BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780413|ref|YP_003064826.1| PAS/PAC sensor signal
transduction histidine kinase [Candidatus Liberibacter asiaticus str.
psy62]
         (820 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done



>gi|254780413|ref|YP_003064826.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|254040090|gb|ACT56886.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 820

 Score =  816 bits (2108), Expect = 0.0,   Method: Composition-based stats.
 Identities = 820/820 (100%), Positives = 820/820 (100%)

Query: 1   MSTDSIISNPEDILTSNCKGNTQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQE 60
           MSTDSIISNPEDILTSNCKGNTQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQE
Sbjct: 1   MSTDSIISNPEDILTSNCKGNTQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQE 60

Query: 61  SVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCD 120
           SVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCD
Sbjct: 61  SVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCD 120

Query: 121 VSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRG 180
           VSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRG
Sbjct: 121 VSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRG 180

Query: 181 FGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV 240
           FGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV
Sbjct: 181 FGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV 240

Query: 241 SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF 300
           SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF
Sbjct: 241 SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF 300

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDI 360
           EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDI
Sbjct: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDI 360

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
           EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK
Sbjct: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
           ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA
Sbjct: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480

Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
           VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS
Sbjct: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540

Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
           LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL
Sbjct: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
           TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE
Sbjct: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720
           PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP
Sbjct: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720

Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
           SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL
Sbjct: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820
           AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI
Sbjct: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820


>gi|306843027|ref|ZP_07475653.1| PAS domain S-box-containing protein [Brucella sp. BO2]
 gi|306286784|gb|EFM58327.1| PAS domain S-box-containing protein [Brucella sp. BO2]
          Length = 1038

 Score =  635 bits (1638), Expect = e-180,   Method: Composition-based stats.
 Identities = 274/797 (34%), Positives = 425/797 (53%), Gaps = 50/797 (6%)

Query: 56   DQNQESVSNTNYLDSEN-TFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI 114
            D   +    T+       TF FD      RF W +   G   EIS +L   +G  +  ++
Sbjct: 242  DAPAQQAQKTHTEQPGPKTFAFDHDAPPARFIWKVGPDGTFSEISPDLAAVVGPNSADIV 301

Query: 115  GMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNRE 174
            G R  DV+++   D +  I  LL  ++TW GK  LWP+EGT L VP++LAALP+YSR+RE
Sbjct: 302  GRRFSDVANVFGFDTDGSIAALLLERDTWSGKRLLWPVEGTRLRVPVELAALPVYSRDRE 361

Query: 175  FSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEK--EKYDIFSQQS--- 229
            F GFRGFGIV     + DP  +G  L        + +K  +   +   + D+ +      
Sbjct: 362  FLGFRGFGIVRPAEAEADPEEIGLALAGGIPQNRKPRKEPAETARMVGEDDVLALSEEVA 421

Query: 230  -----------------PPPHLRMKNKVSSLTEYYAHKDDV------LKTEKYPLLTSEE 266
                             P P  R  +KV SL    A +         LK ++        
Sbjct: 422  NDDQPAAVLPKPPLDITPTPGRRDSDKVISLLNSCAQEKVAADQAKFLKEKERAARPEGG 481

Query: 267  SSLPEQEDFHTINLNQYTKKQYFGTLQNNSK----ESFEYLSHRNHPSLSAYFDEGENLT 322
             +  E+  F  I      +       ++ +      S E +            +  +   
Sbjct: 482  LTKTERNAFREIAERLRKQGLANTRAESETPVSETSSIEPVEPTPPVKTRPAPELIQPDE 541

Query: 323  PETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
               +   P+P  ++S   + Y N + L +T Y+S+DDI  AGG+  L    +  D    +
Sbjct: 542  TALLANLPVPVIIHSGDAIHYVNQALLDITGYESLDDIRGAGGVDVLF-NSESDDGETRQ 600

Query: 383  PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             ++L  +D +     A L+ I W    +L ++ +P   A+                    
Sbjct: 601  SMVLRHADGSEEPVDAHLNAIAWRGGRALMLSLMPVTAADLPAPAELPAAS------DDE 654

Query: 443  NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
             K+ +E  V +L +IL+  +DG+ +I+ EG I S N + S LFGY  ++   K F++   
Sbjct: 655  EKQALEAHVEELKTILDTATDGVVLIDPEGRIRSMNHSASALFGYERDEAEGKFFSMLFA 714

Query: 503  QNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
              +      YL  +    +   L   +  +G   +   + L + I KLP +  +   + D
Sbjct: 715  IESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPHTRGFCAVLRD 774

Query: 561  ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
            I++WK+ + +L++A+K AE+ S+ K++FLAR+SHEIRTPL AIIGFSE++ +++FGP+GN
Sbjct: 775  ITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELMADEKFGPIGN 834

Query: 621  PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
             RY +Y   I+RSGN VL +VNDLLDISKIE+G +++ FE VSL++A+ EAI+L+Q  AN
Sbjct: 835  DRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGEAIALMQPQAN 894

Query: 681  EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
             +R++IR+SF +N+P I+AD RS+KQ+ALN+LSNA+ FT  GGQ+I+ST++  N +V++R
Sbjct: 895  RERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTSYELNGDVVMR 954

Query: 741  VRDTGVGMTNYELEKAMKPFGQ--------IPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
            VRDTG+GM+  E+E+A+KPF Q          +++  R EGTGLGLPL KAMV+AN  +F
Sbjct: 955  VRDTGIGMSKSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTKAMVEANRAQF 1014

Query: 793  YIFSTPAKGTLIEIIFP 809
             I S P +GT++EI+FP
Sbjct: 1015 AIDSNPGQGTVVEIVFP 1031


>gi|239834297|ref|ZP_04682625.1| PAS domain S-box-containing protein [Ochrobactrum intermedium LMG
            3301]
 gi|239822360|gb|EEQ93929.1| PAS domain S-box-containing protein [Ochrobactrum intermedium LMG
            3301]
          Length = 1047

 Score =  633 bits (1632), Expect = e-179,   Method: Composition-based stats.
 Identities = 289/819 (35%), Positives = 439/819 (53%), Gaps = 56/819 (6%)

Query: 37   EKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLK 96
            E+   E     + +       +Q    N         FVFD      RF W +   G   
Sbjct: 232  EEMLPEPAESANADMVEQASADQPKPRN---------FVFDQDAPPARFIWKVGPDGAFT 282

Query: 97   EISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTN 156
            EIS +L  TIG  A  ++G R  DV+++   DP+  I  LL +++TW GK  +WP+EGT+
Sbjct: 283  EISPDLAATIGPNAADVVGRRFADVANVFGFDPDGSIAALLDKRDTWSGKRLMWPVEGTD 342

Query: 157  LYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH----EIKK 212
            L VP++LAALP+YSR+REF+GFRGFG+V     + DP  +G  L            E  +
Sbjct: 343  LRVPVELAALPVYSRDREFTGFRGFGVVRPADAEKDPEEIGLVLAGGIPQTRKPVSETVE 402

Query: 213  GHSSVEKEKYDIFSQQ------------------SPPPHLRMKNKVSSLTEYYAHK---- 250
              +SVE +     S++                  +P P  R  +KV SL    A +    
Sbjct: 403  TVTSVEDDDILALSEEVANDDRPVATLPKPPLDIAPTPGRRESDKVISLLNACAQEKVAA 462

Query: 251  DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310
            D     ++       E  L + E      +    +KQ   + ++ S+             
Sbjct: 463  DQARILKEREREERPEGGLTKTERNAFREIADRLRKQGLASSRSTSEPGALSEEAVADSP 522

Query: 311  LSAYFDEGENLTP--------ETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEI 362
                 +E    TP          +   P+P  ++S   + Y N + L LT Y+S+DDI  
Sbjct: 523  QPVAVEEAALHTPGPTHGDETALLANLPVPVIIHSGDTIHYVNQALLDLTGYESLDDIRG 582

Query: 363  AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
            AGG+  L ++           ++L R+D +     A L+ I W    +L ++ +P     
Sbjct: 583  AGGVDVLFNSESDDGETRQG-MVLRRADGSEEPVDAHLNAIAWRDGRALMLSLMPVAAPA 641

Query: 423  QFP--ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
                 E        P  +D    K+ +   V +L +IL+  +DG+ +I+ EG I S N +
Sbjct: 642  TPAPVETAAAPVETPVAMDKDNEKQALADHVEELKTILDTATDGVVLIDPEGRIRSMNHS 701

Query: 481  VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKL 538
             S LFGY  E+   K F++     +      YL  +    +   L   +  +G   +   
Sbjct: 702  ASALFGYDREETEGKFFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGF 761

Query: 539  LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
            + L + I KLP +  +   + DI++WK+ + +L++A+K AE+ SS K++FLAR+SHEIRT
Sbjct: 762  IPLFMTIGKLPHTRGFCAVLRDITQWKRTEEELTNARKEAERASSQKTEFLARISHEIRT 821

Query: 599  PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
            PL AIIGFSE++ +++FGP+GN RY +Y   I+RSGN VL +VNDLLDISKIE+G +++ 
Sbjct: 822  PLNAIIGFSELMADEKFGPIGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQ 881

Query: 659  FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718
            FE VSL++A++EAI+L+Q  AN +R++IR+SF +N+P I+AD RS+KQ+ALN+LSNA+ F
Sbjct: 882  FEAVSLNDAIAEAIALMQPQANRERVIIRSSFQSNLPDIVADTRSIKQVALNLLSNAVRF 941

Query: 719  TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG------- 771
            T  GGQ+I+ST++  N +V++RVRDTG+GMT  E+E+A+KPF Q+   ++ +        
Sbjct: 942  TAPGGQVIVSTSYELNGDVVMRVRDTGIGMTKSEVEQALKPFRQVNALERRKAESAKDWR 1001

Query: 772  -EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             EGTGLGLPL KAMV+AN  +F I STP  GT++EI FP
Sbjct: 1002 NEGTGLGLPLTKAMVEANRAQFAIDSTPGHGTVVEIAFP 1040


>gi|225853078|ref|YP_002733311.1| PAS domain S-box-containing protein [Brucella melitensis ATCC 23457]
 gi|256045221|ref|ZP_05448119.1| PAS domain S-box-containing protein [Brucella melitensis bv. 1 str.
            Rev.1]
 gi|256114174|ref|ZP_05454928.1| PAS domain S-box-containing protein [Brucella melitensis bv. 3 str.
            Ether]
 gi|256263438|ref|ZP_05465970.1| sensory box histidine kinase [Brucella melitensis bv. 2 str. 63/9]
 gi|260565182|ref|ZP_05835666.1| sensory box histidine kinase [Brucella melitensis bv. 1 str. 16M]
 gi|265991654|ref|ZP_06104211.1| PAS/PAC sensor signal transduction histidine kinase [Brucella
            melitensis bv. 1 str. Rev.1]
 gi|265995492|ref|ZP_06108049.1| PAS/PAC sensor signal transduction histidine kinase [Brucella
            melitensis bv. 3 str. Ether]
 gi|223635641|sp|Q8YIM6|PDHS_BRUME RecName: Full=Cell-division control histidine kinase pdhS
 gi|225641443|gb|ACO01357.1| PAS domain S-box-containing protein [Brucella melitensis ATCC 23457]
 gi|260151250|gb|EEW86344.1| sensory box histidine kinase [Brucella melitensis bv. 1 str. 16M]
 gi|262766605|gb|EEZ12394.1| PAS/PAC sensor signal transduction histidine kinase [Brucella
            melitensis bv. 3 str. Ether]
 gi|263002438|gb|EEZ15013.1| PAS/PAC sensor signal transduction histidine kinase [Brucella
            melitensis bv. 1 str. Rev.1]
 gi|263093447|gb|EEZ17497.1| sensory box histidine kinase [Brucella melitensis bv. 2 str. 63/9]
 gi|326409621|gb|ADZ66686.1| PAS domain S-box-containing protein [Brucella melitensis M28]
 gi|326539324|gb|ADZ87539.1| PAS domain S-box-containing protein [Brucella melitensis M5-90]
          Length = 1035

 Score =  632 bits (1630), Expect = e-179,   Method: Composition-based stats.
 Identities = 274/807 (33%), Positives = 428/807 (53%), Gaps = 56/807 (6%)

Query: 43   NPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEEL 102
                D+  Q       ++    T        F FD      RF W +   G   EIS +L
Sbjct: 238  PEQGDAPAQQAQKTHAEQPRPKT--------FAFDHDAPPARFIWKVGPDGTFSEISPDL 289

Query: 103  PKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPID 162
               +G  +  ++G R  DV+++   D +  I  LL  ++TW GK  LWP+EGT L VP++
Sbjct: 290  AAVVGPNSADIVGRRFSDVANVFGFDTDGSIAALLLERDTWSGKRLLWPVEGTRLRVPVE 349

Query: 163  LAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEK--E 220
            LAALP+YSR+REF GFRGFGIV     + DP  +G  L        + +K  +   +   
Sbjct: 350  LAALPVYSRDREFLGFRGFGIVRPAEAEADPEEIGLALAGGIPQNRKPRKEPAETARMVG 409

Query: 221  KYDIFSQQS--------------------PPPHLRMKNKVSSL------TEYYAHKDDVL 254
            + D+ +                       P P  R  +KV SL       +  A++   L
Sbjct: 410  EDDVLALSEEVANDDHPAAVLPKPPLDITPTPGRRDSDKVISLLNSCAQEKVAANQAKFL 469

Query: 255  KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA- 313
            K ++         +  E+  F  I      +       ++ +  S         P+    
Sbjct: 470  KEKERATRPEGGLTKTERNAFREIAERLRKQGLANTRAESETPVSETSSIEPVEPTPPVK 529

Query: 314  -YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
               +  +      +   P+P  ++S   + Y N + L +T Y+S+DDI  AGG+  L   
Sbjct: 530  TRSEPIQPDETALLANLPVPVIIHSGDAIHYVNQALLDITGYESLDDIRSAGGVDVLF-N 588

Query: 373  PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
             +  D    + ++L  +D +     A L+ I W    +L ++ +P   A+          
Sbjct: 589  SESDDGETRQSMVLRHADGSEEPVDAHLNAIAWRGGRALMLSLMPVTAADLPAPAELPAA 648

Query: 433  IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
                       K+ +E  V +L +IL+  +DG+ +I+ EG I S N + S LFGY  ++ 
Sbjct: 649  -------NDEEKQALEAHVEELKTILDTATDGVVLIDPEGRIRSMNHSASALFGYERDEA 701

Query: 493  LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPF 550
              K F++     +      YL  +    +   L   +  +G   +   + L + I KLP 
Sbjct: 702  EGKFFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPH 761

Query: 551  SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
            +  +   + DI++WK+ + +L++A+K AE+ S+ K++FLAR+SHEIRTPL AIIGFSE++
Sbjct: 762  TRGFCAVLRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELM 821

Query: 611  KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
             +++FGP+GN RY +Y   I+RSGN VL +VNDLLDISKIE+G +++ FE VSL++A+ E
Sbjct: 822  ADEKFGPIGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGE 881

Query: 671  AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
            AI+L+Q  AN +R++IR+SF +N+P I+AD RS+KQ+ALN+LSNA+ FT  GGQ+I+ST+
Sbjct: 882  AIALMQPQANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTS 941

Query: 731  HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ--------IPNSQQIRGEGTGLGLPLAK 782
            +  N +V++RVRDTG+GM+  E+E+A+KPF Q          +++  R EGTGLGLPL K
Sbjct: 942  YELNGDVVMRVRDTGIGMSKSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTK 1001

Query: 783  AMVDANMGKFYIFSTPAKGTLIEIIFP 809
            AMV+AN  +F I S P +GT++EI+FP
Sbjct: 1002 AMVEANRAQFAIDSNPGQGTVVEIVFP 1028



 Score = 40.4 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 48/578 (8%), Positives = 124/578 (21%), Gaps = 117/578 (20%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +DA G +   S      +   A       L D+        +  +   ++  +       
Sbjct: 141 VDAVGKVVAASPRFA-LLDISAS-----TLEDLIVEAGDATDRIVKRRIRTGSHSVPGAI 194

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +   L++   +   P                         P      L++      
Sbjct: 195 ARLTDTPALHLLCIVGDAPAQ-------------FQTAAEAVPLPDNAEAVLEEILPEQG 241

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           +     +     +       +          +  +       D         L      +
Sbjct: 242 DAPAQQAQKTHAEQPRPKTFAFDHDAPPARFIWKVGP-----DGTFSEISPDLAAVVGPN 296

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
             +       ++         G++     E   +        L    +      P  +  
Sbjct: 297 SADIVGRRFSDVANVFGFDTDGSIAALLLERDTWSG----KRLLWPVEGTRLRVPVELAA 352

Query: 329 CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG-GLSTLLDAPKLSDNNAIKPVMLY 387
            P    VYS    F     F ++   ++  D E  G  L+  +   +       +   + 
Sbjct: 353 LP----VYSRDREFLGFRGFGIVRPAEAEADPEEIGLALAGGIPQNRKPRKEPAETARMV 408

Query: 388 RSDRTCI------------------AASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
             D                               + + +  +++     ++     +   
Sbjct: 409 GEDDVLALSEEVANDDHPAAVLPKPPLDITPTPGRRDSDKVISLLNSCAQEKVAANQAKF 468

Query: 430 QNGIEPEDVDT----RINKRKMEIEVMQLC------------------------------ 455
               E          +  +        +L                               
Sbjct: 469 LKEKERATRPEGGLTKTERNAFREIAERLRKQGLANTRAESETPVSETSSIEPVEPTPPV 528

Query: 456 ------------SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
                       ++L      + I + +  I   N+A+  + GY             L+ 
Sbjct: 529 KTRSEPIQPDETALLANLPVPVIIHSGD-AIHYVNQALLDITGYES-----------LDD 576

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
              +     L    S D       +   +   E+ +   +            L++  ++ 
Sbjct: 577 IRSAGGVDVLFNSESDDGETRQSMVLRHADGSEEPVDAHLNAIAWRGGRALMLSLMPVTA 636

Query: 564 W-KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
                  +L  A    ++      +       E++T L
Sbjct: 637 ADLPAPAELPAANDEEKQALEAHVE-------ELKTIL 667



 Score = 38.1 bits (87), Expect = 5.6,   Method: Composition-based stats.
 Identities = 35/299 (11%), Positives = 81/299 (27%), Gaps = 19/299 (6%)

Query: 8   SNPEDILTSNCKGNTQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNY 67
           + PE  LT   +   ++++++    G    +++ E P  ++                T  
Sbjct: 476 TRPEGGLTKTERNAFREIAERLRKQGLANTRAESETPVSETSSIEPVEPTP---PVKTRS 532

Query: 68  LDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI 127
              +           V     I +   +  +++ L    G  +   I      V  + + 
Sbjct: 533 EPIQPDETALLANLPVPVI--IHSGDAIHYVNQALLDITGYESLDDI-RSAGGVDVLFNS 589

Query: 128 DPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187
           + ++      + + +      L   +G+    P+D     I  R           +    
Sbjct: 590 ESDDG-----ETRQS----MVLRHADGSEE--PVDAHLNAIAWRGGRALMLSLMPV--TA 636

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247
                P  L    D++   L    +   ++     D      P   +R  N  +S    Y
Sbjct: 637 ADLPAPAELPAANDEEKQALEAHVEELKTILDTATDGVVLIDPEGRIRSMNHSASALFGY 696

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
              +   K          + +  +     + N            +   +K  F  L   
Sbjct: 697 ERDEAEGKFFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMT 755


>gi|17986700|ref|NP_539334.1| non-motile and phage-resistance protein [Brucella melitensis bv. 1
           str. 16M]
 gi|17982322|gb|AAL51598.1| non-motile and phage-resistance protein [Brucella melitensis bv. 1
           str. 16M]
          Length = 813

 Score =  632 bits (1630), Expect = e-179,   Method: Composition-based stats.
 Identities = 274/807 (33%), Positives = 428/807 (53%), Gaps = 56/807 (6%)

Query: 43  NPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEEL 102
               D+  Q       ++    T        F FD      RF W +   G   EIS +L
Sbjct: 16  PEQGDAPAQQAQKTHAEQPRPKT--------FAFDHDAPPARFIWKVGPDGTFSEISPDL 67

Query: 103 PKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPID 162
              +G  +  ++G R  DV+++   D +  I  LL  ++TW GK  LWP+EGT L VP++
Sbjct: 68  AAVVGPNSADIVGRRFSDVANVFGFDTDGSIAALLLERDTWSGKRLLWPVEGTRLRVPVE 127

Query: 163 LAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEK--E 220
           LAALP+YSR+REF GFRGFGIV     + DP  +G  L        + +K  +   +   
Sbjct: 128 LAALPVYSRDREFLGFRGFGIVRPAEAEADPEEIGLALAGGIPQNRKPRKEPAETARMVG 187

Query: 221 KYDIFSQQS--------------------PPPHLRMKNKVSSL------TEYYAHKDDVL 254
           + D+ +                       P P  R  +KV SL       +  A++   L
Sbjct: 188 EDDVLALSEEVANDDHPAAVLPKPPLDITPTPGRRDSDKVISLLNSCAQEKVAANQAKFL 247

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA- 313
           K ++         +  E+  F  I      +       ++ +  S         P+    
Sbjct: 248 KEKERATRPEGGLTKTERNAFREIAERLRKQGLANTRAESETPVSETSSIEPVEPTPPVK 307

Query: 314 -YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
              +  +      +   P+P  ++S   + Y N + L +T Y+S+DDI  AGG+  L   
Sbjct: 308 TRSEPIQPDETALLANLPVPVIIHSGDAIHYVNQALLDITGYESLDDIRSAGGVDVLF-N 366

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
            +  D    + ++L  +D +     A L+ I W    +L ++ +P   A+          
Sbjct: 367 SESDDGETRQSMVLRHADGSEEPVDAHLNAIAWRGGRALMLSLMPVTAADLPAPAELPAA 426

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
                      K+ +E  V +L +IL+  +DG+ +I+ EG I S N + S LFGY  ++ 
Sbjct: 427 -------NDEEKQALEAHVEELKTILDTATDGVVLIDPEGRIRSMNHSASALFGYERDEA 479

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPF 550
             K F++     +      YL  +    +   L   +  +G   +   + L + I KLP 
Sbjct: 480 EGKFFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPH 539

Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
           +  +   + DI++WK+ + +L++A+K AE+ S+ K++FLAR+SHEIRTPL AIIGFSE++
Sbjct: 540 TRGFCAVLRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELM 599

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
            +++FGP+GN RY +Y   I+RSGN VL +VNDLLDISKIE+G +++ FE VSL++A+ E
Sbjct: 600 ADEKFGPIGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGE 659

Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
           AI+L+Q  AN +R++IR+SF +N+P I+AD RS+KQ+ALN+LSNA+ FT  GGQ+I+ST+
Sbjct: 660 AIALMQPQANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTS 719

Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ--------IPNSQQIRGEGTGLGLPLAK 782
           +  N +V++RVRDTG+GM+  E+E+A+KPF Q          +++  R EGTGLGLPL K
Sbjct: 720 YELNGDVVMRVRDTGIGMSKSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTK 779

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFP 809
           AMV+AN  +F I S P +GT++EI+FP
Sbjct: 780 AMVEANRAQFAIDSNPGQGTVVEIVFP 806



 Score = 38.1 bits (87), Expect = 5.6,   Method: Composition-based stats.
 Identities = 35/299 (11%), Positives = 81/299 (27%), Gaps = 19/299 (6%)

Query: 8   SNPEDILTSNCKGNTQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNY 67
           + PE  LT   +   ++++++    G    +++ E P  ++                T  
Sbjct: 254 TRPEGGLTKTERNAFREIAERLRKQGLANTRAESETPVSETSSIEPVEPTP---PVKTRS 310

Query: 68  LDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI 127
              +           V     I +   +  +++ L    G  +   I      V  + + 
Sbjct: 311 EPIQPDETALLANLPVPVI--IHSGDAIHYVNQALLDITGYESLDDI-RSAGGVDVLFNS 367

Query: 128 DPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187
           + ++      + + +      L   +G+    P+D     I  R           +    
Sbjct: 368 ESDDG-----ETRQS----MVLRHADGSEE--PVDAHLNAIAWRGGRALMLSLMPV--TA 414

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247
                P  L    D++   L    +   ++     D      P   +R  N  +S    Y
Sbjct: 415 ADLPAPAELPAANDEEKQALEAHVEELKTILDTATDGVVLIDPEGRIRSMNHSASALFGY 474

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
              +   K          + +  +     + N            +   +K  F  L   
Sbjct: 475 ERDEAEGKFFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMT 533


>gi|254719631|ref|ZP_05181442.1| sensory box histidine kinase [Brucella sp. 83/13]
 gi|265984641|ref|ZP_06097376.1| PAS/PAC sensor signal transduction histidine kinase [Brucella sp.
            83/13]
 gi|306837734|ref|ZP_07470602.1| PAS/PAC sensor signal transduction histidine kinase [Brucella sp. NF
            2653]
 gi|264663233|gb|EEZ33494.1| PAS/PAC sensor signal transduction histidine kinase [Brucella sp.
            83/13]
 gi|306407190|gb|EFM63401.1| PAS/PAC sensor signal transduction histidine kinase [Brucella sp. NF
            2653]
          Length = 1036

 Score =  632 bits (1630), Expect = e-179,   Method: Composition-based stats.
 Identities = 273/807 (33%), Positives = 425/807 (52%), Gaps = 55/807 (6%)

Query: 43   NPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEEL 102
                D+  Q       ++    T        F FD      RF W +   G   EIS +L
Sbjct: 238  PEQMDTPAQQAQKTHGEQPGPKT--------FAFDHDAPPARFIWKVGPDGTFSEISPDL 289

Query: 103  PKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPID 162
               +G  +  ++G R  DV+++   D +  I  LL  ++TW GK  LWP+EGT L VP++
Sbjct: 290  AAVVGPNSADIVGRRFSDVANVFGFDTDGSIAALLLERDTWSGKRLLWPVEGTRLRVPVE 349

Query: 163  LAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEK--E 220
            LAALP+YSR+REF GFRGFGIV     + DP  +G  L        + +K  +   +   
Sbjct: 350  LAALPVYSRDREFLGFRGFGIVRPAEAEADPEEIGLALAGGIPQNRKPRKEPAETARMVG 409

Query: 221  KYDIFSQQS--------------------PPPHLRMKNKVSSLTEYYAHKDDV------L 254
            + D+ +                       P P  R  +KV SL    A +         L
Sbjct: 410  EDDVLALSEEVANDDQPAAVLPKPPLDITPTPGRRDSDKVISLLNSCAQEKVAADQAKFL 469

Query: 255  KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA- 313
            K ++         +  E+  F  I      +       ++ +  S         P+    
Sbjct: 470  KEKERAARPEGGLTKTERNAFREIAERLRKQGLANTRAESETPVSETSSIEPVEPTPPVK 529

Query: 314  -YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
               +  +      +   P+P  ++S   + Y N + L +T Y+S+DDI  AGG+  L   
Sbjct: 530  TRSEPIQPDETALLANLPVPVIIHSGDAIHYVNQALLDITGYESLDDIRGAGGVDVLF-N 588

Query: 373  PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
             +  D    + ++L  +D +       L+ I W    +L ++ +P   A+          
Sbjct: 589  SESDDGETRQSMVLRHADGSEQPVDTHLNAIAWRGGRALMLSLMPVAAADLPAPAELPTA 648

Query: 433  IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
                       K+ +E  V +L +IL+  +DG+ +I+ EG I S N + S LFGY  ++ 
Sbjct: 649  S------DDEEKQALEAHVEELKTILDTATDGVVLIDPEGRIRSMNHSASALFGYERDEA 702

Query: 493  LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPF 550
              K F++     +      YL  +    +   L   +  +G   +   + L + I KLP 
Sbjct: 703  EGKFFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPH 762

Query: 551  SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
            +  +   + DI++WK+ + +L++A+K AE+ S+ K++FLAR+SHEIRTPL AIIGFSE++
Sbjct: 763  TRGFCAVLRDITQWKRTEEELTNARKEAERTSNQKTEFLARISHEIRTPLNAIIGFSELM 822

Query: 611  KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
             +++FGP+GN RY +Y   I+RSGN VL +VNDLLDISKIE+G +++ FE VSL++A+ E
Sbjct: 823  ADEKFGPIGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGE 882

Query: 671  AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
            AI+L+Q  AN +R++IR+SF +N+P I+AD RS+KQ+ALN+LSNA+ FT  GGQ+I+ST+
Sbjct: 883  AIALMQPQANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTS 942

Query: 731  HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ--------IPNSQQIRGEGTGLGLPLAK 782
            +  N +V++RVRDTG+GM+  E+E+A+KPF Q          +++  R EGTGLGLPL K
Sbjct: 943  YELNGDVVMRVRDTGIGMSKSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTK 1002

Query: 783  AMVDANMGKFYIFSTPAKGTLIEIIFP 809
            AMV+AN  +F I S P +GT++EI+FP
Sbjct: 1003 AMVEANRAQFAIDSNPGQGTVVEIVFP 1029



 Score = 37.7 bits (86), Expect = 7.5,   Method: Composition-based stats.
 Identities = 50/565 (8%), Positives = 131/565 (23%), Gaps = 104/565 (18%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +DA G +   S      +   A       L D+   +    +  +   ++  +       
Sbjct: 141 VDAVGKVVAASPRFA-LLDISAS-----TLEDLIVEVGDATDRIVKRRIRTGSHSVPGAI 194

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +   L++   +   P  ++                 + ++   + + +  +     
Sbjct: 195 ARLTDTPALHLLCIVGDAPDQTQT----------AAEAAPLPDNAEEVLEEILPEQMDTP 244

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
             +   +  E+     F+     P  R   KV          D         L      +
Sbjct: 245 AQQAQKTHGEQPGPKTFAFDHDAPPARFIWKVG--------PDGTFSEISPDLAAVVGPN 296

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
             +       ++         G++     E   +        L    +      P  +  
Sbjct: 297 SADIVGRRFSDVANVFGFDTDGSIAALLLERDTWSG----KRLLWPVEGTRLRVPVELAA 352

Query: 329 CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG-GLSTLLDAPKLSDNNAIKPVMLY 387
            P    VYS    F     F ++   ++  D E  G  L+  +   +       +   + 
Sbjct: 353 LP----VYSRDREFLGFRGFGIVRPAEAEADPEEIGLALAGGIPQNRKPRKEPAETARMV 408

Query: 388 RSDRTCI------------------AASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
             D                               + + +  +++     ++     +   
Sbjct: 409 GEDDVLALSEEVANDDQPAAVLPKPPLDITPTPGRRDSDKVISLLNSCAQEKVAADQAKF 468

Query: 430 QNGIEPEDVDT----RINKRKMEIEVMQLC------------------------------ 455
               E          +  +        +L                               
Sbjct: 469 LKEKERAARPEGGLTKTERNAFREIAERLRKQGLANTRAESETPVSETSSIEPVEPTPPV 528

Query: 456 ------------SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL----RKPFTV 499
                       ++L      + I + +  I   N+A+  + GY   D +          
Sbjct: 529 KTRSEPIQPDETALLANLPVPVIIHSGD-AIHYVNQALLDITGYESLDDIRGAGGVDVLF 587

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF--SSCYSLT 557
             E +        +        +     +   + +  + L L ++        +     T
Sbjct: 588 NSESDDGETRQSMVLRHADGSEQPVDTHLNAIAWRGGRALMLSLMPVAAADLPAPAELPT 647

Query: 558 MHDISEWKQEKNKLSHAKKIAEKES 582
             D  E +  +  +   K I +  +
Sbjct: 648 ASDDEEKQALEAHVEELKTILDTAT 672


>gi|62290486|ref|YP_222279.1| sensory box histidine kinase [Brucella abortus bv. 1 str. 9-941]
 gi|82700409|ref|YP_414983.1| PAS/histidine kinase/ATPase domain-containing protein [Brucella
            melitensis biovar Abortus 2308]
 gi|189024711|ref|YP_001935479.1| sensory box histidine kinase [Brucella abortus S19]
 gi|237815994|ref|ZP_04594991.1| PAS domain S-box-containing protein [Brucella abortus str. 2308 A]
 gi|254697930|ref|ZP_05159758.1| sensory box histidine kinase [Brucella abortus bv. 2 str. 86/8/59]
 gi|254730820|ref|ZP_05189398.1| sensory box histidine kinase [Brucella abortus bv. 4 str. 292]
 gi|260547015|ref|ZP_05822754.1| sensory box histidine kinase [Brucella abortus NCTC 8038]
 gi|260758539|ref|ZP_05870887.1| PAS/PAC sensor signal transduction histidine kinase [Brucella abortus
            bv. 4 str. 292]
 gi|260762362|ref|ZP_05874705.1| PAS/PAC sensor signal transduction histidine kinase [Brucella abortus
            bv. 2 str. 86/8/59]
 gi|75496411|sp|Q57BR6|PDHS_BRUAB RecName: Full=Cell-division control histidine kinase pdhS; AltName:
            Full=PleC-divJ homolog sensor
 gi|123768481|sp|Q2YRB4|PDHS_BRUA2 RecName: Full=Cell-division control histidine kinase pdhS
 gi|223635608|sp|B2S758|PDHS_BRUA1 RecName: Full=Cell-division control histidine kinase pdhS
 gi|62196618|gb|AAX74918.1| sensory box histidine kinase [Brucella abortus bv. 1 str. 9-941]
 gi|82616510|emb|CAJ11577.1| PAS domain:ATP-binding region, ATPase-like:Histidine kinase A,
            N-terminal:Bacterial sensor protein, C-terminal:Histidine
            kinase [Brucella melitensis biovar Abortus 2308]
 gi|189020283|gb|ACD73005.1| sensory box histidine kinase [Brucella abortus S19]
 gi|237789292|gb|EEP63503.1| PAS domain S-box-containing protein [Brucella abortus str. 2308 A]
 gi|260096065|gb|EEW79942.1| sensory box histidine kinase [Brucella abortus NCTC 8038]
 gi|260668857|gb|EEX55797.1| PAS/PAC sensor signal transduction histidine kinase [Brucella abortus
            bv. 4 str. 292]
 gi|260672794|gb|EEX59615.1| PAS/PAC sensor signal transduction histidine kinase [Brucella abortus
            bv. 2 str. 86/8/59]
          Length = 1035

 Score =  632 bits (1629), Expect = e-179,   Method: Composition-based stats.
 Identities = 274/807 (33%), Positives = 425/807 (52%), Gaps = 56/807 (6%)

Query: 43   NPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEEL 102
                D+  Q       ++    T        F FD      RF W +   G   EIS  L
Sbjct: 238  PEQGDAPAQQAQKTHAEQPRPKT--------FAFDHDAPPARFIWKVGPDGTFSEISPNL 289

Query: 103  PKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPID 162
               +G  +  ++G R  DV+++   D +  I  LL  ++TW GK  LWP+EGT L VP++
Sbjct: 290  AAVVGPNSADIVGRRFSDVANVFGFDTDGSIAALLLERDTWSGKRLLWPVEGTRLRVPVE 349

Query: 163  LAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEK--E 220
            LAALP+YSR+REF GFRGFGIV     + DP  +G  L        + +K  +   +   
Sbjct: 350  LAALPVYSRDREFLGFRGFGIVRPAEAEADPEEIGLALAGGIPQNRKPRKEPAETARMVG 409

Query: 221  KYDIFSQQS--------------------PPPHLRMKNKVSSLTEYYAHKDDV------L 254
            + D+ +                       P P  R  +KV SL    A +         L
Sbjct: 410  EDDVLALSEEVANDDQPAAVLPKPPLDITPTPGRRDSDKVISLLNSCAQEKVAADQAKFL 469

Query: 255  KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA- 313
            K ++         +  E+  F  I      +       ++ +  S         P+    
Sbjct: 470  KEKERATRPEGGLTKTERNAFREIAERLRKQGLANTRAESETPVSETSSIEPVEPTPPVK 529

Query: 314  -YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
               +  +      +   P+P  ++S   + Y N + L +T Y+S+DDI  AGG+  L   
Sbjct: 530  TRSEPIQPDETALLANLPVPVIIHSGDAIHYVNQALLDITGYESLDDIRSAGGVDVLF-N 588

Query: 373  PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
             +  D    + ++L  +D +     A L+ I W    +L ++ +P   A+          
Sbjct: 589  SESDDGETRQSMLLRHADGSEEPVDAHLNAIAWRGGRALMLSLMPVTAADLPAPAELPAA 648

Query: 433  IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
                       K+ +E  V +L +IL+  +DG+ +I+ EG I S N + S LFGY  ++ 
Sbjct: 649  -------NDEEKQALEAHVEELKTILDTATDGVVLIDPEGRIRSMNHSASALFGYERDEA 701

Query: 493  LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPF 550
              K F++     +      YL  +    +   L   +  +G   +   + L + I KLP 
Sbjct: 702  EGKFFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPH 761

Query: 551  SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
            +  +   + DI++WK+ + +L++A+K AE+ S+ K++FLAR+SHEIRTPL AIIGFSE++
Sbjct: 762  TRGFCAVLRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELM 821

Query: 611  KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
             +++FGP+GN RY +Y   I+RSGN VL +VNDLLDISKIE+G +++ FE VSL++A+ E
Sbjct: 822  ADEKFGPIGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGE 881

Query: 671  AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
            AI+L+Q  AN +R++IR+SF +N+P I+AD RS+KQ+ALN+LSNA+ FT  GGQ+I+ST+
Sbjct: 882  AIALMQPQANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTS 941

Query: 731  HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ--------IPNSQQIRGEGTGLGLPLAK 782
            +  N +V++RVRDTG+GM+  E+E+A+KPF Q          +++  R EGTGLGLPL K
Sbjct: 942  YELNGDVVMRVRDTGIGMSKSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTK 1001

Query: 783  AMVDANMGKFYIFSTPAKGTLIEIIFP 809
            AMV+AN  +F I S P +GT++EI+FP
Sbjct: 1002 AMVEANRAQFAIDSNPGQGTVVEIVFP 1028



 Score = 39.6 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 48/578 (8%), Positives = 124/578 (21%), Gaps = 117/578 (20%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +DA G +   S      +   A       L D+        +  +   ++  +       
Sbjct: 141 VDAVGKVVAASPRFA-LLDISAS-----TLEDLIVEAGDATDRIVKRRIRTGSHSVPGAI 194

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +   L++   +   P                         P      L++      
Sbjct: 195 ARLTDTPALHLLCIVGDAPAQ-------------FQTAAEAVPLPDNAEAVLEEILPEQG 241

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           +     +     +       +          +  +       D         L      +
Sbjct: 242 DAPAQQAQKTHAEQPRPKTFAFDHDAPPARFIWKVGP-----DGTFSEISPNLAAVVGPN 296

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
             +       ++         G++     E   +        L    +      P  +  
Sbjct: 297 SADIVGRRFSDVANVFGFDTDGSIAALLLERDTWSG----KRLLWPVEGTRLRVPVELAA 352

Query: 329 CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG-GLSTLLDAPKLSDNNAIKPVMLY 387
            P    VYS    F     F ++   ++  D E  G  L+  +   +       +   + 
Sbjct: 353 LP----VYSRDREFLGFRGFGIVRPAEAEADPEEIGLALAGGIPQNRKPRKEPAETARMV 408

Query: 388 RSDRTCI------------------AASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
             D                               + + +  +++     ++     +   
Sbjct: 409 GEDDVLALSEEVANDDQPAAVLPKPPLDITPTPGRRDSDKVISLLNSCAQEKVAADQAKF 468

Query: 430 QNGIEPEDVDT----RINKRKMEIEVMQLC------------------------------ 455
               E          +  +        +L                               
Sbjct: 469 LKEKERATRPEGGLTKTERNAFREIAERLRKQGLANTRAESETPVSETSSIEPVEPTPPV 528

Query: 456 ------------SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
                       ++L      + I + +  I   N+A+  + GY             L+ 
Sbjct: 529 KTRSEPIQPDETALLANLPVPVIIHSGD-AIHYVNQALLDITGYES-----------LDD 576

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
              +     L    S D       +   +   E+ +   +            L++  ++ 
Sbjct: 577 IRSAGGVDVLFNSESDDGETRQSMLLRHADGSEEPVDAHLNAIAWRGGRALMLSLMPVTA 636

Query: 564 W-KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
                  +L  A    ++      +       E++T L
Sbjct: 637 ADLPAPAELPAANDEEKQALEAHVE-------ELKTIL 667



 Score = 38.5 bits (88), Expect = 5.4,   Method: Composition-based stats.
 Identities = 35/299 (11%), Positives = 81/299 (27%), Gaps = 19/299 (6%)

Query: 8   SNPEDILTSNCKGNTQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNY 67
           + PE  LT   +   ++++++    G    +++ E P  ++                T  
Sbjct: 476 TRPEGGLTKTERNAFREIAERLRKQGLANTRAESETPVSETSSIEPVEPTP---PVKTRS 532

Query: 68  LDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI 127
              +           V     I +   +  +++ L    G  +   I      V  + + 
Sbjct: 533 EPIQPDETALLANLPVPVI--IHSGDAIHYVNQALLDITGYESLDDI-RSAGGVDVLFNS 589

Query: 128 DPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187
           + ++      + + +      L   +G+    P+D     I  R           +    
Sbjct: 590 ESDDG-----ETRQS----MLLRHADGSEE--PVDAHLNAIAWRGGRALMLSLMPV--TA 636

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247
                P  L    D++   L    +   ++     D      P   +R  N  +S    Y
Sbjct: 637 ADLPAPAELPAANDEEKQALEAHVEELKTILDTATDGVVLIDPEGRIRSMNHSASALFGY 696

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
              +   K          + +  +     + N            +   +K  F  L   
Sbjct: 697 ERDEAEGKFFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMT 755


>gi|306844607|ref|ZP_07477194.1| PAS/PAC sensor signal transduction histidine kinase [Brucella sp.
            BO1]
 gi|306275051|gb|EFM56814.1| PAS/PAC sensor signal transduction histidine kinase [Brucella sp.
            BO1]
          Length = 1036

 Score =  631 bits (1628), Expect = e-178,   Method: Composition-based stats.
 Identities = 276/807 (34%), Positives = 428/807 (53%), Gaps = 55/807 (6%)

Query: 43   NPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEEL 102
                D+  Q       ++    T        F FD      RF W +   G   EIS +L
Sbjct: 238  PEQMDTPAQQAQKTHAEQPRPKT--------FAFDHDAPPARFIWKVGPDGTFSEISPDL 289

Query: 103  PKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPID 162
               +G  +  ++G R  DV+++   D +  I  LL  ++TW GK  LWP+EGT L VP++
Sbjct: 290  AAVVGPNSADIVGRRFSDVANVFGFDTDGSIAALLLERDTWSGKRLLWPVEGTRLRVPVE 349

Query: 163  LAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEK--E 220
            LAALP+YSR+REF GFRGFGIV     + DP  +G  L        + +K  +   +   
Sbjct: 350  LAALPVYSRDREFLGFRGFGIVRPAEAEADPEEIGLALAGGIPQNRKPRKEPAETARMVG 409

Query: 221  KYDIFSQQS--------------------PPPHLRMKNKVSSLTEYYAHKDDV------L 254
            + DI +                       P P  R  +KV SL    A +         L
Sbjct: 410  EDDILALSEEVANDDQPAAVLPKPPLDITPTPGRRDSDKVISLLNSCAQEKVAADQAKFL 469

Query: 255  KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA- 313
            K ++         +  E+  F  I      +       ++ +  S         P+    
Sbjct: 470  KEKERTARPEGGLTKTERNAFREIAERLRKQGLANTRAESETTVSETSSIEPVEPTPPVK 529

Query: 314  -YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
               +  +      +   P+P  ++S   + Y N + L +T Y+S+DDI  AGG+  L   
Sbjct: 530  TRSEPIQPDETALLANLPVPVIIHSGDAIHYVNQALLDITGYESLDDIRGAGGVDVLF-N 588

Query: 373  PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
             + +D    + ++L  +D +    +A L+ I W    +L ++ +P   AN          
Sbjct: 589  SESNDGETRQSMVLRHADGSEEPVNAHLNAIAWRGGRALMLSLMPVAAANLPVPAELPAA 648

Query: 433  IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
                       K+ +E  V +L +IL+  +DG+ +I+ EG I S N + S LFGY  ++ 
Sbjct: 649  S------DDEEKQALEAHVEELKTILDTATDGVVLIDPEGRIRSMNHSASALFGYERDEA 702

Query: 493  LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPF 550
              K F++     +      YL  +    +   L   +  +G   +   + L + I KLP 
Sbjct: 703  EGKFFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPH 762

Query: 551  SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
            +  +   + DI++WK+ + +L++A+K AE+ S+ K++FLAR+SHEIRTPL AIIGFSE++
Sbjct: 763  TRGFCAVLRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELM 822

Query: 611  KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
             +++FGP+GN RY +Y   I+RSGN VL +VNDLLDISKIE+G +++ FE VSL++A+ E
Sbjct: 823  ADEKFGPIGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGE 882

Query: 671  AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
            AI+L+Q  AN +R++IR+SF +N+P I+AD RS+KQ+ALN+LSNA+ FT  GGQ+I+ST+
Sbjct: 883  AIALMQPQANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTS 942

Query: 731  HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ--------IPNSQQIRGEGTGLGLPLAK 782
            +  N +V++RVRDTG+GM+  E+E+A+KPF Q          +++  R EGTGLGLPL K
Sbjct: 943  YELNGDVVMRVRDTGIGMSKSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTK 1002

Query: 783  AMVDANMGKFYIFSTPAKGTLIEIIFP 809
            AMV+AN  +F I S P +GT++EI+FP
Sbjct: 1003 AMVEANRAQFAIDSNPGQGTVVEIVFP 1029


>gi|225628039|ref|ZP_03786075.1| PAS domain S-box-containing protein [Brucella ceti str. Cudo]
 gi|254702323|ref|ZP_05164151.1| sensory box histidine kinase [Brucella suis bv. 5 str. 513]
 gi|254710637|ref|ZP_05172448.1| sensory box histidine kinase [Brucella pinnipedialis B2/94]
 gi|256032130|ref|ZP_05445744.1| sensory box histidine kinase [Brucella pinnipedialis M292/94/1]
 gi|256160326|ref|ZP_05458020.1| sensory box histidine kinase [Brucella ceti M490/95/1]
 gi|256255531|ref|ZP_05461067.1| sensory box histidine kinase [Brucella ceti B1/94]
 gi|256370019|ref|YP_003107530.1| sensory box histidine kinase [Brucella microti CCM 4915]
 gi|260169265|ref|ZP_05756076.1| sensory box histidine kinase [Brucella sp. F5/99]
 gi|261222740|ref|ZP_05937021.1| PAS/PAC sensor signal transduction histidine kinase [Brucella ceti
            B1/94]
 gi|261318208|ref|ZP_05957405.1| PAS/PAC sensor signal transduction histidine kinase [Brucella
            pinnipedialis B2/94]
 gi|261752887|ref|ZP_05996596.1| PAS/PAC sensor signal transduction histidine kinase [Brucella suis
            bv. 5 str. 513]
 gi|261758777|ref|ZP_06002486.1| sensory box histidine kinase [Brucella sp. F5/99]
 gi|265989241|ref|ZP_06101798.1| PAS/PAC sensor signal transduction histidine kinase [Brucella
            pinnipedialis M292/94/1]
 gi|265998702|ref|ZP_06111259.1| PAS/PAC sensor signal transduction histidine kinase [Brucella ceti
            M490/95/1]
 gi|225617202|gb|EEH14248.1| PAS domain S-box-containing protein [Brucella ceti str. Cudo]
 gi|256000182|gb|ACU48581.1| sensory box histidine kinase [Brucella microti CCM 4915]
 gi|260921324|gb|EEX87977.1| PAS/PAC sensor signal transduction histidine kinase [Brucella ceti
            B1/94]
 gi|261297431|gb|EEY00928.1| PAS/PAC sensor signal transduction histidine kinase [Brucella
            pinnipedialis B2/94]
 gi|261738761|gb|EEY26757.1| sensory box histidine kinase [Brucella sp. F5/99]
 gi|261742640|gb|EEY30566.1| PAS/PAC sensor signal transduction histidine kinase [Brucella suis
            bv. 5 str. 513]
 gi|262553326|gb|EEZ09160.1| PAS/PAC sensor signal transduction histidine kinase [Brucella ceti
            M490/95/1]
 gi|264661438|gb|EEZ31699.1| PAS/PAC sensor signal transduction histidine kinase [Brucella
            pinnipedialis M292/94/1]
          Length = 1035

 Score =  631 bits (1628), Expect = e-178,   Method: Composition-based stats.
 Identities = 274/807 (33%), Positives = 426/807 (52%), Gaps = 56/807 (6%)

Query: 43   NPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEEL 102
                D+  Q       ++    T        F FD      RF W +   G   EIS +L
Sbjct: 238  PEQGDAPAQQAQKTHAEQPRPKT--------FAFDHDAPPARFIWKVGPDGTFSEISPDL 289

Query: 103  PKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPID 162
               +G  +  ++G R  DV+++   D +  I  LL  ++TW GK  LWP+EGT L VP++
Sbjct: 290  AAVVGPNSADIVGRRFSDVANVFGFDTDGSIAALLLERDTWSGKRLLWPVEGTRLRVPVE 349

Query: 163  LAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEK--E 220
            LAALP+YSR+REF GFRGFGIV     + DP  +G  L        + +K  +   +   
Sbjct: 350  LAALPVYSRDREFLGFRGFGIVRPAEAEADPEEIGLALAGGIPQNRKPRKEPAETARMVG 409

Query: 221  KYDIFSQQS--------------------PPPHLRMKNKVSSLTEYYAHKDDV------L 254
            + D+ +                       P P  R  +KV SL    A +         L
Sbjct: 410  EDDVLALSEEVANDDQPAAVLPKPPLDITPTPGRRDSDKVISLLNSCAQEKVAADQAKFL 469

Query: 255  KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA- 313
            K ++         +  E+  F  I      +       ++ +  S         P+    
Sbjct: 470  KEKERATRPEGGLTKTERNAFREIAERLRKQGLANTRAESETPVSETSSIEPVEPTPPVK 529

Query: 314  -YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
               +  +      +   P+P  ++S   + Y N + L +T Y+S+DDI  AGG+  L   
Sbjct: 530  TRSEPIQPDETALLANLPVPVIIHSGDAIHYVNQALLDITGYESLDDIRSAGGVDVLF-N 588

Query: 373  PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
             +  D    + ++L  +D +     A L+ I W    +L ++ +P   A+          
Sbjct: 589  SESDDGETRQSMVLRHADGSEEPVDAHLNAIAWRGGRALMLSLMPVTAADLPAPAELPAA 648

Query: 433  IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
                       K+ +E  V +L +IL+  +DG+ +I+ EG I S N + S LFGY  ++ 
Sbjct: 649  -------NDEEKQALEAHVEELKTILDTATDGVVLIDPEGRIRSMNHSASALFGYERDEA 701

Query: 493  LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPF 550
              K F++     +      YL  +    +   L   +  +G   +   + L + I KLP 
Sbjct: 702  EGKFFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPH 761

Query: 551  SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
            +  +   + DI++WK+ + +L++A+K AE+ S+ K++FLAR+SHEIRTPL AIIGFSE++
Sbjct: 762  TRGFCAVLRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELM 821

Query: 611  KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
             +++FGP+GN RY +Y   I+RSGN VL +VNDLLDISKIE+G +++ FE VSL++A+ E
Sbjct: 822  ADEKFGPIGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGE 881

Query: 671  AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
            AI+L+Q  AN +R++IR+SF +N+P I+AD RS+KQ+ALN+LSNA+ FT  GGQ+I+ST+
Sbjct: 882  AIALMQPQANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTS 941

Query: 731  HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ--------IPNSQQIRGEGTGLGLPLAK 782
            +  N +V++RVRDTG+GM+  E+E+A+KPF Q          +++  R EGTGLGLPL K
Sbjct: 942  YELNGDVVMRVRDTGIGMSKSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTK 1001

Query: 783  AMVDANMGKFYIFSTPAKGTLIEIIFP 809
            AMV+AN  +F I S P +GT++EI+FP
Sbjct: 1002 AMVEANRAQFAIDSNPGQGTVVEIVFP 1028



 Score = 40.4 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 48/578 (8%), Positives = 124/578 (21%), Gaps = 117/578 (20%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +DA G +   S      +   A       L D+        +  +   ++  +       
Sbjct: 141 VDAVGKVVAASPRFA-LLDISAS-----TLEDLIVEAGDATDRIVKRRIRTGSHSVPGAI 194

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +   L++   +   P                         P      L++      
Sbjct: 195 ARLTDTPALHLLCIVGDAPAQ-------------FQTAAEAVPLPDNAEAVLEEILPEQG 241

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           +     +     +       +          +  +       D         L      +
Sbjct: 242 DAPAQQAQKTHAEQPRPKTFAFDHDAPPARFIWKVGP-----DGTFSEISPDLAAVVGPN 296

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
             +       ++         G++     E   +        L    +      P  +  
Sbjct: 297 SADIVGRRFSDVANVFGFDTDGSIAALLLERDTWSG----KRLLWPVEGTRLRVPVELAA 352

Query: 329 CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG-GLSTLLDAPKLSDNNAIKPVMLY 387
            P    VYS    F     F ++   ++  D E  G  L+  +   +       +   + 
Sbjct: 353 LP----VYSRDREFLGFRGFGIVRPAEAEADPEEIGLALAGGIPQNRKPRKEPAETARMV 408

Query: 388 RSDRTCI------------------AASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
             D                               + + +  +++     ++     +   
Sbjct: 409 GEDDVLALSEEVANDDQPAAVLPKPPLDITPTPGRRDSDKVISLLNSCAQEKVAADQAKF 468

Query: 430 QNGIEPEDVDT----RINKRKMEIEVMQLC------------------------------ 455
               E          +  +        +L                               
Sbjct: 469 LKEKERATRPEGGLTKTERNAFREIAERLRKQGLANTRAESETPVSETSSIEPVEPTPPV 528

Query: 456 ------------SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
                       ++L      + I + +  I   N+A+  + GY             L+ 
Sbjct: 529 KTRSEPIQPDETALLANLPVPVIIHSGD-AIHYVNQALLDITGYES-----------LDD 576

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
              +     L    S D       +   +   E+ +   +            L++  ++ 
Sbjct: 577 IRSAGGVDVLFNSESDDGETRQSMVLRHADGSEEPVDAHLNAIAWRGGRALMLSLMPVTA 636

Query: 564 W-KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
                  +L  A    ++      +       E++T L
Sbjct: 637 ADLPAPAELPAANDEEKQALEAHVE-------ELKTIL 667



 Score = 38.1 bits (87), Expect = 5.9,   Method: Composition-based stats.
 Identities = 35/299 (11%), Positives = 81/299 (27%), Gaps = 19/299 (6%)

Query: 8   SNPEDILTSNCKGNTQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNY 67
           + PE  LT   +   ++++++    G    +++ E P  ++                T  
Sbjct: 476 TRPEGGLTKTERNAFREIAERLRKQGLANTRAESETPVSETSSIEPVEPTP---PVKTRS 532

Query: 68  LDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI 127
              +           V     I +   +  +++ L    G  +   I      V  + + 
Sbjct: 533 EPIQPDETALLANLPVPVI--IHSGDAIHYVNQALLDITGYESLDDI-RSAGGVDVLFNS 589

Query: 128 DPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187
           + ++      + + +      L   +G+    P+D     I  R           +    
Sbjct: 590 ESDDG-----ETRQS----MVLRHADGSEE--PVDAHLNAIAWRGGRALMLSLMPV--TA 636

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247
                P  L    D++   L    +   ++     D      P   +R  N  +S    Y
Sbjct: 637 ADLPAPAELPAANDEEKQALEAHVEELKTILDTATDGVVLIDPEGRIRSMNHSASALFGY 696

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
              +   K          + +  +     + N            +   +K  F  L   
Sbjct: 697 ERDEAEGKFFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMT 755


>gi|254714821|ref|ZP_05176632.1| sensory box histidine kinase [Brucella ceti M644/93/1]
 gi|254717879|ref|ZP_05179690.1| sensory box histidine kinase [Brucella ceti M13/05/1]
 gi|261219725|ref|ZP_05934006.1| PAS/PAC sensor signal transduction histidine kinase [Brucella ceti
            M13/05/1]
 gi|261322615|ref|ZP_05961812.1| PAS/PAC sensor signal transduction histidine kinase [Brucella ceti
            M644/93/1]
 gi|260924814|gb|EEX91382.1| PAS/PAC sensor signal transduction histidine kinase [Brucella ceti
            M13/05/1]
 gi|261295305|gb|EEX98801.1| PAS/PAC sensor signal transduction histidine kinase [Brucella ceti
            M644/93/1]
          Length = 1035

 Score =  631 bits (1628), Expect = e-178,   Method: Composition-based stats.
 Identities = 275/807 (34%), Positives = 427/807 (52%), Gaps = 56/807 (6%)

Query: 43   NPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEEL 102
                D+  Q       ++    T        F FD      RF W +   G   EIS +L
Sbjct: 238  PEQGDAPAQQAQKTHAEQPRPKT--------FAFDHDAPPARFIWKVGPDGTFSEISPDL 289

Query: 103  PKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPID 162
               +G  +  ++G R  DV+++   D +  I  LL  ++TW GK  LWP+EGT L VP++
Sbjct: 290  AAVVGPNSADIVGRRFSDVANVFGFDTDGSIAALLLERDTWSGKRLLWPVEGTRLRVPVE 349

Query: 163  LAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEK--E 220
            LAALP+YSR+REF GFRGFGIV     + DP  +G  L        + +K  +   +   
Sbjct: 350  LAALPVYSRDREFLGFRGFGIVRPAEAEADPEEIGLALAGGIPQNRKPRKEPAETARMVG 409

Query: 221  KYDIFSQQS--------------------PPPHLRMKNKVSSLTEYYAHKDDV------L 254
            + D+ +                       P P  R  +KV SL    A +         L
Sbjct: 410  EDDVLALSEEVANDDQPAAVLPKPPLDITPTPGRRDSDKVISLLNSCAQEKVAADQAKFL 469

Query: 255  KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA- 313
            K ++         +  E+  F  I      +       ++ +  S         P+L   
Sbjct: 470  KEKERATRPEGGLTKTERNAFREIAERLRKQGLANTRAESETPVSETSSIEPVEPTLPVK 529

Query: 314  -YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
               +  +      +   P+P  ++S   + Y N + L +T Y+S+DDI  AGG+  L   
Sbjct: 530  TRSEPIQPDETALLANLPVPVIIHSGDAIHYVNQALLDITGYESLDDIRSAGGVDVLF-N 588

Query: 373  PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
             +  D    + ++L  +D +     A L+ I W    +L ++ +P   A+          
Sbjct: 589  SESDDGETRQSMVLRHADGSEEPVDAHLNAIAWRGGRALMLSLMPVTAADLPAPAELPAA 648

Query: 433  IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
                       K+ +E  V +L +IL+  +DG+ +I+ EG I S N + S LFGY  ++ 
Sbjct: 649  -------NDEEKQALEAHVEELKTILDTATDGVVLIDPEGRIRSMNHSASALFGYERDEA 701

Query: 493  LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPF 550
              K F++     +      YL  +    +   L   +  +G   +   + L + I KLP 
Sbjct: 702  EGKFFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPH 761

Query: 551  SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
            +  +   + DI++WK+ + +L++A+K AE+ S+ K++FLAR+SHEIRTPL AIIGFSE++
Sbjct: 762  TRGFCAVLRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELM 821

Query: 611  KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
             +++FGP+GN RY +Y   I+RSGN VL +VNDLLDISKIE+G +++ FE VSL++A+ E
Sbjct: 822  ADEKFGPIGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGE 881

Query: 671  AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
            AI+L+Q  AN +R++IR+SF +N+P I+AD RS+KQ+ALN+LSNA+ FT  GGQ+I+ST+
Sbjct: 882  AIALMQPQANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTS 941

Query: 731  HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ--------IPNSQQIRGEGTGLGLPLAK 782
            +  N +V++RVRDTG+GM+  E+E+A+KPF Q          +++  R EGTGLGLPL K
Sbjct: 942  YELNGDVVMRVRDTGIGMSKSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTK 1001

Query: 783  AMVDANMGKFYIFSTPAKGTLIEIIFP 809
            AMV+AN  +F I S P +GT++EI+FP
Sbjct: 1002 AMVEANRAQFAIDSNPGQGTVVEIVFP 1028



 Score = 40.4 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 48/578 (8%), Positives = 124/578 (21%), Gaps = 117/578 (20%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +DA G +   S      +   A       L D+        +  +   ++  +       
Sbjct: 141 VDAVGKVVAASPRFA-LLDISAS-----TLEDLIVEAGDATDRIVKRRIRTGSHSVPGAI 194

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +   L++   +   P                         P      L++      
Sbjct: 195 ARLTDTPALHLLCIVGDAPAQ-------------FQTAAEAVPLPDNAEAVLEEILPEQG 241

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           +     +     +       +          +  +       D         L      +
Sbjct: 242 DAPAQQAQKTHAEQPRPKTFAFDHDAPPARFIWKVGP-----DGTFSEISPDLAAVVGPN 296

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
             +       ++         G++     E   +        L    +      P  +  
Sbjct: 297 SADIVGRRFSDVANVFGFDTDGSIAALLLERDTWSG----KRLLWPVEGTRLRVPVELAA 352

Query: 329 CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG-GLSTLLDAPKLSDNNAIKPVMLY 387
            P    VYS    F     F ++   ++  D E  G  L+  +   +       +   + 
Sbjct: 353 LP----VYSRDREFLGFRGFGIVRPAEAEADPEEIGLALAGGIPQNRKPRKEPAETARMV 408

Query: 388 RSDRTCI------------------AASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
             D                               + + +  +++     ++     +   
Sbjct: 409 GEDDVLALSEEVANDDQPAAVLPKPPLDITPTPGRRDSDKVISLLNSCAQEKVAADQAKF 468

Query: 430 QNGIEPEDVDT----RINKRKMEIEVMQLC------------------------------ 455
               E          +  +        +L                               
Sbjct: 469 LKEKERATRPEGGLTKTERNAFREIAERLRKQGLANTRAESETPVSETSSIEPVEPTLPV 528

Query: 456 ------------SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
                       ++L      + I + +  I   N+A+  + GY             L+ 
Sbjct: 529 KTRSEPIQPDETALLANLPVPVIIHSGD-AIHYVNQALLDITGYES-----------LDD 576

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
              +     L    S D       +   +   E+ +   +            L++  ++ 
Sbjct: 577 IRSAGGVDVLFNSESDDGETRQSMVLRHADGSEEPVDAHLNAIAWRGGRALMLSLMPVTA 636

Query: 564 W-KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
                  +L  A    ++      +       E++T L
Sbjct: 637 ADLPAPAELPAANDEEKQALEAHVE-------ELKTIL 667


>gi|256061652|ref|ZP_05451791.1| sensory box histidine kinase [Brucella neotomae 5K33]
 gi|261325661|ref|ZP_05964858.1| PAS/PAC sensor signal transduction histidine kinase [Brucella
            neotomae 5K33]
 gi|261301641|gb|EEY05138.1| PAS/PAC sensor signal transduction histidine kinase [Brucella
            neotomae 5K33]
          Length = 1035

 Score =  631 bits (1628), Expect = e-178,   Method: Composition-based stats.
 Identities = 274/807 (33%), Positives = 426/807 (52%), Gaps = 56/807 (6%)

Query: 43   NPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEEL 102
                D+  Q       ++    T        F FD      RF W +   G   EIS +L
Sbjct: 238  PEQGDAPAQQAQKTHAEQPRPKT--------FAFDHDAPPARFIWKVGPDGTFSEISPDL 289

Query: 103  PKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPID 162
               +G  +  ++G R  DV+++   D +  I  LL  ++TW GK  LWP+EGT L VP++
Sbjct: 290  AAVVGPNSADIVGRRFSDVANVFGFDTDGSIAALLLERDTWSGKRLLWPVEGTRLRVPVE 349

Query: 163  LAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEK--E 220
            LAALP+YSR+REF GFRGFGIV     + DP  +G  L        + +K  +   +   
Sbjct: 350  LAALPVYSRDREFLGFRGFGIVRPAEAEADPEEIGLALAGGIPQNRKPRKEPAETARMVG 409

Query: 221  KYDIFSQQS--------------------PPPHLRMKNKVSSLTEYYAHKDDV------L 254
            + D+ +                       P P  R  +KV SL    A +         L
Sbjct: 410  EDDVLALSEEVANDDQPAAVLPKPPLDITPTPGRRDSDKVISLLNSCAQEKVAADQAKFL 469

Query: 255  KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA- 313
            K ++         +  E+  F  I      +       ++ +  S         P+    
Sbjct: 470  KEKERATRPEGGLTKTERNAFREIAERLRKQGLANTRAESETPVSETSSIEPVEPTPPVK 529

Query: 314  -YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
               +  +      +   P+P  ++S   + Y N + L +T Y+S+DDI  AGG+  L   
Sbjct: 530  TRSEPIQPDETALLANLPVPVIIHSGDAIHYVNQALLDITGYESLDDIRSAGGVDVLF-N 588

Query: 373  PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
             +  D    + ++L  +D +     A L+ I W    +L ++ +P   A+          
Sbjct: 589  SESDDGETRQSMVLRHADGSEEPVDAHLNAIAWRGGRALMLSLMPVTAADLPAPAELPAA 648

Query: 433  IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
                       K+ +E  V +L +IL+  +DG+ +I+ EG I S N + S LFGY  ++ 
Sbjct: 649  -------NDEEKQALEAHVEELKTILDTATDGVVLIDPEGRIRSMNHSASALFGYERDEA 701

Query: 493  LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPF 550
              K F++     +      YL  +    +   L   +  +G   +   + L + I KLP 
Sbjct: 702  EGKFFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPH 761

Query: 551  SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
            +  +   + DI++WK+ + +L++A+K AE+ S+ K++FLAR+SHEIRTPL AIIGFSE++
Sbjct: 762  TRGFCAVLRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELM 821

Query: 611  KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
             +++FGP+GN RY +Y   I+RSGN VL +VNDLLDISKIE+G +++ FE VSL++A+ E
Sbjct: 822  ADEKFGPIGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGE 881

Query: 671  AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
            AI+L+Q  AN +R++IR+SF +N+P I+AD RS+KQ+ALN+LSNA+ FT  GGQ+I+ST+
Sbjct: 882  AIALMQPQANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTS 941

Query: 731  HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ--------IPNSQQIRGEGTGLGLPLAK 782
            +  N +V++RVRDTG+GM+  E+E+A+KPF Q          +++  R EGTGLGLPL K
Sbjct: 942  YELNGDVVMRVRDTGIGMSKSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTK 1001

Query: 783  AMVDANMGKFYIFSTPAKGTLIEIIFP 809
            AMV+AN  +F I S P +GT++EI+FP
Sbjct: 1002 AMVEANRAQFAIDSNPGQGTVVEIVFP 1028



 Score = 40.8 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 49/578 (8%), Positives = 124/578 (21%), Gaps = 117/578 (20%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +DA G +   S      +   A       L D+        +  I   ++  +       
Sbjct: 141 VDAVGKVVAASPRFA-LLDISAS-----TLEDLIVEAGDATDRIIKRRIRTGSHSVPGAI 194

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +   L++   +   P                         P      L++      
Sbjct: 195 ARLTDTPALHLLCIVGDAPAQ-------------FQTAAEAVPLPDNAEAVLEEILPEQG 241

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           +     +     +       +          +  +       D         L      +
Sbjct: 242 DAPAQQAQKTHAEQPRPKTFAFDHDAPPARFIWKVGP-----DGTFSEISPDLAAVVGPN 296

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
             +       ++         G++     E   +        L    +      P  +  
Sbjct: 297 SADIVGRRFSDVANVFGFDTDGSIAALLLERDTWSG----KRLLWPVEGTRLRVPVELAA 352

Query: 329 CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG-GLSTLLDAPKLSDNNAIKPVMLY 387
            P    VYS    F     F ++   ++  D E  G  L+  +   +       +   + 
Sbjct: 353 LP----VYSRDREFLGFRGFGIVRPAEAEADPEEIGLALAGGIPQNRKPRKEPAETARMV 408

Query: 388 RSDRTCI------------------AASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
             D                               + + +  +++     ++     +   
Sbjct: 409 GEDDVLALSEEVANDDQPAAVLPKPPLDITPTPGRRDSDKVISLLNSCAQEKVAADQAKF 468

Query: 430 QNGIEPEDVDT----RINKRKMEIEVMQLC------------------------------ 455
               E          +  +        +L                               
Sbjct: 469 LKEKERATRPEGGLTKTERNAFREIAERLRKQGLANTRAESETPVSETSSIEPVEPTPPV 528

Query: 456 ------------SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
                       ++L      + I + +  I   N+A+  + GY             L+ 
Sbjct: 529 KTRSEPIQPDETALLANLPVPVIIHSGD-AIHYVNQALLDITGYES-----------LDD 576

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
              +     L    S D       +   +   E+ +   +            L++  ++ 
Sbjct: 577 IRSAGGVDVLFNSESDDGETRQSMVLRHADGSEEPVDAHLNAIAWRGGRALMLSLMPVTA 636

Query: 564 W-KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
                  +L  A    ++      +       E++T L
Sbjct: 637 ADLPAPAELPAANDEEKQALEAHVE-------ELKTIL 667



 Score = 38.1 bits (87), Expect = 6.0,   Method: Composition-based stats.
 Identities = 35/299 (11%), Positives = 81/299 (27%), Gaps = 19/299 (6%)

Query: 8   SNPEDILTSNCKGNTQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNY 67
           + PE  LT   +   ++++++    G    +++ E P  ++                T  
Sbjct: 476 TRPEGGLTKTERNAFREIAERLRKQGLANTRAESETPVSETSSIEPVEPTP---PVKTRS 532

Query: 68  LDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI 127
              +           V     I +   +  +++ L    G  +   I      V  + + 
Sbjct: 533 EPIQPDETALLANLPVPVI--IHSGDAIHYVNQALLDITGYESLDDI-RSAGGVDVLFNS 589

Query: 128 DPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187
           + ++      + + +      L   +G+    P+D     I  R           +    
Sbjct: 590 ESDDG-----ETRQS----MVLRHADGSEE--PVDAHLNAIAWRGGRALMLSLMPV--TA 636

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247
                P  L    D++   L    +   ++     D      P   +R  N  +S    Y
Sbjct: 637 ADLPAPAELPAANDEEKQALEAHVEELKTILDTATDGVVLIDPEGRIRSMNHSASALFGY 696

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
              +   K          + +  +     + N            +   +K  F  L   
Sbjct: 697 ERDEAEGKFFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMT 755


>gi|254689786|ref|ZP_05153040.1| sensory box histidine kinase [Brucella abortus bv. 6 str. 870]
 gi|256258039|ref|ZP_05463575.1| sensory box histidine kinase [Brucella abortus bv. 9 str. C68]
 gi|260755316|ref|ZP_05867664.1| PAS/PAC sensor signal transduction histidine kinase [Brucella abortus
            bv. 6 str. 870]
 gi|260884335|ref|ZP_05895949.1| PAS/PAC sensor signal transduction histidine kinase [Brucella abortus
            bv. 9 str. C68]
 gi|297248868|ref|ZP_06932586.1| cell-division control histidine kinase pdhS [Brucella abortus bv. 5
            str. B3196]
 gi|260675424|gb|EEX62245.1| PAS/PAC sensor signal transduction histidine kinase [Brucella abortus
            bv. 6 str. 870]
 gi|260873863|gb|EEX80932.1| PAS/PAC sensor signal transduction histidine kinase [Brucella abortus
            bv. 9 str. C68]
 gi|297176037|gb|EFH35384.1| cell-division control histidine kinase pdhS [Brucella abortus bv. 5
            str. B3196]
          Length = 1035

 Score =  631 bits (1627), Expect = e-178,   Method: Composition-based stats.
 Identities = 274/807 (33%), Positives = 426/807 (52%), Gaps = 56/807 (6%)

Query: 43   NPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEEL 102
                D+  Q       ++    T        F FD      RF W +   G   EIS +L
Sbjct: 238  PEQGDAPAQQAQKTHAEQPRPKT--------FAFDHDAPPARFIWKVGPDGTFSEISPDL 289

Query: 103  PKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPID 162
               +G  +  ++G R  DV+++   D +  I  LL  ++TW GK  LWP+EGT L VP++
Sbjct: 290  AAVVGPNSADIVGRRFSDVANVFGFDTDGSIAALLLERDTWSGKRLLWPVEGTRLRVPVE 349

Query: 163  LAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEK--E 220
            LAALP+YSR+REF GFRGFGIV     + DP  +G  L        + +K  +   +   
Sbjct: 350  LAALPVYSRDREFLGFRGFGIVRPAEAEADPEEIGLALAGGIPQNRKPRKEPAETARMVG 409

Query: 221  KYDIFSQQS--------------------PPPHLRMKNKVSSLTEYYAHKDDV------L 254
            + D+ +                       P P  R  +KV SL    A +         L
Sbjct: 410  EDDVLALSEEVANDDQPAAVLPKPPLDITPTPGRRDSDKVISLLNSCAQEKVAADQAKFL 469

Query: 255  KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA- 313
            K ++         +  E+  F  I      +       ++ +  S         P+    
Sbjct: 470  KEKERATRPEGGLTKTERNAFREIAERLRKQGLANTRAESETPVSETSSIEPVEPTPPVK 529

Query: 314  -YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
               +  +      +   P+P  ++S   + Y N + L +T Y+S+DDI  AGG+  L   
Sbjct: 530  TRSEPIQPDETALLANLPVPVIIHSGDAIHYVNQALLDITGYESLDDIRSAGGVDVLF-N 588

Query: 373  PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
             +  D    + ++L  +D +     A L+ I W    +L ++ +P   A+          
Sbjct: 589  SESDDGETRQSMLLRHADGSEEPVDAHLNAIAWRGGRALMLSLMPVTAADLPAPAELPAA 648

Query: 433  IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
                       K+ +E  V +L +IL+  +DG+ +I+ EG I S N + S LFGY  ++ 
Sbjct: 649  -------NDEEKQALEAHVEELKTILDTATDGVVLIDPEGRIRSMNHSASALFGYERDEA 701

Query: 493  LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPF 550
              K F++     +      YL  +    +   L   +  +G   +   + L + I KLP 
Sbjct: 702  EGKFFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPH 761

Query: 551  SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
            +  +   + DI++WK+ + +L++A+K AE+ S+ K++FLAR+SHEIRTPL AIIGFSE++
Sbjct: 762  TRGFCAVLRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELM 821

Query: 611  KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
             +++FGP+GN RY +Y   I+RSGN VL +VNDLLDISKIE+G +++ FE VSL++A+ E
Sbjct: 822  ADEKFGPIGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGE 881

Query: 671  AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
            AI+L+Q  AN +R++IR+SF +N+P I+AD RS+KQ+ALN+LSNA+ FT  GGQ+I+ST+
Sbjct: 882  AIALMQPQANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTS 941

Query: 731  HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ--------IPNSQQIRGEGTGLGLPLAK 782
            +  N +V++RVRDTG+GM+  E+E+A+KPF Q          +++  R EGTGLGLPL K
Sbjct: 942  YELNGDVVMRVRDTGIGMSKSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTK 1001

Query: 783  AMVDANMGKFYIFSTPAKGTLIEIIFP 809
            AMV+AN  +F I S P +GT++EI+FP
Sbjct: 1002 AMVEANRAQFAIDSNPGQGTVVEIVFP 1028



 Score = 39.6 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 48/578 (8%), Positives = 124/578 (21%), Gaps = 117/578 (20%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +DA G +   S      +   A       L D+        +  +   ++  +       
Sbjct: 141 VDAVGKVVAASPRFA-LLDISAS-----TLEDLIVEAGDATDRIVKRRIRTGSHSVPGAI 194

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +   L++   +   P                         P      L++      
Sbjct: 195 ARLTDTPALHLLCIVGDAPAQ-------------FQTAAEAVPLPDNAEAVLEEILPEQG 241

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           +     +     +       +          +  +       D         L      +
Sbjct: 242 DAPAQQAQKTHAEQPRPKTFAFDHDAPPARFIWKVGP-----DGTFSEISPDLAAVVGPN 296

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
             +       ++         G++     E   +        L    +      P  +  
Sbjct: 297 SADIVGRRFSDVANVFGFDTDGSIAALLLERDTWSG----KRLLWPVEGTRLRVPVELAA 352

Query: 329 CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG-GLSTLLDAPKLSDNNAIKPVMLY 387
            P    VYS    F     F ++   ++  D E  G  L+  +   +       +   + 
Sbjct: 353 LP----VYSRDREFLGFRGFGIVRPAEAEADPEEIGLALAGGIPQNRKPRKEPAETARMV 408

Query: 388 RSDRTCI------------------AASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
             D                               + + +  +++     ++     +   
Sbjct: 409 GEDDVLALSEEVANDDQPAAVLPKPPLDITPTPGRRDSDKVISLLNSCAQEKVAADQAKF 468

Query: 430 QNGIEPEDVDT----RINKRKMEIEVMQLC------------------------------ 455
               E          +  +        +L                               
Sbjct: 469 LKEKERATRPEGGLTKTERNAFREIAERLRKQGLANTRAESETPVSETSSIEPVEPTPPV 528

Query: 456 ------------SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
                       ++L      + I + +  I   N+A+  + GY             L+ 
Sbjct: 529 KTRSEPIQPDETALLANLPVPVIIHSGD-AIHYVNQALLDITGYES-----------LDD 576

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
              +     L    S D       +   +   E+ +   +            L++  ++ 
Sbjct: 577 IRSAGGVDVLFNSESDDGETRQSMLLRHADGSEEPVDAHLNAIAWRGGRALMLSLMPVTA 636

Query: 564 W-KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
                  +L  A    ++      +       E++T L
Sbjct: 637 ADLPAPAELPAANDEEKQALEAHVE-------ELKTIL 667



 Score = 38.1 bits (87), Expect = 5.8,   Method: Composition-based stats.
 Identities = 35/299 (11%), Positives = 81/299 (27%), Gaps = 19/299 (6%)

Query: 8   SNPEDILTSNCKGNTQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNY 67
           + PE  LT   +   ++++++    G    +++ E P  ++                T  
Sbjct: 476 TRPEGGLTKTERNAFREIAERLRKQGLANTRAESETPVSETSSIEPVEPTP---PVKTRS 532

Query: 68  LDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI 127
              +           V     I +   +  +++ L    G  +   I      V  + + 
Sbjct: 533 EPIQPDETALLANLPVPVI--IHSGDAIHYVNQALLDITGYESLDDI-RSAGGVDVLFNS 589

Query: 128 DPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187
           + ++      + + +      L   +G+    P+D     I  R           +    
Sbjct: 590 ESDDG-----ETRQS----MLLRHADGSEE--PVDAHLNAIAWRGGRALMLSLMPV--TA 636

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247
                P  L    D++   L    +   ++     D      P   +R  N  +S    Y
Sbjct: 637 ADLPAPAELPAANDEEKQALEAHVEELKTILDTATDGVVLIDPEGRIRSMNHSASALFGY 696

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
              +   K          + +  +     + N            +   +K  F  L   
Sbjct: 697 ERDEAEGKFFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMT 755


>gi|254694275|ref|ZP_05156103.1| sensory box histidine kinase [Brucella abortus bv. 3 str. Tulya]
 gi|261214583|ref|ZP_05928864.1| PAS/PAC sensor signal transduction histidine kinase [Brucella abortus
            bv. 3 str. Tulya]
 gi|260916190|gb|EEX83051.1| PAS/PAC sensor signal transduction histidine kinase [Brucella abortus
            bv. 3 str. Tulya]
          Length = 1035

 Score =  631 bits (1627), Expect = e-178,   Method: Composition-based stats.
 Identities = 275/807 (34%), Positives = 426/807 (52%), Gaps = 56/807 (6%)

Query: 43   NPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEEL 102
                D+  Q       ++    T        F FD      RF W +   G   EIS +L
Sbjct: 238  PEQGDAPAQQAQKTHAEQPRPKT--------FAFDHDAPPARFIWKVGPDGTFSEISPDL 289

Query: 103  PKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPID 162
               IG  +  ++G R  DV+++   D +  I  LL  ++TW GK  LWP+EGT L VP++
Sbjct: 290  AAVIGPNSADIVGRRFSDVANVFGFDTDGSIAALLLERDTWSGKRLLWPVEGTRLRVPVE 349

Query: 163  LAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEK--E 220
            LAALP+YSR+REF GFRGFGIV     + DP  +G  L        + +K  +   +   
Sbjct: 350  LAALPVYSRDREFLGFRGFGIVRPAEAEADPEEIGLALAGGIPQNRKPRKEPAETARMVG 409

Query: 221  KYDIFSQQS--------------------PPPHLRMKNKVSSLTEYYAHKDDV------L 254
            + D+ +                       P P  R  +KV SL    A +         L
Sbjct: 410  EDDVLALSEEVANDDQPAAVLPKPPLDITPTPGRRDSDKVISLLNSCAQEKVAADQAKFL 469

Query: 255  KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA- 313
            K ++         +  E+  F  I      +       ++ +  S         P+    
Sbjct: 470  KEKERATRPEGGLTKTERNAFREIAERLRKQGLANTRAESETPVSETSSIEPVEPTPPVK 529

Query: 314  -YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
               +  +      +   P+P  ++S   + Y N + L +T Y+S+DDI  AGG+  L   
Sbjct: 530  TRSEPIQPDETALLANLPVPVIIHSGDAIHYVNQALLDITGYESLDDIRSAGGVDVLF-N 588

Query: 373  PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
             +  D    + ++L  +D +     A L+ I W    +L ++ +P   A+          
Sbjct: 589  SESDDGETRQSMLLRHADGSEEPVDAHLNAIAWRGGRALMLSLMPVTAADLPAPAELPAA 648

Query: 433  IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
                       K+ +E  V +L +IL+  +DG+ +I+ EG I S N + S LFGY  ++ 
Sbjct: 649  -------NDEEKQALEAHVEELKTILDTATDGVVLIDPEGRIRSMNHSASALFGYERDEA 701

Query: 493  LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPF 550
              K F++     +      YL  +    +   L   +  +G   +   + L + I KLP 
Sbjct: 702  EGKFFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPH 761

Query: 551  SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
            +  +   + DI++WK+ + +L++A+K AE+ S+ K++FLAR+SHEIRTPL AIIGFSE++
Sbjct: 762  TRGFCAVLRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELM 821

Query: 611  KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
             +++FGP+GN RY +Y   I+RSGN VL +VNDLLDISKIE+G +++ FE VSL++A+ E
Sbjct: 822  ADEKFGPIGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGE 881

Query: 671  AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
            AI+L+Q  AN +R++IR+SF +N+P I+AD RS+KQ+ALN+LSNA+ FT  GGQ+I+ST+
Sbjct: 882  AIALMQPQANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTS 941

Query: 731  HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ--------IPNSQQIRGEGTGLGLPLAK 782
            +  N +V++RVRDTG+GM+  E+E+A+KPF Q          +++  R EGTGLGLPL K
Sbjct: 942  YELNGDVVMRVRDTGIGMSKSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTK 1001

Query: 783  AMVDANMGKFYIFSTPAKGTLIEIIFP 809
            AMV+AN  +F I S P +GT++EI+FP
Sbjct: 1002 AMVEANRAQFAIDSNPGQGTVVEIVFP 1028



 Score = 40.4 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 48/578 (8%), Positives = 125/578 (21%), Gaps = 117/578 (20%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +DA G +   S      +   A       L D+        +  +   ++  +       
Sbjct: 141 VDAVGKVVAASPRFA-LLDISAS-----TLEDLIVEAGDATDRIVKRRIRTGSHSVPGAI 194

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +   L++        +     +F                 P      L++      
Sbjct: 195 ARLTDTPALHLLCI-----VGDAQAQFQ--------TAAEAVPLPDNAEAVLEEILPEQG 241

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           +     +     +       +          +  +       D         L      +
Sbjct: 242 DAPAQQAQKTHAEQPRPKTFAFDHDAPPARFIWKVGP-----DGTFSEISPDLAAVIGPN 296

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
             +       ++         G++     E   +        L    +      P  +  
Sbjct: 297 SADIVGRRFSDVANVFGFDTDGSIAALLLERDTWSG----KRLLWPVEGTRLRVPVELAA 352

Query: 329 CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG-GLSTLLDAPKLSDNNAIKPVMLY 387
            P    VYS    F     F ++   ++  D E  G  L+  +   +       +   + 
Sbjct: 353 LP----VYSRDREFLGFRGFGIVRPAEAEADPEEIGLALAGGIPQNRKPRKEPAETARMV 408

Query: 388 RSDRTCI------------------AASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
             D                               + + +  +++     ++     +   
Sbjct: 409 GEDDVLALSEEVANDDQPAAVLPKPPLDITPTPGRRDSDKVISLLNSCAQEKVAADQAKF 468

Query: 430 QNGIEPEDVDT----RINKRKMEIEVMQLC------------------------------ 455
               E          +  +        +L                               
Sbjct: 469 LKEKERATRPEGGLTKTERNAFREIAERLRKQGLANTRAESETPVSETSSIEPVEPTPPV 528

Query: 456 ------------SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
                       ++L      + I + +  I   N+A+  + GY             L+ 
Sbjct: 529 KTRSEPIQPDETALLANLPVPVIIHSGD-AIHYVNQALLDITGYES-----------LDD 576

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
              +     L    S D       +   +   E+ +   +            L++  ++ 
Sbjct: 577 IRSAGGVDVLFNSESDDGETRQSMLLRHADGSEEPVDAHLNAIAWRGGRALMLSLMPVTA 636

Query: 564 W-KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
                  +L  A    ++      +       E++T L
Sbjct: 637 ADLPAPAELPAANDEEKQALEAHVE-------ELKTIL 667



 Score = 38.1 bits (87), Expect = 5.8,   Method: Composition-based stats.
 Identities = 35/299 (11%), Positives = 81/299 (27%), Gaps = 19/299 (6%)

Query: 8   SNPEDILTSNCKGNTQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNY 67
           + PE  LT   +   ++++++    G    +++ E P  ++                T  
Sbjct: 476 TRPEGGLTKTERNAFREIAERLRKQGLANTRAESETPVSETSSIEPVEPTP---PVKTRS 532

Query: 68  LDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI 127
              +           V     I +   +  +++ L    G  +   I      V  + + 
Sbjct: 533 EPIQPDETALLANLPVPVI--IHSGDAIHYVNQALLDITGYESLDDI-RSAGGVDVLFNS 589

Query: 128 DPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187
           + ++      + + +      L   +G+    P+D     I  R           +    
Sbjct: 590 ESDDG-----ETRQS----MLLRHADGSEE--PVDAHLNAIAWRGGRALMLSLMPV--TA 636

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247
                P  L    D++   L    +   ++     D      P   +R  N  +S    Y
Sbjct: 637 ADLPAPAELPAANDEEKQALEAHVEELKTILDTATDGVVLIDPEGRIRSMNHSASALFGY 696

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
              +   K          + +  +     + N            +   +K  F  L   
Sbjct: 697 ERDEAEGKFFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMT 755


>gi|153011243|ref|YP_001372457.1| PAS/PAC sensor signal transduction histidine kinase [Ochrobactrum
            anthropi ATCC 49188]
 gi|223635612|sp|A6X5X4|PDHS_OCHA4 RecName: Full=Cell-division control histidine kinase pdhS
 gi|151563131|gb|ABS16628.1| PAS/PAC sensor signal transduction histidine kinase [Ochrobactrum
            anthropi ATCC 49188]
          Length = 1055

 Score =  630 bits (1625), Expect = e-178,   Method: Composition-based stats.
 Identities = 275/794 (34%), Positives = 426/794 (53%), Gaps = 58/794 (7%)

Query: 73   TFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH 132
            +FVF+      RF W +   G   EIS +L  TIG  A  ++G R  DV+++   DP+  
Sbjct: 256  SFVFEQDAPPARFIWKVGPDGTFSEISPDLAATIGPNAADVVGRRFADVANVFGFDPDGS 315

Query: 133  IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192
            I  LL +++TW GK  +WP+EGT+L VP++LAALP+YSR+REF+GFRGFG+V     + D
Sbjct: 316  IAALLDKRDTWSGKRLMWPVEGTDLRVPVELAALPVYSRDREFTGFRGFGLVRPAEAEKD 375

Query: 193  PRALGKRLDKKFSHLH----EIKKGHSSVEKEKYDIFSQQ------------------SP 230
            P  +G  L            E  +  + VE +      ++                  +P
Sbjct: 376  PEEIGLVLAGGIPQARKPVSEPVETATPVEDDDVLALGEEVANDDSPVATLPKPPLDIAP 435

Query: 231  PPHLRMKNKVSSL------TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYT 284
             P  R  +KV SL       +  A +  +LK  +         +  E+  F  I      
Sbjct: 436  TPGRRESDKVISLLNACAEEKVAADQARMLKEREREERPEGGLTKTERNAFREIADRLRK 495

Query: 285  KKQYFGTLQNNSKESFEY-------------------LSHRNHPSLSAYFDEGENLTPET 325
            +       +  +    +                           +               
Sbjct: 496  QGLANSRAETETVAISDEPVIDSSQPVEKTEVKASLIDEVTADEASLPSSGMAYGDETAL 555

Query: 326  VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
            +   P+P  ++S   + Y N + L LT Y+S+DDI  AGG+  L ++           ++
Sbjct: 556  LANLPVPVIIHSGDKIHYVNQALLDLTGYESLDDIRGAGGVDVLFNSESDDGETRQG-MV 614

Query: 386  LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
            L R++ +     A L+ I W    +L ++ +P   A    E +      P  +D    K+
Sbjct: 615  LRRANGSEEPVDAHLNAISWREGRALMLSLMPVAAAPVSVEAVAAPAEAPVAIDKDDEKQ 674

Query: 446  KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
             +   V +L +IL+  +DG+ +I+ EG I S N + S LFGY  ++   K F++     +
Sbjct: 675  ALADHVEELKTILDTATDGVVLIDPEGRIRSMNHSASALFGYERDETEGKFFSMLFAIES 734

Query: 506  PSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                  YL  +    +   L   +  +G   +   + L + I KLP +  +   + DI++
Sbjct: 735  QRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPHTRGFCAVLRDITQ 794

Query: 564  WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            WK+ + +L++A+K AE+ SS K++FLAR+SHEIRTPL AIIGFSE++ +++FG +GN RY
Sbjct: 795  WKRTEEELTNARKEAERASSQKTEFLARISHEIRTPLNAIIGFSELMADEKFGSIGNDRY 854

Query: 624  IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
             +Y   I+RSGN VL +VNDLLDISKIE+G +++ FE VSL++A++EAI+L+Q  AN +R
Sbjct: 855  RDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIAEAIALMQPQANRER 914

Query: 684  ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
            ++IR+SF +N+P I+AD RS+KQ+ALN+LSNA+ FT  GGQ+I+ST++  N +V++RVRD
Sbjct: 915  VIIRSSFQSNLPDIVADTRSIKQVALNLLSNAVRFTAPGGQVIVSTSYEMNGDVVMRVRD 974

Query: 744  TGVGMTNYELEKAMKPFGQIPNSQQIR--------GEGTGLGLPLAKAMVDANMGKFYIF 795
            TG+GMT  E+E+A+KPF Q+   ++ +         EGTGLGLPL KAMV+AN  +F I 
Sbjct: 975  TGIGMTKSEVEQALKPFRQVNALERRKAETAKDWRSEGTGLGLPLTKAMVEANRAQFAID 1034

Query: 796  STPAKGTLIEIIFP 809
            STP  GT++EI FP
Sbjct: 1035 STPGHGTVVEIAFP 1048


>gi|23502469|ref|NP_698596.1| sensory box histidine kinase [Brucella suis 1330]
 gi|81752215|sp|Q8FZ86|PDHS_BRUSU RecName: Full=Cell-division control histidine kinase pdhS
 gi|23348461|gb|AAN30511.1| sensory box histidine kinase [Brucella suis 1330]
          Length = 1035

 Score =  629 bits (1622), Expect = e-178,   Method: Composition-based stats.
 Identities = 273/807 (33%), Positives = 425/807 (52%), Gaps = 56/807 (6%)

Query: 43   NPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEEL 102
                D+  Q       ++    T        F FD      RF W +   G   EIS +L
Sbjct: 238  PEQGDAPAQQAQKTHAEQPRPKT--------FAFDHDAPPARFIWKVGPDGTFSEISPDL 289

Query: 103  PKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPID 162
               +G  +  ++G R  DV+++     +  I  LL  ++TW GK  LWP+EGT L VP++
Sbjct: 290  AAVVGPNSADIVGRRFSDVANVFGFYTDGSIAALLLERDTWSGKRLLWPVEGTRLRVPVE 349

Query: 163  LAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEK--E 220
            LAALP+YSR+REF GFRGFGIV     + DP  +G  L        + +K  +   +   
Sbjct: 350  LAALPVYSRDREFLGFRGFGIVRPAEAEADPEEIGLALAGGIPQNRKPRKEPAETARMVG 409

Query: 221  KYDIFSQQS--------------------PPPHLRMKNKVSSLTEYYAHKDDV------L 254
            + D+ +                       P P  R  +KV SL    A +         L
Sbjct: 410  EDDVLALSEEVANDDQPAAVLPKPPLDITPTPGRRDSDKVISLLNSCAQEKVAADQAKFL 469

Query: 255  KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA- 313
            K ++         +  E+  F  I      +       ++ +  S         P+    
Sbjct: 470  KEKERATRPEGGLTKTERNAFREIAERLRKQGLANTRAESETPVSETSSIEPVEPTPPVK 529

Query: 314  -YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
               +  +      +   P+P  ++S   + Y N + L +T Y+S+DDI  AGG+  L   
Sbjct: 530  TRSEPIQPDETALLANLPVPVIIHSGDAIHYVNQALLDITGYESLDDIRSAGGVDVLF-N 588

Query: 373  PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
             +  D    + ++L  +D +     A L+ I W    +L ++ +P   A+          
Sbjct: 589  SESDDGETRQSMVLRHADGSEEPVDAHLNAIAWRGGRALMLSLMPVTAADLPAPAELPAA 648

Query: 433  IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
                       K+ +E  V +L +IL+  +DG+ +I+ EG I S N + S LFGY  ++ 
Sbjct: 649  -------NDEEKQALEAHVEELKTILDTATDGVVLIDPEGRIRSMNHSASALFGYERDEA 701

Query: 493  LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPF 550
              K F++     +      YL  +    +   L   +  +G   +   + L + I KLP 
Sbjct: 702  EGKFFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPH 761

Query: 551  SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
            +  +   + DI++WK+ + +L++A+K AE+ S+ K++FLAR+SHEIRTPL AIIGFSE++
Sbjct: 762  TRGFCAVLRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELM 821

Query: 611  KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
             +++FGP+GN RY +Y   I+RSGN VL +VNDLLDISKIE+G +++ FE VSL++A+ E
Sbjct: 822  ADEKFGPIGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGE 881

Query: 671  AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
            AI+L+Q  AN +R++IR+SF +N+P I+AD RS+KQ+ALN+LSNA+ FT  GGQ+I+ST+
Sbjct: 882  AIALMQPQANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTS 941

Query: 731  HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ--------IPNSQQIRGEGTGLGLPLAK 782
            +  N +V++RVRDTG+GM+  E+E+A+KPF Q          +++  R EGTGLGLPL K
Sbjct: 942  YELNGDVVMRVRDTGIGMSKSEVEQALKPFRQINALEGRKAESAKDWRNEGTGLGLPLTK 1001

Query: 783  AMVDANMGKFYIFSTPAKGTLIEIIFP 809
            AMV+AN  +F I S P +GT++EI+FP
Sbjct: 1002 AMVEANRAQFAIDSNPGQGTVVEIVFP 1028



 Score = 38.5 bits (88), Expect = 5.1,   Method: Composition-based stats.
 Identities = 35/299 (11%), Positives = 81/299 (27%), Gaps = 19/299 (6%)

Query: 8   SNPEDILTSNCKGNTQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNY 67
           + PE  LT   +   ++++++    G    +++ E P  ++                T  
Sbjct: 476 TRPEGGLTKTERNAFREIAERLRKQGLANTRAESETPVSETSSIEPVEPTP---PVKTRS 532

Query: 68  LDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI 127
              +           V     I +   +  +++ L    G  +   I      V  + + 
Sbjct: 533 EPIQPDETALLANLPVPVI--IHSGDAIHYVNQALLDITGYESLDDI-RSAGGVDVLFNS 589

Query: 128 DPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187
           + ++      + + +      L   +G+    P+D     I  R           +    
Sbjct: 590 ESDDG-----ETRQS----MVLRHADGSEE--PVDAHLNAIAWRGGRALMLSLMPV--TA 636

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247
                P  L    D++   L    +   ++     D      P   +R  N  +S    Y
Sbjct: 637 ADLPAPAELPAANDEEKQALEAHVEELKTILDTATDGVVLIDPEGRIRSMNHSASALFGY 696

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
              +   K          + +  +     + N            +   +K  F  L   
Sbjct: 697 ERDEAEGKFFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMT 755


>gi|254708265|ref|ZP_05170093.1| sensory box histidine kinase [Brucella pinnipedialis M163/99/10]
 gi|261315765|ref|ZP_05954962.1| PAS/PAC sensor signal transduction histidine kinase [Brucella
            pinnipedialis M163/99/10]
 gi|261304791|gb|EEY08288.1| PAS/PAC sensor signal transduction histidine kinase [Brucella
            pinnipedialis M163/99/10]
          Length = 1035

 Score =  628 bits (1620), Expect = e-177,   Method: Composition-based stats.
 Identities = 274/807 (33%), Positives = 426/807 (52%), Gaps = 56/807 (6%)

Query: 43   NPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEEL 102
                D+  Q       ++    T        F FD      RF W +   G   EIS +L
Sbjct: 238  PEQGDAPAQQAQKTHAEQPRPKT--------FAFDHDAPPARFIWKVGPDGTFSEISPDL 289

Query: 103  PKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPID 162
               +G  +  ++G R  DV+++   D +  I  LL  ++TW GK  LWP+EGT L VP++
Sbjct: 290  AAVVGPNSADIVGRRFSDVANVFGFDTDGSIAALLLERDTWSGKRLLWPVEGTRLRVPVE 349

Query: 163  LAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEK--E 220
            LAALP+YSR+REF GFRGFGIV     + DP  +G  L        + +K  +   +   
Sbjct: 350  LAALPVYSRDREFLGFRGFGIVRPAEAEADPEEIGLALAGGIPQNRKPRKEPAETARMVG 409

Query: 221  KYDIFSQQS--------------------PPPHLRMKNKVSSLTEYYAHKDDV------L 254
            + D+ +                       P P  R  +KV SL    A +         L
Sbjct: 410  EDDVLALSEEVANDDQPAAVLPKPPLDITPTPGRRDSDKVISLLNSCAQEKVAADQAKFL 469

Query: 255  KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA- 313
            K ++         +  E+  F  I      +       ++ +  S         P+    
Sbjct: 470  KEKERATRPEGGLTKTERNAFREIAERLRKQGLANTRAESETPVSETSSIEPVEPTPPVK 529

Query: 314  -YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
               +  +      +   P+P  ++S   + Y N + L +T Y+S+DDI  AGG+  L   
Sbjct: 530  TRSEPIQPDETALLANLPVPVIIHSGDAIHYVNQALLDITGYESLDDIRSAGGVDVLF-N 588

Query: 373  PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
             +  D    + ++L  +D +     A L+ I W    +L ++ +P   A+          
Sbjct: 589  SESDDGETRQSMVLRHADGSEEPVDAHLNAIAWRGGRALMLSLMPVTAADLPAPAELPAA 648

Query: 433  IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
                       K+ +E  V +L +IL+  +DG+ +I+ EG I S N + S LFGY  ++ 
Sbjct: 649  -------NDEEKQALEAHVEELKTILDTATDGVVLIDPEGRIRSMNHSASALFGYERDEA 701

Query: 493  LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPF 550
              K F++     +      YL  +    +   L   +  +G   +   + L + I KLP 
Sbjct: 702  EGKFFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPH 761

Query: 551  SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
            +  +   + DI++WK+ + +L++A+K AE+ S+ K++FLAR+SHEIRTPL AIIGFSE++
Sbjct: 762  TRGFCAVLRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELM 821

Query: 611  KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
             +++FGP+GN RY +Y   I+RSGN VL +VNDLLDISKIE+G +++ FE VSL++A+ E
Sbjct: 822  ADEKFGPIGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGE 881

Query: 671  AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
            AI+L+Q  AN +R++IR+SF +N+P I+AD RS+KQ+ALN+LSNA+ FT  GGQ+I+ST+
Sbjct: 882  AIALMQPQANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTALGGQVIVSTS 941

Query: 731  HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ--------IPNSQQIRGEGTGLGLPLAK 782
            +  N +V++RVRDTG+GM+  E+E+A+KPF Q          +++  R EGTGLGLPL K
Sbjct: 942  YELNGDVVMRVRDTGIGMSKSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTK 1001

Query: 783  AMVDANMGKFYIFSTPAKGTLIEIIFP 809
            AMV+AN  +F I S P +GT++EI+FP
Sbjct: 1002 AMVEANRAQFAIDSNPGQGTVVEIVFP 1028



 Score = 40.4 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 48/578 (8%), Positives = 124/578 (21%), Gaps = 117/578 (20%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +DA G +   S      +   A       L D+        +  +   ++  +       
Sbjct: 141 VDAVGKVVAASPRFA-LLDISAS-----TLEDLIVEAGDATDRIVKRRIRTGSHSVPGAI 194

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +   L++   +   P                         P      L++      
Sbjct: 195 ARLTDTPALHLLCIVGDAPAQ-------------FQTAAEAVPLPDNAEAVLEEILPEQG 241

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           +     +     +       +          +  +       D         L      +
Sbjct: 242 DAPAQQAQKTHAEQPRPKTFAFDHDAPPARFIWKVGP-----DGTFSEISPDLAAVVGPN 296

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
             +       ++         G++     E   +        L    +      P  +  
Sbjct: 297 SADIVGRRFSDVANVFGFDTDGSIAALLLERDTWSG----KRLLWPVEGTRLRVPVELAA 352

Query: 329 CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG-GLSTLLDAPKLSDNNAIKPVMLY 387
            P    VYS    F     F ++   ++  D E  G  L+  +   +       +   + 
Sbjct: 353 LP----VYSRDREFLGFRGFGIVRPAEAEADPEEIGLALAGGIPQNRKPRKEPAETARMV 408

Query: 388 RSDRTCI------------------AASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
             D                               + + +  +++     ++     +   
Sbjct: 409 GEDDVLALSEEVANDDQPAAVLPKPPLDITPTPGRRDSDKVISLLNSCAQEKVAADQAKF 468

Query: 430 QNGIEPEDVDT----RINKRKMEIEVMQLC------------------------------ 455
               E          +  +        +L                               
Sbjct: 469 LKEKERATRPEGGLTKTERNAFREIAERLRKQGLANTRAESETPVSETSSIEPVEPTPPV 528

Query: 456 ------------SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
                       ++L      + I + +  I   N+A+  + GY             L+ 
Sbjct: 529 KTRSEPIQPDETALLANLPVPVIIHSGD-AIHYVNQALLDITGYES-----------LDD 576

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
              +     L    S D       +   +   E+ +   +            L++  ++ 
Sbjct: 577 IRSAGGVDVLFNSESDDGETRQSMVLRHADGSEEPVDAHLNAIAWRGGRALMLSLMPVTA 636

Query: 564 W-KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
                  +L  A    ++      +       E++T L
Sbjct: 637 ADLPAPAELPAANDEEKQALEAHVE-------ELKTIL 667



 Score = 38.1 bits (87), Expect = 6.0,   Method: Composition-based stats.
 Identities = 35/299 (11%), Positives = 81/299 (27%), Gaps = 19/299 (6%)

Query: 8   SNPEDILTSNCKGNTQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNY 67
           + PE  LT   +   ++++++    G    +++ E P  ++                T  
Sbjct: 476 TRPEGGLTKTERNAFREIAERLRKQGLANTRAESETPVSETSSIEPVEPTP---PVKTRS 532

Query: 68  LDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI 127
              +           V     I +   +  +++ L    G  +   I      V  + + 
Sbjct: 533 EPIQPDETALLANLPVPVI--IHSGDAIHYVNQALLDITGYESLDDI-RSAGGVDVLFNS 589

Query: 128 DPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187
           + ++      + + +      L   +G+    P+D     I  R           +    
Sbjct: 590 ESDDG-----ETRQS----MVLRHADGSEE--PVDAHLNAIAWRGGRALMLSLMPV--TA 636

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247
                P  L    D++   L    +   ++     D      P   +R  N  +S    Y
Sbjct: 637 ADLPAPAELPAANDEEKQALEAHVEELKTILDTATDGVVLIDPEGRIRSMNHSASALFGY 696

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
              +   K          + +  +     + N            +   +K  F  L   
Sbjct: 697 ERDEAEGKFFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMT 755


>gi|163843854|ref|YP_001628258.1| PAS domain-containing protein [Brucella suis ATCC 23445]
 gi|223635611|sp|B0CI82|PDHS_BRUSI RecName: Full=Cell-division control histidine kinase pdhS
 gi|163674577|gb|ABY38688.1| PAS domain S-box [Brucella suis ATCC 23445]
          Length = 1035

 Score =  628 bits (1620), Expect = e-177,   Method: Composition-based stats.
 Identities = 272/807 (33%), Positives = 424/807 (52%), Gaps = 56/807 (6%)

Query: 43   NPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEEL 102
                D+  Q       ++    T        F FD      RF W +   G   EIS +L
Sbjct: 238  PEQGDAPAQQAQKTHAEQPRPKT--------FAFDHDAPPARFIWKVGPDGTFSEISPDL 289

Query: 103  PKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPID 162
               +G  +  ++G R  DV+++     +  I  LL  ++TW GK  LWP+EGT L VP++
Sbjct: 290  AAVVGPNSADIVGRRFSDVANVFGFYTDGSIAALLLERDTWSGKRLLWPVEGTRLRVPVE 349

Query: 163  LAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEK--E 220
            LAALP+YSR+REF GFRGFGIV     + DP  +G  L        + +K  +   +   
Sbjct: 350  LAALPVYSRDREFLGFRGFGIVRPAEAEADPEEIGLALAGGIPQNRKPRKEPAETARMVG 409

Query: 221  KYDIFSQQS--------------------PPPHLRMKNKVSSLTEYYAHKDDV------L 254
            + D+ +                       P P  R  +KV SL    A +         L
Sbjct: 410  EDDVLALSEEVANDDQPAAVLPKPPLDITPTPGRRDSDKVISLLNSCAQEKVAADQAKFL 469

Query: 255  KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA- 313
            K ++         +  E+  F  I      +       ++ +  S         P+    
Sbjct: 470  KEKERATRPEGGLTKTERNAFREIAERLRKQGLANTRAESETPVSETSSIEPVEPTPPVK 529

Query: 314  -YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
               +  +      +   P+P  ++S   + Y N + L +T Y+S+DDI  AGG+  L   
Sbjct: 530  TRSEPIQPDETALLANLPVPVIIHSGDAIHYVNQALLDITGYESLDDIRSAGGVDVLF-N 588

Query: 373  PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
             +  D    + ++L  +D +       L+ I W    +L ++ +P   A+          
Sbjct: 589  SESDDGETRQSMVLRHADGSEEPVDTHLNAIAWRGGRALMLSLMPVTAADLPAPAELPAA 648

Query: 433  IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
                       K+ +E  V +L +IL+  +DG+ +I+ EG I S N + S LFGY  ++ 
Sbjct: 649  -------NDEEKQALEAHVEELKTILDTATDGVVLIDPEGRIRSMNHSASALFGYERDEA 701

Query: 493  LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPF 550
              K F++     +      YL  +    +   L   +  +G   +   + L + I KLP 
Sbjct: 702  EGKFFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPH 761

Query: 551  SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
            +  +   + DI++WK+ + +L++A+K AE+ S+ K++FLAR+SHEIRTPL AIIGFSE++
Sbjct: 762  TRGFCAVLRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELM 821

Query: 611  KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
             +++FGP+GN RY +Y   I+RSGN VL +VNDLLDISKIE+G +++ FE VSL++A+ E
Sbjct: 822  ADEKFGPIGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGE 881

Query: 671  AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
            AI+L+Q  AN +R++IR+SF +N+P I+AD RS+KQ+ALN+LSNA+ FT  GGQ+I+ST+
Sbjct: 882  AIALMQPQANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTS 941

Query: 731  HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ--------IPNSQQIRGEGTGLGLPLAK 782
            +  N +V++RVRDTG+GM+  E+E+A+KPF Q          +++  R EGTGLGLPL K
Sbjct: 942  YELNGDVVMRVRDTGIGMSKSEVEQALKPFRQINALEGRKAESAKDWRNEGTGLGLPLTK 1001

Query: 783  AMVDANMGKFYIFSTPAKGTLIEIIFP 809
            AMV+AN  +F I S P +GT++EI+FP
Sbjct: 1002 AMVEANRAQFAIDSNPGQGTVVEIVFP 1028



 Score = 38.9 bits (89), Expect = 3.5,   Method: Composition-based stats.
 Identities = 34/299 (11%), Positives = 80/299 (26%), Gaps = 19/299 (6%)

Query: 8   SNPEDILTSNCKGNTQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNY 67
           + PE  LT   +   ++++++    G    +++ E P  ++                T  
Sbjct: 476 TRPEGGLTKTERNAFREIAERLRKQGLANTRAESETPVSETSSIEPVEPTP---PVKTRS 532

Query: 68  LDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI 127
              +           V     I +   +  +++ L    G  +   I      V  + + 
Sbjct: 533 EPIQPDETALLANLPVPVI--IHSGDAIHYVNQALLDITGYESLDDI-RSAGGVDVLFNS 589

Query: 128 DPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187
           + ++      + + +      L   +G+   V   L A+                +    
Sbjct: 590 ESDDG-----ETRQS----MVLRHADGSEEPVDTHLNAIAWRG--GRALMLSLMPV--TA 636

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247
                P  L    D++   L    +   ++     D      P   +R  N  +S    Y
Sbjct: 637 ADLPAPAELPAANDEEKQALEAHVEELKTILDTATDGVVLIDPEGRIRSMNHSASALFGY 696

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
              +   K          + +  +     + N            +   +K  F  L   
Sbjct: 697 ERDEAEGKFFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMT 755


>gi|294852917|ref|ZP_06793590.1| cell-division control histidine kinase pdhS [Brucella sp. NVSL
            07-0026]
 gi|294821506|gb|EFG38505.1| cell-division control histidine kinase pdhS [Brucella sp. NVSL
            07-0026]
          Length = 1035

 Score =  628 bits (1619), Expect = e-177,   Method: Composition-based stats.
 Identities = 273/806 (33%), Positives = 425/806 (52%), Gaps = 56/806 (6%)

Query: 43   NPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEEL 102
                D+  Q       ++    T        F FD      RF W +   G   EIS +L
Sbjct: 238  PEQGDAPAQQAQKTHAEQPRPKT--------FAFDHDAPPARFIWKVGPDGTFSEISPDL 289

Query: 103  PKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPID 162
               +G  +  ++G R  DV+++   D +  I  LL  ++TW GK  LWP+EGT L VP++
Sbjct: 290  AAVVGPNSADIVGRRFSDVANVFGFDTDGSIAALLLERDTWSGKRLLWPVEGTRLRVPVE 349

Query: 163  LAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEK--E 220
            LAALP+YSR+REF GFRGFGIV     + DP  +G  L        + +K  +   +   
Sbjct: 350  LAALPVYSRDREFLGFRGFGIVRPAEAEADPEEIGLALAGGIPQNRKPRKEPAETARMVG 409

Query: 221  KYDIFSQQS--------------------PPPHLRMKNKVSSLTEYYAHKDDV------L 254
            + D+ +                       P P  R  +KV SL    A +         L
Sbjct: 410  EDDVLALSEEVANDDQPAAVLPKPPLDITPTPGRRDSDKVISLLNSCAQEKVAADQAKFL 469

Query: 255  KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA- 313
            K ++         +  E+  F  I      +       ++ +  S         P+    
Sbjct: 470  KEKERATRPEGGLTKTERNAFREIAERLRKQGLANTRAESETPVSETSSIEPVEPTPPVK 529

Query: 314  -YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
               +  +      +   P+P  ++S   + Y N + L +T Y+S+DDI  AGG+  L   
Sbjct: 530  TRSEPIQPDETALLANLPVPVIIHSGDAIHYVNQALLDITGYESLDDIRSAGGVDVLF-N 588

Query: 373  PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
             +  D    + ++L  +D +     A L+ I W    +L ++ +P   A+          
Sbjct: 589  SESDDGETRQSMVLRHADGSEEPVDAHLNAIAWRGGRALMLSLMPVTAADLPAPAELPAA 648

Query: 433  IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
                       K+ +E  V +L +IL+  +DG+ +I+ EG I S N + S LFGY  ++ 
Sbjct: 649  -------NDEEKQALEAHVEELKTILDTATDGVVLIDPEGRIRSMNHSASALFGYERDEA 701

Query: 493  LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPF 550
              K F++     +      YL  +    +   L   +  +G   +   + L + I KLP 
Sbjct: 702  EGKFFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPH 761

Query: 551  SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
            +  +   + DI++WK+ + +L++A+K AE+ S+ K++FLAR+SHEIRTPL AIIGFSE++
Sbjct: 762  TRGFCAVLRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELM 821

Query: 611  KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
             +++FGP+GN RY +Y   I+RSGN VL +VNDLLDISKIE+G +++ FE VSL++A+ E
Sbjct: 822  ADEKFGPIGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGE 881

Query: 671  AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
            AI+L+Q  AN +R++IR+SF +N+P I+AD RS+KQ+ALN+LSNA+ FT  GGQ+I+ST+
Sbjct: 882  AIALMQPQANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTS 941

Query: 731  HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ--------IPNSQQIRGEGTGLGLPLAK 782
            +  N +V++RVRDTG+GM+  E+E+A+KPF Q          +++  R EGTGLGLPL K
Sbjct: 942  YELNGDVVMRVRDTGIGMSKSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTK 1001

Query: 783  AMVDANMGKFYIFSTPAKGTLIEIIF 808
            AMV+AN  +F I S P +GT++EI+F
Sbjct: 1002 AMVEANRAQFAIDSNPGQGTVVEIVF 1027



 Score = 40.4 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 48/578 (8%), Positives = 124/578 (21%), Gaps = 117/578 (20%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +DA G +   S      +   A       L D+        +  +   ++  +       
Sbjct: 141 VDAVGKVVAASPRFA-LLDISAS-----TLEDLIVEAGDATDRIVKRRIRTGSHSVPGAI 194

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +   L++   +   P                         P      L++      
Sbjct: 195 ARLTDTPALHLLCIVGDAPAQ-------------FQTAAEAVPLPDNAEAVLEEILPEQG 241

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           +     +     +       +          +  +       D         L      +
Sbjct: 242 DAPAQQAQKTHAEQPRPKTFAFDHDAPPARFIWKVGP-----DGTFSEISPDLAAVVGPN 296

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
             +       ++         G++     E   +        L    +      P  +  
Sbjct: 297 SADIVGRRFSDVANVFGFDTDGSIAALLLERDTWSG----KRLLWPVEGTRLRVPVELAA 352

Query: 329 CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG-GLSTLLDAPKLSDNNAIKPVMLY 387
            P    VYS    F     F ++   ++  D E  G  L+  +   +       +   + 
Sbjct: 353 LP----VYSRDREFLGFRGFGIVRPAEAEADPEEIGLALAGGIPQNRKPRKEPAETARMV 408

Query: 388 RSDRTCI------------------AASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
             D                               + + +  +++     ++     +   
Sbjct: 409 GEDDVLALSEEVANDDQPAAVLPKPPLDITPTPGRRDSDKVISLLNSCAQEKVAADQAKF 468

Query: 430 QNGIEPEDVDT----RINKRKMEIEVMQLC------------------------------ 455
               E          +  +        +L                               
Sbjct: 469 LKEKERATRPEGGLTKTERNAFREIAERLRKQGLANTRAESETPVSETSSIEPVEPTPPV 528

Query: 456 ------------SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
                       ++L      + I + +  I   N+A+  + GY             L+ 
Sbjct: 529 KTRSEPIQPDETALLANLPVPVIIHSGD-AIHYVNQALLDITGYES-----------LDD 576

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
              +     L    S D       +   +   E+ +   +            L++  ++ 
Sbjct: 577 IRSAGGVDVLFNSESDDGETRQSMVLRHADGSEEPVDAHLNAIAWRGGRALMLSLMPVTA 636

Query: 564 W-KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
                  +L  A    ++      +       E++T L
Sbjct: 637 ADLPAPAELPAANDEEKQALEAHVE-------ELKTIL 667



 Score = 38.1 bits (87), Expect = 5.9,   Method: Composition-based stats.
 Identities = 35/299 (11%), Positives = 81/299 (27%), Gaps = 19/299 (6%)

Query: 8   SNPEDILTSNCKGNTQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNY 67
           + PE  LT   +   ++++++    G    +++ E P  ++                T  
Sbjct: 476 TRPEGGLTKTERNAFREIAERLRKQGLANTRAESETPVSETSSIEPVEPTP---PVKTRS 532

Query: 68  LDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI 127
              +           V     I +   +  +++ L    G  +   I      V  + + 
Sbjct: 533 EPIQPDETALLANLPVPVI--IHSGDAIHYVNQALLDITGYESLDDI-RSAGGVDVLFNS 589

Query: 128 DPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187
           + ++      + + +      L   +G+    P+D     I  R           +    
Sbjct: 590 ESDDG-----ETRQS----MVLRHADGSEE--PVDAHLNAIAWRGGRALMLSLMPV--TA 636

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247
                P  L    D++   L    +   ++     D      P   +R  N  +S    Y
Sbjct: 637 ADLPAPAELPAANDEEKQALEAHVEELKTILDTATDGVVLIDPEGRIRSMNHSASALFGY 696

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
              +   K          + +  +     + N            +   +K  F  L   
Sbjct: 697 ERDEAEGKFFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMT 755


>gi|148559609|ref|YP_001259471.1| sensory box histidine kinase [Brucella ovis ATCC 25840]
 gi|223635610|sp|A5VRX4|PDHS_BRUO2 RecName: Full=Cell-division control histidine kinase pdhS
 gi|148370866|gb|ABQ60845.1| sensory box histidine kinase [Brucella ovis ATCC 25840]
          Length = 1035

 Score =  628 bits (1619), Expect = e-177,   Method: Composition-based stats.
 Identities = 274/807 (33%), Positives = 425/807 (52%), Gaps = 56/807 (6%)

Query: 43   NPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEEL 102
                D+  Q       ++    T        F FD      RF W +   G   EIS +L
Sbjct: 238  PEQGDAPAQQAQKTHAEQPRPKT--------FAFDHDAPPARFIWKVGPDGTFSEISPDL 289

Query: 103  PKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPID 162
               +G  +  M+G R  DV+++   D +  I  LL  ++TW GK  LWP+EGT L VP++
Sbjct: 290  AAVVGPNSADMVGRRFSDVANVFGFDTDGSIAALLLERDTWSGKRLLWPVEGTRLRVPVE 349

Query: 163  LAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEK--E 220
            LAALP+YSR+REF GFRGFGIV     + DP  +G  L        + +K  +   +   
Sbjct: 350  LAALPVYSRDREFLGFRGFGIVRPAEAEADPEEIGLALAGGIPQNRKPRKEPAETARMVG 409

Query: 221  KYDIFSQQS--------------------PPPHLRMKNKVSSLTEYYAHKDDV------L 254
            + D+ +                       P P  R  +KV SL    A +         L
Sbjct: 410  EDDVLALSEEVANDDQPAAVLPKPPLDITPTPGRRDSDKVISLLNSCAQEKVAADQAKFL 469

Query: 255  KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA- 313
            K ++         +  E+  F  I      +       ++ +  S         P+    
Sbjct: 470  KEKERATRPEGGLTKTERNAFREIAERLRKQGLANTRAESETPVSETSSIEPVEPTPPVK 529

Query: 314  -YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
               +  +      +   P+P  ++S   + Y N + L +T Y+S+DDI  AGG+  L   
Sbjct: 530  TRSEPIQPDETALLANLPVPVIIHSGDAIHYVNQALLDITGYESLDDIRSAGGVDVLF-N 588

Query: 373  PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
             +  D    + ++L  +D +     A L+ I W    +L ++ +P   A+          
Sbjct: 589  SESDDGETRQSMVLRHADGSEEPVDAHLNAIAWRGGRALMLSLMPVTAADLPAPAELPAA 648

Query: 433  IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
                       K+ +E  V +L +IL+  +DG+ +I+ EG I S N + S LFGY  ++ 
Sbjct: 649  -------NDEEKQALEAHVEELKTILDTATDGVVLIDPEGRIRSMNHSASALFGYERDEA 701

Query: 493  LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPF 550
              K F++     +      YL  +    +   L   +  +G   +   + L + I KLP 
Sbjct: 702  EGKFFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPH 761

Query: 551  SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
            +  +   + DI++WK+ + +L++A+K AE+ S+ K++FLAR+SHEIRTPL AIIGFSE++
Sbjct: 762  TRGFCAVLRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELM 821

Query: 611  KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
             +++FGP+GN RY +Y   I+RSGN VL +VNDLLDISKIE+G +++ FE VSL++A+ E
Sbjct: 822  ADEKFGPIGNDRYRDYLRDINRSGNHVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGE 881

Query: 671  AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
            AI+L+Q  AN +R++IR+SF +N+P I+AD RS+KQ+ALN+LSNA+ FT  G Q+I+ST+
Sbjct: 882  AIALMQPQANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGRQVIVSTS 941

Query: 731  HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ--------IPNSQQIRGEGTGLGLPLAK 782
            +  N +V++RVRDTG+GM+  E+E+A+KPF Q          +++  R EGTGLGLPL K
Sbjct: 942  YELNGDVVMRVRDTGIGMSKSEVEQALKPFRQINALERRKAESAKDWRNEGTGLGLPLTK 1001

Query: 783  AMVDANMGKFYIFSTPAKGTLIEIIFP 809
            AMV+AN  +F I S P +GT++EI+FP
Sbjct: 1002 AMVEANRAQFAIDSNPGQGTVVEIVFP 1028



 Score = 38.1 bits (87), Expect = 6.0,   Method: Composition-based stats.
 Identities = 35/299 (11%), Positives = 81/299 (27%), Gaps = 19/299 (6%)

Query: 8   SNPEDILTSNCKGNTQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNY 67
           + PE  LT   +   ++++++    G    +++ E P  ++                T  
Sbjct: 476 TRPEGGLTKTERNAFREIAERLRKQGLANTRAESETPVSETSSIEPVEPTP---PVKTRS 532

Query: 68  LDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI 127
              +           V     I +   +  +++ L    G  +   I      V  + + 
Sbjct: 533 EPIQPDETALLANLPVPVI--IHSGDAIHYVNQALLDITGYESLDDI-RSAGGVDVLFNS 589

Query: 128 DPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187
           + ++      + + +      L   +G+    P+D     I  R           +    
Sbjct: 590 ESDDG-----ETRQS----MVLRHADGSEE--PVDAHLNAIAWRGGRALMLSLMPV--TA 636

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247
                P  L    D++   L    +   ++     D      P   +R  N  +S    Y
Sbjct: 637 ADLPAPAELPAANDEEKQALEAHVEELKTILDTATDGVVLIDPEGRIRSMNHSASALFGY 696

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
              +   K          + +  +     + N            +   +K  F  L   
Sbjct: 697 ERDEAEGKFFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMT 755


>gi|161619546|ref|YP_001593433.1| PAS domain-containing protein [Brucella canis ATCC 23365]
 gi|254704851|ref|ZP_05166679.1| PAS domain-containing protein [Brucella suis bv. 3 str. 686]
 gi|260565909|ref|ZP_05836379.1| sensory box histidine kinase [Brucella suis bv. 4 str. 40]
 gi|261755546|ref|ZP_05999255.1| PAS/PAC sensor signal transduction histidine kinase [Brucella suis
            bv. 3 str. 686]
 gi|223635609|sp|A9M715|PDHS_BRUC2 RecName: Full=Cell-division control histidine kinase pdhS
 gi|161336357|gb|ABX62662.1| PAS domain S-box [Brucella canis ATCC 23365]
 gi|260155427|gb|EEW90507.1| sensory box histidine kinase [Brucella suis bv. 4 str. 40]
 gi|261745299|gb|EEY33225.1| PAS/PAC sensor signal transduction histidine kinase [Brucella suis
            bv. 3 str. 686]
          Length = 1035

 Score =  627 bits (1618), Expect = e-177,   Method: Composition-based stats.
 Identities = 273/807 (33%), Positives = 425/807 (52%), Gaps = 56/807 (6%)

Query: 43   NPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEEL 102
                D+  Q       ++    T        F FD      RF W +   G   EIS +L
Sbjct: 238  PEQGDAPAQQAQKTHAEQPRPKT--------FAFDHDAPPARFIWKVGPDGTFSEISPDL 289

Query: 103  PKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPID 162
               +G  +  ++G R  DV+++     +  I  LL  ++TW GK  LWP+EGT L VP++
Sbjct: 290  AAVVGPNSADIVGRRFSDVANVFGFYTDGSIAALLLERDTWSGKRLLWPVEGTRLRVPVE 349

Query: 163  LAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEK--E 220
            LAALP+YSR+REF GFRGFGIV     + DP  +G  L        + +K  +   +   
Sbjct: 350  LAALPVYSRDREFLGFRGFGIVRPAEAEADPEEIGLALAGGIPQNRKPRKEPAETARMVG 409

Query: 221  KYDIFSQQS--------------------PPPHLRMKNKVSSLTEYYAHKDDV------L 254
            + D+ +                       P P  R  +KV SL    A +         L
Sbjct: 410  EDDVLALSEEVANDDQPAAVLPKPPLDITPTPGRRDSDKVISLLNSCAQEKVAADQAKFL 469

Query: 255  KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA- 313
            K ++         +  E+  F  I      +       ++ +  S         P+    
Sbjct: 470  KEKERATRPEGGLTKTERNAFREIAERLRKQGLANTRAESETPVSETSSIEPVEPTPPVK 529

Query: 314  -YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
               +  +      +   P+P  ++S   + Y N + L +T Y+S+DDI  AGG+  L   
Sbjct: 530  TRSEPIQPDETALLANLPVPVIIHSGDAIHYVNQALLDITGYESLDDIRSAGGVDVLF-N 588

Query: 373  PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
             +  D    + ++L  +D +     A L+ I W    +L ++ +P   A+          
Sbjct: 589  SESDDGETRQSMVLRHADGSEEPVDAHLNAIAWRGGRALMLSLMPVTAADLPAPAELPAA 648

Query: 433  IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
                       K+ +E  V +L +IL+  +DG+ +I+ EG I S N + S LFGY  ++ 
Sbjct: 649  -------NDEEKQALEAHVEELKTILDTATDGVVLIDPEGRIRSMNHSASALFGYERDEA 701

Query: 493  LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPF 550
              K F++     +      YL  +    +   L   +  +G   +   + L + I KLP 
Sbjct: 702  EGKFFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMTIGKLPH 761

Query: 551  SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
            +  +   + DI++WK+ + +L++A+K AE+ S+ K++FLAR+SHEIRTPL AIIGFSE++
Sbjct: 762  TRGFCAVLRDITQWKRTEEELTNARKEAERASNQKTEFLARISHEIRTPLNAIIGFSELM 821

Query: 611  KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
             +++FGP+GN RY +Y   I+RSGN VL +VNDLLDISKIE+G +++ FE VSL++A+ E
Sbjct: 822  ADEKFGPIGNDRYRDYLRDINRSGNYVLALVNDLLDISKIEAGALDMQFEAVSLNDAIGE 881

Query: 671  AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
            AI+L+Q  AN +R++IR+SF +N+P I+AD RS+KQ+ALN+LSNA+ FT  GGQ+I+ST+
Sbjct: 882  AIALMQPQANRERVIIRSSFQSNLPDIVADSRSIKQVALNLLSNAVRFTAPGGQVIVSTS 941

Query: 731  HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ--------IPNSQQIRGEGTGLGLPLAK 782
            +  N +V++RVRDTG+GM+  E+E+A+KPF Q          +++  R EGTGLGLPL K
Sbjct: 942  YELNGDVVMRVRDTGIGMSKSEVEQALKPFRQINALEGRKAESAKDWRNEGTGLGLPLTK 1001

Query: 783  AMVDANMGKFYIFSTPAKGTLIEIIFP 809
            AMV+AN  +F I S P +GT++EI+FP
Sbjct: 1002 AMVEANRAQFAIDSNPGQGTVVEIVFP 1028



 Score = 38.5 bits (88), Expect = 5.0,   Method: Composition-based stats.
 Identities = 35/299 (11%), Positives = 81/299 (27%), Gaps = 19/299 (6%)

Query: 8   SNPEDILTSNCKGNTQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNY 67
           + PE  LT   +   ++++++    G    +++ E P  ++                T  
Sbjct: 476 TRPEGGLTKTERNAFREIAERLRKQGLANTRAESETPVSETSSIEPVEPTP---PVKTRS 532

Query: 68  LDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI 127
              +           V     I +   +  +++ L    G  +   I      V  + + 
Sbjct: 533 EPIQPDETALLANLPVPVI--IHSGDAIHYVNQALLDITGYESLDDI-RSAGGVDVLFNS 589

Query: 128 DPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187
           + ++      + + +      L   +G+    P+D     I  R           +    
Sbjct: 590 ESDDG-----ETRQS----MVLRHADGSEE--PVDAHLNAIAWRGGRALMLSLMPV--TA 636

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247
                P  L    D++   L    +   ++     D      P   +R  N  +S    Y
Sbjct: 637 ADLPAPAELPAANDEEKQALEAHVEELKTILDTATDGVVLIDPEGRIRSMNHSASALFGY 696

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
              +   K          + +  +     + N            +   +K  F  L   
Sbjct: 697 ERDEAEGKFFSMLFAIESQRAAMDYLHGLSGNGVLSVLNDGREVIGREAKGGFIPLFMT 755


>gi|15964474|ref|NP_384827.1| putative sensor histidine kinase protein [Sinorhizobium meliloti
            1021]
 gi|307308417|ref|ZP_07588121.1| PAS/PAC sensor signal transduction histidine kinase [Sinorhizobium
            meliloti BL225C]
 gi|15073651|emb|CAC45293.1| Two-component histidine kinase, stationary-phase regulator of cell
            surface physiology and symbiosis [Sinorhizobium meliloti
            1021]
 gi|306901020|gb|EFN31628.1| PAS/PAC sensor signal transduction histidine kinase [Sinorhizobium
            meliloti BL225C]
          Length = 1134

 Score =  620 bits (1598), Expect = e-175,   Method: Composition-based stats.
 Identities = 299/837 (35%), Positives = 421/837 (50%), Gaps = 76/837 (9%)

Query: 41   KENPCHDSFEQSNFTDQNQESVSNTNYLDSEN-----------TFVFDPIPRTVRFTWNI 89
             +       E         E+         E             F F    R VRF W I
Sbjct: 299  AQGELAPQDEAEAADLAEPETPLEAEPASGEPAADADRGGETADFAFAAGGRAVRFVWKI 358

Query: 90   DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
            DA G   EISEE    +G  A  +IG+   D++D   +DP++ I +LL R++TW GKT  
Sbjct: 359  DAEGRFSEISEEFASAVGPKAADVIGVSFTDLADRYDLDPDDKINELLHRRDTWSGKTIF 418

Query: 150  WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
            WP++GTNL VP+DLAALP YSR+REF GFRGFGIV +     D +A G  LD+       
Sbjct: 419  WPVQGTNLKVPVDLAALPTYSRSREFDGFRGFGIVRIADAVPDAKAAGLALDRPAPAQIA 478

Query: 210  IKKGHSSVEKEKY----------------------------DIFSQQSPP------PHLR 235
                  S E                                D F  + P       P  +
Sbjct: 479  QASSDMSAEGAGAPQAEAGSKTGPDAGSGKDAAEAAPDVSEDPFRGEQPALRVVETPGRQ 538

Query: 236  MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLN-------------Q 282
              +KV  L E        L   +          L E      +                 
Sbjct: 539  ASDKVIDLDERRPAGAGALTRGEQAAFREIARQLGEHFAPDQLPQEGKAEGRHEADTPPI 598

Query: 283  YTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE-------GENLTPETVDKCPIPFFV 335
                         ++    +          A   E       G  ++ E +D+ P+   V
Sbjct: 599  TPADTEESRQTEEAEAPGGWHDATPAGETPAAAMEPGLTARNGAAMSSEILDRLPVALLV 658

Query: 336  YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL-DAPKLSDNNAIKPVMLYRSDRTCI 394
            +    L +AN  FL LT Y++++  E  GGL  L     +         + L R D   I
Sbjct: 659  HHGDALLHANAEFLRLTGYENLEAFEQEGGLEALFALGNEAGAAKPNGTMTLVRKDGRLI 718

Query: 395  AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
               A LH+I+W  +++L +   P   +    +     G             ++ +E+ +L
Sbjct: 719  PVGAHLHSIRWEGKSALMLALTPAGASEAEKQAREDEGAA--------EASRLRMEIDEL 770

Query: 455  CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
             SILE  +DG+ ++ R+G I + NR+ S LF Y   D+  KPF       +   +  YL 
Sbjct: 771  RSILETATDGVVVLGRDGDIRTMNRSASALFDYDEADMRGKPFAALFAHESQKAVIDYLQ 830

Query: 515  EILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572
             +    +   L   +  +G       + L + I +L  S+ Y   + DI++WK+ + +L 
Sbjct: 831  GLSGHGVASVLNDGREVIGREAAGGFIPLFMTIGRLSSSNGYCAVIRDITQWKRTEEELR 890

Query: 573  HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
            +AK+ AE  ++HK++FLARVSHEIRTPL AIIGFS+++ ++ FGP+G+PRYIEYA  I R
Sbjct: 891  NAKRAAETANAHKTEFLARVSHEIRTPLNAIIGFSDMMASEHFGPIGHPRYIEYAGDIGR 950

Query: 633  SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
            SG  VLDIVNDLLDISKIE+G+M+L F  V L+EAVSEA+SLVQ  AN +R++IRTS + 
Sbjct: 951  SGRHVLDIVNDLLDISKIEAGEMDLDFGAVDLNEAVSEAVSLVQPQANSQRVIIRTSLSG 1010

Query: 693  NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752
            ++P ++AD RS+KQIALNIL+NAI FTPSGGQI++ST++ +N  VILR+RDTG+GMT  E
Sbjct: 1011 SVPEVVADDRSIKQIALNILANAIRFTPSGGQIVVSTSYEANGSVILRIRDTGIGMTRNE 1070

Query: 753  LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            L++AMKPF Q+    + RG+GTGLGLPL KAM +AN  +F I S P +GTL+EI FP
Sbjct: 1071 LDQAMKPFRQVTTGGRKRGDGTGLGLPLTKAMAEANRAQFAITSAPNEGTLVEISFP 1127


>gi|307318980|ref|ZP_07598411.1| PAS/PAC sensor signal transduction histidine kinase [Sinorhizobium
            meliloti AK83]
 gi|306895394|gb|EFN26149.1| PAS/PAC sensor signal transduction histidine kinase [Sinorhizobium
            meliloti AK83]
          Length = 1133

 Score =  619 bits (1596), Expect = e-175,   Method: Composition-based stats.
 Identities = 297/829 (35%), Positives = 421/829 (50%), Gaps = 69/829 (8%)

Query: 42   ENPCHDSFEQSNFTDQNQESVSNTNYLDSENT-----FVFDPIPRTVRFTWNIDAHGYLK 96
            ++    +      T    E  S     D++       F F    R VRF W IDA G   
Sbjct: 306  QDEAEAADLAEPETPLEAEPASGEPAADADRGGETADFAFAAGGRAVRFVWKIDAEGRFS 365

Query: 97   EISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTN 156
            EISEE    +G  A  +IG+   D++D   +DP++ I +LL R++TW GKT  WP++GTN
Sbjct: 366  EISEEFASAVGPKAADVIGVSFTDLADRYDLDPDDKINELLHRRDTWSGKTIFWPVQGTN 425

Query: 157  LYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSS 216
            L VP+DLAALP YSR+REF GFRGFGIV +     D +A G  LD+             S
Sbjct: 426  LKVPVDLAALPTYSRSREFDGFRGFGIVRIADAVPDAKAAGLALDRPAPAQTAQASSDMS 485

Query: 217  VEKEKYDIFSQ-------------QSPPP--------------------HLRMKNKVSSL 243
             E                          P                      +  +KV  L
Sbjct: 486  SEGAGAPQAEAGSKTGPAGSGKDAAEAAPDVSEDPFRGEQPALRVVETAGRQASDKVIDL 545

Query: 244  TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQ-------------YTKKQYFG 290
             E        L   +          L E      +                         
Sbjct: 546  DERRPAGAGALTRGEQAAFREIARQLGEHFAPDQLPQEGKAEGRHEADTSPSTPADTEES 605

Query: 291  TLQNNSKESFEYLSHRNHPSLSAYFDE-------GENLTPETVDKCPIPFFVYSHGNLFY 343
                 ++    +          A   E       G  ++ E +D+ P+   V+    L +
Sbjct: 606  RQTEKAEAPGGWHDATPAGETPAAAMEPGLTARNGAAMSSEILDRLPVALLVHHGDALLH 665

Query: 344  ANPSFLLLTKYKSVDDIEIAGGLSTLL-DAPKLSDNNAIKPVMLYRSDRTCIAASARLHT 402
            AN  FL LT Y++++  E  GGL  L     +         + L R D   I   A LH+
Sbjct: 666  ANAEFLRLTGYENLEAFEQEGGLEALFALGNEAGAAKPNGTMTLVRKDGRLIPVGAHLHS 725

Query: 403  IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
            I+W  +++L +   P   +    +     G             ++ +E+ +L SILE  +
Sbjct: 726  IRWEGKSALMLALTPAGASEAEKQAREDEGAA--------EASRLRMEIDELRSILETAT 777

Query: 463  DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522
            DG+ ++ R+G I + NR+ S LF Y   D+  KPF       +   +  YL  +    + 
Sbjct: 778  DGVVVLGRDGDIRTMNRSASALFDYDESDMRGKPFAALFAHESQKAVIDYLQGLSGHGVA 837

Query: 523  QTLE--KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
              L   +  +G       + L + I +L  S+ Y   + DI++WK+ + +L +AK+ AE 
Sbjct: 838  SVLNDGREVIGREAAGGFIPLFMTIGRLSSSNGYCAVIRDITQWKRTEEELRNAKRAAET 897

Query: 581  ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
             ++HK++FLARVSHEIRTPL AIIGFS+++ ++ FGP+G+PRYIEYA  I RSG  VLDI
Sbjct: 898  ANAHKTEFLARVSHEIRTPLNAIIGFSDMMASEHFGPIGHPRYIEYAGDIGRSGRHVLDI 957

Query: 641  VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILAD 700
            VNDLLDISKIE+G+M+L F  V L+EAVSEA+SLVQ  AN +R++IRTS + ++P ++AD
Sbjct: 958  VNDLLDISKIEAGEMDLDFGAVDLNEAVSEAVSLVQPQANSQRVIIRTSLSGSVPEVVAD 1017

Query: 701  LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760
             RS+KQIALNIL+NAI FTPSGGQI++ST++ +N  VILR+RDTG+GMT  EL++AMKPF
Sbjct: 1018 DRSIKQIALNILANAIRFTPSGGQIVVSTSYEANGSVILRIRDTGIGMTRNELDQAMKPF 1077

Query: 761  GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             Q+    + RG+GTGLGLPL KAM +AN  +F I S P +GTL+EI FP
Sbjct: 1078 RQVTTGGRKRGDGTGLGLPLTKAMAEANRAQFAITSAPNEGTLVEISFP 1126


>gi|227820916|ref|YP_002824886.1| predicted sensor histidine kinase protein with ATP-binding domain
            [Sinorhizobium fredii NGR234]
 gi|227339915|gb|ACP24133.1| predicted sensor histidine kinase protein with ATP-binding domain
            [Sinorhizobium fredii NGR234]
          Length = 1117

 Score =  615 bits (1586), Expect = e-174,   Method: Composition-based stats.
 Identities = 291/784 (37%), Positives = 421/784 (53%), Gaps = 54/784 (6%)

Query: 73   TFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH 132
             F F P  R VRF W IDA G   EISEE    +G  +  ++G+   +++    +DP+N 
Sbjct: 334  GFTFTPGSRAVRFVWKIDAEGCFSEISEEFAAAVGPKSADVVGLTFSELAARYDLDPDNK 393

Query: 133  IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192
            +  LL R++TW GKT LWPIEGT+L VP+DLAALP YSR+REF GFRGFGIV +     D
Sbjct: 394  VNALLHRRDTWSGKTILWPIEGTSLKVPVDLAALPTYSRSREFDGFRGFGIVRIADAVED 453

Query: 193  PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFS-----------QQSPP---------- 231
             +A G  L    +  +E     +  +    +  S           +  PP          
Sbjct: 454  EKASGLSLGHIDTPRNEGMPAEAPSDDAPREPASLASDGTDTPRSEAEPPSAEDPFAGER 513

Query: 232  --------PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ----------- 272
                    P     +KV  L E+       L   +          L  Q           
Sbjct: 514  PALRIVDIPARPPSDKVIDLDEHRPGSSGTLTRGEQAAFREIARQLGAQFSETTPPAAAD 573

Query: 273  ----EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
                      +  +        + ++ +    E                G  ++ E +D+
Sbjct: 574  EDGKRPVDAASQAEAAGDMESLSSEDATAARQEETMPGAGDEAPPAPRGGVGMSSEILDR 633

Query: 329  CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD-APKLSDNNAIKPVMLY 387
             P+   ++    L +ANP FL LT Y+ ++  + AGGL  L     +  ++     + L 
Sbjct: 634  LPVALLIHHGDELLHANPEFLRLTGYRKLEAFQQAGGLEALFAYGAESGEHEPDGTMTLV 693

Query: 388  RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
            R++      SA LH+IQW   ++L +   P         +   +            + ++
Sbjct: 694  RANGPLAPVSAHLHSIQWEGRSALMLALAPAAARAADMPSAGADASAG-------GEARL 746

Query: 448  EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
             +E+ +L SILE  +DG+ ++ ++G I + N + S LF Y  +++  KPF       +  
Sbjct: 747  RMEIDELRSILETATDGVVVLGQDGDIRTMNGSASALFNYDEDEMRGKPFAALFAHESQK 806

Query: 508  VMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
             +  YL  +    +   L   +  +G       L L + I +L  S+ Y   + DI++WK
Sbjct: 807  AVIDYLQGLSGHGVASVLNDGREAIGREAGGGFLPLFMTIGRLSSSNGYCAVIRDITQWK 866

Query: 566  QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
            + + +L +AK+ AE  ++HK++FLARVSHEIRTPL AIIGFS+++ ++ FGP+GNPRYIE
Sbjct: 867  RTEEELRNAKRSAETANAHKTEFLARVSHEIRTPLNAIIGFSDMMASEHFGPIGNPRYIE 926

Query: 626  YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
            YA  I RSG  VLDIVNDLLDISKIE+G+M L F  V L+EAVSEA+SLVQ  AN +R++
Sbjct: 927  YAGDIGRSGRHVLDIVNDLLDISKIEAGEMELDFSAVDLNEAVSEAVSLVQPQANSQRVI 986

Query: 686  IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
            IRTS + ++P ++AD RS+KQIALNIL+NAI FTPSGGQI++ST++ +N  VILR+RDTG
Sbjct: 987  IRTSLSGSVPEVVADGRSIKQIALNILANAIRFTPSGGQIVVSTSYETNGSVILRIRDTG 1046

Query: 746  VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
            +GMT  EL++AMKPF Q+    + RGEGTGLGLPL KAM +AN  +F I S P +GTL+E
Sbjct: 1047 IGMTRNELDQAMKPFRQVTTGGRKRGEGTGLGLPLTKAMAEANRAQFGISSAPNEGTLVE 1106

Query: 806  IIFP 809
            I FP
Sbjct: 1107 ISFP 1110



 Score = 44.2 bits (103), Expect = 0.099,   Method: Composition-based stats.
 Identities = 38/428 (8%), Positives = 92/428 (21%), Gaps = 48/428 (11%)

Query: 32  NGFETEKSKKENPCHDSF---EQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWN 88
           +G +T +S+ E P  +     E+      +  +          +  V D           
Sbjct: 491 DGTDTPRSEAEPPSAEDPFAGERPALRIVDIPARPP-------SDKVIDLDEH------R 537

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
             + G L    +   +       + +G +  + +     D +                 +
Sbjct: 538 PGSSGTLTRGEQAAFR----EIARQLGAQFSETTPPAAADEDGKR---------PVDAAS 584

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                G    +  + A               G G               + LD+    L 
Sbjct: 585 QAEAAGDMESLSSEDATAARQEET-----MPGAGDEAPPAPRGGVGMSSEILDRLPVALL 639

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
                       ++   +        +    + +L  Y A   +        L+ +    
Sbjct: 640 IHHGDELLHANPEFLRLTGYRKLEAFQQAGGLEALFAYGAESGEHEPDGTMTLVRANGPL 699

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
            P     H+I     +                            A      +     ++ 
Sbjct: 700 APVSAHLHSIQWEGRSALMLALAPAAARAADMPSAGADASAGGEARLRMEIDELRSILET 759

Query: 329 CPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
                 V    G++   N S   L  Y   +             A    ++       L 
Sbjct: 760 ATDGVVVLGQDGDIRTMNGSASALFNYDEDE------MRGKPFAALFAHESQKAVIDYLQ 813

Query: 388 RSDRTCIAA---SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
                 +A+     R    +      L +       ++          +  +    +  +
Sbjct: 814 GLSGHGVASVLNDGREAIGREAGGGFLPLFMTIGRLSSSNG----YCAVIRDITQWKRTE 869

Query: 445 RKMEIEVM 452
            ++     
Sbjct: 870 EELRNAKR 877


>gi|150395544|ref|YP_001326011.1| PAS/PAC sensor signal transduction histidine kinase [Sinorhizobium
            medicae WSM419]
 gi|150027059|gb|ABR59176.1| PAS/PAC sensor signal transduction histidine kinase [Sinorhizobium
            medicae WSM419]
          Length = 1138

 Score =  607 bits (1566), Expect = e-171,   Method: Composition-based stats.
 Identities = 299/814 (36%), Positives = 429/814 (52%), Gaps = 68/814 (8%)

Query: 54   FTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM 113
                + E+    +       FVF    R VRF W IDA G+  EISEE    +G  A  +
Sbjct: 328  TEKASSENAVEADQRREAADFVFAAGGRAVRFVWKIDAEGHFSEISEEFASAVGPKAADV 387

Query: 114  IGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNR 173
            IG+   +++    +DP+N I +LL R++TW GKT  WP++GTNL VP+DLAALP YSR+R
Sbjct: 388  IGVTFTELAGRYGLDPDNRINELLHRRDTWSGKTIFWPVQGTNLKVPVDLAALPTYSRSR 447

Query: 174  EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS---------------------------- 205
            EF GFRGFGIV V     D +A G  LD+  +                            
Sbjct: 448  EFDGFRGFGIVRVADAVPDAKAAGLSLDRAPAQKSSAAPEGADGPNAGSPPETGPADRRH 507

Query: 206  -HLHEIKKGHSSVEKEKYDIFSQQSPP------PHLRMKNKVSSLTEYYAHKDDVLKTEK 258
                  K           D F  + P       P     +K+  L +        L   +
Sbjct: 508  AEAGNGKDAERVAPDPSEDPFRGEQPALRAVDTPDRPPSDKIIDLDQRRPAGAGTLTRGE 567

Query: 259  YPL--------------------LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE 298
                                     +E  S PE E F T       + ++    +   ++
Sbjct: 568  QAAFREIAKQLGEHFSVHDPLPPSQTEAESRPEAETFPTSKPANAEENEHTEATEAAGEQ 627

Query: 299  SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVD 358
              E  +    P   A    G  ++ ET+D+ P+   V+    L + N  FL LT Y  +D
Sbjct: 628  KSEAPAAAMEPGPPART--GAGISSETLDRLPVALLVHHGDELLHGNAEFLRLTGYDDLD 685

Query: 359  DIEIAGGLSTLL-DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
                 GGL  L     +         + L R D   I   A LH+I+W  +++L +   P
Sbjct: 686  AFAHEGGLEALFALGNEAGAARPDGTMTLVRKDGRLIPVGAHLHSIRWEGKSALMLALTP 745

Query: 418  FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
                        +   +  D ++     ++ +E+ +L SILE  +DG+ ++ +EG I + 
Sbjct: 746  A--------GASEAERQARDAESAAEASRLRMEIDELRSILETATDGVVVLGQEGDIRTM 797

Query: 478  NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKE 535
            NR+ S LF Y   ++  KPF       +   +  YL  +    +   L   +  +G    
Sbjct: 798  NRSASALFDYDEAEMRGKPFATLFAHESQKAVIDYLHGLAGHGVASVLNDGREVIGREAA 857

Query: 536  EKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
               + L + I +L  S+ Y   + DI++WK+ + +L +AK+ AE  ++HK++FLARVSHE
Sbjct: 858  GGFIPLFMTIGRLSSSNGYCAVIRDITQWKRTEEELRNAKRAAETANAHKTEFLARVSHE 917

Query: 596  IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
            IRTPL AIIGFS+++ ++ FGP+G+PRYIEYA  I RSG  VLDIVNDLLDISKIE+G+M
Sbjct: 918  IRTPLNAIIGFSDMMASEHFGPIGHPRYIEYAGDIGRSGRHVLDIVNDLLDISKIEAGEM 977

Query: 656  NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715
            +L F  V L+EAVSEA+SLVQ  AN +R++IRTS + ++P ++AD RS+KQIALNIL+NA
Sbjct: 978  DLDFGAVDLNEAVSEAVSLVQPQANSQRVIIRTSLSGSVPEVVADDRSIKQIALNILANA 1037

Query: 716  IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
            I FTPSGGQI++ST++ +N  VILR+RDTG+GMT  EL++AMKPF Q+    + RG+GTG
Sbjct: 1038 IRFTPSGGQIVVSTSYEANGSVILRIRDTGIGMTRNELDQAMKPFRQVTTGGRKRGDGTG 1097

Query: 776  LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            LGLPL KAM +AN  +F I S P +GTL+E+ FP
Sbjct: 1098 LGLPLTKAMTEANRAQFAITSAPNEGTLVEVSFP 1131


>gi|315122143|ref|YP_004062632.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus
           Liberibacter solanacearum CLso-ZC1]
 gi|313495545|gb|ADR52144.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus
           Liberibacter solanacearum CLso-ZC1]
          Length = 806

 Score =  607 bits (1566), Expect = e-171,   Method: Composition-based stats.
 Identities = 513/813 (63%), Positives = 619/813 (76%), Gaps = 18/813 (2%)

Query: 1   MSTDSIISNPEDILTSNCKGNTQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQE 60
           MS DSI  NP +  T+NCK  ++DLS K+  N      S K NPC+ +  + +       
Sbjct: 1   MSIDSITLNPPNSPTNNCKNTSKDLSLKETINNLGIRDSHKGNPCNQNHLEQSSPTGQNH 60

Query: 61  SV----SNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGM 116
           +     S +  L+ EN+F+FD  PRTVRFTW IDA G+L  +SEEL +TIG YA KMIGM
Sbjct: 61  APRTQISCSRNLEPENSFLFDSSPRTVRFTWKIDAQGHLNAVSEELSQTIGTYALKMIGM 120

Query: 117 RLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFS 176
            LCD++ IL ID  +H+ DLL +QNTWY KTT WPIEGT+L+VPIDLAALPIYSR+REF 
Sbjct: 121 HLCDINHILQIDSKDHLFDLLTQQNTWYSKTTFWPIEGTDLHVPIDLAALPIYSRDREFV 180

Query: 177 GFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM 236
           GF+GFGI+ VN+  NDP+ LG  L +KFS  HEIKK HS ++KE       Q+ P HL +
Sbjct: 181 GFKGFGIIRVNQTKNDPKKLGTTLGEKFSQSHEIKKVHSFIKKENSPSLPYQTIPAHLDI 240

Query: 237 KNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINL-NQYTKKQYFGTLQNN 295
           K++ S  + Y+    D        L T++++   ++++FHTINL     K  +      +
Sbjct: 241 KDRGSFPSGYFPKDKDD------NLATNKKNYFSKRDNFHTINLNQYIEKYPHPKESFED 294

Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYK 355
           S +        NHPSLS YF EGENLTPE VDK PI  FV S   L YA+PSFLLL  YK
Sbjct: 295 SFQI-------NHPSLSTYFGEGENLTPEIVDKHPISLFVCSKERLLYASPSFLLLAGYK 347

Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
           SV+DIE  GG+S LLDA KLS+ N    + L+RSD T IA SA LHTIQWNRENSLAMTF
Sbjct: 348 SVEDIEKVGGVSMLLDAQKLSNGNTHGSITLHRSDGTNIAVSAHLHTIQWNRENSLAMTF 407

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
           +PFEK N+  +++ QN I+    +TR +  KMEIE+MQLCSILE+TSDGIAI+NR+G IL
Sbjct: 408 VPFEKNNKLSDHISQNEIKSGYNNTRTDANKMEIEIMQLCSILESTSDGIAIVNRDGTIL 467

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
           STNRA+  LF YP +DI+ KPF +F   +   +MNH + EI S+DL +TLEK  +G T+E
Sbjct: 468 STNRAIGTLFDYPAQDIIGKPFKIFFTHDNQIIMNHCMAEISSIDLGKTLEKTAVGCTRE 527

Query: 536 EKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
            KL+SLRI +KKLPFS+CY L +HDISEWKQEKN+L HAKK+AEKE+SHK+DFLARVSHE
Sbjct: 528 GKLISLRITMKKLPFSACYCLILHDISEWKQEKNELYHAKKMAEKENSHKNDFLARVSHE 587

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           IRTPLTAIIGFSEVIKNQRFGP+G+PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM
Sbjct: 588 IRTPLTAIIGFSEVIKNQRFGPVGSPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 647

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715
           N HFE VSL+E +SEAISL++LYANEKRIL+RTSF+N+IP I ADLRS+KQIALNILSNA
Sbjct: 648 NFHFESVSLNETISEAISLMELYANEKRILVRTSFSNDIPPIFADLRSIKQIALNILSNA 707

Query: 716 IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           IHFTPSGGQI+IST +T N+EV+LRV+DTG+GMT+YELEKAMKPFGQIPNSQQ+RGEGTG
Sbjct: 708 IHFTPSGGQIVISTAYTRNKEVVLRVKDTGIGMTDYELEKAMKPFGQIPNSQQVRGEGTG 767

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           LGLPL KAMVDANMGKF +FSTP+KGTLIEIIF
Sbjct: 768 LGLPLTKAMVDANMGKFSVFSTPSKGTLIEIIF 800


>gi|222084929|ref|YP_002543458.1| two-component sensor histidine kinase protein [Agrobacterium
            radiobacter K84]
 gi|221722377|gb|ACM25533.1| two-component sensor histidine kinase protein [Agrobacterium
            radiobacter K84]
          Length = 1190

 Score =  604 bits (1558), Expect = e-170,   Method: Composition-based stats.
 Identities = 296/838 (35%), Positives = 449/838 (53%), Gaps = 73/838 (8%)

Query: 43   NPCHDSFEQSNFTDQNQESVSNTNYLDSENT-FVFDPIPRTVRFTWNIDAHGYLKEISEE 101
                +S  +         +  +    D +   F F    R  RF W IDA G   E+S E
Sbjct: 348  PAVVESPVEHEEISPEPAAPEHDAVADGQPGEFTFKRNGRATRFVWKIDAEGRFSEVSRE 407

Query: 102  LPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPI 161
              + +G +A K+ G    DV+   ++DP+  I +LL R++TW G+T  WP+E T+L VP+
Sbjct: 408  FAEAVGPHAAKVTGTAFTDVAAHFNLDPDGKIAELLARRDTWSGRTIYWPVENTSLIVPV 467

Query: 162  DLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL---DKKFSHLHEIKKGHSSVE 218
            DLAALP Y+R+R+F GFRGFG+V ++    DP  LG  L   + + +   +  +  ++ E
Sbjct: 468  DLAALPTYTRSRDFDGFRGFGVVRLSDAIEDPMKLGLTLGAEEDQSARTPDATEEPAATE 527

Query: 219  KEKYDIF------------------------SQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254
             +  D                          + +  P +        + T      D ++
Sbjct: 528  TDATDPAIAEETLQSAAEEHIAEEENTIPETADEPAPANEEPPALTIAETPNRRETDKII 587

Query: 255  KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL----------- 303
            +  +         SL EQ  F  I        +   T +  ++   +             
Sbjct: 588  QLHERRSAMPGGLSLSEQAAFREIARQLEPFGKRTETPEEGTQTEEDADTSPKPNAADEI 647

Query: 304  ---SHRNHPSLSAYFDEGEN-------------------------LTPETVDKCPIPFFV 335
               +  + P   A  D   +                         L+ E VD+ P+   +
Sbjct: 648  LSGATEDQPVEEAAPDAELSKPEEHLDPLGVLNTAIPSRVKMRNGLSDEIVDQLPLAILI 707

Query: 336  YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN-NAIKPVMLYRSDRTCI 394
            ++   L + NP FL LT Y+S+ D++  GGL  LL    L         +M+ R+D T +
Sbjct: 708  HAGDRLIHGNPEFLRLTGYESLADLDHVGGLDALLQRHDLEGKTEQPGTMMVVRADDTLV 767

Query: 395  AASARLHTIQWNRENSLAMTFIPFEKAN-QFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
              +ARL +I+W    +L +  +P EK++   P         PE +  ++   K+++E+ +
Sbjct: 768  PVTARLQSIRWEDGTALMLALMPLEKSDVSTPAEPVPEEARPERMIEKLA--KLQVEIEE 825

Query: 454  LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
            L S LE  +DG+ II ++G I S NR+ S LF +  ++   KPF +     +   +  YL
Sbjct: 826  LQSTLETATDGVVIIGQDGDIRSMNRSASALFNFDDQETRGKPFVMLFAHESQKAVLDYL 885

Query: 514  TEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571
            + +    +   L   +  +G       + L + + +L  S+ Y   + DI++WK+ + +L
Sbjct: 886  SGLSGHGVASVLNDGREVMGREASGGFVPLFMTMGRLNSSNGYCAVIRDITQWKRTEEEL 945

Query: 572  SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
             +AK+ AE  ++HK+DFLARVSHEIRTPL AIIGFS+++  +RFGP+G+ RY+EYA  I 
Sbjct: 946  RNAKRAAETANAHKTDFLARVSHEIRTPLNAIIGFSDMMAGERFGPIGHSRYVEYATDIG 1005

Query: 632  RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
            RSG  VLDIVNDLLDISKIE+G+M+L F  V L+EA++EA+SLVQ  AN +R++IRT+ +
Sbjct: 1006 RSGRHVLDIVNDLLDISKIEAGEMDLEFASVGLNEAIAEAVSLVQPQANSQRVIIRTALS 1065

Query: 692  NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751
              +P ++ADLRS+KQIALNILSNAI FTPSGGQI++ST++  N  V++R+RDTGVGMT  
Sbjct: 1066 QAVPNVVADLRSIKQIALNILSNAIRFTPSGGQIVVSTSYEGNGSVVMRIRDTGVGMTRS 1125

Query: 752  ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            ELE+AMKPF Q+  + + RG+GTGLGLPL KAMVDAN   F I S+P +GTL+E+ FP
Sbjct: 1126 ELEQAMKPFRQVSTNSRKRGDGTGLGLPLTKAMVDANRATFAINSSPNEGTLVEVTFP 1183



 Score = 39.2 bits (90), Expect = 3.1,   Method: Composition-based stats.
 Identities = 54/494 (10%), Positives = 119/494 (24%), Gaps = 37/494 (7%)

Query: 75  VFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG 134
            F      V F+  +D    +   +       G      I     D            I 
Sbjct: 20  RFARGEAMVMFSAGMD---RVLWANGAGANLFGYD----IIYDFLDQGPKAGDVSFRQIE 72

Query: 135 DLLKRQNTWYG-KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193
              +        +T L  +        ++ A   I  +  E        I+  + V   P
Sbjct: 73  ATARGLGAVGDQRTFLIRMASGFQRAVVNAAVEIIRVQAGE------EAILFSSPVSVKP 126

Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253
            A  +   +      +     + + ++   I +           +    LT       + 
Sbjct: 127 MAAAESAKRMIDGFDDPDTHMAVIGRDGDVIAASTGFEALGVTPHTAKMLTTMAGALPER 186

Query: 254 LKTEKYPL----LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
           L     P     L +    L E    H + + +        T   ++      ++     
Sbjct: 187 LIKRPIPTGRGYLPAAVGKLSEIPALHLLFVVETVLGHLDPTESPDAPAPPAAITKVEPE 246

Query: 310 SLSAYFDEGENLTPETV--DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
           +  A  +    +   T   D  P+        ++  A      +      D         
Sbjct: 247 AEEARNELEAAVVEPTFAPDTAPVANAASPSADVLDAVAGIEEVEDTPEDDA----AIRE 302

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ--WNRENSLAMTFIPFEKANQFP 425
            +      +  +  +   +  +    I A+A +  +    +   + A+   P E     P
Sbjct: 303 AISVQSDAASEDLGQLATMDGASEEQIDAAAYVDELTDEADDMVAPAVVESPVEHEEISP 362

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
           E          D        K      +           +  I+ EG     +R  ++  
Sbjct: 363 EPAAPEHDAVADGQPGEFTFKRNGRATRF----------VWKIDAEGRFSEVSREFAEAV 412

Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
           G     +    FT           +  + E+L+     +   I         ++ + +  
Sbjct: 413 GPHAAKVTGTAFTDVAAHFNLDP-DGKIAELLARRDTWSGRTIYWPVENTSLIVPVDLAA 471

Query: 546 KKLPFSSCYSLTMH 559
                 S       
Sbjct: 472 LPTYTRSRDFDGFR 485


>gi|75675205|ref|YP_317626.1| Signal transduction histidine kinase [Nitrobacter winogradskyi
            Nb-255]
 gi|74420075|gb|ABA04274.1| PAS/PAC sensor signal transduction histidine kinase [Nitrobacter
            winogradskyi Nb-255]
          Length = 1005

 Score =  552 bits (1423), Expect = e-155,   Method: Composition-based stats.
 Identities = 215/815 (26%), Positives = 379/815 (46%), Gaps = 51/815 (6%)

Query: 25   LSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESV-SNTNYLDSENTFVFDPIPRTV 83
            L K   D   +  +   E    +S  Q+  T    ++V S     +  ++         +
Sbjct: 216  LKKNVPDRSPDQAQPLAEPE-PESPLQNAETVLPAQAVRSPPEPGNRPSSAPPARRRHPL 274

Query: 84   RFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTW 143
            RF W +DA G     S+E  +TIG       G    ++SD+  +DP   +   ++ +NTW
Sbjct: 275  RFMWRMDAEGRFSIGSDEFTRTIGMRTATGFGRLWSEISDVFGLDPEGRLARAVQTRNTW 334

Query: 144  YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             G T LWP++G++  + ++L+ LPIY R R F G+RGFG+    R      A  +R +  
Sbjct: 335  SGVTLLWPVDGSDARLRVELSGLPIYDRTRNFVGYRGFGVCRD-REGLARLAASRRSEFL 393

Query: 204  FSH---LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
            FS       +   +S+ +K    +     P   +     V             L   +  
Sbjct: 394  FSETSHPAPVDSANSADDKPSEPLQQPTEPDTTVETPKNVLPFRPPVDLNPPPLTPVENH 453

Query: 261  LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
                    L  + +       +             S  + E     + P   A       
Sbjct: 454  AFNELARQLSARLEGE-PEAARPEDNAEPPVAAGASAITREQADEPSSPEQPAPRRTTVA 512

Query: 321  LTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
               + +D  P    ++  G   YAN +FL    Y+S++ ++ AGGL  LL   ++ + + 
Sbjct: 513  RDSQILDLIPSGVMIHRAGRALYANAAFLAQVGYQSLETLQEAGGLDALLVEARMVEADP 572

Query: 381  IK--------------PVMLYRSDRT---CIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
            ++              PV +  +  +       +ARL  + W+ E + A+        ++
Sbjct: 573  VEAALPDAVGTPPTGSPVTVSVTPPSGAPQQPLAARLFAVSWDGEPAHALICGGASAPSR 632

Query: 424  FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
                                         +L +I++  ++G+ + +  G I + N +   
Sbjct: 633  VGH----------------------ATAEELATIVDGAAEGLLMFDDGGNITACNHSAET 670

Query: 484  LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE-KITLGSTKEEKLLSLR 542
            LFG P + + ++         +   +  YL  +   D  Q    +  +G   E+ L+ L 
Sbjct: 671  LFGLPGDTLTQRNLVDLFAPESQDAVRDYLKSLTDDDANQLDHGREVVGRMGEDGLIPLS 730

Query: 543  IIIKKLPFSSC-YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
            + + +   +   +     D+S+ K+ + +LS A++ AE+ ++ K+D LAR+SHEIRTPL 
Sbjct: 731  MTMGRTQAAGPNFFAAFRDLSQSKKTETELSQARRQAERAANAKADVLARISHEIRTPLN 790

Query: 602  AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
            +IIGF+EV+ +++FG LGN RY+EY   I  SG  ++  ++DLLD+S+IE+GK++L F  
Sbjct: 791  SIIGFAEVMIDEKFGSLGNERYVEYMKDIRASGERIISFIDDLLDLSRIETGKLDLAFVN 850

Query: 662  VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
             +L++ V + ++++Q  AN +RI+IRTS A+ +P I+AD ++++QI LN++ N+IH   +
Sbjct: 851  QNLNDIVEQCVAVMQPQANRERIIIRTSLAHTLPAIVADAQALRQITLNLIGNSIHLANA 910

Query: 722  GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
            GGQ+I+ST      +V LRVRD+G  ++  EL  A +PF + P       +  G+ L L 
Sbjct: 911  GGQVIVSTAVNDFGDVALRVRDSGHSLSEDELAAATEPF-RTPPPSDQASKSAGVSLSLT 969

Query: 782  KAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
            KA+V+AN  +F+I + P  GTLIE++F     S P
Sbjct: 970  KALVEANRAQFHIKTGPHSGTLIEVVF--AQASAP 1002



 Score = 41.2 bits (95), Expect = 0.70,   Method: Composition-based stats.
 Identities = 21/216 (9%), Positives = 48/216 (22%), Gaps = 23/216 (10%)

Query: 318 GENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
              L        P   +      + +ANP  + +        +              L D
Sbjct: 17  DPRLAVHAASAMPAWLWSLDGARILWANPVGVSIVGATDASALASRTF--------NLDD 68

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
               +   L     +  A               L                +     EP  
Sbjct: 69  PRRRQVAQLASRLPSSGAVRLERMRGYAGLGRLLTCACSRL-DFPGVGSAILVRAAEPAG 127

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV------ED 491
               +        V +L  ++      +A  + +G  ++ +     LFG         + 
Sbjct: 128 RGITL--------VERLQQLVAGVDAPVAAFSHDGRFVAASIKGRSLFGIGSLSEGGLDS 179

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
           +  +       + +  +    L  + S      +  
Sbjct: 180 LRDQALREGRAETSIGLWRLVLQRVGSGGDIGLVAF 215


>gi|85716111|ref|ZP_01047087.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A]
 gi|85697110|gb|EAQ34992.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A]
          Length = 978

 Score =  551 bits (1421), Expect = e-154,   Method: Composition-based stats.
 Identities = 215/795 (27%), Positives = 365/795 (45%), Gaps = 50/795 (6%)

Query: 38  KSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDP--IPRTVRFTWNIDAHGYL 95
            +    P  +    ++ T     +V      D        P      +RF W +DA G  
Sbjct: 215 PAGLTEPEAELPLPNSATVSPMRAVGPRPEPDHRP-LRDSPLRRRHPLRFMWRMDAEGRF 273

Query: 96  KEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGT 155
              S+E  + IG     + G    ++++I   DP   +   ++ + TW G + LWP +G+
Sbjct: 274 SFGSDEFTRIIGMRTTSVFGRLWSEITEIFGFDPEGRVAKAVETRETWSGISLLWPADGS 333

Query: 156 NLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH---LHEIKK 212
           +  + ++L+ LP+Y R R F G+RGFG+    R      A  +R D  FS          
Sbjct: 334 DTGLRVELSGLPVYDRARNFVGYRGFGVCRD-REGLARLAANRRNDFLFSETSHPAPANP 392

Query: 213 GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ 272
             S+  +    +     P   +     V                   PL   E ++  E 
Sbjct: 393 ATSADARPSEPLQQPAEPDTTVETPKNVLPFRPPV-------DLNPPPLTPVENNAFNEL 445

Query: 273 EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV-DKCPI 331
               +  L                    E        S +    +    +   + D  P 
Sbjct: 446 ARQLSARLEGEADDAAAPGTDAEQPGVSEPPDASREQSATEPTPQATLASDNLICDLLPS 505

Query: 332 PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP----VMLY 387
              +Y  G + YANP+FL    Y S   ++ AGGL  LL    + D     P    V + 
Sbjct: 506 GVMIYRAGRVLYANPAFLAQVGYGSFQALQEAGGLDALLVQADMPDAVNTPPTGSHVTVS 565

Query: 388 RSDRT---CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
            +  +       +ARL  + W+ E + A+        ++                     
Sbjct: 566 ATPPSGAPQQPITARLFEVSWDGEPANALICGGTSAPSRIGH------------------ 607

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
                   +L +I++  ++GI + +  G I + NR+   LFG+  +++ +          
Sbjct: 608 ----ANAEELATIVDIAAEGILMFDDGGRITACNRSAETLFGHSGDNLTQHNLVDLFAPE 663

Query: 505 TPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSC-YSLTMHDI 561
           +   +  YL  ++  D    L+  +  LG  +E+ L+ L +I+ +       +     D+
Sbjct: 664 SQGAVRDYLKSLMHDDDASLLDHGREVLGRAREDGLIPLSMIMGRTQAEGPNFFAVFRDL 723

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           S+ K+ + +LS A++ AE+ ++ K+D LAR+SHEIR PL +IIGF+EV+ +++FG LGN 
Sbjct: 724 SQSKKAETELSQARRQAERAANAKADVLARISHEIRAPLNSIIGFAEVMIDEKFGSLGNE 783

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
           RY+EY   I  SG  ++  ++DLLD+S+IE+GK++L F   +L+E V + ++++Q  AN 
Sbjct: 784 RYVEYMKDIRASGERIIAFIDDLLDLSRIETGKLDLAFVNQNLNEIVEQCVAVMQPQANR 843

Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
           +RI+IRTS A+ +P ++AD ++++QI LN++ N+IH   +GGQ+I+ST  T   +V LRV
Sbjct: 844 ERIIIRTSLAHTLPPVVADAQALRQITLNLIGNSIHLANAGGQVIVSTAITDFGDVALRV 903

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
           RDTG G++  EL  A +PF + P       +  G+ L L KA+V+AN  +F+I + P  G
Sbjct: 904 RDTGQGLSENELAAATEPF-RTPAPSDQASKSAGVSLSLTKALVEANRAQFHIKTGPHSG 962

Query: 802 TLIEIIFPLYDTSHP 816
           TLIE++F    T  P
Sbjct: 963 TLIEVVF--AQTDAP 975


>gi|92116807|ref|YP_576536.1| PAS/PAC sensor signal transduction histidine kinase [Nitrobacter
            hamburgensis X14]
 gi|91799701|gb|ABE62076.1| PAS/PAC sensor signal transduction histidine kinase [Nitrobacter
            hamburgensis X14]
          Length = 1031

 Score =  538 bits (1386), Expect = e-150,   Method: Composition-based stats.
 Identities = 209/819 (25%), Positives = 350/819 (42%), Gaps = 86/819 (10%)

Query: 52   SNFTDQNQESVSNTNYLDSENTFVFDP--IPRTVRFTWNIDAHGYLKEISEELPKTIGNY 109
                      V   +  D   +    P      +RF W +DA G     S+E  + IG  
Sbjct: 228  QAVGSAGHPVVEGLSEPDDTPSPDHSPQMRRHPLRFMWRMDAEGRFSLGSDEFTRVIGTR 287

Query: 110  AFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIY 169
                 G    +++++  +DP+  +   +  ++TW G T LWP++G+   +P++L+ LPI+
Sbjct: 288  TAAGFGRLWSEITEVFGLDPDGRVAKAVATRDTWSGITLLWPVDGSGARLPVELSGLPIF 347

Query: 170  SRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKY----DIF 225
               R F+G+RGFG+    R      A  +R +  FS         +S   +      D  
Sbjct: 348  DLARNFAGYRGFGVCRD-REGLARIAAHRRHEFLFSETSHPLPASTSTSPDAALAAPDSL 406

Query: 226  SQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFH---TINLNQ 282
                P   +     V         K   L   +          L  + +           
Sbjct: 407  QPAEPDTVVETPKNVLPFRSPTDLKPPSLTPVENNAFNELARQLSARLESEPDTAAPDAV 466

Query: 283  YTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE------------------ 324
              +                          S+  +                          
Sbjct: 467  AEQPVAPEPPPPPEPPPQPPDVTGPQADGSSLSEPAPQAGSAGDSLDHDDFGSNRSKIMN 526

Query: 325  -------------------------TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDD 359
                                      +D  P    +Y    + Y NP+FL    Y  +  
Sbjct: 527  VIDSNIILERDAGGKPLHTFPHPALVLDLLPTGVMIYRLDRVLYVNPAFLAQVGYDGLLA 586

Query: 360  IEIAGGLSTLLDAPKLSDNNAI----KPVMLYRSDRT---CIAASARLHTIQWNRENSLA 412
            +E AGGL  LL    +   ++      PV +  +  +       +A L  I W+ E + A
Sbjct: 587  LEQAGGLDALLVESGMPAADSTPATGSPVTISATPPSGPPQQPIAAHLFVIAWDGEPAHA 646

Query: 413  MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG 472
            +        +                              +L +IL+ T++GI + +  G
Sbjct: 647  LICAGASAPSPVGH----------------------ATAEELGAILDTTAEGILMFDDGG 684

Query: 473  IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITL 530
             I + NR+   LFG+  + + +          +   +  YL  I+   +   L+  +  L
Sbjct: 685  RITACNRSAEALFGHSGDSLTQFNLADLFAPESEGAVRDYLNGIVGNGVASLLDHGREVL 744

Query: 531  GSTKEEKLLSLRIIIKKLPFSSC-YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
            G  +E  L+ L + + +       +     D+S+ K+ + +LS A++ A++ ++ K+D L
Sbjct: 745  GRVREGGLIPLSMTMGRTQADGPNFFAVFRDLSQAKKIETELSQARRQADRAANAKADVL 804

Query: 590  ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
            AR+SHEIRTPL AIIGF+EV+ +++FG LGN RY+EY   I  SG  ++  ++DLLD+S+
Sbjct: 805  ARISHEIRTPLNAIIGFAEVMTDEKFGALGNERYVEYMKDIRASGERIIAFIDDLLDLSR 864

Query: 650  IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709
            IE+GK++L F   +L+E V + ++++Q  AN +RI+IRTS A+ +P I+AD  +++QIAL
Sbjct: 865  IETGKLDLAFVNQNLNELVEQCVAVMQPQANRERIIIRTSLAHTLPPIVADAHALRQIAL 924

Query: 710  NILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
            N++ N+IH   +GGQ+I+ST      +V LRVRDTG G+   EL  A +PF + P     
Sbjct: 925  NLIGNSIHLANAGGQVIVSTALNDFGDVALRVRDTGHGLNENELAAATEPF-RTPAPSDQ 983

Query: 770  RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
              E  G+ L L KA+V+AN  +F I + P  GTLIE++F
Sbjct: 984  ASESAGVSLSLTKALVEANRAQFNIRTGPHSGTLIEVVF 1022



 Score = 46.6 bits (109), Expect = 0.018,   Method: Composition-based stats.
 Identities = 19/173 (10%), Positives = 43/173 (24%), Gaps = 16/173 (9%)

Query: 317 EGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
               L        P   +      + +ANP+ + +        +          D     
Sbjct: 12  ADPRLAVHAASALPAWLWSLDGARILWANPAGVSVFGAVHAPALASQN-----FDPADPH 66

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
                +         T      RL  ++        +      + N    +        E
Sbjct: 67  RRQVAQIAGRLPPTGT-----VRLERLRGFGAPLGRLIICACARLNFSDGSSGILITATE 121

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
                +        V +L  +++     IA+   +G+++    A   L G+  
Sbjct: 122 PTGRAMPL------VERLQRLMDGVDTPIAVFTLDGLLVGAGDAARPLLGFRS 168


>gi|192292979|ref|YP_001993584.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas
            palustris TIE-1]
 gi|192286728|gb|ACF03109.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas
            palustris TIE-1]
          Length = 1191

 Score =  530 bits (1365), Expect = e-148,   Method: Composition-based stats.
 Identities = 223/781 (28%), Positives = 369/781 (47%), Gaps = 27/781 (3%)

Query: 44   PCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELP 103
            P       +      +++ ++             P    +RF W ID  G L   S+E  
Sbjct: 415  PALVEQSAAPEPAAPEQAATDAAPAVETAPEPPAPRRHPLRFVWQIDLAGRLAIASDEFL 474

Query: 104  KTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDL 163
            + IG +    +G R  +V+D L +DP   +   L  ++TW G T  WP +G  L +PI++
Sbjct: 475  RLIGPHTAANLGERWAEVADRLGLDPQGLVAAALATRHTWSGITLQWPADGAALRLPIEM 534

Query: 164  AALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYD 223
            + LP+  +   F+G+RGFG+       +   AL +    +      +    +        
Sbjct: 535  SGLPVQDQGGAFAGYRGFGVCRDLAALDYLAALRRHGPNEPLRPQPLSADRAPNSPASD- 593

Query: 224  IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY 283
                 +  P L   +      +               L   E S+  E        L   
Sbjct: 594  --QAAALDPLLNPLDTPVDTPKNVLPFRAANDARAPSLTPGENSAFHELAQQLAARLASE 651

Query: 284  TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD--------EGENLTPETVDKCPIPFFV 335
            T          + + + E  +       +   D                 +D  P+   +
Sbjct: 652  TPPTADAPSIADDEVAPEQDAATTDTPEAPRADWLAPTPASGASARDRLLLDLMPVGVLI 711

Query: 336  YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN----NAIKPVMLYRSDR 391
            Y    L YANP+FL    + SV  +E AGGL  L     + D+        P+ +  +  
Sbjct: 712  YRLDRLLYANPAFLARMGFASVAALEDAGGLDALYVDSGVGDSSSSSETGTPITITAAQG 771

Query: 392  T-CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450
                   ARL TI W+ + +LA+   P       PE         ED    +     E  
Sbjct: 772  GDAAPTEARLFTIAWDGDQALALICSPAPAPTAVPELPFAPTTAIEDAPAVVGAANAE-- 829

Query: 451  VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
              +L +IL+ T++G+ + +  G I + NR+   LFGY  + +++          + + + 
Sbjct: 830  --ELGAILDTTAEGVLMFDEAGQISAANRSAEALFGYDGDALVQHNLIELFAPESRTAVL 887

Query: 511  HYLTEILSLDLRQTLEK--ITLGSTKEEKLLSLRIIIKKLP-FSSCYSLTMHDISEWKQE 567
             YL  I S   +  L+     LG  +E  L  L + I +       +     D+S+ ++ 
Sbjct: 888  DYLDSIKSGRAQSVLDHGLEALGQVREGGLFPLSMTIGRTRTDGPNFFAVFRDLSQLQRT 947

Query: 568  KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
            + +LS AK++AE+ +  K+D LAR+SHEIR PL AIIGF+EV+  +RFGPLGN RY++Y 
Sbjct: 948  ETELSQAKRLAERATGAKADVLARLSHEIRAPLNAIIGFAEVMIEERFGPLGNERYVDYM 1007

Query: 628  NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
              I  SG  V+ IV+DLLD+S+IE+GK++L F  ++L+E V ++++++Q  AN +RI+IR
Sbjct: 1008 KDIRASGERVIGIVDDLLDLSRIETGKLDLAFASINLNELVEQSVAVMQPRANRERIIIR 1067

Query: 688  TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747
            TS A+++P ++AD ++++QI +N++S +IH   + GQ+I+ST  +   EV+LRVRDTG  
Sbjct: 1068 TSLAHSLPTVVADAQALRQIIMNLISTSIHLANAAGQVIVSTALSDAGEVVLRVRDTGSR 1127

Query: 748  MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
            + + EL  A++PF + P+ +       G+ L L KA+V+AN   F+I S P  GTLIE++
Sbjct: 1128 LNDDELAAALQPF-RTPSDRTEAA---GVSLSLTKALVEANRATFHIKSAPQSGTLIEVV 1183

Query: 808  F 808
            F
Sbjct: 1184 F 1184



 Score = 41.2 bits (95), Expect = 0.72,   Method: Composition-based stats.
 Identities = 19/172 (11%), Positives = 44/172 (25%), Gaps = 16/172 (9%)

Query: 317 EGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
           +   L        P   +      + +ANP    L    +  ++                
Sbjct: 12  DDPRLAVHATRTLPAWLWSTDGSRVLWANPVAARLFDAANATELAGRN-----FRPADPH 66

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
                +       +        RL  ++       A+      K      +        E
Sbjct: 67  RRQVAQLAAKLPPNGAT-----RLERLRGFGAPLGALVTCACTKLGFADGSAGILIAAAE 121

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
            +   +        + +L  ++E     IA    +G+ + ++ A   L G+ 
Sbjct: 122 SIGRPMPL------IDRLRGLVEGVDTPIAAFASDGLFVGSSAAARTLLGFR 167


>gi|27382507|ref|NP_774036.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
            USDA 110]
 gi|27355679|dbj|BAC52661.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
            USDA 110]
          Length = 1171

 Score =  528 bits (1361), Expect = e-147,   Method: Composition-based stats.
 Identities = 226/844 (26%), Positives = 376/844 (44%), Gaps = 79/844 (9%)

Query: 35   ETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLD--SENTFVFDPIPRTVRFTWNIDAH 92
            E+ +   + P       S+     Q +   T  ++  S  T +  P    +RF W +D  
Sbjct: 330  ESAEEPADAPKTPVENHSSAIVSPQAAPITTGMVEPPSGPTEMPAPHQHPLRFLWQMDTE 389

Query: 93   GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPI 152
            G     S E  + +G +     G    +++    +DP   +   L   +TW G T  WP 
Sbjct: 390  GRFVLASCEFIRLMGAHTAAGFGRPWREIAAEFSLDPEGRVAQALASHDTWAGITVNWPA 449

Query: 153  EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212
            +G   ++P++LA LP+Y   R F+GF+GFG+       N   AL +R +       +   
Sbjct: 450  DG-GEHLPVELAGLPVYDHARNFAGFKGFGVCRDLDGLNRLDAL-RRFELLAEPPAQHGL 507

Query: 213  GHSSVEKEKYDIF-------------------------------SQQSPPPHLRMKNKVS 241
                VE +   +                                    P   +     V 
Sbjct: 508  SADIVEPDPEPVAEAPPPPAEPPAPEPEPTPEPELPDPALDANSHPTDPETPVETPPNVV 567

Query: 242  SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301
                    +    +     L   E S+  E     +  L +  +     T +  ++ + E
Sbjct: 568  PFRPPSDTRSPGDQRSPT-LTPIENSAFNELARQLSERLERERETIATATTEPPAESTPE 626

Query: 302  YLSHRNHPSLSAYFDEGEN------LTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYK 355
             L    H       +               +D  P    +Y    L YANP+FL    + 
Sbjct: 627  PLIEAPHAPAEWLTEPAPPARGHSMRDRALLDLLPTGILIYRLDRLLYANPAFLARMGHA 686

Query: 356  SVDDIEIAGGLSTLLDAPKLSDNNAIKP--------VMLYRSDRTCIAASARLHTIQWNR 407
            SV  +E AGGL  L   P +S  ++             L   +       A LHTI W+ 
Sbjct: 687  SVSALENAGGLDALYVEPGVSPASSTSQGGTPVTISATLPNGEEPLPTTEAHLHTIDWDG 746

Query: 408  ENSLAMTF-------IPFEKANQFPENMPQNGIEPEDVDTRINKR-----KMEIEV---- 451
            E++ A+         +    A   P        EP   +  + +      ++E +     
Sbjct: 747  ESAHALVCALPAAAPVVTAPAVAEPVAALSVAAEPVVTEPLVAESFPYASELESQAGDAD 806

Query: 452  -MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
               L +IL+ T++GI + + EG IL  NR+   LFGY  E +L +         +  ++ 
Sbjct: 807  AEDLAAILDTTAEGIVMFDAEGNILVCNRSAEALFGYDGEALLEQNLVSLFAPESQQIVA 866

Query: 511  HYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSC-YSLTMHDISEWKQE 567
             YL  + S D+   L+  +  LG  K+  ++ L +I+ +       +     D+S+ K+ 
Sbjct: 867  DYLESLKSQDISSLLDHGREVLGREKKGGVIPLAMIMGRTRPDGPNFFAVFRDLSQSKKG 926

Query: 568  KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
            +++L+ A+++ +  ++ K+D LAR+SHEIRTPL AIIGF+EV+ ++RFG LGN RY EY 
Sbjct: 927  ESELTQARRLVDGAANAKADMLARISHEIRTPLNAIIGFAEVMISERFGTLGNERYGEYM 986

Query: 628  NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
              I  SG  V+ I++DLL++S+IE+GK++L+F  ++L++ V   + ++Q  AN +RI+IR
Sbjct: 987  KDIRASGERVIAIIDDLLELSRIETGKLDLNFANLNLNDLVEACVVVMQPQANRERIIIR 1046

Query: 688  TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747
            TS  + +P++  D R+++QI +N++SN+I    +GGQ+I+ST      EV LR+RDTG G
Sbjct: 1047 TSLGHALPQVSVDARAMRQITMNLISNSIRLASAGGQVIVSTALNDRGEVALRIRDTGHG 1106

Query: 748  MTNYELEKAMKPFGQ---IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
            ++  E+  AM+PF                  L L L KA+V+AN  +F I S    GTLI
Sbjct: 1107 LSEREVAAAMEPFRTPPPGDAEDNSA-----LSLSLTKALVEANRARFNIKSA-GHGTLI 1160

Query: 805  EIIF 808
            E++F
Sbjct: 1161 EVVF 1164



 Score = 41.2 bits (95), Expect = 0.76,   Method: Composition-based stats.
 Identities = 14/160 (8%), Positives = 35/160 (21%), Gaps = 16/160 (10%)

Query: 329 CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388
            P   +      + +ANP             +                     +      
Sbjct: 33  LPAWLWSVDGARVLWANPVGAKFFGAAHAAVL-----AEKTFGPADSHRRQVARLARQLP 87

Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
           +  T      RL  ++        +      +               E     +      
Sbjct: 88  ASGT-----VRLERLRGFGARLGTLMTCACTRLTFADGGQAVLVTAMEPSVRTMPL---- 138

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
             + +L  ++      +A    +G+ +  + A   L G+ 
Sbjct: 139 --IERLHRLVAGAKMPMAAFAPDGMFVGASEAARALLGFR 176


>gi|90425417|ref|YP_533787.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas
            palustris BisB18]
 gi|90107431|gb|ABD89468.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas
            palustris BisB18]
          Length = 1188

 Score =  525 bits (1353), Expect = e-146,   Method: Composition-based stats.
 Identities = 224/786 (28%), Positives = 363/786 (46%), Gaps = 55/786 (6%)

Query: 75   VFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG 134
               P    +RFTW +DA G    +S+E  + IG       G    +++ +  +DP+ H  
Sbjct: 399  PLPPRRHPLRFTWQLDAEGRFSIVSDEFSRLIGPRTAAGFGRLWHEIAALFGLDPDRHFA 458

Query: 135  DLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR 194
              +  +NT+ G    WP++G +  + ++++ LP+  R+  F G+RGFG+       N   
Sbjct: 459  AAIATRNTFSGIMLNWPVDGPDQRLAVEMSGLPVQDRDGNFRGYRGFGVCRDLAGLN-RL 517

Query: 195  ALGKRLDKKFSHLHEIKKGHSSVE---------------------KEKYDIFSQQSPPPH 233
            A  +R D        +  G + V+                         D+ S   P P 
Sbjct: 518  ADARRNDDDTLPAQPLSAGIAPVDASFAAASVSASEPNGTDLSDQPSPADMSSPTDPEPA 577

Query: 234  LRMKNKVSS-----------LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQ 282
            +     V             LT    +  + L  +    L SE   L  +      +   
Sbjct: 578  VDTPKNVLPFRQTNDPRSPALTPVENNAFNELARQLSARLESEAPDLIAEPAASQPDAPS 637

Query: 283  YTKKQYFGTLQNNSKE--------SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF 334
                    + +  S+E        + E          +             ++  P+   
Sbjct: 638  RPDPTAPDSREPESREPQAAQSETAGEPSEPSAAAPATQPARGEALRDTLLLELLPVGVL 697

Query: 335  VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI---------KPVM 385
            +Y    L YAN +FL  T + SV  ++ AGGL  L        +++              
Sbjct: 698  IYRLDRLLYANRAFLERTGFASVAALDDAGGLDVLYVESGADGSSSNSDDGAPITITAAQ 757

Query: 386  LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
                  +   A  RL TI W+ E +LA+ F                   P   D  +   
Sbjct: 758  RAADQPSSQPAEGRLFTISWDGEPALALIFSETAAETAMAAEAEPFAEAPAI-DPDLPSA 816

Query: 446  KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
                   +L +IL+ T++GI + + EG +   NR+   LFGYP ++++++         +
Sbjct: 817  VGAANAEELGAILDTTAEGIVMFDAEGQLHVCNRSAEALFGYPGDNLVQRNLIELFAPES 876

Query: 506  PSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSC-YSLTMHDIS 562
              V+  Y+  I S      L+  +  LG  +E  L+ L  II +       Y     D+S
Sbjct: 877  QRVLLDYIEAIKSDGAASLLDPGREVLGRVREGGLIPLSAIIGRTRHDGPNYFAVFRDLS 936

Query: 563  EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
            + K+ +++L  A++ AE+ ++ K+D LAR+SHEIRTPL AI+GF+EV+  +RFG LGN R
Sbjct: 937  QAKKTESELIQARRQAERAANAKADVLARLSHEIRTPLNAILGFTEVMIEERFGALGNER 996

Query: 623  YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
            Y+EY   I  SG  V+ IV+DLLD+S+IE+GK+ L F P  L+E V + + ++Q  AN +
Sbjct: 997  YVEYMKDIRASGERVIAIVSDLLDLSRIETGKLELAFAPQHLNELVEQCVGVMQPQANRE 1056

Query: 683  RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
            RI+IRTS A+ +P ++AD ++++QI LN++  +IH   +GGQ+I+ST  +   +V+LRVR
Sbjct: 1057 RIIIRTSLAHQLPNVVADAQALRQITLNLIGTSIHLANAGGQVIVSTALSDFGDVMLRVR 1116

Query: 743  DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
            DTG  +  +EL  AM+PF   P S        G+ L L KA+V+AN  +F+I + P  GT
Sbjct: 1117 DTGSRLNEHELAAAMEPFRTAPPSDHSSEA-PGVSLSLTKALVEANRAQFHIKTAPHSGT 1175

Query: 803  LIEIIF 808
            LIE+IF
Sbjct: 1176 LIEVIF 1181



 Score = 48.1 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 44/489 (8%), Positives = 106/489 (21%), Gaps = 40/489 (8%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            W ID    +   +    +  G      +G +          DP+      L  +    G
Sbjct: 28  LWAIDGT-RIVWANPVGARLFGAPNGAALGTK-----SFGLADPHRRQVAQLAGRLPPSG 81

Query: 146 KTTLWPIEGTNLYV--PIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
            T L  + G    +   +      +   +    G        + R       L + ++  
Sbjct: 82  ATRLERLRGFGAPLGALVTCGCARLEFADGS-HGVLVVAAEPIGRAMPLVERLQRLVEGI 140

Query: 204 FSHLHEIKKGHSSVE--------------KEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH 249
            + +    +    +                E     ++       R +  +         
Sbjct: 141 ETPIATFARDGLFIGASDAARALLGFRNLAEAGLETARHDALTLGRAEMPIGIGRMVLQR 200

Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY-----TKKQYFGTLQNNSKESFEYLS 304
                      LL    +    Q   H    ++              L           +
Sbjct: 201 VGAGADVGLVALLVPGATEQAAQPRSHPSAADEAQQVSQPDAPQHPDLAKEPPPEPSQPA 260

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364
                +           +  T D    P   +         P+        +        
Sbjct: 261 EPTEAAAEPAEPPPSVGSEATADLAADPLSDHEAPATTPEAPAEFSPLDDAAAPAEPSPA 320

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
             S  L + +     A+        + +     A L     +     A    P   + + 
Sbjct: 321 APSADLISAETPAEPALSWNDAAPVEASAEPVDAALDPAATDD--LAAEHAKPATPSPEP 378

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
           P   P    + +       +  +      L             ++ EG     +   S+L
Sbjct: 379 PAAAPTATADADVALPWFAEP-LPPRRHPLRFT--------WQLDAEGRFSIVSDEFSRL 429

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
            G        + +             H+   I + +    +         +++ L++ + 
Sbjct: 430 IGPRTAAGFGRLWHEIAALFGLDPDRHFAAAIATRNTFSGIMLNWPVDGPDQR-LAVEMS 488

Query: 545 IKKLPFSSC 553
              +     
Sbjct: 489 GLPVQDRDG 497



 Score = 44.6 bits (104), Expect = 0.067,   Method: Composition-based stats.
 Identities = 24/172 (13%), Positives = 49/172 (28%), Gaps = 16/172 (9%)

Query: 317 EGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
           +   L        P   +      + +ANP    L    +   +              L+
Sbjct: 12  DDPRLAIHATSSLPAWLWAIDGTRIVWANPVGARLFGAPNGAALGTKSF--------GLA 63

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           D +  +   L        A   RL  ++       A+      +      +     +  E
Sbjct: 64  DPHRRQVAQLAGRLPPSGA--TRLERLRGFGAPLGALVTCGCARLEFADGSHGVLVVAAE 121

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
            +   +        V +L  ++E     IA   R+G+ +  + A   L G+ 
Sbjct: 122 PIGRAMPL------VERLQRLVEGIETPIATFARDGLFIGASDAARALLGFR 167


>gi|316935647|ref|YP_004110629.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas
            palustris DX-1]
 gi|315603361|gb|ADU45896.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas
            palustris DX-1]
          Length = 1195

 Score =  521 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 225/791 (28%), Positives = 375/791 (47%), Gaps = 24/791 (3%)

Query: 36   TEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPR--TVRFTWNIDAHG 93
                  EN    + EQS   +      S T    + +T    P PR   +RF W ID  G
Sbjct: 404  ASPQAAENEHRPATEQSAAPEPAAAEPSATEAPSAVDTMPEPPAPRRHPLRFVWQIDRDG 463

Query: 94   YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIE 153
             L   S+E  + IG +    +G R  + +  L +DP++ +   L  ++TW G T  WP +
Sbjct: 464  RLAIASDEFLRLIGPHTAANLGERWSEAAVRLGLDPDHRVTAALATRHTWSGITLQWPAD 523

Query: 154  GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
            GT L +PI+++ LP+  +   F+G+RGFG+       +   AL +    + S   +    
Sbjct: 524  GTALRLPIEMSGLPVQDQGGAFAGYRGFGVCRDLAALDQLAALRRHAPHEPSPRPQPLSA 583

Query: 214  HSSVEKEKYDIFSQQSP--PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271
              +   +  D      P   P     +   ++  +    D    +      ++      +
Sbjct: 584  DRTSHDDASDQAPALDPLLNPLDTPVDTPKNVLPFRPANDTRAPSLTPGENSAFHELAQQ 643

Query: 272  QEDFHTINLNQYTKKQYF----GTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE--T 325
                        ++          L+     S    +                   +   
Sbjct: 644  LAARLASETPPTSEAPSIVDDETALEPEMAPSQVPDAPSADRVAPTPSPASGAGARDRLL 703

Query: 326  VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN----NAI 381
            +D  P+   +Y    L YAN +FL    + SV  +E AGGL  L     + D+       
Sbjct: 704  LDLMPVGVLIYRLDRLLYANSAFLARMGFPSVAALEEAGGLDALYVDSGVGDSSSSSETG 763

Query: 382  KPVMLYRSDRT-CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
             P+ +  +         ARL TI W+ + +LA+           PE         ED  +
Sbjct: 764  TPITITAAQGGDAAPTEARLFTIAWDGDQALALICSAATAPIAVPELPFAPTTAIEDAPS 823

Query: 441  RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
             +     E    +L +IL+ T++G+ + +  G I + NR+   LFG+  + ++       
Sbjct: 824  AVGAANAE----ELGAILDTTAEGVLMFDEAGQISAANRSAEALFGHDGDALVAHNLIEL 879

Query: 501  LEQNTPSVMNHYLTEILSLDLRQTLEK--ITLGSTKEEKLLSLRIIIKKLPFSSC-YSLT 557
                + + +  YL  I S   +  L+     LG  +E  L  L + I +       +   
Sbjct: 880  FAPESRAAVLDYLDSIKSGRAQSVLDHGLEALGQVREGGLFPLSMTIGRTRADGPNFFAV 939

Query: 558  MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
              D+S+ ++ + +LS A+++AE+ +  K+D LAR+SHEIR PL AIIGF+EV+  +RFGP
Sbjct: 940  FRDLSQVQRTETELSQARRLAERAAGAKADVLARLSHEIRAPLNAIIGFAEVMIEERFGP 999

Query: 618  LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
            LGN RY++Y   I  SG  V+ IV+DLLD+S+IE+GK++L F  V+L+E V ++++++Q 
Sbjct: 1000 LGNERYVDYMKDIRASGERVIGIVDDLLDLSRIETGKLDLAFASVNLNELVEQSVAVMQP 1059

Query: 678  YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737
             AN +RI+IRTS A+ +P ++AD ++++QI +N++  +IH   +GGQ+I+ST  +   EV
Sbjct: 1060 RANRERIIIRTSLAHLLPAVVADAQALRQIIMNLIGTSIHLANAGGQVIVSTALSDVGEV 1119

Query: 738  ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
            +LR+RDTG  + + EL  A++PF     +   R E  G+ L L KA+V+AN   F+I S 
Sbjct: 1120 MLRIRDTGSRLNDDELAAALQPFRT--PAPSDRTEAAGVSLSLTKALVEANRATFHIKSA 1177

Query: 798  PAKGTLIEIIF 808
            P  GTLIE++F
Sbjct: 1178 PQSGTLIEVVF 1188



 Score = 43.9 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 18/172 (10%), Positives = 45/172 (26%), Gaps = 16/172 (9%)

Query: 317 EGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
           +   L        P   +      + +ANP    L    +  ++                
Sbjct: 12  DDPRLAVHATRTLPAWLWSIDGSRVLWANPVAARLFGAANASELAG-----RSFRPADPH 66

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
                +  +    +        RL  ++       A+      +      +        E
Sbjct: 67  RRQVAQLAVKLPPNGAT-----RLERLRGFGAPLGALVTCACTRLGFADGSAGVLVAATE 121

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
            +   +        + +L  ++E     IA    +G+ + ++ A   L G+ 
Sbjct: 122 SIGRPMPL------IDRLRGLVEGVDTPIAAFASDGLFVGSSAAARTLLGFR 167


>gi|91975926|ref|YP_568585.1| histidine kinase A-like [Rhodopseudomonas palustris BisB5]
 gi|91682382|gb|ABE38684.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas
            palustris BisB5]
          Length = 1201

 Score =  517 bits (1332), Expect = e-144,   Method: Composition-based stats.
 Identities = 211/809 (26%), Positives = 369/809 (45%), Gaps = 42/809 (5%)

Query: 35   ETEKSKKENPCHDSFEQSNFTDQNQE--SVSNTNYLDSENTFVFDPIPRTVRFTWNIDAH 92
            E E + + +P     +  +   +     +V      +        P    +RF W +D+ 
Sbjct: 393  EAEPTAEHHPLDVPSQDDSELAEPAMILAVEPEPSSELAAYEPLPPRRHPLRFVWQLDSD 452

Query: 93   GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPI 152
                  S+E  +  G       G    ++   L +DP++     +  ++TW G T  WP 
Sbjct: 453  SRFTVRSDEFIRLAGPRTIAHFGQPWTEIRAALDLDPDDSFAQAIATRHTWSGITLQWPA 512

Query: 153  EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR---------LDKK 203
            +G +  +P++++ LP+  R+  F+G+RGFG+       +   A  +R             
Sbjct: 513  DGASRRLPVEMSGLPVQDRDGNFTGYRGFGVCRDLDGLDQLAARRQRGGTDEHPPRSLSA 572

Query: 204  FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
             S   +      + E    D   QQ     +     V      +  +   L   +     
Sbjct: 573  DSTPRDTTLVGDATETAATDASYQQQSDIIVDTPRNVLPFRPIHDVRSPALTPVENSAFN 632

Query: 264  SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP-------------- 309
                 L E+ +    N  +    +       ++       ++   P              
Sbjct: 633  ELARQLSERLESDAANAAERLFAEAPTDAPQDTIVEQPPKANEAAPSDTTTPLEQPATPK 692

Query: 310  -----SLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364
                  L+             +D  P+   +Y    L YAN +FL    + ++  +E AG
Sbjct: 693  ADWLAPLATPAKGDSARDRVLLDLMPVGVLIYRLDRLIYANTAFLQRMGFATLSALEEAG 752

Query: 365  GLSTLLDAPKLSDNNAIKPVM--LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
            GL TL     ++ +++       +  +       + RLH I+W+ + +LA+ F    +  
Sbjct: 753  GLDTLYVEEGVTGSSSTSESGTPITVTTTQSAPTAGRLHAIEWDGDQALALIFSATAEPI 812

Query: 423  QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
                       E     + +     E    +L +IL+ T++GI + + +G I + NR+  
Sbjct: 813  AEVGAATPIAPEIN-APSDVGHANAE----ELGAILDTTAEGILMFDADGRISACNRSAE 867

Query: 483  KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK--ITLGSTKEEKLLS 540
             LFGY  +D++++         +   +  Y   + +      L+     LG  +E  LL 
Sbjct: 868  ALFGYDGDDLVQRNIAELFAPESNGAVLDYFDSVKAGSAESLLDHGLEALGRVREGGLLP 927

Query: 541  LRIIIKKL-PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
            L + I +  P    +     D+S+ ++ + +L+  +K+AE+ +  K+D LAR+SHEIRTP
Sbjct: 928  LTMTIGRTQPDGPNFFAVFRDLSQARKIETELNQVRKLAERAAGAKADVLARLSHEIRTP 987

Query: 600  LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
            L AIIGF+EV+  +RFG LGN RY EY   I  SG  V+ IV+DLLD+S+IE+GK+ L F
Sbjct: 988  LNAIIGFAEVMIEERFGALGNDRYGEYMKDIRASGERVIGIVSDLLDLSQIETGKLELSF 1047

Query: 660  EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719
               +L+E V + ++++Q  AN +RI+IRTS A+ +P ++AD ++++QI +N++  +IH  
Sbjct: 1048 TSQNLNEMVEQCVAVMQPRANRERIIIRTSLAHLLPTVVADPQALRQIVMNLIGTSIHLA 1107

Query: 720  PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
             +GGQ+I+ST  +   EV+LRVRDTG  +   E+  A++PF     S +     +G+ L 
Sbjct: 1108 NAGGQVIVSTALSDFGEVVLRVRDTGQRLNESEIVAALQPFNTPAPSDRSET--SGVSLS 1165

Query: 780  LAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            L KA+V+AN  KF+I S P  GTLIE++F
Sbjct: 1166 LTKALVEANRAKFHIKSAPQSGTLIEVVF 1194



 Score = 44.6 bits (104), Expect = 0.069,   Method: Composition-based stats.
 Identities = 25/223 (11%), Positives = 57/223 (25%), Gaps = 27/223 (12%)

Query: 317 EGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
           +   L        P+  +      + +ANP    L    +  ++                
Sbjct: 12  DDPRLAVHATRALPVWLWSVDGTRVLWANPVGARLFGANNGKELGA-----RTFGPADPH 66

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
                +       +        RL  ++       A+      + +             E
Sbjct: 67  RRLVAQLAGRLPPNGAT-----RLERLRGFGARLGALVTCACARLDFADGTAGVLIAAAE 121

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
            +   ++       V +L  ++E+    IA   R+G+ + ++ A   L G          
Sbjct: 122 PIGRPMSL------VDRLRGLVESIDTPIAAFARDGLFIGSSAAARTLLG---------- 165

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
           F    E          L    S +    + ++ L        +
Sbjct: 166 FRNLTEAGLDQARADALRNGRS-ETPIGIGRMVLQRVGSGSDV 207


>gi|86748594|ref|YP_485090.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas
            palustris HaA2]
 gi|86571622|gb|ABD06179.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas
            palustris HaA2]
          Length = 1149

 Score =  517 bits (1332), Expect = e-144,   Method: Composition-based stats.
 Identities = 212/812 (26%), Positives = 360/812 (44%), Gaps = 51/812 (6%)

Query: 37   EKSKKENPCHDS-FEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYL 95
            + +  + P      ++   T    E       + + +     P    +RF W +D     
Sbjct: 342  QPAPADAPSQQQSEDEEPATILAVELEP---RVAATSVAPSPPRQHPLRFVWQLDGDSRF 398

Query: 96   KEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGT 155
               S+EL   IG       G    ++   L +DP++     +  ++TW G T  WP +G+
Sbjct: 399  SVKSDELICLIGPRTAAQFGRSWAEIRAALALDPDDRFAQAIATRHTWSGITLHWPADGS 458

Query: 156  NLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHS 215
               +P++++ LP+  R+  F+G+RGFG+        D  A+ +R D              
Sbjct: 459  GDRLPLEMSGLPVQDRDGHFTGYRGFGVCRDLDGL-DRLAMLRRHDGADEPPPRSLSADF 517

Query: 216  SVEKEK----------YDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
            +                D    Q+    +     V         +   L   +       
Sbjct: 518  TPRDATPAADAEHAPMTDTSDHQASDIIVDTPRNVLPFRPVQDARSPALTPVENSAFNEL 577

Query: 266  ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN----- 320
               L E+ +       +    Q       ++                A  DE        
Sbjct: 578  ARQLAERLESDAAGAAERLFAQAANDQAPDAPADATPAEDTATAEAVASNDEPAAPSEPA 637

Query: 321  -------------------LTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIE 361
                                    +D  P+   +Y    L YAN +FL L  + S+  +E
Sbjct: 638  APKADWLAPLATPAKGDSTRDRVLLDLMPVGVLIYRLDRLLYANAAFLQLMGHASLSALE 697

Query: 362  IAGGLSTLLDAPKLSDNNAIKPV--MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
              GGL  L     +  ++        +  +       +ARLHTI+W+ + +LA+ F    
Sbjct: 698  EEGGLDALYVEEGVGGSSGTSEAGTPITVATPYSAPTAARLHTIEWDGDQALALIFDGTA 757

Query: 420  KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
            +             EP    + +     E    +L +IL+ T++GI + +  G I + NR
Sbjct: 758  ERPADVVAAASIAPEPN-APSDVGHANAE----ELGAILDTTAEGILMFDAGGRISACNR 812

Query: 480  AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK--ITLGSTKEEK 537
            +   LFGY  ++++++         +   +  Y   + S      L+     LG  +E  
Sbjct: 813  SAEALFGYDGDELVQRSIAELFAPESNDAVRAYFDSVKSGSAESLLDHGLEALGRVREGG 872

Query: 538  LLSLRIIIKKL-PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
            L  L + I +  P    Y     D+S+ ++ + +L   +K+A++ +  K+D LAR+SHEI
Sbjct: 873  LFPLTMTIGRTQPDGPNYFAVFRDLSQARRIEVELDQVRKLADRAAGAKADVLARLSHEI 932

Query: 597  RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
            R PL AIIGF+EV+  +RFG LGN RY +Y   I  SG  V+ IV DLLD+S+IE+GK++
Sbjct: 933  RMPLNAIIGFAEVMIEERFGALGNERYADYLKDIRASGERVIGIVGDLLDLSRIETGKLD 992

Query: 657  LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716
            L F   +L+E V + ++++Q  AN +RI+IR+S A+ +P + AD ++++QI LN++  +I
Sbjct: 993  LAFTSQNLNELVEQCVAVMQPRANRERIIIRSSLAHALPSVTADAQALRQIVLNLIGTSI 1052

Query: 717  HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
            H   +GGQ+I+ST  +   EV+LRVRDTG  + + E+  A++PF     +   R E +G+
Sbjct: 1053 HLANAGGQVIVSTALSDFGEVVLRVRDTGHRLNDSEIAAALQPFST--PAPSERSEASGV 1110

Query: 777  GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
             L L KA+V+AN  +F+I S P  GTLIE++F
Sbjct: 1111 SLSLTKALVEANRAQFHIKSAPQSGTLIEVVF 1142



 Score = 43.5 bits (101), Expect = 0.17,   Method: Composition-based stats.
 Identities = 44/504 (8%), Positives = 110/504 (21%), Gaps = 44/504 (8%)

Query: 68  LDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI 127
           +D     V       V + W++D    +   +    + +G    K +G R+         
Sbjct: 11  VDDPRLAVHATGALPV-WLWSVDGT-RVLWANPVGARLLGAEHGKALGARI-----FGPA 63

Query: 128 DPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYV--PIDLAALPIYSRNREFSGFRGFGIVH 185
           DP+  +   L  +    G T L  + G    +   +      +   +       G  I  
Sbjct: 64  DPHRRLVMQLAGKLPPNGATRLERLRGFGARLGGLVTCGCARLTFADGS----SGVLI-- 117

Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP-----PHLRMKNKV 240
                 +P      L ++   L E      +            +            +  +
Sbjct: 118 ---AAVEPVGQPMPLVERLRGLVEGSDTPIAAFGRDGLFIGSSAAARTLLGFRNLTEAGL 174

Query: 241 SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF 300
                                +  +            +                 S+ + 
Sbjct: 175 DQARAEALQNGRAETPIGIGRMVLQRVGSGGDIGLVALLEPGEPVATDRTPEVPISQPAA 234

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDD 359
                           E +    E +D        +   G            T      D
Sbjct: 235 VASDIPIDGPSETVPPESDVPDDEAIDTISEAPAEFTRLGETL-----AEAQTDIPPTQD 289

Query: 360 IEIAGGLSTLLDA-PKLSDNNAIKPVMLYRSDRTCIAASARL---HTIQWNRENSLAMTF 415
              A   S L+      S   A        +    +   +     H  +   + + A   
Sbjct: 290 NATADEPSPLVVPVADESPAEADASTHESAATPESLPEDSVAPQPHDAEATDQPAPADAP 349

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
              +  ++ P  +    +EP    T +         ++           +  ++ +    
Sbjct: 350 SQQQSEDEEPATILAVELEPRVAATSVAPSPPRQHPLRF----------VWQLDGDSRFS 399

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
             +  +  L G        + +            +    + ++     +   +   +   
Sbjct: 400 VKSDELICLIGPRTAAQFGRSWAEIRAALALDP-DDRFAQAIATRHTWSGITLHWPADGS 458

Query: 536 EKLLSLRIIIKKLPFSSCYSLTMH 559
              L L +    +     +     
Sbjct: 459 GDRLPLEMSGLPVQDRDGHFTGYR 482


>gi|115526058|ref|YP_782969.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas
            palustris BisA53]
 gi|115520005|gb|ABJ07989.1| PAS/PAC sensor signal transduction histidine kinase [Rhodopseudomonas
            palustris BisA53]
          Length = 1184

 Score =  508 bits (1307), Expect = e-141,   Method: Composition-based stats.
 Identities = 211/761 (27%), Positives = 369/761 (48%), Gaps = 33/761 (4%)

Query: 77   DPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL 136
            +P    +RFTW +DA G     S+E  + IG       G    +++++  +DP+    + 
Sbjct: 421  EPRRHPLRFTWQLDAEGRFSIGSDEFSRLIGPRTSAGFGRLWSEIAEVFGLDPDRRFAEA 480

Query: 137  LKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRAL 196
            +  + TW G T LWP++  +  + ++++ LP   R+  + G+RGFG+           AL
Sbjct: 481  IASRRTWSGITLLWPVDVPDQRLRVEMSGLPAQDRDGRYIGYRGFGVCRDLEGLTRLAAL 540

Query: 197  GK------------RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244
             +                    +               D      P  ++   + V    
Sbjct: 541  RRGDTAELPPRPLSADCPPAESVAANPSADIPQPSAAGDFLQPADPESNVETPHNVLPFR 600

Query: 245  EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
                 +   L   +          L  + +   + L   T  +      +    +   ++
Sbjct: 601  PTVDGRSLSLTPVENSAFNELARQLSARLESDALELASDTPSETLADEASAPPSAPSPVN 660

Query: 305  HRNH--PSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEI 362
             +        A      +     +D  P+   +Y    L YAN +FL    Y S++ +E 
Sbjct: 661  EQPDWLAPAIAPARGDSSRDRLLLDLLPVGVLIYRLDRLLYANAAFLARMGYDSLNALEQ 720

Query: 363  AGGLSTLLDAPKLSDNNAIKPV--------MLYRSDRTCIAASARLHTIQWNRENSLAMT 414
            AGGL  L    ++  +++                S+    +A+ RLH+I W+ E ++A+ 
Sbjct: 721  AGGLDVLFVESEVESSSSSSETGAPITIAPATTGSEPPHRSAAGRLHSISWDTEPAMALI 780

Query: 415  FIPFEKANQFPENMPQNGIEPEDVDTRINKRKME----IEVMQLCSILEATSDGIAIINR 470
            F   E  +Q       +G EP+     I   +      +   +L +IL+ T+DG+ + + 
Sbjct: 781  FSGTEAESQAENQ--ADGHEPDRATPSIAAGEASPVGHVNAEELAAILDTTTDGVVMFDA 838

Query: 471  EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KI 528
             G + + NR+   LFG   +++++K  T      + + +  YL  + + D +  L+  + 
Sbjct: 839  GGRLHACNRSAEALFGVNGDELMQKSLTELFAPESQATLAAYLETVKNADAQSLLDHGRD 898

Query: 529  TLGSTKEEKLLSLRIIIKKLPFSSC-YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
             LG      +L L +II +       Y     D+S+ ++ + +L+ A+++AE  +S K+D
Sbjct: 899  LLGLVHNGGMLPLAVIIGRTSADGPNYFAVFRDLSQARKTETELAQARRLAEHSASAKAD 958

Query: 588  FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
             LAR+SHEIRTPL AI+GF+EV+  +R G LGN RY EY   I  SG  V+ ++NDLLD+
Sbjct: 959  VLARLSHEIRTPLNAILGFAEVMIEERLGALGNERYTEYLKDIRASGERVISVINDLLDL 1018

Query: 648  SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707
            S+IE+G+++L F P++L+E V + + ++Q +AN +RI+IRTS A+ +P + AD  +++QI
Sbjct: 1019 SRIETGQLDLAFAPLNLNEMVEQCVGVMQPHANRERIIIRTSLAHTLPPVSADAAALRQI 1078

Query: 708  ALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
            ALN+++ +I    +GGQ+I+ST  + + EV+LRVRDTG  + + EL  AM+PF   P+  
Sbjct: 1079 ALNLIATSIGLANAGGQVIVSTALSDSGEVMLRVRDTGQRLNDDELAAAMQPFRSAPSDS 1138

Query: 768  QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
                  +G+ L L KA+V+AN  +F I + P  GTLIE+IF
Sbjct: 1139 ATEA--SGVSLSLTKALVEANHARFQIKTAPHSGTLIEVIF 1177



 Score = 43.5 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 22/218 (10%), Positives = 60/218 (27%), Gaps = 27/218 (12%)

Query: 330 PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389
           P   +      + +ANP    L   +S   +      S           +  +  ++   
Sbjct: 25  PAWLWTLDGARIVWANPVGASLFGARSSAALSAKAFRSA----------DPHRRQIVQLG 74

Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449
            +   + + RL  ++       A+      + +          +    +   +       
Sbjct: 75  QQLPASGAIRLQRLRGFGAPLGALVTCACSRLDFADGQAGILIVAAAPIGRAMPL----- 129

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
            + +L  ++E     IA    +G+ +  + A   L G+             L   +    
Sbjct: 130 -IERLQRLVEGIDTPIASFAPDGLFIGASEAARALIGFRD-----------LTDASLDAA 177

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
                +    +L   +  + L        ++L  ++  
Sbjct: 178 RKAALQSGRAELPIGIGHMVLQRVGSGADVALVALLAP 215



 Score = 41.9 bits (97), Expect = 0.44,   Method: Composition-based stats.
 Identities = 54/435 (12%), Positives = 119/435 (27%), Gaps = 30/435 (6%)

Query: 19  KGNTQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDP 78
           +G+T +L  + +       +S   NP  D  + S   D  Q +   +N     N   F P
Sbjct: 542 RGDTAELPPRPLSADCPPAESVAANPSADIPQPSAAGDFLQPADPESNVETPHNVLPFRP 601

Query: 79  IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK 138
                  +     +    E++ +L   + + A ++      +        P +    + +
Sbjct: 602 TVDGRSLSLTPVENSAFNELARQLSARLESDALELASDTPSETLADEASAPPSAPSPVNE 661

Query: 139 RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
           + +       + P  G +    + L  LP+           G  I  ++R+     A   
Sbjct: 662 QPDWLA--PAIAPARGDSSRDRLLLDLLPV-----------GVLIYRLDRLLYANAAFLA 708

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
           R+     +  E   G   +  E     S  S      +    ++      H+    +   
Sbjct: 709 RMGYDSLNALEQAGGLDVLFVESEVESSSSSSETGAPITIAPATTGSEPPHRSAAGRLHS 768

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
               T    +L     F         + Q  G   + +  S           ++A     
Sbjct: 769 ISWDTEPAMAL----IFSGTEAESQAENQADGHEPDRATPSIAAGEASPVGHVNAE---- 820

Query: 319 ENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
                  +D       ++   G L   N S   L      + ++    L+ L      + 
Sbjct: 821 --ELAAILDTTTDGVVMFDAGGRLHACNRSAEALFGVNGDELMQK--SLTELFAPESQAT 876

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
             A    +     ++ +     L  +  N      M  +         +      +  + 
Sbjct: 877 LAAYLETVKNADAQSLLDHGRDLLGLVHNGG----MLPLAVIIGRTSADGPNYFAVFRDL 932

Query: 438 VDTRINKRKMEIEVM 452
              R  + ++     
Sbjct: 933 SQARKTETELAQARR 947


>gi|298290623|ref|YP_003692562.1| PAS/PAC sensor signal transduction histidine kinase [Starkeya
           novella DSM 506]
 gi|296927134|gb|ADH87943.1| PAS/PAC sensor signal transduction histidine kinase [Starkeya
           novella DSM 506]
          Length = 874

 Score =  505 bits (1300), Expect = e-140,   Method: Composition-based stats.
 Identities = 199/762 (26%), Positives = 330/762 (43%), Gaps = 56/762 (7%)

Query: 80  PRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR 139
               RFTW       +  +   L   +G    ++ G+    +               L+ 
Sbjct: 130 DAPTRFTWRTGLDARIGHVDPRLASALGRVPEEIAGLDWQALGAP------GAHRAALE- 182

Query: 140 QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199
             ++     L P       + I+L   PI        G RGFG++   R   +       
Sbjct: 183 GLSFSRLPVLLPTA-RGDALDIELGGAPIRGE-----GMRGFGLIKGRRASPERPVQAPA 236

Query: 200 LDKKFSHLHEIKKGHSSVEK-----------------------------EKYDIFSQQSP 230
                  +                                                    
Sbjct: 237 PRPAAPPIVPPVAPPIPPRAAEPPPAPAAPTAPAAAEPTSPVRVTLSLVPSAPNVVPLRG 296

Query: 231 PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG 290
                ++     L+    +    +       L   +   P   +                
Sbjct: 297 NGENGVRASWEGLSNGERNAFREIARALGAKLEGVDDDFPPPAEPAPAEPAAAPAPTASV 356

Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLL 350
            +   ++           P          +     +D+ P+    +   +L YAN + L 
Sbjct: 357 AIPPAAELPAAVPPLPPRPEPEGLQRVLSDGERPVLDRLPLAMLAFRGDHLLYANRALLE 416

Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
            T +  +  +E AGGL+TL  A +   +   + + L  +    I   ARL +  W    +
Sbjct: 417 WTGHADLAALEAAGGLATLFGAQRAGGDEESRALTLLTATGHGITVEARLMSAPWEGGTA 476

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470
           +       +              +       +  R+ E    +L +IL+  +DG+ +I++
Sbjct: 477 MLYVLHRLD-----------AVTDERIRQAELALRQAENAERELRAILDTATDGVVLIDK 525

Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KI 528
            G ILS N     LFG+   D+  +  T+ L   +      YL  + S  +   L   + 
Sbjct: 526 AGTILSMNHPAEALFGFNAGDVQGEAITLLLAPESHRAAIDYLDGLASNGVASVLNDGRE 585

Query: 529 TLGSTKEEKLLSLRIIIKKLPFSSC-YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
            +G  +E  L+ L + + ++      +   + DI++WK+ + +L+ AK +AE+ +  KSD
Sbjct: 586 VIGRVREGGLIPLFMTMGRIGDDPTKFCAVLRDITQWKKAEEELTEAKHLAERANLAKSD 645

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           FLA++SHEIRTPL AIIGFSEV+  +RFG + N RY +Y   I  SG  ++ ++NDLLD+
Sbjct: 646 FLAKISHEIRTPLNAIIGFSEVMMEERFGAIENQRYRDYLRDIHSSGEHLISLINDLLDL 705

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707
           SKIE+GK++L F  V+L+E V + ++++Q  AN +RI++R+S A ++P ++AD RS++QI
Sbjct: 706 SKIEAGKLDLAFTSVALNEIVQQCMAIMQPQANRERIVVRSSLATDLPPVVADARSIRQI 765

Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
            LN++SN++ FT  GGQ+I+STT T   EV+LRVRDTG+GM+  ++  AM+PF QI  S 
Sbjct: 766 VLNLVSNSVKFTQPGGQVILSTTLTEQGEVVLRVRDTGIGMSEADIAIAMEPFRQIATSG 825

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +    GTGLGLPL KA+ +AN   F I S    GT++EI FP
Sbjct: 826 RAGSGGTGLGLPLTKALAEANRASFNIRSAVDVGTIVEITFP 867


>gi|217979578|ref|YP_002363725.1| PAS/PAC sensor signal transduction histidine kinase [Methylocella
           silvestris BL2]
 gi|217504954|gb|ACK52363.1| PAS/PAC sensor signal transduction histidine kinase [Methylocella
           silvestris BL2]
          Length = 836

 Score =  504 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 216/756 (28%), Positives = 334/756 (44%), Gaps = 83/756 (10%)

Query: 61  SVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCD 120
           +       +  +    D      RF W  DA   L E+   LP+ IG    +++G +L  
Sbjct: 138 AAPPEAPAEISSVGRPDRGG-PARFLWRTDAEDRLIEVGPRLPEAIGEPKAELLGQKLAR 196

Query: 121 VSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRG 180
           +      D    +  L + + +W G    WP+ G +   P+ +A  P++   R+  GFRG
Sbjct: 197 LVAGFDADKGMELARLFEARESWSGLDLAWPVAGEDFIAPVTIAGSPVFDHRRQLLGFRG 256

Query: 181 FGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV 240
           FG++H  R                                           P  R+    
Sbjct: 257 FGLIHPRRA----------------------------------------AAPDSRIPES- 275

Query: 241 SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF 300
                        +   + PL      S P+  +    + +    +     L +  ++ +
Sbjct: 276 ------------KIIVLRSPLEAGAGPSAPQGPEQGADDASISGSRARLADLASRLEQEW 323

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDI 360
                 N    +A  D   N      D  PI   V  +G   +AN   L L         
Sbjct: 324 PAPPRANPRQSAAEPDPLPNGAKAAFDVLPIGVLVCGNGAALFANRFLLDLLGCADFAS- 382

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
                 +   +A +           L   D +  A   R+                   +
Sbjct: 383 ------AKFREAIQPVMTRPASAEYLELRDGSGRAVRLRVARAPLPHGPEWLEAISLAPQ 436

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
            +                      ++++ E  +L +IL+   +G+A+I+  G I S NR+
Sbjct: 437 PSAARSGAEP------------ELKRLQREARELNAILDTAMEGVAVIDSAGRIKSLNRS 484

Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKL 538
              LF Y   ++  +PFTV +   +      Y   + S  + +     +  LG T++   
Sbjct: 485 GEALFCYDKAEVAGEPFTVLVAPESRERALAYFEGLKSNGVAEVFNDGREILGLTRQGGQ 544

Query: 539 LSLRIIIKKLPF------SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
           + + + + K+           Y   + D++ WK+ + +L  A++ AE+ S+ KSDFLA+V
Sbjct: 545 IPIFMTLGKIGSSAASGIDQRYCALLRDMTHWKKVERELDDARREAERASALKSDFLAKV 604

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHEIRTPL AIIGF+EVI  +RFGP+GN RY +Y   I  SG+LV+ +VNDLLD+SKIE+
Sbjct: 605 SHEIRTPLNAIIGFAEVIMEERFGPIGNARYKDYLKDIHSSGSLVMSLVNDLLDLSKIEA 664

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712
           GKM+L FE V  +  V+E +S++Q  A+  R++IR S A  +P I AD RSV+QI LN+L
Sbjct: 665 GKMDLSFEAVDANRIVTECVSIMQPQASSARVVIRLSLAPQLPHIFADERSVRQIVLNLL 724

Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           SNAI FT  GGQ+I+ST         LR+RDTGVGM+  +L+ A++PFGQ    +     
Sbjct: 725 SNAIKFTQGGGQVIVSTALNDENCAALRIRDTGVGMSEGDLKVALEPFGQA--PRARGSG 782

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           GTGLGLPL KA+V+AN   F I S    GTL+E+ F
Sbjct: 783 GTGLGLPLTKALVEANRASFSIKSKVQDGTLVEVAF 818


>gi|296448146|ref|ZP_06890045.1| PAS/PAC sensor signal transduction histidine kinase [Methylosinus
           trichosporium OB3b]
 gi|296254327|gb|EFH01455.1| PAS/PAC sensor signal transduction histidine kinase [Methylosinus
           trichosporium OB3b]
          Length = 899

 Score =  504 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 212/770 (27%), Positives = 335/770 (43%), Gaps = 43/770 (5%)

Query: 42  ENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEE 101
           +            +     +        S+         R  RF W  DA G +  ++  
Sbjct: 163 DPEPPSVPAVEPESAPEPRAGEPAGEPASKPA-------RPERFIWRTDAEGRVVVVTGA 215

Query: 102 LPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPI 161
           L   +G     + G    + +  L +DP   + ++L  + +W G    WP++G    VP+
Sbjct: 216 LADVVGRDNSDIAGRSFVETARRLRLDPRGRLDEVLASRRSWSGVELDWPLQGGGARVPV 275

Query: 162 DLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEK 221
            L ALPI+   R F GF+G+G++HV R                          +   +  
Sbjct: 276 TLGALPIFDDARRFGGFQGYGVLHVGR----------------LRFEPPAAEPAPPAEAP 319

Query: 222 YDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLN 281
                     P +    KV  L    A               +        E    +   
Sbjct: 320 EAAAELPEAAPLVSTGGKVVPLRPQLALPRFEDGAAAAGEPLTASERAAFDEISRALGAG 379

Query: 282 QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNL 341
             T K     L     ++         P        G       +D+ P+   V      
Sbjct: 380 ARTGKGPARELIEAVGQATGCEPPA-WPESDEAEPIGLARARALLDRLPVGVLVARGAQA 438

Query: 342 FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP--VMLYRSDRTCIAASAR 399
            YAN + L    Y  +  +   GG + L   P+L D +      + L   D   + A AR
Sbjct: 439 LYANRTLLDYLGYPDLTALAAEGGAARLFVGPRLQDASEGGANVLELRGEDGERLDADAR 498

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459
           L  I W+   +  +T      A    E      +E E           + E+ +L + LE
Sbjct: 499 LQAIDWDGGPATLVTLRSARPAAGAAEAARLGALENELARR-------QSEMEELRTTLE 551

Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL 519
           AT    A+++R+G I S +    +L G   E +  +P      +   + +  YL      
Sbjct: 552 ATGAAYAVLDRDGRIRSASGGFGRLLGEEPEALAGEPLAALFAEADRAAVADYLR----G 607

Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579
                         ++    +L++ +  +         + ++   +     L  A++ AE
Sbjct: 608 REPGADGLRASVRARKG---ALQLTLVGIGAEQRRCAVLRELGPRRGADEALEAARREAE 664

Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639
           + ++ K+DFLA+VSHE+RTPL AIIGF+EV+  +RFGPLG+ RY EY   I  SG  VL 
Sbjct: 665 RANAAKTDFLAKVSHEVRTPLNAIIGFAEVMMEERFGPLGSERYKEYLKDIHTSGLHVLS 724

Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA 699
           +VNDLLD+SKIE+GKM L  E +  +  ++E +S++Q  AN  R+LIR S    +PR+LA
Sbjct: 725 LVNDLLDLSKIEAGKMELDVERIDANAMIAECVSIMQPQANRSRVLIRLSLWPRLPRVLA 784

Query: 700 DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKP 759
           D RS++QI LN+LSNA+ F  +GGQ+I+S+  T    V++RV+DTG+GM+  E+E A++P
Sbjct: 785 DGRSLRQILLNLLSNAVKFNEAGGQVIVSSALTDAGYVVIRVKDTGIGMSESEIETALEP 844

Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           F Q+      +  GTGLGLP+ KA+++AN   F I S   +GTL+E+ FP
Sbjct: 845 FRQVGP---HKASGTGLGLPVTKALIEANRASFSITSRRNEGTLVEVAFP 891


>gi|146338328|ref|YP_001203376.1| two-component hybrid sensor and regulator [Bradyrhizobium sp. ORS278]
 gi|146191134|emb|CAL75139.1| Two-component hybrid sensor and regulator [Bradyrhizobium sp. ORS278]
          Length = 1151

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 208/827 (25%), Positives = 357/827 (43%), Gaps = 77/827 (9%)

Query: 43   NPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEEL 102
             P  D+ +       +  S                     +RF+W IDA G     S+E 
Sbjct: 330  PPIPDAPDAQTKIAADDASTPG--------------RRHPLRFSWQIDAEGRFSLGSDEF 375

Query: 103  PKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPID 162
             + IG  +   +G    +++  L +DP   +   +  + TW     +WP       + ++
Sbjct: 376  ARLIGPESAGHLGQPWPEIASSLGVDPEGRVSAAIATRETWSNLVVIWPAAA-GERLAVE 434

Query: 163  LAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK---------------KFSHL 207
            L+ LP+++ ++ +SG+RGFG+       N   A+ +                    F   
Sbjct: 435  LSGLPVFTADKVYSGYRGFGVCRDIDALNRLDAVRRSDAGPSDAPDADDIDDAPPDFVAS 494

Query: 208  HEIKKGHSSVEKEKYDIFSQQSP-------------------------PPHLRMKNKVSS 242
               +  H+         +   +P                         P     ++K+ +
Sbjct: 495  RPAQSDHAPAADVPPPQYIVAAPSRDASIAAEAPHIDGVGLEAAGNVVPFRAPGESKLPA 554

Query: 243  LTEYYAHKDDVLKTEKYPLLTSEES-----SLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297
            LT    +    L  +    L  E       + P  E    ++       Q    + + + 
Sbjct: 555  LTPVENNAFHELARQLSARLEGEIRNPAELAGPTLEPAARVSDPFGPPHQDASGMTDVAG 614

Query: 298  ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSV 357
                 L                      +D  P    +Y    L YANP+F     Y  +
Sbjct: 615  AQGNGLQTDWLAPEVPPAHGDSQRDRILLDLLPTGMLIYRLDRLLYANPAFFKQMGYADL 674

Query: 358  DDIEIAGGLSTLLDAPKLS----DNNAIKPVMLYRSDR---TCIAASARLHTIQWNRENS 410
              +E AGGL  L   P          A  PV +  +D      I A ARL TI W+ + +
Sbjct: 675  PTLEQAGGLDALYVEPGAPSGTSRPEAGTPVTISAADGSTSEEIKAEARLFTITWDGDTA 734

Query: 411  LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK------RKMEIEVMQLCSILEATSDG 464
             A+ F P            +         +               E   L +IL+ T++G
Sbjct: 735  HALIFAPAPGPAAALPATVETPPVQAPAPSATPLVVAPPPSAGHAEAEDLAAILDVTAEG 794

Query: 465  IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
            I + +  G I + NR+   LFGY   ++ R+         +  ++  YL  +        
Sbjct: 795  ILMFDAGGNIHACNRSAEALFGYDGVELARRNLIELFAPESARLVLDYLDSVQQAGASGA 854

Query: 525  LE--KITLGSTKEEKLLSLRIIIKKLPFSSC-YSLTMHDISEWKQEKNKLSHAKKIAEKE 581
            L+  +  LG   +   + L I I +       +     D+S+ ++ +++L HA+++A++ 
Sbjct: 855  LDQGREVLGKIAQGGAIPLSITIGRTRADGPNFFAVFRDLSQLRRGESELLHARRVADRA 914

Query: 582  SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
            ++ K+D LAR+S E+R PL AIIGF+EV+  +RFG LGN RY EY   I  SG  V+ ++
Sbjct: 915  ANAKADMLARISQEVRAPLNAIIGFAEVMIGERFGTLGNARYAEYMKDIRASGERVVSLI 974

Query: 642  NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701
            +DLL++S+IE+GK+ L F   +L+E V   ++++Q  AN  RI+IRTS +  +P ++AD 
Sbjct: 975  DDLLELSRIETGKLELAFTAQNLNELVESCVAVMQPQANRARIIIRTSLSQALPPVIADT 1034

Query: 702  RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761
            R+++QIA N++S +I    +GGQ+I+ST  +   EV+LRVRDTG  + +  +  A++PF 
Sbjct: 1035 RALRQIATNLISASISLANAGGQVIVSTAMSDFGEVVLRVRDTGHALNDQAVAAALEPF- 1093

Query: 762  QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            +     +   +G+GL L L KA+V+AN  +F+I + P  GTL+E++F
Sbjct: 1094 RATAGAEFGADGSGLSLSLTKALVEANRAQFHIKAAPKSGTLMEVVF 1140



 Score = 44.6 bits (104), Expect = 0.071,   Method: Composition-based stats.
 Identities = 22/254 (8%), Positives = 60/254 (23%), Gaps = 24/254 (9%)

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
            H            L        P   +      + +AN          +V  +     +
Sbjct: 2   THADFEMLALSDPRLAVHAAGALPAWLWSSDGSRVLWANAIGARALGATNVPAL-----V 56

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
           +              +                RL  ++        +      + +    
Sbjct: 57  TRTFGPADSHRRQIAQLGRRLPETGAL-----RLERLRGFGAPLGTLATCGCARIDLPDG 111

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
                    +     +          +L  ++E +   +    ++G     + A  +LFG
Sbjct: 112 THGVLIASSDTGGRSLPLA------ERLKRLVEPSEHAMIAFTQDGQFTGISTAGRRLFG 165

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
                               + +   + E+     R  L +  +GS  +  L+++ +   
Sbjct: 166 MHDLSDA------CFTAARGAALADGIAEVTLGTERAALHR--IGSGNQTALVAVPLPAL 217

Query: 547 KLPFSSCYSLTMHD 560
                +    ++ D
Sbjct: 218 SDEADAPGPASITD 231


>gi|209884263|ref|YP_002288120.1| PAS/PAC sensor signal transduction histidine kinase [Oligotropha
            carboxidovorans OM5]
 gi|209872459|gb|ACI92255.1| PAS/PAC sensor signal transduction histidine kinase [Oligotropha
            carboxidovorans OM5]
          Length = 1066

 Score =  492 bits (1267), Expect = e-136,   Method: Composition-based stats.
 Identities = 221/807 (27%), Positives = 361/807 (44%), Gaps = 55/807 (6%)

Query: 42   ENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEE 101
            + P  DS      +     + S    L  +           +RFTW +DA G     S+E
Sbjct: 267  DTPMDDSAAPETSSGMAPAAPSELLPLPDDPAVR---RRHPLRFTWAMDAEGRFSLGSDE 323

Query: 102  LPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPI 161
                IG         +  +VS  L +DP +H+   +  + T+ G    WP++G +  +P+
Sbjct: 324  FTHLIGVQTTAAFSRKWSEVSTELTLDPEDHVAQAVATRATFSGILLHWPVDGVSGRLPV 383

Query: 162  DLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEK 221
            +L+ LP+Y R+R F+G+RGFGI           A  +R D  F           + E+ +
Sbjct: 384  ELSGLPVYGRDRTFAGYRGFGICRDLDGLT-RLAAQRRRDALFGSTPATAPASQTHEQPE 442

Query: 222  YDIF---------SQQSPPPHLRMKNKVSSLTEYY-------AHKDDVLKTEKYPLLTSE 265
                             PP H      + ++           A+ D            + 
Sbjct: 443  AQEPVAIAEMHEPPAHEPPTHEAEPETIEAIEAPANVVPFRPANDDGPTLALTPGETNAF 502

Query: 266  ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH-------RNHPSLSAYFDEG 318
            +    +        + Q     +     +++ E     +            + +      
Sbjct: 503  QELARQLSARLESEVEQRRSALHAEEADDSTAEQPHDDAIFDTEEDATPDEASTQLRRPA 562

Query: 319  ENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
             +     +D+ P+   +Y    L +AN +FL  T Y S+  +   GGL  L   P ++D 
Sbjct: 563  PSQNTSLIDRLPLGVLIYRADRLLHANATFLAATGYASLAALNKDGGLGALYVGPGVADV 622

Query: 379  NAIKPVM----LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
            +A            +       +ARLHTI W+ E++LA+   P     Q     P    E
Sbjct: 623  SAADDGTPIKVSTLAMGEDNGRNARLHTIDWDGESALALILSPDSPQPQAEHAAPVAIAE 682

Query: 435  PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
            P          +  IE  +L +ILE T++G+ + + +G +++ NR+   LF     D+  
Sbjct: 683  P------PPPAEARIEADELATILETTAEGVVMFDGDGRVIACNRSAEALFSRDGTDLEG 736

Query: 495  KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSS 552
            +         +   +  YL +I S  +    E  +  LG   +   ++L + + +     
Sbjct: 737  QNLIELFAPESQRAVLDYLEDIKSDAMESLFEQGRDVLGRAPDGGAMALSVTMGRTRPGR 796

Query: 553  -CYSLTMHD----------ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
              Y     D           S  +  +      K+  EK +S K+D LAR+SHE+R P++
Sbjct: 797  ARYFAVFRDKPPPAFTAPVASPLRAAEQA----KRADEKAASAKADLLARLSHEVRAPVS 852

Query: 602  AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
            AIIGF++V+  +RFG LGN RYI+Y   I  SG  V+ I++D+LD+S+IESGK++L F P
Sbjct: 853  AIIGFADVMIEERFGALGNERYIDYMKDIRASGERVISIIDDMLDLSRIESGKLDLDFTP 912

Query: 662  VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
              L+  V + + ++Q  AN +RI+IR+S  + +P I AD  +++QIAL ++  AIH   +
Sbjct: 913  QDLNALVEQCVGMMQPQANRERIIIRSSLTHGLPNIEADTHALRQIALTLIGTAIHLANA 972

Query: 722  GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
            GGQ+I+ST  T   EV LR+RDTG GM + E+  AM PF + P+       G G  L  A
Sbjct: 973  GGQVIVSTALTDLGEVALRIRDTGQGMNDNEIAAAMAPF-RTPSPADEVAAGNGANLSRA 1031

Query: 782  KAMVDANMGKFYIFSTPAKGTLIEIIF 808
            KA+++AN G+F+I S P  GTLIE +F
Sbjct: 1032 KALIEANRGRFHIKSAPNAGTLIEAVF 1058


>gi|299132031|ref|ZP_07025226.1| PAS/PAC sensor signal transduction histidine kinase [Afipia sp.
            1NLS2]
 gi|298592168|gb|EFI52368.1| PAS/PAC sensor signal transduction histidine kinase [Afipia sp.
            1NLS2]
          Length = 1041

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 216/791 (27%), Positives = 349/791 (44%), Gaps = 52/791 (6%)

Query: 49   FEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGN 108
             +    T     +       D             +RFTW +DA G     + E    IG 
Sbjct: 265  PDSPPETS-PAAAPELIPLPDDLAGQR---RRHPLRFTWAMDAEGRFSFGAGEFTHLIGA 320

Query: 109  YAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPI 168
                  G    +V+  L +DP N +   +  ++T+      WP +G    +P++++ LPI
Sbjct: 321  QTTAAFGRLWSEVNAALALDPENRVAHAIATRDTFSNILLQWPADGLAGRLPVEMSGLPI 380

Query: 169  YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228
            + R+  F+G+RGFGI           A  +R D  F          + +E       S +
Sbjct: 381  FGRDHAFAGYRGFGICRDLDGLT-RVAAQRRHDTLFG------SSPAPLETPAPTAASPE 433

Query: 229  SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288
             P P        ++  E    +         P   + + + P        N  Q   +Q 
Sbjct: 434  PPAPEATAPQTETAFGEPAETEGSETPPNVVPFRAANDDARPPVLTPGENNAFQELARQL 493

Query: 289  FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE------------------------ 324
               L++ ++     L      + S+     +++  E                        
Sbjct: 494  SERLEHETERRLSALHEEEQANDSSAAQPHDDMIFESGEDEIEVPPAQLSPVARAPQNTS 553

Query: 325  TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
              D+ P    VY    L YAN +FL  T Y +++ +   GGL  L     ++D +A    
Sbjct: 554  LYDQLPSGVLVYRADRLLYANNAFLAATGYATLNALNKDGGLGALYVGSGVADTDASGEG 613

Query: 385  M----LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
                    S     A  ARLHT+ W  EN+LA+   P     Q    +P           
Sbjct: 614  TPIKVSTVSMGAHQALDARLHTVDWEGENALALILSPPVAPAQTDYAIPVAA-------E 666

Query: 441  RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
             + +    IE  +L +ILE T++G+ + + +G I++ NR+   LFG     +        
Sbjct: 667  PLPRAGDLIESDELATILETTAEGVMMFDSDGGIIACNRSAEALFGRDG--LEGHNLIEL 724

Query: 501  LEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSS-CYSLT 557
                +   +  YL  I S  ++   E  +  LG   +   ++L + + +       Y   
Sbjct: 725  FAPESQRAVLDYLEGIKSGAMQGLFEQGRDVLGRAPDGGAMALSVTMGRTRPDRPRYFAV 784

Query: 558  MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
              D              K+  E+ ++ K+D LAR+SHE+R P+ AIIGF++V+  +RFG 
Sbjct: 785  FRDKPPAAPALRAPDQDKRADERAANAKADLLARLSHEVRAPVNAIIGFADVMIEERFGA 844

Query: 618  LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
            LGN RY +Y   I  SG  V+ I++D+LD+S+IESGK++L F    L+  V + + ++Q 
Sbjct: 845  LGNERYADYMKDIRASGERVISIIDDMLDLSRIESGKLDLEFASQDLNALVEQCVGVMQP 904

Query: 678  YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737
             AN +RI+IR+S  + +P I AD R+++QIAL ++  AI    +GGQ+I+ST      EV
Sbjct: 905  QANRERIIIRSSLTHGLPNIQADARALRQIALTLIGCAIRLANAGGQVIVSTALNDLGEV 964

Query: 738  ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
             LR+RDTG GM + E+  AM PF + P+       G G  L LAKA+V+AN G+F++ S+
Sbjct: 965  ALRIRDTGHGMNDNEIAAAMAPF-RTPSPTDEVAAGNGANLSLAKALVEANRGRFHLRSS 1023

Query: 798  PAKGTLIEIIF 808
            P  GTLIE++F
Sbjct: 1024 PNTGTLIEVVF 1034


>gi|327192167|gb|EGE59140.1| putative two-component sensor histidine kinase protein [Rhizobium
            etli CNPAF512]
          Length = 1262

 Score =  484 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 238/625 (38%), Positives = 350/625 (56%), Gaps = 12/625 (1%)

Query: 189  VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA 248
                      R   K       +K   +    +    ++ +        + +   T    
Sbjct: 639  ALTAAEQANFREIAKRLEAFGARKDEPAAPAPRGAGATETAAFEESVKPDTIKDETPLAD 698

Query: 249  HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
              D+    E  P     E++   +            ++         +    E L+    
Sbjct: 699  TADNASAEEMAPQEAIFENA--AEVQREEAEGPAAIEEDEATEGLEETVSQIEVLTSFIP 756

Query: 309  PSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
            P         + L+  TVD+ P+   ++    L +ANP F+ LT Y S+D +   GG+  
Sbjct: 757  PR----VKMTDGLSAGTVDQLPVAVLIHVGDALLHANPEFMRLTGYSSLDALRDVGGIEA 812

Query: 369  LLDAPKLSDNNA-IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
            LL    L +N A    +ML ++D T    +ARL +++W   N+L +  +P     +    
Sbjct: 813  LLQRRDLEENAAGSGTMMLVKADDTLTPVTARLQSVRWEDANALMLALMPVAGKEEARTE 872

Query: 428  MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
              ++   PE +  ++   K+++EV +L SILE  +DG+ +I  EG I S NR+ S LF Y
Sbjct: 873  AGRSEARPERMVEKVA--KLQVEVEELRSILETATDGVVVIGIEGDIRSMNRSASALFNY 930

Query: 488  PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIII 545
              ++   KPF +     +   +  YL  +    +   L   +  +G       + L + +
Sbjct: 931  DEQETRGKPFVMLFAHESQKAVLDYLHGLSGHGVASVLNDGREVIGREAAGGFVPLFMTM 990

Query: 546  KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
             +L  S+ Y   + DI++WK+ +++L +AK  AE  ++HK+DFLARVSHEIRTPL AIIG
Sbjct: 991  GRLTSSNGYCAVIRDITQWKRTEDELRNAKGAAETANAHKTDFLARVSHEIRTPLNAIIG 1050

Query: 606  FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
            FS+++  +RFGP+G+PRYIEYAN I RSG  VLDIVNDLLDISKIE+G+M+L F  V L+
Sbjct: 1051 FSDMMAGERFGPIGHPRYIEYANDIGRSGRHVLDIVNDLLDISKIEAGEMDLDFAAVGLN 1110

Query: 666  EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725
            EAVSEA++LVQ  AN +R++IRT+ ++ +P ++ADLRS+KQIALNILSNAI FTPSGGQI
Sbjct: 1111 EAVSEAVALVQPQANGQRVIIRTALSHAVPDVVADLRSIKQIALNILSNAIRFTPSGGQI 1170

Query: 726  IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE-GTGLGLPLAKAM 784
            ++ST++ +N  V+LRVRDTGVGMT  EL++AMKPF Q+ ++Q      GTGLGLPL KAM
Sbjct: 1171 VVSTSYEANGSVVLRVRDTGVGMTRSELDQAMKPFRQVSSTQSRHRGDGTGLGLPLTKAM 1230

Query: 785  VDANMGKFYIFSTPAKGTLIEIIFP 809
            VDAN   F I S P +GTL+EI FP
Sbjct: 1231 VDANRATFSINSAPNEGTLVEITFP 1255



 Score =  170 bits (431), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 91/463 (19%), Positives = 154/463 (33%), Gaps = 25/463 (5%)

Query: 36  TEKSKK-ENPCHDSFE-QSNFTDQNQESVSNTNYLDSEN---TFVFDPIPRTVRFTWNID 90
            E +   + P  ++    S         +S+     +      FVF P  R  RF W ID
Sbjct: 362 AEPAAASQTPVEEAPAMASGAPAVAAPLISDAPPAPAPAAQPGFVFRPNSRATRFVWKID 421

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150
           A G   E+S E  + +G +A  +IG    D++ + ++DP+  + + L R++TW GKT LW
Sbjct: 422 AEGRFNEVSHEFAEAVGPHASAIIGSAFSDIAALFNLDPDGKLSEALARRDTWSGKTILW 481

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
           P+EGT+L VP+DLAALP Y+RNR+F GFRGFG+V ++    DP ALG  L +        
Sbjct: 482 PVEGTSLVVPVDLAALPTYTRNRDFDGFRGFGVVRLSDAQEDPLALGLTLGQDGVGHDAA 541

Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270
             G  +    +     +              +  +           E  P   + E +  
Sbjct: 542 SLGPIAEPAAEPAHDVEARSEAAAAEPPVADANGDEALAAAAPQAEETAPAAETGEETTF 601

Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330
           E+             +             F     + H + +A     +    E   +  
Sbjct: 602 ERPARDNAADEPPALRIVETP-----NRRFTDKVVQLHSTGAALTAAEQANFREIAKRLE 656

Query: 331 IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390
              F           P     T+  + ++      +         +DN + + +      
Sbjct: 657 A--FGARKDEPAAPAPRGAGATETAAFEESVKPDTIKDETPLADTADNASAEEMA----- 709

Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450
               A       +Q       A                    +             +   
Sbjct: 710 -PQEAIFENAAEVQREEAEGPAAIEEDEATEGLEETVSQIEVLTSFIPPRVKMTDGLSA- 767

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
                  ++     + I   +  +L  N    +L GY   D L
Sbjct: 768 -----GTVDQLPVAVLIHVGD-ALLHANPEFMRLTGYSSLDAL 804


>gi|114706370|ref|ZP_01439272.1| putative sensor histidine kinase protein [Fulvimarina pelagi
            HTCC2506]
 gi|114538231|gb|EAU41353.1| putative sensor histidine kinase protein [Fulvimarina pelagi
            HTCC2506]
          Length = 1146

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 236/817 (28%), Positives = 374/817 (45%), Gaps = 60/817 (7%)

Query: 44   PCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELP 103
                  ++S           +         FV D   R+ RF W +D  G    +S E  
Sbjct: 332  ETAFLPDESRTVSSPAAGEPDFGSSKD---FVPDFSERSKRFVWRLDQEGRFHALSPEFA 388

Query: 104  KTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDL 163
              +G  A  +IG+   D+S+ L +DP+  I  L+ R++TW  ++ LWP+E ++  VPIDL
Sbjct: 389  SVVGPRAADVIGIAFADLSEALDLDPSGEIASLIDRRDTWSDRSVLWPVEASDKRVPIDL 448

Query: 164  AALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYD 223
            AALP+YSR+R F GFRGFG++     + DP   GKRL    +    + +   S   E  D
Sbjct: 449  AALPVYSRDRSFDGFRGFGVLRPAEAETDPENWGKRLANGETMHEIVAEAVRSRPVEVAD 508

Query: 224  IFSQQS-------------PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270
              ++                        ++  L +    +D  L  E+     +   +L 
Sbjct: 509  FGTEDDDEDANTLEQITDDASGLPDETEQIVRLADRRLRRDAPLSDEEAAAFRTIGVALS 568

Query: 271  EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP------SLSAYFDEGENLTPE 324
              E    ++    T K+           S   +  + H       SLS    +G +L   
Sbjct: 569  GSERGGNLDAAIQTAKEKIALFGGPPLLSSANIHRKRHAGDTEAGSLSEPQRQGSDLAIA 628

Query: 325  T-----VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
            T       + P+P  V S  +  + N  F  LT Y+    +  AGGL  L D  +  +  
Sbjct: 629  TDLAAYYGRLPVPILVQSGDHTVFTNEEFADLTGYRDATALSAAGGLDRLFDESERGEC- 687

Query: 380  AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
                V L R++   I   AR+  I     + L ++F    +            +  ED  
Sbjct: 688  ----VRLRRANGKTIDVRARMQRITMRGRSFLVISFFATPRMTVSDLQPKGAPLITEDKA 743

Query: 440  TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG------------- 486
              +     E  + QL + +EA  + + +++ EG + + N    +LF              
Sbjct: 744  DDVEALDAEARLAQLMASVEAAGEAVLVLDHEGRVEAANERGIELFASAVRPDQDHVATK 803

Query: 487  ------YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL--DLRQTLEKITLGSTKEEKL 538
                   P   +    FT   E  + S+    + E      + R   +        + + 
Sbjct: 804  MDDDGAAPSTPLQGFLFTKLFEGESRSLARELIRETSLGLREDRAGGDADLAVRIADGEP 863

Query: 539  LSLRIIIKKLPFSSCYSLTMHDISE------WKQEKNKLSHAKKIAEKESSHKSDFLARV 592
                 + + L  +  + + M D+ E      +  E   +  A+  AE +S  K+  LA V
Sbjct: 864  RKFTTVAEPLE-TGGWCVVMRDLGEPGVRGVFPDEDEDVRTAQHRAEADSVRKTQLLASV 922

Query: 593  SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
            SHEIRTP+TA++GF++ I+ + FGP+GNPRY++Y   I RS   VLD+VNDLL++SK E+
Sbjct: 923  SHEIRTPMTAVLGFADAIEGEAFGPIGNPRYLDYIADIKRSSRHVLDLVNDLLELSKAEA 982

Query: 653  GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712
            G + L F  V+L++ V E +S++Q  A   RI++R++   ++P+++AD RS++QI  N++
Sbjct: 983  GGLELDFRTVALNQVVGEVVSMMQPVAGGARIVLRSNLPPSVPQVVADERSIRQIMTNLV 1042

Query: 713  SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
             NAI+ TP+GGQII+S+ +  +  V LR RD GVGM   ELE A +PFG+       R  
Sbjct: 1043 QNAINSTPAGGQIIVSSQYREDGSVTLRCRDNGVGMNEKELEFAKQPFGRPKLDGGPRRR 1102

Query: 773  GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            GTGLGLPLA AM +AN     I S P  GT++E+ FP
Sbjct: 1103 GTGLGLPLAYAMAEANGAAIAIDSAPQNGTMVELRFP 1139


>gi|209547989|ref|YP_002279906.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium
            leguminosarum bv. trifolii WSM2304]
 gi|209533745|gb|ACI53680.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium
            leguminosarum bv. trifolii WSM2304]
          Length = 1296

 Score =  482 bits (1240), Expect = e-133,   Method: Composition-based stats.
 Identities = 241/657 (36%), Positives = 367/657 (55%), Gaps = 13/657 (1%)

Query: 161  IDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKE 220
            + ++  P    + +       G         + R + KRL+  F    +   G    +  
Sbjct: 638  LRISETPNRRFSDKIVQLHNSGAALTAAEQANFREIAKRLEA-FGASKDEPAGPGRSDPA 696

Query: 221  KYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY--PLLTSEESSLPEQEDFHTI 278
              +  S +       +K +     +  A   + +  ++         +     +ED  ++
Sbjct: 697  ATETASFEEASGAEDLKAETPIADKAEAPSLEEIAPQEAIFENAADAQRDDDAREDDASV 756

Query: 279  NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH 338
                   +         +    E L+    P         + L+  TVD+ P+   ++  
Sbjct: 757  EATDDIDEDEATEGLEETVSQIEVLTSFIPPR----VKMTDGLSLGTVDQLPVAVLIHVG 812

Query: 339  GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA-IKPVMLYRSDRTCIAAS 397
              L +ANP F+ LT Y S+D +   GG+  LL   +L +  A    +ML ++D + +  +
Sbjct: 813  DALLHANPEFMRLTGYTSLDALREVGGIEALLQRRELEEKAAGSGTMMLVKADDSLVPVT 872

Query: 398  ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK--RKMEIEVMQLC 455
            ARL +++W   N+L +  +P E   +   +  ++    E    R+ +   K+++EV +L 
Sbjct: 873  ARLQSVRWEDANALMLALMPVEGKEEGRSDAGRSEGRTEARPERMVEKVAKLQVEVEELR 932

Query: 456  SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
            SILE  +DG+ +I  EG I S NR+ S LF Y  ++   KPF +     +   +  YL  
Sbjct: 933  SILETATDGVVVIGTEGDIRSMNRSASALFNYDEQETRGKPFVMLFAHESQKAVLDYLHG 992

Query: 516  ILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH 573
            +    +   L   +  +G       + L + + +L  S+ Y   + DI++WK+ +++L +
Sbjct: 993  LSGHGVASVLNDGREVIGREAAGGFVPLFMTMGQLTSSNGYCAVIRDITQWKRTEDELRN 1052

Query: 574  AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
            AK  AE  ++HK+DFLARVSHEIRTPL AIIGFS+++  +RFGP+G+PRYIEYAN I RS
Sbjct: 1053 AKGAAETANAHKTDFLARVSHEIRTPLNAIIGFSDMMAGERFGPIGHPRYIEYANDIGRS 1112

Query: 634  GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693
            G  VLDIVNDLLDISKIE+G+M+L F  V L+EAVSEA++LVQ  AN +R++IRT+ ++ 
Sbjct: 1113 GRHVLDIVNDLLDISKIEAGEMDLDFAAVGLNEAVSEAVALVQPQANGQRVIIRTALSHA 1172

Query: 694  IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753
            +P ++ADLRS+KQIALNILSNAI FTPSGGQI++ST++ +N  V+LRVRDTG+GMT  EL
Sbjct: 1173 VPEVVADLRSIKQIALNILSNAIRFTPSGGQIVVSTSYEANGSVVLRVRDTGIGMTRSEL 1232

Query: 754  EKAMKPFGQIPNSQQIRGE-GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            ++AMKPF Q+ ++Q      GTGLGLPL KAMVDAN   F I S P +GTL+EI FP
Sbjct: 1233 DQAMKPFRQVSSTQSRHRGDGTGLGLPLTKAMVDANRAVFSINSAPNEGTLVEITFP 1289



 Score =  180 bits (458), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 103/550 (18%), Positives = 188/550 (34%), Gaps = 58/550 (10%)

Query: 39  SKKENPCHDSF---EQSNFTDQNQESVSNTNYLDSEN--------TFVFDPIPRTVRFTW 87
           +  E P        + +      +  V+     D+           F+F P  R  RF W
Sbjct: 355 TTAEPPVETGETPVDAAPEAVHEEPVVAPPMVADASPAPELVAAPGFIFRPNSRATRFVW 414

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
            IDA G   E+S E  + +G +A ++IG    DV+ + ++D +  + + L R++TW GKT
Sbjct: 415 KIDAEGRFNEVSHEFAEAVGPHASEIIGSAFGDVAALFNLDSDGKLAEALARRDTWSGKT 474

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
            LWP+EGT+L VP+DLAALP Y+RNR+F GFRGFG+V ++    DP ALG  L       
Sbjct: 475 ILWPVEGTSLVVPVDLAALPTYTRNRDFDGFRGFGVVRLSDAQEDPLALGLTLGPDGV-- 532

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
                GH +           ++       + +  S        +D       P   +E  
Sbjct: 533 -----GHDAASLGPVTETVAEAALEVPAAQEEAPSEPALTDEVEDKALAASEPQPETEPE 587

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
            +  ++       ++   +Q      ++S ES +  +      +S               
Sbjct: 588 EITAEQASGERAADEPPFQQSASETADDSAESGDISAVDPAAEMSNEPPALRISETPNRR 647

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
                  +++ G    A          K ++    +         P  SD  A +     
Sbjct: 648 FSDKIVQLHNSGAALTAAEQANFREIAKRLEAFGASKDEPA---GPGRSDPAATETASFE 704

Query: 388 RSDR-------TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
            +         T IA  A   +++               + +        +    +D+D 
Sbjct: 705 EASGAEDLKAETPIADKAEAPSLEEIAPQEAIFENAADAQRDDDAREDDASVEATDDIDE 764

Query: 441 RINKRKMEIEVMQLCSI------------------LEATSDGIAIINREGIILSTNRAVS 482
                 +E  V Q+  +                  ++     + I   +  +L  N    
Sbjct: 765 DEATEGLEETVSQIEVLTSFIPPRVKMTDGLSLGTVDQLPVAVLIHVGD-ALLHANPEFM 823

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
           +L GY   D L                   L +   L+ +       +    ++ L+ + 
Sbjct: 824 RLTGYTSLDAL-----------REVGGIEALLQRRELEEKAAGSGTMMLVKADDSLVPVT 872

Query: 543 IIIKKLPFSS 552
             ++ + +  
Sbjct: 873 ARLQSVRWED 882


>gi|241203167|ref|YP_002974263.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium
            leguminosarum bv. trifolii WSM1325]
 gi|240857057|gb|ACS54724.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium
            leguminosarum bv. trifolii WSM1325]
          Length = 1276

 Score =  482 bits (1240), Expect = e-133,   Method: Composition-based stats.
 Identities = 245/656 (37%), Positives = 363/656 (55%), Gaps = 16/656 (2%)

Query: 161  IDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKE 220
            + ++  P    + +       G         + R + KRL+  F    +     + +E  
Sbjct: 623  LRISETPNRRFSDKIVQLHNTGAGLTAAEQANFREIAKRLEA-FGANKDEPAAPAPMEPN 681

Query: 221  KYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL-PEQEDFHTIN 279
              +  +               + T      D     E  P     E+++  E+ED     
Sbjct: 682  ATETAAFNEASG----PEAFGAETPTADQADIPSLEEIAPQEAIFENAVEAEREDDGATE 737

Query: 280  LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG 339
                  +         +    E L+    P         + L+  TVD+ P+   ++   
Sbjct: 738  EPAVIVEDEATEGLEETASQIEVLTSFIPPR----IKMTDGLSVGTVDQLPVAVLIHIGD 793

Query: 340  NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA-IKPVMLYRSDRTCIAASA 398
             L +ANP F+ LT Y S+D +   GG+  LL   +L +  A    +ML ++D T    +A
Sbjct: 794  ALIHANPEFMRLTGYGSLDALREVGGIEGLLQRRELEEKAAGSGTMMLVKADDTLAPVTA 853

Query: 399  RLHTIQWNRENSLAMTFIPFEK-ANQFPENMPQNGIEPEDVDTRINK-RKMEIEVMQLCS 456
            RL +++W   N+L +  +P E   +   +    +G   +  +  + K  K+++EV +L S
Sbjct: 854  RLQSVRWEDANALMLALMPVEGKEDGRGDANRFDGRSEDRPERMVEKVAKLQVEVEELRS 913

Query: 457  ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
            ILE  +DG+ +I  EG I S NR+ S LF Y  ++   KPF +     +   +  YL  +
Sbjct: 914  ILETATDGVVVIGTEGDIRSMNRSASALFNYDEQETRGKPFVMLFAHESQKAVIDYLNGL 973

Query: 517  LSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA 574
                +   L   +  +G       + L + + +L  S+ Y   + DI++WK+ +++L +A
Sbjct: 974  SGHGVASVLNDGREVIGREAAGGFVPLFMTMGQLTSSNGYCAVIRDITQWKRTEDELRNA 1033

Query: 575  KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
            K  AE  ++HK+DFLARVSHEIRTPL AIIGFS+++  +RFGP+G+PRYIEYAN I RSG
Sbjct: 1034 KGAAETANAHKTDFLARVSHEIRTPLNAIIGFSDMMAGERFGPIGHPRYIEYANDIGRSG 1093

Query: 635  NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
              VLDIVNDLLDISKIE+G+M+L F  V L+EAVSEA++LVQ  AN +R++IRT+ +  +
Sbjct: 1094 RHVLDIVNDLLDISKIEAGEMDLDFAAVGLNEAVSEAVALVQPQANGQRVIIRTALSQAV 1153

Query: 695  PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELE 754
            P ++ADLRS+KQIALNILSNAI FTPSGGQI++ST++ +N  V+LRVRDTG+GMT  EL+
Sbjct: 1154 PEVVADLRSIKQIALNILSNAIRFTPSGGQIVVSTSYEANGSVVLRVRDTGIGMTRSELD 1213

Query: 755  KAMKPFGQIPNSQQIRGE-GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            +AMKPF Q+ ++Q      GTGLGLPL KAMVDAN   F I S P +GTL+EI FP
Sbjct: 1214 QAMKPFRQVSSTQSRHRGDGTGLGLPLTKAMVDANRATFTINSAPNEGTLVEITFP 1269



 Score =  184 bits (467), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 99/474 (20%), Positives = 170/474 (35%), Gaps = 39/474 (8%)

Query: 35  ETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGY 94
           E  ++  E+      E++         V     L++E+ FVF P  R  RF W IDA G 
Sbjct: 353 EASETPIEDAPEAVHEETAIATPVVPDVPPAPQLEAESGFVFRPNSRATRFVWKIDAEGR 412

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEG 154
             E+S E    +G +A  +IG    DV+ + ++DP+  + + L R++TW GKT LWP+EG
Sbjct: 413 FNEVSHEFAAAVGPHASDIIGSAFGDVAALFNLDPDGKLSEALARRDTWSGKTILWPVEG 472

Query: 155 TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214
           T+L VP+DLAALP Y+RNR+F GFRGFG+V ++    DP ALG  L        +     
Sbjct: 473 TSLVVPVDLAALPTYTRNRDFDGFRGFGVVRLSDAQEDPLALGLTLG------PDGIGHD 526

Query: 215 SSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQED 274
           ++      +  ++ +      ++  +   +     +D  L   +     + E    EQ  
Sbjct: 527 AASLGPPAETIAEVAHEAETVLEEPLIDPSPTQEVEDQALTASEPQAEPAPEEIATEQAA 586

Query: 275 FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF 334
                 +   K +      + S         +  P+L          + +          
Sbjct: 587 EIPAQESAAEKAEGSADAGDISAAEPVAELPQEPPALRISETPNRRFSDKI-------VQ 639

Query: 335 VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394
           +++ G    A          K ++             AP   + NA +      +     
Sbjct: 640 LHNTGAGLTAAEQANFREIAKRLEAFGANKDEPA---APAPMEPNATETAAFNEASGPE- 695

Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE---DVDTRINKRKMEIEV 451
           A  A   T       SL              E   ++    E    +        +E   
Sbjct: 696 AFGAETPTADQADIPSLEEIAPQEAIFENAVEAEREDDGATEEPAVIVEDEATEGLEETA 755

Query: 452 MQLCSI------------------LEATSDGIAIINREGIILSTNRAVSKLFGY 487
            Q+  +                  ++     + I   +  ++  N    +L GY
Sbjct: 756 SQIEVLTSFIPPRIKMTDGLSVGTVDQLPVAVLIHIGD-ALIHANPEFMRLTGY 808



 Score = 41.6 bits (96), Expect = 0.56,   Method: Composition-based stats.
 Identities = 54/493 (10%), Positives = 122/493 (24%), Gaps = 58/493 (11%)

Query: 94  YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIE 153
            L   +    +  G+ A   +  +  D +DI           L    ++      +  + 
Sbjct: 36  RLLWANGAGAELFGHSAVYDLLDQGVDRADITFRQLETAARQLTDIGDSRS---LMIRVA 92

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
                  +  AA  I     E        I+    V   P A G    +    L +    
Sbjct: 93  KGFQRAQVQAAAELIRLSQGE------QAILFSVPVSAKPLAAGASAAQMLQGLDD-PDT 145

Query: 214 HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT--EYYAHKDDVLKTEKYPLLTSEESSLPE 271
           H +V     ++ +       L +  + +        AH D ++K        +  +++ +
Sbjct: 146 HMAVIGANGEVIAASPGFASLGISEQTAKTLINLAGAHPDRLVKRPVATGRGNLPAAVGK 205

Query: 272 QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI 331
             D   +NL    +         ++       +    P  +   +E         D    
Sbjct: 206 LSDDPALNLLFAVETAVGHLDPVDAPALAPVDAPALDPVDAPAQEESAPPMEVLQD---E 262

Query: 332 PFFVYSHGNLFYA-----------------NPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
           P        +  A                 N     +    + + I+         D  +
Sbjct: 263 PVAATGFTEIIDAVSGIEEVEETLEEITGENEQPAEIAVASADEAIDGM-------DPAE 315

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
            ++  +   V    +D         + +I    E  +  +  P E A +           
Sbjct: 316 DAEPKSDDGVTDSSADEPAAVIEDDVTSIAETAEPPVEASETPIEDAPEAVHEETAIATP 375

Query: 435 PEDVDTRINKRKMEI--------EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
                    + + E            +           +  I+ EG     +   +   G
Sbjct: 376 VVPDVPPAPQLEAESGFVFRPNSRATRF----------VWKIDAEGRFNEVSHEFAAAVG 425

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
               DI+   F            +  L+E L+     + + I         ++ + +   
Sbjct: 426 PHASDIIGSAFGDVAALFNLDP-DGKLSEALARRDTWSGKTILWPVEGTSLVVPVDLAAL 484

Query: 547 KLPFSSCYSLTMH 559
                +       
Sbjct: 485 PTYTRNRDFDGFR 497


>gi|190890429|ref|YP_001976971.1| two-component sensor histidine kinase [Rhizobium etli CIAT 652]
 gi|190695708|gb|ACE89793.1| probable two-component sensor histidine kinase protein [Rhizobium
            etli CIAT 652]
          Length = 1257

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 234/620 (37%), Positives = 348/620 (56%), Gaps = 9/620 (1%)

Query: 195  ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV-SSLTEYYAHKDDV 253
            AL       F  + +  +   +  +E      + +       +  V     +      D 
Sbjct: 635  ALTAAEQANFREIAKRLEAFGARNEEPAAPAPRDAAAETAAFEESVKPDTIKDETPLADT 694

Query: 254  LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
                    +  +E+      +            +     +   +   +     +      
Sbjct: 695  ADNASAEEMAPQEAIFENAAEAVREEAEGPAAIEEDEATEGLEETVSQIEVLTSFIPPR- 753

Query: 314  YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
                 + L+  TVD+ P+   ++    L +ANP F+ LT Y S+D +   GG+  LL   
Sbjct: 754  -VKMTDGLSAGTVDQLPVAVLIHVGDALMHANPEFMRLTGYSSLDALRDVGGIEALLQRR 812

Query: 374  KLSDNNA-IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
             L +N A    +ML ++D T    +ARL +++W   N+L +  +P     +      ++ 
Sbjct: 813  DLEENAAGSGTMMLVKADDTLTPVTARLQSVRWEDANALMLALMPVAGKEEARTEAGRSE 872

Query: 433  IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
              PE +  ++   K+++EV +L SILE  +DG+ +I  EG I S NR+ S LF Y  ++ 
Sbjct: 873  ARPERMVEKVA--KLQVEVEELRSILETATDGVVVIGIEGDIRSMNRSASALFNYDEQET 930

Query: 493  LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPF 550
              KPF +     +   +  YL  +    +   L   +  +G       + L + + +L  
Sbjct: 931  RGKPFVMLFAHESQKAVLDYLHGLSGHGVASVLNDGREVIGREAAGGFVPLFMTMGRLTS 990

Query: 551  SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
            S+ Y   + DI++WK+ +++L +AK  AE  ++HK+DFLARVSHEIRTPL AIIGFS+++
Sbjct: 991  SNGYCAVIRDITQWKRTEDELRNAKGAAETANAHKTDFLARVSHEIRTPLNAIIGFSDMM 1050

Query: 611  KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
              +RFGP+G+PRYIEYAN I RSG  VLDIVNDLLDISKIE+G+M+L F  V L+EAVSE
Sbjct: 1051 AGERFGPIGHPRYIEYANDIGRSGRHVLDIVNDLLDISKIEAGEMDLDFAAVGLNEAVSE 1110

Query: 671  AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
            A++LVQ  AN +R++IRT+ ++ +P ++ADLRS+KQIALNILSNAI FTPSGGQI++ST+
Sbjct: 1111 AVALVQPQANGQRVIIRTALSHAVPDVVADLRSIKQIALNILSNAIRFTPSGGQIVVSTS 1170

Query: 731  HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE-GTGLGLPLAKAMVDANM 789
            + +N  V+LRVRDTGVGMT  EL++AMKPF Q+ ++Q      GTGLGLPL KAMVDAN 
Sbjct: 1171 YEANGSVVLRVRDTGVGMTRSELDQAMKPFRQVSSTQSRHRGDGTGLGLPLTKAMVDANR 1230

Query: 790  GKFYIFSTPAKGTLIEIIFP 809
              F I S P +GTL+EI FP
Sbjct: 1231 ATFSINSAPNEGTLVEITFP 1250



 Score =  164 bits (414), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 73/305 (23%), Positives = 123/305 (40%), Gaps = 6/305 (1%)

Query: 26  SKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESV-----SNTNYLDSENTFVFDPIP 80
           + +  D   ET ++ +      +  +         +      +      ++  FVF P  
Sbjct: 348 AARSADESAETNETAEPAEASQTPVEEAPAMAAAAAPLISEPAPAPAPAAQPGFVFRPNS 407

Query: 81  RTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ 140
           R  RF W IDA G   E+S E  + +G +A  +IG    D++ + ++DP+  + ++L R+
Sbjct: 408 RATRFVWKIDAEGRFNEVSHEFAEAVGPHASAIIGSAFADIASLFNLDPDGKLSEVLARR 467

Query: 141 NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
           +TW GKT LWP+EGT+L VP+DLAALP Y+RNR+F GFRGFG+V ++    DP ALG  L
Sbjct: 468 DTWSGKTILWPVEGTSLVVPVDLAALPTYTRNRDFDGFRGFGVVRLSDAQEDPLALGLTL 527

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
             +    H+        E         ++       +  V+      A      + E+  
Sbjct: 528 -GQDGVGHDAASLGPIAEPAAEPAQDVEATSEAAAAEPPVADANGDEAPTAAAPQAEETA 586

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
                      +        ++    +   T      +    L        +A       
Sbjct: 587 PAAETGEETTFETPARDNAADEPPALRIVETPNRRFTDKVVQLHSTGAALTAAEQANFRE 646

Query: 321 LTPET 325
           +    
Sbjct: 647 IAKRL 651


>gi|86356371|ref|YP_468263.1| putative two-component sensor histidine kinase protein [Rhizobium
            etli CFN 42]
 gi|86280473|gb|ABC89536.1| putative two-component sensor histidine kinase protein [Rhizobium
            etli CFN 42]
          Length = 1266

 Score =  480 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 240/648 (37%), Positives = 356/648 (54%), Gaps = 17/648 (2%)

Query: 166  LPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF 225
             P      +       G         + R + +RL+          +             
Sbjct: 625  TPSRRSTDKVVQLHSTGAALTAAEQANFREIARRLE------AFGARREEPDAPPTGTTA 678

Query: 226  SQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTK 285
            ++ +P         ++  T      D     E  P     E+++ +              
Sbjct: 679  TEAAPFEERAAPEAITGETPAADTADAASVEETAPQEAIFENAV-DPLREDAAEETGAIA 737

Query: 286  KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYAN 345
            +         +    E L+    P         + L+  TVD+ P+   ++    L +AN
Sbjct: 738  EDEATEGLEETVSQIEVLTSFIPPR----VKMIDGLSAGTVDQLPVAVLIHVGDALIHAN 793

Query: 346  PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA-IKPVMLYRSDRTCIAASARLHTIQ 404
            P F+ LT Y S+D +   GG+  LL   +L +  A    +ML ++D T    +ARL +++
Sbjct: 794  PEFMRLTGYHSLDALREVGGIEALLQRRELEEKAAGSGTMMLVKADDTLTPVTARLQSVR 853

Query: 405  WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
            W   N+L +  +P E       +  ++   PE +  ++   K+++EV +L SILE  +DG
Sbjct: 854  WEDANALMLALMPVEGKEDGRGDSNRSEARPERMVEKVA--KLQVEVEELRSILETATDG 911

Query: 465  IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
            + +I  EG I S NR+ S LF Y  ++   KPF +     +   +  YL  +    +   
Sbjct: 912  VVVIGTEGDIRSMNRSASALFNYDEQETRGKPFVMLFAHESQKAVLDYLNGLAGHGVASV 971

Query: 525  LE--KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES 582
            L   +  +G       + L + + +L  S+ Y   + DI++WK+ +++L +AK  AE  +
Sbjct: 972  LNDGREVIGREAGGGFVPLFMTMGRLTSSNGYCAVIRDITQWKRTEDELRNAKGAAETAN 1031

Query: 583  SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
            +HK+DFLARVSHEIRTPL AIIGFS+++  +RFGP+G+PRYIEYAN I RSG  VLDIVN
Sbjct: 1032 AHKTDFLARVSHEIRTPLNAIIGFSDMMAGERFGPIGHPRYIEYANDIGRSGRHVLDIVN 1091

Query: 643  DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702
            DLLDISKIE+G+M+L F  V L+EAVSEA++LVQ  AN +R++IRT+ ++++P ++ADLR
Sbjct: 1092 DLLDISKIEAGEMDLDFAAVGLNEAVSEAVALVQPQANGQRVIIRTALSHSVPEVVADLR 1151

Query: 703  SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
            S+KQIALNILSNAI FTPSGGQI++ST++ +N  V+LRVRDTG+GMT  EL+ AMKPF Q
Sbjct: 1152 SIKQIALNILSNAIRFTPSGGQIVVSTSYEANGSVVLRVRDTGIGMTRAELDHAMKPFRQ 1211

Query: 763  IPNSQQIRGE-GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            + ++Q      GTGLGLPL KAMVDAN   F I S P +GTL+EI FP
Sbjct: 1212 VSSTQSRHRGDGTGLGLPLTKAMVDANRAIFSINSAPNEGTLVEITFP 1259



 Score =  175 bits (443), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 93/515 (18%), Positives = 164/515 (31%), Gaps = 31/515 (6%)

Query: 43  NPCHDSFEQSNFTDQNQESVSNTN-YLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEE 101
           +   D+  +         S + T   L  E  FVF P  R  RF W IDA G   E+S E
Sbjct: 368 DEAPDAVREEPAVAATAASDAPTAPSLAPEPGFVFRPNSRATRFVWKIDAEGRFNEVSHE 427

Query: 102 LPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPI 161
             + +G +A  +IG    D++ + ++DP+  I + L R++TW GKT LWP+EGT+L VP+
Sbjct: 428 FAEAVGPHASAIIGSAFSDIAALFNLDPDGKISEALARRDTWSGKTILWPVEGTSLVVPV 487

Query: 162 DLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD--KKFSHLHEIKKGHSSVEK 219
           DLAALP Y+RNR+F GFRGFG+V ++    DP ALG  L           +     +V +
Sbjct: 488 DLAALPTYTRNRDFDGFRGFGVVRLSDAQEDPLALGLTLRPNGIGHDAAGLGPAADAVSE 547

Query: 220 EKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ--EDFHT 277
             ++I +     P   +                    E+         S  E+  E    
Sbjct: 548 PAHEIEAAPEAAPAETIAADAIEDHPQIEETPFEATGEEAGFEPPARESAAEEMQESAGE 607

Query: 278 INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS 337
                   +     + +           + H + +A     +    E   +        +
Sbjct: 608 APAADAADEPPALRIVDTPSRRSTDKVVQLHSTGAALTAAEQANFREIARRL------EA 661

Query: 338 HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397
            G       +    T        E       +      +D      V             
Sbjct: 662 FGARREEPDAPPTGTTATEAAPFEERAAPEAITGETPAADTADAASVEETA--PQEAIFE 719

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
             +  ++ +                          +             +          
Sbjct: 720 NAVDPLREDAAEETGAIAEDEATEGLEETVSQIEVLTSFIPPRVKMIDGLSA------GT 773

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
           ++     + I   +  ++  N    +L GY   D L                   L +  
Sbjct: 774 VDQLPVAVLIHVGD-ALIHANPEFMRLTGYHSLDAL-----------REVGGIEALLQRR 821

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
            L+ +       +    ++ L  +   ++ + +  
Sbjct: 822 ELEEKAAGSGTMMLVKADDTLTPVTARLQSVRWED 856


>gi|116250541|ref|YP_766379.1| two-component regulator sensor histidine kinase protein [Rhizobium
            leguminosarum bv. viciae 3841]
 gi|115255189|emb|CAK06263.1| putative two-component regulator sensor histidine kinase protein
            [Rhizobium leguminosarum bv. viciae 3841]
          Length = 1310

 Score =  478 bits (1231), Expect = e-132,   Method: Composition-based stats.
 Identities = 236/633 (37%), Positives = 352/633 (55%), Gaps = 21/633 (3%)

Query: 191  NDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK 250
                A G R ++  +            E    ++   +        + +  +  +     
Sbjct: 678  KRLEAFGTRKEEPAASAPMEPSATVPAEPAVTEMAGFEEASGPEAFEAETPTADDADIPS 737

Query: 251  DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310
               +  ++     + E+   E+ED           +         +    E L+    P 
Sbjct: 738  LKEITPQEAIFENAVEA---EREDDDAAEEPAVIAEDEATEGLEETASQIEVLTSFIPPR 794

Query: 311  LSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
                    + L+  TVD+ P+   ++    L +ANP F+ LT Y S++ +   GG+  LL
Sbjct: 795  ----IKMTDGLSVGTVDQLPVAVLIHIGDALIHANPEFMRLTGYGSLEALREVGGIEALL 850

Query: 371  DAPKLSDNNA-IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA-----NQF 424
               +L +  A    +ML ++D T    +ARL +++W   N+L +  +P E       +  
Sbjct: 851  QRRELEEKAAGSGTMMLVKADDTLAPVTARLQSVRWEDANALMLALMPVEGKEDGRSDAN 910

Query: 425  PENMPQNGIEPEDVDTRINK-----RKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
              +    G      + R  +      K+++EV +L SILE  +DG+ +I  EG I S NR
Sbjct: 911  RTDGRSEGRSEGRSEGRPERMVEKVAKLQVEVEELRSILETATDGVVVIGTEGDIRSMNR 970

Query: 480  AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEK 537
            + S LF Y  ++   KPF +     +   +  YL  +    +   L   +  +G      
Sbjct: 971  SASALFNYDEQETRGKPFVMLFAHESQKAVIDYLNGLSDHGVASVLNDGREVIGREAAGG 1030

Query: 538  LLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
             + L + + +L  S+ Y   + DI++WK+ +++L +AK  AE  ++HK+DFLARVSHEIR
Sbjct: 1031 FVPLFMTMGQLTSSNGYCAVIRDITQWKRTEDELRNAKGAAETANAHKTDFLARVSHEIR 1090

Query: 598  TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
            TPL AIIGFS+++  +RFGP+G+PRYIEYAN I RSG  VLDIVNDLLDISKIE+G+M+L
Sbjct: 1091 TPLNAIIGFSDMMAGERFGPIGHPRYIEYANDIGRSGRHVLDIVNDLLDISKIEAGEMDL 1150

Query: 658  HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
             F  V L+EAVSEA++LVQ  AN +R++IRT+ ++ +P ++ADLRS+KQIALNILSNAI 
Sbjct: 1151 DFAAVGLNEAVSEAVALVQPQANSQRVIIRTALSHAVPEVVADLRSIKQIALNILSNAIR 1210

Query: 718  FTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE-GTGL 776
            FTPSGGQI++ST++ +N  V+LRVRDTG+GMT  EL++AMKPF Q+ ++Q      GTGL
Sbjct: 1211 FTPSGGQIVVSTSYEANGSVVLRVRDTGIGMTRSELDQAMKPFRQVSSTQSRHRGDGTGL 1270

Query: 777  GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            GLPL KAMVDAN   F I S P +GTL+EI FP
Sbjct: 1271 GLPLTKAMVDANRATFSINSAPNEGTLVEITFP 1303



 Score =  189 bits (480), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 99/482 (20%), Positives = 169/482 (35%), Gaps = 42/482 (8%)

Query: 41  KENPCHDSFE---QSNFTDQNQES-VSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLK 96
            E P  D+ E   +         + V     L +E  FVF P  R  RF W IDA G   
Sbjct: 372 SETPIEDTPEVVHEEPVIATLVVADVPPAPQLAAEPGFVFRPNSRATRFVWKIDAEGRFT 431

Query: 97  EISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTN 156
           E+S E  + +G +A  +IG    DV+ + ++DP+  + + L R++TW GKT LWP+EGT+
Sbjct: 432 EVSHEFAEAVGPHASDIIGSPFGDVAALFNLDPDGKLSEALARRDTWSGKTILWPVEGTS 491

Query: 157 LYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSS 216
           L VP+DLAALP Y+RNR+F GFRGFG+V ++    DP ALG  L        +     ++
Sbjct: 492 LVVPVDLAALPTYTRNRDFDGFRGFGVVRLSDAQEDPLALGLTLG------PDGIGHDAA 545

Query: 217 VEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFH 276
                 +  ++ +      ++  V         +D  +   +     + E    EQ    
Sbjct: 546 SLGPPAETIAEVAHEAETVLEEPVIDPAPTQEVEDQAVTASEPQTEPAPEEISTEQAAIE 605

Query: 277 TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY 336
           T       +K        +   +         P      +       + +        ++
Sbjct: 606 TPAQESAAEKAEGSADAGDVSAAEPVAELPQEPPALRISETPNRRFSDKI------VQLH 659

Query: 337 SHGNLFYANPSFLLLTKYKSVDDI----EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
           + G    A          K ++      E     + +  +  +    A+  +  +     
Sbjct: 660 NSGAGLTAAEQANFREIAKRLEAFGTRKEEPAASAPMEPSATVPAEPAVTEMAGFEEASG 719

Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ---NGIEPEDVDTRINKRKMEI 449
             A  A   T       SL              E   +      EP  +        +E 
Sbjct: 720 PEAFEAETPTADDADIPSLKEITPQEAIFENAVEAEREDDDAAEEPAVIAEDEATEGLEE 779

Query: 450 EVMQLCSI------------------LEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
              Q+  +                  ++     + I   +  ++  N    +L GY   +
Sbjct: 780 TASQIEVLTSFIPPRIKMTDGLSVGTVDQLPVAVLIHIGD-ALIHANPEFMRLTGYGSLE 838

Query: 492 IL 493
            L
Sbjct: 839 AL 840


>gi|319782145|ref|YP_004141621.1| PAS sensor protein [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317168033|gb|ADV11571.1| PAS sensor protein [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 1260

 Score =  472 bits (1215), Expect = e-131,   Method: Composition-based stats.
 Identities = 209/634 (32%), Positives = 344/634 (54%), Gaps = 16/634 (2%)

Query: 187  NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY 246
             R+D  P    +      +    +       ++        ++       +   ++   +
Sbjct: 625  ARLDGHPDEAAREAPPGMNVTGSLLDYAGQDDERGPVAAEPENTTAVSPGEEPEATDATH 684

Query: 247  YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
                DD + +  +      E      E+  + +     ++          +     L   
Sbjct: 685  DVLDDDSMTSADFRDAEDSEDWAQPDEEAASPDERAVAEQAVNAGDAAEIRVERPRLQVP 744

Query: 307  N------HPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDI 360
                    PS  +  DE +      + K P+P  ++S   L YAN  FL LT Y+++DD+
Sbjct: 745  PLKAEGFVPSAFSAGDEHKAPDTSLLGKLPVPLLIHSGDQLHYANEEFLSLTGYEALDDL 804

Query: 361  EIAGGLSTLLDAPKLSD---NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
              AGGL  L   P   D   +   + + L   D       A L ++ W    +L +    
Sbjct: 805  ADAGGLGALFADPYADDGVSDGTDRALRLKTRDGQEFPIEAILRSVPWRDGKALMLVVRR 864

Query: 418  FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
                +  P ++   G E    D      +++  + ++ +I++  +DG+ +I R+G I S 
Sbjct: 865  -SGEDDAPASLHVVGDEQTQPDI----SELKARIAEMRTIIDTATDGVVLIGRDGTIRSI 919

Query: 478  NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKE 535
            +R    LFG+  +D+  KPF       +      YL  +    +   +   +  +G   +
Sbjct: 920  SRPAEALFGFDSDDVTGKPFASLFAIESQRAARDYLNGLSEPGVASVMNDGREVIGRESQ 979

Query: 536  EKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
             + + L + I +LP  S +   + DI++WK+ +  L+ A+ +AE+ SS K+DFLAR+SHE
Sbjct: 980  GRFIPLFMTIGRLPNDSGFCAVVRDITQWKRAEEDLTQARAVAERASSQKTDFLARISHE 1039

Query: 596  IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
            IRTPL AIIGFSE++ +++FGP+ N RY +Y   I+RSGN VLD+VNDLLDISKIE+G+ 
Sbjct: 1040 IRTPLNAIIGFSELMVDEKFGPVANDRYRDYLRDINRSGNHVLDLVNDLLDISKIEAGQQ 1099

Query: 656  NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715
             + +E VSL++ ++E ++++Q  AN +R++IR+SFA+ +P ++ADLRSV+QIALNILSNA
Sbjct: 1100 EMAYEAVSLNDTLAETVAMMQPQANRERVIIRSSFASRLPEVVADLRSVRQIALNILSNA 1159

Query: 716  IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
            I +T +GGQ+I+ST + ++ +V++RVRDTG+GM++ E+E+A+KPF QI   ++ RG+GTG
Sbjct: 1160 IRYTQAGGQVIVSTAYETSGDVVMRVRDTGIGMSHAEIEQALKPFKQINALKRGRGDGTG 1219

Query: 776  LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            LGLPL KAMV+AN  +F I STP +GTL+E+ FP
Sbjct: 1220 LGLPLTKAMVEANRARFTINSTPGEGTLVEVAFP 1253



 Score =  176 bits (446), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 98/571 (17%), Positives = 173/571 (30%), Gaps = 56/571 (9%)

Query: 32  NGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDA 91
           N  E    +   P     E        +  V +T+          D     VRF W  DA
Sbjct: 306 NAGEDGGEQAPRPAASGPEAPQEPAALE--VQSTSAATPTTVSAIDRAAAPVRFVWRTDA 363

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151
            G    +S E    +G  A  +IG R  DV+    +DP+  I  LL+R++TW G++ LWP
Sbjct: 364 EGKFSALSPEFADIVGKPAADVIGRRFRDVAATFGLDPSGEISGLLERRDTWSGRSVLWP 423

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE-- 209
           + GT+L +P+DLAALP+Y R+R F GFRGFG+   +    DP A+G  L           
Sbjct: 424 VVGTDLKIPVDLAALPVYGRSRAFEGFRGFGVARASDAVVDPEAIGMALVPNGRAPATPE 483

Query: 210 ---IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
              I+        E+      Q+  P       ++ + +      D +         + +
Sbjct: 484 PQVIQPAPEQPNAEEPRAEDAQASDPFKGEVPALTIVPKQERRFADKVIRLAEHRQPAND 543

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
             L   E      + +  KK     ++    E+ E  +      +    D          
Sbjct: 544 KGLSTLERSAFREIGERLKKD-SAPVEPPETETAEASAAETEAPVKVSDDPMRAGGIPAS 602

Query: 327 DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGG---LSTLLD---APKLSDNNA 380
                P              +   L  +      E   G     +LLD           A
Sbjct: 603 GPENEPVEPSETDVDAEDEQNLARLDGHPDEAAREAPPGMNVTGSLLDYAGQDDERGPVA 662

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
            +P             +        + ++  +  F   E +  + +   +     E    
Sbjct: 663 AEPENTTAVSPGEEPEATDATHDVLDDDSMTSADFRDAEDSEDWAQPDEEAASPDERAVA 722

Query: 441 RIN-----KRKMEIEVMQLC-------------------------SILEATSDGIAIINR 470
                     ++ +E  +L                          S+L      + I + 
Sbjct: 723 EQAVNAGDAAEIRVERPRLQVPPLKAEGFVPSAFSAGDEHKAPDTSLLGKLPVPLLIHSG 782

Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530
           +  +   N     L GY   D L          +   +   +        +    ++   
Sbjct: 783 D-QLHYANEEFLSLTGYEALDDL---------ADAGGLGALFADPYADDGVSDGTDRALR 832

Query: 531 GSTKEEKLLSLRIII--KKLPFSSCYSLTMH 559
             T++ +   +  I+            L + 
Sbjct: 833 LKTRDGQEFPIEAILRSVPWRDGKALMLVVR 863


>gi|15887959|ref|NP_353640.1| two component sensor kinase [Agrobacterium tumefaciens str. C58]
 gi|15155563|gb|AAK86425.1| two component sensor kinase [Agrobacterium tumefaciens str. C58]
          Length = 1275

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 246/635 (38%), Positives = 360/635 (56%), Gaps = 12/635 (1%)

Query: 183  IVHVNRVDNDPRA---LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK 239
            +VH+    +  R     G++   +           +S EK + D     + P    ++  
Sbjct: 638  VVHLEDRRSRSREGLTAGEQAAFREIGRALAPSDMASEEKHEADAEGISAEPVVQDIQQD 697

Query: 240  VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
            +++ T   A  D     E       EE  L                     + +     +
Sbjct: 698  IAAETAKDASSDTGNDAETTE--PVEEDDLFADYVRGEQPAPVRAPTDEPTSAEKQVVTT 755

Query: 300  FE-YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVD 358
             E  ++      +S        LT ET+D+ P+   V++   L +ANP FL LT Y S+ 
Sbjct: 756  DEKPVADIAASMVSPPVRTPSALTAETLDQMPVALLVHAGDRLIHANPDFLRLTGYTSLT 815

Query: 359  DIEIAGGLSTLLDAPKLSD-NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
            ++E  GGL  LL   +L +  +    +++  ++   I   ARL +I+W    +L ++ +P
Sbjct: 816  ELEEVGGLEALLQRQELENMPDNEGGMVVVSAENDIIPVKARLQSIRWEETKALMLSLVP 875

Query: 418  FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
             E+         +N    E+ +   N   ++ E+ +L SILE  +DG+ ++  +G I S 
Sbjct: 876  LEEKPAAVMAANEN--TAENAEAGSNLSLLQGEMEELHSILETATDGVVLLGDDGEIRSL 933

Query: 478  NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKE 535
            NR+ S LF Y   +I  KPF       +   +  YL+ + +  +   L   +  +G    
Sbjct: 934  NRSASALFNYDNGEIAGKPFVTLFAHESQRAVLDYLSGLANNGVASVLNDGREVIGREAS 993

Query: 536  EKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
               L L + I +L  S  Y   + DI++WK+ + +L +AK+ AE  ++HK+DFLARVSHE
Sbjct: 994  GGFLPLFMTIGRLKSSHGYCAVIRDITQWKRTEEELRNAKRAAETANAHKTDFLARVSHE 1053

Query: 596  IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
            IRTPL AIIGFS+++  +RFGP+GNPRY+EYAN I RSG  VLDIVNDLLDISKIE+G+M
Sbjct: 1054 IRTPLNAIIGFSDMMATERFGPIGNPRYVEYANDIGRSGRHVLDIVNDLLDISKIEAGQM 1113

Query: 656  NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715
            ++ F  V L+E V+EA+SLVQ  AN +R++IRT+ A ++P+I+ADLRS+KQI LNILSNA
Sbjct: 1114 DVDFIAVPLNETVAEAVSLVQPQANNQRVIIRTALAQSVPQIVADLRSIKQIVLNILSNA 1173

Query: 716  IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGEGT 774
            I FTPSGGQI++ST + +N  V LR+RDTG+GMT  ELE+AMKPF Q+ +S +  RG+GT
Sbjct: 1174 IRFTPSGGQIVVSTAYEANGSVSLRIRDTGIGMTRAELEQAMKPFRQVASSGKRVRGDGT 1233

Query: 775  GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            GLGLPL KAMVDAN   F I STP +GTL+EI FP
Sbjct: 1234 GLGLPLTKAMVDANRANFSITSTPNEGTLVEITFP 1268



 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 94/467 (20%), Positives = 153/467 (32%), Gaps = 46/467 (9%)

Query: 37  EKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENT-----FVFDPIPRTVRFTWNIDA 91
           E +  ++   ++  +   T  + E  + T   +         FVF+   R  RF W IDA
Sbjct: 379 ENTFADDEIAETEAEEATTAADDELTTETETANIGTGEEARPFVFNAGARASRFVWKIDA 438

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151
            G    IS E  + +G  A  + GM   DV+ + ++DP+  I +LL R++TW GKT  WP
Sbjct: 439 EGRFSSISHEFAEAVGAKAAAVEGMGFADVAALFNLDPDGKIRELLGRRDTWSGKTIYWP 498

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
           +EGT+L VPIDLAALP Y+R REF GFRGFGIV +     DP A G              
Sbjct: 499 VEGTSLMVPIDLAALPTYTRAREFDGFRGFGIVRLADATEDPHATGLTFLNSEETEPAEV 558

Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE--ESSL 269
               +VE E +++ +              +   E     D         L   +  + + 
Sbjct: 559 LPQQAVEDESHELLAFVDEDTETDDNPHPALPDEPAVDIDIAGDAADGVLTEEQLDDETS 618

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD-------EGENLT 322
           PE E        + +       L++    S E L+     +               E   
Sbjct: 619 PEVESPIEAPAPEPSYSDKVVHLEDRRSRSREGLTAGEQAAFREIGRALAPSDMASEEKH 678

Query: 323 PETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
               +       V        A  +    +   +  +         L       +  A  
Sbjct: 679 EADAEGISAEPVVQDIQQDIAAETAKDASSDTGNDAETTEPVEEDDLFADYVRGEQPAPV 738

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
                    T    SA    +  + +    +         + P  +              
Sbjct: 739 RA------PTDEPTSAEKQVVTTDEKPVADIAASMVSPPVRTPSALTAE----------- 781

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
                          L+     + +   +  ++  N    +L GY  
Sbjct: 782 --------------TLDQMPVALLVHAGD-RLIHANPDFLRLTGYTS 813


>gi|13475462|ref|NP_107026.1| two component histidine protein kinase [Mesorhizobium loti
            MAFF303099]
 gi|14026214|dbj|BAB52812.1| two component histidine protein kinase [Mesorhizobium loti
            MAFF303099]
          Length = 1348

 Score =  468 bits (1205), Expect = e-129,   Method: Composition-based stats.
 Identities = 234/818 (28%), Positives = 376/818 (45%), Gaps = 58/818 (7%)

Query: 4    DSIISNPEDILTSNCKG-NTQDLSK-KKIDNGFETEKSKKENPCHDSF--EQSNFTDQNQ 59
            D +I   E    +N KG +T + S  ++I    + + +  E P  D    E+      N 
Sbjct: 570  DKVIRLAEHRQPANDKGLSTLERSAFREIGERLKKDSAPAEPPEADKPGTERPPEPVINT 629

Query: 60   ESVSNTNYLDSEN-TFVFDPIPRTVRFTWNID--AHGYLKEISEELPKTIGNYAFKMIGM 116
             +                 PI          D        E      +            
Sbjct: 630  PAEPTAETAAEAPVAKTETPILPADEVVATPDTVPDQKPSEAG----EITAESESD---- 681

Query: 117  RLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFS 176
                +++    D  +                   P +                       
Sbjct: 682  --AALAEPSETDAEDEADLARLDGGHPDDVADAEPAD--------------------TLP 719

Query: 177  GFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM 236
            G  G  + + +R        G   D     + E       V +         +       
Sbjct: 720  GAGGSLLNYADRN----DEPGPVADNDEPPVSEAVAAEPEVTEPVATGDGGDAKDATHDA 775

Query: 237  KNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS 296
             +   S+T       D    E        E +    E   T         +         
Sbjct: 776  VDDDDSMT-----SADFRDAEDNEDWGDGEKAAAADEQAATFGAGASDVVESPAGQPRLK 830

Query: 297  KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKS 356
                        PS  +  +E +      + K P+P  ++S   L YAN  FL LT Y +
Sbjct: 831  VPPLRTEGIV--PSAFSVGNESKAPDTSLLGKLPVPLLIHSGDQLHYANDEFLDLTGYDT 888

Query: 357  VDDIEIAGGLSTLLDAPKLSD---NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
            ++D+E AGGL  L   P   D   + + + + L   D       A L ++ W    +L +
Sbjct: 889  LEDLEDAGGLGALFADPYADDGTSDGSDRALRLKTRDGQEFPIDAILRSVPWRDGKALML 948

Query: 414  TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
                    +  P  +   G EP   D      +++  + ++ +I++  +DG+ +I  +G 
Sbjct: 949  VVRR-SGDDDAPVALHAVGEEPTQPDI----SELKARIAEMRTIIDTATDGVVLIGSDGT 1003

Query: 474  ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLG 531
            I S +R    LFG+  +++  KPF       +      YLT +    +   +   +  +G
Sbjct: 1004 IRSISRPAEALFGFDSDEVTGKPFASLFAIESQRAARDYLTGLSEPGVASVMNDGREVIG 1063

Query: 532  STKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
               + + + L + I +LP  S +   + DI++WK+ +  L+ A+ +AE+ SS K+DFLAR
Sbjct: 1064 REAQGRFIPLFMTIGRLPNDSGFCAVVRDITQWKRAEEDLTQARAVAERASSLKTDFLAR 1123

Query: 592  VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
            +SHEIRTPL AIIGFSE++ +++FGP+ N RY +Y   I+RSGN VLD+VNDLLDISKIE
Sbjct: 1124 ISHEIRTPLNAIIGFSELMVDEKFGPVANDRYRDYLRDINRSGNHVLDLVNDLLDISKIE 1183

Query: 652  SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
            +G+  + +E VSL++ ++E ++++Q  AN +R++IR+SFA+ +P ++ADLRSV+QIALNI
Sbjct: 1184 AGQQEMAYEAVSLNDTLAETVAMMQPQANRERVIIRSSFASRLPEVVADLRSVRQIALNI 1243

Query: 712  LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
            LSNAI +T +GGQ+I+ST + ++ +V++RVRDTG+GM+  E+E+A+KPF QI   ++ RG
Sbjct: 1244 LSNAIRYTQAGGQVIVSTAYETSGDVVMRVRDTGIGMSQAEIEQALKPFKQINALKRGRG 1303

Query: 772  EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            +GTGLGLPL KAMV+AN  +F I STP +GTL+E+ FP
Sbjct: 1304 DGTGLGLPLTKAMVEANRARFTINSTPGEGTLVEVAFP 1341



 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 79/354 (22%), Positives = 120/354 (33%), Gaps = 11/354 (3%)

Query: 45  CHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPK 104
              +       D  +ES   +    +      D     +RF W  DA G    +S E   
Sbjct: 358 VAQATGAEASVDSAKESKPASPAAQTPPARTIDRSAAPLRFVWRTDAEGKFSALSPEFAD 417

Query: 105 TIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLA 164
            +G  A  +IG R  DV+    +D +  I  LL+R++TW G++ LWP+ GT+L +P+DLA
Sbjct: 418 IVGKPAADVIGRRFRDVAAAFGLDASGEIAGLLERRDTWSGRSVLWPVVGTDLKIPVDLA 477

Query: 165 ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDI 224
           ALP+Y R+R F GFRGFG+   +    DP A+G  L                   E+   
Sbjct: 478 ALPVYGRSRAFEGFRGFGVARASDATVDPEAIGMALVPNGKAPAVSVPQAVEHPAEEPKT 537

Query: 225 FSQQSPPPHLRMKNKVSSLTEYYAHKDDVL-----KTEKYPLLTSEESSLPEQEDFHTIN 279
              ++  P+     K          K +                + +  L   E      
Sbjct: 538 EEPKAKEPNAADPFKGEVPALTIVPKQERRFADKVIRLAEHRQPANDKGLSTLERSAFRE 597

Query: 280 LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG 339
           + +  KK         + +           +  A     E      V K   P       
Sbjct: 598 IGERLKKDSAPAEPPEADKPGTERPPEPVINTPAE-PTAETAAEAPVAKTETPILPADE- 655

Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393
               A P  +   K     +I         L  P  S+ +A     L R D   
Sbjct: 656 --VVATPDTVPDQKPSEAGEITAESESDAALAEP--SETDAEDEADLARLDGGH 705


>gi|325292003|ref|YP_004277867.1| two component sensor kinase [Agrobacterium sp. H13-3]
 gi|325059856|gb|ADY63547.1| two component sensor kinase [Agrobacterium sp. H13-3]
          Length = 1248

 Score =  467 bits (1203), Expect = e-129,   Method: Composition-based stats.
 Identities = 232/628 (36%), Positives = 343/628 (54%), Gaps = 6/628 (0%)

Query: 188  RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP-PHLRMKNKVSSLTEY 246
            R       L       F  +        +V  E            P  +           
Sbjct: 614  RRWRSREGLTAGEQAAFREIGRTLAPLDAVSDEGPKAEEDAPSTDPAAQHIQDDIDAVTQ 673

Query: 247  YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
                  + +         E+    +               +     +  +       +  
Sbjct: 674  VDLPPVLEEDVNAAEPAEEDDLFADYVRGERPAATNKPADEIQIEEKTVAFNEVVPAADI 733

Query: 307  NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
                +S      + L+ ET+D+ P+   V++   L +ANP FL LT Y S+D+++  GGL
Sbjct: 734  AAAMVSPPLRPADALSAETLDQMPVALLVHAGDRLIHANPDFLRLTGYGSLDELDEVGGL 793

Query: 367  STLLDAPKLSD-NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
              LL   +L D  +    +++  ++   I   ARL +I+W    +L ++ +P E+     
Sbjct: 794  EALLQRQELEDMPDNEGGMVVVSAENDIIPVKARLQSIRWEDTKALMLSLVPLEEKQAPV 853

Query: 426  ENMPQNGIEPEDVDTRINKRK-MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
                +N    E  +        ++ EV +L SILE  +DG+ ++  +G I S NR+ S L
Sbjct: 854  TAANENTSAAETANADAGSVSVLQGEVEELHSILETATDGVVLLGDDGEIRSLNRSASAL 913

Query: 485  FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLR 542
            F Y   +I  KPF       +   +  YL+ + +  +   L   +  +G       L L 
Sbjct: 914  FNYDNGEIAGKPFVTLFAHESQRAVLDYLSGLANNGVASVLNDGREVIGREASGGFLPLF 973

Query: 543  IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
            + I +L  S  Y + + DI++WK+ + +L +AK+ AE  ++HK+DFLARVSHEIRTPL A
Sbjct: 974  MTIGRLKSSHGYCVVIRDITQWKRTEEELRNAKRAAETANAHKTDFLARVSHEIRTPLNA 1033

Query: 603  IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
            IIGF++++  +RFGP+G+PRY+EY+N I RSG  VLDIVNDLLDISKIE+G+M++ F  V
Sbjct: 1034 IIGFADMMATERFGPIGHPRYVEYSNDIGRSGRHVLDIVNDLLDISKIEAGQMDVDFIAV 1093

Query: 663  SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
             L+E V+EA+SLVQ  AN +R++IRT+ + ++P+I+ADLRS+KQI LNILSNAI FTPSG
Sbjct: 1094 PLNETVAEAVSLVQPQANNQRVIIRTALSQSVPQIVADLRSIKQIVLNILSNAIRFTPSG 1153

Query: 723  GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGEGTGLGLPLA 781
            GQI++ST + +N  V LR+RDTG+GMT  ELE+AMKPF Q+ +S +  RG+GTGLGLPL 
Sbjct: 1154 GQIVVSTAYEANGSVALRIRDTGIGMTRAELEQAMKPFRQVASSGKRVRGDGTGLGLPLT 1213

Query: 782  KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            KAMVDAN   F I STP +GTL+EI FP
Sbjct: 1214 KAMVDANRANFSITSTPNEGTLVEITFP 1241



 Score =  172 bits (437), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 90/466 (19%), Positives = 152/466 (32%), Gaps = 34/466 (7%)

Query: 23  QDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRT 82
           Q  S+   +   + E+++ E+   ++    +     ++  +     D    FVF+   R 
Sbjct: 349 QASSEDHTEQAPDVERAEAEDEVAETIAAQDAAPVEEDLPAAVEPTDEPQPFVFNAGARA 408

Query: 83  VRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNT 142
            RF W IDA G    IS E  + +G  A  + GM   DV+ + ++DP   I +LL R++T
Sbjct: 409 SRFVWKIDAEGRFSSISHEFAEAVGAKAAAVEGMSFADVAALFNLDPEGKIRELLGRRDT 468

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR-LD 201
           W GKT  WP+EGT+L VPIDLAALP Y+R+REF GFRGFGIV +     DP A G   L 
Sbjct: 469 WSGKTIYWPVEGTSLMVPIDLAALPTYTRSREFDGFRGFGIVRLADAAEDPHATGLTFLH 528

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
            +     E+    ++ +++                  ++ +  +    +    +     +
Sbjct: 529 GEDILQTEVLPQPAAADED-----------------EELLAFLDELDEEIPAAEDAPAEI 571

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
              E        +F    L            +    +   +L  R   S        +  
Sbjct: 572 SDEERPHDYSPPEFEVPALAI--VPTPEPEPEPTYSDKVVHLEERRWRSREGLTAGEQAA 629

Query: 322 TPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
             E          V   G      P               I   +  +            
Sbjct: 630 FREIGRTLAPLDAVSDEG------PKAEEDAPSTDPAAQHIQDDIDAVTQVDLPPVLEED 683

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
                   +    A   R        + +  +       A                    
Sbjct: 684 VNAAEPAEEDDLFADYVRGERPAATNKPADEIQIEEKTVAFNEVVPAADIAAAM-VSPPL 742

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
                +  E       L+     + +   +  ++  N    +L GY
Sbjct: 743 RPADALSAE------TLDQMPVALLVHAGD-RLIHANPDFLRLTGY 781


>gi|108805455|ref|YP_645392.1| multi-sensor hybrid histidine kinase [Rubrobacter xylanophilus DSM
           9941]
 gi|108766698|gb|ABG05580.1| multi-sensor hybrid histidine kinase [Rubrobacter xylanophilus DSM
           9941]
          Length = 1369

 Score =  467 bits (1202), Expect = e-129,   Method: Composition-based stats.
 Identities = 135/746 (18%), Positives = 277/746 (37%), Gaps = 41/746 (5%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYG 145
           +  D  G L   ++ L + +G  A +++G       D  +    +    ++        G
Sbjct: 136 FETDLAGNLTFANQALGRILGYPASRLLGKNSRQYMDRENARKVHEAFKEVYATGRAARG 195

Query: 146 KT-TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
               + P  G+     ++ +   I   +    GFRG  I+             +  + + 
Sbjct: 196 LVWEMIPRTGSPRC--VEGSVSLIRDGSGRPCGFRG--ILRDITERLRMEERLRSSEAEL 251

Query: 205 SHLHEIKKGHSSVEKEKYD--IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
             L             +      +  +P P  R   ++           D  +     + 
Sbjct: 252 RALFAAIDDIVLKLDREGRCLDIAPSNPSPLYRPGREMVGRNVREIFPVDEKEPLLDSVR 311

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
              ++  P   +       +        + +                         E   
Sbjct: 312 RVLQTGRPAAMECSMQLGYRRLYFDVSISPEGEGAAVLVARDVTRERLAEQELRRAEERY 371

Query: 323 PETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
              +++ P   +      G   Y +P    +  Y   D           +  P+  D   
Sbjct: 372 RRLIEQIPGIVYTEDARTGETLYDSPRVEEILGY-PADTYRKDPNYWQKIIHPE--DREL 428

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
           ++ +    S    ++A  R+          + +         +        GI  +  + 
Sbjct: 429 LRALEERASREGKLSAEYRVFA---ADGRVVWVREEGALIPGEEGRPDVWQGIILDITER 485

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +  ++ +     +     +    G+A++  +G  L  NRA+ ++ GYP E +L+K F   
Sbjct: 486 KRAEQALHESEQRFRRAFDDAPIGMALVGLDGRWLQANRALCEIVGYPRERLLQKTFQDI 545

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSL 556
                       L  +++ ++    +          +++ + + +  +   +        
Sbjct: 546 THPEDLDADLELLRRLVAREIPG-YQMEKRYIHASGRIVWVLLSVSLVTGENDEPLYVIA 604

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            + DI+E K+ + +L  AK+ AE  S  KS+F+A +SHEIRTP+  +IG +E++ +    
Sbjct: 605 QVQDITERKRIEEELREAKEQAEAASRAKSEFVANMSHEIRTPMNGVIGMAELLLDTPLT 664

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
           P       EYA  I  SG  +L I+ND+LD SKIE+G+++L   P  + + V E +SL+ 
Sbjct: 665 P----EQREYARTIRSSGEALLAILNDILDFSKIEAGRLSLERIPFEIHKEVEEVVSLLA 720

Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
             A+ K + +       +P  I  D   ++Q+  N++ NAI FT  G ++++S + +  E
Sbjct: 721 PRAHAKGLELICFIEPGVPPLIKGDPFRLRQVLTNLIGNAIKFTEEG-EVVVSASLSKEE 779

Query: 736 --------------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
                         E+   V+D+G+G+   + +   + F Q   S   R  GTGLGL ++
Sbjct: 780 KKKSAPAGERGGEIELRFEVKDSGIGIQEEQQKHLFEAFSQADASTTRRYGGTGLGLAIS 839

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEII 807
           + +V+   G+  + S+P +G+     
Sbjct: 840 RQLVEMMGGEIGLKSSPKEGSTFHFS 865



 Score =  127 bits (319), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 43/508 (8%), Positives = 131/508 (25%), Gaps = 48/508 (9%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D  G +   +    +  G  + + +G    ++      +P   I + ++ +  W G+   
Sbjct: 27  DEDGRISFWNRSAERLYGWSSSEALGRNARELLKTRSGEPLEEIEERVRSEGAWEGELRQ 86

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
              +G     P+ +    + +       F                     L+       E
Sbjct: 87  HARDGR----PLVVECRWVRAGAGNIVEFS-----RDTAERQKAEEYRSVLEAIEDGYFE 137

Query: 210 IKKG--HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY--PLLTSE 265
                  +   +    I               +   +  Y  +++  K  +    +  + 
Sbjct: 138 TDLAGNLTFANQALGRILG-------YPASRLLGKNSRQYMDRENARKVHEAFKEVYATG 190

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
            ++     +      +    +     +++ S     +       +     +E    +   
Sbjct: 191 RAARGLVWEMIPRTGSPRCVEGSVSLIRDGSGRPCGFRGILRDITERLRMEERLRSSEAE 250

Query: 326 VDKCPIPF-----FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
           +             +   G      PS          + +    G +     P       
Sbjct: 251 LRALFAAIDDIVLKLDREGRCLDIAPSNPSPLYRPGREMV----GRNVREIFPVDEKEPL 306

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
           +  V          A    +            ++  P  +            +  +    
Sbjct: 307 LDSVRRVLQTGRPAAMECSMQLGYR--RLYFDVSISPEGEGAA-------VLVARDVTRE 357

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILRKP--F 497
           R+ ++++     +   ++E     +   +   G  L  +  V ++ GYP +   + P  +
Sbjct: 358 RLAEQELRRAEERYRRLIEQIPGIVYTEDARTGETLYDSPRVEEILGYPADTYRKDPNYW 417

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---- 553
              +      ++               L         + +++ +R     +P        
Sbjct: 418 QKIIHPEDRELLRALEERASREGK---LSAEYRVFAADGRVVWVREEGALIPGEEGRPDV 474

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKE 581
           +   + DI+E K+ +  L  +++   + 
Sbjct: 475 WQGIILDITERKRAEQALHESEQRFRRA 502



 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 30/275 (10%), Positives = 82/275 (29%), Gaps = 25/275 (9%)

Query: 319 ENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
           +      ++            G + + N S   L  + S + +                 
Sbjct: 9   DAREKRLLEFSHDAVLARDEDGRISFWNRSAERLYGWSSSEALG---------------- 52

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
               +        R+          ++        +     +      E           
Sbjct: 53  ----RNARELLKTRSGEPLEEIEERVRSEGAWEGELRQHARDGRPLVVECRWVRAGAGNI 108

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
           V+   +  +   +  +  S+LEA  DG    +  G +   N+A+ ++ GYP   +L K  
Sbjct: 109 VEFSRDTAE-RQKAEEYRSVLEAIEDGYFETDLAGNLTFANQALGRILGYPASRLLGKNS 167

Query: 498 TVFLEQNTPSVMNHYLTEILSLDL-RQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CY 554
             ++++     ++    E+ +     + L    +  T   + +   + + +        +
Sbjct: 168 RQYMDRENARKVHEAFKEVYATGRAARGLVWEMIPRTGSPRCVEGSVSLIRDGSGRPCGF 227

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
              + DI+E  + + +L  ++       +   D +
Sbjct: 228 RGILRDITERLRMEERLRSSEAELRALFAAIDDIV 262



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 25/194 (12%), Positives = 68/194 (35%), Gaps = 12/194 (6%)

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           +LE + D +   + +G I   NR+  +L+G+   + L +     L+  +   +      +
Sbjct: 15  LLEFSHDAVLARDEDGRISFWNRSAERLYGWSSSEALGRNARELLKTRSGEPLEEIEERV 74

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKK 576
            S       E       ++ + L +     +    +       D +E ++ +     +  
Sbjct: 75  RSEGA---WEGELRQHARDGRPLVVECRWVRAGAGN-IVEFSRDTAERQKAEE--YRSVL 128

Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGF-SEVIK----NQRFGPLGNPRYIEYANYID 631
            A ++   ++D    ++      L  I+G+ +  +      Q        +  E    + 
Sbjct: 129 EAIEDGYFETDLAGNLTFA-NQALGRILGYPASRLLGKNSRQYMDRENARKVHEAFKEVY 187

Query: 632 RSGNLVLDIVNDLL 645
            +G     +V +++
Sbjct: 188 ATGRAARGLVWEMI 201


>gi|110632533|ref|YP_672741.1| PAS/PAC sensor signal transduction histidine kinase [Mesorhizobium
            sp. BNC1]
 gi|110283517|gb|ABG61576.1| PAS/PAC sensor signal transduction histidine kinase [Chelativorans
            sp. BNC1]
          Length = 1192

 Score =  467 bits (1202), Expect = e-129,   Method: Composition-based stats.
 Identities = 214/632 (33%), Positives = 337/632 (53%), Gaps = 27/632 (4%)

Query: 190  DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH 249
             +D   L    D+      +  K  S  +KE  D+  + +P                   
Sbjct: 569  RHDIEELQSPADQADQVDQDDLKNASLEDKENPDLQLEAAPGGQGEEVRPELEADAPRQS 628

Query: 250  KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
            K    +       T       E++ +      + + +Q     +     + E        
Sbjct: 629  KAAGGEASDPVPDTEAHFEQEEEQTYREPEETEDSLQQAASGSK-EQGPAAEPDETVPQR 687

Query: 310  SL----------SAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDD 359
                            +  +      +   P+P  ++S   L YAN  F  LT Y  + +
Sbjct: 688  RSQIAYLPSAFHRPEAERKQTEAETILAHLPLPVLIHSGDRLHYANREFYRLTGYADLAE 747

Query: 360  IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
            +E AGGL  L + P  + N+  K ++L  +D T     A L ++ W+   +L +   P  
Sbjct: 748  LESAGGLGALFEEP-AAGNSPKKTLLLRMADGTDRPVEAHLQSVAWDGRKALMLALHPAM 806

Query: 420  KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
            +A   PE   +                    + ++ +I++  +DGIA+I  +G I S NR
Sbjct: 807  QAEPTPEEAAKAAELE-------------ARLSEMRAIVDTATDGIAVIGNDGTIRSINR 853

Query: 480  AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEK 537
                LFG+  E++  KPF+      +   +  YL  +    +   L   +  +G   + +
Sbjct: 854  PAEALFGFDAENVTGKPFSSLFAIESQRTVQDYLAGLSDNGVASVLNDGRQVIGRESQGR 913

Query: 538  LLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
             + L + I +LP  S Y   + DI+ WK+ +  L+ A+  AE+ SS KS+FLARVSHEIR
Sbjct: 914  FIPLFMTIGRLPNGSGYCAVLRDITHWKRAEEDLTQARAQAERASSQKSEFLARVSHEIR 973

Query: 598  TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
            TPL AIIGFSE++ +++FGP+GN RY +Y   I+RSGN VLD+VNDLLDISKIE+G+  +
Sbjct: 974  TPLNAIIGFSELMIDEKFGPIGNDRYRDYLRDINRSGNHVLDLVNDLLDISKIEAGQQEM 1033

Query: 658  HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
              E V L++ +++ I+++Q  AN +R++IR+S A+ +P ++ADLRSV+QIA+N+LSNA+ 
Sbjct: 1034 AHEAVPLNDTLAQVIAMMQPQANRERVIIRSSLASRLPDVVADLRSVRQIAINLLSNAVR 1093

Query: 718  FTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
            +TP+GGQ+++ST +  +  V+LRVRDTGVGM++ EL++A+KPF QI   ++ RG+GTGLG
Sbjct: 1094 YTPAGGQVVVSTVYERDGSVVLRVRDTGVGMSSAELDEALKPFRQINALRRKRGDGTGLG 1153

Query: 778  LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            LPL +AMV+AN  +F I STP +GTL+EIIFP
Sbjct: 1154 LPLTRAMVEANRAQFSIASTPGEGTLVEIIFP 1185



 Score =  152 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 101/585 (17%), Positives = 185/585 (31%), Gaps = 88/585 (15%)

Query: 35  ETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGY 94
           E E  +  +  H+           Q+  S  +  D           RTVRF+W  DA G 
Sbjct: 233 EKEALEAGSAAHEGSAGREKPLAPQDHTSRPHEPDERTA------SRTVRFSWRTDAQGR 286

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEG 154
              IS+E  + +G  A  +IG    +VS+   +D +  I  LL R++TW G+T +WP+EG
Sbjct: 287 FSSISDEFAQAMGRNATDVIGRTFREVSNAFGLDADGSISRLLDRRDTWSGRTVMWPLEG 346

Query: 155 TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS--------- 205
           TNL VP+DLAALPIY R R F GFRGFGI  +   + DP A+G  L              
Sbjct: 347 TNLKVPVDLAALPIYGRGRVFEGFRGFGIARLGEAELDPEAIGTVLAPSSRGNTHATTPV 406

Query: 206 --HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
                  +    SV+++K          P      K +S        +  +        +
Sbjct: 407 SEEQEPHRPSDFSVDQDKSATSDPVKADPF--QGEKPASGRAAEPQSEPKIVRLAEHRES 464

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
           + + SL   E      + +  ++   G L    KE  +      +        +    + 
Sbjct: 465 TWDGSLSASERTTFREIGERLRRASEGRLDAEDKEGKKSADRPLNGRAVESTQDELPNST 524

Query: 324 ETVDKCPIPF----FVYSHGNLFYANPSFLLLTKYKS-VDDIEIAGGLSTLL-------- 370
              ++ P+               + NP+   +++  + V+       +  L         
Sbjct: 525 TLAEEGPLAQGNGELDDGAEEEVFENPANENVSQPTAMVEADGSRHDIEELQSPADQADQ 584

Query: 371 ---------------------------DAPKLSDNNAIKPVMLYRSDRTCIA-------- 395
                                         ++            ++     +        
Sbjct: 585 VDQDDLKNASLEDKENPDLQLEAAPGGQGEEVRPELEADAPRQSKAAGGEASDPVPDTEA 644

Query: 396 --ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD-----TRINKRKME 448
                   T +   E   ++         Q P   P   +           +  ++ + E
Sbjct: 645 HFEQEEEQTYREPEETEDSLQQAASGSKEQGPAAEPDETVPQRRSQIAYLPSAFHRPEAE 704

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
            +  +  +IL      + I + +  +   NR   +L GY              E  +   
Sbjct: 705 RKQTEAETILAHLPLPVLIHSGD-RLHYANREFYRLTGY----------ADLAELESAGG 753

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553
           +     E  + +  +   K  L    +     +   ++ + +   
Sbjct: 754 LGALFEEPAAGNSPK---KTLLLRMADGTDRPVEAHLQSVAWDGR 795



 Score = 38.1 bits (87), Expect = 6.3,   Method: Composition-based stats.
 Identities = 22/258 (8%), Positives = 57/258 (22%), Gaps = 14/258 (5%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            I   G ++ I+       G  A  + G     +     I+    + D L    +  G  +
Sbjct: 842  IGNDGTIRSINRPAEALFGFDAENVTGKPFSSL---FAIESQRTVQDYLA-GLSDNGVAS 897

Query: 149  LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFG-IVHVNRVDNDPRALGKRLDKKFSHL 207
            +       +        +P++          G+  ++              +   +    
Sbjct: 898  VLNDGRQVIGRESQGRFIPLFMTIGRLPNGSGYCAVLRDITHWKRAEEDLTQARAQAERA 957

Query: 208  HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
               K    +    +              M ++         ++D +    +         
Sbjct: 958  SSQKSEFLARVSHEIRTPLNAIIGFSELMIDEKFGPIGNDRYRDYLRDINRSGNHVL--D 1015

Query: 268  SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
             + +  D   I   Q         L +   +    +  +          E   +      
Sbjct: 1016 LVNDLLDISKIEAGQQEMAHEAVPLNDTLAQVIAMMQPQ-------ANRERVIIRSSLAS 1068

Query: 328  KCPIPFFVYSHGNLFYAN 345
            + P              N
Sbjct: 1069 RLPDVVADLRSVRQIAIN 1086


>gi|323136816|ref|ZP_08071897.1| histidine kinase [Methylocystis sp. ATCC 49242]
 gi|322398133|gb|EFY00654.1| histidine kinase [Methylocystis sp. ATCC 49242]
          Length = 883

 Score =  462 bits (1189), Expect = e-127,   Method: Composition-based stats.
 Identities = 208/733 (28%), Positives = 333/733 (45%), Gaps = 30/733 (4%)

Query: 79  IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK 138
             R  RF W  DA G   +I+  L   +G  +  ++G  + +V+    +D  + +   + 
Sbjct: 171 GARAPRFLWKTDAVGRFIDITHVLADVVGEESADILGRPVDEVARSFSLD--SALTQAIA 228

Query: 139 RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
            Q +W G    WP+E  +  VP+ L ALP    +R F+GF+G+G++H++R    P     
Sbjct: 229 AQKSWSGVDVDWPLENLSERVPMTLGALPTTDSDRRFAGFQGYGVLHLSRAYVAPGQQAG 288

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
                     +      + E++                 + V  L    A        + 
Sbjct: 289 AGAAPPPEKEKPPPSAPAPERDDIGY-----------RADNVVPLRPSAATPRIEEPRDP 337

Query: 259 YPLLTSEE-SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
               T          E    +     +     GT  +  +E+    +     +     D 
Sbjct: 338 AADATLTASEQSAFDEIARALLAGDASGDDAAGTPADALEETESAPAEAEPAAAPRARD- 396

Query: 318 GENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
                 E +D+ P+   +    +  + N + L    Y      +  GGL+ +       +
Sbjct: 397 --RTVEEVLDRLPVGVLIARGADTLFVNRTLLDYLGYADRAAFDTYGGLARMFFGRGPGE 454

Query: 378 NNA-IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
            N    P  +  SD   +     L T++W  E +  +T        + P+          
Sbjct: 455 PNGHAGPAAVQSSDGERLDVDVHLQTLEWEGEAATLLTLRRNHHRPRGPD----ESALAL 510

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             +      ++      L ++LE+    IAI+  +G+I S     + LFG         P
Sbjct: 511 AREMEARLARVRANNNLLRAVLESDGSAIAIVCDDGLIESATAGFAALFGAETGAFDGLP 570

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556
                       +   ++ + S       +  T   T   + + +   +++LP  +    
Sbjct: 571 LASLFAAQEGRTIAGLISRVKSE------QNETARLTARARGVPIEASLQRLPVGAGKIC 624

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
                    +  ++L  A+  AE  S+ KSDFLARVSHEIRTPL AIIGF+EV+  +RFG
Sbjct: 625 VRLKEPAADRRNDELEAARVAAEHASAAKSDFLARVSHEIRTPLNAIIGFAEVMMEERFG 684

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
           P+G+ RY EY   +  SG  VL +VNDLLD+SKIE+GK+ L FE V  +  +SE +S++Q
Sbjct: 685 PIGSERYKEYLKDVHASGTHVLSLVNDLLDLSKIEAGKLELSFERVDANAIISECVSIMQ 744

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
             AN+ R+++R + A  +P I AD RS+KQI LN+LSNA+ F   GGQ+I+ST  T    
Sbjct: 745 TQANQGRVVVRLALAQRLPPIRADERSLKQILLNLLSNAVKFNEPGGQVIVSTALTEAGY 804

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           V++RV+DTGVGM++ E+E A++PF QI  +   +  GTGLGLPL KA+++AN   F I S
Sbjct: 805 VVIRVKDTGVGMSDDEVETALEPFKQI--ATSRKVRGTGLGLPLTKALIEANHASFTIKS 862

Query: 797 TPAKGTLIEIIFP 809
              +GTLIE+ FP
Sbjct: 863 RKNEGTLIEVAFP 875


>gi|222147633|ref|YP_002548590.1| two component sensor kinase [Agrobacterium vitis S4]
 gi|221734621|gb|ACM35584.1| two component sensor kinase [Agrobacterium vitis S4]
          Length = 1410

 Score =  460 bits (1183), Expect = e-127,   Method: Composition-based stats.
 Identities = 231/651 (35%), Positives = 328/651 (50%), Gaps = 30/651 (4%)

Query: 189  VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA 248
              +   A  +  D         +      +  K D  +  S        N   S     A
Sbjct: 753  DASADHATPEATDTTVPSPRAERDSLPENDNTKPDPDTDLSASQASEKANAEVSDESTSA 812

Query: 249  HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
               D L          E           +                 N+ +          
Sbjct: 813  EDGDDLTDVVSEQEGDELDETVVDFPAPSAGDEVSANTNDDAEDGKNAADEMILPVASVP 872

Query: 309  PSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
             +L          +P+ +D  P+    +    L +ANP FL LT Y  +D +  +GGL  
Sbjct: 873  GALLPRPPRDVVFSPDVLDMLPVALLAHRGDTLIHANPEFLALTGYADLDALAQSGGLDA 932

Query: 369  LLD-------------APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
            LL               P   D      +++ R+D   +  SARL +I+W   ++L +  
Sbjct: 933  LLQRDDVVQGDNPQDDQPGTGDARRDGRLVVVRADDALVPVSARLQSIRWEEASALLLAL 992

Query: 416  IPFEKANQFPENMP--------------QNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
            +P          +               Q G++       +    + IEV +L SILE  
Sbjct: 993  VPQAATKPSEAVIADHTPRSVADAGDSSQPGLDHPTRLDAVEHTGLRIEVEELRSILETA 1052

Query: 462  SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
            +DG+  I+ +G I + N A S LF Y  +DI  KPF       +   +  YL  +    +
Sbjct: 1053 TDGVVTISTDGEIRTVNGAASALFNYDEDDIRGKPFVTLFAHESQRAILDYLGGLTGHGV 1112

Query: 522  RQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579
               L   +  +G       + L + I +L  S+ +   + DI++WK+ + +L  AK+ AE
Sbjct: 1113 ASVLNDGREVIGRESSGGFIPLFMTIGRLSSSNGFCAVIRDITQWKRTEEELRSAKRAAE 1172

Query: 580  KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639
              ++HK+DFLARVSHEIRTPL AIIGF++++ ++RFGP+G+ RY EYA  I RSG  VLD
Sbjct: 1173 TANAHKTDFLARVSHEIRTPLNAIIGFADIMADERFGPIGHGRYAEYAADIGRSGRHVLD 1232

Query: 640  IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA 699
            IVNDLLDISKIE+G+M+L F  V L+E VSEA+++VQ  AN +R++IRT+ + ++P ++A
Sbjct: 1233 IVNDLLDISKIEAGEMDLDFIAVGLNETVSEAVAIVQPQANGQRVIIRTALSQSVPNVVA 1292

Query: 700  DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKP 759
            D+RS+KQI LNILSNAI FTPSGGQII+ST +  N  V LR+RDTG+GMT  ELE+AMKP
Sbjct: 1293 DMRSIKQIVLNILSNAIRFTPSGGQIIVSTNYEPNGSVTLRIRDTGIGMTRAELEQAMKP 1352

Query: 760  FGQIPNSQQI-RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            F Q+       RG+GTGLGLPL KAMVDAN   F I STP +GTL+EI FP
Sbjct: 1353 FRQVSPGGARLRGDGTGLGLPLTKAMVDANRASFAIQSTPNEGTLVEITFP 1403



 Score =  161 bits (407), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 91/525 (17%), Positives = 175/525 (33%), Gaps = 41/525 (7%)

Query: 69  DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID 128
           ++E  F F P  R  RF W +DA G   E+S E  K +G  +  + G    D++ + ++D
Sbjct: 472 NTEEDFAFAPTMRAARFVWKVDALGCFSEVSPEFGKAVGPRSAAIEGQTFADLAALFNLD 531

Query: 129 PNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNR 188
           P+  I +LLK+++TW GKT  WPIEGT+L VP+DLAALP Y+RNR+F GFRGFG+V +  
Sbjct: 532 PDGKIVELLKKRDTWSGKTIYWPIEGTSLKVPVDLAALPTYTRNRDFDGFRGFGVVRLAD 591

Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM----KNKVSSLT 244
              D   +G  L    +     ++   +  +E     +  +P    +       +     
Sbjct: 592 CIEDTDKVGLTLSTPLNQTGTTEQAAQADPQEDMRDDAPAAPAEVEKADTIPAPERVEEQ 651

Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
           E    +   L       L   E+ +  +            +   F  +           +
Sbjct: 652 EPEREEVPALVISAPAPLPQAENIVQLKPRHFGREGLSPAEHATFQEIARRLDALGAKSA 711

Query: 305 HRNHPSLSAY--FDEGENLTPETVDKCPIPFFVYSHGN------LFYANPSFLLLTKYKS 356
             +    S     D G +      D+ P P    +           +A P     T    
Sbjct: 712 DGSRDLSSKKGHTDTGRDDKATVEDQNPSPVDAANAETQTPDASADHATPEATDTTVPSP 771

Query: 357 VDDIEIAGGLSTLLDAPKLS---------------------DNNAIKPVMLYRSDRTCIA 395
             + +           P                        ++      ++   +   + 
Sbjct: 772 RAERDSLPENDNTKPDPDTDLSASQASEKANAEVSDESTSAEDGDDLTDVVSEQEGDELD 831

Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
            +          +   A T    E      + M                R +        
Sbjct: 832 ETVVDFPAPSAGDEVSANTNDDAEDGKNAADEMILPVASVPGALLPRPPRDVVFSPD--- 888

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP--FTVFLEQNTPSVMNHYL 513
            +L+     +     +  ++  N     L GY   D L +       L+++     ++  
Sbjct: 889 -VLDMLPVALLAHRGD-TLIHANPEFLALTGYADLDALAQSGGLDALLQRDDVVQGDNPQ 946

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM 558
            +       +   ++ +    ++ L+ +   ++ + +    +L +
Sbjct: 947 DDQPGTGDARRDGRLVVVR-ADDALVPVSARLQSIRWEEASALLL 990


>gi|163758106|ref|ZP_02165194.1| putative two-component regulator sensor histidine kinase protein
            [Hoeflea phototrophica DFL-43]
 gi|162284395|gb|EDQ34678.1| putative two-component regulator sensor histidine kinase protein
            [Hoeflea phototrophica DFL-43]
          Length = 1325

 Score =  459 bits (1182), Expect = e-127,   Method: Composition-based stats.
 Identities = 231/650 (35%), Positives = 339/650 (52%), Gaps = 14/650 (2%)

Query: 172  NREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDI-FSQQSP 230
              E + FR  G    +   +D +A       +F       +  S V   + D      + 
Sbjct: 671  AGEQAAFREIGARLSDAGGSDDKADETGEPPRFGKRQPPLEADSDVRDIEVDFDGKAHTA 730

Query: 231  PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG 290
                   + VS   E     D     E      +E S      D            +   
Sbjct: 731  DGIRSAGDAVSRDDEASFEDDARADLEDSSATAAEASEQTTGID--AARDEASATDERST 788

Query: 291  TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLL 350
              +             +  +L         L    +D  P P  V++   L +ANP FL 
Sbjct: 789  EGREAEDAPVPATPWPSAFALPPRQVMHAGLNASLIDAIPSPLLVHAADTLIHANPEFLE 848

Query: 351  LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
            LT Y S++ +  AGGL  LL+            + + R D      SARL ++ W   ++
Sbjct: 849  LTGYGSLEALSEAGGLDHLLERSGDDGQLEDGSLTVRRGDGASRKVSARLRSVNWGDAHA 908

Query: 411  LAMTFIPFEKANQFPENMP-----QNGIEPEDVDTRINKR----KMEIEVMQLCSILEAT 461
            L +   P  ++    +           I   D+D    +      + IE  +L SILE  
Sbjct: 909  LLLALAPATESAPEADQAESPAPVAQLIATNDMDIDPAQAGSSDALAIEAEELRSILETA 968

Query: 462  SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
            +DG+ I++ +G I S N +   LF Y   D L +PF +     +   +  Y++ +    +
Sbjct: 969  TDGVVILDNDGTIRSMNGSAFALFNYDEHDTLHQPFAMLFAHESQRAVMDYISGLAEHGV 1028

Query: 522  RQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579
               L   +  +G       L L + I +L  S+ Y   + DI++WK+ + +L  AK+ AE
Sbjct: 1029 SSVLNDGREVIGREASGGFLPLFMTIGRLSRSNGYCAVLRDITQWKRTEEELRTAKRDAE 1088

Query: 580  KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639
              +SHKSDFLARVSHEIRTPL AIIGFSE++  +RFGP+G+PRY+EYA+ I  SG  VLD
Sbjct: 1089 TANSHKSDFLARVSHEIRTPLNAIIGFSEMMSEERFGPIGSPRYLEYAHDIGNSGKHVLD 1148

Query: 640  IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA 699
            IVNDLLDISKIE+G++++ F  VSL++ ++E++SL+Q  AN +R++IRTS + ++P ++A
Sbjct: 1149 IVNDLLDISKIEAGQVDMEFTAVSLNDHLAESVSLLQPMANSQRVIIRTSLSESVPDVVA 1208

Query: 700  DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKP 759
            D RSVKQIALN+LSNAI +TPSGGQI++ST++  +  V++R+RDTG+GM   ELE+AMKP
Sbjct: 1209 DQRSVKQIALNLLSNAIRYTPSGGQIVVSTSYEPSGNVVIRIRDTGIGMNRKELEQAMKP 1268

Query: 760  FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            FGQ+    + RGEGTGLGLPL KAMV+AN  +F I S   +GTL+ I FP
Sbjct: 1269 FGQVGAGPRQRGEGTGLGLPLTKAMVEANRAQFDIVSAAGEGTLVSIAFP 1318



 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 99/557 (17%), Positives = 182/557 (32%), Gaps = 57/557 (10%)

Query: 35  ETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGY 94
           +T  +      H+          +  + +     D+E  F FDP  +  RF W ID  G 
Sbjct: 367 DTADTDARPWEHEQATALPSQPAD-PAKTPNKAGDAE--FRFDPNAKPTRFVWKIDRGGA 423

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEG 154
             E+S E    +G  A  +IG +  D++++ ++DP++ I + L R++TW GKT  WPI+G
Sbjct: 424 FSEVSAEFAAAVGPNAADIIGRKFPDIANVFNLDPDHVIIEALNRRDTWSGKTVFWPIQG 483

Query: 155 TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS--------- 205
           TNL  P+DLAALP Y+R+R+F GFRGFGIV       DP A+G  L              
Sbjct: 484 TNLVTPVDLAALPTYTRDRQFDGFRGFGIVRSGETRTDPEAIGLALSPGAPVSTSPHQDT 543

Query: 206 -HLHEIKKGHSSVEKEKYDIFSQQSPPPHLR----------------MKNKVSSLTEYYA 248
               E  +          D  +++      R                  +   S      
Sbjct: 544 DAEAETDQAELLDIDGAVDAETEEDLADLARLDGADPATIGHSDAPDAPDVQDSEVPSAE 603

Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
              +  ++   P   S + +  + +        +   +     ++ NS +  +  + R  
Sbjct: 604 TVTESPESADAPEDASTDVADADIDADDPFRGEKPAIRLVETPMRRNSDKVIDLQTRRER 663

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVD---------- 358
            +  +     +    E   +           +     P F         D          
Sbjct: 664 SARESLSAGEQAAFREIGARLSDAGGSDDKADETGEPPRFGKRQPPLEADSDVRDIEVDF 723

Query: 359 ---DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
                   G  S      +  + +          D +  AA A   T   +     A   
Sbjct: 724 DGKAHTADGIRSAGDAVSRDDEASFEDDARADLEDSSATAAEASEQTTGIDAARDEASAT 783

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
                  +  E+ P              ++ M   +    S+++A    + +   +  ++
Sbjct: 784 DERSTEGREAEDAPVPATPWPSAFALPPRQVMHAGLN--ASLIDAIPSPLLVHAAD-TLI 840

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
             N    +L GY   + L           + +    +L E  S D  Q  +        +
Sbjct: 841 HANPEFLELTGYGSLEAL-----------SEAGGLDHLLE-RSGDDGQLEDGSLTVRRGD 888

Query: 536 EKLLSLRIIIKKLPFSS 552
                +   ++ + +  
Sbjct: 889 GASRKVSARLRSVNWGD 905


>gi|34498703|ref|NP_902918.1| hypothetical protein CV_3248 [Chromobacterium violaceum ATCC 12472]
 gi|34332873|gb|AAQ60912.2| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472]
          Length = 1480

 Score =  459 bits (1180), Expect = e-126,   Method: Composition-based stats.
 Identities = 133/758 (17%), Positives = 265/758 (34%), Gaps = 68/758 (8%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            +DA   +   +      +G    ++IG++   ++        + I   +  + +W G+  
Sbjct: 388  VDAEDRVTYANPAYTALMGYSRDELIGIQANQLAPGADQAERDIIKQKILTEGSWSGELA 447

Query: 149  LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                +G +  +P+  +A  ++ +     G+    +V             + L +K   L 
Sbjct: 448  RLDSQGRS--IPVYASAAALHDQAGTLEGY----VVTYAD--------LRPLQEKSLALA 493

Query: 209  EIKKGHSSVEKEKYDIFSQQSPPP----HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
            E +  + +V     D      P        R  +++   ++    K  +          +
Sbjct: 494  ESQARYQTVLDHAADAVFIADPAGRYLYANRQASQLLGYSQQELLKLSIADITPPEDAGN 553

Query: 265  EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR----NHPSLSAYFDEGEN 320
               +         +      K++  G +                     +     +E   
Sbjct: 554  AARAFQSLLAGSHVTAELLLKRKDGGQVPVEINAIQLPDGTFYGACRDIAERKRTEEEIR 613

Query: 321  LTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
                 V++ P    +      + Y N +F+  T Y   + I    G    L A   +  +
Sbjct: 614  KLSLVVEQSPESIMITDRQARIEYVNDAFVRKTGYSPDEVI----GRDPSLLASGKTPKS 669

Query: 380  AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
              + +     D             +      L           +         ++ +  +
Sbjct: 670  TYEDLWRQLQDGQSWKGEFHN---RCKDGRELVELARIAPIREKDGRISHYLALQEDITE 726

Query: 440  TRINKRKMEIEVMQLCSIL---------------------EATSDGIAIINRE-GIILST 477
             +    +++    +L  ++                     ++   GI  I+ + G  +  
Sbjct: 727  KKRLGLELDNYRHRLEELVEARTAEVREAHARLQITQFAMDSVGIGIQWIDPDSGRFVYA 786

Query: 478  NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
            NR  ++L GY  +++L    +           +  +  +      Q   +I    T+   
Sbjct: 787  NRHTAELLGYSEQEMLTLTVSDIDPAFPLPAFHATMARLRQSRYTQFQSQI---ETRGGV 843

Query: 538  LLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
             + + I +  +   +         + DIS  K+ +  L  AK+ AEK +  K+ F+A +S
Sbjct: 844  PIPVEITLYYMEGDADAPARVIAFLTDISRRKETEQTLVQAKEAAEKANLAKTAFVANMS 903

Query: 594  HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
            HEIRTP+ AI+G   ++   R       +     + IDRS   +L+++ND+LD+SK + G
Sbjct: 904  HEIRTPMNAILGMVYLLSQGRLSA----QQQHQLDTIDRSARHLLNLINDILDLSKADVG 959

Query: 654  KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713
            K+ L      L    ++ + LV   A  K + +          +  D   + Q  LN+LS
Sbjct: 960  KLQLALSDFDLARLPADVMGLVADQAKAKGLQLSLQADAGPLPVRGDATRLTQCLLNLLS 1019

Query: 714  NAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
            NA+ FT  G +I IS +    +E        VRDTG+G+      +    F Q   S   
Sbjct: 1020 NAVKFTERG-RIAISLSIDGEDEYGVLARFEVRDTGIGIPAEVQPRLFGAFEQADASTTR 1078

Query: 770  RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
            R  GTGLGL + K + +   G   + S P +G+L    
Sbjct: 1079 RYGGTGLGLAITKRLAELMGGAVGVESAPGQGSLFWFT 1116



 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 70/641 (10%), Positives = 174/641 (27%), Gaps = 62/641 (9%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTT 148
           D  G     +      +G       G+R  D+      D        +L        +  
Sbjct: 17  DLDGRYLLANLGSQTLLGLPRVPEAGLRDHDLFPEAFADRLAAADRQVLSSGRPQEFEVL 76

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           +  ++    Y+ +     P+ + + E   +   GI           +     D+    + 
Sbjct: 77  MEHLDPPRTYLSLKF---PLRAPSGEI--YAIGGIATDISERKRLESQISEHDELLRDMS 131

Query: 209 EIKKGHSSVEKEKYDIFSQQSP------PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
            I +             +  +        P     N    L+ Y     + ++      +
Sbjct: 132 AIARIGGWWFDPISGQGNWTAEVARIHDLPEAAPVNVEDGLSYYSGESRERIEAAVQAAI 191

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE---SFEYLSHRNHPSLSAYFDEGE 319
              +    E E   +    +   +        + +            +         E E
Sbjct: 192 RDGKPYDLELELI-SATGRRKWVRTLGRPQVRDGRVVKVRGAMQDISDRKQAELALRESE 250

Query: 320 NLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
            L    V+  P    ++         +  +L     +  D +      S     P++   
Sbjct: 251 ELLHLFVEHAPAALAMFDRQMRYLAVSRRWLRDYGLEGRDILGQ----SHYAVFPEIPP- 305

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
            A + V     D   +     L       +        P+ + +     +          
Sbjct: 306 -AWRAVHRRGLDGEVVREEEALFIRANGDQQWQKWEVRPWRRRDGTIGGILIY------T 358

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
           +    +++ E +   L   L   +  I +++ E  +   N A + L GY  ++++     
Sbjct: 359 EDITARKQAEKDKHWLAEALNQAAQPILMVDAEDRVTYANPAYTALMGYSRDELIGIQAN 418

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCY 554
                   +  +    +IL+                + + + +      L         Y
Sbjct: 419 QLAPGADQAERDIIKQKILTEGSWSG---ELARLDSQGRSIPVYASAAALHDQAGTLEGY 475

Query: 555 SLTMHDIS--EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP----LTA------ 602
            +T  D+   + K      S A+     + +  + F+A        P    L A      
Sbjct: 476 VVTYADLRPLQEKSLALAESQARYQTVLDHAADAVFIAD-------PAGRYLYANRQASQ 528

Query: 603 IIGFSEV-IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           ++G+S+  +       +  P     A    +S      +  +LL + + + G++ +    
Sbjct: 529 LLGYSQQELLKLSIADITPPEDAGNAARAFQSLLAGSHVTAELL-LKRKDGGQVPVEINA 587

Query: 662 VSLDE-----AVSEAISLVQLYANEKRILIRTSFANNIPRI 697
           + L +     A  +     +     +++ +    +     I
Sbjct: 588 IQLPDGTFYGACRDIAERKRTEEEIRKLSLVVEQSPESIMI 628



 Score =  103 bits (258), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 36/388 (9%), Positives = 93/388 (23%), Gaps = 14/388 (3%)

Query: 204 FSHLHEIKKGHSSVEKEKYDIF----SQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
              + +       V+             Q+     R+        + +            
Sbjct: 2   LQSILDNSSAAIFVKDLDGRYLLANLGSQTLLGLPRVPEAGLRDHDLFPEAFADRLAAAD 61

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
             + S       +     ++    T       L+  S E +         S     +   
Sbjct: 62  RQVLSSGRPQEFEVLMEHLD-PPRTYLSLKFPLRAPSGEIYAIGGIATDISERKRLESQI 120

Query: 320 NLTPETVDKCPIPFFV--YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
           +   E +        +  +    +         + +   + +         L      S 
Sbjct: 121 SEHDELLRDMSAIARIGGWWFDPISGQGNWTAEVARIHDLPEAAPVNVEDGLSYYSGESR 180

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
                 V     D         L  I          T    +  +     +   G   + 
Sbjct: 181 ERIEAAVQAAIRDGKPYDLELEL--ISATGRRKWVRTLGRPQVRD--GRVVKVRGAMQDI 236

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
            D +  +  +      L   +E     +A+ +R+   L+ +R   + +G    DIL +  
Sbjct: 237 SDRKQAELALRESEELLHLFVEHAPAALAMFDRQMRYLAVSRRWLRDYGLEGRDILGQSH 296

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYS 555
                   P          L  ++ +  E + + +  +++     +   +          
Sbjct: 297 YAVF-PEIPPAWRAVHRRGLDGEVVREEEALFIRANGDQQWQKWEVRPWRRRDGTIGGIL 355

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESS 583
           +   DI+  KQ +       +   + + 
Sbjct: 356 IYTEDITARKQAEKDKHWLAEALNQAAQ 383



 Score = 88.9 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 37/439 (8%), Positives = 105/439 (23%), Gaps = 53/439 (12%)

Query: 46  HDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPI-PRTVRFTWNIDAHGYLKEISEELPK 104
             + E    T  +   +   +   +E+   +  +        +  D  G     + +  +
Sbjct: 469 AGTLEGYVVTYADLRPLQEKSLALAESQARYQTVLDHAADAVFIADPAGRYLYANRQASQ 528

Query: 105 TIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLA 164
            +G    +++ + + D++              L   +    +  L   +G    VP+++ 
Sbjct: 529 LLGYSQQELLKLSIADITPPEDAGNAARAFQSLLAGSHVTAELLLKRKDGGQ--VPVEIN 586

Query: 165 ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDI 224
           A+ +   +  F G                    ++L    S + E       +   +  I
Sbjct: 587 AIQL--PDGTFYGA-----CRDIAERKRTEEEIRKL----SLVVEQSPESIMITDRQARI 635

Query: 225 FSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTI--NL 280
                          ++V              K+    L    +     + +FH    + 
Sbjct: 636 EYVNDAFVRKTGYSPDEVIGRDPSLLASGKTPKSTYEDLWRQLQDGQSWKGEFHNRCKDG 695

Query: 281 NQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC----------- 329
            +  +      ++        YL+ +   +         +     +++            
Sbjct: 696 RELVELARIAPIREKDGRISHYLALQEDITEKKRLGLELDNYRHRLEELVEARTAEVREA 755

Query: 330 ------------PIPFFVY----SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
                        +   +       G   YAN     L  Y   + +     L+     P
Sbjct: 756 HARLQITQFAMDSVGIGIQWIDPDSGRFVYANRHTAELLGYSEQEML----TLTVSDIDP 811

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
                     +   R  R     +     I+      + +    +               
Sbjct: 812 AFPLPAFHATMARLRQSR----YTQFQSQIETRGGVPIPVEITLYYMEGDADAPARVIAF 867

Query: 434 EPEDVDTRINKRKMEIEVM 452
             +    +  ++ +     
Sbjct: 868 LTDISRRKETEQTLVQAKE 886


>gi|298676132|ref|YP_003727881.1| multi-sensor signal transduction histidine kinase [Methanohalobium
           evestigatum Z-7303]
 gi|298289120|gb|ADI75085.1| multi-sensor signal transduction histidine kinase [Methanohalobium
           evestigatum Z-7303]
          Length = 995

 Score =  457 bits (1175), Expect = e-126,   Method: Composition-based stats.
 Identities = 145/760 (19%), Positives = 278/760 (36%), Gaps = 54/760 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD----ILHIDPNNHIGDLLKRQN 141
            + +D+  ++  I+E +    G     +IG     + +     +  D +     LL   +
Sbjct: 259 IFILDSCFHVVWINEPMEDYFGIDREDIIGKDKRQLVEDKLKHIFEDSDEFANRLLATYD 318

Query: 142 ----TWYGKTTLWPIEGTNLYVPIDLAALPIYS---RNREFSGFRGFGIVHVNRVDNDPR 194
                   +  + P         ++  + PI S          +      +         
Sbjct: 319 DNSYIENFECHVLPDSNREER-WLEHWSQPIKSGLYAGGRIEHY------YDITYRKIIE 371

Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL----------RMKNKVSSLT 244
              +        + +      +       I         +          R  + V    
Sbjct: 372 QDLRTERDFIEKVADTSPICITKVDRNGYIVYANHAAEMVLGLSKSKIQERTYDDVKWKI 431

Query: 245 EYYAHKDDVLKTEKYPLLTS-EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303
             +       +   + L+    E     +      +  +         + ++       +
Sbjct: 432 TDFDGNYYPQEELPFELVQKYLEPVYDVRHAIQWPDGQRKLLSINAAPIFDDYNRFDGLV 491

Query: 304 S----HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVD 358
           +                E E      +D  PI  FV +  G     NP+   +T Y   +
Sbjct: 492 AAIENISEKIEKERELKESEKKFRNYIDHSPIGIFVANKDGYYVDVNPAASSITGYTRDE 551

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
            +     ++ +   P+       +       +      S  L  I    E    +     
Sbjct: 552 LL----SMNLIDLHPQDVLEQIYQAYNYLVENGKT---SVELPFITKKSELRYFILDAVK 604

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
              ++        G   +  + +  + +++    +  +++E  +D I   + +G IL  N
Sbjct: 605 LSDDK------YLGFTTDITERKKVEDELKESEGRFRTVIEQAADAIIAHDFDGNILYVN 658

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
                  GY  +++L                     + LS     +    T+   K+   
Sbjct: 659 DLTCDNLGYTKDELLSMNLADIDPNIDTYEPRKRYWDKLS--YHSSYLIETVNRRKDGSE 716

Query: 539 LSLR--IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
             +   + +  L         + DI+  KQ + KL +AK  AE  +  KS+ LA VSHE+
Sbjct: 717 FPVEVKMTLMNLSGKPVILGFVRDITVRKQAEEKLINAKLEAEAANQAKSELLANVSHEL 776

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTPLT+IIGFS+VI  ++ G L N     Y + I +SG  +LD++ND+LD++KIESGK+ 
Sbjct: 777 RTPLTSIIGFSDVILKRKVGDL-NDNQTRYLDKIHKSGQHLLDLINDILDLAKIESGKLE 835

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716
           LH E +S+   +++  S +  +A++K + + +    NI  I AD   ++QI  N++ NAI
Sbjct: 836 LHREKISIPALLNDLESKLYPFASKKGLSLDSEIDPNIEYIYADEIKLRQILYNLIYNAI 895

Query: 717 HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
            FT  G  + ++    ++      V DTG+G+   + ++  + F Q+      R  GTGL
Sbjct: 896 KFTNKGS-VTVTVRQKNDAY-QFSVIDTGIGIPEDKQDEIFESFRQLDTGASRRYAGTGL 953

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           GL L K +V+ + G+ ++ S  +KGT      P   +  P
Sbjct: 954 GLALVKRLVEIHGGQIWVESEESKGTTFTFTIPSTKSELP 993



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 56/148 (37%), Gaps = 13/148 (8%)

Query: 442 INKRKMEIEVMQLCSI----LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
            ++ K+  +  +  +I    L+++  GI I++    ++  N  +   FG   EDI+ K  
Sbjct: 232 ESENKLIEKEERHRTIVDDVLDSSKVGIFILDSCFHVVWINEPMEDYFGIDREDIIGKDK 291

Query: 498 TVFLE-------QNTPSVMNHYLTEILSLDLRQTLE-KITLGSTKEEKLL-SLRIIIKKL 548
              +E       +++    N  L         +  E  +   S +EE+ L      IK  
Sbjct: 292 RQLVEDKLKHIFEDSDEFANRLLATYDDNSYIENFECHVLPDSNREERWLEHWSQPIKSG 351

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKK 576
            ++       +DI+  K  +  L   + 
Sbjct: 352 LYAGGRIEHYYDITYRKIIEQDLRTERD 379


>gi|307947441|ref|ZP_07662774.1| PAS/PAC sensor signal transduction histidine kinase [Roseibium sp.
            TrichSKD4]
 gi|307769259|gb|EFO28487.1| PAS/PAC sensor signal transduction histidine kinase [Roseibium sp.
            TrichSKD4]
          Length = 1749

 Score =  452 bits (1164), Expect = e-125,   Method: Composition-based stats.
 Identities = 190/638 (29%), Positives = 322/638 (50%), Gaps = 30/638 (4%)

Query: 185  HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244
             V + +++  A        F    +       V++ + ++   +    H     +  ++ 
Sbjct: 1122 QVGQSESETDADDVVSGDNFETDQDNDAPIDPVDEAEDELDFFKETAAHKETDEEAEAVA 1181

Query: 245  EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
            +    +   L + +  L+  + S+L   +    +   +   +      + +     E   
Sbjct: 1182 DQDTAEIIPLVSARPHLVPVDTSNLSRPD----LAAFKTIAEALGARFEGDIAGFDELDM 1237

Query: 305  HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364
                  L    +    + P+ +D+ PI   +    ++ +AN + L +  Y +   +  AG
Sbjct: 1238 LDPEGILPPETEPSGPIDPDLLDRLPIGIAIARDRDVLFANETLLSVLGYPTHRHLTEAG 1297

Query: 365  GLSTLLDAPKLS--------DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
            GL  L               +      +   R+D + +   AR+H++ WN    L ++ +
Sbjct: 1298 GLEALFAEEDEDSFPDAEGMEGTVDGTLKARRADGSLLPVDARMHSVPWNGGQGLMISIV 1357

Query: 417  PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476
            P         ++                +  + ++ +L +ILE  +DG+ +++R G+I+ 
Sbjct: 1358 PRAAEAVASGSVSS-----------TELQAAQTQIAELDTILETATDGVLVLDRNGVIIK 1406

Query: 477  TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTK 534
             NR+   LF     D++  P   +L   +      YL  ++   +   L   +  LG  K
Sbjct: 1407 ANRSAEALFNANRADMIGVPLFDYLAPESHRGATDYLDGLVRNGVASVLNDGREVLGLLK 1466

Query: 535  EEKLLSLRIIIKKLPFSSC---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
               L+ L + I ++        +   + DI++WK  + +L+ AK+ AE  +S KSDFLA+
Sbjct: 1467 SGGLIPLFMTIGRINHDGEDRKFCAVLRDITQWKTAEEELTQAKRQAENANSQKSDFLAK 1526

Query: 592  VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
            +SHEIRTPL AIIGFSEV+ ++RFG +GN RY EY   I  SG+ ++ ++NDLLD+SKIE
Sbjct: 1527 ISHEIRTPLNAIIGFSEVMMDERFGEIGNERYKEYLKDIRTSGSHIMSLINDLLDLSKIE 1586

Query: 652  SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
            +GK++L F  VS+ + V+E ++++Q  AN +R++IR S  +++P ++AD RS++QI LN+
Sbjct: 1587 AGKLDLQFTAVSIKDIVNECVAIMQPQANRERVIIRASLPDSVPNVVADPRSLRQIVLNL 1646

Query: 712  LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
            LSNAI F  SGGQ I+ST      EV+LRVRDTG GM+  +L  A++PF Q+       G
Sbjct: 1647 LSNAIKFNKSGGQAIVSTAFEDTGEVVLRVRDTGTGMSAKDLSAALEPFRQLH--TARHG 1704

Query: 772  EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             GTGLGLPL KA+V+AN   F I STP +GTL+EI FP
Sbjct: 1705 SGTGLGLPLTKALVEANRASFRIDSTPDQGTLVEISFP 1742



 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 54/271 (19%), Positives = 99/271 (36%), Gaps = 2/271 (0%)

Query: 56  DQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIG 115
             N ++  +      ++ FVF    R VRF W +D       +S+E  +T+G  +  ++G
Sbjct: 347 APNTDASPDPLSSSDDDGFVFQQKRRPVRFAWKMDLEQRFTFVSDEFGQTLGPSSTDILG 406

Query: 116 MRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREF 175
               +V ++  +D    I   L R++TW GKT  WP+ G  + VP+D+AALP + R+R+F
Sbjct: 407 KTWAEVRELYGVDGRAKIAQALDRRDTWSGKTVYWPVSGEAVRVPVDMAALPAFDRDRQF 466

Query: 176 SGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR 235
            G+RGFG+        DP   G  +        E  +  +    +      QQ       
Sbjct: 467 EGYRGFGVCRTADAKEDPD--GVFVPGAVFESAEAIERDTIDTTDADTFTDQQLDADADA 524

Query: 236 MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN 295
             +    +    AH+       +     +E     + +D  T              +   
Sbjct: 525 AGSASDHVETGEAHEVVETIASEGETSANETPPETQSDDTGTAAPLATAATAAAAGIGAM 584

Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
                +  +       +      +    +  
Sbjct: 585 VVGRSDAPASDQDAGETTVNAPDQTEIGDLA 615


>gi|90419932|ref|ZP_01227841.1| signal transduction histidine kinase [Aurantimonas manganoxydans
            SI85-9A1]
 gi|90335973|gb|EAS49721.1| signal transduction histidine kinase [Aurantimonas manganoxydans
            SI85-9A1]
          Length = 1040

 Score =  452 bits (1163), Expect = e-124,   Method: Composition-based stats.
 Identities = 207/725 (28%), Positives = 329/725 (45%), Gaps = 23/725 (3%)

Query: 102  LPKTIGNYAFKMIGMRLCDVSD-ILHIDPNNHIGDLLKRQNT-----WYGKTTLWPIEGT 155
            L +          G R  D        D    I  L +R+ +        +   +   G 
Sbjct: 315  LKRISAEEPPAPFGRRDPDARPTPETSDRAEKIIRLEERRRSKDSHLSQSEEAAFRAIGE 374

Query: 156  NLYVPIDLAAL--PIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH------- 206
             L     +  L   I + +R    F                     L+            
Sbjct: 375  TLGDDDRIGGLEGAIRTASRRIGEFE--DEARDAEPIEVAPDANDDLELIDGPGAICAGD 432

Query: 207  LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
              +    ++    +  DI ++        +   +  +    A  +     +        E
Sbjct: 433  EADEAALNADSGDQPDDIVTEARVSDDTDVSASLPEVPRGIAPAEQPSLPDVTAQAGDNE 492

Query: 267  SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
             +L    +      ++   +       +   +  +               +         
Sbjct: 493  PALAAPVEATVQPADKAAAEPAVTDGADEPADPVDADEDDTDEPELPDHAQLLADLATVY 552

Query: 327  DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
               P+P  V     L Y N  F  LT Y  +  +  AGGL+ L D            V +
Sbjct: 553  GCLPLPVLVQIRETLVYGNREFFDLTGYDDIPALAEAGGLARLFDGDD--RAAGSGEVAI 610

Query: 387  YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
             R     +AA + +        + L M+F      +     +      P   D       
Sbjct: 611  RRVTGETLAARSHMQRSTIAGRSCLVMSFFASPSLSAA--ALRSEPEVPPQGDAAETDAD 668

Query: 447  MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
            +  EV +L ++L A +DG+ +I+REG+I S NRA   LFG   +D   +PF   L   + 
Sbjct: 669  LVAEVEELQAVLSAATDGVVLIDREGMIRSMNRAAHALFGIGADDAAGRPFVTLLAHESQ 728

Query: 507  SVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564
                 ++  + +       +  +  +G   E   + L +   +LP    +   + DIS  
Sbjct: 729  KPTLEHIETLRTASATAPRDDGREVIGRVAEGGFVPLSVSFGRLPEERGWCAVIRDISRA 788

Query: 565  KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
            K+ + +L  A+  AE  S  KS FLA VSHE+RTPL AIIGF++VI  + FGP+GN RY+
Sbjct: 789  KRVEQELIKARSEAEAASLQKSQFLANVSHELRTPLNAIIGFADVIATECFGPIGNERYL 848

Query: 625  EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
            EY + I RSG+ VLD+VNDLLDISKIE+GK+ L FE VSL+E + E ++L+Q  AN +++
Sbjct: 849  EYLDDIKRSGHHVLDLVNDLLDISKIEAGKLELAFEAVSLNEVIGEVVALMQPQANREQV 908

Query: 685  LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744
            ++R++  +++P ++AD RS++QIALN++SNA+ FTP+GGQII+ST+++   +V++R RD+
Sbjct: 909  IVRSNLPSSVPPVVADRRSMRQIALNLVSNAVRFTPAGGQIIVSTSYSPEGDVVVRFRDS 968

Query: 745  GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
            G+GM+  E+E AM PF Q+    + RGEGTGLGLPL KA+ +AN   F + STP +GTL+
Sbjct: 969  GIGMSEDEIEIAMMPFQQVNPGNRRRGEGTGLGLPLTKALAEANRAGFAMSSTPGEGTLV 1028

Query: 805  EIIFP 809
            EI FP
Sbjct: 1029 EISFP 1033



 Score =  195 bits (496), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 82/528 (15%), Positives = 168/528 (31%), Gaps = 23/528 (4%)

Query: 36  TEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDP--IPRTVRFTWNIDAHG 93
           +  ++ ++P             +  S  +T      +   F+P      VRF W ID+ G
Sbjct: 128 SAPAQADSPPAAR-GTRPVLASDFRSYPDTGSAADGSGAPFEPRFDVAPVRFVWRIDSEG 186

Query: 94  YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIE 153
             + +S E    +G     +I  R  +V++   +D +  I  LL +++TW G+T  WP+E
Sbjct: 187 RFRSLSPEFAAAVGPRFADVIDRRFEEVAEEYGLDADGDIRRLLAKRDTWSGRTLEWPVE 246

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
            +   VP++LAALP+Y+R+R F GFRGFGIV +      P A+ +    +          
Sbjct: 247 NSTRRVPVELAALPVYARDRSFDGFRGFGIVRLADAVEAPVAVAQEERVEEVAQERQDLT 306

Query: 214 HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE 273
                +      S + PP     ++  +  T   + + + +   +    + +      +E
Sbjct: 307 LEGGARALLKRISAEEPPAPFGRRDPDARPTPETSDRAEKIIRLEERRRSKDSHLSQSEE 366

Query: 274 DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF 333
                           G L+   + +   +      +  A   E      + ++    P 
Sbjct: 367 AAFRAIGETLGDDDRIGGLEGAIRTASRRIGEFEDEARDAEPIEVAPDANDDLELIDGPG 426

Query: 334 FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393
            + +      A  +    +  +  D +  A        +  L +           S    
Sbjct: 427 AICAGDEADEA--ALNADSGDQPDDIVTEARVSDDTDVSASLPEVPRGIAPAEQPSLPDV 484

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM- 452
            A +            +               +   +     +  +   ++ ++      
Sbjct: 485 TAQAGDNEPALAAPVEATVQPADKAAAEPAVTDGADEPADPVDADEDDTDEPELPDHAQL 544

Query: 453 --QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
              L ++       + +  RE  ++  NR    L GY     L                 
Sbjct: 545 LADLATVYGCLPLPVLVQIRE-TLVYGNREFFDLTGYDDIPAL--------------AEA 589

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM 558
             L  +   D R              + L+ R  +++   +    L M
Sbjct: 590 GGLARLFDGDDRAAGSGEVAIRRVTGETLAARSHMQRSTIAGRSCLVM 637



 Score = 40.0 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/180 (9%), Positives = 46/180 (25%), Gaps = 12/180 (6%)

Query: 47  DSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTI 106
           +   Q +  + + + V+    L +  +   D +         ID  G ++ ++       
Sbjct: 655 EVPPQGDAAETDADLVAEVEELQAVLSAATDGVVL-------IDREGMIRSMNRAAHALF 707

Query: 107 GNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAAL 166
           G  A    G     +       P     + L+  +    +     + G       +   +
Sbjct: 708 GIGADDAAGRPFVTLLAHESQKPTLEHIETLRTASATAPRDDGREVIGRVA----EGGFV 763

Query: 167 PIYSRNREFSGFRGFG-IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF 225
           P+          RG+  ++              +   +       K    +    +    
Sbjct: 764 PLSVSFGRLPEERGWCAVIRDISRAKRVEQELIKARSEAEAASLQKSQFLANVSHELRTP 823


>gi|254415932|ref|ZP_05029689.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196177359|gb|EDX72366.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 1821

 Score =  451 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 153/759 (20%), Positives = 290/759 (38%), Gaps = 57/759 (7%)

Query: 89   IDAH-GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
            ID+  G + + +    K  G    ++I   + D++ +        +      + T++   
Sbjct: 808  IDSETGAIADANWAAVKFYGYSRSQLITKTITDLNCLPLPQVQAEMKRAKLEERTYFVFP 867

Query: 148  TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                  G    V +  +A+ I  R    S      I+H               +++F  +
Sbjct: 868  HRL-ASGEIREVEVYSSAIEIQDRTFLVS------IIHDITERKQAERALHDSEERFRAI 920

Query: 208  HEIKK-GHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLKTEK--YPL 261
             E    G + V     ++                  V    +   H DD  +  +    L
Sbjct: 921  FEQASVGIALVTPSSGELLRVNQRYCEITGYPESELVGRRVQDITHPDDREQNIEYLQQL 980

Query: 262  LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS----HRNHPSLSAYFDE 317
            ++ + S+   ++ +   +            + ++  +    L+      +  +  A   +
Sbjct: 981  MSGKTSTYATEKRYIRNDGQYRWVYISISRVCDSEHKPNYALAVVEDISDRKATEAELRD 1040

Query: 318  GENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEI-------------- 362
             E      ++       V +  G +   N     L  Y   +                  
Sbjct: 1041 SEAKFRAFLESASEAIIVTNAQGEIIVFNAKAEDLFGYNRTEIFGRNIEYLMPPRYHSIH 1100

Query: 363  AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
                +  L  P        + +   R D T       L TIQ      +        +  
Sbjct: 1101 THHRADYLTHPSKRTMGKSQDLYAKRQDGTEFPIEVGLSTIQTKNGTFVIAFLTDITERQ 1160

Query: 423  QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
            Q    + +          +  + ++     +   I+E   +GI + + +G     N+A++
Sbjct: 1161 QAEHEIKRLN--------QKLESQIRETETRYAQIVELAEEGIWVTDVQGNTTYINQAMA 1212

Query: 483  KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
            ++ GY   +IL      FL        +      + L   Q   +     TK    +   
Sbjct: 1213 RMLGYTEVEILGHAIADFLPPGDNRFTSA---SSIPLHPNQVHRQEVELRTKSGNTIWAY 1269

Query: 543  IIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKK-------IAEKESSHKSDFLAR 591
            +    +             ++DI+E KQ + +L  + +          + +  K +FLA 
Sbjct: 1270 MSTSPVLDDQGNLLWSCALVYDITERKQAEKQLRESNERISLANAELARATRLKDEFLAS 1329

Query: 592  VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
            +SHE+RTPL AI+G +E ++ + +G L  P+  +    I++SG  +LD++ND+LD+SKIE
Sbjct: 1330 MSHELRTPLNAILGLAEALQEEVYGSLT-PKQHKSLATIEQSGKHLLDLINDILDLSKIE 1388

Query: 652  SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
            SGKM+L    VS+D     +++ ++  A +K I +    A  +  I  D R ++Q+ +N+
Sbjct: 1389 SGKMSLSVSLVSVDSLCESSLTFIKQQAQQKNIRLEYHIAPGLSEIEVDERRIRQVLVNL 1448

Query: 712  LSNAIHFTPSGGQIIISTTHTSNEE-VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
            LSNA+ FTP GG++ +  T   + E + L V DTG+G+    L+K  KPF Q+ +S   R
Sbjct: 1449 LSNAVKFTPDGGKVSLQVTTDPDGEKLQLSVTDTGIGIAPENLDKLFKPFVQLDSSLSRR 1508

Query: 771  GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
              GTGLGL L + +V+   G   + S   KG+   +  P
Sbjct: 1509 YAGTGLGLALVRRIVELQGGSIALESEVGKGSCFTVNLP 1547



 Score =  178 bits (451), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 57/505 (11%), Positives = 147/505 (29%), Gaps = 27/505 (5%)

Query: 96   KEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL-----KRQNTWYGKTTLW 150
               S    + +G    + I   L + S  +H D    +  L+      + + +  +  L 
Sbjct: 686  VFFSPRWKEMLGYEEDE-IPNHLDEWSKRVHPDDLEWVMGLIQDHFDHKTSYYSSEHRLL 744

Query: 151  PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
              +G+  Y  I      ++    +    R  G            A  +  + +F  + E 
Sbjct: 745  CKDGS--YKWILDRGQALWDDQGKVV--RMVGSHTDISDRKAAEAALRDSEARFRAMFER 800

Query: 211  KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD-----VLKTEKYPLLTSE 265
             K    +   +    +  +           S L        +      ++ E       E
Sbjct: 801  SKAIKLLIDSETGAIADANWAAVKFYGYSRSQLITKTITDLNCLPLPQVQAEMKRAKLEE 860

Query: 266  ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
             +         +  + +         +Q+ +                    + E      
Sbjct: 861  RTYFVFPHRLASGEIREVEVYSSAIEIQDRTFLVSIIHDITERKQAERALHDSEERFRAI 920

Query: 326  VDKCPIPFFVY--SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
             ++  +   +   S G L   N  +  +T Y   + +         +      D+     
Sbjct: 921  FEQASVGIALVTPSSGELLRVNQRYCEITGYPESELVG------RRVQDITHPDDREQNI 974

Query: 384  VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
              L +      +  A       N      +        +   +      +  +  D +  
Sbjct: 975  EYLQQLMSGKTSTYATEKRYIRNDGQYRWVYISISRVCDSEHKPNYALAVVEDISDRKAT 1034

Query: 444  KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            + ++     +  + LE+ S+ I + N +G I+  N     LFGY   +I  +     +  
Sbjct: 1035 EAELRDSEAKFRAFLESASEAIIVTNAQGEIIVFNAKAEDLFGYNRTEIFGRNIEYLMPP 1094

Query: 504  NTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMH 559
               S+  H+  + L+   ++T+   +      ++     + + +  +   +       + 
Sbjct: 1095 RYHSIHTHHRADYLTHPSKRTMGKSQDLYAKRQDGTEFPIEVGLSTIQTKNGTFVIAFLT 1154

Query: 560  DISEWKQEKNKLSHAKKIAEKESSH 584
            DI+E +Q ++++    +  E +   
Sbjct: 1155 DITERQQAEHEIKRLNQKLESQIRE 1179



 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 56/534 (10%), Positives = 136/534 (25%), Gaps = 55/534 (10%)

Query: 86   TWNIDAH-GYLKEISEELPKTIGNYAFKMIGMRLCDV--SDILHIDPNNHIGDLLKRQNT 142
             W+I A    +  +S       G             +           +     L  Q T
Sbjct: 548  VWSISATTDQVLYLSPATETVYGRLVQDFFDHPHLRLGVVHPDDYAQVSPFHQQLLAQGT 607

Query: 143  WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
            +  +  +   +G      +       Y +       R  GI              +  ++
Sbjct: 608  YSLEYRIQRPDGEIR--WLYDRGRVTYDQQGHP--LRLDGIASDITDRKQAEDALRVSEE 663

Query: 203  KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
            ++                K +      P     +  +   +  +       +  +    +
Sbjct: 664  RWHLALRGNSDGIWDWNVKTNDVFFS-PRWKEMLGYEEDEIPNHLDEWSKRVHPDDLEWV 722

Query: 263  TSEESS--------LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS----HRNHPS 310
                             +      + +          L ++  +    +       +  +
Sbjct: 723  MGLIQDHFDHKTSYYSSEHRLLCKDGSYKWILDRGQALWDDQGKVVRMVGSHTDISDRKA 782

Query: 311  LSAYFDEGENLTPETVDKC-PIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
              A   + E       ++   I   + S  G +  AN + +    Y     I        
Sbjct: 783  AEAALRDSEARFRAMFERSKAIKLLIDSETGAIADANWAAVKFYGYSRSQLITKTITDLN 842

Query: 369  LLDAPKLS--------DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
             L  P++         +           +             I+      L         
Sbjct: 843  CLPLPQVQAEMKRAKLEERTYFVFPHRLASGEIREVEVYSSAIEIQDRTFLV-------- 894

Query: 421  ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNR 479
                        I  +  + +  +R +     +  +I E  S GIA++    G +L  N+
Sbjct: 895  -----------SIIHDITERKQAERALHDSEERFRAIFEQASVGIALVTPSSGELLRVNQ 943

Query: 480  AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
               ++ GYP  +++ +        +       YL +++S     T          + +  
Sbjct: 944  RYCEITGYPESELVGRRVQDITHPDDREQNIEYLQQLMS-GKTSTYATEKRYIRNDGQYR 1002

Query: 540  SLRIIIKKLPFS----SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
             + I I ++  S    +     + DIS+ K  + +L  ++          S+ +
Sbjct: 1003 WVYISISRVCDSEHKPNYALAVVEDISDRKATEAELRDSEAKFRAFLESASEAI 1056



 Score =  117 bits (293), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 56/468 (11%), Positives = 132/468 (28%), Gaps = 31/468 (6%)

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV--SSLT 244
            R     R   +RLD   + L ++    S+   +   +           +++      L 
Sbjct: 524 LRTQVALRQNKQRLDSILNALDDVVWSISATTDQVLYLSPATETVYGRLVQDFFDHPHLR 583

Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
               H DD  +   +      + +   +      +              +          
Sbjct: 584 LGVVHPDDYAQVSPFHQQLLAQGTYSLEYRIQRPDGEIRWLYDRGRVTYDQQGHPLRLDG 643

Query: 305 HRNHPSLSAYFDEGENLTPE----TVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDD 359
             +  +     ++   ++ E     +       + ++   N  + +P +  +  Y+  + 
Sbjct: 644 IASDITDRKQAEDALRVSEERWHLALRGNSDGIWDWNVKTNDVFFSPRWKEMLGYEEDEI 703

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
                  S         D+      ++        +  +  H +     +   +      
Sbjct: 704 PNHLDEWSKR----VHPDDLEWVMGLIQDHFDHKTSYYSSEHRLLCKDGSYKWILDRGQA 759

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTN 478
             +   + +   G   +  D +  +  +     +  ++ E +     +I+ E G I   N
Sbjct: 760 LWDDQGKVVRMVGSHTDISDRKAAEAALRDSEARFRAMFERSKAIKLLIDSETGAIADAN 819

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
            A  K +GY    ++ K  T       P V        L              ++ E + 
Sbjct: 820 WAAVKFYGYSRSQLITKTITDLNCLPLPQVQAEMKRAKLEERTYFVFPH--RLASGEIRE 877

Query: 539 LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV---SHE 595
           + +     ++   +     +HDI+E KQ +  L  +++         S  +A V   S E
Sbjct: 878 VEVYSSAIEIQDRTFLVSIIHDITERKQAERALHDSEERFRAIFEQASVGIALVTPSSGE 937

Query: 596 IRTPLTA------IIGFSEVIK-----NQRFGPLGNPRYIEYANYIDR 632
           +   L        I G+ E             P    + IEY   +  
Sbjct: 938 L---LRVNQRYCEITGYPESELVGRRVQDITHPDDREQNIEYLQQLMS 982



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 47/421 (11%), Positives = 109/421 (25%), Gaps = 27/421 (6%)

Query: 174 EFSGFR----GFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS 229
           +F G+R    GF   H N     P A           L      +             Q 
Sbjct: 391 DFGGYRCAWIGFAQ-HDNAKTVRPVAQAGYEKGYVEALQISWGDNQRGTGPTGTAIRTQE 449

Query: 230 P-PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288
           P      + +    L    A +     +   PL+                +     + + 
Sbjct: 450 PRIIQNILTDPSYRLWRDAASQQGYAASIALPLIVEGTCLGALNIYASEPDAFDPAEVRL 509

Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANP 346
              L N+       L             + +      ++      +  S     + Y +P
Sbjct: 510 LTELANDLAYGISAL------RTQVALRQNKQRLDSILNALDDVVWSISATTDQVLYLSP 563

Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
           +   +      D  +       ++     +  +     +L +   +        + IQ  
Sbjct: 564 ATETVYGRLVQDFFDHPHLRLGVVHPDDYAQVSPFHQQLLAQGTYSL------EYRIQRP 617

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
                 +        +Q    +  +GI  +  D +  +  + +   +    L   SDGI 
Sbjct: 618 DGEIRWLYDRGRVTYDQQGHPLRLDGIASDITDRKQAEDALRVSEERWHLALRGNSDGIW 677

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRK--PFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
             N +   +  +    ++ GY  ++I      ++  +  +    +   + +         
Sbjct: 678 DWNVKTNDVFFSPRWKEMLGYEEDEIPNHLDEWSKRVHPDDLEWVMGLIQDHFDH-KTSY 736

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM----HDISEWKQEKNKLSHAKKIAEK 580
                    K+     +    + L       + M     DIS+ K  +  L  ++     
Sbjct: 737 YSSEHRLLCKDGSYKWILDRGQALWDDQGKVVRMVGSHTDISDRKAAEAALRDSEARFRA 796

Query: 581 E 581
            
Sbjct: 797 M 797



 Score = 65.0 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 18/162 (11%), Positives = 46/162 (28%), Gaps = 4/162 (2%)

Query: 86   TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
             W  D  G    I++ + + +G    +++G  + D          +     L        
Sbjct: 1195 IWVTDVQGNTTYINQAMARMLGYTEVEILGHAIADFLPPGDNRFTSASSIPLHPNQVHRQ 1254

Query: 146  KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
            +  L    G    +   ++  P+              +V+            +  +++ S
Sbjct: 1255 EVELRTKSGNT--IWAYMSTSPVLDDQGNL--LWSCALVYDITERKQAEKQLRESNERIS 1310

Query: 206  HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247
              +      + ++ E     S +   P   +     +L E  
Sbjct: 1311 LANAELARATRLKDEFLASMSHELRTPLNAILGLAEALQEEV 1352



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 36/333 (10%), Positives = 93/333 (27%), Gaps = 26/333 (7%)

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
           +++  E    HT  +   TK  +   L+  +                  ++      P T
Sbjct: 46  QTAQAETRLQHTQRVRLETKSLHSDLLEAETAVRG--YEITRRQDFLDRYESAIAQIPVT 103

Query: 326 VDKCPIPFF-----VYSHGNL-------FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
           +++            +    +              L L   K     E    +  L++  
Sbjct: 104 LEQLRQLIAQEHAQAHRLQRIRELATARVSLLQRNLRLVDAKPETATESPEFIDQLVEGK 163

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
           ++ D    +      +++       +L      +                    +     
Sbjct: 164 QVMDQVNDEIQQFQITEQQE---ETQLKQTLDQQRQFTGSILALSAIIGIGGSLLAAYLS 220

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDG-IAIINREGIILSTNRAVSKLFGYPVEDI 492
              +   + + R+      +  +++E   +G + + N E   L  + +     G     +
Sbjct: 221 YRLEHHLQKSDRRWRESEARYRAVVENFPNGAVLLFNHELRYLLADGSGLASVGLSKTLL 280

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
                   L   T + +     ++L+    +T+ +        +++  +  +  K     
Sbjct: 281 EGNTIQECLPPQTCTQLEPLYRQVLAG---ETVTQEMPF---GDRIFIIHGLPLKNQTGE 334

Query: 553 CY--SLTMHDISEWKQEKNKLSHAKKIAEKESS 583
                +   DI+E KQ +  L HA +     S 
Sbjct: 335 IIAGMVVAQDITELKQSEQALYHANRALRTLSE 367



 Score = 41.6 bits (96), Expect = 0.58,   Method: Composition-based stats.
 Identities = 25/284 (8%), Positives = 67/284 (23%), Gaps = 17/284 (5%)

Query: 191 NDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDI--FSQQSPPPHLRMKNKVSSLTEYYA 248
               A       +   + E+     S+ +    +     ++        +++    +   
Sbjct: 108 RQLIAQEHAQAHRLQRIRELATARVSLLQRNLRLVDAKPETATESPEFIDQLVEGKQVMD 167

Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
             +D ++  +      E       +       +        G   +       Y    + 
Sbjct: 168 QVNDEIQQFQITEQQEETQLKQTLDQQRQFTGSILALSAIIGIGGSLLAAYLSYRLEHHL 227

Query: 309 PSLSAYFDEGENLTPETVDKCPIP--FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
                 + E E      V+  P               A+ S L      S   +E     
Sbjct: 228 QKSDRRWRESEARYRAVVENFPNGAVLLFNHELRYLLADGSGLASVGL-SKTLLEGNTIQ 286

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
             L            + V+   +    +    R+  I                  NQ  E
Sbjct: 287 ECLPPQTCTQLEPLYRQVLAGETVTQEMPFGDRIFIIH------------GLPLKNQTGE 334

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470
            +    +  +  + + +++ +      L ++ E     +   + 
Sbjct: 335 IIAGMVVAQDITELKQSEQALYHANRALRTLSECNQALVLATDE 378


>gi|269839224|ref|YP_003323916.1| PAS/PAC sensor hybrid histidine kinase [Thermobaculum terrenum ATCC
            BAA-798]
 gi|269790954|gb|ACZ43094.1| PAS/PAC sensor hybrid histidine kinase [Thermobaculum terrenum ATCC
            BAA-798]
          Length = 1363

 Score =  442 bits (1138), Expect = e-122,   Method: Composition-based stats.
 Identities = 135/746 (18%), Positives = 253/746 (33%), Gaps = 42/746 (5%)

Query: 86   TWNIDAHGYLKE--ISEELPKTIGNYAFKMIG--MRLCDVSDILHIDPNNH-IGDLLKRQ 140
             +            +S    +  G    +++G  + L ++     +      +  +    
Sbjct: 339  VYRRRQDDRWSLEFVSSYAREITGYSDAELLGGKVSLRELVHPEDLPAVTANLRGVSSPG 398

Query: 141  NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRAL---- 196
              +  +  L   +G+  +V      + +        G      +                
Sbjct: 399  QRYRLEYRLRHRDGSLRFVEEYGQCVRVTEGMPLLEGL-----LTDVTDRKHAEQAVQQV 453

Query: 197  GKRLDKKFSHLHE------IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK 250
             +R    F  + E      +             +    SP   L     V+         
Sbjct: 454  QRRYQDIFERISEGIFQTSLDGRLLLANPALARMLGYASPEELLSEVQDVARQIYARPAD 513

Query: 251  DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310
             D             +  L              + +      +                 
Sbjct: 514  RDRYLRIMLEEGEVRDFELEAVRKDGEHIWLSISSRWLLDEARGMRIIEGTCQDITQRKR 573

Query: 311  LSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
                  E   L     D  PI    V + G     NPS   +  Y   + +         
Sbjct: 574  AEEALRESMELFVSAFDHAPIGMALVATDGRWLRVNPSLCRMLGYSERELLG------MT 627

Query: 370  LDAPKLSDNNAIKPVMLYRS-DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
                   D+  +    + +  D               +     A+        +   + +
Sbjct: 628  FQDITHPDDLELDLQHVRQVLDGEIAQYEMEKRYYHKHGSIVWAL-LSVSLVRDLDGQPL 686

Query: 429  PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY- 487
                   +    +  +R +     +   ++EA  D IAI+ ++G +   N A +++ G  
Sbjct: 687  YFVSQIQDITQRKEIERAITESEERYRRLVEAFPDLIAIV-QDGRVAYVNPAGARMLGAK 745

Query: 488  PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT-LEKITLGSTKEEKLLSLRIIIK 546
              ++++ +    F+       +   +  I         +E+  +     E    ++++  
Sbjct: 746  DPQELVGRSVLEFVHPERRGEVAAQIDSIGEGGPPPDSIEERFITLDGREIYAEVKVVPT 805

Query: 547  KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
                     +   DI+E ++   +L  A+  A + S  KS+F+A +SHEIRTPL AIIG 
Sbjct: 806  SHEDRPASQIIARDITESRRVAEELRRARDQAIEASRLKSEFVANMSHEIRTPLNAIIGM 865

Query: 607  SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
            +E++++       + R  E+   I  S   +L I+ND+LD SKIE+GKM L      L  
Sbjct: 866  TELLQDTPL----SERQREFVQTIQTSSQSLLSIINDILDFSKIEAGKMVLEEVDFDLVS 921

Query: 667  AVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI 725
             V     ++   A  K I + T     IPR ++ D   ++Q+ LN+LSNA+ FT  G ++
Sbjct: 922  LVEGTSEMLAGAARGKGISLMTFVDPTIPRTLIGDPARLRQVLLNLLSNAVKFTEQG-EV 980

Query: 726  IIST----THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
            ++         S  E++  VRDTG+G+ +  L K  +PF Q   S   R  GTGLGL ++
Sbjct: 981  LLRVLPHRAADSEVELLFEVRDTGIGIDSAHLGKLFQPFTQADASTTRRYGGTGLGLTIS 1040

Query: 782  KAMVDANMGKFYIFSTPAKGTLIEII 807
            K +V+   G  +  S P  G+     
Sbjct: 1041 KTLVELMGGTIWAESQPGVGSTFRFT 1066


>gi|307150289|ref|YP_003885673.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306980517|gb|ADN12398.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 1093

 Score =  441 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 140/760 (18%), Positives = 270/760 (35%), Gaps = 46/760 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL-KRQNTWY 144
            W  +  G     S+     +G    +       +V      +          +  N W 
Sbjct: 211 IWICEPDGRNIYASDSFLNLVGMTQEQCSNFGWGEVLHPDDAEATIVAWQECSQSGNFWD 270

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            +     I+G   + PI    +P+     E   + G  +           A  +  + + 
Sbjct: 271 REHRFRGIDGN--WHPILARGVPVRDEKGELLWWAGINL--DISSLKQTEAKLRESEAQL 326

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSP---PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
            +L +       +   +                 ++         + H DD         
Sbjct: 327 RNLADSAPVLIWMNNAEGGCEFVNKAYLKFFGESLEEIQGFGWSIHLHPDDAQPYLSAYE 386

Query: 262 LT-SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP----SLSAYFD 316
              +E+     Q      +              +++ +   Y+   +        S    
Sbjct: 387 QAFNEQKPFRAQARIKRADGQYRWLDSRATPQFSSTGQFLGYIGSSSDISEIKEASEALR 446

Query: 317 EGENLTPETVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
           E E       D  P+  ++        + N  +L          ++   G + LL     
Sbjct: 447 ESEQRFKLLADNVPVLIWMDDEFQHRRFVNARYLQFAGISPEMLVQ---GWTDLLHPEDA 503

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
                     +                ++ +         I   +       +   G + 
Sbjct: 504 QQYLLKYKQAIAHKSEYRAVV-----RLRRHDGVYRWFEVIGLPRFEGDS-FVGYLGCKL 557

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAII-----NREGIILSTNRAVSKLFGYPVE 490
           +  + +  +  ++    +  ++     D + +      ++ G ++  N   SK  GY  E
Sbjct: 558 DITERKQAEEALQQREQRFSNLFNGMEDWVLVYHLTEEDQPGKLIEVNEQASKKLGYSRE 617

Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK--L 548
           ++L       +   + +        +  L   + +   ++  TKE + + + +      L
Sbjct: 618 ELLSMSVKDIINPASVNPE----ASLKKLQSAKHIVVESVHITKEGQEIPVEVSATLFTL 673

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSH-------AKKIAEKESSHKSDFLARVSHEIRTPLT 601
                      DI+E KQ + +          A++ AE  +  K +FLA +SHE+R+PL 
Sbjct: 674 NGLPTVQAICRDITERKQIEQEREQLLIREQAAREAAESANRIKDEFLAVLSHELRSPLN 733

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
            I+G+++++KN     L  P   +    I+R+  L  +++ DLLD+S+I  GK+NL+   
Sbjct: 734 PILGWAQMLKN---YELDQPTTQKALCIIERNARLQAELIEDLLDVSRILRGKLNLNTTS 790

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           VSL   +  A+  V+L A  K I +RT     + R+L D   ++Q+  N+LSNA+ FTPS
Sbjct: 791 VSLVVVIEAALETVRLAAQAKSIELRTQLETPVGRVLGDAARLQQVVWNLLSNAVKFTPS 850

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           GGQ+ I         V +RV+DTG G+T   L      F Q  +S   +  G GLGL +A
Sbjct: 851 GGQVEIELEQIHGG-VEIRVKDTGKGITPEFLPYIFDYFRQADSSTTRKFGGLGLGLAIA 909

Query: 782 KAMVDANMGKFYIFS-TPAKGTLIEIIFPLYDTSHPHDCI 820
           + +V+ + GK +  S    +G    +  PL     P+D +
Sbjct: 910 RHLVELHGGKIWAESLGENQGATFIVNLPLLPQEFPNDTL 949



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 20/158 (12%), Positives = 43/158 (27%), Gaps = 6/158 (3%)

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
           E+     I       + ++  + +      +I E    GI I   +G  +  + +   L 
Sbjct: 172 ESDNLLAIIRNISQWKRSEAALRLNERLYRAIGETIDYGIWICEPDGRNIYASDSFLNLV 231

Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
           G   E      +   L  +          E          ++       +     +    
Sbjct: 232 GMTQEQCSNFGWGEVLHPDDAEATIVAWQECSQSGN--FWDREHRFRGIDGNWHPILARG 289

Query: 546 KKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAE 579
             +         ++    DIS  KQ + KL  ++    
Sbjct: 290 VPVRDEKGELLWWAGINLDISSLKQTEAKLRESEAQLR 327


>gi|295134137|ref|YP_003584813.1| two-component system sensor histidine kinase/response regulator
            hybrid [Zunongwangia profunda SM-A87]
 gi|294982152|gb|ADF52617.1| two-component system sensor histidine kinase/response regulator
            hybrid [Zunongwangia profunda SM-A87]
          Length = 1567

 Score =  439 bits (1129), Expect = e-120,   Method: Composition-based stats.
 Identities = 143/784 (18%), Positives = 292/784 (37%), Gaps = 56/784 (7%)

Query: 60   ESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLC 119
            E+ S  N    ++ F + P    +     +   G    ++  L K IG    +++ M   
Sbjct: 398  EAESFKNASQFKSAFDYSPNGMAL-----VSLDGKWVNVNRNLSKMIGYTQEELLEMSFM 452

Query: 120  DVSDILHIDPNNHIGDLLKRQ--NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSG 177
            DV+    +D +  +   L     +T+  +      EG  L+  + ++       N +   
Sbjct: 453  DVTYHEDLDKDLKLLSKLMAGEIDTYNMEKRYIHKEGHLLWGLLTVSLQ--KDENGKPLY 510

Query: 178  FRGFGIVHVNRVDNDPRA----LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH 233
            F     ++      + +       + L        ++    S ++               
Sbjct: 511  F--ISQINDITAAKEAQENINKSYRELQNMMDATTQVSIIESDLDGVIKKFNKGAENFFG 568

Query: 234  LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHT---------------- 277
             + +  +     +  H    +K  +  L       +   + F                  
Sbjct: 569  YKAEEMIEKEKFFIFHDKQEIKEREIELSKKYGEEIKGFDVFTAGPKIKDYESLEWTYIR 628

Query: 278  INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE----TVDKCPIPF 333
             N  ++  +     ++N+      Y+      S      E    + +     ++      
Sbjct: 629  KNGERFPVQLVITAIKNSEGVITGYVGVATDISQLKAIQEELKKSEQRWQFALEGSGDGI 688

Query: 334  FVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
            + +    N  + +     +  ++  DD+         +    L  +              
Sbjct: 689  WDWFVDSNTQFLSLRAKEMLGFEETDDLTSVEEWDKRIHPKDLEKSEKALQDYFT---GK 745

Query: 393  CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
                         + E    +      +  +  + +   G + +  D +I +RK++   +
Sbjct: 746  LPIYHVEKRIKCKDGEYKWILDRGKVVEWTEDKKPLRMIGTQSDITDRKIAERKIKENEV 805

Query: 453  QLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
            +  S+ E +  GI +I+   G  +  N+++    GY  E+     +   + +    +++ 
Sbjct: 806  RFRSLYELSPIGIGLIDVENGTFIEANQSLITSSGYTKEEFTGISYRKIVPKEFIPLVSD 865

Query: 512  YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---YSLTMHDISEWKQEK 568
               +++  +  +  EK  +   K+       +   K+  ++       T+ DI+  K+ +
Sbjct: 866  KFKKVVLNEKVEAFEKSFI--KKDGTTFPALVNGAKIKDTNGKDIILATIQDITRRKEME 923

Query: 569  NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
            N L  AK  AE  S  KS+FLA +SHEIRTPL  +IGF++++         N    +Y  
Sbjct: 924  NSLVEAKLKAEAASKSKSEFLANMSHEIRTPLNGVIGFTDLLMKTEL----NTSQKQYME 979

Query: 629  YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
             +  S N +LD++ND+LD SKIE+GK+ L  E +++ E   + I +V+  A+EK + +  
Sbjct: 980  TVYNSANTLLDLINDILDFSKIEAGKLELSVEKINIIELCGQTIDVVKHKAHEKGLEVLL 1039

Query: 689  SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-----TSNEEVILRVR 742
            + +  + R I  D   ++QI  N+L NA+ FT  G +I +             E    VR
Sbjct: 1040 NISQKVDRYIYGDSVRIRQILTNLLGNAVKFTNKG-EIELRIEAGNKNTEHQREYTFIVR 1098

Query: 743  DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
            DTG+G+    LE+  K F Q  +S   +  GTGLGL ++  ++     K  + S P  G+
Sbjct: 1099 DTGIGIAPQNLERIFKAFDQEDSSTTRKYGGTGLGLTISNKLLYLMNSKLDVQSEPGIGS 1158

Query: 803  LIEI 806
                
Sbjct: 1159 SFSF 1162



 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 34/312 (10%), Positives = 99/312 (31%), Gaps = 18/312 (5%)

Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN----LTPETVDKCPIPFFVYS--HGNL 341
            FG  +  +  +          +     +           +  D  P+   +       +
Sbjct: 239 VFGNAEQEAGRTIRVYGAFQDITEQKLKENELKLTQSRFRDIFDNSPLGIILIDPKTNEV 298

Query: 342 FYANPSFLLLTKYKSV--DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399
           ++AN S   +   +S+   +I+     + + +     D   I                  
Sbjct: 299 YHANESAKKIFGLESLSSQEIQKFSFQNQIFEE----DFELISEKRKKLLQGKFDNYRIE 354

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459
            +    +    + +         +            +    ++ + +      Q  S  +
Sbjct: 355 -YRFYKDHGRIIWLQSFTSLLRAEDGSPRLIIAQVEDITLRKLLEAESFKNASQFKSAFD 413

Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL 519
            + +G+A+++ +G  ++ NR +SK+ GY  E++L   F               L+++++ 
Sbjct: 414 YSPNGMALVSLDGKWVNVNRNLSKMIGYTQEELLEMSFMDVTYHEDLDKDLKLLSKLMAG 473

Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAK 575
           ++  T         KE  LL   + +      +     +   ++DI+  K+ +  ++ + 
Sbjct: 474 EID-TYNMEKRYIHKEGHLLWGLLTVSLQKDENGKPLYFISQINDITAAKEAQENINKSY 532

Query: 576 KIAEKESSHKSD 587
           +  +      + 
Sbjct: 533 RELQNMMDATTQ 544


>gi|220925051|ref|YP_002500353.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium nodulans ORS 2060]
 gi|219949658|gb|ACL60050.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium nodulans ORS 2060]
          Length = 969

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 176/635 (27%), Positives = 308/635 (48%), Gaps = 20/635 (3%)

Query: 181 FGIVHVNRVDNDPRALGKRLDKKFSH---LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK 237
           FG+      D    A     ++               +    E       ++ P  ++  
Sbjct: 342 FGLGWTFCSDPADEAGEPASEEVPPREIPASPPPGPDAPGPGEAAAAAPSEAAPEAVKAP 401

Query: 238 NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297
                           L   ++        +L  +       ++   +    G  +    
Sbjct: 402 ESAPEPAGRRPLAASQLSLNEHAAFREIARALGARFAGDPPGMDPAAEGADDGAPRRGGA 461

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSV 357
            +    +              E+ +   +D+ P+   V+   ++ +AN   L L  Y + 
Sbjct: 462 VTPFRGAAAPARQAGREPAGAEDPSARILDRLPLGVLVHRGDDVLFANRRLLGLAGYGTA 521

Query: 358 DDIEIAGGLSTLL---DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
           +D+  AGG   L    D   L    A  PV L   +   +  +  L T++W+   +  + 
Sbjct: 522 EDLSQAGGAGALFKGRDPASLPPTEAGYPVCLATREGGTLPVAVTLTTVEWSGAPASLLL 581

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII 474
                 A+             +     ++  + +  + ++ ++L++ +DG+  ++  G I
Sbjct: 582 LRRLPDADPA----------QDLAAAELDLARQQANLREIEAVLDSMTDGVVTLDGSGRI 631

Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
           L  N+    LFG+   ++  + F++    ++   +   L    S +         +G  +
Sbjct: 632 LDFNKGAKALFGHEPREVTGEDFSLLFTPDSRPAVQAALQRARSGEPASI---EAIGERR 688

Query: 535 EEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
           E  +L+L +       +  +S  + D++  ++ + +L  AK+ AE  +S KSDFLA +SH
Sbjct: 689 EG-ILALTVAPIAGEGTRRFSALLRDVTAARRTEAELLRAKRAAEAANSQKSDFLATISH 747

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           EIRTPL AI+GF+EV+  ++FGP+GN RY +Y   I  SG  V+ +V DLLD++KIE+G 
Sbjct: 748 EIRTPLNAILGFTEVMMEEQFGPIGNERYRDYLRDIRTSGEHVVSLVTDLLDLAKIEAGH 807

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714
           ++L F  V+L++ V  ++SL+Q  A  +R+++RTSFA+ +  +LAD+RS++Q ALN+++N
Sbjct: 808 LDLSFTGVALNDLVGASVSLMQPQAARQRVVVRTSFASGLKPVLADMRSMRQAALNLIAN 867

Query: 715 AIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           AI FT +GGQ+I+ST  T    V LRVRDTG+GMT  E+E A++PF Q+  +Q  RG GT
Sbjct: 868 AIKFTDAGGQVIVSTAMTDRGGVALRVRDTGIGMTPDEIETALQPFRQVATAQNRRGRGT 927

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GLGLPL KA+V+AN G   + S   +GTL+E++FP
Sbjct: 928 GLGLPLTKALVEANRGTLRVTSRKHEGTLVEVLFP 962



 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 65/415 (15%), Positives = 121/415 (29%), Gaps = 52/415 (12%)

Query: 83  VRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNT 142
           +RF W  DA G L E +  L   +G      +G    ++     +  ++ +   L+   T
Sbjct: 162 IRFLWRSDAGGRLVEATPSLADAVGASP---VGQHWDELLAGTVLTQDDRLAAALEEHRT 218

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
           +      W +  ++  V +DL+  P     R F+GF GFG++H +RV   P        +
Sbjct: 219 FRAVPVRWRLGESDQGVQVDLSGAPRLGEGRAFAGFSGFGVIHPDRVAALPPRPPASPAR 278

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK--TEKYP 260
               L E      S+ +       +   PP     + V+ L  + +     L        
Sbjct: 279 PRPSLRERAAAVISIGRAA---NPEAPSPPPGANPDYVADLPAFASLAGATLAGFAGMMA 335

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
             +     L         +       +     +  +       +     + +A   E   
Sbjct: 336 STSLNPFGLGWTFCSDPADEAGEPASEEVPPREIPASPPPGPDAPGPGEAAAAAPSEAAP 395

Query: 321 LTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
              +  +  P P    +      A+   L L ++ +  +I  A G     D P +     
Sbjct: 396 EAVKAPESAPEP----AGRRPLAASQ--LSLNEHAAFREIARALGARFAGDPPGMDPAAE 449

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
                  R                                         Q G EP   + 
Sbjct: 450 GADDGAPRRGGAVTPFR-------------------------GAAAPARQAGREPAGAED 484

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
              +            IL+    G+ +   +  +L  NR +  L GY   + L +
Sbjct: 485 PSAR------------ILDRLPLGVLVHRGDD-VLFANRRLLGLAGYGTAEDLSQ 526



 Score = 48.5 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/248 (10%), Positives = 59/248 (23%), Gaps = 12/248 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D  G + + ++      G+   ++ G     +      D    +   L+R     G+  
Sbjct: 625 LDGSGRILDFNKGAKALFGHEPREVTGEDFSLLFTP---DSRPAVQAALQR--ARSGEPA 679

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF-GIVHVNRVDNDPRALGKRLDKKFSHL 207
                G      + L   PI        G R F  ++          A   R  +     
Sbjct: 680 SIEAIGERREGILALTVAPIAGE-----GTRRFSALLRDVTAARRTEAELLRAKRAAEAA 734

Query: 208 HEIKKGHSSVEKEKYDIFSQQ-SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
           +  K    +    +             + M+ +   +                  + S  
Sbjct: 735 NSQKSDFLATISHEIRTPLNAILGFTEVMMEEQFGPIGNERYRDYLRDIRTSGEHVVSLV 794

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
           + L +       +L+          L   S    +  + R    +   F  G       +
Sbjct: 795 TDLLDLAKIEAGHLDLSFTGVALNDLVGASVSLMQPQAARQRVVVRTSFASGLKPVLADM 854

Query: 327 DKCPIPFF 334
                   
Sbjct: 855 RSMRQAAL 862


>gi|302035962|ref|YP_003796284.1| putative histidine kinase [Candidatus Nitrospira defluvii]
 gi|300604026|emb|CBK40358.1| putative Histidine kinase [Candidatus Nitrospira defluvii]
          Length = 1610

 Score =  434 bits (1115), Expect = e-119,   Method: Composition-based stats.
 Identities = 135/761 (17%), Positives = 276/761 (36%), Gaps = 60/761 (7%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQ-----NT 142
            ID  G ++  +  L   +G  A ++IG  +  +    + + ++  + + L         +
Sbjct: 568  IDERGRIESANTALLNLLGYQAHELIGQNISLLMPSPYREHHDEYLANYLATGKRTIIGS 627

Query: 143  WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
                  +   +GT + + + ++ + I +        +  G++          A  +  ++
Sbjct: 628  GRDVPAV-RKDGTQIDLHVSVSEMQIGTEK------KYTGMLRDISERKRMEATLRESEE 680

Query: 203  KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV------SSLTEYYAHKDDVLKT 256
            +F  L E       +           SP      +          S    + H +D  + 
Sbjct: 681  RFRQLAEHIDAVFWLTSPDKSEVLYVSPAFETIWEFPRDLLYVNPSFWLDHIHPEDRTRV 740

Query: 257  EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL----S 312
                          E+    T +      +     ++N   E +         +      
Sbjct: 741  ATAAACQM-HLPYDEEYRIVTPSGQVRWIRDRSFAIKNAQGEPYRIAGITVDITAAKQME 799

Query: 313  AYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
            A     E      V+  P   FV     + + N + + L    +   +     L      
Sbjct: 800  AQIRASELRHRALVELSPHAIFVNCEDRIVFTNQACVKLLGAIAPSQLFGKTVLE--FIH 857

Query: 373  PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
            P+       +   +  +++       R             +          F        
Sbjct: 858  PESQAKVQQRIATIRETNQPVPPTEERFV-----GLAGAIIDVEVAATPIMFEGKPAIQV 912

Query: 433  IEPEDVDTRINKRKMEIEVMQLCSILEATS-DGIAIINREGIILSTNRAVSKLFGYPVED 491
            I  +    +  +R +    +QL +IL + +   I   N EG I + N    +L GY  ++
Sbjct: 913  IATDIRARKDLERALLATNLQLQTILASATNVSIVATNTEGTITTFNTGAEELLGYTSDE 972

Query: 492  ILRK-PFTVFLEQNTPSVMNHYLTEILSLDLRQT------------LEKITLGSTKEEKL 538
            ++ +    +             L+++    ++               E+      K+   
Sbjct: 973  MIGQQSLILLHVPEEIDRHAKELSDLYERPIQGVAALVEHANRGGFDEREWTYQRKDGSR 1032

Query: 539  LSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
            L++ + I  L  S      +     DI+  K  ++ L+ A+  A + +  K+DFLA +SH
Sbjct: 1033 LTVLVTITALRDSDGVVTGFLAMGKDITSRKAAEHALAEARDEALRAAQVKADFLATMSH 1092

Query: 595  EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
            EIRTP+ AIIG + ++ +            E+A+ + RS + +L ++ND+LD SKIE+GK
Sbjct: 1093 EIRTPMNAIIGMTGLLLDTALTK----EQHEFADSVRRSSDGLLTLLNDILDFSKIEAGK 1148

Query: 655  MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILS 713
            ++    P  L   V + + L+   A  K + +       +P  ++ D   ++QI +N++ 
Sbjct: 1149 LHFEQLPFDLRMTVEDTVELLAEQAQSKGLELIGLVDAAVPTAVVGDPGRLRQILVNLVG 1208

Query: 714  NAIHFTPSGGQIIISTTHTSNEEV---ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
            NAI FT +G ++ +  T  +   +      ++DTG+G+      +    F Q  +S   R
Sbjct: 1209 NAIKFTAAG-EVFLHVTRETQGGLDLLRFTIKDTGIGIPEAVQGRLFHAFVQADSSTTRR 1267

Query: 771  GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII--FP 809
              GTGLGL + + +V    G+  + S   +G+       FP
Sbjct: 1268 FGGTGLGLAICQRLVSQMHGQIGVESHSGQGSTFWFTAQFP 1308



 Score =  132 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 50/525 (9%), Positives = 136/525 (25%), Gaps = 39/525 (7%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIG--MRLCDVSDILHIDPNNHIGDLLKRQNTWY 144
           W I   G +   +E    T+G    ++         +     +           R +T  
Sbjct: 303 WEI-PTGRVT-FNERWASTLGYRLDELEPHVRTWEQLVHPDDLQQVMATVSAHLRGDTPT 360

Query: 145 GKTTLWPIEGTNLYVPIDLAALPI-YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD-- 201
             +       +  +  +  +   +           R  GI           A   R    
Sbjct: 361 YSSEHRLRRKSGAWCWVFDSGRVVKRDAKGAP--LRAAGIHLDISDRKALEAAQARAQCD 418

Query: 202 --KKFSHLHEIKKGHSSVEKEKYDIFSQQSP----------PPHLRMKNKVSSLTEYYAH 249
              K   L E +               Q++            P   +    + L+  +  
Sbjct: 419 LHAKQQALDEAQTQAHLGSWHWNIETGQEAWSDEQCRIFGHTPDQSLPTYATFLSALHPD 478

Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE----SFEYLSH 305
             + +K +      + +S           +             ++        +   L  
Sbjct: 479 DVERVK-QAVDGALTYDSPYNVDCRIRRPDGEVRHINCRGVVQRDPDGRPVSMAGTVLDI 537

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364
            ++      + + E       +        +   G +  AN + L L  Y++ + I    
Sbjct: 538 TDYKRTEFAWRDSETRMRSIFESAIEGIVVIDERGRIESANTALLNLLGYQAHELIGQNI 597

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
            L  L+ +P    ++      L    RT I +   +  ++ +      +         Q 
Sbjct: 598 SL--LMPSPYREHHDEYLANYLATGKRTIIGSGRDVPAVRKDGTQ---IDLHVSVSEMQI 652

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG-IILSTNRAVSK 483
                  G+  +  + +  +  +     +   + E       + + +   +L  + A   
Sbjct: 653 GTEKKYTGMLRDISERKRMEATLRESEERFRQLAEHIDAVFWLTSPDKSEVLYVSPAFET 712

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           ++ +P + +   P                +    +  +    ++     T   ++  +R 
Sbjct: 713 IWEFPRDLLYVNPSFWLDHI--HPEDRTRVATAAACQMHLPYDEEYRIVTPSGQVRWIRD 770

Query: 544 IIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
               +  +       +    DI+  KQ + ++  ++         
Sbjct: 771 RSFAIKNAQGEPYRIAGITVDITAAKQMEAQIRASELRHRALVEL 815



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/433 (9%), Positives = 102/433 (23%), Gaps = 26/433 (6%)

Query: 168 IYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ 227
           +       +  R  G                R   K   +  + +   S+ +        
Sbjct: 9   LRDMTACGAALRRLGT--DAASLEQVADRLVRHLYKSLTMGHLGEPACSLVRLFKTTPYS 66

Query: 228 QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287
           +  P    + +     T        +        +            F  I L+     +
Sbjct: 67  RLTPDLRALADTRIGNTPPAPSLTCLTLLASAGAVPGWNDPAHSS-RFRVIPLDTLEAVE 125

Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPS 347
                    ++    L     P  S   D+ E      V   P                 
Sbjct: 126 RLPMFSQLFRQLGVSLPSLTQPGPSVLLDQHEQSFN--VFHIPEA----EGSPYVPGQEE 179

Query: 348 FLLLTKYKSVDDIEIAGGLSTLLD-----APKLSDNNAIKPVMLYRSDRTCIAASARLHT 402
           F+     +SV           L          + ++ A     L    +  +A  A    
Sbjct: 180 FVRTYGIRSVLGFGAPLPDGELFSIILFSKDFIPESTATLFKPLALCAQIALAPYATTTA 239

Query: 403 IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
                + S                   +       +     ++ ++ +  ++  I++ + 
Sbjct: 240 ASHPHQTSRPEQAGDDPTPVHNAHLQARIADLERLLAVH--EQTVDEQADRMDLIVQGSQ 297

Query: 463 DGIAIIN-REGIILSTNRAVSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEILSL 519
            G        G +   N   +   GY ++++    + +   +  +    +   ++  L  
Sbjct: 298 MGTWDWEIPTGRVTF-NERWASTLGYRLDELEPHVRTWEQLVHPDDLQQVMATVSAHLRG 356

Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-----CYSLTMHDISEWKQEKNKLSHA 574
           D   T         K      +    + +   +       +    DIS+ K  +   + A
Sbjct: 357 DTP-TYSSEHRLRRKSGAWCWVFDSGRVVKRDAKGAPLRAAGIHLDISDRKALEAAQARA 415

Query: 575 KKIAEKESSHKSD 587
           +     +     +
Sbjct: 416 QCDLHAKQQALDE 428


>gi|298675480|ref|YP_003727230.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalobium evestigatum Z-7303]
 gi|298288468|gb|ADI74434.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalobium evestigatum Z-7303]
          Length = 754

 Score =  432 bits (1111), Expect = e-118,   Method: Composition-based stats.
 Identities = 143/755 (18%), Positives = 273/755 (36%), Gaps = 51/755 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR------ 139
            W +D        S+ +    G     +IG  L        I  + H  +L  R      
Sbjct: 16  IWVVDKFDKFIYFSQNMADITGISKEDVIGKYLMSYMPERTIGNDVHFRELFLRVKNTLQ 75

Query: 140 QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK- 198
              +                      +PI   +  ++G     I+         +   + 
Sbjct: 76  PEHFKSIPLRNKKGNITYQ---SGRLVPISDTDSNYNGMA--CIIEDITEQKLSKKTQRD 130

Query: 199 --RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA------HK 250
               + K   +++     + + + + D   +      ++        T          H 
Sbjct: 131 EWEAENKLESIYKSSPVIAFLWRAEKDWPVEFVSDNIIQFGYTSEDFTSGRLIFGDIVHP 190

Query: 251 DDVLKTEKY--PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES----FEYLS 304
           DD+ K       +     +   ++    T +       +     +  +          + 
Sbjct: 191 DDLQKVRDAVSQVEIGGYTYFTKEYRILTKSGEARWVTERSMLGRKYNGVPAYYQGIIID 250

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIA 363
                       + E       +  P+  F +   G +   N + L +      + I   
Sbjct: 251 VTERKKAEEALRKSERKYRLIFENSPLGIFDFDENGVVTSGNENMLKILDLTRDELIG-- 308

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
                  D PK  ++  +K  +     +          +   N+   L + F P      
Sbjct: 309 ------FDMPKSLEDEDMKKALYQVFQKKTGHYEGYYRSPTSNKTVPLKVDFSPIISE-- 360

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
                   GI  +  + +  +  ++    +  S+ E  +D I I + +G IL  N+  S+
Sbjct: 361 EGTIQGGVGIVEDITERKQAEEALKESEKKFRSLFENANDAIFIHDLKGNILEVNQLASQ 420

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
             GY  +++        +       M + L  I            T+  TK    + + +
Sbjct: 421 RLGYSKDELTNIKSMDLISPFYADNMKNRLNTIQKKGHGI---FETVQITKNGSSIPVEL 477

Query: 544 I--IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS-------HKSDFLARVSH 594
              I +    +       DI+E K+ + KL+       K +         K +FL+ VSH
Sbjct: 478 SSRIIEYEGKTAILALARDITERKRAERKLNEYANELAKANEELKSLDKMKDEFLSNVSH 537

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           E++TPLT+I G+S +I  +  G L N    +  N I R+   +  +V+ L+ +S  ++GK
Sbjct: 538 ELKTPLTSIKGYSNIIYEETLGKL-NDEQKKTMNTIVRNSERLRRLVDSLIYMSMSQAGK 596

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714
           +   FEPV + + + +AI       N+K +++  + + NIP+I  D   +  +  N+L N
Sbjct: 597 IEYSFEPVQISKVIDDAIEDTNFEINKKGLILNKNVSENIPQINGDKAKLTDMLTNLLDN 656

Query: 715 AIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           A  FT SGG+I +      +E + ++V DTGVG+    +    + F QI +S + +  GT
Sbjct: 657 ATKFTSSGGEITVE-AFEEDEHIHIKVTDTGVGIPEDLIPYLFQRFYQIDSSIRRKYGGT 715

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GLGL + K +VDA+ G  +I S   KGT + +  P
Sbjct: 716 GLGLYICKLIVDAHYGNIWIDSIEGKGTTVHVKLP 750



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/123 (15%), Positives = 46/123 (37%), Gaps = 12/123 (9%)

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT---PSV 508
                ILE  S GI ++++    +  ++ ++ + G   ED++ K    ++ + T      
Sbjct: 3   EFYEQILENISQGIWVVDKFDKFIYFSQNMADITGISKEDVIGKYLMSYMPERTIGNDVH 62

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTK------EEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
                  + +    +  + I L + K        +L+ +          +  +  + DI+
Sbjct: 63  FRELFLRVKNTLQPEHFKSIPLRNKKGNITYQSGRLVPISDT---DSNYNGMACIIEDIT 119

Query: 563 EWK 565
           E K
Sbjct: 120 EQK 122


>gi|308050680|ref|YP_003914246.1| multi-sensor hybrid histidine kinase [Ferrimonas balearica DSM 9799]
 gi|307632870|gb|ADN77172.1| multi-sensor hybrid histidine kinase [Ferrimonas balearica DSM 9799]
          Length = 1756

 Score =  431 bits (1109), Expect = e-118,   Method: Composition-based stats.
 Identities = 139/761 (18%), Positives = 267/761 (35%), Gaps = 55/761 (7%)

Query: 91   AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY---GKT 147
              G +  ++++     G    ++IG  +  +      + +  + +      T      + 
Sbjct: 531  PDGTVVYLNQQAESLTGYLRDELIGQSVEVLVPPASRNHHPQLREAFLSDATARPGGMEL 590

Query: 148  TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
             L+  +G  L V I L+ LP ++  +     R   I+      +      +  +++F  L
Sbjct: 591  ALYRADGKKLAVEISLSELPAFAGQQP----RIAAIIRDISERHAMDRKLRESEERFRTL 646

Query: 208  HEIKKGH------------SSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255
                 G             + +     D+    +       K   +SL       D    
Sbjct: 647  VGNIPGVVYRCALDSHWTMAFISDHIKDLSGYPASDFLNNAKRSFASLIHPE---DATRL 703

Query: 256  TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
             E   L      S  ++              +      + + +        +  + +   
Sbjct: 704  AEVVKLGVEAGDSWSQEYRIINRRGQVRWVYEKGRAHYDENGKPMWLDGSIHDITEARSN 763

Query: 316  DEGE----NLTPETVDKCPIPFFVYSHG------NLFYANPSFLLLTKYKSVDDIEIAGG 365
             +             +  P   F              + +              +E    
Sbjct: 764  HQQMLAAKAQLETITESVPGVVFQLQQDDSELGIRCSFVSGGIRQALGVSKSRVLENLNS 823

Query: 366  LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
            +  L+      D  A++  +   +D     +      I          +       +   
Sbjct: 824  VLELVHP---EDRGALETTLKRSADSQQDWSREVRFVI---GGTEQWFSVSVQVSRDDSG 877

Query: 426  ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
                 NG        +  ++++        ++ +     I  +N+ G+I   N    +  
Sbjct: 878  ALW-WNGFLVNISQRKAMEQQLVNSEAHFRALFDNAGIAIVTLNKLGVIGEANERFQQFA 936

Query: 486  GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
                E ++ +  +  L        N  L  +L+ + R  L +       +  L    +  
Sbjct: 937  ELEPEQLIGQHISQLLPAEDRDSFNQSLAPLLAGEQRH-LAQEMRYRKPDGSLRWADMRA 995

Query: 546  KKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
              L           LTM D++E +Q    L  AK+ A+  S  K+DFLA +SHEIRTP+ 
Sbjct: 996  VVLKDYQGGLSALVLTMSDVTERRQINEALRQAKEAADAASKAKTDFLANMSHEIRTPMN 1055

Query: 602  AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
            AIIG +++       P    R  +Y   ID +   +L I+ND+LD SKIE+G++ L  EP
Sbjct: 1056 AIIGMTQLCLQTDLPP----RQADYLRKIDSASQSLLGIINDVLDYSKIEAGRLELEQEP 1111

Query: 662  VSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTP 720
             +LDE + +   L  + A EK + +  +    +P R+  D+  + QI +N+LSNAI FT 
Sbjct: 1112 FALDELLEQLSDLFAVRAKEKGVELLFAVEPEVPARLNGDMLRLGQILINLLSNAIKFTD 1171

Query: 721  SGGQIIISTTHTSNE-----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
             G +++++             +   VRDTG+GM+  +  +  + F Q  +S   +  GTG
Sbjct: 1172 HG-EVVLAIRQLDGAPPGQTRLTFSVRDTGIGMSPEQQARLFQSFSQADSSTTRKYGGTG 1230

Query: 776  LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
            LGL +++ +V    G+  + S    G+       L     P
Sbjct: 1231 LGLAISQRLVSLMGGQIQVNSAAGAGSTFHFSIELALPEQP 1271



 Score =  113 bits (284), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 42/397 (10%), Positives = 101/397 (25%), Gaps = 21/397 (5%)

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247
           R            D     +       +               P   +M+N V  L  + 
Sbjct: 260 RQQELGIERMVMADGGEFVVAYQWIPTTDWLLAIARPAETVDAPILAKMRNSVLQLLLFT 319

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
                +       +    E            + +    K           +    ++   
Sbjct: 320 LLFALIAWWLTRRIARPLEQLRHRVIALQHGSRSLTALKVPGTEEIQALDQGLLSMAEAL 379

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYS---HGNLFYANPSFLLLTKYKSVDDIEIAG 364
                   D   +   + ++      F Y+    G + +A+ S   +  Y   +      
Sbjct: 380 KERELRLQDAHGSRLAKLLEGMGDTAFYYAMDPDGKVLHASDSVKAVLGYSPEE------ 433

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
             +       + D                 A       ++         +       +  
Sbjct: 434 -FARRYPRLFVDDEINESSWRYQEQLMQGQAVPPHPLALRHENGEVRQFSAYMQPVTDVQ 492

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
            + +    +  +  +                S+L+A  D I +   +G ++  N+    L
Sbjct: 493 GDLLGIEALLTDMTEELEA-------GRWYQSVLDAAPDAILLAEPDGTVVYLNQQAESL 545

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
            GY  ++++ +   V +   + +         LS    +           + K L++ I 
Sbjct: 546 TGYLRDELIGQSVEVLVPPASRNHHPQLREAFLSDATARPGGMELALYRADGKKLAVEIS 605

Query: 545 IKKLPF----SSCYSLTMHDISEWKQEKNKLSHAKKI 577
           + +LP         +  + DISE      KL  +++ 
Sbjct: 606 LSELPAFAGQQPRIAAIIRDISERHAMDRKLRESEER 642



 Score =  102 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 58/518 (11%), Positives = 142/518 (27%), Gaps = 38/518 (7%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144
           F + +D  G +   S+ +   +G    +          D    + +    + L +     
Sbjct: 406 FYYAMDPDGKVLHASDSVKAVLGYSPEEFARRYPRLFVDDEINESSWRYQEQLMQGQAVP 465

Query: 145 GKTTLWPIEGTNLYVPIDLAA--LPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
                   E   +      +A   P+     +  G              +    G+    
Sbjct: 466 PHPLALRHENGEVR---QFSAYMQPVTDVQGDLLGIEAL-----LTDMTEELEAGRWYQS 517

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL----KTEK 258
                 +            Y     +S   +LR  +++   +              +  +
Sbjct: 518 VLDAAPDAILLAEPDGTVVYLNQQAESLTGYLR--DELIGQSVEVLVPPASRNHHPQLRE 575

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
             L  +       +   +  +  +   +     L   + +     +     S     D  
Sbjct: 576 AFLSDATARPGGMELALYRADGKKLAVEISLSELPAFAGQQPRIAAIIRDISERHAMDRK 635

Query: 319 ENLTPETVDKC--PIPFFVYSHGNLFYANPSFL-----LLTKYKSVDDIEIAGGLSTLLD 371
              + E        IP  VY      +   +F+      L+ Y + D +  A      L 
Sbjct: 636 LRESEERFRTLVGNIPGVVYRCALDSHWTMAFISDHIKDLSGYPASDFLNNAKRSFASLI 695

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
            P+       + V L        +   R+   +        +        ++  + M  +
Sbjct: 696 HPE-DATRLAEVVKLGVEAGDSWSQEYRIINRR---GQVRWVYEKGRAHYDENGKPMWLD 751

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII---NREGIIL--STNRAVSKLFG 486
           G   +  + R N ++M     QL +I E+    +  +   + E  I     +  + +  G
Sbjct: 752 GSIHDITEARSNHQQMLAAKAQLETITESVPGVVFQLQQDDSELGIRCSFVSGGIRQALG 811

Query: 487 YPVEDILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE-EKLLSLRI 543
                +L         +       +   L    S D +Q   +         E+  S+ +
Sbjct: 812 VSKSRVLENLNSVLELVHPEDRGALETTLKR--SADSQQDWSREVRFVIGGTEQWFSVSV 869

Query: 544 IIKKLPFSSCYS-LTMHDISEWKQEKNKLSHAKKIAEK 580
            + +    + +    + +IS+ K  + +L +++     
Sbjct: 870 QVSRDDSGALWWNGFLVNISQRKAMEQQLVNSEAHFRA 907


>gi|126656724|ref|ZP_01727938.1| Multi-sensor Hybrid Histidine Kinase [Cyanothece sp. CCY0110]
 gi|126621944|gb|EAZ92652.1| Multi-sensor Hybrid Histidine Kinase [Cyanothece sp. CCY0110]
          Length = 1302

 Score =  430 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 136/778 (17%), Positives = 262/778 (33%), Gaps = 43/778 (5%)

Query: 64   NTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD 123
             T    SE           V   W  D+ G    +++      G      +G    D   
Sbjct: 407  ETALRASETKLRGMTDNAPV-MIWVTDSTGSCTYLNQRWYDFTGQREATALGFGWLDAVH 465

Query: 124  ILHIDPNNHI-GDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFG 182
                +    I     ++  ++  +  L    G   Y     AA P +  N +F G+ G  
Sbjct: 466  PEDSEAARGIFLKANEKHESFRLEYRLRHHSG--QYHWAIDAAHPWFGENGKFKGYIGAV 523

Query: 183  IVHVNRVDNDPRALGKRLDKKFSHLHEIKKG-------HSSVEKEKYDIFSQQSPPPHLR 235
            I              +  ++++  L E               + +  D    ++ P   +
Sbjct: 524  I--DISDRKQAEEALRHSEERYRTLFESMSEGFCVIKMLFDPDNQPIDYCFLETNPAFEQ 581

Query: 236  MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT--LQ 293
                  ++ +        L+   +        +       H  ++             L 
Sbjct: 582  QTGLSQAVGKTARQLLPDLEPHWFETYGKVALTGESIRFEHGSDVMARWFDVSAFRIGLP 641

Query: 294  NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI-PFFVYSHGNLFYANPSFLLLT 352
               K +  +              E         D      +     G +F+ N  +   T
Sbjct: 642  EEGKVAILFEEISERKQTERKLQENALRFHTLADNISQFAWMANEQGWIFWYNQRWFDYT 701

Query: 353  KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
               ++++++  G                 + +    +          +  ++        
Sbjct: 702  G-TNLEEMQGWGWQK---VHHPDHVKRVTEKINQCFATGEIWE---DMFPLRSKTGEYRW 754

Query: 413  MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG 472
                     ++  + +   G   +  + R  +  +     +   + E+    +   NREG
Sbjct: 755  FLSRAIPIRDEQGKVLRWFGTNTDITELREAENALRQSEERYRCLTESIPQLVWTANREG 814

Query: 473  IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
             +L  N+   +  G  +E      +   +      V+    TE +        +      
Sbjct: 815  ELLDVNQRWIEFTGLSLEQARADGWEAVVHPEDLPVLREQWTEAVQRGTP--YQAEGRMR 872

Query: 533  TKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSH-------AKKIAEKE 581
              +                      +  T  DI   KQ + +          A+++AE+ 
Sbjct: 873  RMDGTYRWFLHQAIPQGNEPGKMIKWYGTATDIDVQKQLELERDRLLAQEQAAREVAERA 932

Query: 582  SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
            +  K +FLA +SHE+R+PL  I+G+S++++ ++   L   +  E  + I+R+  L   ++
Sbjct: 933  NRIKDEFLAVLSHELRSPLNPILGWSQLLQVRK---LDEAQTAEALHTIERNAKLQTQLI 989

Query: 642  NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701
            +DLLD++KI  GK++L    V+L + +  AI  V+  A  K I + +    NI ++  D 
Sbjct: 990  DDLLDVAKILQGKLSLTMTSVNLAKTIEAAIETVKQTAKSKSIALESQL-PNIGQVSGDE 1048

Query: 702  RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761
              ++QI  N+LSN I FTPSGGQ+ I           + V+DTG G++   L    + F 
Sbjct: 1049 ARLQQIVWNLLSNGIKFTPSGGQVKIHLKRV-GSYAEILVKDTGKGISPDFLPHIFESFR 1107

Query: 762  QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFPLYDT-SHPH 817
            Q   S   +  G GLGL +   +V+A+ G     S     G    +  PL D  S P 
Sbjct: 1108 QEDASITRKFGGLGLGLAIVSQLVEAHGGTIRAESPGEGLGATFTVQLPLLDAESEPQ 1165



 Score =  121 bits (303), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 53/536 (9%), Positives = 140/536 (26%), Gaps = 46/536 (8%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGKTTLW 150
              +  ++E   +         IG  LC++          +    +++        + ++
Sbjct: 165 DFRIDYLNEAACQNNQMPKAMQIGRGLCEILPAHRQSGLFDEYCRVVETGKPLIKDSLIY 224

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGF------------GIVHVNRVDNDPRALGK 198
                +  +            +   + +R               I H+N+      AL +
Sbjct: 225 DDTYGDRRLIRAFDIRASKLNDGFVASWRDVTAHRQLELELNQTITHINQHQQTTLALQQ 284

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS-----LTEYYAHKDDV 253
             ++    +     G      +  ++    +      M           +      +D  
Sbjct: 285 SQERLNLAMKAASMGSWDWNIQTGEVNWSSNLENLFGMSPGSFDGTYETVRAMIHPEDLP 344

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS----HRNHP 309
              +              +  F   + +            ++               +  
Sbjct: 345 KVEQALQRALYNREEYNIEFRFIKPDGSLRWALGLGRVFYDDEGNPIMMTGVDMDISHRK 404

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
            +       E       D  P+  +V    G+  Y N  +   T  +    +   G L  
Sbjct: 405 QIETALRASETKLRGMTDNAPVMIWVTDSTGSCTYLNQRWYDFTGQREATAL-GFGWLDA 463

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
           +       +++     +  +++    +     + ++ +                +  +  
Sbjct: 464 V-----HPEDSEAARGIFLKANEKHESFRLE-YRLRHHSGQYHWAIDAAHPWFGENGKFK 517

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI----INREGI-----ILSTNR 479
              G   +  D +  +  +     +  ++ E+ S+G  +     + +        L TN 
Sbjct: 518 GYIGAVIDISDRKQAEEALRHSEERYRTLFESMSEGFCVIKMLFDPDNQPIDYCFLETNP 577

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
           A  +  G      + K     L  +          ++         E    GS    +  
Sbjct: 578 AFEQQTGLS--QAVGKTARQLL-PDLEPHWFETYGKVALTGESIRFEH---GSDVMARWF 631

Query: 540 SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
            +      LP     ++   +ISE KQ + KL          + + S F A +++E
Sbjct: 632 DVSAFRIGLPEEGKVAILFEEISERKQTERKLQENALRFHTLADNISQF-AWMANE 686



 Score = 58.1 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 16/160 (10%), Positives = 48/160 (30%), Gaps = 9/160 (5%)

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR---------EGIILSTNRAVSK 483
                ++    K++++       + +E   D   I +          +  I   N A  +
Sbjct: 118 AMRTAIENAELKQELQRSQETFRTSVENMLDCFGIFSAMRDDLGKIVDFRIDYLNEAACQ 177

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
               P    + +     L  +  S +      ++        + +    T  ++ L    
Sbjct: 178 NNQMPKAMQIGRGLCEILPAHRQSGLFDEYCRVVETGKPLIKDSLIYDDTYGDRRLIRAF 237

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
            I+    +  +  +  D++  +Q + +L+       +   
Sbjct: 238 DIRASKLNDGFVASWRDVTAHRQLELELNQTITHINQHQQ 277


>gi|332706440|ref|ZP_08426501.1| PAS domain S-box protein [Lyngbya majuscula 3L]
 gi|332354324|gb|EGJ33803.1| PAS domain S-box protein [Lyngbya majuscula 3L]
          Length = 1299

 Score =  430 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 134/778 (17%), Positives = 278/778 (35%), Gaps = 67/778 (8%)

Query: 90   DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
            D H   K  ++   + IG    +++G    +       +       L+ +      +   
Sbjct: 248  DKHYKWKFFNDSFCEFIGYSREQLLGHSDSEFFVSEEAEVFRKTDQLVMKNGVV-NENEE 306

Query: 150  WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL--------- 200
            +  +   +   I       +            G++              +L         
Sbjct: 307  YFTDANGILHFISTKKTRFFDSKNNP---YIVGVIRDLTHRKQLEDRLAKLNECFLDFGS 363

Query: 201  --DKKFSHLHEIKKGHSSVEKEKY---------DIFSQQSPPPHLRMKNKVSSLTEYYAH 249
              DK  +HL  +     +     Y          +   Q PP +  M +    +      
Sbjct: 364  NPDKNINHLVAVCGQLLNASFALYNCLEYNQLVTLGQWQVPPDYPTMDSAKGRICYDVIR 423

Query: 250  KDDVLKTEKYPLLTSEESSLPEQEDFHTI----NLNQYTKKQYFGTLQNNSKESFEYLSH 305
            +       K  L  +  +        + +     +     K+  G+L    ++  E  + 
Sbjct: 424  QGTDESVVKQDLQNTAYAQTDPNITAYNLCTYIGIAVKWNKKVMGSLCVLYQQQVEPSTE 483

Query: 306  ---------------RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLF-YANPSFL 349
                                      + +      V+      +  +      Y +P + 
Sbjct: 484  DKQLLNLIASAIGVEEQRKQAQQELQDSKERFALAVEGVNDGIWDCNLQTGEMYLSPRWK 543

Query: 350  LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
             +  YK  +        + ++    L          L   +            +  +  +
Sbjct: 544  SMLGYKDDEITNTFESWTQIIHPDDLEQTLLSFNNYL---EGNFFQYQEEFRALHKDG-S 599

Query: 410  SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469
               +        ++  +     G   +  + +  +  ++ ++    + LEA +DGIA++N
Sbjct: 600  YRWLLTRGAALWDKTGKPYRIAGSHTDISERKKAEEALKSQL----TALEAATDGIALVN 655

Query: 470  REGIILSTNRAVSKLFGYP-VEDILRKPFTVFLEQNT-PSVMNHYLTEILSLDLRQTLEK 527
              G     N+   +LFGY    +++ + + +         +      ++           
Sbjct: 656  PAGEYFYLNQTHLELFGYTQPNELVGRQWHIIYPPEEIERIEKSVFPQLFKTGKWSG--- 712

Query: 528  ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKK-------IAEK 580
                  K+    +    +  L           DI++ KQ + ++    +         E+
Sbjct: 713  EATAVRKDGSTFAEEFSLTLLED-GGLIRVCRDITQRKQAEEQMQQNHQRLAMANAQLER 771

Query: 581  ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
             +  K +FLA +SHE+RTPL AI+G SE ++ + +G + + R  +  + I  SG  +L++
Sbjct: 772  ATRLKDEFLASMSHELRTPLNAILGLSEALQEEVYGSITD-RQRKSLSTIQGSGQHLLEL 830

Query: 641  VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILAD 700
            +NDLLD++KIESGKM LH   VSL +  + ++  V+  A+ K I + +     +  I  D
Sbjct: 831  INDLLDLAKIESGKMELHICAVSLQKLCNSSLMFVRNQAHHKNIKLTSQVTEKLWEIEVD 890

Query: 701  LRSVKQIALNILSNAIHFTPSGGQIIISTTHT-SNEEVILRVRDTGVGMTNYELEKAMKP 759
             R ++Q+ +N+LSNA+ FTP+GG +I+          +   V DTG+G+    + K  + 
Sbjct: 891  ERRIRQVLINLLSNAVKFTPTGGSVILKAEEDLLRNTICFSVMDTGIGIAKENMPKLFQS 950

Query: 760  FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
            F QI +    R  GTGLGL L +  ++ + G+  + S   +G+   +  P+  +  P+
Sbjct: 951  FVQIDSRLSRRYAGTGLGLALVQRTIEIHGGRVDVESEVGQGSCFRVTLPIKQSGEPN 1008



 Score = 84.7 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 33/301 (10%), Positives = 78/301 (25%), Gaps = 35/301 (11%)

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIP-----FFVYSHGNLFYANPSFLLLTKYKSVDD 359
                +     +     T   +             +  +  + + N  F  +      ++
Sbjct: 62  IARDITERKQGENLLKRTKFLLKAQQEASIDGILVIDENQKIIWHNRRFGQMWNIP--EE 119

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
           I  + G    L    LS  N  K  +          +      I  N             
Sbjct: 120 ILNSSGDDQKLLKSVLSKLNKPKEFIHRLKYLCEHPSEVSRDEIYLNDGRIFDRYSGSVV 179

Query: 420 KANQFPENMPQNGIEPEDVDTRINKR--------------KMEIEVMQLCS-------IL 458
                 +   +     +    +  +               ++E+   +L +       I+
Sbjct: 180 SEAS--DYYTRIWYFRDITQRKQVEAQVTQLNQELSNHALELEVANTELAATKDFITNII 237

Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
            A SD I + ++       N +  +  GY  E +L    + F       V       ++ 
Sbjct: 238 NAVSDPIFVKDKHYKWKFFNDSFCEFIGYSREQLLGHSDSEFFVSEEAEVFRKTDQLVMK 297

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS---SCYSLTMHDISEWKQEKNKLSHAK 575
             +    E     +     L  +     +   S         + D++  KQ +++L+   
Sbjct: 298 NGV--VNENEEYFTDANGILHFISTKKTRFFDSKNNPYIVGVIRDLTHRKQLEDRLAKLN 355

Query: 576 K 576
           +
Sbjct: 356 E 356



 Score = 68.1 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 70/195 (35%), Gaps = 19/195 (9%)

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
            I  +  + +  +  ++     L +  EA+ DGI +I+    I+  NR   +++  P E 
Sbjct: 61  VIARDITERKQGENLLKRTKFLLKAQQEASIDGILVIDENQKIIWHNRRFGQMWNIPEEI 120

Query: 492 IL-----RKPFTVFLEQ-NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
           +      +K     L + N P    H L  +       + ++I L    + ++       
Sbjct: 121 LNSSGDDQKLLKSVLSKLNKPKEFIHRLKYLCEHPSEVSRDEIYLN---DGRIFDRYSGS 177

Query: 546 KKLPFSSCYSLT--MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
                S  Y+      DI++ KQ + +++   +     +      +A       T L A 
Sbjct: 178 VVSEASDYYTRIWYFRDITQRKQVEAQVTQLNQEL--SNHALELEVAN------TELAAT 229

Query: 604 IGFSEVIKNQRFGPL 618
             F   I N    P+
Sbjct: 230 KDFITNIINAVSDPI 244



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/170 (9%), Positives = 49/170 (28%), Gaps = 11/170 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAF-KMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGK 146
           ++  G    +++   +  G     +++G +   +     I+     +   L +   W G+
Sbjct: 654 VNPAGEYFYLNQTHLELFGYTQPNELVGRQWHIIYPPEEIERIEKSVFPQLFKTGKWSGE 713

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
            T    +G+       L  L     +          +              ++  ++ + 
Sbjct: 714 ATAVRKDGSTFAEEFSLTLL----EDGGL-----IRVCRDITQRKQAEEQMQQNHQRLAM 764

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256
            +   +  + ++ E     S +   P   +     +L E         + 
Sbjct: 765 ANAQLERATRLKDEFLASMSHELRTPLNAILGLSEALQEEVYGSITDRQR 814


>gi|146309325|ref|YP_001189790.1| PAS/PAC sensor signal transduction histidine kinase [Pseudomonas
            mendocina ymp]
 gi|145577526|gb|ABP87058.1| PAS/PAC sensor signal transduction histidine kinase [Pseudomonas
            mendocina ymp]
          Length = 1291

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 123/760 (16%), Positives = 250/760 (32%), Gaps = 62/760 (8%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
             D  G +   +    + +G  A +MIG +   +  +                +   G   
Sbjct: 560  TDTSGTISLFNSGAERLLGYGAAEMIGRQTPAIIHLEEEVQARAAELSEASGHAVEGFEV 619

Query: 149  ----------------LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192
                                +G    V + ++A  I+  N + +GF G  I         
Sbjct: 620  FVHNARGGEPETRQWTYRHKDGGLRQVNLTVSA--IFDENGQITGFLG--IASDISELLQ 675

Query: 193  PRALGKRLDKKFSHLHEIKKGHS--------SVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244
                 ++ + +F  L     G             +   D        P     +      
Sbjct: 676  TTRALQKSESRFRGLVANLPGVVYRCANDSQWSMRYVSDEIRNLCGYPASDFIDNRVRSF 735

Query: 245  EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
                H DD+  T +       + S          + +    ++      +          
Sbjct: 736  SSIVHPDDLAITFRAGEAIERQESFELTYRLRHADGHNVWVREKGRGEYDGQGHLLWVDG 795

Query: 305  ----HRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDD 359
                     ++       +       +  P     V   G    AN     +  Y   + 
Sbjct: 796  FIWDISERQAMEDELRLSQQRFLNAFNTAPQGMALVGPDGRWLEANDELCRMLGYSREEL 855

Query: 360  IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
            +       T        D +A +  M         A       +       L +      
Sbjct: 856  LACTYQQVT-----HPDDLDADRQNMEDLLAGRINAYQMEKRYLDKQG-RILWVLLSVSL 909

Query: 420  KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
              +     +       +  D    +R +      L ++L+   D I  I+ +G I + N 
Sbjct: 910  VRDSEGRPVHFVSQIQDFSDRVAAERAVREREHYLSTLLDNVLDAIVTIDEQGRIETFNH 969

Query: 480  AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEK 537
            A   +FGY   ++      + + +   S  + Y+   L       +   +   G  +  +
Sbjct: 970  AAEAIFGYRQSEVAGHNVRLLMPEPYRSAHDGYIQRYLRTGEAWVIGQARELEGMRQNGE 1029

Query: 538  LLSLRIIIKKL--PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
              ++ + + ++       +   + DI+E K+ +                K++F++ VSHE
Sbjct: 1030 RFAMELAVSQISHQGQRRFIAVIRDIAERKRIE--------------LMKNEFVSTVSHE 1075

Query: 596  IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
            +RTPLTAI G   +I     G + +    +       +   +  ++NDLLD+ K+ +GKM
Sbjct: 1076 LRTPLTAIAGSLGLINGGALGAVPD-NMRQMLAIAHSNSQRLSALINDLLDMDKLVAGKM 1134

Query: 656  NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715
            +   +  +L   + +A+   Q YA + ++ +R    ++  ++  D + + Q+  N+LSNA
Sbjct: 1135 HFDLQARTLQPLLEQALLHNQPYAEQHQVELRLQVEDDA-QVRVDAQRLAQVMANLLSNA 1193

Query: 716  IHFTPSGGQIIISTTHTSNEEV-ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
              F+P G  + +   H    EV  + V D+G G+      +    F Q  +    +  GT
Sbjct: 1194 AKFSPPGTCVDVRLQH--GGEVLRVSVTDSGPGIPEAFKPRIFSKFSQADSGDTRQQGGT 1251

Query: 775  GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
            GLGL + K +++   G     S+P +G       P+  ++
Sbjct: 1252 GLGLAICKEIIERMGGHIGFDSSPGQGATFWFELPITGSA 1291



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/422 (9%), Positives = 102/422 (24%), Gaps = 40/422 (9%)

Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH--- 249
            + +    +++     E       ++  +      Q      R  ++ S      A    
Sbjct: 268 RQQVLAWQEQRRLPAPEEGDSVRLLDHGERHYLVNQVALSSYRQAHQRSDEPLAVALIWH 327

Query: 250 --KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
              D      +       +  L        +     + ++    L    + +   L+   
Sbjct: 328 DISDQYNVHRRDKRWLVIKWLLAWCGAEALLLGLLRSTQRSTQRLMQRQQAALRALNEIA 387

Query: 308 HPSLSAYFDEGENLTPETVDK--CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365
                +  ++         +    P+       G  +                  E+   
Sbjct: 388 ALPSLSRTEQLRQALRLGAEHFGMPLGIISRIEGERYQVVVQVSPDGALSDGQQFELGDT 447

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDR--TCIAASARLHT-IQWNRENSLAMTF------- 415
             +L      +          +R        A  + + T ++   +    + F       
Sbjct: 448 YCSLALQQDEALAITHMADSPHRRHPCYRQFALESYIGTAVRVAGKPFGTLAFANPEPRR 507

Query: 416 --IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS-DGIAIINREG 472
                   +         G     ++ +  +R +      L ++L++ +   I   +  G
Sbjct: 508 RPFDAADRDFLGLFARWVGA---ILERQQQERAVRAARAYLQAVLDSATGVSIIATDTSG 564

Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE------ 526
            I   N    +L GY   +++ +     +                S    +  E      
Sbjct: 565 TISLFNSGAERLLGYGAAEMIGRQTPAIIHLEEEVQARAAELSEASGHAVEGFEVFVHNA 624

Query: 527 -------KITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAK 575
                  +      K+  L  + + +  +   +     +     DISE  Q    L  ++
Sbjct: 625 RGGEPETRQWTYRHKDGGLRQVNLTVSAIFDENGQITGFLGIASDISELLQTTRALQKSE 684

Query: 576 KI 577
             
Sbjct: 685 SR 686


>gi|307824658|ref|ZP_07654882.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
            SV96]
 gi|307734312|gb|EFO05165.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
            SV96]
          Length = 1278

 Score =  425 bits (1093), Expect = e-116,   Method: Composition-based stats.
 Identities = 134/743 (18%), Positives = 283/743 (38%), Gaps = 43/743 (5%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLC-----DVSDILHIDPNNHIGDLLKRQNTW 143
             DA G L  +++   +  G    +++G         +     ++D    + + +   N W
Sbjct: 404  TDAAGTLIYVNDRFCEISGYSRNELVGQNHRIVKSSEHLPEFYLD----MWNTIVCGNIW 459

Query: 144  YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             G+      +G      ++ + +P          ++   I              + L++ 
Sbjct: 460  RGEVCNRRKDGRLY--WVETSIVPFLDNTGRP--YQYVSIRTDISRIKKAELRLRLLERA 515

Query: 204  FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEKYPL 261
                         V K    +         +    +++       +    +  +     +
Sbjct: 516  VEASA-SSISMVDVNKPGMPLIYVNPAFERITGYSRDEAIGRNPRFLQGKETDQPGVDEI 574

Query: 262  LTSEESSLPEQEDFH--TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
                +         H    N   Y        + +       ++   +  +      +  
Sbjct: 575  RAVLQEGRAGGALLHNYRKNGTPYWNDLRIAPVHDEQGRLSHFIGIADDVTERRDAGDAL 634

Query: 320  NLTPETVDKCP----IPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
              + E + +      I  + ++   G +   +     L  Y      E    +S      
Sbjct: 635  LKSEERLRRSQHYANIGTWDWNIQTGKVI-CSERIGSLFGYP-----EDKREISFKYFLD 688

Query: 374  KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
             +  ++  K +    +     A     H   W       +        +     +   G+
Sbjct: 689  GIHPDDRQKVIDAVDACVQQGAEYNIEHRCVWPDGTVRWLLERGDVVRDGDGTPLNMLGV 748

Query: 434  EPEDVDTRINKRKMEIEVMQL---CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490
              +    +  + K+  +  +L     I+E  +D +  I+  G I S N A  KLFGY   
Sbjct: 749  VQDITHRKFAELKILEKQARLVIFNHIIENVADAVITIDSVGTISSFNPAAEKLFGYSAA 808

Query: 491  DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL--EKITLGSTKEEKLLSLR--IIIK 546
            +I+ +   + + +   S    Y+    +      +  +    G  K+  + SL   + + 
Sbjct: 809  EIINRNVNLLMPEPYRSKHGRYIDLHNAGQPSGIIGKQLELPGQHKDGTIFSLELAVTLM 868

Query: 547  KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
            ++  S  +   + DISE KQ + ++  A+  AE  ++ KS+FL+ +SHE+RTP+ AI+GF
Sbjct: 869  EIDDSKHFVGILRDISERKQYEQEIIAARDEAESANNAKSEFLSNMSHELRTPMNAILGF 928

Query: 607  SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
             ++++        N    +Y + I ++G+ +L+++N++LD+++IESG +NL  EP+S  E
Sbjct: 929  GQLLE---IEAGLNEDQADYVDEILKAGHHLLELINEVLDLARIESGNINLSLEPLSCAE 985

Query: 667  AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726
             + E ++L++  A  + I I    A     I AD   +KQ+ +N+LSNAI +    G+++
Sbjct: 986  LIGECLTLIKPIAQVRGITIN-DAAIGDYVIRADRTRLKQVLINLLSNAIKYNRPQGEVL 1044

Query: 727  ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
            +         V L V DTG G+     ++  +PF ++   +    EGTG+GL +++ ++ 
Sbjct: 1045 VQVAVQD-GFVRLEVSDTGYGIPATRRQELFQPFSRL-GVEDADIEGTGIGLTISRRLMK 1102

Query: 787  ANMGKFYIFSTPAKGTLIEIIFP 809
               G   + S   +G    I  P
Sbjct: 1103 MMGGAIGMDSEEGRGCTFWIELP 1125



 Score = 74.7 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 51/508 (10%), Positives = 124/508 (24%), Gaps = 42/508 (8%)

Query: 113 MIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172
            I   L +  +    +    +   +       G   L P+      +   +AA+P     
Sbjct: 25  AILRTLLEDIERGRHESLEGLHRAVHSLVGSAGIHQLMPVSEAARNLERVVAAIP----A 80

Query: 173 REFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP 232
            E     G   +     + + +A+               +    V  +  +  +      
Sbjct: 81  DEVQDEHGLHAMRKALANLEAQAVNPGHGFVPQISRRRTEIPRIVIVDDDEEQAGWLRSM 140

Query: 233 HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTI-----NLNQYTKKQ 287
             R   +V    E  A     L TE    +  +   L        +       +      
Sbjct: 141 LERAGYRVDVFHELAAFAAADLTTEPPSAVIMDRVLLEGDNAGTRVIAKLKKQSLNGFPV 200

Query: 288 YFGTLQNNSKESFEYLSHRN-----HPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-- 340
              +++ +                  P  S         +   +   P    +       
Sbjct: 201 IGISMRRDMAAKLAAYRAGASCFLTKPVDSDALLRVVADSAALMPMEPFRVLLVDDDADQ 260

Query: 341 -------LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393
                  L  A  + L       V ++        L+    + + +  +  ++ R D   
Sbjct: 261 RAAYGLILRQAGMTVLDAGDPLEVPEMLEDFAAEVLVLDMVMPECSGPELAVILRDDERY 320

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
                   +++       +      +     P               R   R+   +   
Sbjct: 321 AQVPIVYLSMETRASRQFSALNCSGDHFLAKPVEPHPLVAAVALHARRF--RQTREQTES 378

Query: 454 LCSILEA-----------TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
           L + L                 ++  +  G ++  N    ++ GY   +++ +   +   
Sbjct: 379 LRATLYERERQQQQQALDAHAIVSATDAAGTLIYVNDRFCEISGYSRNELVGQNHRIVKS 438

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTM 558
                     +   +                K+ +L  +   I     ++     Y    
Sbjct: 439 SEHLPEFYLDMWNTIVCGN--IWRGEVCNRRKDGRLYWVETSIVPFLDNTGRPYQYVSIR 496

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKS 586
            DIS  K+ + +L   ++  E  +S  S
Sbjct: 497 TDISRIKKAELRLRLLERAVEASASSIS 524


>gi|24372448|ref|NP_716490.1| sensory box histidine kinase/response regulator [Shewanella
            oneidensis MR-1]
 gi|24346431|gb|AAN53935.1|AE015531_1 sensory box histidine kinase/response regulator [Shewanella
            oneidensis MR-1]
          Length = 1765

 Score =  424 bits (1091), Expect = e-116,   Method: Composition-based stats.
 Identities = 133/782 (17%), Positives = 283/782 (36%), Gaps = 53/782 (6%)

Query: 59   QESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRL 118
               V+      + +  V +  P  +      D +G +   +    +  G  A  M+ +++
Sbjct: 501  FTDVTEQFSAAAWSNAVLEAAPEAMLIV---DQNGQIVFSNSRCQQLFGYDAKAMLALQI 557

Query: 119  C-----DVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNR 173
                  ++  +   +  + + +   R             +G      I L+ LP      
Sbjct: 558  ETLLPEELRHLHTGERLDFLREGRDRPMASARHVRALKSDGGEFVAEIALSILPS----- 612

Query: 174  EFSGFRGFGI-VHVNRVDNDPRALGKRLDKKFSHLH--------EIKKGHSSVEKEKYDI 224
            +F G R     +             +  + +F  L           + G   V +   D 
Sbjct: 613  DFDGRRQVAASIRDMTQKIMVEQKIRDSELRFRGLVTNIPGAVYRTRIGEVWVIEYVSDN 672

Query: 225  FSQQSPPPHLR-MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY 283
             ++ +     + ++N+  + T      D  L  +      +++ +   +      + +  
Sbjct: 673  IAEITGYAASQFIENRQRTFTSLILEDDRALCNQHIERALAQQETFEVEYRIRHRDGSIR 732

Query: 284  TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF----DEGENLTPETVDKCPIPF----FV 335
               +      +       +    +  + S       +          +  P       +V
Sbjct: 733  WVHEKGKASYSEEGLPLWFDGSIDDVTESKLAIDEIEASRQQLTNITESIPCTVYQLRWV 792

Query: 336  YSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394
                    + + + L +      + +     ++  +   +  +  +       +SD    
Sbjct: 793  SPTDRSFTFLSGAALAMLGLHREELLRDFNIIAERIFDEERPEVISALAG---KSDDQLR 849

Query: 395  AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
                R    +        M              +  NG   +  + +  + ++ +     
Sbjct: 850  WI--REFRYRHPNGGIRWMEAGASGHYADDGSII-WNGYVMDVTERKSIEEELAVSEAHF 906

Query: 455  CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
             ++ +  + GI  ++ +G+IL  N    +  G   +++   P    L      V      
Sbjct: 907  KALFDGATIGIVNVDIKGLILDCNYQFCEDMGLSRDELRSTPIFDVLSAQDKDVAKAQFK 966

Query: 515  EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNK 570
            E++   +               + L + + +  L  S        ++M D++E K   ++
Sbjct: 967  ELVEGKIDH-YRGERSFVRPSGEPLWMTVNVSTLLDSQNQFESAVVSMVDMTELKLLSDE 1025

Query: 571  LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
            L  AK  A+  S  K DFLA +SHEIRTP+ AIIG S++    +     + +   Y   I
Sbjct: 1026 LLVAKDEADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTQL----DKKQKNYLEKI 1081

Query: 631  DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
            +R+   +L I+ND+LD SKIE+GK+++      LD  + +   +    A +K+I +  + 
Sbjct: 1082 ERASQSLLSIINDILDFSKIEAGKLDIENVSFQLDTMLEDLSDMFSERAAQKQIELLFAV 1141

Query: 691  ANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTG 745
            A N+PR +L D   + Q+ +N+++NAI FT  G ++++S +    +     +   VRD+G
Sbjct: 1142 APNVPRHLLGDPLRLGQVLINLMNNAIKFTERG-EVLLSLSLVEQQNDDVVLRFSVRDSG 1200

Query: 746  VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
            +G+T  +  K  K F Q   S   +  GTGLGL ++K +V+   G   + S    G+   
Sbjct: 1201 IGLTQEQQSKLFKSFTQADTSTTRKYGGTGLGLAISKQLVELMGGSIGVESQLGHGSTFF 1260

Query: 806  II 807
              
Sbjct: 1261 FT 1262



 Score =  116 bits (291), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 55/515 (10%), Positives = 140/515 (27%), Gaps = 30/515 (5%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI--GDLLKRQNT 142
           F  ++D  G L ++SE + K +G    +++  +   +     ++  N       LK QN 
Sbjct: 405 FYCSLDPDGQLAQVSEGVTKVLGIPP-ELLKRKYQRLFSANPLNEKNWEYTDLALKGQNV 463

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA---LGKR 199
              +  L   +G    + + +   P+ S   E        +           A       
Sbjct: 464 PPHQIELVDAKGQARRLDVFM--QPLVSDTGELMSVE--MLFTDVTEQFSAAAWSNAVLE 519

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
              +   + +              +F   +          +      + H  + L   + 
Sbjct: 520 AAPEAMLIVDQNGQIVFSNSRCQQLFGYDAKAMLALQIETLLPEELRHLHTGERLDFLRE 579

Query: 260 PLLTSEESSLPEQEDFHTINL--NQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
                  S+   +           +              + +           +     +
Sbjct: 580 GRDRPMASARHVRALKSDGGEFVAEIALSILPSDFDGRRQVAASIRDMTQKIMVEQKIRD 639

Query: 318 GENLTPETVDKCPIPFFVYSHGN---LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
            E      V   P   +    G    + Y + +   +T Y +   IE          +  
Sbjct: 640 SELRFRGLVTNIPGAVYRTRIGEVWVIEYVSDNIAEITGYAASQFIENRQ---RTFTSLI 696

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
           L D+ A+    + R+           + I+    +   +        ++    +  +G  
Sbjct: 697 LEDDRALCNQHIERALAQQETFEVE-YRIRHRDGSIRWVHEKGKASYSEEGLPLWFDGSI 755

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN----REGIILSTNRAVSKLFGYPVE 490
            +  ++++   ++E    QL +I E+    +  +      +      + A   + G   E
Sbjct: 756 DDVTESKLAIDEIEASRQQLTNITESIPCTVYQLRWVSPTDRSFTFLSGAALAMLGLHRE 815

Query: 491 DILRKP--FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
           ++LR        +       +   L       LR    +          +  +       
Sbjct: 816 ELLRDFNIIAERIFDEERPEVISALAGKSDDQLRWI--REFRYRHPNGGIRWMEAGASGH 873

Query: 549 PFSSCYS---LTMHDISEWKQEKNKLSHAKKIAEK 580
                       + D++E K  + +L+ ++   + 
Sbjct: 874 YADDGSIIWNGYVMDVTERKSIEEELAVSEAHFKA 908



 Score = 45.4 bits (106), Expect = 0.044,   Method: Composition-based stats.
 Identities = 33/270 (12%), Positives = 80/270 (29%), Gaps = 11/270 (4%)

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS------DNNAI 381
           +     FV   G ++ A+ + +   K++ V  +      ++LLD    +          +
Sbjct: 262 QAGQASFVDDKGTVYLASVAEVAKLKWRVVVMVPKHELFASLLDDIASAILNLSLLTLLL 321

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
                  + R      A    I    +       IP    ++              +  R
Sbjct: 322 LLTCYIAAKRLTRPLEALESGILAFGQGKAQELTIPKGAVSEIVTLSETFNQMAALLAER 381

Query: 442 INKRKMEIEVMQLCSILEATSD--GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
             +  ++    +   +++  SD      ++ +G +   +  V+K+ G P E + RK   +
Sbjct: 382 -EQAILDSRGNRFARLIDGMSDKSFYCSLDPDGQLAQVSEGVTKVLGIPPELLKRKYQRL 440

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL--T 557
           F           Y    L        +   + +  + + L + +           S+   
Sbjct: 441 FSANPLNEKNWEYTDLALKGQNVPPHQIELVDAKGQARRLDVFMQPLVSDTGELMSVEML 500

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
             D++E        +   + A +       
Sbjct: 501 FTDVTEQFSAAAWSNAVLEAAPEAMLIVDQ 530


>gi|300866811|ref|ZP_07111490.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
 gi|300335193|emb|CBN56650.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
          Length = 1043

 Score =  424 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 134/785 (17%), Positives = 270/785 (34%), Gaps = 54/785 (6%)

Query: 59  QESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRL 118
              ++     +SE  F        V   W  D        ++   +  G    + IG   
Sbjct: 128 DRLLAEAARQESEERFEIMADTAPV-MIWMSDTDKLCDYFNKPWLEFTGRTLAEEIGNGW 186

Query: 119 CDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSG 177
                   ++   +        +  +  +  L   +G   Y  +   A+P ++ +  F G
Sbjct: 187 AQGVHPDDVERCLDTYTTAFDARLDFKIEYRLKRFDGE--YRWLLDTAIPRFNADGTFVG 244

Query: 178 FRGFGIVHVNRVDNDPRAL--GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR 235
           + G  I   +R+  +              + L   +  + ++ +         +P   + 
Sbjct: 245 YIGSCIDISDRIQAEYERANALAATQATANALAASEARYRAIGESIPFGVWICNPNGSIN 304

Query: 236 MKN--------------KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLN 281
             +              + S L+      D      ++    +  S    +  F  I+ N
Sbjct: 305 YLSDSFLELIGMTLEECQKSGLSGKLPPADVDRTCSEWRECINSGSVWDCEHKFLGIDGN 364

Query: 282 QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE----TVDKCPIPFFVYS 337
            +T       ++++S     ++      +     +       +     ++     F  + 
Sbjct: 365 YHTILSRGVPVRDSSGAIANWVGINLDITERKQTEAALQKASQEIVNILESIGDGFASFD 424

Query: 338 HG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA 396
                 Y N     +   +    +            P+L D    + ++  +++      
Sbjct: 425 GEWRYTYINRKGEEILGKQRSQILGKIVWE----VFPELKDTPYYEQILQAKAENLNFEY 480

Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
                 +        A+ + P  +               +  + ++ +  +     +L S
Sbjct: 481 EHLFPPL---DNRWFALRWHPTPE--------GMCVYFQDITERKLTEAALRATEEKLKS 529

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV--FLEQNTPSVMNHYLT 514
            + A S GI   +  G I   N    ++ GY  E + R               +    + 
Sbjct: 530 FVAAASIGIVFADIYGSITDANAEFLRIVGYSREHLRRGELRWTEITPPEYLPLDEQSIK 589

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY-SLTMHDISEWKQEKNKLSH 573
           E     +    EK  +    +   + + I    +          + D++E KQ +  L  
Sbjct: 590 EGKKTGVSPPYEKEYI--RSDGSRVPVLIGFILVGEQREESVAFILDLTERKQLEAALHQ 647

Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
             +   + +  K +FLA +SHE+RTPL A++G+++++++++F      +       IDR+
Sbjct: 648 RAEELLQANRLKDEFLATLSHELRTPLNAMLGWTQLLRSRKF---DEEKTARALETIDRN 704

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693
              +  ++ DLLD+S+I +GK+ L+   V L   V  AI  V   A  K I I       
Sbjct: 705 TKSLAALIEDLLDVSRIITGKLRLNLRLVDLVSVVEAAIETVIPAAQAKSIQIIPLLDER 764

Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST-----THTSNEEVILRVRDTGVGM 748
           I RI  D   ++Q+  N+LSNAI FTP+GG + I+          N    + V DTG G+
Sbjct: 765 IERISGDSSRLQQVIWNLLSNAIKFTPNGGCVTIAIHRVGSELEGNFCAEIEVTDTGQGI 824

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEII 807
               L      F Q  ++      G GLGL + + +V+ + G     S    KG+   + 
Sbjct: 825 NPEFLPHVFDRFSQADSTTTRSYSGLGLGLAIVRHLVELHGGTVKADSQGSGKGSAFTVR 884

Query: 808 FPLYD 812
            PL +
Sbjct: 885 LPLPE 889



 Score = 68.1 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 17/176 (9%), Positives = 47/176 (26%), Gaps = 10/176 (5%)

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
                 P          E  D  + +   +    +   + +     I + + + +    N
Sbjct: 108 RLGRLVPAVKRALREAQERRDRLLAEAARQESEERFEIMADTAPVMIWMSDTDKLCDYFN 167

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
           +   +  G  + + +   +   +  +         T      L    +        + + 
Sbjct: 168 KPWLEFTGRTLAEEIGNGWAQGVHPDDVERCLDTYTTAFDARL--DFKIEYRLKRFDGEY 225

Query: 539 LSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
             L         +      Y  +  DIS+  Q + +    +  A   +   ++ LA
Sbjct: 226 RWLLDTAIPRFNADGTFVGYIGSCIDISDRIQAEYE----RANALAATQATANALA 277


>gi|153869151|ref|ZP_01998829.1| Signal Transduction Histidine Kinase [Beggiatoa sp. PS]
 gi|152074304|gb|EDN71172.1| Signal Transduction Histidine Kinase [Beggiatoa sp. PS]
          Length = 1630

 Score =  423 bits (1088), Expect = e-116,   Method: Composition-based stats.
 Identities = 138/755 (18%), Positives = 270/755 (35%), Gaps = 39/755 (5%)

Query: 79   IPRTVRFTWNIDAHGYLKEISEELPKTIGNY-AFKMIGMRLCDVS----DILHIDPNNHI 133
                    W  D H      +  + + +      ++ G    D+          D +  +
Sbjct: 853  DNIPQLIFWK-DIHSVFLGCNRRVAQFVQLKNPKEIKGKTDFDLVWKEHAEYFQDQDRRV 911

Query: 134  GDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193
               L     ++   ++    G+      +   +P++  + +  G  G   V         
Sbjct: 912  M--LTNIPEYHTIESITRPNGS--VFWGETNRIPLHDDSGKVVGILG--TVEDITARKQA 965

Query: 194  R-ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS----LTEYYA 248
              AL K  ++  + L  +       + + Y++            KN V       T +  
Sbjct: 966  EDALKKANERVTTVLDSLDSAVYVSDMQTYNVLFVNKYAQKYYNKNDVIGKMCWQTFHIG 1025

Query: 249  HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL---QNNSKESFEYLSH 305
                        L+T E              +           +            Y   
Sbjct: 1026 QTGPCNFCTNAQLITEEGQPTDVHTWEFEDTVQNRWFYVQDRAIPWDDGRLVRLSVYTDI 1085

Query: 306  RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAG 364
                       E E       +   +   + +  GN    N  +L +T Y S D++    
Sbjct: 1086 TPRKRALEALREREAYLHAIFENAAVGIMLANAEGNFINCNIKWLEMTGY-SCDELYQLT 1144

Query: 365  GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
             L                P+     D    +       ++ N  +            NQ 
Sbjct: 1145 YLDVTHPNDIEISRQHFGPLTRNAID----SYHIEKRFVRKNG-SFFWADVSVTVIRNQQ 1199

Query: 425  PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
                   G+  +  + +  +  +     +   ++E  ++ I     +  +   N A  + 
Sbjct: 1200 GIFDSVVGVIVDITERKQAEEALRASEARYRGVVEDQTELICRFLPDTTLTFVNHAYCRH 1259

Query: 485  FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
             G   E I+   F+  + +     +  +L ++++      +       T        +  
Sbjct: 1260 LGIQREAIIGTKFSKLIPEVARKDVLAHLQQLINQ-KDSMIVYEHPIETANGHKGWQQWS 1318

Query: 545  IKKLPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
             + +   +           DI+E KQ + KL  AK+ AE  +  KS FLA +SHE+RTPL
Sbjct: 1319 DRAITDDAGRILEIQAVGRDITERKQAEEKLQEAKEAAEAANRAKSAFLANMSHELRTPL 1378

Query: 601  TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
              I+G+++++            Y E    I+RSGN +L ++ND+LD+SKIE+GK+ L+  
Sbjct: 1379 NGILGYAQIMGRDSH---LCENYREGIGIIERSGNYLLTLINDILDLSKIEAGKIELYPT 1435

Query: 661  PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFT 719
                ++ +     + Q+ A +K I       +++P  + AD + ++QI +N+L NA+ FT
Sbjct: 1436 DFYFNQFIQAITEIFQMRAEQKSISFNYQPLSSLPLAVHADEKRLRQILINLLGNAVKFT 1495

Query: 720  PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
              GG I++        ++  +V DTG+G+   +L+    PF Q+ N      EGTGLGL 
Sbjct: 1496 KQGG-IVLKVGLEKE-KIRFQVEDTGIGIATEDLDNIFSPFLQVGNPNYRA-EGTGLGLS 1552

Query: 780  LAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
            + + +VD   G+ ++ S   +G+   ++  L + S
Sbjct: 1553 ITQKLVDMMGGELHVESVLGQGSRFWMVLDLPEVS 1587



 Score =  135 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 45/537 (8%), Positives = 137/537 (25%), Gaps = 51/537 (9%)

Query: 95   LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNT--WYGKTTLWPI 152
              +++++L    G    ++      +++    +  +    + L    +  +         
Sbjct: 594  WLQVNDKLCDLFGYTRDEIFQKEWREITHSDDLAAHLEQRNQLLCGKSDGYTMDKRFIRK 653

Query: 153  EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212
            +G  ++   +L+   + +       F    ++           L +  ++    + +   
Sbjct: 654  DGNTIFT--NLSVRCVRNLAGTVDYF--VVLIQDITERKQAENLLREKEEFLRLIIDNIP 709

Query: 213  GHSSVEKEKYDIFSQQSPPPHL-----RMKNKVSSLTEYYAHKDDV---LKTEKYPLLTS 264
                 ++              L     +  + V           D    L      ++ +
Sbjct: 710  QLIFWKEINNVYLGCNKAFAKLLIESKQPVDVVGKTDFDLNLPFDQAQNLSETDSEIMET 769

Query: 265  EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD-------- 316
            +       E+ +  N      +     L +++ +    L      +     +        
Sbjct: 770  DTPQYHYVEEIYQSNGK-RWVESNKIPLHDSTCQVIGILGTSEDITERKQAELLLTEYNQ 828

Query: 317  --------------EGENLTPETVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDIE 361
                          E +      +D  P   F     ++    N       + K+  +I+
Sbjct: 829  TLERDVAERTRALREQKAFLRLIIDNIPQLIFWKDIHSVFLGCNRRVAQFVQLKNPKEIK 888

Query: 362  IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                   +         +  + VML       I     + +I     +            
Sbjct: 889  GKTDFDLVWKEHAEYFQDQDRRVMLTN-----IPEYHTIESITRPNGSVFWGETNRIPLH 943

Query: 422  NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRA 480
            +   + +   G   +    +  +  ++    ++ ++L++    + + + +   +L  N+ 
Sbjct: 944  DDSGKVVGILGTVEDITARKQAEDALKKANERVTTVLDSLDSAVYVSDMQTYNVLFVNKY 1003

Query: 481  VSKLFGYPVEDILRKPFTVFLEQNT--PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
              K   Y   D++ K            P         I        +       T + + 
Sbjct: 1004 AQKY--YNKNDVIGKMCWQTFHIGQTGPCNFCTNAQLITEEGQPTDVHTWEFEDTVQNRW 1061

Query: 539  LSLRIIIKKLPFSSCY-SLTMHDISEWKQEKNKLSHAKKIAEK--ESSHKSDFLARV 592
              ++                  DI+  K+    L   +       E++     LA  
Sbjct: 1062 FYVQDRAIPWDDGRLVRLSVYTDITPRKRALEALREREAYLHAIFENAAVGIMLANA 1118



 Score =  123 bits (310), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 53/532 (9%), Positives = 133/532 (25%), Gaps = 52/532 (9%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD-----ILHIDPNNHIGDLLKRQ 140
            W+ +        S    + +G    +++    CD               ++I   L + 
Sbjct: 456 LWDWNLETQEVYFSPRWKEMLGYADHEIL--NHCDEWHKRIHQTERAQTMDNIAAYLDK- 512

Query: 141 NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
           +    +           Y+ +    + +++   +   F G  +              ++ 
Sbjct: 513 DIPTYENIHRLQHRHGPYIWVLARGIALWNAQGKAIRFVGTHV--DLTEQKQAEEALRKS 570

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSP---PPHLRMKNKVSSLTEYYAHKDDVLKTE 257
            ++  H  E+     ++                                  H DD+    
Sbjct: 571 QERIRHFFELPLIGMAITSPTKGWLQVNDKLCDLFGYTRDEIFQKEWREITHSDDLAAHL 630

Query: 258 KYP--LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL----SHRNHPSL 311
           +    LL  +       + F   + N          ++N +     ++            
Sbjct: 631 EQRNQLLCGKSDGYTMDKRFIRKDGNTIFTNLSVRCVRNLAGTVDYFVVLIQDITERKQA 690

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYSHGNL-FYANPSFLLLT--KYKSVDDIEIAGGLST 368
                E E      +D  P   F     N+    N +F  L     + VD +        
Sbjct: 691 ENLLREKEEFLRLIIDNIPQLIFWKEINNVYLGCNKAFAKLLIESKQPVDVVGKTDFDLN 750

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
           L      + +     +M   + +                     +        +   + +
Sbjct: 751 LPFDQAQNLSETDSEIMETDTPQYHYVEEIYQSN------GKRWVESNKIPLHDSTCQVI 804

Query: 429 PQNGIEPEDVDTRINK------------------RKMEIEVMQLCSILEATSDGIAIINR 470
              G   +  + +  +                  R +  +   L  I++     I   + 
Sbjct: 805 GILGTSEDITERKQAELLLTEYNQTLERDVAERTRALREQKAFLRLIIDNIPQLIFWKDI 864

Query: 471 EGIILSTNRAVSKLFGY-PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
             + L  NR V++       ++I  K     + +            ++  ++ +     +
Sbjct: 865 HSVFLGCNRRVAQFVQLKNPKEIKGKTDFDLVWKEHAEYFQDQDRRVMLTNIPEYHTIES 924

Query: 530 LGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKI 577
           +       +         L   S        T+ DI+  KQ ++ L  A + 
Sbjct: 925 ITR-PNGSVFWGETNRIPLHDDSGKVVGILGTVEDITARKQAEDALKKANER 975



 Score =  112 bits (279), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 52/424 (12%), Positives = 119/424 (28%), Gaps = 27/424 (6%)

Query: 185 HVNRVDNDPRALGKRLDKKFS-HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL 243
                        +  +K+F   +     G      E  +++        L   +     
Sbjct: 426 QEIDERQQIEKALRASEKRFELAMQGANDGLWDWNLETQEVYFSPRWKEMLGYADHEILN 485

Query: 244 TEYYAHKD---DVLKTEKYPLLTSEESSLPEQEDFHTIN---LNQYTKKQYFGTLQNNSK 297
                HK             +    +  +P  E+ H +                L N   
Sbjct: 486 HCDEWHKRIHQTERAQTMDNIAAYLDKDIPTYENIHRLQHRHGPYIWVLARGIALWNAQG 545

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDK---CPI-PFFVYSHGN-LFYANPSFLLLT 352
           ++  ++      +     +E    + E +      P+    + S        N     L 
Sbjct: 546 KAIRFVGTHVDLTEQKQAEEALRKSQERIRHFFELPLIGMAITSPTKGWLQVNDKLCDLF 605

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
            Y   D+I               +       ++  +SD      +     I+ +      
Sbjct: 606 GYTR-DEIFQKEWREITHSDDLAAHLEQRNQLLCGKSDG----YTMDKRFIRKDGNTIFT 660

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG 472
                    N          +  +  + +  +  +  +   L  I++     I       
Sbjct: 661 -NLSVRCVRNLAGTVDYFVVLIQDITERKQAENLLREKEEFLRLIIDNIPQLIFWKEINN 719

Query: 473 IILSTNRAVSKLF---GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
           + L  N+A +KL      PV+ + +  F + L  +    ++   +EI+  D  Q      
Sbjct: 720 VYLGCNKAFAKLLIESKQPVDVVGKTDFDLNLPFDQAQNLSETDSEIMETDTPQYHYVEE 779

Query: 530 LGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
           +  +  ++   +      L  S+        T  DI+E KQ +  L+   +  E++ + +
Sbjct: 780 IYQSNGKR--WVESNKIPLHDSTCQVIGILGTSEDITERKQAELLLTEYNQTLERDVAER 837

Query: 586 SDFL 589
           +  L
Sbjct: 838 TRAL 841



 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 37/329 (11%), Positives = 90/329 (27%), Gaps = 21/329 (6%)

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL--SAYFDEGENLTPETVD 327
             +     +       +           +    L                 E      + 
Sbjct: 391 ALRNAEDHLKEYNRILEIQVAERTEELAQQNIRLQQEIDERQQIEKALRASEKRFELAMQ 450

Query: 328 KCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
                 + ++      Y +P +  +  Y   + +         +   + +         L
Sbjct: 451 GANDGLWDWNLETQEVYFSPRWKEMLGYADHEILNHCDEWHKRIHQTERAQTMDNIAAYL 510

Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
                  I     +H +Q      + +        N   + +   G   +  + +  +  
Sbjct: 511 ----DKDIPTYENIHRLQHRHGPYIWVLARGIALWNAQGKAIRFVGTHVDLTEQKQAEEA 566

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
           +     ++    E    G+AI +     L  N  +  LFGY  ++I +K +      +  
Sbjct: 567 LRKSQERIRHFFELPLIGMAITSPTKGWLQVNDKLCDLFGYTRDEIFQKEWREITHSDDL 626

Query: 507 SVMNHYLTEILSLDLRQ-TLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISE 563
           +       ++L       T++K  +         +L +   +        + + + DI+E
Sbjct: 627 AAHLEQRNQLLCGKSDGYTMDKRFIRKDGNTIFTNLSVRCVRNLAGTVDYFVVLIQDITE 686

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARV 592
            KQ +N L             K +FL  +
Sbjct: 687 RKQAENLL-----------REKEEFLRLI 704


>gi|254474320|ref|ZP_05087709.1| two component sensor kinase [Pseudovibrio sp. JE062]
 gi|211956595|gb|EEA91806.1| two component sensor kinase [Pseudovibrio sp. JE062]
          Length = 767

 Score =  423 bits (1087), Expect = e-116,   Method: Composition-based stats.
 Identities = 186/639 (29%), Positives = 318/639 (49%), Gaps = 20/639 (3%)

Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS 242
           +   N   + P         +     + ++  + V     +   +    P       V+ 
Sbjct: 130 VARENTGLSKPEQDAFDKIARALGAEKKEEQSAKVAVAPAEAVEEVPATPEEAAAVAVAE 189

Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTI----NLNQYTKKQYFGTLQNNSKE 298
                    +        ++       P +E         N+      +    ++  ++ 
Sbjct: 190 TDVVEHEASEETAKTPDNIIPLPAEPTPREEAIEAEPKQDNVTHVVLPRVPPDIEEAAER 249

Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVD 358
           + E         + A  D      P  +D+ PI   V    ++ YAN + L L  Y+  +
Sbjct: 250 AREKTGRIPDKPIVAPID------PRLLDRLPIGVAVVRDRDVVYANDTLLELLGYERFE 303

Query: 359 DIEIAGGLSTLLDAPK----LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
            +  AGGL  +   P+     S     + V +  ++   ++  AR+H + WN   +L ++
Sbjct: 304 ALNEAGGLEAIFAEPEECPTPSPQTVDRIVHVRLAEGGVLSVDARMHAVPWNGAQALMIS 363

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII 474
            +   +     +           V +      +   + +L S+L   +DG+ ++++ GII
Sbjct: 364 VVEKIQNEATADTSAPAQHTSAPVASSSQVEHLHTRIEELESVLATATDGVLVMDQRGII 423

Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGS 532
            S N +   LF    +D+L  PFT FL   +      YL  +++  +   L   +  +  
Sbjct: 424 RSANHSAEALFNASEDDLLGAPFTTFLADESHIAALDYLDGLVANGVSSVLNDGREIICQ 483

Query: 533 TKEEKLLSLRIIIKKLP--FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
           T +  +    + + ++       +   + DI+++K+ + +L  A+  AE+ ++HKS++L 
Sbjct: 484 TLDGDIFPTFLSMGRVSSANEQLFCAVLRDITQFKRAEEELVSARYKAEEANTHKSEYLT 543

Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650
           ++SHEIRTPL A+IGFSEV++ +RFG LGN RY EYA  I RS + +L ++NDLLD++KI
Sbjct: 544 KISHEIRTPLNAVIGFSEVMQEERFGELGNVRYKEYARDIHRSCSHMLTLINDLLDLAKI 603

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710
           E+GKM+L FE VS  + ++E ++L+Q  ANE+R++IR S   ++P+I+AD ++++QI LN
Sbjct: 604 EAGKMDLAFEAVSAADIINECVALLQPQANEQRVIIRASTPLSVPKIVADPKTLRQITLN 663

Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           +LSNAI F  SGGQ+I+S     N EV LRVRDTG GM+  +LE A++PF ++  S    
Sbjct: 664 LLSNAIKFNRSGGQVIVSLVLDPNGEVHLRVRDTGHGMSKADLEAALQPFRRLNASAS-- 721

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            EG+GLGLPL KA+V+AN   F I S   +GTL E+ FP
Sbjct: 722 TEGSGLGLPLTKALVEANRASFSINSEEDEGTLAEVTFP 760


>gi|298243600|ref|ZP_06967407.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
            racemifer DSM 44963]
 gi|297556654|gb|EFH90518.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
            racemifer DSM 44963]
          Length = 1121

 Score =  422 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 113/743 (15%), Positives = 242/743 (32%), Gaps = 49/743 (6%)

Query: 85   FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQNTW 143
              W     G +   ++   +       ++              +    +    L     +
Sbjct: 394  LVWTTSPDGRVDYCNQRFQEVTQADFEQIRDYGWRQYLHPEDAERVLMLRQHSLTTGELF 453

Query: 144  YGKTTLWPIEG-TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
              +      +G T  Y      A+P+     +    + FG               K  ++
Sbjct: 454  ESE--HRLKDGQTGAYRWFLARAMPVRDEAGQIV--KWFGTCTDIDEQKQTEQRLKESEE 509

Query: 203  KFSHLHEIKKGHSSVEKEKYDIFSQQSP-------PPHLRMKNKVSSLTEYYAHKDDVLK 255
            +F  L E       V +                         ++ + L   +    +  +
Sbjct: 510  QFRVLAETVPQLVWVARPDGQHEYTNQHWCDYTGFTLENVQSDRWAHLQCIHPDDRERNR 569

Query: 256  TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
                  L + +    E+   H               ++N + +  ++             
Sbjct: 570  ALWQHALETGDMFEYEERLRHAQTGEYRWFLARALPVRNEAGQIVKWFGTSTDIEEQKRV 629

Query: 316  D----EGENLTPETVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
            +    E +       +  P   +V     L  Y N  +   T             L   L
Sbjct: 630  EQHLKESQESLRVLAETVPQLVWVRRSDGLYEYTNQRWCDYTGLTLEQV---QSDLWAYL 686

Query: 371  DAPKLSDNNAIKPVMLYRSD-RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
                  D    +  +    D  T     AR+   Q        +        ++  + + 
Sbjct: 687  QVIHPGDREGNRAHLQRALDTGTMYEHEARVRNAQT--GEYRWLLMRAMPVRDETGQIVK 744

Query: 430  QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYP 488
              G   +  + +  +  +     ++ +++++   GI  +   E +++  N A   + GY 
Sbjct: 745  WFGTGTDIDERKRMEEALRQSQERIRALIDSNIIGIVSVEGEEDVLVEANDAYLHMTGYT 804

Query: 489  VEDILRK--PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
             ED+  +              +    L E+++       E   +        + +  +I 
Sbjct: 805  QEDVRSRALSVESTTPPEHAPLFQRALQELVTRGQHTPFETELVCQDGSRLPVLVGGVIF 864

Query: 547  KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
            +          + D S  K+ + +              K DF++  SHE+R PLTA+   
Sbjct: 865  QERP-RRVVAFVLDNSARKELEQR--------------KDDFISMASHELRNPLTALKMQ 909

Query: 607  SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
            + ++  Q              + +    N ++ +V +LLD+SKI++G++    E V LD 
Sbjct: 910  TTLLHRQL---AKQGIQAPALSSMKTQINKLIRLVEELLDVSKIQAGRLEYRQETVDLDA 966

Query: 667  AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726
             + E  + +Q       I++R +   ++   LAD   + Q+  N+LSNAI ++P    + 
Sbjct: 967  LLREIANTMQQTNPSHTIVMRGAVQTSL---LADRDRLGQVFTNLLSNAIKYSPGAETVE 1023

Query: 727  ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
            +  + T +  V +RVRD G+G+   + +K  + F ++  S Q    G G+GL +   +V 
Sbjct: 1024 MDLSATEDA-VTIRVRDHGLGIPREQRDKIFERFYRVAGSTQRAIPGLGMGLYIVAEIVK 1082

Query: 787  ANMGKFYIFSTPAKGTLIEIIFP 809
             + G   + S    G+   +  P
Sbjct: 1083 RHGGTITVESDVGNGSTFTVTLP 1105



 Score =  116 bits (291), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 44/511 (8%), Positives = 120/511 (23%), Gaps = 24/511 (4%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + +D    +   +      +G     ++G      +  L            K+      
Sbjct: 29  LFVLDEADTIVYANASAQAMLGAAPETLVGNSFWRCAPQLVSTSLYQAVRKTKQTRALTE 88

Query: 146 KTTLWPIEGTNLYVPIDLAALP-IYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
              + P+    +   + +   P I     +F    G        V          LD   
Sbjct: 89  VEYVSPV----IQTWLHVHLSPTIGGLTLQF-HEMGVPAHCQETVPQRESLCMDVLDNVH 143

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
           + +  +      ++  +  + S       +  K  V       +              + 
Sbjct: 144 AGIVFLTPEGIVLDINEIPLNSAHIRREEVVGKPLVEGPWWSSSPPSQAQLRAAIARASK 203

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
            E+ +  +                     +        +      +     +   +    
Sbjct: 204 GET-VHFEALVQPREGMNLHLAFAITPRMDAEHHIKYLVLAGIDITARKRAEADIHTF-- 260

Query: 325 TVDKCPIPFFVYSHGNLFY-ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
            +D  P  F+           N  +      +S ++ +  G +  L              
Sbjct: 261 -IDAIPQLFWTGRPDGYHDSFNQRW-RDYTCQSTEEAQGEGWMQCLHPED---RQRVRSV 315

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
                          RL                     N+  + +   G   +  + +  
Sbjct: 316 WQRTVQTGGVYETELRLR--HGTTGEYRWFLVRALPVRNETGQIVKWAGTCTDIEEQKRT 373

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
           +++++     L  + E     +   + +G +   N+   ++     E I    +  +L  
Sbjct: 374 EQQLKESREHLHVLTEMVPQLVWTTSPDGRVDYCNQRFQEVTQADFEQIRDYGWRQYLHP 433

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKE-EKLLSLRIIIKKLPFSSC----YSLTM 558
                +       L+    +  E        +             +   +     +  T 
Sbjct: 434 EDAERVLMLRQHSLTTG--ELFESEHRLKDGQTGAYRWFLARAMPVRDEAGQIVKWFGTC 491

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
            DI E KQ + +L  +++     +      +
Sbjct: 492 TDIDEQKQTEQRLKESEEQFRVLAETVPQLV 522



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/78 (14%), Positives = 26/78 (33%)

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
               L +ILE     + +++    I+  N +   + G   E ++   F     Q   + +
Sbjct: 14  SHETLLTILETLPGALFVLDEADTIVYANASAQAMLGAAPETLVGNSFWRCAPQLVSTSL 73

Query: 510 NHYLTEILSLDLRQTLEK 527
              + +         +E 
Sbjct: 74  YQAVRKTKQTRALTEVEY 91


>gi|94263975|ref|ZP_01287777.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93455647|gb|EAT05829.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 1048

 Score =  422 bits (1085), Expect = e-115,   Method: Composition-based stats.
 Identities = 124/647 (19%), Positives = 245/647 (37%), Gaps = 39/647 (6%)

Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA 248
                  +     ++ +    +++  +  E+                M + ++ L     
Sbjct: 39  AKQQTEVMQYYQQQEGTSTAALRRHQAGWEEFDRRYRQ--------VMLSSIAGLALMLV 90

Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
               V++    P+     +              +  ++     +   ++ +   LS  + 
Sbjct: 91  VSFLVMRRFINPMYKIVAALRDLAYASGKPPDLEGIEQLQNDRILELTELANAVLSFHDA 150

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
            +     ++        VD+ P    +    GN+ YAN +FL  T Y+ ++ +    G +
Sbjct: 151 LNDRHRVEKELRKLSLAVDQSPSGIIITDLDGNIEYANQAFLACTGYQKMEVL----GRN 206

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
                 + +  +  + +    +              +                       
Sbjct: 207 PRFLKDESTLESHYQEMWNTIAAGHTWKGEFYN---RRKDGREYIEANTVAPIKQADGSI 263

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLC-----------SILEATSDGIAIINREGIILS 476
                I+ +  D    + ++      L            +I+E  +DGI  I+++G ILS
Sbjct: 264 TNYLAIKDDVTDKMKMEVELLRHRDHLAELVEEQTVSIKAIVETAADGIITIDQQGKILS 323

Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTK 534
            N A   +FGYP  +++       + +   S  + YL   L     + +      +   +
Sbjct: 324 FNPAAEVIFGYPAGEMIGSKINRLMPEPHRSQHDQYLRNYLQSGTAKVINTQVEVMALRR 383

Query: 535 EEKLLSLR--IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
           +     L   +   ++     ++    DIS  K+ +  L  A++ AE  +  KSDFLA +
Sbjct: 384 DGSTFPLSLAVSAMEIGGEKRFTAIFRDISSQKEAEKALVTARQAAEAANRTKSDFLANM 443

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHEIRTP+ A+IG S +       P    +  +Y   +  S + +L I+ND+LD+SKIES
Sbjct: 444 SHEIRTPMNAVIGLSHICLQTELTP----KQRDYLEKVHNSAHSLLGILNDILDLSKIES 499

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNI 711
           G++ +   P +L+E +    +LV      K +  +      +P  +  D   + Q+  N+
Sbjct: 500 GRLEVEEIPFNLEEVLDRLHTLVDARIAAKPLQFKLDLPPEVPVNLRGDPLRLGQVLTNL 559

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEE---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
           + NA+ FT  G   +        E+   +   VRD G+GMT  +  +  +PF Q   S  
Sbjct: 560 VGNAVKFTEEGEIAVTVAVVAEAEQEITLSFTVRDNGIGMTQEQCARLFQPFSQADTSTT 619

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            +  GTGLGL +++ +V+   G+  + S   KG+      PL   + 
Sbjct: 620 RKYGGTGLGLSISRQLVELMGGEIRVESEAGKGSSFIFTLPLQKDAA 666



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/258 (9%), Positives = 66/258 (25%), Gaps = 18/258 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147
            D  G ++  ++      G    +++G     + D   ++     + + +   +TW G+ 
Sbjct: 178 TDLDGNIEYANQAFLACTGYQKMEVLGRNPRFLKDESTLESHYQEMWNTIAAGHTWKGEF 237

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI---------VHVNRVDNDPRALGK 198
                +G        +A  PI   +   + +              V + R  +    L +
Sbjct: 238 YNRRKDGREYIEANTVA--PIKQADGSITNYLAIKDDVTDKMKMEVELLRHRDHLAELVE 295

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP------PHLRMKNKVSSLTEYYAHKDD 252
                   + E          ++  I S           P   M     +      H+  
Sbjct: 296 EQTVSIKAIVETAADGIITIDQQGKILSFNPAAEVIFGYPAGEMIGSKINRLMPEPHRSQ 355

Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
             +  +  L +     +  Q +   +  +  T                 + +     S  
Sbjct: 356 HDQYLRNYLQSGTAKVINTQVEVMALRRDGSTFPLSLAVSAMEIGGEKRFTAIFRDISSQ 415

Query: 313 AYFDEGENLTPETVDKCP 330
              ++      +  +   
Sbjct: 416 KEAEKALVTARQAAEAAN 433



 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/145 (11%), Positives = 42/145 (28%), Gaps = 11/145 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNT----W 143
           ID  G +   +       G  A +MIG ++  +    H   ++  + + L+         
Sbjct: 315 IDQQGKILSFNPAAEVIFGYPAGEMIGSKINRLMPEPHRSQHDQYLRNYLQSGTAKVINT 374

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +      +G+   + + ++A+ I    R F+      I        +         + 
Sbjct: 375 QVEVMALRRDGSTFPLSLAVSAMEIGGEKR-FT-----AIFRDISSQKEAEKALVTARQA 428

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQ 228
               +  K    +    +       
Sbjct: 429 AEAANRTKSDFLANMSHEIRTPMNA 453


>gi|113969059|ref|YP_732852.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-4]
 gi|113883743|gb|ABI37795.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-4]
          Length = 1767

 Score =  422 bits (1085), Expect = e-115,   Method: Composition-based stats.
 Identities = 127/781 (16%), Positives = 264/781 (33%), Gaps = 51/781 (6%)

Query: 59   QESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRL 118
               V+      + +  V +  P  +      D  G +   +       G  A  M+G+++
Sbjct: 501  FTDVTEQFSAAAWSNAVLEAAPEAMLIV---DQMGLIVFSNTRCQILFGYEASAMLGLQV 557

Query: 119  CDVSDILHID--PNNHIGDLLKRQNTW---YGKTTLWPIEGTNLYVPIDLAALPIYSRNR 173
              +           + +  L + ++              +G      I L+ LP  +  R
Sbjct: 558  ESLLPEALRSNHARDRLQFLREGRDRPMANAKHVRALKADGGEFVAEIALSILPADNEGR 617

Query: 174  EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH 233
                      +             +  + +F  L     G     +       +      
Sbjct: 618  RQVAAS----IRDMTQKLAVEQKIRDSELRFRGLVTNIPGAVYRTRIGDVWVMEYVSENI 673

Query: 234  LRMKNKVSS---------LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYT 284
              +    +S                +D  L  +      +++ +   +      + +   
Sbjct: 674  ADITGYAASQFIENRQRTFESLILEEDRALCHQHIDRALAQQETFEVEYRIRHRDGSVRW 733

Query: 285  KKQYFGTLQNNSKESFEYLSHRNHPSLSA----YFDEGENLTPETVDKCPIPF----FVY 336
              +       +      +    +  + S       +          +  P       ++ 
Sbjct: 734  VHEKGKASYTDEGFPLWFDGSIDDITESKLALVELESSRQQLTNITESIPCTVYQLRWIS 793

Query: 337  SHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIA 395
                   + + +   +      D ++    ++  +      D    + V           
Sbjct: 794  PVDRTFTFLSGAAYHMLGLHRDDLLKDFNIIAERIF-----DEERSEVVRALAGKSEDKL 848

Query: 396  ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
               R    +    ++  M              +  NG   +  + +  + ++ +      
Sbjct: 849  QWVREFRYRHPNGSTRWMEAGASGHICDDGAII-WNGYVMDITERKAMEEELAVSEAHFK 907

Query: 456  SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
            ++ + ++ GI  I+ +G+IL  N    +  G   E +        L             E
Sbjct: 908  ALFDGSTIGIVNIDAKGVILDCNDQYCEDMGQSRESLCGMSIFEVLSLQDKETAKAQFKE 967

Query: 516  ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKL 571
            +    +               + L + + +  L  S        ++M D++E K   ++L
Sbjct: 968  LAEGRVDH-YRGERSFIRPNGEPLWMTVNVSALFDSQKRFESAVVSMVDMTELKLLSDEL 1026

Query: 572  SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
              AK+ A+  S  K DFLA +SHEIRTP+ AIIG S++          + +   Y   I+
Sbjct: 1027 LVAKEEADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTEL----DKKQKNYVEKIE 1082

Query: 632  RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
            R+   +L I+ND+LD SKIE+GK+++   P  LD  + +   +    A  K++ +  + A
Sbjct: 1083 RASKSLLSIINDILDFSKIEAGKLDIESVPFQLDTMLEDLSDMFSEKAAHKQLELLFAVA 1142

Query: 692  NNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGV 746
             N+PR +  D   + Q+ +N+++NAI FT  G ++++S      +     +   VRD+G+
Sbjct: 1143 PNVPRHLFGDSLRLGQVLINLMNNAIKFTERG-EVLLSLNLVEQQNDDVVLRFSVRDSGI 1201

Query: 747  GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
            G+T  +  K  K F Q   S   +  GTGLGL + K +V+   G   + S    G+    
Sbjct: 1202 GLTAEQQAKLFKSFSQADTSTTRKYGGTGLGLAICKQLVELMGGTIGVESQFGHGSTFYF 1261

Query: 807  I 807
             
Sbjct: 1262 T 1262



 Score =  114 bits (285), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 55/518 (10%), Positives = 144/518 (27%), Gaps = 36/518 (6%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI--GDLLKRQNT 142
           F  ++DA G L ++SE + K +G    +++  +   +     ++  N       LK QN 
Sbjct: 405 FYCSLDASGQLAQVSEGVTKVLGMSP-ELLKRKYQRLFTANPLNEKNWEYTDLALKGQNV 463

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA---LGKR 199
              +  L    G    + + +   P+ S   E        +           A       
Sbjct: 464 PSHQVELLDAGGHPRRLDLFM--QPLVSDTGELMSVE--MLFTDVTEQFSAAAWSNAVLE 519

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
              +   + +              +F  ++          +        H  D L+  + 
Sbjct: 520 AAPEAMLIVDQMGLIVFSNTRCQILFGYEASAMLGLQVESLLPEALRSNHARDRLQFLRE 579

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL----QNNSKESFEYLSHRNHPSLSAYF 315
                   +  +       +  ++  +     L    +   + +          ++    
Sbjct: 580 GR--DRPMANAKHVRALKADGGEFVAEIALSILPADNEGRRQVAASIRDMTQKLAVEQKI 637

Query: 316 DEGENLTPETVDKCPIPFFVYSHGNL---FYANPSFLLLTKYKSVDDIEIAGG-LSTLLD 371
            + E      V   P   +    G++    Y + +   +T Y +   IE       +L+ 
Sbjct: 638 RDSELRFRGLVTNIPGAVYRTRIGDVWVMEYVSENIADITGYAASQFIENRQRTFESLIL 697

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
               +  +    +    + +       R   I+    +   +              +  +
Sbjct: 698 EEDRALCHQH--IDRALAQQETFEVEYR---IRHRDGSVRWVHEKGKASYTDEGFPLWFD 752

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN----REGIILSTNRAVSKLFGY 487
           G   +  ++++   ++E    QL +I E+    +  +      +      + A   + G 
Sbjct: 753 GSIDDITESKLALVELESSRQQLTNITESIPCTVYQLRWISPVDRTFTFLSGAAYHMLGL 812

Query: 488 PVEDILRKP--FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
             +D+L+        +     S +   L       L+    +             +    
Sbjct: 813 HRDDLLKDFNIIAERIFDEERSEVVRALAGKSEDKLQWV--REFRYRHPNGSTRWMEAGA 870

Query: 546 KKLPFSSCYS---LTMHDISEWKQEKNKLSHAKKIAEK 580
                          + DI+E K  + +L+ ++   + 
Sbjct: 871 SGHICDDGAIIWNGYVMDITERKAMEEELAVSEAHFKA 908


>gi|114048796|ref|YP_739346.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-7]
 gi|113890238|gb|ABI44289.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-7]
          Length = 1767

 Score =  422 bits (1085), Expect = e-115,   Method: Composition-based stats.
 Identities = 127/781 (16%), Positives = 264/781 (33%), Gaps = 51/781 (6%)

Query: 59   QESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRL 118
               V+      + +  V +  P  +      D  G +   +       G  A  M+G+++
Sbjct: 501  FTDVTEQFSAAAWSNAVLEAAPEAMLIV---DQMGLIVFSNTRCQILFGYEASAMLGLQV 557

Query: 119  CDVSDILHID--PNNHIGDLLKRQNTW---YGKTTLWPIEGTNLYVPIDLAALPIYSRNR 173
              +           + +  L + ++              +G      I L+ LP  +  R
Sbjct: 558  ESLLPEALRSNHARDRLQFLREGRDRPMANAKHVRALKADGGEFVAEIALSILPADNEGR 617

Query: 174  EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH 233
                      +             +  + +F  L     G     +       +      
Sbjct: 618  RQVAAS----IRDMTQKLAVEQKIRDSELRFRGLVTNIPGAVYRTRIGDVWVMEYVSENI 673

Query: 234  LRMKNKVSS---------LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYT 284
              +    +S                +D  L  +      +++ +   +      + +   
Sbjct: 674  ADITGYAASQFIENRQRTFESLILEEDRALCHQHIDRALAQQETFEVEYRIRHRDGSVRW 733

Query: 285  KKQYFGTLQNNSKESFEYLSHRNHPSLSA----YFDEGENLTPETVDKCPIPF----FVY 336
              +       +      +    +  + S       +          +  P       ++ 
Sbjct: 734  VHEKGKASYTDEGFPLWFDGSIDDITESKLALVELESSRQQLTNITESIPCTVYQLRWIS 793

Query: 337  SHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIA 395
                   + + +   +      D ++    ++  +      D    + V           
Sbjct: 794  PVDRTFTFLSGAAYHMLGLHRDDLLKDFNIIAERIF-----DEERSEVVRALAGKSEDKL 848

Query: 396  ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
               R    +    ++  M              +  NG   +  + +  + ++ +      
Sbjct: 849  QWVREFRYRHPNGSTRWMEAGASGHICDDGAII-WNGYVMDITERKAMEEELAVSEAHFK 907

Query: 456  SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
            ++ + ++ GI  I+ +G+IL  N    +  G   E +        L             E
Sbjct: 908  ALFDGSTIGIVNIDAKGVILDCNDQYCEDMGQSRESLCGMSIFEVLSLQDKETAKAQFKE 967

Query: 516  ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKL 571
            +    +               + L + + +  L  S        ++M D++E K   ++L
Sbjct: 968  LAEGRVDH-YRGERSFIRPNGEPLWMTVNVSALFDSQKRFESAVVSMVDMTELKLLSDEL 1026

Query: 572  SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
              AK+ A+  S  K DFLA +SHEIRTP+ AIIG S++          + +   Y   I+
Sbjct: 1027 LVAKEEADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTEL----DKKQKNYVEKIE 1082

Query: 632  RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
            R+   +L I+ND+LD SKIE+GK+++   P  LD  + +   +    A  K++ +  + A
Sbjct: 1083 RASKSLLSIINDILDFSKIEAGKLDIESVPFQLDTMLEDLSDMFSEKAAHKQLELLFAVA 1142

Query: 692  NNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGV 746
             N+PR +  D   + Q+ +N+++NAI FT  G ++++S      +     +   VRD+G+
Sbjct: 1143 PNVPRHLFGDSLRLGQVLINLMNNAIKFTERG-EVLLSLNLVEQQNDDVVLRFSVRDSGI 1201

Query: 747  GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
            G+T  +  K  K F Q   S   +  GTGLGL + K +V+   G   + S    G+    
Sbjct: 1202 GLTAEQQAKLFKSFSQADTSTTRKYGGTGLGLAICKQLVELMGGTIGVESQFGHGSTFYF 1261

Query: 807  I 807
             
Sbjct: 1262 T 1262



 Score =  114 bits (285), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 55/518 (10%), Positives = 144/518 (27%), Gaps = 36/518 (6%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI--GDLLKRQNT 142
           F  ++DA G L ++SE + K +G    +++  +   +     ++  N       LK QN 
Sbjct: 405 FYCSLDASGQLAQVSEGVTKVLGMSP-ELLKRKYQRLFTANPLNEKNWEYTDLALKGQNV 463

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA---LGKR 199
              +  L    G    + + +   P+ S   E        +           A       
Sbjct: 464 PSHQVELLDAGGHPRRLDLFM--QPLVSDTGELMSVE--MLFTDVTEQFSAAAWSNAVLE 519

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
              +   + +              +F  ++          +        H  D L+  + 
Sbjct: 520 AAPEAMLIVDQMGLIVFSNTRCQILFGYEASAMLGLQVESLLPEALRSNHARDRLQFLRE 579

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL----QNNSKESFEYLSHRNHPSLSAYF 315
                   +  +       +  ++  +     L    +   + +          ++    
Sbjct: 580 GR--DRPMANAKHVRALKADGGEFVAEIALSILPADNEGRRQVAASIRDMTQKLAVEQKI 637

Query: 316 DEGENLTPETVDKCPIPFFVYSHGNL---FYANPSFLLLTKYKSVDDIEIAGG-LSTLLD 371
            + E      V   P   +    G++    Y + +   +T Y +   IE       +L+ 
Sbjct: 638 RDSELRFRGLVTNIPGAVYRTRIGDVWVMEYVSENIADITGYAASQFIENRQRTFESLIL 697

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
               +  +    +    + +       R   I+    +   +              +  +
Sbjct: 698 EEDRALCHQH--IDRALAQQETFEVEYR---IRHRDGSVRWVHEKGKASYTDEGFPLWFD 752

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN----REGIILSTNRAVSKLFGY 487
           G   +  ++++   ++E    QL +I E+    +  +      +      + A   + G 
Sbjct: 753 GSIDDITESKLALVELESSRQQLTNITESIPCTVYQLRWISPVDRTFTFLSGAAYHMLGL 812

Query: 488 PVEDILRKP--FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
             +D+L+        +     S +   L       L+    +             +    
Sbjct: 813 HRDDLLKDFNIIAERIFDEERSEVVRALAGKSEDKLQWV--REFRYRHPNGSTRWMEAGA 870

Query: 546 KKLPFSSCYS---LTMHDISEWKQEKNKLSHAKKIAEK 580
                          + DI+E K  + +L+ ++   + 
Sbjct: 871 SGHICDDGAIIWNGYVMDITERKAMEEELAVSEAHFKA 908


>gi|117925672|ref|YP_866289.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117609428|gb|ABK44883.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1177

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 113/645 (17%), Positives = 228/645 (35%), Gaps = 29/645 (4%)

Query: 185  HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244
             +     +     + L               +    +Y     +    +    ++V    
Sbjct: 392  TLAHSIIEREKRLRTLSTGLEQAPISVLISDTQGNIEYVNPYFEQLTGY--YSHEVLGKN 449

Query: 245  EYYAHKDDVLKTEKYPLLTSEESSLPEQEDF--HTINLNQYTKKQYFGTLQNNSKESFEY 302
                  D         L  +  +  P + +F     N   + +  +   + +N  +   +
Sbjct: 450  PNLLKSDLNPPELFRDLWRTISAGAPWRGEFINRKKNGALHWQMAHIAPVLDNDGQITHF 509

Query: 303  LSHRNHPSLSAYFD----EGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSV 357
            ++     +     D    E            P+  F     G   Y N ++  +T   S 
Sbjct: 510  IALSEEITARKQADAALNESNERFRTLAQVSPVGIFQTDHDGEYIYVNTTWESITGTTSP 569

Query: 358  DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
              +     +  L    +       +  +L            R             +    
Sbjct: 570  QALSSQWDI-HLHPDDQPRVQQRWQETVL---HGNAFHEEYRFLR---GDGTIRWVIGSA 622

Query: 418  FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
              + +         G   +  + +  + ++  E   L S++++  D I     +G  +  
Sbjct: 623  APQRDPDRVIQGFVGTLTDITERKQMELELGKERALLRSLIDSIPDLIFYKRADGTYMGC 682

Query: 478  NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
            NRA       P   ++              ++      +++ +          G   +  
Sbjct: 683  NRAFELFCKRPEAALIGHTDQALFSPELAQLLKSGDELVINKN--SCFSHEATGLFGDGH 740

Query: 538  LLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
             +   I    +               DI++  + + +L  AK+ AE  +  KS+FLA +S
Sbjct: 741  QVPFLIQKSPMHGYQGELLGLIGVARDITQRLRVEQELQQAKEDAEAANRSKSEFLAAMS 800

Query: 594  HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
            HEIRTP+  +IG  E++         N     Y N +  +G+ +L++++++LD+SKIE+G
Sbjct: 801  HEIRTPMNVVIGMGEILLETPL----NAEQTRYINSMQHAGDALLELIDNILDLSKIEAG 856

Query: 654  KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR--ILADLRSVKQIALNI 711
            +M L      LD  V       +L A    + +    A  + +  +L D   V+Q+  N+
Sbjct: 857  RMTLEERAFRLDTMVISITDFFRLQALNHNLSLVVEIAPELEQQYVLGDAGRVRQVLYNL 916

Query: 712  LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
            L NA+ FT  GG + +  +  +N+ +  RV DTG+G+   +LE+    F Q  +S   R 
Sbjct: 917  LGNALKFTEEGG-VSLHLSLDANQHIHTRVSDTGIGIAPQQLERIFDNFTQEDSSVTRRF 975

Query: 772  EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
             GTGLGL + +   +   G+ ++ S   +G+   +  PL  +  P
Sbjct: 976  GGTGLGLAICRRFTELMGGRIWVESIEGQGSTFHMTLPLVLSHTP 1020



 Score =  109 bits (272), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 36/380 (9%), Positives = 103/380 (27%), Gaps = 27/380 (7%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRL----CDVSDILHIDPNNHIGDLLKRQNTWYG 145
           D  G ++ ++    +  G Y+ +++G        D++          +   +     W G
Sbjct: 422 DTQGNIEYVNPYFEQLTGYYSHEVLGKNPNLLKSDLNPPELF---RDLWRTISAGAPWRG 478

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +       G            P+   + + + F    +           A     +++F 
Sbjct: 479 EFINRKKNG--ALHWQMAHIAPVLDNDGQITHF--IALSEEITARKQADAALNESNERFR 534

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQ---SPPPHLRMKNKVSSLTEYYAHKDDV-LKTEKYPL 261
            L ++            +                   +SS  + + H DD     +++  
Sbjct: 535 TLAQVSPVGIFQTDHDGEYIYVNTTWESITGTTSPQALSSQWDIHLHPDDQPRVQQRWQE 594

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD----E 317
                ++  E+  F   +             ++  +    ++      +     +    +
Sbjct: 595 TVLHGNAFHEEYRFLRGDGTIRWVIGSAAPQRDPDRVIQGFVGTLTDITERKQMELELGK 654

Query: 318 GENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
              L    +D  P   F     G     N +F  L   +    +   G     L +P+L+
Sbjct: 655 ERALLRSLIDSIPDLIFYKRADGTYMGCNRAF-ELFCKRPEAAL--IGHTDQALFSPELA 711

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
                   ++   +    +  +   T  +   + +              E +   G+  +
Sbjct: 712 QLLKSGDELVINKN----SCFSHEATGLFGDGHQVPFLIQKSPMHGYQGELLGLIGVARD 767

Query: 437 DVDTRINKRKMEIEVMQLCS 456
                  +++++       +
Sbjct: 768 ITQRLRVEQELQQAKEDAEA 787



 Score = 73.5 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 49/162 (30%), Gaps = 9/162 (5%)

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSI---LEATSDGIAIINREGIILSTNRAVSKLF 485
             +      ++ R     +     +L ++   LE     + I + +G I   N    +L 
Sbjct: 379 GASEFRTLTLEFRTLAHSIIEREKRLRTLSTGLEQAPISVLISDTQGNIEYVNPYFEQLT 438

Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
           GY   ++L K   +      P  +   L   +S           +   K   L      I
Sbjct: 439 GYYSHEVLGKNPNLLKSDLNPPELFRDLWRTISAGAPWRG--EFINRKKNGALHWQMAHI 496

Query: 546 KKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
             +  +      +     +I+  KQ    L+ + +     + 
Sbjct: 497 APVLDNDGQITHFIALSEEITARKQADAALNESNERFRTLAQ 538



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/277 (8%), Positives = 64/277 (23%), Gaps = 10/277 (3%)

Query: 59  QESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRL 118
               ++    +S   F        V   +  D  G    ++       G  + + +  + 
Sbjct: 518 ARKQADAALNESNERFRTLAQVSPVG-IFQTDHDGEYIYVNTTWESITGTTSPQALSSQW 576

Query: 119 CDVSDILH-IDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSG 177
                            + +   N ++ +      +GT     +  +A P    +R   G
Sbjct: 577 DIHLHPDDQPRVQQRWQETVLHGNAFHEEYRFLRGDGTIR--WVIGSAAPQRDPDRVIQG 634

Query: 178 FRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP--PHLR 235
           F   G +              +       L +        ++                 R
Sbjct: 635 F--VGTLTDITERKQMELELGKERALLRSLIDSIPDLIFYKRADGTYMGCNRAFELFCKR 692

Query: 236 MKNKVSSLTEYYAHKDD--VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293
            +  +   T+      +   L      L+ ++ S    +      + +Q         + 
Sbjct: 693 PEAALIGHTDQALFSPELAQLLKSGDELVINKNSCFSHEATGLFGDGHQVPFLIQKSPMH 752

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330
               E    +      +     ++      E  +   
Sbjct: 753 GYQGELLGLIGVARDITQRLRVEQELQQAKEDAEAAN 789


>gi|78222916|ref|YP_384663.1| PAS/PAC sensor hybrid histidine kinase [Geobacter metallireducens
            GS-15]
 gi|78194171|gb|ABB31938.1| PAS/PAC sensor hybrid histidine kinase [Geobacter metallireducens
            GS-15]
          Length = 1313

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 112/596 (18%), Positives = 229/596 (38%), Gaps = 34/596 (5%)

Query: 239  KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE 298
            KV+S       + + +      +   +E     Q++F  +             +    + 
Sbjct: 483  KVTSQLPVRIAQGEQISWRPAEVREEQE----LQDNFRLMENALQNSFSELTAINEELEH 538

Query: 299  SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVD 358
                 +     +  A  +    L   T         +   G++ Y NP+   +  Y + +
Sbjct: 539  RVTERTAELRIAKEAAENSELQLRSITNSAHDAILMMDHQGSISYWNPAAEQILGYSAAE 598

Query: 359  DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
             +        L     L+D+               +  +  L   + + +       +  
Sbjct: 599  AL-GKNLHDLLTPERYLADHLTAFSEFQQTGSGNAVGKTLELFARRKDGQEIEVALSLSA 657

Query: 419  EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
               N         G+  +  + +     + +    L + +E +   I I +R+G I   N
Sbjct: 658  VFLNG---AWNAVGLLRDITEQKRINASLRM----LSAAVEHSPVSIIITDRDGRIEYVN 710

Query: 479  RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
                ++ GY  E++  +   +      P      L E +                K+  L
Sbjct: 711  PKSCQMTGYAFEELRGQNPRIMKGPTHPPEFYKNLWETILSGREWYG--EFHNRRKDGSL 768

Query: 539  LSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHA-------KKIAEKESSHKSD 587
            + +   I  +         +     +I + K+ + +L++        +  AE+ +  KS+
Sbjct: 769  VWVMASISPIYDEKGEITHFVGVREEIEKQKKLQEELANIAQLEKVARDRAEQANRAKSE 828

Query: 588  FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
            FLA +SHEIRTPL AIIG S+++   R     +     Y + +  +G  +  ++ND+LD+
Sbjct: 829  FLAGMSHEIRTPLNAIIGMSDLLAETRL----DGEQSGYLSVVHSAGETLQGLINDILDL 884

Query: 648  SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQ 706
            SKIE+G + L   P SL + + +   +  + A+ K +    S  + +P  ++ D   ++Q
Sbjct: 885  SKIEAGMLQLDSVPFSLRDCIRQLTDITSVKASSKGVTYSFSVKSAVPDWLMGDSLRLRQ 944

Query: 707  IALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQ 762
            + +N++ NA+ FT SGG +++        +    +   V DTG+G+   +L+   + F Q
Sbjct: 945  VLINLVGNAVKFTDSGGSVLLEVEPVQQSDAEVLIRFSVADTGIGIAPEKLDTIFESFSQ 1004

Query: 763  IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
              +S   R  GTGLGL +++ +     G+  + ST  KG+      P   +    +
Sbjct: 1005 ADSSTTRRYGGTGLGLAISRHLAGMMGGEIGVESTVGKGSCFRFTVPFAISRRTEE 1060



 Score = 62.7 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/318 (11%), Positives = 85/318 (26%), Gaps = 30/318 (9%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG--- 145
           +D  G +   +    + +G  A + +G  L D+        + H+    + Q T  G   
Sbjct: 575 MDHQGSISYWNPAAEQILGYSAAEALGKNLHDLLTPERYLAD-HLTAFSEFQQTGSGNAV 633

Query: 146 ----KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
               +      +G  + V + L+A+ +         +   G++          A  + L 
Sbjct: 634 GKTLELFARRKDGQEIEVALSLSAVFLNGA------WNAVGLLRDITEQKRINASLRMLS 687

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
               H         +    + +  + +S         ++                    L
Sbjct: 688 AAVEHSP--VSIIITDRDGRIEYVNPKSCQMTGYAFEELRGQNPRIMKGPTHPPEFYKNL 745

Query: 262 LTSEESSLPEQEDFH--TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
             +  S      +FH    + +          + +   E   ++  R          E  
Sbjct: 746 WETILSGREWYGEFHNRRKDGSLVWVMASISPIYDEKGEITHFVGVREEIEKQKKLQEEL 805

Query: 320 NLTPETVDKCPIPFFVYSHGNLFYANPS---FLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
               +                   AN +   FL    ++    +    G+S LL   +L 
Sbjct: 806 ANIAQLEKVA--------RDRAEQANRAKSEFLAGMSHEIRTPLNAIIGMSDLLAETRL- 856

Query: 377 DNNAIKPVMLYRSDRTCI 394
           D      + +  S    +
Sbjct: 857 DGEQSGYLSVVHSAGETL 874


>gi|118593594|ref|ZP_01550971.1| PAS domain protein [Stappia aggregata IAM 12614]
 gi|118433812|gb|EAV40472.1| PAS domain protein [Stappia aggregata IAM 12614]
          Length = 1563

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 190/627 (30%), Positives = 308/627 (49%), Gaps = 33/627 (5%)

Query: 201  DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
            +++   +  +     + +      F +++       K    +       +   L T K  
Sbjct: 945  EEEDREIEAVAASLETDDAADEREFFEETAAFESEDKAAEVADEPKKTGQVIPLATVKPR 1004

Query: 261  LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
            L+  + S L   E        +   +     L+ + ++            L     E   
Sbjct: 1005 LVPVDTSGLSRPER----QAFRKIAEALGARLEGDLEDFDAPDPEEPVDDLPPEVPEAGP 1060

Query: 321  LTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS---- 376
            + P  +D+ PI   +     + YAN + L +  Y+S+  +  AGGL  L           
Sbjct: 1061 IDPSLLDRLPIGIAIAHDREVLYANKALLRMLGYRSIAALSEAGGLEALFIDDAEELPDE 1120

Query: 377  --DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
              D    + + +  SD   +   A +H++ WN    L ++    +         P +   
Sbjct: 1121 GMDGEVDETMKMRLSDGGVLNVDAHMHSVPWNGSRGLMISITERKVKPAPAAAAPSSPNF 1180

Query: 435  PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
                + R        ++ ++ +ILE  +DG+ ++++ G IL  N +   LF     D++ 
Sbjct: 1181 F--AEVRAELDSARNQIAEMDTILETATDGVLVLDQNGTILKVNGSAEALFSANRSDMIG 1238

Query: 495  KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKL---P 549
             P T FL   +      YL  +    +   L   +  LG      L+ L + I ++    
Sbjct: 1239 APLTEFLAPESHRAAADYLDGLSRNGVASILNDGREVLGKVPTGGLIPLFMTIGRISGTK 1298

Query: 550  FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                Y   + DI++WK  + +L+ AK+ AE  SS KSDFLA++SHEIRTPL AIIGFSEV
Sbjct: 1299 DDVKYCAVLRDITQWKTAEEELTQAKRQAENASSQKSDFLAKISHEIRTPLNAIIGFSEV 1358

Query: 610  IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
            +  +RFGP+GN RY +Y   I  SG+ ++ ++NDLLD+SKIE+GK++L F  VS ++ ++
Sbjct: 1359 MMEERFGPIGNDRYKDYLKDIRTSGSHIMSLINDLLDLSKIEAGKLDLKFSAVSTNDVIN 1418

Query: 670  EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
            E ++L+Q  AN +R++IR S   ++P ++AD RS++QI LN+LSNAI +  SGGQ+I+ST
Sbjct: 1419 ECVALMQPQANRERVIIRASLPESVPDVVADPRSLRQIVLNLLSNAIKYNKSGGQVILST 1478

Query: 730  THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ-------IRGEGTGLGLPLAK 782
               SN EV LRVRDTG GMT+ +L  A++PF Q+  S +       +            K
Sbjct: 1479 ALESNGEVALRVRDTGTGMTSKQLAAALEPFRQLHTSSRGGGTGLGLPLT---------K 1529

Query: 783  AMVDANMGKFYIFSTPAKGTLIEIIFP 809
            A+V+AN   F+I STP +GTL+EIIFP
Sbjct: 1530 ALVEANRASFHIDSTPDQGTLVEIIFP 1556



 Score =  147 bits (372), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 64/332 (19%), Positives = 127/332 (38%), Gaps = 13/332 (3%)

Query: 5   SIISNPEDILTSNCKGNTQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVSN 64
           SI+  P++I   + +      + + I    + E +  E    ++      T ++    ++
Sbjct: 332 SILETPDEIEEGSAE------TAEDIAADADGEDAGSERSEPEAAAVEEATAEDTAGDTD 385

Query: 65  TNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI 124
           T   D  + FVF P  R VRF W +D       +S+E  + +G  +  ++G+   +V++ 
Sbjct: 386 T---DQNDDFVFQPRRRPVRFAWKMDIDQRFTFLSDEFAEVLGPSSTDIVGLTWQEVAEA 442

Query: 125 LHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIV 184
             +DP  HI   L R++TW GKT  WP+ G  L VP+D+AALP + RNR+F G+RGFG+ 
Sbjct: 443 FDLDPRGHIARALDRRDTWSGKTIDWPVSGAALRVPVDMAALPAFDRNRKFEGYRGFGVC 502

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM-KNKVSSL 243
                  +   L          +    +  S   +   D  S++          + V+  
Sbjct: 503 RTADAVPERGDLPT---GPVLAVVGAGETVSQETEAGADQLSEEDIARSADTQPDAVAGA 559

Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303
                     +  ++       ++ +   +D         + +     ++       +  
Sbjct: 560 EASAPTAVADMDDDRAADGDDNKAEVARDDDDAVSETADKSTETPSRDVEALDAAQQQAT 619

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFV 335
           +            + ++   +T         V
Sbjct: 620 ADAAAKLAELKPAKPDSFAGKTFLGASAAALV 651


>gi|298675091|ref|YP_003726841.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalobium evestigatum Z-7303]
 gi|298288079|gb|ADI74045.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalobium evestigatum Z-7303]
          Length = 996

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 143/739 (19%), Positives = 264/739 (35%), Gaps = 44/739 (5%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRL-------CDVSDILHIDPNNHIGDLLKRQ 140
            ++ +G +   +      +G    ++ G           D    L  +       + K Q
Sbjct: 283 KVNKNGNIVYANSAAENVLGLSKSEIEGRTYDNVKWKITDFKGNLFPETELPFELVQKYQ 342

Query: 141 NTWYGKT--TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
              Y       WP         + + A PI+  N  F        +       +      
Sbjct: 343 KPVYDVRHAIEWPN---GQRKLLSINAAPIFDDNGNFGSI--IATIEDITAYKEKEDTL- 396

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLK 255
                  +  E      ++      +    S          +  +      +    +   
Sbjct: 397 ---HLMKNTLESSINAIAISDLDGYLTYANSASLDMWEYNKEEILGKHITEFWQYKENAI 453

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLN--QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
              + L  +       +      N+                    +  ++      S   
Sbjct: 454 NVYHYLHENGSWKSEGKAKTKHGNVFDVYSLINLVNDESGKPVAIAGSFVDITKRKSYEE 513

Query: 314 YFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
              + E      +D  PI  FV   +GN    NP+   +  Y   + +     ++ +   
Sbjct: 514 KLKKSEQQLRNYIDNSPIGIFVIDKNGNYVDVNPAACHIIGYTKDELL----SMNIIDLH 569

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
           P  +   A +       +      SA L  I  N      +        ++        G
Sbjct: 570 PDNAHELAGQIFEELLENGK---VSAELPFITKNDSLRYWILDAVKLLEDK------YIG 620

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
              +  D +  + ++     +  ++ E  +D I   + +G I+  N    +  GY  E++
Sbjct: 621 FTTDITDRKRIEEELRESEERFRTLTEQAADAIIAHDFDGNIVYVNNLACENLGYSKEEL 680

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
           L                     E LS      +   T    K+       + + ++    
Sbjct: 681 LSMNIADISAYINSYDPKTVYWEKLSPSDSYLV--ETKLRRKDGSYYPAEVKLTRIDLKG 738

Query: 553 C--YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
                  + +I+  KQ +  L ++K  AE  S  KS+ LA VSHE+RTPLT+IIGFS+++
Sbjct: 739 RSVILGFVREITIRKQAEESLINSKLEAEAASQAKSELLANVSHELRTPLTSIIGFSDIL 798

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
              + G L N     Y + + RSG  +LD++ D+LD+SKIESGK  LH E VS+ + + +
Sbjct: 799 LKGKLGDL-NESQKTYLSKVHRSGKHLLDLITDILDLSKIESGKHELHCEKVSIPQLMKD 857

Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
               +  +A++K + I      +I  I AD   ++QI  N++ NA+ FT  G  + +   
Sbjct: 858 LKENIYPFASQKGLEINIDINRSIEYIYADKIKLRQILYNLVYNAVKFTEQGS-VTVKLD 916

Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
              N+ +   V DTG+G+   + ++    F Q+ +    R  GTGLGL L + +V+ + G
Sbjct: 917 WNDNDML-FSVIDTGIGIPADKQDEIFDSFKQLDSGASRRYSGTGLGLALVERLVEMHGG 975

Query: 791 KFYIFSTPAKGTLIEIIFP 809
           K ++ S   +G+    I P
Sbjct: 976 KIWVESEEREGSRFSFIIP 994



 Score =  122 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 68/538 (12%), Positives = 169/538 (31%), Gaps = 50/538 (9%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH--IDPNN--------------H 132
           +D+   + ++++      G  + +M+G+R  +    L+   +P+                
Sbjct: 141 VDSERRIFKVNKSAELFSGTTSDEMVGLRGGEALRCLNSLSNPDGCGFGQYCQECKVKNT 200

Query: 133 IGDLLKRQNTWYGKTTLWP--IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVD 190
           + D  +  N  Y   T  P  I+G   Y+   ++   I +  +     +    +      
Sbjct: 201 VIDTFETGNNHYNVETSLPFMIDGDVKYLTFLISTSLINNDEKP----KVIVSLLDITER 256

Query: 191 NDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK 250
              +    +    F  + E      +   +  +I    S   ++   +K       Y + 
Sbjct: 257 KKTQKNLNKEKDFFEKVAETSPVCITKVNKNGNIVYANSAAENVLGLSKSEIEGRTYDNV 316

Query: 251 DDVLKTEKYPLLTSEESSLPE-----------QEDFHTINLNQYTKKQYFGTLQNNSKES 299
              +   K  L    E                +      N  +         + +++   
Sbjct: 317 KWKITDFKGNLFPETELPFELVQKYQKPVYDVRHAIEWPNGQRKLLSINAAPIFDDNGNF 376

Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVD 358
              ++     +     ++  +L   T++       +    G L YAN + L + +Y   +
Sbjct: 377 GSIIATIEDITAYKEKEDTLHLMKNTLESSINAIAISDLDGYLTYANSASLDMWEYNKEE 436

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
            +         +        NAI        + +  +        +    N   +  +  
Sbjct: 437 ILGKH------ITEFWQYKENAINVYHYLHENGSWKS----EGKAKTKHGNVFDVYSLIN 486

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
              ++  + +   G   +    +  + K++    QL + ++ +  GI +I++ G  +  N
Sbjct: 487 LVNDESGKPVAIAGSFVDITKRKSYEEKLKKSEQQLRNYIDNSPIGIFVIDKNGNYVDVN 546

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
            A   + GY  +++L          N   +      E+L               TK + L
Sbjct: 547 PAACHIIGYTKDELLSMNIIDLHPDNAHELAGQIFEELLENGKVS---AELPFITKNDSL 603

Query: 539 LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
               +   KL     Y     DI++ K+ + +L  +++     +   +D  A ++H+ 
Sbjct: 604 RYWILDAVKLLEDK-YIGFTTDITDRKRIEEELRESEERFRTLTEQAAD--AIIAHDF 658



 Score = 78.5 bits (192), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 34/292 (11%), Positives = 85/292 (29%), Gaps = 22/292 (7%)

Query: 314 YFDEGENLTPETVDKCP-IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
              + ++      +  P +   V S   +F  N S  L +   S + + + GG +     
Sbjct: 119 SQRKTDDELKTIYENVPMVIMMVDSERRIFKVNKSAELFSGTTSDEMVGLRGGEALRCLN 178

Query: 373 PKLSDNN----------AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
              + +            +K  ++   +      +           +   +TF+      
Sbjct: 179 SLSNPDGCGFGQYCQECKVKNTVIDTFETGNNHYNVETSLPFMIDGDVKYLTFLISTSLI 238

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
              E         +  + +  ++ +  E      + E +   I  +N+ G I+  N A  
Sbjct: 239 NNDEKPKVIVSLLDITERKKTQKNLNKEKDFFEKVAETSPVCITKVNKNGNIVYANSAAE 298

Query: 483 KLFGYPVEDILRKPFTVF------LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
            + G    +I  + +          + N           +          +  +      
Sbjct: 299 NVLGLSKSEIEGRTYDNVKWKITDFKGNLFPETELPFELVQKYQKPVYDVRHAI-EWPNG 357

Query: 537 KLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
           +   L I    +   +        T+ DI+ +K++++ L   K   E   + 
Sbjct: 358 QRKLLSINAAPIFDDNGNFGSIIATIEDITAYKEKEDTLHLMKNTLESSINA 409



 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/126 (12%), Positives = 42/126 (33%), Gaps = 16/126 (12%)

Query: 460 ATSDGI----AIINREG-----IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
             ++G+     I N +G      I+  N A   + G   ++++ +     +     +   
Sbjct: 14  TMNEGVCFHEIIYNSDGYPVDYKIIDINPAYESIVGLKRDEVVGQ-LASNIYDTGEAPFL 72

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570
           H   ++     +   E       K  ++  +       P  S +     DI+  ++  ++
Sbjct: 73  HTYAKVAETGEQTCFETYFSLFGKHIRITVIS------PNKSKFITIFTDITSQRKTDDE 126

Query: 571 LSHAKK 576
           L    +
Sbjct: 127 LKTIYE 132


>gi|328545129|ref|YP_004305238.1| PAS domain protein [polymorphum gilvum SL003B-26A1]
 gi|326414871|gb|ADZ71934.1| PAS domain protein [Polymorphum gilvum SL003B-26A1]
          Length = 1231

 Score =  419 bits (1078), Expect = e-115,   Method: Composition-based stats.
 Identities = 195/791 (24%), Positives = 322/791 (40%), Gaps = 51/791 (6%)

Query: 45   CHDSFEQSNFTDQNQ----ESVSNTNYLDSENTFVFDPIPR---TVRFTWNIDAHGYLKE 97
              ++               E  ++      E   +F    R     R   + DA     E
Sbjct: 459  TAETPVVPPAAASPAGILAEVPASAEEAGDEAEDLFARAERQGEAARIGISGDAPLRPAE 518

Query: 98   ISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNL 157
            I   +        F     R+   +              L               EG++ 
Sbjct: 519  IEVAVKSLA--REFDAARQRVLTGATPHAPAEAEEERSALAETELPREAELPAEAEGSSA 576

Query: 158  YVPID-LAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSS 216
              P + + A       +   G                R +            ++    ++
Sbjct: 577  EAPCEDVEAAAEADETKTREG-------KPTETQPGLRPVEDLEPPAAVAQPDVPSDEAN 629

Query: 217  VEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFH 276
              + +    +                 T      +           ++       +    
Sbjct: 630  EAEAEGAARADAGKEGAAGEAAAEPGPTRGAPAAEGGRVIPFSGRPSTTVPVDTSRLSKP 689

Query: 277  TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY 336
                 +   +     L+ +  +            +         + P  +D+ PI   + 
Sbjct: 690  EREAFRKIAEALGARLEGDFGDEEPAAEAAPTAPVRPAPAPAAPIDPRLLDRLPIGIAIV 749

Query: 337  SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS------DNNAIKPVMLYRSD 390
                + YAN + L L  Y S++ +  AGGL  +   P         D+   + + +  + 
Sbjct: 750  RDREVLYANETLLALLGYGSIEALSEAGGLEAVFVEPDDHWPDTDGDDTLDETLKVRVAG 809

Query: 391  RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450
                   AR+H + WN    L ++    +   +            E  +     +  E  
Sbjct: 810  GGLRRVDARMHAVPWNGGRGLMISVTERQTPPEARP-------TSELGEREAALKAAEER 862

Query: 451  VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
            + ++ +ILE  +DG+ +++R G I+  N +   LFG    D++  P T +L   +     
Sbjct: 863  IAEMDTILETATDGVLVLDRHGTIVKANGSAEALFGASRADMIGAPLTAYLAPESHRSAT 922

Query: 511  HYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSC---YSLTMHDISEWK 565
             YL  +    +   L   +  +G      L+ L + I ++        +   + DI++WK
Sbjct: 923  DYLDGLARNGVASVLNDGREVIGQVASGGLIPLFMTIGRIGNGGEAMKFCAVLRDITQWK 982

Query: 566  QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
              + +L+ AK+ AE  SS KSDFLA++SHEIRTPL AIIGFSEV+  +RFG +GN RY E
Sbjct: 983  AAEEELTEAKRQAETASSQKSDFLAKISHEIRTPLNAIIGFSEVMMEERFGAIGNERYKE 1042

Query: 626  YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
            Y   I  SG  ++ +VNDLLD+SKIE+GK++L F  VS ++ V E ++L+Q  AN +R++
Sbjct: 1043 YLKDIRTSGAHIMSLVNDLLDLSKIEAGKLDLSFSAVSANDVVRECVALMQPQANRERVI 1102

Query: 686  IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
            IR S    +P ++AD RS++QI LN+LSNAI F  SGGQ+I+ST    N EV+LRVRDTG
Sbjct: 1103 IRASLPATVPSVVADPRSLRQIVLNLLSNAIKFNRSGGQVIVSTALEPNGEVVLRVRDTG 1162

Query: 746  VGMTNYELEKAMKPFGQIPNSQ-------QIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
             GM   +L  A++PF Q+  ++        +            KA+V+AN   F+I STP
Sbjct: 1163 TGMNAKDLAAALEPFRQVHTARIGGGTGLGLPLT---------KALVEANRAVFHIDSTP 1213

Query: 799  AKGTLIEIIFP 809
             +GTL+EI FP
Sbjct: 1214 EQGTLVEITFP 1224



 Score =  146 bits (368), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 58/328 (17%), Positives = 100/328 (30%), Gaps = 15/328 (4%)

Query: 72  NTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN 131
             FVF+   R VRF W +D       +S E    +G     ++G    +V+D   +DP  
Sbjct: 260 PRFVFEARGRPVRFAWKMDIDQRFTFLSPEFADVLGPATADIVGRTWSEVADRFGLDPRG 319

Query: 132 HIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN 191
            I   L+R++TW GKT  WP+    L VP+D+AALP + R R F G+RGFG+V V     
Sbjct: 320 SIARALQRRDTWSGKTVDWPVTDAALRVPVDMAALPAFDRRRVFEGYRGFGVVRVGEAFA 379

Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD 251
           D +A         +   + ++   +    +        P      +  + +  +      
Sbjct: 380 DAQAAVAARGAVQAADAKAEEAAQAEALAEPLAEPLAEPLAVSPAEKPIEAPAD------ 433

Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
             +         +E  +    E +               +      E           + 
Sbjct: 434 --IPAGPLAETPAETWAETWAETWAETTAETPVVPPAAASPAGILAEVPASAEEAGDEAE 491

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
             +           +              +  A  S            +  A        
Sbjct: 492 DLFARAERQGEAARIGISGDAPL--RPAEIEVAVKSLAREFDAARQRVLTGATP-----H 544

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASAR 399
           AP  ++                + A A 
Sbjct: 545 APAEAEEERSALAETELPREAELPAEAE 572


>gi|145299082|ref|YP_001141923.1| two-component system hybrid sensor histidine kinase/response
           regulator [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|142851854|gb|ABO90175.1| two-component system hybrid sensor histidine kinase/response
           regulator [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 1319

 Score =  419 bits (1077), Expect = e-115,   Method: Composition-based stats.
 Identities = 130/799 (16%), Positives = 250/799 (31%), Gaps = 107/799 (13%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN--TWYGKTT 148
             G    +++ L   +G  A +++GM    ++    +  +      +       +  +  
Sbjct: 160 PDGNWLRVNQRLCDMVGYQADELMGMSFQQITHPDDLFIDQTFVAQMLAGERPHYTLEKR 219

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                G    + I L    +     +   F    I+  N+   +  A  +R +       
Sbjct: 220 YLRKNGE--VLWITLTVALVRDDRGKPDYF--ISIIEDNQQRKETEAALRRNEVILHESQ 275

Query: 209 EIK----------KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
            +                   E Y I+ +    P          + +Y+  +      + 
Sbjct: 276 HLAKIGNWRWHIANNSHFWSPEIYRIYGRDPGLPPAVYPE----VKKYFTQEGWRAIAQS 331

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
                          +      +          L+++S    E        +     ++ 
Sbjct: 332 VERCLQNGQPYECDAEVIHEQGDPVWVIARGAALRDSSGAIVELYGTVQDITERKLAEQ- 390

Query: 319 ENLTPETVDKCPIPFFVYSHGNLFYAN--------------------PSFLLLTKYKSVD 358
                + +    +         L   N                     S   L   +   
Sbjct: 391 -----QLLHNQQVALDTQRRARLAALNLMDDAISARIRAETTSTALRDSEQRLLMAQEGA 445

Query: 359 DIEIAGG---LSTLLDAPK---------------------LSDNNAIKPVMLYRSDRTCI 394
            + I         L  +P+                     L  ++  +   L        
Sbjct: 446 HVGIWEWDILSGRLFFSPECARLYGRSVEQLCEFHIWQGCLHPDDRARIDQLLSELPHTG 505

Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
                   I         +        +     +   GI  +  + +  ++++     QL
Sbjct: 506 TPLDIEFRILRPTGEVRWLVSKGSVYRDAQQRPVRLLGINLDITERKQAEQQLR----QL 561

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
              L+ + DG+ I + +G I   N A     GY   +++ +  T+     TP      L 
Sbjct: 562 SLALKQSPDGVFITDIQGRIEYVNVAFLAASGYQQHEVIGQTPTLLRSGLTPKATYITLW 621

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNK 570
           + +    R       +   K+     +   +  +   +     Y     DI+E KQ   +
Sbjct: 622 DAIHQGQRW--HGEFINRRKDGSHYQVLATVSPIRQENGEVTHYVTVQADITEKKQLGEE 679

Query: 571 LSHAK------------------KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
           L   +                  + AE  +  KS FLA +SHEIRTP+ AI+G + ++K 
Sbjct: 680 LDQYRYHLEEMVNERTLQLAQAHQRAESANRAKSAFLANMSHEIRTPMNAILGLTYLLKR 739

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
                  + R       ID +   +L I+ D+LD+SKI++GKM L     SL   +    
Sbjct: 740 DTPDHTQHDR----LEKIDNAAQHLLTIITDILDLSKIDAGKMVLEQGDFSLTAMLDNVS 795

Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
           +L+   A  K + I     ++   +  D+  ++Q  LN  +NAI FT  G  + +     
Sbjct: 796 ALMSEQARAKGLTIIVDIGDSPAWVHGDITRLRQALLNYAANAIKFTEQGS-VTLRVRVE 854

Query: 733 S---NEEV-ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
               N  +    V DTG+G++  + EK  + F Q   S   +  GTGLGL +   +    
Sbjct: 855 RPLSNGYLLRFEVEDTGIGISPEQREKLFQAFEQADASTTRKYGGTGLGLAITSRLATLM 914

Query: 789 MGKFYIFSTPAKGTLIEII 807
            G+  + ST  KG+     
Sbjct: 915 GGEVGVESTQGKGSCFWFT 933



 Score = 86.2 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 17/150 (11%), Positives = 56/150 (37%), Gaps = 5/150 (3%)

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
           +    + +++    +  +  E  + GIA++  +G  L  N+ +  + GY  ++++   F 
Sbjct: 129 ELMSTQSRLQRSETRFQATFEQAAVGIALVAPDGNWLRVNQRLCDMVGYQADELMGMSFQ 188

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----Y 554
                +   +   ++ ++L+ +             K  ++L + + +  +         +
Sbjct: 189 QITHPDDLFIDQTFVAQMLAGERPH-YTLEKRYLRKNGEVLWITLTVALVRDDRGKPDYF 247

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
              + D  + K+ +  L   + I  +    
Sbjct: 248 ISIIEDNQQRKETEAALRRNEVILHESQHL 277



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/256 (15%), Positives = 82/256 (32%), Gaps = 14/256 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWY 144
            +  D  G ++ ++       G    ++IG     +   L        + D + +   W+
Sbjct: 572 VFITDIQGRIEYVNVAFLAASGYQQHEVIGQTPTLLRSGLTPKATYITLWDAIHQGQRWH 631

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
           G+      +G++  V   ++  PI   N E + +     V V     + + LG+ LD+  
Sbjct: 632 GEFINRRKDGSHYQVLATVS--PIRQENGEVTHY-----VTVQADITEKKQLGEELDQYR 684

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
            HL E+       E+      + Q      R K+   +   +              LL  
Sbjct: 685 YHLEEMVN-----ERTLQLAQAHQRAESANRAKSAFLANMSHEIRTPMNAILGLTYLLKR 739

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNS-KESFEYLSHRNHPSLSAYFDEGENLTP 323
           +     + +    I+            + + S  ++ + +  +   SL+A  D    L  
Sbjct: 740 DTPDHTQHDRLEKIDNAAQHLLTIITDILDLSKIDAGKMVLEQGDFSLTAMLDNVSALMS 799

Query: 324 ETVDKCPIPFFVYSHG 339
           E      +   V    
Sbjct: 800 EQARAKGLTIIVDIGD 815


>gi|241763479|ref|ZP_04761532.1| multi-sensor hybrid histidine kinase [Acidovorax delafieldii 2AN]
 gi|241367320|gb|EER61651.1| multi-sensor hybrid histidine kinase [Acidovorax delafieldii 2AN]
          Length = 1618

 Score =  419 bits (1076), Expect = e-114,   Method: Composition-based stats.
 Identities = 136/751 (18%), Positives = 264/751 (35%), Gaps = 39/751 (5%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147
             DA G +  ++ +  +  G    ++ G +   VS           +   L    +W G+ 
Sbjct: 366  TDADGLIDWVNPQYERNTGYPLKEVRGKKPSLVSSGQTPQRTYQQMWSTLLSGQSWQGQF 425

Query: 148  TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                 +G+  Y    L+  P++ +  +  G    G+          +   +R ++  + L
Sbjct: 426  VNQRRDGSIYYDEATLS--PVFDKAGKRIGM--VGLHEDVTERMRAQKELQRRERLLNEL 481

Query: 208  HEIKKGHSSVEKE-----KYDIFSQQSPPPHLR---MKNKVSSLTEYYAHKDDVLKTEKY 259
             E +                 I         L        +        +     +    
Sbjct: 482  LEQQTAIFDNAPPILLVCDGRIRQFNPAFVELMRGTATELLGRDIAVLFNGASSSERFTA 541

Query: 260  PLLT--SEESSLPEQEDFHTINLNQYTKKQYFGTLQNN---SKESFEYLSHRNHPSLSAY 314
             +    ++  +L E+     ++ + Y  +     L+     +   +              
Sbjct: 542  RVAPRLAQGQALREEATLCRLDGSSYAARLAGRGLKMEGCLTASIWVIEDITEARQAEVA 601

Query: 315  FDEGENLTPETVDKCPIPFFVY--SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
              E         +   +  F      G +   +   + +      D           L  
Sbjct: 602  MREAAERLEIAQEAGKVGVFDVNLESGRVL-WSDKLVAMMGLPPGDQPRGKDAWLACLHP 660

Query: 373  PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
                         L     T   A A    I                  N   + +   G
Sbjct: 661  DDRDRARTHFDECLA---GTATTARA-SWRIVRPGGEVRWFLEAARIFRNADGKAVRVVG 716

Query: 433  IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
            +  +  D +  + ++  ++    ++++A    +   + +G  +  N A  + FG   ED+
Sbjct: 717  VYVDIHDQKQLEAQVAEQLDFQQALIDAIPVPLFYKDAQGRYIGFNAAYEQAFGVRREDL 776

Query: 493  LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE----KLLSLRIIIKKL 548
            + K                      ++   Q + +       +      L  L    +  
Sbjct: 777  IGKTVLDLQFLAQAERERFDSDTGAAVAGEQAVHREVDLPYADGAMHHTLFWLHGFSRAD 836

Query: 549  PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                    T  DI++ ++ +  L  AK++AE+ ++ KS+FLA +SHEIRTP+ AIIG S 
Sbjct: 837  GSPGGAIGTFVDITDRQKAEQDLRLAKELAEETTALKSNFLANMSHEIRTPMNAIIGMSH 896

Query: 609  VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
            +          NPR  +Y + I ++G  +L ++ND+LD SKIE+GK+ +   P  LD  +
Sbjct: 897  LALKSGL----NPRQHDYVSKIQQAGQHLLGVINDILDFSKIEAGKLTVEKHPFVLDRML 952

Query: 669  SEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIII 727
                 +V   A  K + +    A ++P  ++ D   + QI +N  +NAI FT  G +I I
Sbjct: 953  EGVADVVGYKAGAKGLELVCDVAADVPPNLVGDSLRLGQILINFSNNAIKFTERG-EISI 1011

Query: 728  STTHTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
            +      +     +   VRDTG+G+T  ++ +  + F Q   S   R  GTGLGL + K+
Sbjct: 1012 AVRVQEQDAQRVRLRFEVRDTGIGLTPEQMGRLFESFQQADASTTRRYGGTGLGLAICKS 1071

Query: 784  MVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
            + +   G+  + S   KG+   +  PL   +
Sbjct: 1072 LAELMGGEVGVDSEYGKGSTFWVSLPLERGA 1102



 Score = 99.3 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 44/407 (10%), Positives = 101/407 (24%), Gaps = 27/407 (6%)

Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA 248
               P  +            +  +    +           S  P      +V      YA
Sbjct: 225 ASTRPEWMFAMAPPLTQARIDAVRASRQMGHHFD--NGVASALPFSPDAGEVVIDGTTYA 282

Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
                L  +           L   +D   +       +         S      L     
Sbjct: 283 VGQRSLDWKD----PGGAWQLLVLDDTSALMSPGTRLQVGGVAFVVLSLLGLLVLDLLLS 338

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSVDDIEIAGGLS 367
               A   E  ++    ++  P+   +     L  + NP +   T Y     ++   G  
Sbjct: 339 RRRVAAARERFHVLGAALESSPVAVVITDADGLIDWVNPQYERNTGYP----LKEVRGKK 394

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
             L +   +     + +                        +            ++  + 
Sbjct: 395 PSLVSSGQTPQRTYQQMWSTLLSGQSWQGQFVNQR---RDGSIYYDEATLSPVFDKAGKR 451

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLC-------SILEATSDGIAIINREGIILSTNRA 480
           +   G+  +  +    +++++     L        +I +     + + +  G I   N A
Sbjct: 452 IGMVGLHEDVTERMRAQKELQRRERLLNELLEQQTAIFDNAPPILLVCD--GRIRQFNPA 509

Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
             +L      ++L +   V     + S           L   Q L +       +    +
Sbjct: 510 FVELMRGTATELLGRDIAVLFNGASSSERFTA-RVAPRLAQGQALREEATLCRLDGSSYA 568

Query: 541 LRIIIKKLPFSSCY---SLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
            R+  + L    C       + DI+E +Q +  +  A +  E     
Sbjct: 569 ARLAGRGLKMEGCLTASIWVIEDITEARQAEVAMREAAERLEIAQEA 615



 Score = 76.2 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/435 (9%), Positives = 111/435 (25%), Gaps = 31/435 (7%)

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT-- 244
                   A   +       +  +      ++     + +        R+          
Sbjct: 60  LDQAAQAVAGQVQGGGLLGAVSLLGLSEPLLKDMARGLLAPDDSAALERLAVARGRFLIQ 119

Query: 245 -EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303
             Y    D  +   + P   S   +L  +  F        T     G+        +   
Sbjct: 120 GVYVMAADGTVVAHETPGQKSTGINLAFRPYFQQAMRGAATVYAAIGSNTKERGLYYAAP 179

Query: 304 SHRNHPSL-----SAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSV- 357
            + +         +  F  G       + +  +P  + S   + +A+     +       
Sbjct: 180 LYESETPSSTIIGAVMFKVGFQSVDVQLARVGLPTLLLSPQGVAFASTRPEWMFAMAPPL 239

Query: 358 -----DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
                D +  +  +    D    S             D T  A   R    +        
Sbjct: 240 TQARIDAVRASRQMGHHFDNGVASALPFSPDAGEVVIDGTTYAVGQRSLDWKDPGGAWQL 299

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ-----------LCSILEAT 461
           +              +   G+    +          +   +           L + LE++
Sbjct: 300 LVLDDTSALMSPGTRLQVGGVAFVVLSLLGLLVLDLLLSRRRVAAARERFHVLGAALESS 359

Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
              + I + +G+I   N    +  GYP++++  K  ++     TP      +   L    
Sbjct: 360 PVAVVITDADGLIDWVNPQYERNTGYPLKEVRGKKPSLVSSGQTPQRTYQQMWSTLLSG- 418

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKI 577
            Q+ +   +   ++  +      +  +   +           D++E  + + +L   +++
Sbjct: 419 -QSWQGQFVNQRRDGSIYYDEATLSPVFDKAGKRIGMVGLHEDVTERMRAQKELQRRERL 477

Query: 578 AEKESSHKSDFLARV 592
             +    ++      
Sbjct: 478 LNELLEQQTAIFDNA 492


>gi|117618541|ref|YP_856712.1| PAS [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|117559948|gb|ABK36896.1| PAS [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 1323

 Score =  418 bits (1075), Expect = e-114,   Method: Composition-based stats.
 Identities = 127/799 (15%), Positives = 249/799 (31%), Gaps = 103/799 (12%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI--DPNNHIGDLLKRQNTWYGK 146
           +   G    ++  L   +G  A +++GM    ++    +  D       L   +  +  +
Sbjct: 158 VSPDGKWLRVNRRLCDMLGYQADELMGMTFQQITHPDDLFIDQTYVAQMLADERQHYTLE 217

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                  G    + I L    +     +   F    ++  ++   +     +R +     
Sbjct: 218 KRYLRKGGE--VLWITLTVALVKDLKGKPDYF--ISVIEDHQQRKETEEALRRNEGILRE 273

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH--------KDDVLKTEK 258
              + K  +       D       P   R+  +  SL                     + 
Sbjct: 274 SQHLAKIGNWRWNITDDSHFWS--PEIYRIYGRDPSLPPAIYPEVRKYFTQDGWRAIAQS 331

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
                 +        +                 L+ N     E        +     ++ 
Sbjct: 332 VERCLQDGLPYECDAEVIHEQGEPIWIIARGAALRANDGTIVELYGTVQDITERKLAEQQ 391

Query: 319 ENLTPETV-------------------------------------------DKCPIPFFV 335
                +                                             +   +  + 
Sbjct: 392 LLHNQQLALDTQRRARLAALNLMDDAISARIRAETTSSALRESEQRLLMAQEGAHVGIWE 451

Query: 336 YSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394
           ++  G   + +P    L    +    E     S L    K   +  +  +    +    I
Sbjct: 452 WNMQGGRLFFSPECARLYGRSAEQLSEFKQWHSCLHPDDKPRLDKLLAELP---ASGKPI 508

Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
                   I     +   ++       +     +   GI  +  + +  ++++     QL
Sbjct: 509 EIE---FRILLPNGDVRWLSSKGSIYRDAQQRPLRLLGIHLDITERKQAEQQLR----QL 561

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
              LE + DG+ I + +  I   N A     GY   +++ +  ++     TP      L 
Sbjct: 562 SLALEQSPDGVFITDTQARIEYVNVAFLAASGYQQSEVIGQTPSLLRSGLTPKATYIALW 621

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNK 570
           + +    R       +   K+     +   +  +   +     Y     DI+E KQ   +
Sbjct: 622 DAIKRGQRW--HGEFINRRKDGSHYQVLATVSPIRQENGAVTHYVTVQADITEKKQLGEE 679

Query: 571 LSHAK------------------KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
           L   +                  + AE  +  KS FLA +SHEIRTP+ AI+G + ++K 
Sbjct: 680 LDQYRYHLEEMVNERTLQLAQAHQRAESANRAKSAFLANMSHEIRTPMNAILGLTYLLKR 739

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
                  +    +    ID +   +L I+ND+LD+SKI++GKM L     SL   +    
Sbjct: 740 D----TPDHTQQDRLEKIDNAAQHLLTIINDILDLSKIDAGKMALEQSDFSLTAMLDNVS 795

Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
           +L+   A  K + I     +    +  D+  ++Q  LN  +NAI FT  G  + +     
Sbjct: 796 ALMSEQARAKGLTIIVDIGDTPAWVHGDITRLRQALLNYAANAIKFTEQGS-VTLRVRVD 854

Query: 733 ---SNEEV-ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
              +   +    V DTG+G++  + EK  + F Q   S   +  GTGLGL +   +    
Sbjct: 855 HPLAGGYLLRFEVEDTGIGISPEQSEKLFQAFEQADVSTTRKYGGTGLGLAITSRLATLM 914

Query: 789 MGKFYIFSTPAKGTLIEII 807
            G+  + ST  KG+     
Sbjct: 915 GGEVGVTSTLGKGSCFWFT 933



 Score = 86.2 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/196 (12%), Positives = 65/196 (33%), Gaps = 10/196 (5%)

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK-----RKMEIEVM 452
           A LH ++      L    I                        R  +      +++    
Sbjct: 83  APLHELRIGAGQDLVQWGILIANGVLISLLSAAMHRSRARETQRWQELSSIQSRLQQSET 142

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
           +  +  E  + GIA+++ +G  L  NR +  + GY  ++++   F      +   +   Y
Sbjct: 143 RFQATFEQAAVGIALVSPDGKWLRVNRRLCDMLGYQADELMGMTFQQITHPDDLFIDQTY 202

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEK 568
           + ++L+ + +           K  ++L + + +  +         +   + D  + K+ +
Sbjct: 203 VAQMLADERQH-YTLEKRYLRKGGEVLWITLTVALVKDLKGKPDYFISVIEDHQQRKETE 261

Query: 569 NKLSHAKKIAEKESSH 584
             L   + I  +    
Sbjct: 262 EALRRNEGILRESQHL 277



 Score = 77.4 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 31/300 (10%), Positives = 84/300 (28%), Gaps = 16/300 (5%)

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKS 356
            + E    +   S+ +   + E     T ++  +    V   G     N     +  Y++
Sbjct: 120 RARETQRWQELSSIQSRLQQSETRFQATFEQAAVGIALVSPDGKWLRVNRRLCDMLGYQA 179

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
            + +   G     +  P     +      +   +R       R           L +T  
Sbjct: 180 DELM---GMTFQQITHPDDLFIDQTYVAQMLADERQHYTLEKR---YLRKGGEVLWITLT 233

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476
                +   +      +  +    +  +  +      L         G    N       
Sbjct: 234 VALVKDLKGKPDYFISVIEDHQQRKETEEALRRNEGILRESQHLAKIGNWRWNITDDSHF 293

Query: 477 TNRAVSKLFGYPV--EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
            +  + +++G        +      +  Q+    +   +   L   L    +   +   +
Sbjct: 294 WSPEIYRIYGRDPSLPPAIYPEVRKYFTQDGWRAIAQSVERCLQDGLPYECDAEVI--HE 351

Query: 535 EEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
           + + + +      L  +    +    T+ DI+E K  + +L H +++A      ++   A
Sbjct: 352 QGEPIWIIARGAALRANDGTIVELYGTVQDITERKLAEQQLLHNQQLALDTQR-RARLAA 410



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/257 (15%), Positives = 82/257 (31%), Gaps = 14/257 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWY 144
            +  D    ++ ++       G    ++IG     +   L        + D +KR   W+
Sbjct: 572 VFITDTQARIEYVNVAFLAASGYQQSEVIGQTPSLLRSGLTPKATYIALWDAIKRGQRWH 631

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
           G+      +G++  V   ++  PI   N   + +     V V     + + LG+ LD+  
Sbjct: 632 GEFINRRKDGSHYQVLATVS--PIRQENGAVTHY-----VTVQADITEKKQLGEELDQYR 684

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
            HL E+       E+      + Q      R K+   +   +              LL  
Sbjct: 685 YHLEEMVN-----ERTLQLAQAHQRAESANRAKSAFLANMSHEIRTPMNAILGLTYLLKR 739

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNS-KESFEYLSHRNHPSLSAYFDEGENLTP 323
           +     +Q+    I+            + + S  ++ +    ++  SL+A  D    L  
Sbjct: 740 DTPDHTQQDRLEKIDNAAQHLLTIINDILDLSKIDAGKMALEQSDFSLTAMLDNVSALMS 799

Query: 324 ETVDKCPIPFFVYSHGN 340
           E      +   V     
Sbjct: 800 EQARAKGLTIIVDIGDT 816



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/301 (9%), Positives = 79/301 (26%), Gaps = 16/301 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIG-MRLCDVSDILH-IDPNNHIGDLLKRQNTW 143
            W  +  G     S E  +  G  A ++    +             +  + +L       
Sbjct: 449 IWEWNMQGGRLFFSPECARLYGRSAEQLSEFKQWHSCLHPDDKPRLDKLLAELPASGKPI 508

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +  +    G   ++    +   IY   ++    R  GI              ++L   
Sbjct: 509 EIEFRILLPNGDVRWLS---SKGSIYRDAQQRP-LRLLGIHLDITERKQAEQQLRQLSLA 564

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
                +      +  + +Y   +  +   + +  ++V   T          K     L  
Sbjct: 565 LEQSPDGVFITDTQARIEYVNVAFLAASGYQQ--SEVIGQTPSLLRSGLTPKATYIALWD 622

Query: 264 SEESSLPEQEDF--HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
           + +       +F     + + Y        ++  +     Y++ +   +      E  + 
Sbjct: 623 AIKRGQRWHGEFINRRKDGSHYQVLATVSPIRQENGAVTHYVTVQADITEKKQLGEELDQ 682

Query: 322 TPETVD------KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
               ++         +        +   A  +FL    ++    +    GL+ LL     
Sbjct: 683 YRYHLEEMVNERTLQLAQAHQRAESANRAKSAFLANMSHEIRTPMNAILGLTYLLKRDTP 742

Query: 376 S 376
            
Sbjct: 743 D 743


>gi|108804107|ref|YP_644044.1| multi-sensor hybrid histidine kinase [Rubrobacter xylanophilus DSM
           9941]
 gi|108765350|gb|ABG04232.1| multi-sensor hybrid histidine kinase [Rubrobacter xylanophilus DSM
           9941]
          Length = 1069

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 120/526 (22%), Positives = 219/526 (41%), Gaps = 32/526 (6%)

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEI 362
             R    L       E       +      F     G L  ANP+   +  Y+S +++  
Sbjct: 44  GVRALGRLERGRAAAEEGYRSVFENASEGIFRSTPEGRLLAANPAMARMFGYRSPEEL-- 101

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
              +S L      S     + V     + +     AR+   +    + L  +        
Sbjct: 102 VSEVSDLGRQLWESPQERERFVRRVLEEGSVSGFEARM---RRRDGSLLWASLNGHRVTG 158

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
           +    +   G   +    R  +  +E    Q   + E + D + + + EG I+  N    
Sbjct: 159 RDGRLVCLEGTILDITWRRRQQEALEESQRQFRDLFERSVDALLVHDGEGNIVDCNAEAC 218

Query: 483 KLFGYPVEDILRKPFT----VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG--STKEE 536
           +  GY  +++LR          L +   +     L E         +  + LG    ++ 
Sbjct: 219 RSLGYTRQELLRMNVRDFATNLLRREDRTPGEPTLWERALSGEPGVVAGVHLGEHRRRDG 278

Query: 537 KLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
               + + +  + +           DI+E K+ + +L  AK+ AE  S  KS+F+A +SH
Sbjct: 279 TTFPVEVRVGPVVYGGRRMILAAARDITERKRIEEELREAKEQAEAASRAKSEFVANMSH 338

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           EIRTP+  +IG +E++ +    P       EYA  I  SG  +L I+ND+LD SKIE+G+
Sbjct: 339 EIRTPMNGVIGMAELLLDTPLTP----EQREYARTIRSSGEALLAILNDILDFSKIEAGR 394

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILS 713
           ++L   P  + + V E +SL+   A+ K + +       +P  I  D   ++Q+  N++ 
Sbjct: 395 LSLERIPFEIHKEVEEVVSLLAPRAHAKGLELICFIEPGVPPLIKGDPFRLRQVLTNLIG 454

Query: 714 NAIHFTPSGGQIIISTTHTSNE------------EVILRVRDTGVGMTNYELEKAMKPFG 761
           NAI FT  G ++++S + +  E            E+   V+D+G+G+   + +   + F 
Sbjct: 455 NAIKFTEEG-EVVVSVSLSKEEKSAPAGERGGEIELRFEVKDSGIGIQEEQQKHLFEAFS 513

Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           Q   S   R  GTGLGL +++ +V+   G+  + S+P +G+     
Sbjct: 514 QADASTTRRYGGTGLGLAISRQLVEMMGGEIGLKSSPKEGSTFHFS 559



 Score = 73.5 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/352 (11%), Positives = 95/352 (26%), Gaps = 13/352 (3%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH---IGDLLKRQNT 142
            +     G L   +  + +  G  + + +   + D+   L   P      +  +L+  + 
Sbjct: 73  IFRSTPEGRLLAANPAMARMFGYRSPEELVSEVSDLGRQLWESPQERERFVRRVLEEGSV 132

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRG--FGIVHVNRVDNDPRALGKRL 200
              +  +   +G+   +   L    +  R+       G    I    R         ++ 
Sbjct: 133 SGFEARMRRRDGSL--LWASLNGHRVTGRDGRLVCLEGTILDITWRRRQQEALEESQRQF 190

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
              F    +    H                  + R +    ++ ++  +           
Sbjct: 191 RDLFERSVDALLVHDGEGNIVDCNAEACRSLGYTRQELLRMNVRDFATNLLRREDRTPGE 250

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
               E +   E      ++L ++ ++               Y   R   + +    E + 
Sbjct: 251 PTLWERALSGEPGVVAGVHLGEHRRRDGTTFPVEVRVGPVVYGGRRMILAAARDITERKR 310

Query: 321 LTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
           +  E  +            + F AN S  + T       +    G++ LL    L+    
Sbjct: 311 IEEELREAKEQAEAASRAKSEFVANMSHEIRTP------MNGVIGMAELLLDTPLTPEQR 364

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
                +  S    +A    +          L++  IPFE   +  E +    
Sbjct: 365 EYARTIRSSGEALLAILNDILDFSKIEAGRLSLERIPFEIHKEVEEVVSLLA 416


>gi|294494798|ref|YP_003541291.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
 gi|292665797|gb|ADE35646.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
          Length = 599

 Score =  417 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 130/552 (23%), Positives = 230/552 (41%), Gaps = 16/552 (2%)

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
           E++LP   D +   +      +     +         L       +       E    E 
Sbjct: 48  ETTLPFSVDGNEKEMTLLVSTELLSIEEEEPHVLVSILDITERKDMEKELKISEKRFREI 107

Query: 326 VDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
             + PIP  +Y   G+L  AN S L L     V +++       L D P L  +   + +
Sbjct: 108 YSESPIPIEIYDSEGHLANANTSCLKLFGISDVAEVKDFN----LFDDPNLPADTRAQLL 163

Query: 385 MLYRSD-RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
                +  T            +    S ++       A              +    +  
Sbjct: 164 AGQTVEYETVFDFELVKKLDLYKTNRSGSIHVNVKISALCTDCIDGYLVHVQDITKRKQA 223

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR--KPFTVFL 501
           + K+     +L   L+ T  GI   + +      +   +++ GY  +++    + +    
Sbjct: 224 EEKVRQSEERLELALKGTRAGIWDWDVQTGKTYFDERWAEIVGYNPDELKPDIQTWIDLT 283

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR-----IIIKKLPFSSCYSL 556
                      L +  +    +  E       K    + +      +   +       + 
Sbjct: 284 HPKDYKRAEELLNKHFA-GETENYECQLRMKHKNGHWVWIEDRGRVVEWSRDGKPKRMTG 342

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
           T  DI++ K  +N +  +K +AE+ +  KS+FLA +SHE+RTPL +IIG+S+++     G
Sbjct: 343 THIDITDRKMAENAIIQSKVLAEQANRTKSEFLANMSHELRTPLNSIIGYSQILNQNPSG 402

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
            L + + ++Y++ I  SG  +L+++N +LDISK+E+GKM    E V+L E + + I LV+
Sbjct: 403 NL-DEKELKYSHNILNSGEHLLELINSILDISKVEAGKMEYEPERVNLPETIDDIIGLVK 461

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
             A +K I IR    + I ++  D    KQI  N+LSNAI FTP  G++ I  + T +  
Sbjct: 462 PLAMKKSIDIRFINNSAIAKVWVDRVKFKQILHNLLSNAIKFTPEKGEVKIYLS-TDDGT 520

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
             + V DTG+G+   ++E    PF Q+ +S     EGTGLGL L K  V+ + G+ ++ S
Sbjct: 521 AQISVADTGIGIPAEKIEDIFDPFKQVNSSSSREYEGTGLGLALVKKYVEMHDGEIWVES 580

Query: 797 TPAKGTLIEIIF 808
               G+      
Sbjct: 581 EVGAGSTFTFTL 592


>gi|186684843|ref|YP_001868039.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC
           73102]
 gi|186467295|gb|ACC83096.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC
           73102]
          Length = 1123

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 115/777 (14%), Positives = 247/777 (31%), Gaps = 82/777 (10%)

Query: 86  TWNIDAHG-YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQNTW 143
            W     G   +  S       G    +       D            +    +   + +
Sbjct: 151 VWVSTPQGICFELAS--WIAYTGQSLAEAQNGGWIDAVHPDDRAYTGEVWSAAVANLSMY 208

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +  +   +G   Y  +     P+   +         G            A  +RL ++
Sbjct: 209 QIEYRIRGKDGNYRYFWVW--GAPVIEEDGSVR--EWIGTCTDIHKRKLAEAENQRLQER 264

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQ-----SPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
           +  L             +    S +     +       + +V    +     D    TE 
Sbjct: 265 YRSLVTATSQIVWAATPEGLGISNEMLTWMAYTGQSEAEVEVWGWLDPIHPDDCARSTEV 324

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
           +    +       +      +            +        E++            +  
Sbjct: 325 WNAAMTNRGIYQTEYRLRGKDGTYRYFSVCGAPVLEEDGSIREWIGTCTDIHDRKLAEAE 384

Query: 319 ENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
                + ++       V      + + N     L  +   +              PK  +
Sbjct: 385 NQRLLDMLNHSSDAIIVRDMSDKISHWNQGAERLYGWTREEVKGQCIQAFLKKTFPKPKE 444

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
               + +     +      +             + +      + +   +      I  + 
Sbjct: 445 EIIAELLEQGNWEGEVQHLTHF--------GKLITVQSRWTLQRDISGQPCAVLEINTDI 496

Query: 438 VDTRINKRKMEIEVMQLCS---------------------ILEATSDGIAIINREGIILS 476
              +  +  +     +L +                     IL+  +DG+ + +  G I  
Sbjct: 497 TARKQAEIALRQLNQELEARVVERTAALQNTLAEAQGLNAILDNLADGLLVADTAGQITH 556

Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
            N A   ++G     +          +   S +   +    S        ++ L   +  
Sbjct: 557 FNPAFLTMYGLTATALKGH-----YRELPISGLAELVARTQSHPEEVFSAEVALTKERIG 611

Query: 537 KLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
           + ++  I  K +          +L + DI+  K+                  K+DF++ V
Sbjct: 612 QAVATAIFKKTVEQEPLACFGSALLIRDITAEKEI--------------DKMKTDFISTV 657

Query: 593 SHEIRTPLTAIIGFS----EVIKNQRFGPLGNP---------RYIEYANYIDRSGNLVLD 639
           SHE+RTPLT+++GF+    E ++   F  +            R  +  N I      +  
Sbjct: 658 SHELRTPLTSVLGFASIIKEKLETDVFPIISTEDRKLQKTIKRVADNLNIIVSEAERLTS 717

Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA 699
           ++ND+LDI+K+E+GK+    +P+   E +  A +          + + +     +P+I+ 
Sbjct: 718 LINDVLDIAKMEAGKVEWQMQPLDPSELLDWATNSTAGLFETNGLQLVSEIEPGLPQIVG 777

Query: 700 DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKP 759
           D   + Q+ +N++SNA+ FT SG  +        +  V + V DTG+G+   +  K  + 
Sbjct: 778 DRNRLLQVLINLISNAVKFTESG-CVTCRVKQGHDG-VCISVIDTGIGIAPEDQPKVFEK 835

Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           F Q+ ++   + +GTGLGLP+ K ++D + G+ ++ S P KG++   I P Y  S P
Sbjct: 836 FRQVGDTLTDKPKGTGLGLPICKQIIDHHGGRIWVESEPGKGSVFSFIIPTY-ASDP 891



 Score =  149 bits (375), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 70/538 (13%), Positives = 154/538 (28%), Gaps = 35/538 (6%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK-RQNTWYGKTTLW 150
            G L  I+      +G    + + +    ++   +   +    + L+        +  L 
Sbjct: 26  DGTLININPAYAAILGRTVPETLNLNYWQITPENYAIADQATLENLEQTGRYGPYEKELI 85

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNR----VDNDPRALGKRLDKKFSH 206
             EG    VP+ ++ L I  ++ E   +     +   R           + K+ + ++  
Sbjct: 86  HKEGHL--VPVRISGLMI-EKDGEQLIWSSVEDISDLRSFQQERQHTEQILKQSEARYRS 142

Query: 207 LHEIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSSLTEYYAHKDDVLKTEK-YPLLT 263
           L         V   +   F   S        +    +       H DD   T + +    
Sbjct: 143 LVTANTQIVWVSTPQGICFELASWIAYTGQSLAEAQNGGWIDAVHPDDRAYTGEVWSAAV 202

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
           +  S    +      + N      +   +        E++            +       
Sbjct: 203 ANLSMYQIEYRIRGKDGNYRYFWVWGAPVIEEDGSVREWIGTCTDIHKRKLAEAENQRLQ 262

Query: 324 ETVDKCPIP----FFVYSHGNLFYANPSFLLL-TKYKSVDDIEIAGGLSTLLDAPKLSDN 378
           E             +  +   L  +N     +    +S  ++E+ G L  +         
Sbjct: 263 ERYRSLVTATSQIVWAATPEGLGISNEMLTWMAYTGQSEAEVEVWGWLDPIHPDDCARST 322

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
                 M  R            + ++         +        +        G   +  
Sbjct: 323 EVWNAAMTNRG------IYQTEYRLRGKDGTYRYFSVCGAPVLEEDGSIREWIGTCTDIH 376

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
           D ++     E E  +L  +L  +SD I + +    I   N+   +L+G+  E++  +   
Sbjct: 377 DRKLA----EAENQRLLDMLNHSSDAIIVRDMSDKISHWNQGAERLYGWTREEVKGQCIQ 432

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----Y 554
            FL++  P      + E+L        E      T   KL++++         S      
Sbjct: 433 AFLKKTFPKPKEEIIAELLEQGN---WEGEVQHLTHFGKLITVQSRWTLQRDISGQPCAV 489

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII-GFSEVIK 611
                DI+  KQ +  L    +  E     ++  L     E +  L AI+   ++ + 
Sbjct: 490 LEINTDITARKQAEIALRQLNQELEARVVERTAALQNTLAEAQG-LNAILDNLADGLL 546



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 51/130 (39%), Gaps = 4/130 (3%)

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
            + E    G+ +   +G +++ N A + + G  V + L   +     +N        L  
Sbjct: 11  QLFELCPVGLVLCRTDGTLININPAYAAILGRTVPETLNLNYWQITPENYAIADQATLEN 70

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL--TMHDISEWKQEKNKLSH 573
           +         EK  +   KE  L+ +RI    +       +  ++ DIS+ +  + +  H
Sbjct: 71  LEQTGRYGPYEKELI--HKEGHLVPVRISGLMIEKDGEQLIWSSVEDISDLRSFQQERQH 128

Query: 574 AKKIAEKESS 583
            ++I ++  +
Sbjct: 129 TEQILKQSEA 138


>gi|117921856|ref|YP_871048.1| multi-sensor hybrid histidine kinase [Shewanella sp. ANA-3]
 gi|117614188|gb|ABK49642.1| multi-sensor hybrid histidine kinase [Shewanella sp. ANA-3]
          Length = 1767

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 126/781 (16%), Positives = 263/781 (33%), Gaps = 51/781 (6%)

Query: 59   QESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRL 118
               V+      + +  V +  P  +     +   G +   +       G  A  M+G+++
Sbjct: 501  FTDVTEQFSAATWSNAVLEAAPEAMLIVEQM---GSIVFTNTRCQILFGYDANSMLGLQV 557

Query: 119  CDVSDILHID--PNNHIGDLLKRQNTW---YGKTTLWPIEGTNLYVPIDLAALPIYSRNR 173
              +           + +  L + ++              +G      I L+ LP      
Sbjct: 558  ESLLPEAMRSNHARDRLQFLREGRDRPMANARHVRALKADGGEFVAEIALSILPA-DHEG 616

Query: 174  EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH 233
                 +    +             +  + +F  L     G     +       +      
Sbjct: 617  R---RQVAASIRDMTQKLAVEQKIRDSELRFRGLVTNIPGAVYRTRIGDVWVMEYVSDNI 673

Query: 234  LRMK---------NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYT 284
              +          N+  +       +D  L  +      +++ +   +      + +   
Sbjct: 674  ADITGFAASQFIENRQRTFASLILEEDRELCHQHIDRALAQQETFEVEYRIRHRDGSIRW 733

Query: 285  KKQYFGTLQNNSKESFEYLSHRNHPSLSA----YFDEGENLTPETVDKCPIPFFVYS--- 337
              +              +    +  + S       +          +  P   +      
Sbjct: 734  VHEKGKASYTEEGFPLWFDGSIDDITESKLAMVELEASRLQLTNITESIPCTVYQLRWVS 793

Query: 338  --HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIA 395
                   + + +   +      D ++    ++  +      D    + V           
Sbjct: 794  PADHTFTFLSGAAFHMLGLHREDLLKDFNIIAERIF-----DEERPEVVRALAGKSEDKL 848

Query: 396  ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
               R    +    +   M        N     +  NG   +  + +  + ++ +      
Sbjct: 849  QWVREFRYRHPNGSIRWMEAGASGHYNDDGAII-WNGYVMDITERKAIEEELAVSEAHFK 907

Query: 456  SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
            ++ + ++ GI  ++ +G+IL  N    +  G   E +   P    L             E
Sbjct: 908  ALFDGSTIGIVNVDAKGVILDCNDQYCEDMGQTRESLCGVPIFDVLSLQDKETAKAQFRE 967

Query: 516  ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKL 571
            +    +               + L + + +  L  S        ++M D++E K   ++L
Sbjct: 968  LAEGKVDH-YRGERSFIRPNGEPLWMTVNVSALFDSQKQFESAVVSMVDMTELKLLSDEL 1026

Query: 572  SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
              AK+ A+  S  K DFLA +SHEIRTP+ AIIG S++          + +   Y   I+
Sbjct: 1027 LVAKEEADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTAL----DKKQKNYVEKIE 1082

Query: 632  RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
            R+   +L I+ND+LD SKIE+GK+++   P  LD  + +   +    A  K++ +  + A
Sbjct: 1083 RASKSLLSIINDILDFSKIEAGKLDIESVPFQLDTMLEDLSDMFSEKAAHKQLELLFAVA 1142

Query: 692  NNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGV 746
             N+PR +  D   + Q+ +N+++NAI FT  G ++++S      +     +   VRD+G+
Sbjct: 1143 PNVPRHLFGDSLRLGQVLINLMNNAIKFTERG-EVLLSLNLVEQQNDDVVLRFSVRDSGI 1201

Query: 747  GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
            G+T  +  K  K F Q   S   +  GTGLGL + K +V+   G   + S    G+    
Sbjct: 1202 GLTADQQAKLFKSFSQADTSTTRKYGGTGLGLAICKQLVELMGGTIGVESQFGHGSTFYF 1261

Query: 807  I 807
             
Sbjct: 1262 T 1262



 Score =  116 bits (291), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 53/517 (10%), Positives = 142/517 (27%), Gaps = 34/517 (6%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI--GDLLKRQNT 142
           F  ++D  G L ++SE + K +G    +++  +   +     ++  N       LK +N 
Sbjct: 405 FYCSLDPSGQLAQVSEGVTKVLGMSP-ELLKRKYQRLFTANPLNEKNWEYTDLALKGENV 463

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA---LGKR 199
              +  L    G    + + +  LP+ S   E        +                   
Sbjct: 464 PSHQVELLDASGHPRMLDLFM--LPLVSDTGELMSVE--MLFTDVTEQFSAATWSNAVLE 519

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
              +   + E              +F   +          +        H  D L+  + 
Sbjct: 520 AAPEAMLIVEQMGSIVFTNTRCQILFGYDANSMLGLQVESLLPEAMRSNHARDRLQFLRE 579

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL----QNNSKESFEYLSHRNHPSLSAYF 315
                  ++          +  ++  +     L    +   + +          ++    
Sbjct: 580 GRDRPMANARHV--RALKADGGEFVAEIALSILPADHEGRRQVAASIRDMTQKLAVEQKI 637

Query: 316 DEGENLTPETVDKCPIPFFVYSHGNL---FYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
            + E      V   P   +    G++    Y + +   +T + +   IE        L  
Sbjct: 638 RDSELRFRGLVTNIPGAVYRTRIGDVWVMEYVSDNIADITGFAASQFIENRQRTFASLI- 696

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
            +       + +    + +       R   I+    +   +         +    +  +G
Sbjct: 697 LEEDRELCHQHIDRALAQQETFEVEYR---IRHRDGSIRWVHEKGKASYTEEGFPLWFDG 753

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN----REGIILSTNRAVSKLFGYP 488
              +  ++++   ++E   +QL +I E+    +  +      +      + A   + G  
Sbjct: 754 SIDDITESKLAMVELEASRLQLTNITESIPCTVYQLRWVSPADHTFTFLSGAAFHMLGLH 813

Query: 489 VEDILRKP--FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
            ED+L+        +       +   L       L+    +          +  +     
Sbjct: 814 REDLLKDFNIIAERIFDEERPEVVRALAGKSEDKLQWV--REFRYRHPNGSIRWMEAGAS 871

Query: 547 KLPFSSCYS---LTMHDISEWKQEKNKLSHAKKIAEK 580
                         + DI+E K  + +L+ ++   + 
Sbjct: 872 GHYNDDGAIIWNGYVMDITERKAIEEELAVSEAHFKA 908


>gi|218459898|ref|ZP_03499989.1| probable two-component sensor histidine kinase protein [Rhizobium
           etli Kim 5]
          Length = 374

 Score =  415 bits (1068), Expect = e-113,   Method: Composition-based stats.
 Identities = 191/367 (52%), Positives = 259/367 (70%), Gaps = 3/367 (0%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           K+++EV +L SILE  +DG+ +I  EG I S NR+ S LF Y  ++   KPF +     +
Sbjct: 1   KLQVEVEELRSILETATDGVVVIGTEGDIRSMNRSASALFNYDEQETRGKPFVMLFAHES 60

Query: 506 PSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
              +  YL  +    +   L   +  +G       + L + + +L  S+ Y   + DI++
Sbjct: 61  QKAVLDYLNGLSGHGVASVLNDGREVIGREAAGGFVPLFMTMGRLTSSNGYCAVIRDITQ 120

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
           WK+ +++L +AK  AE  ++HK+DFLARVSHEIRTPL AIIGFS+++  +RFGP+G+PRY
Sbjct: 121 WKRTEDELRNAKGAAETANAHKTDFLARVSHEIRTPLNAIIGFSDMMAGERFGPIGHPRY 180

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
           IEYAN I RSG  VLDIVNDLLDISKIE+G+M+L F  V L+EAVSEA++LVQ  AN +R
Sbjct: 181 IEYANDIGRSGRHVLDIVNDLLDISKIEAGEMDLDFAAVGLNEAVSEAVALVQPQANGQR 240

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
           ++IRT+ ++ +P ++ADLRS+KQIALNILSNAI FTPSGGQI++ST++ +N  V+LRVRD
Sbjct: 241 VIIRTALSHAVPDVVADLRSIKQIALNILSNAIRFTPSGGQIVVSTSYEANGSVVLRVRD 300

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGE-GTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           TG+GMT  EL+ AMKPF Q+ ++Q      GTGLGLPL KAMVDAN   F I S P +GT
Sbjct: 301 TGIGMTRAELDHAMKPFRQVSSTQARHRGDGTGLGLPLTKAMVDANRATFSINSAPNEGT 360

Query: 803 LIEIIFP 809
           L+EI FP
Sbjct: 361 LVEITFP 367


>gi|119898741|ref|YP_933954.1| putative two-component system sensor protein [Azoarcus sp. BH72]
 gi|119671154|emb|CAL95067.1| putative two-component system sensor protein [Azoarcus sp. BH72]
          Length = 916

 Score =  415 bits (1068), Expect = e-113,   Method: Composition-based stats.
 Identities = 125/744 (16%), Positives = 275/744 (36%), Gaps = 44/744 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKRQNTWYGKT 147
            DA G + + +    +  G    +++G     + S     +    I   +    TW+G+ 
Sbjct: 35  TDAAGRIIDANPLFCEISGYSRDELLGRNHRMLKSTRHGAEFYAGIWATIAGGRTWHGEI 94

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                +G+  +V   +  +P    +     +    I          +      +++    
Sbjct: 95  CNRRKDGSEYWVRSTI--VPFPGPDGRPEQY--ISIRTDITAVKQQQQALLISEERLRRG 150

Query: 208 HEIKK-GHSSVEKEKYDIFSQQSPPPHLRMKNKV-----SSLTEYYAHKDDVLKTEKYPL 261
                 G         ++F  +   P   +   +     ++        D          
Sbjct: 151 QAAANIGTWDWNMVTGELFWSERIAPLFGLPEDLRETRYAAFLSAIHPDDREHVLAAVRA 210

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP-----------S 310
              E+     +      +       +     ++    +   L                  
Sbjct: 211 TVDEDRPYEVEHRVVWPDGTVRWLLERGAVTRDAEGNAVHMLGVVQDIHERKIAELSLAE 270

Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
                 E +      V+      + +    G + Y +  +  +  Y   + IE +     
Sbjct: 271 SEQRLRETQARFSFAVEGAGDGVWDWDVASGRMMY-SGHYEAMLGYAPGE-IEPSVKAWM 328

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
               P    +   + +          +   RLH    +      +      +        
Sbjct: 329 RSVHPADIASAQARMMDYLGGRLPTFSTEYRLH--CKDGGYKWVLCRGTVVEREPDGRAR 386

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
              GI  +  +++  + ++         +++A+S  + I +  G +L  NRA ++L GY 
Sbjct: 387 RLIGIHSDISESKAAEERL----ALFRRVIDASSQCVGIADGTGRLLYQNRAHARLLGYE 442

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            ++I   P    L  +   V+   +  ++     + L        K+  + +    I  +
Sbjct: 443 DDEIAGMPVARLLPLDDGGVLAAQIFGMVQD--ARGLVGQLPMRRKDGTVFTSFSNIGFV 500

Query: 549 PFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
             +            D +E    +N+L+ AK  AE+ +  KSDFL+ +SHE+RTP+ A++
Sbjct: 501 KDARGQTQYIFNIFTDFTEELARRNELAEAKDTAERANQAKSDFLSSMSHELRTPMNAVL 560

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           GF+++++             +    I ++G  +L ++N++LD+++IE+G+++L  EPV+L
Sbjct: 561 GFAQLLE---CDDTLTADQRDNVAEILKAGGHLLTLINEVLDLARIEAGRIDLSLEPVAL 617

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724
            EAV +   L+Q  A  + I++  S  + +  + AD   +KQ+ LN+LSNA+ +   GG+
Sbjct: 618 REAVDDCRQLIQPLAAARAIVLEMSLPDEL-VVRADRTRLKQVLLNLLSNAVKYNREGGR 676

Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
           + ++        + L V DTG G+    +    +PF ++  ++    EGTG+GL + + +
Sbjct: 677 VSLAAQCRE-GRLRLSVSDTGAGIAPERMAALFEPFERL-GAEASAIEGTGIGLTITRRL 734

Query: 785 VDANMGKFYIFSTPAKGTLIEIIF 808
           ++   G+    S   +G+   I  
Sbjct: 735 MELMGGEIGAESRVGEGSTFWIEL 758



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 30/271 (11%), Positives = 76/271 (28%), Gaps = 11/271 (4%)

Query: 317 EGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
                    +D+  I     + G +  ANP F  ++ Y   + +    G +  +      
Sbjct: 17  RSLARLAYVLDQHAIVSVTDAAGRIIDANPLFCEISGYSRDELL----GRNHRMLKSTRH 72

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
                  +    +              +    +   +                   I  +
Sbjct: 73  GAEFYAGIWATIAGGRTWHGEICN---RRKDGSEYWVRSTIVPFPGPDGRPEQYISIRTD 129

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE--DILR 494
               +  ++ + I   +L     A + G    N     L  +  ++ LFG P +  +   
Sbjct: 130 ITAVKQQQQALLISEERLRRGQAAANIGTWDWNMVTGELFWSERIAPLFGLPEDLRETRY 189

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554
             F   +  +    +   +   +  D    +E   +      + L  R  + +    +  
Sbjct: 190 AAFLSAIHPDDREHVLAAVRATVDEDRPYEVEHRVVWPDGTVRWLLERGAVTRDAEGNAV 249

Query: 555 --SLTMHDISEWKQEKNKLSHAKKIAEKESS 583
                + DI E K  +  L+ +++   +  +
Sbjct: 250 HMLGVVQDIHERKIAELSLAESEQRLRETQA 280



 Score = 78.1 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 19/140 (13%), Positives = 50/140 (35%), Gaps = 7/140 (5%)

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
             + +L  +L+     +++ +  G I+  N    ++ GY  +++L +   +       + 
Sbjct: 17  RSLARLAYVLDQ-HAIVSVTDAAGRIIDANPLFCEISGYSRDELLGRNHRMLKSTRHGAE 75

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEW 564
               +   ++    +T         K+     +R  I   P        Y     DI+  
Sbjct: 76  FYAGIWATIAGG--RTWHGEICNRRKDGSEYWVRSTIVPFPGPDGRPEQYISIRTDITAV 133

Query: 565 KQEKNKLSHAKKIAEKESSH 584
           KQ++  L  +++   +  + 
Sbjct: 134 KQQQQALLISEERLRRGQAA 153


>gi|119776084|ref|YP_928824.1| sensory box histidine kinase/response regulator [Shewanella
            amazonensis SB2B]
 gi|119768584|gb|ABM01155.1| sensory box histidine kinase/response regulator [Shewanella
            amazonensis SB2B]
          Length = 1763

 Score =  415 bits (1067), Expect = e-113,   Method: Composition-based stats.
 Identities = 132/796 (16%), Positives = 269/796 (33%), Gaps = 54/796 (6%)

Query: 44   PCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELP 103
            P  D   Q    +     V+      + +  V +  P  +      D  G L   +    
Sbjct: 486  PLLDDEGQLISVEMLFNDVTEQFSAAAWSNAVLEAAPEAMLIV---DESGQLVFSNSRCQ 542

Query: 104  KTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTW----YGKTTL-WPIEGTNLY 158
            +  G    +M+ + +  +        +     L            GK        G    
Sbjct: 543  ELFGYSGEEMLNLNIDALIPENERHGHQGKRQLFIEGGRDKVMANGKPLHALKCGGEQFP 602

Query: 159  VPIDLAALPIYSR-NREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSV 217
            V I L+ LP  SR  R+ +       +             +  + +F  L     G    
Sbjct: 603  VQIGLSLLPADSRGQRQVA-----ASIRDLTEQLAVERQIRESESRFRGLVSNIPGAVYR 657

Query: 218  EK---------EKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
             +            +I      P    +++K  S       +D            +E+ +
Sbjct: 658  TRINGTWTMEYVSDNITELTGYPAWHFIESKKRSFGSLILDEDAERCDAIISGALAEQHA 717

Query: 269  LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG----ENLTPE 324
               +      + +     +      +       +    N  + S    E           
Sbjct: 718  FEVEYRIRHRDGSLRWVHEKGKASYDEDGNPVWFDGSLNDITESKLAQERIEQSREQLET 777

Query: 325  TVDKCPIPFF-----VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
              +  P   +             + + + +    +   + ++    ++  +      +  
Sbjct: 778  ITESVPSTVYQLVWRSERDRRFTFLSSAAMATLGFHRNEVLDNFELVAERIVEEDRGEII 837

Query: 380  AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
             +                     ++W              + ++  + +  NG   +   
Sbjct: 838  QMLAGRHGMQWTKAFRYHFPSGELRW---------LEAGARGSKQQDALVWNGYLMDISG 888

Query: 440  TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
             +  + ++        ++ +    GI  ++  GII   N       G   + + RK    
Sbjct: 889  RKRMETELAQSEAHFRALFDNAGIGIVNLDDRGIIKDCNGQFVSDLGISSDSLKRKQLAD 948

Query: 500  FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YS 555
             +     ++       +   +    +         + +L+ + +I   L           
Sbjct: 949  LMHPEDRALATGLYQALAESEQGS-ISGEWRMLDGDGELMWMAVIASVLEEGDGGERSVV 1007

Query: 556  LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
            +++ +I+  K   ++L  AK+ A+  +  KSDFLA +SHEIRTP+ AIIG S++      
Sbjct: 1008 MSIANITRLKLLSDELMAAKEDADAANQAKSDFLANMSHEIRTPMNAIIGMSQLCLQTEL 1067

Query: 616  GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
                + +   Y   I+R+   +L I+ND+LD SKIE+GK+++   P  LD  + +   + 
Sbjct: 1068 ----DRKQRNYVEKIERASKSLLGIINDILDFSKIEAGKLDIEVVPFQLDTILEDLGDMF 1123

Query: 676  QLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTS 733
             + A +K++ +  S A  +P  +  D   + Q+ +N+++NAI FT  G   + IS     
Sbjct: 1124 SVKAADKQLELLFSVAPGVPTHLEGDPLRLSQVLINLMNNAIKFTERGEVMLSISELARD 1183

Query: 734  NEEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
             ++V     VRD+G+G+T  +  K  K F Q   S   +  GTGLGL + K +V+   G+
Sbjct: 1184 EDQVQLKFAVRDSGIGLTAEQQAKLFKSFSQADTSTTRKYGGTGLGLAICKQLVELMGGE 1243

Query: 792  FYIFSTPAKGTLIEII 807
              + S    G+     
Sbjct: 1244 IGVDSQFGNGSTFYFT 1259



 Score = 46.2 bits (108), Expect = 0.023,   Method: Composition-based stats.
 Identities = 22/177 (12%), Positives = 56/177 (31%), Gaps = 9/177 (5%)

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD--GIAIINREGII 474
           P     +      +     E ++ R  +  ++    +  ++++  SD      +  +G I
Sbjct: 357 PEGVVREIATLSHKFNEMAEVLEER-EQALLDSRGNRFATLIDGMSDKSFYCSMTPDGNI 415

Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
              +  V K+ G   E + RK   +F           ++   L  +     +    G   
Sbjct: 416 DQVSAGVEKVLGISPEVLKRKYQRLFSSNAINEQNWQFMEMALRGEAVPPHQVEMAG--A 473

Query: 535 EEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
           +  L  L + ++ L       +      +D++E        +   + A +      +
Sbjct: 474 DGSLRRLDLFMQPLLDDEGQLISVEMLFNDVTEQFSAAAWSNAVLEAAPEAMLIVDE 530


>gi|171060737|ref|YP_001793086.1| PAS/PAC sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
 gi|170778182|gb|ACB36321.1| PAS/PAC sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
          Length = 1333

 Score =  415 bits (1066), Expect = e-113,   Method: Composition-based stats.
 Identities = 128/757 (16%), Positives = 259/757 (34%), Gaps = 52/757 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQ-NTWYGK 146
           +   G    ++ +L + +G  A +++     D++    +  + + +G LL+ + +T+  +
Sbjct: 166 VGPDGRWLRVNRKLCEIVGYGADELLARTFQDITHPDDLRTDLDQVGRLLRGEISTYTLE 225

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK------RL 200
                 +G+ L++ + ++   +   + E   F    +V   +         +      R 
Sbjct: 226 KRYVRKDGSLLWIQLTVSL--VRRIDGEPDHF--ISVVENIQARKAAEEERRLFSEALRQ 281

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
             +   + + +   S V      +          R    VS LT                
Sbjct: 282 ASQPLLMADAQFHISYVNPAFSQLLGYAPSDLAGR---HVSCLTPPDPAALQAQAEGIVE 338

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
           L T          D    +          G +++   E   +++           D+   
Sbjct: 339 LKTLGR--FSGPLDRLACDGTVIPLAANIGPVRDARGEVVAWVASYLDLRPLREKDKLLR 396

Query: 321 LTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIE-------IAGGLSTLLD- 371
           +    +++ P    V      + Y N + L  + Y   + +               LL  
Sbjct: 397 MLALAIEQSPANVVVTDLESKIEYVNDALLHDSGYSRAELLGTSARSLLSPQTTPELLQG 456

Query: 372 --APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ------ 423
                  D      ++  R + +    +A +  +Q  R        +  +  ++      
Sbjct: 457 IGEALARDRRWRGQLINRRKEGSEYTTAAVVSALQDERGRVTHFVAVQQDITDRLHDAAE 516

Query: 424 -FPENMPQNGIEPEDVDTRINKRKMEIEVMQL-CSILEATSDGIAIINREGIILSTNRAV 481
                     +  E         +   E  Q   ++ +A    +   + +      N A 
Sbjct: 517 LERYRCHLEVLVAERTRQLEEVNRSLSEQQQFVRNVADAVPALVGYFDPQLYCRFANAAY 576

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
            + +G   ++++       +           +   L  +  +    +        + L  
Sbjct: 577 LEWWGLRPDEVVGLHARELIGDEMFRRNEPSMRAALRGESPRLQRALPHTDGSLRETLIA 636

Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK-------ESSHKSDFLARVSH 594
            +  ++      + + + DI+E K  + +++                +  KS FLA +SH
Sbjct: 637 YVPDRQDGQVRGFIVVVSDITEIKVAEQQMAALNAQLAARAIEAEGATRAKSAFLANMSH 696

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           EIRTP+ AIIG + ++       L      E    ID +   +L I+ND+LD+SKI++GK
Sbjct: 697 EIRTPMNAIIGLTHLMARDTRDSL----QRERLGKIDSAAKHLLQIINDVLDLSKIDAGK 752

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714
           + L     +LDE +S A  LV   ANEK + +          +  D   + Q  +N+L+N
Sbjct: 753 LVLEDTEFNLDEVLSRAFELVGESANEKGLELVLDTDRLPSHLRGDPTRLSQALINLLAN 812

Query: 715 AIHFTPSGGQIIIS----TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           A+ FT +G  + +            +V   V+DTG G+           F Q   S   R
Sbjct: 813 AVKFTHAG-WVRLRGELLAEDRQRVQVRFEVQDTGEGIEPERFGSLFNAFEQADASTTRR 871

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
             GTGLGL L + +V    G+  + S P  G+     
Sbjct: 872 HGGTGLGLALTQHLVTLMGGEMGVRSEPGVGSTFWFT 908



 Score =  101 bits (251), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 35/298 (11%), Positives = 75/298 (25%), Gaps = 14/298 (4%)

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
           P  +    +  +   +  +  +          LQ   +   E L  R   +      E E
Sbjct: 92  PAQSLASGAASDVLQWGMLVASGLLTSALSHALQRTRRREAEQL--RQLAATRQSLTESE 149

Query: 320 NLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
                  ++  +    V   G     N     +  Y + + +                D+
Sbjct: 150 RRFQAAFEQAAVGIALVGPDGRWLRVNRKLCEIVGYGADELLA------RTFQDITHPDD 203

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
                  + R  R  I+             + L +            E      +     
Sbjct: 204 LRTDLDQVGRLLRGEISTYTLEKRYVRKDGSLLWIQLTVSLVRRIDGEPDHFISVVENI- 262

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
                ++  E E       L   S  + + + +  I   N A S+L GY   D+  +  +
Sbjct: 263 ---QARKAAEEERRLFSEALRQASQPLLMADAQFHISYVNPAFSQLLGYAPSDLAGRHVS 319

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556
                  P+ +      I+ L               +  ++ L   I  +  +    +
Sbjct: 320 CLTPP-DPAALQAQAEGIVELKTLGRFSGPLDRLACDGTVIPLAANIGPVRDARGEVV 376



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 21/178 (11%), Positives = 57/178 (32%), Gaps = 5/178 (2%)

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469
            + +       A        +     +       ++ +     +  +  E  + GIA++ 
Sbjct: 108 GMLVASGLLTSALSHALQRTRRREAEQLRQLAATRQSLTESERRFQAAFEQAAVGIALVG 167

Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
            +G  L  NR + ++ GY  +++L + F      +        +  +L      T     
Sbjct: 168 PDGRWLRVNRKLCEIVGYGADELLARTFQDITHPDDLRTDLDQVGRLLR-GEISTYTLEK 226

Query: 530 LGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
               K+  LL +++ +  +         +   + +I   K  + +     +   + S 
Sbjct: 227 RYVRKDGSLLWIQLTVSLVRRIDGEPDHFISVVENIQARKAAEEERRLFSEALRQASQ 284


>gi|94263978|ref|ZP_01287780.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
 gi|93455650|gb|EAT05832.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
          Length = 605

 Score =  415 bits (1066), Expect = e-113,   Method: Composition-based stats.
 Identities = 114/519 (21%), Positives = 227/519 (43%), Gaps = 19/519 (3%)

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365
             P +     E E    +  +      + + S+G   +       +    +   +     
Sbjct: 4   TDPHILLKLTEAEQRFRDVTEAAGEYIWELDSNGLYTFVTKPIETILGVPAEQALGRTP- 62

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
                D     +   +        +R      A  H    +  + +          +   
Sbjct: 63  ----FDFMPPEEAEWVGAWFTKLVERRE-PFRALEHCSLKSDGSIVWQRVSGVPILDGAG 117

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
           E     G   +    ++ ++ +E    +L  IL+ T +G   I+ E  +LS N++  K+F
Sbjct: 118 ELRGYRGAALDITQEKLARQALEEREKRLALILDNTVEGFITIDTERRVLSFNKSAEKIF 177

Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRI 543
           GY  +++L +   + +     S  + Y++  L+  +++ +   +   G  K  ++  L++
Sbjct: 178 GYRADEVLGRNVKMLMPDPYHSGHDQYVSNYLTSGVKKIIGIGREVQGRRKTGEIFPLQL 237

Query: 544 IIKK--LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
            + +  +     +  ++ DI+E K+++     AK+ AE  +  KS+FLA +SHE+RTP+ 
Sbjct: 238 AVSETLVGEERLFVGSIQDITERKRQEALQRQAKEAAEAANRSKSEFLANMSHEMRTPMN 297

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
            IIG  ++       P   P+  +Y   I  S   +L ++ND LD++++E+GKM +   P
Sbjct: 298 VIIGLGQLALKSE--PPPPPKLHDYLETITASATTLLVLINDTLDLARLETGKMAIDQIP 355

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTP 720
             L + +++   L+   A EK + +  + A  +P +++ D   + Q+ +N+ SNAI F+ 
Sbjct: 356 FDLSDILNKLEKLMGQRAAEKGLQLVFAVAPTVPDQMVGDPHRLSQVLINLTSNAIKFSD 415

Query: 721 SGGQIIISTTHTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
            G ++ +S     +      + + VRDTG+G+   +LE   +PF Q   S   +  GTGL
Sbjct: 416 KG-EVSLSFEMADSTADTFTLRVTVRDTGIGIAPEQLETIFQPFTQADGSSTRKYGGTGL 474

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
           GL +A  +V    GK  + S P +G+      PL   + 
Sbjct: 475 GLSIANRLVQLMGGKLEVESEPGQGSSFFFNCPLGRIAQ 513



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/254 (9%), Positives = 71/254 (27%), Gaps = 12/254 (4%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTW 143
           + W +D++G    +++ +   +G  A + +G    D       +        L++R+  +
Sbjct: 29  YIWELDSNGLYTFVTKPIETILGVPAEQALGRTPFDFMPPEEAEWVGAWFTKLVERREPF 88

Query: 144 YGKTTL-WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
                     +G+   V   ++ +PI     E  G+RG  +      +   R   +  +K
Sbjct: 89  RALEHCSLKSDGSI--VWQRVSGVPILDGAGELRGYRGAAL--DITQEKLARQALEEREK 144

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSS---LTEYYAHKDDVLKT 256
           + + + +           +  + S           R    +     +     +     + 
Sbjct: 145 RLALILDNTVEGFITIDTERRVLSFNKSAEKIFGYRADEVLGRNVKMLMPDPYHSGHDQY 204

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
               L +  +  +    +                  +    E   ++      +     +
Sbjct: 205 VSNYLTSGVKKIIGIGREVQGRRKTGEIFPLQLAVSETLVGEERLFVGSIQDITERKRQE 264

Query: 317 EGENLTPETVDKCP 330
             +    E  +   
Sbjct: 265 ALQRQAKEAAEAAN 278


>gi|254500165|ref|ZP_05112316.1| hypothetical protein SADFL11_201 [Labrenzia alexandrii DFL-11]
 gi|222436236|gb|EEE42915.1| hypothetical protein SADFL11_201 [Labrenzia alexandrii DFL-11]
          Length = 1417

 Score =  415 bits (1066), Expect = e-113,   Method: Composition-based stats.
 Identities = 177/565 (31%), Positives = 291/565 (51%), Gaps = 29/565 (5%)

Query: 263  TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
             +   S PE++ F  I      + +      +            + P L     E   + 
Sbjct: 857  DTTGLSRPERQAFRKIAEALGARLEGDLEGWDEPDADETDNREEDLPDLPPEVPEAGPID 916

Query: 323  PETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI- 381
            P  +D+ PI   +    ++ YAN + L +  Y ++ ++  AGGL  L         +A  
Sbjct: 917  PSLLDRLPIGIAIAHDRDVLYANKALLSILGYGAISELTEAGGLEALFIDEAEDLPDADG 976

Query: 382  ------KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
                  + + +  +D    +  A +H++ WN    L ++    E+ N+      +     
Sbjct: 977  MVGELDETMKVRLADGGVRSVDAHMHSVPWNGSRGLMISI--TERFNKPAPAASEGAAPN 1034

Query: 436  EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
               + R        ++ ++ +ILE  +DG+ +++  G IL  N +   LF     +++  
Sbjct: 1035 FFKEVRSELDGARTQISEMETILETATDGVLVLDERGTILKVNGSAEALFSASRGEMIGS 1094

Query: 496  PFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSC 553
            PF  FL   +      YL  +    +   L   +  LG      L+ L + + ++     
Sbjct: 1095 PFIEFLAPESHRSAEDYLDGLARNGVASILNDGREVLGKVPTGGLIPLFMTMGRIGDKDD 1154

Query: 554  --YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
              + + + DI++WK  + +L+ AK+ AE  SS KSDFLA++SHEIRTPL AIIGFSEV+ 
Sbjct: 1155 TKFCVVLRDITQWKTAEEELTQAKRQAENASSQKSDFLAKISHEIRTPLNAIIGFSEVMM 1214

Query: 612  NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
             +RFGP+GN RY +Y   I  SG+ ++ ++NDLLD+SKIE+GK +L F  VS ++ ++E 
Sbjct: 1215 EERFGPIGNDRYKDYLKDIRTSGSHIMSLINDLLDLSKIEAGKQDLKFSAVSANDIINEC 1274

Query: 672  ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
            ++L+Q  AN +R++IR S  + +P I+AD RS++QI LN+LSN I +  SGGQ+I+STT 
Sbjct: 1275 VALMQPQANRERVIIRASLPDAVPNIVADPRSLRQIVLNLLSNGIKYNKSGGQVILSTTL 1334

Query: 732  TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ-------IRGEGTGLGLPLAKAM 784
              N EV +RVRDTG GM   +L  A++PF Q+  +++       +            KA+
Sbjct: 1335 EPNGEVSIRVRDTGSGMNPKQLAAALEPFRQVHTARRGGGTGLGLPLT---------KAL 1385

Query: 785  VDANMGKFYIFSTPAKGTLIEIIFP 809
             +AN  +F+I STP +GTL+EI FP
Sbjct: 1386 AEANRAQFHIDSTPDQGTLVEITFP 1410



 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 87/487 (17%), Positives = 162/487 (33%), Gaps = 54/487 (11%)

Query: 6   IISNPEDILTSNCKGNTQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVSNT 65
           ++    + L S    + +D + +  DN      +  E P  ++       D + ++    
Sbjct: 246 VLEEAAEALPSMAAADPEDKTAETQDNLEIATDAAAEGPDSEAEAVQPPADGDDQAQEPA 305

Query: 66  NYLD--------------------------------SENTFVFDPIPRTVRFTWNIDAHG 93
           +  D                                 E  FVF P  R VRF W +D   
Sbjct: 306 DTADKAALIDSAPALGAPEDLDASSNAPENGPAADEEEPEFVFQPGRRPVRFAWKMDISQ 365

Query: 94  YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIE 153
               +S+E    +G  +  ++G+   +V++   +DP   I   L R++TW GKT  WP+ 
Sbjct: 366 RFTFLSDEFANVVGPASADIVGLTWAEVANRFDLDPRGSIARALDRRDTWSGKTVDWPVT 425

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
              L VP+D+AALP + RNR F G+RGFG+         P A    L    +   E    
Sbjct: 426 DAALRVPVDMAALPAFDRNRTFEGYRGFGVCRAADAK--PGARIAALSPAMAAFDEHLDD 483

Query: 214 HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE 273
             S   E+    S ++        +    + + ++ ++  +   + P + + E   P+Q 
Sbjct: 484 GQSEADEEDAHASNET-----EPVDDHHEVVDKHSVEESEVSEIEAPPVPAAEDLKPKQP 538

Query: 274 DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF 333
           D   +             + + S+ S       + P   A  +E  + +    D+     
Sbjct: 539 D--ALAGKMAIGASAAALVGSLSRFSDGSAQTSSEPHTPAMAEEAVDQSASLSDEPLSDE 596

Query: 334 FVYSHGNLFYAN---------PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
                      N          + L      +V D+E     S +         N+    
Sbjct: 597 QTTIDDTAEEPNSPLEAAMKMDAALQQGVSGNVLDLETPEIDSDIEKVADDDGTNSPSEA 656

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP-EDVDTRIN 443
           +   S        A L   +           +    +++ PE    +G  P +  +    
Sbjct: 657 VKANSASAQEPEIADL---RKPEAAETIQHVVAGSVSDEAPEPAGISGPAPLDASEIETA 713

Query: 444 KRKMEIE 450
            R ++  
Sbjct: 714 VRSLQKS 720


>gi|254445718|ref|ZP_05059194.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
 gi|198260026|gb|EDY84334.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
          Length = 1149

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 134/743 (18%), Positives = 276/743 (37%), Gaps = 50/743 (6%)

Query: 90  DAHGY---LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK 146
           D  G    ++  ++      G     ++G +L  V         +   +          +
Sbjct: 135 DDAGRDFVIRFANKATETFFGQPIESVVGRQLKTVFPYFDDLELDSYFEEAATGQPALFQ 194

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
            ++   +G    +  +L+     SR+ ++       I    R   +   +  +L+K  + 
Sbjct: 195 RSVTFRDG----IEAELSVSVFSSRDGDYV------IC--LRDVTEEVRVQSKLEKSANE 242

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK-NKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
           L  +      V        S +   P++  K  ++  +      +D         +   E
Sbjct: 243 LDRLSAQVPGVYFHLSMNESGEPSFPYISEKVKELLGVEAAEVMEDASAAMGAVCIEDME 302

Query: 266 E------------SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
                        + L  +   +  +  +          +  S     +       ++  
Sbjct: 303 RVYESLAVSSQNLTPLYIEYRVNMPSGRKKWV-ATKAIPEKRSGLRVVWYGIFEDITMRK 361

Query: 314 YFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
             +E   +    V+        V   G+  Y N SF  +  Y+++D +   GG+  L   
Sbjct: 362 ESEERLRMVSAAVEASSDFVLMVNRDGDALYRNNSFTNIVGYQTIDLLNEKGGVKALFGE 421

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
             + D    + +                  +       L + F      ++         
Sbjct: 422 KLVYDKILQETLEYGHWQGDV--------QVMTESGRQLDIYFRSVSVKDEKGRVSALVV 473

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE-D 491
              +    +  +  ++     L +  EA +DGI ++N  GI+ + NR   K++G      
Sbjct: 474 TGTDVTHNKRRQNLLKRYNSVLKAQSEAATDGILVVNERGIVSNFNRRFCKIWGLSTNLM 533

Query: 492 ILRKP-FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KL 548
            + +P     +     +    +    + +   +T     +   ++ +      I     L
Sbjct: 534 DVGRPEKIWNVASKQVADSEAFFERAMKISEDETETFKDVLDFEDGRTFERTSIPISSPL 593

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
             S       H+++E K+ + +L    + AE+ +  KS FLA +SHEIRTP+  IIG + 
Sbjct: 594 GESYGRVWFFHEVTEQKRSEERLRATMREAEEANRAKSYFLANMSHEIRTPMNGIIGMTG 653

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
           ++              +Y + I  S   +L ++ND+LD SKIESGK+ +      L + +
Sbjct: 654 LLSETTLEN----EQHDYVDTIRASSEALLVVINDILDFSKIESGKLEIENIMFDLRDCM 709

Query: 669 SEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQI-I 726
            EAI  + + A EK + +   F   +P  +L D   ++Q+ +N++ NA+ FT  GG +  
Sbjct: 710 EEAIDTLAIQATEKGLDVSYVFGKEVPGSLLGDPTRLRQVIVNLIGNAVKFTAKGGVVVR 769

Query: 727 ISTTHTSNEEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
           +   H  +++VI   +V DTG+G+    +++    F Q+  S   +  GTGLGL ++K +
Sbjct: 770 VDPFHIKDDDVILHFKVTDTGIGIPADRIDRLFGSFSQVDASTTRKYGGTGLGLAISKNL 829

Query: 785 VDANMGKFYIFSTPAKGTLIEII 807
           V+   G  ++ S   +G+     
Sbjct: 830 VELMGGSMWVESEDGEGSTFHFT 852


>gi|217972048|ref|YP_002356799.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS223]
 gi|217497183|gb|ACK45376.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS223]
          Length = 1792

 Score =  414 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 124/756 (16%), Positives = 267/756 (35%), Gaps = 50/756 (6%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLC-----DVSDILHIDPNNHIGDLLKRQNTW 143
            +D  G +   +    +  G     M+G+++      ++ +   ++    + +   R    
Sbjct: 531  VDELGQIVFTNSRCLQLFGYETGAMLGLQVEALLPQELGERHVLERQTFLREGRDRSMAN 590

Query: 144  YGKTTLWPIEGTNLYVPIDLAALPI-YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
                     +G      I L+ LP  +   R+ +       +             +  ++
Sbjct: 591  ARHVRALKADGNEFIAEIALSILPTAFDGQRQVA-----ASIRDMTQKLAVEQKIRDSEQ 645

Query: 203  KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS---------LTEYYAHKDDV 253
            +F  L     G     +     F +        +    +S                +D  
Sbjct: 646  RFRGLVTNIPGAVYRTRIGDVWFMEYISDNIAEITGYAASQFIENRQRTFASLILEEDRP 705

Query: 254  LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
                      +++ +   +      + +     +              +    +  + S 
Sbjct: 706  TCHLHIDRALAQQETFEVEYRIRHRDGSIRWVHEKGKASYTEEGIPLWFDGSIDDITESK 765

Query: 314  YF----DEGENLTPETVDKCPIPFFVYS-----HGNLFYANPSFLLLTKYKSVDDIEIAG 364
                  ++         +  P   +             + + + + +      D +    
Sbjct: 766  LALVQLEQSRQQMTNITESIPCTVYQLQWHSPTDRRFTFLSGAAMKMLGLHRDDLMSNFD 825

Query: 365  GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
             ++  +   +  D   ++ +     DR       R    +    +   M         + 
Sbjct: 826  IIAERIFDEERPD--VVRALSGKSEDRLQW---IREFRYRHPNGSICWMEAGASGHLGEE 880

Query: 425  PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
               +  NG   +    +  ++++ +      ++ +  + GI  ++ +G+IL  N      
Sbjct: 881  G-ALTWNGYVMDITQRKTIEQELALSEAHFKALFDGATIGIVNVDIKGVILDCNDQFCAD 939

Query: 485  FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
                   +        L +    +      E++   +                 L + + 
Sbjct: 940  MALSRNHLRNTAIFEVLSEQDQPIAKAQFQELVEGKIDH-YRGERSFIRPSGAPLWMTVN 998

Query: 545  IKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
            +  L  +        ++M D++E K   ++L  AK+ A+  S  K DFLA +SHEIRTP+
Sbjct: 999  VSALLDAQGQFESAVISMVDMTELKLLSDELLLAKEQADAASKAKGDFLANMSHEIRTPM 1058

Query: 601  TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
             AIIG S++          + +   Y   I+R+   +L I+ND+LD SKIE+GK+++   
Sbjct: 1059 NAIIGMSQLCLQTEL----DKKQKNYVEKIERASQSLLSIINDILDFSKIEAGKLDIDSV 1114

Query: 661  PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFT 719
            P  LD  + +   +    A  K+I +  + A N+PR +L D   + Q+ +N+++NAI FT
Sbjct: 1115 PFQLDTMLEDLSDMFSEKAAHKQIELLFAVAPNVPRYLLGDSLRLGQVLINLMNNAIKFT 1174

Query: 720  PSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
              G ++++S +    ++    +   VRD+G+G+T  +  K  K F Q   S   +  GTG
Sbjct: 1175 ERG-EVLLSLSLVEQQDDDVVLRFSVRDSGIGLTEQQQAKLFKSFTQADTSTTRKYGGTG 1233

Query: 776  LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
            LGL + K +V+   GK  + S    G+       L+
Sbjct: 1234 LGLAICKQLVELMGGKIGVESQLGHGSTFYFTVKLH 1269



 Score =  113 bits (282), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 57/584 (9%), Positives = 160/584 (27%), Gaps = 58/584 (9%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNT 142
           F  ++D  G L ++SE + K +G     ++  +   +     ++  N       LK QN 
Sbjct: 408 FYCSLDPDGQLAQVSEGVTKVLGISPD-LLKRKYQRLFSANPLNEKNWQYTDLALKGQNV 466

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA---LGKR 199
              +  +   +G    + + +   P+ S   E        +                   
Sbjct: 467 PSHQVEMLDDQGHLRRLDVFM--QPLMSDTNELMSVE--MLFTDVTEQFSAAVWSNAVLE 522

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
              +   + +              +F  ++          +        H  +     + 
Sbjct: 523 AAPEAMLIVDELGQIVFTNSRCLQLFGYETGAMLGLQVEALLPQELGERHVLERQTFLRE 582

Query: 260 PLLTSEESSLPEQEDFHTINL--NQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
               S  ++   +      N    +              + +          ++     +
Sbjct: 583 GRDRSMANARHVRALKADGNEFIAEIALSILPTAFDGQRQVAASIRDMTQKLAVEQKIRD 642

Query: 318 GENLTPETVDKCPIPFFVYSHGNL---FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
            E      V   P   +    G++    Y + +   +T Y +   IE          +  
Sbjct: 643 SEQRFRGLVTNIPGAVYRTRIGDVWFMEYISDNIAEITGYAASQFIENRQ---RTFASLI 699

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
           L ++     + + R+           + I+    +   +         +    +  +G  
Sbjct: 700 LEEDRPTCHLHIDRALAQQETFEVE-YRIRHRDGSIRWVHEKGKASYTEEGIPLWFDGSI 758

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN----REGIILSTNRAVSKLFGYPVE 490
            +  ++++   ++E    Q+ +I E+    +  +      +      + A  K+ G   +
Sbjct: 759 DDITESKLALVQLEQSRQQMTNITESIPCTVYQLQWHSPTDRRFTFLSGAAMKMLGLHRD 818

Query: 491 DIL--RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
           D++         +       +   L+      L+    +          +  +       
Sbjct: 819 DLMSNFDIIAERIFDEERPDVVRALSGKSEDRLQWI--REFRYRHPNGSICWMEAGASGH 876

Query: 549 PFSSCYS---LTMHDISEWKQEKNKLSHAKKIAEKESSHKS-----------------DF 588
                       + DI++ K  + +L+ ++   +      +                  F
Sbjct: 877 LGEEGALTWNGYVMDITQRKTIEQELALSEAHFKALFDGATIGIVNVDIKGVILDCNDQF 936

Query: 589 LARVS----HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
            A ++    H +R   TAI      + +++  P+   ++ E   
Sbjct: 937 CADMALSRNH-LRN--TAIF----EVLSEQDQPIAKAQFQELVE 973



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 40/352 (11%), Positives = 97/352 (27%), Gaps = 23/352 (6%)

Query: 235 RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294
            + + + +L+                L    E        F      Q    +   +   
Sbjct: 309 DVASIILNLSLLTLLLLLTCYLAAKRLTRPLELLESGILSFGQGKTQQLIVPKGAVSEIV 368

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF---VYSHGNLFYANPSFLLL 351
               +F  ++        A  D   N     +D      F   +   G L   +     +
Sbjct: 369 TLSNTFNQMAELLADREQAILDSRGNRFARLIDGMSDKSFYCSLDPDGQLAQVSEGVTKV 428

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411
                 D ++       L  A  L++ N     +  +         +    +  ++ +  
Sbjct: 429 LGISP-DLLKRKYQ--RLFSANPLNEKNWQYTDLALKGQ----NVPSHQVEMLDDQGHLR 481

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471
            +        +   E M    +  +  +                ++LEA  + + I++  
Sbjct: 482 RLDVFMQPLMSDTNELMSVEMLFTDVTEQFSAAVWS-------NAVLEAAPEAMLIVDEL 534

Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL--EKIT 529
           G I+ TN    +LFGY    +L       L Q             L     +++   +  
Sbjct: 535 GQIVFTNSRCLQLFGYETGAMLGLQVEALLPQELGERHVLERQTFLREGRDRSMANARHV 594

Query: 530 LGSTKEEKLL----SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI 577
                +        +L I+          + ++ D+++    + K+  +++ 
Sbjct: 595 RALKADGNEFIAEIALSILPTAFDGQRQVAASIRDMTQKLAVEQKIRDSEQR 646


>gi|121605766|ref|YP_983095.1| multi-sensor hybrid histidine kinase [Polaromonas naphthalenivorans
            CJ2]
 gi|120594735|gb|ABM38174.1| multi-sensor hybrid histidine kinase [Polaromonas naphthalenivorans
            CJ2]
          Length = 1261

 Score =  413 bits (1062), Expect = e-113,   Method: Composition-based stats.
 Identities = 123/776 (15%), Positives = 242/776 (31%), Gaps = 70/776 (9%)

Query: 86   TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWY 144
             + +D       I++ +    G  A + IG  L ++      D     +  +L+      
Sbjct: 363  LFMLDTDLRYVRINQAMADLNGLSAERHIGRTLRELLTAGLADAVEPLLRQVLETGRPEL 422

Query: 145  GKTTL---WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
             +       P  G   +  +  +  P+ + +   +G  G  +V             +   
Sbjct: 423  NREVHGATLPRSGEQRHWLV--SYHPVQAGDGTITGVHG--VVQEITERKQAEDALRESQ 478

Query: 202  KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK----------- 250
            +          GH +V  E   I           ++N+ + +                  
Sbjct: 479  RFLHSTLNALSGHIAVLDEFGTILEINEAWSRFALENQTAGVNASVGVGVNYLQHCEHCE 538

Query: 251  -------DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ--NNSKESFE 301
                   D     E    + +   +  E E        Q          Q     +    
Sbjct: 539  HKSFQCGDTSAYAEAIKDVIAGRRTRFEMEYACHSPTQQRWFVMRVTRFQSPGPVRIVIV 598

Query: 302  YLSHRNHPSLSAYFDEGENLTPETVDKCPIPF----FVYSHG------NLFYANPSFLLL 351
            +              + E       +     F     ++              NP+F   
Sbjct: 599  HDDCTERKLAENASRDTEERYRNLFNSMDEGFCLIEMIFDGQQKPVDYRFLEVNPAFETQ 658

Query: 352  TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411
            T       I    G       P L +    +           +     +         +L
Sbjct: 659  TG------IRNVTGKRVREIMPDL-EAYWFEIYGKVALTGESLRFINEV--------KAL 703

Query: 412  AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471
               +         PEN     I             +     +   + +     I   +  
Sbjct: 704  DQWWDVHATRLGGPENRQVAIIFDNVTQRMKADEALRQSEARFRLLFDRGPVAIYSCDTS 763

Query: 472  GIILSTNRAVSKLFGYPV------EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
            G+I   N    KL+G         E          L+    +   + +  +L  ++ Q  
Sbjct: 764  GMIKEFNPCAVKLWGREPTPDDIDERFCGSSRVYCLDGTLLTPEQNPVIAVLKGEMLQAH 823

Query: 526  EKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKE 581
            +   L    +   + +   I  L  S           +DI+E  + + K     +   + 
Sbjct: 824  DVEALIERPDGSRIHVIANIVPLRNSWGEITGAINCFYDITERSRLEQKTQEQAQALAEL 883

Query: 582  SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
               K +FLA +SHE+R PL  +    ++++ Q+          +  + I+R    +  +V
Sbjct: 884  HQRKDEFLAMLSHELRNPLAPLASAVQLLQRQKNEAP----QQQALSIIERQTGQLKHLV 939

Query: 642  NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701
            +DL++IS+I SG + L  E VSL + V  A+   +    ++R  +  S       + AD 
Sbjct: 940  DDLMEISRITSGSVRLRQERVSLGDVVERALETTRPLMLQRRHELAVSLPPEPLWLHADA 999

Query: 702  RSVKQIALNILSNAIHFTPSGGQIIISTTHTSN---EEVILRVRDTGVGMTNYELEKAMK 758
              ++Q+ +N+L+NA  +T  GG+I +S            ++RVRDTG+G+    L +   
Sbjct: 1000 TRLEQVLVNLLTNAAKYTDKGGRIWLSAGQEEAAGTGAAVVRVRDTGIGIAPELLPRIFD 1059

Query: 759  PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
             F Q   S      G G+GL L + +++ + G   + S   +G+   +  P+    
Sbjct: 1060 LFTQAERSIDRSQGGLGIGLCLVRRLLELHGGTVDVRSVLGQGSEFVVRLPVMPAD 1115



 Score =  107 bits (268), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 35/352 (9%), Positives = 88/352 (25%), Gaps = 29/352 (8%)

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
                       E            +            L+                    
Sbjct: 160 AVAHDARRQFDTEDLRQLASLGRFASAAYQATMLLDTALEQGQVAQGLMDEAVQARLAMG 219

Query: 314 YFDEGENLTPETVDKCPIPFFV-------YSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
              E E       +     F +               AN +F   T  + V         
Sbjct: 220 KLRESEEHYRMCFESIEEGFCIIEKLEGETLDFRYVEANAAFAAQTSLRDV-------VG 272

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
            TL           +            I         +        +    F   +    
Sbjct: 273 KTLRQVLPDEFEERLAIYDTVTRTGQPIKIQ------RRFGSQGRVLELYAFRVEDDM-- 324

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
           +        +  + +  + K+  +  +L ++      G+ +++ +   +  N+A++ L G
Sbjct: 325 HRRVAINFQDITERKSAEEKLARQAAELATLYATAPVGLFMLDTDLRYVRINQAMADLNG 384

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG----STKEEKLLSLR 542
              E  + +     L       +   L ++L     + L +   G     + E++   + 
Sbjct: 385 LSAERHIGRTLRELLTAGLADAVEPLLRQVLETGRPE-LNREVHGATLPRSGEQRHWLVS 443

Query: 543 IIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
               +      +     + +I+E KQ ++ L  +++      +  S  +A +
Sbjct: 444 YHPVQAGDGTITGVHGVVQEITERKQAEDALRESQRFLHSTLNALSGHIAVL 495


>gi|218781754|ref|YP_002433072.1| multi-sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218763138|gb|ACL05604.1| multi-sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 1104

 Score =  412 bits (1059), Expect = e-112,   Method: Composition-based stats.
 Identities = 103/530 (19%), Positives = 204/530 (38%), Gaps = 24/530 (4%)

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTK 353
            +                   ++        +D       V      + +ANP++  +  
Sbjct: 171 EAIREEIQDGLNQEREKLKEANDTLQYLKTAIDHSVDGIAVAGSDKRIKFANPAWASMHG 230

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
               +     G  + +  +    +N     +    S  +       +  ++ +       
Sbjct: 231 LTQKEV---EGAHARIFHSTAQYENEVAPFLKRVASKGSNY---GEMGHVRKDG-TEFPC 283

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
                    +  +      +  +  + +  +  +     +  ++LEAT D + + +++  
Sbjct: 284 WMSISLIRGEGEDPTGVVAVAKDISERKAAEAALIASEERNRALLEATPDAVTVYDKDAK 343

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
           ++  N A  +LFG+  E++L KP   F+        +  +  +      +++ +     T
Sbjct: 344 VIYVNPAFEQLFGWTAEEVLGKPLD-FVPSEERPKTDELIARMRKG---ESVLEEIKRYT 399

Query: 534 KEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
           K+ +LL +R                 +   DI++ K+ +  L  AKK AE  +  KS F+
Sbjct: 400 KDGRLLYIRASASMFWDKDRHFLGTVVISRDITDRKKAEEALRKAKKDAETANIAKSQFV 459

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
           A +SHEIRTP+  +IG + ++ +       + R  E+A  I  S   +L ++ND+LD SK
Sbjct: 460 ANMSHEIRTPMNGVIGMTGLLLDTDL----DERQREFAETIQSSAANLLTVINDILDFSK 515

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIA 708
           IE+ K+ L      L   + +   L+ + A  K +        ++P +L  D   ++Q+ 
Sbjct: 516 IEADKLELESIGFDLRFTLEDVSDLLAIKAQAKNLEFVCMVDPDVPSLLVGDPGRLRQLI 575

Query: 709 LNILSNAIHFTPSGGQIIISTT---HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           +NI +NAI FT  G  ++             +   + DTG+G+   +      PF Q+  
Sbjct: 576 INICNNAIKFTREGEVVVRVVGEEIKEDKAYLRFTITDTGIGIPEDKQNDLFAPFTQMDA 635

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
           S      GTGLGL + K +V    G+  + S P +G       P      
Sbjct: 636 STTREYGGTGLGLSICKRLVQLMNGEIGVSSRPGEGATFWFSLPFQRQRQ 685



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 16/136 (11%), Positives = 42/136 (30%), Gaps = 5/136 (3%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D    +  ++    +  G  A +++G  L D          + +   +++  +   +   
Sbjct: 339 DKDAKVIYVNPAFEQLFGWTAEEVLGKPL-DFVPSEERPKTDELIARMRKGESVLEEIKR 397

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
           +  +G  LY+    +A   + ++R F G     I              ++  K     + 
Sbjct: 398 YTKDGRLLYIR--ASASMFWDKDRHFLGT--VVISRDITDRKKAEEALRKAKKDAETANI 453

Query: 210 IKKGHSSVEKEKYDIF 225
            K    +    +    
Sbjct: 454 AKSQFVANMSHEIRTP 469



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 26/248 (10%), Positives = 66/248 (26%), Gaps = 11/248 (4%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR---QNTWYGK 146
            +   +K  +       G    ++ G               N +   LKR   + + YG+
Sbjct: 213 GSDKRIKFANPAWASMHGLTQKEVEGAHAR--IFHSTAQYENEVAPFLKRVASKGSNYGE 270

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                 +GT       ++   I     + +G     +           A     +++   
Sbjct: 271 MGHVRKDGTEFPCW--MSISLIRGEGEDPTGV--VAVAKDISERKAAEAALIASEERNRA 326

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
           L E      +V  +   +         L      +V      +   ++  KT++      
Sbjct: 327 LLEATPDAVTVYDKDAKVIYVNPAFEQLFGWTAEEVLGKPLDFVPSEERPKTDELIARMR 386

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
           +  S+ E+   +T +      +       +  +     +      +     +E      +
Sbjct: 387 KGESVLEEIKRYTKDGRLLYIRASASMFWDKDRHFLGTVVISRDITDRKKAEEALRKAKK 446

Query: 325 TVDKCPIP 332
             +   I 
Sbjct: 447 DAETANIA 454


>gi|296121939|ref|YP_003629717.1| PAS sensor protein [Planctomyces limnophilus DSM 3776]
 gi|296014279|gb|ADG67518.1| PAS sensor protein [Planctomyces limnophilus DSM 3776]
          Length = 823

 Score =  412 bits (1059), Expect = e-112,   Method: Composition-based stats.
 Identities = 131/583 (22%), Positives = 238/583 (40%), Gaps = 48/583 (8%)

Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330
           E  D +  N +     +      +       +        L   +   E      +D   
Sbjct: 91  EHNDSNGSNRSFEVHHRVAQLGTSRLCHLLSFRDISIIRQLEGAYKRSEARHQALLDSAV 150

Query: 331 IP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389
                + + G +   NP+   L  + S + + +   ++ L+ +P   +++      L   
Sbjct: 151 DAIVIINTRGAIKAFNPAAERLFGFSSDEVLGLN--VNMLMPSPYQQEHDNYLKRYLETK 208

Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449
           +R  I     +   + +                   E     G   +   ++  +  +  
Sbjct: 209 ERRVIGIGREVIGKRKDG---TVFPMNLSISEVTDGEERLFVGTVRDITHSKRTEEALRD 265

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
              ++ +IL    D I  I+  G+I S N A  K+FGY   +++ +   + +        
Sbjct: 266 SEARVRAILGTAVDAIITIDESGLIKSLNSAAQKMFGYSHHEMIGENVRMLMPDPYRGEH 325

Query: 510 NHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWK 565
           + YL +      R+ +   +  +G  ++     + + + ++   S   ++  + DI+E K
Sbjct: 326 DGYLQKYQQTGTRRVIGIGREAVGRRRDGSTFPMELSVSEVRQGSRRYFTGIVRDITERK 385

Query: 566 QEKNKLSHA----------------------------KKIAEKESSHKSDFLARVSHEIR 597
           + + +L  +                            +K AE  +  KSDFLA +SHEIR
Sbjct: 386 RYEARLRESIEESSRSQARLKIQAEELAQQATSLSEARKSAEAANRAKSDFLANMSHEIR 445

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TP+TAI+GF+E    Q    L  P   E  + I R+G  +L ++ND+LDISKIESG   +
Sbjct: 446 TPMTAILGFAE----QVSASLNRPEDCEALSIIRRNGEHLLKLINDILDISKIESGLFEI 501

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAI 716
                 L   + + +  +   A +K+I +  +FA N+P  I  D+  +KQ  +N+LSNA+
Sbjct: 502 EKTTCDLRVLIHDLMQSIGPKAAQKKIGLTVNFATNVPVCIETDVLRLKQSLMNLLSNAV 561

Query: 717 HFTPSGGQIIISTTHTSN----EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
            FT  GG + +S   T        + +++ DTG+G+    L+K   PF Q   S   R  
Sbjct: 562 KFTEQGG-VDLSVRMTEEFTTAPRIQMQICDTGIGIAAEHLDKLFIPFSQADTSVSRRFG 620

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
           GTGLGL ++K +++   G   + S    G+   I  P    SH
Sbjct: 621 GTGLGLAISKRLIELMGGDLQVKSILGSGSSFTITLPTGKISH 663



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 25/370 (6%), Positives = 80/370 (21%), Gaps = 19/370 (5%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEG 154
           +   +    + +     ++ G RLC++ +                      +  +   + 
Sbjct: 36  VIYANFAYEEMMSCQQAEITGKRLCEIHEGCWNRSALLSSLQNTCHGDRLEQIIVEHNDS 95

Query: 155 TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214
                  ++                 F       +        KR + +   L +     
Sbjct: 96  NGSNRSFEVHHRVAQLGTSRLCHLLSF---RDISIIRQLEGAYKRSEARHQALLDSAVDA 152

Query: 215 SSVEKEKYDIFSQQSPPPHL--RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES----- 267
             +   +  I +       L     ++V  L           +     L    E+     
Sbjct: 153 IVIINTRGAIKAFNPAAERLFGFSSDEVLGLNVNMLMPSPYQQEHDNYLKRYLETKERRV 212

Query: 268 -SLPEQEDFHTINLNQYTKKQYFGTLQN--NSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
             +  +      +   +        + +              +         + E     
Sbjct: 213 IGIGREVIGKRKDGTVFPMNLSISEVTDGEERLFVGTVRDITHSKRTEEALRDSEARVRA 272

Query: 325 TVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
            +         +   G +   N +   +  Y   + I     +  L+  P   +++    
Sbjct: 273 ILGTAVDAIITIDESGLIKSLNSAAQKMFGYSHHEMIGEN--VRMLMPDPYRGEHDGYLQ 330

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
                  R  I         + +                +        GI  +  + +  
Sbjct: 331 KYQQTGTRRVIGIGREAVGRRRDGSTFPM---ELSVSEVRQGSRRYFTGIVRDITERKRY 387

Query: 444 KRKMEIEVMQ 453
           + ++   + +
Sbjct: 388 EARLRESIEE 397



 Score = 55.4 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/248 (9%), Positives = 66/248 (26%), Gaps = 19/248 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD-ILHIDPNNHIGDLLKRQNTWY--- 144
           I+  G +K  +    +  G  + +++G+ +  +       + +N++   L+ +       
Sbjct: 156 INTRGAIKAFNPAAERLFGFSSDEVLGLNVNMLMPSPYQQEHDNYLKRYLETKERRVIGI 215

Query: 145 -GKTTLWPIEGTNLYVPIDLAALPIYS-RNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
             +      +GT    P++L+   +     R F G      V             +  + 
Sbjct: 216 GREVIGKRKDGT--VFPMNLSISEVTDGEERLFVG-----TVRDITHSKRTEEALRDSEA 268

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPP------PHLRMKNKVSSLTEYYAHKDDVLKT 256
           +   +            E   I S  S         H  M  +   +     ++ +    
Sbjct: 269 RVRAILGTAVDAIITIDESGLIKSLNSAAQKMFGYSHHEMIGENVRMLMPDPYRGEHDGY 328

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
            +    T     +    +      +  T        +        +       +    ++
Sbjct: 329 LQKYQQTGTRRVIGIGREAVGRRRDGSTFPMELSVSEVRQGSRRYFTGIVRDITERKRYE 388

Query: 317 EGENLTPE 324
                + E
Sbjct: 389 ARLRESIE 396



 Score = 50.8 bits (120), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 26/213 (12%), Positives = 68/213 (31%), Gaps = 16/213 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY---- 144
           ID  G +K ++    K  G    +MIG  +  +    +   ++      ++  T      
Sbjct: 284 IDESGLIKSLNSAAQKMFGYSHHEMIGENVRMLMPDPYRGEHDGYLQKYQQTGTRRVIGI 343

Query: 145 -GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL-DK 202
             +      +G+    P++L+   +   +R +      GIV          A  +   ++
Sbjct: 344 GREAVGRRRDGSTF--PMELSVSEVRQGSRRYFT----GIVRDITERKRYEARLRESIEE 397

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQ-SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
                  +K     + ++   +   + S     R K+   +   +               
Sbjct: 398 SSRSQARLKIQAEELAQQATSLSEARKSAEAANRAKSDFLANMSHEIRTPMTAILGFAEQ 457

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294
           ++   +SL   ED   +++ +   +     + +
Sbjct: 458 VS---ASLNRPEDCEALSIIRRNGEHLLKLIND 487



 Score = 39.2 bits (90), Expect = 3.0,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 42/126 (33%), Gaps = 3/126 (2%)

Query: 458 LEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT-PSVMNHYLTE 515
           L+A      ++   E  ++  N A  ++      +I  K      E     S +   L  
Sbjct: 19  LQAIGHATLLVGSNEWDVIYANFAYEEMMSCQQAEITGKRLCEIHEGCWNRSALLSSLQN 78

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-CYSLTMHDISEWKQEKNKLSHA 574
               D  + +      S    +   +   + +L  S  C+ L+  DIS  +Q +     +
Sbjct: 79  TCHGDRLEQIIVEHNDSNGSNRSFEVHHRVAQLGTSRLCHLLSFRDISIIRQLEGAYKRS 138

Query: 575 KKIAEK 580
           +   + 
Sbjct: 139 EARHQA 144


>gi|126175702|ref|YP_001051851.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS155]
 gi|125998907|gb|ABN62982.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS155]
          Length = 1784

 Score =  412 bits (1059), Expect = e-112,   Method: Composition-based stats.
 Identities = 123/756 (16%), Positives = 261/756 (34%), Gaps = 50/756 (6%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY---- 144
            +D  G +   +    +  G     M+G+++  +    + + +        R+        
Sbjct: 531  VDELGQIVFTNSRCLQLFGYETGAMLGLQVEALLPQEYGERHVLERQTFLREGRDRSMAN 590

Query: 145  -GKTTLWPIEGTNLYVPIDLAALPI-YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
                     +G      I L+ LP  +   R+ +       +             +  ++
Sbjct: 591  ARHVRALKADGNEFIAEIALSILPTAFDGQRQVA-----ASIRDMTQKLAVEQKIRDSEQ 645

Query: 203  KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS---------LTEYYAHKDDV 253
            +F  L     G     +     F +        +    +S                +D  
Sbjct: 646  RFRGLVTNIPGAVYRTRIGDVWFMEYISDNIAEITGYAASQFIENRQRTFASLILEEDRP 705

Query: 254  LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
                      +++ +   +      + +     +              +    +  + S 
Sbjct: 706  TCHLHIDRALAQQETFEVEYRIRHRDGSIRWVHEKGKASYTEEGIPLWFDGSIDDITESK 765

Query: 314  YF----DEGENLTPETVDKCPIPFFVYS-----HGNLFYANPSFLLLTKYKSVDDIEIAG 364
                  ++         +  P   +             + + + + +      D +    
Sbjct: 766  LALVQLEQSRQQMTNITESIPCTVYQLQWHSPIDRRFTFLSGAAMKMLGLHRDDLMSNFD 825

Query: 365  GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
             ++  +   +  D      V              R    +    +   M         + 
Sbjct: 826  IIAERIFDEERPD-----VVRALSGQSEDRLQWIREFRYRHPNGSIRWMEAGASGHLGEE 880

Query: 425  PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
               +  NG   +    +  ++++ +      ++ +  + GI  ++ +G+IL  N      
Sbjct: 881  G-AITWNGYVMDITQRKTIEQELALSEAHFKALFDGATIGIVNVDIKGVILDCNDQFCAD 939

Query: 485  FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
                   +        L +    +      E++   +                 L + + 
Sbjct: 940  MALSRNHLRNTAIFEVLSEQDQPIAKAQFQELVEGKIDH-YRGERSFIRPSGAPLWMTVN 998

Query: 545  IKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
            +  L  +        ++M D++E K   ++L  AK+ A+  S  K DFLA +SHEIRTP+
Sbjct: 999  VSALLDAQGQFESAVISMVDMTELKLLSDELLLAKEQADAASKAKGDFLANMSHEIRTPM 1058

Query: 601  TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
             AIIG S++          + +   Y   I+R+   +L I+ND+LD SKIE+GK+++   
Sbjct: 1059 NAIIGMSQLCLQTEL----DKKQKNYVEKIERASQSLLSIINDILDFSKIEAGKLDIDSV 1114

Query: 661  PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFT 719
            P  LD  + +   +    A  K+I +  + A N+PR +L D   + Q+ +N+++NAI FT
Sbjct: 1115 PFQLDTMLEDLSDMFSEKAAHKQIELLFAVAPNVPRYLLGDSLRLGQVLINLMNNAIKFT 1174

Query: 720  PSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
              G ++++S +    ++    +   VRD+G+G+T  +  K  K F Q   S   +  GTG
Sbjct: 1175 ERG-EVLLSLSLVEQQDDDVVLRFSVRDSGIGLTEQQQAKLFKSFTQADTSTTRKYGGTG 1233

Query: 776  LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
            LGL + K +V+   GK  + S    G+       L+
Sbjct: 1234 LGLAICKQLVELMGGKIGVESQFGHGSTFYFTVKLH 1269



 Score =  115 bits (287), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 57/584 (9%), Positives = 160/584 (27%), Gaps = 58/584 (9%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNT 142
           F  ++D  G L ++SE + K +G     ++  +   +     ++  N       LK QN 
Sbjct: 408 FYCSLDPDGQLAQVSEGVTKVLGISPD-LLKRKYQRLFSANPLNEKNWQYTDFALKGQNV 466

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA---LGKR 199
              +  +   +G    + + +   P+ S   E        +                   
Sbjct: 467 PSHQVEMLDDQGHLRRLDVFM--QPLMSDTGELMSVE--MLFTDVTEQFSAAVWSNAVLE 522

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
              +   + +              +F  ++          +        H  +     + 
Sbjct: 523 AAPEAMLIVDELGQIVFTNSRCLQLFGYETGAMLGLQVEALLPQEYGERHVLERQTFLRE 582

Query: 260 PLLTSEESSLPEQEDFHTINL--NQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
               S  ++   +      N    +              + +          ++     +
Sbjct: 583 GRDRSMANARHVRALKADGNEFIAEIALSILPTAFDGQRQVAASIRDMTQKLAVEQKIRD 642

Query: 318 GENLTPETVDKCPIPFFVYSHGNL---FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
            E      V   P   +    G++    Y + +   +T Y +   IE          +  
Sbjct: 643 SEQRFRGLVTNIPGAVYRTRIGDVWFMEYISDNIAEITGYAASQFIENRQ---RTFASLI 699

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
           L ++     + + R+           + I+    +   +         +    +  +G  
Sbjct: 700 LEEDRPTCHLHIDRALAQQETFEVE-YRIRHRDGSIRWVHEKGKASYTEEGIPLWFDGSI 758

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN----REGIILSTNRAVSKLFGYPVE 490
            +  ++++   ++E    Q+ +I E+    +  +      +      + A  K+ G   +
Sbjct: 759 DDITESKLALVQLEQSRQQMTNITESIPCTVYQLQWHSPIDRRFTFLSGAAMKMLGLHRD 818

Query: 491 DIL--RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
           D++         +       +   L+      L+    +          +  +       
Sbjct: 819 DLMSNFDIIAERIFDEERPDVVRALSGQSEDRLQWI--REFRYRHPNGSIRWMEAGASGH 876

Query: 549 PFSSCYS---LTMHDISEWKQEKNKLSHAKKIAEKESSHKS-----------------DF 588
                       + DI++ K  + +L+ ++   +      +                  F
Sbjct: 877 LGEEGAITWNGYVMDITQRKTIEQELALSEAHFKALFDGATIGIVNVDIKGVILDCNDQF 936

Query: 589 LARVS----HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
            A ++    H +R   TAI      + +++  P+   ++ E   
Sbjct: 937 CADMALSRNH-LRN--TAIF----EVLSEQDQPIAKAQFQELVE 973



 Score = 74.3 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 41/352 (11%), Positives = 96/352 (27%), Gaps = 23/352 (6%)

Query: 235 RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294
            M + + +L+                L    E        F      Q    +   +   
Sbjct: 309 DMASIILNLSLLTLLLLLTCYLAAKRLTRPLELLESGILSFGQGKTQQLIVPKGAVSEIV 368

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF---VYSHGNLFYANPSFLLL 351
               +F  ++        A  D   N     +D      F   +   G L   +     +
Sbjct: 369 TLSNTFNQMAELLAEREQAILDSRGNRFARLIDGMSDKSFYCSLDPDGQLAQVSEGVTKV 428

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411
                 D ++       L  A  L++ N        +         +    +  ++ +  
Sbjct: 429 LGISP-DLLKRKYQ--RLFSANPLNEKNWQYTDFALKGQ----NVPSHQVEMLDDQGHLR 481

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471
            +        +   E M    +  +  +                ++LEA  + + I++  
Sbjct: 482 RLDVFMQPLMSDTGELMSVEMLFTDVTEQFSAAVWS-------NAVLEAAPEAMLIVDEL 534

Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL--EKIT 529
           G I+ TN    +LFGY    +L       L Q             L     +++   +  
Sbjct: 535 GQIVFTNSRCLQLFGYETGAMLGLQVEALLPQEYGERHVLERQTFLREGRDRSMANARHV 594

Query: 530 LGSTKEEKLL----SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI 577
                +        +L I+          + ++ D+++    + K+  +++ 
Sbjct: 595 RALKADGNEFIAEIALSILPTAFDGQRQVAASIRDMTQKLAVEQKIRDSEQR 646


>gi|160873991|ref|YP_001553307.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS195]
 gi|160859513|gb|ABX48047.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS195]
 gi|315266220|gb|ADT93073.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS678]
          Length = 1786

 Score =  412 bits (1059), Expect = e-112,   Method: Composition-based stats.
 Identities = 123/756 (16%), Positives = 263/756 (34%), Gaps = 50/756 (6%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLC-----DVSDILHIDPNNHIGDLLKRQNTW 143
            +D  G +   +    +  G     M+G+++      ++ +   ++    + +   R    
Sbjct: 531  VDELGQIVFTNSRCLQLFGYETGAMLGLQVEALLPQELGERHVLERQTFLREGRDRSMVN 590

Query: 144  YGKTTLWPIEGTNLYVPIDLAALPI-YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
                     +G      I L+ LP  +   R+ +       +             +  ++
Sbjct: 591  ARHVRALKADGNEFIAEIALSILPTAFDGQRQVA-----ASIRDMTQKLAVEQKIRDSEQ 645

Query: 203  KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS---------LTEYYAHKDDV 253
            +F  L     G     +     F +        +    +S                +D  
Sbjct: 646  RFRGLVTNIPGAVYRTRIGDVWFMEYISDNIAEITGYAASQFIENRQRTFASLILEEDRP 705

Query: 254  LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
                      +++ +   +      + +     +              +    +  + S 
Sbjct: 706  TCHLHIDRALAQQETFEVEYRIRHRDGSIRWVHEKGKASYTEEGIPLWFDGSIDDITESK 765

Query: 314  YF----DEGENLTPETVDKCPIPFFVYS-----HGNLFYANPSFLLLTKYKSVDDIEIAG 364
                  ++         +  P   +             + + + + +      D +    
Sbjct: 766  LALVQLEQSRQQMTNITESIPCTVYQLQWHSPTDRRFTFLSGAAMKMLGLHRDDLMSNFD 825

Query: 365  GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
             ++  +   +  D      V              R    +    +   M         + 
Sbjct: 826  IIAERIFDEERPD-----VVRALSGQSEDRLQWIREFRYRHPNGSIRWMEAGASGHLGEE 880

Query: 425  PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
               +  NG   +    +  ++++ +      ++ +  + GI  ++ +G+IL  N      
Sbjct: 881  G-GITWNGYVMDITQRKTIEQELALSEAHFKALFDGATIGIVNVDIKGVILDCNDQFCAD 939

Query: 485  FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
                   +        L +    +      E++   +                 L + + 
Sbjct: 940  MALSRNHLRNTAIFEVLSEQDQPIAKAQFQELVEGKIDH-YRGERSFIRPSGAPLWMTVN 998

Query: 545  IKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
            +  L  +        ++M D++E K   ++L  AK+ A+  S  K DFLA +SHEIRTP+
Sbjct: 999  VSALLDAQGQFESAVISMVDMTELKLLSDELLLAKEQADAASKAKGDFLANMSHEIRTPM 1058

Query: 601  TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
             AIIG S++          + +   Y   I+R+   +L I+ND+LD SKIE+GK+++   
Sbjct: 1059 NAIIGMSQLCLQTEL----DKKQKNYVEKIERASQSLLSIINDILDFSKIEAGKLDIDSV 1114

Query: 661  PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFT 719
            P  LD  + +   +    A  K+I +  + A N+PR +L D   + Q+ +N+++NAI FT
Sbjct: 1115 PFQLDTMLEDLSDMFSEKAAHKQIELLFAVAPNVPRYLLGDSLRLGQVLINLMNNAIKFT 1174

Query: 720  PSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
              G ++++S +    ++    +   VRD+G+G+T  +  K  K F Q   S   +  GTG
Sbjct: 1175 ERG-EVLLSLSLVEQQDDDVVLRFSVRDSGIGLTEQQQAKLFKSFTQADTSTTRKYGGTG 1233

Query: 776  LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
            LGL + K +V+   GK  + S    G+       L+
Sbjct: 1234 LGLAICKQLVELMGGKIGVESQFGHGSTFYFTVKLH 1269



 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 58/584 (9%), Positives = 162/584 (27%), Gaps = 58/584 (9%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNT 142
           F  ++D  G L ++SE + K +G     ++  +   +     ++  N       LK QN 
Sbjct: 408 FYCSLDPDGQLAQVSEGVTKVLGISPD-LLKRKYQRLFSANPLNEKNWQYTDLALKGQNV 466

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA---LGKR 199
              +  +   +G    + + +   P+ S   E        +                   
Sbjct: 467 PSHQVEMLDDQGHLRRLDVFM--QPLMSDTNELMSVE--MLFTDVTEQFSAAVWSNAVLE 522

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
              +   + +              +F  ++          +        H  +     + 
Sbjct: 523 AAPEAMLIVDELGQIVFTNSRCLQLFGYETGAMLGLQVEALLPQELGERHVLERQTFLRE 582

Query: 260 PLLTSEESSLPEQEDFHTINL--NQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
               S  ++   +      N    +              + +          ++     +
Sbjct: 583 GRDRSMVNARHVRALKADGNEFIAEIALSILPTAFDGQRQVAASIRDMTQKLAVEQKIRD 642

Query: 318 GENLTPETVDKCPIPFFVYSHGNL---FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
            E      V   P   +    G++    Y + +   +T Y +   IE          +  
Sbjct: 643 SEQRFRGLVTNIPGAVYRTRIGDVWFMEYISDNIAEITGYAASQFIENRQ---RTFASLI 699

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
           L ++     + + R+           + I+    +   +         +    +  +G  
Sbjct: 700 LEEDRPTCHLHIDRALAQQETFEVE-YRIRHRDGSIRWVHEKGKASYTEEGIPLWFDGSI 758

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN----REGIILSTNRAVSKLFGYPVE 490
            +  ++++   ++E    Q+ +I E+    +  +      +      + A  K+ G   +
Sbjct: 759 DDITESKLALVQLEQSRQQMTNITESIPCTVYQLQWHSPTDRRFTFLSGAAMKMLGLHRD 818

Query: 491 DIL--RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI-IIKK 547
           D++         +       +   L+      L+    +          +  +       
Sbjct: 819 DLMSNFDIIAERIFDEERPDVVRALSGQSEDRLQWI--REFRYRHPNGSIRWMEAGASGH 876

Query: 548 LPFSSCYS--LTMHDISEWKQEKNKLSHAKKIAEKESSHKS-----------------DF 588
           L      +    + DI++ K  + +L+ ++   +      +                  F
Sbjct: 877 LGEEGGITWNGYVMDITQRKTIEQELALSEAHFKALFDGATIGIVNVDIKGVILDCNDQF 936

Query: 589 LARVS----HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
            A ++    H +R   TAI      + +++  P+   ++ E   
Sbjct: 937 CADMALSRNH-LRN--TAIF----EVLSEQDQPIAKAQFQELVE 973



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/352 (11%), Positives = 98/352 (27%), Gaps = 23/352 (6%)

Query: 235 RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294
            M + + +L+                L    E        F      Q    +   +   
Sbjct: 309 DMASIILNLSLLTLLLLLTCYLAAKRLTRPLELLESGILSFGQGKTQQLIVPKGAVSEIV 368

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF---VYSHGNLFYANPSFLLL 351
               +F  ++        A  D   N     +D      F   +   G L   +     +
Sbjct: 369 TLSNTFNQMAELLAEREQAILDSRGNRFARLIDGMSDKSFYCSLDPDGQLAQVSEGVTKV 428

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411
                 D ++       L  A  L++ N     +  +         +    +  ++ +  
Sbjct: 429 LGISP-DLLKRKYQ--RLFSANPLNEKNWQYTDLALKGQ----NVPSHQVEMLDDQGHLR 481

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471
            +        +   E M    +  +  +                ++LEA  + + I++  
Sbjct: 482 RLDVFMQPLMSDTNELMSVEMLFTDVTEQFSAAVWS-------NAVLEAAPEAMLIVDEL 534

Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN-TPSVMNHYLTEILSLDLRQTLE-KIT 529
           G I+ TN    +LFGY    +L       L Q      +    T +     R  +  +  
Sbjct: 535 GQIVFTNSRCLQLFGYETGAMLGLQVEALLPQELGERHVLERQTFLREGRDRSMVNARHV 594

Query: 530 LGSTKEEKLL----SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI 577
                +        +L I+          + ++ D+++    + K+  +++ 
Sbjct: 595 RALKADGNEFIAEIALSILPTAFDGQRQVAASIRDMTQKLAVEQKIRDSEQR 646


>gi|20092217|ref|NP_618292.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
 gi|19917449|gb|AAM06772.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
          Length = 761

 Score =  412 bits (1058), Expect = e-112,   Method: Composition-based stats.
 Identities = 142/624 (22%), Positives = 260/624 (41%), Gaps = 21/624 (3%)

Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254
              +  + ++  L       + +      + +  + P         + +T        + 
Sbjct: 137 EALQESENRYKQLFNNSPAVTLLIDPVDYLIADANEPACAYYGYTYAEMTAKKITDISIY 196

Query: 255 KTEKYPLLTSE---ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF--EYLSHRNHP 309
             E+   ++ +   E            +      + Y  T+    +E F           
Sbjct: 197 SRERNRKISQQVFSEKKGHFYSCHKLASGEIRHVEMYINTINIRGRELFFTNVYDVTASK 256

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
            +     E E    + V+       +  + G +   N +   +  Y   + +E       
Sbjct: 257 KIERELTESEEKFKQVVELSIDGIIIGANSGKIVDCNEAACRIFGYGKEEMLE------- 309

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI--QWNRENSLAMTFIPFEKANQFPE 426
            L+   +   + ++ +    +    ++ +  + +I  + +       T     +  +  +
Sbjct: 310 -LNVDNILREDFMQSIPEIITTGKAVSENKTIESINKRKDG---TFFTAEIATRTFKLGD 365

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
                    +  + +  +R ++       +++  T DGI I+N EG +++ N AV K+F 
Sbjct: 366 EDRLIVYVRDITERKKAERDLKSSEENFRALVNNTLDGIIILNFEGEVIAANAAVGKMFN 425

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
             +E I       +L   +  V       +L+           + S  E   +       
Sbjct: 426 VELEKITGTNIAKYLAPESVPVAIRDQINVLNNQGGYLSVYKAISSMGEHFWIEGLGTKI 485

Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
                    + + DI+  K+ +  L +AK  AE  +  KS+FL  +SHE++TPL +IIGF
Sbjct: 486 IYQNQPANIVVIRDITVRKKAEEALINAKTAAEVANRTKSEFLTNMSHELKTPLNSIIGF 545

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
           S+++K +  GPL N +   Y  +I  SG  +L+I+ND+LD+SK ESG+ +L+ E  S+DE
Sbjct: 546 SDLLKEEIAGPL-NEKQSRYVQFISSSGKNLLEIINDILDLSKAESGEEDLNVEKFSVDE 604

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726
           ++++ IS+V   A EK I++     N    I AD    +QI  N+LSNAI FTP+GG I 
Sbjct: 605 SINKVISVVLPQAQEKNIILNYQSENRTLWITADEGKFRQIMENLLSNAIKFTPAGGSID 664

Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
           ++        V + V+DTG+G+     EK  KPF QI +S     EGTGLGL L K  V+
Sbjct: 665 VTLK-QEGLLVTIEVKDTGIGIPEDSFEKIFKPFIQIDSSLSRNFEGTGLGLTLVKKYVE 723

Query: 787 ANMGKFYIFSTPAKGTLIEIIFPL 810
            + G  Y+ S   +G+      P+
Sbjct: 724 MHGGNIYVESKIGEGSSFRFELPV 747



 Score = 46.6 bits (109), Expect = 0.020,   Method: Composition-based stats.
 Identities = 13/144 (9%), Positives = 38/144 (26%), Gaps = 13/144 (9%)

Query: 93  GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG----KTT 148
           G + + +E   +  G    +M+ + + ++     +     I   +            ++ 
Sbjct: 287 GKIVDCNEAACRIFGYGKEEMLELNVDNILREDFMQSIPEI---ITTGKAVSENKTIESI 343

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +GT     I      +   +R          V             K  ++ F  L 
Sbjct: 344 NKRKDGTFFTAEIATRTFKLGDEDRLIV------YVRDITERKKAERDLKSSEENFRALV 397

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPP 232
                   +   + ++ +  +   
Sbjct: 398 NNTLDGIIILNFEGEVIAANAAVG 421


>gi|309790923|ref|ZP_07685465.1| two-component hybrid sensor and regulator [Oscillochloris
           trichoides DG6]
 gi|308227037|gb|EFO80723.1| two-component hybrid sensor and regulator [Oscillochloris
           trichoides DG6]
          Length = 1010

 Score =  412 bits (1058), Expect = e-112,   Method: Composition-based stats.
 Identities = 145/787 (18%), Positives = 299/787 (37%), Gaps = 77/787 (9%)

Query: 93  GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPI 152
           G + E ++   +  G    ++  M + D++    + P     +  K              
Sbjct: 100 GQIVEANKAATRFYGYSKEQLRSMCIQDINT---LSPEQVAAERQKAMRELRSHFIFPHR 156

Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRAL---GKRLDKKFSHLHE 209
                   +++ + PI  R +       F I++     N    L    + L +  S +  
Sbjct: 157 RADGSQRTVEVHSSPIRFREQNVL----FSIIYDITERNQTEELVYAQRDLARITSSVTA 212

Query: 210 IKKGHSSVEKEKYDIFSQQS--------------------------------PPPHLRMK 237
           + +      +    I    S                                     R++
Sbjct: 213 LDEALPLCLQIALRISGMDSGGFYFFDHSYTIIKLAYHTGLSENCAQAIAYYSVGSPRIQ 272

Query: 238 NKVSSLTEYYAHKDDVLK--TEKYPLLTSEESSLPEQEDF--------HTINLNQYTKKQ 287
           +    L  YY   D+ +   ++   L +     +P  E F        H++N      + 
Sbjct: 273 DIPLDLPSYYTITDNPIYHISQIEGLRSFAIIPIPIHEGFLGYIFVASHSLNDITSFSRH 332

Query: 288 YFGTLQNNSKESFEYLSHRNH------------PSLSAYFDEGENLTPETVDKCPIPFF- 334
               + +       +L  +               +L    ++      +  +  P+ +  
Sbjct: 333 ALEAIASEIGNVIIHLRTKESLEHNQHILHELNQTLEDRVEQRTMEVQDLYENAPVGYHS 392

Query: 335 VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394
           + + G L   N + L    Y   D +        +L    + D   I P+   +   +  
Sbjct: 393 LDAEGLLIVLNQTQLNWLGYTREDLLGRPFI--EILSPRSIPDFEHIFPLF--KQQGSVR 448

Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
                +   +      + +        ++    +       ++ + +  +  +     + 
Sbjct: 449 DLEFEM---RKKNGTLMPVLISATAVYDECGNYLMSRSTVFDNTERKKAELALRETEERT 505

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK---PFTVFLEQNTPSVMNH 511
             ++E++ D I + + +G ++  NRA  ++ GY    +L +      + +   T  +   
Sbjct: 506 RLLIESSPDAIVLFSEQGEVVQLNRAFEQMTGYTSAQMLGRTPEHIGLIMPDMTWDLALM 565

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571
              ++       T++     +  E   +++R+    L     Y  T+ D++  K  + KL
Sbjct: 566 VSHDLAEHHYFTTIDLQIQRANGEMLDVAMRVFGLTLQGQPHYLATLRDVTTEKHAEEKL 625

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
             A       +  K +FLA +SHE+RTPL AI+G SE +     GPL N R ++  + I+
Sbjct: 626 RQANVALAHAARTKDEFLASMSHELRTPLNAILGLSEALIEGVRGPL-NERQLDALHNIE 684

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
            SG  +L ++ND+LD+SK+E+G+++L  E VS+ E    ++  V+  A +K + +     
Sbjct: 685 ASGQHLLALINDILDLSKVEAGRLDLQIEAVSVAEVCQASLLFVKEQALKKSLRLSFHLD 744

Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-SNEEVILRVRDTGVGMTN 750
           + +  + AD R +KQ+ +N+LSNA+ FTP  G + +  T     E+++  V DTG+G+  
Sbjct: 745 DQMAEMDADPRRLKQMLVNLLSNAVKFTPPKGHVNLHVTIDLEAEQIVFVVEDTGIGIAQ 804

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            +L +  +PF Q+ +    + EGTGLGL L + + + + G   + S   KG+   I  P 
Sbjct: 805 DDLPRLFQPFKQLDSRLSRQHEGTGLGLALVRRLAEMHGGGVMVESELGKGSRFSIQLPY 864

Query: 811 YDTSHPH 817
                P+
Sbjct: 865 RQPEMPN 871



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 19/173 (10%), Positives = 47/173 (27%), Gaps = 7/173 (4%)

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469
              +  +                  P+           +    Q   + E     + +I 
Sbjct: 37  FWEIGLVGLSLILAIGAGWLIGQYSPQARRRHERDAATKASEQQFQLMFEEHGAIMLLIE 96

Query: 470 R-EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528
              G I+  N+A ++ +GY  E +           +   V       +  L        I
Sbjct: 97  PLSGQIVEANKAATRFYGYSKEQLRSMCIQDINTLSPEQVAAERQKAMRELRS----HFI 152

Query: 529 TLGSTKEE--KLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579
                 +   + + +     +    +     ++DI+E  Q +  +   + +A 
Sbjct: 153 FPHRRADGSQRTVEVHSSPIRFREQNVLFSIIYDITERNQTEELVYAQRDLAR 205



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/248 (11%), Positives = 62/248 (25%), Gaps = 12/248 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +DA G L  +++     +G     ++G    ++     I    HI  L K+Q +      
Sbjct: 393 LDAEGLLIVLNQTQLNWLGYTREDLLGRPFIEILSPRSIPDFEHIFPLFKQQGSVRDLEF 452

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +   L  P+ ++A  +Y     +   R    V  N          +  +++   L 
Sbjct: 453 EMRKKNGTLM-PVLISATAVYDECGNYLMSR--STVFDNTERKKAELALRETEERTRLLI 509

Query: 209 EIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYY----AHKDDVLKTEKYPL 261
           E       +  E+ ++                  +    E+           L       
Sbjct: 510 ESSPDAIVLFSEQGEVVQLNRAFEQMTGYTSAQMLGRTPEHIGLIMPDMTWDLALMVSHD 569

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
           L                N                 +    YL+     +   + +E    
Sbjct: 570 LAEHHYFTTIDLQIQRANGEML--DVAMRVFGLTLQGQPHYLATLRDVTTEKHAEEKLRQ 627

Query: 322 TPETVDKC 329
               +   
Sbjct: 628 ANVALAHA 635



 Score = 37.7 bits (86), Expect = 8.1,   Method: Composition-based stats.
 Identities = 12/138 (8%), Positives = 37/138 (26%), Gaps = 10/138 (7%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVS---DILHIDPNNHIGDLLKRQNTWYGKTT 148
            G + +++    +  G  + +M+G     +      +  D    +   L   + +     
Sbjct: 522 QGEVVQLNRAFEQMTGYTSAQMLGRTPEHIGLIMPDMTWDLALMVSHDLAEHHYFTTIDL 581

Query: 149 LW-PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                 G  L V + +  L +  +            +     +       ++ +   +H 
Sbjct: 582 QIQRANGEMLDVAMRVFGLTLQGQPHYL------ATLRDVTTEKHAEEKLRQANVALAHA 635

Query: 208 HEIKKGHSSVEKEKYDIF 225
              K    +    +    
Sbjct: 636 ARTKDEFLASMSHELRTP 653


>gi|94263692|ref|ZP_01287500.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
 gi|93455891|gb|EAT06050.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
          Length = 605

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 113/519 (21%), Positives = 226/519 (43%), Gaps = 19/519 (3%)

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGG 365
             P +     E E    +  +      +   + G   + +     +        +     
Sbjct: 4   TDPHILLKLTEAEQRFRDVTEAAGEYIWELDNNGLYTFVSKPIEAILGVPVEQALGRTP- 62

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
                D     +   +        +R         H    +  + +          +   
Sbjct: 63  ----FDFMPPEEAEWVGAWFTKLVERRE-PFRGLEHCSLKSDGSIVWQRVSGVPILDGAG 117

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
           E     G   +    ++ ++ +E    +L  IL+ T +G   ++ E  +LS N+A  ++F
Sbjct: 118 ELRGYRGAALDITQEKLARQALEEREKRLALILDNTVEGFITMDAERQVLSFNKAAERIF 177

Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRI 543
           GY  E++L +   + + +   S  + Y+   L+  +++ +   +   G  K  ++  L++
Sbjct: 178 GYEAEEVLGQNLKMLMPEPFHSQHDQYVENYLTSGVKKIIGTGREVQGRRKTGEVFPLQL 237

Query: 544 IIKK--LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
            + +  +     +  ++ DI+E K+++     AK+ AE  S  KS+FLA +SHE+RTP+ 
Sbjct: 238 AVSETLVGEERLFVGSIQDITERKRQEALQRQAKETAEAASRSKSEFLANMSHEMRTPMN 297

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
            IIG  ++       P   P+  +Y   I  S   +L ++ND LD++++E+GKM +   P
Sbjct: 298 VIIGLGQLALKSE--PPPPPKLHDYLEKITASATTLLVLINDTLDLARLETGKMAIDQVP 355

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTP 720
             L + +++   L+   A EK + +  + A  +P +++ D   + Q+ +N+ SNAI F+ 
Sbjct: 356 FDLSDILNKLEKLMGERAAEKGLQLVFAVAPTVPDQMVGDPHRLSQVLINLTSNAIKFSE 415

Query: 721 SGGQIIISTTHTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
            G ++ +S     +      + + VRDTG+G+   +LE   +PF Q   S   +  GTGL
Sbjct: 416 KG-EVSLSFEMADSTADTFTLRVTVRDTGIGIAPEQLETIFQPFTQADGSSTRKYGGTGL 474

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
           GL +A  +V+   GK  + S P +G+      PL  ++ 
Sbjct: 475 GLSIANRLVELMGGKLEVKSEPGQGSSFFFNCPLRRSAQ 513



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/253 (9%), Positives = 72/253 (28%), Gaps = 12/253 (4%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTW 143
           + W +D +G    +S+ +   +G    + +G    D       +        L++R+  +
Sbjct: 29  YIWELDNNGLYTFVSKPIEAILGVPVEQALGRTPFDFMPPEEAEWVGAWFTKLVERREPF 88

Query: 144 YGKTTL-WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
            G        +G+   V   ++ +PI     E  G+RG  +      +   R   +  +K
Sbjct: 89  RGLEHCSLKSDGSI--VWQRVSGVPILDGAGELRGYRGAAL--DITQEKLARQALEEREK 144

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL------RMKNKVSSLTEYYAHKDDVLKT 256
           + + + +           +  + S       +       +  +   +           + 
Sbjct: 145 RLALILDNTVEGFITMDAERQVLSFNKAAERIFGYEAEEVLGQNLKMLMPEPFHSQHDQY 204

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
            +  L +  +  +    +                  +    E   ++      +     +
Sbjct: 205 VENYLTSGVKKIIGTGREVQGRRKTGEVFPLQLAVSETLVGEERLFVGSIQDITERKRQE 264

Query: 317 EGENLTPETVDKC 329
             +    ET +  
Sbjct: 265 ALQRQAKETAEAA 277


>gi|304411121|ref|ZP_07392737.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183]
 gi|307301756|ref|ZP_07581514.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175]
 gi|304350656|gb|EFM15058.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183]
 gi|306913794|gb|EFN44215.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175]
          Length = 1784

 Score =  411 bits (1057), Expect = e-112,   Method: Composition-based stats.
 Identities = 123/756 (16%), Positives = 263/756 (34%), Gaps = 50/756 (6%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLC-----DVSDILHIDPNNHIGDLLKRQNTW 143
            +D  G +   +    +  G     M+G+++      ++ +   ++    + +   R    
Sbjct: 531  VDELGQIVFTNSRCLQLFGYETGAMLGLQVEALLPQELGERHVLERQTFLREGRDRSMAN 590

Query: 144  YGKTTLWPIEGTNLYVPIDLAALPI-YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
                     +G      I L+ LP  +   R+ +       +             +  ++
Sbjct: 591  ARHVRALKADGNEFIAEIALSILPTAFDGQRQVA-----ASIRDMTQKLAVEQKIRDSEQ 645

Query: 203  KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS---------LTEYYAHKDDV 253
            +F  L     G     +     F +        +    +S                +D  
Sbjct: 646  RFRGLVTNIPGAVYRTRIGDVWFMEYISDNIAEITGYAASQFIENRQRTFASLILEEDRP 705

Query: 254  LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
                      +++ +   +      + +     +              +    +  + S 
Sbjct: 706  TCHLHIDRALAQQETFEVEYRIRHRDGSIRWVHEKGKASYTEEGIPLWFDGSIDDITESK 765

Query: 314  YF----DEGENLTPETVDKCPIPFFVYS-----HGNLFYANPSFLLLTKYKSVDDIEIAG 364
                  ++         +  P   +             + + + + +      D +    
Sbjct: 766  LALVQLEQSRQQMTNITESIPCTVYQLQWHSPTDRRFTFLSGAAMKMLGLHRDDLMSNFD 825

Query: 365  GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
             ++  +   +  D      V              R    +    +   M         + 
Sbjct: 826  IIAERIFDEERPD-----VVRALSGQSEDRLQWIREFRYRHPNGSIRWMEAGASGHLGEE 880

Query: 425  PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
               +  NG   +    +  ++++ +      ++ +  + GI  ++ +G+IL  N      
Sbjct: 881  G-AITWNGYVMDITQRKTIEQELALSEAHFKALFDGATIGIVNVDIKGVILDCNDQFCAD 939

Query: 485  FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
                   +        L +    +      E++   +                 L + + 
Sbjct: 940  MALSRNHLRNTAIFEVLSEQDQPIAKAQFQELVEGKIDH-YRGERSFIRPSGAPLWMTVN 998

Query: 545  IKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
            +  L  +        ++M D++E K   ++L  AK+ A+  S  K DFLA +SHEIRTP+
Sbjct: 999  VSALLDAQGQFESAVISMVDMTELKLLSDELLLAKEQADAASKAKGDFLANMSHEIRTPM 1058

Query: 601  TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
             AIIG S++          + +   Y   I+R+   +L I+ND+LD SKIE+GK+++   
Sbjct: 1059 NAIIGMSQLCLQTEL----DKKQKNYVEKIERASQSLLSIINDILDFSKIEAGKLDIDSV 1114

Query: 661  PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFT 719
            P  LD  + +   +    A  K+I +  + A N+PR +L D   + Q+ +N+++NAI FT
Sbjct: 1115 PFQLDTMLEDLSDMFSEKAAHKQIELLFAVAPNVPRYLLGDSLRLGQVLINLMNNAIKFT 1174

Query: 720  PSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
              G ++++S +    ++    +   VRD+G+G+T  +  K  K F Q   S   +  GTG
Sbjct: 1175 ERG-EVLLSLSLVEQQDDDVVLRFSVRDSGIGLTEQQQAKLFKSFTQADTSTTRKYGGTG 1233

Query: 776  LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
            LGL + K +V+   GK  + S    G+       L+
Sbjct: 1234 LGLAICKQLVELMGGKIGVESQFGHGSTFYFTVKLH 1269



 Score =  116 bits (291), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 57/584 (9%), Positives = 160/584 (27%), Gaps = 58/584 (9%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNT 142
           F  ++D  G L ++SE + K +G     ++  +   +     ++  N       LK QN 
Sbjct: 408 FYCSLDPDGQLAQVSEGVTKVLGISPD-LLKRKYQRLFSANPLNEKNWQYTDLALKGQNV 466

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA---LGKR 199
              +  +   +G    + + +   P+ S   E        +                   
Sbjct: 467 PSHQVEMLDDQGHLRRLDVFM--QPLMSDTGELMSVE--MLFTDVTEQFSAAVWSNAVLE 522

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
              +   + +              +F  ++          +        H  +     + 
Sbjct: 523 AAPEAMLIVDELGQIVFTNSRCLQLFGYETGAMLGLQVEALLPQELGERHVLERQTFLRE 582

Query: 260 PLLTSEESSLPEQEDFHTINL--NQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
               S  ++   +      N    +              + +          ++     +
Sbjct: 583 GRDRSMANARHVRALKADGNEFIAEIALSILPTAFDGQRQVAASIRDMTQKLAVEQKIRD 642

Query: 318 GENLTPETVDKCPIPFFVYSHGNL---FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
            E      V   P   +    G++    Y + +   +T Y +   IE          +  
Sbjct: 643 SEQRFRGLVTNIPGAVYRTRIGDVWFMEYISDNIAEITGYAASQFIENRQ---RTFASLI 699

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
           L ++     + + R+           + I+    +   +         +    +  +G  
Sbjct: 700 LEEDRPTCHLHIDRALAQQETFEVE-YRIRHRDGSIRWVHEKGKASYTEEGIPLWFDGSI 758

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN----REGIILSTNRAVSKLFGYPVE 490
            +  ++++   ++E    Q+ +I E+    +  +      +      + A  K+ G   +
Sbjct: 759 DDITESKLALVQLEQSRQQMTNITESIPCTVYQLQWHSPTDRRFTFLSGAAMKMLGLHRD 818

Query: 491 DIL--RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
           D++         +       +   L+      L+    +          +  +       
Sbjct: 819 DLMSNFDIIAERIFDEERPDVVRALSGQSEDRLQWI--REFRYRHPNGSIRWMEAGASGH 876

Query: 549 PFSSCYS---LTMHDISEWKQEKNKLSHAKKIAEKESSHKS-----------------DF 588
                       + DI++ K  + +L+ ++   +      +                  F
Sbjct: 877 LGEEGAITWNGYVMDITQRKTIEQELALSEAHFKALFDGATIGIVNVDIKGVILDCNDQF 936

Query: 589 LARVS----HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
            A ++    H +R   TAI      + +++  P+   ++ E   
Sbjct: 937 CADMALSRNH-LRN--TAIF----EVLSEQDQPIAKAQFQELVE 973



 Score = 73.1 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/352 (11%), Positives = 97/352 (27%), Gaps = 23/352 (6%)

Query: 235 RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294
            + + + +L+                L    E        F      Q    +   +   
Sbjct: 309 DVASIILNLSLLTLLLLLTCYLAAKRLTRPLELLESGILSFGQGKTQQLIVPKGAVSEIV 368

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF---VYSHGNLFYANPSFLLL 351
               +F  ++        A  D   N     +D      F   +   G L   +     +
Sbjct: 369 TLSNTFNQMAELLAEREQAILDSRGNRFARLIDGMSDKSFYCSLDPDGQLAQVSEGVTKV 428

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411
                 D ++       L  A  L++ N     +  +         +    +  ++ +  
Sbjct: 429 LGISP-DLLKRKYQ--RLFSANPLNEKNWQYTDLALKGQ----NVPSHQVEMLDDQGHLR 481

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471
            +        +   E M    +  +  +                ++LEA  + + I++  
Sbjct: 482 RLDVFMQPLMSDTGELMSVEMLFTDVTEQFSAAVWS-------NAVLEAAPEAMLIVDEL 534

Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL--EKIT 529
           G I+ TN    +LFGY    +L       L Q             L     +++   +  
Sbjct: 535 GQIVFTNSRCLQLFGYETGAMLGLQVEALLPQELGERHVLERQTFLREGRDRSMANARHV 594

Query: 530 LGSTKEEKLL----SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI 577
                +        +L I+          + ++ D+++    + K+  +++ 
Sbjct: 595 RALKADGNEFIAEIALSILPTAFDGQRQVAASIRDMTQKLAVEQKIRDSEQR 646


>gi|86609102|ref|YP_477864.1| sensory box histidine kinase/response regulator [Synechococcus sp.
            JA-2-3B'a(2-13)]
 gi|86557644|gb|ABD02601.1| sensory box histidine kinase/response regulator [Synechococcus sp.
            JA-2-3B'a(2-13)]
          Length = 1442

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 130/728 (17%), Positives = 256/728 (35%), Gaps = 45/728 (6%)

Query: 109  YAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPI 168
             A + +G  L ++      +    +  + +   T   +   + IE        +   +P+
Sbjct: 360  PAERHLGRSLQEILPPALAEQ--RLFYVQQALATQTQQRYEYSIEVQGEVRYEEARIVPL 417

Query: 169  YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228
             S+           IV             K  ++    + E           +    S  
Sbjct: 418  NSQE-------VLAIVRDITEAKQAELALKAAEQVQRAILEAIPDLIFRLDSQGICLSFV 470

Query: 229  ---SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTK 285
                  P+      V    +     +   +   +        +    +    I      +
Sbjct: 471  WGGEVVPYSSPDTYVGRSLQELLPPELAERRLFFVQQAIATQTRQRYDQSIEIQGETRHE 530

Query: 286  KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV--YSHGNLFY 343
            +     L              +         E E       +   +   +     G +  
Sbjct: 531  EVRIVPLNPQEVVVIVRD-VTDRVRSQQAVQESEQKFRALFENAAVAILIRHAETGEILE 589

Query: 344  ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403
            AN   +    + S++++              L          L ++ +   A        
Sbjct: 590  ANSQAISAYGFSSLEELRAFDASEQSPYRRALRGGEFSLQSYLEQARQQGSA----RFEW 645

Query: 404  QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
             W R++   +    F +               +    +  + ++E              D
Sbjct: 646  HWQRQDGRVVWEDVFVQPLVLRGIPCWVFTAVDITARKSAEAELEQ-------FFSVALD 698

Query: 464  GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
             + I + +G     NRA     GY ++++  +PF  ++           + +++      
Sbjct: 699  LLCIADAQGYFRRLNRAWETTLGYSLQELQSRPFLEWVHPEDVPATQAAMQQLIEEKRLD 758

Query: 524  TLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
                         + +  R  +      S +     DI+  K  + ++  AK+ AE  S 
Sbjct: 759  HFVNRYRTQDGSYRFIEWRASL----AGSLFYAAGRDITVAKLAEEQMKAAKEAAEAASR 814

Query: 584  HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
             KS+FLA +SHEIRTP+ AI+G + ++ +       +P+  ++   I   G ++L+++ND
Sbjct: 815  AKSEFLATISHEIRTPINAILGMTSLLLDTSL----DPQQQDWVQTIRYGGEVLLNLIND 870

Query: 644  LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLR 702
            +LD SKIES K+ L   P SL + V E + L+   A  K + +      ++P  ++ D  
Sbjct: 871  ILDFSKIESQKLELEEIPFSLPQLVEELLDLMAAQAQSKDLELVAWVDPSLPPTLIGDPN 930

Query: 703  SVKQIALNILSNAIHFTPSGGQI-IISTTHTS--NEEVILRVRDTGVGMTNYELEKAMKP 759
             ++QI  N+LSNAI FTP G  +  +         + V ++VRDTG+G+   +L++  KP
Sbjct: 931  RLRQILANLLSNAIKFTPQGEVVVTVEAGERDPEKQWVNVQVRDTGIGIPPEKLDRLFKP 990

Query: 760  FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY-------D 812
            F Q+ +S   +  GTGLGL +++ +     G   + S P +G+      PL         
Sbjct: 991  FSQVDSSISRQFGGTGLGLAISQRLCQLMGGAIGVESQPGQGSTFRFRIPLKRPDQELLP 1050

Query: 813  TSHPHDCI 820
            T+ P  C+
Sbjct: 1051 TAAPDPCL 1058



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 46/407 (11%), Positives = 103/407 (25%), Gaps = 18/407 (4%)

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244
             +       AL   LD  +            +    +   + +        + ++    
Sbjct: 67  TPSPEARFRAALEASLDAIYLLEAVRDPVTREIRDFVFVDVNAKGEELISLQRRQIIGQR 126

Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ-YFGTLQNNSKESFEYL 303
                  +             E+ +P +E+F             +   +           
Sbjct: 127 LCELLPINRWGGFFEKYKRVVETGIPLEEEFPISGQPGLKASWIHHQVVPVGDGILITSR 186

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEI 362
                  +     E E+      +  P   F  S  G + +  PS       +   +  +
Sbjct: 187 DISERVKMERALQESESRYRALYEAIPDLIFELSAEGVILHCKPS--PYVPTRHPPEFYV 244

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
                 +          ++    L       +     +         +  +     +   
Sbjct: 245 GCRAQDVFTGSLKEQYPSLAEGALVSQTPQYLEYEVEIEPGIRCYRRACVVAHGRDKVY- 303

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
                     +  +  + +  +  +        +IL+A  D I  +NR+GI LS      
Sbjct: 304 ---------ILVRDITERKQAELALREMEATQRAILQAIPDLIVRLNRQGICLSFISGGD 354

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
                P E  L +     L          Y+ + L+   +Q  E        + ++    
Sbjct: 355 VHLDCPAERHLGRSLQEILPPALAEQRLFYVQQALATQTQQRYEYSIEV---QGEVRYEE 411

Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
             I  L         + DI+E KQ +  L  A+++         D +
Sbjct: 412 ARIVPLNSQE-VLAIVRDITEAKQAELALKAAEQVQRAILEAIPDLI 457



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/311 (10%), Positives = 70/311 (22%), Gaps = 17/311 (5%)

Query: 280 LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY-SH 338
                 +   G+L           +        A  +   +     ++    P       
Sbjct: 43  QPLSVFRGILGSLSRRFPFQPPRGTPSPEARFRAALEASLDAIY-LLEAVRDPVTREIRD 101

Query: 339 GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398
                 N     L        ++    +   L      +          R   T I    
Sbjct: 102 FVFVDVNAKGEELIS------LQRRQIIGQRLCELLPINRWGGFFEKYKRVVETGIPLEE 155

Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458
                      +  +        +             +  +    +R ++    +  ++ 
Sbjct: 156 EFPISGQPGLKASWIHHQVVPVGDG------ILITSRDISERVKMERALQESESRYRALY 209

Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
           EA  D I  ++ EG+IL    +      +P E  +          +            L 
Sbjct: 210 EAIPDLIFELSAEGVILHCKPSPYVPTRHPPEFYVGCRAQDVFTGSLKEQYPSLAEGALV 269

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578
               Q LE        E  +   R             + + DI+E KQ +  L   +   
Sbjct: 270 SQTPQYLEYEVEI---EPGIRCYRRACVVAHGRDKVYILVRDITERKQAELALREMEATQ 326

Query: 579 EKESSHKSDFL 589
                   D +
Sbjct: 327 RAILQAIPDLI 337



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/156 (14%), Positives = 48/156 (30%), Gaps = 15/156 (9%)

Query: 451 VMQLCSILEATSDGIAIIN----------REGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
             +  + LEA+ D I ++           R+ + +  N    +L       I+ +     
Sbjct: 71  EARFRAALEASLDAIYLLEAVRDPVTREIRDFVFVDVNAKGEELISLQRRQIIGQRLCEL 130

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK-EEKLLSLRIIIKKLPFSSCYSLTMH 559
           L  N           ++   +    E    G    +   +  +++           +T  
Sbjct: 131 LPINRWGGFFEKYKRVVETGIPLEEEFPISGQPGLKASWIHHQVVPV----GDGILITSR 186

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
           DISE  + +  L  ++           D +  +S E
Sbjct: 187 DISERVKMERALQESESRYRALYEAIPDLIFELSAE 222



 Score = 40.4 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 24/234 (10%), Positives = 55/234 (23%), Gaps = 9/234 (3%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           DA GY + ++     T+G    ++      +      +         L  +         
Sbjct: 704 DAQGYFRRLNRAWETTLGYSLQELQSRPFLEWVHPEDVPATQAAMQQLIEEKRLDHFVNR 763

Query: 150 WPIEGTNLY---VPIDLAALPIYSRNREFSGFR------GFGIVHVNRVDNDPRALGKRL 200
           +  +  +         LA    Y+  R+ +  +                          +
Sbjct: 764 YRTQDGSYRFIEWRASLAGSLFYAAGRDITVAKLAEEQMKAAKEAAEAASRAKSEFLATI 823

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
             +         G +S+  +      QQ     +R   +V             ++++K  
Sbjct: 824 SHEIRTPINAILGMTSLLLDTSLDPQQQDWVQTIRYGGEVLLNLINDILDFSKIESQKLE 883

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
           L     S     E+   +   Q   K        +       +   N       
Sbjct: 884 LEEIPFSLPQLVEELLDLMAAQAQSKDLELVAWVDPSLPPTLIGDPNRLRQILA 937


>gi|121997175|ref|YP_001001962.1| multi-sensor hybrid histidine kinase [Halorhodospira halophila SL1]
 gi|121588580|gb|ABM61160.1| multi-sensor hybrid histidine kinase [Halorhodospira halophila SL1]
          Length = 1266

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 134/744 (18%), Positives = 268/744 (36%), Gaps = 41/744 (5%)

Query: 93  GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPI 152
           G + E +      +G     + G+ + D              + ++R      ++     
Sbjct: 34  GRVLEGNPAAAAHLGYTPEALRGLTIADFEAAETPAEIAAHIEKIQRAGRDDFESQHRRR 93

Query: 153 EGTNLYVPIDLAALPIYSRNREFSGF-RGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
           +GT + V I ++         EF+G  R   +        +     +  +++F  + +  
Sbjct: 94  DGTLVDVQITVS-------QVEFAGHPRLLAVFRDITERKETIRALRTSEQRFLDVVDAA 146

Query: 212 KGHSSVEKEK--YDIFSQQSPPPHLRMKNKVSSLTEYYA---HKDDVLKTEKYPLLTSEE 266
             +         Y + + Q  P   R   ++   +        + + ++T       +  
Sbjct: 147 GEYIWEIDRDGTYQLVTAQIEPLLGRSTAEIIGRSPVDFMPSAEAERIQTMLSERAQTGA 206

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
           +    + +    +  +  ++     + N + E   +       +      + E    E +
Sbjct: 207 AWQGLEHESVRPDGTRVWQRVSGLPIFNEAGELIGFRGTGRDITAERQAQQNEKRLNERL 266

Query: 327 DKCPIP--FFVYSHGNL---FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
                     V+           +     +              L   L     +    +
Sbjct: 267 RLATTAARIGVWELDRATDRLEWDAGSARIFGTDPAAFNHRLANLQATLWDENRTIAEGL 326

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
               L+ ++       A     + +      +  +     ++  +     GI  +  D  
Sbjct: 327 IERSLHSAE----PCEAEFRIRRKSDGAIRHIRSVSLSIPDEHGQVQRLVGINEDITDRV 382

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
             + ++  +  +   + E    G+A+ +   G  L  N  VS+  GY  E   +  +   
Sbjct: 383 QAREQLAAQEARFRGLFELAPVGLAMTDFETGAFLDFNDQVSEAAGYTREAFAQLTYWDV 442

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF--SSCYSL-- 556
             +        +L  +         EK  +    +     + +   ++    +    +  
Sbjct: 443 TPREYEPKEREHLEAMARTGYYGPYEKEFIHR--DGHRFPVLLNGFRMTDPQTGRVVVWS 500

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            + DISE K  +  L  AK+ AE  +  KSDFLA +SHEIRTP+ A+IG  +++      
Sbjct: 501 VIQDISERKAVEQALHQAKEAAEANNRAKSDFLANMSHEIRTPMNAVIGLGQLLIETDLD 560

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
           P+       YA  +  +  ++L I+ND+LD SKIE+ ++ L   P  L E + +  +L  
Sbjct: 561 PV----QRNYAEKMHNASRMLLGIINDILDYSKIEADRLTLDPHPFDLHELMDQMATLFG 616

Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
             A EK + +       IP  +  D   + Q+  N+LSNAI FT  G Q+ +S T    +
Sbjct: 617 DQAGEKGLELFLRVEPTIPSSLEGDALRLSQVLSNLLSNAIKFTKHG-QVGLSITQLGQD 675

Query: 736 ----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
                +  +V DTG+G+T  +     + F Q   S      GTGLGL +++ +V    G+
Sbjct: 676 PEGVRLHFQVEDTGIGITPEQQRNLFQAFSQADTSTTRNYGGTGLGLVISQRLVAHMGGE 735

Query: 792 FYIFSTPAKGTL--IEIIFPLYDT 813
             + STP +GT    E+  P+  T
Sbjct: 736 LRLESTPGEGTRFAFELHLPIAGT 759



 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 39/383 (10%), Positives = 100/383 (26%), Gaps = 26/383 (6%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTW 143
           + W ID  G  + ++ ++   +G    ++IG    D       +     + +  +    W
Sbjct: 149 YIWEIDRDGTYQLVTAQIEPLLGRSTAEIIGRSPVDFMPSAEAERIQTMLSERAQTGAAW 208

Query: 144 YGKT-TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
            G        +GT   V   ++ LPI++   E  GFRG G       +   +   KRL++
Sbjct: 209 QGLEHESVRPDGT--RVWQRVSGLPIFNEAGELIGFRGTG--RDITAERQAQQNEKRLNE 264

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKN------KVSSLTEYYAHKDDVLKT 256
           +        +          D     +    +   +      ++++L      ++  +  
Sbjct: 265 RLRLATTAARIGVWELDRATDRLEWDAGSARIFGTDPAAFNHRLANLQATLWDENRTIAE 324

Query: 257 EKYPLLT-SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
                   S E    E       +      +    ++ +   +    +      +     
Sbjct: 325 GLIERSLHSAEPCEAEFRIRRKSDGAIRHIRSVSLSIPDEHGQVQRLVGINEDITDRVQA 384

Query: 316 DE----GENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
            E     E       +  P+   +     G     N        Y   +           
Sbjct: 385 REQLAAQEARFRGLFELAPVGLAMTDFETGAFLDFNDQVSEAAGYTR-EAFAQLTYWD-- 441

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
              P+  +    + +                  I  +      +    F   +     + 
Sbjct: 442 -VTPREYEPKEREHLEAMARTGYYGPYEKEF--IHRDGHRFPVL-LNGFRMTDPQTGRVV 497

Query: 430 QNGIEPEDVDTRINKRKMEIEVM 452
              +  +  + +  ++ +     
Sbjct: 498 VWSVIQDISERKAVEQALHQAKE 520



 Score = 97.4 bits (241), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 30/276 (10%), Positives = 75/276 (27%), Gaps = 17/276 (6%)

Query: 315 FDEGENLTPETVDKCPIP--FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
            D   +      D  P          G +   NP+      Y   + +          +A
Sbjct: 8   SDRRADEWRILFDHLPDATLLIAPDTGRVLEGNPAAAAHLGYTP-EALRGLTIAD--FEA 64

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
            +     A     + R+ R    +  R    + +         +   +    P       
Sbjct: 65  AETPAEIAAHIEKIQRAGRDDFESQHR----RRDGTLVDVQITVSQVEFAGHP---RLLA 117

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
           +  +  + +   R +     +   +++A  + I  I+R+G        +  L G    +I
Sbjct: 118 VFRDITERKETIRALRTSEQRFLDVVDAAGEYIWEIDRDGTYQLVTAQIEPLLGRSTAEI 177

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
           + +    F+       +   L+E                   +   +  R+    +   +
Sbjct: 178 IGRSPVDFMPSAEAERIQTMLSERAQTGAAW-QGLEHESVRPDGTRVWQRVSGLPIFNEA 236

Query: 553 ----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
                +  T  DI+  +Q +       +     ++ 
Sbjct: 237 GELIGFRGTGRDITAERQAQQNEKRLNERLRLATTA 272


>gi|302342593|ref|YP_003807122.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM 2075]
 gi|301639206|gb|ADK84528.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM 2075]
          Length = 1211

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 123/789 (15%), Positives = 261/789 (33%), Gaps = 63/789 (7%)

Query: 56   DQNQESVSNTNYLDSENTFVFDP-IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI 114
             Q+            E+ + F   +       + +   G    I+       G  A + +
Sbjct: 308  AQDISESKKAEEALRESEYRFRYFVENANDIVYALSPEGSFTYITPNWFDYFGEPAEEAL 367

Query: 115  GMRLCDVSDILHIDPNNH-IGDLLKRQNTWYGKTTLW-PIEGTNLYVPIDLAALPIYSRN 172
            G           +      +  +L+               +G+  +        P+    
Sbjct: 368  GKTFEPYVHPDDVGACRAFLTKVLETGQKQSSVEYRVQRRDGS--WRWHVSNGAPLRDAQ 425

Query: 173  REFSGFRGFGIVHVNRVDN-DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231
                G+   GI            AL +   +    +     G      +  ++F      
Sbjct: 426  GAIIGY--VGIARDVTESKNTAEALREAALRLQEAVRAANVGLWDWRLDTDEVFYSSEWK 483

Query: 232  PHLRMKNKVSSLT----EYYAHKDDVLKTEK--YPLLTSEESSLPEQEDFHTINLNQYTK 285
              +  ++          E   H +D+  T       L    + L  +  F   + +    
Sbjct: 484  RQIGFEDHEIGNDFAEWESRVHPEDLAPTMALIQRTLDGRAAKLQLEFRFRHKDGSYRWI 543

Query: 286  KQYFGTLQNNSKESFEYLS----HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNL 341
                  L++ +  +   L             A   E E      +   P   +   +   
Sbjct: 544  MAQGSVLRDEAGRATRMLGSHIDITERKQAEAALRESERTLHTLMANLPGMAYRCRNDEH 603

Query: 342  ---FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398
                + +   L LT Y+  + +    G           ++  +    + R+         
Sbjct: 604  WTMEFVSQGCLALTGYRPEELM---IGGRVSYAQVIRPEDREMVAQTVRRALGRREVFEL 660

Query: 399  RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458
                          +              +   G   +  + +  +  +     +L +I+
Sbjct: 661  IYIIQTAQGGQK-WVWERGCGVFGDDGRLLAVEGFISDMDELKRTEAALRANERRLSAIV 719

Query: 459  EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
            EA  D + + + +G     N A  ++FG+  E++L K    F+  +    +   + ++ +
Sbjct: 720  EAMPDPMVVYDGQGRATYLNPAFGQVFGWRPEELLGKAI-PFVPDDQKEAVVATIKDLFA 778

Query: 519  LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHA 574
                 T+   T   TK+ +LL + I   ++   +       + + D++  K+ + +L  A
Sbjct: 779  HGGPVTM--ETKRLTKDGRLLDIVISAARVLDEAGRVTGMVVNLTDVTHTKRLEAQLRQA 836

Query: 575  KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
            +K+              ++H+    LTAI G +E+  ++       P        I  + 
Sbjct: 837  QKM-----EAIGTLAGGIAHDFNNILTAISGNAELALDRARQGAATPAE---LEKILGAA 888

Query: 635  NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
            +    ++  ++  S+    K+  H +P++L++ V++A+S+++  A  K I +        
Sbjct: 889  DRARRLIKKIMFFSR----KVEFHPQPLNLNKVVTDAVSIIE-RAIPKMISVELRLEPTP 943

Query: 695  PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT--------------HTSNEEVILR 740
              I  D   ++QI LN+ SNA     +GG++II T                 + + + L 
Sbjct: 944  WTIKGDATQLEQIILNLASNAQDAMQNGGRLIIETANVCLDEKDAASHFHMAAGDYLRLT 1003

Query: 741  VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
            V DTGVG+  + LE   +PF          G+GTG+GL      V  + G  Y +S P +
Sbjct: 1004 VSDTGVGIDKHILEHIFEPFYTTK----EIGKGTGMGLASVYGAVQNHGGHIYCYSEPGQ 1059

Query: 801  GTLIEIIFP 809
            GT+ +   P
Sbjct: 1060 GTVFKCYLP 1068



 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 43/518 (8%), Positives = 133/518 (25%), Gaps = 31/518 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID-PNNHIGDLLKRQ-NTWYGK 146
           +   G L   +E+    +G    ++IG+   +++     D   +++   +  Q  +   +
Sbjct: 215 VGVDGRLVLANEQFAAMLGYDKDELIGLHFNEITHPDDRDIGKDYVASTVTGQAASARYE 274

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                 +G  ++  + L+   +     +   F                   +  + +F +
Sbjct: 275 KRYLRKDGAVVWARVSLSL--VRDAAGKPLHF--ISHAQDISESKKAEEALRESEYRFRY 330

Query: 207 LHEIKKGHSSVEKEKYDIFS---QQSPPPHLRMKNKVSSLTEYYAHKDD--VLKTEKYPL 261
             E           +                  +  +    E Y H DD    +     +
Sbjct: 331 FVENANDIVYALSPEGSFTYITPNWFDYFGEPAEEALGKTFEPYVHPDDVGACRAFLTKV 390

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL----SAYFDE 317
           L + +     +      + +          L++       Y+      +     +    E
Sbjct: 391 LETGQKQSSVEYRVQRRDGSWRWHVSNGAPLRDAQGAIIGYVGIARDVTESKNTAEALRE 450

Query: 318 GENLTPETVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
                 E V    +  + +       + +  +     ++  + I            P+  
Sbjct: 451 AALRLQEAVRAANVGLWDWRLDTDEVFYSSEWKRQIGFEDHE-IGNDFAEWESRVHPE-- 507

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           D      ++    D             +    +   +        ++        G   +
Sbjct: 508 DLAPTMALIQRTLDGRAAKLQLE-FRFRHKDGSYRWIMAQGSVLRDEAGRATRMLGSHID 566

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAII--NREGIILSTNRAVSKLFGYPVEDIL- 493
             + +  +  +      L +++            +    +   ++    L GY  E+++ 
Sbjct: 567 ITERKQAEAALRESERTLHTLMANLPGMAYRCRNDEHWTMEFVSQGCLALTGYRPEELMI 626

Query: 494 -RK-PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII-IKKLPF 550
             +  +   +      ++   +   L    R+  E I +  T +     +          
Sbjct: 627 GGRVSYAQVIRPEDREMVAQTVRRAL--GRREVFELIYIIQTAQGGQKWVWERGCGVFGD 684

Query: 551 SSCYSLT---MHDISEWKQEKNKLSHAKKIAEKESSHK 585
                     + D+ E K+ +  L   ++         
Sbjct: 685 DGRLLAVEGFISDMDELKRTEAALRANERRLSAIVEAM 722



 Score =  127 bits (318), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 37/281 (13%), Positives = 80/281 (28%), Gaps = 12/281 (4%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
                     EN    + D   I    V   G L  AN  F  +  Y   + I +     
Sbjct: 188 IETEKRLAASENRFRLSFDNANIGMVIVGVDGRLVLANEQFAAMLGYDKDELIGL----- 242

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
              +     D +  K  +         +A      ++ +    +          +   + 
Sbjct: 243 HFNEITHPDDRDIGKDYVASTVTGQAASARYEKRYLRKDGA-VVWARVSLSLVRDAAGKP 301

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
           +       +  +++  +  +     +    +E  +D +  ++ EG            FG 
Sbjct: 302 LHFISHAQDISESKKAEEALRESEYRFRYFVENANDIVYALSPEGSFTYITPNWFDYFGE 361

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
           P E+ L K F  ++  +       +LT++L    +Q+         ++            
Sbjct: 362 PAEEALGKTFEPYVHPDDVGACRAFLTKVLETGQKQS-SVEYRVQRRDGSWRWHVSNGAP 420

Query: 548 LPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
           L  +      Y     D++E K     L  A    ++    
Sbjct: 421 LRDAQGAIIGYVGIARDVTESKNTAEALREAALRLQEAVRA 461


>gi|330505536|ref|YP_004382405.1| PAS/PAC sensor signal transduction histidine kinase [Pseudomonas
            mendocina NK-01]
 gi|328919822|gb|AEB60653.1| PAS/PAC sensor signal transduction histidine kinase [Pseudomonas
            mendocina NK-01]
          Length = 1277

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 117/755 (15%), Positives = 250/755 (33%), Gaps = 65/755 (8%)

Query: 90   DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG---- 145
            D+ G +   +    + +G  A +M+G+R   V  +                    G    
Sbjct: 557  DSTGTITLFNSGAERLLGYRAEEMVGLRTPAVIHLEEEVQARAAELSATAGRPVEGFEIF 616

Query: 146  ---------KTTLW---PIEGTNLYVPIDLAALPIYSRNREFSGFRGFG--IVHVNRVDN 191
                     +T  W     +G+   V + ++A  ++    + +GF G    I  + +   
Sbjct: 617  VHNARGGEPETRQWTYRHKDGSLRQVNLTVSA--MFDECGQITGFLGIASDISELLQATR 674

Query: 192  DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE----YY 247
              +    R     ++L  +    +   +      S +         +             
Sbjct: 675  ALQKSESRFRGLVANLPGVVYRCADDAQRSMRYVSDEIANLCGYSASDFIDNHVRSYSSI 734

Query: 248  AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS--- 304
             H DD+  T++       + S            +    ++      ++            
Sbjct: 735  VHPDDLPSTQRASEAIKRQESFELTYRLRHAEGHNVWVREKGRAEYDSHGRLLWIDGFIW 794

Query: 305  -HRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEI 362
                  ++       +       +  P     V   G     N     +  Y   +    
Sbjct: 795  DVSERQAIEEELRLSQQRFLNAFNTAPQGMALVGPDGRWLEVNAELCRMLGYSREEL--- 851

Query: 363  AGGLSTLLDAPKLSDN-NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                +         D+ +A +  +         +       +       L +        
Sbjct: 852  ---QARTYQEVTHPDDLDADQQNVANLLAGRISSYQMEKRYLDKQGRT-LWVLLSVSLVR 907

Query: 422  NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
            +   + +       +  D    +R +      L ++L+   D I  I+ +G I + N A 
Sbjct: 908  DGEGQPVHFVSQVQDFSDRVAAERAVREREHYLSTLLDNVVDAIVSIDEQGRIETFNHAA 967

Query: 482  SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
             K+FGY  +++     T  +           L   +             G  +  +   +
Sbjct: 968  EKIFGYLQDEVAGHNITQLIPD---------LAGEVRQGCALDEFGEMDGVRQNGERFPM 1018

Query: 542  RIIIKKL--PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
             + + ++       +   + DI+E K+ +                K++F++ VSHE+RTP
Sbjct: 1019 ELAMSQISHQGQRRFITVIRDITERKRIE--------------QMKNEFVSTVSHELRTP 1064

Query: 600  LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
            LTAI G   +I     G +      +       +   +  ++NDLLD+ K+ +GKM    
Sbjct: 1065 LTAIAGSLGLINGGALGEVP-QTMRQMLAIAHSNSLRLSALINDLLDMEKLVAGKMQFDL 1123

Query: 660  EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719
            +   +   + +A+   Q YA + ++ +R    ++   +  D + + Q+  N+LSNA  F+
Sbjct: 1124 QARLMQPLLEQALLHNQPYAEQHQVELRLQVEDDAL-VNVDTQRLAQVMANLLSNAAKFS 1182

Query: 720  PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
            P GG +++    T  E + + V D G G+      +    F Q  +    +  GTGLGL 
Sbjct: 1183 PPGGNVVVCLQ-TLGEALRVSVSDNGPGIPEAFKPRIFSKFSQADSGDTRQQGGTGLGLA 1241

Query: 780  LAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
            + K +++   G+    S+P +G       P+  ++
Sbjct: 1242 ICKEIIERMGGQIGFDSSPGQGATFWFELPITGSA 1276



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 39/355 (10%), Positives = 98/355 (27%), Gaps = 19/355 (5%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQ-NTWYGK 146
            +   G   E++ EL + +G    ++      +V+    +D +   + +LL  + +++  +
Sbjct: 827  VGPDGRWLEVNAELCRMLGYSREELQARTYQEVTHPDDLDADQQNVANLLAGRISSYQME 886

Query: 147  TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                  +G    + + L+   +     +   F     V             +  +   S 
Sbjct: 887  KRYLDKQGRT--LWVLLSVSLVRDGEGQPVHF--VSQVQDFSDRVAAERAVREREHYLST 942

Query: 207  LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
            L +          E+  I +       +        L +  A  +             + 
Sbjct: 943  LLDNVVDAIVSIDEQGRIETFNHAAEKI-----FGYLQDEVAGHNITQLIPDLAGEVRQG 997

Query: 267  SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
             +L E  +   +  N           Q + +    +++     +     ++ +N    TV
Sbjct: 998  CALDEFGEMDGVRQNGERFPMELAMSQISHQGQRRFITVIRDITERKRIEQMKNEFVSTV 1057

Query: 327  DK---CPIPFFVYS-----HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
                  P+     S      G L     +   +      + + ++  ++ LLD  KL   
Sbjct: 1058 SHELRTPLTAIAGSLGLINGGALGEVPQTMRQMLAIAHSNSLRLSALINDLLDMEKLVAG 1117

Query: 379  NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
                 +           A           +  L +        N   + + Q   
Sbjct: 1118 KMQFDLQARLMQPLLEQALLHNQPYAEQHQVELRLQVEDDALVNVDTQRLAQVMA 1172



 Score = 73.1 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/324 (9%), Positives = 78/324 (24%), Gaps = 29/324 (8%)

Query: 283 YTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK--CPIPFFVYSHGN 340
            + ++    L    + +   L+           ++         D    P+       G 
Sbjct: 359 RSTRRSTQRLMQRQQAALRALNEIAALPSLTRTEQLRQALRLGADHFRMPLGIISRIEGE 418

Query: 341 LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR--TCIAASA 398
            +            +     E+     +L      +          +R        A  +
Sbjct: 419 QYQVLVQVSPEGTLRDGQQFELGDTYCSLALQQDEALAITHMADSTHRGHPCYGQFALES 478

Query: 399 RLHTIQWNREN--SLAMTFIPFEKANQFPENMPQNGIEPED-----VDTRINKRKMEIEV 451
            + T+                  +   F E                ++ +  +  +    
Sbjct: 479 YIGTVVRVGGKPFGTLAFANREPRKRPFDEADRDFLGLFARWVGAMLERQQQEHAVRSAR 538

Query: 452 MQLCSILEATS-DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
             L ++L++ +   I   +  G I   N    +L GY  E+++       +         
Sbjct: 539 AYLQAVLDSATGVSIIASDSTGTITLFNSGAERLLGYRAEEMVGLRTPAVIHLEEEVQAR 598

Query: 511 HYLTEILSLDLRQTLE-------------KITLGSTKEEKLLSLRIIIKKLPFS----SC 553
                  +    +  E             +      K+  L  + + +  +       + 
Sbjct: 599 AAELSATAGRPVEGFEIFVHNARGGEPETRQWTYRHKDGSLRQVNLTVSAMFDECGQITG 658

Query: 554 YSLTMHDISEWKQEKNKLSHAKKI 577
           +     DISE  Q    L  ++  
Sbjct: 659 FLGIASDISELLQATRALQKSESR 682


>gi|146294229|ref|YP_001184653.1| multi-sensor hybrid histidine kinase [Shewanella putrefaciens CN-32]
 gi|145565919|gb|ABP76854.1| PAS/PAC sensor hybrid histidine kinase [Shewanella putrefaciens
            CN-32]
          Length = 1771

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 126/781 (16%), Positives = 265/781 (33%), Gaps = 51/781 (6%)

Query: 59   QESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRL 118
               V+      + +  V +  P  +      D  G +   +    +  G +A  M+G+++
Sbjct: 501  FTDVTEQFSAAAWSNAVLEAAPEAMLIV---DEKGEIIFSNSRCQQLFGYHAEAMLGLQV 557

Query: 119  CDVSDILHIDPNNHIGDLLKRQNTWY-----GKTTLWPIEGTNLYVPIDLAALPIYSRNR 173
              +        +        R                  +G      I L+ LP      
Sbjct: 558  EALLPQALGSEHVRYRQQFLRDGRDRSMANARHVRAVKADGNEFIAEIALSILPA----- 612

Query: 174  EFSGFRGFGI-VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP 232
            +  G R     +             +  + +F  L     G     +       +     
Sbjct: 613  DVDGSRQVAASIRDMTQKLAIEQKIRDSELRFRGLVANIPGAVYRTRIGEVWVMEYISDN 672

Query: 233  HLRMKNKVSS---------LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY 283
               +    +S          +     +D  L  +      +++ +   +      + +  
Sbjct: 673  IADITGYAASQFIENRQRNFSSLILEEDRPLCHQHIDKALAQQETFEVEYRIRHRDGSIR 732

Query: 284  TKKQYFGTLQNNSKESFEYLSHRNHPSLSA----YFDEGENLTPETVDKCPIPFFVYS-- 337
               +      N       +    +  + S       +          +  P   +     
Sbjct: 733  WVHEKGKASYNEEGFPLWFDGSIDDITESKLVSVELEASRQQLTNITESIPCTVYQLRWR 792

Query: 338  ---HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394
                    + + + L +   +  + +     ++  +   +  +          +SD    
Sbjct: 793  SPSDRAFTFLSGAALPMLGLQRDNLMNDFNIIAERIFDEERPEVVRALAG---KSDDKLQ 849

Query: 395  AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
                R    +    +   M         +  + +  NG   +    +  ++++ +     
Sbjct: 850  WI--REFRYRHPNGSIRWMEA-GASGHVESDDVIIWNGYVMDITQRKTMEQELALSEAHF 906

Query: 455  CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
             ++ +  + GI  I+ +G+IL  N    +  G   E++   P    L      +      
Sbjct: 907  RALFDGATIGIINIDAKGLILDCNDQFCEDIGRAREELRNIPIFDVLSPQDREIAKAQFK 966

Query: 515  EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNK 570
            ++    +               + + + + +  L           ++M D++E K   ++
Sbjct: 967  DLADGKVDH-YRGERSFIRPSGEPMWMTVNVSALFDCHHQFESAVVSMVDMTELKLLSDE 1025

Query: 571  LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
            L  AK+ A+  S  K DFLA +SHEIRTP+ AIIG S++          + +   Y   I
Sbjct: 1026 LLIAKEEADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTAL----DKKQKNYVEKI 1081

Query: 631  DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
            +R+   +L I+ND+LD SKIE+GK+++   P  LD  + +   +       K++ +  + 
Sbjct: 1082 ERASQSLLSIINDILDFSKIEAGKLDIDAVPFQLDTMLEDLSDMFSEKVVHKQLELLFAV 1141

Query: 691  ANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ---IIISTTHTSNEEVILRVRDTGV 746
            A N+PR +  D   + Q+ +N+++NAI FT  G     I +      +  +   VRD+G+
Sbjct: 1142 APNVPRHLFGDSLRLGQVLINLMNNAIKFTERGEVLLSINLVEQQNDDVTLRFSVRDSGI 1201

Query: 747  GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
            G+T+ +  K  K F Q   S   +  GTGLGL + K +V+   G   + S    G+    
Sbjct: 1202 GLTDEQQAKLFKSFSQADTSTTRKYGGTGLGLAICKQLVELMGGNIGVESQFGHGSTFYF 1261

Query: 807  I 807
             
Sbjct: 1262 T 1262


>gi|120597632|ref|YP_962206.1| multi-sensor hybrid histidine kinase [Shewanella sp. W3-18-1]
 gi|120557725|gb|ABM23652.1| PAS/PAC sensor hybrid histidine kinase [Shewanella sp. W3-18-1]
          Length = 1771

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 126/781 (16%), Positives = 265/781 (33%), Gaps = 51/781 (6%)

Query: 59   QESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRL 118
               V+      + +  V +  P  +      D  G +   +    +  G +A  M+G+++
Sbjct: 501  FTDVTEQFSAAAWSNAVLEAAPEAMLIV---DEKGEIIFSNSRCQQLFGYHAEAMLGLQV 557

Query: 119  CDVSDILHIDPNNHIGDLLKRQNTWY-----GKTTLWPIEGTNLYVPIDLAALPIYSRNR 173
              +        +        R                  +G      I L+ LP      
Sbjct: 558  EALLPQALGSEHVRYRQQFLRDGRDRSMANARHVRAVKADGNEFIAEIALSILPA----- 612

Query: 174  EFSGFRGFGI-VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP 232
            +  G R     +             +  + +F  L     G     +       +     
Sbjct: 613  DVDGSRQVAASIRDMTQKLAIEQKIRDSELRFRGLVANIPGAVYRTRIGEVWVMEYISDN 672

Query: 233  HLRMKNKVSS---------LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY 283
               +    +S          +     +D  L  +      +++ +   +      + +  
Sbjct: 673  IADITGYAASQFIENRQRNFSSLILEEDRPLCHQHIDKALAQQETFEVEYRIRHRDGSIR 732

Query: 284  TKKQYFGTLQNNSKESFEYLSHRNHPSLSA----YFDEGENLTPETVDKCPIPFFVYS-- 337
               +      N       +    +  + S       +          +  P   +     
Sbjct: 733  WVHEKGKASYNEEGFPLWFDGSIDDITESKLVSVELEASRQQLTNITESIPCTVYQLRWR 792

Query: 338  ---HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394
                    + + + L +   +  + +     ++  +   +  +          +SD    
Sbjct: 793  SPSDRAFTFLSGAALPMLGLQRDNLMNDFNIIAERIFDEERPEVVRALAG---KSDDKLQ 849

Query: 395  AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
                R    +    +   M         +  + +  NG   +    +  ++++ +     
Sbjct: 850  WI--REFRYRHPNGSIRWMEA-GASGHVESDDVIIWNGYVMDITQRKTMEQELALSEAHF 906

Query: 455  CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
             ++ +  + GI  I+ +G+IL  N    +  G   E++   P    L      +      
Sbjct: 907  RALFDGATIGIINIDAKGLILDCNDQFCEDIGRAREELRNIPIFDVLSPQDREIAKAQFK 966

Query: 515  EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNK 570
            ++    +               + + + + +  L           ++M D++E K   ++
Sbjct: 967  DLADGKVDH-YRGERSFIRPSGEPMWMTVNVSALFDCHHQFESAVVSMVDMTELKLLSDE 1025

Query: 571  LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
            L  AK+ A+  S  K DFLA +SHEIRTP+ AIIG S++          + +   Y   I
Sbjct: 1026 LLIAKEEADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTAL----DKKQKNYVEKI 1081

Query: 631  DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
            +R+   +L I+ND+LD SKIE+GK+++   P  LD  + +   +       K++ +  + 
Sbjct: 1082 ERASQSLLSIINDILDFSKIEAGKLDIDAVPFQLDTMLEDLSDMFSEKVVHKQLELLFAV 1141

Query: 691  ANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ---IIISTTHTSNEEVILRVRDTGV 746
            A N+PR +  D   + Q+ +N+++NAI FT  G     I +      +  +   VRD+G+
Sbjct: 1142 APNVPRHLFGDSLRLGQVLINLMNNAIKFTERGEVLLSINLVEQQNDDVTLRFSVRDSGI 1201

Query: 747  GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
            G+T+ +  K  K F Q   S   +  GTGLGL + K +V+   G   + S    G+    
Sbjct: 1202 GLTDEQQAKLFKSFSQADTSTTRKYGGTGLGLAICKQLVELMGGNIGVESQFGHGSTFYF 1261

Query: 807  I 807
             
Sbjct: 1262 T 1262


>gi|294495114|ref|YP_003541607.1| PAS/PAC sensor signal transduction histidine kinase
            [Methanohalophilus mahii DSM 5219]
 gi|292666113|gb|ADE35962.1| PAS/PAC sensor signal transduction histidine kinase
            [Methanohalophilus mahii DSM 5219]
          Length = 1034

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 142/662 (21%), Positives = 252/662 (38%), Gaps = 40/662 (6%)

Query: 168  IYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ 227
            I+   RE S   GF +  +       +      +     +             +      
Sbjct: 391  IHDLFREVSDDLGFALYKIEMEKKRDQ-----YEAHIRLMTRNMNDVIIEADVEGRYTYI 445

Query: 228  QSPPPHL--RMKNKVSSLTEYYAHKDDVL-KTEKYPLLTSEESSLPEQEDFHTINLNQYT 284
                  +  R K  +        H DD+      +  +         +  +   +     
Sbjct: 446  SPSHQRVLGRGKELLGKNCMKDLHPDDIDFVASIFKKIVETGEQQHAEYRYLHPDKGYIW 505

Query: 285  KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE---TVDKCPIPFF---VYSH 338
                  +  + + +    ++ R+        +E + LT E            F   V   
Sbjct: 506  LGSVATSYVDENGQKRVLINTRDVTERKENEEEIKKLTEEYQTVFQGTQDSMFLIEVTDD 565

Query: 339  GNLFYA--NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA 396
                Y   N +  + T + S       G     L   K  D  +        S+ T    
Sbjct: 566  NEFRYMRNNRAHQVSTGFTSAYF---RGKTPQELAGKKTGDQLSANYKRCIDSNDTVSYE 622

Query: 397  SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
                                P     Q  E     G   +       + ++     +  S
Sbjct: 623  ETLEFP---AGTRMWQTALTPI---FQHGEVRYIVGSSQDITGRIKAENELRQSKQKYQS 676

Query: 457  ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
            ++E  ++ +  +++   +      +  + GY  E+++ K F  F+  +          ++
Sbjct: 677  LVENLNEIVYTLDQNATVTYVTPNIENISGYKPEEVIGKNFVEFVHPDDIRGRMEQFRKV 736

Query: 517  LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSH 573
            LS     +        TK    + +R   K +            + DI++ K+ + +L  
Sbjct: 737  LSGIDEPS---EYRFLTKSGDTVWVRTNAKPIIKDDKIVGIQGLLMDITDVKKAEKQLED 793

Query: 574  AKKIAEK-------ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
            A   A +        +  KS FLA +SHE+RTPL ++IGFS+++  +  G L N    +Y
Sbjct: 794  AVLRANEMAIQAEYANKTKSQFLANMSHELRTPLNSVIGFSDILLKEIKGEL-NDSQKKY 852

Query: 627  ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
             + I   G  +LD++ND+LD+SKIE+GKM L  E ++LD   SE  S++   A +K I +
Sbjct: 853  ISNISNGGRHLLDLINDILDLSKIEAGKMELACEDLNLDSVFSEIESVISPQAQKKSIDL 912

Query: 687  RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
              S   +I  I AD   +KQI  N+LSNAI FT   G++ +S      ++V + V+DTG+
Sbjct: 913  EISKPADI-EINADKSKIKQIIFNLLSNAIKFTDENGKVSMSAGEVDRDQVEITVKDTGI 971

Query: 747  GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
            G+   +L+K   PF Q  +S   +  GTGLGLPL K  V+ + G+  + S   KG++  +
Sbjct: 972  GIPEDKLDKIFDPFMQADSSTSRKYGGTGLGLPLVKEYVEMHGGEILVESEVGKGSVFTL 1031

Query: 807  IF 808
            +F
Sbjct: 1032 LF 1033



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 33/387 (8%), Positives = 97/387 (25%), Gaps = 41/387 (10%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID-PNNHIGDLLKRQNTWYGK 146
             D  G    IS    + +G    +++G           ID   +    +++     + +
Sbjct: 435 EADVEGRYTYISPSHQRVLG-RGKELLGKNCMKDLHPDDIDFVASIFKKIVETGEQQHAE 493

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK---- 202
                 +    Y+ +   A      N +    R            +     K+L +    
Sbjct: 494 YRYLHPD--KGYIWLGSVATSYVDENGQ---KRVLINTRDVTERKENEEEIKKLTEEYQT 548

Query: 203 ----------KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD 252
                           + +  +    +         S     +   +++        K  
Sbjct: 549 VFQGTQDSMFLIEVTDDNEFRYMRNNRAHQVSTGFTSAYFRGKTPQELAG------KKTG 602

Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY--LSHRNHPS 310
              +  Y        ++  +E        +  +       Q+                  
Sbjct: 603 DQLSANYKRCIDSNDTVSYEETLEFPAGTRMWQTALTPIFQHGEVRYIVGSSQDITGRIK 662

Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
                 + +      V+      +    +  + Y  P+   ++ YK  + I         
Sbjct: 663 AENELRQSKQKYQSLVENLNEIVYTLDQNATVTYVTPNIENISGYKPEEVIGKNFV---- 718

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
                +  ++    +  +R   + I   +    +  + +     T       +   + + 
Sbjct: 719 ---EFVHPDDIRGRMEQFRKVLSGIDEPSEYRFLTKSGDTVWVRTNAKPIIKD--DKIVG 773

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCS 456
             G+  +  D +  ++++E  V  L +
Sbjct: 774 IQGLLMDITDVKKAEKQLEDAV--LRA 798



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 12/127 (9%), Positives = 35/127 (27%), Gaps = 5/127 (3%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + +D +  +  ++  +    G    ++IG    +      I         +        
Sbjct: 685 VYTLDQNATVTYVTPNIENISGYKPEEVIGKNFVEFVHPDDIRGRMEQFRKVLSGIDEPS 744

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +       G    V +   A PI  ++ +  G +G  +              +    + +
Sbjct: 745 EYRFLTKSGDT--VWVRTNAKPI-IKDDKIVGIQGLLM--DITDVKKAEKQLEDAVLRAN 799

Query: 206 HLHEIKK 212
            +    +
Sbjct: 800 EMAIQAE 806



 Score = 48.5 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/138 (13%), Positives = 42/138 (30%), Gaps = 12/138 (8%)

Query: 447 MEIEVMQLCSILEATSDGIAIIN--REGIILSTNRAVSKLFGYPVEDILRKP--FTVFLE 502
           +     +     E +S+ I   +          N+A +++ GY  E+  R P      + 
Sbjct: 117 LSQNEAKFYEFAERSSEPIYRYDLIPRPGYTYVNKATTQMDGYTPEEHYRDPQLAIKIVH 176

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTM 558
                +   Y        +            K+ + +    + K +  S+          
Sbjct: 177 PEDKQLFLDYFE----GKIPIDKRIQLRWVHKKGQTVWFEYVNKPVYDSNGNLIAVEGIG 232

Query: 559 HDISEWKQEKNKLSHAKK 576
            DI++ K  + +  H K 
Sbjct: 233 RDITDMKIAQEREQHIKD 250


>gi|319427574|gb|ADV55648.1| multi-sensor hybrid histidine kinase [Shewanella putrefaciens 200]
          Length = 1770

 Score =  410 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 126/781 (16%), Positives = 265/781 (33%), Gaps = 51/781 (6%)

Query: 59   QESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRL 118
               V+      + +  V +  P  +      D  G +   +    +  G +A  M+G+++
Sbjct: 501  FTDVTEQFSAAAWSNAVLEAAPEAMLIV---DEKGEIIFSNSRCQQLFGYHAEAMLGLQV 557

Query: 119  CDVSDILHIDPNNHIGDLLKRQNTWY-----GKTTLWPIEGTNLYVPIDLAALPIYSRNR 173
              +        +        R                  +G      I L+ LP      
Sbjct: 558  EALLPQALGSEHVRYRQQFLRDGRDRSMANARHVRAVKADGNEFIAEIALSILPA----- 612

Query: 174  EFSGFRGFGI-VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP 232
            +  G R     +             +  + +F  L     G     +       +     
Sbjct: 613  DVDGSRQVAASIRDMTQKLAIEQKIRDSELRFRGLVANIPGAVYRTRIGEVWVMEYISDN 672

Query: 233  HLRMKNKVSS---------LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY 283
               +    +S          +     +D  L  +      +++ +   +      + +  
Sbjct: 673  IADITGYAASQFIENRQRNFSSLILEEDRPLCHQHIDKALAQQETFEVEYRIRHRDGSIR 732

Query: 284  TKKQYFGTLQNNSKESFEYLSHRNHPSLSA----YFDEGENLTPETVDKCPIPFFVYS-- 337
               +      N       +    +  + S       +          +  P   +     
Sbjct: 733  WVHEKGKASYNEEGFPLWFDGSIDDITESKLVSVELEASRQQLTNITESIPCTVYQLRWR 792

Query: 338  ---HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394
                    + + + L +   +  + +     ++  +   +  +          +SD    
Sbjct: 793  SPSDRAFTFLSGAALPMLGLQRDNLMNDFNIIAERIFDDERPEVVRALAG---KSDDKLQ 849

Query: 395  AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
                R    +    +   M         +  + +  NG   +    +  ++++ +     
Sbjct: 850  WI--REFRYRHPNGSIRWMEA-GASGHVESDDVIIWNGYVMDITQRKTMEQELALSEAHF 906

Query: 455  CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
             ++ +  + GI  I+ +G+IL  N    +  G   E++   P    L      +      
Sbjct: 907  RALFDGATIGIINIDAKGLILDCNDQFCEDIGRAREELRNIPIFDVLSPQDREIAKAQFK 966

Query: 515  EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNK 570
            ++    +               + + + + +  L           ++M D++E K   ++
Sbjct: 967  DLADGKVDH-YRGERSFIRPSGEPMWMTVNVSALFDCHHQFESAVVSMVDMTELKLLSDE 1025

Query: 571  LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
            L  AK+ A+  S  K DFLA +SHEIRTP+ AIIG S++          + +   Y   I
Sbjct: 1026 LLIAKEEADAASKAKGDFLANMSHEIRTPMNAIIGMSQLCLQTAL----DKKQKNYVEKI 1081

Query: 631  DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
            +R+   +L I+ND+LD SKIE+GK+++   P  LD  + +   +       K++ +  + 
Sbjct: 1082 ERASQSLLSIINDILDFSKIEAGKLDIDAVPFQLDTMLEDLSDMFSEKVVHKQLELLFAV 1141

Query: 691  ANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ---IIISTTHTSNEEVILRVRDTGV 746
            A N+PR +  D   + Q+ +N+++NAI FT  G     I +      +  +   VRD+G+
Sbjct: 1142 APNVPRHLFGDSLRLGQVLINLMNNAIKFTERGEVLLSINLVEQQNDDVTLRFSVRDSGI 1201

Query: 747  GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
            G+T+ +  K  K F Q   S   +  GTGLGL + K +V+   G   + S    G+    
Sbjct: 1202 GLTDEQQAKLFKSFSQADTSTTRKYGGTGLGLAICKQLVELMGGNIGVESQFGHGSTFYF 1261

Query: 807  I 807
             
Sbjct: 1262 T 1262


>gi|152999371|ref|YP_001365052.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS185]
 gi|151363989|gb|ABS06989.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS185]
          Length = 1782

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 124/756 (16%), Positives = 267/756 (35%), Gaps = 50/756 (6%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLC-----DVSDILHIDPNNHIGDLLKRQNTW 143
            +D  G +   +    +  G     M+G+++      ++ +   ++    + +   R    
Sbjct: 531  VDELGQIVFTNSRCLQLFGYETGAMLGLQVEALLPQELGERHVLERQTFLREGRDRSMAN 590

Query: 144  YGKTTLWPIEGTNLYVPIDLAALPI-YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
                     +G      I L+ LP  +   R+ +       +             +  ++
Sbjct: 591  ARHVRALKADGNEFIAEIALSILPTAFDGQRQVA-----ASIRDMTQKLAVEQKIRDSEQ 645

Query: 203  KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS---------LTEYYAHKDDV 253
            +F  L     G     +     F +        +    +S                +D  
Sbjct: 646  RFRGLVTNIPGAVYRTRIGDVWFMEYISDNIAEITGYAASQFIENRQRTFASLILEEDRP 705

Query: 254  LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
                      +++ +   +      + +     +              +    +  + S 
Sbjct: 706  TCHLHIDRALAQQETFEVEYRIRHRDGSIRWVHEKGKASYTEEGIPLWFDGSIDDITESK 765

Query: 314  YF----DEGENLTPETVDKCPIPFFVYS-----HGNLFYANPSFLLLTKYKSVDDIEIAG 364
                  ++         +  P   +             + + + + +      D +    
Sbjct: 766  LALVQLEQSRQQMTNITESIPCTVYQLQWQSPTDRRFTFLSGAAMKMLGLHRDDLMSNFD 825

Query: 365  GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
             ++  +   +  D   ++ +     DR       R    +    +   M         + 
Sbjct: 826  IIAERIFDEERPD--VVRALSGKSEDRLQW---IREFRYRHPNGSIRWMEAGASGHLGEE 880

Query: 425  PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
               +  NG   +    +  ++++ +      ++ +  + GI  ++ +G+IL  N      
Sbjct: 881  G-AITWNGYVMDITQRKTIEQELALSEAHFKALFDGATIGIVNVDIKGVILDCNDQFCAD 939

Query: 485  FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
                   +        L +    +      E++   +                 L + + 
Sbjct: 940  MALSRNHLRNTAIFEVLSEQDQPIAKAQFQELVEGKIDH-YRGERSFIRPSGAPLWMTVN 998

Query: 545  IKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
            +  L  +        ++M D++E K   ++L  AK+ A+  S  K DFLA +SHEIRTP+
Sbjct: 999  VSALLDAQGQFESAVISMVDMTELKLLSDELLLAKEQADAASKAKGDFLANMSHEIRTPM 1058

Query: 601  TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
             AIIG S++          + +   Y   I+R+   +L I+ND+LD SKIE+GK+++   
Sbjct: 1059 NAIIGMSQLCLQTEL----DKKQKNYVEKIERASQSLLSIINDILDFSKIEAGKLDIDSI 1114

Query: 661  PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFT 719
            P  LD  + +   +    A  K+I +  + A N+PR +L D   + Q+ +N+++NAI FT
Sbjct: 1115 PFQLDTMLEDLSDMFSEKAAHKQIELLFAVAPNVPRYLLGDSLRLGQVLINLMNNAIKFT 1174

Query: 720  PSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
              G ++++S +    ++    +   VRD+G+G+T  +  K  K F Q   S   +  GTG
Sbjct: 1175 ERG-EVLLSLSLVEQQDDDVVLRFSVRDSGIGLTEQQQAKLFKSFTQADTSTTRKYGGTG 1233

Query: 776  LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
            LGL + K +V+   GK  + S    G+       L+
Sbjct: 1234 LGLAICKQLVELMGGKIGVESQFGHGSTFYFTVKLH 1269



 Score =  115 bits (289), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 57/584 (9%), Positives = 160/584 (27%), Gaps = 58/584 (9%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNT 142
           F  ++D  G L ++SE + K +G     ++  +   +     ++  N       LK QN 
Sbjct: 408 FYCSLDPDGQLAQVSEGVTKVLGISPD-LLKRKYQRLFSANPLNEKNWQYTDLALKGQNV 466

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA---LGKR 199
              +  +   +G    + + +   P+ S   E        +                   
Sbjct: 467 PSHQVEMLDDQGHLRRLDVFM--QPLMSDTGELMSVE--MLFTDVTEQFSAAVWSNAVLE 522

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
              +   + +              +F  ++          +        H  +     + 
Sbjct: 523 AAPEAMLIVDELGQIVFTNSRCLQLFGYETGAMLGLQVEALLPQELGERHVLERQTFLRE 582

Query: 260 PLLTSEESSLPEQEDFHTINL--NQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
               S  ++   +      N    +              + +          ++     +
Sbjct: 583 GRDRSMANARHVRALKADGNEFIAEIALSILPTAFDGQRQVAASIRDMTQKLAVEQKIRD 642

Query: 318 GENLTPETVDKCPIPFFVYSHGNL---FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
            E      V   P   +    G++    Y + +   +T Y +   IE          +  
Sbjct: 643 SEQRFRGLVTNIPGAVYRTRIGDVWFMEYISDNIAEITGYAASQFIENRQ---RTFASLI 699

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
           L ++     + + R+           + I+    +   +         +    +  +G  
Sbjct: 700 LEEDRPTCHLHIDRALAQQETFEVE-YRIRHRDGSIRWVHEKGKASYTEEGIPLWFDGSI 758

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN----REGIILSTNRAVSKLFGYPVE 490
            +  ++++   ++E    Q+ +I E+    +  +      +      + A  K+ G   +
Sbjct: 759 DDITESKLALVQLEQSRQQMTNITESIPCTVYQLQWQSPTDRRFTFLSGAAMKMLGLHRD 818

Query: 491 DIL--RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
           D++         +       +   L+      L+    +          +  +       
Sbjct: 819 DLMSNFDIIAERIFDEERPDVVRALSGKSEDRLQWI--REFRYRHPNGSIRWMEAGASGH 876

Query: 549 PFSSCYS---LTMHDISEWKQEKNKLSHAKKIAEKESSHKS-----------------DF 588
                       + DI++ K  + +L+ ++   +      +                  F
Sbjct: 877 LGEEGAITWNGYVMDITQRKTIEQELALSEAHFKALFDGATIGIVNVDIKGVILDCNDQF 936

Query: 589 LARVS----HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
            A ++    H +R   TAI      + +++  P+   ++ E   
Sbjct: 937 CADMALSRNH-LRN--TAIF----EVLSEQDQPIAKAQFQELVE 973



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/352 (11%), Positives = 97/352 (27%), Gaps = 23/352 (6%)

Query: 235 RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294
            M + + +L+                L    E        F      Q    Q   +   
Sbjct: 309 DMASIILNLSLLTLLLLLTCYLAAKRLTRPLELLESGILSFGQGKTQQLIIPQGAVSEIV 368

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF---VYSHGNLFYANPSFLLL 351
               +F  ++        A  D   N     +D      F   +   G L   +     +
Sbjct: 369 TLSNTFNQMAELLAEREQAILDSRGNRFARLIDGMSDKSFYCSLDPDGQLAQVSEGVTKV 428

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411
                 D ++       L  A  L++ N     +  +         +    +  ++ +  
Sbjct: 429 LGISP-DLLKRKYQ--RLFSANPLNEKNWQYTDLALKGQ----NVPSHQVEMLDDQGHLR 481

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471
            +        +   E M    +  +  +                ++LEA  + + I++  
Sbjct: 482 RLDVFMQPLMSDTGELMSVEMLFTDVTEQFSAAVWS-------NAVLEAAPEAMLIVDEL 534

Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL--EKIT 529
           G I+ TN    +LFGY    +L       L Q             L     +++   +  
Sbjct: 535 GQIVFTNSRCLQLFGYETGAMLGLQVEALLPQELGERHVLERQTFLREGRDRSMANARHV 594

Query: 530 LGSTKEEKLL----SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI 577
                +        +L I+          + ++ D+++    + K+  +++ 
Sbjct: 595 RALKADGNEFIAEIALSILPTAFDGQRQVAASIRDMTQKLAVEQKIRDSEQR 646


>gi|222110175|ref|YP_002552439.1| multi-sensor hybrid histidine kinase [Acidovorax ebreus TPSY]
 gi|221729619|gb|ACM32439.1| multi-sensor hybrid histidine kinase [Acidovorax ebreus TPSY]
          Length = 1611

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 131/750 (17%), Positives = 269/750 (35%), Gaps = 37/750 (4%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147
             DA G +  ++ +  +  G    ++ G +    +           +   L   ++W G+ 
Sbjct: 366  TDAEGVIAWVNPQYERNTGYTLGEVRGRKPSIAASEHTPAGTYRDMWSRLLAGHSWRGRF 425

Query: 148  TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                 +GT  +    L+  P++            G++       +     +R ++  S L
Sbjct: 426  VNRRRDGTLYHEEATLS--PVFDAKGRRIAI--VGLLQDVTARIEAAQELERRERHLSEL 481

Query: 208  HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA-HKDDVLKTEKYPLLTSEE 266
             E +            +   Q    +  +   + S  E  A      L   +        
Sbjct: 482  LEQQTALFDNAPPIVLVCDGQIRQFNRALAELLRSSDEALAGTPVQELFGGEAGYGAFTA 541

Query: 267  SSLPEQEDFHTINLNQYTKKQYFGTLQNN------------SKESFEYLSHRNHPSLSAY 314
             ++P      ++      ++    +                    +            A 
Sbjct: 542  RTVPMLLAGGSVREQAVLRRPDGTSFTARMAGRGLKMEGVQIASLWVIEDVTEAQRAEAA 601

Query: 315  FDEGENLTPETVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSVDDIEIAGGLSTLLDA- 372
              E         +   I  F Y+        +P    L    S+   +          A 
Sbjct: 602  TREANARLELAQEAGHIGVFDYNLLTQRMVWSPQLEQLYGAASLPAQKDGHAAERPFQAW 661

Query: 373  ---PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
                   D   ++ ++                 I     ++  +        ++  +   
Sbjct: 662  VDVIHPEDRARVQGLLAQAQAGQGGGRLRDSWRIVRADGSTRWILCTARVVRDEAGQAAR 721

Query: 430  QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
              G++ +  D ++ + ++  ++    ++++A    +   + +G  L  NRA  + F    
Sbjct: 722  IIGVQVDVHDQKMLEARVAEQLAFQQALIDAIPVPLFYKDAQGRYLGFNRAYVQAFDIHT 781

Query: 490  EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE----KLLSLRIII 545
            ED + K                +     +L   Q++ +       +      +  L    
Sbjct: 782  EDFIGKTVLDLEFLPMLERERLHADTEAALRGAQSVHREVAMPYADGLVHHTMFWLHGFN 841

Query: 546  KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
            +    +     T  D+S+ ++ + +L  AK++AE+ ++ KS FLA +SHEIRTPL AIIG
Sbjct: 842  RPDGSAGGVIGTFVDVSDRQRAEVELRRAKELAEETAALKSRFLANMSHEIRTPLNAIIG 901

Query: 606  FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
             S +          + R   Y   + ++G  +L ++ND+LD SKIE+GK+ +   P +LD
Sbjct: 902  MSHLALKSGL----DARQSGYVVRMQQAGQHLLGVINDILDFSKIEAGKLVVERSPFALD 957

Query: 666  EAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ 724
              +     +V   A  K + +    A ++P+ ++ D   + QI +N  +NA+ FT  G +
Sbjct: 958  RMLEGVADVVGFKAAAKGLELVLDVAPDVPQHLVGDALRLGQILINFANNAVKFTEQG-E 1016

Query: 725  IIISTTHTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
            I +      NE     +   VRDTG+G+   ++++  + F Q   S   R  GTGLGL +
Sbjct: 1017 IHLLVRLERNEGARVWLRFEVRDTGIGIAPQQMQRLFQSFEQADTSTTRRYGGTGLGLAI 1076

Query: 781  AKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            +K++ +   G+  + S    G+   +  PL
Sbjct: 1077 SKSLAELMGGEVGVRSELGHGSAFWVTVPL 1106



 Score =  104 bits (259), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 39/354 (11%), Positives = 92/354 (25%), Gaps = 27/354 (7%)

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPE-----QEDFHTINLNQYTKKQYFGTLQNNSKESFE 301
            A  D V        +  E+ + P       +    + +                  +  
Sbjct: 273 EALIDGVRYAVGRRAVDWEDPAGPWQLVLLDDMSAIMPMGLRWMVGGGAFALFALVGAMA 332

Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDI 360
             + RN   L A   +  ++    ++  PI   +    G + + NP +   T Y     +
Sbjct: 333 LDALRNRRRL-AESMQRFSVLGAALENSPISIVITDAEGVIAWVNPQYERNTGYT----L 387

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
               G    + A + +     + +                   +                
Sbjct: 388 GEVRGRKPSIAASEHTPAGTYRDMWSRLLAGHSWRGR---FVNRRRDGTLYHEEATLSPV 444

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC-------SILEATSDGIAIINREGI 473
            +     +   G+  +        +++E     L        ++ +     + + +  G 
Sbjct: 445 FDAKGRRIAIVGLLQDVTARIEAAQELERRERHLSELLEQQTALFDNAPPIVLVCD--GQ 502

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
           I   NRA+++L     E +   P                 T  + L      E+  L   
Sbjct: 503 IRQFNRALAELLRSSDEALAGTPVQELFGGEAGYGAFTARTVPMLLAGGSVREQAVL-RR 561

Query: 534 KEEKLLSLRIIIKKLPFSSCYSL---TMHDISEWKQEKNKLSHAKKIAEKESSH 584
            +    + R+  + L            + D++E ++ +     A    E     
Sbjct: 562 PDGTSFTARMAGRGLKMEGVQIASLWVIEDVTEAQRAEAATREANARLELAQEA 615



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 49/492 (9%), Positives = 127/492 (25%), Gaps = 50/492 (10%)

Query: 140 QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRAL--- 196
           +++       W      L+V +  A          +       +V   +  ++   L   
Sbjct: 12  RDSLRDPQGRWLRG--ALWVLVLAAL-------GAWLAVEAVALVRSEQRQHERNQLLEG 62

Query: 197 ------GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR----MKNKVSSLTEY 246
                 G+  +     +  +        K     F     PP L     ++ +      Y
Sbjct: 63  MEQTLLGESSNGPLLGMVTLLGLSEPSLKAAAQGFLPYDAPPVLARLGVIRGRFMVDGAY 122

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
              +D  +         +  + L  +  F        +     G         +    + 
Sbjct: 123 VIARDGTVVAHDTAGNRTTGAQLGHRPYFQQALQGNASVYAALGGTSQERGLYYAAPLYE 182

Query: 307 NHPSLS-----AYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSV---- 357
           +    S          G +     + +   P  + S   + +++     L    +     
Sbjct: 183 SDTPSSPIIGVVAVKVGFSHFDRLLTRAGHPVLLMSPQGVVFSSTRPEWLYAMTAPLTQE 242

Query: 358 --DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
             D +       +  D   +S             D    A   R    +        +  
Sbjct: 243 RIDAVRSTRQFGSRFDNGLVSALPFSIDSREALIDGVRYAVGRRAVDWEDPAGPWQLVLL 302

Query: 416 IPFEKANQFPENMPQNGIEPED--------VDTRINKRKMEIEVMQ---LCSILEATSDG 464
                           G             +D   N+R++   + +   L + LE +   
Sbjct: 303 DDMSAIMPMGLRWMVGGGAFALFALVGAMALDALRNRRRLAESMQRFSVLGAALENSPIS 362

Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
           I I + EG+I   N    +  GY + ++  +  ++   ++TP+     +   L      +
Sbjct: 363 IVITDAEGVIAWVNPQYERNTGYTLGEVRGRKPSIAASEHTPAGTYRDMWSRLLAG--HS 420

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEK 580
                +   ++  L      +  +  +          + D++   +   +L   ++   +
Sbjct: 421 WRGRFVNRRRDGTLYHEEATLSPVFDAKGRRIAIVGLLQDVTARIEAAQELERRERHLSE 480

Query: 581 ESSHKSDFLARV 592
               ++      
Sbjct: 481 LLEQQTALFDNA 492



 Score = 46.6 bits (109), Expect = 0.018,   Method: Composition-based stats.
 Identities = 29/293 (9%), Positives = 65/293 (22%), Gaps = 21/293 (7%)

Query: 48  SFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIG 107
           +  Q       + +       ++ +  VFD    T R  W+          S  LP    
Sbjct: 593 TEAQRAEAATREANARLELAQEAGHIGVFDYNLLTQRMVWSPQLEQLYGAAS--LPAQKD 650

Query: 108 NYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPI---EGTNLYVPIDLA 164
            +A +       DV           +    +           W I   +G+  ++     
Sbjct: 651 GHAAERPFQAWVDVIHPEDRARVQGLLAQAQAGQGGGRLRDSWRIVRADGSTRWILCT-- 708

Query: 165 ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDI 224
           A  +     +    R  G+           A           L +        +  +   
Sbjct: 709 ARVVRDEAGQ--AARIIGVQVDVHDQKMLEARVAEQLAFQQALIDAIPVPLFYKDAQGRY 766

Query: 225 FSQQSPPPHL-------RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHT 277
                             +   V  L      + + L  +    L   + S+  +     
Sbjct: 767 LGFNRAYVQAFDIHTEDFIGKTVLDLEFLPMLERERLHADTEAALRGAQ-SVHREVAMPY 825

Query: 278 INL----NQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
            +       +    +     +       ++   +           + L  ET 
Sbjct: 826 ADGLVHHTMFWLHGFNRPDGSAGGVIGTFVDVSDRQRAEVELRRAKELAEETA 878


>gi|163849319|ref|YP_001637363.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|163670608|gb|ABY36974.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
          Length = 1209

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 118/739 (15%), Positives = 250/739 (33%), Gaps = 41/739 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTWYGK 146
            D  G ++ ++E   +  G    ++ G +  +       DP     I   L    +   +
Sbjct: 223 TDRDGRIEWVNEGFTRISGYTLDEVRGRKPGEFLQGPETDPATVARIRQALDNGESVKAE 282

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL--DKKF 204
              +  +G      + L   P+Y         R   I        +   + +    + + 
Sbjct: 283 IVNYTKQGRPY--WLALNISPVYDDQHNLI--RFIAIESDITQQKEMERMLRAALKESRD 338

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEKYPLL 262
                 +    S+   +  I         +     +++                    L 
Sbjct: 339 VMNALDESTILSIADPEGRILEVNERFCAITGYRADELIGKDHRMFKSGIHPPEFFADLW 398

Query: 263 TSEESSLPEQEDF--HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
            + ++    + +      +   +           +  +   YL+ R   +     +E   
Sbjct: 399 QTIKAGRIWRNEICNRAKDGRLFWVDTTIVPFIGDDGKPERYLAVRFDITARKQSEEQLR 458

Query: 321 ----LTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
                    +        V    G +   N S   +        I             + 
Sbjct: 459 ASETRYRSVITAMSEGIVVMNRAGEIETCNASAERILGLSRDQLIGRTSFDPRWQAIHED 518

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
                 +   +  S  T  A +  +  I+        ++       ++            
Sbjct: 519 GSPFPGEEHPIMVSLTTGRALNDVIMGIRKPSGELTWLSINSQPLCDEQGNVYAAVASFH 578

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
           +    R+ ++++  +   L    EA+ DG+ +++ E   L +NR   +++     ++   
Sbjct: 579 DITARRLAEQELRFQKTLLECQTEASPDGVLVVSPERRCLYSNRRFREMWNLSDREVDHV 638

Query: 496 PFTV----FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
             T       +   P  + + + E+ +        +I L   K+ +              
Sbjct: 639 MCTCMESLLAQVCDPERVRNEIEELYANPSLSGKAEIEL---KDGRTFERYSAPVISAEG 695

Query: 552 S--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                     D++E +  +                K++F+A VSHE+RTPLT+I G   +
Sbjct: 696 EYYGRVWFFRDVTERRAIE--------------RMKNEFVAVVSHELRTPLTSIRGSLGL 741

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           +     G L  PR     +   ++   ++ ++ND+LDI KIESGKM   F+PV LDE V 
Sbjct: 742 LAGGVVGELP-PRAASMIDIALKNSERLIRLINDILDIEKIESGKMVFKFQPVVLDELVR 800

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
           + I   + +  +  + I  +      ++  D   + Q+  N++SNAI F+P GG++ ++ 
Sbjct: 801 QTIEANRGFGQQYDVAIELTATLPGVQVYVDPDRIAQVITNLISNAIKFSPPGGKVEVAI 860

Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
                  + + V D G G+     ++  + F Q  +S   R  GTGLGL +++A+V+ + 
Sbjct: 861 GREPRGRIRITVTDHGPGIPVEFRDRIFQKFAQADSSNTRRQGGTGLGLSISRAIVERHG 920

Query: 790 GKFYIFSTPAKGTLIEIIF 808
           G+    +    GT   +  
Sbjct: 921 GQIGFVTASGVGTTFYVDL 939



 Score = 83.5 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 62/153 (40%), Gaps = 8/153 (5%)

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK-PFT 498
           TR  +R+ E ++  L  +   T + + I +R+G I   N   +++ GY ++++  + P  
Sbjct: 196 TRRARREAE-QLRMLSLVARHTDNAVIITDRDGRIEWVNEGFTRISGYTLDEVRGRKPGE 254

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CY 554
                 T       + + L     ++++   +  TK+ +   L + I  +         +
Sbjct: 255 FLQGPETDPATVARIRQALDNG--ESVKAEIVNYTKQGRPYWLALNISPVYDDQHNLIRF 312

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
                DI++ K+ +  L  A K +    +   +
Sbjct: 313 IAIESDITQQKEMERMLRAALKESRDVMNALDE 345


>gi|222527313|ref|YP_002571784.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl]
 gi|222451192|gb|ACM55458.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl]
          Length = 1209

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 118/739 (15%), Positives = 250/739 (33%), Gaps = 41/739 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTWYGK 146
            D  G ++ ++E   +  G    ++ G +  +       DP     I   L    +   +
Sbjct: 223 TDRDGRIEWVNEGFTRISGYTLDEVRGRKPGEFLQGPETDPATVARIRQALDNGESVKAE 282

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL--DKKF 204
              +  +G      + L   P+Y         R   I        +   + +    + + 
Sbjct: 283 IVNYTKQGRPY--WLALNISPVYDDQHNLI--RFIAIESDITQQKEMERMLRAALKESRD 338

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEKYPLL 262
                 +    S+   +  I         +     +++                    L 
Sbjct: 339 VMNALDESTILSIADPEGRILEVNERFCAITGYRADELIGKDHRMFKSGIHPPEFFADLW 398

Query: 263 TSEESSLPEQEDF--HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
            + ++    + +      +   +           +  +   YL+ R   +     +E   
Sbjct: 399 QTIKAGRIWRNEICNRAKDGRLFWVDTTIVPFIGDDGKPERYLAVRFDITARKQSEEQLR 458

Query: 321 ----LTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
                    +        V    G +   N S   +        I             + 
Sbjct: 459 ASETRYRSVITAMSEGIVVMNRAGEIETCNASAERILGLSRDQLIGRTSFDPRWQAIHED 518

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
                 +   +  S  T  A +  +  I+        ++       ++            
Sbjct: 519 GSPFPGEEHPIMVSLTTGRALNDVIMGIRKPSGELTWLSINSQPLCDEQGNVYAAVASFH 578

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
           +    R+ ++++  +   L    EA+ DG+ +++ E   L +NR   +++     ++   
Sbjct: 579 DITARRLAEQELRFQKTLLECQTEASPDGVLVVSPERRCLYSNRRFREMWNLSDREVDHV 638

Query: 496 PFTV----FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
             T       +   P  + + + E+ +        +I L   K+ +              
Sbjct: 639 MCTCMESLLAQVCDPERVRNEIEELYANPSLSGKAEIEL---KDGRTFERYSAPVISAEG 695

Query: 552 S--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                     D++E +  +                K++F+A VSHE+RTPLT+I G   +
Sbjct: 696 EYYGRVWFFRDVTERRAIE--------------RMKNEFVAVVSHELRTPLTSIRGSLGL 741

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           +     G L  PR     +   ++   ++ ++ND+LDI KIESGKM   F+PV LDE V 
Sbjct: 742 LAGGVVGELP-PRAASMIDIALKNSERLIRLINDILDIEKIESGKMVFKFQPVVLDELVR 800

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
           + I   + +  +  + I  +      ++  D   + Q+  N++SNAI F+P GG++ ++ 
Sbjct: 801 QTIEANRGFGQQYDVAIELTATLPGVQVYVDPDRIAQVITNLISNAIKFSPPGGKVEVAI 860

Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
                  + + V D G G+     ++  + F Q  +S   R  GTGLGL +++A+V+ + 
Sbjct: 861 GREPRGRIRITVTDHGPGIPVEFRDRIFQKFAQADSSNTRRQGGTGLGLSISRAIVERHG 920

Query: 790 GKFYIFSTPAKGTLIEIIF 808
           G+    +    GT   +  
Sbjct: 921 GQIGFVTASGVGTTFYVDL 939



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 62/153 (40%), Gaps = 8/153 (5%)

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK-PFT 498
           TR  +R+ E ++  L  +   T + + I +R+G I   N   +++ GY ++++  + P  
Sbjct: 196 TRRARREAE-QLRMLSLVARHTDNAVIITDRDGRIEWVNEGFTRISGYTLDEVRGRKPGE 254

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CY 554
                 T       + + L     ++++   +  TK+ +   L + I  +         +
Sbjct: 255 FLQGPETDPATVARIRQALDNG--ESVKAEIVNYTKQGRPYWLALNISPVYDDQHNLIRF 312

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
                DI++ K+ +  L  A K +    +   +
Sbjct: 313 IAIESDITQQKEMERMLRAALKESRDVMNALDE 345


>gi|170741139|ref|YP_001769794.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium sp. 4-46]
 gi|168195413|gb|ACA17360.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium sp. 4-46]
          Length = 1000

 Score =  409 bits (1051), Expect = e-111,   Method: Composition-based stats.
 Identities = 173/611 (28%), Positives = 290/611 (47%), Gaps = 26/611 (4%)

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
            E +   ++ + E                  + +            L   ++        
Sbjct: 400 PETRPEPAAGDGEAGRRPEAAGHDETPAPAAEPAPEVP-RPLAPGQLSLNEHAAFREIAR 458

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
            L  +             +      +     +                  GE      +D
Sbjct: 459 ILGARFAGDAPQDGPSPARDAEEAPRRAGAVTPFPALALARAPERGPSTAGE--VARVLD 516

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL---------DAPKLSDN 378
           + PI   V+    +  AN + L L  Y+S + +  AGG  +L                  
Sbjct: 517 RLPIGILVHQGEEVLLANRALLCLADYESAEALTAAGGAGSLFRGRDPASLAVGEGDPAG 576

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
            A  PV+L       +  +A L  ++W    +  +      + +              ++
Sbjct: 577 GADHPVVLATRTGEALPVAAVLTPVEWGGAPASLLALRRLPEEDPARHLRAA------EL 630

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
           +    + ++        ++L+A +DG+  ++  G +++ N+  + LFG+   ++  +  T
Sbjct: 631 ERARQEARLRESE----AVLDAVTDGVVTLDERGRVIALNKGAAALFGHEPREVSGEDLT 686

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM 558
           V   Q+    +   L    + +   T     + +   E +L+L +          +S+ +
Sbjct: 687 VLFAQDGRPAIRAALERARAGEPASTE----VAAEGGEPILALTLAPLAQEEPRRFSVLL 742

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            D+S  ++ + +L  AK+ AE  SS KSDFLA +SHEIRTPL AI+GF+EV+  ++FGP+
Sbjct: 743 RDVSAARRTEAELLRAKRAAEAASSQKSDFLATISHEIRTPLNAILGFTEVMMEEQFGPI 802

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
           GN RY +Y   I  SG  V+ +V DLLD++KIE+G ++LHF  V L++ V  ++SL+Q  
Sbjct: 803 GNERYRDYLRDIRSSGEHVVSLVTDLLDLAKIEAGHLDLHFTGVVLNDLVGASVSLMQPQ 862

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738
           A  +R+++RTSFAN +  +L D RS++Q ALN+++NAI FT +GGQ+I+ST  T    V 
Sbjct: 863 AARQRVVVRTSFANGLRPVLGDQRSLRQAALNLIANAIKFTDAGGQVIVSTAMTDRGGVA 922

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           LRVRDTG+GMT  E+E A++PF Q+  +Q  RG GTGLGLPL KA+V+AN G   + S  
Sbjct: 923 LRVRDTGIGMTPDEVETALQPFRQVATAQNRRGRGTGLGLPLTKALVEANRGTLRVSSRK 982

Query: 799 AKGTLIEIIFP 809
            +GTL+E++FP
Sbjct: 983 HEGTLVEVLFP 993



 Score =  108 bits (271), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 70/512 (13%), Positives = 138/512 (26%), Gaps = 26/512 (5%)

Query: 78  PIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL 137
                +RF W  DA G + E +E L   +G      +G    ++        ++ +   L
Sbjct: 149 TGAAPMRFLWRSDAEGRIVEATEALTGLVGRTP---LGRSWAELLADTVQGTSDDLAAAL 205

Query: 138 KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRV--DNDPRA 195
             + T+     LW  +GT   V +DL+  P     R F+GF GFG++  +RV      RA
Sbjct: 206 AARRTFRALPVLWRFDGTERGVAVDLSGAPRLGEGRAFAGFSGFGVIRPDRVAPMPPARA 265

Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255
                         +     +   E+    +   PPP   +    S      A    ++ 
Sbjct: 266 AAPAKPSLRERAAAVIAIGRASAPEEPGRAATWEPPPVPELPAFASLAGATLAGFAGMMA 325

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
                          ++E        +  +          S E     +       +   
Sbjct: 326 ATPLNAFGLGWPFCLDEEGSAEPPTRKDAEPVAAAAAPRASAEPVAQAAPEPVVQAAPEP 385

Query: 316 DEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
                         P      + G+                    E A  +   L   +L
Sbjct: 386 PLAPPEPDAAPSPGPETRPEPAAGDGEAGRRPEAAGHDETPAPAAEPAPEVPRPLAPGQL 445

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
           S N       + R      A  A           S A       +        P   +  
Sbjct: 446 SLNEHAAFREIARILGARFAGDA------PQDGPSPARDAEEAPRRAGAVTPFPALALAR 499

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
                     ++         +L+    GI +   E  +L  NRA+  L  Y   + L  
Sbjct: 500 APERGPSTAGEVAR-------VLDRLPIGILVHQGE-EVLLANRALLCLADYESAEALT- 550

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555
                   +     +     +   D     +   + +T+  + L +  ++  + +    +
Sbjct: 551 --AAGGAGSLFRGRDPASLAVGEGDPAGGADHPVVLATRTGEALPVAAVLTPVEWGGAPA 608

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
             +      ++   +       A +    + +
Sbjct: 609 SLL----ALRRLPEEDPARHLRAAELERARQE 636



 Score = 43.9 bits (102), Expect = 0.10,   Method: Composition-based stats.
 Identities = 35/323 (10%), Positives = 79/323 (24%), Gaps = 21/323 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D  G +  +++      G+   ++ G    D++ +   D    I   L+R     G+  
Sbjct: 656 LDERGRVIALNKGAAALFGHEPREVSG---EDLTVLFAQDGRPAIRAALER--ARAGEPA 710

Query: 149 LWPIEGTNLYVPIDLAALPI-YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
              +        + L   P+     R FS      ++          A   R  +     
Sbjct: 711 STEVAAEGGEPILALTLAPLAQEEPRRFS-----VLLRDVSAARRTEAELLRAKRAAEAA 765

Query: 208 HEIKKGHSSVEKEKYDIFSQQ-SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
              K    +    +             + M+ +   +                  + S  
Sbjct: 766 SSQKSDFLATISHEIRTPLNAILGFTEVMMEEQFGPIGNERYRDYLRDIRSSGEHVVSLV 825

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD--------EG 318
           + L +       +L+ +        L   S    +  + R    +   F         + 
Sbjct: 826 TDLLDLAKIEAGHLDLHFTGVVLNDLVGASVSLMQPQAARQRVVVRTSFANGLRPVLGDQ 885

Query: 319 ENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYK-SVDDIEIAGGLSTLLDAPKLSD 377
            +L    ++           G     + +          V D  I      +  A +   
Sbjct: 886 RSLRQAALNLIANAIKFTDAGGQVIVSTAMTDRGGVALRVRDTGIGMTPDEVETALQPFR 945

Query: 378 NNAIKPVMLYRSDRTCIAASARL 400
             A       R     +  +  L
Sbjct: 946 QVATAQNRRGRGTGLGLPLTKAL 968


>gi|298247304|ref|ZP_06971109.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
            racemifer DSM 44963]
 gi|297549963|gb|EFH83829.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
            racemifer DSM 44963]
          Length = 1110

 Score =  409 bits (1050), Expect = e-111,   Method: Composition-based stats.
 Identities = 105/770 (13%), Positives = 242/770 (31%), Gaps = 44/770 (5%)

Query: 55   TDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI 114
            TD +++  +      SE  +         +  W     G ++  ++      G+     +
Sbjct: 365  TDIDEQKRAQQQLKTSEENWRGLAETVP-QLVWTTSPDGRVEYWNQRWYTYTGSSLEHAL 423

Query: 115  GMRLCDVSDILHIDPNNHIGD-LLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNR 173
            G                 +    L+    +           T  Y    + A+P+    R
Sbjct: 424  GHEWSQFLPPDEYQHTLTVWHHALETGEPYE-IEYRLKEGQTGGYRWFLVRAMPVRDDTR 482

Query: 174  EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH 233
            +    + FG               K   +    L E                        
Sbjct: 483  QIV--KWFGTCTDIDDRKQAEQQLKESREHLRVLAETVPQLVWSTGPDGLTEDWNQRFAD 540

Query: 234  L--RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINL---NQYTKKQY 288
                   ++           +     +     S E+  P + ++                
Sbjct: 541  YFQATPEQLRGYGWRQFLHPEEYDHVRAVRDRSLETGEPYEIEYRLREGKTGLYRWFLAR 600

Query: 289  FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE----TVDKCPIPFFVYS-HGNLFY 343
               +++ + +  ++             ++   ++ +      +  P   +     G   Y
Sbjct: 601  ALPVRDEAGQILKWFGTATDIDEQKQVEQQLKISEQNWRVLAETVPQLVWTVRPDGQHEY 660

Query: 344  ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403
             N  +   T   +++ ++           P   ++                    RL   
Sbjct: 661  TNQRWHDYTG-STLEHMQSDQWAHLQFIHPDDREDTRA-LWQHALDTGAMYDHEERLRES 718

Query: 404  QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
            Q                 +   + +   G   +  D +  +  +     ++ +++++   
Sbjct: 719  QT--GLYRWFLVRGMPVRDDTGQIVKWFGTCTDIEDQKCIEEALRQSQERIRALIDSNII 776

Query: 464  GIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVF--LEQNTPSVMNHYLTEILSLD 520
            GI  +   E +++  N A   + GY  ED+  +  +           +    L EI +  
Sbjct: 777  GIVSVEGEENVLVEANEAYLHMTGYTQEDVRSRTLSAESTTPPEQAPLFQRALQEITARG 836

Query: 521  LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH-DISEWKQEKNKLSHAKKIAE 579
                LE   +   K+   L + +            ++   D S  K+ + +         
Sbjct: 837  QHTPLETELVC--KDGSRLPVLVGGVIFQERPRLMVSFVLDNSARKELEQR--------- 885

Query: 580  KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639
                 K  F++  SHE+R PL A+   ++ +  +R             + ++     +  
Sbjct: 886  -----KDAFISMASHELRNPLAALKMQTQ-LVQKRLERQSLHEAATALSRVEGPVKQLER 939

Query: 640  IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA 699
            ++ +LLD+SKI++G++    E V LD  + E    +Q  +    I++R +  +    ++ 
Sbjct: 940  LIGELLDVSKIQAGRLEYRQETVDLDALLHEVADTMQQLSTTHTIVVRGAAPH---LLVG 996

Query: 700  DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKP 759
            D   + Q+  N++SNAI ++P    + I  + +    V + V D G+G+   + +K  + 
Sbjct: 997  DKDRLGQVFTNLISNAIKYSPDTEAVEIDLSASEE-TVTISVHDHGLGIPREQRDKIFER 1055

Query: 760  FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            F +    +Q    G G+GL +   +V  + G   + ST  KG+   +  P
Sbjct: 1056 FYRATGPRQRAIPGLGMGLYIVAEIVKRHEGTITVDSTVGKGSTFTVTLP 1105



 Score =  127 bits (319), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 51/522 (9%), Positives = 120/522 (22%), Gaps = 33/522 (6%)

Query: 79  IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK 138
                 F + ID    +   +      +G     + G      +  L            K
Sbjct: 23  ETLPGAFFF-IDDAATIVYANASAQAMLGAPLEALRGNNFWRCAPYLVSTTLYQAVRKTK 81

Query: 139 RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFR-GFGIVHVNRVDNDPRALG 197
           +         + P+    L+V       P         G    F  V       +    G
Sbjct: 82  QARALTEVEYVSPVTQALLHV----HLAP------TVGGLTLQFHEVREPIWRQEIFPQG 131

Query: 198 KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257
           +RL          + G  + E    DI +       +R +  +               ++
Sbjct: 132 ERLCIDDLDGLHTRIGILTPEGIVLDINAVPLDDAQVRREEVIGKPLAEAPWWSSSPGSQ 191

Query: 258 KYPLLTSEESSLPEQEDFHTI----NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
           +        +S  E   F            + +       +   +    +      +   
Sbjct: 192 EQLRAAIARASTGETAHFEAQLCPREGIVLSSESVITPHLDADHQVEYLVIAGIDITARK 251

Query: 314 YFDEGENLTPETVDKCPIPFFVYSHGNLFY-ANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
             +         +D  P   +           N  +   T   +    E A G   +   
Sbjct: 252 RAERE---IHALIDAIPQLVWTGRPDGYVDSYNQRWRDYTGLST----EQAQGNGWMQCT 304

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
                   ++                RL                     +     +   G
Sbjct: 305 HPADRQRVLEVWQNAVQTGRPYETEQRLRQHTT--GEYRWFLMQAVPFKDAQGTILKYIG 362

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
              +  + +  +++++        + E     +   + +G +   N+      G  +E  
Sbjct: 363 TCTDIDEQKRAQQQLKTSEENWRGLAETVPQLVWTTSPDGRVEYWNQRWYTYTGSSLEHA 422

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE-EKLLSLRIIIKKLPFS 551
           L   ++ FL  +            L        E        +        +    +   
Sbjct: 423 LGHEWSQFLPPDEYQHTLTVWHHALETGEP--YEIEYRLKEGQTGGYRWFLVRAMPVRDD 480

Query: 552 SC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
           +     +  T  DI + KQ + +L  +++     +      +
Sbjct: 481 TRQIVKWFGTCTDIDDRKQAEQQLKESREHLRVLAETVPQLV 522



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 39/279 (13%), Positives = 77/279 (27%), Gaps = 32/279 (11%)

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIA 363
             N                  ++  P   FF+     + YAN S   +     ++ +   
Sbjct: 1   MSNAKQSKRLTLASSGTLLTMLETLPGAFFFIDDAATIVYANASAQAMLG-APLEALRGN 59

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
                   AP L      + V   +  R                         P  +A  
Sbjct: 60  NFW---RCAPYLVSTTLYQAVRKTKQARALTEVE----------------YVSPVTQALL 100

Query: 424 FPENMPQNGIEPEDVDTRIN---KRKMEIEVMQLCSI--LEATSDGIAIINREGIILSTN 478
                P  G              ++++  +  +L  I  L+     I I+  EGI+L  N
Sbjct: 101 HVHLAPTVGGLTLQFHEVREPIWRQEIFPQGERL-CIDDLDGLHTRIGILTPEGIVLDIN 159

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR-QTLEKITLGSTKEEK 537
                      E+++ KP       ++       L   ++     +T         +E  
Sbjct: 160 AVPLDDAQVRREEVIGKPLAEAPWWSSSPGSQEQLRAAIARASTGETAHFEAQLCPREGI 219

Query: 538 LLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLS 572
           +LS   +I     +        +   DI+  K+ + ++ 
Sbjct: 220 VLSSESVITPHLDADHQVEYLVIAGIDITARKRAEREIH 258


>gi|298675081|ref|YP_003726831.1| multi-sensor signal transduction histidine kinase [Methanohalobium
           evestigatum Z-7303]
 gi|298288069|gb|ADI74035.1| multi-sensor signal transduction histidine kinase [Methanohalobium
           evestigatum Z-7303]
          Length = 747

 Score =  409 bits (1050), Expect = e-111,   Method: Composition-based stats.
 Identities = 128/502 (25%), Positives = 216/502 (43%), Gaps = 22/502 (4%)

Query: 312 SAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
                E EN     VD  P   F +  HGN    NP+   +T+Y   + + +        
Sbjct: 248 EEDLKESENKFRSYVDYAPFWIFVIDRHGNYVDVNPTASSMTEYTMNELLSMNIV----- 302

Query: 371 DAPKLSDNNAIKPVMLY-RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
               L  ++A + V L         + S  L  I  N +  + +        +       
Sbjct: 303 ---DLHPSDAYEQVNLVFNELVDTGSISTELPFITKNGDRRIWIVEAVKLNED------R 353

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
             G   +  + +I + K++    +  +++E  +D I + + +G IL  N    +  GY  
Sbjct: 354 FLGFTTDITERKIEEDKVKESEQRFRTLIEHAADAIIVHDFDGNILYVNELACESLGYIK 413

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK-- 547
           + +L    T F       V         S D    +   T     +  +  + + + +  
Sbjct: 414 DKLLSMNVTDFDPYVDVDVFRDKYWNKTSPDTSYLV--ETYHKRSDGTIYPVEVRLTRID 471

Query: 548 LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
           L         + DI+  KQ ++ L +AK  A   +  KSD +A VSHE+RTPLT IIGFS
Sbjct: 472 LGGKPAILGFVRDITMQKQTEDNLVYAKMEAYAANQAKSDMIANVSHELRTPLTTIIGFS 531

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
           +V+   + G L N    +Y + I   G  + +I+N++LD+SKI+SG++++  E +++ E 
Sbjct: 532 DVLLKGKAGDL-NDSQEKYLSKIHDRGQQLHNIINEMLDLSKIDSGELDVSCEYIAVHEL 590

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727
                S V   A++K + I T     +  I AD   +K I  N+L N++ FT  G  I I
Sbjct: 591 FENLKSNVYPIASKKGLTIETKINQRVDYIYADELKLKHILYNLLYNSVKFTDDGS-ITI 649

Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
                 N      V D+G+G+ N +L +  +PF Q+      +  GTGLGL L K +V+ 
Sbjct: 650 KLDLDENNNYKFSVVDSGIGIPNEKLNQIFEPFKQLDTGTSRKYSGTGLGLTLVKRLVEL 709

Query: 788 NMGKFYIFSTPAKGTLIEIIFP 809
           + G  ++ S    G+      P
Sbjct: 710 HGGNIWVESEVGTGSKFTFTIP 731



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 23/158 (14%), Positives = 59/158 (37%), Gaps = 6/158 (3%)

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
           + +  +  ++    +  S ++     I +I+R G  +  N   S +  Y + ++L     
Sbjct: 243 ELKKREEDLKESENKFRSYVDYAPFWIFVIDRHGNYVDVNPTASSMTEYTMNELLSMNIV 302

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM 558
                +    +N    E++      T E   +    + ++  +  +         +    
Sbjct: 303 DLHPSDAYEQVNLVFNELVDTGSIST-ELPFITKNGDRRIWIVEAVKL---NEDRFLGFT 358

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
            DI+E K E++K+  +++       H +D  A + H+ 
Sbjct: 359 TDITERKIEEDKVKESEQRFRTLIEHAAD--AIIVHDF 394



 Score = 48.1 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 29/251 (11%), Positives = 66/251 (26%), Gaps = 12/251 (4%)

Query: 69  DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID 128
           +SEN F          + + ID HG   +++            +++ M + D+      +
Sbjct: 253 ESENKFRSYVDYAPF-WIFVIDRHGNYVDVNPTASSMTEYTMNELLSMNIVDLHPSDAYE 311

Query: 129 PNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNR 188
             N + + L    +   +       G +  + I  A      R      F GF       
Sbjct: 312 QVNLVFNELVDTGSISTELPFITKNG-DRRIWIVEAVKLNEDR------FLGF--TTDIT 362

Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSSLTEY 246
                    K  +++F  L E       V     +I             +K+K+ S+   
Sbjct: 363 ERKIEEDKVKESEQRFRTLIEHAADAIIVHDFDGNILYVNELACESLGYIKDKLLSMNVT 422

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
                  +   +               + +    +           + +       L   
Sbjct: 423 DFDPYVDVDVFRDKYWNKTSPDTSYLVETYHKRSDGTIYPVEVRLTRIDLGGKPAILGFV 482

Query: 307 NHPSLSAYFDE 317
              ++    ++
Sbjct: 483 RDITMQKQTED 493



 Score = 43.1 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 17/137 (12%), Positives = 44/137 (32%), Gaps = 7/137 (5%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTT 148
           D  G +  ++E   +++G    K++ M + D    + +D   +   +      ++  +T 
Sbjct: 393 DFDGNILYVNELACESLGYIKDKLLSMNVTDFDPYVDVDVFRDKYWNKTSPDTSYLVETY 452

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +GT   V + L  + +  +     GF     V    +             +    +
Sbjct: 453 HKRSDGTIYPVEVRLTRIDLGGKP-AILGF-----VRDITMQKQTEDNLVYAKMEAYAAN 506

Query: 209 EIKKGHSSVEKEKYDIF 225
           + K    +    +    
Sbjct: 507 QAKSDMIANVSHELRTP 523


>gi|21229307|ref|NP_635229.1| two component system histidine kinase [Methanosarcina mazei Go1]
 gi|20907888|gb|AAM32901.1| Two component system histidine kinase [Methanosarcina mazei Go1]
          Length = 892

 Score =  409 bits (1050), Expect = e-111,   Method: Composition-based stats.
 Identities = 117/521 (22%), Positives = 206/521 (39%), Gaps = 45/521 (8%)

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIA 363
           +            E +       +       + +   +   N          + +     
Sbjct: 79  ALVLQEKTEESLKEKDKRYRALFEHSNDAIIILNGEKVLDLNKKGREAFGLGAREL--DN 136

Query: 364 GGLSTLLDAPKLSDNN-----------AIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
             + +LL    L               A   +   + +   I        +         
Sbjct: 137 ISIGSLLSEKDLPAVRDALKTTLENGSACFEMKFRKQNGEVIDVEVSSSFLSLEEGEIQC 196

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE- 471
           +                      +    +  ++       +L  I++    GI +++   
Sbjct: 197 VA--------------------RDITTRKKAEKNERESRERLKKIIDNALCGILLVDAST 236

Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
             I+  N A  +  G P   +       F+               ++   +   +   + 
Sbjct: 237 HEIVDANPAAVEAIGLPGHRLTGNVCHKFICPVEEGKCP------ITDFKQSVDKSERML 290

Query: 532 STKEEKLLSL--RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
              + +   +   ++  K+  +     +  D+SE K+ + +L  AK  AE  +  KS+FL
Sbjct: 291 LNGKGESFPVLKSVVPVKIGENEYLIESFIDLSERKKTEEELLQAKLAAESANRAKSEFL 350

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
             +SHE+RTPLTAIIGFS+V+     G     +  ++ N I  SG  +L ++N++LD+SK
Sbjct: 351 TNMSHELRTPLTAIIGFSDVMLGGISGEFS-EQNKKFLNNIANSGKHLLTLINNILDLSK 409

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709
           IE+GKM L FE  S+ E  ++  ++    A +K I ++ +  + I  + AD    KQI  
Sbjct: 410 IEAGKMELEFEMFSVSEVFNDTRAVTSALALKKDISMKYNVDSEIL-VYADRVRFKQIIY 468

Query: 710 NILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
           N++SNAI FTP  G +I+S   T +  V + V DTG+G++    +   +PF QI  S   
Sbjct: 469 NLVSNAIKFTPDRGSVIVSALKTED-SVRISVSDTGIGISEENQKLLFQPFRQIDASINR 527

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             EGTGLGL L K  V+ + G+ +  S P KG+  E   PL
Sbjct: 528 HYEGTGLGLALVKKFVNLHGGRVWAESEPGKGSTFEFELPL 568



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/173 (14%), Positives = 58/173 (33%), Gaps = 8/173 (4%)

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
                +E   V     +  ++ +  +  ++ E ++D I I+N E  +L  N+   + FG 
Sbjct: 71  RRWMELENALVLQEKTEESLKEKDKRYRALFEHSNDAIIILNGE-KVLDLNKKGREAFGL 129

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
              ++        L +     +   L   L                +  +++ + +    
Sbjct: 130 GARELDNISIGSLLSEKDLPAVRDALKTTLENGSAC---FEMKFRKQNGEVIDVEVSSSF 186

Query: 548 LP-FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE--SSHKSDFLARVS-HEI 596
           L            DI+  K+ +     +++  +K   ++     L   S HEI
Sbjct: 187 LSLEEGEIQCVARDITTRKKAEKNERESRERLKKIIDNALCGILLVDASTHEI 239


>gi|197119641|ref|YP_002140068.1| PAS domain-containing sensor histidine kinase response regulator
           [Geobacter bemidjiensis Bem]
 gi|197089001|gb|ACH40272.1| sensor histidine kinase response regulator, PAS domain-containing
           protein [Geobacter bemidjiensis Bem]
          Length = 919

 Score =  409 bits (1050), Expect = e-111,   Method: Composition-based stats.
 Identities = 119/639 (18%), Positives = 233/639 (36%), Gaps = 28/639 (4%)

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244
             +           R+ ++ + +       +S   +  +   +    P     +    L 
Sbjct: 43  RQSDDAVRRSEEQLRISQRIARIGSWDLDLASGRLDCSEELCRIFSVPLDEAPDNYDGLL 102

Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
                              +   S   +         +    +     +++S  +   +S
Sbjct: 103 AILPEYGKDALAAAVEEALAGRDSFAVEYSVERPGGKESFLFEVGEVFRDDSGAALRVVS 162

Query: 305 HRNHPSLSAYFDEG---ENLTPETVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDI 360
                S     +     EN     ++  P   F+    ++    N SF      +  D  
Sbjct: 163 VVQDVSEQKEAENALFFENRYRGLIENLPQRIFLKDCNSVYLSCNSSFARDLGVEPSDVF 222

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
                    L AP+L+             D   +A  A +   +    +   ++      
Sbjct: 223 GK---TDYDLFAPELAKKRQED-------DGKVMAGGAAVERDEQRERDGAWISKALIPL 272

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
            +         GI  +    +  + ++     +  SI E  + GI  +   G ++  NR 
Sbjct: 273 RDDNDRVYALLGILTDITFRKRAEEQLRESEERFRSIFEQAAVGICHLTLSGELIRINRR 332

Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
              + GY  E++L       +  +           +LS ++             ++  + 
Sbjct: 333 FCDILGYEQEELLGWSLEQTIHPDDREAEQRQAARLLSREID-NYSIEIRQMRHDDTPVW 391

Query: 541 LRII----IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
           + +               +  + D++  ++ + +L H + + +  S  KS FLA + HEI
Sbjct: 392 VNLTKSLVCGPKGEPKYLAGIIEDVTANREAE-ELRHERDLVQAASRAKSQFLANMGHEI 450

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTPL A++G S +          + +   Y   I  S   +L+I+ND+LD SK+E+GK+ 
Sbjct: 451 RTPLNAVMGLSRLALKTEL----DRKQRGYLEKIGSSSRTLLNIINDILDFSKMEAGKLE 506

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNA 715
           L    ++L E +     + Q  A EK I  R   A ++P  ++ D   + Q+  N+++NA
Sbjct: 507 LEKTDLNLYEVLGNISDMHQSKAQEKGIEFRVRLAPDLPNKLVGDPLRLTQVLNNLIANA 566

Query: 716 IHFTPSGGQII-ISTTHTSNEEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           + FT  G  ++ I       EEV+    V+DTG+G+   ++ K   PF Q  +S   R  
Sbjct: 567 VKFTEKGEVVVAIKPLRREEEEVVVHFCVQDTGIGIAPEQMGKIFTPFTQADSSTTRRYG 626

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
           GTGLGL +++ +V+   G+  + S P  G+      PL 
Sbjct: 627 GTGLGLSISRQLVELMGGELQVESVPGSGSSFSFTVPLA 665



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/352 (11%), Positives = 88/352 (25%), Gaps = 26/352 (7%)

Query: 34  FETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHG 93
           FE  +  +++        S   D +++  +  N L  EN +         R  +  D + 
Sbjct: 144 FEVGEVFRDDSGAALRVVSVVQDVSEQKEAE-NALFFENRYRGLIENLPQR-IFLKDCNS 201

Query: 94  YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIE 153
                +    + +G     + G    D+               +        +      +
Sbjct: 202 VYLSCNSSFARDLGVEPSDVFGKTDYDLFAPELAKKRQEDDGKVMAGGAAVERDEQRERD 261

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
           G      I  A +P+   N     +   GI+             +  +++F  + E    
Sbjct: 262 G----AWISKALIPLRDDNDRV--YALLGILTDITFRKRAEEQLRESEERFRSIFEQAAV 315

Query: 214 HSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLK--TEKYPLLTSEESS 268
                    ++               +  +    E   H DD      +   LL+ E  +
Sbjct: 316 GICHLTLSGELIRINRRFCDILGYEQEELLGWSLEQTIHPDDREAEQRQAARLLSREIDN 375

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
              +      +            +     E  +YL+       +    E      + V  
Sbjct: 376 YSIEIRQMRHDDTPVWVNLTKSLVCGPKGE-PKYLAGIIEDVTANREAEELRHERDLVQA 434

Query: 329 CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
                          A   FL    ++    +    GLS L    +L     
Sbjct: 435 AS------------RAKSQFLANMGHEIRTPLNAVMGLSRLALKTELDRKQR 474


>gi|330507467|ref|YP_004383895.1| multi-sensor hybrid histidine kinase [Methanosaeta concilii GP-6]
 gi|328928275|gb|AEB68077.1| multi-sensor hybrid histidine kinase [Methanosaeta concilii GP-6]
          Length = 1090

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 140/783 (17%), Positives = 272/783 (34%), Gaps = 94/783 (12%)

Query: 89  IDAHGY--------LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ 140
           +D  G             ++   ++       +       +              +L   
Sbjct: 185 LDEEGRDQISLGYEWISGNDGDARSAKIRHPDLSYEAYSSI---------PQWFQILSGG 235

Query: 141 NTWYGKTTLWPIEGTNLYVPIDLAAL------PIYSRNREFSGFRGFGIVHVNRV----- 189
              +G+T   P        P++   +      PI++ +R F GF GF    + R      
Sbjct: 236 MPIWGRTRDLPPSARG---PLETMGVRSFMIVPIFTTDR-FWGFIGFEDYRLERDWSWSV 291

Query: 190 ----------------DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS---P 230
                                +  +  ++K+  L E              I         
Sbjct: 292 AFILMTMASAIGGFIGRFKAESALRESEEKYRELVETSSSVIIRVDTSGAIRFINKFGLH 351

Query: 231 PPHLRMKNKVSSLTEYYAHKDDV----LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKK 286
                 ++ +                 LK     +  + E       +    N       
Sbjct: 352 FFGYNEEDILGRNVTETIFPPGGIGCNLKAIIGHIRENPEECSTHIAENIRSNGELVWIA 411

Query: 287 QYFGTLQNNSKESFEYLSHRNHP-----------SLSAYFDEGENLTPETVDKCPIPFFV 335
                +QN   E  E L   N              ++A   E  +     +     P  V
Sbjct: 412 WAHRLVQNERGEVVEVLCIGNDITEKKRSSEELKRVAADLRETRDYLDNLLSHANAPIIV 471

Query: 336 YSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394
           +     +   N +F  LT +++ + +  + G+  L       ++       + R+     
Sbjct: 472 WDPNFCITRFNHAFERLTGWRADEVLGRSLGI--LFPD----ESRTESFAYIERTLSGES 525

Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
             +  +     N E    +              +       +  + ++ + ++  +    
Sbjct: 526 WNAVEIPICHQNGEVRTVLWNSANIYDEAGRRVIATIAQGQDITERKMAEERVAFQ---- 581

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF-TVFLEQNTPSVMNHYL 513
            S+L+   + +   + +G I+  NR    L+ +  E++L        L       +    
Sbjct: 582 ASLLDQVRNAVIATDFDGRIIYWNRFAESLYQWKAEEVLGASIKDTILPPEMKYNVEMVT 641

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKN 569
            EIL+      LE   L   K+        I   +  +            D++E K+ + 
Sbjct: 642 KEILAKG---YLECEYLVKRKDGSRFPASYIFSTICDNRQRRIGIISVSTDLTERKKVEQ 698

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
            L  AK+ AE  +  KS+FLA +SHEIRTP+ A+IGF+ ++ N     +      +Y   
Sbjct: 699 DLRDAKERAESATKAKSEFLANMSHEIRTPMNAVIGFTSLLLNTNIDSV----QRDYIET 754

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I  SG+ +L +++D+LD SKIE G M L  E + L E +  +++LV   A+ K + +   
Sbjct: 755 IHSSGDSLLKVISDILDFSKIEGGMMELEKERIDLIECLETSLNLVAEDASRKGLSVSYE 814

Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTT---HTSNEEVILRVRDTG 745
               +PR ++ D+  ++QI +N+L NA+ FT  G  + +  +        E+  RV D+G
Sbjct: 815 VEPQVPRYLMGDMTRLRQILVNLLGNAVKFTDKGF-VRLDVSALPVEDGHEIQFRVTDSG 873

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G++   + +  + F Q+  S   +  GTGLGL + K + +   G  +  S P +G+   
Sbjct: 874 IGISQDRMSRLFQSFSQVDASTTRKYGGTGLGLAICKHLAELMGGGIWAESVPGEGSSFY 933

Query: 806 IIF 808
              
Sbjct: 934 FTI 936



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 36/388 (9%), Positives = 95/388 (24%), Gaps = 32/388 (8%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH------IDPNNHIGDLLKRQN 141
            +D  G ++ I++      G     ++G  + +                 HI +  +  +
Sbjct: 335 RVDTSGAIRFINKFGLHFFGYNEEDILGRNVTETIFPPGGIGCNLKAIIGHIRENPEECS 394

Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
           T   +            V I  A   + +   E        I +            KR+ 
Sbjct: 395 THIAENIRSN----GELVWIAWAHRLVQNERGEVVEV--LCIGNDITEKKRSSEELKRVA 448

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQS------PPPHLRM---KNKVSSLTEYYAHKDD 252
                  +      S       ++                     ++V   +      D+
Sbjct: 449 ADLRETRDYLDNLLSHANAPIIVWDPNFCITRFNHAFERLTGWRADEVLGRSLGILFPDE 508

Query: 253 VLKTEKY--PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES-FEYLSHRNHP 309
                        S ES    +      N    T       + + +       ++     
Sbjct: 509 SRTESFAYIERTLSGESWNAVEIPICHQNGEVRTVLWNSANIYDEAGRRVIATIAQGQDI 568

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
           +     +E        +D+           G + Y N     L ++K+ + +  A    T
Sbjct: 569 TERKMAEERVAFQASLLDQVRNAVIATDFDGRIIYWNRFAESLYQWKAEEVL-GASIKDT 627

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
           +L      +   +   +L +               + +       ++I     +     +
Sbjct: 628 ILPPEMKYNVEMVTKEILAKG-----YLECEYLVKRKDGSR-FPASYIFSTICDNRQRRI 681

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCS 456
               +  +  + +  ++ +     +  S
Sbjct: 682 GIISVSTDLTERKKVEQDLRDAKERAES 709



 Score = 43.5 bits (101), Expect = 0.17,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 16/34 (47%)

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
                S LE   DGI I +  G IL +N A  ++
Sbjct: 4   ERMFQSTLEILEDGICICDPSGEILYSNPAAERM 37


>gi|196228199|ref|ZP_03127066.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
 gi|196227602|gb|EDY22105.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
          Length = 1248

 Score =  407 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 124/737 (16%), Positives = 258/737 (35%), Gaps = 44/737 (5%)

Query: 95  LKEISEELPKTIGN-YAFKMIGMRLCDVSDILHIDPN------NHIGDLLKRQNTWYGKT 147
           + + +    + +G      ++ + +  +S     D          I  +L+ +     + 
Sbjct: 106 IIDCNVAAVRMLGFESKEALLTVPMSSLSPESQPDGAKSMERAAEIRRVLREKGRHTCEW 165

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
            L    G  + V I L  + +  R  +        + H      +  A  +  +++F   
Sbjct: 166 NLRRKGGDEMTVEITLTVVELMGRTVQL------AVWHDLTERKEAEAALRESEERFQAF 219

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHL-----RMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
                  + ++ E   +        H            +        K   L      +L
Sbjct: 220 MNHSPVLAFIKDENGRMLYINEVMEHRFQMKLEDIFGKTDFDWLPHDKATRLTAVDREVL 279

Query: 263 TSEESS--LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
            S      + E      +       K   GT           +             + E 
Sbjct: 280 ASGLPQQLIEEVPTPDGVMHEWLVMKFSMGTSDGAKMLGGVAIDVGEQRRAERALQQSER 339

Query: 321 LTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
              E  D  P+ +        +   N + L +  Y  ++++        L+         
Sbjct: 340 HFRELFDDAPVAYHELDLENRITRVNATELNMLGY-RLEEMVGRPVTEFLI-------GE 391

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
                +   +    +   A   + +      + +        +   +         +   
Sbjct: 392 YTGTTVQQPAVGDPLH-EAFERSFRRKDGRRVPVLMRQRVMTDAAGKICGTRATLQDISA 450

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
            +  + ++     +  SI E   +GI     EG  +S N A++++ GY   D L    T 
Sbjct: 451 LKRKELELRDAEEKYRSIFENAIEGIFQTTPEGSYMSVNPALAEICGYESPDELTSKITH 510

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YS 555
             +Q             + L+     +  +    ++  ++ +    + +         Y 
Sbjct: 511 IAKQLYVRPGRRAEFTAMMLEKGAVKDFESQIYRRDRSIIWISERARAVRDQDGKLLYYE 570

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
            T+ DI+  ++  + +  A+  A + +  KS+FLA +SHEIRTP+  IIG + ++ +   
Sbjct: 571 GTVEDITARRETDDAIKKARDAALESARLKSEFLANMSHEIRTPMNGIIGMTGLLLDTEL 630

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
            P    +  ++   I  S + +L I+ND+LD SKIE+G +        L   V  ++ L+
Sbjct: 631 SP----KQRDFTQTISSSADALLTIINDILDFSKIEAGMLAFEEIDFQLGTVVEGSVELL 686

Query: 676 QLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
              A  + I + +   +++P  +  D   ++Q+  N++ NA+ FT  G ++++      N
Sbjct: 687 AARAASREIELASLVYHDVPTNLRGDPGRLRQVLTNLIGNAVKFTDKG-EVVVRANCQEN 745

Query: 735 EE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
            E    +   V DTG+G+++   E+  +PF Q   S   R  GTGLGL + K +V    G
Sbjct: 746 AETHTTIRFSVTDTGIGISSEAQERLFQPFVQADGSTTRRFGGTGLGLAICKQLVARMGG 805

Query: 791 KFYIFSTPAKGTLIEII 807
           +  + S   KG+     
Sbjct: 806 EIGVTSEAGKGSTFWFT 822



 Score = 74.3 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 33/228 (14%), Positives = 71/228 (31%), Gaps = 18/228 (7%)

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
           D E       L       +  A K + L R              I  N E       +  
Sbjct: 3   DFESVRDSEWLTLWKDECEVEARKALTLAR---ESQTGQFLGSCIAANGERKHW-DVVLT 58

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
              +   +      +  +  D R  +        +   I E +SD   + +++  I+  N
Sbjct: 59  TINDAAGKPEKLLAVSRDVTDRRAAE-------EKFRIIFEQSSDAHLLFSKD-SIIDCN 110

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPS------VMNHYLTEILSLDLRQTLEKITLGS 532
            A  ++ G+  ++ L       L   +             +  +L    R T E      
Sbjct: 111 VAAVRMLGFESKEALLTVPMSSLSPESQPDGAKSMERAAEIRRVLREKGRHTCEWNLRRK 170

Query: 533 TKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
             +E  + + + + +L   +      HD++E K+ +  L  +++  + 
Sbjct: 171 GGDEMTVEITLTVVELMGRTVQLAVWHDLTERKEAEAALRESEERFQA 218



 Score = 71.2 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 36/385 (9%), Positives = 96/385 (24%), Gaps = 19/385 (4%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D +G +  I+E +          + G    D            +   +            
Sbjct: 231 DENGRMLYINEVMEHRFQMKLEDIFGKTDFDWLPHDKATRLTAVDREVLASGLPQQLIEE 290

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
            P     ++  + +      S   +  G     +    R +   +   +   + F     
Sbjct: 291 VPTPDGVMHEWLVMKFSMGTSDGAKMLGGVAIDVGEQRRAERALQQSERHFRELFDD-AP 349

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
           +      +E     + + +      R++  V      +   +    T + P +       
Sbjct: 350 VAYHELDLENRITRVNATELNMLGYRLEEMVGRPVTEFLIGEYTGTTVQQPAVGDP-LHE 408

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE----T 325
             +  F   +  +         + + + +     +     S     +       E     
Sbjct: 409 AFERSFRRKDGRRVPVLMRQRVMTDAAGKICGTRATLQDISALKRKELELRDAEEKYRSI 468

Query: 326 VDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
            +      F     G+    NP+   +  Y+S D++     ++ +     +      +  
Sbjct: 469 FENAIEGIFQTTPEGSYMSVNPALAEICGYESPDELTSK--ITHIAKQLYVRPGRRAEFT 526

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN- 443
            +                I     + + ++       +Q  + +   G   +    R   
Sbjct: 527 AMMLEKGAVKDFE---SQIYRRDRSIIWISERARAVRDQDGKLLYYEGTVEDITARRETD 583

Query: 444 -----KRKMEIEVMQLCS-ILEATS 462
                 R   +E  +L S  L   S
Sbjct: 584 DAIKKARDAALESARLKSEFLANMS 608



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 39/424 (9%), Positives = 110/424 (25%), Gaps = 32/424 (7%)

Query: 69  DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID 128
            SE  F        V +   +D    +  ++      +G    +M+G  + +     +  
Sbjct: 336 QSERHFRELFDDAPVAYH-ELDLENRITRVNATELNMLGYRLEEMVGRPVTEFLIGEY-T 393

Query: 129 PNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNR 188
                   +        + +    +G    VP+ +    +     +  G R    +    
Sbjct: 394 GTTVQQPAVGDPLHEAFERSFRRKDGR--RVPVLMRQRVMTDAAGKICGTR--ATLQDIS 449

Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL---RMKNKVSSLTE 245
                    +  ++K+  + E           +    S       +      ++++S   
Sbjct: 450 ALKRKELELRDAEEKYRSIFENAIEGIFQTTPEGSYMSVNPALAEICGYESPDELTSKIT 509

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLP---EQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302
           + A +  V    +                +   +  + +     +    +++   +   Y
Sbjct: 510 HIAKQLYVRPGRRAEFTAMMLEKGAVKDFESQIYRRDRSIIWISERARAVRDQDGKLLYY 569

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEI 362
                  +     D+      +               + F AN S  + T       +  
Sbjct: 570 EGTVEDITARRETDDAIKKARD------AALESARLKSEFLANMSHEIRTP------MNG 617

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
             G++ LL   +LS         +  S    +     +          LA   I F+   
Sbjct: 618 IIGMTGLLLDTELSPKQRDFTQTISSSADALLTIINDILDFSKIEAGMLAFEEIDFQLGT 677

Query: 423 QFPENMPQNGIEPEDVDTRINK-------RKMEIEVMQLCSILEA-TSDGIAIINREGII 474
               ++          +  +           +  +  +L  +L     + +   ++  ++
Sbjct: 678 VVEGSVELLAARAASREIELASLVYHDVPTNLRGDPGRLRQVLTNLIGNAVKFTDKGEVV 737

Query: 475 LSTN 478
           +  N
Sbjct: 738 VRAN 741


>gi|332702022|ref|ZP_08422110.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332552171|gb|EGJ49215.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 946

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 128/763 (16%), Positives = 261/763 (34%), Gaps = 47/763 (6%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVS------DILHI-----DPNNHIGDLLKR 139
               ++ IS             ++G    +V           +     D    I  +   
Sbjct: 56  PDASIRAISRHGLSLFDRPREAILGCTGPEVIKEWKVFHPDGVTQAEYDELPLIRAMTNG 115

Query: 140 QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199
           ++    +  +   +G    +P+ + A PI  +    +G  G                 + 
Sbjct: 116 EDVREEEWIILRPDG--KKIPVLINAGPIRGKEGTITG--GVLAWIETEKRKQLEEALRE 171

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH--LRMKNKVSSLTEYYAHKDDVLKTE 257
            + ++    E  +    +   +  I +            + ++              +  
Sbjct: 172 SEARYRSFFEASRDVVLLTSPEGSILAANKAAQEMYGATEEELIEKGRQVFVDTSDPRLG 231

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQ---YFGTLQNNSKESFEYLSHRNHPSLSAY 314
            +    +   S   +      +   +  +     F T+    + +               
Sbjct: 232 AFLEERTRTGSARGEYRSRRKDGTLFPTEASSGVFTTMDGILRTTTILRDITERKRAEQA 291

Query: 315 FDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
             E E+L    +D  P+  F+    G +   NP+   +        ++          A 
Sbjct: 292 LRESEDLLSRVLDALPVGVFIADAQGGIARVNPAGERIWGGARRAPLDRLDEYKG-WWAD 350

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
                 A +       +R   + +  +    ++      +        +     +    +
Sbjct: 351 SGRRIEAREWAFARAFERGETSMNEIIDIECFDGARKT-IRNAAVPVRDASGRIISAIAV 409

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
             +    R  +  +    +Q  ++ E + D I   + +   L  N ++    G P E   
Sbjct: 410 IEDISAERRAQEALRNREVQYRALAENSPDMIVRYSPDLHYLYVNPSIEHAVGIPPEAFK 469

Query: 494 RKPFTVF-LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII-IKKLPFS 551
            K      L ++    +   +  +      QTLE     S   +   ++      +    
Sbjct: 470 GKRIGQLGLPKDLQCSIAKAVHAVRKTGQEQTLEWSWETSVGTKHFQTMFAPEASRDGGV 529

Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
                   +I+  ++ +  L  A+  AE+ +  KS FLA +SHEIRTP+  I+G  E+  
Sbjct: 530 DSVLTISREITSLRRLEEDLRRARDAAEEANRAKSQFLANMSHEIRTPMNGIMGMVELAL 589

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
                   + R  EY  Y   S   +LDIVND+LD+SKIE+G+M L        E +   
Sbjct: 590 MGC----KDARSREYLGYAKNSAVNLLDIVNDILDLSKIEAGRMELEKSVFRPREMLESL 645

Query: 672 ISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQ---III 727
            ++    A +K +  +T    N+P R++ D   ++QI  N++ NA+ +T  G     +  
Sbjct: 646 FAIQGSQAEQKGLRFKTHVDPNVPKRLVGDEGRLRQILTNLVGNAVKYTREGEVAVFVTA 705

Query: 728 STTHTSNEE----------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
                  E+          ++  +RDTG+G+   +L +  +PF +   +Q     GTGLG
Sbjct: 706 EVLKQDQEQGEHRRADLVSLVFSIRDTGIGIAPDKLPRIFEPFTR--GAQDAEFGGTGLG 763

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820
           L + K +V+   G+  + ST  +G+   +   L  T+ P + I
Sbjct: 764 LTITKQLVELMNGRIDVRSTLGQGSTFTVSL-LLQTA-PKEAI 804



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 45/386 (11%), Positives = 92/386 (23%), Gaps = 43/386 (11%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ---NTWYG 145
               G +   ++   +  G    ++I         +     +  +G  L+ +    +  G
Sbjct: 190 TSPEGSILAANKAAQEMYGATEEELIEKGRQ----VFVDTSDPRLGAFLEERTRTGSARG 245

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFG----IVHVNRVDNDPRALGKRLD 201
           +      +GT           P  + +  F+   G      I+             +  +
Sbjct: 246 EYRSRRKDGTLF---------PTEASSGVFTTMDGILRTTTILRDITERKRAEQALRESE 296

Query: 202 KKFSH----------LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD 251
              S           + + + G + V      I+      P  R+        +    + 
Sbjct: 297 DLLSRVLDALPVGVFIADAQGGIARVNPAGERIWGGARRAPLDRLDEYKGWWADSG-RRI 355

Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
           +  +          E+S+ E  D    +  + T +     +++ S      ++     S 
Sbjct: 356 EAREWAFARAFERGETSMNEIIDIECFDGARKTIRNAAVPVRDASGRIISAIAVIEDISA 415

Query: 312 SAYFDEGEN----LTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGL 366
                E             +  P     YS   +  Y NPS                 G 
Sbjct: 416 ERRAQEALRNREVQYRALAENSPDMIVRYSPDLHYLYVNPSIEHAVGIPPEAFKGKRIGQ 475

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
             L   PK    +  K V   R                          F P    +   +
Sbjct: 476 LGL---PKDLQCSIAKAVHAVRKTGQEQTLEW--SWETSVGTKHFQTMFAPEASRDGGVD 530

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVM 452
                 I  E    R  +  +     
Sbjct: 531 --SVLTISREITSLRRLEEDLRRARD 554



 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 50/162 (30%), Gaps = 13/162 (8%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILR----- 494
           R    + E     L SI E   +G+ I    +  I + +R    LF  P E IL      
Sbjct: 26  RKRLAEAEKSEQLLKSIFEYIPEGLIIAEVPDASIRAISRHGLSLFDRPREAILGCTGPE 85

Query: 495 --KPFTVFLEQNTPSVMNHYLTEILS-LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
             K + VF            L  I +  +     E+  +    + K + + I    +   
Sbjct: 86  VIKEWKVFHPDGVTQAEYDELPLIRAMTNGEDVREEEWIILRPDGKKIPVLINAGPIRGK 145

Query: 552 SCY----SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
                   L   +  + KQ +  L  ++           D +
Sbjct: 146 EGTITGGVLAWIETEKRKQLEEALRESEARYRSFFEASRDVV 187



 Score = 48.1 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 24/260 (9%), Positives = 60/260 (23%), Gaps = 20/260 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGM-----RLCDVSDILHIDPNNHIGDLLKRQ 140
            +  DA G +  ++    +  G      +            S               +R 
Sbjct: 310 VFIADAQGGIARVNPAGERIWGGARRAPLDRLDEYKGWWADSGRRIEAREWAFARAFERG 369

Query: 141 NTWYGKTTLWP-IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199
            T   +       +G      I  AA+P+   +          ++     +   +   + 
Sbjct: 370 ETSMNEIIDIECFDG--ARKTIRNAAVPVRDASGRII--SAIAVIEDISAERRAQEALRN 425

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP-------PPHLRMKNKVSSLTEYYAHKDD 252
            + ++  L E                            PP      ++  L      +  
Sbjct: 426 REVQYRALAENSPDMIVRYSPDLHYLYVNPSIEHAVGIPPEAFKGKRIGQLGLPKDLQCS 485

Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
           + K       T +E +L         ++     +  F    +        L+     +  
Sbjct: 486 IAKAVHAVRKTGQEQTLEW---SWETSVGTKHFQTMFAPEASRDGGVDSVLTISREITSL 542

Query: 313 AYFDEGENLTPETVDKCPIP 332
              +E      +  ++    
Sbjct: 543 RRLEEDLRRARDAAEEANRA 562


>gi|310640534|ref|YP_003945292.1| sensor protein [Paenibacillus polymyxa SC2]
 gi|309245484|gb|ADO55051.1| Sensor protein [Paenibacillus polymyxa SC2]
          Length = 891

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 137/738 (18%), Positives = 247/738 (33%), Gaps = 46/738 (6%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150
           A G L+ IS  + K +G    +M+G +      I   D     G   +       K  + 
Sbjct: 156 ADGILQYISPSVEKLLGYTKQEMLGKKRLQFYHIEDADYMRVHGMFKETG---IMKRRVR 212

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK--FSHLH 208
             +G   Y+ ++++   I     +    R   I               +  +   F    
Sbjct: 213 HKDGH--YLWLEVSYRIIRDEQGKIK--RVLSIGRNITERQKSEENLAKAQQLAMFGSWD 268

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
                +     +++         P     +           +          L    E +
Sbjct: 269 WDLVNNVMHFSKEFRSIFGYRVKPVETSIDAFMKAVHPEDTERMKQIINNVILKGIHEET 328

Query: 269 LPE--QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
                  +     L    + +         +          H  +     E EN      
Sbjct: 329 FYRIVLPNGEQKVLRSIWEAEMDEHAGKPVQVVGMIQDVTEHREIEQRLRESENRYKSLF 388

Query: 327 DKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
              P+     +  G++   NPS   LT Y   + +      + +L      + + IK  +
Sbjct: 389 QHNPLGICAMNMEGHILSVNPSLEKLTGYTRDELLG-----TEILVMASSEEQDKIKRHI 443

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
                       +    I    E       +         E +   GI       +    
Sbjct: 444 EMAKQGETQTYESEF--IHKEGER--LFIKMTNIPIFVQEEIVGCYGIIENVTPLKNYIA 499

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           ++E    +   IL A S+GI  +N EG +   N A  ++FG    + L       +    
Sbjct: 500 QIEKLSNEHSLILNAVSEGIVGLNTEGHVRFMNPAAVEMFGIGSANPLNGSCIDVIRHAD 559

Query: 506 P-----SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLT 557
                       + + +        E+      K+         I  L  +       + 
Sbjct: 560 EIGSHFPDEQASILQAIRSGASYQAEEAVFWK-KDGSSFLASYRISPLMDNGERKGAVMV 618

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
             D +     + ++  AK+ AE+    KS+FL+ +SHE+RTP+  IIG + ++ +     
Sbjct: 619 FVDRT----NEKEIIRAKESAERADRAKSEFLSVMSHELRTPMNGIIGMAGLLADTEL-- 672

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
             +     Y + I  S N ++ I+N++LD+SKIE+GKM+L  E   L++ V     L   
Sbjct: 673 --DEEQRSYIDIITSSSNALMQILNEILDLSKIEAGKMSLLHESFVLEDVVGSVADLFMT 730

Query: 678 YANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
            A EK I +       +P  ++ D   ++QI +N++SNAI FT  G  + I     +   
Sbjct: 731 QAMEKGIQLEWHVDQEMPGMLVGDHVRIRQILVNLVSNAIKFTERG-HVNIFVERKAYSR 789

Query: 737 ------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
                 +   V DTG+G+         +PF Q+  +   +  GTGLGL + K +V    G
Sbjct: 790 RKKKCLIEFSVTDTGIGIPADRQHLLFQPFSQLHPALNRKYGGTGLGLSICKNLVKLMGG 849

Query: 791 KFYIFSTPAKGTLIEIIF 808
              + S  A+G       
Sbjct: 850 SIGVDSDEARGATFRFQL 867



 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 63/570 (11%), Positives = 160/570 (28%), Gaps = 38/570 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD----LLKRQNTWY 144
           +   G    ++    K +G    +++ +R   +      D           L      + 
Sbjct: 25  LSREGKCLYVNPAFCKMVGYEQEELLDIRYYHLLYNEAQDQQGLREAYAGWLKATDQVYK 84

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            +  L    GT +++ ++L    I+        +             D   +    +  +
Sbjct: 85  TELRLKHKRGTTVWLSLELT---IFDDEATEQSYL-IAYAMDVTEKKDMEQVLSDNEDLY 140

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
             + E      S       +         L    K   L +       +   +   +   
Sbjct: 141 MLITENTPDVISYSTADGILQYISPSVEKLLGYTKQEMLGKKRLQFYHIEDADYMRVHGM 200

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
            + +   +      + +    +  +  +++   +    LS   + +     +E      +
Sbjct: 201 FKETGIMKRRVRHKDGHYLWLEVSYRIIRDEQGKIKRVLSIGRNITERQKSEENLAKAQQ 260

Query: 325 TVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
                    + +    N+ + +  F  +  Y+          +   + A    D   +K 
Sbjct: 261 L---AMFGSWDWDLVNNVMHFSKEFRSIFGYRVKPV---ETSIDAFMKAVHPEDTERMKQ 314

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
           ++        I        +  N E  +  +    E      + +   G+  +  + R  
Sbjct: 315 IINNVIL-KGIHEETFYRIVLPNGEQKVLRSIWEAEMDEHAGKPVQVVGMIQDVTEHREI 373

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
           ++++     +  S+ +    GI  +N EG ILS N ++ KL GY  +++L     V    
Sbjct: 374 EQRLRESENRYKSLFQHNPLGICAMNMEGHILSVNPSLEKLTGYTRDELLGTEILVMASS 433

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDIS 562
                +  ++  +      QT E   +    E   + +  I   +          + +++
Sbjct: 434 EEQDKIKRHIE-MAKQGETQTYESEFIHKEGERLFIKMTNIPIFVQEEIVGCYGIIENVT 492

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSD------------FLARVSHEI-----RTPLTAIIG 605
             K    ++           +  S+            F+   + E+       PL     
Sbjct: 493 PLKNYIAQIEKLSNEHSLILNAVSEGIVGLNTEGHVRFMNPAAVEMFGIGSANPLNG--S 550

Query: 606 FSEVIKN-QRFGPLGNPRYIEYANYIDRSG 634
             +VI++    G             I    
Sbjct: 551 CIDVIRHADEIGSHFPDEQASILQAIRSGA 580



 Score =  113 bits (284), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 50/341 (14%), Positives = 111/341 (32%), Gaps = 32/341 (9%)

Query: 314 YFDEGENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
              +   L     +  P    +    G   Y NP+F  +  Y+  + ++I      L + 
Sbjct: 3   SAAQRLPLLEHMYNHAPTGIVILSREGKCLYVNPAFCKMVGYEQEELLDIRY-YHLLYNE 61

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
            +             ++         RL   +     ++ ++       ++  E      
Sbjct: 62  AQDQQGLREAYAGWLKATDQVYKTELRLKHKR---GTTVWLSLELTIFDDEATEQSYLIA 118

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
              +  + +  ++ +         I E T D I+    +GI+   + +V KL GY  +++
Sbjct: 119 YAMDVTEKKDMEQVLSDNEDLYMLITENTPDVISYSTADGILQYISPSVEKLLGYTKQEM 178

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
           L K    F        M       +    ++T         K+   L L +  + +    
Sbjct: 179 LGKKRLQFYHIEDADYMR------VHGMFKETGIMKRRVRHKDGHYLWLEVSYRIIRDEQ 232

Query: 553 C----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH---EIRTPLTAIIG 605
                      +I+E ++ +  L+ A+++A   S    D +  V H   E R    +I G
Sbjct: 233 GKIKRVLSIGRNITERQKSEENLAKAQQLAMFGSWDW-DLVNNVMHFSKEFR----SIFG 287

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYID-RSGNLVLDIVNDLL 645
           +       R  P+       +   +       +  I+N+++
Sbjct: 288 Y-------RVKPVETS-IDAFMKAVHPEDTERMKQIINNVI 320



 Score = 42.3 bits (98), Expect = 0.31,   Method: Composition-based stats.
 Identities = 12/140 (8%), Positives = 41/140 (29%), Gaps = 17/140 (12%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFK-------MIGMRLCDVSDILHIDPNNHIGDLLKRQN 141
           ++  G+++ ++    +  G  +          +     ++      D    I   ++   
Sbjct: 522 LNTEGHVRFMNPAAVEMFGIGSANPLNGSCIDVIRHADEIGSHF-PDEQASILQAIRSGA 580

Query: 142 TW-YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVH-----VNRVDNDPRA 195
           ++   +   W  +G++      ++  P+   N E  G     +       + R       
Sbjct: 581 SYQAEEAVFWKKDGSSFLASYRIS--PLMD-NGERKGAVMVFVDRTNEKEIIRAKESAER 637

Query: 196 LGKRLDKKFSHLHEIKKGHS 215
             +   +  S +    +   
Sbjct: 638 ADRAKSEFLSVMSHELRTPM 657


>gi|119899974|ref|YP_935187.1| putative hybrid sensor and regulator protein [Azoarcus sp. BH72]
 gi|119672387|emb|CAL96301.1| putative hybrid sensor and regulator protein [Azoarcus sp. BH72]
          Length = 1208

 Score =  407 bits (1046), Expect = e-111,   Method: Composition-based stats.
 Identities = 118/631 (18%), Positives = 234/631 (37%), Gaps = 39/631 (6%)

Query: 197 GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256
             R            +   +   +       + P     M   ++  ++    + +  + 
Sbjct: 189 PLRRMLGALERVRSFEADQARGSDSGRELIDEVPEEFRPMFEVLARTSDSLRRELEAREK 248

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
               L     + LP                     ++  ++   E ++ R          
Sbjct: 249 TLASLRALLGTILPADAPAGGAP---------LDDIETVTRAIGELVAEREAGRRELDHQ 299

Query: 317 EGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
           +        +D+  I       G + YAN  F  ++ Y   + +    G S  +      
Sbjct: 300 KFA------LDQHGIVSITDRAGLITYANDRFCEISGYSREELL----GASHRIVKSDYH 349

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
                  +              +  T          ++       +          I  +
Sbjct: 350 PPEFYADMWRTIRGGRVWHGEIKNRTKS---GEPFWVSATIVPLPDADGVPERFISIRTD 406

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             + +  + ++  ++     +LE+    I + + +G  L  NRA  +++G   E    + 
Sbjct: 407 ITERKDIEARLAEQLHFTELLLESIPTAIYLKDADGRYLRFNRAFEEMYGIDREKWYGRR 466

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST----KEEKLLSLRIIIKKLPFSS 552
               +  +   +M+    E+L     Q+ E   +       ++      R+  +     +
Sbjct: 467 VLELVPGDEGRLMHKKDLELLQEGGHQSYEARIVNRRTGQHRDGLFWKARLT-RADGTVT 525

Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
                + DI++ K+ + +L  A+++AE  S  KSDFLA +SHEIRTP+  IIG +E+  +
Sbjct: 526 GLVGAVIDITDRKRVEQELESARQLAEAASQAKSDFLANMSHEIRTPMNGIIGMTELALD 585

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
            R     +P   +Y N +  S   +L IVND+LD SKIE+GK+ +     +   AV+EA+
Sbjct: 586 TRL----DPTQRDYLNIVLSSAESLLVIVNDILDFSKIEAGKLAIEEIDFNPAVAVTEAL 641

Query: 673 SLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
             +   A  K++      + ++P ++  D   ++Q+  N+  NA+ FT +G +I +    
Sbjct: 642 KSISTRAERKKLRFAYELSPDLPAVVAGDSGRIRQVLTNLCDNALKFTKAG-EIAVRVRA 700

Query: 732 TSNEE------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
             +            V DTG+G+   +  +  + F Q   S   R  GTGLGL ++  +V
Sbjct: 701 EPSAAGGDALIAHFEVSDTGIGIDPEQQAQIFEAFTQADTSTTRRFGGTGLGLTISARLV 760

Query: 786 DANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
               G+ ++ STP  G+       L   + P
Sbjct: 761 GLMGGRIWVDSTPGVGSTFHFTVRLKRRAEP 791



 Score = 70.4 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/250 (8%), Positives = 55/250 (22%), Gaps = 10/250 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH-IDPNNHIGDLLKRQNTWYGKT 147
            D  G +   ++   +  G    +++G     V    H  +    +   ++    W+G+ 
Sbjct: 312 TDRAGLITYANDRFCEISGYSREELLGASHRIVKSDYHPPEFYADMWRTIRGGRVWHGEI 371

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                 G      +    +P+   +      R   I        D  A           L
Sbjct: 372 KNRTKSGEPF--WVSATIVPLPDADGVPE--RFISIRTDITERKDIEARLAEQLHFTELL 427

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
            E       ++               +   ++               +         E  
Sbjct: 428 LESIPTAIYLKDADGRYLRFNRAFEEMYGIDREKWYGRRVLELVPGDEGRLMHKKDLELL 487

Query: 268 SLPEQEDFHTINLNQYTKKQYFG-----TLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
                + +    +N+ T +   G      L          +      +     ++     
Sbjct: 488 QEGGHQSYEARIVNRRTGQHRDGLFWKARLTRADGTVTGLVGAVIDITDRKRVEQELESA 547

Query: 323 PETVDKCPIP 332
            +  +     
Sbjct: 548 RQLAEAASQA 557



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/256 (8%), Positives = 53/256 (20%), Gaps = 18/256 (7%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL-HIDPNNHIGDLLKRQNTWYGKTT 148
           DA G     +    +  G    K  G R+ ++         +    +LL+       +  
Sbjct: 439 DADGRYLRFNRAFEEMYGIDREKWYGRRVLELVPGDEGRLMHKKDLELLQEGGHQSYEAR 498

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           +     T  +         +   +   +G  G  I              +   +      
Sbjct: 499 IVNRR-TGQHRDGLFWKARLTRADGTVTGLVGAVI--DITDRKRVEQELESARQLAEAAS 555

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           + K    +    +                     +       D  L   +   L    SS
Sbjct: 556 QAKSDFLANMSHEIRTPMN-------------GIIGMTELALDTRLDPTQRDYLNIVLSS 602

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
                      L+    +     ++         ++       +    +      E    
Sbjct: 603 AESLLVIVNDILDFSKIEAGKLAIEEIDFNPAVAVTEALKSISTRAERKKLRFAYELSPD 662

Query: 329 CPIPFFVYSHGNLFYA 344
            P        G +   
Sbjct: 663 LP-AVVAGDSGRIRQV 677


>gi|71909751|ref|YP_287338.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
 gi|71849372|gb|AAZ48868.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
          Length = 916

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 116/622 (18%), Positives = 231/622 (37%), Gaps = 26/622 (4%)

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
            + + + L    +   +  +  +    +       R+             +   L+    
Sbjct: 17  SEAELADLLASIRTAGTTLEPAFRGILEGLGDLLSRVDASYEQYERDLELRTRSLEISSA 76

Query: 260 PLLTSEESSLPEQEDFHTINLNQY-TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
            L  + E              +   T + +      +++   E         ++A   E 
Sbjct: 77  ELSAANEKLRQSLAGRDNALRSLRKTIRDHLPEANEDAETLAEEDIAVLSRRVAAMVAES 136

Query: 319 ENLTPET------VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
           E+   E       +D+  I     + G + YAN  F  ++ Y   + I      +  +  
Sbjct: 137 EHGLRELANQKFALDQHAIVSITDTAGIITYANDRFCAISGYAREELIGQ----NHRIVN 192

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
             +      + +                        +   +        +   E      
Sbjct: 193 SGIHPPELFRDMWHTIVLGKVWHGEVCNRA---RDGHLYWVNATVVPLLDAKGEPERYIA 249

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
           I  E  D +  + ++  ++  +  ++E     I + +  G  +  NRA  + F    E  
Sbjct: 250 IRTEITDRKRMEAQLSEQLHLVEELIENIPLPIYLKDGSGRYIRLNRAFEQFFEVRREAF 309

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK--EEKLLSLRIIIKKLPF 550
           + +     L             ++ +    QT E           E +    ++ ++   
Sbjct: 310 IGRTLHDLLPAEDARQHAEMDADLFAAKGTQTYEATVHSQDGIAHETIYRKAVLTRRDGS 369

Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
            S     + DI++ K+ + ++  AK+ AE  +  KSDFLA +SHEIRTP+  +IG +++ 
Sbjct: 370 VSGLLGIIVDITDRKRAEIEVLRAKEAAEAANRAKSDFLANMSHEIRTPMNGVIGMTDLA 429

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
                         EY N    S   +L ++ND+LD SKIE+GK+ +   P  L   +++
Sbjct: 430 LETAL----TEEQREYLNIAKSSAESLLTVINDILDFSKIEAGKLQVEDIPFDLHRLIAD 485

Query: 671 AISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
            +  + L A+EK I I +   +++PR +  D   ++Q+ +N++ NAI FT  G +I +  
Sbjct: 486 TLKPLALRAHEKDIEILSDVVHDVPRFVKGDPSRIRQVLVNLVGNAIKFTEQG-EIALQA 544

Query: 730 TH----TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
                   +  +   VRDTG+G++  +       F Q  +S   +  GTGLGL + + +V
Sbjct: 545 DLMQLQNGHAVIHFAVRDTGIGISADKQMLIFDAFAQEDSSTTRKYGGTGLGLSICRRLV 604

Query: 786 DANMGKFYIFSTPAKGTLIEII 807
           +   G  ++ S P KG+     
Sbjct: 605 ELMGGTLWLHSEPGKGSTFHFS 626



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/251 (10%), Positives = 56/251 (22%), Gaps = 13/251 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV---SDILHIDPNNHIGDLLKRQNTWYG 145
            D  G +   ++      G    ++IG     V        +  +     +L     W+G
Sbjct: 159 TDTAGIITYANDRFCAISGYAREELIGQNHRIVNSGIHPPELFRDMWHTIVL--GKVWHG 216

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +      +G      ++   +P+     E    R   I           A          
Sbjct: 217 EVCNRARDGHLY--WVNATVVPLLDAKGEPE--RYIAIRTEITDRKRMEAQLSEQLHLVE 272

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPH----LRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
            L E       ++                    R      +L +    +D     E    
Sbjct: 273 ELIENIPLPIYLKDGSGRYIRLNRAFEQFFEVRREAFIGRTLHDLLPAEDARQHAEMDAD 332

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
           L + + +   +   H+ +   +        L          L      +     +     
Sbjct: 333 LFAAKGTQTYEATVHSQDGIAHETIYRKAVLTRRDGSVSGLLGIIVDITDRKRAEIEVLR 392

Query: 322 TPETVDKCPIP 332
             E  +     
Sbjct: 393 AKEAAEAANRA 403


>gi|157960457|ref|YP_001500491.1| multi-sensor hybrid histidine kinase [Shewanella pealeana ATCC
            700345]
 gi|157845457|gb|ABV85956.1| multi-sensor hybrid histidine kinase [Shewanella pealeana ATCC
            700345]
          Length = 1765

 Score =  405 bits (1042), Expect = e-110,   Method: Composition-based stats.
 Identities = 136/755 (18%), Positives = 263/755 (34%), Gaps = 52/755 (6%)

Query: 93   GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT---- 148
            G L   +    +  G    +M+ M + ++      + +  +      +            
Sbjct: 529  GQLVFTNSRCQRLFGYDEQQMLAMSVDELVPEAVREQHADLRAQFVAEGQDRKMGLGKSL 588

Query: 149  -LWPIEGTNLYVPIDLAALPIYSR-NREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                 +G    V I L  LPI     R+ +       V    ++ +     K  + +F  
Sbjct: 589  KARKSDGGEFPVEICLGLLPIADDGQRQVA-----ATVRDMTLELEIAQQIKDSESRFRG 643

Query: 207  LHEIKKGHSSVEKEKYDIFSQQSP---------PPHLRMKNKVSSLTEYYAHKDDVLKTE 257
            L     G     +       +            P    ++N   S       +D    T+
Sbjct: 644  LVANIPGAVYRTRVGDSWVMEYISSNISDITGFPASDFIENSHRSFASLIIEQDLAATTQ 703

Query: 258  KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
                   ++ S   Q      + + +   +    + N+   +  +    N  + S    E
Sbjct: 704  AIEQALLKQKSFEVQYRIKHRDGSIHWVHEKGKAIYNDDGVALWFDGSINDITSSKLAQE 763

Query: 318  ----GENLTPETVDKCPIPFFVYS-----HGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
                 +       +  P   +             + + + +    +   + +        
Sbjct: 764  KIAQSQQQLETITESIPSTVYQLHWCNNKDRTFTFLSSACITTLGFHRDEVMSNFD---- 819

Query: 369  LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
             L A  +        +       +           +    +   +              +
Sbjct: 820  -LVAECIISEERSHIIEALSGKSSKGLQWTEEFRYRHPIGDIRWLQAGAQGDLQADGCII 878

Query: 429  PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
              NG   +  D +     +E       ++ +    GI  ++  G IL  N   S      
Sbjct: 879  -WNGYLMDITDRKQIDMDLEDREAHFRALFDNAGIGIVNVDERGNILDCNEQFSLYMQTD 937

Query: 489  VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            V  +  + F  F   +          +++       L        +  + + + I + KL
Sbjct: 938  VAHLKSRSFFDFQHNDDRDKARSVFAKLIEGGSDNILT-ELRLLNQSGECMWMDITLTKL 996

Query: 549  PFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
                       L+M +I+  KQ    L  AK  A+  +  KSDFLA +SHEIRTP+ AII
Sbjct: 997  QDKHGKLTSVVLSMANITSLKQLSVALKQAKDSADAANQAKSDFLANMSHEIRTPMNAII 1056

Query: 605  GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
            G S++          + +   Y   IDR+   +L I+ND+LD SKIE+GK+++      L
Sbjct: 1057 GMSQLCLQTEL----DAKQQNYIQKIDRASKSLLGIINDILDFSKIEAGKLDIESVDFQL 1112

Query: 665  DEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG 723
            D  + +   +  + A++KR+ +  + A NIPR +L D   + Q+ +N+++NAI FT  G 
Sbjct: 1113 DTLLEDLSDMFSVKASDKRLELLFAVAPNIPRHLLGDPLRLSQVLINLMNNAIKFTEQG- 1171

Query: 724  QIIIST----THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
            ++++S         +  +   VRD G+G+T  +  +  K F Q   S   +  GTGLGL 
Sbjct: 1172 EVLLSISQLERVEDDIVLRFSVRDNGIGLTEEQRNRLFKSFSQADTSTTRKYGGTGLGLA 1231

Query: 780  LAKAMVDANMGKFYIFSTPAKGTL--IEIIFPLYD 812
            ++K +V+   G+  + S    G+     +   + D
Sbjct: 1232 ISKQLVELMGGEIGVESQFGNGSTFFFSVRLKVAD 1266



 Score = 75.4 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 42/373 (11%), Positives = 101/373 (27%), Gaps = 34/373 (9%)

Query: 231 PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG 290
                      +L                 L    E        F      +  K +   
Sbjct: 299 EFFRDFTALSLNLILLSILLLLTGYITSRRLTRPIEELEAGIVAFGAGETKRIAKPRGAA 358

Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF---VYSHGNLFYANPS 347
           +      + F  ++       +A  D   N   + +D      F   V   G L   +  
Sbjct: 359 SEIATLTDKFNEMAEVLEEREAALLDSRGNRFAKLIDGMSDKSFYCSVAPDGLLDQVSDG 418

Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
              +      + ++            ++  +N I  +     DR  +  +   H I+   
Sbjct: 419 VEKVLGVAP-ELLKRKY--------QRMFSDNPINELNWQYMDRALLGENVPPHQIEMLD 469

Query: 408 E--NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465
                  +        +   + +    +  +  +                ++LE+  + +
Sbjct: 470 GFGKLRRLDVFMQPLLSDNQQLLSIEMLFNDVTEQFSAVAWS-------NAVLESAPEAM 522

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ-- 523
            I+   G ++ TN    +LFGY  + +L       + +           + ++    +  
Sbjct: 523 LIVEESGQLVFTNSRCQRLFGYDEQQMLAMSVDELVPEAVREQHADLRAQFVAEGQDRKM 582

Query: 524 TLEKITLGSTKEEKLLSLRII----IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579
            L K       +     + I               + T+ D++       +L  A++I +
Sbjct: 583 GLGKSLKARKSDGGEFPVEICLGLLPIADDGQRQVAATVRDMT------LELEIAQQIKD 636

Query: 580 KESSHKSDFLARV 592
            ES  +   +A +
Sbjct: 637 SESRFRG-LVANI 648


>gi|297568619|ref|YP_003689963.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296924534|gb|ADH85344.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 1263

 Score =  405 bits (1042), Expect = e-110,   Method: Composition-based stats.
 Identities = 134/789 (16%), Positives = 267/789 (33%), Gaps = 67/789 (8%)

Query: 67  YLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI--GMRLCDVSDI 124
             +     VF P    V F W  +    +  +S  + + +G    +++  G R  D+   
Sbjct: 6   QSEPGWEHVFFPGGPVVLFVWRPEPGWPVHYVSPNVEQILGYSPSEILAPGFRFSDLVHP 65

Query: 125 LHIDP-NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI 183
             +   N+ +   L R  T Y +         +     D   +P Y    +     G+  
Sbjct: 66  DDMGAINDEVATFLARGETTYEQHYRLRTRSGDYRWFHDYT-VPEYDDQGKPRLISGY-- 122

Query: 184 VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL 243
           +     ++  R   K  + +F  L E+    + +   +  +  Q +   H ++       
Sbjct: 123 ILDRTEEHRAREQLKERESRFRTLFELYPDATVLIDPESGLPVQFNRLAHEQLGYTAEEF 182

Query: 244 TEYYAHKDDVLK------TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297
                   + L+           +          +      +L           L+  + 
Sbjct: 183 ARLRIPDYEALETPAETGAHIQAIFERGHDDFETRHRRKDGSLIDVRVSVVLLNLEGQTL 242

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKS 356
               +       + S   +          +   +  + Y   +     +     L     
Sbjct: 243 FLAVFRDITEEKAASRELERSRERLALATESAELGIWDYDMASGHLEWDDGMFRLYGIAP 302

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
            D     G       A    ++          +  +      R+  ++        +   
Sbjct: 303 AD----FGHSFEDWAAALTPESREAAVAAFQAAVSSDRPFDIRMVILRAADGAIRTLHGQ 358

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEI-----------------------EVMQ 453
                +     +   G+  +  +   N+R +                         +  +
Sbjct: 359 AQIIRDGSGTPVRVVGVNRDVTEEEENRRHLAAFFAQSLSGFFFMMLDEPVDWQGADEEE 418

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
             ++L+       +++ +  I   N+A+   +G    D++                    
Sbjct: 419 KEALLD------YVMDHQ-RITMVNQAMLDQYGATERDLIGMTAREMFAH-DLEHGRFIW 470

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS----LTMHDISEWKQEKN 569
             +          +       +   + +      L              HD++E KQ++ 
Sbjct: 471 KGLFDQGRWHVETRE---QRLDGTPIIIDGDYICLYDEQGRVTGHFGVQHDVTERKQQQE 527

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
            L  A++ AE+ S  KS+FLA +SHEIRTP+ A+IG S+++         N    +    
Sbjct: 528 ALEQARREAERASRAKSEFLANMSHEIRTPMNAVIGLSQLLAQTEL----NEEQRDQVRK 583

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I +S  ++L I+ND+LD SKIESG++ L      L+E V +  +L     +   + +   
Sbjct: 584 IHQSSRMLLGIINDILDFSKIESGRLELECRDFRLNEVVEQVATLFGDKVHAGGLELLYD 643

Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-----TSNEEVILRVRD 743
              ++PR ++ D   + QI +N+LSNA  FT  GG + +              +   VRD
Sbjct: 644 IPPHLPRTLVGDSLRLSQILVNLLSNATKFTERGGTVELGIRVVAPVANDQATLRFHVRD 703

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TG+GM+  +L +  +PF Q   S   R  GTGLGL +++ +V+   G+  + S P KG+ 
Sbjct: 704 TGIGMSKEQLARLFRPFSQADTSTTRRYGGTGLGLVISRRLVEKMGGELEVESAPGKGST 763

Query: 804 --IEIIFPL 810
               +  PL
Sbjct: 764 FSFTLTLPL 772


>gi|308067783|ref|YP_003869388.1| signal transduction histidine kinase [Paenibacillus polymyxa E681]
 gi|305857062|gb|ADM68850.1| Signal transduction histidine kinase [Paenibacillus polymyxa E681]
          Length = 891

 Score =  405 bits (1042), Expect = e-110,   Method: Composition-based stats.
 Identities = 135/738 (18%), Positives = 249/738 (33%), Gaps = 46/738 (6%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150
           A G L+ IS  + K +G    +M+G +      +   D     G   +       K  + 
Sbjct: 156 ADGILQYISPSVEKLLGYTKQEMLGKKRLQFYHVEDADYMRVHGLFKETG---IMKRRVR 212

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK--FSHLH 208
             +G   Y+ ++++   I          R   I               +  +   F    
Sbjct: 213 HKDGH--YLWLEVSYRIIRDEQGRIK--RVLSIGRNITERQKSEENLAKAQRLAMFGSWD 268

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
                +     +++         P     +   +       +          L    E +
Sbjct: 269 WDLVNNVMHFSKEFRSIFGYCVKPVETSIDAFMAAVHPEDTERMKQIITNVILKGIHEET 328

Query: 269 LPE--QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
                  +     L    + +         +          H  +     E EN      
Sbjct: 329 FYRIVLPNGEQKVLRSIWEAEMNEHAGKPVQVVGMIQDVTEHREMEQRLRESENRYRSLF 388

Query: 327 DKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
              P+    V   G++   NPS   LT Y   + +    G   L+ A     +   + + 
Sbjct: 389 QHNPLGICAVNMEGHILSVNPSLEELTGYTKDELL----GADILIMASSEEQDKIKRHME 444

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
           L           +    I    E       +         E +   GI       +    
Sbjct: 445 LA-KQGETQTYESEF--IHKEGER--LFIKMTNIPIFVQEEIVGCYGIIENVTPLKNYIA 499

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRKPFTVFLEQN 504
           ++E    +   IL A S+GI  ++ EG +   N A  ++FG    + +      +    +
Sbjct: 500 QIEKLSNEHSLILNAVSEGIVGLSTEGHVRFMNPAAVEMFGVGSAKPLHGACIDMIRHAD 559

Query: 505 ----TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLT 557
                       + + +       +E+      K          I  L  +       + 
Sbjct: 560 EIGSHFPDEQSSILQAIRSGASYQVEEAVFWK-KGGSSFLASYRISPLMDNGERKGAVMV 618

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
             D +     + ++  AK+ AE+    KS+FL+ +SHE+RTP+  IIG + ++ +     
Sbjct: 619 FVDRT----NEKEIIRAKESAERADRAKSEFLSVMSHELRTPMNGIIGMAGLLADTEL-- 672

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
             +     Y + I  S   ++ I+N++LD+SKIE+GKM+L  E   LD  V     L  +
Sbjct: 673 --DEEQRSYIDIITSSSGALMQILNEILDLSKIEAGKMSLLHESFVLDNVVGSVADLFMM 730

Query: 678 YANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
            A EK I ++      +P  ++ D   ++Q+ +N++SNAI FT  G ++ I     +   
Sbjct: 731 QAMEKGIELKWHVDQEMPGMLVGDHVRIRQVLVNLVSNAIKFTERG-RVNIFVERKAYSR 789

Query: 737 ------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
                 +   V DTG+G+         +PF Q+  +   +  GTGLGL + K +V    G
Sbjct: 790 HKNRCLIEFSVTDTGIGIPADRQHLLFQPFSQLHPALNRKYGGTGLGLSICKNLVKLMGG 849

Query: 791 KFYIFSTPAKGTLIEIIF 808
              + S  A+G       
Sbjct: 850 SIGVDSDEARGATFRFQL 867



 Score =  144 bits (364), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 56/521 (10%), Positives = 147/521 (28%), Gaps = 28/521 (5%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD----LLKRQNTWYGKT 147
            G    ++    K +G    +++ +R   +      D           L      +  + 
Sbjct: 28  EGKCLYVNPAFCKMVGYEQEELLDIRYYHLLYKEAQDQRGLREAYAGWLQATDQVYKTEL 87

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
            L    GT++++ ++L    I+        +             D   +    +  +  +
Sbjct: 88  RLKHKRGTSVWLSLELT---IFDDEATEQSYL-IAYAMDITEKKDMEQVLSDNEDLYMLI 143

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPP---HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
            E      S       +               +  +      + H +D      + L   
Sbjct: 144 TENTPDVISYSTADGILQYISPSVEKLLGYTKQEMLGKKRLQFYHVEDADYMRVHGLFKE 203

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
                  +      + +    +  +  +++        LS   + +     +E       
Sbjct: 204 TGI---MKRRVRHKDGHYLWLEVSYRIIRDEQGRIKRVLSIGRNITERQKSEENLAKAQR 260

Query: 325 TVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
                    + +    N+ + +  F  +  Y           +   + A    D   +K 
Sbjct: 261 L---AMFGSWDWDLVNNVMHFSKEFRSIFGYCVKPV---ETSIDAFMAAVHPEDTERMKQ 314

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
           + +       I        +  N E  +  +    E      + +   G+  +  + R  
Sbjct: 315 I-ITNVILKGIHEETFYRIVLPNGEQKVLRSIWEAEMNEHAGKPVQVVGMIQDVTEHREM 373

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
           ++++     +  S+ +    GI  +N EG ILS N ++ +L GY  +++L     +    
Sbjct: 374 EQRLRESENRYRSLFQHNPLGICAVNMEGHILSVNPSLEELTGYTKDELLGADILIMASS 433

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDIS 562
                +  ++  +      QT E   +    E   + +  I   +          + +++
Sbjct: 434 EEQDKIKRHME-LAKQGETQTYESEFIHKEGERLFIKMTNIPIFVQEEIVGCYGIIENVT 492

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE----IRTP 599
             K    ++           +  S+ +  +S E       P
Sbjct: 493 PLKNYIAQIEKLSNEHSLILNAVSEGIVGLSTEGHVRFMNP 533



 Score =  112 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 59/418 (14%), Positives = 126/418 (30%), Gaps = 55/418 (13%)

Query: 314 YFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                  L     +  P    + S  G   Y NP+F  +  Y+  + ++I      L   
Sbjct: 3   SAARRLPLLEHMYNHAPTGIVILSKEGKCLYVNPAFCKMVGYEQEELLDIRY-YHLLYKE 61

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
            +             ++         RL   +     S+ ++       ++  E      
Sbjct: 62  AQDQRGLREAYAGWLQATDQVYKTELRLKHKR---GTSVWLSLELTIFDDEATEQSYLIA 118

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
              +  + +  ++ +         I E T D I+    +GI+   + +V KL GY  +++
Sbjct: 119 YAMDITEKKDMEQVLSDNEDLYMLITENTPDVISYSTADGILQYISPSVEKLLGYTKQEM 178

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
           L K    F        M       +    ++T         K+   L L +  + +    
Sbjct: 179 LGKKRLQFYHVEDADYMR------VHGLFKETGIMKRRVRHKDGHYLWLEVSYRIIRDEQ 232

Query: 553 C----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH---EIRTPLTAIIG 605
                      +I+E ++ +  L+ A+++A   S    D +  V H   E R    +I G
Sbjct: 233 GRIKRVLSIGRNITERQKSEENLAKAQRLAMFGSWDW-DLVNNVMHFSKEFR----SIFG 287

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYID-RSGNLVLDIVNDLL-------DISKI------- 650
           +                   +   +       +  I+ +++          +I       
Sbjct: 288 YCVKPVETSIDA--------FMAAVHPEDTERMKQIITNVILKGIHEETFYRIVLPNGEQ 339

Query: 651 -------ESGKMNLHFEPVSLDEAVSEAIS--LVQLYANEKRILIRTSFANNIPRILA 699
                  E+       +PV +   + +      ++    E     R+ F +N   I A
Sbjct: 340 KVLRSIWEAEMNEHAGKPVQVVGMIQDVTEHREMEQRLRESENRYRSLFQHNPLGICA 397


>gi|119898773|ref|YP_933986.1| putative hybrid sensor and regulator [Azoarcus sp. BH72]
 gi|119671186|emb|CAL95099.1| putative hybrid sensor and regulator [Azoarcus sp. BH72]
          Length = 1682

 Score =  405 bits (1042), Expect = e-110,   Method: Composition-based stats.
 Identities = 130/750 (17%), Positives = 263/750 (35%), Gaps = 54/750 (7%)

Query: 88   NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
              D      E++    + +G    +M+GM L DV   L         DL++ Q     + 
Sbjct: 433  RAD-DLNYVEVNAAACRLLGYSREEMLGMNLRDVQGRLTPAAFQARIDLVREQGGARFEN 491

Query: 148  TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                 +G  L V +D+  +     +          I           A  + L    S  
Sbjct: 492  RRRCKDGRLLDVTVDVTIIRQDGVD------YLVDIWSDVTAQKAAEAEIRML----SMA 541

Query: 208  HEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
             +       +     +               + ++              +     +  + 
Sbjct: 542  VDQSPNTVLITDLDANTVYVNDAFSRNNGYTREEILGQNPRLLMSGKTPRATYEAMWRAL 601

Query: 266  ESSLPEQEDF--HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
             +  P + +F     N N+  K      L+++      Y++     +     +E      
Sbjct: 602  GAGEPWKGEFINRRKNGNERIKAVTIVPLRDDDGCVCNYVAVMEDITERRRIEEQLRKLS 661

Query: 324  ETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
              VD+ P    +      + Y N +F+  T + + + +    GL+  +     +     +
Sbjct: 662  LAVDQSPEAIVITDLDARIEYVNQAFVHQTGFSAEEAL----GLNPAVLKSGRTPEATYR 717

Query: 383  PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             +                   +    +                       I+ +  + + 
Sbjct: 718  EMWARLVQGESWQGELYN---RRKDGSEYVELANITPVRQPDGAVTHYLAIKEDITEKKR 774

Query: 443  NKRKMEIEVMQL------------------CSILEATSDGIAIINREGIILSTNRAVSKL 484
               ++E    +L                   +I +  + GIA+I ++ +++  NR +  +
Sbjct: 775  TAEELEAYRTRLEQLVASRTEALRLASEHQQAIFDTATSGIALI-KDRVLIRCNRRLHDI 833

Query: 485  FGYPVEDILRKPFTVFLEQNTPSVMN-HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
            FG+P  +++ K   ++        +    +   L        E+  +          L  
Sbjct: 834  FGWPDGEMVGKSTAIWYVDEASYALGGDAVYNRLWQGEAVCREQELMRRDGSLFWARLTG 893

Query: 544  IIKKLPFSS-CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
                +   S      + DI+  ++    + +A+K+AE  +  K++FLA +SHEIRTP+ A
Sbjct: 894  KAVDIHDRSKGTVWVIDDITTEREAFQTVRNAQKLAEDAARAKANFLANMSHEIRTPMNA 953

Query: 603  IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
            +IG + ++ N         +  +Y   I  S   +L I+ND+LD+SKIE+GKM +     
Sbjct: 954  VIGMTHLVLNTDLTR----QQRDYLKKIQGSSQHLLGIINDILDLSKIEAGKMAVEHIEF 1009

Query: 663  SLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPS 721
             LD  +     L+   A  K + +       +PR ++ D   + Q+ +N  +NA+ FT  
Sbjct: 1010 DLDTVLENVTGLISEKATGKGLELIIDVGKTVPRSLVGDPLRLGQVLINYANNAVKFTER 1069

Query: 722  GGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
            G  I+I        E    +   V DTG+G+   ++ +  + F Q  NS   +  GTGLG
Sbjct: 1070 GS-IVIRCDLAETAERDVVLRFSVTDTGIGIEAEQIPRLFQTFEQADNSTTRKYGGTGLG 1128

Query: 778  LPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
            L +++ +     G+  + S   KG+     
Sbjct: 1129 LAISRELAHMMGGEAGVDSEYGKGSTFWFT 1158



 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 47/463 (10%), Positives = 118/463 (25%), Gaps = 32/463 (6%)

Query: 148 TLWPIEGTNLYVPIDLAAL-PIYSRNREF----------SGFRGFGIVHVNRVDNDPRAL 196
            +  ++G    + + +A L P+ +   E           +     G     R        
Sbjct: 354 LILEVDGAGRRLRLGIAYLQPLPAEAGEPFLAEERSLVEAAALRIGSALQRRRILATERD 413

Query: 197 GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256
            + L K               +   Y   +  +       + ++  +             
Sbjct: 414 TQALLKAVVAEAPYAIELIRADDLNYVEVNAAACRLLGYSREEMLGMNLRDVQGRLTPAA 473

Query: 257 EKYP-LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
            +    L  E+     +      +            ++ +  +    +   +  +     
Sbjct: 474 FQARIDLVREQGGARFENRRRCKDGRLLDVTVDVTIIRQDGVDY--LVDIWSDVTAQKAA 531

Query: 316 DEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
           +    +    VD+ P    +     N  Y N +F     Y   + +         L    
Sbjct: 532 EAEIRMLSMAVDQSPNTVLITDLDANTVYVNDAFSRNNGYTREEILGQNP----RLLMSG 587

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
            +     + +                   +    N            +          + 
Sbjct: 588 KTPRATYEAMWRALGAGEPWKGE---FINRRKNGNERIKAVTIVPLRDDDGCVCNYVAVM 644

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
            +  + R  + ++     +L   ++ + + I I + +  I   N+A     G+  E+ L 
Sbjct: 645 EDITERRRIEEQLR----KLSLAVDQSPEAIVITDLDARIEYVNQAFVHQTGFSAEEALG 700

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC- 553
               V     TP      +   L     ++ +       K+         I  +      
Sbjct: 701 LNPAVLKSGRTPEATYREMWARLVQG--ESWQGELYNRRKDGSEYVELANITPVRQPDGA 758

Query: 554 ---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
              Y     DI+E K+   +L   +   E+  + +++ L   S
Sbjct: 759 VTHYLAIKEDITEKKRTAEELEAYRTRLEQLVASRTEALRLAS 801


>gi|283852097|ref|ZP_06369371.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283572487|gb|EFC20473.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 1340

 Score =  405 bits (1041), Expect = e-110,   Method: Composition-based stats.
 Identities = 135/815 (16%), Positives = 274/815 (33%), Gaps = 73/815 (8%)

Query: 61   SVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCD 120
            + + T  L +E     D   + ++  + +D  G    ++  L + +G         +   
Sbjct: 261  AEAETARLGAEAARYRDLYDQAMQGLFRLDPAGRPLAVNTPLARLLGYRDVADCLRQAGQ 320

Query: 121  VSDILHIDPNNH---IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSG 177
             S  L +D       +   L R +    +   +  +G+   +   L    +         
Sbjct: 321  ASHPLRLDAPGRRDVLLAALARPDAVAFEVGSYRPDGSITRLRCVLRC--VRDARGCPVA 378

Query: 178  FRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK 237
              G        + +   A          H  E+     +  +  +   +           
Sbjct: 379  LEGACADFPAALPDGRPAHEIEYRSIVEHQTELICRRDAAGRLTFANPAFARYWSRTPEA 438

Query: 238  NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297
                        +D  +   +   L     +   +      +     ++     L + S 
Sbjct: 439  CVAEDFRPGIPEEDAAVVARRVASLGPARPTTGFEHRVVRADGRIRWQRWTCRALFDASG 498

Query: 298  ESFEYLSHRNHPSLSAYFDEG----ENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLT 352
               EY       +     ++            ++  P+P F     G     N +F  L 
Sbjct: 499  AVAEYQFVGRDVTARKLVEQRLHTQAGHALAMLEALPLPVFHKGRDGRYTGCNQAFETLL 558

Query: 353  KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
                   +     L  L      S   A++  +L +  R    A   L         S+A
Sbjct: 559  GLPRARIVGQT--LGDLCGTDNASPYEALESELLAKGHRQVYEARLSLPA----GWRSMA 612

Query: 413  MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK-------------------------- 446
            +       A    E     G+  +  + R+ +                            
Sbjct: 613  IHKAVVRDAGAGGEATGIIGVALDVTERRLAEAAATKVRDGLEAETLQLGAELGRVRARL 672

Query: 447  -------------MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
                         +  E   L ++L +  DGI++++ +  +++ NRA+  L+     + +
Sbjct: 673  AAEVLERERVGERLRHEARFLETVLSSIQDGISVLSPDLTVVTVNRAMRALY-IDSNEPV 731

Query: 494  RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS- 552
             +      +       +      ++            G   E   L L          + 
Sbjct: 732  GRKCHEVYQGLGMPCQDCPSLRAMASGKLAMSLVKRCGLGGETGWLELFCFPLFDDGGAV 791

Query: 553  -CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
                  + D++  K+ + +L+ A + AE  S  K  FLA +SHEIRTPL A++G+ +++ 
Sbjct: 792  TGVVEIVRDVTAGKKLEAELAAALERAEAGSQAKGAFLANMSHEIRTPLNAVLGYVQLML 851

Query: 612  NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
              R  P    R  E    ++ S   +L ++ND+LD SKIE+G+M L  E   L   ++  
Sbjct: 852  RDRLEP----RQRERLAVVEESAATLLSLINDILDYSKIEAGRMELKNESFDLPACLAAV 907

Query: 672  ISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIIS- 728
            +   ++ A  K + +  +    +PR +  D   ++Q+  N+LSNA+ +T +G   + +S 
Sbjct: 908  VKEQEVLARNKGLDLTLAMGPEVPRDVRGDGLRLRQVLRNLLSNAVKYTEAGSVAVTVSR 967

Query: 729  -------TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
                         + +   V DTGVG+   +       F Q+ +    R  GTGLGL + 
Sbjct: 968  TGELPGPAGEAPRQILRFAVADTGVGIAEEQQAAIFDSFTQVDDGLTRRQAGTGLGLAIC 1027

Query: 782  KAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
            + +     G  ++ S P +G++  +  P ++ + P
Sbjct: 1028 RRLAGLMGGGVFVESVPGRGSVFWLECP-FEVAEP 1061



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/374 (8%), Positives = 95/374 (25%), Gaps = 7/374 (1%)

Query: 184 VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL 243
           +   R+ + P A    L    + +        +   E   +   +              +
Sbjct: 4   LCETRLRDLPPATPLTLGLWTTAVQAAGILCQAGVAEALVLDGGRPLGVVTVRSVARVLV 63

Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303
            +        ++    P+  S+E+ +      H +            T +     +   +
Sbjct: 64  RDPDRAAQLAVRDFMDPVAVSQETDVLPSALRHLLAAPSRRLAVVDATGRAVGLLTPLLV 123

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKC----PIPFFVYSHGNLFYANPSFLLLTKYKSVDD 359
           +               +    TV       P+P  +   G +  A    +++ +      
Sbjct: 124 ARLGQGVDGLSGRTVASAMVRTVVTARAGEPLPLVL---GRMVRAGVGGVVVAEADRPLG 180

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
           +  A   + L+   +      ++ VM    +      S        +   +  +      
Sbjct: 181 LVTATDAAALMAGGRDIRRCPVEAVMRAPVEAVSPQLSLAEAVGGMDGAGAGRLAVTDAA 240

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
                             +       ++  E  +   + +    G+  ++  G  L+ N 
Sbjct: 241 GFLLGVLTATDVATALHLLLAEAETARLGAEAARYRDLYDQAMQGLFRLDPAGRPLAVNT 300

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
            +++L GY       +                    + +L     +         +  + 
Sbjct: 301 PLARLLGYRDVADCLRQAGQASHPLRLDAPGRRDVLLAALARPDAVAFEVGSYRPDGSIT 360

Query: 540 SLRIIIKKLPFSSC 553
            LR +++ +  +  
Sbjct: 361 RLRCVLRCVRDARG 374


>gi|220909140|ref|YP_002484451.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219865751|gb|ACL46090.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 1391

 Score =  405 bits (1041), Expect = e-110,   Method: Composition-based stats.
 Identities = 122/791 (15%), Positives = 257/791 (32%), Gaps = 56/791 (7%)

Query: 68   LDSENTFVFDPIPRTVRFTWNIDAHG-YLKEISEELPKTIGNYAFKMIGMR--LCDVSDI 124
              SE  F            W  D     +  +S    +  G    ++        D    
Sbjct: 462  AQSEAQFRLLTEHLPETVFWVTDPQTERILYVSPAYERLWGQPRDRLYSHHQSWLDGIHP 521

Query: 125  LHIDPNNHIGDLLKRQ-NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI 183
                P        + +  ++  +  +   +G   +V     A+P  +   E   +R  G+
Sbjct: 522  QD-RPRIQTAYAAQTRTGSYDEEYRILHPDGRLAWVRDRRFAIP--NATGEV--YRLVGL 576

Query: 184  VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP------PPHLRMK 237
                          ++ + KF  L EI     ++      +                 ++
Sbjct: 577  TENITARKRSEIDLRQSEAKFRRLVEISMFGVAIGDFSGRMTYANDALLKMIGYSREELE 636

Query: 238  NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYT----KKQYFGTLQ 293
                   +    +   L  +    L     S P ++++   + ++               
Sbjct: 637  AGQIRWIDLTPPEHLPLDWQAGEELRQFGVSTPFEKEYMHKDGHRVPILIGGALLGEPYV 696

Query: 294  NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY-ANPSFLLLT 352
            +       YL                      V+  P+    +    +    + +   + 
Sbjct: 697  DQELIIAFYLDLSGIKQTEHQLRAALQQLNSHVENTPMAVIEWDAHFIVRRWSGAAPHIF 756

Query: 353  KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
             + + + +        L+      D   +  V             +     + +      
Sbjct: 757  GWPAEEVLGRCINELNLVYE---EDLAKVTNVCDRILSGAEPQIISHNRNYKKDGSVLHC 813

Query: 413  MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG 472
            + +      +   +      +  +  +    +  +     +      A +  +   N   
Sbjct: 814  VWYNSTLT-DPMGQVTSILSLVLDRTEQVRAEESLRQSEERFRLAARAVTGMVYDWNVAT 872

Query: 473  IILSTNRAVSKLFGYPVEDI--LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530
              +  +  +  L G   E++   +  ++  +       +   +  I++     + +    
Sbjct: 873  QEVYRSEGLYSLIGVHPEEVPPTQAWWSEQIHPEDLVHLYPQMQVIMA-GQGDSYDFEYR 931

Query: 531  GSTKEEKLLSLRIIIKKLPFSSCYSLTM----HDISEWKQEKNKLSH-------AKKIAE 579
               ++   ++       +  S    + +     DI+  KQ + +  H       A++ AE
Sbjct: 932  VRHRDGHWVNFWDRGYLIRNSQGQVIRVVGSSTDITLRKQLEQQREHLLIQEQTAREQAE 991

Query: 580  KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639
              +  K +FLA +SHE+RTPL  I+G+ ++++ + F P    R +E    I+R+  L + 
Sbjct: 992  LANRMKDEFLAVLSHELRTPLNPILGWCKLLQTRPFEP---ARAMEALRTIERNAQLQVQ 1048

Query: 640  IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA 699
            ++ DLLD SKI  GK+ L   PV L   ++ A+  V+L A  K I ++T    +   +  
Sbjct: 1049 LIEDLLDFSKIVQGKLPLQIAPVQLSSIITAALESVRLAAEAKTIQLQTCLDQHPILVWG 1108

Query: 700  DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN--------------EEVILRVRDTG 745
            D   ++Q+  N+LSNAI FTP GGQ+ +                         + V DTG
Sbjct: 1109 DANRLQQVVWNLLSNAIKFTPEGGQVEVRLESGEGSPGKRAHPMPVNTSSYAQICVIDTG 1168

Query: 746  VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLI 804
             G+ +  L      F Q   +   R  G GLGL + K +V+ + G+ +  S    +G   
Sbjct: 1169 KGIASDFLPHVFDYFRQEDGAMTRRYGGLGLGLAIVKQIVEMHGGRIWAESPGLGEGATF 1228

Query: 805  EIIFPLYDTSH 815
             +  PL     
Sbjct: 1229 TVRLPLMKEEQ 1239



 Score =  144 bits (363), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 61/525 (11%), Positives = 143/525 (27%), Gaps = 29/525 (5%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQNTW 143
             +     G+    +    +  G  A    G            +       D L++   +
Sbjct: 352 LLFTTLPDGWSDYCNSHFYQFTGMTADAARGWGWMTAVYPEDRERLRENWLDALRQGKPF 411

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             K  L   +G   Y      ++PI     + S  +  G+        + +    + + +
Sbjct: 412 AMKYRLRRADGE--YRWFLGRSIPIQEETGQIS--QWLGLWTEIHELKETQIALAQSEAQ 467

Query: 204 FSHLHEIKK-GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY------AHKDDVLKT 256
           F  L E        V   + +     SP            L  ++       H  D  + 
Sbjct: 468 FRLLTEHLPETVFWVTDPQTERILYVSPAYERLWGQPRDRLYSHHQSWLDGIHPQDRPRI 527

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS----HRNHPSLS 312
           +      +   S  E+      +      +     + N + E +  +             
Sbjct: 528 QTAYAAQTRTGSYDEEYRILHPDGRLAWVRDRRFAIPNATGEVYRLVGLTENITARKRSE 587

Query: 313 AYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
               + E      V+       +    G + YAN + L +  Y   +    AG +  +  
Sbjct: 588 IDLRQSEAKFRRLVEISMFGVAIGDFSGRMTYANDALLKMIGYSREEL--EAGQIRWIDL 645

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
            P        +     R              +  +      +            + +   
Sbjct: 646 TPPEHLPLDWQAGEELRQFGVSTPFEKEY--MHKDGHRVPILIGGALLGEPYVDQEL-II 702

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
               +    +  + ++   + QL S +E T   +   +   I+   + A   +FG+P E+
Sbjct: 703 AFYLDLSGIKQTEHQLRAALQQLNSHVENTPMAVIEWDAHFIVRRWSGAAPHIFGWPAEE 762

Query: 492 ILRKPFT--VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
           +L +       + +   + + +    ILS    Q +        K+  +L        L 
Sbjct: 763 VLGRCINELNLVYEEDLAKVTNVCDRILSGAEPQIISH-NRNYKKDGSVLHCVWYNSTLT 821

Query: 550 FSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
                       + D +E  + +  L  +++     +   +  + 
Sbjct: 822 DPMGQVTSILSLVLDRTEQVRAEESLRQSEERFRLAARAVTGMVY 866



 Score =  125 bits (314), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 52/449 (11%), Positives = 115/449 (25%), Gaps = 37/449 (8%)

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244
            V     +  A   R  +    L            +  +    Q              +T
Sbjct: 330 QVITALQESEARYHRRCEAVPGLLFTT--LPDGWSDYCNSHFYQFTGMTADAARGWGWMT 387

Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
             Y    + L+      L   +     +      +            +Q  + +  ++L 
Sbjct: 388 AVYPEDRERLRENWLDALRQGKP-FAMKYRLRRADGEYRWFLGRSIPIQEETGQISQWLG 446

Query: 305 HRNHPSLSAYFD----EGENLTPETVDKCPIPF-FVYS--HGNLFYANPSFLLLTKYKSV 357
                           + E       +  P    +V       + Y +P++  L      
Sbjct: 447 LWTEIHELKETQIALAQSEAQFRLLTEHLPETVFWVTDPQTERILYVSPAYERLWGQPRD 506

Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
                            +   +  +    Y +     +       +  +   +  +    
Sbjct: 507 RLYSHHQSWL-----DGIHPQDRPRIQTAYAAQTRTGSYDEEYRILHPDGRLA-WVRDRR 560

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
           F   N   E     G+       + ++  +     +   ++E +  G+AI +  G +   
Sbjct: 561 FAIPNATGEVYRLVGLTENITARKRSEIDLRQSEAKFRRLVEISMFGVAIGDFSGRMTYA 620

Query: 478 NRAVSKLFGYPVEDILRKPFTV--FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
           N A+ K+ GY  E++                 +      E+    +    EK  +   K+
Sbjct: 621 NDALLKMIGYSREELEAGQIRWIDLTPPEHLPLDWQAGEELRQFGVSTPFEKEYM--HKD 678

Query: 536 EKLLSLRIIIKKLP----FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
              + + I    L               D+S  KQ +++L  A +               
Sbjct: 679 GHRVPILIGGALLGEPYVDQELIIAFYLDLSGIKQTEHQLRAALQQLN------------ 726

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
            SH   TP+  I   +  I  +  G   +
Sbjct: 727 -SHVENTPMAVIEWDAHFIVRRWSGAAPH 754



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/169 (7%), Positives = 38/169 (22%), Gaps = 6/169 (3%)

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
              +      +  E          ++    +     EA    +     +G     N    
Sbjct: 311 AMGQAELYGQLRGELARQHQVITALQESEARYHRRCEAVPGLLFTTLPDGWSDYCNSHFY 370

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
           +  G   +      +   +       +     + L                 + +     
Sbjct: 371 QFTGMTADAARGWGWMTAVYPEDRERLRENWLDALRQGKP--FAMKYRLRRADGEYRWFL 428

Query: 543 IIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
                +   +     +     +I E K+ +  L+ ++      + H  +
Sbjct: 429 GRSIPIQEETGQISQWLGLWTEIHELKETQIALAQSEAQFRLLTEHLPE 477



 Score = 44.2 bits (103), Expect = 0.083,   Method: Composition-based stats.
 Identities = 18/120 (15%), Positives = 40/120 (33%), Gaps = 10/120 (8%)

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF----TVFLEQNTPSVM 509
           L +    T+ G+ +   +G I + N A   + G+    +    +       +  +     
Sbjct: 26  LWAATATTAVGMILQRSDGSIQACNAAAESILGFTFAQMRGCHYIDCPWQTIHADGSPFP 85

Query: 510 NHYLTEILSLDLRQTLEKITLG-STKEEKLLSLRIIIKKLPFSS-----CYSLTMHDISE 563
                 +L+L   Q +    +G       L+ L+I  + L             T  +I++
Sbjct: 86  GTAHPAMLALQTGQPVTGEIMGIYQPNGDLVWLQIDAQPLFQGPGSAPWGVVTTFVEITQ 145


>gi|167629693|ref|YP_001680192.1| sensor histidine kinase, putative [Heliobacterium modesticaldum
           Ice1]
 gi|167592433|gb|ABZ84181.1| sensor histidine kinase, putative [Heliobacterium modesticaldum
           Ice1]
          Length = 940

 Score =  405 bits (1041), Expect = e-110,   Method: Composition-based stats.
 Identities = 133/761 (17%), Positives = 242/761 (31%), Gaps = 52/761 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D    ++ ++    +  G  +  + G R  D   +   D          R  T  G + 
Sbjct: 25  LDPDRIIRFLNPSAERLTGWSSQDVAGRRGDDFFHLDETDAAGLSAH-CGRIVTPEGTSL 83

Query: 149 LWPIEGTNLY--------VPIDLAALPIYSRNREFSGFRGFGIVHVNRVD--------ND 192
              ++   L           + L A+P+     E       G                  
Sbjct: 84  SLCVQAHGLASNGERADAFLVVLKAVPV----GEHGSPSCHGACRRLTAAYSSLLEQYRQ 139

Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFS--QQSPPPHLRMKNKVSSLTE---YY 247
            +   ++ +++F  +      +      +        Q           +         Y
Sbjct: 140 LKTELRKREQRFRDVERAFDEYIWELDGEGRYAYVSPQIHSILGVAPEALIGTPVWQYVY 199

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE----SFEYL 303
               +             +     +    + +            + N            L
Sbjct: 200 PDDVERFLNIFRQAAAENKLVRNLEYRRRSASGELRWLSANGVPVFNEQGTLIGFRGATL 259

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEI 362
                 +  A   + E      V        V    G +   N     +    +   +  
Sbjct: 260 DITKQKAAEAALRDSEEHYRSIVTAIAEGMVVQERDGRIVSFNRKAEAILGLTADQLMGR 319

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK-A 421
                      +       +      S RT       +  +         +         
Sbjct: 320 TSCDPRWRAVREDGSPFPGEEHPAMVSLRTGKPCHNVVMGVYKPNGEMCWILVNAEPLFR 379

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRA 480
               E         +  + R  ++ +     QL ++  + +      +  +  +L  + A
Sbjct: 380 PGESEPFRVVATFTDITERRRIEQTLLETREQLKNLFNSLNIVFWSYDVTQRRLLQLSPA 439

Query: 481 VSKLFGYPVEDILRKPFTVFL--EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
              LFG P +     P T       +    +      +L       ++           L
Sbjct: 440 CEGLFGVPAQAFFDHPDTWMQATHPDDLPRLRRISKRVLVGKA---IQDEFRIIRNNGDL 496

Query: 539 LSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
             +   +  +  SS   +     + DI+E KQ   +L  AK  AE+ S  KS FLA +SH
Sbjct: 497 RWVSGHVIPVADSSGKVVRLDGMLMDITEKKQVDMELRIAKVRAEEASLAKSSFLAMMSH 556

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           EIRTP+  IIG +E++   R         ++YA  +  S  L+L ++ND+LD SK+E+GK
Sbjct: 557 EIRTPMNGIIGMNELLLGTRLTS----EQLDYAQAVQESAELLLTVINDILDYSKVEAGK 612

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILS 713
           M L          V     L+Q  A EK + I T  A+    +   D   ++Q+ LN++S
Sbjct: 613 MELESIDFDPVPVVDGVARLLQGKAREKGLTISTFIADEARFLFQGDPGRLRQVLLNLVS 672

Query: 714 NAIHFTPSGGQIIISTTHTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
           NA+ FT  G  I I     S+      +   V DTG+G+     +   +PF Q   S   
Sbjct: 673 NAVKFTERG-TIDIRVFPVSDTGSQVTIRFEVIDTGIGIAPEIRDCLFQPFSQGNTSMTR 731

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           +  GTGLGL +++ +V+   GK  + S P +G+      P+
Sbjct: 732 KYGGTGLGLAISRNLVELMGGKIGVQSKPGEGSTFWFTLPV 772



 Score =  105 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 39/387 (10%), Positives = 98/387 (25%), Gaps = 26/387 (6%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144
           + W +D  G    +S ++   +G     +IG  +        ++   +I      +N   
Sbjct: 161 YIWELDGEGRYAYVSPQIHSILGVAPEALIGTPVWQYVYPDDVERFLNIFRQAAAENKLV 220

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
                     +     +    +P+++      GFRG  +           A  +  ++ +
Sbjct: 221 RNLEYRRRSASGELRWLSANGVPVFNEQGTLIGFRGATL--DITKQKAAEAALRDSEEHY 278

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQS-PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
             +         V++    I S        L +             +   ++ +  P   
Sbjct: 279 RSIVTAIAEGMVVQERDGRIVSFNRKAEAILGLTADQLMGRTSCDPRWRAVREDGSPFPG 338

Query: 264 SEESSLPEQEDF----------HTINLNQYTKKQYFGTLQNNSKESF-----EYLSHRNH 308
            E  ++                +  N            L    +         +      
Sbjct: 339 EEHPAMVSLRTGKPCHNVVMGVYKPNGEMCWILVNAEPLFRPGESEPFRVVATFTDITER 398

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
             +     E         +   I F+ Y      L   +P+   L    +    +     
Sbjct: 399 RRIEQTLLETREQLKNLFNSLNIVFWSYDVTQRRLLQLSPACEGLFGVPAQAFFDHPDTW 458

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
                   L     I   +L         A      I  N  +   ++      A+   +
Sbjct: 459 MQATHPDDLPRLRRISKRVLVGK------AIQDEFRIIRNNGDLRWVSGHVIPVADSSGK 512

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQ 453
            +  +G+  +  + +    ++ I  ++
Sbjct: 513 VVRLDGMLMDITEKKQVDMELRIAKVR 539



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 33/276 (11%), Positives = 83/276 (30%), Gaps = 15/276 (5%)

Query: 325 TVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
            V + P+P  V     +  + NPS   LT + S  D+    G          +   +   
Sbjct: 14  LVRQFPLPLAVLDPDRIIRFLNPSAERLTGWSS-QDVAGRRGDDFFHLDETDAAGLSAHC 72

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT--- 440
             +   + T ++   + H +  N E + A   +          +   +G           
Sbjct: 73  GRIVTPEGTSLSLCVQAHGLASNGERADAFLVVLKAVPVGEHGSPSCHGACRRLTAAYSS 132

Query: 441 -----RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
                R  K ++     +   +  A  + I  ++ EG     +  +  + G   E ++  
Sbjct: 133 LLEQYRQLKTELRKREQRFRDVERAFDEYIWELDGEGRYAYVSPQIHSILGVAPEALIGT 192

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555
           P   ++  +      +   +  + +            +   +L  L      +       
Sbjct: 193 PVWQYVYPDDVERFLNIFRQAAAENKL-VRNLEYRRRSASGELRWLSANGVPVFNEQGTL 251

Query: 556 LTMH----DISEWKQEKNKLSHAKKIAEKESSHKSD 587
           +       DI++ K  +  L  +++      +  ++
Sbjct: 252 IGFRGATLDITKQKAAEAALRDSEEHYRSIVTAIAE 287



 Score = 46.2 bits (108), Expect = 0.023,   Method: Composition-based stats.
 Identities = 32/234 (13%), Positives = 80/234 (34%), Gaps = 32/234 (13%)

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE--QNTPS 507
                 S++      +A+++ + II   N +  +L G+  +D+  +    F    +   +
Sbjct: 7   SSETFLSLVRQFPLPLAVLDPDRIIRFLNPSAERLTGWSSQDVAGRRGDDFFHLDETDAA 66

Query: 508 VMNHYLTEILSLDLRQT------LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDI 561
            ++ +   I++ +              + G   +  L+ L+ +      S         +
Sbjct: 67  GLSAHCGRIVTPEGTSLSLCVQAHGLASNGERADAFLVVLKAVPVGEHGSPSCHGACRRL 126

Query: 562 S--------EWKQEKNKLSHAKKIAEKESSHKSDFL---------ARVSHEIRTP-LTAI 603
           +        +++Q K +L   ++          +++         A VS     P + +I
Sbjct: 127 TAAYSSLLEQYRQLKTELRKREQRFRDVERAFDEYIWELDGEGRYAYVS-----PQIHSI 181

Query: 604 IGFS-EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           +G + E +          P  +E    I R       +V +L    +  SG++ 
Sbjct: 182 LGVAPEALIGTPVWQYVYPDDVERFLNIFRQAAAENKLVRNLEYRRRSASGELR 235


>gi|119944259|ref|YP_941939.1| multi-sensor histidine kinase [Psychromonas ingrahamii 37]
 gi|119862863|gb|ABM02340.1| multi-sensor histidine kinase with CHASE and PAS/PAC sensory
           domains [Psychromonas ingrahamii 37]
          Length = 1255

 Score =  405 bits (1041), Expect = e-110,   Method: Composition-based stats.
 Identities = 113/522 (21%), Positives = 215/522 (41%), Gaps = 15/522 (2%)

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKS 356
            S    +      ++           + +D      + ++      + N  +  +  Y+ 
Sbjct: 333 VSGRERAINTARYINKELSIERQRLSDIIDATNSGTWQWNIQTGEAFFNDHWPRVLGYEL 392

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
            +    +         P+  + +  +  +                           +   
Sbjct: 393 SELGPTSFETWLKFIHPEDKELSIKR--LQKHLSGELDYYEYETRMRHKKGGWVWVLARG 450

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476
                    + +   G   +    +    +++     + +IL    DGI  IN  GI+ S
Sbjct: 451 KVTTWTADGKPLLMCGTHQDITKQKFATEQLQDSAALIEAILNTVVDGIITINEYGIVES 510

Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT--LEKITLGSTK 534
            N A   +FGY   +++    T+ + ++  S  + Y+         +   +++I  G  K
Sbjct: 511 INPAAEHIFGYSATEVIGHNITMLMPESYRSQHDGYIEHFNITGEAKIVGIDRIIEGKRK 570

Query: 535 EEKLLSLR--IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
              +  +   +    L     ++  + DI+E K+ K  L  AK  AEK +  KS FLA +
Sbjct: 571 NGSIFPMELGVSKVLLGEKKLFASVVRDITEQKRAKQALISAKTEAEKANLAKSQFLAAM 630

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHEIRTP+  +IG  +V++            ++  + I  S   +L I+ D+LD SKIE+
Sbjct: 631 SHEIRTPMNGVIGMVDVLQQSSLKGF----QVDMVDTIRDSAFSLLSIIEDILDFSKIEA 686

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNI 711
           GK+++ + P+++ E V +A  ++   A +K++ +       IP I L D   ++QI +N+
Sbjct: 687 GKLDIEYAPMAVAEVVEKACFMLAHLAEKKKVELTLFTDPAIPDITLGDANRLRQIVVNL 746

Query: 712 LSNAIHFT---PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
            +NAI F+      G++ +    T    + +RV D G+GM    L K   PF Q   +  
Sbjct: 747 TNNAIKFSSGSDRPGRVSVQALMTDPTMLEIRVIDNGIGMNESALSKLFMPFYQADVTTT 806

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            R  GTGLG+ +A+ +V    G+  + ST  KG++  +  PL
Sbjct: 807 RRFGGTGLGITIARNLVQLMGGEITVQSTLNKGSIFSVHLPL 848


>gi|212637156|ref|YP_002313681.1| sensory box histidine kinase/response regulator [Shewanella
            piezotolerans WP3]
 gi|212558640|gb|ACJ31094.1| Sensory box histidine kinase/response regulator [Shewanella
            piezotolerans WP3]
          Length = 1771

 Score =  405 bits (1041), Expect = e-110,   Method: Composition-based stats.
 Identities = 131/783 (16%), Positives = 281/783 (35%), Gaps = 53/783 (6%)

Query: 59   QESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRL 118
               V+      + +  V +  P  +      D  G L   +       G    +M+ M +
Sbjct: 507  FNDVTEQFSAAAWSNAVLESAPEAMLIV---DESGRLVFTNSRCQLLFGYDEAQMLAMSV 563

Query: 119  CDVSDILHIDPNNHIGDLLKRQNTWYGKTT-------LWPIEGTNLYVPIDLAALPIYSR 171
              +        +  + +    +                   +G    V I L  LP+   
Sbjct: 564  DQLVPDSIRSHHASLREKFVSEGRDRKMGLGMTSDLMALNADGCEFPVEISLGLLPV-DA 622

Query: 172  NREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH--------EIKKGHSSVEKEKYD 223
            + +    +    V     +       K  + +F  L           +   + + +   D
Sbjct: 623  DGQ---RQVAATVRDMTEELKIAQRIKDSENRFRGLVTNIPGAVYRTRIEDTWIMEYVSD 679

Query: 224  IFSQQSPPPHLR-MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQ 282
                 +  P    ++N   S       +D  + +       +E+ S   Q      + + 
Sbjct: 680  NIGDITGYPAADFIENSKRSFASLIIEEDLAIASHAIETALAEQRSFEVQYRIQHRDASI 739

Query: 283  YTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE----GENLTPETVDKCPIPFF---- 334
            +   +    + + +  +  +    N  ++S    E     +       +  P   +    
Sbjct: 740  HWVHEKGKAIYDENGVALWFDGSINDITISKAAQEKIAQSQQQLETITESIPSTVYQLHW 799

Query: 335  -VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393
                  N  + + + +    +     IE    ++  +   +    + I+ +    S    
Sbjct: 800  RSNRDRNFTFLSSACIATLGFHRDQVIEKFDLVAECIINDE--RTHIIEALSGVSSSGLN 857

Query: 394  IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
                      +    +   +            +++  NG   +  + +   +++      
Sbjct: 858  WTEE---FRYRHPMGDIRWLQA-GAHGNQLADDSIIWNGYLMDITERKQIDKELAKREAH 913

Query: 454  LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
              ++ +    GI  ++  G+IL  N   S+      +++    F  +  ++         
Sbjct: 914  FRALFDNAGIGIVNVDERGLILDCNEQFSQYVQLSSDELNGSSFFDYQHRDDQQTAKQLF 973

Query: 514  TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKN 569
            ++++  D    +       ++   ++ + + +  L           L+M +I+  KQ  N
Sbjct: 974  SQLMGNDDSS-MTAEIRLLSQSGDVMWMDLTLTGLQDKHGTLNSAVLSMANITSLKQISN 1032

Query: 570  KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
            +L  AK  A+  S  KSDFLA +SHEIRTP+ AIIG S++          + +   Y   
Sbjct: 1033 ELKQAKDSADAASKAKSDFLANMSHEIRTPMNAIIGMSQLCLQTEL----DKKQQNYVQK 1088

Query: 630  IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
            IDR+   +L I+ND+LD SKIE+GK+++      L+  + +   +  + A +K++ +  +
Sbjct: 1089 IDRASKSLLGIINDILDFSKIEAGKLDIESVSFQLETMLEDLSDMFSVKAADKQLELLFA 1148

Query: 690  FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIIST----THTSNEEVILRVRDT 744
             A NIP ++  D   + Q+ +N+++NA+ FT  G ++++S            +   VRD 
Sbjct: 1149 VAPNIPRQLEGDPLRLSQVLINLMNNAVKFTDQG-EVLLSISQLERVDDAITLRFSVRDN 1207

Query: 745  GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
            G+G+T  +  K  K F Q   S   +  GTGLGL + K +V+   G+  + S    G+  
Sbjct: 1208 GIGLTEDQRNKLFKSFSQADTSTTRKYGGTGLGLAICKQLVELMGGEIGVESQFGNGSTF 1267

Query: 805  EII 807
               
Sbjct: 1268 FFT 1270



 Score =  110 bits (276), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 64/516 (12%), Positives = 159/516 (30%), Gaps = 29/516 (5%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNT 142
           F  +I+  G + ++SE + K +G  A +++  +   +     I+  N   + D L+ +N 
Sbjct: 411 FYCSIEPDGQIAQVSEGVEKVLGVSA-ELLKRKYQRMFSDNAINEKNWHYMDDALQGRNV 469

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA---LGKR 199
              +  +   +G    + + +   P+ S N+E        + +         A       
Sbjct: 470 PPHQVEMLDSKGKLRRLDVFM--QPLLSDNQELLSVE--MLFNDVTEQFSAAAWSNAVLE 525

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
              +   + +              +F            +++   +    H     K    
Sbjct: 526 SAPEAMLIVDESGRLVFTNSRCQLLFGYDEAQMLAMSVDQLVPDSIRSHHASLREKFVSE 585

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG- 318
                    +         +  ++  +   G L  ++    +  +     +      +  
Sbjct: 586 GRDRKMGLGMTSDLMALNADGCEFPVEISLGLLPVDADGQRQVAATVRDMTEELKIAQRI 645

Query: 319 ---ENLTPETVDKCPIPFF---VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
              EN     V   P   +   +     + Y + +   +T Y + D IE +      L  
Sbjct: 646 KDSENRFRGLVTNIPGAVYRTRIEDTWIMEYVSDNIGDITGYPAADFIENSKRSFASLI- 704

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
            +     A   +    +++       R   IQ    +   +        ++    +  +G
Sbjct: 705 IEEDLAIASHAIETALAEQRSFEVQYR---IQHRDASIHWVHEKGKAIYDENGVALWFDG 761

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII----NREGIILSTNRAVSKLFGYP 488
              +   ++  + K+     QL +I E+    +  +    NR+      + A     G+ 
Sbjct: 762 SINDITISKAAQEKIAQSQQQLETITESIPSTVYQLHWRSNRDRNFTFLSSACIATLGFH 821

Query: 489 VEDILRKP--FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
            + ++ K       +  +  + +   L+ + S  L  T E        + + L       
Sbjct: 822 RDQVIEKFDLVAECIINDERTHIIEALSGVSSSGLNWTEEFRYRHPMGDIRWLQAGAHGN 881

Query: 547 KLPFSSCYS-LTMHDISEWKQEKNKLSHAKKIAEKE 581
           +L   S      + DI+E KQ   +L+  ++   + 
Sbjct: 882 QLADDSIIWNGYLMDITERKQIDKELA-KREAHFRA 916



 Score = 42.7 bits (99), Expect = 0.23,   Method: Composition-based stats.
 Identities = 22/152 (14%), Positives = 50/152 (32%), Gaps = 4/152 (2%)

Query: 440 TRINKRKMEIEVMQLCSILEATSD--GIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
               +  ++    +   +++  SD      I  +G I   +  V K+ G   E + RK  
Sbjct: 385 EEREQALLDSRGNRFAKLIDGMSDKSFYCSIEPDGQIAQVSEGVEKVLGVSAELLKRKYQ 444

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL- 556
            +F +        HY+ + L        +   L S  + + L + +           S+ 
Sbjct: 445 RMFSDNAINEKNWHYMDDALQGRNVPPHQVEMLDSKGKLRRLDVFMQPLLSDNQELLSVE 504

Query: 557 -TMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
              +D++E        +   + A +      +
Sbjct: 505 MLFNDVTEQFSAAAWSNAVLESAPEAMLIVDE 536


>gi|94264869|ref|ZP_01288644.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
 gi|93454690|gb|EAT04955.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
          Length = 605

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 112/519 (21%), Positives = 228/519 (43%), Gaps = 19/519 (3%)

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365
             P +     E E    +  +      + + S+G   +       +    +   +     
Sbjct: 4   TDPHILLKLTEAEQRFRDVTEAAGEYIWELDSNGLYTFVTKPIETILGVPAEQALGRTP- 62

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
                D     +   +        +R         H    +  + +          +   
Sbjct: 63  ----FDFMPPEEAEWVGAWFTKLVERRE-PFRGLEHCSLKSDGSIVWQRVSGVPILDGAG 117

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
           E     G   +    ++ ++ +E    +L  IL+ T +G   I+ E  +LS N++  K+F
Sbjct: 118 ELRGYRGAALDITQEKLARQALEEREKRLALILDNTVEGFITIDTERRVLSFNKSAEKIF 177

Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRI 543
           GY  +++L +   + +     S  + Y++  L+  +++ +   +   G  K  ++  L++
Sbjct: 178 GYRADEVLGRNVKMLMPDPYHSGHDQYVSNYLTSGVKKIIGIGREVQGRRKTGEIFPLQL 237

Query: 544 IIKK--LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
            + +  +     +  ++ DI+E K+++     AK+ AE  +  KS+FLA +SHE+RTP+ 
Sbjct: 238 AVSETLVGEERLFVGSIQDITERKRQEALQRQAKEAAEAANRSKSEFLANMSHEMRTPMN 297

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
            IIG  ++       P   P+  +Y   I  S   +L ++ND LD++++E+GKM +   P
Sbjct: 298 VIIGLGQLALKSE--PPPPPKLHDYLEKITASATTLLVLINDTLDLARLETGKMAIDQIP 355

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTP 720
             L + +++   L+   A EK + +  + A  +P +++ D   + Q+ +N+ SNAI F+ 
Sbjct: 356 FDLSDILNKLEKLMGQRAAEKGLQLVFAVAPTVPDQMVGDPHRLSQVLINLTSNAIKFSD 415

Query: 721 SGGQIIISTTHTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
            G ++ ++     +      + + VRDTG+G+   +LE  ++PF Q   S   + +GTGL
Sbjct: 416 KG-EVSLNFEMADSTADTLTLRVTVRDTGIGIAPEQLETILQPFTQADGSSTRKYDGTGL 474

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
           GL +A  +V    GK  + S P +G+      PL   + 
Sbjct: 475 GLSIANRLVQLMGGKLEVESEPGQGSSFFFNCPLGRIAQ 513



 Score = 76.2 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/254 (9%), Positives = 72/254 (28%), Gaps = 12/254 (4%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTW 143
           + W +D++G    +++ +   +G  A + +G    D       +        L++R+  +
Sbjct: 29  YIWELDSNGLYTFVTKPIETILGVPAEQALGRTPFDFMPPEEAEWVGAWFTKLVERREPF 88

Query: 144 YGKTTL-WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
            G        +G+   V   ++ +PI     E  G+RG  +      +   R   +  +K
Sbjct: 89  RGLEHCSLKSDGSI--VWQRVSGVPILDGAGELRGYRGAAL--DITQEKLARQALEEREK 144

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSS---LTEYYAHKDDVLKT 256
           + + + +           +  + S           R    +     +     +     + 
Sbjct: 145 RLALILDNTVEGFITIDTERRVLSFNKSAEKIFGYRADEVLGRNVKMLMPDPYHSGHDQY 204

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
               L +  +  +    +                  +    E   ++      +     +
Sbjct: 205 VSNYLTSGVKKIIGIGREVQGRRKTGEIFPLQLAVSETLVGEERLFVGSIQDITERKRQE 264

Query: 317 EGENLTPETVDKCP 330
             +    E  +   
Sbjct: 265 ALQRQAKEAAEAAN 278


>gi|21228875|ref|NP_634797.1| two component system histidine kinase [Methanosarcina mazei Go1]
 gi|20907403|gb|AAM32469.1| Two component system histidine kinase [Methanosarcina mazei Go1]
          Length = 807

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 149/815 (18%), Positives = 288/815 (35%), Gaps = 71/815 (8%)

Query: 40  KKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRT---VRFTWNIDAHGYLK 96
           KK+      F++    + ++ +    ++L+SE  F           VRF    D      
Sbjct: 17  KKQTTELKKFDKGISAEISESTQPEEDFLNSEEKFRILAENSPDIIVRF----DIQSRQL 72

Query: 97  EISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI------GDLLKRQNTWYGKTTLW 150
              +           ++ G    ++      DP            +     T   +    
Sbjct: 73  YFRQAAVDIYSYSQEEIKGKTHNEL----GSDPEKAKFWKEHNEKVFSTGKTETMEFDCI 128

Query: 151 PIEGTNLYVPIDLAALPIYSR-------NREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +    Y    +A   +          +R  +  +         +DN    + KR ++ 
Sbjct: 129 LPQRKKYYFNTLIAPEFVNDEVASVLTISRNVTDVKKTESTLKETLDNLEEMIKKRTEEI 188

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT------------------- 244
                 +K+       E   I    S   ++       S                     
Sbjct: 189 EKAYRSLKESE-KCLAEAQKIAHLGSWNWNIVSNELYWSDEIYRIFGLSPQEFGATYDAF 247

Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
             Y H +D            E                +    +    +  N         
Sbjct: 248 LSYVHPEDRDCVNNAVKGALEGKPYSIDHRIILKGGEERIVHEQGEVIFENGNVPVRMAG 307

Query: 305 HRNHPSLSAYFDEGENLT----PETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDD 359
                +     ++   +        ++    P   +   G +   N +  ++T Y   + 
Sbjct: 308 IVQDITERKKIEKALGMANAYNRSLIEVSLDPLVTIGPDGKITDVNRATEIVTGYFRSEL 367

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
           I                   A +                    I+    +   + +    
Sbjct: 368 IGTD------FSDYFTEPEKAKEGYQYVFQKGLVRDYQLE---IRHKHGHITPVLYNASI 418

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
             ++            +  + +  + K++     L + +E+++D I     +G I S N+
Sbjct: 419 YRDENGRVTGVFAAARDITELKKAEEKIKA----LANAVESSNDAIITGTLDGTITSWNK 474

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
              +++GY  E+++ K  ++    N    +     +I            TL   K+   +
Sbjct: 475 GAEQIYGYLAEEVMGKNVSILEPDNLKGEIKQLFDKIKQGKK--VKRYETLRLKKDGIAV 532

Query: 540 SLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
           ++ + +  +   S     +S    DI+E K  +N L H K++AE  +  KS+FLA +SHE
Sbjct: 533 NVSVTLSPIFDVSGNPVAFSGIARDITEKKITEN-LLHEKQMAEFANRTKSEFLANMSHE 591

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           +RTPL +IIGFS+++  Q +G L N + +   + I  SG  +L+++N +LD+SKIE+ KM
Sbjct: 592 LRTPLNSIIGFSDMLYEQAYGEL-NQKQLRAISNISNSGKHLLNLINGILDLSKIEANKM 650

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715
            L ++   L  ++    +++   A++K I I T   ++I +I AD     +I  N++ NA
Sbjct: 651 ELDYKEFELASSLDLIRNILSPIADKKNIEIETGVDSSISKICADEDRFIRIMFNLVDNA 710

Query: 716 IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           I F+     + I T     E V + V DTG+G+   +  K  KPF Q+ +    + +GTG
Sbjct: 711 IKFSFENSLVKIGTRKK-GELVEITVEDTGIGIKTEDQNKLFKPFSQVNSFSSKKFQGTG 769

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           LGL L K +V+ + G  +  S   KG+      P+
Sbjct: 770 LGLSLVKQIVNLHGGYVWFKSEQGKGSTFAFAIPI 804


>gi|302879489|ref|YP_003848053.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
           ES-2]
 gi|302582278|gb|ADL56289.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
           ES-2]
          Length = 1179

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 119/645 (18%), Positives = 234/645 (36%), Gaps = 32/645 (4%)

Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD 252
             AL   +    + + ++    +  E+    + ++        +++  + L+        
Sbjct: 163 RDALLVSVKGDEASIAQLAVDINRAEQAIPGLPAKAQGVAVYVVRHAQTLLSVARIMPGL 222

Query: 253 VLKTEK---YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
           +          L    +       +      N Y     F  L   +   F Y   +   
Sbjct: 223 LADLSAYKGEHLAAGLDRLYQVHYEQQQRTANIYRLFLLFAALLMLAYSIFVYFRLKVKG 282

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
                     +     +++  I       G++ Y N  F+ ++ Y + + I    G +  
Sbjct: 283 QQLERALAEVSNQQHALNEHAIVSITDVKGDITYVNDKFIEISGYSADELI----GKNHR 338

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
           +      D    + +    ++        +         +   +        +Q  +   
Sbjct: 339 MVNSGQHDQEFFRELWQTVANGRVWHGQVKNRA---KNGSCYWVEATVVPFMDQDGKPYQ 395

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
              +  +    +  + +++ E   L S+++   +G+ +++++G     N     + G+ +
Sbjct: 396 YVSMRTDITAQKAMELQVQSERRLLKSVMDTLGEGVYMLDQDGNCTYMNTEAEDIVGWTI 455

Query: 490 EDILRKPFTVFLEQNTPS-----VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
           E+++ +     L  + P           + +          E       K   L  + I+
Sbjct: 456 EEVVGRNLHDLLHVHRPDGTRVTADECPIRQSTMNKKVYHSEAEYF-QHKNGTLFPIAIV 514

Query: 545 IKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
              +              DISE K  + +L  AK+ AE  S  K DFLA +SHEIRTP+ 
Sbjct: 515 ASPMIDGDLITGSVAAFQDISERKFTERELLRAKESAEAASRAKGDFLATMSHEIRTPMN 574

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
            IIG +E+  +            EY N +  S + +L I+ND+LD SKIESGKM L    
Sbjct: 575 GIIGMTELALDTEMSA----EQREYLNMVKSSADALLTIINDILDFSKIESGKMELESVE 630

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTP 720
             +    + A   + + A +K + +       IP +L  D   ++Q+  N+L NAI F+ 
Sbjct: 631 FDVRNLFASAEKTLAIRAAQKGLELVYDVDGAIPDLLVGDPGRLRQVLTNLLGNAIKFSE 690

Query: 721 SGGQIIISTTH----TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
            G  I +        +    V + V D G+G+   +L    + F Q   S   +  GTGL
Sbjct: 691 HGA-ITLRMKLLMQTSDGLCVRIEVADQGIGIPVDKLAHIFEAFTQADTSTTRKYGGTGL 749

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEI--IFPLYDTSHPHDC 819
           GL ++  +V A  G   + S    G++       P+   + P + 
Sbjct: 750 GLAISSKLVAAMGGDLSVESQVGIGSVFGFTTTLPVA-LNQPSEI 793



 Score = 64.7 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 20/255 (7%), Positives = 69/255 (27%), Gaps = 16/255 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD-ILHIDPNNHIGDLLKRQNTWYGKT 147
            D  G +  ++++  +  G  A ++IG     V+      +    +   +     W+G+ 
Sbjct: 308 TDVKGDITYVNDKFIEISGYSADELIGKNHRMVNSGQHDQEFFRELWQTVANGRVWHGQV 367

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                 G+     ++   +P   ++ +   ++   +              +   +    +
Sbjct: 368 KNRAKNGSCY--WVEATVVPFMDQDGKP--YQYVSMRTDITAQKAMELQVQSERRLLKSV 423

Query: 208 HEIKKGHSSVEKEKYDIFSQQS-------PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
            +       +  +  +     +             +   +  L   +      +  ++ P
Sbjct: 424 MDTLGEGVYMLDQDGNCTYMNTEAEDIVGWTIEEVVGRNLHDLLHVHRPDGTRVTADECP 483

Query: 261 LLTSEESSL---PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
           +  S  +      E E F   N   +       +   +       ++     S   + + 
Sbjct: 484 IRQSTMNKKVYHSEAEYFQHKNGTLFPI-AIVASPMIDGDLITGSVAAFQDISERKFTER 542

Query: 318 GENLTPETVDKCPIP 332
                 E+ +     
Sbjct: 543 ELLRAKESAEAASRA 557



 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/145 (11%), Positives = 37/145 (25%), Gaps = 8/145 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + +D  G    ++ E    +G    +++G  L D+  +   D      D    + +   
Sbjct: 431 VYMLDQDGNCTYMNTEAEDIVGWTIEEVVGRNLHDLLHVHRPDGTRVTADECPIRQSTMN 490

Query: 146 KTTLWPIEGTNLY-----VPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
           K           +      PI + A P+   +   +G                     R 
Sbjct: 491 KKVYHSEAEYFQHKNGTLFPIAIVASPMIDGD-LITG--SVAAFQDISERKFTERELLRA 547

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIF 225
            +        K    +    +    
Sbjct: 548 KESAEAASRAKGDFLATMSHEIRTP 572


>gi|121998929|ref|YP_001003716.1| multi-sensor hybrid histidine kinase [Halorhodospira halophila SL1]
 gi|121590334|gb|ABM62914.1| multi-sensor hybrid histidine kinase [Halorhodospira halophila SL1]
          Length = 1643

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 139/782 (17%), Positives = 274/782 (35%), Gaps = 58/782 (7%)

Query: 66   NYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI--GMRLCDVSD 123
               +      F      V  +W  +    +   S  + + +G  A ++   G R  D+  
Sbjct: 409  EEQNRTEALAFLNGGPVVALSWRPEPGWPVHYASANVEQVLGYTAEELKAPGFRFADLLH 468

Query: 124  ILHIDP-NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFG 182
                   +  I   L        +        +  Y        P Y+ + +    RG+ 
Sbjct: 469  PEDTQRVDREIRAQLADGAAH-FEQLYRVRHRSGGYRWCYDYTSPEYNEDGQLRLLRGY- 526

Query: 183  IVHVNRVDNDPRALGKRLDKKFSHLH---------EIKKGHSSVEKEKYDIFSQQSPPPH 233
            I+           L +  ++               ++       ++  + ++   S    
Sbjct: 527  ILDRTEEQQTLEQLTRSRERLALATESAGLGIWDYDLTSDQLDWDEGMFRLYGVSSEAFG 586

Query: 234  LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293
               ++   +L      +      +     ++ E+++  +     I+  +   +     ++
Sbjct: 587  GTFQDWTRTLMPESRERAQAAFEQAVAYSSTFETTISIR---RPIDGAERILQGQAQIIR 643

Query: 294  NNSKESFEYLSHRNHPSL----SAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPS 347
            + + ++   +      +            E       +  P+   +     G     N +
Sbjct: 644  DETDQAVRVVGVNRDITEQETNRRRLIAEEAKFRGLFELSPVGIAMNDFQTGEFLEFNDA 703

Query: 348  FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
                  Y   +     G LS     P+       + +   R              I  + 
Sbjct: 704  INEPAGYTREE----FGRLSYWDVTPESYMPQEQEQLESMRRTGRYGPFEKEY--IHKDG 757

Query: 408  ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
                 +         +  E +    I  +  +T+  +  ++    +   I + TS G+A+
Sbjct: 758  HRYPVLLHGFRTTTPEGREVI--WSIIQDITETKAAEAALQATKERFEGIFQKTSSGVAV 815

Query: 468  ---IN--REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522
               ++  R+   L  N A  ++     E ++    T          +   L  +      
Sbjct: 816  YRPVDGGRDFEFLEFNPASERINQVSREAVIGGKLTELFPGVVEMGLLGALQRVAGTGHP 875

Query: 523  QTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES 582
               E + +    +E++   R        S        D++E KQ + +       AE+ S
Sbjct: 876  ---EHLPVTDYHDERISGWRENYIFRLSSGEVVAVYDDLTEIKQAQEQ-------AEQAS 925

Query: 583  SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
              KS+FLA +SHEIRTPL A+IG S+++         + R  ++ N +  S  ++L I+N
Sbjct: 926  RAKSEFLANMSHEIRTPLNAVIGLSQLLLETSL----DKRQQDHLNKVLSSSRMLLGIIN 981

Query: 643  DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADL 701
            D+LD SKIESG++ L      L E V    +L     + K++ +  S    IP +L  D 
Sbjct: 982  DILDFSKIESGQLELDTHTFDLHEVVDHLAALFGEVGHRKQLELVYSLPPQIPCVLVGDS 1041

Query: 702  RSVKQIALNILSNAIHFTPSGGQIIISTTH-----TSNEEVILRVRDTGVGMTNYELEKA 756
              + Q+  N+LSNA  FTP GG++ +           +  +   VRDTG+GM+  +L + 
Sbjct: 1042 LRITQVLTNLLSNATKFTPEGGEVEMGIQLVEPPKADSVTLRFFVRDTGIGMSEEQLGRL 1101

Query: 757  MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL--IEIIFPLYDTS 814
             + F Q   S   R  G+GLGL +++ +V+   G     S P +G+    E+  PL    
Sbjct: 1102 FRAFTQADTSTTRRYGGSGLGLVISRRLVERMGGALEATSKPGQGSTFAFELTLPLGTPQ 1161

Query: 815  HP 816
             P
Sbjct: 1162 AP 1163



 Score =  116 bits (290), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 52/516 (10%), Positives = 125/516 (24%), Gaps = 34/516 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMR-LCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
           + A G++   S      +   +  +IG      +           +      +  + G  
Sbjct: 293 VGADGHISRTSRRALSILNTSSEALIGRSVFTLLGCTPGSGCPGDLASAPPLRCPYSGPP 352

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                      +    A        +   G      V + R   D   +    +      
Sbjct: 353 ISADSCELIGALRSGEAYE-TRDLFQAPEGEPVLVDVRIKRAATDGTTILLFQEVSKEEQ 411

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMK----NKVSSLTEYY-------------AHK 250
           +  +            +  +  P   +        +V   T                   
Sbjct: 412 NRTEALAFLNGGPVVALSWRPEPGWPVHYASANVEQVLGYTAEELKAPGFRFADLLHPED 471

Query: 251 DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310
              +  E    L    +   +       +        Y     N   +      +    +
Sbjct: 472 TQRVDREIRAQLADGAAHFEQLYRVRHRSGGYRWCYDYTSPEYNEDGQLRLLRGYILDRT 531

Query: 311 LSAYFDEGENLTPETV----DKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGG 365
                 E    + E +    +   +  + Y    +    +     L    S         
Sbjct: 532 EEQQTLEQLTRSRERLALATESAGLGIWDYDLTSDQLDWDEGMFRLYGVSSEAFGGTFQD 591

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
            +  L         A     +  S          +   +        +        ++  
Sbjct: 592 WTRTLMPESRERAQAAFEQAVAYSS----TFETTISIRRPIDGAERILQGQAQIIRDETD 647

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKL 484
           + +   G+  +  +   N+R++  E  +   + E +  GIA+ + + G  L  N A+++ 
Sbjct: 648 QAVRVVGVNRDITEQETNRRRLIAEEAKFRGLFELSPVGIAMNDFQTGEFLEFNDAINEP 707

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
            GY  E+  R  +     ++        L  +         EK  +   K+     + + 
Sbjct: 708 AGYTREEFGRLSYWDVTPESYMPQEQEQLESMRRTGRYGPFEKEYI--HKDGHRYPVLLH 765

Query: 545 IKKLPFSSC---YSLTMHDISEWKQEKNKLSHAKKI 577
             +             + DI+E K  +  L   K+ 
Sbjct: 766 GFRTTTPEGREVIWSIIQDITETKAAEAALQATKER 801



 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 45/384 (11%), Positives = 108/384 (28%), Gaps = 29/384 (7%)

Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271
           +      ++ + +F        LR+ +  + L       D    T   P  +  +     
Sbjct: 36  RDVVVRTRDGFRLF---LSTMLLRLDHLGADLETPLGRLDLPRATTLSPDASVVDGLRAI 92

Query: 272 QEDFHTINLNQYTKKQYFGTLQNNSKESFEY--LSHRNHPSLSAYFDEGENLTP-ETVDK 328
           +     I L     +        +     +   L+          + +   L P  T+  
Sbjct: 93  RNRGEHICLVDDRGELSGILSYTDLASGLDPNMLAQTQSIGELFRWTQAPLLNPDATLRG 152

Query: 329 CPIPFFVYSHGNLFYANPS--FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
                           +      +LT+   +  +     L   L+A   S    +     
Sbjct: 153 AMAAMREQDQEAAVVVDDERPVGILTQKDIIKLLAAGTDLGCTLEACMSSPVETLHE-QA 211

Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
             ++        R+  +    +       I  ++      N     ++ +  +     R+
Sbjct: 212 SIAEALSFCRQRRIKRVVVVDDAGRLTGVIGQKELVNLYFNQWFALLQEQQDELAQLNRE 271

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL----- 501
           ++     L SI E    G+ ++  +G I  T+R    +     E ++ +     L     
Sbjct: 272 LQESNRALESITEEVPGGLLVVGADGHISRTSRRALSILNTSSEALIGRSVFTLLGCTPG 331

Query: 502 ---------------EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
                            + P +       I +L   +  E   L    E + + + + IK
Sbjct: 332 SGCPGDLASAPPLRCPYSGPPISADSCELIGALRSGEAYETRDLFQAPEGEPVLVDVRIK 391

Query: 547 KLPFSSCYSLTMHDISEWKQEKNK 570
           +        L   ++S+ +Q + +
Sbjct: 392 RAATDGTTILLFQEVSKEEQNRTE 415


>gi|298531136|ref|ZP_07018537.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509159|gb|EFI33064.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 840

 Score =  404 bits (1039), Expect = e-110,   Method: Composition-based stats.
 Identities = 108/532 (20%), Positives = 196/532 (36%), Gaps = 24/532 (4%)

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYK 355
                  +      L       +       +        +     +  AN  F  L+ Y 
Sbjct: 127 GVIVHARNITEQKRLEEALRRSQQYYRAIFETTGTAQVIIEEDTTISLANSRFEGLSGYC 186

Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
             D              P+  +          R D            I  +         
Sbjct: 187 RQDIEGRKSWTE--FVHPQDLEQMR-HFHFSRRKDDYTAPRQYEFRFIDAHGHEHHIYLC 243

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
           I        P          +  + +  +  ++    QL +I ++  D I ++  EG I 
Sbjct: 244 IDTI-----PGTTQSIASLMDITERKQAENALQESRAQLQAITDSAQDAIVLMGPEGEIA 298

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNT-PSVMNHYLTEILSLDLRQTLEK--ITLGS 532
             N     +FGY  E+I+ K     L                        + K       
Sbjct: 299 YWNPMAESIFGYTAEEIVGKDLHNILAPARYHEQHLKAFQHFQQTGRGDAIGKTIELSAL 358

Query: 533 TKEEKLLSLRIIIKKLPFSSCY--SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
            ++ +   + + +  +   + +     + DI+  K  + K+  A+  AE  +  KS+FLA
Sbjct: 359 DRDGREFPISLSLSAVSLQNRWHAVGIVRDITRQKDAEEKIVKARDEAEAANRAKSEFLA 418

Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650
            +SHEIRTP+  I+G  ++++        +    +Y      S   +  +++D+LD+S+I
Sbjct: 419 NMSHEIRTPINGIMGMMQLLEATSL----DVEQAQYVQMGLTSARRLTRLLSDILDLSRI 474

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIAL 709
           E+G+M +  E   + +       L  +   EK I +  S    +P IL  D   ++QI  
Sbjct: 475 EAGQMEIRQEEFDVRKLCFSVTELFMVTCREKNIALEYSLDPQLPEILLGDETRLQQILF 534

Query: 710 NILSNAIHFTPSGGQIIIST----THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           N++ NA+ FT  G ++ ++         + +V+L V DTG+GMT +      KPF Q  N
Sbjct: 535 NLVGNALKFTEQG-RVQVNWHLMKRRERDIQVLLTVSDTGIGMTPHRAGDLFKPFVQAEN 593

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
           +   + +G GLGL + K +V+   G+  + S P  G+   I+ PL     P 
Sbjct: 594 AYTRKYQGAGLGLSIVKRLVELMHGEVTVESMPDAGSTFNILLPLKVPEQPE 645



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 37/273 (13%), Positives = 78/273 (28%), Gaps = 9/273 (3%)

Query: 310 SLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
           +      E        V     P  FV  +      N ++L        + +     + +
Sbjct: 14  TQDEPSQETLRKYQAIVSTVKEPMSFVDRNYVYQAVNQAYLDTFAGSRKEIVGHT--VES 71

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
           LL A    +    +       +       +   T          ++       ++  +  
Sbjct: 72  LLGAHVFDNIVKPRLD--RCLEGKEEHYESWFDT---PAGIQECLSVFFHPCLDENGQIQ 126

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
                     + +  +  +        +I E T     II  +  I   N     L GY 
Sbjct: 127 GVIVHARNITEQKRLEEALRRSQQYYRAIFETTGTAQVIIEEDTTISLANSRFEGLSGYC 186

Query: 489 VEDILRK-PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
            +DI  +  +T F+       M H+       D     +              + + I  
Sbjct: 187 RQDIEGRKSWTEFVHPQDLEQMRHFHFSRRKDDYTAPRQYEFRFIDAHGHEHHIYLCIDT 246

Query: 548 LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
           +P ++    ++ DI+E KQ +N L  ++   + 
Sbjct: 247 IPGTTQSIASLMDITERKQAENALQESRAQLQA 279



 Score = 76.2 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/386 (8%), Positives = 95/386 (24%), Gaps = 24/386 (6%)

Query: 82  TVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV--SDILHIDPNNHIGDLLKR 139
            + F    D +   + +++    T      +++G  +  +  + +        +   L+ 
Sbjct: 36  PMSFV---DRNYVYQAVNQAYLDTFAGSRKEIVGHTVESLLGAHVFDNIVKPRLDRCLEG 92

Query: 140 QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199
           +     ++      G    + +     P    N +  G                    +R
Sbjct: 93  KEEH-YESWFDTPAGIQECLSVFFH--PCLDENGQIQGV--IVHARNITEQKRLEEALRR 147

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR---MKNKVSSLTEYYAHKDDVLKT 256
             + +  + E       + +E   I    S    L     ++     +         L+ 
Sbjct: 148 SQQYYRAIFETTGTAQVIIEEDTTISLANSRFEGLSGYCRQDIEGRKSWTEFVHPQDLEQ 207

Query: 257 EK----YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
            +            +    +  F   + +++       T+   ++     +         
Sbjct: 208 MRHFHFSRRKDDYTAPRQYEFRFIDAHGHEHHIYLCIDTIPGTTQSIASLMDITERKQAE 267

Query: 313 AYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
               E         D        +   G + Y NP    +  Y + + +     L  +L 
Sbjct: 268 NALQESRAQLQAITDSAQDAIVLMGPEGEIAYWNPMAESIFGYTAEEIVGK--DLHNILA 325

Query: 372 APKLSDNNAIKPVMLYR-SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
             +  + +        +      I  +  L  +  +              A         
Sbjct: 326 PARYHEQHLKAFQHFQQTGRGDAIGKTIELSALDRDGREF---PISLSLSAVSLQNRWHA 382

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCS 456
            GI  +    +  + K+     +  +
Sbjct: 383 VGIVRDITRQKDAEEKIVKARDEAEA 408



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/144 (12%), Positives = 40/144 (27%), Gaps = 14/144 (9%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +   G +   +       G  A +++G  L ++          H+      Q T  G   
Sbjct: 291 MGPEGEIAYWNPMAESIFGYTAEEIVGKDLHNILAPARYH-EQHLKAFQHFQQTGRGDAI 349

Query: 149 -------LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
                      +G    + + L+A+ + +R      +   GIV       D      +  
Sbjct: 350 GKTIELSALDRDGREFPISLSLSAVSLQNR------WHAVGIVRDITRQKDAEEKIVKAR 403

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIF 225
            +    +  K    +    +    
Sbjct: 404 DEAEAANRAKSEFLANMSHEIRTP 427


>gi|326317893|ref|YP_004235565.1| multi-sensor hybrid histidine kinase [Acidovorax avenae subsp. avenae
            ATCC 19860]
 gi|323374729|gb|ADX46998.1| multi-sensor hybrid histidine kinase [Acidovorax avenae subsp. avenae
            ATCC 19860]
          Length = 1624

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 126/744 (16%), Positives = 257/744 (34%), Gaps = 33/744 (4%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI-DPNNHIGDLLKRQNTWYGKT 147
             DA G +  ++ +     G    ++ G +   V+      +    +   L     W G+ 
Sbjct: 368  TDAEGRIDWVNSQYEANTGYSLDEVRGRKPSLVASGQTPPETYRQMWSRLIAGLPWRGEF 427

Query: 148  TLWPIEGTNLYVPIDLAALPIYSRNR---EFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
                 +GT  +    L+  P++          G        +       R   +  D   
Sbjct: 428  INQRQDGTIYHDEATLS--PVFDDRGRRIAIVGLHENVTERITAHQELQRRERELNDALA 485

Query: 205  SHLHEIKKGHSSVEKEKYDIFSQQSP---PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
                        +      +            ++         E     +++ +     +
Sbjct: 486  QQTAIFDNAPPVLIVADDRLLRFNPACLELLGVQPGQLEGRRVETIFGGEELHRRFMARI 545

Query: 262  LTSEESSLPEQEDFHTINLNQYTKKQYFG----TLQNNS-KESFEYLSHRNHPSLSAYFD 316
                E+    +E    +  +    +         LQ  +    +            A   
Sbjct: 546  EGRLEAGESVREVARLVRRDGTVFEARLSGRLLPLQGYAHACIWVVEDVTEARRAEAAMR 605

Query: 317  EGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYK-SVDDIEIAGGLSTLLDAPK 374
            E         +   +  F           +     L         + +   + +L    +
Sbjct: 606  EMNERLILAQEAGRVGVFDLDLARDHLVFSEKLGSLYGLPHRPQGLRLVDWMDSLHMEDR 665

Query: 375  LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
                  +   +  R+     +       +     +   +      + +         G++
Sbjct: 666  PRVQARLDAALAGRATGLQDS-----WRVVRPDGSERWLLCSARIERDAEGRARRLIGVQ 720

Query: 435  PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
             +  + +  + ++  ++    ++++A    +   + +G     NRA  + FG   ED L 
Sbjct: 721  VDVHEQKQLEARLADQLAFQQALVDAIPIPLFHKDGDGRYRGFNRAYEEAFGIRREDFLG 780

Query: 495  KPFTV--FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE--EKLLSLRIIIKKLPF 550
            K      FL Q   +        I +       E     +  E    L  +    +    
Sbjct: 781  KTVHEAGFLNQAERAEFEADARTIRAGGPPIHKEVDLTYADGEIHHTLFWMHGFQRPDGS 840

Query: 551  SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
                  T+ DI++ ++ + +L  AK++AE+ ++ KS+FLA +SHEIRTP+ AIIG S + 
Sbjct: 841  PGGSIGTLVDITDRQRAERELRRAKELAEETTALKSNFLANMSHEIRTPMNAIIGMSHLA 900

Query: 611  KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
                  P    R  +Y   I ++G  +L ++ND+LD S+IE+GK+ +  +P  LD  +  
Sbjct: 901  LKSGLTP----RQADYVAKIQQAGQHLLGVINDILDFSRIEAGKLVVEKQPFMLDRVLEG 956

Query: 671  AISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIIS 728
               +V   A  K + +    A ++P  ++ D   + QI +N  +NAI FT  G   + + 
Sbjct: 957  MADVVGYKAGVKGLELVLDVAPDVPPHLVGDALRLGQILINFANNAIKFTERGEIHVRVR 1016

Query: 729  TTHTSNEEV--ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
                    V     VRDTG+G+   ++ +  + F Q   S   R  G+GLGL ++K + +
Sbjct: 1017 VVERHGRRVLLRFEVRDTGIGVAPEQMGRLFQSFQQADASTTRRFGGSGLGLAISKNLAE 1076

Query: 787  ANMGKFYIFSTPAKGTLIEIIFPL 810
               G+    S   +G+   ++ PL
Sbjct: 1077 LMGGEVGAESAVGEGSTFWVMLPL 1100



 Score = 90.9 bits (224), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 42/467 (8%), Positives = 108/467 (23%), Gaps = 36/467 (7%)

Query: 155 TNLYVPIDLAALPIYSRNR---EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
           + +   + +AA+  +       E  G  G             +  G  L    + L   +
Sbjct: 35  SAIGAWLAVAAVAEWREAGRAQEREGLLG-----HAAEVLMGQTAGSPLLGAVALLGLSE 89

Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271
               +V        + ++      ++ +      Y  +    +   + P   +    L  
Sbjct: 90  PALKAVALGTLPPNAPEALARLAVVRGRFLLSGVYVLNAGGRVVAHETPASPALGMDLSH 149

Query: 272 QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA-----YFDEGENLTPETV 326
           +  F              G+   +    +    +      S                  +
Sbjct: 150 RPYFLQAMRGAVNVYPALGSNSQDRGLYYAAPLYEGDTPASVIVGVVLVKMSFEPVETQL 209

Query: 327 DKCPIPFFVYSHGNLFYANPSFLLLTKYKSV------DDIEIAGGLSTLLDAPKLSDNNA 380
            +   P  + S   + +A                   D I       TL D         
Sbjct: 210 QRSGYPMALLSPQGVAFAATQPEWRYAIAPPLTQERIDAIRRQRQFGTLFDNGVAQALPF 269

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD- 439
                         A   R             +           P+           +  
Sbjct: 270 RPDAREAVVGGVRYAVERRNLEWHDPDGPWQLVMLDDLHALLPAPQRWQIGVGVFALLVV 329

Query: 440 ---------TRINKRKMEIEVMQ-LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
                        +  + +E  + L + L+++   + I + EG I   N       GY +
Sbjct: 330 LGGMLLDMMRHRARMALAMERFRVLGAALQSSPVAVVITDAEGRIDWVNSQYEANTGYSL 389

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
           +++  +  ++     TP      +   L   L        +   ++  +      +  + 
Sbjct: 390 DEVRGRKPSLVASGQTPPETYRQMWSRLIAGLPWRG--EFINQRQDGTIYHDEATLSPVF 447

Query: 550 FSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
                         +++E      +L   ++      + ++      
Sbjct: 448 DDRGRRIAIVGLHENVTERITAHQELQRRERELNDALAQQTAIFDNA 494


>gi|86606313|ref|YP_475076.1| sensory box histidine kinase/response regulator [Synechococcus sp.
            JA-3-3Ab]
 gi|86554855|gb|ABC99813.1| sensory box histidine kinase/response regulator [Synechococcus sp.
            JA-3-3Ab]
          Length = 1459

 Score =  404 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 120/714 (16%), Positives = 244/714 (34%), Gaps = 42/714 (5%)

Query: 109  YAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPI 168
             A + +G  L ++      +             T         ++G   +   +   +P+
Sbjct: 368  PAERHLGRSLQEILPPALAEQRLFYVQQALATQTQQRYEYSIEVQGEVRHE--EARIVPL 425

Query: 169  YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228
             S+           IV             K  ++    + E           +    S  
Sbjct: 426  NSQE-------VLVIVRDITEAKQAELALKAAEQLQRAILEAIPDLIFRLDSQGICLSFI 478

Query: 229  SPPPHLRMKN---KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTK 285
            S    L   +    V    +     +   +   +        +    +    I      +
Sbjct: 479  SGGEVLLYGSPDTYVGRSLQELLPPELAERRLFFVQQAIATQTRQRYDQSIEIEGETRHE 538

Query: 286  KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV--YSHGNLFY 343
            +     L              +         E E       +   +   +     G +  
Sbjct: 539  EVRIVPLNPQEVVVIVRD-VTDRVRSQQAVQESEQKFRALFENAAVAILIRHAETGEILE 597

Query: 344  ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403
            AN   +    + S++++                     +   L           +     
Sbjct: 598  ANSQAIAAYGFSSLEELRAFDACE----QSPYRRALQGREFALQPYLEQARQQGSARFEW 653

Query: 404  QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
            QW R++   +    F +               +    +  + ++E              D
Sbjct: 654  QWQRQDGRVVWEDVFVQPLVLRGIPCWVFTAVDITARKSAEAELEQ-------FFSVALD 706

Query: 464  GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
             + I + +G     NRA     GY ++++  +PF  ++           + +++      
Sbjct: 707  LLCIADAQGYFRRLNRAWETTLGYSLQELQSRPFLEWVHPEDVPATQAAMQQLVEEKRLD 766

Query: 524  TLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
                         + +  R  +      S       DI+  KQ + ++  A + AE  + 
Sbjct: 767  HFVNRYRTQDGSYRFIEWRASL----AGSLVYAAGRDITLAKQAQEQMKAAMEAAEAANR 822

Query: 584  HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
             KS+FLA +SHEIRTP+ AI+G + ++ +       + +  ++   I     ++L ++ND
Sbjct: 823  AKSEFLATISHEIRTPINAIMGMAGLLLDTSL----DAQQRDWVQTIRYGSEVLLSLIND 878

Query: 644  LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLR 702
            +LD SKIES K+ L   P SL + + E + L+   A  K + +       +P  ++ D  
Sbjct: 879  ILDFSKIESQKLELEETPFSLPQLMEELLDLMAAQAQSKDLELVAWVDPALPATLVGDPN 938

Query: 703  SVKQIALNILSNAIHFTPSGGQIIISTTHTSNE------EVILRVRDTGVGMTNYELEKA 756
             ++QI  N+LSNAI FTP G +++++      +       V  +V+DTG+G+   + ++ 
Sbjct: 939  RLRQILANLLSNAIKFTPQG-EVVVTVEAQEQDPQAQVQWVSFQVQDTGIGIPPEKQDRL 997

Query: 757  MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             KPF Q+ +S   +  GTGLGL +++ +     G  ++ S P +G+      PL
Sbjct: 998  FKPFSQVDSSISRQYGGTGLGLAISQRLCQLMGGTIWVQSQPGQGSTFGFRIPL 1051



 Score = 75.8 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 47/407 (11%), Positives = 104/407 (25%), Gaps = 10/407 (2%)

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244
             +       AL   LD  +            +    +   + +        + ++    
Sbjct: 67  TPSPEARFRAALEASLDAIYLLEAVRDPVTREILDFVFVDVNAKGEELISLQRRQIIGQR 126

Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ-YFGTLQNNSKESFEYL 303
                  +             E+ +P +E+F             +   +           
Sbjct: 127 LCELLPINRWGGFFEKYKRVVETGIPLEEEFPISGQPGLKASWIHHQVVPVGDGILITSR 186

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEI 362
                  +    +  E       +  P   F +   G +    PS  + T++     +  
Sbjct: 187 DISEQVQIKQALEASELRYRALYEAIPDLIFEIDPEGLILNCKPSPYVPTQHPPEFCVGR 246

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
                 +  +        +    L       +     L     N        +       
Sbjct: 247 RAQ--DVFPSSFGEQYQLLAGRALSTQTPQYLEYEMVLPAAAANESEPAIRRYQKACVVA 304

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
              + +       +    +  +  +        +IL+A  D I  +N +GI LS+     
Sbjct: 305 YGRDRVYVL--VRDITKRKEAELALREMEATQRAILQAIPDLILRLNSQGICLSSIPGGD 362

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
                P E  L +     L          Y+ + L+   +Q  E        + ++    
Sbjct: 363 VHLCCPAERHLGRSLQEILPPALAEQRLFYVQQALATQTQQRYEYSIEV---QGEVRHEE 419

Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
             I  L  S    + + DI+E KQ +  L  A+++         D +
Sbjct: 420 ARIVPL-NSQEVLVIVRDITEAKQAELALKAAEQLQRAILEAIPDLI 465



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/311 (11%), Positives = 75/311 (24%), Gaps = 19/311 (6%)

Query: 285 KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNL-FY 343
            +   G+L           +        A  +   +     ++    P        +   
Sbjct: 48  FRGILGSLSRRFPFQPPRGTPSPEARFRAALEASLDAIY-LLEAVRDPVTREILDFVFVD 106

Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403
            N     L   +    I         L      +          R   T I         
Sbjct: 107 VNAKGEELISLQRRQIIGQR------LCELLPINRWGGFFEKYKRVVETGIPLEEEFPIS 160

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
                 +  +        +             +  +    K+ +E   ++  ++ EA  D
Sbjct: 161 GQPGLKASWIHHQVVPVGDG------ILITSRDISEQVQIKQALEASELRYRALYEAIPD 214

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
            I  I+ EG+IL+   +      +P E  + +        +            LS    Q
Sbjct: 215 LIFEIDPEGLILNCKPSPYVPTQHPPEFCVGRRAQDVFPSSFGEQYQLLAGRALSTQTPQ 274

Query: 524 TLEKITLGS-----TKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578
            LE   +         E  +   +             + + DI++ K+ +  L   +   
Sbjct: 275 YLEYEMVLPAAAANESEPAIRRYQKACVVAYGRDRVYVLVRDITKRKEAELALREMEATQ 334

Query: 579 EKESSHKSDFL 589
                   D +
Sbjct: 335 RAILQAIPDLI 345



 Score = 43.1 bits (100), Expect = 0.22,   Method: Composition-based stats.
 Identities = 26/234 (11%), Positives = 65/234 (27%), Gaps = 9/234 (3%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           DA GY + ++     T+G    ++      +      +         L  +         
Sbjct: 712 DAQGYFRRLNRAWETTLGYSLQELQSRPFLEWVHPEDVPATQAAMQQLVEEKRLDHFVNR 771

Query: 150 WPIEGTNLY---VPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
           +  +  +         LA   +Y+  R+ +  +         ++    A   + +   + 
Sbjct: 772 YRTQDGSYRFIEWRASLAGSLVYAAGRDITLAKQAQEQMKAAMEAAEAANRAKSEFLATI 831

Query: 207 LHEIKK------GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
            HEI+       G + +  +      Q+     +R  ++V             ++++K  
Sbjct: 832 SHEIRTPINAIMGMAGLLLDTSLDAQQRDWVQTIRYGSEVLLSLINDILDFSKIESQKLE 891

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
           L  +  S     E+   +   Q   K        +       +   N       
Sbjct: 892 LEETPFSLPQLMEELLDLMAAQAQSKDLELVAWVDPALPATLVGDPNRLRQILA 945


>gi|75910023|ref|YP_324319.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
            29413]
 gi|75703748|gb|ABA23424.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
            29413]
          Length = 1297

 Score =  404 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 114/677 (16%), Positives = 229/677 (33%), Gaps = 44/677 (6%)

Query: 165  ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI---------KKGHS 215
            A P+   +    G    G            +L ++  +      +             + 
Sbjct: 491  ATPLCDPDGNVRGV--IGAFLDVTERQQLMSLLQQKQEWLDLAQKSGKIGSFDWKLASNI 548

Query: 216  SVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDF 275
            ++  ++ +      P          +     +      +K E   LL +           
Sbjct: 549  NIWSQELEEIYGLQPGEFGGTFEDWA--KRVHPDDLARVKVELQELLNTGSKEFFSDFRI 606

Query: 276  HTINLNQYTKKQYFGTLQNNSKESFEYLSH----RNHPSLSAYFDEGENLTPETVDKCPI 331
               + +    +       ++  +    +             A   + E    + +    I
Sbjct: 607  IRQDGSLCWLQSRARVFYDDHGQPLRMVGVNIDVTERKQAEAALQQSEARLKQLLQSSII 666

Query: 332  PFFVYSHGNLFYANPSFLLLTKYKSVDDI-EIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390
                     + +AN +FL +  Y   D +                 D   ++ V+     
Sbjct: 667  GIIEADSERINFANDAFLKIVGYTQEDLLTGKLRWQDMTPLEYSELDQAKVQEVINA--- 723

Query: 391  RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450
              CI        I+ +      +       A      +       +    +  +  ++  
Sbjct: 724  GFCIPFEKEY--IRKDGSRVPIL----LGAARLSSSPLTWVCFILDLTARKQAEAALQQS 777

Query: 451  VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
             +   ++ +       I    G     N+      G  +E    + +   L  +      
Sbjct: 778  ELMFRTLADTMPQMFWITQPNGYHEYFNQRWYDYTGTTLEQTQGEGWQKILHPDDVQRTI 837

Query: 511  HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWK- 565
                + L       +E        + +          L   +     +  +  DI + K 
Sbjct: 838  EQWQDSLDTGKDYDIEYRLR-RAADGEYRWHLGRAFPLRDENGQMVKWFGSCTDIHDQKL 896

Query: 566  ------QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
                  Q   +   A+   E+ +  K DFLA VSHE+R+PL  I+G+++++K+++   L 
Sbjct: 897  AIEERAQAWEQERAARIELERANRMKDDFLAIVSHELRSPLNPILGWAKLLKSRKLDAL- 955

Query: 620  NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
              +  +    I+R+  L   +++DLLD+S+I  GK++L+   V L   +  A+  V+L A
Sbjct: 956  --KTNQALEVIERNAKLQAGLIDDLLDVSRILRGKLSLNVCTVDLVTTIEAALETVRLTA 1013

Query: 680  NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
              K I I+T    ++ R+  D   ++Q+  N+LSNA+ FTP GG+I +           +
Sbjct: 1014 ESKSIHIQTDLTASVCRVEGDPNRLQQVVWNLLSNAVKFTPEGGEIEVKLERV-GSLAHI 1072

Query: 740  RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TP 798
            +VRDTG G++   L    + F Q       +  G GLGL + + +V+ + G   + S   
Sbjct: 1073 QVRDTGKGISLDFLPYVFERFRQADEVTTRKFGGLGLGLAIVRHLVELHGGSVQVTSPGE 1132

Query: 799  AKGTLIEIIFPLYDTSH 815
              GT   +  PL   S 
Sbjct: 1133 GLGTTFTVKLPLVAVSQ 1149



 Score =  115 bits (289), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 49/535 (9%), Positives = 156/535 (29%), Gaps = 42/535 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMR---LCDVSDILHIDPNNHIGDLLKRQNT 142
            W  D+ G  + ++ +L + +G    ++         +    + I+          +Q  
Sbjct: 135 IWIFDSEGKTEYVNHQLAQMLGYSVEQISKCSIFNFLEPQARVEIEQWLEQQHKYHQQTK 194

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
                 L   +G +L+V + L++  I  ++ +FS      ++          A      +
Sbjct: 195 QQFDLRLQRHDGASLWVIVSLSS--ILDKHGQFS--SAIAMLTDITEHKQEPAKPDLERQ 250

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH-----------KD 251
           +   + +I      +   K  +         +  ++          H             
Sbjct: 251 RLRAILDILPMGVVISDAKGQLLEINPGAKAIWGEDAPLLDNTSQYHQYKGWWPDTGQPL 310

Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
              +      L + E+ + E+ D  T N  + T       + + +      ++     + 
Sbjct: 311 TAEEWTLARTLATGEAIIGEEIDIETFNGERKTILNSAVPICDATGTIVNAITVNVDITE 370

Query: 312 SAYFDEGENLTPET-----------VDKCPIPFFVYSHG--NLFYANPSFLLLTKYKSVD 358
               +     +              ++  P   ++      +    N +   + +  +  
Sbjct: 371 RKRVEAALRQSEALAKARAEELETIMETVPAAVWIAHDPHCHSMSVNRAAYEMMRVPAGS 430

Query: 359 DI---EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
            +     +GG        K   +  +  + + ++  T     A +  + ++ E+   +  
Sbjct: 431 VMTATPASGGYPFPFKIQKNGQDVPLNELAMQQAGLTGQEVEAEVEFV-FSSEDVRHIYG 489

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
                 +         G   +  + +     ++ +   L    ++   G         I 
Sbjct: 490 KATPLCDPDGNVRGVIGAFLDVTERQQLMSLLQQKQEWLDLAQKSGKIGSFDWKLASNIN 549

Query: 476 STNRAVSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
             ++ + +++G    +     + +   +  +  + +   L E+L+   ++          
Sbjct: 550 IWSQELEEIYGLQPGEFGGTFEDWAKRVHPDDLARVKVELQELLNTGSKEFFS-DFRIIR 608

Query: 534 KEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
           ++  L  L+   +                 D++E KQ +  L  ++   ++    
Sbjct: 609 QDGSLCWLQSRARVFYDDHGQPLRMVGVNIDVTERKQAEAALQQSEARLKQLLQS 663



 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 38/317 (11%), Positives = 96/317 (30%), Gaps = 23/317 (7%)

Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKY 354
              S          +      + +      ++      +++   G   Y N     +  Y
Sbjct: 98  LISSLNLQVRTAREASEVQLAKLKVNYRHLLETANEGIWIFDSEGKTEYVNHQLAQMLGY 157

Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
            SV+ I      + L    ++     ++    Y    T      RL     +   SL + 
Sbjct: 158 -SVEQISKCSIFNFLEPQARVEIEQWLEQQHKYHQQ-TKQQFDLRLQR---HDGASLWVI 212

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII 474
                  ++  +      +  +  + +    K ++E  +L +IL+    G+ I + +G +
Sbjct: 213 VSLSSILDKHGQFSSAIAMLTDITEHKQEPAKPDLERQRLRAILDILPMGVVISDAKGQL 272

Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY------LTEILSLDLRQTLEKI 528
           L  N     ++G     +         +   P            L   L+      + + 
Sbjct: 273 LEINPGAKAIWGEDAPLLDNTSQYHQYKGWWPDTGQPLTAEEWTLARTLATGEA-IIGEE 331

Query: 529 TLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSH 584
               T   +  ++      +  ++   +       DI+E K+ +  L  ++ +A+  +  
Sbjct: 332 IDIETFNGERKTILNSAVPICDATGTIVNAITVNVDITERKRVEAALRQSEALAKARAEE 391

Query: 585 KSDFLARV------SHE 595
               +  V      +H+
Sbjct: 392 LETIMETVPAAVWIAHD 408



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 59/160 (36%), Gaps = 9/160 (5%)

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQL----CSILEATSDGIAIINREGIILSTNRAVSKLF 485
              I   ++  R  +   E+++ +L      +LE  ++GI I + EG     N  ++++ 
Sbjct: 96  AVLISSLNLQVRTAREASEVQLAKLKVNYRHLLETANEGIWIFDSEGKTEYVNHQLAQML 155

Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
           GY VE I +     FLE      +  +L +      +   +        +   L + + +
Sbjct: 156 GYSVEQISKCSIFNFLEPQARVEIEQWLEQQHKYHQQTKQQFDLRLQRHDGASLWVIVSL 215

Query: 546 KKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAEKE 581
             +             + DI+E KQ +      ++   + 
Sbjct: 216 SSILDKHGQFSSAIAMLTDITEHKQ-EPAKPDLERQRLRA 254



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 37/332 (11%), Positives = 93/332 (28%), Gaps = 29/332 (8%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMI-GM-RLCDVSDILHIDPN-NHIGDLLKRQNTWY 144
             D+   +   ++   K +G     ++ G  R  D++ + + + +   + +++       
Sbjct: 670 EADSE-RINFANDAFLKIVGYTQEDLLTGKLRWQDMTPLEYSELDQAKVQEVINAGFCIP 728

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            +      +G+   VPI L A  + S             +          A  ++ +  F
Sbjct: 729 FEKEYIRKDGS--RVPILLGAARLSSSP-----LTWVCFILDLTARKQAEAALQQSELMF 781

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDD--VLKTEKY 259
             L +       + +                   ++       +   H DD      +  
Sbjct: 782 RTLADTMPQMFWITQPNGYHEYFNQRWYDYTGTTLEQTQGEGWQKILHPDDVQRTIEQWQ 841

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH-------PSLS 312
             L + +    E       +            L++ + +  ++                 
Sbjct: 842 DSLDTGKDYDIEYRLRRAADGEYRWHLGRAFPLRDENGQMVKWFGSCTDIHDQKLAIEER 901

Query: 313 AYFDEGENLTPETVDKCPIP----FFVYSHGNLFYANP--SFLLLTKYKSVDDIEIAGGL 366
           A   E E      +++          + SH      NP   +  L K + +D ++    L
Sbjct: 902 AQAWEQERAARIELERANRMKDDFLAIVSHELRSPLNPILGWAKLLKSRKLDALKTNQAL 961

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398
             +    KL        + + R  R  ++ + 
Sbjct: 962 EVIERNAKLQAGLIDDLLDVSRILRGKLSLNV 993



 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/368 (8%), Positives = 80/368 (21%), Gaps = 14/368 (3%)

Query: 56   DQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIG 115
            D      +      SE  F          F W    +GY +  ++      G    +  G
Sbjct: 763  DLTARKQAEAALQQSELMFRTLADTMPQMF-WITQPNGYHEYFNQRWYDYTGTTLEQTQG 821

Query: 116  MRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREF 175
                 +     +                Y             Y      A P+   N + 
Sbjct: 822  EGWQKILHPDDVQRTIEQWQDSLDTGKDYDIEYRLRRAADGEYRWHLGRAFPLRDENGQM 881

Query: 176  SGFRGFGIVHVNRVDNDP-RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP--P 232
               + FG                +  +++ +   E+++ +   +     +  +   P  P
Sbjct: 882  V--KWFGSCTDIHDQKLAIEERAQAWEQERAARIELERANRMKDDFLAIVSHELRSPLNP 939

Query: 233  HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL 292
             L     + S        +  L+  +              +    +             +
Sbjct: 940  ILGWAKLLKSRKLDALKTNQALEVIERNAKLQAGLIDDLLDVSRILRGKLSLNVCTVDLV 999

Query: 293  QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD--KCPIPFFVYSHGNLFYANPSFLL 350
                             S+    D   ++     D  +     +      + +      +
Sbjct: 1000 TTIEAALETVRLTAESKSIHIQTDLTASVCRVEGDPNRLQQVVWNLLSNAVKFTPEGGEI 1059

Query: 351  LTKYKSVDDIEIAG------GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
              K + V  +          G+S                V   +     +  +   H ++
Sbjct: 1060 EVKLERVGSLAHIQVRDTGKGISLDFLPYVFERFRQADEVTTRKFGGLGLGLAIVRHLVE 1119

Query: 405  WNRENSLA 412
             +  +   
Sbjct: 1120 LHGGSVQV 1127


>gi|144900563|emb|CAM77427.1| PAS [Magnetospirillum gryphiswaldense MSR-1]
          Length = 1382

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 131/677 (19%), Positives = 253/677 (37%), Gaps = 49/677 (7%)

Query: 164 AALPIYSRNREFSGF--------RGF-----GIVHVNR---VDNDPRALGKRLDKKFSHL 207
           A  P+++ + E  G         R F      ++                ++ ++    +
Sbjct: 114 AGAPLHAPDGERVGTLCVIDPKPRDFSAEDSDVLRDLANCVEGELSLTHIRKSERFLKAI 173

Query: 208 HEIKKGHSSVEKEKYDIFSQQSP--PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
            +   G  +   +        +P      +  + +          + +    +  +  + 
Sbjct: 174 SDAMPGLVAYWDKDLVCRFANTPYLEWFGKPADAIIGTLMPDLLGERLFAMNQSYIQGAL 233

Query: 266 ESSLPEQEDFHTINLNQYTKKQY-----FGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
                  E   T                  +    +                    + EN
Sbjct: 234 AGQPQHFERTLTKADGSIGYTWANYVPDMDSYGKVAGFFVLVTDVTPMKEAERQIRDAEN 293

Query: 321 LTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
                ++        +   G +   NP+ + L  Y   + +     +  L+  P  S ++
Sbjct: 294 RMRTILNNVMDGIITIDGKGIVISVNPAAISLFGYSGEEVVGQN--VKMLMPEPNRSSHD 351

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
                     +   I     L  +  +         I   + +         G+  +  +
Sbjct: 352 GYLARYQSTGESRAIGVGRELEGLTKDGRVFPMELTITEVEIDGQRM---FVGLVRDITE 408

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
            +           +  +I+EA+SD I   + +GI+ S N A   LFGY  E+++  P + 
Sbjct: 409 RKSIASI----QARYMAIIEASSDAIMSKSLDGIVTSWNPAAEALFGYTAEEMIGTPMSR 464

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL--- 556
            +           L  I   +        T    K  ++  + + +  +   +   +   
Sbjct: 465 LIPPGREDEEAQILARIRRGEY--IDHFETFRQRKNGQVFPISVTLSPIRDETGTLMGAS 522

Query: 557 -TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
               DI+E KQ + +   A+  AE+ +  KSDFLA +SHEIRTP+ AIIG + + +    
Sbjct: 523 KIARDITERKQAEEETRLARIAAEEANRTKSDFLANMSHEIRTPMNAIIGMTHLAQRTN- 581

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
                P+   Y   I  +   +L I+ND+LD SKIE+GK++L   P SLD+ +   + +V
Sbjct: 582 ---PTPKQKGYLTKIGNAAEALLGIINDILDFSKIEAGKLDLESIPFSLDDVLGNLVDMV 638

Query: 676 QLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
            + A +K + +  + A ++PR ++ D   + QI +N+ +NA+ FT  G +III   +  +
Sbjct: 639 GIKAGQKGVEVVLAVAPDVPRTLIGDPLRLGQILINLANNAVKFTDKG-EIIIRVVNAPD 697

Query: 735 ----EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
                 +++ VRDTG+GMT+ ++      F Q   S   +  GTGLGL ++K + +   G
Sbjct: 698 IPTAGRLMVSVRDTGIGMTSEQVSNLFHSFNQADTSITRKYGGTGLGLAISKQLCEMMGG 757

Query: 791 KFYIFSTPAKGTLIEII 807
              + S P KG+     
Sbjct: 758 TVCVESEPGKGSTFIFT 774



 Score = 94.3 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 37/370 (10%), Positives = 95/370 (25%), Gaps = 20/370 (5%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS-DILHIDPNNHIGDLLKRQNTWYGKTT 148
           D     +  +    +  G  A  +IG  + D+  + L     ++I   L      + + T
Sbjct: 185 DKDLVCRFANTPYLEWFGKPADAIIGTLMPDLLGERLFAMNQSYIQGALA-GQPQHFERT 243

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           L   +G+  Y       +P      + +GF  F +V       +     +  + +   + 
Sbjct: 244 LTKADGSIGYTW--ANYVPDMDSYGKVAGF--FVLVTDVTPMKEAERQIRDAENRMRTIL 299

Query: 209 EIKKGHSSVEKEKYDIFSQQSPP------PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
                       K  + S               +  +   +     ++            
Sbjct: 300 NNVMDGIITIDGKGIVISVNPAAISLFGYSGEEVVGQNVKMLMPEPNRSSHDGYLARYQS 359

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
           T E  ++    +   +  +           +        ++      +        +   
Sbjct: 360 TGESRAIGVGRELEGLTKDGRVFPMELTITEVEIDGQRMFVGLVRDITERKSIASIQARY 419

Query: 323 PETVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
              ++         S   +    NP+   L  Y + + I       + L  P   D  A 
Sbjct: 420 MAIIEASSDAIMSKSLDGIVTSWNPAAEALFGYTAEEMIGTPM---SRLIPPGREDEEAQ 476

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
               + R     I         + N      ++       ++    M  + I  +  + +
Sbjct: 477 ILARIRR--GEYID-HFETFRQRKNG-QVFPISVTLSPIRDETGTLMGASKIARDITERK 532

Query: 442 INKRKMEIEV 451
             + +  +  
Sbjct: 533 QAEEETRLAR 542



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 17/138 (12%), Positives = 32/138 (23%), Gaps = 5/138 (3%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG-KTTLW 150
            G +   +       G  A +MIG  +  +      D    I   ++R       +T   
Sbjct: 436 DGIVTSWNPAAEALFGYTAEEMIGTPMSRLIPPGREDEEAQILARIRRGEYIDHFETFRQ 495

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
              G    + + L+  PI        G     I              +         +  
Sbjct: 496 RKNGQVFPISVTLS--PIRDETGTLMGASK--IARDITERKQAEEETRLARIAAEEANRT 551

Query: 211 KKGHSSVEKEKYDIFSQQ 228
           K    +    +       
Sbjct: 552 KSDFLANMSHEIRTPMNA 569



 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/247 (9%), Positives = 58/247 (23%), Gaps = 17/247 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G +  ++       G    +++G  +  +    +   ++      +          
Sbjct: 309 IDGKGIVISVNPAAISLFGYSGEEVVGQNVKMLMPEPNRSSHDGYLARYQSTGESRAIGV 368

Query: 149 LWPIEG---TNLYVPIDLAALPIYSRNREFSGFRGF-GIVHVNRVDNDPRALGKRLDKKF 204
              +EG        P++L    +     E  G R F G+V               +  ++
Sbjct: 369 GRELEGLTKDGRVFPMELTITEV-----EIDGQRMFVGLVRDITERK----SIASIQARY 419

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHL--RMKNKVSSLTEYYAHKDDVLKTEKY--P 260
             + E        +     + S       L      ++                E     
Sbjct: 420 MAIIEASSDAIMSKSLDGIVTSWNPAAEALFGYTAEEMIGTPMSRLIPPGREDEEAQILA 479

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
            +   E     +      N   +        +++ +             +     +E   
Sbjct: 480 RIRRGEYIDHFETFRQRKNGQVFPISVTLSPIRDETGTLMGASKIARDITERKQAEEETR 539

Query: 321 LTPETVD 327
           L     +
Sbjct: 540 LARIAAE 546


>gi|167622660|ref|YP_001672954.1| multi-sensor hybrid histidine kinase [Shewanella halifaxensis
            HAW-EB4]
 gi|167352682|gb|ABZ75295.1| multi-sensor hybrid histidine kinase [Shewanella halifaxensis
            HAW-EB4]
          Length = 1761

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 141/748 (18%), Positives = 264/748 (35%), Gaps = 50/748 (6%)

Query: 93   GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY----GKTT 148
            G L   +    +  G    +M+ M + ++        +  +      +        G+T 
Sbjct: 529  GQLVFTNSRCQQLFGYDKQQMLAMSVDELVPDGVRYRHAALRTQFIAEGRDRKMGKGQTL 588

Query: 149  L-WPIEGTNLYVPIDLAALPIYSR-NREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                 +G+   V I L  LP+     R+ +       V    V+ +     K  + +F  
Sbjct: 589  NARKSDGSEFPVEISLGLLPVTDDGKRQVA-----ATVRDMTVELEVAQRIKDSESRFRG 643

Query: 207  LH--------EIKKGHSSVEKEKYDIFSQQSPPPHLR-MKNKVSSLTEYYAHKDDVLKTE 257
            L           + G S V +   +  S  +  P    ++N   S       +D    T 
Sbjct: 644  LVTNIPGAVYRTRIGESWVMEYISNNISDITGFPASDFIENSSRSFASLIIEQDLEATTR 703

Query: 258  KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
                    + S   Q      + + +   +       +      +    N  + S    E
Sbjct: 704  TIEEALLAQKSFEIQYRIKHRDGSIHWVHEKGKASYGDEGGVLWFDGSINDITSSKLAQE 763

Query: 318  G----ENLTPETVDKCPIPFFVYS-----HGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
                 +       +  P   +             + + + +    +   + +        
Sbjct: 764  EIVQSQQQLETITESIPSTVYQLHWCSSGERTFTFLSSACITTLGFHRDEVM-----NDF 818

Query: 369  LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
             L A  +        +       +           +        +              +
Sbjct: 819  DLVAECIISEERSHIIEALSGQTSKGLQWTEEFRYRHPIGEIRWLQAGARGDLQADGCII 878

Query: 429  PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
              NG   +  D +   +++E       ++ +    GI  ++  G IL  N   S      
Sbjct: 879  -WNGYLMDITDRKQIDKELEDREAHFRALFDNAGIGIVNVDERGNILDCNEQFSFYMQTG 937

Query: 489  VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            V ++    F  F   +          ++        L        +  + + + I + KL
Sbjct: 938  VAELKSCSFFDFQHLDDREKAREVFADLTEGGSDNLLT-ELRLLNQSGECIWMDITLTKL 996

Query: 549  PFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
                       L+M +I+  KQ   +L  AK  A+  +  KSDFLA +SHEIRTP+ AII
Sbjct: 997  QDPQGKLTSVVLSMANITSLKQLSEELKQAKDSADAANQAKSDFLANMSHEIRTPMNAII 1056

Query: 605  GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
            G S++          N +   Y   IDR+   +L I+ND+LD SKIE+GK+++   P  L
Sbjct: 1057 GMSQLCLQTEL----NRKQQNYVLKIDRASKSLLGIINDILDFSKIEAGKLDIESVPFQL 1112

Query: 665  DEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG 723
            D  + +   +  + A +KR+ +  + A NIP ++  D   + Q+ +N++SNAI FT  G 
Sbjct: 1113 DTLLEDLSDMFSVKATDKRLELLFAVAPNIPRQLQGDPLRLSQVLINLMSNAIKFTEQG- 1171

Query: 724  QIIIST----THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
            ++++S         +  +   VRD G+G+T  + E+  K F Q   S   +  GTGLGL 
Sbjct: 1172 EVLLSISQLERIEDDIVLRFSVRDNGIGLTEEQRERLFKSFSQADTSTTRKYGGTGLGLA 1231

Query: 780  LAKAMVDANMGKFYIFSTPAKGTLIEII 807
            ++K +V+   G+  + S    G+     
Sbjct: 1232 ISKQLVELMGGEIGVESQFGNGSSFYFS 1259



 Score = 70.4 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/342 (10%), Positives = 84/342 (24%), Gaps = 25/342 (7%)

Query: 231 PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG 290
                + +   +L                 L    E        F      +  K     
Sbjct: 299 EFFRDIASLSLNLLLLSVLLLLTGYITARRLTRPIEELEAGIVAFGAGKTKRIEKPIGAM 358

Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF---VYSHGNLFYANPS 347
           +      + F  ++        A  D   N   + +D      F   V  +G +   +  
Sbjct: 359 SEIATLTDKFNDMAEVLEEREEALLDSRGNRFAKLIDGMSDKSFYCSVAPNGVIDQVSDG 418

Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
              +       ++          D P    N       L   +               + 
Sbjct: 419 VEKVLGVTP--ELLKRKYQRMFSDNPINELNWQYMDKALLGENVPPHQIEM------IDG 470

Query: 408 -ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
                 +        +   E +    +  +  +                ++LE+  + + 
Sbjct: 471 FGKLRRLDLFMQPLLSDNRELLSIEMLFNDVTEQFSAVAWS-------NAVLESAPEAML 523

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL- 525
           I+   G ++ TN    +LFGY  + +L       +            T+ ++    + + 
Sbjct: 524 IVEESGQLVFTNSRCQQLFGYDKQQMLAMSVDELVPDGVRYRHAALRTQFIAEGRDRKMG 583

Query: 526 -EKITLGSTKEEKLLSLRIIIKKLP----FSSCYSLTMHDIS 562
             +       +     + I +  LP         + T+ D++
Sbjct: 584 KGQTLNARKSDGSEFPVEISLGLLPVTDDGKRQVAATVRDMT 625


>gi|117926468|ref|YP_867085.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117610224|gb|ABK45679.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1075

 Score =  403 bits (1036), Expect = e-110,   Method: Composition-based stats.
 Identities = 122/736 (16%), Positives = 247/736 (33%), Gaps = 55/736 (7%)

Query: 112 KMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSR 171
           K++G  L D+     +   N    LL+R +      T     G         AA P +S 
Sbjct: 199 KVVGEPLMDLKRGYLLSTQNR--ALLQRIDPIIQHLTRSARYGEIYARWYGTAA-PFWSV 255

Query: 172 NREFS--------------GFRGFGIVHVNRV-------DNDPRALGKRLDKKFSHLHEI 210
            + F                +R F I   NR                +R +++F+     
Sbjct: 256 EQVFWIMSALLVAVLVVGGLYRVFAIARYNRELQRSIAAQQQAEQRLQRSEERFALAMRG 315

Query: 211 KKGHSSVEKEKYDIFSQQSPP-------PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
                       D  +               +  +        +      ++      L+
Sbjct: 316 SNDGLWDWDIPTDRVTFSPRWLEMLGYQGAPQDADMRHWQAHIHPDDQPRVEQALGRFLS 375

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL----SAYFDEGE 319
            ++     +      + +          L++ +  +   +      +     +    E E
Sbjct: 376 GDQQHYHSEYRMRHKDGHTIAVLSRAFVLRDATGRAIRMVGTHADITALKEQARRLRESE 435

Query: 320 NLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
                  ++  +   + S       AN +F  +  Y   + +++              D+
Sbjct: 436 TRFRAYFEQSVVGMVMASLDRHFIDANHAFCHMLGYSRGELLKMN------FPQITYPDD 489

Query: 379 NAIKPVML-YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
                V           A       +  +      +        ++  +           
Sbjct: 490 LERDLVQFEQLRSGQVSAFEMEKRYLHRDGHPVWGL-LSATTVKDELGQASYLIAQVQNI 548

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
              +    ++      +    E    G+A    +   +  N+ + ++ GYP   + +K +
Sbjct: 549 DTQKKALEQLRQSESMMRGYFELGLIGMATTTAQHGWVQINQRLCEILGYPEMALRQKSW 608

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---- 553
                          +  +    L +          ++   +   I    L         
Sbjct: 609 AEITHPQDRQADEVAIERLRK-GLSEGYALEKRFIRQDGAFIYASISAGCLRKEGGEIGH 667

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
           +   + DI+  K+ +  L   K+ AE  +  KS FLA +SHEIRTP+ AI+G +E+++  
Sbjct: 668 FLTLVQDITARKRMELALQEQKEQAEAANRAKSTFLAVMSHEIRTPMNAILGMAELLRES 727

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
                   R       ++RSG  +L ++ND+LD+SKIE+ ++ L      L + V +  S
Sbjct: 728 DLTS----RQHWCVETLNRSGESLLSLINDILDLSKIEAERLTLEHVVFDLVQLVGDVCS 783

Query: 674 LVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
           L    A  K + ++   A  +PR ++ D   ++QI +N++ NA+ FT  G  + +     
Sbjct: 784 LFGYEAQSKGLALKHHIAPTLPRYVVGDPIRLRQIMMNLVGNAVKFTKQG-HVSVELNPL 842

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
           ++  +   +RDTG+G++  +     KPF Q  +S      GTGLGL +   +V    G+ 
Sbjct: 843 ADGRLSFVIRDTGIGVSVEQQRNIFKPFTQADSSITREHGGTGLGLTICMRLVALMGGEM 902

Query: 793 YIFSTPAKGTLIEIIF 808
            + ST  +G+      
Sbjct: 903 QLESTLGEGSCFHFEL 918



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 19/246 (7%), Positives = 60/246 (24%), Gaps = 13/246 (5%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN--TWYGKTTLWPI 152
             + +      +G    +++ M    ++    ++ +    + L+      +  +      
Sbjct: 458 FIDANHAFCHMLGYSRGELLKMNFPQITYPDDLERDLVQFEQLRSGQVSAFEMEKRYLHR 517

Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212
           +G    V   L+A  +     + S       V             ++ +       E+  
Sbjct: 518 DGHP--VWGLLSATTVKDELGQASYL--IAQVQNIDTQKKALEQLRQSESMMRGYFELGL 573

Query: 213 GHSSVEKEKYDIFSQQS------PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
              +    ++               P + ++ K  +   +        +     L     
Sbjct: 574 IGMATTTAQHGWVQINQRLCEILGYPEMALRQKSWAEITH-PQDRQADEVAIERLRKGLS 632

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
                ++ F   +          G L+    E   +L+     +     +       E  
Sbjct: 633 EGYALEKRFIRQDGAFIYASISAGCLRKEGGEIGHFLTLVQDITARKRMELALQEQKEQA 692

Query: 327 DKCPIP 332
           +     
Sbjct: 693 EAANRA 698



 Score = 55.0 bits (131), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 12/140 (8%), Positives = 41/140 (29%), Gaps = 6/140 (4%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNT--WYGKTT 148
           A     +I++ L + +G     +      +++       +    + L++  +  +  +  
Sbjct: 581 AQHGWVQINQRLCEILGYPEMALRQKSWAEITHPQDRQADEVAIERLRKGLSEGYALEKR 640

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +G   ++   ++A  +     E   F    +V             +   ++    +
Sbjct: 641 FIRQDG--AFIYASISAGCLRKEGGEIGHF--LTLVQDITARKRMELALQEQKEQAEAAN 696

Query: 209 EIKKGHSSVEKEKYDIFSQQ 228
             K    +V   +       
Sbjct: 697 RAKSTFLAVMSHEIRTPMNA 716


>gi|127514128|ref|YP_001095325.1| multi-sensor hybrid histidine kinase [Shewanella loihica PV-4]
 gi|126639423|gb|ABO25066.1| PAS/PAC sensor hybrid histidine kinase [Shewanella loihica PV-4]
          Length = 1768

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 137/789 (17%), Positives = 272/789 (34%), Gaps = 54/789 (6%)

Query: 59   QESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRL 118
               V+      + +  V +  P  +      D  G +   +    +  G  A +M+ + +
Sbjct: 500  FNDVTEQFSAAAWSNAVLESAPEAMLIV---DEQGQVVFSNSRCQQLFGYDAQQMLALNV 556

Query: 119  CDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW-------PIEGTNLYVPIDLAALPIYSR 171
              +     +  +  +      +                   +G+   V I L  LP    
Sbjct: 557  DQLV-PDSVKHHEALRAKFIGEGVDRRMGLGLGKTLKAKKADGSLFPVEISLGLLPA-DS 614

Query: 172  NREFSGFRGFGI-VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP 230
            +    G R     +     +       K  + +F  L     G     +       +   
Sbjct: 615  D----GLRQVAASIRDMTEELATAKRIKDSESRFRGLVGNIPGAVYRTRLGEQWVMEYVS 670

Query: 231  PPHLRMKNKVSS---------LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLN 281
                 +    ++                 D            +E+ S   Q      + +
Sbjct: 671  DNIAEITGYPAADFIENKKRVFASLILEADREATDTAINKGIAEQQSFEVQYRIQHRDGS 730

Query: 282  QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE----GENLTPETVDKCPIPF---- 333
                 +      ++   +  +       + S    E     +       +  P       
Sbjct: 731  LRWVHEKGKASYDDEGNALWFDGSIQDVTQSKLAQEKIAQSQQQLETITESIPNTVYQLR 790

Query: 334  FVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
            ++ +      + + + +    +     +         L A  + ++   + +     +  
Sbjct: 791  WIANDQRYFTFLSRACITTLGFHRDQLLANFD-----LVADCIIESERARIIRALSGESA 845

Query: 393  CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
                       Q        +              +  NG   +  + +   R++     
Sbjct: 846  SGLKWIEEFRYQHPTGEQRWLQAGARGDRQDDGSIV-WNGYLMDISERKQMDRELAKREA 904

Query: 453  QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
               ++ +    GI  ++  G+IL  N   S+    P+E +    F  + +        + 
Sbjct: 905  HFRALFDNAGIGIVNVDDRGVILDCNEQFSQYLQLPIERLKGSLFFDYQDPEQGLEAKNS 964

Query: 513  LTEILSLDLRQT-LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH--DISEWKQEKN 569
               ++        LE   L    E + + + +           S  +   DIS  K    
Sbjct: 965  FKHLMGDGADSVKLEIRLLNQAGEARWMDVNMTGLSDKQGEYRSAVLSMADISSLKLLSE 1024

Query: 570  KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
            +L+ AK +A+  S  KSDFLA +SHEIRTP+ AIIG S++          + +   Y   
Sbjct: 1025 ELTQAKDVADAASKAKSDFLANMSHEIRTPMNAIIGMSQLCLQTSL----DKKQQNYVEK 1080

Query: 630  IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
            IDR+   +L I+ND+LD SKIE+GK+++   P  LD  + +   +  + A +K++ +  +
Sbjct: 1081 IDRASKSLLGIINDILDFSKIEAGKLDIEAVPFQLDTMLEDLSDMFSVKAADKQLELLFA 1140

Query: 690  FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVI--LRVRDTG 745
             A NIPR ++ D   + Q+ +N+++NAI FT  G   + IS     +EE++    VRD G
Sbjct: 1141 VAPNIPRHLVGDPLRLSQVLINLMNNAIKFTEQGEVMLSISQLVREDEEILLKFSVRDNG 1200

Query: 746  VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL-- 803
            +G+T  +  K  + F Q  +S   +  GTGLGL + K +V+   G+  + S    G+   
Sbjct: 1201 IGLTEEQRGKLFQSFSQADSSTTRKYGGTGLGLAICKQLVELMGGEIGVESQFGNGSTFF 1260

Query: 804  IEIIFPLYD 812
              + F + D
Sbjct: 1261 FSVRFKVAD 1269



 Score = 97.4 bits (241), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 64/512 (12%), Positives = 154/512 (30%), Gaps = 23/512 (4%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD-LLKRQNTW 143
           F  +++  G + ++S  + K +G     +        SD    + N    D  L+  +  
Sbjct: 404 FYCSLEPDGQIAQVSAGVEKVLGVSPDLLKRKYQRMFSDNPINEANWEYMDSALQGNSVP 463

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRG-FGIVHVNRVDNDPRALGKRLDK 202
             +  +    G+   + + +   P+ S N E       F  V                  
Sbjct: 464 PHQVEMIAANGSVRRLDLFM--QPLLSDNGELLSIEMLFNDVTEQFSAAAWSNAVLESAP 521

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
           +   + + +            +F   +        +++   +  + H+    K     + 
Sbjct: 522 EAMLIVDEQGQVVFSNSRCQQLFGYDAQQMLALNVDQLVPDSVKH-HEALRAKFIGEGVD 580

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG---- 318
                 L +       + + +  +   G L  +S    +  +     +      +     
Sbjct: 581 RRMGLGLGKTLKAKKADGSLFPVEISLGLLPADSDGLRQVAASIRDMTEELATAKRIKDS 640

Query: 319 ENLTPETVDKCPIPFFVYSHGN---LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
           E+     V   P   +    G    + Y + +   +T Y + D IE    +   L   + 
Sbjct: 641 ESRFRGLVGNIPGAVYRTRLGEQWVMEYVSDNIAEITGYPAADFIENKKRVFASLI-LEA 699

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
                   +    +++       R   IQ    +   +        +     +  +G   
Sbjct: 700 DREATDTAINKGIAEQQSFEVQYR---IQHRDGSLRWVHEKGKASYDDEGNALWFDGSIQ 756

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGI----AIINREGIILSTNRAVSKLFGYPVED 491
           +   +++ + K+     QL +I E+  + +     I N +      +RA     G+  + 
Sbjct: 757 DVTQSKLAQEKIAQSQQQLETITESIPNTVYQLRWIANDQRYFTFLSRACITTLGFHRDQ 816

Query: 492 ILRKP--FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
           +L         + ++  + +   L+   +  L+   E      T E++ L       +  
Sbjct: 817 LLANFDLVADCIIESERARIIRALSGESASGLKWIEEFRYQHPTGEQRWLQAGARGDRQD 876

Query: 550 FSSCYS-LTMHDISEWKQEKNKLSHAKKIAEK 580
             S      + DISE KQ   +L+  +     
Sbjct: 877 DGSIVWNGYLMDISERKQMDRELAKREAHFRA 908



 Score = 45.4 bits (106), Expect = 0.039,   Method: Composition-based stats.
 Identities = 17/153 (11%), Positives = 50/153 (32%), Gaps = 8/153 (5%)

Query: 441 RINKRKMEIEVMQLCSILEATSD--GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
           +  +  ++    +   +++  SD      +  +G I   +  V K+ G   + + RK   
Sbjct: 379 QREQALLDSRGNRFAKLIDGMSDKSFYCSLEPDGQIAQVSAGVEKVLGVSPDLLKRKYQR 438

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS--- 555
           +F +         Y+   L  +     +   +       +  L + ++ L   +      
Sbjct: 439 MFSDNPINEANWEYMDSALQGNSVPPHQVEMIA--ANGSVRRLDLFMQPLLSDNGELLSI 496

Query: 556 -LTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
            +  +D++E        +   + A +      +
Sbjct: 497 EMLFNDVTEQFSAAAWSNAVLESAPEAMLIVDE 529


>gi|268316575|ref|YP_003290294.1| multi-sensor signal transduction histidine kinase [Rhodothermus
            marinus DSM 4252]
 gi|262334109|gb|ACY47906.1| multi-sensor signal transduction histidine kinase [Rhodothermus
            marinus DSM 4252]
          Length = 1029

 Score =  402 bits (1034), Expect = e-110,   Method: Composition-based stats.
 Identities = 138/764 (18%), Positives = 259/764 (33%), Gaps = 56/764 (7%)

Query: 87   WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK 146
            +     G +  ++  L + +G      +  R   +  +   D    +  L +       +
Sbjct: 272  YRTTVDGRILRVNPALARMLGYDDPSELEGRPTSILYVEEADRARFLETLRREGRLVNYE 331

Query: 147  TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
              L   +G  L+   ++  +          G        +  V        + L   ++H
Sbjct: 332  VRLRRKDGRVLWGLENVLLVQEPDGTECIEG-------TLIDVTELLEQRRRYL-GLYAH 383

Query: 207  LHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
              +        +  ++ + +          L  +   +         D V          
Sbjct: 384  TEDAIFWIRVTDDGRFLVEATNPSHQRKTGLTPEMLWNRPLNKILPPDIVAHVTGNYRRC 443

Query: 264  SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE---- 319
             E     E E+   +   + T       + +               +             
Sbjct: 444  LEAGHPIEYEETLDLPAGRRTWLTQLVPIPDPDGRIRLIAGIARDITELRRLQALLEEEG 503

Query: 320  --------------------NLTPETVDKCPIPFFVYSHGNLFYANPSFL---------- 349
                                 +    ++      ++Y  G L       L          
Sbjct: 504  LFLEQLVSGASRKTLCERLCRVAERFIEGARASVWMYDEGRLHLCAAPELPESFRALFDG 563

Query: 350  LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
             L         E A     +  +    D           +       +          E 
Sbjct: 564  QLIGSNQGSLGEAAFSRRPVWVSDIKHDPRWGAFREQALAQGLRACWAVPFFG--RKGEL 621

Query: 410  SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469
               +     +  +  P+               + K ++  E  +L  ++   ++G+AI +
Sbjct: 622  LGVLGLCFDQVRSPLPDEQAVVARLAHLAGVGMAKVRLREERERLARVVAQITEGVAITD 681

Query: 470  REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
              G ++  N A + L GY  +++L K     L              +  L  R    ++ 
Sbjct: 682  TMGNVVWVNEAFTCLTGYRADEVLGKNIEHLLHGPETDRDTLRRMRLRLLRGRPAHARLY 741

Query: 530  LGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
                K+       + I +L         Y   M D++E  + + +L  AK+ AE+ S  K
Sbjct: 742  HYR-KDGSGFWDEVHIDRLYDEQGQHIGYIGLMADVTELVEAERQLKAAKERAEEASRLK 800

Query: 586  SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
            S FLA +SHEIRTPLT I+GF+E + ++           E+ + IDRS   +L ++ND+L
Sbjct: 801  SAFLANMSHEIRTPLTGILGFAE-LLDEELETRQQEDLREFTHIIDRSARRLLTLLNDIL 859

Query: 646  DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
            D+SKIE+ ++ L  +P  + +   +A+ L+Q  A EK + +      N+    AD   + 
Sbjct: 860  DLSKIEANRLELKLQPTDVVDVARQAVQLMQPLAEEKGLKLELHAEENL-TARADPNRLH 918

Query: 706  QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
            Q+ +N+LSNAI FT  G  + +         V+L V DTG G++   L    +PF Q   
Sbjct: 919  QVLVNLLSNAIKFTDEG-HVRVELG-QKKGWVLLAVEDTGCGISPEFLPHLFEPFRQEHE 976

Query: 766  SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
                + +G GLGL + K ++D   G+  + S   +GT  EI+ P
Sbjct: 977  GLTQKHQGVGLGLAIVKRLIDLMSGQITVQSEVGRGTRFEILLP 1020



 Score =  130 bits (328), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 48/496 (9%), Positives = 130/496 (26%), Gaps = 44/496 (8%)

Query: 90  DAH-GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN-HIGDLLKRQNTWYGKT 147
           DA  G + E +    +  G     +  M   ++                ++         
Sbjct: 30  DAETGQILEANPAAERLFGYDRATLCRMHQEELHPAELAASYRKKFRRAVEAGTFRERGL 89

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
            +   +G+  ++P++L+   +    R+       G+    R            +  +  L
Sbjct: 90  IVQHADGS--WIPVELSGQVLEVGGRKLI----QGVFRDLRE----LQRLTETEALYRTL 139

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA----HKDDVLKTEKYPLLT 263
            E       + ++   +              +        +       ++        L 
Sbjct: 140 FETSLAGIYLLQDGRVVVVNPQAAAMFGYTPEEIVGRPVLSIVAEEDRELAAENIRRRLA 199

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTL--QNNSKESFEYLSHRNHPSLSAYFDEGENL 321
            E   +  +      + +++  +     +            L             + E  
Sbjct: 200 GEVEEIRYRFRGLRKDGSRFWAEVRGRRIVYNGRPAILGTVLDIDEQVRAIEKLKQSEAR 259

Query: 322 TPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
                +     F+  +  G +   NP+   +  Y    ++E     S L       + + 
Sbjct: 260 YRRLFEHSVAGFYRTTVDGRILRVNPALARMLGYDDPSELEGRP-TSILYVE----EADR 314

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
            + +   R +   +    RL   + +      +  +   +     E     G   +    
Sbjct: 315 ARFLETLRREGRLVNYEVRLR--RKDGRVLWGLENVLLVQEPDGTE--CIEGTLIDVT-- 368

Query: 441 RINKRKMEIEVMQLCSILEATSDGI--AIINREGI--ILSTNRAVSKLFGYPVEDILRKP 496
                ++  +  +   +   T D I    +  +G   + +TN +  +  G   E +  +P
Sbjct: 369 -----ELLEQRRRYLGLYAHTEDAIFWIRVTDDGRFLVEATNPSHQRKTGLTPEMLWNRP 423

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR-IIIKKLPFSSCYS 555
               L  +  + +       L       +E          +   L  ++    P      
Sbjct: 424 LNKILPPDIVAHVTGNYRRCLEAG--HPIEYEETLDLPAGRRTWLTQLVPIPDPDGRIRL 481

Query: 556 --LTMHDISEWKQEKN 569
                 DI+E ++ + 
Sbjct: 482 IAGIARDITELRRLQA 497



 Score =  127 bits (320), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 39/386 (10%), Positives = 105/386 (27%), Gaps = 19/386 (4%)

Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS---SLTEYYAH 249
             A G + +  +  L E  +    +   +     + +P          +    + +   H
Sbjct: 4   REAPGLKQEALYRALFETTQDAVLIADAETGQILEANPAAERLFGYDRATLCRMHQEELH 63

Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
             ++  + +     + E+    +      + +                            
Sbjct: 64  PAELAASYRKKFRRAVEAGTFRERGLIVQHADGSWIPVELSGQVLEVGGRKLIQGVFRDL 123

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
                  E E L     +      ++   G +   NP    +  Y   + +        +
Sbjct: 124 RELQRLTETEALYRTLFETSLAGIYLLQDGRVVVVNPQAAAMFGYTPEEIVGRP-----V 178

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
           L      D       +  R          R   ++ +     A         N  P    
Sbjct: 179 LSIVAEEDRELAAENIRRRLAGEVEEIRYRFRGLRKDGSRFWAEVRGRRIVYNGRP---A 235

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-P 488
             G   +  +      K++    +   + E +  G      +G IL  N A++++ GY  
Sbjct: 236 ILGTVLDIDEQVRAIEKLKQSEARYRRLFEHSVAGFYRTTVDGRILRVNPALARMLGYDD 295

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
             ++  +P ++   +        +L  +      + +        K+ ++L     +  +
Sbjct: 296 PSELEGRPTSILYVEEADRA--RFLETLRREG--RLVNYEVRLRRKDGRVLWGLENVLLV 351

Query: 549 PFSSC---YSLTMHDISEWKQEKNKL 571
                      T+ D++E  +++ + 
Sbjct: 352 QEPDGTECIEGTLIDVTELLEQRRRY 377



 Score =  105 bits (261), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 50/411 (12%), Positives = 128/411 (31%), Gaps = 42/411 (10%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
               A   + E L     +       +     G +  ANP+   L  Y           L
Sbjct: 2   EVREAPGLKQEALYRALFETTQDAVLIADAETGQILEANPAAERLFGYDRA-------TL 54

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
             +          A      +R          R   +Q    + + +            +
Sbjct: 55  CRMHQEELHPAELAASYRKKFRRAVEAGTFRERGLIVQHADGSWIPVELSGQVLEVGGRK 114

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
            +                +++        ++ E +  GI ++ ++G ++  N   + +FG
Sbjct: 115 LIQG------VFRDLRELQRLTETEALYRTLFETSLAGIYLL-QDGRVVVVNPQAAAMFG 167

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
           Y  E+I+ +P    + +    +    +   L+ ++ +   +   G  K+       +  +
Sbjct: 168 YTPEEIVGRPVLSIVAEEDRELAAENIRRRLAGEVEEIRYR-FRGLRKDGSRFWAEVRGR 226

Query: 547 KL--PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE---IR-TP- 599
           ++          T+ DI E  +   KL  ++    +   H      R + +   +R  P 
Sbjct: 227 RIVYNGRPAILGTVLDIDEQVRAIEKLKQSEARYRRLFEHSVAGFYRTTVDGRILRVNPA 286

Query: 600 LTAIIGFSEVIKNQRFGP----LGNPRYIEYANYIDRSGN-------------LVLDIVN 642
           L  ++G+ +  + +        +       +   + R G               VL  + 
Sbjct: 287 LARMLGYDDPSELEGRPTSILYVEEADRARFLETLRREGRLVNYEVRLRRKDGRVLWGLE 346

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693
           ++L + + + G   +    + + E + +    + LYA+ +  +      ++
Sbjct: 347 NVLLVQEPD-GTECIEGTLIDVTELLEQRRRYLGLYAHTEDAIFWIRVTDD 396



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 56/544 (10%), Positives = 125/544 (22%), Gaps = 62/544 (11%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID-PNNHIGDLLKRQNTWYGKTTL- 149
            G +  ++ +     G    +++G  +  +      +    +I   L  +          
Sbjct: 152 DGRVVVVNPQAAAMFGYTPEEIVGRPVLSIVAEEDRELAAENIRRRLAGEVEEIRYRFRG 211

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGF-GIVHVNRVDNDPRALGKRLDKKFSHLH 208
              +G+  +  +         R   ++G     G V             K+ + ++  L 
Sbjct: 212 LRKDGSRFWAEV-------RGRRIVYNGRPAILGTVLDIDEQVRAIEKLKQSEARYRRLF 264

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPP---HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
           E              I                +++        + ++  +      L  E
Sbjct: 265 EHSVAGFYRTTVDGRILRVNPALARMLGYDDPSELEGRPTSILYVEEADRARFLETLRRE 324

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
              +  +      +       +    +Q          +  +   L         L   T
Sbjct: 325 GRLVNYEVRLRRKDGRVLWGLENVLLVQEPDGTECIEGTLIDVTELLEQRRRYLGLYAHT 384

Query: 326 VDKCPIPFFVYSHGNLFY--ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
            D       V   G       NPS    T              +  L+     D  A   
Sbjct: 385 EDAIFW-IRVTDDGRFLVEATNPSHQRKTGLTPEML------WNRPLNKILPPDIVAHVT 437

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
               R                     +     +P    +         GI  +  + R  
Sbjct: 438 GNYRRCLEAGHPIEYEETLDLPAGRRTWLTQLVPIPDPD--GRIRLIAGIARDITELRRL 495

Query: 444 KRKMEIEV----------------MQL----CSILEATSDGIAIINREGIILST-----N 478
           +  +E E                  +L       +E     + + + EG +         
Sbjct: 496 QALLEEEGLFLEQLVSGASRKTLCERLCRVAERFIEGARASVWMYD-EGRLHLCAAPELP 554

Query: 479 RAVSKLF---------GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
            +   LF         G   E    +      +         +  + L+  LR       
Sbjct: 555 ESFRALFDGQLIGSNQGSLGEAAFSRRPVWVSDIKHDPRWGAFREQALAQGLRACWAVPF 614

Query: 530 LGSTKE--EKLLSLRIII-KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
            G   E    L      +   LP        +  ++     K +L   ++   +  +  +
Sbjct: 615 FGRKGELLGVLGLCFDQVRSPLPDEQAVVARLAHLAGVGMAKVRLREERERLARVVAQIT 674

Query: 587 DFLA 590
           + +A
Sbjct: 675 EGVA 678


>gi|312892347|ref|ZP_07751842.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM
           18603]
 gi|311295131|gb|EFQ72305.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM
           18603]
          Length = 1043

 Score =  402 bits (1033), Expect = e-109,   Method: Composition-based stats.
 Identities = 125/738 (16%), Positives = 264/738 (35%), Gaps = 49/738 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ-----NTW 143
           +D    ++ I++ + + +G    + IG     +      D    +  +++        T+
Sbjct: 193 MDKSANIELINDSVTRVLGYTPQESIGKP---IWFFFEEDDRTRLSKVVEEGLRNKKKTF 249

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +T +    G   ++   + A           G   +     N       A    L+  
Sbjct: 250 ELETRIVARNGDIKWISWSVIAK----------GQSWYASGRDNTYQKKILA---DLELL 296

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA----HKDDVLKTEKY 259
                ++  G      +   I++  +                          DV    + 
Sbjct: 297 SLVASKVSNGVVISNADGGIIWTNNAFTDITGFTYDDVKGRALSGSLTGESTDVATINEM 356

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
             LT    S  +    +  + +          + ++     +Y+      +     +   
Sbjct: 357 RNLTENRRSFEKDLQIYRKDGSTLWVSFNNSIIFDDCGNVDKYVEVLVDITKRKNAELDR 416

Query: 320 NLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
            +      K P    +    G + + N +   +  Y   +      G  TLL        
Sbjct: 417 EILSFAAQKSPSGILIRDGRGEVIWMNEALEHILGYALSEMRGKVFG--TLLVGEDTDLA 474

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
                V   ++          +   + +R     +        ++    + Q  +  +  
Sbjct: 475 VFQDAV---KATSERRPYEIEIKIYKKDRTPIWVL-LSNNPMIDEEGNVVRQTSVVIDIT 530

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
             +  + ++      L  +  +T+ G+ I +++G +   N A  K+ GY +  + ++   
Sbjct: 531 KRKEAEEEL----TTLSLVASSTTSGVVINDKDGCVEWVNDAFEKITGYNLTSVYQRHIG 586

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----Y 554
             L+     V        LS + +   E   L    + + + + +I   +  S+     Y
Sbjct: 587 DVLKGELTDVALIEKARELSRNKQS-FELDLLIYRSDGQPIWVSVINSVIFDSNGGVSKY 645

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
              + DI+  K  + +L  AK+ A + ++ K  F++ +SHEIRTPL A+IG S ++    
Sbjct: 646 VEVLIDITAKKNAEQQLIDAKEEALQLNTAKDMFISVMSHEIRTPLNAVIGISNLLIEDN 705

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                +    E    +  S + ++ ++ND+LD +K+E+G + L    +++ E V   ++ 
Sbjct: 706 ----PSHSQQENLKILKFSADNLMTLINDVLDFTKVETGNVELEKTNLNIRELVDSVVNS 761

Query: 675 VQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHT 732
           +Q  A  K I IRT     +P  IL D   + QI LN++ N++ FT  GG  I +     
Sbjct: 762 LQYKAEAKHIYIRTDIDEQLPLDILGDKTRICQILLNLVGNSVKFTEKGGVTIDLKLIEQ 821

Query: 733 SNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
           +  +V +R  V DTG+G+   +L    + F Q          GTGLGL + K +++ +  
Sbjct: 822 TAGQVRIRFEVSDTGIGIPPDKLNTVFESFKQAQTDTTRLYGGTGLGLAITKRLIELHDS 881

Query: 791 KFYIFSTPAKGTLIEIIF 808
           +  + S     +      
Sbjct: 882 RINVESVYGHSSKFWFTI 899



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/151 (11%), Positives = 51/151 (33%), Gaps = 3/151 (1%)

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
            +                  +    +      +  ++   + +   I+++   I   N +
Sbjct: 146 RDALQTLARGVISHLTLRKQKNELEERLKLHTEFFNLFNNSPEIHCIMDKSANIELINDS 205

Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
           V+++ GY  ++ + KP   F E++  + ++  + E L     +T E  T    +   +  
Sbjct: 206 VTRVLGYTPQESIGKPIWFFFEEDDRTRLSKVVEEGLRNKK-KTFELETRIVARNGDIKW 264

Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571
           +   +        +  +  D +  K+    L
Sbjct: 265 ISWSVIA--KGQSWYASGRDNTYQKKILADL 293


>gi|148263292|ref|YP_001229998.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter
           uraniireducens Rf4]
 gi|146396792|gb|ABQ25425.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter
           uraniireducens Rf4]
          Length = 637

 Score =  402 bits (1033), Expect = e-109,   Method: Composition-based stats.
 Identities = 107/645 (16%), Positives = 247/645 (38%), Gaps = 49/645 (7%)

Query: 184 VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL------RMK 237
           +   R     +            + +      SV K    +    S    +         
Sbjct: 25  LRKMRAKERKQMEEAESYALLRVMFDQSSSLISVLKPDGTVLDINSSAFDVIGGTKSEAI 84

Query: 238 NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFH-TINLNQYTKKQYFGTLQNNS 296
            K    T  + H  ++ +  +  + ++ +      E  H T +            ++++ 
Sbjct: 85  GKPFWETLAWVHSPELQERLRQAIKSAAQGEFVSFEATHPTADGKLIYVDFSLKPVKDDD 144

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP-----FFVYSHGNLFYANPSFLLL 351
                 L      +     +E                    F++       Y +PS   +
Sbjct: 145 GNVVLLLPEGRDITKRREAEEALREVAVKYRIVADNTYNWEFWLSPADRFIYTSPSCRRI 204

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSD-NNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
           + + + +     G L +++         +    +   ++          L  ++ + +  
Sbjct: 205 SGHGAEEFNADPGLLRSIIHPDDRHLWTDHRHDITQTKALG-----ELELRIVRPDGD-I 258

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470
             +  +     +    ++   G   +  + +      E + ++L  ++E++ D I     
Sbjct: 259 RWVHHVCIPVFDDNGNHLGTRGSFSDITERKQA----EEKNLRLAVMVESSDDAIVGKTL 314

Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530
           +GII S NR   K+FGY  +++L KP T+ +       +      +   +        T+
Sbjct: 315 DGIITSWNRGAEKIFGYSEDEVLGKPITMLIPAENVDEVLQMDERLRHGE--HIEHFETV 372

Query: 531 GSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
              K+ +L+ + +    +  +    +       DI+E K+ +                K 
Sbjct: 373 RRRKDGQLIHMSLSYSPIRDAQGRVVAVSTIGRDITERKEME--------------QMKD 418

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
           + ++ VSHE+RTPLTA++G++E + +         +  EY          + +++ + LD
Sbjct: 419 EMISAVSHEMRTPLTAMLGYTEFMLDNEVPA---DQQREYLRITLHESEKLNELIGNFLD 475

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706
           + ++ S K  + + P+ L   + E ++L    +    I +     +++PRI  D + ++Q
Sbjct: 476 LQRLRSRKETVTWRPLPLQPLLEETVALFTRVSERHHITL--DCPSDLPRICGDNKQLRQ 533

Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
           +  N++SNA+ ++P GG + +       + V++ VRD G+G++   +E+  + F ++ N+
Sbjct: 534 VFNNLVSNAVKYSPKGGAVRV-AARREKDCVVITVRDEGIGISPQAVERIFERFYRVNNT 592

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
                 GTGLGL L + +V A+ G+ ++ ST  KG+   +  P+ 
Sbjct: 593 ACRVFGGTGLGLALVREIVTAHGGEVWVESTLGKGSTFFVSLPVA 637



 Score = 96.6 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/366 (9%), Positives = 89/366 (24%), Gaps = 22/366 (6%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCD-VSDILHIDPNNHIGDLLKR---QNTWYGK 146
             G + +I+      IG    + IG    + ++ +   +    +   +K          +
Sbjct: 61  PDGTVLDINSSAFDVIGGTKSEAIGKPFWETLAWVHSPELQERLRQAIKSAAQGEFVSFE 120

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
            T    +G  +Y  +D +  P+   +         G         +     + +  K+  
Sbjct: 121 ATHPTADGKLIY--VDFSLKPVKDDDGNVVLLLPEG--RDITKRREAEEALREVAVKYRI 176

Query: 207 LHEIKKGHSSVEKEKYDIFSQQS-----PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
           + +                                 N    L     H DD      +  
Sbjct: 177 VADNTYNWEFWLSPADRFIYTSPSCRRISGHGAEEFNADPGLLRSIIHPDDRHLWTDHRH 236

Query: 262 LTSEESSLPEQE-DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
             ++  +L E E      + +          + +++          +  +     +E   
Sbjct: 237 DITQTKALGELELRIVRPDGDIRWVHHVCIPVFDDNGNHLGTRGSFSDITERKQAEEKNL 296

Query: 321 LTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
                V+            G +   N     +  Y   + +       T+L   +  D  
Sbjct: 297 RLAVMVESSDDAIVGKTLDGIITSWNRGAEKIFGYSEDEVLGKPI---TMLIPAENVDEV 353

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
                 L   +             +      + M+       +     +  + I  +  +
Sbjct: 354 LQMDERLRHGE----HIEHFETVRRRKDGQLIHMSLSYSPIRDAQGRVVAVSTIGRDITE 409

Query: 440 TRINKR 445
            +  ++
Sbjct: 410 RKEMEQ 415



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 23/226 (10%), Positives = 60/226 (26%), Gaps = 21/226 (9%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG-KTTLW 150
            G +   +    K  G    +++G  +  +    ++D    + + L+        +T   
Sbjct: 315 DGIITSWNRGAEKIFGYSEDEVLGKPITMLIPAENVDEVLQMDERLRHGEHIEHFETVRR 374

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
             +G  +++   L+  PI             G         +   +      +       
Sbjct: 375 RKDGQLIHMS--LSYSPIRDAQGRVVAVSTIG--RDITERKEMEQM----KDEMISAVSH 426

Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270
           +          Y  F   +  P  + +  +             +   +   L     +  
Sbjct: 427 EMRTPLTAMLGYTEFMLDNEVPADQQREYL------------RITLHESEKLNELIGNFL 474

Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
           + +   +       +      L   +   F  +S R+H +L    D
Sbjct: 475 DLQRLRSRKETVTWRPLPLQPLLEETVALFTRVSERHHITLDCPSD 520



 Score = 46.9 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 22/247 (8%), Positives = 58/247 (23%), Gaps = 15/247 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFK--MIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYG 145
           +         S    +  G+ A +       L  +          +H  D+ + +     
Sbjct: 188 LSPADRFIYTSPSCRRISGHGAEEFNADPGLLRSIIHPDDRHLWTDHRHDITQTKALGEL 247

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +  +   +G   +V      +P++  N    G RG                  RL     
Sbjct: 248 ELRIVRPDGDIRWVHHV--CIPVFDDNGNHLGTRG--SFSDITERKQAEEKNLRLA---- 299

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHL--RMKNKVSSLTEYYAHKDDVLKTEKY--PL 261
            + E        +     I S       +    +++V           + +         
Sbjct: 300 VMVESSDDAIVGKTLDGIITSWNRGAEKIFGYSEDEVLGKPITMLIPAENVDEVLQMDER 359

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
           L   E     +      +         +  +++         +     +     ++ ++ 
Sbjct: 360 LRHGEHIEHFETVRRRKDGQLIHMSLSYSPIRDAQGRVVAVSTIGRDITERKEMEQMKDE 419

Query: 322 TPETVDK 328
               V  
Sbjct: 420 MISAVSH 426


>gi|219847764|ref|YP_002462197.1| PAS/PAC sensor hybrid histidine kinase [Chloroflexus aggregans DSM
           9485]
 gi|219542023|gb|ACL23761.1| PAS/PAC sensor hybrid histidine kinase [Chloroflexus aggregans DSM
           9485]
          Length = 1207

 Score =  402 bits (1032), Expect = e-109,   Method: Composition-based stats.
 Identities = 114/740 (15%), Positives = 254/740 (34%), Gaps = 42/740 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTWYGK 146
            D  G ++ ++E   +  G    ++ G +L D+      D      I   ++   +   +
Sbjct: 223 TDRTGRIEWVNEGFTRISGYTLDEVRGEKLGDLLQGPETDQETVAAISRAIRNGESIKTE 282

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL--DKKF 204
              +   G   ++ +D++  P+Y      + F    I        +   + +    + + 
Sbjct: 283 ILNYTKNGHPYWLSLDIS--PVYDEQHHLTHF--IAIESDITHQKEMERMLRSALKESRD 338

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEKYPLL 262
                 +    S+   +  I         +     +++                    L 
Sbjct: 339 IMNALDQSTILSIADPEGRILEVNERFCAITGYRPDELIGKDHRIFKSGVHTPEFFADLW 398

Query: 263 TSEESSLPEQEDF--HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
            + ++    + +      + + +           ++ +   YL+ R   +     +E   
Sbjct: 399 NTIKAGRIWRNEICNRAKDGHLFWVDTTIVPFIGDNGQPERYLAVRFDITGRKKSEEQLR 458

Query: 321 ----LTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
                    +        V    G +   N S   +        +   G         + 
Sbjct: 459 ASETRYRSVITAMSEGIVVMNKSGVIETCNTSAERILGLSYDQLVGRTGFDPRWEAIHED 518

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
                 +   +  S  T    S  +  I+      + ++       ++            
Sbjct: 519 GTPFPGEEHPIMVSLTTGRPQSDVVMGIRKPSGELIWISINSQPLCDEHGNVYAAVASFH 578

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
           +    R  ++++  +   L    EA+ DG+ +++ +   L  N+   +++      I + 
Sbjct: 579 DITARRNAEQELRFQKTLLECQTEASPDGVLVVSPDRRCLYANQRFREMWKITGSPIEQA 638

Query: 496 PFT-----VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
                   +  +   P  + + + E+ +      L   T    K+ +             
Sbjct: 639 TCAASMELMLAQVCDPERVRNEIEELYANPN---LTGKTEIELKDGRTFERYSAPVISSE 695

Query: 551 SS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                      D++E +  +                K++F+A VSHE+RTPLT+I G   
Sbjct: 696 GDYYGRVWFFRDVTERRAIE--------------RMKNEFVAVVSHELRTPLTSIRGSLG 741

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
           +I     G L  PR     +   ++   ++ ++ND+LDI KIESGKM    +PV LDE V
Sbjct: 742 LIAGGVAGELP-PRAAAMIDIALKNSERLVRLINDILDIEKIESGKMVFKMQPVVLDELV 800

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
            + I   + +  +  + I  +      ++  D   + Q+  N++SNA+ F+P G ++ ++
Sbjct: 801 RQTIEANRGFGQQYNVQIELTATLPGVQVYVDPDRMTQVITNLISNAVKFSPPGCKVEVA 860

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                   V + V D G G+     ++  + F Q  +S   +  GTGLGL +++A+V+ +
Sbjct: 861 IGREPQGRVRITVTDHGPGIPPEFRDRIFQKFAQADSSNTRQQGGTGLGLSISRAIVERH 920

Query: 789 MGKFYIFSTPAKGTLIEIIF 808
            G+    +    GT   +  
Sbjct: 921 GGQIGFVTATGVGTTFYVDL 940



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/301 (11%), Positives = 90/301 (29%), Gaps = 23/301 (7%)

Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLL 351
               +  +    +      L    DE        +   P     ++   L          
Sbjct: 63  ANELALFADASQAASLRAELHVLRDELWQTHQRLLADIPADVLDHTTTTLERF------- 115

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411
                VD++  A     LL+            +++ +SD +  ++   + +     + +L
Sbjct: 116 --LTYVDNLVAAP--PALLNRDNTDLRAIQTNLIVVQSDLSATSSILLMQSQALRGQITL 171

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471
               +     +     +            R  ++     +  L  +   T + + I +R 
Sbjct: 172 IQAGVVVLILSLLIAGVFLIIRPYARRARREAEQ-----LRMLSLVARYTDNAVIITDRT 226

Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLE-QNTPSVMNHYLTEILSLDLRQTLEKITL 530
           G I   N   +++ GY ++++  +     L+   T       ++  +     ++++   L
Sbjct: 227 GRIEWVNEGFTRISGYTLDEVRGEKLGDLLQGPETDQETVAAISRAIRNG--ESIKTEIL 284

Query: 531 GSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
             TK      L + I  +         +     DI+  K+ +  L  A K +    +   
Sbjct: 285 NYTKNGHPYWLSLDISPVYDEQHHLTHFIAIESDITHQKEMERMLRSALKESRDIMNALD 344

Query: 587 D 587
            
Sbjct: 345 Q 345


>gi|126658537|ref|ZP_01729684.1| serine/threonine kinase with two-component sensor domain [Cyanothece
            sp. CCY0110]
 gi|126620124|gb|EAZ90846.1| serine/threonine kinase with two-component sensor domain [Cyanothece
            sp. CCY0110]
          Length = 3557

 Score =  402 bits (1032), Expect = e-109,   Method: Composition-based stats.
 Identities = 126/765 (16%), Positives = 271/765 (35%), Gaps = 73/765 (9%)

Query: 96   KEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK--------T 147
             E  + L +  G      +G    ++ + + +   +    ++   N    +         
Sbjct: 2598 LEWDDNLNRLFGLP----LGATAHELDEFITLVHPDDRQTVIDACNRSLQEGVDFEEEFR 2653

Query: 148  TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
             +WP +G+     +         +        G  +              +  +     +
Sbjct: 2654 VVWP-DGSI--HWLFDKGKLFCDQQGNPCYMAGACV--DITQRKQTEQELQESNIILRSV 2708

Query: 208  HEIKKGHSSVEKEKYDIFSQQSPPPHL---RMKNKVSSLTEYYAHKDDV--LKTEKYPLL 262
             E       V+  +  I    S    +    ++  +    +     D    LK     ++
Sbjct: 2709 IESTPDVVFVKDLQGRIVVGNSTFAEVFNQPIETLLGKNNDERWSPDIAAYLKENDQRII 2768

Query: 263  TSEESSLPEQEDFHTINLN--QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
                S   E+   H   +     TK  ++                 +  +  A     E 
Sbjct: 2769 QLGRSETFEETLPHPQGMRTYLTTKSPWYDPQGQIIGVIGIARDISDRKAAEAALKRSEQ 2828

Query: 321  LTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
                  +      F++   G     N   + L      + +  +        A + +  +
Sbjct: 2829 DLRTLFNNSYDALFIHDLDGRFLDINDRVVELLGTSRENILARSVAD----FAAEEAPID 2884

Query: 380  AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ---FPENMPQNGIEPE 436
             +  +    +    +          W  +     +    E A +     E         +
Sbjct: 2885 QLAEIFNNVAQGKSLRFE-------WKGKRFDDNSTFDAEVALRKVSLGEKDVILAGVRD 2937

Query: 437  DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
              D +  ++ +        ++ E ++ G+ +   +G ++  N A + + G  VE+ L   
Sbjct: 2938 ISDRKAAEKALRQSEEYNRTLFETSTIGLVLCRMDGTLVDVNPAYAAILGRTVEETLNLT 2997

Query: 497  FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII--IKKLPFSSCY 554
            +     +         L  +                 K+  L+ + +   I +       
Sbjct: 2998 YWEITPETYAEAEAAQLESMAKTGR---YAFEKEYIRKDGSLVPVALSGLIVERNGEQYI 3054

Query: 555  SLTMHDISEWKQEK------------------NKLSHAKKIAEKESSHKSDFLARVSHEI 596
               + DIS+ KQ +                   +L  AK++AE+ +  KS FLA +SHE+
Sbjct: 3055 WSCVEDISQRKQAEVALKEANNQLEQRVLERTAQLQQAKELAEEANQAKSAFLANMSHEL 3114

Query: 597  RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
            RTPL  I+G++++++     P  +  +      I + G+ +L ++ D+LDISKIE+G+M 
Sbjct: 3115 RTPLNGIMGYAQILQR---SPQLSSDHKSNIQVIYQCGSHLLTLIEDILDISKIEAGRME 3171

Query: 657  LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNA 715
            L+ +   L+  +   + + ++ A +K +       +++P ++  D + ++Q+ LN+L NA
Sbjct: 3172 LYCQEFPLNSFLQGVVEICRIKAEQKSLTFTYERPSSLPTVINTDQKRLRQVLLNLLGNA 3231

Query: 716  IHFTPSGGQIIISTTHT-----SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
            I FT  G  I    + T      N  +   + DTGVG++  +L++   PF Q+  S   +
Sbjct: 3232 IKFTSLGS-IKFRVSFTSSRTNHNGFLQFEIEDTGVGISAEQLDRIFLPFEQV-GSLSQK 3289

Query: 771  GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
             EGTGLGL +++ ++     +  + ST   G++   I P+   S 
Sbjct: 3290 AEGTGLGLAISQKLLQMMGTQLTVESTLGVGSIFSFILPIASWSQ 3334



 Score =  190 bits (482), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 46/512 (8%), Positives = 139/512 (27%), Gaps = 24/512 (4%)

Query: 93   GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ--NTWYGKTTLW 150
            G    ++++    +     ++ G    +++    +         L     N +  +    
Sbjct: 1300 GQFITVNQKFCDILDYQESELRGKTFQEITYPDDLPDTKTYAQQLVSGEVNAYSVEKRYV 1359

Query: 151  PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
              +G       +  A  +         F   G++             +  +++++ L E+
Sbjct: 1360 KRDG--QITWSNTTASLVRDATGTPQYF--VGVIEDIEQRKIAEQKLQASERRYATLTEL 1415

Query: 211  KKGHSSVEKEKYDIFSQQS-----PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
                      + +     +                  +   +    + +  E      + 
Sbjct: 1416 SPTGIFRTDPQGNCCYVNTRWCEMAGLTPEDAQGQGWVNALHPDDRERMMQEWDQAAQNR 1475

Query: 266  ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS----HRNHPSLSAYFDEGENL 321
            +        F   +              ++      Y+       +         E E  
Sbjct: 1476 QMPFNTDCRFQKPDGTVIWLVVQATEETDHQGNVTGYVGSITDISDRKQKEIALQESEER 1535

Query: 322  TPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
              +  D   I    V   G     N S   +  Y   + +      +T        D+  
Sbjct: 1536 FRQAFDYASIGMGLVSPEGQWLKVNSSLCEIIGYSEAELL------NTTFQDITHPDDLD 1589

Query: 381  IKPVMLYRSD-RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
            I    + +      +        I    +  + +        +   E +       +  D
Sbjct: 1590 IDLNFVRQMLAGEIVTYKMEKRYIHKQGD-IIWILLNVSLVRDHQGEPLYFISQIQDISD 1648

Query: 440  TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
             +  ++ ++     + ++ E +  G+ +   +G  +  N A + + GY + +  +  +  
Sbjct: 1649 RKAAEQALQDSEQYVRTLFETSPIGLLLCRMDGNFVELNPAFAAIIGYSLAETQQLSYWQ 1708

Query: 500  FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH 559
               ++        L ++         EK  +        + L   I +         ++ 
Sbjct: 1709 ITPESYSEQEQVMLKQLEETGYYGPYEKEYIHKEGYLVPVRLSGRIIERHGEKFIWSSIE 1768

Query: 560  DISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
            DI++ K  + +L  ++         +++F++R
Sbjct: 1769 DITDRKTAEKQLQDSETRYRGIVQDQTEFISR 1800



 Score =  176 bits (446), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 64/574 (11%), Positives = 165/574 (28%), Gaps = 57/574 (9%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTWYGK 146
             D  G +   ++   +       ++IG     + +  +  P     +   + +   W G+
Sbjct: 1170 TDTQGKITYANDHFCEVFQYNREELIGQTHH-LVNSGYHSPAFFQELWTTIGQGKVWKGE 1228

Query: 147  TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS- 205
                  +G++    +D   +P      +   F+   I              +  + +F  
Sbjct: 1229 IKNQAKDGSHY--WVDTVIVPFLDEAGKP--FQYMAIRFEITQRKQAEIALQESEARFRV 1284

Query: 206  ---------HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256
                      L  +     +V ++  DI   Q      +   ++      Y       KT
Sbjct: 1285 FFEHAAVGIALASMTGQFITVNQKFCDILDYQESELRGKTFQEI-----TYPDDLPDTKT 1339

Query: 257  EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES----FEYLSHRNHPSLS 312
                L++ E ++   ++ +   +            +++ +                    
Sbjct: 1340 YAQQLVSGEVNAYSVEKRYVKRDGQITWSNTTASLVRDATGTPQYFVGVIEDIEQRKIAE 1399

Query: 313  AYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
                  E       +  P   F     GN  Y N  +  +      D  +  G ++ L  
Sbjct: 1400 QKLQASERRYATLTELSPTGIFRTDPQGNCCYVNTRWCEMAGLTPEDA-QGQGWVNALHP 1458

Query: 372  APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
              +             R               Q      + +     E+ +         
Sbjct: 1459 DDRERMMQEWDQAAQNRQMPFNTD-----CRFQKPDGTVIWLVVQATEETDHQGNVTGYV 1513

Query: 432  GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
            G   +  D +  +  ++    +     +  S G+ +++ EG  L  N ++ ++ GY   +
Sbjct: 1514 GSITDISDRKQKEIALQESEERFRQAFDYASIGMGLVSPEGQWLKVNSSLCEIIGYSEAE 1573

Query: 492  ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
            +L   F      +   +  +++ ++L+     T +       K+  ++ + + +  +   
Sbjct: 1574 LLNTTFQDITHPDDLDIDLNFVRQMLA-GEIVTYKMEKRYIHKQGDIIWILLNVSLVRDH 1632

Query: 552  SC----YSLTMHDISEWKQEKNKLSHAKKIAEKES----------SHKSDFLARVSHEIR 597
                  +   + DIS+ K  +  L  +++                    +F+     E+ 
Sbjct: 1633 QGEPLYFISQIQDISDRKAAEQALQDSEQYVRTLFETSPIGLLLCRMDGNFV-----ELN 1687

Query: 598  TPLTAIIGFS----EVIKNQRFGPLGNPRYIEYA 627
                AIIG+S    + +   +  P       +  
Sbjct: 1688 PAFAAIIGYSLAETQQLSYWQITPESYSEQEQVM 1721



 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 58/528 (10%), Positives = 152/528 (28%), Gaps = 32/528 (6%)

Query: 86   TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP--NNHIGDLLKRQNTW 143
             +  D  G    ++    +  G       G    +       +            RQ  +
Sbjct: 1420 IFRTDPQGNCCYVNTRWCEMAGLTPEDAQGQGWVNALHPDDRERMMQEWDQAAQNRQMPF 1479

Query: 144  YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                     +GT   + + + A          +G+   G +             +  +++
Sbjct: 1480 NTDCRFQKPDGT--VIWLVVQATEETDHQGNVTGY--VGSITDISDRKQKEIALQESEER 1535

Query: 204  FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL-----TEYYAHKDDVLKTEK 258
            F    +       +   +       S    +   ++   L        +    D+     
Sbjct: 1536 FRQAFDYASIGMGLVSPEGQWLKVNSSLCEIIGYSEAELLNTTFQDITHPDDLDIDLNFV 1595

Query: 259  YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES----FEYLSHRNHPSLSAY 314
              +L  E  +   ++ +     +          ++++  E      +     +  +    
Sbjct: 1596 RQMLAGEIVTYKMEKRYIHKQGDIIWILLNVSLVRDHQGEPLYFISQIQDISDRKAAEQA 1655

Query: 315  FDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
              + E       +  PI   +    GN    NP+F  +  Y     +     LS      
Sbjct: 1656 LQDSEQYVRTLFETSPIGLLLCRMDGNFVELNPAFAAIIGYS----LAETQQLS--YWQI 1709

Query: 374  KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
                 +  + VML + + T          I         +      +  +          
Sbjct: 1710 TPESYSEQEQVMLKQLEETGYYGPYEKEYIHKEG---YLVPVRLSGRIIERHGEKFIWSS 1766

Query: 434  EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
              +  D +  +++++    +   I++  ++ I+    +G IL  N A  + FG    DI+
Sbjct: 1767 IEDITDRKTAEKQLQDSETRYRGIVQDQTEFISRFLPDGTILFVNEAFCRYFGVNASDII 1826

Query: 494  RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553
             + +   + +     +   ++ +   +    +E   +      ++   + + + L   + 
Sbjct: 1827 GQNYQPVIYEPDRERVMQQVSTLSPDNPITIIENRIIV---NGEIRWTQWVNRILFDDTG 1883

Query: 554  ----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
                Y     DI   K+ +  L    +  E+    +++ LAR   ++R
Sbjct: 1884 NFLEYQSVGRDIQARKEAEIALQQLNEELEQRVYERTEELARSEQDLR 1931



 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 54/535 (10%), Positives = 141/535 (26%), Gaps = 50/535 (9%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN--TWYGK 146
            +   G   +++  L + IG    +++     D++    +D + +    +      T+  +
Sbjct: 1550 VSPEGQWLKVNSSLCEIIGYSEAELLNTTFQDITHPDDLDIDLNFVRQMLAGEIVTYKME 1609

Query: 147  TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                  +G    + I L    +     E   F     +             +  ++    
Sbjct: 1610 KRYIHKQGDI--IWILLNVSLVRDHQGEPLYF--ISQIQDISDRKAAEQALQDSEQYVRT 1665

Query: 207  LHEIKKGHSSVEKEKYDIFSQQSPPPHL----RMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
            L E       + +   +          +      + +  S  +         +      L
Sbjct: 1666 LFETSPIGLLLCRMDGNFVELNPAFAAIIGYSLAETQQLSYWQITPESYSEQEQVMLKQL 1725

Query: 263  TSEESSLPEQEDFHTINLNQYTKKQYFGTLQ--NNSKESFEYLSHRNHPSLSAYFDEGEN 320
                   P ++++          +     ++               +  +      + E 
Sbjct: 1726 EETGYYGPYEKEYIHKEGYLVPVRLSGRIIERHGEKFIWSSIEDITDRKTAEKQLQDSET 1785

Query: 321  LTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
                 V         +   G + + N +F       + D I            P + + +
Sbjct: 1786 RYRGIVQDQTEFISRFLPDGTILFVNEAFCRYFGVNASDIIGQNY-------QPVIYEPD 1838

Query: 380  AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
              + +    +       +   + I  N E             +     +    +  +   
Sbjct: 1839 RERVMQQVSTLSPDNPITIIENRIIVNGEIRWTQWVNRI-LFDDTGNFLEYQSVGRDIQA 1897

Query: 440  TRINK------------------RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
             +  +                   ++      L +I     D + I + +G +L  N   
Sbjct: 1898 RKEAEIALQQLNEELEQRVYERTEELARSEQDLRAIFNNVYDALFIYDGDGTLLDVNHRA 1957

Query: 482  SKLFGYPVEDILRKPFTVFL-EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL- 539
             +L G   E +L      F    N   ++  YL  +      +T++    G    ++ L 
Sbjct: 1958 LELHGVTREQLLAATMNDFRTSNNALELIPEYLERLQQG---ETVQFEWEGRRLGDRTLF 2014

Query: 540  --SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
               + +    L       + + DIS+ +    +    ++ A+        FL  V
Sbjct: 2015 DAEISMRSLALGNRPVILVGVRDISQKQAAFRE----RQQAQIALQESQRFLQTV 2065



 Score =  151 bits (382), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 75/650 (11%), Positives = 168/650 (25%), Gaps = 65/650 (10%)

Query: 56   DQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIG 115
            D +    +     +S N F         R  W  D        +             ++G
Sbjct: 2302 DISDRKEAEQALEESRNMFKLVLDTIPQRVFWK-DRQSRFLGCNPAFANDYQLTHADIVG 2360

Query: 116  MRLCDV-SDILHIDPNNHIGDLLKRQNT-WYGKTTLWPIEGTNLYVPIDLAALPIYSRNR 173
                ++               ++  +      +     + G N  + I  + +P+ +   
Sbjct: 2361 KTDLELPWAKWGDLYRADDARVMNTRTPQLNYEEPTNNLAGEN--IWIRSSKIPLTNTQG 2418

Query: 174  EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS-HLHEIKKGHSSVEKEKYDIFSQQSPPP 232
            E  G  G                 +  +++    L    +G   +               
Sbjct: 2419 EVVGVLGC--YDDVTERKQAEQALEESEERLRLALKSANQGLYDLNLTTGKAIVSAEYAT 2476

Query: 233  HL----RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYT---K 285
             L        + +       H DDV +     L     +    + +F             
Sbjct: 2477 MLGYDPATFEETNGKWIERLHPDDVERVTNVYLNYVAGTITDYRVEFRQQTQQGKWKWIL 2536

Query: 286  KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE----GENLTPETVDKCPIPFFV-YSHGN 340
                    + S +    L      S     +E     E      +D      F  Y    
Sbjct: 2537 SVGKIVAWDESGQPLRMLGTHTDISDRKSIEEQLIKREEQLRAALDASETGTFRWYIATK 2596

Query: 341  LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400
                + +   L        +                D+         RS +  +      
Sbjct: 2597 QLEWDDNLNRLFGLP----LGATAHELDEFITLVHPDDRQTVIDACNRSLQEGVDFE-EE 2651

Query: 401  HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
              + W   +   +        +Q        G   +    +  +++++   + L S++E+
Sbjct: 2652 FRVVWPDGSIHWLFDKGKLFCDQQGNPCYMAGACVDITQRKQTEQELQESNIILRSVIES 2711

Query: 461  TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520
            T D + + + +G I+  N   +++F  P+E +L K        +  + +      I+ L 
Sbjct: 2712 TPDVVFVKDLQGRIVVGNSTFAEVFNQPIETLLGKNNDERWSPDIAAYLKENDQRIIQLG 2771

Query: 521  LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIA 578
              +T E+           L+        P            DIS+ K  +  L  +++  
Sbjct: 2772 RSETFEETLPHPQGMRTYLT-TKSPWYDPQGQIIGVIGIARDISDRKAAEAALKRSEQDL 2830

Query: 579  EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
                ++  D L    H++               + RF  + N R +E       +     
Sbjct: 2831 RTLFNNSYDAL--FIHDL---------------DGRFLDI-NDRVVELLGTSRENI---- 2868

Query: 639  DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
             +   + D +  E+               + +   +    A  K +    
Sbjct: 2869 -LARSVADFAAEEAP--------------IDQLAEIFNNVAQGKSLRFEW 2903



 Score =  138 bits (348), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 73/578 (12%), Positives = 152/578 (26%), Gaps = 65/578 (11%)

Query: 47   DSFEQSNFTDQNQESVSNTNYLDSEN---TFVFDPIPRTVRFTWNIDAHGYLKEISEELP 103
            + F  S+  D      +     DSE      V D      RF       G +  ++E   
Sbjct: 1760 EKFIWSSIEDITDRKTAEKQLQDSETRYRGIVQDQTEFISRFL----PDGTILFVNEAFC 1815

Query: 104  KTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYV-PID 162
            +  G  A  +IG     V      +        L   N          + G   +   ++
Sbjct: 1816 RYFGVNASDIIGQNYQPVIYEPDRERVMQQVSTLSPDNPITIIENRIIVNGEIRWTQWVN 1875

Query: 163  LAALPIYSRNREFSGFRGFGIVHVNRVDNDP--------RALGKRLDKKFSHLHEIKKGH 214
                 ++     F  ++  G     +   +           L +R+ ++   L   ++  
Sbjct: 1876 ---RILFDDTGNFLEYQSVG--RDIQARKEAEIALQQLNEELEQRVYERTEELARSEQDL 1930

Query: 215  SSVEKEKYDIFSQQSPPPHL--------------------------RMKNKVSSLTEYYA 248
             ++    YD          L                          R  N    L   Y 
Sbjct: 1931 RAIFNNVYDALFIYDGDGTLLDVNHRALELHGVTREQLLAATMNDFRTSNNALELIPEYL 1990

Query: 249  HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
             +    +T ++             +    I++           L      S +  + R  
Sbjct: 1991 ERLQQGETVQFEWEGRRLGDRTLFDA--EISMRSLALGNRPVILVGVRDISQKQAAFRER 2048

Query: 309  PSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
                    E +      +D  P+   +          N +F+L  +  S ++I       
Sbjct: 2049 QQAQIALQESQRFLQTVLDTFPLNVFWKDRQSRFLGCNRTFMLGAELASPEEIIGKTDYD 2108

Query: 368  TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
                + +     A       +   +  A    +        +++ +        N   E 
Sbjct: 2109 MPWASTEADLYRADD----RQVMDSGQAKLGIIEPQLTADGSTIWLETNKLPLRNLEGEV 2164

Query: 428  MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII----NREGIILSTNRAVSK 483
            +   G   +  D +  + ++  +   L SI E     I ++    + +      N A  K
Sbjct: 2165 IGVLGTYQDISDRKRAEAQLAQQEQFLRSIYEGAEMPIFVVEVLPDNQFRYAGWNLASEK 2224

Query: 484  LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
            + G    D+L K     L +             L       ++           ++    
Sbjct: 2225 MSGLRAVDVLGKHPVEVLGEEIGQHFCQNYCRCLETGKA--IQYEEHLDLPNG-VVWTLT 2281

Query: 544  IIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKI 577
             +  L  S         T  DIS+ K+ +  L  ++ +
Sbjct: 2282 TLNPLKNSEGNIYRIVGTAVDISDRKEAEQALEESRNM 2319



 Score =  135 bits (340), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 67/579 (11%), Positives = 164/579 (28%), Gaps = 37/579 (6%)

Query: 38   KSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKE 97
            +++KE              +  E        + +   +F+ +   + F +  D  G L +
Sbjct: 1896 QARKEAEIALQQLNEELEQRVYERTEELARSEQDLRAIFNNVYDAL-FIY--DGDGTLLD 1952

Query: 98   ISEELPKTIGNYAFKMIGMRLCDVSDILH-IDPNNHIGDLLKRQNTWYGK-TTLWPIEGT 155
            ++    +  G    +++   + D     + ++      + L++  T   +       + T
Sbjct: 1953 VNHRALELHGVTREQLLAATMNDFRTSNNALELIPEYLERLQQGETVQFEWEGRRLGDRT 2012

Query: 156  NLYVPIDLAALPIYSRNREFSGFRGFGIVHVN-RVDNDPRALGKRLDKKFSHLHEIKKGH 214
                 I + +L + +R     G R         R     +   +   +    + +    +
Sbjct: 2013 LFDAEISMRSLALGNRPVILVGVRDISQKQAAFRERQQAQIALQESQRFLQTVLDTFPLN 2072

Query: 215  SSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKD----DVLKTEKYPLLTSEES 267
               +  +               L    ++   T+Y         D+ + +   ++ S ++
Sbjct: 2073 VFWKDRQSRFLGCNRTFMLGAELASPEEIIGKTDYDMPWASTEADLYRADDRQVMDSGQA 2132

Query: 268  SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS----HRNHPSLSAYFDEGENLTP 323
             L   E   T + +    +     L+N   E    L       +     A   + E    
Sbjct: 2133 KLGIIEPQLTADGSTIWLETNKLPLRNLEGEVIGVLGTYQDISDRKRAEAQLAQQEQFLR 2192

Query: 324  ETVDKCPIPFFV-----YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
               +   +P FV      +       N +   ++  ++VD +            P     
Sbjct: 2193 SIYEGAEMPIFVVEVLPDNQFRYAGWNLASEKMSGLRAVDVLGK---------HPVEVLG 2243

Query: 379  NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF-EKANQFPENMPQNGIEPED 437
              I         R      A  +    +  N +  T        N         G   + 
Sbjct: 2244 EEIGQHFCQNYCRCLETGKAIQYEEHLDLPNGVVWTLTTLNPLKNSEGNIYRIVGTAVDI 2303

Query: 438  VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
             D +  ++ +E        +L+     +   +R+   L  N A +  +     DI+ K  
Sbjct: 2304 SDRKEAEQALEESRNMFKLVLDTIPQRVFWKDRQSRFLGCNPAFANDYQLTHADIVGKTD 2363

Query: 498  TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----C 553
                      +       +++    Q L      +    + + +R     L  +      
Sbjct: 2364 LELPWAKWGDLYRADDARVMNTRTPQ-LNYEEPTNNLAGENIWIRSSKIPLTNTQGEVVG 2422

Query: 554  YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
                  D++E KQ +  L  +++         +  L  +
Sbjct: 2423 VLGCYDDVTERKQAEQALEESEERLRLALKSANQGLYDL 2461



 Score =  122 bits (306), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 28/283 (9%), Positives = 83/283 (29%), Gaps = 12/283 (4%)

Query: 306  RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365
                       +  +    ++D+  I     + G + YAN  F  + +Y   + I     
Sbjct: 1141 AERTKKLQISQQELSDLKYSIDQSAIVAITDTQGKITYANDHFCEVFQYNREELIGQ--- 1197

Query: 366  LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
             +  L           + +              +         +   +  +     ++  
Sbjct: 1198 -THHLVNSGYHSPAFFQELWTTIGQGKVWKGEIKNQA---KDGSHYWVDTVIVPFLDEAG 1253

Query: 426  ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
            +      I  E    +  +  ++    +     E  + GIA+ +  G  ++ N+    + 
Sbjct: 1254 KPFQYMAIRFEITQRKQAEIALQESEARFRVFFEHAAVGIALASMTGQFITVNQKFCDIL 1313

Query: 486  GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
             Y   ++  K F      +       Y  +++S ++            ++ ++       
Sbjct: 1314 DYQESELRGKTFQEITYPDDLPDTKTYAQQLVSGEVNA-YSVEKRYVKRDGQITWSNTTA 1372

Query: 546  KKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
              +  ++     +   + DI + K  + KL  +++     +  
Sbjct: 1373 SLVRDATGTPQYFVGVIEDIEQRKIAEQKLQASERRYATLTEL 1415



 Score = 57.3 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 15/168 (8%), Positives = 50/168 (29%), Gaps = 6/168 (3%)

Query: 92   HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151
             G L +++      +G    + + +   +++   + +      + + +   +  +     
Sbjct: 2972 DGTLVDVNPAYAAILGRTVEETLNLTYWEITPETYAEAEAAQLESMAKTGRYAFEKEYIR 3031

Query: 152  IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
             +G+   VP+ L+ L +    R    +    +              K  + +       +
Sbjct: 3032 KDGSL--VPVALSGLIV---ERNGEQYIWSCV-EDISQRKQAEVALKEANNQLEQRVLER 3085

Query: 212  KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
                   KE  +  +Q        M +++ +          +L+    
Sbjct: 3086 TAQLQQAKELAEEANQAKSAFLANMSHELRTPLNGIMGYAQILQRSPQ 3133


>gi|17230584|ref|NP_487132.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17132186|dbj|BAB74791.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 1290

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 112/677 (16%), Positives = 230/677 (33%), Gaps = 44/677 (6%)

Query: 165  ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE----------IKKGH 214
            A+P+   +    G    G            +L ++  +      +          +    
Sbjct: 492  AIPLCDPDGNVRGV--IGAFLDVTERQQLMSLLQQKQEWLDLAQKSGKIGSFDWKLTSNI 549

Query: 215  SSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQED 274
            +   +E  +I+  Q         +        +      ++ E   LL +          
Sbjct: 550  NVWSQELEEIYGLQPGEFGGTFAD---WAKHVHPDDLARVEVELRELLNTGSKEFFSDFR 606

Query: 275  FHTINLNQYTKKQYFGTLQNNSKESFEYLSH----RNHPSLSAYFDEGENLTPETVDKCP 330
                + +    +       ++  +    +             A   + E      +    
Sbjct: 607  IIRQDGSICWLQSRARVFYDDHGQPLRMVGVNVDVTERKQAEAALQQSEARLKRLLQSSI 666

Query: 331  IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390
            I         + +AN +FL +  Y   D +                + + +    +    
Sbjct: 667  IGIIEADPERINFANDAFLKIVGYTHEDLLTGKL----RWQDMTPPEYSELDQAKVEEVI 722

Query: 391  RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450
             +          I+ +      +       A      +       +  + +  +  ++  
Sbjct: 723  NSGFCIPFEKEYIRKDGSRVPIL----LGAARLSSSPLTWVCFILDLTERKQAQAALQQS 778

Query: 451  VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
             +   ++ +       I    G     N+      G  +E      +   L  +      
Sbjct: 779  ELMFRTLADTMPQMFWITQPNGYHEYFNQRWYDYTGTTLEQTQGAGWQNILHPDDVQRTI 838

Query: 511  HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWK- 565
                + L       +E        + +          L   +     +  +  DI + K 
Sbjct: 839  EQWQDSLDTGKDYDIEYRLR-RAADGEYRWHLGRAFPLRDENGRILKWFGSCTDIHDQKL 897

Query: 566  ------QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
                  Q   +   A+   E+ +  K DFLA VSHE+R+PL  I+G+++++K+++   L 
Sbjct: 898  AIEERAQAWEQERAARIELERANRMKDDFLAIVSHELRSPLNPILGWAKLLKSRKLDAL- 956

Query: 620  NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
              +  +    I+R+  L   +++DLLD+S+I  GK++L+   V L   +  A+  V+L A
Sbjct: 957  --KTNQALEVIERNAKLQARLIDDLLDVSRILRGKLSLNVCTVDLVTTIEAALETVRLTA 1014

Query: 680  NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
              K I I+T   +++ R+  D   ++Q+  N+L+NA+ FTP GGQI +S          +
Sbjct: 1015 ESKSIHIQTELTSHVCRVEGDPNRLQQVVWNLLTNAVKFTPEGGQIEVSLERV-GSLAHI 1073

Query: 740  RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TP 798
            +VRDTG G++   L    + F Q       +  G GLGL + + +V+ + G   + S   
Sbjct: 1074 QVRDTGKGISLDFLPYVFERFRQADEVTTRKFGGLGLGLAIVRHLVELHGGAVQVTSPGE 1133

Query: 799  AKGTLIEIIFPLYDTSH 815
              GT   +  PL   S 
Sbjct: 1134 GLGTTFTVKLPLIAVSQ 1150



 Score =  122 bits (305), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 52/542 (9%), Positives = 158/542 (29%), Gaps = 56/542 (10%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNTW 143
            W  D+ G  + +S +L + +G    ++      + S    ++P     I   L++Q  +
Sbjct: 136 IWIFDSEGKTEYVSPQLAQILGYSVERI-----GEFSIFNFLEPQARLEIEQWLEQQQKY 190

Query: 144 YGKT------TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG 197
             +T       L   +G +L+V + L++  I  ++R FSG     ++         +A  
Sbjct: 191 NHQTKQQFDLRLQRRDGASLWVIVSLSS--ILDKHRRFSGA--VAMLTDITEHKHEQAEP 246

Query: 198 KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH-------- 249
               ++   + +I      +   K  +         +  ++          H        
Sbjct: 247 DLERQRLRAILDILPMGVVISDAKGQLLEINPGVKAIWGEDAPLLDNTSQYHQYKGWWPD 306

Query: 250 ---KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
                   +      L + E+ + E+ D  T +  + T       + + +      ++  
Sbjct: 307 TGQPLTAAEWTLARTLATGEAIIGEEIDIATFDGKRKTILNSAVPIYDATGAIVNAVTVN 366

Query: 307 NHPSLSAYFDEGENLTPET-----------VDKCPIPFFVYSHG--NLFYANPSFLLLTK 353
              +     +     +              ++  P   ++      +    N +   + +
Sbjct: 367 VDITERKRVEAALRQSEALAKARAEELETIMETVPAAVWIAHDPLCHSMSVNRAAYDMMR 426

Query: 354 YKSVDDI---EIAGGLSTLLDAPKLSDNNAIKPVMLYRS--DRTCIAASARLHTIQWNRE 408
                 +     +GG        K   +  +  + + ++      + A         +  
Sbjct: 427 VPPGSVMTATPASGGYPFPFKIQKNGQDIPLNELAMQQAGLTGQEVEAEVEFFFSPED-- 484

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468
               +        +         G   +  + +     ++ +   L    ++   G    
Sbjct: 485 -VRHIYGKAIPLCDPDGNVRGVIGAFLDVTERQQLMSLLQQKQEWLDLAQKSGKIGSFDW 543

Query: 469 NREGIILSTNRAVSKLFGYPVEDILRK--PFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
                I   ++ + +++G    +       +   +  +  + +   L E+L+   ++   
Sbjct: 544 KLTSNINVWSQELEEIYGLQPGEFGGTFADWAKHVHPDDLARVEVELRELLNTGSKEFFS 603

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKES 582
                  ++  +  L+   +                 D++E KQ +  L  ++   ++  
Sbjct: 604 -DFRIIRQDGSICWLQSRARVFYDDHGQPLRMVGVNVDVTERKQAEAALQQSEARLKRLL 662

Query: 583 SH 584
             
Sbjct: 663 QS 664



 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 38/312 (12%), Positives = 101/312 (32%), Gaps = 26/312 (8%)

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAG 364
                  A   + +    + ++      +++   G   Y +P    +  Y SV+ I    
Sbjct: 109 TAREVSEAKLGKLKVNYRQLLETAYEGIWIFDSEGKTEYVSPQLAQILGY-SVERIGEFS 167

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
             + L    +L      + +   +           L   + +  + L +        ++ 
Sbjct: 168 IFNFLEPQARL---EIEQWLEQQQKYNHQTKQQFDLRLQRRDGAS-LWVIVSLSSILDKH 223

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
                   +  +  + +  + + ++E  +L +IL+    G+ I + +G +L  N  V  +
Sbjct: 224 RRFSGAVAMLTDITEHKHEQAEPDLERQRLRAILDILPMGVVISDAKGQLLEINPGVKAI 283

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHY------LTEILSLDLRQTLEKITLGSTKEEKL 538
           +G     +         +   P            L   L+      + +    +T + K 
Sbjct: 284 WGEDAPLLDNTSQYHQYKGWWPDTGQPLTAAEWTLARTLATGEA-IIGEEIDIATFDGKR 342

Query: 539 LSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV-- 592
            ++      +  ++   +       DI+E K+ +  L  ++ +A+  +      +  V  
Sbjct: 343 KTILNSAVPIYDATGAIVNAVTVNVDITERKRVEAALRQSEALAKARAEELETIMETVPA 402

Query: 593 ----SHEIRTPL 600
               +H+   PL
Sbjct: 403 AVWIAHD---PL 411



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 37/332 (11%), Positives = 92/332 (27%), Gaps = 29/332 (8%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMI-GM-RLCDVSDILHIDPN-NHIGDLLKRQNTWY 144
             D    +   ++   K +G     ++ G  R  D++   + + +   + +++       
Sbjct: 671 EADPE-RINFANDAFLKIVGYTHEDLLTGKLRWQDMTPPEYSELDQAKVEEVINSGFCIP 729

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            +      +G+   VPI L A  + S             +         +A  ++ +  F
Sbjct: 730 FEKEYIRKDGS--RVPILLGAARLSSSP-----LTWVCFILDLTERKQAQAALQQSELMF 782

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDD--VLKTEKY 259
             L +       + +                   ++    +  +   H DD      +  
Sbjct: 783 RTLADTMPQMFWITQPNGYHEYFNQRWYDYTGTTLEQTQGAGWQNILHPDDVQRTIEQWQ 842

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH-------PSLS 312
             L + +    E       +            L++ +    ++                 
Sbjct: 843 DSLDTGKDYDIEYRLRRAADGEYRWHLGRAFPLRDENGRILKWFGSCTDIHDQKLAIEER 902

Query: 313 AYFDEGENLTPETVDKCPIP----FFVYSHGNLFYANP--SFLLLTKYKSVDDIEIAGGL 366
           A   E E      +++          + SH      NP   +  L K + +D ++    L
Sbjct: 903 AQAWEQERAARIELERANRMKDDFLAIVSHELRSPLNPILGWAKLLKSRKLDALKTNQAL 962

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398
             +    KL        + + R  R  ++ + 
Sbjct: 963 EVIERNAKLQARLIDDLLDVSRILRGKLSLNV 994



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/159 (10%), Positives = 38/159 (23%), Gaps = 4/159 (2%)

Query: 74  FVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI 133
           F          F W    +GY +  ++      G    +  G    ++     +      
Sbjct: 782 FRTLADTMPQMF-WITQPNGYHEYFNQRWYDYTGTTLEQTQGAGWQNILHPDDVQRTIEQ 840

Query: 134 GDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193
                     Y             Y      A P+   N      + FG           
Sbjct: 841 WQDSLDTGKDYDIEYRLRRAADGEYRWHLGRAFPLRDENGRI--LKWFGSCTDIHDQKLA 898

Query: 194 -RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231
                +  +++ +   E+++ +   +     +  +   P
Sbjct: 899 IEERAQAWEQERAARIELERANRMKDDFLAIVSHELRSP 937


>gi|171911480|ref|ZP_02926950.1| PAS/PAC sensor hybrid histidine kinase [Verrucomicrobium spinosum DSM
            4136]
          Length = 1778

 Score =  401 bits (1031), Expect = e-109,   Method: Composition-based stats.
 Identities = 115/752 (15%), Positives = 255/752 (33%), Gaps = 37/752 (4%)

Query: 90   DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG-KTT 148
            D  G +   ++   +  G  A +++G  +  +      +    I + L+  +     +T 
Sbjct: 896  DLAGRVLSWNKGAERLFGYQAREIVGRPIMTLIPDDRFEEEQVILENLRGGSRLEHYETV 955

Query: 149  LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                +GT  +V + L   PI +      G     I           A  +R ++ +  + 
Sbjct: 956  RRRKDGT--HVDVSLTVSPIRNEQGVIVGASK--IARDITQKKQDEAELRRSERLYRAIG 1011

Query: 209  EIKKGHSSVEKEKYDIFSQQSPPPHL--RMKNKVSSLTEYYAHKDDVLKTEKYPLLT--- 263
            E       +                L    + + +      A   +  +  +        
Sbjct: 1012 ESMNFGIWICDAAGLNQYASDSLLKLVGMTQAEFAGEGWMKALHPEDAEAVRQAWRRCVT 1071

Query: 264  -SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL----SAYFDEG 318
              + +    ++ F  ++   +        +++ S    +++      S            
Sbjct: 1072 GPDTTFWESEQRFRGMDGAWHPVLARGVPVRDESGRLQQWVGINLDISELKKTEEALRRS 1131

Query: 319  ENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
            E        +           G     N ++  +T     + +                 
Sbjct: 1132 EAHLTAVFQQAGSGIAQTDLEGRYVMVNDAYCEITGRTREELLGQKVHE----ITHPDDR 1187

Query: 378  NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
             +          D        R           + +        +          I  + 
Sbjct: 1188 VHYGDAHEALAGDGPAFIMENRFVR---ADGVEVWVRSSVVGLRDSQERLSGTLSITQDI 1244

Query: 438  VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
             ++R  +  +     QL  + +     +A ++R       NR  +  +   V  ++ +P 
Sbjct: 1245 TESRHAEDALMASEQQLRLVTDHAPVYLAQVDRHQCYKFANRPYAAQYELEVPQLVGRPM 1304

Query: 498  TVFLEQNTPSVMNHYLTEILSLDLRQT---LEKITLGSTKEEKLLSLRIIIKKLPFSS-- 552
               + +         +   L+ +L +    +   +      ++ +    + +     +  
Sbjct: 1305 REVMGEAAYEAARGCVEAALAGELVEFEMQMHFPSSHDELGDRWIHSVFMPEWQSDQAEV 1364

Query: 553  -CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
              + L   D++  KQ +  L  A+  A +    K DFLAR+SHE+RTPL+ ++  +    
Sbjct: 1365 TGFVLVQTDVTNRKQSELDLEQARDQALEAVRAKDDFLARLSHELRTPLSPVLLLA---S 1421

Query: 612  NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
                 P          + I ++ +L   +++DLLD+++I  GK+ +  + V +   + +A
Sbjct: 1422 EGASNPEVPESVQADFDTIRKNVDLEARLIDDLLDLTRITRGKLAMDLQGVDVHVVLRDA 1481

Query: 672  ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
            +  V+  A  K +++  +       +  D   ++Q+  N+L NA+ FTP  G I++ST  
Sbjct: 1482 LDTVRQDAEAKSLVLTLALHATSRLVWGDKVRLQQVFWNLLKNAVKFTPEYGAIVVSTAL 1541

Query: 732  TSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNS---QQIRGEGTGLGLPLAKAMVDA 787
                  V++RV D G+GMT  E ++  + F Q  ++      R  G GLGL + + +V+ 
Sbjct: 1542 GPEPGTVMIRVSDNGMGMTLEEQQRVFEAFAQGEHAMQGGSHRYGGLGLGLTITRMLVEL 1601

Query: 788  NMGKFYIFST-PAKGTLIEIIFPLYDTSHPHD 818
            + G+    S     GT   I  PL   +   +
Sbjct: 1602 HEGRIQAISEGRGHGTTFVITLPLMKAAAAAE 1633



 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 47/519 (9%), Positives = 142/519 (27%), Gaps = 25/519 (4%)

Query: 87   WNIDAHGYLKEISEELPKTIGNYAF----KMIG--MRLCDVSDILHIDPNNHIGDLLKRQ 140
            + ++  G+L   ++   +  G        +  G           +  + +  +  L + +
Sbjct: 639  YTLNEDGWLTFYNDAARELWGRAPELGRVRWCGSYRMWSLDGQFIPHEQSPMVAALQEAR 698

Query: 141  NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
                 +  +   +GT     + L++ P++    +  G      + V+      +AL +  
Sbjct: 699  PARGAEVVVERPDGTQR--WVALSSDPLHDARGKCRGLINVA-LDVSDERRTQKALAQSE 755

Query: 201  DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
                S +         ++      ++  +    L M          +        +++  
Sbjct: 756  AFLQSVISSTADCIMVMDPLGGLQWTSANGIRMLEMDEASLPTGRSWLDMWQDDTSQRVA 815

Query: 261  LLTSEESSLPEQEDFHT----INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
                 +++  +   F                    +      +  +LS     +     +
Sbjct: 816  QAALRQANAGQVGRFRGFCPTFAGTPKWWDVMVTPIPARDGGAARFLSVARDVTERTNAE 875

Query: 317  EGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
               +     V+            G +   N     L  Y++ + +              +
Sbjct: 876  HALSRLAAIVESSDDAIISNDLAGRVLSWNKGAERLFGYQAREIVGRPIMT-------LI 928

Query: 376  SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
             D+   +  ++  + R            +      + ++       N+    +  + I  
Sbjct: 929  PDDRFEEEQVILENLRGGSRLEHYETVRRRKDGTHVDVSLTVSPIRNEQGVIVGASKIAR 988

Query: 436  EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
            +    + ++ ++        +I E+ + GI I +  G+    + ++ KL G    +   +
Sbjct: 989  DITQKKQDEAELRRSERLYRAIGESMNFGIWICDAAGLNQYASDSLLKLVGMTQAEFAGE 1048

Query: 496  PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-- 553
             +   L       +       ++       E        +     +      +   S   
Sbjct: 1049 GWMKALHPEDAEAVRQAWRRCVTGPDTTFWESEQRFRGMDGAWHPVLARGVPVRDESGRL 1108

Query: 554  --YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
              +     DISE K+ +  L  ++             +A
Sbjct: 1109 QQWVGINLDISELKKTEEALRRSEAHLTAVFQQAGSGIA 1147



 Score =  145 bits (366), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 41/488 (8%), Positives = 122/488 (25%), Gaps = 30/488 (6%)

Query: 116  MRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREF 175
             R   +     +       D          +     +        +            + 
Sbjct: 541  ERFIQMIHKDDVARVRRAMDAALVDPAGNFEQDYRVVSPQGQVRWVTARGRVQRDSTGKP 600

Query: 176  SGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK-GHSSVEKEKYDIFSQQSPPPHL 234
              F G  I              +  +++   L  +      ++ ++ +  F   +     
Sbjct: 601  ERFPGVII--DITGRKQAEEDLEGSEQRHRKLLSLLPMACYTLNEDGWLTFYNDAARELW 658

Query: 235  RMKNKVSSLTEYYAHKDDVL--------KTEKYPLLTSEESSLPEQEDFHTINLNQYTKK 286
                ++  +    +++   L        ++     L     +   +      +  Q    
Sbjct: 659  GRAPELGRVRWCGSYRMWSLDGQFIPHEQSPMVAALQEARPARGAEVVVERPDGTQRWVA 718

Query: 287  QYFGTLQNNSKE----SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLF 342
                 L +   +        L   +         + E      +        V       
Sbjct: 719  LSSDPLHDARGKCRGLINVALDVSDERRTQKALAQSEAFLQSVISSTADCIMVMDPLGGL 778

Query: 343  YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT 402
                +       + ++  E +             D +        R          R   
Sbjct: 779  QWTSA----NGIRMLEMDEASLPTGRSWLDMWQDDTSQRVAQAALRQANAGQVGRFRGFC 834

Query: 403  IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
              +          +      +         +  +  +    +  +     +L +I+E++ 
Sbjct: 835  PTFAGTPKWW-DVMVTPIPARDGGAARFLSVARDVTERTNAEHAL----SRLAAIVESSD 889

Query: 463  DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522
            D I   +  G +LS N+   +LFGY   +I+ +P    +  +        L  +      
Sbjct: 890  DAIISNDLAGRVLSWNKGAERLFGYQAREIVGRPIMTLIPDDRFEEEQVILENLR--GGS 947

Query: 523  QTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIA 578
            +     T+   K+   + + + +  +       +       DI++ KQ++ +L  ++++ 
Sbjct: 948  RLEHYETVRRRKDGTHVDVSLTVSPIRNEQGVIVGASKIARDITQKKQDEAELRRSERLY 1007

Query: 579  EKESSHKS 586
                   +
Sbjct: 1008 RAIGESMN 1015



 Score =  101 bits (251), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 37/387 (9%), Positives = 106/387 (27%), Gaps = 24/387 (6%)

Query: 86   TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ-NT-- 142
             W  DA G  +  S+ L K +G    +  G            +             +T  
Sbjct: 1018 IWICDAAGLNQYASDSLLKLVGMTQAEFAGEGWMKALHPEDAEAVRQAWRRCVTGPDTTF 1077

Query: 143  WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
            W  +     ++G   + P+    +P+   +      +  GI              +R + 
Sbjct: 1078 WESEQRFRGMDG--AWHPVLARGVPVRDESGRLQ--QWVGINLDISELKKTEEALRRSEA 1133

Query: 203  KFSHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
              + + +      +    +                  +  +        H DD +     
Sbjct: 1134 HLTAVFQQAGSGIAQTDLEGRYVMVNDAYCEITGRTREELLGQKVHEITHPDDRVHYGDA 1193

Query: 260  -PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
               L  +  +   +  F   +  +   +     L+++ +     LS     + S + ++ 
Sbjct: 1194 HEALAGDGPAFIMENRFVRADGVEVWVRSSVVGLRDSQERLSGTLSITQDITESRHAEDA 1253

Query: 319  ENLTPETVDKCPI--PFFVYSHGNLF---YANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
               + + +       P ++          +AN  +    + +    +        + +  
Sbjct: 1254 LMASEQQLRLVTDHAPVYLAQVDRHQCYKFANRPYAAQYELEVPQLVGRP-----MREVM 1308

Query: 374  KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA--NQFPENMPQN 431
              +   A +  +        +    ++H    + E         F     +   E     
Sbjct: 1309 GEAAYEAARGCVEAALAGELVEFEMQMHFPSSHDELGDRWIHSVFMPEWQSDQAEVTGFV 1368

Query: 432  GIEPEDVDTRINKRKMEIEVMQ-LCSI 457
             ++ +  + + ++  +E    Q L ++
Sbjct: 1369 LVQTDVTNRKQSELDLEQARDQALEAV 1395



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 61/569 (10%), Positives = 139/569 (24%), Gaps = 87/569 (15%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR-QNTWYG-KTTLWPI 152
               ++    T+G      +G    DV   +  D       +L   + TW          
Sbjct: 65  YFFCNDAYLPTLGLKKDWALGRPASDVWAEVWNDAGPRAESVLHTGRATWDECLLLYLER 124

Query: 153 EGTNLYVPIDLAALPIYSRNREFSGF--------------RGFGIVHVNRVDNDPRA--- 195
            G         +  P+        G               R   ++          +   
Sbjct: 125 NGYPEETYHTFSYSPVPDDAGGVGGMLCVVTEETERVIGERRLAVLQDLAESLAAVSGSD 184

Query: 196 --------------------------------LGKRLDKKFSHLHEIKKGHSSVEKEKYD 223
                                            G+ + +  + +        +      D
Sbjct: 185 ALMEELGGCLQRHRVDMPFSLVYLFDQRSSNGAGQAVLRSLTGIPRGAPLAPATLSCGPD 244

Query: 224 IFSQQSPPPHLRMKNKVSSLTEYYAHKDD-VLKTEKYPLLTSEESSLPEQED-------- 274
                SP P  RM  +   +     H +D        P         P  ++        
Sbjct: 245 DEWGGSPWPVARMLEEGEPVEVSVGHLEDLPSGPHSSPRAAVVLPLFPHGQEEPPAGFLV 304

Query: 275 ---------------FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS--AYFDE 317
                          F  +   Q +            +E  E L   +       A   E
Sbjct: 305 TGVNPCRPLDGPYRGFLELVAGQISAGLATAGAFEMERERAESLLELDRVRRESAAQLRE 364

Query: 318 GENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
            E  T   V+   +  + +   NL      +  LT      +     G            
Sbjct: 365 SEERTRLAVEAGKVGVWDW---NLAAGTVGWSELTHRIFGVEPGGFDGTFDGFLGLVHPV 421

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
           +       + R+       +  L  +  + E    +        +        +G   + 
Sbjct: 422 DRVRVAAEVNRAHAGDGRFNCELRALPPSGE-VRWIECHGQTAFSPQGGPERMHGTVLDI 480

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
            + +  +  +    ++L + L A   G    +     ++ +  +++LF   V +    P 
Sbjct: 481 TERKRGEELLREARLRLETTLFAAEIGTWNWDIRNDQVTADENMARLFFVDVREQESPPM 540

Query: 498 TVFLEQNTPSVMNHYLTEILSL--DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-- 553
             F++      +      + +   D     E+     + + ++  +    +    S+   
Sbjct: 541 ERFIQMIHKDDVARVRRAMDAALVDPAGNFEQDYRVVSPQGQVRWVTARGRVQRDSTGKP 600

Query: 554 --YSLTMHDISEWKQEKNKLSHAKKIAEK 580
             +   + DI+  KQ +  L  +++   K
Sbjct: 601 ERFPGVIIDITGRKQAEEDLEGSEQRHRK 629



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/390 (10%), Positives = 95/390 (24%), Gaps = 40/390 (10%)

Query: 88   NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNT-WYGK 146
              D  G    +++   +  G    +++G ++ +++            + L      +  +
Sbjct: 1148 QTDLEGRYVMVNDAYCEITGRTREELLGQKVHEITHPDDRVHYGDAHEALAGDGPAFIME 1207

Query: 147  TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                  +G  + V +  + + +       SG     I                 +++   
Sbjct: 1208 NRFVRADG--VEVWVRSSVVGLRDSQERLSGT--LSITQDITESRHAEDALMASEQQLRL 1263

Query: 207  LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
            + +    + +             P                           +Y L   + 
Sbjct: 1264 VTDHAPVYLAQVDRHQCYKFANRP------------------------YAAQYELEVPQL 1299

Query: 267  SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
               P +E                       +   +     +H  L   +     +     
Sbjct: 1300 VGRPMREVMGEAAYEAARGCVEAALAGELVEFEMQMHFPSSHDELGDRWIHSVFMPEWQS 1359

Query: 327  DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
            D+  +  FV    ++     S L L +      +E        L          + PV+L
Sbjct: 1360 DQAEVTGFVLVQTDVTNRKQSELDL-EQARDQALEAVRAKDDFLARLSHELRTPLSPVLL 1418

Query: 387  YRSDRTCIA-----ASARLHTIQWNRENSL-----AMTFIPFEKANQFPENMPQNGIEPE 436
              S+            A   TI+ N +         +      +     +    +     
Sbjct: 1419 LASEGASNPEVPESVQADFDTIRKNVDLEARLIDDLLDLTRITRGKLAMDLQGVDVHVVL 1478

Query: 437  DVDTRINKRKMEIEVMQLCSILEATSDGIA 466
                   ++  E + + L   L ATS  + 
Sbjct: 1479 RDALDTVRQDAEAKSLVLTLALHATSRLVW 1508


>gi|298244388|ref|ZP_06968194.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
            racemifer DSM 44963]
 gi|297551869|gb|EFH85734.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
            racemifer DSM 44963]
          Length = 1349

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 105/774 (13%), Positives = 254/774 (32%), Gaps = 50/774 (6%)

Query: 54   FTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM 113
             TD +++  +      SE  +         +  W    +G  + +++     +G     M
Sbjct: 605  TTDIDEQKQAEQRSKASEENWRVLAETVP-QMVWTTRPNGQHEYVNQRWCDYMGVTVEHM 663

Query: 114  IGMRLCDV--SDILHIDPNNHIG-DLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYS 170
               R   +        +    +    L     +  +      + T  Y      A+P+  
Sbjct: 664  QSDRWAPLPFIHPDDREGTRALWQHALDTGGMYEHEERFRNSQ-TGAYRWFLARAMPVRD 722

Query: 171  RNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS- 229
               +    + FG +             K  ++ +  L E              +      
Sbjct: 723  GAGQI--LKWFGTITDIEDQKRIEQQLKESEENWRVLAETVPQLVWASSPDGRVEYWNQR 780

Query: 230  --PPPHLRMKNKVSSLTEYYAHKDDVLKTE--KYPLLTSEESSLPEQEDFHTINLNQYTK 285
                     ++ +      + H D+   T    + +L +      E              
Sbjct: 781  WYTYTGSAPEHALGHEWSQFLHPDEYQHTLMVWHHVLETGRPYEIEYRLKEGQTGAYRWF 840

Query: 286  KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE----TVDKCPIPFFV-YSHGN 340
                  +++++ +  ++             ++    + +      +  P   ++    G+
Sbjct: 841  LVRGMPVRDDTSQIVKWFGTCTDIEDQKQAEQKIKESEQYWRVLAETVPQFVWIGQPGGS 900

Query: 341  LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400
              Y N  +     + + + ++  G L  L       D+      +   +  T        
Sbjct: 901  KEYYNQRWFD-YAHAAFEQLQGDGWLEFL-----HPDDYERTQALGRHARETGEPYEIEN 954

Query: 401  HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
                                 +   + +   G   +  + +  +  +     ++  ++ +
Sbjct: 955  RLKDGKTGTYRWFLTRGVPVRDDTGQIVKWFGTVTDIDEQKRTEEALRQSQERVNILMNS 1014

Query: 461  TSDGIAIINREG-IILSTNRAVSKLFGYPVEDILRKPFTVFL--EQNTPSVMNHYLTEIL 517
            +  GI +   EG  I+  N    ++ GY  +D+  +  +          +       E++
Sbjct: 1015 SIIGIFL--AEGEQIVDANDTYLRMTGYTRDDLRARSISWMRMTPPEYLARTQQARQELV 1072

Query: 518  SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-CYSLTMHDISEWKQEKNKLSHAKK 576
                    EK  +   K+   L + + +  L          + D S  K+ + +      
Sbjct: 1073 VQQYGTPYEKEYVC--KDGSRLPVVVGVVALRRDPLHTIGFVLDNSARKELEQR------ 1124

Query: 577  IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
                    K DF++  SHE+R PL A+   ++ +  +R             + ++     
Sbjct: 1125 --------KDDFISMASHELRNPLAALKMQTQ-LVQKRLERQSLHEAATALSRVEGPVKQ 1175

Query: 637  VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696
            +  ++ +LLD+SKI++GK+    E V LD  + E    +Q  +    I +R +  +++  
Sbjct: 1176 LERLIGELLDVSKIQAGKLEYVRETVDLDALLHEVADTMQQLSTTHIIAVRGAVPHSL-- 1233

Query: 697  ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKA 756
             + D   + Q+ +N++SNAI ++P    + +    +    + + V D G+G+   + +K 
Sbjct: 1234 -VGDKDRLGQVFINLISNAIKYSPGAETVEMDLDASPEAAI-IGVHDHGLGIPREQCDKI 1291

Query: 757  MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             + F +    +Q    G G+GL +   +V  + G   + ST  +G+   +  PL
Sbjct: 1292 FERFYRAAGPKQKAIPGLGMGLYIVAEIVKRHGGTITVDSTVGEGSTFTVTLPL 1345



 Score =  181 bits (460), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 44/510 (8%), Positives = 112/510 (21%), Gaps = 27/510 (5%)

Query: 85   FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD-LLKRQNTW 143
            F W +   G  +  +    +  G  +    G                      ++    +
Sbjct: 508  FVWIMHPDGSAEYANPRWCEYTGMTSQHYQGDGWLQAIHPDDRQRVLAGWQSAVQAGRPY 567

Query: 144  YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             G+        T  Y        P          +  FG               K  ++ 
Sbjct: 568  EGEQ-RLRNSTTGDYRWFLARGAPFKDAQGTILKY--FGTTTDIDEQKQAEQRSKASEEN 624

Query: 204  FSHLHEIKKGHSSVEKEKYDIFSQQSP-------PPHLRMKNKVSSLTEYYAHKDDVLKT 256
            +  L E         +                         ++ + L   +    +  + 
Sbjct: 625  WRVLAETVPQMVWTTRPNGQHEYVNQRWCDYMGVTVEHMQSDRWAPLPFIHPDDREGTRA 684

Query: 257  EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
                 L +      E+   ++              +++ + +  ++             +
Sbjct: 685  LWQHALDTGGMYEHEERFRNSQTGAYRWFLARAMPVRDGAGQILKWFGTITDIEDQKRIE 744

Query: 317  EGENLTPE----TVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
            +    + E      +  P   +  S  G + Y N  +   T       +           
Sbjct: 745  QQLKESEENWRVLAETVPQLVWASSPDGRVEYWNQRWYTYTGSAPEHALGHE------WS 798

Query: 372  APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
                 D      ++ +    T           +                 +   + +   
Sbjct: 799  QFLHPDEYQHTLMVWHHVLETGRPYEIEYRLKEGQTGAYRWFLVRGMPVRDDTSQIVKWF 858

Query: 432  GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
            G   +  D +  ++K++        + E     + I    G     N+          E 
Sbjct: 859  GTCTDIEDQKQAEQKIKESEQYWRVLAETVPQFVWIGQPGGSKEYYNQRWFDYAHAAFEQ 918

Query: 492  ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
            +    +  FL  +                    +E       K             +   
Sbjct: 919  LQGDGWLEFLHPDDYERTQALGRHARETGEPYEIENRL-KDGKTGTYRWFLTRGVPVRDD 977

Query: 552  SC----YSLTMHDISEWKQEKNKLSHAKKI 577
            +     +  T+ DI E K+ +  L  +++ 
Sbjct: 978  TGQIVKWFGTVTDIDEQKRTEEALRQSQER 1007



 Score =  170 bits (432), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 47/514 (9%), Positives = 113/514 (21%), Gaps = 25/514 (4%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQNTW 143
             W     GY+   ++      G    +  G      +               ++    +
Sbjct: 268 LVWTGRPDGYVDSYNQRWRDYTGLTTEEAQGDGWMQCTHPEDRQRVLETWQRAVQTGEPY 327

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +  L     T  Y    + A P          +   G            A  + L   
Sbjct: 328 ETEQRLRH-GTTGEYRWFLMQATPYTDAQGTILKY--VGTCTDIHDKKRAEAELRALIDA 384

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
              L  +         E  +                   L   +              L 
Sbjct: 385 IPQLVWMLG--PDGSSEYGNQRWCDYTNMSFEQYQGDGWLQAIHPDDYQHTLMLWRHALE 442

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
           + E    E    +               +++ + +  ++             +   +   
Sbjct: 443 TGEPFEIEYRLKNGQTGGYRWFLARALPVRDEAGQILKWFGTCTDIHEKKQIE---DDIR 499

Query: 324 ETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
             VD  P   ++ +  G+  YANP +   T   S    +  G L  +    +       +
Sbjct: 500 ALVDAIPQFVWIMHPDGSAEYANPRWCEYTGMTS-QHYQGDGWLQAIHPDDRQRVLAGWQ 558

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             +             RL                     +     +   G   +  + + 
Sbjct: 559 SAVQA---GRPYEGEQRLRNSTTGD--YRWFLARGAPFKDAQGTILKYFGTTTDIDEQKQ 613

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF-- 500
            +++ +        + E     +      G     N+      G  VE +    +     
Sbjct: 614 AEQRSKASEENWRVLAETVPQMVWTTRPNGQHEYVNQRWCDYMGVTVEHMQSDRWAPLPF 673

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE-EKLLSLRIIIKKLPFSSC----YS 555
           +  +            L        E        +             +   +     + 
Sbjct: 674 IHPDDREGTRALWQHALDTG--GMYEHEERFRNSQTGAYRWFLARAMPVRDGAGQILKWF 731

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
            T+ DI + K+ + +L  +++     +      +
Sbjct: 732 GTITDIEDQKRIEQQLKESEENWRVLAETVPQLV 765



 Score =  134 bits (336), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 47/508 (9%), Positives = 117/508 (23%), Gaps = 32/508 (6%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKR---QNTWYGK 146
             G + +I+            ++IG  L +             +   + R     T   +
Sbjct: 152 PEGIVLDINAVPLDDAQVPREEVIGKPLAETPWWSFAPASQEQLRAAIARANAGETVCFE 211

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
             + P EG  + +  +    P    +         GI                L      
Sbjct: 212 ALVRPREG--MLLSFESVITPHMDADHHVEYLVIAGI--DVTARKRAERDIHALIDAIPQ 267

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
           L    +    V+                   +    +   +      +       + + E
Sbjct: 268 LVWTGRPDGYVDSYNQRWRDYTGLTTEEAQGDGW--MQCTHPEDRQRVLETWQRAVQTGE 325

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
               EQ   H                 +      +Y+            +         +
Sbjct: 326 PYETEQRLRHGTTGEYRWFLMQATPYTDAQGTILKYVGTCTDIHDKKRAEAE---LRALI 382

Query: 327 DKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
           D  P   + +   G+  Y N  +   T   S +  +  G L  +              ++
Sbjct: 383 DAIPQLVWMLGPDGSSEYGNQRWCDYTNM-SFEQYQGDGWLQAIHPDDYQH-----TLML 436

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
              +  T                             ++  + +   G   +  + +  + 
Sbjct: 437 WRHALETGEPFEIEYRLKNGQTGGYRWFLARALPVRDEAGQILKWFGTCTDIHEKKQIE- 495

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
                   + ++++A    + I++ +G     N    +  G   +      +   +  + 
Sbjct: 496 ------DDIRALVDAIPQFVWIMHPDGSAEYANPRWCEYTGMTSQHYQGDGWLQAIHPDD 549

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDI 561
              +       +        E+    ST                 +      Y  T  DI
Sbjct: 550 RQRVLAGWQSAVQAGRPYEGEQRLRNST-TGDYRWFLARGAPFKDAQGTILKYFGTTTDI 608

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFL 589
            E KQ + +   +++     +      +
Sbjct: 609 DEQKQAEQRSKASEENWRVLAETVPQMV 636



 Score =  116 bits (290), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 40/496 (8%), Positives = 108/496 (21%), Gaps = 41/496 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D    +   +      +G     ++G           +   +    + K + T      
Sbjct: 33  VDDTARIVYANTSAQTMLGASREALLGNSFWRGVPQ--LVSPSLYQAVRKTRQTQEPTDV 90

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFR-GFGIVHVNRVDNDPRALGKRLDKKFSHL 207
            +          +     P         G    F  +       +    G+RL       
Sbjct: 91  EYHS--PVTRTWLHAHLAP------TVGGLTLQFHQMRAPTPHQETFPRGERLCIDDLDG 142

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMK-NKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
              + G   +  E   +     P    ++   +V                 +  L  +  
Sbjct: 143 LHTRIGI--LTPEGIVLDINAVPLDDAQVPREEVIGKPLAETPWWSFAPASQEQLRAAIA 200

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS----AYFDEGENLT 322
            +   +            ++    + ++      +   H  +  ++          E   
Sbjct: 201 RANAGETV--CFEALVRPREGMLLSFESVITPHMDADHHVEYLVIAGIDVTARKRAERDI 258

Query: 323 PETVDKCPIPFFVYSHGNLFY-ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
              +D  P   +           N  +   T   + +  +  G +              +
Sbjct: 259 HALIDAIPQLVWTGRPDGYVDSYNQRWRDYTGLTTEEA-QGDGWMQCTHPED---RQRVL 314

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
           +                RL                     +     +   G   +  D +
Sbjct: 315 ETWQRAVQTGEPYETEQRLR--HGTTGEYRWFLMQATPYTDAQGTILKYVGTCTDIHDKK 372

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
             + +       L ++++A    + ++  +G     N+          E      +   +
Sbjct: 373 RAEAE-------LRALIDAIPQLVWMLGPDGSSEYGNQRWCDYTNMSFEQYQGDGWLQAI 425

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE-EKLLSLRIIIKKLPFSSC----YSL 556
             +            L        E        +             +   +     +  
Sbjct: 426 HPDDYQHTLMLWRHALETGEP--FEIEYRLKNGQTGGYRWFLARALPVRDEAGQILKWFG 483

Query: 557 TMHDISEWKQEKNKLS 572
           T  DI E KQ ++ + 
Sbjct: 484 TCTDIHEKKQIEDDIR 499



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 37/261 (14%), Positives = 77/261 (29%), Gaps = 22/261 (8%)

Query: 318 GENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
             +     +++ P   FFV     + YAN S   +        +  +         P+L 
Sbjct: 15  SRDTLLSILERLPDALFFVDDTARIVYANTSAQTMLGASREALLGNSFWRGV----PQLV 70

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
             +  + V   R  +            +      L     P         +  +     +
Sbjct: 71  SPSLYQAVRKTRQTQEPTDVEYHSPVTR----TWLHAHLAPTVGGLTLQFHQMRAPTPHQ 126

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
           +   R  +  ++         L+     I I+  EGI+L  N         P E+++ KP
Sbjct: 127 ETFPRGERLCIDD--------LDGLHTRIGILTPEGIVLDINAVPLDDAQVPREEVIGKP 178

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLR-QTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-- 553
                  +        L   ++     +T+    L   +E  LLS   +I     +    
Sbjct: 179 LAETPWWSFAPASQEQLRAAIARANAGETVCFEALVRPREGMLLSFESVITPHMDADHHV 238

Query: 554 --YSLTMHDISEWKQEKNKLS 572
               +   D++  K+ +  + 
Sbjct: 239 EYLVIAGIDVTARKRAERDIH 259


>gi|254411816|ref|ZP_05025592.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196181538|gb|EDX76526.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 1478

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 106/513 (20%), Positives = 210/513 (40%), Gaps = 30/513 (5%)

Query: 322 TPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
               +        V +    +   N + L L+ Y   +       L             A
Sbjct: 275 LDNIISSLSDGLIVLNKNIRVESFNEATLFLSGYSPKEL--RDQPLERFFKEDNF---LA 329

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
                  +             T       S+ ++       N          +  +    
Sbjct: 330 HLQANDSQQSGFLGRYETTFFTKT---GTSVPVSVTASVMKNSSDRIQGIVCLVQDISAR 386

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +     +  +      + E   DG+ + + +G IL  N A  ++FGY   ++L +   + 
Sbjct: 387 KRADEALRRQ----ALMFETIYDGVIVTDLKGHILDWNPAAERIFGYEKTEVLGQTCGMV 442

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY--SLTM 558
            + +  + +   + + L  + R T E   +     + +    ++  +             
Sbjct: 443 YQPDEATALTQQMLDSLLHEGRWTREIEFIRKDGNKGVCETVVVPLRDDLGRPIAAIGVN 502

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            D++E K+ +NKL  A++ A + +  K+ FLA +SHEIRTP+  ++G SE++        
Sbjct: 503 RDVTERKEYENKLVEAREAAVEAARAKAQFLANMSHEIRTPMNGVLGMSELLLTTDL--- 559

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
            NPR +++   +  SG  +L ++ND+LD SK+E+G+M L  + ++++ ++ + + L    
Sbjct: 560 -NPRQLDFVKTLQVSGEHLLGVINDILDFSKLEAGEMRLDVDELNINRSLEDVLDLCSPQ 618

Query: 679 ANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHT---- 732
           A  K + +      ++PR ++ D+  ++QI  N++SN+I FT SG   I +S        
Sbjct: 619 AEAKDLELALLVDTDVPRRLMGDVGRLRQICTNLVSNSIKFTESGEVVIRVSVHQELEEQ 678

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
              ++   VRDTG+G+   +  K  + F Q+ +S   +  GTGLGL + K +V+   G+ 
Sbjct: 679 DKLQLRFAVRDTGIGINPEDKSKLFQAFSQVDSSTTRKYGGTGLGLAICKQLVEMMGGEI 738

Query: 793 YIFSTPAKGTLIEIIF-----PLYDTSHPHDCI 820
            + S    G+           P+    +  D I
Sbjct: 739 GVESQLGVGSTFWFTITFGKVPVGTEENESDRI 771



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 50/137 (36%), Gaps = 7/137 (5%)

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
              ++  +    L +I+ + SDG+ ++N+   + S N A   L GY  +++  +P   F 
Sbjct: 263 KQLQETTVSKSYLDNIISSLSDGLIVLNKNIRVESFNEATLFLSGYSPKELRDQPLERFF 322

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLT 557
           +++       +L    S          T   TK    + + +    +  S          
Sbjct: 323 KEDN---FLAHLQANDSQQSGFLGRYETTFFTKTGTSVPVSVTASVMKNSSDRIQGIVCL 379

Query: 558 MHDISEWKQEKNKLSHA 574
           + DIS  K+    L   
Sbjct: 380 VQDISARKRADEALRRQ 396



 Score = 48.9 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/139 (8%), Positives = 31/139 (22%), Gaps = 7/139 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNTWYGK 146
            D  G++ + +    +  G    +++G     V             +  LL     W  +
Sbjct: 410 TDLKGHILDWNPAAERIFGYEKTEVLGQTCGMVYQPDEATALTQQMLDSLLHEGR-WTRE 468

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                 +G       +   +P+             G+        +         +    
Sbjct: 469 IEFIRKDGNKGV--CETVVVPLRDDLGRPIAA--IGVNRDVTERKEYENKLVEAREAAVE 524

Query: 207 LHEIKKGHSSVEKEKYDIF 225
               K    +    +    
Sbjct: 525 AARAKAQFLANMSHEIRTP 543



 Score = 44.6 bits (104), Expect = 0.069,   Method: Composition-based stats.
 Identities = 20/224 (8%), Positives = 61/224 (27%), Gaps = 6/224 (2%)

Query: 94  YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIE 153
            ++  +E      G    ++    L       +   +    D  +       +TT +   
Sbjct: 294 RVESFNEATLFLSGYSPKELRDQPLERFFKEDNFLAHLQANDSQQSGFLGRYETTFFTKT 353

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
           GT++ V +  +   + + +    G     +V             +R    F  +++    
Sbjct: 354 GTSVPVSVTASV--MKNSSDRIQGI--VCLVQDISARKRADEALRRQALMFETIYDGV-I 408

Query: 214 HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE 273
            + ++    D                +          D+     +  L +        +E
Sbjct: 409 VTDLKGHILDWNPAAERIFGYEKTEVLGQTCGMVYQPDEATALTQQMLDSLLHEGRWTRE 468

Query: 274 -DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
            +F   + N+   +     L+++       +      +    ++
Sbjct: 469 IEFIRKDGNKGVCETVVVPLRDDLGRPIAAIGVNRDVTERKEYE 512


>gi|242280792|ref|YP_002992921.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens
           DSM 2638]
 gi|242123686|gb|ACS81382.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens
           DSM 2638]
          Length = 719

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 116/515 (22%), Positives = 213/515 (41%), Gaps = 14/515 (2%)

Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDI 360
           YL+      +        +L    ++  P+   V    G + +AN     +      + I
Sbjct: 60  YLNIDKRKKVEIELQRERDLMGSIMETSPMGILVMDNDGKIIFANDQAARVHGVAREEII 119

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
                                + +   R  +   A     H I W     + ++      
Sbjct: 120 GKQHNDPIWKITAHDGSPFPEERLAFNRVMKIRNAVLDIRHAIHWLDGRKVLLSINASPI 179

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
            +             +    +  +  ++    +  S+++     I +++ +  IL  NR 
Sbjct: 180 ISDDGSIKKVVASVEDITTRKKVEEALKESAYRFRSLVKTAESVIILLSPDKKILEFNRM 239

Query: 481 VSKLFGYPVEDILRKPFTVFLEQNT-PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
             +LFG    ++L + +             N     +LS +  + LE   L    EE+++
Sbjct: 240 AEQLFGRTRHEVLGRDYYELFVPERFWPDHNRQFATVLSGNPLRLLENYVLARGGEERMI 299

Query: 540 SLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
              +                  DI+E K+ + +L  A+  AE+ S  KS+FLA +SHEIR
Sbjct: 300 QWSLSRLLDAKGGALGVLAVGQDITERKRSEVELCEARDAAEEASRAKSEFLANMSHEIR 359

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TP++AIIG SE+  N             Y   + ++   +L I+ND+LDISKIE+ KM L
Sbjct: 360 TPISAIIGMSEMTLNTNLTG----EQQGYLVTVKKAAESLLHIINDILDISKIEARKMEL 415

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAI 716
             E  +L E + + +S++++ A EK I +R + ++++ R    D   + QI +N++ NAI
Sbjct: 416 RPEDFNLYEMLEKQLSVLKVQAEEKGIELRANVSDDVSRCYHGDEYRLGQIIINLVGNAI 475

Query: 717 HFTPSGGQIIIST----THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
            FT  G  + +S     +      +  RV+DTG+G++  + EK  + F Q+      R  
Sbjct: 476 KFTEKG-YVEVSVDHVGSFEEGAVLEFRVKDTGIGISEDKCEKLFESFVQLNAGYSKRHP 534

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           G+GLGL +++ +V+   G     S    G+  +  
Sbjct: 535 GSGLGLAISRQLVEMMGGHITFSSREGWGSEFKFT 569



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/258 (10%), Positives = 70/258 (27%), Gaps = 19/258 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCD-----VSDILHIDPNNHIG--DLLKRQN 141
           +D  G +   +++  +  G    ++IG +  D      +      P   +    ++K +N
Sbjct: 94  MDNDGKIIFANDQAARVHGVAREEIIGKQHNDPIWKITAHDGSPFPEERLAFNRVMKIRN 153

Query: 142 TWYGKT--TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199
                     W ++G    V + + A PI S +      +    V             K 
Sbjct: 154 AVLDIRHAIHW-LDGR--KVLLSINASPIISDDGSIK--KVVASVEDITTRKKVEEALKE 208

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL--RMKNKVSS---LTEYYAHKDDVL 254
              +F  L +  +    +      I         L  R +++V        +   +    
Sbjct: 209 SAYRFRSLVKTAESVIILLSPDKKILEFNRMAEQLFGRTRHEVLGRDYYELFVPERFWPD 268

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
              ++  + S       +         +   +     L +    +   L+     +    
Sbjct: 269 HNRQFATVLSGNPLRLLENYVLARGGEERMIQWSLSRLLDAKGGALGVLAVGQDITERKR 328

Query: 315 FDEGENLTPETVDKCPIP 332
            +       +  ++    
Sbjct: 329 SEVELCEARDAAEEASRA 346


>gi|298528782|ref|ZP_07016186.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298512434|gb|EFI36336.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 1037

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 125/747 (16%), Positives = 257/747 (34%), Gaps = 53/747 (7%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLW 150
            G    ++ E  K +G    ++ G    D      ++     +  L  ++          
Sbjct: 163 DGRFLRLNPEWEKVLGYTTQELEGRMFLDFVHPDDVESTVAAVSRLENQEQVLNYVNRFC 222

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH-- 208
             +G+  Y  I+  + P+        G + +             A  +  ++  +     
Sbjct: 223 CKDGS--YRWIEWRSRPL--------GRQIYAAARDITEHKKVLAKLQESEQSLARTLQA 272

Query: 209 --------EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
                   ++      +      +          R+ + V  L    A    V+      
Sbjct: 273 IGDGVISTDMDSRVVQMNPVAEKLCGWDEAEARGRLLSDV--LRIVNADTRAVVDNPLQK 330

Query: 261 LLTSEESS-LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
           +  +  +  L       +    +Y        ++++       +      +      E  
Sbjct: 331 VFATGHTLGLASHVMLLSRTGEEYHIADSAAPIRDSHGNITGAVLVFRDVTREHAQAERL 390

Query: 320 NLTPETVDKC----PIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
             + E +D+         + ++   N  Y +  +  +  Y   +  +   G +  +    
Sbjct: 391 RTSEERLDRAMAVKNEGIWDWNLVTNETYFDDRYYTMAGYSPNEFPQHFSGWAERVHPED 450

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
           L    +     +                   +             + N     +   G  
Sbjct: 451 LQKATSAIEDCIA---GKTETFDIEFRFKHKDGSWIWIQGQGKIMERNPDDSPLRMIGTH 507

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR-AVSKLFGYPVEDIL 493
            +  + ++ +  +         IL+A  D I   + EGII   N  A   L   P   I 
Sbjct: 508 TDITERKLAEEALLESEEMQRKILQAVPDLIVRTDLEGIITFVNELAYPGLSYIPQASIY 567

Query: 494 RKPFTVFLEQNTPSVMNH-YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
            +    F++           L  +      Q        + +E   +   I    +    
Sbjct: 568 GRSLFSFIDARDLPRAQENALKRLEKNIGPQ----EYRLNFEEGISIDTEINGAVVYDKE 623

Query: 553 ----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                    + DI++ K++K +L  AK+ AE  +  KS FLA +SHE+RTP   I+G  +
Sbjct: 624 SMPVGMVYVIRDITDRKRDKKELLKAKEQAEAANQAKSRFLANMSHELRTPFNGIMGMMQ 683

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
           +++        +    EY +   +S      +++D+LD+S +E+G+M++      L EA+
Sbjct: 684 LLQTTTL----DEEQQEYVDMAIKSSQRFARLLSDILDLSSVETGRMSIFNSEFDLGEAL 739

Query: 669 SEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIII 727
                +    A EK + +     +++P +++ D   VKQI + ++SNA+ FT  G  + I
Sbjct: 740 GSIHDIFDASAREKGVFLEYLPGDDVPAKVIGDAVRVKQILITLVSNALKFTEKG-VVEI 798

Query: 728 ST---THTSNEEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
                      +V +   V DTG+G+   +L+    PF Q+  S   + +G GLGL + K
Sbjct: 799 RLDALCAAKGGDVRIKFAVSDTGIGIPEDQLKNLFTPFEQLDGSYTRKHQGAGLGLSIVK 858

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFP 809
            +V+   G   I S P +GT + ++ P
Sbjct: 859 RLVELMNGNIDIDSLPGEGTTVHVVLP 885



 Score =  160 bits (406), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 62/540 (11%), Positives = 157/540 (29%), Gaps = 28/540 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNTW 143
            +     G     +  + K  G    + +   + D++   + + ++   I  LL+     
Sbjct: 29  VFTSTPEGRFLTANPAMAKMFGYDTPQEMIDSITDIASEFYAESSDRNKILQLLEVHQQV 88

Query: 144 YG-KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF--GIVHVNRVDNDPRALGKRL 200
              +  L   +G+  ++   +  L +   +   + + GF   I    +  +      + L
Sbjct: 89  ENFECRLIRRDGS--WLWSSIDVLAMRDESGSITHYHGFITDITEHKQAQDQIEKKSEEL 146

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY- 259
           +  F+   ++    ++V+     +  +         +     +   + H DDV  T    
Sbjct: 147 ELYFNSSLDLLCI-ANVDGRFLRLNPEWEKVLGYTTQELEGRMFLDFVHPDDVESTVAAV 205

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
             L ++E  L     F   + +    +     L    +          H  + A   E E
Sbjct: 206 SRLENQEQVLNYVNRFCCKDGSYRWIEWRSRPLGR--QIYAAARDITEHKKVLAKLQESE 263

Query: 320 NLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
                T+               +   NP    L  +   +          L      +  
Sbjct: 264 QSLARTLQAIGDGVISTDMDSRVVQMNPVAEKLCGWDEAEA-RGRLLSDVLRIVNADTRA 322

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
               P+    +    +  ++ +  +    E    +        +          +  +  
Sbjct: 323 VVDNPLQKVFATGHTLGLASHVMLLSRTGEEYH-IADSAAPIRDSHGNITGAVLVFRDVT 381

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP-- 496
                  ++     +L   +   ++GI   N        +     + GY   +  +    
Sbjct: 382 REHAQAERLRTSEERLDRAMAVKNEGIWDWNLVTNETYFDDRYYTMAGYSPNEFPQHFSG 441

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI---IIKKLPFSS- 552
           +   +           + + ++    +T +       K+   + ++    I+++ P  S 
Sbjct: 442 WAERVHPEDLQKATSAIEDCIA-GKTETFDIEFRFKHKDGSWIWIQGQGKIMERNPDDSP 500

Query: 553 -CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
                T  DI+E K  +  L  ++++  K      D +      +RT L  II F   + 
Sbjct: 501 LRMIGTHTDITERKLAEEALLESEEMQRKILQAVPDLI------VRTDLEGIITFVNELA 554



 Score =  115 bits (289), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 39/266 (14%), Positives = 91/266 (34%), Gaps = 10/266 (3%)

Query: 323 PETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
            E + K P+  F     G    ANP+   +  Y +  ++     ++ +        ++  
Sbjct: 19  QELLIKAPMGVFTSTPEGRFLTANPAMAKMFGYDTPQEM--IDSITDIASEFYAESSDRN 76

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
           K + L    +       RL        + L  +       ++       +G   +  + +
Sbjct: 77  KILQLLEVHQQVENFECRLIR---RDGSWLWSSIDVLAMRDESGSITHYHGFITDITEHK 133

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
             + ++E +  +L     ++ D + I N +G  L  N    K+ GY  +++  + F  F+
Sbjct: 134 QAQDQIEKKSEELELYFNSSLDLLCIANVDGRFLRLNPEWEKVLGYTTQELEGRMFLDFV 193

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDI 561
             +        ++ + +    Q L  +     K+     +    + L           DI
Sbjct: 194 HPDDVESTVAAVSRLENQ--EQVLNYVNRFCCKDGSYRWIEWRSRPL--GRQIYAAARDI 249

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSD 587
           +E K+   KL  +++   +      D
Sbjct: 250 TEHKKVLAKLQESEQSLARTLQAIGD 275


>gi|153868800|ref|ZP_01998541.1| sensory box histidine kinase/response regulator [Beggiatoa sp. PS]
 gi|152074617|gb|EDN71454.1| sensory box histidine kinase/response regulator [Beggiatoa sp. PS]
          Length = 1054

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 124/586 (21%), Positives = 234/586 (39%), Gaps = 35/586 (5%)

Query: 241  SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE-DFHTINLNQYTKKQYFGTLQN---NS 296
                  + H DD      Y +  ++       E    T +      +     +       
Sbjct: 445  PRFWADHIHPDDREWATTYCVNATKNKQDHSFEYRMITADNRTIWLRDLVTVVVENDKAV 504

Query: 297  KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV----YSHGNLFYANPSFLLLT 352
            K                   + E    +  ++ PI   +    +   +   AN +F  + 
Sbjct: 505  KLYGVMFDITESKQAEKALRQSEEQFRKMFEEGPIGMVIATPSFPSFSFIKANAAFCQML 564

Query: 353  KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
             Y   + +    G           D    + ++    +            I+ + +  + 
Sbjct: 565  GYTEAELL-QLNGADITYPD----DMPINRELLQKALNGEISFYQMEKRYIRKDGK-LVW 618

Query: 413  MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE- 471
                     N   +     G   +  + +  +  +     +  + L+ ++D I I++R+ 
Sbjct: 619  GNLAVSLFHNDEGKVTFFLGKVEDITERKHAEESLR----RFRAALDNSADAIFIVDRQT 674

Query: 472  GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
               +  N+      GY   ++L           T + +     EI+  + + T+   T+ 
Sbjct: 675  MNFVDMNKIACDSIGYSYNELLSMGPQDIKPYFTKAQLATKFDEIIQSECQGTI--ETVH 732

Query: 532  STKEEKLLSLRIIIKKLPFSSCYSLT--MHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
              K+     +   ++ L F   Y L     DI+E KQ +  L  AK+ A+  +  KS+FL
Sbjct: 733  QRKDGTEFPVENFLQSLKFDEGYLLISSARDITEHKQAEIALIQAKEQADSANRAKSEFL 792

Query: 590  ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
            A +SHEIRTP+ A+IGFS+++ ++    + + +   Y + I  +G  +L ++ND+LD+SK
Sbjct: 793  ANMSHEIRTPMNAVIGFSDILASK----VTDKKQKTYLDSIQTAGKSLLTLINDILDLSK 848

Query: 650  IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIA 708
            IE+G++++ +EPV+L    +E   +  L   EK +         +P +L  D   ++Q+ 
Sbjct: 849  IEAGRLDIQYEPVNLQLIFTELQQIFSLKMAEKNLEFILETDETLPPVLFLDETRLRQML 908

Query: 709  LNILSNAIHFTPSGGQIIIST--THTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQ 762
            LN++ NAI FT SG  I +      T N+     +IL V D+G+G+   +     + F Q
Sbjct: 909  LNLMGNAIKFTDSG-YIKLCANKGSTENDHSQVDLILAVEDSGIGIPAEQQALIFESFRQ 967

Query: 763  IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
                   +  GTGLGL + K +V+   G   + S P KG+  EI  
Sbjct: 968  QDGQSTRQYGGTGLGLAITKRLVEMMNGHITVESHPGKGSRFEIAL 1013



 Score = 54.6 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/175 (10%), Positives = 54/175 (30%), Gaps = 7/175 (4%)

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GI 473
                       +     IE + +  +     +     +  S++ +    +   +     
Sbjct: 364 LERQVSERTAELSQRIQEIEQQKIGIQNLAEDLVASQQRYESLVNSIDGVVWEGDANTFQ 423

Query: 474 ILSTNRAVSKLFGYP-VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
               ++   ++ GYP  + +  + +   +  +       Y           + E   +  
Sbjct: 424 FQFVSQHTQRILGYPSEDWLKPRFWADHIHPDDREWATTYCVNATKNKQDHSFEYRMI-- 481

Query: 533 TKEEKLLSLRIIIKKLPFSSCYS---LTMHDISEWKQEKNKLSHAKKIAEKESSH 584
           T + + + LR ++  +  +         M DI+E KQ +  L  +++   K    
Sbjct: 482 TADNRTIWLRDLVTVVVENDKAVKLYGVMFDITESKQAEKALRQSEEQFRKMFEE 536



 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/118 (10%), Positives = 37/118 (31%), Gaps = 6/118 (5%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTW-YGKTTLWPI 152
             + +    + +G    +++ +   D++    +  N   +   L  + ++   +      
Sbjct: 553 FIKANAAFCQMLGYTEAELLQLNGADITYPDDMPINRELLQKALNGEISFYQMEKRYIRK 612

Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
           +G    V  +LA    ++   + + F G   V             +R      +  + 
Sbjct: 613 DGKL--VWGNLAVSLFHNDEGKVTFFLG--KVEDITERKHAEESLRRFRAALDNSADA 666


>gi|120610741|ref|YP_970419.1| multi-sensor hybrid histidine kinase [Acidovorax citrulli AAC00-1]
 gi|120589205|gb|ABM32645.1| multi-sensor hybrid histidine kinase [Acidovorax citrulli AAC00-1]
          Length = 1622

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 125/744 (16%), Positives = 255/744 (34%), Gaps = 33/744 (4%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI-DPNNHIGDLLKRQNTWYGKT 147
             DA G +  ++ +     G    ++ G R   V+      +    +   L     W G+ 
Sbjct: 366  TDAEGRIDWVNSQYEANTGYSLDEVRGRRPSLVASGQTPPETYRQMWSRLIAGLPWRGEF 425

Query: 148  TLWPIEGTNLYVPIDLAALPIYSRNR---EFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
                 +GT  +    L+  P++  +       G        +       R   +  +   
Sbjct: 426  INQRQDGTIYHDEATLS--PVFDDHGRRIAIVGLHENVTERITAHQELQRRERELNEALA 483

Query: 205  SHLHEIKKGHSSVEKEKYDIFSQQSP---PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
                        +      +             +         E     +++ +     +
Sbjct: 484  QQTAIFDNAPPVLIVADGRLLRFNPACLELLGAQPGQLEGRGVEVIFGGEELHRRFLERV 543

Query: 262  LTSEESSLPEQEDFHTINLNQYTKKQYFG----TLQNNSKE-SFEYLSHRNHPSLSAYFD 316
                E+    +E    +  +    +         LQ       +            A   
Sbjct: 544  EGRLEAGESVREVARLVRRDGTVFEARLSGRLLPLQGYGLACIWVVEDVTEARRSEAAMR 603

Query: 317  EGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKS-VDDIEIAGGLSTLLDAPK 374
            E         +   +  F           +     L         + +   + +L    +
Sbjct: 604  EMNERLILAQEAGRVGVFDLDLARDHLVFSEKLASLYGLPHQPQGLRLMDWMDSLHLEDR 663

Query: 375  LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
                  +   +   +     +       +     +   +      + +         G++
Sbjct: 664  PRVQARLDAALAGAATGLQDS-----WRVVRPDGSERWLLCSARIERDAEGRARRLIGVQ 718

Query: 435  PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
             +  + +  + ++  ++    ++++A    +   + +G     NRA  + FG   ED L 
Sbjct: 719  VDVHEQKQLEARLADQLAFQQALVDAIPIPLFHKDGDGRYRGFNRAYEEAFGIRREDFLG 778

Query: 495  KPFT--VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE--EKLLSLRIIIKKLPF 550
            K      FL Q   +        I +       E     +  E    L  +    +    
Sbjct: 779  KTVHEADFLNQAERAEFEADARTIRAGGPPIHKEVDLTYADGEIHHTLFWMHGFQRPDGS 838

Query: 551  SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
                  T+ DI++ ++ + +L  AK++AE+ ++ KS+FLA +SHEIRTP+ AIIG S + 
Sbjct: 839  PGGSIGTLVDITDRQRAERELRRAKELAEETTALKSNFLANMSHEIRTPMNAIIGMSHLA 898

Query: 611  KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
                  P    R  +Y   I ++G  +L ++ND+LD S+IE+GK+ +  +P  LD  +  
Sbjct: 899  LKSGLTP----RQADYVAKIQQAGQHLLGVINDILDFSRIEAGKLVVEKQPFMLDRVLEG 954

Query: 671  AISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIIS 728
               +V   A  K + +    A ++P  ++ D   + QI +N  +NAI FT  G   + + 
Sbjct: 955  MADVVGYKAGVKGLELVLDVAPDVPPHLVGDALRLGQILINFANNAIKFTERGEIHVRVR 1014

Query: 729  TTHTSNEEV--ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
                    V     VRDTG+G+   ++ +  + F Q   S   R  G+GLGL ++K + +
Sbjct: 1015 VVERHGRRVLLRFEVRDTGIGVAPEQMGRLFQSFQQADASTTRRFGGSGLGLAISKNLAE 1074

Query: 787  ANMGKFYIFSTPAKGTLIEIIFPL 810
               G+    S   +G+   ++ PL
Sbjct: 1075 LMGGEVGAESVLGEGSTFWVMLPL 1098



 Score = 89.3 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 46/480 (9%), Positives = 110/480 (22%), Gaps = 44/480 (9%)

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
            +G  L     + AL   S    +    G           +   L     +         
Sbjct: 18  RDGQWLRGWAVVLAL---SAVGAWLAVAGVAEWREASRAQEREGLLGHAAEVLMSQTAGS 74

Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271
               +V        + ++        N   +L      +   L +  Y L  S      E
Sbjct: 75  PLLGAVALLGLSEPTLKAVALGTLPPNAPEALARLAVARGRFLVSGVYVLDASGRVVAHE 134

Query: 272 QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET------ 325
                 + L+   +  +   ++          ++     L       E  TP +      
Sbjct: 135 TPATPALGLDLSHRPYFLQAMRGAVNVYPALGTNSQDRGLYYAAPLYEGDTPASVIVGVV 194

Query: 326 ------------VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSV------DDIEIAGGLS 367
                       + +   P  + S   + +A                   D I       
Sbjct: 195 LVKMSFEPVETQLQRSGYPMALMSPQGIAFAATRPEWRYAIAPPLTQERIDAIRRQRQFG 254

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
            L D                       A   R             +     +     P+ 
Sbjct: 255 ALFDNGVAQALPFRPDAREAVVGGVRYALERRNLEWHDPDGPWQIVMLDDLQALLPGPQR 314

Query: 428 MPQNGIEPEDVD----------TRINKRKMEIEVMQ-LCSILEATSDGIAIINREGIILS 476
                     +               +  + +E  + L + L+++   + I + EG I  
Sbjct: 315 WQIGVGVFTLLVVLGGMLLDMMRHRARMALAMERFRVLGAALQSSPVAVVITDAEGRIDW 374

Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
            N       GY ++++  +  ++     TP      +   L   L        +   ++ 
Sbjct: 375 VNSQYEANTGYSLDEVRGRRPSLVASGQTPPETYRQMWSRLIAGLPWRG--EFINQRQDG 432

Query: 537 KLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
            +      +  +               +++E      +L   ++   +  + ++      
Sbjct: 433 TIYHDEATLSPVFDDHGRRIAIVGLHENVTERITAHQELQRRERELNEALAQQTAIFDNA 492


>gi|297621362|ref|YP_003709499.1| putative sensory histidine kinase [Waddlia chondrophila WSU 86-1044]
 gi|297376663|gb|ADI38493.1| putative sensory histidine kinase [Waddlia chondrophila WSU 86-1044]
          Length = 1005

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 121/533 (22%), Positives = 222/533 (41%), Gaps = 26/533 (4%)

Query: 298  ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKS 356
                YL  R         +E +  T   +       F +     + + NP+   +   + 
Sbjct: 480  AQSSYLRSRELVKAMNELNESKIQTEVLLHSMGEGVFGLNKKKKVAFVNPAGEHMVGMRQ 539

Query: 357  VDDIEIAGG-LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
             D +      L  L+ + +   +     +     D      +  L         S  + F
Sbjct: 540  EDVVGKPIQELFHLMKSDETPYHIKDSAIYKVFEDGRMHTVNNELF--CRKDGTSFNVEF 597

Query: 416  IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
                   +         +  +  +    + +++    +L +I++  +  I + + +G  L
Sbjct: 598  TCGPLRRED-TIEGVVLVFRDITNRIRAEAEIKETQRRLRAIIDNATSVIYVKDLKGRYL 656

Query: 476  STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
              N+    LF    E+++ K       ++     +    ++L      T E+       E
Sbjct: 657  IANKQYLDLFHLTNEEVIGKTDYEIFSKDVADKFSLNDNDVLEKGKAVTYEETAPLDDGE 716

Query: 536  EKLLSLRIIIKKLPFSS-CYSLTMHDISEWKQEK--------------NKLSHAKKIAEK 580
               +S++  +     +         DI+E K+++                L  A+K AE+
Sbjct: 717  HTYVSVKFPLYDAEDNIYATCGISTDITERKEQELKQLEFLKQIEQSNQDLEIARKKAEE 776

Query: 581  ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
             +  KS FLA +SHEIRTPL  +IG + ++ N       +    +YAN ID SG ++L+I
Sbjct: 777  ANIAKSTFLANMSHEIRTPLNGVIGMTSLLLNTPL----DKSQEKYANRIDLSGKVLLEI 832

Query: 641  VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILA 699
            +ND+LD SKIE+G++NL   P +L+E V E   L+Q  A EK + +  S+A++ P  ++ 
Sbjct: 833  INDILDFSKIEAGELNLEKIPCNLEEIVEEVGELMQPKAEEKGLNLEISYAHDTPKHLIG 892

Query: 700  DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKP 759
            D   ++Q+ +N+ SNAI FT  G  + I  ++     + + V DTG+G+   +     + 
Sbjct: 893  DPTRIRQVIMNLTSNAIKFTQEGS-VAIKVSNPKKAFIRVEVTDTGIGIPQEKKMHIFEK 951

Query: 760  FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
            F Q   S   +  GTGLGL + K +++   GK    S   KG+      PL +
Sbjct: 952  FSQADVSTTRKFGGTGLGLAICKQLIEIMEGKIGCESIENKGSTFWFEIPLQN 1004



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/192 (11%), Positives = 57/192 (29%), Gaps = 9/192 (4%)

Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
            A L     +   +  + F  F     F              +      ++    +Q   
Sbjct: 447 RAELLAEHRSVLPAFTLFFGVFLAIVVFFGVYFAQSSYLRSRELVKAMNELNESKIQTEV 506

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE-----QNTPSVMNH 511
           +L +  +G+  +N++  +   N A   + G   ED++ KP           +    + + 
Sbjct: 507 LLHSMGEGVFGLNKKKKVAFVNPAGEHMVGMRQEDVVGKPIQELFHLMKSDETPYHIKDS 566

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEK 568
            + ++       T+        K+    ++      L          L   DI+   + +
Sbjct: 567 AIYKVFEDGRMHTVNNELFCR-KDGTSFNVEFTCGPLRREDTIEGVVLVFRDITNRIRAE 625

Query: 569 NKLSHAKKIAEK 580
            ++   ++    
Sbjct: 626 AEIKETQRRLRA 637



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/306 (9%), Positives = 83/306 (27%), Gaps = 19/306 (6%)

Query: 94  YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID------PNNHIGDLLKRQNTWY-GK 146
            +  ++      +G     ++G  + ++  ++  D       ++ I  + +         
Sbjct: 523 KVAFVNPAGEHMVGMRQEDVVGKPIQELFHLMKSDETPYHIKDSAIYKVFEDGRMHTVNN 582

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                 +GT+    ++    P+   +    G     +           A  K   ++   
Sbjct: 583 ELFCRKDGTSFN--VEFTCGPLRRED-TIEGV--VLVFRDITNRIRAEAEIKETQRRLRA 637

Query: 207 LHEIKKGHSSVEKEKYDIFSQQS---PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
           + +       V+  K              HL  +  +         KD   K        
Sbjct: 638 IIDNATSVIYVKDLKGRYLIANKQYLDLFHLTNEEVIGKTDYEIFSKDVADKFSLNDNDV 697

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
            E+      E+   ++  ++T       L +     +         +     +  +    
Sbjct: 698 LEKGKAVTYEETAPLDDGEHTYVSVKFPLYDAEDNIYATCGISTDITERKEQELKQLEFL 757

Query: 324 ETVDKCPIPFFVYSHGNLFYANPS---FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
           + +++      +        AN +   FL    ++    +    G+++LL    L  +  
Sbjct: 758 KQIEQSNQDLEIARK-KAEEANIAKSTFLANMSHEIRTPLNGVIGMTSLLLNTPLDKSQE 816

Query: 381 IKPVML 386
                +
Sbjct: 817 KYANRI 822



 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/152 (12%), Positives = 46/152 (30%), Gaps = 10/152 (6%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTT 148
           D  G     +++          ++IG    ++      D  + +  D+L++      + T
Sbjct: 650 DLKGRYLIANKQYLDLFHLTNEEVIGKTDYEIFSKDVADKFSLNDNDVLEKGKAVTYEET 709

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +G + YV +     P+Y        +   GI        +           F    
Sbjct: 710 APLDDGEHTYVSVKF---PLYDAEDNI--YATCGISTDITERKEQELKQLE----FLKQI 760

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV 240
           E       + ++K +  +         M +++
Sbjct: 761 EQSNQDLEIARKKAEEANIAKSTFLANMSHEI 792


>gi|153870360|ref|ZP_01999777.1| sensory box histidine kinase/response regulator [Beggiatoa sp. PS]
 gi|152073175|gb|EDN70224.1| sensory box histidine kinase/response regulator [Beggiatoa sp. PS]
          Length = 1105

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 127/740 (17%), Positives = 263/740 (35%), Gaps = 48/740 (6%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D  G + +I++   +  G    + + +    V    +           +       ++  
Sbjct: 133 DLEGKIVDINQSAIQMYGYSKAEFVTLHANQVICPEYQSRLKEFIQTAQSGKIASAQSVD 192

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
              +GT  Y  I+   L    +           I+             K  +++F  L E
Sbjct: 193 LRKDGTFFYTEINGTTLEYNGQKHLL------AIIRDVTERKRAENALKESEERFRSLVE 246

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD-----DVLKTEKYPLLTS 264
                  V   +                ++   L     + +     + LKT    +   
Sbjct: 247 QAADAIFVHDLEGRFVDVNQSACKSVGYSRSELLNLSVTNLEKGVSLEQLKTVWQHIKVG 306

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
           E  S+  +         +   +   G ++ +  +    L+     +     +E       
Sbjct: 307 E--SVTLEGTHRHKTGKKIPVEVRLGLIKWDGTQYI--LAAARDITERKRVEEILKKRAI 362

Query: 325 TVDKCPIPFFVYSHGNLF--------YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
                     + + G+            +     +      +           +      
Sbjct: 363 EFKMAQE---IANLGSYTINLLTSEQEWSDQIFHILGIDRKEVSPSHENFMQFVPPEDKE 419

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
                                A    I+ + E    +      + N     +   G   +
Sbjct: 420 LLERESQAAFT----GQKTLDAYYRIIRKDGE-VRFLHTGGIVEYNDKKIPVRMYGFTQD 474

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             + +  + K+ I+      ILE  ++G+ +    G++L TNR ++++FGY   +++ + 
Sbjct: 475 ITERKRAEEKLLIQAK----ILENMAEGVNLTTESGLMLLTNRLLTRMFGYDENELIGQH 530

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL--SLRIIIKKLPFSSCY 554
            ++    +    M      I  L  ++  E       K+         I    +     +
Sbjct: 531 VSILNSLSPEENMVFVNHVIADLQTKEIWEGEFNNQKKDGTHFISYAYISALDISGQHYF 590

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E KQ +  L  AK+ AE  +  KS+FLA +SHEIRTP+ A++GFSE++    
Sbjct: 591 VTVQEDITERKQAEIALQQAKEQAESANRAKSEFLATMSHEIRTPMNAVLGFSELLSEL- 649

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
              + N +   Y + I  +G  +L +++D+LD++KIE+G++++ +E V+      E   +
Sbjct: 650 ---VTNKQQKSYLDSIKMAGKTLLTLIDDILDLAKIEAGRLDIQYEAVNPYNIFEELKQI 706

Query: 675 VQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
             L   +K++        N+P  ++ D   ++Q+ LN++ NA+ FT  G  I +      
Sbjct: 707 FVLKIVDKQLDFIVDIDENLPLALILDETRLRQVLLNLIGNAVKFTEKG-YIKLGAQKID 765

Query: 734 NEE-----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
             +     +++ V DTG+G+   + E   + F Q       +  GTGLGL + + +V+  
Sbjct: 766 KMDKSKIDLLISVEDTGIGIPLAQQEMIFEAFRQQDGQSNRKYGGTGLGLAITRRLVEMM 825

Query: 789 MGKFYIFSTPAKGTLIEIIF 808
            G   +  T  KG++  I  
Sbjct: 826 NGDISVTGTVGKGSIFNISL 845



 Score =  118 bits (296), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 33/269 (12%), Positives = 80/269 (29%), Gaps = 18/269 (6%)

Query: 334 FVYSHG----NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389
            V+          + +        Y   D +E    +  L    +             + 
Sbjct: 1   MVWEADAKTFQFTFVSQQAEPFLGYPCEDWLEPTFWVEHLHPEDRTWAPGFCMEATFKKQ 60

Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449
           D            I  +         +     N  P  +   G+  +    +  ++ ++ 
Sbjct: 61  D-----HEFEYRMITADNRIIWLRDLVSVIIENDQP--VKICGVMLDITQWKQAEQTLKE 113

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
               L +I  +T+D   I + EG I+  N++  +++GY   + +       +     S +
Sbjct: 114 NEQNLQAIFNSTTDAFIIADLEGKIVDINQSAIQMYGYSKAEFVTLHANQVICPEYQSRL 173

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI--IIKKLPFSSCYSLTMHDISEWKQE 567
             ++    S  +            K+       I     +          + D++E K+ 
Sbjct: 174 KEFIQTAQSGKIASAQSVDLR---KDGTFFYTEINGTTLEYNGQKHLLAIIRDVTERKRA 230

Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEI 596
           +N L  +++         +D  A   H++
Sbjct: 231 ENALKESEERFRSLVEQAAD--AIFVHDL 257


>gi|117922447|ref|YP_871639.1| putative PAS/PAC sensor protein [Shewanella sp. ANA-3]
 gi|117614779|gb|ABK50233.1| putative PAS/PAC sensor protein [Shewanella sp. ANA-3]
          Length = 1626

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 121/779 (15%), Positives = 268/779 (34%), Gaps = 62/779 (7%)

Query: 90   DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL--HIDPNNHIGDLLKRQNTWYGKT 147
            D  G +   ++   +  G    + +G+   ++       ++      ++L  +      +
Sbjct: 363  DLAGNITSWNQGAERLFGFTEPETLGLPSSELIVPPSIVLEEQALFAEVLAGKTVLNRVS 422

Query: 148  TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA----LGKRLDKK 203
                 +G+NL       ALPIY  + +  G      +       D       L   L+++
Sbjct: 423  RHQRADGSNLSTSTT--ALPIYDEHGDIVGLSQ--TIRDITAQQDAERHILNLNASLERQ 478

Query: 204  FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY-----AHKDDVLKTEK 258
             +      +      +   D  +QQ       +   +  + E++       +++++    
Sbjct: 479  VAKRTHALQQALLENQALLDTINQQLHYSVTDLDGVILDVNEHFCLISGYAREELVGKTH 538

Query: 259  YPLLTSEESSLPEQEDF---------------HTINLNQYTKKQYFGTLQNNSKESFEYL 303
              L + E  +   +  +                  +          G++ +   +   ++
Sbjct: 539  AVLKSGEHDAAFWKAMWEQIKAGKSWHGEICNRGKDQQLKWFDTVIGSVFDEHGQVERFV 598

Query: 304  SHRNHPSLSAYFDEGENLTPETVDKCPIP------FFVYSHGNLFYANPSFLLLTKYKSV 357
            + +   +        +N     +                  G +   N     +  Y + 
Sbjct: 599  ALQTDITERKLAQIEKNRIATLLTNVLDAASEMTIIAADPQGIITIFNRGAERMLWYSAE 658

Query: 358  DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR--------TCIAASARLHTIQWNREN 409
            + I         +     +    +      +               +  R  T      +
Sbjct: 659  EIIGKTTPAPFHIADEIAARAAELSVEYGQKIQGFDTFVHKAREEGSETRTWTYVRKDGS 718

Query: 410  SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469
             L ++           E +   GI  +       +  +      L    E    GI   N
Sbjct: 719  QLPISLSVTAMRGNDGEILGYLGIGVDISQIVAQQEALLTASNHLSKAAEVAKLGIWTWN 778

Query: 470  REGIILSTNRAVSKLFGYPV----EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
                 L  N  +  ++  P     + +  + + + +  +        L   +  D     
Sbjct: 779  LLDNSLQWNDRMFAMYDQPESLKQQGLSYEHWRMRVHPDDVIEAEETLKRAVEHDEPYEP 838

Query: 526  EKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
                L +  E + +     I++              DI+  +Q +  L +AK+ A+  ++
Sbjct: 839  IFRILTTDGEVRYVQAAAKIERDRQGHVIRVIGINIDITAQRQLEKTLRNAKQEADTANA 898

Query: 584  HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
             KS FLA +SHEIRTP+ A++G  ++++          +   Y      +   +L ++ND
Sbjct: 899  AKSAFLANMSHEIRTPMNAVLGMLQLMQYTALSV----QQQGYVTKAQTAAKSLLGLLND 954

Query: 644  LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLR 702
            +LD SKI++GK+ L   P S++  + +   ++        + +     + +P  +LAD  
Sbjct: 955  ILDFSKIDAGKLKLDLHPCSIELLMRDLAVVLSANHGNSDVEVMFDLDSALPAWLLADQL 1014

Query: 703  SVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDTGVGMTNYELEKAMK 758
             ++QI +N+  NA+ FTP G Q+I+      +E     V   + D+G+G++  ++E+   
Sbjct: 1015 RLQQILINLAGNALKFTPHG-QVIVGLECLRHEAESVTVQFSIVDSGIGISEEQIERIFT 1073

Query: 759  PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI--IFPLYDTSH 815
             F Q  +S   R  GTGLGL ++K +V+   G+  + S    G+       FP+ +   
Sbjct: 1074 GFEQAESSTSRRFGGTGLGLAISKRLVELMGGQLQVTSKVGVGSRFWFDLTFPVMEVEA 1132



 Score = 97.8 bits (242), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 50/499 (10%), Positives = 131/499 (26%), Gaps = 45/499 (9%)

Query: 105 TIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEG---------- 154
            +G +   ++  ++  ++              +    T       + + G          
Sbjct: 19  LVGLFFSAVLAWQVSRINAQTISQALEERAQQISENVTNRITLYQYGLRGARGMILTAGE 78

Query: 155 TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214
            ++   +          + EF G RGFG +   RV  +  A      K         +  
Sbjct: 79  DHISRSMFQNYSLTRDVDEEFPGARGFGFIR--RVPKENEAQFLARVKSMDWPDFHIRQL 136

Query: 215 SSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQED 274
           +  E EKY I   +    +        +   +     D         +++  + +     
Sbjct: 137 NPNEGEKYLIEYIEPLDRNKAAVGLDIASESHRKEAADRALLSGAVQISAPITLVQATGK 196

Query: 275 FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF 334
                L      +     +   +   +       P ++     G +L  +          
Sbjct: 197 PLQSFLILLPVYRSGTVPKTPEERLAQGFGWSYAPLVTTEILTGLSLHQKMTKLM----- 251

Query: 335 VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394
                                 + D+          +      +                
Sbjct: 252 ----------------------LSDVTDEQQPINFFETHANDLSELSDYSYKSTKTIFGR 289

Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
                +       ++           +      +    I    +  +  ++ +  +  + 
Sbjct: 290 HWQFEVIAYPAFIKSLHLNKPSLVLFSGCLFSLLLAALIAMWSLSLQRKQQVLAEQARR- 348

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
            S+LE + DGI   +  G I S N+   +LFG+   + L  P +  +   +  +    L 
Sbjct: 349 ASMLEHSLDGIISYDLAGNITSWNQGAERLFGFTEPETLGLPSSELIVPPSIVLEEQALF 408

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNK 570
             +       L +++     +   LS       +       +    T+ DI+  +  +  
Sbjct: 409 AEVLAGKT-VLNRVSRHQRADGSNLSTSTTALPIYDEHGDIVGLSQTIRDITAQQDAERH 467

Query: 571 LSHAKKIAEKESSHKSDFL 589
           + +     E++ + ++  L
Sbjct: 468 ILNLNASLERQVAKRTHAL 486



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 36/391 (9%), Positives = 102/391 (26%), Gaps = 33/391 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGKT 147
            D  G + +++E      G    +++G     +    H       + + +K   +W+G+ 
Sbjct: 509 TDLDGVILDVNEHFCLISGYAREELVGKTHAVLKSGEHDAAFWKAMWEQIKAGKSWHGEI 568

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                +    +    + +  ++  + +    R   +          +    R+    +++
Sbjct: 569 CNRGKDQQLKWFDTVIGS--VFDEHGQVE--RFVALQTDITERKLAQIEKNRIATLLTNV 624

Query: 208 HEIKKGHSSVEKEKYDIFSQ----QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
            +     + +  +   I +              +  +   T    H  D +      L  
Sbjct: 625 LDAASEMTIIAADPQGIITIFNRGAERMLWYSAEEIIGKTTPAPFHIADEIAARAAELSV 684

Query: 264 SEESSLPEQEDFHT----------------INLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
                +   + F                   + +Q         ++ N  E   YL    
Sbjct: 685 EYGQKIQGFDTFVHKAREEGSETRTWTYVRKDGSQLPISLSVTAMRGNDGEILGYLGIGV 744

Query: 308 HPSLSAYFDE----GENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEI 362
             S      E      N   +  +   +  + ++   N    N     +  Y   + ++ 
Sbjct: 745 DISQIVAQQEALLTASNHLSKAAEVAKLGIWTWNLLDNSLQWNDRMFAM--YDQPESLKQ 802

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
            G            D+       L R+             +  + E    +      + +
Sbjct: 803 QGLSYEHWRMRVHPDDVIEAEETLKRAVEHDEPYEPIFRILTTDGE-VRYVQAAAKIERD 861

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
           +    +   GI  +    R  ++ +     +
Sbjct: 862 RQGHVIRVIGINIDITAQRQLEKTLRNAKQE 892


>gi|75908636|ref|YP_322932.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
 gi|75702361|gb|ABA22037.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
          Length = 933

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 108/659 (16%), Positives = 238/659 (36%), Gaps = 68/659 (10%)

Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHK 250
             L     K    +                I +  +          +  +   T    H 
Sbjct: 38  VQLEATNQKLQQAILNSANYTIISTTPDGIILTFNAAAQRWLGYTAEEVIGKTTPEIVHD 97

Query: 251 DDVLKTEKYPLLTSEE-------------SSLPEQEDFHTI----NLNQYTKKQYFGTLQ 293
            + +      L                  + L + E+        + +++        L 
Sbjct: 98  KNEVVKVAQELSQELGVTIEPGFEVFVAKARLGQVEEREWTYIRKDGSRFPVLLSVTPLY 157

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGEN----LTPETVDKCPIPFFVYSH-GNLFYANPSF 348
           +  +    +L   +  +     +                 P+  F     G   +AN   
Sbjct: 158 DAEENITGFLGIGSDITARKLAEAALRESEYRYATLAQTAPVGIFRNDASGRCIFANERA 217

Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
             L     ++DI   G + +L    +L     ++             A  R    +    
Sbjct: 218 CNLIG-SPLEDILGEGWVQSLHPDDRLR---IVREWNQAIKQNLPFKAEYRF---RHPNN 270

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468
               +      +     E     G   +  D +  + ++      L   LE+  +GI+ +
Sbjct: 271 VINWVISQAIPERGSDGEVTGYIGTMTDINDRKRAEEELL----HLSQALESAVEGISQL 326

Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528
           + +G  +  N A +++ GY  E+++   +T  +  +    M     ++L       +E  
Sbjct: 327 DTQGHYIKVNPAYAQITGYTPEEMIGMEWTSTVHPDDQEKMMAAYRQMLKNGK---VEME 383

Query: 529 TLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
                K+      ++++ K          +   M DIS+ ++ +                
Sbjct: 384 ARAMRKDGSAFYKQVVMVKAYNQQQECIGHYCFMKDISDRREVE--------------RL 429

Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
           K +F++ VSHE+RTPLT+I G  + +   +  P G+       N    + + ++ ++ND+
Sbjct: 430 KDEFVSVVSHELRTPLTSISGALD-LLASKVVPAGSEDAQRMLNIAANNTDRLVRLINDI 488

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704
           LDI +IESGK+ +  +  +  + +++++ +++  A +  I +  + +     + AD   +
Sbjct: 489 LDIERIESGKIQITPQACNAADLMTQSVEVMEELAEQGGIQL--AMSPLSAHLWADPDRI 546

Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEE--------VILRVRDTGVGMTNYELEKA 756
            Q+  N++SNAI F+P+G  + ++       E        ++  V+D G G+   +LE  
Sbjct: 547 IQVFTNLISNAIKFSPAGATVWVTAKIPEKSELEKFPNPVILFEVKDQGRGIPADKLESI 606

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            + FGQ+  S   +  GTGLGL + ++++  + G+ +  ST  +G+      P++    
Sbjct: 607 FERFGQVDASDSRQKGGTGLGLAICRSILQHHGGRIWAESTLGEGSTFFFTLPIFPEEQ 665



 Score =  108 bits (271), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 46/399 (11%), Positives = 110/399 (27%), Gaps = 40/399 (10%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH----------------IDPNNHIG 134
             G +   +    + +G  A ++IG    ++    +                I+P   + 
Sbjct: 64  PDGIILTFNAAAQRWLGYTAEEVIGKTTPEIVHDKNEVVKVAQELSQELGVTIEPGFEVF 123

Query: 135 DLLKR-QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193
               R       + T    +G+    P+ L+  P+Y      +GF G G           
Sbjct: 124 VAKARLGQVEEREWTYIRKDGS--RFPVLLSVTPLYDAEENITGFLGIGS--DITARKLA 179

Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHK 250
            A  +  + +++ L +                             +++ +        H 
Sbjct: 180 EAALRESEYRYATLAQTAPVGIFRNDASGRCIFANERACNLIGSPLEDILGEGWVQSLHP 239

Query: 251 DDVLK-TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
           DD L+   ++     +      +  F   N             + +  E   Y+      
Sbjct: 240 DDRLRIVREWNQAIKQNLPFKAEYRFRHPNNVINWVISQAIPERGSDGEVTGYIGTMTDI 299

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
           +     +E      + ++            G+    NP++  +T Y   + I      ST
Sbjct: 300 NDRKRAEEELLHLSQALESAVEGISQLDTQGHYIKVNPAYAQITGYTPEEMI-GMEWTST 358

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
           +    +     A + ++                 ++ +         +      Q     
Sbjct: 359 VHPDDQEKMMAAYRQMLKNGK------VEMEARAMRKDGSAFYKQVVMVKAYNQQQECIG 412

Query: 429 PQNGIEPEDVDTRINKRKMEIE-----VMQLCSILEATS 462
               ++ +  D R  +R ++ E       +L + L + S
Sbjct: 413 HYCFMK-DISDRREVER-LKDEFVSVVSHELRTPLTSIS 449



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/198 (9%), Positives = 48/198 (24%), Gaps = 8/198 (4%)

Query: 65  TNYLDSENTFVFDPIPRTVRF-TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD 123
                 E+ + +  + +T     +  DA G     +E     IG+    ++G        
Sbjct: 179 AEAALRESEYRYATLAQTAPVGIFRNDASGRCIFANERACNLIGSPLEDILGEGWVQSLH 238

Query: 124 ILH-IDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFG 182
               +         +K+   +  +          +   +   A+P    + E +G+   G
Sbjct: 239 PDDRLRIVREWNQAIKQNLPFKAEYRFRHPNN--VINWVISQAIPERGSDGEVTGY--IG 294

Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS 242
            +               L +      E      +     Y   +            ++  
Sbjct: 295 TMTDINDRKRAEEELLHLSQALESAVEGISQLDTQGH--YIKVNPAYAQITGYTPEEMIG 352

Query: 243 LTEYYAHKDDVLKTEKYP 260
           +        D  +     
Sbjct: 353 MEWTSTVHPDDQEKMMAA 370



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/242 (11%), Positives = 71/242 (29%), Gaps = 13/242 (5%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
            +D  G+  +++    +  G    +MIGM           +        + +      + 
Sbjct: 325 QLDTQGHYIKVNPAYAQITGYTPEEMIGMEWTSTVHPDDQEKMMAAYRQMLKNGKVEMEA 384

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                +G+  Y  + +     Y++ +E  G   F    +  + +       + +      
Sbjct: 385 RAMRKDGSAFYKQVVMVKA--YNQQQECIGHYCF----MKDISDRREVERLKDEFVSVVS 438

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
           HE++   +S+      + S+  P            +    A+  D L      +L  E  
Sbjct: 439 HELRTPLTSISGALDLLASKVVPAG----SEDAQRMLNIAANNTDRLVRLINDILDIERI 494

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
              + +             Q    ++  +++    L+      LSA+     +   +   
Sbjct: 495 ESGKIQITPQACNAADLMTQSVEVMEELAEQGGIQLAMSP---LSAHLWADPDRIIQVFT 551

Query: 328 KC 329
             
Sbjct: 552 NL 553


>gi|209523365|ref|ZP_03271920.1| multi-sensor signal transduction histidine kinase [Arthrospira maxima
            CS-328]
 gi|209496107|gb|EDZ96407.1| multi-sensor signal transduction histidine kinase [Arthrospira maxima
            CS-328]
          Length = 1010

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 119/774 (15%), Positives = 268/774 (34%), Gaps = 55/774 (7%)

Query: 56   DQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIG 115
            D +    +    + SE  F    I  T+   W ID+      +++++   +G    ++  
Sbjct: 264  DISDRQKTEAALIKSEAKFR-TIIETTLEGVWMIDSDNMTTCVNQQMADMLGYTQEEITQ 322

Query: 116  MRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREF 175
              L    D        +     +       +       G    +   L+  PI+  + ++
Sbjct: 323  SSLFKFVDEQDYPIVENYLQRRREGIAEQHEFKWKRKNGDI--LWTILSTNPIFD-DGKY 379

Query: 176  SGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSV----------EKEKYDIF 225
            +G     I+              + +K+F  +         V              Y+  
Sbjct: 380  AGC--CAIITDINYRKKTEVALIKSEKRFQEIASTISQFFFVKCAHSGQYIYLSPAYEKI 437

Query: 226  SQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTK 285
              ++     +  +   +          +   EK      + + +  +      +      
Sbjct: 438  WGRTCESLYQNPDSWLNTIYPEDRGAVINYQEKQH----QNNLVKREYRIIRNDGVIRWV 493

Query: 286  KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD----KCPIPFFVYSHGN- 340
             +    + N+      Y+      S     +     + E +       P  F +Y     
Sbjct: 494  YEEVNIIYNDDGSPLRYIGFAEDISDRKEAEIALAESEELLRIAVNHAPDVFVIYDSDRR 553

Query: 341  LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400
            L + N   L LT +     I        L              + L       ++     
Sbjct: 554  LKFVNRRVLELTSWSEETFIGRRD--EELFL-----PEATSHYLPLLEKTIQTLSIQMGE 606

Query: 401  HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
             TI    +    +        ++  +     G+  +    +  ++K+        +  E 
Sbjct: 607  ATITLPNQPPKTLIVKYLPLLDKQGKLSQILGLTFDITHYKQAEQKLRDSEELFRTAFED 666

Query: 461  TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520
             + G+A+++ +G  L  NR + ++ GY   ++L+                  + ++L   
Sbjct: 667  AAIGMALLSPQGNCLKVNRCICEMLGYQEAELLQLQCKDITHPEDYEQEVKSIKKLL-DG 725

Query: 521  LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKK 576
              Q          K+  ++ + + +  +         +     +ISE +  +        
Sbjct: 726  QVQYYYVEKRYLHKQGYVIWVLLSMSVVRNIDGVPLYFIAQAQNISERRAVE-------- 777

Query: 577  IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
                    K++F++ VSHE+RTPLTAI G   ++ +  +       + ++          
Sbjct: 778  ------QMKNEFISVVSHELRTPLTAIQGSLGLLSSGLYDHKPQE-FHKFIQIALLETER 830

Query: 637  VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696
            ++ +VND+LDI ++ SG++    E  S  + +++ +  +Q  A++  I +         +
Sbjct: 831  LVRLVNDILDIERLNSGQVEFQMEACSAQDLMTQVVKSLQAIAHQDSITL--EILPTSLQ 888

Query: 697  ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKA 756
            + A+  ++ Q   N++ NAI F+P    + +S  +  ++ V+ +VRD G G+   +LE  
Sbjct: 889  LWAERDAMLQTLTNLVGNAIKFSPPHTTVTLS-AYPQDDMVLFQVRDQGRGIPPEQLETI 947

Query: 757  MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
               F Q+  S   +  GTGLGL + ++++  + GK ++ S  AKG+      P+
Sbjct: 948  FSRFQQVDASDSRQKGGTGLGLSICQSIIQQHGGKIWVESQLAKGSTFYFTIPM 1001



 Score =  127 bits (318), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 34/335 (10%), Positives = 103/335 (30%), Gaps = 11/335 (3%)

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
               T              + +     ++  G ++     S       +H  ++      
Sbjct: 90  AESTTIFREVRRLNLRVADVLIYPLDLEEAQGRIEMQLLSSHRGDDFTHHSGITQQLQSV 149

Query: 319 ENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
            +     +D  P+   ++     +   +     +  +   + +  +     L+       
Sbjct: 150 NHQLKTLIDNSPMGTIIWDRKLRVIQWSKQAEEIFGWSESEVLGKSMNEWKLIFEEDSDR 209

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
            N     +    ++  I  +      + +        +      ++  +         + 
Sbjct: 210 INRETQTIFANQEKRRICIN---RNYRKDGSVIYCEWYNSNF-YDESGKLNMLLSWVQDI 265

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
            D +  +  +     +  +I+E T +G+ +I+ + +    N+ ++ + GY  E+I +   
Sbjct: 266 SDRQKTEAALIKSEAKFRTIIETTLEGVWMIDSDNMTTCVNQQMADMLGYTQEEITQSSL 325

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CY 554
             F+++    ++ +YL         Q          K   +L   +    +         
Sbjct: 326 FKFVDEQDYPIVENYLQRRREGIAEQ---HEFKWKRKNGDILWTILSTNPIFDDGKYAGC 382

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
              + DI+  K+ +  L  ++K  ++ +S  S F 
Sbjct: 383 CAIITDINYRKKTEVALIKSEKRFQEIASTISQFF 417



 Score =  123 bits (310), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 61/511 (11%), Positives = 137/511 (26%), Gaps = 28/511 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCD--VSDILHIDPNNHIGDLLKRQNTW 143
            W  D    + + S++  +  G    +++G  + +  +      D  N     +      
Sbjct: 166 IW--DRKLRVIQWSKQAEEIFGWSESEVLGKSMNEWKLIFEEDSDRINRETQTIFANQEK 223

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                          +  +      Y  + + +    +  V          A   + + K
Sbjct: 224 RRICINRNYRKDGSVIYCEWYNSNFYDESGKLNMLLSW--VQDISDRQKTEAALIKSEAK 281

Query: 204 FSHLHE-IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
           F  + E   +G   ++ +       Q     L    +  + +  +   D+         L
Sbjct: 282 FRTIIETTLEGVWMIDSDNMTTCVNQQMADMLGYTQEEITQSSLFKFVDEQDYPIVENYL 341

Query: 263 TSEESSLPEQEDFHT--INLNQYTKKQYFGTLQNNSKESFE---YLSHRNHPSLSAYFDE 317
                 + EQ +F     N +          + ++ K +                    +
Sbjct: 342 QRRREGIAEQHEFKWKRKNGDILWTILSTNPIFDDGKYAGCCAIITDINYRKKTEVALIK 401

Query: 318 GENLTPETVDKCPIPFFV--YSHGNLFYANPSFLLLTKYKSVDDIEIAG-GLSTLLDAPK 374
            E    E        FFV     G   Y +P++  +         +     L+T+    +
Sbjct: 402 SEKRFQEIASTISQFFFVKCAHSGQYIYLSPAYEKIWGRTCESLYQNPDSWLNTIYPEDR 461

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
                    V+ Y+  +       R + I  N      +        N     +   G  
Sbjct: 462 -------GAVINYQEKQHQNNLVKREYRIIRNDGVIRWVYEEVNIIYNDDGSPLRYIGFA 514

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
            +  D +  +  +      L   +    D   I + +  +   NR V +L  +  E  + 
Sbjct: 515 EDISDRKEAEIALAESEELLRIAVNHAPDVFVIYDSDRRLKFVNRRVLELTSWSEETFIG 574

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC- 553
           +           S     L + +     Q  E         +   +L +    L      
Sbjct: 575 RRDEELFLPEATSHYLPLLEKTIQTLSIQMGEATITL--PNQPPKTLIVKYLPLLDKQGK 632

Query: 554 ---YSLTMHDISEWKQEKNKLSHAKKIAEKE 581
                    DI+ +KQ + KL  ++++    
Sbjct: 633 LSQILGLTFDITHYKQAEQKLRDSEELFRTA 663


>gi|298251004|ref|ZP_06974808.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
            racemifer DSM 44963]
 gi|297549008|gb|EFH82875.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
            racemifer DSM 44963]
          Length = 1352

 Score =  399 bits (1025), Expect = e-108,   Method: Composition-based stats.
 Identities = 105/771 (13%), Positives = 246/771 (31%), Gaps = 46/771 (5%)

Query: 55   TDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI 114
            TD +++  +      SE  +         +  W    +G  + +++     +G     M 
Sbjct: 607  TDIDEQKQAEQRIKASEENWRVLAETVP-QMVWTTRPNGQHEYVNQRWCDYMGVTVEHMQ 665

Query: 115  GMRLC--DVSDILHIDPNNHIG-DLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSR 171
              R            +    +    L+    +  +      + T  Y      A+P+   
Sbjct: 666  SDRWAPLSFIHPDDREGTRALWLHALETGAMYEHEERFRNSQ-TGAYRWFLARAMPVRDG 724

Query: 172  NREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP- 230
              +    + FG               K  ++ +  L E         +    +       
Sbjct: 725  AGQI--LKWFGTSTDIEDQKRIEQQLKESEENWRVLAETVPQLVWTIQPDGRLDYCNQRY 782

Query: 231  -PPHLRMKNKVSSLTEYY---AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKK 286
                     ++              +     +  LL + E+   +         N     
Sbjct: 783  YDYIGASPEQLLGYGWSQFLHPDDAERTLALRRHLLETGEAYEIKYRLREGNTGNYRWFL 842

Query: 287  QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE----TVDKCPIPFFVYS-HGNL 341
                 +++ + +  ++             ++    + E      +  P    V    G  
Sbjct: 843  ARAMPVRDETGQILKWFGTSTDIEDQKRIEQQLKESEENWRVLAETVPQLVMVARSDGQH 902

Query: 342  FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD-RTCIAASARL 400
             Y N  +   T +           L   L      D    + +  +  +         RL
Sbjct: 903  EYVNQRWRDYTGFTVEQ---TQSDLWAYLQFIHPDDREGARALSQHAQETGAMYEHEERL 959

Query: 401  HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
               Q                 ++  + +   G   +  + +  +  +     +   ++ +
Sbjct: 960  RNSQT--GAYRWFLTRGVPVRDETGQIVKWFGTCTDIDEQKRTEEALRQSQKRASVLMNS 1017

Query: 461  TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK--PFTVFLEQNTPSVMNHYLTEILS 518
            +  GI +   +  ++  N    ++ GY  ED+  +   +         +       E+ +
Sbjct: 1018 SIIGIFVA-EDEQVVDANDTFLRMTGYTGEDLRERRMSWRHMTPPEYLARTQQAYEELAT 1076

Query: 519  LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578
                   EK  +        + +  ++ +       +  + D S  K+ + +        
Sbjct: 1077 QQSIIPYEKEYVCKDGSRLPVLVGAVVLQHHPFQGIAFVL-DNSARKELEQR-------- 1127

Query: 579  EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
                  K DF++  SHE+R PL A+   ++ +  +R     +         ++     + 
Sbjct: 1128 ------KDDFISMASHELRNPLAALKMQTQ-LVRKRLERQSHHEAATALAKVEGPVKRLE 1180

Query: 639  DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
             ++ +LLD+SKI++G++    E V LD  + E    +Q       I++R +   ++   +
Sbjct: 1181 RLIGELLDVSKIQAGRLEYLQETVDLDALLHEVADTMQQIQTTHTIVVRGAAPRSL---V 1237

Query: 699  ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
             D   + QI  N++SNAI ++P    + I  + +    V +RVRD G+G+   + +K  +
Sbjct: 1238 GDKDRLGQIFTNLISNAIKYSPGAETVEIDMSASPE-TVTIRVRDYGLGIPREQRDKIFE 1296

Query: 759  PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             F +    +Q    G G+GL +   ++  + G   + S   KG++  +  P
Sbjct: 1297 RFYRATGPKQKAIPGLGMGLYIVAEIIKRHGGTITVESEVGKGSIFTVTLP 1347



 Score =  187 bits (475), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 48/514 (9%), Positives = 122/514 (23%), Gaps = 31/514 (6%)

Query: 85   FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD-LLKRQNTW 143
            F W +   G  +  +    +  G  + +  G                      ++    +
Sbjct: 509  FVWIMHPDGSAEYANPRWCEYTGMTSQQYQGDGWLQAIHPDDQQRVLAGWQSAVQAGRPY 568

Query: 144  YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             G+        T  Y        P          +  FG               K  ++ 
Sbjct: 569  EGEQ-RLRNSTTGDYRWFLARGAPFKDAQGTILKY--FGTSTDIDEQKQAEQRIKASEEN 625

Query: 204  FSHLHEIKKGHSSVEKEKYDIFSQQSP-------PPHLRMKNKVSSLTEYYAHKDDVLKT 256
            +  L E         +                         ++ + L+  +    +  + 
Sbjct: 626  WRVLAETVPQMVWTTRPNGQHEYVNQRWCDYMGVTVEHMQSDRWAPLSFIHPDDREGTRA 685

Query: 257  EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
                 L +      E+   ++              +++ + +  ++             +
Sbjct: 686  LWLHALETGAMYEHEERFRNSQTGAYRWFLARAMPVRDGAGQILKWFGTSTDIEDQKRIE 745

Query: 317  EGENLTPE----TVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
            +    + E      +  P   + +   G L Y N  +           +    G S  L 
Sbjct: 746  QQLKESEENWRVLAETVPQLVWTIQPDGRLDYCNQRYYDYIGASPEQLLG--YGWSQFLH 803

Query: 372  APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
                    A++         T  A   +    + N  N            ++  + +   
Sbjct: 804  PDDAERTLALR----RHLLETGEAYEIKYRLREGNTGNYRWFLARAMPVRDETGQILKWF 859

Query: 432  GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
            G   +  D +  +++++        + E     + +   +G     N+      G+ VE 
Sbjct: 860  GTSTDIEDQKRIEQQLKESEENWRVLAETVPQLVMVARSDGQHEYVNQRWRDYTGFTVEQ 919

Query: 492  ILRKPFTVF--LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK-KL 548
                 +     +  +                     E        +       +     +
Sbjct: 920  TQSDLWAYLQFIHPDDREGARALSQHAQETGA--MYEHEERLRNSQTGAYRWFLTRGVPV 977

Query: 549  PFSSC----YSLTMHDISEWKQEKNKLSHAKKIA 578
               +     +  T  DI E K+ +  L  ++K A
Sbjct: 978  RDETGQIVKWFGTCTDIDEQKRTEEALRQSQKRA 1011



 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 49/514 (9%), Positives = 115/514 (22%), Gaps = 25/514 (4%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQNTW 143
             W     GY+   ++      G    +  G      +          +    ++    +
Sbjct: 269 LVWTGRPDGYVDSYNQRWRDYTGLTTEEAQGDGWMQCTHPEDRQRVLEVWQRAVETGEPY 328

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +  L     T  Y    + A P          +   G            A  + L   
Sbjct: 329 ETEQRLRH-GTTGEYRWFLMQATPYTDAQGTILKY--VGTCTDIHDKKRAEAELRALIDA 385

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
              L  I         E  +                   L   +        T     L 
Sbjct: 386 IPQLVWILG--PDGSSEYGNQRWCDYTNMSFEQYQGDGWLQAIHPDDYQHTLTLWRHALE 443

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
           + E    E    +               +++ + +  ++             +   +   
Sbjct: 444 TGEPFEIEYRLKNGKTGGYRWFLARALPVRDEAGQILKWFGTCTDIHEKKQIE---DDIR 500

Query: 324 ETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
             VD  P   ++ +  G+  YANP +   T   S    +  G L  +    +       +
Sbjct: 501 VLVDAIPQFVWIMHPDGSAEYANPRWCEYTGMTS-QQYQGDGWLQAIHPDDQQRVLAGWQ 559

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             +             RL                     +     +   G   +  + + 
Sbjct: 560 SAVQA---GRPYEGEQRLRNSTTGD--YRWFLARGAPFKDAQGTILKYFGTSTDIDEQKQ 614

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF-- 500
            +++++        + E     +      G     N+      G  VE +    +     
Sbjct: 615 AEQRIKASEENWRVLAETVPQMVWTTRPNGQHEYVNQRWCDYMGVTVEHMQSDRWAPLSF 674

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE-EKLLSLRIIIKKLPFSSC----YS 555
           +  +            L        E        +             +   +     + 
Sbjct: 675 IHPDDREGTRALWLHALETGA--MYEHEERFRNSQTGAYRWFLARAMPVRDGAGQILKWF 732

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
            T  DI + K+ + +L  +++     +      +
Sbjct: 733 GTSTDIEDQKRIEQQLKESEENWRVLAETVPQLV 766



 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 42/495 (8%), Positives = 110/495 (22%), Gaps = 40/495 (8%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNT-WYGKTT 148
           DA   +K ++       G+    ++G      +    +   +    + K + T    +  
Sbjct: 34  DAE-TIKYVNTSAQTMTGSSREALLGNSFWHGAPQ--LLSPSLYQAMRKTRQTQEPTEVE 90

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFR-GFGIVHVNRVDNDPRALGKRLDKKFSHL 207
            W          +     P         G    F  +             +        L
Sbjct: 91  YWSP---MTRNWLRAQLTP------TVEGLTLQFHQMRAPTPTPRQETFPQGERLCIDDL 141

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMK-NKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
             +      +  E   +     P    +++  +V                 +  L  +  
Sbjct: 142 DGLHTRIGILTPEGIVLDINAVPLDDAQVRREEVIGKPLAETPWWSFAPASQEQLRAAIA 201

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS----AYFDEGENLT 322
            +   +            ++    + ++          H  +  ++          E   
Sbjct: 202 RANAGETV--CFEALVRPREGMLLSFESVITPHLNADHHIEYLVIAGIDITARKRAERDI 259

Query: 323 PETVDKCPIPFFVYSHGNLFY-ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
              +D  P   +           N  +   T   + +  +  G +       +       
Sbjct: 260 HALIDAIPQLVWTGRPDGYVDSYNQRWRDYTGLTTEEA-QGDGWMQCTHPEDRQRVLEVW 318

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
           +     R+  T                             +     +   G   +  D +
Sbjct: 319 Q-----RAVETGEPYETEQRLRHGTTGEYRWFLMQATPYTDAQGTILKYVGTCTDIHDKK 373

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
             + +       L ++++A    + I+  +G     N+          E      +   +
Sbjct: 374 RAEAE-------LRALIDAIPQLVWILGPDGSSEYGNQRWCDYTNMSFEQYQGDGWLQAI 426

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLT 557
             +            L       +E       K             +   +     +  T
Sbjct: 427 HPDDYQHTLTLWRHALETGEPFEIEYRLKN-GKTGGYRWFLARALPVRDEAGQILKWFGT 485

Query: 558 MHDISEWKQEKNKLS 572
             DI E KQ ++ + 
Sbjct: 486 CTDIHEKKQIEDDIR 500



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/276 (13%), Positives = 72/276 (26%), Gaps = 24/276 (8%)

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIA 363
                                +   P   F V     + Y N S   +T       +  +
Sbjct: 1   MSKTKRTERLTPASSETLLHMLKTLPDALFLVNDAETIKYVNTSAQTMTGSSREALLGNS 60

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
                    P+L   +  + +   R  +             W+      +          
Sbjct: 61  FWHGA----PQLLSPSLYQAMRKTRQTQEPTEVE------YWSPMTRNWLRAQLTPTVEG 110

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI--LEATSDGIAIINREGIILSTNRAV 481
                 Q         T   +++   +  +L  I  L+     I I+  EGI+L  N   
Sbjct: 111 LTLQFHQM-----RAPTPTPRQETFPQGERL-CIDDLDGLHTRIGILTPEGIVLDINAVP 164

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR-QTLEKITLGSTKEEKLLS 540
                   E+++ KP       +        L   ++     +T+    L   +E  LLS
Sbjct: 165 LDDAQVRREEVIGKPLAETPWWSFAPASQEQLRAAIARANAGETVCFEALVRPREGMLLS 224

Query: 541 LRIIIKK----LPFSSCYSLTMHDISEWKQEKNKLS 572
              +I              +   DI+  K+ +  + 
Sbjct: 225 FESVITPHLNADHHIEYLVIAGIDITARKRAERDIH 260


>gi|256829208|ref|YP_003157936.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256578384|gb|ACU89520.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 1079

 Score =  399 bits (1024), Expect = e-108,   Method: Composition-based stats.
 Identities = 121/742 (16%), Positives = 251/742 (33%), Gaps = 49/742 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG--K 146
           +D +  + E +      +G    +++G+R  D            I +L    +      +
Sbjct: 211 VDQNHRIIEANRRFADMLGYTPAEVLGLRTWDYEAN---MTEGMIKELFSDFSQVNSVFE 267

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
           T     +G+   V +  A   I  R+                   +     ++ +K F  
Sbjct: 268 TRHRRKDGSIFDVEVTTAGASIDGRS------CVLAFSRDITTRKEAERQLRQSEKHFRA 321

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPP--------PHLRMKNKVSSLTEYYAHKDDVLKTEK 258
           L E+ +    +   +                  P LR      +LT    H D       
Sbjct: 322 LFELSRDGFILADAEGRFLDANKAYCDMTGYSLPELRALGDFYALTPEKWH-DWQRDEIW 380

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
             L  S ++ +  +E  H  + + +  +     + ++              S     +E 
Sbjct: 381 TRLFKSGDTGVYRKEYIHK-DGHVFPVELRDFAVHDDHGVVRYAWGIVRDISERVRTEER 439

Query: 319 ENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
                + V++ P    +    GN+ Y NP F  L+ Y   +      G +  +       
Sbjct: 440 MRSLMQMVEQSPACIVMTDPQGNIEYVNPKFTELSGYSFDEA----RGQNPRILGSGYKS 495

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
               + +              R    +    +    + +     +          I+ + 
Sbjct: 496 REEYQDLWRTIESGRQWRGEFRN---RHKDGSLYWESALIAPILDPDGRTTHYVAIKEDI 552

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
              R  + ++    +    I++     ++ I+++      N   S  F     +++    
Sbjct: 553 TKRRHTEEELRKRDINFKKIVDILPQLVSYIDKDLRYRFVNATYSSFF--SPGNLIGNTV 610

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYS 555
              + +        ++ ++                   E+ + + +I           Y 
Sbjct: 611 AEVIGEKAFEATRGHIEQVFQGKTVH-YGATLTYPEMGERFVDVYLIPDYSSHGVVDGYY 669

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
             ++D++  K+ ++ L  AK  AE  +  KS+FLA +SHEIRTPL  I+G  ++++    
Sbjct: 670 AILNDLTHLKRIEDSLRLAKDEAEAANKLKSEFLANMSHEIRTPLNGILGMLQLMQ---- 725

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
           G   +    E  +   +S   +  +++D+LDISKIE+ ++        + +       L 
Sbjct: 726 GSNLDAEQQECLHTAIKSSERLTRLLSDILDISKIEADRLIFREHAFDIMDVEKALTELF 785

Query: 676 QLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
                E  I         +P ++L D   + QI  N++ N++ F   G    +S   T  
Sbjct: 786 GQAVKEAGIAYDFRVDPGLPKQVLGDEARLVQILFNLVGNSLKFADKG---YVSVDITPL 842

Query: 735 E-------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
                    ++  V D+G+GM+        +PF Q   S   R +G GLGL + + +V  
Sbjct: 843 PFTAGAPLRLLFCVTDSGLGMSEQTQRDIFEPFIQSDGSYTRRHQGVGLGLTIVRKLVQR 902

Query: 788 NMGKFYIFSTPAKGTLIEIIFP 809
             G   + S   +GT + +  P
Sbjct: 903 MGGSLCLDSVSGQGTAVYVSLP 924



 Score =  130 bits (328), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 40/415 (9%), Positives = 99/415 (23%), Gaps = 43/415 (10%)

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244
            V R          R D      +      S                    + N +    
Sbjct: 61  QVIRGSRAGNENCMRSDALLGAYNPSGPNVSRCMSGGLWDAGVSITVGGRHVANWLIGQV 120

Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
                 ++      Y      +     +       + +   ++    L   +    E   
Sbjct: 121 RSSLADEEA--MLGYAKTIGADPQEYREAMKEVPFMEEAQFRRVADALFVIANSLSEKAY 178

Query: 305 HRNHPSLSAYFDEGENLTPETV--DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIE- 361
            +          +  +   E +          V  +  +  AN  F  +  Y   + +  
Sbjct: 179 QQTMLLEEKRERQKMDAMREMLMDRSLDAIVVVDQNHRIIEANRRFADMLGYTPAEVLGL 238

Query: 362 ---------IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
                      G +  L      S  N++      R D +             +  +   
Sbjct: 239 RTWDYEANMTEGMIKELF--SDFSQVNSVFETRHRRKDGSIFDVEVTTAGASIDGRSC-- 294

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG 472
                                  +    +  +R++        ++ E + DG  + + EG
Sbjct: 295 -----------------VLAFSRDITTRKEAERQLRQSEKHFRALFELSRDGFILADAEG 337

Query: 473 IILSTNRAVSKLFGYPVEDILRK-PFTVFLEQNTPSVMNHYLT-EILSLDLRQTLEKITL 530
             L  N+A   + GY + ++     F     +         +   +          K  +
Sbjct: 338 RFLDANKAYCDMTGYSLPELRALGDFYALTPEKWHDWQRDEIWTRLFKSGDTGVYRKEYI 397

Query: 531 GSTKEEKLLSLRIIIKKLPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKE 581
              K+  +  + +    +             + DISE  + + ++    ++ E+ 
Sbjct: 398 --HKDGHVFPVELRDFAVHDDHGVVRYAWGIVRDISERVRTEERMRSLMQMVEQS 450


>gi|327537864|gb|EGF24566.1| signal transduction histidine kinase with CheB and CheR activity
            [Rhodopirellula baltica WH47]
          Length = 1637

 Score =  399 bits (1024), Expect = e-108,   Method: Composition-based stats.
 Identities = 140/739 (18%), Positives = 283/739 (38%), Gaps = 43/739 (5%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            +D    ++ ++ E+ + +       +G         +  D        L+R      +  
Sbjct: 769  LDDDLRVRRVTPEISRLLSIEPND-LGRSFESFIHPIQDD------QFLERVRQARDERV 821

Query: 149  LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                E +       + ALP Y RN E +G     ++    VD   RA    L  KF    
Sbjct: 822  ELEWEVSCRDSSYLVRALP-YLRNSEINGV----VIAFVDVDILRRAERDVLKFKFMADQ 876

Query: 209  EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
             I       +K K    +++          ++          +   K+    L  +    
Sbjct: 877  NIDALVLLDQKGKISYANRKMCDQLGYSNEEILGQLLSRFKSETDPKSFDDRLEKAHAKG 936

Query: 269  LPEQEDF-HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
                E +    +  ++  +     +    K+     +     SL    +    L  E V 
Sbjct: 937  GNLFESWLQQRDGTEFPVEVALTPVFLQGKQL--LFASIRDISLRKTHESQMRLLSEAVQ 994

Query: 328  KCPIPFFVYS----HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
                   +         + + N  F  +T +   + I    G +      + +DN     
Sbjct: 995  SAANGIVITDCSSEDHPITFVNKGFTDMTGFSEQEII----GRNCRFLQGEHTDNE--TV 1048

Query: 384  VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
            + + R+     +    +   + N E             ++        G++ +  +    
Sbjct: 1049 LRIRRALGRGESVRELIKNYRKNGEPFWN-DLYITPVHDENGILTHFVGVQNDVTERIEA 1107

Query: 444  KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRKPFTVFLE 502
             R+ E     +  +L++T++G+  ++ +G    +N   ++L GY     I+ K      +
Sbjct: 1108 ARQTETNERTIRLLLDSTAEGLFGLDVDGKCTFSNEKAARLLGYEHGSQIVGKELAELAQ 1167

Query: 503  QNTP---SVMNHYLTEILSLDLRQTLEK-ITLGSTKEEKLLSLRIIIKKLPFSS---CYS 555
               P         L  + ++   + + +       K+ +   +      +          
Sbjct: 1168 PCDPNGNPFEKDSLQILGAVRAGEAINRYDERFCRKDGESFPVEYWCHPIQEDGKIVGAV 1227

Query: 556  LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
            +T  DI    Q +N+L  AK  A+  +  KS FLA +SHE+RTPL+AI+GF+++++    
Sbjct: 1228 VTFVDIETRLQVENELREAKLAADAANEAKSHFLANMSHELRTPLSAILGFTKILQEDP- 1286

Query: 616  GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
                     EY + I R+G+ +L ++ D+LD+S+IE+ K       VSL E +++    +
Sbjct: 1287 ---DEGTIQEYLSTIQRNGDYLLRLLGDVLDLSRIEANKFTTATSSVSLGELLADIFETM 1343

Query: 676  QLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-- 732
            ++   + +  +    +  +PR I  D   ++QI +N+++NAI FTP G ++ +       
Sbjct: 1344 KMRTQDYQNTLHFDVSEPLPRTITTDSARLRQIMINLIANAIKFTPKG-RVEVVVRSEKI 1402

Query: 733  -SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
              +  ++L+V D G+G+ + +L    +PF Q   +   R  GTGLGL + K + +A  G 
Sbjct: 1403 DDDSFLLLKVIDDGIGIADEKLRTLFEPFVQADATISNRFGGTGLGLSITKRLTNALGGT 1462

Query: 792  FYIFSTPAKGTLIEIIFPL 810
              + ST  +G+   I  P+
Sbjct: 1463 IQVSSTEGEGSEFTIRLPV 1481



 Score = 99.3 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 60/499 (12%), Positives = 147/499 (29%), Gaps = 58/499 (11%)

Query: 89  IDAHGYLKEISEELPKTI----GNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144
           ID    +  +     + +    G  +  ++ M   ++   +       +   +K+Q+  +
Sbjct: 550 IDTDYRIIHVFPGANRYLTVPSGTPSDNILHMVPKELRASIGA----AVTQAIKQQSAVH 605

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            +    P++G +  +  +L   P +             ++   +      ALG  L    
Sbjct: 606 YQGIPSPVDGPDHVL--ELIVEPYH-----VPKLASSCVLIQFKASEMRTALGDAL---- 654

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
                           +                +++  L +  +     L+     L TS
Sbjct: 655 ------------TTSNESTESEGTLLDFSTAAHSRIEDLEQELSFNRQNLQATIEELETS 702

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
            E      E+    N    +  +   ++          L  R +    A  D    L   
Sbjct: 703 NEELQATNEEMVASNEELQSTNEELQSVNEELYSVNAELQVRVNEVNEANADMVNLLATT 762

Query: 325 TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
            V       F+     +    P    L   +  D     G        P + D+  ++ V
Sbjct: 763 RVG----VVFLDDDLRVRRVTPEISRLLSIEPNDL----GRSFESFIHP-IQDDQFLERV 813

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
              R +R  +          +       +        N     +    ++ + +      
Sbjct: 814 RQARDERVELEWEVSCRDSSY-------LVRALPYLRNSEINGVVIAFVDVDIL------ 860

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           R+ E +V++   + +   D + +++++G I   NR +    GY  E+IL +  + F  + 
Sbjct: 861 RRAERDVLKFKFMADQNIDALVLLDQKGKISYANRKMCDQLGYSNEEILGQLLSRFKSET 920

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI--IIKKLPFSSCYSLTMHDIS 562
            P   +  L +  +          +    ++     + +      L        ++ DIS
Sbjct: 921 DPKSFDDRLEKAHAKGGNL---FESWLQQRDGTEFPVEVALTPVFLQGKQLLFASIRDIS 977

Query: 563 EWKQEKNKLSHAKKIAEKE 581
             K  ++++    +  +  
Sbjct: 978 LRKTHESQMRLLSEAVQSA 996



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 41/391 (10%), Positives = 112/391 (28%), Gaps = 13/391 (3%)

Query: 198 KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKN-----KVSSLTEYYAHKDD 252
           KR D +      +   + SV        S   PPP  R +N      V    +       
Sbjct: 491 KRRDVRLPIELRMPLANQSVSPVMPQTPSIVEPPPQRRNENLLEIYNVLLADKMPPSLVI 550

Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
                   +       L       + N+     K+   ++     ++ +  S  ++  + 
Sbjct: 551 DTDYRIIHVFPGANRYLTVPSGTPSDNILHMVPKELRASIGAAVTQAIKQQSAVHYQGIP 610

Query: 313 AYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTK---YKSVDDIEIAGGLSTL 369
           +  D  +++    V+   +P    S   + +               S +  E  G L   
Sbjct: 611 SPVDGPDHVLELIVEPYHVPKLASSCVLIQFKASEMRTALGDALTTSNESTESEGTLLDF 670

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
             A      +  + +   R +             +    N   +      ++        
Sbjct: 671 STAAHSRIEDLEQELSFNRQNLQATIEELETSNEELQATNEEMVASNEELQSTNEELQSV 730

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
              +   + + ++   ++      + ++L  T  G+  ++ +  +      +S+L     
Sbjct: 731 NEELYSVNAELQVRVNEVNEANADMVNLLATTRVGVVFLDDDLRVRRVTPEISRLLSIEP 790

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
            D+  + F  F+           + +         +E     S ++   L   +   +  
Sbjct: 791 NDL-GRSFESFIHPIQDDQFLERVRQARDER----VELEWEVSCRDSSYLVRALPYLRNS 845

Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
             +   +   D+   ++ +  +   K +A++
Sbjct: 846 EINGVVIAFVDVDILRRAERDVLKFKFMADQ 876



 Score = 46.2 bits (108), Expect = 0.021,   Method: Composition-based stats.
 Identities = 15/148 (10%), Positives = 41/148 (27%), Gaps = 13/148 (8%)

Query: 86   TWNIDAHGYLKEISEELPKTIGNYA-FKMIGMRLCDVS-------DILHIDPNNHIGDLL 137
             + +D  G     +E+  + +G     +++G  L +++       +    D    +G + 
Sbjct: 1129 LFGLDVDGKCTFSNEKAARLLGYEHGSQIVGKELAELAQPCDPNGNPFEKDSLQILGAVR 1188

Query: 138  KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG 197
              +            +G +   P++    PI   + +  G                    
Sbjct: 1189 AGEAINRYDERFCRKDGESF--PVEYWCHPIQ-EDGKIVGA--VVTFVDIETRLQVENEL 1243

Query: 198  KRLDKKFSHLHEIKKGHSSVEKEKYDIF 225
            +         +E K    +    +    
Sbjct: 1244 REAKLAADAANEAKSHFLANMSHELRTP 1271


>gi|319781148|ref|YP_004140624.1| PAS sensor protein [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317167036|gb|ADV10574.1| PAS sensor protein [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 1545

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 132/748 (17%), Positives = 266/748 (35%), Gaps = 42/748 (5%)

Query: 90   DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI-LHIDPNNHIGDLLKRQNTWYGKTT 148
            D H     ++E      G     M+G    D               D+L     +  +  
Sbjct: 485  DDHLRFVFVNEAFAALFGQTPQAMLGKPGGDFLPTNAVALFEQSERDVLATGRPYEVEE- 543

Query: 149  LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
             + ++G +    +  + + + S     +GF  F I  + R + + +   K L      L 
Sbjct: 544  NFEVDGASRSRIVRKSRVGMASGRNYVAGFL-FDISDMKRRETEAQDARKHLASVLESLP 602

Query: 209  EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS------------------SLTEYYAHK 250
                 +   ++  +     Q   P L+   +                    S        
Sbjct: 603  AAVIIYDRDDRFVFANRKIQDTLPALKPAWQPGCTFREALVLGHANGYFRSSGDPQIDQL 662

Query: 251  DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310
             D         + +         + H  +   Y                 +    ++  +
Sbjct: 663  YDSDHDRWLDAILARYRLPSSSYERHNPDGRWYQVYDMRTDDGTFIGVRVDISEIKSREA 722

Query: 311  LSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
                     +L    +D+ P+  F+ +   ++ + N ++  +T     D I        L
Sbjct: 723  ALRDSMRQIDLFRHVMDELPVAAFIKAQDLSIEFVNKAWCAITGLAKEDVIGRTD--RQL 780

Query: 370  LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
              A      +                       +         +             ++ 
Sbjct: 781  FGAQDADGYSHDD--TQVAVTGVVKEVE---EPVTHRDGTVRQLMTRKSRLVALDG-SVH 834

Query: 430  QNGIEPEDVDTRINKRKMEIEVMQ---LCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
              G   +  D +  +R +E  + +     S+++     I     +      N+    L G
Sbjct: 835  LVGSSTDITDVKARERALEESMRENEVFRSLIDNVPVSIYAKRSDLRQFYVNKGWCDLTG 894

Query: 487  YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
            +  E+ + K        +  + +N  L  + + + ++  E +TL         + +  + 
Sbjct: 895  FSKEEAIGKTDIEIFGPDGEAFVNGDLAVLRTGETQEVEETVTLADGSVRHQFARKGAMI 954

Query: 547  KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
                S     +  DI+E K  + +L  A++ A      KS+FLA +SHEIRTP+  ++G 
Sbjct: 955  ASDGSLYLIGSTTDITELKMREAELREARQRAVLADRAKSEFLANMSHEIRTPMNGVLGM 1014

Query: 607  SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
            +E++         +P+   + + I +SGN +L I+ND+LD SKI++G++ L   P +L E
Sbjct: 1015 AELLAKSDL----DPKQKTFTDIIVKSGNALLTIINDILDFSKIDAGQLVLDPAPFNLAE 1070

Query: 667  AVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQ- 724
            A+ +  +LV   A EK + +       +  + + D+  ++QI  N+L NA+ FT  G   
Sbjct: 1071 AIEDVATLVSTRAKEKDLELIVRVEPRLESLFIGDVGRIRQIVTNLLGNAVKFTDEGHVL 1130

Query: 725  IIISTTHTSNE-EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
            + ++        ++ + V DTG+G+   +L+   + F Q+  S   R EGTGLGL +   
Sbjct: 1131 VDVTGERVPTGTKLTISVTDTGIGIPEEKLKLVFEKFSQVDTSSTRRHEGTGLGLAITSR 1190

Query: 784  MVDANMGKFYIFSTPAKGTL--IEIIFP 809
            +V+   G   + S   KG+     +  P
Sbjct: 1191 LVELMGGDIGVESAEGKGSTFWFSVTLP 1218



 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 62/529 (11%), Positives = 153/529 (28%), Gaps = 44/529 (8%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGM-RLCDVSDILHIDPNNHI-GDLLKRQNTW 143
            W  DA      +S+      G     ++G  R   ++ +L+ D +     + L+    +
Sbjct: 74  VWETDAELRFSWLSQNYQAATGIDPANVLGRFRFDFLNQVLNGDRSGAAHLEDLQAHRPF 133

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFG---------IVHVNRVDNDPR 194
                     G+     +  +  P +     F+G+RG G           ++ R  +   
Sbjct: 134 RDFVYEL-KAGSADCRWVLTSGFPKFDDEGRFAGYRGIGRNVTALAGAFKNLGREPSGDG 192

Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254
              + L      +  +  G   ++     +   ++     R+ +   ++   ++   ++ 
Sbjct: 193 EPDQHLADLERTMDAMHMGVVLLDARLDTLIVNKAYRDLSRIPDGAVAVGAPFSLLMELN 252

Query: 255 KTEKYP--------------LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF 300
           ++                   L    +      +F   N           +        +
Sbjct: 253 RSSGIYGDIDEQQWQRYLATRLDEIRAGSVAPREFVHANGRTMMFSVTALSGGRRLLTYY 312

Query: 301 EYLSHRNHPSLSAYFDEGENL----TPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYK 355
           E    +   +     +             VD+ PI   V          N +F    +  
Sbjct: 313 EVTEIKQRDAEIKSANARNAETFASLRTMVDQMPIGVLVLDADMRAEIINRAFYDFWQID 372

Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL---HTIQWNRENSLA 412
           +            +  +  +    A                 A +        N   +L 
Sbjct: 373 ARRAEIGCSFRDLMDASRDIDPFGADDASWQRHIAEREAEIRAGIAGSRQFPRNDGRTLI 432

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI--EVMQL-CSILEATSDGIAIIN 469
            +  P     +    +       +  D +  + ++    E  +L  +++ A  D I + +
Sbjct: 433 SSMAPLAGGKRLISYV-------DVTDMKDREAELADALEKARLAEAVINAVKDPIFVKD 485

Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
                +  N A + LFG   + +L KP   FL  N  ++      ++L+      +E+  
Sbjct: 486 DHLRFVFVNEAFAALFGQTPQAMLGKPGGDFLPTNAVALFEQSERDVLATGRPYEVEENF 545

Query: 530 LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578
                    +  +  +      +  +  + DIS+ K+ + +   A+K  
Sbjct: 546 EVDGASRSRIVRKSRVGMASGRNYVAGFLFDISDMKRRETEAQDARKHL 594



 Score = 41.9 bits (97), Expect = 0.41,   Method: Composition-based stats.
 Identities = 15/115 (13%), Positives = 36/115 (31%), Gaps = 4/115 (3%)

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--NTPSVMNH 511
           L  ++EA SD +   + E      ++      G    ++L +    FL Q  N       
Sbjct: 63  LRRLVEAGSDWVWETDAELRFSWLSQNYQAATGIDPANVLGRFRFDFLNQVLNGDRSGAA 122

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEW 564
           +L ++ +    +         + + + +      K         Y     +++  
Sbjct: 123 HLEDLQAHRPFRDFVYELKAGSADCRWVLTSGFPKFDDEGRFAGYRGIGRNVTAL 177


>gi|254412939|ref|ZP_05026711.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196180103|gb|EDX75095.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 1055

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 125/646 (19%), Positives = 239/646 (36%), Gaps = 58/646 (8%)

Query: 190 DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS---PPPHLRMKNKVS-SLTE 245
               +   +  + ++  + E +            +               K  +      
Sbjct: 211 VEQQKQQLQHSEFRYRAIIEDQSELICRYSADGILTFVNEVYCRYFGKTPKELIGHRFVP 270

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
                D  +       L         +      +     ++     + +N     E+ + 
Sbjct: 271 LIHPDDQAVLEGFIAELNPNNPVGIVEHRVILESGEIRWQQWSDRAIFDNQGRLLEFQAV 330

Query: 306 RNHPS----LSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDI 360
               +      A   + E      V        +    G + + NP+   L      + +
Sbjct: 331 GRDITDCKLTEARLRQSEARLNAIVSSTSDGIMIVDRQGQVLFTNPAAANLLNQDVENLL 390

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
               GL            N    + + R+D     A   +   +W  E+   +       
Sbjct: 391 NYNFGL--------PVGVNQTTELGIVRADGQLSFAEMSVVETEWEGESVFEICLR---- 438

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
                          +  + +  +  +     +  +I E  + GIA+    G ++  N+ 
Sbjct: 439 ---------------DVTERQRAEAALRESEERFRAIFEQAAVGIALGTPSGQLIRVNQR 483

Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
              L GY   ++L+  F      +  +   + LT++L+   R T  +      K+ +   
Sbjct: 484 FCDLVGYEESELLQLSFPDITHPDDRAAELNDLTQLLA-GQRSTYSREKRFIRKDGQWQW 542

Query: 541 LRIIIKKLPF----SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
           + + +  +       +     + DI + KQ +  L  A   AE  +  KS+FLA +SHE+
Sbjct: 543 VNVAVSLVRTWMDTPNYIIGVVEDIQQRKQTEVALQQALDAAEAANHGKSEFLANMSHEL 602

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTPL AI+GF++++         N    +Y   I RSG  +LD++N++L++SKIE+G+++
Sbjct: 603 RTPLNAILGFTQLMARD---ASLNQDQQDYLGIITRSGEHLLDLINNVLNMSKIEAGRIS 659

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNA 715
           L      L   V     +++L A  K + +      N+P   +AD   ++QI +N++ NA
Sbjct: 660 LSENSFDLYSLVDSIAEMLRLKALSKGVQLMVERTANVPNYGMADEGKLRQILINLVGNA 719

Query: 716 IHFTPSGGQIIISTTH-----------TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764
           + FT  G ++I+                +   +   V DTGVG+   EL+   + F Q  
Sbjct: 720 VKFTSQG-RVILRVQEISDRITAPTNTDTQSRLFFEVEDTGVGIPPDELDTLFQAFVQTK 778

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            S Q    GTGLGL +++  V    G   I STP +GTL++   P+
Sbjct: 779 TS-QRSQSGTGLGLAISRRFVQLMGGDITINSTPGQGTLVKFDIPI 823



 Score =  102 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 35/366 (9%), Positives = 90/366 (24%), Gaps = 22/366 (6%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
              A G L  ++E   +  G    ++IG R   +               L   N   G  
Sbjct: 238 RYSADGILTFVNEVYCRYFGKTPKELIGHRFVPLIHPDDQAVLEGFIAELNPNNPV-GIV 296

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
               I  +        +   I+        F+  G            A  ++ + + + +
Sbjct: 297 EHRVILESGEIRWQQWSDRAIFDNQGRLLEFQAVG--RDITDCKLTEARLRQSEARLNAI 354

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
                    +   +  +        +L  ++  + L   +     V +T +  ++     
Sbjct: 355 VSSTSDGIMIVDRQGQVLFTNPAAANLLNQDVENLLNYNFGLPVGVNQTTELGIV----R 410

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
           +  +        +            +  S                A   E E       +
Sbjct: 411 ADGQLSFAEMSVVETEW--------EGESVFEICLRDVTERQRAEAALRESEERFRAIFE 462

Query: 328 KCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
           +  +   +    G L   N  F  L  Y+  + ++++             D+ A +   L
Sbjct: 463 QAAVGIALGTPSGQLIRVNQRFCDLVGYEESELLQLS------FPDITHPDDRAAELNDL 516

Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
            +      +  +R             +                  G+  +    +  +  
Sbjct: 517 TQLLAGQRSTYSREKRFIRKDGQWQWVNVAVSLVRTWMDTPNYIIGVVEDIQQRKQTEVA 576

Query: 447 MEIEVM 452
           ++  + 
Sbjct: 577 LQQALD 582



 Score = 60.0 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/175 (9%), Positives = 55/175 (31%), Gaps = 7/175 (4%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKR-QNTWYGKTT 148
             G L  +++     +G    +++ +   D++         N +  LL   ++T+  +  
Sbjct: 473 PSGQLIRVNQRFCDLVGYEESELLQLSFPDITHPDDRAAELNDLTQLLAGQRSTYSREKR 532

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +G   +V + ++ +  +     +      G+V   +         ++        +
Sbjct: 533 FIRKDGQWQWVNVAVSLVRTWMDTPNYI----IGVVEDIQQRKQTEVALQQALDAAEAAN 588

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
             K    +    +       +     ++  + +SL +       ++      LL 
Sbjct: 589 HGKSEFLANMSHELRT-PLNAILGFTQLMARDASLNQDQQDYLGIITRSGEHLLD 642


>gi|119486187|ref|ZP_01620247.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
 gi|119456678|gb|EAW37807.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
          Length = 1955

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 122/733 (16%), Positives = 256/733 (34%), Gaps = 31/733 (4%)

Query: 91   AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150
              G L  ++E   +  G    ++IG               +     L  Q          
Sbjct: 1004 PDGKLSYVNEAFCRYYGVSRDEVIGHCYQPRIYPEDQPIIDRCLAQLSPQQPVGIVEHRV 1063

Query: 151  PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
             + G      +      IY         +  G             L  + + ++  + E 
Sbjct: 1064 IVNGE--VRWMQWTNQAIYDTEGNLVELQSVG--RDINDRKRVEELLHQSEARYLSILEY 1119

Query: 211  KKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
            +    +  K    +            +  ++ +    +   + +D    ++Y    S + 
Sbjct: 1120 QTEFITRFKPDGKLSYVNEAYCRYFGISKEDFLGHCYQPIIYPEDQATIDRYLAQISPQQ 1179

Query: 268  SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL----TP 323
             +   E+   +N      +     + +      E  S     +     +           
Sbjct: 1180 PVFNIENRVIVNGEVRWTQWTNQAIYDTQGNLVELQSVGRDINDRKQVELALKRVNQQLQ 1239

Query: 324  ETVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
               D  P    ++    +    N +F  L        +                +     
Sbjct: 1240 AFFDYSPAIIHIFDAEMVYRRVNRAFANLFNLSEEQIVG------RTFGDFFPEEIVNRF 1293

Query: 383  PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
               +                +  ++         P    +   +      I  +  + + 
Sbjct: 1294 RTRVKILVDGGKPLIIEDELVINDQSKIFESILFPLI--DDNGKFTLFGSIVTDISERKQ 1351

Query: 443  NKRKMEIEVMQLCSILEATSDGIAIINREGI-ILSTNRAVSKLFGYP-VEDILRKPFTVF 500
             + ++        +I   ++D I +++ + I I+  NR   +LF     E+++       
Sbjct: 1352 AELELRKSRDLRDAIFHESADAIFLVDVDSILIVDCNRRAVELFEAQKREELIGIAGYTL 1411

Query: 501  LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
             +Q        Y    ++      LE   +   +     +L +    +     + + + D
Sbjct: 1412 QKQPFTPQEIEYSRNEVNQKGFWNLEVEYITKKENTFWGNLAVKPIYIGDQMFHLVRVTD 1471

Query: 561  ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
            IS+ KQ + +L  AK++AE  S  K  F+A +SHE+R+PL AI+GFS ++KN     L  
Sbjct: 1472 ISDRKQIELELQKAKEVAEAASEAKGAFIANMSHELRSPLNAILGFSRLLKNNSQISLDE 1531

Query: 621  PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
                + A  I RSG  +L+++N +LD++KIE+ ++ +    ++LD+ + +  ++  L A 
Sbjct: 1532 ---RKNAEIIYRSGEHLLNLINQVLDLAKIEANRITVEPTDLNLDQLIDDIYNMFYLKAQ 1588

Query: 681  EKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNE- 735
            E+ +       +++P  I  D   ++Q+ +N+LSNA+ FT  G     I + +  + N  
Sbjct: 1589 EQGLNFNVQKTSDVPCSICTDEIKLRQVFINLLSNALKFTKRGFITLNISVKSKKSDNNV 1648

Query: 736  EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
             +   V DTGVG+   E     + F Q   + +   EGTGLGL +++  +    G+  + 
Sbjct: 1649 MLNFEVEDTGVGIAPEEQTDIFEAFNQ-SQAGKQVKEGTGLGLAISREFIKLMGGEISVE 1707

Query: 796  STPAKGTLIEIIF 808
            S    G+  +   
Sbjct: 1708 SQVNIGSKFQFYI 1720



 Score =  132 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 60/520 (11%), Positives = 157/520 (30%), Gaps = 39/520 (7%)

Query: 98   ISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL----KRQNTWYGKTTLWPIE 153
             S +L K +G    ++    +   S+ +H D  +H+   L    +  + +  +  +   +
Sbjct: 620  WSPQLYKLLGLSVAEIEADPVPQFSNFVHPDDRDHLQQALTDHLENNHPYIIELRVQRSD 679

Query: 154  GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA-LGKRLDKKFSHLHEIKK 212
            G   Y    +        N +    R  G              LGK       +  +   
Sbjct: 680  GR--YRWFLIKGQASRYPNGKPE--RMVGSFSDITNRKQIEEKLGKTEQWLQQYSRQSPS 735

Query: 213  GHSSVEKEKYDIFSQQSPPPHLRMKNKV--------SSLTEYYAHKDDVLKTEKYPLLTS 264
               ++  E       +     +   ++V        ++L     H DD          ++
Sbjct: 736  SIYTLVLEPDGRLWFEYTSSAVETIHEVTLAQALENANLVIEQMHPDDRAGYLAAWTRSA 795

Query: 265  EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
            E   L   E        Q    Q     +  S  +  +       S      E    + E
Sbjct: 796  ESLELFSHEWRIITPTGQLKWLQATSKPERRSNGAIAWHGVIQDISEHKQAQEALRRSEE 855

Query: 325  TVDKCPIP-------FFVYSHGNL--FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
               +              Y +G +   Y +P+F  + +      +E A    T     + 
Sbjct: 856  RFQELAAASPGVIYTVIEYPNGPVCYEYLSPAFEDIHEISVESVLEDATI--TFNQIHRD 913

Query: 376  SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
              +   + +              R+ T          +      +  +  E +  +G+  
Sbjct: 914  DRDGYKQAIKESLESGKPFKYEWRIFT---PSGKIKWIQANSRPQRRENGE-IAWHGVVQ 969

Query: 436  EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
            +  + +  +  +     +  SILE  ++ +     +G +   N A  + +G   ++++  
Sbjct: 970  DISERKQAQELLHQSEARYLSILEYQTELVTRFKPDGKLSYVNEAFCRYYGVSRDEVIGH 1029

Query: 496  PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555
             +   +      +++  L ++        +E   +      ++  ++   + +  +    
Sbjct: 1030 CYQPRIYPEDQPIIDRCLAQLSPQQPVGIVEHRVIV---NGEVRWMQWTNQAIYDTEGNL 1086

Query: 556  L----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
            +       DI++ K+ +  L  ++        ++++F+ R
Sbjct: 1087 VELQSVGRDINDRKRVEELLHQSEARYLSILEYQTEFITR 1126



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 44/297 (14%), Positives = 89/297 (29%), Gaps = 28/297 (9%)

Query: 313 AYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTK----YKSVDDIEIA---- 363
                 E      +D  PI   +   +G     N     +        S D I       
Sbjct: 439 QALKLSEQRFSSLLDNIPIGVSILDRNGQHILINKVSEQILGQGIKTTSYDQISEVYQVY 498

Query: 364 -GGLSTLLDAPKLSD------NNAIKPVMLYRSDRTCIAASARLHTI--QWNRENSLAMT 414
             G + L    +L               M    +   I        +  +W   +   + 
Sbjct: 499 IAGTNQLYPTEELPGFRSLKGEKVQVDDMEVEVNGRRIPLEVTSIPVFDEWGTVHYSIIA 558

Query: 415 FIPFEKANQFPENM--PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG 472
           F    + +   +     Q  +E E  +  +    ++    +L  ++ A  +GI   +   
Sbjct: 559 FQDITERHHIEQLQKNYQQQLEQEITERTLA---LQKSEERLKLVIAAMGEGIWDWDIIN 615

Query: 473 IILSTNRAVSKLFGYPVEDILRKP---FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
                +  + KL G  V +I   P   F+ F+  +    +   LT+ L  +    +E   
Sbjct: 616 NTAWWSPQLYKLLGLSVAEIEADPVPQFSNFVHPDDRDHLQQALTDHLENNHPYIIELRV 675

Query: 530 LGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
             S    +   ++    + P         +  DI+  KQ + KL   ++  ++ S  
Sbjct: 676 QRSDGRYRWFLIKGQASRYPNGKPERMVGSFSDITNRKQIEEKLGKTEQWLQQYSRQ 732



 Score = 91.2 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 67/619 (10%), Positives = 178/619 (28%), Gaps = 66/619 (10%)

Query: 22   TQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPR 81
            TQ+L++  + N  E  + K+ N   DSF +        +  S+   L       F  +  
Sbjct: 400  TQELAQNNLLNPLEKTRIKEINQLTDSFAEMA-----AQLNSSFQALKLSE-QRFSSLLD 453

Query: 82   TVRF-TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI--GDLLK 138
             +      +D +G    I++   + +G         ++ +V   ++I   N +   + L 
Sbjct: 454  NIPIGVSILDRNGQHILINKVSEQILGQGIKTTSYDQISEV-YQVYIAGTNQLYPTEELP 512

Query: 139  RQNTWYGKTTL---WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA 195
               +  G+        +E     +P+++ ++P++        +            +    
Sbjct: 513  GFRSLKGEKVQVDDMEVEVNGRRIPLEVTSIPVFDEWGTV-HYSIIA-FQDITERHHIEQ 570

Query: 196  LGK-RLDKKFSHLHEIKKGHSSVEKEKYDIFSQ-----------QSPPPHLRMKNKVSSL 243
            L K    +    + E        E+    + +             +         K+  L
Sbjct: 571  LQKNYQQQLEQEITERTLALQKSEERLKLVIAAMGEGIWDWDIINNTAWWSPQLYKLLGL 630

Query: 244  TEYYAHKD-----------DVLKTEKYPLLTSEESSLPE--QEDFHTINLNQYTKKQYFG 290
            +      D           D     +  L    E++ P   +      +           
Sbjct: 631  SVAEIEADPVPQFSNFVHPDDRDHLQQALTDHLENNHPYIIELRVQRSDGRYRWFLIKGQ 690

Query: 291  TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV----DKCPIPFF---VYSHGNL-- 341
              +  + +    +   +  +     +E    T + +     + P   +   +   G L  
Sbjct: 691  ASRYPNGKPERMVGSFSDITNRKQIEEKLGKTEQWLQQYSRQSPSSIYTLVLEPDGRLWF 750

Query: 342  FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401
             Y + +   + +      +E A      L   ++  ++    +  +      +   +   
Sbjct: 751  EYTSSAVETIHEVTLAQALENAN-----LVIEQMHPDDRAGYLAAWTRSAESLELFSHEW 805

Query: 402  TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
             I         +      +       +  +G+  +  + +  +  +     +   +  A+
Sbjct: 806  RIITPTGQLKWLQATSKPERRSNG-AIAWHGVIQDISEHKQAQEALRRSEERFQELAAAS 864

Query: 462  SDGIAII--NREG--IILSTNRAVSKLFGYPVEDILRKPFTVF--LEQNTPSVMNHYLTE 515
               I  +     G       + A   +    VE +L      F  + ++        + E
Sbjct: 865  PGVIYTVIEYPNGPVCYEYLSPAFEDIHEISVESVLEDATITFNQIHRDDRDGYKQAIKE 924

Query: 516  ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL---TMHDISEWKQEKNKLS 572
             L        +      T   K+  ++   +     +        + DISE KQ +  L 
Sbjct: 925  SLESGKP--FKYEWRIFTPSGKIKWIQANSRPQRRENGEIAWHGVVQDISERKQAQELLH 982

Query: 573  HAKKIAEKESSHKSDFLAR 591
             ++        ++++ + R
Sbjct: 983  QSEARYLSILEYQTELVTR 1001



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 31/389 (7%), Positives = 96/389 (24%), Gaps = 25/389 (6%)

Query: 85   FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144
            F       G L  ++E   +  G      +G     +         +     +  Q   +
Sbjct: 1123 FITRFKPDGKLSYVNEAYCRYFGISKEDFLGHCYQPIIYPEDQATIDRYLAQISPQQPVF 1182

Query: 145  GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
                   + G             IY         +  G               KR++++ 
Sbjct: 1183 NIENRVIVNGE--VRWTQWTNQAIYDTQGNLVELQSVG--RDINDRKQVELALKRVNQQL 1238

Query: 205  SHLHEIKKGHSSVEKEK--YDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP-- 260
                +       +   +  Y   ++         + ++   T      ++++   +    
Sbjct: 1239 QAFFDYSPAIIHIFDAEMVYRRVNRAFANLFNLSEEQIVGRTFGDFFPEEIVNRFRTRVK 1298

Query: 261  LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN---SKESFEYLSHRNHPSLSAYFDE 317
            +L      L  +++    + ++  +   F  + +N   +                    +
Sbjct: 1299 ILVDGGKPLIIEDELVINDQSKIFESILFPLIDDNGKFTLFGSIVTDISERKQAELELRK 1358

Query: 318  GENLTPETVDKCPIPFFVYSHGN--LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
              +L      +     F+    +  +   N   + L + +  +++    G        K 
Sbjct: 1359 SRDLRDAIFHESADAIFLVDVDSILIVDCNRRAVELFEAQKREELIGIAG----YTLQKQ 1414

Query: 376  SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
                          ++         +  +        +   P    +Q    +       
Sbjct: 1415 PFTPQEIEYSRNEVNQKGFWNLEVEYITKKENTFWGNLAVKPIYIGDQMFHLVRV----T 1470

Query: 436  EDVDTRINKRKMEIEVMQLCSILEATSDG 464
            +  D +  + +++        + EA S+ 
Sbjct: 1471 DISDRKQIELELQKAKE----VAEAASEA 1495


>gi|300864100|ref|ZP_07108999.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300337916|emb|CBN54145.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 1865

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 118/673 (17%), Positives = 238/673 (35%), Gaps = 38/673 (5%)

Query: 160  PIDLAALPIYSRNREFSGFRGFG-IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVE 218
             + ++  PI       SG+  F  +           A   + +++     +     +   
Sbjct: 953  WLSVSVCPI---ELSPSGYPRFCYVAKDITDRKRAEAALAKSEEQLRLTLDFTHIGTWDW 1009

Query: 219  KEKYDIFSQQSPPPHLRMKNKVSSLTEYYA------HKDDVLKTEKYPLLTSEESSLPEQ 272
                +  +       L       +   Y         +D     +       + +    +
Sbjct: 1010 NVHTNEVNWNDNHFRLLGVEPQQASDPYQLWRKAIHPEDLDRIEQALSNALFQHTDYEAE 1069

Query: 273  EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP 332
                  +            + N + E  + L      S     ++   L           
Sbjct: 1070 YRVVYPDGTVRWLVGKGRGIYNEAGEPLKMLGVIFDVSDRKLAEQTLELQAVITRSMAEG 1129

Query: 333  FFVYSHGN--LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390
              +    N  + YANP F  +  Y + +       +       ++      + +      
Sbjct: 1130 ICLVRADNGLIIYANPKFEQMFGYDAGEMNGQHVAIVN-YGNEQIEPEEVNQAIRTAVLQ 1188

Query: 391  RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450
                A       ++ +             K  ++ + M    +  +  D    +  +   
Sbjct: 1189 NGEFAYQVH--NVKKDGTPFWCSATCSVFKHPEYGDVM--VAVHQDITDRTQAEAALRES 1244

Query: 451  VMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILRKPFTVF--LEQNTPS 507
              +     E   D   + + +   +L  + A   ++    E +   P      +  +   
Sbjct: 1245 EEKFRQFAENIQDVFWMTDNQTQQLLYVSPAYEIIWQRSCETLYSNPLNWLATIHPDDRP 1304

Query: 508  VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISE 563
             +       +        ++       +  +  +R     +   +      +    DIS+
Sbjct: 1305 QVEAA---YIEQQKTGIYDREYRIVRPDNSIRWIRDRGFPIRDEAGNIIRMTGIAEDISD 1361

Query: 564  WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             KQ + +L+ AK+ A   +  KS+FLA +SHEIRTP+ AI+GFS++++    G + +P+ 
Sbjct: 1362 RKQTEVELAAAKEAAVAANRAKSEFLANMSHEIRTPMNAILGFSDLLQ----GSISDPQP 1417

Query: 624  IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
              Y N I  SG  +L ++ND+LD+SKIE+GK+ L +EPV +   V E   ++   A +K 
Sbjct: 1418 RAYLNSIAASGRTLLALINDILDLSKIEAGKLQLQYEPVDVRSLVREIQEILDPKALKKS 1477

Query: 684  ILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSG-GQIIISTTHT-----SNEE 736
            + +      N+P  IL D   ++QI  N + NA+ FT +G  +I +          +  +
Sbjct: 1478 LSLLVEIDENVPTAILFDPIRLRQILFNTVGNALKFTEAGFVKISVRAQLDLSPSSNRVQ 1537

Query: 737  VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
            + + + DTG+G+   +     + F Q       +  GTGLGL + K + +   G   + S
Sbjct: 1538 IEITIADTGIGICLEQQHSIFEAFKQSEGQSTRKYGGTGLGLAITKRLTEMLGGTVRLES 1597

Query: 797  TPAKGTLIEIIFP 809
               KG+    IFP
Sbjct: 1598 ELGKGSAFTFIFP 1610



 Score =  135 bits (340), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 60/500 (12%), Positives = 143/500 (28%), Gaps = 27/500 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D +  +   +       G    + +G  L  +       P   I   L     W G+  
Sbjct: 378 VDLNDAITFWNHGAAVLYGFSQTEALGKTLAQLLSTNFPKPLTEIKKELFEYGRWEGELI 437

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +GT   + +            +  G        + +     +AL     +    L 
Sbjct: 438 QQRGDGTL--IFVASRWTVQRDLAGKPKGIMKIN-ADITKSKQAEKALIYSSLRLSKILD 494

Query: 209 EIKKGHSSVEKEKYDIFSQQSPP--PHLRMKNKVS-SLTEYYAHKDDVLKTE-----KYP 260
             K    SV+  +      +             +  SLT     + D + +E        
Sbjct: 495 IAKDAIISVDDLQTITLFNKGAEKIFGYTAAEVLGKSLTLLLPSRFDSVYSEKFTNVPQS 554

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFG--TLQNNSKESFEYLSHRNHPSLSAYFDEG 318
              +       +      +   +  +       L      +                 E 
Sbjct: 555 DEKTRRMEERNEVFGRRKDGTVFPAEASISKLELNGEKIYTAILRDISERKIAETSLRER 614

Query: 319 ENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
           E    +  ++ PI   +          NP    +  Y   + +                D
Sbjct: 615 EERFRKVFEEGPIGMAIVGLDYRFIKVNPMLCQMIGYTESELLA------LTFSNITHPD 668

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
           +  I   +  R  +  +             + ++ ++       ++  + +    +  + 
Sbjct: 669 DLEIDVQLAQRLFKGEVPFYKIEKRYLKKNQETIWVSLTGSIVRDRDGQPIYYIAMIEDI 728

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
            + +  ++ ++    Q   I+  T DGI ++NR+ I    N A    +     +I+    
Sbjct: 729 TNRKRAEKSLQ----QYERIVSTTLDGIVLLNRDYIYQIANPAYLSWYNKSSHEIIGHSV 784

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII--KKLPFSSCYS 555
              + Q     ++  L + L+ +  Q  EK+       +K LS+            S   
Sbjct: 785 KDIVGQEVFENLSPALEQALAGETIQ-FEKLFEHLPGGKKFLSVTFTPYFAVEQEISGVL 843

Query: 556 LTMHDISEWKQEKNKLSHAK 575
           +++ D+++ K+ +N L  ++
Sbjct: 844 ISLRDLTKLKEAENSLQQSE 863



 Score =  128 bits (322), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 53/532 (9%), Positives = 152/532 (28%), Gaps = 31/532 (5%)

Query: 56   DQNQESVSNTNYLDSENTFV--FDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM 113
            D ++  ++ T+  + E  F   F+  P  +             +++  L + IG    ++
Sbjct: 600  DISERKIAETSLREREERFRKVFEEGPIGMAIV---GLDYRFIKVNPMLCQMIGYTESEL 656

Query: 114  IGMRLCDVSDILHIDPNNHIG-DLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172
            + +   +++    ++ +  +   L K +  +Y     +  +     + + L    +  R+
Sbjct: 657  LALTFSNITHPDDLEIDVQLAQRLFKGEVPFYKIEKRYLKKN-QETIWVSLTGSIVRDRD 715

Query: 173  REFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP 232
             +   +    ++             ++ ++  S   +            Y I +      
Sbjct: 716  GQPIYY--IAMIEDITNRKRAEKSLQQYERIVSTTLD--GIVLLNRDYIYQIANPAYLSW 771

Query: 233  HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS-EESSLPEQEDFHTINLNQYTKKQYFGT 291
            + +  +++   +       +V +     L  +    ++  ++ F  +   +      F  
Sbjct: 772  YNKSSHEIIGHSVKDIVGQEVFENLSPALEQALAGETIQFEKLFEHLPGGKKFLSVTFTP 831

Query: 292  LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD------KCPIPFFVYSHGNLFYAN 345
                 +E    L      +     +     +  T+         P+      +G++ + +
Sbjct: 832  YFAVEQEISGVLISLRDLTKLKEAENSLQQSESTLRSFFNSGAMPMGIVELHNGDILHIS 891

Query: 346  PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405
             ++     ++S  +       S L      S    I+    Y      I A  R      
Sbjct: 892  DNWAAAQFFESTPEAMQNQFASAL-----GSPPTTIEQWTTYYQQSQQIQAPVRFEHFYE 946

Query: 406  NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465
                   ++                  +  +  D +  +  +     QL   L+ T  G 
Sbjct: 947  TSTKQGWLSVSVCPIELSPSGYPRFCYVAKDITDRKRAEAALAKSEEQLRLTLDFTHIGT 1006

Query: 466  AIINREGIILSTNRAVSKLFGYPVEDI--LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
               N     ++ N    +L G   +      + +   +       +   L+  L      
Sbjct: 1007 WDWNVHTNEVNWNDNHFRLLGVEPQQASDPYQLWRKAIHPEDLDRIEQALSNALFQ--HT 1064

Query: 524  TLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKL 571
              E        +  +  L    + +   +         + D+S+ K  +  L
Sbjct: 1065 DYEAEYRVVYPDGTVRWLVGKGRGIYNEAGEPLKMLGVIFDVSDRKLAEQTL 1116



 Score =  123 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 74/622 (11%), Positives = 166/622 (26%), Gaps = 94/622 (15%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151
            G +   ++     +     K+IG     +                +  +    +  L  
Sbjct: 77  DGLILYCNKSFSNLLKQPLEKLIGSYFQFLISPHDTPLFQARVQQAEMGDRHPVEMFLLA 136

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
            +G  + +P+ L+  P+   +   +      ++                +K    + E  
Sbjct: 137 RDG--VEIPVYLSINPLILDDSPIN----CLVITDLTEQK-RHEKTIASEKLARLILEQA 189

Query: 212 KGHSSVEKEKYDIFSQQS-------------PPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
                V      I    +             P   L + +   S       ++ +L    
Sbjct: 190 GEAILVCDHTGQIIRASAIAQQLWGENLLFQPFDRLGIFSFFQSNFSLVISQEKILSAAD 249

Query: 259 YPLLTS------------EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
               +              E+    + +F   +            L +        +   
Sbjct: 250 IARNSPVKVPFSITPVLHGETYKGLEVEFERRDGQVLNLVLNARPLADQDNNFRGAVVIL 309

Query: 307 NHPSLSAYFDEGENLT---------------------------------------PETVD 327
            + +     +                                              + +D
Sbjct: 310 TNITQRKQAENALQAAKKDLEIKVVERTQELQVANYRLQLELLERERREKILQDQAQLID 369

Query: 328 KCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
                   V  +  + + N    +L  +   + +          + PK       +    
Sbjct: 370 LAHDAILTVDLNDAITFWNHGAAVLYGFSQTEALGKTLAQLLSTNFPKPLTEIKKELFEY 429

Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
            R +   I         Q      + +      + +   +      I  +   ++  ++ 
Sbjct: 430 GRWEGELI--------QQRGDGTLIFVASRWTVQRDLAGKPKGIMKINADITKSKQAEKA 481

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
           +    ++L  IL+   D I  ++    I   N+   K+FGY   ++L K  T+ L     
Sbjct: 482 LIYSSLRLSKILDIAKDAIISVDDLQTITLFNKGAEKIFGYTAAEVLGKSLTLLLPSRFD 541

Query: 507 SVMNHYLTEILSLDL--RQTLEK-ITLGSTKEEKLLSLRIIIKKLP--FSSCYSLTMHDI 561
           SV +   T +   D   R+  E+    G  K+  +      I KL       Y+  + DI
Sbjct: 542 SVYSEKFTNVPQSDEKTRRMEERNEVFGRRKDGTVFPAEASISKLELNGEKIYTAILRDI 601

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR----TP-LTAIIGFSE-VIKNQRF 615
           SE K  +  L   ++   K        +A V  + R     P L  +IG++E  +    F
Sbjct: 602 SERKIAETSLREREERFRKVFEEGPIGMAIVGLDYRFIKVNPMLCQMIGYTESELLALTF 661

Query: 616 GPLGNPRYIEYANYIDRSGNLV 637
             + +P   +      +    +
Sbjct: 662 SNITHP---DDLEIDVQLAQRL 680



 Score =  118 bits (296), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 43/522 (8%), Positives = 122/522 (23%), Gaps = 86/522 (16%)

Query: 117 RLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFS 176
              D++    +     I  +L    T+ G    +        + + L A P+  ++  F 
Sbjct: 246 SAADIARNSPVKVPFSITPVLH-GETYKGLEVEFERR-DGQVLNLVLNARPLADQDNNFR 303

Query: 177 GFRGFGIVHVNRVDNDPRALGKRLDKKFS----------------------------HLH 208
           G     I+             +   K                                + 
Sbjct: 304 GA--VVILTNITQRKQAENALQAAKKDLEIKVVERTQELQVANYRLQLELLERERREKIL 361

Query: 209 EIKKGHSSVEKEKYDIFSQQSP-PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
           + +     +  +                    +   ++  A    + +            
Sbjct: 362 QDQAQLIDLAHDAILTVDLNDAITFWNHGAAVLYGFSQTEALGKTLAQLLSTNFPKPLTE 421

Query: 268 ---------SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS----LSAY 314
                        +      +         +   ++ + +    +      +        
Sbjct: 422 IKKELFEYGRWEGELIQQRGDGTLIFVASRWTVQRDLAGKPKGIMKINADITKSKQAEKA 481

Query: 315 FDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEI------AGGLS 367
                    + +D        V     +   N     +  Y + + +             
Sbjct: 482 LIYSSLRLSKILDIAKDAIISVDDLQTITLFNKGAEKIFGYTAAEVLGKSLTLLLPSRFD 541

Query: 368 TLLDA---------PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
           ++             K         V   R D T   A A +  ++ N E          
Sbjct: 542 SVYSEKFTNVPQSDEKTRRMEERNEVFGRRKDGTVFPAEASISKLELNGEKI-------- 593

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
                         I  +  + +I +  +     +   + E    G+AI+  +   +  N
Sbjct: 594 -----------YTAILRDISERKIAETSLREREERFRKVFEEGPIGMAIVGLDYRFIKVN 642

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
             + ++ GY   ++L   F+     +   +       +   ++    +       K ++ 
Sbjct: 643 PMLCQMIGYTESELLALTFSNITHPDDLEIDVQLAQRLFKGEVP-FYKIEKRYLKKNQET 701

Query: 539 LSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKK 576
           + + +    +         Y   + DI+  K+ +  L   ++
Sbjct: 702 IWVSLTGSIVRDRDGQPIYYIAMIEDITNRKRAEKSLQQYER 743



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 39/354 (11%), Positives = 100/354 (28%), Gaps = 64/354 (18%)

Query: 277 TINLNQYTKKQYFGTLQNNSKESF-----EYLSHRNHPSLSAYFDEGENLTPETVDKCPI 331
            +     + ++     ++  +          +               +      V++   
Sbjct: 10  ELLAEIQSLRERLTASEDIVRAIQQGEVDALVISTAQGRKVFTLQSADLSYRLLVEEMQQ 69

Query: 332 P-FFVYSHGNLFYANPSFLLLTKYKSVDDIEI------AGGLSTLLDAPKLSDNNAIK-- 382
               + + G + Y N SF  L K      I        +   + L  A         +  
Sbjct: 70  GAVVLSTDGLILYCNKSFSNLLKQPLEKLIGSYFQFLISPHDTPLFQARVQQAEMGDRHP 129

Query: 383 -PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
             + L   D   I     ++ +  +      +                      +  + +
Sbjct: 130 VEMFLLARDGVEIPVYLSINPLILDDSPINCLVI-------------------TDLTEQK 170

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
            +++ +         ILE   + I + +  G I+  +    +L+G   E++L +PF    
Sbjct: 171 RHEKTI-ASEKLARLILEQAGEAILVCDHTGQIIRASAIAQQLWG---ENLLFQPFDRLG 226

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEK----------------------ITLGSTKEEKLL 539
             +        +     +     + +                            ++ ++L
Sbjct: 227 IFSFFQSNFSLVISQEKILSAADIARNSPVKVPFSITPVLHGETYKGLEVEFERRDGQVL 286

Query: 540 SLRIIIKKLPFS----SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
           +L +  + L           + + +I++ KQ +N L  AKK  E +   ++  L
Sbjct: 287 NLVLNARPLADQDNNFRGAVVILTNITQRKQAENALQAAKKDLEIKVVERTQEL 340



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 48/408 (11%), Positives = 103/408 (25%), Gaps = 53/408 (12%)

Query: 88   NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
              D +G +   + +  +  G  A +M G  +  V+          +   ++      G+ 
Sbjct: 1134 RAD-NGLIIYANPKFEQMFGYDAGEMNGQHVAIVNYGNEQIEPEEVNQAIRTAVLQNGEF 1192

Query: 148  TL----WPIEGTNLYVPIDLAA--LPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
                     +GT  +     +    P Y       G     +           A  +  +
Sbjct: 1193 AYQVHNVKKDGTPFWCSATCSVFKHPEY-------GDVMVAVHQDITDRTQAEAALRESE 1245

Query: 202  KKFSHLHEIKKGHSSVEK----------EKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD 251
            +KF    E  +    +              Y+I  Q+S            +      H D
Sbjct: 1246 EKFRQFAENIQDVFWMTDNQTQQLLYVSPAYEIIWQRSCETLYSNPLNWLAT----IHPD 1301

Query: 252  DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
            D  + E   +   +      +      + +    +     +++ +             S 
Sbjct: 1302 DRPQVEAAYIEQQKTGIYDREYRIVRPDNSIRWIRDRGFPIRDEAGNIIRMTGIAEDISD 1361

Query: 312  SAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
                +       E                   A   FL    ++    +    G S LL 
Sbjct: 1362 RKQTEVELAAAKEAAVAAN------------RAKSEFLANMSHEIRTPMNAILGFSDLLQ 1409

Query: 372  APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
                          +  S RT +A    +  +       L + + P +  +   E     
Sbjct: 1410 GSISDPQPRAYLNSIAASGRTLLALINDILDLSKIEAGKLQLQYEPVDVRSLVRE----- 1464

Query: 432  GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR-EGIILSTN 478
                E +D +     ++  +  L  I E     I + +      +  N
Sbjct: 1465 --IQEILDPK----ALKKSLSLLVEIDENVPTAI-LFDPIRLRQILFN 1505


>gi|300865045|ref|ZP_07109872.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300336982|emb|CBN55022.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 1122

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 105/541 (19%), Positives = 209/541 (38%), Gaps = 39/541 (7%)

Query: 296  SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKY 354
               + E  +      L A   + +        + P+    +  +  +   NP    +  Y
Sbjct: 593  RDITAEKEAEAEKMGLIASLQKSQKKLALHFQQTPVGVIEWKVNFEVSEWNPGAEQIFGY 652

Query: 355  KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
               + +   G    LL               L  +        +    ++ + +  L   
Sbjct: 653  SREEALGRNGI--ELLIPNTDLSYIHQLWAELSTNRGGR---RSTNENVRKDGKIILCEW 707

Query: 415  FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI- 473
            +      +     +    +  +  + +    ++     +   + E   +   +I+     
Sbjct: 708  YN-TTLIDDDGNVVGVASLVQDVTELQRIVGELRASEERFRQMAENIHEVFWMIDPNQKQ 766

Query: 474  ILSTNRAVSKLFGYPVEDILRKP--FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
            IL  + A  +++G   + +   P      +  +    +  ++ +    + +   ++    
Sbjct: 767  ILYVSPACEQIWGCSRQSLYENPQCLASAIHPDDRERVMSFIEK----NTQAEYDREYRI 822

Query: 532  STKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
               +  +  +R     +               DI++ K  + +     + A   +  KS 
Sbjct: 823  LRPDGSICWIRDRAFPIYNDVGEIYRIVGIAEDITQRKLAE-EFQKVAQSAVAANQAKSA 881

Query: 588  FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
            FLA +SHE+RTPL AIIG+S+ +  +    LG   +I   + I R+G  +L +++D+LDI
Sbjct: 882  FLANMSHELRTPLNAIIGYSD-LLKEDAEDLGAEEFISDLDRIQRAGKHLLGLISDILDI 940

Query: 648  SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707
            SKIE+G+M L+ E  +  + + E I+ V+    +    +  SF +N+  + AD    +QI
Sbjct: 941  SKIEAGRMELYLENFNPVDLIEEVIATVEPLVMKNSNKLEVSFGSNLDEMYADPTKTRQI 1000

Query: 708  ALNILSNAIHFTPSGGQIIISTTHTS--------NEEVI----------LRVRDTGVGMT 749
             LN+LSNA  FT  G  I I+ T           N ++            +V DTG+GM+
Sbjct: 1001 LLNLLSNAAKFTKDG-TITITLTKDEKVGNEEIFNGDIESEGDYLCFLLFQVADTGIGMS 1059

Query: 750  NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
              +LE   +PF Q   S   +  GTGLGL +++       G   + S    G++  +  P
Sbjct: 1060 ATQLEHLFQPFMQGDTSTTRQYGGTGLGLAISRHFCLMMGGDIEVESKLGSGSVFTVRLP 1119

Query: 810  L 810
            +
Sbjct: 1120 V 1120



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/245 (10%), Positives = 70/245 (28%), Gaps = 31/245 (12%)

Query: 339 GNLFYANPSFLLLTKYKS---VDDIEIAGGLSTLLDAPKLSDNNAI-----KPVMLYRSD 390
             +   N  F+ +T       +D + +             ++           +++    
Sbjct: 309 DFILDGNRQFVQVTPLSDGRGLDWLIVVVVPEADFMDEINANTRTTILLCLGALIVATLL 368

Query: 391 R------------TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
                            A+      +W  E  +  +      A  F     Q       +
Sbjct: 369 GILTSKWIVGPIERLSKAAEAFSRGEWEGELQVNRSQELGVLARSFNSMAGQLQESFATL 428

Query: 439 DTRINKR--KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
           + R+     +++  ++ L +I++  +DG+ +I++ G I   N A+  LF     ++  K 
Sbjct: 429 EERVETATEELQEALVYLSAIVDNLADGLLVIDQNGKIARFNPALLILFDLSEINLEGK- 487

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLE-KITLGSTKEEKLLSLRIIIKKLPFSSCYS 555
                      V    +T+++        +           +     +       ++   
Sbjct: 488 -------EYQEVFGSEITQLMEHSKSCPRDVFTLEIPLAGGRTGKAAVTAILKDDNNLRG 540

Query: 556 LTMHD 560
             + D
Sbjct: 541 SLIRD 545



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/249 (7%), Positives = 62/249 (24%), Gaps = 13/249 (5%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI-LHIDPNNHIGDLLKR-QNTWY 144
           W ++    + E +    +  G    + +G    ++      +   + +   L   +    
Sbjct: 633 WKVNFE--VSEWNPGAEQIFGYSREEALGRNGIELLIPNTDLSYIHQLWAELSTNRGGRR 690

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
                   +G    +  +     +   +    G     +V             +  +++F
Sbjct: 691 STNENVRKDGKI--ILCEWYNTTLIDDDGNVVGVA--SLVQDVTELQRIVGELRASEERF 746

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPP-----PHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
             + E       +           SP         R     +      A   D  +    
Sbjct: 747 RQMAENIHEVFWMIDPNQKQILYVSPACEQIWGCSRQSLYENPQCLASAIHPDDRERVMS 806

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
            +  + ++    +      + +    +     + N+  E +  +      +     +E +
Sbjct: 807 FIEKNTQAEYDREYRILRPDGSICWIRDRAFPIYNDVGEIYRIVGIAEDITQRKLAEEFQ 866

Query: 320 NLTPETVDK 328
            +    V  
Sbjct: 867 KVAQSAVAA 875


>gi|32473151|ref|NP_866145.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
 gi|32397830|emb|CAD73831.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
          Length = 1637

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 139/739 (18%), Positives = 282/739 (38%), Gaps = 43/739 (5%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            +D    ++ ++ E+ + +       +G         +  D        L+R      +  
Sbjct: 769  LDDDLRVRRVTPEISRLLSIEPND-LGRSFESFIHPIQDD------QFLERVRQARDERV 821

Query: 149  LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                E +       + ALP Y RN E +G     ++    VD   RA    L  KF    
Sbjct: 822  ELEWEVSCRDSSYLVRALP-YLRNSEINGV----VIAFVDVDILRRAERDVLKFKFMADQ 876

Query: 209  EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
             I       +K K    +++          ++          +   K+    L  +    
Sbjct: 877  NIDALVLLDQKGKISYANRKMCDQLGYSNEEILGQLLSRFKSETDPKSFDDRLEKAHAKG 936

Query: 269  LPEQEDF-HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
                E +    +  ++  +     +    K+     +     SL    +    L  E V 
Sbjct: 937  GNLFESWLQQRDGTEFPVEVALTPVFLQGKQL--LFASIRDISLRKTHESQMRLLSEAVQ 994

Query: 328  KCPIPFFVYS----HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
                   +         + + N  F  +T +   + +    G +      + +DN     
Sbjct: 995  SAANGIVITDCSLEDHPISFVNKGFTDMTGFSEQEIL----GRNCRFLQGEHTDNE--TV 1048

Query: 384  VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
            + + R+     +    +   + N E             ++        G++ +  +    
Sbjct: 1049 LRIRRALGRGESVRELIKNYRKNGEPFWN-DLYITPVHDENGILTHFVGVQNDVTERIEA 1107

Query: 444  KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRKPFTVFLE 502
             R+ E     +  +L++T++G+  ++  G    +N   ++L GY     I+ K      +
Sbjct: 1108 ARQTETNERTIRLLLDSTAEGLFGLDVHGKCTFSNEKAARLLGYEHGSQIVGKELAELAQ 1167

Query: 503  QNTP---SVMNHYLTEILSLDLRQTLEK-ITLGSTKEEKLLSLRIIIKKLPFSS---CYS 555
               P         L  + ++   + + +       K+ +   +      +          
Sbjct: 1168 PCDPNGNPFEKDSLQILGAVRAGEAINRYDERFCRKDGESFPVEYWCHPIQEDGKIVGAV 1227

Query: 556  LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
            +T  DI    Q +N+L  AK  A+  +  KS FLA +SHE+RTPL+AI+GF+++++    
Sbjct: 1228 VTFVDIETRLQVENELREAKLAADAANEAKSHFLANMSHELRTPLSAILGFTKILQEDP- 1286

Query: 616  GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
                     EY + I R+G+ +L ++ D+LD+S+IE+ K       VSL E +++    +
Sbjct: 1287 ---DEGTIQEYLSTIQRNGDYLLRLLGDVLDLSRIEANKFTTATSSVSLGELLADIFETM 1343

Query: 676  QLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-- 732
            ++   + +  +    +  +PR I  D   ++QI +N+++NAI FTP G ++ +       
Sbjct: 1344 KMRTQDYQNTLHFDVSEPLPRTITTDSARLRQIMINLIANAIKFTPKG-RVEVVVRSEKI 1402

Query: 733  -SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
              +  ++L+V D G+G+ + +L    +PF Q   +   R  GTGLGL + K + +A  G 
Sbjct: 1403 DDDSFLLLKVIDDGIGIADEKLRTLFEPFVQADATISNRFGGTGLGLSITKRLTNALGGT 1462

Query: 792  FYIFSTPAKGTLIEIIFPL 810
              + ST  +G+   I  P+
Sbjct: 1463 IQVSSTEGEGSEFTIRLPV 1481



 Score = 99.3 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 59/499 (11%), Positives = 146/499 (29%), Gaps = 58/499 (11%)

Query: 89  IDAHGYLKEISEELPKTI----GNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144
           ID    +  +     + +    G  +  ++ M   ++   +       +   +K+Q+  +
Sbjct: 550 IDTDYRIIHVFPGANRYLTVPSGTPSDNILHMVPKELRASIGA----AVTQAIKQQSAVH 605

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            +    P++G +  +  +L   P +                         A    L +  
Sbjct: 606 YQGIPSPVDGPDHVL--ELIVEPYH---------------------VPKLASSCVLIQFK 642

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
           +       G +     +                +++  L +  +     L+     L TS
Sbjct: 643 ASEMRTAFGDALTTSNESTESEGTLLDFSTAAHSRIEDLEQELSFNRQNLQATIEELETS 702

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
            E      E+    N    +  +   ++          L  R +    A  D    L   
Sbjct: 703 NEELQATNEEMVASNEELQSTNEELQSVNEELYSVNAELQVRVNEVNEANADMVNLLATT 762

Query: 325 TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
            V       F+     +    P    L   +  D     G        P + D+  ++ V
Sbjct: 763 RVG----VVFLDDDLRVRRVTPEISRLLSIEPNDL----GRSFESFIHP-IQDDQFLERV 813

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
              R +R  +          +       +        N     +    ++ + +      
Sbjct: 814 RQARDERVELEWEVSCRDSSY-------LVRALPYLRNSEINGVVIAFVDVDIL------ 860

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           R+ E +V++   + +   D + +++++G I   NR +    GY  E+IL +  + F  + 
Sbjct: 861 RRAERDVLKFKFMADQNIDALVLLDQKGKISYANRKMCDQLGYSNEEILGQLLSRFKSET 920

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI--IIKKLPFSSCYSLTMHDIS 562
            P   +  L +  +          +    ++     + +      L        ++ DIS
Sbjct: 921 DPKSFDDRLEKAHAKGGNL---FESWLQQRDGTEFPVEVALTPVFLQGKQLLFASIRDIS 977

Query: 563 EWKQEKNKLSHAKKIAEKE 581
             K  ++++    +  +  
Sbjct: 978 LRKTHESQMRLLSEAVQSA 996



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 41/391 (10%), Positives = 112/391 (28%), Gaps = 13/391 (3%)

Query: 198 KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKN-----KVSSLTEYYAHKDD 252
           KR D +      +   + SV        S   PPP  R +N      V    +       
Sbjct: 491 KRRDVRLPIELRMPLANQSVSPVTPQTPSIVEPPPQRRNENLLEIYNVLLADKMPPSLVI 550

Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
                   +       L       + N+     K+   ++     ++ +  S  ++  + 
Sbjct: 551 DTDYRIIHVFPGANRYLTVPSGTPSDNILHMVPKELRASIGAAVTQAIKQQSAVHYQGIP 610

Query: 313 AYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTK---YKSVDDIEIAGGLSTL 369
           +  D  +++    V+   +P    S   + +               S +  E  G L   
Sbjct: 611 SPVDGPDHVLELIVEPYHVPKLASSCVLIQFKASEMRTAFGDALTTSNESTESEGTLLDF 670

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
             A      +  + +   R +             +    N   +      ++        
Sbjct: 671 STAAHSRIEDLEQELSFNRQNLQATIEELETSNEELQATNEEMVASNEELQSTNEELQSV 730

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
              +   + + ++   ++      + ++L  T  G+  ++ +  +      +S+L     
Sbjct: 731 NEELYSVNAELQVRVNEVNEANADMVNLLATTRVGVVFLDDDLRVRRVTPEISRLLSIEP 790

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
            D+  + F  F+           + +         +E     S ++   L   +   +  
Sbjct: 791 NDL-GRSFESFIHPIQDDQFLERVRQARDER----VELEWEVSCRDSSYLVRALPYLRNS 845

Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
             +   +   D+   ++ +  +   K +A++
Sbjct: 846 EINGVVIAFVDVDILRRAERDVLKFKFMADQ 876



 Score = 45.4 bits (106), Expect = 0.039,   Method: Composition-based stats.
 Identities = 16/148 (10%), Positives = 42/148 (28%), Gaps = 13/148 (8%)

Query: 86   TWNIDAHGYLKEISEELPKTIGNYA-FKMIGMRLCDVS-------DILHIDPNNHIGDLL 137
             + +D HG     +E+  + +G     +++G  L +++       +    D    +G + 
Sbjct: 1129 LFGLDVHGKCTFSNEKAARLLGYEHGSQIVGKELAELAQPCDPNGNPFEKDSLQILGAVR 1188

Query: 138  KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG 197
              +            +G +   P++    PI   + +  G                    
Sbjct: 1189 AGEAINRYDERFCRKDGESF--PVEYWCHPIQ-EDGKIVGA--VVTFVDIETRLQVENEL 1243

Query: 198  KRLDKKFSHLHEIKKGHSSVEKEKYDIF 225
            +         +E K    +    +    
Sbjct: 1244 REAKLAADAANEAKSHFLANMSHELRTP 1271


>gi|256829422|ref|YP_003158150.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256578598|gb|ACU89734.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 1131

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 131/757 (17%), Positives = 267/757 (35%), Gaps = 36/757 (4%)

Query: 71  ENTFVFDP-IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIG-MRLCDVSDILHID 128
           E+   F+     +   TW +DA G    +S      +G    +++G M   D+      +
Sbjct: 240 ESEDRFEQLAEHSRTVTWEVDAGGLFIYVSNASASVLGYAPEELVGCMSFFDLHPEDGRE 299

Query: 129 PNNHIG-DLLKRQNTWYG-KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHV 186
                  ++  R+  +   +      +G    + +     P+        G+RG      
Sbjct: 300 AFKSAAFEVFGRRGEFTNFENRALTRDGR--EIWLSTNGFPLLDGAGNLLGYRGNDT--D 355

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY 246
              + + R    + +   S + E          +      Q             ++    
Sbjct: 356 ITAEKEARTQLAQREAMLSSMLENLPVDFWARDKDGRGIIQSRLSKEHWGDFCSANFDAQ 415

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL---QNNSKESFEYL 303
             H  +  K +          ++ ++E     +            +             L
Sbjct: 416 SRHSHNAEKWKAKHDRLYAGETIEQEEVLVLTDGRHRIFHSMGAPIVMQGEVVGILGINL 475

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEI 362
                  + A  +    L+   +D  P   ++Y  +G L   N     LT Y   + +  
Sbjct: 476 DITERRYIEAQLERERVLSKAIIDSVPGLLYLYEQNGRLVRWNRMHCELTGYSDRE-LGA 534

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
              +    D P      A     +   +       A L T   +      + F       
Sbjct: 535 MHLMDWYRDDPASQQKVARAIERVL--EEGIGTEEAELQT--KDGRR---IPFFLTAVRL 587

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
           +    +   GI  +  + + ++  + +   +L   LEA+SDG+   N +   +  +    
Sbjct: 588 ELEGRIYFTGIGIDITERKRSEEALRLSEERLALALEASSDGLWDWNFQTGEVYFSPRYL 647

Query: 483 KLFGYPVE--DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
            + GY     ++    +   L  +          + +       LE        + + + 
Sbjct: 648 GMLGYDPGDLELNITGWEKLLHPDDFEKTKRTELDHIERGEPFALEFRLRNKAGDWQWVM 707

Query: 541 LRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
            R  + +   +        T  DI + K+ +N+L  AK+ AE  S  KS+FLA +SHEIR
Sbjct: 708 SRGKVVEWDAAGRPLRMVGTHVDIDQRKRMENELVKAKEAAEAASLAKSEFLANMSHEIR 767

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TPL  I+G  +++++       +           ++   +  +++D+LD+S++E+GKM +
Sbjct: 768 TPLNGIMGMIQLLESGAR----DEEQHRTCAMALQATGRLTRLLSDILDLSRVEAGKMQM 823

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAI 716
             EP +L +A+ +++ L    A +  +  R  F   +P  ++ D    +Q+ +N++ NA 
Sbjct: 824 RIEPFNLRDALGQSVDLFNPIAMQAGLEFRHHFDPALPEFVVGDSVRFQQVLMNLIGNAF 883

Query: 717 HFTPSGGQIIIST-----THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
            FT  G  + +         + +  V+  V D+G G+ +  L    +PF Q+        
Sbjct: 884 KFTTKGF-VAVEAHPLPSHESDSVRVLFSVADSGRGIEDAALSALFQPFSQVTRGFTRDH 942

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           +G GLGL + K ++    G   + S P  GT      
Sbjct: 943 QGAGLGLAITKRLIALMGGTMAVESEPGCGTTFSFSL 979



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/143 (11%), Positives = 44/143 (30%), Gaps = 4/143 (2%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           R +     +   + E +      ++  G+ +  + A + + GY  E+++       L   
Sbjct: 236 RSLRESEDRFEQLAEHSRTVTWEVDAGGLFIYVSNASASVLGYAPEELVGCMSFFDLHPE 295

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH----D 560
                       +     +         T++ + + L      L   +   L       D
Sbjct: 296 DGREAFKSAAFEVFGRRGEFTNFENRALTRDGREIWLSTNGFPLLDGAGNLLGYRGNDTD 355

Query: 561 ISEWKQEKNKLSHAKKIAEKESS 583
           I+  K+ + +L+  + +      
Sbjct: 356 ITAEKEARTQLAQREAMLSSMLE 378


>gi|119488833|ref|ZP_01621795.1| PAS/PAC Sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106]
 gi|119454994|gb|EAW36136.1| PAS/PAC Sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106]
          Length = 1205

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 136/834 (16%), Positives = 259/834 (31%), Gaps = 101/834 (12%)

Query: 47   DSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTI 106
             +F    F   +             +  +F+ I          D  G + + +    +  
Sbjct: 394  STFNSVVFIATDISEYKQAEQTLQRHALIFEQIYDG---VIMTDLTGRIIDWNPGAERMF 450

Query: 107  GNYAFKMIGMRLCDVSDIL-HIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAA 165
            G    +++G     V        P   + + +K+Q  W  + T      T       +  
Sbjct: 451  GYSHSEVVGKTSALVHYPEQTPMPTQTMLEHIKKQGYWLSEMTFIRENKTQGICDTIV-- 508

Query: 166  LPIYSRNREFSGFRGFGIVHVNRVDNDPR------------------------------- 194
            +PI+    E       G+ H                                        
Sbjct: 509  VPIFDHQGETVAV--IGVYHDISDRKQAELELQQYRDHLEYLVDQRTSQLEKSNAKLQRE 566

Query: 195  --------ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL--RMKNKVSSLT 244
                          + + + + +          E + I         +      +V +  
Sbjct: 567  IEARAILAEELLASEARLAGILDNANDAIISVNEAHQIILFNKGAEKIFGYQSEEVLNQA 626

Query: 245  EYYAHKDDVLKTEKYPLLTSEESSLPEQEDF-------HTINLNQYTKKQYFGTLQ---- 293
                       T    + T  + S   +             N  ++  +     LQ    
Sbjct: 627  LDLLLPRRFSATHCEHIKTFRKHSQTARNMGENREISGRRQNGQEFPAEASISRLQLGNT 686

Query: 294  -----NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPS 347
                      S    + +          E E       +  P+  F     GN  Y N  
Sbjct: 687  ITYTAILRDISERVAAFKERQQAETALRESEQRYATLAEVSPVGIFRSDAVGNCLYVNER 746

Query: 348  FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
            +  +        +   G + TL        +  I+       DR       R        
Sbjct: 747  WCQIAGLSLEQSLGQ-GWIQTLHPDD---RDRVIQAWKQAVCDRCSFQLEYRFQRT---D 799

Query: 408  ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
                 +      + +   E     G   +  D +  +  ++    +  S+LE     +  
Sbjct: 800  GMITWVFGQAVVEIDIKGEIKGFVGSITDINDRKQAEATLQESERRWRSLLENVHLAVVG 859

Query: 468  INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS-VMNHYLTEILSLDLRQTLE 526
            +N +GII   N    +L GY   ++L + +       +    +  Y  EIL   L    +
Sbjct: 860  LNDQGIIDYVNPFFLELTGYTQTELLGQDWFTTFLPASQRSPVYQYFQEILKQQLNSYYQ 919

Query: 527  KITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
               L  + EEK+++      +              DI+E    +                
Sbjct: 920  NTILTKSGEEKIIAWNNTRLQSLQGDALGTMSIGEDITERYAIE--------------RM 965

Query: 585  KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
            K++F++ VSHE+RTPLTAI G    + +       +PR          S   ++ +VND+
Sbjct: 966  KNEFISVVSHELRTPLTAIHGAL-NLLSTGLVAPESPRGQHVIKIAAESTERLVRLVNDI 1024

Query: 645  LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704
            L++ ++E G++ L    V+  + +  A   +Q+ AN   I +      +I    AD   +
Sbjct: 1025 LELERLECGRIKLVKHCVNAAQLLRVAQDQMQVMANRTGIKLEI-LPQDI-EFEADGDRM 1082

Query: 705  KQIALNILSNAIHFTPSGGQIIISTTHT--------SNEEVILRVRDTGVGMTNYELEKA 756
             Q+  N++SNAI F+ SG  I +S                V+  VRD G G+   ++E  
Sbjct: 1083 IQVLTNLISNAIKFSDSGSTIQLSVEAEWRTFGGETPIASVLFCVRDQGRGIPLEKMESI 1142

Query: 757  MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             + F Q+  S   +  GTGLGL + +++V+ + G  ++ S   + +      P+
Sbjct: 1143 FERFQQVDASDSRQKGGTGLGLAICRSIVEQHGGIIWVESVLDQESCFYFSIPV 1196



 Score =  105 bits (261), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 43/366 (11%), Positives = 114/366 (31%), Gaps = 43/366 (11%)

Query: 242 SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301
                + H +D  +         E+     +  F   +   +  +     + ++  +  E
Sbjct: 210 GFWATHIHPEDACRIFAEFPRVFEQGKHSYEYRFLHGDGTYHWIQDELRLVTDSQGKPLE 269

Query: 302 ----YLSHRNHPSLSAYFDEGENLTPETVDKC-----PIPFFVY---SHGNLFYANPSFL 349
               ++             + E        +        P ++Y     G + +AN ++ 
Sbjct: 270 IVGYWIDINVRKQAQFALKDSEIRYRSLAQRLHSITSNAPIYIYELDRQGRVLFANRTYE 329

Query: 350 LLTKYKSVDDI-------EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT 402
            +T+ + + ++       E    ++ +++    +        ++  S     A +A+L  
Sbjct: 330 NVTQEQVLGNLLIDCFPPEKQPNITQIIEQVFTTGQVQSLEYIIPNSTGEIRAYTAQLAP 389

Query: 403 IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
           I W      ++ F                 I  +  + +  ++ ++        I E   
Sbjct: 390 I-WMNSTFNSVVF-----------------IATDISEYKQAEQTLQRH----ALIFEQIY 427

Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522
           DG+ + +  G I+  N    ++FGY   +++ K   +        +    + E +     
Sbjct: 428 DGVIMTDLTGRIIDWNPGAERMFGYSHSEVVGKTSALVHYPEQTPMPTQTMLEHIKKQGY 487

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEK 580
              E   +   K + +    ++                HDIS+ KQ + +L   +   E 
Sbjct: 488 WLSEMTFIRENKTQGICDTIVVPIFDHQGETVAVIGVYHDISDRKQAELELQQYRDHLEY 547

Query: 581 ESSHKS 586
               ++
Sbjct: 548 LVDQRT 553


>gi|149177491|ref|ZP_01856094.1| sensory box histidine kinase/response regulator [Planctomyces maris
           DSM 8797]
 gi|148843641|gb|EDL58001.1| sensory box histidine kinase/response regulator [Planctomyces maris
           DSM 8797]
          Length = 1362

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 143/807 (17%), Positives = 280/807 (34%), Gaps = 52/807 (6%)

Query: 31  DNGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNID 90
           D  F +  S ++    +  + +  T  N   +S T   D    F+       +     +D
Sbjct: 127 DTKFGSSSSFRDLWIVN-PQGTVITATNDAYLSKTYAGD--PGFLEGKEHPRLDLPQEVD 183

Query: 91  AHGYLKE-----ISEELPKTIGNYAFKMIGMRLCDVSD-ILHIDPNNHIGDLLKRQNTWY 144
             G         ++ E    +G     +    L ++    + +     +    ++ +   
Sbjct: 184 --GRYLTYLVAPMNSEAGNLLGVLMVWLDVTPLKEILTNRVGLQKTGDLLVATQQGDHVR 241

Query: 145 GKTTLWPIEGTNLYVP---IDLAALPIYSRNR----EFSGFRGFGIVHVNRVDNDPRAL- 196
                 P +     VP   +   A  +   +      +SG R            D  A  
Sbjct: 242 Y--LFQPRDSEVWSVPISDVPAMAKALQDESGSEVLNYSGDRVLVSYRPVDYQPDLEAPW 299

Query: 197 ---GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253
               K   ++        +    + +     F         R        T         
Sbjct: 300 GMIAKISLEEAYAPVTYLRKVLLLLQVGLMFFGMAVSFLVAR------RFTRPVLGLATS 353

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
                   L          E         +  ++   + +       +  +     +   
Sbjct: 354 ASKIAKGNLDVRVPISSSDEVGMLGAAFNHMAEELSASREELEDRIEQRTAELK--ASQK 411

Query: 314 YFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIA--GGLSTLL 370
                  +    +D       V    GN  + NP+   +      +             L
Sbjct: 412 QLRRQSQILQSILDSMGDGVIVADQDGNSVFWNPAAEQIVGIGPQNVDPDKWSQIYGCYL 471

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
              K    +   P+       +       L          +++T  P    N   E    
Sbjct: 472 ADGKTMCPSRDLPLARAMRGESLDEVVLYLENPDIPEGTWISVTARPL--RNDRGELRGG 529

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490
             +  +  ++R N+ +++    +  +IL  T +    IN + +I   N      FG+   
Sbjct: 530 VIVMRDITESRANQEELQSRDEKNRAILATTHESYIAINEKSLICEWNEQAEVTFGWSYA 589

Query: 491 DILRKPFTVFLEQNTPSVMNHY-LTEILSLDLRQTLEK--ITLGSTKEEKLLSLRIIIKK 547
           + + +     +      + + + +   L       L K        ++     + + I  
Sbjct: 590 EAIGRSLEETIIPERYWLQHTHGIEHYLRSGEGPFLNKRLELSAMHRDGHEFPVELTITP 649

Query: 548 LPFSSCYS--LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
           +P  S +     +HDI+  KQ + +L  AK+ AE  S  KS FLA +SHEIRTP+ A+IG
Sbjct: 650 VPQGSGFLFAAFIHDITVEKQAEEELRQAKEAAEAASRAKSAFLATMSHEIRTPMNAVIG 709

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
            +E++ +       N    EY   +  SG  +L ++ND+LD SKIE+G+ +L   P  L 
Sbjct: 710 MTELLLDTDL----NSTQREYLTMVQESGESLLSVINDILDFSKIEAGRFDLEKAPFHLR 765

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ 724
           E + + +  + + A+ K + +      ++P  I+ D   ++QI +N++ NAI FT  G +
Sbjct: 766 ENLGDTMRSLAVRAHHKHLELAFHLDADVPDTIVGDRFRLRQIIVNLVGNAIKFTEEG-E 824

Query: 725 IIISTTHT----SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
           I++   +     +  ++   VRDTG+G+   + ++  + F Q+  S   R  GTGLGL +
Sbjct: 825 IVLDVNYDFQSKNELQLHFVVRDTGIGIPEDKQQQIFQAFEQVDESMARRFSGTGLGLAI 884

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEII 807
           A  +++   GK ++ S   KG+     
Sbjct: 885 ASRLIEMMGGKIWVNSEVGKGSEFHFT 911


>gi|307151277|ref|YP_003886661.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7822]
 gi|306981505|gb|ADN13386.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7822]
          Length = 1719

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 122/769 (15%), Positives = 249/769 (32%), Gaps = 67/769 (8%)

Query: 85   FTWNIDA--HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNT 142
            F  ++D         ++    + +G    ++ G    +           H  D L  + T
Sbjct: 982  FVIDVDENEDFRFVSLNPAHQRAVGFSLSEIYGKTPQEAQVPAWEAITQHYRDCLAARTT 1041

Query: 143  WYG-KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
                +        T+ Y  +     P+ +       FR  G               K+  
Sbjct: 1042 ISYQENVFLHGRETSWYTTLT----PLCNLEGRI--FRIIGTALEITELKRTERALKQAL 1095

Query: 202  KKFSHLHEIKKGHSSVEKEKYDIFSQQ------SPPPHLRMKNKVSSLTEYYAHKDDVLK 255
            ++     E          + + +                 +K+       +   +D  L 
Sbjct: 1096 QQIDAHFENSPLGIVQWDKSFHVLRWSKQAEQMFGWSAEEVKSHFWQDWNFVHREDQDLV 1155

Query: 256  -TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
                   +    ++        T        +     + +        LS     +    
Sbjct: 1156 NAVTTAFMNGLITNQTIINRNVTKEGRVMICQWDSSAVFDEMGNLVSVLSFVQDITERKQ 1215

Query: 315  FDEGEN----LTPETVDKCPIPFFVYSHGN--LFYANPSFLLLTKYKSVDDIEIAGGLST 368
             +        L     ++     F+       +   N   + L +  S DD+    G S 
Sbjct: 1216 AELELQKQKELRETIFNESTDAIFLVDPHTLLITDCNRRAVELFEVPSKDDLIGTEGRS- 1274

Query: 369  LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
                        I+ +     ++   +      T                 K     +  
Sbjct: 1275 --LQRYPFTTEEIEQITQEMDEKGFWSLELEYIT-----GKGNLFWGNIAAKPFVIADMR 1327

Query: 429  PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
                   +    +  +  +     +     E  + G+A++N     L  NR++ ++ GY 
Sbjct: 1328 VNLIRVTDINTRKRAQEALRESEERFRRAFEDAAIGMALVNLHRRFLKVNRSLCEMIGYS 1387

Query: 489  VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
              ++LR  F      +        L ++L      T +       +E +L+     +  +
Sbjct: 1388 EAELLRLTFEDITHPDDLETNLAALEQMLK-GEYSTYQVEKRYLHQEGRLIWAISSVSLI 1446

Query: 549  PFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
                     Y + + DISE  +                  K +F++ VSHE+RTPLTAI 
Sbjct: 1447 KDQDHLPLYYVVQIQDISERHKL--------------DRMKDEFISIVSHELRTPLTAIR 1492

Query: 605  GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
            G   ++++                    +   +  +VND+LD+ ++ESGK  L  +P  +
Sbjct: 1493 GSLGILESGVLNDEPL-TANRMLKVALNNSERLARLVNDILDLERLESGKTELVMKPCQV 1551

Query: 665  DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724
             + + +A+  V+  AN   I I  +      ++ AD  ++ Q  +N+L N I F+  G  
Sbjct: 1552 SDLMEQAVESVEAIANLASIRINFTAVEA--QVWADFDAIVQTLINLLGNGIKFSDPGSM 1609

Query: 725  IIISTTHTSNE---------------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
            I +    ++ E                ++  + D G G+ + +LE     F Q+  S   
Sbjct: 1610 IWLKAQRSNGEWGLQKSENFPHLGSSYLLFSIEDQGRGIPSDKLESIFGRFQQVDVSDSR 1669

Query: 770  RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
            +  GTGLGL + K++++ + GK ++ S   +G++     PL++   PHD
Sbjct: 1670 QKGGTGLGLAICKSIIEQHNGKIWVESVVGQGSIFYFTLPLWEQEPPHD 1718



 Score =  108 bits (270), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 53/511 (10%), Positives = 139/511 (27%), Gaps = 41/511 (8%)

Query: 93  GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPI 152
           GY  +++E   +       ++IG     ++ I     +  +G+ L++     G    +  
Sbjct: 470 GYYLDVNESFLEFSEYTREEIIGKTAAQLNFIADAQQDAALGEKLQKYGVVKGFEFDYRT 529

Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212
           +     +   L ++ +   + E    R   I              +    +   +     
Sbjct: 530 K--TGKLGTALLSIELVELDGEL---RVLTISKDITDRKQLEIALQASQTQLDDILNYCV 584

Query: 213 GHSSVEKEKYD-IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP- 270
              +  +   D  +S        +  +  S+          V +         E      
Sbjct: 585 AAITSFRVLADKNWSINYLSAGCQAISGYSAQELKADKDLWVARIAPEDWQAIEAELFAN 644

Query: 271 --------EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
                    +  F+  N       Q   +  +  +  +   +  +  S     +E    +
Sbjct: 645 IFAQQVGTYEYRFYHKNGTLRWFSQTNSSRWDEKQNCWIVTAVTSDISERKQTEEALQKS 704

Query: 323 PETVDKCPIP-------FFVYSHG--NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
                +              Y  G     Y +P+F  + +    + ++ A    ++    
Sbjct: 705 EFRFQQLASASPGVIYTVVEYPDGPVRYEYVSPAFEEIHEVPLTEILKDA----SITINQ 760

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
              D+ +     +  S +           I         +      +  +  E +  +G+
Sbjct: 761 MHPDDLSGYQQAVVESLKEMQPFR-HEWRIITPSGQVKWIQAHSRPERRENGE-IAWHGV 818

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII--NREG--IILSTNRAVSKLFGYPV 489
             +  + +  + ++      LC         I  I    +G       + A   +     
Sbjct: 819 VLDITEKKQVEAQLRKTEQWLCQFNYHAPSVIYTIVQEADGLIRFEYISSACEAINELTA 878

Query: 490 EDIL--RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
           E +L         +  +  +     +    S +  +  +      T   K+  L+   + 
Sbjct: 879 EQVLENAHVLLELIHPDDRATYGEAV--AKSAESLELFDHQWRIITPSGKVKWLQGKSQP 936

Query: 548 LPFSSCYSL---TMHDISEWKQEKNKLSHAK 575
              S+        + DI+E KQ + +L   +
Sbjct: 937 ERRSNGAIAWYGVVIDITERKQIEARLQEQE 967



 Score =  102 bits (254), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 53/520 (10%), Positives = 137/520 (26%), Gaps = 43/520 (8%)

Query: 90   DAHGYLKEISEELPKTIGNYAFKMIGMR---LCDVSDILHIDPNNHIGDLLKRQNTWYGK 146
            D +  +  +S       G  A ++   +   +  ++          +   +  Q     +
Sbjct: 595  DKNWSINYLSAGCQAISGYSAQELKADKDLWVARIAPEDWQAIEAELFANIFAQQVGTYE 654

Query: 147  TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
               +   GT  +     ++   +   +         +              ++ + +F  
Sbjct: 655  YRFYHKNGTLRWFSQTNSSR--WDEKQNCWIVT--AVTSDISERKQTEEALQKSEFRFQQ 710

Query: 207  LHEIKKGH----SSVEKEKYDIFSQQSPPPHLRMKNKV-----SSLTEYYAHKDDVLKTE 257
            L     G                        +           +S+T    H DD+   +
Sbjct: 711  LASASPGVIYTVVEYPDGPVRYEYVSPAFEEIHEVPLTEILKDASITINQMHPDDLSGYQ 770

Query: 258  KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
            +  + + +E      E        Q    Q     +        +       +     + 
Sbjct: 771  QAVVESLKEMQPFRHEWRIITPSGQVKWIQAHSRPERRENGEIAWHGVVLDITEKKQVEA 830

Query: 318  GENLTPETV----DKCPIPFF--VYSHG---NLFYANPSFLLLTKYKSVDDIEIAGGLST 368
                T + +       P   +  V          Y + +   + +  +   +E A  L  
Sbjct: 831  QLRKTEQWLCQFNYHAPSVIYTIVQEADGLIRFEYISSACEAINELTAEQVLENAHVLLE 890

Query: 369  LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
            L+       ++              +        I         +      +       +
Sbjct: 891  LI-----HPDDRATYGEAVAKSAESLELFDHQWRIITPSGKVKWLQGKSQPERRSNG-AI 944

Query: 429  PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN----REGIILSTNRAVSKL 484
               G+  +  + +  + +++ + + L SI E   + I +I+     +   +S N A  + 
Sbjct: 945  AWYGVVIDITERKQIEARLQEQEIFLRSIYEGVEEPIFVIDVDENEDFRFVSLNPAHQRA 1004

Query: 485  FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
             G+ + +I  K           ++  HY   + +       E + L      +  S    
Sbjct: 1005 VGFSLSEIYGKTPQEAQVPAWEAITQHYRDCLAARTTISYQENVFLH----GRETSWYTT 1060

Query: 545  IKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEK 580
            +  L            T  +I+E K+ +  L  A +  + 
Sbjct: 1061 LTPLCNLEGRIFRIIGTALEITELKRTERALKQALQQIDA 1100



 Score = 78.1 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 39/307 (12%), Positives = 81/307 (26%), Gaps = 25/307 (8%)

Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSF 348
           +L   S         ++   +     + E    +    CP P  + S   G     N SF
Sbjct: 420 SLLTQSFNLTAAQLQQSFEQIKTALQQSEEKFTKVFRSCPDPISINSLMGGYYLDVNESF 479

Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
           L  ++Y   + I         +   +       K                         +
Sbjct: 480 LEFSEYTREEIIGKTAAQLNFIADAQQDAALGEKLQKYGVVKGFEFDYR------TKTGK 533

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI--- 465
              A+  I   + +     +    I  +  D +  +  ++    QL  IL      I   
Sbjct: 534 LGTALLSIELVELDGE---LRVLTISKDITDRKQLEIALQASQTQLDDILNYCVAAITSF 590

Query: 466 -AIINREGIILSTNRAVSKLFGYPVEDIL---RKPFTVFLEQNTPSVMNHYLTEILSLDL 521
             + ++   I   +     + GY  +++             ++  ++       I +   
Sbjct: 591 RVLADKNWSINYLSAGCQAISGYSAQELKADKDLWVARIAPEDWQAIEAELFANIFAQ-- 648

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKI 577
            Q          K   L                    +    DISE KQ +  L  ++  
Sbjct: 649 -QVGTYEYRFYHKNGTLRWFSQTNSSRWDEKQNCWIVTAVTSDISERKQTEEALQKSEFR 707

Query: 578 AEKESSH 584
            ++ +S 
Sbjct: 708 FQQLASA 714



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/365 (8%), Positives = 103/365 (28%), Gaps = 31/365 (8%)

Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP-----FFVYSHGNLFYAN 345
            L    +         +   L       +    + ++ C             + ++ Y +
Sbjct: 545 ELDGELRVLTISKDITDRKQLEIALQASQTQLDDILNYCVAAITSFRVLADKNWSINYLS 604

Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405
                ++ Y + +           +         A     ++                  
Sbjct: 605 AGCQAISGYSAQELKADKDLWVARIAPEDWQAIEAELFANIFAQQVGTYEYRFY-----H 659

Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465
                   +     + ++         +  +  + +  +  ++    +   +  A+   I
Sbjct: 660 KNGTLRWFSQTNSSRWDEKQNCWIVTAVTSDISERKQTEEALQKSEFRFQQLASASPGVI 719

Query: 466 AII--NREG--IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL-D 520
             +    +G       + A  ++   P+ +IL K  ++ + Q  P  ++ Y   ++    
Sbjct: 720 YTVVEYPDGPVRYEYVSPAFEEIHEVPLTEIL-KDASITINQMHPDDLSGYQQAVVESLK 778

Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL---TMHDISEWKQEKNKLSHAKKI 577
             Q         T   ++  ++   +     +        + DI+E KQ + +L   ++ 
Sbjct: 779 EMQPFRHEWRIITPSGQVKWIQAHSRPERRENGEIAWHGVVLDITEKKQVEAQLRKTEQW 838

Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY-ANYIDRSGNL 636
             + + H    +  +  E           ++ +    +         E  A  +  + ++
Sbjct: 839 LCQFNYHAPSVIYTIVQE-----------ADGLIRFEYISSACEAINELTAEQVLENAHV 887

Query: 637 VLDIV 641
           +L+++
Sbjct: 888 LLELI 892


>gi|283850587|ref|ZP_06367875.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283574158|gb|EFC22130.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 1093

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 106/631 (16%), Positives = 221/631 (35%), Gaps = 26/631 (4%)

Query: 190 DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH 249
             +                ++             +F Q       R    +    +    
Sbjct: 325 SEERYRELVENAGSVIVRLDLLGRVVFCNAFGQRLFGQTQDQMFGRTIASLIDPPDDDEA 384

Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
           +                 +   +      N            L+  S ++ E L      
Sbjct: 385 ESWDDILADVAGSAIGTRAFDRRHRTR--NGEAAWLAWSLRALRAPSGQAAEILCVGADI 442

Query: 310 SLSAYFDEGENLTPE----TVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAG 364
           +     +E    +               + +    +  Y +P +L +  +        A 
Sbjct: 443 TERKQVEEALAASEARYALVTRGANDGIWDWDLVTDTVYFSPRYLEILGFSPDAMPPRAE 502

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
             + L+      D + +       +D          + ++    +   +        +++
Sbjct: 503 TWTKLIHPD---DADIVLRENKRCADGEVDNFVVE-YRMRHKDGSYRWILGRGASLRDKY 558

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI-AIINREGIILSTNRAVSK 483
              +   G   +    + ++  +     QL  I   +  GI     R+G IL  N   ++
Sbjct: 559 GRIVRMAGTHTDVTRRKRDEEALRESQDQLAKIFRYSPVGISVTTRRDGRILDVNETGAR 618

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL--SL 541
           +FG+   D++ +  T       P      + E+ +      + K      K    +    
Sbjct: 619 MFGHNKADVIGRTSTEIGLWARPEDRGALMAEMAAAG--SVVAKELDLRHKNGSPVVTLY 676

Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
             +  ++   S     + DI+E K  +  L  +K+ AE  +  KS+FL+ +SHEIRTP+ 
Sbjct: 677 SAVPIQVYGESGILAVLVDITERKAMEQALRRSKEAAETANRAKSEFLSTMSHEIRTPMN 736

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
            I+G + V+      P    ++ E    I+ +G  +L ++ND+LD+S+IE+G + +  + 
Sbjct: 737 TILGMAGVLAASDLPP----KHTEALRAIEAAGGTLLALLNDILDLSQIEAGGLIMEEKA 792

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTP 720
             +     +   +++  A  K + +R      +P R+      ++Q+ +N+L NA+ FT 
Sbjct: 793 CDIVALAGKLTDMMRPDAARKGLALRLDVQGTLPARLSCSPDRIRQVLVNLLGNAVKFTD 852

Query: 721 SGGQIIISTTHTS----NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
            G +I++             + L VRDTG+G+   +       F Q+  S      G GL
Sbjct: 853 QG-EIVLELGREDHADTGAWLRLAVRDTGIGIPADKQTVIFDRFTQVNASASRHYGGVGL 911

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           GL +   +V    G   + STP +G++  + 
Sbjct: 912 GLAICNKLVHMMGGSIRVDSTPGQGSVFTVS 942



 Score =  103 bits (258), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 29/383 (7%), Positives = 83/383 (21%), Gaps = 31/383 (8%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK-----RQNT 142
            +D  G +   +    +  G    +M G  +  + D    D      D+L         T
Sbjct: 342 RLDLLGRVVFCNAFGQRLFGQTQDQMFGRTIASLIDPPDDDEAESWDDILADVAGSAIGT 401

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
                      G      +  +   + + + +        +                 + 
Sbjct: 402 RAFDRRHRTRNGEAA--WLAWSLRALRAPSGQ--AAEILCVGADITERKQVEEALAASEA 457

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPP-------PHLRMKNKVSSLTEYYAHKDDVLK 255
           +++ +               D               P        +     +    D++ 
Sbjct: 458 RYALVTRGANDGIWDWDLVTDTVYFSPRYLEILGFSPDAMPPRAETWTKLIHPDDADIVL 517

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH----RNHPSL 311
            E       E  +   +      + +         +L++                     
Sbjct: 518 RENKRCADGEVDNFVVEYRMRHKDGSYRWILGRGASLRDKYGRIVRMAGTHTDVTRRKRD 577

Query: 312 SAYFDEGENLTPETVDKCPIPFFVY--SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
                E ++   +     P+   V     G +   N +   +  +   D I        L
Sbjct: 578 EEALRESQDQLAKIFRYSPVGISVTTRRDGRILDVNETGARMFGHNKADVIGRTSTEIGL 637

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
              P+       +      +  + +A    L     N    + +      +         
Sbjct: 638 WARPEDRGALMAE----MAAAGSVVAKELDLR--HKNGSPVVTLYSAVPIQVYGES---G 688

Query: 430 QNGIEPEDVDTRINKRKMEIEVM 452
              +  +  + +  ++ +     
Sbjct: 689 ILAVLVDITERKAMEQALRRSKE 711



 Score = 81.2 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 50/440 (11%), Positives = 117/440 (26%), Gaps = 35/440 (7%)

Query: 166 LPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF 225
            P +++    +G +    +    V  D              L  I   +  + + K  + 
Sbjct: 38  RPAFAQTGADAGPQP---LRHLTVVLDKDYPPYVFQTPEGGLQGILVDYWRLWEAKNGLP 94

Query: 226 SQQSPPPHLRMKN-KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYT 284
               P      ++  +    +      +     KY L +   +++ +   F   +L   +
Sbjct: 95  VTLLPMEWNAAQDFMLQGKADVIDTLFETEARLKYYLFSEGYTTI-DVPVFVQKDLGGLS 153

Query: 285 KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFY 343
             +         K     +       + +      +     V         V+       
Sbjct: 154 DAESLRGFPVGVKAGDASVGRLRDLDILSLVP--FDSYEALVRAAGDGRVTVFCADKP-- 209

Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR---TCIAASARL 400
             P+   L K+   DD  +A    TL               +L   +        A    
Sbjct: 210 --PALHYLYKFGLEDDFRLAF---TLYSGQFHRAVRKGDAALLQLVEDGFSRITPAEYEA 264

Query: 401 HTIQWNREN-SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK---MEI------- 449
              +W   +   + T      A           +    V  R  +R+   ++        
Sbjct: 265 IDKKWRGTSLFQSATVRYVLLALVAVAAAALVLLSINAVLRRTVRRQTGKLQELLAAVGQ 324

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
              +   ++E     I  ++  G ++  N    +LFG   + +  +     ++       
Sbjct: 325 SEERYRELVENAGSVIVRLDLLGRVVFCNAFGQRLFGQTQDQMFGRTIASLIDPPDDDEA 384

Query: 510 N--HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISE 563
                +   ++     T        T+  +   L   ++ L   S           DI+E
Sbjct: 385 ESWDDILADVAGSAIGTRAFDRRHRTRNGEAAWLAWSLRALRAPSGQAAEILCVGADITE 444

Query: 564 WKQEKNKLSHAKKIAEKESS 583
            KQ +  L+ ++      + 
Sbjct: 445 RKQVEEALAASEARYALVTR 464



 Score = 55.0 bits (131), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 25/259 (9%), Positives = 65/259 (25%), Gaps = 13/259 (5%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150
             G + +++E   +  G+    +IG    ++      +    +   +    +   K    
Sbjct: 605 RDGRILDVNETGARMFGHNKADVIGRTSTEIGLWARPEDRGALMAEMAAAGSVVAKELDL 664

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGF-GIVHVNRVDNDPRALGKRLDKKFSHLHE 209
             +  +  V +  +A+PI     +  G  G   ++             +R  +     + 
Sbjct: 665 RHKNGSPVVTLY-SAVPI-----QVYGESGILAVLVDITERKAMEQALRRSKEAAETANR 718

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
            K    S    +              +           A +           L ++   L
Sbjct: 719 AKSEFLSTMSHEIRTPMNTILGMAGVLAASDLPPKHTEALRAIEAAGGTLLALLNDILDL 778

Query: 270 PEQEDFHTINLN-----QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
            + E    I             +    ++ ++      L      +L A      +   +
Sbjct: 779 SQIEAGGLIMEEKACDIVALAGKLTDMMRPDAARKGLALRLDVQGTLPARLSCSPDRIRQ 838

Query: 325 -TVDKCPIPFFVYSHGNLF 342
             V+           G + 
Sbjct: 839 VLVNLLGNAVKFTDQGEIV 857


>gi|322418617|ref|YP_004197840.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
 gi|320125004|gb|ADW12564.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
          Length = 1224

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 141/779 (18%), Positives = 258/779 (33%), Gaps = 93/779 (11%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           DA G L  ++      IG            D           +    L  +     +   
Sbjct: 107 DAQGRLLAVTPLEKNLIGKDY------SFRD-----------YYQTALHTRKPVISEPF- 148

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRG---------------------------FG 182
             +       P     +P+  R    +G  G                           F 
Sbjct: 149 --VSTQEHRHPTIAFVVPVLDRGGALAGMIGGMIDLYQDNFLGKLAHARVGKSGYLYLFN 206

Query: 183 IVHVNRVDNDPRALGKR-LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS 241
                 +  D + + K  L    + L +          E       QS     R+K+   
Sbjct: 207 TRRTIIMHPDQQRILKTDLPPGANRLLDQAIDGFEGSGETVTSHGLQSLTSFKRLKSMEW 266

Query: 242 SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE-------DFHTINLNQYTKKQYFGTLQN 294
            L   +   +      +  LL +   +                +     T  ++   + +
Sbjct: 267 ILAASFPQVEAYAPAREAKLLLALGLATALAASVLVCFFFVRRLTAPLLTFIRHVEGISD 326

Query: 295 NSKESFEYLSHRNHP------------SLSAYFDEGENLTPETVDKCPIPFFV-YSHGNL 341
             +E                              E        +D+ P+   V    G++
Sbjct: 327 QERELEPVAIQTGDEIGTLARAFNRMIQELRRQKESARELRLAIDQAPVTVMVTDRDGSI 386

Query: 342 FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401
            Y NP+F  +T Y + + +         L             +              R  
Sbjct: 387 EYVNPNFTKVTGYSAEEALGENP----RLVKSGWHPREFYAEMWQTVLSGREWRGEMRNK 442

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
                  +    +        +  E      ++ +    +  +  +     ++  +LE+T
Sbjct: 443 R---KNGDLYWESASISSVKGESGEIRNFVAVKEDITQRKRAEEALIRSDERIRLLLEST 499

Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPV-EDILRKPFTVFLEQNTPSVMNHYLTEI---- 516
           ++ I  ++  G     N A ++L GYP  E++L K   + +  ++P    + + +     
Sbjct: 500 AEAIFGMDLLGNCTFANHACARLLGYPGTEELLGKNMHLLIHHSSPDGTPNPVQKCPLYR 559

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSH 573
           +    +       +    +    ++                 +T  DISE K+ + +L  
Sbjct: 560 VLRGEQGLHNDDQVFWRADGTSFAVEYWSYPQLQDGELVGGVVTFFDISERKRAEEELRR 619

Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
           A + AE  +  KS+FLA +SHEIRTP+ A +G   ++K        + +  EY      +
Sbjct: 620 ATEAAEAATRAKSEFLANMSHEIRTPMNAALGMLYLLKQTGL----SDQQKEYLEKAQSA 675

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693
            +L+L ++ND+LD SK E+GKM L   P  LD  +S+  ++      EK I         
Sbjct: 676 SDLLLRVINDILDFSKAEAGKMALEQIPFRLDTVLSDLDNVASAILGEKEIEFGAYVGEG 735

Query: 694 IPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTH----TSNEEVILRVRDTGVGM 748
           +P +L  D   + Q+ LN+  NAI FT  G ++ +          +  +   V DTG+GM
Sbjct: 736 VPEVLVGDPLRLGQVLLNLAGNAIKFTEKG-KVEVEIALLALEEKDATLRFSVTDTGIGM 794

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
              + E    PF Q  NS   R  GTGLGL + + +V    G+ ++ S P +G+    I
Sbjct: 795 DAEQQEALFTPFTQADNSTTRRYGGTGLGLAICRELVQLMGGQMWVESEPGRGSSFSFI 853



 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/134 (11%), Positives = 31/134 (23%), Gaps = 9/134 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV---SDILHIDPNNHIGDLLKRQNTWYG 145
            D  G ++ ++    K  G  A + +G     V              +   +     W G
Sbjct: 380 TDRDGSIEYVNPNFTKVTGYSAEEALGENPRLVKSGWHPREF--YAEMWQTVLSGREWRG 437

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +       G         +   +   + E   F    +               R D++  
Sbjct: 438 EMRNKRKNGDLY--WESASISSVKGESGEIRNF--VAVKEDITQRKRAEEALIRSDERIR 493

Query: 206 HLHEIKKGHSSVEK 219
            L E          
Sbjct: 494 LLLESTAEAIFGMD 507



 Score = 45.8 bits (107), Expect = 0.033,   Method: Composition-based stats.
 Identities = 19/222 (8%), Positives = 59/222 (26%), Gaps = 13/222 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNY-AFKMIGMRLCDVSDILHIDPNNH------IGDLLK 138
            + +D  G     +    + +G     +++G  +  +      D   +      +  +L+
Sbjct: 503 IFGMDLLGNCTFANHACARLLGYPGTEELLGKNMHLLIHHSSPDGTPNPVQKCPLYRVLR 562

Query: 139 RQ-NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG 197
            +          W  +GT+    ++  + P   ++ E  G  G                 
Sbjct: 563 GEQGLHNDDQVFWRADGTSFA--VEYWSYPQL-QDGELVG--GVVTFFDISERKRAEEEL 617

Query: 198 KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257
           +R  +        K    +    +       +      +K    S  +    +     ++
Sbjct: 618 RRATEAAEAATRAKSEFLANMSHEIRTPMNAALGMLYLLKQTGLSDQQKEYLEKAQSASD 677

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
               + ++     + E           +     +  +N   +
Sbjct: 678 LLLRVINDILDFSKAEAGKMALEQIPFRLDTVLSDLDNVASA 719


>gi|20092182|ref|NP_618257.1| sensory transduction histidine kinase [Methanosarcina acetivorans
            C2A]
 gi|19917410|gb|AAM06737.1| sensory transduction histidine kinase [Methanosarcina acetivorans
            C2A]
          Length = 1447

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 130/730 (17%), Positives = 261/730 (35%), Gaps = 37/730 (5%)

Query: 96   KEISEELPKTIGNYAFKMIGM--RLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPI 152
               S+E+ +  G    + +               +   N +   L  +        +   
Sbjct: 731  LYWSDEIYRIFGCTPQEFVATYDTFLSYVHPDDSESVENAVKGALDGKPYSIDHRIIL-- 788

Query: 153  EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212
             G    +  +     I+        FR  G+V             +  +     L E   
Sbjct: 789  AGGEERIVHEQ-GEVIFGE-GNVP-FRMNGVVQDITERKKVEKALELANAYNRSLIEASL 845

Query: 213  GHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270
                       I         +   +++++          +     E Y  +  E     
Sbjct: 846  DPLVTIGPDGKITDVNKATELVTGHLRSELIGTDFSDYFTEPEKAKEGYKQVFREGLVRD 905

Query: 271  EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH----PSLSAYFDEGENLTPETV 326
               +    + +           ++   E     +                         +
Sbjct: 906  YALEIQHRDGHITPVLYNASVYRDKDWEVIGIFAAARDVTEYKRAEKALKLANAYNRSLI 965

Query: 327  DKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
            +    P   +   G +   N S   +T Y   + I                   A +   
Sbjct: 966  EASIDPLVTIGPDGKITDVNNSTESITGYSRNELIGTD------FLDYFTEPEKAREGYQ 1019

Query: 386  LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
                +            I     +   + +      ++  + +       +  + +  + 
Sbjct: 1020 HVFQNGL---VRNYPLEILHKCGHLTPVLYNASVYRDETGKVIGVFAAARDITELKKAEE 1076

Query: 446  KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            K++     L +++E+++D I   + +GII S N+   +++GY  E+++ K  ++    N 
Sbjct: 1077 KIQT----LANVVESSNDAIITESLDGIITSWNKGAEQVYGYLAEEVMGKNMSILESDNL 1132

Query: 506  PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH----DI 561
               +   +  +            TL   K+  +L++ + +  +   S   + +     DI
Sbjct: 1133 KGEIKQLVDRVKQGKK--VQNHETLRLKKDGTILNISVTLSPVFDVSGKLVAISNIAGDI 1190

Query: 562  SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
            +E K  +N L H K++AE  +  K+DFLA +SHE+RTPL +IIGFS+++  Q +G L N 
Sbjct: 1191 TEKKISEN-LLHEKQMAEIANRTKNDFLANMSHELRTPLNSIIGFSDMLYEQAYGEL-NR 1248

Query: 622  RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
            + +     I  SG  +L+++N +LD+SKIE+ KM L++    L   +    +++   A++
Sbjct: 1249 KQLRAIGNISSSGKHLLNLINGILDLSKIEANKMELNYREFDLATKLELIRNVLYPVADK 1308

Query: 682  KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
            K I I       + +I AD     +I  N++ NAI F+     + I         V + V
Sbjct: 1309 KNIDIEIDMDTELTKICADEEKFTRIMYNLVDNAIKFSYENSLVKIGARKN-GNLVEITV 1367

Query: 742  RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
             D G+G+   +  K  KPF Q+ +    + +GTGLGL L K +V+ + G  +  S   +G
Sbjct: 1368 TDAGIGIKAEDQHKLFKPFSQVNSFPSKKFQGTGLGLSLVKQIVNLHGGYVWFRSEQGEG 1427

Query: 802  TLIEIIFPLY 811
            +      P+ 
Sbjct: 1428 STFAFAIPIA 1437



 Score =  134 bits (337), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 56/578 (9%), Positives = 146/578 (25%), Gaps = 69/578 (11%)

Query: 51  QSNFTDQNQESVSNTNYLDSENTFVFD--PIPRTVRFTWNIDAHGYLKEISEELPKTIGN 108
           +   + + + +         +  + FD  P    +     ID    +   +  +   +G 
Sbjct: 415 EQIESSKRKRAEETALQAAKDWKYTFDAVPDLIAI-----IDTEYKVVRANRAMAAKLGV 469

Query: 109 YAFKMIG----MRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLA 164
              + +G      +   ++     P+     LLK       +     + G        ++
Sbjct: 470 TPEECVGLTCYRAIHGTNEPPSFCPHR---QLLKDGIEHTTEVCEDCLGG-----YFLVS 521

Query: 165 ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDI 224
             P++    +  G     + H             R + +F  L E      +    +   
Sbjct: 522 TSPLHDSEGKLIG--SVHVAHDISERKQAEEALIRSENEFRTLAENSPDLIARFDRQNRH 579

Query: 225 FSQQSPPPHL--RMKNKVSSLTEYYAHKDDVLKTEKYP-----LLTSEESSLPEQEDFHT 277
                    +    + KV   T     +D                  +  ++  +     
Sbjct: 580 LYINPVSVEIYDHPQEKVIGKTHSELGRDPEQIKFWEEHHEKVFAIGKPETMEFEYTSPQ 639

Query: 278 INLNQYTKKQYFGTLQNNSKESFEY-LSHRNHPSLSAYFDEGENLTPETVD--------- 327
                +  +     +               +         E  +   E V+         
Sbjct: 640 GKKYYFNTRIVPEFVDGEVTSVLAISRDIADIKEAEIRLKETLDNLEELVEDRTTQLEKA 699

Query: 328 ---------KCPIPFFVYSHGNL--------FYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
                           +   GN          Y +     +      + +       T L
Sbjct: 700 YRSLKESEKGLAEAQKIAHLGNWNWNIVTDELYWSDEIYRIFGCTPQEFVAT---YDTFL 756

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
                 D+ +++  +    D    +     H I         +         +       
Sbjct: 757 SYVHPDDSESVENAVKGALDGKPYSID---HRIILAGGEERIVHEQGEVIFGEGNVPFRM 813

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490
           NG+  +  + +  ++ +E+      S++EA+ D +  I  +G I   N+A   + G+   
Sbjct: 814 NGVVQDITERKKVEKALELANAYNRSLIEASLDPLVTIGPDGKITDVNKATELVTGHLRS 873

Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
           +++   F+ +  +  P        ++    L +          ++  +  +         
Sbjct: 874 ELIGTDFSDYFTE--PEKAKEGYKQVFREGLVRDYALEI--QHRDGHITPVLYNASVYRD 929

Query: 551 SS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
                        D++E+K+ +  L  A          
Sbjct: 930 KDWEVIGIFAAARDVTEYKRAEKALKLANAYNRSLIEA 967



 Score =  103 bits (256), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/294 (10%), Positives = 92/294 (31%), Gaps = 13/294 (4%)

Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKY 354
            +E +E +             +       T D  P    +      +  AN +       
Sbjct: 410 REEKWEQIESSKRKRAEETALQAAKDWKYTFDAVPDLIAIIDTEYKVVRANRAMAAKLGV 469

Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
              + +    GL+        ++  +  P      D            +         ++
Sbjct: 470 TPEECV----GLTCYRAIHGTNEPPSFCPHRQLLKDGIEHTTEVCEDCL----GGYFLVS 521

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII 474
             P    +   + +    +  +  + +  +  +     +  ++ E + D IA  +R+   
Sbjct: 522 TSPLH--DSEGKLIGSVHVAHDISERKQAEEALIRSENEFRTLAENSPDLIARFDRQNRH 579

Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVF-LEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
           L  N    +++ +P E ++ K  +    +         +  ++ ++   +T+E       
Sbjct: 580 LYINPVSVEIYDHPQEKVIGKTHSELGRDPEQIKFWEEHHEKVFAIGKPETMEFEYTSPQ 639

Query: 534 KEEKLLSLRIIIKKLPFS-SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
            ++   + RI+ + +    +       DI++ K+ + +L       E+    ++
Sbjct: 640 GKKYYFNTRIVPEFVDGEVTSVLAISRDIADIKEAEIRLKETLDNLEELVEDRT 693



 Score = 78.5 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 35/373 (9%), Positives = 88/373 (23%), Gaps = 19/373 (5%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            I   G + ++++      G+   ++IG    D           +     +     Y    
Sbjct: 851  IGPDGKITDVNKATELVTGHLRSELIGTDFSDYFTEPEKAKEGYKQVFREGLVRDYALEI 910

Query: 149  LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                +G     P+   A     ++ E  G   F                K  +     L 
Sbjct: 911  Q-HRDGHI--TPVLYNASVYRDKDWEVIGI--FAAARDVTEYKRAEKALKLANAYNRSLI 965

Query: 209  EIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
            E              I    +             + +    Y  + +  +     +  + 
Sbjct: 966  EASIDPLVTIGPDGKITDVNNSTESITGYSRNELIGTDFLDYFTEPEKAREGYQHVFQNG 1025

Query: 266  ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
                   E  H    +           ++ + +     +     +     +E        
Sbjct: 1026 LVRNYPLEILHKC-GHLTPVLYNASVYRDETGKVIGVFAAARDITELKKAEEKIQTLANV 1084

Query: 326  VDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
            V+         S  G +   N     +  Y + + +     +         SDN   +  
Sbjct: 1085 VESSNDAIITESLDGIITSWNKGAEQVYGYLAEEVMGKNMSI-------LESDNLKGEIK 1137

Query: 385  MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
             L    +                   L ++       +   + +  + I  +  + +I++
Sbjct: 1138 QLVDRVKQGKKVQNHETLRLKKDGTILNISVTLSPVFDVSGKLVAISNIAGDITEKKISE 1197

Query: 445  RKMEIEVMQLCSI 457
              +     Q+  I
Sbjct: 1198 NLL--HEKQMAEI 1208



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 49/158 (31%), Gaps = 5/158 (3%)

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
           E    +  +              +A  D IAII+ E  ++  NRA++   G   E+ +  
Sbjct: 418 ESSKRKRAEETALQAAKDWKYTFDAVPDLIAIIDTEYKVVRANRAMAAKLGVTPEECVGL 477

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--C 553
                +             ++L   +  T E   +          +              
Sbjct: 478 TCYRAIHGTNEPPSFCPHRQLLKDGIEHTTE---VCEDCLGGYFLVSTSPLHDSEGKLIG 534

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
                HDISE KQ +  L  ++      + +  D +AR
Sbjct: 535 SVHVAHDISERKQAEEALIRSENEFRTLAENSPDLIAR 572


>gi|220924453|ref|YP_002499755.1| multi-sensor hybrid histidine kinase [Methylobacterium nodulans ORS
            2060]
 gi|219949060|gb|ACL59452.1| multi-sensor hybrid histidine kinase [Methylobacterium nodulans ORS
            2060]
          Length = 1350

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 135/749 (18%), Positives = 264/749 (35%), Gaps = 44/749 (5%)

Query: 88   NIDAHGYLKE--ISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWY 144
             +      +    ++     +      ++G R  +V   L        +   L       
Sbjct: 357  RLGPDDRFRLEACNQAAAAALQAEPDGLVGRRPEEVMPALQAARVEADLRRCLAVGEPIR 416

Query: 145  GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
             +++   ++  +     ++  +P+ +        R F             A  +  ++  
Sbjct: 417  FESS---VDLDSGRRDREIVLVPLRNEKNRLD--RVFASFRDITHLRRAEAATRETNRML 471

Query: 205  SHLHEIKKGHSSVEKEKYDIFSQQS------PPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
                EI          + +  +                +  V S    Y  +D  +    
Sbjct: 472  LMAEEIAHVGHWRLDVRENRLTWSQEIYRIYGVDPDSGEQTVDSAVAAYHPEDQPVVAAA 531

Query: 259  YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH----PSLSAY 314
                 +              + +           ++ + E        +       +   
Sbjct: 532  VADAIAHRRPFTLNLRILRPDGSVRHVVARGLCEEDETGEVAAIFGTLSDVTELRRVERE 591

Query: 315  FDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
              E  +L   T++       V S  G +   N   + L      + +        +LD  
Sbjct: 592  AAETASLLATTLESMDQGLVVVSPEGRVEICNARAIALLDLPP-ELMAGKPTAGQVLDHQ 650

Query: 374  KLSDNNAIKPVMLYRSDRTCIAASA-RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
                  A     +    +      A + +T        + +  +P    +          
Sbjct: 651  WAKGEFAGTEESIRHLLQLGSIVLAPQAYTRTRPNGTVIEVRTMPMAGGS-------LVR 703

Query: 433  IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
               +    R+ +  +     +   I E  SD I  +N +      + A  +L GY  ED+
Sbjct: 704  TYTDITARRVAEEALRESETRYRLIAENVSDVITRLNLDLEWDYVSPACRELLGYEPEDL 763

Query: 493  LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
            +       +  +  +         L+  L  T         ++   + +   I+ L  + 
Sbjct: 764  VGTKPLDGIHPDDRACSAETFA-CLTTGLVDTATSRQRCRRRDGSYVWVEARIRLLRGAD 822

Query: 553  C----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                 Y  ++ D+SE +Q+   L  A+  AE+ S  K+DFLA +SHEIRTPL  I+G+++
Sbjct: 823  GAPSGYVASLRDVSERQQQAEALEQARDAAEQASRAKTDFLALMSHEIRTPLNGILGYTD 882

Query: 609  VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
            ++                A  I  +G  +L IVND+LD SKIE+G++ L   P  LD  V
Sbjct: 883  LLLED---ATLGEGQRRQAERIQSAGAALLTIVNDILDFSKIEAGQVELDPRPFLLDALV 939

Query: 669  SEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIII 727
               IS+V+ +  +K I I T    ++PR ++ D   ++Q+ LN+L+NA+ FT +G  + +
Sbjct: 940  DNTISVVRGFVGKKAIAISTVVDPDVPRTLVGDQDRLRQVLLNLLNNAVKFTHAGS-VTL 998

Query: 728  STTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
            S +          +   V DTG+G+   +  +  + F Q+ +S      GTGLGL ++K 
Sbjct: 999  SVSCLEPAGATAALRFSVTDTGIGIPEDKRGRLFQRFSQLDSSIGRDFGGTGLGLAISKN 1058

Query: 784  MVDANMGKFYIFSTPAKGTL--IEIIFPL 810
            +V+   G   + S  +KGT     +  P+
Sbjct: 1059 LVELMGGTIDVESEVSKGTTFWFTVTLPV 1087



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 45/427 (10%), Positives = 108/427 (25%), Gaps = 49/427 (11%)

Query: 182 GIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSV--EKEKYDIFSQQSPPPHLRMKNK 239
           GIV ++   +   A  +      +HL        S+        I +        R+   
Sbjct: 91  GIVQLSIERDGLDAFTRSAHPLLAHLAASSPQIRSIVIFDADGRITADSGGAVPRRVPQV 150

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
           V          D        P   +               L+          + +     
Sbjct: 151 VDRSFFSVHRDDPQAGLFISPAFRN--------------RLDGAWTIIVSRRINHADGRF 196

Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDD 359
              ++   +P+    F E   +    +                 AN S L++  ++  D 
Sbjct: 197 AGVITASMNPNYFRAFYETMKVGANGIVAL------------LAANGSALVVDPWRD-DL 243

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS----ARLHTIQWNRENSLAMTF 415
           I         L   K   +  +            +A        L  +     +     +
Sbjct: 244 IGKPIARDGKLPEGKAGPDGTVVAETQAFGPERILAFRRAESLPLIAMVGLARDDALSPW 303

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII----NRE 471
                                 +       ++    +   ++ +A++DG+ I     +  
Sbjct: 304 RHQVLVLTGIALGVLGLTALTGLLLGRATARLRASEVLFRALFDASTDGLLICRLGPDDR 363

Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
             + + N+A +       + ++ +     +     + +   L   L++      E     
Sbjct: 364 FRLEACNQAAAAALQAEPDGLVGRRPEEVMPALQAARVEADLRRCLAVGEPIRFESSVDL 423

Query: 532 ----STKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
                 +E  L+ LR    +L        +  DI+  ++ +       ++          
Sbjct: 424 DSGRRDREIVLVPLRNEKNRL---DRVFASFRDITHLRRAEAATRETNRMLLMAEE---- 476

Query: 588 FLARVSH 594
            +A V H
Sbjct: 477 -IAHVGH 482


>gi|83593696|ref|YP_427448.1| multi-sensor hybrid histidine kinase [Rhodospirillum rubrum ATCC
            11170]
 gi|83576610|gb|ABC23161.1| multi-sensor hybrid histidine kinase [Rhodospirillum rubrum ATCC
            11170]
          Length = 1560

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 129/775 (16%), Positives = 243/775 (31%), Gaps = 71/775 (9%)

Query: 92   HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNTWYGKTTL 149
             G +   +       G  A ++IG  L  +         N   +   L  +      T  
Sbjct: 366  DGTIVGWNRAAEALFGYKAPEVIGKALAPLLIPADRMAENQSIVLSALSGEAVMAFDTQR 425

Query: 150  WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
               +G      + + A P++ R     G     ++   R            + +      
Sbjct: 426  IHADGHLF--DVSMTACPVHDRLGHVVGVAN--LIRDIRKRKAAEQSLLEFNAQLEKQVA 481

Query: 210  IKKGHSSVEKEKYDIFSQQSPPP-----------------------------HLRMKNKV 240
             +       +          P                                  M++ +
Sbjct: 482  SRTAELEKARRALQTVLDSVPSMIGYWDRDLHCHIANRAYCSWFNVDPSGLIGKSMRSLL 541

Query: 241  SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF 300
                               P         P  +       +          L   +    
Sbjct: 542  GEALFTANRPFIEAVLRGQPQTFERMIPRPNGQGVRHSLAHYIPDVVDGEVLGFYALVHD 601

Query: 301  EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDI 360
                      L A   E E L     ++         +GN+   N +F  L  Y   + +
Sbjct: 602  VSELVEGRQKLDAALRENEALLRTIDEQLLCSI-TDRNGNIISINDNFCKLMGYTKDELL 660

Query: 361  EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
                GL   +    L D      V    S                       +  +    
Sbjct: 661  ----GLDHRIMNSGLHDKTFWADVWATISAGGSWRGEVCNKA---KDGALYWLDSVLTPF 713

Query: 421  ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNR 479
              +         +  +  D +  + +       L S+L +  +  I   + +G+I   N 
Sbjct: 714  FGEDGSIDRYVALRIDITDRKKAEAERNRSNTLLRSVLASAREFSIIATDPDGVITIFNS 773

Query: 480  AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH-------------YLTEILSLDLRQTLE 526
               KL GY  E+++ K     +                       +   +   +      
Sbjct: 774  GAEKLLGYSAEEMVGKQTPALIHLADQVAERGRSLSDEFGVPIEGFRVFVHRSERDGVEA 833

Query: 527  KITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKES 582
            +      K+   L + +++  +         Y     D+S  K+ +  L  AK+ AE+ S
Sbjct: 834  QEWTYVRKDGGHLEVLLVVTAIREDDGRIAGYLGVAQDVSRRKEFERALVLAKQAAEEAS 893

Query: 583  SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
              K  FLA +SHEIRTP+ AI+G   +++     P       +Y      +   +L ++N
Sbjct: 894  VVKGQFLANMSHEIRTPMNAILGMLTLVQRTALTP----HQADYVCKAHSAAGSLLGLLN 949

Query: 643  DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADL 701
            D+LD SKIE+GK++L   P  L+  + +   ++     +K + +    A ++P   + D 
Sbjct: 950  DILDFSKIEAGKLHLEPHPFRLETVLRDLAVVLSGSYGDKGVEVLFDIAPHLPDSFIGDD 1009

Query: 702  RSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVILR--VRDTGVGMTNYELEKAMK 758
              ++Q+ LN+  NA+ FT  G  I+ +      ++ + +R  V DTG+G+   +L     
Sbjct: 1010 LRLRQVLLNLAGNALKFTDQGQVIVSVGVLAREDDRLTMRMAVSDTGIGIAADQLASIFG 1069

Query: 759  PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE--IIFPLY 811
             F Q   S   R  G+GLGL + + +V+   G   + S P +G+     I  P+ 
Sbjct: 1070 AFEQAETSTTRRFGGSGLGLTITRHLVERMGGVLRVESQPGRGSRFWFDITLPVS 1124



 Score =  110 bits (275), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 65/483 (13%), Positives = 135/483 (27%), Gaps = 46/483 (9%)

Query: 119 CDVSDILHIDPNNHIGDLLKRQNTW--------YGKTTLWPIEGTNLYVPIDLAALPIYS 170
            ++++         + D +  + T          G    +   G    V    +      
Sbjct: 39  AELAETAASLELTRLSDAIAERITLYQYGLRGARGVIVTFGERGITREVFRGYSKT--RD 96

Query: 171 RNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP 230
              EF G RGFG +   RV  D         +            +  E E++ I   +  
Sbjct: 97  IGAEFPGARGFGFIR--RVPADREERFLAEARADGWPDFAIAQFTPHEGERFVIQYIEPA 154

Query: 231 PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG 290
             +L+      +  +                LT   + +    D     L      +   
Sbjct: 155 QRNLKAVGLDIASEKNRREAALAAIDTGQVRLTGPITLVQASGDKSQSFLILLPIYRTLS 214

Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLL 350
           T +  ++   +       P        G                V +   L       L 
Sbjct: 215 TPETLAERRAQAFGWSYAPLNMPEVLSG---------------LVPNQDRL------ALT 253

Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
           L    +  + E     +T   A +       + +     + +   + A  H +Q      
Sbjct: 254 LRDVTNPAEAETVFTSNTDCAAAECVTKTLTRSIFGRVWEISVTVSPAYGHAVQR----- 308

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470
                     +     ++   G        +  +R++     +L +I+E + D I     
Sbjct: 309 ---IAPWVVVSLGIGASILAAGFAAVIGLNQARRREIAQAQARLSTIVENSGDAIIGEAL 365

Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530
           +G I+  NRA   LFGY   +++ K     L        N  +  + +L     +   T 
Sbjct: 366 DGTIVGWNRAAEALFGYKAPEVIGKALAPLLIPADRMAENQSI-VLSALSGEAVMAFDTQ 424

Query: 531 GSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
               +  L  + +    +     + +     + DI + K  +  L       EK+ + ++
Sbjct: 425 RIHADGHLFDVSMTACPVHDRLGHVVGVANLIRDIRKRKAAEQSLLEFNAQLEKQVASRT 484

Query: 587 DFL 589
             L
Sbjct: 485 AEL 487



 Score = 62.7 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/264 (10%), Positives = 68/264 (25%), Gaps = 25/264 (9%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGKT 147
            D +G +  I++   K +G    +++G+    ++  LH       +   +    +W G+ 
Sbjct: 635 TDRNGNIISINDNFCKLMGYTKDELLGLDHRIMNSGLHDKTFWADVWATISAGGSWRGEV 694

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                +G   ++   L   P +  +     +    I           A   R +     +
Sbjct: 695 CNKAKDGALYWLDSVL--TPFFGEDGSIDRYVALRI--DITDRKKAEAERNRSNTLLRSV 750

Query: 208 HEIKKGHSSVEKEKYDIF----SQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
               +  S +  +   +     S          +  V   T    H  D +      L  
Sbjct: 751 LASAREFSIIATDPDGVITIFNSGAEKLLGYSAEEMVGKQTPALIHLADQVAERGRSLSD 810

Query: 264 SEESSLPEQEDFHTI----------------NLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
                +     F                   +            ++ +      YL    
Sbjct: 811 EFGVPIEGFRVFVHRSERDGVEAQEWTYVRKDGGHLEVLLVVTAIREDDGRIAGYLGVAQ 870

Query: 308 HPSLSAYFDEGENLTPETVDKCPI 331
             S    F+    L  +  ++  +
Sbjct: 871 DVSRRKEFERALVLAKQAAEEASV 894



 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/154 (8%), Positives = 35/154 (22%), Gaps = 16/154 (10%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            D  G +   +    K +G  A +M+G +   +  +             +      G   
Sbjct: 762 TDPDGVITIFNSGAEKLLGYSAEEMVGKQTPALIHLADQVAERGRSLSDEFGVPIEGFRV 821

Query: 149 LWPIEGTN--------------LYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR 194
                  +               ++ + L    I   +   +G+ G  +        +  
Sbjct: 822 FVHRSERDGVEAQEWTYVRKDGGHLEVLLVVTAIREDDGRIAGYLG--VAQDVSRRKEFE 879

Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228
                  +       +K    +    +       
Sbjct: 880 RALVLAKQAAEEASVVKGQFLANMSHEIRTPMNA 913


>gi|288941099|ref|YP_003443339.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180]
 gi|288896471|gb|ADC62307.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180]
          Length = 1650

 Score =  396 bits (1017), Expect = e-107,   Method: Composition-based stats.
 Identities = 125/774 (16%), Positives = 262/774 (33%), Gaps = 52/774 (6%)

Query: 69   DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID 128
            ++EN F        V   W  D  G     +    +          G    ++  I   +
Sbjct: 511  ETENRFRSFMDHTPV-LAWLKDDQGRHVYANRGFEQHFRLNWEDWQGKTDFELWPIEIAE 569

Query: 129  PNNH-IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNRE-FSGFRGFGIVHV 186
                    +L               +G   +  +         +  + F G    GI   
Sbjct: 570  VFRRNDQQVLATGQALETIEESVDPDG-QPHFWLTTKFT-FDDQTGQTFVG----GIALD 623

Query: 187  NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY 246
                       +  + +   +         ++  +        P   LR ++ +      
Sbjct: 624  ITERRKIERALEERESRLQFIIANSPDLIFIQDLEQRYIWLSHPSAPLRPEDCLGHTDRD 683

Query: 247  YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
                ++  +  +      +       E   T++  +      +   ++ +        + 
Sbjct: 684  LLLPEEGARLMRIKQDVLDTGRRTTIELPLTLDGQRRVFDATYEPWRDANGTLVGLAGYV 743

Query: 307  NHPSLSAYFD----EGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIE 361
               +     +             +       + +     + + +P    L   +    + 
Sbjct: 744  RDITERKQAEIAHQADNQRLHWALQAAHGGAWDWDLSTDVAWWSPEMYALWGVEPETKMV 803

Query: 362  IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
            +   LS           +    V     D   +    R+     + E  +A        A
Sbjct: 804  LDNSLS---LVADQDRASLRANVERAIQDGRDLQCEFRI-RHPQHGERWMASWGRLVTDA 859

Query: 422  NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
            +         G+  +  D +  ++ ++    +   ++E  +  I  +  +G+I   N   
Sbjct: 860  DGLS---HLLGLSFDITDQKRMEQALKDSESRYRDLVENVNSVILRLAPDGLIAFANEYA 916

Query: 482  SKLFGYPVEDILRKPFTVFLEQ-NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
             + FGY  E+++ +P TV +   ++       + + +  +  + +  I      + + + 
Sbjct: 917  LRFFGYAAEELIGRPVTVLVPTVDSTGQNLSAMVQEILANSERYVHHINENLCHDGRRVW 976

Query: 541  LRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKE--------------- 581
            +    K L              +DI+E ++ + +L   ++  E                 
Sbjct: 977  MAWTNKALYDDRGRLIGVLAVGNDITERRRLEQELDRHRRHLEALVDERTAQLTEARARA 1036

Query: 582  ---SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
               +  KS FLA +SHEIRTP+ A++GF  +++     P       +    I  +G  +L
Sbjct: 1037 EAANQAKSAFLANMSHEIRTPMNAVLGFCYLLEQHALDPAS----ADLVRKIHNAGQALL 1092

Query: 639  DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN-NIPRI 697
            D++ND+LD SKIE+G++ L   P  L E +     ++   A +K + +  +    +I  +
Sbjct: 1093 DLINDILDFSKIEAGRLELEAAPFRLSELLDTLAGIMTAAAGDKPLELILTPPEADIEGL 1152

Query: 698  LADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDTGVGMTNYELE 754
            + D   ++Q+ +N+L NAI FT  G    +I     H    E+   VRDTG+G+     E
Sbjct: 1153 IGDAGRLRQVLINLLGNAIKFTARGEVELRIECLAEHDDAVELRFAVRDTGIGIDPESQE 1212

Query: 755  KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            +  +PF Q   S   R  GTGLGL +++ +V    G   I S P +G+      
Sbjct: 1213 RLFQPFTQADVSTTRRFGGTGLGLSISRQLVRLMGGTLEIESQPGQGSTFHFSL 1266



 Score =  100 bits (248), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 57/575 (9%), Positives = 151/575 (26%), Gaps = 36/575 (6%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D       IS       G     +IG    +    +           L  +         
Sbjct: 403 DRQMRYLAISRRWLADFGLEDSDLIGRGHYETFPDIPERWREAHRRALAGEVLGCDDDVF 462

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGF-GIVHVNRVDNDPRALGKRLDKKFSHLH 208
              +GT L    +L   P Y  +    G   F   V   +     +A  +  + +F    
Sbjct: 463 VRQDGTVLRRCWEL--RPWYEFDGTLGGIVLFTDDVSPRKQAEQAQAAQRETENRFRSFM 520

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPH--LRMKNKVSSLTEYYAHKDDVLK---TEKYPLLT 263
           +     + ++ ++                        T++     ++ +        +L 
Sbjct: 521 DHTPVLAWLKDDQGRHVYANRGFEQHFRLNWEDWQGKTDFELWPIEIAEVFRRNDQQVLA 580

Query: 264 SEESSLPEQEDFHTINLNQYTK--KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
           + ++    +E         +    K  F      +      L       +    +E E+ 
Sbjct: 581 TGQALETIEESVDPDGQPHFWLTTKFTFDDQTGQTFVGGIALDITERRKIERALEERESR 640

Query: 322 TPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
               +   P   F+            ++ L+   +   +     L        L +  A 
Sbjct: 641 LQFIIANSPDLIFIQDLE------QRYIWLSHPSAP--LRPEDCLGHTDRDLLLPEEGAR 692

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
             +M  + D         +                     +     +   G   +  + +
Sbjct: 693 --LMRIKQDVLDTGRRTTIELPLTLDGQRRVFDATYEPWRDANGTLVGLAGYVRDITERK 750

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE-DILRKPFTVF 500
             +   + +  +L   L+A   G    +    +   +  +  L+G   E  ++       
Sbjct: 751 QAEIAHQADNQRLHWALQAAHGGAWDWDLSTDVAWWSPEMYALWGVEPETKMVLDNSLSL 810

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---YSLT 557
           +     + +   +   +     + L+        +     +    + +  +         
Sbjct: 811 VADQDRASLRANVERAIQDG--RDLQCEFRIRHPQHGERWMASWGRLVTDADGLSHLLGL 868

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
             DI++ K+ +  L  ++        + +  + R++ +       +I F+     + FG 
Sbjct: 869 SFDITDQKRMEQALKDSESRYRDLVENVNSVILRLAPD------GLIAFANEYALRFFGY 922

Query: 618 LGNPRYIE----YANYIDRSGNLVLDIVNDLLDIS 648
                           +D +G  +  +V ++L  S
Sbjct: 923 AAEELIGRPVTVLVPTVDSTGQNLSAMVQEILANS 957



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/366 (10%), Positives = 88/366 (24%), Gaps = 23/366 (6%)

Query: 219 KEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTI 278
            E+  +  + +P P   + + V  L      ++  L      L    + ++         
Sbjct: 295 DEEAGLLYRYTPNP-SPLTDAVWPLACLDPCEEATLNVAGLSLRLRIQPAVGSVPVGPW- 352

Query: 279 NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH 338
                        L         ++  R     ++     E       D  P+   ++  
Sbjct: 353 --------PVLVALLGLGVAVLVFVLLRERRRATSRLRRQEARLRLFFDHAPVALAMFDR 404

Query: 339 G-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397
                  +  +L     +  D +   G   T  D P        +           +   
Sbjct: 405 QMRYLAISRRWLADFGLEDSD-LIGRGHYETFPDIP-----ERWREAHRRALAGEVLGCD 458

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQF-PENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
             +   Q            P+ + +      +               +        +  S
Sbjct: 459 DDVFVRQDGTVLRRCWELRPWYEFDGTLGGIVLFTDDVSPRKQAEQAQAAQRETENRFRS 518

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
            ++ T     + + +G  +  NR   + F    ED   K            V      ++
Sbjct: 519 FMDHTPVLAWLKDDQGRHVYANRGFEQHFRLNWEDWQGKTDFELWPIEIAEVFRRNDQQV 578

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---YSLTMHDISEWKQEKNKLSH 573
           L+      LE I      + +              +          DI+E ++ +  L  
Sbjct: 579 LATGQA--LETIEESVDPDGQPHFWLTTKFTFDDQTGQTFVGGIALDITERRKIERALEE 636

Query: 574 AKKIAE 579
            +   +
Sbjct: 637 RESRLQ 642



 Score = 65.0 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 36/396 (9%), Positives = 91/396 (22%), Gaps = 24/396 (6%)

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY 246
                   A  +        + E+          + + F      P    +  +      
Sbjct: 142 ATERTTFEARQRAAGHADFIIRELSDAGLRPAGTRAEYFPVAQIEPLAGNEPVLGFDVGS 201

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
              +  VL+             L   ++                     S+ +    S  
Sbjct: 202 SPERLAVLERAWARGQPVASRPLTLLQEPDRQKGIVIFVPA--------SRPATFAGSTP 253

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
           +  +    F  G       VD       +                         E AG L
Sbjct: 254 DARAPIRGFATGVMRLGTLVDTVMSKLALDDIEVTLL------------DPGVDEEAGLL 301

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
                 P    +       L   +   +  +     ++       ++   P+        
Sbjct: 302 YRYTPNPSPLTDAVWPLACLDPCEEATLNVAGLSLRLRIQPA-VGSVPVGPWPVLVALLG 360

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
                 +     + R    ++  +  +L    +     +A+ +R+   L+ +R     FG
Sbjct: 361 LGVAVLVFVLLRERRRATSRLRRQEARLRLFFDHAPVALAMFDRQMRYLAISRRWLADFG 420

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
               D++ +        + P          L+ ++    + + +            +   
Sbjct: 421 LEDSDLIGRGHYETF-PDIPERWREAHRRALAGEVLGCDDDVFVRQDGTVLRRCWELRPW 479

Query: 547 KLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
                      L   D+S  KQ +   +  ++   +
Sbjct: 480 YEFDGTLGGIVLFTDDVSPRKQAEQAQAAQRETENR 515


>gi|117924342|ref|YP_864959.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117608098|gb|ABK43553.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1041

 Score =  395 bits (1016), Expect = e-107,   Method: Composition-based stats.
 Identities = 125/659 (18%), Positives = 252/659 (38%), Gaps = 34/659 (5%)

Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS 242
           I H  R ++  RA    +D         +      E E   I   +   P ++       
Sbjct: 257 IAHHQRHNHAQRARVLIMDDNEPLGRFYQMLLELAEMEVVYIREAEELLPAIQRFKPEVL 316

Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLP-----EQEDFHTINLNQYTKKQYFGTLQNNSK 297
           L + Y    + L+       +   + LP     E      I       + +         
Sbjct: 317 LLDLYMPDANGLEIAAVVRQSDSNADLPILLMVENNAGRRILDQTKESESFLIKPVQPGL 376

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-------FVYSHGNLFYANPSFLL 350
                +        +    E        +++  +              GN+ + N  F  
Sbjct: 377 MVRAVIERVRQRRQTVGRVEYMRSALHELEQLQLALNQHAIVSVTDQDGNITFVNQKFCQ 436

Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
            + Y   + I    G +  +        +  + +    +         +    +     +
Sbjct: 437 TSGYTPNELI----GNNHRMLKSDQHPASFYQEMWATITQGQTWHGQVKN---RRKNGTT 489

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470
             ++       +          +  +    +  + +      +L +IL+ T +G+ ++  
Sbjct: 490 YWVSATIVPFLDGDGTPREYISVRTDVTAQKAAQERYRASEQRLRAILDNTHEGVVVMEA 549

Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE---- 526
            G I   N A +++FGY + D+ +      L +   + + +                   
Sbjct: 550 SGQIEMLNPAAARIFGYTLADMPQPTIQWLLPEFPLTDILNDAHLHEGGGAGDVSHANLY 609

Query: 527 KITLGSTKEEKLLSLRIIIK--KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
           +    +  +   + L + +    L  S+     + DI+  K E+ +L  AK++AE+ S+ 
Sbjct: 610 REMAANRSDGSRMLLGVSVSSFHLEESAVCVAVVRDITARKMEEIELKQAKEVAERASAA 669

Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
           K+ FL+ +SHE+RTP+ AI+GF++V+++    PL      E    I ++G  +L+++ND+
Sbjct: 670 KTRFLSSMSHELRTPMNAILGFAQVMQSDPNEPLS-ESQRECTREIIQAGGHLLELINDV 728

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR---ILADL 701
           LD++KIE  +++L   PV + E + EA++LV   AN K I +       +     + AD 
Sbjct: 729 LDLAKIEENRISLKMAPVHVQEVIREAVALVTPMANRKGIRLYHGMGEGVCERCDVQADR 788

Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761
             +KQI +N+ +N + +   GG++ IS          + VRDTG+G+   +     +PF 
Sbjct: 789 TRLKQILINLATNGVKYNREGGEVEISCRLAEAGRARIEVRDTGIGIAALKQGDIFEPFH 848

Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP---LYDTSHPH 817
           ++        EGTG+GL + K +V+A  G   + S   +G+      P   +   + PH
Sbjct: 849 RLVEDGT--IEGTGIGLSIVKRLVEAMGGTLGLESQEGQGSRFWFQLPNSGICSPTKPH 905



 Score = 65.8 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 23/253 (9%), Positives = 61/253 (24%), Gaps = 13/253 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKRQNTWYGKT 147
            D  G +  ++++  +T G    ++IG     + SD         +   + +  TW+G+ 
Sbjct: 421 TDQDGNITFVNQKFCQTSGYTPNELIGNNHRMLKSDQHPASFYQEMWATITQGQTWHGQV 480

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                 GT     +    +P    +     +    +          +   +  +++   +
Sbjct: 481 KNRRKNGTTY--WVSATIVPFLDGDGTPREY--ISVRTDVTAQKAAQERYRASEQRLRAI 536

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPP------PHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
            +       V +    I                 M               D+L       
Sbjct: 537 LDNTHEGVVVMEASGQIEMLNPAAARIFGYTLADMPQPTIQWLLPEFPLTDILNDAHLHE 596

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN--SKESFEYLSHRNHPSLSAYFDEGE 319
                                   +   G   ++   +ES   ++     +     +   
Sbjct: 597 GGGAGDVSHANLYREMAANRSDGSRMLLGVSVSSFHLEESAVCVAVVRDITARKMEEIEL 656

Query: 320 NLTPETVDKCPIP 332
               E  ++    
Sbjct: 657 KQAKEVAERASAA 669


>gi|288941879|ref|YP_003444119.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
 gi|288897251|gb|ADC63087.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
          Length = 1253

 Score =  395 bits (1016), Expect = e-107,   Method: Composition-based stats.
 Identities = 137/751 (18%), Positives = 280/751 (37%), Gaps = 51/751 (6%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150
           A G   E ++     +G  + +   +R+ D       +        +  Q     +T   
Sbjct: 38  ADGSTLEFNQVSCAQLGYTSEEFARLRISDYEVQESAEDVAAHIRRVLTQGRDEFETQHR 97

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN-RVDNDPRALGKRLDKKFSHLHE 209
             +G  + V + ++ L +  R           +V    R   D R   +  ++       
Sbjct: 98  HKDGRVIDVSVAVSCLDLGERP------VLLAVVRDISRRKQDERQAHQAEERLQLATEA 151

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNK------VSSLTEYYAHKDDVLKTEKYPLLT 263
            K G    + ++  +   +       ++ +      V   T         +K +   L+ 
Sbjct: 152 AKLGIWDYDIQQDRLIWDERMFQLYGLEPREFGYRFVDWSTLVLPESLQRVKADFQALVE 211

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE----GE 319
           S      + +     +    T +       ++   +   +      +            E
Sbjct: 212 SGRPFDVKFQIRRPSDGEIRTLRGLARVTHDDQGRAIRVVGVNEDITEFQAVQREILDRE 271

Query: 320 NLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
               +  ++     + V + G   Y +P   L+  Y   + +            P+    
Sbjct: 272 QRLQQLAEQSRTVTWEVDAQGRYTYLSPVAELVWGYTPDEIVGRRYFYD---LHPEPGRE 328

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
              + +    +    +     ++ I       + ++       +     +   G + +  
Sbjct: 329 AFREAIFQAIA--QQLKFQGHVNPIIRKDGRVIWVSTNAIPVTDDRGLLLGYRGSDVDIT 386

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAII-----NREGIILSTNRAVSKLFGYPVEDIL 493
           + +  K  +E E  +   I E T   +A+      +++ I    N A  ++     + ++
Sbjct: 387 EAKYAKEALEAEKERFRGIFEKTGSAVAVYQPTDDSQDFIFTDYNPAAERIDRTTRQAVI 446

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553
            +  T          +   L  +      Q +        ++++L + R        S  
Sbjct: 447 GRCLTECFPAAIEMGLVDMLRRVNLTGQTQYM---PSAYYQDDRLQAWRENTIFKLSSGE 503

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
                +D++E K+ +         AE+ S  KS FLA +SHEIRTP+ A+IG S+++   
Sbjct: 504 VVAVYNDLTEIKRAQE-------AAERASRAKSQFLANMSHEIRTPMNAVIGLSDLLLET 556

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
                 + +  +Y   I  S  L+L I+ND+LD SKIE+GK++L  +P SLD+ + +  +
Sbjct: 557 PL----DAKQRDYLGKIRESSRLLLGIINDILDYSKIEAGKLDLSLQPFSLDDLLDQMRT 612

Query: 674 LVQLYANEKRILIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
           L    A+ + I +    A +++ R+  D   ++Q+ +N+LSNA+ FT  G Q+++S    
Sbjct: 613 LFGNEADARDIELIFDLAVSSLHRVEGDALRLRQVLINLLSNAVKFTEQG-QVVLSIRQL 671

Query: 733 SNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                   +   VRDTG+G+   +  +  KPF Q  +S   R  GTGLGL +++ +V+  
Sbjct: 672 DAGTASARLRFEVRDTGIGIAPEQQTRLFKPFSQADSSTTRRYGGTGLGLVISQKLVEKM 731

Query: 789 MGKFYIFSTPAKGTLIEI--IFPL-YDTSHP 816
            G   + STP  G+        P+  D + P
Sbjct: 732 GGTLVLESTPGAGSRFYFDLTLPVSSDQTRP 762



 Score = 78.1 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 57/148 (38%), Gaps = 6/148 (4%)

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRKPFT 498
             I   +   + ++  ++ E   D   +I+  +G  L  N+      GY  E+  R   +
Sbjct: 7   RSIAATEAARQDVEFRTLFEVYPDATILIDPADGSTLEFNQVSCAQLGYTSEEFARLRIS 66

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCYSL 556
            +  Q +   +  ++  +L+       E  T    K+ +++ + + +    L        
Sbjct: 67  DYEVQESAEDVAAHIRRVLTQGRD---EFETQHRHKDGRVIDVSVAVSCLDLGERPVLLA 123

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSH 584
            + DIS  KQ++ +   A++  +  +  
Sbjct: 124 VVRDISRRKQDERQAHQAEERLQLATEA 151



 Score = 64.3 bits (155), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 56/390 (14%), Positives = 112/390 (28%), Gaps = 43/390 (11%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMR-LCDVSDILHIDP-NNHIGDLLKRQNTW 143
           TW +DA G    +S       G    +++G R   D+      +     I   + +Q  +
Sbjct: 285 TWEVDAQGRYTYLSPVAELVWGYTPDEIVGRRYFYDLHPEPGREAFREAIFQAIAQQLKF 344

Query: 144 YGKTT-LWPIEGTNLYVPIDLAALPIYSRNREFSGFRG--FGIVHVNRVDNDPRALGKRL 200
            G    +   +G    + +   A+P+        G+RG    I           A  +R 
Sbjct: 345 QGHVNPIIRKDGR--VIWVSTNAIPVTDDRGLLLGYRGSDVDITEAKYAKEALEAEKERF 402

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL-----RMKNKVSSLTEYYAHKDDVLK 255
              F         +   +  +  IF+  +P         R       LTE +    ++  
Sbjct: 403 RGIFEKTGSAVAVYQPTDDSQDFIFTDYNPAAERIDRTTRQAVIGRCLTECFPAAIEMGL 462

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
            +    +     +      ++  +  Q  ++     L      S E ++  N  +     
Sbjct: 463 VDMLRRVNLTGQTQYMPSAYYQDDRLQAWRENTIFKL-----SSGEVVAVYNDLTEIKRA 517

Query: 316 DEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
            E                          A   FL    ++    +    GLS LL    L
Sbjct: 518 QEAAERASR-------------------AKSQFLANMSHEIRTPMNAVIGLSDLLLETPL 558

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
                     +  S R  +     +          L ++  PF   +   +     G E 
Sbjct: 559 DAKQRDYLGKIRESSRLLLGIINDILDYSKIEAGKLDLSLQPFSLDDLLDQMRTLFGNEA 618

Query: 436 EDVDTRI-------NKRKMEIEVMQLCSIL 458
           +  D  +       +  ++E + ++L  +L
Sbjct: 619 DARDIELIFDLAVSSLHRVEGDALRLRQVL 648


>gi|284051659|ref|ZP_06381869.1| multi-sensor hybrid histidine kinase [Arthrospira platensis str.
           Paraca]
          Length = 1081

 Score =  395 bits (1016), Expect = e-107,   Method: Composition-based stats.
 Identities = 153/742 (20%), Positives = 278/742 (37%), Gaps = 71/742 (9%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +DA G   ++++   + +G    +++G RL D       +      +L K+Q        
Sbjct: 259 LDAEGRYVKVNDTELQWLGYSREQLLGRRLADFLTPDSREIFESNFELFKQQGYLKDMLL 318

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                  +   P+ L    +Y+   E+   R    +         +   ++       + 
Sbjct: 319 EMISSNGH-VFPVLLNYSAVYNPQGEYLYSR--STLFDITDLKSAQIALEKNHNLLQSIT 375

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
             +    + E          S    L + +           +D+                
Sbjct: 376 LAQSQFITSENRLTIFDGLLS--SLLTLTDSEYGFIGEVMFRDN---------------- 417

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
                          T ++ F  ++         +S+      +  F +  +      D 
Sbjct: 418 ------------GGATMEETFLKIRGVPYLKTHSISNVAWDEATEKFYQENHEEGMEFDN 465

Query: 329 CPIPF-FVYSHGNLFYAN-PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
               F  V   G    AN PS                  L++ L  P  S +  +  V +
Sbjct: 466 MNTLFGAVIMTGKPVIANSPSSDPRRGGTP----NGHPPLNSFLGLPFFSSSTLVGIVGI 521

Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
                         H    +   +  +T     +  +      +     +  +  I K  
Sbjct: 522 ANKPGG-------YHEEMIDYLQAFLVTCGNLIEGYRLHRKRNEAEEAKKAAEQEIAK-- 572

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP-VEDILRKPFTVFLEQNT 505
                 QL SI EA  DGIAI+  +      N A   +FGY   ED++   +        
Sbjct: 573 ------QLASI-EAAGDGIAIVQDDL-YQYVNHAHLVMFGYSEPEDLVGHSWRKIYSPTE 624

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
                + +  I+  D   T     + + ++    +  + +  L   +       DIS+ +
Sbjct: 625 IQRFENEVFPIVMRDRYWTG--EAIATRQDGTSFAEELSLT-LTEDNLLICVCRDISDRR 681

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + + KL    +   + +  K +FLA +SHE+RTPL AI+G +E ++ + FG LG+ R  +
Sbjct: 682 ETEAKLRQTNQELMRATRLKDEFLANMSHELRTPLNAILGMTEGMQEEVFGTLGD-RQKQ 740

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
               I+RS + +L+++ND+LD++KIE+G+M L     S+      +I+ ++  A +K I 
Sbjct: 741 ALQTIERSASHLLELINDILDLAKIEAGEMKLDLNYTSIRPLCQSSIAFIKQQAFKKGIS 800

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT------SNEEVIL 739
           I       +P +  D R ++Q+ +N+L+NA+ FTPS G+I +               V  
Sbjct: 801 INVQIPQALPDLYIDERRLRQVLINLLNNAVKFTPSRGKISLEVKLQPPPIDSDKSRVRF 860

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V DTG+G+   +L K  KPF QI ++   + EGTGLGL L K +V+ + G   + S   
Sbjct: 861 AVIDTGIGINEEQLSKLFKPFTQIDSALNRQYEGTGLGLSLVKRIVEMHGGTVNVISKVG 920

Query: 800 KGTLIEIIFP----LYDTSHPH 817
            G+      P    L  T+ PH
Sbjct: 921 SGSQFIFEIPCDDILIGTNTPH 942



 Score =  112 bits (279), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 44/394 (11%), Positives = 104/394 (26%), Gaps = 24/394 (6%)

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           +I + H + + + Y I+        L     V         +D  L           E  
Sbjct: 4   DISQNHLTWDDQMYKIYGVSP----LECPQTVELWKNSLHPEDAELTQAILQESLRGERE 59

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE---- 324
              +      + +    K     ++N   E    +      + S   +            
Sbjct: 60  FNPEFRIVRPDGSIVFIKANALIIRNPEGEPQRMIGTNVDITESKQAESDRQQLLRELSD 119

Query: 325 ---TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
               +D   I     + G + Y N  F  ++ Y S + I    G S  +   +       
Sbjct: 120 LKLAIDHSAIVAVTDASGVITYVNNRFCEISGYSSEELI----GKSHRIVNSRCHPPGFF 175

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
             +    S              +    +            N   +      I  +    +
Sbjct: 176 ANLWRTISSGKVWHGEICN---RSKNGSIYWTESTIVPFLNSHKKVSQYLAIRFDITARK 232

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
             + ++     ++  +      G   ++ EG  +  N    +  GY  E +L +    FL
Sbjct: 233 QAEARLLDYSHEIEDLYNKAPCGYHSLDAEGRYVKVNDTELQWLGYSREQLLGRRLADFL 292

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH-- 559
             ++  +              + +    +  +    +  + +    +       L     
Sbjct: 293 TPDSREIFESNFELFKQQGYLKDMLLEMI--SSNGHVFPVLLNYSAVYNPQGEYLYSRST 350

Query: 560 --DISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
             DI++ K  +  L     + +  +  +S F+  
Sbjct: 351 LFDITDLKSAQIALEKNHNLLQSITLAQSQFITS 384



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/263 (9%), Positives = 66/263 (25%), Gaps = 15/263 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS---DILHIDPNNHIGDLLKRQNTWYG 145
            DA G +  ++    +  G  + ++IG     V+            ++   +     W+G
Sbjct: 133 TDASGVITYVNNRFCEISGYSSEELIGKSHRIVNSRCHPPGF--FANLWRTISSGKVWHG 190

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +       G+      +   +P  + +++ S +    I           A       +  
Sbjct: 191 EICNRSKNGSIY--WTESTIVPFLNSHKKVSQY--LAIRFDITARKQAEARLLDYSHEIE 246

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQS----PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
            L+            +               + R +     L ++       +    + L
Sbjct: 247 DLYNKAPCGYHSLDAEGRYVKVNDTELQWLGYSREQLLGRRLADFLTPDSREIFESNFEL 306

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
              +        +  + N + +     +  + N   E     S     +           
Sbjct: 307 FKQQGYLKDMLLEMISSNGHVFPVLLNYSAVYNPQGEYLYSRSTLFDITDLKSAQIALEK 366

Query: 322 TPETVDKCPIP--FFVYSHGNLF 342
               +    +    F+ S   L 
Sbjct: 367 NHNLLQSITLAQSQFITSENRLT 389


>gi|261406146|ref|YP_003242387.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
            sp. Y412MC10]
 gi|261282609|gb|ACX64580.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
            sp. Y412MC10]
          Length = 1004

 Score =  395 bits (1016), Expect = e-107,   Method: Composition-based stats.
 Identities = 131/765 (17%), Positives = 264/765 (34%), Gaps = 64/765 (8%)

Query: 87   WNIDA-HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            W  D     L   S+E+ +  G     +       +S ++  D       +         
Sbjct: 267  WRWDLITHTLTY-SDEMRRIYGYQINAIEPNHDTLMSLVIPEDRERLEQVVRTAVQGRAD 325

Query: 146  KTTLW--PIEGT------NLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG 197
            +        +G          V +     P              G+              
Sbjct: 326  EIIYRIQLKDGQIRTIRAQWEVTVTNEGRP----------MEMVGMAQDITEQVMIEQQS 375

Query: 198  KRLDKKFSHLHEIKKGHSSVEK-EKYDIFSQQS---PPPHLRMKNKVSSLTEYYAHKDDV 253
               + K+  + E      S    + +               R +  V + T  Y + +D+
Sbjct: 376  LENENKYKLITENSLDFISRSTIDCFTFLYCSPSCYALLGYRPEEMVGTSTFDYVYAEDI 435

Query: 254  LKTEK-YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
               +         +   P    +   +      +     +     +  E +S     S  
Sbjct: 436  APLQDYLENCLEGKMLTPITFRYIHKDGRHIWFEVNCKYISTQGGQKNEIISIARDISER 495

Query: 313  AYFD----EGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
               +    E E       +  P   + +   G+   AN +   LT Y   + I       
Sbjct: 496  KLMEFKLKESEQRYRSLFEYNPSAVYSMNLDGDYITANQNLQELTGYTLDELIG------ 549

Query: 368  TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
             +   P +++ +  + +  +   +  I  S  L  I  +       T       +   E 
Sbjct: 550  -MYFGPIVAEKDMARTLFHFNQAKEGIPQSYDLTIIHKDGRPIEINTINIPIFVD--DEV 606

Query: 428  MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
            +   GI  +  +      +++    +L  +L   S+GI  ++  G +   N A + +  Y
Sbjct: 607  VGVYGITRDITERIRTMEEIKKLSRELTLLLNTVSEGIIGLDIHGQVAFINPAGAAMLDY 666

Query: 488  PVEDILRKPFTVFLEQNTP-----SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
                 + +P    +++           +  L + +   +  +  +I L    +       
Sbjct: 667  EPATTIGRPCDQIIKEIRHDGTFYRGEDSPLVQAVKQGIPLSRAEIVLWR-GDGTSFLAD 725

Query: 543  IIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
              +  +          +   DI++    + ++  AK+ AE+    K++FL  +SHE+RTP
Sbjct: 726  YQVNPIWDQGERKGAVMVFRDITD----EKEIIRAKENAERADQAKTEFLTMMSHELRTP 781

Query: 600  LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
            +  IIG  E++         +     Y + +  S   +L I+N++LD SKIE+G M L+ 
Sbjct: 782  MNGIIGMIELLSTTEL----DEDQQNYIHILMESSGSLLHILNEILDFSKIETGNMTLNH 837

Query: 660  EPVSLDEAVSEAISLVQLYANEKRILIRTSF-ANNIPRIL-ADLRSVKQIALNILSNAIH 717
            EP+ L   +   + L    A EK + +  +  + N+P ++  D   ++Q+ +N++SNAI 
Sbjct: 838  EPIDLRSLLEVVVDLFSAKAKEKGLSLSFNINSANVPDVIIGDALRLRQVLVNLISNAIK 897

Query: 718  FTPSGGQIIISTTH-----TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
            FT  G  I ++        T    +  +V+DTG+G+      +    F Q+  S   +  
Sbjct: 898  FTHEGS-ITLNVEGLRRTGTQEFTLAFQVKDTGIGIAPELQHQLFTSFSQLHPSLNRKYG 956

Query: 773  GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
            GTGLGL ++K +V+   G   + S    G+      P +     H
Sbjct: 957  GTGLGLAISKKLVELMGGVIGVESRENVGSSFYFTIPTHTLQDVH 1001



 Score =  137 bits (346), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 48/506 (9%), Positives = 134/506 (26%), Gaps = 27/506 (5%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150
           A G ++ IS      +G    +M+G         +  +     G L    +++     + 
Sbjct: 155 ADGIIEYISPSATDILGYTQEEMMGQHRGKYYHQVDSEQMKEPGKLFSENDSF--VRRIR 212

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
             EG   Y+  + +   I     E       G                   +        
Sbjct: 213 HKEGH--YLWFETSFQLIRGAQGEIDKVLAIG--RNITKRKTDEDTLAHAQRIAKIGSWR 268

Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270
               +       ++        +    N  + ++       + L  E+      +  +  
Sbjct: 269 WDLITHTLTYSDEMRRIYGYQINAIEPNHDTLMSLVIPEDRERL--EQVVRTAVQGRADE 326

Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330
                   +    T +  +     N     E +      +     ++             
Sbjct: 327 IIYRIQLKDGQIRTIRAQWEVTVTNEGRPMEMVGMAQDITEQVMIEQQSLENENKYKLIT 386

Query: 331 IPFFVY------SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
                +            Y +PS   L  Y+  + +       T       +++ A    
Sbjct: 387 ENSLDFISRSTIDCFTFLYCSPSCYALLGYRPEEMVG------TSTFDYVYAEDIAPLQD 440

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
            L       +        I  +  +           + Q  +      I  +  + ++ +
Sbjct: 441 YLENCLEGKMLTPITFRYIHKDGRHI-WFEVNCKYISTQGGQKNEIISIARDISERKLME 499

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            K++    +  S+ E     +  +N +G  ++ N+ + +L GY +++++   F   + + 
Sbjct: 500 FKLKESEQRYRSLFEYNPSAVYSMNLDGDYITANQNLQELTGYTLDELIGMYFGPIVAEK 559

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDI 561
             +    +  +      +           K+ + + +  I   +              DI
Sbjct: 560 DMARTLFHFNQAKEGIPQS---YDLTIIHKDGRPIEINTINIPIFVDDEVVGVYGITRDI 616

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSD 587
           +E  +   ++    +      +  S+
Sbjct: 617 TERIRTMEEIKKLSRELTLLLNTVSE 642



 Score =  108 bits (271), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 59/496 (11%), Positives = 154/496 (31%), Gaps = 33/496 (6%)

Query: 98  ISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL-KRQNTWYGKTTLWPIEGTN 156
           +++   +   +    ++ ++  ++  + ++     +  L+    +T   ++     +G  
Sbjct: 34  VNDRFCEITESKRSDLLQLKPSEIQVLSNLSFQQILQSLIYDPTSTLSRESYFIRQDGRQ 93

Query: 157 LYVPIDLAAL--PIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214
           ++V + ++ L  P   R          G V              + D+  + + +  +  
Sbjct: 94  VHVAVSISLLEPPSRDRTPWIMCCLEPGTVQEGTTLP----PIIKNDELLALISKSGQDL 149

Query: 215 SSVEKEKYDIFSQQSPPPHL---RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271
            S+      I         +     +  +      Y H+ D  + ++   L SE  S   
Sbjct: 150 ISISSADGIIEYISPSATDILGYTQEEMMGQHRGKYYHQVDSEQMKEPGKLFSENDSF-- 207

Query: 272 QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI 331
                    +    +  F  ++    E  + L+   + +     ++             I
Sbjct: 208 VRRIRHKEGHYLWFETSFQLIRGAQGEIDKVLAIGRNITKRKTDEDTLAHAQRIAK---I 264

Query: 332 PFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389
             + +      L Y +     +  Y+ ++ IE        L  P+  D   ++ V+    
Sbjct: 265 GSWRWDLITHTLTY-SDEMRRIYGYQ-INAIEPNHDTLMSLVIPE--DRERLEQVVRTAV 320

Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449
                 A   ++ IQ        +              M   G+  +  +  + +++   
Sbjct: 321 QGR---ADEIIYRIQLKDGQIRTIRAQWEVTVTNEGRPMEMVGMAQDITEQVMIEQQSLE 377

Query: 450 EVMQLCSILEATSDGI--AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
              +   I E + D I  + I+     L  + +   L GY  E+++      ++     +
Sbjct: 378 NENKYKLITENSLDFISRSTIDC-FTFLYCSPSCYALLGYRPEEMVGTSTFDYVYAEDIA 436

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISE 563
            +  YL   L   +   +    +   K+ + +   +  K +               DISE
Sbjct: 437 PLQDYLENCLEGKMLTPITFRYI--HKDGRHIWFEVNCKYISTQGGQKNEIISIARDISE 494

Query: 564 WKQEKNKLSHAKKIAE 579
            K  + KL  +++   
Sbjct: 495 RKLMEFKLKESEQRYR 510



 Score = 67.7 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 51/342 (14%), Positives = 105/342 (30%), Gaps = 47/342 (13%)

Query: 323 PETVDKCPIP-FFVYSHGN-LFYANPSFLLLTKYKSVDDIE----IAGGLSTLLDAPKL- 375
            +  DK P     + +    +   N  F  +T+ K  D ++        LS L     L 
Sbjct: 11  EQMFDKLPFGAILISAVDEPVAMVNDRFCEITESKRSDLLQLKPSEIQVLSNLSFQQILQ 70

Query: 376 -----SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
                  +   +     R D   +  +  +  ++    +         E           
Sbjct: 71  SLIYDPTSTLSRESYFIRQDGRQVHVAVSISLLEPPSRDRTPWIMCCLEPGTVQEGTTLP 130

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490
             I+ +                 L  I ++  D I+I + +GII   + + + + GY  E
Sbjct: 131 PIIKND---------------ELLALISKSGQDLISISSADGIIEYISPSATDILGYTQE 175

Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
           +++ +    +  Q     M          D       +     KE   L      + +  
Sbjct: 176 EMMGQHRGKYYHQVDSEQMKEPGKLFSENDS-----FVRRIRHKEGHYLWFETSFQLIRG 230

Query: 551 SSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV--SHEIRTPLTAII 604
           +            +I++ K +++ L+HA++IA+  S         +  S E+R     I 
Sbjct: 231 AQGEIDKVLAIGRNITKRKTDEDTLAHAQRIAKIGSWRWDLITHTLTYSDEMR----RIY 286

Query: 605 GFSEVIKNQRFGPLGN---PRYIEYANYIDRSG--NLVLDIV 641
           G+           L +   P   E    + R+       +I+
Sbjct: 287 GYQINAIEPNHDTLMSLVIPEDRERLEQVVRTAVQGRADEII 328



 Score = 46.6 bits (109), Expect = 0.019,   Method: Composition-based stats.
 Identities = 27/271 (9%), Positives = 69/271 (25%), Gaps = 27/271 (9%)

Query: 74  FVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI 133
           F ++P        ++++  G     ++ L +  G    ++IGM    +     +      
Sbjct: 513 FEYNPSA-----VYSMNLDGDYITANQNLQELTGYTLDELIGMYFGPIVAEKDMARTLFH 567

Query: 134 GDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAA--LPIYSRNREFSGFRGFGIVHVNRVDN 191
            +  K         T+   +G     PI++    +PI+  + E  G   +GI        
Sbjct: 568 FNQAKEGIPQSYDLTIIHKDGR----PIEINTINIPIFVDD-EVVGV--YGITRDITERI 620

Query: 192 DPRALGKRLDKKFSHLHEIKK----------GHSSVEKEKYDIFSQQSPPPHLRMKNKVS 241
                 K+L ++ + L                 + +      +   +      R  +++ 
Sbjct: 621 RTMEEIKKLSRELTLLLNTVSEGIIGLDIHGQVAFINPAGAAMLDYEPATTIGRPCDQII 680

Query: 242 SLTEYY-AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY--FGTLQNNSKE 298
               +               +      S  E   +     +     Q             
Sbjct: 681 KEIRHDGTFYRGEDSPLVQAVKQGIPLSRAEIVLWRGDGTSFLADYQVNPIWDQGERKGA 740

Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
              +    +   +    +  E       +  
Sbjct: 741 VMVFRDITDEKEIIRAKENAERADQAKTEFL 771


>gi|255034075|ref|YP_003084696.1| PAS/PAC sensor hybrid histidine kinase [Dyadobacter fermentans DSM
           18053]
 gi|254946831|gb|ACT91531.1| PAS/PAC sensor hybrid histidine kinase [Dyadobacter fermentans DSM
           18053]
          Length = 1287

 Score =  395 bits (1015), Expect = e-107,   Method: Composition-based stats.
 Identities = 132/742 (17%), Positives = 262/742 (35%), Gaps = 39/742 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWY 144
            + I   G    +S       G+   + +G    +             +    +      
Sbjct: 273 LFTISPDGVFTYVSPSWTSMYGHTVEETVGRSFTEFIHPEDFHICFEALRITAETGVPVP 332

Query: 145 G--KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
           G  +  +   +G+  +        P+               +  +R      A+      
Sbjct: 333 GGVEHRIRHRDGSWSWSNTSANIDPV--SKNIILTSHDITELRNSRERLKELAIVASNTT 390

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
            +  + + K   + V K               +    +    E      D +  +     
Sbjct: 391 DYIVITDHKGFITWVNKAYETHTGYNRKEVEGKNPLLLLQGPETDHETLDRIWADCKNKK 450

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
              E  L      +T N  +Y        + ++      +++   + +     D+     
Sbjct: 451 VVREEVL-----CYTKNGEKYWVDLKITPVFDDYGNCSNFIAVERNITARKESDQEMKRI 505

Query: 323 PETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGG-LSTLLDAPKLSDNNAI 381
            + + +      V   G   YA  +  L     + +  E+    + +   A       A 
Sbjct: 506 KDILQQTNSVAVV--GGWELYA-RTGELYWSSTTREIHEVDPDYVPSTETAIGFYKEGAS 562

Query: 382 KPVMLYRSDRTC---IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
           +  +    ++           L  +          T    E  +     +   G   +  
Sbjct: 563 REAIARAVEKGLSYGTPWDNELQIVTAKGNERWVRTIGKAEMVDGVC--VRIYGAFQDIT 620

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK--- 495
             +  + ++     +  S+ ++TSD + + +  G  L  N A  K+FG    D+L K   
Sbjct: 621 HRKQAEVEILNSEAKFRSLYDSTSDAVILFDHTG-YLDCNDAALKMFGIDSVDMLMKMPM 679

Query: 496 -PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST----KEEKLLSLRIIIKKLPF 550
              +   E    +  N     +  +    T             KE  +  + + + K+  
Sbjct: 680 GDLSGLNEPGMEAARNDGCRHVREVYENGTHNFEWKYKRFGESKESFIAEVLLNLMKVNG 739

Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
                  + DI+  K+ + +L  A++ AE  S  KS+FLA +SHEIRTPL  ++GF++++
Sbjct: 740 KEIIQAVIRDITIRKRAELELLEAREHAEAASKLKSEFLANMSHEIRTPLNGVVGFTDLL 799

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
                    +    +Y + + +S N ++DI+ND+LD SKIE+GK+ L  E   L E    
Sbjct: 800 MKTNL----DETQQQYMSMVFQSANSLMDIINDILDFSKIEAGKLELTPEKTDLLEICGR 855

Query: 671 AISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
              +V   A +K + +  +   +IPR +  D   ++QI +N+LSNA+ FT  G +I +  
Sbjct: 856 VADMVTYQAQQKHLEMLLNIPADIPRFVWCDSVRLRQILVNLLSNAVKFTIKG-EIELKI 914

Query: 730 THTS-----NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
              +     +      VRDTG+G+      +  + F Q  +S   R  GTGLGL ++ ++
Sbjct: 915 ELLNKVSGLDYTFRFSVRDTGIGIDPQNQRRIFEAFSQEDSSTTKRFGGTGLGLTISNSL 974

Query: 785 VDANMGKFYIFSTPAKGTLIEI 806
           +     +  + S   KG+    
Sbjct: 975 LGLMESRLQLTSELEKGSTFFF 996



 Score = 89.3 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 68/237 (28%), Gaps = 13/237 (5%)

Query: 335 VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394
           +   GN  Y N  F    +    + I  +           +     +          T  
Sbjct: 156 IDLEGNYKYVNDHFCEFFRLDRSEIIGRSSISGV--VPEDIPKCLEVGEQCFIN-PGTPN 212

Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
               R ++     E      +     A++         +  +       +         L
Sbjct: 213 PVVLRKYS---AGEGVKTTQWEFTGIADENGVVTEIFCLGYDITQQLKVQ-------EDL 262

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
             ++    D +  I+ +G+    + + + ++G+ VE+ + + FT F+      +    L 
Sbjct: 263 SVLVSNMQDVLFTISPDGVFTYVSPSWTSMYGHTVEETVGRSFTEFIHPEDFHICFEALR 322

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571
                 +            ++             P S    LT HDI+E +  + +L
Sbjct: 323 ITAETGVPVPGGVEHRIRHRDGSWSWSNTSANIDPVSKNIILTSHDITELRNSRERL 379



 Score = 81.2 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 55/502 (10%), Positives = 136/502 (27%), Gaps = 39/502 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL-LKRQNTWYGKT 147
           ID  G  K +++   +       ++IG           I     +G+       T     
Sbjct: 156 IDLEGNYKYVNDHFCEFFRLDRSEIIGRSSISGVVPEDIPKCLEVGEQCFINPGTPNPVV 215

Query: 148 TLWPIEGTNLYVPI-DLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                 G  +     +   +     N   +    F + +          + + L    S+
Sbjct: 216 LRKYSAGEGVKTTQWEFTGIA--DENGVVT--EIFCLGYDIT---QQLKVQEDLSVLVSN 268

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
           + ++    S      Y   S  S   H   +    S TE+   +D  +  E   +     
Sbjct: 269 MQDVLFTISPDGVFTYVSPSWTSMYGHTVEETVGRSFTEFIHPEDFHICFEALRITAETG 328

Query: 267 SSLPE--QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
             +P   +      + +         T  N    S   +   +  +      E       
Sbjct: 329 VPVPGGVEHRIRHRDGSWSWSN----TSANIDPVSKNIILTSHDITELRNSRERLKELAI 384

Query: 325 TVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
                     +    G + + N ++   T Y   +     G    LL     +D+  +  
Sbjct: 385 VASNTTDYIVITDHKGFITWVNKAYETHTGYNRKEV---EGKNPLLLLQGPETDHETLDR 441

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
           +     ++  +      +T          +        + +        +E      + +
Sbjct: 442 IWADCKNKKVVREEVLCYT---KNGEKYWVDLKITPVFDDYGNCSNFIAVERNITARKES 498

Query: 444 KRKMEIEVMQLCSILEATSDGIA----IINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
            ++M+     L    +  S  +     +  R G  L  +    ++     + +      +
Sbjct: 499 DQEMKRIKDILQ---QTNSVAVVGGWELYARTGE-LYWSSTTREIHEVDPDYVPSTETAI 554

Query: 500 FLEQN--TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT 557
              +   +   +   + + LS       E   + +   E+ +     I K        + 
Sbjct: 555 GFYKEGASREAIARAVEKGLSYGTPWDNELQIVTAKGNERWVR---TIGKAEMVDGVCVR 611

Query: 558 ----MHDISEWKQEKNKLSHAK 575
                 DI+  KQ + ++ +++
Sbjct: 612 IYGAFQDITHRKQAEVEILNSE 633


>gi|218441882|ref|YP_002380211.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
 gi|218174610|gb|ACK73343.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
          Length = 955

 Score =  395 bits (1015), Expect = e-107,   Method: Composition-based stats.
 Identities = 126/742 (16%), Positives = 266/742 (35%), Gaps = 49/742 (6%)

Query: 97  EISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTN 156
                L +  G     ++   + +V  +   +        L+   +         +    
Sbjct: 91  YWGSHLSQVYGLPTD-ILKKSIQEVISVSVGEQITEAFARLQVGQSLVNLEYSLVVNEQE 149

Query: 157 LYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSS 216
            +  I L  L       +   F G  I+             +  +  +  + E       
Sbjct: 150 EFYEIRLVNL------SQPEHFLG--IIRNISNCKRVELQLRHNEHLYRAIGETIDYGIW 201

Query: 217 VEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLKT-EKYPLLTSEESSLPEQ 272
           V +                 L  +   +       H DD  +T   +   +   S    +
Sbjct: 202 VCQPDGRNIYASESFLNLVGLTQEECSNFGWGNVLHPDDAQETISAWKECSRIGSFWDRE 261

Query: 273 EDFHTINLNQYTKKQYFGTLQNNSKESFEY----LSHRNHPSLSAYFDEGENLTPETVDK 328
             +  ++   +        +++ + +   +    L             E E       D 
Sbjct: 262 HRYRGVDGQWHPILARGVPVRDANGDIICWAGINLDISRLKQTEEKLRESEERFRILADS 321

Query: 329 CPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
            P+  ++    G   + N ++L       + +++       L        ++A    +  
Sbjct: 322 APVLIWMNGFEGGCEFVNKAYLDFFGKT-LSEVQGLAWSDYL------HPDDASYIQVYL 374

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
           ++ +      A+    + +      +      + +   E +   G   +  + +  +  +
Sbjct: 375 KTFKERQPFRAQGRFKRADG-QYRWLESRANPRFSSTGEFLGYIGTSSDISEIKEAEEAL 433

Query: 448 EIEVMQLCSILEATSDGIAII-----NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
                +  ++     D I +         G  +  N    K  GY  E++L+      + 
Sbjct: 434 LQREQRFSTLFNGMEDWILVYPVTEEGHPGNFIEVNEQACKKLGYSREELLQMSVRDIVN 493

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK--LPFSSCYSLTMHD 560
               +   ++   + +      L   ++  TK+ + + + +      L           D
Sbjct: 494 TLFINAEINFKKLLSAKH----LVLESVHRTKDGENIPVEVSATLFTLNGLPTVQAICRD 549

Query: 561 ISEWKQEKNKLSH-------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
           I+E KQ + +  +       A+++AE  +  K +FLA +SHE+R+PL  I+G+++++   
Sbjct: 550 ITERKQIEQERENLLIQEQAAREVAESANRIKDEFLAVLSHELRSPLNPILGWAKLLNTH 609

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
              P  +    +  + I+R+  L  +++ DLLD+S+I  GK+ L    V+L   +  AI 
Sbjct: 610 TLEPATH---QKALSIIERNAQLQAELIEDLLDVSRILRGKLTLKIVSVNLGFIIDSAIE 666

Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
            ++L A  K I I+T    NI  +L D   ++QI  N+LSNA+ FTP+GG++ I   ++ 
Sbjct: 667 TIRLAAQAKNIQIQTKLDPNIGEVLGDPARLQQIVWNLLSNAVKFTPTGGKVEIEL-NSL 725

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
                +RV DTG G+T+  L      F Q  ++      G GLGL +A+ +V+ + G   
Sbjct: 726 GNWAKIRVTDTGKGITSDFLPHIFDYFRQADSTTTRIFGGLGLGLAIARHLVELHGGTIK 785

Query: 794 IFS-TPAKGTLIEIIFPLYDTS 814
             S    +G    +  PL   +
Sbjct: 786 AESLGEGQGATFIVKLPLIPET 807



 Score =  103 bits (256), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 48/397 (12%), Positives = 99/397 (24%), Gaps = 28/397 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNT-WY 144
            W     G     SE     +G    +       +V                 R  + W 
Sbjct: 200 IWVCQPDGRNIYASESFLNLVGLTQEECSNFGWGNVLHPDDAQETISAWKECSRIGSFWD 259

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            +     ++G   + PI    +P+   N +   + G  +              +  +++F
Sbjct: 260 REHRYRGVDG--QWHPILARGVPVRDANGDIICWAGINL--DISRLKQTEEKLRESEERF 315

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSP---PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
             L +       +   +                 +          Y H DD    + Y  
Sbjct: 316 RILADSAPVLIWMNGFEGGCEFVNKAYLDFFGKTLSEVQGLAWSDYLHPDDASYIQVYLK 375

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE---- 317
              E      Q  F   +      +       +++ E   Y+   +  S     +E    
Sbjct: 376 TFKERQPFRAQGRFKRADGQYRWLESRANPRFSSTGEFLGYIGTSSDISEIKEAEEALLQ 435

Query: 318 GENLTPETVDKCPIPFFVY------SHGNLFYANPSFLLLTKYKSVDDIE--IAGGLSTL 369
            E       +       VY        GN    N        Y   + ++  +   ++TL
Sbjct: 436 REQRFSTLFNGMEDWILVYPVTEEGHPGNFIEVNEQACKKLGYSREELLQMSVRDIVNTL 495

Query: 370 LDAPK------LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
               +      LS  + +   +    D   I           N   ++        +  Q
Sbjct: 496 FINAEINFKKLLSAKHLVLESVHRTKDGENIPVEVSATLFTLNGLPTVQAICRDITERKQ 555

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
             E   +N +  E     + +    I   +  ++L  
Sbjct: 556 I-EQERENLLIQEQAAREVAESANRI-KDEFLAVLSH 590



 Score = 65.0 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 43/139 (30%), Gaps = 5/139 (3%)

Query: 69  DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID 128
           +SE  F        V   W     G  + +++      G    ++ G+   D        
Sbjct: 310 ESEERFRILADSAPV-LIWMNGFEGGCEFVNKAYLDFFGKTLSEVQGLAWSDYLHPDDAS 368

Query: 129 PNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNR 188
                    K +  +  +      +G   Y  ++  A P +S   EF G+   G      
Sbjct: 369 YIQVYLKTFKERQPFRAQGRFKRADG--QYRWLESRANPRFSSTGEFLGY--IGTSSDIS 424

Query: 189 VDNDPRALGKRLDKKFSHL 207
              +      + +++FS L
Sbjct: 425 EIKEAEEALLQREQRFSTL 443



 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/321 (11%), Positives = 91/321 (28%), Gaps = 22/321 (6%)

Query: 28  KKIDNGFETEKSKKENPCHDSFEQSNF--TDQNQESVSNTNYLDSENTFVFDP---IPRT 82
           K+ D  +   +S+       + E   +  T  +   +        +    F         
Sbjct: 390 KRADGQYRWLESRANPRFSSTGEFLGYIGTSSDISEIKEAEEALLQREQRFSTLFNGMED 449

Query: 83  VRFTWNIDAHG---YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR 139
               + +   G      E++E+  K +G    +++ M + D+ + L I+   +   LL  
Sbjct: 450 WILVYPVTEEGHPGNFIEVNEQACKKLGYSREELLQMSVRDIVNTLFINAEINFKKLLSA 509

Query: 140 QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF-GIVHVNRVDNDPRALGK 198
                 ++     +G N  +P++++A          +G      I              +
Sbjct: 510 -KHLVLESVHRTKDGEN--IPVEVSATL-----FTLNGLPTVQAICRDITERKQIEQERE 561

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKN-----KVSSLTEYYAHKDDV 253
            L  +     E+ +  + ++ E   + S +   P   +          +L      K   
Sbjct: 562 NLLIQEQAAREVAESANRIKDEFLAVLSHELRSPLNPILGWAKLLNTHTLEPATHQKALS 621

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
           +      L       L +        L         G + +++ E+    +   +  +  
Sbjct: 622 IIERNAQLQAELIEDLLDVSRILRGKLTLKIVSVNLGFIIDSAIETIRLAAQAKNIQIQT 681

Query: 314 YFDEGENLTPETVDKCPIPFF 334
             D           +     +
Sbjct: 682 KLDPNIGEVLGDPARLQQIVW 702


>gi|21228620|ref|NP_634542.1| sensory transduction histidine kinase [Methanosarcina mazei Go1]
 gi|20907118|gb|AAM32214.1| Sensory transduction histidine kinases [Methanosarcina mazei Go1]
          Length = 702

 Score =  395 bits (1015), Expect = e-107,   Method: Composition-based stats.
 Identities = 118/529 (22%), Positives = 222/529 (41%), Gaps = 31/529 (5%)

Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLL 350
           +++                      E E    + V+       +    G +   N +   
Sbjct: 175 IRDKELFFINVYDITASKKAERELIESEEKFKQVVELSVDGIIIGTDSGKIVDCNGAACR 234

Query: 351 LTKYKSVDDI---------EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401
           +  Y   + +              ++  + +   +        +  + D T   A     
Sbjct: 235 IFGYDKEEILKLQVIDLFPGDLNIIAHDITSCNKAAGEKTVERINQKKDGTSFPAEVAAR 294

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
            ++   E  L +                      +  + +  ++ ++       +++  T
Sbjct: 295 RVKLGNEEGLIVYVR-------------------DITERKKAEKALKESEENFRTLVNNT 335

Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
            DGI I++ EG +L+ N A+ K+ G  +E +       +L   +  V       +L+   
Sbjct: 336 LDGILILDFEGRVLAANAAIGKMLGMELEKVAGIDIMKYLAPESVPVAVEDQINVLNGRG 395

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE 581
                  +     E   +                + + DI+  K+ +  L +AK  AE  
Sbjct: 396 GYLSVYKSTSCNGEPLWIEGLGTKIIYRGQPANIVVIRDITARKKAEEALINAKTAAEAA 455

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
           +  KS+FL  +SHE++TPL +IIGFS+++     GPL N +   YA +I  +G  +L+I+
Sbjct: 456 NRTKSEFLTNMSHELKTPLNSIIGFSDLLIEGIAGPL-NEKQSRYAGFISSNGKNLLNII 514

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701
           N +L++SK+ES    L  +  S++E+++++IS       +K I +  +  ++   I AD 
Sbjct: 515 NGILELSKVESEGDELTLQEFSVNESINKSISTALPQILKKNIKLNYNSDSDPLCIFADE 574

Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761
              +QI  ++L+NA+ FTP  G I IS +      V ++V+DTG+G+    L+K  KPF 
Sbjct: 575 NKFRQIMESLLNNAVKFTPEDGLIDIS-SKQEGGIVTIKVKDTGIGIPEDSLDKIFKPFI 633

Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           Q+ +S     EGTGLGL LAK  V+ + G   + S   KG+  ++  P+
Sbjct: 634 QLESSLSRTFEGTGLGLTLAKKYVEMHGGNISVESKTGKGSSFKVELPV 682



 Score = 77.8 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 34/369 (9%), Positives = 90/369 (24%), Gaps = 29/369 (7%)

Query: 89  IDAHG-YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL--LKRQNTWYG 145
           +D     + + ++      G    +M   ++ D++ +   + N  I     L+++  +Y 
Sbjct: 96  VDPESYRIVDANDPACAYYGYTYEEMTAKKISDIN-VFSEEKNKEITRQVFLEKRGHFY- 153

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
            +      G   +V + +  + I  +         F  V+               ++KF 
Sbjct: 154 -SCHKLASGEIRHVEVYINTVNIRDKE------LFFINVYDITASKKAERELIESEEKFK 206

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
            + E+      +  +   I               +  +          D  +        
Sbjct: 207 QVVELSVDGIIIGTDSGKIVDCNGAACRIFGYDKEEILKLQVIDLFPGDLNIIAHDITSC 266

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGT--LQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
                    +      +   +  +       L N                      E E 
Sbjct: 267 NKAAGEKTVERINQKKDGTSFPAEVAARRVKLGNEEGLIVYVRDITERKKAEKALKESEE 326

Query: 321 LTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL-LDAPKLSDN 378
                V+       +    G +  AN +   +       ++E   G+  +   AP+    
Sbjct: 327 NFRTLVNNTLDGILILDFEGRVLAANAAIGKMLGM----ELEKVAGIDIMKYLAPESVPV 382

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
                + +       ++      +   N E                P N     +  +  
Sbjct: 383 AVEDQINVLNGRGGYLSV---YKSTSCNGEPLWIEGLGTKIIYRGQPAN---IVVIRDIT 436

Query: 439 DTRINKRKM 447
             +  +  +
Sbjct: 437 ARKKAEEAL 445



 Score = 64.7 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 15/141 (10%), Positives = 47/141 (33%), Gaps = 3/141 (2%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILRKPFTV 499
           + N   ++    +       +     +++ E   I+  N      +GY  E++  K  + 
Sbjct: 69  KKNYEALQESESRYRQFFNNSPAVTLLVDPESYRIVDANDPACAYYGYTYEEMTAKKISD 128

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH 559
               +            L               + E + + + I    +     + + ++
Sbjct: 129 INVFSEEKNKEITRQVFLEKRGHFYSCHKLA--SGEIRHVEVYINTVNIRDKELFFINVY 186

Query: 560 DISEWKQEKNKLSHAKKIAEK 580
           DI+  K+ + +L  +++  ++
Sbjct: 187 DITASKKAERELIESEEKFKQ 207


>gi|307152445|ref|YP_003887829.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306982673|gb|ADN14554.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 1566

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 137/831 (16%), Positives = 266/831 (32%), Gaps = 54/831 (6%)

Query: 26   SKKKIDNGFETEKSKKE--NPCHDSFEQSNFT----DQNQESVSNTNYLDSENTFVFDPI 79
            + +KI   FE+           H    Q+       D  Q          SE  F     
Sbjct: 602  ASQKISVHFESPSLYARLWREVHIYPHQNGLAVYWRDITQRKQIEAALSQSETQFRQLAD 661

Query: 80   PRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI--GMRLCDVSDILHIDPNNHIGDLL 137
                +  W  +A G ++ ++++          +      ++        +          
Sbjct: 662  AMP-QIVWITNAAGKVEYLNQQWFDYTALPQNENSYNPEQIRSAIHPDDLSTIVESWKTA 720

Query: 138  KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG 197
                T Y             Y      A+ I     E      +G               
Sbjct: 721  FTNQTPYQSEFRLRRGRDGSYRWFLGRAVVIKGPQGEII--AWYGTSTDIDDYKQAELCI 778

Query: 198  KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP-----------HLRMKNKVSSLTEY 246
            ++ +   + L        S   +                          ++  +  +   
Sbjct: 779  RKKESLLNALIASSPIGISFFDQDLCYLYVNQALATINGVPLNEHLGRSLEEVLPLMAAE 838

Query: 247  YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
            +      +   + PLL  E        +F     N +      G +        +    +
Sbjct: 839  FRPLLTQILQTQQPLLNHEFMGEIIPGNFRHCLANHFPVCLPDGEVLGIGVTVMDITQLK 898

Query: 307  NHPSLSAYFD----EGENLTPETVDKCPIPFFV-YSHG-NLFYANPSFLLLTKYKSVDDI 360
               +     +    E        ++  P+  ++ +    +   AN +   L + K  D  
Sbjct: 899  QVEAALRASEATATERAQELETLMEITPVGLWIAHDPDCHSMSANQTAYQLMQAKPGDIA 958

Query: 361  EI--AGGLSTLLDAPKLSDNNA---IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
                  G   L    + +         P+ +       I          +       +  
Sbjct: 959  TATPPDGTYPLNFKQRRNGKEITPDDLPMQVAARSGQEITDEIEFV---FEDGTVRFIYG 1015

Query: 416  IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
                  N+  +     G   +  + +  +  +     +   + EA    + I N +G   
Sbjct: 1016 RAIPLTNESGQIRGVIGAFVDITERKQAEEALRQSEQRYRYLAEAIPQLVWITNSQGYNE 1075

Query: 476  STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
              N+ + +  G   E +L+  +   +               +  D     E        +
Sbjct: 1076 YVNQQMCEYTGLTFEQLLQFDWREIIHPEDIEQTYQKWMAAVEQD--GYYEMEYRLRNAQ 1133

Query: 536  EKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSH-------AKKIAEKESSH 584
             K          L         +  T  +I   KQ + +          A++ AE+ +  
Sbjct: 1134 GKYQWYLGRAIPLKNEQGKIVKWFGTSTNIDAQKQLEAQRESLLSLERAAREQAEEANRI 1193

Query: 585  KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
            K +FLA +SHE+R+PL  I+G++++++ Q F       Y +  + I+R+  L   ++ DL
Sbjct: 1194 KDEFLAVLSHELRSPLNPILGWAKLLQTQNFNA---ETYQKGLSTIERNAALQAQLIEDL 1250

Query: 645  LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704
            LDIS+I  GK+NL   PV+L   +  A+  V+L A  K I I+      + ++L D   +
Sbjct: 1251 LDISRIMRGKLNLKIVPVNLIFIIESALETVRLAAEAKTINIQKDLDLTVGKVLGDTARL 1310

Query: 705  KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764
            +QI  N+LSNA+ FTP+GGQ+ +    +   E ++ V DTG G++   L      F Q  
Sbjct: 1311 QQIVWNLLSNAVKFTPTGGQVNVKLEGS-GNEAVITVSDTGQGISANFLPYVFDYFRQAD 1369

Query: 765  NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFPLYDTS 814
            +    +  G GLGL + + +V+ + G     S    +G    +  PL +  
Sbjct: 1370 SKTTRKFGGLGLGLAIVRHLVELHGGTVTANSPGENQGATFSVKLPLINQD 1420



 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 52/535 (9%), Positives = 133/535 (24%), Gaps = 52/535 (9%)

Query: 87   WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK 146
            +++D       +++E  +       + +G  + +V   L    N+     L R+      
Sbjct: 551  FSLDHQWRFTYVNQETERLCQKTREEFLGHSIWEVYPEL---INSEFDQQL-RRAASQKI 606

Query: 147  TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIV-HVNRVDNDPRALGKRLDKKFS 205
            +  +        +  ++   P  +         G  +            A   + + +F 
Sbjct: 607  SVHFESPSLYARLWREVHIYPHQN---------GLAVYWRDITQRKQIEAALSQSETQFR 657

Query: 206  HLHEIKKGHSSVEKEKYDIFS-QQSPPPHLRMKNKVSSLTEYY------AHKDDVLKTEK 258
             L +       +      +    Q    +  +    +S                 +    
Sbjct: 658  QLADAMPQIVWITNAAGKVEYLNQQWFDYTALPQNENSYNPEQIRSAIHPDDLSTIVESW 717

Query: 259  YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS----LSAY 314
                T++     E       + +          ++    E   +                
Sbjct: 718  KTAFTNQTPYQSEFRLRRGRDGSYRWFLGRAVVIKGPQGEIIAWYGTSTDIDDYKQAELC 777

Query: 315  FDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
              + E+L    +   PI    +       Y N +   +      + +  +          
Sbjct: 778  IRKKESLLNALIASSPIGISFFDQDLCYLYVNQALATINGVPLNEHLGRS-------LEE 830

Query: 374  KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
             L    A    +L +  +T           +    N        F       E +     
Sbjct: 831  VLPLMAAEFRPLLTQILQTQQPLLNHEFMGEIIPGNFRHCLANHFPVCLPDGEVLGIGVT 890

Query: 434  EPEDVDTRINKRKMEIEV-------MQLCSILEATSDGIAI-INREGIILSTNRAVSKLF 485
              +    +  +  +            +L +++E T  G+ I  + +   +S N+   +L 
Sbjct: 891  VMDITQLKQVEAALRASEATATERAQELETLMEITPVGLWIAHDPDCHSMSANQTAYQLM 950

Query: 486  GYPVEDIL-------RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
                 DI          P      +N   +    L   ++    Q +        ++  +
Sbjct: 951  QAKPGDIATATPPDGTYPLNFKQRRNGKEITPDDLPMQVAARSGQEITDEIEFVFEDGTV 1010

Query: 539  LSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
              +      L               DI+E KQ +  L  +++     +      +
Sbjct: 1011 RFIYGRAIPLTNESGQIRGVIGAFVDITERKQAEEALRQSEQRYRYLAEAIPQLV 1065



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 50/468 (10%), Positives = 119/468 (25%), Gaps = 42/468 (8%)

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY 246
              + D R   KRL      +  +  G + +E    ++         +   +    L E 
Sbjct: 401 ADDNADMRDYIKRLLTDLYEVETVSDGIAVLEALARELPDLVLTDVMMPGLDGFELLREL 460

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS---KESFEYL 303
            A+ +            + E S  E       +             +  +          
Sbjct: 461 RANPNTRQIPIILLSARAGEPSRVEGLKAGADDYLIKPFSARELLARVETHLKMAQIREE 520

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEI 362
           +      L    +E        ++     FF   H     Y N     L +    + +  
Sbjct: 521 NAHREQQLRIEAEEARKEVINILETITDGFFSLDHQWRFTYVNQETERLCQKTREEFLGH 580

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
           +         P+L ++   + +    S +  +               S ++    + + +
Sbjct: 581 SIWE----VYPELINSEFDQQLRRAASQKISVHFE------------SPSLYARLWREVH 624

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
            +P          +    +  +  +     Q   + +A    + I N  G +   N+   
Sbjct: 625 IYPHQNGLAVYWRDITQRKQIEAALSQSETQFRQLADAMPQIVWITNAAGKVEYLNQQWF 684

Query: 483 KLFGYPVEDILRKP--FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
                P  +    P      +  +  S +        +       E       ++     
Sbjct: 685 DYTALPQNENSYNPEQIRSAIHPDDLSTIVESWKTAFTNQTPYQSEFRLR-RGRDGSYRW 743

Query: 541 LRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS--- 593
                  +         +  T  DI ++KQ +      +K     ++  +     +S   
Sbjct: 744 FLGRAVVIKGPQGEIIAWYGTSTDIDDYKQAE---LCIRKKESLLNALIASSPIGISFFD 800

Query: 594 HEI-----RTPLTAIIG--FSEVIKN--QRFGPLGNPRYIEYANYIDR 632
            ++        L  I G   +E +    +   PL    +      I +
Sbjct: 801 QDLCYLYVNQALATINGVPLNEHLGRSLEEVLPLMAAEFRPLLTQILQ 848



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 47/399 (11%), Positives = 102/399 (25%), Gaps = 21/399 (5%)

Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD 252
           P A    L    S   E+   +           S           + +S  T       D
Sbjct: 288 PLAQLGWLIVGISPRRELDDHYRGFFDLVSHHLSYALANAEAYETDMISLPTGLAHLPKD 347

Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
            +  +          +   +E    +       +        +          R    L+
Sbjct: 348 KVSHQGGLTFNKNNGNCFGEEALGGLP------EDKPTETVPDRAAIATVFGSRPRILLA 401

Query: 313 AYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
               +  +     +        V     +  A    L       V  +    G   L + 
Sbjct: 402 DDNADMRDYIKRLLTDLYEVETVSDGIAVLEALARELPDLVLTDV-MMPGLDGFELLREL 460

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
               +   I  ++L                      +   +      +     E   +  
Sbjct: 461 RANPNTRQIPIILLSARAGEPSRVEG-----LKAGADDYLIKPFSARELLARVETHLKMA 515

Query: 433 IEPEDVDTRINKRKMEIEVMQLC--SILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490
              E+   R  + ++E E  +    +ILE  +DG   ++ +      N+   +L     E
Sbjct: 516 QIREENAHREQQLRIEAEEARKEVINILETITDGFFSLDHQWRFTYVNQETERLCQKTRE 575

Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
           + L         +   S  +  L    S  +    E  +L +      L   + I     
Sbjct: 576 EFLGHSIWEVYPELINSEFDQQLRRAASQKISVHFESPSLYAR-----LWREVHIYP--H 628

Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
            +  ++   DI++ KQ +  LS ++    + +      +
Sbjct: 629 QNGLAVYWRDITQRKQIEAALSQSETQFRQLADAMPQIV 667



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 42/434 (9%), Positives = 120/434 (27%), Gaps = 28/434 (6%)

Query: 53   NFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFK 112
             F D  +   +      SE  + +       +  W  ++ GY + +++++ +  G    +
Sbjct: 1033 AFVDITERKQAEEALRQSEQRYRYLAEAIP-QLVWITNSQGYNEYVNQQMCEYTGLTFEQ 1091

Query: 113  MIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSR 171
            ++     ++     I+         +++   +  +  L   +G          A+P+ + 
Sbjct: 1092 LLQFDWREIIHPEDIEQTYQKWMAAVEQDGYYEMEYRLRNAQGKYQ--WYLGRAIPLKNE 1149

Query: 172  NREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231
              +    + FG            A  + L        E  +  + ++ E   + S +   
Sbjct: 1150 QGKIV--KWFGTSTNIDAQKQLEAQRESLLSLERAAREQAEEANRIKDEFLAVLSHELRS 1207

Query: 232  PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTK------ 285
            P   +    + L +      +  +     +  +        ED   I+     K      
Sbjct: 1208 PLNPIL-GWAKLLQTQNFNAETYQKGLSTIERNAALQAQLIEDLLDISRIMRGKLNLKIV 1266

Query: 286  --------KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS 337
                    +    T++  ++     +      ++     +   L     +          
Sbjct: 1267 PVNLIFIIESALETVRLAAEAKTINIQKDLDLTVGKVLGDTARLQQIVWNLLSNAVKFTP 1326

Query: 338  HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397
             G     N           +   +   G+S                    +     +  +
Sbjct: 1327 TGG--QVNVKLEGSGNEAVITVSDTGQGISANFLPYVFDYFRQADSKTTRKFGGLGLGLA 1384

Query: 398  ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
               H ++ +     A +       NQ      +  +  +D   + +   +     Q  SI
Sbjct: 1385 IVRHLVELHGGTVTANS----PGENQGATFSVKLPLINQDTIPKTDSTDITESHQQ-RSI 1439

Query: 458  LEATSDGIAIINRE 471
            L+ +   I +++ +
Sbjct: 1440 LQLSGMDILVVDDD 1453


>gi|291566207|dbj|BAI88479.1| two-component hybrid sensor and regulator [Arthrospira platensis
           NIES-39]
          Length = 1006

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 113/744 (15%), Positives = 254/744 (34%), Gaps = 56/744 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            W ID+      +++++   +G    ++    L    D        +     +       
Sbjct: 289 VWIIDSDSMTTFVNQQMANMLGYTQEEITQSSLFKFVDEQDYPIVENYLQRRREGIAEQH 348

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFG-IVHVNRVDNDPRALGKRLDKKF 204
           +       G    +   L+  PI+  ++    + G   I+                +K+F
Sbjct: 349 EFQFKRKNGDI--LWTILSTNPIFDDSK----YAGCCAIITDINYRKKAELAIAVSEKRF 402

Query: 205 SHLHEIKKGHSSV----------EKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254
             +         V              Y+    ++     +  +   +          + 
Sbjct: 403 QEIASTISQFFFVKCANSGQYIYLSPAYEKIWGRTCESLYQNPDSWLNTIYPEDRGAVIN 462

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS----HRNHPS 310
             EK      + + +  +      +       +    + N+      Y+       +   
Sbjct: 463 YQEKQH----QNNLVKREYRIIRNDGVIRWVYEEVNIIYNDDGSPLRYVGFAEDISDRKQ 518

Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
                 E E L    V+  P  F +Y     L + N   L  T +     I        L
Sbjct: 519 AELALAESEELLRLAVNHAPDIFVIYDSDRRLKFVNQRVLERTGWSEETFIGRRD--EEL 576

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
                         + L       +       TI    +    +        ++      
Sbjct: 577 FL-----PEETCHYLPLLEKTIQTLTIQIGEATITLPNQTPKTVIIKYLPLLDKQGRLSQ 631

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
             G+  +    +  ++K+     +  +  E  + G+A+++ +G  L  NR++ ++ GY  
Sbjct: 632 ILGLTFDITHYKQAEQKLRDSEERFRTAFEDAAIGMALLSSQGNCLKVNRSLCEMLGYQE 691

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
            ++L+                  + +++     +          K+  ++ + + +  + 
Sbjct: 692 AELLQLKCKDITHPEDYEQEVKSIKKLIE-GQVKYYYVEKRYLHKQGYVIWVLLSMSIVR 750

Query: 550 FSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
                   +     +ISE +  +                K++F++ VSHE+RTPLTAI G
Sbjct: 751 NIDGVPLYFIAQAQNISERRAVE--------------QMKNEFISVVSHELRTPLTAIQG 796

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
              ++ +  +       + ++          ++ +VND+LDI ++ SG++    E  S  
Sbjct: 797 SLGLLSSGLYDHKPQE-FHKFIEIALLETERLVRMVNDILDIERLNSGEVQFQMEACSAQ 855

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725
           E + + I+ +Q  A+   I +         ++ A   ++ Q   N++ NAI F+P    +
Sbjct: 856 ELMMQVINSLQAIAHRDSITL--EILPTSVQLWAARDAMLQTLTNLVGNAIKFSPPHTTV 913

Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
            +S  +  ++ V+ +VRD G G+   +L+     F Q+  S   +  GTGLGL + ++++
Sbjct: 914 TLS-AYPQDDMVLFQVRDQGRGIPPEKLKTIFSRFQQVDASDSRQKSGTGLGLSICQSII 972

Query: 786 DANMGKFYIFSTPAKGTLIEIIFP 809
           + + GK ++ S  AKG+      P
Sbjct: 973 EQHGGKIWVESQLAKGSTFYFTIP 996



 Score =  130 bits (327), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 67/569 (11%), Positives = 158/569 (27%), Gaps = 35/569 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCD--VSDILHIDPNNHIGDLLKRQNTW 143
            W  D    + + S++  +  G    +++G  + +  +      D  N     +      
Sbjct: 162 IW--DRKLRVIQWSKQAEEIFGWSESEVLGKSMNEWKLIFEEDSDRVNRETQTIFANQEK 219

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                          +  +      Y  + + +    +  V          A   + + K
Sbjct: 220 RRICINRNYRKDGSVIYCEWYNSNFYDESGKLNMLLSW--VQDISDRQKTEAALIKSEAK 277

Query: 204 FSHLHE-IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
              + E   +G   ++ +    F  Q     L    +  + +  +   D+         L
Sbjct: 278 LRTIIETTLEGVWIIDSDSMTTFVNQQMANMLGYTQEEITQSSLFKFVDEQDYPIVENYL 337

Query: 263 TSEESSLPEQEDFH--TINLNQYTKKQYFGTLQNNSKESFE---YLSHRNHPSLSAYFDE 317
                 + EQ +F     N +          + ++SK +                     
Sbjct: 338 QRRREGIAEQHEFQFKRKNGDILWTILSTNPIFDDSKYAGCCAIITDINYRKKAELAIAV 397

Query: 318 GENLTPETVDKCPIPFFV--YSHGNLFYANPSFLLLTKYKSVDDIEIAG-GLSTLLDAPK 374
            E    E        FFV   + G   Y +P++  +         +     L+T+    +
Sbjct: 398 SEKRFQEIASTISQFFFVKCANSGQYIYLSPAYEKIWGRTCESLYQNPDSWLNTIYPEDR 457

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
                    V+ Y+  +       R + I  N      +        N     +   G  
Sbjct: 458 -------GAVINYQEKQHQNNLVKREYRIIRNDGVIRWVYEEVNIIYNDDGSPLRYVGFA 510

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
            +  D +  +  +      L   +    D   I + +  +   N+ V +  G+  E  + 
Sbjct: 511 EDISDRKQAELALAESEELLRLAVNHAPDIFVIYDSDRRLKFVNQRVLERTGWSEETFIG 570

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC- 553
           +                 L + +     Q  E         +   ++ I    L      
Sbjct: 571 RRDEELFLPEETCHYLPLLEKTIQTLTIQIGEATITL--PNQTPKTVIIKYLPLLDKQGR 628

Query: 554 ---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE-----IRTPLTAIIG 605
                    DI+ +KQ + KL  +++         +  +A +S +     +   L  ++G
Sbjct: 629 LSQILGLTFDITHYKQAEQKLRDSEERFRTAFEDAAIGMALLSSQGNCLKVNRSLCEMLG 688

Query: 606 F--SEVIKNQRFGPLGNPRYIEYANYIDR 632
           +  +E+++ +         Y +    I +
Sbjct: 689 YQEAELLQLKCKDITHPEDYEQEVKSIKK 717



 Score =  122 bits (306), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 42/380 (11%), Positives = 117/380 (30%), Gaps = 13/380 (3%)

Query: 214 HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE 273
            +            + P     +  K   +    AH   +L  E   +  +  +   +  
Sbjct: 43  VAKHIPPDLIFLDVKLPDTDGYLIAKQLQVHTVTAHVRILLLAESKSVFRAIRAFNLQVA 102

Query: 274 DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF 333
           D     L+    +             +   +  N  S +       +     +D  P+  
Sbjct: 103 DVLIYPLDFEEVQWRIE--MQLLSSPYRRDNLTNQLSTTHSLKSVNHQLKILIDNSPLGT 160

Query: 334 FVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
            ++     +   +     +  +   + +  +     L+        N     +    ++ 
Sbjct: 161 IIWDRKLRVIQWSKQAEEIFGWSESEVLGKSMNEWKLIFEEDSDRVNRETQTIFANQEKR 220

Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
            I  +      + +        +      ++  +         +  D +  +  +     
Sbjct: 221 RICIN---RNYRKDGSVIYCEWYNSNF-YDESGKLNMLLSWVQDISDRQKTEAALIKSEA 276

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
           +L +I+E T +G+ II+ + +    N+ ++ + GY  E+I +     F+++    ++ +Y
Sbjct: 277 KLRTIIETTLEGVWIIDSDSMTTFVNQQMANMLGYTQEEITQSSLFKFVDEQDYPIVENY 336

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKN 569
           L         Q          K   +L   +    +   S        + DI+  K+ + 
Sbjct: 337 LQRRREGIAEQ---HEFQFKRKNGDILWTILSTNPIFDDSKYAGCCAIITDINYRKKAEL 393

Query: 570 KLSHAKKIAEKESSHKSDFL 589
            ++ ++K  ++ +S  S F 
Sbjct: 394 AIAVSEKRFQEIASTISQFF 413


>gi|253699608|ref|YP_003020797.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21]
 gi|251774458|gb|ACT17039.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21]
          Length = 916

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 113/640 (17%), Positives = 233/640 (36%), Gaps = 30/640 (4%)

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244
             +           R+ ++ + +       +S   +  +   +    P     +    L 
Sbjct: 43  RQSDDAVRRSEEQLRISQRIARIGSWDLDLASGRLDCSEELCRIFSVPLDEAPDNYDGLL 102

Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
                              +   S   +         +    +     +++S  +   +S
Sbjct: 103 AILPEYGKDALAAAVEEALAGRDSFAVEYSVERPGGKESFLFEVGEVFRDDSGAALRVVS 162

Query: 305 HRNHPSLSAYFDEG---ENLTPETVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDI 360
                S     +     E      ++  P   F+    ++    N SF      +  D  
Sbjct: 163 VVQDVSEQKEAENALFFEQRYRGLIENLPQRIFLKDCNSVYLSCNSSFARDLGVEPTDVF 222

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
                    L AP+L+             D   +AA A +   +  + +   ++      
Sbjct: 223 GK---TDYDLFAPELARKRQDD-------DEKVMAAGAAVERDEQRQRDGAWISKALIPL 272

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
            +         G+  +    +  + +++    +  +I E  + GI  +   G ++  NR 
Sbjct: 273 KDDNGRVYGLLGVLTDITFRKRAEEQLKESEERFRNIFEQAALGICHLALSGALIRINRR 332

Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
              + G+  E++L       +  +  +        +LS ++             +   + 
Sbjct: 333 FCDILGFEQEELLGWSLVQTIHPDDRAAEQRQAARLLSREIDS-YSIEIRQMRHDGTPVW 391

Query: 541 LRII----IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
           + +               +  + D++   +E  +L   + + +  S  KS FLA + HEI
Sbjct: 392 VNLTKSLVCGPKGEPKYLTGVIEDVTA-NREAEELRRERDLVQAASRAKSQFLANMGHEI 450

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTPL A++G S +          + +   Y   I  S   +L+I+ND+LD SK+E+GK+ 
Sbjct: 451 RTPLNAVMGLSRLALKTEL----DSKQRGYLEKIGSSSRTLLNIINDILDFSKMEAGKLE 506

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNA 715
           L    ++L E +     +    A EK I  R   A ++P+ ++ D   + Q+  N+++NA
Sbjct: 507 LEQTELNLYEVLGNISDMHHSKAQEKGIEFRVRLAPDLPKKLVGDPLRLTQVLNNLIANA 566

Query: 716 IHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           + FT  G +++++       E    V   V+DTG+G+   ++ K   PF Q  +S   R 
Sbjct: 567 VKFTEKG-EVVVAIKPLRRGEGEVEVHFCVQDTGIGIAPEQMGKIFTPFTQADSSTTRRY 625

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
            GTGLGL +++ +V+   G+  + S P  G+      PL 
Sbjct: 626 GGTGLGLSISRQLVELMRGELQVESVPGSGSSFSFTVPLA 665



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/232 (11%), Positives = 63/232 (27%), Gaps = 11/232 (4%)

Query: 34  FETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHG 93
           FE  +  +++        S   D +++  +  N L  E  +         R  +  D + 
Sbjct: 144 FEVGEVFRDDSGAALRVVSVVQDVSEQKEAE-NALFFEQRYRGLIENLPQR-IFLKDCNS 201

Query: 94  YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIE 153
                +    + +G     + G    D+             + +        +      +
Sbjct: 202 VYLSCNSSFARDLGVEPTDVFGKTDYDLFAPELARKRQDDDEKVMAAGAAVERDEQRQRD 261

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK- 212
           G      I  A +P+   N    G  G  ++             K  +++F ++ E    
Sbjct: 262 G----AWISKALIPLKDDNGRVYGLLG--VLTDITFRKRAEEQLKESEERFRNIFEQAAL 315

Query: 213 --GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
              H ++      I  +         +  +        H DD    ++    
Sbjct: 316 GICHLALSGALIRINRRFCDILGFEQEELLGWSLVQTIHPDDRAAEQRQAAR 367



 Score = 46.6 bits (109), Expect = 0.017,   Method: Composition-based stats.
 Identities = 10/74 (13%), Positives = 25/74 (33%), Gaps = 2/74 (2%)

Query: 93  GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ--NTWYGKTTLW 150
           G L  I+      +G    +++G  L                  L  +  +++  +    
Sbjct: 324 GALIRINRRFCDILGFEQEELLGWSLVQTIHPDDRAAEQRQAARLLSREIDSYSIEIRQM 383

Query: 151 PIEGTNLYVPIDLA 164
             +GT ++V +  +
Sbjct: 384 RHDGTPVWVNLTKS 397


>gi|193212447|ref|YP_001998400.1| PAS/PAC sensor hybrid histidine kinase [Chlorobaculum parvum NCIB
           8327]
 gi|193085924|gb|ACF11200.1| PAS/PAC sensor hybrid histidine kinase [Chlorobaculum parvum NCIB
           8327]
          Length = 922

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 110/747 (14%), Positives = 249/747 (33%), Gaps = 57/747 (7%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTT 148
           DA+   + +++   + +G  A ++IG    ++              ++LK +        
Sbjct: 57  DANFRYRSVNQAFCRFLGMRADEIIGKNDEELLSPEDAVLCAGQDAEVLKTRQHLEKDRV 116

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
              I G    V   +   P++  + + +      I+ + R  +  +      D+ F+   
Sbjct: 117 ---IAGPKGRVWFRVKKTPVFDASGQVT-----AILCMARDISRRKKAELEFDRLFNLTP 168

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           ++    SS         + Q    +   +   +   +     D  +   +   +   + S
Sbjct: 169 DMVCIASSNGHFTKINKAWQKTLGYSEQELLSTPFLKLIHPDDIKVTWAEIEKILDGQRS 228

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
           L     +   + +    +     L+          +     +     ++   L  +    
Sbjct: 229 LNFVNRYRASDGSYRWFEWNSTPLEE-----GVIYAVTRDITERIEQEKQTRLWADAFRL 283

Query: 329 CPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
           C     +       +   N +F  L   + V +IE    +++L            + VM 
Sbjct: 284 CAHGIAIGLPQTNQVLACNEAFARLCG-RPVSEIEGV-RIASLYVPED------RETVMN 335

Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
                      +    +Q    ++               + M +     +      ++  
Sbjct: 336 NIRTVDRTGFISYQARMQRPDGSAFPAQMDVVSVRGDDGQLMYRVATVQDITGRLKSQSA 395

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP-VEDILRKPFTVFLEQNT 505
           +     +  S++E+  D I I   E      N     LFG    +++L +     +  + 
Sbjct: 396 LRESEERFRSVVESAPDAIFIQTSE-CFSYLNNRALTLFGASTPDELLGRKVLDMIHPDC 454

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP--FSSCYSLTMHDISE 563
             +++  +  +  L       +  L    +   + +                + + DI  
Sbjct: 455 RELVDTRMRRLNELRQSAPAIEERLLRL-DGSTVEVEASAVPFTFSGKPGALVFLRDIRR 513

Query: 564 WKQEKNKLSHAKKIAEKES--SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
            K+ + + +  ++   +             ++H++   LT I+G+SE++  +   P    
Sbjct: 514 RKKAEKERAELEQQLYQSQKIESIGRLAGGIAHDLNNLLTPILGYSEMLLKRIREP---E 570

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
           +  +Y   I  +     ++V  LL  S     + +L F  V L+E + +   L++     
Sbjct: 571 KSKQYVEVIHHAALKSRELVRQLLAFS----SRQSLEFRTVDLNEVIRDFEQLLRRTI-R 625

Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH---------- 731
             I IR         +  D   ++QI +N+  NA    P+GG++I+ ++           
Sbjct: 626 ADIDIRYHLHEQPLPMRGDASQLEQIIMNLAVNAEDAMPAGGELIMESSLLVIKKGEEKY 685

Query: 732 ----TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
                +    +L VRDTG GM    L    +PF         +G+GTGLGL     +V  
Sbjct: 686 FEGLAAGSYALLTVRDTGEGMDQKTLSHLFEPFYTTKP----KGKGTGLGLSTVYGIVRQ 741

Query: 788 NMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           + G   + S   +GT  +I+ P+  + 
Sbjct: 742 HGGIIQVGSERGEGTCFKILLPIQHSD 768



 Score = 93.9 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 32/294 (10%), Positives = 80/294 (27%), Gaps = 28/294 (9%)

Query: 284 TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLF 342
           +++Q   +L+   +E+ +         +        +     ++  P    +        
Sbjct: 9   SREQELLSLRRELEEAKQLNEKLQDELVE-----QRSFMDALLEATPDLLVLKDANFRYR 63

Query: 343 YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT 402
             N +F      ++ + I        LL              +L             L  
Sbjct: 64  SVNQAFCRFLGMRADEIIGKND--EELLSPEDAVLCAGQDAEVLKTRQ--------HLEK 113

Query: 403 IQWNRENSLAMTFIP--FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
            +        + F        +   +      +  +    +  + +          +   
Sbjct: 114 DRVIAGPKGRVWFRVKKTPVFDASGQVTAILCMARDISRRKKAELE-------FDRLFNL 166

Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520
           T D + I +  G     N+A  K  GY  +++L  PF   +  +   V    + +IL   
Sbjct: 167 TPDMVCIASSNGHFTKINKAWQKTLGYSEQELLSTPFLKLIHPDDIKVTWAEIEKILDG- 225

Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA 574
            +++L  +      +            L           DI+E  +++ +    
Sbjct: 226 -QRSLNFVNRYRASDGSYRWFEWNSTPLE-EGVIYAVTRDITERIEQEKQTRLW 277


>gi|158338213|ref|YP_001519390.1| serine/threonine protein kinase and signal transduction histidine
            kinase (STHK) with GAF and PAS/PAC sensor [Acaryochloris
            marina MBIC11017]
 gi|158308454|gb|ABW30071.1| serine/threonine protein kinase and signal transduction histidine
            kinase (STHK) with GAF and PAS/PAC sensor [Acaryochloris
            marina MBIC11017]
          Length = 3309

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 123/779 (15%), Positives = 253/779 (32%), Gaps = 64/779 (8%)

Query: 76   FDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD 135
            F          W I+  G L  ++     T+G    ++  M + D+  +   +  ++  +
Sbjct: 2316 FASENTATSIFW-INRTGSLINVNRSACATLGYPPDELKQMFIWDIDPLFPAEVWSNYWE 2374

Query: 136  LLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA 195
             L        ++     +G+   V I    L       E  G+  F  V           
Sbjct: 2375 QLSLNGYERFESLFQAKDGSTFPVEIMGNYL-----EYEGEGYI-FAEVQDISDRKAAE- 2427

Query: 196  LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255
              K L      +         ++ +    +S  +             L   +     + K
Sbjct: 2428 --KVLQFTQYSVDNAADCIFWIKPDGGFAYSNHAASRMHGYSIDDLMLMSVFDVNPTISK 2485

Query: 256  TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYF----GTLQNNSKESFEYLSHRNHPSL 311
                P   + +       +    N +               +                + 
Sbjct: 2486 AFWSPHWQTIKEQGSVSLESQHQNRDGQLFPVEIVANYLEFEGEEYNFVRVRDISARKAA 2545

Query: 312  SAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
                   +N     ++  P   ++          N  F           +    GL+   
Sbjct: 2546 EQELILKQNHLEALLNNIPQMAWLKDADSQFIAVNEPFAQACGLS----VGEIIGLTDCD 2601

Query: 371  DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
              P+    +  +      +                       +        ++       
Sbjct: 2602 IWPQDMAQSYREDDFKVMASGHRKRVE---EPFSQADGTLGWLETTKTPFQDEQGRMAGT 2658

Query: 431  NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-PV 489
             GI  +  + +  ++++      L  +L+     +   +R  + L  N+A +++ G+   
Sbjct: 2659 VGIAADITERKAAEQELYESKQLLKLVLDTIPQKVCWKDRNSVYLGCNQAFTEMAGFTSS 2718

Query: 490  EDILRKPFTVF-LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            ++I+ +       +             I+S    +      +  T + K   L      L
Sbjct: 2719 DEIVGQTDYELPWKTEEAEFFIECDQRIMSTAKAELGIVEPIL-TADGKNAWLSTNKAPL 2777

Query: 549  PFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEK------------------------ 580
                         + DI+  KQ +  L +  +  E                         
Sbjct: 2778 RDVQGNVMGILAMIEDITPLKQAEETLKNINEELEARVSERTAALEQTNHALAEAKEIAD 2837

Query: 581  -ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639
              +  KS+FLA +SHE+RTPL  I+G+++++         +PR       I + G+ +L 
Sbjct: 2838 SANQAKSEFLANMSHELRTPLNGILGYAQILNRSDQI---SPRDKRGLEVIHQCGSHLLT 2894

Query: 640  IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-IL 698
            ++ND+LD+SKIE+ K+ L+  P  L   +S  + +  L A +K I +     N++P+ + 
Sbjct: 2895 LINDILDLSKIEARKLELNPHPTDLLTLLSSVVDMFHLKATQKGIELLFQLDNDLPKGVE 2954

Query: 699  ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN---EEVILRVRDTGVGMTNYELEK 755
             D +  +Q+ +N++ NA+ FT  G          +N     +   + DTGVG+   +L +
Sbjct: 2955 IDEKRFRQVLINLMGNALKFTEKGSVTFQILQLEANAGQATLRFAIIDTGVGIATEQLSR 3014

Query: 756  AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE--IIFPLYD 812
              K F Q+ + +    EGTGLGL +++ +V    G   + S    G+     +  PL  
Sbjct: 3015 LFKAFEQVGDPRNH-TEGTGLGLAISQRIVQLMGGDIQVSSQLGAGSEFSFCVTVPLAQ 3072



 Score =  162 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 60/521 (11%), Positives = 144/521 (27%), Gaps = 46/521 (8%)

Query: 89   IDAHGYLKEISEELPKTIGNY-AFKMIGMRLCDVSDILHIDPNNHI-------GDLLKRQ 140
            +   G   + ++            +++ ++   +S     D    +        + L++ 
Sbjct: 1696 LGEEG-FIDCNQAAIDLFRYTQKSEIVTLQPYQISPERQADGQLSVDKTAAIMEETLQKG 1754

Query: 141  NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
            ++   +      +G       +++  PI  +           I+             +  
Sbjct: 1755 SS-QFEWLHQRADGETF--WAEVSLTPIQYQGELIVH----SIIRDISDRKAAEISLRES 1807

Query: 201  DKKFSHLHEIKKGHS--------SVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD 252
            + K+ +L     G             +   D  +  S  P     +          H DD
Sbjct: 1808 EAKYRNLLSNLDGAVYRSQYDADWTLEFVSDAIADLSGYPAADFIDNRHRSYASIIHPDD 1867

Query: 253  VLKTEKYPLLTSEES-SLPEQEDFHTINLNQYTKKQYFGTLQNNSKE----SFEYLSHRN 307
            V + ++          S   +      + +     +    + N S +            +
Sbjct: 1868 VERVDRIAAKAVAARQSFSMEYRILHRDGSIRWVTEKGKGIFNESNQFLYFEGVIFDISD 1927

Query: 308  HPSLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGG 365
               +       E     T ++  + F             N  F  L  Y   + +     
Sbjct: 1928 RKQMETALHLSEARAKATFEQAAVGFLEVDISTQQCVRVNDHFCQLIGYSRAELL-GMSV 1986

Query: 366  LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
            +              ++ +      +     +     ++ +           F    Q  
Sbjct: 1987 IEFTHPDDIHESKAMLQQLYA----QEIEDFTLEKRYLRKD-STYFWSETTVFLVDLQDG 2041

Query: 426  ENMPQNGIEPEDVDTRI---NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
            E +   G+  +  + +       + E     L S++E+T D I     +G I S N++ +
Sbjct: 2042 EAVYSVGLVQDISEKKRLEAEHEQAEANSRLLASVVESTDDAIITKTLDGTITSWNQSAT 2101

Query: 483  KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
             LFGY   + + +P  +    +        +  + +          T+   K    + + 
Sbjct: 2102 NLFGYTEAEAMGQPILMLFPPDRYKEEVEIIARLKN--KECIEHFETIRLHKTGHPIDIS 2159

Query: 543  IIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAE 579
            + I  L  S    +     + DI E K  + +L   K   E
Sbjct: 2160 VTISPLIDSQGEVIGASKIVRDIRERKAREQELILTKFALE 2200



 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 55/506 (10%), Positives = 136/506 (26%), Gaps = 38/506 (7%)

Query: 90   DAHGYLKEISEELPKTIGNYAFKMIG---MRLCDVSDILHIDPNNHIGD-LLKRQNTWYG 145
            DA   L+ +S+ +    G  A   I         +     ++  + I    +  + ++  
Sbjct: 1828 DADWTLEFVSDAIADLSGYPAADFIDNRHRSYASIIHPDDVERVDRIAAKAVAARQSFSM 1887

Query: 146  KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
            +  +   +G+     +      I++ + +F  F G  ++                + +  
Sbjct: 1888 EYRILHRDGSIR--WVTEKGKGIFNESNQFLYFEG--VIFDISDRKQMETALHLSEARAK 1943

Query: 206  HLHEIKK-----------GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD--D 252
               E                  V      +              + +   + +  K    
Sbjct: 1944 ATFEQAAVGFLEVDISTQQCVRVNDHFCQLIGYSRAELLGMSVIEFTHPDDIHESKAMLQ 2003

Query: 253  VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
             L  ++    T E+  L +   +       +      G    +     +    +   +  
Sbjct: 2004 QLYAQEIEDFTLEKRYLRKDSTYFWSETTVFLVDLQDGEAVYSVGLVQDISEKKRLEAEH 2063

Query: 313  AYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
               +    L    V+            G +   N S   L  Y   + +     +  L  
Sbjct: 2064 EQAEANSRLLASVVESTDDAIITKTLDGTITSWNQSATNLFGYTEAEAMGQP--ILMLFP 2121

Query: 372  APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
                        ++    ++ CI        +         ++       +   E +  +
Sbjct: 2122 PD---RYKEEVEIIARLKNKECIE-HFETIRLHKTGHPI-DISVTISPLIDSQGEVIGAS 2176

Query: 432  GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
             I  +  + +  ++++ +        LE T  GI  IN +G  +S N +     GY  ++
Sbjct: 2177 KIVRDIRERKAREQELILTKF----ALENTEIGIFWINSDGQFISVNESACIRLGYDPDE 2232

Query: 492  ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI--IIKKLP 549
            +                   + TEI      +          K++ +  + I     +  
Sbjct: 2233 LCNLYVWDITPGFFAEDWLEHWTEISKKGYSR---FEVFHQAKDKTIFPVEIMSNYIEYQ 2289

Query: 550  FSSCYSLTMHDISEWKQEKNKLSHAK 575
                    + DISE K  + +    +
Sbjct: 2290 GIGYLFAQVQDISERKAAEKERILTQ 2315



 Score =  112 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 50/508 (9%), Positives = 135/508 (26%), Gaps = 44/508 (8%)

Query: 86   TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
             + I++ G    ++E     +G    ++  + + D++     +        + ++     
Sbjct: 2206 IFWINSDGQFISVNESACIRLGYDPDELCNLYVWDITPGFFAEDWLEHWTEISKKGYSRF 2265

Query: 146  KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
            +      + T   V I    +          G+  F  V             + L +  S
Sbjct: 2266 EVFHQAKDKTIFPVEIMSNYIEYQG-----IGYL-FAQVQDISERKAAE-KERILTQFAS 2318

Query: 206  HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
                      +      ++                                  Y    S 
Sbjct: 2319 ENTATSIFWINRTGSLINVNRSACATLGYPPDELKQMFIWDIDPLFPAEVWSNYWEQLSL 2378

Query: 266  ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
                  +  F   + + +  +     L+   +      +     S     ++    T  +
Sbjct: 2379 NGYERFESLFQAKDGSTFPVEIMGNYLEYEGEGYI--FAEVQDISDRKAAEKVLQFTQYS 2436

Query: 326  VDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVD-----DIEIAGGLSTLLDAPKLSDNN 379
            VD       ++   G   Y+N +   +  Y   D       ++   +S    +P      
Sbjct: 2437 VDNAADCIFWIKPDGGFAYSNHAASRMHGYSIDDLMLMSVFDVNPTISKAFWSPHWQTIK 2496

Query: 380  AIKPVML----YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
                V L       D          + +++  E    +                      
Sbjct: 2497 EQGSVSLESQHQNRDGQLFPVEIVANYLEFEGEEYNFVRVR------------------- 2537

Query: 436  EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
            +    +  ++++ ++   L ++L        + + +   ++ N   ++  G  V +I+  
Sbjct: 2538 DISARKAAEQELILKQNHLEALLNNIPQMAWLKDADSQFIAVNEPFAQACGLSVGEIIGL 2597

Query: 496  PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY- 554
                   Q+          ++++   R+ +E+    S  +  L  L              
Sbjct: 2598 TDCDIWPQDMAQSYREDDFKVMASGHRKRVEEPF--SQADGTLGWLETTKTPFQDEQGRM 2655

Query: 555  ---SLTMHDISEWKQEKNKLSHAKKIAE 579
                    DI+E K  + +L  +K++ +
Sbjct: 2656 AGTVGIAADITERKAAEQELYESKQLLK 2683



 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 44/420 (10%), Positives = 107/420 (25%), Gaps = 23/420 (5%)

Query: 48   SFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIG 107
             +E   +     + +S+    +    F    +       + I   G     +    +  G
Sbjct: 2406 EYEGEGYIFAEVQDISDRKAAEKVLQFTQYSVDNAADCIFWIKPDGGFAYSNHAASRMHG 2465

Query: 108  NYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALP 167
                 ++ M + DV+  +     +     +K Q +   ++     +G    V I    L 
Sbjct: 2466 YSIDDLMLMSVFDVNPTISKAFWSPHWQTIKEQGSVSLESQHQNRDGQLFPVEIVANYL- 2524

Query: 168  IYSRNREFSGFR-GFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFS 226
                  EF G    F  V                      L       + ++       +
Sbjct: 2525 ------EFEGEEYNFVRVRDISARKAAEQELILKQNHLEALLNNIPQMAWLKDADSQFIA 2578

Query: 227  QQSPPPHL--RMKNKVSSLTEYYAHKDDVLKTEKYPLL---TSEESSLPEQEDFHTINLN 281
               P          ++  LT+      D+ ++ +        S       +E F   +  
Sbjct: 2579 VNEPFAQACGLSVGEIIGLTDCDIWPQDMAQSYREDDFKVMASGHRKR-VEEPFSQADGT 2637

Query: 282  QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE----NLTPETVDKCPIPF-FVY 336
                +      Q+        +      +     ++       L    +D  P    +  
Sbjct: 2638 LGWLETTKTPFQDEQGRMAGTVGIAADITERKAAEQELYESKQLLKLVLDTIPQKVCWKD 2697

Query: 337  SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA 396
             +      N +F  +  + S D+I          + P  ++          R   T  A 
Sbjct: 2698 RNSVYLGCNQAFTEMAGFTSSDEIVGQTD----YELPWKTEEAEFFIECDQRIMSTAKAE 2753

Query: 397  SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
               +  I      +  ++       +     M    +  +    +  +  ++    +L +
Sbjct: 2754 LGIVEPILTADGKNAWLSTNKAPLRDVQGNVMGILAMIEDITPLKQAEETLKNINEELEA 2813



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 37/328 (11%), Positives = 94/328 (28%), Gaps = 43/328 (13%)

Query: 280  LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG 339
              +   +      Q   ++  + L  R      A     E       ++      +    
Sbjct: 1641 GERAAAELERQQAQEALEQLNQELEARVRDRT-AQLAASEQRLQTLFNQAADAVLLLGEE 1699

Query: 340  NLFYANPSFLLLTKYKSVDDI-----------EIAGGL-----STLLDAPKLSDNNAIKP 383
                 N + + L +Y    +I             A G      +  +    L   ++   
Sbjct: 1700 GFIDCNQAAIDLFRYTQKSEIVTLQPYQISPERQADGQLSVDKTAAIMEETLQKGSSQFE 1759

Query: 384  VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
             +  R+D     A   L  IQ+  E  +                     I  +  D +  
Sbjct: 1760 WLHQRADGETFWAEVSLTPIQYQGELIVH-------------------SIIRDISDRKAA 1800

Query: 444  KRKMEIEVMQLCSILEATSDGIAI--INREGIILSTNRAVSKLFGYPVEDI---LRKPFT 498
            +  +     +  ++L      +     + +  +   + A++ L GYP  D      + + 
Sbjct: 1801 EISLRESEAKYRNLLSNLDGAVYRSQYDADWTLEFVSDAIADLSGYPAADFIDNRHRSYA 1860

Query: 499  VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSL 556
              +  +    ++    + ++     ++E   L      + ++ +        +    +  
Sbjct: 1861 SIIHPDDVERVDRIAAKAVAARQSFSMEYRILHRDGSIRWVTEKGKGIFNESNQFLYFEG 1920

Query: 557  TMHDISEWKQEKNKLSHAKKIAEKESSH 584
             + DIS+ KQ +  L  ++  A+     
Sbjct: 1921 VIFDISDRKQMETALHLSEARAKATFEQ 1948



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/230 (11%), Positives = 66/230 (28%), Gaps = 15/230 (6%)

Query: 364  GGLSTLLDAPKLSDNNAIKPVMLYRSD--RTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
            G        P L +      +     D     I     L            M    F + 
Sbjct: 1584 GVQEAFPLDPDLVEMGVDSYLGTALKDRSGQVIGVICILDYETIENIEFARMVLQVFGER 1643

Query: 422  NQFPENMPQNGIEPEDVDTRINKR------KMEIEVMQLCSILEATSDGIAIINREGIIL 475
                    Q     E ++  +  R      ++     +L ++    +D + ++  EG  +
Sbjct: 1644 AAAELERQQAQEALEQLNQELEARVRDRTAQLAASEQRLQTLFNQAADAVLLLGEEG-FI 1702

Query: 476  STNRAVSKLFGYPVED----ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
              N+A   LF Y  +     +     +   + +    ++     +     + + +   L 
Sbjct: 1703 DCNQAAIDLFRYTQKSEIVTLQPYQISPERQADGQLSVDKTAAIMEETLQKGSSQFEWLH 1762

Query: 532  STKEEKLLSLRIIIKKLPFSSCYSL--TMHDISEWKQEKNKLSHAKKIAE 579
               + +     + +  + +     +   + DIS+ K  +  L  ++    
Sbjct: 1763 QRADGETFWAEVSLTPIQYQGELIVHSIIRDISDRKAAEISLRESEAKYR 1812


>gi|34498098|ref|NP_902313.1| sensor/response regulator hybrid [Chromobacterium violaceum ATCC
            12472]
 gi|34103953|gb|AAQ60313.1| probable sensor/response regulator hybrid [Chromobacterium violaceum
            ATCC 12472]
          Length = 1436

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 130/763 (17%), Positives = 258/763 (33%), Gaps = 52/763 (6%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            +D  G L+E S  L + +G     ++GM + DV     +   + +   L           
Sbjct: 304  LDGRGSLQEASHGLCRLLGRGRADLLGMNVADVCAPEDL---SRLNAALACGGRMQRLRL 360

Query: 149  LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               ++G    V  +L   P   +     G                         +   L 
Sbjct: 361  RL-MDGDGRAVDCELVLTP---QEESMDGAAWLLQAEDLGPRQSSSRKAAGAQAQLEALA 416

Query: 209  EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA----HKDDVLKTEK-YPLLT 263
                                +    L        +         H D+    +K +    
Sbjct: 417  GAFDVGRWEWDASAQSLRWDARMRALHGVGSEEKVDWPRWRGCVHPDEQAVWDKFWAEEL 476

Query: 264  SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
             + +                  + +    ++ S  +                        
Sbjct: 477  GDVAEAGWDCRIVDGEGRLRWFRLFARVERDESGRALRADGLCWDAGNLQEGQAELRRVR 536

Query: 324  E----TVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
            E     +D  P     +       +AN ++L     +  D          L         
Sbjct: 537  EELQTVLDAMPAMVSYWDGNLHNVFANRAYLDWMGLEMADVRGR-----HLRHVIGDERY 591

Query: 379  NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
             A +P +    +   +A+ A    I  + +    +         Q            +  
Sbjct: 592  RANQPYIQGALNG--VASLAERCIIDLSGQERHLLAHYVPHW--QQERVQGFYVFVTDIT 647

Query: 439  DTRINKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILR--K 495
              +  +R+ +    +L  I+++ SD  I   +  G I   +    ++ GY  ++++    
Sbjct: 648  LLKQAQRERQEVQARLQGIIDSASDFAIIATDLRGEISIFSAGAERMLGYRADEMVGLAS 707

Query: 496  PFTVFLEQNTPSVMNHYLTEI-----------LSLDLRQTLEKITLGSTKEEKLLSLRII 544
            P  + L +           E+                  ++ +      K+ + + + ++
Sbjct: 708  PMILHLPEEVARRERELSEELGRPVSGFDVFVEKTRGGGSITQEWTYLHKDGRRIPVSLV 767

Query: 545  IKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
               +        +     D+   K+    L  AK+ AE+ S  KS+F+A +SHEIRTP+ 
Sbjct: 768  TTGIWQDGWLYGFVCIAKDVRAEKEATRMLESAKEEAERASRAKSEFVANMSHEIRTPMN 827

Query: 602  AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
             ++G  E++ N R   +       Y + +  S   ++ I+ND+LD SK+E+GK+      
Sbjct: 828  GVLGMLELLSNTRLDGV----QRSYLDMLQLSCRSLMSILNDILDFSKLEAGKLEAARAR 883

Query: 662  VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTP 720
              LDE +    +++ ++A  KR+ +  +    +P  ++ D   ++Q+ +N+  NAI FT 
Sbjct: 884  YDLDEVLGALAAMMSMHAARKRLELVIAVDPAVPAALVGDALRLQQVLVNLAGNAIKFTA 943

Query: 721  SGGQIIISTTHTSNE---EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
             G ++ +S      +    ++  VRDTGVGM    L     PF Q  +S   R  GTGLG
Sbjct: 944  EG-EVAVSVGREKRDGRDWLLFAVRDTGVGMEAPLLRTIFDPFIQADSSNTRRFGGTGLG 1002

Query: 778  LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820
            L +++ +V+   G+  + S P +G+      PL         +
Sbjct: 1003 LTISRRLVELMGGEIGVESRPGEGSRFWFALPLEPADKEPPAV 1045



 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 53/545 (9%), Positives = 143/545 (26%), Gaps = 49/545 (8%)

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
           W      W   G    +   L+A  +              ++    +            +
Sbjct: 190 WGVLMARWRPLGVADLLLPALSACLLLDATGALLFLPLMAVLACETLIRLFPEAMPAPLR 249

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSP-------PPHLRMKNKVSSLTEYYAHKDDV-- 253
           +   L    +    +         +Q+            R+   +  +    A  D    
Sbjct: 250 QPEPLALSVQLLFWLAAALLPHAIRQAARGDAERGLGRRRLMQALDGMEAGCALLDGRGS 309

Query: 254 -----------LKTEKYPLLTSEESSLPEQEDFHTINLN-------------------QY 283
                      L   +  LL    + +   ED   +N                     + 
Sbjct: 310 LQEASHGLCRLLGRGRADLLGMNVADVCAPEDLSRLNAALACGGRMQRLRLRLMDGDGRA 369

Query: 284 TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY 343
              +   T Q  S +   +L                      ++     F     G    
Sbjct: 370 VDCELVLTPQEESMDGAAWLLQAEDLGPRQSSSRKAAGAQAQLEALAGAF---DVGRWE- 425

Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK---LSDNNAIKPVMLYRSDRTCIAASARL 400
            + S   L     +  +   G    +        +  +        +  +   +A +   
Sbjct: 426 WDASAQSLRWDARMRALHGVGSEEKVDWPRWRGCVHPDEQAVWDKFWAEELGDVAEAGWD 485

Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
             I                + ++    +  +G+  +  + +  + ++     +L ++L+A
Sbjct: 486 CRIVDGEGRLRWFRLFARVERDESGRALRADGLCWDAGNLQEGQAELRRVREELQTVLDA 545

Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520
               ++  +     +  NRA     G  + D+  +     +          Y+   L   
Sbjct: 546 MPAMVSYWDGNLHNVFANRAYLDWMGLEMADVRGRHLRHVIGDERYRANQPYIQGAL-NG 604

Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIK-KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579
           +    E+  +  + +E+ L    +   +      + + + DI+  KQ + +    +   +
Sbjct: 605 VASLAERCIIDLSGQERHLLAHYVPHWQQERVQGFYVFVTDITLLKQAQRERQEVQARLQ 664

Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639
                 SDF A ++ ++R  ++     +E +   R   +         +  +       +
Sbjct: 665 GIIDSASDF-AIIATDLRGEISIFSAGAERMLGYRADEMVGLASPMILHLPEEVARRERE 723

Query: 640 IVNDL 644
           +  +L
Sbjct: 724 LSEEL 728


>gi|257059244|ref|YP_003137132.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 8802]
 gi|256589410|gb|ACV00297.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 8802]
          Length = 1611

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 133/763 (17%), Positives = 269/763 (35%), Gaps = 52/763 (6%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGM-RLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
            +D++G    I++     +G    ++IG  +L D+         +   +LLK+  +     
Sbjct: 632  LDSNGVFIHINDTELTWLGYTREQVIGKVKLLDLLIPKSRKTFSQHFELLKQGYSINSLE 691

Query: 148  TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                       + I L   PI      F   R    +       +     ++   + + L
Sbjct: 692  LSMLRSNGT-VMSIMLNVNPIQDTEGNFIMSR--ATLFDISERKEAEKTLQKYADEITDL 748

Query: 208  HEIKKGHSSVEKEKYDIFSQQSPPP---HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
            +                    +          +  +  L           +  +      
Sbjct: 749  YNNAPCGYHSLDSNGVFVQINNTELKWLGYTREQVIGKLKFSDIITPKSCQIFQQNFEEF 808

Query: 265  EESSLPEQEDFHT--INLNQYTKKQYFGTLQNNSK-----------ESFEYLSHRNHPSL 311
            ++S   +  +F     +   +        +++               + +  + R    +
Sbjct: 809  KQSGWVKGLEFQMVCADGKIFPVILNATAIKDADGKFIMSRSTIFDITEQQAALRERKQI 868

Query: 312  SAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
                 +   L    +D            G +   N +      Y +++ I        ++
Sbjct: 869  EQELQKTTTLQKAILDSANYTIISTTEDGTIVTFNAAAEKWLGYSAIEVIGKT--TPAII 926

Query: 371  DAPK------------LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
              P+            L         +     R           I+ +      +     
Sbjct: 927  HDPEEVVQKAQELSLELGRVIEPGFEVFVAKARLGEPDEGEWSYIRKDGSRFPVL-LSVT 985

Query: 419  EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
               N   +     GI  +    +  +R +     +L   LEA+ DG+   N E   +  +
Sbjct: 986  ALRNSQGQITGFLGIGSDITQRKQAERALRDSEERLQLALEASGDGLWDWNIETGEVYFS 1045

Query: 479  RAVSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
               +++ GY V ++      +   +       +   L   L        +      TK  
Sbjct: 1046 PRYAEMLGYRVNELPPNVTTWERLVYPKDMIWVKEILDSHLKDSTTS-YDFDYRVRTKSG 1104

Query: 537  KLLSLRI---IIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
            +   +     ++ +           T  DI++ K  + +L  AK+ A   +  KS FLA 
Sbjct: 1105 QWKWIADYGKVVARDGEGKPLRMLGTHKDITQRKHIELELQKAKETAIAANLSKSIFLAN 1164

Query: 592  VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
            +SHE+RTPL AI+GF++++         +  + E    I+RSG  +L +++D+LD+SKIE
Sbjct: 1165 MSHELRTPLNAILGFTQLLGRD---TSLSAYHQERLQIINRSGEHLLGLIDDILDLSKIE 1221

Query: 652  SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALN 710
            +G++ L      L   +     ++   A  K I +     +N+PR I  D + ++QI +N
Sbjct: 1222 TGQIALFLTDCDLSGLLLTVEEMLSPKAESKGIKLIIEKDDNLPRYIKIDSKKLRQILIN 1281

Query: 711  ILSNAIHFTPSGG-QIIISTTHTSNEEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
            +L+NAI FT  G   + ++ +    + VI    V DTGVG+   EL+   + F Q    +
Sbjct: 1282 LLNNAIKFTHQGTVTLRVNLSKIDQKAVIVKFIVEDTGVGIAADELDNLFQLFVQAEAGK 1341

Query: 768  QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            +I  +G+GLGL +++ +V    GK  + S   +G++     P+
Sbjct: 1342 KIN-QGSGLGLAISQKLVQLMGGKIEVNSILNQGSIFSFEIPV 1383



 Score = 97.0 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 55/575 (9%), Positives = 162/575 (28%), Gaps = 73/575 (12%)

Query: 63  SNTNYLDSENTFVFDPIPRTVRF-TWNIDAHGYLKEISEELPKTIGNY--AFKMIGMRLC 119
           ++TN    +  + F          TW  +       +S +    +G     F+       
Sbjct: 316 TSTNTALKQTQYQFQQAIEATNLGTWQWNLLSNNVILSPQTETLLGLQNCRFEGTNEAFF 375

Query: 120 DVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFR 179
           D+      +P      L+          + W ++       + L    +Y  + +    +
Sbjct: 376 DLLSRDDREP------LINSLQVSILNASEWQLDHQINDRWVSLMGKCLYDESGQ--AIQ 427

Query: 180 GFGIVHVNRVDNDPRALGK----RLD-KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL 234
             GI+       +     K    RL+ +      E+++ +  +++E       +      
Sbjct: 428 MIGIIKDITHRKETELKLKKFNERLENRVNQRTAELREANHQLQEELLKRHQIEEALQQK 487

Query: 235 RMKNKVSSLTEYYAHKDDVLKTEKYPL--------------------------------- 261
             + +        A            +                                 
Sbjct: 488 SAEFEAIFQAIPDAIIFADKTRHIQKVNSAFTYLFGYLPDEVYGQTTEMLYVSSEEYYEQ 547

Query: 262 ------LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
                 LT++E + P +  +   +   +  +    ++++N +    ++      S     
Sbjct: 548 DRKRFNLTAKEQNKPYEIRYRRKDSTIFFTETVGSSVKDNQENVIGFVGIVRDISERKEA 607

Query: 316 DEGENLTPE----TVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
            E      +      +  P  +  + S+G   + N + L    Y     I     L  L+
Sbjct: 608 QETLKKYADEITDLYNNAPCGYHSLDSNGVFIHINDTELTWLGYTREQVIGKVKLLDLLI 667

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
                   +       +   +   + ++   ++  +    +++        +     +  
Sbjct: 668 ------PKSRKTFSQHFELLKQGYSINSLELSMLRSNGTVMSIMLNVNPIQDTEGNFIMS 721

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490
                +  + +  ++ ++    ++  +      G   ++  G+ +  N    K  GY  E
Sbjct: 722 RATLFDISERKEAEKTLQKYADEITDLYNNAPCGYHSLDSNGVFVQINNTELKWLGYTRE 781

Query: 491 DILRK-PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
            ++ K  F+  +   +  +      E       + LE   +    + K+  + +    + 
Sbjct: 782 QVIGKLKFSDIITPKSCQIFQQNFEEFKQSGWVKGLEFQMVC--ADGKIFPVILNATAIK 839

Query: 550 FSSCYSLTMH----DISEWKQEKNKLSHAKKIAEK 580
            +    +       DI+E +    +    ++  +K
Sbjct: 840 DADGKFIMSRSTIFDITEQQAALRERKQIEQELQK 874



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/166 (14%), Positives = 51/166 (30%), Gaps = 13/166 (7%)

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
           + D       ++    Q    +EAT+ G    N     +  +     L G          
Sbjct: 312 ERDRTSTNTALKQTQYQFQQAIEATNLGTWQWNLLSNNVILSPQTETLLGLQNCRFEGTN 371

Query: 497 --FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC- 553
             F   L ++    + + L   +       L+              + ++ K L   S  
Sbjct: 372 EAFFDLLSRDDREPLINSLQVSILNASEWQLDHQINDR-------WVSLMGKCLYDESGQ 424

Query: 554 ---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
                  + DI+  K+ + KL    +  E   + ++  L   +H++
Sbjct: 425 AIQMIGIIKDITHRKETELKLKKFNERLENRVNQRTAELREANHQL 470


>gi|298528781|ref|ZP_07016185.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
            thiodismutans ASO3-1]
 gi|298512433|gb|EFI36335.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
            thiodismutans ASO3-1]
          Length = 1625

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 118/741 (15%), Positives = 254/741 (34%), Gaps = 53/741 (7%)

Query: 96   KEISEELPKTIGNYAFKMIGM--RLCDVSDILHIDPNNHIGDLLKR----QNTWYGKTTL 149
               S      +G  + ++ G      D+      +        L       +++  +  +
Sbjct: 430  VYFSPGYVSMLGYDSAEVPGHVQTWLDLIHPE--EKEKAYQANLDCINNLVDSFAVEYRM 487

Query: 150  WPIEGTNLYVPIDLAALPI-YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                G   +V I      +      +    R  G               +  +  +  + 
Sbjct: 488  QARNGN--WVWILGRGSAVKRDETGK--ALRMIGTHTDITRRKLAEESLREQEFFYRSIL 543

Query: 209  EIKKGHSSVEKEKYDIFS--QQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
            E       +   + D+      +     R + ++  +          L      L+  E+
Sbjct: 544  ESINDAVFLTDAQGDLTFVCPNAHVIFGRSRQELLEMANIEHVLGSRLIKSG-ELVEDEQ 602

Query: 267  SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL----SHRNHPSLSAYFDEGENLT 322
                 +        +          L     E   YL               F +     
Sbjct: 603  EISNRECAIKDSRGHWRYLLVNIKRLPEQLHEKGLYLYCCRDVTEKKKTEDTFRQTLERY 662

Query: 323  PETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
               V+       +      L +AN S  L+  Y      +      ++ D     D +  
Sbjct: 663  RLIVENANEGIRILDRQARLSFANRSMALMLGYSPEKVTDH-----SIWDFIHPEDQDKF 717

Query: 382  KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
              +   R          RL  I  N      +        ++  E      +  +  + +
Sbjct: 718  NRIWENRKSGKAEKYELRL--IHRNGSTVWTLVSSTPLFKDK--EFNGSFALVADITEKK 773

Query: 442  INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP-------VEDILR 494
              + ++  +   L S+ E    G    + +   ++  R    +  +          +++ 
Sbjct: 774  HLEEELRKQQEILTSMEEMARVGGWEWDIDARTMTWTRGAYLIHDFEVNHNPTLSSELIS 833

Query: 495  KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554
            K    + +    S +++         +    ++     +   + L +R     +  S   
Sbjct: 834  KSLECYYK-EDRSRVSNAFQACAEKGVA--YDQEFPFVSARGRRLWVRTAAWPVYDSGRI 890

Query: 555  SLT---MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
                  + DI+E KQ +  L  A+  A++ +  KS+FLA +SHEIRTP+  +IG ++++ 
Sbjct: 891  VRVAGHIMDITELKQSQLDLQEARDKAQEATRAKSEFLANMSHEIRTPMNGVIGMTDLLM 950

Query: 612  NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
            +    P         A  I  SG  +L ++ND+LD SKIE+G++ L     +L   + + 
Sbjct: 951  DTELRP----EQRSLAESIQSSGEALLALINDILDFSKIEAGRLELESVDFNLRYLLEDL 1006

Query: 672  ISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
             SL+ + A+EK + +      ++P ++  D   ++QI  N++ NAI FT  G ++++   
Sbjct: 1007 ASLMAVRADEKGLELICLPDPDVPAQVQGDPGRLRQILTNLVGNAIKFTHQG-EVVVRVQ 1065

Query: 731  HT----SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
             +     +  ++  V+DTG+G+   +++     F Q+  S   +  GTGLGL +++ + +
Sbjct: 1066 RSEVSADDVLLLFTVQDTGIGIPEDKIDLLFNKFSQVDASTTRKFGGTGLGLAISRQLAE 1125

Query: 787  ANMGKFYIFSTPAKGTLIEII 807
               G+  + S   +G      
Sbjct: 1126 MMGGEVGVQSEYGRGCKFWFT 1146



 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 49/559 (8%), Positives = 138/559 (24%), Gaps = 63/559 (11%)

Query: 56  DQNQESVSNTNYLDSENTFVFDPIPR--TVRFTWNIDAHGYLKEISEELPKTIGNYAFKM 113
                S   +  L     F+             +     G L  ++  L +  G  + + 
Sbjct: 2   TTKNSSFPPSQNLPGGTGFMDCRDLLENAPTGIFTSTPEGKLIYVNSALARMFGYDSPQD 61

Query: 114 IGMRLCDVSDILHIDPNNH---IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYS 170
           +   + D++  L+ +P +    +  L  ++     +  +   +GT     +   A  +  
Sbjct: 62  MVESVTDIASQLYANPADRAAFLRHLEDKKELVNHEYRMRRRDGT--EFWVSRNARAVLD 119

Query: 171 RNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP 230
            +      +GF            +      ++K   L E        +  +  I S    
Sbjct: 120 EDGRLVACQGF--TTDITERKQVQEALGASEEKHRLLFETMAQGVVYQDAEGVIISVNPA 177

Query: 231 PPHL--RMKNKVSSLTEYYAHK----------DDVLKTEKYPLLTSEESSLPEQEDFHTI 278
              +      ++   +                          L + + +    +  +H +
Sbjct: 178 AERILGLTSEQIVRRSSMDPQWKMIQEDGSEVPGSQHPAMTALKSGKTTGPVTRGVYHPV 237

Query: 279 NLNQYTKKQYFGTLQNNSKE-----SFEYLSHRNHPSLSAYFDEGENLTPETVD-KCPIP 332
           + +          + +            +              + E +     +    + 
Sbjct: 238 SNDHIWLSITAVPMFHPGDSKPCQVYTTFEDITRLKEQHDELRKREQMFTNLFEKHAAVK 297

Query: 333 FFVY-SHGNLFYANPSFLLLTKYKSVDD----IEIAGGLSTLLDAPKLSDNNAIK----P 383
             V    G +  AN +      +   +     I+    LS      +L    +       
Sbjct: 298 LMVDPDTGAIIDANHAAAEFYGWSREELKKKYIQEINTLSPDELHKELERARSRDKFWFE 357

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
                +D +          I+ +    L                     I  +  D +  
Sbjct: 358 FQHRLADGSIRDVEVFSSKIESHGRQVLY-------------------SIIQDITDRKKA 398

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR--KPFTVFL 501
           ++++     +    +EAT DG+   +     +  +     + GY   ++    + +   +
Sbjct: 399 EKELLESRERFSLAMEATKDGLWDWDVSTGEVYFSPGYVSMLGYDSAEVPGHVQTWLDLI 458

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-----CYSL 556
                        + ++  +            +    + +      +             
Sbjct: 459 HPEEKEKAYQANLDCINNLVDS-FAVEYRMQARNGNWVWILGRGSAVKRDETGKALRMIG 517

Query: 557 TMHDISEWKQEKNKLSHAK 575
           T  DI+  K  +  L   +
Sbjct: 518 THTDITRRKLAEESLREQE 536



 Score =  117 bits (292), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 38/270 (14%), Positives = 90/270 (33%), Gaps = 23/270 (8%)

Query: 323 PETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIA--GGLSTLLDAPKLSDNN 379
            + ++  P   F     G L Y N +   +  Y S  D+  +     S L   P      
Sbjct: 24  RDLLENAPTGIFTSTPEGKLIYVNSALARMFGYDSPQDMVESVTDIASQLYANP------ 77

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
           A +   L   +      +   + ++        ++       ++    +   G   +  +
Sbjct: 78  ADRAAFLRHLEDKKELVN-HEYRMRRRDGTEFWVSRNARAVLDEDGRLVACQGFTTDITE 136

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP--- 496
            +  +  +     +   + E  + G+   + EG+I+S N A  ++ G   E I+R+    
Sbjct: 137 RKQVQEALGASEEKHRLLFETMAQGVVYQDAEGVIISVNPAAERILGLTSEQIVRRSSMD 196

Query: 497 FTVFLEQNTPSVM----NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
               + Q   S +    +  +T + S      + +        +  + L I    +    
Sbjct: 197 PQWKMIQEDGSEVPGSQHPAMTALKSGKTTGPVTRGVYHPVSNDH-IWLSITAVPMFHPG 255

Query: 553 C-----YSLTMHDISEWKQEKNKLSHAKKI 577
                    T  DI+  K++ ++L   +++
Sbjct: 256 DSKPCQVYTTFEDITRLKEQHDELRKREQM 285



 Score = 78.1 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 26/246 (10%), Positives = 69/246 (28%), Gaps = 16/246 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D    L   +  +   +G    K+    + D       D  N I +  K       +  
Sbjct: 676 LDRQARLSFANRSMALMLGYSPEKVTDHSIWDFIHPEDQDKFNRIWENRKSGKAEKYELR 735

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           L    G+   V   +++ P++ +++EF+G   F +V             ++  +  + + 
Sbjct: 736 LIHRNGST--VWTLVSSTPLF-KDKEFNG--SFALVADITEKKHLEEELRKQQEILTSME 790

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLR----------MKNKVSSLTEYYAHKDDVLKTEK 258
           E+ +             +       +               +S   E Y  +D    +  
Sbjct: 791 EMARVGGWEWDIDARTMTWTRGAYLIHDFEVNHNPTLSSELISKSLECYYKEDRSRVSNA 850

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
           +     +  +  ++  F +    +   +     + + S        H    +        
Sbjct: 851 FQACAEKGVAYDQEFPFVSARGRRLWVRTAAWPVYD-SGRIVRVAGHIMDITELKQSQLD 909

Query: 319 ENLTPE 324
                +
Sbjct: 910 LQEARD 915



 Score = 38.1 bits (87), Expect = 6.4,   Method: Composition-based stats.
 Identities = 28/378 (7%), Positives = 92/378 (24%), Gaps = 21/378 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            +  DA G L  +        G    +++ M   +      +  +  + +    Q     
Sbjct: 550 VFLTDAQGDLTFVCPNAHVIFGRSRQELLEMANIEHVLGSRLIKSGELVE--DEQEISNR 607

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +  +    G   Y+ +++  LP     +    +                   ++  +++ 
Sbjct: 608 ECAIKDSRGHWRYLLVNIKRLPEQLHEKGLYLYC----CRDVTEKKKTEDTFRQTLERYR 663

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSS-LTEYYAHKDDVLKTEKYPLL 262
            + E       +   +  +                KV+      + H +D  K  +    
Sbjct: 664 LIVENANEGIRILDRQARLSFANRSMALMLGYSPEKVTDHSIWDFIHPEDQDKFNRIWEN 723

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
                +   +      N +          L  + KE     +     +   + +E     
Sbjct: 724 RKSGKAEKYELRLIHRNGSTVWTLVSSTPLFKD-KEFNGSFALVADITEKKHLEEELRKQ 782

Query: 323 PETV----DKCPIPFFVYSHG-NLFYANPSFLLLTKYK--SVDDIEIAGGLSTLLDAPKL 375
            E +    +   +  + +              L+  ++      +       +L    K 
Sbjct: 783 QEILTSMEEMARVGGWEWDIDARTMTWTRGAYLIHDFEVNHNPTLSSELISKSLECYYKE 842

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
             +                       + +      L +    +   +     +   G   
Sbjct: 843 DRSRVSNAFQACAEKGVAYDQEFPFVSAR---GRRLWVRTAAWPVYDS-GRIVRVAGHIM 898

Query: 436 EDVDTRINKRKMEIEVMQ 453
           +  + + ++  ++    +
Sbjct: 899 DITELKQSQLDLQEARDK 916


>gi|186684333|ref|YP_001867529.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC
           73102]
 gi|186466785|gb|ACC82586.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC
           73102]
          Length = 1105

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 112/760 (14%), Positives = 266/760 (35%), Gaps = 51/760 (6%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMR---LCDVSDILHIDPNNHIGDLL---KRQNTWYG 145
                 +++E+ +  G    ++  M       +     +       +             
Sbjct: 217 EQRNSYVNDEIAQGWGYTPAEIQAMGKDLFTQLLHPEDLARLPTYFERFNSAHPGEVLSF 276

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF--GIVHVNRVDNDPRALGKRLDKK 203
           +  +  + G   +     +   ++  +R   GF  +  GI              ++ +++
Sbjct: 277 EYRIRHVNGEWRWF---CSYDTVH--SRTVEGFPKYLLGIAFDITERRHIEISLRQSNER 331

Query: 204 FSHLHEIKKGHSSVEK------EKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257
           F              +      E+    +Q         +       +     D      
Sbjct: 332 FELAAAAVNCLIYDWEIHRSSVERTQGLTQVLGYTQQEAEPTFEWWQQLIHPDDQQRVNN 391

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
           ++    +  +    +      +      +     +++ + +    +      +       
Sbjct: 392 QFMASMANGNRYSIEYRIRHKDGRYVWVQDQGFAVRDTNGQVVRVVGASADITEQQAILR 451

Query: 318 GENLTPETVDKCPI-PFFVYSHGNLFYANPSFL---LLTKYKSVDDI------------E 361
            +       D+  I      S   +  A  +           + + +             
Sbjct: 452 EQQ--AALRDRQQIETNLRESEERIRLATSAAELGMWFWNITTNELVWTEKCKELFGLGP 509

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                  L       ++       + R  +  +       ++ W+  +   +        
Sbjct: 510 EVEMSYELFLNCIHPEDRQRLNEAIARCFQEKVEYDIEYRSL-WSDGSIHWIAAKGRVFY 568

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
               +     G   +    +  +  +     QL  ++++   GI     +  I   N A 
Sbjct: 569 EADDQPGRMMGTAQDITGRKQIENDLRQRETQLRRLVDSNIIGIMFATPD-HITEANEAF 627

Query: 482 SKLFGYPVEDILRKPFT--VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
            ++ GY  E++L               ++    + ++L++ +    EK  +   K+   +
Sbjct: 628 LEMVGYTREELLAGKVRRKQMTPPEYHALDEQGIEQLLTVGVCNPFEKEYI--RKDGSRI 685

Query: 540 SLRIIIKKLPFSSC-YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
            + I    +      +   + D++  KQ +  L    +  ++ + +K +FLA +SHE+R+
Sbjct: 686 PILIGGALVEKDPPSWICFILDLTPRKQLEQTLRQQTEELKQANQNKDEFLAILSHELRS 745

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
           PL  I+G+S ++K+++F      R       I+R+  L + ++++LLD+S+I  GK+NL 
Sbjct: 746 PLNPILGWSSLLKSRKFDEATTNRA---LETIERNTQLQIKLIDELLDVSRIIRGKLNLT 802

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718
           F  V+L   +  A+  V+L A  K I I+     N+ ++  D   ++Q+  N+LSNA+ F
Sbjct: 803 FATVNLASVIDAALETVRLIAESKSIQIKIQLDPNVGKVSGDYYRLQQVVGNLLSNAVKF 862

Query: 719 TPSGGQIIISTTHTSN---EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           TP  G + +S + +        +++V+DTG G++   L    + F Q  +S+  +  G G
Sbjct: 863 TPPNGSVEVSLSSSGELASHSALIQVKDTGQGISPEFLPHVFEYFRQADSSRTRKFGGLG 922

Query: 776 LGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFPLYDTS 814
           LGL + + +V+ + G     S    +G +  +  P+   S
Sbjct: 923 LGLAIVRNLVELHGGTVTAASPGEGQGAIFTVRLPVMKES 962



 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 52/141 (36%), Gaps = 10/141 (7%)

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF----TVFLEQNTPSVMNH 511
           S+L +  +G+ +   +G I + N    ++ G   E ++ +        FL ++   + N 
Sbjct: 28  SLLASGEEGMVLQLADGTIQACNATCDRILGLTTEQLVGQNLLDSKWQFLHEDGSPLPNE 87

Query: 512 YLTEILSLDLRQT-LEKITLGSTKEEKLLSLRIIIKKLPFSS-----CYSLTMHDISEWK 565
               I +    +  L  +        +L+ L +  + L             T  DI+E+K
Sbjct: 88  THPAIAAQKTGKPCLNVVCGFYKPNGQLVWLLLSSQPLFQGGVDTPFAIVTTFLDITEFK 147

Query: 566 QEKNKLSHAKKIAEKESSHKS 586
           Q + +         ++   +S
Sbjct: 148 QAQLEEKGNCTEDTQQVEEES 168


>gi|20090015|ref|NP_616090.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
 gi|19914982|gb|AAM04570.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
          Length = 849

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 119/522 (22%), Positives = 214/522 (40%), Gaps = 19/522 (3%)

Query: 293 QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLL 351
           +  +                      E       ++ P     +  G  +   N SF+ L
Sbjct: 306 EGEAAVLSIGRDISEQKKNEEALRASERKYRTLFEEFPGGIAQFDTGGVITLCNESFVNL 365

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411
           T  +  + I  +  L +LLD     + +              ++    L  I  N + ++
Sbjct: 366 TGNREKEKI--SFSLLSLLDGGNPDEKSGTYL--------PEVSVHNDLKYISRNGKEAI 415

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471
            +        ++  E      +  +    +  +     +   L  ++++        +R 
Sbjct: 416 PVAITYKPLMSENSELAGGIVLVEDLTGIKRLEAVRLQQTECLRKLVDSVPVPAFCKDRN 475

Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
           GI ++ N A         E+IL K    F         +    E+L     +     T  
Sbjct: 476 GIYIACNTAFETFMSMQKEEILGKSMHNFAPSEIAEKCHTMDIELLKHKKTRVY--ETSI 533

Query: 532 STKEEKLLSL----RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
              +  +  +     +        S     M DI+E KQ + K+  AK  AE  +  K +
Sbjct: 534 KFADGSIHQIMFNKLVFSGVTEEDSMLLGIMIDITEHKQAEEKMLQAKMAAEAANRAKIN 593

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           F+  +SHE+RTPL A+IGFS+++ ++  GPL N +   Y   I +SG+ +LD++ND+LDI
Sbjct: 594 FIVNMSHELRTPLNAVIGFSDLLLSETAGPL-NEKQKRYTENISKSGSHLLDVINDVLDI 652

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707
           S++E G + L++E V +   + E   ++   + EK I I       +  I  D    KQI
Sbjct: 653 SRLELGNIELYYETVDIPGVIEEVRRVLSSLSAEKNIRIEYKVEQGLKTIDVDRVKFKQI 712

Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
             N+L+NAI F+   G++ I    +  + V + V+D G+G+   +  +   PF QI  S 
Sbjct: 713 LYNLLNNAIKFSSEDGKVNIK-ARSEGDMVEISVKDEGIGINEADYARVFLPFVQIDESI 771

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             +  G GLGL L K  V+ + G+ ++ ++P KG+      P
Sbjct: 772 SRKHGGVGLGLALVKRFVELHGGQVWVEASPGKGSTFTFRIP 813



 Score = 80.8 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 49/369 (13%), Positives = 111/369 (30%), Gaps = 21/369 (5%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D  G + E +    +  G    K++G  + D+   +H+       + LK+   +  +T  
Sbjct: 227 DMKGRVMEANHVACEIFGYTRSKILGKHIKDLQTGIHLIEFGQQIEKLKQTGYFIFETDS 286

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGF-GIVHVNRVDNDPRALGKRLDKKFSHLH 208
              +GT    P ++    I     E+ G      I              +  ++K+  L 
Sbjct: 287 LRKDGT--VTPQEINNRLI-----EYEGEAAVLSIGRDISEQKKNEEALRASERKYRTLF 339

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           E   G  +       I        +L    +   ++       D    ++       E S
Sbjct: 340 EEFPGGIAQFDTGGVITLCNESFVNLTGNREKEKISFSLLSLLDGGNPDEKSGTYLPEVS 399

Query: 269 LPEQEDFHTINL-NQYTKKQYFGTLQNNSKESFEYLSHRNH----PSLSAYFDEGENLTP 323
           +     + + N          +  L + + E    +           L A   +      
Sbjct: 400 VHNDLKYISRNGKEAIPVAITYKPLMSENSELAGGIVLVEDLTGIKRLEAVRLQQTECLR 459

Query: 324 ETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
           + VD  P+P F    +G     N +F      +  + +  +          ++++     
Sbjct: 460 KLVDSVPVPAFCKDRNGIYIACNTAFETFMSMQKEEILGKSM---HNFAPSEIAEKCHTM 516

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
            + L +  +T         +I++   +   + F     +    E+    GI  +  + + 
Sbjct: 517 DIELLKHKKT----RVYETSIKFADGSIHQIMFNKLVFSGVTEEDSMLLGIMIDITEHKQ 572

Query: 443 NKRKMEIEV 451
            + KM    
Sbjct: 573 AEEKMLQAK 581



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 54/150 (36%), Gaps = 8/150 (5%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           K E +  +  +++E+++D I I + +G ++  N    ++FGY    IL K          
Sbjct: 204 KRESKDKKFKTLIESSNDSILIHDMKGRVMEANHVACEIFGYTRSKILGKHIKDLQTGIH 263

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI--IIKKLPFSSCYSLTMHDISE 563
                  + ++            T    K+  +    I   + +    +       DISE
Sbjct: 264 LIEFGQQIEKLKQTG---YFIFETDSLRKDGTVTPQEINNRLIEYEGEAAVLSIGRDISE 320

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
            K+ +  L  +++          +F   ++
Sbjct: 321 QKKNEEALRASERKYRTLFE---EFPGGIA 347


>gi|307718270|ref|YP_003873802.1| hypothetical protein STHERM_c05640 [Spirochaeta thermophila DSM 6192]
 gi|306531995|gb|ADN01529.1| hypothetical protein STHERM_c05640 [Spirochaeta thermophila DSM 6192]
          Length = 1272

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 131/767 (17%), Positives = 270/767 (35%), Gaps = 67/767 (8%)

Query: 89   IDAHGYLKEISEELPK----TIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144
             D+   +   +           G     ++G  +  VS  +       + +  ++ +T  
Sbjct: 272  TDSDRRILYANTAFETWAYLLEGRPLPSLVGKPISLVSRAIDAHLRPLLEEA-EKSDTVI 330

Query: 145  GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
             +   W  +     +  ++   P++   +++   R   I+H          L  +  + +
Sbjct: 331  LREISW--QHRAEEITTEVTIFPLH---KDYETARWLIILHNITHRKRTERLLSQQKQFY 385

Query: 205  SHLHEIKKGHSSVEKEKYDIF----------------SQQSPPPHLRMKNKVSSLTEYYA 248
              + E             D                   +    P  R+     S      
Sbjct: 386  RQMLEALPIGVYTLDPLSDYTVSLWNPYMERITGVPRQKALGVPETRLFPPPLSEELEVL 445

Query: 249  HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ----------------YFGTL 292
            ++  +       L+ S E   P QE+   + + +                          
Sbjct: 446  NRKILEDPLTRVLVPSMEVEFPHQEESRIVKVQKRGVLTPEGELDHILVLLEDITEQRRT 505

Query: 293  QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLL 351
            +   +    +L        +        +         +          +   NP+   L
Sbjct: 506  EEELERYRNHLEEEVARKSAELARAAMEMDAILRSTESVAICSMDRDLRIQIFNPTLARL 565

Query: 352  TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411
            ++             + L     +          +               ++       L
Sbjct: 566  SRMYFKRPPRREMRFTDLFPTRTMQRQVETAVSRVL--SGQTFTTR---FSVSRRNLLPL 620

Query: 412  AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471
             +  +   K N+  E +    I  +       +R+M +      +I +    G  II+  
Sbjct: 621  HLEVVISPKRNEGGEILGATVIAMDITQRATVERQMRL----FKAIADTAPYGTVIIDAN 676

Query: 472  GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
              I+  N  ++++ GY +E+++ +  ++F  +     +   LT    + +  +  +    
Sbjct: 677  HTIVYANPYMARIHGYRLEEVMGQHLSIFHTEEQYEKLIEELTRAEDVGVMPS--QEIWH 734

Query: 532  STKEEKLLSLRIIIKKLPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
              + +    +      +     +     +   D+S  K+ + KL  AK+ AE+    KS+
Sbjct: 735  VYQGQLPFPMLTTATFIKDEEGHVTYIGIVSLDMSLQKEAEQKLKEAKEEAERAMRAKSE 794

Query: 588  FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
            FLA +SHEIRTPL AIIGF++++         + +   Y + I  SG  +L ++ND+LD+
Sbjct: 795  FLANMSHEIRTPLNAIIGFTDLLA----SSFPSGKEASYLDAIRSSGKNLLMLINDILDL 850

Query: 648  SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQ 706
            SKIE+GKM L + PV L   + E  ++ +     K +     +A  +P  +  D   ++Q
Sbjct: 851  SKIEAGKMTLSYSPVDLRSFIEEIANIFRTQVEHKGLSFILDYAPALPPTVEIDELRLRQ 910

Query: 707  IALNILSNAIHFTPSGG-QIIISTTHTSNE---EVILRVRDTGVGMTNYELEKAMKPFGQ 762
            +  N++ NAI FT  G  ++ +  +  + E   ++ + V DTG+G+   E E   + F Q
Sbjct: 911  VLFNLIGNAIKFTEQGHVKVQVRGSLHTEESKVDLTISVEDTGIGIRPEEREAIFQSFHQ 970

Query: 763  IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
                   +  GTGLGL ++K +V+   G   + S   KGT   +  P
Sbjct: 971  SSGQDTRKYGGTGLGLTISKRLVEMMGGTISVESEYGKGTTFTVNIP 1017



 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 56/357 (15%), Positives = 108/357 (30%), Gaps = 19/357 (5%)

Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTI---NLNQYTKKQYFGTLQNNSKESFEYLSH 305
             + +   E     + EE      + FH          T               F  L  
Sbjct: 182 EPEFLATVEPDARKSLEEFLAAPHDTFHGRFSFPGRGRTSFLVIPLPVQGRILPFLLLDV 241

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAG 364
                      E   L    +D       V      + YAN +F           +    
Sbjct: 242 HAETLYFESLQEQRRLFTSVLDSFTDYILVTDSDRRILYANTAFETW------AYLLEGR 295

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
            L +L+  P    + AI   +    +    + +  L  I W        T +     ++ 
Sbjct: 296 PLPSLVGKPISLVSRAIDAHLRPLLEEAEKSDTVILREISWQHRAEEITTEVTIFPLHKD 355

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR--EGIILSTNRAVS 482
            E      I       +  +R +  +      +LEA   G+  ++   +  +   N  + 
Sbjct: 356 YETARWLIILHNITHRKRTERLLSQQKQFYRQMLEALPIGVYTLDPLSDYTVSLWNPYME 415

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL----EKITLGSTKEEKL 538
           ++ G P +  L  P T          +     +IL   L + L    E        E ++
Sbjct: 416 RITGVPRQKALGVPETRLFPPPLSEELEVLNRKILEDPLTRVLVPSMEVEFPHQE-ESRI 474

Query: 539 LSL--RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
           + +  R ++          + + DI+E ++ + +L   +   E+E + KS  LAR +
Sbjct: 475 VKVQKRGVLTPEGELDHILVLLEDITEQRRTEEELERYRNHLEEEVARKSAELARAA 531


>gi|329924932|ref|ZP_08279879.1| PAS domain S-box protein [Paenibacillus sp. HGF5]
 gi|328940316|gb|EGG36645.1| PAS domain S-box protein [Paenibacillus sp. HGF5]
          Length = 1003

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 133/772 (17%), Positives = 264/772 (34%), Gaps = 79/772 (10%)

Query: 87   WNIDA-HGYLKEISEELPKTIGNYAFKMIG--MRLCDVSDILHIDPNNHIGD-------- 135
            W  D     L   S+E+ +  G     +      L  +      +    +          
Sbjct: 267  WRWDLITHTLTY-SDEMRRIYGYQINAIEPNHDTLMSLVIPEDRERLEQVVRTAIQGKAD 325

Query: 136  ------LLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRV 189
                   LK   T       W +  TN   P+++                  G+      
Sbjct: 326  EIIYRIQLKDGQT-RTIRAQWEVSVTNEGRPMEM-----------------VGMAQDITE 367

Query: 190  DNDPRALGKRLDKKFSHLHEIKKGHSSVEK-EKYDIFSQQS---PPPHLRMKNKVSSLTE 245
                       + K+  + E      S    + +               R +  V + + 
Sbjct: 368  QVMIEQQSLENENKYKLITENSLDFISRSTIDCFTFLYCSPSCYALLGYRPEEMVGTSSF 427

Query: 246  YYAHKDDVLKTEK-YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
             Y + +D+   +         +   P    +   +      +     +     +  E +S
Sbjct: 428  DYVYAEDIAPLQDYLENCLEGKMLTPITFRYIHKDGRHIWFEVNCKYISTQDGQKNEIIS 487

Query: 305  HRNHPSLSAYFD----EGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDD 359
                 S     +    E E       +  P   + +   G+   AN +   LT Y   + 
Sbjct: 488  IARDISERKLMEFKLKESEQRYRSLFEYNPSAVYSMNLDGDYITANQNLQELTGYTLDEL 547

Query: 360  IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
            I        +   P +++ +  + +  +   +  I  S  L  I  +       T     
Sbjct: 548  IG-------MYFGPIVAEKDMARTLFHFNQAKEGIPQSYDLTIIHKDGRPIEINTIN--I 598

Query: 420  KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
                  E +   GI  +  +      +++    +L  +L   S+GI  ++  G +   N 
Sbjct: 599  PIFVEDEVVGVYGITRDITERIRTMEEIKKLSRELTLLLNTVSEGIIGLDIHGQVAFINP 658

Query: 480  AVSKLFGYPVEDILRKPFTVFLEQNTP-----SVMNHYLTEILSLDLRQTLEKITLGSTK 534
            A + +  Y     + +P    +++           +  L   +   +  +  +I L    
Sbjct: 659  AGAAMLDYEPTTTIGRPCDQIIKEIRHDGTFYRGEDSPLVRAVKQGVPLSRAEIVLWR-G 717

Query: 535  EEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
            +         +  +          +   DI++    + ++  AK+ AE+    K++FL  
Sbjct: 718  DGTSFLADYQVNPIWDQGERKGAVMVFRDITD----EKEIIRAKENAERADQAKTEFLTM 773

Query: 592  VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
            +SHE+RTP+  IIG  E++         +     Y + +  S   +L I+N++LD SKIE
Sbjct: 774  MSHELRTPMNGIIGMIELLSTTEL----DEDQQNYIHILMESSGSLLHILNEILDFSKIE 829

Query: 652  SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALN 710
            +G M L+ EP+ L   +   + L    A +K + +    + N+P ++  D   ++Q+ +N
Sbjct: 830  TGNMTLNHEPIDLRSLLEVVVDLFSAKAKQKGLSLSFINSANVPDVIIGDALRLRQVLVN 889

Query: 711  ILSNAIHFTPSGGQIIISTTH-----TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
            ++SNAI FT  G  I +S        T    +  +V+DTG+G+      +    F Q+  
Sbjct: 890  LISNAIKFTHEGS-ITMSVEGLRRTGTQEFTLAFQVKDTGIGIAPELQHQLFTSFSQLHP 948

Query: 766  SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
            S   +  GTGLGL ++K +V+   G   + S    G+      P +     H
Sbjct: 949  SLNRKYGGTGLGLAISKKLVELMGGVIGVESRENAGSSFYFTIPTHTLQDDH 1000



 Score =  137 bits (346), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 48/506 (9%), Positives = 135/506 (26%), Gaps = 27/506 (5%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150
           A G ++ IS      +G    +MIG         +  +     G L   ++++     + 
Sbjct: 155 ADGIIEYISPSATDILGYTQEEMIGQHRGKYYHQVDSEQMKEPGKLFSEKDSF--VRRIR 212

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
             EG   Y+  + +   I     E       G                   +        
Sbjct: 213 HKEGH--YLWFETSFQLIRGAQGEIDKVLAIG--RNITKRKTDEDTLAHAQRIAKIGSWR 268

Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270
               +       ++        +    N  + ++       + L  E+      +  +  
Sbjct: 269 WDLITHTLTYSDEMRRIYGYQINAIEPNHDTLMSLVIPEDRERL--EQVVRTAIQGKADE 326

Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330
                   +    T +  +     N     E +      +     ++             
Sbjct: 327 IIYRIQLKDGQTRTIRAQWEVSVTNEGRPMEMVGMAQDITEQVMIEQQSLENENKYKLIT 386

Query: 331 IPFFVY------SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
                +            Y +PS   L  Y+  + +  +            +++ A    
Sbjct: 387 ENSLDFISRSTIDCFTFLYCSPSCYALLGYRPEEMVGTSS------FDYVYAEDIAPLQD 440

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
            L       +        I  +  +           + Q  +      I  +  + ++ +
Sbjct: 441 YLENCLEGKMLTPITFRYIHKDGRHI-WFEVNCKYISTQDGQKNEIISIARDISERKLME 499

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            K++    +  S+ E     +  +N +G  ++ N+ + +L GY +++++   F   + + 
Sbjct: 500 FKLKESEQRYRSLFEYNPSAVYSMNLDGDYITANQNLQELTGYTLDELIGMYFGPIVAEK 559

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDI 561
             +    +  +      +           K+ + + +  I   +              DI
Sbjct: 560 DMARTLFHFNQAKEGIPQS---YDLTIIHKDGRPIEINTINIPIFVEDEVVGVYGITRDI 616

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSD 587
           +E  +   ++    +      +  S+
Sbjct: 617 TERIRTMEEIKKLSRELTLLLNTVSE 642



 Score = 67.7 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 40/267 (14%), Positives = 86/267 (32%), Gaps = 18/267 (6%)

Query: 323 PETVDKCPIP-FFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
            +  DK P     + +    +   N  F  +T+ K  + +++      +L    +     
Sbjct: 11  EQMFDKLPFGAILISAVDEPVAMVNDRFCEITETKRSNLLQLKPSEIQVLSNLSIQQTLE 70

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLA-MTFIPFEKANQFPENMPQNGIEPEDVD 439
                           S   + I+ +       +     E   Q         +EP  V 
Sbjct: 71  SFIY------DPTSTLSRDSYFIRQDGRQMHVTVRISLLEHPAQDRTPWIMCCLEPGTVQ 124

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
                  +      L  I ++  D I+I + +GII   + + + + GY  E+++ +    
Sbjct: 125 EGSTLPAIIKNEELLALISKSGQDLISISSADGIIEYISPSATDILGYTQEEMIGQHRGK 184

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YS 555
           +  Q     M          D       +     KE   L      + +  +        
Sbjct: 185 YYHQVDSEQMKEPGKLFSEKDS-----FVRRIRHKEGHYLWFETSFQLIRGAQGEIDKVL 239

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKES 582
               +I++ K +++ L+HA++IA+  S
Sbjct: 240 AIGRNITKRKTDEDTLAHAQRIAKIGS 266



 Score = 45.0 bits (105), Expect = 0.054,   Method: Composition-based stats.
 Identities = 40/354 (11%), Positives = 95/354 (26%), Gaps = 29/354 (8%)

Query: 74  FVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI 133
           F ++P        ++++  G     ++ L +  G    ++IGM    +     +      
Sbjct: 513 FEYNPSA-----VYSMNLDGDYITANQNLQELTGYTLDELIGMYFGPIVAEKDMARTLFH 567

Query: 134 GDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAA--LPIYSRNREFSGFRGFGIVHVNRVDN 191
            +  K         T+   +G     PI++    +PI+  + E  G   +GI        
Sbjct: 568 FNQAKEGIPQSYDLTIIHKDGR----PIEINTINIPIFVED-EVVGV--YGITRDITERI 620

Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD 251
                 K+L ++ + L                +           M +   + T       
Sbjct: 621 RTMEEIKKLSRELTLLLNTVSEGIIGLDIHGQVAFINPA--GAAMLDYEPTTTIGRPCDQ 678

Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQY----TKKQYFGTLQNNSKESFEYLSHRN 307
            + +          E S   +     + L++      +      L +           R 
Sbjct: 679 IIKEIRHDGTFYRGEDSPLVRAVKQGVPLSRAEIVLWRGDGTSFLADYQVNPIWDQGERK 738

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
              +       E       +                A   FL +  ++    +    G+ 
Sbjct: 739 GAVMVFRDITDEKEIIRAKENA---------ERADQAKTEFLTMMSHELRTPMNGIIGMI 789

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
            LL   +L ++      +L  S  + +     +         ++ +   P +  
Sbjct: 790 ELLSTTELDEDQQNYIHILMESSGSLLHILNEILDFSKIETGNMTLNHEPIDLR 843


>gi|291567579|dbj|BAI89851.1| two-component hybrid sensor and regulator [Arthrospira platensis
            NIES-39]
          Length = 1778

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 154/742 (20%), Positives = 277/742 (37%), Gaps = 71/742 (9%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            +DA G   +I++   + +G    +++G RL D       +      +L K+Q        
Sbjct: 956  LDAEGRYVKINDTELQWLGYSREQLLGRRLADFLTPESGEIFESNFELFKQQGYLKDLLL 1015

Query: 149  LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                   +   P+ L +  +Y+   E+   R    +         +   ++       + 
Sbjct: 1016 EMISSNGH-VFPVLLNSSAVYNPQGEYLYSR--STLFDITDLKSAQIALQKNHNLLQSIT 1072

Query: 209  EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
              +    + E          S    L + +           +D+                
Sbjct: 1073 IAQSQFITSENRLTIFEGLLS--SLLTLTDSEYGFIGEVMFRDN---------------- 1114

Query: 269  LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
                           T ++ F  ++         +S+      +  F +  +      D 
Sbjct: 1115 ------------GGATMEETFLKIRGVPYLKTHSISNVAWDEATEKFYQENHEKGMEFDN 1162

Query: 329  CPIPF-FVYSHGNLFYAN-PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
                F  V   G    AN PS                  L++ L  P  S +  +  V +
Sbjct: 1163 MNTLFGAVIMTGKPVIANSPSSDPRRGGTPN----GHPPLNSFLGLPFFSGSTMVGIVGI 1218

Query: 387  YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
                          H    +   +  +T     +  +      +     +  +  I K  
Sbjct: 1219 ANKPGG-------YHEEMIDDLQAFLVTCGNLIEGYRLHRKRNEAEEAKKAAEQEIAK-- 1269

Query: 447  MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP-VEDILRKPFTVFLEQNT 505
                  QL SI EA  DGI I+  +      N A   +FGY   ED++   +        
Sbjct: 1270 ------QLASI-EAAGDGIGIVQDDL-YQYVNHAHLVMFGYSEPEDLVGHSWRKIYSPTE 1321

Query: 506  PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
                 + +  IL  D   T     + + ++    +  + +  L           DIS+ +
Sbjct: 1322 IQRFENEVFPILMRDRYWTG--EAIATRQDGTSFAEELSLT-LTEDKLLICVCRDISDRR 1378

Query: 566  QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
            + + KL    +   + +  K +FLA +SHE+RTPL AI+G +E ++ + FG LG+ R  +
Sbjct: 1379 ETEAKLRQTNQELMRATRLKDEFLANMSHELRTPLNAILGMTEGMQEEVFGTLGD-RQKQ 1437

Query: 626  YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
                I+RS + +L+++ND+LD++KIE+G+M L     S+      +I+ ++  A +K I 
Sbjct: 1438 ALQTIERSASHLLELINDILDLAKIEAGEMKLDLNYTSIRPLCQSSIAFIKQQAFKKGIS 1497

Query: 686  IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT------SNEEVIL 739
            I       +P +  D R ++Q+ +N+L+NA+ FTPS G+I +               V  
Sbjct: 1498 INVQIPQALPDLYIDERRLRQVLINLLNNAVKFTPSRGKISLEVKLQPPPIDSDKSRVRF 1557

Query: 740  RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
             V DTG+G+   +L K  KPF QI ++   + EGTGLGL L K +V+ + G   + S   
Sbjct: 1558 AVIDTGIGINEEQLSKLFKPFTQIDSALNRQYEGTGLGLSLVKRIVEMHGGTVNVISKVG 1617

Query: 800  KGTLIEIIFP----LYDTSHPH 817
             G+      P    L  T+ PH
Sbjct: 1618 SGSQFIFEIPCDDILIGTNTPH 1639



 Score =  139 bits (351), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 58/548 (10%), Positives = 131/548 (23%), Gaps = 55/548 (10%)

Query: 86   TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
             +  D  G    ++EE  +  G    + IG+           D  N      +  +  + 
Sbjct: 547  VFRTDKEGDCIYVNEEYCQMTGRIPGETIGLSWQISVHPEDSDRINEAWKQTQANHHPFK 606

Query: 146  KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND----PRALGKRLD 201
            +       G N  + +    +P +S     +G+   G +                   L 
Sbjct: 607  EEYRLE-AGENQ-LWVFGQIVPEFSVEETVNGY--VGTITDISEQKAALCEREKAETALQ 662

Query: 202  KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM------------------------- 236
                 L    K  +       D          + +                         
Sbjct: 663  DLNQSLEATVKQRTQELSHLSDRLQLAIKSAQMGIWDWDISQNHLTWDDQMYKIYGVSPL 722

Query: 237  --KNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294
                 V         +D  L           E     +      + +    K     ++N
Sbjct: 723  ECPQTVELWKNSLHPEDAELTQAILQESLRGEREFNPEFRIVRPDGSIVFIKANALIIRN 782

Query: 295  NSKESFEYLSHRNHPSLSAYFDEGENLTPE-------TVDKCPIPFFVYSHGNLFYANPS 347
               E    +      + S   +                +D   I     + G + YAN  
Sbjct: 783  PEGEPQRMIGTNVDITESKQAESDRQQLLRELSDLKLAIDHSAIVAVTDASGVITYANNR 842

Query: 348  FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
            F  ++ Y   + I    G +  +       ++    +    S              +   
Sbjct: 843  FCEISGYSQEELI----GKTHRIINSGYHPHSFFTNLWRTISSGKVWHGEICN---RSKN 895

Query: 408  ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
                          N   +      I  +    +  + ++     ++  +      G   
Sbjct: 896  GFIYWTESTIVPFLNSQKKVSQYLAIRFDITARKQAEARLLDYSHEIEDLYNKAPCGYHS 955

Query: 468  INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
            ++ EG  +  N    +  GY  E +L +    FL   +  +              + L  
Sbjct: 956  LDAEGRYVKINDTELQWLGYSREQLLGRRLADFLTPESGEIFESNFELFKQQGYLKDLLL 1015

Query: 528  ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH----DISEWKQEKNKLSHAKKIAEKESS 583
              +  +    +  + +    +       L       DI++ K  +  L     + +  + 
Sbjct: 1016 EMI--SSNGHVFPVLLNSSAVYNPQGEYLYSRSTLFDITDLKSAQIALQKNHNLLQSITI 1073

Query: 584  HKSDFLAR 591
             +S F+  
Sbjct: 1074 AQSQFITS 1081



 Score = 83.9 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 35/272 (12%), Positives = 93/272 (34%), Gaps = 21/272 (7%)

Query: 335 VYSHGNLFYANPSFLLLTKYKS--VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
           +Y  G++F A  + +         +  ++     + L+    LS++ A  P         
Sbjct: 420 IYQDGDIFVA--ADIDQVGLSECHLSLLKQLEVRANLVVPIVLSNHEAESPSQSLW---G 474

Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
             A     +T  W+ E    +  +  + A    + +  + ++ E  + +  +  ++    
Sbjct: 475 LFAIHQCSNTRLWSSEEIQMVQQLALQVAIAIQQAIAYDELQKELQERQKIQTYLQETEE 534

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
           +  ++ +    G+   ++EG  +  N    ++ G    + +   + + +       +N  
Sbjct: 535 RYATLTDLIPVGVFRTDKEGDCIYVNEEYCQMTGRIPGETIGLSWQISVHPEDSDRINEA 594

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK----LPFSSCYSLTMHDISEWK--- 565
             +  +       ++       E + L +   I          + Y  T+ DISE K   
Sbjct: 595 WKQTQAN--HHPFKEEYRLEAGENQ-LWVFGQIVPEFSVEETVNGYVGTITDISEQKAAL 651

Query: 566 ----QEKNKLSHAKKIAEKESSHKSDFLARVS 593
               + +  L    +  E     ++  L+ +S
Sbjct: 652 CEREKAETALQDLNQSLEATVKQRTQELSHLS 683


>gi|323701833|ref|ZP_08113503.1| multi-sensor hybrid histidine kinase [Desulfotomaculum nigrificans
           DSM 574]
 gi|323533137|gb|EGB23006.1| multi-sensor hybrid histidine kinase [Desulfotomaculum nigrificans
           DSM 574]
          Length = 1274

 Score =  394 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 106/547 (19%), Positives = 214/547 (39%), Gaps = 39/547 (7%)

Query: 280 LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY-SH 338
                       L + S +    +      +     ++   L  +  +       ++  +
Sbjct: 247 QGPRRILTSGSFLHDISGKYAGGVQVFVDVTERYNMEQALRLHKQANNSSSECVTIFNEN 306

Query: 339 GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398
             L YAN + + L      + +    G+  +       D      +              
Sbjct: 307 AQLIYANQAAIKLFNRSMAELMG--LGIEEVYPG---GDKILFNLIKGDFWQGELTPV-- 359

Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT-------RINKRKMEIEV 451
                      ++ +            + +       +  +        R  ++++E E 
Sbjct: 360 -------KDNPNIYVHVHANPIRENKGKIIGFYVAARDITEHKMAQLRLREARQEIEREA 412

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
            +L +I+   +  IA+ +    I+  N    K+ G   ++++ +      +  T   +  
Sbjct: 413 AKLRAIVSILNASIALADANDRIIEVNEKCLKITGKSRQELIGRSIWDLHQGETLDRVRQ 472

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK-KLPFSSCYSLTMHDISEWKQEKNK 570
            +           +    +    EE  + + I    +        L + D++E    K +
Sbjct: 473 IVDTYKQDPNHPPIN---ITRRLEESDVIMSIQPVYRDKIYDGILLMVVDVTEVAAAKRQ 529

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
              A++ AE+ +  KS+FLA +SHEIRTP+  I+GF+E++         N +  E    I
Sbjct: 530 AEEAREAAERANQAKSEFLANMSHEIRTPMNGILGFAEILLQTNL----NSQQEESVRII 585

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
            + G  +LD++ND+LD+SKIESGKM L     SL + + EA+++++    EK + I+ S 
Sbjct: 586 QQCGENLLDLINDILDLSKIESGKMVLEQTTFSLRKLIYEAVNVIEPKLIEKGVEIKISI 645

Query: 691 ANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV-------ILRVR 742
             ++P     D   ++Q+  N+LSNA  FT  G  + +      +  V       +  V 
Sbjct: 646 QKDLPDYFKGDPTRIRQVLNNLLSNAAKFTHEG-HVEVKVNGQKDHSVETDSFTLVFSVS 704

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG+G+   +L+   + F Q   S   +  GTGLGL +++++++   G+  + S   +G+
Sbjct: 705 DTGIGIPREKLDLIFESFTQADGSTTRKYGGTGLGLTISRSLINLMGGQITVESEVNRGS 764

Query: 803 LIEIIFP 809
                 P
Sbjct: 765 KFSFSIP 771



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 55/165 (33%), Gaps = 7/165 (4%)

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
               G E    + +   R +  E  +L +I E+ ++ + +++    I   N A +  FG 
Sbjct: 142 WAGEGPESRLTEMQAVNRALTNEKNKLRTIFESMNECVFVVDSNMRITEINAAAAAYFGV 201

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
             E++L       L  N      H    + S    + +E +        ++L+       
Sbjct: 202 APEEVLGMHCASLLGCNCDLGKCHLYHAMKSGSCYKDIEIVINTKQGPRRILT---SGSF 258

Query: 548 LPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
           L   S           D++E    +  L   K+     S   + F
Sbjct: 259 LHDISGKYAGGVQVFVDVTERYNMEQALRLHKQANNSSSECVTIF 303



 Score = 64.3 bits (155), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 30/365 (8%), Positives = 95/365 (26%), Gaps = 21/365 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + +D++  + EI+       G    +++GM    +          H+   +K  + +  
Sbjct: 179 VFVVDSNMRITEINAAAAAYFGVAPEEVLGMHCASLLGCNCDLGKCHLYHAMKSGSCYKD 238

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
              +   +     +    +   ++  + +++G  G  +        +     +   +  +
Sbjct: 239 IEIVINTKQGPRRILT--SGSFLHDISGKYAG--GVQVFVDVTERYNMEQALRLHKQANN 294

Query: 206 HLHE------IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
              E               +    +F++           +V    +      +++K + +
Sbjct: 295 SSSECVTIFNENAQLIYANQAAIKLFNRSMAELMGLGIEEVYPGGDKIL--FNLIKGDFW 352

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
               +     P        N  +  K +  G        +   ++           +   
Sbjct: 353 QGELTPVKDNPNIYVHVHANPIRENKGKIIGFYVAARDITEHKMAQLRLREARQEIEREA 412

Query: 320 NLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
                 V        +      +   N   L +T     + I  +            + +
Sbjct: 413 AKLRAIVSILNASIALADANDRIIEVNEKCLKITGKSRQELIGRSIWD----LHQGETLD 468

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
              + V  Y+ D      +      +   E+ + M+  P  +   +   +       E  
Sbjct: 469 RVRQIVDTYKQDPNHPPINIT----RRLEESDVIMSIQPVYRDKIYDGILLMVVDVTEVA 524

Query: 439 DTRIN 443
             +  
Sbjct: 525 AAKRQ 529



 Score = 44.6 bits (104), Expect = 0.076,   Method: Composition-based stats.
 Identities = 20/136 (14%), Positives = 49/136 (36%), Gaps = 7/136 (5%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           DA+  + E++E+  K  G    ++IG  + D+     +D    I D  K+          
Sbjct: 430 DANDRIIEVNEKCLKITGKSRQELIGRSIWDLHQGETLDRVRQIVDTYKQDPNHPPINIT 489

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
             +E ++    + ++  P+Y R++ + G     +V         +   +   +     ++
Sbjct: 490 RRLEESD----VIMSIQPVY-RDKIYDGI--LLMVVDVTEVAAAKRQAEEAREAAERANQ 542

Query: 210 IKKGHSSVEKEKYDIF 225
            K    +    +    
Sbjct: 543 AKSEFLANMSHEIRTP 558


>gi|209528198|ref|ZP_03276667.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
 gi|209491364|gb|EDZ91750.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
          Length = 1778

 Score =  394 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 153/742 (20%), Positives = 278/742 (37%), Gaps = 71/742 (9%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            +DA G   ++++   + +G    +++G RL D       +      +L K+Q        
Sbjct: 956  LDAEGRYVKVNDTELQWLGYSREQLLGRRLADFLTPDSREIFESNFELFKQQGYLKDMLL 1015

Query: 149  LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                   +   P+ L    +Y+   E+   R    +         +   ++       + 
Sbjct: 1016 EMISSNGH-VFPVLLNYSAVYNPQGEYLYSR--STLFDITDLKSAQIALEKNHNLLQSIT 1072

Query: 209  EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
              +    + E          S    L + +           +D+                
Sbjct: 1073 LAQSQFITSENRLTIFDGLLS--SLLTLTDSEYGFIGEVMFRDN---------------- 1114

Query: 269  LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
                           T ++ F  ++         +S+      +  F +  +      D 
Sbjct: 1115 ------------GGATMEETFLKIRGVPYLKTHSISNVAWDEATEKFYQENHEEGMEFDN 1162

Query: 329  CPIPF-FVYSHGNLFYAN-PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
                F  V   G    AN PS                  L++ L  P  S +  +  V +
Sbjct: 1163 MNTLFGAVIMTGKPVIANSPSSDPRRGGTPN----GHPPLNSFLGLPFFSSSTLVGIVGI 1218

Query: 387  YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
                          H    +   +  +T     +  +      +     +  +  I K  
Sbjct: 1219 ANKPGG-------YHEEMIDYLQAFLVTCGNLIEGYRLHRKRNEAEEAKKAAEQEIAK-- 1269

Query: 447  MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP-VEDILRKPFTVFLEQNT 505
                  QL SI EA  DGIAI+  +      N A   +FGY   ED++   +        
Sbjct: 1270 ------QLASI-EAAGDGIAIVQDDL-YQYVNHAHLVMFGYSEPEDLVGHSWRKIYSPTE 1321

Query: 506  PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
                 + +  I+  D   T     + + ++    +  + +  L   +       DIS+ +
Sbjct: 1322 IQRFENEVFPIVMRDRYWTG--EAIATRQDGTSFAEELSLT-LTEDNLLICVCRDISDRR 1378

Query: 566  QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
            + + KL    +   + +  K +FLA +SHE+RTPL AI+G +E ++ + FG LG+ R  +
Sbjct: 1379 ETEAKLRQTNQELMRATRLKDEFLANMSHELRTPLNAILGMTEGMQEEVFGTLGD-RQKQ 1437

Query: 626  YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
                I+RS + +L+++ND+LD++KIE+G+M L     S+      +I+ ++  A +K I 
Sbjct: 1438 ALQTIERSASHLLELINDILDLAKIEAGEMKLDLNYTSIRPLCQSSIAFIKQQAFKKGIS 1497

Query: 686  IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT------SNEEVIL 739
            I       +P +  D R ++Q+ +N+L+NA+ FTPS G+I +               V  
Sbjct: 1498 INVQIPQALPDLYIDERRLRQVLINLLNNAVKFTPSRGKISLEVKLQPPPIDSDKSRVRF 1557

Query: 740  RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
             V DTG+G+   +L K  KPF QI ++   + EGTGLGL L K +V+ + G   + S   
Sbjct: 1558 AVIDTGIGINEEQLSKLFKPFTQIDSALNRQYEGTGLGLSLVKRIVEMHGGTVNVISKVG 1617

Query: 800  KGTLIEIIFP----LYDTSHPH 817
             G+      P    L  T+ PH
Sbjct: 1618 SGSQFIFEIPCDDILIGTNTPH 1639



 Score =  142 bits (357), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 60/548 (10%), Positives = 131/548 (23%), Gaps = 55/548 (10%)

Query: 86   TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
             +  D  G    ++EE  +  G    + IG+           D  N      +  N    
Sbjct: 547  VFRTDKEGDCIYVNEEYCQMTGRIPGETIGLSWQISVHPEDSDRINEAWKQTQ-VNHHPF 605

Query: 146  KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND----PRALGKRLD 201
            K       G N  + +    +P +S     +G+   G +                   L 
Sbjct: 606  KEEYRLEAGENQ-LWVFGQIVPEFSVEETVNGY--VGTITDISEQKAALCEREKAETALQ 662

Query: 202  KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM------------------------- 236
                 L    K  +       D          + +                         
Sbjct: 663  DLNQSLEATVKQRTQELSHLSDRLQLAIKSAQMGIWDWDISQNHLTWDDQMYKIYGVSPL 722

Query: 237  --KNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294
                 V         +D  L           E     +      + +    K     ++N
Sbjct: 723  ECPQTVELWKNSLHPEDAELTQAILQESLRGEREFNPEFRIVRPDGSIVFIKANALIIRN 782

Query: 295  NSKESFEYLSHRNHPSLSAYFDEGENLTPE-------TVDKCPIPFFVYSHGNLFYANPS 347
               E    +      + S   +                +D   I     + G + Y N  
Sbjct: 783  PEGEPQRMIGTNVDITESKQAESDRQQLLRELSDLKLAIDHSAIVAVTDASGVITYVNNR 842

Query: 348  FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
            F  ++ Y S + I    G S  +   +         +    S              +   
Sbjct: 843  FCEISGYSSEELI----GKSHRIVNSRCHPPGFFANLWRTISSGKVWHGEICN---RSKN 895

Query: 408  ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
             +            N   +      I  +    +  + ++     ++  +      G   
Sbjct: 896  GSIYWTESTIVPFLNSHKKVSQYLAIRFDITARKQAEARLLDYSHEIEDLYNKAPCGYHS 955

Query: 468  INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
            ++ EG  +  N    +  GY  E +L +    FL  ++  +              + +  
Sbjct: 956  LDAEGRYVKVNDTELQWLGYSREQLLGRRLADFLTPDSREIFESNFELFKQQGYLKDMLL 1015

Query: 528  ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH----DISEWKQEKNKLSHAKKIAEKESS 583
              +  +    +  + +    +       L       DI++ K  +  L     + +  + 
Sbjct: 1016 EMI--SSNGHVFPVLLNYSAVYNPQGEYLYSRSTLFDITDLKSAQIALEKNHNLLQSITL 1073

Query: 584  HKSDFLAR 591
             +S F+  
Sbjct: 1074 AQSQFITS 1081



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/200 (12%), Positives = 67/200 (33%), Gaps = 14/200 (7%)

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
           W  E    +  +  + A    + +  + ++ E  + +  +  ++    +  ++ +    G
Sbjct: 487 WLSEEIQIVQQLALQVAIAIQQAIAYDDLQRELQERQQIQTCLQETEERYATLTDLIPVG 546

Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
           +   ++EG  +  N    ++ G    + +   + + +       +N    +         
Sbjct: 547 VFRTDKEGDCIYVNEEYCQMTGRIPGETIGLSWQISVHPEDSDRINEAWKQTQVN--HHP 604

Query: 525 LEKITLGSTKEEKLLSLRIIIKK----LPFSSCYSLTMHDISEWK-------QEKNKLSH 573
            ++       E + L +   I          + Y  T+ DISE K       + +  L  
Sbjct: 605 FKEEYRLEAGENQ-LWVFGQIVPEFSVEETVNGYVGTITDISEQKAALCEREKAETALQD 663

Query: 574 AKKIAEKESSHKSDFLARVS 593
             +  E     ++  L+ +S
Sbjct: 664 LNQSLEATVKQRTQELSHLS 683


>gi|75910629|ref|YP_324925.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
 gi|75704354|gb|ABA24030.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
          Length = 1002

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 117/781 (14%), Positives = 265/781 (33%), Gaps = 83/781 (10%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK-RQNTWY 144
            W    +G L +++      +G    + + +    ++   ++     I + L+       
Sbjct: 22  LWR--KNGALIDVNPTYATILGRTVPETLNLNYWQITPENYLASERTILEQLEQTGCHQA 79

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNR----VDNDPRALGKRL 200
            +      +G    VP+ ++ + I  ++ E   +     +   R           + K+ 
Sbjct: 80  YEQEYLHKDGHL--VPVKVSTVMI-EKDGEKLMWSSVEDISNIRQTQKERQQSEKILKQS 136

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSP---PPHLRMKNKVSSLTEYYAHKDDVLKTE 257
           + ++  L         V   +   F  +           + +     +     D     E
Sbjct: 137 EARYRSLVTTNTQIIWVSSPEGICFELKDWIAYTGQTLAEAENGGWIDAVHPDDRGYTGE 196

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS----HRNHPSLSA 313
            + +  +  S    +      + N      +   +        E++       +     A
Sbjct: 197 AWGIAVANRSQYQIEYRIRGKDGNYRYFWVWGAPVIEEDGNVREWIGTCTDIHDRKLAEA 256

Query: 314 YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLL-TKYKSVDDIEIAGGLSTLLDA 372
                +      V       +  +      ++     +    ++  ++E  G L  +   
Sbjct: 257 ENQRLKERYRSLVTASSQIVWGTTPEGWGISSEMLTWIAYTGQNEAEVEGWGWLDPIHPD 316

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
            +     A    +  R      +     + ++         +        Q        G
Sbjct: 317 DRTRSLEAWNAAVANR------SIYQTEYQLRGKDGTYRYFSVCGVPVLKQDGSIQEWIG 370

Query: 433 IEPEDVDTRINKRKMEIEVMQLCS---------------------ILEATSDGIAIINRE 471
              +  D ++ +  +     QL +                     IL+  +DG+ +++  
Sbjct: 371 TCTDIHDRKLAEMALRQLNQQLEARVAERTAALQNTLAEAQGLNAILDNLADGLLVVDTT 430

Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
           G I   N A   + G     +         ++     +   +    S         + L 
Sbjct: 431 GQITHYNPAFLAMHGLTANTLNGH-----YQELPIFGLADLIEHTRSHPGEVFTADVALA 485

Query: 532 STKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
             +  + +   I  +            +L + D++  K+                  K+D
Sbjct: 486 KDRIGQAVGTAIFKRTDTQEVAACFGSALLIRDVTAEKEI--------------DKMKTD 531

Query: 588 FLARVSHEIRTPLTAIIGFS----EVIKNQRFGPLGNPRYI---------EYANYIDRSG 634
           F++ VSHE+RTPLT+++GF+    E ++   F  L               +  N I    
Sbjct: 532 FISTVSHELRTPLTSVLGFASIIQEKLQKDVFPILSTEDRKLQKTIKRVGDNLNIIVSEA 591

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
             +  ++ND+LDI+K+E+GK+    +P+   E +  A +          + + T   + +
Sbjct: 592 ERLTSLINDVLDIAKMEAGKVEWQMQPIDPGELLDWATTSTAALFETNGLQLLTEIESGL 651

Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELE 754
           P+I+ D   + Q+ +N++SNA+ FT  G  +        +  V + V DTGVG+   +  
Sbjct: 652 PQIIGDRNRLLQVLINLISNAVKFTEFGS-VTCRVKQDKDG-VCISVIDTGVGIAPEDQP 709

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           K  + F Q+ ++   + +GTGLGLP+ K +V+ + G+ ++ S P  G++     P+Y ++
Sbjct: 710 KVFEKFRQVGDTLTDKPKGTGLGLPICKQIVEHHGGRIWVESEPGHGSVFSFHIPIYASN 769

Query: 815 H 815
           H
Sbjct: 770 H 770



 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 52/131 (39%), Gaps = 4/131 (3%)

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
             + E    G+ +  + G ++  N   + + G  V + L   +     +N  +     L 
Sbjct: 10  RLLWEKCPVGLVLWRKNGALIDVNPTYATILGRTVPETLNLNYWQITPENYLASERTILE 69

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL--TMHDISEWKQEKNKLS 572
           ++      Q  E+  L   K+  L+ +++    +       +  ++ DIS  +Q + +  
Sbjct: 70  QLEQTGCHQAYEQEYL--HKDGHLVPVKVSTVMIEKDGEKLMWSSVEDISNIRQTQKERQ 127

Query: 573 HAKKIAEKESS 583
            ++KI ++  +
Sbjct: 128 QSEKILKQSEA 138


>gi|186474026|ref|YP_001861368.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia phymatum
           STM815]
 gi|184196358|gb|ACC74322.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia phymatum
           STM815]
          Length = 869

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 116/750 (15%), Positives = 247/750 (32%), Gaps = 38/750 (5%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144
           F W  D  G ++ ++    + +G  A  ++G    +      I+P       +   N   
Sbjct: 11  FVWRADRAGAVRYVNPWASRYLGLPAPHIVGRNWHEFVHPDDINPVLDALRQMHDGNLLR 70

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI----VHVN-RVDNDPRALGKR 199
                  + G  ++    L        +       G             +        K 
Sbjct: 71  NVDVRL-LRGDGVFHWHTLHLQAQRDESGRIGDTVGVATDIHHCRHAWAMYEASERRLKA 129

Query: 200 LDKKFSHLH---EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256
             +         ++K  H  + ++  +++S  S    + + +  + +             
Sbjct: 130 ACQGAGMGAWEWDMKSRHVRMTEQLAELYSFPSGTDAVTLTDLWNRVAPEQREPFQQEVA 189

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
           +        E               +      F      S             +      
Sbjct: 190 QALERGGPFELDFQLDGTAAPPRWLRMRGHPEFDQQGVLSCVHGVTFDISRQRAAEERLI 249

Query: 317 EGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
             E      V+      +  ++ G +  A+  +   T       +E  G L      P  
Sbjct: 250 LSERRYRALVESTGALVWSAHADGEIRPADEPWGKFTG-ADPQRLENWGWLD--FVHPDD 306

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
            +      + + R D T    + R+        +   +        +         G   
Sbjct: 307 REMAREAWLTVLR-DGTAGTITFRMRRY---DGHYRMVQAHAAPLYDAHGTLQEWFGTTT 362

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV--EDIL 493
           +       +  +E   ++L   ++A    I  ++    + S   +   + G P   E + 
Sbjct: 363 DVTAQHEAQAAIEARSLRLTVAMQAAEIHIVAVD----LTSWTLSFE-MGGEPRVGETLT 417

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS- 552
            +     +  +   V++ Y+ ++ +        +  + + + E+ +    ++++      
Sbjct: 418 YEAALSRIHPDDRPVLDGYVRQLATGGDPGAHFEFRVLNPRGEQWMEGSALLQRGADGKP 477

Query: 553 -CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
                ++ DI+E K+ +  L        +    K +FLA ++HE+R PL  I      + 
Sbjct: 478 LRLIASVVDITERKRMELML-------RETDRRKDEFLAMLAHELRNPLAPIRTAIA-LF 529

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
            +  G   + R  +    + R    +  IV+DLL++S+I  G++ L  EP+ +  AV  A
Sbjct: 530 EKHDGK--DQRSADLIELMRRQTEHMTRIVDDLLEVSRITQGRIALQLEPILVGTAVYHA 587

Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
           +  +      +R  I+   ++    +  D+  + QI +NIL+NA  +TP  G I IS   
Sbjct: 588 VEAMAASVEARRQHIQVDVSDATAWVRGDVTRISQILVNILNNASKYTPEDGSISIS-AR 646

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
                V +   DTG G++   L K  + F Q   +      G G+GL L K +V+ + G 
Sbjct: 647 ADEMWVEIVTTDTGSGISAELLPKVFELFSQGERTLDRSNGGLGIGLSLVKKLVELHDGT 706

Query: 792 FYIFST-PAKGTLIEIIFPLYDTSHPHDCI 820
             + S    +GT + +  P       H  +
Sbjct: 707 IAVESEGEGRGTTVTVSLPRLHHHERHSAL 736



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 13/125 (10%), Positives = 35/125 (28%), Gaps = 6/125 (4%)

Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520
               +   +R G +   N   S+  G P   I+ + +  F+  +  + +   L ++   D
Sbjct: 8   LPSFVWRADRAGAVRYVNPWASRYLGLPAPHIVGRNWHEFVHPDDINPVLDALRQM--HD 65

Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKK 576
                         +       + ++     S           DI   +        +++
Sbjct: 66  GNLLRNVDVRLLRGDGVFHWHTLHLQAQRDESGRIGDTVGVATDIHHCRHAWAMYEASER 125

Query: 577 IAEKE 581
             +  
Sbjct: 126 RLKAA 130


>gi|325108197|ref|YP_004269265.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
           5305]
 gi|324968465|gb|ADY59243.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
           5305]
          Length = 1434

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 127/730 (17%), Positives = 253/730 (34%), Gaps = 38/730 (5%)

Query: 101 ELPKTIGNYAFKMIG-MRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYV 159
              +  G    + I              D    +  +          T L       +  
Sbjct: 226 RASEIFGVEPGRRIPYDEFLAWIHPEDRDRVLAMHQMCLTTFEPGDLTFLVQTPNGAIRH 285

Query: 160 PIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEK 219
            + L A  I ++  E    +  GI+          A     +  +    E      +   
Sbjct: 286 -VQLKAGVIRNQAGEAE--QCIGILKDVTDRMLQDAALHESEANYRTTFEQVAVGVANVS 342

Query: 220 EKYDIFSQQS--PPPHLRMKNKVSSLTEYYAHKDDVLKTEK---YPLLTSEESSLPEQED 274
                               +++  L        D L  +      +L  E  S   ++ 
Sbjct: 343 PDGMFVRVNKGLCDLLGYESDELLQLDFQQITHPDDLNADLTLVAQVLNGEIPSYRMEKR 402

Query: 275 FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP-- 332
           +   + +          +++       ++S           +         ++K  +   
Sbjct: 403 YIRKDGDVVWANLNVSMVRDREGAPKHFISVVESIQERKEAEAALQTYNNQIEKLSLVAS 462

Query: 333 ------FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
                     + G + + N +F  LT+Y   D +    G   LL  P    +      M 
Sbjct: 463 KTQHSVVITDARGRIEWVNEAFTRLTEYTLDDCLGKIPG--DLLQGPNTDPDTVNFIHMA 520

Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
            R +R+       +     + +    +        N   E       + +  D +  +  
Sbjct: 521 LRENRS---IDTEIINYSKSGDEY-WICLKIDPVFNDNGELTNFIATQVDVTDRKRAEET 576

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV--FLEQN 504
                 Q  ++L+A   GI     +G I   N    ++ GY  ++  R          + 
Sbjct: 577 AARSQKQFEALLKADILGIMTCRYDGRIEQANDEFLRIVGYTRDEFERGELDWRSLTPER 636

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH-DISE 563
                   + ++      +  EK      K+  ++ + + +  +  ++   L    D + 
Sbjct: 637 WLEKDQAAIEQLRKTGAARPWEKE--YRRKDGIVIPVYLGVTLIEDNTDLCLCFVLDATA 694

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            K+ +  L  A++ AE  S  KSDFLA +SHE+RTPL  +IG +E++ N       + R 
Sbjct: 695 QKRTEASLEGARRSAEAASKAKSDFLASMSHELRTPLNGVIGMTELLANTDL----DARQ 750

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            ++      SG  +L ++ND+LD SKIE+G++ L      L   + + ++++ L  + K 
Sbjct: 751 TQFVRACKSSGESLLALINDVLDFSKIEAGRLELDEHEFDLMSLLDDLMNVMGLRVSGKD 810

Query: 684 ILIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT----HTSNEEVI 738
           I +       +   +  D   ++Q+ +N++ NAI FT  G +I +            ++ 
Sbjct: 811 IQMLYRVDHPHTLLLRGDSHRLRQVLVNLIGNAIKFTERG-KISLRVEPLELTEDRAKLR 869

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
             V+DTG+G+    L++  K F Q+ +S      GTGLGL + K++V+A  G+  + S  
Sbjct: 870 FAVKDTGIGIPADRLDRLFKTFTQVDSSITRTFGGTGLGLCICKSLVEAMGGEMGVDSIQ 929

Query: 799 AKGTLIEIIF 808
             G+      
Sbjct: 930 GVGSEFYFTL 939



 Score =  101 bits (252), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 54/536 (10%), Positives = 148/536 (27%), Gaps = 50/536 (9%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN--TWYGK 146
           +   G    +++ L   +G  + +++ +    ++    ++ +  +   +      ++  +
Sbjct: 341 VSPDGMFVRVNKGLCDLLGYESDELLQLDFQQITHPDDLNADLTLVAQVLNGEIPSYRME 400

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR--LDKKF 204
                 +G    V  +L    +  R      F    +V   +   +  A  +      + 
Sbjct: 401 KRYIRKDGD--VVWANLNVSMVRDREGAPKHF--ISVVESIQERKEAEAALQTYNNQIEK 456

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK------DDVLKTEK 258
             L   K  HS V  +        +       +  +                 D      
Sbjct: 457 LSLVASKTQHSVVITDARGRIEWVNEAFTRLTEYTLDDCLGKIPGDLLQGPNTDPDTVNF 516

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH----RNHPSLSAY 314
             +   E  S+  +   ++ + ++Y        + N++ E   +++      +       
Sbjct: 517 IHMALRENRSIDTEIINYSKSGDEYWICLKIDPVFNDNGELTNFIATQVDVTDRKRAEET 576

Query: 315 FDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
               +      +    +        G +  AN  FL +  Y   +         +L    
Sbjct: 577 AARSQKQFEALLKADILGIMTCRYDGRIEQANDEFLRIVGYTRDEFERGELDWRSLTPER 636

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
            L  + A   +   R               +      + +        +     +     
Sbjct: 637 WLEKDQA--AIEQLRKTGAARPWEKE---YRRKDGIVIPVYLGVTLIEDNTDLCLCFVL- 690

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR--AVSKLFGYPVED 491
             +    +  +  +E       +  +A SD +A ++ E      N    +++L      D
Sbjct: 691 --DATAQKRTEASLEGARRSAEAASKAKSDFLASMSHELR-TPLNGVIGMTELLANTDLD 747

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
             +  F     +++   +   + ++L     +           +E    L  ++  L   
Sbjct: 748 ARQTQFVRA-CKSSGESLLALINDVLDFSKIEAGRLEL-----DEHEFDLMSLLDDLMNV 801

Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
               ++  DI              ++  +     +  L   SH +R  L  +IG +
Sbjct: 802 MGLRVSGKDI--------------QMLYRVDHPHTLLLRGDSHRLRQVLVNLIGNA 843


>gi|309790134|ref|ZP_07684707.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides
           DG6]
 gi|308227859|gb|EFO81514.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides
           DG6]
          Length = 1034

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 138/751 (18%), Positives = 265/751 (35%), Gaps = 55/751 (7%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNTWYGKT 147
           +A G L   S+   + +     +        V      +P     +              
Sbjct: 140 NAEGVLVPASQR-REYVVASYNEPFESTRGGVGFDFTSEPVRRAALEQARDSGEATASAP 198

Query: 148 TLWPIEGTNLYV---PIDLAALPIYS---RNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
           T   + G   ++   P+  +   I +   R    +G+   G+  +  +            
Sbjct: 199 TTLVVSGEPGFLIFWPVYRSGAAINTVALRRDNITGYV-IGMFRLRDLVETAVQA----- 252

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
            K   L          E             P     + +S                    
Sbjct: 253 SKLRDLDIYLFDEGLPEDAPPFYVHAAFSRPEALDTSNISLSELIKQAPYSSRIGMAGRN 312

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
                +  P  E       +          L   +       +  +    +      E  
Sbjct: 313 WRLIINPAPSYEASR--LDSIPWIALLIALLSTFAIAY----AMAHQQHAADQLRHSERR 366

Query: 322 TPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
               +DK    F +  + G + Y +P++  +  Y S   +  +      L   +      
Sbjct: 367 FRILIDKGGNAFAIIAADGTVRYTSPNYERILGYPSGSRLGRSTFE---LIHHEDQGEAQ 423

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
                L        +   R   +++       +        +  PE         +  D 
Sbjct: 424 RLFSELLSKPGESRSLQMR---VRYFNGAWHWIETTATNLID-EPEIGGVLANVRDINDY 479

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTV 499
           +  +  +     +L +IL+   DG  I++ +   L  N A   + GY   ++L       
Sbjct: 480 KQAELALRENERRLRTILQTAQDGFMILDLQLRFLEVNDAYCGMSGYTRAELLNGMTIFN 539

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM- 558
                    ++ +   I++  +       T    K+     + I +  +       +   
Sbjct: 540 VEAFEAYEQIHAHAHRIMTQGIDL---FETRHRRKDGSTFHVEISVHYIDSDGGVMVCFC 596

Query: 559 HDISEWKQEKNK------------------LSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
            DI++ K+ + +                  LS       +    K +FLA +SHE+RTPL
Sbjct: 597 RDITDRKRREAEIRHLNSELEQRVAERTADLSRTNAELNRALRTKDEFLATMSHELRTPL 656

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
             I+ FSE+++ +  GP+ N +      YI+ SG  +L ++ND+LD+SK+E+G+M +H E
Sbjct: 657 NGILSFSELLQEEISGPI-NEQQRRSLQYIESSGRHLLALINDILDLSKVEAGRMEIHSE 715

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720
             S+ E    ++  V+  AN K + +  S ++N+  I  D + +KQ+ +N+LSNA+ FTP
Sbjct: 716 IYSVVEICEASLLFVKELANRKGLQVGFSCSDNLAIIEVDAKRLKQMLINLLSNAVKFTP 775

Query: 721 SGGQIIISTTHTS-NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
            GGQ+++  T  +    +   V DTG+G+   ++E+  +PF Q+ +S   + EGTGLGL 
Sbjct: 776 DGGQVLLEVTTDATAGVIRFVVSDTGIGIKAEDMERLFRPFTQLDSSLSRQHEGTGLGLA 835

Query: 780 LAKAMVDANMGKFYIFS-TPAKGTLIEIIFP 809
           L + + D   G   + S    +G    +  P
Sbjct: 836 LVRRLADLMGGSIGVESDGEGQGCRFILALP 866



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/225 (12%), Positives = 62/225 (27%), Gaps = 17/225 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMI-GMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
           +D      E+++      G    +++ GM + +V      +  +     +  Q     +T
Sbjct: 507 LDLQLRFLEVNDAYCGMSGYTRAELLNGMTIFNVEAFEAYEQIHAHAHRIMTQGIDLFET 566

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                +G+  +V I +  +     +                      A  + L+ +    
Sbjct: 567 RHRRKDGSTFHVEISVHYI---DSDGGVM----VCFCRDITDRKRREAEIRHLNSELEQ- 618

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
                     E+      +       LR K++  +   +              LL  EE 
Sbjct: 619 -------RVAERTADLSRTNAELNRALRTKDEFLATMSHELRTPLNGILSFSELLQ-EEI 670

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
           S P  E          +  ++   L N+  +  +  + R      
Sbjct: 671 SGPINEQQRRSLQYIESSGRHLLALINDILDLSKVEAGRMEIHSE 715


>gi|298248980|ref|ZP_06972784.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297546984|gb|EFH80851.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 981

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 97/737 (13%), Positives = 228/737 (30%), Gaps = 39/737 (5%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQNTW 143
             W     GY    ++      G    +  G                 +    ++    +
Sbjct: 267 LVWTGQPDGYRDSYNQRWRDYTGLSTEEAQGEGWVQCLHPEDRQRVLSMWQRAVQTGGVY 326

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +        T  Y      A+P+     +    + FG               K  ++ 
Sbjct: 327 ETE-LRLRQGTTGAYRWFLARAMPVRDEGGQII--KWFGTSTDIEKQKRAEQQLKESEEN 383

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSSLTE---YYAHKDDVLKTEK 258
              L E         +                      +         +    + +   +
Sbjct: 384 LRVLAETVPQLVWTTRPDGRFDYCNQRYCEYTHAAFEHLQGYGWRQFMHPEDAERVVVLR 443

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
              L + E    E    ++              +++++ +  ++             ++ 
Sbjct: 444 QQTLQTGEPYEIEYRLRNSQTGTYRWFLARAMPVRDDTGQIIKWFGTCTDIDEQKQAEQK 503

Query: 319 ENLTPE----TVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
              + E      +  P   +     G   Y N  +   T    V+ ++           P
Sbjct: 504 IKESEENWRVLAETVPQLVWTTRSDGQHEYVNQRWCDYTGVT-VEHMQSDRWAPLPFIHP 562

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
              +                     RL   Q                 +   + +   G 
Sbjct: 563 DDREGTRT-LWQHALETGAMYEHEERLRNSQT--GEYRWFLTRGAPVRDDTGQIVKWFGT 619

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
             +  + +  +  +     +   ++ ++  GI +   +  ++  N A  ++ GY +ED+ 
Sbjct: 620 VTDIDEQKRMEEALRQSQERASVLMNSSIIGIFVA-EDERVVDANDAFLRMTGYTLEDLR 678

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS- 552
            +  +         +             +  +        K+   L + +    L     
Sbjct: 679 ERRMSWRHMTPPEYMARTLQAHQEFALHQSIIPYEKEYVCKDGSRLPVLVGAVVLQHHPF 738

Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
                + D S  K+ + +              K DF++  SHE+R PL A+   ++ +  
Sbjct: 739 QAIAFVLDNSARKELEQR--------------KDDFISMASHELRNPLAAVKMQTQ-LVQ 783

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
           +R     +       + ++ S   +  ++ +LLD+SKI++G++    E V LD  + E  
Sbjct: 784 KRLERQSHHEAATALSRVEGSVKQLERLIGELLDVSKIQAGRLEYQQEMVDLDALLHEVA 843

Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
             +Q       I++R +   ++   + D   + Q+  N++SNAI ++P    + +  + +
Sbjct: 844 DTMQQIHTTHTIVVRGTAPCSL---VGDKDRLGQVFTNLISNAIKYSPGAETVEMDLSTS 900

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
           +   V +RVRD G+G+   + +K    F ++ + +Q    G G+GL +   +V ++ G  
Sbjct: 901 AE-TVTIRVRDHGLGIPREQRDKIFDRFYRVTDPKQRAIPGLGMGLYIVAEIVKSHGGTI 959

Query: 793 YIFSTPAKGTLIEIIFP 809
            + S    G+   +  P
Sbjct: 960 TVESQVGTGSTFTVTLP 976



 Score =  128 bits (321), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 43/544 (7%), Positives = 123/544 (22%), Gaps = 37/544 (6%)

Query: 57  QNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGM 116
           +  + ++  +           P      F   +D    +   +      +G    ++   
Sbjct: 5   KPTKRLTPASSETLLTLLETLPGAL---FV--VDDAATIVYANASAQSILGATREEVCAQ 59

Query: 117 RLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFS 176
            L   +  L            KR           P+  T  ++ + L++           
Sbjct: 60  PLWRCAPQLVSTSLYQAVQKTKRTRAPSEVEYFSPV--TQTWLHVQLSST---------V 108

Query: 177 GFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM 236
           G        +         + +      + L  +  G   +  E   +   + P    ++
Sbjct: 109 GGLLLQFHEMGAPAPRQETVPQSEHLYLNGLDGLYSGIVVLTPEGIVLGINEVPLADAQI 168

Query: 237 KNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE------DFHTINLNQYTKKQYFG 290
           + +          +           L +  +     E        H         +    
Sbjct: 169 RREEVIGQPLAQTRWWSCSPPSQEQLRAAIARASMGETVCFETVVHPREGMDRHLEVTIT 228

Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY-ANPSFL 349
              +        +      +     +         +D  P   +           N  + 
Sbjct: 229 PHMDVEHHIEYLVLAGIDITARKRAEAE---IHALIDAIPQLVWTGQPDGYRDSYNQRWR 285

Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
             T   + +  +  G +  L           +                 RL         
Sbjct: 286 DYTGLSTEEA-QGEGWVQCLHPED---RQRVLSMWQRAVQTGGVYETELRLRQGTT--GA 339

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469
                       ++  + +   G   +    +  +++++     L  + E     +    
Sbjct: 340 YRWFLARAMPVRDEGGQIIKWFGTSTDIEKQKRAEQQLKESEENLRVLAETVPQLVWTTR 399

Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
            +G     N+   +      E +    +  F+       +     + L       +E   
Sbjct: 400 PDGRFDYCNQRYCEYTHAAFEHLQGYGWRQFMHPEDAERVVVLRQQTLQTGEPYEIEYRL 459

Query: 530 LGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
              ++             +   +     +  T  DI E KQ + K+  +++     +   
Sbjct: 460 RN-SQTGTYRWFLARAMPVRDDTGQIIKWFGTCTDIDEQKQAEQKIKESEENWRVLAETV 518

Query: 586 SDFL 589
              +
Sbjct: 519 PQLV 522


>gi|126659637|ref|ZP_01730767.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110]
 gi|126619083|gb|EAZ89822.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110]
          Length = 1070

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 138/768 (17%), Positives = 270/768 (35%), Gaps = 65/768 (8%)

Query: 98  ISEELPKTIGNYAFKMIGM--RLCDVSDILHIDPNNHIG--DLLKRQNTWYGKTTLWPIE 153
            S    + +G    ++         +      +    I      K+ + +  +  L   +
Sbjct: 69  FSPRWKEMLGYGDQELPNHINTWKKLLHPQDTERVMKILADHFAKKTDHYSAEFRLKCQD 128

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH---EI 210
           G   Y  I      ++         R  G         D + L   L      L    + 
Sbjct: 129 GN--YKWILSRGKALWDATGNLV--RMAGSHTDISDRKDEQILLTSLIDCIPDLVFCKDS 184

Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL-TSEESSL 269
           K  +            +       +   ++    E    ++             +EE   
Sbjct: 185 KGVYKMCNNAFETFAGRDRKDIIGKSDFELFPPEEALGFREQDRFMMLQKQSHRNEEWIT 244

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
                   ++  +       G L      S +    +          E + L      + 
Sbjct: 245 YPNGKRRLVDTLKTPFCCPEGKLMGTIGISRDITDRKQKEEAIKKQAERDALLSNIARQL 304

Query: 330 -------PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
                   + F + S G     + S+++    +      +    +    +      N   
Sbjct: 305 IDQDLTTAVNFILESLGKFTKCDRSYIIRYFPEEKAWSMLHEWCNEYTPSTIHDSQNISL 364

Query: 383 PVM--------------LYRSDRTCIAASARLHTIQWNRENSLAMTFIPF----EKANQF 424
            V               + R +     A+A     Q +   +L +  +            
Sbjct: 365 DVFPWFSKQLIEGKSICINRLEDFPPEATAEKEAYQNSLSPNLLVVPMMAGGQTVGYLGI 424

Query: 425 PENMPQNGIEPEDVDTRI-------------NKRKMEIEVMQLCSILEATSDGIAIINRE 471
             N+ Q   + +    ++              +        +   IL+  ++ I  I+ +
Sbjct: 425 DTNLYQKWTKEDVNLLKLVGELMAIAEARAIAEEAQNESQARFAGILDNANEAIISIDEQ 484

Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ---NTPSVMNHYLTEILSLDLRQTLEKI 528
             I   N A  ++FGY  +++L +PF + +     +                 +    + 
Sbjct: 485 QKITLFNHAAEQIFGYISDEVLGQPFNLLIPPRFTDDHYQHIQTFQNTSETARQMGGRRP 544

Query: 529 TLGSTKEEKLL--SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
             G  K+       + I   KL   + ++  + DI+E KQ +  L  AK+ A+  +  KS
Sbjct: 545 VFGQRKDGTEFLAEVSISKIKLRGKTIFTAIIRDITERKQAEEALKRAKEQADAANRAKS 604

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
           +FLA +SHE+RTPL AI+GF++V++           + +  + I RSG  +L+++ND+L+
Sbjct: 605 EFLASMSHELRTPLNAILGFTQVMQRDHS---LKEEHKQNLDIIGRSGEHLLELINDILE 661

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVK 705
           ++KIE+G+  L+     L   +    S++ L A EK + +      ++P+ I  D   ++
Sbjct: 662 MTKIEAGRTTLNKTQFDLYRLLDNLESMLHLKAEEKNLQLLFEKNPDLPQYIETDEGKLR 721

Query: 706 QIALNILSNAIHFTPSGGQI-IISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPF 760
           Q+ +N+L NAI FT  GG I  I T+  S       +   V DTG G+   E+++  + F
Sbjct: 722 QVLINLLGNAIKFTQEGGVILRIKTSQQSPNNQAIILTFEVEDTGPGIAIEEVDQLFEAF 781

Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           GQ    +    EGTGLGLP+++  V+   G+  + S   +G+L     
Sbjct: 782 GQTETGRNSN-EGTGLGLPISRKFVELMGGEISVSSILGRGSLFTFTI 828



 Score = 91.6 bits (226), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 33/285 (11%), Positives = 77/285 (27%), Gaps = 22/285 (7%)

Query: 315 FDEGENLTPETVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
             E E      V       + ++      + +P +  +  Y   +          LL   
Sbjct: 39  LRENEERWQLVVQGTNEGIWDWNLKTDEMFFSPRWKEMLGYGDQELPNHINTWKKLLHPQ 98

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
                  I      +      A       ++    N   +        +     +   G 
Sbjct: 99  DTERVMKILADHFAKKTDHYSA----EFRLKCQDGNYKWILSRGKALWDATGNLVRMAGS 154

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
             +  D +        E + L S+++   D +   + +G+    N A     G   +DI+
Sbjct: 155 HTDISDRK-------DEQILLTSLIDCIPDLVFCKDSKGVYKMCNNAFETFAGRDRKDII 207

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS- 552
            K                    ++        E+       + +L+         P    
Sbjct: 208 GKSDFELFPPEEALGFREQDRFMMLQKQSHRNEEWITYPNGKRRLVDTLKTPFCCPEGKL 267

Query: 553 -CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
                   DI++ KQ++         A K+ + +   L+ ++ ++
Sbjct: 268 MGTIGISRDITDRKQKEE--------AIKKQAERDALLSNIARQL 304



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/250 (9%), Positives = 67/250 (26%), Gaps = 25/250 (10%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN----------NHIGDLLK 138
           ID    +   +    +  G  + +++G     +      D +          +     + 
Sbjct: 481 IDEQQKITLFNHAAEQIFGYISDEVLGQPFNLLIPPRFTDDHYQHIQTFQNTSETARQMG 540

Query: 139 RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
            +   +G+      +GT     + ++ + +  +           I+             K
Sbjct: 541 GRRPVFGQ----RKDGTEFLAEVSISKIKLRGKT------IFTAIIRDITERKQAEEALK 590

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
           R  ++    +  K    +    +       +     ++  +  SL E +    D++    
Sbjct: 591 RAKEQADAANRAKSEFLASMSHELRT-PLNAILGFTQVMQRDHSLKEEHKQNLDIIGRSG 649

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
             LL      + +  +   I   + T  +    L          L  +          E 
Sbjct: 650 EHLL----ELINDILEMTKIEAGRTTLNKTQFDLYRLLDNLESMLHLKAEEKNLQLLFEK 705

Query: 319 ENLTPETVDK 328
               P+ ++ 
Sbjct: 706 NPDLPQYIET 715



 Score = 48.1 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/151 (13%), Positives = 50/151 (33%), Gaps = 10/151 (6%)

Query: 430 QNGIEPEDVDTRIN---KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
           Q  I     D ++    +  +     +   +++ T++GI   N +   +  +    ++ G
Sbjct: 19  QAEIIRLKADQKVALTMQETLRENEERWQLVVQGTNEGIWDWNLKTDEMFFSPRWKEMLG 78

Query: 487 YPVEDILRK--PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
           Y  +++      +   L       +   L +  +               ++     +   
Sbjct: 79  YGDQELPNHINTWKKLLHPQDTERVMKILADHFAKKTDH-YSAEFRLKCQDGNYKWILSR 137

Query: 545 IKKLPFSSCYSLTM----HDISEWKQEKNKL 571
            K L  ++   + M     DIS+ K E+  L
Sbjct: 138 GKALWDATGNLVRMAGSHTDISDRKDEQILL 168


>gi|298530358|ref|ZP_07017760.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509732|gb|EFI33636.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 1150

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 134/839 (15%), Positives = 286/839 (34%), Gaps = 56/839 (6%)

Query: 7   ISNPEDILTSNCKGNTQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTN 66
           +S PE     + +    D S    D  F++  +   +            +      S   
Sbjct: 110 MSAPETSARPDGEDPDADESSPADDRSFQSALAFL-SEMAAMLGDQGLAELRLRRTSRKL 168

Query: 67  YLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH 126
              SE TF         R  +  D +      ++     +G    ++ G    D+     
Sbjct: 169 E-KSEATFKSLVEHLPQR-IFIKDLNSNYVTCNQIYAGDVGLTPEEIPGKTDFDLHPEEL 226

Query: 127 IDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHV 186
                     +  Q+        +    ++L++      +P    +    G  G  I   
Sbjct: 227 ARKYRRDDHRVITQDAPLELEESYSRGDSSLWISTT--KVPYRDESGNIIGVLG--IFQD 282

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSL 243
                + +A  K  ++   ++ + +            +           +   ++ +  +
Sbjct: 283 ITRSKEQQAELKYKEQLLKNIVDTQSELICRFLPDGTLTYVNPAYCRYFNRDEQDLLGRV 342

Query: 244 TEYYAHKDDVLKTEK-YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302
                H DD+   ++ +  L  +   +  Q      +     ++       +   + FEY
Sbjct: 343 FLPMVHDDDLQYVQECFSSLGPDRPEITYQHRIRLPDGQIRWQEWTDRAFIDEQGKVFEY 402

Query: 303 LSHRNHPSLSAYF----DEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSV 357
            +     +          E E      V+              L Y N ++  +      
Sbjct: 403 QAVGRDITEHRQAVNSLQESEQRYRGLVESQNDLIVRVDPDNRLTYVNDTYCKVFGRTRE 462

Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
           + +      + L+    + D            D       A++       +    + +  
Sbjct: 463 ELLG--SSFTPLVHEEDIEDTLKAME------DLKTPPYRAQMQQRAMTVDGWRWIHWED 514

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI----AIINREGI 473
               +Q    +   G+  +  D +  +  ++        I E +  G+     +++  G 
Sbjct: 515 SALLDQQGRIVEIQGVGRDITDLKKAQEDLQQSEKNFRLIFENSPVGMATHEILLDEHGR 574

Query: 474 -----ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528
                 L  N A     G   +++  +  T  L     S       ++         ++ 
Sbjct: 575 PVDYIFLDANPAFETHTGLSAQEVTGRRATEVLPGIENSSFIDTYAQVAFSGKTANFQEF 634

Query: 529 TLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
           +    +        +I         ++ +  DI+E ++ + +L  AK+ AE  S  KS F
Sbjct: 635 SPPLNRH------FMISAYQMAHGQFAASFIDITELEKTRRELVRAKEAAEAASQAKSTF 688

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
           LA +SHEIRTP+ AI+GF+++++        + R   +   I R+ + +L I+ND+LD+S
Sbjct: 689 LANMSHEIRTPMNAILGFAQILERDSTLGPDHAR---HVQSISRNADHLLSILNDILDMS 745

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQI 707
           +IE+G++  +    +L +   +   +    A  K + +      ++PR   AD   ++QI
Sbjct: 746 RIEAGQIEHNPRDFNLHQTFEDLELMFIPRAVSKGLELTFEKNGSLPRAGHADPGMLRQI 805

Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEEVI----------LRVRDTGVGMTNYELEKAM 757
            +N+L NA  FT  G ++    +   N E            ++V+D+G G+   E+++  
Sbjct: 806 MVNLLGNACKFTSQG-EVTFRISAEKNSEACGTGQGGFTLNVQVQDSGPGIDPEEMDRIF 864

Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
            PF Q    +     GTGLGL +++       G   +     KG+L  +  P+   + P
Sbjct: 865 DPFHQ--GGRDPGEGGTGLGLHISRKYARIMGGDLSVSPHTEKGSLFCLQVPVQQATRP 921


>gi|332707718|ref|ZP_08427745.1| PAS domain S-box protein [Lyngbya majuscula 3L]
 gi|332353421|gb|EGJ32934.1| PAS domain S-box protein [Lyngbya majuscula 3L]
          Length = 930

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 116/753 (15%), Positives = 270/753 (35%), Gaps = 46/753 (6%)

Query: 96  KEISEELPKTIGNYAFKMI--GMRLCDVSDILHIDPNNH-IGDLLKRQNTWYGKTTLWPI 152
                 + + +G Y  ++        ++     ++   H I  ++  +   + +  +   
Sbjct: 194 LIWGHNIEQVLGYYPGELTNTRQGWDELIYPDDLERYRHTIERVIVTKEPIHLEYRIRKK 253

Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE--- 209
           +GT  Y+ ++         +   +  R  G++             +  +K+F    +   
Sbjct: 254 DGT--YITVENKGQFYLDSSGNLN--RVLGLIVDITERKQAEEALRLSEKRFRLAVDNFP 309

Query: 210 -------IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
                   ++    + ++   +      P       ++        +   + K  +    
Sbjct: 310 GTFMIYDAQRRLQFINQQGVKLTGVSDSPLLGHTDEEIYPPVFKDIYVKLLQKAVETRTP 369

Query: 263 TSEESSLPEQEDFHTINLNQYTK--------KQYFGTLQNNSKESFEYLSHRN-----HP 309
             EE +L   E      L  Y           Q  G +Q+ ++     +  R        
Sbjct: 370 QVEELTLTLPEVGELTVLATYIPLLNEQGNIYQVIGIIQDTTQRKQAEVELRQAYQQLRL 429

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLST 368
           + +A  DE +       D+ PI   +          N +F  + +Y   + + + G    
Sbjct: 430 NTAAALDEKDAQFGRVFDEAPIGMSLSDLDYQFIQVNRAFYEMLEYTKSELMALNG---- 485

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
            L      D    KP +         +    +  +    +++L          +Q  E +
Sbjct: 486 -LAITHPEDLEKAKPYIKQVIQGEIDSFKLEIRYL-KKNQDTLWGNLTMMAMRDQAGEIL 543

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
               +  +  + +  +  +     +  +I+E  ++ I  +  +G +   N A  + FG  
Sbjct: 544 CILSMVEDITERKQAEEAVRHSEERFRAIIEDQTELICRLKLDGTLTFVNDAYCRYFGKD 603

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
             +++ + F   +      ++      +   +   T E   L  + E +           
Sbjct: 604 RSELVGQVFLPKMPPEDEDIVTRNFRSLSVENPINTYEHRVLLDSGEIRWQQWSDRAMFD 663

Query: 549 PFSSCY--SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
                        DI+E KQ +  +  A    ++    +S F++ VSHE RTPLT I   
Sbjct: 664 EHGHFIECQAVGRDITELKQAEADIRKALAKEKELGQLRSGFVSLVSHEFRTPLTTIQSS 723

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
           +++++      L   + +++ + I  +   +  +++D+L I K ++GK+    EP+ L  
Sbjct: 724 AQMLQR-YEQKLSAEKKLKHHDKIQHAVLRMTQLLDDVLTIGKADAGKLKFEPEPMDLVA 782

Query: 667 AVSEAISLVQLYAN-EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725
              + +  +++       ++  +    +   +L D R +  +  N+L NAI ++P GG I
Sbjct: 783 LCQDILENIKINLGFNHNLIFLSH--GSCQDVLIDERLLSHVVNNLLLNAIKYSPEGGTI 840

Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
                  S+   +++V+D G+G+   +  +  + F +   S      GTGLGL + K  +
Sbjct: 841 KFELNCNSS-TAVIQVQDQGIGIPKKDQYQLFESFERA--SNVGSIPGTGLGLAIVKKCL 897

Query: 786 DANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
           D + G   + S    GT   +  PL+  ++P++
Sbjct: 898 DLHEGTIAVNSEVGVGTTFTVTLPLHFATNPNN 930



 Score = 97.0 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 47/420 (11%), Positives = 111/420 (26%), Gaps = 46/420 (10%)

Query: 70  SENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP 129
           SE  F          F    DA   L+ I+++  K  G     ++G    ++   +  D 
Sbjct: 297 SEKRFRLAVDNFPGTFM-IYDAQRRLQFINQQGVKLTGVSDSPLLGHTDEEIYPPVFKDI 355

Query: 130 NNH-IGDLLKRQNT-WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187
               +   ++ +       T   P  G    + +    +P+ +       ++  GI+   
Sbjct: 356 YVKLLQKAVETRTPQVEELTLTLPEVGE---LTVLATYIPLLNEQGNI--YQVIGIIQDT 410

Query: 188 RVDNDPR---------------ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP-- 230
                                 A     D +F  + +      S+    Y          
Sbjct: 411 TQRKQAEVELRQAYQQLRLNTAAALDEKDAQFGRVFDEAPIGMSLSDLDYQFIQVNRAFY 470

Query: 231 PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL---TSEESSLPEQEDFHTINLNQYTKKQ 287
                 K+++ +L        + L+  K  +      E  S   +  +   N +      
Sbjct: 471 EMLEYTKSELMALNGLAITHPEDLEKAKPYIKQVIQGEIDSFKLEIRYLKKNQDTLWGNL 530

Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC--PIPFFVYS---HGNLF 342
               +++ + E    LS     +     +E    + E            +      G L 
Sbjct: 531 TMMAMRDQAGEILCILSMVEDITERKQAEEAVRHSEERFRAIIEDQTELICRLKLDGTLT 590

Query: 343 YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT 402
           + N ++         + +            PK+   +       +RS       +   H 
Sbjct: 591 FVNDAYCRYFGKDRSELVGQVFL-------PKMPPEDEDIVTRNFRSLSVENPINTYEHR 643

Query: 403 IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR----KMEIEVM--QLCS 456
           +  +        +      ++    +    +  +  + +  +      +  E    QL S
Sbjct: 644 VLLDSGEIRWQQWSDRAMFDEHGHFIECQAVGRDITELKQAEADIRKALAKEKELGQLRS 703



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/285 (6%), Positives = 78/285 (27%), Gaps = 13/285 (4%)

Query: 46  HDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKT 105
            +   +  +      + +  +  D++   VFD  P  +      D      +++    + 
Sbjct: 416 AEVELRQAYQQLRLNTAAALDEKDAQFGRVFDEAPIGMSL---SDLDYQFIQVNRAFYEM 472

Query: 106 IGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQ-NTWYGKTTLWPIEGTNLYVPIDL 163
           +     +++ +    ++    ++     I  +++ + +++  +          L+  + +
Sbjct: 473 LEYTKSELMALNGLAITHPEDLEKAKPYIKQVIQGEIDSFKLEIRYLKKNQDTLWGNLTM 532

Query: 164 AALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYD 223
             + +  +  E        +V             +  +++F  + E +       K    
Sbjct: 533 --MAMRDQAGEI--LCILSMVEDITERKQAEEAVRHSEERFRAIIEDQTELICRLKLDGT 588

Query: 224 IFSQQSP----PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTIN 279
           +              R +            +D+ + T  +  L+ E      +      +
Sbjct: 589 LTFVNDAYCRYFGKDRSELVGQVFLPKMPPEDEDIVTRNFRSLSVENPINTYEHRVLLDS 648

Query: 280 LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
                ++     + +      E  +     +     +        
Sbjct: 649 GEIRWQQWSDRAMFDEHGHFIECQAVGRDITELKQAEADIRKALA 693



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/135 (14%), Positives = 42/135 (31%), Gaps = 5/135 (3%)

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
           +       +  +   E E   L  +   + D +    + G     N    K+ G+    +
Sbjct: 1   MNTTQSHIKSTETMAEAESA-LKILFSLSLDLLCTFGQNGYFQQLNPIWEKVLGWTCSQL 59

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
             +P+  ++      V  + L +       + +E       K+  L  L   I +     
Sbjct: 60  RSRPWIEWIYPEDREVTLNALRDC---GQGKLVEYRNRIYHKDGSLRWLAWRISQDE-QG 115

Query: 553 CYSLTMHDISEWKQE 567
            +     DI+  K+ 
Sbjct: 116 LFYAVAKDITSIKEL 130


>gi|282899667|ref|ZP_06307631.1| Multi-component Transcriptional regulator, Winged helix family
            [Cylindrospermopsis raciborskii CS-505]
 gi|281195546|gb|EFA70479.1| Multi-component Transcriptional regulator, Winged helix family
            [Cylindrospermopsis raciborskii CS-505]
          Length = 1317

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 109/529 (20%), Positives = 213/529 (40%), Gaps = 58/529 (10%)

Query: 322  TPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
                V+  P    + S  +L + N + + L +  SV+++     L      P+  +    
Sbjct: 522  YHNLVEVYPEAILIVSQDDLVFVNSAAVRLLRVNSVEELLGKKFLE--FVHPQHREEIEE 579

Query: 382  --------------KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
                            V   ++D   I        + +  + +  +      +  Q    
Sbjct: 580  NLKSLKTSQTLIPLHEVKFLQADGQIIYVEMVGAFLNYQNQPAAQIVARDITRRKQTELA 639

Query: 428  MPQNGIEPEDV--------------------DTRINKRKMEIEVMQLCSILEATSDGIAI 467
            + +   E E                      + +  +  + I   +  +IL    D I  
Sbjct: 640  LHKTKDELELRVNERTAELINVNRQLQSQLDEQKRTQDALRISENRFEAILSIADDAIIS 699

Query: 468  INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI---LSLDLRQT 524
            I+    I   N+   K+FGY   ++L +   + L         +++ +     +   R  
Sbjct: 700  IDSNQQITLFNQGAEKIFGYSAGEVLGQKLDLLLPTRFAQEHRNHVYKFGKSSAHARRMG 759

Query: 525  LEKITLGSTKEEKLLSLRIIIKKLP--FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES 582
              +   G  K+         I KL     S Y++ + DI+E KQ +              
Sbjct: 760  ERQEIFGCRKDGSEFPAEASISKLDLGQESVYTVILRDITERKQVE-------------- 805

Query: 583  SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
              K +F++ VSHE+RTPLT+I G   ++ +       + +          S   ++ ++N
Sbjct: 806  KMKDEFVSVVSHELRTPLTSIHGSLGMLTSGLLSS-TSEQGKRLLQIATDSTERLVRLIN 864

Query: 643  DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADL 701
            D+LDI +IESGK+ +  E   L + ++ AI+++Q  A++  + +    +N+   ++ AD 
Sbjct: 865  DILDIERIESGKVKMERENCDLRDLINSAINIMQPLADKAGVSLSIHNSNSSSIQLWADP 924

Query: 702  RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761
              + Q   N+ SNAI F+  G  + + T    + +V++ V+DTG G+   +LE   + F 
Sbjct: 925  DRIIQTLTNLFSNAIKFSEPGSTVYLMTELQKD-QVLVTVQDTGRGIPEDKLESIFERFQ 983

Query: 762  QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            Q+ +S     +GTGLGL + K++V  + GK ++ S   +G+      P+
Sbjct: 984  QVDSSDSRNHDGTGLGLAICKSIVQQHGGKIWVKSILGEGSSFYFTLPI 1032


>gi|320353300|ref|YP_004194639.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
           2032]
 gi|320121802|gb|ADW17348.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
           2032]
          Length = 1282

 Score =  392 bits (1008), Expect = e-106,   Method: Composition-based stats.
 Identities = 131/803 (16%), Positives = 251/803 (31%), Gaps = 101/803 (12%)

Query: 91  AHGYLKEISEE--LPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ-----NTW 143
                   S        +   A  ++      +S          I  LL ++        
Sbjct: 223 PEQRWLY-SPATIHDDYLVEDANAVLPDSPAPLSAT-----AKAINALLGKRKDVHQAMH 276

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGF------------------------- 178
            G+     +          ++ LP++      SG+                         
Sbjct: 277 AGQPLTLAVVLDA--TTHTVSLLPLHDVTGRLSGYLLTYAPDPIIGKFQQEFYILLLYTI 334

Query: 179 ----RGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL 234
                 F ++   R  +      +R     ++         + +     +          
Sbjct: 335 AVCCLVFALLWRLRRRSQALDEERRNLSAMNNALAEGIYMQNRDGVITRVNPAACQLLGY 394

Query: 235 RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES------SLPEQEDFHTINLNQYTKKQY 288
                +  +     H+               ++          +E F   N      +  
Sbjct: 395 DADELLGQVAHDLFHRHGGNGAVPKEACPFFQTVHHSGQGYDGEEYFLCKNGELLLMEIA 454

Query: 289 FGTLQNNSKESFEYLSHRN------HPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNL 341
              +           + R+        +     +E        V++ P    +    G +
Sbjct: 455 SRPIFQQGTVVGSVTAFRDITERKHTEAALLQSEENGRKLMTAVEQSPASVVITDSDGTI 514

Query: 342 FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401
            Y N  F+  + +   + +         +    +      K +    +            
Sbjct: 515 EYVNQKFVQKSGFSVEEALGQNP----RILKSGMMPEEIYKELWQTITAGLEWKGELHNK 570

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
                               N+         I+ +  D    + ++        +++E+ 
Sbjct: 571 R---KDGTLYWEAVSISPIRNEQGTITHFIAIKEDITDRMRMEAELRENERIQRTLIESL 627

Query: 462 SDGIAIINREGIIL-STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520
             G+AII+ E  I+   N   + LFG   E I+ +    FL              +    
Sbjct: 628 PIGLAIIDGESRIIEEVNPLAASLFGADRETIIGRECHHFLCPQDELSCPIIDRGLA--- 684

Query: 521 LRQTLEKITLGSTKEEKLLSL--RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578
                    L    +   L +   + +  +           DI E KQ +  +  A +  
Sbjct: 685 ---VDNSDRLMLRADGTTLPVLKTVRMITIKGRRKLLECFVDIRERKQAEESVREANRQL 741

Query: 579 EK--------------ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           E                S  KS FLA +SHEIRTP+ AIIG + +    R     + +  
Sbjct: 742 EAAIVRAERLAREAESASRAKSQFLANMSHEIRTPMNAIIGMTHLAMQTR----DDDKRG 797

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
            + + +  S   +L ++ND+LD SK+E+G++ L   P S  + + E ++ +Q+ A EK +
Sbjct: 798 RFLDTVRHSAESLLGLLNDILDFSKMEAGQLKLSTAPFSPRQLLEEVMATLQMPAGEKGL 857

Query: 685 LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE------V 737
            +    A N+P  ++ D   ++QI LN++ NAI FT +G  I +  T            +
Sbjct: 858 RLAMDIAPNLPPCLVGDDLRLRQILLNLVGNAIKFTAAGS-ITLRITQEQPSSGGSEPLI 916

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
              V DTG+G+   +       F Q  NS   +  GTGLGL + K +V    GK ++ S 
Sbjct: 917 HFTVIDTGIGIAEEKRALIFNSFEQADNSYVRQYGGTGLGLSICKQLVTLMGGKIWVESR 976

Query: 798 PAKGTLIEII--FPLYDTSHPHD 818
             +G+   ++   P+ D   P D
Sbjct: 977 INQGSAFHVLVPLPVCDQPLPAD 999



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/359 (10%), Positives = 99/359 (27%), Gaps = 10/359 (2%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147
            D+ G ++ ++++  +  G    + +G     +   +  +     +   +     W G+ 
Sbjct: 508 TDSDGTIEYVNQKFVQKSGFSVEEALGQNPRILKSGMMPEEIYKELWQTITAGLEWKGEL 567

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                +GT  +  + ++  PI +     + F    I           A  +  ++    L
Sbjct: 568 HNKRKDGTLYWEAVSIS--PIRNEQGTITHF--IAIKEDITDRMRMEAELRENERIQRTL 623

Query: 208 HEIKKGHSSVEKEKYDIFSQQSP-PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
            E      ++   +  I  + +P    L   ++ + +     H          P++    
Sbjct: 624 IESLPIGLAIIDGESRIIEEVNPLAASLFGADRETIIGRECHHFLCPQDELSCPIIDRGL 683

Query: 267 SSLPEQEDFHTINLNQYTKKQYFG--TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
           +           +       +     T++   K    ++  R          E       
Sbjct: 684 AVDNSDRLMLRADGTTLPVLKTVRMITIKGRRKLLECFVDIRERKQAEESVREANRQLEA 743

Query: 325 TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
            + +           +   A   FL    ++    +    G++ L    +  D       
Sbjct: 744 AIVRAER--LAREAESASRAKSQFLANMSHEIRTPMNAIIGMTHLAMQTRDDDKRGRFLD 801

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
            +  S  + +     +          L ++  PF       E M    +   +   R+ 
Sbjct: 802 TVRHSAESLLGLLNDILDFSKMEAGQLKLSTAPFSPRQLLEEVMATLQMPAGEKGLRLA 860


>gi|117924091|ref|YP_864708.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117607847|gb|ABK43302.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1101

 Score =  392 bits (1008), Expect = e-106,   Method: Composition-based stats.
 Identities = 110/515 (21%), Positives = 196/515 (38%), Gaps = 29/515 (5%)

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGL 366
                   ++   +  E V+K P    +    G + Y N SF  L  Y +   +      
Sbjct: 329 QERRRLRLNDRIRVLSEVVEKSPAAVMITDPKGAIIYINKSFETLFGYSAEQVLGNTP-- 386

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
              +    L+++     +    +     +      T           + I     N   E
Sbjct: 387 --RMLKSGLTEDFVYAELWQTITAGGVWSGEMVNRTAC---GQLCWTSCIVSGLINDQGE 441

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
                 +E +  + +  +  +     +L + +E +   I I N+EG I   N     + G
Sbjct: 442 MGYYVAVESDTTEAKQRELDL----HKLSTAVEQSPIAIVITNQEGAIEYVNPHFCNISG 497

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
           Y  +++L +   +       +     L   ++    +          K          I 
Sbjct: 498 YSAQEVLGENPRLLKSGEMAAAYYQELWSTITRG--EVWRGEFRNRRKNGSTYWESATIA 555

Query: 547 KLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
            +   +     Y     DIS  K  + +L   +   ++ S  KSDFLA +SHEIRTP+  
Sbjct: 556 PVRDINGQTSHYIALKEDISLRKSYEEQLIEERHKYQEASRVKSDFLATISHEIRTPMNT 615

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           I+G +  +K            ++    I  + + +L I+ND+LD S+ E+G + L   P+
Sbjct: 616 ILGMTGELKESHLSG----EQLKLLQSIQAAASNLLQIINDVLDFSRFEAGSIELFIAPL 671

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPS 721
            L + VSEA  +V     ++ I   T   + +P  I  D + ++Q+ +N+L NA  FT  
Sbjct: 672 LLRQVVSEAEQIVAFQIRKQGIRFLTYMDSTVPPFIFGDAQRLRQVLVNLLVNASKFTEQ 731

Query: 722 GGQIII------STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           G   ++          +  +E+  RV DTG+G++    +K    F Q   S   +  GTG
Sbjct: 732 GTIALLVHLQPGKAEASDQQELCFRVVDTGIGISEAHRDKLFHAFSQADGSITRQYGGTG 791

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           LGL ++K +V    G     S    G+      PL
Sbjct: 792 LGLSISKHLVGMMGGTIGFESCQGVGSTFWFTLPL 826



 Score = 61.2 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 28/235 (11%), Positives = 71/235 (30%), Gaps = 11/235 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID-PNNHIGDLLKRQNTWYGKT 147
            D  G +  I++      G  A +++G     +   L  D     +   +     W G+ 
Sbjct: 357 TDPKGAIIYINKSFETLFGYSAEQVLGNTPRMLKSGLTEDFVYAELWQTITAGGVWSGEM 416

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                 G   +    ++ L   +   E  G+     V V     + +     L K  + +
Sbjct: 417 VNRTACGQLCWTSCIVSGL--INDQGE-MGY----YVAVESDTTEAKQRELDLHKLSTAV 469

Query: 208 HEIKKGHSSVEKEKY-DIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
            +         +E   +  +            +V           ++       L ++  
Sbjct: 470 EQSPIAIVITNQEGAIEYVNPHFCNISGYSAQEVLGENPRLLKSGEMAAAYYQELWSTIT 529

Query: 267 SSLPEQEDF--HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
                + +F     N + Y +      +++ + ++  Y++ +   SL   ++E  
Sbjct: 530 RGEVWRGEFRNRRKNGSTYWESATIAPVRDINGQTSHYIALKEDISLRKSYEEQL 584


>gi|168698023|ref|ZP_02730300.1| multi-sensor hybrid histidine kinase [Gemmata obscuriglobus UQM
           2246]
          Length = 969

 Score =  392 bits (1007), Expect = e-106,   Method: Composition-based stats.
 Identities = 120/764 (15%), Positives = 234/764 (30%), Gaps = 69/764 (9%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D  G     +    + +G    +++G    D + +   D    +   L R     G+   
Sbjct: 99  DRDGRYLLFNAAAARLVGKTVAEVLGR---DDTALFDPDGARRVM-ALDRCIMESGRPLT 154

Query: 150 WPIEGTNLYVPIDLAA--LPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                T+  V     A   P        +G    GI              +    +F  +
Sbjct: 155 SEEVLTSAGVTRTYLATKAPYRDETGAVAGV--IGISRDVTDHKRDEESLRDSVWRFRSV 212

Query: 208 HEIKKGHSSVEKEKYDIFSQQSP---PPHLRMKNKVSSLTEYYAHKDDVLK--TEKYPLL 262
            E       +                   L       +      H DD  +       L 
Sbjct: 213 FEHAATGIGITDPDGRFLQCNPAYCATLGLTEAELREADLAQLIHPDDRAENMALLRQLS 272

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN-- 320
             E      +  F   +       ++   L++    +   ++     +     +      
Sbjct: 273 AGEIPGYEIENRFLHASGEPRWVHKWVTALRDAEGRTKCLMALVTDVTERRRSEAELRAS 332

Query: 321 ---------LTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
                    L    +D  P+   +    G +   NP+   +       D           
Sbjct: 333 EERSRKGAALLSAVMDALPVSVIIADPVGRIVRTNPASERIWGRAPTADSVDGYREYVGY 392

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
                      +  M         A +  +   +        +            E +  
Sbjct: 393 WPDTGRRIEPHEWPMSRAVLNGLTATAVGVTIERAGDRTRRRLELSAAPVIGDAGERLGG 452

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490
                +  +    +         L S+L+   D +  I+  G + S NRA  ++FG+   
Sbjct: 453 VVACLDVTERVAAE-------TLLTSVLDNVLDAVIGIDEGGTVRSFNRAAERIFGFTAA 505

Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL--EKITLGSTKEEKLLS--LRIIIK 546
           ++L +     + +   S  + YL   L+    + +   +  +   K  +     L +   
Sbjct: 506 EVLGRNVNTLMPEPDRSRHDGYLANYLTTGSAKVIGAGREVVARRKNGETFPADLAVSAF 565

Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
            L     ++  + DISE +Q +++  HA+K+              ++H+    LT I G+
Sbjct: 566 WLDDHRYFTGVVRDISERRQLEDQYRHAQKM-----EAVGRLAGGIAHDFNNLLTVINGY 620

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
           S+++ ++   P G+P + E    +  +G     +   LL  S+    K  L    ++L++
Sbjct: 621 SKIVLDEM--PDGDP-HRESVGMVRDAGKRAAVLTRQLLAFSR----KQVLQPTTLNLND 673

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726
            +     ++        + +    A     + AD   V+Q+ +N+  NA    P+GG++ 
Sbjct: 674 LLDGMSRML-AQLIGADVDLTVRGAPEPWPVRADAGQVEQVVMNLAVNARDAMPTGGRLT 732

Query: 727 IST--------------THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           I T                   E V L V DTG GM      +  +PF            
Sbjct: 733 IETGNVTLDTGYTAAHPEARPGEYVRLAVTDTGCGMDVVTKARIFEPFFTTKGEN----- 787

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           GTGLGL     +V  + G   ++S    GT  ++  P  D S P
Sbjct: 788 GTGLGLATVFGIVKQSGGHVEVYSELGVGTTFKVYLP-RDRSDP 830



 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 90/302 (29%), Gaps = 20/302 (6%)

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
                       +L     D      FV    G     N +   L      + +      
Sbjct: 70  ARREFRVAAHAAHLLRAVADGTTDAMFVKDRDGRYLLFNAAAARLVGKTVAEVLGRDD-- 127

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
           + L D      + A + + L R              +         +        ++   
Sbjct: 128 TALFD-----PDGARRVMALDRCIMESGRPLTSEEVLTSAGVTRTYLATKA-PYRDETGA 181

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
                GI  +  D + ++  +   V +  S+ E  + GI I + +G  L  N A     G
Sbjct: 182 VAGVIGISRDVTDHKRDEESLRDSVWRFRSVFEHAATGIGITDPDGRFLQCNPAYCATLG 241

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
               ++        +  +  +     L ++ + ++    E          +   +   + 
Sbjct: 242 LTEAELREADLAQLIHPDDRAENMALLRQLSAGEIPG-YEIENRFLHASGEPRWVHKWVT 300

Query: 547 KLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
            L  +          + D++E ++ + +L  +++ + K ++  S  +  +      P++ 
Sbjct: 301 ALRDAEGRTKCLMALVTDVTERRRSEAELRASEERSRKGAALLSAVMDAL------PVSV 354

Query: 603 II 604
           II
Sbjct: 355 II 356



 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 33/373 (8%), Positives = 82/373 (21%), Gaps = 36/373 (9%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            D  G   + +     T+G    ++    L  +        N  +   L        +  
Sbjct: 223 TDPDGRFLQCNPAYCATLGLTEAELREADLAQLIHPDDRAENMALLRQLSAGEIPGYEIE 282

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
              +  +     +      +              +V          A  +  +++     
Sbjct: 283 NRFLHASGEPRWVHKWVTALRDAEGRTKCLM--ALVTDVTERRRSEAELRASEERSRKGA 340

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
            +             I             ++        A   D  +        +    
Sbjct: 341 ALLSAVMDALPVSVIIADPVGRIVRTNPASERIWGRAPTADSVDGYREYVGYWPDTGRRI 400

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE----------- 317
            P +       LN  T      T++     +   L     P +    +            
Sbjct: 401 EPHEWPMSRAVLNGLTATAVGVTIERAGDRTRRRLELSAAPVIGDAGERLGGVVACLDVT 460

Query: 318 ----GENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                E L    +D        +   G +   N +   +  + + + +     ++TL+  
Sbjct: 461 ERVAAETLLTSVLDNVLDAVIGIDEGGTVRSFNRAAERIFGFTAAEVLGRN--VNTLMPE 518

Query: 373 PKLSDNN----------------AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
           P  S ++                A + V+  R +     A   +     +          
Sbjct: 519 PDRSRHDGYLANYLTTGSAKVIGAGREVVARRKNGETFPADLAVSAFWLDDHRYFTGVVR 578

Query: 417 PFEKANQFPENMP 429
              +  Q  +   
Sbjct: 579 DISERRQLEDQYR 591


>gi|322420797|ref|YP_004200020.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M18]
 gi|320127184|gb|ADW14744.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M18]
          Length = 933

 Score =  392 bits (1007), Expect = e-106,   Method: Composition-based stats.
 Identities = 112/637 (17%), Positives = 225/637 (35%), Gaps = 36/637 (5%)

Query: 190 DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS------PPPHLRMKNKVSSL 243
                   +R +++      I    S                      P         + 
Sbjct: 59  RRQSEGALRRSEEQLRISQRIAHIGSWDWDLASGRLDCSEELCRIFAIPFDGAPCSYDAF 118

Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303
                 ++            + + S   +         +    +     +N+S      +
Sbjct: 119 LSLLPEREREAVAAAVESALTGDDSFAVEYTLLCPGGGERVLLEVGEVFRNDSGTPLRVV 178

Query: 304 SHRNHPSLSAYFDEG---ENLTPETVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDD 359
           S  +  +     +     E      ++  P   F+     +    N SF      +  D 
Sbjct: 179 SVVHDITERKEAESALFFEKRYRGLIENLPQRIFLKDCNLVYLSCNSSFARELGLEPGDV 238

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
                    L   P           ++             +   +    +   ++     
Sbjct: 239 FGKTDY--DLFAPPLAKKRQEEDEKVMAAGT--------AVERDEQRERDGAWVSKALIP 288

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
             +         G+  +    +  + +++    +  +  E  + GI  I    I++  NR
Sbjct: 289 LKDDNGWVYALLGVLTDITFRKKAEEQLKESEERFRNTFEQAAVGICHIALSDILIRINR 348

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
               + GY  E++L       +     +     L+ +++ ++            K+  L+
Sbjct: 349 RFCDILGYTQEELLGSTLEQTIHPEDRAAEQGQLSRLVNREID-NYSIEIRQIRKDGSLV 407

Query: 540 SLRII----IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
            + +       +          + D++  K+E  +L   + + +  S  KS+FLA + HE
Sbjct: 408 WVNLTKSLVCGRKGEPKYLVGVIEDVTA-KREALELRRERDLVQAASRAKSEFLANMGHE 466

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           IRTP+ A++G S +       P    +   Y   I  +   +L+I+ND+LD SKIE+GK+
Sbjct: 467 IRTPMNAVMGLSRLALKSELVP----KQRGYLEKICSASRTLLNIINDILDFSKIEAGKV 522

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSN 714
            L    +SL E +     +  L A EK +  +   A  +PR +L D   + Q+  N++ N
Sbjct: 523 ELEKTELSLHEVLGNISDMHHLKAQEKGLDFKMRLAPELPRKLLGDPLRLTQVLNNLIGN 582

Query: 715 AIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           A+ FT  G +++++       E    V   V+DTG+G+T  ++EK   PF Q  +S   +
Sbjct: 583 ALKFTRRG-EVVVAVKPVEQGEGMVAVNFCVQDTGIGITPEQMEKIFTPFTQADSSTTRQ 641

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
             GTGLGL +++ +V+   G+  + S P KG+     
Sbjct: 642 YGGTGLGLSISRQLVELMGGELQVQSVPEKGSSFSFT 678



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 48/420 (11%), Positives = 111/420 (26%), Gaps = 52/420 (12%)

Query: 75  VFDPIPRTVRFTWNIDAHGYL------KEISEELPKTIGNYAFKMIGMRLCD------VS 122
           VF      +R  W   + G L        IS+ +            G   C        +
Sbjct: 46  VFVGGLHALRLKWRRQSEGALRRSEEQLRISQRIAHIGSWDWDLASGRLDCSEELCRIFA 105

Query: 123 DILHIDP--NNHIGDLLKRQ----------------NTWYGKTTLWPIEGTNLYVPIDLA 164
                 P   +    LL  +                +++  + TL    G    V +++ 
Sbjct: 106 IPFDGAPCSYDAFLSLLPEREREAVAAAVESALTGDDSFAVEYTLLCPGG-GERVLLEV- 163

Query: 165 ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDI 224
                + +      R   +VH      +  +     +K++  L E       ++      
Sbjct: 164 GEVFRNDSGTP--LRVVSVVHDITERKEAESA-LFFEKRYRGLIENLPQRIFLKDCNLVY 220

Query: 225 FSQQSPPP---HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLN 281
            S  S       L   +                K ++         +  E+++    +  
Sbjct: 221 LSCNSSFARELGLEPGDVFGKTDYDLFAPPLAKKRQEEDEKVMAAGTAVERDEQRERDGA 280

Query: 282 QYTKKQYFGTLQNNSKESFEYLSHRNHPS----LSAYFDEGENLTPETVDKCPIPFF-VY 336
                +    L++++   +  L      +          E E     T ++  +    + 
Sbjct: 281 --WVSKALIPLKDDNGWVYALLGVLTDITFRKKAEEQLKESEERFRNTFEQAAVGICHIA 338

Query: 337 SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA 396
               L   N  F  +  Y   + +      STL       D  A +  +    +R     
Sbjct: 339 LSDILIRINRRFCDILGYTQEELLG-----STLEQTIHPEDRAAEQGQLSRLVNREIDNY 393

Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
           S  +  I+ +  + + +         +  E     G+  +    +    ++  E   + +
Sbjct: 394 SIEIRQIRKDG-SLVWVNLTKSLVCGRKGEPKYLVGVIEDVTA-KREALELRRERDLVQA 451



 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/279 (10%), Positives = 71/279 (25%), Gaps = 19/279 (6%)

Query: 65  TNYLDSENTFVFDPIPR------TVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRL 118
           T   ++E+   F+   R        R  +  D +      +    + +G     + G   
Sbjct: 185 TERKEAESALFFEKRYRGLIENLPQR-IFLKDCNLVYLSCNSSFARELGLEPGDVFGKTD 243

Query: 119 CDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGF 178
            D+             + +    T   +      +G      +  A +P+   N     +
Sbjct: 244 YDLFAPPLAKKRQEEDEKVMAAGTAVERDEQRERDG----AWVSKALIPLKDDNGWV--Y 297

Query: 179 RGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK---GHSSVEKEKYDIFSQQSPPPHLR 235
              G++             K  +++F +  E       H ++      I  +        
Sbjct: 298 ALLGVLTDITFRKKAEEQLKESEERFRNTFEQAAVGICHIALSDILIRINRRFCDILGYT 357

Query: 236 MKNKVSSLTEYYAHKDDVLKTEKY--PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293
            +  + S  E   H +D    +     L+  E  +   +      + +          + 
Sbjct: 358 QEELLGSTLEQTIHPEDRAAEQGQLSRLVNREIDNYSIEIRQIRKDGSLVWVNLTKSLVC 417

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP 332
               E  +YL        +           + V      
Sbjct: 418 GRKGE-PKYLVGVIEDVTAKREALELRRERDLVQAASRA 455



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/136 (11%), Positives = 38/136 (27%), Gaps = 7/136 (5%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQ-NTWYGKTTLWPI 152
           L  I+      +G    +++G  L               +  L+ R+ + +  +      
Sbjct: 343 LIRINRRFCDILGYTQEELLGSTLEQTIHPEDRAAEQGQLSRLVNREIDNYSIEIRQIRK 402

Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212
           +G+   V ++L    +  R  E       G++       +   L +R           K 
Sbjct: 403 DGSL--VWVNLTKSLVCGRKGEPKYL--VGVIEDVTAKREALEL-RRERDLVQAASRAKS 457

Query: 213 GHSSVEKEKYDIFSQQ 228
              +    +       
Sbjct: 458 EFLANMGHEIRTPMNA 473


>gi|302037237|ref|YP_003797559.1| putative sensor histidine kinase [Candidatus Nitrospira defluvii]
 gi|300605301|emb|CBK41634.1| putative Sensor histidine kinase [Candidatus Nitrospira defluvii]
          Length = 1013

 Score =  392 bits (1007), Expect = e-106,   Method: Composition-based stats.
 Identities = 120/638 (18%), Positives = 224/638 (35%), Gaps = 28/638 (4%)

Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL--RMKNKVSSL 243
                       +  +++F    +     + ++ ++           H    +  +    
Sbjct: 82  DLAARTQAEESLRESEERFRSFMDHSPAIAWMKDDQGRHVYVNRVFEHRFQMVSGQWLGR 141

Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSLPEQ--EDFHTINLNQY---TKKQYFGTLQNNSKE 298
           T +    ++V +  +          LP++  E     +  Q    T K  F         
Sbjct: 142 TNFELFPEEVARRFQTHDQMILADGLPKEFVEVAPDPDGTQRDWWTFKFPFRGPAGRRYV 201

Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSV 357
               +   +   + A     E      +       + +    N    + +   +      
Sbjct: 202 GGVAIDITDRKRMEAALLVSEERLRLALGAAQAGIWDWDIRTNAVQWSDNVSTIFGLSRE 261

Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
             +        L+D   L     ++ +                H I W       +    
Sbjct: 262 TFVGTYEAYLALVDPQDLDR--LLQAIRQSIQANVEYQIE---HRILWPDGTVHWLACRG 316

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
               +     +   G   +    +    K+     QL +IL+ +   I + +REG  L  
Sbjct: 317 DVLRDADGTPVRMVGTVLDVTARKEMDLKLANSEAQLRAILDHSPALIFLKDREGRYLDV 376

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
           NR   + F    E IL K  T        +V       +L        E+          
Sbjct: 377 NRQFERAFNLSREAILGKTDTELFSPKQAAVFQTNDRLVLEAKRPLRFEETADYHDGPRT 436

Query: 538 L----LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
                  L    + L           DI++ K+ +  L+ A+  A + +  KS+FLA +S
Sbjct: 437 SIVFKFPLLDRDRMLYAVGG---VATDITDRKRAEEALALARDQAMEAARLKSEFLATMS 493

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HEIRTP+  +IG + ++      P       E A  +  SG+ +L I+ND+LD SKIE+G
Sbjct: 494 HEIRTPMNGVIGMTNLLLESALTP----EQRECAEVVRNSGDHLLMIINDILDFSKIEAG 549

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNIL 712
           ++ L          + + + L+   A +K + +      ++P  +  D   ++Q+ +N+L
Sbjct: 550 RLTLETIDFDFRGMIDDTLDLIAEQARQKGLDLVGLIDASVPSAVRGDPGRLRQVLINLL 609

Query: 713 SNAIHFTPSGGQI-IISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
            NAI FT  G  +  ++    +   V+LR  V DTG+G++     K  + F Q+  S   
Sbjct: 610 GNAIKFTDRGEVVLRMTVAQDAQSHVVLRGDVTDTGIGISPEGRNKLFQTFSQVDASTTR 669

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           R  GTGLGL + K + +   G+  + S P KG+     
Sbjct: 670 RYGGTGLGLAICKRLTELMQGEIGMESAPGKGSRFWFT 707



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/379 (7%), Positives = 80/379 (21%), Gaps = 25/379 (6%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYG 145
           W  D  G    ++          + + +G    ++           H   +L        
Sbjct: 112 WMKDDQGRHVYVNRVFEHRFQMVSGQWLGRTNFELFPEEVARRFQTHDQMILADGLPKEF 171

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
                  +GT           P          + G G+           A     +++  
Sbjct: 172 VEVAPDPDGTQRDWWT--FKFPFRGPAGRR--YVG-GVAIDITDRKRMEAALLVSEERLR 226

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSP----PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
                 +        + +               R     +            L      +
Sbjct: 227 LALGAAQAGIWDWDIRTNAVQWSDNVSTIFGLSRETFVGTYEAYLALVDPQDLDRLLQAI 286

Query: 262 LTSEESSL--PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE-- 317
             S ++++    +      +   +        L++        +      +     D   
Sbjct: 287 RQSIQANVEYQIEHRILWPDGTVHWLACRGDVLRDADGTPVRMVGTVLDVTARKEMDLKL 346

Query: 318 --GENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
              E      +D  P   F+    G     N  F           +      + L    +
Sbjct: 347 ANSEAQLRAILDHSPALIFLKDREGRYLDVNRQFERAFNLSREAILGKTD--TELFSPKQ 404

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
            +       ++L                   +   +  +   P    ++    +   G+ 
Sbjct: 405 AAVFQTNDRLVLEAK----RPLRFEETADYHDGPRTSIVFKFPLLDRDRMLYAVG--GVA 458

Query: 435 PEDVDTRINKRKMEIEVMQ 453
            +  D +  +  + +   Q
Sbjct: 459 TDITDRKRAEEALALARDQ 477



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/325 (12%), Positives = 87/325 (26%), Gaps = 22/325 (6%)

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
           T+   SL        +       +Q     + +       L             E E   
Sbjct: 46  TAGLISLLVSSVVVLLISRMRALEQTLADTRRDR-----ALDLAARTQAEESLRESEERF 100

Query: 323 PETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
              +D  P   ++    G   Y N  F    +  S   +        L            
Sbjct: 101 RSFMDHSPAIAWMKDDQGRHVYVNRVFEHRFQMVSGQWLGRTNF--ELFPEEVARRFQTH 158

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
             ++L       +           +       TF                G+  +  D +
Sbjct: 159 DQMILA----DGLPKEFVEVAPDPDGTQRDWWTFKF--PFRGPAGRRYVGGVAIDITDRK 212

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR--KPFTV 499
             +  + +   +L   L A   GI   +     +  +  VS +FG   E  +   + +  
Sbjct: 213 RMEAALLVSEERLRLALGAAQAGIWDWDIRTNAVQWSDNVSTIFGLSRETFVGTYEAYLA 272

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YS 555
            ++      +   + + +  ++   +E   L    +  +  L      L  +        
Sbjct: 273 LVDPQDLDRLLQAIRQSIQANVEYQIEHRILW--PDGTVHWLACRGDVLRDADGTPVRMV 330

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEK 580
            T+ D++  K+   KL++++     
Sbjct: 331 GTVLDVTARKEMDLKLANSEAQLRA 355



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/259 (9%), Positives = 62/259 (23%), Gaps = 26/259 (10%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI---LHIDPNNHIGDLLKRQNTWYGK 146
           D  G   +++ +  +        ++G    ++           N+ +  +L+ +     +
Sbjct: 368 DREGRYLDVNRQFERAFNLSREAILGKTDTELFSPKQAAVFQTNDRL--VLEAKRPLRFE 425

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
            T    +G    +   +   P+  R+R    +   G+                   +   
Sbjct: 426 ETADYHDGPRTSI---VFKFPLLDRDRML--YAVGGVATDITDRKRAEEALALARDQAME 480

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS-E 265
              +K    +    +          P   +    + L E     +     E         
Sbjct: 481 AARLKSEFLATMSHEIR-------TPMNGVIGMTNLLLESALTPEQRECAEVVRNSGDHL 533

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
              + +  DF  I   + T +      +         +             +G +L    
Sbjct: 534 LMIINDILDFSKIEAGRLTLETIDFDFRG-------MIDDTLDLIAEQARQKGLDLVGLI 586

Query: 326 VDKCPIPFFVYSHGNLFYA 344
               P        G L   
Sbjct: 587 DASVPSAV-RGDPGRLRQV 604


>gi|183220306|ref|YP_001838302.1| two-component sensor protein [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189910423|ref|YP_001961978.1| two component response regulator sensor histidine kinase/response
           regulator subunits [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167775099|gb|ABZ93400.1| Sensor histidine kinase and response regulator of a two component
           complex [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|167778728|gb|ABZ97026.1| Putative two-component sensor protein with CheY-like receiver
           domain [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
          Length = 655

 Score =  392 bits (1007), Expect = e-106,   Method: Composition-based stats.
 Identities = 107/485 (22%), Positives = 203/485 (41%), Gaps = 22/485 (4%)

Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIA-GGLSTLLDAPKLSDNNAIKPVMLYRSDR 391
             +    ++   N +   +  YK+ + +  +   +   + A    + +  +         
Sbjct: 23  IVIDLKFHITSWNLAAERIYGYKAEEALGSSTIDVLKTIFAEGEREKSIAQLQAYGIWQG 82

Query: 392 TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV 451
                              L +        ++    +    I  +  +    +  +    
Sbjct: 83  EVF--------QHKKDGTKLKIRSAASFLKDKEGATIGVIAINRDITEENRIQENLAESE 134

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
            +     E    G+ +++ +G  L  N+ +  + GY   +++ +P   F  +   S+ + 
Sbjct: 135 ERFRMSFENAGIGVCLLDLDGKFLRVNKKIQSMLGYSEVELIGRPSKEFAYKEDQSIFHQ 194

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQE 567
           Y    L       +       +K  ++L + I    +   +     + +  +DI++ K  
Sbjct: 195 YRESALKGKDVDVV-YEKRYVSKTNQILWIEISNSLVKDRNGSPLYFVVHFNDITDRKNA 253

Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
           +  L  AKK AE+ +  KSDF+A +SHEIRTPL  +IGF+E++         +    EY 
Sbjct: 254 EIHLIQAKKEAERANQAKSDFVANMSHEIRTPLNGVIGFNELLMTTNL----DSDQKEYV 309

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
                S + +L I+ND+LDISKIE+GK+ L+    +L   V +++ ++Q  A EK I + 
Sbjct: 310 KNAISSAHGLLGIINDILDISKIEAGKLVLNETISNLKHIVKDSLGVLQWRAKEKNIQLD 369

Query: 688 TSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI-IISTTHTSNEEVI--LRVRD 743
                 +P  I+ D   ++QI +N+L NA+ FT  G  I  I +    NE++     ++D
Sbjct: 370 FEVNPKLPEWIVVDATRLRQILINLLGNAVKFTEKGSVILKIDSEIAENEKIKLNFSIKD 429

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TG+G+         + F Q  ++   R  GTGLGL + K+++D   G+    S   KGT 
Sbjct: 430 TGIGIPESHKPNLFQSFWQGESNSTRRFGGTGLGLRITKSLLDLMGGQIDFSSEEGKGTE 489

Query: 804 IEIIF 808
                
Sbjct: 490 FRFSI 494



 Score = 65.0 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 43/129 (33%), Gaps = 6/129 (4%)

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           IL+   D + +I+ +  I S N A  +++GY  E+ L       L+             I
Sbjct: 14  ILQYFYDAVIVIDLKFHITSWNLAAERIYGYKAEEALGSSTIDVLKTIFAEGERE--KSI 71

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLS 572
             L      +       K+   L +R     L               DI+E  + +  L+
Sbjct: 72  AQLQAYGIWQGEVFQHKKDGTKLKIRSAASFLKDKEGATIGVIAINRDITEENRIQENLA 131

Query: 573 HAKKIAEKE 581
            +++     
Sbjct: 132 ESEERFRMS 140



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/141 (14%), Positives = 40/141 (28%), Gaps = 5/141 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQNTWYGKT 147
           ID   ++   +    +  G  A + +G    DV   +  +         L+    W G+ 
Sbjct: 25  IDLKFHITSWNLAAERIYGYKAEEALGSSTIDVLKTIFAEGEREKSIAQLQAYGIWQGEV 84

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                +GT L +    AA  +  +     G     I      +N  +      +++F   
Sbjct: 85  FQHKKDGTKLKIR--SAASFLKDKEGATIGV--IAINRDITEENRIQENLAESEERFRMS 140

Query: 208 HEIKKGHSSVEKEKYDIFSQQ 228
            E       +           
Sbjct: 141 FENAGIGVCLLDLDGKFLRVN 161



 Score = 46.9 bits (110), Expect = 0.015,   Method: Composition-based stats.
 Identities = 15/138 (10%), Positives = 45/138 (32%), Gaps = 4/138 (2%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD-LLKRQNTWYGKT 147
           +D  G    +++++   +G    ++IG    + +        +   +  LK ++      
Sbjct: 151 LDLDGKFLRVNKKIQSMLGYSEVELIGRPSKEFAYKEDQSIFHQYRESALKGKDVDVVYE 210

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
             + +  TN  + I+++   +  RN     F      +      +      +  K+    
Sbjct: 211 KRY-VSKTNQILWIEISNSLVKDRNGSPLYF--VVHFNDITDRKNAEIHLIQAKKEAERA 267

Query: 208 HEIKKGHSSVEKEKYDIF 225
           ++ K    +    +    
Sbjct: 268 NQAKSDFVANMSHEIRTP 285


>gi|239907994|ref|YP_002954735.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239797860|dbj|BAH76849.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 1093

 Score =  392 bits (1007), Expect = e-106,   Method: Composition-based stats.
 Identities = 109/635 (17%), Positives = 216/635 (34%), Gaps = 28/635 (4%)

Query: 190 DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH 249
             +      +         + +           + F         R    +  L +    
Sbjct: 320 SEERHRELVQSAASVILRLDHQGRVVFCNAFGLEFFGFTLEEMIGRDIGLLIDLPDVPGT 379

Query: 250 KDDVLKTEK----YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
           +D             +  + ES+          N            L+  +    E L  
Sbjct: 380 EDSADAASWPQALTAIAQAPESAAALTRQHRRKNGELAWIAWSLRGLRAATGGVSEILCI 439

Query: 306 RNHPSLSAYFDEGENLTPE----TVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDI 360
            N  +     +E    +               + +     + Y +P +L +  Y   +  
Sbjct: 440 GNDITERKRIEEALRASEARYTLVARGANDGIWDWDLRTNIVYYSPRYLEILGYTPDEV- 498

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
                L          D   +       +D       A  + ++        +       
Sbjct: 499 --QSLLDEWTKRIHPDDAENVIRANKRCADGEVDNF-AVEYRMRHKDGAYRWILGRGASL 555

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI-AIINREGIILSTNR 479
            ++    +   G   +    + ++  +     QL  I   T  GI     R+G I+  N 
Sbjct: 556 KDERGVVIRMAGTHTDVTRRKRDEEALRESQDQLAKIFRFTPVGIAITTRRDGRIVDVNE 615

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
             +++FG+   +++ +                 L E+          K      K    +
Sbjct: 616 TGARMFGHVKSEVIGRTAHEVGLWRRTEEREALLAEMARAG--SIFGKELDLRHKNGSTV 673

Query: 540 SLRIIIKKLP--FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
           ++             C    + DI+E K  +  L  +K+ AE  +  KS+FL+ +SHEIR
Sbjct: 674 TVLYSAVANHAYGEPCILSVLVDITERKAMEQALRRSKEAAESANRAKSEFLSTMSHEIR 733

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TP+  I+G  +V+                   I+ +G  +L ++ND+LD+S+IE+G M +
Sbjct: 734 TPMNTILGMVDVLAGTSLTS----DQTHAVKSIELAGAGLLGLLNDILDLSQIEAGGMVI 789

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAI 716
             +   + E  ++   +++  A+ K + +R     ++P  +      ++QI +N+L NAI
Sbjct: 790 EEKSCDIVELTTQLADMMRPDADRKGLELRLEIRGDLPPRLFCCPDRIRQILVNLLGNAI 849

Query: 717 HFTPSGGQIIISTT----HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
            FT  G  +++        T    + L VRDTG+G+   +       F QI  S   +  
Sbjct: 850 KFTQQG-HVVLEVASTPSLTDGPRLRLAVRDTGIGIPADKQAVIFDRFTQINASANRQFG 908

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           G GLGL + K + +   G+  + S P +G+   + 
Sbjct: 909 GVGLGLAICKKLAELMGGRIAVESAPGQGSTFTLS 943



 Score = 93.9 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/391 (7%), Positives = 84/391 (21%), Gaps = 41/391 (10%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS-------------DILHIDPNNHIG 134
            +D  G +   +    +  G    +MIG  +  +                        I 
Sbjct: 337 RLDHQGRVVFCNAFGLEFFGFTLEEMIGRDIGLLIDLPDVPGTEDSADAASWPQALTAIA 396

Query: 135 DLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR 194
              +       +       G   ++   L  L   +     S      I +         
Sbjct: 397 QAPESAAALTRQ--HRRKNGELAWIAWSLRGL--RAATGGVS--EILCIGNDITERKRIE 450

Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEY-----Y 247
              +  + +++ +             + +I         +     ++V SL +      +
Sbjct: 451 EALRASEARYTLVARGANDGIWDWDLRTNIVYYSPRYLEILGYTPDEVQSLLDEWTKRIH 510

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH-- 305
               + +          E  +   +      +           +L++             
Sbjct: 511 PDDAENVIRANKRCADGEVDNFAVEYRMRHKDGAYRWILGRGASLKDERGVVIRMAGTHT 570

Query: 306 --RNHPSLSAYFDEGENLTPETVDKCPIPFFVY--SHGNLFYANPSFLLLTKYKSVDDIE 361
                        E ++   +     P+   +     G +   N +   +  +   + I 
Sbjct: 571 DVTRRKRDEEALRESQDQLAKIFRFTPVGIAITTRRDGRIVDVNETGARMFGHVKSEVIG 630

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                  L    +  +    +         +       L     N      +       A
Sbjct: 631 RTAHEVGLWRRTEEREALLAEMARA----GSIFGKELDLR--HKNGSTVTVLYSAVANHA 684

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
              P  +       +  + +  ++ +     
Sbjct: 685 YGEPCILSVLV---DITERKAMEQALRRSKE 712



 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/255 (9%), Positives = 56/255 (21%), Gaps = 13/255 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKM--IGMRLCDVSDILHIDPNNHIGDLLKRQNTW 143
            W+ D    +   S    + +G    ++  +             +               
Sbjct: 471 IWDWDLRTNIVYYSPRYLEILGYTPDEVQSLLDEWTKRIHPDDAENVIRANKRCADGEVD 530

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                         Y  I      +          R  G               +    +
Sbjct: 531 NFAVEYRMRHKDGAYRWILGRGASLKDERGVVI--RMAGTHTDVTRRKRDEEALRESQDQ 588

Query: 204 FSHLHEIKK-GHSSVEKEKYDIFSQQSPPPH--LRMKNKVSSLTEYYAHKDDVLKTEKYP 260
            + +      G +   +    I             +K++V   T +          E+  
Sbjct: 589 LAKIFRFTPVGIAITTRRDGRIVDVNETGARMFGHVKSEVIGRTAHEVGL-WRRTEEREA 647

Query: 261 LLTSEESS---LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
           LL     +     ++ D    N +  T    +  + N++      LS     +     ++
Sbjct: 648 LLAEMARAGSIFGKELDLRHKNGS--TVTVLYSAVANHAYGEPCILSVLVDITERKAMEQ 705

Query: 318 GENLTPETVDKCPIP 332
               + E  +     
Sbjct: 706 ALRRSKEAAESANRA 720



 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/291 (11%), Positives = 77/291 (26%), Gaps = 17/291 (5%)

Query: 74  FVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI 133
           F F P+   +         G + +++E   +  G+   ++IG    +V      +    +
Sbjct: 593 FRFTPVGIAI----TTRRDGRIVDVNETGARMFGHVKSEVIGRTAHEVGLWRRTEEREAL 648

Query: 134 GDLLKRQNTWYGKTT-LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192
              + R  + +GK   L    G+ + V     A   Y      S      ++        
Sbjct: 649 LAEMARAGSIFGKELDLRHKNGSTVTVLYSAVANHAYGEPCILS------VLVDITERKA 702

Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD 252
                +R  +     +  K    S    +              +     +  + +A K  
Sbjct: 703 MEQALRRSKEAAESANRAKSEFLSTMSHEIRTPMNTILGMVDVLAGTSLTSDQTHAVKSI 762

Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLN-----QYTKKQYFGTLQNNSKESFEYLSHRN 307
            L       L ++   L + E    +             Q    ++ ++      L    
Sbjct: 763 ELAGAGLLGLLNDILDLSQIEAGGMVIEEKSCDIVELTTQLADMMRPDADRKGLELRLEI 822

Query: 308 HPSLSAYFDEGENLTPETV-DKCPIPFFVYSHGNLFYANPSFLLLTKYKSV 357
              L        +   + + +           G++     S   LT    +
Sbjct: 823 RGDLPPRLFCCPDRIRQILVNLLGNAIKFTQQGHVVLEVASTPSLTDGPRL 873


>gi|298248600|ref|ZP_06972405.1| multi-sensor signal transduction histidine kinase [Ktedonobacter
            racemifer DSM 44963]
 gi|297551259|gb|EFH85125.1| multi-sensor signal transduction histidine kinase [Ktedonobacter
            racemifer DSM 44963]
          Length = 1036

 Score =  392 bits (1007), Expect = e-106,   Method: Composition-based stats.
 Identities = 109/771 (14%), Positives = 243/771 (31%), Gaps = 46/771 (5%)

Query: 55   TDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI 114
            TD  ++        +S  +          +  W     G  +  ++      G       
Sbjct: 291  TDIEEQKRIEQQLKESRESLRVLAEAVP-QLVWVARPDGQFEYTNQRWDDYTGLTHEPGQ 349

Query: 115  GMRL--CDVSDILHIDPNNH-IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSR 171
              R            + N       L   + +  +        T  Y      ALP+   
Sbjct: 350  SDRWAHRQCIHPDDREGNRAHCQHALATGDMFEHEH-RIRNGQTGEYRWFLTRALPVKDD 408

Query: 172  NREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231
              +    + FG               K  ++ +  L E         +    +       
Sbjct: 409  TGQV--LKWFGTCTDIEEQKRIEQQLKESEENWRVLAETLPHLVWAVRSDGRLEYANQHV 466

Query: 232  P--HLRMKNKVSSLTE---YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKK 286
                    +           +    + ++  +  +L + E    E               
Sbjct: 467  STYLGAFPDSFLGDEWRQFVHPDDYERVQAARRHVLETGEPYEGEYRLKERQTGRYRWFL 526

Query: 287  QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE----TVDKCPIPFFVYS-HGNL 341
                 +++ + +  +              ++    + E      +  P   +V    G  
Sbjct: 527  ARLMPVRDETGQIVKRFGTATDIEEQKQAEQQLKESEENWRVLAEMVPQLVWVRRPDGPH 586

Query: 342  FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401
             Y N  +   T    ++ +            P   ++N +                 RL 
Sbjct: 587  EYTNQRWCDYTGLT-LEHMRSDQWAHLQFVHPDDQESNRVH-WQHALDTGAMFEHEVRLR 644

Query: 402  TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
              Q                 ++  + +   G + +  + +  +  +     ++ +++ ++
Sbjct: 645  NAQT--GKYRWFLARAMPVRDEAGQIIKWFGTDTDIEEQKRIEAALRQSQERVNALMNSS 702

Query: 462  SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL--EQNTPSVMNHYLTEILSL 519
              GI  I+    I+  N A   + GY  ED+                +       E+++ 
Sbjct: 703  IIGI-TISEGEQIVDANDAFLHMTGYTREDLHEGRINWMHMTPPECLARTFEAHQELIAQ 761

Query: 520  DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY-SLTMHDISEWKQEKNKLSHAKKIA 578
                  EK  +    +   L + + +  LP         + D S  K+ + +        
Sbjct: 762  QSTSPYEKEYVCQ--DGSRLPVLMGLVALPHQPHQTIGFVLDNSARKELEQR-------- 811

Query: 579  EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
                  K DF+   SHE+R PL A+   ++ +  +R     + +     + ++     + 
Sbjct: 812  ------KDDFINMASHELRNPLAALKMQTQ-LVRKRLEKQSHHKAATALSKVEGPIKQLE 864

Query: 639  DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
             ++ +LLD+S+I++GK+    EPV LD  + E    +       RIL+  +   ++   +
Sbjct: 865  RLIAELLDVSRIQAGKLEYQQEPVDLDALLQEVTETLPQIYPSHRILVDGAVHTSL---I 921

Query: 699  ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
             D   + Q+  N+L NAI ++P    + +  + + +  V +RVRD G+G+   + +K  +
Sbjct: 922  GDRDRLGQVFANLLCNAIKYSPGAETVEMDLSASDD-MVTIRVRDHGLGIPREQRDKIFE 980

Query: 759  PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             F ++   +Q    G G+GL +   +V  + G   + S   KG+   +  P
Sbjct: 981  RFYRVAGPRQKAIPGLGMGLYIVSEIVKHHGGSITVDSEVGKGSTFTVTLP 1031



 Score =  180 bits (458), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 59/585 (10%), Positives = 140/585 (23%), Gaps = 36/585 (6%)

Query: 24  DLSKKKIDNGFETEKSKKENPCHDSFE--QSNFTDQNQESVSNTNYLDSENTFVFDPIPR 81
           D + K ID  F     ++       F   Q       ++  +     +SE  F       
Sbjct: 129 DYTLKPIDRDFFVAGVRRALQTRQLFRLVQEKQQAIEEQKRTEQQLKESEENFRVLAEMV 188

Query: 82  TVRFTWNIDAHGYLKEISEELPKTIGNYAFKM---IGMRLCDVSDILHIDPNNHIGDLLK 138
             +F W   + G +   ++     IG    ++       L  V          H    L 
Sbjct: 189 P-QFVWVTRSDGRVDYCNQRRRDYIGLTLEQLQSDCCAYLQAVHPEDWESSRAHWQHALD 247

Query: 139 RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
             + +  +        T  Y      ALP+     +    + FG               K
Sbjct: 248 TGDIYEHEQ-RMRQGTTGEYRWFLARALPVRDDTGQII--KWFGTDTDIEEQKRIEQQLK 304

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR-------MKNKVSSLTEYYAHKD 251
              +    L E       V +                         ++ +     +    
Sbjct: 305 ESRESLRVLAEAVPQLVWVARPDGQFEYTNQRWDDYTGLTHEPGQSDRWAHRQCIHPDDR 364

Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
           +  +      L + +    E    +               +++++ +  ++         
Sbjct: 365 EGNRAHCQHALATGDMFEHEHRIRNGQTGEYRWFLTRALPVKDDTGQVLKWFGTCTDIEE 424

Query: 312 SAYFDEGENLTPE----TVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
               ++    + E      +  P   +     G L YAN              +   G  
Sbjct: 425 QKRIEQQLKESEENWRVLAETLPHLVWAVRSDGRLEYANQHVSTYLGAFPDSFL---GDE 481

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
                 P   D+             T           +                 ++  +
Sbjct: 482 WRQFVHP---DDYERVQAARRHVLETGEPYEGEYRLKERQTGRYRWFLARLMPVRDETGQ 538

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
            + + G   +  + +  +++++        + E     + +   +G    TN+      G
Sbjct: 539 IVKRFGTATDIEEQKQAEQQLKESEENWRVLAEMVPQLVWVRRPDGPHEYTNQRWCDYTG 598

Query: 487 YPVEDILRKPFTVF--LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE-EKLLSLRI 543
             +E +    +     +  +       +    L        E        +  K      
Sbjct: 599 LTLEHMRSDQWAHLQFVHPDDQESNRVHWQHALDTGA--MFEHEVRLRNAQTGKYRWFLA 656

Query: 544 IIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
               +   +     +  T  DI E K+ +  L  +++      + 
Sbjct: 657 RAMPVRDEAGQIIKWFGTDTDIEEQKRIEAALRQSQERVNALMNS 701



 Score = 73.1 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 13/169 (7%), Positives = 43/169 (25%), Gaps = 9/169 (5%)

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
                 +    + +  +++++        + E     + +   +G +   N+      G 
Sbjct: 155 RLVQEKQQAIEEQKRTEQQLKESEENFRVLAEMVPQFVWVTRSDGRVDYCNQRRRDYIGL 214

Query: 488 PVEDILRKPFTVF--LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK-EEKLLSLRII 544
            +E +          +          +    L        E           +       
Sbjct: 215 TLEQLQSDCCAYLQAVHPEDWESSRAHWQHALDTGD--IYEHEQRMRQGTTGEYRWFLAR 272

Query: 545 IKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
              +   +     +  T  DI E K+ + +L  +++     +      +
Sbjct: 273 ALPVRDDTGQIIKWFGTDTDIEEQKRIEQQLKESRESLRVLAEAVPQLV 321


>gi|302035961|ref|YP_003796283.1| putative histidine kinase [Candidatus Nitrospira defluvii]
 gi|300604025|emb|CBK40357.1| putative Histidine kinase [Candidatus Nitrospira defluvii]
          Length = 954

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 116/665 (17%), Positives = 242/665 (36%), Gaps = 57/665 (8%)

Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL-------- 243
             RA  +R  +    +  +   + +V   +  I +           N  +          
Sbjct: 5   QRRAKHRRDHRLDPSIINVLPANIAVLDAQGTILAVNESWERFAAANGFTGESYGVGLNY 64

Query: 244 ----TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS--K 297
                      D     +    +          E   + +  +   +     +Q +    
Sbjct: 65  LRICDAAGTQPDAQHVAQGIRHILDGTIRAFSYEYESSSSTLRRWFRVIVTPMQGSRSYG 124

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKS 356
               +++  +     A   + E      VD        +   G +   NP+   +  Y S
Sbjct: 125 AVVMHINVSDLKQAEAAMHQSEVRLRAIVDTAVDGIVVINERGIIESVNPAVTRMFGYTS 184

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
              +     L  L+  P  ++++      L    +  I     +  ++ +    ++    
Sbjct: 185 NQLLGQNVKL--LMPDPYHTEHDRYLTNYLQSGQKKVIGIGREVLGLRNDG---VSFPIE 239

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476
                          GI  +    +  +        Q   ++E+  +G+ +I+  G I  
Sbjct: 240 LAVSEMLVDGARKFTGIVRDISLRKQAEA-------QFRQVVESAPNGMLMIDSLGNITL 292

Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTK 534
            N+ V  +FGY  E++L +P  + + +        +     S    + +   +   G  K
Sbjct: 293 VNKQVETMFGYSREEMLGRPVEMLIPERFRPNHPAHRIGYFSAPSSRAMGAGRELFGLHK 352

Query: 535 EEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKN--------------KLSHAKKIA 578
             +   + + +  +   +      ++ DI+  K+ ++              ++S A+  A
Sbjct: 353 SGQEFPVELGLNPIDTPNGKLALASIVDITMRKRTESALSKAAQDLEWKNWEISEARDQA 412

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
            K    K+DFLA +SHEIRTP+  ++G + ++ +            +Y   +  S   +L
Sbjct: 413 VKAGQAKTDFLATMSHEIRTPMNGVLGMTTLLLDTALST----EQRDYLQTLRHSSESLL 468

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-I 697
            I+ND+LD SKIE+GK  +   P  L   + + + ++   + ++ + +        PR +
Sbjct: 469 RIINDILDFSKIEAGKFTIEQIPFDLRMTIEDTLDMLAPASQDRHLELVGLIDAQTPRTV 528

Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDTGVGMTNYEL 753
           + D   ++Q+  N+L NAI FT  G +++I       +     +   V DTG+G++    
Sbjct: 529 IGDPGRIRQVLTNLLGNAIKFTEQG-EVLIQVLPLDEDPTFVMLRFEVIDTGIGLSPEAQ 587

Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL--IEIIFPLY 811
            K  + F Q  +S   +  GTGLGL + K +V+   G+  + S P  GT     + F L 
Sbjct: 588 AKMFQAFTQADSSTARKYGGTGLGLTICKRLVELMGGEIGLQSMPGLGTRIWFTVRFALQ 647

Query: 812 DTSHP 816
             + P
Sbjct: 648 ADAAP 652



 Score = 62.7 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/387 (10%), Positives = 103/387 (26%), Gaps = 38/387 (9%)

Query: 89  IDAHGYLKEIS---EELPKTIGNYAFK-MIGMRLCDVSDILHIDPNNH-----IGDLLKR 139
           +DA G +  ++   E      G       +G+    + D     P+       I  +L  
Sbjct: 31  LDAQGTILAVNESWERFAAANGFTGESYGVGLNYLRICDAAGTQPDAQHVAQGIRHILDG 90

Query: 140 QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHV---NRVDNDPRAL 196
             T    +  +    + L     +   P+        G R +G V +           A 
Sbjct: 91  --TIRAFSYEYESSSSTLRRWFRVIVTPMQ-------GSRSYGAVVMHINVSDLKQAEAA 141

Query: 197 GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP------PPHLRMKNKVSSLTEYYAHK 250
             + + +   + +       V  E+  I S              ++  +   L     + 
Sbjct: 142 MHQSEVRLRAIVDTAVDGIVVINERGIIESVNPAVTRMFGYTSNQLLGQNVKLLMPDPYH 201

Query: 251 DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310
            +  +     L + ++  +    +   +  +  +        +     + ++       S
Sbjct: 202 TEHDRYLTNYLQSGQKKVIGIGREVLGLRNDGVSFPIELAVSEMLVDGARKFTGIVRDIS 261

Query: 311 LSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
           L    +       + V+  P     + S GN+   N     +  Y   + +     +  L
Sbjct: 262 LRKQAEAQ---FRQVVESAPNGMLMIDSLGNITLVNKQVETMFGYSREEMLGRP--VEML 316

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS-LAMTFIPFEKANQFPENM 428
           +      ++ A +           + A   L  +  + +   + +   P       P   
Sbjct: 317 IPERFRPNHPAHRIGYFSAPSSRAMGAGRELFGLHKSGQEFPVELGLNPI----DTPNGK 372

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLC 455
                  +    +  +  +      L 
Sbjct: 373 LALASIVDITMRKRTESALSKAAQDLE 399



 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/399 (10%), Positives = 119/399 (29%), Gaps = 33/399 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD-ILHIDPNNHIGDLLKRQNTWY--- 144
           I+  G ++ ++  + +  G  + +++G  +  +     H + + ++ + L+         
Sbjct: 163 INERGIIESVNPAVTRMFGYTSNQLLGQNVKLLMPDPYHTEHDRYLTNYLQSGQKKVIGI 222

Query: 145 -GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK---RL 200
             +      +G +  + + ++ + +    R+F+G     IV    +     A  +     
Sbjct: 223 GREVLGLRNDGVSFPIELAVSEMLV-DGARKFTG-----IVRDISLRKQAEAQFRQVVES 276

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
                 + +     + V K+   +F         R    +        H    +     P
Sbjct: 277 APNGMLMIDSLGNITLVNKQVETMFGYSREEMLGRPVEMLIPERFRPNHPAHRIGYFSAP 336

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
              +  +    +      +  ++  +     +  ++      L+     ++    +   +
Sbjct: 337 SSRAMGAGR--ELFGLHKSGQEFPVELGLNPI--DTPNGKLALASIVDITMRKRTESALS 392

Query: 321 LTPETVDKCPIPFFVYSHGNLF--YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
              + ++             +    A   FL    ++    +    G++TLL    LS  
Sbjct: 393 KAAQDLEWKNWEISEARDQAVKAGQAKTDFLATMSHEIRTPMNGVLGMTTLLLDTALSTE 452

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
                  L  S  + +     +            + F   E      E +P +     + 
Sbjct: 453 QRDYLQTLRHSSESLLRIINDI------------LDFSKIEAGKFTIEQIPFDLRMTIED 500

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
              +     +   ++L  +++A +    I +  G I   
Sbjct: 501 TLDMLAPASQDRHLELVGLIDAQTPRTVIGDP-GRIRQV 538


>gi|315185412|gb|EFU19184.1| PAS/PAC sensor hybrid histidine kinase [Spirochaeta thermophila DSM
            6578]
          Length = 1278

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 134/768 (17%), Positives = 271/768 (35%), Gaps = 69/768 (8%)

Query: 89   IDAHGYLKEISEELPK----TIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144
             D+   +   +           G     ++G  +  VS  +       + +  ++  T  
Sbjct: 278  TDSDRRILYANTAFETWAYLLEGRPLPSLVGKPISLVSRAIDAHLRPLLEEA-EKSATVI 336

Query: 145  GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
             +   W  +     +  ++   P++   +++   R   I+H          L  +  + +
Sbjct: 337  LREISW--QHRAEEITTEVTIFPLH---KDYETARWLIILHNITHRKRTERLLSQQKQFY 391

Query: 205  SHLHEIKKGHSSVEKEKYDIF----------------SQQSPPPHLRMKNKVSSLTEYYA 248
              + E             D                   +    P  R+     S      
Sbjct: 392  RQMLEALPIGVYTLDPLSDYTVSLWNPYMERITGVPRQKALGVPETRLFPPPFSEELEVL 451

Query: 249  HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKK-------------QYFGTLQNN 295
            ++  +       L+ S E   P QE+   + + +                 +     +  
Sbjct: 452  NRKILEDPLTPVLVPSMEVEFPHQEESRIVKVQKRGVLTPEGELDHILVLLEDITEQRRT 511

Query: 296  SKESFEYLSHRNHPSLSAYFDEGENLTP-ETVDKCPIPFFVY---SHGNLFYANPSFLLL 351
             +E   Y +H          +        + + +      +        +   NP+   L
Sbjct: 512  EEELERYRTHLEEEVARKSAELARAAMEMDAILRSTESVAICSMNRDLRIQIFNPTLARL 571

Query: 352  TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411
            ++             + L     +          +               +I       L
Sbjct: 572  SRMYFKRPPRREMRFTDLFPTRTMQRQVETAVSRVL--SGQTFTTR---FSISRRNLLPL 626

Query: 412  AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471
             +  +   K N+  E +    I  +       +R+M +      +I +    G  II+  
Sbjct: 627  HLEVVISPKRNEEGEILGATVIAMDITQRATVERQMRL----FKAIADTAPYGTVIIDAN 682

Query: 472  GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
              I+  N  ++++ GY +E+++ +  ++F  +     +   LT    + +  +  +    
Sbjct: 683  HTIVYANPYMARIHGYRLEEVMGQHLSIFHTEEQYEKLIEELTRAEDVGVMPS--QEIWH 740

Query: 532  STKEEKLLSLRIIIKKLPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
              + +    +      +     +     +   D+S  K+ + KL  AK+ AE+    KS+
Sbjct: 741  VYQGQLPFPMLTTATFIKDEEGHVTYIGIVSLDMSLQKEAEQKLKEAKEEAERAMRAKSE 800

Query: 588  FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
            FLA +SHEIRTPL AIIGF++++         + +   Y + I  SG  +L ++ND+LD+
Sbjct: 801  FLANMSHEIRTPLNAIIGFTDLLA----SSFPSGKEASYLDAIRSSGKNLLMLINDILDL 856

Query: 648  SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQ 706
            SKIE+GKM L + PV L   + E  ++ +     K +     +A  +P  +  D   ++Q
Sbjct: 857  SKIEAGKMTLSYSPVDLRSFIEEIANIFRTQVENKGLSFILDYAPALPPTVEIDELRLRQ 916

Query: 707  IALNILSNAIHFTPSGGQIIISTT-----HTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761
            +  N++ NAI FT  G  + +          S  ++ + V DTG+G+   E E   + F 
Sbjct: 917  VLFNLIGNAIKFTEQG-HVKVQVRGTLHTEESKVDLTISVEDTGIGIRPEEREAIFQSFH 975

Query: 762  QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            Q       +  GTGLGL ++K +V+   G   + S   KGT   +  P
Sbjct: 976  QSSGQDSRKYGGTGLGLTISKRLVEMMGGTISVESEYGKGTTFTVRIP 1023



 Score =  108 bits (269), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 57/357 (15%), Positives = 108/357 (30%), Gaps = 19/357 (5%)

Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTI---NLNQYTKKQYFGTLQNNSKESFEYLSH 305
             + +   E     + EE      + FH          T               F  L  
Sbjct: 188 EPEFLATVEPDARKSLEEFLAAPHDTFHGRFSFPGRGRTSFLVIPLPVQGRIRPFLLLDV 247

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAG 364
                      E   L    +D       V      + YAN +F           +    
Sbjct: 248 HAETLYFESLQEQRRLFTSVLDSFTDYILVTDSDRRILYANTAFETW------AYLLEGR 301

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
            L +L+  P    + AI   +    +    +A+  L  I W        T +     ++ 
Sbjct: 302 PLPSLVGKPISLVSRAIDAHLRPLLEEAEKSATVILREISWQHRAEEITTEVTIFPLHKD 361

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR--EGIILSTNRAVS 482
            E      I       +  +R +  +      +LEA   G+  ++   +  +   N  + 
Sbjct: 362 YETARWLIILHNITHRKRTERLLSQQKQFYRQMLEALPIGVYTLDPLSDYTVSLWNPYME 421

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL----EKITLGSTKEEKL 538
           ++ G P +  L  P T          +     +IL   L   L    E        E ++
Sbjct: 422 RITGVPRQKALGVPETRLFPPPFSEELEVLNRKILEDPLTPVLVPSMEVEFPHQE-ESRI 480

Query: 539 LSL--RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
           + +  R ++          + + DI+E ++ + +L   +   E+E + KS  LAR +
Sbjct: 481 VKVQKRGVLTPEGELDHILVLLEDITEQRRTEEELERYRTHLEEEVARKSAELARAA 537


>gi|21228280|ref|NP_634202.1| two component system histidine kinase [Methanosarcina mazei Go1]
 gi|20906740|gb|AAM31874.1| Two component system histidine kinase [Methanosarcina mazei Go1]
          Length = 813

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 113/548 (20%), Positives = 220/548 (40%), Gaps = 21/548 (3%)

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQ--NNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
              + D    +     ++     ++    +                    + E       
Sbjct: 246 FTFEMDSLRRDGTVIPQEVNNRLIEYDGETAVLSIGRDISKRRQTEKALRDSERKYRMLF 305

Query: 327 DKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
           ++ P     +   G +   N +F+  T     + +     +  LL+ P+           
Sbjct: 306 EEFPGGIAQFDKYGTIIVCNENFVNFTGSGENEKL-----IFNLLNPPEEKKQEEKGFTC 360

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
           L       +     +  I    +  +          ++         +  +  + +  + 
Sbjct: 361 L-----PEVPIHCDIKYISSLEDEIIPGEITYKPLISENSRFNGGIILVEDLTEVKRLEA 415

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
               +   L  ++ +        +R G+ ++ N+    L     +DI+ K    F+    
Sbjct: 416 VRLQQTETLRKLVGSIPVPAFCKDRNGVYIACNKGFENLLRVQKQDIIGKHIYDFIPHKI 475

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL----RIIIKKLPFSSCYSLTMHDI 561
               +     ++           T     +  +  +     I        S     M DI
Sbjct: 476 AENYHAMDIGLVKHKRNHVY--ETSLKFPDGSVHQVMLNKFIFSGVTEEDSVLLGIMIDI 533

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           +E KQ + ++  AK +AE  +  K+ F+  +SHE+RTPL A+IGFS+++ ++  GPL N 
Sbjct: 534 TERKQAEERMLQAKMVAEAANRAKTTFIVNMSHELRTPLNAVIGFSDLLLSETVGPL-NE 592

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
           +   Y   I +SGN +LD++ND+LDISK+E G + L++E V +   + E   ++   + +
Sbjct: 593 KQKRYTENISKSGNHLLDVINDVLDISKLELGNIELYYETVDVAGIIEEVQRVLSPLSAD 652

Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
           K I+I +    ++  ++AD   +KQI  NIL+NAI F+   G++ I      +  + + V
Sbjct: 653 KNIIIESYIEKDLKTVIADRVKLKQILYNILNNAIKFSSENGKVNIYAEPRED-MIEISV 711

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            D G+G+   + EK  +PF QI  S   +  G GLGL L K  V+ + GK ++ ++P  G
Sbjct: 712 EDEGIGIQESDYEKVFQPFVQIDESISRKHGGVGLGLALVKRFVELHGGKVWVKASPGGG 771

Query: 802 TLIEIIFP 809
           ++     P
Sbjct: 772 SIFTFRIP 779



 Score = 77.4 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 17/143 (11%), Positives = 47/143 (32%), Gaps = 8/143 (5%)

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
           +  +++E + D I I +  G +L  N    + FGY    ++ K                 
Sbjct: 177 KFKTLIENSGDSILIHDMNGKVLEANHVACETFGYTRSKMIGKHIKDLRTSIHLIEFGQQ 236

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLS--LRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570
           + ++                 ++  ++   +   + +    +       DIS+ +Q +  
Sbjct: 237 IEKLKQTG---YFTFEMDSLRRDGTVIPQEVNNRLIEYDGETAVLSIGRDISKRRQTEKA 293

Query: 571 LSHAKKIAEKESSHKSDFLARVS 593
           L  +++          +F   ++
Sbjct: 294 LRDSERKYRMLFE---EFPGGIA 313



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 47/369 (12%), Positives = 110/369 (29%), Gaps = 21/369 (5%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D +G + E +    +T G    KMIG  + D+   +H+       + LK+   +  +   
Sbjct: 193 DMNGKVLEANHVACETFGYTRSKMIGKHIKDLRTSIHLIEFGQQIEKLKQTGYFTFEMDS 252

Query: 150 WPIEGTNLYVPIDLAALPI-YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
              +GT   +P ++    I Y             I              +  ++K+  L 
Sbjct: 253 LRRDGT--VIPQEVNNRLIEYDGETAV-----LSIGRDISKRRQTEKALRDSERKYRMLF 305

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           E   G  +   +   I        +     +   L     +  +  K E+       E  
Sbjct: 306 EEFPGGIAQFDKYGTIIVCNENFVNFTGSGENEKLIFNLLNPPEEKKQEEKGFTCLPEVP 365

Query: 269 LPEQEDF-HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
           +     +  ++       +  +  L + +      +      +     +       ET+ 
Sbjct: 366 IHCDIKYISSLEDEIIPGEITYKPLISENSRFNGGIILVEDLTEVKRLEAVRLQQTETLR 425

Query: 328 KC----PIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
           K     P+P F    +G     N  F  L + +  D I     +   +      + +A+ 
Sbjct: 426 KLVGSIPVPAFCKDRNGVYIACNKGFENLLRVQKQDIIGK--HIYDFIPHKIAENYHAMD 483

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             ++               ++++   +   +    F  +    E+    GI  +  + + 
Sbjct: 484 IGLVKHKRN-----HVYETSLKFPDGSVHQVMLNKFIFSGVTEEDSVLLGIMIDITERKQ 538

Query: 443 NKRKMEIEV 451
            + +M    
Sbjct: 539 AEERMLQAK 547


>gi|90856146|gb|ABE01358.1| sensory histidine kinase/response regulator hybrid [Allochromatium
           vinosum]
          Length = 742

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 136/733 (18%), Positives = 279/733 (38%), Gaps = 52/733 (7%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI-DPNNHIGDLL-KRQNTWYGKTT 148
           A G   E ++     +G  + +   +R+ D        D   HI  +L + ++ +  +T 
Sbjct: 38  ADGSTLEFNQVSCAQLGYTSEEFARLRISDYEVQESAEDVAAHIRRVLTQGRDEF--ETQ 95

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN-RVDNDPRALGKRLDKKFSHL 207
               +G  + V + ++ L +  R           +V    R   D R   +  ++     
Sbjct: 96  HRHKDGRVIDVSVAVSCLDLGERP------VLLAVVRDISRRKQDERQAHQAEERLQLAT 149

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK------VSSLTEYYAHKDDVLKTEKYPL 261
              K G    + ++  +   +       ++ +      V   T         +K +   L
Sbjct: 150 EAAKLGIWDYDIQQDRLIWDERMFQLYGLEPREFGYRFVDWSTLVLPESLQRVKADFQAL 209

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE---- 317
           + S      + +     +    T +       ++   +   +      +           
Sbjct: 210 VESGRPFDVKFQIRRPSDGEIRTLRGLARVTHDDQGRAIRVVGVNEDITEFQAVQREILD 269

Query: 318 GENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
            E    +  ++     + V + G   Y +P   L+  Y   + +            P+  
Sbjct: 270 REQRLQQLAEQSRTVTWEVDAQGRYTYLSPVAELVWGYTPDEIVGRRYFYD---LHPEPG 326

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
                + +    +    +     ++ I       + ++       +     +   G + +
Sbjct: 327 REAFREAIFQAIA--QQLKFQGHVNPIIRKDGRVIWVSTNAIPVTDDRGLLLGYRGSDVD 384

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAII-----NREGIILSTNRAVSKLFGYPVED 491
             + +  K  +E E  +   I E T   +A+      +++ I    N A  ++     + 
Sbjct: 385 ITEAKYAKEALEAEKERFRGIFEKTGSAVAVYQPTDDSQDFIFTDYNPAAERIDRTTRQA 444

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
           ++ +  T          +   L  +      Q +        ++++L + R        S
Sbjct: 445 VIGRCLTECFPAAIEMGLVDMLRRVNLTGQTQYM---PSAYYQDDRLQAWRENTIFKLSS 501

Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
                  +D++E K+ +         AE+ S  KS FLA +SHEIRTP+ A+IG S+++ 
Sbjct: 502 GEVVAVYNDLTEIKRAQE-------AAERASRAKSQFLANMSHEIRTPMNAVIGLSDLLL 554

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
                   + +  +Y   I  S  L+L I+ND+LD SKIE+GK++L  +P SLD+ + + 
Sbjct: 555 ETPL----DAKQRDYLGKIRESSRLLLGIINDILDYSKIEAGKLDLSLQPFSLDDLLDQM 610

Query: 672 ISLVQLYANEKRILIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
            +L    A+ + I +    A +++ R+  D   ++Q+ +N+LSNA+ FT  G Q+++S  
Sbjct: 611 RTLFGNEADARDIELIFDLAVSSLHRVEGDALRLRQVLINLLSNAVKFTEQG-QVVLSIR 669

Query: 731 HTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
                     +   VRDTG+G+   +  +  KPF Q  +S   R  GTGLGL +++ +V+
Sbjct: 670 QLDAGTASARLRFEVRDTGIGIAPEQQTRLFKPFSQADSSTTRRYGGTGLGLVISQKLVE 729

Query: 787 ANMGKFYIFSTPA 799
              G   + STP 
Sbjct: 730 KMGGTLVLESTPG 742



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 57/148 (38%), Gaps = 6/148 (4%)

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRKPFT 498
             I   +   + ++  ++ E   D   +I+  +G  L  N+      GY  E+  R   +
Sbjct: 7   RSIAATEAARQDVEFRTLFEVYPDATILIDPADGSTLEFNQVSCAQLGYTSEEFARLRIS 66

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCYSL 556
            +  Q +   +  ++  +L+       E  T    K+ +++ + + +    L        
Sbjct: 67  DYEVQESAEDVAAHIRRVLTQGRD---EFETQHRHKDGRVIDVSVAVSCLDLGERPVLLA 123

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSH 584
            + DIS  KQ++ +   A++  +  +  
Sbjct: 124 VVRDISRRKQDERQAHQAEERLQLATEA 151



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 56/390 (14%), Positives = 112/390 (28%), Gaps = 43/390 (11%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMR-LCDVSDILHIDP-NNHIGDLLKRQNTW 143
           TW +DA G    +S       G    +++G R   D+      +     I   + +Q  +
Sbjct: 285 TWEVDAQGRYTYLSPVAELVWGYTPDEIVGRRYFYDLHPEPGREAFREAIFQAIAQQLKF 344

Query: 144 YGKTT-LWPIEGTNLYVPIDLAALPIYSRNREFSGFRG--FGIVHVNRVDNDPRALGKRL 200
            G    +   +G    + +   A+P+        G+RG    I           A  +R 
Sbjct: 345 QGHVNPIIRKDGR--VIWVSTNAIPVTDDRGLLLGYRGSDVDITEAKYAKEALEAEKERF 402

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL-----RMKNKVSSLTEYYAHKDDVLK 255
              F         +   +  +  IF+  +P         R       LTE +    ++  
Sbjct: 403 RGIFEKTGSAVAVYQPTDDSQDFIFTDYNPAAERIDRTTRQAVIGRCLTECFPAAIEMGL 462

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
            +    +     +      ++  +  Q  ++     L      S E ++  N  +     
Sbjct: 463 VDMLRRVNLTGQTQYMPSAYYQDDRLQAWRENTIFKL-----SSGEVVAVYNDLTEIKRA 517

Query: 316 DEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
            E                          A   FL    ++    +    GLS LL    L
Sbjct: 518 QEAAERASR-------------------AKSQFLANMSHEIRTPMNAVIGLSDLLLETPL 558

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
                     +  S R  +     +          L ++  PF   +   +     G E 
Sbjct: 559 DAKQRDYLGKIRESSRLLLGIINDILDYSKIEAGKLDLSLQPFSLDDLLDQMRTLFGNEA 618

Query: 436 EDVDTRI-------NKRKMEIEVMQLCSIL 458
           +  D  +       +  ++E + ++L  +L
Sbjct: 619 DARDIELIFDLAVSSLHRVEGDALRLRQVL 648


>gi|91774312|ref|YP_567004.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanococcoides burtonii DSM 6242]
 gi|91713327|gb|ABE53254.1| luxQ-like PAS sensor signal transduction histidine kinase
           [Methanococcoides burtonii DSM 6242]
          Length = 371

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 106/363 (29%), Positives = 181/363 (49%), Gaps = 7/363 (1%)

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
             ++  + +DGI II  +G  L  N+      GY   ++L+             +    +
Sbjct: 5   YETVFNSVNDGILIITLDGRFLEVNQITCDDLGYQRHELLQMTVMDITPPEFREMARENV 64

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP--FSSCYSLTMHDISEWKQEKNKL 571
              +           T+   K+  L+ + + I  +    +        +I+E K+ +  +
Sbjct: 65  IGKMKQGGGIV---ETISICKDGSLVPIELNIHPIEYNGAPAILAVARNITERKKAEEAM 121

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
             AK  AE  +  KS+FLA +SHE+RTPL +IIGFS+VI N+  G L N    ++ + + 
Sbjct: 122 LSAKLAAEDANKSKSEFLANMSHELRTPLNSIIGFSDVISNESHGSL-NELQKKFISNVI 180

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
            +G  +L+I+ND+L  S+IE+GKM LH     + E+++E   L+   A+EK I ++ +  
Sbjct: 181 SNGKHLLNIINDILSASQIETGKMELHISEFHVSESINEIEVLMIPIASEKNIELKFNID 240

Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751
             +P I AD    +QI  N+++NAI FT  G ++ I    + +  V + V+D+G+G++  
Sbjct: 241 IGMPNIRADATKFEQIIYNLVNNAIKFTNEGEKVEIRGEISDD-FVHISVKDSGIGISPD 299

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
           +  K   PF Q+ +S      GTGLGL + K  V+ + GK ++ S   KG+      P Y
Sbjct: 300 DQNKLFTPFFQVDSSNTREYGGTGLGLAIVKKYVEMHGGKVWVESEVGKGSTFGFRMPTY 359

Query: 812 DTS 814
             S
Sbjct: 360 PES 362



 Score = 47.7 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/137 (13%), Positives = 43/137 (31%), Gaps = 12/137 (8%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID--PNNHIGDLLKRQNTWYGKTTL 149
            G   E+++     +G    +++ M + D++     +    N IG + +       +T  
Sbjct: 22  DGRFLEVNQITCDDLGYQRHELLQMTVMDITPPEFREMARENVIGKMKQGGGIV--ETIS 79

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGF-GIVHVNRVDNDPRALGKRLDKKFSHLH 208
              +G+   VPI+L   PI     E++G      +                        +
Sbjct: 80  ICKDGSL--VPIELNIHPI-----EYNGAPAILAVARNITERKKAEEAMLSAKLAAEDAN 132

Query: 209 EIKKGHSSVEKEKYDIF 225
           + K    +    +    
Sbjct: 133 KSKSEFLANMSHELRTP 149


>gi|284038192|ref|YP_003388122.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
 gi|283817485|gb|ADB39323.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
          Length = 1226

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 148/781 (18%), Positives = 270/781 (34%), Gaps = 75/781 (9%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG-KTTLW 150
            G    ++    + +G  + ++  + L DV    + D    +   ++  +     +T   
Sbjct: 181 DGKFIFVNRAWREALGYNSDEISALNLRDVLHPDYADSTLGLLKRIQEGDKLPYVETVFR 240

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK------------ 198
              G  L++   +        N   + FR   I+H            K            
Sbjct: 241 TKSGKTLFLSGSVNC---RFDNGRPTAFR--CILHDTTGKIRAEKSQKLYYSIANWTINT 295

Query: 199 ------------------RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV 240
                                  F  L++  K + S      + F         ++ N +
Sbjct: 296 PNLGEFYHKIHEELGNIIDARNFFIALYDSSKTYLSFPYYVDEYFGGNMRFTKRKLGNGL 355

Query: 241 SSLT-----EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY------------ 283
              T       + ++ D+ K      +       P+      + + +             
Sbjct: 356 IEYTILANKPLFLYEKDIRKLADQHQVDLYGQLQPQVMLTAPLRIGEEITGIIGVKSYDD 415

Query: 284 TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLF 342
            +      L+     S +           A  D+         D      + V     L 
Sbjct: 416 AQTYGPRDLELLEFISGQVALAIARKQSEARLDKQNARLNAIFDSSTYLIWSVNKALKLT 475

Query: 343 YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT 402
             N ++  L +Y+  +   I      L      +DN         ++ R   A +  L  
Sbjct: 476 SFNKNYTRLIEYQLNESPSIQASAPDLGWRMIGADNRKNLEDRYRQAFRG-FAQNFELFF 534

Query: 403 IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
                E  L     P   A    + +   GI  +  + +  +        +   I E   
Sbjct: 535 ETPKGETYLEFHLNPILLAGGVIDEVS--GIARDITNRKRAEIATRQSEEKFRGIFENLQ 592

Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522
           D  A ++R+G I   + +V K  GY  +++L +  T F           +         R
Sbjct: 593 DIYARVDRKGRITMISPSVFKRMGYTPDEVLGQEITRFFIDENDIRHAMF----KLGRNR 648

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIA 578
                      K+         +  L          ++   DI+E K++  +L  AK  A
Sbjct: 649 SLRNFEASMRRKDGSERQFMFNMLMLNEGPGSDSVVAVLARDITELKRQSAELVKAKNEA 708

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
           E+    K  FLA +SHEIRTP+  +IG  +++ + +     +     Y   + RS   +L
Sbjct: 709 ERSLKVKEQFLANMSHEIRTPMNGVIGMIDLLNDTKL----DEEQRSYVKTVKRSSETLL 764

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-I 697
           +I+ND+LD+SKIE+GKM LH  PV+  E   + I+L    AN K   +     +++P  +
Sbjct: 765 NILNDILDLSKIEAGKMVLHEAPVAFKEIFEKLIALFGQQANSKNNELTYHLGSDLPTFV 824

Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN----EEVILRVRDTGVGMTNYEL 753
           +AD   + Q+  N+ SNAI FT   G I +  +  S       + + V+D+G+G++   +
Sbjct: 825 IADQTRLLQVLSNLTSNAIKFT-ENGTIRVEASLISKRGKFNRIRIEVKDSGIGISQQNI 883

Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
                 F Q+  S +    GTGLGL ++K +     G+  + ST   G+       L +T
Sbjct: 884 NLLFNSFSQVDTSSRKSFGGTGLGLAISKELASLMKGEIGVDSTVGMGSTFWFTIELKET 943

Query: 814 S 814
           S
Sbjct: 944 S 944



 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 49/320 (15%), Positives = 92/320 (28%), Gaps = 19/320 (5%)

Query: 282 QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP-IPFFVYSHGN 340
                +    L    +      +          FD       +TVD+   +   +   G 
Sbjct: 1   MRWSAKTKDELVAEIQRLQHERNEVAVTDALPAFD-----VRQTVDQLNLVGLTIERDGT 55

Query: 341 LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400
           L YANP    +T ++    I        +   P        +                 L
Sbjct: 56  LSYANPYTYRVTAWQPEHIIGQNFF--DIFIPPAERAKLEAEFEDALTKGGFPEQKEITL 113

Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
                       +    F              I  +  + R     +     QL  +++ 
Sbjct: 114 LA---RSGALRNVQVNSFIINGADGHVSSFTLIGEDVTNKRRVASALSNTNAQLQDLVDN 170

Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520
           TSD I ++  +G  +  NRA  +  GY  ++I        L  +        L  I   D
Sbjct: 171 TSDLIQLLTLDGKFIFVNRAWREALGYNSDEISALNLRDVLHPDYADSTLGLLKRIQEGD 230

Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---YSLTMHDISEWKQEK--NKLSHAK 575
               +   T+  TK  K L L   +     +     +   +HD +   + +   KL ++ 
Sbjct: 231 KLPYV--ETVFRTKSGKTLFLSGSVNCRFDNGRPTAFRCILHDTTGKIRAEKSQKLYYSI 288

Query: 576 KIAEKESSHKSDFLARVSHE 595
                 + +  +F  ++ HE
Sbjct: 289 ANWTINTPNLGEFYHKI-HE 307


>gi|218246196|ref|YP_002371567.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 8801]
 gi|218166674|gb|ACK65411.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 8801]
          Length = 1578

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 133/763 (17%), Positives = 269/763 (35%), Gaps = 52/763 (6%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGM-RLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
            +D++G    I++     +G    ++IG  +L D+         +   +LLK+  +     
Sbjct: 599  LDSNGVFIHINDTELTWLGYTREQVIGKVKLLDLLIPKSRKTFSQHFELLKQGYSINSLE 658

Query: 148  TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                       + I L   PI      F   R    +       +     ++   + + L
Sbjct: 659  LSMLRSNGT-VMSIMLNVNPIQDTEGNFIMSR--ATLFDISEHKEAEKTLQKYADEITDL 715

Query: 208  HEIKKGHSSVEKEKYDIFSQQSPP--PHLRMKNKVSS---LTEYYAHKDDVLKTEKYPLL 262
            +                    +         + +V      ++    K   +  + +   
Sbjct: 716  YNNAPCGYHSLDSNGVFVQINNTELKWLGYTREQVIGKLKFSDIITPKGCQIFQQNFEEF 775

Query: 263  TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK-----------ESFEYLSHRNHPSL 311
                     + +    +   +        +++               + +  + R    +
Sbjct: 776  KQSGWVKGLEFEMVCADGKIFPVILNATAIKDADGKFIMSRSTIFDITEQQAALRERKQI 835

Query: 312  SAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
                 +   L    +D            G +   N +      Y +++ I        ++
Sbjct: 836  EQELQKTTTLQKAILDSANYTIISTTEDGTIVTFNAAAEKWLGYSAIEVIGKT--TPAII 893

Query: 371  DAPK------------LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
              P+            L         +     R           I+ +      +     
Sbjct: 894  HDPEEVVQKAQELSLELGRVIEPGFEVFVAKARLGEPDEGEWSYIRKDGSRFPVL-LSVT 952

Query: 419  EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
               N   +     GI  +    +  +R +     +L   LEA+ DG+   N E   +  +
Sbjct: 953  ALRNSQGQITGFLGIGSDITQRKQAERALRDSEERLQLALEASGDGLWDWNIETGEVYFS 1012

Query: 479  RAVSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
               +++ GY V ++      +   +       +   L   L        +      TK  
Sbjct: 1013 PRYAEMLGYRVNELPPNVTTWEGLVYPKDMIWVKEILDSHLKDSTTS-YDFDYRVRTKSG 1071

Query: 537  KLLSLRI---IIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
            +   +     ++ +           T  DIS+ K  + +L  AK+ A   +  KS FLA 
Sbjct: 1072 QWKWIADYGKVVARDGEGKPLRMLGTHKDISQRKHIELELQKAKETAIAANLSKSIFLAN 1131

Query: 592  VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
            +SHE+RTPL AI+GF++++         +  + E    I+RSG  +L +++D+LD+SKIE
Sbjct: 1132 MSHELRTPLNAILGFTQLLGRD---TSLSAYHQERLQIINRSGEHLLGLIDDILDLSKIE 1188

Query: 652  SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALN 710
            +G++ L      L   +     ++   A  K I +     +N+PR I  D + ++QI +N
Sbjct: 1189 TGQIALFLTDCDLSGLLLTVEEMLSPKAESKGIKLIIEKDDNLPRYIKIDSKKLRQILIN 1248

Query: 711  ILSNAIHFTPSGG-QIIISTTHTSNEEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
            +L+NAI FT  G   + ++ +    + VI    V DTGVG+   EL+   + F Q    +
Sbjct: 1249 LLNNAIKFTHQGTVTLRVNLSKIDQKAVIVKFIVEDTGVGIAADELDNLFQLFVQAEAGK 1308

Query: 768  QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            +I  +G+GLGL +++ +V    GK  + S   +G++     P+
Sbjct: 1309 KIN-QGSGLGLAISQKLVQLMGGKIEVNSILNQGSIFSFEIPV 1350



 Score =  141 bits (356), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 55/527 (10%), Positives = 136/527 (25%), Gaps = 47/527 (8%)

Query: 98  ISEELPKTIGNYAFKMIGMRLCDV--SDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGT 155
           ++       G    ++ G     +  S   + + +    +L  ++     +      + T
Sbjct: 481 VNSAFTYLFGYLPDEVYGQTTEMLYVSSEEYYEQDRKRFNLTAKEQNKPYEIRYRRKDST 540

Query: 156 NLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG-- 213
             +   +     +        GF   GIV       + +   K+   + + L+       
Sbjct: 541 IFFT--ETVGSSVKDNQENVIGF--VGIVRDISERKEAQETLKKYADEITDLYNNAPCGY 596

Query: 214 HSSVEKEKYDIFSQQSPPPHLRMKNKVSS---LTEYYAHKDDVLKTEKYPLLTSEESSLP 270
           HS      +   +          + +V     L +    K     ++ + LL    S   
Sbjct: 597 HSLDSNGVFIHINDTELTWLGYTREQVIGKVKLLDLLIPKSRKTFSQHFELLKQGYSINS 656

Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSK----ESFEYLSHRNHPSLSAYFDEGENLTPETV 326
            +      N    +       +Q+                 H        +  +   +  
Sbjct: 657 LELSMLRSNGTVMSIMLNVNPIQDTEGNFIMSRATLFDISEHKEAEKTLQKYADEITDLY 716

Query: 327 DKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
           +  P  +  + S+G     N + L    Y     I        +            +   
Sbjct: 717 NNAPCGYHSLDSNGVFVQINNTELKWLGYTREQVIGKLKFSDIITPKGCQIFQQNFEEFK 776

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
                            +         +        +   + +       +  + +   R
Sbjct: 777 ------QSGWVKGLEFEMVCADGKIFPVILNATAIKDADGKFIMSRSTIFDITEQQAALR 830

Query: 446 KMEIEVMQLC-------SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
           + +    +L        +IL++ +  I     +G I++ N A  K  GY   +++ K   
Sbjct: 831 ERKQIEQELQKTTTLQKAILDSANYTIISTTEDGTIVTFNAAAEKWLGYSAIEVIGKTTP 890

Query: 499 VFLEQNTPSVMNH-----YLTEILSLDLR---------QTLEKITLGSTKEEKLLSLRII 544
             +      V         L  ++              +  E       K+     + + 
Sbjct: 891 AIIHDPEEVVQKAQELSLELGRVIEPGFEVFVAKARLGEPDEGEWSYIRKDGSRFPVLLS 950

Query: 545 IKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
           +  L  S      +     DI++ KQ +  L  +++  +       D
Sbjct: 951 VTALRNSQGQITGFLGIGSDITQRKQAERALRDSEERLQLALEASGD 997



 Score = 94.3 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 33/253 (13%), Positives = 75/253 (29%), Gaps = 16/253 (6%)

Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM------LYRSDRTC 393
                N +F  L      + +  +  +S L  +    D+      +      LY      
Sbjct: 333 RFEGTNEAFFDLLSRDDREPLINSLQVSILNASEWQLDHQINDRWVSLMGKCLYDESGQA 392

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG-----IEPEDVDTRINKRKME 448
           I     +  I   +E  L +        N+  +   +       ++ E +     +  ++
Sbjct: 393 IQMIGIIKDITHRKETELKLKKFNDRLENRVNQRTAELREANHQLQEELLKRHQIEEALQ 452

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
            +  +  +I +A  D I   ++   I   N A + LFGY  +++  +   +    +    
Sbjct: 453 QKSAEFEAIFQAIPDAIIFADKTRHIQKVNSAFTYLFGYLPDEVYGQTTEMLYVSSEEYY 512

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEW 564
                         Q          K+  +     +   +  +      +   + DISE 
Sbjct: 513 EQDR-KRFNLTAKEQNKPYEIRYRRKDSTIFFTETVGSSVKDNQENVIGFVGIVRDISER 571

Query: 565 KQEKNKLSHAKKI 577
           K+ +  L      
Sbjct: 572 KEAQETLKKYADE 584



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 35/383 (9%), Positives = 94/383 (24%), Gaps = 17/383 (4%)

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
           + F  L         +   +  I +        ++ ++  SL     + +     +   +
Sbjct: 339 EAFFDLLSRDDREPLINSLQVSILNASEWQLDHQINDRWVSLMGKCLYDESGQAIQMIGI 398

Query: 262 -LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
                     E +     +  +    Q    L+  + +  E L  R+         +   
Sbjct: 399 IKDITHRKETELKLKKFNDRLENRVNQRTAELREANHQLQEELLKRHQI--EEALQQKSA 456

Query: 321 LTPETVDKCPIPFFVYSHGNLFY-ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
                    P               N +F  L  Y   +          L  + +     
Sbjct: 457 EFEAIFQAIPDAIIFADKTRHIQKVNSAFTYLFGYLPDEVYGQT--TEMLYVSSEEY-YE 513

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
             +      +         R    +           +     +     +   GI  +  +
Sbjct: 514 QDRKRFNLTAKEQNKPYEIR---YRRKDSTIFFTETVGSSVKDNQENVIGFVGIVRDISE 570

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK-PFT 498
            +  +  ++    ++  +      G   ++  G+ +  N       GY  E ++ K    
Sbjct: 571 RKEAQETLKKYADEITDLYNNAPCGYHSLDSNGVFIHINDTELTWLGYTREQVIGKVKLL 630

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM 558
             L   +    + +   +                     ++S+ + +  +  +    +  
Sbjct: 631 DLLIPKSRKTFSQHFELLKQG--YSINSLELSMLRSNGTVMSIMLNVNPIQDTEGNFIMS 688

Query: 559 H----DISEWKQEKNKLSHAKKI 577
                DISE K+ +  L      
Sbjct: 689 RATLFDISEHKEAEKTLQKYADE 711



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/166 (13%), Positives = 49/166 (29%), Gaps = 13/166 (7%)

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
           + D       ++    Q    +EA + G    N     +  +     L G          
Sbjct: 279 ERDRTSTNTALKQTQYQFQQAIEAANLGTWQWNLLNNNVILSPQAETLLGLQNCRFEGTN 338

Query: 497 --FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC- 553
             F   L ++    + + L   +       L+              + ++ K L   S  
Sbjct: 339 EAFFDLLSRDDREPLINSLQVSILNASEWQLDHQINDR-------WVSLMGKCLYDESGQ 391

Query: 554 ---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
                  + DI+  K+ + KL       E   + ++  L   +H++
Sbjct: 392 AIQMIGIIKDITHRKETELKLKKFNDRLENRVNQRTAELREANHQL 437


>gi|189424026|ref|YP_001951203.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189420285|gb|ACD94683.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 1245

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 130/770 (16%), Positives = 256/770 (33%), Gaps = 80/770 (10%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIG-------------------MRLCDVSDILHIDPNN 131
             G +   +    K +G  A +++G                     +      ++++P  
Sbjct: 72  PEGGISLFNRGAEKLLGYRADEVVGLLSPLRFHLAAEVAAAKAGCNITPDWFPIYVEPA- 130

Query: 132 HIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN 191
                  R  +   + T    +G    +P++L    I   +   +G+    +V   R   
Sbjct: 131 ------ARGESRKQEWTFVHKDGHQ--IPVELVVTAIC-EDGRITGY--LSMVTDIRERK 179

Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM----KNKVSSLTEYY 247
                 ++ ++K++ +  +      V +     F + +              +   +   
Sbjct: 180 QAEEQLRQSEQKYASMFHMMPDTVGVSRMSDGTFIEVNASFERATGWSKDELIGHSSLEI 239

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL--QNNSKESFEYLSH 305
              +  +++    ++ S+      +    T +  +     Y   +         F     
Sbjct: 240 GLWEPEVRSRTLDIVRSQGRLENHEFVMTTKSGEKRHALMYMAPIYINGEPCLYFIARDI 299

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAG 364
                               +   P   ++    G     N  F      K  + +    
Sbjct: 300 TEQVRADQNLKNERTRLYTLLQTIPDLIWLKDPGGAYLMCNSRFEQFFGAKEAEIVGK-- 357

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
                    +L+D           +    +        +     +   +  I     ++ 
Sbjct: 358 -TDYDFVDKELADFFREHDQKALAAAGASVNEEWVTFAV---DGHRELLETIKTPMRDEE 413

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSK 483
            + +   GI     D R  +  +     +   + E     + I  R    +L+ N A  +
Sbjct: 414 GKLIGVLGIARNITDIREAQENLRDSEQRYRHLFEQNPAPMLIYERGSFQLLAVNEAFLQ 473

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
            +GY  ED+ +              +      ++                K+   LS+  
Sbjct: 474 HYGYTPEDVTQLRLPDLYPAEEKERIIALANSLVGHANAG----EWHHCRKDGSRLSIVA 529

Query: 544 IIKKL--PFSSCYSLTMHDISEWKQEKNKLSHAKKI------------------AEKESS 583
               L     +     + DI+  KQ + +L+  +                    A+    
Sbjct: 530 TSHDLIYKGHTARVAVITDITARKQAEEELNRYRLHLEELVKTRTAELEAARDSAQAADQ 589

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
            KS+FLA +SHEIRTP+ A+IG   +       P    +  +Y      + + +L I++D
Sbjct: 590 AKSEFLANMSHEIRTPMNAVIGMIHLTLKTEMSP----KQRDYLRKAGFAADSLLGIIDD 645

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLR 702
           +LD SK+E+GK+ L      L E +    S+V + A+EK +      A  +P +++ D  
Sbjct: 646 ILDFSKVEAGKLELEQHQFLLSEVLDTVTSIVGIKAHEKGLEFLLKIAPEVPAQLIGDPL 705

Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTT---HTSNEEV--ILRVRDTGVGMTNYELEKAM 757
            + QI +N+ +NA+ FT  G +I +         N  V     VRD G+GMT  +L+K  
Sbjct: 706 RLGQILINLCNNAVKFTGQG-EIFVFIEQLDCRENNRVMLRFSVRDNGIGMTPEQLDKLF 764

Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
            PF Q   S   R  GTGLGL ++K +V    G+    S P KG++    
Sbjct: 765 TPFTQADASSTRRFGGTGLGLAISKQLVLLMGGEIGAESIPDKGSVFFFT 814



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/207 (13%), Positives = 66/207 (31%), Gaps = 19/207 (9%)

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459
           +       E+                       ++ +       ++ +      L ++++
Sbjct: 1   MRRRSDQPESWDEQRNRIIGLGEHSARKSYYPELKVQLQQLEEARKSLAKLNSFLQAVMD 60

Query: 460 ATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILR--KPFTVFLEQN----------TP 506
           A ++  + +I  EG I   NR   KL GY  ++++    P    L             TP
Sbjct: 61  AATEIAVIVITPEGGISLFNRGAEKLLGYRADEVVGLLSPLRFHLAAEVAAAKAGCNITP 120

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISE 563
                Y+      + R+   +      K+   + + +++  +        Y   + DI E
Sbjct: 121 DWFPIYVEPAARGESRK---QEWTFVHKDGHQIPVELVVTAICEDGRITGYLSMVTDIRE 177

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLA 590
            KQ + +L  +++          D + 
Sbjct: 178 RKQAEEQLRQSEQKYASMFHMMPDTVG 204



 Score = 65.8 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/250 (9%), Positives = 69/250 (27%), Gaps = 11/250 (4%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID--PNNHIGDLLKRQNT 142
             W  D  G     +    +  G    +++G    D  D    D    +    L     +
Sbjct: 326 LIWLKDPGGAYLMCNSRFEQFFGAKEAEIVGKTDYDFVDKELADFFREHDQKALAAAGAS 385

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
              +   + ++G      ++    P+     +  G  G  I        + +   +  ++
Sbjct: 386 VNEEWVTFAVDGH--RELLETIKTPMRDEEGKLIGVLG--IARNITDIREAQENLRDSEQ 441

Query: 203 KFSHLHEIKKGHSSV-EKEKYDIFSQQSPPPH--LRMKNKVSSLTEYYAHKDDVLKTEKY 259
           ++ HL E       + E+  + + +               V+ L     +  +  +    
Sbjct: 442 RYRHLFEQNPAPMLIYERGSFQLLAVNEAFLQHYGYTPEDVTQLRLPDLYPAEEKERIIA 501

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
              +    +   +      + ++ +       L    K     ++     +     +E  
Sbjct: 502 LANSLVGHANAGEWHHCRKDGSRLSIVATSHDL--IYKGHTARVAVITDITARKQAEEEL 559

Query: 320 NLTPETVDKC 329
           N     +++ 
Sbjct: 560 NRYRLHLEEL 569


>gi|17228319|ref|NP_484867.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17130169|dbj|BAB72781.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 1002

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 118/781 (15%), Positives = 268/781 (34%), Gaps = 83/781 (10%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK-RQNTWY 144
            W    +G L + +      +G+   + +      ++   ++     I + L+       
Sbjct: 22  LWR--KNGALIDANSTYAAILGSTVPETLNFNYWQITPENYLASERTILEQLEQTGCHQA 79

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNR----VDNDPRALGKRL 200
            +      +G    VP+ ++ + I  ++ E   +     +   R           + K+ 
Sbjct: 80  YEKEYLHQDGHL--VPVKVSTV-IIEKDGEKLMWSSVEDISNIRQAQKERQQSEKILKQS 136

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSP---PPHLRMKNKVSSLTEYYAHKDDVLKTE 257
           + ++  L         V   +   F  +           + +     +     D     E
Sbjct: 137 EARYRSLVTTNTQIIWVSSPEGICFELKDWIAYTGQTLAEAENGGWIDAVHPDDRGYTGE 196

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS----HRNHPSLSA 313
            + +  +  S    +      + N      +   +     +  E++       +     A
Sbjct: 197 AWGIAVANRSQYQIEYRIRGKDGNYRYFWVWGAPVIEEDGDVREWIGTCTDIHDRKLAEA 256

Query: 314 YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLL-TKYKSVDDIEIAGGLSTLLDA 372
                +      V       +  +      ++     +    +S  ++E  G L  +   
Sbjct: 257 ENQRLKERYRSLVTASSQIVWGTTPEGWGISSEMLTWIAYTGQSEAEVEGWGWLDPIHPD 316

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
            +     A    ++ R      +     + ++         +        Q        G
Sbjct: 317 DRTRSFEAWNASVVKR------SIYQTEYRLRGKDGTYRYFSVCGVPVLKQDGSIQEWIG 370

Query: 433 IEPEDVDTRINKRKME---------------------IEVMQLCSILEATSDGIAIINRE 471
              +  D ++ +  +                       E   L +IL+  +DG+ +++  
Sbjct: 371 TCTDIHDRKLAEMALRQLNHQLEARVAERTAALQNTLAEAQGLNAILDNLADGLLVVDTT 430

Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
           G I   N A   + G     +         ++     +   +    S         + L 
Sbjct: 431 GQITHYNPAFLAMHGLTATTLNGH-----YQELPIFGLADLIERTRSHPGEVFAADVALA 485

Query: 532 STKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
             +  + +   I  +     +      +L + D++  K+                  K+D
Sbjct: 486 KDRIGQAVGTAIFKRTDTKEAAACFGSALLIRDVTAEKEI--------------DKMKTD 531

Query: 588 FLARVSHEIRTPLTAIIGFS----EVIKNQRFGPLGNPRYI---------EYANYIDRSG 634
           F++ VSHE+RTPLT+++GF+    E ++   F  L               +  N I    
Sbjct: 532 FISTVSHELRTPLTSVLGFASIIQEKLQTDVFPVLSTEDRKLQKTIKRVGDNLNIIVSEA 591

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
             +  ++ND+LDI+K+E+GK+    +P++  E +  A +          + + T   + +
Sbjct: 592 ERLTSLINDVLDIAKMEAGKVEWQMQPINPGELLDWAANSTAALFETNGLQLLTEIESGL 651

Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELE 754
           P+I+ D   + Q+ +N++SNA+ FT  G  +        +  V + V DTGVG+   +  
Sbjct: 652 PQIIGDRNRLLQVLINLISNAVKFTEFGS-VTCRVKQDKDG-VCISVIDTGVGIAPEDQP 709

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           K  + F Q+ ++   + +GTGLGLP+ K +V+ + G+ ++ S P  G++     P+Y ++
Sbjct: 710 KVFEKFRQVGDTLTDKPKGTGLGLPICKQIVEHHGGRIWVESEPGHGSVFSFQIPIYASN 769

Query: 815 H 815
           H
Sbjct: 770 H 770



 Score = 60.0 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 51/131 (38%), Gaps = 4/131 (3%)

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
             + E    G+ +  + G ++  N   + + G  V + L   +     +N  +     L 
Sbjct: 10  RLLWEKCPVGLVLWRKNGALIDANSTYAAILGSTVPETLNFNYWQITPENYLASERTILE 69

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL--TMHDISEWKQEKNKLS 572
           ++      Q  EK  L    +  L+ +++    +       +  ++ DIS  +Q + +  
Sbjct: 70  QLEQTGCHQAYEKEYLHQ--DGHLVPVKVSTVIIEKDGEKLMWSSVEDISNIRQAQKERQ 127

Query: 573 HAKKIAEKESS 583
            ++KI ++  +
Sbjct: 128 QSEKILKQSEA 138


>gi|189423631|ref|YP_001950808.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189419890|gb|ACD94288.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 940

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 139/710 (19%), Positives = 244/710 (34%), Gaps = 35/710 (4%)

Query: 120 DVSDILHIDPNNHIGDLLKRQNTWYGKTTLW--PIEGTNLYVPIDLAALPIYSRNR--EF 175
            +  ++ I        L      +     +      G       DL    I         
Sbjct: 109 QIDALMDITRTPERDALFDFTRPYISIPHVLVGRKSGGFYRQESDLTGKRIALEKGFNNV 168

Query: 176 SGFRG-FGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL 234
           + FR  F  V V    +   AL      +     +   G+ +V +   +        P  
Sbjct: 169 TYFRNNFPAVTVREYGSTAEALKAVARGE----ADAYAGNRAVVQHLLEKLELNGLMPMG 224

Query: 235 RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294
            +    S L    A     L       L +  +          I     T+  Y   L  
Sbjct: 225 TLIAPRSVLQFGVAKGQTELLGILDKALAAIPAGERSAIADRWIPNPYETRIDYRKLLLA 284

Query: 295 NSKESFEYLSHRNH-PSLSAYFDEGENLTPETVDKCPIPFFVYSHGNL-FYANPSFLLLT 352
                            L+    + ++      +       + S   L    N  F  L 
Sbjct: 285 ALLVITLLAGLVLVTRRLNKRLQQQQDYWQALFEHNGTGNLIVSSERLMLKVNQQFCDLF 344

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
            Y+  + I  +  L  L             P  +   D      SA       +      
Sbjct: 345 GYREEELIGQSVRLLHLDQQH----YEGWAPTFMSVRDGKT-HLSAEYPMRHKDGSLFWC 399

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG 472
           +      +       +  + I  +  + +  ++ M      L   L+   +   +++   
Sbjct: 400 LFTGVRLQLPDGQRGVVWSAI--DITERKQAEQTM----ALLNFALDTIHEAAYLVDETT 453

Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
             +  N+   +  GY  E++L         +        +  E++       +    +  
Sbjct: 454 RFIFVNQEACRSTGYSREELLTMKIGDVDAEFPEDQWPVFWQELIRRRA---ITFEGMHK 510

Query: 533 TKEEKLLSLRIIIKKLP-FSSCY-SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
               +   + I           Y      DISE K+ +  L  AK+ AE  S  K++FLA
Sbjct: 511 DCSGRTYPVEITANYFEFDGQGYNLGLARDISERKKTEAVLQEAKERAEAASRAKTEFLA 570

Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650
            +SHEIRTP+  II  + +++             EY   +  S   +L +++D+LDISKI
Sbjct: 571 NMSHEIRTPMNGIISMAHLLRMTELTS----EQQEYLASLQISSKNLLALISDILDISKI 626

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIAL 709
           E+GK+ L +   S+   + E ++       +KR+ I T  ++ +P IL  D    KQI L
Sbjct: 627 EAGKLELEYADFSVRATIEEVVASQMPRITQKRLDICTELSDGLPEILLGDSLRFKQILL 686

Query: 710 NILSNAIHFTPSGGQIIIS--TTHTSNEEV-ILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
           N+L NAI FT  GG  I++  +    N+ +  + + DTG+GM+   LE+   PF Q  +S
Sbjct: 687 NLLGNAIKFTEQGGISIVAKPSARHDNQLIMRIMIADTGIGMSPEVLERVFSPFEQADSS 746

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
              +  GTGLGL + + +V+   G+ +  S P  G+   +  P      P
Sbjct: 747 TTRKYGGTGLGLSICRRLVELMGGRIWAASRPGSGSTFFVELPFVVREAP 796



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 55/507 (10%), Positives = 127/507 (25%), Gaps = 47/507 (9%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D       +++E  ++ G    +++ M++ DV      D        L R+     +  
Sbjct: 449 VDETTRFIFVNQEACRSTGYSREELLTMKIGDVDAEFPEDQWPVFWQELIRRRAITFEGM 508

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF--GIVHVNRVDNDPRALGKRLDKKFSH 206
                G    V I            EF G +G+  G+           A+ +   ++   
Sbjct: 509 HKDCSGRTYPVEITANY-------FEFDG-QGYNLGLARDISERKKTEAVLQEAKERAEA 560

Query: 207 LHEIKKGHSSVEKEKYDIF--SQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT- 263
               K    +    +         S    LRM    S   EY A      K     +   
Sbjct: 561 ASRAKTEFLANMSHEIRTPMNGIISMAHLLRMTELTSEQQEYLASLQISSKNLLALISDI 620

Query: 264 ---SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
              S+  +   + ++   ++    ++     +   +++  +  +  +         +   
Sbjct: 621 LDISKIEAGKLELEYADFSVRATIEEVVASQMPRITQKRLDICTELSDGLPEILLGDSLR 680

Query: 321 LTPETVDKCPIPFFVYSHGNLFYANPSFLLL-------TKYKSVDDIEIAGGLSTLLDAP 373
                ++           G +                               L  +    
Sbjct: 681 FKQILLNLLGNAIKFTEQGGISIVAKPSARHDNQLIMRIMIADTGIGMSPEVLERVFSPF 740

Query: 374 KLSDNNAIKP-----VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
           + +D++  +      + L    R       R+         S     +PF          
Sbjct: 741 EQADSSTTRKYGGTGLGLSICRRLVELMGGRIWAASRPGSGSTFFVELPFVVREAPAGTA 800

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQ-----LCSILEATSDGIAIINREGIILSTNRAVSK 483
            +    PE V        +  E  Q     + +IL  +   +  ++ +G      +A  +
Sbjct: 801 LRLECRPEPVPEGRPLVVLLAEDNQINARSMSAILTRSGHRVVTVD-DGQ-----KAFEQ 854

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
                 + IL     V +           + +        T          +     L  
Sbjct: 855 WHSNRWDCILM---DVQMPVMDGVEATRLIRQAEQASGSHTPVIALTAHAMQGDREWLMA 911

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNK 570
                     Y     D+ +  +E  +
Sbjct: 912 -----EGFDGYVAKPVDVEQLFREIEQ 933



 Score = 42.3 bits (98), Expect = 0.36,   Method: Composition-based stats.
 Identities = 15/238 (6%), Positives = 49/238 (20%), Gaps = 12/238 (5%)

Query: 98  ISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH---IGDLLKRQNTWYGKTTLWPIEG 154
           ++++     G    ++IG  +  +  +              +   +     +  +   +G
Sbjct: 336 VNQQFCDLFGYREEELIGQSVR-LLHLDQQHYEGWAPTFMSVRDGKTHLSAEYPMRHKDG 394

Query: 155 TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214
           +          + +   + +  G     I                L+     +HE     
Sbjct: 395 SLF--WCLFTGVRLQLPDGQ-RGVVWSAI--DITERKQAEQTMALLNFALDTIHEAAYLV 449

Query: 215 SSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQED 274
               +  +          + R +     + +  A   +    +                +
Sbjct: 450 DETTRFIFVNQEACRSTGYSREELLTMKIGDVDAEFPED---QWPVFWQELIRRRAITFE 506

Query: 275 FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP 332
               + +  T                  L      S     +       E  +     
Sbjct: 507 GMHKDCSGRTYPVEITANYFEFDGQGYNLGLARDISERKKTEAVLQEAKERAEAASRA 564


>gi|126656209|ref|ZP_01727593.1| Multi-sensor Signal Transduction Histidine Kinase [Cyanothece sp.
            CCY0110]
 gi|126622489|gb|EAZ93195.1| Multi-sensor Signal Transduction Histidine Kinase [Cyanothece sp.
            CCY0110]
          Length = 1565

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 124/748 (16%), Positives = 255/748 (34%), Gaps = 49/748 (6%)

Query: 85   FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144
            F       G    ++E   +     A  +IG     V      +      + L ++N   
Sbjct: 833  FISRFLPDGTTLFVNEAYCRYFSINASDIIGKNYQPVIYEPDQEQVREQVNSLSKENPIT 892

Query: 145  GKTTLWPIEGTNLYV-PIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                   + G   +   I+     ++     F  ++  G     +   +  AL      +
Sbjct: 893  LIENRIVVNGEIRWTQWIN---RMLFDEQGNFIEYQSVG--RDIQELKEAEALLAEEVSR 947

Query: 204  FSHLHEIKKGHSSVEKEKYDIFSQQSPPP--HLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
             + L +       V   +  +    +           + + L       +   +  +  +
Sbjct: 948  SNTLFDSSIDGIVVIDHQGYVIRSNASFSRMLGYTPEETAKLHLRDWEANYTPEEIEQKI 1007

Query: 262  LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ--NNSKESFEYLSHRNHPSLSAYFDEGE 319
              S+      +      + + Y  +     ++  N   +        +     A     E
Sbjct: 1008 AESDLCKDIFETRHRRKDGSIYDVEISATPVRWGNEIVQLCICRDISDRKEAEAALLRSE 1067

Query: 320  NLTPETVDKCPIPFF---VYSHG--NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
                  V   P   +   +Y  G     Y +P    L + +             ++    
Sbjct: 1068 ARYQNLVVTVPGVIYDYVIYPDGSERFAYISPRCRELLETEPDILKRDFSVFWGMVHPQD 1127

Query: 375  LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
            L      K   L          S  +  I  + +              Q       +GI 
Sbjct: 1128 LPIILQSKEYSL----DNNECFSTEIRIILPSGQIKWIKKTSQPSSKPQADGGRRWSGIM 1183

Query: 435  PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
             +  D +  +  +E    +  S  E    G+ +I+ EG  L  N+A   + GY  +++L 
Sbjct: 1184 IDISDRKRIELALEESEERFRSAFENAGIGMVLISLEGEFLKVNQAFCGMLGYSEQELLL 1243

Query: 495  KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-- 552
            K F      +  ++ N  L ++ S    +T +           ++   + I  +      
Sbjct: 1244 KNFQEITHPDDLTMSNKGLQQL-SSGQIKTYQMEKRYIVASGSIIWCSVTISSIKDQDQH 1302

Query: 553  --CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
               +   + DI+E +              +    K++F++ VSHE+RTPLT++ G    +
Sbjct: 1303 PLYFVTQVQDITERR--------------ELDRLKTEFISVVSHELRTPLTSMRGAL-GL 1347

Query: 611  KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
             +                 + R+ + ++ +VND+L++ ++ESGK+ L  E   +D  +++
Sbjct: 1348 LDSGVLREEPETVEHMLQIVLRNCDRLIRLVNDILNLERLESGKVQLIKEACEVDHLLTD 1407

Query: 671  AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
            A+  V   A E  I I     +    + A   ++ QI  N+LSNAI F P G  + ++  
Sbjct: 1408 AVETVSAMAMEASINI--ELTSISAHVWASYDAIIQILTNLLSNAIKFAPEGTTVWLTAQ 1465

Query: 731  HTSNEE--------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
               + +        V+  V+D G G+   +L      F Q+  S   +  GTGLGL + +
Sbjct: 1466 LFDDPDSTDRATSFVLFSVKDQGRGIPTNKLTTIFGRFQQVDASDARQKAGTGLGLAICQ 1525

Query: 783  AMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            +++  + G+ ++ S   +G+      PL
Sbjct: 1526 SIIQQHNGRIWVDSILGEGSTFYFTLPL 1553



 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 60/543 (11%), Positives = 164/543 (30%), Gaps = 44/543 (8%)

Query: 54  FTDQNQESVSNTNYLDSENTFVFDPIPR--TVRFTWNIDAHGYLKEISEELPKTIGNYAF 111
              Q Q+S+  T      +   F  I R        N   +G + E+++   +  G    
Sbjct: 418 TASQLQQSLRRTETALKASQKKFTTIFRMSPDPIMINYCENGRILEVNDRFIEFSGYSYD 477

Query: 112 KMIGMRLCDVSDILHIDPNNHIGDLLKR-QNTWYGKTTLWPIEGTNLYVPIDLAALPIYS 170
           ++ G    +++   ++  + +  +LL++   T+  +       G      + L+A     
Sbjct: 478 ELTGHTPLELNLFPNVQQHRNFQELLQKIGFTYSQEIAFRVKSGE--VKTVLLSAENHCI 535

Query: 171 RNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP 230
             +E+                      K   KK + + +         +   D   + + 
Sbjct: 536 EQQEYI----IVTFRDITESKQLELALKDSRKKLNQILDNTFASIFSFRLFDDQTWEYNY 591

Query: 231 -----------PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTIN 279
                       P   M ++    +       + +    +    +E++ +  +  F   N
Sbjct: 592 QSIGSLILFGYTPQEIMADQGLWASRIVPEDHETIILPLFERFKTEDT-ITVEYRFRHKN 650

Query: 280 LNQYTKKQYFGTLQNNSKESF----EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV 335
            +       + + ++ + +++      +   +   + +   + ++L     +      F+
Sbjct: 651 DSIRWIATTYTSYRDPTIDAWIVTGVSIDISDRKQIESELQQQKDLRESIFENSSDAIFL 710

Query: 336 YSHGN--LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393
               +  +   N   + L +    DD+         L     +D    + +         
Sbjct: 711 VDPQSSLIIDCNHRLVELFEVVCKDDLIDIEW--HTLQKQLFTDEEVEEIITQIEVKGF- 767

Query: 394 IAASARLHTIQWNRENSLA-MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
                 +  I +        +T       NQ    +       +  + +  + K++    
Sbjct: 768 --WEKEIEYITFKGHEFWGNLTAKLIIVNNQIIHLVRV----TDITERKQAQIKLQKSEA 821

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
           +   I++  ++ I+    +G  L  N A  + F     DI+ K +   + +     +   
Sbjct: 822 RYRGIVQDQTEFISRFLPDGTTLFVNEAYCRYFSINASDIIGKNYQPVIYEPDQEQVREQ 881

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEK 568
           +  +   +    +E   +      ++   + I + L         Y     DI E K+ +
Sbjct: 882 VNSLSKENPITLIENRIVV---NGEIRWTQWINRMLFDEQGNFIEYQSVGRDIQELKEAE 938

Query: 569 NKL 571
             L
Sbjct: 939 ALL 941



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 53/416 (12%), Positives = 127/416 (30%), Gaps = 21/416 (5%)

Query: 191 NDPRALGKRLDKKFSHLHEIKKGHS---SVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247
                  K   KKF+ +  +          E  +    + +         ++++  T   
Sbjct: 427 RRTETALKASQKKFTTIFRMSPDPIMINYCENGRILEVNDRFIEFSGYSYDELTGHTPLE 486

Query: 248 AHKDDVLKTEK--YPLLTSEESSLPEQEDFHTINLNQYTK--KQYFGTLQNNSKESFEYL 303
            +    ++  +    LL     +  ++  F   +    T         ++        + 
Sbjct: 487 LNLFPNVQQHRNFQELLQKIGFTYSQEIAFRVKSGEVKTVLLSAENHCIEQQEYIIVTFR 546

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-----NLFYANPSFLLLTKYKSVD 358
                  L     +      + +D      F +           Y +   L+L  Y   +
Sbjct: 547 DITESKQLELALKDSRKKLNQILDNTFASIFSFRLFDDQTWEYNYQSIGSLILFGYTPQE 606

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
            I    GL      P+  +   + P+         I    R    +   ++   +     
Sbjct: 607 -IMADQGLWASRIVPEDHETIIL-PLFERFKTEDTITVEYRF---RHKNDSIRWIATTYT 661

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI-ILST 477
              +   +     G+  +  D +  + +++ +     SI E +SD I +++ +   I+  
Sbjct: 662 SYRDPTIDAWIVTGVSIDISDRKQIESELQQQKDLRESIFENSSDAIFLVDPQSSLIIDC 721

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
           N  + +LF    +D L         Q            I  ++++   EK     T +  
Sbjct: 722 NHRLVELFEVVCKDDLI-DIEWHTLQKQLFTDEEVEEIITQIEVKGFWEKEIEYITFKGH 780

Query: 538 LLSLRIIIKKLPFSSCYSLTMH--DISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
                +  K +  ++     +   DI+E KQ + KL  ++         +++F++R
Sbjct: 781 EFWGNLTAKLIIVNNQIIHLVRVTDITERKQAQIKLQKSEARYRGIVQDQTEFISR 836


>gi|298244840|ref|ZP_06968646.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
            racemifer DSM 44963]
 gi|297552321|gb|EFH86186.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
            racemifer DSM 44963]
          Length = 1110

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 115/771 (14%), Positives = 243/771 (31%), Gaps = 46/771 (5%)

Query: 55   TDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI 114
            TD   +  +     +S             +  W     G+ +  ++           ++ 
Sbjct: 365  TDIEDQKRAEQQLKESRENLRVLAETVP-QLVWATRPDGWSEYFNQRFCDYTHATWEQLY 423

Query: 115  GMRLCDVSDILHIDPNNHIGD-LLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNR 173
            G            +    + +   +    +           T LY      A+P+     
Sbjct: 424  GYGWRQFLHPDDYERTLAVREHAFRTGVPYE-VEFRLREGQTGLYHWFLARAMPMRDETG 482

Query: 174  EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP--- 230
            +    + FG               K   +    L E       V +              
Sbjct: 483  QIV--KWFGTCTDIDEQKQAEQQLKESRESLRVLAETVPQFVWVTRPDGLHEYVNQRWRD 540

Query: 231  ----PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKK 286
                       ++ + L   +       +      L +      E+   +          
Sbjct: 541  YTGLTLEQMQSDRWAYLQFIHPEDRQRHRAHWQHALDTGIMYEHEERIKNGQTGEYRWFL 600

Query: 287  QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE----TVDKCPIPFFVYS-HGNL 341
                 +++++ +  ++             ++    + E      +  P   +     G  
Sbjct: 601  ARGMPVRDDAGQIVKWFGTCTDIEDQKRAEQQLKESEENWRVLAEMVPHFMWTALPSGQF 660

Query: 342  FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401
             Y N  +        +  ++        L  P   D N                   RL 
Sbjct: 661  EYFNQRWFDYIGLT-LKQLQNDRWAYLQLIHPDDRDGNRA-IWQHALDTGDMFEYEERLR 718

Query: 402  TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
              Q                 ++  + +   G   +  D +  +  +     +   ++ + 
Sbjct: 719  NGQS--GEYHWFLLRAMPVRDEAGQIIKWFGTCTDIDDRKRAEEALRQSQERASILMNSN 776

Query: 462  SDGIAIINREGIILSTNRAVSKLFGYPVEDILRK--PFTVFLEQNTPSVMNHYLTEILSL 519
              GI +I  E  I+  N     + GY  ED+  +             +       E+ + 
Sbjct: 777  IIGIKVIEGE-QIVDANDTFMHMTGYTREDLRERHMNLLHMTAPEYLARTLEAHQELAAQ 835

Query: 520  DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH-DISEWKQEKNKLSHAKKIA 578
                  EK  +   K+   L + +    L      ++    D S  K+ + +        
Sbjct: 836  QSLTPYEKEYVC--KDGSRLPVLVGGIALEHHPRQAICFVLDNSARKELEQR-------- 885

Query: 579  EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
                  K DF++  SHE+R PLTA +     + +++    G        + ++   N + 
Sbjct: 886  ------KDDFISMASHELRNPLTA-LALHTNLLHRQLARHGTLDQAPALSGMETQINKIS 938

Query: 639  DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
             +V +LLD+SK+++G++    E + LD  + E    +Q      RIL+  +   ++   L
Sbjct: 939  RLVEELLDVSKMQAGRLEYREEMIDLDALLREIADTMQQTHPSHRILVGGAVRTSL---L 995

Query: 699  ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
            AD   + Q+ +N+LSNAI ++P    + +  + +  E V +RV+D G+G+   + +K  +
Sbjct: 996  ADRDRLGQVFINLLSNAIKYSPGAETVEMDLSAS-REMVTIRVQDHGLGIPREQCDKIFE 1054

Query: 759  PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             F +   S+Q    G G+GL +   +V  + G   + S   KG+   +IFP
Sbjct: 1055 RFYRATGSRQRAIPGLGMGLYIVAEIVKHHGGSITVDSEVGKGSTFTVIFP 1105



 Score =  135 bits (340), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 52/543 (9%), Positives = 131/543 (24%), Gaps = 35/543 (6%)

Query: 57  QNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGM 116
           +  E ++              P      F   +D    +   +       G    +++G 
Sbjct: 5   KPTERLTPALSETLLTLLETLPGAL---FV--VDDAATIVYANASAQTLTGATRGELLGK 59

Query: 117 R-LCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPI--DLAALPIYSRNR 173
                   ++       I    + +        + P++ T L+V +   +  L +     
Sbjct: 60  PLWRGAPHLVSTVLYQAIQRTTQTRAP-TEVEYVSPVKETWLHVQLAPTVRGLIVQVHQG 118

Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH 233
                          +   P   G+ L  +       + G  + E    +I         
Sbjct: 119 -----------RAAALREAPVPQGEYLSIEDLDGLYSRIGVLTPEGIVLEINEVPLAEAQ 167

Query: 234 LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293
           +R +  +               ++         +S  E   F  +   +     +     
Sbjct: 168 IRREEVLGYPLTETRWWSFYPTSQAQLRAAIARASRGETVRFEAVVHPREGMDCHLDVAI 227

Query: 294 NNSKESFEYLS-HRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLL 351
           +   ++  +++               E      +D  P   +     G++ Y N      
Sbjct: 228 STRMDADHHIAYLVIAGIDITARKRAEAEIHAVIDAIPQLVWTGQPDGSIDYYNRRLCDY 287

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411
           +   + +  +  G L  L                          A  RL           
Sbjct: 288 SGQSTEEA-QGEGWLQCLHPED---RQRVRSAWQRAVQTGGVYEAELRLRQSTT--GEYR 341

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471
                     ++  + +   G   +  D +  +++++     L  + E     +     +
Sbjct: 342 WFLVRAMPVRDEAGQIVRWFGTCTDIEDQKRAEQQLKESRENLRVLAETVPQLVWATRPD 401

Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
           G     N+          E +    +  FL  +                +    E     
Sbjct: 402 GWSEYFNQRFCDYTHATWEQLYGYGWRQFLHPDDYERTLAVREHAFRTGVP--YEVEFRL 459

Query: 532 STKE-EKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
              +             +   +     +  T  DI E KQ + +L  +++     +    
Sbjct: 460 REGQTGLYHWFLARAMPMRDETGQIVKWFGTCTDIDEQKQAEQQLKESRESLRVLAETVP 519

Query: 587 DFL 589
            F+
Sbjct: 520 QFV 522



 Score = 60.0 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/277 (11%), Positives = 66/277 (23%), Gaps = 28/277 (10%)

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIA 363
             N                  ++  P   FV      + YAN S   LT     + +   
Sbjct: 1   MPNPKPTERLTPALSETLLTLLETLPGALFVVDDAATIVYANASAQTLTGATRGELLGKP 60

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
                    P L      + +      R                     +          
Sbjct: 61  LWRGA----PHLVSTVLYQAIQRTTQTRAPTEVEYVSPV------KETWLHVQLAPTVRG 110

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
               + Q                + IE       L+     I ++  EGI+L  N     
Sbjct: 111 LIVQVHQGRAAALREAPVPQGEYLSIED------LDGLYSRIGVLTPEGIVLEINEVPLA 164

Query: 484 LFGYPVEDILRKPF----TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
                 E++L  P            + + +   +         +T+    +   +E    
Sbjct: 165 EAQIRREEVLGYPLTETRWWSFYPTSQAQLRAAIARASRG---ETVRFEAVVHPREGMDC 221

Query: 540 SLRIIIKKLPFSSCYSLTMH----DISEWKQEKNKLS 572
            L + I     +  +   +     DI+  K+ + ++ 
Sbjct: 222 HLDVAISTRMDADHHIAYLVIAGIDITARKRAEAEIH 258


>gi|294494969|ref|YP_003541462.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
 gi|292665968|gb|ADE35817.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
          Length = 625

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 122/528 (23%), Positives = 223/528 (42%), Gaps = 26/528 (4%)

Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFD----EGENLTPETVDKCPIPFFV-YSHGNLFY 343
              L       + Y+      +     +    +  +L    +    +   V    G + Y
Sbjct: 111 ISPLFTEKSRIYGYMGIIRDITEEKQNEDSLVKELDLLTGLIGTARVIVTVLDRQGKIVY 170

Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403
            NP    +T YK + +I+     S  +    + +   I+ V               ++ I
Sbjct: 171 CNPHTEKITGYK-LKEIKGDDWFSRFIP---VREKERIRSVFKKAICGH--PTKGNVNPI 224

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
                  + + +      N   E      I  +       +        +L +I E    
Sbjct: 225 DTKEGKEIIVEWYDTALKNDEGEVTGLLSIGNDITQRVEAE-------EKLKTIYENMPG 277

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
           GI +I ++ II   N    ++ GY  E+++ +   +   + + S               +
Sbjct: 278 GILMIGQDYIIKDVNYRTCEITGYKREELVGQLCDIVCPKGSSSKQCPIWE----DGQEE 333

Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLP--FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE 581
                T    K      +    +++     +       DIS+ K  +     AKK AE+ 
Sbjct: 334 FRGMDTSIKCKNGIKKPILKNAQEITIKGDTYILELFQDISQRKNAEENAIEAKKAAEQA 393

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
           +  KS+FLA +SHE+RTPL ++IGFS+++  +  G L N    +Y + I +SG+ +L ++
Sbjct: 394 NQTKSEFLANMSHELRTPLNSVIGFSDILSKEVRGKL-NDSQKKYVSNITKSGSHLLSLI 452

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701
           ND+LD+SKIE+G+  L +    L EA+ E   L++   ++K I ++        R+ AD 
Sbjct: 453 NDILDLSKIEAGQKQLEYSSFDLHEALDEISILIKPLISKKNIDLQMDLPPEDSRVYADR 512

Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761
           +  KQI  N+LSNA  FTP  G I I   +   +++ + V+DTG+G+   +     +PF 
Sbjct: 513 KKFKQIMYNLLSNASKFTPDKGTITI-VANQEKDKLKVAVQDTGMGIPEADQATIFEPFQ 571

Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           Q+ +++    +GTGLGL LA+ +V+ + G+  + S    G+      P
Sbjct: 572 QVKSAKSSEYKGTGLGLSLARELVEMHGGQVGLKSEVGMGSTFTFTIP 619



 Score = 86.6 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/262 (9%), Positives = 75/262 (28%), Gaps = 11/262 (4%)

Query: 319 ENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
             +  + +          +    + + N S   +  +     +    G    +   +   
Sbjct: 19  SKIFADMIQHSTDAIIYTTPDFTINFVNRSAEEMFGWT----LPEIKGKPITILHDQELT 74

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
           +   K +          A        + +                +        GI  + 
Sbjct: 75  SQQKKEMFSNLYSGK--AHEIEGSRKRKDGSTFYCQ-IKISPLFTEKSRIYGYMGIIRDI 131

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP- 496
            + + N+  +  E+  L  ++      + +++R+G I+  N    K+ GY +++I     
Sbjct: 132 TEEKQNEDSLVKELDLLTGLIGTARVIVTVLDRQGKIVYCNPHTEKITGYKLKEIKGDDW 191

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CY 554
           F+ F+       +     + +     +           +E ++       K         
Sbjct: 192 FSRFIPVREKERIRSVFKKAICGHPTKGNVNPIDTKEGKEIIVEWYDTALKNDEGEVTGL 251

Query: 555 SLTMHDISEWKQEKNKLSHAKK 576
               +DI++  + + KL    +
Sbjct: 252 LSIGNDITQRVEAEEKLKTIYE 273



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 36/387 (9%), Positives = 98/387 (25%), Gaps = 25/387 (6%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI--DPNNHIGDLLKRQNTWYGKTT 148
               +  ++    +  G    ++ G  +  +     +       +   L        + +
Sbjct: 38  PDFTINFVNRSAEEMFGWTLPEIKGKPIT-ILHDQELTSQQKKEMFSNLYSGKAHEIEGS 96

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +G+  Y  I ++  P+++      G+ G  I+     +        +     + L 
Sbjct: 97  RKRKDGSTFYCQIKIS--PLFTEKSRIYGYMG--IIRDITEEKQNEDSLVKELDLLTGLI 152

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLR-----MKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
              +   +V   +  I         +              + +   ++       +    
Sbjct: 153 GTARVIVTVLDRQGKIVYCNPHTEKITGYKLKEIKGDDWFSRFIPVREKERIRSVFKKAI 212

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
               +        T    +   + Y   L+N+  E    LS  N  +     +E      
Sbjct: 213 CGHPTKGNVNPIDTKEGKEIIVEWYDTALKNDEGEVTGLLSIGNDITQRVEAEE---KLK 269

Query: 324 ETVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSVDDIEI------AGGLSTLLDAPKLS 376
              +  P    +     +    N     +T YK  + +          G S+        
Sbjct: 270 TIYENMPGGILMIGQDYIIKDVNYRTCEITGYKREELVGQLCDIVCPKGSSSKQCPIWED 329

Query: 377 DNNAIKPV--MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
                + +   +   +            I    +  +   F    +     EN  +    
Sbjct: 330 GQEEFRGMDTSIKCKNGIKKPILKNAQEITIKGDTYILELFQDISQRKNAEENAIEAKKA 389

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEAT 461
            E  +   ++  +     +L + L + 
Sbjct: 390 AEQANQTKSEF-LANMSHELRTPLNSV 415


>gi|307152832|ref|YP_003888216.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7822]
 gi|306983060|gb|ADN14941.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7822]
          Length = 1214

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 115/855 (13%), Positives = 262/855 (30%), Gaps = 112/855 (13%)

Query: 28   KKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTW 87
            K + +G     +   +       +           + T                     +
Sbjct: 397  KTLSDGRRVRITMALDVTQRKEAEMALQASEARYATLTELAPVG--------------IF 442

Query: 88   NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQNTWYGK 146
            + D+ G    I++      G    + +G                      + +   +Y +
Sbjct: 443  HTDSEGNCIYINQHWCAITGLSTAEAMGTGWLKALHSEDQQRVTATWIRAVAKNTAFYLE 502

Query: 147  TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                   G      +   A+P  + + E  G+   G +       +      + +++F  
Sbjct: 503  YRFQNPNGKI--TWVVGQAIPQITPSGEVLGY--IGTITDISTLKEAELALSQSEERFRQ 558

Query: 207  LHEIKKGHSSVEKEKYDIFSQQSPPPHL------RMKNKVSSLTEYYAHKDDVLKTEKYP 260
                     ++  E   +         +       +      + + Y      ++     
Sbjct: 559  AVLNAPVPIAIHAEDGTVLQISRAWSDITGYTLEDIPTVADWIEKAYRTNQQKIQANVER 618

Query: 261  LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
            L    E     +    T N      + Y   L   S      +S     +     +    
Sbjct: 619  LYGLTEPIAEGEYIITTKNGVTRIWEFYSTGLGRLSDGRRTVISTALDVTERKKVELQLK 678

Query: 321  LTPE---------------------------------TVDKCPIPFFVYSH-------GN 340
               +                                   ++  +    +         G 
Sbjct: 679  QAKQNLEIRVAARTTELQQANEQLLQELSEKLQTQKILAEQAQLLDLAHDTILTRDLEGT 738

Query: 341  LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400
            + + N     +  + S++ +     +      P+       +       +          
Sbjct: 739  ILFWNQGAEKMYGFSSLEAVGQHSNVLLNTVFPEPYSQILSQLFAQDYWEGELRH----- 793

Query: 401  HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
               Q      + +      + ++         I  +    +  +  ++    +  S+ E+
Sbjct: 794  ---QKLDGTEIIVASRWVLQRDKAGNPSKILEINNDITLRKRAEEALQDNEAKFRSLSES 850

Query: 461  TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS-VMNHYLTEILSL 519
            +  GI + +  G +L TN    ++ G   E++L + +  F+       +++ +LT +   
Sbjct: 851  SPIGIFLTDTHGRVLYTNPRYQEIVGGTAEEVLGEGWKQFIHPEDLENIVSEWLTHLEKQ 910

Query: 520  DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKI 577
                  +        E +   +              +  T+ DI+E +  +         
Sbjct: 911  KNSFYPQVRYCHKNTEIRYTQVHTAAIFTERGQLTGFVGTVEDITERRLIE--------- 961

Query: 578  AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
                   K DF++ VSHE+R PLTAI G   ++    +      +  +           +
Sbjct: 962  -----QMKKDFISVVSHELRIPLTAIHGSLGLLAAGVYDNKP-EKGKKMLQIAATQTERL 1015

Query: 638  LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697
            + +VND+LD+ ++ESGK++L  +P  + + + +A  L++  A E +I +  S      ++
Sbjct: 1016 VKLVNDILDLGRLESGKLHLVIQPCEVAQLLEQAAELMRPKAAENQITL--SVTPIDVQV 1073

Query: 698  LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-------------------EVI 738
             AD  S+ Q   N+LSNAI F+     I ++    S+                     V+
Sbjct: 1074 WADFDSIMQTLTNLLSNAIKFSLPKSTISVNAELISSHDKIAIWQQKRPSLASLSVPYVL 1133

Query: 739  LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
             +V+D G G+   +LE   + F Q+  +      G GLGL + + +++   G+ +  S  
Sbjct: 1134 FQVKDQGRGIPRNQLELIFEKFQQVDATDSRDKGGAGLGLAICRLIIEQQGGQIWAESVL 1193

Query: 799  AKGTLIEIIFPLYDT 813
             +G+       LY+T
Sbjct: 1194 GEGSSFYFTLQLYET 1208



 Score =  116 bits (290), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 57/464 (12%), Positives = 117/464 (25%), Gaps = 36/464 (7%)

Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFS------------QQSPPPH 233
                     L +  +++F            +  E  +I               Q  P  
Sbjct: 284 EIEDRKQLEQLLRESEERFRQAIYEAPLPILIHAEDGEILQINWAWSEISGYQPQEIPTL 343

Query: 234 LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293
                KV                +    +   E +L  ++    I        +      
Sbjct: 344 SAWVQKVYGDNYERFRNYIRQLFQLNQRVNEGEHTLINRQGKTLIWDYYSAPLKTLSD-- 401

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLT 352
                    L               E       +  P+  F     GN  Y N  +  +T
Sbjct: 402 GRRVRITMALDVTQRKEAEMALQASEARYATLTELAPVGIFHTDSEGNCIYINQHWCAIT 461

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
              + + +   G L  L    +          +   +  T      R             
Sbjct: 462 GLSTAEAM-GTGWLKALHSEDQ---QRVTATWIRAVAKNTAFYLEYRFQN---PNGKITW 514

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG 472
           +      +     E +   G   +    +  +  +     +    +      IAI   +G
Sbjct: 515 VVGQAIPQITPSGEVLGYIGTITDISTLKEAELALSQSEERFRQAVLNAPVPIAIHAEDG 574

Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
            +L  +RA S + GY +EDI      +     T         E L        E   + +
Sbjct: 575 TVLQISRAWSDITGYTLEDIPTVADWIEKAYRTNQQKIQANVERLYGLTEPIAEGEYIIT 634

Query: 533 TKEE--KLLSLRII-IKKLPFSSCYSL-TMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
           TK    ++       + +L       + T  D++E K+ + +L  AK+  E   + ++  
Sbjct: 635 TKNGVTRIWEFYSTGLGRLSDGRRTVISTALDVTERKKVELQLKQAKQNLEIRVAARTT- 693

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
                 E++    A     + +  +           +  +    
Sbjct: 694 ------ELQQ---ANEQLLQELSEKLQTQKILAEQAQLLDLAHD 728



 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 37/320 (11%), Positives = 96/320 (30%), Gaps = 13/320 (4%)

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
           +    +ED    N     + Q           + E     +   L     E E    + +
Sbjct: 248 ARYQAEEDLQQTNEQLEARIQQRTAQLTQLNINLEN-EIEDRKQLEQLLRESEERFRQAI 306

Query: 327 DKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
            + P+P  ++   G +   N ++  ++ Y+  +   ++  +  +         N I+ + 
Sbjct: 307 YEAPLPILIHAEDGEILQINWAWSEISGYQPQEIPTLSAWVQKVYGDNYERFRNYIRQLF 366

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
                      +   HT+   +  +L   +              +  +  +    +  + 
Sbjct: 367 QLNQR-----VNEGEHTLINRQGKTLIWDYYSAPLKTLSDGRRVRITMALDVTQRKEAEM 421

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            ++    +  ++ E    GI   + EG  +  N+    + G    + +   +   L    
Sbjct: 422 ALQASEARYATLTELAPVGIFHTDSEGNCIYINQHWCAITGLSTAEAMGTGWLKALHSED 481

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI----IIKKLPFSSCYSLTMHDI 561
              +       ++ +    L           K+  +       I        Y  T+ DI
Sbjct: 482 QQRVTATWIRAVAKNTAFYL--EYRFQNPNGKITWVVGQAIPQITPSGEVLGYIGTITDI 539

Query: 562 SEWKQEKNKLSHAKKIAEKE 581
           S  K+ +  LS +++   + 
Sbjct: 540 STLKEAELALSQSEERFRQA 559


>gi|268318298|ref|YP_003292017.1| multi-sensor signal transduction histidine kinase [Rhodothermus
           marinus DSM 4252]
 gi|262335832|gb|ACY49629.1| multi-sensor signal transduction histidine kinase [Rhodothermus
           marinus DSM 4252]
          Length = 785

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 138/766 (18%), Positives = 279/766 (36%), Gaps = 68/766 (8%)

Query: 93  GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPI 152
           G L + +    + IG     + GM   ++      +    I +          +  +   
Sbjct: 31  GRLLDANPRACELIGRTRDAIRGMHHLELHPREERERYRAIFEHRAEAGRGIDRAEVVHR 90

Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212
           +GT   +P++++A      +R        GI    R  ++        +  +  L E   
Sbjct: 91  DGT--RIPVEISAARTTLGDRPVL----IGIFRDLRPRHELEQKLHEAESHYRILAEQNL 144

Query: 213 G---HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD--VLKTEKYPLLTSEES 267
                    +  Y          + R ++ +        H +D   +       L+ E  
Sbjct: 145 IGVYLVQDGRFVYVNQYIADFLGYERPEDLIGRSLVELVHPEDLPAVTANIQKRLSGEMR 204

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTL--QNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
           ++                +        +         L        + +++    +  + 
Sbjct: 205 TVHYSLRGFHRQGYLVEVEVIGSATTYRGRPAVLGVMLHTSEARRQARFYETESRILQDL 264

Query: 326 VDKCPIPFFVY----------------------------------SHGNLFYANPSFLLL 351
           +   P    +                                    +  L         +
Sbjct: 265 LRGAPQAALLDALCTAIEARLPDGICTILLLCEGRLYRGASHMPPEYDALIEGLEIGPEV 324

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411
               +    +    +S +   P+ +   A+     +R+   C +   R    +     ++
Sbjct: 325 GSCGTAAFTKQPVWVSDVFSDPRWAAYRALAERFNFRA---CWSYPIRNARGEVLGTFAV 381

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471
                   + ++         +    ++TR     ++ E  +L  +   TS G+ I + E
Sbjct: 382 YFPTERAPEPHEKEVLTRGASLAALILETRR----LQTENARLAEVARQTSTGVLITDPE 437

Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT-PSVMNHYLTEILSLDLRQTLEKITL 530
             +L  N   ++L GY + D+  +    FL            + E L   L   +     
Sbjct: 438 RRVLWLNEGFTRLTGYTLADVYGRRPPEFLAGERTDRNTLEIIGERLREGLP--VHTRIY 495

Query: 531 GSTKEEKLLSLRIIIKKLPFSSCYSLTM----HDISEWKQEKNKLSHAKKIAEKESSHKS 586
              K+       + I+ L  +    +      HDI+   + + +L  A+  AE  +  K+
Sbjct: 496 FYRKDGTGFWDELRIEPLRDAEGRLIGFMGLNHDITALVEYEQELKRARAEAETAARLKA 555

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
            FLA +SHEIRTPL +I+GF+E + +++    G     E+   I RSG  +L ++ND+L+
Sbjct: 556 AFLANMSHEIRTPLNSILGFAE-LLDEQLAASGQESLREFTGIIQRSGRRLLRLINDILE 614

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706
           +S++E+ ++ L  EP +L   V EA++ ++  A +K + +       +P +L D   + Q
Sbjct: 615 LSRLEADRLVLRTEPCALHTIVKEAVAELEPLACQKGLTLTVH-TEAVPPVLGDPHRLHQ 673

Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSNE---EVILRVRDTGVGMTNYELEKAMKPFGQI 763
           I  N++ NA+ +T  G ++ +    T+ +   +V+LRV DTG G+    L    +PF + 
Sbjct: 674 IVTNLVGNALKYTEQG-EVRVEVQETTEDGVRQVVLRVTDTGPGIDPDFLPHLFEPFQRA 732

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             S+  R EG+GLGL + K +V+   G+  + S P  GT   + FP
Sbjct: 733 -PSENDRSEGSGLGLAITKRLVEQMNGRITVESAPGNGTTFTVTFP 777



 Score = 86.2 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/277 (12%), Positives = 78/277 (28%), Gaps = 17/277 (6%)

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
           SA  +   +      ++     F+     G L  ANP    L             G+  L
Sbjct: 2   SAPAELLPDFYRILFEEANDAIFLADVETGRLLDANPRACELIGRTRDA----IRGMHHL 57

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
              P+                   I    R   +  +      +            +   
Sbjct: 58  ELHPREERERYRAIFEHRAEAGRGID---RAEVVHRDGTR---IPVEISAARTTLGDRPV 111

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP- 488
             GI  +       ++K+         + E    G+ ++ ++G  +  N+ ++   GY  
Sbjct: 112 LIGIFRDLRPRHELEQKLHEAESHYRILAEQNLIGVYLV-QDGRFVYVNQYIADFLGYER 170

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI--IIK 546
            ED++ +     +       +   + + LS    +T+     G  ++  L+ + +     
Sbjct: 171 PEDLIGRSLVELVHPEDLPAVTANIQKRLS-GEMRTVHYSLRGFHRQGYLVEVEVIGSAT 229

Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
                      M   SE +++        +I +    
Sbjct: 230 TYRGRPAVLGVMLHTSEARRQARFYETESRILQDLLR 266



 Score = 70.4 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/289 (12%), Positives = 85/289 (29%), Gaps = 7/289 (2%)

Query: 38  KSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKE 97
            +++    H+    +         +  T  L +EN  + +   +T       D    +  
Sbjct: 384 PTERAPEPHEKEVLTRGASL-AALILETRRLQTENARLAEVARQTSTGVLITDPERRVLW 442

Query: 98  ISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTWYGKTTLWPIEGT 155
           ++E   +  G     + G R  +       D N    IG+ L+     + +   +  +GT
Sbjct: 443 LNEGFTRLTGYTLADVYGRRPPEFLAGERTDRNTLEIIGERLREGLPVHTRIYFYRKDGT 502

Query: 156 NLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHS 215
                 +L   P+        GF G    H      +     KR   +      +K    
Sbjct: 503 GF--WDELRIEPLRDAEGRLIGFMGLN--HDITALVEYEQELKRARAEAETAARLKAAFL 558

Query: 216 SVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDF 275
           +    +              +  ++++  +    +   +       L    + + E    
Sbjct: 559 ANMSHEIRTPLNSILGFAELLDEQLAASGQESLREFTGIIQRSGRRLLRLINDILELSRL 618

Query: 276 HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
               L   T+     T+   +    E L+ +   +L+ + +    +  +
Sbjct: 619 EADRLVLRTEPCALHTIVKEAVAELEPLACQKGLTLTVHTEAVPPVLGD 667



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/400 (8%), Positives = 94/400 (23%), Gaps = 53/400 (13%)

Query: 92  HGYLKEISEELPKTIGN-YAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150
            G    +++ +   +G      +IG  L ++     +     +   ++++ +   +T  +
Sbjct: 152 DGRFVYVNQYIADFLGYERPEDLIGRSLVELVHPEDL---PAVTANIQKRLSGEMRTVHY 208

Query: 151 -----PIEGTNLYVPIDLAALPIYSRNREFSGF---------------RGFGIVHVNRVD 190
                  +G  + V +  +A     R     G                    I+      
Sbjct: 209 SLRGFHRQGYLVEVEVIGSATTYRGRP-AVLGVMLHTSEARRQARFYETESRILQDLLRG 267

Query: 191 NDPRALGKRL-------------------DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231
               AL   L                   + +                E  +I  +    
Sbjct: 268 APQAALLDALCTAIEARLPDGICTILLLCEGRLYRGASHMPPEYDALIEGLEIGPEVGSC 327

Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE-SSLPEQEDFHTINLNQYTKKQYFG 290
                  +   +++ ++                    S P +     +            
Sbjct: 328 GTAAFTKQPVWVSDVFSDPRWAAYRALAERFNFRACWSYPIRNARGEVLGTFAVYFPTER 387

Query: 291 TLQ-NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSF 348
             + +  +      S       +           E   +      +      + + N  F
Sbjct: 388 APEPHEKEVLTRGASLAALILETRRLQTENARLAEVARQTSTGVLITDPERRVLWLNEGF 447

Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
             LT Y   D             A + +D N ++ +     +   +    R++  + +  
Sbjct: 448 TRLTGYTLADVYGRRPPE---FLAGERTDRNTLEIIGERLREG--LPVHTRIYFYRKDGT 502

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
                        +     +   G+  +       +++++
Sbjct: 503 GFWD-ELRIEPLRDAEGRLIGFMGLNHDITALVEYEQELK 541


>gi|144901258|emb|CAM78122.1| sensory transduction histidine kinase [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 975

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 136/745 (18%), Positives = 261/745 (35%), Gaps = 44/745 (5%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMI--GMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
           D    L   ++   + +     ++I  G    D+ D             + R        
Sbjct: 228 DPRERLVTANDLYRQFM-APVAEIIKPGRLFQDIVDAEFEMGVVRQECEVVRSGKLADHA 286

Query: 148 TLWPIEGTNLYV----PIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
               ++G    +     + +   P         G+    I+          A        
Sbjct: 287 VP-AVQGCEAELFDGRWVSINVYPTAD-----GGY--LRILRDVTARRQVTASLHDSVTW 338

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSS-----LTEYYAHKDDVLK 255
              +            +   I S  +             V       + E Y  + D   
Sbjct: 339 LRGIMNTVVDGIITIDDTASILSFNAAAERIFGYGADETVGRNVSMLMPEPYHSEHDDYM 398

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ--NNSKESFEYLSHRNHPSLSA 313
                   +    +  Q      +   +  +     +                +   +  
Sbjct: 399 RRYAETGEARVIGIGRQVKGKRKDGTVFPLELAVTRMNQGGLITYIGLVRDITDRKRVED 458

Query: 314 YFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
              E E    +  +     F+         + +     +        +     +      
Sbjct: 459 ALVESEQRFRDLAESASDWFWELDADLRFTFVSGRVRQVLG------VGPGYFIGRPFSD 512

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
              S  +     +     R        +            +        +   +     G
Sbjct: 513 LATSCEDPRDWDVQQSLIRGRRPFRGFIFVHPMPSGAVKFVEMAGRPAFDADGKFDGYRG 572

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
              +    + +++++  +     +I++    G+ + + +  +++ N    +L   P  +I
Sbjct: 573 TAADITPLKRHEQELATQSAMRQTIIDNMGQGVVVFDGDERLVALNSHARQLLDLPETEI 632

Query: 493 LRKP------FTVFLEQNTPSVMNHYLTEILSL--DLRQTLEKITLGSTKEEKLLSLRII 544
                           Q         + ++      LR+   ++   +     +L +R  
Sbjct: 633 ETGTSNLEALLLYLAVQGEFGHSGAIMVKVQRRLARLRRDPRRVFEHARPNGSVLEIRST 692

Query: 545 IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
                      LT  DI++ K+ +  L  A+  AE+ +  K+ FLA +SHE+RTPL AII
Sbjct: 693 AMP---GGGLILTFTDITDRKKVEVTLREARDAAERGNRAKATFLANISHELRTPLNAII 749

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           GFSE++K++ FGPL  P Y  Y + +  SG  +L+++ND+LD+SK E+G  +L   PV +
Sbjct: 750 GFSELMKHEIFGPLQPPAYRSYVDDVHESGMHLLELINDILDMSKAEAGMTDLVESPVDV 809

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724
              V  ++ ++   A+   I +     + +  + AD R ++QI LN+LSNA+ FT  GG 
Sbjct: 810 AAVVRASLRMMDKRASANGISLEADLPDGLAFLRADERRIRQILLNLLSNAVKFTDDGGM 869

Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
           + ++        V + V DTG+GMT  +++K M+PF Q       + EGTGLGLPL KA+
Sbjct: 870 VRVTAQVDGRGMV-IEVIDTGIGMTPEDMDKVMEPFVQADTRLSRKYEGTGLGLPLTKAL 928

Query: 785 VDANMGKFYIFSTPAKGTLIEIIFP 809
           V+A+ G   + S P  GT + + FP
Sbjct: 929 VNAHGGTMELHSIPDHGTTVTVTFP 953



 Score = 81.2 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 36/379 (9%), Positives = 76/379 (20%), Gaps = 25/379 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS----DILHIDPNNHIGDLLKRQNTWY 144
           ID    +   +    +  G  A + +G  +  +        H D      +  + +    
Sbjct: 353 IDDTASILSFNAAAERIFGYGADETVGRNVSMLMPEPYHSEHDDYMRRYAETGEARVIGI 412

Query: 145 GKTTL-WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
           G+       +GT    P++LA             +   G+V                +++
Sbjct: 413 GRQVKGKRKDGT--VFPLELAVT--RMNQGGLITY--IGLVRDITDRKRVEDALVESEQR 466

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQ---------SPPPHLRMKNKVSSLTEYYAHKDDVL 254
           F  L E                             P   +       + +       DV 
Sbjct: 467 FRDLAESASDWFWELDADLRFTFVSGRVRQVLGVGPGYFIGRPFSDLATSCEDPRDWDVQ 526

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
           ++                     +   +   +  F                         
Sbjct: 527 QSLIRGRRPFRGFIFVHPMPSGAVKFVEMAGRPAFDADGKFDGYRGTAADITPLKRHEQE 586

Query: 315 FDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
                 +    +D       V+     L   N     L      +       L  LL   
Sbjct: 587 LATQSAMRQTIIDNMGQGVVVFDGDERLVALNSHARQLLDLPETEIETGTSNLEALLLYL 646

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
            +         ++ +  R      ARL                  E  +           
Sbjct: 647 AVQGEFGHSGAIMVKVQRRL----ARLRRDPRRVFEHARPNGSVLEIRSTAMPGGGLILT 702

Query: 434 EPEDVDTRINKRKMEIEVM 452
             +  D +  +  +     
Sbjct: 703 FTDITDRKKVEVTLREARD 721



 Score = 75.4 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 42/423 (9%), Positives = 106/423 (25%), Gaps = 21/423 (4%)

Query: 66  NYLDSENTFVF-DPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD- 123
                E+   F D       + W +DA      +S  + + +G      IG    D++  
Sbjct: 457 EDALVESEQRFRDLAESASDWFWELDADLRFTFVSGRVRQVLGVGPGYFIGRPFSDLATS 516

Query: 124 ILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI 183
                  +    L++ +  + G   + P+  +     +++A  P +  + +F G+RG   
Sbjct: 517 CEDPRDWDVQQSLIRGRRPFRGFIFVHPMP-SGAVKFVEMAGRPAFDADGKFDGYRG--T 573

Query: 184 VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL 243
                                  + +       V      + +  S    L    +    
Sbjct: 574 AADITPLKRHEQELATQSAMRQTIIDNMGQGVVVFDGDERLVALNSHARQLLDLPETEIE 633

Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303
           T     +  +L            + + + +           +         +  E     
Sbjct: 634 TGTSNLEALLLYLAVQGEFGHSGAIMVKVQRRLARLRRDPRRVFEHARPNGSVLEIRSTA 693

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIA 363
                  L+            T+ +               A  +FL    ++    +   
Sbjct: 694 MPGGGLILTFTDITDRKKVEVTLREARDA-----AERGNRAKATFLANISHELRTPLNAI 748

Query: 364 GGLSTL----LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
            G S L    +  P            ++ S    +     +  +         +   P +
Sbjct: 749 IGFSELMKHEIFGPLQPPAYRSYVDDVHESGMHLLELINDILDMSKAEAGMTDLVESPVD 808

Query: 420 KANQFPENMPQNGIEPEDVDTRINK------RKMEIEVMQLCSI-LEATSDGIAIINREG 472
            A     ++             +          +  +  ++  I L   S+ +   +  G
Sbjct: 809 VAAVVRASLRMMDKRASANGISLEADLPDGLAFLRADERRIRQILLNLLSNAVKFTDDGG 868

Query: 473 IIL 475
           ++ 
Sbjct: 869 MVR 871



 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/153 (9%), Positives = 42/153 (27%), Gaps = 13/153 (8%)

Query: 430 QNGIEPEDVDTRINKRKMEIEVM-----QLCSILEATSDGIAIINREGIILSTNRAVSKL 484
              +  E +  +    + E +       +L   L +  DG+A+ +    +++ N    + 
Sbjct: 184 ALALLLEVLMRQQAVAESEGQRANLLQSRLVDALSSVQDGVALFDPRERLVTANDLYRQF 243

Query: 485 FG-----YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
                       + +       E          +      D      +       + + +
Sbjct: 244 MAPVAEIIKPGRLFQDIVDAEFEMGVVRQECEVVRSGKLADHAVPAVQGCEAELFDGRWV 303

Query: 540 SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572
           S+ +          Y   + D++  +Q    L 
Sbjct: 304 SINVYPT---ADGGYLRILRDVTARRQVTASLH 333


>gi|153870595|ref|ZP_01999963.1| signal transduction histidine kinase [Beggiatoa sp. PS]
 gi|152072938|gb|EDN70036.1| signal transduction histidine kinase [Beggiatoa sp. PS]
          Length = 1313

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 138/784 (17%), Positives = 268/784 (34%), Gaps = 85/784 (10%)

Query: 90   DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLL--KRQNTWYGK 146
            D    +   +    K  G    + IG    ++            +   L  ++  T +  
Sbjct: 313  DMDFKVVAWNPAAEKIFGYSQQEAIGHHANELVVPPSAQHLVKQVWHDLINQQGGTHFTN 372

Query: 147  TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
              L     T      +    P+  +     G     +V             +       +
Sbjct: 373  NNLTKAGNTISCEWYN---TPLIDKKGHVIGVA--SLVQDITERRQTEEALRLTQFTVDN 427

Query: 207  LHEI-----KKGHSSVEKEKY---------DIFSQQSPPPHLRMKNKVSSLTEYYAHKDD 252
              +      K GH     E+          ++ +            ++         +  
Sbjct: 428  ASDAIFWLGKNGHFIYANEETYHCLGYSREELLNMTLSDIETDFPAQLWDEHWEVLQELG 487

Query: 253  ------------------VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294
                               L    +    +E   L  ++     N  +  +K     L+ 
Sbjct: 488  SIVLQTDYHRKDGSQFPVELTENYFQFNDTEYLCLSVRDITERQNAEEELRKHRNH-LEE 546

Query: 295  NSKESFEYLS------------HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNL 341
               E  E L+             +         +E        V++      +    G +
Sbjct: 547  LVTERTEELANVNLQLQNVNLQLQQDILERKRVEEELRKFSRAVEQSANTIVITDLDGKI 606

Query: 342  FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401
             + NP+F + T Y   + I    G +  +           + +    +          L 
Sbjct: 607  EFVNPTFSIKTGYSYEEAI----GKNPRILKSGKHPIEFYENLWATITQGNVWQGE--LL 660

Query: 402  TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
              + N +       I     ++  +      I+ +  + +  +  +         +++  
Sbjct: 661  NKRKNGDLFWEFATISV-LKDRTGQKTHFLAIKEDITERKKAEEALRT----YQFVVDHA 715

Query: 462  SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
            S  I  +++EG     N A  +  GY  + +L    T      +    + +  ++L    
Sbjct: 716  SIQIFWVSQEGEFYYVNEAACRTLGYSKQKLLSMTVTDINPDISSETWDIHWQKLLQTQK 775

Query: 522  RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT--MHDISEWKQEKNKLSHAKKIAE 579
             QT    +    +   +  + +    L F         + DISE K+ +  L  AK++AE
Sbjct: 776  IQT---ESHHQNQAGNIYPIELNANYLEFQGKAFSISFVQDISERKRAEKALLEAKEVAE 832

Query: 580  KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639
              +  KS FLA +SHE+RTPL  I+G++++            +  E    I RSG  +L 
Sbjct: 833  SANQAKSTFLASMSHELRTPLNGILGYTQIF---NHDKSLTEKQQEGIQIIQRSGEHLLT 889

Query: 640  IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-IL 698
            ++ND+LD+SKIESGK+ L          + +   L ++ A +K +       + +P  + 
Sbjct: 890  LINDILDLSKIESGKLELMPTDFRFSNFLKDIADLFRMRAEQKNVEFIYEPLSQLPTAVY 949

Query: 699  ADLRSVKQIALNILSNAIHFTPSGGQIIISTTH---------TSNEEVILRVRDTGVGMT 749
            AD + ++Q+ LN+LSNA+ FT  G Q+     +          +   +   V D G G+ 
Sbjct: 950  ADEKRLRQVLLNLLSNAVKFTQEG-QVSFKVIYQSVPAPSTEENKNTIRFEVEDAGQGIA 1008

Query: 750  NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
              +LE+   PF Q+   Q  + EGTGLGLP++K +V+   G+  + S    G++     P
Sbjct: 1009 PDDLERIFLPFQQV-GDQSEQVEGTGLGLPISKKLVEMMAGQLQMQSMLGVGSIFWFEIP 1067

Query: 810  LYDT 813
            L ++
Sbjct: 1068 LPES 1071



 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 72/597 (12%), Positives = 164/597 (27%), Gaps = 63/597 (10%)

Query: 34  FETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHG 93
            E   +  +    +  +      +++  +S          +      R            
Sbjct: 139 LEHTNADLKQEIAERQQAEKALRKSERLMSTLLSNLPGMAYRCSNDRRRAA--------- 189

Query: 94  YLKEISEELPKTIGNYAFKMIGM---RLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTL 149
               +S+      G  + ++I      L D+      +   + I   L+ + ++     +
Sbjct: 190 --TFVSQGCYDLTGYQSDELINHTKMTLADLVHPKDYERIYHEIQIALQERRSFQLTYRI 247

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
           +   G   +V        ++S   +     GF  V             +   +K S   +
Sbjct: 248 YCQNGKQKWVWEQ--GQGVFSEQGDVLSLEGF--VKDITEQKQAEEALRESQQKLSLHIQ 303

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS-----SLTEYYAHKDDVLKTEKYPLLTS 264
                       + + +       +   ++       +           L  + +  L +
Sbjct: 304 HTPFGVIEWDMDFKVVAWNPAAEKIFGYSQQEAIGHHANELVVPPSAQHLVKQVWHDLIN 363

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
           ++       +  T   N  + + Y   L +         S     +     +E   LT  
Sbjct: 364 QQGGTHFTNNNLTKAGNTISCEWYNTPLIDKKGHVIGVASLVQDITERRQTEEALRLTQF 423

Query: 325 TVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDI------EIAGGLSTLLDAPKLSD 377
           TVD       ++  +G+  YAN        Y   + +            + L D      
Sbjct: 424 TVDNASDAIFWLGKNGHFIYANEETYHCLGYSREELLNMTLSDIETDFPAQLWDEHWEVL 483

Query: 378 NNAIKPVMLY---RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM-----P 429
                 V+     R D +        +  Q+N    L ++     +     E +      
Sbjct: 484 QELGSIVLQTDYHRKDGSQFPVELTENYFQFNDTEYLCLSVRDITERQNAEEELRKHRNH 543

Query: 430 QNGIEPEDVDT------------------RINKRKMEIEVMQLCSILEATSDGIAIINRE 471
              +  E  +                    + ++++E E+ +    +E +++ I I + +
Sbjct: 544 LEELVTERTEELANVNLQLQNVNLQLQQDILERKRVEEELRKFSRAVEQSANTIVITDLD 603

Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
           G I   N   S   GY  E+ + K   +      P      L   ++       +   L 
Sbjct: 604 GKIEFVNPTFSIKTGYSYEEAIGKNPRILKSGKHPIEFYENLWATITQGN--VWQGELLN 661

Query: 532 STKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
             K   L      I  L   +     +     DI+E K+ +  L   + + +  S  
Sbjct: 662 KRKNGDLFWEFATISVLKDRTGQKTHFLAIKEDITERKKAEEALRTYQFVVDHASIQ 718



 Score =  137 bits (346), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 47/476 (9%), Positives = 132/476 (27%), Gaps = 37/476 (7%)

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS-- 242
                        ++ ++  S L     G +          +         +    S   
Sbjct: 148 QEIAERQQAEKALRKSERLMSTLLSNLPGMAYRCSNDRRRAATFVSQGCYDLTGYQSDEL 207

Query: 243 -------LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN 295
                  L +    KD      +  +   E  S       +  N  Q    +    + + 
Sbjct: 208 INHTKMTLADLVHPKDYERIYHEIQIALQERRSFQLTYRIYCQNGKQKWVWEQGQGVFSE 267

Query: 296 SKESFEYLSHRNHPS----LSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLL 350
             +           +          E +      +   P     +     +   NP+   
Sbjct: 268 QGDVLSLEGFVKDITEQKQAEEALRESQQKLSLHIQHTPFGVIEWDMDFKVVAWNPAAEK 327

Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
           +  Y   + I      + L+  P            L              + +       
Sbjct: 328 IFGYSQQEAIGH--HANELVVPPSAQHLVKQVWHDLINQQGGT---HFTNNNLTKAGNTI 382

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470
               +      ++    +    +  +  + R  +  + +        ++  SD I  + +
Sbjct: 383 SCEWYN-TPLIDKKGHVIGVASLVQDITERRQTEEALRLT----QFTVDNASDAIFWLGK 437

Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530
            G  +  N       GY  E++L    +         + + +   +  L    ++   T 
Sbjct: 438 NGHFIYANEETYHCLGYSREELLNMTLSDIETDFPAQLWDEHWEVLQELG---SIVLQTD 494

Query: 531 GSTKEEKLLSLRII--IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
              K+     + +     +   +    L++ DI+E +  + +L   +   E+  + +++ 
Sbjct: 495 YHRKDGSQFPVELTENYFQFNDTEYLCLSVRDITERQNAEEELRKHRNHLEELVTERTEE 554

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
           LA V+ +++      +   + I  ++          +++  +++S N +  ++ DL
Sbjct: 555 LANVNLQLQN---VNLQLQQDILERKRV---EEELRKFSRAVEQSANTI--VITDL 602



 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 48/419 (11%), Positives = 128/419 (30%), Gaps = 25/419 (5%)

Query: 176 SGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR 235
            G  GF      + + + + +        +   +  K         +++ +       ++
Sbjct: 28  PGMDGFETCRWLKANEESKEIPVIFMSALNDTVDKVK--------GFELGAVDYITKPVQ 79

Query: 236 MKNKVSSLTEYYA--HKDDVLKTEKYPLLTSEESSLPEQEDFHTIN-LNQYTKKQYFGTL 292
           ++  ++ L  +       + LK +   L    +     ++     N   +   K     L
Sbjct: 80  VEEVLARLKTHLTLCELQNRLKEQNIQLKQEIDKRQQAEDALQQSNNQLEKIVKARTAEL 139

Query: 293 QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN---LFYANPSFL 349
           ++ + +  + ++            + E L    +   P   +  S+       + +    
Sbjct: 140 EHTNADLKQEIA--ERQQAEKALRKSERLMSTLLSNLPGMAYRCSNDRRRAATFVSQGCY 197

Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
            LT Y+S + I         L  PK  +      + +   +R     + R   I      
Sbjct: 198 DLTGYQSDELINHTKMTLADLVHPKDYE-RIYHEIQIALQERRSFQLTYR---IYCQNGK 253

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469
              +        ++  + +   G   +  + +  +  +     +L   ++ T  G+   +
Sbjct: 254 QKWVWEQGQGVFSEQGDVLSLEGFVKDITEQKQAEEALRESQQKLSLHIQHTPFGVIEWD 313

Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
            +  +++ N A  K+FGY  ++ +       +   +   +   +   L      T     
Sbjct: 314 MDFKVVAWNPAAEKIFGYSQQEAIGHHANELVVPPSAQHLVKQVWHDLINQQGGT-HFTN 372

Query: 530 LGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSH 584
              TK    +S       L     + +     + DI+E +Q +  L   +   +  S  
Sbjct: 373 NNLTKAGNTISCEWYNTPLIDKKGHVIGVASLVQDITERRQTEEALRLTQFTVDNASDA 431



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/249 (10%), Positives = 61/249 (24%), Gaps = 16/249 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV---SDILHIDPNNHIGDLLKRQNTWYG 145
            D  G ++ ++       G    + IG     +      +      ++   + + N W G
Sbjct: 600 TDLDGKIEFVNPTFSIKTGYSYEEAIGKNPRILKSGKHPIEF--YENLWATITQGNVWQG 657

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +       G   +    ++ L    R  + + F    I              +       
Sbjct: 658 ELLNKRKNGDLFWEFATISVL--KDRTGQKTHF--LAIKEDITERKKAEEALRTYQF--- 710

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPP--PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
            + +          ++ + +             K K+ S+T    + D   +T       
Sbjct: 711 -VVDHASIQIFWVSQEGEFYYVNEAACRTLGYSKQKLLSMTVTDINPDISSETWDIHWQK 769

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
             ++    Q + H  N                 +     +S     S     ++      
Sbjct: 770 LLQTQ-KIQTESHHQNQAGNIYPIELNANYLEFQGKAFSISFVQDISERKRAEKALLEAK 828

Query: 324 ETVDKCPIP 332
           E  +     
Sbjct: 829 EVAESANQA 837



 Score = 46.2 bits (108), Expect = 0.022,   Method: Composition-based stats.
 Identities = 24/195 (12%), Positives = 61/195 (31%), Gaps = 8/195 (4%)

Query: 69  DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID 128
           ++  T+ F     +++  W +   G    ++E   +T+G    K++ M + D++  +  +
Sbjct: 703 EALRTYQFVVDHASIQIFW-VSQEGEFYYVNEAACRTLGYSKQKLLSMTVTDINPDISSE 761

Query: 129 PNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNR 188
             +     L +      ++      G    + ++   L    +    S       V    
Sbjct: 762 TWDIHWQKLLQTQKIQTESHHQNQAGNIYPIELNANYLEFQGKAFSIS------FVQDIS 815

Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA 248
                        +     ++ K    +    +           + ++ N   SLTE   
Sbjct: 816 ERKRAEKALLEAKEVAESANQAKSTFLASMSHELRT-PLNGILGYTQIFNHDKSLTEKQQ 874

Query: 249 HKDDVLKTEKYPLLT 263
               +++     LLT
Sbjct: 875 EGIQIIQRSGEHLLT 889


>gi|189425062|ref|YP_001952239.1| multi-sensor signal transduction histidine kinase [Geobacter lovleyi
            SZ]
 gi|189421321|gb|ACD95719.1| multi-sensor signal transduction histidine kinase [Geobacter lovleyi
            SZ]
          Length = 1109

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 125/745 (16%), Positives = 249/745 (33%), Gaps = 40/745 (5%)

Query: 93   GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPI 152
            G ++  +  +          +IG R  +          +     L +            I
Sbjct: 359  GVIEFANNRMADMFTLPLNDLIGTRYVERLHPSERQIGDERMRQLIKGEIRSVTLDRHYI 418

Query: 153  EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212
                      L+   +   +         G++             + ++          +
Sbjct: 419  RADGTDFWGHLSGSRMEHADGSLKSL--VGVISDITHRKQAEDTLREMEATAQAAKRHLE 476

Query: 213  GHSSVEKEKY--------DIFSQQSPPPHLRMKNKVSSLTEYYAH--KDDVLKTEKYPLL 262
                +              +   +       ++   S   E + +    D          
Sbjct: 477  EAQRIAHLGSWQLNIVSNQLVWSKECYAIFGIQQDTSLTFESFVNCIHPDDRDLVSTAWS 536

Query: 263  TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
            ++   +  +      +        +    + +N+  +   +      +     D      
Sbjct: 537  SALTGAPYDITHRICVGDKVKWVVEQADIVFDNNGNALHGVGTVQDITERKETDNALREA 596

Query: 323  PE----TVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
             E     ++   + F+ +    G++   N  +  +  Y  V DIE +         P   
Sbjct: 597  KERFQFVIEGSQLGFWDWDIATGSVIR-NERWAEMLGYT-VQDIENSVRQWIDYIHPDDR 654

Query: 377  DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
            D            D       A    +    +    +        +   + +   G   +
Sbjct: 655  DPAMQSLQD--HLDGKTEMHKAEYRMLTKAGQYRWILDQAKIVSRDSHGKPLRMCGTHTD 712

Query: 437  DVDTRINKRKMEIEVMQLCSILEATSDGI---AIINREGI--ILSTNRAVSKLFGYPVED 491
              + +     ++    +  ++++   + +      + EG       +RAV +L    VE+
Sbjct: 713  ITERKQILNALQESEERYRNLVDNLQNVVVYQITGDLEGNRKFAYISRAVERLNEITVEE 772

Query: 492  ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
            +L     ++ +          L E+ ++     L            +      +      
Sbjct: 773  VLTDANVIYRQILPQYHDELQLKEVEAISNHAPLHIEVQSLLPSGIVKWFEFTVSPRIRH 832

Query: 552  SCYS---LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                       DI+  KQ + +L  AK  A+  +  KS+FLA +SHEIRTP+  ++G + 
Sbjct: 833  DGQIIWDGVEVDITHRKQSEQELIEAKLSADAANLAKSEFLANMSHEIRTPMNGVVGMTH 892

Query: 609  VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
            +++     P       +Y   I+ S N +  +++D+LD+SKIESGKM L     SL   +
Sbjct: 893  LLRTTDLTP----EQEQYLANIEISANSLTTLISDILDLSKIESGKMVLESTAFSLRSCI 948

Query: 669  SEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIII 727
             + +S  Q +  +K I + T  A+ +P  ++ D    +QI LNIL NAI FT  G QI I
Sbjct: 949  QDILSSQQFFIQQKAIRVTTEIADELPNTLIGDQLRTRQILLNILGNAIKFTEQG-QINI 1007

Query: 728  STTHTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
                         V + +RDTG+GM+    E+   PF Q  +S   R  G+GLGL + + 
Sbjct: 1008 VAELVEQHDRDIHVRMAIRDTGIGMSEQLQEQIFAPFVQADSSTTRRYGGSGLGLAICRR 1067

Query: 784  MVDANMGKFYIFSTPAKGTLIEIIF 808
            + D   G+ ++ S    G+   I  
Sbjct: 1068 LADLMGGRIWVESREGAGSCFYIEL 1092



 Score = 98.9 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 25/198 (12%), Positives = 70/198 (35%), Gaps = 6/198 (3%)

Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
           +  +W+                     +    ++ E  +    ++       QL +I+  
Sbjct: 288 YRARWSDIPIWVYLLGGVVILFSTVIIVSNRRLKREMAERNRAEQASADSAKQLNAIINT 347

Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520
           T  GI +++  G+I   N  ++ +F  P+ D++   +   L  +   + +  + +++  +
Sbjct: 348 TDAGIILVSPLGVIEFANNRMADMFTLPLNDLIGTRYVERLHPSERQIGDERMRQLIKGE 407

Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKK 576
           +R            +       +   ++  +          + DI+  KQ ++ L   + 
Sbjct: 408 IRSV-TLDRHYIRADGTDFWGHLSGSRMEHADGSLKSLVGVISDITHRKQAEDTLREMEA 466

Query: 577 IAEKESSHKSDFLARVSH 594
            A+    H  +   R++H
Sbjct: 467 TAQAAKRHLEE-AQRIAH 483


>gi|332711422|ref|ZP_08431354.1| PAS domain S-box protein [Lyngbya majuscula 3L]
 gi|332349971|gb|EGJ29579.1| PAS domain S-box protein [Lyngbya majuscula 3L]
          Length = 1443

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 130/809 (16%), Positives = 273/809 (33%), Gaps = 103/809 (12%)

Query: 97   EISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK---RQNT----------- 142
              S +    IG    +  G  + ++  ++H++  + +  +L       +           
Sbjct: 553  YYSPQFLSLIGYPLDQD-GPTINELLALIHLEDQDQVKAILDNLCTGRSSQRCSAVLGVS 611

Query: 143  --------WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR 194
                    W  K  L   +G+     I    L I   N E    R  G            
Sbjct: 612  PMSDCIKKWKQKFRLLRTDGSIS--WILSTGLVITDDNGEVV--RLVGTFTDITDS-QRV 666

Query: 195  ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP----PPHLRMKNKVSSLTEYYAHK 250
                    +   +    +    V      +  +Q P       L  KN V+         
Sbjct: 667  KALLAGQNRILEMITQWEKLPDVLDRLARLIEEQLPKIRCAFLLVDKNGVNLRHTAAPSL 726

Query: 251  DDV-----------------------LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287
             +                         ++     + +       ++   + NL       
Sbjct: 727  PESYIQAIDGMVIAPYMGCCGTAAYWRESVMVKDIATHPLCGSIRDLALSHNLRACWSIP 786

Query: 288  YFGTLQ------------------NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
               T                       + + +           +   E    T   +   
Sbjct: 787  ILSTQGTVLGTFSTYYTEPHTPNPEEQELADKATQLARIAIERSVAQEDVLRTNAMLKAQ 846

Query: 330  PIP-----FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
                      V  +  +   N  F  L +  + + +     +  LL        +  + +
Sbjct: 847  QEAAIDGILVVDENFRVVSYNHRFSDLWQ--TPEQLFETNDIQELLKQVSSQLKHPEEFL 904

Query: 385  MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
                  +     +     +  +        F          +   +     +  + ++++
Sbjct: 905  AQVDYLQAHPKTTNYDELLIKDGR---IFDFYSAPVLTSGGDYYGRIFCNRDITERKLSE 961

Query: 445  RKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
             K+     +   ++E+  D I + + E GIIL  N+   ++ G    +I+    +  + +
Sbjct: 962  AKLRQAEQKYRKLVESAGDAILMADAETGIILEANQMAEQMLGRRRAEIIGLHQSQIIPR 1021

Query: 504  NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                  +    + +        E   L        + +     +L   +       DIS+
Sbjct: 1022 ERFKAYSQSFQQHVEAGGVFQEELELLHQVGTTVPVEVSATTLELQGKTVVQGIFRDISD 1081

Query: 564  WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             KQ +  L  AK  AE  +  KS+F+A +SHE+RTPL  I+G++++++ +   P  +   
Sbjct: 1082 RKQAEQALKQAKVDAEVANRAKSEFVANMSHELRTPLNGILGYAQILQEE---PNLSATQ 1138

Query: 624  IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
             E  + I +SG  +L ++ND+LD+SKIE+ KM L        + +   + +V + A +K 
Sbjct: 1139 KEQLSIIQQSGQHLLTLLNDILDLSKIEAIKMELDVRDFQFPKFLEGIVEIVVISAKQKN 1198

Query: 684  ILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-----------QIIISTTH 731
            +  R  F + +P  +  D   ++Q+ +N+L NA+ FT +GG           ++ +  + 
Sbjct: 1199 LSFRYEFLSPLPEFVKGDEIRLRQVLMNLLGNAVKFTDTGGVTFKVGYLGCSELNVDRSL 1258

Query: 732  TSN---EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
            T     +++   + DTG+G+   +L +   PF Q+ N    +  GTGLGL ++K + +  
Sbjct: 1259 TEKQGTQKMRFVIADTGIGIPPKQLAEIFLPFHQVGN-TDRQVNGTGLGLSISKRLAELM 1317

Query: 789  MGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
              +  + ST  +G++  +   L D S   
Sbjct: 1318 GSELKVKSTVGQGSIFWLDLDLPDVSQEQ 1346



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 83/217 (38%), Gaps = 17/217 (7%)

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
              +     +       + + V +  SI E   +GI     +G  +S N A+++++GY  
Sbjct: 340 ALFLAAITSERNSAAELLLLSVAKYRSIFENAVEGICQTTPDGSYISANPALARIYGYQS 399

Query: 490 EDILRKPFTVFLE--QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
            + L    T         P      L ++    +    E       K+  ++ +   ++ 
Sbjct: 400 PEELVASVTDIAHQLYVDPQRRADLLLQLQEDGVVSGFEAQIY--QKDGSIIWISKNVRA 457

Query: 548 LPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
           +  SS +      T+ +I+E K  ++ L +  +  E +   ++  L +++ ++       
Sbjct: 458 IRDSSNFLLYYEATVEEITERKHAQDALLYQNERLEYQFQERTATLRQLNRQL------- 510

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
              +EV++++R           +A  I  + N + +I
Sbjct: 511 --IAEVLEHKRIEDALRESEERFALAIQANTNGLFEI 545



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/341 (8%), Positives = 82/341 (24%), Gaps = 67/341 (19%)

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIA 363
                S +              +            G+   ANP+   +  Y+S +++   
Sbjct: 347 TSERNSAAELLLLSVAKYRSIFENAVEGICQTTPDGSYISANPALARIYGYQSPEEL--V 404

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
             ++ +     +        ++  + D       A    I     + + ++       + 
Sbjct: 405 ASVTDIAHQLYVDPQRRADLLLQLQEDGVVSGFEA---QIYQKDGSIIWISKNVRAIRDS 461

Query: 424 FPENMPQNGIEPEDVDTRIN---------------------------------------K 444
               +       E  + +                                         +
Sbjct: 462 SNFLLYYEATVEEITERKHAQDALLYQNERLEYQFQERTATLRQLNRQLIAEVLEHKRIE 521

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK--PFTVFLE 502
             +     +    ++A ++G+  IN +      +     L GYP++            + 
Sbjct: 522 DALRESEERFALAIQANTNGLFEINLKTYDHYYSPQFLSLIGYPLDQDGPTINELLALIH 581

Query: 503 QNTPSVMNHYLTEILSLDLRQT----------------LEKITLGSTKEEKLLSLRIIIK 546
                 +   L  + +    Q                  ++       +  +  +     
Sbjct: 582 LEDQDQVKAILDNLCTGRSSQRCSAVLGVSPMSDCIKKWKQKFRLLRTDGSISWILSTGL 641

Query: 547 KLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
            +   +        T  DI++ ++ K  L+   +I E  + 
Sbjct: 642 VITDDNGEVVRLVGTFTDITDSQRVKALLAGQNRILEMITQ 682



 Score = 55.0 bits (131), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 32/392 (8%), Positives = 100/392 (25%), Gaps = 60/392 (15%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNTWYG 145
                G     +  L +  G  + + +   + D++  L++DP     +   L+      G
Sbjct: 377 QTTPDGSYISANPALARIYGYQSPEELVASVTDIAHQLYVDPQRRADLLLQLQEDGVVSG 436

Query: 146 -KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            +  ++  +G+   + I      I   +  F  +    +  +    +   AL  + ++  
Sbjct: 437 FEAQIYQKDGSI--IWISKNVRAIRDSS-NFLLYYEATVEEITERKHAQDALLYQNERLE 493

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
               E       + +               ++  +V           +  +     +  +
Sbjct: 494 YQFQERTATLRQLNR---------------QLIAEVLEHKRIEDALRESEERFALAIQAN 538

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
                      +           Y     +      +      +  L+    E ++    
Sbjct: 539 TNGLFEINLKTY--------DHYYSPQFLSLIGYPLDQDGPTINELLALIHLEDQDQVKA 590

Query: 325 TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
            +D           G    ++     +     + D                      +  
Sbjct: 591 ILDNL-------CTGR---SSQRCSAVLGVSPMSDCIKK----------------WKQKF 624

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
            L R+D +     +    I  +    + +     +  +         G +   ++     
Sbjct: 625 RLLRTDGSISWILSTGLVITDDNGEVVRLVGTFTDITDSQRVKALLAG-QNRILEMITQW 683

Query: 445 RKMEIEVMQLCSILEA----TSDGIAIINREG 472
            K+   + +L  ++E           ++++ G
Sbjct: 684 EKLPDVLDRLARLIEEQLPKIRCAFLLVDKNG 715



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/177 (12%), Positives = 56/177 (31%), Gaps = 11/177 (6%)

Query: 90   DAH-GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTWYGKT 147
            DA  G + E ++   + +G    ++IG+    +         +      ++    +  + 
Sbjct: 986  DAETGIILEANQMAEQMLGRRRAEIIGLHQSQIIPRERFKAYSQSFQQHVEAGGVFQEEL 1045

Query: 148  TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF-GIVHVNRVDNDPRALGKRLDKKFSH 206
             L    GT   VP++++A  +     E  G     GI              K+       
Sbjct: 1046 ELLHQVGTT--VPVEVSATTL-----ELQGKTVVQGIFRDISDRKQAEQALKQAKVDAEV 1098

Query: 207  LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
             +  K    +    +           + ++  +  +L+     +  +++     LLT
Sbjct: 1099 ANRAKSEFVANMSHELRT-PLNGILGYAQILQEEPNLSATQKEQLSIIQQSGQHLLT 1154


>gi|323700304|ref|ZP_08112216.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. ND132]
 gi|323460236|gb|EGB16101.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio desulfuricans
           ND132]
          Length = 1049

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 125/763 (16%), Positives = 268/763 (35%), Gaps = 70/763 (9%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMR--LCDVSDILHIDP-NNHIGDLLKRQNT 142
            W++D       +S +L   +G  +  + G       +            +   ++R+  
Sbjct: 168 VWDLDCDTSEVFVSPQLAALLGYGSDAVPGTHDGWLGLVHPSDRPGFEEALWGAVERRGA 227

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD- 201
           +  +  +   +G  ++  + +      S + +    R  G +             +R   
Sbjct: 228 FDRELRILDRDG--IWRWVLVRGKTAESDDGKAP-ARMVGTIQDVHARKTAEEELRRAKM 284

Query: 202 -------------KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL--RMKNKVSSLTEY 246
                             L E       V+ E+            L    + ++   T+Y
Sbjct: 285 AADLANSALKVNMAHLRTLMETMPELVWVKDEEGVFLFCNHRFERLYGASEAEIVGRTDY 344

Query: 247 YAHKDDVLKTEKYPLLTS---EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303
                D+    +   L +       + E++  +  + +    +     L ++  +    L
Sbjct: 345 DFVDADLADFFRGHDLRAMNSGRPCINEEQVTYRDDGHVEYLETIKTPLFDDDGKLIGVL 404

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKC----PIPFFVYSHGNLFYANPSFLLLTKYKSVDD 359
                 +      +    +               F++  G L   N     +T Y   ++
Sbjct: 405 GVARDITERKRIADELKESELRFKVLHNASFGGIFLHDQGVLLDCNQGLSDITGYT-QEE 463

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLY-------RSDRTCIAASARLHTIQWNRENSLA 412
           +     L  L  + +      I+            R D TC        +I +       
Sbjct: 464 LSGMEALDLLAPSARDDVREKIRARFERPYETVGLRRDGTCYPLQIAAKSIPYKGRVVRV 523

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG 472
           + F                    +  + +  + +++    +   I E +  G+   +R+G
Sbjct: 524 VEFR-------------------DITERKRAEDELKDSERRHRVIFENSPLGMIRFSRDG 564

Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
            IL  N    ++ G   E ++  P        +   M   L   ++       +  +  +
Sbjct: 565 RILDCNDRFVEMMGSSREALIGFPMLR----ASNPDMRRALATAIAGSPSAYEDYYSSET 620

Query: 533 TKEEKLLSLRIIIK-KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
            + E  L ++          +    T+ D SE K++++ L  AK+ AE  S  K++FL  
Sbjct: 621 GRRETFLHVQFNPVNPGQSPTEVIATLEDFSERKRDQDALRRAKEQAEAFSRSKTEFLTN 680

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           +SHEIRTPL  I+G  +++ +            EY+    +S   +++++ D+LD+S++E
Sbjct: 681 MSHEIRTPLNGIMGMLQLLHSTGLSR----EQAEYSGAALQSSRRLMNLLTDILDLSRVE 736

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALN 710
           +GK+ +   P  L E   +   L +L + +  + +      N+PR ++ D   ++Q+  N
Sbjct: 737 AGKLVVRAVPFDLVETCRQVCDLFKLTSAQSGVTLICELGENVPRRVIGDAIRLQQVLTN 796

Query: 711 ILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
           +L NA  FT +G  ++ +            ++  V DTG G+ + +++     F Q+   
Sbjct: 797 LLGNAFKFTATGSIVMAAHRLPDGPSKGYRILFSVADTGEGIPDEKVDTLFDAFTQVSEG 856

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
              R +G GLGL + + +V    G   I S    GT + +  P
Sbjct: 857 YTRRHQGAGLGLSICRNLVRLMGGTMSIESEEGAGTTLYVALP 899



 Score =  150 bits (380), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 75/652 (11%), Positives = 185/652 (28%), Gaps = 88/652 (13%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP--NNHIGDLLKRQN-- 141
             ++D+ G +   +  L    G    ++ G    ++     +           + R++  
Sbjct: 38  VLSLDSEGRVVFANRHLLDMTGWTFEEIRGKSWFELFLPEDVREGIREVFLATMARRDVG 97

Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
                T    +        +    + I +     +     GI    R      A+    +
Sbjct: 98  PHSCHTNEI-VTRDGRRRNVSWFNVLISAPEGGVANVTSLGIDLSARE-EAREAVEASEE 155

Query: 202 KKFSHLHEIKKGHSSVE-KEKYDIFSQQSPPPHLRMKNKVSSLTE---YYAHKDDVLKTE 257
           +    L   K     ++        S Q         + V    +      H  D    E
Sbjct: 156 QLKLALDAAKDAVWDLDCDTSEVFVSPQLAALLGYGSDAVPGTHDGWLGLVHPSDRPGFE 215

Query: 258 KYPLLTSEES-SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE-YLSHRNHPSLSAYF 315
           +      E   +   +      +           T +++  ++    +            
Sbjct: 216 EALWGAVERRGAFDRELRILDRDGIWRWVLVRGKTAESDDGKAPARMVGTIQDVHARKTA 275

Query: 316 DEGENL------------------TPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKS 356
           +E                          ++  P   +V    G   + N  F  L     
Sbjct: 276 EEELRRAKMAADLANSALKVNMAHLRTLMETMPELVWVKDEEGVFLFCNHRFERLYGASE 335

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
            + +              L+D      +   R+  +             +  +   +  I
Sbjct: 336 AEIVGR---TDYDFVDADLADFFRGHDL---RAMNSGRPCINEEQVTYRDDGHVEYLETI 389

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476
                +   + +   G+  +  + +    +++   ++   +  A+  GI + + +G++L 
Sbjct: 390 KTPLFDDDGKLIGVLGVARDITERKRIADELKESELRFKVLHNASFGGIFLHD-QGVLLD 448

Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
            N+ +S + GY  E++        L  +    +   +               T+G  ++ 
Sbjct: 449 CNQGLSDITGYTQEELSGMEALDLLAPSARDDVREKIRARFERP------YETVGLRRDG 502

Query: 537 KLLSLRIIIKKLPFSSCYSLT--MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
               L+I  K +P+           DI+E K+ +++L  +++                  
Sbjct: 503 TCYPLQIAAKSIPYKGRVVRVVEFRDITERKRAEDELKDSERRHRVIFE----------- 551

Query: 595 EIRTPLTAIIG------------FSEVIKNQRFGPLG-------NPRYIEYANYIDRSGN 635
              +PL  I              F E++ + R   +G       NP              
Sbjct: 552 --NSPLGMIRFSRDGRILDCNDRFVEMMGSSREALIGFPMLRASNPDMRRALATAIAGSP 609

Query: 636 LVLDIVNDLLDISKIESGK----MNLHFEPVSLDEAVSEAISLVQLYANEKR 683
              +      D    E+G+    +++ F PV+  ++ +E I+ ++ ++  KR
Sbjct: 610 SAYE------DYYSSETGRRETFLHVQFNPVNPGQSPTEVIATLEDFSERKR 655



 Score =  123 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 89/302 (29%), Gaps = 17/302 (5%)

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIA 363
            R    L     + E      ++  P     + S G + +AN   L +T +   ++I   
Sbjct: 10  IRRIEELEHRLADSERRWRGVLEYMPHIVLSLDSEGRVVFANRHLLDMTGWT-FEEIRGK 68

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
                 L          +    + R D      S   + I         +++     +  
Sbjct: 69  SWFELFLPEDVREGIREVFLATMARRD--VGPHSCHTNEIVTRDGRRRNVSWFNVLISAP 126

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
                    +  +       +  +E    QL   L+A  D +  ++ +   +  +  ++ 
Sbjct: 127 EGGVANVTSLGIDLSAREEAREAVEASEEQLKLALDAAKDAVWDLDCDTSEVFVSPQLAA 186

Query: 484 LFGYPVEDILRKP--FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
           L GY  + +      +   +  +        L   +        ++      ++     +
Sbjct: 187 LLGYGSDAVPGTHDGWLGLVHPSDRPGFEEALWGAVERRGA--FDRELRILDRDGIWRWV 244

Query: 542 RIIIKKLPFSSC-----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
            +  K               T+ D+   K  + +L  AK  A+  +S        ++H +
Sbjct: 245 LVRGKTAESDDGKAPARMVGTIQDVHARKTAEEELRRAKMAADLANSALKV---NMAH-L 300

Query: 597 RT 598
           RT
Sbjct: 301 RT 302


>gi|119487927|ref|ZP_01621424.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
 gi|119455503|gb|EAW36641.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
          Length = 1524

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 157/850 (18%), Positives = 308/850 (36%), Gaps = 82/850 (9%)

Query: 22   TQDLSKKKIDNGFETEKSKKE-NPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIP 80
            TQD++++K     + E+  ++ N   ++  Q    D   E    T  L+  +  + +   
Sbjct: 547  TQDITQQK-----QAEQRLQQLNQELEARVQQRTADLEAEIDERTRLLNILDASLNE--- 598

Query: 81   RTVRFTWNIDAH-GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR 139
                  +  DA     +  ++   + +G    ++  +    +   L  +    + D L  
Sbjct: 599  -----IYIFDAETLKFQYANQGALRNLGYTLEQLQQITAIKLKPQLTPEKFQQLIDPLLN 653

Query: 140  QNTW--YGKTTLWPIEGTNLYVPIDLAALPI-YSRNREFSGFRGFGIVHVNRVDNDPRAL 196
                    +       GT    P+++    I + + R F       +             
Sbjct: 654  HQQHKIIFRAAYQRKNGTLY--PVEVHFQLIEHQQERLF-----LAVALDITERQQTEDR 706

Query: 197  GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256
             + ++    +  E         +  Y   +      +   K     + +     +   + 
Sbjct: 707  LRLVEFALDNAQESVVIVDQSGQIVYVNKTACESLGYSSAKLSNLKIWQIDQTLNAPPQW 766

Query: 257  EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS--LSAY 314
            E++      + SL  +   HT        +     L  +    F  ++          A 
Sbjct: 767  EQFCQRLKHQKSLLLESIHHTQTGEAIPVEITLTELNFHGIPYFCEIARDIRERKQAEAA 826

Query: 315  FDEGENLTPETVD---------------------------KCPIPFFVYSHGNLFYANPS 347
              + +N     V+                              +  F + +       P 
Sbjct: 827  LQKRDNYLTALVEVQRQLLCATSQSDLYKLVLSILGQAANASQVYVFEHYYDEFQR--PY 884

Query: 348  FLLLTKYKSVDDIEIAG---------------GLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
               ++ + + D                      +  L     + ++ +       +    
Sbjct: 885  LYYMSHWSAPDATSRLNRSVLQQLYDTPCFSSWVEKLAQGEAICESLSDMTSEQRQILEP 944

Query: 393  CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE-- 450
                +  L  +    E    + F   E   Q+ E                 +R++  E  
Sbjct: 945  VGIFTVLLFPLIVKGEFFGLIGFDNDEDDRQWDEAEISLLAAAVSAIALATERQLAQEQL 1004

Query: 451  VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV-EDILRKPFTVFLEQNT-PSV 508
              QL +I EA S+GIAI +  G  L  N+A  +LFGY    ++L + +           +
Sbjct: 1005 KRQLTAI-EAASEGIAITSPMGDYLYLNKAHLELFGYTEANELLNRNWKSLYHPEEGDRI 1063

Query: 509  MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568
                + +++     +      L   K+         +  L  S  +     DI+E K+ +
Sbjct: 1064 DREVIAKLMEKGYSRG---EALAIRKDGSTFLEEFSLT-LTNSGEFVCVCRDITERKRAE 1119

Query: 569  NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
             +L       E+ +  K +F+A +SHE+RTPL +I+G SEV++ + +G L N   +   +
Sbjct: 1120 VELRRTNAQLERATRLKDEFMANMSHELRTPLYSILGLSEVLQQEVYGVL-NAEQLRSLS 1178

Query: 629  YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
             I++SG  +L+++N++LD+SKIESGKM L    V+L +    +++ V+  A++K I ++ 
Sbjct: 1179 TIEQSGQHLLELINEILDLSKIESGKMELQLSAVNLTQLCQSSLNFVKPQADQKNIQLQF 1238

Query: 689  SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS-NEEVILRVRDTGVG 747
                    I  D   ++Q+ +N+LSNA+ FTP G  I++       N  V L V DTG+G
Sbjct: 1239 IATPVPVIINIDELRIRQVLINLLSNAVKFTPEGNHILLKIETEPQNNCVHLSVTDTGIG 1298

Query: 748  MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
            +   +  +  +PF QI +S   R  GTGLGL L + +   + G   + S   +G+   + 
Sbjct: 1299 IAPEDQVRLFEPFVQIDSSLSRRYSGTGLGLALVRQITQMHAGTVSLDSEVGRGSTFIVT 1358

Query: 808  FPLYDTSHPH 817
             P   T  P 
Sbjct: 1359 LPWNSTVVPE 1368



 Score =  112 bits (279), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 54/536 (10%), Positives = 150/536 (27%), Gaps = 59/536 (11%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKRQNTWYGKT 147
           +   G L ++++      G    + I     +     +  +  + +   + +     G++
Sbjct: 204 LSREGILLDVNQTALDFGGLKREETINRPFWETYWWTISPETQHQLRQSIAKAA--SGES 261

Query: 148 TLWPIE---GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
             + +            D A  P+  +  E                 + +   +      
Sbjct: 262 IYYEVNVKIVGGKVATTDFALRPLRDQTGEVILL--IAESRDLSAHVEVKRALQDNQILL 319

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQ---SPPPHLRMKNKVSSLTEYYAHKDDVL---KTEK 258
           S + +        + ++ +        S    L    ++   T++     +     + + 
Sbjct: 320 SSVLDCIPQAVFWKNKEGNFLGCNYQFSVDGGLSSSKEIIGKTDFDMPWKEEAKLYRADD 379

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
           + ++ S E+ L  +E    +       + +   L++   E    +      +     +  
Sbjct: 380 HQVMASGEAKLNIEEPITKVGNISRLLRSHKMPLRDAEGEIIGVVGTYEDITERKKAELA 439

Query: 319 ENLTPE----TVDKCPIP-FFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
              +       V+  P     ++ H           L      S  ++E       L   
Sbjct: 440 LRCSEARYQMLVENFPNGAVMMFDHDLRYILIGGLGLAEVGL-SKQEMEGKTIWEAL--- 495

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
                   I+P+           A           ++   + F P               
Sbjct: 496 -PKETCELIEPLYHRTLAGEEFVAELPF------GDHIYLVYFFPIID---QETIQTGVV 545

Query: 433 IEPEDVDTRINKRKMEI---------------------EVMQLCSILEATSDGIAIINRE 471
           +  +    +  +++++                      E  +L +IL+A+ + I I + E
Sbjct: 546 LTQDITQQKQAEQRLQQLNQELEARVQQRTADLEAEIDERTRLLNILDASLNEIYIFDAE 605

Query: 472 -GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530
                  N+   +  GY +E + +        Q TP      +  +L+    + + +   
Sbjct: 606 TLKFQYANQGALRNLGYTLEQLQQITAIKLKPQLTPEKFQQLIDPLLNHQQHKIIFR-AA 664

Query: 531 GSTKEEKLLSLRII--IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
              K   L  + +   + +      +     DI+E +Q +++L   +   +     
Sbjct: 665 YQRKNGTLYPVEVHFQLIEHQQERLFLAVALDITERQQTEDRLRLVEFALDNAQES 720



 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 64/559 (11%), Positives = 139/559 (24%), Gaps = 83/559 (14%)

Query: 82  TVRFTWNIDAHGYLKEISEELPKTIGNYAF-KMIGMR-----LCDVSDILHIDPNNHIGD 135
                W  +  G     + +     G  +  ++IG         + + +   D +     
Sbjct: 327 PQAVFWK-NKEGNFLGCNYQFSVDGGLSSSKEIIGKTDFDMPWKEEAKLYRADDH----Q 381

Query: 136 LLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA 195
           ++                G    + +    +P+     E  G    G             
Sbjct: 382 VMASGEAKLNIEEPITKVGNISRL-LRSHKMPLRDAEGEIIGV--VGTYEDITERKKAEL 438

Query: 196 LGKRLDKKFSHLHEIKKGHSSVE---KEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD 252
             +  + ++  L E     + +      +Y +            K ++   T + A   +
Sbjct: 439 ALRCSEARYQMLVENFPNGAVMMFDHDLRYILIGGLGLAEVGLSKQEMEGKTIWEALPKE 498

Query: 253 V--LKTEKYPLLTSEESSLPEQEDFHTI-------------------NLNQYTKKQYFGT 291
              L    Y    + E  + E      I                        T+++    
Sbjct: 499 TCELIEPLYHRTLAGEEFVAELPFGDHIYLVYFFPIIDQETIQTGVVLTQDITQQKQAEQ 558

Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNL--FYANPSFL 349
                 +  E    +    L A  DE   L    +D      +++    L   YAN   L
Sbjct: 559 RLQQLNQELEARVQQRTADLEAEIDERTRLL-NILDASLNEIYIFDAETLKFQYANQGAL 617

Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK---------------PVMLYRSDRTCI 394
               Y     +E    ++ +   P+L+     +                    R + T  
Sbjct: 618 RNLGYT----LEQLQQITAIKLKPQLTPEKFQQLIDPLLNHQQHKIIFRAAYQRKNGTLY 673

Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
                   I+  +E                        +  +  + +  + ++ +     
Sbjct: 674 PVEVHFQLIEHQQER-------------------LFLAVALDITERQQTEDRLRLVEF-- 712

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
              L+   + + I+++ G I+  N+   +  GY    +         +            
Sbjct: 713 --ALDNAQESVVIVDQSGQIVYVNKTACESLGYSSAKLSNLKIWQIDQTLNAPPQWEQFC 770

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA 574
           + L       LE I    T E   + + +          +     DI E KQ +  L   
Sbjct: 771 QRLKHQKSLLLESIHHTQTGEAIPVEITLTELNFHGIPYFCEIARDIRERKQAEAALQKR 830

Query: 575 KKIAEKESSHKSDFLARVS 593
                     +   L   S
Sbjct: 831 DNYLTALVEVQRQLLCATS 849



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 50/136 (36%), Gaps = 5/136 (3%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            + +    ++ ++L  T    AI++REGI+L  N+      G   E+ + +PF       
Sbjct: 181 AQTKTSNQKIKALLNNTFQCTAILSREGILLDVNQTALDFGGLKREETINRPFWETYWWT 240

Query: 505 TPSVMNHYLTE-ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM----H 559
                 H L + I      +++           K+ +    ++ L   +   + +     
Sbjct: 241 ISPETQHQLRQSIAKAASGESIYYEVNVKIVGGKVATTDFALRPLRDQTGEVILLIAESR 300

Query: 560 DISEWKQEKNKLSHAK 575
           D+S   + K  L   +
Sbjct: 301 DLSAHVEVKRALQDNQ 316


>gi|257092610|ref|YP_003166251.1| multi-sensor hybrid histidine kinase [Candidatus Accumulibacter
            phosphatis clade IIA str. UW-1]
 gi|257045134|gb|ACV34322.1| multi-sensor hybrid histidine kinase [Candidatus Accumulibacter
            phosphatis clade IIA str. UW-1]
          Length = 1295

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 119/780 (15%), Positives = 253/780 (32%), Gaps = 46/780 (5%)

Query: 55   TDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI 114
            TD ++         DSE  F            +  DA+G    ++    +  G      +
Sbjct: 258  TDISERKRIEGELADSERRFRSVVESL-KEVIFRTDANGCWTYLNPAWTEITGFAIQDSL 316

Query: 115  GMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNRE 174
            G                     L RQ     +              +++ A   +     
Sbjct: 317  GRPSLKSVPAADRRYAAVRFAALARQEIASIREEARYRTRDGRGRWLEIFARAEFDDGGR 376

Query: 175  FSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP--PP 232
            F+G  G   ++             +       L E+      ++                
Sbjct: 377  FTGIAG--TLNDVTERRLALEQLHQQLHFVQELFEVLPLPIYLKDTAGRYLQFNKASEDF 434

Query: 233  HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYF--- 289
                +++    T       +              ++  +  +      +   +   +   
Sbjct: 435  FGIRRSEWLGRTVADLLPAEQAALHAERDRQLLATAGQQVYEAQVEGRDGRRRDTIYHKA 494

Query: 290  ---GTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG----NLF 342
                   + +      +      +  A     E+      +  P   F    G       
Sbjct: 495  TLTRPDGSIAGLLGAIVDITERKAQEAAVGAAESRLRHITNTVPAAVFQCEIGLRGVRYT 554

Query: 343  YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT 402
            + +     +T +        A  ++  +             V   +           L  
Sbjct: 555  FLSDRVSEITGHPREAVFADASVITGQIADDDRQRVMRGAWVAAMQRQAWQDEYRIHL-- 612

Query: 403  IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
                    +     P  +       +   GI  +          ++    +L  + E   
Sbjct: 613  -PNEALRWIRCQIHPAPELAADGATI-YTGIWQDVSL-------LKEADARLREVTENIP 663

Query: 463  DGIAIINREG----IILSTNRAVSKLFGYPVEDILRKP--FTVFLEQNTPSVMNHYLTEI 516
              +   +  G         +R ++++ G   E+ +  P      +  +   ++N  + + 
Sbjct: 664  VAVYQYHLSGAGGRTFRFFSRGLAQICGLSAEEAMASPEALHDLVHADDRELVNMSIAQA 723

Query: 517  LSLDLRQTLEKITLGSTKEEKLLSLRIII---KKLPFSSCYSLTMHDISEWKQEKNKLSH 573
             +     +++   +      +++ +            SS ++  + D+S  K    +L  
Sbjct: 724  AASQSPWSVDFRLIDRH-SGRIVWVHGEAHGKAMPDGSSLWNGYLADVSSAKMASEQLRL 782

Query: 574  AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
            AK+ AE  +  KS FLA +SHEIRTPL  +IG ++++     G   + R   +   + +S
Sbjct: 783  AKEDAEAANRAKSAFLANMSHEIRTPLNGVIGMTDLLL----GSTLSHRQRAHLQIVKQS 838

Query: 634  GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693
             + +L I+ND+LD SKIE+GK+       +L + V E +  + L A++K I +    A +
Sbjct: 839  SDALLTILNDILDFSKIEAGKLVAERVSFNLRQVVGEMLKALALRASDKGIELIGDIAAD 898

Query: 694  IPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDTGVGM 748
            +P  +L D   ++Q+ +N++ NAI FT  G ++I+    ++       +   + D+G+G+
Sbjct: 899  VPTHVLGDPGRLRQVLVNLVGNAIKFTSQG-EVIVRLECSAGNADEVGLHFAIIDSGIGI 957

Query: 749  TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
               +L      F Q   S   R  GTGLGL ++  + +   G   + ST  +G+      
Sbjct: 958  PEEKLATIFDAFAQADGSITRRYGGTGLGLTISARLAELLGGHIRVDSTLGQGSTFHFTL 1017



 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 49/505 (9%), Positives = 130/505 (25%), Gaps = 34/505 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV---SDILHIDPNNHIGDLLKRQNTWYG 145
            D HG +   ++   +  G    +++G     V        +     +  ++     W+G
Sbjct: 165 TDVHGTITYANDRFCEISGYTRDELLGRNHRIVKSGMHPPDL--FAQMWAVISAGQVWHG 222

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +      EG      ++ + +P   +  +   +    I                 +++F 
Sbjct: 223 ELCNRSREGRFY--WVNASIVPFCDQGGQPLQY--IAIRTDISERKRIEGELADSERRFR 278

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHL---RMKNKVSSLTEYYAHKDDVLKTEK--YP 260
            + E  K                     +    +++ +   +       D          
Sbjct: 279 SVVESLKEVIFRTDANGCWTYLNPAWTEITGFAIQDSLGRPSLKSVPAADRRYAAVRFAA 338

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
           L   E +S+ E+  + T +      + +     ++           N  +      E  +
Sbjct: 339 LARQEIASIREEARYRTRDGRGRWLEIFARAEFDDGGRFTGIAGTLNDVTERRLALEQLH 398

Query: 321 L----TPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
                  E  +  P+P ++    G     N +       +  + +         L   + 
Sbjct: 399 QQLHFVQELFEVLPLPIYLKDTAGRYLQFNKASEDFFGIRRSEWLGR---TVADLLPAEQ 455

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
           +  +A +   L  +             ++          +                G   
Sbjct: 456 AALHAERDRQLLATAGQQ----VYEAQVEGRDGRRRDTIYHKATLTRPDGSIAGLLGAIV 511

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAI--INREG-IILSTNRAVSKLFGYPVEDI 492
           +  + +  +  +     +L  I       +    I   G      +  VS++ G+P E +
Sbjct: 512 DITERKAQEAAVGAAESRLRHITNTVPAAVFQCEIGLRGVRYTFLSDRVSEITGHPREAV 571

Query: 493 L--RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
                  T  +  +    +                E       +  + +  +I       
Sbjct: 572 FADASVITGQIADDDRQRVMRGAWVAAMQRQAWQDEYRIHLPNEALRWIRCQIHPAPELA 631

Query: 551 SSC---YSLTMHDISEWKQEKNKLS 572
           +     Y+    D+S  K+   +L 
Sbjct: 632 ADGATIYTGIWQDVSLLKEADARLR 656



 Score =  132 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/398 (10%), Positives = 109/398 (27%), Gaps = 15/398 (3%)

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY 246
                D                    G +         ++Q      L+ ++ +   ++ 
Sbjct: 20  AAAVLDELEALAAQGGMSPEAVRFVNGLAGFLGHVGLAYAQNDRDLELKTRS-LDLCSDE 78

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
               +D L++E      +  S           +           +L     +        
Sbjct: 79  LLEANDRLRSELASRTRAIGSLRHTASGLLGGSEPSLPPGDDLESLSVLMADLVRQREAS 138

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
                 A            +D+  I      HG + YAN  F  ++ Y   + +    G 
Sbjct: 139 QRDLQGALLALANQKFA--LDQHAIVSITDVHGTITYANDRFCEISGYTRDELL----GR 192

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
           +  +    +   +    +    S              +        +        +Q  +
Sbjct: 193 NHRIVKSGMHPPDLFAQMWAVISAGQVWHGELCN---RSREGRFYWVNASIVPFCDQGGQ 249

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
            +    I  +  + +  + ++     +  S++E+  + I   +  G     N A +++ G
Sbjct: 250 PLQYIAIRTDISERKRIEGELADSERRFRSVVESLKEVIFRTDANGCWTYLNPAWTEITG 309

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
           + ++D L +P    +              +   ++    E      T++ +   L I  +
Sbjct: 310 FAIQDSLGRPSLKSVPAADRRYAAVRFAALARQEIASIRE-EARYRTRDGRGRWLEIFAR 368

Query: 547 KLPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEK 580
                         T++D++E +    +L       ++
Sbjct: 369 AEFDDGGRFTGIAGTLNDVTERRLALEQLHQQLHFVQE 406



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/292 (11%), Positives = 79/292 (27%), Gaps = 11/292 (3%)

Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIE 361
            L  +    L    +    +  E                       FL         +  
Sbjct: 4   LLKRQMRRRLGVDGERAAAVLDELEALAAQGGMSPEAVRFVNGLAGFLGHVGLAYAQNDR 63

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                +  LD        A   +    + RT    S R         +  ++   P +  
Sbjct: 64  DLELKTRSLDLCSDELLEANDRLRSELASRTRAIGSLRHTASGLLGGSEPSLP--PGDDL 121

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
                 M     + E     +    + +   +    L+     ++I +  G I   N   
Sbjct: 122 ESLSVLMADLVRQREASQRDLQGALLALANQKFA--LDQ-HAIVSITDVHGTITYANDRF 178

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
            ++ GY  +++L +   +      P  +   +  ++S    Q         ++E +   +
Sbjct: 179 CEISGYTRDELLGRNHRIVKSGMHPPDLFAQMWAVISAG--QVWHGELCNRSREGRFYWV 236

Query: 542 RIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
              I            Y     DISE K+ + +L+ +++          + +
Sbjct: 237 NASIVPFCDQGGQPLQYIAIRTDISERKRIEGELADSERRFRSVVESLKEVI 288


>gi|217969774|ref|YP_002355008.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T]
 gi|217507101|gb|ACK54112.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T]
          Length = 1029

 Score =  389 bits (999), Expect = e-105,   Method: Composition-based stats.
 Identities = 119/756 (15%), Positives = 250/756 (33%), Gaps = 59/756 (7%)

Query: 94  YLKEISEELPKTIGNYAFKMIGMRLCD--VSDILHI-DPNNHIGDLL-KRQNTWYGKTTL 149
            +   S E  +  G  A +++G R  +   +      +    IG  +     T       
Sbjct: 2   RVLRWSPEAERVFGWSAAEVLGRRPNEWSFTHPDDAAEVKRAIGQAITADGPTPPVIGRN 61

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
           +  +G  L+   +                  F          +        + +++H+  
Sbjct: 62  FTRDGRLLH--CEWHNRANRDPQGRLVSLLSFA--KDLTRQLEAERARDLSEARYAHIFN 117

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
                  +     +        P        S  T       D+       LL   +++ 
Sbjct: 118 NSHAVMLILDP--ESGRILDANPAAEEFYGWSRKTLQTMQIGDINTLSPQALLVELKAAH 175

Query: 270 PEQE---DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
            E+    +F     +   +     +            S  +  +     +          
Sbjct: 176 AEERKHFEFRHRRADGSVRDVEVHSGPTEDGNRSMVFSIVHDITERKQAEALSRRWERFF 235

Query: 327 DKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
               +   ++      +   N ++     Y S++++     +  L    +    +A    
Sbjct: 236 RLSNLGLAMHDVSDNTIIDVNATYASQHGY-SIEELRGM-RIDELYPEDEREQLHAHLAE 293

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
                + +      R         + L +        +     + +     +    +  +
Sbjct: 294 ADRIGNASFETVHLR------KDGSRLPLVIGVTALLDDRGRAVARFAFGLDISARKAAE 347

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            ++     +L   +E + + I I N    I   N+A     GY   + + +   +     
Sbjct: 348 DELR----KLSRAVEESPESIVITNTRAEIEYVNQAFIDKTGYSRAEAIGQNPRLLQSGR 403

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHD 560
           T       L   L+    ++ +       K+      R+ I  +   S     Y     D
Sbjct: 404 TTPATYADLWNTLTHG--RSWQGEFFNRRKDGSEYLERVTITPIHDESGHITHYVAVKQD 461

Query: 561 ISEWKQEKNKLSHAKK------------------IAEKESSHKSDFLARVSHEIRTPLTA 602
           I+  ++ + +L    +                   A   S  KS+FL  +SHEIRTP+  
Sbjct: 462 ITAQRRMEEELLRYHEHLEGLVESRTAELQHALDAANIASRAKSEFLTTMSHEIRTPMNG 521

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           +IG  +V+ + +         +E    +  S   +L +++D+LD S+IESG + L   P 
Sbjct: 522 VIGLLDVLSHSQLST----EQVEMVGIMRESAETLLRLIDDILDFSRIESGNLELDVGPA 577

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFT-- 719
           S+ + ++  + ++Q  AN K + + T    ++P +   D   ++QI  N++ NA+ F+  
Sbjct: 578 SIPDLIARVVGILQTVANRKSVRLSTRIDPDVPAVVRTDALRLQQILGNLVGNAVKFSSG 637

Query: 720 -PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
               G++ I         +   V D G+G+    +EK   PF Q  +S   R  G+GLGL
Sbjct: 638 LDRPGRVEIRVETAGAGRIRFMVTDNGIGIAPEAIEKIFDPFSQAESSTTRRFGGSGLGL 697

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
            +   +V    G+  + S P +G+   +  PL  T+
Sbjct: 698 SICTRLVRMMKGRMEVNSLPGRGSRFVVTLPLAATN 733



 Score =  110 bits (275), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 35/374 (9%), Positives = 102/374 (27%), Gaps = 16/374 (4%)

Query: 89  IDAH-GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
           +D   G + + +    +  G     +  M++ D++    + P   + +L           
Sbjct: 126 LDPESGRILDANPAAEEFYGWSRKTLQTMQIGDINT---LSPQALLVELKAAHAEERKHF 182

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                        +++ + P    NR       F IVH         AL +R ++ F   
Sbjct: 183 EFRHRRADGSVRDVEVHSGPTEDGNRSMV----FSIVHDITERKQAEALSRRWERFFRLS 238

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
           +     H   +    D+ +  +      ++       +    +D+  +   +        
Sbjct: 239 NLGLAMHDVSDNTIIDVNATYASQHGYSIEELRGMRIDELYPEDEREQLHAHLAEADRIG 298

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
           +   +      + ++         L ++   +    +     S     ++        V+
Sbjct: 299 NASFETVHLRKDGSRLPLVIGVTALLDDRGRAVARFAFGLDISARKAAEDELRKLSRAVE 358

Query: 328 KCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
           + P    + +    + Y N +F+  T Y   + I         L     +       +  
Sbjct: 359 ESPESIVITNTRAEIEYVNQAFIDKTGYSRAEAIGQNP----RLLQSGRTTPATYADLWN 414

Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
             +              +    +            ++         ++ +    R  + +
Sbjct: 415 TLTHGRSWQGE---FFNRRKDGSEYLERVTITPIHDESGHITHYVAVKQDITAQRRMEEE 471

Query: 447 MEIEVMQLCSILEA 460
           +      L  ++E+
Sbjct: 472 LLRYHEHLEGLVES 485


>gi|117924080|ref|YP_864697.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117607836|gb|ABK43291.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 911

 Score =  389 bits (999), Expect = e-105,   Method: Composition-based stats.
 Identities = 126/740 (17%), Positives = 238/740 (32%), Gaps = 29/740 (3%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D    L   ++      G     + G +  D          +     +  +     +  L
Sbjct: 39  DGQARLIRWNKNFATVTGYDDTTLQGKQALDFIAPCDQALVSSRIQQVFSEGHATIEAAL 98

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
               G     P  L+   +    + +    G  I    RV+   +A  +        L +
Sbjct: 99  RAHNG--QETPYFLSGSLVMIDEQPYLSGTGIDISARKRVEETLQAEQQLTQASLDALPD 156

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
                     +                +   +       +    L      L    ++  
Sbjct: 157 TYFLFHPETGKALRWNRAFREISGFSDRQIGALPAPSSYYSQSDLSIMATALEQLRKTGT 216

Query: 270 PEQED-FHTINLNQYTKKQYFGTLQNNSKESFEYLSH--RNHPSLSAYFDEGENLTPETV 326
            + E      N      +    +L +  +     +               E E       
Sbjct: 217 AKLEINLICHNGQTIPFEYAISSLAHQGQNLIISIGRDISERRLAENQLRESEQKFLRLF 276

Query: 327 DKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD---NNAIK 382
            +  IP   V   G + + N  F  L  Y   D  ++          P+           
Sbjct: 277 KEVSIPLVLVNKQGMVTHINDRFTTLLGYSMADIPDLDSWWQRAYPDPRYRAWVKETWTL 336

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
            V    +D   IA          N E             +             +  +   
Sbjct: 337 AVQKAMADGQDIA-PLEYQVTCKNGEQREIQISGVTFGED-------TLATLIDVTERSR 388

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
             + ++ E     S++      I +++ +G I+  N  + +L GY + ++  K +     
Sbjct: 389 AAKTLQQERDFADSLIHTAQTIILVLDTQGRIMRINPYMEELSGYTLAEVQGKDWWNTFL 448

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII----IKKLPFSSCYSLTM 558
                     L    ++        +    TK+ +LL +       I             
Sbjct: 449 PQQDHATLRALF-AKAVGHIHNQGHVNPILTKDGRLLEIEWYNKTLIDSHDEVMGLLSIG 507

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
           +DI+  +  + +   A   AE  +  KS+FLA +SHEIRTPL  ++G  +++       L
Sbjct: 508 YDITHKRALEAENREALARAESANQAKSEFLAIMSHEIRTPLNVLLGMGDLLHE----SL 563

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
                      + ++G  ++ +++D+LD+SKIE G + L  EP+           +V+L 
Sbjct: 564 LTEEQTGQLELLIKAGKHLVVLIDDILDLSKIEFGGLTLTREPLQPHRLFLLICDIVRLQ 623

Query: 679 ANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737
           A EK +         +P  +L D   ++QI +N+L NAI FT  G  + +   +     +
Sbjct: 624 AQEKGLTFNCDIPTELPPWVLGDEGRLRQIMINLLHNAIKFTQQG-HVTLKIAYQPAGSL 682

Query: 738 I-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
             + + D+G+G+    L      F Q  +S   R  GTGLGL +A+ +V    G   + S
Sbjct: 683 FSITISDSGIGIAAKHLNHIFDKFSQADSSISRRYGGTGLGLAIARNLVTLMGGHLTVES 742

Query: 797 TPAKGTLIEIIFPLYDTSHP 816
              +G+  ++   L  T  P
Sbjct: 743 CVNQGSHFQLTLELPPTQPP 762



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/138 (13%), Positives = 50/138 (36%), Gaps = 1/138 (0%)

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
           +       +++E  S    + + +  ++  N+  + + GY    +  K    F+     +
Sbjct: 18  QQSEAFSHAVIEGLSGIFYLFDGQARLIRWNKNFATVTGYDDTTLQGKQALDFIAPCDQA 77

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQE 567
           +++  + ++ S     T+E        +E    L   +  +      S T  DIS  K+ 
Sbjct: 78  LVSSRIQQVFSEGHA-TIEAALRAHNGQETPYFLSGSLVMIDEQPYLSGTGIDISARKRV 136

Query: 568 KNKLSHAKKIAEKESSHK 585
           +  L   +++ +      
Sbjct: 137 EETLQAEQQLTQASLDAL 154



 Score = 40.4 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/145 (8%), Positives = 37/145 (25%), Gaps = 18/145 (12%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D  G +  I+  + +  G    ++ G       +      ++     L     +     
Sbjct: 414 LDTQGRIMRINPYMEELSGYTLAEVQGKDW---WNTFLPQQDHATLRAL-----FAKAVG 465

Query: 149 LWPIEGT--------NLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
               +G            + I+     +   + E  G    G  +         A  +  
Sbjct: 466 HIHNQGHVNPILTKDGRLLEIEWYNKTLIDSHDEVMGLLSIG--YDITHKRALEAENREA 523

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIF 225
             +    ++ K    ++   +    
Sbjct: 524 LARAESANQAKSEFLAIMSHEIRTP 548


>gi|91772668|ref|YP_565360.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanococcoides burtonii DSM 6242]
 gi|91711683|gb|ABE51610.1| pleC (non-motile and phage-resistance protein) -like multisensor
           signal transduction histidine kinase [Methanococcoides
           burtonii DSM 6242]
          Length = 456

 Score =  389 bits (999), Expect = e-105,   Method: Composition-based stats.
 Identities = 112/363 (30%), Positives = 184/363 (50%), Gaps = 5/363 (1%)

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
           ++    +  +I +  +DGI +I+  G  +  N    K  GY  +++L+  +         
Sbjct: 91  LQESEEKFRTIFDKANDGIYLIDLHGRFIDVNAMACKQTGYSRDEMLQMAYKDMGFPEI- 149

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQ 566
                 + E+         E  ++          +R  I +    +       DI+E K+
Sbjct: 150 -DYKKQVKELYKKGYTS-FESASILKDDSTAYGQMRSQIIQYGGKTAILSIARDITERKK 207

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
            +  +  AK  AE  +  KS+FLA +SHE+RTPL +IIGFS+V+ N+  GPL N    +Y
Sbjct: 208 AEEAILEAKIEAESANRAKSEFLANMSHELRTPLNSIIGFSDVLYNESHGPL-NEYQKKY 266

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
            + + R+G  +LDI+ND+L IS IE+G M LH     + +A+ E  SL+ L A+EK I +
Sbjct: 267 TSNVLRNGKHLLDIINDILSISNIETGTMELHINEFIVSDAIDEVESLMILIASEKDIDL 326

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
             +    +P I  D+   KQI  N++ NAI FT  GG + I    + +  V + V+D+G+
Sbjct: 327 TCNIDIGMPTIKTDMIKFKQILYNLVHNAIKFTDQGGSVTIGGKISDD-LVHISVKDSGI 385

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G++  + +K   PF Q+ +S   +  GTGLGL L K  V+ + G+ ++ S   KG+    
Sbjct: 386 GVSPEDQDKLFNPFFQLDSSNARKYGGTGLGLALVKKFVEMHGGEIWVESEVGKGSTFTF 445

Query: 807 IFP 809
           I P
Sbjct: 446 IIP 448



 Score = 45.4 bits (106), Expect = 0.038,   Method: Composition-based stats.
 Identities = 27/175 (15%), Positives = 53/175 (30%), Gaps = 11/175 (6%)

Query: 53  NFTDQNQESVSNTNYLDSENTFVFDPI-PRTVRFTWNIDAHGYLKEISEELPKTIGNYAF 111
           N TDQ   S  +  +   E+   F  I  +     + ID HG   +++    K  G    
Sbjct: 75  NETDQEIGSYRDFKHSLQESEEKFRTIFDKANDGIYLIDLHGRFIDVNAMACKQTGYSRD 134

Query: 112 KMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSR 171
           +M+ M   D+     ID    + +L K+  T   ++     + +  Y         + S+
Sbjct: 135 EMLQMAYKDMGFPE-IDYKKQVKELYKKGYT-SFESASILKDDSTAYGQ-------MRSQ 185

Query: 172 NREFSGFRGF-GIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF 225
             ++ G      I                   +    +  K    +    +    
Sbjct: 186 IIQYGGKTAILSIARDITERKKAEEAILEAKIEAESANRAKSEFLANMSHELRTP 240


>gi|148258028|ref|YP_001242613.1| PAS/PAC sensor signal transduction histidine kinase [Bradyrhizobium
           sp. BTAi1]
 gi|146410201|gb|ABQ38707.1| PAS/PAC sensor signal transduction histidine kinase [Bradyrhizobium
           sp. BTAi1]
          Length = 981

 Score =  389 bits (999), Expect = e-105,   Method: Composition-based stats.
 Identities = 169/645 (26%), Positives = 287/645 (44%), Gaps = 37/645 (5%)

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
           L        +      S         +       L     V         K   L   + 
Sbjct: 327 LAPAADAPPQQDNITVSTRDASVASDAPPIDNGGLEAAGNVVPFRPAGETKHPALTPVEN 386

Query: 260 PLLTSEESSLPEQEDFHTINLNQYT----------------KKQYFGTLQ--NNSKESFE 301
                    L  + +    N                           +L   + S +   
Sbjct: 387 NAFHELARQLSARLEGDNRNAPADAAAATHEPAAQVTEPFDAPHVPTSLLGSDASDQPTA 446

Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIE 361
            L                      +D  P    +Y    L YANP+F     Y  +  +E
Sbjct: 447 GLQAEWLTPEQPPAQGDSQRDRILLDLLPTGMLIYRLDRLLYANPAFFKQMGYTDLATLE 506

Query: 362 IAGGLSTLLDAPKLSD----NNAIKPVMLYRSDR---TCIAASARLHTIQWNRENSLAMT 414
            AGGL  L   P             PV +  +D      I A ARL TI W+ +++ A+ 
Sbjct: 507 QAGGLDALYVEPGAPAGSGKPEVGTPVTISAADGSSSEEIKAEARLFTITWDGDSAHALI 566

Query: 415 FIP--------FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
           F P             +           P  +           +   L +IL+ T++GI 
Sbjct: 567 FAPAPGPAATAVSAPAETGSAPAPAPAAPAPLVLAPPPVAGHADAEDLAAILDVTAEGIL 626

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
           + +  G I + NR+   +FGY   +++R+         +  ++  +L  +         E
Sbjct: 627 MFDAGGNIHACNRSAEAMFGYDGTELVRRNIIELFAPESARLVLDHLDRVQQAGTANVPE 686

Query: 527 --KITLGSTKEEKLLSLRIIIKKLPFSSC-YSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
             +  LG   +   + L + I +       +     D+S+ ++ +++L  A+++A++ +S
Sbjct: 687 PSREVLGKVAQGGAIPLSMTIGRTRQDGPNFFAVFRDLSQLRRGESELLQARRVADRAAS 746

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
            K+D LAR+SHE+R PL AIIGF+EV+  +RFG LGN RY EY   I  SG  V+ +++D
Sbjct: 747 AKADMLARISHEVRAPLNAIIGFAEVMIGERFGTLGNTRYAEYMKDIRASGERVVSLIDD 806

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703
           LL++S+IE+G++ L F   +L+E V   ++++Q +AN  RI+IRTS + ++P ++AD R+
Sbjct: 807 LLELSRIETGRLELAFTSQNLNELVEGCVAVMQPHANRARIIIRTSLSQSLPPVIADARA 866

Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
           ++QIA+N++S +I    +GGQ+I+ST  +   EV+LRVRDTG G+ +  +  A++PF + 
Sbjct: 867 LRQIAMNLISTSISLANAGGQVIVSTATSDFGEVVLRVRDTGHGLNDQAVAAALEPF-RA 925

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
               +   +G+GL L L KA+V+AN  +F+I + P  GTL+E++F
Sbjct: 926 TAGPEQGHDGSGLSLSLTKALVEANRAQFHIKAAPKSGTLLEVVF 970



 Score = 46.2 bits (108), Expect = 0.026,   Method: Composition-based stats.
 Identities = 21/221 (9%), Positives = 44/221 (19%), Gaps = 22/221 (9%)

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
           NH            L        P   +      + +AN          +   +     +
Sbjct: 2   NHADFELQALSDPRLAVHAAGSLPAWLWSADGSRVLWANAMAARALGAANSWAL-----V 56

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
                          +       +        RL  ++       A+        +    
Sbjct: 57  DKRFGPADQHRRQVAQLARRLPENGA-----IRLERLRGFGAPLGALATCGCAMIDLPDG 111

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
                    ++               +L  ++E +   +      G     + A  +LFG
Sbjct: 112 MRAVLITGTDNSGRSWPL------TERLRRLVENSGLALIAFTAHGEFAGISTAGRRLFG 165

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
                                 +     EI   D R  L +
Sbjct: 166 IHDLS------APLFADVRNEALTAGFAEIQFGDERAVLHR 200



 Score = 41.2 bits (95), Expect = 0.75,   Method: Composition-based stats.
 Identities = 41/362 (11%), Positives = 98/362 (27%), Gaps = 44/362 (12%)

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD---------- 201
             G  L+   DL+A P+++  R  +   GF  +           +G              
Sbjct: 158 TAGRRLFGIHDLSA-PLFADVRNEALTAGFAEIQFGDERAVLHRVGAGSQIGLVAVPAPA 216

Query: 202 ---KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
              K+     ++      V +         +P P +  +       +    +    +T  
Sbjct: 217 PAVKQAEPNADVPVDAVPVAETAATPPHPANPAPEVAAECPPPPSMDAMTERPLDDETSA 276

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
                +   +  ++       +    + +   ++   + ++      ++  + +A     
Sbjct: 277 QSREAAAAFAPLDEPAVQAPPVVGIDRPEPTSSIAAETADADATAFAQSDLAPAADAPPQ 336

Query: 319 ENLTPETVDKCPIPF--------FVYSHGNLFYANPS----FLLLTKYKSVDDIEIAGGL 366
           ++    +     +           + + GN+    P+       LT  ++    E+A  L
Sbjct: 337 QDNITVSTRDASVASDAPPIDNGGLEAAGNVVPFRPAGETKHPALTPVENNAFHELARQL 396

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
           S  L+    +            + +      A          ++        +     PE
Sbjct: 397 SARLEGDNRNAPADAAAATHEPAAQVTEPFDAPHVPTSLLGSDASDQPTAGLQAEWLTPE 456

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
             P  G    D                   +L+    G+ I   +  +L  N A  K  G
Sbjct: 457 QPPAQGDSQRD-----------------RILLDLLPTGMLIYRLD-RLLYANPAFFKQMG 498

Query: 487 YP 488
           Y 
Sbjct: 499 YT 500


>gi|46202135|ref|ZP_00053708.2| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 663

 Score =  389 bits (998), Expect = e-105,   Method: Composition-based stats.
 Identities = 146/645 (22%), Positives = 266/645 (41%), Gaps = 34/645 (5%)

Query: 182 GIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ--QSPPPHLRMKNK 239
           G                   +    L++      +       + S    S  P  R ++ 
Sbjct: 22  GTAQTLDAQRQLLEA-LGNSRDGVALYDSANRLITCNDRYLQMLSPIKDSIRPGARFEDL 80

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
           ++ L E    +D  L  +          +    + F   +    T   Y  +   +  + 
Sbjct: 81  MAELAEAEKMEDGWLARKLSGG--GLTDATAGDDKFR--DGQWITVNAYATS---DGGQL 133

Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVD 358
                           ++  +     +D        +   G +   NP+   L  + +  
Sbjct: 134 RILRDITQRKQAEIALEDTVSWLRGVMDTVVDGIVTIDETGTVLSFNPAAEHLFGWAAEQ 193

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
            +     +S L+  P    ++               A    +  ++ +  +      I  
Sbjct: 194 VVGRN--VSMLMPDPHQGAHDGYIRAYFSSKSGKVGANGREVEGLRRDGTHFPMELAIAH 251

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEI-------EVMQLCSILEATSDGIAIINRE 471
                  + +   G+  +  + + +++ +         +  +L +I++    G+A+   +
Sbjct: 252 ---MHQGDMLTFIGVIRDISERKRSEKALRDSTTRLSHQANRLQAIIDNMPQGVAVFASD 308

Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV-------MNHYLTEILSLDLRQT 524
             +++ N +  ++ G P  +I      + L     +         +  LT  LS  +R+ 
Sbjct: 309 DALIALNESAIRMLGLPKAEITPGTIDISLFMALLAANDTPPGHHSAQLTADLSESIRER 368

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
            E +    T    ++ +R             L+  DI++ K  +  L  AK  AE+ +  
Sbjct: 369 PEMVFEHFTPSGLIMEVRSSSMP---GGGLILSFTDITDRKHIEQTLREAKDEAERGNRT 425

Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
           K+ FLA +SHE+RTPL AIIGFSE++K++ FGPL    Y  Y + I  SG  +L+++ND+
Sbjct: 426 KNTFLANISHELRTPLNAIIGFSEMMKHEIFGPLEPASYRAYVDDIHESGMHLLELINDI 485

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704
           LD+SK E+G  +L    V + + +  AI L+   A    I +      N+P +LAD R +
Sbjct: 486 LDMSKAEAGMTDLMETAVHVPDLIRAAIRLLNRRAENAAISLTEDLPPNLPTLLADERRL 545

Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764
           +QI LN+ SNA+ FT  GG + I    T    V +RV DTG+GMT  ++++ M+PF Q  
Sbjct: 546 RQIILNLGSNAVKFTDDGGAVTIGAKVTEAGFV-IRVADTGIGMTPEDVQRVMEPFVQAD 604

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
                + EG+GLGLPLAKA+V A+ G   + S P +GT++ + FP
Sbjct: 605 TRLSRKYEGSGLGLPLAKALVIAHGGTLNLDSQPGRGTVVTVTFP 649



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/136 (11%), Positives = 47/136 (34%), Gaps = 8/136 (5%)

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPF 497
             +   + ++ +   L + L  + DG+A+ +    +++ N    ++     + I     F
Sbjct: 19  PPKGTAQTLDAQRQLLEA-LGNSRDGVALYDSANRLITCNDRYLQMLSPIKDSIRPGARF 77

Query: 498 TVFLEQ--NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555
              + +      + + +L   LS               ++ + +++              
Sbjct: 78  EDLMAELAEAEKMEDGWLARKLSGGGLTDATAG-DDKFRDGQWITVNAYAT---SDGGQL 133

Query: 556 LTMHDISEWKQEKNKL 571
             + DI++ KQ +  L
Sbjct: 134 RILRDITQRKQAEIAL 149



 Score = 47.7 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 38/406 (9%), Positives = 109/406 (26%), Gaps = 27/406 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL-----KRQNTW 143
           ID  G +   +       G  A +++G  +  +    H   ++            +    
Sbjct: 170 IDETGTVLSFNPAAEHLFGWAAEQVVGRNVSMLMPDPHQGAHDGYIRAYFSSKSGKVGAN 229

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +      +GT  + P++LA   ++    +   F   G++             +    +
Sbjct: 230 GREVEGLRRDGT--HFPMELAIAHMH--QGDMLTF--IGVIRDISERKRSEKALRDSTTR 283

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPP-PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
            SH     +       +   +F+             ++  L +       +  +    LL
Sbjct: 284 LSHQANRLQAIIDNMPQGVAVFASDDALIALNESAIRMLGLPKAEITPGTIDISLFMALL 343

Query: 263 TSEESSLPEQEDFHTINLNQYTKK------QYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
            + ++         T +L++  ++      ++F       +     +             
Sbjct: 344 AANDTPPGHHSAQLTADLSESIRERPEMVFEHFTPSGLIMEVRSSSMPGGGLILSFTDIT 403

Query: 317 EGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
           + +++     +            N F AN S  L T       I  +  +   +  P   
Sbjct: 404 DRKHIEQTLREAKDEAERGNRTKNTFLANISHELRTPL--NAIIGFSEMMKHEIFGPLEP 461

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
            +       ++ S    +     +  +         +        +     +       E
Sbjct: 462 ASYRAYVDDIHESGMHLLELINDILDMSKAEAGMTDLMETAVHVPDLIRAAIRLLNRRAE 521

Query: 437 DVDTRINKR------KMEIEVMQLCSILEAT-SDGIAIINREGIIL 475
           +    + +        +  +  +L  I+    S+ +   +  G + 
Sbjct: 522 NAAISLTEDLPPNLPTLLADERRLRQIILNLGSNAVKFTDDGGAVT 567


>gi|17232665|ref|NP_489213.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17134311|dbj|BAB76872.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 965

 Score =  389 bits (998), Expect = e-105,   Method: Composition-based stats.
 Identities = 108/640 (16%), Positives = 240/640 (37%), Gaps = 67/640 (10%)

Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271
                      +    +  P  +  KN+V  + +  + +  V     +    ++      
Sbjct: 89  AAAQRWLGYTAEEVIGKKTPEMIHDKNEVVKVAQELSQELGVTIEPGFEAFVAKARLGQV 148

Query: 272 QED---FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN----LTPE 324
           +E    +   + +++        L +  K    +L   +  +     +            
Sbjct: 149 EEREWTYIRKDGSRFPVLLSVTPLYDAEKNITGFLGIGSDITARKAAEAALRESEYRYAT 208

Query: 325 TVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
                P+  F     G   +AN     L     + DI   G + +L    +L     ++ 
Sbjct: 209 LAQTAPVGIFRNDAFGRCIFANERACNLIG-SPLKDILGEGWIQSLHPDDRLR---IVRE 264

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
                       A  R    +        + +    +     E     G   +  D +  
Sbjct: 265 WNQAVQQNLPFKAEYRF---RHPNNVINWVIYQAIPERGSNGEVTGYIGTMTDINDRKRA 321

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
           + ++      L   LE+  +GI+ ++ +G  +  N A +K+ GY  E+++   + + +  
Sbjct: 322 EEELL----HLSQALESAVEGISQLDTQGHYIKVNPAYAKITGYKPEEMIGMEWALTVHP 377

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMH 559
           +    M     ++L       +E       K+      ++++ K          +   M 
Sbjct: 378 DDKEKMMAAYHQMLKNGK---VEIEARAMRKDGSAFYKQVVMVKAYNQQQECIGHYCFMK 434

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           DIS+ ++ +                K +F++ VSHE+RTPLT+I G  +++ +    P G
Sbjct: 435 DISDRREVE--------------RLKDEFVSVVSHELRTPLTSISGALDLLASGVV-PAG 479

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
           +       N    + + ++ ++ND+LDI +IESGK+ +  +  +  + +++++ +++  A
Sbjct: 480 SEDAQRMLNIAANNTDRLVRLINDILDIERIESGKIQIAPQACNAADLMTQSVEVMEELA 539

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE--- 736
            +  I +  S +     + AD   + Q+  N++SNAI F+P+G  + ++       E   
Sbjct: 540 EQAGIQL--SMSPLSAHLWADSDRIIQVFTNLISNAIKFSPTGATVWVTAKILEKGELEK 597

Query: 737 ---------------------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
                                ++  V+D G G+   +LE   + FGQ+  S   +  GTG
Sbjct: 598 SQTPIPLYPQTPIPLYPHTPIILFAVKDQGRGIPADKLESIFERFGQVDASDSRKKGGTG 657

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
           LGL + ++++  + G+ +  ST  +G+      P++    
Sbjct: 658 LGLAICRSILQHHGGQIWAESTSGEGSTFSFTLPIFPEEQ 697



 Score =  110 bits (275), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 55/504 (10%), Positives = 142/504 (28%), Gaps = 47/504 (9%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMR--------------LCDVSDILHIDPNNHIGDL 136
             G +   +    + +G  A ++IG +                ++S  L +         
Sbjct: 80  PDGIILTFNAAAQRWLGYTAEEVIGKKTPEMIHDKNEVVKVAQELSQELGVTIEPGFEAF 139

Query: 137 LKR---QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193
           + +         + T    +G+    P+ L+  P+Y   +  +GF G G           
Sbjct: 140 VAKARLGQVEEREWTYIRKDGS--RFPVLLSVTPLYDAEKNITGFLGIGS--DITARKAA 195

Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHK 250
            A  +  + +++ L +                             +K+ +        H 
Sbjct: 196 EAALRESEYRYATLAQTAPVGIFRNDAFGRCIFANERACNLIGSPLKDILGEGWIQSLHP 255

Query: 251 DDVLK-TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
           DD L+   ++     +      +  F   N             + ++ E   Y+      
Sbjct: 256 DDRLRIVREWNQAVQQNLPFKAEYRFRHPNNVINWVIYQAIPERGSNGEVTGYIGTMTDI 315

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
           +     +E      + ++            G+    NP++  +T YK  + I +   L+ 
Sbjct: 316 NDRKRAEEELLHLSQALESAVEGISQLDTQGHYIKVNPAYAKITGYKPEEMIGMEWALT- 374

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
                 +  ++  K +  Y               ++ +         +      Q     
Sbjct: 375 ------VHPDDKEKMMAAYHQMLKNGKVEIEARAMRKDGSAFYKQVVMVKAYNQQQECIG 428

Query: 429 PQNGIEPEDVDTRINKRKMEIE-----VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
               ++ +  D R  +R ++ E       +L + L + S  + ++   G++ + +    +
Sbjct: 429 HYCFMK-DISDRREVER-LKDEFVSVVSHELRTPLTSISGALDLL-ASGVVPAGSEDAQR 485

Query: 484 LFGYPVE--DILRKPFTVFLEQNTPSVMNHYLT-EILSLDLRQTLEKITLGSTKEEKLLS 540
           +        D L +     L+          +  +  +     T     +    E+  + 
Sbjct: 486 MLNIAANNTDRLVRLINDILDIERIESGKIQIAPQACNAADLMTQSVEVMEELAEQAGIQ 545

Query: 541 LRIIIKKLP---FSSCYSLTMHDI 561
           L +          S        ++
Sbjct: 546 LSMSPLSAHLWADSDRIIQVFTNL 569



 Score = 76.2 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 58/157 (36%), Gaps = 19/157 (12%)

Query: 446 KMEIEVMQLC-SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR-KPFTVFLEQ 503
           ++E+   +L  +IL + +  I     +GIIL+ N A  +  GY  E+++  K   +  ++
Sbjct: 55  QLEVTNQKLQQAILNSANYTIISTTPDGIILTFNAAAQRWLGYTAEEVIGKKTPEMIHDK 114

Query: 504 NTPSVMNHYLTE-------------ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
           N    +   L++             +    L Q  E+      K+     + + +  L  
Sbjct: 115 NEVVKVAQELSQELGVTIEPGFEAFVAKARLGQVEEREWTYIRKDGSRFPVLLSVTPLYD 174

Query: 551 SS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
           +      +     DI+  K  +  L  ++      + 
Sbjct: 175 AEKNITGFLGIGSDITARKAAEAALRESEYRYATLAQ 211



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 41/413 (9%), Positives = 104/413 (25%), Gaps = 42/413 (10%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
            +D  G+  +++    K  G    +MIGM           +        + +      + 
Sbjct: 341 QLDTQGHYIKVNPAYAKITGYKPEEMIGMEWALTVHPDDKEKMMAAYHQMLKNGKVEIEA 400

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                +G+  Y  + +     Y++ +E  G   F    +  + +       + +      
Sbjct: 401 RAMRKDGSAFYKQVVMVKA--YNQQQECIGHYCF----MKDISDRREVERLKDEFVSVVS 454

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
           HE++   +S+      + S   P            +    A+  D L      +L  E  
Sbjct: 455 HELRTPLTSISGALDLLASGVVPAG----SEDAQRMLNIAANNTDRLVRLINDILDIERI 510

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
              + +             Q    ++  ++++   LS      LSA+     +   +   
Sbjct: 511 ESGKIQIAPQACNAADLMTQSVEVMEELAEQAGIQLSMSP---LSAHLWADSDRIIQVFT 567

Query: 328 KC-PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
                       G   +     L         ++E +     L     +        ++ 
Sbjct: 568 NLISNAIKFSPTGATVWVTAKILE------KGELEKSQTPIPLYPQTPIPLYPHTPIILF 621

Query: 387 YRSD-RTCIAAS-----------ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
              D    I A                  +      L +        +   +   ++   
Sbjct: 622 AVKDQGRGIPADKLESIFERFGQVDASDSRKKGGTGLGLAICRSILQHHGGQIWAESTSG 681

Query: 435 PEDV----------DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
                         +    +  + +         E+ S  I   + +  + + 
Sbjct: 682 EGSTFSFTLPIFPEEQNKEEEFLHLSHAAPQQPTESISPLILHCDDDLSVRAV 734



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/160 (10%), Positives = 42/160 (26%), Gaps = 6/160 (3%)

Query: 57  QNQESVSNTNYLDSENTFVFDPIPRTVRF-TWNIDAHGYLKEISEELPKTIGNYAFKMIG 115
            +  +         E+ + +  + +T     +  DA G     +E     IG+    ++G
Sbjct: 187 SDITARKAAEAALRESEYRYATLAQTAPVGIFRNDAFGRCIFANERACNLIGSPLKDILG 246

Query: 116 MRLCDVSDILH-IDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNRE 174
                       +         +++   +  +          +   +   A+P    N E
Sbjct: 247 EGWIQSLHPDDRLRIVREWNQAVQQNLPFKAEYRFRHPNN--VINWVIYQAIPERGSNGE 304

Query: 175 FSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214
            +G+   G +               L +      E     
Sbjct: 305 VTGY--IGTMTDINDRKRAEEELLHLSQALESAVEGISQL 342


>gi|332701935|ref|ZP_08422023.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
            Walvis Bay]
 gi|332552084|gb|EGJ49128.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
            Walvis Bay]
          Length = 1232

 Score =  389 bits (998), Expect = e-105,   Method: Composition-based stats.
 Identities = 113/652 (17%), Positives = 235/652 (36%), Gaps = 33/652 (5%)

Query: 184  VHVNRVDNDPRALGKRLDKKFSHLHE------IKKGHSSVEKEKYDIFSQQSPPPHLRMK 237
            +       +     ++LD     + E        K   S+      +         +   
Sbjct: 425  LRHLSARAEAEQRARQLDAAIEAMAEGLIIFDTDKSIQSINSAGKRLLGYTDENRDMPFA 484

Query: 238  NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297
             +++         +  ++          E+   ++         Q         +++   
Sbjct: 485  ERLAKYKVRPLVGEIDIENTPIAKALRGEALRKDEFLIEPEPGRQLHLMASASPIRSRQG 544

Query: 298  ESFEYLSHRNHPSLSAYFDE-----------GENLTPETVDKCPIP-FFVYSHGNLFYAN 345
            E    ++     + S   +                    +D   +    +     L  AN
Sbjct: 545  EVTGAVAVFQDITESKKLERDRENLIAALQVERARLKALIDNALVGIVLLDKKARLVMAN 604

Query: 346  PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405
            P+   +        +         L  P           ++  +    +  S  L   + 
Sbjct: 605  PAAEAILGVPLTPGMRHFALEKLDLRQPDGEPLPIQALPVVRAALGGEVHKSVELSAARP 664

Query: 406  NR---ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
            +       + +        N+  +     G+  +  + +  +  +             + 
Sbjct: 665  DGRENGGRIHLLASAMPVRNRQGKLKGAVGVFEDVTERKRAEEALRESEEMFHKAFVMSP 724

Query: 463  DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522
            + + I   +G  L  N A S+LFGY  ++++ +         TP +   ++ +I      
Sbjct: 725  EMLTITTLDGRYLDVNEAFSRLFGYSRDEVMGRRSQEIGHWLTPELRECFVRQIQRGGRV 784

Query: 523  QTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES 582
            Q +E        +   L L   + ++    C      DI+E  + + ++  AK+ AE  +
Sbjct: 785  QNMEVEFRTKDGDPCTLLLSADVVRIGGKPCILTVGADITERIRMEGEMRRAKEQAEIAN 844

Query: 583  SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
              KSDFLA +SHEIRTP+  ++G  ++   Q+       R  EY     +S + +L I+ 
Sbjct: 845  RAKSDFLANMSHEIRTPMNGVMGMIDLSLMQKLPT----RVREYQIMAKKSADHLLSIIG 900

Query: 643  DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADL 701
            D+LD+SKIE+G+M L  +   + + V   +  + L A +K + +  +   +IP +L  D 
Sbjct: 901  DILDLSKIEAGRMELTEDIFDVRDLVEGTVRPLALTAADKGLKLLHAVDADIPPLLCGDP 960

Query: 702  RSVKQIALNILSNAIHFTPSGGQIIISTTH------TSNEEVILRVRDTGVGMTNYELEK 755
              ++Q+  N++SNA+ FT  G +++++              ++  V DTG+G+   +L  
Sbjct: 961  VRLRQVLANLVSNAVKFTHKG-RVLVNVERTGHDLPRDEVRLLFSVSDTGIGIPREKLSL 1019

Query: 756  AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
              + F Q   +   R  GTGLGL ++K +V+   G   + S   KG+     
Sbjct: 1020 IFESFSQAEEATHARYGGTGLGLAISKRLVEMMGGHIGVESVMGKGSRFFFT 1071



 Score = 91.2 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 59/550 (10%), Positives = 135/550 (24%), Gaps = 47/550 (8%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN---------HIGDL 136
            W ID  G L  +++   K +   A +M    + D+   L +   +          I   
Sbjct: 42  VWLIDMDGNLLLLNKAAIKNMEQLASEM-PRNMPDLLRALDVRTPDGRRVPPEELPIMQA 100

Query: 137 LKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFG-IVHVNRVDNDPRA 195
           L  +              ++  + ++++A P+     E +G       +   R       
Sbjct: 101 LHGE--VDRGRAFLVKAVSDTELFLEVSAAPLLGPQGEVTGALAVARDMTTLRRTARFME 158

Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255
              R  ++  +          ++          +     R +     L        +  +
Sbjct: 159 PQVRFTEENPNPVLRVNASGILQYANTASVPFLNALRTDRGEVVPEPLRGAMLRCLEHGE 218

Query: 256 TEKYPLLTSEESSLPEQEDFHTI------NLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
             +  L  +  + +                L+   +KQ    L          L      
Sbjct: 219 CGELELAANGRTYIFSLSPVRGDGYVNFYGLDITGRKQIEERLTQQMAHREVLLRASRDM 278

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYSHGNL---FYANPSFLLLTKYKSVDDIEIAGGL 366
                 +       +   +        +   L         F                  
Sbjct: 279 LSETNRESLLRRVLDLAREVAGADMALAGHELRQGLVTVDVFSHAQGIPPCGAPREIPEG 338

Query: 367 STLLDAPKLSDNNAIKPVMLYRSD----------RTCIAASARLHTIQWNRENSLA-MTF 415
              +    +    A   +                     A     +I  +  +    +  
Sbjct: 339 RDNIMERLMGQGQATVRMSRSEWAKFASSLDLPGGHPRLAGLLGASIAHDAGSFCGFLLL 398

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRI----NKRKMEIEVMQLCSILEATSDGIAIINRE 471
               +     E+    G         +     + + E    QL + +EA ++G+ I + +
Sbjct: 399 SHKREGEFTAEDEAFLGQLAALTSLGLRHLSARAEAEQRARQLDAAIEAMAEGLIIFDTD 458

Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT-----EILSLDLRQTLE 526
             I S N A  +L GY  ++    PF   L +     +   +         +L      +
Sbjct: 459 KSIQSINSAGKRLLGYT-DENRDMPFAERLAKYKVRPLVGEIDIENTPIAKALRGEALRK 517

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKES 582
              L   +  + L L      +               DI+E K+ +    +     + E 
Sbjct: 518 DEFLIEPEPGRQLHLMASASPIRSRQGEVTGAVAVFQDITESKKLERDRENLIAALQVER 577

Query: 583 SHKSDFLARV 592
           +     +   
Sbjct: 578 ARLKALIDNA 587



 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/152 (8%), Positives = 38/152 (25%), Gaps = 11/152 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCD-------VSDILHIDPNNHIGDLLKRQN 141
           +D    L   +      +G      +     +         + L I     +   L  + 
Sbjct: 594 LDKKARLVMANPAAEAILGVPLTPGMRHFALEKLDLRQPDGEPLPIQALPVVRAALGGEV 653

Query: 142 TWYGKTTLWPIEGT--NLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199
               + +    +G      + +  +A+P+ +R  +  G    G+              + 
Sbjct: 654 HKSVELSAARPDGRENGGRIHLLASAMPVRNRQGKLKGA--VGVFEDVTERKRAEEALRE 711

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231
            ++ F     +     ++              
Sbjct: 712 SEEMFHKAFVMSPEMLTITTLDGRYLDVNEAF 743



 Score = 44.2 bits (103), Expect = 0.097,   Method: Composition-based stats.
 Identities = 29/279 (10%), Positives = 75/279 (26%), Gaps = 19/279 (6%)

Query: 49  FEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGN 108
           FE      + +E++  +  +     FV  P   T+         G   +++E   +  G 
Sbjct: 696 FEDVTERKRAEEALRESEEM-FHKAFVMSPEMLTI-----TTLDGRYLDVNEAFSRLFGY 749

Query: 109 YAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPI 168
              +++G R  ++   L  +        ++R          +  +       + L+A  +
Sbjct: 750 SRDEVMGRRSQEIGHWLTPELRECFVRQIQRGGRVQNMEVEFRTK-DGDPCTLLLSADVV 808

Query: 169 YSRNREFSGFRGFGIV-HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ 227
                   G      V              +R  ++    +  K    +    +      
Sbjct: 809 R-----IGGKPCILTVGADITERIRMEGEMRRAKEQAEIANRAKSDFLANMSHEIRT--- 860

Query: 228 QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287
              P +  M     SL +    +    +           S + +  D   I   +    +
Sbjct: 861 ---PMNGVMGMIDLSLMQKLPTRVREYQIMAKKSADHLLSIIGDILDLSKIEAGRMELTE 917

Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
               +++  + +   L+              +   P  +
Sbjct: 918 DIFDVRDLVEGTVRPLALTAADKGLKLLHAVDADIPPLL 956



 Score = 39.6 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 16/130 (12%), Positives = 39/130 (30%), Gaps = 11/130 (8%)

Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE------QNTPSVMNHYLT 514
             + + +I+ +G +L  N+A  K       ++  +     L        +   V    L 
Sbjct: 38  MLEAVWLIDMDGNLLLLNKAAIKNMEQLASEMP-RNMPDLLRALDVRTPDGRRVPPEELP 96

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS----LTMHDISEWKQEKNK 570
            + +L       +  L     +  L L +    L               D++  ++    
Sbjct: 97  IMQALHGEVDRGRAFLVKAVSDTELFLEVSAAPLLGPQGEVTGALAVARDMTTLRRTARF 156

Query: 571 LSHAKKIAEK 580
           +    +  E+
Sbjct: 157 MEPQVRFTEE 166


>gi|327537685|gb|EGF24396.1| sensory transduction histidine kinase [Rhodopirellula baltica WH47]
          Length = 935

 Score =  389 bits (998), Expect = e-105,   Method: Composition-based stats.
 Identities = 126/751 (16%), Positives = 275/751 (36%), Gaps = 34/751 (4%)

Query: 80  PRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD-LLK 138
             + +  W  DA G + E S       G    +M+G+   +        P        ++
Sbjct: 35  DASAQIVWMTDADGNVTEDSPSWRAFTGQEIDQMMGIGWTNAVHADDRSPALEAWKLAVQ 94

Query: 139 RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
               +  +  L    G   YV + ++ +     +     + G  I           A  +
Sbjct: 95  NVEDFVAEYRLRHHLGH--YVRMQVSGVAQRRSDGSIDRWGGMNI--DISEWKQREAESE 150

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH-------KD 251
             +     + +      +V      +             ++   + + +           
Sbjct: 151 YREHHLRDVIDSTGNFIAVLDLDGTMLEVNELALVTGGVSREDVIGKPFWECVWWNFDPK 210

Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
              +  +Y    +   S+       ++          F  +++        +        
Sbjct: 211 VRHQIHEYCQRVAAGESIRCDTPCWSVADGARPVDLSFRPIRDTDGNVTHLVPSGVDILD 270

Query: 312 SAYFDEGENLTPETVDKC-----PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
                +    + E V             +   G + Y+N +FL +T +   + I      
Sbjct: 271 RQTAVDELRRSDELVRTIAENSTQALVMMDDRGYVTYSNNAFLKMTGFDDTE-IRSRPLH 329

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
             +           +    + R+        A          ++  +         Q  +
Sbjct: 330 DLIHHHYPDGRPYPMAECPIDRALPEDFTVRAHEDLFFRKDGSTFEVLCEASPVF-QDGK 388

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
            +       +  D ++++ K+ +   +L    +    GI  ++     ++ +  + ++ G
Sbjct: 389 PVSTVIEVSDVTDLKLSELKIRLSAERLAVAADVAGLGILHVDLMSQSVTYSAEMKRILG 448

Query: 487 YPVEDILRKPFT---VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +  +  +         F+  +       +   +LS +  ++          + K+  +R+
Sbjct: 449 WDDDSAVPSQSAGTPDFVHIDDRERYACHYETMLSANFAKSRSIDYRIVRPDAKVRWVRL 508

Query: 544 IIKKLPFS-----SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
             K L             TM DI+  ++ +  L  A+  A+  S  KS FLA +SHEIRT
Sbjct: 509 QTKTLIDEQTGKPDQLVGTMLDITRQRKFEMDLKAARDAAQFASQSKSKFLANMSHEIRT 568

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
           P+TAI+G++E++              ++   I R+G+ +LDI++++LD+SKIE+ K+ ++
Sbjct: 569 PMTAILGYAELLGEHDLPA----EACDFLKTIRRNGDYLLDIIDEILDLSKIEADKLEMN 624

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIH 717
            E   L   V +  S++ + A+EK + IR  +   +PR I +D + +KQI +N++ NAI 
Sbjct: 625 HELFDLMRVVEDVRSIMDVRASEKDLQIRVCYDGKLPRRIQSDPKRLKQILINLVGNAIK 684

Query: 718 FTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
           FT  G  + ++  +     +   + D+G+GM++ +  K  +PF Q  +S      GTGLG
Sbjct: 685 FTRQG-HVDLAVRYVD-GHLQFDITDSGIGMSDDQKAKLFQPFSQGDSSVSRDFGGTGLG 742

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           L +++ +     G+ Y+ S   +G+      
Sbjct: 743 LAISRRLAKMLGGEIYVQSQLRQGSTFTATI 773



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 18/167 (10%), Positives = 56/167 (33%), Gaps = 6/167 (3%)

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
           Q G + + + T     ++         +++A++  + + + +G +   + +     G  +
Sbjct: 6   QIGDDEDILVTLSEITELRRSRELFQLLVDASAQIVWMTDADGNVTEDSPSWRAFTGQEI 65

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
           + ++   +T  +  +  S         +     +               + +++      
Sbjct: 66  DQMMGIGWTNAVHADDRSPALEAWKLAVQN--VEDFVAEYRLRHHLGHYVRMQVSGVAQR 123

Query: 550 FSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
            S      +     DISEWKQ + +  + +           +F+A +
Sbjct: 124 RSDGSIDRWGGMNIDISEWKQREAESEYREHHLRDVIDSTGNFIAVL 170


>gi|119509677|ref|ZP_01628823.1| two-component hybrid sensor and regulator [Nodularia spumigena
           CCY9414]
 gi|119465696|gb|EAW46587.1| two-component hybrid sensor and regulator [Nodularia spumigena
           CCY9414]
          Length = 896

 Score =  389 bits (998), Expect = e-105,   Method: Composition-based stats.
 Identities = 110/747 (14%), Positives = 245/747 (32%), Gaps = 52/747 (6%)

Query: 94  YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD---LLKRQNTWYGKTTLW 150
            +  ++    +     + +  G  L ++   L+I  N    +   ++K       +  ++
Sbjct: 170 RVDYMNAAACEFSQMSSGEQ-GEYLGEIL--LNIRENGLFDECCQVVKTGQPLVKEALVY 226

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
               +       +        +   + +                A  +   +    + + 
Sbjct: 227 TSLNSQQQSTRVIDIRITKMGDGFVAAW------RDVTEKKQAEAKLRESQQFIERIADT 280

Query: 211 KKGHSSV----------EKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
             G   V             +       +      M ++  S   +   +   L+  +  
Sbjct: 281 TPGILYVYDLMKQQNVYTNSQVINLLGYTCQQIKGMDSEFLSTLMHPEDRARFLEHLQLI 340

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS-KESFEYLSHRNHPSLSAYFDEGE 319
            +      L  +      N               N      + +      +     +E  
Sbjct: 341 NVAENGEILEFEYRMRHANGEWLWFYSRDTVFNRNVDGSPRQIVGTAFDITERKQAEEQL 400

Query: 320 NLTPETVDKCPIPF--FVYSHG---NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
            L+ E            +Y      N+         +  Y   +        S      K
Sbjct: 401 RLSNERFQLAAAAVNCLIYDRDIKNNIVSRTEGLTRILGYSLEEA-----DPSAEWWIEK 455

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
           +   +  + +                + ++   +    +        +   + +   G  
Sbjct: 456 VHPEHRERLLNQLTDFFNRENYYTIEYKMRHKDQEYRYVLDQGIIVQDPHGQVVRTVGSV 515

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
            +  + +  +  +     +   + +     +   N +G     N+   +L G  +E+   
Sbjct: 516 TDISERKQAETALRESEERYRYLSDLIPQLVWTCNSQGECEYVNQRWYELTGQMLEEAKG 575

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC- 553
             +T  +  +  S +    T+ L        E+       +       +    +      
Sbjct: 576 FGWTKVIHPDDLSSVIPEWTQALQRKKP--YEQEMRYQKHDGSYCWHLVRNVAIKDEQGR 633

Query: 554 ---YSLTMHDISEWKQEKNKLSH-------AKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
              +  T  DI   KQ + +          A+  AEK +  K +F+A VSH++R+PL AI
Sbjct: 634 VVKWFGTATDIDHRKQLEAERDRLLQREQAARSAAEKANQTKDEFVAMVSHDLRSPLNAI 693

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +G++++++ ++  P            I+R+      ++ DLL++S+I  G++ L   PV+
Sbjct: 694 LGWAKLLRTRQLPP---DTVTNALATIERNAQSQEKLLEDLLNMSRILRGQLQLEVCPVN 750

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
           L   V  ++      A+ K I + +    +IP I+ D   + Q+  N+LSNAI FTPSGG
Sbjct: 751 LVNIVKASVETAYPSAHAKGIHLASVIDESIPPIVGDTHRLLQVLGNLLSNAIKFTPSGG 810

Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
           ++ +    + + E++++V DTG+G+    L      + Q       +  G GLGL +A+ 
Sbjct: 811 RVQVQLAKSDDSEILIQVSDTGLGIKPEFLPHVFDRYRQAH--CTAKHSGLGLGLAIARH 868

Query: 784 MVDANMGKFYIFST-PAKGTLIEIIFP 809
           +V+ + G     S     G    I  P
Sbjct: 869 LVELHGGTIQAHSQGEGLGATFSIKLP 895



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/291 (13%), Positives = 80/291 (27%), Gaps = 13/291 (4%)

Query: 55  TDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI 114
           TD ++   + T   +SE  + +       +  W  ++ G  + +++   +  G    +  
Sbjct: 516 TDISERKQAETALRESEERYRYLSDLIP-QLVWTCNSQGECEYVNQRWYELTGQMLEEAK 574

Query: 115 GMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNR 173
           G     V     +          L+R+  +  +      +G+  Y    +  + I     
Sbjct: 575 GFGWTKVIHPDDLSSVIPEWTQALQRKKPYEQEMRYQKHDGS--YCWHLVRNVAIKDEQG 632

Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH 233
                + FG            A   RL ++        +  +  + E   + S     P 
Sbjct: 633 RVV--KWFGTATDIDHRKQLEAERDRLLQREQAARSAAEKANQTKDEFVAMVSHDLRSPL 690

Query: 234 LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293
             +      L       D V        L + E +   QE      LN     +    L+
Sbjct: 691 NAILGWAKLLRTRQLPPDTVTNA-----LATIERNAQSQEKLLEDLLNMSRILRGQLQLE 745

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYA 344
                    +      +  +   +G +L     +  P    V     L   
Sbjct: 746 VCPVNLVNIVKASVETAYPSAHAKGIHLASVIDESIPP--IVGDTHRLLQV 794



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/145 (11%), Positives = 47/145 (32%), Gaps = 10/145 (6%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINR---------EGIILSTNRAVSKLFGYPVEDILRK 495
           ++++    +  + +E   D   I +             +   N A  +       +   +
Sbjct: 133 QELQRSEERFRTSVENMLDCFGIFSAVRYETGEILNFRVDYMNAAACEFSQMSSGE-QGE 191

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555
                L     + +     +++        E +   S   ++  +  I I+       + 
Sbjct: 192 YLGEILLNIRENGLFDECCQVVKTGQPLVKEALVYTSLNSQQQSTRVIDIRITKMGDGFV 251

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEK 580
               D++E KQ + KL  +++  E+
Sbjct: 252 AAWRDVTEKKQAEAKLRESQQFIER 276


>gi|307592365|ref|YP_003899956.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7822]
 gi|306986010|gb|ADN17890.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7822]
          Length = 1490

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 123/758 (16%), Positives = 255/758 (33%), Gaps = 52/758 (6%)

Query: 73   TFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH 132
              + D      RF         +  ++E   +       +++      V     ++  N 
Sbjct: 759  AIIEDQTEMIARFL----PDSTVLFVNEAYCRYFNIKREEILNKSYSPVIYEADLEKVNQ 814

Query: 133  IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192
            + + +    T         I+G             ++         +  G          
Sbjct: 815  LVESM-SIETPMLVIENRVIDGRGEVRWTQWVNRMLFDNQGNLIELQSVG--RDITELKQ 871

Query: 193  PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD 252
                 +   ++     E             D      P     +  K   LT  ++  + 
Sbjct: 872  VEGALRESQERLQLALEASGDGIWDWNILTDEVYL-DPQFFQMLGYKADELTSSFSTWEQ 930

Query: 253  VLKTEKYPL--------LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ-NNSKESFEYL 303
            ++  E            L +            T +        Y   +  +   +    +
Sbjct: 931  LVHPEDLIWVKERLEKHLENTAVDYRFDYRLQTKSNEWKWIANYGKVVAIDEKGKPLRMI 990

Query: 304  SHRNHPSLSAYFDEGENLTPE----TVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSV 357
            +     +    F+     + E     +D   I F+ +    G L   N +   L    S 
Sbjct: 991  AIHRDINDRKLFEAALLESEEQRRLALDLTHIGFWDWQIPTGQLI-WNENHFTLLGLPS- 1048

Query: 358  DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
                               ++      +  +S  T     +    I  +  +   +    
Sbjct: 1049 ---NNPKPRYEDWRDCIHPEDKERVEQLYTKSIETHTDYESEYRIIHPDG-SVHWLMARA 1104

Query: 418  FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
                +   + +   G+  +  D +  +  +     +  S+L+     +  ++ +G I   
Sbjct: 1105 KAIYDLEGQPVRSLGVLLDITDRKHIEASLRESDRRWQSLLDNVQLVVIGLDLDGYIEYA 1164

Query: 478  NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
            N    KL GY +E++L + +  FL       +     E+L  +     +   +  + EE+
Sbjct: 1165 NPFFLKLTGYQLEEVLGQYWFDFLNPQEKHPLKIIFKEVLEQNFHPYYQNSVMTKSGEER 1224

Query: 538  LLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
            +++    I K              DI+E  + +                K++F++ VSHE
Sbjct: 1225 MIAWNNTILKDVAGEPIGTMSIGEDITERDKVE--------------RMKAEFISVVSHE 1270

Query: 596  IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
            +RTPLT++      + +++     +P             + ++ +VND+LD+ ++ESGK+
Sbjct: 1271 LRTPLTSMQAAL-SLLSEKIIDPNSPEGEATIQIATEGTDRLVRLVNDILDLERLESGKI 1329

Query: 656  NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715
             L     ++ + +  AI+ +Q  AN+  I ++    +   +I AD   + Q+  N+LSNA
Sbjct: 1330 RLKKSLCNVIDLIETAIAQMQEMANQANITLKFILCS--FQIEADADRILQVLTNLLSNA 1387

Query: 716  IHFTPSGGQIIISTTHTSNEEV----ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
            I F+P    I +S     +E V       VRD G G+ +  L+     FGQ+  S     
Sbjct: 1388 IKFSPHHSTIELSVEEQQDEGVKGVLRFGVRDQGRGIPSAHLDSIFARFGQVDASDSRTK 1447

Query: 772  EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             GTGLGL + +++V+ + GK +  S   +G+      P
Sbjct: 1448 GGTGLGLAICRSIVEQHGGKIWAESIAGQGSTFYFTLP 1485



 Score =  123 bits (310), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 60/510 (11%), Positives = 142/510 (27%), Gaps = 28/510 (5%)

Query: 87   WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYG 145
            W  D++G +   ++   +T      ++IG  L ++          N+I  ++K Q T   
Sbjct: 644  WITDSNGQMLYANQTYYQTFQLLNQEVIGHNLFELYPDEIAQHYLNNIQAVVKSQTTLET 703

Query: 146  KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
                   +GT     +    +P  S   +  G    GI              +  + ++ 
Sbjct: 704  SRHSLKPDGTMGEFLVYNFLVPNSSDE-QLVG----GIAVDITERKRIEKALQASEIRYR 758

Query: 206  HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS----SLTEYYAHKDDVLKTEKYPL 261
             + E +    +       +              +      S +      D     +    
Sbjct: 759  AIIEDQTEMIARFLPDSTVLFVNEAYCRYFNIKREEILNKSYSPVIYEADLEKVNQLVES 818

Query: 262  LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL----SAYFDE 317
            ++ E   L  +             +     L +N     E  S     +          E
Sbjct: 819  MSIETPMLVIENRVIDGRGEVRWTQWVNRMLFDNQGNLIELQSVGRDITELKQVEGALRE 878

Query: 318  GENLTPETVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
             +      ++      + ++      Y +P F  +  YK+ D++  +      L  P+  
Sbjct: 879  SQERLQLALEASGDGIWDWNILTDEVYLDPQFFQMLGYKA-DELTSSFSTWEQLVHPE-- 935

Query: 377  DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
            D   +K  +    + T +           + E      +      ++  + +    I  +
Sbjct: 936  DLIWVKERLEKHLENTAVDYRFDYRLQTKSNEWKWIANYGKVVAIDEKGKPLRMIAIHRD 995

Query: 437  DVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRK 495
              D ++ +  +     Q    L+ T  G        G ++  N     L G P  +   +
Sbjct: 996  INDRKLFEAALLESEEQRRLALDLTHIGFWDWQIPTGQLI-WNENHFTLLGLPSNNPKPR 1054

Query: 496  --PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553
               +   +       +    T+ +        E        +  +  L    K +     
Sbjct: 1055 YEDWRDCIHPEDKERVEQLYTKSIET--HTDYESEYRIIHPDGSVHWLMARAKAIYDLEG 1112

Query: 554  Y----SLTMHDISEWKQEKNKLSHAKKIAE 579
                    + DI++ K  +  L  + +  +
Sbjct: 1113 QPVRSLGVLLDITDRKHIEASLRESDRRWQ 1142



 Score =  117 bits (292), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 42/545 (7%), Positives = 128/545 (23%), Gaps = 66/545 (12%)

Query: 88   NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL-LKRQNTWYGK 146
             IDA G     +    K  G      +G    +                 L+ +  +  +
Sbjct: 487  QIDADGMCIYSNRRWQKMSGQDLTNSLGYGWLEAIHPEDRGLCLRGWKTYLQGKGRFLSE 546

Query: 147  TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP------------- 193
              L   +    +V + +A  P+ S   E  G                             
Sbjct: 547  FRLLTPQKKVHWVWVQVA--PMQSATGEIIGH--VCTYEEITARKQAELALQKLNEELEI 602

Query: 194  -------------------RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL 234
                                   +  + +F          + +      +          
Sbjct: 603  RVSQRTVELEQELLRRERIEQEIRHSEARFQAFMAHNPACAWITDSNGQMLYANQTYYQT 662

Query: 235  --RMKNKVSSLTEYYAHKDDVLK-----TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287
               +  +V     +  + D++ +      +      +   +                   
Sbjct: 663  FQLLNQEVIGHNLFELYPDEIAQHYLNNIQAVVKSQTTLETSRHSLKPDGTMGEFLVYNF 722

Query: 288  YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANP 346
                  +        +       +       E      ++        +     + + N 
Sbjct: 723  LVPNSSDEQLVGGIAVDITERKRIEKALQASEIRYRAIIEDQTEMIARFLPDSTVLFVNE 782

Query: 347  SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
            ++      K  + +  +        +P + + +  K   L  S           + +   
Sbjct: 783  AYCRYFNIKREEILNKSY-------SPVIYEADLEKVNQLVESMSIETPMLVIENRVIDG 835

Query: 407  RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI- 465
            R       ++     +     +    +  +  + +  +  +     +L   LEA+ DGI 
Sbjct: 836  RGEVRWTQWVNRMLFDNQGNLIELQSVGRDITELKQVEGALRESQERLQLALEASGDGIW 895

Query: 466  ---AIINREGIILSTNRAVSKLFGYPVEDIL--RKPFTVFLEQNTPSVMNHYLT-EILSL 519
                + +     +  +    ++ GY  +++      +   +       +   L   + + 
Sbjct: 896  DWNILTDE----VYLDPQFFQMLGYKADELTSSFSTWEQLVHPEDLIWVKERLEKHLENT 951

Query: 520  DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKK 576
             +    +      + E K ++    +  +              DI++ K  +  L  +++
Sbjct: 952  AVDYRFDYRLQTKSNEWKWIANYGKVVAIDEKGKPLRMIAIHRDINDRKLFEAALLESEE 1011

Query: 577  IAEKE 581
                 
Sbjct: 1012 QRRLA 1016



 Score =  104 bits (260), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 36/320 (11%), Positives = 101/320 (31%), Gaps = 13/320 (4%)

Query: 273 EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR--NHPSLSAYFDEGENLTPETVDKCP 330
           E+       +   ++    L+    +    L         +       E      +   P
Sbjct: 581 EEITARKQAELALQKLNEELEIRVSQRTVELEQELLRRERIEQEIRHSEARFQAFMAHNP 640

Query: 331 IPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389
              ++   +G + YAN ++    +  + + I         L      +        +   
Sbjct: 641 ACAWITDSNGQMLYANQTYYQTFQLLNQEVIGHN------LFELYPDEIAQHYLNNIQAV 694

Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449
            ++        H+++ +      + +      +   + +   GI  +  + +  ++ ++ 
Sbjct: 695 VKSQTTLETSRHSLKPDGTMGEFLVYNFLVPNSSDEQLVG--GIAVDITERKRIEKALQA 752

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
             ++  +I+E  ++ IA    +  +L  N A  + F    E+IL K ++  + +     +
Sbjct: 753 SEIRYRAIIEDQTEMIARFLPDSTVLFVNEAYCRYFNIKREEILNKSYSPVIYEADLEKV 812

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQE 567
           N  +  +        +E   +    E +       +      +         DI+E KQ 
Sbjct: 813 NQLVESMSIETPMLVIENRVIDGRGEVRWTQWVNRMLFDNQGNLIELQSVGRDITELKQV 872

Query: 568 KNKLSHAKKIAEKESSHKSD 587
           +  L  +++  +       D
Sbjct: 873 EGALRESQERLQLALEASGD 892



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 35/372 (9%), Positives = 94/372 (25%), Gaps = 41/372 (11%)

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
           L+ + + LL     S P       I L Q    Q    +Q +               +  
Sbjct: 406 LEEQLWGLLIVHHCSAPRVWQSSEITLLQRLATQVSIAVQQSELYEQRGRELSERKRIQN 465

Query: 314 YFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
              + E L        PI    + + G   Y+N  +  ++     + +   G L  +   
Sbjct: 466 ILQKSEELFRSLSAAAPIGICQIDADGMCIYSNRRWQKMSGQDLTNSL-GYGWLEAI--H 522

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
           P+             +     ++       +   ++    +        +   E +    
Sbjct: 523 PEDRGLCLRGWKTYLQGKGRFLS----EFRLLTPQKKVHWVWVQVAPMQSATGEIIGHVC 578

Query: 433 IEPEDVDTRINK--------------------------------RKMEIEVMQLCSILEA 460
              E    +  +                                +++     +  + +  
Sbjct: 579 TYEEITARKQAELALQKLNEELEIRVSQRTVELEQELLRRERIEQEIRHSEARFQAFMAH 638

Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520
                 I +  G +L  N+   + F    ++++                 + +  ++   
Sbjct: 639 NPACAWITDSNGQMLYANQTYYQTFQLLNQEVIGHNLFELYPDEIAQHYLNNIQAVVKSQ 698

Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL-TMHDISEWKQEKNKLSHAKKIAE 579
                 + +L          +   +               DI+E K+ +  L  ++    
Sbjct: 699 TTLETSRHSLKPDGTMGEFLVYNFLVPNSSDEQLVGGIAVDITERKRIEKALQASEIRYR 758

Query: 580 KESSHKSDFLAR 591
                +++ +AR
Sbjct: 759 AIIEDQTEMIAR 770



 Score = 84.7 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 28/302 (9%), Positives = 81/302 (26%), Gaps = 26/302 (8%)

Query: 331 IPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389
           I  + +     +   N  +  L  Y+             L       D+       L ++
Sbjct: 43  IGVWEWDITTGVMKGNDYYYRLLGYEP----GNLEPSYRLWRNQIYPDDVGSVENKLIQA 98

Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449
                        +  +               N+  + +   G+  +  + +  +  +  
Sbjct: 99  LTKKTGYDVEFRVLLKDG-TIRWQQSKGQGIYNEAGQAVRMVGVTFDISERKEREETLAK 157

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
           +  +L   +      +A+++     ++ ++    ++     + +       +  N P   
Sbjct: 158 DEQKLSLFVRCAPVSVAMLDTNMNYIAVSQRWVDVYHLGEIEAILGHCHYEIFPNIPQRW 217

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQE 567
                  L  +L +  E          + L   +   +          + + DI+E KQ 
Sbjct: 218 REIHQRGLVGELIKCEEDRFTLPDGTVQWLKWEVQPWRHKTGQIGGIFIFVEDITELKQA 277

Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
           +  L    +            L  ++ +IR  L           ++      + R  ++ 
Sbjct: 278 QTTLEQQIQQEY--------LLGEIASDIRRSLN---------LDEVLSRTVH-RVRDFL 319

Query: 628 NY 629
             
Sbjct: 320 QT 321



 Score = 48.1 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 11/180 (6%), Positives = 49/180 (27%), Gaps = 12/180 (6%)

Query: 279 NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK----CPIPF- 333
           +     ++     + N + ++   +      S     +E      + +       P+   
Sbjct: 115 DGTIRWQQSKGQGIYNEAGQAVRMVGVTFDISERKEREETLAKDEQKLSLFVRCAPVSVA 174

Query: 334 FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393
            + ++ N    +  ++ +     ++ I          + P+       + +         
Sbjct: 175 MLDTNMNYIAVSQRWVDVYHLGEIEAILGHCHYEIFPNIPQ-----RWREIHQRGLVGEL 229

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
           I       T+         + +      ++  +         +  + +  +  +E ++ Q
Sbjct: 230 IKCEEDRFTLP--DGTVQWLKWEVQPWRHKTGQIGGIFIFVEDITELKQAQTTLEQQIQQ 287


>gi|197117615|ref|YP_002138042.1| sensor histidine kinase response regulator lipoprotein [Geobacter
           bemidjiensis Bem]
 gi|197086975|gb|ACH38246.1| sensor histidine kinase response regulator lipoprotein, Cache,
           HAMP, PAS, PAC, PAS and HPT domain-containing protein
           [Geobacter bemidjiensis Bem]
          Length = 1229

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 123/645 (19%), Positives = 234/645 (36%), Gaps = 30/645 (4%)

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247
           R        G  +  +        K  +S        F Q+     LR    + ++  + 
Sbjct: 235 RALLGFEGAGDTITSRGVPSLSSFKRLNSTGWILGANFPQREAYAPLREAKTLLAVALFI 294

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
           +    VL T  + +       L        +   +   +    +  +        L+   
Sbjct: 295 SLCGTVLVTHLF-MRRLTSPLLTFIGHVQGMGDQERELEPVAISTGDEIGTL--ALAFNR 351

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGL 366
                             +D+ P+   +    G + Y NP+F  +T Y+  D +      
Sbjct: 352 MVQELQRQRTAARELRLAIDQAPVTVMITDPQGGIEYVNPNFTKVTGYQPEDALGRDP-- 409

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
              +           + +              R              +       +   E
Sbjct: 410 -REIIGTGCYPEEFYEELWGTLRSGKEWHGEIRNKRKS---GELYWESVSISPVKSPRGE 465

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
                G+  +    +  +  +     Q+  +LE+T++ I  I+  G     N + ++L G
Sbjct: 466 INNFVGVMEDITQRKRAEEALIRSDEQIRLLLESTAEAIFGIDLMGNCTFANPSCARLLG 525

Query: 487 Y-PVEDILRKPFTVFLEQNTPSVMNHYLTEILS----LDLRQTLEKITLGSTKEEKLLSL 541
           +   + +L K   + +   T     + + E  +           +   +   ++    ++
Sbjct: 526 HADPDQLLGKNMHLLMHHTTSEGKPNPVQECAAYQVLRGGEGVHKDDDVFWRRDGSSFAV 585

Query: 542 RIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
                            +T  DISE K+ + +L  A + AE  +  KS+FLA +SHEIRT
Sbjct: 586 EYWSYPQLHDGELVGGVVTFFDISERKRAEAELIRATEAAEAATRAKSEFLANMSHEIRT 645

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
           P+ A +G   ++++       +     Y      +  ++L ++ND+LD SK+E+G+M L 
Sbjct: 646 PMNAALGMLYLLQHTEL----SETQKSYLEKAQTASGVLLGVINDILDFSKVEAGRMVLE 701

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIH 717
             P  +   +S+  ++ Q    EK I   T    +IP  +  D   + Q+ LN+ SNAI 
Sbjct: 702 TTPFRMAAVLSDLQTVAQATLREKPIEFVTRCGADIPEQLFGDPLRLGQVLLNLASNAIK 761

Query: 718 FTPSGG-QIIISTTHTSNEEV--ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           FT  G  ++ ++       EV     V DTG+GMT  + E    PF Q  +S   +  GT
Sbjct: 762 FTEKGKVEVEVALLAQEQGEVTLRFSVADTGIGMTTEQQESVFTPFTQADSSTTRKYGGT 821

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII----FPLYDTSH 815
           GLGL +++ +V    G+ ++ S P +G+    I     P    + 
Sbjct: 822 GLGLAISRELVQLMGGRMWVVSEPGRGSTFSFIAHLALPAASGAQ 866



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 18/133 (13%), Positives = 41/133 (30%), Gaps = 6/133 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV--SDILHIDPNNHIGDLLKRQNTWYGK 146
            D  G ++ ++    K  G      +G    ++  +     +    +   L+    W+G+
Sbjct: 380 TDPQGGIEYVNPNFTKVTGYQPEDALGRDPREIIGTGCYPEEFYEELWGTLRSGKEWHGE 439

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                  G   +  + ++  P+ S   E + F   G++              R D++   
Sbjct: 440 IRNKRKSGELYWESVSIS--PVKSPRGEINNF--VGVMEDITQRKRAEEALIRSDEQIRL 495

Query: 207 LHEIKKGHSSVEK 219
           L E          
Sbjct: 496 LLESTAEAIFGID 508



 Score = 42.7 bits (99), Expect = 0.28,   Method: Composition-based stats.
 Identities = 22/271 (8%), Positives = 67/271 (24%), Gaps = 19/271 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGN-YAFKMIGMRLCDVSDI------LHIDPNNHIGDLLK 138
            + ID  G     +    + +G+    +++G  +  +          +         +L+
Sbjct: 504 IFGIDLMGNCTFANPSCARLLGHADPDQLLGKNMHLLMHHTTSEGKPNPVQECAAYQVLR 563

Query: 139 RQ-NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG 197
                       W  +G++    ++  + P    + E  G  G              A  
Sbjct: 564 GGEGVHKDDDVFWRRDGSSFA--VEYWSYPQL-HDGELVG--GVVTFFDISERKRAEAEL 618

Query: 198 KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257
            R  +        K    +    +       +      +++   S T+    +     + 
Sbjct: 619 IRATEAAEAATRAKSEFLANMSHEIRTPMNAALGMLYLLQHTELSETQKSYLEKAQTASG 678

Query: 258 KYPLLTSEESSLPEQEDFHTI------NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
               + ++     + E    +       +                ++  E+++       
Sbjct: 679 VLLGVINDILDFSKVEAGRMVLETTPFRMAAVLSDLQTVAQATLREKPIEFVTRCGADIP 738

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYSHGNLF 342
              F +   L    ++           G + 
Sbjct: 739 EQLFGDPLRLGQVLLNLASNAIKFTEKGKVE 769


>gi|298241171|ref|ZP_06964978.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
            racemifer DSM 44963]
 gi|297554225|gb|EFH88089.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
            racemifer DSM 44963]
          Length = 1110

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 107/771 (13%), Positives = 231/771 (29%), Gaps = 46/771 (5%)

Query: 55   TDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI 114
            TD      +     +S             +  W     G  ++ ++           ++ 
Sbjct: 365  TDIEDRKRAEQGLKESREHLRVLVETLP-QLVWATGPDGLTEDWNQRYADYFQATPEQLR 423

Query: 115  GMRLCDVSDILHIDPNNHIG-DLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNR 173
            G            D    +    L     +           T  Y       +P+     
Sbjct: 424  GYGWRQFLHPEEYDHVCAVRNRSLATGEPYA-IEYRLREGQTGAYRWFLARGMPVRDEAG 482

Query: 174  EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP--- 230
            +    + FG               K   +    L E         +              
Sbjct: 483  QI--LKWFGTCTDIDEQKRAEQQLKSSRESLRVLAETVPQLVWATRPDGGHEYVNQRWCD 540

Query: 231  ----PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKK 286
                       +    L   +    +  + +        +    E    ++         
Sbjct: 541  YTGLTLEQVESDCWVYLQFIHPEDREGNRAQWQQARDMGDMFEHEARLRNSQTGEYRWFL 600

Query: 287  QYFGTLQNNSKESFEYLSHRNHP----SLSAYFDEGENLTPETVDKCPIPFFVYS-HGNL 341
                 +++ + +  ++                  E         +  P   +V    G  
Sbjct: 601  VRSMPVRDETGQILKWFGTCTDIEDQKRTEQQLKESRESLRVLAETVPQLVWVKRPDGQH 660

Query: 342  FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401
             Y N  +   T    ++ I+    +      P   + +        R+  T         
Sbjct: 661  EYTNQRWRDYTGLT-LEQIQSDRWVHLQFIHPDDQEGHR---ASFQRALDTGAMFEYEQR 716

Query: 402  TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
                                N+  + +   G      D +  +  +     +   ++ + 
Sbjct: 717  LRHAQTGEYRWFLTRAMPMRNEAGQIIKWFGTNTNIEDQKRIEEALRQSQERASVLMNSN 776

Query: 462  SDGIAIINREGIILSTNRAVSKLFGYPVEDIL--RKPFTVFLEQNTPSVMNHYLTEILSL 519
              GI + +    I+  N    ++ GY  ED+   R  +         +       E+ + 
Sbjct: 777  IIGIFV-DEGEQIVDANDTFLRMTGYTREDLHAGRLNWMHMTPPEYLAQTRQAHQELAAQ 835

Query: 520  DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-CYSLTMHDISEWKQEKNKLSHAKKIA 578
                  EK  +    +   L + +    L          + D S  K+ + +        
Sbjct: 836  QSLTPYEKEYVCQ--DGSRLPVLVCGDVLQHHPFQRIAFVLDNSAPKELEQR-------- 885

Query: 579  EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
                  K DF++  SHE++TPLTA+   ++ +  +R     +       + ++     + 
Sbjct: 886  ------KDDFISMASHELKTPLTALKMQTQ-LVRKRLERQAHHEAATALSKVEGPVKQLE 938

Query: 639  DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
             +V +LLD+SKI++G++    E V+LD  + E    +Q  +    I++R         ++
Sbjct: 939  RLVGELLDVSKIQAGRLEYIRETVNLDALLHEVADTMQQISTTHTIVVR---GATSCTLV 995

Query: 699  ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
             D   + Q+  N+LSNAI ++P    + +  + +    V +RVRD G+G+   + +K  +
Sbjct: 996  GDKDWLGQVFTNLLSNAIKYSPGTETVEMDLSASPE-TVTIRVRDHGLGIPREQRDKIFE 1054

Query: 759  PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             F ++   +Q    G G+GL +   +V  + G   + S   KG+   + FP
Sbjct: 1055 RFYRVAGPRQRAIPGLGMGLYIVAEIVRGHGGTITVDSEVGKGSTFTVTFP 1105



 Score =  176 bits (446), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 48/511 (9%), Positives = 116/511 (22%), Gaps = 25/511 (4%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144
           F W     G L   +  L   +     +  G                       +    Y
Sbjct: 267 FVWIAGPDGSLTYHNHRLIAYMAMTLERAEGDGWLAGVHPDDRQRVRAAWQTSIQTGVPY 326

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
                     +  Y    +  +P  +       +   G               K   +  
Sbjct: 327 EVELRLQDGTSGAYRWFLVRGVPQRNAQGTILHW--VGTCTDIEDRKRAEQGLKESREHL 384

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHL--RMKNKVSSLTE---YYAHKDDVLKTEKY 259
             L E                               ++         +  + D +   + 
Sbjct: 385 RVLVETLPQLVWATGPDGLTEDWNQRYADYFQATPEQLRGYGWRQFLHPEEYDHVCAVRN 444

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
             L + E    E                    +++ + +  ++             ++  
Sbjct: 445 RSLATGEPYAIEYRLREGQTGAYRWFLARGMPVRDEAGQILKWFGTCTDIDEQKRAEQQL 504

Query: 320 NLTPE----TVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
             + E      +  P   +     G   Y N  +   T    ++ +E    +      P+
Sbjct: 505 KSSRESLRVLAETVPQLVWATRPDGGHEYVNQRWCDYTGLT-LEQVESDCWVYLQFIHPE 563

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
             + N        R         ARL   Q                 ++  + +   G  
Sbjct: 564 DREGNRA-QWQQARDMGDMFEHEARLRNSQT--GEYRWFLVRSMPVRDETGQILKWFGTC 620

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
            +  D +  +++++     L  + E     + +   +G    TN+      G  +E I  
Sbjct: 621 TDIEDQKRTEQQLKESRESLRVLAETVPQLVWVKRPDGQHEYTNQRWRDYTGLTLEQIQS 680

Query: 495 KPFTVF--LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE-EKLLSLRIIIKKLPFS 551
             +     +  +            L        E        +  +          +   
Sbjct: 681 DRWVHLQFIHPDDQEGHRASFQRALDTGA--MFEYEQRLRHAQTGEYRWFLTRAMPMRNE 738

Query: 552 SC----YSLTMHDISEWKQEKNKLSHAKKIA 578
           +     +  T  +I + K+ +  L  +++ A
Sbjct: 739 AGQIIKWFGTNTNIEDQKRIEEALRQSQERA 769



 Score =  132 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 59/513 (11%), Positives = 137/513 (26%), Gaps = 34/513 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147
           +D    +   +      IG    ++ G  L   +  L   P    +    + +       
Sbjct: 32  VDDTETIVYANANAQAIIGTAREEVCGTSLWHCAPHLVSTPLYQAVRKTRQTREP-TEVA 90

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA-LGKRLDKKFSH 206
            + P+        + ++  P           +G  ++   +++  P      R ++ +  
Sbjct: 91  YVSPVTNN----WLHVSLTPT---------DKGLALLFQEQLEPLPLQDALSRNEQLYRE 137

Query: 207 LHEIKKGHSSVEKEKYDIFSQQS---PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
           L E      ++   +  +           HLR +  +                +++    
Sbjct: 138 LLESVADGVTIVTPEGLVLDINQRPLADAHLRREEAIGKPLTDLPAWSSDPAVQQHLRAA 197

Query: 264 SEESSLPEQEDFH---TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
             +++  E   F        +         T   ++ +  EYL             + E+
Sbjct: 198 IAQAAQGETVRFEAHIHPRTDLSLDMLMTITCHRDASQQVEYLICAGRDITER--KQAED 255

Query: 321 LTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
                VD  P   ++    G+L Y N   +          +E A G   L          
Sbjct: 256 ELRPLVDAIPHFVWIAGPDGSLTYHNHRLIAYMAMT----LERAEGDGWLAGVHPDDRQR 311

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
                              RL                   + N     +   G   +  D
Sbjct: 312 VRAAWQTSIQTGVPYEVELRLQDGTS--GAYRWFLVRGVPQRNAQGTILHWVGTCTDIED 369

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
            +  ++ ++     L  ++E     +     +G+    N+  +  F    E +    +  
Sbjct: 370 RKRAEQGLKESREHLRVLVETLPQLVWATGPDGLTEDWNQRYADYFQATPEQLRGYGWRQ 429

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITL-GSTKEEKLLSLRIIIKKLPFSSC--YSL 556
           FL       +       L+      +E     G T   +    R +  +        +  
Sbjct: 430 FLHPEEYDHVCAVRNRSLATGEPYAIEYRLREGQTGAYRWFLARGMPVRDEAGQILKWFG 489

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
           T  DI E K+ + +L  +++     +      +
Sbjct: 490 TCTDIDEQKRAEQQLKSSRESLRVLAETVPQLV 522



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 41/275 (14%), Positives = 85/275 (30%), Gaps = 22/275 (8%)

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIA 363
             N                  ++  P    V      + YAN +   +      +     
Sbjct: 1   MSNAKKTERVTVASRETLLTILETLPGALLVVDDTETIVYANANAQAIIGTAREE----V 56

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
            G S    AP L      + V   R  R      A +  +  N      +          
Sbjct: 57  CGTSLWHCAPHLVSTPLYQAVRKTRQTREPTEV-AYVSPVTNN-----WLHVSLTPTDKG 110

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
                    +  E ++    +  +         +LE+ +DG+ I+  EG++L  N+    
Sbjct: 111 LAL------LFQEQLEPLPLQDALSRNEQLYRELLESVADGVTIVTPEGLVLDINQRPLA 164

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR-QTLEKITLGSTKEEKLLSLR 542
                 E+ + KP T     ++   +  +L   ++   + +T+        + +  L + 
Sbjct: 165 DAHLRREEAIGKPLTDLPAWSSDPAVQQHLRAAIAQAAQGETVRFEAHIHPRTDLSLDML 224

Query: 543 IIIKKLPFSSCYSLTM----HDISEWKQEKNKLSH 573
           + I     +S     +     DI+E KQ +++L  
Sbjct: 225 MTITCHRDASQQVEYLICAGRDITERKQAEDELRP 259



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 16/152 (10%), Positives = 47/152 (30%), Gaps = 7/152 (4%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +  +R        L +ILE     + +++    I+  N     + G   E++        
Sbjct: 5   KKTERVTVASRETLLTILETLPGALLVVDDTETIVYANANAQAIIGTAREEVCGTSLWHC 64

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
                 + +   + +         +  ++  +      L + +           +L   +
Sbjct: 65  APHLVSTPLYQAVRKTRQTREPTEVAYVSPVTN---NWLHVSLTPT----DKGLALLFQE 117

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
             E    ++ LS  +++  +     +D +  V
Sbjct: 118 QLEPLPLQDALSRNEQLYRELLESVADGVTIV 149


>gi|298491734|ref|YP_003721911.1| multi-sensor hybrid histidine kinase ['Nostoc azollae' 0708]
 gi|298233652|gb|ADI64788.1| multi-sensor hybrid histidine kinase ['Nostoc azollae' 0708]
          Length = 1002

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 106/523 (20%), Positives = 202/523 (38%), Gaps = 26/523 (4%)

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365
                     + E       +  P   +    +G + Y N  +   T             
Sbjct: 344 ERQRWQLALQQSEYQLRLMTETIPQQVWTAQPNGLVDYYNQRWCDFTGKTQEQL--KTES 401

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
              ++    L      +         +      R+ +          +        NQ  
Sbjct: 402 WEQIIHPEDLPK--VEELWAKAVQTGSDYEVETRMLSGS---GEYHWILGQARPLRNQQG 456

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
           + +   G   +  D    +  +    +   ++ +     I     +G +   N+      
Sbjct: 457 QIVKWYGTNTDITDHIQAREALRESELNFRTLADTMPQMIWTAKGDGWLEYCNQRWLDYT 516

Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
           G  +E+     +   L  +   +     +E +       +E       ++ +        
Sbjct: 517 GMTLEETQGWGWQPVLHPDDAQICIDIWSESVRTGQNYQIEYRLR-RARDGQYRWHLGRA 575

Query: 546 KKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKI-------AEKESSHKSDFLARVSH 594
             L         +  +  DI + K+ +  L +A +        AE  +  K +FLA +SH
Sbjct: 576 FPLRNQKGQIIKWFGSCTDIDDHKRSEEALRNALQEKQAAYEAAETANRVKDEFLAILSH 635

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           E+RTPL  I+G+S+++   + G L   +  E    I+R+  L +D+++DLLD+S+I  GK
Sbjct: 636 ELRTPLNPILGWSQLL---KTGKLDKDKTDEALKSIERNAKLQVDLIDDLLDVSRILRGK 692

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714
           + L+   V+L + +S A+  + L A+ K+I ++T    NI ++  D   ++QI  N+LSN
Sbjct: 693 LTLNVTTVNLADIISAALETMSLAASVKQIAVQTLIEPNIGKVRGDPARLQQIVWNLLSN 752

Query: 715 AIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           AI FTP GG++++           + V D G G+    L    + F Q   S   +  G 
Sbjct: 753 AIKFTPQGGEVVVQLEQI-GSMAHIIVSDQGKGINRKFLPHIFEHFRQEDGSTTRKFGGL 811

Query: 775 GLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFPLYDTSHP 816
           GLGL + + +V+ + G     S    +GT +++I PL  +S P
Sbjct: 812 GLGLAIVRHLVELHGGTVEADSPGEGQGTTLKVILPLI-SSLP 853



 Score = 83.9 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 28/306 (9%), Positives = 74/306 (24%), Gaps = 17/306 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI-GDLLKRQNTWY 144
            W    +G +   ++      G    ++       +     +     +    ++  + + 
Sbjct: 370 VWTAQPNGLVDYYNQRWCDFTGKTQEQLKTESWEQIIHPEDLPKVEELWAKAVQTGSDYE 429

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            +T +    G+  Y  I   A P+ ++  +    + +G           R   +  +  F
Sbjct: 430 VETRML--SGSGEYHWILGQARPLRNQQGQIV--KWYGTNTDITDHIQAREALRESELNF 485

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPH-----LRMKNKVSSLTEYYAHKDDVLKTEKY 259
             L +         K    +              L            +     +      
Sbjct: 486 RTLADTMPQMIWTAKGDGWLEYCNQRWLDYTGMTLEETQGWGWQPVLHPDDAQICIDIWS 545

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
             + + ++   E       +            L+N   +  ++             +E  
Sbjct: 546 ESVRTGQNYQIEYRLRRARDGQYRWHLGRAFPLRNQKGQIIKWFGSCTDIDDHKRSEEAL 605

Query: 320 NLTPETVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
                  +        Y            FL +  ++    +    G S LL   KL  +
Sbjct: 606 R------NALQEKQAAYEAAETANRVKDEFLAILSHELRTPLNPILGWSQLLKTGKLDKD 659

Query: 379 NAIKPV 384
              + +
Sbjct: 660 KTDEAL 665


>gi|13473203|ref|NP_104770.1| hybrid sensory histidine kinase [Mesorhizobium loti MAFF303099]
 gi|14023951|dbj|BAB50556.1| Hybrid sensory histidine kinase [Mesorhizobium loti MAFF303099]
          Length = 1391

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 131/759 (17%), Positives = 263/759 (34%), Gaps = 57/759 (7%)

Query: 89   IDAHGYLKEISEELPKTIGNYAF-KMIGMRLCDV-SDILHIDPNNHIGDLLKRQNTWYGK 146
            +DA    + I+               IG    ++      IDP        +R  T    
Sbjct: 326  LDADMRAEVINSAFYDFWRIDPGRAGIGSAFRELMEASRAIDPYGADELAWQRHTTEREA 385

Query: 147  TTLWPIEGTNL-----YVPIDLAALPIYSRNR-----EFSGFRGFGIVHVNRVDNDPRAL 196
                 + G+          +  +  P+    R     + +  +G          +  + L
Sbjct: 386  EIRAGVAGSKQLPHNDGRTLVASLAPLPGGKRLISYVDVTDMKG----RETEAQDARKHL 441

Query: 197  GKRLDKKFSHLH--EIKKGHSSVEKEKYDIFSQQSPPPH--------LRMKNKVSSLTEY 246
               L+   + +   +         ++  D      P           L     +      
Sbjct: 442  ASVLESLPAGVIIYDRDDKFVFANRKLQDTLPALKPFWQPGCSFREALEFGQSIGYFRSS 501

Query: 247  YAHKDDVLKTEKYP--LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS--KESFEY 302
                 D L   +    L +           +  +N +    + Y     + +      + 
Sbjct: 502  GDAGIDRLYEVEPEHWLDSMLARYRLPNSSYERLNADGRWYQVYDMRTDDGTFIGVRVDI 561

Query: 303  LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIE 361
               ++  +         +L    +D+ P+  F+ +   ++ + N ++  LT     D I 
Sbjct: 562  TDIKSREAALRDSMRQIDLFRHVMDELPVAAFIKAQDLSIEFVNKAWCALTGIAKEDVIG 621

Query: 362  IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                   L         +     ++                   +      MT       
Sbjct: 622  RTD--RELFGTQDAEGYSHDDTQVVVTGKG----IEVEEPVTHRDGTVRQLMTRKSRLV- 674

Query: 422  NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ---LCSILEATSDGIAIINREGIILSTN 478
                 ++   G   +  D +  ++ +E  + +     S+++     I     +      N
Sbjct: 675  -ATDGSVHLVGSSTDITDVKAREKALEESMRENEVFRSLIDNVPVSIYAKRSDLRQFYVN 733

Query: 479  RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
            +    L G   ED + K       ++  + +   L  + + + +   E        +  +
Sbjct: 734  KGWCDLTGLSREDAIGKTDIEIFGEDGEAFVAGDLAVLRTGETQ---EVEETVRLADGSV 790

Query: 539  LSLRIIIKKLPFSSC---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
                     +  S        +  DI+E K  + +LS A++ A      KS+FLA +SHE
Sbjct: 791  RHQFARKGAMIASDGSLYLIGSTTDITELKMREAELSEARQRAVLADRAKSEFLANMSHE 850

Query: 596  IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
            IRTP+  ++G +E++         +P+   + + I +SGN +L I+ND+LD SKI++G+M
Sbjct: 851  IRTPMNGVLGMAELLAKSNL----DPKQKTFTDIIVKSGNALLTIINDILDFSKIDAGQM 906

Query: 656  NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSN 714
             L   P +L EA+ +  +LV   A EK + +       +  + + D+  ++QI  N+L N
Sbjct: 907  VLDPAPFNLAEAIEDVATLVSTRAKEKDLELIVRVEPRLESLFVGDVGRIRQIVTNLLGN 966

Query: 715  AIHFTPSGGQ-IIISTTHTSNE-EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
            A+ FT  G   + ++         + + V DTG+G+   +L+   + F Q+  S   R E
Sbjct: 967  AVKFTDEGHVLVDVTGERVPTGTRLTISVTDTGIGIPEEKLKLVFEKFSQVDTSSTRRHE 1026

Query: 773  GTGLGLPLAKAMVDANMGKFYIFSTPAKGTL--IEIIFP 809
            GTGLGL +   +V+   G   + S   KG+     +  P
Sbjct: 1027 GTGLGLAITSRLVELMGGTIGVESAEGKGSTFWFTVTLP 1065



 Score =  137 bits (346), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 63/554 (11%), Positives = 135/554 (24%), Gaps = 64/554 (11%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL--LKRQNTW 143
            W  DA      +S       G     ++G    D  +       +    L  L+ +  +
Sbjct: 48  IWETDAELRFSWLSPTYQAATGIDPADVLGRFRFDFLNQDLKGSRSAAAHLEDLQARRPF 107

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFG------------IVHVNRVDN 191
                     G +    +  +  P +    +F+G+RG G            +       +
Sbjct: 108 RDFVYELKAGGADCR-WVLTSGFPRFDNEGKFAGYRGIGRNVTTLAGAFETVEQNPLSGS 166

Query: 192 DPRALGKRLDKKFSHLH------EIKKGHSSVEKEKYDIFSQQSPPPHLRMK-------- 237
           DP      L++    +H      + K     V K   D+ S       +           
Sbjct: 167 DPDRHLADLERTMDAMHMGVVLLDAKLDTLIVNKAYRDLSSIPDGAVTVGAPFSRLMELN 226

Query: 238 -NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS 296
                            L +    +     +            +   T       L    
Sbjct: 227 RRNGIYGDIDEQQWQRYLASRIEEIRAGSVAPREFVHASGRTMMFSVTALSGGKRLLTYY 286

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYK 355
           + +          S +A   E        VD+ PI   V          N +F    +  
Sbjct: 287 EVTELKRRDAEIESANAKIAETFVNLRTMVDEMPIGVLVLDADMRAEVINSAFYDFWRID 346

Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH---TIQWNRENSLA 412
                  +     +  +  +    A +      +        A +     +  N   +L 
Sbjct: 347 PGRAGIGSAFRELMEASRAIDPYGADELAWQRHTTEREAEIRAGVAGSKQLPHNDGRTLV 406

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG 472
            +  P     +    +       +  D +  + + +     L S+LE+   G+ I +R+ 
Sbjct: 407 ASLAPLPGGKRLISYV-------DVTDMKGRETEAQDARKHLASVLESLPAGVIIYDRDD 459

Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI---- 528
             +  NR +      P      +P   F E         Y        + +  E      
Sbjct: 460 KFVFANRKLQDTL--PALKPFWQPGCSFREALEFGQSIGYFRSSGDAGIDRLYEVEPEHW 517

Query: 529 --------------TLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA 574
                               + +   +  +         +     DI++ K  +  L  +
Sbjct: 518 LDSMLARYRLPNSSYERLNADGRWYQVYDM---RTDDGTFIGVRVDITDIKSREAALRDS 574

Query: 575 KKIAEKESSHKSDF 588
            +  +       + 
Sbjct: 575 MRQIDLFRHVMDEL 588



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/442 (8%), Positives = 108/442 (24%), Gaps = 37/442 (8%)

Query: 171 RNREFSGFRGF-GIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS 229
              E  G RG  G        + P    +        L E           +        
Sbjct: 3   EADEAIGARGKRGPDKPVHRGDAPPCADRDSPDALRQLLEAGSDWIWETDAELRFSWLSP 62

Query: 230 ---PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKK 286
                  +   + +      + ++D          L   ++  P ++  + +       +
Sbjct: 63  TYQAATGIDPADVLGRFRFDFLNQDLKGSRSAAAHLEDLQARRPFRDFVYELKAGGADCR 122

Query: 287 QYFGTL-----------------QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
               +                  +N +  +  + +   +P   +  D        T+D  
Sbjct: 123 WVLTSGFPRFDNEGKFAGYRGIGRNVTTLAGAFETVEQNPLSGSDPDRHLADLERTMDAM 182

Query: 330 PIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK---LSDNNAIKPVM 385
            +   +     +    N ++  L+          A     +    +     D +  +   
Sbjct: 183 HMGVVLLDAKLDTLIVNKAYRDLSSIPDGAVTVGAPFSRLMELNRRNGIYGDIDEQQWQR 242

Query: 386 -LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
            L        A S            ++  +        +         ++  D +     
Sbjct: 243 YLASRIEEIRAGSVAPREFVHASGRTMMFSVTALSGGKRLLTYYEVTELKRRDAEIESAN 302

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            K+    + L ++++    G+ +++ +      N A    +               L + 
Sbjct: 303 AKIAETFVNLRTMVDEMPIGVLVLDADMRAEVINSAFYDFWRIDPGRAGIGSAFRELMEA 362

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITL--------GSTKEEKLLSLRIIIKKLPFSSCYSL 556
           + ++  +   E+         E                + + L   +            +
Sbjct: 363 SRAIDPYGADELAWQRHTTEREAEIRAGVAGSKQLPHNDGRTLVASLAPLP---GGKRLI 419

Query: 557 TMHDISEWKQEKNKLSHAKKIA 578
           +  D+++ K  + +   A+K  
Sbjct: 420 SYVDVTDMKGRETEAQDARKHL 441


>gi|315646523|ref|ZP_07899641.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           vortex V453]
 gi|315278166|gb|EFU41486.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           vortex V453]
          Length = 1001

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 130/756 (17%), Positives = 262/756 (34%), Gaps = 63/756 (8%)

Query: 87  WNIDA-HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
           W  D     L   SEE+ +  G     +       ++ ++  D       + K       
Sbjct: 266 WRWDLITHTLTY-SEEMRRIYGYQISTIESNHDSLLAMVIPEDRERVESIVRKALVGTAD 324

Query: 146 KTTLWPI--EGT------NLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG 197
           +        +G          V +     PI             G+              
Sbjct: 325 EVIYRIKLHDGHIRTIRAQWEVSVTNDGRPI----------EMVGMAQDITEQVLIEQQS 374

Query: 198 KRLDKKFSHLHEIKKGHSS---VEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254
              + K+  + E      S   +E   +   S            ++   + +     + +
Sbjct: 375 LDNENKYKLITENSLDFISRSTIECSTFLYCSPSCYSLLGYRPEEMVGTSAFDYVYAEDI 434

Query: 255 KTEKYPLLTSEESSLPEQEDFH--TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
            + +    +     L     F     +      +     +     +  E +S     S  
Sbjct: 435 PSLQEYFSSCLVGKLLTPITFRYIHKDGRHIWFEVNCKYISTQDNQRNEIISIARDISER 494

Query: 313 AYFD----EGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
              +    E E       +  P   + +   G+   AN +   LT Y   + +       
Sbjct: 495 KMMEFKLKENEQRYRSLFEYNPSAVYSMNLDGDYLTANHNLQELTGYTLDELVG------ 548

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
            +   P +++ +  + +  +   +     S  L  I  +       T       +   E 
Sbjct: 549 -MYFGPIVAEKDMARTLYHFNLAKEGRPQSYDLTIIHKDGHPIEINTINIPIFVD--DEV 605

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
           +   GI  +  +      +++    +L  +L   S+GI  ++  G +   N A + +  Y
Sbjct: 606 VGVYGITRDITERIRTMEEIKKLSRELSLLLNTVSEGIIGLDIHGQVAFINPAGAAMLDY 665

Query: 488 PVEDILRKPFTVFLEQNTP-----SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
                + +P    +++           +  L + +      +  +I L    +       
Sbjct: 666 EPLTTIGRPCDQIVKEIRHDGTFYRGEDSPLVQAVRQGTPLSRAEIVLWR-GDGTSFLAD 724

Query: 543 IIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
             +  +          +   DI++    + ++  AK+ AE+    K++FL  +SHE+RTP
Sbjct: 725 YQVNPIWDQGERKGAVMVFRDITD----EKEIIRAKENAERADQAKTEFLTMMSHELRTP 780

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           +  IIG  E++K        +     Y + +  S   +L I+N++LD SKIE+G M L+ 
Sbjct: 781 MNGIIGMIELLKTTEL----DEDQRNYTDILMESSGSLLHILNEILDFSKIETGNMTLNS 836

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHF 718
           EP+ +   +   + L    A EK +L+  S    +P ++  D   ++Q+ +N++SNAI F
Sbjct: 837 EPIDVQALLESIVDLFSAKAKEKGLLLSCSINTTVPDVIIGDGLRLRQVLVNLISNAIKF 896

Query: 719 TPSGGQIIISTTH-----TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
           T  G  I +S        T    +  +V+DTG+G+   +  +    F Q+  S   +  G
Sbjct: 897 TNEGS-ISMSVEGLHRTGTQEFTLAFQVKDTGIGIPAEQQHQLFMSFSQLHPSLNRKYGG 955

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           TGLGL ++K +V+   G   + S    G+      P
Sbjct: 956 TGLGLAISKKLVELMGGVIGVESREQLGSSFYFTIP 991



 Score =  125 bits (314), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 47/509 (9%), Positives = 133/509 (26%), Gaps = 35/509 (6%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151
            G ++ IS      +G    +M G         +  +     G L    +       +  
Sbjct: 155 DGIIEYISPSATDILGYTQEEMTGKHRAAFYHEVDSEQMKEPGKLFS--DDHSFIRRIRH 212

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH--- 208
             G   Y+  + +   I     E S  +   I               +  +         
Sbjct: 213 KNGH--YLWFETSFQLIRGTKGEIS--KVLAIARNITKRKIDEDTLAQAQRIAKIGSWRW 268

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           ++     +  +E   I+  Q         + ++ +      + + +  +       E   
Sbjct: 269 DLITHTLTYSEEMRRIYGYQISTIESNHDSLLAMVIPEDRERVESIVRKALVGTADEVIY 328

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
             +  D H       T +  +     N     E +      +     ++           
Sbjct: 329 RIKLHDGH-----IRTIRAQWEVSVTNDGRPIEMVGMAQDITEQVLIEQQSLDNENKYKL 383

Query: 329 CPIPFFVY------SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
                  +            Y +PS   L  Y+  + +  +            +++    
Sbjct: 384 ITENSLDFISRSTIECSTFLYCSPSCYSLLGYRPEEMVGTSA------FDYVYAEDIPSL 437

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSL-AMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
                      +        I  +  +    +        +     +    I  +  + +
Sbjct: 438 QEYFSSCLVGKLLTPITFRYIHKDGRHIWFEVNCKYISTQDNQRNEI--ISIARDISERK 495

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
           + + K++    +  S+ E     +  +N +G  L+ N  + +L GY +++++   F   +
Sbjct: 496 MMEFKLKENEQRYRSLFEYNPSAVYSMNLDGDYLTANHNLQELTGYTLDELVGMYFGPIV 555

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTM 558
            +   +   ++         +           K+   + +  I   +             
Sbjct: 556 AEKDMARTLYHFNLAKEGRPQS---YDLTIIHKDGHPIEINTINIPIFVDDEVVGVYGIT 612

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSD 587
            DI+E  +   ++    +      +  S+
Sbjct: 613 RDITERIRTMEEIKKLSRELSLLLNTVSE 641



 Score = 93.9 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 49/494 (9%), Positives = 143/494 (28%), Gaps = 24/494 (4%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT-TLWPIE 153
           + ++++   + I +    ++  +  ++  +  +  N  +  L   + +   K       +
Sbjct: 31  VVKVNDRFCELIESERSALLQRKPSEIQVLSDLSINQTLLSLTNDRTSRLKKDSFFIRQD 90

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR--LDKKFSHLHEIK 211
           G+   V +D++ L          G   + +  + +              D+  + + +  
Sbjct: 91  GSRFSVSVDISLL-----EHPSPGEAPWILCCLGQETVQKVTSLPVIKNDELLALIFKSG 145

Query: 212 KGHSSVEKEKYDIFSQQSPPPHL---RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           +   S+  E   I         +     +         + H+ D  + ++   L S++ S
Sbjct: 146 QDLISISSEDGIIEYISPSATDILGYTQEEMTGKHRAAFYHEVDSEQMKEPGKLFSDDHS 205

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
                     N +    +  F  ++    E  + L+   + +     ++           
Sbjct: 206 F--IRRIRHKNGHYLWFETSFQLIRGTKGEISKVLAIARNITKRKIDEDTLAQAQRIAK- 262

Query: 329 CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388
                  +    + +       + +        I     +LL      D   ++ ++   
Sbjct: 263 ----IGSWRWDLITHTLTYSEEMRRIYGYQISTIESNHDSLLAMVIPEDRERVESIVRKA 318

Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
              T       ++ I+ +  +   +              +   G+  +  +  + +++  
Sbjct: 319 LVGTADEV---IYRIKLHDGHIRTIRAQWEVSVTNDGRPIEMVGMAQDITEQVLIEQQSL 375

Query: 449 IEVMQLCSILEATSDGIAIINREG-IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
               +   I E + D I+    E    L  + +   L GY  E+++      ++      
Sbjct: 376 DNENKYKLITENSLDFISRSTIECSTFLYCSPSCYSLLGYRPEEMVGTSAFDYVYAEDIP 435

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWK 565
            +  Y +  L   L   +    +          +         +          DISE K
Sbjct: 436 SLQEYFSSCLVGKLLTPITFRYIHKDGRHIWFEVNCKYISTQDNQRNEIISIARDISERK 495

Query: 566 QEKNKLSHAKKIAE 579
             + KL   ++   
Sbjct: 496 MMEFKLKENEQRYR 509



 Score = 74.7 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 41/325 (12%), Positives = 103/325 (31%), Gaps = 38/325 (11%)

Query: 323 PETVDKCPIP-FFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
            +  +K P+    + +    +   N  F  L + +    ++       +L    ++    
Sbjct: 11  EQMFNKLPLGAILISAVDEQVVKVNDRFCELIESERSALLQRKPSEIQVLSDLSIN---- 66

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
               +L  ++            I+ +         I   +     E         ++   
Sbjct: 67  --QTLLSLTNDRTSRLKKDSFFIRQDGSRFSVSVDISLLEHPSPGEAPWILCCLGQETVQ 124

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           ++    +      L  I ++  D I+I + +GII   + + + + GY  E++  K    F
Sbjct: 125 KVTSLPVIKNDELLALIFKSGQDLISISSEDGIIEYISPSATDILGYTQEEMTGKHRAAF 184

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSL 556
             +     M                  I     K    L      + +  +         
Sbjct: 185 YHEVDSEQMKEP-----GKLFSDDHSFIRRIRHKNGHYLWFETSFQLIRGTKGEISKVLA 239

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
              +I++ K +++ L+ A++IA+  S            ++   +T  + +SE ++     
Sbjct: 240 IARNITKRKIDEDTLAQAQRIAKIGSWRW---------DL---ITHTLTYSEEMRR---- 283

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIV 641
                 Y    + I+ + + +L +V
Sbjct: 284 -----IYGYQISTIESNHDSLLAMV 303



 Score = 46.9 bits (110), Expect = 0.015,   Method: Composition-based stats.
 Identities = 41/408 (10%), Positives = 110/408 (26%), Gaps = 34/408 (8%)

Query: 74  FVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI 133
           F ++P        ++++  G     +  L +  G    +++GM    +     +    + 
Sbjct: 512 FEYNPSA-----VYSMNLDGDYLTANHNLQELTGYTLDELVGMYFGPIVAEKDMARTLYH 566

Query: 134 GDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAA--LPIYSRNREFSGFRGFGIVHVNRVDN 191
            +L K         T+   +G     PI++    +PI+  + E  G   +GI        
Sbjct: 567 FNLAKEGRPQSYDLTIIHKDG----HPIEINTINIPIFVDD-EVVGV--YGITRDITERI 619

Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP-PPHLRMKNKVSSLTEYYAHK 250
                 K+L ++ S L                +          L  +   +         
Sbjct: 620 RTMEEIKKLSRELSLLLNTVSEGIIGLDIHGQVAFINPAGAAMLDYEPLTTIGRPCDQIV 679

Query: 251 DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310
            ++     +            ++            +    +   + + +  +       +
Sbjct: 680 KEIRHDGTFYRGEDSPLVQAVRQGTPLSRAEIVLWRGDGTSFLADYQVNPIWDQGERKGA 739

Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
           +         +  +  D+  I     +      A   FL +  ++    +    G+  LL
Sbjct: 740 V--------MVFRDITDEKEIIRAKENAERADQAKTEFLTMMSHELRTPMNGIIGMIELL 791

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
              +L ++      +L  S  + +     +         ++ +   P        +    
Sbjct: 792 KTTELDEDQRNYTDILMESSGSLLHILNEILDFSKIETGNMTLNSEPI-------DVQAL 844

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
                +    +  ++ + +      SI     D I         +  N
Sbjct: 845 LESIVDLFSAKAKEKGLLLSC----SINTTVPDVIIGDGLRLRQVLVN 888


>gi|261405183|ref|YP_003241424.1| PAS/PAC sensor hybrid histidine kinase [Paenibacillus sp. Y412MC10]
 gi|261281646|gb|ACX63617.1| PAS/PAC sensor hybrid histidine kinase [Paenibacillus sp. Y412MC10]
          Length = 642

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 115/499 (23%), Positives = 226/499 (45%), Gaps = 30/499 (6%)

Query: 319 ENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
           + L        PI    V   G+    NP+   +  Y   + +               S+
Sbjct: 10  QALFEHVYKSAPIGIALVTIEGSWISVNPAACKMFGYTDEELMAQPA------TDYIYSE 63

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
               K  +L   D      +     +  +     A   +   + +Q    +       + 
Sbjct: 64  CINNKDKLLRSLDEASSTIAVEKQLVHKDGNVIWASIHVSLVRDDQDQTPLFFISQIVDI 123

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
            D+++ ++K++  + +  S+ +   D I   N EG I++ N+   +L G+ + +++    
Sbjct: 124 TDSKVAEQKLQESIERYTSLKKYNHDAIISFNLEGRIINGNQMAEQLTGFKIPELIGTKI 183

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL---PFSSCY 554
           +  + +   + +     + ++ +             K+   + +   +  +     +  +
Sbjct: 184 SNLIGERNLARVLSSAADYVAAEKGINCIH-----HKDGHQVEVLATLAPIVIHGKNVGF 238

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
            +   D++E K+    L   K+ AEK +  KS+FLA +SHEIRTP+  +IG +++I    
Sbjct: 239 YIIAKDMTEQKR----LIIEKEAAEKTNKAKSEFLAMMSHEIRTPMNGVIGMTDLILETE 294

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                +    EY   I +SG  +L+I+ND+LD SKIESG+  L  E  SL  A+SE +++
Sbjct: 295 L----DEEQREYVQIIKKSGTTLLNIINDILDFSKIESGRTELVEETFSLRTALSETLNM 350

Query: 675 VQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
           +   A +K I + TS A+++P ++  D+  ++Q+ +N+LSNAI FTP+G  + IS     
Sbjct: 351 ILPKALDKNIEVTTSVASDVPNQVYGDVTKLRQVLMNLLSNAIKFTPNGA-VSISVQCVR 409

Query: 734 NEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
           ++     +   V DTG+G+ + ++ +  +PF Q+ +    + EGTGLGL + K +V    
Sbjct: 410 DQANSKLIQFSVTDTGIGVPSEKIAQLFEPFYQVDHYMTRQVEGTGLGLAICKKLVQLMG 469

Query: 790 GKFYIFSTPA-KGTLIEII 807
           G  +    P  +G++    
Sbjct: 470 GDIWYERNPNQQGSVFTFT 488



 Score = 48.1 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/144 (11%), Positives = 42/144 (29%), Gaps = 4/144 (2%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL-KRQNTWYGKTTLW 150
            G    ++    K  G    +++     D      I+  + +   L +  +T   +  L 
Sbjct: 30  EGSWISVNPAACKMFGYTDEELMAQPATDYIYSECINNKDKLLRSLDEASSTIAVEKQLV 89

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
             +G  ++  I ++   +     +   F    IV             +   ++++ L + 
Sbjct: 90  HKDGNVIWASIHVSL--VRDDQDQTPLFFISQIV-DITDSKVAEQKLQESIERYTSLKKY 146

Query: 211 KKGHSSVEKEKYDIFSQQSPPPHL 234
                     +  I +       L
Sbjct: 147 NHDAIISFNLEGRIINGNQMAEQL 170


>gi|172038471|ref|YP_001804972.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142]
 gi|171699925|gb|ACB52906.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142]
          Length = 1680

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 123/745 (16%), Positives = 271/745 (36%), Gaps = 52/745 (6%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147
            ++  GY+   +E   + +G    +   + L D       +     I +     + +  +T
Sbjct: 962  LNQQGYVVLANESFARMLGRTPEETARLHLRDWEAQFTREEIEQKITNSELCDDIF--ET 1019

Query: 148  TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                 +G+     ++++A P+   +          I            L      + + L
Sbjct: 1020 RHRRKDGSIY--DVEISATPVRWGSE----IVQLCICRDISDRKQAETLLAEEVSRSNAL 1073

Query: 208  HEIKKGHSSVEKEKYDIFSQQSPPP--HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
             E  +    +  ++  +    +           +++SL           +  +  +  + 
Sbjct: 1074 FESSRDGIVILNQQGFVIRGNASFAKMLGYPPEEITSLHVIDWEAQLTEEEVQQKIAQTS 1133

Query: 266  ESSLPEQEDFHTINLNQYTKKQYFGTLQ--NNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
             SS   +      N + Y  +     L     +          +     A     E    
Sbjct: 1134 WSSQTFETRHRRKNGSIYDVEISANPLNWGGETVLLCICRDISDRKEAEAALRHSEARYQ 1193

Query: 324  ETVDKCPIPFF---VYSHG--NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
              V   P   +   +Y +G     Y +P    L + +    I+       ++    LS  
Sbjct: 1194 NLVVTVPGVIYDYVIYPNGSERFVYMSPRCRELLETEPDMLIQDFSVFWRMVHPQDLSLI 1253

Query: 379  NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
               K   L  ++R        L + +      + +T  P    +        +G+  +  
Sbjct: 1254 QQSKESALENNERFLTEIRLVLPSGRI---KWIKITSQPTPNPHADG-GKRWSGMMVDIS 1309

Query: 439  DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
            D +  +  +     +  S  E+   G+ +++  G  L  N+A  ++ GY  E++L K F 
Sbjct: 1310 DRKGAELALRDSEERFRSAFESAGVGMVLVSLNGQFLKVNQAFCEMLGYSEEELLLKNFQ 1369

Query: 499  VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS--LRIIIKKLPFSSC--Y 554
                    ++      +++S    +T +      +    ++   L + + +        +
Sbjct: 1370 EITYPEDLAMSLEGFKQLVS-GQSKTYQTEKRYISASGSIIWGFLTVSVIQDQDERPLYF 1428

Query: 555  SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
               + DI+E +              +    K++F++ VSHE+RTPLT++ G    + N  
Sbjct: 1429 VTQVQDITERR--------------ELDRLKTEFISVVSHELRTPLTSMRGAL-GLLNAG 1473

Query: 615  FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                           + R+ + ++ +VND+LD+ ++ESGK+ L  E   +D  +++A+  
Sbjct: 1474 VLQEEPETVEHMLKIVLRNCDRLIRLVNDILDLERLESGKVRLIKEVCQVDNLLTDAVET 1533

Query: 675  VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
            +   A E  I I     +    + A   ++ Q   N+LSNAI F+  G +I ++    ++
Sbjct: 1534 ISAMATEASITI--ELTSISAYVWASHDAIIQTLTNLLSNAIKFSTEGTKICLTAKLFND 1591

Query: 735  EE--------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
             +        V+  V+D G G+   +L+     F Q+  S   +  GTGLGL + ++++ 
Sbjct: 1592 PDSTAQTPSFVLFSVKDQGRGIPTNKLQTIFGRFQQVDASDARQKGGTGLGLAICQSIIQ 1651

Query: 787  ANMGKFYIFSTPAKGTLIEIIFPLY 811
             + G+ ++ S   +G+      PL+
Sbjct: 1652 QHNGRIWVDSILGEGSTFYFTVPLF 1676



 Score =  165 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 65/608 (10%), Positives = 174/608 (28%), Gaps = 60/608 (9%)

Query: 54  FTDQNQESVSNTNYLDSENTFVFDPIPR--TVRFTWNIDAHGYLKEISEELPKTIGNYAF 111
              Q Q+S+  T      +   F  I R        +    G + E+++   +  G    
Sbjct: 418 TASQLQQSLRRTETALQASQKKFTTIFRMSPDPIVISYWPDGRILEVNDRFIEFSGYSRE 477

Query: 112 KMIGMRLCDVSDILHIDPNNHIGDLLKR-QNTWYGKTTLWPIEGTNLYVPIDLAALPIYS 170
           ++      +++   +     +  +LLKR    +  + TL    G      + L+A     
Sbjct: 478 ELTDHTPLELNVFPNAQQYRNFQELLKRIGFAYSQEITLRLKSGE--VRTVLLSAENHSI 535

Query: 171 RNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS- 229
             +E+        +             K   KK + + +         +   D     + 
Sbjct: 536 EQQEYI----IATIRDVTQSKQLELALKDSRKKLNQILDNTFASIFSFRVFDDQTWTYNY 591

Query: 230 ----------PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTIN 279
                       P   M ++   ++       D +    +    +E + +  +  F   N
Sbjct: 592 QSIGSLILFGYTPQEIMADQGLWMSRVVPEDRDTIILPLFERFATEGT-ITVEYRFRHKN 650

Query: 280 LNQYTKKQYFGTLQNNSKESFEYLS----HRNHPSLSAYFDEGENLTPETVDKCPIPFFV 335
            +       + + +++S +++          +   +    ++ ++L     +      F+
Sbjct: 651 GSIRWISTTYTSYRDSSIDAWNVTGVSIDISDRKQIELALEQQKDLRESIFENSSDAIFL 710

Query: 336 YSHGN--LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393
               +  +   N   + L +  S DD+    G    L     ++      V    +    
Sbjct: 711 VDPQSLLIIDCNRRVVELFEADSKDDLIGIEG--HTLQKQPFTEEEIKAIVAQMEAKGF- 767

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
                 +  I +  +           K       +       +  + +     ++    +
Sbjct: 768 --WEREIEYITFKGQEFWG---NLAAKPIGVGNQILHLVRVTDITERKQAVISLQDSEAR 822

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
             +I++  ++ I+    +G IL  N A  + F     +++   +   + +     +   +
Sbjct: 823 YRAIVQDQTEFISRFLPDGTILFINEAYCRYFDVNASEVIGTTYQPVIFEPDREQVMEQV 882

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKN 569
             +   +    +E   +      ++   + I   L         Y     DI E K+ + 
Sbjct: 883 NSLSKENPITIIENRVIV---NGQIRWTQWINHILFDEQGNFIEYQSVGRDIQELKEAEA 939

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
            L+   +   + ++     L  +                V+  Q +  L N  +      
Sbjct: 940 LLA---EEVSRSNALFESSLDGIV---------------VLNQQGYVVLANESFARMLGR 981

Query: 630 IDRSGNLV 637
                  +
Sbjct: 982 TPEETARL 989



 Score =  124 bits (311), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 44/481 (9%), Positives = 134/481 (27%), Gaps = 30/481 (6%)

Query: 105  TIGNYAFKMI---GMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPI 161
              G    +++   G+ +  V           + +    + T   +       G+  ++  
Sbjct: 599  LFGYTPQEIMADQGLWMSRVVPEDRDTIILPLFERFATEGTITVEYRFRHKNGSIRWIST 658

Query: 162  DLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEK 221
               +     R+     +   G+              ++       + E       +   +
Sbjct: 659  TYTSY----RDSSIDAWNVTGVSIDISDRKQIELALEQQKDLRESIFENSSDAIFLVDPQ 714

Query: 222  YDIF----SQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHT 277
              +      +         K+ +  +  +   K    + E   ++   E+    + +   
Sbjct: 715  SLLIIDCNRRVVELFEADSKDDLIGIEGHTLQKQPFTEEEIKAIVAQMEAKGFWEREIEY 774

Query: 278  I--NLNQYTKKQYFGTLQ--NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF 333
            I     ++        +   N                      + E      V       
Sbjct: 775  ITFKGQEFWGNLAAKPIGVGNQILHLVRVTDITERKQAVISLQDSEARYRAIVQDQTEFI 834

Query: 334  FVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
              +   G + + N ++       + + I            P + + +  + +    S   
Sbjct: 835  SRFLPDGTILFINEAYCRYFDVNASEVIGTTY-------QPVIFEPDREQVMEQVNSLSK 887

Query: 393  CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
                +   + +  N +             ++    +    +  +  + +  +  +  EV 
Sbjct: 888  ENPITIIENRVIVNGQIRWTQWIN-HILFDEQGNFIEYQSVGRDIQELKEAEALLAEEVS 946

Query: 453  QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
            +  ++ E++ DGI ++N++G ++  N + +++ G   E+  R     +            
Sbjct: 947  RSNALFESSLDGIVVLNQQGYVVLANESFARMLGRTPEETARLHLRDW----EAQFTREE 1002

Query: 513  LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS--LTMHDISEWKQEKNK 570
            + + ++          T    K+  +  + I    + + S         DIS+ KQ +  
Sbjct: 1003 IEQKITNSELCDDIFETRHRRKDGSIYDVEISATPVRWGSEIVQLCICRDISDRKQAETL 1062

Query: 571  L 571
            L
Sbjct: 1063 L 1063


>gi|303248431|ref|ZP_07334690.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
 gi|302490142|gb|EFL50061.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
          Length = 1117

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 107/655 (16%), Positives = 226/655 (34%), Gaps = 32/655 (4%)

Query: 185 HVNRVDNDPRALGKR----LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP------PPHL 234
              R                ++++  L E              +    +        P  
Sbjct: 325 RTVRRQTARLEELLEAVGQSERRYRELVENAACLIVRLDLLGRVVFCNAWGQRVFGLPLE 384

Query: 235 RMKNKVSSLTEYYAHKDDVLKTEK--YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL 292
           RM  +           D           L  + + +          N            L
Sbjct: 385 RMLGRDIDALGGAPGSDASESWGAILAVLAEAPDGARTLDRRHIGENGRAIWITWSVIAL 444

Query: 293 QNNSKESFEYL----SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPS 347
           ++      E+L                   E      V       + +       Y +P 
Sbjct: 445 RDPKGLPTEFLCVGNEITQRKQAEKALAASEARYALVVRASNDGIWDWDLRTDAVYFSPR 504

Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
           +L +               +  +      D  A+       +     +     + ++   
Sbjct: 505 YLEILGLAPDALSPTVTEWNQRIHPD---DVEAVLRENRRCATGETDSFVVE-YRMRHAD 560

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
            +   +        ++  + +   G   +    + ++  +     QL  I   +  G+ +
Sbjct: 561 GSYRWIVGRGANSKDEKGQVVRMAGSHTDITRRKRDETALRESQDQLAKIFRLSPVGLCV 620

Query: 468 -INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
              R+  ++  N   +++FGY    ++ +          P      + E+++       E
Sbjct: 621 SAQRDSRVVDINENGARMFGYEKAAVIGRESLHLGVWPHPEDRRALVDELVAKGSIVGKE 680

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
              L       ++    +  +    +C    + DI+E K  +  L  AK+ AE  +  K+
Sbjct: 681 LELLHQNGSTVVVLYSAVPIQAYGETCLLSVLVDITERKAIERSLRRAKEAAEAANRAKT 740

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
           +FL+ +SHEIRTP+  I+G ++ +      P    +  +    I+ +G  +L ++ND+LD
Sbjct: 741 EFLSTMSHEIRTPMNTILGMAQALSAADLPP----KQTQAIRAIEIAGGSLLTLLNDILD 796

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVK 705
           +S+IESG + +  +P  + +     + +++  A  K I +R   A ++P  +      ++
Sbjct: 797 LSQIESGGLIIEEKPCDIGKLAGRIVDMMRPDAAAKDIALRLDLAEDLPPSVSLSPDRIR 856

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSN----EEVILRVRDTGVGMTNYELEKAMKPFG 761
           Q+ +N+L NA+ FT  G  I+++    +     + + L VRDTG+G+   +L      F 
Sbjct: 857 QVLVNLLGNAVKFTHQGS-IVLAVGREAGPTGGDWLRLDVRDTGIGIPVDKLPVIFDRFT 915

Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           Q   +      G GLGL ++K +VD   G   + +   +G+   +  PL     P
Sbjct: 916 QADATTSRLYGGVGLGLAISKKLVDLMGGSIRVETAVGQGSTFTVRLPLRPVHTP 970



 Score =  101 bits (252), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 25/298 (8%), Positives = 78/298 (26%), Gaps = 11/298 (3%)

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLT 352
           N                L     + E    E V+        +   G + + N     + 
Sbjct: 320 NALLRRTVRRQTARLEELLEAVGQSERRYRELVENAACLIVRLDLLGRVVFCNAWGQRVF 379

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
                  +     +  L  AP    + +   ++   ++    A +     I      ++ 
Sbjct: 380 GLPLERMLGR--DIDALGGAPGSDASESWGAILAVLAEAPDGARTLDRRHI-GENGRAIW 436

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG 472
           +T+      +          +  E    +  ++ +     +   ++ A++DGI   +   
Sbjct: 437 ITWSVIALRDPKGLPTEFLCVGNEITQRKQAEKALAASEARYALVVRASNDGIWDWDLRT 496

Query: 473 IILSTNRAVSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530
             +  +    ++ G   + +      +   +  +    +        + +    +     
Sbjct: 497 DAVYFSPRYLEILGLAPDALSPTVTEWNQRIHPDDVEAVLRENRRCATGETDSFV-VEYR 555

Query: 531 GSTKEEKLLSLRIIIKKLPFSSCYSLTM----HDISEWKQEKNKLSHAKKIAEKESSH 584
               +     +              + M     DI+  K+++  L  ++    K    
Sbjct: 556 MRHADGSYRWIVGRGANSKDEKGQVVRMAGSHTDITRRKRDETALRESQDQLAKIFRL 613



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/376 (8%), Positives = 85/376 (22%), Gaps = 27/376 (7%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN---NHIGDLLKRQNTWY 144
            +D  G +   +    +  G    +M+G  +  +      D +     I  +L       
Sbjct: 361 RLDLLGRVVFCNAWGQRVFGLPLERMLGRDIDALGGAPGSDASESWGAILAVLAEAPDGA 420

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
                  I      + I  + + +       + F   G  +               + ++
Sbjct: 421 RTLDRRHIGENGRAIWITWSVIALRDPKGLPTEFLCVG--NEITQRKQAEKALAASEARY 478

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSP-------PPHLRMKNKVSSLTEYYAHKDDVLKTE 257
           + +             + D               P              +    + +  E
Sbjct: 479 ALVVRASNDGIWDWDLRTDAVYFSPRYLEILGLAPDALSPTVTEWNQRIHPDDVEAVLRE 538

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS----HRNHPSLSA 313
                T E  S   +      + +           ++   +                   
Sbjct: 539 NRRCATGETDSFVVEYRMRHADGSYRWIVGRGANSKDEKGQVVRMAGSHTDITRRKRDET 598

Query: 314 YFDEGENLTPETVDKCPIPFFV--YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
              E ++   +     P+   V       +   N +   +  Y+    I    G  +L  
Sbjct: 599 ALRESQDQLAKIFRLSPVGLCVSAQRDSRVVDINENGARMFGYEKAAVI----GRESLHL 654

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
                  +    V    +  + +     L  +  N    + +      +A      +   
Sbjct: 655 GVWPHPEDRRALVDELVAKGSIVGKELEL--LHQNGSTVVVLYSAVPIQAYGETCLLSVL 712

Query: 432 GIEPEDVDTRINKRKM 447
               +  + +  +R +
Sbjct: 713 V---DITERKAIERSL 725



 Score = 65.8 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/267 (11%), Positives = 76/267 (28%), Gaps = 37/267 (13%)

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA--RLHTIQWNRENSLAMTFIP 417
           ++    L+ +L + KL          L R         A   L  I         +    
Sbjct: 239 LDGEFRLAFILYSGKLHTAVRKGNAALLRFVEAGFDGIAAKDLKAIDKK-WRGTPLFPSS 297

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL--------------CSILEATSD 463
             +                     + +R +  +  +L                ++E  + 
Sbjct: 298 GLRYALLAVAALAAAALVLLSINALLRRTVRRQTARLEELLEAVGQSERRYRELVENAAC 357

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF--LEQNTPSVMNHYLTEILSLDL 521
            I  ++  G ++  N    ++FG P+E +L +          +  S     +  +L+   
Sbjct: 358 LIVRLDLLGRVVFCNAWGQRVFGLPLERMLGRDIDALGGAPGSDASESWGAILAVLAEAP 417

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKI 577
                       +  + + +   +  L         +    ++I++ KQ +  L      
Sbjct: 418 DGARTLDRRHIGENGRAIWITWSVIALRDPKGLPTEFLCVGNEITQRKQAEKAL------ 471

Query: 578 AEKESSHKSDFLARVSH------EIRT 598
               S  +   + R S+      ++RT
Sbjct: 472 --AASEARYALVVRASNDGIWDWDLRT 496


>gi|239996811|ref|ZP_04717335.1| PAS signal transduction protein [Alteromonas macleodii ATCC 27126]
          Length = 773

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 115/508 (22%), Positives = 206/508 (40%), Gaps = 22/508 (4%)

Query: 318 GENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
            + L  + +DK  I   +  +G +  AN     L+ +   + I          D   +S+
Sbjct: 3   AQLLQRQAMDKHGIVATMDVNGKILSANDKCSQLSGFSIDEIIGENISA---FDITNMSE 59

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
                 + +  S            ++    E    +           P       I  + 
Sbjct: 60  QEKSD-IFVSLSQGQTWQGEVH--SLTKLGEPWY-VFATLVPVIKSPPRVDHLIAIATDI 115

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
            + +  + ++        SI ++  +G+  +N EG     N A S+L G+ ++++  + F
Sbjct: 116 SEQKRLETRLSEGRAFYRSITDSIGEGVYAVNGEGTTQFLNPAASRLLGWSLDELQGRRF 175

Query: 498 TVFLEQNTPSVMNHYLTE----ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF--- 550
              +             +    +     +         + K  +L  + I+   L     
Sbjct: 176 HDTVHYQKGDGTLLPREQCPVNLTIRSGQSYTSYEDFFTDKRGRLFPISIVAVPLLDKEG 235

Query: 551 -SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
               +    +DIS  K  + KL  A   A+  +  KSDFLA +SHEIRTP+ AIIG + +
Sbjct: 236 KPDGHVGVFNDISGQKAIEQKLQKAYDEAQSANKAKSDFLATMSHEIRTPMNAIIGLTHL 295

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
                     N +  +Y   + RS   +LD++N +LD SK+E+ K+ +  EP +L + + 
Sbjct: 296 ALE----STDNEQRQQYLEKVQRSSTALLDLMNSILDFSKVEADKIEIVDEPFTLTKTID 351

Query: 670 EAISLVQLYANEKRILIRTSF-ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
           +   + Q+ A +K++ +      +   +   D   + Q+ LN+LSNAI FT SG  II++
Sbjct: 352 KLAQVFQVKAQQKQLQLLFDIRCHTNLQCRGDSEKIYQVLLNLLSNAIKFTASG-HIILT 410

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                N ++   V DTG+G++ +   K  K F Q   S      GTGLGL + K +V+  
Sbjct: 411 VEKREN-QLAFSVSDTGMGISEHVKSKLFKAFVQADASISREYGGTGLGLAICKRLVELM 469

Query: 789 MGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
            G   + S   KG+      P+     P
Sbjct: 470 GGDLTLESEVDKGSCFSFALPVCSDEGP 497



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/150 (9%), Positives = 44/150 (29%), Gaps = 11/150 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL------LKR 139
            + ++  G  + ++    + +G    ++ G R  D       D      +       ++ 
Sbjct: 143 VYAVNGEGTTQFLNPAASRLLGWSLDELQGRRFHDTVHYQKGDGTLLPREQCPVNLTIRS 202

Query: 140 QNTW-YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
             ++   +       G     PI + A+P+  +  +  G    G+ +            +
Sbjct: 203 GQSYTSYEDFFTDKRGRLF--PISIVAVPLLDKEGKPDGH--VGVFNDISGQKAIEQKLQ 258

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228
           +   +    ++ K    +    +       
Sbjct: 259 KAYDEAQSANKAKSDFLATMSHEIRTPMNA 288



 Score = 45.8 bits (107), Expect = 0.034,   Method: Composition-based stats.
 Identities = 37/382 (9%), Positives = 95/382 (24%), Gaps = 41/382 (10%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKRQNTWYGKT 147
           +D +G +   +++  +  G    ++IG  +       +     + I   L +  TW G+ 
Sbjct: 20  MDVNGKILSANDKCSQLSGFSIDEIIGENISAFDITNMSEQEKSDIFVSLSQGQTWQGEV 79

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                 G   YV   L  +P+              I                    +  +
Sbjct: 80  HSLTKLGEPWYVFATL--VPVIKSPPRVDHL--IAIATDISEQKRLETRLSEGRAFYRSI 135

Query: 208 HEI----------KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257
            +           +     +      +          R  +      +         +  
Sbjct: 136 TDSIGEGVYAVNGEGTTQFLNPAASRLLGWSLDELQGRRFHDTVHYQKGDGTLLPREQCP 195

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
               + S +S    ++ F       +        L +   +   ++   N  S     ++
Sbjct: 196 VNLTIRSGQSYTSYEDFFTDKRGRLFPISIVAVPLLDKEGKPDGHVGVFNDISGQKAIEQ 255

Query: 318 GENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
                               +     AN +        S +       +  L      S 
Sbjct: 256 KLQKA---------------YDEAQSANKAKSDFLATMSHEIRTPMNAIIGLTHLALEST 300

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
           +N  +   L +  R+  A    +++I               +      E + +     + 
Sbjct: 301 DNEQRQQYLEKVQRSSTALLDLMNSI-----------LDFSKVEADKIEIVDEPFTLTKT 349

Query: 438 VDTRINKRKMEIEVMQLCSILE 459
           +D      +++ +  QL  + +
Sbjct: 350 IDKLAQVFQVKAQQKQLQLLFD 371


>gi|168705337|ref|ZP_02737614.1| multi-sensor hybrid histidine kinase [Gemmata obscuriglobus UQM
           2246]
          Length = 1013

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 117/755 (15%), Positives = 240/755 (31%), Gaps = 63/755 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG----DLLKRQNTW- 143
            D  G +  ++       G    +  G  L  V DI++ D    +       L       
Sbjct: 147 TDPEGRVVFLNATAQALTGWTQPEATGRPLEHVFDIVNADTRQPVANPARRALAEGTVVG 206

Query: 144 -YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
               T L   +GT    PID +A PI +      G     +              ++   
Sbjct: 207 LANHTVLLARDGT--ERPIDDSAAPIRTVAGAIGGA--VLVFRDVTERYAAEEQLRQERA 262

Query: 203 KFSHLHEIKKGHSSVEKEKYDIF-SQQSPPPHLRMKNKVSS-----LTEYYAHKDDVLKT 256
               L +        +        S ++     R  ++  +        +        + 
Sbjct: 263 LLRTLIDALPDAVWTKDAGGRFVVSNRAHDEMARAVHESGAVGKTVFDLHPPELARQYED 322

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
           +   +L   E+   ++E        +         L++ +      +    +       +
Sbjct: 323 DDLRVLRQGETVFNKEERVRHPRGGERWHLTTKAPLRDRAGNVTGLVGVSRNIQARKEAE 382

Query: 317 EGENLTPETVDKC----PIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
           E    +            +   +          N +   L  Y   + +  +      + 
Sbjct: 383 EALRASEAIFRGAFEDTNLAMGIADLEHRFIRVNAALARLLGYTREELLARSVFD---VV 439

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
            P   D +  +   L       I        ++ +      +T +     +         
Sbjct: 440 HPDDRDESRARREWLR---GGAIHFVQEKRYVRRDGRVLWCVTNVSL-VRDADGRPQLYV 495

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
           G   +    +  + ++     +  +  + T+  +   + +   L  N A  ++FGY  ED
Sbjct: 496 GQMQDVTAQKQAESELRASEGRFQAFFDTTTVAMVETSPDAHYLRGNAAFFRMFGYAPED 555

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
           +        L                  ++            K+  +L  ++ +      
Sbjct: 556 LPALTIADVLFPEDREAALAQYARTARGEVPS-YAADRRYRRKDGSVLWGQVSVVAARDE 614

Query: 552 SC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
                  +  + D++E K+ + +   A+K+              V+H+    LT I G+ 
Sbjct: 615 KGTPNLVTAVIVDMTERKKLEEQFQQAQKM-----EAVGRLAGGVAHDFNNLLTIINGYG 669

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
           +++  Q           +    +  +G     +   LL  S+    K  +  + + L+E 
Sbjct: 670 QILLEQLTIGGP---ARDMVQQMTAAGERAAGLTAQLLAFSR----KAIVAPKVIDLNEV 722

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727
           V++A SL++     + I++ T+ AN++ R+ AD   V+Q+ LN+  NA    P GG++ I
Sbjct: 723 VTQAASLLRRLI-GEDIILTTALANDLSRVTADPTQVEQVLLNLAVNAKDAMPRGGRLTI 781

Query: 728 STT-------------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
            T                  + V L V DTGVGMT     +  +PF          G+GT
Sbjct: 782 ETRNVRLNREMPAWPDCPPGDYVQLAVSDTGVGMTEEVKARLFEPFFTTK----EVGKGT 837

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GLGL +    V  + G+  ++S    GT  +I+ P
Sbjct: 838 GLGLAVVHGAVKQSGGRVDVYSELGVGTTFKILLP 872



 Score =  135 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 47/412 (11%), Positives = 117/412 (28%), Gaps = 24/412 (5%)

Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE 245
             R+    +    R +   + L  I  G  + + E   +F   +           ++   
Sbjct: 116 DLRLRAAEQVAHDRAELLRATLASIGDGVITTDPEGRVVFLNATAQALTGWTQPEATGRP 175

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
                D V    + P+      +L E       N      +       ++S      ++ 
Sbjct: 176 LEHVFDIVNADTRQPVANPARRALAEGTVVGLANHTVLLARDGTERPIDDSAAPIRTVAG 235

Query: 306 R------------NHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLT 352
                           +      +   L    +D  P   +     G    +N +   + 
Sbjct: 236 AIGGAVLVFRDVTERYAAEEQLRQERALLRTLIDALPDAVWTKDAGGRFVVSNRAHDEM- 294

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
             ++V +    G     L  P+L+       + + R   T      R   ++  R     
Sbjct: 295 -ARAVHESGAVGKTVFDLHPPELARQYEDDDLRVLRQGETVFNKEER---VRHPRGGERW 350

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG 472
                    ++        G+       +  +  +           E T+  + I + E 
Sbjct: 351 HLTTKAPLRDRAGNVTGLVGVSRNIQARKEAEEALRASEAIFRGAFEDTNLAMGIADLEH 410

Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
             +  N A+++L GY  E++L +     +  +           +    +     +     
Sbjct: 411 RFIRVNAALARLLGYTREELLARSVFDVVHPDDRDESRARREWLRGGAIHFV--QEKRYV 468

Query: 533 TKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEK 580
            ++ ++L     +  +  +      Y   M D++  KQ +++L  ++   + 
Sbjct: 469 RRDGRVLWCVTNVSLVRDADGRPQLYVGQMQDVTAQKQAESELRASEGRFQA 520



 Score =  113 bits (284), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 30/384 (7%), Positives = 97/384 (25%), Gaps = 23/384 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFK-MIGMRLCDVSDILHIDP--NNHIGDLLKRQNT 142
            W  DA G     +    +          +G  + D+          ++ +  L + +  
Sbjct: 275 VWTKDAGGRFVVSNRAHDEMARAVHESGAVGKTVFDLHPPELARQYEDDDLRVLRQGETV 334

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
           +  +  +    G   +        P+  R    +G    G+    +   +     +  + 
Sbjct: 335 FNKEERVRHPRGGERWHLTT--KAPLRDRAGNVTGL--VGVSRNIQARKEAEEALRASEA 390

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPP---HLRMKNKVSSLTEYYAHKDDVLK-TEK 258
            F    E       +   ++      +          +  ++       H DD  +   +
Sbjct: 391 IFRGAFEDTNLAMGIADLEHRFIRVNAALARLLGYTREELLARSVFDVVHPDDRDESRAR 450

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
              L        +++ +   +            +++       Y+      +     +  
Sbjct: 451 REWLRGGAIHFVQEKRYVRRDGRVLWCVTNVSLVRDADGRPQLYVGQMQDVTAQKQAESE 510

Query: 319 EN----LTPETVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
                       D   +     S        N +F  +  Y   +D+        L    
Sbjct: 511 LRASEGRFQAFFDTTTVAMVETSPDAHYLRGNAAFFRMFGYAP-EDLPALTIADVLF--- 566

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
              ++         R+ R  + + A     +    + L          ++         +
Sbjct: 567 --PEDREAALAQYARTARGEVPSYAADRRYRRKDGSVLWGQVSVVAARDEKGTPNLVTAV 624

Query: 434 EPEDVDTRINKRKMEIEVMQLCSI 457
             +  + +  + + + +  ++ ++
Sbjct: 625 IVDMTERKKLEEQFQ-QAQKMEAV 647



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 27/227 (11%), Positives = 65/227 (28%), Gaps = 15/227 (6%)

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENS--------LAMTFIPFEKANQFPENMP 429
           +     +++ R       A   L  ++   E +        LA+  +             
Sbjct: 49  SRTAGGLVVRRLLPLVFVALFTLGAVRLAGERAGYYDTAFGLALMVVSGGTVFAVMVLWT 108

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
                  D+  R  ++        L + L +  DG+   + EG ++  N     L G+  
Sbjct: 109 GWAAHALDLRLRAAEQVAHDRAELLRATLASIGDGVITTDPEGRVVFLNATAQALTGWTQ 168

Query: 490 EDILRKPFTVFLEQ---NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
            +   +P     +    +T   + +     L+      L   T+   ++     +     
Sbjct: 169 PEATGRPLEHVFDIVNADTRQPVANPARRALAEGTVVGLANHTVLLARDGTERPIDDSAA 228

Query: 547 KLP----FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
            +           L   D++E    + +L   + +         D +
Sbjct: 229 PIRTVAGAIGGAVLVFRDVTERYAAEEQLRQERALLRTLIDALPDAV 275


>gi|254504351|ref|ZP_05116502.1| hypothetical protein SADFL11_4390 [Labrenzia alexandrii DFL-11]
 gi|222440422|gb|EEE47101.1| hypothetical protein SADFL11_4390 [Labrenzia alexandrii DFL-11]
          Length = 1190

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 117/649 (18%), Positives = 240/649 (36%), Gaps = 35/649 (5%)

Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTE 245
                    +  + + + + E             D+ S          ++    +S    
Sbjct: 281 ALEAAIIRAETGEAQVNAVLETMLDGVVTLSPSGDLLSANPAALQMFGVQSFEDLSGKRI 340

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPE-----QEDFHTINLNQYTKKQYFGTLQNNSKESF 300
                D+      +   + + + L       +      + + Y  +          ++++
Sbjct: 341 CDIFPDEDAHVLPFACCSGKSAPLETDKNRFEVTGRRFDGSLYPVELSLSKTIVEGQDTY 400

Query: 301 EYL--SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSV 357
             +        + +A   + E    + ++  P  F +Y     L   N  +       S 
Sbjct: 401 TAILRDLTEQKAAAAKLQQVETRLVDAIESLPDGFVLYDAEDRLVLCNSKYKEFY-SSSA 459

Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN--SLAMTF 415
           D I        ++         A +       D        R+   +             
Sbjct: 460 DLIRPGRTFEEII------REGAQRGQYQVTGDALEDWVELRMENHRNPGAPMEQHLDDG 513

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
                           G   +  + +  ++++      L +++ A+ DGI +++  G +L
Sbjct: 514 RWLRVIESRTSEGGMVGFRVDITELKKREQELVSSQGLLRNVVSASFDGIIVMDGSGTVL 573

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY-LTEILSLDLRQTL--EKITLGS 532
             + A  ++FG+   +++ +  + ++       M+   L + L       L       G 
Sbjct: 574 DFSPAAEEVFGWSAVELVGRKMSDYIIPEKYRAMHDAGLEKFLKTGEGPVLGKRIEIEGL 633

Query: 533 TKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
            +E   + + + I+         +   + DI+E K  +  L  AK+ AE  +  K+ FLA
Sbjct: 634 HREGHEIIVELAIRHTRGEKGPLFLGYVRDITERKAAEEALRVAKEKAEAANEAKAQFLA 693

Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650
            +SHEIRTP+  ++G   ++++    P+       Y      SG  +L+++ND+LD SK+
Sbjct: 694 MMSHEIRTPMNGVLGILSLLRDTDLDPV----QKAYVKTARESGRSLLELINDILDFSKL 749

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIAL 709
           E+G+  L   P  L   V     L    A EK + I  ++  ++P+++  D   ++Q+ L
Sbjct: 750 EAGRTELEKAPFRLKTVVKSIADLFMPIAQEKGLTIDLNYPADVPQVVSGDAGRLRQVLL 809

Query: 710 NILSNAIHFTPSGGQIIISTTHTSNEEV----ILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           N++SNA+ FT  G  I IS +   ++ V       V+DTG+G+   + +     F  I  
Sbjct: 810 NLVSNAVKFTEIGS-IDISVSLDEDDPVQPVFRFTVKDTGIGIAKDKHQTLFGDFVTIDT 868

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           S   +  GTGLGL ++K +     G+ ++ S P  G+      PL    
Sbjct: 869 SYTKKQGGTGLGLAISKRLSSLMDGEIHVESLPGAGSTFHFCVPLERAD 917



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 42/413 (10%), Positives = 105/413 (25%), Gaps = 32/413 (7%)

Query: 185 HVNRVDNDPRALGKRL-----DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK 239
              R  +D             ++ F  L + + G+         +        +   ++ 
Sbjct: 147 RDGREIDDFEREALAALAENPEQPFQRLEQREDGNVFRSATAVRMEGSCVACHNTHPESP 206

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTIN-LNQYTKKQYFGTLQNNSKE 298
            +            +      L     +S+        I  L   T      + +  +  
Sbjct: 207 KTDWEIGDLRGIQEVVLPASALYGGSLTSINSLIVMLGIAFLAAATLTFVLSSQRQKALT 266

Query: 299 SFEYLSHRNHPSLSA------YFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLL 351
               L+       +A        + GE      ++         S  G+L  ANP+ L +
Sbjct: 267 RVHDLADAEREKNAALEAAIIRAETGEAQVNAVLETMLDGVVTLSPSGDLLSANPAALQM 326

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS- 410
              +S +D+                 +     +                +  +       
Sbjct: 327 FGVQSFEDLSGKRICDIF-------PDEDAHVLPFACCSGKSAPLETDKNRFEVTGRRFD 379

Query: 411 -LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469
                                  I  +  + +    K++    +L   +E+  DG  + +
Sbjct: 380 GSLYPVELSLSKTIVEGQDTYTAILRDLTEQKAAAAKLQQVETRLVDAIESLPDGFVLYD 439

Query: 470 REGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528
            E  ++  N    + +    + I   + F   + +           + L   +   +E  
Sbjct: 440 AEDRLVLCNSKYKEFYSSSADLIRPGRTFEEIIREGAQRGQYQVTGDALEDWVELRMENH 499

Query: 529 TLGSTK------EEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575
                       + + L +   I+             DI+E K+ + +L  ++
Sbjct: 500 RNPGAPMEQHLDDGRWLRV---IESRTSEGGMVGFRVDITELKKREQELVSSQ 549



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 62/182 (34%), Gaps = 6/182 (3%)

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAI 467
           +  +TF+   +  +    +        + +  +    +  E    Q+ ++LE   DG+  
Sbjct: 250 AATLTFVLSSQRQKALTRVHDLADAEREKNAALEAAIIRAETGEAQVNAVLETMLDGVVT 309

Query: 468 INREGIILSTNRAVSKLFGY-PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
           ++  G +LS N A  ++FG    ED+  K            V+        S  L     
Sbjct: 310 LSPSGDLLSANPAALQMFGVQSFEDLSGKRICDIFPDEDAHVLPFACCSGKSAPLETDKN 369

Query: 527 K-ITLGSTKEEKLLSLRIIIKK--LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
           +    G   +  L  + + + K  +     Y+  + D++E K    KL   +        
Sbjct: 370 RFEVTGRRFDGSLYPVELSLSKTIVEGQDTYTAILRDLTEQKAAAAKLQQVETRLVDAIE 429

Query: 584 HK 585
             
Sbjct: 430 SL 431



 Score = 71.2 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 36/434 (8%), Positives = 111/434 (25%), Gaps = 34/434 (7%)

Query: 34  FETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHG 93
             +++ K     HD  +     +   E+       ++    V   +   +     +   G
Sbjct: 257 LSSQRQKALTRVHDLADAEREKNAALEAA--IIRAETGEAQVNAVLETMLDGVVTLSPSG 314

Query: 94  YLKEISEELPKTIG-NYAFKMIGMRLCDVSDILHIDPNN-----HIGDLLKRQNTWYGKT 147
            L   +    +  G      + G R+CD+                    L+  +    + 
Sbjct: 315 DLLSANPAALQMFGVQSFEDLSGKRICDIFPDEDAHVLPFACCSGKSAPLET-DKNRFEV 373

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
           T    +G+   V + L+   +  ++          I+          A  ++++ +    
Sbjct: 374 TGRRFDGSLYPVELSLSKTIVEGQD------TYTAILRDLTEQKAAAAKLQQVETRLVDA 427

Query: 208 HEIKKGHSSVEKEKYDIF--------SQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
            E       +   +  +            S    +R       +    A +     T   
Sbjct: 428 IESLPDGFVLYDAEDRLVLCNSKYKEFYSSSADLIRPGRTFEEIIREGAQRGQYQVTGDA 487

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
             L        E        + Q+     +  +  +       +  R   +     ++  
Sbjct: 488 --LEDWVELRMENHRNPGAPMEQHLDDGRWLRVIESRTSEGGMVGFRVDITELKKREQEL 545

Query: 320 NLTPETVDKCPIP-----FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
             +   +             +   G +   +P+   +  + +V+ +        ++    
Sbjct: 546 VSSQGLLRNVVSASFDGIIVMDGSGTVLDFSPAAEEVFGWSAVE-LVGRKMSDYIIPEKY 604

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
            + ++A     L   +   +     +  +       +    I   +  + P      G  
Sbjct: 605 RAMHDAGLEKFLKTGEGPVLGKRIEIEGLHREGHEIIVELAIRHTRGEKGP---LFLGYV 661

Query: 435 PEDVDTRINKRKME 448
            +  + +  +  + 
Sbjct: 662 RDITERKAAEEALR 675



 Score = 46.9 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 25/248 (10%), Positives = 63/248 (25%), Gaps = 13/248 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI--LHIDPNNHIGDLLKRQ-NTWYG 145
           +D  G + + S    +  G  A +++G ++ D           +  +   LK       G
Sbjct: 566 MDGSGTVLDFSPAAEEVFGWSAVELVGRKMSDYIIPEKYRAMHDAGLEKFLKTGEGPVLG 625

Query: 146 KTTL---WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
           K         EG    + ++LA                 G V             +   +
Sbjct: 626 KRIEIEGLHREGH--EIIVELAIRHTRGEKGPL----FLGYVRDITERKAAEEALRVAKE 679

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
           K    +E K    ++   +              +++      +    K           L
Sbjct: 680 KAEAANEAKAQFLAMMSHEIRTPMNGVLGILSLLRDTDLDPVQKAYVKTARESGRSLLEL 739

Query: 263 TSEESSLPEQEDFH-TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
            ++     + E     +    +  K    ++ +      +        +  A   +  + 
Sbjct: 740 INDILDFSKLEAGRTELEKAPFRLKTVVKSIADLFMPIAQEKGLTIDLNYPADVPQVVSG 799

Query: 322 TPETVDKC 329
               + + 
Sbjct: 800 DAGRLRQV 807


>gi|254456902|ref|ZP_05070330.1| sensory box sensor histidine kinase/response regulator
           [Campylobacterales bacterium GD 1]
 gi|207085694|gb|EDZ62978.1| sensory box sensor histidine kinase/response regulator
           [Campylobacterales bacterium GD 1]
          Length = 1175

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 123/495 (24%), Positives = 225/495 (45%), Gaps = 20/495 (4%)

Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
           +D+  I     + G + Y N  F  +++++  + I    G +  +       ++  K + 
Sbjct: 294 LDEHAIVSITDAKGKILYINDKFCEISQFQRGELI----GKNHRVIKSNEHPDSLFKEMW 349

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
              S  +      +    +    +   +        +   +      I  +    +  + 
Sbjct: 350 ETISSGSVWHGEIKN---RKKDGSFYWVKSTIVPFVDDSGKPFQYISIRTDTTKQKELEE 406

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           + + +   L SI +  ++G+ +I+  G ++ +N++ S L     +++L   F   +    
Sbjct: 407 RFQDQANFLNSITDNITEGLMVIDDTGNLIYSNKSASTLLEQRDDELLDSNFYSDVLVEN 466

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL--PFSSCYSLTMHDISE 563
            ++       ++            L  TK  K + + +    +         +   DIS+
Sbjct: 467 ENITLSKFDSLMK-KSGVLHSDDVLFKTKNGKNIDIEMSAVSVLRHNKKSLIVVFKDISD 525

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            K  ++ L  AK IAE+ S  KS+FLA +SHE+RTPL  IIG S +  NQ      +PR 
Sbjct: 526 RKILQDSLIEAKLIAEEASKTKSNFLANMSHELRTPLNGIIGMSYIALNQD----TDPRI 581

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
             Y + I  SGN++L I+ND+LD SKIE+GK+++     +LD+ + +    + L A EK 
Sbjct: 582 KNYLDKIHTSGNILLKIINDILDFSKIEAGKLDVESIEFNLDDMLKKLSDFIHLKAYEKD 641

Query: 684 ILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH----TSNEEVI 738
           + +      N P  ++ D   + QI LN+LSN+I FT  G +I IS        ++ +++
Sbjct: 642 LELVIFKDQNTPTSVIGDPLRINQILLNLLSNSIKFTDHG-EIEISVEALILDAADSKLV 700

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
             +RDTGVGMT  EL++    F Q  ++   R  GTGLGL + K +++   G   + S  
Sbjct: 701 FTIRDTGVGMTKEELDRIFNSFSQADSTIARRYGGTGLGLTITKQLIELMDGNISVESEK 760

Query: 799 AKGTLIEIIFPLYDT 813
             GT  ++  PL+ +
Sbjct: 761 GVGTTFKVELPLHTS 775



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/155 (12%), Positives = 53/155 (34%), Gaps = 6/155 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGKT 147
            DA G +  I+++  +       ++IG     +    H D     + + +   + W+G+ 
Sbjct: 303 TDAKGKILYINDKFCEISQFQRGELIGKNHRVIKSNEHPDSLFKEMWETISSGSVWHGEI 362

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                +G+     +    +P    + +   F+   I        +     +      + +
Sbjct: 363 KNRKKDGSFY--WVKSTIVPFVDDSGKP--FQYISIRTDTTKQKELEERFQDQANFLNSI 418

Query: 208 HE-IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS 241
            + I +G   ++     I+S +S    L  ++   
Sbjct: 419 TDNITEGLMVIDDTGNLIYSNKSASTLLEQRDDEL 453


>gi|20091132|ref|NP_617207.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
 gi|19916235|gb|AAM05687.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
          Length = 572

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 123/511 (24%), Positives = 226/511 (44%), Gaps = 17/511 (3%)

Query: 307 NHPSLSAYFDEGENLTPETV-DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365
                     EGE +      +   +   V  +GN+   N     L  Y+  + +     
Sbjct: 56  QRKRTEKAIHEGEEIYRSMFKNAANLILLVEKNGNIVDCNSRVGELLGYRRFELLGQP-- 113

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
           +  L+    L              +    + +     ++ + +  + +        ++  
Sbjct: 114 IRNLIFPDCLEKIKKSSE----EVENRGFSFNKEYRMVRKDGKT-VDVNVNSSGLKDENG 168

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKL 484
            ++    I  +  + +  ++ ++    +  S+ +     + +++ + G IL  N A    
Sbjct: 169 FHVQTIYIVEDITERKKAEKLVKENESRYRSLFQNNRAVMLLLDPDTGNILDANSAACAF 228

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE--KLLSLR 542
           +GYP E +L              ++     E+     R                + +   
Sbjct: 229 YGYPREKMLGLNIADINILPKEQILE----ELEQEKSRDINHFYFTHRLSNGVLRDVERY 284

Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
                +         + DI++ ++ +++L  AK  AE  S  KS+FLA +SHE+RTPL +
Sbjct: 285 SYPILMGGKKLLYAIVSDITDNRKMQSELVRAKMEAEIASKAKSEFLASMSHELRTPLNS 344

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           IIGFS+++  Q FGPL N + + Y N I  SGN +L ++N +LD+SK+E+GKM L  E  
Sbjct: 345 IIGFSDMLLTQNFGPL-NKKQLRYVNNISVSGNHLLKLINGILDLSKVEAGKMELKVEEF 403

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
           S+ +++SE   L+   A++K I I +     +  I AD    KQI  N++ NAI FT   
Sbjct: 404 SVLDSISEVKVLLTPLASKKDIQILSVVDKELTTIRADRTKFKQILYNLVDNAIKFTHED 463

Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
           G +I+       ++  + V+DTG+G++   ++K  +PF Q+ NS+  + +GTGLGL L K
Sbjct: 464 GFVIVDARVE-GDQAKIMVKDTGIGISKAGVKKIFQPFTQLENSEYGKQKGTGLGLSLVK 522

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
             V+ + GK ++ S   +G+      PL  T
Sbjct: 523 KFVEMHTGKIWVESEFGEGSKFIFTIPLSLT 553



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/141 (8%), Positives = 50/141 (35%), Gaps = 5/141 (3%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN-TWYGKTTLW 150
           +G + + +  + + +G   F+++G  + ++     ++      + ++ +  ++  +  + 
Sbjct: 88  NGNIVDCNSRVGELLGYRRFELLGQPIRNLIFPDCLEKIKKSSEEVENRGFSFNKEYRMV 147

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
             +G  + V ++ + L    ++      +   IV           L K  + ++  L + 
Sbjct: 148 RKDGKTVDVNVNSSGL----KDENGFHVQTIYIVEDITERKKAEKLVKENESRYRSLFQN 203

Query: 211 KKGHSSVEKEKYDIFSQQSPP 231
            +    +           +  
Sbjct: 204 NRAVMLLLDPDTGNILDANSA 224


>gi|117926226|ref|YP_866843.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117609982|gb|ABK45437.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1303

 Score =  387 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 112/520 (21%), Positives = 216/520 (41%), Gaps = 19/520 (3%)

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSV 357
             + +L  R +        +        +D+  I     + GN+ Y N  F L++ Y   
Sbjct: 281 VVWSFLRQRRNGLSLEAAIKQLAFQKFAMDQHAIVSIADATGNITYVNEKFCLVSGYAES 340

Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
           + +    G +  + +         + +              +    +        +    
Sbjct: 341 ELL----GNNHRVLSSGHHGATFFQEMWHTIEQGNVWHGELKNRAKE---GGFFWVASTI 393

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
               +   +      I  +    +  + + E + + L  I +A  +G+  ++REG  +  
Sbjct: 394 VPFLDSQGKPYQYISIRTDITQRKRVEEQHEKQKIFLQGITDAMGEGLFAVDREGACIFI 453

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI-TLGSTKEE 536
           N+   ++ G+  E+I  K     +  +T     +    + S+D              +  
Sbjct: 454 NKQAERMLGWSAEEIHLKKMQGLIHASTRIADAYQWPALRSMDEAAPARSEDEHFINRSG 513

Query: 537 KLLSLRIIIKKLPFSSCYS---LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
           ++  + ++   L          +   DIS  KQ++  L  A + A++ +  KSDFLA +S
Sbjct: 514 QMFPVSMVAVPLEEGERIVGSVVVFQDISVRKQQEQVLQGAVRAADQANRAKSDFLANMS 573

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HEIRTP+ AI+G S +          +PR   Y   I  +   +L I+ND+LD +K+E+G
Sbjct: 574 HEIRTPMNAILGMSHLAIRTS----NDPRQRAYLQKIHGAAQSLLHIINDILDFAKVEAG 629

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNIL 712
           KM +   P +LDE +    +L  + A+EK + +      ++P+ ++ D   + QI LN+ 
Sbjct: 630 KMEMEMVPFNLDEVLDTLATLTSVKADEKGLALIFRRHLDLPQRVVGDALRLNQILLNLT 689

Query: 713 SNAIHFTPSGGQII-ISTTHTSNEEV--ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
            NA+ FT  G  ++ +       +++     V+DTG+GM   ++++    F Q  +S   
Sbjct: 690 GNAVKFTEQGSVVVNVEKVQQQGDQIVLRFSVQDTGIGMDESQIQQLFVAFEQADSSITR 749

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           R  G GLGL + K +V+   G+  + STP  G+      P
Sbjct: 750 RYGGRGLGLAICKQLVNLMAGELSVQSTPEVGSCFTFTVP 789



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/251 (11%), Positives = 69/251 (27%), Gaps = 13/251 (5%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD-ILHIDPNNHIGDLLKRQNTWYGKTT 148
           DA G +  ++E+     G    +++G     +S           +   +++ N W+G+  
Sbjct: 319 DATGNITYVNEKFCLVSGYAESELLGNNHRVLSSGHHGATFFQEMWHTIEQGNVWHGELK 378

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               EG   +  +    +P      +   ++   I              ++       + 
Sbjct: 379 NRAKEGG--FFWVASTIVPFLDSQGKP--YQYISIRTDITQRKRVEEQHEKQKIFLQGIT 434

Query: 209 EIK-KGHSSVEKEKYDIFSQQSPPPHLRMKNKVS------SLTEYYAHKDDVLKTEKYPL 261
           +   +G  +V++E   IF  +     L    +         L        D  +      
Sbjct: 435 DAMGEGLFAVDREGACIFINKQAERMLGWSAEEIHLKKMQGLIHASTRIADAYQWPALRS 494

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
           +     +  E E F   +   +        L    +     +      S+    ++    
Sbjct: 495 MDEAAPARSEDEHFINRSGQMFPVSMVAVPL-EEGERIVGSVVVFQDISVRKQQEQVLQG 553

Query: 322 TPETVDKCPIP 332
                D+    
Sbjct: 554 AVRAADQANRA 564



 Score = 41.9 bits (97), Expect = 0.49,   Method: Composition-based stats.
 Identities = 14/145 (9%), Positives = 42/145 (28%), Gaps = 5/145 (3%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR--QNTW 143
            + +D  G    I+++  + +G  A ++   ++  +        + +    L+   +   
Sbjct: 441 LFAVDREGACIFINKQAERMLGWSAEEIHLKKMQGLIHASTRIADAYQWPALRSMDEAAP 500

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                   I  +    P+ + A+P+    R   G     +     V      + +   + 
Sbjct: 501 ARSEDEHFINRSGQMFPVSMVAVPLEEGER-IVG--SVVVFQDISVRKQQEQVLQGAVRA 557

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQ 228
               +  K    +    +       
Sbjct: 558 ADQANRAKSDFLANMSHEIRTPMNA 582


>gi|332702191|ref|ZP_08422279.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332552340|gb|EGJ49384.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 960

 Score =  387 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 105/543 (19%), Positives = 215/543 (39%), Gaps = 23/543 (4%)

Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330
           E+     + + +   ++      N   ++   L             E E L   T ++ P
Sbjct: 294 ERRARAMLQVARNGLEETVARRTNELAQANAAL-----QKEIKEHRESEELFRMTFEQSP 348

Query: 331 -IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389
                V    ++  AN  F  +T Y   + +         +  P+   ++      L R 
Sbjct: 349 FAAVMVSLDYHILRANREFCRITGYSEQE-LGKLTIKD--ITHPEDLPSSIANADALRRG 405

Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449
           D            I+ +   ++ +   P    +     +   G+  +  + +     ++ 
Sbjct: 406 D--FDRYQIDKRYIRKDG-TTIWVRITPQIVRDVGDRPLYSLGMAEDITERKATAEALQA 462

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
           +  +L      + D + I + +G     N       GY + ++  K F  F+  +  +  
Sbjct: 463 KTQELDRYFTLSLDLLCIADTDGYFRRLNPEWENTLGYSLAELEGKRFLDFVHPDDIAAT 522

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN 569
               T + +              + + + +      K  P  +       DI+E K  ++
Sbjct: 523 VEAATSLAAQTQVSKFVNRYRTKSGDYRWIEW----KSYPAGNLVYAAARDITERKDLED 578

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
            L  A   AE  +  K +FLA +SHEIRTP++ I+G  +++ +    P        +   
Sbjct: 579 ALRKAMSQAEAANQAKGEFLANMSHEIRTPMSGIMGLMDMLLDGEATPA----QRRHLEL 634

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I  S   ++ IVND+LD SK+E+G++ +  E  +    + E     +  A +K + +  +
Sbjct: 635 IRGSARTLMSIVNDILDFSKVEAGQLTIDREAFAPRTLIEEVCGRFEYMAEQKELRLTCA 694

Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV-ILRVRDTGVG 747
               +P  +++D R + QI  N++ NA+ FT  G ++ +     + +++  L V D+G G
Sbjct: 695 VDEAVPANLVSDPRRLSQIMTNLVGNALKFTQQG-EVSVRLRADTTDKLLTLSVSDSGSG 753

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           +   +L +  + F Q+ +S   +  GTGLGL + K +V A  G   + S    G++  + 
Sbjct: 754 IPKDKLTRLFQRFSQLDSSPAKKAAGTGLGLAICKGLVQALGGDIRVESELGAGSVFTVR 813

Query: 808 FPL 810
            P+
Sbjct: 814 IPM 816



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/418 (9%), Positives = 95/418 (22%), Gaps = 28/418 (6%)

Query: 178 FRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK 237
             GF + ++  V      L +R           +     +           SP       
Sbjct: 83  ALGFAVANIIEVLTAA-FLLRRFAGLPFRFESQRNIALFLLCAVGLAPLVASPVGAATAT 141

Query: 238 NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297
             +         +  +       ++T    +                 +         S 
Sbjct: 142 LGLGGAFLTNWVRFIMGDALAQLIVTPALLTWIGLVRSERTLAPARAAEFALAMALLASV 201

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSV 357
             F +                           PI  ++             + +    + 
Sbjct: 202 SWFAFDGPSG---------ARLGGVDFLFLPLPILLWIALR----------MDVWGTSTA 242

Query: 358 DDIEIAGGL--STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
             +     +  +T+   P  + + A     L             L  +      + AM  
Sbjct: 243 TALVSIMAIYFATISSGPFNTPDAAQNVFGLQVYVFCVFLPLLFLSALVEEERRARAM-L 301

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
                  +       N +   +   +   ++            E +     +++ +  IL
Sbjct: 302 QVARNGLEETVARRTNELAQANAALQKEIKEHRESEELFRMTFEQSPFAAVMVSLDYHIL 361

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
             NR   ++ GY  +++ +                     +   D  +  +       K+
Sbjct: 362 RANREFCRITGYSEQELGKLTIKDITHPEDLPSSIANADALRRGDFDR-YQIDKRYIRKD 420

Query: 536 EKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
              + +RI  + +               DI+E K     L    +  ++  +   D L
Sbjct: 421 GTTIWVRITPQIVRDVGDRPLYSLGMAEDITERKATAEALQAKTQELDRYFTLSLDLL 478



 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/245 (8%), Positives = 63/245 (25%), Gaps = 14/245 (5%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D  GY + ++ E   T+G    ++ G R  D      I         L  Q         
Sbjct: 482 DTDGYFRRLNPEWENTLGYSLAELEGKRFLDFVHPDDIAATVEAATSLAAQTQVSKFVNR 541

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
           +  +  +    I+  + P        +G   +          D     ++   +    ++
Sbjct: 542 YRTKSGDYR-WIEWKSYP--------AGNLVYAAARDITERKDLEDALRKAMSQAEAANQ 592

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
            K    +    +              + +  ++  +    +           + ++    
Sbjct: 593 AKGEFLANMSHEIRTPMSGIMGLMDMLLDGEATPAQRRHLELIRGSARTLMSIVNDILDF 652

Query: 270 PEQEDF-----HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
            + E             +   ++  G  +  +++    L+     ++ A          +
Sbjct: 653 SKVEAGQLTIDREAFAPRTLIEEVCGRFEYMAEQKELRLTCAVDEAVPANLVSDPRRLSQ 712

Query: 325 TVDKC 329
            +   
Sbjct: 713 IMTNL 717



 Score = 60.0 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 45/449 (10%), Positives = 114/449 (25%), Gaps = 56/449 (12%)

Query: 32  NGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDA 91
           NG E   +++ N    +        +           +SE  F              +  
Sbjct: 306 NGLEETVARRTNELAQANAALQKEIKEHR--------ESEELFRMTFEQSPFAAV-MVSL 356

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK--TTL 149
             ++   + E  +  G    ++  + + D++    +  +    D L+R +    +     
Sbjct: 357 DYHILRANREFCRITGYSEQELGKLTIKDITHPEDLPSSIANADALRRGDFDRYQIDKRY 416

Query: 150 WPIEGTNLYVPID------LAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
              +GT ++V I       +   P+YS           G+              +   ++
Sbjct: 417 IRKDGTTIWVRITPQIVRDVGDRPLYS----------LGMAEDITERKATAEALQAKTQE 466

Query: 204 FSHLHEIKKGHSSVEKEKY---DIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
                 +      +         +  +        +          + H DD+  T +  
Sbjct: 467 LDRYFTLSLDLLCIADTDGYFRRLNPEWENTLGYSLAELEGKRFLDFVHPDDIAATVEAA 526

Query: 261 LLTSEESSLP-EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
              + ++ +      + T + +    +       N         +     +     ++  
Sbjct: 527 TSLAAQTQVSKFVNRYRTKSGDYRWIEWKSYPAGNLV------YAAARDITERKDLEDAL 580

Query: 320 NLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
                  +           G    AN S  + T            GL  +L   + +   
Sbjct: 581 RKAMSQAEAANQA-----KGEFL-ANMSHEIRTPMS------GIMGLMDMLLDGEATPAQ 628

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
                ++  S RT ++    +          L +    F       E   +     E  +
Sbjct: 629 RRHLELIRGSARTLMSIVNDILDFSKVEAGQLTIDREAFAPRTLIEEVCGRFEYMAEQKE 688

Query: 440 TRIN-------KRKMEIEVMQLCSILEAT 461
            R+           +  +  +L  I+   
Sbjct: 689 LRLTCAVDEAVPANLVSDPRRLSQIMTNL 717


>gi|330508806|ref|YP_004385234.1| two-component hybrid sensor and regulator [Methanosaeta concilii
           GP-6]
 gi|328929614|gb|AEB69416.1| two-component hybrid sensor and regulator [Methanosaeta concilii
           GP-6]
          Length = 1026

 Score =  387 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 106/561 (18%), Positives = 220/561 (39%), Gaps = 42/561 (7%)

Query: 277 TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC-PIPF-F 334
            + +     +Q     + N   +           +     E E      +     +   +
Sbjct: 324 GLVMGLMLVRQKIVFDERNQLLTTTLTEIEERKRVEKSLRESEQEKAAILGGLKNVAVEY 383

Query: 335 VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394
           +     L + N +        + + +                 +       + R+     
Sbjct: 384 LDPFMRLIWINDNLQESIGLSADEMLG------ARCYEAVFGRSEPCSGCTVARAINMGA 437

Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
           +    L  I  +               +   + +    +  +    +  +R ++    +L
Sbjct: 438 SQEGDL--ITPDGRT---WISRSSPLKDADGKIIGVVHVLIDISARKSAERALKESERRL 492

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK---PFTVFLEQNTPSVMNH 511
             I+E   D   ++++ G ++S NRA+ K+ G   E IL K    +++         +  
Sbjct: 493 ADIIEFLPDATFVVDKNGKVISWNRAIEKITGVKAELILGKGDYEYSLPFYGERRPTLID 552

Query: 512 Y---------------LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--- 553
                              +   +    L        + +    L      L  S+    
Sbjct: 553 MAKGIDPKIDPEFEKKYENLKRDEENNLLVGEAYMPLQGKGDAYLLGSASALYDSNGDYW 612

Query: 554 -YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
               ++ DI++ K+ + +L  +K++AE  +  KS+FLA +SHEIRTP+ A+IG +E++ +
Sbjct: 613 GAIESIRDITDRKRVEEELQRSKEMAESATRAKSEFLANMSHEIRTPMNAVIGLTELLMD 672

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
           ++   L +    E    I  SG+ +L I+N++LD++KIE+    L   P+ +   +  ++
Sbjct: 673 EKDEKLTSA-QRECVEMIRISGDTLLSIINNILDLTKIEANMTELEHRPIDVKGCIESSM 731

Query: 673 SLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTT- 730
            LV     +KRI        N+P+ I+ D   + QI +N+L+NA+ FT  G +I +S + 
Sbjct: 732 DLVSGSVGDKRIKFSYKIEENVPQFIMGDPTRLCQILINLLNNAVKFTEQG-EIAVSVSN 790

Query: 731 --HTSNE-EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
                   E+   V+DTG+G+   ++ +  + F Q+  S   +  GTGLGL ++K + + 
Sbjct: 791 TNLDDGGYEIHFAVKDTGIGIPEDKMSRLFRSFSQVDASTARKYGGTGLGLAISKKLTEM 850

Query: 788 NMGKFYIFSTPAKGTLIEIIF 808
             G+ ++ S    G++     
Sbjct: 851 MNGRMWVESAVGVGSVFHFTI 871



 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/143 (13%), Positives = 42/143 (29%), Gaps = 9/143 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIG-MRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
           +D    L  I++ L ++IG  A +M+G      V           +   +    +  G  
Sbjct: 384 LDPFMRLIWINDNLQESIGLSADEMLGARCYEAVFGRSEPCSGCTVARAINMGASQEGDL 443

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                   +    I  +  P+   + +  G     I              K  +++ + +
Sbjct: 444 IT-----PDGRTWISRS-SPLKDADGKIIGVVHVLI--DISARKSAERALKESERRLADI 495

Query: 208 HEIKKGHSSVEKEKYDIFSQQSP 230
            E     + V  +   + S    
Sbjct: 496 IEFLPDATFVVDKNGKVISWNRA 518



 Score = 46.6 bits (109), Expect = 0.020,   Method: Composition-based stats.
 Identities = 19/163 (11%), Positives = 44/163 (26%), Gaps = 23/163 (14%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH-----------------ID 128
           T+ +D +G +   +  + K  G  A  ++G    + S   +                 ID
Sbjct: 503 TFVVDKNGKVISWNRAIEKITGVKAELILGKGDYEYSLPFYGERRPTLIDMAKGIDPKID 562

Query: 129 PNNHIGDLLKRQNTWYGKTT---LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVH 185
           P         +++            P++G      +  +A  +Y  N ++ G      + 
Sbjct: 563 PEFEKKYENLKRDEENNLLVGEAYMPLQGKGD-AYLLGSASALYDSNGDYWGA--IESIR 619

Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228
                       +R  +        K    +    +       
Sbjct: 620 DITDRKRVEEELQRSKEMAESATRAKSEFLANMSHEIRTPMNA 662


>gi|186683734|ref|YP_001866930.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186466186|gb|ACC81987.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 1039

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 126/763 (16%), Positives = 259/763 (33%), Gaps = 65/763 (8%)

Query: 92  HGYLKEISEELPKTIGNYAFKMI-GM-RLCDVSDILHIDPNN-HIGDLLKRQNTWYGKTT 148
            G + E ++   + +G     ++ G  R  D+    +I+ NN  I +L  +      +  
Sbjct: 144 DGAIAEANDAFLRMVGYSQEDLLAGRVRWRDMIPPKYIEANNSAIAELKAKGVCQPFENE 203

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +     VPI L +  + + + +   F     V              + ++++    
Sbjct: 204 YIRKD--QNCVPILLGSALLENNSNDIISF-----VLDLSERKQVELALCQSEERYRAFL 256

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLR-MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
           E         + +  I         ++     V               +    ++ +   
Sbjct: 257 EQSSEGIWCIELEVPISPDCPEDEQIQHFYQYVYLAECNNVMAQMYGCSRAEEIINARLG 316

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNS--------------------------KESFE 301
                 D H I   +   +  +  +   S                          +    
Sbjct: 317 DFLIPSDPHNIAYLRNFIRSNYRLIDAESHEIDKQGNSKYFLNNLVGIVENGLLVRAWGT 376

Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDI 360
                      A  ++ E       +  P+   +V       + N  +       + +  
Sbjct: 377 QRDITERKQAEAALNQQEEQLRLITNAVPVQISYVDIQQLYRFNNKGYEDWFGLPASEIY 436

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
                   + +    S   +I P +        +    +L            +      +
Sbjct: 437 GK-----HIREIMGESVYQSILPYVEAVLSGEEVTYETQL---PHKDGTHHYINVSYVPQ 488

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNR 479
            ++  +      +  +    ++ +  ++    +L ++ E        +N   G       
Sbjct: 489 FSEQGKVEGFVALITDITLHKLAEAALKQSEKRLKTLTEKVRIIPWEVNATTGNFTYVGP 548

Query: 480 AVSKLFGYPVEDILRKPFTV-FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
              ++ GYP+ D     F    +          Y  E  S       E        + ++
Sbjct: 549 QTVEILGYPLSDWYIDDFWQKHMHPEDREWAIQYCQE--SSLSLNNYEFEYRMLAADGRV 606

Query: 539 LSLRIIIKKLPFSSC---YSLTMHDISEWKQEKNKLSH-------AKKIAEKESSHKSDF 588
           + L  II  +   +        M DI++ KQ + +          A+  AE  +  K +F
Sbjct: 607 VWLYDIINVVRDENGPQLLHGFMLDITDRKQAEQEREQLLEREKAARADAESANRMKDEF 666

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
           LA +SHE+RTPL AI+G++++++N++F      R       I+R+   +  ++ D+LD+S
Sbjct: 667 LATLSHELRTPLNAILGWTQLLRNRKFDEATTARA---LETIERNTKSLAQLIEDVLDVS 723

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIA 708
           +I  G ++L    + L   V  AI  V+  A  K I I+  F   +  ++ D   ++Q+ 
Sbjct: 724 RIIRGTLHLSIHRIKLVPLVEAAIDTVRPAAEAKEINIKCKFDPEVGIVVGDTNRLQQVV 783

Query: 709 LNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
            N+LSNA+ FT  GG + +      +  V +RV DTGVG+    L    + F Q  +S  
Sbjct: 784 WNLLSNAVKFTSKGGSVDVQLERIES-SVQIRVSDTGVGIAAEFLPHVFERFRQADSSST 842

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFPL 810
               G GLGL + + +V+ + G   + S    +G    +  P+
Sbjct: 843 RSHGGLGLGLAIVRHLVELHGGTVSVESLGVGQGATFIVNLPM 885



 Score =  103 bits (256), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/423 (11%), Positives = 109/423 (25%), Gaps = 43/423 (10%)

Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD 252
                K  + KF  L E       V      I           +      L        D
Sbjct: 116 SLQKLKVSEAKFRRLVESNIIGIIVANMDGAIAEANDA-FLRMVGYSQEDLLAGRVRWRD 174

Query: 253 -------VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE-YLS 304
                           L ++    P + ++   + N          L+NNS +     L 
Sbjct: 175 MIPPKYIEANNSAIAELKAKGVCQPFENEYIRKDQNCVPILLGSALLENNSNDIISFVLD 234

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFF-----------------VYSHGNLFY---A 344
                 +     + E      +++     +                 +       Y    
Sbjct: 235 LSERKQVELALCQSEERYRAFLEQSSEGIWCIELEVPISPDCPEDEQIQHFYQYVYLAEC 294

Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
           N     +      ++I  A     L+ +   +       +             A  H I 
Sbjct: 295 NNVMAQMYGCSRAEEIINARLGDFLIPSDPHNIAYLRNFIRSNYRL-----IDAESHEID 349

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
               +   +         +    +   G + +  + +  +  +  +  QL  I  A    
Sbjct: 350 KQGNSKYFLNN--LVGIVENGLLVRAWGTQRDITERKQAEAALNQQEEQLRLITNAVPVQ 407

Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
           I+ ++ + +    N+     FG P  +I  K     + ++    +  Y+  +LS +    
Sbjct: 408 ISYVDIQQLYRFNNKGYEDWFGLPASEIYGKHIREIMGESVYQSILPYVEAVLSGEE--- 464

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEK 580
           +   T    K+     + +              +   + DI+  K  +  L  ++K  + 
Sbjct: 465 VTYETQLPHKDGTHHYINVSYVPQFSEQGKVEGFVALITDITLHKLAEAALKQSEKRLKT 524

Query: 581 ESS 583
            + 
Sbjct: 525 LTE 527



 Score = 73.5 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 59/146 (40%), Gaps = 5/146 (3%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV--FLE 502
           +K+++   +   ++E+   GI + N +G I   N A  ++ GY  ED+L         + 
Sbjct: 118 QKLKVSEAKFRRLVESNIIGIIVANMDGAIAEANDAFLRMVGYSQEDLLAGRVRWRDMIP 177

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI-IIKKLPFSSCYSLTMHDI 561
                  N  + E+ +  + Q  E   +   K++  + + +        S+     + D+
Sbjct: 178 PKYIEANNSAIAELKAKGVCQPFENEYI--RKDQNCVPILLGSALLENNSNDIISFVLDL 235

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSD 587
           SE KQ +  L  +++         S+
Sbjct: 236 SERKQVELALCQSEERYRAFLEQSSE 261


>gi|282895633|ref|ZP_06303758.1| Multi-component Transcriptional regulator, Winged helix family
            [Raphidiopsis brookii D9]
 gi|281199327|gb|EFA74192.1| Multi-component Transcriptional regulator, Winged helix family
            [Raphidiopsis brookii D9]
          Length = 1329

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 109/533 (20%), Positives = 210/533 (39%), Gaps = 62/533 (11%)

Query: 322  TPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
                V+  P    + S  +L + N + + L    S  ++     +      P+  +    
Sbjct: 530  YHNLVEVYPEAILIVSQDDLVFVNSAAVRLLGVNSAGELLGKKFIE--FVHPQHREEIEE 587

Query: 382  --------------KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
                          + V   ++D   I        + +  + +  +      +  Q    
Sbjct: 588  NLKSLKTNQRLIPLQEVKFLQADGRIIYVETVGAFLTYQNQPAAQIVARDITRRKQTELA 647

Query: 428  MPQNGIEPEDV--------------------DTRINKRKMEIEVMQLCSILEATSDGIAI 467
            + +   E E                      + +  +  + I   +  +IL    D I  
Sbjct: 648  LRKTKDELELRVNQRTSELINVNHQLQSQLDEQKRTQDALRISENRFEAILSIADDAIIS 707

Query: 468  INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI---LSLDLRQT 524
            I+    I   N+   K+FGY  E++L K   + L         ++++      +   R  
Sbjct: 708  IDNSQGITLFNQGAEKIFGYTAEEVLGKKLDLLLPTRFAQEHRNHVSTFGKSSAHARRMG 767

Query: 525  LEKITLGSTKEEKLLSLRIIIKKLP--FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES 582
              +   G  K+         I KL     S Y++ + DI+E KQ +              
Sbjct: 768  ERQEIFGCRKDGSEFPAEASISKLDLGPESVYTVILRDITERKQVE-------------- 813

Query: 583  SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
              K +F++ VSHE+RTPLT+I G   ++ +       + +          S   ++ ++N
Sbjct: 814  KMKDEFVSVVSHELRTPLTSIHGSLGMLTSGLLST-TSEQGKRLLQIATDSTERLVRLIN 872

Query: 643  DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI----- 697
            D+LDI +IESGK+ +  E   L + ++ AI+++Q  A++  + +    +N+         
Sbjct: 873  DILDIERIESGKVKMERENCDLRDLINSAINIMQALADKAGVSLSIQNSNSSSNSSSIQL 932

Query: 698  LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757
             AD   + Q   N+ SNAI F+  G  + + T    + +V++ V+DTG G+   +LE   
Sbjct: 933  WADPDRIIQTLTNLFSNAIKFSEPGSTVYLMTELQKD-QVLVTVQDTGRGIPEDKLESIF 991

Query: 758  KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            + F Q+ +S     +GTGLGL + K++V  + GK ++ S   +G+      P+
Sbjct: 992  ERFQQVDSSDSRNHDGTGLGLAICKSIVQQHGGKIWVKSVLGQGSSFYFTLPI 1044


>gi|298489942|ref|YP_003720119.1| multi-sensor signal transduction histidine kinase ['Nostoc azollae'
            0708]
 gi|298231860|gb|ADI62996.1| multi-sensor signal transduction histidine kinase ['Nostoc azollae'
            0708]
          Length = 1138

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 122/772 (15%), Positives = 262/772 (33%), Gaps = 37/772 (4%)

Query: 55   TDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI 114
            TD +    +     +SE  F            + +D  G +   +       G  A ++I
Sbjct: 383  TDIHDRVTAEIALRESEEYFRLLVEGVKDYAIYMLDPEGRVMSWNSGAECMTGYQAAEII 442

Query: 115  GMRLCDVSDILHIDPNNHIGDLLKRQNTWY--GKTTLWPIEGTNLYVPIDLAALPIYSRN 172
            G           I        L           ++     +G+  +    L AL  +   
Sbjct: 443  GRDFACFFPPEDIANAMPKQQLEAASVNSRCESESIFVRKDGSYFWANCILTAL--HDDT 500

Query: 173  REFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP 232
             E  GF       + R   + +   K L +    +     G S        I+   +   
Sbjct: 501  GELRGF-----CKLTRDITERKLTEKSLLRLQKAIESTSDGISIANISGQVIYVNPAFTE 555

Query: 233  HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS-EESSLPEQEDFHTINLNQYTKKQYFGT 291
             L       +            K  +  L T     S   +      + +          
Sbjct: 556  VLDYTGIQLNTCGGLVTTFRNPKVFETVLATVHRGESWHGEVTMQAQSGDYVQVDLRTDA 615

Query: 292  LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS----HGNLFYANPS 347
            +++ + +    +S     +   + +EG  L    +        +       G++ Y NP+
Sbjct: 616  IKDTTGKIVYLVSIYTDITQRRFIEEGLRLRDRAIAASSNGIIIADITIPDGSITYVNPA 675

Query: 348  FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
            F  +T Y + + +        L     ++   A++ + +             L   + + 
Sbjct: 676  FERMTGYTAAEVMRQNF---RLFLGADINQP-ALEQMKIAMQTGQ--DCKVILRNYRKDG 729

Query: 408  ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
                          +         GI+ +    +  +  + +   +L  +L A+   +  
Sbjct: 730  SLFWH-ELNISPVYDTEACLTHYIGIQTDITQRKQAETALLVTQQRLQYLLSASP-AVIY 787

Query: 468  INREGII---LSTNRAVSKLFGYPVEDILRKP--FTVFLEQNTPSVMNHYLTEILSLDLR 522
             +        +  +  +  + GY  ++ ++    +   +     S +   L+++   D +
Sbjct: 788  TSEAMRDYGTVFISNNIKGMVGYEAQEFVKDSGFWFSHIHPEDASDVLAELSQVQVFDKK 847

Query: 523  QTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIA 578
            Q           +     +    K +   +           DI+  KQ + +L  A +  
Sbjct: 848  Q-YSLEYRFLHADGTYRWIYDQGKVVWDKAGNPLELVGYWADITSRKQLEQELRTALEKE 906

Query: 579  EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
            ++ +  KS F++  SHE RTPL+ I+  +E +           + + +   I  + + + 
Sbjct: 907  KELNELKSRFISMTSHEFRTPLSTILSSAE-LLEHYHQRWTEEKLLIHLRRIQTAVHRMT 965

Query: 639  DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
            ++++D+L I K E+GK+        L E   + +  V+L    + ++  TS   +I    
Sbjct: 966  EMLDDILVIGKAEAGKLEYKPLFFDLVEYCRQLVEEVRLNLKSQHLIFFTSQCKSI-SCY 1024

Query: 699  ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
             D + +  I  N+LSNA+ ++P G  +  +     NE+ +L+++D G+G+      +  +
Sbjct: 1025 MDDKLLGYILSNLLSNALKYSPDGSLVRFTLACK-NEQAVLKIQDQGIGIPEENQPRLFE 1083

Query: 759  PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             F +  N       GTGLGL + K  VD + G+ Y  S    GT   +  P+
Sbjct: 1084 SFYRANNVGN--ILGTGLGLAIVKKCVDIHNGEIYFTSQLGIGTQFTVKLPV 1133



 Score =  190 bits (482), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 73/546 (13%), Positives = 165/546 (30%), Gaps = 34/546 (6%)

Query: 55  TDQNQESVSNTNYL--DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFK 112
           T Q+      T      SE  F F       +  W  DA G L  +++ +    G+   +
Sbjct: 254 TVQDVTQRKETQEALEKSEEWFRFLAESIPQQ-VWIADADGNLVYMNQRVLDGFGSTRER 312

Query: 113 MIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172
           ++G +         +    ++ +        Y        + +  Y      AL +  R 
Sbjct: 313 VLGGKWTQWVHPDDLPNVVNVWNQSLATGINYEVEFRLFQKPSGTYHWHMGRALALRDRQ 372

Query: 173 REFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSS-VEKEKYDIFSQQSPP 231
            +      FG               +  ++ F  L E  K ++  +   +  + S  S  
Sbjct: 373 GKIV--NWFGTNTDIHDRVTAEIALRESEEYFRLLVEGVKDYAIYMLDPEGRVMSWNSGA 430

Query: 232 ---PHLRMKNKVSSLTEYYAHKDDVLKTEK--YPLLTSEESSLPEQEDFHTINLNQYTKK 286
                 +    +      +   +D+            S  S    +  F   + + +   
Sbjct: 431 ECMTGYQAAEIIGRDFACFFPPEDIANAMPKQQLEAASVNSRCESESIFVRKDGSYFWAN 490

Query: 287 QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYAN 345
                L +++ E   +       +     ++      + ++       + +  G + Y N
Sbjct: 491 CILTALHDDTGELRGFCKLTRDITERKLTEKSLLRLQKAIESTSDGISIANISGQVIYVN 550

Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405
           P+F  +  Y  +  +   GGL T    PK+ +                      +     
Sbjct: 551 PAFTEVLDYTGIQ-LNTCGGLVTTFRNPKVFETVLATVHR-----GESWHGEVTMQAQSG 604

Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465
           +    + +        +   + +    I  +    R  +  + +        + A+S+GI
Sbjct: 605 D---YVQVDLRTDAIKDTTGKIVYLVSIYTDITQRRFIEEGLRLRDR----AIAASSNGI 657

Query: 466 AIIN---REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522
            I +    +G I   N A  ++ GY   +++R+ F +FL  +        +   +     
Sbjct: 658 IIADITIPDGSITYVNPAFERMTGYTAAEVMRQNFRLFLGADINQPALEQMKIAMQTGQD 717

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIA 578
             +  I     K+  L    + I  +  +      Y     DI++ KQ +  L   ++  
Sbjct: 718 CKV--ILRNYRKDGSLFWHELNISPVYDTEACLTHYIGIQTDITQRKQAETALLVTQQRL 775

Query: 579 EKESSH 584
           +   S 
Sbjct: 776 QYLLSA 781



 Score =  148 bits (373), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 49/513 (9%), Positives = 144/513 (28%), Gaps = 35/513 (6%)

Query: 87  WNIDAHGYLKEISEELPKTIGNY-AFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
           W  D H      +    K +G      ++G    D   ++  +        L   N    
Sbjct: 162 WK-DIHSVFLGCNRNFAKMVGFENPEDIVGKT--DFDLVVDPEQAEFYDATLMEANQPEY 218

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
              +   +     + ++   +P++S   +  G  G   V       + +   ++ ++ F 
Sbjct: 219 YQIIPKQQADGSQIWLETNKVPLHSIGGQVVGMLG--TVQDVTQRKETQEALEKSEEWFR 276

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSP--PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
            L E       +     ++              + +V           D L         
Sbjct: 277 FLAESIPQQVWIADADGNLVYMNQRVLDGFGSTRERVLGGKWTQWVHPDDLPNVVNVWNQ 336

Query: 264 SEESSLPEQEDFH---TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
           S  + +  + +F      +   +        L++   +   +             +    
Sbjct: 337 SLATGINYEVEFRLFQKPSGTYHWHMGRALALRDRQGKIVNWFGTNTDIHDRVTAEIALR 396

Query: 321 LTPETVDKCPIPF------FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
            + E                +   G +   N     +T Y++ + I      +       
Sbjct: 397 ESEEYFRLLVEGVKDYAIYMLDPEGRVMSWNSGAECMTGYQAAEIIGR--DFACFFPPED 454

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
           +++    + +     +  C    +    ++ +  +      I     +   E      + 
Sbjct: 455 IANAMPKQQLEAASVNSRC---ESESIFVRKDG-SYFWANCILTALHDDTGELRGFCKLT 510

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
            +  + ++ ++ +     +L   +E+TSDGI+I N  G ++  N A +++  Y    +  
Sbjct: 511 RDITERKLTEKSLL----RLQKAIESTSDGISIANISGQVIYVNPAFTEVLDYTGIQLN- 565

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC- 553
                 +       +   +   +     ++         +    + + +    +  ++  
Sbjct: 566 -TCGGLVTTFRNPKVFETVLATVHRG--ESWHGEVTMQAQSGDYVQVDLRTDAIKDTTGK 622

Query: 554 ---YSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
                    DI++ +  +  L    +     S+
Sbjct: 623 IVYLVSIYTDITQRRFIEEGLRLRDRAIAASSN 655



 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 32/319 (10%), Positives = 93/319 (29%), Gaps = 13/319 (4%)

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
            + ++  P    F                +          L+      +     + + + 
Sbjct: 90  AAGDALKPIVSLFSQTQTQLIAVIDEQDQMVGVITPESICLALGVVEMVENQLLQSQQML 149

Query: 323 PETVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
              +D  P   F     ++    N +F  +  +++ +DI        ++D     +    
Sbjct: 150 QLIMDTIPHGIFWKDIHSVFLGCNRNFAKMVGFENPEDIVGKTDFDLVVD----PEQAEF 205

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
               L  +++       ++   Q    + + +        +   + +   G   +    +
Sbjct: 206 YDATLMEANQPEY---YQIIPKQQADGSQIWLETNKVPLHSIGGQVVGMLGTVQDVTQRK 262

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
             +  +E        + E+    + I + +G ++  N+ V   FG   E +L   +T ++
Sbjct: 263 ETQEALEKSEEWFRFLAESIPQQVWIADADGNLVYMNQRVLDGFGSTRERVLGGKWTQWV 322

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLT 557
             +    + +   + L+  +   +E                     L         +  T
Sbjct: 323 HPDDLPNVVNVWNQSLATGINYEVEFRLF-QKPSGTYHWHMGRALALRDRQGKIVNWFGT 381

Query: 558 MHDISEWKQEKNKLSHAKK 576
             DI +    +  L  +++
Sbjct: 382 NTDIHDRVTAEIALRESEE 400



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 49/139 (35%), Gaps = 16/139 (11%)

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYP-VEDILRKPFTVFLEQNTPSVMNHYLTE 515
           I++    GI   +   + L  NR  +K+ G+   EDI+ K     +     +        
Sbjct: 152 IMDTIPHGIFWKDIHSVFLGCNRNFAKMVGFENPEDIVGKTDFDLVVDPEQAEFYDA--T 209

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKL 571
           ++  +  +  + I      +   + L      L       +    T+ D+++ K+ +  L
Sbjct: 210 LMEANQPEYYQ-IIPKQQADGSQIWLETNKVPLHSIGGQVVGMLGTVQDVTQRKETQEAL 268

Query: 572 SHAKKIAEKESSHKSDFLA 590
                   ++S     FLA
Sbjct: 269 --------EKSEEWFRFLA 279


>gi|307151274|ref|YP_003886658.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306981502|gb|ADN13383.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 1811

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 122/721 (16%), Positives = 243/721 (33%), Gaps = 39/721 (5%)

Query: 117  RLCDVSDILHI-DPNNHIGDLLKRQNTWYGKTTLWPI---EGTNLYVPIDLAALPIYSRN 172
                +   LH  D       +             + +   +GT  Y  +       Y+ +
Sbjct: 967  TWTQIQSYLHPEDQELARLAVENSIREHSDYDIEYRLMLSDGT--YRWVAAKGRAQYNAS 1024

Query: 173  REFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP 232
                G   FG+V             ++ + +     +        +  +       +P  
Sbjct: 1025 GNVLGM--FGVVQDISERKQAEETLRQTEARLYVALKNSPITVFNQDRELRYTWIYNPAF 1082

Query: 233  HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL 292
            +  +   +           DV +  +      +      +E    +    Y        L
Sbjct: 1083 NYPLDYIIGKRENELFAHSDVTQLIEIKQGVLDTGIAAREEVKIGMPDGDYYYDLTVEPL 1142

Query: 293  QNNSKESF----EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPS 347
             +   +        +       +     + E +    +   P+            YAN +
Sbjct: 1143 YDKGSKIMGITCAAIDISERKQMELAIRKSETVLNAFLTSSPVAVAFLDQDLRYIYANEA 1202

Query: 348  FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
               +      + I         +     SD   +   +L          +  +       
Sbjct: 1203 LAAINGVPLKEHIGRTVWE---VLPAWASDIQVVVEQVLATKQPLL---NQEVSGETNPP 1256

Query: 408  ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
                      +       E +       +  + +  ++ +     +  S++ A+S  +  
Sbjct: 1257 GLYRYGLVNYYPVYLPDGEVLGVGITSMDISELKRTEQALRESEERYRSLVTASSQIVWR 1316

Query: 468  INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
             N +G  +   +   +  G PVE++L    T  +       +     + +      T E 
Sbjct: 1317 ANHQGQFVDV-QGWEEFTGQPVEELLAGS-TAAIHPQDLERVRQIWYKAVKSKT--TYEV 1372

Query: 528  ITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSH-------AKK 576
                   +       I    +  +      +     +I + KQ + +          A++
Sbjct: 1373 EHRIRKYDGTYEYFAIRGIPVLDAGGEVYTWVGMTTNIHQRKQAEMEREQLLEAERRARE 1432

Query: 577  IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
             AE+ +  K +FLA +SHE+R+PL  I+G++++++  +          +    I+R+  L
Sbjct: 1433 EAERANRIKDEFLAVLSHELRSPLNPILGWTQMLQTYKLDEKAT---QQALATIERNAKL 1489

Query: 637  VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696
               ++ DLLDIS+I  GKM L+  PV+L   +  A+  V+L A  K I I+T FA  +  
Sbjct: 1490 QTQLIEDLLDISRILRGKMVLNIAPVNLVSVIQSALETVRLAAEAKNIKIQTRFAAGVGE 1549

Query: 697  ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKA 756
            +L D   ++Q+  N+LSNA+ FTP+GGQI I           + V+DTG G+    L   
Sbjct: 1550 VLGDSARLQQVVWNLLSNAVKFTPAGGQIEIDLELKDIN-AQISVKDTGKGINPNFLPHV 1608

Query: 757  MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFPLYDTSH 815
             + F Q  +    +  G GLGL + + + + + G   + S     G    +  PL  T  
Sbjct: 1609 FEYFRQEDSKTTRKYGGLGLGLAIVRHLTELHGGTVAVDSPGEGLGATFTVSLPLTATPS 1668

Query: 816  P 816
            P
Sbjct: 1669 P 1669



 Score =  125 bits (314), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 51/519 (9%), Positives = 125/519 (24%), Gaps = 33/519 (6%)

Query: 90   DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTWYGKTT 148
            D  G    ++    +       ++IG+R  ++   +           +L          T
Sbjct: 549  DETGQHIYVNAWFEQL--FAGKEIIGLRDFEIYPQVAAQQFRANDLKVLDSNEVMQFLET 606

Query: 149  LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
            L   +G + YV       P    +         G+              +  D++F    
Sbjct: 607  LPQEDGEHYYVSFKF---PFQDSSGRKLVA---GVSMDVSDRIRAEEALRLSDERFRLAA 660

Query: 209  EIKKGHSSVEKEKYDIFSQQSPP-------PHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
               KG             +           P    + +       +      +  E   L
Sbjct: 661  RAVKGIVYDWDVLSGTVYRSEGLYPLMGIHPDDVPQTRDWWSERLHPDDLARIMPEMGFL 720

Query: 262  LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG--- 318
            +         +      +            L++ +      +   +  +     +     
Sbjct: 721  IEGRGELYEFEYRVRHEDGRWIEVWDQGYLLRDQNGGLLRVVGFTSDITERKQAEAEKQQ 780

Query: 319  --------ENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
                           + + P    V +   G++   N     + +  S+   E       
Sbjct: 781  LLEQIKTEREFLEAVLQQMPAGVMVANAATGDIMLTNEQIKYIWRISSLLPFENIHQSER 840

Query: 369  LLDA-PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
            L            +    L+RS +T                    M        +     
Sbjct: 841  LYHGFHLSGRPYQLHEWPLFRSVKTGEVVREEEIIFLRGDGTWGIMLVNSAPIRDTQGNI 900

Query: 428  MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
                    +  D +  +  ++    +L   L A   G    N +  +++ +   +++F  
Sbjct: 901  KAGVVTFYDISDRKQAEEALQESAQRLSLALSAAKMGDWSWNAKTDMVTFSERGAQIFDI 960

Query: 488  P-VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
            P    +       +L      +    +   +       +E   + S    + ++ +   +
Sbjct: 961  PSGPYLTWTQIQSYLHPEDQELARLAVENSIREHSDYDIEYRLMLSDGTYRWVAAKGRAQ 1020

Query: 547  KLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
                 +       + DISE KQ +  L   +        
Sbjct: 1021 YNASGNVLGMFGVVQDISERKQAEETLRQTEARLYVALK 1059



 Score =  117 bits (292), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 49/449 (10%), Positives = 122/449 (27%), Gaps = 32/449 (7%)

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEKY 259
           +  + + +  +    V   + D      P   L    K ++            +    + 
Sbjct: 13  QDLAKIIDQIREGFWVLSWEGDCTYSNQPQAELMGKSKQEIIGNNIRELFPQWIGTEIEQ 72

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
                         ++      Q   +            +   +           F E  
Sbjct: 73  KFHQIITEKTASNFEYLDT-ARQRWYEYRVNPTAQ--GLAILTIDITERKRTEKTFQESI 129

Query: 320 NLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
                 ++  P   ++  + G + Y NP++  + ++   D I         +      + 
Sbjct: 130 EQFRAFMNHSPASAWIATAEGRILYLNPTYFRMFQFPQTDVIGKT------IAEIYSEEF 183

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
                    +   T             N +    + +          E M   G+  +  
Sbjct: 184 AQKFLENNRQVFETQQPVETIEVAPLHNGKTGQFLVYKF--PIFGQGEEMLIGGVAIDIT 241

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
           + +  +  ++    Q+ +ILE+ +DG    +R+      N+   +L     +++L K + 
Sbjct: 242 ERQEFEASLKAANQQISNILESITDGFIAFDRQWRYTYLNQEACRLLEKSPQELLGKTWQ 301

Query: 499 VFLE--QNTPSVMNHYLTEILSLDLRQTLEK--ITLGSTKEEKLLSLRIIIKKLPFSSCY 554
                       + + L   +   +    E     +    E                   
Sbjct: 302 ECFPQVPQEDPEVLNQLQRAIDEQITVKFENFCQVINRWLEVSAFPFS---------EGL 352

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
           +L   DI+E KQ + +   A+       +  S+ +  VS    T L ++           
Sbjct: 353 ALYFRDITERKQ-EEQRKAAQYAVTYALASTSNLVDTVS----TILQSLCETLHWQLGIF 407

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVND 643
           +    + + + Y N    S   +   + +
Sbjct: 408 WRVDRHQQVLRYLNSWHNSSIDLEKFIEE 436



 Score =  104 bits (259), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 48/419 (11%), Positives = 110/419 (26%), Gaps = 27/419 (6%)

Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA 248
                    K     F    +     + ++ E        +    L    ++  L ++  
Sbjct: 519 ERKRTEEALKESQNLFQSFMDHSPIAAFIKDETGQHIYVNAWFEQLFAGKEIIGLRDFEI 578

Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
           +     +  +   L   +S+   Q        +       F     +S            
Sbjct: 579 YPQVAAQQFRANDLKVLDSNEVMQFLETLPQEDGEHYYVSFKFPFQDSSGRKLVAGVSMD 638

Query: 309 PSLSAYFDEGENLTPETVDKCPIPF--FVYSHGNL---FYANPSFLLLTKYKSVDDIEIA 363
            S     +E   L+ E            VY    L    Y +     L      D  +  
Sbjct: 639 VSDRIRAEEALRLSDERFRLAARAVKGIVYDWDVLSGTVYRSEGLYPLMGIHPDDVPQTR 698

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
              S  L    L+     +   L            R   ++      + +    +   +Q
Sbjct: 699 DWWSERLHPDDLAR-IMPEMGFLIEGRGELYEFEYR---VRHEDGRWIEVWDQGYLLRDQ 754

Query: 424 FPENMPQNGIEPEDVDTRINKRK----MEI---EVMQLCSILEATSDGIAIINRE-GIIL 475
               +   G   +  + +  + +    +E    E   L ++L+    G+ + N   G I+
Sbjct: 755 NGGLLRVVGFTSDITERKQAEAEKQQLLEQIKTEREFLEAVLQQMPAGVMVANAATGDIM 814

Query: 476 STNRAVSKLFGYP-----VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL-EKIT 529
            TN  +  ++              +        +      H      S+   + + E+  
Sbjct: 815 LTNEQIKYIWRISSLLPFENIHQSERLYHGFHLSGRPYQLHEWPLFRSVKTGEVVREEEI 874

Query: 530 LGSTKEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
           +    +     + +    +  +        +T +DIS+ KQ +  L  + +      S 
Sbjct: 875 IFLRGDGTWGIMLVNSAPIRDTQGNIKAGVVTFYDISDRKQAEEALQESAQRLSLALSA 933



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 49/527 (9%), Positives = 124/527 (23%), Gaps = 37/527 (7%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYG 145
           W   A G +  ++    +        +IG  + ++           +   + + Q     
Sbjct: 144 WIATAEGRILYLNPTYFRMFQFPQTDVIGKTIAEIYSEEFAQKFLENNRQVFETQQPVET 203

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
                   G      +     PI+    E     G  I        +  A  K  +++ S
Sbjct: 204 IEVAPLHNGKTGQFLVY--KFPIFG-QGEEMLIGGVAI--DITERQEFEASLKAANQQIS 258

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQ-------SPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
           ++ E           ++                P   +             +D  +  + 
Sbjct: 259 NILESITDGFIAFDRQWRYTYLNQEACRLLEKSPQELLGKTWQECFPQVPQEDPEVLNQL 318

Query: 259 YPLLTSEES-----------SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
              +  + +              E   F          +      Q   +++ +Y     
Sbjct: 319 QRAIDEQITVKFENFCQVINRWLEVSAFPFSEGLALYFRDITERKQEEQRKAAQYAVTYA 378

Query: 308 HPSLSAYFDEGENLTPETVDKC--PIPFFVYSHGNLFYANPSFLLLTKYK-SVDDIEIAG 364
             S S   D    +     +     +  F +                     ++      
Sbjct: 379 LASTSNLVDTVSTILQSLCETLHWQLGIF-WRVDRHQQVLRYLNSWHNSSIDLEKFIEEN 437

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIA--ASARLHTIQWNRENSLAMT--FIPFEK 420
              T      +           + SD+        A L          L +   F    +
Sbjct: 438 QQKTFELGRGIPGGIWATRQGSFLSDQQTAKSGLQAVLAFPIGIGAEILGVIEFFSDQPQ 497

Query: 421 ANQFPENMPQNGIEPED---VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
            N          I  +    ++ +  +  ++       S ++ +     I +  G  +  
Sbjct: 498 KNDANLLELMKVIGSQIGQFMERKRTEEALKESQNLFQSFMDHSPIAAFIKDETGQHIYV 557

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
           N    +LF    ++I+         Q           ++L  +      +       E  
Sbjct: 558 NAWFEQLF--AGKEIIGLRDFEIYPQVAAQQFRANDLKVLDSNEVMQFLETLPQEDGEHY 615

Query: 538 LLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
            +S +   +        +    D+S+  + +  L  + +     +  
Sbjct: 616 YVSFKFPFQDSSGRKLVAGVSMDVSDRIRAEEALRLSDERFRLAARA 662



 Score = 75.4 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 20/236 (8%), Positives = 55/236 (23%), Gaps = 4/236 (1%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            +D        +E L    G    + IG  + +V      D    +  +L  +     +  
Sbjct: 1190 LDQDLRYIYANEALAAINGVPLKEHIGRTVWEVLPAWASDIQVVVEQVLATKQPLLNQEV 1249

Query: 149  LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                    LY    +   P+Y  + E  G                    +  ++++  L 
Sbjct: 1250 SGETNPPGLYRYGLVNYYPVYLPDGEVLGVG--ITSMDISELKRTEQALRESEERYRSLV 1307

Query: 209  EIKKGHSSVEKEKYDIFSQQSPPPHLRMK--NKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
                        +      Q             ++  T     +D     + +      +
Sbjct: 1308 TASSQIVWRANHQGQFVDVQGWEEFTGQPVEELLAGSTAAIHPQDLERVRQIWYKAVKSK 1367

Query: 267  SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
            ++   +      +            + +   E + ++    +       +      
Sbjct: 1368 TTYEVEHRIRKYDGTYEYFAIRGIPVLDAGGEVYTWVGMTTNIHQRKQAEMEREQL 1423



 Score = 65.4 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/369 (8%), Positives = 82/369 (22%), Gaps = 36/369 (9%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK 146
           W +   G     ++   + +G    ++IG  + ++               +  + T    
Sbjct: 27  WVLSWEGDCTYSNQPQAELMGKSKQEIIGNNIRELFPQWIGTEIEQKFHQIITEKTASNF 86

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVH-VNRVDNDPRALGKRLDKKFS 205
             L     T      +    P           +G  I+              +   ++F 
Sbjct: 87  EYL----DTARQRWYEYRVNPT---------AQGLAILTIDITERKRTEKTFQESIEQFR 133

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSP------PPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
                    + +   +  I             P   +  K  +           L+  + 
Sbjct: 134 AFMNHSPASAWIATAEGRILYLNPTYFRMFQFPQTDVIGKTIAEIYSEEFAQKFLENNRQ 193

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS-KESFEYLSHRNHPSLSAYFDEG 318
              T +     E    H     Q+   ++    Q          +         A     
Sbjct: 194 VFETQQPVETIEVAPLHNGKTGQFLVYKFPIFGQGEEMLIGGVAIDITERQEFEASLKAA 253

Query: 319 ENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
                  ++     F  +       Y N     L +    + +            P++  
Sbjct: 254 NQQISNILESITDGFIAFDRQWRYTYLNQEACRLLEKSPQELL-GKTWQECF---PQVPQ 309

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
            +      L R+    I                       + + + FP +        + 
Sbjct: 310 EDPEVLNQLQRAIDEQITVKFENF----------CQVINRWLEVSAFPFSEGLALYFRDI 359

Query: 438 VDTRINKRK 446
            + +  +++
Sbjct: 360 TERKQEEQR 368


>gi|152993440|ref|YP_001359161.1| hypothetical protein SUN_1857 [Sulfurovum sp. NBC37-1]
 gi|151425301|dbj|BAF72804.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 1156

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 115/497 (23%), Positives = 207/497 (41%), Gaps = 25/497 (5%)

Query: 320  NLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
            N     +         +    N  Y +PS+  +  ++  +         +       +++
Sbjct: 532  NRMELALAGSKTAVLDWDFRDNSMYISPSWKEMLGFRDDEL----PNAPSSWFRRAHTED 587

Query: 379  NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
                  ML   ++  I      H ++    + + +        ++  + +   G   +  
Sbjct: 588  KKTILAMLREHEKNKIRFFESNHRLKHKDGHWVWVLGRAQILFDENGKKVRMIGTHTDIT 647

Query: 439  DTRINKRKMEIEVMQLCS--ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
              +      E ++       I+E   DGI   + EG + S N+   +LFGY   +I+ K 
Sbjct: 648  KEK------ESQIKYFQQVQIMEQIHDGIVTTDLEGNVTSWNKGAEELFGYSQSEIIGKH 701

Query: 497  FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--- 553
             ++   +     +   +   L        +      TK +K++ + + +  L        
Sbjct: 702  ISLIYRKKDIPGIKERIRASLE--ETGLYQGDLTFITKSKKIIPVSLSLSLLKDEHGNVA 759

Query: 554  -YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
                   DI++ K+++  L  AK+ AE+ +  KS+FLA +SHEIRTPL+AI+GF +++K 
Sbjct: 760  GRIGINQDITQRKKDEKSLLKAKRKAEESAKSKSEFLANMSHEIRTPLSAILGFIDLLKK 819

Query: 613  QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
            +        +  EY + ID S   +L I+ D+LD SKIESGK+ +     S        I
Sbjct: 820  ENI----EKKAKEYVDIIDTSSKGLLKIIEDILDFSKIESGKLEIDKIDFSPKIEFETII 875

Query: 673  SLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
             L      EK I +      ++P  I  D   +KQI  N+LSNAI FT  G +I ++  +
Sbjct: 876  HLFLAKCAEKDIALTLILDESLPETIHTDPLRIKQIISNLLSNAIKFTDQGKKITVTINY 935

Query: 732  TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
              N  + + V+D G G+   +L    + F Q  +S      GTGLGL ++  +V    G+
Sbjct: 936  K-NGFLNVSVKDEGKGIAKEKLSHIFESFAQEDSSTTREYGGTGLGLTISYRLVKILGGE 994

Query: 792  FYIFSTPAKGTLIEIIF 808
             ++ S    G+      
Sbjct: 995  LHVKSKVGAGSEFYFSI 1011



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/138 (12%), Positives = 39/138 (28%), Gaps = 5/138 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147
            D  G +   ++   +  G    ++IG  +  +     I      I   L+    + G  
Sbjct: 673 TDLEGNVTSWNKGAEELFGYSQSEIIGKHISLIYRKKDIPGIKERIRASLEETGLYQGDL 732

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
           T      +   +P+ L+   +   +   +G    GI               +  +K    
Sbjct: 733 TFITK--SKKIIPVSLSLSLLKDEHGNVAGR--IGINQDITQRKKDEKSLLKAKRKAEES 788

Query: 208 HEIKKGHSSVEKEKYDIF 225
            + K    +    +    
Sbjct: 789 AKSKSEFLANMSHEIRTP 806



 Score = 46.6 bits (109), Expect = 0.016,   Method: Composition-based stats.
 Identities = 21/154 (13%), Positives = 55/154 (35%), Gaps = 8/154 (5%)

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
           + +   +N+   E     L + LE + DGI ++      L  N+ +  +FGY   +   K
Sbjct: 388 DALTNLLNRTNQERMEEDLIA-LEKSQDGILVL-ENDTFLQCNQKILDMFGYSTTENFVK 445

Query: 496 PFTVFLEQNTPSVM------NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
            +   L                 +  +   +     E + +    E   +++ +  + + 
Sbjct: 446 AYPHKLFPGKQPDGSYSSVKMEKMKALTKKNGSHQFECLNVKQNGEPFWVNIILSYRMIN 505

Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
               + +   ++++ K ++N+ S      E   +
Sbjct: 506 EKEIFHMVYRNVTDKKNQENENSFITNRMELALA 539


>gi|218782287|ref|YP_002433605.1| multi-sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218763671|gb|ACL06137.1| multi-sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 1349

 Score =  386 bits (991), Expect = e-104,   Method: Composition-based stats.
 Identities = 109/535 (20%), Positives = 205/535 (38%), Gaps = 24/535 (4%)

Query: 281 NQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHG 339
              + +  F                    +      + E    E V           S G
Sbjct: 404 ALISPQPLFTPEGEYRGSLLAATDITARKTAERALQKSEEQYRELVHSANSIIMKTDSLG 463

Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399
            +   N        Y   + +     L T+L  PK          M+ +           
Sbjct: 464 RITLFNEYAQKFFGYSEEEVL-GKSLLETIL--PKEDSLGRDMVFMMEKFLEDPDRFRIN 520

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459
            H  +    + + + +      ++  E +    I  +    R+ ++ +     +   + +
Sbjct: 521 DHENEKKNGDRVWVMWTNKAIRDEQGELVEILSIGSDITSRRMMEQAIRESEERFRYLAD 580

Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL 519
           AT + I I   EG+ L  N+A S +FGY +++++             +   + L ++ + 
Sbjct: 581 ATHEAILIA-EEGVCLVANQAASDMFGYSLQELVGDSCLKLFAGEGRTD-LNILADMYAG 638

Query: 520 DLRQTLEKITLGSTKEEKLLSLRI--IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI 577
                  K TL   K+     + +     +        L + DI+  K+ +  L +A   
Sbjct: 639 PP-----KETLALRKDGSSFPVEVKSNAMQYRDKEVTVLAIQDITYKKRSEEALRYAAVE 693

Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
               +  K +FLA +SHEIRTP+  IIG + ++++       N    +    I  S   +
Sbjct: 694 -RAANKAKGEFLANMSHEIRTPMNGIIGMASLLEDTPL----NNEQKDLLQTISSSAESL 748

Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-R 696
           L I+ND+LD SKIE+GK++L          V +  +L+   A +K + I +  ++ +P +
Sbjct: 749 LRIINDILDYSKIEAGKLDLERIEFDPRSTVEDVTALMAKTAEQKGLQITSLISHKVPSK 808

Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYE 752
           ++ D   ++Q+ +N+  NAI FT  G ++I+       +     +   + DTG+G+    
Sbjct: 809 VVGDPGRLRQVLMNLTGNAIKFTSKG-EVIVRALVDEEDRGGATLRFEIIDTGIGVPQSR 867

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           L    + F Q   S   R  GTGLGL ++K +     GK    S   +G+L    
Sbjct: 868 LSSLYESFTQADPSTTRRYGGTGLGLTISKQLCRLMGGKIGAESKEGEGSLFWFT 922



 Score = 94.3 bits (233), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 38/375 (10%), Positives = 101/375 (26%), Gaps = 26/375 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID +G+L   + +L +  G    ++  +R+ D+ D  +         L K+      +  
Sbjct: 334 IDVNGHLTYANPKLLEKSGYTFDEIKKIRISDIFDPNNKGVWKSQMALQKQGLGDQFELR 393

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           L   +G    +   ++  P+++   E+ G                    ++ ++++  L 
Sbjct: 394 LVRKDGG--VIDALISPQPLFTPEGEYRG--SLLAATDITARKTAERALQKSEEQYRELV 449

Query: 209 EIKKGHSSVEKEKYDIFSQQS--------PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
                          I                 +  K+ + ++          +      
Sbjct: 450 HSANSIIMKTDSLGRITLFNEYAQKFFGYSEEEVLGKSLLETILPKEDSLGRDMVFMMEK 509

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
            L   +       +    N ++         +++   E  E LS  +  +     ++   
Sbjct: 510 FLEDPDRFRINDHENEKKNGDRVWVMWTNKAIRDEQGELVEILSIGSDITSRRMMEQAIR 569

Query: 321 LTPETVDKCPI----PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
            + E              +   G    AN +   +  Y   + +        L      +
Sbjct: 570 ESEERFRYLADATHEAILIAEEGVCLVANQAASDMFGYSLQELVG--DSCLKLFAGEGRT 627

Query: 377 D--------NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
           D            K  +  R D +      + + +Q+  +    +         +  E +
Sbjct: 628 DLNILADMYAGPPKETLALRKDGSSFPVEVKSNAMQYRDKEVTVLAIQDITYKKRSEEAL 687

Query: 429 PQNGIEPEDVDTRIN 443
               +E      +  
Sbjct: 688 RYAAVERAANKAKGE 702



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 59/161 (36%), Gaps = 13/161 (8%)

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
           I  + ++    +   ++E  +DG+AII+  G +   N  + +  GY  ++I +   +   
Sbjct: 308 IASQALKRSEERYRQLVETMNDGLAIIDVNGHLTYANPKLLEKSGYTFDEIKKIRISDIF 367

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL----PFSSCYSLT 557
           + N   V     +++         +       K+  ++   I  + L           L 
Sbjct: 368 DPNNKGVWK---SQMALQKQGLGDQFELRLVRKDGGVIDALISPQPLFTPEGEYRGSLLA 424

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESS------HKSDFLARV 592
             DI+  K  +  L  +++   +          K+D L R+
Sbjct: 425 ATDITARKTAERALQKSEEQYRELVHSANSIIMKTDSLGRI 465



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/147 (12%), Positives = 43/147 (29%), Gaps = 7/147 (4%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI----LHIDPNNHIGDLLKRQNTW 143
             D+ G +   +E   K  G    +++G  L +        L  D    +   L+  + +
Sbjct: 458 KTDSLGRITLFNEYAQKFFGYSEEEVLGKSLLETILPKEDSLGRDMVFMMEKFLEDPDRF 517

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                    +  +  V +      I     E       G               +  +++
Sbjct: 518 RINDHENEKKNGD-RVWVMWTNKAIRDEQGELVEILSIGS--DITSRRMMEQAIRESEER 574

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSP 230
           F +L +       + +E   + + Q+ 
Sbjct: 575 FRYLADATHEAILIAEEGVCLVANQAA 601


>gi|86142612|ref|ZP_01061051.1| PAS domain protein [Leeuwenhoekiella blandensis MED217]
 gi|85830644|gb|EAQ49102.1| PAS domain protein [Leeuwenhoekiella blandensis MED217]
          Length = 1175

 Score =  386 bits (991), Expect = e-104,   Method: Composition-based stats.
 Identities = 124/708 (17%), Positives = 256/708 (36%), Gaps = 46/708 (6%)

Query: 133 IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192
           +   ++    W  +  L  +   N  + +           +E    R +G          
Sbjct: 208 VQKAIQFGTPWDAELQL--VTAKNREIWVRALGKA---EFKEGVCVRLYGAFQDINERKI 262

Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY------ 246
            +       ++F  + +       +      +         +    +             
Sbjct: 263 AQLDYNVTKERFEKIVQNSAIGIILVHVDGHLLLANPASLKIFGFQEEQLNEALKLTFRN 322

Query: 247 YAHKD--DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
           + H D  +     +  L+     S   +  F+ I+  +   +     ++         +S
Sbjct: 323 FIHPDFLEEAINYRAQLIAGAIDSYQMEAKFYRIDRVEIWCRLSVSLVKGEDGIKDRIIS 382

Query: 305 HRNHPSLSAYFD----EGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDD 359
                +   + +    E         +  P     V   G+    N +   +  YK  + 
Sbjct: 383 QVEDITERKHLEFKAKEHAKRFTTAFEYSPNGMGMVSIEGDWLMVNQNLASIFGYKKEEF 442

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
           I      S+ L  P     ++ +   L   +    +   R   +  + +    +      
Sbjct: 443 INKR---SSELTHPDDLKKDSKQLKALINLEIDTYSIEKRF--VHRSGKIIHGL-LNVSV 496

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS-DGIAIINREGIILSTN 478
             ++    +   G   +       ++ ++  + +   ++ AT+   I   N +GII   N
Sbjct: 497 VTDEQGTPLYLIGQISDLSKRVKAEQALQKSLTEFQQLMNATTKVSIMETNLDGIIQKFN 556

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
           R    L GY  E+++ +            +      +       +  +       K+   
Sbjct: 557 RGAENLLGYTAEEVVGRMNVSSFHTEEEFIEREADHQ-------KFYDAEWTYKRKDGST 609

Query: 539 LSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
             ++++I  +   +     Y     DIS  K+ +  L  A+K AE  +  KS+FLA +SH
Sbjct: 610 FPVKLVITPVHNETGDVFGYLGVAIDISNLKEMEYSLVEARKKAEAANRSKSEFLANMSH 669

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           EIRTPL  IIGF++++      P       +Y   +  S N ++D++ND+LD SKIE+GK
Sbjct: 670 EIRTPLNGIIGFTDLLMQTSLAPF----QQKYMQTVHNSANTLMDLINDILDFSKIEAGK 725

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILS 713
           + L+ E   L E  ++ + +V+  A++K + +    + ++ R + AD   ++QI +N+L 
Sbjct: 726 LELNEERTDLIELCTQTVDIVKHQAHQKGLEMLLQISPDVKRFVQADSIRLRQILINLLG 785

Query: 714 NAIHFTPSGGQ-IIIS----TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
           NA+ FT  G   + ++        +  E    +RDTG+G+    + K    F Q   S  
Sbjct: 786 NAVKFTDQGEVALTVTASNTIAQENEAEFKFEIRDTGIGIDPKNINKIFNAFDQEDVSTT 845

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
            +  G+GLGL ++  +++    K  + S    G+       L     P
Sbjct: 846 RKYGGSGLGLTISNRLLNLMGSKLKVNSVQGTGSTFYFDLKLKTEEEP 893



 Score = 57.7 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 28/287 (9%), Positives = 79/287 (27%), Gaps = 22/287 (7%)

Query: 59  QESVSNTNYLDSENTFVFDPIPRTVRFT--WNIDA--------HGYLKEISEELPKTIGN 108
              +S    +       F       RFT  +             G    +++ L    G 
Sbjct: 378 DRIISQVEDITERKHLEFKAKEHAKRFTTAFEYSPNGMGMVSIEGDWLMVNQNLASIFGY 437

Query: 109 YAFKMIGMRLCDVSDILHIDPNNHIGDLL--KRQNTWYGKTTLWPIEGTNLYVPIDLAAL 166
              + I  R  +++    +  ++     L     +T+  +       G  ++  ++++  
Sbjct: 438 KKEEFINKRSSELTHPDDLKKDSKQLKALINLEIDTYSIEKRFVHRSGKIIHGLLNVSV- 496

Query: 167 PIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL---DKKFSHLHEIKKGHSSVEKEKYD 223
            +           G  I  +++     +AL K L    +  +   ++    ++++     
Sbjct: 497 -VTDEQGTPLYLIG-QISDLSKRVKAEQALQKSLTEFQQLMNATTKVSIMETNLDGIIQK 554

Query: 224 IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY 283
                        +  V  +     H ++    E        +     +  +   + + +
Sbjct: 555 FNRGAENLLGYTAEEVVGRMNVSSFHTEE----EFIEREADHQKFYDAEWTYKRKDGSTF 610

Query: 284 TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330
             K     + N + + F YL      S     +       +  +   
Sbjct: 611 PVKLVITPVHNETGDVFGYLGVAIDISNLKEMEYSLVEARKKAEAAN 657


>gi|303248462|ref|ZP_07334721.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
            JJ]
 gi|302490173|gb|EFL50092.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
            JJ]
          Length = 1324

 Score =  386 bits (991), Expect = e-104,   Method: Composition-based stats.
 Identities = 128/805 (15%), Positives = 260/805 (32%), Gaps = 64/805 (7%)

Query: 59   QESVSNTNYLDSENTFVFDPI------PRTVRFTWNIDAHGYLKEISEELPKTIGNYAFK 112
             + VS          F               +  + +D  G    ++  L +  G     
Sbjct: 253  AQVVSELLSAAEGAAFRKRAEQYRDLYDNAAQGLFRLDTAGRPLAVNTTLARLFGCRDAN 312

Query: 113  MIGMRLCDVSDILHIDPNNHIG---DLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIY 169
                +      ++ +D           L + +  + +T  +  +G+   +   + A    
Sbjct: 313  DCLRQARTDEHLVRLDIPQRRELLVRALGQADPVFFETHFYHHDGSMARIKCYVRAQ--R 370

Query: 170  SRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS 229
                      G           +  A          H+ E+     +  +  +   +   
Sbjct: 371  DALGSPVCLEGACADFSALPPPENAAGENGYRSIVEHITELICRIDAAGRLLFVNTAFAR 430

Query: 230  PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYF 289
                        +       +D  L   +   ++    +   +      +     ++  +
Sbjct: 431  YWGKTAEACVAENFRSPMPDEDADLVARRLAAISPVRPTTGFEHRVLRPDGRIRWQRWIY 490

Query: 290  GTLQNNSKESFEYLSHRNHPSLSAYFDEGEN----LTPETVDKCPIPFFVYS-HGNLFYA 344
              + + +    EY +     +     +E            ++  P+  F           
Sbjct: 491  RAMFDEAGTLCEYQAVGRDVTARKLAEERLRAEHARARNMLEALPLAVFFKDVERRFTGC 550

Query: 345  NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI------AASA 398
            N +F   +       +   G L   L        +AI   +L +  R          A A
Sbjct: 551  NQAFETQSGIARERLVG--GTLDDFLGEADARPYHAIDRELLAKGGRQVYEAVLPTPAGA 608

Query: 399  RLHTIQW----NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD--------------- 439
            R   +      +   ++A          +            + ++               
Sbjct: 609  RHMIVHKGLLHDAGGAVAGIIGAAIDITERKLADRAAVQVRDALEAEALRLRQRMAGAIE 668

Query: 440  -TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
                 + ++  E   L ++L    DGI ++  +  + S+N+A+  L+     +++ +   
Sbjct: 669  AREQAESRLRRERRFLDTVLSGIQDGICVLTPDLTVTSSNKAMRALYA-ERGEMVGRKCF 727

Query: 499  VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSL 556
                       +      L+           + S      + L            S    
Sbjct: 728  DLFHGRGMPCNDCPSLRALATSKLAISLVPKIESGSASGWVELFCYPLFDDDGVVSGVVE 787

Query: 557  TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
             + DI+  K+ + +L+ A + AE  S  K  FLA +SHEIRTPL A++G+ +++   R  
Sbjct: 788  IVRDITAGKRLEAELADALERAEGASQAKGAFLANMSHEIRTPLNAVLGYVQLMLADRLE 847

Query: 617  PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
            P    R  E    ++ S   +L I+ND+LD SKIE+G+M L  EP  L   +   +   +
Sbjct: 848  P----RQRERLTVVEESAGTLLSIINDILDYSKIEAGRMELKAEPFDLVRGLEGVLKEQE 903

Query: 677  LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
            + A  K + +    A N+P  +  D   ++Q+  N+++NA+ +T  GG + +        
Sbjct: 904  VLAKAKGLDLVLDIAENVPGAVRGDGLRLRQVLRNLVNNAVKYTDKGG-VRLGVAIADAP 962

Query: 736  -----------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
                        +   V DTG+G+   + E     F QI      R  GTGLGL + + +
Sbjct: 963  CAASGGEGGRLWLRFTVADTGIGIPYEQQETIFDSFTQIDGGLTKRQAGTGLGLAICRRL 1022

Query: 785  VDANMGKFYIFSTPAKGTLIEIIFP 809
                 G   + STP +G+   +  P
Sbjct: 1023 AGLMGGTISLESTPGQGSAFRLECP 1047



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/367 (7%), Positives = 77/367 (20%), Gaps = 17/367 (4%)

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247
                            + + +  +    V          Q+P     +  +        
Sbjct: 24  TSAGQAARTLLDAGAGEALVLDGGRPLGVVTTRGLARVLVQTPDTAAHLAVRDLMDPVAV 83

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKK-QYFGTLQNNSKESFEYLSHR 306
           +   D L      LL +    L   +                               +  
Sbjct: 84  SLDTDYLPAALRHLLAAPSRRLAVVDAKGRAVGILAPFHVTRLCGQIGEFPGRTVASAMA 143

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
                +A  +   ++    +        V        A       T   +V  +     +
Sbjct: 144 RAVVTAAVGETLPSVLARMIRTGVGGVVVAEADRPRGA------FTTRDAVALLAGGRDI 197

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
           +       +        V +        A S        +   +  +             
Sbjct: 198 ANCRVEAVMRAPV----VAISPQLPLTEAVSG------MDGAGAGRLAVTDAAGYLLGLL 247

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
                     ++ +            Q   + +  + G+  ++  G  L+ N  +++LFG
Sbjct: 248 TWTDVAQVVSELLSAAEGAAFRKRAEQYRDLYDNAAQGLFRLDTAGRPLAVNTTLARLFG 307

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
               +   +            +       + +L     +   T     +  +  ++  ++
Sbjct: 308 CRDANDCLRQARTDEHLVRLDIPQRRELLVRALGQADPVFFETHFYHHDGSMARIKCYVR 367

Query: 547 KLPFSSC 553
               +  
Sbjct: 368 AQRDALG 374


>gi|329930043|ref|ZP_08283668.1| PAS domain S-box protein [Paenibacillus sp. HGF5]
 gi|328935442|gb|EGG31914.1| PAS domain S-box protein [Paenibacillus sp. HGF5]
          Length = 642

 Score =  386 bits (991), Expect = e-104,   Method: Composition-based stats.
 Identities = 116/499 (23%), Positives = 226/499 (45%), Gaps = 30/499 (6%)

Query: 319 ENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
           + L        PI    V   G+    NP+   +  Y   + +               S+
Sbjct: 10  QALFEHVYKSAPIGIALVTIEGSWISVNPAACKMFGYTDEELMAQPA------TDYIYSE 63

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
               K  +L   D      S     +  +     A   +   + +Q    +       + 
Sbjct: 64  CINNKDKLLQSLDEASSTISVEKQFVHRDGNVIWASIHVSLVRDDQDQTPLFFISQIVDI 123

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
            D+++ ++K++  + +  S+ +   D I   N EG I++ N+   +L G+ + +++    
Sbjct: 124 TDSKVAEQKLQESIERYTSLKKYNHDAIISFNLEGRIINGNQMAEQLTGFKIPELIGTKI 183

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL---PFSSCY 554
           +  + +   + +     + ++ +             K+   + +   +  +     +  +
Sbjct: 184 SNLIGERNLARVLSSAADYVAAEKGINCIH-----HKDGHQVEVLATLAPIVIHGKNVGF 238

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
            +   D++E K+    L   K+ AEK +  KS+FLA +SHEIRTP+  +IG +++I    
Sbjct: 239 YIIAKDMTEQKR----LIIEKEAAEKTNKAKSEFLAMMSHEIRTPMNGVIGMTDLILETE 294

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                +    EY   I +SG  +L+I+ND+LD SKIESG+  L  E  SL  A+SE +++
Sbjct: 295 L----DEEQQEYVQIIKKSGTTLLNIINDILDFSKIESGRTELVEETFSLRTALSETLNM 350

Query: 675 VQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
           +   A +K I + TS A+++P ++  D+  ++Q+ +N+LSNAI FTP+G  + IS     
Sbjct: 351 ILPKALDKNIEVTTSVASDVPNQVYGDVTKLRQVLMNLLSNAIKFTPNGA-VSISVQCVR 409

Query: 734 NEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
           ++     +   V DTG+G+ + ++ +  +PF Q+ +    + EGTGLGL + K +V    
Sbjct: 410 DQANSELIQFSVTDTGIGVPSEKIAQLFEPFYQVDHYMTRQVEGTGLGLAICKKLVQLMG 469

Query: 790 GKFYIFSTPA-KGTLIEII 807
           G  +    P  +G++    
Sbjct: 470 GDIWYERNPNQQGSVFTFT 488



 Score = 48.5 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/144 (10%), Positives = 41/144 (28%), Gaps = 4/144 (2%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL-KRQNTWYGKTTLW 150
            G    ++    K  G    +++     D      I+  + +   L +  +T   +    
Sbjct: 30  EGSWISVNPAACKMFGYTDEELMAQPATDYIYSECINNKDKLLQSLDEASSTISVEKQFV 89

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
             +G  ++  I ++   +     +   F    IV             +   ++++ L + 
Sbjct: 90  HRDGNVIWASIHVSL--VRDDQDQTPLFFISQIV-DITDSKVAEQKLQESIERYTSLKKY 146

Query: 211 KKGHSSVEKEKYDIFSQQSPPPHL 234
                     +  I +       L
Sbjct: 147 NHDAIISFNLEGRIINGNQMAEQL 170


>gi|298674344|ref|YP_003726094.1| multi-sensor signal transduction histidine kinase [Methanohalobium
           evestigatum Z-7303]
 gi|298287332|gb|ADI73298.1| multi-sensor signal transduction histidine kinase [Methanohalobium
           evestigatum Z-7303]
          Length = 837

 Score =  386 bits (991), Expect = e-104,   Method: Composition-based stats.
 Identities = 115/500 (23%), Positives = 212/500 (42%), Gaps = 16/500 (3%)

Query: 313 AYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
              ++ E       +        V  +G +   N     +  Y+  + I  +      + 
Sbjct: 348 QALEKSEERYRSIFETAASLITSVDENGTIVDCNNQIKNILGYEKEEVIGQS------MT 401

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
                D       +L+       + +     ++ + E  + +                  
Sbjct: 402 KIIHPDYVNKSFEILHEILNYGFSYNKEYKMVRKDGE-LIDVLINSSGVDKINGNYSRTI 460

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
            I  +   ++  + +++    +   + E  +D I   + +G IL  N    +  GY   +
Sbjct: 461 CIINDITKSKEFEHELKKSEEKFRKVTEQAADVIIAYDFDGNILYVNNLACEKLGYTKNE 520

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS--LRIIIKKLP 549
           +L    T    +N       Y   +   +   ++   T    K+  +    LR+ +  L 
Sbjct: 521 LLSMNITDIDPENNIETYRKYWYGLSQNN---SVHIETSRKRKDGSVYPAELRMTLIDLN 577

Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                     D++  K+ +  L +AK  AE  S  KSD LA V+HE+RTPLT+IIGFS+V
Sbjct: 578 GKPVILGFSRDMTVQKEAEENLINAKLEAEAASQAKSDILANVNHELRTPLTSIIGFSDV 637

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           +   + G L N     Y + +  +G  +LD++ D+LD+SKIESGK  L++E +S+ E V+
Sbjct: 638 LLKGKAGDL-NESQKMYLSRVHNNGKHLLDLITDILDLSKIESGKSGLNYERISIIELVN 696

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
           +    +Q + + K +++ +   + +  I AD   +KQI  N+L NA+ FT  G  I +  
Sbjct: 697 DLKEYIQPFVSNKVLILHSRVDSGLNYIYADYIKIKQILSNLLYNAVKFTEEGS-ITLEV 755

Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
           +   ++ V   V DTG+G+     E     F Q+ +    + +GTGLGL L   +V+ + 
Sbjct: 756 SQNEDD-VQFSVIDTGIGIPKGSHEAIFDSFKQLDSGPARKYQGTGLGLALVNKLVNMHG 814

Query: 790 GKFYIFSTPAKGTLIEIIFP 809
           G+ ++ S   KG+      P
Sbjct: 815 GQIWVESEIKKGSRFTFTIP 834



 Score = 78.5 bits (192), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 27/192 (14%), Positives = 61/192 (31%), Gaps = 9/192 (4%)

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
                 +TF+      +            +  + +  +  +  E      + E +   I 
Sbjct: 3   GGCINHLTFLLSTSPIKVENESKVLVNFLDISERKKVQEDLRKEKKFFERVAETSPISIT 62

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT-----EILSLDL 521
            +++ G I+  N    K+ G    DI R+ +     + T    N +       E++    
Sbjct: 63  HLDKSGNIIYANHTAEKVLGLSKNDINRRTYDDVKWKITDYDGNDFPQDELPFELVKKYH 122

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNKLSHAKKI 577
           +   +       K  K + L I    +             + DI++ K  ++ L HA   
Sbjct: 123 QPVYDVQHAIEWKNGKRIYLSINAAPIFDKYGNFDGMIAAIEDITKQKNTESNLEHALYN 182

Query: 578 AEKESSHKSDFL 589
           + +     ++ L
Sbjct: 183 SHEREKEINELL 194



 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/210 (11%), Positives = 55/210 (26%), Gaps = 29/210 (13%)

Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLL 350
           ++N SK    +L       +     + +       +  PI    +   GN+ YAN +   
Sbjct: 20  VENESKVLVNFLDISERKKVQEDLRKEKKFFERVAETSPISITHLDKSGNIIYANHTAEK 79

Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
           +      D                  ++     +      +         H I+W     
Sbjct: 80  VLGLSKNDINRRTYDDVKWKITDYDGNDFPQDELPFELVKKYHQPVYDVQHAIEWKNGKR 139

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI----------EVMQL----CS 456
           + ++       +++           +    +  +  +E           E+ +L     +
Sbjct: 140 IYLSINAAPIFDKYGNFDGMIAAIEDITKQKNTESNLEHALYNSHEREKEINELLNATRT 199

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFG 486
           ILE              +   N A   +F 
Sbjct: 200 ILE--------------VNDFNTAARYIFD 215



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/196 (11%), Positives = 71/196 (36%), Gaps = 9/196 (4%)

Query: 35  ETEKSKKENPCHDSFEQ-SNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHG 93
           E   +  +     +F + +    +N ++       +     +F+          ++D +G
Sbjct: 319 EGGFTDNDAQLAKTFGEYAAIALKNSKAFQALEKSEERYRSIFET---AASLITSVDENG 375

Query: 94  YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQNTWYGKTTLWPI 152
            + + + ++   +G    ++IG  +  +    +++ +  I  ++L    ++  +  +   
Sbjct: 376 TIVDCNNQIKNILGYEKEEVIGQSMTKIIHPDYVNKSFEILHEILNYGFSYNKEYKMVRK 435

Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212
           +G  + V I+ +   +   N  +S  R   I++      +     K+ ++KF  + E   
Sbjct: 436 DGELIDVLINSSG--VDKINGNYS--RTICIINDITKSKEFEHELKKSEEKFRKVTEQAA 491

Query: 213 GHSSVEKEKYDIFSQQ 228
                     +I    
Sbjct: 492 DVIIAYDFDGNILYVN 507



 Score = 46.9 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 18/141 (12%), Positives = 43/141 (30%), Gaps = 16/141 (11%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D  G +  ++    + +G    +++ M + D+    +I+        L + N+ + +T+ 
Sbjct: 498 DFDGNILYVNNLACEKLGYTKNELLSMNITDIDPENNIETYRKYWYGLSQNNSVHIETSR 557

Query: 150 WPIEGTNL-----YVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
              +G+          IDL   P+        GF          V  +          + 
Sbjct: 558 KRKDGSVYPAELRMTLIDLNGKPV------ILGFS-----RDMTVQKEAEENLINAKLEA 606

Query: 205 SHLHEIKKGHSSVEKEKYDIF 225
               + K    +    +    
Sbjct: 607 EAASQAKSDILANVNHELRTP 627


>gi|294496045|ref|YP_003542538.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
 gi|292667044|gb|ADE36893.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
          Length = 729

 Score =  386 bits (991), Expect = e-104,   Method: Composition-based stats.
 Identities = 93/389 (23%), Positives = 185/389 (47%), Gaps = 15/389 (3%)

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
               V  R  ++++E    +  +I  +T+D I + + +G I+  N+A  +  GY  +++L
Sbjct: 345 MWRIVQRRKTEKELEKSEDKFRTIFASTNDAIFVHDLKGNIMEVNKAACETTGYSRDELL 404

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII--IKKLPFS 551
           R          +   +   + E+                 +++  + + I   + +    
Sbjct: 405 RMKTKDINTGLSMEEIPQRIKEVKEKGHAI---FEATFRREDDTTIPVEISARMIEYNDK 461

Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESS-------HKSDFLARVSHEIRTPLTAII 604
               +   DI+E K+ + +L    +   K +         K +FL+ VSHE++TPLT+II
Sbjct: 462 PTILVVARDITERKRAEEELRKYAQDLSKANEELKSLDKMKDEFLSNVSHELKTPLTSII 521

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           G++E++ +   G LG          + R+   +  +V+ LL +S+ ++G +   FE +++
Sbjct: 522 GYTELLNDGSLGELG-EEQKHAEETVMRNTKRLQRLVDSLLYLSRTQAGTVQYDFETLNI 580

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724
            E   + I  +Q+   EK + +      ++P+I  D   +  +  NI+ N+I FTP GG 
Sbjct: 581 SELTDQIIEDLQIQTEEKNLEMIKKIEPDLPQIKGDRDKLTDMFTNIIDNSIKFTPKGGS 640

Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
           I I         + + ++DTG+G+    ++   + F QI +SQ+ +  GTGLGL + K +
Sbjct: 641 ITIFANKEDE-YIHINIKDTGIGIPKDMIDNLFQRFYQIDSSQKRKYGGTGLGLYITKTI 699

Query: 785 VDANMGKFYIFST-PAKGTLIEIIFPLYD 812
           V+A+ G+ ++ S    KGT + I  P+ +
Sbjct: 700 VEAHEGEIWVESEGKGKGTEVHIKLPVAE 728



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 21/163 (12%), Positives = 45/163 (27%), Gaps = 5/163 (3%)

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
              ++    +   GI  +  D    +  M     +   I E +  GI   +  G+I   N
Sbjct: 37  PNISEDGILLGGIGIFEDISDRMKAEEAMRESEKKYRLIFENSPLGIFHFDENGVITHCN 96

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
             +  +     + I+       L+      M   +  +          K    + K+   
Sbjct: 97  ENIMHILDVTRDQIIGFNMLKDLKD---KKMYEAVKAVFQRRSGHYEGKYHSTTGKKATP 153

Query: 539 LSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAE 579
           +                    + DIS+  + +  L   +   E
Sbjct: 154 IKADYSPYISEDGELLGGVGIVEDISDRMKAEEALHLDESRLE 196



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/160 (13%), Positives = 44/160 (27%), Gaps = 29/160 (18%)

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIE-- 361
                      ++ E+             FV+   GN+   N +    T Y   + +   
Sbjct: 348 IVQRRKTEKELEKSEDKFRTIFASTNDAIFVHDLKGNIMEVNKAACETTGYSRDELLRMK 407

Query: 362 ---IAGGLSTLLDAPKL----SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
              I  GLS      ++       +AI      R D T I        I++N + ++ + 
Sbjct: 408 TKDINTGLSMEEIPQRIKEVKEKGHAIFEATFRREDDTTIPVEISARMIEYNDKPTILVV 467

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
                                +  + +  + ++      L
Sbjct: 468 AR-------------------DITERKRAEEELRKYAQDL 488



 Score = 47.7 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 26/241 (10%), Positives = 69/241 (28%), Gaps = 12/241 (4%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D  G + E+++   +T G    +++ M+  D++  L ++        +K +     + T 
Sbjct: 380 DLKGNIMEVNKAACETTGYSRDELLRMKTKDINTGLSMEEIPQRIKEVKEKGHAIFEATF 439

Query: 150 WPIEGTNLYVPIDLAALPI-YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
              + T   +P++++A  I Y+            +              ++  +  S  +
Sbjct: 440 RREDDTT--IPVEISARMIEYNDKPTI-----LVVARDITERKRAEEELRKYAQDLSKAN 492

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV----LKTEKYPLLTS 264
           E  K    ++ E     S +   P   +      L +    +        +         
Sbjct: 493 EELKSLDKMKDEFLSNVSHELKTPLTSIIGYTELLNDGSLGELGEEQKHAEETVMRNTKR 552

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
            +  +                      +   + +  E L  +          + E   P+
Sbjct: 553 LQRLVDSLLYLSRTQAGTVQYDFETLNISELTDQIIEDLQIQTEEKNLEMIKKIEPDLPQ 612

Query: 325 T 325
            
Sbjct: 613 I 613


>gi|134299991|ref|YP_001113487.1| multi-sensor hybrid histidine kinase [Desulfotomaculum reducens
           MI-1]
 gi|134052691|gb|ABO50662.1| PAS/PAC sensor hybrid histidine kinase [Desulfotomaculum reducens
           MI-1]
          Length = 1271

 Score =  385 bits (990), Expect = e-104,   Method: Composition-based stats.
 Identities = 112/549 (20%), Positives = 209/549 (38%), Gaps = 48/549 (8%)

Query: 281 NQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HG 339
            +         L + S +    +      +     ++   L     +       ++   G
Sbjct: 248 GRRRILTSGSFLHDISGKYAGGVQVFADITERNLMEQSLRLHMHANNSSVESVSIFDIGG 307

Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399
           NL YANP+   L        +    G+                           +   + 
Sbjct: 308 NLTYANPAAEDLFGMDGSQLLG--LGIEQAYQ-------------------GGEMVLLSL 346

Query: 400 LHTIQWNRE---NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR-------INKRKMEI 449
           +    W  E   N   +              +       +    +         + + E 
Sbjct: 347 IRGKSWKGEVSQNGKILYIHANPIRLPKGNIIGFYVSARDITAHKATQLKLQQAREETER 406

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
           E  +L +I+   +  IA+++ EGII   N     + G   ED++ K             +
Sbjct: 407 EAAKLRAIISIMNAAIALVDAEGIITEINEQCLTITGKVREDLIGKKLESLHNGKILEKI 466

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK-KLPFSSCYSLTMHDISEWKQEK 568
              +           +   T+        + + I    +        L + D++E  + K
Sbjct: 467 QKMIANFRLNRNSSPV---TITRRVGGMDVIMNIQPVYRDKTYDGVLLMVVDVTEVAKAK 523

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
            +   A  +AEK S  KS+FLA +SHEIRTP+  I+GF+EV+  Q   P    +  E   
Sbjct: 524 RQAEQALLVAEKASKAKSEFLANMSHEIRTPMNGILGFAEVLIQQELSP----QQQESVK 579

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I + G  ++D++ND+LD+SKIESGK+ +     SL + + EA+++++    E+ + ++ 
Sbjct: 580 IIQQCGEQLMDLINDILDLSKIESGKLVMEETSFSLRKLIHEAVNVIESKFLEQNVEMKI 639

Query: 689 SFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT------SNEEVILRV 741
               N+  ++  D   ++Q+  N++SNA  FT  G  + IS             ++   +
Sbjct: 640 DIEQNLHDQLKGDPTRIRQVLYNLISNAAKFTHQG-YVKISVAEESISGADHQIKLRFCI 698

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            DTG+G+   +L+     F Q   S   +  GTGLGL + K++     G+  + S   KG
Sbjct: 699 EDTGIGIPKEKLKLIFDAFTQADGSTTRKYGGTGLGLTICKSLTQLMGGEINVESQVNKG 758

Query: 802 TLIEIIFPL 810
           ++     P+
Sbjct: 759 SIFSFYIPV 767



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 51/162 (31%), Gaps = 7/162 (4%)

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490
            G E    + +   RK+  E  +L +I E+ ++ + +++    I   N A +  F    E
Sbjct: 145 EGPESRLAELQSINRKLTNEKNKLWTIFESMTECVFVVDSNMKITEINAAAAAYFQVNPE 204

Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
           ++L    +  +         H    + S    + +E          ++L+       L  
Sbjct: 205 EVLGLNCSELMGCECREEDCHLFHAMKSGGCYKDVELEIKTQKGRRRILT---SGSFLHD 261

Query: 551 SSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
            S           DI+E    +  L              S F
Sbjct: 262 ISGKYAGGVQVFADITERNLMEQSLRLHMHANNSSVESVSIF 303



 Score = 74.7 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 35/365 (9%), Positives = 95/365 (26%), Gaps = 16/365 (4%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + +D++  + EI+            +++G+   ++      + + H+   +K    +  
Sbjct: 179 VFVVDSNMKITEINAAAAAYFQVNPEEVLGLNCSELMGCECREEDCHLFHAMKSGGCYKD 238

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
                  +       I  +   ++  + +++G  G  +       N      +      +
Sbjct: 239 VELEIKTQ--KGRRRILTSGSFLHDISGKYAG--GVQVFADITERNLMEQSLRLHMHANN 294

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
              E            Y   + +        +     + + Y   + VL +         
Sbjct: 295 SSVESVSIFDIGGNLTYANPAAEDLFGMDGSQLLGLGIEQAYQGGEMVLLSLIRGKSWKG 354

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
           E S   +  +   N  +  K    G   +    +    +           +         
Sbjct: 355 EVSQNGKILYIHANPIRLPKGNIIGFYVSARDITAHKATQLKLQQAREETEREAAKLRAI 414

Query: 326 VDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
           +         V + G +   N   L +T     D I     L +L +   L     +   
Sbjct: 415 ISIMNAAIALVDAEGIITEINEQCLTITGKVREDLIGKK--LESLHNGKILEKIQKMIAN 472

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
                + + +  +      +      + M   P  +            +  +  +    K
Sbjct: 473 FRLNRNSSPVTIT------RRVGGMDVIMNIQPVYRDK---TYDGVLLMVVDVTEVAKAK 523

Query: 445 RKMEI 449
           R+ E 
Sbjct: 524 RQAEQ 528


>gi|220909132|ref|YP_002484443.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7425]
 gi|219865743|gb|ACL46082.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7425]
          Length = 1255

 Score =  385 bits (990), Expect = e-104,   Method: Composition-based stats.
 Identities = 135/752 (17%), Positives = 274/752 (36%), Gaps = 52/752 (6%)

Query: 90   DAHGYLKEISEELPKTIGNYAFKMI-GM-RLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
            D  G + + ++     +G     +  G      ++    +  +      ++   +   + 
Sbjct: 519  DVDGTILDANQSFLNLVGYDREDLTSGRLNWRSLTPPEQLAASEDTLTAMQHCTSAILEK 578

Query: 148  TLWPIEGTNLYVPIDLAALPIYSRNREFSG--FRGFGIVHVNRVDNDPRALGKRLDKKFS 205
                 +G    VPI L  +        F+G   RG   V         +   ++ +++F 
Sbjct: 579  EYIHSDGH--RVPILLGGV-------RFAGSQTRGVSFVLDLSERKQTQQALQKANERFE 629

Query: 206  HLHEIKKGHSSVEKEKYDIFSQQSPPP-----HLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
                           + D   +           L      ++      H +D+ K ++  
Sbjct: 630  LAAAAVTSLIWEWDLQTDQVERSCGLVELTGYGLEEAEPTANWWLEKIHPEDLAKMDQAS 689

Query: 261  LLTSEE--SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
                         +        +    ++    +++        +      S    F+  
Sbjct: 690  FFQQLPVLDRYAGEYRIRHKEGHYVWVEERGLVVKDLQGNPIRIVGSTTDISDRKEFELA 749

Query: 319  ENLTPETVDK-----------CPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
               + ET+              P+   ++  +      N +   +        +E   G 
Sbjct: 750  LQASQETIRSQLLEIEAIYQTAPVGLGWLDQNLCFQRVNQALADINGV----ALEDHLGR 805

Query: 367  STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
            +     PKL+D        +  +    +       T          +    F   N   E
Sbjct: 806  TVREVIPKLADLAEPLLRQVLETGEPRLNVEIEGETAAAPGLRRTWLE-SWFPVRNSSAE 864

Query: 427  NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
                N +  E  + +  ++++     +   ++    DGI +I R GI +  N A  KL G
Sbjct: 865  VSGINLVVQEVTERKQAEQELRASEERYRQLVTICPDGI-LIQRGGIFMFANPAALKLLG 923

Query: 487  -YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
                E ++  P   F+ Q+   ++   L  +   +    +E+  L          +  + 
Sbjct: 924  AVTPEQVIGHPVLEFIHQDDHELVLERLHRLAEGEAVPPIEEKWLCLNGTIAHTEVAAVP 983

Query: 546  KKLPFSSCYSLTMHDISEWKQEKNKLS-------HAKKIAEKESSHKSDFLARVSHEIRT 598
                      + + DI+E KQ + +          A++ AE+ +  K +F+A VSHE+R+
Sbjct: 984  LLYQNQPAVQVVIRDITERKQLEQQRELLLVAAEVAREEAEQANRAKDEFIAVVSHELRS 1043

Query: 599  PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
            PL AI+G++++++ + F P            I+R+    + ++ DLLDIS++  G + L+
Sbjct: 1044 PLNAILGWAKLLQTRSFEP---AMLRRGLETIERNVETQVQLIEDLLDISRMVRGTLRLN 1100

Query: 659  FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718
            F PV+L   V E +  +Q     K++ +     +   R+  DL  ++QI  N+L+NAI F
Sbjct: 1101 FMPVNLVALVEETLLNLQPSITAKQLDLGYYPGSEEIRVAGDLHRLQQIFANLLTNAIKF 1160

Query: 719  TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
            TP+GGQ+ +        +V + V DTG G+    L      F Q  ++++ + EG GLGL
Sbjct: 1161 TPAGGQVEVRL-VNCGAQVQIMVIDTGKGIAADFLPYIFDRFRQGNDAREPQ-EGLGLGL 1218

Query: 779  PLAKAMVDANMGKFYIFST-PAKGTLIEIIFP 809
             + + +V+ + G     S  P +G    +  P
Sbjct: 1219 AIVRHLVELHKGTIQAASAGPGQGATFTVTLP 1250



 Score =  114 bits (286), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 60/534 (11%), Positives = 152/534 (28%), Gaps = 46/534 (8%)

Query: 74  FVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI 133
           F F P    V      DA G ++E +      +G+ A  +IG  L  +  +   +     
Sbjct: 380 FNFAPDAYLV-----SDAQGLIQEANRAACLLLGSGAETLIGTPL--LLYVAEAERRQFR 432

Query: 134 GDLLKRQNTW----YGKTTLWPIE-GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNR 188
             L +   +              + G      I ++A  I     +  GFR   ++    
Sbjct: 433 TQLYELNQSPVPQTQSFELHLRSDCGEPFPAAITVSA--ISDPQGKRIGFRW--LIRNIT 488

Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV----SSLT 244
                    ++ + +   L ++             I        +L   ++       L 
Sbjct: 489 ERKQAELALQQSEARLRQLVDLNLIGVMFWDVDGTILDANQSFLNLVGYDREDLTSGRLN 548

Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQE-DFHTINLNQYTKKQYFGTLQNNSKESFE-Y 302
                  + L   +  L   +  +    E ++   + ++            +        
Sbjct: 549 WRSLTPPEQLAASEDTLTAMQHCTSAILEKEYIHSDGHRVPILLGGVRFAGSQTRGVSFV 608

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIE 361
           L             +                + +         +   + LT Y   +   
Sbjct: 609 LDLSERKQTQQALQKANERFELAAAAVTSLIWEWDLQTDQVERSCGLVELTGYGLEEAEP 668

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
            A      +    L+  +              +   A  + I+    + + +        
Sbjct: 669 TANWWLEKIHPEDLAKMDQASFFQQL----PVLDRYAGEYRIRHKEGHYVWVEERGLVVK 724

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVM-------QLCSILEATSDGIAIINREGII 474
           +     +   G   +  D +  +  ++           ++ +I +    G+  +++    
Sbjct: 725 DLQGNPIRIVGSTTDISDRKEFELALQASQETIRSQLLEIEAIYQTAPVGLGWLDQNLCF 784

Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT---LEKIT-- 529
              N+A++ + G  +ED L +     +      +    L ++L     +    +E  T  
Sbjct: 785 QRVNQALADINGVALEDHLGRTVREVI-PKLADLAEPLLRQVLETGEPRLNVEIEGETAA 843

Query: 530 ---LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
              L  T  E    +R    ++   S  +L + +++E KQ + +L  +++   +
Sbjct: 844 APGLRRTWLESWFPVRNSSAEV---SGINLVVQEVTERKQAEQELRASEERYRQ 894



 Score =  110 bits (275), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 48/363 (13%), Positives = 110/363 (30%), Gaps = 17/363 (4%)

Query: 231 PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG 290
              + +  + S L +    +    +  +  L   ++      E    +N    T  +   
Sbjct: 290 ATQVGIALQQSELYQQARQELQERQQAETVLAALQQEHQHRAEQLEALNEELQTALEELQ 349

Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFL 349
             +   +   E L                    +  +  P  + V    G +  AN +  
Sbjct: 350 ITEEELRLQNEELFLSRQLQEEQQQRYQ-----DLFNFAPDAYLVSDAQGLIQEANRAAC 404

Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
           LL    +   I    G   LL   +         +            S  LH ++ +   
Sbjct: 405 LLLGSGAETLI----GTPLLLYVAEAERRQFRTQLYELNQSPVPQTQSFELH-LRSDCGE 459

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469
                      ++   + +    +     + +  +  ++    +L  +++    G+   +
Sbjct: 460 PFPAAITVSAISDPQGKRIGFRWLIRNITERKQAELALQQSEARLRQLVDLNLIGVMFWD 519

Query: 470 REGIILSTNRAVSKLFGYPVEDIL--RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
            +G IL  N++   L GY  ED+   R  +         +     LT +        LEK
Sbjct: 520 VDGTILDANQSFLNLVGYDREDLTSGRLNWRSLTPPEQLAASEDTLTAM-QHCTSAILEK 578

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH-DISEWKQEKNKLSHAKKIAEKESSHKS 586
             +    +   + + +   +   S    ++   D+SE KQ +  L  A +  E  ++  +
Sbjct: 579 EYI--HSDGHRVPILLGGVRFAGSQTRGVSFVLDLSERKQTQQALQKANERFELAAAAVT 636

Query: 587 DFL 589
             +
Sbjct: 637 SLI 639



 Score = 70.4 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 40/318 (12%), Positives = 91/318 (28%), Gaps = 23/318 (7%)

Query: 82   TVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN 141
             V   W +D +   + +++ L    G      +G  + +V   L       +  +L+   
Sbjct: 772  PVGLGW-LDQNLCFQRVNQALADINGVALEDHLGRTVREVIPKLADLAEPLLRQVLETGE 830

Query: 142  TWYGKTTLWPIEG--TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199
                                 ++ +  P+ + + E SG     +V             + 
Sbjct: 831  PRLNVEIEGETAAAPGLRRTWLE-SWFPVRNSSAEVSGIN--LVVQEVTERKQAEQELRA 887

Query: 200  LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP--PPHLRMKNKVS--SLTEYYAHKDDVLK 255
             ++++  L  I      +++    +F+  +           +V    + E+    D  L 
Sbjct: 888  SEERYRQLVTICPDGILIQRGGIFMFANPAALKLLGAVTPEQVIGHPVLEFIHQDDHELV 947

Query: 256  TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
             E+   L   E+  P +E +  +N            +    +            +     
Sbjct: 948  LERLHRLAEGEAVPPIEEKWLCLNGTI--AHTEVAAVPLLYQNQPAVQVVIRDITERKQL 1005

Query: 316  DEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
            ++   L         +     +      AN +        S +       L+ +L   KL
Sbjct: 1006 EQQRELL--------LVAAEVAREEAEQANRAKDEFIAVVSHEL---RSPLNAILGWAKL 1054

Query: 376  SDNNAIKPVMLYRSDRTC 393
                + +P ML R   T 
Sbjct: 1055 LQTRSFEPAMLRRGLETI 1072


>gi|218437127|ref|YP_002375456.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
 gi|218169855|gb|ACK68588.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
          Length = 1927

 Score =  385 bits (989), Expect = e-104,   Method: Composition-based stats.
 Identities = 119/748 (15%), Positives = 261/748 (34%), Gaps = 41/748 (5%)

Query: 86   TWNIDAHGYLKEISEELPKTIGNYAFKMIG--MRLCDVSDILHIDPNNH--IGDLLKRQN 141
             W+ +       +S    + +G    ++               +       +  L ++ +
Sbjct: 934  LWDWNPQNNELFLSSRWKEMLGYEDHEISSHLREWSSRVHPDDLQEVLRQVMDHLARKTD 993

Query: 142  TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
             +  +  +   +GT  Y         ++    +    R  G               KR  
Sbjct: 994  YYESEYRVRCKDGT--YKWTLDRGKAVWDETGKPI--RMVGSRRDITDAKQAAEELKRQK 1049

Query: 202  KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP-HLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
            +    + +       +     +I          L    +    T++       L+  +  
Sbjct: 1050 EVLQTIFDHIPVMIILFDPTGEIQLVNRALEKTLGWSLEEIQQTDFLVECYPDLQYRQKA 1109

Query: 261  LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
            +      +   Q+    +   +  +  +     ++  +              A   E ++
Sbjct: 1110 INHILYGNGQWQDFKTRVRDGRIIETTWANVELSDETKIGIGQDITIRKRAEAALQETQD 1169

Query: 321  LTPETVDKCPIPFFVYSH---GNLFYANPSFLLLTKYKSVDDIEIAG-GLSTLLDAPKLS 376
                 ++      +           +       +T Y   + I +    L  L    +  
Sbjct: 1170 RLEFILNNSGAALYTCKATPNLATTFITQGVETMTGYIPEEFIYVPSFWLDHLHPDDQ-- 1227

Query: 377  DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
              + +  V     +          +  Q +  N + +        +     +   G   +
Sbjct: 1228 -KSILTEVTQLFENG----FHTYEYRFQRSDGNYIWVQDRMQVIQDTQGNPIECIGYWFD 1282

Query: 437  DVDTRINKRKMEIEVMQLCSILEATSDGIAII----NREGIILSTNRAVSKLFGYPVEDI 492
                +  + ++     +L  I       +       + +      + AV  ++    E +
Sbjct: 1283 ITHRKRMEEEIRNSEQKLREITSLVPGMVFQFGITSDEKYFFSFASDAVLTIYELTPEQV 1342

Query: 493  L--RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
                +     ++    ++    L            E      + +EK + +  + +KLP 
Sbjct: 1343 KEDAQCILALIKPEQLALFQEALEVSRQNLTDFYFEHQITTPSGKEKWVRVSSVPQKLPD 1402

Query: 551  SSCYS-LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
             +        D++  KQ + +L  AK++A+  +  KS+FLA +SHEIRTP+ AI+GF ++
Sbjct: 1403 QTVIWNGVTIDLTVEKQREAELKQAKEVADLANRAKSEFLANMSHEIRTPMNAILGFCDL 1462

Query: 610  IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
            +       + + R   Y + I  +G  +L ++ND+LD+SKIE+GK+ L++EPV+L   + 
Sbjct: 1463 L----NHLVTDNRGQFYLSAIASAGKTLLALINDILDLSKIEAGKLQLYYEPVNLPTLIQ 1518

Query: 670  EAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
            E   +    A EK+I +     +++P  I+ D   ++QI  N++ NA+ FT  G  + IS
Sbjct: 1519 EIYQIFSQKAEEKQIKLLMEIDSSVPTGIIFDEVRLRQILFNVVGNALKFTEEG-YVKIS 1577

Query: 729  T--------THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
                         +  + + + DTG+G+   +  +    F Q       +  GTGLGL +
Sbjct: 1578 LNSYHSETQDQEDSITLKITIEDTGIGIAPEQQTQIFDAFIQSDGQNNRKYGGTGLGLAI 1637

Query: 781  AKAMVDANMGKFYIFSTPAKGTLIEIIF 808
             K +     GK  ++S P +G++    F
Sbjct: 1638 TKRLTTILGGKIELYSQPNQGSIFSFTF 1665



 Score =  119 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 44/409 (10%), Positives = 113/409 (27%), Gaps = 27/409 (6%)

Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS---PPPHLRMKNKVSSLTEYYAHK 250
           +A+ +  ++ F  + +       +       +             ++ ++ +      H 
Sbjct: 179 KAVLQESEQLFQTMADQAPVMIWISGTDTLCYYFNQVWLDYSGRTLEQEMGNGWAENVHP 238

Query: 251 DDVLKTEKYPLLTSE-ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS----H 305
           +D        L   E   S   +      +        +     ++  E   Y+      
Sbjct: 239 EDFQYCLDTYLKAFEKRESFQMEYRLRRWDEEYRWLLDHGTPRFSSEGEFLGYIGSCVDI 298

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-----GNLFYANPSFLLLTKYKSVDDI 360
            +         +        +D  PI  FV        G   + N +   L    + + +
Sbjct: 299 SDRKETEKKLQQTRKFLQTVLDYLPIAVFVRDGQKDHFGQYLFWNKTCEHLFGISAEEAL 358

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
                   L              ++   ++   I A       Q   +    +  +    
Sbjct: 359 GKT--RDELFPQEIPDFFRQKDRILFENNNIENIPAEIVES--QKLGQRI--LHTVKLPL 412

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNR 479
            ++  +     G   +  D        E E   L  +LEA+ + I + N +       N 
Sbjct: 413 YDETHQPKYILGFSEDITDRIKA----ETERTYLGQLLEASLNEIYVFNAQTLKFQYVNP 468

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
           +  +  GY  E + +          T +     +  +      + +   T     +  + 
Sbjct: 469 SALENLGYSWEQMQQMTPLDLKRTFTLTTFKQLILPLKEHQQERLI-FETYHYRSDGSVY 527

Query: 540 SLRIIIKKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
            + + ++ +       +   + DI+E +Q +  L  A +  E     ++
Sbjct: 528 PVEVHLQLMERPEGNVFLAVILDITERQQAQLALQQAYEQLEIRVQERT 576



 Score =  107 bits (268), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 37/290 (12%), Positives = 94/290 (32%), Gaps = 15/290 (5%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY-ANPSFLLLTKYKSVDDIEIAGGLS 367
             + A   E E L     D+ P+  ++     L Y  N  +L  +  ++++     G   
Sbjct: 176 RPIKAVLQESEQLFQTMADQAPVMIWISGTDTLCYYFNQVWLDYSG-RTLEQEMGNGWAE 234

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
            +         +        ++     +        +W+ E    +      + +   E 
Sbjct: 235 NVHPEDFQYCLD-----TYLKAFEKRESFQMEYRLRRWD-EEYRWLLDHGTPRFSSEGEF 288

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE----GIILSTNRAVSK 483
           +   G   +  D +  ++K++     L ++L+     + + + +    G  L  N+    
Sbjct: 289 LGYIGSCVDISDRKETEKKLQQTRKFLQTVLDYLPIAVFVRDGQKDHFGQYLFWNKTCEH 348

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           LFG   E+ L K       Q  P         +   +  + +    + S K  + +   +
Sbjct: 349 LFGISAEEALGKTRDELFPQEIPDFFRQKDRILFENNNIENIPAEIVESQKLGQRILHTV 408

Query: 544 II---KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
            +    +            DI++  + + + ++  ++ E   +    F A
Sbjct: 409 KLPLYDETHQPKYILGFSEDITDRIKAETERTYLGQLLEASLNEIYVFNA 458



 Score = 91.2 bits (225), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 39/321 (12%), Positives = 87/321 (27%), Gaps = 47/321 (14%)

Query: 299  SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNL--FYANPSFLLLTKYKS 356
            +   ++            E E    +  +     F++         Y +P+F  +    S
Sbjct: 740  AARAVTELERQQAEQNLRESEEKFRQLAENIKEIFYIQDAQTFQTIYVSPTFSEIWGI-S 798

Query: 357  VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
             D +     L    +     D   ++  +    +        R   I         +   
Sbjct: 799  WDTLYQNPHLWM--ENIYPPDRAIVRANLQANRNEQEFNYEYR---IIRPDGQLRWIWAR 853

Query: 417  PFEKANQFPENMPQNGIEPEDVDTRINKRKM-----------EIEVMQLCSILEA----- 460
             F   +         GI  +  + +  +  +           E   +QL  I+E      
Sbjct: 854  NFPVKDSSGNIYRIAGIAEDITERKQTQEALKTLNQNLENLVEERTVQLQQIIEQHQQTE 913

Query: 461  ----------------TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
                            T+DG+   N +   L  +    ++ GY   +I       +  + 
Sbjct: 914  EALRKSEERWQLAIYGTNDGLWDWNPQNNELFLSSRWKEMLGYEDHEIS-SHLREWSSRV 972

Query: 505  TPSVMNHYLTEILSL--DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTM 558
             P  +   L +++          E       K+          K +   +        + 
Sbjct: 973  HPDDLQEVLRQVMDHLARKTDYYESEYRVRCKDGTYKWTLDRGKAVWDETGKPIRMVGSR 1032

Query: 559  HDISEWKQEKNKLSHAKKIAE 579
             DI++ KQ   +L   K++ +
Sbjct: 1033 RDITDAKQAAEELKRQKEVLQ 1053



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 53/436 (12%), Positives = 120/436 (27%), Gaps = 39/436 (8%)

Query: 69  DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID 128
           +SE  F        V   W           ++      G    + +G    +        
Sbjct: 184 ESEQLFQTMADQAPV-MIWISGTDTLCYYFNQVWLDYSGRTLEQEMGNGWAENVHPEDFQ 242

Query: 129 P-NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187
              +      +++ ++  +  L   +    Y  +     P +S   EF G+ G  +    
Sbjct: 243 YCLDTYLKAFEKRESFQMEYRLRRWDEE--YRWLLDHGTPRFSSEGEFLGYIGSCV--DI 298

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ-------SPPPHLRMKNKV 240
               +     ++  K    + +       V   + D F Q             +  +  +
Sbjct: 299 SDRKETEKKLQQTRKFLQTVLDYLPIAVFVRDGQKDHFGQYLFWNKTCEHLFGISAEEAL 358

Query: 241 SSLTEYYAH---KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297
               +        D   + ++     +   ++P  E   +  L Q         L + + 
Sbjct: 359 GKTRDELFPQEIPDFFRQKDRILFENNNIENIPA-EIVESQKLGQRILHTVKLPLYDETH 417

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNL--FYANPSFLLLTKYK 355
           +    L      +     +       + ++      +V++   L   Y NPS L    Y 
Sbjct: 418 QPKYILGFSEDITDRIKAETERTYLGQLLEASLNEIYVFNAQTLKFQYVNPSALENLGYS 477

Query: 356 -------SVDDIEIAGGLST----LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
                  +  D++    L+T    +L   +      I     YRSD +       L  ++
Sbjct: 478 WEQMQQMTPLDLKRTFTLTTFKQLILPLKEHQQERLIFETYHYRSDGSVYPVEVHLQLME 537

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK------RKMEIE---VMQLC 455
               N      +   +  Q    + Q   + E              + +  E     ++ 
Sbjct: 538 RPEGNVFLAVILDITERQQAQLALQQAYEQLEIRVQERTAQLEQINQLLRQEVNDRHRIE 597

Query: 456 SILEATSDGIAIINRE 471
           + L   + G+   N +
Sbjct: 598 TALCNIALGVTTTNSQ 613



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/164 (10%), Positives = 52/164 (31%), Gaps = 10/164 (6%)

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYP 488
                  +++ +  ++ +     +   + E   +   I + +    +  +   S+++G  
Sbjct: 739 FAARAVTELERQQAEQNLRESEEKFRQLAENIKEIFYIQDAQTFQTIYVSPTFSEIWGIS 798

Query: 489 VEDILRKPFTVF--LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
            + + + P      +     +++   L    +    Q           + +L  +     
Sbjct: 799 WDTLYQNPHLWMENIYPPDRAIVRANLQ---ANRNEQEFNYEYRIIRPDGQLRWIWARNF 855

Query: 547 KLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
            +  SS      +    DI+E KQ +  L    +  E     ++
Sbjct: 856 PVKDSSGNIYRIAGIAEDITERKQTQEALKTLNQNLENLVEERT 899


>gi|330508230|ref|YP_004384658.1| two-component hybrid sensor and regulator [Methanosaeta concilii
           GP-6]
 gi|328929038|gb|AEB68840.1| two-component hybrid sensor and regulator [Methanosaeta concilii
           GP-6]
          Length = 998

 Score =  385 bits (989), Expect = e-104,   Method: Composition-based stats.
 Identities = 112/530 (21%), Positives = 218/530 (41%), Gaps = 30/530 (5%)

Query: 291 TLQNNSKESFEYLSHRNHPSLSA--YFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPS 347
            L+ +  E  E ++ R      A    +   +     ++    P F +     L   N +
Sbjct: 212 ELRRSKMELEERVAWRTKELELANSALERSRDYLDMIINSISDPIFVINREHRLVLVNAA 271

Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
           F  L      D +     +     + +++D++  +   ++ S R  +      ++     
Sbjct: 272 FCRLMSLPKEDLLGEE--VHDFCFSREMADDHWQRNEEVFNSRRETVVEEIHSYS---PG 326

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
             +  +        +   +     GI  +  D +  + ++  +      +LE   + +  
Sbjct: 327 APATVL-IKRIPIIDSDGK-WLIVGIIRDITDIKKAQERIRFQAD----LLEQVHNTVIA 380

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL--DLRQTL 525
            + EG I+  N++   L G+  E+ + K     +           +  ++S     R   
Sbjct: 381 TDLEGNIIYWNKSAETLLGWKSEEAMGKNIAETVVPEW---GLDKMNRVISDLIKDRGNW 437

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKE 581
           +       K+   +        +               D++E K  +  L  AK+ AE+ 
Sbjct: 438 DGEFYFKKKDGSTVPFHQCFSSIRDGRGELIGLVGVAVDLTERKHIEEALKKAKREAEEA 497

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
           +  KSDFLA +SHEIRTP+ AIIG + ++  +   P       +    I+ +G+ +L ++
Sbjct: 498 ARVKSDFLANMSHEIRTPMNAIIGMTSLLLEEPLTP----EQRDCIEVIETNGDALLTVI 553

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILAD 700
           ND+LD SK+E+ K  L     ++ + V +++ LV + A  K + +  S   ++P  I+ D
Sbjct: 554 NDILDFSKMENNKTVLEECQFAIAQCVEDSLDLVGINAANKGLNLAYSIDKSVPEMIVGD 613

Query: 701 LRSVKQIALNILSNAIHFTPSGGQI-IISTTHTSNEEVI-LRVRDTGVGMTNYELEKAMK 758
              +KQ+  N+LSNA+ FT  G  +  +S      + VI   VRDTG+G+    ++    
Sbjct: 614 PSKLKQVLGNLLSNAVKFTDKGEVVVTVSAQEVDGDNVIQFEVRDTGIGIPQNRMKLLFL 673

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           PF Q+  S      GTGLGL ++K +V+   G+ +  S+   G+      
Sbjct: 674 PFSQMEPSTSRLYGGTGLGLAISKRLVEMMKGRIWAESSEGTGSSFHFTI 723



 Score = 88.5 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 45/343 (13%), Positives = 100/343 (29%), Gaps = 43/343 (12%)

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
           P ++     +             ++           +     SA  D  EN      D  
Sbjct: 42  PLRQAKAVFDSLLANDSANAQNNESPLGLQPHLKDEKPKSFQSAEQDPEENTMAPASDNR 101

Query: 330 PIPFF---VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
           P+PF    + S     + N S+       S + +     +S +L            P++ 
Sbjct: 102 PLPFMLVHISSDQRYLFVNQSYANWLGLDSSEMVGR--HISDILPEEIYQ---TYLPLIQ 156

Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
                              + +           + ++    +    +  +  D ++N  +
Sbjct: 157 RVLSGE----EVISCITFPSGDRLKYQDITLIPQLDESGSTIAYFAVIKDITDHKLNDDE 212

Query: 447 MEIEVMQLCS-------------------------ILEATSDGIAIINREGIILSTNRAV 481
           +    M+L                           I+ + SD I +INRE  ++  N A 
Sbjct: 213 LRRSKMELEERVAWRTKELELANSALERSRDYLDMIINSISDPIFVINREHRLVLVNAAF 272

Query: 482 SKLFGYPVEDILRKPFT-VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
            +L   P ED+L +        +           E+ +      +E+  + S       +
Sbjct: 273 CRLMSLPKEDLLGEEVHDFCFSREMADDHWQRNEEVFNSRRETVVEE--IHSYSPGAPAT 330

Query: 541 LRIIIKKLPFSSC---YSLTMHDISEWKQEKNKLSHAKKIAEK 580
           + I    +  S         + DI++ K+ + ++     + E+
Sbjct: 331 VLIKRIPIIDSDGKWLIVGIIRDITDIKKAQERIRFQADLLEQ 373



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 51/484 (10%), Positives = 127/484 (26%), Gaps = 61/484 (12%)

Query: 8   SNPEDILTSNCKGNTQDLSKKKIDNGFETEKSKKEN---PCHDSF---EQSNFTDQNQES 61
           SN E+IL    +      +K   D+    + +  +N   P        ++   + Q+ E 
Sbjct: 33  SNSEEILYDPLRQ-----AKAVFDSLLANDSANAQNNESPLGLQPHLKDEKPKSFQSAEQ 87

Query: 62  VSNTNYLDSENTFVFDPIPRTVRFTW-NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCD 120
               N +   +        R + F   +I +      +++     +G  + +M+G  + D
Sbjct: 88  DPEENTMAPASD------NRPLPFMLVHISSDQRYLFVNQSYANWLGLDSSEMVGRHISD 141

Query: 121 VSDIL-HIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFR 179
           +     +      I  +L  +         +P      Y  I L  +P    +     + 
Sbjct: 142 ILPEEIYQTYLPLIQRVLSGEEVIS--CITFPSGDRLKYQDITL--IPQLDESGSTIAY- 196

Query: 180 GFGIVHVNRVDNDPRALGK-------------------------RLDKKFSHLHEIKKGH 214
            F ++             +                         R       +       
Sbjct: 197 -FAVIKDITDHKLNDDELRRSKMELEERVAWRTKELELANSALERSRDYLDMIINSISDP 255

Query: 215 SSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQED 274
             V   ++ +    +    L    K   L E         +        +EE     +E 
Sbjct: 256 IFVINREHRLVLVNAAFCRLMSLPKEDLLGEEVHDFCFSREMADDHWQRNEEVFNSRRET 315

Query: 275 FHTINLNQYTKKQYFGTLQN----NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330
                 +          ++     +S   +  +      +      E      + +++  
Sbjct: 316 VVEEIHSYSPGAPATVLIKRIPIIDSDGKWLIVGIIRDITDIKKAQERIRFQADLLEQVH 375

Query: 331 IPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389
                    GN+ Y N S   L  +KS + +      +     P+   +   + +     
Sbjct: 376 NTVIATDLEGNIIYWNKSAETLLGWKSEEAMGKNIAET---VVPEWGLDKMNRVISDLIK 432

Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449
           DR                 +++          +   E +   G+  +  + +  +  ++ 
Sbjct: 433 DRGNWDGEFYFK---KKDGSTVPFHQCFSSIRDGRGELIGLVGVAVDLTERKHIEEALKK 489

Query: 450 EVMQ 453
              +
Sbjct: 490 AKRE 493



 Score = 65.0 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 21/142 (14%), Positives = 43/142 (30%), Gaps = 6/142 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH-IDP-NNHIGDLLKRQNTWYGK 146
            D  G +   ++     +G  + + +G  + +       +D  N  I DL+K +  W G+
Sbjct: 381 TDLEGNIIYWNKSAETLLGWKSEEAMGKNIAETVVPEWGLDKMNRVISDLIKDRGNWDGE 440

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                 +G+   VP       I     E  G  G  +              K+  ++   
Sbjct: 441 FYFKKKDGST--VPFHQCFSSIRDGRGELIGLVGVAV--DLTERKHIEEALKKAKREAEE 496

Query: 207 LHEIKKGHSSVEKEKYDIFSQQ 228
              +K    +    +       
Sbjct: 497 AARVKSDFLANMSHEIRTPMNA 518



 Score = 60.0 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/234 (9%), Positives = 70/234 (29%), Gaps = 26/234 (11%)

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA- 460
            ++  +    ++       A      +       ++        + + E   +    +  
Sbjct: 42  PLRQAKAVFDSLLANDSANAQNNESPLGLQPHLKDEKPKSFQSAEQDPEENTMAPASDNR 101

Query: 461 -TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL 519
                +  I+ +   L  N++ +   G    +++ +  +  L +         +  +LS 
Sbjct: 102 PLPFMLVHISSDQRYLFVNQSYANWLGLDSSEMVGRHISDILPEEIYQTYLPLIQRVLSG 161

Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579
           +   +      G   + + ++L   + +   +  Y   + DI++ K   ++L  +K   E
Sbjct: 162 EEVISCITFPSGDRLKYQDITLIPQLDESGSTIAYFAVIKDITDHKLNDDELRRSKMELE 221

Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
           +  + ++  L                                R  +Y + I  S
Sbjct: 222 ERVAWRTKEL------------------------ELANSALERSRDYLDMIINS 251



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/248 (9%), Positives = 68/248 (27%), Gaps = 14/248 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCD--VSDILHIDPNNHIGDLLKRQNTW 143
            + I+    L  ++    + +      ++G  + D   S  +  D      ++   +   
Sbjct: 256 IFVINREHRLVLVNAAFCRLMSLPKEDLLGEEVHDFCFSREMADDHWQRNEEVFNSRRET 315

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +       G      + +  +PI   + +   +   GI+         +   +     
Sbjct: 316 VVEEIHSYSPG--APATVLIKRIPIIDSDGK---WLIVGIIRDITDIKKAQERIRFQADL 370

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS----SLTEYYAHKDDVLKTEKY 259
              +H       + + E   I+  +S    L  K++ +                      
Sbjct: 371 LEQVHNT---VIATDLEGNIIYWNKSAETLLGWKSEEAMGKNIAETVVPEWGLDKMNRVI 427

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
             L  +  +   +  F   + +     Q F ++++   E    +      +   + +E  
Sbjct: 428 SDLIKDRGNWDGEFYFKKKDGSTVPFHQCFSSIRDGRGELIGLVGVAVDLTERKHIEEAL 487

Query: 320 NLTPETVD 327
                  +
Sbjct: 488 KKAKREAE 495


>gi|172038636|ref|YP_001805137.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
           51142]
 gi|171700090|gb|ACB53071.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
           51142]
          Length = 1082

 Score =  385 bits (989), Expect = e-104,   Method: Composition-based stats.
 Identities = 134/768 (17%), Positives = 268/768 (34%), Gaps = 65/768 (8%)

Query: 98  ISEELPKTIGNYAFKMIGM--RLCDVSDILHIDPNNHIG--DLLKRQNTWYGKTTLWPIE 153
            S    + +G    ++         +      +    I      ++ + +  +  L   +
Sbjct: 68  FSPRWKEMLGYGEQELPNHIDTWKQLLHPQDRERVMKILGDHFARKTDHYSAEFRLKCQD 127

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH---EI 210
           G   Y  I      ++         R  G         + + L   L      L    + 
Sbjct: 128 GN--YKWILSRGKALWDATGTPV--RMAGSHTDISDRKNEQILLTSLIDCIPDLVFCKDS 183

Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL-TSEESSL 269
           K  +            +       +   ++    E    ++             +EE   
Sbjct: 184 KGVYKMCNNAFETFAGRDRKDIIGKSDFELFPPEEALGFREQDRFMMLQKQSHRNEEWIT 243

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
               +   ++  +       G L      S +    +          E + L      + 
Sbjct: 244 YPNGNRRLVDTLKTPFCCPEGKLMGTIGISRDITDRKQKEEAIKQQAERDALLSNIARQL 303

Query: 330 -------PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
                   + F + S G     + S+++    +      +    +    +      N   
Sbjct: 304 IDQDLTTAVNFILASLGKFTKCDRSYIIRYFPEEKAWSMLHEWCNEYTPSTIHDSQNISL 363

Query: 383 PVM--------------LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK-------- 420
            V               + R D     A+A     Q +   +L +  +            
Sbjct: 364 EVFPWFSQQLIEGKSICINRLDDFPPEATAEQEAYQNSLSPNLLVVPMMTGGQTVGYLGI 423

Query: 421 ---------ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471
                                +        I +   +    +   IL+  ++ I  I+ +
Sbjct: 424 DTNRYKKWKKEDVNLLKLVGELMAIAEARAIAEEAQKESQARFAGILDNANEAIISIDEQ 483

Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL---TEILSLDLRQTLEKI 528
             I   N A  ++FGY  E++L + F + +          ++           +    + 
Sbjct: 484 QNITLFNHAAEEIFGYTSEEVLGRAFNLLIPSRFTDAHYQHIKTFQHTAETARQMGGRRP 543

Query: 529 TLGSTKEEKLL--SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
             G  K+       + I   KL   + ++  + DI+E KQ +  L  AK+ A+  +  KS
Sbjct: 544 VFGQRKDGTEFLAEVSISKIKLRGKTIFTAIIRDITERKQAEEALKQAKEQADAANRAKS 603

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
           +FLA +SHE+RTPL AI+GF++V++           + +  + I RSG  +L+++ND+L+
Sbjct: 604 EFLASMSHELRTPLNAILGFTQVMQRDHSLKG---EHRQNLDIIGRSGEHLLELINDILE 660

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVK 705
           ++KIE+G+   +     L   +    S++ L A EK + +      ++P+ I  D   ++
Sbjct: 661 MTKIEAGRTTFNQTQFDLYRLLDNLESMLHLKAEEKNLQLLFEKNPDLPQYIETDEGKLR 720

Query: 706 QIALNILSNAIHFTPSGGQI-IISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPF 760
           Q+ +N+L NAI FT  GG I  I T H++++     +   + DTG G+   E+ +  + F
Sbjct: 721 QVLINLLGNAIKFTQEGGVILRIKTNHSTDQNPTIILTFEIEDTGPGIAAEEVNQLFEAF 780

Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           GQ    +    EGTGLGLP+++  V+   G+  + S   +G+L     
Sbjct: 781 GQTETGRNSN-EGTGLGLPISRKFVELMGGEITVSSILGRGSLFTFTI 827



 Score = 91.6 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 33/285 (11%), Positives = 75/285 (26%), Gaps = 22/285 (7%)

Query: 315 FDEGENLTPETVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
             E E      V       + ++      + +P +  +  Y   +          LL   
Sbjct: 38  LRESEERWQLVVQGTNEGIWDWNLKTDEMFFSPRWKEMLGYGEQELPNHIDTWKQLLHPQ 97

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
                  I      R      A       ++    N   +        +     +   G 
Sbjct: 98  DRERVMKILGDHFARKTDHYSA----EFRLKCQDGNYKWILSRGKALWDATGTPVRMAGS 153

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
             +  D +  +         L S+++   D +   + +G+    N A     G   +DI+
Sbjct: 154 HTDISDRKNEQI-------LLTSLIDCIPDLVFCKDSKGVYKMCNNAFETFAGRDRKDII 206

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS- 552
            K                    ++        E+         +L+         P    
Sbjct: 207 GKSDFELFPPEEALGFREQDRFMMLQKQSHRNEEWITYPNGNRRLVDTLKTPFCCPEGKL 266

Query: 553 -CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
                   DI++ KQ++         A K+ + +   L+ ++ ++
Sbjct: 267 MGTIGISRDITDRKQKEE--------AIKQQAERDALLSNIARQL 303



 Score = 58.1 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 23/250 (9%), Positives = 65/250 (26%), Gaps = 25/250 (10%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN----------NHIGDLLK 138
           ID    +   +    +  G  + +++G     +      D +                + 
Sbjct: 480 IDEQQNITLFNHAAEEIFGYTSEEVLGRAFNLLIPSRFTDAHYQHIKTFQHTAETARQMG 539

Query: 139 RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
            +   +G+      +GT     + ++ + +  +           I+             K
Sbjct: 540 GRRPVFGQ----RKDGTEFLAEVSISKIKLRGKT------IFTAIIRDITERKQAEEALK 589

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
           +  ++    +  K    +    +       +     ++  +  SL   +    D++    
Sbjct: 590 QAKEQADAANRAKSEFLASMSHELRT-PLNAILGFTQVMQRDHSLKGEHRQNLDIIGRSG 648

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
             LL      + +  +   I   + T  Q    L          L  +          E 
Sbjct: 649 EHLL----ELINDILEMTKIEAGRTTFNQTQFDLYRLLDNLESMLHLKAEEKNLQLLFEK 704

Query: 319 ENLTPETVDK 328
               P+ ++ 
Sbjct: 705 NPDLPQYIET 714



 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/158 (10%), Positives = 48/158 (30%), Gaps = 7/158 (4%)

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
                        ++ +       +  +     +   +++ T++GI   N +   +  + 
Sbjct: 11  DRLIQELQAEIIRLKADQKVALTMQETLRESEERWQLVVQGTNEGIWDWNLKTDEMFFSP 70

Query: 480 AVSKLFGYPVEDILRK--PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
              ++ GY  +++      +   L       +   L +  +               ++  
Sbjct: 71  RWKEMLGYGEQELPNHIDTWKQLLHPQDRERVMKILGDHFARKTDH-YSAEFRLKCQDGN 129

Query: 538 LLSLRIIIKKLPFSSCYSLTM----HDISEWKQEKNKL 571
              +    K L  ++   + M     DIS+ K E+  L
Sbjct: 130 YKWILSRGKALWDATGTPVRMAGSHTDISDRKNEQILL 167


>gi|307151259|ref|YP_003886643.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306981487|gb|ADN13368.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 1067

 Score =  385 bits (989), Expect = e-104,   Method: Composition-based stats.
 Identities = 137/779 (17%), Positives = 274/779 (35%), Gaps = 82/779 (10%)

Query: 96  KEISEELPKTIGNYAFKMIGM--RLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIE 153
             +S    + +G    ++         +     ++    + ++L     + GKT  + +E
Sbjct: 66  LFLSPRWKEMLGYQDDELENHFKTWRKLLHPKDVE---RVMEVLH--EHFEGKTAYYVVE 120

Query: 154 GTNL-----YVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                    Y  I      ++    +    R  G           ++L + L      L 
Sbjct: 121 FRLQCKDGSYKWILSRGQALWDATGKPV--RMAGSHTDISDRKARQSLLRSLIDCIPDLI 178

Query: 209 ---EIKKGHSSVEKEKYDIFSQQSPPPHLRMK-NKVSSLTEYYAHKDDVLKTEKYPLLTS 264
              + +  +    +   +   ++      +   +  S       H  D L  ++     +
Sbjct: 179 FYKDAQGIYRVCNRAFAEFLGRKDKEILGKSDFDLFSRKIASQIHHYDTLLMQQNNSHRN 238

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT-- 322
           EE    +  +   ++          G +      S +    +          + ++L   
Sbjct: 239 EEWVAYKNGNRRLLDTFTTPVLGSDGEVLGIIGISRDITDRKQKEQALEQQAKRDHLLSC 298

Query: 323 --PETVDK-CPIPF--FVYSHGN---------LFYANPSFLLLTKYK--------SVDDI 360
                +D+         + + G          + +++        Y+         V ++
Sbjct: 299 ISRPLIDQDLNTAINFILQALGECTGSEHAYIIRFSDCQASWSMSYEWCNPHNPKIVSEL 358

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW-------------NR 407
           E     S            + K V + R       A+A    +                 
Sbjct: 359 EKCQNQSVDTFPWFTKQLLSGKTVKINRLQDLPSEATAEKEALLKSLTPCVLIVPMINAG 418

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPE----DVDTRINKRKMEIEVMQLCSILEATSD 463
           +    +            E++    +  E           +  +E    +   IL+  ++
Sbjct: 419 KTVGYLGLDAGSHKTWTKEDVHLLKLIGEFIAIAESRHEAQAALEESQARFAGILDNANE 478

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL---TEILSLD 520
            I  I+    I   N A  K FGY  ++++ + F + L  +   +   Y+    +     
Sbjct: 479 AIISIDENQQITLFNHAAEKTFGYQAQEVIGQSFNLLLPSDYGEIHQQYINTFAKASQTA 538

Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS--LTMHDISEWKQEKNKLSHAKKIA 578
            +        G  ++       + I KL           + DI+E KQ +  L  AK+ A
Sbjct: 539 KQMGGRNPVFGRRQDGTAFLAEVSISKLVQRGKILFTAIVRDITERKQAEEALKQAKEAA 598

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
           +  +  KS+FLA +SHE+RTPL AI+GF++V+                   I RSG  +L
Sbjct: 599 DNANRAKSEFLASMSHELRTPLNAILGFTQVLARN---SALKEEEKTNLEIISRSGEHLL 655

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-I 697
           D++ND+L++SKIE+G+   +     L   +     +++L A  K + +    A+++P+ I
Sbjct: 656 DLINDILEMSKIEAGRTTFNQSSFDLYRLLDSLEDMLRLRAEAKGLQLIFDSASDVPQYI 715

Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV----------ILRVRDTGVG 747
             D   ++Q+ +N++ NAI FT  GG   ++    S  +V             V DTG G
Sbjct: 716 QTDEGKLRQVLINLIGNAIKFTDEGG---VTLRVKSGGKVPLESPKMATITFEVEDTGPG 772

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           +   E++   + FGQ    ++   +GTGLGLP++K  V+   G+  + S P  G+L   
Sbjct: 773 IALDEIDNLFEAFGQTETGRKSN-QGTGLGLPISKKFVELMGGEIRVSSVPGNGSLFAF 830



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 46/145 (31%), Gaps = 13/145 (8%)

Query: 440 TRINKRKME------IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI- 492
            +  +R +E          +   +L   +DGI   N +   L  +    ++ GY  +++ 
Sbjct: 25  RQEQQRSLEIQEKFTESEERWQLVLRGNNDGIWDWNLKTNELFLSPRWKEMLGYQDDELE 84

Query: 493 -LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
              K +   L       +   L E                  K+     +    + L  +
Sbjct: 85  NHFKTWRKLLHPKDVERVMEVLHEHFE-GKTAYYVVEFRLQCKDGSYKWILSRGQALWDA 143

Query: 552 SC----YSLTMHDISEWKQEKNKLS 572
           +      + +  DIS+ K  ++ L 
Sbjct: 144 TGKPVRMAGSHTDISDRKARQSLLR 168



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 40/124 (32%), Gaps = 5/124 (4%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL-KRQNTW 143
             +  DA G  +  +    + +G    +++G    D+         +H   LL ++ N+ 
Sbjct: 177 LIFYKDAQGIYRVCNRAFAEFLGRKDKEILGKSDFDLFSRKIASQIHHYDTLLMQQNNSH 236

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +  +    G      +D    P+   + E  G    GI              ++  K+
Sbjct: 237 RNEEWVAYKNGN--RRLLDTFTTPVLGSDGEVLGI--IGISRDITDRKQKEQALEQQAKR 292

Query: 204 FSHL 207
              L
Sbjct: 293 DHLL 296



 Score = 48.9 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/249 (12%), Positives = 69/249 (27%), Gaps = 27/249 (10%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH----------IDPNNHIGDLLK 138
           ID +  +   +    KT G  A ++IG     +    +              +     + 
Sbjct: 483 IDENQQITLFNHAAEKTFGYQAQEVIGQSFNLLLPSDYGEIHQQYINTFAKASQTAKQMG 542

Query: 139 RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF-GIVHVNRVDNDPRALG 197
            +N  +G       +GT     + ++ L          G   F  IV             
Sbjct: 543 GRNPVFG----RRQDGTAFLAEVSISKLVQR-------GKILFTAIVRDITERKQAEEAL 591

Query: 198 KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257
           K+  +   + +  K    +    +       +     ++  + S+L E      +++   
Sbjct: 592 KQAKEAADNANRAKSEFLASMSHELRT-PLNAILGFTQVLARNSALKEEEKTNLEIISRS 650

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
              LL      + +  +   I   + T  Q    L        + L  R          +
Sbjct: 651 GEHLLD----LINDILEMSKIEAGRTTFNQSSFDLYRLLDSLEDMLRLRAEAKGLQLIFD 706

Query: 318 GENLTPETV 326
             +  P+ +
Sbjct: 707 SASDVPQYI 715


>gi|298248593|ref|ZP_06972398.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297551252|gb|EFH85118.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 983

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 105/739 (14%), Positives = 231/739 (31%), Gaps = 41/739 (5%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144
             W +   GY+   ++      G    +  G                    + +   T +
Sbjct: 267 LVWTMRPDGYIDYYNQRWLDYTGLSTEQAQGDGWIQCLHPDDQQRIRDAWQMSRETGTPF 326

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
                     T  Y      A+P+     +    + FG               K   +  
Sbjct: 327 ETEQRLRHGTTGAYHWFLARAMPMRDETGQII--KWFGTCTDIEEQKQAEQQLKESQESL 384

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQS-------PPPHLRMKNKVSSLTEYYAHKDDVLKTE 257
             L E       V +                          + + L   +       +  
Sbjct: 385 RVLAETVPQMVWVARPNGLHEYTNQRWQDYTGSTLEHMQNGRWAHLQFIHPEDRQRHRAH 444

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
               L +      E+   +               +++++ +  ++             + 
Sbjct: 445 WQHALDTGTMFEHEERIRNGQTGEYRWFLARGMPVRDDAGQIVKWFGTSTDIDEQKQAER 504

Query: 318 GENLTPE----TVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
               + E      +  P   +V    G   Y N  +   T    +D I+    +      
Sbjct: 505 QLKESRESLRVLAETVPQLVWVKRPDGQHEYTNQRWRDYTGLT-LDQIQSDRWVHLQFIH 563

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
           P+  + +        R+  T                             N+  + +   G
Sbjct: 564 PEDQEGHR---ASFQRALDTGAMFEYEQRLRHAQTGEYRWFLTRAMPMRNEAGQIIKWFG 620

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
              +  D +  +  +     +   ++ +   GI + +    I+  N    ++ GY  ED+
Sbjct: 621 TNTDIEDQKRIEEALRQSQERASVLMNSNIIGIFV-DEGEQIVDANDTFLRMTGYTREDL 679

Query: 493 L--RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
              R  +         +       E+ +       EK  +        + +   + +   
Sbjct: 680 HAGRLNWMHMTPPEYLAQTRQAHQELAAQQSLTPYEKEYVCQDGSRLNVLVCGDVLQHHP 739

Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
               +  + D S  K+ + +              K DF++  SHE++TPLT +   ++ +
Sbjct: 740 FQGIAFVL-DNSAPKELEQR--------------KDDFISMASHELKTPLTTLKMQTQ-L 783

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
             +R     +       + ++     +  +V +LLD+SKI++G++    E V+LD  + E
Sbjct: 784 VRKRLERQAHHEAATALSKVEGPVKQLERLVGELLDVSKIQAGRLEYIRETVNLDALLHE 843

Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
               +Q  +    I++R         ++ D   + QI  N+LSNAI ++P    + +   
Sbjct: 844 VADTMQQISTTHTIVVR---GATSCTLVGDKDRLGQIFTNLLSNAIKYSPGAETVEMDLE 900

Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
            + +  V +RV+D G+G+   + +K  + F ++   +Q    G G+GL +   +V  + G
Sbjct: 901 ASEDA-VTIRVQDHGLGIPREQRDKIFERFYRVAGPRQRAIPGLGMGLYIVAEIVMGHGG 959

Query: 791 KFYIFSTPAKGTLIEIIFP 809
              + S   KG+   +  P
Sbjct: 960 TITVDSAVGKGSTFMVTLP 978



 Score =  139 bits (351), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 49/515 (9%), Positives = 132/515 (25%), Gaps = 30/515 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWY 144
            + +D    +   +       G    +++G  L   +  L        +    + +    
Sbjct: 29  LFVVDDAATIVYANASAQTLTGATREELLGKPLWRGAPQLGSTSLYQAVQQATQTREP-T 87

Query: 145 GKTTLWPIEGTNLYVPI--DLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
                 P+    L V +   +  L + +     +  R   +    R+  D       LD 
Sbjct: 88  NVEYRSPVTQRWLRVQLAPTVGGLMVQAHQGRVAARREAPVPQDERLSIDD------LDG 141

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
             S +  +      +E  +  +   Q     + +   ++    +  +     +       
Sbjct: 142 LLSRIGVLTPKGIVLEINEDPLAHAQIRREEV-IGQPLAEARWWSFYPASQEQLRAAIAR 200

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
            S   ++  +   H                ++  +     +      +     +      
Sbjct: 201 ASRGETVRFETVIHPREGLDRHLDVAITPHRDADRHIAYLVLAGIDITERKRAEAE---L 257

Query: 323 PETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
              +D  P   +     G + Y N  +L  T   +    +  G +  L    +       
Sbjct: 258 HALIDTIPQLVWTMRPDGYIDYYNQRWLDYTGLSTEQA-QGDGWIQCLHPDDQ---QRIR 313

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
               + R   T      RL                     ++  + +   G   +  + +
Sbjct: 314 DAWQMSRETGTPFETEQRLR--HGTTGAYHWFLARAMPMRDETGQIIKWFGTCTDIEEQK 371

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF- 500
             +++++     L  + E     + +    G+   TN+      G  +E +    +    
Sbjct: 372 QAEQQLKESQESLRVLAETVPQMVWVARPNGLHEYTNQRWQDYTGSTLEHMQNGRWAHLQ 431

Query: 501 -LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE-EKLLSLRIIIKKLPFSSC----Y 554
            +          +    L        E        +  +          +   +     +
Sbjct: 432 FIHPEDRQRHRAHWQHALDTGT--MFEHEERIRNGQTGEYRWFLARGMPVRDDAGQIVKW 489

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
             T  DI E KQ + +L  +++     +      +
Sbjct: 490 FGTSTDIDEQKQAERQLKESRESLRVLAETVPQLV 524



 Score =  105 bits (261), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 38/407 (9%), Positives = 98/407 (24%), Gaps = 20/407 (4%)

Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA 248
                R L     +    + E   G   V  +   I    +    L    +   L +   
Sbjct: 3   DTPQIRRLTPASSETLLTILETLPGALFVVDDAATIVYANASAQTLTGATREELLGKPLW 62

Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFH-TINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
                L +        + +   E  +      + Q   +              +    R 
Sbjct: 63  RGAPQLGSTSLYQAVQQATQTREPTNVEYRSPVTQRWLRVQLAPTVG--GLMVQAHQGRV 120

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
                A   + E L+ + +D        +   G +   N   L   + +  + I      
Sbjct: 121 AARREAPVPQDERLSIDDLDGLLSRIGVLTPKGIVLEINEDPLAHAQIRREEVIGQPL-A 179

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
                +   +    ++  +   S    +     +H  +    +   +        +    
Sbjct: 180 EARWWSFYPASQEQLRAAIARASRGETVRFETVIHPREGLDRH---LDVAITPHRDADRH 236

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
                    +  + +  + +       L ++++     +  +  +G I   N+      G
Sbjct: 237 IAYLVLAGIDITERKRAEAE-------LHALIDTIPQLVWTMRPDGYIDYYNQRWLDYTG 289

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
              E      +   L  +    +                E+     T             
Sbjct: 290 LSTEQAQGDGWIQCLHPDDQQRIRDAWQMSRETGTPFETEQRLRHGT-TGAYHWFLARAM 348

Query: 547 KLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
            +   +     +  T  DI E KQ + +L  +++     +      +
Sbjct: 349 PMRDETGQIIKWFGTCTDIEEQKQAEQQLKESQESLRVLAETVPQMV 395



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 38/274 (13%), Positives = 77/274 (28%), Gaps = 22/274 (8%)

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIA 363
             + P +              ++  P   F V     + YAN S   LT     + +   
Sbjct: 1   MSDTPQIRRLTPASSETLLTILETLPGALFVVDDAATIVYANASAQTLTGATREELLGKP 60

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
                    P+L   +  + V      R       R    Q        +          
Sbjct: 61  LWRGA----PQLGSTSLYQAVQQATQTREPTNVEYRSPVTQR------WLRVQLAPTVGG 110

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
                 Q  +            ++ I+       L+     I ++  +GI+L  N     
Sbjct: 111 LMVQAHQGRVAARREAPVPQDERLSIDD------LDGLLSRIGVLTPKGIVLEINEDPLA 164

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR-QTLEKITLGSTKEEKLLSLR 542
                 E+++ +P       +        L   ++   R +T+   T+   +E     L 
Sbjct: 165 HAQIRREEVIGQPLAEARWWSFYPASQEQLRAAIARASRGETVRFETVIHPREGLDRHLD 224

Query: 543 IIIKKLPFSSCYSLTMH----DISEWKQEKNKLS 572
           + I     +  +   +     DI+E K+ + +L 
Sbjct: 225 VAITPHRDADRHIAYLVLAGIDITERKRAEAELH 258


>gi|298530758|ref|ZP_07018160.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira
            thiodismutans ASO3-1]
 gi|298510132|gb|EFI34036.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira
            thiodismutans ASO3-1]
          Length = 1186

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 120/770 (15%), Positives = 250/770 (32%), Gaps = 71/770 (9%)

Query: 90   DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
            D  G + + +E   +  G    ++I +    +     +       + +KR  + + +   
Sbjct: 292  DLEGNILDANESALEMFGYTREELIRLHPSSLVHPEEVQQVREEFEDIKRNQSRFSEHRC 351

Query: 150  WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
               +G  + V           R R  S     G++     +       +  ++    + E
Sbjct: 352  LRSDGREIMVIT---------RGRLVSENMIQGVLRDVTRERQQEKALRESEEYIRTIME 402

Query: 210  IKKGHSS---VEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
            +         ++    D+        +   +  +         ++   +  +        
Sbjct: 403  VLPDIVIKTNLQGVCLDVLGDFQAKLYRPKEEVLGRYIPDVVPEEVGTRFMQGVNNALTT 462

Query: 267  SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
              L   E    I+   +  +     L      +       N     A  +E E+   +  
Sbjct: 463  GDLQMVEYELEIDSRTFYFESRIMPLNEEEVIALIRDITENR-RALAALEESESRYRQLF 521

Query: 327  DKCPIPFFVYSHG-----------------------------------NLFYANPSFLLL 351
             + P    V                                        +   N + L  
Sbjct: 522  QESPASMLVEDFSQVQKRLGEIKNQADGELDSFLKENPQFVQEMAELVRIVDVNQTALKQ 581

Query: 352  TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411
                S+++     G++T+           +  +              RL  +        
Sbjct: 582  FHAASLEEFTR--GIATVFARDSWQ--EFMGELAAVFHGEKSFFTEKRLQNL---NGEIR 634

Query: 412  AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471
             +            +         +    +  +  +  + M L  +L+   D +++   +
Sbjct: 635  NVQLKWSVMPGCEQDFSRVLVCIVDITGLKSIEEDLRHKNMLLNGVLDNMPDFMSVKLPD 694

Query: 472  GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
              ++  NR   +L G    ++  K     + Q  P      L  +         +     
Sbjct: 695  LTVVRYNRTGYELLGMDENEVQGKKCYELMNQEFPCQPCATLDALKRGGQA---DHELYF 751

Query: 532  STKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
               E +  S R                 + DI++ K+ + +L  A + AE  +  KS+FL
Sbjct: 752  PQFE-RYFSCRANPILNEEGRVEYVVELLRDITQRKESEAELQMAWEKAEAANKAKSEFL 810

Query: 590  ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
            A +SHEIRTP+  I+G  ++++        +    +       S   +  ++ D+LD+S+
Sbjct: 811  ANMSHEIRTPINGIMGGLQLLEATSL----DHEQKQLVEMGIASARRLTRLLTDILDLSR 866

Query: 650  IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIA 708
            IE+GKM +      +D   +    L    A EK + I  +    +P IL  D   ++QI 
Sbjct: 867  IEAGKMEIRKADFEVDRLCTSIEDLFAASAAEKNVRISCTLDPRLPPILAGDDARIQQIL 926

Query: 709  LNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIP 764
            LN++ NA+ FT     + +       +     V++ V D+G+G+++ +L +   PF Q  
Sbjct: 927  LNLVGNALKFTHDD-TVELHWHLLRRQGNELRVLISVADSGLGISDEKLGEIFNPFVQAD 985

Query: 765  NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
             +     EG GLGL +   +V    G   + STP +G+   +  PL   S
Sbjct: 986  GAFTRNFEGAGLGLSIVVRLVQMMGGNISVESTPGEGSTFYVSLPLEAGS 1035



 Score =  144 bits (363), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 63/514 (12%), Positives = 145/514 (28%), Gaps = 42/514 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMI-----GMRLCDVSDILHIDPNNHIGDLLKRQNTW 143
           +D  G L   +  L + +G    + I     G      +D         +  +L+  N  
Sbjct: 34  VDPGGMLLSANPALAQILGYSDPQDILDKTGGTAWQSFADARDWQG---LYRMLEADNEV 90

Query: 144 YG-KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
              +  L   +   L+V I   A  I          RGF  V             +R ++
Sbjct: 91  ANFECRLLCRDNNPLWVSITAGA--IRDDTGRLMYIRGF--VTDISERKLAENALRRSEE 146

Query: 203 KFSHLHEIKKGHSSVEKEKYD------IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256
           ++  L E          E         +           +++ +++    +    +    
Sbjct: 147 RYRMLSESTNDFIFSCVEGQTGHNLEWLAGAVEKITGYSVEDILANQCWSFLVHPEDRYL 206

Query: 257 EKYPLLTSEESSLPE-QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS----L 311
            +  +   E     E +      +      +        + + S +        +     
Sbjct: 207 FREHITECEPGQTKECELRILRRDGQTCWLQVASSCFLEDERGSKKVYGACRDITGKKTA 266

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
                E E       +K     F++   GN+  AN S L +  Y   + I +       L
Sbjct: 267 EKALQESEFRYRNLFEKSTEGVFLHDLEGNILDANESALEMFGYTREELIRLHPSS---L 323

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
             P+       +   + R+        +    ++ +    + +T        +       
Sbjct: 324 VHPEEVQQVREEFEDIKRNQSRF----SEHRCLRSDGREIMVIT------RGRLVSENMI 373

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490
            G+  +    R  ++ +      + +I+E   D +   N +G+ L            P E
Sbjct: 374 QGVLRDVTRERQQEKALRESEEYIRTIMEVLPDIVIKTNLQGVCLDVLGDFQAKLYRPKE 433

Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
           ++L +     + +   +     +   L+    Q +E        + +       I  L  
Sbjct: 434 EVLGRYIPDVVPEEVGTRFMQGVNNALTTGDLQMVEYELEI---DSRTFYFESRIMPLNE 490

Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
                  + DI+E ++    L  ++    +    
Sbjct: 491 EE-VIALIRDITENRRALAALEESESRYRQLFQE 523



 Score = 71.6 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 56/138 (40%), Gaps = 6/138 (4%)

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYP-VEDILRKPFTVFLEQNTPSVMNHYLTE 515
           I  +   GI  ++  G++LS N A++++ GY   +DIL K      +    +     L  
Sbjct: 23  IFMSAPIGILTVDPGGMLLSANPALAQILGYSDPQDILDKTGGTAWQSFADARDWQGLYR 82

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH----DISEWKQEKNKL 571
           +L  D  +          ++   L + I    +   +   + +     DISE K  +N L
Sbjct: 83  MLEADN-EVANFECRLLCRDNNPLWVSITAGAIRDDTGRLMYIRGFVTDISERKLAENAL 141

Query: 572 SHAKKIAEKESSHKSDFL 589
             +++     S   +DF+
Sbjct: 142 RRSEERYRMLSESTNDFI 159


>gi|307152388|ref|YP_003887772.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306982616|gb|ADN14497.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 1308

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 131/772 (16%), Positives = 261/772 (33%), Gaps = 77/772 (9%)

Query: 96   KEISEELPKTIGNYAFKMIG--MRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPI 152
              +S +  + +        G      ++      D  +N +   L + + W     +   
Sbjct: 317  VILSPQGERLLNLKPGSFPGTYEAFVNLLHGDDFDALSNSLQVALLKASGWQMDHKILDP 376

Query: 153  EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND-------------------- 192
             G+  +  I      +Y +  E    +  GI+                            
Sbjct: 377  NGS--WRWITSLGKFLYDKTGEPV--QMIGIIKDITHRKQTEFNLQKLNETLEKRVTRRT 432

Query: 193  --------------------PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP- 231
                                  AL K   +    L        SV+ ++  I   Q    
Sbjct: 433  AALKTINNQLKQQLLKCELIEEALKKSQARLSGILKIASDAIVSVDHQQKIILFNQEAEK 492

Query: 232  -PHLRMKNKVSSLTEYYAHKDDVLKTEKY----PLLTSEESSLPEQEDFHTINLNQYTKK 286
                 +K  +         +   LK  ++        + +  + ++ +      +     
Sbjct: 493  VFGYSVKEVLGKPLSLLLPEKFQLKHHQWVNNFAQSGTLKRPMGKRLEIWGRRQDASEFP 552

Query: 287  QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYAN 345
                  +                S      E  N     ++            G     N
Sbjct: 553  AEASISRLEIGGEIILTVILQDISERKQAQEQLNQINCALENAVEGISRLDTQGRYLMVN 612

Query: 346  PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405
             ++  L  Y+  + I        +   P   D   +    +     T     A +  ++ 
Sbjct: 613  KAYAALLGYQPQEIIGKE---WQITIHPSEQDKMKLAYQTML----TQGKVEAEVKGVRK 665

Query: 406  NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465
            +               +Q  + +       +  + +     ++        +      G 
Sbjct: 666  DGSVFYKQ-VTMISAYDQQKQFIGHYCFAKDITERKQADEILKKYAQDFTDLYNHAPCGY 724

Query: 466  AIINREGIILSTNRAVSKLFGYPVEDILRK-PFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
              ++  G+++  N       GY  E +L K  F   L   +  V +            + 
Sbjct: 725  HSLDENGLLVQINDTELNWLGYTREQLLGKVKFYELLTPESREVFSQNFERFKQRGWVKA 784

Query: 525  LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH----DISEWKQEKNKLSHAKKIAEK 580
            LE   L       ++ + +    +  S    L       DI++ KQ + +L  A+K A  
Sbjct: 785  LEFELL--RANGTVMPVMLNATAVKDSQGNYLISRSTIFDITKRKQAELELQKAQKEAIA 842

Query: 581  ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
             +  KS FLA +SHE+RTPL AI+GF++++          P ++E    I+RSG  +L +
Sbjct: 843  ANRAKSIFLANMSHELRTPLNAILGFTQLLGRDHC---LRPEHLERLQIINRSGEHLLGL 899

Query: 641  VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILA 699
            ++D+LD+SKIE+GK+        L   +     ++Q  A  + + +    + ++P+ I  
Sbjct: 900  IDDILDLSKIETGKIAAFLTGFDLYHLLVTVEEMLQPKAKTRGLRLIIEKSFDLPQYIKT 959

Query: 700  DLRSVKQIALNILSNAIHFTPSGGQI-IISTTHTSN--EEVILRVRDTGVGMTNYELEKA 756
            D + ++Q+ +N+L+NAI FT  G  I  +      N  + ++  V DTGVGM   ++++ 
Sbjct: 960  DEKKLRQVLINLLNNAIKFTQEGTVILRVKPKAAENTPQRLVFEVEDTGVGMAPDDIDQL 1019

Query: 757  MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
             K F Q    +++  +GTGLGL +++  V    G+  + ST  KG++     
Sbjct: 1020 FKVFVQAEAGKKLN-QGTGLGLAISQKFVQLMGGEIEVKSTLGKGSVFSFEI 1070



 Score = 78.1 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 29/312 (9%), Positives = 77/312 (24%), Gaps = 21/312 (6%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
            +D  G    +++     +G    ++IG            D        +  Q     + 
Sbjct: 601 RLDTQGRYLMVNKAYAALLGYQPQEIIGKEWQITIHPSEQDKMKLAYQTMLTQGKVEAEV 660

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                +G+  Y  + +  +  Y + ++F G   F              + K+  + F+ L
Sbjct: 661 KGVRKDGSVFYKQVTM--ISAYDQQKQFIGHYCFA--KDITERKQADEILKKYAQDFTDL 716

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
           +           E   +               +  +  +  Y     +  +         
Sbjct: 717 YNHAPCGYHSLDENGLLVQINDTELNWLGYTREQLLGKVKFYELLTPESREVFSQNFERF 776

Query: 265 EESSL--PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
           ++       + +    N            ++++        S     +     +      
Sbjct: 777 KQRGWVKALEFELLRANGTVMPVMLNATAVKDSQGNYLISRSTIFDITKRKQAELELQKA 836

Query: 323 PETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
            +               ++F AN S  L T       +    G + LL          ++
Sbjct: 837 QK------EAIAANRAKSIFLANMSHELRTP------LNAILGFTQLLGRDHCLRPEHLE 884

Query: 383 PVMLYRSDRTCI 394
            + +       +
Sbjct: 885 RLQIINRSGEHL 896



 Score = 65.0 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 38/442 (8%), Positives = 112/442 (25%), Gaps = 52/442 (11%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI-LHIDPNNHIGDLLKRQNTWYGKT 147
           +D    +   ++E  K  G    +++G  L  +      +  +  + +  +         
Sbjct: 477 VDHQQKIILFNQEAEKVFGYSVKEVLGKPLSLLLPEKFQLKHHQWVNNFAQSGTLKRPMG 536

Query: 148 TLWPIEGTNL---YVPIDLAALPIYSRNREFSGFRGFGIV-HVNRVDNDPRALGKRLDKK 203
               I G        P + +   +     E  G     ++          +     L++ 
Sbjct: 537 KRLEIWGRRQDASEFPAEASISRL-----EIGGEIILTVILQDISERKQAQEQ---LNQI 588

Query: 204 FSHLHEIKKGHSSVEKEK-YDIFSQQSPPPHLRMKNKVSSLTEYY-AHKDDVLKTEKYPL 261
              L    +G S ++ +  Y + ++           ++         H  +  K +    
Sbjct: 589 NCALENAVEGISRLDTQGRYLMVNKAYAALLGYQPQEIIGKEWQITIHPSEQDKMKLAYQ 648

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
               +  +  +      + + + K+    +  +  K+   +       +     DE    
Sbjct: 649 TMLTQGKVEAEVKGVRKDGSVFYKQVTMISAYDQQKQFIGHYCFAKDITERKQADEILKK 708

Query: 322 TP----ETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
                 +  +  P  +  +  +G L   N + L    Y     +        L    +  
Sbjct: 709 YAQDFTDLYNHAPCGYHSLDENGLLVQINDTELNWLGYTREQLLGKVKFYELLTPESREV 768

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
            +   +               A    +       + +        +     +       +
Sbjct: 769 FSQNFERFKQR------GWVKALEFELLRANGTVMPVMLNATAVKDSQGNYLISRSTIFD 822

Query: 437 DVDTRINKRKMEIEV------------------MQLCSILEATSDGIAIINREG------ 472
               +  + +++                      +L + L A      ++ R+       
Sbjct: 823 ITKRKQAELELQKAQKEAIAANRAKSIFLANMSHELRTPLNAILGFTQLLGRDHCLRPEH 882

Query: 473 --IILSTNRAVSKLFGYPVEDI 492
              +   NR+   L G   + +
Sbjct: 883 LERLQIINRSGEHLLGLIDDIL 904



 Score = 48.5 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/215 (12%), Positives = 65/215 (30%), Gaps = 19/215 (8%)

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILR- 494
           + D  + ++ +     Q    +EA + G    +   G ++  +    +L           
Sbjct: 279 ESDRTLVQKALNQSQQQFQQAVEAANLGTWHWDVVTGKVIL-SPQGERLLNLKPGSFPGT 337

Query: 495 -KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553
            + F   L  +    +++ L   L       ++   L          +  + K L   + 
Sbjct: 338 YEAFVNLLHGDDFDALSNSLQVALLKASGWQMDHKIL--DPNGSWRWITSLGKFLYDKTG 395

Query: 554 ----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                   + DI+  KQ +  L    +  EK  + ++  L  ++++++  L         
Sbjct: 396 EPVQMIGIIKDITHRKQTEFNLQKLNETLEKRVTRRTAALKTINNQLKQQL-----LKCE 450

Query: 610 IKNQRFGPLGNPRYIEYANYIDR---SGNLVLDIV 641
           +  +        R             S +    I+
Sbjct: 451 LIEEAL-KKSQARLSGILKIASDAIVSVDHQQKII 484


>gi|283779193|ref|YP_003369948.1| PAS/PAC sensor hybrid histidine kinase [Pirellula staleyi DSM 6068]
 gi|283437646|gb|ADB16088.1| PAS/PAC sensor hybrid histidine kinase [Pirellula staleyi DSM 6068]
          Length = 827

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 117/582 (20%), Positives = 232/582 (39%), Gaps = 34/582 (5%)

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL--QNNSKESFEYLSHRNHPSLSA 313
             +   +     +    E        Q   +         N       + +         
Sbjct: 96  AAQVREVAKAHRAEFTHEYPCNSPTEQRWFRLRAAPYIWNNRRVVVIAHDNITPQKMAEM 155

Query: 314 YFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
              + E      ++        +  HG +   NP+   +  Y   + +     +S+L+ +
Sbjct: 156 QARKNELALRAVLESAVDSIISIDEHGIITSYNPAAERMFGYGPKELLGCN--VSSLMPS 213

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
           P    ++      L       I         + +                 +       G
Sbjct: 214 PDRERHDGYLRRYLATGIPRIIGFGREATGQRKDGSTF---PIDLSVGEVLYEGRRAFTG 270

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVED 491
           I  +  + +  +  +   + Q  ++L A S+  I   +  G+I + NR   ++ GY  ++
Sbjct: 271 IVRDISERKATEHALATSLKQREALLSAASEVSIIATDMHGVITTFNRGAEQMLGYSADE 330

Query: 492 ILR--KPFTVFLEQNTPSVMNHYLTEI-----------LSLDLRQTLEKITLGSTKEEKL 538
           ++    P  V L     +       E+              +      +      ++   
Sbjct: 331 MVGVASPAVVHLHSEVLARSRELTKELGYPVEGFRTFVELAERDGFEHREWTYIRRDGSQ 390

Query: 539 LSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
           L + +++  +         Y     D++EWKQ + +L  AK  AE  +  KS+FLA +SH
Sbjct: 391 LLVNLVVTCVRDIDGQVIGYLGVAVDVTEWKQSERELKLAKIAAEAANHAKSEFLANMSH 450

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           E+RTP+TAI+GF +++         NP+ I+ A  I R+G  ++ ++ND+LD+SKIE+G+
Sbjct: 451 ELRTPMTAILGFVDIVAENVS---SNPQLIDAAATIKRNGEHLMGLLNDILDLSKIEAGR 507

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILS 713
           + +     ++    ++ I L+++ ++ K + +   F   IP  I  D   ++QI +N++ 
Sbjct: 508 LEVQKHSCNVRALTADVIQLMRVRSDAKGLELSIEFQGAIPETIETDSTRLRQILINLIG 567

Query: 714 NAIHFTPSGG-QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           NAI FT +G  QI++         +   +RDTG+G+T  ++ K  +PF Q+  S   +  
Sbjct: 568 NAIKFTENGRVQILVRLERRGTPMLEFEIRDTGIGITPEQMTKLFRPFTQVDTSLTRKFG 627

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF---PLY 811
           GTGLGL ++K + +   G   + S   +G+   +     PL 
Sbjct: 628 GTGLGLTISKRLAEILGGTITVSSKAGEGSSFLLRIAAGPLA 669



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 25/269 (9%), Positives = 66/269 (24%), Gaps = 31/269 (11%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNT----W 143
           ID HG +   +    +  G    +++G  +  +      +  + ++   L         +
Sbjct: 178 IDEHGIITSYNPAAERMFGYGPKELLGCNVSSLMPSPDRERHDGYLRRYLATGIPRIIGF 237

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             + T    +G+   + + +    +Y   R F+G     IV                 K+
Sbjct: 238 GREATGQRKDGSTFPIDLSV-GEVLYEGRRAFTG-----IVRDISERKATEHALATSLKQ 291

Query: 204 FSHLHEIKKGHSSVEKEKYDIFS----QQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
              L       S +  + + + +                 V   +    H    +     
Sbjct: 292 REALLSAASEVSIIATDMHGVITTFNRGAEQMLGYSADEMVGVASPAVVHLHSEVLARSR 351

Query: 260 PLL----------------TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303
            L                    +     +  +   + +Q         +++   +   YL
Sbjct: 352 ELTKELGYPVEGFRTFVELAERDGFEHREWTYIRRDGSQLLVNLVVTCVRDIDGQVIGYL 411

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIP 332
                 +     +    L     +     
Sbjct: 412 GVAVDVTEWKQSERELKLAKIAAEAANHA 440



 Score = 48.9 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/154 (15%), Positives = 52/154 (33%), Gaps = 12/154 (7%)

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
            +  +  R +E  +  + S+L+A S  IA+I+ +G++L  N+A  K            P 
Sbjct: 14  TEPSVVTRALEASLSTVDSLLDALSMHIAVIDSQGVVLGVNQAWRKFGRENGIRATFNPV 73

Query: 498 TVFLEQNTPSV----------MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
                +               +   + E+      +   +    S  E++   LR     
Sbjct: 74  GSNYFEICQCAASSGAYEAADVAAQVREVAKAHRAEFTHEYPCNSPTEQRWFRLRAAPY- 132

Query: 548 LPFSSCYSLTMHD-ISEWKQEKNKLSHAKKIAEK 580
           +  +    +  HD I+  K  + +    +     
Sbjct: 133 IWNNRRVVVIAHDNITPQKMAEMQARKNELALRA 166


>gi|168701075|ref|ZP_02733352.1| multi-sensor hybrid histidine kinase [Gemmata obscuriglobus UQM
           2246]
          Length = 1034

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 114/587 (19%), Positives = 213/587 (36%), Gaps = 20/587 (3%)

Query: 231 PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG 290
            P + +      L               + L         +  +                
Sbjct: 43  FPAVLIAAYYGGLGPGLLATAIGAFIANFALTPPHFELSIKSINAAVALPMFLLVGAMMS 102

Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFL 349
            L  +   +   L        +    + E       +     F+     G   Y +P++ 
Sbjct: 103 ALCESLHRTRLRLVAEERARAATAVKDAEARFLHLAENIRDIFWALDPVGRPVYVSPAYE 162

Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
            +      +    A G       P        +   + R  RT      R   I      
Sbjct: 163 EVWGRSREELYRSAAGAWLDTVHPDDRSGATEQFDHVRRGARTD-----REFRIVRPDGA 217

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469
              +    F   ++        G+  +  + +  +  +     +     E  + GIA  +
Sbjct: 218 VRWVRLRSFPLGDEAGREPRVAGLCEDITERKRAEGNLRESEERFRGTFENAAVGIAHCD 277

Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ-TLEKI 528
            EG  L  N+    +  YP E+++   F      +  +        ++  ++R  +LEK 
Sbjct: 278 PEGRFLRVNQKHCDILRYPREELIGLDFRAVTHPDDRTGSGTQFERLMRGEVRSYSLEKR 337

Query: 529 TLGSTKEEKLLSLRIIIKKLPFSSCY--SLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
            +      K   + +  ++ P          + DISE K+ + +L  AK+ AE  +  K 
Sbjct: 338 HVCKDGAVKWTVVTVSAQRDPVQGTLHSIGVVEDISERKRLEGELLVAKEAAEAANRAKD 397

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
           +FLA VSHE+RTP+ AI+G +E++              +    +  + + +L I+NDLLD
Sbjct: 398 EFLANVSHELRTPMNAILGMTELVLETEL----REDQRQCLATVKSAADNLLGILNDLLD 453

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVK 705
            +KIE+GK+ L     SL   V + +  +   A+   + +       +P  ++ D   ++
Sbjct: 454 FAKIEAGKLELDPTEFSLRAVVGDTLRALAARAHRAGLELVGDVHPAVPDALVGDPGRLR 513

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTS-----NEEVILRVRDTGVGMTNYELEKAMKPF 760
           Q+  N++ NAI FTP+G ++++              V   VRDTG+G+   +L++    F
Sbjct: 514 QVLFNLIGNAIKFTPAG-EVVVGVEPADPSDIGGSAVRFTVRDTGIGIKPEKLDRIFHAF 572

Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
            Q   S   R  GTGLGL ++  +V    G   + S P +G+     
Sbjct: 573 EQEDTSTTRRYGGTGLGLTISGRLVALMGGAIGVESEPGRGSTFAFT 619



 Score = 73.5 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/254 (9%), Positives = 60/254 (23%), Gaps = 12/254 (4%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGM---RLCDVSDILHIDPNNHIGDLLKRQNTW 143
           W +D  G    +S    +  G    ++         D              D ++R    
Sbjct: 146 WALDPVGRPVYVSPAYEEVWGRSREELYRSAAGAWLDTVHPDDRSGATEQFDHVRRGART 205

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +  +   +G      + L + P+          R  G+              +  +++
Sbjct: 206 DREFRIVRPDG--AVRWVRLRSFPLGDEAGREP--RVAGLCEDITERKRAEGNLRESEER 261

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSSLT-EYYAHKDDVLKTEKY- 259
           F    E      +    +                 + ++  L      H DD   +    
Sbjct: 262 FRGTFENAAVGIAHCDPEGRFLRVNQKHCDILRYPREELIGLDFRAVTHPDDRTGSGTQF 321

Query: 260 -PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
             L+  E  S   ++     +             ++  + +   +      S     +  
Sbjct: 322 ERLMRGEVRSYSLEKRHVCKDGAVKWTVVTVSAQRDPVQGTLHSIGVVEDISERKRLEGE 381

Query: 319 ENLTPETVDKCPIP 332
             +  E  +     
Sbjct: 382 LLVAKEAAEAANRA 395



 Score = 60.0 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/337 (10%), Positives = 85/337 (25%), Gaps = 20/337 (5%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ--NTWYGKT 147
           D  G    ++++    +     ++IG+    V+       +    + L R    ++  + 
Sbjct: 277 DPEGRFLRVNQKHCDILRYPREELIGLDFRAVTHPDDRTGSGTQFERLMRGEVRSYSLEK 336

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                +G   +  + ++A     R+         G+V                 +     
Sbjct: 337 RHVCKDGAVKWTVVTVSAQ----RDPVQGTLHSIGVVEDISERKRLEGELLVAKEAAEAA 392

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
           +  K    +    +         P +  +      L                    +   
Sbjct: 393 NRAKDEFLANVSHELRT------PMNAILGMTELVLETELREDQRQCLATVKSAADNLLG 446

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
            L +  DF  I   +        +L+    ++   L+ R H +      +     P+ + 
Sbjct: 447 ILNDLLDFAKIEAGKLELDPTEFSLRAVVGDTLRALAARAHRAGLELVGDVHPAVPDALV 506

Query: 328 KCPIP---FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
             P           GN     P+  ++   +  D  +I G                 K  
Sbjct: 507 GDPGRLRQVLFNLIGNAIKFTPAGEVVVGVEPADPSDIGGSAVRFTVRDTGIGIKPEKLD 566

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
            ++ +            T +      L +T      A
Sbjct: 567 RIFHAFEQE-----DTSTTRRYGGTGLGLTISGRLVA 598


>gi|222054922|ref|YP_002537284.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           FRC-32]
 gi|221564211|gb|ACM20183.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           FRC-32]
          Length = 756

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 99/741 (13%), Positives = 236/741 (31%), Gaps = 44/741 (5%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           DA G +  ++++  +  G  A + +G  L  +         +    +L R + W+G+   
Sbjct: 36  DADGMVDFVNDKFTEITGYEAGETVGRSLWSLQCQETPTCTDLEKFVLTRGD-WHGEMVN 94

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
              +G   +  + +A   +  R+   SG+    +              K  + + S    
Sbjct: 95  RRKDGAPYWESVSIAV--VRDRDGAISGY--VAVKQDVSEGKQTEERLKAREAELSEAQR 150

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY-----AHKDDVLKTEKYPLLTS 264
           I +  S     + D              ++  +   +Y         + L      +  +
Sbjct: 151 IARVGSWTWDAESDTVYWSEQTYRTCGFDQSVAPPSFYGGHGKLFPPEDLARLTQCIDLA 210

Query: 265 EESSLPEQEDFHTI-NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
                P Q D   +               ++               +     +E      
Sbjct: 211 LRDGTPYQLDLQMLCPDTPRWITVRGEATRDAEGRIKGLRGSIQDITERKRAEEEIQCQR 270

Query: 324 ETVD----KCPIPFFVY--SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
             ++      P    +       +   NP++  L              +           
Sbjct: 271 RLLESVIMNLPAAVLIAVGHDLRIKMINPAYSRLAP--------GKEIIGKTFPEVWPEI 322

Query: 378 NNAIKPVMLYRSDRTCIAA-SARLHTIQWNRE--NSLAMTFIPFEKANQFPENMPQNGIE 434
                  +                H  ++          ++  F       E        
Sbjct: 323 PALRDVFLKVLETGEPYEVVDEPYHISRFPGGLLEKRYFSWSLFRVRLPGNEEWGLLNTA 382

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDIL 493
            E  + + ++  + +   +  S  E  + G+  +   +   +  N A  ++ GY  + + 
Sbjct: 383 WETTERKRSEDALRVSEEKFRSFFEHAAVGMGRVRFTDACWIDVNGAFCRMLGYSPDAMK 442

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553
             P+          +       +   +L  T         K+   +  R+ +  +  +  
Sbjct: 443 ATPWPQITHPEDVDMDLIPFRRMAVGELD-TYSVEKRFIHKDGHHVWARLALSLVRNAEG 501

Query: 554 Y----SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                   + DI++ K+ + +        ++ +     F    SH+++ PL  I  +  +
Sbjct: 502 LPDYEIAVIEDITDRKRSEAERERLLSEVQRSNQELQQFAYIASHDLQEPLRMISSYISL 561

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           ++ +  G L + + I Y +Y+      +  ++  LL+ S+I          PV  +E+ S
Sbjct: 562 LERKYSGQL-DEKAITYLSYVVDGAKRMQKLIEGLLNYSRI---SREARLVPVDTNESFS 617

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
            A++ ++    E    +       +P +L D   + Q+  N++ N + +   G    +  
Sbjct: 618 AAVANLEQRIRESGGDVTND---PLPIVLGDETQLVQLFQNLVGNGLKYRKPGSIPHVHL 674

Query: 730 THTSNE-EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
           +      E +  V D G+G+ +   ++  + F ++    +    GTG+GL L K +V+ +
Sbjct: 675 SARPAGLEWLFSVSDNGIGIESQHYDRVFQIFQRLH--TKEEYPGTGIGLALCKKIVERH 732

Query: 789 MGKFYIFSTPAKGTLIEIIFP 809
            G+ ++ S P +GT    I P
Sbjct: 733 GGRIWVESRPGEGTTFYFILP 753


>gi|114569501|ref|YP_756181.1| multi-sensor signal transduction histidine kinase [Maricaulis maris
           MCS10]
 gi|114339963|gb|ABI65243.1| multi-sensor signal transduction histidine kinase [Maricaulis maris
           MCS10]
          Length = 911

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 127/686 (18%), Positives = 245/686 (35%), Gaps = 65/686 (9%)

Query: 176 SGFRGFGIVHVNRVD------NDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS 229
            G  G  +  ++         +D              +           +          
Sbjct: 193 DGTVGAFVARLSTESALPDWGDDRVVALADAQGGMLAIRPRMPSARPGTQLAERF--GLQ 250

Query: 230 PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYT----- 284
           P     +       T      ++ +     P+  +E             +    T     
Sbjct: 251 PGFIDSLAAGGGGATSDARFGEERVTFAVAPITGTELRVYALGAMRINQDAWYRTISFYG 310

Query: 285 KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFY 343
                         +  ++      S     ++ E      ++      + ++      +
Sbjct: 311 LMFIAPIFVALGLCALVFMQMGRLRSTRQQLEDNEQRFRVAIEGARCGVWDWNPEADTVF 370

Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403
              S   +    +  +      L  L   P   D   ++  M        +         
Sbjct: 371 VTDSLARILGLDAATECTGQQFL-QLFSKP---DRERLRAAMRGAPAGAEVDHEV----- 421

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
                + + +             +    G+  +  + +  + ++     +L + LE+ S+
Sbjct: 422 -LAARSPVWLQMRGRILPGGEANHTRIIGVAIDVTERKGAQARVAAAENRLRAALESMSE 480

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
              + +    ++  NR    LF +    +        +  +          + +      
Sbjct: 481 SFVLWDSRQRLVLWNRKFRDLFDFTDGMLK-----PGMSYDAVEQAAARAIKTVHGGSEG 535

Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI------ 577
                        + L                    DI++ K  +  L+  +        
Sbjct: 536 KAAYEIEL--SNGRWLHYSDRPT---ADGGLVSVGADITDLKHHEAALTENESQLRKTVD 590

Query: 578 ----------------------AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
                                 AE+ +  KS+FLA +SHE+RTPL AI GFSE++  + F
Sbjct: 591 DVKRSQARIADLAKKYEEEKIRAEEANRSKSEFLANMSHELRTPLNAINGFSEIMMQEMF 650

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
           GPLG+ RY+ Y   I  SG  +L+++ND+LD+SKIE+GKM L  EP    E V ++I +V
Sbjct: 651 GPLGDDRYVGYMKDILSSGRHLLELINDILDMSKIEAGKMQLQPEPTDASELVEQSIRIV 710

Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
           +  A EK++ +R   + ++P I  D R+ KQ+ +N++SNA+ FTP GG++ +    +   
Sbjct: 711 RGRAEEKQLKLRADVS-DLPEIEVDPRAFKQVMINLVSNAVKFTPEGGRVTVRGFLSGLG 769

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            V  +V DTG+G+   +L +  +PF QI +      +G+GLGL L+K++++ + G   I 
Sbjct: 770 -VAFQVSDTGIGIAKDDLPRLGRPFEQIESQHSKSFQGSGLGLALSKSLIELHGGTLSID 828

Query: 796 STPAKGTLIEIIFPLY-DTSHPHDCI 820
           S   +GT + ++ P+  D   P D I
Sbjct: 829 SVLGEGTTVSVVLPISQDQPIPRDAI 854


>gi|304393143|ref|ZP_07375071.1| PAS/PAC sensor signal transduction histidine kinase [Ahrensia sp.
            R2A130]
 gi|303294150|gb|EFL88522.1| PAS/PAC sensor signal transduction histidine kinase [Ahrensia sp.
            R2A130]
          Length = 1323

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 167/438 (38%), Positives = 254/438 (57%), Gaps = 7/438 (1%)

Query: 383  PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             +    SD      +A       + E +         +  +   N+  +G  P   DT  
Sbjct: 882  RLAARGSDVVEDEVAATTSKNPLSPEVAARDILSLQVEEARQRMNLRGDGETPSTSDTTS 941

Query: 443  NKRKME-----IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
              R+       ++   L +IL+ ++DG+ I++ EG++   NR+   LF    E I  +  
Sbjct: 942  PTREASPHFTGMQADDLRAILDVSTDGVIIVSNEGVVRDINRSAEALFDVDAEAIAHRSI 1001

Query: 498  TVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSCYS 555
            T  L   +      YL  + +  +   L   +  +G T +  L+ L + + +L  S    
Sbjct: 1002 TRLLAPESHRTALDYLANMGATGVASLLNDGREVVGKTSQGGLVPLFMTVGQLQHSDDCC 1061

Query: 556  LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
              + DI+ WK+ + +L   K  AE  +  K+ FLA++SHEIRTPL AIIGFSE++  +R 
Sbjct: 1062 AVVRDITHWKKAEEELLTTKAAAEGANELKTQFLAKISHEIRTPLNAIIGFSEMMIEERL 1121

Query: 616  GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
            G + N RY  Y   I+RSG  VLD+VNDLLDI+KIE+GKM + F+ V L+  VSE ++++
Sbjct: 1122 GRIDNDRYRGYLRDINRSGAHVLDLVNDLLDITKIEAGKMEMDFDAVDLNRTVSENVAIL 1181

Query: 676  QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
            Q  AN  RI+IRTS +  +P+++AD RS++QI LN++SN+I FT SGGQ+I+ST +  + 
Sbjct: 1182 QAEANADRIIIRTSLSTVVPKVVADQRSMRQIVLNLVSNSIKFTKSGGQVIVSTVYEDSG 1241

Query: 736  EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            EV+LRVRDTGVGM+  E+E+A++PF Q  ++     +GTGLGLPL KA+V+AN   F+I 
Sbjct: 1242 EVVLRVRDTGVGMSASEMEQALQPFRQTASAAVSATKGTGLGLPLTKALVEANRADFHIE 1301

Query: 796  STPAKGTLIEIIFPLYDT 813
            STP +GTL+EI FP+   
Sbjct: 1302 STPDEGTLVEIHFPVQRV 1319



 Score =  180 bits (457), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 85/438 (19%), Positives = 154/438 (35%), Gaps = 30/438 (6%)

Query: 41  KENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISE 100
            + P  +  +           +         + F F    R VRFTW          +S 
Sbjct: 436 AKQPEAEIEDAEPVAASIATDLEPDTEDKEADGFRFASAARPVRFTWATGPDKAFSAVSA 495

Query: 101 ELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVP 160
           EL  T+G  A  +  M    VS+ L  +  + I +LL + +TW  +T LWP++GT+L VP
Sbjct: 496 ELANTVGPRASAIDDMEWSQVSEKLGFENGDVIDELLDKGDTWSNRTVLWPVDGTDLRVP 555

Query: 161 IDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKE 220
           +DLA LP Y   R F GF GFGI+       D   +    D+  + L ++   +   E +
Sbjct: 556 VDLAGLPSYDTARSFRGFNGFGIIRTADAMVDDTLVEDAEDETDNDLRQLGSDYEGGEND 615

Query: 221 KY----DIFSQQSPP--PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQED 274
           +     +I S  + P        +   +                  L + E S+  +  +
Sbjct: 616 EANADHEIASNVTAPIGFLKPFSSDTKTDEANEPETSTSDTETTRVLSSDETSNFRQIGE 675

Query: 275 FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE---------- 324
             T N  + T  +   +  ++   S         P++    +E  + + E          
Sbjct: 676 TLTDNAAKATDDEEAESAADSFVPSAFANRAIAEPNVEPETEEDNSSSAETDSESKAVPK 735

Query: 325 ---------TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
                     + + PIP  VY    L + N  F   T Y  + ++   GG++ L      
Sbjct: 736 TDRANVDTSILSRLPIPVLVYRDDELLFGNDEFFSTTGYADLPELAERGGVAALF----- 790

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
           +D +A     +   D   +     L ++ W+ E ++ +T       N   ++   +    
Sbjct: 791 ADADAKGTSPIRHRDGHDLNLHGNLQSVPWDSEKAMLLTLRHTPPGNGNSDDRGGDEGGK 850

Query: 436 EDVDTRINKRKMEIEVMQ 453
            +               +
Sbjct: 851 GNGPAPAPSSNDRGSRSE 868


>gi|209514966|ref|ZP_03263835.1| multi-sensor hybrid histidine kinase [Burkholderia sp. H160]
 gi|209504592|gb|EEA04579.1| multi-sensor hybrid histidine kinase [Burkholderia sp. H160]
          Length = 1042

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 123/728 (16%), Positives = 241/728 (33%), Gaps = 42/728 (5%)

Query: 119 CDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPI----EGTNLYVPIDLAALPIY----- 169
            +V  +     +  I +  K      G T +  +     G    V       P       
Sbjct: 104 SEVIVVDDSHADPRIQEFFKTYLMPLGITAMLDVPIHLHGRVDGVLRLAQLGPRTPWTPE 163

Query: 170 SRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYD------ 223
            R    +      +              +  +++ + L         V     D      
Sbjct: 164 DRVFGIALANLIALAVERDERIRAEEALRESEQRLATLVAYAPDAILVFDVDADRYIQVN 223

Query: 224 ----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTIN 279
               +         L++     S       +   +   +Y  +     +   +     + 
Sbjct: 224 KQAALLFGYDCESLLQIDPTRLSPERQPDGRLSSVARREYLDVALRGGTPVFEWIHQNVG 283

Query: 280 LNQYTKKQYFGTLQNNSKE--SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS 337
                 +     L +          +               E      +   P    +  
Sbjct: 284 GELIPCEIRLVRLPHARCRLVRGSIIDIGERKRTEQALRASEQRLSTMLAYSPDAITLLD 343

Query: 338 HG--NLFYANPSFLLLTKYKSVDDIE-IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394
                    N     L  Y+    +      LS           +A +  +L   D    
Sbjct: 344 VDTLRFVEVNEQAARLYGYERTTLLRLGPVELSPECQPDGRRSADAAREKVLEALDGGVP 403

Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
                                                G   +  + +  +  +     ++
Sbjct: 404 VFE-----WTHLNAAGALFLCEVRLVRLPDASRRLVRGSIIDISERKRAEAALRESEARI 458

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT-PSVMNHYL 513
             IL+A+ D I  I+  G I+  N A  + FGY  + ++ +     +   +         
Sbjct: 459 RGILDASMDCIISIDHAGRIIEFNPASERTFGYQRKHVIGRELAELIIPPSLRDAHRRGF 518

Query: 514 TEILSLDLRQTLEK--ITLGSTKEEKLLSLRIIIKKLPFSSCYS-LTMHDISEWKQEKNK 570
              L+      L +         +     + I +  +         T+ DI+  K+ + +
Sbjct: 519 ARYLATGEGPVLGRRIEVQAQRSDGTEFPVEISVTPILGGPKLVTATVRDITASKRTQEE 578

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           L  AK+ AEK S  KS+FLA +SHE+RTPL +++G+++++   R     + R  +  N I
Sbjct: 579 LHEAKEAAEKASRAKSEFLASMSHELRTPLNSVLGYAQLL---RCEEELSQRQRKALNVI 635

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
            +SG  +  ++ ++LD++KIE+G +++  E V L   +   + + +  A  K +    + 
Sbjct: 636 QQSGEHLQRLIEEILDMAKIEAGTLDIVAENVDLHRMLDGIVEITRSRAQSKGLAFTFAP 695

Query: 691 ANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749
             ++P ++ AD R + Q+ +N+L NAI +T  G ++++ T       V   V DTG+G+ 
Sbjct: 696 GADVPAVVSADERRLCQVLMNLLDNAIKYTRHG-EVVLRTMMHERA-VCFVVEDTGLGIR 753

Query: 750 NYELEKAMKPFGQI-PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
              L +    F Q+   S     EGTGLGL ++K +V    G+  + S P +G+      
Sbjct: 754 PEHLSEIFDVFHQVRDPSMT--VEGTGLGLAISKRLVHLMGGELQVASKPHEGSRFWFEL 811

Query: 809 PLYDTSHP 816
            L   S P
Sbjct: 812 ELRPVSAP 819



 Score = 78.9 bits (193), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 37/388 (9%), Positives = 91/388 (23%), Gaps = 33/388 (8%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID------PNNHIGDLLK 138
             +++DA     +++++     G     ++ +    +S     D            D+  
Sbjct: 210 LVFDVDAD-RYIQVNKQAALLFGYDCESLLQIDPTRLSPERQPDGRLSSVARREYLDVAL 268

Query: 139 RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
           R  T   +     + G  +   I L  LP ++R R   G      +             +
Sbjct: 269 RGGTPVFEWIHQNVGGELIPCEIRLVRLP-HARCRLVRG-----SIIDIGERKRTEQALR 322

Query: 199 RLDKKFSHL------------HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY 246
             +++ S +             +  +     E+       +++    L            
Sbjct: 323 ASEQRLSTMLAYSPDAITLLDVDTLRFVEVNEQAARLYGYERTTLLRLGPVELSPECQPD 382

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
                D  + +    L                 L     +       +        +   
Sbjct: 383 GRRSADAAREKVLEALDGGVPVFEWTHLNAAGALFLCEVRLVRLPDASRRLVRGSIIDIS 442

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365
                 A   E E      +D        +   G +   NP+      Y+    I     
Sbjct: 443 ERKRAEAALRESEARIRGILDASMDCIISIDHAGRIIEFNPASERTFGYQRKHVIGRE-- 500

Query: 366 LSTLLDAPKLSDNNAIKPVM-LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
           L+ L+  P L D +       L   +   +     +   + +                  
Sbjct: 501 LAELIIPPSLRDAHRRGFARYLATGEGPVLGRRIEVQAQRSDGTEFPV----EISVTPIL 556

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVM 452
                      +   ++  + ++     
Sbjct: 557 GGPKLVTATVRDITASKRTQEELHEAKE 584



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/244 (12%), Positives = 75/244 (30%), Gaps = 21/244 (8%)

Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405
           P++                 +      P++ +      + L  +    +        +  
Sbjct: 95  PAYFQALGTS------EVIVVDDSHADPRIQEFFKTYLMPLGITAMLDVPIHLH-GRVDG 147

Query: 406 NRENSLAMTFIPFEKANQ--FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
               +      P+   ++           +  E  +    +  +     +L +++    D
Sbjct: 148 VLRLAQLGPRTPWTPEDRVFGIALANLIALAVERDERIRAEEALRESEQRLATLVAYAPD 207

Query: 464 GIAIINRE-GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS------VMNHYLTEI 516
            I + + +    +  N+  + LFGY  E +L+   T    +  P           YL   
Sbjct: 208 AILVFDVDADRYIQVNKQAALLFGYDCESLLQIDPTRLSPERQPDGRLSSVARREYLDVA 267

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL--TMHDISEWKQEKNKLSHA 574
           L            +      +L+   I + +LP + C  +  ++ DI E K+ +  L  +
Sbjct: 268 LRGGTPV---FEWIHQNVGGELIPCEIRLVRLPHARCRLVRGSIIDIGERKRTEQALRAS 324

Query: 575 KKIA 578
           ++  
Sbjct: 325 EQRL 328



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 29/371 (7%), Positives = 82/371 (22%), Gaps = 25/371 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQ-NTWYG 145
           ID  G + E +    +T G     +IG  L ++     +           L        G
Sbjct: 472 IDHAGRIIEFNPASERTFGYQRKHVIGRELAELIIPPSLRDAHRRGFARYLATGEGPVLG 531

Query: 146 KTTLWPIEGTNL-YVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
           +      + ++    P++++  PI    +  +       V         +       +  
Sbjct: 532 RRIEVQAQRSDGTEFPVEISVTPILGGPKLVT-----ATVRDITASKRTQEELHEAKEAA 586

Query: 205 SHLHEIKKGHSSVEKEKYD------IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
                 K    +    +        +   Q       +  +            + L+   
Sbjct: 587 EKASRAKSEFLASMSHELRTPLNSVLGYAQLLRCEEELSQRQRKALNVIQQSGEHLQRLI 646

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
             +L   +      +                   ++ ++      +      + A     
Sbjct: 647 EEILDMAKIEAGTLDIVAENVDLHRMLDGIVEITRSRAQSKGLAFTFAPGADVPAVVSAD 706

Query: 319 ENLTPETVDKCPI--------PFFVYSHGNLFYANPSFLLLTKYK-SVDDIEIAGGLSTL 369
           E    + +                V        A    +  T      + +     +   
Sbjct: 707 ERRLCQVLMNLLDNAIKYTRHGEVVLRTMMHERAVCFVVEDTGLGIRPEHLSEIFDVFHQ 766

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL-AMTFIPFEKANQFPENM 428
           +  P ++       + + +     +    ++ +           +   P         N 
Sbjct: 767 VRDPSMTVEGTGLGLAISKRLVHLMGGELQVASKPHEGSRFWFELELRPVSAPTPVATNW 826

Query: 429 PQNGIEPEDVD 439
           P  G+      
Sbjct: 827 PVTGVAGARRR 837



 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/386 (7%), Positives = 89/386 (23%), Gaps = 30/386 (7%)

Query: 94  YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR------QNTWYGKT 147
              E++E+  +  G     ++ +   ++S     D         ++            + 
Sbjct: 348 RFVEVNEQAARLYGYERTTLLRLGPVELSPECQPDGRRSADAAREKVLEALDGGVPVFEW 407

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
           T     G      + L  LP    +R     RG  I           A  +  + +   +
Sbjct: 408 THLNAAGALFLCEVRLVRLP--DASRRLV--RGSII--DISERKRAEAALRESEARIRGI 461

Query: 208 HEIKKGHSSVEKEKYDIFSQQSP---PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
            +              I             + K+ +            +    +      
Sbjct: 462 LDASMDCIISIDHAGRIIEFNPASERTFGYQRKHVIGRELAELIIPPSLRDAHRRGFARY 521

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFG---TLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
             +              Q +    F    ++           +     + S    E  + 
Sbjct: 522 LATGEGPVLGRRIEVQAQRSDGTEFPVEISVTPILGGPKLVTATVRDITASKRTQEELHE 581

Query: 322 TPETVDKCP------IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
             E  +K        +    +       +   +  L + +          L+ +  + + 
Sbjct: 582 AKEAAEKASRAKSEFLASMSHELRTPLNSVLGYAQLLRCEEELSQRQRKALNVIQQSGEH 641

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
                 + + + + +   +   A    +    +  + +T    +         P   +  
Sbjct: 642 LQRLIEEILDMAKIEAGTLDIVAENVDLHRMLDGIVEITRSRAQSKGLAFTFAPGADVPA 701

Query: 436 EDVDTRINKRKMEIEVMQLCSILEAT 461
                     ++      L ++L+  
Sbjct: 702 VVSADERRLCQV------LMNLLDNA 721


>gi|288942307|ref|YP_003444547.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180]
 gi|288897679|gb|ADC63515.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180]
          Length = 1436

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 138/762 (18%), Positives = 268/762 (35%), Gaps = 64/762 (8%)

Query: 92   HGY---LKEISEELPKTIGNYAFKMIGMRLCDV----SDILHIDPNNHIGDLLKRQNTWY 144
             G    +++++  +    G  A K++G RL +V    ++   +D       + +     +
Sbjct: 328  DGRDFIIRDLNHAVEYIEGVEATKLLGRRLTEVFPGVAECGFLD---VFARVWRTGRAEH 384

Query: 145  GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
                L+  +    +    +  LP      E      +  V   R         +   +  
Sbjct: 385  IPPRLYHDQRIQGWRENFVYRLPH----GELVAV--YDDVTERRTLQLALEESRERLELA 438

Query: 205  SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS-----SLTEYYAHKDDVLKTEKY 259
                E+      V+  +     + +     R+               +      +  +  
Sbjct: 439  LEGSELGMWDWRVQTGEVRFNDRWARILGYRLDELEPISIQTWNDLCHPDDRARVDRQLR 498

Query: 260  PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ-NNSKESFEYLSHRNHPSLSAYFDEG 318
                 E +    +      + +          ++    +            +     +E 
Sbjct: 499  RHFQGETAHYECEIRMRHKDGHWVWILDRGKVVEWGPDQRPVRMAGTHLDITERRQTEEK 558

Query: 319  ENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
             +     V++ P    +      + YANP+F  ++ Y     +E A G +  L     + 
Sbjct: 559  LHQLSLAVEQSPTSIVITDLDACIEYANPAFTRVSGYT----LEEAIGQNPRLLQSGQTP 614

Query: 378  NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
                + + +             LH  + + E  + +  I                ++ + 
Sbjct: 615  REIYEDLWVTLQRGEVW--RGELHNKRKDDELYVELATI-SPVRQPDGRVTHYLAVKEDI 671

Query: 438  VDTRINKRKMEIEVMQL------------------CSILEATSDGIAIINREGIILSTNR 479
             D +  + +++     L                    ILE+++DG+  ++  G     N 
Sbjct: 672  TDLKCAQEELDRYRQHLEELVETRTRELQLAEEHSRLILESSADGLYGVDIAGRTTFVNP 731

Query: 480  AVSKLFGYPVEDILRKPFTVFLEQ-----NTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
            A   + GY  E +L +P    +           + +  L   L        +        
Sbjct: 732  AACAMLGYTPEQLLGRPSHEIIHHSHVDGRHYPMEDCLLHSTLLNGEVLRGDDEVFWR-A 790

Query: 535  EEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
            +   L +      +          ++  D+S  KQ +     A   AE+ +  KS+FLA 
Sbjct: 791  DGTPLPVSYSSHPIRREGEIVGAVVSFIDVSTQKQAEAAREAALAEAERLARLKSEFLAN 850

Query: 592  VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
            +SHEIRTPL A++GF+++   +        R   +   I  SG L+L I+ND+LD SKIE
Sbjct: 851  MSHEIRTPLNAVLGFAQIGARE----TDPNRARTFFRRILDSGQLLLGIINDILDFSKIE 906

Query: 652  SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALN 710
            +GK+++H   V L   +  ++ L+   A +K +        N+P   + D   + Q+  N
Sbjct: 907  AGKLDIHDAEVDLRAVIERSVDLLTTRAKDKGLRFSLEEDPNLPATFMGDDLRLSQVLAN 966

Query: 711  ILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
            +LSNA+ FT  G  +           ++  V DTG+GM    L    +PF Q   S   R
Sbjct: 967  LLSNAVKFTDQGA-VTFGIRREE-GWIVFSVEDTGIGMHEDYLANLFQPFEQADGSITRR 1024

Query: 771  GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
              G+GLGL ++K +V+   G+   +S   +GT  E   PL +
Sbjct: 1025 YGGSGLGLAISKRLVELMGGEIRAWSRFGEGTRFETRLPLIE 1066



 Score = 81.2 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 43/421 (10%), Positives = 97/421 (23%), Gaps = 20/421 (4%)

Query: 178 FRGFGIVHVNRVDNDPRALGKRLDK-KFSHLHEIKKGHSSVEKEKYDIFSQQSPPP---- 232
            R  G+   +R           LD  K   +           +    +  ++ P      
Sbjct: 25  LRRAGVAFESRRVETREDFLVALDDFKPDAILADFGLPRFDGRTAMQLAHERDPDWPFIF 84

Query: 233 -HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291
               +  + +         D +LK     L  + E +L        + L           
Sbjct: 85  VTGALGEESAVELLRNGASDYILKDRLTRLPEALERALEAARQRADLRLMARRASGLLEL 144

Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLL 351
            +                 +               +       V        A       
Sbjct: 145 PRVAEHFGEAEFLQFGQTLVEDLTGSRIAFIHRVSEDQTTIDLVTWSHRTLDAGCLAAPP 204

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411
                      A  L      P + +++        RS+   I     +          +
Sbjct: 205 LHESVDQAGLWADALRQ--QRPIVVNDDPTAAERRGRSEEGHIPLERFISLPVIEGGRVV 262

Query: 412 AMTFIPFEKANQFPENMPQNGIEP----EDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
            +  I  ++A     ++    +        +  R  ++ +     +  ++ E    G+ I
Sbjct: 263 MLFCIGNKEAPYTELDVETLQLVANELWRILCQRRAEQDLRESEARFHALFEHMRSGVCI 322

Query: 468 INR--EGI---ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522
                +G    I   N AV  + G     +L +  T                 +      
Sbjct: 323 YEAIEDGRDFIIRDLNHAVEYIEGVEATKLLGRRLTEVFPGVAECGFLDVFARVWRTGRA 382

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES 582
              E I      ++++   R                 D++E +  +  L  +++  E   
Sbjct: 383 ---EHIPPRLYHDQRIQGWRENFVYRLPHGELVAVYDDVTERRTLQLALEESRERLELAL 439

Query: 583 S 583
            
Sbjct: 440 E 440



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/379 (11%), Positives = 93/379 (24%), Gaps = 37/379 (9%)

Query: 86   TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD-------LLK 138
             + +D  G    ++      +G    +++G    ++    H+D  ++  +       LL 
Sbjct: 717  LYGVDIAGRTTFVNPAACAMLGYTPEQLLGRPSHEIIHHSHVDGRHYPMEDCLLHSTLLN 776

Query: 139  RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
             +         W  +GT   +P+  ++ PI  R  E  G     I           A  +
Sbjct: 777  GEVLRGDDEVFWRADGTP--LPVSYSSHPIR-REGEIVGAVVSFI--DVSTQKQAEAARE 831

Query: 199  RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
                +   L  +K    +    +         P +  +        E   ++        
Sbjct: 832  AALAEAERLARLKSEFLANMSHEIRT------PLNAVLGFAQIGARETDPNRARTFFRRI 885

Query: 259  YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN-HPSLSAYFDE 317
                      + +  DF  I   +         L+   + S + L+ R     L    +E
Sbjct: 886  LDSGQLLLGIINDILDFSKIEAGKLDIHDAEVDLRAVIERSVDLLTTRAKDKGLRFSLEE 945

Query: 318  GE-----------NLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
                          L+    +           G + +          +   D     G  
Sbjct: 946  DPNLPATFMGDDLRLSQVLANLLSNAVKFTDQGAVTFGIRREEGWIVFSVEDT--GIGMH 1003

Query: 367  STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP- 425
               L         A   +       + +  +     ++       A +        +   
Sbjct: 1004 EDYLANLFQPFEQADGSITRRYG-GSGLGLAISKRLVELMGGEIRAWSRFGEGTRFETRL 1062

Query: 426  ---ENMPQNGIEPEDVDTR 441
               E     G      +T 
Sbjct: 1063 PLIEPRGVIGPGRLITETA 1081



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/146 (9%), Positives = 38/146 (26%), Gaps = 5/146 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147
            D    ++  +    +  G    + IG     +            +   L+R   W G+ 
Sbjct: 576 TDLDACIEYANPAFTRVSGYTLEEAIGQNPRLLQSGQTPREIYEDLWVTLQRGEVWRGEL 635

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                +         ++  P+   +   + +    +          +    R  +    L
Sbjct: 636 HNKRKDDELYVELATIS--PVRQPDGRVTHY--LAVKEDITDLKCAQEELDRYRQHLEEL 691

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPH 233
            E +     + +E   +  + S    
Sbjct: 692 VETRTRELQLAEEHSRLILESSADGL 717


>gi|329850157|ref|ZP_08265003.1| mmoS [Asticcacaulis biprosthecum C19]
 gi|328842068|gb|EGF91638.1| mmoS [Asticcacaulis biprosthecum C19]
          Length = 757

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 102/474 (21%), Positives = 200/474 (42%), Gaps = 19/474 (4%)

Query: 342 FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401
            Y +P    +            G    L       +  AI    +          S R  
Sbjct: 148 TYWSPETYAIFGCDPETFTPRFGETMALYHPDDREEIRAIVEAAIA----GNGEFSFRAR 203

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
            I+ +      +      + ++  + +   G+  +  D    +   E    +   + +++
Sbjct: 204 CIRHDSGEIRHIETNGVCERDESGKAIGLFGVVHDLSDILSAQEATEASEARYRLLADSS 263

Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
           +D I++   +G I   + AV KL G+   ++  +     +      V        +    
Sbjct: 264 NDIISVFGLDGAIEYLSPAVEKLLGFTPAELTGRNVRDIVLPEDYPVTRAAFASYVRGGD 323

Query: 522 RQTLEK-ITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKK 576
              + +       K+  ++ L    + +             + DI+E K  +  L  A  
Sbjct: 324 WSAVPRVQYRARHKQGHIVWLEASPRAMLGPDGKIAKLQDVVRDITERKAVEAALEDAMV 383

Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
            A   +  KS FLA +SHE+RTPLT+IIGFS +++      + +     Y+  I  +   
Sbjct: 384 DANAAAEAKSQFLATMSHELRTPLTSIIGFSALLRE----VVESEEPRRYSQRIWTASQG 439

Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696
           +L ++ND+LD SK+E+G++ L   P S +E + E   L+++ A+ K + +     +++P 
Sbjct: 440 LLALINDILDHSKLEAGQLELDLAPCSANELMQEVADLLEVQAHAKGLFLTVDTDDDMPL 499

Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKA 756
           +L D   ++QI +N+  NA+ FT  GG + I+      + + + V DTG G++    ++ 
Sbjct: 500 MLLDEVRMRQILINLAGNAVKFTGDGG-VTIALHWR-GDRLQVTVTDTGPGISPEGHKRL 557

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            K F Q+ ++      GTGLGL + K +V+   G+  + S+P  G++     P+
Sbjct: 558 FKRFSQVDHTTN----GTGLGLMICKQLVELMGGRIGVESSPGNGSMFWFDIPV 607



 Score = 65.8 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 23/235 (9%), Positives = 57/235 (24%), Gaps = 7/235 (2%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
              G ++ +S  + K +G    ++ G  + D+                 R   W     +
Sbjct: 271 GLDGAIEYLSPAVEKLLGFTPAELTGRNVRDIVLPEDYPVTRAAFASYVRGGDWSAVPRV 330

Query: 150 WPIEGTNLY--VPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                      V ++ +   +   + + +  +   +V          A  +      +  
Sbjct: 331 QYRARHKQGHIVWLEASPRAMLGPDGKIAKLQ--DVVRDITERKAVEAALEDAMVDANAA 388

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
            E K    +    +              ++  V S       +           L +  +
Sbjct: 389 AEAKSQFLATMSHELRTPLTSIIGFSALLREVVESEEP---RRYSQRIWTASQGLLALIN 445

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
            + +        L           L     +  E  +H     L+   D+   L 
Sbjct: 446 DILDHSKLEAGQLELDLAPCSANELMQEVADLLEVQAHAKGLFLTVDTDDDMPLM 500



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 51/526 (9%), Positives = 127/526 (24%), Gaps = 80/526 (15%)

Query: 90  DAHGYLKEISEELPKTIGNY-AFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           D  G +   +       G     K  G  L   S    +         L  + +    + 
Sbjct: 17  DNDGTIVAANRYFRAMSGYDGGPKTFGRCLTRPS-QFILSAKLLPELNLTGEASEIALSL 75

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP-----------RALG 197
             P +G +  VPI L A     R+ +   +  F      R                    
Sbjct: 76  TGP-DGDS--VPILLNAR----RDGDHFHYAVFP-AKERREYETEYLNAKKKLTQYSDYL 127

Query: 198 KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257
           +  ++     H      +       + ++     P         ++  Y+    + ++  
Sbjct: 128 RMAERLAHLGHWHGNMVTKETYWSPETYAIFGCDPETFTPRFGETMALYHPDDREEIRAI 187

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH----PSLSA 313
               +                +      +      ++ S ++       +      S   
Sbjct: 188 VEAAIAGNGEFSFRARCIRHDSGEIRHIETNGVCERDESGKAIGLFGVVHDLSDILSAQE 247

Query: 314 YFDEGENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
             +  E       D       V+   G + Y +P+   L  +   + +        +L  
Sbjct: 248 ATEASEARYRLLADSSNDIISVFGLDGAIEYLSPAVEKLLGFTPAE-LTGRNVRDIVLPE 306

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLH-TIQWNRENSLAMTFIPFEKANQFPENMPQN 431
               D    +            +A  R+    +  + + + +   P        +     
Sbjct: 307 ----DYPVTRAAFASYVRGGDWSAVPRVQYRARHKQGHIVWLEASPRAMLGPDGKIAKLQ 362

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
            +  +  + +  +  +E          +A  D              N A         + 
Sbjct: 363 DVVRDITERKAVEAALE----------DAMVDA-------------NAAAEA----KSQF 395

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
           +      +     +    +  L E++  +  +   +                       S
Sbjct: 396 LATMSHELRTPLTSIIGFSALLREVVESEEPRRYSQRIW------------------TAS 437

Query: 552 SCYSLTMHDISEWKQEKN---KLSHAKKIAEKESSHKSDFLARVSH 594
                 ++DI +  + +    +L  A   A +     +D L   +H
Sbjct: 438 QGLLALINDILDHSKLEAGQLELDLAPCSANELMQEVADLLEVQAH 483



 Score = 48.5 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/142 (13%), Positives = 48/142 (33%), Gaps = 8/142 (5%)

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
            +  E    G+ + + +G I++ NR    + GY                +   +    L 
Sbjct: 3   EAAFELAPCGLVVCDNDGTIVAANRYFRAMSGYDGGPKTFG--RCLTRPSQFILSAKLLP 60

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA 574
           E+        +     G   +   + + +  ++      +   +    E ++ + +  +A
Sbjct: 61  ELNLTGEASEIALSLTG--PDGDSVPILLNARR--DGDHFHYAVFPAKERREYETEYLNA 116

Query: 575 KKIAEKES--SHKSDFLARVSH 594
           KK   + S     ++ LA + H
Sbjct: 117 KKKLTQYSDYLRMAERLAHLGH 138


>gi|91795067|ref|YP_564718.1| ATP-binding region, ATPase-like protein [Shewanella denitrificans
           OS217]
 gi|91717069|gb|ABE56995.1| multi-sensor hybrid histidine kinase [Shewanella denitrificans
           OS217]
          Length = 1120

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 118/562 (20%), Positives = 212/562 (37%), Gaps = 21/562 (3%)

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
                           E  + I            T+   +      L  +        F 
Sbjct: 214 TGMAAARFIPPPGVVLEQANNIGSGLLATGVTITTIVITALVIAINLVLKYREVSQKAF- 272

Query: 317 EGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
             E      ++        + + G +   N +   +  +     I     L  L+  P  
Sbjct: 273 ANEQRLEAMMETAADGIVSINAKGIITSINQAITAMLGWDKAQLIGQNVSL--LMPEPDK 330

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
             +++     L  ++   I  +  +  +         +         + P      G   
Sbjct: 331 GRHDSYLSRYLATNEPHIIGNAREVTALHKLG---HTVPVRLAIGHARLPNEDVFVGFIS 387

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIA-IINREGI-ILSTNRAVSKLFGYPVEDIL 493
           +       +R+++    +  S++          ++ EG  +L  + AV  + GYP  D L
Sbjct: 388 DISQRLKMERELKENEEKFRSLIGNIPGAAYRCLDTEGWPMLFVSDAVFDITGYPASDFL 447

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553
                  +           L      D  +T          + ++  +      +     
Sbjct: 448 LPNPVRNICDLYHPEHQELLQ--FDADKNKTFSLEYRIIRSDGEIRWVLETGTYVKDPQG 505

Query: 554 YS----LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                   + DI+  KQ +  L  AK+ AE  +  KS FLA +SHEIRTP+ AIIGFS+V
Sbjct: 506 SVLWMDGFIMDITPRKQMEQDLQKAKEAAELATEAKSAFLANMSHEIRTPMNAIIGFSDV 565

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           +              +Y   I+ S N +L ++ND+LD +K+E G++ L  +  SL E + 
Sbjct: 566 MLTTDLVAA----QRKYVTTINASANSLLHLLNDILDSAKLEKGQLQLEMQDFSLAEVID 621

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
              S + +   +KR+ I  S A  +          ++Q+ +NI+ NA+ FT  G Q+ +S
Sbjct: 622 MVTSTLSIQTRKKRLDIELSLAPELAEYYYGAADRLRQVLMNIVGNAVKFTEKG-QVHLS 680

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
              T + +V+  V+DTG+G+ +  ++   +PF Q   S   R  GTGLG  ++K +V+  
Sbjct: 681 IKPTQDGKVLFSVQDTGIGIASDRIQHIFEPFTQADASMSRRFGGTGLGTSISKQLVNLM 740

Query: 789 MGKFYIFSTPAKGTLIEIIFPL 810
            G+ +  S   KG+  E I PL
Sbjct: 741 GGEIWASSELGKGSCFEFILPL 762



 Score = 47.3 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 28/256 (10%), Positives = 66/256 (25%), Gaps = 19/256 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTW---- 143
           I+A G +  I++ +   +G    ++IG  +  +        ++  +   L          
Sbjct: 292 INAKGIITSINQAITAMLGWDKAQLIGQNVSLLMPEPDKGRHDSYLSRYLATNEPHIIGN 351

Query: 144 YGKTTLWPIEGTNLYVPIDLA-ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
             + T     G    VP+ LA           F GF     +             K  ++
Sbjct: 352 AREVTALHKLGHT--VPVRLAIGHARLPNEDVFVGF-----ISDISQRLKMERELKENEE 404

Query: 203 KFSHLHEIKK--GHSSVEKEKYDIFSQQSPPPHLR-MKNKVSSLTEYYAHKDDVLKTEKY 259
           KF  L        +  ++ E + +         +         L     +  D+   E  
Sbjct: 405 KFRSLIGNIPGAAYRCLDTEGWPMLFVSDAVFDITGYPASDFLLPNPVRNICDLYHPEHQ 464

Query: 260 PLLTSEES---SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
            LL  +     +   +      +       +    +++               +     +
Sbjct: 465 ELLQFDADKNKTFSLEYRIIRSDGEIRWVLETGTYVKDPQGSVLWMDGFIMDITPRKQME 524

Query: 317 EGENLTPETVDKCPIP 332
           +      E  +     
Sbjct: 525 QDLQKAKEAAELATEA 540


>gi|317152715|ref|YP_004120763.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316942966|gb|ADU62017.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 1228

 Score =  383 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 128/750 (17%), Positives = 268/750 (35%), Gaps = 61/750 (8%)

Query: 87   WNIDAHGYLKEISEELPKTIGNYAFKMIGMRL------CDVSDILHI-DPNNHIGDLLKR 139
            W +D        +++     G  A +  G  +       +          +  +  +L  
Sbjct: 352  WEMDIATRTFLFNDQFYSLYGTTAQREGGYHMTSETYEREFLHPDDATMVSREVARVLVT 411

Query: 140  QN---TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRAL 196
            Q    T   +  +   +G   ++ +    L +   +      +  G              
Sbjct: 412  QKPNYTARLEHRIVRRDGEVRHIVVT--YLLLRDTHGNPV--KTIGANQDVTEHKRFEQA 467

Query: 197  GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH---KDDV 253
              +  + +  L             +                   + L + +A     +  
Sbjct: 468  LFQSRESYRALLAGMPDIVMRFDREGRHLFVSDSVQAYVEPTSEAFLGKTHAELGFPEQD 527

Query: 254  LKTEKYPLLTSEESSLPEQEDFH-TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
                   + T  E+  P + +F                   + + +    LS     +  
Sbjct: 528  CLFWGKVIKTVFETGEPVETEFPFESRKGPVIFNWRLIPEFDANGQIQSALSISRDITEQ 587

Query: 313  AYFDEG-ENLTPETVDKCPIPFFVYSHG------NLFYANPSFLLLTKYKSVDDIEIAGG 365
               ++  E+L  + +D   +   +               NP+F   T  K+ + +     
Sbjct: 588  RQAEQDYESLFMKMLDGFAVHEIICDESGRPIDYRFLAVNPAFESHTGMKAEEVLGH--- 644

Query: 366  LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
              T+L+    +++  ++           +   +  H ++ +           FE     P
Sbjct: 645  --TVLEILPDTESAWVEKYGHVALTGEPLHFESYSHMLRKH-----------FEVTAFRP 691

Query: 426  ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKL 484
                   I  +  +    +         L  I E + D I+I + R    L  N A    
Sbjct: 692  APGRFACIFADVTERMQAQ-------EDLRRIFELSKDMISISDNRSARFLRINPAFMST 744

Query: 485  FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
             GY  E++LR+P+T  +  +   +    + + L     + +        K  + + L  +
Sbjct: 745  LGYSEEELLRQPYTALVHPDDVQMTADIIRDKLMAG-DEVVNFENRYRCKSGEYIWLNWV 803

Query: 545  IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
             + +           D+++ K+ + +L  AK+ AE  +  KS FLA +SHE+RTPL  I+
Sbjct: 804  ARPMADKGLTYAIARDVTDRKKYEAELIAAKETAESATRAKSQFLANMSHEVRTPLNGIL 863

Query: 605  GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
            G  ++++  R     +    +Y     ++   +  +++D+LDIS+IE+ K+ +  EP +L
Sbjct: 864  GMLQLMQQTRL----DHEQDDYVGNAIQASRRLTRLLSDILDISRIEAEKLIIMAEPFNL 919

Query: 665  DEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG 723
             E+++    L    AN+  I      +  IP  +L D   ++Q+  N++ NA+ FT SG 
Sbjct: 920  HESLNTVRDLFLPVANQSGIDFEFRVSPKIPTTLLGDAIRLQQVISNLVGNALKFTSSG- 978

Query: 724  QIIISTT-----HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
             + +  T        +  ++  ++DTG G+ +  L +  +PF Q+ +S   + +G GLGL
Sbjct: 979  TVTVEATTLSPLKPGSCRMLFSIKDTGCGIPDDRLGQLFQPFTQVDDSWNRQYQGAGLGL 1038

Query: 779  PLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
             + K +V    G   I S    GT + +  
Sbjct: 1039 SITKRLVALMGGTLCIESRVGVGTTVHLSI 1068



 Score =  100 bits (250), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 58/591 (9%), Positives = 145/591 (24%), Gaps = 79/591 (13%)

Query: 87  WNID-AHGYLKEISEELPKTIGNYAFKM--IGMRLCDVSDILHIDPNNHIGDLLKRQNTW 143
           W  D A G     S+E+ +     + +                +    +I    +    +
Sbjct: 218 WTYDSATGTAT-WSDEMFRLWDLDSEQGPPNRDTFIQSIHPDDVQAVKNILSRTRESGAF 276

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                +   +GT       +A   +   +         G           +    R   +
Sbjct: 277 SLDFRIKRPDGTTR----TVAMRGMRKDDGTGQATVMQGTCQDITERKQVQEALNRQRSE 332

Query: 204 FSH---LHEIKKGHSSVEKEKYDIFSQ---------------QSPPPHLRMKNKVSSLTE 245
                    +    + +   + DI ++                       M ++      
Sbjct: 333 LEESQTRLRLAMDMADIAPWEMDIATRTFLFNDQFYSLYGTTAQREGGYHMTSETYEREF 392

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFH--TINLNQYTKKQYFGTLQNNSKESFEYL 303
            +     ++  E   +L +++ +   + +      +         +  L++      + +
Sbjct: 393 LHPDDATMVSREVARVLVTQKPNYTARLEHRIVRRDGEVRHIVVTYLLLRDTHGNPVKTI 452

Query: 304 SHRNHPSLSAYFDEG----ENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVD 358
                 +    F++            +   P     +   G   + + S     +  S +
Sbjct: 453 GANQDVTEHKRFEQALFQSRESYRALLAGMPDIVMRFDREGRHLFVSDSVQAYVEPTS-E 511

Query: 359 DIEIAGGLSTLLDAPK--LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
                                              T     +R   +           + 
Sbjct: 512 AFLGKTHAELGFPEQDCLFWGKVIKTVFETGEPVETEFPFESRKGPV--------IFNWR 563

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI----AIINREG 472
              + +   +      I  +  + R  ++          S+     DG      I +  G
Sbjct: 564 LIPEFDANGQIQSALSISRDITEQRQAEQD-------YESLFMKMLDGFAVHEIICDESG 616

Query: 473 -----IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
                  L+ N A     G   E++L       L     + +  Y    L+ +       
Sbjct: 617 RPIDYRFLAVNPAFESHTGMKAEEVLGHTVLEILPDTESAWVEKYGHVALTGEPLHFESY 676

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA----KKIAEKESS 583
             +            +   + P    ++    D++E  Q +  L       K +     +
Sbjct: 677 SHMLRKH------FEVTAFR-PAPGRFACIFADVTERMQAQEDLRRIFELSKDMISISDN 729

Query: 584 HKSDFLARVSHEIRTP-LTAIIGFS-EVIKNQRFGPLGNPRYIEYANYIDR 632
             + FL         P   + +G+S E +  Q +  L +P  ++    I R
Sbjct: 730 RSARFLRI------NPAFMSTLGYSEEELLRQPYTALVHPDDVQMTADIIR 774



 Score = 76.2 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/310 (9%), Positives = 80/310 (25%), Gaps = 32/310 (10%)

Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY-ANPSFLLLTKYKSVDDI 360
            ++            E      E      I  + Y         +     L    S    
Sbjct: 186 LINRLRRGLAEQILAENRLHLVEAQKLALIGSWTYDSATGTATWSDEMFRLWDLDSEQ-- 243

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
                  T + +    D  A+K ++    +    +       I+     +  +      K
Sbjct: 244 -GPPNRDTFIQSIHPDDVQAVKNILSRTRESGAFSLD---FRIKRPDGTTRTVAMRGMRK 299

Query: 421 ANQFPENMPQNGIEPEDVDTR-------INKRKMEIEVMQLCSILEATSDGIAIINREGI 473
            +   +     G   +  + +         + ++E    +L   ++        ++    
Sbjct: 300 DDGTGQATVMQGTCQDITERKQVQEALNRQRSELEESQTRLRLAMDMADIAPWEMDIATR 359

Query: 474 ILSTNRAVSKLFGYPVEDILRKPF------TVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
               N     L+G   +               FL  +  ++++  +  +L         +
Sbjct: 360 TFLFNDQFYSLYGTTAQREGGYHMTSETYEREFLHPDDATMVSREVARVLVTQKPNYTAR 419

Query: 528 -ITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKES 582
                  ++ ++  + +    L  +            D++E K+ +  L  +++      
Sbjct: 420 LEHRIVRRDGEVRHIVVTYLLLRDTHGNPVKTIGANQDVTEHKRFEQALFQSRESYRA-- 477

Query: 583 SHKSDFLARV 592
                 LA +
Sbjct: 478 -----LLAGM 482



 Score = 73.5 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/374 (8%), Positives = 96/374 (25%), Gaps = 31/374 (8%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH--IDPNNHIGDLLKRQNTW 143
               D  G    +S+ +   +   +   +G    ++       +     I  + +     
Sbjct: 486 VMRFDREGRHLFVSDSVQAYVEPTSEAFLGKTHAELGFPEQDCLFWGKVIKTVFETGEPV 545

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +   +P E     V  +   +P +  N +        I                 +  
Sbjct: 546 ETE---FPFESRKGPVIFNWRLIPEFDANGQIQ--SALSISRDITEQRQAEQDY---ESL 597

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
           F  + +    H  +  E       +    +   ++            ++VL      +L 
Sbjct: 598 FMKMLDGFAVHEIICDESGRPIDYRFLAVNPAFESHTG------MKAEEVLGHTVLEILP 651

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG---EN 320
             ES+  E+     +       + Y   L+ + + +    +      + A   E    + 
Sbjct: 652 DTESAWVEKYGHVALTGEPLHFESYSHMLRKHFEVTAFRPAPGRFACIFADVTERMQAQE 711

Query: 321 LTPETVDKCPIPFFVYSH--GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
                 +       +  +        NP+F+    Y   + +           A    D+
Sbjct: 712 DLRRIFELSKDMISISDNRSARFLRINPAFMSTLGYSEEELLRQP------YTALVHPDD 765

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
             +   ++              +  +      + + ++    A++         I  +  
Sbjct: 766 VQMTADIIRDKLMAGDEVVNFENRYRCKSGEYIWLNWVARPMADKG----LTYAIARDVT 821

Query: 439 DTRINKRKMEIEVM 452
           D +  + ++     
Sbjct: 822 DRKKYEAELIAAKE 835



 Score = 46.6 bits (109), Expect = 0.016,   Method: Composition-based stats.
 Identities = 25/269 (9%), Positives = 71/269 (26%), Gaps = 14/269 (5%)

Query: 331 IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390
           +     +   L          T    +      G +   +    L+D +  +  M     
Sbjct: 87  VAVIATAAFRLTLGGQGA--WTGVTVIVATGAIGVIWRHMKKKPLADASWGE--MFLFGL 142

Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450
              +   A + T+ W     +                     +    +   + ++ +   
Sbjct: 143 TLHLTMLALMLTLPWETAKVVLARITAPVLLLFPVGTCLMGLLLINRLRRGLAEQILAEN 202

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED--ILRKPFTVFLEQNTPSV 508
            + L    +    G    +      + +  + +L+    E     R  F   +  +    
Sbjct: 203 RLHLVEAQKLALIGSWTYDSATGTATWSDEMFRLWDLDSEQGPPNRDTFIQSIHPDDVQA 262

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH----DISEW 564
           + + L+                    +    ++ +   +    +  +  M     DI+E 
Sbjct: 263 VKNILSRTRESGA---FSLDFRIKRPDGTTRTVAMRGMRKDDGTGQATVMQGTCQDITER 319

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVS 593
           KQ +  L+  +   E+ S  +      ++
Sbjct: 320 KQVQEALNRQRSELEE-SQTRLRLAMDMA 347


>gi|323699910|ref|ZP_08111822.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. ND132]
 gi|323459842|gb|EGB15707.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio desulfuricans
           ND132]
          Length = 1033

 Score =  383 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 134/777 (17%), Positives = 256/777 (32%), Gaps = 49/777 (6%)

Query: 54  FTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM 113
           F D  +   +     D++  + F          W +D  G    +S  + +  G    +M
Sbjct: 139 FRDITERRSAENRARDNQEKYRFLAEN-ATDVIWTMDDKGRYTYVSPSVERIRGFAPEEM 197

Query: 114 IGMRLCDVSDILHIDPNNHIGDLLKRQN----------TWYGKTTLWPIEGTNLYVPIDL 163
           IGM   D      ++      + ++ +           T   +  L   +G+   +  + 
Sbjct: 198 IGMYAQDAVCPDSMEETRKAWERIEAEAEAASDRSPSPTVRVEVRLRKKDGS--MIWGES 255

Query: 164 AALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYD 223
            A  +        GF   G               +  +     L         + +    
Sbjct: 256 MARRLRDAYGNPIGF--IGTTRDITERKRIEERLRTSEHFLQALINATGDSVGLFQVDGT 313

Query: 224 IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY 283
           + +              +++ +         +                  +   +   + 
Sbjct: 314 VLAMNRNMARFMGMQGDAAVGQNVFDFIPRSQHAMIRETFRRAVDTHTPMNRQVVWSGRI 373

Query: 284 TKKQYFGTLQNNSKESFEYLSH--RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN- 340
                +  L      +                   + +      V+              
Sbjct: 374 LDGIIYPVLDGEETTAIAVYGRDVTEARFAEEARKKTQEQYRLIVETANEGILGLDANQV 433

Query: 341 LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400
           + YAN         +  + I       ++LD    S+    +  M  R          R 
Sbjct: 434 ITYANKIVADFFGCRVEEVIGR-----SILDFMAPSEIEDNERRMEQRKVGRRERYERRF 488

Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
             ++ +      M         +    +    +  +  + +           +L +IL+ 
Sbjct: 489 --VRRDGAEVWGM-ISSTPLMAEDGRLLGAFAMIADITEVKQAH-------ERLLNILDG 538

Query: 461 TSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL 519
            S  + + + E   IL  N  +   +G   E +        L+   P      L +    
Sbjct: 539 ISADVYVSDLETNNILFMNANMRDHYGLLEEGMACHKVIRDLDSRCPQCPKPELVD-ERG 597

Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579
               TL         +   L+    I+ L     +     DI+E K    +L  A   AE
Sbjct: 598 RPVGTLVSERYYEKLQRWHLNHDRAIRWLKGRLVHMHMAADITEIKTMAAELEKAMAKAE 657

Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639
             S  K++FLA +SHEIRTPL  ++G  ++++     PL      +Y +    SG  +L 
Sbjct: 658 AASLAKNEFLANMSHEIRTPLNGLLGMLQLMQMSELAPL----QRDYLDTALNSGRSLLQ 713

Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-IL 698
           ++ND+LD+SK+ESGK+ L   P  L E + + +S  +  A E+ + +R      +PR  +
Sbjct: 714 VLNDILDLSKVESGKLELEPIPFELGEVLDQVVSTFRHCAEERGVSMRWEIDETLPRHFV 773

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE------EVILRVRDTGVGMTNYE 752
           AD   ++QI  N++ NA+ FT SG  I +      +        ++  V DTG+G+   +
Sbjct: 774 ADKGRLRQILFNLVGNAVKFTESGS-IEVRACPLDSGAEDGTIRLLFEVSDTGIGIPRDK 832

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL--IEII 807
           +     PF Q+  S   + +GTGLGL + + +V    G   + +   KGT     I 
Sbjct: 833 VSTVFDPFTQVDGSSTRKYQGTGLGLGIVRRLVALMGGSITVDTEEGKGTSLYFTIR 889



 Score =  161 bits (408), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 52/507 (10%), Positives = 131/507 (25%), Gaps = 42/507 (8%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
             D  G + E +      IG     ++G  + D +             LL +      + 
Sbjct: 45  KTDVKGVILEANAAFCTLIGYAREDVLGKTVLDFTPRSERARERESIRLLLKSGQSSREM 104

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
               +      + +  +    +  +        +GI              +   +K+  L
Sbjct: 105 EKGLLTADGRDLLVQASCWLQHDESGRAVAL--WGIFRDITERRSAENRARDNQEKYRFL 162

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEKYPLL--- 262
            E          +K            +R     ++  +    A   D ++  +       
Sbjct: 163 AENATDVIWTMDDKGRYTYVSPSVERIRGFAPEEMIGMYAQDAVCPDSMEETRKAWERIE 222

Query: 263 --------TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
                    S   ++  +      + +    +     L++       ++      +    
Sbjct: 223 AEAEAASDRSPSPTVRVEVRLRKKDGSMIWGESMARRLRDAYGNPIGFIGTTRDITERKR 282

Query: 315 FDEGENLTPETVDKC------PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
            +E    +   +          +  F    G +   N +       +    +        
Sbjct: 283 IEERLRTSEHFLQALINATGDSVGLFQVD-GTVLAMNRNMARFMGMQGDAAVGQN----- 336

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
           + D    S +  I+       D         + + +        +            E  
Sbjct: 337 VFDFIPRSQHAMIRETFRRAVDTHTPMNRQVVWSGRILDGIIYPVL--------DGEETT 388

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
                  +  + R  +   +    Q   I+E  ++GI  ++   +I   N+ V+  FG  
Sbjct: 389 AIAVYGRDVTEARFAEEARKKTQEQYRLIVETANEGILGLDANQVITYANKIVADFFGCR 448

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
           VE+++ +    F+     S +      +    + +          ++   +   I    L
Sbjct: 449 VEEVIGRSILDFMAP---SEIEDNERRMEQRKVGRRERYERRFVRRDGAEVWGMISSTPL 505

Query: 549 PFSSCYS----LTMHDISEWKQEKNKL 571
                        + DI+E KQ   +L
Sbjct: 506 MAEDGRLLGAFAMIADITEVKQAHERL 532



 Score =  118 bits (296), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 37/311 (11%), Positives = 95/311 (30%), Gaps = 18/311 (5%)

Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLL 350
            ++ S E           S                D            G +  AN +F  
Sbjct: 2   TRSESNERGASAPEGTSRSERGESFIDPVCFKGLCDALGDGVVKTDVKGVILEANAAFCT 61

Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
           L  Y   D +    G + L   P+       + + L        +       +  +    
Sbjct: 62  LIGYAREDVL----GKTVLDFTPRSERARERESIRLLLKSGQS-SREMEKGLLTADG-RD 115

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470
           L +    + + ++    +   GI  +  + R  + +      +   + E  +D I  ++ 
Sbjct: 116 LLVQASCWLQHDESGRAVALWGIFRDITERRSAENRARDNQEKYRFLAENATDVIWTMDD 175

Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ------- 523
           +G     + +V ++ G+  E+++       +  ++          I +            
Sbjct: 176 KGRYTYVSPSVERIRGFAPEEMIGMYAQDAVCPDSMEETRKAWERIEAEAEAASDRSPSP 235

Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNKLSHAKKIAE 579
           T+        K+  ++    + ++L  +      +  T  DI+E K+ + +L  ++   +
Sbjct: 236 TVRVEVRLRKKDGSMIWGESMARRLRDAYGNPIGFIGTTRDITERKRIEERLRTSEHFLQ 295

Query: 580 KESSHKSDFLA 590
              +   D + 
Sbjct: 296 ALINATGDSVG 306


>gi|171914280|ref|ZP_02929750.1| sensory transduction histidine kinase [Verrucomicrobium spinosum
           DSM 4136]
          Length = 742

 Score =  383 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 116/749 (15%), Positives = 251/749 (33%), Gaps = 63/749 (8%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ-NTWYGKTTLW 150
            GY K ++    +T+G    +++                      +    NT   +    
Sbjct: 25  DGYFKRLNPAWERTLGYSTEELMAQPYRAFIHPDDFARTEAEAARINTGANTIAFENRYR 84

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
             +GT  Y  ++  A P     R+      F                +        + + 
Sbjct: 85  CKDGT--YRWLEWRARP--DMERQII----FAAARDTTRFKQLEDELRANSALQRAMLDG 136

Query: 211 KKGHSSVEKEKYDIFSQQSPPPHL---RMKNKVSSLTEYYAHKDDVLKTEKY-------- 259
                   +    I         L   +    +   +    H    +             
Sbjct: 137 ANLAIISCRPDGIIQGFNVGAEQLLGYKTAEVIGKNSPSIFHDPQEIARRAAFLTQELGY 196

Query: 260 ---------PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310
                                +  +   + ++         ++++S ++  YL   +  +
Sbjct: 197 PVEVGFQTFVAKALLGPPDENEWTYIRKDGSRIPVMLTVTIMRDDSGQTTGYLGIASDLT 256

Query: 311 LSAYFDEG----ENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365
                D      E      +D      F+    GN    N  F  L           AG 
Sbjct: 257 AKRQADRAQLELEARLQAILDNTTAVVFLKDREGNYQTVNRRFEELFHLTREQM---AGK 313

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
               +  P+ +         +  + +  +     L  I  +   +     + F   +   
Sbjct: 314 NDYDIFPPEFARAFRDNDAKVLATGQAMV-----LEEIAPHAGVAHTYVSVKFPVLDSEN 368

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
           + +   GI  +  D +  + ++     +L SILE   + I  ++ +G+I S N A +++F
Sbjct: 369 QIIALGGIATDITDRKRAEMELRDREARLSSILETAVEAIVTMDEKGLIQSINPAAAEIF 428

Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEI--LSLDLRQTLEKITLGSTKEEKLLSLRI 543
           GY   +I+ +  +V +        +     +       R    +  LG  K+  ++ L +
Sbjct: 429 GYQRGEIIGRNISVIVPAPNLLSPSLTSQNVPPAPDTERAGQSRELLGRRKDGSIVPLIL 488

Query: 544 IIKKLPFSSCYS--LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
            + +    +       MHDI+  K+ +  L        + +     F    SH+++ PL 
Sbjct: 489 SVSQTHTGNRVIYTAIMHDITMRKRFEEDL-------RRSNKELEQFAYIASHDLQEPLR 541

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
            I  + ++++ +  G L N    ++          + +++ DLL  S++  G       P
Sbjct: 542 MITSYLQLLERRYKGEL-NEEAGQFIATAVDGAARMRNLIQDLLSYSRV--GTQGRELAP 598

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF-TP 720
           VS  + +   +  +++   E   +I       +P I+AD   ++Q+  N++ NA+ F + 
Sbjct: 599 VSCGQLIQSVLGDLEVSIKECSAVITVE---TLPTIVADELQLRQVFQNLIGNALKFRSE 655

Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
              +I IS       E ++ +RD G+G+     E+    F ++    + +  GTG+GL L
Sbjct: 656 QTPRIHISAQPC-RGEWVISIRDNGIGIEPKFFERIFVIFQRLHA--REQYPGTGIGLAL 712

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            K +V+ + G+ ++ S+  KG       P
Sbjct: 713 CKRIVERHHGQIWVDSSTGKGATFFFSLP 741



 Score = 77.4 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 35/391 (8%), Positives = 103/391 (26%), Gaps = 34/391 (8%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ---------N 141
             G ++  +    + +G    ++IG     +               L ++          
Sbjct: 146 PDGIIQGFNVGAEQLLGYKTAEVIGKNSPSIFH--DPQEIARRAAFLTQELGYPVEVGFQ 203

Query: 142 TWYGKTTLWPIEG--------TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193
           T+  K  L P +             +P+ L    +   + + +G+ G  I          
Sbjct: 204 TFVAKALLGPPDENEWTYIRKDGSRIPVMLTVTIMRDDSGQTTGYLG--IASDLTAKRQA 261

Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL----RMKNKVSSLTEYYAH 249
                 L+ +   + +       ++  + +  +       L    R +    +  + +  
Sbjct: 262 DRAQLELEARLQAILDNTTAVVFLKDREGNYQTVNRRFEELFHLTREQMAGKNDYDIFPP 321

Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN---SKESFEYLSHR 306
           +      +    + +   ++  +E      +        F  L +               
Sbjct: 322 EFARAFRDNDAKVLATGQAMVLEEIAPHAGVAHTYVSVKFPVLDSENQIIALGGIATDIT 381

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGG 365
           +         + E      ++            G +   NP+   +  Y+  + I     
Sbjct: 382 DRKRAEMELRDREARLSSILETAVEAIVTMDEKGLIQSINPAAAEIFGYQRGEIIGRN-- 439

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
           +S ++ AP L   +      +  +  T  A  +R    +    + + +     +      
Sbjct: 440 ISVIVPAPNLLSPSLTSQ-NVPPAPDTERAGQSRELLGRRKDGSIVPLILSVSQT--HTG 496

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
             +    I  +    +  +  +     +L  
Sbjct: 497 NRVIYTAIMHDITMRKRFEEDLRRSNKELEQ 527



 Score = 74.7 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 43/131 (32%), Gaps = 2/131 (1%)

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
              L S  + + D + I   +G     N A  +  GY  E+++ +P+  F+  +  +   
Sbjct: 5   EADLKSFFDHSLDLMCIAGFDGYFKRLNPAWERTLGYSTEELMAQPYRAFIHPDDFARTE 64

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570
                I +     T+        K+     L    +             D + +KQ +++
Sbjct: 65  AEAARINTG--ANTIAFENRYRCKDGTYRWLEWRARPDMERQIIFAAARDTTRFKQLEDE 122

Query: 571 LSHAKKIAEKE 581
           L     +    
Sbjct: 123 LRANSALQRAM 133



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/384 (9%), Positives = 96/384 (25%), Gaps = 29/384 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWY 144
            +  D  G  + ++    +       +M G    D+          ++   +L       
Sbjct: 283 VFLKDREGNYQTVNRRFEELFHLTREQMAGKNDYDIFPPEFARAFRDNDAKVLATGQAMV 342

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            +         + YV +     P+     +     G  I              +  + + 
Sbjct: 343 LEEIAPHAGVAHTYVSVKF---PVLDSENQIIALGG--IATDITDRKRAEMELRDREARL 397

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHL-------RMKNKVSSLTEYYAHKDDVLKTE 257
           S + E          EK  I S       +        +   +S +          L ++
Sbjct: 398 SSILETAVEAIVTMDEKGLIQSINPAAAEIFGYQRGEIIGRNISVIVPAPNLLSPSLTSQ 457

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
             P     E +   +E                   Q ++     Y +  +  ++   F+E
Sbjct: 458 NVPPAPDTERAGQSRELLGRRKDGSI-VPLILSVSQTHTGNRVIYTAIMHDITMRKRFEE 516

Query: 318 GENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
               + + +++       +          S+L L + +   ++    G        +   
Sbjct: 517 DLRRSNKELEQFAY-IASHDLQEPLRMITSYLQLLERRYKGELNEEAG--------QFIA 567

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
                   +    +  ++  +R+ T             I     +        + +   +
Sbjct: 568 TAVDGAARMRNLIQDLLSY-SRVGTQGRELAPVSCGQLIQSVLGDLEVSIKECSAVITVE 626

Query: 438 VDTRINKRKMEIEVMQLCSILEAT 461
               I   ++     QL  + +  
Sbjct: 627 TLPTIVADEL-----QLRQVFQNL 645


>gi|21228983|ref|NP_634905.1| sensor histidine kinase/response regulator [Methanosarcina mazei
           Go1]
 gi|20907524|gb|AAM32577.1| Sensor histidine kinase/response regulator [Methanosarcina mazei
           Go1]
          Length = 854

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 117/514 (22%), Positives = 214/514 (41%), Gaps = 41/514 (7%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYK-------SVDDIE 361
                  +E + +     ++      +     +   N     +  +        S+    
Sbjct: 20  REAECDLEEKDRMYRALFEQSSDAVIISDGKKVLDINKKGCEIFGFGQKRPFNVSLMSFI 79

Query: 362 IAGGLSTLLDA--PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
            A  L  L  A        ++   +   + +   +     L  I         +      
Sbjct: 80  QAEYLPELQQAFKETFRQGSSNFEMRYQKPEGEIVDIKVNLSLIDRKDNIVQLVA----- 134

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI-ILSTN 478
                           +   ++  +R  +    +L +IL+ T  GI +I      I++ N
Sbjct: 135 ---------------QDITVSKNIERSEQENRERLKAILDNTLCGILLIESSSRKIINAN 179

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
               K  GY  ++++       ++Q+           +            ++  T   K 
Sbjct: 180 PIALKTAGYSDKELIGMTCYRLIDQHGEENCAAL--SLDQAGDLS----ESILLTATGKT 233

Query: 539 LSL--RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
           L +   ++   +  +  +  +  D+S+ KQ + +L  AK  AE  +   S+FLA +SHE+
Sbjct: 234 LPILRSVVPVSIGGTGYFVESFIDLSDRKQAEEELLQAKIAAESANRSMSEFLATMSHEL 293

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTPLTAIIGFSE++     G   +    ++   I  SG  +L ++N +LD+SKIE+GKM 
Sbjct: 294 RTPLTAIIGFSELMLGGSTGEF-DELNKKFLGNISTSGKHLLSLINSILDLSKIEAGKME 352

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716
           L  +  SL +  S   +++   A +K I +  +       + AD    KQI  N++SNA+
Sbjct: 353 LQSDYFSLQDIFSNTKNILSPLALKKNISMDFNVEPGF-FVYADRTRFKQIMYNLVSNAV 411

Query: 717 HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
            FT  GG + +    +    V + V DTG+G++  E+++  KPF QI ++   + EGTGL
Sbjct: 412 KFTQKGGSVEVLGIVSEKG-VRVSVSDTGIGISKDEIKQLFKPFKQIDSTLSRKYEGTGL 470

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           GL L+K  V+ + G+ ++ S P KG+      P+
Sbjct: 471 GLVLSKKFVEMHGGRIWVESEPGKGSTFTFEVPV 504



 Score = 70.4 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/154 (12%), Positives = 51/154 (33%), Gaps = 5/154 (3%)

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
                +E   V  R  +  +E +     ++ E +SD + I + +  +L  N+   ++FG+
Sbjct: 7   RRWTELENTLVLYREAECDLEEKDRMYRALFEQSSDAVIISDGK-KVLDINKKGCEIFGF 65

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
             +         F++      +     E                   E +++ +++ +  
Sbjct: 66  GQKRPFNVSLMSFIQAEYLPELQQAFKETFRQGSS---NFEMRYQKPEGEIVDIKVNLSL 122

Query: 548 LPFSSCYS-LTMHDISEWKQEKNKLSHAKKIAEK 580
           +        L   DI+  K  +      ++  + 
Sbjct: 123 IDRKDNIVQLVAQDITVSKNIERSEQENRERLKA 156


>gi|167644688|ref|YP_001682351.1| multi-sensor hybrid histidine kinase [Caulobacter sp. K31]
 gi|167347118|gb|ABZ69853.1| multi-sensor hybrid histidine kinase [Caulobacter sp. K31]
          Length = 882

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 114/620 (18%), Positives = 234/620 (37%), Gaps = 39/620 (6%)

Query: 221 KYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL--LTSEESSLPEQEDFHTI 278
             ++ +  +P      +  ++            +      L    S       +  +   
Sbjct: 17  AAEVMNTITPADISDPQELIARARALSDELATDITPGFEALVFKASRGIEDIYELTYIRK 76

Query: 279 NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP-----IPF 333
           +  ++        L++ +     YL      +     +E                     
Sbjct: 77  DGTRFPAVVSVTALRDVADAIIGYLLIGTDNTARKEAEEALLKAGALQSAIFNSANFSSI 136

Query: 334 FVYSHGNLFYANPSFLLLTKYKSVDDI----------EIAGGLSTLLDAPKLSDNNAIKP 383
              + G +   N     +  Y + + +                     + +L+       
Sbjct: 137 ATDAKGVIQIFNVGAERMLGYAASEVMNTITPADISDPQELVARARALSAELATPIEPGF 196

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
             L       I     L  I+ +     A+        +     +    I  ++   ++ 
Sbjct: 197 EALVFKASRGIEDIYELTYIRKDGTRFPAV-VSVTALRDAQGAIIGYLLIGTDNTARKLV 255

Query: 444 KRKMEIEVMQLC-------SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
           + + +    +L        S++E+  D +   +  GII   N+    L G   ++++  P
Sbjct: 256 EEEQKKSDQRLRDQQFYTRSLIESNIDALITTDPAGIITDVNKQTEALTGSTRDELIGAP 315

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCY 554
           F         +     +  +L        E        ++ ++S                
Sbjct: 316 FKDCFTDPDRA--EAAIRRVLGEKSLTDYELTVRSRDGKQTVVSYNATTFYDRGRTLQGV 373

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                D++E K+ + +L  AK  AE  S  KSDFLA +SHEIRTP+ A++G ++++    
Sbjct: 374 FAAARDVTERKRVEAELQQAKAAAESASRTKSDFLASMSHEIRTPMNAVMGIADLLAKTA 433

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
             P       +Y     RSG+ +L+++ND+LD+SK+E+ +++L     SL + + +AI +
Sbjct: 434 LTP----EQDKYVQIFRRSGDNLLNLINDILDLSKVEASQLDLEQTGFSLSDHLEKAIEM 489

Query: 675 VQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
           V   A EK +++ +  A ++   ++ D   ++Q+ LN+L NAI FT +G Q+ +     +
Sbjct: 490 VAPKAQEKGLILISEIAPDVSNDLVGDPTRLRQVLLNLLGNAIKFTQAG-QVSLKVERDA 548

Query: 734 NEEV----ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
           +  V       V DTG+G+   +L +  + F Q  +S   R  G+GLGL ++K +V+   
Sbjct: 549 DGSVPTALRFSVADTGIGIAGDKLARVFERFTQADSSTTRRFGGSGLGLTISKRLVELMG 608

Query: 790 GKFYIFSTPAKGTLIEIIFP 809
           G+  + ST  +G++     P
Sbjct: 609 GRIGVTSTLGQGSVFAFSVP 628



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/411 (7%), Positives = 90/411 (21%), Gaps = 70/411 (17%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK---------------- 138
           ++  +    + +G  A ++    +  ++     DP   I                     
Sbjct: 2   IQIFNVGAERMLGYTAAEV----MNTITPADISDPQELIARARALSDELATDITPGFEAL 57

Query: 139 -----RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193
                R      + T    +GT    P  ++   +        G+   G    N    + 
Sbjct: 58  VFKASRGIEDIYELTYIRKDGT--RFPAVVSVTALRDVADAIIGYLLIGT--DNTARKEA 113

Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF---SQQSPPPHLRMKNKVSSLTEYYAHK 250
                +     S +       S     K  I                  ++++T      
Sbjct: 114 EEALLKAGALQSAIFNSANFSSIATDAKGVIQIFNVGAERMLGYAASEVMNTITPADISD 173

Query: 251 DDVLKTEKYPLLTSEESSLPE-----------------QEDFHTINLNQYTKKQYFGTLQ 293
              L      L     + +                   +  +   +  ++        L+
Sbjct: 174 PQELVARARALSAELATPIEPGFEALVFKASRGIEDIYELTYIRKDGTRFPAVVSVTALR 233

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD------------KCPIPFFVYSHGNL 341
           +       YL      +     +E +  + + +                        G +
Sbjct: 234 DAQGAIIGYLLIGTDNTARKLVEEEQKKSDQRLRDQQFYTRSLIESNIDALITTDPAGII 293

Query: 342 FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401
              N     LT     + I                 + A   +     +++         
Sbjct: 294 TDVNKQTEALTGSTRDELIGAP------FKDCFTDPDRAEAAIRRVLGEKSLTDYEL--- 344

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
           T++        +++      ++            +  + +  + +++    
Sbjct: 345 TVRSRDGKQTVVSYNATTFYDRGRTLQGVFAAARDVTERKRVEAELQQAKA 395



 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/269 (8%), Positives = 59/269 (21%), Gaps = 34/269 (12%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK---------- 138
            DA G ++  +    + +G  A ++    +  ++     DP   +               
Sbjct: 138 TDAKGVIQIFNVGAERMLGYAASEV----MNTITPADISDPQELVARARALSAELATPIE 193

Query: 139 -----------RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187
                      R      + T    +GT    P  ++   +        G+   G  +  
Sbjct: 194 PGFEALVFKASRGIEDIYELTYIRKDGT--RFPAVVSVTALRDAQGAIIGYLLIGTDNTA 251

Query: 188 R-----VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ--QSPPPHLRMKNKV 240
           R              +        L E              I     Q+       ++++
Sbjct: 252 RKLVEEEQKKSDQRLRDQQFYTRSLIESNIDALITTDPAGIITDVNKQTEALTGSTRDEL 311

Query: 241 SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF 300
                     D          +  E+S    +    + +  Q        T  +  +   
Sbjct: 312 IGAPFKDCFTDPDRAEAAIRRVLGEKSLTDYELTVRSRDGKQTVVSYNATTFYDRGRTLQ 371

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKC 329
              +     +     +          +  
Sbjct: 372 GVFAAARDVTERKRVEAELQQAKAAAESA 400



 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/140 (12%), Positives = 34/140 (24%), Gaps = 5/140 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            D  G + +++++     G+   ++IG    D            I  +L  + +      
Sbjct: 287 TDPAGIITDVNKQTEALTGSTRDELIGAPFKDCFTDPD-RAEAAIRRVL-GEKSLTDYEL 344

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                     V +   A   Y R R   G   F             A  ++         
Sbjct: 345 TVRSRDGKQTV-VSYNATTFYDRGRTLQGV--FAAARDVTERKRVEAELQQAKAAAESAS 401

Query: 209 EIKKGHSSVEKEKYDIFSQQ 228
             K    +    +       
Sbjct: 402 RTKSDFLASMSHEIRTPMNA 421



 Score = 43.9 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 15/116 (12%), Positives = 32/116 (27%), Gaps = 18/116 (15%)

Query: 474 ILSTNRAVSKLFGYPVEDILRK-PFTVFLEQNTPSVMNHYLTEILSLDLRQTLE------ 526
           I   N    ++ GY   +++         +          L++ L+ D+    E      
Sbjct: 2   IQIFNVGAERMLGYTAAEVMNTITPADISDPQELIARARALSDELATDITPGFEALVFKA 61

Query: 527 -------KITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKL 571
                         K+       + +  L   +     Y L   D +  K+ +  L
Sbjct: 62  SRGIEDIYELTYIRKDGTRFPAVVSVTALRDVADAIIGYLLIGTDNTARKEAEEAL 117


>gi|298251062|ref|ZP_06974866.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
            racemifer DSM 44963]
 gi|297549066|gb|EFH82933.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
            racemifer DSM 44963]
          Length = 1095

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 110/767 (14%), Positives = 235/767 (30%), Gaps = 49/767 (6%)

Query: 55   TDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI 114
            TD +++         SE  +         +  W     G     ++           ++ 
Sbjct: 365  TDIDEQKQVEERIKASEENWRVLAETVP-QLVWTTRPDGLSDYFNQRFRDYTHATWEQLY 423

Query: 115  GMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNRE 174
            G            +          R+ T Y     +    T  Y      A+P+     +
Sbjct: 424  GYGWSQFLHPEDYERTLAERAHSFRRGTPYEVAYRFREGQTGCYRWFLARAMPVRDETGQ 483

Query: 175  FSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP---- 230
                + FG               K  +++F  L E         +               
Sbjct: 484  I--LKWFGTCTDIDEQKRTEQRLKESEERFQVLAETVPQLVWTTRPDGQFEYTNQHWCDY 541

Query: 231  ---PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287
                      ++ + L   +    + ++      L + +    E    H           
Sbjct: 542  TGLTLEQTQSDQWAQLPFIHPDDQEDIRARWQHALETGDMYEHEGLLKHAHTGEYRWFLT 601

Query: 288  YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNL-FYANP 346
                +++ + +  ++             +    +    +D  P   ++     L  Y N 
Sbjct: 602  RAMPVRDEAGQILKWCGTCTDIHDKKRAEAELRV---LIDAIPQHVWILGPDGLSEYGNQ 658

Query: 347  SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
             +   T        +  G    +    +      +       +         RL      
Sbjct: 659  RWCEYTGMT-YQQYQGDGWHQAIHPDDRQH---TLTLWRQTCAMGEPFEIEYRL--KHGQ 712

Query: 407  RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
                           ++  + +   G   +  + +  +  +     +   ++ ++  GI 
Sbjct: 713  TGTYRWFLGRALPVRDETGQILKWFGTCTDIEEQKRIEAALRESQERTSVLMNSSIIGIN 772

Query: 467  IINREG-IILSTNRAVSKLFGYPVEDILRKPFTVFL--EQNTPSVMNHYLTEILSLDLRQ 523
            I   EG  I+  N     + GY  ED+                        E+ +  L  
Sbjct: 773  I--AEGEQIVDANDTFLYMTGYTREDLRTGKINWMQMTPPEYLDRTVEAHQELAAKRLMT 830

Query: 524  TLEKITLGSTKEEKLLSLRI-IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES 582
              EK  +   K+   L + +  I            + D S  ++ + +            
Sbjct: 831  PYEKEYVC--KDGSRLPVLVGSIGLEHNPLQNIAFVLDNSARQELEQR------------ 876

Query: 583  SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
              K  F++  SHE+R PLTA+   + ++  Q    +         + +    N +  +V 
Sbjct: 877  --KDAFISMASHELRNPLTALKMQTSLLHRQL---VKQGLQAPALSSMQTQINKITRLVE 931

Query: 643  DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702
            DLLD+SKI++G++    E V LD  + E    +        IL+  +   ++   + D  
Sbjct: 932  DLLDVSKIQAGRLEYQQEIVDLDALLREIADTMLHTHPSHTILLHGTVGTSL---MGDRD 988

Query: 703  SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
             + Q+  N+LSNAI ++P    + +  + +    V + VRD G+G+   + +K    F +
Sbjct: 989  RLGQVFTNLLSNAIKYSPGAETVEMELSASEEA-VTILVRDHGLGIPREQRDKIFDRFYR 1047

Query: 763  IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            + + +Q    G G+GL +   +V  + G   + S   KG+  ++  P
Sbjct: 1048 VTDPKQKAIPGLGMGLYIVAEIVKHHGGTIMVESEMGKGSTFQVTLP 1094



 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 43/509 (8%), Positives = 118/509 (23%), Gaps = 32/509 (6%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQNTW 143
             W     GY+   ++      G    +  G      +               ++  + +
Sbjct: 267 LVWAGRPDGYVDFYNQRWRDYTGLSTEEAQGEGWMQCTHPEDRQRVLETWQRAVQTGSPY 326

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +  L     T  Y    + A P          +   G               K  ++ 
Sbjct: 327 EAEQRLRHCT-TGQYRWFLMQATPYRDARGTILKY--IGTCTDIDEQKQVEERIKASEEN 383

Query: 204 FSHLHEIKKGHSSVEKEKY--DIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
           +  L E         +     D F+Q+          ++           +  +      
Sbjct: 384 WRVLAETVPQLVWTTRPDGLSDYFNQRFRDYTHATWEQLYGYGWSQFLHPEDYERTLAER 443

Query: 262 LTSEESSLPEQEDFHTINLN---QYTKKQYFGTLQNNSKESFEYLSHRNHP----SLSAY 314
             S     P +  +                   +++ + +  ++                
Sbjct: 444 AHSFRRGTPYEVAYRFREGQTGCYRWFLARAMPVRDETGQILKWFGTCTDIDEQKRTEQR 503

Query: 315 FDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
             E E       +  P   +     G   Y N  +   T    ++  +           P
Sbjct: 504 LKESEERFQVLAETVPQLVWTTRPDGQFEYTNQHWCDYTGLT-LEQTQSDQWAQLPFIHP 562

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
              ++   +      +  T             +               ++  + +   G 
Sbjct: 563 DDQEDIRARW---QHALETGDMYEHEGLLKHAHTGEYRWFLTRAMPVRDEAGQILKWCGT 619

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
             +  D +  + +       L  +++A    + I+  +G+    N+   +  G   +   
Sbjct: 620 CTDIHDKKRAEAE-------LRVLIDAIPQHVWILGPDGLSEYGNQRWCEYTGMTYQQYQ 672

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE-EKLLSLRIIIKKLPFSS 552
              +   +  +          +  ++      E        +             +   +
Sbjct: 673 GDGWHQAIHPDDRQHTLTLWRQTCAMGEP--FEIEYRLKHGQTGTYRWFLGRALPVRDET 730

Query: 553 C----YSLTMHDISEWKQEKNKLSHAKKI 577
                +  T  DI E K+ +  L  +++ 
Sbjct: 731 GQILKWFGTCTDIEEQKRIEAALRESQER 759



 Score =  114 bits (285), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 38/515 (7%), Positives = 122/515 (23%), Gaps = 38/515 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D    +   ++             +G      +  L      H    +++         
Sbjct: 32  VDDVDTIVYANQCAQALTRASPEAFLGHSFWRGAPHLVSTALYHAMRTVRQTREPTEVEY 91

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH-- 206
           + P+  T L+V +                  G  +    + +         L++  +   
Sbjct: 92  ISPVTRTRLHVQLA-------------PTAGGLLLQFHEKQEPIRSQKTFFLEEHLTADV 138

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV------SSLTEYYAHKDDVLKTEKYP 260
           L  +  G   +  E   +   ++P    +++ +       +    +  +     +  +  
Sbjct: 139 LVNLYVGVGVLTPEGILLDINEAPLADTQIRREEVIGQPFTETPWWSFYPASQQQLREAI 198

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
              S+  ++  +   H         +      ++        +      +     +    
Sbjct: 199 TRASKGETVRFETVIHPREGMDLHLEATITPHRDVGHRVEYLVYVGTDITARKRAEAE-- 256

Query: 321 LTPETVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
                +D  P   +         + N  +   T   + +  +  G +             
Sbjct: 257 -LHALIDAIPQLVWAGRPDGYVDFYNQRWRDYTGLSTEEA-QGEGWMQCTHPED---RQR 311

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
            ++         +   A  RL                     +     +   G   +  +
Sbjct: 312 VLETWQRAVQTGSPYEAEQRLR--HCTTGQYRWFLMQATPYRDARGTILKYIGTCTDIDE 369

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
            +  + +++        + E     +     +G+    N+          E +    ++ 
Sbjct: 370 QKQVEERIKASEENWRVLAETVPQLVWTTRPDGLSDYFNQRFRDYTHATWEQLYGYGWSQ 429

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE-EKLLSLRIIIKKLPFSSC----Y 554
           FL                        E        +             +   +     +
Sbjct: 430 FLHPEDYERTLAERAHSFRRGTP--YEVAYRFREGQTGCYRWFLARAMPVRDETGQILKW 487

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
             T  DI E K+ + +L  +++  +  +      +
Sbjct: 488 FGTCTDIDEQKRTEQRLKESEERFQVLAETVPQLV 522



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/281 (13%), Positives = 73/281 (25%), Gaps = 36/281 (12%)

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIA 363
                          +     ++  P  FFV      + YAN     LT+      +  +
Sbjct: 1   MAGEEQTRRITAASRDTLLTILETLPDAFFVVDDVDTIVYANQCAQALTRASPEAFLGHS 60

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
                    P L        +   R  R                         P  +   
Sbjct: 61  FWRGA----PHLVSTALYHAMRTVRQTREPTEVE----------------YISPVTRTRL 100

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIE---VMQLCS-ILEATSDGIAIINREGIILSTNR 479
             +  P  G        +    + +        L + +L     G+ ++  EGI+L  N 
Sbjct: 101 HVQLAPTAGGLLLQFHEKQEPIRSQKTFFLEEHLTADVLVNLYVGVGVLTPEGILLDINE 160

Query: 480 AVSKLFGYPVEDILRKPF----TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
           A         E+++ +PF           +   +   +T        +T+   T+   +E
Sbjct: 161 APLADTQIRREEVIGQPFTETPWWSFYPASQQQLREAITRASKG---ETVRFETVIHPRE 217

Query: 536 EKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLS 572
              L L   I                  DI+  K+ + +L 
Sbjct: 218 GMDLHLEATITPHRDVGHRVEYLVYVGTDITARKRAEAELH 258


>gi|196232624|ref|ZP_03131476.1| PAS/PAC sensor signal transduction histidine kinase [Chthoniobacter
           flavus Ellin428]
 gi|196223386|gb|EDY17904.1| PAS/PAC sensor signal transduction histidine kinase [Chthoniobacter
           flavus Ellin428]
          Length = 375

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 106/364 (29%), Positives = 176/364 (48%), Gaps = 5/364 (1%)

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
             Q   +LEA  D + I+N+ G I+  N    KLFG+  E++L +P  + + Q       
Sbjct: 6   EEQFRELLEAAPDAMVIVNQAGEIVLVNSQTEKLFGFAREELLGRPIEILIPQRFRGHHP 65

Query: 511 HYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSCYSLT--MHDISEWKQ 566
            +          + +       G  K+     + I +  L       +T  + D ++ K+
Sbjct: 66  SHRDGYFGDPHVRPMGASMDLYGLRKDGTEFPVEISLSPLRTPEGLLVTSAIRDTTDRKR 125

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
            +  L       E+ +  K  FLA +SHE+RTPL  IIGF+E + + + GP+ N +  EY
Sbjct: 126 IERSLQEKNAELERANQAKDRFLASMSHELRTPLNGIIGFAEFLADGKPGPV-NGKQKEY 184

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
              I   G  +L ++ND+LD+ K+++GK+ LH     +++A+ E  + V+  A+ KRI +
Sbjct: 185 LEDILNGGRHLLHLINDMLDLVKVQAGKLELHLATFRIEDAIEEVCAGVRPLADNKRIGV 244

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
               A     I  D +  KQ+  N+LSNAI FT  GGQ+ +       +   L VRDTG+
Sbjct: 245 HVEIAPGFSPITHDEQRFKQVLYNLLSNAIKFTDDGGQVEVKVEQRGADRFCLSVRDTGI 304

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+   ++++    F Q+      R  GTGLGL L + +V+   G   + S   +G+   +
Sbjct: 305 GIKPEDIQRLFVEFEQLETGHARRFGGTGLGLALTRKIVELKGGTISVESAVGRGSTFSV 364

Query: 807 IFPL 810
             PL
Sbjct: 365 TLPL 368



 Score = 54.6 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/154 (11%), Positives = 38/154 (24%), Gaps = 34/154 (22%)

Query: 317 EGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL--------- 366
           + E    E ++  P     V   G +   N     L  +   + +     +         
Sbjct: 4   KAEEQFRELLEAAPDAMVIVNQAGEIVLVNSQTEKLFGFAREELLGRPIEILIPQRFRGH 63

Query: 367 -----STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                      P +    A   +   R D T       L  ++                 
Sbjct: 64  HPSHRDGYFGDPHVRPMGASMDLYGLRKDGTEFPVEISLSPLR----------------- 106

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
              PE +       +  D +  +R ++ +  +L 
Sbjct: 107 --TPEGLLVTSAIRDTTDRKRIERSLQEKNAELE 138



 Score = 41.2 bits (95), Expect = 0.79,   Method: Composition-based stats.
 Identities = 19/155 (12%), Positives = 46/155 (29%), Gaps = 19/155 (12%)

Query: 66  NYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS--- 122
             L +E  F              ++  G +  ++ +  K  G    +++G  +  +    
Sbjct: 1   MTLKAEEQFRELLEAAPDAMV-IVNQAGEIVLVNSQTEKLFGFAREELLGRPIEILIPQR 59

Query: 123 ----DILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGF 178
                  H D       +                +GT    P++++  P+ +        
Sbjct: 60  FRGHHPSHRDGYFGDPHVRPMGA--SMDLYGLRKDGT--EFPVEISLSPLRTPE------ 109

Query: 179 RGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
            G  +    R   D + + + L +K + L    + 
Sbjct: 110 -GLLVTSAIRDTTDRKRIERSLQEKNAELERANQA 143


>gi|298251695|ref|ZP_06975498.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297546287|gb|EFH80155.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 972

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 106/732 (14%), Positives = 226/732 (30%), Gaps = 40/732 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            W +   GY+   ++      G    +  G                    + +   T + 
Sbjct: 268 VWTMRPDGYIDYSNQRWLDYTGLSTEQAQGDGWIQCLHPDDQQRIGDAWQMSRETGTPFE 327

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
                    T  Y      A+P+  +  +    + FG               + L     
Sbjct: 328 TEQRLRHGTTGAYHWFLARAMPMRDKTGQII--KWFGTCTDIHDKKQAEDEIRVLVDAIP 385

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
           HL  IK+   S E        +               L   +      +       + + 
Sbjct: 386 HLVWIKRPDGSAEYANQR--WRDYTNMTAEQAQGDGWLHAIHPDDQQRVLEGWQRSVQTG 443

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT--- 322
                E    H                ++      ++             +     +   
Sbjct: 444 MPYEAELRMRHGTTGEYRWFLVRAMLHKDAQGTPLKWFGTCTDIDDRKRVEHQLKESWEN 503

Query: 323 -PETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
                +  P   +     G++ Y +  +   T       +          +     D++ 
Sbjct: 504 WRVLAETVPQFVWTTQPDGSVEYWSQRWYDYTGSSPEQALGQR------WNQFLHPDDDE 557

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
               +   +     +        +                 ++  + +   G   +  D 
Sbjct: 558 STLTIWRHALEAGESYEIEYRLKEGQTGEYRWFLTRGMPVRDETGQILKWFGTCTDIEDQ 617

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +  +  +     +   ++ +   GI +I  E  I+  N A   + GY  ED+  +     
Sbjct: 618 KRIETALRQSQERASILMNSNIIGINVIEGE-QIVDANDAFLHMTGYTREDLRARHMNWL 676

Query: 501 L--EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT- 557
                           E+ +       EK  +   K+   L + +    L      +++ 
Sbjct: 677 HMTAPEYLDRTCEAHQELAAQQSLTPYEKEYVC--KDGSRLPVLVGGVALEHHPRQAISY 734

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
           + D S  K+ + +              K  F++  SHE+R PL A+   +  + +++   
Sbjct: 735 VLDNSARKELEQR--------------KDAFISMASHELRNPLAALKLQA-TLLHRQLAR 779

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
            G        + +    N V  +V +LLD+SKI++G++    E V+LD  + E    +Q 
Sbjct: 780 QGLEASAPALSRMQTQINTVTRLVEELLDVSKIQAGRLEYIREAVNLDALLREVADTMQQ 839

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737
                 +++R         ++ D   + Q+  N+LSNAI ++P    + +  + T +  V
Sbjct: 840 IKTTHTVVVR---GATFCSLVGDKDRLGQVFTNLLSNAIKYSPDARTVEMELSATEDA-V 895

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
            +RVRD G+G+   + +K  + F +    +Q    G G+GL +   +V  + G   + S 
Sbjct: 896 TVRVRDHGLGIPQEQRDKIFERFYRAVGPRQPTIPGLGMGLYIVAEIVKGHGGTITVDSA 955

Query: 798 PAKGTLIEIIFP 809
             KG+   +  P
Sbjct: 956 AGKGSTFTVTLP 967



 Score =  113 bits (284), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 43/519 (8%), Positives = 125/519 (24%), Gaps = 47/519 (9%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + +D    +   +       G     ++G      +  L            K+      
Sbjct: 29  LFVLDDASTIIYANASAQALTGVAPETLVGNSFWRCAPQLVSTALYQAIQKTKQTRALTE 88

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
              + P+ G+     + +   P            G   +  + ++           +   
Sbjct: 89  VQYVSPVTGS----WLHVHLSPT----------AGGLTLQFHEMEAPAHRQEIVHQRGSL 134

Query: 206 HLH---EIKKGHSSVEKEK--YDIFSQQSPPPHLRMKNKVSSLTEYYA----HKDDVLKT 256
            +     ++ G + +  +    D+        H+R +  V +                + 
Sbjct: 135 SMDVLKNMRAGIAFLTPDGIVLDLNEVLLDDAHIRREEVVGNPLVEGPWCSSSPASQAQL 194

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
                  S   ++  +   H     + +         +        +      +     +
Sbjct: 195 RAAIARASMGETVRFETLVHPREGMELSLDVAITPHSDAEHHIEYLVLAGVDITTRKRAE 254

Query: 317 EGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
                    +D  P   +     G + Y+N  +L  T   +    +  G +  L    + 
Sbjct: 255 AE---LHALIDAIPQQVWTMRPDGYIDYSNQRWLDYTGLSTEQA-QGDGWIQCLHPDDQ- 309

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
                     + R   T      RL                     ++  + +   G   
Sbjct: 310 --QRIGDAWQMSRETGTPFETEQRLR--HGTTGAYHWFLARAMPMRDKTGQIIKWFGTCT 365

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
           +  D +  +        ++  +++A    + I   +G     N+          E     
Sbjct: 366 DIHDKKQAE-------DEIRVLVDAIPHLVWIKRPDGSAEYANQRWRDYTNMTAEQAQGD 418

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK-EEKLLSLRIIIKKLPFSSC- 553
            +   +  +    +       +   +    E           +     +       +   
Sbjct: 419 GWLHAIHPDDQQRVLEGWQRSVQTGMP--YEAELRMRHGTTGEYRWFLVRAMLHKDAQGT 476

Query: 554 ---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
              +  T  DI + K+ +++L  + +     +     F+
Sbjct: 477 PLKWFGTCTDIDDRKRVEHQLKESWENWRVLAETVPQFV 515



 Score = 88.5 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/381 (8%), Positives = 99/381 (25%), Gaps = 19/381 (4%)

Query: 197 GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256
            +  +   + L  +      ++     I++  S      +  +      ++     ++ T
Sbjct: 12  PESHETLLTILEALPGALFVLDDASTIIYANASAQALTGVAPETLVGNSFWRCAPQLVST 71

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
             Y  +   + +    E  +   +       +           F  +    H        
Sbjct: 72  ALYQAIQKTKQTRALTEVQYVSPVTGSWLHVHLSPTAGGLTLQFHEMEAPAHRQEI--VH 129

Query: 317 EGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
           +  +L+ + +        F+   G +   N   L     +  + +     +     +   
Sbjct: 130 QRGSLSMDVLKNMRAGIAFLTPDGIVLDLNEVLLDDAHIRREEVVGNPL-VEGPWCSSSP 188

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
           +    ++  +   S    +     +H         L++       ++             
Sbjct: 189 ASQAQLRAAIARASMGETVRFETLVHP---REGMELSLDVAITPHSDAEHHIEYLVLAGV 245

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
           +    +  + +       L ++++A    +  +  +G I  +N+      G   E     
Sbjct: 246 DITTRKRAEAE-------LHALIDAIPQQVWTMRPDGYIDYSNQRWLDYTGLSTEQAQGD 298

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-- 553
            +   L  +    +                E+     T              +   +   
Sbjct: 299 GWIQCLHPDDQQRIGDAWQMSRETGTPFETEQRLRHGT-TGAYHWFLARAMPMRDKTGQI 357

Query: 554 --YSLTMHDISEWKQEKNKLS 572
             +  T  DI + KQ ++++ 
Sbjct: 358 IKWFGTCTDIHDKKQAEDEIR 378



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/152 (11%), Positives = 40/152 (26%), Gaps = 5/152 (3%)

Query: 55  TDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI 114
           TD +          +S   +         +F W     G ++  S+      G+   + +
Sbjct: 485 TDIDDRKRVEHQLKESWENWRVLAETVP-QFVWTTQPDGSVEYWSQRWYDYTGSSPEQAL 543

Query: 115 GMRLCDVSDILHIDPNNHI-GDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNR 173
           G R          +    I    L+   ++           T  Y       +P+     
Sbjct: 544 GQRWNQFLHPDDDESTLTIWRHALEAGESYE-IEYRLKEGQTGEYRWFLTRGMPVRDETG 602

Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +    + FG               ++  ++ S
Sbjct: 603 QI--LKWFGTCTDIEDQKRIETALRQSQERAS 632


>gi|148657870|ref|YP_001278075.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp.
            RS-1]
 gi|148569980|gb|ABQ92125.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp.
            RS-1]
          Length = 1039

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 128/753 (16%), Positives = 266/753 (35%), Gaps = 60/753 (7%)

Query: 99   SEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP--IEGTN 156
             +   +        +       ++        +H    L+R   + G          GT 
Sbjct: 298  GQRFARADSYCTAVLESCTPVGINHAGQSAWRDHRCYALQRMEAYIGAPVRMRGVTVGTL 357

Query: 157  LYVPIDLAALPIYSRNREFSG--FRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214
             +        P    + +      +  G     +      A  +  +++F+ L  +    
Sbjct: 358  CFASATSRQTPFTDGDYDLIRLMAQWIG---SEQERLQTEAALRESEERFALLASVTTEG 414

Query: 215  SSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQED 274
              + ++   + +  +    L    +       +       + +    L +     P +  
Sbjct: 415  VIISEQGIIVDANAAASTLLGCPLEQLRGRSVFEFTTPEGREKVAHALATGYDC-PYEVL 473

Query: 275  FHTINLNQYTKKQYFGTLQ--NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP 332
               I+   +  +     +     +                A     E    +  +     
Sbjct: 474  ARRIDGTLFPAEVTGRNIPYHGRTARVTTIRDMSRQRLAEAALRASEERFRQLAENVNQV 533

Query: 333  FFVY--SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390
            F++   +   + Y NP++  +                 L +A  L D   +  +      
Sbjct: 534  FWICTPALDQILYVNPAYERIWGRSCDSLYAQPAS---LFEAIVLEDRERVLALHNAEYH 590

Query: 391  RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI- 449
            R      +    I+ +      +    F   N+         I  +    R  + ++   
Sbjct: 591  RGY----SIEFQIRRDDGQPRWILTRAFPVMNEAGVIYRIAAISEDVTGRRQAEEELRAT 646

Query: 450  -------------EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
                            ++ +IL+A+S+ IA++  +G  L+ NR    +FG   E  L   
Sbjct: 647  LAALEAQYQAADRAQSEMRAILDASSEAIALLAPDGTFLTVNRRFFDMFGTTAEQALGHR 706

Query: 497  FTVF---LEQNTPSVMNHYLTEILSLDLRQTLEKITLG-STKEEKLLSLRIIIKKLPFSS 552
             +     +          Y+    +L   QT+ +  +     +++ L++          +
Sbjct: 707  LSDMRAAIRWIFDDADELYVRMCHALQDTQTIFRERVSQRKPQQRELAIFSSPVWTANQT 766

Query: 553  --CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
                     D++  +  +                KS+F+A VSHE+RTPLT+I G+ +++
Sbjct: 767  HLGRLFVFRDVTHERAVE--------------RMKSEFVAMVSHELRTPLTSIKGYVDML 812

Query: 611  KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
             +   GPL +    E    +  + + +L ++NDLLD+S+IE+GK++LH  P+ L   + +
Sbjct: 813  LDGDAGPLADEHQ-ELLRIVKSNADRLLLLINDLLDMSRIEAGKLSLHRIPLDLRPLIRQ 871

Query: 671  AISLVQLYANEKRILIRTSFANNIPR-----ILADLRSVKQIALNILSNAIHFTPSGGQI 725
              + ++ + + K+  +        P      I  D     QI  N+LSNAI +TP  G++
Sbjct: 872  VAATMRPHLDAKQQRLTLDLPETPPDGSAPLIAGDAARFHQILTNLLSNAIKYTPPNGEM 931

Query: 726  IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
             I  T      + + V+DTG+GMT  E +     F +  N       GTGLGL + +++V
Sbjct: 932  TIRLTAEPP-WLCITVQDTGIGMTPEEQDHIFDRFYRARNRATRETGGTGLGLAITRSLV 990

Query: 786  DANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
            + + G+  + S P KG+   +  PL + +  HD
Sbjct: 991  ELHDGRITVESQPGKGSTFRVYVPLLEYADQHD 1023



 Score = 85.8 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/381 (9%), Positives = 92/381 (24%), Gaps = 36/381 (9%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           I   G + + +      +G    ++ G  + + +     +    +   L        +  
Sbjct: 417 ISEQGIIVDANAAASTLLGCPLEQLRGRSVFEFTTPEGREK---VAHALATGYDCPYEVL 473

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
              I+GT     +    +P + R    +       +          A  +  +++F  L 
Sbjct: 474 ARRIDGTLFPAEVTGRNIPYHGRTARVT------TIRDMSRQRLAEAALRASEERFRQLA 527

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL-----T 263
           E       +     D     +P           SL    A   + +  E    +      
Sbjct: 528 ENVNQVFWICTPALDQILYVNPAYERIWGRSCDSLYAQPASLFEAIVLEDRERVLALHNA 587

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL-- 321
                   +      +            + N +   +   +     +     +E      
Sbjct: 588 EYHRGYSIEFQIRRDDGQPRWILTRAFPVMNEAGVIYRIAAISEDVTGRRQAEEELRATL 647

Query: 322 ----------------TPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364
                               +D        +   G     N  F  +    +   +    
Sbjct: 648 AALEAQYQAADRAQSEMRAILDASSEAIALLAPDGTFLTVNRRFFDMFGTTAEQALGHRL 707

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
                       D + +   M +    T      R+   +  ++  LA+   P   ANQ 
Sbjct: 708 SDMRAAIRWIFDDADELYVRMCHALQDTQTIFRERVSQ-RKPQQRELAIFSSPVWTANQT 766

Query: 425 PENMPQNGIEPEDVDTRINKR 445
             ++ +  +  +    R  +R
Sbjct: 767 --HLGRLFVFRDVTHERAVER 785



 Score = 40.0 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 28/246 (11%), Positives = 67/246 (27%), Gaps = 15/246 (6%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDV-----SDILHIDP-NNHIGDLLKRQNTWY 144
             G    ++       G  A + +G RL D+           D     +   L+   T +
Sbjct: 680 PDGTFLTVNRRFFDMFGTTAEQALGHRLSDMRAAIRWIFDDADELYVRMCHALQDTQTIF 739

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            +              + + + P+++ N+   G      + V R     RA+ +   +  
Sbjct: 740 RERVSQRK---PQQRELAIFSSPVWTANQTHLGR-----LFVFRDVTHERAVERMKSEFV 791

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
           + +    +   +  K   D+       P      ++  + +  A +  +L  +   +   
Sbjct: 792 AMVSHELRTPLTSIKGYVDMLLDGDAGPLADEHQELLRIVKSNADRLLLLINDLLDMSRI 851

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG-ENLTP 323
           E   L        +               +  ++          P  SA    G      
Sbjct: 852 EAGKLSLHRIPLDLRPLIRQVAATMRPHLDAKQQRLTLDLPETPPDGSAPLIAGDAARFH 911

Query: 324 ETVDKC 329
           + +   
Sbjct: 912 QILTNL 917


>gi|73668585|ref|YP_304600.1| sensory transduction histidine kinase [Methanosarcina barkeri str.
           Fusaro]
 gi|72395747|gb|AAZ70020.1| sensory transduction histidine kinase [Methanosarcina barkeri str.
           Fusaro]
          Length = 1046

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 113/393 (28%), Positives = 198/393 (50%), Gaps = 10/393 (2%)

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
             ++            + + T  N+ K +    +L  IL++ S+ +  ++ E  I+  N+
Sbjct: 343 GDDELSRLSKGINQTLDRLRTTSNEFKAQEHEKKL--ILDSLSELVVFMDSELKIIWLNK 400

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
           A     G  + D++ + +         +     + ++L     +  E +    T++ K+ 
Sbjct: 401 AALDHMGMKINDVIGRHYQDMYILYKENPGKSPVLKVLESGNEEFGEVV----TQDGKIW 456

Query: 540 SLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
           ++  I  K           T  DI+  ++ + KL  AK  AE+ ++ KS+FLA VSHE+R
Sbjct: 457 TVTAIPIKNEDGRITGILKTGLDITAHRRSEEKLIQAKLEAEEANNSKSEFLANVSHELR 516

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TPL +IIGFS+++  + FG L N +   Y N I  SG  +L ++ND+LD+SK+E+GKM L
Sbjct: 517 TPLNSIIGFSDILIEKVFGEL-NEKQFRYVNNISTSGKHLLVLINDILDLSKVEAGKMEL 575

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
           H+   S+D    E  +++      K + +  +   +   + AD   + QI  N++SNAI 
Sbjct: 576 HYSEFSIDPVFEEVKAVLFPLIQAKPLEVTFNVEPDFTTLEADRGRLIQILYNLISNAIK 635

Query: 718 FTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
           FTP+GG++ +     S    ++ V DTG+G++  +  K  +PF Q+  S   +  GTGLG
Sbjct: 636 FTPNGGKVSVYCK-ESGNRALISVIDTGIGISAEDQVKLFQPFTQLDASTSRQYCGTGLG 694

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           L L K +V+ + G  ++ S P KG+      PL
Sbjct: 695 LALVKKIVNLHQGDIWVESDPGKGSNFTFALPL 727



 Score = 44.2 bits (103), Expect = 0.087,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 45/130 (34%), Gaps = 9/130 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTWYGKT 147
           +D+   +  +++     +G     +IG    D+  +   +P    +  +L+  N  +G+ 
Sbjct: 389 MDSELKIIWLNKAALDHMGMKINDVIGRHYQDMYILYKENPGKSPVLKVLESGNEEFGEV 448

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGF--RGFGIVHVNRVDNDPRALGKRLDKKFS 205
                +G        + A+PI + +   +G    G  I    R +          ++  +
Sbjct: 449 VT--QDGKIW----TVTAIPIKNEDGRITGILKTGLDITAHRRSEEKLIQAKLEAEEANN 502

Query: 206 HLHEIKKGHS 215
              E     S
Sbjct: 503 SKSEFLANVS 512


>gi|125973324|ref|YP_001037234.1| PAS/PAC sensor hybrid histidine kinase [Clostridium thermocellum
           ATCC 27405]
 gi|256005431|ref|ZP_05430394.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum DSM
           2360]
 gi|125713549|gb|ABN52041.1| PAS/PAC sensor hybrid histidine kinase [Clostridium thermocellum
           ATCC 27405]
 gi|255990571|gb|EEU00690.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum DSM
           2360]
 gi|316940443|gb|ADU74477.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum DSM
           1313]
          Length = 902

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 114/503 (22%), Positives = 199/503 (39%), Gaps = 23/503 (4%)

Query: 315 FDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
             E       T++       V    G +   N +   LT Y S + I        ++   
Sbjct: 148 LKEENERLLTTLESIGDGVIVTDKAGCVIMMNKAAQELTGYLSCNSIGKPLSEVFVIING 207

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
              +     P     S+R  +        +  +      ++       +   E M    +
Sbjct: 208 VNREPEPD-PYERVLSERKTVGLRKNTMLVSKDG-TLRYVSASTAPIKSSDREIMGVVVV 265

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
             +    R  + K++    +L   +E +   I + +  G I   N   +++ GY  +++ 
Sbjct: 266 FRDITRIRKAEEKLQ----KLSQAVEQSPGIIVMADTRGNIEYVNPRFTEVTGYSFDEVK 321

Query: 494 RKP-FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
            K  F + LE+N        +  + S    ++        +K   +         +  S 
Sbjct: 322 GKSLFFMELEENGEEKCKDMIQAVFSGKEWRS---EIRHKSKNNVVFWEYAYYSPIINSE 378

Query: 553 CYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                      DI+E K     L  AK+ AE  +  KS+FLA +SHEIRTPL  IIG + 
Sbjct: 379 GVVTNYLKVSEDITERKLMSENLFKAKEAAEAANRAKSEFLANMSHEIRTPLNGIIGMTN 438

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
           +               E  N ++    L+L ++ND+LD SKIE+GKM L          +
Sbjct: 439 LTLQTEL----TDEQRENLNIVNSCAELLLRVINDILDYSKIEAGKMTLENVKFDFFNLL 494

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQ--- 724
            +      + ANEK + +  +    IPRIL  D   ++Q+  N++SNA+ FT  G     
Sbjct: 495 EKTYKAHIVQANEKGLRLSYTVQKGIPRILVGDPGRLQQVLNNLISNAVKFTDIGEVRID 554

Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
           + I      + ++   V DTG+G+   ++    K F Q+ +S   +  GTGLGL ++K +
Sbjct: 555 VDIIEKRDDSVKLKFTVSDTGIGIDGDKMNMLFKSFSQVDSSITRKYGGTGLGLAISKQL 614

Query: 785 VDANMGKFYIFSTPAKGTLIEII 807
           V+   G+ ++ S   KG+     
Sbjct: 615 VEMMGGEIWVESQKGKGSTFYFT 637



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/238 (13%), Positives = 75/238 (31%), Gaps = 16/238 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH-------IDPNNHIGDLLKRQN 141
            D  G +  +++   +  G  +   IG  L +V  I++        DP   +    K   
Sbjct: 169 TDKAGCVIMMNKAAQELTGYLSCNSIGKPLSEVFVIINGVNREPEPDPYERVLSERKTVG 228

Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
                T L   +GT  Y  +  +  PI S +RE  G     +              ++L 
Sbjct: 229 -LRKNTMLVSKDGTLRY--VSASTAPIKSSDREIMGV--VVVFRDITRIRKAEEKLQKLS 283

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
           +       I     +  +   +  + +         ++V   + ++   ++  + +   +
Sbjct: 284 QAVEQSPGI--IVMADTRGNIEYVNPRFTEVTGYSFDEVKGKSLFFMELEENGEEKCKDM 341

Query: 262 LTSEESSLPEQEDFHT--INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
           + +  S    + +      N   + +  Y+  + N+      YL      +      E
Sbjct: 342 IQAVFSGKEWRSEIRHKSKNNVVFWEYAYYSPIINSEGVVTNYLKVSEDITERKLMSE 399



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/180 (10%), Positives = 49/180 (27%), Gaps = 8/180 (4%)

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
           L +     + +            ++++ +E    +      +     +E      + V++
Sbjct: 229 LRKNTMLVSKDGTLRYVSASTAPIKSSDREIMGVVVVFRDITRIRKAEEKLQKLSQAVEQ 288

Query: 329 CP-IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
            P I     + GN+ Y NP F  +T Y      +   G S      + +     K ++  
Sbjct: 289 SPGIIVMADTRGNIEYVNPRFTEVTGYS----FDEVKGKSLFFMELEENGEEKCKDMIQA 344

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
                   +  R  +                   N          +  +  + ++    +
Sbjct: 345 VFSGKEWRSEIRHKS---KNNVVFWEYAYYSPIINSEGVVTNYLKVSEDITERKLMSENL 401


>gi|298241186|ref|ZP_06964993.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
            racemifer DSM 44963]
 gi|297554240|gb|EFH88104.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
            racemifer DSM 44963]
          Length = 1221

 Score =  382 bits (981), Expect = e-103,   Method: Composition-based stats.
 Identities = 104/737 (14%), Positives = 238/737 (32%), Gaps = 46/737 (6%)

Query: 85   FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL-LKRQNTW 143
            F W     G +   ++ L   +     +  G                      ++    +
Sbjct: 514  FVWIAGPDGSITYNNQRLIDFLAMTHEQAEGAGWMAGVHPDDRQRVWEAWQTSIETGVPY 573

Query: 144  YGKTTLWPIEGT-NLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
              +      +GT   Y    +  +P  +       +   G               + L  
Sbjct: 574  --EVEHRLQDGTSGAYRWFLVRGVPQRNAQGTILHW--VGTCTDIHDKKQAEEELRALID 629

Query: 203  KFSHLHEI--KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
                L       G+     +++  ++  S             L   +      + +    
Sbjct: 630  AIPQLVWTGRPDGYRDSFNQRWRDYTGLSTEG----AQGEGWLQCLHPEDRQRVLSVWQR 685

Query: 261  LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
             + +      E    H               ++N S +  ++             ++   
Sbjct: 686  AVQTGGVYEIELRLRHGTTGEYRWFLARAMPVRNESGQILKWFGTSTDIEEQKRAEQQLK 745

Query: 321  LTPE----TVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
             + E      +  P   + ++ +G L Y N  +   T +   + ++           P  
Sbjct: 746  ESEENWRVLAETLPQFVWTMFPNGRLDYLNQRWCDYTGFTP-EHMQSDRWAHLQFIHPDD 804

Query: 376  SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
             + N                +  RL   Q        +        ++  + +   G   
Sbjct: 805  REGNRA-LWQQTLETGEPFESKHRLRNGQT--GAYRWVLARAMPVRDETGQIVKWFGTGT 861

Query: 436  EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
            +  D +  +  +     +   ++ +   GI +   +  I+  N +  ++ GY  ED+   
Sbjct: 862  DIEDQKRMEEALRQSQERASVLMNSNIIGIFLAEGD-QIVDANDSFLRMTGYTREDLRTG 920

Query: 496  PFTVFL--EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553
              +       +  +       E+ +    +  EK  L   K+     + +       +S 
Sbjct: 921  NMSWIRMTSPDYLARTRQAQQELDTQQYLEPYEKEYLC--KDGSCFPVLVGSVAFQHNSR 978

Query: 554  YSLTMH-DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
              ++   D S  K+ + +              K DF++  SHE+R PL A+   ++ +  
Sbjct: 979  QCISFVLDNSARKELEQR--------------KDDFISMASHELRNPLAALKMQTQ-LVR 1023

Query: 613  QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
            +R     +         ++     +  ++ +LLD+SKI++GK+    E V LD  + E  
Sbjct: 1024 KRLEKQSHHEAATALFRMEGPVKQLERLIGELLDVSKIQAGKLEYRQETVDLDALLHEVA 1083

Query: 673  SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
              +Q  +    I++R +  +++   + D   + Q+  N++SNAI ++P    + +    +
Sbjct: 1084 DTMQQLSTTHAIVVRGAAPSSL---VGDKDRLGQVFTNLISNAIKYSPGAEMVEMDLDAS 1140

Query: 733  SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
                 I+RV D G+G+   + +K  + F +    +Q    G G+GL +   +V  + G  
Sbjct: 1141 PE-TAIIRVHDHGLGIPQEQCDKIFERFYRATGPKQKAIPGLGMGLYIVAEIVKRHGGAI 1199

Query: 793  YIFSTPAKGTLIEIIFP 809
             + S   KG+   +  P
Sbjct: 1200 TVDSEVGKGSTFTVTLP 1216



 Score =  139 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 49/495 (9%), Positives = 124/495 (25%), Gaps = 33/495 (6%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD-ILHIDPNNHIGDLLKR---QNTWYGK 146
             G + +I++           +++G  L D+      +    H+   + R         +
Sbjct: 151 PDGLVLDINQRPLADAHLRREQVVGTPLTDLPAWSSDLVVQEHLRAAIARARQGEIVRFE 210

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
             + P   T+L + I +        +++       G               + L      
Sbjct: 211 ARIHPR--TDLSLDILMTITAHRDASQQIEYLICAG--RDITERKHAEDELRVLIDAIPQ 266

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
           L  + +      +E  +     S             L   +      +       + ++ 
Sbjct: 267 LVWMAR--PDGSREYSNRRWCDSTDMTAEQYQGDGWLQAIHPDDQQRILEVWQRAVQTDR 324

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE-- 324
               E    H                +++     ++             ++    + E  
Sbjct: 325 PYETELRLRHGTTGAYRWFLVRAMPYKDDQGTILKWFGTCTDIEEQKRAEQKLKESEENW 384

Query: 325 --TVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
               +  P   +  S  G++ Y N  +   +       +    G S  L    L   + +
Sbjct: 385 RVLAETVPQLVWTTSPDGSVEYWNQRWYDYSGSSPEHALGH--GWSQFLHPDDL--EHTL 440

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
                  +         RL   Q                 ++  + +   G   +  D +
Sbjct: 441 TVWHHALASGEAYEIEYRLRDDQT--GAYRWFLARGTPVRDEAGQIVKWFGTCTDIHDKK 498

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
             + +       L  +++A    + I   +G I   N+ +        E      +   +
Sbjct: 499 QAEAE-------LRVLIDAIPQFVWIAGPDGSITYNNQRLIDFLAMTHEQAEGAGWMAGV 551

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLT 557
             +    +       +   +   +E      T         +       +      +  T
Sbjct: 552 HPDDRQRVWEAWQTSIETGVPYEVEHRLQDGT-SGAYRWFLVRGVPQRNAQGTILHWVGT 610

Query: 558 MHDISEWKQEKNKLS 572
             DI + KQ + +L 
Sbjct: 611 CTDIHDKKQAEEELR 625



 Score =  127 bits (318), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 61/534 (11%), Positives = 139/534 (26%), Gaps = 46/534 (8%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMR-LCDVSDILHIDPNNHIGDLLKRQNTWY 144
            + +D    +   +            ++ G    C    ++       +    + +    
Sbjct: 29  VFVVDDTETIVYANASAQTLSRTTREEVCGTSLWCGAPHLVSPSLYQAVHKAKQTREP-T 87

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
               + P   +     + ++  P         G   F   H N      +    R ++ +
Sbjct: 88  EVEYVSPATNS----WLHVSLSPTD------EGLALF--FHKNLEPPHFQDALSRNEQMY 135

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQS---PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
             L E      ++      +           HLR +  V +           L  +++  
Sbjct: 136 RDLLESFSDGVTIVTPDGLVLDINQRPLADAHLRREQVVGTPLTDLPAWSSDLVVQEHLR 195

Query: 262 LTSEESSLPEQEDFH---TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
                +   E   F        +         T   ++ +  EYL               
Sbjct: 196 AAIARARQGEIVRFEARIHPRTDLSLDILMTITAHRDASQQIEYLICAGRDITER--KHA 253

Query: 319 ENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
           E+     +D  P   ++    G+  Y+N  +   T   + +  +  G L  +    +   
Sbjct: 254 EDELRVLIDAIPQLVWMARPDGSREYSNRRWCDSTDMTA-EQYQGDGWLQAIHPDDQQRI 312

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
               +     R+ +T       L                     +     +   G   + 
Sbjct: 313 LEVWQ-----RAVQTDRPYETELRLRHGTTGAYRWFLVRAMPYKDDQGTILKWFGTCTDI 367

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
            + +  ++K++        + E     +   + +G +   N+      G   E  L   +
Sbjct: 368 EEQKRAEQKLKESEENWRVLAETVPQLVWTTSPDGSVEYWNQRWYDYSGSSPEHALGHGW 427

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL-GSTKEEKLLSLRIIIKKLPFSSC--Y 554
           + FL  +            L+      +E       T   +    R    +        +
Sbjct: 428 SQFLHPDDLEHTLTVWHHALASGEAYEIEYRLRDDQTGAYRWFLARGTPVRDEAGQIVKW 487

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEK-------------ESSHKSDFLARVSHE 595
             T  DI + KQ + +L        +              +    DFLA ++HE
Sbjct: 488 FGTCTDIHDKKQAEAELRVLIDAIPQFVWIAGPDGSITYNNQRLIDFLA-MTHE 540



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/274 (13%), Positives = 85/274 (31%), Gaps = 22/274 (8%)

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIA 363
             N                  ++  P   F V     + YAN S   L++    +    +
Sbjct: 1   MSNAKQTKRVTPGSRETLLHMLETLPDAVFVVDDTETIVYANASAQTLSRTTREEVCGTS 60

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
                    P L   +  + V   +  R           +     + L ++  P ++   
Sbjct: 61  LWCGA----PHLVSPSLYQAVHKAKQTREPTEVE----YVSPATNSWLHVSLSPTDE--- 109

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
                       ++++    +  +         +LE+ SDG+ I+  +G++L  N+    
Sbjct: 110 -----GLALFFHKNLEPPHFQDALSRNEQMYRDLLESFSDGVTIVTPDGLVLDINQRPLA 164

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL-DLRQTLEKITLGSTKEEKLLSLR 542
                 E ++  P T     ++  V+  +L   ++     + +        + +  L + 
Sbjct: 165 DAHLRREQVVGTPLTDLPAWSSDLVVQEHLRAAIARARQGEIVRFEARIHPRTDLSLDIL 224

Query: 543 IIIKKLPFS----SCYSLTMHDISEWKQEKNKLS 572
           + I     +            DI+E K  +++L 
Sbjct: 225 MTITAHRDASQQIEYLICAGRDITERKHAEDELR 258



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/203 (13%), Positives = 59/203 (29%), Gaps = 32/203 (15%)

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
               L  +LE   D + +++    I+  N +   L     E++                +
Sbjct: 14  SRETLLHMLETLPDAVFVVDDTETIVYANASAQTLSRTTREEVCGTSLWCGAPHLVSPSL 73

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN 569
              + +         +E ++  +      L + +           +L  H   E    ++
Sbjct: 74  YQAVHKAKQTREPTEVEYVSPATN---SWLHVSLSPT----DEGLALFFHKNLEPPHFQD 126

Query: 570 KLSHAKKIAEKESSHKSDFLARV----------------SHEIR------TPLTAIIGFS 607
            LS  +++        SD +  V                +H +R      TPLT +  +S
Sbjct: 127 ALSRNEQMYRDLLESFSDGVTIVTPDGLVLDINQRPLADAH-LRREQVVGTPLTDLPAWS 185

Query: 608 EVI--KNQRFGPLGNPRYIEYAN 628
             +  +      +   R  E   
Sbjct: 186 SDLVVQEHLRAAIARARQGEIVR 208


>gi|300867388|ref|ZP_07112044.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300334639|emb|CBN57212.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 1120

 Score =  382 bits (981), Expect = e-103,   Method: Composition-based stats.
 Identities = 126/635 (19%), Positives = 240/635 (37%), Gaps = 27/635 (4%)

Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA 248
                 A G    +        +  +S+ E                R+ +    L     
Sbjct: 30  RVEIAEAGGSAEARVLLLAAHNELTNSAEEMASAK--PFDCAFLDYRLPDG-DGLKLVKT 86

Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL-QNNSKESFEYLSHRN 307
            ++  +K     L    +  +  +      +      K     L ++       Y +   
Sbjct: 87  IREAGIKIPLIVLTGQGDEQIAVELMKAGASDYIAKAKLSPENLSRSLQNAIRIYRAETK 146

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGL 366
               S    E E      ++      + +    N  Y N   L +      +       +
Sbjct: 147 ATQASQKLKESEERYRLVLEGANDGIWDWDLSKNEVYWNDRLLEIVGLSRSEF---GSAI 203

Query: 367 STLLDAPKLSDNNAIK-PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
               D     D  + +  +  +    T      RL     + +     T     + NQ  
Sbjct: 204 EAFFDRLHPEDYESTRKALEAHLETGTEYNVEFRLL---HSSDVYRYCTGRGKAQRNQQG 260

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
           + +   GI  +  D ++ +  +E E  QL  I+      +A+ ++E    + ++     +
Sbjct: 261 KALRMAGIISDISDRKLAEAALERERQQLRQIIACVPVPMAMFDKEMRYQAHSQRWLTQY 320

Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
               + IL + +   L  + P          L+ ++    E       ++   + LR  I
Sbjct: 321 NLEGQSILNRSYYEVL-PDIPDRWRKMHERSLTGEVVSVSED--AWKREDGSTVFLRWAI 377

Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
                       +  +S+      +L  A++ A + S  KS FLA +SHEIRTP+  ++G
Sbjct: 378 HPWYAPDGEVGGIVLVSDRIN---ELVEAREAAIEASRVKSQFLANMSHEIRTPMNGVLG 434

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
            ++++              EYA  I RS   +L ++ND+LD SKIE+G+M L      LD
Sbjct: 435 MAQLLLRLSLEAKP----REYAQTIYRSAEHLLSVINDILDFSKIEAGEMRLETLDFDLD 490

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQ 724
             +   + +V   A EK + +     +++P ++  D   +KQI LN+++NAI FT  G Q
Sbjct: 491 VCIESMVEMVVATAEEKGLELNVLIESSVPRQLQGDPGRLKQILLNLVNNAIKFTDRG-Q 549

Query: 725 IIISTTHTS---NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           +++  +  S   + ++I  VRD+G+G++    +K  + F Q+  S   +  GTGLGL + 
Sbjct: 550 VLVRVSLKSSTVDRKLIFSVRDSGIGISPEGQKKLFQSFSQVDGSPTRQYGGTGLGLVIC 609

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           K +V+   G+  + ++  KG+      PL     P
Sbjct: 610 KQLVEMMGGEIGVRTSVGKGSNFWFTIPLQMQPQP 644



 Score = 45.8 bits (107), Expect = 0.035,   Method: Composition-based stats.
 Identities = 20/246 (8%), Positives = 62/246 (25%), Gaps = 10/246 (4%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFK--MIGMRLCDVSDILHIDPNNHIGDL-LKRQNT 142
            W+ D        ++ L + +G    +         D       +      +  L+    
Sbjct: 172 IWDWDLSKNEVYWNDRLLEIVGLSRSEFGSAIEAFFDRLHPEDYESTRKALEAHLETGTE 231

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
           +  +  L     +++Y           ++  +    R  GI+          A  +R  +
Sbjct: 232 YNVEFRLLHS--SDVYRYCTGRGKAQRNQQGK--ALRMAGIISDISDRKLAEAALERERQ 287

Query: 203 KFSHLHEIKKGHSSVEKEKYDI-FSQQSPPPHLRMKNKVSSLTEYYAHKDDV--LKTEKY 259
           +   +        ++  ++       Q       ++ +      YY    D+     + +
Sbjct: 288 QLRQIIACVPVPMAMFDKEMRYQAHSQRWLTQYNLEGQSILNRSYYEVLPDIPDRWRKMH 347

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
               + E     ++ +   + +    +           E    +   +  +      E  
Sbjct: 348 ERSLTGEVVSVSEDAWKREDGSTVFLRWAIHPWYAPDGEVGGIVLVSDRINELVEAREAA 407

Query: 320 NLTPET 325
                 
Sbjct: 408 IEASRV 413


>gi|332703725|ref|ZP_08423813.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332553874|gb|EGJ50918.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 946

 Score =  382 bits (981), Expect = e-103,   Method: Composition-based stats.
 Identities = 149/775 (19%), Positives = 269/775 (34%), Gaps = 59/775 (7%)

Query: 74  FVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH-----ID 128
            VFD    T+R        G L+ I + L K       K +      V           D
Sbjct: 59  AVFDAKDATLRMVSK---EG-LRVIGQPLAKMQWQPREKTL--HAWKVLYPDGETPVPFD 112

Query: 129 PNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIY-SRNREFSGFRGFGIVHVN 187
               I  +     T   +      +G+   +P+ L A PI   R  E  G     +    
Sbjct: 113 ELPSIRTIRTGHVTVEEEYVFQRADGS--KIPVILNAGPIRGDREEEILGALISWL--DI 168

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLT 244
                     K  + +F    E      +    +                          
Sbjct: 169 SERKKLDEQLKTSEIRFRSTFEQAAVGMAHLDMEGRFLLVNRRLCEILGYSSDELTQRTL 228

Query: 245 EYYAHKDDVLKTEKY--PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302
               H +D+ K       L+  E      ++ +H  +             +N   E    
Sbjct: 229 REITHAEDLRKNLARIDQLMRGEIDRFSMEKRYHRKDGRIIWAMLTATLTRNEHGEPLFL 288

Query: 303 LSHRNHPSL----SAYFDEGENLTPETVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSV 357
           L+     +      A     E+L     +  P    VY    L  Y +P+  + T     
Sbjct: 289 LAVVEDITRRKQDEAELHRREDLFRTLAENSPDVISVYDRDLLRVYVSPAIEMETGLSRD 348

Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
           D +           A    +        + R+  T    +     +    +         
Sbjct: 349 DLVGKTLRGLQAESAVYTQEMVDSFEEGVRRTFETGEQVTVDFTYLTTAGKRKFHQ-LRM 407

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
               +   E      I  +    +  +  + I      +++E + DGI   +++   L  
Sbjct: 408 APLRSPDGEVRQVMSISRDMTALKETEADLHIREEHYRALVENSPDGIVRYDKDLRYLYV 467

Query: 478 NRAVSKLFGYPVEDILRKPFTVF-LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK-- 534
           N   +++ G P + I+     +  L       +   + E L+    Q+ E    G  +  
Sbjct: 468 NPCFARMTGLPAQAIVGNKLGILGLSLEMQQRVAGAVREALATGQEQSCEIAWEGPREIK 527

Query: 535 --EEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
             + + +     + +            DI++  Q        K+ AE+ +  KS+FLA +
Sbjct: 528 LIDIRFVP---EVGRDSEMKTVLAVSRDITDLAQA-------KQEAERANRAKSEFLASM 577

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHEIRTP+  IIG +E+   QR       +  +Y   + +S + +L I+ND+LD+SKIE+
Sbjct: 578 SHEIRTPMNGIIGLTELALMQR----PKAKVRDYLGMVKQSADSLLGIINDILDLSKIEA 633

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNI 711
           G++ L     S  E +      +++ A  K I   T     +P  +  D   ++QI +N+
Sbjct: 634 GRIELEKSFFSPREMLEGLFETMRIEAERKGITFSTKIDPRVPASLFGDEGRLRQIFVNL 693

Query: 712 LSNAIHFTPSGGQIIISTTHTSN------EEVIL--RVRDTGVGMTNYELEKAMKPFGQI 763
           +SNA+ FT +G  + +  T   +        V +   +RDTG+G+    LE   +PF   
Sbjct: 694 ISNALKFTEAGS-VSVQVTAEDHMDLAKPGPVEIIASIRDTGIGIPANRLESIFEPFDT- 751

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
             ++  R  GTGLGL + K ++D   G+  + S P KG+       + + + P +
Sbjct: 752 -GTRSTRHGGTGLGLTITKGLIDLMGGRITVKSRPGKGSTFSFSV-MLELAIPEE 804



 Score =  112 bits (279), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 31/323 (9%), Positives = 90/323 (27%), Gaps = 28/323 (8%)

Query: 281 NQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET---VDKCPIPFFVYS 337
            Q  K      L+    E       R       + +   +        +D  P    V+ 
Sbjct: 3   GQEHKDHIIENLRARLAEYERRDQERREAERGWWGESHLDALKVLKNVMDYLPEGMAVFD 62

Query: 338 HGNLFYANPSFLLLTKYKSVDDIEIA-------------GGLSTLLDAPKLSDNNAIKPV 384
                 A  + L +   + +  I                     L    +        P 
Sbjct: 63  ------AKDATLRMVSKEGLRVIGQPLAKMQWQPREKTLHAWKVLYPDGETPVPFDELPS 116

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
           +                  + +      +      + ++  E +       +  + +   
Sbjct: 117 IRTIRTGHVT-VEEEYVFQRADGSKIPVILNAGPIRGDREEEILGALISWLDISERKKLD 175

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            +++   ++  S  E  + G+A ++ EG  L  NR + ++ GY  +++ ++         
Sbjct: 176 EQLKTSEIRFRSTFEQAAVGMAHLDMEGRFLLVNRRLCEILGYSSDELTQRTLREITHAE 235

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHD 560
                   + +++  ++ +          K+ +++   +                  + D
Sbjct: 236 DLRKNLARIDQLMRGEIDR-FSMEKRYHRKDGRIIWAMLTATLTRNEHGEPLFLLAVVED 294

Query: 561 ISEWKQEKNKLSHAKKIAEKESS 583
           I+  KQ++ +L   + +    + 
Sbjct: 295 ITRRKQDEAELHRREDLFRTLAE 317


>gi|281417527|ref|ZP_06248547.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum
           JW20]
 gi|281408929|gb|EFB39187.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum
           JW20]
          Length = 902

 Score =  382 bits (981), Expect = e-103,   Method: Composition-based stats.
 Identities = 114/503 (22%), Positives = 199/503 (39%), Gaps = 23/503 (4%)

Query: 315 FDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
             E       T++       V    G +   N +   LT Y S + I        ++   
Sbjct: 148 LKEENERLLTTLESIGDGVIVTDKAGCVIMMNKAAQELTGYLSCNSIGKPLSEVFVIING 207

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
              +     P     S+R  +        +  +      ++       +   E M    +
Sbjct: 208 VNREPEPN-PYERVLSERKTVGLRKNTMLVSKDG-TLRYVSASTAPIKSSDREIMGVVVV 265

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
             +    R  + K++    +L   +E +   I + +  G I   N   +++ GY  +++ 
Sbjct: 266 FRDITRIRKAEEKLQ----KLSQAVEQSPGIIVMADTRGNIEYVNPRFTEVTGYSFDEVK 321

Query: 494 RKP-FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
            K  F + LE+N        +  + S    ++        +K   +         +  S 
Sbjct: 322 GKSLFFMELEENGEEKCKDMIQAVFSGKEWRS---EIRHKSKNNVVFWEYAYYSPIINSE 378

Query: 553 CYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                      DI+E K     L  AK+ AE  +  KS+FLA +SHEIRTPL  IIG + 
Sbjct: 379 GVVTNYLKVSEDITERKLMSENLFKAKEAAEAANRAKSEFLANMSHEIRTPLNGIIGMTN 438

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
           +               E  N ++    L+L ++ND+LD SKIE+GKM L          +
Sbjct: 439 LTLQTEL----TDEQRENLNIVNSCAELLLRVINDILDYSKIEAGKMTLENVKFDFFNLL 494

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQ--- 724
            +      + ANEK + +  +    IPRIL  D   ++Q+  N++SNA+ FT  G     
Sbjct: 495 EKTYKAHIVQANEKGLRLSYTVQKGIPRILVGDPGRLQQVLNNLISNAVKFTDIGEVRID 554

Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
           + I      + ++   V DTG+G+   ++    K F Q+ +S   +  GTGLGL ++K +
Sbjct: 555 VDIIEKRDDSVKLKFTVSDTGIGIDGDKMNMLFKSFSQVDSSITRKYGGTGLGLAISKQL 614

Query: 785 VDANMGKFYIFSTPAKGTLIEII 807
           V+   G+ ++ S   KG+     
Sbjct: 615 VEMMGGEIWVESQKGKGSTFYFT 637



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 78/237 (32%), Gaps = 14/237 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCD---VSDILHIDPNNHI-GDLLKRQNTW- 143
            D  G +  +++   +  G  +   IG  L +   + + ++ +P  +    +L  + T  
Sbjct: 169 TDKAGCVIMMNKAAQELTGYLSCNSIGKPLSEVFVIINGVNREPEPNPYERVLSERKTVG 228

Query: 144 -YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
               T L   +GT  Y  +  +  PI S +RE  G     +              ++L +
Sbjct: 229 LRKNTMLVSKDGTLRY--VSASTAPIKSSDREIMGV--VVVFRDITRIRKAEEKLQKLSQ 284

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
                  I     +  +   +  + +         ++V   + ++   ++  + +   ++
Sbjct: 285 AVEQSPGI--IVMADTRGNIEYVNPRFTEVTGYSFDEVKGKSLFFMELEENGEEKCKDMI 342

Query: 263 TSEESSLPEQEDFHT--INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
            +  S    + +      N   + +  Y+  + N+      YL      +      E
Sbjct: 343 QAVFSGKEWRSEIRHKSKNNVVFWEYAYYSPIINSEGVVTNYLKVSEDITERKLMSE 399



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/180 (10%), Positives = 49/180 (27%), Gaps = 8/180 (4%)

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
           L +     + +            ++++ +E    +      +     +E      + V++
Sbjct: 229 LRKNTMLVSKDGTLRYVSASTAPIKSSDREIMGVVVVFRDITRIRKAEEKLQKLSQAVEQ 288

Query: 329 CP-IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
            P I     + GN+ Y NP F  +T Y      +   G S      + +     K ++  
Sbjct: 289 SPGIIVMADTRGNIEYVNPRFTEVTGYS----FDEVKGKSLFFMELEENGEEKCKDMIQA 344

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
                   +  R  +                   N          +  +  + ++    +
Sbjct: 345 VFSGKEWRSEIRHKS---KNNVVFWEYAYYSPIINSEGVVTNYLKVSEDITERKLMSENL 401


>gi|189424781|ref|YP_001951958.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189421040|gb|ACD95438.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 1007

 Score =  382 bits (981), Expect = e-103,   Method: Composition-based stats.
 Identities = 114/508 (22%), Positives = 211/508 (41%), Gaps = 24/508 (4%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLS 367
                     E      +D  P    +     NL   N + L + +  S + ++     S
Sbjct: 357 IQREKALAASERFLNTVIDTEPECVKLLDADCNLLMMNRAGLGIIEADSFEQVQGQCVCS 416

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
            +    + +     + V L       I        I     + + +        +     
Sbjct: 417 LIAPPYQAAFRELTRQVFL------GIQGRLEFEAIGLKGRH-VWLETHAVPFHDDQGNI 469

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
               G+     + +  ++ ++ E     ++ E       I++ +  I+  NR   ++FGY
Sbjct: 470 TSLLGVTRNISERKQFEQAIKAERDHFQALFENDGSAHVIVSSDRRIVKVNRQFCEMFGY 529

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSL-DLRQTLEKITLGSTKEEKLLSLRIIIK 546
              ++L +     +        + +        D ++          K+  +        
Sbjct: 530 DEAELLGES--TLILHVDQKHYDEWAPNFRQALDSKEHFSAEFPWRRKDTSIFWCVFNGV 587

Query: 547 KLPFSSC---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
           +L   S       T+ DI+  KQ + +L  AK+ AE  +S KS FLA +SHEIRTP+  I
Sbjct: 588 RLELVSGDIVAVWTVIDITARKQAEQQLRSAKEAAEAANSAKSAFLANMSHEIRTPMNGI 647

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           IG + +++     P        Y   I+ S N +  +++D+LD+SKIESGK+ L +   S
Sbjct: 648 IGMTHLLQTTVITP----EQEHYLENIENSANSLTTLISDILDLSKIESGKLELEYSDFS 703

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSG 722
           L   + E ++  Q     K ++++T  A+N+P I   D    +QI LN++ NAI FT  G
Sbjct: 704 LRRCIRELLASQQFQIQHKELMVQTDIADNVPDILRGDQLRTRQILLNLIGNAIKFTEQG 763

Query: 723 GQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
             I I+    + ++    + L + DTG+GM+  ++++   PF Q  NS   +  G+GLGL
Sbjct: 764 S-IAITARLVAQQDDLALIRLSISDTGIGMSPQQVDRIFAPFEQADNSITRKYGGSGLGL 822

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEI 806
            + + +++   G+ +  ST   G+   I
Sbjct: 823 AICQRLIELMGGRIWAESTEGNGSSFHI 850



 Score = 48.1 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/253 (9%), Positives = 63/253 (24%), Gaps = 17/253 (6%)

Query: 89  IDAHGYLKEISEELPKTI-GNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
           +DA   L  ++      I  +   ++ G  +C +    +      +      +  + G  
Sbjct: 384 LDADCNLLMMNRAGLGIIEADSFEQVQGQCVCSLIAPPYQAAFREL-----TRQVFLGIQ 438

Query: 148 TLWPIEG---TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
                E       +V ++  A+P +      +   G  +              K     F
Sbjct: 439 GRLEFEAIGLKGRHVWLETHAVPFHDDQGNITSLLG--VTRNISERKQFEQAIKAERDHF 496

Query: 205 SHLHEIK--KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
             L E             +    ++Q        + ++   +    H D     E  P  
Sbjct: 497 QALFENDGSAHVIVSSDRRIVKVNRQFCEMFGYDEAELLGESTLILHVDQKHYDEWAPNF 556

Query: 263 TSEESS---LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
                S      +  +   + + +        L+  S +    +      +     ++  
Sbjct: 557 RQALDSKEHFSAEFPWRRKDTSIFWCVFNGVRLELVSGDIVA-VWTVIDITARKQAEQQL 615

Query: 320 NLTPETVDKCPIP 332
               E  +     
Sbjct: 616 RSAKEAAEAANSA 628



 Score = 46.2 bits (108), Expect = 0.024,   Method: Composition-based stats.
 Identities = 7/135 (5%), Positives = 36/135 (26%), Gaps = 9/135 (6%)

Query: 94  YLKEISEELPKTIGNYAFKMIGMRLCDVSDIL---HIDPNNHIGDLLKRQNTWYGKTTLW 150
            + +++ +  +  G    +++G     +  +    + +   +    L  +  +  +   W
Sbjct: 515 RIVKVNRQFCEMFGYDEAELLGES-TLILHVDQKHYDEWAPNFRQALDSKEHFSAE-FPW 572

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
             + T++        + +   + +         V             +   +     +  
Sbjct: 573 RRKDTSI-FWCVFNGVRLELVSGDIV---AVWTVIDITARKQAEQQLRSAKEAAEAANSA 628

Query: 211 KKGHSSVEKEKYDIF 225
           K    +    +    
Sbjct: 629 KSAFLANMSHEIRTP 643


>gi|294495111|ref|YP_003541604.1| multi-sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
 gi|292666110|gb|ADE35959.1| multi-sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
          Length = 793

 Score =  382 bits (981), Expect = e-103,   Method: Composition-based stats.
 Identities = 152/773 (19%), Positives = 277/773 (35%), Gaps = 73/773 (9%)

Query: 89  IDAHGY-----LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG----DLLKR 139
           +D +G        E++    K  G     +IG +  +V   +     + I       L  
Sbjct: 27  LDENGVPCDYEFLEVNAAFEKQTGLKCSDIIGKKATEVLPWIQDYSFDWIKFCGDIALNG 86

Query: 140 QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199
           ++    KT   P+          +    +YS  +       +  V +    +    +  R
Sbjct: 87  RD-EKNKTIFHPLS-----RWYKVH---VYSPEK-------YLFVTLYTDLSKDEEIFHR 130

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
           L+       +I   +       +   +  +         +     +           +  
Sbjct: 131 LNDNSQ---DIIFRYELSPVRGFTYVNNAAASIIGYTPEEYYDDPDMCLKIIHPDDRKLL 187

Query: 260 PLLTSEESSL--PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
                 +  L  P    +   N      +Q      + +             +     ++
Sbjct: 188 GDCVQGKIPLHKPIVLRYIHKNGQTVWIEQRNLPTYDTNGNLIALEGIGRDITERKQAED 247

Query: 318 -------GENLTPETVDK----CPIPFFVYSHGNLFYANPSFL-----LLTKYKSVDD-- 359
                   E+   E +       PI   +    NL    P F       +   +   D  
Sbjct: 248 NIYNGYVRESAINEILRLSFKDLPIERLLEKALNLILDIPDFELENAGAVFLVEDDADCL 307

Query: 360 -IEIAGGLSTLLDAPKLS---------DNNAIKPVMLYRSDRTCIAASAR--------LH 401
            ++ + GL+  L                  + + ++       C                
Sbjct: 308 VLKASHGLADPLLRKCARVPFGKCLCGRAASTEKMIFADRVDECHDIHYEGMKPHGHYCT 367

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC----SI 457
            +++  +    +     E      +           +   I ++K E ++        S+
Sbjct: 368 PLRFKNQTIGVLNLYVQEGHTYSAKLEQFLVSSANALSGIIARKKAEEDINHYAGMITSL 427

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
           L++  D I   + +G+ +  N A ++  G P E+I+ K      ++        +    L
Sbjct: 428 LDSIPDIIFFKDVKGVYMGCNPAFTEFVGRPREEIIGKTDYDLFDKAFADFFRKHDERTL 487

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM--HDISEWKQEKNKLSHAK 575
            L   +  E+        + LL +     + P      +     DI+E  + +  L   K
Sbjct: 488 ELLQPRHNEEWITYPDGRKILLDMLKTPYRGPDGLLIGILGIGRDITERNRAEQALLKGK 547

Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
            IAE+    KS+F+  +SHE+RTPL ++IGFS+V+  +  G L N    +Y + I +SG 
Sbjct: 548 LIAEENDRMKSEFITNMSHELRTPLNSVIGFSDVLLKEIKGEL-NDSQKKYISNISKSGR 606

Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695
            +L+++ND+LD+SKIE GKM L  E   L+  +SE  S+    A +K I ++   +  IP
Sbjct: 607 HLLELINDILDLSKIEEGKMELQCEDFDLNSILSEVESIFSPQAAKKDINLQFVLSEKIP 666

Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755
           RI  D   +KQ+  N+L+NAI FTP  G I +      +  + + V DTG+G+   +LE 
Sbjct: 667 RIKGDKIKIKQVIFNLLTNAIKFTPKNGAISVIAKENDDNIIEVSVSDTGIGIPEAKLED 726

Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
              PF Q+  S      GTG+GL LAK  V  + GKF + S   KG+      
Sbjct: 727 VFDPFIQVDASTSRNYGGTGVGLSLAKKFVQMHDGKFCVESEVYKGSTFTFTI 779


>gi|285018865|ref|YP_003376576.1| two-component system sensor-response regulator hybrid protein
            [Xanthomonas albilineans GPE PC73]
 gi|283474083|emb|CBA16584.1| putative two-component system sensor-response regulator hybrid
            protein [Xanthomonas albilineans]
          Length = 1619

 Score =  382 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 127/775 (16%), Positives = 261/775 (33%), Gaps = 66/775 (8%)

Query: 92   HGYLKEISEELPKTIGNYAFKMIGMRLCDVSD-ILHIDPNNHIGDLLKRQNTWYG-KTTL 149
             G +   +    +  G    + +G RLCD+      +D    +   + R       +T  
Sbjct: 362  DGVVTSWNRAAEQLFGYSQAQAVGQRLCDLIVSPELMDEEQSLLARIARGEHVPHFETLR 421

Query: 150  WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL--------- 200
               +G    + + ++A PIY+   +  G      +         RA    L         
Sbjct: 422  RHADGRL--LDVLVSASPIYNAAGKPVGAS--MTLRDVSDQKAARAQILALNATLESQVA 477

Query: 201  -------------DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247
                         +       E+    ++ +       +        R +  V  L    
Sbjct: 478  VRTAELSSSTAMLEGVLGAASEVSIIVTAHDGLVTLFNTGAERLLGYRREEVVGRLNAEA 537

Query: 248  AHKDDVLKTEKYPLLTSEESSLPEQEDFHT----------------INLNQYTKKQYFGT 291
             H  + + T    L       +     F                   N +          
Sbjct: 538  FHLPEEVSTRGKALSLELGMPVQGFRVFVEKAERDGAETREWTYVCRNGDTRQVSLVVTA 597

Query: 292  LQNNSKESFEYLSHRNHPSLSAYFDEGENLT----PETVDKCPIPFFVYSH-GNLFYANP 346
            ++ +      YL      S     +     +       +D    P   +   G +   N 
Sbjct: 598  IRTDQGNVTGYLGMALDISERQAAERLLARSTALTQAILDTAVNPIITFDAHGKVRSFNR 657

Query: 347  SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
            +   +  Y + + +  + G+        L +        +       +     +  ++ N
Sbjct: 658  AGERVFGYNAGEIVGQSVGMLMPEAHASLHEAMLTDVWQVGPEWPEGVDNGREMQALRKN 717

Query: 407  RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
             +       +     +         G+  +  +    +  +     QL     A   GI 
Sbjct: 718  GDAFPVEICLGTMWMDGE---CLMVGMIADITERHRQRMALTAARDQLKMATAAAELGIW 774

Query: 467  IINREGIILSTNRAVSKLFGYP----VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522
                    L  N  + +++G+P     +    + +   +  +        L + L     
Sbjct: 775  SWTLNDGALEWNERMFEIYGWPVELREQSPRYEDWQRMVHPDDLGFTEASLHKALEGSGV 834

Query: 523  QTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEK 580
                   L     ++ +      ++              DI+E  Q + +L  AK +A++
Sbjct: 835  YDPVFRILREDGTQRHIQGGAHTERDAHGQVIRVIGINRDITEQLQAEQELRQAKALADE 894

Query: 581  ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
             S  KS FLA +SHEIRTP+ A++G  ++++        + R  +Y     ++G  +L +
Sbjct: 895  ASQAKSSFLANMSHEIRTPMNAVLGMLQLLRRTAL----DARQADYVGKAQKAGTSLLSL 950

Query: 641  VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILA 699
            +ND+LD SKIE+GK+ L   P S++E + +   ++        + I      +IP  ++ 
Sbjct: 951  LNDILDYSKIEAGKLQLDLHPFSMEELLRDLSVVLSGNHQRPEVEIVYRLGRDIPDCLIG 1010

Query: 700  DLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVILRV--RDTGVGMTNYELEKA 756
            D   ++Q+ +N+  NA+ FT  G  ++ +   H   + V LRV   D+G+G++  + ++ 
Sbjct: 1011 DSLRLQQVLINLAGNALKFTEHGHVLLNVDLLHRQPQAVTLRVTVEDSGIGISAEQQQRI 1070

Query: 757  MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
               F Q   S   R  G+GLGL +++ +V    G+  + S   +G+      PL 
Sbjct: 1071 FHSFTQAEASTSRRFGGSGLGLVISRRLVGMMGGQLQLHSVLGEGSRFWFDLPLA 1125



 Score =  101 bits (252), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 59/453 (13%), Positives = 124/453 (27%), Gaps = 39/453 (8%)

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
            G      I G +L        L      REF G  GFG +   RV     A        
Sbjct: 67  RGLRGAVLIAGADLRSDQLRHYLQSRDLPREFPGAGGFGFIR--RVVQADEARFLAAQ-Y 123

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
            +   + +   +    +++ I    S         +  +    +            P L+
Sbjct: 124 ATGRQDSRIPLAPHAGDRFVIEYIDSSGNSAVQLGQDIASDPSWRAVAWAAALSGEPRLS 183

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
              +            L      +   T    +    E +     P L     +  NL  
Sbjct: 184 GPVTLAQASAQGAQAFLMLLPVYRSGLTPSTVALRQRELVGWTYVPLLMPKVMQALNLDA 243

Query: 324 ETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
           + ++             L  AN +   +                   +AP      A   
Sbjct: 244 KRIELA-----------LSDANAAGTAI---------------PFYRNAPHAPLAQAPHA 277

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
            +                          ++                       ++  R  
Sbjct: 278 FLGRTVMGRHWYMHMAAGGDFVAANALWSVGPAMITGMLLSALAAALAFALGNNLLRR-- 335

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL-E 502
            +++      L ++L++++D I     +G++ S NRA  +LFGY     + +     +  
Sbjct: 336 -QQIARNHANLIAVLQSSTDAIIGKTLDGVVTSWNRAAEQLFGYSQAQAVGQRLCDLIVS 394

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTM 558
                     L  I   +        TL    + +LL + +    +  ++      S+T+
Sbjct: 395 PELMDEEQSLLARIARGE--HVPHFETLRRHADGRLLDVLVSASPIYNAAGKPVGASMTL 452

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
            D+S+ K  + ++       E + + ++  L+ 
Sbjct: 453 RDVSDQKAARAQILALNATLESQVAVRTAELSS 485



 Score = 45.0 bits (105), Expect = 0.048,   Method: Composition-based stats.
 Identities = 28/259 (10%), Positives = 68/259 (26%), Gaps = 23/259 (8%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTWY---- 144
           DAHG ++  +    +  G  A +++G  +  +    H   +   + D+ +    W     
Sbjct: 647 DAHGKVRSFNRAGERVFGYNAGEIVGQSVGMLMPEAHASLHEAMLTDVWQVGPEWPEGVD 706

Query: 145 --GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
              +       G     P+++    ++            G++      +  R        
Sbjct: 707 NGREMQALRKNGDAF--PVEICLGTMWMDGECLM----VGMIADITERHRQRMALTAARD 760

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQS-------PPPHLRMKNKVSSLTEYYAHKDDVLK 255
           +        +                         P  LR ++      +   H DD L 
Sbjct: 761 QLKMATAAAELGIWSWTLNDGALEWNERMFEIYGWPVELREQSPRYEDWQRMVHPDD-LG 819

Query: 256 TEKYPLLTSEESSLPEQEDFHTI--NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
             +  L  + E S      F  +  +  Q   +    T ++   +    +      +   
Sbjct: 820 FTEASLHKALEGSGVYDPVFRILREDGTQRHIQGGAHTERDAHGQVIRVIGINRDITEQL 879

Query: 314 YFDEGENLTPETVDKCPIP 332
             ++         D+    
Sbjct: 880 QAEQELRQAKALADEASQA 898


>gi|67924012|ref|ZP_00517464.1| PAS [Crocosphaera watsonii WH 8501]
 gi|67854152|gb|EAM49459.1| PAS [Crocosphaera watsonii WH 8501]
          Length = 1068

 Score =  382 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 143/771 (18%), Positives = 265/771 (34%), Gaps = 71/771 (9%)

Query: 98  ISEELPKTIGNYAFKMIGM--RLCDVSDILHIDPNNHIG--DLLKRQNTWYGKTTLWPIE 153
            S    + +G    ++         +      +    I      K+ + +  +  L   +
Sbjct: 68  FSPRWKEMLGYSEQELPNHIDTWKQLLHPQDRERVMKILGDHFAKKTDHYSAEFRLKCQD 127

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH---EI 210
           G   Y  I      ++         R  G         + + L   L      L    + 
Sbjct: 128 GN--YKWILSRGQALWDEAGNPV--RMAGSHTDISDRKNEQILLTSLIDCIPDLVFYKDS 183

Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270
           K  +            +       R    +    E  A ++              E  + 
Sbjct: 184 KGVYKMCNNAFETFAGRDRKYIIGRNDFDLFLTEEALAFREQDRFMMLQKQSRRNEEWIT 243

Query: 271 -EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
               +   ++  +       G L      S +    +          E + L      + 
Sbjct: 244 YPNGNRRLVDTLKTPFCCPEGKLMGTIGISRDITDRKQKEEAIKKQAERDALLSNIARQL 303

Query: 330 -------PIPFFVYSHGNLFYANPSF---------------------------------L 349
                   + F + S G     + S+                                 L
Sbjct: 304 IDQDLNTAVNFVLESIGKFTQCDRSYIIRYFPQEKVWSMVHEWCDEYSPSTIHDSQNISL 363

Query: 350 LLTKYKSVDDIEIAGG-LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
            +  + S   IE     ++ L D P  +             +   +    R  T+ +   
Sbjct: 364 EVFPWFSQQLIEGKSICINKLDDFPSEATPEREAYKTSLSPNLLVVPMMTRCQTVGYLG- 422

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468
             +          +          +        I +        +   IL+  ++ I  I
Sbjct: 423 --IDTNVYKHWTKDDINLLKLVGELMAIAEARAIAEEAQSESQARFAGILDNANEAIISI 480

Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT---EILSLDLRQTL 525
           +    I   N A  + FGY   ++L +PF + +     +    Y+           +   
Sbjct: 481 DENQKITLFNHAAEQTFGYTSNEVLGQPFNLLIPSRFTNNHYQYINSFKNTQETARQMGG 540

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
            +   G  K+       + I K+       ++  + DI+E KQ +  L  AK+ A+  + 
Sbjct: 541 RRPVFGQRKDGTEFLAEVSISKIKPRGKTIFTAIIRDITERKQAEEALKKAKEKADAANC 600

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
            KS+FLA +SHE+RTPL AI+GF++V++  +     NP + +    I RSG  +L+++ND
Sbjct: 601 AKSEFLASMSHELRTPLNAILGFTQVMQRDQ---ELNPDHKQNLEIIGRSGEHLLELIND 657

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLR 702
           +L+++KIE+G+   +     L   +    S++ L A EK + +      N+P+ I  D  
Sbjct: 658 ILEMTKIEAGRTTFNRTQFDLYRLLDNLESMLHLKAEEKNLQLLFEKIENLPQYIETDES 717

Query: 703 SVKQIALNILSNAIHFTPSGGQI-IISTT--HTSNEEVI--LRVRDTGVGMTNYELEKAM 757
            ++Q+ +N+L NAI FT  GG I  I T      N+E+I    V DTG G+   E+++  
Sbjct: 718 KLRQVLINLLGNAIKFTQEGGVILRIKTNEMIGDNQEIILTFEVEDTGPGIAPEEVDQLF 777

Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           + FGQ    +    EGTGLGLP+++  V    G+  + S   +G+L     
Sbjct: 778 EAFGQTETGRNSN-EGTGLGLPISQKFVQLMGGEISVSSVLGRGSLFTFTI 827



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/307 (10%), Positives = 83/307 (27%), Gaps = 31/307 (10%)

Query: 315 FDEGENLTPETVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
             E E      +       + ++      + +P +  +  Y   +          LL   
Sbjct: 38  LRESEERWQLVLKGTNEGIWDWNLKTDEMFFSPRWKEMLGYSEQELPNHIDTWKQLLHPQ 97

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
                  I      +      A       ++    N   +        ++    +   G 
Sbjct: 98  DRERVMKILGDHFAKKTDHYSA----EFRLKCQDGNYKWILSRGQALWDEAGNPVRMAGS 153

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
             +  D +  +         L S+++   D +   + +G+    N A     G   + I+
Sbjct: 154 HTDISDRKNEQI-------LLTSLIDCIPDLVFYKDSKGVYKMCNNAFETFAGRDRKYII 206

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS- 552
            +                    ++     +  E+         +L+         P    
Sbjct: 207 GRNDFDLFLTEEALAFREQDRFMMLQKQSRRNEEWITYPNGNRRLVDTLKTPFCCPEGKL 266

Query: 553 -CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH-----EIRTPLT----A 602
                   DI++ KQ++         A K+ + +   L+ ++      ++ T +     +
Sbjct: 267 MGTIGISRDITDRKQKEE--------AIKKQAERDALLSNIARQLIDQDLNTAVNFVLES 318

Query: 603 IIGFSEV 609
           I  F++ 
Sbjct: 319 IGKFTQC 325



 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/134 (11%), Positives = 44/134 (32%), Gaps = 7/134 (5%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK--PFTVFL 501
           +  +     +   +L+ T++GI   N +   +  +    ++ GY  +++      +   L
Sbjct: 35  QENLRESEERWQLVLKGTNEGIWDWNLKTDEMFFSPRWKEMLGYSEQELPNHIDTWKQLL 94

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLT 557
                  +   L +  +               ++     +    + L   +      + +
Sbjct: 95  HPQDRERVMKILGDHFAKKTDH-YSAEFRLKCQDGNYKWILSRGQALWDEAGNPVRMAGS 153

Query: 558 MHDISEWKQEKNKL 571
             DIS+ K E+  L
Sbjct: 154 HTDISDRKNEQILL 167



 Score = 37.7 bits (86), Expect = 8.1,   Method: Composition-based stats.
 Identities = 27/309 (8%), Positives = 80/309 (25%), Gaps = 28/309 (9%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN----------NHIGDLLK 138
           ID +  +   +    +T G  + +++G     +      + +                + 
Sbjct: 480 IDENQKITLFNHAAEQTFGYTSNEVLGQPFNLLIPSRFTNNHYQYINSFKNTQETARQMG 539

Query: 139 RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
            +   +G+      +GT     + ++ +    +           I+             K
Sbjct: 540 GRRPVFGQ----RKDGTEFLAEVSISKIKPRGKT------IFTAIIRDITERKQAEEALK 589

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
           +  +K    +  K    +    +       +     ++  +   L   +    +++    
Sbjct: 590 KAKEKADAANCAKSEFLASMSHELRT-PLNAILGFTQVMQRDQELNPDHKQNLEIIGRSG 648

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
             LL      + +  +   I   + T  +    L          L  +          E 
Sbjct: 649 EHLL----ELINDILEMTKIEAGRTTFNRTQFDLYRLLDNLESMLHLKAEEKNLQLLFEK 704

Query: 319 ENLTPETVDKCPIP---FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
               P+ ++          +   GN         ++ + K+ + I     +    +    
Sbjct: 705 IENLPQYIETDESKLRQVLINLLGNAIKFTQEGGVILRIKTNEMIGDNQEIILTFEVEDT 764

Query: 376 SDNNAIKPV 384
               A + V
Sbjct: 765 GPGIAPEEV 773


>gi|302339340|ref|YP_003804546.1| PAS/PAC sensor hybrid histidine kinase [Spirochaeta smaragdinae DSM
           11293]
 gi|301636525|gb|ADK81952.1| PAS/PAC sensor hybrid histidine kinase [Spirochaeta smaragdinae DSM
           11293]
          Length = 753

 Score =  382 bits (980), Expect = e-103,   Method: Composition-based stats.
 Identities = 115/586 (19%), Positives = 224/586 (38%), Gaps = 46/586 (7%)

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE---- 301
                  +   E   L      +LP    F        T       +  +          
Sbjct: 51  EEEPPIILADIELPGLTQIIGRALPPVILFREKQQFPATPPPDAFAIIESDFSPEAFSSI 110

Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYK----- 355
             +   H +L   F        E ++      + +   GN+ Y + +      +      
Sbjct: 111 LQAASRHTTLLQSFIRERMNGREIINNLNDVVYTIDLKGNVVYISSAAERYGFFPRNIIG 170

Query: 356 -SVDDIEIAGGLSTLLDAPK--LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
            SV D+        L       +S+  A   + +  ++            +  +      
Sbjct: 171 KSVFDLIDREDHDYLRQQMNKLISERQATSLLRVTNAEGKTRQVRTSSRIVTQHGMPF-- 228

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG 472
                              G+  +  D    ++++     +L   +E +++ I I + EG
Sbjct: 229 ----------------SITGLLTDQTDQSFREQQIL----KLTQAVEQSANVIVITDLEG 268

Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
            +   NRA  +  GY  ++ + +   +         +   L E +S       E      
Sbjct: 269 NMEFVNRAFERSTGYGRQEAIGQNPRILKTDYLSEEVYKNLWETISSGN--VWEGKFHNK 326

Query: 533 TKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
            K+      + +I  +   +     +     DI++    + +L  AK++AE+ S  KS+F
Sbjct: 327 RKDGSTYWEKALISPIKNDAGTIINFVAVKEDITKELAYQQELEQAKEVAEEASRLKSEF 386

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
           LA +SHEIRTPL  I+GF++++ ++      + +  ++ + I  SG  +L+++ND+LD S
Sbjct: 387 LANMSHEIRTPLNVILGFTDLLLDE----TEDAKKRDHLHLIKDSGKNLLELINDILDFS 442

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIA 708
           KIE+ K++L  +       +     +  L A  K +         +P +L D   ++QI 
Sbjct: 443 KIEANKLDLEIDVFDPKALLQNIKGMFSLEAKRKGLDFTVEHDVPLPELLGDQYRIRQIL 502

Query: 709 LNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
           +N+LSNA+ FT  G  + +   + +   +   V DTG+G+     ++   PF Q+  S +
Sbjct: 503 MNLLSNAMKFTEVGS-VSLRAHYENTGIMRFSVSDTGIGIPEESRKQIFHPFEQLDGSAK 561

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
            +  GTGLGL + + +V    G   + S   +G+   I  PL  T+
Sbjct: 562 RKFSGTGLGLSITRRLVHLMGGNITLESKAGRGSTFTIELPLPTTT 607



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/138 (10%), Positives = 42/138 (30%), Gaps = 5/138 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147
            D  G ++ ++    ++ G    + IG     +      +    ++ + +   N W GK 
Sbjct: 264 TDLEGNMEFVNRAFERSTGYGRQEAIGQNPRILKTDYLSEEVYKNLWETISSGNVWEGKF 323

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                +G+  +    ++  PI +       F    +      +   +   ++  +     
Sbjct: 324 HNKRKDGSTYWEKALIS--PIKNDAGTIINF--VAVKEDITKELAYQQELEQAKEVAEEA 379

Query: 208 HEIKKGHSSVEKEKYDIF 225
             +K    +    +    
Sbjct: 380 SRLKSEFLANMSHEIRTP 397



 Score = 43.9 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 27/244 (11%), Positives = 70/244 (28%), Gaps = 10/244 (4%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + ID  G +  IS    +  G +   +IG  + D+ D    D      + L  +     
Sbjct: 142 VYTIDLKGNVVYISSAAERY-GFFPRNIIGKSVFDLIDREDHDYLRQQMNKLISERQATS 200

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
              +   EG    V      +  +      +G      +      +       +L +   
Sbjct: 201 LLRVTNAEGKTRQVRTSSRIVTQHGMPFSITGL-----LTDQTDQSFREQQILKLTQAVE 255

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
               +          ++   + +    + R   +           D + +     L  + 
Sbjct: 256 QSANVIVITDLEGNMEFVNRAFERSTGYGR--QEAIGQNPRILKTDYLSEEVYKNLWETI 313

Query: 266 ESSLPEQEDFH--TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
            S    +  FH    + + Y +K     ++N++     +++ +   +    + +      
Sbjct: 314 SSGNVWEGKFHNKRKDGSTYWEKALISPIKNDAGTIINFVAVKEDITKELAYQQELEQAK 373

Query: 324 ETVD 327
           E  +
Sbjct: 374 EVAE 377


>gi|254420304|ref|ZP_05034028.1| PAS fold family [Brevundimonas sp. BAL3]
 gi|196186481|gb|EDX81457.1| PAS fold family [Brevundimonas sp. BAL3]
          Length = 759

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 144/688 (20%), Positives = 253/688 (36%), Gaps = 59/688 (8%)

Query: 164 AALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYD 223
           A   +   +      +G            P+A G+RL+ +             V K    
Sbjct: 72  AGFSVIGADGAILASQGPVQSPGVLALTGPQAGGRRLEARILPSLPASGAVRIVSKTGVV 131

Query: 224 IFSQQSPPPHLRMKNKV-------SSLTEYYAHKDDVLKTEKYPLLTSEE--SSLPEQED 274
           + S  +          +       +SLT   A           P+        +L     
Sbjct: 132 LASPNAAEVGRSATPLIGVQAGDLASLTTPVATPGGRASVVAAPITPDGPYVVALQSGPP 191

Query: 275 FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF 334
                L           L      +            S  +   E      V+      +
Sbjct: 192 AGAAGLLGEAWVLAAPVLLGLGVLALFLFQGLRRARASREWASSEKRFRIAVEAARCGVW 251

Query: 335 VYSHGNLFYA-NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393
            +         +     L  +++   +     ++ +    +    +A++    Y +    
Sbjct: 252 EWDLDGAEVTLSDYMATLLGFETGGVVPAEAVMARIHPRYRDEVQHALRQATAYGAFEVT 311

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
                     +W      A        A          G+  +  + R  K   +    +
Sbjct: 312 FPVPGDGGRTRWIDARGQA------RGARGEAGFSAILGVALDITEARRAKAAAQSAESR 365

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
           L   +E+ SD   + +R+G ++  N+A    F +    +  +      E N  + +    
Sbjct: 366 LRDGVESISDAFVLFDRQGRLILWNQAFEDAFDFQSGVV--RRGAAKEELNRIAALAIKA 423

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH 573
               +       E        + + L L    ++        +T  DI+  K+E+ +   
Sbjct: 424 EHAPTDGRAGLREVEL----HDGRWLQLS---ERFTSEGGSVVTAADITAIKREETERRR 476

Query: 574 A----------------------------KKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
           A                               AE  +  KS+FLA +SHE+RTPL AI G
Sbjct: 477 AVEDLSRTVAQLEASQQMLSQLARKYEIAMTRAEAANQAKSEFLANMSHELRTPLNAING 536

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
           FSE++  + FGP+G  +Y  YA  I +SG  +L ++ND+LD++KIE+GKM LH+EPVSL 
Sbjct: 537 FSEIMAAELFGPIG-EKYKGYAGDILKSGQHLLSLINDILDMAKIEAGKMTLHYEPVSLR 595

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725
           +   +A  L++    E  + +    A ++P I AD R VKQ+ LN++SNA+ FTP GG +
Sbjct: 596 DVCEDAARLMRGKVLESGLTLEIE-AGDLPDIEADHRGVKQVMLNLISNAVKFTPEGGTV 654

Query: 726 IIST----THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
            +S          + V +   DTG+G+    + +  +PF Q+        +GTGLGL L 
Sbjct: 655 TLSLTPFKGAAGEDRVRVACADTGIGIAPEHMVRLARPFEQVEGQHSKTTQGTGLGLALT 714

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           K++++ + G+  I S P  GT++    P
Sbjct: 715 KSLIEMHGGRLNIESEPGVGTVVSFDLP 742



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/247 (7%), Positives = 58/247 (23%), Gaps = 4/247 (1%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            W  D  G    +S+ +   +G     ++      V   +H    + +   L++   +  
Sbjct: 250 VWEWDLDGAEVTLSDYMATLLGFETGGVV--PAEAVMARIHPRYRDEVQHALRQATAYGA 307

Query: 146 KTTLWPIEGTNLYV-PIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
               +P+ G       ID           E       G+          +A  +  + + 
Sbjct: 308 FEVTFPVPGDGGRTRWIDARGQA-RGARGEAGFSAILGVALDITEARRAKAAAQSAESRL 366

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
               E       +   +  +                         + + +         +
Sbjct: 367 RDGVESISDAFVLFDRQGRLILWNQAFEDAFDFQSGVVRRGAAKEELNRIAALAIKAEHA 426

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
                    +    +       + F +   +   + +  + +   +      E  + T  
Sbjct: 427 PTDGRAGLREVELHDGRWLQLSERFTSEGGSVVTAADITAIKREETERRRAVEDLSRTVA 486

Query: 325 TVDKCPI 331
            ++    
Sbjct: 487 QLEASQQ 493


>gi|39997412|ref|NP_953363.1| sensory box histidine kinase/response regulator [Geobacter
           sulfurreducens PCA]
 gi|39984303|gb|AAR35690.1| sensory box histidine kinase/response regulator [Geobacter
           sulfurreducens PCA]
          Length = 982

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 117/649 (18%), Positives = 229/649 (35%), Gaps = 52/649 (8%)

Query: 176 SGFRG-FGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL 234
           SG RG    +   R  N P     R  + F    +       ++   +    +   P  +
Sbjct: 79  SGIRGHITSLRPIRQANAPDNWETRALESFERGQQEYSSVELMDGVPHLRLMR---PLMV 135

Query: 235 RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294
                       Y+  D          L    +    +          +      G +  
Sbjct: 136 EQSCLRCHPGPSYSVGDVRGGISVSVPLAPYSALARNKMAATGAGHLTFWAAGLGGIILA 195

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKY 354
             + + +  S     +  A  +E   L  E          ++  G +   N  F  L  Y
Sbjct: 196 ARRITRDDRSLLLQQARLAESEERNRLLSEVAL---EGIVIHDRGIVQDMNARFAKLFGY 252

Query: 355 KSVDDIEIAGGLSTLLDAPKL--------SDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
              +++E    +S L     +          ++    V   + D T        + +Q  
Sbjct: 253 PR-EELEGINVISLLFHPDDIGSMIDKMSRAHSEPYQVRGVKKDGTVFDVEIEGYNLQHG 311

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
            ++   ++                     +  + R  +  +        ++ E  +    
Sbjct: 312 DKSVRVVSVR-------------------DITERRRAEEALRQSEALFRNLFEHHAAVKL 352

Query: 467 IINR-EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
           II+   G I+  N A    +G+  E +                    ++E+ +    + +
Sbjct: 353 IIDPVSGAIVDANNAAVSFYGWSREQLRAMNIRDI----NMLSPEELVSELENTKNMERI 408

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
                    ++ +  + +   ++           +HD++E K+ + +L  AK+ AE  + 
Sbjct: 409 HFFFRHRRADDSVRDVEVFSSRIEVKGREYLHSIVHDVTERKRAEEELLLAKEQAESANR 468

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
            KS+FLA +SHEIRTP+  +IG + ++               YA  +  S   +L +++D
Sbjct: 469 AKSEFLANMSHEIRTPMNGVIGMTGLLLETGLA----DEQRRYAEIVRTSAASLLQVIDD 524

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLR 702
           +LD SKIE+G++ +      L   + +    +   ANEK +         +PR ++ D  
Sbjct: 525 ILDFSKIEAGRLEMETIGFDLRTLLDDLAESLAFKANEKGLTFTCLLRPEVPRFLMGDPV 584

Query: 703 SVKQIALNILSNAIHFTPSGGQIIIS----TTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
            +KQ+ +N+  NA+ FT  G +I +     T    + ++   VRDTG+G+   + E   +
Sbjct: 585 RLKQVLVNLAGNALKFTHQG-EISVEVGSLTKTGDSVKLRFAVRDTGIGIPPEKTELLFE 643

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
            F Q   S   +  GTGLGL + K +V    G+  + S P  G+     
Sbjct: 644 KFTQADASITRKYGGTGLGLAICKRLVQMMGGEIGVTSRPGVGSEFWFT 692



 Score = 45.4 bits (106), Expect = 0.035,   Method: Composition-based stats.
 Identities = 35/293 (11%), Positives = 81/293 (27%), Gaps = 25/293 (8%)

Query: 98  ISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNL 157
           ++    K  G    ++ G+ +  +S + H D    + D + R ++   +      +GT  
Sbjct: 242 MNARFAKLFGYPREELEGINV--ISLLFHPDDIGSMIDKMSRAHSEPYQVRGVKKDGTVF 299

Query: 158 YVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSV 217
            V I+   L    ++           V             ++ +  F +L E       +
Sbjct: 300 DVEIEGYNLQHGDKSVRVV------SVRDITERRRAEEALRQSEALFRNLFEHHAAVKLI 353

Query: 218 EKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQED--- 274
                   +              S       +  D+       L++  E++   +     
Sbjct: 354 IDP--VSGAIVDANNAAVSFYGWSREQLRAMNIRDINMLSPEELVSELENTKNMERIHFF 411

Query: 275 FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF 334
           F     +   +     + +   K      S  +  +     +E   L  E  +       
Sbjct: 412 FRHRRADDSVRDVEVFSSRIEVKGREYLHSIVHDVTERKRAEEELLLAKEQAESAN---- 467

Query: 335 VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
                    A   FL    ++    +    G++ LL    L+D       ++ 
Sbjct: 468 --------RAKSEFLANMSHEIRTPMNGVIGMTGLLLETGLADEQRRYAEIVR 512


>gi|153871118|ref|ZP_02000369.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
 gi|152072417|gb|EDN69632.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
          Length = 866

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 106/386 (27%), Positives = 185/386 (47%), Gaps = 9/386 (2%)

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
                    +   + ++  +     +  +ILE    GI +I+  GII   N A  ++FGY
Sbjct: 176 ANIIEAYRINKQNQQSENALRDSESKNRAILETMIGGIVVIDSNGIIELFNPAAEEMFGY 235

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIII 545
              +++       + +   S  + YL   L+   R+ +   +  +   K+     + + +
Sbjct: 236 LAPEVIGYNVNRLMPEPYHSEHDQYLNNYLTTSQRKIIGIGREVVAKRKDGSFFPIELAV 295

Query: 546 KKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
            ++   +   +   + DI+E K  +  L  AK+ AE+ +  KS+FL  +SHE+RTPLT +
Sbjct: 296 SEMYEGNALKFVGRIIDITERKAAEFALIKAKEQAEESNRLKSEFLNVISHELRTPLTIM 355

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +G    +              + A  I+ SG  +L ++NDLLD+SKIE+GKM +  E +S
Sbjct: 356 LGNL-PLLTDPNDLPDAEEIADIATDIEDSGQHLLTLINDLLDLSKIEAGKMTIQQELLS 414

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
           +     + I+ +Q+ A+EK + I T   +    + AD   +KQI LN+L NAI FT +G 
Sbjct: 415 VAALTQDVITSIQVMAHEKNLTIETEIDD--IEVFADPIRLKQILLNLLGNAIKFTENGF 472

Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
            I +     ++ +V   V D G G+   ++      F Q  +S   R +GTGLGL + K 
Sbjct: 473 -IKVKIKPMAH-QVCFFVEDCGCGIDEKDVPFIFDAFRQSDSSAARRADGTGLGLAITKK 530

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFP 809
           +V+ + GK  + S   KG++     P
Sbjct: 531 LVELHNGKISVQSLLGKGSVFSFSIP 556



 Score = 40.8 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 27/214 (12%), Positives = 66/214 (30%), Gaps = 17/214 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD-ILHIDPNNHIGDLLKRQNTWY--- 144
           ID++G ++  +    +  G  A ++IG  +  +     H + + ++ + L          
Sbjct: 216 IDSNGIIELFNPAAEEMFGYLAPEVIGYNVNRLMPEPYHSEHDQYLNNYLTTSQRKIIGI 275

Query: 145 -GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +      +G+  + PI+LA   +Y        F G  I               +  ++
Sbjct: 276 GREVVAKRKDGS--FFPIELAVSEMY--EGNALKFVGRII--DITERKAAEFALIKAKEQ 329

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
               + +K    +V   +         P  + + N             + +      +  
Sbjct: 330 AEESNRLKSEFLNVISHELRT------PLTIMLGNLPLLTDPNDLPDAEEIADIATDIED 383

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297
           S +  L    D   ++  +  K      L + + 
Sbjct: 384 SGQHLLTLINDLLDLSKIEAGKMTIQQELLSVAA 417


>gi|296123006|ref|YP_003630784.1| PAS sensor protein [Planctomyces limnophilus DSM 3776]
 gi|296015346|gb|ADG68585.1| PAS sensor protein [Planctomyces limnophilus DSM 3776]
          Length = 1135

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 110/511 (21%), Positives = 204/511 (39%), Gaps = 22/511 (4%)

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGL 366
                    E E+     V+  P   F     G + +AN     +      + +      
Sbjct: 154 RQYAEQKLVESESFYRSLVETLPYAMFRKDLHGRVTFANRKLCEILGSPPNEVVGK---T 210

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
                   L+D              T          +  + E       +     +    
Sbjct: 211 DYDFFPTDLADKYRADD---RYVTETRAQFETIEEFVTPSGE-VHYTHVMKNPVYDGRGN 266

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
            +   GI  +  D +  +  ++ E   L +++++  D I   +  G  L  N+A +   G
Sbjct: 267 CVGIQGIFSDVTDRKRTEIALDQERDLLNNLMKSIPDNIYFKDVRGRYLRINQAKAAASG 326

Query: 487 YPVEDI-LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII- 544
                + + K  T F      ++       ++   L   + K       +  +  +    
Sbjct: 327 LSDPSLAIGKSDTDFFSAEHAAIARKDEEYVMQTRLP-LIGKEERVVWSDGHIRWMSTTK 385

Query: 545 ---IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
              I              DI+  K  +  L  AK  AE  +  KSDFLA +SHEIRTPL 
Sbjct: 386 LPLISPAGDVIGTYGVSRDITPMKLAEQALREAKDAAEAANRAKSDFLANMSHEIRTPLN 445

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           AIIG +E++ +            +Y   +  SG  +L I+ND+LD SKIE+G++++  +P
Sbjct: 446 AIIGMTELVMDTDLKVA----QRDYLRMVLESGESLLGIINDILDFSKIEAGRLHVDEQP 501

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTP 720
             L +++ + +  +   A+ K++ +    + ++P  +  D   V+Q+ +N+L NA+ FT 
Sbjct: 502 FRLRDSLGDTMKSLSNRAHRKKLELAFHVSPDVPDEVRGDAVRVRQVIINLLGNALKFTE 561

Query: 721 SGGQII-ISTTHTSNEEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
            G  ++ +S    + E+V    +V+DTG+G+   + E   + F Q  +S   R  GTGLG
Sbjct: 562 RGEVVLDVSVESRTAEQVTLHFKVQDTGIGIAKDKFESIFEAFEQADSSTTRRYGGTGLG 621

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           L ++  +V+   GK ++ S   +G+      
Sbjct: 622 LAISARLVELMQGKIWVESEVGQGSTFHFTL 652



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 17/155 (10%), Positives = 49/155 (31%), Gaps = 4/155 (2%)

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
             E +  +  ++K+        S++E     +   +  G +   NR + ++ G P  +++
Sbjct: 148 ISEVLKRQYAEQKLVESESFYRSLVETLPYAMFRKDLHGRVTFANRKLCEILGSPPNEVV 207

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS- 552
            K    F   +           +     +    +  +  + E     +          + 
Sbjct: 208 GKTDYDFFPTDLADKYRADDRYVTETRAQFETIEEFVTPSGEVHYTHVMKNPVYDGRGNC 267

Query: 553 -CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
                   D+++ K+ +  L   + +    +  KS
Sbjct: 268 VGIQGIFSDVTDRKRTEIALDQERDLLN--NLMKS 300



 Score = 76.2 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/278 (8%), Positives = 74/278 (26%), Gaps = 8/278 (2%)

Query: 60  ESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLC 119
              +    ++SE+ +            +  D HG +   + +L + +G+   +++G    
Sbjct: 154 RQYAEQKLVESESFYRSLVETLPYA-MFRKDLHGRVTFANRKLCEILGSPPNEVVGKTDY 212

Query: 120 DVSDILHIDPNNHIGD-LLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGF 178
           D       D        + + +  +          G   Y  +     P+Y       G 
Sbjct: 213 DFFPTDLADKYRADDRYVTETRAQFETIEEFVTPSGEVHYTHVMKN--PVYDGRGNCVGI 270

Query: 179 RG-FGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK 237
           +G F  V   +         + L                V      I   ++    L   
Sbjct: 271 QGIFSDVTDRKRTEIALDQERDLLNNLMKSIPDNIYFKDVRGRYLRINQAKAAASGLSDP 330

Query: 238 NKVSSLTEYY---AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294
           +     ++     A    + + ++  ++ +    + ++E     + +          L +
Sbjct: 331 SLAIGKSDTDFFSAEHAAIARKDEEYVMQTRLPLIGKEERVVWSDGHIRWMSTTKLPLIS 390

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP 332
            + +           +     ++      +  +     
Sbjct: 391 PAGDVIGTYGVSRDITPMKLAEQALREAKDAAEAANRA 428


>gi|223939410|ref|ZP_03631288.1| multi-sensor hybrid histidine kinase [bacterium Ellin514]
 gi|223891902|gb|EEF58385.1| multi-sensor hybrid histidine kinase [bacterium Ellin514]
          Length = 1436

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 126/711 (17%), Positives = 248/711 (34%), Gaps = 29/711 (4%)

Query: 115 GMRLCDVSDILHIDPNNHIGDLLK--RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172
           G    ++      D    +   +   +Q +   +   W        +  DL     ++  
Sbjct: 227 GDYAQEIPFTKAADETGDLARAIDVLKQGSAAMEEQRWVKAN-AAKITADLQGADSFADF 285

Query: 173 RE--FSGFR---GFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ 227
            +   SG     G G+  V   +  P  L +      +            E        +
Sbjct: 286 GQRLVSGLVPLLGGGVAAVYSFEEHPACLRRIAAYGLTEAGSGVDSFKPGEGLVGQCAQE 345

Query: 228 QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287
           + P     +      +            +    +       + E   FH+ +  + +  +
Sbjct: 346 RKPITLTDLPPGYLRIVSGLGTSVATQSSAFPLISAEALLGVIEFASFHSFSTQEQSLLK 405

Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANP 346
               +   + E  +   H           E        +D      + + + G + + N 
Sbjct: 406 ELLPVATMNLEILQRNLHTQELLEQVKTTEERTRL--ILDSADEGIYGMATDGQITFVNT 463

Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK-PVMLYRSDRTCIAASARLHTIQW 405
           +   +  +   + I            P  S     + P+                   + 
Sbjct: 464 ATCRMLGFAPEEMIGQKAHPLIHHHRPDGSPYPIEECPMRAACQAGEVRRVD-DEFLWRK 522

Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465
           +               +   + +       +  + +  + ++   +    ++LE+    +
Sbjct: 523 DGTGFPVEYATTPIVKD--GKILGAVVSFTDITERKRAQEELAYRLTFQRALLESIPYPM 580

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF--LEQNTPSVMNHYLTEILSLDLRQ 523
            + +     +S N+A  ++F    + +  K       L +      +   T ++    R+
Sbjct: 581 FVKDAHARFISCNKAYERVFNTMADFLKGKTVLDLEYLPEVDRRKFHDEDTAVIREASRR 640

Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKE 581
           + E     +          +   KL           + DIS+ K+   +L  AK  AE+ 
Sbjct: 641 SYELPIQYADGRTHTTLYSVDGFKLCDGSPGGLIGLLVDISDQKRVAEELRLAKAKAEEA 700

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
           +  KS FLA +SHEIRTP+ AIIG S +    +  P    +  +Y   +  +G  +L ++
Sbjct: 701 TQMKSMFLANMSHEIRTPMNAIIGLSHLALKTQLTP----KQRDYIGKVHNAGTSLLAVI 756

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILAD 700
           ND+LD SKIE+GK++L      LDE ++   +L    A+EK +         IP  +L D
Sbjct: 757 NDILDFSKIEAGKLDLEVVDFKLDEVITSVTTLTAQKAHEKGLEFLAHVTPGIPEFLLGD 816

Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDTGVGMTNYELEKA 756
              + QI  N ++NA+ FT  G +I ++           ++   VRDTG+GMT  +  K 
Sbjct: 817 PLRLGQILTNFVNNAVKFTERG-EIRLNIELIERTGEKLQLKFSVRDTGIGMTTEQAAKL 875

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
            +PF Q   S   +  GTGLGL + + +V+   G+ ++ S P  G+     
Sbjct: 876 FQPFTQADMSTTRKHGGTGLGLTICRRLVELMGGRIWLESEPGAGSTFYFT 926



 Score = 57.7 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 27/253 (10%), Positives = 59/253 (23%), Gaps = 28/253 (11%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN------HIGDLLKRQNTWY- 144
            G +  ++    + +G    +MIG +   +      D +        +    +       
Sbjct: 455 DGQITFVNTATCRMLGFAPEEMIGQKAHPLIHHHRPDGSPYPIEECPMRAACQAGEVRRV 514

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
               LW  +GT    P++ A  PI  ++ +  G                +          
Sbjct: 515 DDEFLWRKDGTGF--PVEYATTPIV-KDGKILGA--VVSFTDITERKRAQEELAYRLTFQ 569

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK-------------NKVSSLTEYYAHKD 251
             L E       V+       S       +                  +  +     H +
Sbjct: 570 RALLESIPYPMFVKDAHARFISCNKAYERVFNTMADFLKGKTVLDLEYLPEVDRRKFHDE 629

Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
           D     +    + E          HT   +    K   G+           +   +   +
Sbjct: 630 DTAVIREASRRSYELPIQYADGRTHTTLYSVDGFKLCDGSPGGLIGL---LVDISDQKRV 686

Query: 312 SAYFDEGENLTPE 324
           +      +    E
Sbjct: 687 AEELRLAKAKAEE 699


>gi|116753699|ref|YP_842817.1| multi-sensor hybrid histidine kinase [Methanosaeta thermophila PT]
 gi|116665150|gb|ABK14177.1| multi-sensor hybrid histidine kinase [Methanosaeta thermophila PT]
          Length = 1692

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 144/800 (18%), Positives = 283/800 (35%), Gaps = 93/800 (11%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH-----------IDPNNHIGDL- 136
            +DA G +   +  + +  G    +M+G      +   H           +  + HI  L 
Sbjct: 537  VDADGRVMAWNRAMEEMTGIQKSEMLGKGDFAYALPFHGCRRPMLIDLVMRYDEHIASLY 596

Query: 137  --LKRQNTWYGKTTLWPI--EGTNLYVPIDLAALPIYSRN----REFSGFRGFGIVHVNR 188
              L+R+          P    G   Y+ +  +  P+   +          R      +  
Sbjct: 597  ENLERRGDTLYAYVYVPSLYSGRGAYLWVKAS--PLKDSDGRIVGAIESMRDITESRIAE 654

Query: 189  VDNDPRA-----------LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK 237
            ++   R                 +   S ++E  +    +         +      L ++
Sbjct: 655  MELLRRDHLLAGSALAISSLLSGEDYESSINEAMQILGLISDVDRVYVFENHEEDELCLR 714

Query: 238  NKV----------------SSLTEYYAHKDDVLKTEKY--PLLTSEESSLPEQEDFHTIN 279
             +                  S + ++    +VL + K    L+     S+ E  + + + 
Sbjct: 715  FEWCRDGIRSWMDDQIFMGLSYSRFFPGWYEVLSSGKVIKGLVRDLPPSVKEILEPYGVL 774

Query: 280  LNQYTKKQYFGTLQN----------------NSKESFEYLSHRNHPSLSAYFDEGENLTP 323
                      G                             S            E   L  
Sbjct: 775  SILIVPITVGGRFWGFVGFDDTTYEREWSDAEISILVASASTIGEAVAKKDSIERMRLLE 834

Query: 324  ETVDKCPIPFFVYSHG------NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
              V        + +         + Y N +F  +T Y   + +             +  +
Sbjct: 835  SAVVNSNDAIVIAAPDPSDGMPKIIYVNSAFTRMTGYAREEVLGRYPDF------LEGPE 888

Query: 378  NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
             +  K + +  + R     +  L   + +      +    F   +   E      I+ + 
Sbjct: 889  TDRSKIMEILEAVRNAQPVNQELVNYRKDGSR-FWVELNIFPVRDHMGEVTHWVSIQRDT 947

Query: 438  VDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYP--VEDILR 494
             + R+ + ++    + + S+ E+   G  ++NR  G  L  N    +L G     ED+  
Sbjct: 948  TERRVAEDRLRWSELLMRSMTESIPFGFYVLNRATGKSLYLNHRFCELLGVEDLEEDLRC 1007

Query: 495  KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-- 552
                     +    M+    + L     +T E      T + +++ +     +       
Sbjct: 1008 GRLDGSALFSRIGSMHPDAGDSLREIYNRTDEAEIEIRTADGRVIKVFATDIRDKSGKYF 1067

Query: 553  CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
                   D+++  +   +L  AK+ AE+ +  K++FLA +SHEIRTPL AIIG S ++  
Sbjct: 1068 GRLGIFEDVTKDIKAAEELRKAKEAAEEAARSKAEFLANMSHEIRTPLNAIIGMSGLLLR 1127

Query: 613  QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
                P        Y + I  SGN +L+++ D+LD+S+IE GK+ L     S+ E V   I
Sbjct: 1128 TNVTP----EQRSYVSAIQSSGNALLEMLADILDLSRIEEGKLELDSSTFSILECVETCI 1183

Query: 673  SLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTT 730
             ++ + A+EK+I +      ++P  +L D   ++Q+ +N+L NAI FT  G   + +   
Sbjct: 1184 DILSVKASEKQIELAYLIDEDVPELVLGDATRLRQVLVNLLENAIKFTERGEVFLRVICQ 1243

Query: 731  HTSNE--EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
            +   +  E+   VRDTG+G+   ++++    F Q+ +S   R  GTGLGL ++K +V+  
Sbjct: 1244 YMDEDLSELHFFVRDTGIGIPPEKMDRLFHTFSQVDSSITRRYGGTGLGLAISKHLVEMM 1303

Query: 789  MGKFYIFSTPAKGTLIEIIF 808
             G+ +  S P  G+      
Sbjct: 1304 GGRIWAESIPGAGSTFHFTI 1323



 Score =  112 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 50/562 (8%), Positives = 145/562 (25%), Gaps = 76/562 (13%)

Query: 94  YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR------------QN 141
            + + +    + +G    ++  + L D+ +    + +  I   + R             +
Sbjct: 128 RILDANAVFQELLGYPPEEIHSLTLYDIMEQDREEIDEIIRHAMSRETESIQAYRTIDGS 187

Query: 142 TWYGKTTLWPIEGTN----------------LYVPIDLAALPIYSRN------------- 172
           +   K    P EG                      + LA + + +               
Sbjct: 188 SIQMKGRFSPTEGDGTLCVILSPPENHEDYIQKRDVLLAGVAMSANQLLTVDGFERSLMN 247

Query: 173 -----REFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ 227
                   +      +       ++     +          + +  +  + + +    + 
Sbjct: 248 ALEFLGSAADVDRVYVYQNTDSGDEAVLRFRWERGSVHARLDERIRYDVLPRWRERFLND 307

Query: 228 QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287
           +   P   +  ++                  +P+  ++         F      +  +  
Sbjct: 308 R---PVHGIVEEMPLQERELLKCRGARSVLIFPITIADRFWG-----FIGFEDCERERSW 359

Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANP 346
            +  +                          E    E V+        +   GN+ + N 
Sbjct: 360 SWNEISILMLGVASIGGAIARSVAEECLRRSEERYRELVESANSIILRLDRRGNVRFINE 419

Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
                  Y   + +      +     P++         M+    +        ++     
Sbjct: 420 FAQQFFGYSESEILGKCVMGT---LVPEVESTGRDLRGMIAEILKAPEDYRTNVNENMKK 476

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
               + + +     +++  E M    +  +  + R  K ++E     L  I+E   D   
Sbjct: 477 SGERVWIAWTNKTVSSESGE-MEILCVGNDITELRRAKERLESMNQWLLEIIEFLPDATL 535

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRK---PFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
           +++ +G +++ NRA+ ++ G    ++L K    + +        ++   +          
Sbjct: 536 VVDADGRVMAWNRAMEEMTGIQKSEMLGKGDFAYALPFHGCRRPMLIDLVMRYDEHIASL 595

Query: 524 TLEKITLGST------------KEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKN 569
                  G T                 L ++    K           +M DI+E +  + 
Sbjct: 596 YENLERRGDTLYAYVYVPSLYSGRGAYLWVKASPLKDSDGRIVGAIESMRDITESRIAEM 655

Query: 570 KLSHAKKIAEKESSHKSDFLAR 591
           +L     +    +   S  L+ 
Sbjct: 656 ELLRRDHLLAGSALAISSLLSG 677



 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 63/572 (11%), Positives = 152/572 (26%), Gaps = 83/572 (14%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL----HIDPNNHIGDLLKR-QNT 142
            +D  G ++ I+E   +  G    +++G  +             D    I ++LK  ++ 
Sbjct: 407 RLDRRGNVRFINEFAQQFFGYSESEILGKCVMGTLVPEVESTGRDLRGMIAEILKAPEDY 466

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
                      G    V I      + S + E        + +        +   + +++
Sbjct: 467 RTNVNENMKKSGE--RVWIAWTNKTVSSESGE---MEILCVGNDITELRRAKERLESMNQ 521

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSP-------------------------------- 230
               + E     + V      + +                                    
Sbjct: 522 WLLEIIEFLPDATLVVDADGRVMAWNRAMEEMTGIQKSEMLGKGDFAYALPFHGCRRPML 581

Query: 231 -PPHLRMKNKVSSLTEYYAHKDDVLKT-----------------EKYPLLTSEESSLPEQ 272
               +R    ++SL E    + D L                   +  PL  S+   +   
Sbjct: 582 IDLVMRYDEHIASLYENLERRGDTLYAYVYVPSLYSGRGAYLWVKASPLKDSDGRIVGAI 641

Query: 273 EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP 332
           E    I  ++  + +        +  +    S  +     +  +E   +     D   + 
Sbjct: 642 ESMRDITESRIAEMELLRRDHLLAGSALAISSLLSGEDYESSINEAMQILGLISDVDRVY 701

Query: 333 FFVYSHGNLFYANPSFLL--LTKYKSVDDIEI-------AGGLSTLLDAPKLSDNNAIKP 383
            F     +       +    +  +                G    L     +       P
Sbjct: 702 VFENHEEDELCLRFEWCRDGIRSWMDDQIFMGLSYSRFFPGWYEVLSSGKVIKGLVRDLP 761

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
             +          S  +  I         + F       ++ +      +          
Sbjct: 762 PSVKEILEPYGVLSILIVPITVGGRFWGFVGFDDTTYEREWSDAEISILVASASTIGEAV 821

Query: 444 KRKMEIEVMQ-LCSILEATSDGIAIINR---EG--IILSTNRAVSKLFGYPVEDILRKPF 497
            +K  IE M+ L S +  ++D I I      +G   I+  N A +++ GY  E++L +  
Sbjct: 822 AKKDSIERMRLLESAVVNSNDAIVIAAPDPSDGMPKIIYVNSAFTRMTGYAREEVLGRYP 881

Query: 498 TVFLEQN-TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--- 553
                     S +   L  + +    Q + +  +   K+     + + I  +        
Sbjct: 882 DFLEGPETDRSKIMEILEAVRN---AQPVNQELVNYRKDGSRFWVELNIFPVRDHMGEVT 938

Query: 554 -YSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
            +     D +E +  +++L  ++ +    +  
Sbjct: 939 HWVSIQRDTTERRVAEDRLRWSELLMRSMTES 970



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 69/235 (29%), Gaps = 29/235 (12%)

Query: 326 VDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
           +D      +V+   G + Y + +  +L+            G+S      ++   +  + +
Sbjct: 1   MDADQPAVYVFDEKGRIRYLSRTAEMLSG-----------GISKCRSIHEVLGVSCSESL 49

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
               +        AR+        +   +        +           +P        +
Sbjct: 50  ASAIASDAPSRIRARI------GCSGSEIPLSVIPLRDADGSRGLMIISDPSGSFREEGR 103

Query: 445 RKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
                E     + L+   + +  +  E   IL  N    +L GYP E+I        +EQ
Sbjct: 104 -----EERWYRTALDRCREAVFFVEAESRRILDANAVFQELLGYPPEEIHSLTLYDIMEQ 158

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM 558
           +        + EI+   + +  E I    T +   + ++             + +
Sbjct: 159 D-----REEIDEIIRHAMSRETESIQAYRTIDGSSIQMKGRFSPTEGDGTLCVIL 208


>gi|298506349|gb|ADI85072.1| sensor histidine kinase response regulator, PAS domain-containing,
           putative heme-binding site [Geobacter sulfurreducens
           KN400]
          Length = 982

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 117/649 (18%), Positives = 229/649 (35%), Gaps = 52/649 (8%)

Query: 176 SGFRG-FGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL 234
           SG RG    +   R  N P     R  + F    +       ++   +    +   P  +
Sbjct: 79  SGIRGHITSLRPIRQANAPDNWETRALESFERGQQEYSSVELMDGVPHLRLMR---PLMV 135

Query: 235 RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294
                       Y+  D          L    +    +          +      G +  
Sbjct: 136 EQSCLRCHPGPSYSVGDVRGGISVSVPLAPYSALARNKMAATGAGHLTFWAAGLGGIILA 195

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKY 354
             + + +  S     +  A  +E   L  E          ++  G +   N  F  L  Y
Sbjct: 196 ARRITRDDRSLLLQQARLAESEERNRLLSEVAL---EGIVIHDRGIVQDMNARFAKLFGY 252

Query: 355 KSVDDIEIAGGLSTLLDAPKL--------SDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
              +++E    +S L     +          ++    V   + D T        + +Q  
Sbjct: 253 PR-EELEGINVISLLFHPDDIGSMIDKMSRAHSEPYQVRGVKKDGTVFDVEIEGYNLQHG 311

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
            ++   ++                     +  + R  +  +        ++ E  +    
Sbjct: 312 DKSVRVVSVR-------------------DITERRRAEEALRQSEALFRNLFEHHAAVKL 352

Query: 467 IINR-EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
           II+   G I+  N A    +G+  E +                    ++E+ +    + +
Sbjct: 353 IIDPVSGAIVDANNAAVSFYGWSREQLRAMNIRDI----NMLSPEELVSELENAKNMERI 408

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
                    ++ +  + +   ++           +HD++E K+ + +L  AK+ AE  + 
Sbjct: 409 HFFFRHRRADDSVRDVEVFSSRIEVKGREYLHSIVHDVTERKRAEEELLLAKEQAESANR 468

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
            KS+FLA +SHEIRTP+  +IG + ++               YA  +  S   +L +++D
Sbjct: 469 AKSEFLANMSHEIRTPMNGVIGMTGLLLETGLA----DEQRRYAEIVRTSAASLLQVIDD 524

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLR 702
           +LD SKIE+G++ +      L   + +    +   ANEK +         +PR ++ D  
Sbjct: 525 ILDFSKIEAGRLEMETIGFDLRTLLDDLAESLAFKANEKGLTFTCLLRPEVPRFLMGDPV 584

Query: 703 SVKQIALNILSNAIHFTPSGGQIIIS----TTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
            +KQ+ +N+  NA+ FT  G +I +     T    + ++   VRDTG+G+   + E   +
Sbjct: 585 RLKQVLVNLAGNALKFTHQG-EISVEVGSLTKTGDSVKLRFAVRDTGIGIPPEKTELLFE 643

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
            F Q   S   +  GTGLGL + K +V    G+  + S P  G+     
Sbjct: 644 KFTQADASITRKYGGTGLGLAICKRLVQMMGGEIGVTSRPGVGSEFWFT 692



 Score = 46.2 bits (108), Expect = 0.023,   Method: Composition-based stats.
 Identities = 35/293 (11%), Positives = 81/293 (27%), Gaps = 25/293 (8%)

Query: 98  ISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNL 157
           ++    K  G    ++ G+ +  +S + H D    + D + R ++   +      +GT  
Sbjct: 242 MNARFAKLFGYPREELEGINV--ISLLFHPDDIGSMIDKMSRAHSEPYQVRGVKKDGTVF 299

Query: 158 YVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSV 217
            V I+   L    ++           V             ++ +  F +L E       +
Sbjct: 300 DVEIEGYNLQHGDKSVRVV------SVRDITERRRAEEALRQSEALFRNLFEHHAAVKLI 353

Query: 218 EKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQED--- 274
                   +              S       +  D+       L++  E++   +     
Sbjct: 354 IDP--VSGAIVDANNAAVSFYGWSREQLRAMNIRDINMLSPEELVSELENAKNMERIHFF 411

Query: 275 FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF 334
           F     +   +     + +   K      S  +  +     +E   L  E  +       
Sbjct: 412 FRHRRADDSVRDVEVFSSRIEVKGREYLHSIVHDVTERKRAEEELLLAKEQAESAN---- 467

Query: 335 VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
                    A   FL    ++    +    G++ LL    L+D       ++ 
Sbjct: 468 --------RAKSEFLANMSHEIRTPMNGVIGMTGLLLETGLADEQRRYAEIVR 512


>gi|220907215|ref|YP_002482526.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219863826|gb|ACL44165.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 1501

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 111/763 (14%), Positives = 241/763 (31%), Gaps = 43/763 (5%)

Query: 88   NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV--SDILHIDPNNHIGDLLKRQNTWYG 145
              D +     I+  + + IG    ++IG    ++   D         +  +       + 
Sbjct: 611  RYDRNLRYLYINPSIERIIGIPPEQLIGKTGIELGLIDPTSQAWYRTLEQVFNTGQHHWL 670

Query: 146  KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
            +      EG           +P      + +      +            L ++ +++  
Sbjct: 671  EFEFPNPEGEL--HAYQARFVPELVEGEQITTV--LAVATDVTEYKRTELLLRQSEERLR 726

Query: 206  HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA--------HKDDVLKTE 257
                  +  +                  +     V+      A           + +   
Sbjct: 727  LAMAAAQMATWDVDLNTGKAFWSEHHFTMLGYEPVAGGEASEAMWSSCIHPEDLERVLQA 786

Query: 258  KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP-SLSAYFD 316
                         E       N              + + ++   +          A   
Sbjct: 787  WQQARLDRTLYRAEYRVIRVDNGQIAWLMGLGSFTYDETGQAIRSIGVLLDISEQQAALQ 846

Query: 317  EGENLTPETVDKCPIPFFVYSHGNLFYA-----NPSFLLLTKYKSVDDIEIAGGLSTL-- 369
            E + +  E  +           G +                    +  +E       L  
Sbjct: 847  ERKRVEDELRESEQRLQLAQQAGRIGTWDWNLLTNEVSWSDGIWPLLALEPKSVKPDLET 906

Query: 370  LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
                   ++       +  +             I+ +      +            +   
Sbjct: 907  FTHFIHPEDREQAFRTVKLALAEGDDYYDEFRVIRQDGA-ICWLLSKGRVIRTPEGQPQR 965

Query: 430  QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
              GI  +  D +  +  +     +L   L  +  GI   +     ++ +  + +  G   
Sbjct: 966  LLGINVDITDRKQAEEALRQSEERLRLALLVSQSGIWDWDIVNKQITWSERIYQFHGLTP 1025

Query: 490  EDILRK--PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
            +        F   +       +   +   L+ +   + E           +  L      
Sbjct: 1026 DTFGGTVAEFAALIHPEDRERVAAAIQRALAGE--SSYELEFRAVQPSGAIRWLSTTGGV 1083

Query: 548  LPFSSC----YSLTMHDISEWKQEKNKL-------SHAKKIAEKESSHKSDFLARVSHEI 596
            +              +DI++ K  + +           ++ AE  +  K +FLA +SHE+
Sbjct: 1084 IFDQQGQPVRMLGATNDITDRKAIEAERERLLLSERRCREAAESANRIKDEFLAVLSHEL 1143

Query: 597  RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
            R+PL  I+G++++++ + F P    R  +    I+R+  L   ++ DLLDIS+I  GKM 
Sbjct: 1144 RSPLNPILGWTKLLQTRPFDP---QRTQQALQTIERNAKLQTQLIEDLLDISRILQGKMV 1200

Query: 657  LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716
            L+  PV+L   +  A+  V+L A  K I ++T  +  + R+  D   ++QI  N+L+NA+
Sbjct: 1201 LNTSPVNLITTIEAALDTVRLAAETKGIELQTCLSPAVGRVYGDSTRLQQIVWNLLTNAV 1260

Query: 717  HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
             FTP+GG+++I      +    ++V+DTG G++   L    + F Q  +    +  G GL
Sbjct: 1261 KFTPAGGKVLIRLEQVDS-FAQIQVQDTGKGISPAFLPHVFEYFRQEDSQTTRKFGGLGL 1319

Query: 777  GLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFPLYDTSHPHD 818
            GL + + + + + G   + S    +G    +  PL  +    D
Sbjct: 1320 GLAIVRYLTEQHGGTVEVESRGEDQGASFTVHLPLMASDLTPD 1362



 Score =  121 bits (303), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 57/588 (9%), Positives = 155/588 (26%), Gaps = 55/588 (9%)

Query: 43  NPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRF-TWNIDAH-GYLKEISE 100
           NP   + +      Q +    + +         F+ + R +       DA  G L   +E
Sbjct: 153 NPIAGTTKLEAECRQVETERQHLSEALLSEKARFEAVLRQLPEGVMIADAATGNLILTNE 212

Query: 101 ELPKTIGNYAFKMIGMRLCDVSDIL----------HIDPNNHIGDLLKRQNTWYGKTTLW 150
              + + +       +   +                 +    +  L + +   + +  L 
Sbjct: 213 RADQLMRHSYALDFQLEAYESWVPFQAYRTNGQRYAPEDYPLVRSLRQGEIIAHEEMELR 272

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
             +G+ +++ +   A PI     + +      +           A  ++   +       
Sbjct: 273 FADGSQIFIDV--NAAPILDYQGQIT--SAVTVFQDISERKQLEAERQQALIQLQERQHF 328

Query: 211 KKGHSSVEKEK---YDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL----- 262
            +  +         YD+ +Q++   + ++   +          DD L  +          
Sbjct: 329 IQQVADATPGTLYVYDMVAQRNIYVNRQIGELLGYTPADIQAYDDQLFAQLIHPEDLATI 388

Query: 263 ---------TSEESSLPEQEDFHTINLNQYTKKQYFG-TLQNNSKESFEYLSHRNHPSLS 312
                       +  +  +      N            + +     +   +      +  
Sbjct: 389 GNQYTRLNQAQADEVIDYEYRMRHANGEWRWLWSRNTVSTRTPEGLAHLVVGTVQDITDR 448

Query: 313 AYFDEGENLTPETVDKCPIPF-------------FVYSHGNLFYANPSFLLLTKYKSVDD 359
              +     T   + +    F             +      +      F  L  Y   + 
Sbjct: 449 KQAELALQQTQVHLQRANERFELAAKAVNCLIYDWDVEQDRVER-TEGFTRLLGYSLEEA 507

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
                     +    +   +A     L  +D        R      +      +      
Sbjct: 508 EPTGAWWRQQIHPEDVQRLSATAISNLLNNDLQICEYRVR----TKDNRYIYVLDQALVV 563

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
             +         G   +  D +  + +++ +  +  +++E T D I   +R    L  N 
Sbjct: 564 CRDAKGYPTRMVGSTTDITDRKRAEAQLQQQEQEFRTLVENTPDVIIRYDRNLRYLYINP 623

Query: 480 AVSKLFGYPVEDILRKP-FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
           ++ ++ G P E ++ K    + L   T       L ++ +      LE        E   
Sbjct: 624 SIERIIGIPPEQLIGKTGIELGLIDPTSQAWYRTLEQVFNTGQHHWLEFEFPNPEGELHA 683

Query: 539 LSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
              R + + +             D++E+K+ +  L  +++      + 
Sbjct: 684 YQARFVPELVEGEQITTVLAVATDVTEYKRTELLLRQSEERLRLAMAA 731



 Score = 75.8 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/282 (10%), Positives = 72/282 (25%), Gaps = 25/282 (8%)

Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIE--------IAGGLSTLLDAPKLSDNNAIKPV 384
             V+      + N  +  L        I            G   L    ++      +  
Sbjct: 56  VLVWGRDRYLFFNDGYANLGLNSGPTLIPGQPLHNCSQPNGGELLTAIEQVFTTAQPQQQ 115

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ-FPENMPQNGIEPEDVDTRIN 443
           +L     +         +  W+      +      + N        +      + + +  
Sbjct: 116 VLASQGMSGEQLWLWCFSPLWDGGQVGGVFATGCAELNPIAGTTKLEAECRQVETERQHL 175

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYP-------VEDILRK 495
              +  E  +  ++L    +G+ I +   G ++ TN    +L  +               
Sbjct: 176 SEALLSEKARFEAVLRQLPEGVMIADAATGNLILTNERADQLMRHSYALDFQLEAYESWV 235

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY- 554
           PF  +           Y              +       +   + + +    +       
Sbjct: 236 PFQAYRTNGQRYAPEDYPLVRSLRQGEIIAHEEMELRFADGSQIFIDVNAAPILDYQGQI 295

Query: 555 ---SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
                   DISE KQ + +    ++ A  +   +  F+ +V+
Sbjct: 296 TSAVTVFQDISERKQLEAE----RQQALIQLQERQHFIQQVA 333


>gi|118580477|ref|YP_901727.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
 gi|118503187|gb|ABK99669.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
          Length = 738

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 115/458 (25%), Positives = 198/458 (43%), Gaps = 12/458 (2%)

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ--WNRENSLAMTFI 416
            +E A  L     A         +       D      S      +          +   
Sbjct: 33  QLEEALQLMRRARAELQPTVTCTEAPFRAPKDGGMERCSTYDREYRTLLPDGKVRWINTQ 92

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476
                N      P  GI  +  D +     +     +  S++E + D +  IN +  I+ 
Sbjct: 93  GTTIPNPQGHGQPMTGISIDVSDRQRADDSLRRSEERYRSLVELSPDAVF-INLKNRIVF 151

Query: 477 TNRAVSKLFGY-PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
            N A  +LFG    + +L K     +  +   V+   + +  +  + Q +E+  L     
Sbjct: 152 VNPAAVRLFGAASAQQLLGKSPFDLMHPDCHDVIRARIEQQRAGQIAQLIEEKVLRLDSS 211

Query: 536 EKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
              + +          + + + + DIS+ K+ +  L+ AK+ AE  S  KS+FLA +SHE
Sbjct: 212 VIDVEVSAAPLNTEEGTAFQVILRDISDRKRAEQALATAKEQAEAASRAKSEFLANMSHE 271

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           IR+P+  I+G +++++             EY N I  S + +L ++N++LD+SKIE+GK+
Sbjct: 272 IRSPMNGIMGMAQLMEYTEL----TDEQREYLNVIRSSSHGLLSLINNILDLSKIEAGKI 327

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSN 714
            L     SL  ++ + +       ++K + IRT      P  ++ D   +KQI LN+L N
Sbjct: 328 ELERSDFSLRASIDDIVKAHLSQIHDKGLTIRTDIPAAAPDTLIGDQLRLKQILLNLLGN 387

Query: 715 AIHFTPSGGQ-IIISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           AI FT  GG  I ++ +   +E V LR  V DTG+G+    +E+  KPF Q  +S   + 
Sbjct: 388 AIKFTCRGGIGISVAVSERRDERVRLRIDVTDTGIGIPTDAMERIFKPFTQADSSTTRQY 447

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            GTGLGL +   + +   GK  + S    G+   +  P
Sbjct: 448 GGTGLGLSICSRLAELMDGKITVESREGSGSTFSVHLP 485



 Score = 68.5 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 28/251 (11%), Positives = 57/251 (22%), Gaps = 26/251 (10%)

Query: 224 IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHT------ 277
           +   +     L   +      E         + E  P +T  E+     +D         
Sbjct: 14  LTELEEALSGLDTPDVTIRQLEEALQLMRRARAELQPTVTCTEAPFRAPKDGGMERCSTY 73

Query: 278 --------INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE----T 325
                    +           T+ N               S     D+    + E     
Sbjct: 74  DREYRTLLPDGKVRWINTQGTTIPNPQGHGQPMTGISIDVSDRQRADDSLRRSEERYRSL 133

Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
           V+  P   F+     + + NP+ + L    S   +         L  P   D    +   
Sbjct: 134 VELSPDAVFINLKNRIVFVNPAAVRLFGAASAQQLLGKSPFD--LMHPDCHDVIRARIEQ 191

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
                   IA       ++ +      +            E      I  +  D +  ++
Sbjct: 192 QRA---GQIAQLIEEKVLRLDSS---VIDVEVSAAPLNTEEGTAFQVILRDISDRKRAEQ 245

Query: 446 KMEIEVMQLCS 456
            +     Q  +
Sbjct: 246 ALATAKEQAEA 256



 Score = 46.9 bits (110), Expect = 0.015,   Method: Composition-based stats.
 Identities = 12/132 (9%), Positives = 39/132 (29%), Gaps = 8/132 (6%)

Query: 94  YLKEISEELPKTIG-NYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWP 151
            +  ++    +  G   A +++G    D+      D     I      Q     +  +  
Sbjct: 148 RIVFVNPAAVRLFGAASAQQLLGKSPFDLMHPDCHDVIRARIEQQRAGQIAQLIEEKVLR 207

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
           ++ +   + ++++A P+ +     + F+   I+                 ++       K
Sbjct: 208 LDSS--VIDVEVSAAPLNTEEG--TAFQ--VILRDISDRKRAEQALATAKEQAEAASRAK 261

Query: 212 KGHSSVEKEKYD 223
               +    +  
Sbjct: 262 SEFLANMSHEIR 273


>gi|288942572|ref|YP_003444812.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180]
 gi|288897944|gb|ADC63780.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM 180]
          Length = 1705

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 148/799 (18%), Positives = 275/799 (34%), Gaps = 87/799 (10%)

Query: 77   DPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI---GMRLCDVSDILHIDP---- 129
             P           D    L++I +   +  G    K++   G     V  +    P    
Sbjct: 409  TPGGAPRPEV--ADRE-RLRQIQQTYIEETGLSNLKLLAPDGRVAIAVHALDADRPSQLA 465

Query: 130  ---NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLA---ALPIYSRNR-------EFS 176
                      L  +  +   TTL   +        + A     PI             F 
Sbjct: 466  TREPEAFARALAGEPVFIPPTTLDRPDEPTASARSESAMFILAPIRREAHIIGVLAMRFD 525

Query: 177  GFRGFGIV--------HVNRVDNDPRALGKRLDKKFSHLHEIKKG-------HSSVEKEK 221
                FG +               D +A      +         +        +  V    
Sbjct: 526  PALTFGRIGSIMRIGETGETYLLDRQARLLTPSRFSDTQALSVRIGDAPGFLNWRVRDPG 585

Query: 222  YDIFSQQSPP------PHLRMKNKVSSLTEYYAHKDDVLKTEKYPL------------LT 263
             D+ + Q+P       P  R+   V S  +    +          +            + 
Sbjct: 586  VDLTAGQAPTSEPSTWPLTRLAEAVLSGQDGLDVQGYRNYRGVPVMGAWSWSSRLGVGVA 645

Query: 264  SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG---EN 320
            +E         F                L         +L  R    L+   +E      
Sbjct: 646  TEIDLDEALAPFRDSRALILGALLSTVFLALALAAILVWLGERTRTRLNVLVEERTHELR 705

Query: 321  LTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
               + V++ P+   +    G + + NP+F  LT Y   + I         L    L+   
Sbjct: 706  KLAQVVEQNPLCIVITDVEGRIEHVNPAFTRLTGYAREEAIGENP----RLLKSDLNPPE 761

Query: 380  AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
                +                   +        ++       N+  +      +  +  +
Sbjct: 762  LYVELWDTILSGRTWNGEICN---RKKDGEFYWVSVSIAPVTNRRGQVTHFVAMSQDLTE 818

Query: 440  TRINKRKMEIEVMQLCSILEATSDGIA--IINREGIILSTNRAVSKLFGYPVEDILR--- 494
             R    ++        +++      +   +I+ +  +L  +  + +L GYP    +    
Sbjct: 819  RRRIDEELAARERLFRNLVSTIPGTVFRCLIDSDWTMLFISDEIERLSGYPASAFIHKGV 878

Query: 495  KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC- 553
            + +T  +  +  + +   +   +S  L  T+E   +   +E ++  +    +    S+  
Sbjct: 879  RTYTSLIHPDDVAHVEQLIDAAVSRHLPYTVEYRII--DREGRIHHVYEQGQASYDSAGA 936

Query: 554  ---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
                + T+ DIS+ K  + +L  AK++AE+ +  KS FLA +SHEIRTP+ AIIG S + 
Sbjct: 937  PIDLAGTVIDISDRKAAEVELLAAKELAEEATQAKSSFLANMSHEIRTPMNAIIGLSHLA 996

Query: 611  KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
                     + R   Y   + RS   +L I+ND+LD SKIE+GK+++      L++ +  
Sbjct: 997  LQTEL----DARQRNYIEKVHRSAESLLGIINDILDFSKIEAGKLDIEHIAFRLEDVMDN 1052

Query: 671  AISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
              +LV L A EK + +       +P  ++ D   + QI +N+ +NA+ FT  GG+I+IS 
Sbjct: 1053 LANLVGLKAEEKGVELMFDLPPEVPTALVGDPLRLGQILINLGNNAVKFTEPGGEILISV 1112

Query: 730  THTSNE--EVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
                     V     V DTG+GM+  +  +  +PF Q   S   +  GTGLGL ++  + 
Sbjct: 1113 RVMDQGADWVRLGFSVCDTGIGMSAEQQARLFEPFSQADMSTTRKYGGTGLGLTISTRLT 1172

Query: 786  DANMGKFYIFSTPAKGTLI 804
            +   G+  + S P  G+  
Sbjct: 1173 ELMGGEIRVESAPGAGSTF 1191


>gi|83312537|ref|YP_422801.1| sensor protein gacS [Magnetospirillum magneticum AMB-1]
 gi|82947378|dbj|BAE52242.1| Sensor protein gacS [Magnetospirillum magneticum AMB-1]
          Length = 1117

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 125/696 (17%), Positives = 233/696 (33%), Gaps = 39/696 (5%)

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
             P  G         A            G    G +         R              
Sbjct: 35  RLPRHGRRSPRLRRAAGPDQRFLRGTRQGTPPVGPLDAADGRGTARRQPGIPAPGQGPPP 94

Query: 209 EIKKGHSSVEKEKYDIFSQQ----SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
              +      + +   +  +     P  HLR++ +     EY           +     +
Sbjct: 95  GHSEHRGRRHRHRRPEWRHRQRQPRPALHLRLRARRGDRQEYRPPHPLAGLKGEAVSGMN 154

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL--SHRNHPSLSAYFDEGENLT 322
              +L  +          +  +   G L       F  +         +     E E   
Sbjct: 155 RIFALGRESMARRRGGASFPIELAAGDLTPTGSPQFVVIMRDISERKRIEREMAESEERF 214

Query: 323 PETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
            +        F+           +  F   T+            +    D     D  A 
Sbjct: 215 RDFAQSTSDWFWEMGPDLRFTGFSGQFTEHTRTLPD------HYVGRTRDEMISDDTPAE 268

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
                             ++  +        +        +   E     G   +  +  
Sbjct: 269 VRRQNLADMAARRPFRDFVYHTREMDGPGRFLRVNGKPVFDASGEFTGYRGTASDITEEI 328

Query: 442 INKRKM---EIEVMQLC----SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
             + ++   + E+ +L     SILE+  DGI  I+  G     NRA +KL  +   +++ 
Sbjct: 329 EAEERLKASQAEIERLAERNNSILESVDDGIVGIDLNGRATFVNRAAAKLLDFEPAELVG 388

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-- 552
                 +  +  +     L +IL        +       ++   L +  I   +      
Sbjct: 389 SDILPLMALDLHTA--EKLYQILLRLTESIRDDTASFKRRDGSPLPVEYIASPVMDRGNQ 446

Query: 553 -CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
               L   DI++ +  + +L  AK+ AE  +  KS+FLA +SHEIRTP+  +IG + ++ 
Sbjct: 447 VGVVLGFRDITQRRLVERQLREAKEAAEAGNRTKSEFLATMSHEIRTPMNGVIGMTGLLL 506

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
           + R     +     +A  I  SG  +L ++ND+LD SK+E+GK++L +    L   V   
Sbjct: 507 DTRL----SEEQRHFAETIRDSGESLLTVINDILDFSKMEAGKLDLDYTEFELVPLVESV 562

Query: 672 ISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
           + ++   A+ K I I +     +   + +D   ++Q+ +N+  NA+ FT  GG + I  +
Sbjct: 563 VDILAPRAHAKGIEIASLIDPRLRMLVRSDPGRLRQVLMNLGGNAVKFTEKGG-VSIEVS 621

Query: 731 HTSN----EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
                         VRDTG+G+      +    F Q+  S   R  GTGLGL +++ + +
Sbjct: 622 LLDGPDAPAMARFDVRDTGIGIPPEAQGRLFSMFSQVDASTARRYGGTGLGLAISRRLAE 681

Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLY----DTSHPHD 818
              G+  + S   +G+   I  PL      ++ P D
Sbjct: 682 LMGGEVGVESAVGRGSRFWITLPLELLAPQSAAPPD 717



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 43/415 (10%), Positives = 101/415 (24%), Gaps = 38/415 (9%)

Query: 64  NTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD 123
                +SE  F  D    T  + W +         S +  +         +G    ++  
Sbjct: 204 EREMAESEERFR-DFAQSTSDWFWEMGPDLRFTGFSGQFTEHTRTLPDHYVGRTRDEMIS 262

Query: 124 ILHIDPNNHIGDL-LKRQNTWYGKTTL-WPIEGTNLYVPIDLAALPIYSRNREFSGFRGF 181
                         +  +  +         ++G   ++ +     P++  + EF+G+RG 
Sbjct: 263 DDTPAEVRRQNLADMAARRPFRDFVYHTREMDGPGRFLRV--NGKPVFDASGEFTGYRG- 319

Query: 182 GIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ-SPPPHLRMKNKV 240
                   + +     K    +   L E          +               R   K+
Sbjct: 320 -TASDITEEIEAEERLKASQAEIERLAERNNSILESVDDGIVGIDLNGRATFVNRAAAKL 378

Query: 241 SSLTEYYAHKDDVLKTEKYPLLTSE----------ESSLPEQEDFHTINLNQYTKKQYFG 290
                      D+L      L T+E          ES   +   F   + +    +    
Sbjct: 379 LDFEPAELVGSDILPLMALDLHTAEKLYQILLRLTESIRDDTASFKRRDGSPLPVEYIAS 438

Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLL 350
            + +   +    L      +     +       E  +                    FL 
Sbjct: 439 PVMDRGNQVGVVLG-FRDITQRRLVERQLREAKEAAEAGN------------RTKSEFLA 485

Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN---- 406
              ++    +    G++ LL   +LS+        +  S  + +     +          
Sbjct: 486 TMSHEIRTPMNGVIGMTGLLLDTRLSEEQRHFAETIRDSGESLLTVINDILDFSKMEAGK 545

Query: 407 ---RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458
                    +  +     +         GIE   +     +  +  +  +L  +L
Sbjct: 546 LDLDYTEFELVPLVESVVDILAPRAHAKGIEIASLIDPRLRMLVRSDPGRLRQVL 600



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/357 (9%), Positives = 86/357 (24%), Gaps = 33/357 (9%)

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
            ++ P+ +  H I     + +         +         R  P L       +     T
Sbjct: 2   RAAQPDHDHHHHIRALIVSSRPSSPPAAAPAGPRL-PRHGRRSPRLRRAAGPDQRFLRGT 60

Query: 326 VDKCP-IPFFVYSHGNLFYANP------SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
               P +     + G                    +                   +    
Sbjct: 61  RQGTPPVGPLDAADGRGTARRQPGIPAPGQGPPPGHSEHRGRRHRHRRPEWRHRQRQPRP 120

Query: 379 NAIKPVMLYRSDRTCIA--------------------ASARLHTIQWNRENSLAMTFIPF 418
                +   R DR                        A  R    +     S  +     
Sbjct: 121 ALHLRLRARRGDRQEYRPPHPLAGLKGEAVSGMNRIFALGRESMARRRGGASFPIEL--A 178

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
                   +     I  +  + +  +R+M     +     ++TSD    +  +      +
Sbjct: 179 AGDLTPTGSPQFVVIMRDISERKRIEREMAESEERFRDFAQSTSDWFWEMGPDLRFTGFS 238

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY-LTEILSLDLRQTLEKITLGSTKEEK 537
              ++      +  + +     +  +TP+ +    L ++ +    +     T       +
Sbjct: 239 GQFTEHTRTLPDHYVGRTRDEMISDDTPAEVRRQNLADMAARRPFRDFVYHTREMDGPGR 298

Query: 538 LLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
            L +              Y  T  DI+E  + + +L  ++   E+ +   +  L  V
Sbjct: 299 FLRVNGKPVFDASGEFTGYRGTASDITEEIEAEERLKASQAEIERLAERNNSILESV 355



 Score = 55.0 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/247 (10%), Positives = 64/247 (25%), Gaps = 11/247 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID +G    ++    K +     +++G  +  +  +           LL+   +    T 
Sbjct: 362 IDLNGRATFVNRAAAKLLDFEPAELVGSDILPLMALDLHTAEKLYQILLRLTESIRDDTA 421

Query: 149 -LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                +G+   +P++  A P+  R  +     GF                +   +     
Sbjct: 422 SFKRRDGSP--LPVEYIASPVMDRGNQVGVVLGF---RDITQRRLVERQLREAKEAAEAG 476

Query: 208 HEIKKGHSSVEKEKYD-----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
           +  K    +    +       +          R+  +     E      + L T    +L
Sbjct: 477 NRTKSEFLATMSHEIRTPMNGVIGMTGLLLDTRLSEEQRHFAETIRDSGESLLTVINDIL 536

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
              +    + +  +T        +     L   +      ++    P L           
Sbjct: 537 DFSKMEAGKLDLDYTEFELVPLVESVVDILAPRAHAKGIEIASLIDPRLRMLVRSDPGRL 596

Query: 323 PETVDKC 329
            + +   
Sbjct: 597 RQVLMNL 603


>gi|322421487|ref|YP_004200710.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
            M18]
 gi|320127874|gb|ADW15434.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
            M18]
          Length = 1661

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 142/741 (19%), Positives = 259/741 (34%), Gaps = 33/741 (4%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR-QNTWYGKT 147
            +D  G + ++++ + +  G    ++IG    D       DP   +  + +        + 
Sbjct: 939  VDPDGIISDVNDRMCQMSGYARGELIGTPFTD----YFTDPALAMAGVEETFAKEVVTEY 994

Query: 148  TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
             L  +  T   + +   A           G   F                +        L
Sbjct: 995  ALTLVSRTRRLLQVSFNASVFRDPTGSVRGI--FASARDVTDHVRLNEQLREQQTYLRGL 1052

Query: 208  HEIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
             E           +  I             ++ ++          D         L  +E
Sbjct: 1053 IESSVDGLITVDPEGFITDVNEQMCRMTGYLREELIGSQFRDYFTDPARAVTGVKLTLAE 1112

Query: 266  ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH----PSLSAYFDEGENL 321
                       T    + T        +          +          L A   + +  
Sbjct: 1113 GVVTNYDLVLKTKTGRKATVSFNASVFRAADGRVQGIFASARDVSEQARLQAQLSDQQAY 1172

Query: 322  TPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
                ++      F +   G +   N     LT Y     I    G S+    P+L+    
Sbjct: 1173 NRSLIEASADALFAIAPDGTITDVNEEATRLTCYSRKHLI--NSGFSSYFTDPELASAGV 1230

Query: 381  IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
             + +         +     L T        + ++F     ++   + +       +  + 
Sbjct: 1231 RQTLSR----GRVLTYELVLIT---RHNRRIPVSFNAGVFSDAAGKQIGILAGARDITEQ 1283

Query: 441  RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
            +  ++++  +     S++E+  D +   +  GII   N+ +  L G+  ED++  PF  +
Sbjct: 1284 KKLEQQLRDQQFYARSLIESNIDALMTTDPVGIITDVNQQMEALTGHSREDLIGTPFKRY 1343

Query: 501  LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTM 558
                        +  +L        E   L     E ++S                    
Sbjct: 1344 FI--DQERAEEGIRRVLREGKVTNYELTALSKQGRETVVSYNAATFADREGKLQGVFAAA 1401

Query: 559  HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
             D++E K  +  L       E  +  K  FLA +SHE+RTPL AIIGF+  +  +  GPL
Sbjct: 1402 RDVTERKSFEKTLEEKGHEMENANLAKDRFLASMSHELRTPLNAIIGFTGTLLMRLPGPL 1461

Query: 619  GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
               +  +  + I  S   +L ++NDLLD++KIESGK+ ++ EPVS    V E    +   
Sbjct: 1462 TGDQEKQ-LSNISTSAKHLLLLINDLLDLAKIESGKVEINPEPVSCRALVQEIAGTLTPM 1520

Query: 679  ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH---TSNE 735
            A  K + +  +   +   I  D R++ QI +N+  NAI FT  G ++ I+ +       +
Sbjct: 1521 AENKGLKLSLAAEGD-RTINTDRRALSQILINLAYNAIKFTQQG-EVRIAVSFDAGEGGD 1578

Query: 736  EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            EV + V DTG+G+   E  K  + F Q+ +S   R EGTGLGL L++ +V+   G   + 
Sbjct: 1579 EVEISVTDTGLGIKQEEQAKLFRAFTQVDSSSSRRFEGTGLGLYLSQKLVELLDGHIVME 1638

Query: 796  STPAKGTLIEIIFPLYDTSHP 816
            S   KG+   ++ P      P
Sbjct: 1639 SEYGKGSRFAVVLPARGVGIP 1659



 Score =  155 bits (392), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 60/498 (12%), Positives = 127/498 (25%), Gaps = 27/498 (5%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ---NTWYGK 146
           D  G +   +E   +  G    +++G     +             ++L        W G 
Sbjct: 192 DLDGKILLWNEGARRLYGYEPEEVVGKANSSILHTDEDVTAGRPREILASALHNGKWEGT 251

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                  G      + +   P         G+    I      +       K        
Sbjct: 252 INRRRKNGDLFTARVVI--TPRRDSLGRAIGY--LLISKDITDEIRLTEKLKSTQFYTRS 307

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
           L E              I         L    ++++          D     E   L+  
Sbjct: 308 LIESNIDALMTTDPLGIISDVNKQMVTLTGYTRDELIGSPFKNYFTDSERAEEGIKLVLR 367

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
           E      +    +             T ++         +     +     ++    +  
Sbjct: 368 EGKVTNYELTALSKAGQPTVVSYNASTFRDAEGRLQGVFAAARDITEQKELEKRLRDSEA 427

Query: 325 ----TVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
                ++        V   G +   N     ++ Y   D I              +  + 
Sbjct: 428 YNRGLIEASVDGLITVDRSGAISDVNARMCQMSGYTREDLIGTP------FIDYFMDSDR 481

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
           A   V     +      +  + T        L ++F      +             +  +
Sbjct: 482 ADLGVKRTFEEGVVTDYALTMAT---RDGEKLVVSFNASVFLDSSGAVRGIFASARDITE 538

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
               + ++  E      ++EA+ DG+  ++   II   N  + ++ GY  E+++  PF  
Sbjct: 539 QAGLQNQLSEERAYNRGLIEASLDGLITVDPMLIITDVNETMCRMSGYSREELIGTPFPD 598

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLT 557
           +     P      +   L        E    G    E+L+S    I K           +
Sbjct: 599 YF--TDPRRAAEGVRLTLDRGAATNYELTLSGKEGNEQLVSFNAAIFKDETGAVRGIFAS 656

Query: 558 MHDISEWKQEKNKLSHAK 575
             DI+E  + + +LS  +
Sbjct: 657 ARDITEQARLQTQLSEER 674



 Score =  150 bits (379), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 55/500 (11%), Positives = 134/500 (26%), Gaps = 25/500 (5%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            +D    + +++E + +  G    ++IG    D            +   L R      + T
Sbjct: 567  VDPMLIITDVNETMCRMSGYSREELIGTPFPDYFTDPRRAAEG-VRLTLDRGAATNYELT 625

Query: 149  LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
            L   EG      +   A           G   F            +            L 
Sbjct: 626  LSGKEGNEQ--LVSFNAAIFKDETGAVRGI--FASARDITEQARLQTQLSEERAYNRGLI 681

Query: 209  EIKKGHSSVEKEKYDIFSQQSPP--PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
            E          E   I            R +N++   +      +     E   L   E 
Sbjct: 682  EASVDGLVTVDEAMIITDVNETMCRMAGRRRNQLIGSSFPTYFSERQRAEEGVRLTFKEG 741

Query: 267  SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT---- 322
            +           +             ++   +     +     +     +   N +    
Sbjct: 742  AVTNYVLTLELSDGRLAPVSFNAAVFKDRLGKVRGIFASARDITEQKKLESQLNASQLYT 801

Query: 323  PETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
               ++            G +   N     LT Y   + I +                 A 
Sbjct: 802  RSLIESNIDALMTTDPVGVVTDVNEQMEWLTGYTRDELIGVP------FKNFFTDPGRAE 855

Query: 382  KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
              + L   +           + Q        +++     A++  +         +  + +
Sbjct: 856  DGIRLVLREGKVTNYELTALSKQ---GKETVVSYNATTFADREGKLQGVFAAARDITEQK 912

Query: 442  INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
              + ++         ++EA+ DG+  ++ +GII   N  + ++ GY   +++  PFT + 
Sbjct: 913  KLELQLRDSQAYNRGLIEASIDGLITVDPDGIISDVNDRMCQMSGYARGELIGTPFTDYF 972

Query: 502  EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMH 559
                P++    + E  + ++        +  T+    +S    + + P         +  
Sbjct: 973  --TDPALAMAGVEETFAKEVVTEYALTLVSRTRRLLQVSFNASVFRDPTGSVRGIFASAR 1030

Query: 560  DISEWKQEKNKLSHAKKIAE 579
            D+++  +   +L   +    
Sbjct: 1031 DVTDHVRLNEQLREQQTYLR 1050



 Score =  148 bits (373), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 64/535 (11%), Positives = 144/535 (26%), Gaps = 48/535 (8%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK---RQNTWYGK 146
           D  G +   +E   +  G    +++G     +        +     +L+   R+  W G 
Sbjct: 49  DLDGTILLWNEGARRIYGYQPEEVVGKANSSILHTEEDLKSGKPAQMLEAALREGKWEGT 108

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF----------------------GIV 184
                  G      + +   P    N +  GF                          IV
Sbjct: 109 INRRRKSGEVFTARVVV--TPRRDDNGKAIGFLLISKDVTDEVRFSDQIRKAKLFDSAIV 166

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244
              +   D          ++S + +   G   +  E         P   +   N     T
Sbjct: 167 SNAQEAVDFITNILESSTEYSVIGKDLDGKILLWNEGARRLYGYEPEEVVGKANSSILHT 226

Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
           +         +     L   +        +    N + +T +      +++   +  YL 
Sbjct: 227 DEDVTAGRPREILASALHNGK---WEGTINRRRKNGDLFTARVVITPRRDSLGRAIGYLL 283

Query: 305 HRNHPSLSAYFDEGENL----TPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDD 359
                +      E        T   ++            G +   N   + LT Y   + 
Sbjct: 284 ISKDITDEIRLTEKLKSTQFYTRSLIESNIDALMTTDPLGIISDVNKQMVTLTGYTRDEL 343

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
           I                   A + + L   +         L  +    +    +++    
Sbjct: 344 IGSP------FKNYFTDSERAEEGIKLVLREGKVTNYE--LTALSKAGQP-TVVSYNAST 394

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
             +             +  + +  ++++         ++EA+ DG+  ++R G I   N 
Sbjct: 395 FRDAEGRLQGVFAAARDITEQKELEKRLRDSEAYNRGLIEASVDGLITVDRSGAISDVNA 454

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
            + ++ GY  ED++  PF  +   +  + +   +       +             E+ ++
Sbjct: 455 RMCQMSGYTREDLIGTPFIDYFMDSDRADL--GVKRTFEEGVVTDYALTMATRDGEKLVV 512

Query: 540 SLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
           S    +             +  DI+E    +N+LS  +           D L  V
Sbjct: 513 SFNASVFLDSSGAVRGIFASARDITEQAGLQNQLSEERAYNRGLIEASLDGLITV 567



 Score =  140 bits (354), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 48/498 (9%), Positives = 120/498 (24%), Gaps = 29/498 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            D  G + ++++++    G    ++IG    +            I  +L+       + T
Sbjct: 319 TDPLGIISDVNKQMVTLTGYTRDELIGSPFKN-YFTDSERAEEGIKLVLREGKVTNYELT 377

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                G      +   A           G   F          +     +  +     L 
Sbjct: 378 ALSKAG--QPTVVSYNASTFRDAEGRLQGV--FAAARDITEQKELEKRLRDSEAYNRGLI 433

Query: 209 EIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
           E              I    +         +  +          D             E 
Sbjct: 434 EASVDGLITVDRSGAISDVNARMCQMSGYTREDLIGTPFIDYFMDSDRADLGVKRTFEEG 493

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA----YFDEGENLT 322
                     T +  +           ++S       +     +  A       E     
Sbjct: 494 VVTDYALTMATRDGEKLVVSFNASVFLDSSGAVRGIFASARDITEQAGLQNQLSEERAYN 553

Query: 323 PETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
              ++        V     +   N +   ++ Y   + I                   A 
Sbjct: 554 RGLIEASLDGLITVDPMLIITDVNETMCRMSGYSREELIGTP------FPDYFTDPRRAA 607

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
           + V L             L   +    N   ++F      ++            +  +  
Sbjct: 608 EGVRLTLDRGAATNYELTLSGKE---GNEQLVSFNAAIFKDETGAVRGIFASARDITEQA 664

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
             + ++  E      ++EA+ DG+  ++   II   N  + ++ G     ++   F  + 
Sbjct: 665 RLQTQLSEERAYNRGLIEASVDGLVTVDEAMIITDVNETMCRMAGRRRNQLIGSSFPTYF 724

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK----KLPFSSCYSLT 557
            +         +              +      + +L  +         +L        +
Sbjct: 725 SE--RQRAEEGVRLTFKEGA--VTNYVLTLELSDGRLAPVSFNAAVFKDRLGKVRGIFAS 780

Query: 558 MHDISEWKQEKNKLSHAK 575
             DI+E K+ +++L+ ++
Sbjct: 781 ARDITEQKKLESQLNASQ 798



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/150 (14%), Positives = 56/150 (37%), Gaps = 8/150 (5%)

Query: 451 VMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
              L +I +++++  I   + +G IL  N    +++GY  E+++ K  +  L        
Sbjct: 30  KEFLANIFQSSTEYSIIGKDLDGTILLWNEGARRIYGYQPEEVVGKANSSILHTEEDLKS 89

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWK 565
                 + +       E       K  ++ + R+++      +     + L   D+++  
Sbjct: 90  GKPAQMLEAALREGKWEGTINRRRKSGEVFTARVVVTPRRDDNGKAIGFLLISKDVTDEV 149

Query: 566 QEKNKLSHAK---KIAEKESSHKSDFLARV 592
           +  +++  AK         +    DF+  +
Sbjct: 150 RFSDQIRKAKLFDSAIVSNAQEAVDFITNI 179



 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/249 (8%), Positives = 49/249 (19%), Gaps = 7/249 (2%)

Query: 86   TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
             + I   G + +++EE  +        +I            +     +   L R      
Sbjct: 1184 LFAIAPDGTITDVNEEATRLTCYSRKHLINSGFSSYFTDPELASAG-VRQTLSRGRVLTY 1242

Query: 146  KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
            +  L      N  +P+   A        +  G                    +       
Sbjct: 1243 ELVLITR--HNRRIPVSFNAGVFSDAAGKQIGI--LAGARDITEQKKLEQQLRDQQFYAR 1298

Query: 206  HLHEIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
             L E              I              +  +          D     E    + 
Sbjct: 1299 SLIESNIDALMTTDPVGIITDVNQQMEALTGHSREDLIGTPFKRYFIDQERAEEGIRRVL 1358

Query: 264  SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
             E      +    +    +        T  +   +     +     +    F++      
Sbjct: 1359 REGKVTNYELTALSKQGRETVVSYNAATFADREGKLQGVFAAARDVTERKSFEKTLEEKG 1418

Query: 324  ETVDKCPIP 332
              ++   + 
Sbjct: 1419 HEMENANLA 1427


>gi|298248783|ref|ZP_06972588.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297551442|gb|EFH85308.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 981

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 104/738 (14%), Positives = 230/738 (31%), Gaps = 41/738 (5%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL-LKRQNTW 143
           F W     GY+  +++ L  ++     +  G                      ++    +
Sbjct: 267 FVWIARPDGYVTYLNQRLLDSLALTHEQAEGDGWLAGVHPDDRQRVWEAWQTSIQAGEPY 326

Query: 144 YGKTTLWPIEGT-NLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
             +      +GT   Y       +P  +        R  G               K  ++
Sbjct: 327 --EVGHRMQDGTSGAYRWFLARGMPQRNAQGTI--LRWVGTCTDIEEQKRVEQQLKASEE 382

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDD--VLKTE 257
            +  L E         +                    +  +      + H DD    +  
Sbjct: 383 NWRVLAETVPQFVWTIQPDGSAMYFNQRYYDYTGASPEQALGHGWSQFLHPDDSEQARAL 442

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD- 316
           +  LL + E+   E         N          +++ + +  ++             + 
Sbjct: 443 RRHLLATGEAYEIEYRLREGKTGNYRWFLARAMPVRDETGQIVKWFGTSTDIEEQKRAEQ 502

Query: 317 ---EGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
              E E       +  P   +     G   Y N  +   T    ++  +  G        
Sbjct: 503 WIKESEENLRVLAETVPQLVWTARPDGRHEYTNQHWCDYTGLT-LEHFQSDGWAHLQFIH 561

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
           P   ++N +                 RL   Q                 ++  + +   G
Sbjct: 562 PDDRESNRV-LGQHALDTGELFEHEERLREGQT--GAYRWFLTRALPVRDEAGQIVKWFG 618

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
              +  + +  +  +     +  +++ +   G  +      I+  N    ++ GY  ED+
Sbjct: 619 TSTDIDEQKRIEEALRESQERASTLMNSNIIGTFV-GEGEQIVDANDTFLRMTGYTREDL 677

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
                          +                         K+   L + +    L    
Sbjct: 678 RAGRINWMHMTPPEYLTRTLEAHKELAAQPSLAPYEKEYVCKDGSRLPVLVGGVVLEHHP 737

Query: 553 CYSLTMH-DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
             ++    D S  K+ + +              K DF+   SHE+RTPLT +   +  + 
Sbjct: 738 RQAIIFVLDNSARKELEQR--------------KDDFINMASHELRTPLTVVKLQT-HLV 782

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
           ++R             + ++R    +  ++ +LLD+S++++G++   +E V LDE + E 
Sbjct: 783 HKRLEKHSQHEAATALSRVERPIEQLERLIAELLDVSQMQTGRLKYIWERVDLDELLREI 842

Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
              +Q  +    I++R +   +   +  D   ++Q+  N+LSNAI ++P+   + +  + 
Sbjct: 843 ADTMQRMSPSHTIVVRGTVQTS---VTGDRDRLRQVFTNLLSNAIKYSPNAKTVEVELSA 899

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
           +    V +RV+D G+G+   + +K  + F +          G G+GL +   +V  + G 
Sbjct: 900 SEEA-VTIRVQDHGLGIPREKHKKIFERFYRATGLSHETIPGLGMGLYIVAEIVKGHGGT 958

Query: 792 FYIFSTPAKGTLIEIIFP 809
             + S   KG+   +  P
Sbjct: 959 ITVESDVGKGSTFTVTLP 976



 Score =  124 bits (311), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 55/509 (10%), Positives = 134/509 (26%), Gaps = 26/509 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D    +   +      +G    ++ G  L   +   H+   +    + K + T      
Sbjct: 32  VDDATTIVYTNASAQAMLGATREELCGTSLWRGAP--HLVSPSLYQAVRKTRQTREPTNV 89

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
            +    T+ ++ + L+            G       H  R     +    + +   + + 
Sbjct: 90  AYVSPTTHSWLHVQLSP--------TVGGLM--LHFHEGRAPTRRQESFSQSEHLCADIL 139

Query: 209 EIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
           E      ++      I +    P     +R +  V                 +      E
Sbjct: 140 ENISDWLAILAPDGMILAINQRPLEDAQVRREEIVGRSLAETPWWSYAPAVLQRLRAAIE 199

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD-EGENLTPE 324
           ++   E   F +    Q               ++ + + +  +  L      + E+    
Sbjct: 200 QACKGETVRFDSRICPQPGWYLDLAVTIAPHFDANKQVEYLLYVGLDITKRKQVEDELRT 259

Query: 325 TVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
            VD  P   ++    G + Y N   L           E  G L+ +            + 
Sbjct: 260 LVDALPQFVWIARPDGYVTYLNQRLLDSLALTHEQA-EGDGWLAGVHPDD---RQRVWEA 315

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
                          R+                   + N     +   G   +  + +  
Sbjct: 316 WQTSIQAGEPYEVGHRMQDGTS--GAYRWFLARGMPQRNAQGTILRWVGTCTDIEEQKRV 373

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
           +++++        + E     +  I  +G  +  N+      G   E  L   ++ FL  
Sbjct: 374 EQQLKASEENWRVLAETVPQFVWTIQPDGSAMYFNQRYYDYTGASPEQALGHGWSQFLHP 433

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITL-GSTKEEKLLSLRIIIKKLPFSSC--YSLTMHD 560
           +           +L+      +E     G T   +    R +  +        +  T  D
Sbjct: 434 DDSEQARALRRHLLATGEAYEIEYRLREGKTGNYRWFLARAMPVRDETGQIVKWFGTSTD 493

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
           I E K+ +  +  +++     +      +
Sbjct: 494 IEEQKRAEQWIKESEENLRVLAETVPQLV 522



 Score = 84.3 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 33/406 (8%), Positives = 100/406 (24%), Gaps = 19/406 (4%)

Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA 248
                R      D   + L  +      V+     +++  S    L    +    T  + 
Sbjct: 4   AKQTRRVTPASSDTLLTILETLPDAFFVVDDATTIVYTNASAQAMLGATREELCGTSLWR 63

Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
               ++    Y  +     +       +                         +   R  
Sbjct: 64  GAPHLVSPSLYQAVRKTRQTREPTNVAYVSPTTHSWLHVQLSPTVG--GLMLHFHEGRAP 121

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
                 F + E+L  + ++       + +  G +   N   L   + +  ++I       
Sbjct: 122 TRRQESFSQSEHLCADILENISDWLAILAPDGMILAINQRPLEDAQVRR-EEIVGRSLAE 180

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
           T   +   +    ++  +        +   +R+          L +        +   + 
Sbjct: 181 TPWWSYAPAVLQRLRAAIEQACKGETVRFDSRICPQP---GWYLDLAVTIAPHFDANKQV 237

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
                +  +    +  +        +L ++++A    + I   +G +   N+ +      
Sbjct: 238 EYLLYVGLDITKRKQVE-------DELRTLVDALPQFVWIARPDGYVTYLNQRLLDSLAL 290

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
             E      +   +  +    +       +       +       T              
Sbjct: 291 THEQAEGDGWLAGVHPDDRQRVWEAWQTSIQAGEPYEVGHRMQDGT-SGAYRWFLARGMP 349

Query: 548 LPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
              +      +  T  DI E K+ + +L  +++     +     F+
Sbjct: 350 QRNAQGTILRWVGTCTDIEEQKRVEQQLKASEENWRVLAETVPQFV 395



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/275 (14%), Positives = 84/275 (30%), Gaps = 24/275 (8%)

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIA 363
             N            +     ++  P  FF V     + Y N S   +      +    +
Sbjct: 1   MSNAKQTRRVTPASSDTLLTILETLPDAFFVVDDATTIVYTNASAQAMLGATREELCGTS 60

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
                    P L   +  + V   R  R     +    T      + L +   P      
Sbjct: 61  LWRGA----PHLVSPSLYQAVRKTRQTREPTNVAYVSPTTH----SWLHVQLSPT----- 107

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQL-CSILEATSDGIAIINREGIILSTNRAVS 482
               +    +   +      +++   +   L   ILE  SD +AI+  +G+IL+ N+   
Sbjct: 108 ----VGGLMLHFHEGRAPTRRQESFSQSEHLCADILENISDWLAILAPDGMILAINQRPL 163

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD-LRQTLEKITLGSTKEEKLLSL 541
           +      E+I+ +        +    +   L   +      +T+   +    +    L L
Sbjct: 164 EDAQVRREEIVGRSLAETPWWSYAPAVLQRLRAAIEQACKGETVRFDSRICPQPGWYLDL 223

Query: 542 RIIIKKLPFSS----CYSLTMHDISEWKQEKNKLS 572
            + I     ++           DI++ KQ +++L 
Sbjct: 224 AVTIAPHFDANKQVEYLLYVGLDITKRKQVEDELR 258



 Score = 60.0 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/153 (12%), Positives = 50/153 (32%), Gaps = 7/153 (4%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +  +R        L +ILE   D   +++    I+ TN +   + G   E++        
Sbjct: 5   KQTRRVTPASSDTLLTILETLPDAFFVVDDATTIVYTNASAQAMLGATREELCGTSLWRG 64

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
                   +   + +         +  ++  +      L +++            L  H+
Sbjct: 65  APHLVSPSLYQAVRKTRQTREPTNVAYVSPTTH---SWLHVQLSPT----VGGLMLHFHE 117

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
                + +   S ++ +      + SD+LA ++
Sbjct: 118 GRAPTRRQESFSQSEHLCADILENISDWLAILA 150


>gi|332702934|ref|ZP_08423022.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332553083|gb|EGJ50127.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 938

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 132/804 (16%), Positives = 265/804 (32%), Gaps = 64/804 (7%)

Query: 55  TDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI 114
             +N+   +  + L      + +     +RF     A G +   +  +    G      +
Sbjct: 5   ARENERLRAEIDRLAIYRDMIENAPDLVMRF----SAEGRVLFANPAIEGLTGLRPKMTL 60

Query: 115 GMRLCDVSDILHIDP--NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172
           G+   ++          +  + +++        + TL+ ++G    V +           
Sbjct: 61  GLTPQEIGFPQEDSERIHQAVLEVIATGQGLLDEVTLYTLQGE---VILQFRYALQRDAQ 117

Query: 173 REFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH-EIKKGHSSVEKEKYDIFSQQSPP 231
              +   GF        +       +   ++   L  E+    +S+              
Sbjct: 118 GHGAAVLGFA--RNITREKRLERSHRLAKEQAEALASEVSTILASMVDGVGVYGPGGELR 175

Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKK----- 286
              R    +   +          +     L T +   LP+ +      L   T       
Sbjct: 176 YMNRAGEAILDRSLEERCMSMRDRWALLRLETPDGHVLPDDQRPVFRALQGETVHYEQLV 235

Query: 287 -----------QYFGTLQNNSKESFEYLSH-----------RNHPSLSAYFDEGENLTPE 324
                           ++N        ++            +    L A       L   
Sbjct: 236 IRRGCGGKLICLSAAPIRNAEGTLLGAVATFKDMTHKHALEQQREELLAALKAERALLQA 295

Query: 325 TVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
                P    V    G L  ANP+   +          +       +  P        + 
Sbjct: 296 VFKSAPGGILVTDPFGRLTMANPAADNIRGEPYPIGRTVWEIEDFTILRPDGRPWPKDEL 355

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
            +   +    I+   R+  IQ N      +        ++        G+  +  +    
Sbjct: 356 PLERSALHGEISERVRMSFIQPNGARREIL-CNTAPIRDEQDRPTGAVGVFQDITELCET 414

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
              + +   ++ +++E   D I  ++R+      N A  K  G    + +    T     
Sbjct: 415 MEALRVSRNEIRTLVENVPDLIVRVDRQYCRTYINHAWEKYTGRSAAEYINTHITEPFLP 474

Query: 504 NTPS---VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS----L 556
                       L E  +   R++ +           +  L   I     S        +
Sbjct: 475 ERADYLVPYRKALDEAFATGERRSFDCSYRTRLG---VAHLSTFIIPEFSSDGEVESALV 531

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
              D++  K  +++L  AK+IAE+ S  KS+FLA +SHEIRTPL  ++G +E+       
Sbjct: 532 LARDVTALKALEHELRQAKEIAEEASRAKSEFLAHMSHEIRTPLNGMLGMTEL----AES 587

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
                R   + +    SGN +L ++ND+LD+S+IE+G++ +      L   V      + 
Sbjct: 588 ATLEERTRHFLHLARESGNHLLGLINDILDLSRIEAGELRIERYGFDLRVEVRLLAESMS 647

Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIII----STTH 731
           + A +K +L+       IP  +L D   ++QI +N++ NA+ FT  GG +++     T  
Sbjct: 648 VLAEQKGLLLECRLDELIPNDLLGDAGRLRQILVNLVGNALKFTRQGGVLLLVEMEETRA 707

Query: 732 TSNEEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
               ++     V DTG+G+         + F ++ NS +    GTGLGL + + +V+   
Sbjct: 708 VGQGDIRLLFSVSDTGIGIDKATFRTIFENFTRLDNSAEQV--GTGLGLSICRRLVEMMG 765

Query: 790 GKFYIFSTPAKGTLIEIIFPLYDT 813
           G+ ++ S    G+   +  P    
Sbjct: 766 GRIWLESEVGVGSTFHVSLPFGQQ 789



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 65/161 (40%), Gaps = 7/161 (4%)

Query: 438 VDTRINKRKMEIEVMQL---CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
            D      ++  E+ +L     ++E   D +   + EG +L  N A+  L G   +  L 
Sbjct: 2   ADLARENERLRAEIDRLAIYRDMIENAPDLVMRFSAEGRVLFANPAIEGLTGLRPKMTLG 61

Query: 495 KPFTVF-LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553
                    Q     ++  + E+++   +  L+++TL + + E +L  R  +++      
Sbjct: 62  LTPQEIGFPQEDSERIHQAVLEVIATG-QGLLDEVTLYTLQGEVILQFRYALQRDAQGHG 120

Query: 554 --YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
                   +I+  K+ +     AK+ AE  +S  S  LA +
Sbjct: 121 AAVLGFARNITREKRLERSHRLAKEQAEALASEVSTILASM 161


>gi|189347008|ref|YP_001943537.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium limicola DSM
           245]
 gi|189341155|gb|ACD90558.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium limicola DSM
           245]
          Length = 926

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 147/819 (17%), Positives = 283/819 (34%), Gaps = 73/819 (8%)

Query: 18  CKGNTQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFD 77
           C  +T D+  ++    +  + +    P   + EQ+   +++    S    + S    V +
Sbjct: 8   CSKDTGDVPSRE----YLVQLASSAEPGAQAEEQTGLQNRDAYLQSILRAIPSGIGLVVN 63

Query: 78  PIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV--SDILHIDPNNHIGD 135
                            +KE++    + +G    +++      +  SD  +         
Sbjct: 64  R---------------VIKEVNLRFCEILGYTRDELVNQSSRMLYLSDEEYAYVGAEKYR 108

Query: 136 LLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPI-YSRNREFSGFRGFGIVHVNRVDNDPR 194
            + +  +   +  +   +G  L +   L++  I      +   F     V          
Sbjct: 109 QIAQFGSGTVEVRMRRKDG--LIINTLLSSTTIDSDDLSQGVTF----TVLDITSLKQAE 162

Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT--------EY 246
           A+ +  ++K+  L E       + ++        S P  + +    + LT          
Sbjct: 163 AMLRESEEKYRSLIEQSIQGMIIAQDNPPRVCFASKPMAVIIGYSPAELTSFSSKELLAL 222

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQE-DFHTINLNQYTKKQYFGTL--QNNSKESFEYL 303
               D       +    +       +E      N      + +  T+  + +       +
Sbjct: 223 VHPDDRQSYRNAFHDCINSHLQQIRREFRMVHKNGKIRWVELFGTTILYEGDPAIQTVMV 282

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS------HGNLFYANPSFLLLTKYKSV 357
                        +      E  D      FV+        G     N S   +  Y   
Sbjct: 283 DITERKHAEEELVKSGEKLSELFDNIRDGLFVHPVLEGGVPGKFEMVNRSASDILGYSEQ 342

Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
           + +         + AP        + + L     + I             +N  ++    
Sbjct: 343 ELL---NMSPQDIYAPVFPCTGIDREITLLNEPGSQI------FEAVQRHKNGTSVPVEV 393

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
                +            +    + +  +M+    ++ + L+ +   + I N    I   
Sbjct: 394 STGRIEISGRSSIISTVRDITTRKRSYEEMK----KITTALQQSPAVVVITNAHAEIEYV 449

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
           N   S+L G+  E++  K   V             L   L                K  +
Sbjct: 450 NPRFSELTGFAAEEVSGKNPKVLQSGLMSKETYRQLWITLKAGK--VWRGEFFNKKKNGE 507

Query: 538 LLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
           L     II  +         Y     DI+E K+  ++L  AK+ AE+    K+ FL  +S
Sbjct: 508 LYWENAIIAPVKNEQGDITNYVAVKEDITERKRLWSELVAAKEKAEESDRLKTCFLENMS 567

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HEIRTP+  I+GFSE++K             EY   I +SG  +L I+NDL+DISKIE+G
Sbjct: 568 HEIRTPMNGILGFSELLKEPLLDGSKKD---EYIELIHQSGKRMLSIINDLIDISKIEAG 624

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS--FANNIPRILADLRSVKQIALNI 711
           ++ + +   SLD+   +  +  +  A  K +L+  +     +   I+ D   + QI  N+
Sbjct: 625 EIAIQYTEASLDKIFHDLQAFFEPQATRKGLLLHCTGCVPPSASVIVTDKSRLVQILTNL 684

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           + NA+ +T SG    I    T N + +   VRDTG+G+ ++  EK    F Q        
Sbjct: 685 VQNALKYTASG---EICFGCTKNGDFLDFYVRDTGIGIPDFLTEKIFDRFRQAQVDPVRE 741

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            EG GLGL ++K++V+   G+  + S+  +G++     P
Sbjct: 742 YEGVGLGLSISKSLVELLGGRIGVQSSAGEGSVFSFSLP 780


>gi|110597907|ref|ZP_01386189.1| PAS:Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A-like [Chlorobium
           ferrooxidans DSM 13031]
 gi|110340484|gb|EAT58970.1| PAS:Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A-like [Chlorobium
           ferrooxidans DSM 13031]
          Length = 892

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 141/785 (17%), Positives = 273/785 (34%), Gaps = 70/785 (8%)

Query: 52  SNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAF 111
            N T + +E   N    +S    VFD +     F   +D  G + + ++   +       
Sbjct: 2   QNSTHKGEEKERNAQQRESTLNAVFDAVDEPA-FI--MDREGTILDANQAFARVYHKEVP 58

Query: 112 KMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSR 171
             I     +++      P       +K +  +     +   +             PI   
Sbjct: 59  ACI-----NINAYDFFPPELAATRRIKAEEVFCTGRRMIYED-EQEGHCYRNTLYPIAGL 112

Query: 172 NREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231
           +   S  + + +              +     F  L E   G   +   ++   +  +  
Sbjct: 113 DGRTS--QLYIVAQDITDLKRAERDAETTQTLFGALKEAVPGAFYMLDAEWHYAAWNAYQ 170

Query: 232 PHL---RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288
             +   R    ++S T   A   D        +    +S + E +    +       + +
Sbjct: 171 RDVVVGRPDAAMASFTAIDAIHPDDRSKVGEKMANIMKSGVEESDVVRVLIQGGPRFRWF 230

Query: 289 FGTLQNNSKESFEYLSHRNHPSLS------AYFDEGENLTPETVDKCPIPFFVYS--HGN 340
             + +    +   +L                     E    +  D+      V     GN
Sbjct: 231 QLSGKRVFIKEKPFLIGVGTDVTEHKMKEDEALHNSEERLRKLFDEHSAVKLVLDPLTGN 290

Query: 341 LFYANPSFLLLTKYKSVD---------DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR 391
           +  AN +      +   +         D      L  LL+  ++S+ N   P    R+D 
Sbjct: 291 IIDANHAAAAFYGWSIDELCRKHIREVDTHPEEELKHLLEQDRVSEKN-QFPFQHRRADG 349

Query: 392 TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV 451
           +          I       L                     I  +  + R  +R+++   
Sbjct: 350 SLRDVEVFSSNINVGGRELLY-------------------AIVHDVTERRAAERELQ--- 387

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
            +L   ++ +   + I + +G I   N A +   GY  E+++ K   +         +  
Sbjct: 388 -KLSVAMQQSHAIVVITDLKGDIEYVNPAFTIASGYSQEEVIGKNPRILQSGTMQQSVYE 446

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQE 567
            L   +        +       K  +      +I  +         +     DI+E K+ 
Sbjct: 447 ELWGTILAG--GVWKGEMYNRRKNGEFYWESAVISPVLNEEGVITNFVAIKEDITEKKKL 504

Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
            ++L  AK+ AE+    K+ FLA +SHEIRTP+  I+G SE++K+     L       Y 
Sbjct: 505 WSELIAAKEHAEESDRLKTAFLANISHEIRTPMNGIVGLSEILKD---PDLSKEEQSLYI 561

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
           + ID+S   +L ++ND++DIS+IE+GK N+      ++  + +  +  +  A +K + + 
Sbjct: 562 DLIDQSCQRLLYLINDIIDISRIEAGKTNVKISRTPVNTTLRDLHAFFKPLAEQKGLRLS 621

Query: 688 TS--FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN-EEVILRVRDT 744
            +   +++   I  D   + QI  N+L NA+ FT  G    I   +  N   +   V D+
Sbjct: 622 CTTGLSDSESVIETDSTKLTQILTNLLQNALKFTREG---HIDFGYARNKNTLEFYVADS 678

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G++     K  + F Q  NS     EG GLGL +++A ++   G   + ST  KG+  
Sbjct: 679 GIGISPDMQTKIFERFRQADNSLTRNYEGAGLGLSISQAYIEMLGGLISVKSTEGKGSEF 738

Query: 805 EIIFP 809
               P
Sbjct: 739 IFTLP 743


>gi|254413254|ref|ZP_05027025.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196179874|gb|EDX74867.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 1658

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 123/735 (16%), Positives = 255/735 (34%), Gaps = 33/735 (4%)

Query: 90   DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
            +       I+    +  G  + ++ G    +          +                  
Sbjct: 693  NGEFCYVSINPTHERMSGLLSSELSGKTPQEALTPETAQAVSQRYHACVASGERMSYEEC 752

Query: 150  WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
              I+G   +  I     P+   N     +R  G        +D + + K L  + + +  
Sbjct: 753  LQIQGKETW-WIT-NLTPLRDSNSRI--YRLIGTSFNI---SDRKQVEKTLQLQAAAMSA 805

Query: 210  IKKGHSSVEKEKYDIFSQQSPP--PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
               G + + +    +   Q+           ++        +     +      +     
Sbjct: 806  ATDGIAILNQRGEYVCLNQAHAQIFGYDSAAQLLGQNWQTLYDISEYQRLLAESIPLLLE 865

Query: 268  SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL-SHRNHPSLSAYFDEGENLTPETV 326
                + +   +  +  T             E    +          A   E ++      
Sbjct: 866  QGYCRTEAQGLRRDGSTFPHEVSVTLLPGGERIGIVRDITERKQAEAALRESQHFVQRIA 925

Query: 327  DKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVD-DIEIAGGLSTLLDAPKLSDNNAIKP 383
            +  P   +++        YAN    +   Y +       A  L TL+    L+   A   
Sbjct: 926  EASPNLLYIFDLNEQRNIYANREMAVFLGYTTEQIQAMGANVLPTLIHPEDLARLPAYFQ 985

Query: 384  VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE-KANQFPENMPQNGIEPEDVDTRI 442
             +   +D        R   ++        +                   G   +  + + 
Sbjct: 986  QVQNAADGEIFEIEYR---VRDANGEWRTLLGRETPFARTADGRVTQLLGTATDITERQQ 1042

Query: 443  NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK--PFTVF 500
             +  ++    +      A   G+   N E      +  +  + GY   +I      + + 
Sbjct: 1043 MEAALQESEQRYELATRAAKVGVWEWNLETNKFYIDPIIKAILGYDETEIANNFNDWIIL 1102

Query: 501  LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSL 556
            +  +  S         L+               K+  +  + +  + +            
Sbjct: 1103 IHPDDQSTFLTATQAHLA-GETSEYRVEHRIMHKDGSIRWIVVRGQAIRDVQGKGIRMIG 1161

Query: 557  TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            T  DI+E K  +  L  AK+ A+  +  KS FLA +SHE+R+PL AI+GF++++ N    
Sbjct: 1162 TNTDITERKLAEIALQEAKEAADAANRAKSTFLANMSHELRSPLNAILGFAQLMSNSVTL 1221

Query: 617  PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
            P    +Y +    I  SG  +L ++N +LD+SKIE+G++ L+    +L   + E   + +
Sbjct: 1222 P---QQYQDNLRIIHHSGEHLLTLINQVLDLSKIEAGRITLNETTFNLHHLLGEVEDMFR 1278

Query: 677  LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
            L  NEK + +R ++A ++P  I  D   ++Q+ +N++SNA+ FT +G  ++      +N+
Sbjct: 1279 LKVNEKGLQLRFNWAADVPATIQTDEIKLRQVLINLVSNAVKFTSAGSVVMNVAQQRTND 1338

Query: 736  E----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
            +    +   ++DTG G+   ELE   + F Q  +  Q +   TGLGLP+ +  +    G+
Sbjct: 1339 DGRMTLYFEIKDTGCGIAADELESIFEAFVQSQSGVQSQSG-TGLGLPITRKFIQLMGGE 1397

Query: 792  FYIFSTPAKGTLIEI 806
              + S  ++GT    
Sbjct: 1398 IRVESQVSQGTTFTF 1412



 Score =  118 bits (297), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 69/580 (11%), Positives = 156/580 (26%), Gaps = 42/580 (7%)

Query: 28  KKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTW 87
           +++D   + +   ++         +         +S+    +++  F    + +      
Sbjct: 245 QQLDYQLQIKNQWRDYEARIVPCSNQEILSIIRDISDRKQAEAQIAFQASLLDQVSNAVI 304

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD-ILHIDPNNHIGDLLKRQNTWYGK 146
             D  G +   ++   +        ++G  + DV+           I   ++    W G+
Sbjct: 305 ATDLAGTIIYTNQFAQRIYQLNPETILGQSILDVTVLPQDKALAQEILAGVQENGYWEGE 364

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
            T+   +G+    P+      I        G+ G  I   +          ++       
Sbjct: 365 FTVQRQDGSTF--PVYATNTLIRDHQGNPIGYVGVSI--DSSAQKQAEEQLRQSKHFIEQ 420

Query: 207 LHEIKKGHSSVEK--EKYDIFSQQSPPPHLRMKNKVSS-----LTEYYAHKDDVLKTEKY 259
           +         +    E  +I+S Q     L    +              H DDV    + 
Sbjct: 421 IAAASPYCLYIYDLIENRNIYSNQEITTILGYTPEQIQAMGETFISSLLHPDDVTIASEQ 480

Query: 260 PLLTSEESSLPEQE------DFHTINLNQYTKKQYFGTLQNNSK--ESFEYLSHRNHPSL 311
               +  +     E      D H      + ++  F    + +        +   +    
Sbjct: 481 LQKLATAADGEILEIEYRMQDSHGKWHTLFGRETVFARTSDGTVKQVIGTVIDISDRKQA 540

Query: 312 SAYFDEGENLTPETVDKCPIP--FFVYSHGNLFYAN-PSFLLLTKYKSVDDIEIAGGLST 368
                  E L        P    F    +     A+  S        S + +E       
Sbjct: 541 EIELRNSEQLYRTMAKHFPNGAIFLFDHNLRYLVADGQSLGKSGSGYSRNVLEGQTIWEA 600

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
           L +          +  +        I     +H +Q                 N   E M
Sbjct: 601 LSEPECALVEPLYRDALAGIEQTLEIPYRHCIHLVQTR------------AVQNDAGEIM 648

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN--REGII--LSTNRAVSKL 484
               +  +  + +  +  +      L SI +     + I++    G    +S N    ++
Sbjct: 649 AGMVVVQDITERKQAEESLRERETFLRSIYDGIEAAVFIVDVLENGEFCYVSINPTHERM 708

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
            G    ++  K     L   T   ++      ++   R + E+      KE   ++  + 
Sbjct: 709 SGLLSSELSGKTPQEALTPETAQAVSQRYHACVASGERMSYEECLQIQGKETWWIT-NLT 767

Query: 545 IKKLPFSSCYSLTMH--DISEWKQEKNKLSHAKKIAEKES 582
             +   S  Y L     +IS+ KQ +  L          +
Sbjct: 768 PLRDSNSRIYRLIGTSFNISDRKQVEKTLQLQAAAMSAAT 807



 Score =  113 bits (282), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 55/536 (10%), Positives = 142/536 (26%), Gaps = 54/536 (10%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNY-AFKMIGMRLCDV-------SDILHIDPNNHIGDLL 137
            +  +A G    +++   + +G      +   +  +        +D  +    + +   L
Sbjct: 37  IFVSEADGKPDYVNQIGKQILGQGGVESVTADQFIETYRIYQAGTDEFYPRNRHPLLQAL 96

Query: 138 KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR--- 194
           + +        +   + T   +P++    PIY      +      +         P    
Sbjct: 97  QGKRVRVDDMEIRHRDRT---IPVEAWGAPIYDCQGTLTHAIAAFV--DISERQPPEQVL 151

Query: 195 ---------------ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP--PHLRMK 237
                             +    +   L           +        +  P  P     
Sbjct: 152 ADYNQKLEQQVAEQTEELRHSQARNQALLAAIPDMIFCSQADGTFIDFKPAPTIPSFAQA 211

Query: 238 NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297
                         D+       +  + + SL   E        Q   +      +    
Sbjct: 212 QDFLGKKPEDVFPLDIA----QKIRAAYQESLVSGEVQQLDYQLQIKNQWRDYEARIVPC 267

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKS 356
            + E LS     S     +         +D+           G + Y N     + +   
Sbjct: 268 SNQEILSIIRDISDRKQAEAQIAFQASLLDQVSNAVIATDLAGTIIYTNQFAQRIYQLNP 327

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
              +      S L       D    + ++    +           T+Q    ++  +   
Sbjct: 328 ETILGQ----SILDVTVLPQDKALAQEILAGVQENGYWEGE---FTVQRQDGSTFPVYAT 380

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR-EGIIL 475
                +     +   G+  +    +  + ++      +  I  A+   + I +  E   +
Sbjct: 381 NTLIRDHQGNPIGYVGVSIDSSAQKQAEEQLRQSKHFIEQIAAASPYCLYIYDLIENRNI 440

Query: 476 STNRAVSKLFGYPVEDILRK---PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
            +N+ ++ + GY  E I        +  L  +  ++ +  L ++ +    + LE      
Sbjct: 441 YSNQEITTILGYTPEQIQAMGETFISSLLHPDDVTIASEQLQKLATAADGEILEIEYRMQ 500

Query: 533 TKEEKLLSLR-----IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
               K  +L                    T+ DIS+ KQ + +L +++++    + 
Sbjct: 501 DSHGKWHTLFGRETVFARTSDGTVKQVIGTVIDISDRKQAEIELRNSEQLYRTMAK 556



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 41/386 (10%), Positives = 100/386 (25%), Gaps = 33/386 (8%)

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
                E  + + +   E Y     + P        +V        H+D  +  E +    
Sbjct: 67  ADQFIETYRIYQAGTDEFYP--RNRHPLLQALQGKRVRVDDMEIRHRDRTIPVEAWGAPI 124

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
            +            +++++    +      N   E       +     +      +    
Sbjct: 125 YDCQGTLTHAIAAFVDISERQPPEQVLADYNQKLE-------QQVAEQTEELRHSQARNQ 177

Query: 324 ETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
             +   P   F       F        +  +    D         +          A   
Sbjct: 178 ALLAAIPDMIFCSQADGTFIDFKPAPTIPSFAQAQDFLGKKP-EDVFPLDIAQKIRAAYQ 236

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
             L   +   +    ++   QW    +  +             N     I  +  D +  
Sbjct: 237 ESLVSGEVQQLDYQLQIKN-QWRDYEARIVPCS----------NQEILSIIRDISDRKQA 285

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF-LE 502
           + ++  +     S+L+  S+ +   +  G I+ TN+   +++    E IL +      + 
Sbjct: 286 EAQIAFQ----ASLLDQVSNAVIATDLAGTIIYTNQFAQRIYQLNPETILGQSILDVTVL 341

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTM 558
               ++    L  +         E       ++     +      +         Y    
Sbjct: 342 PQDKALAQEILAGVQENG---YWEGEFTVQRQDGSTFPVYATNTLIRDHQGNPIGYVGVS 398

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSH 584
            D S  KQ + +L  +K   E+ ++ 
Sbjct: 399 IDSSAQKQAEEQLRQSKHFIEQIAAA 424



 Score = 78.5 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 42/318 (13%), Positives = 89/318 (27%), Gaps = 42/318 (13%)

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEI 362
           ++R+   L A   E E+   + +D  P+  FV    G   Y N     +     V+ +  
Sbjct: 8   ANRDQAVLIAQLQESEHRLKQILDAVPVGIFVSEADGKPDYVNQIGKQILGQGGVESVTA 67

Query: 363 AGGLS-----------------TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ- 404
              +                    L          +  + +   D   I   A    I  
Sbjct: 68  DQFIETYRIYQAGTDEFYPRNRHPLLQALQGKRVRVDDMEIRHRD-RTIPVEAWGAPIYD 126

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
                + A+         Q PE +  +  +  +        ++     +  ++L A  D 
Sbjct: 127 CQGTLTHAIAAFVDISERQPPEQVLADYNQKLEQQVAEQTEELRHSQARNQALLAAIPDM 186

Query: 465 IAIINREGIILSTNRA--------VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           I     +G  +    A             G   ED+        +     +     L   
Sbjct: 187 IFCSQADGTFIDFKPAPTIPSFAQAQDFLGKKPEDVFPLDIAQKI----RAAYQESLVSG 242

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKK 576
               L   L+        E +++           +      + DIS+ KQ + +++    
Sbjct: 243 EVQQLDYQLQIKNQWRDYEARIVPCS--------NQEILSIIRDISDRKQAEAQIAFQAS 294

Query: 577 IAEKESSHK--SDFLARV 592
           + ++ S+    +D    +
Sbjct: 295 LLDQVSNAVIATDLAGTI 312



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/170 (12%), Positives = 52/170 (30%), Gaps = 14/170 (8%)

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490
            G    + D  +   +++    +L  IL+A   GI +   +G     N+   ++ G    
Sbjct: 3   QGFNHANRDQAVLIAQLQESEHRLKQILDAVPVGIFVSEADGKPDYVNQIGKQILGQGGV 62

Query: 491 D-------ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +       I                  H L + L     +  +          + + +  
Sbjct: 63  ESVTADQFIETYRIYQAGTDEFYPRNRHPLLQALQGKRVRVDDMEIRHRD---RTIPVEA 119

Query: 544 IIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
               +               DISE +  +  L+   +  E++ + +++ L
Sbjct: 120 WGAPIYDCQGTLTHAIAAFVDISERQPPEQVLADYNQKLEQQVAEQTEEL 169


>gi|78776420|ref|YP_392735.1| multi-sensor hybrid histidine kinase [Sulfurimonas denitrificans DSM
            1251]
 gi|78496960|gb|ABB43500.1| PAS/PAC sensor hybrid histidine kinase [Sulfurimonas denitrificans
            DSM 1251]
          Length = 1452

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 123/787 (15%), Positives = 259/787 (32%), Gaps = 95/787 (12%)

Query: 86   TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD--------------ILHIDPNN 131
             + ID +G    I+++    +G    +++     D+                 +++   +
Sbjct: 343  VYGIDNNGNCTWINKKALNMLGYSEKEILHKNQHDIFHSHKPSREKYNADECPINLTSKD 402

Query: 132  HIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN 191
             +   L               +G+ L + + + ++                +        
Sbjct: 403  KVTRTLNEH--------FIKKDGSLLPIILTVTSI---DEGGAIV------VFRDISNSI 445

Query: 192  DPRALGKRLDKKFSHLHEIKKGHSSVEKEK--------YDIFSQQSPPPHLRMKNKVSSL 243
                  KR +++     +                     D    +     +       S 
Sbjct: 446  AKEQALKRSERELRLEKQRLDAIIQGTNVGTGEWNIQTGDTIFNERWAEIIGYTLDEISP 505

Query: 244  TE-------YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ-NN 295
            T         +       K      L  +      +      N +           + + 
Sbjct: 506  TSIDTWEKFSHPDDFIATKKLLEEHLDGKTEYFESEMRMKHKNGHWVWVVDRAKVFEWDK 565

Query: 296  SKESFEYLSHRNHPSLSAYFDE----GENLTPETVDKCPIPFFVYS-HGNLFYANPSFLL 350
              +           +      E      N     ++  P   ++   +G     N  F  
Sbjct: 566  DGKPVLMSGTHQDITERKLAQEKIEHINNQLESLLESIPDLIWMKDVNGVYITCNKRFED 625

Query: 351  LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
                   +     G       + +L+D           S+            +     + 
Sbjct: 626  FFGASLDEI---KGKTDYDFVSKELADFFREHDKKAMHSNVPLTNFEEITFAV---DSHK 679

Query: 411  LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA--II 468
              +         +  E +   GI  +  + + +++K+      L    + +  G    ++
Sbjct: 680  EFLQTTKTAVRGRNGEILGILGIGRDLSELKRSEQKLRDSKELLDLFFKQSMHGFFFMML 739

Query: 469  NR-------------------EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
            +                       +   N A+ + +    E+ L    T F + N     
Sbjct: 740  DEPIEWNDSIDKEKTLDYVFEHQRVTKINEAMLEQYKAKEEEFLGFTPTDFFKHNIEEG- 798

Query: 510  NHYLTEILSLDLRQTLEKITLGS----TKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
                 E+ S  +                 +   + L     K+     +     +I++  
Sbjct: 799  RDIWRELFSRGIYHVNTNEQKFDGTPMVIDGDYICLYNSEGKIT---GHFGVQREITQDI 855

Query: 566  QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
            ++K  L  AK+ AE+ ++ KS+FLA +SHEIRTP+ AIIGFSE++         + + + 
Sbjct: 856  RDKEALQEAKEEAERANNSKSEFLANMSHEIRTPMNAIIGFSEILLESDL----DEKQLH 911

Query: 626  YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
              + I+ S  ++L I+ND+LD SKIE+ ++ +     +L+  +S+   L +  A +K + 
Sbjct: 912  QLHKINSSSKMLLSIINDILDFSKIEANRLEIEHREFNLESILSKIKMLFKQTALDKGLE 971

Query: 686  IRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQ---IIISTTHTSNEEVILRV 741
               +    +P  ++AD   + Q+ +N+L NAI FT  G     + IS     +  ++  V
Sbjct: 972  FYCNVEEGVPSMVVADELRITQVLINLLGNAIKFTKEGAVKVDLKISKKDEKSATLLFSV 1031

Query: 742  RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
             D+G+G++  ++EK  KPF Q  +S   R  G+GLGL ++  +V A  G+  + S    G
Sbjct: 1032 IDSGIGISQNQIEKLFKPFSQADDSITRRYGGSGLGLSISSRLVSAMGGEIDVKSKEGVG 1091

Query: 802  TLIEIIF 808
            +      
Sbjct: 1092 STFSFEI 1098



 Score = 73.1 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 51/149 (34%), Gaps = 15/149 (10%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
             +       + S+L    +G+  I+  G     N+    + GY  ++IL K        
Sbjct: 322 HLRERRRKNFISSLLSNIGEGVYGIDNNGNCTWINKKALNMLGYSEKEILHKNQHDIFHS 381

Query: 504 NTPS-----VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM 558
           + PS          +       + +TL +  +   K+  LL + + +  +       +  
Sbjct: 382 HKPSREKYNADECPINLTSKDKVTRTLNEHFI--KKDGSLLPIILTVTSI-DEGGAIVVF 438

Query: 559 HDIS-------EWKQEKNKLSHAKKIAEK 580
            DIS         K+ + +L   K+  + 
Sbjct: 439 RDISNSIAKEQALKRSERELRLEKQRLDA 467


>gi|302879767|ref|YP_003848331.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
           ES-2]
 gi|302582556|gb|ADL56567.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
           ES-2]
          Length = 1233

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 123/765 (16%), Positives = 263/765 (34%), Gaps = 46/765 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCD----VSDILHIDPNNHIGDLLKRQN 141
            +  D  G L  ++    K +G    ++IG+ + +    +              L   ++
Sbjct: 81  VYATDLEGCLTFMNAAAEKKLGWSEQELIGLPVQEHVQCLLPDGSAQQPEDCPHLKSIRD 140

Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFR---GFGIVHVNRVDNDPRA--- 195
               +            +P++  + PI  +N + SG         +H+   +    A   
Sbjct: 141 GVSLQANAIFSGRNGELIPVEFRSSPIL-QNGKVSGALVSFQDTSLHIEAANKLRLANDK 199

Query: 196 ---LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD- 251
                + L+ +   L E      + ++      +++         ++++       +   
Sbjct: 200 LSSALRELEFQQLALDEHAIVSIADKRGCIVYVNRKFSEISQYTTDQLTGQDHRILNSGY 259

Query: 252 -DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310
                                +      +   Y  +       +       Y+S R   +
Sbjct: 260 HSRAFFTDMWRTIEGGQVWHGEVRNRRRDGTFYWVESTIVPFMDEEGRPERYISVRTDIT 319

Query: 311 LSAYFDEG----ENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGG 365
                +E             +      +V    G   Y N     +  +   +++     
Sbjct: 320 ARKMLEEQLSEQRAFYERISETMGEGLYVQDSEGRCTYMNSEAEHMLGWTR-EELLGRPV 378

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT-IQWNRENSLAMTFIPFEKANQF 424
             T+       D    +   +  + R            ++ +               +  
Sbjct: 379 HDTIHCVTAEGDVLPAEQCPILLAVRKNGDWQGDDQVFVRKDGTTFPVEGTSRAIIRDGV 438

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
                      +  + + ++R + +   +L   LE +   +   +     +  +   S +
Sbjct: 439 SY--GSVVAFSDISERKNSERIVRLAQERLNLALEGSGLALWDWDVAHDQVYLSDRWSLI 496

Query: 485 FGYPVEDILRKP--FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
            G  +++++         +  +  + +   L  +L     +          ++   + + 
Sbjct: 497 LGDELQEVVITSTQLFSLVHADERAKIESDLVAVLK-GQNEFYSVEFRVQRRDGVWIWIH 555

Query: 543 III-KKLPFSSCYSLTMH----DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
                    S+     M     DI+  ++ +  L  AK+ AE  S  K DFLA +SHEIR
Sbjct: 556 THGKVVDRDSNGRVTRMTGTNADITARREAEAALRQAKEAAEAASRAKGDFLANMSHEIR 615

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TP+  IIG +E+  +       N    EY   +  S + +L I+ND+LD SKIESGK+++
Sbjct: 616 TPMNGIIGMTELALDTEL----NSEQREYLGLVQSSADALLTILNDILDFSKIESGKLDI 671

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAI 716
                SL+  + E +  + + A++K++ +    A ++P  +L D   ++Q+ +N++ NAI
Sbjct: 672 ENIEFSLEHMLRETMKSLAVRAHQKQLELLLHVAPDVPDRLLGDPGRLRQVIVNLVGNAI 731

Query: 717 HFTPSGGQIIISTTH-----TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
            FT SG +I +              +   VRDTG+G+   + +   + F Q   S   R 
Sbjct: 732 KFTASG-EIEVDVQCLKGAPEGQMRMQFSVRDTGIGIARDKFQTIFESFSQADTSTTRRY 790

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF--PLYDTS 814
            GTGLGL ++  +V    G   + S   +G+        P+   S
Sbjct: 791 GGTGLGLTISAQLVSLMGGSIALESEVGQGSNFYFTLDMPMLSVS 835



 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/214 (14%), Positives = 68/214 (31%), Gaps = 13/214 (6%)

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
           + +    L R       A A L        + L +    + + ++    +  +       
Sbjct: 2   HRLLERQLRRQLGKDFQADAALT-------SFLDIVDSYYHEVDKEQRLLQNSLSMNTAE 54

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF- 497
              +N+R          ++L   SDG+   + EG +   N A  K  G+  ++++  P  
Sbjct: 55  LNAVNERMRIQNTEMTRTLLNTLSDGVYATDLEGCLTFMNAAAEKKLGWSEQELIGLPVQ 114

Query: 498 --TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--- 552
                L  +  +        + S+    +L+   + S +  +L+ +      +  +    
Sbjct: 115 EHVQCLLPDGSAQQPEDCPHLKSIRDGVSLQANAIFSGRNGELIPVEFRSSPILQNGKVS 174

Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
              ++  D S   +  NKL  A            
Sbjct: 175 GALVSFQDTSLHIEAANKLRLANDKLSSALRELE 208


>gi|268315760|ref|YP_003289479.1| PAS/PAC sensor signal transduction histidine kinase [Rhodothermus
           marinus DSM 4252]
 gi|262333294|gb|ACY47091.1| PAS/PAC sensor signal transduction histidine kinase [Rhodothermus
           marinus DSM 4252]
          Length = 691

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 119/627 (18%), Positives = 234/627 (37%), Gaps = 23/627 (3%)

Query: 191 NDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK 250
                +       F H  E         K      +      + + +             
Sbjct: 67  RQRAEVLATYQAFFEHALEGIFQADRKGKLLAVNPALARMLGYEQPEQLQGLHLATDVLA 126

Query: 251 DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310
           +          L +  +           N   +  +      +             +   
Sbjct: 127 EATEFEHLLLQLEAHGAVRNHYLQLRRRNGEVFWARMNIW--KREELFEGTVEDVSSLQE 184

Query: 311 LSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
             A     E      ++  P+  +     G +  ANP+   +  Y+SV+ +  A   S L
Sbjct: 185 AEAALRASEARYQALLEHLPVGVYRSTPDGTIRTANPAAARMLGYESVEALLRANARS-L 243

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
              P   +          +  R    A+A L   + +        +            + 
Sbjct: 244 YVDPAQREA-------FLKQLREKGEATAELALRRPDGTIIWVQNYARCIVE--QDGQVY 294

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
            +G+  +  + +  ++ ++    +   +LE   + + + + E  IL  N A +   G   
Sbjct: 295 FDGVLIDITERKQARQALQETEERYRQLLEQLPEPVVVHDGE-TILYANAAAAAFAGLSS 353

Query: 490 -EDILRKPFTVFLEQNTPSVMNHYLT-EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
            E+++ K    FL       +  YL   +        +E+  + +    + + +   + +
Sbjct: 354 SEELIGKSIYQFLRTEKADAIRRYLEMAVQQGRQLPPMEQQMVRADGAVRDVEIVSALVQ 413

Query: 548 LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
                 + + + DI+E KQ +  L  AK+ AE+ +  KS  L+ +SHEIRTPL  +IGF+
Sbjct: 414 YQGRPAFQVVLRDITERKQYERHLLEAKERAEEIARLKSTLLSNISHEIRTPLAGVIGFA 473

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
           EV++ +      +  + E A  I  SG  +L+ +N LLD+++IE+G   L  EP    + 
Sbjct: 474 EVLEEEL-----DEPHRELAALIRDSGRRLLETLNTLLDLARIEAGAFVLTPEPFDAADE 528

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727
           V +++ + Q   ++K + +     +    +  D     +I +N++SNA+ FT  G  I +
Sbjct: 529 VRQSVRIFQRMIDDKGLRLELDLPDAPLPVYLDRNGFHRIVVNLVSNAVKFTDEG-MIRV 587

Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
                  + + L+V+DTGVG+    +    + F Q  N       G+GLGL +   +V+ 
Sbjct: 588 GLAAE-GDWLRLQVQDTGVGIDPAFMPHLFEEFRQENNGLARTHPGSGLGLAITHRLVEM 646

Query: 788 NMGKFYIFSTPAKGTLIEIIFPLYDTS 814
             G+  + S   KGT   +  PL  T+
Sbjct: 647 MGGRIEVQSEKGKGTTFTVWLPLRLTN 673



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 35/383 (9%), Positives = 90/383 (23%), Gaps = 21/383 (5%)

Query: 80  PRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR 139
              +   +  D  G L  ++  L + +G    + +         +       H+   L+ 
Sbjct: 81  EHALEGIFQADRKGKLLAVNPALARMLGYEQPEQLQGLHLATDVLAEATEFEHLLLQLEA 140

Query: 140 QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199
                                  +    I+ R   F G      V       +  A  + 
Sbjct: 141 HGAVRNHYLQLRRRN-GEVFWARMN---IWKREELFEG-----TVEDVSSLQEAEAALRA 191

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
            + ++  L E              I +       +     V +L    A    V   ++ 
Sbjct: 192 SEARYQALLEHLPVGVYRSTPDGTIRTANPAAARMLGYESVEALLRANARSLYVDPAQRE 251

Query: 260 PLLTSEESS--LPEQEDFHTINLNQYTKKQYFGTLQNNSKES---FEYLSHRNHPSLSAY 314
             L           +      +      + Y   +     +       +           
Sbjct: 252 AFLKQLREKGEATAELALRRPDGTIIWVQNYARCIVEQDGQVYFDGVLIDITERKQARQA 311

Query: 315 FDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
             E E    + +++ P P  V+    + YAN +        S +++        L     
Sbjct: 312 LQETEERYRQLLEQLPEPVVVHDGETILYANAAAAAFAGLSSSEELIGKSIYQFLRTEK- 370

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
              +   + + +       +        ++ +             +    P       + 
Sbjct: 371 --ADAIRRYLEMAVQQGRQLP-PMEQQMVRADGAVRDVEIVSALVQYQGRP---AFQVVL 424

Query: 435 PEDVDTRINKRKMEIEVMQLCSI 457
            +  + +  +R +     +   I
Sbjct: 425 RDITERKQYERHLLEAKERAEEI 447



 Score = 62.7 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/393 (8%), Positives = 114/393 (29%), Gaps = 23/393 (5%)

Query: 55  TDQNQESVSNTNYLDSENTFVFDPIPRTVRF-TWNIDAHGYLKEISEELPKTIGNYAFKM 113
           T ++  S+         +   +  +   +    +     G ++  +    + +G  + + 
Sbjct: 175 TVEDVSSLQEAEAALRASEARYQALLEHLPVGVYRSTPDGTIRTANPAAARMLGYESVEA 234

Query: 114 IGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNR 173
           +         +        +  L ++           P +GT ++V      +       
Sbjct: 235 LLRANARSLYVDPAQREAFLKQLREKGEATAELALRRP-DGTIIWVQNYARCIVEQDGQV 293

Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF--SQQSPP 231
            F G     ++         R   +  ++++  L E       V   +  ++  +  +  
Sbjct: 294 YFDG-----VLIDITERKQARQALQETEERYRQLLEQLPEPVVVHDGETILYANAAAAAF 348

Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE-DFHTINLNQYTKKQYFG 290
             L    ++   + Y   + +     +  L  + +        +   +  +   +     
Sbjct: 349 AGLSSSEELIGKSIYQFLRTEKADAIRRYLEMAVQQGRQLPPMEQQMVRADGAVRDVEIV 408

Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLL 350
           +     +    +       +    ++       E  ++      +    +   +N S  +
Sbjct: 409 SALVQYQGRPAFQVVLRDITERKQYERHLLEAKERAEE------IARLKSTLLSNISHEI 462

Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
            T       +    G + +L   +L + +     ++  S R  +     L  +      +
Sbjct: 463 RTP------LAGVIGFAEVL-EEELDEPHRELAALIRDSGRRLLETLNTLLDLARIEAGA 515

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
             +T  PF+ A++  +++       +D   R+ 
Sbjct: 516 FVLTPEPFDAADEVRQSVRIFQRMIDDKGLRLE 548


>gi|288942043|ref|YP_003444283.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
 gi|288897415|gb|ADC63251.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
          Length = 1450

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 129/671 (19%), Positives = 235/671 (35%), Gaps = 46/671 (6%)

Query: 173 REFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP 232
           R     R        R   +     + +     +    +            I +      
Sbjct: 267 RRAVTVRTAEYARAERALREREWQLRSVGDNLPNGVVFQYEVMDGCPRFRYISAGVERTL 326

Query: 233 HLRMKNKVSSLTEYYAHKDDVL---KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYF 289
             R +         +A     +    T+         S       F   +  Q     + 
Sbjct: 327 GYRPEQMTHDAGPLFALMSPAVLKEYTKAEAKSAETLSDFSGLLPFDLPDGRQRWLLVHS 386

Query: 290 GTLQNNSKES---FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANP 346
              +            L   +     A   E E       ++      +   G    AN 
Sbjct: 387 RPRRTAEGAVIWDGVALDVTDQREAEARLIESEQRFRRLFEQSKQAITLIEDGCFVDANQ 446

Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
           + L + + +S +            +       +A K   L    R   ++      ++ +
Sbjct: 447 AALDMLRLESREQFLGLKPSDISPEYQPDGRLSAEKAQELLHVARESGSSRFEWEHVRAD 506

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA------ 460
            E+  A           F E    + +  +  + +  + ++     +L S++E       
Sbjct: 507 GEHFFA---DVLLTPMVFGECQQIHVVWQDITEKKHAEAELARYQRELESLVEQRTSELR 563

Query: 461 ---------------TSDGIAI--INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
                             GI+   ++  G  L  N  + +  GY  E++L    +    +
Sbjct: 564 HSNERLAHTQFAMDRVGIGISWNSVDT-GHFLYVNDELCRQLGYTYEELLSLTVSDVNHE 622

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCYSLTMHDI 561
             P+ +     E+      + L   T    K+     +   I   + P    +     DI
Sbjct: 623 YPPAAVRQVADELR--GSSRCLRLETRHWRKDGSTYPVSTTIYLHQAPGEEWFIAFFEDI 680

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           +  K  + +L  AK+ AE+ +  KS+FLA +SHEIRTP+ AIIG + +          + 
Sbjct: 681 TARKLVEAELLRAKEQAEEATQAKSNFLANMSHEIRTPMNAIIGMAHLALQTPL----DA 736

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
           R  +Y   + RS   +L I+ND+LD SKIE+G++++      L++ +    +LV L A +
Sbjct: 737 RQRDYIEKVHRSAEALLGILNDILDFSKIEAGRLDIEQIDFRLEDVMDNLANLVGLKAED 796

Query: 682 KRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE--EVI 738
           K + +       +P  ++ D   + QI  N+ +NA+ FT  GG+I+I     +     V 
Sbjct: 797 KGLELMFDLPPEVPTALIGDALRLGQILTNLGNNAVKFTEPGGEILIGVRVEAEGADWVC 856

Query: 739 --LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
               VRDTG+GMT  +  +  + F Q   S   R  GTGLGL + K + +   G+  + S
Sbjct: 857 LGFEVRDTGIGMTPEQCGRLFESFSQADMSTTRRYGGTGLGLAICKYLTELMGGEIGVES 916

Query: 797 TPAKGTLIEII 807
            P  GT     
Sbjct: 917 EPGAGTCFRFS 927



 Score = 73.9 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 49/469 (10%), Positives = 113/469 (24%), Gaps = 80/469 (17%)

Query: 94  YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ----NTWYGKTTL 149
             + IS  + +T+G    +M      D   +  +     + +  K +     T    + L
Sbjct: 314 RFRYISAGVERTLGYRPEQMT----HDAGPLFALMSPAVLKEYTKAEAKSAETLSDFSGL 369

Query: 150 WPIEGTNLY-VPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
            P +  +     + + + P  +           G+        +  A     +++F  L 
Sbjct: 370 LPFDLPDGRQRWLLVHSRPRRTAEGAVI---WDGVALDVTDQREAEARLIESEQRFRRLF 426

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV------SSLTEYYAHKDDVLKTE-KYPL 261
           E  K   ++ ++   + + Q+    LR++++        S        D  L  E    L
Sbjct: 427 EQSKQAITLIEDGCFVDANQAALDMLRLESREQFLGLKPSDISPEYQPDGRLSAEKAQEL 486

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGT-----------------------LQNNSKE 298
           L     S   + ++  +  +                                  +     
Sbjct: 487 LHVARESGSSRFEWEHVRADGEHFFADVLLTPMVFGECQQIHVVWQDITEKKHAEAELAR 546

Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV----YSHGNLFYANPSFLLLTKY 354
               L        S      E L         +   +       G+  Y N        Y
Sbjct: 547 YQRELESLVEQRTSELRHSNERLAHTQFAMDRVGIGISWNSVDTGHFLYVNDELCRQLGY 606

Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
              + +     L+      +       +     R   +           + +       T
Sbjct: 607 TYEELL----SLTVSDVNHEYPPAAVRQVADELR--GSSRCLRLETRHWRKDGSTYPVST 660

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC-------SILEATS----- 462
            I      Q P          +    ++ + ++     Q         + L   S     
Sbjct: 661 TIYLH---QAPGEEWFIAFFEDITARKLVEAELLRAKEQAEEATQAKSNFLANMSHEIRT 717

Query: 463 --DGIAI---------INREGI--ILSTNRAVSKLFGYPVEDILRKPFT 498
             + I           ++      I   +R+   L G   + +      
Sbjct: 718 PMNAIIGMAHLALQTPLDARQRDYIEKVHRSAEALLGILNDILDFSKIE 766



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 52/525 (9%), Positives = 142/525 (27%), Gaps = 50/525 (9%)

Query: 87   WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR-QNTWYG 145
            WN    G+   +++EL + +G    +++ + + DV+          + D L+        
Sbjct: 585  WNSVDTGHFLYVNDELCRQLGYTYEELLSLTVSDVNHEYPPAAVRQVADELRGSSRCLRL 644

Query: 146  KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF-GIVHVNRVDNDPRALGKRLDKKF 204
            +T  W  +G+   V   +          +  G   F              A   R  ++ 
Sbjct: 645  ETRHWRKDGSTYPVSTTIYLH-------QAPGEEWFIAFFEDITARKLVEAELLRAKEQA 697

Query: 205  SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
                + K    +    +            + M +           +D + K  +      
Sbjct: 698  EEATQAKSNFLANMSHEIRTPMNA----IIGMAHLALQTPLDARQRDYIEKVHRSAEALL 753

Query: 265  EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
                L +  DF  I   +   +Q    L++        +  +          +     P 
Sbjct: 754  GI--LNDILDFSKIEAGRLDIEQIDFRLEDVMDNLANLVGLKAEDKGLELMFDLPPEVPT 811

Query: 325  TV--DKCPIPFFVYSHGN--LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
             +  D   +   + + GN  + +  P   +L   +   +     G   +    ++ D   
Sbjct: 812  ALIGDALRLGQILTNLGNNAVKFTEPGGEILIGVRVEAE-----GADWVCLGFEVRDTGI 866

Query: 381  IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN---GIEPED 437
                          +  A + T +      L +    +       E   ++         
Sbjct: 867  GMTPEQCGRLFESFS-QADMSTTRRYGGTGLGLAICKYLTELMGGEIGVESEPGAGTCFR 925

Query: 438  VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
               R+ +++   E   L    E     + +++        N +   +  + ++ +     
Sbjct: 926  FSVRLGRQRAAPEGA-LHVARELLPLRVLVVDD-------NASARAILTHMLQQLG---- 973

Query: 498  TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE-------KLLSLRIIIKKLPF 550
                     S     +  + +++ +   + + L             + L     + ++P 
Sbjct: 974  ---FGAEAVSSGAEAIARLRAVETQAPFDLMLLDWKMPGLDGVQTIRALRAEAAVSQVPA 1030

Query: 551  SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
                +    +          ++         S+  +  +  + HE
Sbjct: 1031 LIMITAYGREGVRQASADLGVAGFLTKPVAPSALLNTLMHAIGHE 1075


>gi|189424785|ref|YP_001951962.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189421044|gb|ACD95442.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 881

 Score =  379 bits (973), Expect = e-102,   Method: Composition-based stats.
 Identities = 125/730 (17%), Positives = 245/730 (33%), Gaps = 106/730 (14%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDIL---HIDPNNHIGDLLKRQNTWYGKTTLWP 151
           L E++ +    +        G     V        +D   +  + +       G+   + 
Sbjct: 93  LNELNPQYANIL---VTDRTGKTWAAVFMPPPPAMLDDRRYFKNAIASGRLSSGE---YV 146

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
           +  +    P+   A P      +  G                  L        +      
Sbjct: 147 VSKSMTNKPVFHFAYPYRDAAGKIGGVIVVAF-----------RLDTYSTVLRNSPLPAG 195

Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271
                ++     +     P   +  K    S  E  A  D+                   
Sbjct: 196 TNFLLLDHAGVIMHRALEPEKIIGKKYPEVSFKEMLAGPDEYSYRGPASF---------- 245

Query: 272 QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI 331
                    ++         LQ  +             +  A  D+    +         
Sbjct: 246 --------GDERFISYRKIRLQGEADPYMYVRVGVPVKTTLAAADQTMLKSIAFFGTFLC 297

Query: 332 PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR 391
             F+ ++                     I        ++   + S   A   +    +  
Sbjct: 298 GAFLLAY--------------------LIGKRSIADRIILLEQASQRLASGEMQTQVAS- 336

Query: 392 TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK--MEI 449
                                               + +     + +  ++ +R+  +  
Sbjct: 337 ------------------------------AVSGGEIGRLAESFDTMARQLTEREQVIRE 366

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ-NTPSV 508
             ++L SI ++  D I +++ +G I   N A   + GY  E+ L K   + L        
Sbjct: 367 SEVRLRSITDSAQDAILMMDDQGAITFWNPAAETILGYKAEEALGKDLHLLLAPLRYQQA 426

Query: 509 MNHYLTEILSLDLRQTLEK--ITLGSTKEEKLLSLRIIIKKLPFSSCYSLT--MHDISEW 564
                +  +       + K        K+ + + + + +  +  +  +     + DI+E 
Sbjct: 427 FQKAFSVFVQTGRGHAVGKTVELAAKRKDGQEIVVSLSLSAVFLNGRWYAVGLLRDITES 486

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           K  + +L  A+  AE  +  KS+FLA +SHEIRTP+  ++G +++++  +          
Sbjct: 487 KHYQEELLEARHSAEAANRAKSEFLANMSHEIRTPMNGVVGMAQLLRYTQ----PTREQE 542

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           EY + ++ S   +L+++ND+LD+S+IESGK+ L     SL   + E +S       +K +
Sbjct: 543 EYLDNLELSCKNLLELINDILDLSRIESGKLELEAAVFSLRSCIQEVVSNQASRIEQKGL 602

Query: 685 LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIS----TTHTSNEEVIL 739
            + TS    +P  ++ D    KQI LN+L NAI FT +G  I +S    +   +     L
Sbjct: 603 QLLTSLDEQVPEQVVGDSLRFKQILLNLLGNAIKFTEAGS-ITVSGQISSRQETGCTFRL 661

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V DTG+GMT   L++    F Q  +S      G+GLGL + + + +   G+ +  ST  
Sbjct: 662 MVSDTGIGMTEETLQRIFNSFEQADSSTTRVYGGSGLGLAICRRLTELMGGRIWAESTFG 721

Query: 800 KGTLIEIIFP 809
           KG+   +  P
Sbjct: 722 KGSAFFVELP 731



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/145 (11%), Positives = 38/145 (26%), Gaps = 16/145 (11%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK-----RQNTW 143
           +D  G +   +      +G  A + +G  L  +     +                 +   
Sbjct: 385 MDDQGAITFWNPAAETILGYKAEEALGKDLHLLLAP--LRYQQAFQKAFSVFVQTGRGHA 442

Query: 144 YGKTTLW---PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
            GKT        +G  + V + L+A+ +  R      +   G++         +      
Sbjct: 443 VGKTVELAAKRKDGQEIVVSLSLSAVFLNGR------WYAVGLLRDITESKHYQEELLEA 496

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIF 225
                  +  K    +    +    
Sbjct: 497 RHSAEAANRAKSEFLANMSHEIRTP 521


>gi|239907500|ref|YP_002954241.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239797366|dbj|BAH76355.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 1133

 Score =  379 bits (973), Expect = e-102,   Method: Composition-based stats.
 Identities = 115/635 (18%), Positives = 232/635 (36%), Gaps = 37/635 (5%)

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
                 +        +    +        P          +  ++       V       
Sbjct: 243 QGPDDEMQRAVFAPVAAPGGQRLFIRLSQPQAIHEALLIGAWQSDMLLFGLAVALALAAA 302

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
              +    L     F  +  +         +    SK     L            +    
Sbjct: 303 WWFNRVFLLRPMGQFVAMATDMAAGNLDRRSGLAESKGEMGELGRALDAMADKLKERI-R 361

Query: 321 LTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
            T E +D  P+P F           N ++                 L+ +          
Sbjct: 362 FTQELIDAIPVPVFYKDLESRYLGCNAAYER-----------AIRPLARIRRRTVHDLEL 410

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQ----WNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
             +  +  ++DR  ++  A     +    +  +    +        +         G+  
Sbjct: 411 PAQAALCAKTDRAVLSGEAETVEYETSLLFRDQTVHDVVVFKSRFHDVAGRTAGVIGVLL 470

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
           +    + ++ ++     +   +L++  DG  +++ +  ++ +N A  ++ GY  +++ + 
Sbjct: 471 DITGRKCSEAELLASRTRYKLLLDSMGDGFVVLSSDYRLVESNPAFQEMTGYGPDELEKM 530

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF----S 551
            +     +         L E+ +    +  EK      K+  +L + +   + P      
Sbjct: 531 TYRDITPEAWHKPEERLLAEVDAKGSAEVFEKE--YRRKDGSILPVAVRPHRHPESPGED 588

Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
             Y   + DI++ K  +  L  AK+ AE  +  KSDFLA++SHEIRTPL A+IG +E+  
Sbjct: 589 RRYFAVVRDIADVKAIEADLRQAKEAAETANRAKSDFLAKMSHEIRTPLHAVIGMTEL-- 646

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
               G   +P+  +       +   +L I+ND+LD+S+IE+  + L  +   L   ++  
Sbjct: 647 --TLGTELSPQQRDALETAREAAGNLLGIINDVLDLSRIEAKGLELVIQDFDLRRTLAGV 704

Query: 672 ISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIIST 729
              ++  A  K + +  + A N PR +  D   V+QI LN++ NA+ FT  GG  + ++ 
Sbjct: 705 ARTLRPQAARKGLFLTLAVAPNTPRHVRGDQGRVRQILLNLVGNAVKFTREGGVTVTVAA 764

Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
                 ++ L V DTG+G+    LE+    F Q   +  +   GTGLGL + + +V +  
Sbjct: 765 PDGDPGQLELAVADTGIGIAPDRLERIFDMFTQADRTVALNFGGTGLGLAICRELVRSMG 824

Query: 790 GKFYIFSTPAKGTLIEIIF--------PLYDTSHP 816
           G+  + S P +GT+  +          P+     P
Sbjct: 825 GEIAVDSVPGQGTVFRVKLRLTPAQVVPIEPARRP 859



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/448 (9%), Positives = 112/448 (25%), Gaps = 26/448 (5%)

Query: 94  YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTWYGKTTLWPI 152
            L E +    +  G    ++  M   D++      P    + ++  + +    +      
Sbjct: 508 RLVESNPAFQEMTGYGPDELEKMTYRDITPEAWHKPEERLLAEVDAKGSAEVFEKEYRRK 567

Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212
           +G+ L V +     P           R F +V          A  ++  +     +  K 
Sbjct: 568 DGSILPVAV----RPHRHPESPGEDRRYFAVVRDIADVKAIEADLRQAKEAAETANRAKS 623

Query: 213 GHSSVEKEKYDIF------SQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
              +    +            +          +  +L        ++L      L  S  
Sbjct: 624 DFLAKMSHEIRTPLHAVIGMTELTLGTELSPQQRDALETAREAAGNLLGIINDVLDLSRI 683

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
            +   +      +L + T      TL+  +     +L+    P+   +    +    + +
Sbjct: 684 EAKGLELVIQDFDL-RRTLAGVARTLRPQAARKGLFLTLAVAPNTPRHVRGDQGRVRQIL 742

Query: 327 DKC-PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIE-IAGGLSTLLDAPKLSDNNAIKPV 384
                        G +     +         +   +   G     L+        A + V
Sbjct: 743 LNLVGNAVKFTREGGVTVTVAAPDGDPGQLELAVADTGIGIAPDRLERIFDMFTQADRTV 802

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
            L           A    +  +    +A+  +P +      +              R   
Sbjct: 803 ALNF--GGTGLGLAICRELVRSMGGEIAVDSVPGQGTVFRVKLRLTPAQVVPIEPARRPV 860

Query: 445 RKMEIEVMQLCSILE-----ATSDGIAIINREGI--ILSTNRA-VSKLFGYPVEDILRKP 496
              + +   L  ++              +NR G    ++ N A   +  G+   D++   
Sbjct: 861 AAPQADARPLRVLVAEDNPINVKVATTFLNRRGHQATVAANGARALECLGHETFDLVLMD 920

Query: 497 FTV--FLEQNTPSVMNHYLTEILSLDLR 522
             +           +   L    +  + 
Sbjct: 921 VEMPELDGMEATRRLRAGLAGEANRRVP 948


>gi|332704625|ref|ZP_08424713.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332554774|gb|EGJ51818.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 1051

 Score =  378 bits (972), Expect = e-102,   Method: Composition-based stats.
 Identities = 129/794 (16%), Positives = 257/794 (32%), Gaps = 54/794 (6%)

Query: 44  PCHDSFEQSNFTDQNQESVSNTNYLDS---ENTFVFDPIPRTVRF-TWNIDAHGYLKEI- 98
           P  D     +        V+ T   ++   E+   F           +  D       + 
Sbjct: 132 PIRDEQGAVSGAVAIARDVTKTRKAEAALRESDESFQVALTHTPVMVFAADMDQRFSWVF 191

Query: 99  SEELPKTIGNYAFKMIGMRLCDVSDILHI-DPNNHIGDLLKRQNTWYGKTTLWPIEGTNL 157
           +       G  A ++IG  L ++       +    + +L++       +  +    G   
Sbjct: 192 NPPF----GLTAEEIIGKTLQELIKPEDASEVQALVSELIESGRA-IRQEVVIRFRGRET 246

Query: 158 YVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSV 217
              + +   P        SG    G+ +            ++ D+KF  +  +     ++
Sbjct: 247 CWDVTI--EPRRDVRGVISGL--IGVAYDLTERRWAEKAREQSDEKFRRIFHLSPAILAI 302

Query: 218 ----EKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE 273
               +    D+    S       +              +  +         E  SL  + 
Sbjct: 303 STLQDGVYLDVNEAFSKLLGYSREEVTGKNAFELQLWAEPAQRNLLAAQLKERGSLRSRL 362

Query: 274 DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT---PETVDKCP 330
             +     +         L     +     +  +        D            V+   
Sbjct: 363 VRYRCKSGEIKTLVISAELMEVEGQQCVLAAASDFTMQQRRHDAIRKREMEWRAIVENTS 422

Query: 331 IPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389
                +       Y N +   +T     + +  A           +    A+K V     
Sbjct: 423 DIIARIDHESRYTYINQAVTKVTGLLPREIVGEAFHTRGFSGENLVKAKRALKTVFDSGK 482

Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449
                     L      +   + +      + ++  E      I  +  + +  ++++  
Sbjct: 483 PGL-------LELAASGQGRPVTLQVCLVPEFSRTGEVETVLAISRDISELKQTEQELRS 535

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
                  + E+   G   ++  G  L  N+A  +  GY  ED++ + F       + + +
Sbjct: 536 SREHYRLLYESVPLGYQSLDARGCYLEVNQAWLEAMGYSREDVIGQRFGR-FVTESAAYL 594

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS----LTMHDISEWK 565
                           E   +   K+          K               MHD++  +
Sbjct: 595 AESFAAFKQCGEISGAEFEMV--RKDGSRFIAAFYGKISTDEQGRFRQTHCIMHDVTARR 652

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + + ++  A+  AE  S  KS FLA +SHE+RTPL  I+G  E+          + +  +
Sbjct: 653 RAEEEIRRAQSAAEAASRAKSMFLAHMSHELRTPLNGILGMVEL----AHMACADEKQCK 708

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           Y     +SG+ +LDI+ND+LD++KIE+GK  L  EP SL E +   I  + +    K + 
Sbjct: 709 YLELAKQSGHTLLDIINDILDLAKIEAGKAELKNEPFSLREVMESTIEPLAMLGRRKGLE 768

Query: 686 IRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE--------- 735
           +       IP  +  D   ++Q+  N++ NA+ FT  G  + +    +            
Sbjct: 769 VTWRMDPRIPDRLAGDQGRLRQVLANLVGNALKFTERGS-VSVDLGLSRGGFETRPYCPA 827

Query: 736 --EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
              +I  + DTG+G+   +L    + F Q   S  ++  GTGLGL ++K +V+   G  +
Sbjct: 828 GMRLIFSIADTGIGIPQDKLPHLFESFTQALTSAHVKFGGTGLGLCISKRLVEMMQGTIW 887

Query: 794 IFSTPAKGTLIEII 807
             S   KG+     
Sbjct: 888 AESVVGKGSTFSFT 901



 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 41/285 (14%), Positives = 86/285 (30%), Gaps = 47/285 (16%)

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS-TNRAVSKLFGYP 488
           +  +  E    +   R++  E   L S++E+ SD I     +       N+A        
Sbjct: 8   RQELLAEAALLKERLRELGRERDFLASLVESASDEIWFCAPDESFARPLNKAARDFLDLA 67

Query: 489 VEDILRKPFTVFLEQNTPSVMNHY--------LTEILSLDLRQTLEKITLGSTKEEKLLS 540
              +                            L   L+ +     E + L  + E +   
Sbjct: 68  RAGLPPLQRAEADSPLPIFKTQAALLSPAESPLRRALAGETVHGDEAVLLPESGEVRHRE 127

Query: 541 LRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
            R    +      S       D+++ ++ +  L  + +  +            ++H    
Sbjct: 128 YRASPIRDEQGAVSGAVAIARDVTKTRKAEAALRESDESFQVA----------LTH---- 173

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
             T ++ F+  + +QRF  + NP +   A  I   G  + +++       K E       
Sbjct: 174 --TPVMVFAADM-DQRFSWVFNPPFGLTAEEII--GKTLQELI-------KPEDAS---- 217

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703
                +   VSE I      A  + ++IR         +  + R 
Sbjct: 218 ----EVQALVSELIE--SGRAIRQEVVIRFRGRETCWDVTIEPRR 256


>gi|171060844|ref|YP_001793193.1| PAS/PAC sensor signal transduction histidine kinase [Leptothrix
           cholodnii SP-6]
 gi|170778289|gb|ACB36428.1| PAS/PAC sensor signal transduction histidine kinase [Leptothrix
           cholodnii SP-6]
          Length = 490

 Score =  378 bits (972), Expect = e-102,   Method: Composition-based stats.
 Identities = 111/498 (22%), Positives = 202/498 (40%), Gaps = 16/498 (3%)

Query: 317 EGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
                   ++D  P   FV S  G +   N     +  + +   +     +  ++   + 
Sbjct: 2   RESATLDASIDDLPDACFVLSSTGIVLQWNAGAEEVFGHSAAQALGH-DLIELVVPDDQA 60

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
               A     L     TC A        +    + L +            +      +E 
Sbjct: 61  GPQRAWLATTLAGGPSTCEAVR------RRRDGSLLCVDVTSRMLPAPPGQPARILVVEK 114

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
           +    ++ +   ++   +   +LE+T DGI ++N  G I+  N    +LFGYP   +  +
Sbjct: 115 DVTLIKVQR-DAKLMEARFRELLESTPDGIVMVNPTGHIVIANSQAERLFGYPPGGLRGR 173

Query: 496 PFTVFLEQNTPSVMNHYLTE--ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553
                L +        + ++  +              G  ++     + I +  L     
Sbjct: 174 SVDQLLPERYRHAHVAHRSQYFLQPRKRAMGSGLDLAGLRRDGTEFPIEISLGPLRTEDG 233

Query: 554 YSLT--MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
             +   + DISE K+ +  L          +  K+ FLA +SHE+RTPL AIIGF+  + 
Sbjct: 234 AFVMSAIRDISERKRFERALQEKNVELAAANEAKTRFLANMSHELRTPLNAIIGFTGTLL 293

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
            +  GPL   +  +    +  SG  +L ++NDLLD++KIE+GK  +H E + +   + E 
Sbjct: 294 MRLPGPLTPDQERQ-LRTVQASGRHLLALINDLLDVAKIEAGKAQIHLEMLDVGALLHEV 352

Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
           +S +   A  K + +  S      +  +D R + QI +N++ NAI FT +G  I +    
Sbjct: 353 VSTLHPQAVAKGLALTLSVPEPALQCESDRRMLNQIVINLIGNAIKFTDAGS-IHVGLRA 411

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
            +     + V DTG+G+   +  K    F ++ +SQ    EGTGLGL L++ +     G 
Sbjct: 412 RAGGF-EIEVTDTGIGIGTDDQAKLFGAFSRVVSSQGRVAEGTGLGLHLSQKLAALLGGT 470

Query: 792 FYIFSTPAKGTLIEIIFP 809
             + S   +G+   +  P
Sbjct: 471 IDVRSEAGRGSCFSLRVP 488



 Score = 48.5 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/275 (8%), Positives = 73/275 (26%), Gaps = 12/275 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL----KRQNTWY 144
           ++  G++   + +  +  G     + G  +  +    +   +           +++    
Sbjct: 146 VNPTGHIVIANSQAERLFGYPPGGLRGRSVDQLLPERYRHAHVAHRSQYFLQPRKRAMGS 205

Query: 145 GKTTL-WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
           G        +GT    PI+++  P+ + +  F        +             +  + +
Sbjct: 206 GLDLAGLRRDGT--EFPIEISLGPLRTEDGAFV----MSAIRDISERKRFERALQEKNVE 259

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
            +  +E K    +    +              +  ++         +           L 
Sbjct: 260 LAAANEAKTRFLANMSHELRTPLNAIIGFTGTLLMRLPGPLTPDQERQLRTVQASGRHLL 319

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
           +  + L +           + +    G L +    +    +     +L+    E   L  
Sbjct: 320 ALINDLLDVAKIEAGKAQIHLEMLDVGALLHEVVSTLHPQAVAKGLALTLSVPE-PALQC 378

Query: 324 ETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVD 358
           E+  +      +   GN      +  +    ++  
Sbjct: 379 ESDRRMLNQIVINLIGNAIKFTDAGSIHVGLRARA 413


>gi|220909483|ref|YP_002484794.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219866094|gb|ACL46433.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 1331

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 118/793 (14%), Positives = 258/793 (32%), Gaps = 74/793 (9%)

Query: 85   FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQNTW 143
              WN D  G+   +S ++   +G    +++ +    V     +D  +      ++    +
Sbjct: 413  LVWNADEQGHNTYVSPQMSAYLGLPPEQLLNLDWETVIHPEDVDRVHRTWMKAVQTGTPY 472

Query: 144  YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
              +  L  ++G   +  +      ++         + FG+              +  + K
Sbjct: 473  EVEYRLRRVDGEYRWHLV----RAVF--EGNEQDRKWFGVSTDIHDRKRAEIALRESEAK 526

Query: 204  FSHLHE-------------------IKKGHSSVEKEKYDIFSQQSPPPHLR--------- 235
            +  L +                   +      V +        Q+    L          
Sbjct: 527  YRSLFDSIDEGFCLLEMIYDEADKAVDFRLLEVNQVFERQTGLQNTAGKLGSEVVPNTES 586

Query: 236  --------MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287
                    +      L     H+        Y        S      F  I   +  ++ 
Sbjct: 587  HWLRGYSNVAQTGEPLRVENYHEYTGRWYSAYGSRVGGVGSRRVAIVFDDITERKRAEEA 646

Query: 288  YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE--TVDKCPIPFFVYSHGNLFY-- 343
               + +  +       + R  P   A  +    +  E   +D+C I  +  +     +  
Sbjct: 647  LRESKEQQAFLLKFSDALRAEPDADAVANRAIRMLSEQLRLDRCYIGVYRLADDRADFTH 706

Query: 344  --ANPSFLLLTKYKSVDDIEIA--GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399
               N     L     + D   A        L    +++   +            + A   
Sbjct: 707  QVGNDRVPPLPDGVRLSDFPEALRVAFDRTLVIDDVAETEGLTDTDRRNLGALGLRALVA 766

Query: 400  LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV----DTRINKRKMEIEVMQLC 455
                +       AM  +           +       E      +    +  +     +  
Sbjct: 767  ATLRKGENNPLWAMVAVSACPRRWTRSEVALAEDVTERTWAAMERARAEEALRASESRYR 826

Query: 456  SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
             ++EA    +   + +G +   ++ +    G     ++   + + +       +      
Sbjct: 827  YLVEAVPHLVWTTDAKGRVTFVSQRLCDYIGLQASQLMNLEWRMVIYPEDVERVYQCWMH 886

Query: 516  ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKL 571
             +   L    E        +                      +     DI + ++ + + 
Sbjct: 887  SVHTGLP--FEAEYRIHRADGTYRWQLSRAMPFRNEQGEVVQWFGLTLDIHDKQELERQR 944

Query: 572  SHAK-------KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
                       + AE+ +  K +FL+ +SHE+R+PL  I+G++++++      L      
Sbjct: 945  DQVLQQAQVAQEEAERANRIKDEFLSILSHELRSPLNPILGWAQLLQ---IKTLDQTTTK 1001

Query: 625  EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
            +    I+ +  L   +V+DLLD+++I  GK++L   PV+L   ++ A+ +V+  A+ K +
Sbjct: 1002 QALATIEHNAKLQTQLVDDLLDVARILRGKLSLQEAPVNLVSVIAAALEVVKTAADVKSV 1061

Query: 685  LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744
             ++     +I ++  D   ++QI  N+LSNAI FTP+GG++ I      + +  + V DT
Sbjct: 1062 TLQPEL-TDIGQVRGDEARLQQIVWNLLSNAIKFTPTGGRVTIRLEQVED-QAQITVTDT 1119

Query: 745  GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTL 803
            G+G+    L    + F Q   S   +  G GLGL + K +V+A+ G     S    +G  
Sbjct: 1120 GIGIQPQFLPHIFESFRQQDTSISRQYGGLGLGLSIVKYLVEAHGGTITAESPGENQGAT 1179

Query: 804  IEIIFPLYDTSHP 816
              +  PL   + P
Sbjct: 1180 FTVQLPLLKAASP 1192



 Score =  145 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 52/513 (10%), Positives = 129/513 (25%), Gaps = 38/513 (7%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTW 143
             W+ +  G     ++   +  G    + IG    D       +       + +++    
Sbjct: 161 LLWDSEPDGSTNWYNQRWMEYTGQTFEQAIGWGWIDAIHPDDREGSARRYREAVEQGVPL 220

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +  +   +G   Y    + A P+   + +      +G               +  ++K
Sbjct: 221 QQEHRIRRHDG--AYRWFGVKASPLKDGSGKVVKM--YGAATDIHEQWVALEALRESEEK 276

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQ--SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
           F  L             +               +   ++     +     D  +      
Sbjct: 277 FRTLANTAPALIWYNDAQGKNCFINQYFLDFTGKSAEQIRGEGWHDLVHPDDAEHYIVDY 336

Query: 262 LTS--EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH----PSLSAYF 315
           L +  E+ S   +      +        Y   L + +     ++                
Sbjct: 337 LVAVHEQRSWHNRNRIRRHDGVWRWHDNYAQPLFSTNGIYLGHVGVTIDNTEAIEAGIAL 396

Query: 316 DEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
            E E      V+  P   +     G+  Y +P             +     L        
Sbjct: 397 QESEQRYRHLVELTPHLVWNADEQGHNTYVSPQMSAYLGLPPEQLLN----LDWETVIHP 452

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
              +   +  M      T      RL  +  + E    +            ++    G+ 
Sbjct: 453 EDVDRVHRTWMKAVQTGTPYEVEYRLRRV--DGEYRWHLV---RAVFEGNEQDRKWFGVS 507

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAII----NR-----EGIILSTNRAVSKLF 485
            +  D +  +  +     +  S+ ++  +G  ++    +      +  +L  N+   +  
Sbjct: 508 TDIHDRKRAEIALRESEAKYRSLFDSIDEGFCLLEMIYDEADKAVDFRLLEVNQVFERQT 567

Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
           G              +  NT S      + +        +E          +  S     
Sbjct: 568 GLQN---TAGKLGSEVVPNTESHWLRGYSNVAQTGEPLRVEN---YHEYTGRWYSAYGSR 621

Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578
                S   ++   DI+E K+ +  L  +K+  
Sbjct: 622 VGGVGSRRVAIVFDDITERKRAEEALRESKEQQ 654



 Score =  118 bits (297), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 38/411 (9%), Positives = 105/411 (25%), Gaps = 16/411 (3%)

Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ----SPPPHLRMKNKVS 241
            +       A  +  + +   +  +        +                     +    
Sbjct: 133 HDAERPKTEAALRESEARLQAVTNLVPDLLWDSEPDGSTNWYNQRWMEYTGQTFEQAIGW 192

Query: 242 SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301
              +     D      +Y     +   L ++      +            L++ S +  +
Sbjct: 193 GWIDAIHPDDREGSARRYREAVEQGVPLQQEHRIRRHDGAYRWFGVKASPLKDGSGKVVK 252

Query: 302 YLSHRNHP----SLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKS 356
                              E E       +  P   +     G   + N  FL  T  KS
Sbjct: 253 MYGAATDIHEQWVALEALRESEEKFRTLANTAPALIWYNDAQGKNCFINQYFLDFTG-KS 311

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
            + I   G     L  P  +++  +  ++     R+        + I+ +          
Sbjct: 312 AEQIRGEGWHD--LVHPDDAEHYIVDYLVAVHEQRSW----HNRNRIRRHDGVWRWHDNY 365

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476
                +     +   G+  ++ +       ++    +   ++E T   +   + +G    
Sbjct: 366 AQPLFSTNGIYLGHVGVTIDNTEAIEAGIALQESEQRYRHLVELTPHLVWNADEQGHNTY 425

Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
            +  +S   G P E +L   +   +       ++    + +       +E        E 
Sbjct: 426 VSPQMSAYLGLPPEQLLNLDWETVIHPEDVDRVHRTWMKAVQTGTPYEVEYRLRRVDGEY 485

Query: 537 KLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
           +   +R + +       +     DI + K+ +  L  ++           +
Sbjct: 486 RWHLVRAVFEGNEQDRKWFGVSTDIHDRKRAEIALRESEAKYRSLFDSIDE 536



 Score =  108 bits (269), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 65/584 (11%), Positives = 154/584 (26%), Gaps = 79/584 (13%)

Query: 69  DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID 128
           +SE  F            W  DA G    I++      G  A ++ G    D+      +
Sbjct: 272 ESEEKFRTLANTAPA-LIWYNDAQGKNCFINQYFLDFTGKSAEQIRGEGWHDLVHPDDAE 330

Query: 129 PN-NHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187
                    +  Q +W+ +  +   +G  ++   D  A P++S N  + G  G  I   N
Sbjct: 331 HYIVDYLVAVHEQRSWHNRNRIRRHDG--VWRWHDNYAQPLFSTNGIYLGHVGVTI--DN 386

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKY--DIFSQQSPPPHLRMKNKVSSLTE 245
               +     +  ++++ HL E+         E+      S Q          ++ +L  
Sbjct: 387 TEAIEAGIALQESEQRYRHLVELTPHLVWNADEQGHNTYVSPQMSAYLGLPPEQLLNLDW 446

Query: 246 Y---YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYT--KKQYFGTLQNNSKESF 300
               +    D +       + +  +    +     ++        +  F   + + K   
Sbjct: 447 ETVIHPEDVDRVHRTWMKAVQTG-TPYEVEYRLRRVDGEYRWHLVRAVFEGNEQDRKWFG 505

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF----FVYS------HGNLFYANPSFLL 350
                 +         E E       D     F     +Y          L   N  F  
Sbjct: 506 VSTDIHDRKRAEIALRESEAKYRSLFDSIDEGFCLLEMIYDEADKAVDFRLLEVNQVFER 565

Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
            T       ++   G       P    +       + ++       +   +T +W     
Sbjct: 566 QTG------LQNTAGKLGSEVVPNTESHWLRGYSNVAQTGEPLRVENYHEYTGRW----- 614

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL---EAT-----S 462
               +  +        +     +  +  + +  +  +     Q   +L   +A      +
Sbjct: 615 ----YSAYGSRVGGVGSRRVAIVFDDITERKRAEEALRESKEQQAFLLKFSDALRAEPDA 670

Query: 463 DGIA-----IINREGIILST-------------------NRA------VSKLFGYPV--E 490
           D +A     +++ +  +                      N          +L  +P    
Sbjct: 671 DAVANRAIRMLSEQLRLDRCYIGVYRLADDRADFTHQVGNDRVPPLPDGVRLSDFPEALR 730

Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
               +   +     T  + +     + +L LR  +               + +      +
Sbjct: 731 VAFDRTLVIDDVAETEGLTDTDRRNLGALGLRALVAATLRKGENNPLWAMVAVSACPRRW 790

Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
           +        D++E      + + A++      S     +  V H
Sbjct: 791 TRSEVALAEDVTERTWAAMERARAEEALRASESRYRYLVEAVPH 834



 Score = 65.4 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/249 (9%), Positives = 63/249 (25%), Gaps = 24/249 (9%)

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD--RTCIAASARLHTIQWNRENSLAMTFI 416
            +  +  +  +L   +  D   +  +   ++     C              + +L    +
Sbjct: 46  ALCRSARVDAILLESRFPDPQGLDVLDQLKAQLGEQCPPIIVIDQNDANLAKRALKAGAV 105

Query: 417 PFEKANQFPENMPQNGIEPED--------VDTRINKRKMEIEVMQLCSILEATSDGIAII 468
            +   +Q    +    +             +    +  +     +L ++     D +   
Sbjct: 106 DYLIRSQITSEILYQAVSMVISTDGKSHDAERPKTEAALRESEARLQAVTNLVPDLLWDS 165

Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528
             +G     N+   +  G   E  +   +   +  +          E +   +   L++ 
Sbjct: 166 EPDGSTNWYNQRWMEYTGQTFEQAIGWGWIDAIHPDDREGSARRYREAVEQGVP--LQQE 223

Query: 529 TLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSH 584
                 +       +    L   S   +       DI E              A +ES  
Sbjct: 224 HRIRRHDGAYRWFGVKASPLKDGSGKVVKMYGAATDIHEQ--------WVALEALRESEE 275

Query: 585 KSDFLARVS 593
           K   LA  +
Sbjct: 276 KFRTLANTA 284


>gi|189426568|ref|YP_001953745.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189422827|gb|ACD97225.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 1287

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 107/582 (18%), Positives = 217/582 (37%), Gaps = 32/582 (5%)

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS--LSA 313
                L  + +    +++       N   +           +   E L   N+    L  
Sbjct: 336 RANRRLTHTLQELELQRKTTDWALDNLNEQTVQLEQTNEELQTINEQLLTTNNERGLLLE 395

Query: 314 YFDEGENLTPETVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                E+     +D      +  +   +  + N + L +  Y     +        +  +
Sbjct: 396 ALRSSEDQLRAILDSTAEAIYGTNLQGICTFCNAACLRMLGYDDPAQLIGKNMHHQIHHS 455

Query: 373 PKLSDNNAIKPVMLYR--SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
            +       +   + +   +   I     +        +   + +  + +  Q    +  
Sbjct: 456 HRDGSAFPEEECRISQSFKEGQGIHVDDEVFW--RRDGSCFPVEYWSYPQY-QDGRIVGT 512

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490
                +  +   +   + +    L   +E +   + I +  G I   N    ++ G+  E
Sbjct: 513 VATFMDITERIKSHSSLLM----LSRAVENSPAIVVITDHAGSIEYVNSKFVEITGFAAE 568

Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
           D L     +             + + ++               K  ++      I  +  
Sbjct: 569 DALGHNPRILNAGVQSKEFYRQMWDTINAGQEWRG--EFCNRKKNGEMHWEHASISPIRD 626

Query: 551 SSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
                  +     DI+E ++  ++L  AK+ AE  +  KS+FLA +SHEIRTPL AIIGF
Sbjct: 627 DHGRITHFVAVKEDITESRRIADELRRAKEEAEAGNRSKSEFLANMSHEIRTPLNAIIGF 686

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
           + +    +       +  +Y + ++ +   +L I+N++LD SKIE+GK+       +  E
Sbjct: 687 NTLALETQLTA----QQHDYLSRVNFAATSLLRIINEILDFSKIEAGKLEFEHAVFNPRE 742

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQI 725
            +   I+L Q  A  K + +    ++N+P  ++ D   + Q+ +N++ NA+ FT  G  +
Sbjct: 743 VLQNIINLFQQQAAHKGLSLELHCSDNLPAELVGDSVRLGQVLVNLVGNAVKFTEQGA-V 801

Query: 726 IISTTHTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
            +  + T        +   VRDTG+G+   +L K  +PF Q   S   +  GTGLGL ++
Sbjct: 802 SLYASPTEYGCENVTLEFSVRDTGIGLAPDKLTKLFQPFTQADGSITRKFGGTGLGLSIS 861

Query: 782 KAMVDANMGKFYIFSTPAKGTLIE----IIFPLYDTSHPHDC 819
           K +V+   G  +  S P  G++        FP   ++    C
Sbjct: 862 KRIVELTGGHIWAESEPGYGSVFSFNMPFSFPAAGSAAARQC 903



 Score = 57.3 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 64/239 (26%), Gaps = 10/239 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147
            D  G ++ ++ +  +  G  A   +G     ++  +        + D +     W G+ 
Sbjct: 546 TDHAGSIEYVNSKFVEITGFAAEDALGHNPRILNAGVQSKEFYRQMWDTINAGQEWRGEF 605

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                 G         +  PI   +   + F    +              +R  ++    
Sbjct: 606 CNRKKNGE--MHWEHASISPIRDDHGRITHF--VAVKEDITESRRIADELRRAKEEAEAG 661

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
           +  K    +           ++P   +   N ++  T+  A + D L    +   +    
Sbjct: 662 NRSKSEFLANMSH-----EIRTPLNAIIGFNTLALETQLTAQQHDYLSRVNFAATSLLRI 716

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
                +           +   F   +        +     H  LS      +NL  E V
Sbjct: 717 INEILDFSKIEAGKLEFEHAVFNPREVLQNIINLFQQQAAHKGLSLELHCSDNLPAELV 775


>gi|297537877|ref|YP_003673646.1| multi-sensor hybrid histidine kinase [Methylotenera sp. 301]
 gi|297257224|gb|ADI29069.1| multi-sensor hybrid histidine kinase [Methylotenera sp. 301]
          Length = 1239

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 123/614 (20%), Positives = 229/614 (37%), Gaps = 24/614 (3%)

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
             ++     S       +F  QS     +    +     +  H   +    +        
Sbjct: 285 TIDMNGRILSFNHAAEQLFGWQSAEIVGQDTAILMPKAYHVRHNHFLKHFGEAGQAKILG 344

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
                       +            +   +             ++     E +      +
Sbjct: 345 VGREVTGVRKNGSTVPIRLAIGKAKISGETLIFGFITDLTQRNAMKKTMRERDEQLRSLM 404

Query: 327 DKCPIPFFV--YSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
              P   F   Y+    +   + S   LT Y + + +    GLS  L          I  
Sbjct: 405 SNIPGVTFRCQYNQDWRMLVISDSVKDLTGYAAEEFL--KNGLSCTLFTHTEDAARVIAE 462

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
           +    ++    A   R   I+    +   ++ +     ++       +G+  +  ++++ 
Sbjct: 463 IQTALANGEHYAIEYR---IKHRDGSEKWVSEMGCAIRDKSGAVQMLDGVILDVTESKLR 519

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
             + E       +I ++TS  +A  +  G IL  N     L GY   +++ K  +     
Sbjct: 520 HAEYESIA---RAINQSTS--VAEFSMNGTILDANATFLTLLGYEKNEVIGKHHS-IFCS 573

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMH 559
              +    Y  +  +L+  + ++       K    + +      L  +        + M 
Sbjct: 574 AQDAASASYRNKWEALNRGEFVQGEFKRLGKNGSEVWIHASYSPLLNADGKPSKVLMFMI 633

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           DI+E  + +N L  AK  AE+ +S K+ FLA +SHEIRTP+ AIIGFSE++ +       
Sbjct: 634 DITERTRMENDLKLAKDKAEQAASAKATFLANMSHEIRTPMNAIIGFSEIMMDTEM---- 689

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
                 Y N I+ S   +L ++ND+LD +K+E GK+ L     SL E V   +S + + A
Sbjct: 690 QDEQRRYMNTINNSAKSLLHLLNDILDSAKLEKGKLELEIVDFSLYELVDSIVSTLWVQA 749

Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738
             K + ++     N           ++QI +N+L N+I FT  G  + +      N E+ 
Sbjct: 750 KRKNLDLQLELDPNTASYYLGAPDRIRQILMNLLGNSIKFTEHG-YVKLVVKQLDNHELS 808

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
             + DTG+G+    L+   +PF Q  +S   +  GTGLG  ++K +V+   G+    S  
Sbjct: 809 FSIIDTGIGIPQDRLDVIFEPFTQADSSMSRKFGGTGLGTTISKQLVELMGGRLTAKSEI 868

Query: 799 AKGTLIEIIFPLYD 812
             G+   +I PL  
Sbjct: 869 GSGSCFTMILPLQP 882



 Score = 97.8 bits (242), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 62/156 (39%), Gaps = 11/156 (7%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           R   R ++    +L +IL+   DGI  I+  G ILS N A  +LFG+   +I+ +   + 
Sbjct: 259 RQMLRSLQNNQSRLSTILDTAVDGIITIDMNGRILSFNHAAEQLFGWQSAEIVGQDTAIL 318

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTL--EKITLGSTKEEKLLSLRIIIK--KLPFSSCYSL 556
           + +      NH+L         + L   +   G  K    + +R+ I   K+   +    
Sbjct: 319 MPKAYHVRHNHFLKHFGEAGQAKILGVGREVTGVRKNGSTVPIRLAIGKAKISGETLIFG 378

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
            + D+++        +  KK   +        ++ +
Sbjct: 379 FITDLTQR-------NAMKKTMRERDEQLRSLMSNI 407



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 31/378 (8%), Positives = 99/378 (26%), Gaps = 25/378 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL-KRQNT----W 143
           ID +G +   +    +  G  + +++G     +    +   +NH      +         
Sbjct: 286 IDMNGRILSFNHAAEQLFGWQSAEIVGQDTAILMPKAYHVRHNHFLKHFGEAGQAKILGV 345

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             + T     G+ + + + +    I            FG +      N  +   +  D++
Sbjct: 346 GREVTGVRKNGSTVPIRLAIGKAKISGET------LIFGFITDLTQRNAMKKTMRERDEQ 399

Query: 204 FSHL----HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV----SSLTEYYAHKDDVLK 255
              L      +       +  +  + S            +      S T +   +D    
Sbjct: 400 LRSLMSNIPGVTFRCQYNQDWRMLVISDSVKDLTGYAAEEFLKNGLSCTLFTHTEDAARV 459

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
             +     +       +      + ++    +    +++ S             + S   
Sbjct: 460 IAEIQTALANGEHYAIEYRIKHRDGSEKWVSEMGCAIRDKSGAVQMLDGVILDVTESKLR 519

Query: 316 DEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
                     +++         +G +  AN +FL L  Y+  + I     +     + + 
Sbjct: 520 HAEYESIARAINQSTSVAEFSMNGTILDANATFLTLLGYEKNEVIGKHHSI---FCSAQD 576

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
           + + + +      +             +  N    + +        N   +         
Sbjct: 577 AASASYRNKWEALNRGEF--VQGEFKRLGKNGSE-VWIHASYSPLLNADGKPSKVLMFMI 633

Query: 436 EDVDTRINKRKMEIEVMQ 453
           +  +    +  +++   +
Sbjct: 634 DITERTRMENDLKLAKDK 651


>gi|86751073|ref|YP_487569.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris
           HaA2]
 gi|86574101|gb|ABD08658.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris
           HaA2]
          Length = 1158

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 118/696 (16%), Positives = 249/696 (35%), Gaps = 60/696 (8%)

Query: 160 PIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEK 219
           PI+L  LPI   +R F       +              + L        +I    + ++ 
Sbjct: 208 PIEL--LPISGMDRGF--LVLLPVYRSGDPVTTEEQRRRALVGWTFTPVDIYAILAELDS 263

Query: 220 EKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTIN 279
              + F            + V +  +          +      T + +         +++
Sbjct: 264 GAGE-FGFSVSDDGGAPFHTVGAPRDSSLSLPTRDISFGMYGRTWKIAFWALPPFIESLS 322

Query: 280 LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-H 338
           L                  +   L         A      +     V+         S  
Sbjct: 323 LPNPWLPFAMTLAIGLLVTALVNLQMFYQAR-RAEQTIERSRLAAIVEGSNDAILAKSVD 381

Query: 339 GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398
           G +   N +   L  Y S + +     +  L+      +        +   D        
Sbjct: 382 GIVIDWNKAAERLFGYSSHEAVGSK--VYDLIVPEDRREEELRMLERMRHGDPMTY---F 436

Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC--- 455
           R   I+ +  + + +        ++    +       +  +    ++++      L    
Sbjct: 437 RTRRIRRDG-SLVDVAISLSPIRSEVGALIGIASAARDITELVAAEKQIRELNASLERQV 495

Query: 456 ---------------SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
                          +ILE  +  +   N +G I   N A  ++ GY  E+++ +   + 
Sbjct: 496 ADRTAMLEKSMTLQTAILERAAYAVIATNVDGTITLFNPAAERMLGYKAEELIGRATAML 555

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITL---------------GSTKEEKLLSLRIII 545
                P  +      +    +     +  +                  K    + +R+ +
Sbjct: 556 FH--DPQELLDRADAMRRQGIEVGSGQRVVQALLAHNDPDTSLWTYVGKTGNRIPVRLTL 613

Query: 546 KKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
            +L               D++E  + +++L  A+  AE+  + K+DFLA +SHEIRTPL 
Sbjct: 614 CRLRTKDGTDLGVLGIAVDLTEQLKYEDELKAARASAEQAGAAKADFLANMSHEIRTPLN 673

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
            IIG++++    +      P        I  + + +  I++D+LD SKIE+  + L  +P
Sbjct: 674 GIIGYADLALEDQ---TLVPTTRRQVERIFEASDSLRVIIDDILDFSKIEACGLKLESKP 730

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           + L E +   +S++Q  A EK + +  +  +    ++ D   ++Q+ LN+++NA+ FT +
Sbjct: 731 LYLTELIDNCVSIIQPKAEEKGLKLLATARDTPAVLMGDAARLRQVLLNLMNNAVKFTSA 790

Query: 722 GG-QIIISTTHTSNEEVILRVR--DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
           G  ++I+S    ++  V LR+   DTG+G++  + +   K F Q   +   +  GTGLGL
Sbjct: 791 GSVELIVSCVSRADPMVRLRIAVVDTGIGISKVDQQGLFKRFSQADETISRKYGGTGLGL 850

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTL--IEIIFPLYD 812
            +++ +V A   +  I S   +G+    E+  P+ +
Sbjct: 851 AISQRIVQAMQSELKIDSDQGRGSTFYFEVELPIAE 886



 Score =  100 bits (249), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 54/469 (11%), Positives = 122/469 (26%), Gaps = 44/469 (9%)

Query: 129 PNNHIGDLLKRQNTWYGKTT----LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIV 184
            ++ I  L +R  T+  +      +  + G  +            +   EF G RGFG V
Sbjct: 70  ASDFIYRLKERVGTYRFELLAARGVIAVAGEAISFDTFHRYAETRNFISEFPGARGFGFV 129

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244
                            +         K  +  E  +Y +   +    +        +  
Sbjct: 130 RPV--APQDVEAFVARMRANGLPTYGVKQLAPHEGVRYLVTYLEPHDLNGTALGIDLASE 187

Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
                  D         +T+    LP         +      +    +    +     + 
Sbjct: 188 AKRKTAADAAAASGQATMTAPIELLPISGMDRGFLV-LLPVYRSGDPVTTEEQRRRALVG 246

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364
               P          +            F V   G   +        +           G
Sbjct: 247 WTFTPVDIYAILAELDSGAGEF-----GFSVSDDGGAPFHTVGAPRDSSLSLPTRDISFG 301

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
                      +    I+ + L                  W          +PF      
Sbjct: 302 MYGRTWKIAFWALPPFIESLSL---------------PNPW----------LPFAMTLAI 336

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
              +            R  ++ +E    +L +I+E ++D I   + +GI++  N+A  +L
Sbjct: 337 GLLVTALVNLQMFYQARRAEQTIERS--RLAAIVEGSNDAILAKSVDGIVIDWNKAAERL 394

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
           FGY   + +       +           + E +      T  +      ++  L+ + I 
Sbjct: 395 FGYSSHEAVGSKVYDLIVPEDRREEELRMLERMRHGDPMTYFRTRRIR-RDGSLVDVAIS 453

Query: 545 IKKLPFSSCYSLTM----HDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
           +  +       + +     DI+E    + ++       E++ + ++  L
Sbjct: 454 LSPIRSEVGALIGIASAARDITELVAAEKQIRELNASLERQVADRTAML 502



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/162 (12%), Positives = 41/162 (25%), Gaps = 20/162 (12%)

Query: 80  PRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR 139
            R        +  G +   +    + +G  A ++IG     +             D ++R
Sbjct: 514 ERAAYAVIATNVDGTITLFNPAAERMLGYKAEELIGRATAMLFH--DPQELLDRADAMRR 571

Query: 140 QNTWYG---------------KTTLWPIEG-TNLYVPIDLAALPIYSRNREFSGFRGFGI 183
           Q    G                T+LW   G T   +P+ L    + +++    G  G  +
Sbjct: 572 QGIEVGSGQRVVQALLAHNDPDTSLWTYVGKTGNRIPVRLTLCRLRTKDGTDLGVLGIAV 631

Query: 184 VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF 225
                         K            K    +    +    
Sbjct: 632 --DLTEQLKYEDELKAARASAEQAGAAKADFLANMSHEIRTP 671


>gi|186473345|ref|YP_001860687.1| multi-sensor hybrid histidine kinase [Burkholderia phymatum STM815]
 gi|184195677|gb|ACC73641.1| multi-sensor hybrid histidine kinase [Burkholderia phymatum STM815]
          Length = 989

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 112/720 (15%), Positives = 257/720 (35%), Gaps = 40/720 (5%)

Query: 104 KTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDL 163
           +  G    + I  +  D+  ++ +        + +          L P + T L   +++
Sbjct: 65  ELDGIDTARRI-RQARDI-PVVFLTAYADEETIRRATAAEPYGYVLKPFDDTQLRTVVEM 122

Query: 164 AALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYD 223
           A     +                 R      A+            +     + V      
Sbjct: 123 ALYKHGAE-------------RRLRESEQRYAITLSSIGDGVLSTDADGFVTFVNPAGEA 169

Query: 224 IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY 283
           +          R   +V  L + +  +  +       + ++ +  LP +      + +  
Sbjct: 170 LTGWSRSEATGRRLREVFRLHDEH-TRVLIDDPTAAVMQSASDGGLPARAILRVRDGSDL 228

Query: 284 TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE------NLTPETVDKCPIPFFVYS 337
             +     + +        +      +      E E            +    +  +   
Sbjct: 229 PVECTGTPMTDERGARQGIVIVFRDVTQKRRAQEAEILRETNARLEMAMYGSNVGVWEID 288

Query: 338 --HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL--DAPKLSDNNAIKPVMLYRSDRTC 393
              G+       +  + ++   D           +    P   D+          S    
Sbjct: 289 MPEGDYKRGFARYSNIYEWLGFDTPHARLDYEAYMSVLHPDHRDSTDRAVASFLESGDGV 348

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
                RL   +        +      + +   + +   G   +    ++ ++ +     +
Sbjct: 349 FELENRL---RHRDGTDRWVLVRGTARRDATGKPVRFVGSLVDITQLKVTEQALRASEER 405

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
                E  + G+A  + +G  L  N    ++ G+P   + ++     +  +  +      
Sbjct: 406 FRGTFENAAVGVAHCDLDGCFLRVNHRSGEIVGWPRGALQQRRLHELIHHDFIAASIDRF 465

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKN 569
             +L+    +   +       +   + + + +     +S       + + DIS  K  ++
Sbjct: 466 -RLLTEGKLEHYSEEVPLVRVDGSRVWVTLSVALQHDASGQTSHVIVIIQDISARKALED 524

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
            +  AK+ AE  +  K  FLA +SHE+RTPL  I+G++++++        + R +     
Sbjct: 525 TVRVAKEAAEAANRAKDQFLANISHELRTPLNGILGYAQMLQRDAR---LDARQLASVGV 581

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I++SG  +L ++ND+LD +++ +GK+ L    VSL   +     +V + A +KR+++   
Sbjct: 582 IEQSGQHLLTLINDILDFARLGAGKLELQVGEVSLRGFLETIAEIVAVRAQQKRLVLNYV 641

Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748
            A ++P  +  D R ++Q+ LN+L+NA+ FT  G ++ +S +  +   V   VRDTG+G+
Sbjct: 642 AAPDLPAVVRVDERRLRQVLLNLLANAVKFTDRG-EVTLSVSRGAAGRVRFEVRDTGIGV 700

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           +   LE   +PF Q       R  G GLGL +++ +V    G+  + S+  +G++     
Sbjct: 701 SADRLEAIFQPFEQA-GDHTRRSGGAGLGLAISRQLVRMMGGEIEVTSSAGEGSVFGFEL 759



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 36/391 (9%), Positives = 94/391 (24%), Gaps = 34/391 (8%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV-------SDILHIDPNNHIGDLLK 138
             + DA G++  ++       G    +  G RL +V       + +L  DP   +     
Sbjct: 151 VLSTDADGFVTFVNPAGEALTGWSRSEATGRRLREVFRLHDEHTRVLIDDPTAAVMQSAS 210

Query: 139 RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSG-FRGFGIVHVNRVDNDPRALG 197
                         +G++  +P++    P+        G    F  V   R   +   L 
Sbjct: 211 DGGLPARAILRVR-DGSD--LPVECTGTPMTDERGARQGIVIVFRDVTQKRRAQEAEILR 267

Query: 198 KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP-----------PPHLRMKNKVSSLTEY 246
           +   +    ++    G   ++  + D     +             PH R+  +      +
Sbjct: 268 ETNARLEMAMYGSNVGVWEIDMPEGDYKRGFARYSNIYEWLGFDTPHARLDYEAYMSVLH 327

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
             H+D          L S +     +      +             ++ + +   ++   
Sbjct: 328 PDHRDST-DRAVASFLESGDGVFELENRLRHRDGTDRWVLVRGTARRDATGKPVRFVGSL 386

Query: 307 NHPSL----SAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIE 361
              +            E     T +   +              N     +  +       
Sbjct: 387 VDITQLKVTEQALRASEERFRGTFENAAVGVAHCDLDGCFLRVNHRSGEIVGWPRGAL-- 444

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                   L      D  A             +   +    +     + + +T     + 
Sbjct: 445 ----QQRRLHELIHHDFIAASIDRFRLLTEGKLEHYSEEVPLVRVDGSRVWVTLSVALQH 500

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
           +   +      I  +    +  +  + +   
Sbjct: 501 DASGQTSHVIVIIQDISARKALEDTVRVAKE 531



 Score = 64.3 bits (155), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 34/373 (9%), Positives = 92/373 (24%), Gaps = 18/373 (4%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ--NTWYGKT 147
           D  G    ++    + +G     +   RL ++     I  +     LL       +  + 
Sbjct: 421 DLDGCFLRVNHRSGEIVGWPRGALQQRRLHELIHHDFIAASIDRFRLLTEGKLEHYSEEV 480

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
            L  ++G+   V + L+    +  + + S      I+             +   +     
Sbjct: 481 PLVRVDGS--RVWVTLSVALQHDASGQTSHV--IVIIQDISARKALEDTVRVAKEAAEAA 536

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT---- 263
           +  K    +    +           + +M  + + L         V++     LLT    
Sbjct: 537 NRAKDQFLANISHELRT-PLNGILGYAQMLQRDARLDARQLASVGVIEQSGQHLLTLIND 595

Query: 264 --SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE-YLSHRNHPSLSAYFDEGEN 320
                     + +     ++     +    +     +     L++   P L A     E 
Sbjct: 596 ILDFARLGAGKLELQVGEVSLRGFLETIAEIVAVRAQQKRLVLNYVAAPDLPAVVRVDER 655

Query: 321 LTPE-TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
              +  ++           G +  +             +  +   G+S            
Sbjct: 656 RLRQVLLNLLANAVKFTDRGEVTLSVSRGAA--GRVRFEVRDTGIGVSADRLEAIFQPFE 713

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
                   RS    +  +     ++         +         F  + P +     +  
Sbjct: 714 QAGDHT-RRSGGAGLGLAISRQLVRMMGGEIEVTSSAGEGSVFGFELDAPASTAGLGECA 772

Query: 440 TRINKRKMEIEVM 452
            R+    ++    
Sbjct: 773 PRLQAGSLDGARR 785


>gi|146308663|ref|YP_001189128.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp]
 gi|145576864|gb|ABP86396.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp]
          Length = 1237

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 129/659 (19%), Positives = 247/659 (37%), Gaps = 53/659 (8%)

Query: 183 IVHVNRVDNDPRALGKRLDKK----FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKN 238
           +       N P      L       F     ++    S  +    +    S      ++ 
Sbjct: 210 VFRPRMPLNTPEQRRAALLGMVHGAFRSHDLMEGILGSQTRHFDIVLRDVSAQGGELLRG 269

Query: 239 KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE 298
           +  +          +             +  PE E         ++           +  
Sbjct: 270 EAPANGWVPRFSSQLQLPLYGRNWELALTGTPEYERSLIDRSGTFSLWSGLAVALLLALL 329

Query: 299 SFEYLSHRNH-----PSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLT 352
              YL  R          +    E E      V++ P+      + G +  AN S   L 
Sbjct: 330 VGGYLYQRERKLHMSEQAARDLQEREERFRLLVERLPVATVLCDAKGRIEMANRSAAELF 389

Query: 353 KYKSVDDIEI--AGGLSTLLDAPKLSDN-NAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
                  +       L  +     L +        M+       I  S  L+ +      
Sbjct: 390 DCPLNGLLGETVLRVLPNIESPQDLQEQLGESDERMVRTLRGESIPVSISLNPLH----- 444

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469
                           E         +    ++ +        +   ++EA+ + I +++
Sbjct: 445 ----------------EGSSYLINLVDLRARKVAE-------ERFRLVVEASPNAIVLVD 481

Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT--EILSLDLRQTLEK 527
             G I   NR   ++FGY  + +L +P  + L               + +    R    +
Sbjct: 482 GLGRIAMVNRQTEQMFGYERQMLLGEPIEMLLPAALRGGHVALRRGYQAMPEQRRMGGNR 541

Query: 528 ITLGSTKEEKLLSLRI--IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
              G  +E +L+ L +     +    S     + DISE +  + KL    +     + +K
Sbjct: 542 ELFGQHREGRLIPLEVGLSPIRSGNESLVQAVIIDISERRAAEQKLREQAEQLLLANRYK 601

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
           S+FLA +SHE+RTPL +I+  S+ ++    G L   +  ++A+ + R+G+ +L ++ND+L
Sbjct: 602 SEFLANMSHELRTPLNSILILSDQLRQNLAGNLT-EKQTKHADIVHRAGSDLLQLINDVL 660

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSV 704
           D++K+ESG+M L  EP+++ + + E  + ++  A  K + + T     +PR+  +D   +
Sbjct: 661 DLAKVESGRMQLKLEPINMQDVLVELDASLRPMAELKGLSLHTQIDAGVPRVIHSDRVRL 720

Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEE-----VILRVRDTGVGMTNYELEKAMKP 759
            QI  N+LSNA+ FT  G ++ ++ +    +E     +   VRDTG+G+   + E+  + 
Sbjct: 721 HQILRNLLSNALKFTDQG-EVTLTVSSEGRQEDERELLCFSVRDTGIGIDPAQHEQVFQA 779

Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
           F QI  S   R  GTGLGL + + +V A  G   + STP +G+   +  P+       +
Sbjct: 780 FQQIDGSTSRRFGGTGLGLAITRQLVLALDGDIGLQSTPGQGSTFTVRLPVQSAPATAE 838



 Score = 39.2 bits (90), Expect = 3.1,   Method: Composition-based stats.
 Identities = 22/261 (8%), Positives = 67/261 (25%), Gaps = 16/261 (6%)

Query: 69  DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID 128
           + E  F        V      DA G ++  +    +        ++G  +  V    +I+
Sbjct: 353 EREERFRLLVERLPVATVL-CDAKGRIEMANRSAAELFDCPLNGLLGETVLRVLP--NIE 409

Query: 129 PNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNR 188
               + + L        +  +  + G +  +P+ ++  P++  +               R
Sbjct: 410 SPQDLQEQLG----ESDERMVRTLRGES--IPVSISLNPLHEGSSYLINLV------DLR 457

Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA 248
                    + + +   +   +  G   +                + +   +  L     
Sbjct: 458 ARKVAEERFRLVVEASPNAIVLVDGLGRIAMVNRQTEQMFGYERQMLLGEPIEMLLPAAL 517

Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDF-HTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
               V     Y  +  +      +E F           +     +++ ++   + +    
Sbjct: 518 RGGHVALRRGYQAMPEQRRMGGNRELFGQHREGRLIPLEVGLSPIRSGNESLVQAVIIDI 577

Query: 308 HPSLSAYFDEGENLTPETVDK 328
               +A     E      +  
Sbjct: 578 SERRAAEQKLREQAEQLLLAN 598


>gi|256424548|ref|YP_003125201.1| multi-sensor hybrid histidine kinase [Chitinophaga pinensis DSM
           2588]
 gi|256039456|gb|ACU63000.1| multi-sensor hybrid histidine kinase [Chitinophaga pinensis DSM
           2588]
          Length = 1203

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 139/752 (18%), Positives = 254/752 (33%), Gaps = 53/752 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            D  G L + ++     +G     +  M   D+               +    +    T 
Sbjct: 185 TDFSGRLWQFNKAFTTVLGWPEADLQTMSALDLVHPDDTASTGKELAKMGEGASTISFTH 244

Query: 149 LWPIEGTNLYV--PIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                  +  +   +   A P             F +      +          +     
Sbjct: 245 RVRTAEGDYRLIQWV---ATP-EPHTGNI-----FAMGRDITSETLKEQALIESETNART 295

Query: 207 LHEIKKGHSSVEKEKYDIFSQQ--SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
             E   G          I      S         ++  +  Y              L+  
Sbjct: 296 FFENSLGMMCRHDLDGHITYVNKASADSVGYSIEELLQMNLYQLIPQQYHADLDQYLINI 355

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
                                  +   L N+ K S   + +    +     +     T E
Sbjct: 356 RIKGKITGLMHTQHKKGHIRIWLFNNVLINDGKGSAYVIGNAADITERHELETDLKRTKE 415

Query: 325 TVDKCP----IPFFVYSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
            +++      I  +    G    + +     + +     ++     +S        +   
Sbjct: 416 LLERTNQVARIGGWEVDLGTQQLHWSTVTCEIHEVPEDFNLTPDNAMSFYT---GDNRIL 472

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
               V    ++ +       L    W        +    E  +   + +   G   +  +
Sbjct: 473 LDAVVEQAITNGS--PWQIELQITTWRGRKLWVRSIGHAEFEDGVCKRLY--GTFQDIDE 528

Query: 440 TRINKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
            +     ++     L  +LE+ S+  I   + EGII   N+   +L GY   ++  K   
Sbjct: 529 KKKADLAIQQSRQLLEDVLESASEVSIIATDHEGIITLFNKGAERLLGYKAGEVTGKESW 588

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLE-------------KITLGSTKEEKLLSLRIII 545
             L      +        LS    +  E             +      K+   + + +++
Sbjct: 589 TILHAEEEIMNRSIELSALSGQHIEGFEVFTYVPELEGSERREWTYIRKDGSQIIISMVV 648

Query: 546 KKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
             +  ++    Y     DI+E K+ +  L  AK  AE  S  KS+FLA +SHEIRTPL  
Sbjct: 649 TPIRDNAVITGYLGIAVDITERKKAERDLKEAKIQAEYASKAKSEFLANMSHEIRTPLNG 708

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           +IGF++++         N    +Y   +++S N +L I+ND+LD SKIE+GK+ L     
Sbjct: 709 VIGFTDLVLKTAL----NETQQQYVAIVNQSANSLLSIINDILDFSKIEAGKIELDISKC 764

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPS 721
            + E  S+A  ++   A +K + +  + +  +PR + AD+  +KQI LN+LSNA+ FT  
Sbjct: 765 DIYEFSSQASDILSFQAQQKGLEMLLNVSPELPRFMWADIVRLKQILLNLLSNAVKFTEK 824

Query: 722 GGQIIISTTHTSNEEV-----ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
           G +I +     +   V        VRDTG+G+   + EK  + F Q   S   R  GTGL
Sbjct: 825 G-EIELEIKPIAYPSVGMTTIRFEVRDTGIGIRKNKQEKIFEAFLQEDISTTKRYGGTGL 883

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           GL ++  ++     K  + ST  KG+      
Sbjct: 884 GLSISNKLLALMGSKLQLESTTGKGSTFFFDL 915



 Score = 65.0 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/383 (7%), Positives = 92/383 (24%), Gaps = 26/383 (6%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
             D  G++  +++    ++G    +++ M L  +    +    +     ++ +    G  
Sbjct: 306 RHDLDGHITYVNKASADSVGYSIEELLQMNLYQLIPQQYHADLDQYLINIRIKGKITGLM 365

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                +G    + +    L I             G        ++     KR  +     
Sbjct: 366 HTQHKKGHI-RIWLFNNVL-INDGKGS---AYVIGNAADITERHELETDLKRTKELLERT 420

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA-----HKDDVLKTEKYPLL 262
           +++ +                +    +    +  +LT   A       + +L        
Sbjct: 421 NQVARIGGWEVDLGTQQLHWSTVTCEIHEVPEDFNLTPDNAMSFYTGDNRILLDAVVEQA 480

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS---KESFEYLSHRNHPSLSAYFDEGE 319
            +  S    +    T    +   +        +    +    +              +  
Sbjct: 481 ITNGSPWQIELQITTWRGRKLWVRSIGHAEFEDGVCKRLYGTFQDIDEKKKADLAIQQSR 540

Query: 320 NLTPETVDKCPIP--FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL---------ST 368
            L  + ++             G +   N     L  YK+ +                 + 
Sbjct: 541 QLLEDVLESASEVSIIATDHEGIITLFNKGAERLLGYKAGEVTGKESWTILHAEEEIMNR 600

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
            ++   LS  +     +         +       I+ +      +  +            
Sbjct: 601 SIELSALSGQHIEGFEVFTYVPELEGSERREWTYIRKDGSQI--IISMVVTPIRDNAVIT 658

Query: 429 PQNGIEPEDVDTRINKRKMEIEV 451
              GI  +  + +  +R ++   
Sbjct: 659 GYLGIAVDITERKKAERDLKEAK 681



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/189 (13%), Positives = 63/189 (33%), Gaps = 12/189 (6%)

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471
           A   +  E A           I  E +   I   +   E+     + + +   + I +  
Sbjct: 129 AFIVLHTEPARLTSNEQTALSILAEKISDTIQTNRRRQEMHYFTRLFDLSEGLVCITDFS 188

Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
           G +   N+A + + G+P  D+        +  +  +     L ++   +   T+      
Sbjct: 189 GRLWQFNKAFTTVLGWPEADLQTMSALDLVHPDDTASTGKELAKM--GEGASTISFTHRV 246

Query: 532 STKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF--- 588
            T E     ++ +    P +        DI+    ++  L  ++      ++ ++ F   
Sbjct: 247 RTAEGDYRLIQWVATPEPHTGNIFAMGRDITSETLKEQALIESE------TNARTFFENS 300

Query: 589 LARVS-HEI 596
           L  +  H++
Sbjct: 301 LGMMCRHDL 309


>gi|83312195|ref|YP_422459.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82947036|dbj|BAE51900.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 657

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 129/591 (21%), Positives = 230/591 (38%), Gaps = 17/591 (2%)

Query: 223 DIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQ 282
                        ++++V +  E+ AH+ +  +     L                 ++  
Sbjct: 74  RGEYGSDCDVEATVRHRVDAAMEFQAHRFERTRPNGTILEIIGNPLPGGGFVTTYSDVTV 133

Query: 283 YTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NL 341
             +        N+  +       +                  TV   P    ++ +  NL
Sbjct: 134 NRQVAENLRDSNDRLDQMVERRTQALQDSEERHRAYGEFLEATVKHMPQGVCLFDNDLNL 193

Query: 342 FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY-RSDRTCIAASARL 400
             AN  F  LT+  +  +++       +L   +  +     P  L  R            
Sbjct: 194 VVANKIFFDLTQIPASFNVKGINFHEFMLYNAQRGEYGPGDPAELANRRLEIARRMEPHA 253

Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
                     + +   P                  +       +  +        ++L+A
Sbjct: 254 FDRIRPDGTVIEVRGNPIPGR-------GFISTFTDITARAKAEESLREAATMARAMLDA 306

Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520
               + +I  +G I+  N+  +       + ++       +          Y  + +   
Sbjct: 307 PGLLVLLIRMDGTIVDLNQEAATGLSSTKDAMIGANIFTVMPPKVAERRFAYAQQAVFEG 366

Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIA 578
                E       ++ +     +    +         +  HD++     + +L  A  +A
Sbjct: 367 HAVYFEDE-----RDGRWFETTMTPYPMDQDGVHRVMIIAHDVTHRHHAEQRLREATAMA 421

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
           +  +  K+DFLA +SHE+RTPL AI+GFSE+I  + FGP+G+ RY  Y   I+ +G  +L
Sbjct: 422 QAANRTKTDFLAAMSHELRTPLNAILGFSEIIAREMFGPVGD-RYRIYGQDINSAGQHLL 480

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
            ++ND+LDIS+IE G   L  E V+  E V   + LV   A    I +R      +P ++
Sbjct: 481 AMINDILDISRIEIGAFTLCVEQVNPHELVDSCLRLVTTRAEAAGIRLREDLPETLPSLM 540

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
            D R  KQI +N+L NA+ FTP+GG + +     S+  +   V DTG+GM+  ++  A+ 
Sbjct: 541 IDSRRTKQILINLLGNAVKFTPAGGSVTLRGALQSDGGMAFHVADTGIGMSEADIAIALS 600

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           PFGQ+      R EG GLGLPLAK++ + + G   I STP +GT + + FP
Sbjct: 601 PFGQVDTGLDRRFEGAGLGLPLAKSLAELHGGSLEIISTPGEGTTVSVYFP 651



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/140 (12%), Positives = 47/140 (33%), Gaps = 4/140 (2%)

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI-LRKPFTVFLEQNTPSVM--- 509
           +  +L+    GI++ + +  ++  NR  + L  +P   +     F   +  N        
Sbjct: 20  MQGVLDHLDQGISVFSADLRLILWNRRFTDLHDFPEGFLTHGLGFADIIRFNAQRGEYGS 79

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN 569
           +  +   +   +   +E       +     ++  II        +  T  D++  +Q   
Sbjct: 80  DCDVEATVRHRVDAAMEFQAHRFERTRPNGTILEIIGNPLPGGGFVTTYSDVTVNRQVAE 139

Query: 570 KLSHAKKIAEKESSHKSDFL 589
            L  +    ++    ++  L
Sbjct: 140 NLRDSNDRLDQMVERRTQAL 159


>gi|209965762|ref|YP_002298677.1| signal transduction histidine-protein kinase BarA [Rhodospirillum
           centenum SW]
 gi|209959228|gb|ACI99864.1| signal transduction histidine-protein kinase BarA [Rhodospirillum
           centenum SW]
          Length = 780

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 125/635 (19%), Positives = 245/635 (38%), Gaps = 23/635 (3%)

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
             +++ + L         V ++   +    +P P     +  + LT   A     +    
Sbjct: 87  AGERQVAALAPFDGPVGRVMRKGSALLE-NTPAPTGSAGDGPAPLT---AFLGIPIMAPP 142

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
                    + P   D   I   Q         L+    E    L  R+   + A   + 
Sbjct: 143 VFTGLVALGNRPGGYDPGQIEALQPLVTTATALLRARRAEEKWALVERHMRLVRAELRDQ 202

Query: 319 ENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
           +    + +    +  + ++    +   N  +  +  Y   +   ++      L  P+  +
Sbjct: 203 KERMDQVIAGTGVGIWDWNPQTGVLIINERWAGIVGYTLAELQPVSIATWRRLVHPQDLE 262

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
                   ++       A   R+                     +     +   G   + 
Sbjct: 263 KAETLLEDVFAGRSPLYACDIRMR--HKAGHWVWVRDSGRIMGRDSAGRALRMVGTHLDV 320

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
            + R    +      Q+ +IL A  DGI  ++R+  I   NRA   LFG+P + I+ +  
Sbjct: 321 TEERRTLEQALDYRGQIEAILAAVPDGIMTVDRDLRITRVNRAAEALFGWPADSIVGQTV 380

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLE-----KITLGSTKEEKLLSLRIIIKK--LPF 550
            V L +                +           +   G  ++  L  + + +    +  
Sbjct: 381 DVLLPEGQAETHGRLARAFFKTEEPDARRQMAGWRAVQGRKRDGSLFPVLVTLSATLIDG 440

Query: 551 SSCYSLTMHDIS-------EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
                  + D++       + +   +++    K A+  +  K+ FLA +SHE+RTPL AI
Sbjct: 441 QPMVVAALKDMTVIEQQKADLRALADEVGEQLKAAQAANHAKNRFLAALSHELRTPLNAI 500

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           IGFSE++       +   +  EYA  + ++G  +L +++DLLD+++IE+ ++ L  EP  
Sbjct: 501 IGFSELVATDTDEHIDPEKRREYAADVAQAGTHLLALISDLLDLARIEANRIELEIEPCP 560

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
            D   S+A+ ++     +K I +  + A ++PR+ AD R+V+QI  N+L NA  FTP GG
Sbjct: 561 PDGLTSDAVRMLGPSLRDKGIELEVAVAPDLPRVAADRRAVQQILTNLLGNAGKFTPKGG 620

Query: 724 QIIISTTHTSN--EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           ++ ++         +V   V DTG G+   +L    +PF Q+ + ++    G GLGL ++
Sbjct: 621 RVTVTVGLDRAVPGQVRFTVEDTGCGVPADKLPLLGQPFVQVGDKRRASAPGLGLGLAIS 680

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           + +V+   G   I S   + T +    P    + P
Sbjct: 681 RGLVERMGGMLRIESELGRWTRVSFGLPTPGGATP 715



 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/254 (9%), Positives = 70/254 (27%), Gaps = 20/254 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL-LKRQNTWYGKT 147
           +D    +  ++       G  A  ++G  +  +      + +  +     K +     + 
Sbjct: 351 VDRDLRITRVNRAAEALFGWPADSIVGQTVDVLLPEGQAETHGRLARAFFKTEEPDARRQ 410

Query: 148 TL-------WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
                       +G+   V + L+A  I   + +         +    V    +A  + L
Sbjct: 411 MAGWRAVQGRKRDGSLFPVLVTLSATLI---DGQPM---VVAALKDMTVIEQQKADLRAL 464

Query: 201 DKKF-SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
             +    L   +  + +  +    +  +   P +  +       T+   H D   + E  
Sbjct: 465 ADEVGEQLKAAQAANHAKNRFLAALSHELRTPLNAIIGFSELVATDTDEHIDPEKRREYA 524

Query: 260 PLLTSEE----SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR-NHPSLSAY 314
             +        + + +  D   I  N+   +         + ++   L        +   
Sbjct: 525 ADVAQAGTHLLALISDLLDLARIEANRIELEIEPCPPDGLTSDAVRMLGPSLRDKGIELE 584

Query: 315 FDEGENLTPETVDK 328
                +L     D+
Sbjct: 585 VAVAPDLPRVAADR 598



 Score = 51.2 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 27/364 (7%), Positives = 79/364 (21%), Gaps = 24/364 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFK---MIGMRLCDVSDILHIDPNNHIGDLLKRQNT 142
            W+ +    +  I+E     +G    +   +       +     ++    + + +    +
Sbjct: 217 IWDWNPQTGVLIINERWAGIVGYTLAELQPVSIATWRRLVHPQDLEKAETLLEDVFAGRS 276

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
                 +        +V +  +   I  R+      R  G       +            
Sbjct: 277 PLYACDIRMRHKAGHWVWVRDSGR-IMGRDSAGRALRMVGTHLDVTEERRTLEQALDYRG 335

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL----------RMKNKVSSLTEYYAHKDD 252
           +   +                I         L          +  + +    +   H   
Sbjct: 336 QIEAILAAVPDGIMTVDRDLRITRVNRAAEALFGWPADSIVGQTVDVLLPEGQAETHGRL 395

Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
                K     +       +                  +      +     + ++   + 
Sbjct: 396 ARAFFKTEEPDARRQMAGWRAVQGRKRDGSLFPVLVTLSATLIDGQPMVVAALKDMTVIE 455

Query: 313 AYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL--- 369
               +   L  E  ++              +A   FL    ++    +    G S L   
Sbjct: 456 QQKADLRALADEVGEQLKAAQAAN------HAKNRFLAALSHELRTPLNAIIGFSELVAT 509

Query: 370 -LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
             D     +        + ++    +A  + L  +     N + +   P        + +
Sbjct: 510 DTDEHIDPEKRREYAADVAQAGTHLLALISDLLDLARIEANRIELEIEPCPPDGLTSDAV 569

Query: 429 PQNG 432
              G
Sbjct: 570 RMLG 573


>gi|119897783|ref|YP_932996.1| putative histidine protein kinase [Azoarcus sp. BH72]
 gi|119670196|emb|CAL94109.1| putative histidine protein kinase [Azoarcus sp. BH72]
          Length = 613

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 115/633 (18%), Positives = 220/633 (34%), Gaps = 52/633 (8%)

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
            +               +                        L        D    E+  
Sbjct: 6   CRLMQDESPDACIVLDADGAVRHWNGGAVRLFGYNAAEADGQLLIDLTVPPDRRAAEQAL 65

Query: 261 LLTSEESSLPEQE-DFHTINLNQYTKKQYFGTLQNNSKESF-EYLSHRNHPSLSAYFDEG 318
           L           E      + +          +  +        +       ++      
Sbjct: 66  LDDLPPLGNATHESVRQRKDGSLVHVALSMRRVHADGLPYVLTSMKDVTQLKVAREARLV 125

Query: 319 ENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKY-------KSVDDI-------EIA 363
           E    + ++  P     V + G + ++N     +  Y       + ++ +          
Sbjct: 126 ETRYRDLLESMPDGIVMVNALGRIVFSNQQADAMFGYGAGELRGQPIEALLPARLRTAHV 185

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
           G  S     P+         +   R D +       L  +  +    +           +
Sbjct: 186 GHRSHYFGQPRTRTMGMGLELFGLRHDGSEFPLEISLSPLHTDEGTMVLSAIRDIAGRKK 245

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
                                        +   +LE+  D I I+NR+G I+  N    +
Sbjct: 246 A--------------------------EEKFRGLLESAPDAIVIVNRDGRIVLVNSQAER 279

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT--LEKITLGSTKEEKLLSL 541
           LFGY   +++ +   + + +   +    +     +    +   +     G  +  +   +
Sbjct: 280 LFGYARSELIDQQIEMLMPERFRAQHPGHRNSFFTDPRVRPMGVGLELFGRRRNGEEFPV 339

Query: 542 RIIIKKLPFSSCYSLT--MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
            I +  L       ++  + DI+E K+ +  L        + ++ K  FLA +SHE+RTP
Sbjct: 340 EISLSPLETEEGTLVSSAIRDITERKRFERALQEKNVELAQANAAKDHFLASMSHELRTP 399

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L AIIGF+  +  +  GPL N    +    + RS + +L ++NDLLD+++IE+GK    F
Sbjct: 400 LNAIIGFTGTLLMKLPGPL-NEDQEKQLRTVQRSASHLLSLINDLLDVARIEAGKFEPVF 458

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719
           EPV L   + E   +++  A  K + +          +  D R+  QI +N+L NAI FT
Sbjct: 459 EPVDLCATLEELAVVLRPQAEAKGLRLELKLPGGSCVVETDQRAFSQIVINLLQNAIKFT 518

Query: 720 PSGGQIIISTTHTSNEE---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
             G +I ++      +    V L+V D+G+G+   +  +   PF +I  +     EGTGL
Sbjct: 519 EHG-RIELALARIEADGRPAVELQVADSGIGIQPDDQTRLFAPFARITPAAGPAQEGTGL 577

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GL L   +     G+  + ST  +G++  +I P
Sbjct: 578 GLHLCLKLAAQLGGQIAMHSTYGEGSVFSLILP 610



 Score = 88.9 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/389 (9%), Positives = 99/389 (25%), Gaps = 49/389 (12%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN-HIGDLLKRQNTWYGKT 147
           +DA G ++  +    +  G  A +  G  L D++           + D L        ++
Sbjct: 20  LDADGAVRHWNGGAVRLFGYNAAEADGQLLIDLTVPPDRRAAEQALLDDLPPLGNATHES 79

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFS-----GFRGFGIVHVNRVDNDPRALGKRLDK 202
                +G+ ++  + L+   +++    +            +    R+             
Sbjct: 80  VRQRKDGSLVH--VALSMRRVHADGLPYVLTSMKDVTQLKVAREARLVETRYRDLLESMP 137

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
               +           ++   +F   +     +    +       AH          P  
Sbjct: 138 DGIVMVNALGRIVFSNQQADAMFGYGAGELRGQPIEALLPARLRTAHVGHRSHYFGQPRT 197

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
            +    L  +      + +++  +     L  +       LS     +     +E     
Sbjct: 198 RTMGMGL--ELFGLRHDGSEFPLEISLSPLHTDEGTM--VLSAIRDIAGRKKAEE---KF 250

Query: 323 PETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEI--------------AGGLS 367
              ++  P     V   G +   N     L  Y   + I+                G  +
Sbjct: 251 RGLLESAPDAIVIVNRDGRIVLVNSQAERLFGYARSELIDQQIEMLMPERFRAQHPGHRN 310

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
           +    P++        +   R +         L  +                   +  E 
Sbjct: 311 SFFTDPRVRPMGVGLELFGRRRNGEEFPVEISLSPL-------------------ETEEG 351

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
              +    +  + +  +R ++ + ++L  
Sbjct: 352 TLVSSAIRDITERKRFERALQEKNVELAQ 380


>gi|118581133|ref|YP_902383.1| PAS/PAC sensor signal transduction histidine kinase [Pelobacter
           propionicus DSM 2379]
 gi|118503843|gb|ABL00326.1| PAS/PAC sensor signal transduction histidine kinase [Pelobacter
           propionicus DSM 2379]
          Length = 568

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 126/552 (22%), Positives = 225/552 (40%), Gaps = 51/552 (9%)

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSV-------- 357
               +       E       +K PI  F  S  G     N +   + +Y S         
Sbjct: 15  ARNLVEEALRASEEKFRNIFEKAPIGIFQSSIEGRFTSVNGTLATMFRYSSPREMIMDAR 74

Query: 358 ----DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
                        + ++   + S     + +   R D +   A+  +  ++   EN   +
Sbjct: 75  DISRQLFICPDQRNAIIARARDSLTYVREEIAYRRRDGSEFIANLYMRLLRGATENEADL 134

Query: 414 --TFIPFEKANQFPENMPQ--------------------NGIEPEDVDTRINKRKMEIEV 451
                   +  +  +++                        +  E  +    +R +    
Sbjct: 135 EGFVEDITERKRAEDSLRVYQENLENLVRARTSELQDANERLTREIEERNRAERILIERE 194

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
            Q   ++E+ +  I     +G I+  NR     FGY  E++L +     L     S  + 
Sbjct: 195 AQYRDLVESANCVILRWLPDGRIIFFNRFAQSFFGYREEEVLGRSIIGTLIPPADSTGHE 254

Query: 512 Y--LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWK 565
              L   +          I     K  +L+ +    K +               DI++  
Sbjct: 255 LTSLATDIVSHPEAYAHNINENLRKNGELVWVAWTNKPILAPDGSVAEILSIGIDITQLV 314

Query: 566 QEKN-------KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
             +        +L+ AK+ AE     KS FLA +SHE+RTPL +IIGF+ ++     GP+
Sbjct: 315 HTEQALRRTLDELAWAKERAESADHLKSAFLATMSHELRTPLNSIIGFTGILLQGLSGPI 374

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
            + +  +    +  S N +L +++D+LDISKIE+G++ +  EP  L E++ + +  V+  
Sbjct: 375 NDEQAKQ-LGMVKNSANHLLSLISDVLDISKIEAGQLKVEHEPFDLRESILKVVQSVRPL 433

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738
           A +K + +    A  +  I  D R V+Q+ LN+LSNA+ FT  GG + +S     +  + 
Sbjct: 434 AEKKGLDLSCDLAEQVGNISGDARRVEQVLLNLLSNALKFTEQGG-VRVSCGREGDAFLT 492

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
             VRD+G+G+ + ELE+  KPF Q+      + EGTGLGL ++K +V+   G+  + S+P
Sbjct: 493 -SVRDSGIGIKDEELERLFKPFHQVDTGLSRKYEGTGLGLSISKKLVELMGGEIRVESSP 551

Query: 799 AKGTLIEIIFPL 810
            KG+      PL
Sbjct: 552 GKGSTFAFTLPL 563



 Score = 70.8 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 20/166 (12%), Positives = 50/166 (30%), Gaps = 4/166 (2%)

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
           +    +        + +  +     +  +I E    GI   + EG   S N  ++ +F Y
Sbjct: 4   ISTLLLSTLVNARNLVEEALRASEEKFRNIFEKAPIGIFQSSIEGRFTSVNGTLATMFRY 63

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL----SLRI 543
                +         Q              + D    + +      ++         +R+
Sbjct: 64  SSPREMIMDARDISRQLFICPDQRNAIIARARDSLTYVREEIAYRRRDGSEFIANLYMRL 123

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
           +       +     + DI+E K+ ++ L   ++  E     ++  L
Sbjct: 124 LRGATENEADLEGFVEDITERKRAEDSLRVYQENLENLVRARTSEL 169



 Score = 46.6 bits (109), Expect = 0.017,   Method: Composition-based stats.
 Identities = 38/380 (10%), Positives = 84/380 (22%), Gaps = 56/380 (14%)

Query: 55  TDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI 114
           T  N  ++       SE  F        +   +     G    ++  L       + + +
Sbjct: 11  TLVNARNLVEEALRASEEKFRNIFEKAPIG-IFQSSIEGRFTSVNGTLATMFRYSSPREM 69

Query: 115 GMRLCDVSDILHIDPNNH---IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSR 171
            M   D+S  L I P+     I            +      +G+     + +  L     
Sbjct: 70  IMDARDISRQLFICPDQRNAIIARARDSLTYVREEIAYRRRDGSEFIANLYMRLL--RGA 127

Query: 172 NREFSGFRGFG-------------------------------------IVHVNRVDNDPR 194
               +   GF                                      +       N   
Sbjct: 128 TENEADLEGFVEDITERKRAEDSLRVYQENLENLVRARTSELQDANERLTREIEERNRAE 187

Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF---SQQSPPPHLRMKNKVSS-----LTEY 246
            +    + ++  L E              I             R +  +       L   
Sbjct: 188 RILIEREAQYRDLVESANCVILRWLPDGRIIFFNRFAQSFFGYREEEVLGRSIIGTLIPP 247

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
                  L +    +++  E+      +    N            +        E LS  
Sbjct: 248 ADSTGHELTSLATDIVSHPEAYAHNINENLRKNGELVWVAWTNKPILAPDGSVAEILSIG 307

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
              +   + ++       T+D+           +  +   +FL    ++    +    G 
Sbjct: 308 IDITQLVHTEQALRR---TLDELAWA--KERAESADHLKSAFLATMSHELRTPLNSIIGF 362

Query: 367 STLLDAPKLSDNNAIKPVML 386
           + +L        N  +   L
Sbjct: 363 TGILLQGLSGPINDEQAKQL 382


>gi|260461547|ref|ZP_05809794.1| PAS/PAC sensor hybrid histidine kinase [Mesorhizobium opportunistum
           WSM2075]
 gi|259032617|gb|EEW33881.1| PAS/PAC sensor hybrid histidine kinase [Mesorhizobium opportunistum
           WSM2075]
          Length = 1255

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 135/754 (17%), Positives = 265/754 (35%), Gaps = 47/754 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAF-KMIGMRLCDV-SDILHIDPNNHIGDLLKRQNTWYGK 146
           + A    + I+               IG    ++      IDP        +R       
Sbjct: 190 LGADMRAEVINSAFHDFWRIDPNRAGIGSSFRELMEASRAIDPFGADETAWQRHVAEREA 249

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                + G+   +P +     + S      G R    V V  +               + 
Sbjct: 250 EIRAGVAGSRQ-LPHNDGRTLVASLASLAGGKRLISYVDVTDMKGRETEAEDARKNLATV 308

Query: 207 LHEIKKGHSSVEKEKYDIFSQQS-----------PPPHLRMKN------KVSSLTEYYAH 249
           L  +  G    +++   +F+ +              P    +        V         
Sbjct: 309 LESLPAGVIIYDRDDKFVFANRKLQDSLPALKPYWQPGRTFREALEFGHSVGYFRSSGDA 368

Query: 250 KDDVLKTEKYPLLTSE--ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
             D L                      +  +N +    + Y     + +           
Sbjct: 369 VVDSLYAVDTERWLDGMLRRYRLPNSSYERLNADGRWYQVYDMRTDDGTFIGVRVDISDL 428

Query: 308 HPSLSAYFDEGE--NLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAG 364
               +A  D     +L    +D+ P+  F+ +   N+ + N ++  LT     D I    
Sbjct: 429 KSREAALRDSMRQIDLFRHVMDELPVAAFIKAQDLNIEFVNKAWCALTGLAKEDVIGRTD 488

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
               L  A +    +     ++   +            +         +           
Sbjct: 489 --RQLFGAEEAEGFSHDDADVVATGN-----VREVEEPVTHRDGTVRQLMTRKSRLVASD 541

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQ---LCSILEATSDGIAIINREGIILSTNRAV 481
             ++   G   +  D +  +R +E  + +     S+++     I     +      N+  
Sbjct: 542 G-SVHLVGSSTDITDVKARERALEESMRENEVFRSLIDNVPVSIYAKRSDLRQFYVNKGW 600

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
             L G   E+ + K        +  + +   L  + + + ++  E +TL         + 
Sbjct: 601 CDLTGLGKEEAIGKTDVEIFGPDGEAFVAGDLAVLRTGETQEIEETVTLADGSVRHQFAR 660

Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
           +  +     S     +  DI+E K  + +L  A++ A      KS+FLA +SHEIRTP+ 
Sbjct: 661 KGAMIASDGSLYLIGSTTDITELKMREAELREARQRAVLADRAKSEFLANMSHEIRTPMN 720

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
            ++G +E++         +P+   + + I +SGN +L I+ND+LD SKI++G++ L   P
Sbjct: 721 GVLGMAELLAKSNL----DPKQKTFTDIIVKSGNALLTIINDILDFSKIDAGQLVLDPAP 776

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTP 720
            +L EA+ +  +LV   A EK + +       +  + + D+  ++QI  N+L NA+ FT 
Sbjct: 777 FNLAEAIEDVATLVSTRAKEKDLELIVRIEPRLGSLFIGDVGRIRQIVTNLLGNAVKFTD 836

Query: 721 SGGQIIISTTHTS---NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
            G  +++  T        ++ + V DTG+G+   +L+   + F Q+  S   R EGTGLG
Sbjct: 837 EG-HVLVDVTGERMPTGTKLTISVTDTGIGIPEEKLKLVFEKFSQVDTSSTRRHEGTGLG 895

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIE--IIFP 809
           L +   +V+   GK  + S   KG+     +  P
Sbjct: 896 LAITSRLVELMGGKIGVESAEGKGSTFWFEVTLP 929



 Score =  143 bits (361), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 50/526 (9%), Positives = 134/526 (25%), Gaps = 40/526 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL--LKRQNTW 143
            W  DA      +S+      G     ++G    D  + +     +    L  L+ +  +
Sbjct: 50  IWETDAELRFSWLSQGYQAATGIDPADVLGRFRFDFLNQVLKGNRSAAAHLEDLQARRPF 109

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                     G +    +  +  P +    +F+G+RG G                    +
Sbjct: 110 RDFVYELKGGGADCR-WVLTSGFPRFDSEGKFAGYRGIG--RNITALAAAFEEMAPKQDE 166

Query: 204 FSHL---------------------HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS 242
                                     +++    +     +              +  + +
Sbjct: 167 DVSSQSLVNLRTMVDSMPIGVVVLGADMRAEVINSAFHDFWRIDPNRAGIGSSFRELMEA 226

Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302
                    D    +++      E            + +  T      +L    K    Y
Sbjct: 227 SRAIDPFGADETAWQRHVAEREAEIRAGVAGSRQLPHNDGRTLVASLASLAG-GKRLISY 285

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIE 361
           +   +        ++        ++  P    +Y       +AN                
Sbjct: 286 VDVTDMKGRETEAEDARKNLATVLESLPAGVIIYDRDDKFVFANRKLQDSLPALKPYWQP 345

Query: 362 IAGGLSTLLDAPKLS--DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF--IP 417
                  L     +    ++    V    +  T       L   +    +   +      
Sbjct: 346 GRTFREALEFGHSVGYFRSSGDAVVDSLYAVDTERWLDGMLRRYRLPNSSYERLNADGRW 405

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ---LCSILEATSDGIAIINREGII 474
           ++  +   ++    G+  +  D +  +  +   + Q      +++       I  ++  I
Sbjct: 406 YQVYDMRTDDGTFIGVRVDISDLKSREAALRDSMRQIDLFRHVMDELPVAAFIKAQDLNI 465

Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
              N+A   L G   ED++ +              +H   ++++    + +E+       
Sbjct: 466 EFVNKAWCALTGLAKEDVIGRTDRQLFGAEEAEGFSHDDADVVATGNVREVEEPVTHR-- 523

Query: 535 EEKLLSLRIIIKKLPFSSC---YSLTMHDISEWKQEKNKLSHAKKI 577
           +  +  L     +L  S        +  DI++ K  +  L  + + 
Sbjct: 524 DGTVRQLMTRKSRLVASDGSVHLVGSSTDITDVKARERALEESMRE 569



 Score = 65.8 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 22/297 (7%), Positives = 69/297 (23%), Gaps = 20/297 (6%)

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYK 355
           +E  +   H           +      + V+      +         + +  +   T   
Sbjct: 14  REPGKVAVHGGDALPHTADMDRAEGLRQLVEAGSDWIWETDAELRFSWLSQGYQAATGID 73

Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
             D +          D                   +        ++ ++    +   +  
Sbjct: 74  PADVLGR-----FRFDFLNQVLKGNRSAAAHLEDLQARRPFRDFVYELKGGGADCRWVLT 128

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ---------LCSILEATSDGIA 466
             F + +   +     GI            +M  +  +         L +++++   G+ 
Sbjct: 129 SGFPRFDSEGKFAGYRGIGRNITALAAAFEEMAPKQDEDVSSQSLVNLRTMVDSMPIGVV 188

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
           ++  +      N A    +               L + + ++      E          E
Sbjct: 189 VLGADMRAEVINSAFHDFWRIDPNRAGIGSSFRELMEASRAIDPFGADETAWQRHVAERE 248

Query: 527 KITLGSTKEEKLLS-----LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578
                     + L        +            ++  D+++ K  + +   A+K  
Sbjct: 249 AEIRAGVAGSRQLPHNDGRTLVASLASLAGGKRLISYVDVTDMKGRETEAEDARKNL 305


>gi|291569600|dbj|BAI91872.1| two-component hybrid histidine kinase [Arthrospira platensis
           NIES-39]
          Length = 897

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 119/638 (18%), Positives = 246/638 (38%), Gaps = 30/638 (4%)

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSL- 243
                        + +   L  +     +    +    +              + ++   
Sbjct: 22  HRLQQLETALAESENRLRDLFHLAPIGIAEISTEGYFLAVNRAFCRWVGYSQADLINLNF 81

Query: 244 -TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINL----NQYTKKQYFGTLQNNSKE 298
               +    D+ + +   L+  E      ++ +   +        T       + N    
Sbjct: 82  NAITHPEDGDICREKFGQLINREIDKYTLEKRYRHRDGHWVYGILTCYLRLDVMGNPLCA 141

Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY--ANPSFLLLTKYKS 356
             + +             E E      +D  P   F +   NL +   N ++        
Sbjct: 142 IAQIIDITERKRSEQEIREKEEYLRLLLDNIPQQVF-WKDTNLVFRGCNRNWAEAAGLDG 200

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
            + +        L     +++    K   +  S    +   A    +       + +   
Sbjct: 201 SESVVGKTDFD-LFADADIAEFYREKDRQVLESRTPEMNVVAPKQKL-GPGGRRIWLDVS 258

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476
                +     +   G+  +  + +    K+ +   Q    ++ + D +   +  G    
Sbjct: 259 RIPMLDSQGNVLGILGVLEDITERKEIDEKLRLT--QFS--IDKSRDYVLFSDINGRFFY 314

Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
            N A  K+ GY  E++L           +P   +    ++       +    +   TK  
Sbjct: 315 VNEAACKILGYSQEELLTMEVEDIDPLASPGGWSIAWDDLRDQG---SFTFESSHYTKTG 371

Query: 537 KLLSLRIIIKKLPFSSCY--SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
           + +++ I +  L ++        + DI + KQ +  L  AK+ AE  S  KS+FLAR+SH
Sbjct: 372 QAIAVEITLSYLEYNHREYGCAVVRDIRDRKQTEIALQQAKEAAETASRAKSEFLARMSH 431

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNP--RYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           E+RTPL AI+GF+++++ + +     P   + E+   I RSG  +L+++ND+L++SKIE+
Sbjct: 432 ELRTPLNAILGFTQLMERELYHSPNIPLSDHKEHLEIIGRSGEHLLELINDVLEMSKIEA 491

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNI 711
           G+++L+    +L   ++    +++L A+ K++ +  +  +NIP  I AD + ++Q   N+
Sbjct: 492 GRVSLNPTNFNLISLLNSLREMLELPASSKKLTLDFAIDDNIPTYIYADEQKLRQCLTNL 551

Query: 712 LSNAIHFTPSGGQI-IISTTH--TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
           L NAI FT  GG I  +          ++   V+DTG G+   E++   +PF Q    + 
Sbjct: 552 LGNAIKFTLQGGVILRVKLGKFNHDLGQLCFEVQDTGPGIDASEMDLLFEPFSQTETGRN 611

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
            + +GTGLGL + +  +    G+  + S   KGT+   
Sbjct: 612 SQ-QGTGLGLSITQKFIGLMGGEIQVSSERGKGTIFRF 648



 Score = 98.9 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 43/395 (10%), Positives = 93/395 (23%), Gaps = 26/395 (6%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQ-NTWYG 145
            I   GY   ++    + +G     +I +    ++     D      G L+ R+ + +  
Sbjct: 51  EISTEGYFLAVNRAFCRWVGYSQADLINLNFNAITHPEDGDICREKFGQLINREIDKYTL 110

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +      +G   +V   L                    +             +  ++   
Sbjct: 111 EKRYRHRDGH--WVYGILTCYLRLDVMGNP--LCAIAQIIDITERKRSEQEIREKEEYLR 166

Query: 206 HLHEIKKGHSSVEKEKYDIFS----QQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
            L +        +                      ++ V           D+ +  +   
Sbjct: 167 LLLDNIPQQVFWKDTNLVFRGCNRNWAEAAGLDGSESVVGKTDFDLFADADIAEFYREKD 226

Query: 262 LTSEESSLPEQEDF-----HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
               ES  PE               +         + ++       L      +     D
Sbjct: 227 RQVLESRTPEMNVVAPKQKLGPGGRRIWLDVSRIPMLDSQGNVLGILGVLEDITERKEID 286

Query: 317 EGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDI---------EIAGGL 366
           E   LT  ++DK          +G  FY N +   +  Y   + +           + G 
Sbjct: 287 EKLRLTQFSIDKSRDYVLFSDINGRFFYVNEAACKILGYSQEELLTMEVEDIDPLASPGG 346

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
            ++         +       Y      IA    L  +++N                Q   
Sbjct: 347 WSIAWDDLRDQGSFTFESSHYTKTGQAIAVEITLSYLEYNHREYGCAVVRDIRDRKQTEI 406

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
            + Q     E      ++    +    L + L A 
Sbjct: 407 ALQQAKEAAETASRAKSEFLARMSHE-LRTPLNAI 440


>gi|332534764|ref|ZP_08410591.1| signal transduction histidine kinase [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332035788|gb|EGI72273.1| signal transduction histidine kinase [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 975

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 100/519 (19%), Positives = 209/519 (40%), Gaps = 25/519 (4%)

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEI 362
               +  L       E+     +         +   G +   N +   +  ++       
Sbjct: 120 GMVRYRMLLEDKSAKESRLNAILGTAIDGIVTIDHTGIILSFNEAASKIFGWQENQV--- 176

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSD-RTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
            G    +L    ++ ++    +  +  D    I  +  ++    N         +   + 
Sbjct: 177 QGKNVKMLMDDNIAKHHDEYLLNAHNVDLGKIIGINRDVYAKHMNGHVFP--IRLGIGEV 234

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI---INREGIILSTN 478
           NQ   N    G   +  + R  ++ +E +  +  S+++    G+A     +    +L  +
Sbjct: 235 NQPGHNPLYVGFITDLTEQRALQQSLEEKEQKYRSLIDNMP-GVAFRCKFDDNWTMLFIS 293

Query: 479 RAVSKLFGYPVEDILRKPFTV--FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
             + +L GY   +           + ++    +   +T+ +    + ++        +  
Sbjct: 294 PNIIELTGYNPNEFTEHCIEFNDLVLKSDQKQIVDEVTKAVDAKSQYSI--EYRIRHRNG 351

Query: 537 KLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
           K+L L         +          + DI+E K+ + KL  AK  AE+ +  K  F+A +
Sbjct: 352 KILWLLDKGSIDFDAQGNPKWIDGVLVDITERKEYEEKLEQAKFKAEEAAHAKQSFMANM 411

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHEIRTP+ +IIGFS+++ +       +    ++   ++ +   +L ++N++LD +K+E 
Sbjct: 412 SHEIRTPMNSIIGFSDLLMDTPL----DQEQQKHLVTVNNAARSLLRLLNEILDSAKLER 467

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNI 711
           GK+ +     SL   +   IS   L A +K + ++     ++      D   ++Q+  N+
Sbjct: 468 GKLTIEPVHFSLKPVIDSIISTFWLEAKKKDLELKLHIKESVSSTYYGDPDRLRQVLTNL 527

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           + NAI FT  G  + ++   T N+ +   V+DTG+G+    ++   +PF Q   +   R 
Sbjct: 528 IGNAIKFTEEGS-VTVTVGMTQNQHLFFEVQDTGIGIAKDRIQAVFQPFEQADGTTTRRF 586

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            GTGLG  ++K +V+   G   + S   KGT      PL
Sbjct: 587 GGTGLGTTISKQLVELMGGTINLVSELGKGTCFYFSLPL 625


>gi|242240530|ref|YP_002988711.1| multi-sensor hybrid histidine kinase [Dickeya dadantii Ech703]
 gi|242132587|gb|ACS86889.1| multi-sensor hybrid histidine kinase [Dickeya dadantii Ech703]
          Length = 1374

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 98/542 (18%), Positives = 201/542 (37%), Gaps = 51/542 (9%)

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGL 366
             +      +  +     V+  P         G +   N     L  Y   + I     L
Sbjct: 342 RRADRKQLQQERSKLEMIVESSPDGIIGKDTQGIVISWNGGAERLFGYTREEAIGRP--L 399

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
             L+   +  D      ++        ++A   L        + L ++       +    
Sbjct: 400 VDLIIPEQFKDEEPD--ILRRVCAGETVSAFETLR--HRKDGSELVVSATISPIRSPDGR 455

Query: 427 NMPQNGIEPEDVDTRINKR-------KMEIEVMQ-----------LCSILEATSD-GIAI 467
            +  +    +    +  +R       ++E +V Q             ++L A  +  I  
Sbjct: 456 VIGVSKTVRDISLQKEAERRIRNLNSELEQQVRQRTTELAEVNLLFRTVLSAAHEFCIIA 515

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE- 526
            +  G+I   N+   ++ GY  +D++ K                +       +     + 
Sbjct: 516 TDLNGVITFFNKGAVQMLGYSEDDVVGKATPAIFHDEDELASRRHELSDEYGEAIHGFDV 575

Query: 527 ------------KITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNK 570
                       +      K+     + +++  +         Y     DI+  +Q ++ 
Sbjct: 576 FTYKAQRNQSEHREWTYWRKDGSRFPVNLVVTAMRDEQDQLLGYLGVATDITRQRQAQDA 635

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           L  AK+ A++ +  K+ FLA +SHEIRTP+ A++G  +++      P    R   +A+  
Sbjct: 636 LEKAKRQADEANEAKTMFLANMSHEIRTPMNAVLGMLQLLLRNNLTP----RQHAFASKA 691

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
             +   +L ++ND+LD SKI++GK+ L  +P   +  +     +       K I +    
Sbjct: 692 HIAATSLLGLLNDILDYSKIDAGKLELDPQPFDFNAVMQHLAIMFSGNLRAKSIELLFDL 751

Query: 691 ANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EVILRVRDTGV 746
              + P ++ D   ++Q+ +N+LSNAI FT  G  I+ +     +    ++ + V D+G+
Sbjct: 752 DPQLSPYMIGDELRLQQVLINLLSNAIKFTDHGDVIVKTVLLAGDATTQQMRISVTDSGI 811

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G++  +  +    F Q   S   R  GTGLGL + K +V+   G   + S   +G+   +
Sbjct: 812 GISPEQQTRIFGEFIQAEASTTRRYGGTGLGLVICKRLVEKMAGVLEVDSALGQGSTFSL 871

Query: 807 IF 808
             
Sbjct: 872 TL 873



 Score =  127 bits (320), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 69/458 (15%), Positives = 138/458 (30%), Gaps = 52/458 (11%)

Query: 167 PIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFS 226
                   F G RGFG V           L +              G    E    +   
Sbjct: 101 ATLDLANNFPGARGFGFVRRVLRAELADYLDRERHAHLPDFSVSSFGDEQDELYVVEYLE 160

Query: 227 QQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKK 286
            +S   +  +     +   +  H  D        ++TS  S     +      L      
Sbjct: 161 PRSFSSNATVIGLDLASNPFRKHAADEAMLSGQAIITSPLSLKFGLDTISNSFLLFMPIY 220

Query: 287 QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANP 346
           +   T  + ++   +       P   A   + E+               +S G +     
Sbjct: 221 RDGVTPDDEAERRRKAFGWAYAPISMAEVLKNES---------------FSEGRV----- 260

Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
               + +   V ++          +   L       PV            S  +     +
Sbjct: 261 ----ILRLSDVTELGDPMVFYRSAEQEGLYPYYHDVPV-----LGRVWRFSLTVTPAYLD 311

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
              +L +  I          ++    +       R ++++++ E  +L  I+E++ DGI 
Sbjct: 312 ---TLNLFSITGVILFGIGLSVVMAMLVNTLKLRRADRKQLQQERSKLEMIVESSPDGII 368

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP-SVMNHYLTEILSLDLRQTL 525
             + +GI++S N    +LFGY  E+ + +P    +            L  + + +     
Sbjct: 369 GKDTQGIVISWNGGAERLFGYTREEAIGRPLVDLIIPEQFKDEEPDILRRVCAGETVSAF 428

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKE 581
              TL   K+   L +   I  +       +    T+ DIS  K+ + ++ +     E++
Sbjct: 429 --ETLRHRKDGSELVVSATISPIRSPDGRVIGVSKTVRDISLQKEAERRIRNLNSELEQQ 486

Query: 582 SSHKSDFLA----------RVSHE---IRTPLTAIIGF 606
              ++  LA            +HE   I T L  +I F
Sbjct: 487 VRQRTTELAEVNLLFRTVLSAAHEFCIIATDLNGVITF 524



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/283 (9%), Positives = 72/283 (25%), Gaps = 44/283 (15%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI--LHIDPNNHIGDLLKRQNTWYGKT 147
           D  G +   +    +  G    + IG  L D+        +  + +  +   +     +T
Sbjct: 371 DTQGIVISWNGGAERLFGYTREEAIGRPLVDLIIPEQFKDEEPDILRRVCAGETVSAFET 430

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                +G+ L V   ++  PI S +    G      V    +  +     + L+ +    
Sbjct: 431 LRHRKDGSELVVSATIS--PIRSPDGRVIGVSK--TVRDISLQKEAERRIRNLNSELEQQ 486

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK----------------------VSSLTE 245
              +    +     +      +    +   +                       V   T 
Sbjct: 487 VRQRTTELAEVNLLFRTVLSAAHEFCIIATDLNGVITFFNKGAVQMLGYSEDDVVGKATP 546

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFH----------------TINLNQYTKKQYF 289
              H +D L + ++ L      ++   + F                   + +++      
Sbjct: 547 AIFHDEDELASRRHELSDEYGEAIHGFDVFTYKAQRNQSEHREWTYWRKDGSRFPVNLVV 606

Query: 290 GTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP 332
             +++   +   YL      +      +         D+    
Sbjct: 607 TAMRDEQDQLLGYLGVATDITRQRQAQDALEKAKRQADEANEA 649



 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/156 (8%), Positives = 46/156 (29%), Gaps = 20/156 (12%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP------NNHIGDLLKRQNT 142
            D +G +   ++   + +G     ++G     +              ++  G+ +   + 
Sbjct: 516 TDLNGVITFFNKGAVQMLGYSEDDVVGKATPAIFHDEDELASRRHELSDEYGEAIHGFDV 575

Query: 143 WY----------GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192
           +            + T W  +G+    P++L    +     +  G+ G  +         
Sbjct: 576 FTYKAQRNQSEHREWTYWRKDGS--RFPVNLVVTAMRDEQDQLLGYLG--VATDITRQRQ 631

Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228
            +   ++  ++    +E K    +    +       
Sbjct: 632 AQDALEKAKRQADEANEAKTMFLANMSHEIRTPMNA 667


>gi|85860639|ref|YP_462841.1| sensor proteinluxq [Syntrophus aciditrophicus SB]
 gi|85723730|gb|ABC78673.1| sensor proteinLuxQ [Syntrophus aciditrophicus SB]
          Length = 955

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 124/634 (19%), Positives = 226/634 (35%), Gaps = 38/634 (5%)

Query: 220 EKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTIN 279
               +F        L           + A               SE  S   +      +
Sbjct: 48  RALRLFGFDDREELLHTPPSKIFPEAHSAVMKSDKAWSDQLRNASETGSAHFETLCQRRS 107

Query: 280 LNQYTKKQYFGTLQNNSKESFEYL--SHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VY 336
             Q+  +     L        +                 E        +D  P     + 
Sbjct: 108 GEQFAAEVLISALSYEGGRILQVSVCDISARRRTEEALLESHKQFKGIIDFFPDAVLAID 167

Query: 337 SHGNLFYANPSFLLLTKYKSVDDIE--------IAGGLSTLLDAPKL--SDNNAIKPVML 386
           + G +   N +   +T   + + I            G    + A  +     +  +    
Sbjct: 168 TEGKVIAWNRAMEQMTGAPAGEVIGRGNYEHGFQIYGTRRPILADLVLNPQEDIERAYPR 227

Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
           +      + +      +          +       +   + +       +  D R+ +R 
Sbjct: 228 FYRKGNYLISDTSSSKLSDTLGKDYFTSVAATPLYDDEGKIIGAIESIRDISDRRLAERA 287

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR------------ 494
           +     +   I++   D I  ++ EG +++ N A+ ++ G P E++L             
Sbjct: 288 LAESQRRFKDIIDFFPDAILAVDIEGRVVTWNHAMEQMTGIPAEEMLGKGNYEYALPFYG 347

Query: 495 --KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
             +P  + L       + H+   I     R   E            + L      L  S 
Sbjct: 348 TRRPILIDLAMRPQEEIEHHYVSIHREGNRLLGETYIANLH--GGNIFLSGTATALYDSK 405

Query: 553 CYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
              +    ++ DIS+ K  +  L  AK+ A+  +  KS FLA +SHE+RTPL AIIG+SE
Sbjct: 406 GRMIGAIESLRDISDRKATEVALQQAKEAADAANRSKSAFLANMSHELRTPLNAIIGYSE 465

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
           +   +     G   +I   + I  +G  +L ++ND+LD+SKIE+ K+ L+ E  S+ E +
Sbjct: 466 L-LQEEAEEAGVNHFISALDRIHSAGKHLLGLINDILDLSKIEASKIELYPETFSVSEMI 524

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
              + +      +   ++          + ADL  ++Q   N+LSNA  FT SG  I ++
Sbjct: 525 ESIVKIADPLVKKNGNILIVKGCETGGEMHADLTRLRQCLFNLLSNAAKFTTSG-VITLT 583

Query: 729 TTHT---SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
            + T     E +   + DTG+GMT  ++E+  + F Q  +S   +  GTGLGL + +   
Sbjct: 584 VSRTQEAEQEWMNFSLHDTGIGMTPQQMERLFQTFTQADSSTTRKFGGTGLGLTITRNFC 643

Query: 786 DANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819
               G   + S   KG+L  I  P    + P + 
Sbjct: 644 RLMGGDITVESEYGKGSLFTIRIPAVTAAGPAEA 677



 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/133 (15%), Positives = 53/133 (39%), Gaps = 7/133 (5%)

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRKPFTVFLEQNTPSVM 509
                 + E++ + + ++   GI    N    +LFG+   E++L  P +    +   +VM
Sbjct: 20  ESLFRELFESSGNALILL-ESGIFRHCNLRALRLFGFDDREELLHTPPSKIFPEAHSAVM 78

Query: 510 ---NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS--LTMHDISEW 564
                +  ++ +     +    TL   +  +  +  ++I  L +       +++ DIS  
Sbjct: 79  KSDKAWSDQLRNASETGSAHFETLCQRRSGEQFAAEVLISALSYEGGRILQVSVCDISAR 138

Query: 565 KQEKNKLSHAKKI 577
           ++ +  L  + K 
Sbjct: 139 RRTEEALLESHKQ 151



 Score = 58.1 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 31/276 (11%), Positives = 68/276 (24%), Gaps = 36/276 (13%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGM-----------RLCDVSDILHIDPNNHIGDL- 136
           ID  G +   +  + +  G  A ++IG                +   L ++P   I    
Sbjct: 166 IDTEGKVIAWNRAMEQMTGAPAGEVIGRGNYEHGFQIYGTRRPILADLVLNPQEDIERAY 225

Query: 137 ---LKRQNTWYGKTTLWPIEGTNLYVPID-LAALPIYSRNREFSGFRGFGIVHVNRVDND 192
               ++ N     T+   +  T        +AA P+Y    +  G      +        
Sbjct: 226 PRFYRKGNYLISDTSSSKLSDTLGKDYFTSVAATPLYDDEGKIIGA--IESIRDISDRRL 283

Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ---------SPPPHLRMKNKVSSL 243
                    ++F  + +           +  + +                L   N   +L
Sbjct: 284 AERALAESQRRFKDIIDFFPDAILAVDIEGRVVTWNHAMEQMTGIPAEEMLGKGNYEYAL 343

Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG---------TLQN 294
             Y   +  ++     P    E   +    + + +    Y    + G          L +
Sbjct: 344 PFYGTRRPILIDLAMRPQEEIEHHYVSIHREGNRLLGETYIANLHGGNIFLSGTATALYD 403

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330
           +       +      S     +       E  D   
Sbjct: 404 SKGRMIGAIESLRDISDRKATEVALQQAKEAADAAN 439



 Score = 46.2 bits (108), Expect = 0.022,   Method: Composition-based stats.
 Identities = 14/150 (9%), Positives = 36/150 (24%), Gaps = 15/150 (10%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN-HIGDLLKRQNTWYGKT 147
           +D  G +   +  + +  G  A +M+G    + +   +       I   ++ Q       
Sbjct: 309 VDIEGRVVTWNHAMEQMTGIPAEEMLGKGNYEYALPFYGTRRPILIDLAMRPQEEIEHHY 368

Query: 148 TLWPIEG------------TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA 195
                EG                + +   A  +Y       G      +           
Sbjct: 369 VSIHREGNRLLGETYIANLHGGNIFLSGTATALYDSKGRMIGA--IESLRDISDRKATEV 426

Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIF 225
             ++  +     +  K    +    +    
Sbjct: 427 ALQQAKEAADAANRSKSAFLANMSHELRTP 456


>gi|119773885|ref|YP_926625.1| signal transduction histidine kinase-like protein [Shewanella
           amazonensis SB2B]
 gi|119766385|gb|ABL98955.1| signal transduction histidine kinase-like protein [Shewanella
           amazonensis SB2B]
          Length = 1287

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 132/669 (19%), Positives = 248/669 (37%), Gaps = 42/669 (6%)

Query: 169 YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228
              + EF G RGFG +    V     AL   LD       + +     +     D+F  +
Sbjct: 101 RDYSHEFPGARGFGFIQYVPVS----ALDTFLDSSAMERPDGRFALRQLNPHDDDLFVIR 156

Query: 229 SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288
              P  R K  V       +++             +    +   +               
Sbjct: 157 FIEPEARNKQAVGLDIGSESNRRQAALRSARENSVTLTGPITLVQASQKSLQGFLILMPV 216

Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSF 348
           + T  + +  +    +           DE  N      +   +  +  + G+        
Sbjct: 217 YRTPDSETSSTTGMANLVGWSYAPILIDEVLNTISGLEEHLVLTIYDVTDGSAQQFFQRG 276

Query: 349 L---LLTKYKSVDDIEIAGGLSTLLDAP------KLSDNNAIKPVMLYRSDRTCIAASAR 399
                LT+++   DI + G    L  +P      +++       ++        IA    
Sbjct: 277 AHDVALTQHQVDADIGLFGRDWRLSLSPDPAFIQRMALPEPSSTLLDAWLISLLIAVLVY 336

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459
              + W R   +         A +      +  +E    +      ++E   +   +IL+
Sbjct: 337 SGQLMWMRRAVVLQHRRELASAEEKALLSAKAKLEQLVHER---TSQLEKMGVLQRTILD 393

Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN--------- 510
           A S  I   + EGII   N +  +L G+  ++++              V           
Sbjct: 394 AASYAIIATDTEGIITVFNPSAERLLGFTAKEMVGLQTPAIFHLEEEVVRRATQLSEELG 453

Query: 511 -------HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII--KKLPFSSCYSLTMHDI 561
                               T     +  +     + L +     +      Y    +D+
Sbjct: 454 TKIEPGFDAFVAKSRRGKEDTNNWTYVSKSGARITVKLSVTTLYGEDKDIMGYLGIAYDL 513

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           +E  + + +L+ A++ A + S  KSDFLA +SHEIRTP+ A++G  ++       P    
Sbjct: 514 TEQLKREQELADAREQALQASRAKSDFLANMSHEIRTPMNAVLGLLQMTLQTELPP---- 569

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
           R  +Y     ++   +L ++ND+LD SKIE+G++ L  +  SL + + +  S++     +
Sbjct: 570 RPRDYLEKTQQAAKSLLALLNDILDFSKIEAGRIELERQGFSLQQLLGDMGSILSSQVQQ 629

Query: 682 KRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNE--EV 737
           K I +    A ++P +++ D   ++QI LN+L+NAI FT  G  I  I      +    +
Sbjct: 630 KDIELVYQVAPSVPDQLIGDSLRLRQILLNVLTNAIKFTEKGDIITRIDADLGDDGTCHL 689

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
            + ++D+G+GMTN +     K F Q  +S   R  GTGLGL + + +V    G+  + S+
Sbjct: 690 HIEIQDSGIGMTNEQQAIIFKGFSQADSSISRRYGGTGLGLAITRELVHLMQGEIRVTSS 749

Query: 798 PAKGTLIEI 806
           P  G+   I
Sbjct: 750 PGVGSTFTI 758



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 29/251 (11%), Positives = 69/251 (27%), Gaps = 23/251 (9%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIG--------------MRLCDVSDILHIDPNNHIG 134
            D  G +   +    + +G  A +M+G               R   +S+ L         
Sbjct: 402 TDTEGIITVFNPSAERLLGFTAKEMVGLQTPAIFHLEEEVVRRATQLSEELGTKIEPGFD 461

Query: 135 DLLKRQNTWYGKTTLW-PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193
             + +       T  W  +  +   + + L+   +Y  +++  G+ G  I +        
Sbjct: 462 AFVAKSRRGKEDTNNWTYVSKSGARITVKLSVTTLYGEDKDIMGYLG--IAYDLTEQLKR 519

Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253
                   ++       K    +    +         P +  +     +L      +   
Sbjct: 520 EQELADAREQALQASRAKSDFLANMSHEIRT------PMNAVLGLLQMTLQTELPPRPRD 573

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
              +      S  + L +  DF  I   +   ++   +LQ    +    LS +       
Sbjct: 574 YLEKTQQAAKSLLALLNDILDFSKIEAGRIELERQGFSLQQLLGDMGSILSSQVQQKDIE 633

Query: 314 YFDEGENLTPE 324
              +     P+
Sbjct: 634 LVYQVAPSVPD 644


>gi|298241407|ref|ZP_06965214.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
            racemifer DSM 44963]
 gi|297554461|gb|EFH88325.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
            racemifer DSM 44963]
          Length = 1101

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 109/772 (14%), Positives = 236/772 (30%), Gaps = 48/772 (6%)

Query: 55   TDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI 114
            TD +++  +      S             +  W+    G  ++ ++           ++ 
Sbjct: 358  TDIDEQKRAEQRIKASRENLRVLAETVP-QLVWSTGPDGLTQDWNQRYADYFQATPEQLR 416

Query: 115  GMRLCDVSDILHIDPNNHIG-DLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNR 173
            G       D    D    +    L+    +           T  Y      A+P+     
Sbjct: 417  GYGWRQFLDPEEYDHVCTVRDRSLETGEPYA-IEYRLKEGKTGSYRWFLARAMPVRDDVG 475

Query: 174  EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKY--DIFSQQSPP 231
            +    + FG               K  +  +  L E         +     D F+Q+   
Sbjct: 476  QIV--KWFGTCTDIEDQKRAEQQLKTSEANWRVLAETVPQLVWTTRADGLSDYFNQRFCD 533

Query: 232  PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINL---NQYTKKQY 288
                   ++           +  +        +  +  P +  +                
Sbjct: 534  YTHATWEQLYGYGWSQFVHPEDYEHTLAARTHAFRTGTPHEVAYRFREGQTGRYRWFLAR 593

Query: 289  FGTLQNNSKESFEYLSHRNHPSLSAYFD----EGENLTPETVDKCPIPFFVYSHGNL-FY 343
               +++ + +  ++             +    E E       +  P   +      L  Y
Sbjct: 594  AMPVRDETGQIVKWFGTATDIDEQKRAEQKIKESEENLRVLAETVPQLVWSTGPDGLHEY 653

Query: 344  ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403
             N  +   T                L+         A+                 RL   
Sbjct: 654  TNQRWRDYTGLTPEQVQSNRWAHLQLIHPDDREGTRAL--WQHAHDTGAMYEREERLRNG 711

Query: 404  QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
            Q                 ++  + +   G   +  D +  +  +     +  +++ +   
Sbjct: 712  QT--GAYRWFLVRAIPVRDEAGQIVKWIGTGTDIEDQKRIEEALRQSQERASTLMNSN-- 767

Query: 464  GIAIIN-REG-IILSTNRAVSKLFGYPVEDILRKPFTVFL--EQNTPSVMNHYLTEILSL 519
             I   N  EG  I+  N    ++ GY  ED+                +       E+ + 
Sbjct: 768  -IIGTNIAEGEQIVDANDTFLRMTGYTREDLRAGRINWMRMTPPEFLARTQQAHEELATQ 826

Query: 520  DLRQTLEKITLGSTKEEKLLSLRI-IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578
                  EK  +   K+   L + +  +      S     + D S  K+ + +        
Sbjct: 827  QSMPPYEKEYMC--KDGSRLPVLVGRVVLEHHPSQAIGFVLDNSARKELEQR-------- 876

Query: 579  EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
                  K DF++  SHE+R PL A+   ++ +  +R     +       + ++     + 
Sbjct: 877  ------KDDFISMASHELRNPLAAVKMQTQ-LVRKRLERQSHHEAATALSRVEGPVKQLE 929

Query: 639  DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
             ++ +LLD+SKI++G++    E V LD  + E    +Q  +    I++R         ++
Sbjct: 930  RLIGELLDVSKIQAGRLEYVRETVDLDALLHEVADTMQQLSTTHTIVVR---GAAPRLLV 986

Query: 699  ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
             D   + Q+  N++SNAI ++P    + +  + +    V +RV D G+G+   + +K  +
Sbjct: 987  GDKDRLGQVFTNLISNAIKYSPGAETVEMDLSASEE-RVTVRVHDHGLGIPREQRDKIFE 1045

Query: 759  PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             F +    +Q    G G+GL +   +V  + G   + S   KG+   +  PL
Sbjct: 1046 RFYRATGPKQKAIPGLGMGLYIVTEIVKRHEGTITVDSEVGKGSTFTVTLPL 1097



 Score =  174 bits (441), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 43/511 (8%), Positives = 111/511 (21%), Gaps = 29/511 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQNTWY 144
            W     G     +       G  + +  G                 +    ++    + 
Sbjct: 261 VWMNRPDGSRDYCNRRWCDYTGMTSEQAQGDGWLQAIHPDDQQRILEMWQRAVQTCMPYE 320

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
                     +  Y      A+P           + FG               K   +  
Sbjct: 321 -VELRLRQGTSGEYRWFLAQAMPHKDDQGTI--LKWFGTNTDIDEQKRAEQRIKASRENL 377

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHL--RMKNKVSSLTEYYAHKDDVLK---TEKY 259
             L E                               ++           +      T + 
Sbjct: 378 RVLAETVPQLVWSTGPDGLTQDWNQRYADYFQATPEQLRGYGWRQFLDPEEYDHVCTVRD 437

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
             L + E    E         +          ++++  +  ++             ++  
Sbjct: 438 RSLETGEPYAIEYRLKEGKTGSYRWFLARAMPVRDDVGQIVKWFGTCTDIEDQKRAEQQL 497

Query: 320 NLTPE----TVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
             +        +  P   +      L  Y N  F   T + + + +   G  S  +    
Sbjct: 498 KTSEANWRVLAETVPQLVWTTRADGLSDYFNQRFCDYT-HATWEQLYGYGW-SQFVHPED 555

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
                A +           +A   R                      ++  + +   G  
Sbjct: 556 YEHTLAARTHAFRTGTPHEVAYRFREGQT----GRYRWFLARAMPVRDETGQIVKWFGTA 611

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
            +  + +  ++K++     L  + E     +     +G+   TN+      G   E +  
Sbjct: 612 TDIDEQKRAEQKIKESEENLRVLAETVPQLVWSTGPDGLHEYTNQRWRDYTGLTPEQVQS 671

Query: 495 KPFTV--FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE-EKLLSLRIIIKKLPFS 551
             +     +  +                     E+       +        +    +   
Sbjct: 672 NRWAHLQLIHPDDREGTRALWQHAHDTGA--MYEREERLRNGQTGAYRWFLVRAIPVRDE 729

Query: 552 SC----YSLTMHDISEWKQEKNKLSHAKKIA 578
           +     +  T  DI + K+ +  L  +++ A
Sbjct: 730 AGQIVKWIGTGTDIEDQKRIEEALRQSQERA 760



 Score =  123 bits (308), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 47/515 (9%), Positives = 124/515 (24%), Gaps = 38/515 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMR-LCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
           +D    +   +       G    ++ G         ++       +    + +       
Sbjct: 25  VDDTEAIVYANASAQTLTGTPREELCGTSLWSGAPHLVSPSLYQAVQKAKQTREP-SEVE 83

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
            + P      +  + ++  P              G+  + +   +P  L   L +     
Sbjct: 84  YVSP----ATHRWLHVSLSPT-DE----------GLALLFQEQLEPLPLQDALSRNEQMY 128

Query: 208 HEIKKGHSS----VEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
            ++ +  +     V  E   +   Q P     ++ +                      L 
Sbjct: 129 RDLLESFADGVTIVTPEGLVLDINQRPLTDAHLRREEVVGKPLTDLPAWSSDPVVQEHLR 188

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN----HPSLSAYFDEGE 319
           +  +     E         + +      +        +                     E
Sbjct: 189 AAIARAARGETVR-FEAKIHPRPDLSLDILMTITAHRDASQQVEYLICAGRDITERKHAE 247

Query: 320 NLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
           +     V   P   ++    G+  Y N  +   T   S    +  G L  +    +    
Sbjct: 248 DELRTLVAAIPQHVWMNRPDGSRDYCNRRWCDYTGMTSEQA-QGDGWLQAIHPDDQQRIL 306

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
              +     R+ +TC+     L   Q                 +     +   G   +  
Sbjct: 307 EMWQ-----RAVQTCMPYEVELRLRQGTSGEYRWFLAQAMPHKDDQGTILKWFGTNTDID 361

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
           + +  +++++     L  + E     +     +G+    N+  +  F    E +    + 
Sbjct: 362 EQKRAEQRIKASRENLRVLAETVPQLVWSTGPDGLTQDWNQRYADYFQATPEQLRGYGWR 421

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----Y 554
            FL+      +       L       +E       K             +         +
Sbjct: 422 QFLDPEEYDHVCTVRDRSLETGEPYAIEYRL-KEGKTGSYRWFLARAMPVRDDVGQIVKW 480

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
             T  DI + K+ + +L  ++      +      +
Sbjct: 481 FGTCTDIEDQKRAEQQLKTSEANWRVLAETVPQLV 515



 Score = 77.8 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 43/264 (16%), Positives = 93/264 (35%), Gaps = 22/264 (8%)

Query: 315 FDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
             + + + P + +  P  FFV      + YAN S   LT     +    +         P
Sbjct: 4   AKQNKRVAPASRETLPDAFFVVDDTEAIVYANASAQTLTGTPREELCGTSLWSGA----P 59

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
            L   +  + V   +  R           +       L ++  P ++            +
Sbjct: 60  HLVSPSLYQAVQKAKQTREPSEVE----YVSPATHRWLHVSLSPTDEGLAL--------L 107

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
             E ++    +  +         +LE+ +DG+ I+  EG++L  N+          E+++
Sbjct: 108 FQEQLEPLPLQDALSRNEQMYRDLLESFADGVTIVTPEGLVLDINQRPLTDAHLRREEVV 167

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLR-QTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
            KP T     ++  V+  +L   ++   R +T+        + +  L + + I     +S
Sbjct: 168 GKPLTDLPAWSSDPVVQEHLRAAIARAARGETVRFEAKIHPRPDLSLDILMTITAHRDAS 227

Query: 553 CYSLTM----HDISEWKQEKNKLS 572
                +     DI+E K  +++L 
Sbjct: 228 QQVEYLICAGRDITERKHAEDELR 251



 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/121 (11%), Positives = 38/121 (31%), Gaps = 7/121 (5%)

Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
           E   D   +++    I+  N +   L G P E++                +   + +   
Sbjct: 16  ETLPDAFFVVDDTEAIVYANASAQTLTGTPREELCGTSLWSGAPHLVSPSLYQAVQKAKQ 75

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578
                 +E ++  +    + L + +           +L   +  E    ++ LS  +++ 
Sbjct: 76  TREPSEVEYVSPATH---RWLHVSLSPT----DEGLALLFQEQLEPLPLQDALSRNEQMY 128

Query: 579 E 579
            
Sbjct: 129 R 129


>gi|86142642|ref|ZP_01061081.1| PAS domain protein [Leeuwenhoekiella blandensis MED217]
 gi|85830674|gb|EAQ49132.1| PAS domain protein [Leeuwenhoekiella blandensis MED217]
          Length = 1205

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 125/667 (18%), Positives = 251/667 (37%), Gaps = 49/667 (7%)

Query: 179 RGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKN 238
           R +G           +   ++ + +F+ + E       +   + ++    S    +   +
Sbjct: 260 RVYGAFQDISNRKKHQLAREKAENRFTKVFENSSIGIVLVNHQSNLVMANSSARRIFGLD 319

Query: 239 KVSSLTEYYAHKDDVLKTEKYPLLTSEESSL--------PEQEDFHTINLNQYTKKQYFG 290
            +S          DVL  E  P      ++L          + + +  +           
Sbjct: 320 HLSEEEVLEYTIKDVLLPEYIPEAIENRTALMSGDIDHYQMEVECYHGSGKVIWCSFSCS 379

Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGE----NLTPETVDKCPIPF-FVYSHGNLFYAN 345
            +     +S   ++     +     +       +      +  P     V  HG     N
Sbjct: 380 MITETEAQSKLVITQVEDITKRKSLERRALENASKFKRVFEYSPNGMALVDLHGRWRSVN 439

Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405
            +   +  Y   + +++     +L +     D      +      +           +  
Sbjct: 440 HNLAQMIGYSREELLKM-----SLREITHPEDRENDAQLFSKIITKELTNYQVEKRYLHK 494

Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465
           +               ++        G   +  D    K+ +E  + ++  IL++T+  I
Sbjct: 495 DGSLVHCF-LTVSGLFDERGNVRSLIGQVVDMTDEINAKKALESSLNEMRVILDSTTQVI 553

Query: 466 AI-INREGIILSTNRAVSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEILSL--- 519
            +  + + II   N+    L GY  E+++   KP    +++   +       E       
Sbjct: 554 IVETDLDHIIRKFNKGAENLLGYTAEEVIGNQKPAIFHVDEEVENYALKLKEEYGEQVDK 613

Query: 520 --------DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQE 567
                   +  +   +      K+     +++++  +         Y     DIS  K  
Sbjct: 614 HDVFTYKINRGELETRDWTYVRKDGTTFPVQLVVTAIKDDEGKTTGYLGVSADISALKAM 673

Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
           +  L  AK+ AE  + +KS+FLA +SHEIRTPL  +IGF++++         N    +Y 
Sbjct: 674 EYSLIKAKQKAEAANKYKSEFLANMSHEIRTPLNGVIGFADILMKSPL----NENQQKYM 729

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
             I  S   +LD++ND+LD SKIE+GK++L  E V++ E    ++ +++  A +K I + 
Sbjct: 730 ETIYASAISLLDLINDILDFSKIEAGKLSLSEERVNITELCGRSVEMIKHEAYQKNIEVL 789

Query: 688 TSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE------EVILR 740
            +    I + I+AD   ++QI +N+LSNA+ FT  G +I +     ++       +    
Sbjct: 790 LNIPQKIDQYIIADGLRLRQILINLLSNAVKFTHDG-EIELKVEEQNSALHPNKKQFTFS 848

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           +RDTG+G++   L++  K F Q   S   +  GTGLGL ++  ++     K  + ST   
Sbjct: 849 LRDTGIGISEQNLQEIFKAFNQGDASTTRKYGGTGLGLTISNRLLQLMESKLEVRSTLGV 908

Query: 801 GTLIEII 807
           GT     
Sbjct: 909 GTTFYFT 915



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 46/378 (12%), Positives = 115/378 (30%), Gaps = 69/378 (18%)

Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450
              ++       I  + +          +   +    +   G   +  + + ++   E  
Sbjct: 224 EEGVSFDDEFIIITADGKEKWV--RSMGKAEFENGVCIRVYGAFQDISNRKKHQLAREKA 281

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG---YPVEDILRKPFTVFLEQNTPS 507
             +   + E +S GI ++N +  ++  N +  ++FG      E++L       L      
Sbjct: 282 ENRFTKVFENSSIGIVLVNHQSNLVMANSSARRIFGLDHLSEEEVLEYTIKDVLLPEYIP 341

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISE 563
                 T ++S D+    +          K++        +  +          + DI++
Sbjct: 342 EAIENRTALMSGDIDH-YQMEVECYHGSGKVIWCSFSCSMITETEAQSKLVITQVEDITK 400

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDF------LARVSHEI-------RTPLTAIIGFS-EV 609
            K  +      ++  E  S  K  F      +A V  ++          L  +IG+S E 
Sbjct: 401 RKSLE------RRALENASKFKRVFEYSPNGMALV--DLHGRWRSVNHNLAQMIGYSREE 452

Query: 610 IKNQRFGPLGNPRYIE-----YANYIDRSG-------NLVLD---IVNDLLDISKIESGK 654
           +       + +P   E     ++  I +           +     +V+  L +S      
Sbjct: 453 LLKMSLREITHPEDRENDAQLFSKIITKELTNYQVEKRYLHKDGSLVHCFLTVS------ 506

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRIL-------IRTSFANNIPRILADLRSVKQI 707
             L  E  ++   + + + +      +K +        +       +  +  DL  + + 
Sbjct: 507 -GLFDERGNVRSLIGQVVDMTDEINAKKALESSLNEMRVILDSTTQVIIVETDLDHIIRK 565

Query: 708 AL----NILSNAIHFTPS 721
                 N+L     +T  
Sbjct: 566 FNKGAENLLG----YTAE 579



 Score = 73.5 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/264 (9%), Positives = 80/264 (30%), Gaps = 29/264 (10%)

Query: 74  FVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI 133
           F + P    +     +D HG  + ++  L + IG    +++ M L +++     + +  +
Sbjct: 419 FEYSPNGMAL-----VDLHGRWRSVNHNLAQMIGYSREELLKMSLREITHPEDRENDAQL 473

Query: 134 GDLLKRQNT--WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN 191
              +  +    +  +      +G+ ++  + ++ L  +          G  +V +    N
Sbjct: 474 FSKIITKELTNYQVEKRYLHKDGSLVHCFLTVSGL--FDERGNVRSLIG-QVVDMTDEIN 530

Query: 192 DPRALGKRL---DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA 248
             +AL   L           ++    + ++                  +  + +      
Sbjct: 531 AKKALESSLNEMRVILDSTTQVIIVETDLDHIIRKFNKGAENLLGYTAEEVIGNQKPAIF 590

Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDF----------------HTINLNQYTKKQYFGTL 292
           H D+ ++     L       + + + F                   +   +  +     +
Sbjct: 591 HVDEEVENYALKLKEEYGEQVDKHDVFTYKINRGELETRDWTYVRKDGTTFPVQLVVTAI 650

Query: 293 QNNSKESFEYLSHRNHPSLSAYFD 316
           +++  ++  YL      S     +
Sbjct: 651 KDDEGKTTGYLGVSADISALKAME 674



 Score = 46.2 bits (108), Expect = 0.026,   Method: Composition-based stats.
 Identities = 17/154 (11%), Positives = 44/154 (28%), Gaps = 20/154 (12%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH----------------IDPNN 131
             D    +++ ++     +G  A ++IG +   +  +                  +D ++
Sbjct: 556 ETDLDHIIRKFNKGAENLLGYTAEEVIGNQKPAIFHVDEEVENYALKLKEEYGEQVDKHD 615

Query: 132 HIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN 191
                + R        T    +GT    P+ L    I     + +G+ G  +        
Sbjct: 616 VFTYKINRGELETRDWTYVRKDGTTF--PVQLVVTAIKDDEGKTTGYLG--VSADISALK 671

Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF 225
                  +  +K    ++ K    +    +    
Sbjct: 672 AMEYSLIKAKQKAEAANKYKSEFLANMSHEIRTP 705


>gi|307822230|ref|ZP_07652462.1| PAS/PAC sensor hybrid histidine kinase [Methylobacter tundripaludum
            SV96]
 gi|307736796|gb|EFO07641.1| PAS/PAC sensor hybrid histidine kinase [Methylobacter tundripaludum
            SV96]
          Length = 1268

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 124/754 (16%), Positives = 266/754 (35%), Gaps = 56/754 (7%)

Query: 92   HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY-GKTTLW 150
             G + E +      +G     ++   +         D    + + L + +    G+  + 
Sbjct: 369  QGQILEANITAATLLGLTKG-LVKPPIFRFIFKEDADIYYRLHERLTKTDELQTGELRMV 427

Query: 151  PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
              +GT     + L+       +          ++              +     + +   
Sbjct: 428  KADGTPA--WVQLSISAAQDNDTPVIRI----VMMDISERKRTEEALFKASALQNAIFNS 481

Query: 211  KKGHSSVEKEKYDIF---SQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
                S     K  I                + ++ +T         +      L     +
Sbjct: 482  ANFSSIATDAKGVIQIFNVGAEHMLGYTAADVMNKITPAEISDPQEVIARAKALSVELGT 541

Query: 268  SLPE-----------------QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310
             +                   +  +   + +++        L++       YL       
Sbjct: 542  PIEPGFEALVFKASRGIEDIYELTYIRKDGSRFPAVVSVTALRDAQDTIIGYLLIGTEIK 601

Query: 311  LSAYFDEGENLTPETVDKCP-IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
              A             +          + G +   N     +  Y + + +         
Sbjct: 602  AGALQ-------SAIFNSANFSSIATDAKGVIQIFNVGAERMLGYTAAEVMNKITPAEIS 654

Query: 370  LDAPKLSDNNA----------IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
                 ++   A               L       I     L  I+ +     A+      
Sbjct: 655  DPQEVVARAKALSVELGTPIEPGFEALVFKASRGIEDIYELTYIRKDGSRFPAV-VSVTA 713

Query: 420  KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTN 478
              +     +    I  ++   +  + ++         ++E+ +D  I +++ EG ++S N
Sbjct: 714  LRDAQNAIIGYLLIGTDNSARKQVEEQLRWTEESFRLMVESVTDYAIVMLDPEGRVVSWN 773

Query: 479  RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
                ++ GY  E+I+ + F+ F              ++  +  R   E       K    
Sbjct: 774  SGAQRIKGYSAEEIVGQHFSRFYPLEDIERGTPQ-RDLDIVTARGRFEDEGWRVRKNGST 832

Query: 539  LSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
                ++   +         Y+    D++E K+   +L  AK +AEK +  KSDFL+ +SH
Sbjct: 833  FWANVVYTAIRDQSGNLRGYAKLTRDLTERKRLDQELERAKSVAEKANLAKSDFLSSMSH 892

Query: 595  EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
            E+RTPL AI+GF+++++     P    +     + I ++G  +L+++N++LD++ IESGK
Sbjct: 893  ELRTPLNAILGFAQLLEAGSPPPTDAQKIR--LHQIIKAGWYLLELINEILDLALIESGK 950

Query: 655  MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714
            ++L  EPV+L + + E  ++++  A ++ I +     +      AD   VKQ+ +N+LSN
Sbjct: 951  LSLSREPVALIDVIIECQAMIEPQAQQRDIKLTFIPFDETWFASADRTRVKQVLINLLSN 1010

Query: 715  AIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
            AI +    G + +    ++ E + + V+DTG G+   +L +  +PF ++      + EGT
Sbjct: 1011 AIKYNREHGTVEVKCIESTPERLRISVKDTGEGLAPEKLAQLFQPFNRLGQESSGK-EGT 1069

Query: 775  GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            G+GL + K +V+   G   + ST   G+   I  
Sbjct: 1070 GIGLVVTKQLVELMGGAIGVESTVGVGSEFWIDL 1103



 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 57/565 (10%), Positives = 136/565 (24%), Gaps = 77/565 (13%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH-IDPNNHIGDLLKRQNT----- 142
            DA   +  ++    +  G       G  + ++  I++          +++         
Sbjct: 214 TDAEARITLMNPLAEQLTGWTQVSAAGRPVDEIFHIVNKATRQPAAIPVMETLAHGTIQG 273

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNR----VDNDPRALGK 198
               T L   +G+     I  +  PI  R+ +  G     +         V +  +    
Sbjct: 274 LANHTVLIARDGS--ECDIADSCAPIRDRDAQMIGA--VLVFRDVSGEYAVQHTLQVQQV 329

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH--------- 249
            L+ +   L + +   S +    +D+++          +          A          
Sbjct: 330 ELELQNEELRDSQMALSILRTRYFDLYNLAPMGYCTLSEQGQILEANITAATLLGLTKGL 389

Query: 250 -----------KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE 298
                      +D  +    +  LT  +     +      +      +      Q+N   
Sbjct: 390 VKPPIFRFIFKEDADIYYRLHERLTKTDELQTGELRMVKADGTPAWVQLSISAAQDNDTP 449

Query: 299 --SFEYLSHRNHPSLSAYFDEGENLTPETVDKCP-IPFFVYSHGNLFYANPSFLLLTKYK 355
                 +             +   L     +          + G +   N     +  Y 
Sbjct: 450 VIRIVMMDISERKRTEEALFKASALQNAIFNSANFSSIATDAKGVIQIFNVGAEHMLGYT 509

Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNA----------IKPVMLYRSDRTCIAASARLHTIQW 405
           + D +              ++   A               L       I     L  I+ 
Sbjct: 510 AADVMNKITPAEISDPQEVIARAKALSVELGTPIEPGFEALVFKASRGIEDIYELTYIRK 569

Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465
           +     A+        +     +    I  E     +             +I  + +   
Sbjct: 570 DGSRFPAV-VSVTALRDAQDTIIGYLLIGTEIKAGALQ-----------SAIFNSANFSS 617

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRK-PFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
              + +G+I   N    ++ GY   +++ K       +          L+  L   +   
Sbjct: 618 IATDAKGVIQIFNVGAERMLGYTAAEVMNKITPAEISDPQEVVARAKALSVELGTPIEPG 677

Query: 525 LE-------------KITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQE 567
            E                    K+       + +  L  +      Y L   D S  KQ 
Sbjct: 678 FEALVFKASRGIEDIYELTYIRKDGSRFPAVVSVTALRDAQNAIIGYLLIGTDNSARKQV 737

Query: 568 KNKLSHAKKIAEKESSHKSDFLARV 592
           + +L   ++         +D+   +
Sbjct: 738 EEQLRWTEESFRLMVESVTDYAIVM 762



 Score = 97.4 bits (241), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 36/328 (10%), Positives = 75/328 (22%), Gaps = 39/328 (11%)

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSV 357
                          A    G                   +G +   N     +  Y SV
Sbjct: 14  APGSVEGITEVRRQKALLKTGALQNAILNSANFSSIATDENGVIQIFNVGAERMLGYMSV 73

Query: 358 DDIEIAGGLSTLLDAPKLSDNNA----------IKPVMLYRSDRTCIAASARLHTIQWNR 407
           D +              ++   A               L       I     L  I+ + 
Sbjct: 74  DVLNKITPADISDPQEVIARAEALSVELGTPITPGFEALVFKASRGIEDIYELTYIRKDG 133

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK--------------------- 446
               A+        +     +    I  ++   ++ + +                     
Sbjct: 134 SRFPAI-VSVTALRDAQGGIIGYLLIGTDNTARKLVEAERQRLLEIQEETNKQQQQQTNA 192

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--- 503
           ++    +L   L +  D +   + E  I   N    +L G+       +P          
Sbjct: 193 LQASEERLAVTLNSIGDAVIATDAEARITLMNPLAEQLTGWTQVSAAGRPVDEIFHIVNK 252

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMH 559
            T       + E L+    Q L   T+   ++     +      +           L   
Sbjct: 253 ATRQPAAIPVMETLAHGTIQGLANHTVLIARDGSECDIADSCAPIRDRDAQMIGAVLVFR 312

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSD 587
           D+S     ++ L   +   E ++    D
Sbjct: 313 DVSGEYAVQHTLQVQQVELELQNEELRD 340



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 15/161 (9%), Positives = 41/161 (25%), Gaps = 6/161 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL--LKRQNTWYGK 146
           +D  G +   +    +  G  A +++G        +  I+      DL  +  +  +  +
Sbjct: 763 LDPEGRVVSWNSGAQRIKGYSAEEIVGQHFSRFYPLEDIERGTPQRDLDIVTARGRFEDE 822

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                  G+  +  +      I  ++    G+    +              +R       
Sbjct: 823 GWRVRKNGSTFWANVV--YTAIRDQSGNLRGYAK--LTRDLTERKRLDQELERAKSVAEK 878

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247
            +  K    S    +              ++      T+  
Sbjct: 879 ANLAKSDFLSSMSHELRTPLNAILGFAQLLEAGSPPPTDAQ 919


>gi|189423669|ref|YP_001950846.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189419928|gb|ACD94326.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 957

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 127/544 (23%), Positives = 223/544 (40%), Gaps = 26/544 (4%)

Query: 278 INLNQYTKKQYFGTLQNNSKESFEYLS--HRNHPSLSAYFDEGENLTPETVDKCPIPFFV 335
           +  +   +      L    +E+ + L      H        + E      ++  P   ++
Sbjct: 275 LAGSLLWRFLGIRRLNRQLQEANQRLETEISEHNQAVRLLKKNEQFQKTLIETLPDLVWL 334

Query: 336 YSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394
                +    NP F  L   K  + I             +L+D           + +  +
Sbjct: 335 KDPDGVYLGCNPRFEELYGAKQSEIIGK---TDYDFVERELADFFRENDRKAAAAGKPTV 391

Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
                  T             I     +     +   G+  +  +       + +   + 
Sbjct: 392 NEEWLTFT---ESGYRGLFETIKTPMFDTDGTLLGVLGVARDISERARAYELLRLSEEKF 448

Query: 455 CSILEATSDGIAIINR--EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
            +    + D +  +NR  +G  L  N   + + GY  E++L K          P+     
Sbjct: 449 ATAFRVSPDSV-NLNRLSDGTYLEVNEGFTAIAGYQPEEVLGKSSLELNIWANPADRLQL 507

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLS--LRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570
           + E+                 K+  L++  +   I  +    C      DISE K+ + +
Sbjct: 508 VQELQQHGF--VRNLEAQFRCKDGSLITGQMSARIITVNGEQCLLNITRDISERKRYEEE 565

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           L  A++ AE  +  KS+FLA +SHEIRTP+  +IG  ++++  R     N    EY   +
Sbjct: 566 LQQARQAAEAANRAKSEFLANMSHEIRTPMNGVIGMVQLLQFTRL----NSEQQEYLQCL 621

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
           + S   +L ++ND+LD+SKIE+GK++L +   SL  ++ E ++      ++KR+ + TS 
Sbjct: 622 ETSAQNLLSLLNDILDLSKIEAGKISLEYADFSLRHSIQEVVTTQISQIHQKRLKLTTSL 681

Query: 691 ANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTG 745
           A++IP IL  D   +KQI LN+L NAI FT +G  I I+   T  +     + L V DTG
Sbjct: 682 ADDIPEILHGDPLRLKQILLNLLGNAIKFTAAGS-ITIAARITDQQNGTLTICLSVSDTG 740

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +GMT   L++   PF Q  NS   R  GTGLGL + + + +   G+ +  S+   G+   
Sbjct: 741 IGMTPEALQRIFAPFEQADNSTTRRFGGTGLGLTICRRLAELMGGRIWAESSDGHGSSFF 800

Query: 806 IIFP 809
           +  P
Sbjct: 801 VELP 804



 Score = 61.2 bits (147), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 17/137 (12%), Positives = 38/137 (27%), Gaps = 6/137 (4%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID--PNNHIGDLLKRQNT 142
             W  D  G     +    +  G    ++IG    D  +    D    N        + T
Sbjct: 331 LVWLKDPDGVYLGCNPRFEELYGAKQSEIIGKTDYDFVERELADFFRENDRKAAAAGKPT 390

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
              +   +   G       +    P++  +    G  G  +            L +  ++
Sbjct: 391 VNEEWLTFTESG--YRGLFETIKTPMFDTDGTLLGVLG--VARDISERARAYELLRLSEE 446

Query: 203 KFSHLHEIKKGHSSVEK 219
           KF+    +     ++ +
Sbjct: 447 KFATAFRVSPDSVNLNR 463


>gi|254411326|ref|ZP_05025103.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196181827|gb|EDX76814.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 1210

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 133/749 (17%), Positives = 251/749 (33%), Gaps = 104/749 (13%)

Query: 135 DLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR 194
             +     + G   ++  E    +  + L+   + +   +  G      +          
Sbjct: 253 ATILNGEIFQGIEVVFGREDGQQFHLL-LSGRALLNSKNQIQGC--VVTLTNITARKQSE 309

Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP------------PPHLRMKNKVSS 242
              +   ++F            +  E  ++                  P       K   
Sbjct: 310 QALQESQERFRRAVLYSPIPIMLHAEDGEVLQINQAWTELTGYTHQDIPTIADWTQKAYG 369

Query: 243 LTEYYAHKD-DVLKTEKYP---------------------------LLTSEESSLPEQED 274
             +    ++ D L     P                           L       +    D
Sbjct: 370 TRQGLVQENIDQLYHLDQPIGEGEYTIITRNGSTRIWDFSSAPLGKLSDGRRMVISTALD 429

Query: 275 FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS--LSAYFDEGENLTPETVDKCPIP 332
                  +   +Q   TL+   +E  + L                 +      ++     
Sbjct: 430 VTLRKQAELELQQANATLEVRVEERTKALQQELQTRHQAEQELRASQARFAGILEIASDG 489

Query: 333 FF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR 391
              V ++  +   N     +  Y+  + +        LL   + +  +         S  
Sbjct: 490 IISVDANQRIILFNQGAEKMFGYRVSEVLGQPLD---LLLPNRYTIAHHQHIKTFSHSQG 546

Query: 392 TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV 451
                  R   I   R++                + +       +  + +  + K++   
Sbjct: 547 KARRMGER-QAIFGRRKDGTEFPAEASISKLTLGDQVVFTAFVQDITERKQFEEKLQQSE 605

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
            +L +I+ AT DGI I++R+G +   N A ++LF    + +L   + + L          
Sbjct: 606 TRLKTIITATCDGIMIVDRQGQVCFANPAAAQLFDMTPDALLNYQWGMPL---------- 655

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571
                      +T E   + S+   +   ++    +    S Y + + DI++ KQ    L
Sbjct: 656 ----------GETTEIELMQSSGIGRTAEMKATPIQWFSKSAYVIALRDITKRKQADLSL 705

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
             AK  AE  +  KS FLA +SHE+RTPL  I+GF++V+      P   P   E  + I+
Sbjct: 706 QQAKADAEAANQAKSMFLANMSHELRTPLNIILGFTQVMSRD---PAITPEEQENLDIIN 762

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
           +SGN +L ++ND+LD+SKIE+G +++      L   +     + Q  A  K + +  + A
Sbjct: 763 KSGNHLLSLINDVLDLSKIEAGCISVEESRFDLIALMRSLQEMFQHKARAKGLQLHLNIA 822

Query: 692 NNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-----TSNE---------- 735
            ++P  I AD   ++Q+ +N+LSNAI FT +G  I +           +           
Sbjct: 823 ADVPHYIQADSNKLRQVLINLLSNAIKFTQNGS-INLRVALLKAEGNDHGSDAEDMITPP 881

Query: 736 -------------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
                         +   V DTGVG+   EL      F Q    +    EGTGLGL +++
Sbjct: 882 SSQTRHGTSLQASHLHFEVSDTGVGIAPTELGSIFDAFIQTHAGKV-ANEGTGLGLAISR 940

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
             V    G   + S   +G+      P++
Sbjct: 941 KFVQLMGGDIQVSSQLNQGSTFSFEIPVH 969



 Score =  146 bits (368), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 78/543 (14%), Positives = 154/543 (28%), Gaps = 63/543 (11%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151
            G L   +  L   +      +IG       + + +        LL++    Y     + 
Sbjct: 75  DGMLLYCNRRLADLLQRNLETVIGSNFKQYLNPVEV---PFFQSLLQKDKAGYSHREFYL 131

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
           I      +P++L+  P+     + +      IV     +   +      +K    + E  
Sbjct: 132 IASDQTEIPVELSVSPLMMEGVKVN----CLIVTDLTENK-RQKKIVAAEKLARSIFEQV 186

Query: 212 KGHSSVEKEKYDIFSQQSPP-------PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
                V  ++  I              P L+  +++  L    +   +   T   P  TS
Sbjct: 187 ADAIVVCDQRGTIIRTSMATQELCGQNPILQPFDQIFPLMFSSSTIREDNHTISSPSPTS 246

Query: 265 EES-----------SLPEQEDFHTINLNQYTKKQYFGTLQNN----SKESFEYLSHRNHP 309
                             +  F   +  Q+        L N+            +     
Sbjct: 247 GHPFSIATILNGEIFQGIEVVFGREDGQQFHLLLSGRALLNSKNQIQGCVVTLTNITARK 306

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
                  E +      V   PIP  ++   G +   N ++  LT Y   D   IA     
Sbjct: 307 QSEQALQESQERFRRAVLYSPIPIMLHAEDGEVLQINQAWTELTGYTHQDIPTIADWTQK 366

Query: 369 LLDAPK------------LSDNNAIKPVMLYRSDRTCIAASARLHTIQW--NRENSLAMT 414
                +            L          +   + +          +    +    +  T
Sbjct: 367 AYGTRQGLVQENIDQLYHLDQPIGEGEYTIITRNGSTRIWDFSSAPLGKLSDGRRMVIST 426

Query: 415 FIPFEKANQFPENMPQN-------------GIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
            +      Q    + Q               ++ E       ++++     +   ILE  
Sbjct: 427 ALDVTLRKQAELELQQANATLEVRVEERTKALQQELQTRHQAEQELRASQARFAGILEIA 486

Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI--LSL 519
           SDGI  ++    I+  N+   K+FGY V ++L +P  + L        + ++        
Sbjct: 487 SDGIISVDANQRIILFNQGAEKMFGYRVSEVLGQPLDLLLPNRYTIAHHQHIKTFSHSQG 546

Query: 520 DLRQTLEKI-TLGSTKEEKLLSLRIIIKKLPFSSCYS--LTMHDISEWKQEKNKLSHAKK 576
             R+  E+    G  K+         I KL           + DI+E KQ + KL  ++ 
Sbjct: 547 KARRMGERQAIFGRRKDGTEFPAEASISKLTLGDQVVFTAFVQDITERKQFEEKLQQSET 606

Query: 577 IAE 579
             +
Sbjct: 607 RLK 609



 Score = 77.8 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 32/288 (11%), Positives = 78/288 (27%), Gaps = 18/288 (6%)

Query: 317 EGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
             E L     ++      V    G +   + +   L        ++    +  L+ +   
Sbjct: 174 AAEKLARSIFEQVADAIVVCDQRGTIIRTSMATQELCGQNP--ILQPFDQIFPLMFSSST 231

Query: 376 SDNNAIKPVMLYRSDRTCIA---------ASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
              +         +     +                          +        N   +
Sbjct: 232 IREDNHTISSPSPTSGHPFSIATILNGEIFQGIEVVFGREDGQQFHLLLSGRALLNSKNQ 291

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
                         + +++ ++    +    +  +   I +   +G +L  N+A ++L G
Sbjct: 292 IQGCVVTLTNITARKQSEQALQESQERFRRAVLYSPIPIMLHAEDGEVLQINQAWTELTG 351

Query: 487 YPVEDI-LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL---R 542
           Y  +DI     +T         ++   + ++  LD     E      T+           
Sbjct: 352 YTHQDIPTIADWTQKAYGTRQGLVQENIDQLYHLDQP-IGEGEYTIITRNGSTRIWDFSS 410

Query: 543 IIIKKLPFSSCYSL-TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
             + KL       + T  D++  KQ + +L  A    E     ++  L
Sbjct: 411 APLGKLSDGRRMVISTALDVTLRKQAELELQQANATLEVRVEERTKAL 458



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 43/346 (12%), Positives = 99/346 (28%), Gaps = 53/346 (15%)

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
           +E++    +++   +       ++    ++    ++            +    +      
Sbjct: 2   AEKTREELEQELQDLRDRLSVAEETLQAIRQGEVDALVVSGPAGDQIFTLQSADEP--YR 59

Query: 324 ETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEI-----AGGLSTLLDAPKLSD 377
             V++       V S G L Y N     L +      I          +        L  
Sbjct: 60  LFVEQMQEGAATVTSDGMLLYCNRRLADLLQRNLETVIGSNFKQYLNPVEVPFFQSLLQK 119

Query: 378 NNAI---KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
           + A    +   L  SD+T I     +  +         +                   I 
Sbjct: 120 DKAGYSHREFYLIASDQTEIPVELSVSPLMMEGVKVNCL-------------------IV 160

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
            +  + +  K+ +  E     SI E  +D I + ++ G I+ T+ A  +L G      + 
Sbjct: 161 TDLTENKRQKKIVAAEK-LARSIFEQVADAIVVCDQRGTIIRTSMATQELCGQNP---IL 216

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE---------------KITLGSTKEEKLL 539
           +PF         S         +S     +                    +   ++ +  
Sbjct: 217 QPFDQIFPLMFSSSTIREDNHTISSPSPTSGHPFSIATILNGEIFQGIEVVFGREDGQQF 276

Query: 540 SLRIIIKKLPFS----SCYSLTMHDISEWKQEKNKLSHAKKIAEKE 581
            L +  + L  S        +T+ +I+  KQ +  L  +++   + 
Sbjct: 277 HLLLSGRALLNSKNQIQGCVVTLTNITARKQSEQALQESQERFRRA 322



 Score = 39.2 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 24/247 (9%), Positives = 74/247 (29%), Gaps = 18/247 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL------KRQNT 142
           +DA+  +   ++   K  G    +++G  L  +    +   ++             R+  
Sbjct: 493 VDANQRIILFNQGAEKMFGYRVSEVLGQPLDLLLPNRYTIAHHQHIKTFSHSQGKARRMG 552

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
                     +GT       ++ L +  +      F  F  V             ++ + 
Sbjct: 553 ERQAIFGRRKDGTEFPAEASISKLTLGDQ----VVFTAF--VQDITERKQFEEKLQQSET 606

Query: 203 KFSHLHEIK-KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
           +   +      G   V+++    F+  +      M        ++     +  + E    
Sbjct: 607 RLKTIITATCDGIMIVDRQGQVCFANPAAAQLFDMTPDALLNYQWGMPLGETTEIELMQS 666

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
                ++     +     +  ++K  Y   L++ +K     LS +   + +   ++ +++
Sbjct: 667 SGIGRTA-----EMKATPIQWFSKSAYVIALRDITKRKQADLSLQQAKADAEAANQAKSM 721

Query: 322 TPETVDK 328
               +  
Sbjct: 722 FLANMSH 728


>gi|149189097|ref|ZP_01867385.1| RscS; sensor kinase protein [Vibrio shilonii AK1]
 gi|148837060|gb|EDL54009.1| RscS; sensor kinase protein [Vibrio shilonii AK1]
          Length = 792

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 106/409 (25%), Positives = 196/409 (47%), Gaps = 16/409 (3%)

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR-KMEIEVMQLCSILEATSDGIAII 468
            ++   + F           +     + +  +  +  + E E   L ++++A  D + I 
Sbjct: 244 GVSFVLVLFAGNKVLVNPHRELETSQKQLAQKNAELMERERESKLLATVVKAARDAVVIT 303

Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN-TPSVMNHYLTEILSLDLRQTLEK 527
           +++G I   NRA  ++ GY +E +  K    FL+   T       + + L+  L   ++ 
Sbjct: 304 DQKGTIEWVNRAFEEMTGYALESVQGKKPGHFLQGEKTEESTRQRIAKSLAQGLP--IKA 361

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
             L    + +   + I I  +   +     +     D++E+K+ +NKL++  + A   + 
Sbjct: 362 EILNYDSQGREYWVDIDITPISDENGNLDRFIAIERDVTEYKRLENKLTNTARDANAANE 421

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
            KS FLA +SHEIRTP+  ++G +++++ +    + +P + E    I  SGN ++ I+ND
Sbjct: 422 AKSAFLATMSHEIRTPMNGVLGLTQILEKE----ITDPNHREVLQLILSSGNHLVSILND 477

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP--RILADL 701
           +LDISKIE+  + L   P  + E +S   +  Q   +EK +L      N  P  + + D 
Sbjct: 478 ILDISKIENEALTLEHSPFKMIEILSPVKNTYQSLCSEKGLLFEV-IDNTPPYTQFIGDE 536

Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761
             ++QI LN++ NA+ FT  G  I+IS            V+DTG+G+T   L+   + F 
Sbjct: 537 VRLRQILLNLVGNALKFTQKGS-IVISVEVNVGGMCRFEVKDTGIGITPDRLDSVFEKFE 595

Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           Q   S   +  GTGLGL + K++V+   G+  + S   +G+   ++ PL
Sbjct: 596 QAEASTTRQFGGTGLGLSIVKSLVELMGGEILVDSKVGRGSTFTVLLPL 644



 Score = 58.1 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 24/190 (12%), Positives = 53/190 (27%), Gaps = 8/190 (4%)

Query: 40  KKENPCHDSFEQSNFTDQNQESVSNTNYLDSE-NTFVFDPIPRTVR-FTWNIDAHGYLKE 97
              N    +  +   T Q Q +  N   ++ E  + +   + +  R      D  G ++ 
Sbjct: 252 FAGNKVLVNPHRELETSQKQLAQKNAELMERERESKLLATVVKAARDAVVITDQKGTIEW 311

Query: 98  ISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN--HIGDLLKRQNTWYGKTTLWPIEGT 155
           ++    +  G     + G +          + +    I   L +      +   +  +G 
Sbjct: 312 VNRAFEEMTGYALESVQGKKPGHFLQGEKTEESTRQRIAKSLAQGLPIKAEILNYDSQGR 371

Query: 156 NLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHS 215
             +V ID+   PI   N      R   I                  +  +  +E K    
Sbjct: 372 EYWVDIDI--TPISDENGNLD--RFIAIERDVTEYKRLENKLTNTARDANAANEAKSAFL 427

Query: 216 SVEKEKYDIF 225
           +    +    
Sbjct: 428 ATMSHEIRTP 437



 Score = 47.7 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/139 (10%), Positives = 35/139 (25%), Gaps = 7/139 (5%)

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
           +     +    L    V        +    G + + N +F  +T Y          G   
Sbjct: 277 AELMERERESKLLATVVKAARDAVVITDQKGTIEWVNRAFEEMTGYALESVQGKKPG--H 334

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
            L   K  ++   +           +   A +            +       +++     
Sbjct: 335 FLQGEKTEESTRQRIAKSLA---QGLPIKAEILNYDSQGREY-WVDIDITPISDENGNLD 390

Query: 429 PQNGIEPEDVDTRINKRKM 447
               IE +  + +  + K+
Sbjct: 391 RFIAIERDVTEYKRLENKL 409


>gi|218886197|ref|YP_002435518.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218757151|gb|ACL08050.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 1548

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 132/631 (20%), Positives = 240/631 (38%), Gaps = 45/631 (7%)

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKN-KVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
             +    +   + +     +    +   + +   L         +      PL     + 
Sbjct: 352 ATRAPVELTPPEGETLRFATGLGDVHPASLRAYPLLLGERLLGVLELATLGPLPPRAATL 411

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
             +      ++     +  +  +L + ++     L               E       + 
Sbjct: 412 FEDMLPMAALSQEVLERNLHTRSLLDQTRRQATEL-----EESRELLRRSEAFFRAVFET 466

Query: 329 CPIPFFVYSHG-NLFYANPSFLLLTKYK-------SVDDIEIAGGLSTLLDAPKLSDNNA 380
             I       G  +  ANP+F               ++D         L       D + 
Sbjct: 467 AGIGIVSERRGLGIDRANPAFSDFIGISEPELRGRDLEDFFHPDDREALEALLSRLDPDK 526

Query: 381 IKPVMLYRSDRT--------------CIAASARLHTIQWNRE-NSLAMTFIPFEKANQFP 425
           ++  +    +                 I   A    ++ + E     +        +  P
Sbjct: 527 LEYAVPRHGNPERDGLDAGEPDQARSTITVRAEHRYLRPDGEVRWADVRCALIGDRDITP 586

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
               +  +  +  + +  + +++        I+ +  D + +++ EG I+  N  + +L 
Sbjct: 587 ---RRVTLINDITELKEQQAELKDTEAWYRGIVHSAPDAMVVVDGEGRIVLCNPQLERLL 643

Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT-LEKITLGSTKEEKLLSLRII 544
           GY + ++       FL +           + L+  L+    E+  +G  K+   L L I 
Sbjct: 644 GYEMGELTGHLVEQFLPEEVRERHVKLRNDFLASPLQVIGHEREVIGVRKDGTRLPLEIS 703

Query: 545 IKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
           + KLP S  +       + DIS  K+ + +L  AK++AE+ +  KSDFLA +SHEIRTP+
Sbjct: 704 LSKLPPSDRHPMSACGALRDISLRKRSEAELRRAKEMAEEATRLKSDFLANMSHEIRTPM 763

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
            AIIG + +          +PR  +Y   I  SG  +L I+ND+LD SKIE+GK+ +   
Sbjct: 764 NAIIGMAHLALKTEL----DPRQADYVRKIRASGQHLLGILNDILDFSKIEAGKLTVENT 819

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFT 719
              L+  +    +LV   A  K +      A N+P +   D   + QI +N  +NA+ FT
Sbjct: 820 EFELETVLDTVANLVSEKAATKGLEFVLDVAANVPPVLRGDPLRLGQILINYANNAVKFT 879

Query: 720 PSGG-QIIISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
             G   I + T  T + +V+LR  VRDTG+G+T+ +  +    F Q   S   +  GTGL
Sbjct: 880 EHGEIVIHVETLETGDTDVLLRFAVRDTGIGLTDEQKARLFVSFQQADTSTTRKYGGTGL 939

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           GL +AK + D   G   + S P  G+     
Sbjct: 940 GLAIAKKLADLMGGGVGVDSVPGGGSTFWFT 970



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/144 (13%), Positives = 44/144 (30%), Gaps = 8/144 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQNTWYG-- 145
           +D  G +   + +L + +G    ++ G  +         + +  +  D L       G  
Sbjct: 626 VDGEGRIVLCNPQLERLLGYEMGELTGHLVEQFLPEEVRERHVKLRNDFLASPLQVIGHE 685

Query: 146 -KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            +      +GT L + I L+ LP   R+         G +    +     A  +R  +  
Sbjct: 686 REVIGVRKDGTRLPLEISLSKLPPSDRH----PMSACGALRDISLRKRSEAELRRAKEMA 741

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQ 228
                +K    +    +       
Sbjct: 742 EEATRLKSDFLANMSHEIRTPMNA 765



 Score = 46.6 bits (109), Expect = 0.018,   Method: Composition-based stats.
 Identities = 26/266 (9%), Positives = 62/266 (23%), Gaps = 42/266 (15%)

Query: 98  ISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL-------------------- 137
            +      IG    ++ G  L D       +    +   L                    
Sbjct: 483 ANPAFSDFIGISEPELRGRDLEDFFHPDDREALEALLSRLDPDKLEYAVPRHGNPERDGL 542

Query: 138 --------KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRV 189
                   +   T   +      +G       D+    I  R+      R   +++    
Sbjct: 543 DAGEPDQARSTITVRAEHRYLRPDGE--VRWADVRCALIGDRD---ITPRRVTLINDITE 597

Query: 190 DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH 249
             + +A  K  +  +  +         V   +  I     P     +  ++  LT +   
Sbjct: 598 LKEQQAELKDTEAWYRGIVHSAPDAMVVVDGEGRIVLCN-PQLERLLGYEMGELTGHLVE 656

Query: 250 KDDVLKTEKYP-------LLTSEESSLPEQEDFH-TINLNQYTKKQYFGTLQNNSKESFE 301
           +    +  +         L +  +    E+E      +  +   +     L  + +    
Sbjct: 657 QFLPEEVRERHVKLRNDFLASPLQVIGHEREVIGVRKDGTRLPLEISLSKLPPSDRHPMS 716

Query: 302 YLSHRNHPSLSAYFDEGENLTPETVD 327
                   SL    +       E  +
Sbjct: 717 ACGALRDISLRKRSEAELRRAKEMAE 742


>gi|144898719|emb|CAM75583.1| PAS [Magnetospirillum gryphiswaldense MSR-1]
          Length = 1067

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 106/640 (16%), Positives = 214/640 (33%), Gaps = 32/640 (5%)

Query: 179 RGFGIVHVNRVDNDPRALGKR-LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK 237
           R  G    +       AL    +      L  + +G   + +   + + Q      LR +
Sbjct: 11  RAVGAADDSEAQAFIDALAAADVSALPEPLARLAQGLPDLLRRVGETYDQHERDLTLRNR 70

Query: 238 NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297
           +   S +E       + +                 E                   ++ + 
Sbjct: 71  SLELSSSELTKANAKLREESAAQARAITSLRTTANEILDAAGRPPLP--------EDETG 122

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSV 357
                    +     A F          +D+  I       G + YAN  F  ++ Y + 
Sbjct: 123 LEGLSTLMADLMRERAEFQHNLERQKFALDQHAIVSITDQTGTIIYANEKFCQISGYDAS 182

Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
           + +    G +  +    L        +     +                  +   +    
Sbjct: 183 ELL----GANHRIVNSGLHPREMFTDMWRTIGNGQVWRGEVCN---SKKDGSLYWVDATI 235

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
               +         GI  +    +  +  +     +L   L+A   G+   N        
Sbjct: 236 VPILDANNRPRQYIGIRTDITARKTMEAALRESEKRLQIALDAGRIGLWSWNTRTDEAFF 295

Query: 478 NRAVSKLFGYPVEDI--LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
           +     + GY   ++      +   +  +        L + L        E       K+
Sbjct: 296 SDQWMAMLGYAANELAACGSTWKALMHPDDCDATYAALEQHLEGATP-VYEAEFRLRHKD 354

Query: 536 EKLLSLRIIIKKLPFSS-----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
                +    + +   +       +    +I++ KQ ++ L  A + AE  +  KS+FLA
Sbjct: 355 GSWRWVLASGRVIDRDAEGRAIRIAGVHKEITDRKQVEDMLKEAVERAEAANRAKSEFLA 414

Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650
            +SHEIRTP+  IIG + ++ + +         + +AN +  S   +L I+ND+LD SK+
Sbjct: 415 TMSHEIRTPMNGIIGMTGLLLDTQLTR----EQMHFANTVRTSAEALLSIINDILDFSKM 470

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIAL 709
           E+G++   + P  +   +   + ++      + + +      +   +   D   ++Q+ L
Sbjct: 471 EAGRLEFEYGPFEIRPLIEGVVDILAPRVKGRNVELTYVVPPSARGVFYGDAGRLRQVLL 530

Query: 710 NILSNAIHFTPSGGQ---IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
           N+  NAI FT  G     I   T       + + V DTG+G+++    +    F Q  +S
Sbjct: 531 NLAGNAIKFTEIGSVHIGIRAETEFDDMVRLRIEVVDTGIGISDNAKSRLFTMFTQADSS 590

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
              R  GTGLGL +++ +VD   G+    ST  +G+    
Sbjct: 591 TARRFGGTGLGLAISRRIVDMMGGEIGFDSTEGQGSTFWF 630



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 47/358 (13%), Positives = 98/358 (27%), Gaps = 35/358 (9%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGKT 147
            D  G +   +E+  +  G  A +++G     V+  LH       +   +     W G+ 
Sbjct: 160 TDQTGTIIYANEKFCQISGYDASELLGANHRIVNSGLHPREMFTDMWRTIGNGQVWRGEV 219

Query: 148 TLWPIEGTNLYVPIDLAALPIYS---RNREFSGFRGFGIVHVNRVDNDPRALGKRLD-KK 203
                +G+     +D   +PI     R R++ G R               A  +  + + 
Sbjct: 220 CNSKKDGSLY--WVDATIVPILDANNRPRQYIGIR-----TDITARKTMEAALRESEKRL 272

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL---TEYYAHKDDVLKTEKYP 260
              L   + G  S      + F        L       +    T       D        
Sbjct: 273 QIALDAGRIGLWSWNTRTDEAFFSDQWMAMLGYAANELAACGSTWKALMHPDDCDATYAA 332

Query: 261 LLTSEESSLPEQE---DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
           L    E + P  E        + +          +  +++     ++  +         +
Sbjct: 333 LEQHLEGATPVYEAEFRLRHKDGSWRWVLASGRVIDRDAEGRAIRIAGVHKEITDR--KQ 390

Query: 318 GENLTPETVDKCPIPFFVYSHGNLFYANPS---FLLLTKYKSVDDIEIAGGLSTLLDAPK 374
            E++  E V+                AN +   FL    ++    +    G++ LL   +
Sbjct: 391 VEDMLKEAVE------------RAEAANRAKSEFLATMSHEIRTPMNGIIGMTGLLLDTQ 438

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
           L+         +  S    ++    +          L   + PFE        +    
Sbjct: 439 LTREQMHFANTVRTSAEALLSIINDILDFSKMEAGRLEFEYGPFEIRPLIEGVVDILA 496


>gi|312890877|ref|ZP_07750406.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM
           18603]
 gi|311296660|gb|EFQ73800.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM
           18603]
          Length = 818

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 108/541 (19%), Positives = 205/541 (37%), Gaps = 21/541 (3%)

Query: 277 TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY 336
              L      Q     +N+   +   L  +          E       T+        + 
Sbjct: 15  RQQLEITRLNQELALAKNSGLPACNGLGDKRDADSHLA--ETVFRLSATISNLNEAVLLE 72

Query: 337 SHGN-LFYANPSFLLLTKY-KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394
                +  AN SF  +         +       +  ++     + A   V +    +   
Sbjct: 73  DENRKIVLANASFCKMFNLKADPQSLVGLDCRGSAEESKFHFKDEAGFVVRIENLLKDRK 132

Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
            A   +  +  +      +    F   N     +       +  + +I +  +     + 
Sbjct: 133 TAVGDVLEL-KDGR----ILNRDFIPINIAGNYIGHLWKYLDITEQKIAQDAIRRREEKY 187

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
             I+E  + G+  ++ E  I+  N++   + G+   +++          N          
Sbjct: 188 RRIIENMNLGLLEVDTEECIIFANQSFCDITGFLPNELIGVNAAKLFLGNRDEESMKEKR 247

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLS 572
           E+    +    E        + K + +                    DI+  K+ ++ L 
Sbjct: 248 ELRKQGISDAYELKIKTKAGDHKWMLISGAPLYDDQKKLTGSIGIHLDITGQKRLESDLI 307

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
            AKKIAE+ S  K  FLA +SHEIRTP+ AI+G S ++         N +   Y   I +
Sbjct: 308 EAKKIAEESSRAKEIFLANMSHEIRTPINAILGLSRLLTKT----TQNSQQRTYTEAIIK 363

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
           S   ++ I+ND+LD++KIE+G++ +     +L + + +   +++    EK +    + + 
Sbjct: 364 SAENLIVIINDILDLTKIEAGQIQIENIEFNLADLIKQLEGVLRYKTEEKGLEFDATTSV 423

Query: 693 NIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN----EEVILRVRDTGVG 747
           ++P + + D   + Q+ LN++ NAI FT  GG I +            E+   V+DTGVG
Sbjct: 424 HVPPVLMGDPYRINQVLLNLVGNAIKFTEKGG-IEVWCKLVDQQKDVNEIQFTVKDTGVG 482

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           M    L+     F Q   S   +  GTGLGL +++ +V+   GK ++ ST   GT+I   
Sbjct: 483 MEPEYLKHIFTNFSQEDASITRKHGGTGLGLSISRQLVELMGGKIHVESTKGLGTVISFT 542

Query: 808 F 808
            
Sbjct: 543 L 543



 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/140 (10%), Positives = 42/140 (30%), Gaps = 7/140 (5%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTWYG 145
            +D    +   ++      G    ++IG+    +  + + D        +L K+  +   
Sbjct: 200 EVDTEECIIFANQSFCDITGFLPNELIGVNAAKL-FLGNRDEESMKEKRELRKQGISDAY 258

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +  +    G   +  + ++  P+Y   ++ +G  G  +           +      K   
Sbjct: 259 ELKIKTKAGD--HKWMLISGAPLYDDQKKLTGSIGIHL--DITGQKRLESDLIEAKKIAE 314

Query: 206 HLHEIKKGHSSVEKEKYDIF 225
                K+   +    +    
Sbjct: 315 ESSRAKEIFLANMSHEIRTP 334


>gi|117923548|ref|YP_864165.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117607304|gb|ABK42759.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1116

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 112/655 (17%), Positives = 232/655 (35%), Gaps = 51/655 (7%)

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244
           H      + +             +      ++      +I+      P        + L+
Sbjct: 328 HAEDSLKESQKALLEAQNIAQVGNWTWTIETNTLSWTDEIYRIFGLIPQETPPTYQAFLS 387

Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
             +      ++      L    +    +      N +  T  +     ++     F  + 
Sbjct: 388 AIHPEDRLFVQNAVNQALEQLNTPYQVEHRIIRPNGDLRTVVELGRVERDQQGTPFRMIG 447

Query: 305 HRNHPSLSAYFDE----GENLTPETVDKCPIPFFVYS----------HGNLFYANPSFLL 350
                +     +      E       D       +++             +   N ++  
Sbjct: 448 TVQDITARKQTEALLLSSEIRFRSLFDSMNEGGALHAMVFNEHGNPIDYRILEVNKAYTE 507

Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
           +               + +           ++           +        +       
Sbjct: 508 ILGITKEQAEGRL--ATEIYGQTSPP---YLELYNRVVKTGQSLRFETEYSPM------- 555

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR-------KMEIEVMQLCSILEATSD 463
                  FE +   P       +  +  + +   +       ++E +   L S+++   D
Sbjct: 556 ----VRNFEISVFSPGENQFATVFTDITERKKTLQKLNGALDELEKKSNFLQSLVQNLPD 611

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
            I + + EG+ L+ N A  +  G   + I  K    F++Q             +      
Sbjct: 612 LIWMKDPEGVFLTCNPAFERFVGSQEQQIKGKTDYDFVDQKLADFFRMNDLLAIEKGGP- 670

Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAE 579
            + +  +    +     L      +              HDI+  KQ +  L HAK+ AE
Sbjct: 671 VINQEWVTFAADGHKALLETTKTPMFDKQGRIIGVLGVAHDITATKQAEQDLIHAKEKAE 730

Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639
                KS+FLA +SHEIRTP+  IIG S+++         +    ++   + ++   +LD
Sbjct: 731 AAYQAKSEFLATMSHEIRTPMNVIIGLSDILMETPI----DHEQRDHLLRLQKANKTLLD 786

Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF--ANNIPRI 697
           +V+ +LD+S+IE+ +++L  EP++L   V E +S++ + A++K + + +    A +    
Sbjct: 787 LVDSILDLSRIEANQISLKQEPLNLALMVEETMSMMSIVADQKGLRLESQVTQATDDYWS 846

Query: 698 LADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDTGVGMTNYELE 754
           L D   ++QI +N++ NA+ FT  G     + + T       V L V+DTG+G+    LE
Sbjct: 847 LGDESRIRQILVNLIGNAVKFTEKGSIWVTLELFTDTLERTLVRLCVKDTGIGIGPEHLE 906

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
                F Q+ +S   R  GTGLGL + + ++    GK ++ S P++G+L  +  P
Sbjct: 907 TIFDKFTQVDSSYARRYSGTGLGLAITRRIIQLMGGKVWVESNPSQGSLFCVELP 961



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/143 (10%), Positives = 39/143 (27%), Gaps = 6/143 (4%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN-HIGDLLKRQNTW 143
             W  D  G     +    + +G+   ++ G    D  D    D    +    +++    
Sbjct: 612 LIWMKDPEGVFLTCNPAFERFVGSQEQQIKGKTDYDFVDQKLADFFRMNDLLAIEKGGPV 671

Query: 144 YGKT-TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
             +    +  +G      ++    P++ +     G  G  + H                +
Sbjct: 672 INQEWVTFAADGH--KALLETTKTPMFDKQGRIIGVLG--VAHDITATKQAEQDLIHAKE 727

Query: 203 KFSHLHEIKKGHSSVEKEKYDIF 225
           K    ++ K    +    +    
Sbjct: 728 KAEAAYQAKSEFLATMSHEIRTP 750



 Score = 42.3 bits (98), Expect = 0.36,   Method: Composition-based stats.
 Identities = 39/386 (10%), Positives = 104/386 (26%), Gaps = 46/386 (11%)

Query: 94  YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIE 153
            + E+++   + +G    +  G    ++              ++K   +   +T   P+ 
Sbjct: 497 RILEVNKAYTEILGITKEQAEGRLATEIYGQTSPPYLELYNRVVKTGQSLRFETEYSPMV 556

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIV-HVNRVDNDPRA----LGKRLDKK---FS 205
             N  + +               G   F  V                    L+KK     
Sbjct: 557 -RNFEISVFS------------PGENQFATVFTDITERKKTLQKLNGALDELEKKSNFLQ 603

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPP--PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
            L +       ++  +    +            + ++   T+Y      +    +   L 
Sbjct: 604 SLVQNLPDLIWMKDPEGVFLTCNPAFERFVGSQEQQIKGKTDYDFVDQKLADFFRMNDLL 663

Query: 264 SEESSLPEQE---DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
           + E   P           + ++   +     + +        L   +  + +   ++   
Sbjct: 664 AIEKGGPVINQEWVTFAADGHKALLETTKTPMFDKQGRIIGVLGVAHDITATKQAEQDLI 723

Query: 321 LTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
              E  +              + A   FL    ++    + +  GLS +L    +     
Sbjct: 724 HAKEKAEAA------------YQAKSEFLATMSHEIRTPMNVIIGLSDILMETPIDHEQR 771

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
              + L ++++T +     +  +     N +++   P   A    E M    I  +    
Sbjct: 772 DHLLRLQKANKTLLDLVDSILDLSRIEANQISLKQEPLNLALMVEETMSMMSIVADQKGL 831

Query: 441 RINKRKMEIE--------VMQLCSIL 458
           R+  +  +            ++  IL
Sbjct: 832 RLESQVTQATDDYWSLGDESRIRQIL 857


>gi|239908790|ref|YP_002955532.1| sensor histidine kinase [Desulfovibrio magneticus RS-1]
 gi|239798657|dbj|BAH77646.1| sensor histidine kinase [Desulfovibrio magneticus RS-1]
          Length = 979

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 128/763 (16%), Positives = 246/763 (32%), Gaps = 55/763 (7%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D    L   S EL K  G+         +   +        + +   +        +   
Sbjct: 228 DNRSRLLAHSAELGKMAGHPGENATLESVLSRAFPEASVALSMLQRQVFSGALKVEREVR 287

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
           +   GT  Y    ++  PI   +          ++             +  + +F  L  
Sbjct: 288 FETNGTPRYW--HISMFPIARDDANHP-LLICTLIQDISERKQAEEALRASESQFKSLFS 344

Query: 210 IKK-GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY-YAHKDDVLKTEKYPLLTSEES 267
                +   +K+  +I    +        + V  L    +  +      E    +     
Sbjct: 345 QSPISNLIHDKDSGEIIDANTAAFVSYGYSSVEELKAGKFWLERPYSLEEALAWIRKAAD 404

Query: 268 SLPEQEDF--HTINLNQYTKKQYFGT--LQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
             P++ ++    +    + +  +     +    +     +       L     +      
Sbjct: 405 QGPQRFEWLSRRVTGELFWEHVHLSPVVINGVERILASGIDITERKRLEMRLADQLAFKQ 464

Query: 324 ETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
             +D  P   F           N ++      K  D I         L         A  
Sbjct: 465 ALMDTIPYAVFYKDAETRFMGCNIAYEETFGIKREDFIGKRVLDLEYLPEQDRHIYQAED 524

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
              +     +       +  I +         +                G+  +  D + 
Sbjct: 525 EATIA----SVGYVRKEM-AIPFVDGLIHQTLYSVNGFRQADGTPGGIIGVIVDISDLKR 579

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
               +     +  SI+E   D     + +G ++  + +  K  GY   D +         
Sbjct: 580 AGVALRESEARYRSIIENIQDMYYRTDVQGRLVLLSPSTPKQLGYDSVDEVLGCLASDF- 638

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS----LTM 558
              P +    L  I +  +    +   L   K+ K L +                     
Sbjct: 639 WMQPELRQELLLRIKTEGV--VKDYEVLLKAKDGKPLLVSATSAYYHDDEGNVLGVEGIF 696

Query: 559 HDISEWKQEKNKLSHAKKIAEKE------------------SSHKSDFLARVSHEIRTPL 600
            DI+E K+ +  L  ++   E+                    + KS FL  VSH++RTPL
Sbjct: 697 RDITERKRGEEALKKSRDELEERVAERTRELTEANARLTELDNLKSAFLNTVSHDLRTPL 756

Query: 601 TAIIGFSEVIKNQ---RFGPLGN---------PRYIEYANYIDRSGNLVLDIVNDLLDIS 648
           T+I+GFS++I+     RF PL            + ++    I   G  +  +V+D LD+S
Sbjct: 757 TSILGFSKIIQRDFTRRFLPLAEGDSVLRNKASKILDNLGVIVSEGERLTRLVSDFLDLS 816

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQ-LYANEKRILIRTSFANNIPRILADLRSVKQI 707
           +IE G+     +   L   +  A+S ++     +  + IR    +++P +  D   + Q+
Sbjct: 817 RIEDGRYVWKDKTTDLGVLIRGAVSSMKGALLQKHGVQIRVDADSHLPALWVDPDRIAQV 876

Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
             N+LSNAI FT  G  + + T   S   + + V DTG+G+   EL      F Q+ +  
Sbjct: 877 LTNLLSNAIKFTSEG-TVTL-TARASTGSIRVSVADTGMGIPPDELPMIFDKFYQVGDDT 934

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            +  +GTGLGL + K +V+   G  ++ ST   G++     PL
Sbjct: 935 LVAEKGTGLGLAICKQIVEHYDGAIWVESTQGVGSVFFFELPL 977



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 51/278 (18%), Positives = 102/278 (36%), Gaps = 43/278 (15%)

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
           QL  IL     G+AI +    +L+ +  + K+ G+P E+   +             ++  
Sbjct: 212 QLQGILGHAPIGVAICDNRSRLLAHSAELGKMAGHPGENATLESVLSRAFPEASVALSML 271

Query: 513 LTEILSLDLRQTLEKITLGST-KEEKLLSLRIIIKKLPFSSC---YSLTMHDISEWKQEK 568
             ++ S  L+  +E+     T    +   + +       ++        + DISE KQ +
Sbjct: 272 QRQVFSGALK--VEREVRFETNGTPRYWHISMFPIARDDANHPLLICTLIQDISERKQAE 329

Query: 569 NKLSHAKKIAEKESSHKSDF----LARVSH-----EI---RTPLTAIIGFS--EVIKNQR 614
             L  ++      S  KS F    ++ + H     EI    T      G+S  E +K  +
Sbjct: 330 EALRASE------SQFKSLFSQSPISNLIHDKDSGEIIDANTAAFVSYGYSSVEELKAGK 383

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM---NLHFEPVSLDEAVSEA 671
           F         E   +I ++ +           +S+  +G++   ++H  PV ++  V   
Sbjct: 384 FWLERPYSLEEALAWIRKAADQGPQ---RFEWLSRRVTGELFWEHVHLSPVVING-VERI 439

Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709
           ++        KR+ +R           AD  + KQ  +
Sbjct: 440 LASGIDITERKRLEMRL----------ADQLAFKQALM 467



 Score = 55.4 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/278 (9%), Positives = 65/278 (23%), Gaps = 14/278 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN---NHIGDLLKRQNT 142
            +  DA       +    +T G      IG R+ D+  +   D +         +     
Sbjct: 474 VFYKDAETRFMGCNIAYEETFGIKREDFIGKRVLDLEYLPEQDRHIYQAEDEATIASVGY 533

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
              +  +  ++G        +        +    G  G  +              +  + 
Sbjct: 534 VRKEMAIPFVDGLIHQTLYSVNG--FRQADGTPGGIIGVIV--DISDLKRAGVALRESEA 589

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
           ++  + E  +        +  +       P     + V  +    A    +    +  LL
Sbjct: 590 RYRSIIENIQDMYYRTDVQGRLVLLSPSTPKQLGYDSVDEVLGCLASDFWMQPELRQELL 649

Query: 263 ---TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
               +E      +      +              ++              +     +E  
Sbjct: 650 LRIKTEGVVKDYEVLLKAKDGKPLLVSATSAYYHDDEGNVLGVEGIFRDITERKRGEEAL 709

Query: 320 NLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSV 357
             + + +++            L  AN     L   KS 
Sbjct: 710 KKSRDELEER----VAERTRELTEANARLTELDNLKSA 743


>gi|46201520|ref|ZP_00054895.2| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 1099

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 114/672 (16%), Positives = 226/672 (33%), Gaps = 36/672 (5%)

Query: 169 YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228
           + + R  S      +    R  N      ++       +         +  +   + S  
Sbjct: 43  HDKERRLSDRSARLMEEELRAANQ--ESRRQAKAHLQAILNTVGEGIVIADQTGTVVSVN 100

Query: 229 SPP---PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTK 285
                         + +  +       +       +    +                   
Sbjct: 101 PALLSIFGYERDEVIGNNIDMLIPLAALKAAGSSGMERIFDLGRESMALRRGGTSFPIEL 160

Query: 286 KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYA 344
                T   +++             +     E E    +        F+           
Sbjct: 161 AAGDLTPTGSAQFVVIMRDISERKRIEREMAESEERFRDFAQSTSDWFWEMGPDLRFTGF 220

Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
           +  F   T+         +  +    D     D      +               ++  +
Sbjct: 221 SGQFTEHTRALP------SHYVGHTRDEMISDDTPMEARLQNLADMEARRPFRDFVYHTK 274

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM---EIEVMQLC----SI 457
                   +        +   E     G   +  +      ++   + E+ +L     SI
Sbjct: 275 NMDGPGRFLRVNGKPVFDPSGEFKGYRGTASDITEEIEAADRLKASQAEIERLAERNNSI 334

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
           LE+  DGI  I+  G     NRA +KL  +   +++       +  +  +     L +IL
Sbjct: 335 LESVDDGIVGIDLNGRATFVNRAAAKLLDFEPAELVGSDILPLMALDMETA--ESLYQIL 392

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHA 574
                   +       ++   L +  I   +          L   DI++ +  + +L  A
Sbjct: 393 LRLADSIRDDTASFKRRDGSPLPVEYIASPVMDKGNQVGVVLGFRDITQRRLVERQLREA 452

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
           K+ AE  +  KS+FLA +SHEIRTP+  +IG + ++ + +           +A  I  SG
Sbjct: 453 KEAAEAGNRTKSEFLATMSHEIRTPMNGVIGMTGLLLDTKL----TEEQRHFAETIRDSG 508

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
             +L ++ND+LD SK+E+GK++L +    L   V   + ++   A+ K I I +     +
Sbjct: 509 ESLLTVINDILDFSKMEAGKLDLDYTEFELVPLVESVVDILAPRAHAKGIEIASLIDPRL 568

Query: 695 PR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEE--VILRVRDTGVGMTN 750
              + +D   ++Q+ +N+  NA+ FT  GG  I ++       +  V   VRDTG+G+  
Sbjct: 569 RMLVRSDPGRLRQVLMNLGGNAVKFTEKGGVSIEVTLLERPGAQPMVHFDVRDTGIGIPP 628

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
               +    F Q+  S   R  GTGLGL + + + +   G+  + S P KG+   +  P+
Sbjct: 629 EAQGRLFSMFMQVDASTARRYGGTGLGLAICRRLAELMGGEVGLESQPGKGSRFWMSVPM 688

Query: 811 Y----DTSHPHD 818
                 ++ P D
Sbjct: 689 ELLAPQSAAPPD 700



 Score = 88.9 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 78/194 (40%), Gaps = 11/194 (5%)

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
           E  L +    +E+ ++      ++    E+     N+         L +IL    +GI I
Sbjct: 30  ETLLRLISDSYEEHDKERRLSDRSARLMEEELRAANQESRRQAKAHLQAILNTVGEGIVI 89

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE- 526
            ++ G ++S N A+  +FGY  ++++     + +           L    S  + +  + 
Sbjct: 90  ADQTGTVVSVNPALLSIFGYERDEVIGNNIDMLIP-------LAALKAAGSSGMERIFDL 142

Query: 527 -KITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
            + ++   +      + +    L  +    + + M DISE K+ + +++ +++     + 
Sbjct: 143 GRESMALRRGGTSFPIELAAGDLTPTGSAQFVVIMRDISERKRIEREMAESEERFRDFAQ 202

Query: 584 HKSDFLARVSHEIR 597
             SD+   +  ++R
Sbjct: 203 STSDWFWEMGPDLR 216



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 41/381 (10%), Positives = 111/381 (29%), Gaps = 35/381 (9%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D  G +  ++  L    G    ++IG  +  +  +  +      G  ++R      ++  
Sbjct: 91  DQTGTVVSVNPALLSIFGYERDEVIGNNIDMLIPLAALKAAGSSG--MERIFDLGRESMA 148

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIV-HVNRVDNDPRALGKRLDKKFSHLH 208
               GT+   PI+LAA      +   +G   F ++                 +++F    
Sbjct: 149 LRRGGTSF--PIELAA-----GDLTPTGSAQFVVIMRDISERKRIEREMAESEERFRDFA 201

Query: 209 EIKKGHSSVEKEKYDI--FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
           +                 FS Q       + +     T      DD     +   L   E
Sbjct: 202 QSTSDWFWEMGPDLRFTGFSGQFTEHTRALPSHYVGHTRDEMISDDTPMEARLQNLADME 261

Query: 267 SSLPEQEDFHT---INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
           +  P ++  +    ++      +     + + S E   Y    +  +      +    + 
Sbjct: 262 ARRPFRDFVYHTKNMDGPGRFLRVNGKPVFDPSGEFKGYRGTASDITEEIEAADRLKASQ 321

Query: 324 ETVDKCPI------------PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
             +++                  +  +G   + N +   L  ++  + +         L 
Sbjct: 322 AEIERLAERNNSILESVDDGIVGIDLNGRATFVNRAAAKLLDFEPAELVGSDILP---LM 378

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
           A  +    ++  ++L  +D    +      + +    + L + +I     ++    +   
Sbjct: 379 ALDMETAESLYQILLRLAD----SIRDDTASFKRRDGSPLPVEYIASPVMDK-GNQVGVV 433

Query: 432 GIEPEDVDTRINKRKMEIEVM 452
               +    R+ +R++     
Sbjct: 434 LGFRDITQRRLVERQLREAKE 454



 Score = 64.3 bits (155), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 40/414 (9%), Positives = 98/414 (23%), Gaps = 36/414 (8%)

Query: 64  NTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD 123
                +SE  F  D    T  + W +         S +  +         +G    ++  
Sbjct: 187 EREMAESEERFR-DFAQSTSDWFWEMGPDLRFTGFSGQFTEHTRALPSHYVGHTRDEMIS 245

Query: 124 ILHIDPNNHIGDL-LKRQNTWYGKTTL-WPIEGTNLYVPIDLAALPIYSRNREFSGFRGF 181
                         ++ +  +         ++G   ++ +     P++  + EF G+RG 
Sbjct: 246 DDTPMEARLQNLADMEARRPFRDFVYHTKNMDGPGRFLRV--NGKPVFDPSGEFKGYRG- 302

Query: 182 GIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ-SPPPHLRMKNKV 240
                   + +     K    +   L E          +               R   K+
Sbjct: 303 -TASDITEEIEAADRLKASQAEIERLAERNNSILESVDDGIVGIDLNGRATFVNRAAAKL 361

Query: 241 SSLTEYYAHKDDVLKTEKYPLLTSE---------ESSLPEQEDFHTINLNQYTKKQYFGT 291
                      D+L      + T+E           S+ +               +Y  +
Sbjct: 362 LDFEPAELVGSDILPLMALDMETAESLYQILLRLADSIRDDTASFKRRDGSPLPVEYIAS 421

Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLL 351
              +       +      +     +       E  +                    FL  
Sbjct: 422 PVMDKGNQVGVVLGFRDITQRRLVERQLREAKEAAEAGN------------RTKSEFLAT 469

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN----- 406
             ++    +    G++ LL   KL++        +  S  + +     +           
Sbjct: 470 MSHEIRTPMNGVIGMTGLLLDTKLTEEQRHFAETIRDSGESLLTVINDILDFSKMEAGKL 529

Query: 407 --RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458
                   +  +     +         GIE   +     +  +  +  +L  +L
Sbjct: 530 DLDYTEFELVPLVESVVDILAPRAHAKGIEIASLIDPRLRMLVRSDPGRLRQVL 583



 Score = 55.0 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/247 (9%), Positives = 66/247 (26%), Gaps = 11/247 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID +G    ++    K +     +++G  +  +  +      +    LL+  ++    T 
Sbjct: 345 IDLNGRATFVNRAAAKLLDFEPAELVGSDILPLMALDMETAESLYQILLRLADSIRDDTA 404

Query: 149 -LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                +G+   +P++  A P+  +  +     GF                +   +     
Sbjct: 405 SFKRRDGSP--LPVEYIASPVMDKGNQVGVVLGF---RDITQRRLVERQLREAKEAAEAG 459

Query: 208 HEIKKGHSSVEKEKYD-----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
           +  K    +    +       +          ++  +     E      + L T    +L
Sbjct: 460 NRTKSEFLATMSHEIRTPMNGVIGMTGLLLDTKLTEEQRHFAETIRDSGESLLTVINDIL 519

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
              +    + +  +T        +     L   +      ++    P L           
Sbjct: 520 DFSKMEAGKLDLDYTEFELVPLVESVVDILAPRAHAKGIEIASLIDPRLRMLVRSDPGRL 579

Query: 323 PETVDKC 329
            + +   
Sbjct: 580 RQVLMNL 586


>gi|298528476|ref|ZP_07015880.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
            thiodismutans ASO3-1]
 gi|298512128|gb|EFI36030.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
            thiodismutans ASO3-1]
          Length = 1599

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 116/746 (15%), Positives = 247/746 (33%), Gaps = 57/746 (7%)

Query: 86   TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
             W +D       ++    +  G     +      +++     D       +L   +  + 
Sbjct: 571  IWVMDHDQKPLLVNSYFKENTGLGTDSVSLTS-DELAACKKSDD-----MVLNGHDPCHF 624

Query: 146  KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
            +  +   +G    +     AL     +    G  G G+              K       
Sbjct: 625  EEGVTFKDGRKHMLQTIKTALA--GGDGRIKGVLGIGV--DITERKRLEQELKEQVNILE 680

Query: 206  HLHEIKKGHSSVE--KEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
             +        +++      + +++       +  ++V     +     +    E      
Sbjct: 681  AIINGIPDILAIQYPDHSIERYNKTGYQVLNKTPDEVRGKKCFELIGKERECEECATRTA 740

Query: 264  SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG----E 319
                 L + E +  I             + +   E  + +      +     +E     E
Sbjct: 741  LRTKELAQLEKY--IPELDIYLNCRSVPIVDEHGEVVKIVEQLRDITSRKLAEEALKKSE 798

Query: 320  NLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
                  V+        +   G   Y N +   +   K  + +                ++
Sbjct: 799  ERYRSLVESQHDAIARIDREGLFTYVNDTCCRIFGKKREELLGSP------FIPYVHEED 852

Query: 379  NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
                   L +  +           +  +      M +      +   + +    +  +  
Sbjct: 853  MEYLLTNLEKVHQHPHRVQIAHRLVTPSG--FYWMHWENSAIFSDSGDIVEIQSVGRDIT 910

Query: 439  DTRINKRKMEIEVMQLCSILEATSDGIAII-----NREGI-ILSTNRAVSKLFGYPVEDI 492
            + ++ ++K+E+       IL+A  +   ++     +++   I   +     + GY  E++
Sbjct: 911  EMKLQQQKLEL-------ILKAAQNVSFVLTEPANDQQDHLIRDFSPGAENILGYNKEEV 963

Query: 493  LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK--LPF 550
            L K   +   +     +      +      Q          K  +       +    L  
Sbjct: 964  LGKSVFMLHSEENFEKVPEIHAAVARN---QPWHGRVWLVRKSGEKYPALFTVYPFNLYS 1020

Query: 551  SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
                     DISE ++ + +L  AK+ AE  +  KS FLA +SHEIRTPLT I+G  E++
Sbjct: 1021 RMGMLGVSIDISELEKAQQELIQAKEQAEAANRAKSTFLANMSHEIRTPLTGIMGSMEML 1080

Query: 611  KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
             ++    + +       +    S   +  I++D+LD+SK+E+G+M L      L   +  
Sbjct: 1081 ASE----ISSENGRRIMDMTRESARSLQRIIDDILDLSKVEAGRMELSSREFVLSAVLDR 1136

Query: 671  AISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
               L    A  K + +  S    +   +L D   ++QI  N++ NA+ FT S GQ+ +  
Sbjct: 1137 VQGLYAAQAENKNVRLSKSLDPGVQDNLLGDASRLEQILRNLVGNAVKFT-SHGQVTLRA 1195

Query: 730  THTSNEE------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
                +++      V   V+DTG G+   +L    + F Q  +S +   +GTGLGL + + 
Sbjct: 1196 RPADSQDGSSKQVVRFEVQDTGPGIPEDKLTDIFESFTQADSSFKKSHQGTGLGLTICRQ 1255

Query: 784  MVDANMGKFYIFSTPAKGTLIEIIFP 809
            +     G   + S P +G+      P
Sbjct: 1256 LTRLMGGNINVESAPGEGSTFVAEIP 1281



 Score =  157 bits (396), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 61/543 (11%), Positives = 152/543 (27%), Gaps = 68/543 (12%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLL-KRQNT 142
            +     G L  ++  L +  G  + + +   + D++  L+ D ++      LL +++  
Sbjct: 30  IYTSTPEGRLLSVNPALARMFGYDSPQDMMESVTDIASQLYADADDREKFKRLLSEKEEL 89

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
              K  +   +GT         A  +  ++     ++ F  V             K+ ++
Sbjct: 90  VNYKCRMRRRDGTIF--WTSKNAKAVRDKDGNVGNYQVF--VTDISDRKQAEEELKKKER 145

Query: 203 KFSHLHEIKKGHSSVEK----------------EKYDIFSQQSPPPHLRMKNKVSSLTEY 246
           K+  L E        +                      + +++P     + N V  +   
Sbjct: 146 KYRQLFEASPISLWEQDFSQVKKRIDSLKAQGIPDLRAYLRENPDLVKELANLVKVVDVN 205

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKK-------------------- 286
                    + K    +   +   E      +       +                    
Sbjct: 206 QVTLRRYHASSKEEFFSGITTVFSEASIEGFLEAPIAIAEGRQELFVENKHLTLDGKPLE 265

Query: 287 ------QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHG 339
                    G  +  S      +         A   E E      V+      + +   G
Sbjct: 266 VQVHWSVAPGHEETYSSVLVCIVDTTELKEAEATLKESEEKYRLLVENLNEGVWQIDKDG 325

Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399
              + N S   +  Y   + ++       L D       +  +  +              
Sbjct: 326 YTTFVNNSMAEMLGYSVQEMLDR-----HLFDFMDEQAVSIARKNLERCRHGVREQLEFE 380

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459
              I  +      +        +Q            +    +  ++++  + + + + LE
Sbjct: 381 F--IHKDGRRIYTLLASS-PIFDQDGNFTGYLAGVQDITKRKQAEKELMFQNILMKTQLE 437

Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ-----NTPSVMNHYLT 514
           A+ DGI +++    I+S N+  ++L+  P   +  +     L+        P      + 
Sbjct: 438 ASPDGIMVVDENDKIISFNQRFAELWELPDSIMSSQSADKALKHVLSKLAYPDEFVRRIH 497

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLS 572
           E+ +    ++ E+I L    + K+          P            DI++ K+ ++ L 
Sbjct: 498 ELCNNKTEESCEEIVL---ADGKIFERYSSPISGPSGDYYGRVWYYRDITDRKKAESALR 554

Query: 573 HAK 575
             +
Sbjct: 555 ENQ 557



 Score =  150 bits (380), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 70/522 (13%), Positives = 148/522 (28%), Gaps = 39/522 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            W ID  GY   ++  + + +G    +M+   L D  D   +       +  +       
Sbjct: 318 VWQIDKDGYTTFVNNSMAEMLGYSVQEMLDRHLFDFMDEQAVSIARKNLERCRHGVREQL 377

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +      +G    +   LA+ PI+ ++  F+G+     V                +    
Sbjct: 378 EFEFIHKDGR--RIYTLLASSPIFDQDGNFTGY--LAGVQDITKRKQAEKELMFQNILMK 433

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHL----------RMKNKVSSLTEYYAHKDDVLK 255
              E       V  E   I S       L          +  +K            D   
Sbjct: 434 TQLEASPDGIMVVDENDKIISFNQRFAELWELPDSIMSSQSADKALKHVLSKLAYPDEFV 493

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
              + L  ++     E+       + +       G   +     + Y    +     +  
Sbjct: 494 RRIHELCNNKTEESCEEIVLADGKIFERYSSPISGPSGDYYGRVWYYRDITDRKKAESAL 553

Query: 316 DEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
            E + L     D  PI  +V  H       N  F   T   +          S  L + +
Sbjct: 554 RENQYLLSTIFDNAPIGIWVMDHDQKPLLVNSYFKENTGLGTD---------SVSLTSDE 604

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
           L+       ++L   D                      +  I    A          GI 
Sbjct: 605 LAACKKSDDMVLNGHDPCHFEEGVTF-----KDGRKHMLQTIKTALAGGDGRIKGVLGIG 659

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
            +  + +  +++++ +V  L +I+    D +AI   +  I   N+   ++     +++  
Sbjct: 660 VDITERKRLEQELKEQVNILEAIINGIPDILAIQYPDHSIERYNKTGYQVLNKTPDEVRG 719

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554
           K     + +          T + + +L Q  + I          + L      +      
Sbjct: 720 KKCFELIGKERECEECATRTALRTKELAQLEKYIPELD------IYLNCRSVPIVDEHGE 773

Query: 555 SL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
            +     + DI+  K  +  L  +++        + D +AR+
Sbjct: 774 VVKIVEQLRDITSRKLAEEALKKSEERYRSLVESQHDAIARI 815



 Score =  115 bits (289), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 43/413 (10%), Positives = 117/413 (28%), Gaps = 53/413 (12%)

Query: 213 GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ 272
              SV      +F   SP   +     ++S     A   +  K     LL+ +E  +  +
Sbjct: 38  RLLSVNPALARMFGYDSPQDMMESVTDIASQLYADADDREKFKR----LLSEKEELVNYK 93

Query: 273 EDFHTINLNQYTKKQYFGTLQNNSKESFEY----LSHRNHPSLSAYFDEGENLTPETVDK 328
                 +   +   +    +++       Y        +         + E    +  + 
Sbjct: 94  CRMRRRDGTIFWTSKNAKAVRDKDGNVGNYQVFVTDISDRKQAEEELKKKERKYRQLFEA 153

Query: 329 CPIPFFVYSHGNL-----------------------------------FYANPSFLLLTK 353
            PI  +      +                                      N   L    
Sbjct: 154 SPISLWEQDFSQVKKRIDSLKAQGIPDLRAYLRENPDLVKELANLVKVVDVNQVTLRRYH 213

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
             S ++     G++T+     +          +  ++            +  + +  L +
Sbjct: 214 ASSKEEF--FSGITTVFSEASI---EGFLEAPIAIAEGRQELF-VENKHLTLDGKP-LEV 266

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
                                 +  + +  +  ++    +   ++E  ++G+  I+++G 
Sbjct: 267 QVHWSVAPGHEETYSSVLVCIVDTTELKEAEATLKESEEKYRLLVENLNEGVWQIDKDGY 326

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
               N +++++ GY V+++L +    F+++   S+    L       +R+ LE   +   
Sbjct: 327 TTFVNNSMAEMLGYSVQEMLDRHLFDFMDEQAVSIARKNLERCR-HGVREQLEFEFIHKD 385

Query: 534 KEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
                  L          +   Y   + DI++ KQ + +L     + + +   
Sbjct: 386 GRRIYTLLASSPIFDQDGNFTGYLAGVQDITKRKQAEKELMFQNILMKTQLEA 438



 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 55/484 (11%), Positives = 129/484 (26%), Gaps = 31/484 (6%)

Query: 118 LCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSG 177
             + S    ++    I    + +   + +     ++G  L V +  +  P +        
Sbjct: 228 FSEASIEGFLEAPIAIA---EGRQELFVENKHLTLDGKPLEVQVHWSVAPGHEET----- 279

Query: 178 FRGFGIV-HVNRVDNDPRALGKRLDKKFSHLHE-IKKGHSSVEKEKYDIFSQQS-PPPHL 234
           +    +         +  A  K  ++K+  L E + +G   ++K+ Y  F   S      
Sbjct: 280 YSSVLVCIVDTTELKEAEATLKESEEKYRLLVENLNEGVWQIDKDGYTTFVNNSMAEMLG 339

Query: 235 RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE-DFHTINLNQYTKKQYFGTLQ 293
               ++     +    +  +   +  L         + E +F   +  +         + 
Sbjct: 340 YSVQEMLDRHLFDFMDEQAVSIARKNLERCRHGVREQLEFEFIHKDGRRIYTLLASSPIF 399

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPET----VDKCPIPFFVYSH-GNLFYANPSF 348
           +       YL+     +     ++            ++  P    V      +   N  F
Sbjct: 400 DQDGNFTGYLAGVQDITKRKQAEKELMFQNILMKTQLEASPDGIMVVDENDKIISFNQRF 459

Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
             L +    D I  +      L    LS        +    +            I     
Sbjct: 460 AELWELP--DSIMSSQSADKAL-KHVLSKLAYPDEFVRRIHELCNNKTEESCEEIVLADG 516

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468
                   P    +   +   +     +  D +  +  +      L +I +    GI ++
Sbjct: 517 KIFERYSSPISGPS--GDYYGRVWYYRDITDRKKAESALRENQYLLSTIFDNAPIGIWVM 574

Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528
           + +   L  N    +  G   + +        L  +  +        +L+       E+ 
Sbjct: 575 DHDQKPLLVNSYFKENTGLGTDSVS-------LTSDELAACKKSDDMVLNGHDPCHFEEG 627

Query: 529 TLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
                  + +L                      DI+E K+ + +L     I E   +   
Sbjct: 628 VTFKDGRKHMLQTIKTALAGGDGRIKGVLGIGVDITERKRLEQELKEQVNILEAIINGIP 687

Query: 587 DFLA 590
           D LA
Sbjct: 688 DILA 691



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/371 (7%), Positives = 101/371 (27%), Gaps = 55/371 (14%)

Query: 322 TPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIA--GGLSTLLDAPKLSDN 378
           + + +   PI  +     G L   NP+   +  Y S  D+  +     S L       + 
Sbjct: 19  SHDILMNAPIGIYTSTPEGRLLSVNPALARMFGYDSPQDMMESVTDIASQLYADADDREK 78

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
                    R              ++         +       ++            +  
Sbjct: 79  -------FKRLLSEKEELVNYKCRMRRRDGTIFWTSKNAKAVRDKDGNVGNYQVFVTDIS 131

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIIN----------------REGI--------- 473
           D +  + +++ +  +   + EA+   +   +                 +           
Sbjct: 132 DRKQAEEELKKKERKYRQLFEASPISLWEQDFSQVKKRIDSLKAQGIPDLRAYLRENPDL 191

Query: 474 ---------ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
                    ++  N+   + +    ++      T    + +          I        
Sbjct: 192 VKELANLVKVVDVNQVTLRRYHASSKEEFFSGITTVFSEASIEGFLEAPIAIAEGRQELF 251

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKES 582
           +E   L    +   + +   +        S   + + D +E K+ +  L  +++      
Sbjct: 252 VENKHLTLDGKPLEVQVHWSVAPGHEETYSSVLVCIVDTTELKEAEATLKESEEKYRLLV 311

Query: 583 SHKSDFLARVSHE-----IRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
            + ++ + ++  +     +   +  ++G+S + + ++      + +     +   ++   
Sbjct: 312 ENLNEGVWQIDKDGYTTFVNNSMAEMLGYSVQEMLDRHLFDFMDEQA---VSIARKNLER 368

Query: 637 VLDIVNDLLDI 647
               V + L+ 
Sbjct: 369 CRHGVREQLEF 379


>gi|330504864|ref|YP_004381733.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina NK-01]
 gi|328919150|gb|AEB59981.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina NK-01]
          Length = 1238

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 116/517 (22%), Positives = 217/517 (41%), Gaps = 46/517 (8%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
             +++   E E      V++ P+   +    G +  AN S   L     ++ +     L 
Sbjct: 346 EKIASELQEREERFRLLVERLPVATLLCDDKGRIEMANRSAAELFDC-PINALPGETVLR 404

Query: 368 TL----LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
            L                   M+       I  S  L+ +                    
Sbjct: 405 VLPNIESPKDLHEQLAESDERMVRTLRGESIPVSISLNPLH------------------- 445

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
             E         +    ++ +        +   ++EA+ + I +++  G I   NR    
Sbjct: 446 --EGSSYLINLVDLRARKVAE-------ERFRLVVEASPNAILLVDGLGRIAMVNRQTEV 496

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLT--EILSLDLRQTLEKITLGSTKEEKLLSL 541
           LFGY  + +L +P  + L               + +    R    +   G  +E +++ L
Sbjct: 497 LFGYERQMLLGEPVEMLLPAAQRGSHVALRRGYQAMPEQRRMGGNRELFGLHREGRMIPL 556

Query: 542 RI--IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
            +     +    +     + DISE K  + KL    +     + +KS+FLA +SHE+RTP
Sbjct: 557 EVGLSPIRSGDENLVQAVIIDISERKAAEQKLREQAEQLLLANRYKSEFLANMSHELRTP 616

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L +I+  S+ ++    G L   +  ++A+ + R+G+ +L ++ND+LD++K+ESG+M L  
Sbjct: 617 LNSILILSDQLRQNLAGNLT-EKQTKHADIVHRAGSDLLQLINDVLDLAKVESGRMQLKL 675

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHF 718
           EP+++ + + E  + ++  A  K + + T     +PRI   D   + QI  N+LSNA+ F
Sbjct: 676 EPINMQDVLVELDASLRPMAELKGLRLHTQLEAGVPRIIHTDRVRLHQILRNLLSNALKF 735

Query: 719 TPSGGQIIISTTHTSNEE-----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
           T  G  + +S +    +E     +   VRD+G+G+   + E+  + F Q+  S   R  G
Sbjct: 736 TDHG-DVTLSVSSQGRQEDERELLCFSVRDSGIGIDPAQHEQIFQAFQQLDGSTSRRFGG 794

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           TGLGL + + +V A  G   + S P  G+   +  P+
Sbjct: 795 TGLGLAITRQLVLALDGDISLQSAPGLGSTFTVRLPV 831



 Score = 40.0 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 18/242 (7%), Positives = 62/242 (25%), Gaps = 11/242 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD---LL--KRQNTW 143
           +D  G +  ++ +     G     ++G  +  +        +  +      +  +R+   
Sbjct: 481 VDGLGRIAMVNRQTEVLFGYERQMLLGEPVEMLLPAAQRGSHVALRRGYQAMPEQRRMGG 540

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +      EG    +P+++   PI S +          ++             +   ++
Sbjct: 541 NRELFGLHREGR--MIPLEVGLSPIRSGDENLVQA----VIIDISERKAAEQKLREQAEQ 594

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
               +  K    +    +             +++  ++        K   +       L 
Sbjct: 595 LLLANRYKSEFLANMSHELRTPLNSILILSDQLRQNLAGNLTEKQTKHADIVHRAGSDLL 654

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
              + + +     +  +    +      +      S   ++      L    + G     
Sbjct: 655 QLINDVLDLAKVESGRMQLKLEPINMQDVLVELDASLRPMAELKGLRLHTQLEAGVPRII 714

Query: 324 ET 325
            T
Sbjct: 715 HT 716



 Score = 37.7 bits (86), Expect = 9.0,   Method: Composition-based stats.
 Identities = 18/239 (7%), Positives = 63/239 (26%), Gaps = 13/239 (5%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D  G ++  +    +        + G  +  V    +I+    + + L        +  +
Sbjct: 374 DDKGRIEMANRSAAELFDCPINALPGETVLRVLP--NIESPKDLHEQLA----ESDERMV 427

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
             + G +  +P+ ++  P++  +           +   +V  +   L          L +
Sbjct: 428 RTLRGES--IPVSISLNPLHEGSSYLINLV---DLRARKVAEERFRLVVEASPNAILLVD 482

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
                + V ++   +F  +           +    +  +H    L+     +        
Sbjct: 483 GLGRIAMVNRQTEVLFGYERQMLLGEPVEMLLPAAQRGSHV--ALRRGYQAMPEQRRMGG 540

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
             +             +     +++  +   + +        +A     E      +  
Sbjct: 541 NRELFGLHREGRMIPLEVGLSPIRSGDENLVQAVIIDISERKAAEQKLREQAEQLLLAN 599


>gi|192360517|ref|YP_001982372.1| putative sensory box histidine kinase/response regulator
           [Cellvibrio japonicus Ueda107]
 gi|190686682|gb|ACE84360.1| putative sensory box histidine kinase/response regulator
           [Cellvibrio japonicus Ueda107]
          Length = 1232

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 123/654 (18%), Positives = 250/654 (38%), Gaps = 41/654 (6%)

Query: 180 GFGIVHVNRVDNDPRALGKRLDKKFSH------LHEIKKGHSSVEKEKYDIFSQQSPPPH 233
           G  ++   ++ N       RL              + +    ++      +F        
Sbjct: 271 GNLVLRYRQLYNQLLNSESRLRAIVDTAVDGIITIDSQGKILAMNNAAEQLFGWTPAEIE 330

Query: 234 LRMKNKVSSLTEYYAHKD---DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG 290
            R    +     +  H     +  KT    ++ +    +   +D   I +     K    
Sbjct: 331 QRNIKMLMPEPYHSEHDSYLHNYAKTGNARIIGTGREVVALHKDGRQIPVRLAVGKAE-- 388

Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF---VYSHGNLFYANPS 347
            L   +             S+       E      +   P   F   + +  N+ + + +
Sbjct: 389 -LPGQTLFVGFVSDISVRKSMERELRTREQQYRTLISNIPGIAFRSHLVAPWNMIFISDA 447

Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
              +T + + D +     +  LL    ++  NA     L R      + +     I  + 
Sbjct: 448 VQRVTGWPASDFMSGHVTMGDLLHPDDVARINAQVTDALSRK----RSYTCEYRVIHRDG 503

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT--SDGI 465
                ++       ++    +  +G+  +  +++           +   ++EA   +  +
Sbjct: 504 SE-HWVSETASGVYDETGTPIWIDGVIMDITESKR-------RAHEFEGVVEAIGRASAV 555

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
           A  + +G I+  N    KL GY   ++L +   +       +    Y      L+     
Sbjct: 556 AEFDMDGTIIGVNENFLKLTGYHKNELLGRHHRILCMPE-EAASEDYQQFWQDLNRGIFR 614

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKE 581
                     E  + ++ I   +               D+SE K  +  L  AK+ AE+ 
Sbjct: 615 SGEFCYIDCNENPIWVQAIYTPIFDVDGKPWKIFTIASDLSERKAMEQDLVAAKERAEQA 674

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
           S  K  FLA +SHEIRTP+ AIIGF+E++ +    P+     +++   + +S   +L ++
Sbjct: 675 SIAKGMFLANMSHEIRTPMNAIIGFTELLLDSALDPV----QLKHMQTVRQSARSLLGLL 730

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILAD 700
           ND+LD +K+E G + L     SL +   + ++ +Q+ A++K + +   + +  P ++L D
Sbjct: 731 NDILDTAKLERGALELDMHVFSLKQLCQQIMAELQIQADKKGLGLHLDYVHTTPDQVLGD 790

Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760
              ++Q+ +N+L NAI FT +G ++ +S        V ++V+DTG+G+    +E    PF
Sbjct: 791 ELRIRQVLVNLLGNAIKFTLTG-EVRLSVDVLGEG-VRMQVQDTGIGIAVERIEHIFTPF 848

Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
            Q   S   R  GTGLG  +A+ + +   GK  + S   +G+   +  PL   +
Sbjct: 849 TQADASMARRFGGTGLGTTIARQLTELMGGKISVTSVEGQGSCFVVWLPLEAAA 902



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/458 (9%), Positives = 120/458 (26%), Gaps = 33/458 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY---- 144
           ID+ G +  ++    +  G    ++    +  +    +   ++       +         
Sbjct: 305 IDSQGKILAMNNAAEQLFGWTPAEIEQRNIKMLMPEPYHSEHDSYLHNYAKTGNARIIGT 364

Query: 145 -GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF-GIVHVNRVDNDPRALGKRLDK 202
             +      +G  + V + +          E  G   F G V    V        +  ++
Sbjct: 365 GREVVALHKDGRQIPVRLAVGKA-------ELPGQTLFVGFVSDISVRKSMERELRTREQ 417

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS--------LTEYYAHKDDVL 254
           ++  L     G +                   R+    +S        + +     D   
Sbjct: 418 QYRTLISNIPGIAFRSHLVAPWNMIFISDAVQRVTGWPASDFMSGHVTMGDLLHPDDVAR 477

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
              +     S + S   +      + +++   +    + + +             + S  
Sbjct: 478 INAQVTDALSRKRSYTCEYRVIHRDGSEHWVSETASGVYDETGTPIWIDGVIMDITESKR 537

Query: 315 FDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
                    E + +          G +   N +FL LT Y   + +        +L  P+
Sbjct: 538 RAHEFEGVVEAIGRASAVAEFDMDGTIIGVNENFLKLTGYHKNELLGR---HHRILCMPE 594

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
            + +   +      +     +            EN + +  I     +   +      I 
Sbjct: 595 EAASEDYQQFWQDLNRGIFRSGEFCYIDC---NENPIWVQAIYTPIFDVDGKPWKIFTIA 651

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS-TNR--AVSKLFGYPVED 491
            +  + +  ++ +     +      + + G+ + N    I +  N     ++L       
Sbjct: 652 SDLSERKAMEQDLVAAKERAEQA--SIAKGMFLANMSHEIRTPMNAIIGFTELL-LDSAL 708

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
              +   +   + +   +   L +IL     +      
Sbjct: 709 DPVQLKHMQTVRQSARSLLGLLNDILDTAKLERGALEL 746


>gi|153002703|ref|YP_001368384.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS185]
 gi|151367321|gb|ABS10321.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS185]
          Length = 1625

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 126/777 (16%), Positives = 271/777 (34%), Gaps = 68/777 (8%)

Query: 90   DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNTWYGKT 147
            D  G +   ++   +  G      +G   C +     I         ++L  + +    T
Sbjct: 363  DTKGQITSWNQGAEQLFGYTEAHALGQSCCKLIVPASIVQEERALFAEVLAGKTSLNRIT 422

Query: 148  TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA----LGKRLDKK 203
            +    +G++L       A+PIY  + + +G      +       +       L   L+++
Sbjct: 423  SHQRQDGSHLSTSTT--AVPIYDEHGKIAGMSQ--TIRDITAQLEAERHILSLNASLERQ 478

Query: 204  FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM------------------KNKVSSLTE 245
             +      +      +   D  +QQ                          + ++   T 
Sbjct: 479  VTKRTHALQQALLENQTLLDTINQQLLYSVTDPNGVILEVNDNFCRISGYPREQLVGKTH 538

Query: 246  YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTIN--LNQYTKKQYFGTLQNNSKESFEYL 303
                  +   +    +     S      +   ++            G + +   +   ++
Sbjct: 539  AILKSGEHDVSFWQSMWQQINSGQSWHGEICNLDKHQTLKWFDTVIGPVFDEYGKIERFV 598

Query: 304  SHRNHPSLSAYFDEGENLTPETVDKCPIP------FFVYSHGNLFYANPSFLLLTKYKSV 357
            + R   +        +N     +                  GN+   N     L  Y + 
Sbjct: 599  ALRIDITDRKLTQIEKNNLGSLLTNVLDAASEMSIIATDVQGNITIFNRGAERLLGYSAE 658

Query: 358  DDIEIAGGLSTLLDAPKLSDNNAIKP------------VMLYRSDRTCIAASARLHTIQW 405
            + I  +      L    +  +  +              +   R++ +      R  T   
Sbjct: 659  EMIGQSTPAPLHLPEEVMVRSAELSAEYGHDIQGFDVFIYKARAEGS----ETRNWTYVR 714

Query: 406  NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465
               +   ++       +   E +   GI  +     + ++ +      L    E    GI
Sbjct: 715  KDGSQFQVSLSVTAMRDSVGEIIGYLGIGVDISLMLLQQQALMTASNHLSKAAEVAQLGI 774

Query: 466  AIINREGIILSTNRAVSKLFG----YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
               N  G  L  N  +  ++        + +  + +++ +  +   V +  L   L    
Sbjct: 775  WTWNLLGNSLEWNERMFAIYDQPESLREQGLTYEHWSMRVHPDDIVVADAKLKAALQGID 834

Query: 522  RQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAE 579
                    + +    + +     I++    +         DI+E +Q +  L  AK  A+
Sbjct: 835  LYDSIFRVVRTDGTIRYVQAAAQIERDKHGNTIRVIGINLDITEQRQLEETLRAAKHEAD 894

Query: 580  KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639
              S+ KS FLA +SHEIRTP+ A++G  ++I++         +  +Y N    +   +L 
Sbjct: 895  AASAAKSAFLANMSHEIRTPMNAVLGMLQLIQHTALSV----QQQDYVNKTQIAAKSLLG 950

Query: 640  IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RIL 698
            ++ND+LD SKI++GK+ L   P S++  + +   ++     +K + +       +P  +L
Sbjct: 951  LLNDILDFSKIDAGKLTLDPHPCSIELLMRDLAVVLSGNHGDKDVEVMFDLDTALPSWLL 1010

Query: 699  ADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVI--LRVRDTGVGMTNYELEK 755
            AD   ++QI +N+  NA+ FT  G  I+ I         V   + + DTG+G+++ ++E+
Sbjct: 1011 ADQLRLQQILVNLAGNALKFTHQGQVIVGIECLRHEANTVTVQISITDTGIGISDEQIER 1070

Query: 756  AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE--IIFPL 810
                F Q  +S   R  G+GLGL ++K +V+   G+  + S    G+     + FP+
Sbjct: 1071 IFTGFEQAESSTSRRFGGSGLGLAISKRLVELMGGQLQVTSQIGVGSRFWFDVTFPI 1127



 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 53/426 (12%), Positives = 113/426 (26%), Gaps = 35/426 (8%)

Query: 168 IYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ 227
               + EF G RGFG +   RV +   A      ++        +  ++ + E+Y I   
Sbjct: 92  TRDVDHEFPGARGFGFIR--RVPSADEAAFIARARQDDWPDFNIRQLNAHDGERYVIEYI 149

Query: 228 QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287
           +   P  R K  V       AH+                + +   +       +    + 
Sbjct: 150 E---PVDRNKAAVGLDIASEAHRKAAADAAMLSGEVRLSAPITLVQATGRPLQSFLILQP 206

Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPS 347
            +                             ++           P            N  
Sbjct: 207 IY--------------------RTGLVPKSQQDRLSAGYGWSYAPLVTNEVLMGLALNQK 246

Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
              L     + DI  A    +  +      +           D         +       
Sbjct: 247 MTKLL----LSDITQAERPISFFETHPDEASPLSAYRHKMTKDIFGRQWQIEVIAYPSFI 302

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
           ++           +      +    I    +  +  ++ +  +  +  S+LE + DGI  
Sbjct: 303 KSLHLNQPSLVLLSGSLFSLLLAALIAMWSISLQRKQQVLLEQARR-ASMLEHSLDGIIS 361

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
            + +G I S N+   +LFGY     L +     +   +       L   +       L +
Sbjct: 362 YDTKGQITSWNQGAEQLFGYTEAHALGQSCCKLIVPASIVQEERALFAEVLAGKTS-LNR 420

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESS 583
           IT    ++   LS       +            T+ DI+   + +  +       E++ +
Sbjct: 421 ITSHQRQDGSHLSTSTTAVPIYDEHGKIAGMSQTIRDITAQLEAERHILSLNASLERQVT 480

Query: 584 HKSDFL 589
            ++  L
Sbjct: 481 KRTHAL 486



 Score = 91.6 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 39/389 (10%), Positives = 105/389 (26%), Gaps = 29/389 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKRQNTWYGKT 147
            D +G + E+++   +  G    +++G     + S    +     +   +    +W+G+ 
Sbjct: 509 TDPNGVILEVNDNFCRISGYPREQLVGKTHAILKSGEHDVSFWQSMWQQINSGQSWHGEI 568

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA--LGKRLDKKFS 205
                  T  +    +   P++    +   F    I   +R         LG  L     
Sbjct: 569 CNLDKHQTLKWFDTVIG--PVFDEYGKIERFVALRIDITDRKLTQIEKNNLGSLLTNVLD 626

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
              E+    + V+                  +  +   T    H  + +      L    
Sbjct: 627 AASEMSIIATDVQGNITIFNRGAERLLGYSAEEMIGQSTPAPLHLPEEVMVRSAELSAEY 686

Query: 266 ESSLPEQEDF----------------HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
              +   + F                   + +Q+        ++++  E   YL      
Sbjct: 687 GHDIQGFDVFIYKARAEGSETRNWTYVRKDGSQFQVSLSVTAMRDSVGEIIGYLGIGVDI 746

Query: 310 SLSAYFDE----GENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAG 364
           SL     +      N   +  +   +  + ++  GN    N     +  Y   + +   G
Sbjct: 747 SLMLLQQQALMTASNHLSKAAEVAQLGIWTWNLLGNSLEWNERMFAI--YDQPESLREQG 804

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
                       D+  +    L  + +      +    ++ +      +      + ++ 
Sbjct: 805 LTYEHWSMRVHPDDIVVADAKLKAALQGIDLYDSIFRVVRTDG-TIRYVQAAAQIERDKH 863

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
              +   GI  +  + R  +  +     +
Sbjct: 864 GNTIRVIGINLDITEQRQLEETLRAAKHE 892


>gi|254414421|ref|ZP_05028187.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196178651|gb|EDX73649.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 992

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 96/741 (12%), Positives = 241/741 (32%), Gaps = 44/741 (5%)

Query: 96  KEISEELPKTIGNYAFKMIGM--RLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIE 153
              S    +T+G +  ++        +       +             T   +     ++
Sbjct: 270 VYYSPRWSQTLGYHVDEISDRFTEWLNRIHPGDRERVLATFQDYIDGLTPSLELEHRLLD 329

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
               Y  I      +   N +   +R  G            +  +   ++  +L      
Sbjct: 330 KEGNYRWILSRGASLRDANGKP--YRIVGSNRDISDRKRTLSTLRLTQERLRYLLSQSPA 387

Query: 214 HS----SVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK--DDVLKTEKYPLLTSEES 267
                           S  +            +   ++ +    + +      L    ++
Sbjct: 388 VLYSRQVSGNYGVTFMSDNTATVVGYSAQDFITNPPFWVNHIHPEDVPRVCANLPKVFDT 447

Query: 268 SLPEQE-DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL-----------SAYF 315
                E  F   +            + + +    E +      +            +   
Sbjct: 448 GHHVYEYRFLHQDGTYRWMHDELKLIYDEAGNPLEMVGFWTDITENKHAELILKQQTKAL 507

Query: 316 DEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
            +        V+  P+    + +   +   +     +  + + +      G    +    
Sbjct: 508 QDAHQRLGFHVENSPLAVVEWDNQFRVQRWSKQAEEIFGWTTSEVFGKRSGDWQFI---Y 564

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
             D   ++  M    D +  +   +   +  +    +   +      ++  + +    + 
Sbjct: 565 PDDIEIVRQEMSQLLDGSTSSVVYQNRNLTKDGRVVICQWYESVLL-DESGKMVSILSLV 623

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
            +  + +  +  +      L  +LE T   IA+ +++      +R   + +    +DI+ 
Sbjct: 624 QDITEAKQTETALRHNAEMLRLLLEYTPAAIAMFDKQMNYQLVSRRWLEDYNLENQDIIG 683

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII--IKKLPFSS 552
           K          P          L     Q  E + + +  E++ +S  I   I      S
Sbjct: 684 KNHYELF-PEIPDTWKQIHQRCLQGASEQCDEDLFIRADGEKQWISWEIRPWIGNSGDIS 742

Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
              +    ++E KQ K KL    +   + +     F    SH+++ PL A+  +++ + +
Sbjct: 743 GIIMNTEVVTERKQAKEKLKELNQELWQSNRDLEQFAYVASHDLQEPLRAVNSYAQ-LLS 801

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
           +++    + +  +Y +YI      +  ++NDLL+ S++ +    L  +P   +  + +A+
Sbjct: 802 RKYQNQLDAKADKYLHYIMDGATRMQQLINDLLEFSRVGTRGKPL--QPTDSETIIRQAM 859

Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF---TPSGGQIIIST 729
             + +   E + ++       +P ++AD   + Q+  N++ NAI F   TP    I    
Sbjct: 860 ENLNVAIAESQAIVTYD---ALPTVIADQTQLTQLFQNLIGNAIKFRRETPPNVHIS--- 913

Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
                 E    V+D G+GM +  L++    F ++ +  +    GTG+GL + K +V+ + 
Sbjct: 914 AQNQGNEWTFVVQDNGIGMESEYLDRIFTIFQRLHS--RRDYPGTGIGLAICKKIVERHG 971

Query: 790 GKFYIFSTPAKGTLIEIIFPL 810
           G+ ++ S    GT      P+
Sbjct: 972 GRIWVNSELGIGTTFYFTIPV 992



 Score =  136 bits (342), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 44/508 (8%), Positives = 128/508 (25%), Gaps = 32/508 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           I+  G + +++    K +G    K+      ++     +     +  L  +      +  
Sbjct: 30  IEPDGRIGQLNPAWCKVLGWTPEKVRSRHWIELVHPEDVTAT--LTALATKAVPVSFRNR 87

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +G   ++   L     Y          G+ +                LD+ F+   
Sbjct: 88  YRHDQGNYHWLEWTLN----YDEAG-----YGYAVAREITDSLPRDC---ELDRFFNMSV 135

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT-EKYPLLTSEES 267
            +    +  +     +           +   ++     + H DD + T  +   L +  +
Sbjct: 136 NLM-AIAGSDGYFKRVNPAFERVLGYPLTELLTQPFLEFVHPDDRVATLTEIEKLATGTT 194

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
           S+  +  +   + +         +                     A   E +       +
Sbjct: 195 SIQFENRYRCQDGSYRWLAWNSASFPAKGLIYAVGCDITKQKQTQAILQETQERYELVAE 254

Query: 328 KCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
                 + ++      Y +P +     Y   +  +     +  L+     D   +     
Sbjct: 255 GSNDGLWDWNLLTDQVYYSPRWSQTLGYHVDEISDR---FTEWLNRIHPGDRERVLATFQ 311

Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
              D    +       +         ++       +   +     G   +  D +     
Sbjct: 312 DYIDGLTPSLELEHRLLDKEGNYRWILS-RGASLRDANGKPYRIVGSNRDISDRKRTLST 370

Query: 447 MEIEVMQLCSILEATSDGIAIINREGI--ILSTNRAVSKLFGYPVEDILRKP--FTVFLE 502
           + +   +L  +L  +   +      G   +   +   + + GY  +D +  P  +   + 
Sbjct: 371 LRLTQERLRYLLSQSPAVLYSRQVSGNYGVTFMSDNTATVVGYSAQDFITNPPFWVNHIH 430

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTM 558
                 +   L ++                 ++     +   +K +   +          
Sbjct: 431 PEDVPRVCANLPKVFDTGHHV---YEYRFLHQDGTYRWMHDELKLIYDEAGNPLEMVGFW 487

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKS 586
            DI+E K  +  L    K  +       
Sbjct: 488 TDITENKHAELILKQQTKALQDAHQRLG 515



 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 44/522 (8%), Positives = 146/522 (27%), Gaps = 43/522 (8%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY-GKTT 148
            + GY K ++    + +G    +++     +              + L    T    +  
Sbjct: 142 GSDGYFKRVNPAFERVLGYPLTELLTQPFLEFVHPDDRVATLTEIEKLATGTTSIQFENR 201

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +G+  ++  + A+ P             + +          +A+ +   +++  + 
Sbjct: 202 YRCQDGSYRWLAWNSASFPAKG--------LIYAVGCDITKQKQTQAILQETQERYELVA 253

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHL------RMKNKVSS-LTEYYAHKDDVLKTEKYPL 261
           E             D                  + ++ +  L   +    + +       
Sbjct: 254 EGSNDGLWDWNLLTDQVYYSPRWSQTLGYHVDEISDRFTEWLNRIHPGDRERVLATFQDY 313

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS----HRNHPSLSAYFDE 317
           +     SL  +        N         +L++ + + +  +       +     +    
Sbjct: 314 IDGLTPSLELEHRLLDKEGNYRWILSRGASLRDANGKPYRIVGSNRDISDRKRTLSTLRL 373

Query: 318 GENLTPETVDKCPIPFF---VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
            +      + + P   +   V  +  + + + +   +  Y + D I         +    
Sbjct: 374 TQERLRYLLSQSPAVLYSRQVSGNYGVTFMSDNTATVVGYSAQDFITNPPFWVNHIHPED 433

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
           +    A  P +               +           M        ++    +   G  
Sbjct: 434 VPRVCANLPKVFDTGH------HVYEYRFLHQDGTYRWMHDELKLIYDEAGNPLEMVGFW 487

Query: 435 PEDVDTRINK-------RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
            +  + +  +       + ++    +L   +E +   +   + +  +   ++   ++FG+
Sbjct: 488 TDITENKHAELILKQQTKALQDAHQRLGFHVENSPLAVVEWDNQFRVQRWSKQAEEIFGW 547

Query: 488 PVEDILRKP--FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
              ++  K      F+  +   ++   ++++L       +       TK+ +++  +   
Sbjct: 548 TTSEVFGKRSGDWQFIYPDDIEIVRQEMSQLLDGSTSSVV-YQNRNLTKDGRVVICQWYE 606

Query: 546 KKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
             L   S         + DI+E KQ +  L H  ++      
Sbjct: 607 SVLLDESGKMVSILSLVQDITEAKQTETALRHNAEMLRLLLE 648



 Score = 89.3 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 25/244 (10%), Positives = 76/244 (31%), Gaps = 24/244 (9%)

Query: 334 FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393
            +   G +   NP++  +  +   + +     +        +   +    +    +    
Sbjct: 29  IIEPDGRIGQLNPAWCKVLGWTP-EKVRSRHWIE------LVHPEDVTATLTALATKAVP 81

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
           ++   R    + ++ N   + +      ++            + +              +
Sbjct: 82  VSFRNR---YRHDQGNYHWLEW--TLNYDEAGYGYAVAREITDSLPRDC----------E 126

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
           L      + + +AI   +G     N A  ++ GYP+ ++L +PF  F+  +        +
Sbjct: 127 LDRFFNMSVNLMAIAGSDGYFKRVNPAFERVLGYPLTELLTQPFLEFVHPDDRVATLTEI 186

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH 573
            ++ +     +++       ++     L       P          DI++ KQ +  L  
Sbjct: 187 EKLATG--TTSIQFENRYRCQDGSYRWLAWNSASFPAKGLIYAVGCDITKQKQTQAILQE 244

Query: 574 AKKI 577
            ++ 
Sbjct: 245 TQER 248



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 15/120 (12%), Positives = 33/120 (27%), Gaps = 6/120 (5%)

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
            +    ++D   II  +G I   N A  K+ G+  E +  + +   +     +     L 
Sbjct: 17  QAFFHYSADLFCIIEPDGRIGQLNPAWCKVLGWTPEKVRSRHWIELVHPEDVTATLTALA 76

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA 574
                     +         +     L   +        Y     +I++      +L   
Sbjct: 77  T-----KAVPVSFRNRYRHDQGNYHWLEWTLNYDEAGYGY-AVAREITDSLPRDCELDRF 130



 Score = 48.1 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 41/400 (10%), Positives = 101/400 (25%), Gaps = 41/400 (10%)

Query: 76  FDPIPRTVRFT-WNIDAHGYLKEISEELPKTIGNYAFKMIGMR--LCDVSDILHIDPNNH 132
           F      +    W  D    ++  S++  +  G    ++ G R           I+    
Sbjct: 516 FHVENSPLAVVEW--DNQFRVQRWSKQAEEIFGWTTSEVFGKRSGDWQFIYPDDIEIVRQ 573

Query: 133 IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192
               L   +T         +      V        +   + +        +V        
Sbjct: 574 EMSQLLDGSTSSVVYQNRNLTKDGRVVICQWYESVLLDESGKMV--SILSLVQDITEAKQ 631

Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKE--KYDIFSQQSPPPHLRMKNKVSSLTEYYAHK 250
                +   +    L E      ++  +   Y + S++    +      +     Y    
Sbjct: 632 TETALRHNAEMLRLLLEYTPAAIAMFDKQMNYQLVSRRWLEDYNLENQDIIGKNHYELFP 691

Query: 251 DDVLKTEKYPLLTSEESSLPEQED-FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
           +     ++      + +S    ED F   +  +            NS +    + +    
Sbjct: 692 EIPDTWKQIHQRCLQGASEQCDEDLFIRADGEKQWISWEIRPWIGNSGDISGIIMNTEVV 751

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEI-AGGLST 368
           +      E      + +                           ++S  D+E  A   S 
Sbjct: 752 TERKQAKEKLKELNQEL---------------------------WQSNRDLEQFAYVASH 784

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
            L  P  + N+  + +     ++    A   LH I  +    +        + ++     
Sbjct: 785 DLQEPLRAVNSYAQLLSRKYQNQLDAKADKYLHYI-MDGATRMQQLINDLLEFSRVGTRG 843

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSIL--EATSDGIA 466
                   +   R     + + + +  +I+  +A    IA
Sbjct: 844 KPLQPTDSETIIRQAMENLNVAIAESQAIVTYDALPTVIA 883


>gi|312891850|ref|ZP_07751356.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM
            18603]
 gi|311295684|gb|EFQ72847.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM
            18603]
          Length = 1449

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 132/755 (17%), Positives = 270/755 (35%), Gaps = 50/755 (6%)

Query: 85   FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS-DILHIDPNNHIGDLLKRQNTW 143
            F    D  G    ++      +G    +++   L D+     H+  N+++ + +  + + 
Sbjct: 302  FMCTHDLQGRFLSVNSAGATILGYTKDEILQRSLFDIIPASRHLLINDYLAE-IAAKGSS 360

Query: 144  YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             G+       G       +         N    G              +   L   L + 
Sbjct: 361  KGQMITRSKNGGGNIWMYNNKLQNASDGNSYVIG--------NAIDITERHRLEDDLRRT 412

Query: 204  FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV---------L 254
               L +          E        S     +  + VS+  +                  
Sbjct: 413  KEALEQTNSVARVGGWELDIEKQNISWTAITKEIHGVSADYQPRLDNAIRFYKEGKSRER 472

Query: 255  KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS---KESFEYLSHRNHPSL 311
             TE   L  S  +    +         +   +        N    +    +         
Sbjct: 473  ITEVINLAISNGTPWDLELQIVNTQGREIWVRAIGNAEFENGMCKRIYGTFQDIDETKKT 532

Query: 312  SAYFDEGENLTPETVDKCPIPFFVYSH--GNLFYANPSFLLLTKYKSVDDIEIAGGL--- 366
            +   +    L  + +        + +   G +   N     LT Y + + +         
Sbjct: 533  AIAVNTSRKLFKDLLYAASEVSIIATDVNGLITVFNKGAEKLTGYAADEMVGKQTPAIIH 592

Query: 367  ---------STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
                       L     +S       V + +   +         T       S  ++ + 
Sbjct: 593  SPAEVNKRGEELTAHYGVSVEGFGVFVKVAQITGS----EHHEWTYIKKDGTSRIVSLVV 648

Query: 418  FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
                +   +     GI  +  + RI ++K+  E  +L + ++     +A+++ E   ++ 
Sbjct: 649  TPIRDIDNQINGYLGIATDITERRIIEQKLIAERARLSAFVKNAPAAVAMLDNEMRYIAV 708

Query: 478  NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
            +    + +     D++ +         + +  + +   +     R+  + + L +  E +
Sbjct: 709  SNRWLEDYQLTGTDVIGRSHYDLFGSVSVNRRSMHQWVLAGNIERKEEDTLILPNINEVQ 768

Query: 538  LLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
             ++  +              +   +I+   +++ +L +AK  AE+ +  KS+FLA +SHE
Sbjct: 769  YITWEMRPWYQYDGKIGGMMMFTQNITSMIKQREELKNAKLHAEQANIAKSEFLANMSHE 828

Query: 596  IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
            IRTPL  +IGF++++   +     N    +Y + +++S N +L I+ND+LD SKIE+GK+
Sbjct: 829  IRTPLNGVIGFTDLVLKTKL----NETQQQYLSIVNQSANALLSIINDILDFSKIEAGKL 884

Query: 656  NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSN 714
             L  E   L E   +A  ++      K + +  + + ++PR I AD   +KQI +N+L N
Sbjct: 885  ELDAERCDLYEMSCQATDIITYQVQTKGLEMLLNISPDLPRFIYADTVRLKQILVNLLGN 944

Query: 715  AIHFTPSGG---QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
            A  FT  G    +I + +T   N  +   VRDTG+G+   +  K  + F Q   S   + 
Sbjct: 945  ASKFTDQGEIELKIEVLSTTGDNTSMRFGVRDTGIGIKPEKQAKIFEAFSQEDGSTTKKY 1004

Query: 772  EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
             GTGLGL ++  ++     K  + S P KG+L   
Sbjct: 1005 GGTGLGLTISNKLLGLMGSKLQLESVPGKGSLFYF 1039



 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 65/533 (12%), Positives = 155/533 (29%), Gaps = 42/533 (7%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151
            G+ K+++      +G     ++   L D      +         L         T  + 
Sbjct: 187 DGFFKKVNPAFKNVLGWDTEVLLESSLYDFVHPDDLKKTRQEVQRLAMGKQTTNFTHRFR 246

Query: 152 IEGTNLYV--PIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
            +     +   +  +  P             F I      +          +++ +   E
Sbjct: 247 TQNKQYKILQWV-ASPDPTTG--------SLFAIARDITNERAREMALILSEERATAFFE 297

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVS--SLTEYYAHKDDVLKTEKYPLLTSE 265
             +G       +    S  S    +    K+++   SL +       +L  +    + ++
Sbjct: 298 NSQGFMCTHDLQGRFLSVNSAGATILGYTKDEILQRSLFDIIPASRHLLINDYLAEIAAK 357

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
            SS  +                    LQN S  +   + +    +     ++    T E 
Sbjct: 358 GSSKGQMITRSKNGGGNIWMY--NNKLQNASDGNSYVIGNAIDITERHRLEDDLRRTKEA 415

Query: 326 VDKCP-IPFFVYSHGNLFYANPSFLLLTK--YKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
           +++   +        ++   N S+  +TK  +    D +     +        S     +
Sbjct: 416 LEQTNSVARVGGWELDIEKQNISWTAITKEIHGVSADYQPRLDNAIRFYKEGKSRERITE 475

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
            + L  S+ T       L  +               E  N   + +   G   +  +T+ 
Sbjct: 476 VINLAISNGT--PWDLELQIVNTQGREIWVRAIGNAEFENGMCKRIY--GTFQDIDETKK 531

Query: 443 NKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILR-KPFTVF 500
               +         +L A S+  I   +  G+I   N+   KL GY  ++++  +   + 
Sbjct: 532 TAIAVNTSRKLFKDLLYAASEVSIIATDVNGLITVFNKGAEKLTGYAADEMVGKQTPAII 591

Query: 501 LEQNTPSVMNHYLTE------------ILSLDLRQTLEKITLGSTKEE--KLLSLRIIIK 546
                 +     LT             +    +  +         K+   +++SL +   
Sbjct: 592 HSPAEVNKRGEELTAHYGVSVEGFGVFVKVAQITGSEHHEWTYIKKDGTSRIVSLVVTPI 651

Query: 547 KLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
           +   +  + Y     DI+E +  + KL   +        +    +A + +E+R
Sbjct: 652 RDIDNQINGYLGIATDITERRIIEQKLIAERARLSAFVKNAPAAVAMLDNEMR 704



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 37/276 (13%), Positives = 85/276 (30%), Gaps = 18/276 (6%)

Query: 311 LSAYFDEGENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
           +                       V  + G     NP+F  +  + +   +E     S+L
Sbjct: 159 VERRQKAELRNFESLFKLSNDMICVAGTDGFFKKVNPAFKNVLGWDTEVLLE-----SSL 213

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
            D     D    +  +   +              Q  +   L     P            
Sbjct: 214 YDFVHPDDLKKTRQEVQRLAMGKQTTNFTHRFRTQNKQYKILQWVASPDPTTGSL----- 268

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
              I  +  + R  +  + +   +  +  E +   +   + +G  LS N A + + GY  
Sbjct: 269 -FAIARDITNERAREMALILSEERATAFFENSQGFMCTHDLQGRFLSVNSAGATILGYTK 327

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE-EKLLSLRIIIKKL 548
           ++IL++     +  +   ++N YL EI +    +      +  +K     + +     + 
Sbjct: 328 DEILQRSLFDIIPASRHLLINDYLAEIAAKGSSKG---QMITRSKNGGGNIWMYNNKLQN 384

Query: 549 PFSSCYSLT--MHDISEWKQEKNKLSHAKKIAEKES 582
                  +     DI+E  + ++ L   K+  E+ +
Sbjct: 385 ASDGNSYVIGNAIDITERHRLEDDLRRTKEALEQTN 420


>gi|117926233|ref|YP_866850.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117609989|gb|ABK45444.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1202

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 113/650 (17%), Positives = 233/650 (35%), Gaps = 27/650 (4%)

Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE 245
           ++R+  +     + L+++   L +      +  K      + +        ++++     
Sbjct: 132 MSRLALERSEFRRHLERQKFALDQHAIVSITDTKGVILYANDRFCQISGYTQDEILGQAH 191

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDF--HTINLNQYTKKQYFGTLQNNSKESFEYL 303
              +           +  +         +      +   Y          +   +  +Y+
Sbjct: 192 NLVNSGYHDSGFFEVMWRTIARGEVWNGEVCNKAKDGRLYWVSATIVPFLDERGKPIQYI 251

Query: 304 SHRNHPSLSAYFDEG----ENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVD 358
           + R   +     +E             D      F     G   + NP    L  +   +
Sbjct: 252 AIRTDITRQKALEEKIEDNRRFLQSISDNIGEGVFALDVQGFCTFLNPEAERLLGWTQDE 311

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
               +   +      +    N     +    DR     S     I  +      +     
Sbjct: 312 LAGRSFHDTVHYQDAEGMPMNEADCPVHDAVDRGVDYRSDEDVFIHRDGG-IFPVNISVV 370

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
               +        G+     +++  +R+++    +L   L+A++ G    +        +
Sbjct: 371 PVR-EDGVVTGAVGVFQNITESKQIQRQLKQSEERLQIALDASNTGFWDWDPLQDRAYFS 429

Query: 479 RAVSKLFGYPVEDILRKP--FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
                + GY   DIL     +   L       +   L   L    R+  E       K+ 
Sbjct: 430 DQWLSMVGYQQGDILNNSTGWLDLLHGEDLPHVERELEAHL-NGQRKNFEVEFRMRHKQG 488

Query: 537 KLLSLRIIIKKLPFSS-----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
             + +    + +           +    DIS+ K+ +++L  A   AE  +  KS+FLA 
Sbjct: 489 HWVWILSSGRVIERDEEKRALRMAGIHKDISDRKRVEDELKKAMLDAESANRSKSEFLAN 548

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           +SHEIRTP+  ++G  E++ N    P        +      S   +L I+ND+LD SKIE
Sbjct: 549 MSHEIRTPMNGVVGMMELLSNTELTP----EQQSHMRTARNSAESLLTIINDILDFSKIE 604

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALN 710
           +GK+ L      L E V +  +L+    + +++ +  +   ++P ++  D   ++Q+ +N
Sbjct: 605 AGKLELEEIAFDLAELVEDVTALLAQRVDSEKLELLHNAPADLPMQVAGDPTRLRQVLVN 664

Query: 711 ILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
           ++ NA+ FTP G  ++ ++      + V +   VRDTG+G+      +  + F Q   S 
Sbjct: 665 LVGNAVKFTPEGEVEVRMTVERQDADTVTVLTEVRDTGIGIDEAVRPRLFRMFTQADGST 724

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL--IEIIFPLYDTSH 815
             R  GTGLGL ++K +V+   G+    S   +G+     I FP+   + 
Sbjct: 725 TRRFGGTGLGLAISKQLVELMGGEVGFSSVMGQGSTFWFRITFPIVAKAQ 774



 Score =  138 bits (347), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 39/401 (9%), Positives = 108/401 (26%), Gaps = 16/401 (3%)

Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD 251
           D  A+   L +  +   E     S           Q+    +   +  +           
Sbjct: 19  DESAVDALLQELDALPAEQISPASVKALHGLKTLLQRVEQTYEHNERDLLLRNRSLHLSS 78

Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
           + L      L                   +     Q     ++ +               
Sbjct: 79  EELSDANERLRRETARQEQLLSTLRQTANHLLEADQKPTLGEDEASLEQLSDLMSRLALE 138

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
            + F          +D+  I     + G + YAN  F  ++ Y   + +  A      L 
Sbjct: 139 RSEFRRHLERQKFALDQHAIVSITDTKGVILYANDRFCQISGYTQDEILGQA----HNLV 194

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
                D+   + +    +                       ++       ++  + +   
Sbjct: 195 NSGYHDSGFFEVMWRTIARGEVWNGEVCNKA---KDGRLYWVSATIVPFLDERGKPIQYI 251

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
            I  +    +  + K+E     L SI +   +G+  ++ +G     N    +L G+  ++
Sbjct: 252 AIRTDITRQKALEEKIEDNRRFLQSISDNIGEGVFALDVQGFCTFLNPEAERLLGWTQDE 311

Query: 492 ILRKPFTVFLEQNTPS-----VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
           +  + F   +             +  + + +   +    ++      ++  +  + I + 
Sbjct: 312 LAGRSFHDTVHYQDAEGMPMNEADCPVHDAVDRGVDYRSDEDVFI-HRDGGIFPVNISVV 370

Query: 547 KLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
            +              +I+E KQ + +L  +++  +     
Sbjct: 371 PVREDGVVTGAVGVFQNITESKQIQRQLKQSEERLQIALDA 411



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 32/388 (8%), Positives = 100/388 (25%), Gaps = 30/388 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI-GDLLKRQNTWYGKT 147
            D  G +   ++   +  G    +++G     V+   H      +    + R   W G+ 
Sbjct: 162 TDTKGVILYANDRFCQISGYTQDEILGQAHNLVNSGYHDSGFFEVMWRTIARGEVWNGEV 221

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                +G      +    +P      +   +    I              +   +    +
Sbjct: 222 CNKAKDGRLY--WVSATIVPFLDERGKPIQY--IAIRTDITRQKALEEKIEDNRRFLQSI 277

Query: 208 ----------HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257
                      +++   + +  E   +          R  +      +      +     
Sbjct: 278 SDNIGEGVFALDVQGFCTFLNPEAERLLGWTQDELAGRSFHDTVHYQDAEGMPMNEADCP 337

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN---SKESFEYLSHRNHPSLSAY 314
            +  +        +++ F   +   +        ++ +   +     + +      +   
Sbjct: 338 VHDAVDRGVDYRSDEDVFIHRDGGIFPVNISVVPVREDGVVTGAVGVFQNITESKQIQRQ 397

Query: 315 FDEGENLTPETVDKCPIPFFVYSH--GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
             + E      +D     F+ +        Y +  +L +  Y+  D +  + G   LL  
Sbjct: 398 LKQSEERLQIALDASNTGFWDWDPLQDRA-YFSDQWLSMVGYQQGDILNNSTGWLDLLHG 456

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
             L          L   +                      ++     + ++    +   G
Sbjct: 457 EDLPHVERELEAHL---NGQRKNFEVEFRMRHKQGHWVWILSSGRVIERDEEKRALRMAG 513

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEA 460
           I  +  D +  + +++       ++L+A
Sbjct: 514 IHKDISDRKRVEDELK------KAMLDA 535



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/252 (8%), Positives = 67/252 (26%), Gaps = 20/252 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI------DPNNHIGDLLKR 139
            + +D  G+   ++ E  + +G    ++ G    D             + +  + D + R
Sbjct: 285 VFALDVQGFCTFLNPEAERLLGWTQDELAGRSFHDTVHYQDAEGMPMNEADCPVHDAVDR 344

Query: 140 Q-NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
             +    +      +G     P++++ +P+   +   +G    G+          +   K
Sbjct: 345 GVDYRSDEDVFIHRDGGIF--PVNISVVPVR-EDGVVTGA--VGVFQNITESKQIQRQLK 399

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR-------MKNKVSSLTEYYAHKD 251
           + +++     +             D          +        + N    L   +    
Sbjct: 400 QSEERLQIALDASNTGFWDWDPLQDRAYFSDQWLSMVGYQQGDILNNSTGWLDLLHGEDL 459

Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL-QNNSKESFEYLSHRNHPS 310
             ++ E    L  +  +   +        +          + ++  K +          S
Sbjct: 460 PHVERELEAHLNGQRKNFEVEFRMRHKQGHWVWILSSGRVIERDEEKRALRMAGIHKDIS 519

Query: 311 LSAYFDEGENLT 322
                ++     
Sbjct: 520 DRKRVEDELKKA 531


>gi|46201797|ref|ZP_00208250.1| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 641

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 129/578 (22%), Positives = 226/578 (39%), Gaps = 17/578 (2%)

Query: 236 MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN 295
           ++++V S  E+  H+ +  +     L                 ++    +        N+
Sbjct: 71  VRHRVDSAREFRPHRFERTRPNGTILEIIGNPLPGGGFVTTYSDVTVNRQIAENLRGSND 130

Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKY 354
             +       R                  TV   P    ++ +  NL  AN  F  LT+ 
Sbjct: 131 RLDQMVERRTRALQDSEERHRAYGEFLEATVQHMPQGVCLFDNALNLVVANKIFFDLTQI 190

Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIA-ASARLHTIQWNRENSLAM 413
               +++       +L   +  +     P  L R  +   A                + +
Sbjct: 191 PDSFNVKGINFYEFMLYNAQRGEYGPGDPEELARQRQEIAARMEPHAFDRTRPDGTVIEV 250

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
              P                  +  +    +  +        ++LEA    + +I  +G 
Sbjct: 251 RGNPIPGR-------GFISTFTDITERAKAEEALREAATMARAMLEAPGLLVLLIRMDGT 303

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
           I+  N   +   G   + ++       +             + +        E       
Sbjct: 304 IVDLNEEAAVGLGSHKDAMIGTNIFNAMPTKVAERRFALAQQAILEARAIYFEDE----- 358

Query: 534 KEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
           ++ +     +    +         +  HD++     + +L  A  +A+  +  K+DFLA 
Sbjct: 359 RDGRWFETTMTPYPMDQDGIPRVMVIAHDVTHRHHAEQRLREATAMAQAANRTKTDFLAA 418

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           +SHE+RTPL AI+GFSE+I  + FGP+G  RY  Y   I+ +G  +L ++ND+LDIS+IE
Sbjct: 419 MSHELRTPLNAILGFSEIISREMFGPVG-ERYRTYGQDINAAGQHLLAMINDILDISRIE 477

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
            G   L  EPV   E     + LV   A    + +      ++P ++ D R  KQI +N+
Sbjct: 478 IGAFTLCIEPVDPHELAYSCLRLVGSRAEAGNVDLSEDMPESLPHLMIDSRRTKQILINL 537

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           L NA+ FTP GG++ +      +  +   V DTG+GM+  ++  A+ PFGQ+      R 
Sbjct: 538 LGNAVKFTPPGGKVTLRGETRDSGGIAFHVIDTGIGMSEADMAVALSPFGQVDTGLDRRF 597

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           EG GLGLPLAK++ + + G   I S P KGT + + FP
Sbjct: 598 EGAGLGLPLAKSLAELHGGSLEITSIPGKGTTVSVYFP 635



 Score = 55.0 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/140 (12%), Positives = 50/140 (35%), Gaps = 4/140 (2%)

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLF----GYPVEDILRKPFTVFLEQNTPSVM 509
           +  +L+    GI++ + +  ++  NR  + L     G+   D+  +    F  Q      
Sbjct: 4   MQGVLDHLDQGISVFSADLRLVLWNRRFADLHEFPDGFLTHDLAFEDIIRFNAQRGEYGG 63

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN 569
           ++ + +++   +    E       +     ++  II        +  T  D++  +Q   
Sbjct: 64  HYDVEDMVRHRVDSAREFRPHRFERTRPNGTILEIIGNPLPGGGFVTTYSDVTVNRQIAE 123

Query: 570 KLSHAKKIAEKESSHKSDFL 589
            L  +    ++    ++  L
Sbjct: 124 NLRGSNDRLDQMVERRTRAL 143



 Score = 39.2 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 26/425 (6%), Positives = 82/425 (19%), Gaps = 62/425 (14%)

Query: 91  AHGYLKEISEELPKTIGNY---------AFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN 141
           A   L   +                      +I           H D  + +   +    
Sbjct: 20  ADLRLVLWNRRFADLHEFPDGFLTHDLAFEDIIRFNAQRGEYGGHYDVEDMVRHRVDSAR 79

Query: 142 TWYGKTTLW-PIEGTNLYV---------------PIDLA---ALPIYSRNREFSGFRGFG 182
            +           GT L +                + +    A  +   N          
Sbjct: 80  EFRPHRFERTRPNGTILEIIGNPLPGGGFVTTYSDVTVNRQIAENLRGSNDRLDQM---- 135

Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS 242
           +    R   D     +   +      +       +     ++         L       +
Sbjct: 136 VERRTRALQDSEERHRAYGEFLEATVQHMPQGVCLFDNALNLVVANKIFFDLTQIPDSFN 195

Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN------- 295
           +     ++  +   ++           PE+       +    +   F   + +       
Sbjct: 196 VKGINFYEFMLYNAQRGE----YGPGDPEELARQRQEIAARMEPHAFDRTRPDGTVIEVR 251

Query: 296 ------SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSF 348
                       +              E   +    ++   +   +    G +   N   
Sbjct: 252 GNPIPGRGFISTFTDITERAKAEEALREAATMARAMLEAPGLLVLLIRMDGTIVDLNEEA 311

Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
            +       D +      + +           +       + +  + A A     + +  
Sbjct: 312 AVGLG-SHKDAMIGTNIFNAM--------PTKVAERRFALAQQAILEARAIYFEDERDGR 362

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468
                                   I  +       ++++        +     +D +A +
Sbjct: 363 ---WFETTMTPYPMDQDGIPRVMVIAHDVTHRHHAEQRLREATAMAQAANRTKTDFLAAM 419

Query: 469 NREGI 473
           + E  
Sbjct: 420 SHELR 424


>gi|56478892|ref|YP_160481.1| sensory transduction histidine kinase [Aromatoleum aromaticum EbN1]
 gi|56314935|emb|CAI09580.1| putative sensory transduction histidine kinase of highly complex
            domain structure [Aromatoleum aromaticum EbN1]
          Length = 1519

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 143/796 (17%), Positives = 280/796 (35%), Gaps = 55/796 (6%)

Query: 56   DQNQESVSNTNYLDSENTFV-FDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI 114
             + +ES       +    F  F+P           D +        E    +   A +  
Sbjct: 334  AEERESFERAVRAEGGRDFRIFEPGD---------DGNTRPATGRPEYFPVL-YSAPREA 383

Query: 115  GMRLCDVSDILHIDPNNHIGDLLKRQN--TWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172
            G  +  +           +    + +   T  G   L     + L         P++   
Sbjct: 384  GRSILGLDHGYDPHRRVAMEQARQSREAHTVRGVPLLRTKRLSLLVF------QPVHDVA 437

Query: 173  REFSGFRGFGIVHVNRVDN----DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228
            R                      D   L   L +         +       E   I   +
Sbjct: 438  RASWDAAARAGPRDLLGHVVGVFDVEKLFIPLAEAAHTRSIGFRVSDVTSGEPAQILLDE 497

Query: 229  SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL---PEQEDFHTINLNQYTK 285
             P        K           +   K     + T  E  +           +     + 
Sbjct: 498  MPAGVAPTLRKEIGFGGRTWSLELAAKAPTGYVDTHGEEEIYLAFSVLAAVLVAYIALSN 557

Query: 286  KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYAN 345
              +   +Q    E    L+      L+A  DE + +  ++VD   I   V   G     N
Sbjct: 558  AGHTAAIQREVAEQTAELTRALDARLAAE-DERDRIFEQSVDLLGI---VGIDGYFKRVN 613

Query: 346  PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405
            P+F     + + + +          D  + +  +A +    + +         +    +W
Sbjct: 614  PAFARTLGWSNEEFLSRPYLDFVHPDDVEGTRADAARVAAGHTTVGFENRYRCKDGNWRW 673

Query: 406  NRENSLA----MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE-----VMQLCS 456
                ++     + F+      Q  EN         ++  R+++R+  +E       ++ +
Sbjct: 674  LEWKAVPRTGGLMFVTAIDTTQRRENARHLRTLNAELVHRVDEREAALEALGAKKDEIRA 733

Query: 457  ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
            +L+   + +  IN +GI+   N AV  +FGYP+ +++ +  ++ +        + YL   
Sbjct: 734  VLDNLIECVVTINAQGIVQGANAAVEAVFGYPLGEVIGRNVSLLMPSPERERHDDYLARY 793

Query: 517  LSLDLRQTLE--KITLGSTKEEKLLSLRIIIK--KLPFSSCYSLTMHDISEWKQEKNKLS 572
            L    R  +   +   G  K    + + + +   ++     +  T+ DISE K     L+
Sbjct: 794  LDTGARHVIGSTREVEGQHKLGHRIPMELSVAEYRVRDEQFFVGTLRDISERKAFIAALT 853

Query: 573  HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
             A++ AE+ S  KS FLA +SHEIRTP+  ++G  EV+         +    +    I  
Sbjct: 854  RAREDAEQASRAKSAFLAAMSHEIRTPMNGVMGLIEVLARTSL----SEHQADLVATICG 909

Query: 633  SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
            S + +L I++D+LD SKIE+G++ L   PVS+ + V      +   A    + +    + 
Sbjct: 910  SSSTLLRIIDDILDFSKIEAGRLKLDVRPVSIGDLVESLAGSLLPLAARLDVDLSVFVSP 969

Query: 693  NIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE------EVILRVRDTG 745
             +P  + AD   ++Q+  N++ NA+ F+     +                ++ + + D G
Sbjct: 970  EVPERVEADEVRLRQVLYNLVGNAVKFSAGRQNVRGRVAVRVAVADVVPLQLAVSIVDNG 1029

Query: 746  VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
            +G+   ++E+   PF Q   S   R  GTGLGL + + +VD   G   + S P +G+   
Sbjct: 1030 IGIDPEKVEELFNPFTQAEASTTRRFGGTGLGLAICRRLVDLMEGGIKVRSEPGQGSTFT 1089

Query: 806  IIFP-LYDTSHPHDCI 820
            +  P +     P   +
Sbjct: 1090 VTIPFVLSDEQPAPIL 1105


>gi|298530453|ref|ZP_07017855.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509827|gb|EFI33731.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 1112

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 133/773 (17%), Positives = 277/773 (35%), Gaps = 55/773 (7%)

Query: 89  IDAH-GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL----------- 136
           ID+  GY+K  ++      G  A ++  M++ D++ + H +    +              
Sbjct: 47  IDSDTGYIKRANQAALDFYGYSAQELGDMKIQDINVLSHREVQEEMRRASLQDRNYFQFT 106

Query: 137 --LKRQNTWYGKTTLWP----IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIV------ 184
             L        +   WP           +  D+       + ++F  F G   V      
Sbjct: 107 HQLATGEERSVEVYSWPYSTDEGNYLYSIIHDVTPRIEAEKAQQFFLFLGITTVLVVIIA 166

Query: 185 ---HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH---LRMKN 238
                        +  ++ ++K S + +  +    V  +   +  + SP         ++
Sbjct: 167 LLMKYIYSSRAAASRLQQSEEKLSAIFKAARNVGLVVTDMQSVVQEFSPGAEKIFGYSRD 226

Query: 239 KVSSLTEYYAHKDDVLKTEKYPLLT--SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS 296
           ++        H +D        +     ++     +      +   +     F    ++ 
Sbjct: 227 EIMGRYVGVLHLEDESSRFPEYIARLYEQQEGFSVETRLVRKSGEIFPALLNFEPYCDDK 286

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETV----DKCPIPFFVYSHG--NLFYANPSFLL 350
                 L      +     +E  + + E      D     F++ S     + Y +PSF  
Sbjct: 287 GRMVGTLGVTLDITERKKAEEALSKSEEMFRQMADNMGEVFWLRSGDNSRMLYVSPSFEK 346

Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
           +      D          ++     S         +   +        R   I       
Sbjct: 347 VFGRSRQDLYHDPNCFVDMVHGDDRSAVLRELDREVSGDEDASFNMEYR---IVRPDGEI 403

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470
             +    F   +     +   GI  +    +  + + +    +  ++   TSD + ++  
Sbjct: 404 RWVWARSFPVRDAQGVIIRYTGIAVDITRIKEAENEFKALSREYETVFNGTSDALFLVQV 463

Query: 471 EG----IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
            G      +  N    +L G  +E I  +     L ++    ++      +      + E
Sbjct: 464 LGEESFRFIRNNLTHEQLTGLTMEVIQGRTPQDVLGRDLGGQVSRNYQRCVQARAPISYE 523

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
           +       E    +    + +    S    +  DI+E K  + +L  AK+ AEK S  KS
Sbjct: 524 ETLDLPGGERVWFTTLTPVFENGDISYIVGSAQDITERKNAEIELYQAKEQAEKASMAKS 583

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
           +FLA +SHEIRTP++ IIG  +++ ++      +    +  +    S   +  I+ND+LD
Sbjct: 584 EFLANMSHEIRTPISGIIGALDMLASES----ADQSRKDLVDMTLESARSLEQIINDILD 639

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVK 705
           +SK+E+GK++L  E  SL   V   + L  + A  + I ++    + +P  +  D   ++
Sbjct: 640 LSKVEAGKLDLVHEDFSLRSLVRRVLGLYSIQARNQGIALKVDADSRLPEYVRGDAHRLE 699

Query: 706 QIALNILSNAIHFTPSGGQIIISTTH----TSNEEVILRVRDTGVGMTNYELEKAMKPFG 761
           Q+  N++SNA+ FT +G  ++I             V  +V D+G G++   L      F 
Sbjct: 700 QVLRNLVSNAVKFTQAG-HVLIRVKAMDIDEHKATVEFQVEDSGEGISGDFLPSLFDSFT 758

Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           Q   +   + +G+GLGL +++ +V    G+  + STP +G++      L  +S
Sbjct: 759 QADITYGKKHQGSGLGLAISQRLVQMMGGEIQVQSTPGRGSVFSFALTLGISS 811


>gi|157376000|ref|YP_001474600.1| Signal transduction histidine kinase-like protein [Shewanella
            sediminis HAW-EB3]
 gi|157318374|gb|ABV37472.1| Signal transduction histidine kinase-like protein [Shewanella
            sediminis HAW-EB3]
          Length = 2213

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 120/635 (18%), Positives = 247/635 (38%), Gaps = 32/635 (5%)

Query: 201  DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK---TE 257
            ++ F+ L       + + + +               ++            D  L    T 
Sbjct: 1074 ERSFTELPFTFMTQAIINQAQQATGRANIQSNIEGYRDYRGVAVLGVWRWDSRLGLGVTT 1133

Query: 258  KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
            +  L  + ++    +    T  +           L     +       R++  L     E
Sbjct: 1134 EIDLQEALDAFYQMRIHLITTAIVALLLAIASSMLTVTIGQRATTFMRRSNEELEERVKE 1193

Query: 318  GENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDI--------------EI 362
                    ++       V  S G +   +P+   +  + + + +              E 
Sbjct: 1194 RTMRLRSIIENAADGIIVMNSRGIVQNFSPAAETIFGFCASEVVGNNIKMLMPEPTRKEH 1253

Query: 363  AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
             G L   +D  K       + V+  R +         +     + E+          +  
Sbjct: 1254 DGYLKHYIDDVKTKVVGKTREVVGLRKNGETFDMDLAVGEFFIDGEHLFTGMVRDITERK 1313

Query: 423  QFPENMPQNGIEPEDV--DTRINKRKMEIEVMQLCSILEATSDGIAIIN--REGIILSTN 478
            +  + +  +  + E    +    + K++  V  + ++LE     +   +   +      N
Sbjct: 1314 RMDKELRLSKEDLEKTLYEKTSLEEKLKQNVAYMTTLLENLPIAVFAKDVKNDYRFTLWN 1373

Query: 479  RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
                ++FG+    I+ +           +       EI+     + +++ T+ ++  E++
Sbjct: 1374 HVAVEIFGFKSGQIIGRNDYDLFSTEEANHFRRTDEEIVKHLGIKDIQEETITTSHGERI 1433

Query: 539  LSLR--IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
            L      +  +   S+       DI++ KQ + +L  AK++AE  +  KSDFLA +SHEI
Sbjct: 1434 LHTVKVAVPNESGESNILLGITQDITDRKQAEEELMRAKRVAENATRAKSDFLANMSHEI 1493

Query: 597  RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
            RTP+ AIIG S +          + +  +Y N I  +   +L ++ND+LD SK+E+GKM 
Sbjct: 1494 RTPMNAIIGMSHLALQTGL----DRKQRDYINKIQSASESLLALINDILDFSKVEAGKME 1549

Query: 657  LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNA 715
            +  +P +L++ + +   L+ +   EK++ +      ++P  ++ D   + QI +N+ +NA
Sbjct: 1550 IERKPFNLNDTLDKLAQLITVKTREKKLELLIDTHKDVPCGLIGDSLRLGQILINLTNNA 1609

Query: 716  IHFTPSGGQII-ISTTHTSNEEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
            + FT  G  ++ I      +E+V     V+DTG+GMT  ++ K  + F Q   S   +  
Sbjct: 1610 VKFTEKGEVVVSIEKVCVDDEQVTLKFTVKDTGIGMTKEQMGKLFQSFSQADASTTRKYG 1669

Query: 773  GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
            GTGLGL ++K + +   G   + ST  KG+     
Sbjct: 1670 GTGLGLTISKKLTELMGGAISVESTFGKGSSFVFT 1704


>gi|83594543|ref|YP_428295.1| PAS/PAC sensor Signal transduction histidine kinase [Rhodospirillum
           rubrum ATCC 11170]
 gi|83577457|gb|ABC24008.1| PAS/PAC sensor signal transduction histidine kinase [Rhodospirillum
           rubrum ATCC 11170]
          Length = 778

 Score =  376 bits (965), Expect = e-101,   Method: Composition-based stats.
 Identities = 147/756 (19%), Positives = 277/756 (36%), Gaps = 47/756 (6%)

Query: 90  DAHGYLKEISEELPKTI----GNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
                L   +      +    G  A    G R+ ++   L               +    
Sbjct: 28  GPDHRLIRFNRPFASLVETAGGRPAP---GQRMVEILRDLVAPDTGEENRADSGPDDDGR 84

Query: 146 KT---TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRG-----FGIVHVNRVDNDPRALG 197
            T       +EG  L  P ++       R     G R      F ++          A  
Sbjct: 85  GTEDDAAERLEGALLGTPTEIRLG--RDRWGLVHGHRLKDGALFCVLRDITASKAGAARI 142

Query: 198 KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257
              +++        +       + + +            K                    
Sbjct: 143 AESNRRIREAESRLERALESIDQGFYLCDASDTVVLRNAKLAHLLPGLPPLEPGTTYGAM 202

Query: 258 KYPLLTSEESSLPEQEDFHTI-----------------NLNQYTKKQYFGTLQNNSKESF 300
                 +       +     +                 N      +    +L        
Sbjct: 203 MAAACDNGAIPAATRHRTRWLSLCMARHHLPRGAWDFENGRGRWVR-VSESLTPEGGRVG 261

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDD 359
                      S    + E      +         +  +G +   NP+   L  Y++ + 
Sbjct: 262 LLTDITETRKASEQVRQREQRLDGIMKTVVDGIVVIDENGIIESFNPAAERLFGYRAEEV 321

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
           +     ++ L+   +   ++      L       I        ++ +      +      
Sbjct: 322 VG--ASINRLIPGGESGRHDRSLRRYLQTGQAGIIGRGREELALRRDGS---LLPVELAI 376

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
              +  +     G+  +    +   R++     +    +  T + I   + +   ++ + 
Sbjct: 377 SELRLDDRRIFTGLVRDISARKEADRQLRENEERYALAIAGTHEAIVDWDIDSDTITYSD 436

Query: 480 AVSKLFGYPVEDILRK-PFTVFLEQNTPSVMNHYLTEILSLDLRQTL-EKITLGSTK-EE 536
            ++ + G   +D+ R   +   +  +        +  +L  +      +    G    EE
Sbjct: 437 RITAIVGLDPKDLDRSASWIALIHPDHRKDYLTRMDALLRGESSFFSCDFRLAGRAGAEE 496

Query: 537 KLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
           + L  R    + P       S  + DI++ ++ +++L  AK+ AE  +  KS+FL  +SH
Sbjct: 497 RWLRHRATALRRPDGQIYRLSGAVGDITDSRRGEDRLREAKEAAEFANRAKSEFLTNMSH 556

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           E+RTPL AIIGFSEV+ ++ FGPLG  +Y++YA  I  SG  +LD++ND+LD+S+IE+G+
Sbjct: 557 ELRTPLNAIIGFSEVLHSEMFGPLGATQYLDYAASIRDSGRHLLDVINDILDVSRIEAGR 616

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714
             L  EP+   E V+    LV   A    + ++ +    +P +L + R +KQ+ +N+L N
Sbjct: 617 ATLFPEPLDFAEIVASVHRLVNQRAEAAGVRLKITLDPALPPLLGEARRLKQVLINLLGN 676

Query: 715 AIHFTPSGGQIIISTT-HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
           AI FTP+GG+I +S        ++++ V D+G+GM   ++  A++PF QI      R EG
Sbjct: 677 AIKFTPAGGEIALSARGDEDKGQMVIEVSDSGIGMAPEDIPLALEPFRQIDGQLARRYEG 736

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           TGLGLPL+KA V+ + G   + STP  GT I +  P
Sbjct: 737 TGLGLPLSKAFVELHGGTLRVDSTPGAGTRITVRLP 772



 Score = 62.7 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/256 (8%), Positives = 69/256 (26%), Gaps = 18/256 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNT----W 143
           ID +G ++  +    +  G  A +++G  +  +        ++  +   L+         
Sbjct: 297 IDENGIIESFNPAAERLFGYRAEEVVGASINRLIPGGESGRHDRSLRRYLQTGQAGIIGR 356

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL-DK 202
             +      +G+   +P++LA   +   +R        G+V       +     +   ++
Sbjct: 357 GREELALRRDGSL--LPVELAISELRLDDRRIFT----GLVRDISARKEADRQLRENEER 410

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE------YYAHKDDVLKT 256
               +    +     + +   I         + +  K    +       +  H+ D L  
Sbjct: 411 YALAIAGTHEAIVDWDIDSDTITYSDRITAIVGLDPKDLDRSASWIALIHPDHRKDYLTR 470

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
               L         +          +   +     L+    + +         + S   +
Sbjct: 471 MDALLRGESSFFSCDFRLAGRAGAEERWLRHRATALRRPDGQIYRLSGAVGDITDSRRGE 530

Query: 317 EGENLTPETVDKCPIP 332
           +      E  +     
Sbjct: 531 DRLREAKEAAEFANRA 546



 Score = 40.8 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/153 (13%), Positives = 48/153 (31%), Gaps = 14/153 (9%)

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED-ILRKPFTVFLE--------- 502
           +L  I +   +G+A+   +  ++  NR  + L           +     L          
Sbjct: 12  RLIDIFDHLDEGVALYGPDHRLIRFNRPFASLVETAGGRPAPGQRMVEILRDLVAPDTGE 71

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE---EKLLSLRIIIKKLPFSSCYSLTMH 559
           +N               D  + LE   LG+  E    +     +   +L   + +   + 
Sbjct: 72  ENRADSGPDDDGRGTEDDAAERLEGALLGTPTEIRLGRDRWGLVHGHRLKDGALFC-VLR 130

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
           DI+  K    +++ + +   +  S     L  +
Sbjct: 131 DITASKAGAARIAESNRRIREAESRLERALESI 163


>gi|158334364|ref|YP_001515536.1| serine/threonine protein kinase and signal transduction histidine
            kinase (STHK) with GAF and PAS/PAC sensor [Acaryochloris
            marina MBIC11017]
 gi|158304605|gb|ABW26222.1| serine/threonine protein kinase and signal transduction histidine
            kinase (STHK) with GAF and PAS/PAC sensor [Acaryochloris
            marina MBIC11017]
          Length = 2817

 Score =  376 bits (965), Expect = e-101,   Method: Composition-based stats.
 Identities = 123/776 (15%), Positives = 273/776 (35%), Gaps = 66/776 (8%)

Query: 90   DAHGYLKEISEELPKTIGNYAFKMIG---MRLCDVSDILHID-PNNHIGDLLKRQNTWYG 145
            DAH  ++ +S+ +    G      I         +     ++  +  I + L     +  
Sbjct: 1770 DAHWTMEFMSDAVTALSGYPVADFIDNRHRSYASIIHPGDVEWVDQVINEQLTHHQPFSL 1829

Query: 146  KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
            +  +   +G+     +      I++ + +     G  I  ++   +   AL     +  +
Sbjct: 1830 EYRVIHRDGSIR--WVTEKGKGIFNADHQLQHLEGV-IFDISDRKHTELALQLSEARANA 1886

Query: 206  HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA---HKDDVLKT--EKYP 260
               +   G   V  +   I    +    L   +++  L +  A   H DD+ ++      
Sbjct: 1887 AFDQAALGIVEVNNQTGKISRVNNYMCDLLGYSRLELLQKTVADITHPDDLSESYQLMQL 1946

Query: 261  LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
            L   +  +   +E +   +            ++  + E+   L      S     +    
Sbjct: 1947 LQRGKIGNFTTEERYLRQDGGIIWSSTTVTLVEMGNGEAQYSLGMIQDISDRKAAELALK 2006

Query: 321  LTPETVDKC--PIPFFVYS-------HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
             +     +    +P  +Y           L Y +     + + +    ++ A  L   + 
Sbjct: 2007 DSQAQFRRMTENVPGMIYRYVFHPDGQNELTYISSQVREIFEIEPEVALQDASKLWERVH 2066

Query: 372  APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
               L        +  +           RL   Q      L    +          +   +
Sbjct: 2067 PDDL--AFVQSEIQGFHETLQSTPIECRLLLPQK----GLCWIQLIARIERLDNGDTVWD 2120

Query: 432  GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
            G+  +  D +  +  +     +    +E     I +   +G +L  N   ++L GY   +
Sbjct: 2121 GVALDISDRKAAEANLRFSEQRFRRAIEDAPFPIMLHAEDGEVLQINTTWTELTGYTHPE 2180

Query: 492  ILRKP-FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL---RIIIKK 547
            I     +         + +   +         +  E      TK             +  
Sbjct: 2181 IPSTAAWAERAYGKDAARVLKEVMAKKYTLTSRWEEGEFTIQTKNGDQCRWQFSSAPLGV 2240

Query: 548  LPFSSCYSLTM-HDISEWKQEKNKLSHA-------------------------KKIAEKE 581
            LP      ++M  D+++ +Q +++L  A                         K+ A+  
Sbjct: 2241 LPDGRRIVISMAVDVTQRRQTEDELEQANQQLAEYSHTLEQRVEERTQALQIAKEQADSA 2300

Query: 582  SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
            +  KS+FLA +SHE+RTPL  I+G+++++           +  +    I + G+ +L ++
Sbjct: 2301 NQAKSEFLANMSHELRTPLNGILGYAQILNR---STTLIDKERDGIKVIHQCGSHLLSLI 2357

Query: 642  NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701
            +D+LD++KIE+ K+ L      L   +   + + ++ A +K I    +  +    +  D 
Sbjct: 2358 DDILDLAKIEARKLELVPVDTYLPAVLHSVVEICKIKAQQKGIDFVYAPKDLPIGVRVDE 2417

Query: 702  RSVKQIALNILSNAIHFTPSGGQ---IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
            + ++Q+ +N+L NA+ FT +G     + + +T      ++ +V DTG+G+   +L K   
Sbjct: 2418 KCLRQVLINLLGNAVKFTDNGTVTLNVEVLSTSNQEASLLFQVMDTGIGIAETDLSKLFD 2477

Query: 759  PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII--FPLYD 812
             F Q+  ++  R EGTGLGL +++ +V        + S    G+        PL +
Sbjct: 2478 AFEQV-GARDRRAEGTGLGLAISQRIVQLMGHSIEVKSQVGIGSQFSFRLDLPLTE 2532



 Score =  154 bits (388), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 56/515 (10%), Positives = 137/515 (26%), Gaps = 33/515 (6%)

Query: 92   HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG-KTTLW 150
             G +   ++      G    + IG  +  +          HI   LK + +    +T   
Sbjct: 1644 EGIITSWNQAATDLFGYSEAEAIGQSILMLFPPDRHHEETHILTCLKNKKSVENFETVRL 1703

Query: 151  PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH-- 208
              +G  + + + ++  P+ +   +  G     IV   R         ++ + KF +L   
Sbjct: 1704 HKQGYPIDISVTIS--PLVNSQGKVIGASK--IVRDIRERKIAEVALRQSESKFRNLLTN 1759

Query: 209  ------EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL-KTEKYPL 261
                    +       +   D  +  S  P     +          H  DV    +    
Sbjct: 1760 LDGVVYRCQNDAHWTMEFMSDAVTALSGYPVADFIDNRHRSYASIIHPGDVEWVDQVINE 1819

Query: 262  LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE----SFEYLSHRNHPSLSAYFDE 317
              +       +      + +     +    + N   +            +          
Sbjct: 1820 QLTHHQPFSLEYRVIHRDGSIRWVTEKGKGIFNADHQLQHLEGVIFDISDRKHTELALQL 1879

Query: 318  GENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
             E       D+  +     +   G +   N     L  Y  ++ ++         D    
Sbjct: 1880 SEARANAAFDQAALGIVEVNNQTGKISRVNNYMCDLLGYSRLELLQKTVA-----DITHP 1934

Query: 376  SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
             D +    +M           +     ++ +    +  +           E     G+  
Sbjct: 1935 DDLSESYQLMQLLQRGKIGNFTTEERYLRQDGG-IIWSSTTVTLVEMGNGEAQYSLGMIQ 1993

Query: 436  EDVDTRINKRKMEIEVMQLCSILEATSDGI--AIINREGI--ILSTNRAVSKLFGYPVED 491
            +  D +  +  ++    Q   + E     I   + + +G   +   +  V ++F    E 
Sbjct: 1994 DISDRKAAELALKDSQAQFRRMTENVPGMIYRYVFHPDGQNELTYISSQVREIFEIEPEV 2053

Query: 492  ILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
             L+        +  +  + +   +           +E   L   K    + L   I++L 
Sbjct: 2054 ALQDASKLWERVHPDDLAFVQSEIQGFHETLQSTPIECRLLLPQKGLCWIQLIARIERLD 2113

Query: 550  FSSCYS-LTMHDISEWKQEKNKLSHAKKIAEKESS 583
                       DIS+ K  +  L  +++   +   
Sbjct: 2114 NGDTVWDGVALDISDRKAAEANLRFSEQRFRRAIE 2148



 Score =  144 bits (364), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 54/506 (10%), Positives = 139/506 (27%), Gaps = 31/506 (6%)

Query: 93   GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQNTWYGKTTLWP 151
            G    +++      G    +++G     +     +     I   +L +   W G+ T   
Sbjct: 1528 GKFIYLNQFHTTLFGYEPNELLGQSWEKLYSPAEVQLFQEIAFPILAKTGRWSGEATAIR 1587

Query: 152  IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI- 210
             +G++L   + L  L     N +        I           A  + L       +++ 
Sbjct: 1588 KDGSSLDEEVSLFLL----DNGKL-----ICICRDISDRKIAEANSRLLASVVESSNDVI 1638

Query: 211  -----KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
                 +   +S  +   D+F         +  + +        H++  + T      + E
Sbjct: 1639 VTKNLEGIITSWNQAATDLFGYSEAEAIGQ--SILMLFPPDRHHEETHILTCLKNKKSVE 1696

Query: 266  ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
                              T      +       S      R          + E+     
Sbjct: 1697 NFETVRLHKQGYPIDISVTISPLVNSQGKVIGASKIVRDIRERKIAEVALRQSESKFRNL 1756

Query: 326  VDKCPIPFFVYSHG---NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
            +       +   +     + + + +   L+ Y   D I+          +     +    
Sbjct: 1757 LTNLDGVVYRCQNDAHWTMEFMSDAVTALSGYPVADFIDNRH---RSYASIIHPGDVEWV 1813

Query: 383  PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
              ++          S     I  +  +   +T       N   +     G+  +  D + 
Sbjct: 1814 DQVINEQLTHHQPFSLEYRVIHRDG-SIRWVTEKGKGIFNADHQLQHLEGVIFDISDRKH 1872

Query: 443  NKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
             +  +++   +  +  +  + GI  +N + G I   N  +  L GY   ++L+K      
Sbjct: 1873 TELALQLSEARANAAFDQAALGIVEVNNQTGKISRVNNYMCDLLGYSRLELLQKTVADIT 1932

Query: 502  EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SLT 557
              +  S     +  +L                ++  ++     +  +   +         
Sbjct: 1933 HPDDLSESYQLMQ-LLQRGKIGNFTTEERYLRQDGGIIWSSTTVTLVEMGNGEAQYSLGM 1991

Query: 558  MHDISEWKQEKNKLSHAKKIAEKESS 583
            + DIS+ K  +  L  ++    + + 
Sbjct: 1992 IQDISDRKAAELALKDSQAQFRRMTE 2017



 Score =  118 bits (296), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 65/388 (16%), Positives = 123/388 (31%), Gaps = 27/388 (6%)

Query: 193  PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD 252
            P A G  L +  +   + +   + +               + +    V  L       DD
Sbjct: 1385 PEADGALLVRVSATPEQTQLTSTPLADHLDLPVQLIQYVKNTQETLVVDDLATDLPILDD 1444

Query: 253  VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
             L+  +   L      LP     H   L     +   G    +      +L  +   SL 
Sbjct: 1445 FLQQSQPRSL----LCLPILYQSHLRGLLYLQNRNMAGVFTRDRVTVLNFLCSQAAISLE 1500

Query: 313  -AYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
             A   E   L    ++       +   G   Y N     L  Y+  + +  +      L 
Sbjct: 1501 NARLFESLALKSSIIESAVDGMAILEGGKFIYLNQFHTTLFGYEPNELLGQS---WEKLY 1557

Query: 372  APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
            +P            +          S     I+ +  +      +  E +    +N    
Sbjct: 1558 SPAEVQLFQEIAFPILAKTGR---WSGEATAIRKDGSS------LDEEVSLFLLDNGKLI 1608

Query: 432  GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
             I  +  D +I +    +    L S++E+++D I   N EGII S N+A + LFGY   +
Sbjct: 1609 CICRDISDRKIAEANSRL----LASVVESSNDVIVTKNLEGIITSWNQAATDLFGYSEAE 1664

Query: 492  ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
             + +   +    +      H LT + +   +      T+   K+   + + + I  L  S
Sbjct: 1665 AIGQSILMLFPPDRHHEETHILTCLKN--KKSVENFETVRLHKQGYPIDISVTISPLVNS 1722

Query: 552  SCYSL----TMHDISEWKQEKNKLSHAK 575
                +     + DI E K  +  L  ++
Sbjct: 1723 QGKVIGASKIVRDIRERKIAEVALRQSE 1750


>gi|258591257|emb|CBE67554.1| putative Histidine kinase [NC10 bacterium 'Dutch sediment']
          Length = 981

 Score =  376 bits (965), Expect = e-101,   Method: Composition-based stats.
 Identities = 147/836 (17%), Positives = 286/836 (34%), Gaps = 77/836 (9%)

Query: 50  EQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNY 109
           E   F   + +    T        +        +R                   +     
Sbjct: 149 ETRAFAVGDYQIGHITGKATINFGYPIPDDVGPIRAVVFAALDLAWLNRPAADARLPAGS 208

Query: 110 AFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEG----TNLYVPIDLAA 165
              +I         + + DP   IG L    +T   +T L   EG    + +   + L  
Sbjct: 209 VLNVIDRNGT--IVVRYPDPERWIGRL--AVDTPIARTVLAVGEGATETSGVDGIVRLYG 264

Query: 166 -LPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDI 224
             P+         +   GI   +    +   L  R          +    + +  +++ +
Sbjct: 265 FAPLRGALHGPELYVQIGIPT-STAYAEADRLLARNLIGLGLAGVLALAAAWMFGDRFIL 323

Query: 225 FSQQS---PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLN 281
              ++       L+  +    +      +   L      +    + +  ++       L 
Sbjct: 324 RGVRALVYGTERLKAGDLTGRIEVTGRDELGTLAVRFNEMADGLQEA-HDRLAADVRELG 382

Query: 282 QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV-------DKCPIPFF 334
              ++       +    +   L      ++ A+    +  T   V       +  P+  +
Sbjct: 383 YRAQELGLLREIDLMMLAETPLRDLLSKAVEAFARLADAQTCVLVTADPKSGELTPVANW 442

Query: 335 VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR--- 391
                 +     +F      +             +      SD +  +      +     
Sbjct: 443 GPDLEAIRQYFATFRPRAGEEGGSLGRAIATRKAVTTPDVASDPSMERYRDAALALGIRA 502

Query: 392 -TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN------- 443
              +   A  H +         +      +         Q  +  E    R         
Sbjct: 503 ILVVPLVADQHVLGAAGIGYPTVRRFSETEVRSMEGFASQLAVALEQTRLREEAKDRRGL 562

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
           +  +        +++++T D + + +    I++ N    +LFGY   ++   P    + +
Sbjct: 563 EEALYASRQLFQAVVQSTPDAVIVADGSTRIVACNAGAQRLFGYTEGELQGMPVMALVPE 622

Query: 504 NTPSVMNHYLTEILSLDLRQTLEK--ITLGSTKEEKLLSLRIIIKKLPFSSCYS--LTMH 559
                    L         + + +        K+   + + + +              +H
Sbjct: 623 RYRETHRQGLDRFEVTGEARVIGRTIEVDALRKDGSDVPVELSLAGWKTGDRVFYSAILH 682

Query: 560 DISEWKQEKNKLSHA-----------KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
           DI+E KQ    L               +  E  S HKS+FLA +SHE RTPL +IIGFS+
Sbjct: 683 DITERKQYTTHLEQTVQEKTRTLRAANQQLEAASRHKSEFLANMSHEFRTPLNSIIGFSD 742

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
           ++++  FGPL   +   +A  I  SG  +L ++NDLLD+SK+E+GK++LH EP    EA+
Sbjct: 743 ILRDPAFGPLT-EKQARFAQNIQVSGQHLLSLINDLLDLSKVEAGKIDLHPEPFECREAI 801

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
             A++ VQ  A+ K++ +          I+AD    KQI LN+LSNA+ FTP GG+I ++
Sbjct: 802 RAALAEVQPQADLKQLELTPQTDEAPSTIIADPVRFKQILLNLLSNAVKFTPEGGRITVT 861

Query: 729 TTHTSNEE----------------------------VILRVRDTGVGMTNYELEKAMKPF 760
               + +E                            + + V DTG+G+   +L +  + F
Sbjct: 862 VRRAARQEEGDTSQGAAGQGLEILHSTPHTPHPCDVLEIAVADTGIGIKPDDLPRLFQEF 921

Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFPLYDTSH 815
            ++  +   R +GTGLGL L K +V+ + G+    S    +G+   +  P+  T+H
Sbjct: 922 TRLDAAIAKRTKGTGLGLALTKRLVELHGGEIAAVSDGEGRGSTFTVRLPITPTNH 977


>gi|320354148|ref|YP_004195487.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
           2032]
 gi|320122650|gb|ADW18196.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
           2032]
          Length = 900

 Score =  375 bits (964), Expect = e-101,   Method: Composition-based stats.
 Identities = 136/656 (20%), Positives = 252/656 (38%), Gaps = 50/656 (7%)

Query: 190 DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH 249
            N    L K  +     + +    +S++ +         +      M ++ + +      
Sbjct: 88  TNAALELAKYSEIIDVCVGKTDSDNSNLLRVLNTAQGVLNAALVYVMNHEGTVIGSSANV 147

Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
            +  L   +YP       +L     F+        ++ ++      +    + +      
Sbjct: 148 DEPSLTGNEYPFRPYFFHALAGNPTFYPAVGVTTKRRGFYFGAPIYTTSHGKPIGVVVIK 207

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY------ANPSFLLLTKYKSVDDIEI- 362
           +     D   +   +T D       + S+  + +       N         + + +I+  
Sbjct: 208 TSDTSADIFFSHIKDTFDAL-----LVSNDGIVFASTKNEWNFKAAWKIAPERLQEIKDG 262

Query: 363 -------AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
                     L   L AP +  NN    V L     +  +  A L    +     L +  
Sbjct: 263 RQFGDHSLSSLPFSLQAPIIHRNNLRYSVDLLPLSNSGWSI-ATLVPAPFPWAIVLVLNS 321

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM--------QLCSILEATSDGIAI 467
           I           +  +  E E     +  ++              +L +I  A+  GI +
Sbjct: 322 IVLSLGILTGSIVLHSHKEQELTSQVLAGQEASDRAESARRVSVLELETIFSASLVGIIL 381

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT--PSVMNHYLTEILSLDLRQTL 525
           + R G I++ N+ +S +FGY  E+IL      F          +  +L  +   D+ Q  
Sbjct: 382 V-RMGKIINVNKRMSDIFGYSREEILSGDIRQFFSDRQSFRHFVREHLHLLAEGDVEQI- 439

Query: 526 EKITLGSTKEEKLLSLRII---IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES 582
                   K+  L+   +    I     +      + DIS  K  + +L HA++ AE  S
Sbjct: 440 --EYQLKKKDGSLIPCTLSGKAISPQDLAKGTVWVIEDISRRKAVEKELYHAREAAETAS 497

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
             KS+FLA +SHEIRTP+  IIG S ++  +    L      +    I RS   ++ I+N
Sbjct: 498 IAKSEFLANMSHEIRTPMNGIIGLSNILLREDLPDL----QRQQLELIHRSAIRLMIIIN 553

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADL 701
           D+LD SK+E+G+  L     SL   ++E I  ++  A  K + +    A N+P  ++ D 
Sbjct: 554 DILDFSKLEAGRFELEQRLFSLRNLLNEVIQPMEPTAQRKNLRLHLIVAPNVPDMLVGDQ 613

Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTS-------NEEVILRVRDTGVGMTNYELE 754
             + Q+  N++ N++ FT  G QI ++ ++          + ++  V DTG+G+     +
Sbjct: 614 TKIMQVLTNLIDNSLKFTRKG-QITLTVSNQPSPNSFANGDMLLFEVADTGIGIAPTYYD 672

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           K  + F Q  +S   R  GTGLGL ++K +V+   G+ +  S  AKGT      P+
Sbjct: 673 KVFESFSQADSSHSRRFGGTGLGLSISKGLVELMGGRIWFESELAKGTRFSFTLPI 728



 Score = 40.4 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 69/237 (29%), Gaps = 15/237 (6%)

Query: 93  GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTWYGKTTLW 150
           G +  +++ +    G    +++   +           +       LL   +    +  L 
Sbjct: 385 GKIINVNKRMSDIFGYSREEILSGDIRQFFSDRQSFRHFVREHLHLLAEGDVEQIEYQLK 444

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
             +G+   +P  L+   I  ++         G V V    +  +A+ K L     H  E 
Sbjct: 445 KKDGSL--IPCTLSGKAISPQD------LAKGTVWVIEDISRRKAVEKEL----YHAREA 492

Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES-SL 269
            +  S  + E     S +   P   +    + L           + E            +
Sbjct: 493 AETASIAKSEFLANMSHEIRTPMNGIIGLSNILLREDLPDLQRQQLELIHRSAIRLMIII 552

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
            +  DF  +   ++  +Q   +L+N   E  + +                   P+ +
Sbjct: 553 NDILDFSKLEAGRFELEQRLFSLRNLLNEVIQPMEPTAQRKNLRLHLIVAPNVPDML 609


>gi|307153191|ref|YP_003888575.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7822]
 gi|306983419|gb|ADN15300.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7822]
          Length = 1560

 Score =  375 bits (964), Expect = e-101,   Method: Composition-based stats.
 Identities = 132/851 (15%), Positives = 279/851 (32%), Gaps = 91/851 (10%)

Query: 38   KSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRF-TWNIDAHGYLK 96
             +  E   +    Q   T  +            E+   +  + +      +  D  G   
Sbjct: 724  NAFGEFNSNGQMNQIVVTFVDITEFKQAQEELQESKRRYVTLAQASPVGIFRTDVEGNCL 783

Query: 97   EISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQNTWYGKTTLWPIEGT 155
             ++E   +  G    + +G       D              +     +  +      +G+
Sbjct: 784  YVNERWQEIAGLTWQQALGKGWSQAIDYNDQTRVLQEWKQAIINHVPFQAEYRFQRPDGS 843

Query: 156  NLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA-------------------L 196
                 +   A+          GF G   +       +                      L
Sbjct: 844  --VTWVYGQAIAETDEQGILIGFLG--TITDINDRKEAELKLQRLKDELEQKVEKRTWNL 899

Query: 197  GKRLDKKFSHLHEIKKGHSSVEKEKYDI-FSQQSPPPHLRMKN----------------- 238
             +   +    + E ++   +++K +     S +     + + +                 
Sbjct: 900  QRANQQLRQEIFERQQTELALKKSEERFRASFEQAAVGMVLVSLEKRFLKVNPKFCQMLG 959

Query: 239  -------KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291
                   + + L   +      +      L+T E  +L  ++ F                
Sbjct: 960  YTEEELLQKTVLEITHPQDRSQVPQHIEKLITGEIITLSFEKRFFNKTGVTVWTNITISL 1019

Query: 292  LQNNSKES---FEYLS--------HRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHG 339
            +   S +     E +              +      + E       +   +   FV + G
Sbjct: 1020 VHGASGQPDYLMEVVEDITDKKRNEAERQAAREALQKSEAQLRSMFEYAAVGIAFVDAQG 1079

Query: 340  NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399
              F +NP+      Y S + +              L D N  + +     D         
Sbjct: 1080 RPFKSNPAIEKFLGYSSQE-LTQKPFTQFTHPEDALVDLNLYQSLFANNRD----TYQME 1134

Query: 400  LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI-------NKRKMEIEVM 452
               I+ + E  +          N   +     G+  +  D +         +  +     
Sbjct: 1135 KRYIRKDGE-IVWGHLTVSLVRNAKGKPQFAIGMIQDISDAKRSEAERQIAEEALRENQA 1193

Query: 453  QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF--TVFLEQNTPSVMN 510
             L ++++   + I + NR G     N+A++  +G  V+++  K       +         
Sbjct: 1194 FLRNVIDTVPNFIFVKNRAGKYTLANQAMANAYGTTVQELEGKSDGDFHLVAAEITLAGT 1253

Query: 511  HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII--KKLPFSSCYSLTMHDISEWKQEK 568
                 + SL      E+    +  E +               +        DI+E KQ +
Sbjct: 1254 DDQQVMNSLQSLLIPEQSLTLANGEVRYFQTIKTPLVSPDGNAHYILGVATDITERKQIQ 1313

Query: 569  NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
             ++  A    ++    KS F+  VSHE RTPLT+I+G++E +  +    L   + I++ +
Sbjct: 1314 QEIEKALAKEKELHKLKSQFIDIVSHEFRTPLTSILGYAE-LLERHSDKLTTEKKIKHLH 1372

Query: 629  YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE------K 682
             I  +G  + D++ D+L IS+ ESGK+  +   +++ +   + I  +Q+   +      K
Sbjct: 1373 NIQMAGQRLSDLIQDVLCISRAESGKLLYNPTLINVADFCQDLIEEIQIGIGQGYEILFK 1432

Query: 683  RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
            +  +R   + ++  I  D + ++ I  N+LSN I ++P G ++ +S  +  N++VI  +R
Sbjct: 1433 QPNLRPHSSTDL--IYLDEKLLRHILTNLLSNGIKYSPIGSRVELSLQYE-NQQVIFEIR 1489

Query: 743  DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
            D G+G+   +  K    F +   S      GTGLGL + +  V+ + G     ST   GT
Sbjct: 1490 DQGIGIPLEDHPKLFDSFYRA--SNVGNIPGTGLGLNIVQKYVNLHGGTIDFTSTVKVGT 1547

Query: 803  LIEIIFPLYDT 813
              ++  P+  T
Sbjct: 1548 TFKVSLPINKT 1558



 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 52/513 (10%), Positives = 143/513 (27%), Gaps = 34/513 (6%)

Query: 98  ISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH------IGDLLKRQNTWYGKTTLWP 151
            S+E  +  G    + +     + +    + P++       +   L    ++     +  
Sbjct: 418 WSDETYRIFGQDIQQFL---PTENAFFYCLHPDDRELVIKQLNQALYNHKSYKINYRILR 474

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
            +G    V         +       G   FG V             +  ++K  H+    
Sbjct: 475 PDGEIRIVQTQADVS--FDSQGNPLGM--FGTVQDITDSKLMEQELRESEEKLRHIVTTT 530

Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271
                V  +   I+      P       +++        +  L  +   L        P 
Sbjct: 531 ADGLIVMNQSGYIYFVN---PAAESFFGLNANELSEYQWNFSLNHDSTELAIEHLEGKPI 587

Query: 272 QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI 331
             +   +      +  Y  +L++                        E      ++    
Sbjct: 588 FLEVKIVETLWDGEPVYLISLRD----------ITERKQAEEALKISEKRYRNLINNLHA 637

Query: 332 PFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390
              V+     +  +N     L +      +             +      I+   +    
Sbjct: 638 GVVVHQADTSIALSNTKANELLELTPEQILGKTAFDLHWCFLRENGTVMPIEEYPVNIVI 697

Query: 391 RTCIAASARLHTI-QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449
            T       +  I +   +  + +    F + N   +         +  + +  + +++ 
Sbjct: 698 STQKPVKNYVIGINRPQSQTVVWLLINAFGEFNSNGQMNQIVVTFVDITEFKQAQEELQE 757

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
              +  ++ +A+  GI   + EG  L  N    ++ G   +  L K ++  ++ N  + +
Sbjct: 758 SKRRYVTLAQASPVGIFRTDVEGNCLYVNERWQEIAGLTWQQALGKGWSQAIDYNDQTRV 817

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWK 565
                + +   +    +        +  +  +                +  T+ DI++ K
Sbjct: 818 LQEWKQAIINHVP--FQAEYRFQRPDGSVTWVYGQAIAETDEQGILIGFLGTITDINDRK 875

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
           + + KL   K   E++   ++  L R + ++R 
Sbjct: 876 EAELKLQRLKDELEQKVEKRTWNLQRANQQLRQ 908



 Score =  107 bits (268), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 32/277 (11%), Positives = 90/277 (32%), Gaps = 25/277 (9%)

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY-ANPSFLLLTKYKSVDDIEI 362
                  +     E ++   +  +   +  + ++     +  +     +       DI+ 
Sbjct: 377 DITERKQVEISLRESQDRLAKAQEIAHLGNWEWNFLTHEFFWSDETYRIFG----QDIQQ 432

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
                         D+  +    L ++     +       ++ + E    +        +
Sbjct: 433 FLPTENAFFYCLHPDDRELVIKQLNQALYNHKSYKINYRILRPDGE-IRIVQTQADVSFD 491

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
                +   G   +  D+++ ++++     +L  I+  T+DG+ ++N+ G I   N A  
Sbjct: 492 SQGNPLGMFGTVQDITDSKLMEQELRESEEKLRHIVTTTADGLIVMNQSGYIYFVNPAAE 551

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
             FG    ++    +   L  ++  +   +L           LE   + +  + + +   
Sbjct: 552 SFFGLNANELSEYQWNFSLNHDSTELAIEHLE-----GKPIFLEVKIVETLWDGEPV--- 603

Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579
                      Y +++ DI+E KQ +  L  ++K   
Sbjct: 604 -----------YLISLRDITERKQAEEALKISEKRYR 629



 Score =  105 bits (262), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 48/513 (9%), Positives = 129/513 (25%), Gaps = 51/513 (9%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKM-IGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
            D       +   +    G    ++     +  +      D    IG L         + 
Sbjct: 290 TDEQKNFTYVCPNVETIFGYSCQEIQTMKTIEKLLGENLFD----IGQLESCGEIPNIEQ 345

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
            +    G    V +++    +     ++                      +    + +  
Sbjct: 346 KITDKSGKTHVVLVNV--KRVSINEGKY-----LYTCRDITERKQVEISLRESQDRLAKA 398

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA------HKDDVLKTEKYPL 261
            EI    +         F        +  ++    L    A        D  L  ++   
Sbjct: 399 QEIAHLGNWEWNFLTHEFFWSDETYRIFGQDIQQFLPTENAFFYCLHPDDRELVIKQLNQ 458

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
                 S          +      +       ++              + S   ++    
Sbjct: 459 ALYNHKSYKINYRILRPDGEIRIVQTQADVSFDSQGNPLGMFGTVQDITDSKLMEQELRE 518

Query: 322 TPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
           + E +          +   L   N S  +     + +                 S N+  
Sbjct: 519 SEEKLRH----IVTTTADGLIVMNQSGYIYFVNPAAESFFGLNANELSEYQWNFSLNHDS 574

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
             + +   +   I    ++    W+ E    ++                     +  + +
Sbjct: 575 TELAIEHLEGKPIFLEVKIVETLWDGEPVYLISLR-------------------DITERK 615

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP---FT 498
             +  ++I   +  +++     G+ +   +  I  +N   ++L     E IL K      
Sbjct: 616 QAEEALKISEKRYRNLINNLHAGVVVHQADTSIALSNTKANELLELTPEQILGKTAFDLH 675

Query: 499 VFLEQNT---PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-- 553
               +       +  + +  ++S         I +   + + ++ L I       S+   
Sbjct: 676 WCFLRENGTVMPIEEYPVNIVISTQKPVKNYVIGINRPQSQTVVWLLINAFGEFNSNGQM 735

Query: 554 --YSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
               +T  DI+E+KQ + +L  +K+     +  
Sbjct: 736 NQIVVTFVDITEFKQAQEELQESKRRYVTLAQA 768



 Score = 74.3 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 24/166 (14%), Positives = 57/166 (34%), Gaps = 15/166 (9%)

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
                  +++ +  ++ +         IL   SD + + + +         V  +FGY  
Sbjct: 252 FAVRGAAELERQQAEKTLRDSQQFYQLILSNISDAVLMTDEQKNFTYVCPNVETIFGYSC 311

Query: 490 EDI-LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
           ++I   K     L +N        + ++ S      +E+     + +  ++ + +    +
Sbjct: 312 QEIQTMKTIEKLLGENLFD-----IGQLESCGEIPNIEQKITDKSGKTHVVLVNVKRVSI 366

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
                Y  T  DI+E KQ +  L  ++    K           ++H
Sbjct: 367 -NEGKYLYTCRDITERKQVEISLRESQDRLAKAQE--------IAH 403



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/297 (10%), Positives = 77/297 (25%), Gaps = 27/297 (9%)

Query: 293 QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLL 351
           +     +    +            + +      +        +     N  Y  P+   +
Sbjct: 247 EILRIFAVRGAAELERQQAEKTLRDSQQFYQLILSNISDAVLMTDEQKNFTYVCPNVETI 306

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411
             Y S  +I+    +  LL           + +       +C         I      + 
Sbjct: 307 FGY-SCQEIQTMKTIEKLL----------GENLFDIGQLESCGEIPNIEQKITDKSGKTH 355

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471
            +                      +  + +  +  +     +L    E    G    N E
Sbjct: 356 VVLVN---VKRVSINEGKYLYTCRDITERKQVEISLRESQDRLAKAQEIAHLG----NWE 408

Query: 472 GIIL----STNRAVSKLFGYPVEDILRKP--FTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
              L      +    ++FG  ++  L     F   L  +   ++   L + L       +
Sbjct: 409 WNFLTHEFFWSDETYRIFGQDIQQFLPTENAFFYCLHPDDRELVIKQLNQALYNHKSYKI 468

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEK 580
               L    E +++  +  +      +      T+ DI++ K  + +L  +++    
Sbjct: 469 NYRILRPDGEIRIVQTQADVSFDSQGNPLGMFGTVQDITDSKLMEQELRESEEKLRH 525


>gi|17228724|ref|NP_485272.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120]
 gi|17130576|dbj|BAB73186.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120]
          Length = 1749

 Score =  375 bits (964), Expect = e-101,   Method: Composition-based stats.
 Identities = 111/741 (14%), Positives = 259/741 (34%), Gaps = 36/741 (4%)

Query: 86   TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN-HIGDLLKRQNTWY 144
             + +D       ++ +  +       +++G  + +            +   ++       
Sbjct: 1024 IYVMDLQNRFILVNRQYEQLFHTTQSEIVGKSVYETWPNDIAHQYAFNNRQVITTGMAIE 1083

Query: 145  GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
             +  +   +G + Y+ I     P+  RN     +   GI               R  K  
Sbjct: 1084 VEEVVPHEDGLHTYLSIKF---PLKDRNGIV--YAMCGISTDITERKLAEDSLLRFHKAM 1138

Query: 205  SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
                +            Y   S Q    +   + + +        +    +     ++  
Sbjct: 1139 ESTSDAIIFGDIFNISNYTNPSFQELYGYNLEQLQAAGGVCTVFQEPQKQQEIMARVMKG 1198

Query: 265  EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
            E  S   +    + + +          +++++ +    +      +     +EG  L   
Sbjct: 1199 E--SWRGEVAMRSRDGSLLQVDLRSDAIRDSNGKIIGTVCIHTDITKRQQVEEGLKLRDR 1256

Query: 325  TVDKCPIPFFVYSHGN----LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
             +D       +         + Y NP+F  +T Y S + I        L  +  +     
Sbjct: 1257 AIDASSNGIIIADASTPNRPIIYVNPAFERMTGYSSDEVIGQNF---RLFQSADIDQLGL 1313

Query: 381  IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
             +   L  + +   A +  L   + +  + L          +Q  +     GI+ +  + 
Sbjct: 1314 RE---LSTAMQAGKACTVILRNYRKDG-SLLWNELNISPVYDQTGQLTHYIGIQTDITER 1369

Query: 441  RINKRKMEIEVMQLCSILEATSDGIAIINREGII--LSTNRAVSKLFGYPVEDILRKP-- 496
            +  +  + +   +L  +L ++   I      G    +  +  ++ + GYP ++       
Sbjct: 1370 KQAETALLVSQQRLQYLLTSSPAVIYTCKTCGDFGSIFVSDNITTITGYPAQEFTENSDF 1429

Query: 497  FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---- 552
            ++  +       +   L+ +L     +  +       K+     +    + +   +    
Sbjct: 1430 WSNHIHPEDAPAILRKLSSVLE---EEIYKLEYRFLHKDGTYHWIYDQGRVVKDDTNNPV 1486

Query: 553  CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
                 + DI++ KQ +  L  A +  ++ S  KS F++  SHE RTPL+ I+  SE +  
Sbjct: 1487 EMVGYLIDITDRKQLEEYLKVALEKEKELSELKSRFVSMTSHEFRTPLSTILSSSE-LLE 1545

Query: 613  QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
                     + + + + I  +   + +++ND+L I K E+GK+     P+ +       +
Sbjct: 1546 HYRHKWTEEKQLTHLHRIQTAVKRMTEMLNDILIIGKAEAGKLEFMPRPLDVVAYCQNLV 1605

Query: 673  SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
              +QL  N +++   +   +       D + +  I +N++SNAI ++P+   + +     
Sbjct: 1606 EEIQLNLNNQQVNFISE--HQSMSCCMDEKLLGHILINLISNAIKYSPANSNVQVKFYCR 1663

Query: 733  SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
                 +  V+D G+G+   ++    + F +  N       GTGLGL + K  VD + G+ 
Sbjct: 1664 DR-CAVFEVQDWGIGIPAEDITHLFESFYRAKNVGN--ILGTGLGLAIVKKCVDIHQGEI 1720

Query: 793  YIFSTPAKGTLIEIIFPLYDT 813
             + S P  GTL  +  PL  +
Sbjct: 1721 SVSSNPEVGTLFTVNIPLKQS 1741



 Score =  177 bits (448), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 64/508 (12%), Positives = 165/508 (32%), Gaps = 34/508 (6%)

Query: 86   TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI-GDLLKRQNTWY 144
             W +D +     +S ++   +G    +++G    D+      +    I    +  Q  + 
Sbjct: 897  VWEVDENAIYTYVSPKVKDILGYEPQELLGRSPLDMMPPTEAERVIKIFTSFMAAQQPFK 956

Query: 145  -GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
              + T    +G  + +  + + +P++    +F G+RG           +      +  ++
Sbjct: 957  CLENTNVRKDGCLVVL--ETSGVPVFDAEGKFCGYRGMD--RDITARKEVETNLYQTQQQ 1012

Query: 204  FSHLHEIKKGHSSVEKEKYDIFSQQ---SPPPHLRMKNKVSSLTEYYAHKDDV-LKTEKY 259
               + +       V   +              H      V          D         
Sbjct: 1013 LQVILDNSPAIIYVMDLQNRFILVNRQYEQLFHTTQSEIVGKSVYETWPNDIAHQYAFNN 1072

Query: 260  PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
              + +   ++  +E     +   +T       L++ +   +         +     ++  
Sbjct: 1073 RQVITTGMAIEVEEVVPHEDG-LHTYLSIKFPLKDRNGIVYAMCGISTDITERKLAEDSL 1131

Query: 320  NLTPETVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
                + ++            N+  Y NPSF  L  Y +++ ++ AGG+ T+   P+    
Sbjct: 1132 LRFHKAMESTSDAIIFGDIFNISNYTNPSFQELYGY-NLEQLQAAGGVCTVFQEPQ---- 1186

Query: 379  NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
               + +M                 ++    + L +        +   + +    I  +  
Sbjct: 1187 -KQQEIMARVMKGESWRGEV---AMRSRDGSLLQVDLRSDAIRDSNGKIIGTVCIHTDIT 1242

Query: 439  DTRINKRKMEIEVMQLCSILEATSDGIAIINRE--GI-ILSTNRAVSKLFGYPVEDILRK 495
              +  +  +++        ++A+S+GI I +       I+  N A  ++ GY  ++++ +
Sbjct: 1243 KRQQVEEGLKLRDR----AIDASSNGIIIADASTPNRPIIYVNPAFERMTGYSSDEVIGQ 1298

Query: 496  PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-- 553
             F +F   +   +    L+  +      T+  I     K+  LL   + I  +   +   
Sbjct: 1299 NFRLFQSADIDQLGLRELSTAMQAGKACTV--ILRNYRKDGSLLWNELNISPVYDQTGQL 1356

Query: 554  --YSLTMHDISEWKQEKNKLSHAKKIAE 579
              Y     DI+E KQ +  L  +++  +
Sbjct: 1357 THYIGIQTDITERKQAETALLVSQQRLQ 1384



 Score =  146 bits (368), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 59/569 (10%), Positives = 135/569 (23%), Gaps = 66/569 (11%)

Query: 70   SENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP 129
            SE  F F       +  W     GY++ +++   +  GN    ++G +            
Sbjct: 588  SEERFRFLAESIPQQ-VWIAQPDGYIEYVNQRTLEYFGNEPESILGWKWQQWIHPDDRPH 646

Query: 130  NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRV 189
               I                W       Y      AL +            FG       
Sbjct: 647  CLEIWQHCVATGEPLDVEFRWLRTTDQTYRWHIGRALALRDSQGNII--NWFGTNTDIDD 704

Query: 190  DNDPRALG--KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247
                      +     F    +     S   ++     +            ++  L +  
Sbjct: 705  RKQTEEALAERVKLSDFRSEVDTILTQSYTLQDLMRGSADAVVKHLNAAFARIWILNKQE 764

Query: 248  AHKDDVLKTEKYPLLTSEESSLP----------------------------------EQE 273
               +  + + +Y  L      +P                                  ++ 
Sbjct: 765  NLLELQVSSGRYTHLDGSHRCIPVGQCKIGLIAQVGKPHLTNCVQTDPLISNPEWVKQEG 824

Query: 274  DFHTINLNQYTKKQYFGTL-----QNNSKESFEYLSHRN--------HPSLSAYFDEGEN 320
                       + +  G +     Q  S+  F+ L                 A     E 
Sbjct: 825  MVAFAGYPLIVENETLGVIAMFSCQALSESHFQALGIAANQIAIGIKRQQTEAALRHSEE 884

Query: 321  LTPETVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
                 V+      +      +  Y +P    +  Y+  + +  +                
Sbjct: 885  RFRNLVETSSDWVWEVDENAIYTYVSPKVKDILGYEPQELLGRSP------LDMMPPTEA 938

Query: 380  AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
                 +               +T        + +        +   +     G++ +   
Sbjct: 939  ERVIKIFTSFMAAQQPFKCLENTNVRKDGCLVVLETSGVPVFDAEGKFCGYRGMDRDITA 998

Query: 440  TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
             +  +  +     QL  IL+ +   I +++ +   +  NR   +LF     +I+ K    
Sbjct: 999  RKEVETNLYQTQQQLQVILDNSPAIIYVMDLQNRFILVNRQYEQLFHTTQSEIVGKSVYE 1058

Query: 500  FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS---- 555
                +          ++++  +   +E   +   ++     L I    L   +       
Sbjct: 1059 TWPNDIAHQYAFNNRQVITTGMA--IEVEEVVPHEDGLHTYLSIKF-PLKDRNGIVYAMC 1115

Query: 556  LTMHDISEWKQEKNKLSHAKKIAEKESSH 584
                DI+E K  ++ L    K  E  S  
Sbjct: 1116 GISTDITERKLAEDSLLRFHKAMESTSDA 1144



 Score =  145 bits (366), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 52/529 (9%), Positives = 134/529 (25%), Gaps = 62/529 (11%)

Query: 96  KEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPIEG 154
              +    +  G+   + IG    +      +    +           +  +  L  + G
Sbjct: 193 IFFNNAWLELTGSTLEQEIGKNWSERVHPEDLQGFLDAYLQAFYTHQFFSVEYRLLGLNG 252

Query: 155 TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214
              Y+ +    +P ++ N +F+G+    I           A  +    +     E     
Sbjct: 253 E--YLWLLNIGVPKFTSNGDFAGYINSCI--DITEHKQYFAALEESTNRLKLALEATNTI 308

Query: 215 SSVEKEKYDIFSQQSPPPHLRMKNKVS---SLTEYYAHKDDVLKTEKYPLLTS------- 264
                   D     +P         ++    L  ++    + + T     + +       
Sbjct: 309 YWERNLSNDQLFFLNPVVEFGDSEGLTNSKVLAFFHPEDRERVDTAAQEAIANCSCLEIE 368

Query: 265 ----------------------------EESSLPEQEDFHTINLNQYTKKQYFGTLQNNS 296
                                           +    D       Q   +Q    L+   
Sbjct: 369 HRLPVAGQPSKYKWFLSKSTVLTDTTGKPSRMIGISTDITDRVEAQDALEQANQELERRV 428

Query: 297 KESFEYLS---------HRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANP 346
            +    L            +         + + +    +D  P    +   +      N 
Sbjct: 429 AKRTLALQKANRQLLAEISDRQIAQEQLRQSQQMLQLVMDTIPHSVFWKDRNSVFLGCNR 488

Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
           +F ++  Y+  +++         L  P+ +D        +  ++         +  +   
Sbjct: 489 NFAIMVGYEHPENLIGKTDYD-FLPDPRNADLYRQCDARIIETNNPEYHI---IEPMLAP 544

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
               + +        +     +   G   +  + +  +  +E    +   + E+    + 
Sbjct: 545 DGQQIWLETNKVPLHDPEGNVVGVLGTFEDITERKQVQEALEKSEERFRFLAESIPQQVW 604

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
           I   +G I   N+   + FG   E IL   +  ++  +            ++      +E
Sbjct: 605 IAQPDGYIEYVNQRTLEYFGNEPESILGWKWQQWIHPDDRPHCLEIWQHCVATGEPLDVE 664

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKL 571
                 T ++           L  S      +  T  DI + KQ +  L
Sbjct: 665 F-RWLRTTDQTYRWHIGRALALRDSQGNIINWFGTNTDIDDRKQTEEAL 712



 Score =  134 bits (336), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 50/553 (9%), Positives = 138/553 (24%), Gaps = 58/553 (10%)

Query: 79   IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFK-MIGMRLCDVSD-ILHIDPNNH-IGD 135
                    W  D +      +      +G    + +IG    D      + D        
Sbjct: 468  DTIPHSVFWK-DRNSVFLGCNRNFAIMVGYEHPENLIGKTDYDFLPDPRNADLYRQCDAR 526

Query: 136  LLKRQNTWYGK-TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR 194
            +++  N  Y     +   +G    + ++   +P++       G  G             +
Sbjct: 527  IIETNNPEYHIIEPMLAPDG--QQIWLETNKVPLHDPEGNVVGVLG--TFEDITERKQVQ 582

Query: 195  ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKD 251
               ++ +++F  L E       + +    I               ++ +    + + H D
Sbjct: 583  EALEKSEERFRFLAESIPQQVWIAQPDGYIEYVNQRTLEYFGNEPESILGWKWQQWIHPD 642

Query: 252  DV--LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
            D           + + E    E     T +            L+++      +       
Sbjct: 643  DRPHCLEIWQHCVATGEPLDVEFRWLRTTDQTYRWHIGRALALRDSQGNIINWFGTNTDI 702

Query: 310  SLSAYFDEGENLTPETVD-------------KCPIPFFVYSHGNLFYANPSFLLLTKYKS 356
                  +E      +  D                      +   + + N +F  +     
Sbjct: 703  DDRKQTEEALAERVKLSDFRSEVDTILTQSYTLQDLMRGSADAVVKHLNAAFARIWILNK 762

Query: 357  VDDIEIAGGLSTLLDA-PKLSDNNAIKPVML-------------------------YRSD 390
             +++      S              +    +                         +   
Sbjct: 763  QENLLELQVSSGRYTHLDGSHRCIPVGQCKIGLIAQVGKPHLTNCVQTDPLISNPEWVKQ 822

Query: 391  RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450
               +A +     ++      +AM        + F             +  +  +  +   
Sbjct: 823  EGMVAFAGYPLIVENETLGVIAMFSCQALSESHFQALGIAANQIAIGIKRQQTEAALRHS 882

Query: 451  VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
              +  +++E +SD +  ++   I    +  V  + GY  +++L +     +       + 
Sbjct: 883  EERFRNLVETSSDWVWEVDENAIYTYVSPKVKDILGYEPQELLGRSPLDMMPPTEAERVI 942

Query: 511  HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQ 566
               T  ++               K+  L+ L      +  +      Y     DI+  K+
Sbjct: 943  KIFTSFMAAQQP-FKCLENTNVRKDGCLVVLETSGVPVFDAEGKFCGYRGMDRDITARKE 1001

Query: 567  EKNKLSHAKKIAE 579
             +  L   ++  +
Sbjct: 1002 VETNLYQTQQQLQ 1014



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 49/453 (10%), Positives = 122/453 (26%), Gaps = 72/453 (15%)

Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAH 249
           P+   +  +K    +         +           +         ++ ++        H
Sbjct: 161 PQDAIEASEKSLWRVANTAPILIWISATDTSCIFFNNAWLELTGSTLEQEIGKNWSERVH 220

Query: 250 KDDVLKTEKYPLLTS-EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
            +D+       L           +     +N               ++ +   Y++    
Sbjct: 221 PEDLQGFLDAYLQAFYTHQFFSVEYRLLGLNGEYLWLLNIGVPKFTSNGDFAGYINSCID 280

Query: 309 PSLS----AYFDEGENLTPETVDKCPIPFFV--YSHGNLFYANPSFLLLTKYKSVDDIEI 362
            +      A  +E  N     ++     ++    S+  LF+ NP    + ++   + +  
Sbjct: 281 ITEHKQYFAALEESTNRLKLALEATNTIYWERNLSNDQLFFLNP----VVEFGDSEGLTN 336

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
           +  L+      +   + A +      ++ +C+    RL  +                  +
Sbjct: 337 SKVLAFFHPEDRERVDTAAQE---AIANCSCLEIEHRL-PVAGQPSKYKWFLSKSTVLTD 392

Query: 423 QFPENMPQNGIEPEDVDT---------------------------------------RIN 443
              +     GI  +  D                                        +I 
Sbjct: 393 TTGKPSRMIGISTDITDRVEAQDALEQANQELERRVAKRTLALQKANRQLLAEISDRQIA 452

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRKPFTVFLE 502
           + ++      L  +++     +   +R  + L  NR  + + GY   E+++ K    FL 
Sbjct: 453 QEQLRQSQQMLQLVMDTIPHSVFWKDRNSVFLGCNRNFAIMVGYEHPENLIGKTDYDFLP 512

Query: 503 -QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLT 557
                 +       I+  +  +      +    + + + L      L            T
Sbjct: 513 DPRNADLYRQCDARIIETNNPEYHIIEPML-APDGQQIWLETNKVPLHDPEGNVVGVLGT 571

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
             DI+E KQ +  L        ++S  +  FLA
Sbjct: 572 FEDITERKQVQEAL--------EKSEERFRFLA 596



 Score = 74.7 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 41/336 (12%), Positives = 91/336 (27%), Gaps = 37/336 (11%)

Query: 314 YFDEGENLTPETVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
             +  E       +  PI  ++ +      + N ++L LT   +++          +   
Sbjct: 164 AIEASEKSLWRVANTAPILIWISATDTSCIFFNNAWLELTG-STLEQEIGKNWSERVHPE 222

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
                 +A              +   RL  +       L +  I   K     +      
Sbjct: 223 DLQGFLDAYLQAFYTH---QFFSVEYRLLGL---NGEYLWLLNIGVPKFTSNGDFAGYIN 276

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVED 491
              +  + +     +E    +L   LEAT+      N     +   N  V   FG   E 
Sbjct: 277 SCIDITEHKQYFAALEESTNRLKLALEATNTIYWERNLSNDQLFFLNPVVE--FG-DSEG 333

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
           +       F        ++    E ++      +E     + +  K          L  +
Sbjct: 334 LTNSKVLAFFHPEDRERVDTAAQEAIANCSCLEIEHRLPVAGQPSKYKWFLSKSTVLTDT 393

Query: 552 SC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
           +           DI++  + ++ L  A +  E+  + ++                     
Sbjct: 394 TGKPSRMIGISTDITDRVEAQDALEQANQELERRVAKRT------------------LAL 435

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
           +    Q    + +    + A    R    +L +V D
Sbjct: 436 QKANRQLLAEISD---RQIAQEQLRQSQQMLQLVMD 468



 Score = 61.2 bits (147), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 61/200 (30%), Gaps = 12/200 (6%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
           +  +E     L  +       I I   +   +  N A  +L G  +E  + K ++  +  
Sbjct: 162 QDAIEASEKSLWRVANTAPILIWISATDTSCIFFNNAWLELTGSTLEQEIGKNWSERVHP 221

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK----LPFSSCYSLTMH 559
                      +        ++E   LG     + L L  I           + Y  +  
Sbjct: 222 EDLQGFLDAYLQAFYTHQFFSVEYRLLGL--NGEYLWLLNIGVPKFTSNGDFAGYINSCI 279

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFL--ARVSHE---IRTPLTAIIGFSEVIKNQR 614
           DI+E KQ    L  +    +      +       +S++      P+    G SE + N +
Sbjct: 280 DITEHKQYFAALEESTNRLKLALEATNTIYWERNLSNDQLFFLNPV-VEFGDSEGLTNSK 338

Query: 615 FGPLGNPRYIEYANYIDRSG 634
                +P   E  +   +  
Sbjct: 339 VLAFFHPEDRERVDTAAQEA 358


>gi|186683187|ref|YP_001866383.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186465639|gb|ACC81440.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 1416

 Score =  375 bits (964), Expect = e-101,   Method: Composition-based stats.
 Identities = 109/641 (17%), Positives = 232/641 (36%), Gaps = 40/641 (6%)

Query: 187  NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY 246
               ++D R   KRL  +   +  +  G ++++  +  +         +   +    L E 
Sbjct: 648  ADDNSDMRDYVKRLLSQQYEVESVADGLAALDSARGRVPDLVLTDVMMPGLDGFGLLQEL 707

Query: 247  YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL--- 303
             A+              + E +  E  +    +             +  +     +L   
Sbjct: 708  RANPQTKKVPIILLSARAGEEARVEGLEAGADDYLIKPFSARELLARVEAALKMAHLREE 767

Query: 304  SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEI 362
            + +    L    +  +      +      FFV     +  + N     +   +  + ++ 
Sbjct: 768  AMQREQGLRIEAEVAKAHLETVLAGIQDQFFVLDREWHYTFVNDRVAEVVGIQKEELLDR 827

Query: 363  AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS-ARLHTIQWNRENSLAMTFIPFEKA 421
               +  L   P ++ +     V    +++T +          +W                
Sbjct: 828  I--IWELF--PDVAKSEFYTQVHRAMAEQTVVQFEYFYPAWQRWFENRVY---------- 873

Query: 422  NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
               P     +    E  D +  ++ +     Q  ++ +     + + +        +R+ 
Sbjct: 874  ---PFGEGVSIFVTEISDRKQAEKALRESEEQFRNMADNAPFMVWVTDTNNYCTYLSRSW 930

Query: 482  SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
                G+  E  L   +   +       + +    + +    +          K+ +    
Sbjct: 931  YDFTGHNEETSLGFGWLNAVHPEDCDEVRNIF--LEASKRCEAFRMEYRLHRKDGEYRWT 988

Query: 542  RIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSH-------AKKIAEKESSHKSDFLA 590
                            Y  ++ DI+E K  + +          A+  AE  +  K +FLA
Sbjct: 989  INAANPWFGVDGQFKGYIGSVIDITERKTAEAERDRLLELEQVARTEAETANRIKDEFLA 1048

Query: 591  RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650
             +SHE+R+PL  I+G++ +++ + F P       +    I+R+  L   ++ DLLD+S+I
Sbjct: 1049 VLSHELRSPLNPILGWARLLQTREFQP---AEIKKAIATIERNAKLQAQLIEDLLDVSRI 1105

Query: 651  ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710
              GK+NL   PV+L   +   +  V+L A  K I I+T    ++ ++L D   ++Q+  N
Sbjct: 1106 LQGKLNLKMFPVNLVLVIEAGLETVRLAAEAKDIQIQTMLDASLGQVLGDSDRLQQVIWN 1165

Query: 711  ILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
            +LSNA+ FTP  G+I I      + +  + V DTG G++   L    + F Q   +   R
Sbjct: 1166 LLSNAVKFTPEEGKINIQLERIDS-QAQITVSDTGKGISPEFLPHVFEYFRQADGTTTRR 1224

Query: 771  GEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFPL 810
              G GLGL + + +++ + G  +  S    +G +  +  PL
Sbjct: 1225 FGGLGLGLAIVRHLIELHGGTIWAESLGEGQGAIFRVRLPL 1265



 Score =  263 bits (672), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 102/569 (17%), Positives = 195/569 (34%), Gaps = 61/569 (10%)

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLF-YANPSFLLLTKYK 355
               E+   ++    +  + +        +  C  P FV+    L    N  +  +   K
Sbjct: 24  ARMREWDWSKSSLGPTQQWPQSLKTAVRIMLTCRQPMFVWWGEELINLYNDPYKAIIGGK 83

Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
             + +      S +            +  ML        A    +    +  E     ++
Sbjct: 84  HPEALGQP--ASCVWREIWDQIGPRAESAMLKNEGTYDEALLLIMERNGYPEETYYTFSY 141

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKR------KMEIEVMQLCSI----------LE 459
            P    N   +         +D    I +R      ++        +           LE
Sbjct: 142 SPVP--NDQGDTGGIICANTDDTQRIIGERQLALLRELAARTADARTFDQACTLSANCLE 199

Query: 460 ATS-----DGIAIINREGIILST--------NR-AVSKLFGYPVEDILRKPFTVFLEQNT 505
           +         I +++ +   +          N  A  +      + +   PF   + +  
Sbjct: 200 SNPYDLPFAMIYLVDPDEQQVFLTGTCRIGQNHVAAPETVDLDSDCVW--PFAEVI-ETH 256

Query: 506 PSVMNHYLTEILSLDLRQTLEKITL----------GSTKEEKLLSLRIIIKKLPFSSCYS 555
            + +   L    S       E+             G T +  +L   +   +L   +   
Sbjct: 257 QAKLISDLEVSFSSLPCGIWERSPHQAIAVPIAPSGQTGKAGILIAGLNPFRLFDDN--Y 314

Query: 556 LTMHDISEWK--------QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
               D+   +        Q   +     +   +    K+ F + VSHE RTPLT ++G  
Sbjct: 315 KRFIDLVAAQIAASIANAQAYEEERKRAEALAELDRAKTVFFSNVSHEFRTPLTLMLGPL 374

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
           E         L      E    + R+G  +L +VN LLD S+IE+G++   +EP +L   
Sbjct: 375 EETLANC-ATLLPAHEREQLEMVQRNGLRLLKLVNSLLDFSRIEAGRVQASYEPTNLATF 433

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727
            +E  S+ +       + +  +  +    +  D    ++I LN+LSNA  FT +G +I +
Sbjct: 434 TAELASVFRSAVERAGMELSVNCPSLPAPVYVDREMWEKIVLNLLSNAFKFTMTG-KIAV 492

Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
           S    +N+ +   V+DTG+G+   E+    K F ++  +Q    EG+G+GL L + +V  
Sbjct: 493 SLQW-ANDHIEFAVKDTGIGIPAEEIPHLFKRFHRVKGAQGRTFEGSGIGLSLVQELVQM 551

Query: 788 NMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           + G   + S    G+   I  P      P
Sbjct: 552 HGGTVKVTSVLGAGSCFTISIPTGYAHLP 580



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 45/370 (12%), Positives = 89/370 (24%), Gaps = 17/370 (4%)

Query: 55   TDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI 114
            T+ +    +     +SE  F            W  D + Y   +S       G+     +
Sbjct: 884  TEISDRKQAEKALRESEEQFRNMADNAPF-MVWVTDTNNYCTYLSRSWYDFTGHNEETSL 942

Query: 115  GMRLCDVSDILHIDPNNHI-GDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNR 173
            G    +       D   +I  +  KR   +  +  L   +G   Y     AA P +  + 
Sbjct: 943  GFGWLNAVHPEDCDEVRNIFLEASKRCEAFRMEYRLHRKDGE--YRWTINAANPWFGVDG 1000

Query: 174  EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH 233
            +F G+ G  I           A   RL +         +  + ++ E   + S +   P 
Sbjct: 1001 QFKGYIGSVI--DITERKTAEAERDRLLELEQVARTEAETANRIKDEFLAVLSHELRSPL 1058

Query: 234  LRMKN-----KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288
              +       +          K          L       L +        LN       
Sbjct: 1059 NPILGWARLLQTREFQPAEIKKAIATIERNAKLQAQLIEDLLDVSRILQGKLNLKMFPVN 1118

Query: 289  FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYA---- 344
               +     E+    +      +    D          D+     +      + +     
Sbjct: 1119 LVLVIEAGLETVRLAAEAKDIQIQTMLDASLGQVLGDSDRLQQVIWNLLSNAVKFTPEEG 1178

Query: 345  --NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT 402
              N     +     +   +   G+S                    R     +  +   H 
Sbjct: 1179 KINIQLERIDSQAQITVSDTGKGISPEFLPHVFEYFRQADGTTTRRFGGLGLGLAIVRHL 1238

Query: 403  IQWNRENSLA 412
            I+ +     A
Sbjct: 1239 IELHGGTIWA 1248



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 32/378 (8%), Positives = 93/378 (24%), Gaps = 34/378 (8%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147
            +D   +   +++ + + +G    +++   + ++   +        +   +  + T     
Sbjct: 800  LDREWHYTFVNDRVAEVVGIQKEELLDRIIWELFPDVAKSEFYTQVHRAMA-EQTVVQFE 858

Query: 148  TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
              +P          +    P         G   F  V             +  +++F ++
Sbjct: 859  YFYP----AWQRWFENRVYPFG------EGVSIF--VTEISDRKQAEKALRESEEQFRNM 906

Query: 208  HEIKKGHSSVEKE----KYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
             +       V        Y   S      H    +           +D       +   +
Sbjct: 907  ADNAPFMVWVTDTNNYCTYLSRSWYDFTGHNEETSLGFGWLNAVHPEDCDEVRNIFLEAS 966

Query: 264  SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
                +   +   H  +                  +   Y+      +     +   +   
Sbjct: 967  KRCEAFRMEYRLHRKDGEYRWTINAANPWFGVDGQFKGYIGSVIDITERKTAEAERDRLL 1026

Query: 324  ETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
            E                       FL +  ++    +    G + LL   +       K 
Sbjct: 1027 ELEQ-----VARTEAETANRIKDEFLAVLSHELRSPLNPILGWARLLQTREFQPAEIKKA 1081

Query: 384  VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
            +         I  +A+L            +      +     +  P N +   +      
Sbjct: 1082 IA-------TIERNAKLQAQLIED----LLDVSRILQGKLNLKMFPVNLVLVIEAGLETV 1130

Query: 444  KRKMEIEVMQLCSILEAT 461
            +   E + +Q+ ++L+A+
Sbjct: 1131 RLAAEAKDIQIQTMLDAS 1148



 Score = 39.2 bits (90), Expect = 3.1,   Method: Composition-based stats.
 Identities = 42/398 (10%), Positives = 98/398 (24%), Gaps = 35/398 (8%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMR----LCDVSDILHIDPNNHIGDLLKRQ 140
           F W       +   ++     IG    + +G        ++ D +          +LK +
Sbjct: 61  FVWW--GEELINLYNDPYKAIIGGKHPEALGQPASCVWREIWDQIGPRAE---SAMLKNE 115

Query: 141 NTW-YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199
            T+      +    G         +  P+ +   +  G     I+  N  D       ++
Sbjct: 116 GTYDEALLLIMERNGYPEETYYTFSYSPVPNDQGDTGG-----IICANTDDTQRIIGERQ 170

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE--YYAHKDDVLKTE 257
           L      L        + ++      +     P+      +  +             +  
Sbjct: 171 LA-LLRELAARTADARTFDQACTLSANCLESNPYDLPFAMIYLVDPDEQQVFLTGTCRIG 229

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ----NNSKESFEYLSHRNHPSLSA 313
           +  +   E   L     +    + +  + +    L+    +     +E   H+      A
Sbjct: 230 QNHVAAPETVDLDSDCVWPFAEVIETHQAKLISDLEVSFSSLPCGIWERSPHQAIAVPIA 289

Query: 314 YFDEGENLTPETVDKCPIPFFVYSHGNLFY----------ANPSFLLLTKYKSVDDIEIA 363
              +            P   F  ++               AN       + K  + +   
Sbjct: 290 PSGQTGKAGILIAGLNPFRLFDDNYKRFIDLVAAQIAASIANAQAYEE-ERKRAEALAEL 348

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
               T+  +    +      +ML       +A  A L      RE    +          
Sbjct: 349 DRAKTVFFSNVSHEFRTPLTLML-GPLEETLANCATLLPAH-EREQLEMVQRNGLRLLKL 406

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
               +  + IE   V        +     +L S+  + 
Sbjct: 407 VNSLLDFSRIEAGRVQASYEPTNLATFTAELASVFRSA 444


>gi|144899595|emb|CAM76459.1| sensory transduction histidine kinase [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 565

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 122/571 (21%), Positives = 228/571 (39%), Gaps = 40/571 (7%)

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
            L  +            +     ++       Q  +  S + L             E E 
Sbjct: 5   RLRIKPGPESVPFKRRAVLSRLRSRISELELAQKEANASRDALMATTR-----ALRESEE 59

Query: 321 LTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
                +       + ++      Y +   L +  +      E     S         D+ 
Sbjct: 60  RYALAMRGPNEGLWDWNPITKELYLSARLLAILGFSG----ETVRTTSHDWLKMVHPDDR 115

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
                 L +  +         + ++        +        ++        G   +  D
Sbjct: 116 VPYQSTLVQHLKGQTDHFECEYRVRGRNGEYRWILSRGLAVRDENGVATRMVGSIGDVTD 175

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
            +  +  +     +  S++EA +  I ++  +G +   NR   ++FG      + + ++ 
Sbjct: 176 RKRREAVLRASEARFRSLVEAAASIIVVVGADGRVREFNREAERMFGLSAAAAIGRAWST 235

Query: 500 FLE----QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555
            L+           + +L E+      Q  ++ T+      + + +   +  L       
Sbjct: 236 ILDSNRVGQDGDRFDQWLDEVRKG--WQVRDRETVL----GQHI-ISWNLAPLSDDDGIV 288

Query: 556 LTMHDISEWKQEKNKLSHAK------------------KIAEKESSHKSDFLARVSHEIR 597
           +   DI++ ++ +  L  A                   + AE+ +  KS+FLA +SHE+R
Sbjct: 289 IVGQDITQRRRAETALRQANDLLEYRVAARTAEAEAACRQAEEANRGKSEFLANMSHELR 348

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TPL AIIGFS+ ++    GP+ NP Y EY   I  SG  +L I+ND+LD+SK+E+G  +L
Sbjct: 349 TPLNAIIGFSDAMRLGVMGPVENPLYAEYVQAIWESGTHLLSIINDVLDLSKVEAGHFDL 408

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
             E + L     + I L+   A   R+ +R     +    L D   +KQ+  N+L+NA+ 
Sbjct: 409 APERLPLTPLAEQVIRLMAEKAMRHRLELRLQVDGDPGHALVDPLRLKQVLFNLLANAVK 468

Query: 718 FTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
           FTP+GG +I+S          ++V D+G+GM   ++++ ++PF QI +    R  GTGLG
Sbjct: 469 FTPAGGHVILSLGRDDGGSW-IKVADSGIGMRPEDIDRVLEPFVQIDSHLSRRNMGTGLG 527

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           LPLAK  ++ + G   + S P +GT++ I  
Sbjct: 528 LPLAKRFIELHGGTLALASQPGQGTVVTIRL 558



 Score = 45.8 bits (107), Expect = 0.030,   Method: Composition-based stats.
 Identities = 20/139 (14%), Positives = 40/139 (28%), Gaps = 12/139 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           + A G ++E + E  +  G  A   IG     + D   +  +        R + W  +  
Sbjct: 204 VGADGRVREFNREAERMFGLSAAAAIGRAWSTILDSNRVGQDG------DRFDQWLDEVR 257

Query: 149 L-WPIEGTNLYV---PIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
             W +      +    I     P+   +       G  I    R +   R     L+ + 
Sbjct: 258 KGWQVRDRETVLGQHIISWNLAPLSDDDGIVI--VGQDITQRRRAETALRQANDLLEYRV 315

Query: 205 SHLHEIKKGHSSVEKEKYD 223
           +      +      +E   
Sbjct: 316 AARTAEAEAACRQAEEANR 334


>gi|182677673|ref|YP_001831819.1| PAS/PAC sensor signal transduction histidine kinase [Beijerinckia
           indica subsp. indica ATCC 9039]
 gi|182633556|gb|ACB94330.1| PAS/PAC sensor signal transduction histidine kinase [Beijerinckia
           indica subsp. indica ATCC 9039]
          Length = 728

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 184/730 (25%), Positives = 317/730 (43%), Gaps = 70/730 (9%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD-LLKRQNTWYGKTTLWPIE 153
           +   S+ +    G  A +++  R    +D         + +       +       + + 
Sbjct: 48  VAFASQAMLDLFGVTALEILRHRFFQPADPGF----GRLAEIAADATQSLRLARLRFFVN 103

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
           G ++        L                      +  + +A   RL  +       +  
Sbjct: 104 GKSIVRTFWCGTLERQG--------------RRMTLIAEAQAYRSRLVLQQQARPRQEPV 149

Query: 214 HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE 273
            + +     D  +        R   +   L   +    +    E   LL      LPE+ 
Sbjct: 150 VALLADPLPDDMAIVRADLARRFPGER-PLRFLWRTDGEHRLVEIGSLLAEVTGLLPEKW 208

Query: 274 DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF 333
                +           T+ +    + E +   +   L+   +         +   P   
Sbjct: 209 VGGPFSSLLRAFDPTAATMTDWIFAACEGV---DDLKLAWPIEGRTVAVDIALGGLPR-- 263

Query: 334 FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393
                      N +            +     L+  L  P+  +             +  
Sbjct: 264 ------RDAAGNFAGYQGFG------LIHKDRLTARLLEPQEEEEG-----------QAL 300

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
               A    +    E         F + ++  +   +              R  E EV +
Sbjct: 301 SPVLAETRGVIDAGEP-----VSAFPRTDETAQGPVEGERAARQALEARMHRY-ESEVRE 354

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
           L +IL+  +DG+A+++ EG IL+ NR+   LFGY   ++L +PFT+ +   +      Y 
Sbjct: 355 LHAILDTATDGVAVLDAEGRILTLNRSGEALFGYDRGEVLSQPFTMLIAPASRRRAMDYF 414

Query: 514 TEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLP--------FSSC----YSLTMH 559
             + +  +   L   +   G  ++   + + + + ++                 Y + + 
Sbjct: 415 EGVKTGGVLSLLNDGREIFGLARQGGTIPIFMTLGRIGLFVTAETMPEQGVFEKYCVLLR 474

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           D+S WK+ + +L  A+K AE+ S+ KSDFLA+VSHEIRTPL AI+GF+EVI ++RFGP+G
Sbjct: 475 DMSHWKKIERELEAARKEAERASTLKSDFLAKVSHEIRTPLNAILGFTEVIMDERFGPIG 534

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
           N RY +Y   I  SG LV+ +VNDLLD+SKIE+GKM+L F  V  ++ +++ +SL+Q  A
Sbjct: 535 NERYKDYLKDIHMSGTLVMSLVNDLLDLSKIEAGKMDLDFVAVDTNQIIADCVSLMQPQA 594

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
           N + IL+R + A  +P +LAD RS++QI LN+LSNA+ FT  GGQ++++T    + + ++
Sbjct: 595 NREGILVRLALAPALPPLLADERSLRQIVLNLLSNAVKFTEPGGQVMVATKLMEDGKTLI 654

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
           R+RDTG GM+  E+  A++PF Q+  S     +GTGLGLPL KA+V+AN   F I S   
Sbjct: 655 RIRDTGAGMSEEEIGIALEPFRQL--STSRSNQGTGLGLPLTKALVEANRASFSISSKKQ 712

Query: 800 KGTLIEIIFP 809
           +GT++EI+FP
Sbjct: 713 EGTVVEILFP 722



 Score =  116 bits (291), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 48/349 (13%), Positives = 98/349 (28%), Gaps = 7/349 (2%)

Query: 49  FEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGN 108
             Q        + + +   +   +     P  R +RF W  D    L EI   L +  G 
Sbjct: 144 PRQEPVVALLADPLPDDMAIVRADLARRFPGERPLRFLWRTDGEHRLVEIGSLLAEVTGL 203

Query: 109 YAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPI 168
              K +G     +              +             WPIEG  + V I L  LP 
Sbjct: 204 LPEKWVGGPFSSLLRAFDPTAATMTDWIFAACEGVDDLKLAWPIEGRTVAVDIALGGLPR 263

Query: 169 YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH--LHEIKKGHSSVEKEKYDIFS 226
                 F+G++GFG++H +R+        +  + +     L E +    + E       +
Sbjct: 264 RDAAGNFAGYQGFGLIHKDRLTARLLEPQEEEEGQALSPVLAETRGVIDAGEPVSAFPRT 323

Query: 227 QQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKK 286
            ++    +  +       E   H+ +    E + +L +    +   +    I     + +
Sbjct: 324 DETAQGPVEGERAARQALEARMHRYESEVRELHAILDTATDGVAVLDAEGRILTLNRSGE 383

Query: 287 QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP---FFVYSHGNLFY 343
             FG  +         +         A        T   +         F +   G    
Sbjct: 384 ALFGYDRGEVLSQPFTMLIAPASRRRAMDYFEGVKTGGVLSLLNDGREIFGLARQGGTIP 443

Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTL--LDAPKLSDNNAIKPVMLYRSD 390
              +   +  + + + +   G       L           + +   R +
Sbjct: 444 IFMTLGRIGLFVTAETMPEQGVFEKYCVLLRDMSHWKKIERELEAARKE 492


>gi|20093164|ref|NP_619239.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
 gi|19918507|gb|AAM07719.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
          Length = 1028

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 120/399 (30%), Positives = 199/399 (49%), Gaps = 9/399 (2%)

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDT-RINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
           F          E           +D  R+N  K++ +  +   IL + S+ +  ++ E  
Sbjct: 319 FSAHCIMEGDDELSRLTEGINRMLDRLRLNSDKVKAQEHEKKVILNSLSELVIFMDLELK 378

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
           I+  NRA     G  +E+I+   +      +          + L     +T E +    T
Sbjct: 379 IVWANRASLDYAGLKLENIVGHSYEKLSPISDAVSGRALAQKALESGNEETGEVV----T 434

Query: 534 KEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
            + K+ ++R+ + K        +  T  DI+  ++ + KL  AK  AE  S  KS+FLA 
Sbjct: 435 PDGKIWTIRMNLIKDEDGKVTGFLQTGLDITAHRRSEEKLLQAKLEAEAASCTKSEFLAN 494

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           +SHE+RTPL +IIGFS+++  + FG L N + ++Y N I  SG  +L ++ND+LD+SK+E
Sbjct: 495 MSHELRTPLNSIIGFSDILIERVFGEL-NEKQLKYVNNISGSGKHLLGLINDILDLSKVE 553

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
           +GKM+LH+   ++D    E  S +   A  K + I      +   I AD   + QI  N+
Sbjct: 554 AGKMDLHYSEFTVDSVFEEVKSTLFPLAQAKSLEINFVVGPDFGDIQADRSRLIQILYNL 613

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           +SNAI FTP GG++ +    +     +  V DTG+G+++ + +K  +PF QI +S   + 
Sbjct: 614 VSNAIKFTPEGGRVSVYCKKS-GSRALFSVTDTGIGISSEDQKKLFQPFTQIDSSSARQY 672

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            GTGLGL L K +V+ + G  ++ S   KG+      PL
Sbjct: 673 CGTGLGLALVKKIVNLHKGDIWVESELEKGSTFMFTIPL 711



 Score = 45.8 bits (107), Expect = 0.031,   Method: Composition-based stats.
 Identities = 15/138 (10%), Positives = 36/138 (26%), Gaps = 9/138 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD-LLKRQNTWYGKT 147
           +D    +   +       G     ++G     +S I        +    L+  N   G+ 
Sbjct: 373 MDLELKIVWANRASLDYAGLKLENIVGHSYEKLSPISDAVSGRALAQKALESGNEETGEV 432

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                +G    + ++L    I   + + +GF   G+               +   +    
Sbjct: 433 VT--PDGKIWTIRMNL----IKDEDGKVTGFLQTGL--DITAHRRSEEKLLQAKLEAEAA 484

Query: 208 HEIKKGHSSVEKEKYDIF 225
              K    +    +    
Sbjct: 485 SCTKSEFLANMSHELRTP 502


>gi|32476695|ref|NP_869689.1| sensor/response regulator hybrid [Rhodopirellula baltica SH 1]
 gi|32447241|emb|CAD77067.1| probable sensor/response regulator hybrid [Rhodopirellula baltica SH
            1]
          Length = 1739

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 131/763 (17%), Positives = 281/763 (36%), Gaps = 48/763 (6%)

Query: 83   VRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQN 141
             +  W  +A G ++  S    +  G    + +G+   DV      +    +  D + +  
Sbjct: 856  AQIVWIANADGVVESDSPSWREYTGQTLEQWVGLGWLDVIHPDDRELTQKVWTDAVAKDR 915

Query: 142  TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
                +  L    G   Y    +   P    +   +  R  G+          R      +
Sbjct: 916  PLVLEYRLRNRHGE--YRWFQVRTAPQRRPDGTVN--RWVGMNIDIHDQKQSRLELADRE 971

Query: 202  KKFSHLHEIKKGHSSVEKEKYDIFS--QQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
                 +   + G   V      +     +S       +++V     + A   +       
Sbjct: 972  AHLRRVINNQLGLVGVIDRNGLLLEVDDRSLEYARVNRHEVIGKPFHEAPWWNYDPNVAQ 1031

Query: 260  PLLTSEESSLPEQEDFHTINLNQYTKKQYF-----GTLQNNSKES----FEYLSHRNHPS 310
             +  + E +   +   + ++L  +             + ++           +  R+   
Sbjct: 1032 QMRDAMERAFKGEPVRYDVSLFAHGDDGVLIDFMIAPVFDDDGNIEYLIPSGVDIRDRKK 1091

Query: 311  LSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
                  E         +        +   G +   N +   +  Y  VD++  +  ++ L
Sbjct: 1092 AELKQQEVAVRLEAIFNTAVDGIITIDRRGTINSVNVAAAKIFGYG-VDELTGSN-INAL 1149

Query: 370  LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
            +  P+ S+++              I    R  T +    ++ ++     E +        
Sbjct: 1150 IPEPEHSEHDGYLKAYEETGQSHII-GHQRQVTGRRKDGSTFSLDLSVSETSLSGEH--R 1206

Query: 430  QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
              GI  +  D   +++  +    ++   L A          +       + + +LFG   
Sbjct: 1207 YVGIVRDVSDRVRSEQAKKNASRRMQMALRAGGMAAWEWTPKK--SYWTKEMYELFGVTD 1264

Query: 490  EDILRKP--FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL----RI 543
            +     P         +    +  +  E +  +  Q  E        + ++  +     +
Sbjct: 1265 DR-KGSPELCFSLTHPDDVESLKRHWQEAIEGN--QDYEYEFRIVRPDGEMRWITGMGEV 1321

Query: 544  IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
            +  K    +       D ++   +   L  +++ A + S+ KS FLA +SHEIRTP+TAI
Sbjct: 1322 VRGKSGNVTRMYGVNWDSTQEHVQAETLRESERRANEASASKSAFLANMSHEIRTPMTAI 1381

Query: 604  IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
            +G++E++++     + +   + +   I R+G+ +LDI+ND+LD+SKIE+GK+++  E   
Sbjct: 1382 LGYAELLQD----IIQDTEGLHHLQTIRRNGDYLLDIINDILDLSKIEAGKLDVESERFD 1437

Query: 664  LDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSG 722
                + +  S++++ A E  + +   +   IP  I +D + +KQ+ +N++ NAI FTP G
Sbjct: 1438 PAHLIEDVRSIMEVRAKEAGLELTVEYGQQIPASIQSDAKRLKQVLINLVGNAIKFTPEG 1497

Query: 723  GQIIISTTHTSNE-EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
              + +     S    + + V DTG+G+T  + E+   PF Q  +S      GTGLGL ++
Sbjct: 1498 -NVRLVVRMESEPIRLCIDVIDTGIGITPEQQEQLFLPFSQGDSSVNRTFGGTGLGLTIS 1556

Query: 782  KAMVDANMGKFYIFSTPAKGTLIEII-FP-------LYDTSHP 816
            + + +   G  +  S    G+   +  FP       + D S P
Sbjct: 1557 RRLAEMLGGTIHFQSEVGVGSTFTLSVFPGDLTGVAMVDHSQP 1599



 Score = 94.3 bits (233), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 47/430 (10%), Positives = 120/430 (27%), Gaps = 34/430 (7%)

Query: 177 GFRG-FGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKE------KYDIFSQQS 229
           G RG F     NR       L    +     +    +    +  E       ++      
Sbjct: 579 GLRGAFAEAKANRRRVVRDDLLIMSESGQQRVKLTIQPMMQLGHETELFMVAFEDLGPSI 638

Query: 230 PPPHLRMKNKVSSLT--EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287
            P      + + S        H    ++  +  L T+ +      ++    N    +   
Sbjct: 639 APSDSSTDDSIGSDPSIAADPHAQQRIEQLERELATTRDDLDRSIQEMEATNEELTSSYN 698

Query: 288 YFGTLQNNSKESFEYLSHRNHP--SLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYA 344
               +    + + E L        S S             +    I   F+    ++   
Sbjct: 699 ELLVMNQGLQTANEKLEISKEEIRSSSEAVARANADLQNLLRSTRIATIFLDDDLSIRSF 758

Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
            P+   +    + D       +     AP + D   +    L   +              
Sbjct: 759 TPAATEIYGLIATDVGRPLTQI-----APNVQDMPPLPKWELLIQEDGVEH--------T 805

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
                  A         +   ++        +         ++        S++ A++  
Sbjct: 806 IVANTGKAFIRRVLPYRSYSGDHDGIVLTFTDVT-------QLRESEELFQSLVRASAQI 858

Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
           + I N +G++ S + +  +  G  +E  +   +   +  +   +     T+ ++ D    
Sbjct: 859 VWIANADGVVESDSPSWREYTGQTLEQWVGLGWLDVIHPDDRELTQKVWTDAVAKDRPLV 918

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKES 582
           LE        E +   +R   ++ P    + +     DI + KQ + +L+  +    +  
Sbjct: 919 LEYRLRNRHGEYRWFQVRTAPQRRPDGTVNRWVGMNIDIHDQKQSRLELADREAHLRRVI 978

Query: 583 SHKSDFLARV 592
           +++   +  +
Sbjct: 979 NNQLGLVGVI 988


>gi|311746666|ref|ZP_07720451.1| PAS/PAC domain-containing protein [Algoriphagus sp. PR1]
 gi|126578338|gb|EAZ82502.1| PAS/PAC domain-containing protein [Algoriphagus sp. PR1]
          Length = 1436

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 129/749 (17%), Positives = 256/749 (34%), Gaps = 46/749 (6%)

Query: 90   DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
            D  G    ++      +G    +++   L D+               +K++    G+   
Sbjct: 292  DLDGKFLSVNSSGAGILGYKPEEIMSKTLFDIVPEYKHHEIQGYLAQIKKEGKAAGQMLT 351

Query: 150  WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
               +GT     +    L     +     +   G               K   +      +
Sbjct: 352  LHRDGTK-KTWLFNNVLQKNDLDGS---YYVIGNAIDITRRARLEKDLKETKEILEETGK 407

Query: 210  IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD---------DVLKTEKYP 260
            + +             S     P  R  ++V                        TE   
Sbjct: 408  LARVGGWTLDPIQQKISWS---PMTRAIHEVDDDFVPELETGINFYKEGESREKITEAIE 464

Query: 261  LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
               +  +         T   N+   +       N+              +     +    
Sbjct: 465  QAMTYGTPWDLDLQLVTQKGNEIWVRAIGNVDFND-GVCTRLFGTFQDINKEKTAELEAA 523

Query: 321  LTPETVDKCPIP------FFVYSHGNLFYANPSFLLLTKYKSVDDIEIA-GGLSTLLDAP 373
               + +D+                G +   N     +  YK+ + I      +  L +  
Sbjct: 524  RNRKLLDEVFKAASEVSIIATNLEGTITVFNEGAEKMLGYKAEELIGKKTPVIFHLEEEV 583

Query: 374  KLSDNNA--------IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
                 +                       +       ++ + +    ++       +   
Sbjct: 584  IAHAKDVSQDFGYKIEGFQSFVARANRDGSEKIDWTYVRKDGDT-RLVSLAVTPVKDHDN 642

Query: 426  ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
            +++   GI  +  + R  +  +  E  +L + +E T   +A+++++   ++ +    + +
Sbjct: 643  KSIGYLGIAIDLTEKRNIEIDLVNEKSRLSAFVEHTPAAVAMLDKDMCYIAVSNRWEEEY 702

Query: 486  GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD-LRQTLEKITLGSTKEEKLLSLRII 544
             Y  E+++ K       +           ++L  D L    EKI      E + +S  + 
Sbjct: 703  EYKSEEVIGKSHFDLFSELMNEERRANYYQVLQGDFLINNEEKIFFPGEIEPRFISWEMR 762

Query: 545  IKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
               L         +   +I+    ++ +L  AK+ AE+ S  KS+FLA +SHEIRTPL  
Sbjct: 763  PWYLYNGEIGGIMVFTQNITALVAQREELKEAKESAEEASKAKSEFLANMSHEIRTPLNG 822

Query: 603  IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
            +IGF++++   +     N    +Y + + +S N +L I+ND+LD SKIE+GK+ L  +  
Sbjct: 823  VIGFTDLVLKTKL----NETQHQYLSIVHQSANQLLSIINDILDFSKIEAGKLELDIDKC 878

Query: 663  SLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPS 721
             L E  S+A  ++      K + +  +   N+PR I AD   +KQ+ +N+L N+  FT  
Sbjct: 879  DLYEMASQATDIITYQIQNKGLEMLLNIGTNLPRFIYADSVRLKQVLVNLLGNSSKFTEK 938

Query: 722  GGQIIISTT-HTSNEE---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
            G +I +      S          VRDTG+G+   +  K  + F Q  +S   +  GTGLG
Sbjct: 939  G-EIELKIENLESEGNSNTFRFSVRDTGIGIKPEKQSKIFEAFSQEDSSTTKKYGGTGLG 997

Query: 778  LPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
            L +   ++     K  + S   KG+    
Sbjct: 998  LTITNKLLGLMDSKLQLKSEVGKGSTFFF 1026



 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 69/537 (12%), Positives = 143/537 (26%), Gaps = 58/537 (10%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN-TWYGKTTLW 150
            GY K++S  + K +G     ++G    ++      + +    + L +   T        
Sbjct: 172 DGYFKKLSPSVEKLLGWGEDVLLGKSFLELIHEEDKESSKKELEKLGQGIPTINFINRFL 231

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
             +G   Y+ I   A P      E      F I     ++ +   +    ++K     E 
Sbjct: 232 KKDGG--YITIQWTASP------EPETQSVFAIGRDITLEKNRELMLIESEQKLRAFFEN 283

Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEKYPLLTS--EE 266
            +G            S  S    +      ++ S T +    +      +  L     E 
Sbjct: 284 SQGLMCTHDLDGKFLSVNSSGAGILGYKPEEIMSKTLFDIVPEYKHHEIQGYLAQIKKEG 343

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES---FEYLSHRNHPSLSAYFDEGENLTP 323
            +  +    H     +           +           +       L     E + +  
Sbjct: 344 KAAGQMLTLHRDGTKKTWLFNNVLQKNDLDGSYYVIGNAIDITRRARLEKDLKETKEILE 403

Query: 324 ETVDKCPIPFFVYSHGNLFYANPSFLLLTK--YKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
           ET     +  +            S+  +T+  ++  DD                S     
Sbjct: 404 ETGKLARVGGWTLDP---IQQKISWSPMTRAIHEVDDDFVPELETGINFYKEGESREKIT 460

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
           + +    +  T       L  +               +  +         G   +    +
Sbjct: 461 EAIEQAMTYGT--PWDLDLQLVTQKGNEIWVRAIGNVDFNDGVC--TRLFGTFQDINKEK 516

Query: 442 INKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
             + +       L  + +A S+  I   N EG I   N    K+ GY  E+++ K   V 
Sbjct: 517 TAELEAARNRKLLDEVFKAASEVSIIATNLEGTITVFNEGAEKMLGYKAEELIGKKTPVI 576

Query: 501 LEQNTP----------------SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
                                      ++         + ++   +    + +L+SL + 
Sbjct: 577 FHLEEEVIAHAKDVSQDFGYKIEGFQSFVARANRDGSEK-IDWTYVRKDGDTRLVSLAVT 635

Query: 545 IKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
             K   +    Y     D++E +  +  L +           KS   A V H   TP
Sbjct: 636 PVKDHDNKSIGYLGIAIDLTEKRNIEIDLVN----------EKSRLSAFVEH---TP 679



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 40/321 (12%), Positives = 92/321 (28%), Gaps = 22/321 (6%)

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF-DEGENLTPET 325
           ++ P  +                  L ++     + L+      +     +       + 
Sbjct: 99  AAFPIIDKTGVFQGTLIVNNPNKVGLNDDQILGLKILAGGLSSLMEDRKKNMELRHFEKM 158

Query: 326 VDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
                    + S  G     +PS   L  +   D +     L  + +  K S    ++  
Sbjct: 159 FQLSSDLVCLASVDGYFKKLSPSVEKLLGWG-EDVLLGKSFLELIHEEDKESSKKELE-- 215

Query: 385 MLYRSDRTCIA-ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
                    I   +     ++ +              A+  PE      I  +    +  
Sbjct: 216 ----KLGQGIPTINFINRFLKKDGGYITIQW-----TASPEPETQSVFAIGRDITLEKNR 266

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
           +  +     +L +  E +   +   + +G  LS N + + + GY  E+I+ K     + +
Sbjct: 267 ELMLIESEQKLRAFFENSQGLMCTHDLDGKFLSVNSSGAGILGYKPEEIMSKTLFDIVPE 326

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE-KLLSLRIIIKKLPFSSCYSLTM---H 559
                +  YL +I             L   ++  K   L   + +          +    
Sbjct: 327 YKHHEIQGYLAQIKKEGKAAG---QMLTLHRDGTKKTWLFNNVLQKNDLDGSYYVIGNAI 383

Query: 560 DISEWKQEKNKLSHAKKIAEK 580
           DI+   + +  L   K+I E+
Sbjct: 384 DITRRARLEKDLKETKEILEE 404



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/263 (10%), Positives = 65/263 (24%), Gaps = 32/263 (12%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGM------RLCD--VSDILHIDPN-----NHIGD 135
            +  G +   +E   K +G  A ++IG        L +  ++    +  +          
Sbjct: 544 TNLEGTITVFNEGAEKMLGYKAEELIGKKTPVIFHLEEEVIAHAKDVSQDFGYKIEGFQS 603

Query: 136 LLKRQNTWYGKTTLW---PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192
            + R N    +   W     +G      + LA  P+   + +  G+ G  I        +
Sbjct: 604 FVARANRDGSEKIDWTYVRKDGDTR--LVSLAVTPVKDHDNKSIGYLGIAI--DLTEKRN 659

Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD 252
                     + S   E      ++  +     +  +             + + +     
Sbjct: 660 IEIDLVNEKSRLSAFVEHTPAAVAMLDKDMCYIAVSNRWEEEYEYKSEEVIGKSHFDLFS 719

Query: 253 VLKTEKYPL------------LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF 300
            L  E+                  E+   P + +   I+        Y G +      + 
Sbjct: 720 ELMNEERRANYYQVLQGDFLINNEEKIFFPGEIEPRFISWEMRPWYLYNGEIGGIMVFTQ 779

Query: 301 EYLSHRNHPSLSAYFDEGENLTP 323
              +            E      
Sbjct: 780 NITALVAQREELKEAKESAEEAS 802


>gi|89896124|ref|YP_519611.1| hypothetical protein DSY3378 [Desulfitobacterium hafniense Y51]
 gi|89335572|dbj|BAE85167.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 896

 Score =  375 bits (963), Expect = e-101,   Method: Composition-based stats.
 Identities = 108/643 (16%), Positives = 213/643 (33%), Gaps = 65/643 (10%)

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSP----PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
           HL +             +                 + +          +D          
Sbjct: 6   HLVDNLPALLWSSDRAGNYDYVNQAWLQFTGLTFAEVRGEGWLSCVHPEDSPGVMNVLEH 65

Query: 262 LTSEESSLPEQEDFHTINLNQY----TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
               ++    +      +          + Y       +  +   +      +      E
Sbjct: 66  SRRHKAPFEAEYRLRRYDGEYRHCLSRGQPYDDPKGELAGYTGVIIDITERKAAEIMTRE 125

Query: 318 GENLTPETVDKCPIPFFVYSH------GNLFYANPSFLLLTKYKSVDDIE---------I 362
                 E  ++     F++        G +   N     L      + I+          
Sbjct: 126 NAEKFREIFNRITDCVFIHEVKDDGQIGKIQEVNDMACELIGLTRAEIIDLSREVIKVKS 185

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
              L+       LS N  +   ML       I    + H    N    L           
Sbjct: 186 PLTLANEFTQKLLSKNYLVFEGMLLTHQGKEIPVEVKAHYHVLNGRRML----------- 234

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-----GIILST 477
                     I  +  + +   + +     +   + +  +D + +   +     G+++  
Sbjct: 235 --------LSIARDISNQKRIHKILLASHNKYRQLFDNITDAVFVYELQKDGYPGLLIEI 286

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
           N    +L GY  E+         +  ++P +    + ++L      + E I      E+ 
Sbjct: 287 NEKARRLMGYH-EETFMFSAGPCIRPSSPQLTLDDVWQMLEETHSASFEGICTNLEGEDI 345

Query: 538 LLSLRIIIKKLPFSSCYSLTMHDISEWK-------QEKNKLSHAKKIAEKESSHKSDFLA 590
            + +      L  S      + DI+E K       + + +   AK+ AE  +  KS+FLA
Sbjct: 346 PVEVNCHTFPLNGSKVMLTLLRDITERKQIEQERKRAEAEFQQAKEKAEAANRAKSEFLA 405

Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650
            +SHEIRTP+  IIG    + +            E           +  I+ND+LD SKI
Sbjct: 406 NMSHEIRTPINGIIG----MIDLTLLTSLEKTQRENLKIAKNCAYSLFKIINDILDFSKI 461

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIAL 709
           E+GK+ +     +L E + + I      A  K + +  + + N+P     D   +KQ+  
Sbjct: 462 EAGKLTVEEIEFNLKEVIEQIIKTHSPEAERKGLDLAYTLSANLPDYYKGDPERIKQVLN 521

Query: 710 NILSNAIHFTPSGGQIIISTTH----TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           N+LSNA+ FT  G ++ ++           ++   V DTG+G+   +     + F Q+  
Sbjct: 522 NLLSNALKFTERG-EVSLAVKRLQGDEDVSDLKFTVMDTGIGIAEEDQLHLFEEFNQVDG 580

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           S   +  GTGLGL +++ +V+   G+ ++ S   KG+   ++ 
Sbjct: 581 SITRKYGGTGLGLAISRKLVEMMGGRIWVESEKGKGSSFGVVL 623



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 45/393 (11%), Positives = 87/393 (22%), Gaps = 30/393 (7%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144
             W+ D  G    +++   +  G    ++ G            D    +  L   +    
Sbjct: 14  LLWSSDRAGNYDYVNQAWLQFTGLTFAEVRGEGWLSCVHPE--DSPGVMNVLEHSRRHKA 71

Query: 145 GKTTLWPIEGTNLYVPIDLA-ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                + +   +      L+   P      E +G+ G  I            + +   +K
Sbjct: 72  PFEAEYRLRRYDGEYRHCLSRGQPYDDPKGELAGYTGVII--DITERKAAEIMTRENAEK 129

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
           F  +         + + K D    +    +      +             +   K PL  
Sbjct: 130 FREIFNRITDCVFIHEVKDDGQIGKIQEVNDMACELIGLTRAEIIDLSREVIKVKSPLTL 189

Query: 264 SEESS----------LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
           + E +                 H         K ++  L              N   +  
Sbjct: 190 ANEFTQKLLSKNYLVFEGMLLTHQGKEIPVEVKAHYHVLNGRRMLLSIARDISNQKRIHK 249

Query: 314 YFDEGENLTPETVDKCPIPFFVYSH------GNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
                 N   +  D      FVY        G L   N     L  Y     +  AG   
Sbjct: 250 ILLASHNKYRQLFDNITDAVFVYELQKDGYPGLLIEINEKARRLMGYHEETFMFSAGPCI 309

Query: 368 TLLDAPKLSDN---------NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
                    D+         +A    +    +   I      HT   N    +       
Sbjct: 310 RPSSPQLTLDDVWQMLEETHSASFEGICTNLEGEDIPVEVNCHTFPLNGSKVMLTLLRDI 369

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEV 451
            +  Q  +   +   E +    +          
Sbjct: 370 TERKQIEQERKRAEAEFQQAKEKAEAANRAKSE 402


>gi|71281538|ref|YP_270817.1| sensory box histidine kinase/response regulator [Colwellia
            psychrerythraea 34H]
 gi|71147278|gb|AAZ27751.1| sensory box histidine kinase/response regulator [Colwellia
            psychrerythraea 34H]
          Length = 1683

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 116/531 (21%), Positives = 229/531 (43%), Gaps = 30/531 (5%)

Query: 291  TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFL 349
               + S+ S + L+ +            E  +             V   G+  +AN S  
Sbjct: 657  RANDISRRSQQELAEQVTIRT-KELAASEQKSKLINSSVADGILGVDKLGHFIFANESAT 715

Query: 350  LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
             +T Y     +  +  L +L       +N   +   +Y++ ++          +  +   
Sbjct: 716  KITGYSEEQIL--SSDLISLFAGDNK-ENLTFEDTEVYKAIQSKEVIRISNEYVLMSGAR 772

Query: 410  SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469
             L + +      +   E      +  +             E  +L  +LE     + I+N
Sbjct: 773  ELPLEYSISPVEDDESELACVIAL-QDITLRV-------QETERLEKMLEHLPVCMVIMN 824

Query: 470  REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL---RQTLE 526
            +   +   N+   +L G+  ++I+  P  +F+ Q         L +    +     ++LE
Sbjct: 825  QNDEVEQINQTGIELLGFERDEIVGNPVDLFIPQEQVESHKALLKKFFQEETVIDTRSLE 884

Query: 527  KITLGSTKEEKLLSLRIIIKKLPFSSCYSL--TMHDISEWKQEKNKLSHAKKIAEKESSH 584
            +      K  KL+ ++ +   + F +       + DI+  +Q +  L  AK+I++  S  
Sbjct: 885  RDFKVKHKSGKLIEIQAVYTPVHFHNGLYAAVMVRDITLDRQAEFALLEAKRISDDASKA 944

Query: 585  KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
            KSDFLA +SHEIRTP+ AI+G S +      G   + +   Y   + ++   +L I+ND+
Sbjct: 945  KSDFLANMSHEIRTPMNAIMGMSHL----ALGCELDRKPKNYVTKVYKAAESLLGIINDI 1000

Query: 645  LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRS 703
            LD SKIE+GK+++     SL +  ++  +++ L A EK + +    + ++P  +  D   
Sbjct: 1001 LDFSKIEAGKLDIEVIEFSLHDTFADLANIIGLKAGEKNLELLFDISPDVPVNLKGDPLR 1060

Query: 704  VKQIALNILSNAIHFTPSGGQII-------ISTTHTSNEEVILRVRDTGVGMTNYELEKA 756
            + QI +N+  NA+ FT  G  +I       +ST+H  +  +   V+D+G+GM + + +K 
Sbjct: 1061 LNQILINLAGNAVKFTEQGQVVISVNVVTNVSTSHCDDINLEFSVKDSGIGMDDEQQKKL 1120

Query: 757  MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
             + F Q  +S   +  GTGLGL ++K +V+   G+ ++ S   +G+     
Sbjct: 1121 FQSFSQADSSTTRKYGGTGLGLTISKKLVELMNGQIWLESKAGEGSCFSFT 1171


>gi|83646319|ref|YP_434754.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83634362|gb|ABC30329.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 778

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 98/499 (19%), Positives = 216/499 (43%), Gaps = 26/499 (5%)

Query: 317 EGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
           E ++     V+        + + G +   NP+   +  Y + + +     +  L+ +P  
Sbjct: 17  ESDSRVRAIVEAVADGIITIDNQGVIESFNPAAERIFGYDAEEAVGRN--VQMLMPSPFR 74

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
             +++     L   +   I     +  ++ +                Q        G+  
Sbjct: 75  EHHDSYLANYLQTGNAQIIGVGREVLGLRKDGS---LFPLDLAVTEMQVEGRRMFTGVVR 131

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
           +  + + ++  ++    ++ +I++   DGI  I+  G+I + N A  ++FGY   D++  
Sbjct: 132 DISERKASELALQDREARVRAIVDTVVDGIITIDGAGLIDTFNPAAERIFGYAASDVIGV 191

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSC 553
             ++ + +   S  + Y+ + +     + +   +   G  ++     + + + ++     
Sbjct: 192 NVSILMPEPYHSEHDGYIAKFMHTGEAKVIGVGREVTGRRRDGSTFPMELAVSEMTVEGR 251

Query: 554 --YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
             ++  + DI++ K+ +                K +F+A VSHE+RTPLTAI G   ++ 
Sbjct: 252 RMFTGVVRDITDRKRME--------------RQKDEFIATVSHELRTPLTAIGGALGLVL 297

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
            +  G L     ++      R+ + +  ++ND+L+I K+ESG +    E   L   +  +
Sbjct: 298 GKHGGELPK-TVLKMLKVAHRNCDRLTLLINDILEIEKLESGALKFELEDQDLATLIQRS 356

Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
           +   + +A + ++ +R S +   P +  D R   Q+  N++SNA+ ++P GG + I+ + 
Sbjct: 357 LEDHKEFAGKYQVELRFSNSPPRPWVHVDERRFHQVMSNLISNAVKYSPRGGAVDIAVSD 416

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
            +N  V + V+D G G+      +  + F Q  +S      GTGLGL +AKA+V+ + G+
Sbjct: 417 VAN-RVRVHVKDYGKGIPEDFHSRVFERFSQADSSDTREQGGTGLGLSIAKAIVEHHGGE 475

Query: 792 FYIFSTPAKGTLIEIIFPL 810
              FS   +G       P+
Sbjct: 476 IGFFSKTNEGAEFYFDLPI 494



 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/284 (8%), Positives = 75/284 (26%), Gaps = 30/284 (10%)

Query: 66  NYLDSENTFVFDPIPRTVRFT-------WNIDAHGYLKEISEELPKTIGNYAFKMIGMRL 118
           N+    + F  +   R              ID  G ++  +    +  G  A + +G  +
Sbjct: 6   NHKAGGSGFRSESDSRVRAIVEAVADGIITIDNQGVIESFNPAAERIFGYDAEEAVGRNV 65

Query: 119 CDVSDILHIDPNNH-IGDLLKRQNT----WYGKTTLWPIEGTNLYVPIDLAALPIYSRNR 173
             +      + ++  + + L+  N        +      +G+   + + +          
Sbjct: 66  QMLMPSPFREHHDSYLANYLQTGNAQIIGVGREVLGLRKDGSLFPLDLAVT-------EM 118

Query: 174 EFSGFRGF-GIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP- 231
           +  G R F G+V             +  + +   + +              I +      
Sbjct: 119 QVEGRRMFTGVVRDISERKASELALQDREARVRAIVDTVVDGIITIDGAGLIDTFNPAAE 178

Query: 232 --PHLRMKNKVSS-----LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYT 284
                   + +       + E Y  + D    +      ++   +  +      + + + 
Sbjct: 179 RIFGYAASDVIGVNVSILMPEPYHSEHDGYIAKFMHTGEAKVIGVGREVTGRRRDGSTFP 238

Query: 285 KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
            +     +    +  F  +      +     +  ++    TV  
Sbjct: 239 MELAVSEMTVEGRRMFTGV--VRDITDRKRMERQKDEFIATVSH 280


>gi|260463553|ref|ZP_05811752.1| PAS/PAC sensor signal transduction histidine kinase [Mesorhizobium
            opportunistum WSM2075]
 gi|259030644|gb|EEW31921.1| PAS/PAC sensor signal transduction histidine kinase [Mesorhizobium
            opportunistum WSM2075]
          Length = 1307

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 196/699 (28%), Positives = 302/699 (43%), Gaps = 130/699 (18%)

Query: 186  VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE 245
               VD +  A   RLD     +               D   Q  P P         S   
Sbjct: 657  ETEVDAEDEADLARLDGVDEAVRAEDDTSPGATGSLLDYADQSEPGPVADNDEPAVSEPA 716

Query: 246  YYAHKDDVLKTEKYPLLTSEESSLPEQED------FHTINLNQYTKKQYFGTLQNNSKES 299
                +           + ++ +  P  +D      F     N+       G   +    S
Sbjct: 717  AAEPESTEPVATDAEPVGADMTHEPVDDDSMTSADFRDAEDNEDWAGSEEGAAPDVQAAS 776

Query: 300  FEYLSHRNHPSLSAYF--------------DEGENLTPETVDKCPIPFFVYSHGNLFYAN 345
                +H   P L                  DE +      + K P+P  ++S   L YAN
Sbjct: 777  DGAEAHAERPRLQVPPLKTEGFTPSAFSVGDESKAPDTLLLGKLPVPLLIHSGDQLHYAN 836

Query: 346  PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD---NNAIKPVMLYRSDRTCIAASARLHT 402
              FL LT Y ++DD+E AGGL  L   P   D   + + + + L   D       A L +
Sbjct: 837  EEFLNLTGYAALDDLEDAGGLGALFADPYAEDGVSDGSDRALRLKTRDGQEFPIDAILRS 896

Query: 403  IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
            + W    +L +        ++ P  +   G EP   D      +++  + ++ +I++  +
Sbjct: 897  VPWRDGKALMLVVRR-SGEDETPVALHVVGDEPTQPDI----SELKARIAEMRTIIDTAT 951

Query: 463  DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522
            DG+ +I  +G I S +R    LFG+  +++  KPF       +      YLT +    + 
Sbjct: 952  DGVVLIGTDGTIRSISRPAEALFGFDSDEVTGKPFASLFAIESQRAARDYLTGLSEPGVA 1011

Query: 523  QTLE--KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
              L   +  +G   + + + L + I +LP  S +   + DI++WK+ +  L+ A+ +AE+
Sbjct: 1012 SVLNDGREVIGREAQGRFIPLFMTIGRLPNDSGFCAVVRDITQWKRAEEDLTQARAVAER 1071

Query: 581  ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
             SS K+DFLAR+SHEIRTPL AIIGFSE++ +++FGP+ N RY +Y   I+RSGN VLD+
Sbjct: 1072 ASSQKTDFLARISHEIRTPLNAIIGFSELMVDEKFGPVANDRYRDYLRDINRSGNHVLDL 1131

Query: 641  VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILAD 700
            VNDLLDISKIE+G+  + +E VSL++ ++E ++++Q  AN +R++IR+SFA+ +P ++AD
Sbjct: 1132 VNDLLDISKIEAGQQEMAYEAVSLNDTLAETVAMMQPQANRERVIIRSSFASRLPEVVAD 1191

Query: 701  LRSVKQIALNILSNAIHFT----------------------------------------- 719
            LRSV+QIALNILSNAI +T                                         
Sbjct: 1192 LRSVRQIALNILSNAIRYTQAGGQVIVSTAYETSGDVVMRVRDTGIGMSQAEIEQALKPF 1251

Query: 720  ---------PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
                        G                                               
Sbjct: 1252 KQINALKRGRGDG----------------------------------------------- 1264

Query: 771  GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
               TGLGLPL KAMV+AN  +F I STP +GTL+E+ FP
Sbjct: 1265 ---TGLGLPLTKAMVEANRARFTINSTPGEGTLVEVAFP 1300



 Score =  167 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 80/408 (19%), Positives = 136/408 (33%), Gaps = 9/408 (2%)

Query: 37  EKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLK 96
           +                      ++ S T    +      D     +RF W  DA G   
Sbjct: 326 DPETVPGQTAADAAVEKSGADGIQATSPTVPTATPAARTIDRSAAPMRFVWRTDAEGKFS 385

Query: 97  EISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTN 156
            +S E    +G  A  +IG R  DV+    +D +  I  LL+R++TW G+T LWP+ GT+
Sbjct: 386 TLSPEFADIVGQPAADVIGRRFRDVAAAFGLDASGEIAGLLERRDTWSGRTALWPVVGTD 445

Query: 157 LYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSS 216
           L +P+DLAALP+Y R+R F GFRGFG+   +    DP A+G  L          +    +
Sbjct: 446 LKIPVDLAALPVYGRSRAFEGFRGFGVARPSDAVVDPEAIGMALMPNGKAPAAPEAVEPA 505

Query: 217 VEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFH 276
            E+ K     +    P       ++ + +      D +           +  L   E   
Sbjct: 506 AEEPKA---GEPKADPFKGEVPALTIVPKPERRFADKVIRLAEHRQPVNDKGLSTLERSA 562

Query: 277 TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY 336
              + +  KK         +++           + +      E   P      P    V 
Sbjct: 563 FREIGERLKKDSSTAEPPEAEKPGVESHPAEPAAAAPAEPVAEAQAPTARTDAP----VD 618

Query: 337 SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA 396
           + G +  A+ +        + +           L  P  ++ +A     L R D    A 
Sbjct: 619 AAGGVSEADTATPPEEPKDAGEHPATEPQGDPALAEPSETEVDAEDEADLARLDGVDEAV 678

Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
            A              + +    +     +N      EP   +    +
Sbjct: 679 RAE--DDTSPGATGSLLDYADQSEPGPVADNDEPAVSEPAAAEPESTE 724



 Score = 41.9 bits (97), Expect = 0.41,   Method: Composition-based stats.
 Identities = 26/273 (9%), Positives = 62/273 (22%), Gaps = 7/273 (2%)

Query: 58   NQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMR 117
            ++ +  + + L +    +   I         I   G ++ IS       G  + ++ G  
Sbjct: 926  DEPTQPDISELKARIAEMRTIIDTATDGVVLIGTDGTIRSISRPAEALFGFDSDEVTGKP 985

Query: 118  LCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSG 177
               +  I            L              + G           +P++        
Sbjct: 986  FASLFAIESQRAARDYLTGLSEPGVASVLNDGREVIGREAQGRF----IPLFMTIGRLPN 1041

Query: 178  FRGFG-IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM 236
              GF  +V              +           K    +    +              M
Sbjct: 1042 DSGFCAVVRDITQWKRAEEDLTQARAVAERASSQKTDFLARISHEIRTPLNAIIGFSELM 1101

Query: 237  KNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS 296
             ++         ++D +    +          + +  D   I   Q        +L +  
Sbjct: 1102 VDEKFGPVANDRYRDYLRDINRSGNHVL--DLVNDLLDISKIEAGQQEMAYEAVSLNDTL 1159

Query: 297  KESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
             E+   +  + +           +  PE V   
Sbjct: 1160 AETVAMMQPQANRERVIIRSSFASRLPEVVADL 1192


>gi|71909161|ref|YP_286748.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
 gi|71848782|gb|AAZ48278.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
          Length = 982

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 126/712 (17%), Positives = 234/712 (32%), Gaps = 71/712 (9%)

Query: 139 RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
           +++   G     P+ G    V +   A      +  F+G     +       +D  A   
Sbjct: 147 KEHPETGTLINDPVLGYVTKVHLVPVAARYRYPDGRFAGIVSVAV--PVSYLSDQLAKLD 204

Query: 199 RLDKKFSHLHEIK-----KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253
                 + L + K     +  +  + E        +      +++   S   +     D 
Sbjct: 205 YGPHGLAVLRDAKLNLITRYPALNKPEGELGAPIYNKTLIAGIEDGKRSFFYHTQTTPDG 264

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
           +         S              +      ++   T+      +F   +         
Sbjct: 265 VSRLITYQRLS-SMPFHLIVGLAHDDYLLPWYERLQQTVIALVIFAFATFALSLLLLGML 323

Query: 314 YFDEGE-NLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGG------ 365
                +       +        +   HG +  AN +F  L  Y   + I +A G      
Sbjct: 324 SSLRRQGEHAVALLKNASDGVHILDRHGVIVEANDAFCALLGYSRQEVIGMAIGQWDSSV 383

Query: 366 ----LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
               +  +L     S           R D +   A      +                  
Sbjct: 384 KDVDVEAMLAQRFQSPVPDQFETRHRRKDGSEFPAEVSFQPMVIEG-------------- 429

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
                         +  D +  +  +  E     ++++   D I + + +G+ LS NR  
Sbjct: 430 -----VELLYASSRDISDRKRAELVLARERSMYRTLIDTLPDLIWLKDADGVYLSCNRRF 484

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
            + FG   ++I+ K    F+ +        +  + +  D     E+       +     L
Sbjct: 485 EQFFGTSEQEIVGKTDYDFVSKELADFFREHDRKAMEKDGPSINEEEVPF-ASDGHRELL 543

Query: 542 RIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEK----------------- 580
                 +  +S          HDI+  ++ + +L   ++  ++                 
Sbjct: 544 ETTKMSMRDASGKLIGVLGIGHDITAKRRSELELDGHRQHLQELVDSQTADLMVAKEVAE 603

Query: 581 -ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639
             S  KS FLA +SHEIRTP+ AI G   +++N    P  + +     + I+ +   +L 
Sbjct: 604 TASVAKSAFLANMSHEIRTPMNAITGMVHILRNMGVTPPQSEK----LDIIENASKHLLG 659

Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA 699
           I+ND+LD+SKIE+GK  L   P+S+        S++     EK +++     +    +  
Sbjct: 660 IINDVLDLSKIEAGKFTLEDVPLSIRALFGNVASMLGPKVREKGLVLNIEADDVPRNLRG 719

Query: 700 DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV----ILRVRDTGVGMTNYELEK 755
           D   ++Q  LN   NA+ FT  G  I +        E+     + V DTGVG+    L K
Sbjct: 720 DPTRLQQALLNFAGNALKFTERG-HITLRARILEETELSANLCIEVEDTGVGIAPEALPK 778

Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
               F Q  NS   +  GTGLGL + K + +   G   + STP  G+     
Sbjct: 779 LFGAFEQADNSMTRKYGGTGLGLAITKKIAEVMGGTAGVNSTPGGGSTFWFT 830



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/407 (11%), Positives = 117/407 (28%), Gaps = 26/407 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCD-VSDILHIDPNNHIGDLLKRQNTWYGKT 147
           +D HG + E ++     +G    ++IGM +    S +  +D    +    +       +T
Sbjct: 347 LDRHGVIVEANDAFCALLGYSRQEVIGMAIGQWDSSVKDVDVEAMLAQRFQSPVPDQFET 406

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                +G+    P +++  P+     E      +              +  R    +  L
Sbjct: 407 RHRRKDGS--EFPAEVSFQPMVIEGVELL----YASSRDISDRKRAELVLARERSMYRTL 460

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPH--LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
            +       ++       S            + ++   T+Y     ++    +     + 
Sbjct: 461 IDTLPDLIWLKDADGVYLSCNRRFEQFFGTSEQEIVGKTDYDFVSKELADFFREHDRKAM 520

Query: 266 E---SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS----HRNHPSLSAYFDEG 318
           E    S+ E+E     + ++   +    ++++ S +    L                D  
Sbjct: 521 EKDGPSINEEEVPFASDGHRELLETTKMSMRDASGKLIGVLGIGHDITAKRRSELELDGH 580

Query: 319 ENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
                E VD       V          A  +FL    ++    +    G+  +L    ++
Sbjct: 581 RQHLQELVDSQTADLMVAKEVAETASVAKSAFLANMSHEIRTPMNAITGMVHILRNMGVT 640

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
              + K  ++  + +  +     +  +         +  +P      F       G +  
Sbjct: 641 PPQSEKLDIIENASKHLLGIINDVLDLSKIEAGKFTLEDVPLSIRALFGNVASMLGPKVR 700

Query: 437 D------VDTRINKRKMEIEVMQL-CSILEATSDGIAIINREGIILS 476
           +      ++     R +  +  +L  ++L    +        G I  
Sbjct: 701 EKGLVLNIEADDVPRNLRGDPTRLQQALLNFAGNA-LKFTERGHITL 746



 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/157 (12%), Positives = 42/157 (26%), Gaps = 4/157 (2%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID-PNNHIGDLLKRQNTW 143
             W  DA G     +    +  G    +++G    D       D    H    +++    
Sbjct: 467 LIWLKDADGVYLSCNRRFEQFFGTSEQEIVGKTDYDFVSKELADFFREHDRKAMEKDGPS 526

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +    P         ++   + +   + +  G  G G  H                + 
Sbjct: 527 INEE-EVPFASDGHRELLETTKMSMRDASGKLIGVLGIG--HDITAKRRSELELDGHRQH 583

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV 240
              L + +     V KE  +  S         M +++
Sbjct: 584 LQELVDSQTADLMVAKEVAETASVAKSAFLANMSHEI 620


>gi|91793039|ref|YP_562690.1| CHASE [Shewanella denitrificans OS217]
 gi|91715041|gb|ABE54967.1| CHASE [Shewanella denitrificans OS217]
          Length = 1659

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 140/789 (17%), Positives = 276/789 (34%), Gaps = 58/789 (7%)

Query: 68   LDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI-GMRLCDVSDILH 126
            LD+EN    + +  ++    + D+ G +   ++      G    +++ G  L  +    +
Sbjct: 341  LDAENARRANILEHSLDAIISYDSEGLITGWNQGAEHIFGYTKDEVMQGANLGLIVPAAN 400

Query: 127  IDPN-NHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVH 185
             +        +L  +            E     +   + ALPIY+      G      + 
Sbjct: 401  KEIEWTQFKQVLSGEAIQNAVGVHHDKE--QNKLSTSMTALPIYNHVGVIVGVSQ--TIR 456

Query: 186  VNRVDNDPR----ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM----- 236
                  D       L   L++K     +  +   +  K  +D   QQ     + +     
Sbjct: 457  DITAAQDAERQIHELNASLERKVHLRTQALEHVVAENKTLFDTIDQQLLYSEIDLQGIIL 516

Query: 237  -------------KNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTIN--LN 281
                         + ++  L+       +  K     L    +S  P   +  T++    
Sbjct: 517  AVNDNFCEASGYSREQLVGLSHLQVSSGEHDKLFWQRLWNKIKSGKPWHGEICTLDSKGE 576

Query: 282  QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP------FFV 335
                      + +  K    ++S     +        +N     +               
Sbjct: 577  PKWFDTVIAPIFDKQKNIERFVSLATDITERKNAQLEKNKVGALLSNVLFAASEVAIIAT 636

Query: 336  YSHGNLFYANPSFLLLTKYKSVDDIEIA-GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394
               G +   N     L  Y   + +      +  L     L  +       +        
Sbjct: 637  DETGIISIFNRGAERLLGYHRDELVGKISPAIFHLTQEVMLRGDELSAEHGIEIRGFEAF 696

Query: 395  AASA-------RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
               A       R  T      +   ++       +     +   G+          + ++
Sbjct: 697  IYHAKHKGPETRRWTYVRKDGSECQVSLSVSAMRDTQGNLLGYLGVATNIDLMLKQQEEL 756

Query: 448  EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP----VEDILRKPFTVFLEQ 503
                 QL    E    GI     E  IL  N  +  ++ YP       +  + +   L  
Sbjct: 757  VSTSTQLTQAAEVAELGIWTWEIETNILDWNERMFAIYDYPSSLNHNGLSYQHWLDRLHP 816

Query: 504  NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY--SLTMHDI 561
            +   +    L   +            +  + E + +     + +  F           DI
Sbjct: 817  DDVDMAQEKLKAAIEGTGEYDPIFRVIRPSDEVRYVQGGAHVIRDRFGKALKLLGINRDI 876

Query: 562  SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
            +E ++ ++ L  AK+ A+  S+ KS FLA +SHEIRTP+ AI+G  +++++    P    
Sbjct: 877  TEQRELEHTLRRAKEEADATSAAKSAFLANMSHEIRTPMNAILGMLQLVQHTDMTP---- 932

Query: 622  RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
            +  +Y +  + +   +L ++ND+LD SKI++GK+N+   P SL+E + E   L+      
Sbjct: 933  QQQDYVSKTEVAAQSLLGLLNDILDFSKIDAGKLNVDLHPCSLEEIMRELAVLLAANMRR 992

Query: 682  KRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI--IISTTHTSNE-EV 737
            K I +      +IP  +LAD + ++Q+ LN+  NAI FT  G  I  + +   +S++  +
Sbjct: 993  KHIEVLFDLDPSIPELVLADKQRLQQVLLNLAGNAIKFTAQGHVILQVFNLKLSSHKVRL 1052

Query: 738  ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
             + V DTG+G+   +L+K  + F Q  +S   R  GTGLGL + K +V+    +  + S 
Sbjct: 1053 RISVADTGIGINVSQLDKIFQGFMQAESSTSRRFGGTGLGLAITKRLVELMGAELEVESQ 1112

Query: 798  PAKGTLIEI 806
              +G+    
Sbjct: 1113 EGQGSRFWF 1121



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 59/430 (13%), Positives = 124/430 (28%), Gaps = 37/430 (8%)

Query: 168 IYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ 227
               + EF G RGFG +   RV     A      K         +  +  + E++ I   
Sbjct: 92  TRDIDIEFPGARGFGFIR--RVKPIDEASFIAKVKHAGWPDFSIRQLTPHDNERFVIELV 149

Query: 228 QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287
           +    ++       +                   L+   + +    +     L      +
Sbjct: 150 EPVERNMAAIGLDIASETNRYQAAYQALLSGKVHLSGPITLVQATGNPQQSFLILLPIYR 209

Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPS 347
                +       E       P +     E  NLT ET         +        +NP 
Sbjct: 210 TGNIPETVKLRKAEGFGWSYAPLVIDEVLEDLNLTQETTK-------LELKDVTDNSNPV 262

Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
               T       +                  +     +           S   + +    
Sbjct: 263 LFYQTHAFDTAKL------------------SRYSTTLSTNIFGRQWTISVSAYPVFIE- 303

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
             SL +T      A     ++    +       +  KR ++ E  +  +ILE + D I  
Sbjct: 304 --SLHLTRPSLVLAYGLLMSLLFAVLMAFYSRNKQQKRLLDAENARRANILEHSLDAIIS 361

Query: 468 INREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
            + EG+I   N+    +FGY  ++++      + +      +      ++LS +  Q   
Sbjct: 362 YDSEGLITGWNQGAEHIFGYTKDEVMQGANLGLIVPAANKEIEWTQFKQVLSGEAIQ--N 419

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKES 582
            + +   KE+  LS  +    +       +    T+ DI+  +  + ++       E++ 
Sbjct: 420 AVGVHHDKEQNKLSTSMTALPIYNHVGVIVGVSQTIRDITAAQDAERQIHELNASLERKV 479

Query: 583 SHKSDFLARV 592
             ++  L  V
Sbjct: 480 HLRTQALEHV 489


>gi|209524981|ref|ZP_03273526.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
 gi|209494630|gb|EDZ94940.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
          Length = 1242

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 94/518 (18%), Positives = 196/518 (37%), Gaps = 36/518 (6%)

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYS-------HGNLFYANPSFLLLTKYKSVDDI 360
             +   + ++   L    V        +            + Y N +F  LT Y+    I
Sbjct: 311 DITEGKHQEQRLRLLESAVSHTTDAIAIAQSNPENTTDSQIVYINKAFTNLTGYQPEGII 370

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
                +       +  D +  +   +  +     +    L   + N     A        
Sbjct: 371 GKNPNI------LQGIDTDEQQLKRVEVALSQSESIQVELINYRQNGSKYWA-DLSISPV 423

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
            +   +      ++ +    ++    ++ E  QL  I+      +AI++     ++ +  
Sbjct: 424 TDDTGKVSHFVFVQRDITSRKLKTSTLQKEREQLQQIITNAPVAVAILDCSMRYIAYSDR 483

Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
             + +  P E ++ +         +         + ++ ++    E +       +    
Sbjct: 484 WLQEYHLPQESLVGRSHYEIFPHIS-ETCRELYRKAIAGEVISCSEDVMTYPDGSQGYFR 542

Query: 541 LRIII--KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
             I              +  + I E  +        ++ A + S  KS FLA +SHEIRT
Sbjct: 543 WAIHPWYTLNQEIGGVVIATYPIDELVKA-------REAALENSRLKSQFLANMSHEIRT 595

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
           P+  ++G + ++           +  ++   I  S + +L I+ND+LD SK+E+ ++ L 
Sbjct: 596 PMNGVLGMTGLLLKTELDT----KQKDFVQAIRTSADHLLSIINDILDFSKLEAQEIELE 651

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIH 717
                L+E +   I L+   A  K I +      N+PR +  D   ++Q+ LN++SN I 
Sbjct: 652 ELDFDLEECLENIIDLLAAQAENKGIELAAIVDRNVPRYLRGDPGRLRQVLLNLMSNGIK 711

Query: 718 FTPSGGQIIISTTHTSNEEV------ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           FTP+G ++ +  +   N ++         V+DTG+G+     E+  + F Q+  S   + 
Sbjct: 712 FTPAG-EVTLRVSRPPNYDINAPLTLRYEVQDTGIGIPAEAQERVFEAFSQVDASTTRKF 770

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            GTGLGL + K +++   G+  + S   +G+      P
Sbjct: 771 GGTGLGLVICKQLLEVMGGEIGLESVVDQGSTFWFTLP 808



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 35/389 (8%), Positives = 100/389 (25%), Gaps = 32/389 (8%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTT 148
           D+      ++ +    +   A +++G    D+               +            
Sbjct: 218 DSQNRYIMVNRQCEIFLNRPAQEILGKTNYDLLPTTIAQKLQESDQKVFDSGRVQQTHQN 277

Query: 149 LWPIEGTN-LYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF--- 204
           +    G    ++ ++    PI+++NR        G               + L+      
Sbjct: 278 IVNYHGKIRQFISVNF---PIFNQNRHILAVCNIGS--DITEGKHQEQRLRLLESAVSHT 332

Query: 205 -SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH----KDDVLKTEKY 259
              +   +    +    +    ++            +              +  LK  + 
Sbjct: 333 TDAIAIAQSNPENTTDSQIVYINKAFTNLTGYQPEGIIGKNPNILQGIDTDEQQLKRVEV 392

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY----F 315
            L  SE  S+  +   +  N ++Y        + +++ +   ++  +   +         
Sbjct: 393 ALSQSE--SIQVELINYRQNGSKYWADLSISPVTDDTGKVSHFVFVQRDITSRKLKTSTL 450

Query: 316 DEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
            +      + +   P+   +          +  +L          +     +        
Sbjct: 451 QKEREQLQQIITNAPVAVAILDCSMRYIAYSDRWLQEYH------LPQESLVGRSHYEIF 504

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
              +   + +         I+ S  + T     +        P+   NQ    +    I 
Sbjct: 505 PHISETCRELYRKAIAGEVISCSEDVMTYPDGSQGYFRWAIHPWYTLNQE---IGGVVIA 561

Query: 435 PEDVDTRINKRKMEIEVMQLCS-ILEATS 462
              +D  +  R+  +E  +L S  L   S
Sbjct: 562 TYPIDELVKAREAALENSRLKSQFLANMS 590



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 47/143 (32%), Gaps = 2/143 (1%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
                 E   L +IL+     I   + +   +  NR        P ++IL K     L  
Sbjct: 193 ATNATQEKHLLQAILDNCPALICAKDSQNRYIMVNRQCEIFLNRPAQEILGKTNYDLLPT 252

Query: 504 NTPSVMNHYLTEIL-SLDLRQTLEKITLGSTKEEKLLSLRIII-KKLPFSSCYSLTMHDI 561
                +     ++  S  ++QT + I     K  + +S+   I  +            DI
Sbjct: 253 TIAQKLQESDQKVFDSGRVQQTHQNIVNYHGKIRQFISVNFPIFNQNRHILAVCNIGSDI 312

Query: 562 SEWKQEKNKLSHAKKIAEKESSH 584
           +E K ++ +L   +      +  
Sbjct: 313 TEGKHQEQRLRLLESAVSHTTDA 335


>gi|291570781|dbj|BAI93053.1| two-component hybrid histidine kinase [Arthrospira platensis
           NIES-39]
          Length = 1235

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 98/518 (18%), Positives = 193/518 (37%), Gaps = 36/518 (6%)

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYS-------HGNLFYANPSFLLLTKYKSVDDI 360
             +     ++   L    V        +            + Y N +F  LT Y+  D I
Sbjct: 304 DITEGKRQEQRLRLLESAVSHTTDAIAIAQCNPEKTTDSQIVYINKAFTNLTGYQPEDII 363

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
                +         +D   +K V +  S    I      +       +           
Sbjct: 364 GKNPNI----LQGTDTDEQQLKRVEVALSQGQSIQVELINYR---QNRSKYWADLSISPV 416

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
            +   +      ++ +    ++    ++ E  QL  I+      +AI++     ++ +  
Sbjct: 417 TDDTGKVSHFVFVQRDITSRKLKTSTLQREREQLQQIITNAPVAVAILDCSMRYIAYSDR 476

Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
             + +  P E ++ +         + +         ++ ++    E   +          
Sbjct: 477 WLQEYHLPPESLVGRSHYEIFPHISETCT-EVYRRAIAGEVISCSEDNMIYPDGSHGYFR 535

Query: 541 LRIII--KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
             I              +  + I E  +        ++ A + S  KS FLA +SHEIRT
Sbjct: 536 WAIHPWYTLNQEIGGVVIATYPIDELVKA-------REAALENSRLKSQFLANMSHEIRT 588

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
           P+  ++G + ++           +  ++   I  S N +L I+ND+LD SK+E+ ++ L 
Sbjct: 589 PMNGVLGMTGLLLKTELDT----KQKDFVQAIRTSANHLLAIINDILDFSKLEAQEIELE 644

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIH 717
                L+E +   I L+   A  K I +      N+PR +  D   ++Q+ LN++SN I 
Sbjct: 645 DLDFDLEECLENIIDLLAAQAENKGIELAAIVDRNVPRYLRGDPGRLRQVLLNLMSNGIK 704

Query: 718 FTPSGGQIIISTTHTSNEEV------ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           FTP+G ++ +  +   N ++         V+DTG+G+      +  + F Q+  S   + 
Sbjct: 705 FTPAG-EVTLRVSRPPNYDINAPLILRYEVQDTGIGIPPESHGRLFEAFSQVDASTTRKF 763

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            GTGLGL + K +VD   G+  + S   +G+      P
Sbjct: 764 GGTGLGLVICKQLVDVMGGEIGLESVVGQGSNFWFTLP 801



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 43/290 (14%), Positives = 90/290 (31%), Gaps = 42/290 (14%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
                 E   L +IL+     I   + +   +  NR        P ++IL K        
Sbjct: 186 ATNATQEKHLLQAILDNCPALICAKDSQNRYIMVNRQCEIFLNRPAQEILGKTNYDLFPT 245

Query: 504 NTPSVMNHYLTEIL-SLDLRQTLEKITLGSTKEEKLLSLRIII-KKLPFSSCYSLTMHDI 561
                +     ++  S  ++QT + I     K  + +S+   I  +            DI
Sbjct: 246 TIAQKLQESDQKVFDSGRVQQTHQNIVNYHGKIRQFISVNFPIFNQNRHILAVCNIGSDI 305

Query: 562 SEWKQEKNKLSHAKKIAEKESSHK------------SDFLARVSHEIR---TPLTA---- 602
           +E K+++ +L   +      +               S  +      I    T LT     
Sbjct: 306 TEGKRQEQRLRLLESAVSHTTDAIAIAQCNPEKTTDSQIVY-----INKAFTNLTGYQPE 360

Query: 603 -IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL-DIVNDLLDISKIESGKMNLHFE 660
            IIG +  I     G   + + ++        G  +  +++N      +    K    + 
Sbjct: 361 DIIGKNPNILQ---GTDTDEQQLKRVEVALSQGQSIQVELIN-----YRQNRSKY---WA 409

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710
            +S+     +   +      ++ I  R    + + R   +   ++QI  N
Sbjct: 410 DLSISPVTDDTGKVSHFVFVQRDITSRKLKTSTLQR---EREQLQQIITN 456



 Score = 60.0 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/387 (8%), Positives = 93/387 (24%), Gaps = 28/387 (7%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTT 148
           D+      ++ +    +   A +++G    D+               +            
Sbjct: 211 DSQNRYIMVNRQCEIFLNRPAQEILGKTNYDLFPTTIAQKLQESDQKVFDSGRVQQTHQN 270

Query: 149 LWPIEGTN-LYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF--- 204
           +    G    ++ ++    PI+++NR        G               + L+      
Sbjct: 271 IVNYHGKIRQFISVNF---PIFNQNRHILAVCNIGS--DITEGKRQEQRLRLLESAVSHT 325

Query: 205 -SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE--KYPL 261
              +   +         +    ++            +           D  + +  +  +
Sbjct: 326 TDAIAIAQCNPEKTTDSQIVYINKAFTNLTGYQPEDIIGKNPNILQGTDTDEQQLKRVEV 385

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY----FDE 317
             S+  S+  +   +  N ++Y        + +++ +   ++  +   +           
Sbjct: 386 ALSQGQSIQVELINYRQNRSKYWADLSISPVTDDTGKVSHFVFVQRDITSRKLKTSTLQR 445

Query: 318 GENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
                 + +   P+   +          +  +L          +                
Sbjct: 446 EREQLQQIITNAPVAVAILDCSMRYIAYSDRWLQEYHLPPESLVG------RSHYEIFPH 499

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
            +     V         I+ S                   P+   NQ    +    I   
Sbjct: 500 ISETCTEVYRRAIAGEVISCSEDNMIYPDGSHGYFRWAIHPWYTLNQE---IGGVVIATY 556

Query: 437 DVDTRINKRKMEIEVMQLCS-ILEATS 462
            +D  +  R+  +E  +L S  L   S
Sbjct: 557 PIDELVKAREAALENSRLKSQFLANMS 583


>gi|254413568|ref|ZP_05027338.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196179675|gb|EDX74669.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 1315

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 111/657 (16%), Positives = 230/657 (35%), Gaps = 45/657 (6%)

Query: 185  HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244
                                  +H++        +    +    +  P     +   +  
Sbjct: 438  TALTESESRLNQILEAIPVGISVHDVSGQIIYANQTSKQLLGIDT-LPEATTTDLSGTFH 496

Query: 245  EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFH-TINLNQYTKKQYFGTLQNNSKESFEYL 303
             Y A  +++   E+ PL+ + +    + +D    +   +   + Y   ++N +      +
Sbjct: 497  VYQAESEELYPVEQMPLVRAFQGEKVKVDDMEIRLPDRRIPLEVYGTPIRNETGTIVAAI 556

Query: 304  SHRNHPSLSAYFDEGENLTPETVDK--------CPIPFFVYSHGNLFY--------ANPS 347
            +  +  +     ++      +T+                +   GN  +         +  
Sbjct: 557  ATFSDITERKQTEQILADYNQTLATQVRERTVELNEAQRLAHLGNWSFDVNSKKISWSDE 616

Query: 348  FLLLTKYKSVDDIEIAGGLSTLLDAPKLSD-NNAIKPVMLYRSDRTCIAASARLHTIQWN 406
               +                 LL      D       +    ++            I  +
Sbjct: 617  VFRICGRDPSQ---SEPSYEQLLQQIHRDDVAQFQHDIEQAMTEGKSYE---HEQRIVRS 670

Query: 407  RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
              +   +        N   + +   G   +  + ++ + ++     +   + E   D   
Sbjct: 671  DGSIRYVLAKGEAILNSSGQVVQLFGTVQDISERKLIEEQLRESEEKFRQLAENIQDVFF 730

Query: 467  IINREGIILSTNRAVSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
            I++  G IL  N    +++    + +    + +   +           +   L       
Sbjct: 731  ILSYTGEILYINPVYEQIWQRTCQSLYDNPRSWLDSVFPEDYPSTVAAMERQLQDSTDFD 790

Query: 525  LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
                      E + +  R        +  +     DI++ KQ +  L+ AK  AE  +  
Sbjct: 791  QVYRITRPNGEIRWIRARSFPVPHQKTYRFVGIAEDITDRKQIELALTEAKDAAETANRA 850

Query: 585  KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
            KS FLA +SHE+RTPL AI+GF+++++     P     Y E    I RS   +L ++N +
Sbjct: 851  KSTFLANMSHELRTPLNAIMGFTQLMQRSSTFPAD---YQENLQIIYRSSEHLLTLINQV 907

Query: 645  LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRS 703
            LD+SKIE+G++ L+     L   + +  +L Q+ A +K + +   +++ +P+ +  D   
Sbjct: 908  LDLSKIEAGRITLNQTVFDLYALLRDVENLFQIKARDKGLQLLFDYSDQVPQYVQTDAVK 967

Query: 704  VKQIALNILSNAIHFTPSGGQIIISTTH------------TSNEEVILRVRDTGVGMTNY 751
            ++Q+ +N+LSNA  FT  GG I +  +                  +   + DTG GM   
Sbjct: 968  LRQVLINLLSNAFKFTQEGG-ISVKVSRGIDVGETPTANKPEEITLQFEIEDTGAGMAAE 1026

Query: 752  ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            ELE     F Q    +Q + EGTGLGL +++  V    G   + S   +GT+     
Sbjct: 1027 ELESIFDAFIQSKTGKQHQ-EGTGLGLSISRKFVQLMGGDLTVASQVDQGTVFRFEI 1082



 Score = 78.9 bits (193), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 27/201 (13%), Positives = 62/201 (30%), Gaps = 17/201 (8%)

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
           E S+ +                 + ++    + +     +     +L  ILEA   GI++
Sbjct: 401 EQSVVIQRHDEVGELANSFVQMASQLQASFTELQTLNTALTESESRLNQILEAIPVGISV 460

Query: 468 INREGIILSTNRAVSKLFGYPV-EDILRKPFTVFLE------QNTPSVMNHYLTEILSLD 520
            +  G I+  N+   +L G     +      +          +    V    L      +
Sbjct: 461 HDVSGQIIYANQTSKQLLGIDTLPEATTTDLSGTFHVYQAESEELYPVEQMPLVRAFQGE 520

Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKK 576
             +  +          + + L +    +   +        T  DI+E KQ +  L+   +
Sbjct: 521 KVKVDDMEIRLPD---RRIPLEVYGTPIRNETGTIVAAIATFSDITERKQTEQILADYNQ 577

Query: 577 IAEKESSHKSDFLA---RVSH 594
               +   ++  L    R++H
Sbjct: 578 TLATQVRERTVELNEAQRLAH 598



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/393 (9%), Positives = 95/393 (24%), Gaps = 42/393 (10%)

Query: 90  DAHGYLKEISEELPKTIGNYA-FKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTWYGKT 147
           D  G +   ++   + +G     +     L     +   +       + +     + G+ 
Sbjct: 462 DVSGQIIYANQTSKQLLGIDTLPEATTTDLSGTFHVYQAESEELYPVEQMPLVRAFQGEK 521

Query: 148 TL---WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
                  I   +  +P+++   PI +                         +   L    
Sbjct: 522 VKVDDMEIRLPDRRIPLEVYGTPIRNETGTIVAA--IATFSDITERKQTEQI---LADYN 576

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY----- 259
             L    +  +    E   +    +    +  K    S   +     D  ++E       
Sbjct: 577 QTLATQVRERTVELNEAQRLAHLGNWSFDVNSKKISWSDEVFRICGRDPSQSEPSYEQLL 636

Query: 260 ---------------PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
                              +E  S   ++     + +          + N+S +  +   
Sbjct: 637 QQIHRDDVAQFQHDIEQAMTEGKSYEHEQRIVRSDGSIRYVLAKGEAILNSSGQVVQLFG 696

Query: 305 HRNHPSLSAYFDEGENLTPE----TVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDD 359
                S     +E    + E      +     FF+ S  G + Y NP +  + +      
Sbjct: 697 TVQDISERKLIEEQLRESEEKFRQLAENIQDVFFILSYTGEILYINPVYEQIWQRTCQSL 756

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
            +               ++       + R  +       +++ I         +    F 
Sbjct: 757 YDNP----RSWLDSVFPEDYPSTVAAMERQLQDSTDFD-QVYRITRPNGEIRWIRARSFP 811

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
             +Q        GI  +  D +  +  +     
Sbjct: 812 VPHQKTY--RFVGIAEDITDRKQIELALTEAKD 842


>gi|209523774|ref|ZP_03272327.1| PAS/PAC sensor hybrid histidine kinase [Arthrospira maxima CS-328]
 gi|209495806|gb|EDZ96108.1| PAS/PAC sensor hybrid histidine kinase [Arthrospira maxima CS-328]
          Length = 885

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 123/632 (19%), Positives = 253/632 (40%), Gaps = 27/632 (4%)

Query: 191 NDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL--TEYYA 248
               A  +   +   HL  I     S E    ++ +           + ++       + 
Sbjct: 16  ETALAESQNRLRDLFHLAPIGIAEISTEGYFLEVNTAFCRWVGYSQADLINLDFNEITHP 75

Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINL----NQYTKKQYFGTLQNNSKESFEYLS 304
              D+ + +   L+T +      ++ +   +        T         N      + + 
Sbjct: 76  EDGDICRQKFEQLITQQIDEYTLEKRYRHRDGHWVYGIVTCYLRLDVKGNPLCAIAQIID 135

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY--ANPSFLLLTKYKSVDDIEI 362
                       E E      +D  P   F +   NL +   N ++ +     S + +  
Sbjct: 136 ITQGKRSEQEIREKEEYLRLLLDNIPQQVF-WKDTNLVFRGCNRNWAIAAGLDSSESVVG 194

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
                 L    ++++    K   +  S    +   A    +       + +        +
Sbjct: 195 KTDFD-LFADAEIAEFYREKDRQVLESRTPEMNVVAPKQKL-GPGGRRIWLDVSRIPMLD 252

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
                +   G+  +  +++    K+ +   Q    ++ + D +   +  G     N A  
Sbjct: 253 SQGNVLGILGVLEDITESKEIDEKLRLT--QFS--IDKSRDYVLFSDINGRFFYVNEAAC 308

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
           ++ GY  E++L           +P   +    ++       +    +   TK  + +++ 
Sbjct: 309 QILGYSKEELLTMEVGDIDPLASPGGWSISWDDLRDQG---SFTFESTHYTKTGQAIAVE 365

Query: 543 IIIKKLPFSSCY--SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
           I +  L ++        + DI + KQ +  L  AK+ AE  S  KS+FLAR+SHE+RTPL
Sbjct: 366 ITLSHLEYNHREYGCAVVRDIRDRKQTEIALQQAKEAAETASRAKSEFLARMSHELRTPL 425

Query: 601 TAIIGFSEVIKNQRFGPLGNP--RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
            AI+GF+++++ + +     P   + E+   I RSG  +L+++ND+L++SKIE+G+++L+
Sbjct: 426 NAILGFTQLMERELYHNPNIPLFDHKEHLEIIGRSGEHLLELINDVLEMSKIEAGRVSLN 485

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIH 717
               +L   ++    +++L A+ K++ +  +  + IP  I AD + ++Q  +N+L NAI 
Sbjct: 486 PTNFNLISLLNSLREMLELPASSKKLTLDFAIDDQIPTYIYADEQKLRQCLINLLGNAIK 545

Query: 718 FTPSGGQI-IISTTH--TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           FT  GG I  +          ++   V DTG G+   E++   +PF Q    +  + +GT
Sbjct: 546 FTVKGGVILRVKLGKFNHDFGQLWFEVEDTGPGIDPSEMDLLFEPFSQTETGRNSQ-QGT 604

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           GLGL + +  +    G+  + S   KGT+   
Sbjct: 605 GLGLSITQKFIGLMGGEIQVSSERGKGTIFRF 636



 Score = 97.4 bits (241), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 42/395 (10%), Positives = 94/395 (23%), Gaps = 26/395 (6%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL--KRQNTWYG 145
            I   GY  E++    + +G     +I +   +++     D      + L  ++ + +  
Sbjct: 39  EISTEGYFLEVNTAFCRWVGYSQADLINLDFNEITHPEDGDICRQKFEQLITQQIDEYTL 98

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +      +G   +V   +                    +             +  ++   
Sbjct: 99  EKRYRHRDGH--WVYGIVTCYLRLDVKGNP--LCAIAQIIDITQGKRSEQEIREKEEYLR 154

Query: 206 HLHEIKKGHSSVEKEKYDIFS----QQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
            L +        +                      ++ V           ++ +  +   
Sbjct: 155 LLLDNIPQQVFWKDTNLVFRGCNRNWAIAAGLDSSESVVGKTDFDLFADAEIAEFYREKD 214

Query: 262 LTSEESSLPEQEDF-----HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
               ES  PE               +         + ++       L      + S   D
Sbjct: 215 RQVLESRTPEMNVVAPKQKLGPGGRRIWLDVSRIPMLDSQGNVLGILGVLEDITESKEID 274

Query: 317 EGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDI-EIAGGLSTLLD--- 371
           E   LT  ++DK          +G  FY N +   +  Y   + +    G +  L     
Sbjct: 275 EKLRLTQFSIDKSRDYVLFSDINGRFFYVNEAACQILGYSKEELLTMEVGDIDPLASPGG 334

Query: 372 -----APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
                       +       Y      IA    L  +++N                Q   
Sbjct: 335 WSISWDDLRDQGSFTFESTHYTKTGQAIAVEITLSHLEYNHREYGCAVVRDIRDRKQTEI 394

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
            + Q     E      ++    +    L + L A 
Sbjct: 395 ALQQAKEAAETASRAKSEFLARMSHE-LRTPLNAI 428



 Score = 75.4 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 17/143 (11%), Positives = 46/143 (32%), Gaps = 5/143 (3%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +  +  +     +L  +      GIA I+ EG  L  N A  +  GY   D++   F   
Sbjct: 13  QQLETALAESQNRLRDLFHLAPIGIAEISTEGYFLEVNTAFCRWVGYSQADLINLDFNEI 72

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSL 556
                  +      ++++  + +          ++   +   +                 
Sbjct: 73  THPEDGDICRQKFEQLITQQIDE-YTLEKRYRHRDGHWVYGIVTCYLRLDVKGNPLCAIA 131

Query: 557 TMHDISEWKQEKNKLSHAKKIAE 579
            + DI++ K+ + ++   ++   
Sbjct: 132 QIIDITQGKRSEQEIREKEEYLR 154


>gi|157273465|gb|ABV27364.1| PAS/PAC sensor hybrid histidine kinase [Candidatus
           Chloracidobacterium thermophilum]
          Length = 813

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 124/767 (16%), Positives = 251/767 (32%), Gaps = 71/767 (9%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +   G     S    + +G  A ++  M + + S ++  +    I   L+ +     +  
Sbjct: 67  LGLDGRRLAWSPAGERILGYSAEEIQAMSVREFSHLVVPEHRARIRQALRDKLEGGLEEA 126

Query: 149 LWPIE---GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
            +  +        V +++ +  ++ R+      +   I+             +  + ++ 
Sbjct: 127 HYEADFVAKDGRRVTLEVNSQLLF-RDGRPVAIQ--AILRDITNRKRIEQALRESEARYR 183

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHL-----RMKNKVSSLTEYYAHKDDVLKTEKYP 260
            L E       V   +    S       +          ++                   
Sbjct: 184 DLFENANDIVYVHDFEGRFLSINRGAERVLGYTPADTAYLTLTHIVAPEHRARALQAIAD 243

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN---NSKESFEYLSHRNHPSLSAYFDE 317
            L  +      + D    N  + T +                           +     E
Sbjct: 244 KLAGKAEMTQYELDVIAKNGQRVTLEVSSRLFYVHGKPVGIHGTARDVTKRRQMEKALRE 303

Query: 318 GENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
            E       D      + +   G +   NP+   L  Y+  +       L   L  P+  
Sbjct: 304 SEARYRTLFDSAQDVIYCHDLQGRVLEINPAAEKLFGYRREEA-RSVNALD--LVVPESR 360

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
                    L     T +   A L  +  +    +          N  P  +   GI  +
Sbjct: 361 PAVLSAIDRLLAGHETTVRYEATL--LTRDGRRIILEFITWLVLENGKP--VAFQGIGRD 416

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             + R+++R +     +   I +A   GI +++ +G IL  NRAV     Y  E+++ + 
Sbjct: 417 LTERRLSERALRESEERFRQIFDAAPLGIVLVSLDGKILRANRAVCNWLEYTPEEVVGRR 476

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--- 553
            T F+              +       + +      TK  +++  R  +  +  S     
Sbjct: 477 HTEFILPEDVEETMRLARRLAEDPKPSSFQAERRCLTKSGQVVWGRFTVVVVRDSGGKPQ 536

Query: 554 -YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
                + DI++ +  + ++ HA+K+            A ++HE    LT + G++  +  
Sbjct: 537 YLLGMIEDITQQRMLEEQVRHAQKM-----EAVGQLAAGIAHEFNNLLTVVAGYA-GLLE 590

Query: 613 QRFGPLGNPR-----YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
           +R  P    R        YA  I  + +    +   LL   +    +   H  P+ L+E 
Sbjct: 591 RRLSPTSIERSSPDVLHRYAKDILTAVSRASVLTGQLLAFGR----RQQQHLAPLDLNEL 646

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727
           V + + +++       I I T+ A ++  ++AD + ++Q+  N+  NA    P GG + +
Sbjct: 647 VLDTVRMLRPLLEPH-ISIVTNLAPDLGIVVADRQQLEQVITNLAVNARDAMPKGGTLTL 705

Query: 728 ST-------------------------THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
           +T                         T   +  V+L V DTGVGM+     +  +PF  
Sbjct: 706 TTCNVWHESPPEMNNRTTFRQTTARDETLQMHPYVMLAVTDTGVGMSEEVRRRIFEPFFT 765

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
                   G+GTGLGL + + ++  N G   + S   KGT   I+ P
Sbjct: 766 TKP----VGKGTGLGLSVVEGIIAQNKGFITVESEVGKGTTFRILLP 808



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 25/179 (13%), Positives = 63/179 (35%), Gaps = 9/179 (5%)

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
                    +E    +     + +    ++   I +  SD I ++  +G  L+ + A  +
Sbjct: 23  EAAQQRIAQLEAALQEAGRTIQALRESELRYREIFDGASDIILVLGLDGRRLAWSPAGER 82

Query: 484 LFGYPVEDILR---KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
           + GY  E+I     + F+  +     + +   L + L   L +          K+ + ++
Sbjct: 83  ILGYSAEEIQAMSVREFSHLVVPEHRARIRQALRDKLEGGLEEA-HYEADFVAKDGRRVT 141

Query: 541 LRIIIKKLPFSSCYS---LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
           L +  + L            + DI+  K+ +  L  ++        + +D +    H+ 
Sbjct: 142 LEVNSQLLFRDGRPVAIQAILRDITNRKRIEQALRESEARYRDLFENANDIVYV--HDF 198


>gi|298248741|ref|ZP_06972546.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297551400|gb|EFH85266.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 821

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 114/731 (15%), Positives = 251/731 (34%), Gaps = 49/731 (6%)

Query: 97  EISEELPKTIGNYAFKMIGMRLC--DVSDILHIDPNNH-IGDLLKRQNTWYGKTTLWPIE 153
             ++     IG    +    R            +               +  +  L   +
Sbjct: 117 YTNQRWRDYIGFTVEQTQSDRWAYLQFIHPDDREGARAHRQHAQDTGEMYEHEERLRNSQ 176

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
            T  Y      A+P+Y    +    + FG               K  ++ +  L E    
Sbjct: 177 -TGTYRWFLTRAMPVYDEAGQLV--KWFGTCTDIDEQKRTEQRLKESEENWQTLAETVPQ 233

Query: 214 HSSVEKEK--YDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271
                +     D  +Q++       + ++     +Y    D  + E+  L  +  + +P 
Sbjct: 234 LVWRVQPDSWVDYVNQRACDYGQTTREQLLGHGWHYLLHPDDKERERVTLDHAFRTGIPY 293

Query: 272 QEDFHTINLN---QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE---- 324
           + +F                   + + + +  ++             ++    + E    
Sbjct: 294 EVEFRLREGQTGCYRWFLTRGMPVCDETGQVIKWFGTCTDIEEQKRAEQQLKESEENLRV 353

Query: 325 TVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
             +  P   +       L Y N  +   T + + + ++  G          L    A   
Sbjct: 354 LAETVPQLVWTTRADNRLDYCNQRYCEYT-HAAFEQLQGHGW------RQFLHPEEAEGI 406

Query: 384 VMLYRSD-RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
           + L      T     +                       ++  + +   G   +  D + 
Sbjct: 407 LALRHQTLETGEPFESECRLRNGQTGEYRWFLARGTPVRDETGQIVRWFGTNTDIEDQKR 466

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILS-TNRAVSKLFGYPVEDILRKPF--TV 499
            +  +     ++ +++++   GI  +  E  +L   N A   L GY  ED+  K      
Sbjct: 467 IEEALRQSQERIRALIDSNIIGIVSVEGEEEVLVEANEAFLHLTGYTQEDMRSKTLNRVK 526

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI-IIKKLPFSSCYSLTM 558
                  S     + E+ +      LE   +   K+   L + +  +            +
Sbjct: 527 ITPPEHASFFERAIQEVNARGQHTPLETEVIC--KDGSRLPVLVGSVIFQERPRQTISFV 584

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            D S  K+ + +              K  F++  SHE++TPLTA+   +  + +++    
Sbjct: 585 LDNSARKELEQR--------------KDAFISMASHELKTPLTALKLQTA-LLHRQLAKQ 629

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
           G P      + ++   N V  +V++LLD+SKI++G++    E V+LD  + E    +Q  
Sbjct: 630 GIPASAPALSNMEGQINKVTRLVDELLDVSKIQAGRLEYLQETVNLDALLREITETMQQT 689

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738
           +   RI++R     ++   + D   + Q+ +N++SNAI ++P    + +  + + +  V 
Sbjct: 690 SPSHRIVVRGIVETSL---IGDRDRLGQVFINLISNAIKYSPDAKTVEMDLSASEDA-VT 745

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           ++VRD G+G+   + +K    F ++ + +Q    G G+GL +   +V  + G   + S  
Sbjct: 746 IQVRDHGLGIPREQCDKIFDRFYRVTDPKQKAIHGLGMGLYIVAEIVKRHRGTITVDSEV 805

Query: 799 AKGTLIEIIFP 809
            KG+   +  P
Sbjct: 806 GKGSTFTVTLP 816



 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 28/368 (7%), Positives = 83/368 (22%), Gaps = 21/368 (5%)

Query: 236 MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINL---NQYTKKQYFGTL 292
              ++              +       T+  +    + ++                    
Sbjct: 2   TPEQLQGDRWIACLHPADRQRTLEAWQTAIRTQTLYEVEYRMQQGRTGAYRWFLARGMPR 61

Query: 293 QNNSKESFEYLSHRNHPSLSAYFDEGENLTPE----TVDKCPIPFFVYSHGNL-FYANPS 347
           ++N      +             ++    + E      +  P    V    N   Y N  
Sbjct: 62  KDNQGTILHWFGTCTDIEDRKQAEQQLKASEENWRVLAETLPQLVMVARPNNQNEYTNQR 121

Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD-RTCIAASARLHTIQWN 406
           +     +               L      D    +    +  D         RL   Q  
Sbjct: 122 WRDYIGFTVEQ---TQSDRWAYLQFIHPDDREGARAHRQHAQDTGEMYEHEERLRNSQT- 177

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
                          ++  + +   G   +  + +  +++++       ++ E     + 
Sbjct: 178 -GTYRWFLTRAMPVYDEAGQLVKWFGTCTDIDEQKRTEQRLKESEENWQTLAETVPQLVW 236

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
            +  +  +   N+          E +L   +   L  +        L       +    E
Sbjct: 237 RVQPDSWVDYVNQRACDYGQTTREQLLGHGWHYLLHPDDKERERVTLDHAFRTGIP--YE 294

Query: 527 KITLGSTKEEKLLSLRIIIK-KLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKE 581
                   +       +     +   +     +  T  DI E K+ + +L  +++     
Sbjct: 295 VEFRLREGQTGCYRWFLTRGMPVCDETGQVIKWFGTCTDIEEQKRAEQQLKESEENLRVL 354

Query: 582 SSHKSDFL 589
           +      +
Sbjct: 355 AETVPQLV 362



 Score =  105 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 34/414 (8%), Positives = 99/414 (23%), Gaps = 20/414 (4%)

Query: 55  TDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI 114
           TD +++  +     +SE  +         +  W +    ++  +++           +++
Sbjct: 205 TDIDEQKRTEQRLKESEENWQTLAETVP-QLVWRVQPDSWVDYVNQRACDYGQTTREQLL 263

Query: 115 GMRLCDVSDILHIDPNNH-IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNR 173
           G     +      +     +    +    +           T  Y       +P+     
Sbjct: 264 GHGWHYLLHPDDKERERVTLDHAFRTGIPYE-VEFRLREGQTGCYRWFLTRGMPVCDETG 322

Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP--- 230
           +    + FG               K  ++    L E         +    +         
Sbjct: 323 QVI--KWFGTCTDIEEQKRAEQQLKESEENLRVLAETVPQLVWTTRADNRLDYCNQRYCE 380

Query: 231 PPHLRMKNKVSSLTEYYAHKDDV--LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288
             H   +         + H ++   +   ++  L + E    E    +            
Sbjct: 381 YTHAAFEQLQGHGWRQFLHPEEAEGILALRHQTLETGEPFESECRLRNGQTGEYRWFLAR 440

Query: 289 FGTLQNNSKESFEYLSHRNHP----SLSAYFDEGENLTPETVDKCPIPF--FVYSHGNLF 342
              +++ + +   +            +     + +      +D   I           L 
Sbjct: 441 GTPVRDETGQIVRWFGTNTDIEDQKRIEEALRQSQERIRALIDSNIIGIVSVEGEEEVLV 500

Query: 343 YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT 402
            AN +FL LT Y   D    +  L+ +   P    +   + +    +          +  
Sbjct: 501 EANEAFLHLTGYTQEDM--RSKTLNRVKITPPEHASFFERAIQEVNARGQHTPLETEV-- 556

Query: 403 IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
           I  +      +      +                    +     + +   +L +
Sbjct: 557 ICKDGSRLPVLVGSVIFQERPRQTISFVLDNSARKELEQRKDAFISMASHELKT 610



 Score = 74.3 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 36/411 (8%), Positives = 91/411 (22%), Gaps = 33/411 (8%)

Query: 55  TDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI 114
           TD  ++  +     +SE            +  W   A   L   ++   +       ++ 
Sbjct: 332 TDIEEQKRAEQQLKESEENLRVLAETVP-QLVWTTRADNRLDYCNQRYCEYTHAAFEQLQ 390

Query: 115 GMRLCDVSDILHIDPNNHIGDL-LKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNR 173
           G            +    +    L+    +  +        T  Y        P+     
Sbjct: 391 GHGWRQFLHPEEAEGILALRHQTLETGEPFESEC-RLRNGQTGEYRWFLARGTPVRDETG 449

Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH 233
           +    R FG               ++  ++   L +         + + ++  + +    
Sbjct: 450 QIV--RWFGTNTDIEDQKRIEEALRQSQERIRALIDSNIIGIVSVEGEEEVLVEANEAFL 507

Query: 234 LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293
                    +              +  +   E +S  E+     +N            + 
Sbjct: 508 HLTGYTQEDMR--------SKTLNRVKITPPEHASFFER-AIQEVNARGQHTPLETEVIC 558

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTK 353
            +       +            +         +D                   +F+ +  
Sbjct: 559 KDGSRLPVLVGSVIF------QERPRQTISFVLDNSARKELEQRKD-------AFISMAS 605

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR------TCIAASARLHTIQWNR 407
           ++    +      + LL               L   +         +     +  IQ  R
Sbjct: 606 HELKTPLTALKLQTALLHRQLAKQGIPASAPALSNMEGQINKVTRLVDELLDVSKIQAGR 665

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458
              L  T        +  E M Q       V   I +  +  +  +L  + 
Sbjct: 666 LEYLQETVNLDALLREITETMQQTSPSHRIVVRGIVETSLIGDRDRLGQVF 716


>gi|149927836|ref|ZP_01916087.1| PAS [Limnobacter sp. MED105]
 gi|149823458|gb|EDM82689.1| PAS [Limnobacter sp. MED105]
          Length = 1085

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 120/685 (17%), Positives = 237/685 (34%), Gaps = 56/685 (8%)

Query: 165 ALPIYSRNRE-----FSGFRGFGIV-------------HVNRVDNDPRALGKRLDKKFSH 206
           A P+ ++ RE     F G+  F I+                      +A  +  D++F  
Sbjct: 248 AAPMKAQWREQTISLFLGYLAFCILAVLMVKASMTYQAQQVLAKEKAKADQQFNDERFQL 307

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSP-------PPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
             E           +       S             + +    L        + L T   
Sbjct: 308 ATESAGIGVWEYNIQDKFIRWDSAMRKIYGVKDEQELVSYKEWLHYVVPEDVNKLGTVLL 367

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH----PSLSAYF 315
               ++++           +      +    T +N     F  +                
Sbjct: 368 EASKNQDTFQFNFNIRRASDGRIRHIQARAKTHRNTKGIPFRMIGVNVDVTVQRQFEDAL 427

Query: 316 DEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
            E E     + +   I   +    G     N +   +  Y   + +        +     
Sbjct: 428 REAEARFRSSFEWAAIGMAMLDFKGQFLQVNKALSEILGYSEEELLG--FSFDAITHPQD 485

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
              +  +   +L                I  +    + +        N     +      
Sbjct: 486 TMQHTHLVRDVLK---GRRHNYQLEKRYIHKDGH-VVWVHLSVSAVRNDKGRVIYFISQI 541

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
            +  + + N+  +      L ++ E     ++  + +      NR   K    P + +  
Sbjct: 542 QDISERKRNEATLIEREHFLRTLSECLPGLVSYWSTDLRCHFANRNHEKWSNIPADKMRG 601

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL---PFS 551
           +     L +      +HY+  +L  + ++                 + + +         
Sbjct: 602 QHMRKVLGEELFIHDHHYVLGVLKGEKQR---FERRKPLPSGGYADMLVHLIPDVLYGKV 658

Query: 552 SCYSLTMHDISEWKQEKNKLSHAK-------KIAEKESSHKSDFLARVSHEIRTPLTAII 604
             +     +I+++K ++ +L           + AE  S  K  FLA +SHEIRTP+ AI+
Sbjct: 659 EGFFSISTNITDFKAQQRELERINHVLTDRTQQAEAASKAKGAFLANMSHEIRTPMNAIM 718

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           G  +++++         R  +Y + I  + +++L+++ND+LDIS++E+ K+ L      L
Sbjct: 719 GLLQLLEDTDL----QARQRDYLSKIGSAADVLLNVLNDILDISRVEANKLELSHSRFLL 774

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG 723
           D+ +S+A  L    A EK I +  S   N P  +  D   + QI  N+LSNA+ FT  G 
Sbjct: 775 DQVLSKATDLFAYRAEEKAIQLYCSKDANCPVSLKGDRLRLAQILNNLLSNALKFTEKG- 833

Query: 724 QIIIST-THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
           +I +   +    +++   V+DTG+GM   +     +PF Q+ +S   R  G GLGL + K
Sbjct: 834 RIHLQVQSVADGKQLQFSVKDTGIGMNEEQCAALFQPFSQVDDSSSRRYGGAGLGLSICK 893

Query: 783 AMVDANMGKFYIFSTPAKGTLIEII 807
            +V+   G+ ++ STP  GT     
Sbjct: 894 NLVELMGGQIWVESTPGLGTTFHFT 918



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 53/426 (12%), Positives = 112/426 (26%), Gaps = 32/426 (7%)

Query: 71  ENTFVFDPIPRTVRFTWN------IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI 124
           E+            F W       +D  G   ++++ L + +G    +++G     ++  
Sbjct: 424 EDALREAEARFRSSFEWAAIGMAMLDFKGQFLQVNKALSEILGYSEEELLGFSFDAITHP 483

Query: 125 LHIDPNNH-IGDLLKRQNT-WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFG 182
                + H + D+LK +   +  +      +G    V + L+   + +       F    
Sbjct: 484 QDTMQHTHLVRDVLKGRRHNYQLEKRYIHKDGH--VVWVHLSVSAVRNDKGRVIYF--IS 539

Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYD-IFSQQSPPPHLRMKNKVS 241
            +          A     +     L E   G  S         F+ ++      +     
Sbjct: 540 QIQDISERKRNEATLIEREHFLRTLSECLPGLVSYWSTDLRCHFANRNHEKWSNIPADKM 599

Query: 242 SLTEYYAHKDDVLKTEKYP----LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297
                     + L    +     +L  E+     ++   +              L    +
Sbjct: 600 RGQHMRKVLGEELFIHDHHYVLGVLKGEKQRFERRKPLPSGGYADMLVHLIPDVLYGKVE 659

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSV 357
             F      N     A   E E +     D+             F AN S  + T   + 
Sbjct: 660 GFFSI--STNITDFKAQQRELERINHVLTDRTQQAEAASKAKGAFLANMSHEIRTPMNA- 716

Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
                  GL  LL+   L          +  +    +     +  I     N L ++   
Sbjct: 717 -----IMGLLQLLEDTDLQARQRDYLSKIGSAADVLLNVLNDILDISRVEANKLELSHSR 771

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRK-------MEIEVMQLCSILEATSDGIAIINR 470
           F       +         E+   ++   K       ++ + ++L  IL            
Sbjct: 772 FLLDQVLSKATDLFAYRAEEKAIQLYCSKDANCPVSLKGDRLRLAQILNNLLSNALKFTE 831

Query: 471 EGIILS 476
           +G I  
Sbjct: 832 KGRIHL 837


>gi|302036178|ref|YP_003796500.1| putative histidine kinase [Candidatus Nitrospira defluvii]
 gi|300604242|emb|CBK40574.1| putative Histidine kinase, containing PAS domain S-box [Candidatus
           Nitrospira defluvii]
          Length = 578

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 107/383 (27%), Positives = 180/383 (46%), Gaps = 12/383 (3%)

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
           + + ++     +   I+E   D +   +  G I   N     +F  P  + + KP T ++
Sbjct: 178 LAQDEVRESEARTRMIIETALDAVITTDATGTINGWNTQAELMFDVPRTEAIGKPLTTYV 237

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEK--ITLGSTKEEKLLSLRIIIKKLPFSS--CYSLT 557
               P+  +  +T    L     L +    LG T +     + I +  L       +++ 
Sbjct: 238 SAACPASGSTPITPYAGLVPGAILNRRSEMLGLTYQGTSFPVEIAMSCLAAGGTQQFTIF 297

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
           + DISE KQ++ +L  AK+ AE  S  KS FLA +SHEIRTP+  ++G +E++       
Sbjct: 298 VQDISERKQQEERLCRAKEAAEAASLAKSQFLANMSHEIRTPMNGVLGMTELLLTTPL-- 355

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
             N     YA+ +  SG  +L I+ND+LD SKIE+G++ L + P  L + ++E I L   
Sbjct: 356 --NDTQRRYAHTVHNSGTNLLHIINDILDFSKIEAGRLVLEYIPFGLRQLLTETIGLYHE 413

Query: 678 YANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN-- 734
            A +K + +  +   +IP +   D   ++QI  N++ NA+ FT +G  + +         
Sbjct: 414 QARKKGLALSVTMTPDIPDMAHGDPHRLRQILTNLVGNALKFTETG-TVAVFVRPDEGRP 472

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
             V + V DTG+G+     EK    F Q   S   +  GTGLGL + K +V    G+  +
Sbjct: 473 GRVRIEVTDTGIGIPLQAQEKIFDSFSQADGSMTRKYGGTGLGLAIVKQLVGMMGGQLGL 532

Query: 795 FSTPAKGTLIEIIFPLYDTSHPH 817
            STP +GT       +  ++ P 
Sbjct: 533 TSTPGQGTTFWFTISVDRSASPE 555


>gi|170741220|ref|YP_001769875.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
 gi|168195494|gb|ACA17441.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
          Length = 1596

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 129/740 (17%), Positives = 258/740 (34%), Gaps = 34/740 (4%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLC-DVSDILHIDPNNHIGDLLKRQNTWYGKT 147
            +   G ++  +      +G     M G     +V +           +   R+    G  
Sbjct: 602  VSPEGRIEICNARALALLGLPPELMAGKPTTHEVLEHQWRSGEFAGAEEEVRRLMRAGGI 661

Query: 148  TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
               P    + Y  +      +  R    +G                    +  + +   +
Sbjct: 662  VPEP----HTYTRVRPNGTVLEIRTMPMAGGGLVRTYTDITARRQAEEALRESESRHRLI 717

Query: 208  HEIKKGHSSVEKEKYDIFSQQSPPPHL-----RMKNKVSSLTEYYAHKDDV-LKTEKYPL 261
             E      ++ +   D       P          ++  +   E   H +D          
Sbjct: 718  AENVSDVITLRRAGGDGALLYVSPAIRTVLGYAPEDFAARPAESLLHPEDRDRVAAVTAA 777

Query: 262  LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH----RNHPSLSAYFDE 317
            + +   +          + +    +     +Q         L+         +  A   E
Sbjct: 778  IDAARPTATSVHRLRHRDGHWVFVETALTWMQGEGARGARILAAMRDVSRRVAAEAAVRE 837

Query: 318  GENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
             E L     +           G    Y +P+   +  Y+  D +         +  P   
Sbjct: 838  SEMLYRLLAETTSDVITRLDLGLAWQYVSPACRAVLGYEPEDLLRQRPSA---VVHPDDL 894

Query: 377  DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
                     L   +      +    T        +          ++    +       +
Sbjct: 895  PALQDLARRLAAGEIAGEHVTTTFRTRHGRGG-FVWTEAGLSLMRDEGGAPVSIVCSLRD 953

Query: 437  DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
                +  +  +E    +   + E  SD I   +R+ +    + A  ++ GY  E+I+   
Sbjct: 954  VTARKAAEAALEASEARYRFLSENGSDMIVQADRDSVRRYVSPACREILGYEPEEIVGTK 1013

Query: 497  FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--- 553
                +  +  + +       L+   R           ++   + +    + L  +     
Sbjct: 1014 PLDGVHPDDRAALAAT-LADLAAGTRDVATSRQRYRRRDGSYVWVEAKFRLLRDAEGRAE 1072

Query: 554  -YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
             Y  ++ D+SE +++   L  A+  AE+ S  K+DFLA +SHEIRTPL  I+G+++++ +
Sbjct: 1073 GYVASVRDVSERQRQAEALELARDAAEQASRAKTDFLASMSHEIRTPLNGILGYTDLLLD 1132

Query: 613  QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
                  G       A  I  +G  +L IVND+LD SKIE+G++ L  +P  LD  +   +
Sbjct: 1133 DPSLGGG---QRRQAERIQSAGAALLTIVNDILDFSKIEAGQIELDPQPFLLDALLDNTV 1189

Query: 673  SLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
            S+V+ +A +K I +        PR ++ D   ++QI LN+L+NA+ FT +G  + ++   
Sbjct: 1190 SVVRGFARKKAIAVAVRLDGAAPRTLVGDQDRLRQILLNLLNNAVKFTHAGS-VTLAVAC 1248

Query: 732  T----SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
                 +   +   V DTG+G+   + E+  + F Q+ NS +    GTGLGL ++K +V+ 
Sbjct: 1249 ESPPGATACLRFAVSDTGIGIPRDKHERLFQRFSQVDNSIRRDFGGTGLGLAISKNLVEL 1308

Query: 788  NMGKFYIFSTPAKGTLIEII 807
              G   + S  ++GT     
Sbjct: 1309 MGGTIGVESVVSEGTTFWFT 1328



 Score =  117 bits (294), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 53/533 (9%), Positives = 122/533 (22%), Gaps = 42/533 (7%)

Query: 83  VRFTWNIDAHGYLKE--ISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK-- 138
            +F   ++  G  +    +      +G     ++G  L          P   +  +    
Sbjct: 343 AQFICRLETDGSFRLEACNRAAAARLGAAPEALVGRPL------GGALPAGRVARIEADL 396

Query: 139 RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
           R+    G        G       +    P+          R    +          A  +
Sbjct: 397 RRCLAAGNPIRLQESGDGAGRVFEEVLTPLRDEAGRLD--RVLASIREITHLKRAEAETR 454

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS-------PPPHLRMKNKVSSLTEYYAHKD 251
              ++     EI          + D  +            P        ++L   +    
Sbjct: 455 EAVRRLLMAEEIAHVGHWRIDLRDDSMTWSREVFRIHGLEPGSVAPTLAAALGFCHPDDR 514

Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
             +       + S++ +          + +                         +  + 
Sbjct: 515 PAVAASIEAQIASKQPATDALRIVR-PDGSIRHVVTRALCEFGPDGAVAALFGTLSDVTE 573

Query: 312 SAYFDEGENLTPE----TVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
               +            T++       V S  G +   N   L L               
Sbjct: 574 LRRVEREAAEAASLLATTLESMDQGLIVVSPEGRIEICNARALALLGLPPELMAGKPTTH 633

Query: 367 STLLDAPKLSD-NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
             L    +  +   A + V         +        ++ N            E      
Sbjct: 634 EVLEHQWRSGEFAGAEEEVRRLMRAGGIVPEPHTYTRVRPNG--------TVLEIRTMPM 685

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR--EGIILSTNRAVSK 483
                     +    R  +  +     +   I E  SD I +     +G +L  + A+  
Sbjct: 686 AGGGLVRTYTDITARRQAEEALRESESRHRLIAENVSDVITLRRAGGDGALLYVSPAIRT 745

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           + GY  ED   +P    L       +      I +     T         ++   + +  
Sbjct: 746 VLGYAPEDFAARPAESLLHPEDRDRVAAVTAAIDAARPTATSVH--RLRHRDGHWVFVET 803

Query: 544 IIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
            +  +             M D+S     +  +  ++ +    +   SD + R+
Sbjct: 804 ALTWMQGEGARGARILAAMRDVSRRVAAEAAVRESEMLYRLLAETTSDVITRL 856



 Score =  107 bits (268), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 41/418 (9%), Positives = 100/418 (23%), Gaps = 21/418 (5%)

Query: 184 VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFS--QQSPPPHLRMKNKVS 241
           + + R     RA        F    E +          + + +  + +          + 
Sbjct: 317 LRLGRTLAQQRASETLFRAMFEAASEAQFICRLETDGSFRLEACNRAAAARLGAAPEALV 376

Query: 242 SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301
                 A     +   +  L     +  P +    + +      ++    L++ +     
Sbjct: 377 GRPLGGALPAGRVARIEADLRRCLAAGNPIRLQ-ESGDGAGRVFEEVLTPLRDEAGRLDR 435

Query: 302 YLSHRNHP----SLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKS 356
            L+            A   E         +   +  + +    +    +     +   + 
Sbjct: 436 VLASIREITHLKRAEAETREAVRRLLMAEEIAHVGHWRIDLRDDSMTWSREVFRIHGLEP 495

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
                                  A     +        A       I     +   +   
Sbjct: 496 GSVAPTLAAALGFCHPDDRPAVAASIEAQIASKQPATDAL-----RIVRPDGSIRHVVTR 550

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476
              +           G   +  + R  +R+       L + LE+   G+ +++ EG I  
Sbjct: 551 ALCEFGPDGAVAALFGTLSDVTELRRVEREAAEAASLLATTLESMDQGLIVVSPEGRIEI 610

Query: 477 TNRAVSKLFGYPVEDILRKP-----FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
            N     L G P E +  KP               +     +  ++              
Sbjct: 611 CNARALALLGLPPELMAGKPTTHEVLEHQWRSGEFAGAEEEVRRLMRAGGIVPEPHTYTR 670

Query: 532 STKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
                 +L +R +            T  DI+  +Q +  L  ++      + + SD +
Sbjct: 671 VRPNGTVLEIRTMP---MAGGGLVRTYTDITARRQAEEALRESESRHRLIAENVSDVI 725



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/378 (6%), Positives = 77/378 (20%), Gaps = 23/378 (6%)

Query: 88   NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGK 146
                 G L  +S  +   +G             +      D        +   + T    
Sbjct: 729  RAGGDGALLYVSPAIRTVLGYAPEDFAARPAESLLHPEDRDRVAAVTAAIDAARPTATSV 788

Query: 147  TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
              L   +G   +V ++ A   +        G R    +          A  +  +  +  
Sbjct: 789  HRLRHRDGH--WVFVETALTWMQGEGAR--GARILAAMRDVSRRVAAEAAVRESEMLYRL 844

Query: 207  LHEIKKGHSSVEKEKYDIFSQQSP-------PPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
            L E      +                      P   ++ + S++              + 
Sbjct: 845  LAETTSDVITRLDLGLAWQYVSPACRAVLGYEPEDLLRQRPSAVVHPDDLPALQDLARRL 904

Query: 260  PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL----SHRNHPSLSAYF 315
                     +                +     +++        +          +  A  
Sbjct: 905  AAGEIAGEHVTTTFRTRHGRGGFVWTEAGLSLMRDEGGAPVSIVCSLRDVTARKAAEAAL 964

Query: 316  DEGENLTPETVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
            +  E       +            ++  Y +P+   +  Y+  + +              
Sbjct: 965  EASEARYRFLSENGSDMIVQADRDSVRRYVSPACREILGYEPEEIVGTKP------LDGV 1018

Query: 375  LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
              D+ A     L          +      +    + + +        +            
Sbjct: 1019 HPDDRAALAATLADLAAGTRDVATSRQRYRRRDGSYVWVEAKFRLLRDAEGRAEGYVASV 1078

Query: 435  PEDVDTRINKRKMEIEVM 452
             +  + +     +E+   
Sbjct: 1079 RDVSERQRQAEALELARD 1096



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 45/516 (8%), Positives = 112/516 (21%), Gaps = 34/516 (6%)

Query: 82  TVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN 141
            +R    + A G +   + E  +  G+ +                +  ++ +  L     
Sbjct: 118 PIRDIAVLGADGSVLVGTREHAEPAGDRS-------------YFTVHRDDPLAGLFIS-- 162

Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
                       G +  + +          +  F G                    +   
Sbjct: 163 -----PAFRDRAGDDRAIVVSRRLAL---PDGRFGGV--IAATLDVDYFRRFYRTMEVGP 212

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
                L         V   + D            +     +     A     +       
Sbjct: 213 GGVVALLGADGRPLVVHPWRDDGGDLPRLDLAAALPPGAEAGLVTEAADAQGVLRLVAYR 272

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
                  +          L  + ++    T    +     +L         A     E L
Sbjct: 273 RVEALPLVAVVGLAREDALGSWHRQVLVLTGIALAALGLTWLIGLRLGRTLAQQRASETL 332

Query: 322 TPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
                +      F+               L          +      L+  P      A 
Sbjct: 333 FRAMFEAASEAQFICRLE-----TDGSFRLEACNRAAAARLGAAPEALVGRPLGGALPAG 387

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
           +   +    R C+AA   +   +           +     ++            E    +
Sbjct: 388 RVARIEADLRRCLAAGNPIRLQESGDGAGRVFEEVLTPLRDEAGRLDRVLASIREITHLK 447

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF- 500
             + +    V +L    E    G   I+     ++ +R V ++ G     +         
Sbjct: 448 RAEAETREAVRRLLMAEEIAHVGHWRIDLRDDSMTWSREVFRIHGLEPGSVAPTLAAALG 507

Query: 501 -LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL--SLRIIIKKLPFSSCYSLT 557
               +    +   +   ++     T     +      + +              +    T
Sbjct: 508 FCHPDDRPAVAASIEAQIASKQPATDALRIVRPDGSIRHVVTRALCEFGPDGAVAALFGT 567

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
           + D++E ++ + + + A  +           L  VS
Sbjct: 568 LSDVTELRRVEREAAEAASLLATTLESMDQGLIVVS 603



 Score = 67.4 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 37/385 (9%), Positives = 84/385 (21%), Gaps = 27/385 (7%)

Query: 88   NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK- 146
             +D     + +S      +G     ++  R   V     +     +   L          
Sbjct: 855  RLDLGLAWQYVSPACRAVLGYEPEDLLRQRPSAVVHPDDLPALQDLARRLAAGEIAGEHV 914

Query: 147  -TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
             TT     G   +V  +     +               +          A  +  + ++ 
Sbjct: 915  TTTFRTRHGRGGFVWTEAGLSLMRDEGGAPV--SIVCSLRDVTARKAAEAALEASEARYR 972

Query: 206  HLHEIKKGHSSVEKEKYDIFSQQSP---PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
             L E                              +  V +      H DD          
Sbjct: 973  FLSENGSDMIVQADRDSVRRYVSPACREILGYEPEEIVGTKPLDGVHPDDRAALAATLAD 1032

Query: 263  TSEESS--LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
             +  +      ++ +   + +    +  F  L++    +  Y++     S      E   
Sbjct: 1033 LAAGTRDVATSRQRYRRRDGSYVWVEAKFRLLRDAEGRAEGYVASVRDVSERQRQAEALE 1092

Query: 321  LTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
            L  +  ++                      ++         I G    LLD P L     
Sbjct: 1093 LARDAAEQASRA-----------KTDFLASMSHEIRTPLNGILGYTDLLLDDPSLGGGQR 1141

Query: 381  IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN-------GI 433
             +   +  +    +     +          + +   PF         +           I
Sbjct: 1142 RQAERIQSAGAALLTIVNDILDFSKIEAGQIELDPQPFLLDALLDNTVSVVRGFARKKAI 1201

Query: 434  EPEDVDTRINKRKMEIEVMQLCSIL 458
                       R +  +  +L  IL
Sbjct: 1202 AVAVRLDGAAPRTLVGDQDRLRQIL 1226



 Score = 57.7 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 37/402 (9%), Positives = 89/402 (22%), Gaps = 38/402 (9%)

Query: 88   NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK--RQNTWYG 145
              D     + +S    + +G    +++G +  D                L    ++    
Sbjct: 984  QADRDSVRRYVSPACREILGYEPEEIVGTKPLDGVHPDDRAALAATLADLAAGTRDVATS 1043

Query: 146  KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
            +      +G+  YV ++     +        G+     V             +       
Sbjct: 1044 RQRYRRRDGS--YVWVEAKFRLLRDAEGRAEGY--VASVRDVSERQRQAEALELARDAAE 1099

Query: 206  HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT-- 263
                 K    +    +           +  +     SL      + + +++    LLT  
Sbjct: 1100 QASRAKTDFLASMSHEIRT-PLNGILGYTDLLLDDPSLGGGQRRQAERIQSAGAALLTIV 1158

Query: 264  ------SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
                  S+  +   + D     L+               K++       +  +      +
Sbjct: 1159 NDILDFSKIEAGQIELDPQPFLLDALLDNTVSVVRGFARKKAIAVAVRLDGAAPRTLVGD 1218

Query: 318  GENLTPETVDKCPIPFFVYSHGNLFYAN-------PSFLLLTKYKSVDDIEIAGGLSTLL 370
             + L    ++           G++  A         +  L                  L 
Sbjct: 1219 QDRLRQILLNLLNNAVKFTHAGSVTLAVACESPPGATACLRFAVSDTGIGIPRDKHERLF 1278

Query: 371  DAPKLSDNNAIKPV-----------MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
                  DN+  +              L       I   + +         +   T     
Sbjct: 1279 QRFSQVDNSIRRDFGGTGLGLAISKNLVELMGGTIGVESVVSE-----GTTFWFTVTLPV 1333

Query: 420  KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
                     P      +     +    +EI      ++LEA 
Sbjct: 1334 GGAVAAPAAPGRAALAQLPARILLVEDLEINQDIARAVLEAA 1375


>gi|149177515|ref|ZP_01856118.1| multi-sensor hybrid histidine kinase [Planctomyces maris DSM 8797]
 gi|148843665|gb|EDL58025.1| multi-sensor hybrid histidine kinase [Planctomyces maris DSM 8797]
          Length = 1129

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 117/665 (17%), Positives = 243/665 (36%), Gaps = 63/665 (9%)

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
              ++       E       +   P   +      L ++ +  +  L   K  L     +
Sbjct: 46  RRAEEIFGWSRDEAIGSAVAELIIPPQYLAQHQDGLRQFKSTGEGRLINNKMELTALRRN 105

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
                 +     +  + +  +   +++ S              L A   +  + +  T D
Sbjct: 106 GHEFPVEMIITQIEWHGQVIFNAFVRDVSDRKEAEQLIA-REKLEAALLQQASFSSSTSD 164

Query: 328 KCPIP--FFVYSHGNLFYA--NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
                    V + G++       ++L       +    I    +         ++     
Sbjct: 165 ALEDALRICVANLGDISGWPIGHAYLRHQGGNRLVSSRIWHLANRDHFLDLRDESEKQSF 224

Query: 384 VM------LYRSDRTCIAAS---------------------ARLHTIQWNRENSLAMTFI 416
           V          S    +  +                     A    ++ + +    + F 
Sbjct: 225 VRGEDLPGYVWSRGEPVWVTDFENEEIITQKRDFAALGVRSAFAFPVKLDGDVIAVVEFF 284

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476
                +     +  +      +   I + + + E  +L +I++++ D I     +G I S
Sbjct: 285 NTRLISPDLNLLALSRGVSNLIRHVIERVQWQEERTRLAAIVDSSGDAIIGKAPDGTITS 344

Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
            N     ++G+  E+++ +  ++ L        +  L  + +    +  +  T    K+ 
Sbjct: 345 WNNGAEVIYGWLEEEVIGETVSILLPPGMAREESEILEAMKTGR--RLDQFQTRRMRKDG 402

Query: 537 KLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
            ++ + I +  +       +       DI+  ++ + +LS AK  AE+ +  + +FLA V
Sbjct: 403 TIIDVAITVSPIRGMDQQVVGSSSIERDITARRRREEELSKAKDEAEQATRAQGEFLANV 462

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHE+RTP+ AI+G  E+   +   PL      +Y      S + +L +VND+LD S++E+
Sbjct: 463 SHELRTPMNAILGMLELTLQENLTPLK----RDYLQTAKDSADSLLLLVNDILDFSRLEA 518

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNI 711
           G   L   P SL   + EA+  + L A EK + +       +P ++L D   ++QI  N+
Sbjct: 519 GHFELEPVPFSLRVMIDEAVKTLSLRACEKGLELICRIDKRVPSQVLGDPVRLRQILTNL 578

Query: 712 LSNAIHFTPSGGQIIISTTH-TSNEEV-------------ILRVRDTGVGMTNYELEKAM 757
             NAI FT  G ++++         E+                V DTG+G+   + ++  
Sbjct: 579 AGNAIKFTEQG-EVVVDVKLIEPAGEIPLPRLQPGEKALLEFSVSDTGIGIAVEDQKRIF 637

Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE--IIFPLYDTSH 815
            PF Q   S      GTGLGL +   ++    G+ Y+ S P +G+     +I P+ +   
Sbjct: 638 APFAQADASTTRHYSGTGLGLAICHELIGLMDGEMYLTSEPGEGSCFSFQVILPVAE--- 694

Query: 816 PHDCI 820
           P + +
Sbjct: 695 PEESV 699



 Score = 94.3 bits (233), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 17/144 (11%), Positives = 53/144 (36%), Gaps = 5/144 (3%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF-LEQN 504
            +     +L +I+++  D +  ++ +G ++  NR   ++FG+  ++ +        +   
Sbjct: 13  ALWASDGRLQTIVDSAMDAVITMDIDGDVVDWNRRAEEIFGWSRDEAIGSAVAELIIPPQ 72

Query: 505 TPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSCYS--LTMHD 560
             +     L +  S    + +          +      + +II ++ +         + D
Sbjct: 73  YLAQHQDGLRQFKSTGEGRLINNKMELTALRRNGHEFPVEMIITQIEWHGQVIFNAFVRD 132

Query: 561 ISEWKQEKNKLSHAKKIAEKESSH 584
           +S+ K+ +  ++  K  A      
Sbjct: 133 VSDRKEAEQLIAREKLEAALLQQA 156



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 41/446 (9%), Positives = 105/446 (23%), Gaps = 74/446 (16%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL-----HIDPNNHIGDLLKRQNTW 143
           +D  G + + +    +  G    + IG  + ++         H D         + +   
Sbjct: 35  MDIDGDVVDWNRRAEEIFGWSRDEAIGSAVAELIIPPQYLAQHQDGLRQFKSTGEGRLIN 94

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF-GIVHVNRVDNDPRALGKR--- 199
                       +   P+++    I     E+ G   F   V       +   L  R   
Sbjct: 95  NKMELTALRRNGHE-FPVEMIITQI-----EWHGQVIFNAFVRDVSDRKEAEQLIAREKL 148

Query: 200 --------------LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE 245
                          D     L         +          +    +  + +++  L  
Sbjct: 149 EAALLQQASFSSSTSDALEDALRICVANLGDISGWPIGHAYLRHQGGNRLVSSRIWHLAN 208

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHT------------------INLNQYTKKQ 287
                D   ++EK   +  E+                               L   +   
Sbjct: 209 RDHFLDLRDESEKQSFVRGEDLPGYVWSRGEPVWVTDFENEEIITQKRDFAALGVRSAFA 268

Query: 288 YFGTLQNNSKESFEYLSHR-------------------NHPSLSAYFDEGENLTPETVDK 328
           +   L  +     E+ + R                    H      + E        VD 
Sbjct: 269 FPVKLDGDVIAVVEFFNTRLISPDLNLLALSRGVSNLIRHVIERVQWQEERTRLAAIVDS 328

Query: 329 CPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
                      G +   N    ++  +   + I       ++L  P ++       ++  
Sbjct: 329 SGDAIIGKAPDGTITSWNNGAEVIYGWLEEEVIGE---TVSILLPPGMAREE--SEILEA 383

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
                 +    +   ++ +    + +            + +  + IE +    R  + ++
Sbjct: 384 MKTGRRLD-QFQTRRMRKDG-TIIDVAITVSPIRGMDQQVVGSSSIERDITARRRREEEL 441

Query: 448 EIEVMQLCSILEATSDGIAIINREGI 473
                +      A  + +A ++ E  
Sbjct: 442 SKAKDEAEQATRAQGEFLANVSHELR 467



 Score = 57.7 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 24/245 (9%), Positives = 60/245 (24%), Gaps = 10/245 (4%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTW-YGKTTL 149
             G +   +       G    ++IG  +  +         + I + +K        +T  
Sbjct: 338 PDGTITSWNNGAEVIYGWLEEEVIGETVSILLPPGMAREESEILEAMKTGRRLDQFQTRR 397

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
              +GT + V I ++  PI   +++  G     I               +   +      
Sbjct: 398 MRKDGTIIDVAITVS--PIRGMDQQVVGSS--SIERDITARRRREEELSKAKDEAEQATR 453

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
            +    +    +                 +  +  +    +      +   LL ++    
Sbjct: 454 AQGEFLANVSHELRTPMNAILGMLELTLQENLTPLKRDYLQTAKDSADSLLLLVNDILDF 513

Query: 270 PEQEDFHTINLN-----QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
              E  H          +    +   TL   + E    L  R    + +          +
Sbjct: 514 SRLEAGHFELEPVPFSLRVMIDEAVKTLSLRACEKGLELICRIDKRVPSQVLGDPVRLRQ 573

Query: 325 TVDKC 329
            +   
Sbjct: 574 ILTNL 578


>gi|332702456|ref|ZP_08422544.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332552605|gb|EGJ49649.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 1066

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 104/598 (17%), Positives = 216/598 (36%), Gaps = 41/598 (6%)

Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302
           L      +D             ++ +    E      L     +      ++        
Sbjct: 341 LQFPSFEEDSGKILAAAVRGAFDKKAEQSAEVVFRTPLGLKLCQCRLIPERDADGRVTSV 400

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIE 361
           L      + +   +E         ++  +    +   G    AN  F  +T Y   + I 
Sbjct: 401 LGILRDITQAREQEE---RYRVVFEQAAVGLNRIDLDGRFTEANGKFCEITGYDRHELIG 457

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                 +        D +    +            +A    ++ +   ++ +      + 
Sbjct: 458 R-----SFTHVVHADDISENIDLFRSLMAGKIDEFAAEKQVVRKDG-TTVWVNVTISLER 511

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
           N     +   G+  +    +  ++++     +  ++ E + D I  I ++      N A+
Sbjct: 512 NALGRLVGTIGVMEDITARKRTEQELYRREQEFRALSENSPDIIVRIGKDLKRSYVNPAI 571

Query: 482 SKLFGYPVEDILRKPFTVFLEQ---NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
            +L G   +  L                      L ++L+    ++ E          + 
Sbjct: 572 GRLHGMSPDHYLGMHVREPARPDREEFRRAYEELLKQVLASGREESHEYSLTTING-LRH 630

Query: 539 LSLRIII--KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
              R+                  D++ +K+ + +L  A+  AE  +  KS+FLA +SHEI
Sbjct: 631 FHCRLTPEFAPSGEVVSVLSISRDVTAYKELEQELRRARNEAEVANHAKSEFLAAMSHEI 690

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTP+  IIG +++          + +   Y  +I  S + +L+++ND+LD+SK+ESG+M 
Sbjct: 691 RTPMNGIIGMTDLALMGGC----DSKASSYLGFIKESAHSLLELINDILDLSKVESGRME 746

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNA 715
           L  +   L +++   +  ++L A  K + +       +P + + D   ++Q+  N++ NA
Sbjct: 747 LEKKAFDLRKSLESLLQPLRLSAQRKGVELSWYVGPEVPELLMGDDLRLRQVFTNLVGNA 806

Query: 716 IHFTPSGGQIIISTTHTS-------------NEEVIL--RVRDTGVGMTNYELEKAMKPF 760
           + FT  G  I I+                   EE+ L   V DTG+G+   +L+   + F
Sbjct: 807 LKFTSWGS-ITIAIGVAEAADSRKTPEPGASQEEISLQATVSDTGIGIPPDKLQHVFESF 865

Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL--IEIIFPLYDTSHP 816
             +         GTGLGL + K +V+   G  +  S P +G++    +       + P
Sbjct: 866 ATL--GHDKEYGGTGLGLAITKKLVEIMGGTIWAESQPGQGSVFGFTVRLARASEAEP 921



 Score = 94.3 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 33/296 (11%), Positives = 72/296 (24%), Gaps = 22/296 (7%)

Query: 53  NFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTW--------NIDAHGYLKEISEELPK 104
              D +    S    L               R  +         ID  G   E + +  +
Sbjct: 389 PERDADGRVTSVLGILRDITQAREQEERY--RVVFEQAAVGLNRIDLDGRFTEANGKFCE 446

Query: 105 TIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ--NTWYGKTTLWPIEGTNLYVPID 162
             G    ++IG     V     I  N  +   L     + +  +  +   +GT ++V + 
Sbjct: 447 ITGYDRHELIGRSFTHVVHADDISENIDLFRSLMAGKIDEFAAEKQVVRKDGTTVWVNVT 506

Query: 163 LAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKY 222
           ++     +      G    G++              R +++F  L E          +  
Sbjct: 507 ISLE--RNALGRLVGT--IGVMEDITARKRTEQELYRREQEFRALSENSPDIIVRIGKDL 562

Query: 223 DIFSQQSPPP--HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINL 280
                       H    +    +      + D  +  +      ++     +E+ H  +L
Sbjct: 563 KRSYVNPAIGRLHGMSPDHYLGMHVREPARPDREEFRRAYEELLKQVLASGREESHEYSL 622

Query: 281 ----NQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP 332
                              S E    LS     +     ++         +     
Sbjct: 623 TTINGLRHFHCRLTPEFAPSGEVVSVLSISRDVTAYKELEQELRRARNEAEVANHA 678



 Score = 71.6 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 29/394 (7%), Positives = 75/394 (19%), Gaps = 24/394 (6%)

Query: 69  DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGM--RLCDVSDILH 126
            S   +               D       I+  +    G  A   IG   +     +   
Sbjct: 293 QSGTGYRLLVENSP-DIICRFDRKLLCTYINPAVEAMTGAPADTFIGDYLQFPSFEEDSG 351

Query: 127 IDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHV 186
                 +     ++     +       G  L        +P    +   +   G  I+  
Sbjct: 352 KILAAAVRGAFDKKAEQSAEVVFRTPLGLKL---CQCRLIPERDADGRVTSVLG--ILRD 406

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY 246
                +     +           +      ++    +   +            +     +
Sbjct: 407 ITQAREQEERYRV----VFEQAAVGLNRIDLDGRFTEANGKFCEITGYDRHELIGRSFTH 462

Query: 247 YAHKDDVLKTEK--YPLLTSEESSLPEQEDFHTINLNQYTKKQYFG----TLQNNSKESF 300
             H DD+ +       L+  +      ++     +                L        
Sbjct: 463 VVHADDISENIDLFRSLMAGKIDEFAAEKQVVRKDGTTVWVNVTISLERNALGRLVGTIG 522

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDD 359
                             E       +  P     +       Y NP+   L      D 
Sbjct: 523 VMEDITARKRTEQELYRREQEFRALSENSPDIIVRIGKDLKRSYVNPAIGRLHGMSP-DH 581

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
                         +       + +    +     +    L TI                
Sbjct: 582 YLGMHVREPARPDREEFRRAYEELLKQVLASGREESHEYSLTTI----NGLRHFHCRLTP 637

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
           +     E +    I  +    +  ++++     +
Sbjct: 638 EFAPSGEVVSVLSISRDVTAYKELEQELRRARNE 671



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/129 (14%), Positives = 48/129 (37%), Gaps = 6/129 (4%)

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF-LEQNTPSVMNHY 512
              ++E + D I   +R+ +    N AV  + G P +  +         E+++  ++   
Sbjct: 298 YRLLVENSPDIICRFDRKLLCTYINPAVEAMTGAPADTFIGDYLQFPSFEEDSGKILAAA 357

Query: 513 LTEILSLDLRQTLEKITLGSTKEE-KLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKN 569
           +         Q+     +  T    KL   R+I ++            + DI++ ++++ 
Sbjct: 358 VRGAFDKKAEQS--AEVVFRTPLGLKLCQCRLIPERDADGRVTSVLGILRDITQAREQEE 415

Query: 570 KLSHAKKIA 578
           +     + A
Sbjct: 416 RYRVVFEQA 424


>gi|332705649|ref|ZP_08425725.1| PAS domain S-box protein [Lyngbya majuscula 3L]
 gi|332355441|gb|EGJ34905.1| PAS domain S-box protein [Lyngbya majuscula 3L]
          Length = 953

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 129/791 (16%), Positives = 245/791 (30%), Gaps = 92/791 (11%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIG---MRLCDVSDILHIDPNNHIGDLLKRQNT 142
            W+ +        S    + +G      IG    +         +D      +    Q T
Sbjct: 174 IWDWNPKTNETFFSSRCKEMLGYDENYDIGNYNHQWWTHIHPDDVDQVIKAMEDHLAQKT 233

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
            Y             Y  I      ++    +    R  G +             +  +K
Sbjct: 234 SYYVQEYRLHCNDGSYKWILDQGQALWDEAGDPV--RVVGSITDISDRKQTEEALQENEK 291

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQS----------------PPPHLRMKNKVSSLTEY 246
                 E  +   S  ++     S  S                P   L            
Sbjct: 292 ALKSNQERLEAIMSSLQDVVWSVSLPSGILRYVNIAFEQVYGRPTFELFSDQDNLWRQFI 351

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
                D ++     +  +   S   +      N            +  ++  S       
Sbjct: 352 VPVDRDRVEKAWRAVQENRRESWDLEYRIQLSNGEIRWLNDRAHVVIRDNGTSVHLHGIT 411

Query: 307 NHPSLSAYFD----------------------EGENLTPETVDKCPIPFFVYSH-GNLFY 343
              +     +                      E E       +  P    +    G +  
Sbjct: 412 TDITKRKQQEAELQQLNRELEIRVQQRTAALLESEQRFRSLFESAPDFIHILDTQGMIEQ 471

Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403
            NP+ +  + Y   + I     L         +      PV+L +               
Sbjct: 472 VNPAVIQQSGYSESELIGNR--LEEFFTPRYQNICQQEFPVLLEQGTHRQ------EIEF 523

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK-------MEIEVMQLCS 456
                  L          +          ++ +    +  + +       ++    +  S
Sbjct: 524 VCKNGTVLTTDSSCSVVHDTQGNISYILVLQRDISSRKRFEEERTQLIASLQESERRWRS 583

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP-FTVFLEQNTPSVMNHYLTE 515
           +LE     +  ++R+G +   N    +L  Y   ++L K  F  FL  +    +  Y  +
Sbjct: 584 LLENVRLVVVGLDRQGKVEYVNPFFLELTKYTAAEVLGKDWFENFLPNSQQQSVQQYFQD 643

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSH 573
           IL  D +   +   L  +K+EK+++    + +              DI+E    +     
Sbjct: 644 ILDPDFQSHYQHSILTKSKQEKIIAWNNTLLQNVQGEAIGTMSIGEDITERYAIE----- 698

Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
                      K +F + VSHE+RTPLT+I G    + +       + R          S
Sbjct: 699 ---------RMKDEFTSVVSHELRTPLTSIHGAL-NLLSTGLIQPQSERGQRVIGIAADS 748

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-- 691
              ++ +VND+L++ ++ESGK+ L  +PV+  E + +A+  VQ+ AN   I +  S    
Sbjct: 749 AERLVRLVNDILELERLESGKIRLSKQPVNAAELMVKAVDQVQVMANRAGIKLEVSPQAI 808

Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-------------VI 738
            +     AD   + Q+  N+LSN I F+  G  + ++      EE             ++
Sbjct: 809 ESEIEFEADSDRIIQVITNLLSNGIKFSDRGSSLWLTVELQHPEELETTSPLDPNSATIL 868

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
             V+D G G+   +LE     F Q+  S   +  GTGLGL + + +V+ + GK ++ ST 
Sbjct: 869 FTVKDQGRGIPADKLESIFGRFQQVDASDARKKGGTGLGLAICRNIVEQHGGKIWVESTV 928

Query: 799 AKGTLIEIIFP 809
            +G+      P
Sbjct: 929 GEGSSFYFTLP 939



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 18/177 (10%), Positives = 56/177 (31%), Gaps = 11/177 (6%)

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
             +      ++ +  +  + ++ +     +    L+  + GI   N +      +    +
Sbjct: 133 AGQEPLNQELKSQIEECILVEQSLRKREQRWQLALQGANQGIWDWNPKTNETFFSSRCKE 192

Query: 484 LFGYPVEDILR---KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
           + GY     +      +   +  +    +   + + L+        +       +     
Sbjct: 193 MLGYDENYDIGNYNHQWWTHIHPDDVDQVIKAMEDHLAQ-KTSYYVQEYRLHCNDGSYKW 251

Query: 541 LRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
           +    + L   +        ++ DIS+ KQ +  L   +K   K +  + +  A +S
Sbjct: 252 ILDQGQALWDEAGDPVRVVGSITDISDRKQTEEALQENEKAL-KSNQERLE--AIMS 305



 Score = 46.6 bits (109), Expect = 0.016,   Method: Composition-based stats.
 Identities = 32/274 (11%), Positives = 77/274 (28%), Gaps = 19/274 (6%)

Query: 68  LDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI 127
           L+SE  F          F   +D  G +++++  + +  G    ++IG RL +     + 
Sbjct: 443 LESEQRFRSLFESAP-DFIHILDTQGMIEQVNPAVIQQSGYSESELIGNRLEEFFTPRYQ 501

Query: 128 DPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIV--- 184
           +       +L  Q T   +       GT   +  D +   ++      S      ++   
Sbjct: 502 NICQQEFPVLLEQGTHRQEIEFVCKNGT--VLTTDSSCSVVHDTQGNIS---YILVLQRD 556

Query: 185 -----HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR--MK 237
                          A  +  ++++  L E  +        +  +         L     
Sbjct: 557 ISSRKRFEEERTQLIASLQESERRWRSLLENVRLVVVGLDRQGKVEYVNPFFLELTKYTA 616

Query: 238 NKVSS---LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294
            +V        +  +       + +  +   +     Q    T +  +         LQN
Sbjct: 617 AEVLGKDWFENFLPNSQQQSVQQYFQDILDPDFQSHYQHSILTKSKQEKIIAWNNTLLQN 676

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
              E+   +S     +     +  ++     V  
Sbjct: 677 VQGEAIGTMSIGEDITERYAIERMKDEFTSVVSH 710


>gi|114570768|ref|YP_757448.1| PAS/PAC sensor hybrid histidine kinase [Maricaulis maris MCS10]
 gi|114341230|gb|ABI66510.1| PAS/PAC sensor hybrid histidine kinase [Maricaulis maris MCS10]
          Length = 1070

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 127/749 (16%), Positives = 253/749 (33%), Gaps = 45/749 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID--PNNHIGDLLKRQNTWYGK 146
            D  G +  ++    +  G    ++ G          + D      + + ++       +
Sbjct: 180 TDRDGVIDWVNPAFERLSGYKLAEVRGRLPGTFLLCPNSDSGAVKALAEAVRDGRECQVE 239

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                  G    + I+L   PI   +   +GF    +        + R    R  ++   
Sbjct: 240 LVNRAKNGAEYTILIEL--TPIRDEDGCCTGFM--SVQTDITAQIETRERLSRALRESQS 295

Query: 207 LHEIKKGH--SSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
           L ++ + H   SV      +               +  +    +               +
Sbjct: 296 LMDVIRQHTVFSVTDPAGVVTDVNDAFCQQSGYTKEEILGKTHQTLLSSGMHPDAFWVEM 355

Query: 262 LTSEESSLPEQEDF--HTINLNQYTKKQYFGTLQNNSKESFEYL----SHRNHPSLSAYF 315
            ++ ++  P + +      +   +          N   E   Y+       N   + A  
Sbjct: 356 RSTIKAGRPWRGEICNRNKSGELFWVDSIVAPQMNAGGEIERYIFIRFDITNRKHIEAGL 415

Query: 316 DEGENLTPETVDKCP-------IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
              +     ++++         I  +      +                D +        
Sbjct: 416 AASQRQLEASLERLSAVTELGGIGSWEVDLDTMTPIWDDITRKIHEVDGDYVPNMDTAIN 475

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
                     +      +     T       L  I                  +  P  +
Sbjct: 476 FYAPESRGPISDA----VAHCVETGEPWDLELPLITATNRRIWVRAVGRRVLRDGKP--I 529

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA-IINREGIILSTNRAVSKLFGY 487
              G   +  + R  + ++ +   +L   LE++  G+  I    G     +    +LFG 
Sbjct: 530 RLVGSFQDVSERREREEELRLISTRLEVALESSGIGVWDICPPTGEY-HWDDGSRRLFGI 588

Query: 488 PVEDILRKPFTVF--LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR--- 542
             +     P   F  +  +    ++  L    +      + +       +     +R   
Sbjct: 589 DRDSANPAPDDWFNGIHPDDREAVSAGLANAYATKTH--VRREYRYRRSDGGYRHIRSFG 646

Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
           +  ++L      +    D+S   ++   L  A++ AE  S  KS FLA +SHEIRTPL  
Sbjct: 647 VYRERLDAPPIITGVHLDVSADIEQAAALELARERAESASYAKSQFLANMSHEIRTPLNG 706

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           ++G ++V+           +   +   I  SG  + D+++D+LDISKIESG + L     
Sbjct: 707 VLGMTQVLHMTEL----TEQQSRHVETIRSSGQALADLIDDILDISKIESGMIELEQRAF 762

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPS 721
            + E V+    + +L A EK++ +  S A ++ +++  D + ++QI +NI+ NA+ FT S
Sbjct: 763 EMPELVAMVSDITRLRAQEKQLALDMSLAPDVAKVVVGDEKRLRQILINIVGNAVKFTDS 822

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           G ++ I     + + V  R+ DTG G+    L      F Q  NS   +  GTGLGL + 
Sbjct: 823 G-RVSIDIRAGAEDVVEFRISDTGPGIEPDHLASIFDRFAQADNSITRQYGGTGLGLAIC 881

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             +V    G+  + S P +G+      PL
Sbjct: 882 HELVTLMGGEIGVESVPGEGSTFWFKLPL 910



 Score = 99.3 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 46/357 (12%), Positives = 97/357 (27%), Gaps = 19/357 (5%)

Query: 239 KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE 298
           +V          D+ L T +  +     + +P                    TL   ++ 
Sbjct: 84  EVHDARANPLFADNPLVTGEPHIR--GYAGVPISLPTGEKLGTLCAIHDEPLTLDETARN 141

Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETV--DKCPIPFFVYSHGNLFYANPSFLLLTKYKS 356
               L+      +       E+     V              G + + NP+F  L+ YK 
Sbjct: 142 RLISLARLIEELIRERVGAREHERLALVARHTHNSVVITDRDGVIDWVNPAFERLSGYKL 201

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
            +      G   L      SD+ A+K +     D                      +   
Sbjct: 202 AEVRGRLPGTFLLCPN---SDSGAVKALAEAVRDGRECQVELVNRA---KNGAEYTILIE 255

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA--IINREGII 474
                ++         ++ +       + ++   + +  S+++         + +  G++
Sbjct: 256 LTPIRDEDGCCTGFMSVQTDITAQIETRERLSRALRESQSLMDVIRQHTVFSVTDPAGVV 315

Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFL-EQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
              N A  +  GY  E+IL K     L     P      +   +                
Sbjct: 316 TDVNDAFCQQSGYTKEEILGKTHQTLLSSGMHPDAFWVEMRSTIKAGRPWRG--EICNRN 373

Query: 534 KEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
           K  +L  +  I+     +      Y     DI+  K  +  L+ +++  E      S
Sbjct: 374 KSGELFWVDSIVAPQMNAGGEIERYIFIRFDITNRKHIEAGLAASQRQLEASLERLS 430



 Score = 78.9 bits (193), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 33/290 (11%), Positives = 81/290 (27%), Gaps = 9/290 (3%)

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTK 353
              + +  +        + A ++   +L             +           S + L  
Sbjct: 6   EEDRLAALHALGLLDTGVEAGYEAITDLVTAVTGARMAAVSLVDRDR--QWFKSAVNLPA 63

Query: 354 YKSVDDIE---IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
            ++         A     + +      N       L   +      +    ++    +  
Sbjct: 64  PETPRSWAFCHYAIQQDDIYEVHDARANPLFADNPLVTGEPHIRGYAGVPISLPTGEKLG 123

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470
                                 +     +    +     E  +L  +   T + + I +R
Sbjct: 124 TLCAIHDEPLTLDETARNRLISLARLIEELIRERVGAR-EHERLALVARHTHNSVVITDR 182

Query: 471 EGIILSTNRAVSKLFGYPVEDILRK-PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
           +G+I   N A  +L GY + ++  + P T  L  N+ S     L E +       +E + 
Sbjct: 183 DGVIDWVNPAFERLSGYKLAEVRGRLPGTFLLCPNSDSGAVKALAEAVRDGRECQVELVN 242

Query: 530 LGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKI 577
                 E  + + +   +      + +     DI+   + + +LS A + 
Sbjct: 243 RAKNGAEYTILIELTPIRDEDGCCTGFMSVQTDITAQIETRERLSRALRE 292


>gi|110598781|ref|ZP_01387041.1| PAS:Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A-like [Chlorobium
           ferrooxidans DSM 13031]
 gi|110339608|gb|EAT58123.1| PAS:Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A-like [Chlorobium
           ferrooxidans DSM 13031]
          Length = 932

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 132/805 (16%), Positives = 262/805 (32%), Gaps = 75/805 (9%)

Query: 38  KSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTF----VFDPIPRTVRFTWNIDAHG 93
           K    + C     ++       E +         N +    V     R V          
Sbjct: 26  KVAASDNCQKELAETKEAAAASEMLHRNLIDYMHNGYACCRVVTEKGRPVDLI------- 78

Query: 94  YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG---DLLKRQNTWYGKTTLW 150
              E+++      G     +IG ++ +V   +       +     +++       +  + 
Sbjct: 79  -HVEVNKGYENLTGLKN--VIGRKITEVIPGIADSNPELLENHFRVVESGIAEKFEIYIE 135

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
           P     L+   +     IY   + ++      I              +  +KKF  + E 
Sbjct: 136 P-----LHKWYE---STIYCPEKGYT----VAIFDDITKRKQAEQALQNSEKKFRSITEQ 183

Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRM--KNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
                 +      I         +     ++V          ++ + +            
Sbjct: 184 MSEIVFITDSSGQISFISPAIEKITDYKPHEVIGQRFTDFLSEEEVPSALSAYKEVMLKQ 243

Query: 269 LPEQED------------FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
                             F  +++  Y +  Y GT+      S      R          
Sbjct: 244 STTHVIVLKFMRKNGTFFFGEVHVQYYHESGYSGTIGVIHDISERNRCERTRIEYEKKLL 303

Query: 317 EGENLTPETVDKCPIPFFVYS---HGNLFY--ANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
           +G+       D      FV      G+  Y   N    + T  K+ + I        L  
Sbjct: 304 DGKQFLQNIYDTVNHSVFVIDVLPDGSYRYKSINRLHEIRTGLKN-EAISGKSPREVL-- 360

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
            P ++               +       +               I     N         
Sbjct: 361 EPDVAATVTGYYDRCIHKGSSTEYEETHMFK-----GKLSWWRTILNPVRNDSGHIYRII 415

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
           G      + ++ + K++     L   ++ +   + I + EG I   N   ++  GY  ++
Sbjct: 416 GTSTNITEHKLTEEKLKT----LSFAIQQSPTVVVITDPEGNIEYINPTFTEHTGYTEKE 471

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
           ++ +   +         +     + +                K  +L     I+  +   
Sbjct: 472 VIGQNPRILKSGLMEDSVYEEFWKTILAGN--VWHGEFHNKKKNGELYWEDAIVSAIVNQ 529

Query: 552 SC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
                 +     DI+E K+    L  +K+ AE+    K+ FLA +SHEIRTP+  I+GF+
Sbjct: 530 KGVITNFVAVKEDITEKKKLWVDLIASKEKAEESDRLKTAFLANISHEIRTPMNGILGFA 589

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
           E++K      L      EY   I++SG  +L ++ND++DIS+IE+G+  +H EP  +++ 
Sbjct: 590 ELLKEPH---LSGEEQAEYIELINQSGKRMLALINDIVDISRIEAGETMIHVEPTHVNKL 646

Query: 668 VSEAISLVQLYANEKRILIRTS--FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725
           +    +  +  A  K +L+  +   ++    I  D   + QI  N++ N + F+  G   
Sbjct: 647 LHSLCTFFRPLAANKNLLLSCNNGLSDEECVIETDSAKLTQILTNLVQNGLKFSVEG--- 703

Query: 726 IISTTH-TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
            +   +    + +   V D+G+G+     E   + F Q+ NS     EG+GLGL ++KA 
Sbjct: 704 EVRVGYIRKEDLLEFSVSDSGIGIPESMKESIFERFRQVDNSLTRHHEGSGLGLSISKAY 763

Query: 785 VDANMGKFYIFSTPAKGTLIEIIFP 809
           V+   G   + S    G+      P
Sbjct: 764 VEMLGGTIRVESGEGNGSTFIFTLP 788


>gi|322421480|ref|YP_004200703.1| multi-sensor signal transduction histidine kinase [Geobacter sp.
           M18]
 gi|320127867|gb|ADW15427.1| multi-sensor signal transduction histidine kinase [Geobacter sp.
           M18]
          Length = 580

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 115/386 (29%), Positives = 190/386 (49%), Gaps = 5/386 (1%)

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLF 485
                 +  E  + R  +  ++    +  +I E+ SDG+  I   +      NRA+ ++ 
Sbjct: 196 AERTRELINEINERRQAEECLKESEQRFRTIFESNSDGLIAIRIEDHKFYMCNRAICRML 255

Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
           GY  +++LR        ++            L  ++    E              + I  
Sbjct: 256 GYREDELLRLSIADIHPEDKLPRAIRLFERELQGEISVAEELPVQRKDGSVFYADVNISP 315

Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
             L           D++E ++   +   A+  AE+    KSDFLA +SHE+RTPL ++IG
Sbjct: 316 IILYGKPHLIGAFRDVTERRKL-RESEIARLAAEEACRTKSDFLANMSHELRTPLNSVIG 374

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
           FSEV++++ +GP+ N +  EY N I  SG  +L ++ND+LD+SK+ESGKM L     SL 
Sbjct: 375 FSEVLQDELYGPM-NEKQREYVNNIHISGRHLLSLINDILDLSKVESGKMELELSAFSLR 433

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQ 724
           + + +++++ +  A    + I   F       I+AD R +KQI  N+LSNAI FTP+GG 
Sbjct: 434 DMLGDSLAMFKEKALRSAVGIHLEFDPEADANIMADQRKLKQIMFNLLSNAIKFTPAGGT 493

Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
           + +S     +  V + V DTG+G+   ++ K  KPF Q+ +      EGTGLGL L+K +
Sbjct: 494 LQVSARRMPD-FVEIAVADTGIGIKAQDIPKLFKPFTQLGSVYTKGFEGTGLGLALSKRL 552

Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPL 810
           V+ + G+  + S    G+      PL
Sbjct: 553 VELHGGRIRVKSKFGTGSRFSFTIPL 578



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/222 (10%), Positives = 59/222 (26%), Gaps = 16/222 (7%)

Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
           D  +T  + + T E +    +E        Q   +    T+   ++E    ++ R     
Sbjct: 155 DRAQTLSFLISTYESAVWQNRELSTVQKQLQTLNEMLEETIAERTRELINEINERRQ--A 212

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIE-------- 361
                E E       +                +  N +   +  Y+  + +         
Sbjct: 213 EECLKESEQRFRTIFESNSDGLIAIRIEDHKFYMCNRAICRMLGYREDELLRLSIADIHP 272

Query: 362 --IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
                    L +     + +  + + + R D +   A   +  I    +  L   F    
Sbjct: 273 EDKLPRAIRLFERELQGEISVAEELPVQRKDGSVFYADVNISPIILYGKPHLIGAFRDVT 332

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
           +  +  E   +      +   R     +     +L + L + 
Sbjct: 333 ERRKLRE--SEIARLAAEEACRTKSDFLANMSHELRTPLNSV 372



 Score = 47.7 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 11/113 (9%), Positives = 37/113 (32%), Gaps = 3/113 (2%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTWYGKTTL 149
                  +  + + +G    +++ + + D+       P         L+ + +   +  +
Sbjct: 241 DHKFYMCNRAICRMLGYREDELLRLSIADI-HPEDKLPRAIRLFERELQGEISVAEELPV 299

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
              +G+  Y  ++++ + +Y +      FR        R     R   +   +
Sbjct: 300 QRKDGSVFYADVNISPIILYGKPHLIGAFRDVTERRKLRESEIARLAAEEACR 352


>gi|288941217|ref|YP_003443457.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
 gi|288896589|gb|ADC62425.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
          Length = 977

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 106/534 (19%), Positives = 195/534 (36%), Gaps = 39/534 (7%)

Query: 311 LSAYFDEGENLTPETVDK-CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
                 E E+      D+       +   G +   N        Y   D I      S  
Sbjct: 286 AIRARAESEDRFRSVFDQQFQFMAILTPEGRVIDINELVRRFQGYAREDFIGQLFWESPA 345

Query: 370 LDA-PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
               P+  +    +       D   I         Q                        
Sbjct: 346 WRDYPEWREIWPKRLAQATTMDGPLITHDI----YQKRNGEIRMADAATTAIRGPDGAVR 401

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
                  +  + R  +  +     +L  +L    D + + + +G  L+ N     LFG P
Sbjct: 402 WYVIQATDTTERRRAEAALRESEERLRMLLRRIPDLVWLKDPDGRYLTCNARFETLFGRP 461

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
             +I+ K    F+++             ++    +  E+  +    +     ++++   +
Sbjct: 462 EAEIIGKTDYDFVDRAQADFFRANDLAAIAAGGPRVNEEEIVF-AGDGHRERIQVVKTPV 520

Query: 549 PFSSC----YSLTMHDISEWKQEKNKLSHAKK------------------IAEKESSHKS 586
             +            DI+E ++ + +L   +                    AE+ +  K 
Sbjct: 521 HDADGTVIGVLGIARDITEMRRVEQELEQHRHHLEELVAERTEELTQARLEAERLAQSKG 580

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
           +FLA +SHEIRTP+ A++G + +++ Q           E A  I RSG  +L I+ND+LD
Sbjct: 581 EFLANMSHEIRTPMNAVLGLAYLLERQPL----PDEAHELARQIHRSGQSLLHIINDILD 636

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVK 705
            SKIESG++ +   P  L E +   +++V   A +K I +      ++   ++ D   + 
Sbjct: 637 FSKIESGRIEIERIPFQLGEVLDNLVTIVGTSAADKAIDLVIRPPEDLESSLVGDPLRLG 696

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFG 761
           QI +N+ SNA+ FT  G Q+ +     +       +   VRDTG+G+         +PF 
Sbjct: 697 QILINLTSNAVKFTSDG-QVEVRVESIARSHTEVTLRFTVRDTGIGIDPETQAHLFQPFT 755

Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
           Q   S   R  G+GLGL + + + +   G+  + S P +G+   +      T H
Sbjct: 756 QADASTTRRFGGSGLGLVICRRLAELMGGRLGLDSVPGEGSTFWLELTFGLTEH 809



 Score = 73.9 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 34/321 (10%), Positives = 77/321 (23%), Gaps = 33/321 (10%)

Query: 55  TDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI 114
           TD  +   +     +SE               W  D  G     +       G    ++I
Sbjct: 408 TDTTERRRAEAALRESEERLRMLLRRIP-DLVWLKDPDGRYLTCNARFETLFGRPEAEII 466

Query: 115 GMRLCDVSDILHID--PNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172
           G    D  D    D    N +  +         +  ++  +G    + +     P++  +
Sbjct: 467 GKTDYDFVDRAQADFFRANDLAAIAAGGPRVNEEEIVFAGDGHRERIQVV--KTPVHDAD 524

Query: 173 REFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP 232
               G  G  I              ++       L   +    +  + + +  +Q     
Sbjct: 525 GTVIGVLG--IARDITEMRRVEQELEQHRHHLEELVAERTEELTQARLEAERLAQSKGEF 582

Query: 233 HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL 292
              M +++ +          +L+ +  P    E                    +Q   + 
Sbjct: 583 LANMSHEIRTPMNAVLGLAYLLERQPLPDEAHE------------------LARQIHRSG 624

Query: 293 QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLT 352
           Q+      + L      S     +       E +D         +               
Sbjct: 625 QSLLHIINDILDFSKIESGRIEIERIPFQLGEVLDNLVTIVGTSAADKAID--------L 676

Query: 353 KYKSVDDIEIAGGLSTLLDAP 373
             +  +D+E +     L    
Sbjct: 677 VIRPPEDLESSLVGDPLRLGQ 697



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/365 (9%), Positives = 91/365 (24%), Gaps = 24/365 (6%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN-------HIGDLLKRQNTW 143
             G + +I+E + +  G      IG    +       D           +          
Sbjct: 313 PEGRVIDINELVRRFQGYAREDFIGQLFWE--SPAWRDYPEWREIWPKRLAQATTMDGPL 370

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                     G       D A   I   +     +                A  +  +++
Sbjct: 371 ITHDIYQKRNGEIRMA--DAATTAIRGPDGAVRWY--VIQATDTTERRRAEAALRESEER 426

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL--RMKNKVSSLTEYYAHKDDVL---KTEK 258
              L         ++       +  +    L  R + ++   T+Y           +   
Sbjct: 427 LRMLLRRIPDLVWLKDPDGRYLTCNARFETLFGRPEAEIIGKTDYDFVDRAQADFFRAND 486

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
              + +    + E+E     + ++   +     + +        L      +     ++ 
Sbjct: 487 LAAIAAGGPRVNEEEIVFAGDGHRERIQVVKTPVHDADGTVIGVLGIARDITEMRRVEQE 546

Query: 319 ENLTPETVDKCP------IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                  +++        +         L  +   FL    ++    +    GL+ LL+ 
Sbjct: 547 LEQHRHHLEELVAERTEELTQARLEAERLAQSKGEFLANMSHEIRTPMNAVLGLAYLLER 606

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
             L D        ++RS ++ +     +          + +  IPF+        +   G
Sbjct: 607 QPLPDEAHELARQIHRSGQSLLHIINDILDFSKIESGRIEIERIPFQLGEVLDNLVTIVG 666

Query: 433 IEPED 437
               D
Sbjct: 667 TSAAD 671


>gi|78043135|ref|YP_360865.1| sensory box histidine kinase [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77995250|gb|ABB14149.1| sensory box histidine kinase [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 449

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 85/372 (22%), Positives = 167/372 (44%), Gaps = 26/372 (6%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE-Q 503
           R +     +L +IL     G+ +++R+G ++  N+ +  LFG        KP    +   
Sbjct: 96  RAINEGEKRLTAILAGIKAGVMVLDRDGRVILVNKGLENLFGKLNFTGEPKPLLEVIRNY 155

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDI 561
                +   L  +        + +         K + + +   K              DI
Sbjct: 156 ELEKFLKEALANLKE------MTREIEFLLPNSKTILIHVTPLKDEHDQKVGLVAVFDDI 209

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           +E ++ +                +S+F+A VSHE+RTPLT+I GF E + +         
Sbjct: 210 TEERKLE--------------KMRSEFIANVSHELRTPLTSIKGFLETLLDGALEDKTIA 255

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
           +   +   ++     +  +++DLL +SKIE+ K++   +P+ L E + +   L +    E
Sbjct: 256 K--HFLQIMNSETERLTRLIDDLLSLSKIEAKKVDFAPKPLMLQELIQKMKLLFKSRLEE 313

Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
           K +    S   N+P +LAD   + Q+ +N++ NAI +TP+GG+I ++        V + V
Sbjct: 314 KELSFIISLPENLPLVLADGDMISQVLINLIDNAIKYTPAGGKIEVTAAVK-GSWVEVVV 372

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
           +DTG+G+     ++  + F ++  ++     GTGLGL + K +++ + GK ++ S   +G
Sbjct: 373 KDTGIGIPEESQKRIFERFYRVDKARSRELGGTGLGLAIVKHIIELHNGKVWVKSKVGEG 432

Query: 802 TLIEIIFPLYDT 813
           +      P+  T
Sbjct: 433 SAFGFTIPIAQT 444


>gi|307824966|ref|ZP_07655188.1| PAS/PAC sensor hybrid histidine kinase [Methylobacter tundripaludum
            SV96]
 gi|307734013|gb|EFO04868.1| PAS/PAC sensor hybrid histidine kinase [Methylobacter tundripaludum
            SV96]
          Length = 1759

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 122/774 (15%), Positives = 270/774 (34%), Gaps = 49/774 (6%)

Query: 68   LDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI 127
              SE  F               D  G +  ++  L KT+G    KM+G  + +       
Sbjct: 752  AASEREFRTLAESLPDNIV-RYDLEGRVIYVNPVLEKTLGTIVSKMLGTTVRERFPNGEY 810

Query: 128  DPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187
            D    + D +           +     +NL++   +  +     N E  G    G     
Sbjct: 811  DDYAQLLDAVLTSGEIGEIEKIVTPPYSNLHLVHSIRMIAECDENGEVIGVLAIG--RDI 868

Query: 188  RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247
                      +  ++K+  L +  +    V      I +         +  ++  L+E  
Sbjct: 869  TERKLAEQALRESEEKYRTLIQKIQAAVVVHGADTQILTFNL------VAQEILGLSEDQ 922

Query: 248  AHKDDVLKTEKYPLLTSEESSLPEQEDF------------------HTINLNQYTKKQYF 289
             +    +    +    +  ++ P++                                   
Sbjct: 923  LYGKTAIDPVWHFFHENGCAASPDEYPVNKVLASGKALKNYVLGVHRPGRQQDVWVLVNA 982

Query: 290  GTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV--YSHGNLFYANPS 347
              +     +  + +      +     ++   L    +++     ++           N  
Sbjct: 983  DPVFGKDGKITQVIITFIDITQRKQAEQRLWLVDFALNQVREAVYIINLQDHRFLNVNAE 1042

Query: 348  FLLLTKYKSVDDI----------EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397
                  Y + + +            + G+  L      + + ++        D       
Sbjct: 1043 ASRALGYSTEELLDLTIYDIDPDADSEGMENL-QREIDAGSLSVFERRHKTKDGRIFPVE 1101

Query: 398  ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
                  ++    +         +  +  + +     + E       +  + ++   L ++
Sbjct: 1102 INAQVFEYEGRPTSIALVRDITERKRVEDEVRALNADLELRVLERTEA-LRLQTRYLRTL 1160

Query: 458  LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
            ++       + ++E   L  N+ ++      V++++ K       +          +E++
Sbjct: 1161 IDTLPMLAWLKDKESRFLVVNQTMALACTLSVDEMVGKSDLDCWPREYAESYRAVDSEVM 1220

Query: 518  SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAK 575
            +   R+T+E     +      +            S         DIS+ +  +     A 
Sbjct: 1221 ATGRRKTVEGPFFDAHDGVIWVETFKAPVLDVDGSVLGTVGIALDISDRRALEMAREAAL 1280

Query: 576  KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
              AE+ +  +S+F+AR+SHE+RTPL  I+G+++++  +  G   N R     N I +SG 
Sbjct: 1281 AEAERLARLRSEFMARMSHELRTPLNGILGYAQILLGESRG---NERQSAMLNVIQQSGE 1337

Query: 636  LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695
             +L+++ND+LD +KIE+GK  L    + L   +    S++ + A +K ++     A ++P
Sbjct: 1338 YLLNLINDILDFAKIEAGKQELSLSDIQLPSFLRNLASIITIKAEQKALVFVCDIAADVP 1397

Query: 696  R-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELE 754
              I AD   ++Q+ LN+LSNAI ++  G QI +  T      +   V+D+G+G+   +L+
Sbjct: 1398 AGIRADETRLRQVLLNLLSNAIKYSERG-QISLKVTVLEPGRLRFEVQDSGLGIDTGQLD 1456

Query: 755  KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
               + F Q     Q R  GTGLGLP+++ +V       ++ S   +G+      
Sbjct: 1457 TIFQAFEQA-GDWQHRTGGTGLGLPISRELVRMMDSDIHVTSRVDEGSTFWFDL 1509



 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 62/604 (10%), Positives = 161/604 (26%), Gaps = 51/604 (8%)

Query: 64   NTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD 123
            NT  L ++N              + I   G   +      + +   A  ++G  + DV  
Sbjct: 495  NTQVLQAKNKLQATLDTIP-DLLFEIGLDGRYYDYHSPCTELLLVPAEDLLGKTVSDVMP 553

Query: 124  ILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI 183
                            Q    GK    P+   + +  + +A  P   +           +
Sbjct: 554  AEAAKIVMSALREAHDQGISTGKQFQLPLPHGDFWFELSVAIKPTLDKEE----AHLIVL 609

Query: 184  VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL 243
                       A   + +++F  L E          ++        P     +  +  +L
Sbjct: 610  SRNITERKHMEAQVLQREQEFRVLVENSPDLIFRYDKECRRIYTN-PAVARLVGRRADAL 668

Query: 244  TEYYAHKDDVLKTEKY-------PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS 296
                  +  +L   +          + +       + +    +   +     +    N  
Sbjct: 669  LNMSPSEAKILSAGEADKLMQMIRQVQATGRPAESEVECLGADGQLHYFHNRYAPEFNAH 728

Query: 297  KESFEYLSHRNHPSLSAYFDEG----ENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLL 351
             E    +S     +      E     E       +  P     Y   G + Y NP     
Sbjct: 729  GEVVGVISIARDVTERKQAAEALAASEREFRTLAESLPDNIVRYDLEGRVIYVNPVLEKT 788

Query: 352  TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411
                    +     +       +  D   +   +L             +     N     
Sbjct: 789  LGTIVSKMLGTT--VRERFPNGEYDDYAQLLDAVLT--SGEIGEIEKIVTPPYSNLHLVH 844

Query: 412  AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471
              +     + ++  E +    I  +  + ++ ++ +     +  ++++     + +   +
Sbjct: 845  --SIRMIAECDENGEVIGVLAIGRDITERKLAEQALRESEEKYRTLIQKIQAAVVVHGAD 902

Query: 472  GIILSTNRAVSKLFGYPVEDILRK----PFTVFLEQNTPSVMNHY--LTEILSLDLRQTL 525
              IL+ N    ++ G   + +  K    P   F  +N  +       + ++L+       
Sbjct: 903  TQILTFNLVAQEILGLSEDQLYGKTAIDPVWHFFHENGCAASPDEYPVNKVLASGKALKN 962

Query: 526  EKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKN-------KLSHA 574
              + +     ++ + + +    +           +T  DI++ KQ +         L+  
Sbjct: 963  YVLGVHRPGRQQDVWVLVNADPVFGKDGKITQVIITFIDITQRKQAEQRLWLVDFALNQV 1022

Query: 575  KKIAEKESSHKSDFL---ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
            ++     +     FL   A  S        A+   +E + +     +      E    + 
Sbjct: 1023 REAVYIINLQDHRFLNVNAEAS-------RALGYSTEELLDLTIYDIDPDADSEGMENLQ 1075

Query: 632  RSGN 635
            R  +
Sbjct: 1076 REID 1079



 Score =  137 bits (345), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 52/524 (9%), Positives = 140/524 (26%), Gaps = 32/524 (6%)

Query: 85   FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCD--VSDILHIDPNNH-IGDLLKRQN 141
              +  D        +  + + +G  A  ++ M   +  +      D     I  +     
Sbjct: 640  LIFRYDKECRRIYTNPAVARLVGRRADALLNMSPSEAKILSAGEADKLMQMIRQVQATGR 699

Query: 142  TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
                +      +G            P ++ + E  G     I                 +
Sbjct: 700  PAESEVECLGADG--QLHYFHNRYAPEFNAHGEVVGV--ISIARDVTERKQAAEALAASE 755

Query: 202  KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
            ++F  L E    +      +  +                  L      +    + + Y  
Sbjct: 756  REFRTLAESLPDNIVRYDLEGRVIYVNPVLEKTLGTIVSKMLGTTVRERFPNGEYDDYAQ 815

Query: 262  LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ-----NNSKESFEYLSHRNHPSLSAYFD 316
            L     +  E  +   I    Y+      +++     + + E    L+     +     +
Sbjct: 816  LLDAVLTSGEIGEIEKIVTPPYSNLHLVHSIRMIAECDENGEVIGVLAIGRDITERKLAE 875

Query: 317  EGENLTPE----TVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIE--IAGGLSTL 369
            +    + E     + K      V+     +   N     +                +   
Sbjct: 876  QALRESEEKYRTLIQKIQAAVVVHGADTQILTFNLVAQEILGLSEDQLYGKTAIDPVWHF 935

Query: 370  LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS-LAMTFIPFEKANQFPENM 428
                  + +    PV    +     A    +  +        + +         +  +  
Sbjct: 936  FHENGCAASPDEYPVNKVLASGK--ALKNYVLGVHRPGRQQDVWVLVNADPVFGKDGKIT 993

Query: 429  PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGY 487
                   +    +  ++++ +    +   L    + + IIN ++   L+ N   S+  GY
Sbjct: 994  QVIITFIDITQRKQAEQRLWL----VDFALNQVREAVYIINLQDHRFLNVNAEASRALGY 1049

Query: 488  PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
              E++L       ++ +  S     L   +        E+     TK+ ++  + I  + 
Sbjct: 1050 STEELLDLTIYD-IDPDADSEGMENLQREIDAGSLSVFER--RHKTKDGRIFPVEINAQV 1106

Query: 548  LPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
              +         + DI+E K+ ++++       E     +++ L
Sbjct: 1107 FEYEGRPTSIALVRDITERKRVEDEVRALNADLELRVLERTEAL 1150



 Score =  124 bits (312), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 61/454 (13%), Positives = 121/454 (26%), Gaps = 27/454 (5%)

Query: 155 TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRAL---GKRLDKKFSHLHEIK 211
              ++   L    I       +G   F +V + R      AL     +   K     +  
Sbjct: 459 EQRWLWTVLGGSVIM-----LTGAAFF-LVRLRRSHRRLEALNTQVLQAKNKLQATLDTI 512

Query: 212 KGHSSVEKEKYDIFSQQSP--PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
                        +   SP     L     +   T       +  K     L  + +  +
Sbjct: 513 PDLLFEIGLDGRYYDYHSPCTELLLVPAEDLLGKTVSDVMPAEAAKIVMSALREAHDQGI 572

Query: 270 PE-----QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
                      H     + +        +  +       +      + A   + E     
Sbjct: 573 STGKQFQLPLPHGDFWFELSVAIKPTLDKEEAHLIVLSRNITERKHMEAQVLQREQEFRV 632

Query: 325 TVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
            V+  P   F Y       Y NP+   L   +  D +         + +   +D      
Sbjct: 633 LVENSPDLIFRYDKECRRIYTNPAVARLVG-RRADALLNMSPSEAKILSAGEADKLMQ-- 689

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
            M+ +   T   A + +  +  +             + N   E +    I  +  + +  
Sbjct: 690 -MIRQVQATGRPAESEVECLGADG-QLHYFHNRYAPEFNAHGEVVGVISIARDVTERKQA 747

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
              +     +  ++ E+  D I   + EG ++  N  + K  G  V  +L          
Sbjct: 748 AEALAASEREFRTLAESLPDNIVRYDLEGRVIYVNPVLEKTLGTIVSKMLGTTVRERFPN 807

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS-LRIIIKKLPFSS--CYSLTMHD 560
                    L  +L+      +EKI         L+  +R+I +               D
Sbjct: 808 GEYDDYAQLLDAVLTSGEIGEIEKIVTPPYSNLHLVHSIRMIAECDENGEVIGVLAIGRD 867

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
           I+E K  +  L  + +   +    K    A V H
Sbjct: 868 ITERKLAEQALRES-EEKYRTLIQKIQ-AAVVVH 899


>gi|239908782|ref|YP_002955524.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239798649|dbj|BAH77638.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 968

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 119/643 (18%), Positives = 215/643 (33%), Gaps = 51/643 (7%)

Query: 191 NDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP---PPHLRMKNKVSSLTEYY 247
              +A   R +K+F  L    K    + +      +  S      +     ++  +    
Sbjct: 200 EALQAELSRSEKRFRSLFHGNKALFLLIEPLSGKITDASAGAVDFYGYSLEELKGMNISQ 259

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ--NNSKESFEYLSH 305
            +     +      L                  +  T +     ++              
Sbjct: 260 INMLSPEEIASMRALAMSGYKQQFIFPHKLKTGDVKTVEVISTPVESGGKELLFSIVQDV 319

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAG 364
                     +E        V+      ++    G L   N +    T Y   + + +A 
Sbjct: 320 TARQKALEDLEESRERLRAVVENAAAAIYLADESGRLVEVNAAAEQQTGYMREELLAMAI 379

Query: 365 GL---------STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
                               S             D T      R   ++ +         
Sbjct: 380 PDVDANSSKNDPAFFQEVMQSATGMTFESRHRHKDGTIFPVEVRAAKLELH--------- 430

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI-I 474
                           GI  +    +  +RK+      L ++L+     + +++     +
Sbjct: 431 ----------SVPHVLGIVSDLTSRKDTERKLAEANRTLAAVLDGIPALVNVVDVSTREV 480

Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
           L  NRA+ +  G      +           +    N  +  + +    +    +      
Sbjct: 481 LFMNRALKEALGRDG---VGGVCHAIFRDKSCVCENCPIERMSANTEGEANASVWEDRNP 537

Query: 535 -EEKLLSLRIIIKKLPFSSCYSLTMH-DISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
              +       I          + +  DI + KQ +  L  +K+ AE  +  KS FLA +
Sbjct: 538 ISGRWQLNHDRILPWFDGKTVRVQISLDIGQRKQAEEALKQSKEEAESANKAKSVFLANM 597

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHEIRTPL  I+G  +++K        N    EY     RS N +  +++D+LDIS+IE+
Sbjct: 598 SHEIRTPLNGILGMLQLLKTTD----PNDEQKEYLLGAIRSTNRLTRLLSDILDISRIEA 653

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNI 711
           GKM +      +         L  + A  K +L+   + N +P +L  D   ++QI  N+
Sbjct: 654 GKMQIVESEFDIKMIWDSISELFDMEARGKGLLLEFRWDNILPMLLVGDEARLRQILFNL 713

Query: 712 LSNAIHFTPSGGQIIISTTHTSNE-----EVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
           + NAI FT  G +I I  +           V++ V DTG+G++  +L+   +PF Q   S
Sbjct: 714 VGNAIKFTEKG-KIRIDASLLPRSSDSSVRVLVTVSDTGIGISEEQLKDIFEPFVQAEGS 772

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
              R +G GLGL + + +V    G   I STP +GT   +  P
Sbjct: 773 YTRRFQGAGLGLSIVRRLVKLLDGDISIDSTPGEGTTFYLSLP 815



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/371 (8%), Positives = 83/371 (22%), Gaps = 24/371 (6%)

Query: 93  GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPI 152
           G + + S       G    ++ GM +  ++ +   +  +     +     +  +      
Sbjct: 232 GKITDASAGAVDFYGYSLEELKGMNISQINMLSPEEIASMRALAMSG---YKQQFIFPHK 288

Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212
             T     +++ + P+ S  +E      F IV             +   ++   + E   
Sbjct: 289 LKTGDVKTVEVISTPVESGGKELL----FSIVQDVTARQKALEDLEESRERLRAVVENAA 344

Query: 213 GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS---EESSL 269
               +  E   +    +         +   L       D                  + +
Sbjct: 345 AAIYLADESGRLVEVNAAAEQQTGYMREELLAMAIPDVDANSSKNDPAFFQEVMQSATGM 404

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKE--SFEYLSHRNHPSLSAYFDEGENLTPETVD 327
             +      +   +  +     L+ +S            +         E        +D
Sbjct: 405 TFESRHRHKDGTIFPVEVRAAKLELHSVPHVLGIVSDLTSRKDTERKLAEANRTLAAVLD 464

Query: 328 KCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
             P    V       + + N +              + G    +         N     M
Sbjct: 465 GIPALVNVVDVSTREVLFMNRALKEALGRD-----GVGGVCHAIFRDKSCVCENCPIERM 519

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
              ++       A     +     S             F     +  I  +    +  + 
Sbjct: 520 SANTEG-----EANASVWEDRNPISGRWQLNHDRILPWFDGKTVRVQISLDIGQRKQAEE 574

Query: 446 KMEIEVMQLCS 456
            ++    +  S
Sbjct: 575 ALKQSKEEAES 585



 Score = 54.6 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 26/249 (10%), Positives = 66/249 (26%), Gaps = 8/249 (3%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            +  D  G L E++    +  G    +++ M + DV      +      ++++       
Sbjct: 347 IYLADESGRLVEVNAAAEQQTGYMREELLAMAIPDVDANSSKNDPAFFQEVMQSATGMTF 406

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           ++     +GT   V +  A L ++S           GIV       D        ++  +
Sbjct: 407 ESRHRHKDGTIFPVEVRAAKLELHSVPHVL------GIVSDLTSRKDTERKLAEANRTLA 460

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
            + +      +V           +      +         +   +D     E  P+    
Sbjct: 461 AVLDGIPALVNVVDVSTREVLFMNRALKEALGRDGVGGVCHAIFRDKSCVCENCPIERMS 520

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNN--SKESFEYLSHRNHPSLSAYFDEGENLTP 323
            ++  E       + N  + +      +           +            +E    + 
Sbjct: 521 ANTEGEANASVWEDRNPISGRWQLNHDRILPWFDGKTVRVQISLDIGQRKQAEEALKQSK 580

Query: 324 ETVDKCPIP 332
           E  +     
Sbjct: 581 EEAESANKA 589


>gi|194334238|ref|YP_002016098.1| multi-sensor signal transduction histidine kinase [Prosthecochloris
           aestuarii DSM 271]
 gi|194312056|gb|ACF46451.1| multi-sensor signal transduction histidine kinase [Prosthecochloris
           aestuarii DSM 271]
          Length = 737

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 105/543 (19%), Positives = 212/543 (39%), Gaps = 29/543 (5%)

Query: 279 NLNQYTKKQYFGTLQNNSKESFEYLSHRNH----PSLSAYFDEGENLTPETVDKCPIPFF 334
           +   + +      ++NN      +L+ +                E    E  D  P P F
Sbjct: 214 DGELFWENIIISPVRNNVHSISHFLAIKEDVTEKIRDKEALATSERRFRELSDLLPQPVF 273

Query: 335 VYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393
                  + Y N +   +  YK  D          L    +           + +  +  
Sbjct: 274 ETDGSNTVTYFNRAGYTVFGYKGKDLDRGLNVF-QLFSPQERGTIEEN----IRKRIKGE 328

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
            +A      ++ +  +   + +          + +   GI  +    +  +RK++     
Sbjct: 329 KSADYEYRALKKDGSSFPVLVYCAPIMTQAGFQGIR--GIVLDITHRKQYERKIKENEAN 386

Query: 454 LCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
             ++ +   D I + + + G I+  NR     FGY  +++      +         ++  
Sbjct: 387 YRNLFQVIPDPIIVADFKSGNIVHWNRKALSFFGYSKKELAALSVEMLFS----RTVDDK 442

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNK 570
                      T        TK+   + + +      FS      +   DI+E K+ +  
Sbjct: 443 REMTGFAGTMSTASVEAQIRTKDGFTIEVLVSSVLFDFSKHKRLLVVFRDITEQKKSE-- 500

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
                ++ ++    K+DF+A VSHE+R+PL +I+GFS  +  +R   L      E+   I
Sbjct: 501 -----RLIKENIRLKNDFIANVSHELRSPLFSILGFSSTLLKER-KELDFETTGEFLGII 554

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
                 +  ++ D+L++S+I+SGK+    + +     V  A   +++ A+EK +      
Sbjct: 555 HDESKRLSSLIEDVLNVSRIDSGKVAYKKKIIDPAPVVIGACESLKMMASEKSVEFSIHV 614

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
                ++ AD  ++KQ+ +N+  NAI FTP  G + +S +      ++L V+D+GVG+  
Sbjct: 615 EPETMQVNADPDALKQVVINLAVNAIKFTPRDGCVRVSLS-NDAHWMVLTVKDSGVGIPE 673

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            + +K  + F ++        EGTGLGLP+ K ++ A+ G   + S    G+   +  PL
Sbjct: 674 SDYDKIFEKFYRVERPG-EEIEGTGLGLPIVKEIIAAHKGSIEVNSKKDFGSTFFVRLPL 732

Query: 811 YDT 813
             +
Sbjct: 733 STS 735



 Score =  113 bits (284), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 31/270 (11%), Positives = 75/270 (27%), Gaps = 14/270 (5%)

Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
                 +   L  E +D+ P+   +   +G + Y NP F  +T Y S D +     +   
Sbjct: 124 SEFSLKQQVRLLNEAMDQSPVSIVITDFNGLIEYVNPFFCRVTGYSSEDVLHQKVSI--- 180

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
                    +  + +    S                          I     N       
Sbjct: 181 -LKSGEHSQDFYRILWETISGGKVWQGEICNK---KKDGELFWENIIISPVRNNVHSISH 236

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
              I+ +  +   +K  +     +   + +     +   +    +   NRA   +FGY  
Sbjct: 237 FLAIKEDVTEKIRDKEALATSERRFRELSDLLPQPVFETDGSNTVTYFNRAGYTVFGYKG 296

Query: 490 EDI-LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
           +D+                 +   + + +  +     +       K+     + +    +
Sbjct: 297 KDLDRGLNVFQLFSPQERGTIEENIRKRIKGEKSA--DYEYRALKKDGSSFPVLVYCAPI 354

Query: 549 PFSSCYS---LTMHDISEWKQEKNKLSHAK 575
              + +      + DI+  KQ + K+   +
Sbjct: 355 MTQAGFQGIRGIVLDITHRKQYERKIKENE 384



 Score = 88.5 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 39/375 (10%), Positives = 95/375 (25%), Gaps = 26/375 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH-IDPNNHIGDLLKRQNTWYGKT 147
            D +G ++ ++    +  G  +  ++  ++  +    H  D    + + +     W G+ 
Sbjct: 149 TDFNGLIEYVNPFFCRVTGYSSEDVLHQKVSILKSGEHSQDFYRILWETISGGKVWQGEI 208

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                +G   +  I ++  P+ +     S F    I          +      +++F  L
Sbjct: 209 CNKKKDGELFWENIIIS--PVRNNVHSISHF--LAIKEDVTEKIRDKEALATSERRFREL 264

Query: 208 HEIKKGHSSVEKEKYDIFSQQSP---PPHLRMKNKVSSLTEYYAHKDDVLKT--EKYPLL 262
            ++             +             + K+    L  +         T  E     
Sbjct: 265 SDLLPQPVFETDGSNTVTYFNRAGYTVFGYKGKDLDRGLNVFQLFSPQERGTIEENIRKR 324

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS---KESFEYLSHRNHPSLSAYFDEGE 319
              E S   +      + + +    Y   +   +         L   +         E E
Sbjct: 325 IKGEKSADYEYRALKKDGSSFPVLVYCAPIMTQAGFQGIRGIVLDITHRKQYERKIKENE 384

Query: 320 NLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
                     P P  V     GN+ + N   L    Y   +    A  +  L        
Sbjct: 385 ANYRNLFQVIPDPIIVADFKSGNIVHWNRKALSFFGYSKKEL--AALSVEMLFSRTVDDK 442

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
                         T   AS        +      +        ++         +  + 
Sbjct: 443 REMTGFA------GTMSTASVEAQIRTKDGFTIEVLVSSVLFDFSKH---KRLLVVFRDI 493

Query: 438 VDTRINKRKMEIEVM 452
            + + ++R ++  + 
Sbjct: 494 TEQKKSERLIKENIR 508



 Score = 76.2 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 56/140 (40%), Gaps = 6/140 (4%)

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
           ++ +V  L   ++ +   I I +  G+I   N    ++ GY  ED+L +  ++       
Sbjct: 128 LKQQVRLLNEAMDQSPVSIVITDFNGLIEYVNPFFCRVTGYSSEDVLHQKVSILKSGEHS 187

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDIS 562
                 L E +S       +       K+ +L    III  +  +    S +     D++
Sbjct: 188 QDFYRILWETISGGK--VWQGEICNKKKDGELFWENIIISPVRNNVHSISHFLAIKEDVT 245

Query: 563 EWKQEKNKLSHAKKIAEKES 582
           E  ++K  L+ +++   + S
Sbjct: 246 EKIRDKEALATSERRFRELS 265



 Score = 46.6 bits (109), Expect = 0.018,   Method: Composition-based stats.
 Identities = 22/155 (14%), Positives = 43/155 (27%), Gaps = 10/155 (6%)

Query: 68  LDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMR---LCDVSDI 124
             SE  F            +  D    +   +       G    K +          S  
Sbjct: 255 ATSERRFRELSDLLPQP-VFETDGSNTVTYFNRAGYTVFGYK-GKDLDRGLNVFQLFSPQ 312

Query: 125 LHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIV 184
                  +I   +K + +   +      +G++   P+ +   PI ++   F G RG  IV
Sbjct: 313 ERGTIEENIRKRIKGEKSADYEYRALKKDGSSF--PVLVYCAPIMTQAG-FQGIRG--IV 367

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEK 219
                        K  +  + +L ++      V  
Sbjct: 368 LDITHRKQYERKIKENEANYRNLFQVIPDPIIVAD 402


>gi|172060290|ref|YP_001807942.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria
           MC40-6]
 gi|171992807|gb|ACB63726.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria
           MC40-6]
          Length = 989

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 110/645 (17%), Positives = 235/645 (36%), Gaps = 31/645 (4%)

Query: 182 GIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS 241
           G     R      A+            ++    + V      +          R   +V 
Sbjct: 128 GAERRLRESEQRYAITLSSIGDGVLSTDVDGFVTFVNLAGEALTGWSRSEATGRRLGEVF 187

Query: 242 SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301
           SL +   H   +       L T  +  LP +        +    +     + +       
Sbjct: 188 SLHDENTHAP-IEDPMAAVLQTGSDGGLPARAILRARGGSDLPVECTGTPMTDERGVRQG 246

Query: 302 YLSHRNHPSLSAYFDEGE------NLTPETVDKCPIPFFV-------YSHGNLFYANPSF 348
            +      +      E E            +    +  +        +  G   Y+N   
Sbjct: 247 IVIVFRDVTQKRRAQEAEILRETNARLEMAMYGSNVGVWEIDMPEGDHKRGFARYSN--I 304

Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
                + +           ++L        +      L   D        RL   +    
Sbjct: 305 YEWLGFDTPQARLDYEAYMSVLHPDHRDSTDRAVASFLESGDG-LFELENRL---RHRDG 360

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468
               +      + +   + +   G   +  + ++ ++ +     +     E  + G+A  
Sbjct: 361 TDRWVLVRGTARRDAMGKPVRFVGSLVDITELKMTEQALRASEERFRGTFENAAVGVAHC 420

Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528
           + +G  L  N    ++ G+P + +  +     +  +           +L+    +   + 
Sbjct: 421 DLDGRFLRVNHRSGEIVGWPRDALQHRRLHDLIHADFSVASIERF-RLLTEGKLKHYSEE 479

Query: 529 TLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
                 + + + + + +     +S       + + DISE K  +  +  AK  AE  S  
Sbjct: 480 VPLVRFDGERVWVTLSVALQHDASGQTAHVIVIIQDISERKALEETVRVAKDAAEAASRA 539

Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
           K  FLA +SHE+RTPL  I+G++++++        + R +     I++SG  +L ++ND+
Sbjct: 540 KDQFLANISHELRTPLNGILGYAQILQRDVR---LDTRQLASVGVIEQSGQHLLTLINDI 596

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRS 703
           LD +++ +GK+ L    V L   +     +V + A +KR+++    A ++P  +  D R 
Sbjct: 597 LDFARLGAGKLELQVGEVPLRGFLETIAEIVAVRAQQKRLVLNYVAAPDLPAVVRVDERR 656

Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
           ++Q+ LN+L+NA+ FT  G ++ +S +  +   +   VRDTG+G++   LE   +PF Q 
Sbjct: 657 LRQVLLNLLANAVQFTDRG-EVTLSVSRGAAGRLRFEVRDTGIGVSADRLEAIFQPFEQA 715

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
                 R  G GLGL +++ +V    G+  + S+  +G++     
Sbjct: 716 -GDHTRRSGGAGLGLAISQQLVRMMGGEIEVTSSAGEGSVFGFEL 759



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/273 (10%), Positives = 74/273 (27%), Gaps = 22/273 (8%)

Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL-LDAPKLSDNNAIKPVMLYRSDR 391
             +     +  A      +++   V       G   L L     + +     +M  R + 
Sbjct: 6   ILIVEDDRIV-ARDIAQQMSRAGYVVVGSTGSGEEALALVETLPAGSKPDLVLMDVRLEG 64

Query: 392 TCIAASARLHTIQWNRENSLAMTFIP---FEKANQFPENMPQNGIEPEDVDTRI------ 442
                       +      + +T        +     E         +D+  R       
Sbjct: 65  ELDGIDTARCIREARDIPVVFLTAYADEETIRRATAAEPYGYVLKPFDDMQLRTVVEMAL 124

Query: 443 ----NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
                +R++     +    L +  DG+   + +G +   N A   L G+   +   +   
Sbjct: 125 YKHGAERRLRESEQRYAITLSSIGDGVLSTDVDGFVTFVNLAGEALTGWSRSEATGRRLG 184

Query: 499 VFL---EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY- 554
                 ++NT + +   +  +L       L    +   +    L +      +       
Sbjct: 185 EVFSLHDENTHAPIEDPMAAVLQTGSDGGLPARAILRARGGSDLPVECTGTPMTDERGVR 244

Query: 555 ---SLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
               +   D+++ ++ +      +  A  E + 
Sbjct: 245 QGIVIVFRDVTQKRRAQEAEILRETNARLEMAM 277



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/390 (9%), Positives = 104/390 (26%), Gaps = 32/390 (8%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP----NNHIGDLLKRQ- 140
             + D  G++  ++       G    +  G RL +V  +   +      + +  +L+   
Sbjct: 151 VLSTDVDGFVTFVNLAGEALTGWSRSEATGRRLGEVFSLHDENTHAPIEDPMAAVLQTGS 210

Query: 141 -NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSG-FRGFGIVHVNRVDNDPRALGK 198
                 +  L    G++  +P++    P+        G    F  V   R   +   L +
Sbjct: 211 DGGLPARAILRARGGSD--LPVECTGTPMTDERGVRQGIVIVFRDVTQKRRAQEAEILRE 268

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP-----------PPHLRMKNKVSSLTEYY 247
              +    ++    G   ++  + D     +             P  R+  +      + 
Sbjct: 269 TNARLEMAMYGSNVGVWEIDMPEGDHKRGFARYSNIYEWLGFDTPQARLDYEAYMSVLHP 328

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
            H+D          L S +     +      +             ++   +   ++    
Sbjct: 329 DHRDST-DRAVASFLESGDGLFELENRLRHRDGTDRWVLVRGTARRDAMGKPVRFVGSLV 387

Query: 308 HPSL----SAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEI 362
             +            E     T +   +        G     N     +  +   D ++ 
Sbjct: 388 DITELKMTEQALRASEERFRGTFENAAVGVAHCDLDGRFLRVNHRSGEIVGWPR-DALQH 446

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
                 L D      + A        ++      S  +  ++++ E  + +T     + +
Sbjct: 447 R----RLHDLIHADFSVASIERFRLLTEGKLKHYSEEVPLVRFDGER-VWVTLSVALQHD 501

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
              +      I  +  + +  +  + +   
Sbjct: 502 ASGQTAHVIVIIQDISERKALEETVRVAKD 531



 Score = 68.5 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 33/373 (8%), Positives = 87/373 (23%), Gaps = 18/373 (4%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ--NTWYGKT 147
           D  G    ++    + +G     +   RL D+        +     LL       +  + 
Sbjct: 421 DLDGRFLRVNHRSGEIVGWPRDALQHRRLHDLIHADFSVASIERFRLLTEGKLKHYSEEV 480

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
            L   +G    V + L+    +  + + +      I+             +         
Sbjct: 481 PLVRFDGE--RVWVTLSVALQHDASGQTAHV--IVIIQDISERKALEETVRVAKDAAEAA 536

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT---- 263
              K    +    +           + ++  +   L         V++     LLT    
Sbjct: 537 SRAKDQFLANISHELRT-PLNGILGYAQILQRDVRLDTRQLASVGVIEQSGQHLLTLIND 595

Query: 264 --SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE-YLSHRNHPSLSAYFDEGEN 320
                     + +     +      +    +     +     L++   P L A     E 
Sbjct: 596 ILDFARLGAGKLELQVGEVPLRGFLETIAEIVAVRAQQKRLVLNYVAAPDLPAVVRVDER 655

Query: 321 LTPE-TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
              +  ++           G +  +             +  +   G+S            
Sbjct: 656 RLRQVLLNLLANAVQFTDRGEVTLSVSRGAA--GRLRFEVRDTGIGVSADRLEAIFQPFE 713

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
                   RS    +  +     ++         +         F  + P +   P +  
Sbjct: 714 QAGDHT-RRSGGAGLGLAISQQLVRMMGGEIEVTSSAGEGSVFGFELDAPASAAWPCERI 772

Query: 440 TRINKRKMEIEVM 452
            R+   +++    
Sbjct: 773 PRLQADRLDGARR 785


>gi|302878541|ref|YP_003847105.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
           ES-2]
 gi|302581330|gb|ADL55341.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
           ES-2]
          Length = 1115

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 159/807 (19%), Positives = 292/807 (36%), Gaps = 57/807 (7%)

Query: 32  NGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDA 91
           N     K+  E P        + TD  ++  +N    D    F        V   + ++A
Sbjct: 74  NAMRARKALGEFPPDVQPTTLSKTDAVKKWTANPVLEDINKYFELTQRSLGVDLVFLVNA 133

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151
            G     S       G      IG    D                 +   TW+       
Sbjct: 134 AGDCISASNW-----GQPGVS-IGTNFSD-------------RQWFQDAKTWFRGMQY-- 172

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFR---------GFGIVHVNRVDNDPR-ALGKRLD 201
             G   +VP    + PI   + +F G           GF     +    D    +    D
Sbjct: 173 AVGKTTHVPGLYFSTPIV-LDGKFQGAVVAKIDLPTLGFLTQRADAYIVDSNGVIIMAHD 231

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT------EYYAHKDDVLK 255
            +   L       + + ++      Q++    L++++   S        E + H      
Sbjct: 232 PEMVMLTIPDATVNKLSRQDKQQLYQRTEFASLKIESWKGSDRLKRINGENFPHVLAATS 291

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
             +Y +    ES LP          N +      G           Y       +     
Sbjct: 292 LPEYGMTVYAESDLPGIAVLERDRRNMFFLISLLGCTLILIGGGLIYYFRSVRDAKHT-V 350

Query: 316 DEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
           +E E+     ++      +  S   G   + N +   +  Y+  + +     L +L+   
Sbjct: 351 EESESRLRLLLESVNGGIWGQSLNGGICTFINAAGAKMLGYQPDELLGQ--SLHSLVHHT 408

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
                +    +    +           + + W R+ +            +         +
Sbjct: 409 YPDGAHYEAEICPMHATSLDGIPRKINNEVLWRRDGTSIAVEYSTHPMYRDGRIEGTVVV 468

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
             +  + +  +R+M+       + ++ + DG   ++ EG +L  N A  +  GY  +++L
Sbjct: 469 FEDITERQRMERQMQERDAVYSAAIKTSVDGFWTVDLEGYLLEVNDAYVQASGYTRDELL 528

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP-FSS 552
               +     ++ + +   + +I         E  +   TK  ++  + + +   P    
Sbjct: 529 SMRVSQLEVIDSEADVETRIEKIRREGSD---EFESRHRTKAGRIWDVSVAVSYAPIAGG 585

Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
                + DI+E KQ+   L  A++ AE  +  KSDFLA +SHEIRTP+ A+IGFSE+  +
Sbjct: 586 RLFCFVKDITERKQQAKLLEAAREKAESANRAKSDFLANMSHEIRTPMNAVIGFSELALD 645

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
                        +   I  S   +L I+ND+LD SKIES +M L  E ++LDE + +  
Sbjct: 646 DPNPV----SQRAHLQQIIESSRSLLGILNDILDFSKIESRQMTLEMEVLNLDELLGQVR 701

Query: 673 SLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQ-IIISTT 730
            +  + A E+ + +  +    +P IL  D   ++QI  N+L NAI FT  G   + +   
Sbjct: 702 RMFVMQAKERTLDLVVAREAGVPNILTGDPLRLRQILTNLLGNAIKFTNQGAVSLNVRAI 761

Query: 731 HTSNEEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
            T++E V     V+D+G+GM+  +L    +PF Q  NS   R  GTGLGL +++ +    
Sbjct: 762 QTNSENVTLDFCVKDSGIGMSAAQLASLFQPFVQADNSITRRFGGTGLGLTISRNLARLM 821

Query: 789 MGKFYIFSTPAKGTLIE--IIFPLYDT 813
            G   + S    G+     +  P+ + 
Sbjct: 822 DGDIRVDSVAGTGSEFHFEVTLPIANA 848



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 54/400 (13%), Positives = 115/400 (28%), Gaps = 39/400 (9%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK 146
           W +D  GYL E+++   +  G    +++ MR+  +  I          + ++R+ +   +
Sbjct: 501 WTVDLEGYLLEVNDAYVQASGYTRDELLSMRVSQLEVIDSEADVETRIEKIRREGSDEFE 560

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
           +      G    V + ++  PI       +G R F  V           L +   +K   
Sbjct: 561 SRHRTKAGRIWDVSVAVSYAPI-------AGGRLFCFVKDITERKQQAKLLEAAREKAES 613

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
            +  K    +    +         P +  +     +L +           +      S  
Sbjct: 614 ANRAKSDFLANMSHEIRT------PMNAVIGFSELALDDPNPVSQRAHLQQIIESSRSLL 667

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
             L +  DF  I   Q T +     L     +       +            E   P  +
Sbjct: 668 GILNDILDFSKIESRQMTLEMEVLNLDELLGQVRRMFVMQAKERTLDLVVAREAGVPNIL 727

Query: 327 DKCPIP---FFVYSHGN-LFYANPSFLLL---------------TKYKSVDDIEIAGGLS 367
              P+          GN + + N   + L                  K       A  L+
Sbjct: 728 TGDPLRLRQILTNLLGNAIKFTNQGAVSLNVRAIQTNSENVTLDFCVKDSGIGMSAAQLA 787

Query: 368 TLLDAPKLSDNNAIKP-------VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
           +L      +DN+  +        + + R+    +    R+ ++            +P   
Sbjct: 788 SLFQPFVQADNSITRRFGGTGLGLTISRNLARLMDGDIRVDSVAGTGSEFHFEVTLPIAN 847

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
           A Q   ++       +       KR + +E  ++  +L  
Sbjct: 848 AMQLASHVKDVPPVQDMTQALYGKRALLVEDNKVNQLLAT 887


>gi|256828637|ref|YP_003157365.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256577813|gb|ACU88949.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 957

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 125/821 (15%), Positives = 260/821 (31%), Gaps = 94/821 (11%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQN-T 142
            +     G     +  + +  G  + + +     +V    H D         LL  Q+  
Sbjct: 7   IFTSSPEGRYLSANPAMARIFGYASPQALVAASAEVGTGSHADSAEGGAFLRLLDVQDEI 66

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
           +  +T     +G+   V +  +A  +   + +   F GF  V          A+      
Sbjct: 67  FDRETRHLRRDGS--EVWVSTSARAVRDSSGKTLHFLGF--VTEITPRKQVEAVLAHERN 122

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE----------------- 245
            +  L   +       +                  N    +                   
Sbjct: 123 LYRDLVASQPAGVYRLRVLAQKPWGPEEWVEKLESNYTLEMVSDRFCEILGATREECQAN 182

Query: 246 -----YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL---QNNSK 297
                   H +D        +L  E  S    E                        +  
Sbjct: 183 ASIVIERMHSEDRADFVARNVLAVESLSRFTWEGRIESADGDRWVHFESVPRSLDNGDVL 242

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSV 357
            +   L            D+         +   +     S   +  A+   +  T    +
Sbjct: 243 WTGILLDISGFKQAERASDQRARELAALHELSMVVSSSLSLDQIVAASVRVVRETTGSDM 302

Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL--------------HTI 403
             + +  G   LL A    D+  +   +       C+   A L                 
Sbjct: 303 VYLFLRQGERLLLQAVCPQDSEMLLHEVHEHRVGECLCGLAVLDGEPQYSNDILSDDRCT 362

Query: 404 QWNRENSLAMTFIPFEKANQF----------------------------------PENMP 429
           +   + +  ++F      +                                         
Sbjct: 363 RQECKEAGILSFAALPLRDGRDVIGVMGLASRTPRDFHPQSEFLETQAHQVSIALVNARL 422

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI--INREGIILSTNRAVSKLFGY 487
                 E  +    ++ +      + ++L+    G+A+  ++ +      N    + +G 
Sbjct: 423 YEKANQELDNRIQAEKTLREREEFIRTVLDNLPVGVAVNTVSPDVRFEYMNELFPRFYGT 482

Query: 488 PVEDIL---RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
             E I          + E      +   +T   +   ++ +    +   ++++   +   
Sbjct: 483 TRESITAPEGFWEAAYPEPEFRGKIRGMVTAGCASGSQERMCWADVPIMRQDETRFVTAR 542

Query: 545 IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
              LP ++    T+ D++E KQ +  ++ AK  AE  S  K++FLA +SHE+RTPL  ++
Sbjct: 543 NIPLPGTNLMISTVWDVTERKQAEQAMARAKDAAESASQAKNEFLANMSHELRTPLNGVM 602

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
              ++++        N    EY +   +S   +  +++DLLDIS+IE+GK+ +  E  ++
Sbjct: 603 AMMQLLEMTPL----NGEQTEYVHLARKSSERLTRLLSDLLDISRIEAGKVEIREEAFAV 658

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG 723
            E +     L    A  K + +  S   ++P  +  D   ++Q+  N++ NA+ FT  G 
Sbjct: 659 QELLQSVSELFNTSAQSKGVSLELSTDPSVPPRLKGDAARLRQVLFNLVGNALKFTDQGF 718

Query: 724 QIIISTTHTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
             +  T           ++  V DTG+G+ + +      PF Q+  +   R +G GLGL 
Sbjct: 719 VRVELTALPPRGLEQCRILFSVMDTGIGIPSEKQHDLFTPFFQVEGAYTRRYQGAGLGLA 778

Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820
           + + +V+   G   + S   +GT + +  PL  T    D +
Sbjct: 779 IVRRLVELMGGHITLDSIFGEGTEVHVALPLGLTESEADAL 819



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 43/119 (36%), Gaps = 4/119 (3%)

Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520
              GI   + EG  LS N A++++FGY     L          +            L   
Sbjct: 3   APIGIFTSSPEGRYLSANPAMARIFGYASPQALVAASAEVGTGSHADSAEGGAFLRLLDV 62

Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAK 575
             +  ++ T    ++   + +    + +  SS     +   + +I+  KQ +  L+H +
Sbjct: 63  QDEIFDRETRHLRRDGSEVWVSTSARAVRDSSGKTLHFLGFVTEITPRKQVEAVLAHER 121


>gi|212638358|ref|YP_002314878.1| signal transduction histidine kinase [Anoxybacillus flavithermus
           WK1]
 gi|212559838|gb|ACJ32893.1| Signal transduction histidine kinase [Anoxybacillus flavithermus
           WK1]
          Length = 587

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 94/396 (23%), Positives = 182/396 (45%), Gaps = 27/396 (6%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINK--RKMEIEVMQLCSILEATSDGIAIINREGIIL 475
                   +           +   + +  R  E++  +L +++E    G+ +I++ G I 
Sbjct: 206 ARTYESREDETGMLSQSLNILARNLQEMVRTQEMQQDRLRALIENIGSGLILIDQRGYIS 265

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
             NRA  ++F     D + + +           +   + EI   ++    +++ L    E
Sbjct: 266 LMNRAYKEMFRIDPSDYVHRLYYEAFPY---KEVIALVEEIFMTEVN-VRKQMLLPVDIE 321

Query: 536 EKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
            K   +                +  HDI+E K+ +                + DF+A VS
Sbjct: 322 RKHFEVYGTPIIGTNDEWKGIIVVFHDITELKKLE--------------QMRKDFVANVS 367

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY-ANYIDRSGNLVLDIVNDLLDISKIES 652
           HE++TP+T+I GF+E + +   G + + + +EY    I +    +  ++ DLLD+SKIE 
Sbjct: 368 HELKTPITSIKGFAETLLD---GAMHDAQTLEYFLTIILKESERLQHLIQDLLDLSKIEQ 424

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712
               L+   V L E + E I +++  AN+K+I +  +    +  +  DL  +KQI +N++
Sbjct: 425 QGFTLNISVVDLHEVLKEVIVMLEAKANDKQITLEYTSNAPVCYMYGDLHRLKQIFINLI 484

Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           +NAI +TP+GG++ +       +E+ + V DTG+G+   E+ +  + F ++  ++     
Sbjct: 485 NNAIAYTPAGGRVTVYVE-KDEKELHVHVSDTGIGIEQKEIPRIFERFYRVDKARSRNSG 543

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           GTGLGL + K +V+A+ G   + S    GT   + F
Sbjct: 544 GTGLGLAIVKHLVEAHHGTISVKSEVGIGTTFTVHF 579


>gi|315645559|ref|ZP_07898683.1| PAS/PAC sensor hybrid histidine kinase [Paenibacillus vortex V453]
 gi|315279037|gb|EFU42347.1| PAS/PAC sensor hybrid histidine kinase [Paenibacillus vortex V453]
          Length = 639

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 114/499 (22%), Positives = 224/499 (44%), Gaps = 30/499 (6%)

Query: 319 ENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
           + L        PI    V   G+    NP+   +  Y   + +               S+
Sbjct: 10  QALFEHVYKSAPIGIALVTVEGHWISVNPAACKMFGYTEEELMAQPAS------DYVYSN 63

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
               K  +L+  D T    +        +     A   +   + ++    +       + 
Sbjct: 64  CINNKEKLLHSLDDTSSTIAVEKQFSHKDGNQIWASMHVSLVRDDKENTPLFFISQIVDI 123

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
            D+++ +++++  + +  S+ +   D I   N EG I++ N+   +L G+ + +++    
Sbjct: 124 TDSKVAEQRLQESIERYTSLKKYNHDAIISFNLEGKIINGNQMAEQLTGFKIPELIGTKI 183

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL---PFSSCY 554
           +  + +   S +     + ++++             ++   + +   +  +     +  +
Sbjct: 184 SRLIGERNLSRILSSAADYVAVEKGINGIH-----HRDGHTVEVLATLAPIVIHNQNVGF 238

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
            +   D++E K+    L   K+ AEK +  KS+FLA +SHEIRTP+  +IG +++I    
Sbjct: 239 YIIAKDMTEQKR----LIIEKEAAEKTNKAKSEFLAMMSHEIRTPMNGVIGMTDLILETE 294

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                +    +Y   I +SG  +L+I+ND+LD SKIESG+  L  E  SL  A+SE +++
Sbjct: 295 L----DEEQRDYVQIIKKSGTTLLNIINDILDFSKIESGRTELVEETFSLRIALSETMNM 350

Query: 675 VQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
           +   A EK I + TS A+ +P ++  D+  ++Q+ +N+LSNAI FTP+G  + IS    +
Sbjct: 351 ILPKALEKNIEVTTSVASEVPDQVHGDVTKLRQVLMNLLSNAIKFTPNGA-VSISVQCLN 409

Query: 734 NEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
           +E     +   V DTG+G+   ++    +PF Q+ +    + EGTGLGL + K +V    
Sbjct: 410 HEGNPPLIQFSVVDTGIGVPEEKVAHLFEPFYQVDHYMTRKVEGTGLGLAICKKLVKLMG 469

Query: 790 GKFYIFSTP-AKGTLIEII 807
           G  +        G++    
Sbjct: 470 GDIWYERNLNGSGSVFAFT 488



 Score = 44.2 bits (103), Expect = 0.092,   Method: Composition-based stats.
 Identities = 12/112 (10%), Positives = 35/112 (31%), Gaps = 3/112 (2%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL-KRQNTWYGKTTLW 150
            G+   ++    K  G    +++     D      I+    +   L    +T   +    
Sbjct: 30  EGHWISVNPAACKMFGYTEEELMAQPASDYVYSNCINNKEKLLHSLDDTSSTIAVEKQFS 89

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
             +G  ++  + ++   +         F    IV +       + L + +++
Sbjct: 90  HKDGNQIWASMHVSL--VRDDKENTPLFFISQIVDITDSKVAEQRLQESIER 139


>gi|117920460|ref|YP_869652.1| putative PAS/PAC sensor protein [Shewanella sp. ANA-3]
 gi|117612792|gb|ABK48246.1| putative PAS/PAC sensor protein [Shewanella sp. ANA-3]
          Length = 1119

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 114/510 (22%), Positives = 208/510 (40%), Gaps = 21/510 (4%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
            + +   +         ++        +   G +   NP+   L  Y   + I     + 
Sbjct: 221 DARTKALEAANIRLNTILESAVDGFVIINEFGIITDINPAVSRLFGYAHNELIGQNVSIF 280

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
              D   L D    +    + +    I  S  L   + + +                   
Sbjct: 281 MPFDQRPLHDGYIQQYFTTHVA--KIIGTSRELTAQRKDGQ---LFPIALSVSQMSIDNR 335

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
               G+  +  + +  +         L + L A+ D +  I+  G ++  N A ++LFGY
Sbjct: 336 AMFIGLVKDLSEAKRKEIAAAKTESVLLATLAASQDCLITIDMSGKVIEFNLAATRLFGY 395

Query: 488 PVEDILRKPFTVFLEQNT-PSVMNHYLTEILSLDLRQTLEK--ITLGSTKEEKLLS--LR 542
             E+ +       +            +         + L K    L   K   L+   L 
Sbjct: 396 SREEAVGALLEDLIIPEDKQQGHKRGIERYRRTGEGKMLNKRVELLARCKAGNLIPIELE 455

Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
           ++  +L     ++  + DISE K  + KL  AK+ AE+ S  KS FLA +SHEIR+PL A
Sbjct: 456 VVPIQLGDEVLFTAFLRDISERKANEQKLQQAKEQAEQGSKVKSRFLATMSHEIRSPLNA 515

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           I+G  E++ +             +AN    +G+ +L  +ND+LD SKIE+G+M L     
Sbjct: 516 ILGGVELLLDSSLSK----DQRIHANIAREAGSALLHTINDILDFSKIEAGQMVLESHEF 571

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPS 721
             D+ V++ + +++  A EK + + +    N+PR ++ D + ++Q+  N++ NAI FT S
Sbjct: 572 EPDKLVAQVLQILEPKAFEKGLELVSFVNRNVPRTVVGDQQRLRQVLHNLVDNAIKFTAS 631

Query: 722 GGQIIISTTHTSNEEVIL----RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
           G  I +      N +  +    RV D+G+G++     K  K F Q+ ++     +GTGLG
Sbjct: 632 G-TITVEMWIPDNHQTEVQLYCRVTDSGIGISAEAQSKLFKEFSQVHDTHNTNYKGTGLG 690

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           L +   ++    G   + S   +G+     
Sbjct: 691 LAICSELITMMGGTIELQSELGQGSRFTFY 720



 Score = 45.4 bits (106), Expect = 0.039,   Method: Composition-based stats.
 Identities = 39/263 (14%), Positives = 76/263 (28%), Gaps = 28/263 (10%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G + E +    +  G    + +G  L D+          H   + + + T  GK  
Sbjct: 376 IDMSGKVIEFNLAATRLFGYSREEAVGALLEDLIIPEDKQQ-GHKRGIERYRRTGEGKML 434

Query: 149 LWPIEG-----TNLYVPIDLAALPIY-SRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
              +E          +PI+L  +PI       F+ F     +             ++  +
Sbjct: 435 NKRVELLARCKAGNLIPIELEVVPIQLGDEVLFTAF-----LRDISERKANEQKLQQAKE 489

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
           +     ++K    +    +          P   +   V  L +    KD  +        
Sbjct: 490 QAEQGSKVKSRFLATMSHEIRS-------PLNAILGGVELLLDSSLSKDQRIHANIAREA 542

Query: 263 TSEES-SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
            S    ++ +  DF  I   Q         L+++  E  + ++          F++G  L
Sbjct: 543 GSALLHTINDILDFSKIEAGQMV-------LESHEFEPDKLVAQVLQILEPKAFEKGLEL 595

Query: 322 TPETVDKCPIPFFVYSHGNLFYA 344
                   P    V     L   
Sbjct: 596 VSFVNRNVPRTV-VGDQQRLRQV 617



 Score = 41.2 bits (95), Expect = 0.69,   Method: Composition-based stats.
 Identities = 44/403 (10%), Positives = 97/403 (24%), Gaps = 39/403 (9%)

Query: 93  GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP--NNHIGDLLKRQNT----WYGK 146
           G + +I+  + +  G    ++IG  +  +       P  + +I                +
Sbjct: 252 GIITDINPAVSRLFGYAHNELIGQNVS-IFMPFDQRPLHDGYIQQYFTTHVAKIIGTSRE 310

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
            T    +G     PI L+   +   NR        G+V              + +     
Sbjct: 311 LTAQRKDG--QLFPIALSVSQMSIDNR----AMFIGLVKDLSEAKRKEIAAAKTESVLLA 364

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLKTE----KY 259
                +           +               +  V +L E     +D  +      + 
Sbjct: 365 TLAASQDCLITIDMSGKVIEFNLAATRLFGYSREEAVGALLEDLIIPEDKQQGHKRGIER 424

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
              T E   L ++ +                 +     +   + +     S     ++  
Sbjct: 425 YRRTGEGKMLNKRVELLARCKAGNLIPIELEVVPIQLGDEVLFTAFLRDISERKANEQKL 484

Query: 320 NLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
               E  ++                   FL    ++    +    G   LL    LS + 
Sbjct: 485 QQAKEQAEQGSK------------VKSRFLATMSHEIRSPLNAILGGVELLLDSSLSKDQ 532

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN-------G 432
            I   +   +    +     +          + +    FE      + +          G
Sbjct: 533 RIHANIAREAGSALLHTINDILDFSKIEAGQMVLESHEFEPDKLVAQVLQILEPKAFEKG 592

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
           +E      R   R +  +  +L  +L    D        G I 
Sbjct: 593 LELVSFVNRNVPRTVVGDQQRLRQVLHNLVDNAIKFTASGTIT 635


>gi|296283542|ref|ZP_06861540.1| multi-sensor hybrid histidine kinase [Citromicrobium bathyomarinum
            JL354]
          Length = 1446

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 116/656 (17%), Positives = 236/656 (35%), Gaps = 31/656 (4%)

Query: 178  FRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP----- 232
            + G  +    R   +  A  +  +++F  L  +                           
Sbjct: 525  YIGRLVKQRTRELEETVAALEESERRFGDLAGLSPAGIFRTDAYGFCTYVNEAWLKQTGL 584

Query: 233  HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL 292
                      L   +    D +K E    + +      + + F   +             
Sbjct: 585  GASHALGAGWLDAVHPDLRDDVKREWLDAVQAGTEWRCKLQ-FLKPDDVVSWVDLIAAPR 643

Query: 293  QNNSKESFEYLSHRNHPSLSA----YFDEGENLTPETVDKCPIPFFVYSHGNLF-YANPS 347
              +  E   ++      +          E E          P   F      +  Y NP+
Sbjct: 644  IGDDGEMQGFIGVAIDITEQKLATDALKESERRFQSLASFSPAGIFRTDSAGVCNYVNPA 703

Query: 348  FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
            +  +      + +      +   D            V                  +  + 
Sbjct: 704  WCQMAGLTEAEAMGTGWSRAVHYDDLDGLLQRWAAAV------DRGEPYRGEFRWLHLDG 757

Query: 408  ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
             + + +  +   + +         G+  +  D +  ++++     QL  + E  +D +  
Sbjct: 758  -SIVWVDAVAQPEFDDDGNVRGYIGVVIDVTDRKRFEKEIAERDKQLAILAENATDAVFR 816

Query: 468  INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
            +  +G  L  + +   + G P E ++          +    M     ++ S  ++Q +  
Sbjct: 817  VELDGTCLYASPSAKDVLGVPSEHLIGTNALDGFHPDDQDRMWSLFDDLRSGRIKQIVAA 876

Query: 528  ITLGSTKEEKLLSLRIIIKKLPFSS-----CYSLTMHDISEWKQEKNKLSHAKKIAEKES 582
                STK++    L      +           S+++ DI + K+ +  L  A++ AE  +
Sbjct: 877  YRWRSTKDDDYRWLEANAGLVKDQQSDEAKEVSVSIRDIGDRKKMELDLVAARQNAETAA 936

Query: 583  SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
            + K+ FLA +SHEIRTP+  ++GF+E++      P       E A  I  SG  ++ I+N
Sbjct: 937  AAKATFLANMSHEIRTPMNGVVGFTELLLAGELSP----EQRENAQLIADSGRAMMQILN 992

Query: 643  DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADL 701
            D+LD+SKI++G+M +  EP+ L   +   + L++  A +K +        ++P R++AD 
Sbjct: 993  DILDVSKIDAGQMTIVREPIDLRHKLQSCMRLLEPTARQKGLKFELLIDEDVPSRVMADP 1052

Query: 702  RSVKQIALNILSNAIHFTPSG---GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
              ++QI  N++ NAI FT  G    ++ I       E + + V D+G+G+    L+   +
Sbjct: 1053 LRLRQILTNLVGNAIKFTAKGIVNCRVSIERGPEDQETLCIAVEDSGIGIPADRLDAIFR 1112

Query: 759  PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
             F Q   S      GTGLGL ++  +     G+  + S    G++  +  PL   +
Sbjct: 1113 EFSQADESTARIYGGTGLGLTISNELAKMMDGELLVSSELGHGSVFTLRLPLLRAN 1168



 Score =  108 bits (271), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 47/377 (12%), Positives = 93/377 (24%), Gaps = 18/377 (4%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL-HIDPNNHIGDLLKRQNTWY 144
            +  DA+G+   ++E   K  G  A   +G    D        D      D ++    W 
Sbjct: 562 IFRTDAYGFCTYVNEAWLKQTGLGASHALGAGWLDAVHPDLRDDVKREWLDAVQAGTEWR 621

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            K      +  ++   +DL A P    + E  GF G  I              K  +++F
Sbjct: 622 CKLQFLKPD--DVVSWVDLIAAPRIGDDGEMQGFIGVAI--DITEQKLATDALKESERRF 677

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSP----PPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
             L                                 +   +  +    + D     +++ 
Sbjct: 678 QSLASFSPAGIFRTDSAGVCNYVNPAWCQMAGLTEAEAMGTGWSRAVHYDDLDGLLQRWA 737

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS----HRNHPSLSAYFD 316
                      +  +  ++ +            ++      Y+       +         
Sbjct: 738 AAVDRGEPYRGEFRWLHLDGSIVWVDAVAQPEFDDDGNVRGYIGVVIDVTDRKRFEKEIA 797

Query: 317 EGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
           E +       +      F V   G   YA+PS   +    S    E   G + L      
Sbjct: 798 ERDKQLAILAENATDAVFRVELDGTCLYASPSAKDVLGVPS----EHLIGTNALDGFHPD 853

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
             +         RS R     +A       + +           K  Q  E    +    
Sbjct: 854 DQDRMWSLFDDLRSGRIKQIVAAYRWRSTKDDDYRWLEANAGLVKDQQSDEAKEVSVSIR 913

Query: 436 EDVDTRINKRKMEIEVM 452
           +  D +  +  +     
Sbjct: 914 DIGDRKKMELDLVAARQ 930



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/415 (9%), Positives = 102/415 (24%), Gaps = 19/415 (4%)

Query: 168 IYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ 227
           +    +   G  G G +   R   +   L     +      +++    +   E++ I + 
Sbjct: 280 LLDLPQTLPGISGIGFIEPVRAGEEQAFLDSLAARG---RDDLEIHPLTDRDERFVIVAI 336

Query: 228 QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287
           +    +++      +  +         +      +T     + ++ +     L +   + 
Sbjct: 337 EPLVDNIQAIGLDIAFEDNRRAAASKARDTGKATITRRILLVQDETESPGFLLLRPLYRP 396

Query: 288 Y-FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANP 346
                     + +F+   +          D   +   +  D       VY          
Sbjct: 397 GLPTDTVEERRSAFDGWIYAPFVGPRFMSDLTPSQ-GKLFD-----IAVYDGAR------ 444

Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
                  + S +      G S                V+   +         R  ++   
Sbjct: 445 PDPEELIFSSSEAPAG-DGASAFTVQRTFKVMEQTWTVVWTSTPAFERGVVTREASLVLI 503

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
               L + F     +    E      ++    +       +E    +   +   +  GI 
Sbjct: 504 GGLLLTLIFAVLLFSGSRREAYIGRLVKQRTRELEETVAALEESERRFGDLAGLSPAGIF 563

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
             +  G     N A  K  G      L   +   +  +    +     + +        +
Sbjct: 564 RTDAYGFCTYVNEAWLKQTGLGASHALGAGWLDAVHPDLRDDVKREWLDAVQAGTEWRCK 623

Query: 527 KITLGSTKEEKLLSLRI--IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579
              L        + L     I        +     DI+E K   + L  +++  +
Sbjct: 624 LQFLKPDDVVSWVDLIAAPRIGDDGEMQGFIGVAIDITEQKLATDALKESERRFQ 678


>gi|149174355|ref|ZP_01852982.1| multi-sensor hybrid histidine kinase [Planctomyces maris DSM 8797]
 gi|148846900|gb|EDL61236.1| multi-sensor hybrid histidine kinase [Planctomyces maris DSM 8797]
          Length = 1102

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 105/529 (19%), Positives = 217/529 (41%), Gaps = 21/529 (3%)

Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFL 349
           T+    +   E L   +   L+      +      +D   I  + ++        +    
Sbjct: 159 TVFALIRFVPEALKLPSTALLAQELQRSKERLDFALDAGQIGVWEWNLKTDTLLWDRRTR 218

Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
            +         E+     T        ++       L +  +T    +++   +  +  +
Sbjct: 219 QIFNIDP----EVRDLYLTDFTQCLHPEDRNEVTNQLEQCIQTRTPYNSKFRVVHSDG-S 273

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469
              +            E     G+  +  D ++ +  +    +   S  E  + GIA + 
Sbjct: 274 IRYVHAQGRAFLGNDGEPEQYIGVCHDFTDKQLQEDALAESELNFRSTFEQVAMGIAHVA 333

Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
            +G  L  N+ + ++F Y  E++L          +   ++   +  + + +++       
Sbjct: 334 LDGRWLRVNQRLCEIFDYQAEELLELRIHDLSHPDELEIVLKNMQRMQAGEIKS-YSIEK 392

Query: 530 LGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
               K+   +   +++  +   S     +   + +I   K+ + KL  AK  AE+ S  K
Sbjct: 393 RYLRKDGSSIWTNLMVSLVRHQSGEPKHFIFGIKNIQRRKETEQKLKAAKLTAEEASQTK 452

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
           S+FLA +SHE+RTPL  +IG +E+++        N    E+ +    SG  +L+++ND+L
Sbjct: 453 SEFLANMSHELRTPLNGVIGMTELLQGTHL----NQHQQEFVDACRSSGESLLNLINDIL 508

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSV 704
           D SKIE+GK++L      L+  + + +S +    NEK + +           +  D   +
Sbjct: 509 DFSKIEAGKLDLDLHEFDLENVLMDTVSTLVWRTNEKNLELPCFVDPESRLTLKGDSYRL 568

Query: 705 KQIALNILSNAIHFTPSGGQIIISTT--HTSNEEVIL--RVRDTGVGMTNYELEKAMKPF 760
           +QI +N++ NAI FT SG ++++ T      N  + +   V DTG+G++  ++ +  + F
Sbjct: 569 RQILVNLIGNAIKFTDSG-EVVVRTRTVSRENGNIRIHFSVTDTGIGISESKINRLFQSF 627

Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            Q+  S      GTGLGL +++ +V+   G+  I S    G+      P
Sbjct: 628 SQVDASTTRNYGGTGLGLVISQNLVELMGGRIGIESQDGVGSTFWFEIP 676



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 25/267 (9%), Positives = 76/267 (28%), Gaps = 12/267 (4%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN--TWYGKTTL 149
            G    +++ L +     A +++ +R+ D+S    ++        ++     ++  +   
Sbjct: 335 DGRWLRVNQRLCEIFDYQAEELLELRIHDLSHPDELEIVLKNMQRMQAGEIKSYSIEKRY 394

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
              +G++++  + ++   +  ++ E   F  FGI    +   +     K          +
Sbjct: 395 LRKDGSSIWTNLMVSL--VRHQSGEPKHFI-FGI-KNIQRRKETEQKLKAAKLTAEEASQ 450

Query: 210 IKKGHSSVEKEKYD-----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT- 263
            K    +    +       +           +        +      + L      +L  
Sbjct: 451 TKSEFLANMSHELRTPLNGVIGMTELLQGTHLNQHQQEFVDACRSSGESLLNLINDILDF 510

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
           S+  +     D H  +L           +   ++++ E     +  S      +   L  
Sbjct: 511 SKIEAGKLDLDLHEFDLENVLMDTVSTLVWRTNEKNLELPCFVDPESRLTLKGDSYRLRQ 570

Query: 324 ETVDKCPIPFFVYSHGNLFYANPSFLL 350
             V+           G +     +   
Sbjct: 571 ILVNLIGNAIKFTDSGEVVVRTRTVSR 597


>gi|288957737|ref|YP_003448078.1| two-component sensor histidine kinase [Azospirillum sp. B510]
 gi|288910045|dbj|BAI71534.1| two-component sensor histidine kinase [Azospirillum sp. B510]
          Length = 767

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 134/638 (21%), Positives = 242/638 (37%), Gaps = 36/638 (5%)

Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD 252
             A+   L K+   + E+               S  +P P   + ++    T      D 
Sbjct: 116 SPAVHDHLRKRRDAVSELADLVVIGADGIALHHSADAPLPTATLTDRAY-FTGPRDSADQ 174

Query: 253 VL--KTEKYPLLTSEESSLPEQEDFHTINLNQY--------TKKQYFGTLQNNSKESFEY 302
            L         + + +  +P    +                  +        +       
Sbjct: 175 RLFVGATISSRVMTGQRVIPFSRRWTDDQGGFRGVMVAMIDPTRLAATLESQHIDRKGGV 234

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPI-----PFFVYSHGNL-FYANPSFLLLTKYKS 356
           +      ++     + ++      +  P          +        A+    + T + +
Sbjct: 235 ILALRDGTVLLERPQAQSGAEGGAEGGPQRNGLGGLSDWPAVRAALAAHDEATIRTAFPA 294

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
                 A G+ +L+   ++ D   +    L           A L   + N      +  +
Sbjct: 295 QPASIGASGIDSLVSVRRVRDYPFVIVATL--------PVDAALREWRRNTAVWTGIGAV 346

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476
                      +    I  +      ++ ++     ++  IL++  D +   +  G I++
Sbjct: 347 MTI-----AIALLTAFIVRQHARREQDQARLARASRRIRGILDSMLDAVVTFDSNGRIIT 401

Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
            NRA   +FG P   ++ +P    +        +  LT +        +         + 
Sbjct: 402 FNRAAELMFGMPEHRMVGQPIEALIPGARGGADDRDLTALRRDGHAFPVSFTVGDLRLDG 461

Query: 537 K-----LLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
                  L   +   +          + D++  KQ++ +L  +K  AE  +  K++FLA 
Sbjct: 462 GPCTPAALPAALGGVRPDEPRICVGVIRDMTRRKQQEAELIASKTQAELANRAKTEFLAN 521

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           +SHE+RTPL AIIGF+EV+ ++ FG + N R       I  SG  +LDIVN +LD+SK+E
Sbjct: 522 MSHELRTPLNAIIGFAEVLSSEFFGTV-NERQKSCITDIHDSGRHLLDIVNAVLDMSKLE 580

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
            G+ +L  E V   EA+ + + +V+  A    I I       I  +  D R+ KQ+ LN+
Sbjct: 581 FGQFDLSEESVEAHEAIGQCLMMVRDRAAAAGIAIHNEVTAAIALLWVDRRAFKQVILNL 640

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           LSNA+ FTP GGQI +S    ++    L V DTG+G+    +    +PF Q  N+   R 
Sbjct: 641 LSNAVKFTPDGGQITVSAGLEADGGFRLTVADTGIGIPAAFMADLFQPFRQAENTANRRY 700

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           EGTGLGL ++K  +D + G     S    GT + +  P
Sbjct: 701 EGTGLGLSISKNFIDLHGGTLSCQSGLGAGTSMTVRLP 738



 Score = 46.6 bits (109), Expect = 0.019,   Method: Composition-based stats.
 Identities = 33/338 (9%), Positives = 80/338 (23%), Gaps = 29/338 (8%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN---TWYGK 146
           D++G +   +       G    +M+G  +  +        ++     L+R          
Sbjct: 394 DSNGRIITFNRAAELMFGMPEHRMVGQPIEALIPGARGGADDRDLTALRRDGHAFPVSFT 453

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRG------FGIVHVNRVDNDPRA----- 195
                ++G     P   AALP         G R        G++          A     
Sbjct: 454 VGDLRLDGG----PCTPAALPA-----ALGGVRPDEPRICVGVIRDMTRRKQQEAELIAS 504

Query: 196 ---LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD 252
                     K   L  +     +            S      +  +  S          
Sbjct: 505 KTQAELANRAKTEFLANMSHELRTPLNAIIGFAEVLSSEFFGTVNERQKSCITDIHDSGR 564

Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
            L      +L   +    + +             Q    +++ +  +   + +    +++
Sbjct: 565 HLLDIVNAVLDMSKLEFGQFDLSEESVEAHEAIGQCLMMVRDRAAAAGIAIHNEVTAAIA 624

Query: 313 AYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
             + +        ++       F    G +     + L       +   +   G+     
Sbjct: 625 LLWVDRRAFKQVILNLLSNAVKFTPDGGQITV--SAGLEADGGFRLTVADTGIGIPAAFM 682

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
           A         +     R + T +  S   + I  +   
Sbjct: 683 ADLFQPFRQAENTANRRYEGTGLGLSISKNFIDLHGGT 720


>gi|254413818|ref|ZP_05027587.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196179415|gb|EDX74410.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 1229

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 133/805 (16%), Positives = 266/805 (33%), Gaps = 53/805 (6%)

Query: 41   KENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISE 100
            +++  H      +  D +    +       E               + +D+    + ++ 
Sbjct: 289  RDDQGHPIRVIGSTIDISDRKATEATLKQRETDLRLITDAVPALIAY-VDSDCRYRFVNR 347

Query: 101  ELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVP 160
                  G+ A  +IG  + D       +  +   +          +  +   +G + YV 
Sbjct: 348  AFTTWFGHSAENLIGQSVADFVGAEVYEYMSRDIEAALAGEPINVEMWMPFKDGGSRYVR 407

Query: 161  IDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG-----HS 215
                 +P         GF  F  ++         A  +  +++FS L    +        
Sbjct: 408  RQ--YIPDIDPQGHVKGFYAF--INDITDLKQIEAALRDREQRFSTLFNGMEDWVLVYPL 463

Query: 216  SVEKEKYDIFSQQSPP----PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271
            + + +   +     P      + R +    S+ +        L+     LL  +   +  
Sbjct: 464  TADNQPGQLIEVNEPACKRLGYTRQELLTLSVADILDIPLADLQVSFQKLLQEKRVVVES 523

Query: 272  QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI 331
                                L                        + E +    +   PI
Sbjct: 524  VHRTKAGQQIPVEVSSTLFMLDGLPTVQSICRDITERKQAELALRKSETVLNAFIASSPI 583

Query: 332  PFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390
                + H     YAN +   +        +     L  ++          +  ++  R  
Sbjct: 584  GIAFFDHDLRYLYANEALATMNGVPLSQHLGRT--LWEVVPQMAPEFAPMLDQILQTRQP 641

Query: 391  RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME-- 448
            R     S  +                 F       E +       E  + +  +  +   
Sbjct: 642  RLNFEFSGEVQP-----GIYCHALANHFPVCLPDGELLGVGVTIMEISELKRVEGALRLS 696

Query: 449  -----IEVMQLCSILEATSDGIAI-INREGIILSTNRAVSKLFGYPVEDIL--------- 493
                   V +L +++E T   + I  + +   ++ NR    L   P+  +          
Sbjct: 697  EAFAHARVQELETLMEITPAALWIAHDPDCHQMTANRTAYNLMRMPLGSVTTATPVDGSY 756

Query: 494  RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-- 551
              PF  +         +  +            E   +      + +  + +         
Sbjct: 757  PLPFKQYKNGQEYIPEDLPMQRAARTGQEVIDEIEFVFEDGTVRFIYGKAVPLYHDSGEV 816

Query: 552  SCYSLTMHDISEWKQEKNKLSH-------AKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
                    DI+E KQ + +          A++ AE  +  K +FLA +SHE+R+PL  I+
Sbjct: 817  RGVIGAFVDITERKQAEREHEQLLARERAAREEAESANRIKDEFLAILSHELRSPLNPIL 876

Query: 605  GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
            G++++++ ++F P    +       I+R+  + + +V+DLLD+++I  GK+ L    V L
Sbjct: 877  GWTKLLRTRQFDPAATDKA---LATIERNATIQIQLVDDLLDVARILRGKVVLTRHRVDL 933

Query: 665  DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724
              A+  AI  VQL A  K I I+  F   +  +  D   ++Q+  N+LSNA+ FTPSGGQ
Sbjct: 934  AIAIKAAIETVQLAAEAKSIQIQPHFIGKVGLVEGDSGRLQQVVWNLLSNAVKFTPSGGQ 993

Query: 725  IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
            + ++          + V+DTG+G++   L      F Q  +S   +  G GLGL +A+ +
Sbjct: 994  VEVTLATVDE-FAQITVKDTGIGISADILPHIFDYFRQADSSMTRQFGGLGLGLAIARHL 1052

Query: 785  VDANMGKFYIFS-TPAKGTLIEIIF 808
            VD + G     S    +G    +  
Sbjct: 1053 VDLHGGIIQADSPGEGQGATFTVRL 1077



 Score =  125 bits (313), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 56/586 (9%), Positives = 158/586 (26%), Gaps = 55/586 (9%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAF--KMIGMRLCDVSDILHIDPNNH-IGDLLK-RQN 141
            +  D    +   +    + +G+             +       +       + L    +
Sbjct: 68  IYECDLEQGIISWNAPYKELLGDRPESTAYSWEWWIEHLHPDDREEVVANFQETLAGTGD 127

Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
            W  +      +G+  +  I      + ++  +    R  G +          A  ++ +
Sbjct: 128 RWGAEYRYQKTDGSYAH--ILDRGYILRNQTGK--AIRVIGTLFDATTQKQVEAELRQQE 183

Query: 202 KKFSHLHEI-KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK---------- 250
           +     +E  +    +V    YD    ++          +   +   A            
Sbjct: 184 ECLRLANERFQFAARAVNALIYDWQITRNRVERTDGLTSILGYSLSEAEPTLNWWRDRIH 243

Query: 251 ---DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK----ESFEYL 303
               + +  E    L+  +S   E    H  N   +   Q     +++           +
Sbjct: 244 PDDGERIDQETATALSQGDSYRVEYRVLHKSNHYIHILDQGLVVTRDDQGHPIRVIGSTI 303

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEI 362
              +  +  A   + E       D  P             + N +F     + + + I  
Sbjct: 304 DISDRKATEATLKQRETDLRLITDAVPALIAYVDSDCRYRFVNRAFTTWFGHSAENLIGQ 363

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
           +          ++ +  +         +      +  +     +  +   +        +
Sbjct: 364 SV---ADFVGAEVYEYMSRDIEAALAGE----PINVEMWMPFKDGGSRY-VRRQYIPDID 415

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII-----NREGIILST 477
                        +  D +  +  +     +  ++     D + +      N+ G ++  
Sbjct: 416 PQGHVKGFYAFINDITDLKQIEAALRDREQRFSTLFNGMEDWVLVYPLTADNQPGQLIEV 475

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
           N    K  GY  +++L       L+     +   +   +    +       ++  TK  +
Sbjct: 476 NEPACKRLGYTRQELLTLSVADILDIPLADLQVSFQKLLQEKRVV----VESVHRTKAGQ 531

Query: 538 LLSLRI--IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
            + + +   +  L           DI+E KQ +  L  ++ +     +     +A   H+
Sbjct: 532 QIPVEVSSTLFMLDGLPTVQSICRDITERKQAELALRKSETVLNAFIASSPIGIAFFDHD 591

Query: 596 IR-----TPLTAIIG--FSEVIKNQRFG--PLGNPRYIEYANYIDR 632
           +R       L  + G   S+ +    +   P   P +    + I +
Sbjct: 592 LRYLYANEALATMNGVPLSQHLGRTLWEVVPQMAPEFAPMLDQILQ 637



 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 56/538 (10%), Positives = 147/538 (27%), Gaps = 58/538 (10%)

Query: 186 VNRVDNDPRALGKRLDKKFSHLHE--IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL 243
             R+      L   L      ++E  +++G  S      ++   +   P     +    +
Sbjct: 47  ETRLQKTEERLSLVLRATKDAIYECDLEQGIISWNAPYKELLGDR---PESTAYSWEWWI 103

Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303
              +    + +       L         +  +   + +          L+N + ++   +
Sbjct: 104 EHLHPDDREEVVANFQETLAGTGDRWGAEYRYQKTDGSYAHILDRGYILRNQTGKAIRVI 163

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPF---------FVYS---HGNLFYANPSFLLL 351
                 +     +       E +      F          +Y      N          +
Sbjct: 164 GTLFDATTQKQVEAELRQQEECLRLANERFQFAARAVNALIYDWQITRNRVERTDGLTSI 223

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411
             Y   +           +        +      L + D    +       +  +     
Sbjct: 224 LGYSLSEAEPTLNWWRDRIHPDDGERIDQETATALSQGD----SYRVEYRVLHKSNHYIH 279

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471
            +        +     +   G   +  D +  +  ++     L  I +A    IA ++ +
Sbjct: 280 ILDQGLVVTRDDQGHPIRVIGSTIDISDRKATEATLKQRETDLRLITDAVPALIAYVDSD 339

Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
                 NRA +  FG+  E+++ +    F+       M+  +   L+    + +      
Sbjct: 340 CRYRFVNRAFTTWFGHSAENLIGQSVADFVGAEVYEYMSRDIEAALAG---EPINVEMWM 396

Query: 532 STKEEKLLSLRIIIKKLPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
             K+     +R           +       ++DI++ KQ +  L   ++      +   D
Sbjct: 397 PFKDGGSRYVRRQYIPDIDPQGHVKGFYAFINDITDLKQIEAALRDREQRFSTLFNGMED 456

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           ++         PLTA                 + +  +     + +   +     +LL +
Sbjct: 457 WVLVY------PLTA-----------------DNQPGQLIEVNEPACKRLGYTRQELLTL 493

Query: 648 SKIESGKMNLHFEPVSLDEAVSE---AISLVQLYANEKRILIRTS----FANNIPRIL 698
           S  +   + L    VS  + + E    +  V      ++I +  S      + +P + 
Sbjct: 494 SVADILDIPLADLQVSFQKLLQEKRVVVESVHRTKAGQQIPVEVSSTLFMLDGLPTVQ 551



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/250 (15%), Positives = 75/250 (30%), Gaps = 28/250 (11%)

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471
            +             N  +  +  E    +  + +++    +L  +L AT D I   + E
Sbjct: 15  VVALQQQVGELDDKVNHYEQQLAQERETRQTVETRLQKTEERLSLVLRATKDAIYECDLE 74

Query: 472 GIILSTNRAVSKLFGYPVED--ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
             I+S N    +L G   E      + +   L  +    +     E L+           
Sbjct: 75  QGIISWNAPYKELLGDRPESTAYSWEWWIEHLHPDDREEVVANFQETLA-GTGDRWGAEY 133

Query: 530 LGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
                +     +      L   +        T+ D +  KQ + +L   ++     +  +
Sbjct: 134 RYQKTDGSYAHILDRGYILRNQTGKAIRVIGTLFDATTQKQVEAELRQQEECLRLANE-R 192

Query: 586 SDFLARVSHEI------------RTP-LTAIIGF----SEVIK---NQRFGPLGNPRYIE 625
             F AR  + +            RT  LT+I+G+    +E        R  P    R  +
Sbjct: 193 FQFAARAVNALIYDWQITRNRVERTDGLTSILGYSLSEAEPTLNWWRDRIHPDDGERIDQ 252

Query: 626 YANYIDRSGN 635
                   G+
Sbjct: 253 ETATALSQGD 262


>gi|124009958|ref|ZP_01694623.1| MmoS [Microscilla marina ATCC 23134]
 gi|123984042|gb|EAY24420.1| MmoS [Microscilla marina ATCC 23134]
          Length = 670

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 128/617 (20%), Positives = 246/617 (39%), Gaps = 30/617 (4%)

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
           + + +     +  E   + + ++     +   +V        H       E + LLT  +
Sbjct: 59  MQDTRLAVLVINTEMNVLLANETYCQWWQTTPEVV-NQANLQHLWSSASREWWHLLTLIK 117

Query: 267 SSL----PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
            +       ++  H  N  Q T          N+ +S   +      +     +   +  
Sbjct: 118 HAFIKQKAFEDVLHWHNNAQETVLDVKTRFIGNNGQSTYLMLTFEDITKRFQRERTLDRL 177

Query: 323 PETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
              V        V   HG + + N SF  +T Y+ + +IE    L+  L    L+     
Sbjct: 178 SFVVKHINDFVIVTNEHGQIEWVNDSFNKVTGYE-LREIEGVP-LTKFLQQKDLNKEAIK 235

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
           +       +         L   + +               +          I     + +
Sbjct: 236 RIEAKIEKNE---IVEEELQNRRKDGLPYWN-KLTIRVMYDTAAHQKKYLSIHTNTTEYK 291

Query: 442 INKRKMEIEVMQLCS---ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
            +++ +   + +L      ++  +  I I +R G I   N A  ++  Y   ++L +  +
Sbjct: 292 AHEKYLSQLINELQHQQFAIDQAA-LITITDRNGYITHANEAFCRVSKYEEHELLGQKHS 350

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK-LPFSSC---- 553
           +      P      +   +   +            K+     + + I   L         
Sbjct: 351 LVNSGYHPRSFFKDMWGTVRKGM--LWRGEIHNRAKDGTFYWVDVTIVPFLYKDEGHDPY 408

Query: 554 -YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
            Y     DI+E K  + +L  AK  AE+ +  KS+FLA +SHEIRTPL  I+G  ++I+ 
Sbjct: 409 KYLFIRFDITERKNAEKQLIVAKDKAEEANRLKSNFLANMSHEIRTPLNGILGVVQLIEI 468

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
           +      N   + YA+ I +SG  +L+ +N +LD+S+IE+ +  + +E V++ E VS  +
Sbjct: 469 ES----DNETMLHYAHLIGQSGQRLLNTINGILDLSRIEANRAEVSWEQVNIIELVSALV 524

Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
             +++ AN + I +   F     ++L D   ++Q+  N+L NAI FT  GG + +   + 
Sbjct: 525 QSLEVLANSRNIYLNIEFNLAQKQVLIDPYLLEQVLNNLLGNAIKFTERGG-VTLRL-ND 582

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
            N  + + V DTG+G+  + L++  +PF Q     + R +G+GLGL +AK +V+   G  
Sbjct: 583 ENNCLTIEVIDTGIGIEEHFLKEIFEPFKQESTGMERRFQGSGLGLAIAKKIVELMGGDI 642

Query: 793 YIFSTPAKGTLIEIIFP 809
            + S    G+   +IFP
Sbjct: 643 KVHSKKNLGSCFTVIFP 659



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/330 (10%), Positives = 96/330 (29%), Gaps = 19/330 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147
            D +GY+   +E   +       +++G +   V+   H       +   +++   W G+ 
Sbjct: 320 TDRNGYITHANEAFCRVSKYEEHELLGQKHSLVNSGYHPRSFFKDMWGTVRKGMLWRGEI 379

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                +GT  +V + +  +P   ++     ++   I        +          K    
Sbjct: 380 HNRAKDGTFYWVDVTI--VPFLYKDEGHDPYKYLFIRFDITERKNAEKQLIVAKDKAEEA 437

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
           + +K    +    +            +++    S       +   + ++ +   L +  +
Sbjct: 438 NRLKSNFLANMSHEIRT-PLNGILGVVQLIEIESDNETMLHYAHLIGQSGQ--RLLNTIN 494

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN------- 320
            + +             ++     L +   +S E L++  +  L+  F+  +        
Sbjct: 495 GILDLSRIEANRAEVSWEQVNIIELVSALVQSLEVLANSRNIYLNIEFNLAQKQVLIDPY 554

Query: 321 LTPETVDKC--PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
           L  + ++        F    G     N     LT    ++ I+   G+            
Sbjct: 555 LLEQVLNNLLGNAIKFTERGGVTLRLNDENNCLT----IEVIDTGIGIEEHFLKEIFEPF 610

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
                 M  R   + +  +     ++    
Sbjct: 611 KQESTGMERRFQGSGLGLAIAKKIVELMGG 640



 Score = 43.1 bits (100), Expect = 0.21,   Method: Composition-based stats.
 Identities = 15/122 (12%), Positives = 40/122 (32%), Gaps = 6/122 (4%)

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
            S+++ T   + +IN E  +L  N    + +    E + +          +      +L 
Sbjct: 56  KSVMQDTRLAVLVINTEMNVLLANETYCQWWQTTPEVVNQANLQHLWSSASREWW--HLL 113

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNK 570
            ++     +      +         ++  +  +   ++       LT  DI++  Q +  
Sbjct: 114 TLIKHAFIKQKAFEDVLHWHNNAQETVLDVKTRFIGNNGQSTYLMLTFEDITKRFQRERT 173

Query: 571 LS 572
           L 
Sbjct: 174 LD 175


>gi|75906539|ref|YP_320835.1| signal transduction histidine kinase [Anabaena variabilis ATCC 29413]
 gi|75700264|gb|ABA19940.1| Signal Transduction Histidine Kinase (STHK) with CheB and CheR
            activity [Anabaena variabilis ATCC 29413]
          Length = 1399

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 116/637 (18%), Positives = 237/637 (37%), Gaps = 34/637 (5%)

Query: 191  NDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF-SQQSPPPHLRMKNKVSSLTEYYAH 249
              P    +     F+ +         V  ++        +     ++K +++S  EY   
Sbjct: 626  KAPGRAERYFLVMFAEMPTAATSMLGVAGDETRQQKQTNNAQEINQLKQELASTKEYLQS 685

Query: 250  KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
              +  +     L  + E  L   E+  + N    T K+             + L  RN  
Sbjct: 686  IIEEQQATNQDLRAANEEILSSNEELQSTNEELETAKEEIQATNEELNTINDELQRRN-- 743

Query: 310  SLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLST 368
                   +  N     +    IP  +      +    P+   +      D       ++ 
Sbjct: 744  ---IESTQVSNDLQNLLSSINIPILMLGGDLRIRRFTPTAERIYNLIPTDIGRPLSDINH 800

Query: 369  LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
             L+   L          L             +  +Q N  +   +   P+   +   +  
Sbjct: 801  NLNISDLEQQIQEVIGTLTFK----------VQEVQDNEGHWYDLRIRPYRTMDNKID-- 848

Query: 429  PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
                +  +    + +  ++        +I++   + + +++    ++  NR+  + F   
Sbjct: 849  GAVVVLVDIDALKRSAEQLRASRDYAEAIVDTMRESLVVLDLNLRVVRANRSFYETFQIQ 908

Query: 489  VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
              +  ++                 L E +  ++    +     + ++    +LR+  +K+
Sbjct: 909  PTETEQRLIFDIGNGRWNIPQLRSLLEEIPPNITPFQDIEVGHNFEQLGYKTLRLNARKM 968

Query: 549  P---FSSCYSLTMHDISEWKQEKNKL-------SHAKKIAEKESSHKSDFLARVSHEIRT 598
            P    +    L + DI++ KQ + +          A++ AE  +  K +FL+ +SHE+R 
Sbjct: 969  PQIDDTQLILLLIEDITQQKQLEAERTQLLAQEHSAREAAETANRAKDEFLSILSHELRN 1028

Query: 599  PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
            PL  I+G++ ++   +          +    I+RS      +++DLLD+S+I SG++ + 
Sbjct: 1029 PLNTILGWASLLSTHQLEA---DTVNQGLEAIERSAQAQAHLISDLLDVSRISSGRLRMD 1085

Query: 659  FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718
             +P+ L   +  AI++V+L A  K I I T        I+ D   ++Q+  N+LSNAI F
Sbjct: 1086 AQPIELIPIIEAAIAVVRLAAEAKNIHIETQLDPTQKTIVGDPIRLQQVIWNLLSNAIKF 1145

Query: 719  TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
            TP  G+I I+  +T      +++ DTG G++   L    + F Q   S+     G GLGL
Sbjct: 1146 TPVRGRIDITLEYTDF-HAQIQISDTGQGISPDFLPFIFERFRQADGSRTRSNTGLGLGL 1204

Query: 779  PLAKAMVDANMGKFYIFS-TPAKGTLIEIIFPLYDTS 814
             + + +V+ + G     S     G    I  PL  T 
Sbjct: 1205 SIVRHLVELHGGTVAAQSPGEGLGATFTIRLPLQTTE 1241


>gi|294495271|ref|YP_003541764.1| multi-sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
 gi|292666270|gb|ADE36119.1| multi-sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
          Length = 713

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 114/497 (22%), Positives = 207/497 (41%), Gaps = 19/497 (3%)

Query: 315 FDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
            D         ++K      V  +   +   NP+   +   K    +    G   L    
Sbjct: 227 LDLVPMARDRLMEKMNDGIIVVDNKERIVDINPAAKEIFSNKPEKLLGKNIG--QLFPDL 284

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
           K +                 +  +       W  E            A++    + +  +
Sbjct: 285 KSTVGKND------------LCGNVYREQEIWRNEVKNTYNIHITPLADEQGNPLGKLIL 332

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
                + +  +  +     +  +I+  T + + I   E   L  N  + ++ GY  E+I 
Sbjct: 333 LHNISELKKTEEILRESEEKYRAIVSNTHEMVYIYCGE-RFLFVNDRICEVTGYTREEID 391

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILS-LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
                  +       +   + +     D   T E   +     ++ + + I         
Sbjct: 392 SMKVLDLVHPEEKEKIRQIMQKRADCKDAPATFETCIVTKKGRKRNVEIAISNITYEGEY 451

Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
               +  DI+E K+ +N L  AK  AE     KS+F+  +SHE+RTPL +IIGFS+++  
Sbjct: 452 ASLGSARDITERKENENALIQAKMKAEVADRTKSEFMTTMSHELRTPLNSIIGFSQMLLE 511

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
                L N  +  Y + I +SG  +L ++ND+LDISK+E+GK  +  E   + +A+ +  
Sbjct: 512 VPGSELTNAHHK-YVSNILKSGKSLLHLINDILDISKVEAGKKEVEAEFFDIHKALYDVE 570

Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
            L++  A++K I I   + N    + AD+   KQ+  NIL+NA  FT   G++ + T  +
Sbjct: 571 MLIRPLASKKNIDIIVDYENANNLLYADVIMFKQVMYNILNNATKFTAEKGKVFV-TAKS 629

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
             +E  + V+D G+G+   + E   +PF QI +++  R EGTGLGL L ++ V+ + G  
Sbjct: 630 GEKETSISVKDNGIGIAEDKKEMVFEPFKQIDSAKNRRYEGTGLGLALVRSYVEMHGGNV 689

Query: 793 YIFSTPAKGTLIEIIFP 809
           ++ S   KG+      P
Sbjct: 690 WVESEEGKGSTFIFTIP 706



 Score = 43.5 bits (101), Expect = 0.15,   Method: Composition-based stats.
 Identities = 11/134 (8%), Positives = 34/134 (25%), Gaps = 8/134 (5%)

Query: 94  YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK--RQNTWYGKTTLWP 151
               +++ + +  G    ++  M++ D+      +    I       +      +T +  
Sbjct: 371 RFLFVNDRICEVTGYTREEIDSMKVLDLVHPEEKEKIRQIMQKRADCKDAPATFETCIVT 430

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
            +G    V I ++ +           +   G         +      +   K       K
Sbjct: 431 KKGRKRNVEIAISNITYEGE------YASLGSARDITERKENENALIQAKMKAEVADRTK 484

Query: 212 KGHSSVEKEKYDIF 225
               +    +    
Sbjct: 485 SEFMTTMSHELRTP 498


>gi|119469502|ref|ZP_01612406.1| putative two-component member protein [Alteromonadales bacterium
           TW-7]
 gi|119447037|gb|EAW28307.1| putative two-component member protein [Alteromonadales bacterium
           TW-7]
          Length = 1107

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 103/518 (19%), Positives = 205/518 (39%), Gaps = 23/518 (4%)

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEI 362
               +  L       E+     ++        +   G++   N S   +  ++  +    
Sbjct: 255 GMVRYKMLLEEKSADESRLNAILETAIDAIVTIDHRGHILSFNASATHIFGWQEHEV--- 311

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI-PFEKA 421
                 +L   KL+ ++     +    D            I    +            + 
Sbjct: 312 KNKNIKMLMDEKLAKHH--DEYLSNAKDVNSNKVLGVNREIFAKHKEGHLFPIRIGIGEV 369

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI--INREGIILSTNR 479
           NQ  +     G   +  + R  +R +  +  +  S++      +    ++    +L  + 
Sbjct: 370 NQPGQTPLYVGYITDLTEQRELQRSLVEKEQKYRSLINNMPGAVFRCRLDDNWSMLFISP 429

Query: 480 AVSKLFGYPVEDILRK--PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
           ++ +L GY  ++       F   + +     +   +T  +    + ++        +  K
Sbjct: 430 SILELTGYQSDEFTEHCLEFNDLILKTDQQAVIDAVTSAVKEKRQYSI--EYRIRHRNGK 487

Query: 538 LLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
           +L L         +            DI+E K+ + KL  AK IAE+ +  K  F+A +S
Sbjct: 488 VLWLLDQGSFYFNNKGEAQWIDGVFVDITERKEYEEKLEKAKLIAEEAAQAKQSFMANMS 547

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HEIRTP+ +IIGFS+++ +       N    ++   ++ +   +L ++N++LD +K+E G
Sbjct: 548 HEIRTPMNSIIGFSDLLMDTPL----NNEQQKHLVTVNNAARSLLRLLNEVLDSAKLERG 603

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNIL 712
           K+ +     SL   +   IS   L A +K +++  +   ++      D   ++QI  N++
Sbjct: 604 KLTIEAVHFSLKPVIDSIISTFWLEAKKKDLILHLTIKESVQNTYYGDPDRLRQILTNLI 663

Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
            NAI FT  G  + I+ + T N  +   V+DTG+G+    +    +PF Q   +   R  
Sbjct: 664 GNAIKFTEHGS-VTITVSTTQNGHLFFEVQDTGIGIEKDRVSAIFQPFVQADGTTTRRFG 722

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           GTGLG  ++K +V+   G   + S   KGT      PL
Sbjct: 723 GTGLGTTISKQLVELMGGTINLVSEVNKGTCFYFSLPL 760


>gi|301167704|emb|CBW27287.1| putative histidine kinase/response regulator fusion protein
           [Bacteriovorax marinus SJ]
          Length = 628

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 108/497 (21%), Positives = 200/497 (40%), Gaps = 53/497 (10%)

Query: 328 KCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIE-IAGGLSTLLDAPKLSDNNAI---- 381
                  +   +G++ Y + +F  L  Y   +  E              +          
Sbjct: 27  NASDGVHILTQNGDVVYCSTTFADLLGYSLEEAHELNVKDWDRHFPVEDMIPVIKDLIEN 86

Query: 382 ---KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
                    + +            I+ + +  L                        +  
Sbjct: 87  PKIFETKHEKKNGEIFNVEINARGIELDGDFFLY-------------------ASSRDIT 127

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
             +           +L SI   T D   +I+  G I S N  + KLFG   +++L     
Sbjct: 128 GVKKEAMVNRKNHAKLQSIFRTTPDAFFVIDSSGRIESVNDKLIKLFGLSEKELLGTNID 187

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS--L 556
            +L+ +   ++                 +    ++K+ +++ + I + +           
Sbjct: 188 KYLKVDVTKLVGE--------------TEELEFTSKDGRVVPISINVGEARTEDGLYLTG 233

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            + DISE K+ + +L  ++  A      KS FLA +SHEIRTP+  I+G + ++K+    
Sbjct: 234 IIRDISEQKKYQRELEDSRNKALAAEKAKSLFLANMSHEIRTPMNGILGMASLLKDTSLN 293

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
           PL      E  + I+  G+ +L I+ND+L  SKIESGK+++     +L ++V +  SL+ 
Sbjct: 294 PL----QEEMLSIINSCGDSLLTIINDILSFSKIESGKLSIEKVSFNLKKSVEDVTSLIA 349

Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS-N 734
             A+EK I I +   N+IP+ + +D+  +KQI  N+LSNA+ F+P   ++ +    T  N
Sbjct: 350 NIASEKGITIHSKIDNSIPQFLKSDIVRLKQIITNLLSNAVKFSPDEEKVFLDIKLTGCN 409

Query: 735 EEVI---LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
             ++     V+D G+GM+  E  +  + F Q       +  GTGLGL ++  +     GK
Sbjct: 410 GNIVKVLFSVKDNGIGMSEEEQSRLFQEFTQADEGVTRKFGGTGLGLSISSKLAKLLGGK 469

Query: 792 FYIFSTPAKGTLIEIIF 808
             + S   +G+      
Sbjct: 470 IKVESRKGEGSKFSFEL 486



 Score = 42.3 bits (98), Expect = 0.34,   Method: Composition-based stats.
 Identities = 22/160 (13%), Positives = 49/160 (30%), Gaps = 22/160 (13%)

Query: 66  NYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL 125
           N+   ++ F   P      F   ID+ G ++ ++++L K  G    +++G          
Sbjct: 139 NHAKLQSIFRTTPDAF---FV--IDSSGRIESVNDKLIKLFGLSEKELLGT--------- 184

Query: 126 HIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVH 185
           +ID    +        T   +      +G  + + I++         R   G    GI+ 
Sbjct: 185 NIDKYLKVDVTKLVGETEELE--FTSKDGRVVPISINV------GEARTEDGLYLTGIIR 236

Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF 225
                   +   +    K     + K    +    +    
Sbjct: 237 DISEQKKYQRELEDSRNKALAAEKAKSLFLANMSHEIRTP 276


>gi|71907563|ref|YP_285150.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
 gi|71847184|gb|AAZ46680.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
          Length = 1015

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 114/554 (20%), Positives = 216/554 (38%), Gaps = 32/554 (5%)

Query: 282 QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGN 340
              +          +    +         L+   D     +   +         V   G 
Sbjct: 318 LIGRAWKRREADREALLRQDAEYTAKLEQLNRQTDAAWRQSELILSSAAEGICGVDLEGR 377

Query: 341 LFYANPSFLLLTKYKSVD-------DIEIAGGLS---------TLLDAPKLSDNNAIKPV 384
           + + NP+   +  +   +       D+     +           +    +  +   +   
Sbjct: 378 VIFVNPAARKMFGWNENEGIGLNLHDLTHHHDIDGKPFHNEDCPVFKTLRDGERRHVSDG 437

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
           + +R D +       + +I+ + + + A+            E   +          +   
Sbjct: 438 LYWRKDGSSFPVEFTVSSIERDGKVTGAVNVFRDITERTRIEAELERHHRHLAELVQQRT 497

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            ++     +   ILE+++DG+  I+  GII   N A   + GY  E ++  P       +
Sbjct: 498 SELMQTEARASHILESSADGLYGIDCNGIITFINPAACAILGYGAEQVIGLPAHSLFHHS 557

Query: 505 TPS-----VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSL 556
                     +      L L  +  ++        +   + +      +  +        
Sbjct: 558 KQDGSPYSAADCPSYNALRLGQKVRVDDEVYW-HADGHAVPVMYATHPMLQNGQITGAVT 616

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
           +  D+S  +        A   AE  +  KS+FLA +SHEIRTPL  ++GF+++       
Sbjct: 617 SFIDVSVQRAAAQAREQALIAAESLAKIKSEFLANMSHEIRTPLNGVLGFAQI---GYRN 673

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
              + +  +    I  SGN +L ++ND+LD SKIE+GK+ +    V L E V  A+ L++
Sbjct: 674 AENSEKARDSFAKIQLSGNRLLGVINDILDFSKIEAGKLRIEQTEVVLSEVVEHALDLLR 733

Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
             A  K+I ++   A ++P   ++D   + Q+ LNILSNA+ FT  G  + +S       
Sbjct: 734 ERARAKQIELQVELAPDLPLTCISDPLRMGQVLLNILSNAVKFTEVGS-VTLSVNCRD-G 791

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            ++ +V DTG+GM+  ++     PF Q+  S   +  GTGLGL ++K +++   GK  I 
Sbjct: 792 MLLFKVADTGIGMSAEQIGTLFNPFHQVDASASRKFGGTGLGLAISKRILELMNGKVSID 851

Query: 796 STPAKGTLIEIIFP 809
           S P  GT +E   P
Sbjct: 852 SLPGVGTSVEFCLP 865



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 23/195 (11%), Positives = 58/195 (29%), Gaps = 16/195 (8%)

Query: 50  EQSNFTDQNQESVSNTNYLDSENTFVFDPIPR----TVRFTWNIDAHGYLKEISEELPKT 105
           ++     Q+ E  +    L+ +    +                +D  G +  ++    K 
Sbjct: 329 DREALLRQDAEYTAKLEQLNRQTDAAWRQSELILSSAAEGICGVDLEGRVIFVNPAARKM 388

Query: 106 IGNYAFKMIGMRLCDVSDILHIDPN-------NHIGDLLKRQNTWYGKTTLWPIEGTNLY 158
            G    + IG+ L D++    ID              L   +         W  +G++  
Sbjct: 389 FGWNENEGIGLNLHDLTHHHDIDGKPFHNEDCPVFKTLRDGERRHVSDGLYWRKDGSSFP 448

Query: 159 VPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVE 218
           V   ++++    R+ + +G     +           A  +R  +  + L + +       
Sbjct: 449 VEFTVSSI---ERDGKVTGA--VNVFRDITERTRIEAELERHHRHLAELVQQRTSELMQT 503

Query: 219 KEKYDIFSQQSPPPH 233
           + +     + S    
Sbjct: 504 EARASHILESSADGL 518



 Score = 47.3 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 36/100 (36%), Gaps = 10/100 (10%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD------LLKR 139
            + ID +G +  I+      +G  A ++IG+    +      D + +          L+ 
Sbjct: 518 LYGIDCNGIITFINPAACAILGYGAEQVIGLPAHSLFHHSKQDGSPYSAADCPSYNALRL 577

Query: 140 QNTWY-GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGF 178
                      W  +G    VP+  A  P+  +N + +G 
Sbjct: 578 GQKVRVDDEVYWHADGHA--VPVMYATHPML-QNGQITGA 614


>gi|332521563|ref|ZP_08398017.1| PAS sensor protein [Lacinutrix algicola 5H-3-7-4]
 gi|332042962|gb|EGI79161.1| PAS sensor protein [Lacinutrix algicola 5H-3-7-4]
          Length = 1514

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 123/758 (16%), Positives = 269/758 (35%), Gaps = 48/758 (6%)

Query: 86   TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
             +  DA+GY   ++E   +  G    + +G    D       +      +   + ++   
Sbjct: 768  IFQTDANGYCNYVNERWIEYAGIDYNEAMGYGWADAIHPDDRERITIEWEAYMKSSSKEL 827

Query: 146  KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
            +T+            + +  +  +      +G+ G  +                 +K F 
Sbjct: 828  ETSFRFKHKNGKITWVSVKTVGTFDSKNNINGYIGMAL--DVTDRKIAEEKLINSEKLFR 885

Query: 206  HLHEIKKGHSSVEKEKYDIFSQQS-----PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
             L                     +                      +    D +      
Sbjct: 886  ELTSNAPVGIFKMDLDGTCNYVNATWVKYADMSYNDAMGFGWTQAIHPEDRDRVLQSWMK 945

Query: 261  LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE- 319
               S + +      F                  N + + + Y+      +     ++ E 
Sbjct: 946  -AVSLKKNYYVDLRFKNKKGKITWLSVSAVRTFNANNKLYGYIGVALDVTTKKNNEKLEI 1004

Query: 320  ---NLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
                     ++    P FV      L   N +   L        +             K+
Sbjct: 1005 KHKQYLNNIINNIGDPVFVKDENSKLILVNNALCSLFNLPREQILGKT-------LTEKV 1057

Query: 376  SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
                  + + + +        +    T+  N +    ++       +   + +   G+  
Sbjct: 1058 PYEERERFLEIDKQVLATGVENVNEETVSLNNQIIRTLSVKKTRYIDVSNKKLL-IGVIR 1116

Query: 436  EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
            +  + + ++ K++    +   + ++++ G +IIN + I +  N A++ +     E ++  
Sbjct: 1117 DITERKKDEIKIKESQEKFLKVFQSSAIGYSIINMDQIRIDVNEALAGMLETTREHLIGN 1176

Query: 496  PFTV----FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
                     ++       +    ++++       +      + ++  L + +   ++   
Sbjct: 1177 KLEDPTVEIIDAKYYEQKDKLFKKMMTQGFLSNEKLTRTLVSGKKISLLVSVEAIEIGGE 1236

Query: 552  SCYSLTMHDISEWKQEKNKLSHAK------------------KIAEKESSHKSDFLARVS 593
                  + D +E ++ + +L   +                  + A+     KS FLA +S
Sbjct: 1237 PHALFAVIDNTEKQKSELELEIYRNKLEDLVELRTLELEKEKEKAQSADLMKSAFLATMS 1296

Query: 594  HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
            HE+RTP+ +IIGF+ ++  Q  GPL N    +    +  SG  +L ++ND+LD+SKIE+G
Sbjct: 1297 HELRTPMNSIIGFTGILLKQLAGPL-NDEQKKQLTMVKSSGESLLSLINDILDVSKIEAG 1355

Query: 654  KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713
            K+N+ +      E + + I+ +   A +K + I+T  +N    I +D R V+QI LN++S
Sbjct: 1356 KLNVAYSAFKYLEILEKTIAFLTPQAEKKGLKIKTEISNFDIVIESDERRVEQILLNLIS 1415

Query: 714  NAIHFTPSGGQIIISTTHTSNEEVILR-VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
            NAI F+  G   IIS         ++  + D G+G+    ++   +PF Q+      R E
Sbjct: 1416 NAIKFSNKG---IISIKVKLEGNFVITKIIDQGIGIEAKHIKTLFEPFVQLEAGLSRRHE 1472

Query: 773  GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            GTGLGL ++K++V+   G+  + S   +G+      PL
Sbjct: 1473 GTGLGLSISKSLVEKLGGEILVKSQLGEGSTFTFKLPL 1510



 Score =  145 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 59/505 (11%), Positives = 142/505 (28%), Gaps = 25/505 (4%)

Query: 86   TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP--NNHIGDLLKRQNTW 143
             +  +  G    +++   K  G    + +G    D       D   +     L  +++  
Sbjct: 642  MFKTNKEGECIFVNDGWIKYSGLTYQQSLGYGWTDSIHPDDKDRILSGWHQALKNKEDYL 701

Query: 144  YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                 +   +     +     +  ++  N++F G+ G  I               + +  
Sbjct: 702  TDLRFVNKKD---EILWFTSKSAALFDDNKQFQGYVGLLI--DITERKAAEEKLIKSEHL 756

Query: 204  FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL-----TEYYAHKDDVLKTEK 258
            F  L                              +   ++        +    + +  E 
Sbjct: 757  FKRLTSKAPAGIFQTDANGYCNYVNERWIEYAGIDYNEAMGYGWADAIHPDDRERITIEW 816

Query: 259  YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE- 317
               + S    L     F   N              ++      Y+      +     +E 
Sbjct: 817  EAYMKSSSKELETSFRFKHKNGKITWVSVKTVGTFDSKNNINGYIGMALDVTDRKIAEEK 876

Query: 318  ---GENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
                E L  E     P+  F +   G   Y N +++        D +   G    +    
Sbjct: 877  LINSEKLFRELTSNAPVGIFKMDLDGTCNYVNATWVKYADMSYNDAM-GFGWTQAIHPED 935

Query: 374  KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
                +  ++  M   S +       R    +        ++       N   +     G+
Sbjct: 936  ---RDRVLQSWMKAVSLKKNYYVDLRFKNKK---GKITWLSVSAVRTFNANNKLYGYIGV 989

Query: 434  EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
              +    + N++        L +I+    D + + +    ++  N A+  LF  P E IL
Sbjct: 990  ALDVTTKKNNEKLEIKHKQYLNNIINNIGDPVFVKDENSKLILVNNALCSLFNLPREQIL 1049

Query: 494  RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII-IKKLPFSS 552
             K  T  +             ++L+  +    E+    + +  + LS++      +    
Sbjct: 1050 GKTLTEKVPYEERERFLEIDKQVLATGVENVNEETVSLNNQIIRTLSVKKTRYIDVSNKK 1109

Query: 553  CYSLTMHDISEWKQEKNKLSHAKKI 577
                 + DI+E K+++ K+  +++ 
Sbjct: 1110 LLIGVIRDITERKKDEIKIKESQEK 1134



 Score =  114 bits (286), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 54/505 (10%), Positives = 141/505 (27%), Gaps = 25/505 (4%)

Query: 93  GYLKEISEELPKTIGNYAFKMIGMRLCDVSD-ILHIDPNNHIGDLLKRQNTWYGKTTLWP 151
           G    ++ +    +G    +++   + D      +    N     ++++  WYG+     
Sbjct: 394 GEPIYLNTKGRALVGLEKDEVLPNSISDFFPKEYNKVIENEHMPAIEKEGKWYGEANFKN 453

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
            + TN  +PI+++   I     +     G  +    +   +  +  K + +K      I 
Sbjct: 454 FK-TNNLLPIEMSGFAIKDSKTQQPIALGV-VASNIKKRKESESKIKNIQQKLQAAVRIG 511

Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKN----KVSSLTEYYAHKDDVLKTEKY-PLLTSEE 266
                      D          +   +              H DD    E+      + +
Sbjct: 512 NIGYWSWDIVKDEVFWSDILYEIYDVDINKKLNYETVLSRVHPDDKAFHEEITKNRINNK 571

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
           S+ P +      +            + N   ++  +       +     +E    +    
Sbjct: 572 STEPFEYKVLRQDNTIRYVMVQMEVIVNEMNKAIMFQGTVIDITERKAAEEKLRDSELLF 631

Query: 327 DKC----PIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
                  P+  F     G   + N  ++  +       +   G   ++    K    +  
Sbjct: 632 RGLTHGAPVAMFKTNKEGECIFVNDGWIKYSGLTYQQSL-GYGWTDSIHPDDKDRILSGW 690

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
              +  + D         L  +    E  L  T       +   +     G+  +  + +
Sbjct: 691 HQALKNKED-----YLTDLRFVNKKDE-ILWFTSKSAALFDDNKQFQGYVGLLIDITERK 744

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
             + K+         +      GI   +  G     N    +  G    + +   +   +
Sbjct: 745 AAEEKLIKSEHLFKRLTSKAPAGIFQTDANGYCNYVNERWIEYAGIDYNEAMGYGWADAI 804

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLT 557
             +    +       +    ++ LE       K  K+  + +       S    + Y   
Sbjct: 805 HPDDRERITIEWEAYMKSSSKE-LETSFRFKHKNGKITWVSVKTVGTFDSKNNINGYIGM 863

Query: 558 MHDISEWKQEKNKLSHAKKIAEKES 582
             D+++ K  + KL +++K+  + +
Sbjct: 864 ALDVTDRKIAEEKLINSEKLFRELT 888



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 44/143 (30%), Gaps = 11/143 (7%)

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
             QL S L + SDG   ++        N    +  G   E ++ K       +   S   
Sbjct: 260 ETQLISTLNSISDGFVSLDSNWCYTYLNDKAVEYIGRSRESLIGKNMWEEFPEGVGSNFY 319

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570
               +  S    Q  E    G  K          I     S+  ++   DI+E K++  +
Sbjct: 320 KTYKKAFSTQETQYFEDYYQGLDK-----WFENRIYP--SSNGLAIYFTDITEKKKQDKQ 372

Query: 571 LSHAKKIAEKESSHKSDFLARVS 593
                ++         +F+   S
Sbjct: 373 ----NQMLLSLVETSDEFIGLAS 391


>gi|323702132|ref|ZP_08113799.1| multi-sensor signal transduction histidine kinase [Desulfotomaculum
           nigrificans DSM 574]
 gi|323532819|gb|EGB22691.1| multi-sensor signal transduction histidine kinase [Desulfotomaculum
           nigrificans DSM 574]
          Length = 453

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 85/365 (23%), Positives = 171/365 (46%), Gaps = 26/365 (7%)

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
            E  +  +IL + +DG+  +++   ++  N AV  +FG    + L       +     + 
Sbjct: 110 EERNRAQAILNSMADGVIALDKYRRVILLNPAVKDVFGLKENEGLGMDLIKVI----RNY 165

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQ 566
               L      + +  +       T E +   + +   K            + DI+E ++
Sbjct: 166 ELDDLFSQALHNQKTIVSNELQILTPEPRFFRVHVSPLKGINGEIIGVVGLLRDITERRK 225

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR-YIE 625
            +                +++F+A VSHE+RTPLT+I GF E + +   G + +P+    
Sbjct: 226 LE--------------RMRTEFVANVSHELRTPLTSINGFLETLLD---GAIEDPKTARH 268

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           +   ++     + ++++DLL +S++E  K  L+ +PV L + ++  I + +  A EK I 
Sbjct: 269 FLEIMNAETKRLANLIDDLLQLSRLEDRKTVLNKQPVDLRDVINGTIQMFKARAEEKGIK 328

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           + T   + +P++  D   + Q+ +N++ NAI +TP+ GQ+ +       E+V + V DTG
Sbjct: 329 LFTVLPDKLPQVPGDHGLLTQVMVNLIDNAIKYTPAFGQVKVGVNLN-REKVRVYVADTG 387

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+   +L +  + F ++  ++     GTGLGL + K +V+ + G+  + S P  G+   
Sbjct: 388 IGIPQEDLPRIFERFYRVDKARSRVMGGTGLGLAICKHIVEVHGGQIEVESGPG-GSTFS 446

Query: 806 IIFPL 810
              PL
Sbjct: 447 FTLPL 451



 Score = 42.7 bits (99), Expect = 0.23,   Method: Composition-based stats.
 Identities = 23/161 (14%), Positives = 44/161 (27%), Gaps = 7/161 (4%)

Query: 94  YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIE 153
            +  ++  +    G    + +GM L  V     +D  +     L  Q T           
Sbjct: 134 RVILLNPAVKDVFGLKENEGLGMDLIKVIRNYELD--DLFSQALHNQKTIVSNELQIL-- 189

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
            T       +   P+   N E  G    G++           +        SH       
Sbjct: 190 -TPEPRFFRVHVSPLKGINGEIIGV--VGLLRDITERRKLERMRTEFVANVSHELRTPLT 246

Query: 214 HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254
             +   E     + + P         +++ T+  A+  D L
Sbjct: 247 SINGFLETLLDGAIEDPKTARHFLEIMNAETKRLANLIDDL 287


>gi|17231589|ref|NP_488137.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17133232|dbj|BAB75796.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 965

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 127/674 (18%), Positives = 242/674 (35%), Gaps = 64/674 (9%)

Query: 191 NDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL-----RMKNKVSSLTE 245
              +A  ++ + +++ L E+            +          +     +       L  
Sbjct: 138 AQTKAALQQSEHRYATLAEVVPVAIFRLDADGNCIYVNDRWSQITGEPIQAALGRGCLDT 197

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
            +    D L  +   +LT E+     +  F   +              + +  +  Y+  
Sbjct: 198 IHPEDSDRLFHQWTEVLTQEKMYC-YEGKFLRKDGTTIWFYMQILPETDQNVTTIGYVGT 256

Query: 306 RNHPSLSAYF------------DEGENLTPETVDKCPIPFFVYSHGNLFY--------AN 345
               S                  E E    +  ++  +       G   +         +
Sbjct: 257 LTDISEQQAALDDGLRPTIGDLIEAEAKLRKISERLTLAISSGRFGIWEFDCVQEKVIWD 316

Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405
                L      +D             P   D   +    +   ++      A    IQ 
Sbjct: 317 ERMYELYGVHP-EDFPGNFDAWLSFVHPDDQDYLLVTIQQVLHQNQE---YDAEFQIIQP 372

Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465
           + E    +        ++  + +   GI  +  + +  ++++         I   ++D +
Sbjct: 373 SGE-IRVIKAYGVLNCDEQGKPILMVGINIDITERKQAEQELIHNRDLREVIFNESADAL 431

Query: 466 AIINREGIILS-TNRAVSKLFGYP-VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
            +++   ++    NR   +LF      ++L         +   S     +   +      
Sbjct: 432 FLVDPVTLLTLDCNRRTVELFEATNKGELLGIEGRTLQRRPFTSNEIDTIVTQMQTKGFW 491

Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH--DISEWKQEKNKLSHAKKIAEKE 581
           + E   +      KL    I  K +  +      +   DI+E KQ + KL    +   K 
Sbjct: 492 SQEIEYVTLK--GKLFWGNIAAKPITIAGRTLNLVRVTDINERKQAEEKLLRTNEQLAKA 549

Query: 582 S-------SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
           +         K +FLA +SHE+RTPL AI+G SE      FG + N +  +    I RSG
Sbjct: 550 NAELARATRLKDEFLANMSHELRTPLNAILGMSEGFIEGVFGAI-NQKQAKAIATIKRSG 608

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
             +L+++ND+LD+SKIESGK+ L    VS+      +++ +Q  A +K I + T   +N+
Sbjct: 609 KHLLELINDILDLSKIESGKLELQISDVSVRSICDGSLTFIQQMALKKNICLSTHIGSNL 668

Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE------------------- 735
             I  D R ++Q+ +N+LSNA+ FTP GG + ++                          
Sbjct: 669 DTIQVDDRRLRQVLINLLSNAVKFTPEGGNVKLTVWLEEVGTNETLGAEKLISQSSIPSP 728

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            +  RV DTG+G+ + ++ K  +PF Q+ +S      GTGLGL L K +   + G   + 
Sbjct: 729 HICFRVTDTGIGIASEDISKLFQPFTQLDSSLNRNYTGTGLGLALVKRITTLHGGTILVN 788

Query: 796 STPAKGTLIEIIFP 809
           S   +G+   +  P
Sbjct: 789 SEVGQGSCFTVRIP 802



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 52/153 (33%), Gaps = 6/153 (3%)

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
                K  ++    +  ++ E     I  ++ +G  +  N   S++ G P++  L +   
Sbjct: 136 QLAQTKAALQQSEHRYATLAEVVPVAIFRLDADGNCIYVNDRWSQITGEPIQAALGRGCL 195

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CY 554
             +       + H  TE+L+ +     E   L   K+   +   + I      +     Y
Sbjct: 196 DTIHPEDSDRLFHQWTEVLTQEKMYCYEGKFL--RKDGTTIWFYMQILPETDQNVTTIGY 253

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
             T+ DISE +   +           E+  K  
Sbjct: 254 VGTLTDISEQQAALDDGLRPTIGDLIEAEAKLR 286



 Score = 74.7 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 46/443 (10%), Positives = 118/443 (26%), Gaps = 58/443 (13%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQNTWY 144
            + +DA G    +++   +  G      +G    D       D   H   ++L ++  + 
Sbjct: 162 IFRLDADGNCIYVNDRWSQITGEPIQAALGRGCLDTIHPEDSDRLFHQWTEVLTQEKMYC 221

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR----- 199
            +      +GT   +   +  LP   +N    G+   G +            G R     
Sbjct: 222 YEGKFLRKDGTT--IWFYMQILPETDQNVTTIGY--VGTLTDISEQQAALDDGLRPTIGD 277

Query: 200 -----------LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP------PHLRMKNKVSS 242
                       ++    +   + G    +  +  +   +         P     N  + 
Sbjct: 278 LIEAEAKLRKISERLTLAISSGRFGIWEFDCVQEKVIWDERMYELYGVHPEDFPGNFDAW 337

Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302
           L+  +    D L      +L   +    E +     +      K Y     +   +    
Sbjct: 338 LSFVHPDDQDYLLVTIQQVLHQNQEYDAEFQIIQ-PSGEIRVIKAYGVLNCDEQGKPILM 396

Query: 303 LSHRNHPSLSAYFDEG----ENLTPETVDKCPIPFFVYSHGNL--FYANPSFLLLTKYKS 356
           +      +     ++      +L     ++     F+     L     N   + L +  +
Sbjct: 397 VGINIDITERKQAEQELIHNRDLREVIFNESADALFLVDPVTLLTLDCNRRTVELFEATN 456

Query: 357 VDDIEIAGGLS-----------TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405
             ++    G +             +     +     + +            +     I  
Sbjct: 457 KGELLGIEGRTLQRRPFTSNEIDTIVTQMQTKGFWSQEIEYVTLKGKLFWGNIAAKPITI 516

Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR-KMEIE-----VMQLCSILE 459
                  +      +  Q  E + +   +    +  + +  +++ E       +L + L 
Sbjct: 517 AGRTLNLVRVTDINERKQAEEKLLRTNEQLAKANAELARATRLKDEFLANMSHELRTPLN 576

Query: 460 A---TSDGIAIINREGIILSTNR 479
           A    S+G      EG+  + N+
Sbjct: 577 AILGMSEGFI----EGVFGAINQ 595


>gi|257059172|ref|YP_003137060.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8802]
 gi|256589338|gb|ACV00225.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8802]
          Length = 1090

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 132/798 (16%), Positives = 269/798 (33%), Gaps = 96/798 (12%)

Query: 96  KEISEELPKTIGNYAFKMIGM--RLCDVSDILHIDPN-NHIGDLLKRQNTWYGKTTLWPI 152
             IS    + +G    ++         +     ++     + + L+ Q   Y        
Sbjct: 58  LFISPRWKEMLGYQDQELPNRFDTWKQLLHPQDVERVMEAVQNHLEGQTNHYQIEFRLRC 117

Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH---E 209
           +  N    I      +++   +    R  G         + + L + L      L    +
Sbjct: 118 QDGNYK-WILSKGKALWNSAGK--AIRMVGSHSDISDRKEEQILLRSLIDSIPDLIFCKD 174

Query: 210 IKKGHSSVEKEKYDIFS-QQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
            +  +                        +        +  ++D +  EK     +EE  
Sbjct: 175 AQGVYKICNNAFEAFVGKPSQEIVGKTDFDLFPPEEALFFRENDRIMREKKRPHRNEEWI 234

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
                    ++  +       G L      S +    +   +      + ++L      +
Sbjct: 235 TYPDGSRRLLDTLKTPFCCSEGKLMGVIGISRDITDRKQKENTVKKQAKRDSLLSSIARQ 294

Query: 329 C-------PIPFFVYSHGNLFYANPSF-------LLLTKYKSVDDIEIAGGLSTLLDAPK 374
                    + F + + G+    +  +         L                  L   +
Sbjct: 295 LIDQDFNTAVNFTLEALGHFTDGDRGYIIRYSPQQRLWNMTHEWCNYQVPST---LQQSQ 351

Query: 375 LSDNNAIKPVMLYRSDRTCI--------AASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
                 +        +   I           A    + +    +  +  +P   A Q   
Sbjct: 352 NIPVEYLPWFSRQLLNGQPICVNSLDDLPPQAIAERVVFKNSLNPTLVVVPMVTAGQTVG 411

Query: 427 NMPQNGIEPED-------------------VDTRINKRKMEIEVMQLCSILEATSDGIAI 467
            +  +    +                          +   +    +   IL+  ++ I  
Sbjct: 412 YLGFDANSSKIWTQEEVNLLKLVGEFIAIAQARSQAEDDRKESEARFAGILDNANEAIIS 471

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI---LSLDLRQT 524
           I+ +  I   N A  K FGY   ++L +PF   +          Y+ +    L    +  
Sbjct: 472 IDEQQQITLFNHAAEKTFGYQAVNVLGQPFNQLIPPRFQDSHYQYVEDFSTCLETSRQMV 531

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEKES 582
             +   G  ++       + I K+       ++  + DI+E +Q +  L  AK+ A+  +
Sbjct: 532 GRRPVFGRRQDGSEFLAEVSISKIQLKGRKLFTAIVRDITERQQAEEALKQAKEAADAAN 591

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
             KS+FLA +SHE+RTPL AI+GF++V++  R     NP + +  + I RSG  +L+++N
Sbjct: 592 RAKSEFLASMSHELRTPLNAILGFTQVMRRDR---TLNPEHQQNLSIISRSGEHLLELIN 648

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADL 701
           D+L++SKIE+G+   H     L   +    +++ L A EK + +       +P+ +  D 
Sbjct: 649 DILEMSKIEAGRTTFHSNSFDLYRLLDNLEAMLHLKAQEKGLQLIFERTPEVPQYLETDE 708

Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHT----------------------------- 732
             ++Q+ +N+L NAI FT  GG + +                                  
Sbjct: 709 GKLRQVLINLLGNAIKFTEEGG-VTLRVKSEVRSRKGGFRESATLRTIDLEKPALTPIIA 767

Query: 733 SNEEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
            +E++++   V D+G G+   E+++    FGQ    +Q + EGTGLGLP+++  V    G
Sbjct: 768 DSEQIVITFEVEDSGPGIAPEEVDQLFAAFGQTETGRQAQ-EGTGLGLPISRKFVQLMGG 826

Query: 791 KFYIFSTPAKGTLIEIIF 808
              + S   +G+L     
Sbjct: 827 NISVSSILGQGSLFAFSI 844



 Score =  101 bits (251), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 37/316 (11%), Positives = 83/316 (26%), Gaps = 19/316 (6%)

Query: 286 KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYA 344
           +Q    LQ                       E +      +       + ++      + 
Sbjct: 3   EQIIKQLQQEIATLKAVQQATLKIQQE--LQESQERWQLIIQATNEGIWDWNLRTNELFI 60

Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
           +P +  +  Y+  + +         L  P+  D   +   +    +            ++
Sbjct: 61  SPRWKEMLGYQDQE-LPNRFDTWKQLLHPQ--DVERVMEAVQNHLEGQTNHYQIE-FRLR 116

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
               N   +        N   + +   G   +  D +        E + L S++++  D 
Sbjct: 117 CQDGNYKWILSKGKALWNSAGKAIRMVGSHSDISDRK-------EEQILLRSLIDSIPDL 169

Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
           I   + +G+    N A     G P ++I+ K                    +        
Sbjct: 170 IFCKDAQGVYKICNNAFEAFVGKPSQEIVGKTDFDLFPPEEALFFRENDRIMREKKRPHR 229

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKES 582
            E+         +LL                      DI++ KQ++N +    K     S
Sbjct: 230 NEEWITYPDGSRRLLDTLKTPFCCSEGKLMGVIGISRDITDRKQKENTVKKQAKRDSLLS 289

Query: 583 SHKSDFLARVSHEIRT 598
           S     + +   +  T
Sbjct: 290 SIARQLIDQ---DFNT 302



 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/365 (10%), Positives = 92/365 (25%), Gaps = 35/365 (9%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN----NHIGDLLKR-QNTW 143
           ID    +   +    KT G  A  ++G     +      D +          L+  +   
Sbjct: 472 IDEQQQITLFNHAAEKTFGYQAVNVLGQPFNQLIPPRFQDSHYQYVEDFSTCLETSRQMV 531

Query: 144 YGKTTL-WPIEGTNLYVPIDLAALPIYSRNREFSGFRGF-GIVHVNRVDNDPRALGKRLD 201
             +       +G+     + ++ +       +  G + F  IV             K+  
Sbjct: 532 GRRPVFGRRQDGSEFLAEVSISKI-------QLKGRKLFTAIVRDITERQQAEEALKQAK 584

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
           +     +  K    +    +       +     ++  +  +L   +     ++      L
Sbjct: 585 EAADAANRAKSEFLASMSHELRT-PLNAILGFTQVMRRDRTLNPEHQQNLSIISRSGEHL 643

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
           L      + +  +   I   + T       L          L  +          E    
Sbjct: 644 L----ELINDILEMSKIEAGRTTFHSNSFDLYRLLDNLEAMLHLKAQEKGLQLIFERTPE 699

Query: 322 TPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
            P+ ++           G L       + L            GG++  + +   S     
Sbjct: 700 VPQYLET--------DEGKLRQV---LINLLGNAIK--FTEEGGVTLRVKSEVRSRKGGF 746

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
           +     R+      A   L  I  + E  +    +        PE + Q        +T 
Sbjct: 747 RESATLRTIDLEKPA---LTPIIADSEQIVITFEVEDSGPGIAPEEVDQLFAAFGQTETG 803

Query: 442 INKRK 446
              ++
Sbjct: 804 RQAQE 808


>gi|307943987|ref|ZP_07659329.1| multi-sensor hybrid histidine kinase [Roseibium sp. TrichSKD4]
 gi|307772828|gb|EFO32047.1| multi-sensor hybrid histidine kinase [Roseibium sp. TrichSKD4]
          Length = 1168

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 120/653 (18%), Positives = 245/653 (37%), Gaps = 31/653 (4%)

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKN--- 238
             N+         ++ + + S + E             D+ S          L+ ++   
Sbjct: 253 RKNKALQAATQRAEQGEAQVSAILENMLDGVLTLNPSGDVLSINPAAQEMFGLQDEDSLE 312

Query: 239 --KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS 296
             +V  +    A     L  ++   + +   S  ++ +     L+           +   
Sbjct: 313 NIEVFKVLPAIAQLIKPLSMDEVGRIRAGSDSSSKRLETSARRLDGQHFPSELSLTRTRL 372

Query: 297 KESFEYLSHRNHPS----LSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLL 351
                + +     +     +      E    + ++  P  F +Y     L   N  +   
Sbjct: 373 GGVETFTAIVRDLTDQKKAAEELRRAETRLVDAIESLPDGFVLYDKDDRLVVCNSKYKEF 432

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411
                  D+   G      +       +  +      +    I      H          
Sbjct: 433 YHLS--ADLSEPG---NRFEDIIREGAHRGQYQFDAGTVDDRIEQRLEQHRNPGEPMEQF 487

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471
                               G   +  + +  ++++      L +++ A+ DG+ ++N E
Sbjct: 488 LADGRWLRVFEARTSEGGLVGFCVDITELKHREQELLRSQGLLQNVVSASFDGVIVMNAE 547

Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT-PSVMNHYLTEILSLDLRQTL--EKI 528
           G++L  N A   +FG+  ++I+ +  + F+            L+  L+      +     
Sbjct: 548 GVVLDFNPAAEDVFGWTSDEIVGERLSDFIIPEHLREAHEAGLSHYLATGEGPVIGKRIE 607

Query: 529 TLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
             G  K+  +L + + I++    +   +   + DI+E K     L  AK+ AE  +  K+
Sbjct: 608 IQGLHKQGHILEVELAIRQTTSDTGPLFLGYVRDITERKAADEALRDAKERAEAANEAKA 667

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
            FLA +SHEIRTP+  ++G   ++++       NP    Y      SG  +L+++ND+LD
Sbjct: 668 KFLAMMSHEIRTPMNGVLGILSLLRDTNL----NPAQEIYVKTARESGRSLLELINDILD 723

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVK 705
            SK+E+ ++ L   P +L  AV   + L    A EK + +   F +++PR ++ D   ++
Sbjct: 724 FSKLEASRVELDQAPFNLRTAVKSVVDLFTPIAQEKALELNWRFPSDLPRNVVGDAGRLR 783

Query: 706 QIALNILSNAIHFTPSGG-QIIISTTHTSNEE--VILRVRDTGVGMTNYELEKAMKPFGQ 762
           Q+ LN +SNAI FT  G  ++ +    +  ++      V+DTG+G+   + +     F  
Sbjct: 784 QVLLNFVSNAIKFTELGSVEVNVGLEKSDPQKPVFRFSVKDTGIGIPAEKHDALFGDFVT 843

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
           +  +   R  GTGLGL ++K + D   G+  + S P  G+      PL  +  
Sbjct: 844 VDGASTKRYGGTGLGLAISKQIADLMEGEITLESLPGAGSTFHFFVPLTLSEE 896



 Score = 80.8 bits (198), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 34/417 (8%), Positives = 95/417 (22%), Gaps = 30/417 (7%)

Query: 51  QSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYA 110
            +    +N+   + T   +     V   +   +     ++  G +  I+    +  G   
Sbjct: 248 AAEEQRKNKALQAATQRAEQGEAQVSAILENMLDGVLTLNPSGDVLSINPAAQEMFGLQD 307

Query: 111 FKMIG-----MRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAA 165
              +        L  ++ ++     + +G +    ++   +           + P +L+ 
Sbjct: 308 EDSLENIEVFKVLPAIAQLIKPLSMDEVGRIRAGSDSSSKRLETSARRLDGQHFPSELSL 367

Query: 166 LPIYSRNREFSGFRGF-GIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDI 224
                      G   F  IV             +R + +     E       +  +   +
Sbjct: 368 TRTR-----LGGVETFTAIVRDLTDQKKAAEELRRAETRLVDAIESLPDGFVLYDKDDRL 422

Query: 225 ------------FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ 272
                        S     P  R ++ +     +         T    +    E      
Sbjct: 423 VVCNSKYKEFYHLSADLSEPGNRFED-IIREGAHRGQYQFDAGTVDDRIEQRLEQHRNPG 481

Query: 273 EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP 332
           E       +    +  F    +        +               + L    V      
Sbjct: 482 EPMEQFLADGRWLR-VFEARTSEGGLVGFCVDITELKHREQELLRSQGLLQNVVSASFDG 540

Query: 333 FFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR 391
             V  + G +   NP+   +  + S + +        ++       + A     L   + 
Sbjct: 541 VIVMNAEGVVLDFNPAAEDVFGWTSDEIVGERLS-DFIIPEHLREAHEAGLSHYLATGEG 599

Query: 392 TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
             I     +  +         +      +           G   +  + +     + 
Sbjct: 600 PVIGKRIEIQGLHKQG---HILEVELAIRQTTSDTGPLFLGYVRDITERKAADEALR 653



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 34/263 (12%), Positives = 69/263 (26%), Gaps = 28/263 (10%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP--NNHIGDLLKRQ-NTWYG 145
           ++A G + + +       G  + +++G RL D     H+       +   L        G
Sbjct: 544 MNAEGVVLDFNPAAEDVFGWTSDEIVGERLSDFIIPEHLREAHEAGLSHYLATGEGPVIG 603

Query: 146 KTTL---WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
           K         +G  L   ++LA     S           G V             +   +
Sbjct: 604 KRIEIQGLHKQGHILE--VELAIRQTTSDTGPL----FLGYVRDITERKAADEALRDAKE 657

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT-EKYPL 261
           +    +E K    ++   +          P   +   +S L +   +    +        
Sbjct: 658 RAEAANEAKAKFLAMMSHEIR-------TPMNGVLGILSLLRDTNLNPAQEIYVKTARES 710

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
             S    + +  DF  +  ++    Q    L+   K   +  +               + 
Sbjct: 711 GRSLLELINDILDFSKLEASRVELDQAPFNLRTAVKSVVDLFTPIAQEKALELNWRFPSD 770

Query: 322 TPETVDKCPIPFFVYSHGNLFYA 344
            P  V        V   G L   
Sbjct: 771 LPRNV--------VGDAGRLRQV 785


>gi|268326254|emb|CBH39842.1| putative sensory transduction histidine kinase [uncultured archaeon]
          Length = 1037

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 100/609 (16%), Positives = 204/609 (33%), Gaps = 26/609 (4%)

Query: 207  LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
            + +         K  +++             +K+    +        LK        S  
Sbjct: 445  VLDPDGDIIKANKAAFNLLGYSEAELIGMSFDKIVGKPKQEEEGKIELKKLIREPEASIT 504

Query: 267  SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF-EYLSHRNHPSLSAYFDEGENLTPET 325
            +            +                +                    E E      
Sbjct: 505  NLETTYLTKDRREIPVNFAASIMKNENGELQGIVCNACDITERKQAEEALRESEERFRAI 564

Query: 326  VDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
             +      F+          NP+   L    +   I        L         + I+ V
Sbjct: 565  SETAQDSIFIKDRALKYTLVNPTMERLFGLPASKIIGKTD--DDLF---DKEAASHIREV 619

Query: 385  MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
              +      +                 +   I     +   E +   GI  +  + +  +
Sbjct: 620  DSHVLKGETVEEEHTKKIK----GVLFSFHVIKVPMRDNSGEVIGLCGIARDITERKRAE 675

Query: 445  RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
              +     +  SI E+  D  A +  +G IL    ++    GY  E++L +    F    
Sbjct: 676  EALRESEERYRSIFESIQDVYAAVAMDGTILEITPSIQSFSGYAPEEVLGRSLAEFYVYP 735

Query: 505  TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHD 560
                    L  +         +   +   K  + ++    +K +  +S        TM D
Sbjct: 736  EQRA--ALLERLRLGG--SVNDYEVVLRHKTGRAVTSSFTVKVVTDASGTPVKIVGTMRD 791

Query: 561  ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
            ++E K+  ++     K   +    K++FL    HE+R+PL  I+G++ +++        N
Sbjct: 792  VTERKRLDDERERLIKKLGELDKMKTNFLNVAYHEMRSPLAPIVGYASLLEQGEL----N 847

Query: 621  PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
             +  +Y   I+ S + + +++  +L+++++E+GK  L  E +S+ E V+  +      A+
Sbjct: 848  EKQKKYVRIIEESASQLEELIESMLEVTRLEAGKAELSLEKMSIPEIVNNVLERFGPQAD 907

Query: 681  EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
             K+  I          +  D + +  I  N++SNAI +T   G+I I         + + 
Sbjct: 908  AKKQTISAVVPEGT-EVEGDKQKITAIFDNLISNAIKYTGEKGRIDIVVEDRKEG-IRVC 965

Query: 741  VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
            V DTG+G+   +L +A + F     S + +  G GLGL + K  V  + G+ ++ S   K
Sbjct: 966  VADTGIGIPKEQLPRAFERFFMADTSLRRK-GGLGLGLAIVKGYVKLHGGEVWVTSELGK 1024

Query: 801  GTLIEIIFP 809
            G+      P
Sbjct: 1025 GSKFWFTLP 1033



 Score =  124 bits (311), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 54/330 (16%), Positives = 102/330 (30%), Gaps = 21/330 (6%)

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIA 363
                  S      +     T++       V    G++  AN +   L  Y   + I   
Sbjct: 415 MAQRIKNSFTETVIKKELENTLNTMTDTLIVLDPDGDIIKANKAAFNLLGYSEAELIG-- 472

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
                ++  PK  +   I+   L R      + +    T        + + F      N+
Sbjct: 473 MSFDKIVGKPKQEEEGKIELKKLIR--EPEASITNLETTYLTKDRREIPVNFAASIMKNE 530

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
             E         +  + +  +  +     +  +I E   D I I +R       N  + +
Sbjct: 531 NGELQGIVCNACDITERKQAEEALRESEERFRAISETAQDSIFIKDRALKYTLVNPTMER 590

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           LFG P   I+ K      ++   S +    + +L  +  +           +  L S  +
Sbjct: 591 LFGLPASKIIGKTDDDLFDKEAASHIREVDSHVLKGETVE----EEHTKKIKGVLFSFHV 646

Query: 544 IIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH----- 594
           I   +  +S           DI+E K+ +  L  +++          D  A V+      
Sbjct: 647 IKVPMRDNSGEVIGLCGIARDITERKRAEEALRESEERYRSIFESIQDVYAAVAMDGTIL 706

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           EI TP  +I  FS     +  G      Y+
Sbjct: 707 EI-TP--SIQSFSGYAPEEVLGRSLAEFYV 733



 Score = 97.8 bits (242), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 40/377 (10%), Positives = 101/377 (26%), Gaps = 28/377 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG--- 145
           +D  G + + ++     +G    ++IGM    +      +    I      +        
Sbjct: 446 LDPDGDIIKANKAAFNLLGYSEAELIGMSFDKIVGKPKQEEEGKIELKKLIREPEASITN 505

Query: 146 -KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            +TT    +     +P++ AA  + + N E  G                    +  +++F
Sbjct: 506 LETTYLTKDRR--EIPVNFAASIMKNENGELQGI--VCNACDITERKQAEEALRESEERF 561

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHL--RMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
             + E  +    ++               L     +K+   T+      +     +    
Sbjct: 562 RAISETAQDSIFIKDRALKYTLVNPTMERLFGLPASKIIGKTDDDLFDKEAASHIREVDS 621

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
              +    E+E    I    ++       +++NS E           +     +E    +
Sbjct: 622 HVLKGETVEEEHTKKIKGVLFSFHVIKVPMRDNSGEVIGLCGIARDITERKRAEEALRES 681

Query: 323 PE----TVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
            E      +        V   G +    PS    + Y   + +         L    +  
Sbjct: 682 EERYRSIFESIQDVYAAVAMDGTILEITPSIQSFSGYAPEEVLG------RSLAEFYVYP 735

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
                 +   R   +       L   +     ++  +F      +     +   G   + 
Sbjct: 736 EQRAALLERLRLGGSVNDYEVVL---RHKTGRAVTSSFTVKVVTDASGTPVKIVGTMRDV 792

Query: 438 VDTRINKRKMEIEVMQL 454
            + +     ++ E  +L
Sbjct: 793 TERKR----LDDERERL 805


>gi|219670543|ref|YP_002460978.1| multi-sensor hybrid histidine kinase [Desulfitobacterium hafniense
           DCB-2]
 gi|219540803|gb|ACL22542.1| multi-sensor hybrid histidine kinase [Desulfitobacterium hafniense
           DCB-2]
          Length = 896

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 105/578 (18%), Positives = 203/578 (35%), Gaps = 61/578 (10%)

Query: 267 SSLPEQEDFHTINLNQY----TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
           +    +      +          + Y       +  +   +      +      E     
Sbjct: 71  APFEAEYRLRRYDGEYRHCLSRGQPYDDPKGELAGYTGVIIDITERKAAEIMTRENAEKF 130

Query: 323 PETVDKCPIPFFVYSH------GNLFYANPSFLLLTKYKSVDDIE---------IAGGLS 367
            E  ++     F++        G +   N     L      + I+             L+
Sbjct: 131 REIFNRITDCVFIHEVKDDGQIGKIQEVNDMACELIGLTRAEIIDLSREVIKVKSPLTLA 190

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
                  LS N  +   ML       I    + H    N    L                
Sbjct: 191 NEFTQKLLSKNYLVFEGMLLTHQGKEIPVEVKAHYHVLNGRRML---------------- 234

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-----GIILSTNRAVS 482
                I  +  + +   + +     +   + +  +D + +   +     G+++  N    
Sbjct: 235 ---LSIARDISNQKRIHKILLASHNKYRQLFDNITDAVFVYELQKDGYPGLLIEINEKAR 291

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
           +L GY  E+         +  ++P +    + + L      + E I      E+  + + 
Sbjct: 292 RLMGYH-EETFMFSAGPCIRPSSPQLTLDDVWQSLERTHSASFEGICTNLEGEDIPVEVN 350

Query: 543 IIIKKLPFSSCYSLTMHDISEWK-------QEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
                L  S      + DI+E K       + + +   AK+ AE  +  KS+FLA +SHE
Sbjct: 351 CHTFPLNGSKVMLTLLRDITERKQIEQERKRTEAEFQQAKEKAEAANRAKSEFLANMSHE 410

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           IRTP+  IIG    + +            E           +  I+ND+LD SKIE+GK+
Sbjct: 411 IRTPINGIIG----MIDLTLLTSLEKTQRENLKIAKNCAYSLFKIINDILDFSKIEAGKL 466

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSN 714
            +     +L E + + I      A  K + +  + + N+P     D   +KQ+  N+LSN
Sbjct: 467 TVEEIEFNLKEVIEQIIKTHSPEAERKGLDLAYTLSANLPDYYKGDPERIKQVLNNLLSN 526

Query: 715 AIHFTPSGGQIIISTTH----TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           A+ FT  G ++ ++           ++   V DTG+G+   +     + F Q+  S   +
Sbjct: 527 ALKFTERG-EVSLAVKRLQGDEDVSDLKFTVMDTGIGIAEEDQLHLFEEFNQVDGSITRK 585

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
             GTGLGL +++ +V+   G+ ++ S   KG+   ++ 
Sbjct: 586 YGGTGLGLAISRKLVEMMGGRIWVESEKGKGSSFGVVL 623



 Score = 97.0 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/264 (15%), Positives = 86/264 (32%), Gaps = 18/264 (6%)

Query: 325 TVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
            VD  P   +     GN  Y N ++L  T    V+ +   G LS +         N ++ 
Sbjct: 7   LVDNLPALLWSSDRAGNYDYVNQAWLEFTGLTFVE-VRGEGWLSCVHPEDSPGVMNVLEH 65

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
              +++        A     +++ E    ++       +   E     G+  +  + +  
Sbjct: 66  SRRHKA-----PFEAEYRLRRYDGEYRHCLS-RGQPYDDPKGELAGYTGVIIDITERKAA 119

Query: 444 KRKMEIEVMQLCSILEATSDGIAII----NRE-GIILSTNRAVSKLFGYPVEDILRKPFT 498
           +        +   I    +D + I     + + G I   N    +L G    +I+     
Sbjct: 120 EIMTRENAEKFREIFNRITDCVFIHEVKDDGQIGKIQEVNDMACELIGLTRAEIIDLSRE 179

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI--IIKKLPFSSCYSL 556
           V   ++  ++ N +  ++LS +    L    +  T + K + + +      L        
Sbjct: 180 VIKVKSPLTLANEFTQKLLSKN---YLVFEGMLLTHQGKEIPVEVKAHYHVLNGRRMLLS 236

Query: 557 TMHDISEWKQEKNKLSHAKKIAEK 580
              DIS  K+    L  +     +
Sbjct: 237 IARDISNQKRIHKILLASHNKYRQ 260



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 44/393 (11%), Positives = 86/393 (21%), Gaps = 30/393 (7%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144
             W+ D  G    +++   +  G    ++ G            D    +  L   +    
Sbjct: 14  LLWSSDRAGNYDYVNQAWLEFTGLTFVEVRGEGWLSCVHPE--DSPGVMNVLEHSRRHKA 71

Query: 145 GKTTLWPIEGTNLYVPIDLA-ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                + +   +      L+   P      E +G+ G  I            + +   +K
Sbjct: 72  PFEAEYRLRRYDGEYRHCLSRGQPYDDPKGELAGYTGVII--DITERKAAEIMTRENAEK 129

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
           F  +         + + K D    +    +      +             +   K PL  
Sbjct: 130 FREIFNRITDCVFIHEVKDDGQIGKIQEVNDMACELIGLTRAEIIDLSREVIKVKSPLTL 189

Query: 264 SEESS----------LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
           + E +                 H         K ++  L              N   +  
Sbjct: 190 ANEFTQKLLSKNYLVFEGMLLTHQGKEIPVEVKAHYHVLNGRRMLLSIARDISNQKRIHK 249

Query: 314 YFDEGENLTPETVDKCPIPFFVYSH------GNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
                 N   +  D      FVY        G L   N     L  Y     +  AG   
Sbjct: 250 ILLASHNKYRQLFDNITDAVFVYELQKDGYPGLLIEINEKARRLMGYHEETFMFSAGPCI 309

Query: 368 TLLDAPKLSDNNAIKPVMLYRS---------DRTCIAASARLHTIQWNRENSLAMTFIPF 418
                    D+        + +         +   I      HT   N    +       
Sbjct: 310 RPSSPQLTLDDVWQSLERTHSASFEGICTNLEGEDIPVEVNCHTFPLNGSKVMLTLLRDI 369

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEV 451
            +  Q  +   +   E +    +          
Sbjct: 370 TERKQIEQERKRTEAEFQQAKEKAEAANRAKSE 402


>gi|298529548|ref|ZP_07016951.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298510984|gb|EFI34887.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 1065

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 128/806 (15%), Positives = 268/806 (33%), Gaps = 68/806 (8%)

Query: 55  TDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI 114
           TD +    S         ++V D IP      +  D HG     +      +G    ++ 
Sbjct: 131 TDISARKQSPEPSPTGLTSYVLDTIPD---LIFIKDMHGVYIGCNSAFASHLGRDRDEIT 187

Query: 115 GMRLCDVSDILHIDPNNHI-GDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNR 173
           G     +      D        +LKR  +   +  +   +G    + ++    P   ++ 
Sbjct: 188 GKNDYQLYSAEMADFFREKDKQVLKRAASGSNEEWISYPDGR--EILLETLKTPYRDQHG 245

Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH 233
             +G  G G               +  +K+F  + E   G   +      I         
Sbjct: 246 NITGIVGIG--RDITGRKMAEKALEESEKRFRIVFENLPGGIFIHDLDGKILMANDTACK 303

Query: 234 LRMKNKVSSLT----EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYF 289
               +    L     +   H  +     +   L  E  S+  +      N + Y  + Y 
Sbjct: 304 NTGYSMQELLNMYIKDIDVHALNPEGRFEAWDLLREGQSISVESMHTRKNGSSYPTEVYL 363

Query: 290 GTLQNNSKESFEYLS--HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANP 346
             +  ++K     ++        +     E E+      +KCPI    +   G + + N 
Sbjct: 364 NAMSLDAKPVIFAVAFDITVRKRMEKALQESESSFKMLAEKCPISIMRFDRHGRVNFVND 423

Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
             +    +  +D  +      ++ + P L +      V         +            
Sbjct: 424 WHIDKFAFNRLD--KDFFLNRSVHELPGLVNAGIDHEVAKIFK-GRTVEMDEVFFPEFAA 480

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
                 ++        +         I       +     + I   +   + E++   + 
Sbjct: 481 GGPG-WVSIRAVPVY-EKGVVAGGILIRENITQRKKADEALRISEQKYRQLFESSPVSLW 538

Query: 467 IIN------------REG----------------------IILSTNRAVSKLFGYPVEDI 492
            ++             EG                       +L  N+    LF    +  
Sbjct: 539 ELDFSEVKKRLDALQAEGVQDLHSYFAGRQELIWEMADMVKVLDVNQQSLNLFRARTKRE 598

Query: 493 LRKPFTVFLEQNTP-SVMNHYLTEILSLDLRQTLEKITLGSTKEE--KLLSLRIIIKKLP 549
           L    T   ++ +       +L  +        +E+  +    ++    +   +      
Sbjct: 599 LMTGITSIFDKESQNKNFIQFLKVMACRGQGVVVERDHVTLDGQKLKTQVYWSVASGHEQ 658

Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
             S     + D ++  Q + +L  AK+ A   +  KS FLA +SHEIRTP+  I+G  ++
Sbjct: 659 DYSLVLACIVDNTDLLQTRQQLYQAKEQAVAANQAKSHFLATMSHEIRTPINGIMGLMQL 718

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           +++       +    EY +    S   +  +++D+LD+S++E+GKM +  E  S  +   
Sbjct: 719 MQDT----TQDREQQEYVDLALTSAQRLTRLLSDILDLSRVEAGKMTIQEEKFSPRDLAG 774

Query: 670 EAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
               L ++ A ++ + +       +P  I+ D   V+QI  N++ NA+ ++  G  + + 
Sbjct: 775 SVAELFKVTAKDRGVSLECILDPGLPGEIIGDPARVRQILFNLVGNAVKYSEHG-NVNLH 833

Query: 729 -----TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
                     +  V+  V DTG+G+    ++    PF Q+ + Q  + +G GLGL + + 
Sbjct: 834 MTPVPAGRNEDIRVLFIVSDTGIGIPEDRIKTLFDPFVQVEDYQTRKHQGAGLGLAIIRR 893

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFP 809
           +     G   I ST  +GT + +  P
Sbjct: 894 LTQLMGGNISIDSTEGEGTAVYVALP 919



 Score =  118 bits (296), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 59/613 (9%), Positives = 173/613 (28%), Gaps = 73/613 (11%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNTWYG-KT 147
             G     +  L +  G  +       + D+   L++D  +   I  L+ +Q      + 
Sbjct: 38  PKGLAVSANHALSRMFGYDSPDEFTGTVKDIWSQLYVDSADRAEIISLVHKQGAVNDHEC 97

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
            +   +G+  +   ++ A     ++   + ++ F  +                    S++
Sbjct: 98  RMRRRDGSIFWSSQNIRAD--QDQHGRLNHYQVF--ITDISARKQSPEPSPT--GLTSYV 151

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPP--HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
            +       ++          S       R +++++   +Y  +  ++    +       
Sbjct: 152 LDTIPDLIFIKDMHGVYIGCNSAFASHLGRDRDEITGKNDYQLYSAEMADFFREKDKQVL 211

Query: 266 ESSLPE--QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS----LSAYFDEGE 319
           + +     +E     +  +   +      ++        +      +         +E E
Sbjct: 212 KRAASGSNEEWISYPDGREILLETLKTPYRDQHGNITGIVGIGRDITGRKMAEKALEESE 271

Query: 320 NLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
                  +  P   F++   G +  AN +    T Y   + +         +D   L+  
Sbjct: 272 KRFRIVFENLPGGIFIHDLDGKILMANDTACKNTGYSMQELL---NMYIKDIDVHALNPE 328

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
              +   L R +   I+  +     + N  +     ++     +  P       +  +  
Sbjct: 329 GRFEAWDLLR-EGQSISVES--MHTRKNGSSYPTEVYLNAMSLDAKPV---IFAVAFDIT 382

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF---GYPVEDILRK 495
             +  ++ ++        + E     I   +R G +   N      F       +  L +
Sbjct: 383 VRKRMEKALQESESSFKMLAEKCPISIMRFDRHGRVNFVNDWHIDKFAFNRLDKDFFLNR 442

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--- 552
                L     + ++H + +I      +  E +            + I    +       
Sbjct: 443 SV-HELPGLVNAGIDHEVAKIFKGRTVEMDE-VFFPEFAAGGPGWVSIRAVPVYEKGVVA 500

Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
              L   +I++ K+    L  +++   +                 +P++           
Sbjct: 501 GGILIRENITQRKKADEALRISEQKYRQLFES-------------SPVS----------- 536

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV---S 669
                L      +  + +   G      V DL       +G+  L +E   + + +    
Sbjct: 537 --LWELDFSEVKKRLDALQAEG------VQDLHSY---FAGRQELIWEMADMVKVLDVNQ 585

Query: 670 EAISLVQLYANEK 682
           ++++L +     +
Sbjct: 586 QSLNLFRARTKRE 598



 Score =  103 bits (258), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 35/259 (13%), Positives = 74/259 (28%), Gaps = 12/259 (4%)

Query: 323 PETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
            + +   P+  F+    G    AN +   +  Y S D+    G +  +     +   +  
Sbjct: 23  QDILMHAPVGIFISTPKGLAVSANHALSRMFGYDSPDEF--TGTVKDIWSQLYVDSADRA 80

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
           + + L            R+   +    +    +       +Q            +    +
Sbjct: 81  EIISLVHKQGAVNDHECRM---RRRDGSIFWSSQNIRADQDQHGRLNHYQVFITDISARK 137

Query: 442 INKRKMEIEVMQLCS-ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
            +    E     L S +L+   D I I +  G+ +  N A +   G   ++I  K     
Sbjct: 138 QSP---EPSPTGLTSYVLDTIPDLIFIKDMHGVYIGCNSAFASHLGRDRDEITGKNDYQL 194

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTM 558
                         ++L      + E+        E LL       +    +        
Sbjct: 195 YSAEMADFFREKDKQVLKRAASGSNEEWISYPDGREILLETLKTPYRDQHGNITGIVGIG 254

Query: 559 HDISEWKQEKNKLSHAKKI 577
            DI+  K  +  L  ++K 
Sbjct: 255 RDITGRKMAEKALEESEKR 273


>gi|307307210|ref|ZP_07586947.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175]
 gi|306910265|gb|EFN40697.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175]
          Length = 1629

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 126/781 (16%), Positives = 271/781 (34%), Gaps = 62/781 (7%)

Query: 90   DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL--HIDPNNHIGDLLKRQNTWYGKT 147
            D  G +   ++   +  G     +IG   CD+       ++      ++   +      +
Sbjct: 363  DLTGNITSWNQGAEEIFGYTQTDVIGHSSCDLIIPPSIVLEEQVLFAEVFSGKTVLNQIS 422

Query: 148  TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA----LGKRLDKK 203
            T     G+  +V     +LPIY  +    G      +       +       L  RL+++
Sbjct: 423  THQRQNGS--HVSTSTTSLPIYDEDSAIVGLSQ--TIRDITTQQEAERYILSLNARLEQE 478

Query: 204  FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH-----KDDVLKTEK 258
             +      +      +   D  +QQ           +  + + + H     +  +L    
Sbjct: 479  VTKRTNALQQALLENQTLLDTINQQLLYSATDPNGVILEVNDNFCHVSGYSRKQLLGETH 538

Query: 259  YPLLTSEESSLPEQEDFHTINLNQYT---------------KKQYFGTLQNNSKESFEYL 303
              L + E  +   +  +  I                          G + N +     ++
Sbjct: 539  AILNSGEHDAAFWRTMWTQIKSGLSWHGEICNRDRHQMLKWFDTVIGPVFNENGNIERFV 598

Query: 304  SHRNHPSLSAYFDEGENLTPETVDKCPIP------FFVYSHGNLFYANPSFLLLTKYKSV 357
            + R   +        +N     +                  G +   N     L  Y +V
Sbjct: 599  ALRTDITERKLAQIEKNKLGSLLTNVLDAASEMSIIATDKKGVITIFNRGAEQLLGYAAV 658

Query: 358  DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR--------TCIAASARLHTIQWNREN 409
            D I ++      L     + +  +                    + +  R  T      +
Sbjct: 659  DMIGLSTPAPLHLPEEVAARSAELSSEYGEDIQGFDVFVYKARTLGSETRTWTYVRKDTS 718

Query: 410  SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469
               ++       +   E +   GI  +       ++ +      L    E    GI   +
Sbjct: 719  QCQVSLSVTAMLDNVGEIIGYLGIAIDISQVLQQQKALITASNHLSKAAEVAKLGIWSWD 778

Query: 470  REGIILSTNRAVSKLFGYP----VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
                 L  N  +  ++ +P     + +  + + + +  +        L   +    +   
Sbjct: 779  LRDNSLEWNERMFAIYDHPLSLQDKGLTYEHWRMRIHSDDIDFAEAKLKAAIEEKDQYDP 838

Query: 526  EKITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
                + +    + +     I++              DI+E +Q +  L  AK  A+  ++
Sbjct: 839  IFRVVRTDGTIRYVQAAAQIERDVTGQVTKVIGINLDITEQRQLEETLREAKHEADAANA 898

Query: 584  HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
             KS FLA +SHEIRTP+ A++G  +++++         +  +Y +    +   +L ++ND
Sbjct: 899  AKSAFLANMSHEIRTPMNAVLGMLQLMQHTSMSV----QQQDYVSKTQTAAKSLLGLLND 954

Query: 644  LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLR 702
            +LD SKI++GK+ L   P S++  + +   ++      K + +       +P  +LAD  
Sbjct: 955  ILDFSKIDAGKLTLDLHPCSIELLMRDLAIVLSGNHGNKNVEVMFDLDPALPAWLLADQL 1014

Query: 703  SVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDTGVGMTNYELEKAMK 758
             ++QI +N+  NA+ FT  G Q+ ++     +E     V + + DTG+G++  ++E+   
Sbjct: 1015 RLQQILVNLAGNALKFTRHG-QVTVAMECLRHEVNTVTVQISISDTGIGISEEQIERIFT 1073

Query: 759  PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE--IIFPLYDTSHP 816
             F Q  +S   R  GTGLGL ++K +V+   G+  + S    G+     + F + +    
Sbjct: 1074 GFEQAESSTSRRFGGTGLGLAISKKLVELMGGQLNVTSRVGVGSRFWFDVTFCVMEVEAT 1133

Query: 817  H 817
            H
Sbjct: 1134 H 1134



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 56/429 (13%), Positives = 120/429 (27%), Gaps = 43/429 (10%)

Query: 169 YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228
              ++EF G RGFG +   RV N   A      K         +  +    EKY I   +
Sbjct: 93  RDVDQEFPGARGFGFIR--RVPNSDEAAFLTRAKNDDWPDFNIRQLTPHSGEKYVIEYIE 150

Query: 229 SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288
              P  R +  +       AH+                + +   +       +    +  
Sbjct: 151 ---PIDRNRAAIGLDVASEAHRKAAADAAMLSGEVRLSAPITLVQATRKPLQSFLILQPI 207

Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSF 348
           + T+           + +   +    +     +T E +    +             N   
Sbjct: 208 YRTI-------SVPKTPQERLAAGYGWSYAPLVTNEVLTGLAL-------------NQKM 247

Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML----YRSDRTCIAASARLHTIQ 404
             L     +   E                +     +       +     IA  A + ++ 
Sbjct: 248 TKLL-LSDITQTERPISFFETHPDDASPLSAYSHTLTKEIFGRKWQVEVIAYPAFIQSLH 306

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
                 L    +     +     +            R  + ++E       S+LE + D 
Sbjct: 307 ------LNQPSLVLLSGSLLSLLLAAFIAIWSISLQRKQQVQLEQARR--ASMLEHSLDA 358

Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
           I   +  G I S N+   ++FGY   D++       +   +  +    L   +       
Sbjct: 359 IISYDLTGNITSWNQGAEEIFGYTQTDVIGHSSCDLIIPPSIVLEEQVLFAEVFSGKT-V 417

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEK 580
           L +I+    +    +S       +          S T+ DI+  ++ +  +       E+
Sbjct: 418 LNQISTHQRQNGSHVSTSTTSLPIYDEDSAIVGLSQTIRDITTQQEAERYILSLNARLEQ 477

Query: 581 ESSHKSDFL 589
           E + +++ L
Sbjct: 478 EVTKRTNAL 486



 Score = 78.9 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/391 (9%), Positives = 102/391 (26%), Gaps = 33/391 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGKT 147
            D +G + E+++      G    +++G     ++   H       +   +K   +W+G+ 
Sbjct: 509 TDPNGVILEVNDNFCHVSGYSRKQLLGETHAILNSGEHDAAFWRTMWTQIKSGLSWHGEI 568

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                +   +    D    P+++ N      R   +          +    +L    +++
Sbjct: 569 CN--RDRHQMLKWFDTVIGPVFNENGNIE--RFVALRTDITERKLAQIEKNKLGSLLTNV 624

Query: 208 HEIKKGHSSVEKEKYDIFSQ----QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
            +     S +  +K  + +               + +   T    H  + +      L +
Sbjct: 625 LDAASEMSIIATDKKGVITIFNRGAEQLLGYAAVDMIGLSTPAPLHLPEEVAARSAELSS 684

Query: 264 SEESSLPEQEDF----HTINLNQYT------------KKQYFGTLQNNSKESFEYLSHRN 307
                +   + F     T+     T                   + +N  E   YL    
Sbjct: 685 EYGEDIQGFDVFVYKARTLGSETRTWTYVRKDTSQCQVSLSVTAMLDNVGEIIGYLGIAI 744

Query: 308 HPSLSAYFDE----GENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEI 362
             S      +      N   +  +   +  + +    N    N     +  +     ++ 
Sbjct: 745 DISQVLQQQKALITASNHLSKAAEVAKLGIWSWDLRDNSLEWNERMFAIYDHPLS--LQD 802

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
            G           SD+       L  +             ++ +      +      + +
Sbjct: 803 KGLTYEHWRMRIHSDDIDFAEAKLKAAIEEKDQYDPIFRVVRTDG-TIRYVQAAAQIERD 861

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
              +     GI  +  + R  +  +     +
Sbjct: 862 VTGQVTKVIGINLDITEQRQLEETLREAKHE 892


>gi|218246123|ref|YP_002371494.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8801]
 gi|218166601|gb|ACK65338.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8801]
          Length = 1090

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 132/798 (16%), Positives = 269/798 (33%), Gaps = 96/798 (12%)

Query: 96  KEISEELPKTIGNYAFKMIGM--RLCDVSDILHIDPN-NHIGDLLKRQNTWYGKTTLWPI 152
             IS    + +G    ++         +     ++     + + L+ Q   Y        
Sbjct: 58  LFISPRWKEMLGYQDQELPNRFDTWKQLLHPQDVERVMEAVQNHLEGQTNHYQIEFRLRC 117

Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH---E 209
           +  N    I      +++   +    R  G         + + L + L      L    +
Sbjct: 118 QDGNYK-WILSKGKALWNSAGK--AIRMVGSHSDISDRKEEQILLRSLIDSIPDLIFCKD 174

Query: 210 IKKGHSSVEKEKYDIFS-QQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
            +  +                        +        +  ++D +  EK     +EE  
Sbjct: 175 AQGVYKICNNAFEAFVGKPSQEIVGKTDFDLFPPEEALFFRENDRIMREKKRPHRNEEWI 234

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
                    ++  +       G L      S +    +   +      + ++L      +
Sbjct: 235 TYPDGSRRLLDTLKTPFCCSEGKLMGVIGISRDITDRKQKENTVKKQAKRDSLLSSIARQ 294

Query: 329 C-------PIPFFVYSHGNLFYANPSF-------LLLTKYKSVDDIEIAGGLSTLLDAPK 374
                    + F + + G+    +  +         L                  L   +
Sbjct: 295 LIDQDFNTAVNFTLEALGHFTDGDRGYIIRYSPQQRLWNMTHEWCNYQVPST---LQQSQ 351

Query: 375 LSDNNAIKPVMLYRSDRTCI--------AASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
                 +        +   I           A    + +    +  +  +P   A Q   
Sbjct: 352 NIPVEYLPWFSRQLLNGQPICVNSLDDLPPQAIAERVVFKNSLNPTLVVVPMVTAGQTVG 411

Query: 427 NMPQNGIEPED-------------------VDTRINKRKMEIEVMQLCSILEATSDGIAI 467
            +  +    +                          +   +    +   IL+  ++ I  
Sbjct: 412 YLGFDANSSKIWTQEEVNLLKLVGEFIAIAQARSQAEDDRKESEARFAGILDNANEAIIS 471

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI---LSLDLRQT 524
           I+ +  I   N A  K FGY   ++L +PF   +          Y+ +    L    +  
Sbjct: 472 IDEQQQITLFNHAAEKTFGYQAVNVLGQPFNQLIPPRFQDSHYQYVEDFSTCLETSRQMV 531

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEKES 582
             +   G  ++       + I K+       ++  + DI+E +Q +  L  AK+ A+  +
Sbjct: 532 GRRPVFGRRQDGSEFLAEVSISKIQLKGRKLFTAIVRDITERQQAEEALKQAKEAADAAN 591

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
             KS+FLA +SHE+RTPL AI+GF++V++  R     NP + +  + I RSG  +L+++N
Sbjct: 592 RAKSEFLASMSHELRTPLNAILGFTQVMRRDR---TLNPEHQQNLSIISRSGEHLLELIN 648

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADL 701
           D+L++SKIE+G+   H     L   +    +++ L A EK + +       +P+ +  D 
Sbjct: 649 DILEMSKIEAGRTTFHSNSFDLYRLLDNLEAMLHLKAQEKGLQLIFERTPEVPQYLETDE 708

Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHT----------------------------- 732
             ++Q+ +N+L NAI FT  GG + +                                  
Sbjct: 709 GKLRQVLINLLGNAIKFTEEGG-VTLRVKSEVRSRKGGFRESATLRTIDLEKPALTPIIA 767

Query: 733 SNEEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
            +E++++   V D+G G+   E+++    FGQ    +Q + EGTGLGLP+++  V    G
Sbjct: 768 DSEQIVITFEVEDSGPGIAPEEVDQLFAAFGQTETGRQAQ-EGTGLGLPISRKFVQLMGG 826

Query: 791 KFYIFSTPAKGTLIEIIF 808
              + S   +G+L     
Sbjct: 827 NISVSSILGQGSLFAFSI 844



 Score =  101 bits (251), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 37/316 (11%), Positives = 83/316 (26%), Gaps = 19/316 (6%)

Query: 286 KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYA 344
           +Q    LQ                       E +      +       + ++      + 
Sbjct: 3   EQIIKQLQQEIATLKAVQQATLKIQQE--LQESQERWQLIIQATNEGIWDWNLRTNELFI 60

Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
           +P +  +  Y+  + +         L  P+  D   +   +    +            ++
Sbjct: 61  SPRWKEMLGYQDQE-LPNRFDTWKQLLHPQ--DVERVMEAVQNHLEGQTNHYQIE-FRLR 116

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
               N   +        N   + +   G   +  D +        E + L S++++  D 
Sbjct: 117 CQDGNYKWILSKGKALWNSAGKAIRMVGSHSDISDRK-------EEQILLRSLIDSIPDL 169

Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
           I   + +G+    N A     G P ++I+ K                    +        
Sbjct: 170 IFCKDAQGVYKICNNAFEAFVGKPSQEIVGKTDFDLFPPEEALFFRENDRIMREKKRPHR 229

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKES 582
            E+         +LL                      DI++ KQ++N +    K     S
Sbjct: 230 NEEWITYPDGSRRLLDTLKTPFCCSEGKLMGVIGISRDITDRKQKENTVKKQAKRDSLLS 289

Query: 583 SHKSDFLARVSHEIRT 598
           S     + +   +  T
Sbjct: 290 SIARQLIDQ---DFNT 302



 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/365 (10%), Positives = 92/365 (25%), Gaps = 35/365 (9%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN----NHIGDLLKR-QNTW 143
           ID    +   +    KT G  A  ++G     +      D +          L+  +   
Sbjct: 472 IDEQQQITLFNHAAEKTFGYQAVNVLGQPFNQLIPPRFQDSHYQYVEDFSTCLETSRQMV 531

Query: 144 YGKTTL-WPIEGTNLYVPIDLAALPIYSRNREFSGFRGF-GIVHVNRVDNDPRALGKRLD 201
             +       +G+     + ++ +       +  G + F  IV             K+  
Sbjct: 532 GRRPVFGRRQDGSEFLAEVSISKI-------QLKGRKLFTAIVRDITERQQAEEALKQAK 584

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
           +     +  K    +    +       +     ++  +  +L   +     ++      L
Sbjct: 585 EAADAANRAKSEFLASMSHELRT-PLNAILGFTQVMRRDRTLNPEHQQNLSIISRSGEHL 643

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
           L      + +  +   I   + T       L          L  +          E    
Sbjct: 644 L----ELINDILEMSKIEAGRTTFHSNSFDLYRLLDNLEAMLHLKAQEKGLQLIFERTPE 699

Query: 322 TPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
            P+ ++           G L       + L            GG++  + +   S     
Sbjct: 700 VPQYLET--------DEGKLRQV---LINLLGNAIK--FTEEGGVTLRVKSEVRSRKGGF 746

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
           +     R+      A   L  I  + E  +    +        PE + Q        +T 
Sbjct: 747 RESATLRTIDLEKPA---LTPIIADSEQIVITFEVEDSGPGIAPEEVDQLFAAFGQTETG 803

Query: 442 INKRK 446
              ++
Sbjct: 804 RQAQE 808


>gi|224371411|ref|YP_002605575.1| putative two-component system sensor protein [Desulfobacterium
           autotrophicum HRM2]
 gi|223694128|gb|ACN17411.1| putative two-component system sensor protein [Desulfobacterium
           autotrophicum HRM2]
          Length = 1272

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 114/541 (21%), Positives = 215/541 (39%), Gaps = 22/541 (4%)

Query: 278 INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS 337
                  + +     Q       E+L +           E E      +       FV  
Sbjct: 204 AEQIARVQAEDAERTQKELTRYKEHLENLVEDRTE-RLRESEEYNHLILQSVAEGIFVTD 262

Query: 338 HGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA 396
              L  YAN +   +  Y+  + ++              S +      + +   +   + 
Sbjct: 263 TEGLCTYANEAAQKMLGYEIKELVDENIHDLFHHSNDDGSPHLREDCPIYWAHTKGITSF 322

Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
                  + +            ++ ++    +    +  +    +  +  +      L S
Sbjct: 323 RRDEVFWRKDGSFFYTSYTSVPQRKDKT--IIGSVVVFRDISARKKVEDALRESEYHLKS 380

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           IL  T++G   +N    I+S N  + K+     ED+L +    FL++   +++N  L  +
Sbjct: 381 ILMTTNEGFLWVNNGAHIVSVNDTMCKISSRAREDLLGRALFEFLDEENIAILNEQL-RL 439

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLS 572
            +             +  +   +        L   +         + DI+  K+ + +L 
Sbjct: 440 RNTGQTSVY--EIALNRPDGSKVICEFHATPLYDKNGVKTGSFAMVSDITHRKKMEEELI 497

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
            A+  AE  +  KSDFLA +SHEIRTP+ A++G + +       P    +  +Y + I  
Sbjct: 498 VARDKAEAATRAKSDFLANMSHEIRTPMNAVMGMTHLALQTDLTP----KQRDYLHKIQI 553

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK-RILIRTSFA 691
           S N +L ++ND+LD SKIE+GKM +     +LDE +    +++ +   EK  I +     
Sbjct: 554 SANSLLGVINDILDFSKIEAGKMGMESIDFNLDEVLENLSTMIAVKLREKEGIEVLFDTG 613

Query: 692 NNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGV 746
            ++P +++ D   + QI +N+ +N+I FT SG +I++ST   S       +   VRDTG+
Sbjct: 614 ADVPRQLVGDPLRLSQILVNLANNSIKFTESG-EIVVSTKVVSQGNHVIVLQFSVRDTGI 672

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+T   + +    F Q   S   R  G+GLGL + + +V    GK ++ S   KG+    
Sbjct: 673 GLTEEHMVQLFTAFSQADTSITRRYGGSGLGLSICQRLVKMMGGKIWVESIYGKGSTFYF 732

Query: 807 I 807
            
Sbjct: 733 T 733



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 19/257 (7%), Positives = 71/257 (27%), Gaps = 15/257 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL-------K 138
            +  D  G     +E   K +G    +++   + D+    + D + H+ +         K
Sbjct: 258 IFVTDTEGLCTYANEAAQKMLGYEIKELVDENIHDLFHHSNDDGSPHLREDCPIYWAHTK 317

Query: 139 RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
              ++      W  +G+  Y      ++P   +++   G     +              +
Sbjct: 318 GITSFRRDEVFWRKDGSFFYTSYT--SVPQR-KDKTIIG--SVVVFRDISARKKVEDALR 372

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLK 255
             +     +                I S             ++ +      +  ++++  
Sbjct: 373 ESEYHLKSILMTTNEGFLWVNNGAHIVSVNDTMCKISSRAREDLLGRALFEFLDEENIAI 432

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
             +   L +   +   +   +  + ++   + +   L + +       +  +  +     
Sbjct: 433 LNEQLRLRNTGQTSVYEIALNRPDGSKVICEFHATPLYDKNGVKTGSFAMVSDITHRKKM 492

Query: 316 DEGENLTPETVDKCPIP 332
           +E   +  +  +     
Sbjct: 493 EEELIVARDKAEAATRA 509


>gi|294496643|ref|YP_003543136.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
 gi|292667642|gb|ADE37491.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
          Length = 632

 Score =  373 bits (957), Expect = e-100,   Method: Composition-based stats.
 Identities = 112/551 (20%), Positives = 211/551 (38%), Gaps = 28/551 (5%)

Query: 279 NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS----LSAYFDEGENLTPETVDKCPIPFF 334
           +   +  +     + +       Y+  +   +          +      + +   P+   
Sbjct: 95  DGTYFYVQIRISPIYDKKGNIIAYMGSQRDITNLKQTEKRLQQEREFLEKLIQTSPVAIH 154

Query: 335 VYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393
                 N+   N S   +  +   + I            P + + N  + + L       
Sbjct: 155 GTDTNSNVIIWNESSEKIFGWSREEVIGEFL--------PTVPEENIDEHLSLRNRVLAG 206

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
              +           + L  +       +Q            +  + +  + K++    Q
Sbjct: 207 ETITGYEVCRLRKDGSYLYGSLSVAPMYDQKGNIFGIMANMEDITEKKQYEYKLKEAFNQ 266

Query: 454 LCSILEATSDGIA--IINREGIIL--STNRAVSKLFGYPVEDILR--KPFTVFLEQNTPS 507
           L SI       +    ++  G  +    +  V++L   P   I    K F  +++ +   
Sbjct: 267 LESIHFNLPISVWSATVDETGDFVDTYISEGVNELLALPPNTIGNDFKAFLNYVKPHYLP 326

Query: 508 VMNHYLTE-ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM---HDISE 563
            +     E I +     + E   +  +   +     +   +    +          DI++
Sbjct: 327 EIKDKFEEGIKNPGKVVSFEYEVINGSGVTRWF---LSSGRAQEENGTVKVYGSTIDITK 383

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            K  +  L +AK +AE  +  K++FLA VSHE+RTPL AIIGFS+++   + G L +   
Sbjct: 384 NKNAEKSLINAKLLAENANRAKTEFLANVSHELRTPLNAIIGFSQILSTNKSGNLNDKEL 443

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
             Y + I +SGN +L+++N +LDISK+++GK +L  E V   E   +    +     +K 
Sbjct: 444 K-YVSNILKSGNHLLELINKILDISKLQAGKQDLEIEYVDFAEICEDIKPFIDPLIAKKN 502

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
           +            I AD   + QI  N+L NAI FTP  G I I+     +    + V+D
Sbjct: 503 LSFECILDCTDTNIKADKTKMLQIMHNLLGNAIKFTPENGSIAINARCIGDNF-QVSVKD 561

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TG+G+     +     F Q+ +S   + EGTGLGL L K  ++ + G  ++ S   KG+ 
Sbjct: 562 TGIGIPEASHKDIFHSFKQVDSSATRKYEGTGLGLALVKEYIEMHGGDIWVESEVGKGST 621

Query: 804 IEIIFPLYDTS 814
              + P   +S
Sbjct: 622 FTFVIPQNQSS 632



 Score =  105 bits (263), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 31/254 (12%), Positives = 77/254 (30%), Gaps = 15/254 (5%)

Query: 323 PETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
            E V +      V      + Y N +   L  +      E   G  T +   +       
Sbjct: 17  SEIVKQSVDSIVVTDTNSAIIYMNKAAEHLFGWS----FEELKGRKTDVFNAEQMSEEIQ 72

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
           K +    +                       +        ++    +   G + +  + +
Sbjct: 73  KEIYDTVASGKIYNGELLNK---KKDGTYFYVQIRISPIYDKKGNIIAYMGSQRDITNLK 129

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
             +++++ E   L  +++ +   I   +    ++  N +  K+FG+  E+++ + F   +
Sbjct: 130 QTEKRLQQEREFLEKLIQTSPVAIHGTDTNSNVIIWNESSEKIFGWSREEVIGE-FLPTV 188

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLT 557
            +            +L+ +             K+   L   + +  +             
Sbjct: 189 PEENIDEHLSLRNRVLAGETITGY--EVCRLRKDGSYLYGSLSVAPMYDQKGNIFGIMAN 246

Query: 558 MHDISEWKQEKNKL 571
           M DI+E KQ + KL
Sbjct: 247 MEDITEKKQYEYKL 260



 Score = 65.8 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/368 (6%), Positives = 93/368 (25%), Gaps = 15/368 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV--SDILHIDPNNHIGDLLKRQNTWYGK 146
            D +  +  +++      G    ++ G +  DV  ++ +  +    I D +     + G+
Sbjct: 30  TDTNSAIIYMNKAAEHLFGWSFEELKGRK-TDVFNAEQMSEEIQKEIYDTVASGKIYNGE 88

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND---PRALGKRLDKK 203
                 +GT  YV I ++  PIY +      + G                    +   +K
Sbjct: 89  LLNKKKDGTYFYVQIRIS--PIYDKKGNIIAYMGSQ--RDITNLKQTEKRLQQEREFLEK 144

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
                 +    +                     +  +         ++          + 
Sbjct: 145 LIQTSPVAIHGTDTNSNVIIWNESSEKIFGWSREEVIGEFLPTVPEENIDEHLSLRNRVL 204

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
           + E+    +      + +          + +     F  +++    +    ++       
Sbjct: 205 AGETITGYEVCRLRKDGSYLYGSLSVAPMYDQKGNIFGIMANMEDITEKKQYEYKLKEAF 264

Query: 324 ETVD----KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
             ++      PI  +  +         +++       +  +      +           +
Sbjct: 265 NQLESIHFNLPISVWSATVDETGDFVDTYISE-GVNELLALPPNTIGNDFKAFLNYVKPH 323

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
            +  +     +             +    + +   F+   +A +    +   G   +   
Sbjct: 324 YLPEIKDKFEEGIKNPGKVVSFEYEVINGSGVTRWFLSSGRAQEENGTVKVYGSTIDITK 383

Query: 440 TRINKRKM 447
            +  ++ +
Sbjct: 384 NKNAEKSL 391


>gi|224372027|ref|YP_002606192.1| predicted sensory/regulatory protein RpfC [Desulfobacterium
            autotrophicum HRM2]
 gi|223694746|gb|ACN18028.1| predicted sensory/regulatory protein RpfC [Desulfobacterium
            autotrophicum HRM2]
          Length = 1316

 Score =  372 bits (956), Expect = e-100,   Method: Composition-based stats.
 Identities = 132/786 (16%), Positives = 271/786 (34%), Gaps = 50/786 (6%)

Query: 52   SNFTDQNQESVSNTNYLDSENTFV--FDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNY 109
              F D +    +      SE  F   F+ I     F + +D  G + + +E   + +   
Sbjct: 245  ETFIDISDRKSAEERLKKSETNFRSFFNSIDN---FLFVLDVKGNILKANETAIRRLEYS 301

Query: 110  AFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALP 167
              ++ G+ +  V             +G++++    +        I  +  Y+ ++    P
Sbjct: 302  EEELNGLNVAMV-HPEDRRAEAKKIVGEMIEGSADFCPIPV---ISKSGRYIQVETRVHP 357

Query: 168  IYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ 227
                +R       F +        +   L  +     + L  I +    +  +    F +
Sbjct: 358  GSWDDRPAL----FCVTKDVTKIRETEELFSKAFHASASLMGISEIDGGLFIDVNRAFVE 413

Query: 228  QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287
             S         K S     + + +D  +       +    ++         +        
Sbjct: 414  TSGYTRNEAIGKTSVELGLFPNPEDRNRVASMVKESGFIKNMEITIRTKIGDKKFGLFSA 473

Query: 288  YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANP 346
                +  N           +  S      E +      ++   +  + +       Y + 
Sbjct: 474  TRIDVNGNPCLLTTLTDITDRKSAEDALRENKERLDLALESASMAPWHWDTMEKKLYLDS 533

Query: 347  SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
               LL    +       G L   +DA    D   ++      + R           + W 
Sbjct: 534  KACLLLGLDTE---RSNGTLQDFIDAVHPDDRARLRQARDRTTARGTFYE--HEFRVVWP 588

Query: 407  RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
              ++  +T       N        +G+  +    +I ++  E E  +L ++++ T+ G  
Sbjct: 589  DGSTHYITAHGKPVHNSSGVMTKIHGLIGDISKRKIAQQNFEDERQRLANVIKGTNTGTW 648

Query: 467  IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL--DLRQT 524
              N +      N+  +++ GY +E++     + +     P  +      +L         
Sbjct: 649  EWNVQTGETVYNKRWAEILGYTLEELEPADVSTWNRLTHPQDLEKSDEMLLKHFTGEIPY 708

Query: 525  LEKITLGSTKEEKLLSLR-----IIIKKLPFSSCYSLTMHDISEWKQEKNKLS------- 572
             +       K    + +      +             T  DI++ KQ + +L        
Sbjct: 709  YDIQCRMRHKRGHWVWVHDRGQVMTWTADGKPLMMFGTHMDINQAKQVEQELMATNFQLE 768

Query: 573  -------HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
                        AE  +  K +FLA +SHEIRTP+  IIG + ++ + +           
Sbjct: 769  DAMARANQMATEAELANLAKGEFLANMSHEIRTPMNGIIGMTGLLMDTQL----TDEQRR 824

Query: 626  YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
            YA  +  SG  +L I+N++LD SKIE+GK++L     +L +        + + A+E+ I 
Sbjct: 825  YARIVQASGESLLRIINEILDFSKIEAGKLDLETIDFNLQDFCDYLTPPLAMQAHEQGIE 884

Query: 686  IRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVI--LRV 741
               +   ++P  +  D   + QI  N+  NA+ FT +G   I +   H ++++VI    V
Sbjct: 885  FICTLDPDVPLGLRGDSGRLGQILTNLAGNAVKFTSTGKVSIKVKVEHETDKDVILYFSV 944

Query: 742  RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            +DTG+G+   +L      F Q   S      GTGLGL ++K + +   G+  + S   +G
Sbjct: 945  KDTGIGIQREKLGMIFNKFTQADESTTREFGGTGLGLAISKQLTEMMGGRMGVESIQGEG 1004

Query: 802  TLIEII 807
            +     
Sbjct: 1005 SNFWFT 1010



 Score = 97.0 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 69/506 (13%), Positives = 145/506 (28%), Gaps = 34/506 (6%)

Query: 89  IDA-HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
           ID   G + E +E      G    ++  M++ D++ +   +   +I   L      Y ++
Sbjct: 37  IDPNDGAIAEANEAACTFYGYSVEQIRQMKISDINTLSPDEVAKNIQAAL-SGQHQYFES 95

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRG-FGIVHVNRVDNDPRALGKRLDKKFSH 206
                +G      + +++ PI      F G +  + I+H      +              
Sbjct: 96  RHRLADG--QIRDVQISSSPI-----PFKGQKWLYYIIHDITARKNAEKKLHENKSFQRV 148

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD-VLKTEKYPLLTSE 265
           L E       +  +K     Q +             +  +  H           P+    
Sbjct: 149 LLEDINAGVVIVDKKTHTIEQINSQGAKLFGASQDEIIGHVCHNFLCPYDRGNCPITDKG 208

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGT--LQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
                        +       +   +  L    K    ++   +  S      + E    
Sbjct: 209 MDLDRADRILLKADGTLLPILKSVKSIKLDGKEKLLETFIDISDRKSAEERLKKSETNFR 268

Query: 324 ETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
              +      FV    GN+  AN + +   +Y   +      GL+  +  P+     A K
Sbjct: 269 SFFNSIDNFLFVLDVKGNILKANETAIRRLEYSEEEL----NGLNVAMVHPEDRRAEAKK 324

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
            V         I  SA    I    ++   +          + +      +  +      
Sbjct: 325 IV------GEMIEGSADFCPIPVISKSGRYIQVETRVHPGSWDDRPALFCVTKDVT---- 374

Query: 443 NKRKMEIEVMQLCSILEATSD--GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
              K+            A++   GI+ I+  G+ +  NRA  +  GY   + + K     
Sbjct: 375 ---KIRETEELFSKAFHASASLMGISEIDG-GLFIDVNRAFVETSGYTRNEAIGKTSVEL 430

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
                P   N   + +      + +E        ++K          +  + C   T+ D
Sbjct: 431 GLFPNPEDRNRVASMVKESGFIKNMEITIRTKIGDKKFGLFSATRIDVNGNPCLLTTLTD 490

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKS 586
           I++ K  ++ L   K+  +      S
Sbjct: 491 ITDRKSAEDALRENKERLDLALESAS 516



 Score = 83.5 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/284 (13%), Positives = 82/284 (28%), Gaps = 22/284 (7%)

Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
                 E ++      +       +     G +  AN +      Y SV+ I        
Sbjct: 12  QRKKLQESQDRYRAMFENTMCIKMLIDPNDGAIAEANEAACTFYGY-SVEQIRQMKISDI 70

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
              +P     N    +             +R    +        +         +  + +
Sbjct: 71  NTLSPDEVAKNIQAALS-----GQHQYFESRH---RLADGQIRDVQISSSPIPFKGQKWL 122

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGY 487
               I  +    +  ++K+         +LE  + G+ I++++   I   N   +KLFG 
Sbjct: 123 YY--IIHDITARKNAEKKLHENKSFQRVLLEDINAGVVIVDKKTHTIEQINSQGAKLFGA 180

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL--RIII 545
             ++I+      FL               ++           +    +  LL +   +  
Sbjct: 181 SQDEIIGHVCHNFLCPYDRGNCP------ITDKGMDLDRADRILLKADGTLLPILKSVKS 234

Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
            KL        T  DIS+ K  + +L  ++       +   +FL
Sbjct: 235 IKLDGKEKLLETFIDISDRKSAEERLKKSETNFRSFFNSIDNFL 278



 Score = 70.4 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 51/136 (37%), Gaps = 3/136 (2%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRKPFTV 499
            + ++K++    +  ++ E T     +I+  +G I   N A    +GY VE I +   + 
Sbjct: 10  ALQRKKLQESQDRYRAMFENTMCIKMLIDPNDGAIAEANEAACTFYGYSVEQIRQMKISD 69

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH 559
            +   +P  +   +   LS    Q  E     +  + + + +                +H
Sbjct: 70  -INTLSPDEVAKNIQAALS-GQHQYFESRHRLADGQIRDVQISSSPIPFKGQKWLYYIIH 127

Query: 560 DISEWKQEKNKLSHAK 575
           DI+  K  + KL   K
Sbjct: 128 DITARKNAEKKLHENK 143


>gi|218441451|ref|YP_002379780.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7424]
 gi|218174179|gb|ACK72912.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7424]
          Length = 1060

 Score =  372 bits (956), Expect = e-100,   Method: Composition-based stats.
 Identities = 116/821 (14%), Positives = 256/821 (31%), Gaps = 106/821 (12%)

Query: 69   DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM-IGMRLCDVSDILHI 127
            +SE  F        +    +    G + +I+    +  G    ++       +     + 
Sbjct: 276  ESEERFRQAIFEAPLPIIIHA-EDGEILQINWAWSEISGYQPEQIPTLSAWTEKVYGENH 334

Query: 128  DPNNHIGDLL--KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVH 185
                     L    Q    G+ TL   +G  L      A L      R+        +  
Sbjct: 335  QVIRAYIRQLFQLNQRVAEGEFTLTNRQGKTLIWDFYSAPLKTLFDGRKVR----ITMAL 390

Query: 186  VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSS 242
                           ++++S L E+          + +             L  +  + +
Sbjct: 391  DVTQRKQAELALYASERRYSTLSELAPVGIFRSDSQGNCIYVNQKWCQITGLTPEQALGT 450

Query: 243  LTEYYAHKDDV-LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301
                  H +D      ++    S ++    +  F  +                   E   
Sbjct: 451  GWISSLHPEDRQRVITQWNYCLSHQTLFSSEYRFQDLQGEITWVVGQAIAETTPKGEIIG 510

Query: 302  YLSHRNHPSLSAYFDEGENLTPE---------------------------------TVDK 328
            Y+      +   + ++  +                                       ++
Sbjct: 511  YIGTLTDITARKHTEQALSTAKAELEIRVEERTAELKDSNEKLQQELAEKQKTQIILAEQ 570

Query: 329  CPIPFFVYS-------HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
              +    +         G + + N     +  +   + +            P+       
Sbjct: 571  AQLLDLAHDVIMSRDLKGMILFWNQGAEKVYGFSKTEALGHNSHALLKTQFPEPIKTIFT 630

Query: 382  KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
            +       +   I                + +      + +Q  +      I  +    +
Sbjct: 631  RLFADNYWEGELI--------QHKRDGQKIIVASRWVLQRDQRGKPSKILEINNDITARK 682

Query: 442  INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
              +  ++    +  S+ E++  GI + + +G IL TN    ++ G   +D+L + +  F+
Sbjct: 683  QAEEALQQNEAKFRSLCESSPIGIFLTDTQGQILYTNPRYLEIAGANAKDVLGEGWKQFI 742

Query: 502  EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE--KLLSLRIIIKKLPFSS--CYSLT 557
                   +    +  L                K    +  ++              +  T
Sbjct: 743  HPEDHETIISDWSANLGQQQNSFYP-EIRFHHKNGPIRYGNIYTSAIFTENGQLTGFVGT 801

Query: 558  MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
            + DI+E +Q +                K DF++ VSHE+RTPLTAI G   ++    +  
Sbjct: 802  VEDITERRQIE--------------QMKKDFISVVSHELRTPLTAIHGSLGLLAAGVYDN 847

Query: 618  LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
                +  +  +      + ++ +VND+LD+ ++ESG + L  +       + +A+ +++ 
Sbjct: 848  KP-EKGKKMIHIAATQTDRLVRLVNDILDLGRLESGNLQLVMKSCQTATLMQQAVEVMRP 906

Query: 678  YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII---------- 727
             A E ++ +      ++  + AD  ++ Q   N+LSNAI F+P    I++          
Sbjct: 907  KAEENQVTLSV-IPLDV-FVWADFDAIIQTLTNLLSNAIKFSPPNSTIVVKAELMSIDDN 964

Query: 728  ---------STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
                     S     +  V+ +V+D G G+   +L    + F QI  S      GTGLGL
Sbjct: 965  IKVWQKKTPSLALLPSPYVLFQVQDQGRGIPVDKLSLIFEKFQQIDTSDSREKGGTGLGL 1024

Query: 779  PLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819
             + + +++ + G+ +  S   KG++     P+     P DC
Sbjct: 1025 AICRTIIEQHKGQIWAESVLGKGSIFYFTLPV-----PPDC 1060



 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 41/363 (11%), Positives = 101/363 (27%), Gaps = 31/363 (8%)

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEI 362
                  L     E E    + + + P+P  ++   G +   N ++  ++ Y+      +
Sbjct: 263 EIEERKQLEHLLRESEERFRQAIFEAPLPIIIHAEDGEILQINWAWSEISGYQPEQIPTL 322

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
           +     +                L++ ++        L   Q     +L   F       
Sbjct: 323 SAWTEKVYGE--NHQVIRAYIRQLFQLNQRVAEGEFTLTNRQ---GKTLIWDFYSAPLKT 377

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
            F     +  +  +    +  +  +     +  ++ E    GI   + +G  +  N+   
Sbjct: 378 LFDGRKVRITMALDVTQRKQAELALYASERRYSTLSELAPVGIFRSDSQGNCIYVNQKWC 437

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
           ++ G   E  L   +   L       +       LS   +            + ++  + 
Sbjct: 438 QITGLTPEQALGTGWISSLHPEDRQRVITQWNYCLSH--QTLFSSEYRFQDLQGEITWVV 495

Query: 543 ----IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
                          Y  T+ DI+  K  +  LS AK   E     ++  L   S+E   
Sbjct: 496 GQAIAETTPKGEIIGYIGTLTDITARKHTEQALSTAKAELEIRVEERTAELKD-SNE--- 551

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR--SGNLVLDIV-------NDLLDISK 649
                    + +  ++   +      +  +          +  ++         +   SK
Sbjct: 552 ------KLQQELAEKQKTQIILAEQAQLLDLAHDVIMSRDLKGMILFWNQGAEKVYGFSK 605

Query: 650 IES 652
            E+
Sbjct: 606 TEA 608


>gi|188581744|ref|YP_001925189.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium populi BJ001]
 gi|179345242|gb|ACB80654.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium populi BJ001]
          Length = 853

 Score =  372 bits (956), Expect = e-100,   Method: Composition-based stats.
 Identities = 170/783 (21%), Positives = 311/783 (39%), Gaps = 75/783 (9%)

Query: 34  FETEKSKKENPC--HDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDA 91
           FE   +K E P       +          + S    +++             R  W  DA
Sbjct: 137 FEAGPAKAEPPSQRASQPDAQPEASTPAPAPSPAMEMEAGPDQRETTADLPARLIWRSDA 196

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151
            G L ++S   P      A  ++G     ++    I+    + + L  + T+     L  
Sbjct: 197 EGVLTQVSRTHPDL----AEALLGQSWAMLAIDGVIEGA-ALTEALSARRTFRSVPLL-- 249

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
           + G      ++++  P      +FSGF GF I+             + +++         
Sbjct: 250 VRGRAYEHALEISGAPAGRATEDFSGFGGFAIL--------GERSPRAIEE--------- 292

Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271
              +  E    D      P     +++                      L  +E ++  E
Sbjct: 293 DAAAETESGGSDAPRDAEPVGGPDVED---------------------GLSVNEHAAFRE 331

Query: 272 QEDFHTIN-LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330
                 +      + +       +++  S           +            E ++  P
Sbjct: 332 VARILGLRFAPDLSAEAVEAGSADSATVSSVTPFPTPPGRIGESEARARAALTELLESLP 391

Query: 331 IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390
           +   VY    + +A+ +FL LT Y  +  +  A GL+ L       +     PV   +S+
Sbjct: 392 LGVLVYRGSEILFASRAFLDLTGYPDLSALREA-GLAHLFRGLPPGEREIAGPVPFAQSE 450

Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450
              +A       + W    +         +            ++   V     + + E  
Sbjct: 451 GGTVALLVDRAGLVWEGAPA---------ELCLARAAPAAAALQLPAVPPNAARSRAEK- 500

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
                 +LE+  +G+  ++ EG ++  N + ++L     ++++   F       +   + 
Sbjct: 501 ------VLESLEEGVVTLDAEGRVVGLNPSAAELVHAHPKEVVGGRFADLFAPESLPALE 554

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL--PFSSCYSLTMHDISEWKQEK 568
             +T+               G T      +LR+ I +L    +  Y  ++ +I + +   
Sbjct: 555 TAVTDSRRSGAS-----EIHGVTPRTGAAALRLRIARLLGEDAPGYCASLREIRDDEPAL 609

Query: 569 NKL--SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
                   ++ +E E+  K++ LARVS EIR  L AI+  +E++ + RF      R   Y
Sbjct: 610 PAAGEPARREASEAEAEWKANALARVSREIRPSLNAILSLTEMMLSDRFDRADAERLEAY 669

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
              +  SG  +  +++DL D+++I++G+  L F  ++L+E VS  I+  Q  A   RI++
Sbjct: 670 LREVRLSGGRIAGLIDDLRDLAEIQAGRGKLTFAELALNELVSSCIAAQQAQAARDRIVL 729

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
           RTS A ++P + AD+RS++Q  L +L NAI  T +GGQ+I+STT      + LRVRDTG 
Sbjct: 730 RTSLAPDLPAMRADMRSIRQATLTVLGNAIRVTEAGGQVIVSTTRAERGGIALRVRDTGT 789

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           GMT  EL  A++PF +   +    GE  G GL L KA+V+AN G+F I S   +GTL+E+
Sbjct: 790 GMTEDELMGALEPF-RADIAPAAEGEERGFGLTLTKALVEANRGRFRITSRKDEGTLVEM 848

Query: 807 IFP 809
           +FP
Sbjct: 849 LFP 851


>gi|312130024|ref|YP_003997364.1| multi-sensor hybrid histidine kinase [Leadbetterella byssophila DSM
           17132]
 gi|311906570|gb|ADQ17011.1| multi-sensor hybrid histidine kinase [Leadbetterella byssophila DSM
           17132]
          Length = 1076

 Score =  372 bits (956), Expect = e-100,   Method: Composition-based stats.
 Identities = 144/801 (17%), Positives = 273/801 (34%), Gaps = 87/801 (10%)

Query: 72  NTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN 131
             FV +     + F   ++  G    ++    KT+G    ++ G ++ D       +   
Sbjct: 16  EDFVENTSE--INFI--LNQTGEFIFVNSAFVKTLGYQKEEVRGKKITDYLHPQFKEEII 71

Query: 132 HIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSR-NREFSGFRGFGIVHVNRVD 190
                L+     +  T +       L   + L     YS  N     +R   I+    + 
Sbjct: 72  KGILGLQLGEHLHDTTLVLRN---KLKKRVYLLGDVHYSEINHGLRAYRF--ILRDITIR 126

Query: 191 NDPRALG-------------KRLDKKFSHLH-----EIKKGHSSVEKEKYDIFSQQSPP- 231
               A               + L+   + +H      I   +  V    Y   S   P  
Sbjct: 127 RRAEAAQNLYFAIAQSNLNTRSLEDFLAQVHLNLKKNIYANNFFVAVFDYKDSSINFPYH 186

Query: 232 ----------------PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDF 275
                            +  ++  +        ++ ++ +  +   L   ES LP  +  
Sbjct: 187 VDEFFDTGQNYLKRRLGNGLIEYSLLQKKPLVLNRQELEELIEREKLFIYESILPAVQIL 246

Query: 276 HTINLNQYTKKQYFGTLQNNSK------------ESFEYLSHRNHPSLSAYFDEGENLTP 323
             + +N+           ++               S +           A  +       
Sbjct: 247 VPLKVNEEVVGVIGIKSYSDENKFSSNDLELLQFVSGQIAMTMERKRAEADLELQTARLK 306

Query: 324 ETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK-----LSD 377
              D      +  +    L   N ++  +        +     ++T ++          D
Sbjct: 307 ALFDSSSHLLWTVNTRRQLSSMNRNYYNIV----YSQLGEEPKINTSIERYGWKLFNPDD 362

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
              I+                 LH  Q N         +    + +  E    +GI    
Sbjct: 363 KPMIREKYNLAFQGKPQYFE--LHWGQKNGGPDWYEFHLNPIISGENGEVEEVSGIARNI 420

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
            + +     ++    +  +I+E+  D     +  G I   + +V K  GY  E+++ +  
Sbjct: 421 TENKKALLDLQKSENKFRNIIESFIDIYYRSDLAGNITMISPSVYKHTGYREEEVIHQKV 480

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---- 553
             F         +  +  +L                K+  +    + I+ +         
Sbjct: 481 DQFF--EDVVDSSKNIKTLLKSGN--ITNYEVRVKRKDGSIRQFMLNIRMIKNEKGTPIE 536

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
                 D++E  +  ++L  AK+ AE     K  FLA +SHEIRTP+  IIG  +V+   
Sbjct: 537 VEGVARDVTELLRSADELKKAKEEAEHLLKVKEQFLANMSHEIRTPMNGIIGMIDVLNET 596

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
                 +    EY N I  S   +L I+ND+LD+SK+E+G+MN+  +P  L E +   ++
Sbjct: 597 EL----DKSQREYVNTIRNSSETLLTILNDILDLSKLEAGQMNVEKKPFDLKEMLKNLVA 652

Query: 674 LVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
           L +  A E   L++  +   + P I+ D   + QI  N+ SNAI FT   G +II     
Sbjct: 653 LFKQKAAETNNLLKFEWDPKVHPYIIGDRIRLLQILSNLTSNAIKFT-QNGNVIIRIQWE 711

Query: 733 SNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
             +E    +   V DTG+G++    +K    F Q+  S +    GTGLGL ++K +V+  
Sbjct: 712 GQDEKTQFLRFEVADTGIGISEENQKKLFTSFQQLDISTKKAFGGTGLGLVISKQLVEIM 771

Query: 789 MGKFYIFSTPAKGTLIEIIFP 809
            G+  + S   +G++     P
Sbjct: 772 GGEIGLTSKLGEGSVFWFTLP 792



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 53/142 (37%), Gaps = 3/142 (2%)

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
           L   +E TS+   I+N+ G  +  N A  K  GY  E++  K  T +L       +   +
Sbjct: 15  LEDFVENTSEINFILNQTGEFIFVNSAFVKTLGYQKEEVRGKKITDYLHPQFKEEIIKGI 74

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISEWKQEK--NK 570
             +   +       +     K+   L   +   ++      Y   + DI+  ++ +    
Sbjct: 75  LGLQLGEHLHDTTLVLRNKLKKRVYLLGDVHYSEINHGLRAYRFILRDITIRRRAEAAQN 134

Query: 571 LSHAKKIAEKESSHKSDFLARV 592
           L  A   +   +    DFLA+V
Sbjct: 135 LYFAIAQSNLNTRSLEDFLAQV 156


>gi|229076090|ref|ZP_04209058.1| hypothetical protein bcere0024_42870 [Bacillus cereus Rock4-18]
 gi|228706953|gb|EEL59158.1| hypothetical protein bcere0024_42870 [Bacillus cereus Rock4-18]
          Length = 571

 Score =  372 bits (956), Expect = e-100,   Method: Composition-based stats.
 Identities = 93/388 (23%), Positives = 181/388 (46%), Gaps = 26/388 (6%)

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           +           +   + +  +E E    +L +++E    G+ +I+  G I   NR+  +
Sbjct: 200 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 259

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542
            F    E+ L + +           +   + EI   +++   + +  LG  ++   +   
Sbjct: 260 TFHVTDEEYLDRLYYESFHHT---EIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 316

Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
            II          L  HDI+E K+ +                + DFLA VSHE++TP+T+
Sbjct: 317 PIIGTNHEWKGIVLVFHDITELKRLE--------------QMRKDFLANVSHELKTPITS 362

Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           I GFSE + +   G + N ++ E + + I +    +  ++ DLLD+SKIE     L+ E 
Sbjct: 363 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMET 419

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           V +   + +   ++   A EK I ++ +    +  ++ D   +KQI +N+++NAI +TP+
Sbjct: 420 VDMKGLLEDIHMVLDNKAGEKEISLQVNVLKRV-SVIGDPGRLKQIFINLINNAIVYTPA 478

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           GG + +           ++V DTG+G++  E+ +  + F ++  ++     GTGLGL + 
Sbjct: 479 GGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIV 537

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           K +V+A+ G   + S   +GT   ++ P
Sbjct: 538 KHLVEAHHGTITVDSEVGEGTTFTVVLP 565


>gi|229105216|ref|ZP_04235865.1| hypothetical protein bcere0019_43500 [Bacillus cereus Rock3-28]
 gi|228678142|gb|EEL32370.1| hypothetical protein bcere0019_43500 [Bacillus cereus Rock3-28]
          Length = 571

 Score =  372 bits (956), Expect = e-100,   Method: Composition-based stats.
 Identities = 93/388 (23%), Positives = 181/388 (46%), Gaps = 26/388 (6%)

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           +           +   + +  +E E    +L +++E    G+ +I+  G I   NR+  +
Sbjct: 200 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 259

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542
            F    E+ L + +           +   + EI   +++   + +  LG  ++   +   
Sbjct: 260 TFHVTDEEYLDRLYYESFHHT---EIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 316

Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
            II          L  HDI+E K+ +                + DFLA VSHE++TP+T+
Sbjct: 317 PIIGTNHEWKGIVLVFHDITELKRLE--------------QMRKDFLANVSHELKTPITS 362

Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           I GFSE + +   G + N ++ E + + I +    +  ++ DLLD+SKIE     L+ E 
Sbjct: 363 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMET 419

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           V +   + +   ++   A EK I ++ +    +  ++ D   +KQI +N+++NAI +TP+
Sbjct: 420 VDMKGLLEDIHMVLDNKAGEKEISLQVNVLKRV-SVIGDPGRLKQIFINLINNAIVYTPA 478

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           GG + +           ++V DTG+G++  E+ +  + F ++  ++     GTGLGL + 
Sbjct: 479 GGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIV 537

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           K +V+A+ G   + S   +GT   ++ P
Sbjct: 538 KHLVEAHHGTITVDSEVGEGTTFTVVLP 565


>gi|298529159|ref|ZP_07016562.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
            thiodismutans ASO3-1]
 gi|298510595|gb|EFI34498.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
            thiodismutans ASO3-1]
          Length = 1547

 Score =  372 bits (956), Expect = e-100,   Method: Composition-based stats.
 Identities = 123/764 (16%), Positives = 246/764 (32%), Gaps = 55/764 (7%)

Query: 85   FTWNIDAHGYLKEISEELPKTIGNYA-FKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTW 143
            F +  D +      S+ L     +    +MIG    +V         N     +  +   
Sbjct: 323  FIYYKDINSRFIFCSQTLADITNHAHWREMIGKHDFEVFPHDTATIYNEEEKPVFNEGKP 382

Query: 144  YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                     + T     +     P++   ++ SG   FGI              +     
Sbjct: 383  ILNRVNPFYKETGETGYVQTNKWPVFDDKQKVSGI--FGISRDITEHKKAVEDLENERNL 440

Query: 204  FSHLH-------EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256
            F+             +G  +V+    ++       P     +        +    + +  
Sbjct: 441  FAAGPVFTMEWSPEMQGRWTVKFASSNVEQILGYSPEEMQHSNFWYTEIIHPDDVEGIVN 500

Query: 257  EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
            E    + +   S        T          +   +++         S+    S     +
Sbjct: 501  ELRHNIANYIDSFETSYRLRTKAGYYLWTYDFTLLVRDEEGALTGIRSYMYDQSARKQAE 560

Query: 317  EGENLTPETVD--------KCPIP----FFVYSHG--NLFYANPSFLLLTKYKSVDDIEI 362
            E   +  E ++          P+           G     + +  FL LT          
Sbjct: 561  EALRIAEERLEKTAYDLTENIPVGTYTMVQPPEGGMARFAFMSSQFLELTGLT-----RE 615

Query: 363  AGGLSTLLDAPKLSDNNAIKPVMLYRSD-RTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                  L     +  ++    V L                 +       +     P   A
Sbjct: 616  KAASDPLKAFACVHPDDFDAWVALNAKAFAEKTPFFGETRVVAHGEVRWVTAESKPRTLA 675

Query: 422  NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII----NREGIILST 477
            +         G+  +  D +  +  +   + +   ++   S G+ +     +        
Sbjct: 676  DGT---TVWEGVLADITDRKRAEEALSETLGRFNDLVVYMSVGVYVFWIRADGRQEFEYV 732

Query: 478  NRAVSKLFGYPVEDILRKP-FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
            +     +     ED+L        +           L +  + + ++   +  +    E 
Sbjct: 733  SDGWCAMNHLRREDVLANSAVAFNMIHPEELENFILLNQEAAREKKRFHWEGRVVINGEV 792

Query: 537  KLLSLRIIIKKLPFSS-CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
            +   +             +     DI+E  Q++ +L  A   A+  S  KS+FLA +SHE
Sbjct: 793  RFALVESNPVFFDNGDCRWFGIQQDITERVQDQERLRIATMQADAASRAKSEFLANMSHE 852

Query: 596  IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
            IRTP+  +IG + ++         N     YA  +  SG  +L ++ND+LD SKIESGK+
Sbjct: 853  IRTPMNGVIGMTGLLLETDL----NETQRRYAETVRSSGQALLALLNDILDFSKIESGKL 908

Query: 656  NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSN 714
             L      L + +    S++   A EK +    S   ++P  ++ D   ++QI  N++ N
Sbjct: 909  ELEALNFDLRDTLDNFASMMAFKAEEKGLEFICSADPDVPDNLIGDPGRIRQILTNLVGN 968

Query: 715  AIHFTPSGGQIIISTTHTSNE----------EVILRVRDTGVGMTNYELEKAMKPFGQIP 764
            A+ FT  G ++++  +   +            +   VRDTG+G+   ++    + F Q+ 
Sbjct: 969  AVKFTERG-EVVVRVSIQESGVRSQESQEFCMLHFSVRDTGIGIPADKVGDLFQSFSQVD 1027

Query: 765  NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
             S   +  GTGLGL ++K + +   G   + S   +GT      
Sbjct: 1028 ASITRKFGGTGLGLAISKQLAEMMGGDVGVDSVEGQGTTFWFTI 1071


>gi|119492436|ref|ZP_01623757.1| hybrid sensory kinase [Lyngbya sp. PCC 8106]
 gi|119453102|gb|EAW34271.1| hybrid sensory kinase [Lyngbya sp. PCC 8106]
          Length = 885

 Score =  372 bits (956), Expect = e-100,   Method: Composition-based stats.
 Identities = 121/635 (19%), Positives = 247/635 (38%), Gaps = 31/635 (4%)

Query: 191 NDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP----PHLRMKNKVSSLTE- 245
                     + +F  L  +     +            S       + R +       + 
Sbjct: 16  KQTETALLESENRFRDLFHLAPIGMAEVSLGGQFLEVNSSFCEFIGYSRKELMQRGFNQI 75

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINL----NQYTKKQYFGTLQNNSKESFE 301
            + H  D+       L+  E      ++ +                   T+ N      +
Sbjct: 76  THPHDRDMSMNYFSRLIQGEFKQYNLEKRYRHKEGHWVYGILHCYLRLDTVGNPFSVITQ 135

Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY--ANPSFLLLTKYKSVDD 359
                 +  +     + +      +D  P   F +   NL +   N  +    + +S + 
Sbjct: 136 IQDISEYKKIEEDLKQQKEYLRLVLDNIPQQVF-WKDTNLVFKGCNKKWAEYAQLESAES 194

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
           +        L    ++++    +   +  S    +   A       +      +      
Sbjct: 195 VIGKTDYD-LFKNWEVAEFYRRQDRRVMTSKEPELNVIAPKQKPTTDGRQI-WLDISRVP 252

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
             +     +   G+  +  + +    K+ +   Q    ++ + D +   +       TN 
Sbjct: 253 MLDTDGYVIGIIGVLEDITEQKEIDEKLRLT--QFS--IDKSRDYVLFTDINARFFYTNE 308

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
           A +K  GY  ++ L+          + +  +     +       +    ++   K  + +
Sbjct: 309 AATKTLGYSRDEFLQMQVKDIDPNASENQWSISWENLRQQG---SFTFESIHKMKTGEHI 365

Query: 540 SLRIIIKKLPFSSCY--SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
           S+ I +  L +++       + DISE K  +  L  AK+ AE  +  KS+FLAR+SHE+R
Sbjct: 366 SVEITLSYLEYNNKEYGCAVVRDISERKHTEIVLQQAKEAAEAANRSKSEFLARMSHELR 425

Query: 598 TPLTAIIGFSEVIKNQ--RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           TPL AI+GF++++     R   +    + E+   I RSG  +L+++ND+L++SKIE+G++
Sbjct: 426 TPLNAILGFTQLMNRDLKRKQSVLLQDHQEHLEIIGRSGEHLLNLINDVLEMSKIEAGQI 485

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSN 714
           +L+     L + +     +++L A  K + +     +++P+ I  D   ++Q+ +N+L N
Sbjct: 486 SLNSAHFDLLKLLHCLRDMLELKAQSKGLKLLFEIDSDVPQYIQTDESKLRQVLINLLGN 545

Query: 715 AIHFTPSGGQIIISTTHTSN---EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           AI FT +G  II+ T    N     +I  V DTG G++  EL+   KPF Q    ++ + 
Sbjct: 546 AIKFTDAG-CIILRTKTVKNSKANRLIFEVEDTGYGISPEELQYVFKPFIQTETGRKSQ- 603

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           +GTGLGL +++  +    GK  + S   +GT    
Sbjct: 604 QGTGLGLSISQKFIKLMGGKITVSSQLGQGTCFRF 638



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 48/470 (10%), Positives = 121/470 (25%), Gaps = 40/470 (8%)

Query: 63  SNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS 122
           + T  L+SEN F        +     +   G   E++    + IG    +++      ++
Sbjct: 18  TETALLESENRFRDLFHLAPIG-MAEVSLGGQFLEVNSSFCEFIGYSRKELMQRGFNQIT 76

Query: 123 DILHIDPNNH-IGDLLKRQ-NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRG 180
                D + +    L++ +   +  +      EG   +V   L              F  
Sbjct: 77  HPHDRDMSMNYFSRLIQGEFKQYNLEKRYRHKEGH--WVYGILHCYLRLDTVGNP--FSV 132

Query: 181 FGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFS---QQSPPPHLRMK 237
              +             K+  +    + +        +           + +    L   
Sbjct: 133 ITQIQDISEYKKIEEDLKQQKEYLRLVLDNIPQQVFWKDTNLVFKGCNKKWAEYAQLESA 192

Query: 238 NKVSSLTEYYAHKDDVL----KTEKYPLLTSEESSLPEQEDFHTI--NLNQYTKKQYFGT 291
             V   T+Y   K+  +    + +   ++TS+E  L           +  Q         
Sbjct: 193 ESVIGKTDYDLFKNWEVAEFYRRQDRRVMTSKEPELNVIAPKQKPTTDGRQIWLDISRVP 252

Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLL 350
           + +        +      +     DE   LT  ++DK          +   FY N +   
Sbjct: 253 MLDTDGYVIGIIGVLEDITEQKEIDEKLRLTQFSIDKSRDYVLFTDINARFFYTNEAATK 312

Query: 351 LTKYKSVDDIE-IAGGLS--------TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401
              Y   + ++     +         ++         +     +        I+    L 
Sbjct: 313 TLGYSRDEFLQMQVKDIDPNASENQWSISWENLRQQGSFTFESIHKMKTGEHISVEITLS 372

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
            +++N +           +       + Q     E  +   ++    +    L + L A 
Sbjct: 373 YLEYNNKEYGCAVVRDISERKHTEIVLQQAKEAAEAANRSKSEFLARMSHE-LRTPLNAI 431

Query: 462 -------------SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
                           + + + +  +    R+   L     + +      
Sbjct: 432 LGFTQLMNRDLKRKQSVLLQDHQEHLEIIGRSGEHLLNLINDVLEMSKIE 481


>gi|119776261|ref|YP_929001.1| sensory box histidine kinase/response regulator [Shewanella
           amazonensis SB2B]
 gi|119768761|gb|ABM01332.1| multi-sensor hybrid histidine kinase [Shewanella amazonensis SB2B]
          Length = 1236

 Score =  372 bits (956), Expect = e-100,   Method: Composition-based stats.
 Identities = 130/676 (19%), Positives = 228/676 (33%), Gaps = 49/676 (7%)

Query: 156 NLYVPIDLAALP---IYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF---SHLHE 209
           +  +P +L +LP   ++         R    +H   + N P  L    D          +
Sbjct: 294 SQKIPSELHSLPESELFDAQGGII--RNGYYIHSVALHNAPWRLLYIQDVDDLFQESWDK 351

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
           ++     V      + +           +  S L  +        +     +    E   
Sbjct: 352 LQLTFILVVLALSVLVTIVHWQTRRSFVSPASRLLSHLEGCSQQPRAVPEKITPGWEPWF 411

Query: 270 PEQEDFHTINLNQY-TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
                    N        +    L        E L          Y      L    +D 
Sbjct: 412 QLVSRIFEENQQYTKHLAEQNKRLDKLVARRTERLKETTERREREYA-----LLRSLLDS 466

Query: 329 CPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
            P    F    G+    N +   +  +   + I ++     L    + S   A    +L 
Sbjct: 467 IPEAIVFKDKEGHYLGCNKAAERMLGFSEAEMIGLSS--EELTSPEQGSRIRAEDEQVLT 524

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
                       L          + +  +     N+  E M    +  +      +  ++
Sbjct: 525 ERKPLRYQEKIELA------GKPVLLDTLKLPFYNRRGELMGLIAVWRDVTREYESAEQL 578

Query: 448 EIEVMQLCSILEATSDGIA--IINREGIILSTNRAVSKLFGYPVEDILR--KPFTVFLEQ 503
            +   +    ++A  DG+    ++ E II   N A   + GY   +           +  
Sbjct: 579 RLSEERYHLAMDAVEDGLWDWYLDSEQII--CNPAYYSMLGYKTNEFPALLSTIDSLIHP 636

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR-----IIIKKLPFSSCYSLTM 558
           +    +  Y  + L   +    E       K  +   +      +   +         T 
Sbjct: 637 DDRIRVQEYREQYLKDPI-GAYEIEFRMRAKTGQYHWMLSRGRVVEFTQDAQPKRMVGTH 695

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            DI+  K  +  L  AK+ AE  + +KS+FLA +SHEIRTP+ AIIG  ++         
Sbjct: 696 KDITRHKSNEVALLEAKQDAELANLYKSEFLANMSHEIRTPMNAIIGMLQLAGRTSL--- 752

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
              +  +Y +    S   +L I+ND+LD SKIE+GK+ L      LD+ +  ++ L  L 
Sbjct: 753 -TEQQKDYLDKASFSAQSLLRIINDILDFSKIEAGKLELEKVAFPLDKVLDHSLDLNALR 811

Query: 679 ANEKRILIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE- 736
           A EK I +      +    +  D   + Q+ +N+LSNA+ FT +G    I        E 
Sbjct: 812 AQEKGIELLLYAPVSAGIMLKGDPLRLGQVLINLLSNAVKFTQNG---EIELGCEDVGER 868

Query: 737 -----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
                +   VRDTG+G++  + +K    F Q   S   +  GTGLGL ++K +V    G 
Sbjct: 869 DHRITLKFWVRDTGIGISREQQDKLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGT 928

Query: 792 FYIFSTPAKGTLIEII 807
             + S P  G+     
Sbjct: 929 MQVESEPGVGSTFSFT 944



 Score = 57.3 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 81/639 (12%), Positives = 186/639 (29%), Gaps = 49/639 (7%)

Query: 79   IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL-HIDPNNHIGDLL 137
                    +  D  G+    ++   + +G    +MIG+   +++              +L
Sbjct: 465  DSIPEAIVFK-DKEGHYLGCNKAAERMLGFSEAEMIGLSSEELTSPEQGSRIRAEDEQVL 523

Query: 138  KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN-RVDNDPRAL 196
              +     +     IE     V +D   LP Y+R  E  G     +     R       L
Sbjct: 524  TERKPLRYQE---KIELAGKPVLLDTLKLPFYNRRGELMGL--IAVWRDVTREYESAEQL 578

Query: 197  GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK----NKVSSLTEYYAHKDD 252
                ++    +  ++ G      +   I    +    L  K      + S  +   H DD
Sbjct: 579  RLSEERYHLAMDAVEDGLWDWYLDSEQIICNPAYYSMLGYKTNEFPALLSTIDSLIHPDD 638

Query: 253  VLKTEKYPL--LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310
             ++ ++Y    L     +   +          +         +    E  +    +    
Sbjct: 639  RIRVQEYREQYLKDPIGAYEIEFRMRAKTGQYHWM-----LSRGRVVEFTQDAQPKRMVG 693

Query: 311  LSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
                    ++     ++          + + F AN S  + T   ++  +    G ++L 
Sbjct: 694  THKDITRHKSNEVALLEAKQDAELANLYKSEFLANMSHEIRTPMNAIIGMLQLAGRTSLT 753

Query: 371  DAPKLS-DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
            +  K   D  +     L R     +  S          + +  +  +     +       
Sbjct: 754  EQQKDYLDKASFSAQSLLRIINDILDFSKIEAGKLELEKVAFPLDKVLDHSLDLNALRAQ 813

Query: 430  QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
            + GIE            ++ + ++L  +L           + G I        +  G   
Sbjct: 814  EKGIELLLYAPVSAGIMLKGDPLRLGQVLINLLSNAVKFTQNGEIEL----GCEDVGERD 869

Query: 490  EDILRKPFTVF----LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
              I  K +       + +     +     +       +      LG +  + L+S+    
Sbjct: 870  HRITLKFWVRDTGIGISREQQDKLFDAFAQA-DGSTTRKYGGTGLGLSISKHLVSMMGGT 928

Query: 546  KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
             ++        T      ++  +        + E+ +S ++  +         P TA+  
Sbjct: 929  MQVESEPGVGSTFSFTVSFEIAEEAKVVPMVVPERLASLRTLVVDD------NP-TALQI 981

Query: 606  FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
            +S V+++  F         E      +     +D+V  LLD    E   +        + 
Sbjct: 982  YSSVMRDFHFEVETASTGAEAL---YKLCKQQVDLV--LLDWMMPEMDGIQ-------VI 1029

Query: 666  EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704
            +A+ E ++     A    I+I T++A    ++  D   V
Sbjct: 1030 DAIDEMVAE-GKLAARPVIIIMTAYAAEPLKVDLDSDRV 1067


>gi|313683144|ref|YP_004060882.1| multi-sensor hybrid histidine kinase [Sulfuricurvum kujiense DSM
           16994]
 gi|313156004|gb|ADR34682.1| multi-sensor hybrid histidine kinase [Sulfuricurvum kujiense DSM
           16994]
          Length = 1421

 Score =  372 bits (956), Expect = e-100,   Method: Composition-based stats.
 Identities = 112/544 (20%), Positives = 215/544 (39%), Gaps = 48/544 (8%)

Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTK 353
           +   +  L               E        K   P  +    +G +   N +      
Sbjct: 429 TGVIWSVLDISERKHAEIELRNSEEKFRSMFMKQDAPMLLLDPENGVILDVNHAAEKFYG 488

Query: 354 YKSVDD----IEIAGGL--STLLDAPKLSDNNAIKPVML--YRSDRTCIAASARLHTIQW 405
           Y + +     I+    L    L +  + +        +           +          
Sbjct: 489 YSADEMEKMTIDQINTLSKEALKNEMESALAEERNFFVFKHRLKSGEIKSVEVHSSPFLL 548

Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465
                L                     I  +       + K+        ++L+ ++ GI
Sbjct: 549 GNRRVL-------------------FSIVFDITKREKAEEKLLAVSSLNKALLDNSAVGI 589

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF-LEQNTPSVMNHYLTEILSLDLRQT 524
            + + E +I+ T++   ++FGY  ++++ K F +  + + +          +LS      
Sbjct: 590 FLASPERMIIETSKRAYEMFGYSADELIGKSFRIIHVSEESFEDFGTQYQNLLSDGRT-- 647

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKE 581
                    K    +   +    L  S        T+ DI+E K  +  +  AK+ AE+ 
Sbjct: 648 -NIEYPFIKKNGVKIWCSVSGTPLDESDLSKGIIWTLQDITERKAAERAMLIAKEQAEEA 706

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
           +  KS FLA +SHEIRTP+ AI+G S+V+ +    P    +  ++   I  S  ++L I+
Sbjct: 707 NISKSRFLANMSHEIRTPMNAILGLSQVMLDSDMAP----KEKDFLLKIHSSSKMLLGII 762

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LAD 700
           ND+LD SKIE+ K+ L  +  +L+  +++   L    A E  + +     +++P I + D
Sbjct: 763 NDILDYSKIEANKLELEHKNFNLENVLAQLKVLFTQSAAEHGLELYFHKKSDVPEIIVGD 822

Query: 701 LRSVKQIALNILSNAIHFTPSGGQ---IIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757
              + Q+  N+LSNA+ FT  G     I +   H +   +   + DTG+G+++ ++ K  
Sbjct: 823 ELRLDQVLTNLLSNALKFTHHGTVTLAIELKERHENRAIIGFSLTDTGIGISDEDISKLF 882

Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL----YDT 813
           +PF Q  +S   +  GTGLGL ++K +V+A  G+  + S   +G+       +    ++ 
Sbjct: 883 QPFNQADSSMTRKYGGTGLGLAISKRLVNAMGGELSLSSVKGEGSTFSFDIDVEVVSWEQ 942

Query: 814 SHPH 817
           SH H
Sbjct: 943 SHEH 946



 Score = 74.3 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 30/204 (14%), Positives = 74/204 (36%), Gaps = 14/204 (6%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +    K+ ++   L ++ E  + GI ++++   I+++N+    + GY  E+++ K  +  
Sbjct: 317 KKMTYKLSLQKQFLDNVFENNAAGIFVVDQNRNIITSNQRFCDILGYTKEELIGKNASFL 376

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR---IIIKKLPFSSCYSLT 557
               +      +    L     +  +   L   K  K +      + I+    ++    +
Sbjct: 377 --HVSDESYLAFAPHFLKAKNGERSKVEYLIKDKNGKEVLCEFLGMSIEIDKNNTGVIWS 434

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSD--FLARVSHEIRTPLTAIIGFSEVIKNQRF 615
           + DISE K  + +L ++ +   +    K D   L      +  P   +I        + +
Sbjct: 435 VLDISERKHAEIELRNS-EEKFRSMFMKQDAPML------LLDPENGVILDVNHAAEKFY 487

Query: 616 GPLGNPRYIEYANYIDRSGNLVLD 639
           G   +       + I+      L 
Sbjct: 488 GYSADEMEKMTIDQINTLSKEALK 511



 Score = 70.8 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 37/376 (9%), Positives = 96/376 (25%), Gaps = 22/376 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + +D +  +   ++     +G    ++IG        +            LK +N    
Sbjct: 341 IFVVDQNRNIITSNQRFCDILGYTKEELIGKNAS-FLHVSDESYLAFAPHFLKAKNGERS 399

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           K      +     V  +   + I   ++  +G      V             +  ++KF 
Sbjct: 400 KVEYLIKDKNGKEVLCEFLGMSI-EIDKNNTGVIW--SVLDISERKHAEIELRNSEEKFR 456

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
            +   +     +   +  +    +            +        D +    K  L    
Sbjct: 457 SMFMKQDAPMLLLDPENGVILDVNHAAEKFYGYS--ADEMEKMTIDQINTLSKEALKNEM 514

Query: 266 ESSLPEQEDF-----HTINLNQYTKKQYFGT--LQNNSKESFEYLSHRNHPSLSAYFDEG 318
           ES+L E+ +F        +    + + +     L N                        
Sbjct: 515 ESALAEERNFFVFKHRLKSGEIKSVEVHSSPFLLGNRRVLFSIVFDITKREKAEEKLLAV 574

Query: 319 ENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
            +L    +D   +  F+ S    +   +     +  Y + + I  +     ++   + S 
Sbjct: 575 SSLNKALLDNSAVGIFLASPERMIIETSKRAYEMFGYSADELIGKSF---RIIHVSEESF 631

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
            +         SD          +         +  +       ++   +        + 
Sbjct: 632 EDFGTQYQNLLSDGRT----NIEYPFIKKNGVKIWCSVSGTPL-DESDLSKGIIWTLQDI 686

Query: 438 VDTRINKRKMEIEVMQ 453
            + +  +R M I   Q
Sbjct: 687 TERKAAERAMLIAKEQ 702


>gi|218438074|ref|YP_002376403.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
 gi|218170802|gb|ACK69535.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
          Length = 1068

 Score =  372 bits (956), Expect = e-100,   Method: Composition-based stats.
 Identities = 102/400 (25%), Positives = 193/400 (48%), Gaps = 20/400 (5%)

Query: 422 NQFPENMPQNGIEPEDVDTRINKRK-MEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
            +    +   G      + R   ++ ++    +   IL+  ++ I  I+    I   N A
Sbjct: 436 KEEVNLLKLIGEFIAIAEARQEAKEALQESEARFAGILDNANEAIISIDESHHIRLFNHA 495

Query: 481 VSKLFGYPVEDILRKPFTVFLEQ---NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
             K+FGY  ++++ KPF + L      +         +           +   G  K+E+
Sbjct: 496 AEKIFGYGGDEVMGKPFDLLLPSRYTESHRHYLELFEQGDETAREMGGREPVFGRRKDER 555

Query: 538 LLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
                + I KL       ++  + DI+E KQ +  L  AK+ A+  +  KS+FLA +SHE
Sbjct: 556 EFLAEVSISKLNQRGKTIFTAIVRDITERKQAEEALKKAKEAADNANRAKSEFLASMSHE 615

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           +RTPL AI+GF++V+    +            + I RSG  +LD++ND+L++SKIE+G+ 
Sbjct: 616 LRTPLNAILGFTQVLGRNSY---LTEEDKTNLDIISRSGEHLLDLINDILEMSKIEAGRT 672

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSN 714
             +     L + +    ++++L A  K + +     +++P+ I  D   ++Q+ +N+L N
Sbjct: 673 TFNEGSFDLYQLLDSLENMLRLRAEAKGLQLIFDRVSDVPQFIQTDEGKLRQVLINLLGN 732

Query: 715 AIHFTPSGGQIIIST--------THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
           AI FT  GG + +          + +   ++I  + DTG+G+ + E++K  + FGQ  + 
Sbjct: 733 AIKFTEQGG-VTLRVKTGGMMPSSLSKKIKIIFEIEDTGLGIASEEIDKLFEAFGQTESG 791

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           +    +GTGLGLP+++  V+   GK  + S   +G++   
Sbjct: 792 RN-SHQGTGLGLPISQKFVELMGGKIGVNSILGRGSIFTF 830



 Score =  106 bits (265), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 37/304 (12%), Positives = 94/304 (30%), Gaps = 27/304 (8%)

Query: 315 FDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
             E E      +       + ++   N  + +P +  +  Y+  +++E        L  P
Sbjct: 38  LTESEERWQLVLRGTNDGIWDWNLKTNELFLSPRWKEMLGYQD-EELENHFKTWRTLLHP 96

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
           K  +        L+               ++    +   +        +   + +   G 
Sbjct: 97  KDVERVME---TLHEHFERKTDYYVVEFRLRCKDGSYKWILSRGQALWDHSGKPVRMAGS 153

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
             +  D +            L S+++   D I   + +GI    N+A ++  G   + I+
Sbjct: 154 HTDISDRK-------ARQSLLRSLIDCIPDLIFYKDAQGIYRICNKAFAEFVGCKDKQII 206

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS- 552
            K       +     M  Y  ++++    +  E+         +LL              
Sbjct: 207 GKTDFDLFPETLALKMRDYDHQLMTQKNSRRHEEWVDYCDGSRRLLDTLKTPLLGADGEL 266

Query: 553 -CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH-----EIRTPLTAIIGF 606
                   DI++ KQ++  L        ++ + +   L+ ++      E+ T +  I+  
Sbjct: 267 LGVIGISRDITDRKQKEKAL--------EQQAQRDHLLSNIARQLIDQELDTAINYILQA 318

Query: 607 SEVI 610
           +  +
Sbjct: 319 TGDL 322



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 44/135 (32%), Gaps = 7/135 (5%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI--LRKPFTVFL 501
           + K+     +   +L  T+DGI   N +   L  +    ++ GY  E++    K +   L
Sbjct: 35  QEKLTESEERWQLVLRGTNDGIWDWNLKTNELFLSPRWKEMLGYQDEELENHFKTWRTLL 94

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLT 557
                  +   L E                  K+     +    + L   S      + +
Sbjct: 95  HPKDVERVMETLHEHFE-RKTDYYVVEFRLRCKDGSYKWILSRGQALWDHSGKPVRMAGS 153

Query: 558 MHDISEWKQEKNKLS 572
             DIS+ K  ++ L 
Sbjct: 154 HTDISDRKARQSLLR 168



 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/139 (14%), Positives = 43/139 (30%), Gaps = 5/139 (3%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ-NTW 143
             +  DA G  +  ++   + +G    ++IG    D+               L  Q N+ 
Sbjct: 177 LIFYKDAQGIYRICNKAFAEFVGCKDKQIIGKTDFDLFPETLALKMRDYDHQLMTQKNSR 236

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +  +   +G+     +D    P+   + E  G    GI              ++  ++
Sbjct: 237 RHEEWVDYCDGS--RRLLDTLKTPLLGADGELLGV--IGISRDITDRKQKEKALEQQAQR 292

Query: 204 FSHLHEIKKGHSSVEKEKY 222
              L  I +     E +  
Sbjct: 293 DHLLSNIARQLIDQELDTA 311



 Score = 46.2 bits (108), Expect = 0.024,   Method: Composition-based stats.
 Identities = 29/273 (10%), Positives = 73/273 (26%), Gaps = 18/273 (6%)

Query: 59  QESVSNTNYLDSENTFVFDPI-PRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMR 117
            E+         E+   F  I         +ID   +++  +    K  G    +++G  
Sbjct: 452 AEARQEAKEALQESEARFAGILDNANEAIISIDESHHIRLFNHAAEKIFGYGGDEVMGKP 511

Query: 118 LCDVSDILHIDPNNHIGDLLKRQNTWYGK------TTLWPIEGTNLYVPIDLAALPIYSR 171
              +    + + + H  +L ++ +    +            +       + ++ L    +
Sbjct: 512 FDLLLPSRYTESHRHYLELFEQGDETAREMGGREPVFGRRKDEREFLAEVSISKLNQRGK 571

Query: 172 NREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231
                      IV             K+  +   + +  K    +    +       +  
Sbjct: 572 T------IFTAIVRDITERKQAEEALKKAKEAADNANRAKSEFLASMSHELRT-PLNAIL 624

Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291
              ++  + S LTE      D++      LL      + +  +   I   + T  +    
Sbjct: 625 GFTQVLGRNSYLTEEDKTNLDIISRSGEHLLD----LINDILEMSKIEAGRTTFNEGSFD 680

Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
           L          L  R          +  +  P+
Sbjct: 681 LYQLLDSLENMLRLRAEAKGLQLIFDRVSDVPQ 713



 Score = 43.5 bits (101), Expect = 0.16,   Method: Composition-based stats.
 Identities = 23/270 (8%), Positives = 70/270 (25%), Gaps = 19/270 (7%)

Query: 96  KEISEELPKTIGNYAFKMIGM--RLCDVSDILHIDPNNHI--GDLLKRQNTWYGKTTLWP 151
             +S    + +G    ++         +     ++           ++ + +  +  L  
Sbjct: 66  LFLSPRWKEMLGYQDEELENHFKTWRTLLHPKDVERVMETLHEHFERKTDYYVVEFRLRC 125

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
            +G+  Y  I      ++  + +    R  G           ++L + L      L   K
Sbjct: 126 KDGS--YKWILSRGQALWDHSGKPV--RMAGSHTDISDRKARQSLLRSLIDCIPDLIFYK 181

Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT--SEESSL 269
                  +  Y I ++           ++   T++    + +    +       ++++S 
Sbjct: 182 DA-----QGIYRICNKAFAEFVGCKDKQIIGKTDFDLFPETLALKMRDYDHQLMTQKNSR 236

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD---EGENLTPETV 326
             +E     + ++         L     E    +      +     +   E +      +
Sbjct: 237 RHEEWVDYCDGSRRLLDTLKTPLLGADGELLGVIGISRDITDRKQKEKALEQQAQRDHLL 296

Query: 327 DKCPIPFFVYSHGN-LFYANPSFLLLTKYK 355
                          + Y   +   LT   
Sbjct: 297 SNIARQLIDQELDTAINYILQATGDLTGSD 326


>gi|42524006|ref|NP_969386.1| two-component hybrid histidine kinase [Bdellovibrio bacteriovorus
           HD100]
 gi|39576214|emb|CAE80379.1| two-component hybrid histidine kinase [Bdellovibrio bacteriovorus
           HD100]
          Length = 603

 Score =  372 bits (955), Expect = e-100,   Method: Composition-based stats.
 Identities = 95/472 (20%), Positives = 203/472 (43%), Gaps = 17/472 (3%)

Query: 343 YANPSFLLLTKYKSVD-DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401
           + + +   + +      D++   G   +    +   +  ++         T       + 
Sbjct: 142 FWSRALYDIFEVDPDTYDLDRLRGFEMI---AEKDRSLMMETHRRLMEQGTDYDVEVTVC 198

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
           +     +  +    +      Q    +   G+  +    R  ++++  +   L   L+++
Sbjct: 199 S----GKGRVFPARVMGTALRQEGRIVQIYGLMYDVAQRRHVEKELRYQQFLLRMFLQSS 254

Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
              + + + +G  L  +     L G    +++ K              +    +++    
Sbjct: 255 PAIVYVKDLQGRYLLVSPTFENLVGKRSVELVGKTDAQIFGVEDARRFSDSDNQLIQEQQ 314

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAE 579
            ++ E+        +K         +         +    DI+E  + + +L  AK+ AE
Sbjct: 315 PRSYEEKLTFHDGSQKYYLSEKFPLRDEDGHLIAIAGVSTDITELHRYQQELERAKEAAE 374

Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639
             +  KS+FLA +SHEIRTP+ +I+G SE++ +    P       ++   + R+ + +L+
Sbjct: 375 AGTRAKSEFLANMSHEIRTPMNSIMGMSELLLDTELSP----DQRQFVTILTRASSSLLN 430

Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-IL 698
           ++ND+LD+SKIESG M +   P S+ E+V  A+ L+ + A EK++ ++      +P  IL
Sbjct: 431 LINDILDLSKIESGLMVIEKVPFSVRESVRRALELLMIRAVEKKLDLKLEIDPQVPEKIL 490

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
            D    +Q+ +N++ N + FT  G ++ +        ++ + V+DTG+GM   +++    
Sbjct: 491 GDATRFQQVLINLIGNGLKFTTHG-EVRVQLKVN-GHQLWVGVKDTGIGMAPEQMQGLFT 548

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            F Q  +S   R  GTGLGL ++K +V+   G   + S   +G++     PL
Sbjct: 549 RFSQGDSSITRRFGGTGLGLSISKQLVEKMGGTIGVTSEIGQGSVFYFTLPL 600



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/367 (8%), Positives = 100/367 (27%), Gaps = 27/367 (7%)

Query: 94  YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP-I 152
              +++    + +G    +++ +   ++     +       + +++ +        +   
Sbjct: 24  RPAKLNHVWSEVLGWSHEELMQIPFNELIHPEDVKNIVSRYEKIRKGDVLRNFLLRYRCK 83

Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP-RALGKRLDKKFSHL--HE 209
           +G   ++  +    P+ +            +V            LG+   +        +
Sbjct: 84  DGHYKFLSWNYQFDPVTNEA--------LCVVKDTTPQKIFTEILGQANAEAPIGTWSMD 135

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
           +  G     +  YDIF      P     +++       A KD  L  E +  L  + +  
Sbjct: 136 LTTGKHFWSRALYDIFEV---DPDTYDLDRLRGFEM-IAEKDRSLMMETHRRLMEQGTDY 191

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKES---FEYLSHRNHPSLSAYFDEGENLTPETV 326
             +    +     +  +     L+   +                +       + L    +
Sbjct: 192 DVEVTVCSGKGRVFPARVMGTALRQEGRIVQIYGLMYDVAQRRHVEKELRYQQFLLRMFL 251

Query: 327 DKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
              P   +V    G     +P+F  L   +SV+ +        +         +     +
Sbjct: 252 QSSPAIVYVKDLQGRYLLVSPTFENLVGKRSVELVGKTDA--QIFGVEDARRFSDSDNQL 309

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
           +              H    +      ++   F   ++    +   G+  +  +    ++
Sbjct: 310 IQEQQPRSYEEKLTFH----DGSQKYYLSEK-FPLRDEDGHLIAIAGVSTDITELHRYQQ 364

Query: 446 KMEIEVM 452
           ++E    
Sbjct: 365 ELERAKE 371



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/128 (14%), Positives = 45/128 (35%), Gaps = 2/128 (1%)

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
             +  ++ E ++D I +   +      N   S++ G+  E++++ PF   +       + 
Sbjct: 2   ESRYEALFELSNDMIGVFGEDWRPAKLNHVWSEVLGWSHEELMQIPFNELIHPEDVKNIV 61

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570
               +I   D+ +    +     K+     L    +  P ++     + D +  K     
Sbjct: 62  SRYEKIRKGDVLR--NFLLRYRCKDGHYKFLSWNYQFDPVTNEALCVVKDTTPQKIFTEI 119

Query: 571 LSHAKKIA 578
           L  A   A
Sbjct: 120 LGQANAEA 127



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/237 (10%), Positives = 66/237 (27%), Gaps = 13/237 (5%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTT 148
           D  G    +S      +G  + +++G     +  +      ++    L++ Q     +  
Sbjct: 262 DLQGRYLLVSPTFENLVGKRSVELVGKTDAQIFGVEDARRFSDSDNQLIQEQQPRSYEEK 321

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           L   +G+  Y   +    P+   +       G  +       +  +   +R  +      
Sbjct: 322 LTFHDGSQKYYLSE--KFPLRDEDGHLIAIAG--VSTDITELHRYQQELERAKEAAEAGT 377

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE-KYPLLTSEES 267
             K    +    +          P   +      L +     D            +S  +
Sbjct: 378 RAKSEFLANMSHEIR-------TPMNSIMGMSELLLDTELSPDQRQFVTILTRASSSLLN 430

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
            + +  D   I       ++   +++ + + + E L  R          E +   PE
Sbjct: 431 LINDILDLSKIESGLMVIEKVPFSVRESVRRALELLMIRAVEKKLDLKLEIDPQVPE 487


>gi|327539788|gb|EGF26391.1| signal transduction histidine kinase with CheB and CheR activity
            [Rhodopirellula baltica WH47]
          Length = 1739

 Score =  372 bits (955), Expect = e-100,   Method: Composition-based stats.
 Identities = 130/762 (17%), Positives = 280/762 (36%), Gaps = 46/762 (6%)

Query: 83   VRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQN 141
             +  W  +A G ++  S    +  G    + +G+   DV      +    +  D + +  
Sbjct: 856  AQIVWIANADGVVESDSPSWREYTGQTLEQWVGLGWLDVIHPDDRELTQKVWTDAVAKDR 915

Query: 142  TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
                +  L    G   Y    +   P    +   +  R  G+          R      +
Sbjct: 916  PLVLEYRLRNRHGE--YRWFQVRTAPQRRPDGTVN--RWVGMNIDIHDQKQSRLELADRE 971

Query: 202  KKFSHLHEIKKGHSSVEKEKYDIFS--QQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
                 +   + G   V      +     +S       +++V     + A   +       
Sbjct: 972  AHLRRVINNQLGLVGVIDRNGLLLEVDDRSLEYARVNRHEVIGKPFHEAPWWNYDPDVAQ 1031

Query: 260  PLLTSEESSLPEQEDFHTINLNQYTKKQYF-----GTLQNNSKES----FEYLSHRNHPS 310
             +  + E +   +   + ++L  +             + ++           +  R+   
Sbjct: 1032 QMRDAMERAFKGEPVRYDVSLFAHGDDGVLIDFMIAPVFDDDGNIEYLIPSGVDIRDRKK 1091

Query: 311  LSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
                  E         +        +   G +   N +   +  Y  VD++  +  ++ L
Sbjct: 1092 AELKQQEVAVRLEAIFNTAVDGIITIDRRGTINSVNVAAAKIFGYG-VDELTGSN-INVL 1149

Query: 370  LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
            +  P+ S+++              I    R  T +    ++ ++     E +        
Sbjct: 1150 IPEPEHSEHDGYLKAYEETGQSHII-GHQRQVTGRRKDGSTFSLDLSVSETSLSGEH--R 1206

Query: 430  QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
              GI  +  D   +++  +    ++   L A          +       + + +LFG   
Sbjct: 1207 YVGIVRDVSDRVRSEQAKKNASRRMQMALRAGGMAAWEWTPKK--SYWTKEMYELFGVTD 1264

Query: 490  EDILRKP--FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL----RI 543
            +     P         +    +  +  E +  +     E        + ++  +     +
Sbjct: 1265 DR-KGSPELCFSLTHPDDVESLKRHWQEAIEGN--HDYEYEFRIVRPDGEMRWITGMGEV 1321

Query: 544  IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
            +  K    +       D ++   +   L  +++ A + S+ KS FLA +SHEIRTP+TAI
Sbjct: 1322 VRGKSGNVTRMYGVNWDSTQEHVQAETLRESERRANEASASKSAFLANMSHEIRTPMTAI 1381

Query: 604  IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
            +G++E++++     + +   + +   I R+G+ +LDI+ND+LD+SKIE+GK+++  E   
Sbjct: 1382 LGYAELLQD----IIQDTEGLHHLQTIRRNGDYLLDIINDILDLSKIEAGKLDVESERFD 1437

Query: 664  LDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSG 722
                + +  S++++ A E  + +   +   IP  I +D + +KQ+ +N++ NAI FTP G
Sbjct: 1438 PAHLIEDVRSIMEVRAKEAGLELTVEYGQQIPASIQSDAKRLKQVLINLVGNAIKFTPEG 1497

Query: 723  GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
               ++    +    + + V DTG+G+T  + E+   PF Q  +S      GTGLGL +++
Sbjct: 1498 NVRLVVRMDSDPIRLCIDVIDTGIGITLEQQEQLFLPFSQGDSSVNRTFGGTGLGLTISR 1557

Query: 783  AMVDANMGKFYIFSTPAKGTLIEII-FP-------LYDTSHP 816
             + +   G  +  S    G+   +  FP       L D S P
Sbjct: 1558 RLAEMLGGTIHFQSEVGVGSTFTLSVFPGDLTGVALVDHSQP 1599



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 46/430 (10%), Positives = 119/430 (27%), Gaps = 34/430 (7%)

Query: 177 GFRG-FGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKE------KYDIFSQQS 229
           G RG F     NR       L    +     +    +    +  E       ++      
Sbjct: 579 GLRGAFAEAKANRRRVVRDDLLIMSESGQQRVKLTIQPMMQLGHETELFMVAFEDLGPSI 638

Query: 230 PPPHLRMKNKVSSLT--EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287
            P      + + S        H    ++  +  L T+ +      ++    N    +   
Sbjct: 639 APSDSSTDDSIGSDPSIAADPHAQQRIEQLERELATTRDDLDRSIQEMEATNEELTSSYN 698

Query: 288 YFGTLQNNSKESFEYLSHRNHP--SLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYA 344
               +    + + E L        S S             +    I   F+    ++   
Sbjct: 699 ELLVMNQGLQTANEKLEISKEEIRSSSEAVARANADLQNLLRSTRIATIFLDDDLSVRSF 758

Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
            P+   +    + D       +     AP + D   +        +              
Sbjct: 759 TPAATEIYGLIATDVGRPLTQI-----APNVQDMPPLPNWEQLIQEDGVEH--------T 805

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
                  A         +   ++        +         ++        S++ A++  
Sbjct: 806 IVANTGKAFIRRVLPYRSYSGDHDGIVLTFTDVT-------QLRESEELFQSLVRASAQI 858

Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
           + I N +G++ S + +  +  G  +E  +   +   +  +   +     T+ ++ D    
Sbjct: 859 VWIANADGVVESDSPSWREYTGQTLEQWVGLGWLDVIHPDDRELTQKVWTDAVAKDRPLV 918

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKES 582
           LE        E +   +R   ++ P    + +     DI + KQ + +L+  +    +  
Sbjct: 919 LEYRLRNRHGEYRWFQVRTAPQRRPDGTVNRWVGMNIDIHDQKQSRLELADREAHLRRVI 978

Query: 583 SHKSDFLARV 592
           +++   +  +
Sbjct: 979 NNQLGLVGVI 988


>gi|149176849|ref|ZP_01855459.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797]
 gi|148844286|gb|EDL58639.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797]
          Length = 818

 Score =  372 bits (955), Expect = e-100,   Method: Composition-based stats.
 Identities = 110/520 (21%), Positives = 222/520 (42%), Gaps = 30/520 (5%)

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGG 365
               +       ++     ++      +     GN      S+   T     DD +  G 
Sbjct: 138 QRKEIERDLRWMQSRYEAFLNSTSSIIWTTDPRGNFIVPQISWQRFTGQT-WDDHQGDGW 196

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
           L  LL      ++ A    +  +      +     H      E+   +        +Q  
Sbjct: 197 LRALL-----PEDRAELAALWSKPAGKQSSYRVHGHIWHAESESYRPVITEAVPVFDQEG 251

Query: 426 ENMPQNGIEPEDVDTR-------INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
           + +   G   +  + R         + +   +  +L  I +    G+ +++RE   L  N
Sbjct: 252 QILEWVGTVSDIHEQRMAEESLSAAEAESSRQKRELELIYDTAPVGMGLVDREYRYLRIN 311

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK---E 535
             ++++ G   E  L +     +       +     ++          +   G T    +
Sbjct: 312 DTLARINGISREAHLGRVCFELVPGIADR-IKPLYDQVFQTGKA-VKNQEVRGKTPASDK 369

Query: 536 EKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
           E+   +               S  + DI+  K+ +  L  +++ A + +  KS+FLA +S
Sbjct: 370 ERCWLVNYHPMTHRNGEVWGVSSIVQDITARKEMEEALRDSEQQASQANLAKSEFLANMS 429

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HEIRTP+ A++G+++V+     G L +P        + R+G  +L+++ND+LD+S+IE+G
Sbjct: 430 HEIRTPMAAVLGYADVLL----GHLKDPDNRNCVMIMKRNGEHLLELINDILDLSRIEAG 485

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNIL 712
           K+ +     SL E V++  +L+Q+ A+EK +++   F   +P  I+ D   ++QI +N++
Sbjct: 486 KLEVDLNEASLRELVADVQTLMQVRADEKNLMLNVKFTGQVPEKIVTDATRLRQILINLI 545

Query: 713 SNAIHFTPSGGQIIISTTHTSNEE---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
            NAI FT  G ++ +      + +   +   V+DTG+GM+  ++++  KPF Q  +S   
Sbjct: 546 GNAIKFTDQG-EVRLVIRLLPDSDKPIIEFAVQDTGIGMSADQIQRLFKPFSQGDSSVTR 604

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
              G+GLGL ++K +V    G+  + S   +G++  I  P
Sbjct: 605 AYGGSGLGLAISKRLVQMLKGQLKVKSEVGQGSIFRIRLP 644



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/140 (10%), Positives = 37/140 (26%), Gaps = 2/140 (1%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D       I++ L +  G      +G    ++   +          + +       +  
Sbjct: 301 VDREYRYLRINDTLARINGISREAHLGRVCFELVPGIADRIKPLYDQVFQTGKAVKNQEV 360

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                 ++      +   P+  RN E  G     IV       +     +  +++ S  +
Sbjct: 361 RGKTPASDKERCWLVNYHPMTHRNGEVWGVS--SIVQDITARKEMEEALRDSEQQASQAN 418

Query: 209 EIKKGHSSVEKEKYDIFSQQ 228
             K    +    +       
Sbjct: 419 LAKSEFLANMSHEIRTPMAA 438



 Score = 48.9 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/259 (8%), Positives = 59/259 (22%), Gaps = 14/259 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            W  D  G          +  G       G                 +      + + Y 
Sbjct: 164 IWTTDPRGNFIVPQISWQRFTGQTWDDHQGDGWLRALLPEDRAELAALWSKPAGKQSSYR 223

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN-------DPRALGK 198
                    +  Y P+   A+P++ +  +       G V                 A   
Sbjct: 224 VHGHIWHAESESYRPVITEAVPVFDQEGQI--LEWVGTVSDIHEQRMAEESLSAAEAESS 281

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH-----KDDV 253
           R  ++   +++       +   +Y           +   ++ + L            D +
Sbjct: 282 RQKRELELIYDTAPVGMGLVDREYRYLRINDTLARINGISREAHLGRVCFELVPGIADRI 341

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
                    T +     E       +  +      +  + + + E +   S     +   
Sbjct: 342 KPLYDQVFQTGKAVKNQEVRGKTPASDKERCWLVNYHPMTHRNGEVWGVSSIVQDITARK 401

Query: 314 YFDEGENLTPETVDKCPIP 332
             +E    + +   +  + 
Sbjct: 402 EMEEALRDSEQQASQANLA 420


>gi|256829193|ref|YP_003157921.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256578369|gb|ACU89505.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 778

 Score =  372 bits (955), Expect = e-100,   Method: Composition-based stats.
 Identities = 123/610 (20%), Positives = 237/610 (38%), Gaps = 36/610 (5%)

Query: 213 GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ 272
            +  V      IF   SP   L     + +       + +  K     +L +    +  +
Sbjct: 38  RYLYVNPAWVRIFGYDSPEDVLVSITDIGTQVYVDPAQREEFKR----VLEAHGEVVNFE 93

Query: 273 EDFHTINLNQYTKKQYFGTLQNNSKESFEYLS----HRNHPSLSAYFDEGENLTPETVDK 328
             F   + +     +    +++       Y              A   + + +     D 
Sbjct: 94  SKFKRRDGSIVWVSRNARAVRDAQGRISHYQGFTTDITERKQSEAALQKQKAMLEHLFDS 153

Query: 329 CPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
            P    +  + G +   N SF  L  Y+  D           L +  +  + A     L 
Sbjct: 154 SPEAIAIVDNQGFVLQINKSFTYLFGYEWEDAHGKQI---NDLVSQGMYRDEAGHYSDLV 210

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
             + T             +      +        +     +    I  +  D ++ ++ +
Sbjct: 211 FKNGTI--VETETVRCTKDGTPLDVVLIGYPILID--GRIIGAYAIYRDITDRKLAEKSL 266

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
           +    +  ++  A+  GI I ++ GIIL  N+ +S + GY V +++     + + + +  
Sbjct: 267 QESEERFKALHNASFGGITIHDK-GIILDCNQGLSGITGYSVNELIGMDGLLLIAEKSRK 325

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT--MHDISEWK 565
           ++   +                +G  K  +   LR+  + +P+      +    D +E K
Sbjct: 326 MVMKNILAGYEKP------YEAVGLRKNGQEYPLRLEARNIPYKGRMVRSVEFRDDTERK 379

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
             + +L  A+  A+  +  KS+FLA +SHEIRTPL  ++G            L +    E
Sbjct: 380 LVEAELIKARDAAQAANQAKSEFLANMSHEIRTPLNGVMGL----MQLLQTTLLDDEQRE 435

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
             +   RS + +  ++ DLLDISKIE+GKM++  E  SL E       L  + A++K + 
Sbjct: 436 IVSMAIRSSDRLARLLTDLLDISKIEAGKMDVVEEDFSLRELCDSVTELFAVNADKKNVS 495

Query: 686 IRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIS---TTHTSNEEVI--L 739
           +      ++P IL   +  ++QI  N++ N++ FT  G ++ +         N E+    
Sbjct: 496 LEYVIDPDLPPILIGGVARLRQILFNLVGNSLKFTDQG-RVRLEMAPIAPAKNGELRLLF 554

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V DTG+G+   +L    KPF Q+  S   + +G GLGL + + +V+   G  Y+ S   
Sbjct: 555 SVYDTGIGIPEDKLRDLFKPFAQVEGSYTRKYQGAGLGLAIVRRLVELMRGHIYMESVLG 614

Query: 800 KGTLIEIIFP 809
           KGT + ++ P
Sbjct: 615 KGTAVHVVLP 624



 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 35/399 (8%), Positives = 93/399 (23%), Gaps = 49/399 (12%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKR-QNT 142
            ++    G    ++    +  G  + + + + + D+   +++DP        +L+     
Sbjct: 30  VFSSTPEGRYLYVNPAWVRIFGYDSPEDVLVSITDIGTQVYVDPAQREEFKRVLEAHGEV 89

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
              ++     +G+   V +   A  +       S ++GF             A  ++   
Sbjct: 90  VNFESKFKRRDGSI--VWVSRNARAVRDAQGRISHYQGF--TTDITERKQSEAALQKQKA 145

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
              HL +      ++   +  +               +       AH   +       + 
Sbjct: 146 MLEHLFDSSPEAIAIVDNQGFVLQINKSFT------YLFGYEWEDAHGKQINDLVSQGMY 199

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTL--------------QNNSKESFEYLSHRNH 308
             E     +    +   +   T +                             Y    + 
Sbjct: 200 RDEAGHYSDLVFKNGTIVETETVRCTKDGTPLDVVLIGYPILIDGRIIGAYAIYRDITDR 259

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
                   E E       +       ++  G +   N     +T Y   + I    G+  
Sbjct: 260 KLAEKSLQESEERFKALHNASFGGITIHDKGIILDCNQGLSGITGYSVNELI----GMDG 315

Query: 369 LLDAPKLSDN----------NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
           LL   + S                  +  R +            I +      ++ F   
Sbjct: 316 LLLIAEKSRKMVMKNILAGYEKPYEAVGLRKNGQEYPLRLEARNIPYKGRMVRSVEFRDD 375

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
            +                       +   + +   L ++
Sbjct: 376 TERK--------LVEAELIKARDAAQAANQAKSEFLANM 406


>gi|229099048|ref|ZP_04229982.1| hypothetical protein bcere0020_42710 [Bacillus cereus Rock3-29]
 gi|229118079|ref|ZP_04247438.1| hypothetical protein bcere0017_43480 [Bacillus cereus Rock1-3]
 gi|228665302|gb|EEL20785.1| hypothetical protein bcere0017_43480 [Bacillus cereus Rock1-3]
 gi|228684276|gb|EEL38220.1| hypothetical protein bcere0020_42710 [Bacillus cereus Rock3-29]
          Length = 571

 Score =  372 bits (955), Expect = e-100,   Method: Composition-based stats.
 Identities = 93/388 (23%), Positives = 181/388 (46%), Gaps = 26/388 (6%)

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           +           +   + +  +E E    +L +++E    G+ +I+  G I   NR+  +
Sbjct: 200 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 259

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542
            F    E+ L + +           +   + EI   +++   + +  LG  ++   +   
Sbjct: 260 TFHVTDEEYLDRLYYESFHHT---EIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 316

Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
            II          L  HDI+E K+ +                + DFLA VSHE++TP+T+
Sbjct: 317 PIIGTNHEWKGIVLVFHDITELKRLE--------------QMRKDFLANVSHELKTPITS 362

Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           I GFSE + +   G + N ++ E + + I +    +  ++ DLLD+SKIE     L+ E 
Sbjct: 363 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMET 419

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           V +   + +   ++   A EK I ++ +    +  ++ D   +KQI +N+++NAI +TP+
Sbjct: 420 VDMKGILEDIHMVLDNKAGEKEISLQVNVLKRV-SVIGDPGRLKQIFINLINNAIVYTPA 478

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           GG + +           ++V DTG+G++  E+ +  + F ++  ++     GTGLGL + 
Sbjct: 479 GGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIV 537

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           K +V+A+ G   + S   +GT   ++ P
Sbjct: 538 KHLVEAHHGTITVDSEVGEGTTFTVVLP 565


>gi|117925512|ref|YP_866129.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117609268|gb|ABK44723.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1120

 Score =  372 bits (955), Expect = e-100,   Method: Composition-based stats.
 Identities = 130/746 (17%), Positives = 261/746 (34%), Gaps = 52/746 (6%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEG 154
               +++L   +      ++   +    D  H D      + L R  T   +  L     
Sbjct: 245 FLHANKQLCVLLECQPKALLNTPIDQWLDPRHRDYYIDQYERLVRHLTENFELELPLCTA 304

Query: 155 TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214
               V ++L+   ++  +   +      +       N   A  K  +K+F  + E     
Sbjct: 305 LGRRVSVNLSTRALWDTSGRITHCIHTAV--DLSEHNHIIAQVKESEKRFRAIFEHAGLA 362

Query: 215 SSVEKEKYDIFSQQSPPP---HLRMKNKVSSLTEYYAHKDD--VLKTEKYPLLTSEESSL 269
            +       I    S             V    +   H  D     +  + L   + S  
Sbjct: 363 VAQGDIHGTIIKVNSAYANLLGYSPDELVGRSLQSLTHPSDFPENLSLLHDLAKKKRSVY 422

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL----SHRNHPSLSAYFDEGENLTPET 325
             ++     + +    +     L N   E    +       +     A   E E    + 
Sbjct: 423 TLEKRILHKDGSWIWVESTVTALTNAMDEPEFLINMTRDITDRRRAEAALVESEQRYRQL 482

Query: 326 VDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDD----IEIAGGLSTLLDAPKLSDNN 379
             +      +    +G +  AN +      Y         I     L+      ++    
Sbjct: 483 FQRNKAVELLIDPVNGQIVDANMAAADYYGYSCDTLRQMNIAQINILTRDEIEQEMLRAE 542

Query: 380 AI----KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
                        S             ++      L        +  +    +  N    
Sbjct: 543 QENRNHFQFRHRLSSGEVRDVEIHSGPVEIQGRALLYSIVHDITERRRIEAALSHN---- 598

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILR 494
                   + ++E    +L +IL++    + + + + G IL  NR +  + G    ++  
Sbjct: 599 --------RHQLEASHGRLITILDSLQSIVYVADPQTGEILYHNRYLFDIAG----NLKG 646

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554
           +   +              +     +  Q+ E  +  + +           + + +    
Sbjct: 647 EREELLYPNKKRLSQGTPASRSRGRNHAQSWEYCSPINHR-----WYSAHSQPITWVDGR 701

Query: 555 SL---TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
           ++      DI+  KQ +  L  AK++AE  +  KSDFLA +SH+IRTP+ A++G  E++ 
Sbjct: 702 TVRLEVATDINSLKQSEQALLQAKELAESANRAKSDFLATMSHDIRTPMNAVLGMVELLG 761

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
                   +P    Y   I R+G+ +L ++ND+LD+SKIE+G++ L  +  +L E V   
Sbjct: 762 ESSL----DPEQSHYLKIIRRAGSTLLSLINDILDLSKIEAGQLKLELDDFTLAETVEHV 817

Query: 672 ISLVQLYANEKRILIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
           + +++  A+EK + ++T        R+  D + ++QI LN+L NA+ FT  G  + ++  
Sbjct: 818 MDILRHKASEKGLQLQTHLHIPPQQRVRGDAQRLRQILLNLLGNAVKFTQQGS-VSLTLQ 876

Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
              + +   +V DTG G+  +  +   +PF Q  +       G+GLGL +   +V A  G
Sbjct: 877 QQPDGQYSFQVADTGPGIAPHRQKIIFEPFVQEESGTHRHFGGSGLGLSICHKLVTAMRG 936

Query: 791 KFYIFSTPAKGTLIEIIFPLYDTSHP 816
             ++ S    G++     PL     P
Sbjct: 937 TLWLKSQLGHGSIFYFTLPLATAMEP 962



 Score =  122 bits (306), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 63/525 (12%), Positives = 131/525 (24%), Gaps = 47/525 (8%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            W  D        S    + +G    + I          +H D      + L+      G
Sbjct: 99  MWEWDIASGALYFSCHWERMLGFEPGE-IPHTYQAWITQIHPDDKTATLEALE--QHLQG 155

Query: 146 KTTLWPIEGT-----NLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
            T  + IE         ++ +      +   +++ +  R  G               +  
Sbjct: 156 HTQHFEIEHRQHTKKGTWLWLLTRGKVVQWGDQQ-TPLRMMGTQMNVTDRIRGEQALRFA 214

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQS----------------PPPHLRMKNKVSSLT 244
             +      +   + +       I +                   P   L          
Sbjct: 215 HTQLKQQERLFHDYFAHGVVGMAITTPDRLFLHANKQLCVLLECQPKALLNTPIDQWLDP 274

Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
            +  +  D  +     L  + E  LP      T    + +       L + S      + 
Sbjct: 275 RHRDYYIDQYERLVRHLTENFELELP----LCTALGRRVSVNLSTRALWDTSGRITHCIH 330

Query: 305 HRNHPSLS----AYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDD 359
                S      A   E E       +   +       HG +   N ++  L  Y   + 
Sbjct: 331 TAVDLSEHNHIIAQVKESEKRFRAIFEHAGLAVAQGDIHGTIIKVNSAYANLLGYSPDEL 390

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
           +  +      L  P     N      L +  R+      R   I     + + +      
Sbjct: 391 VGRSL---QSLTHPSDFPENLSLLHDLAKKKRSVYTLEKR---ILHKDGSWIWVESTVTA 444

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR-EGIILSTN 478
             N   E      +  +  D R  +  +     +   + +       +I+   G I+  N
Sbjct: 445 LTNAMDEPEFLINMTRDITDRRRAEAALVESEQRYRQLFQRNKAVELLIDPVNGQIVDAN 504

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
            A +  +GY  + + +             +    L                       ++
Sbjct: 505 MAAADYYGYSCDTLRQMNIAQINILTRDEIEQEMLRAEQENRN----HFQFRHRLSSGEV 560

Query: 539 LSLRIIIKKLPFSSCYSL--TMHDISEWKQEKNKLSHAKKIAEKE 581
             + I    +       L   +HDI+E ++ +  LSH +   E  
Sbjct: 561 RDVEIHSGPVEIQGRALLYSIVHDITERRRIEAALSHNRHQLEAS 605



 Score = 86.2 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 46/434 (10%), Positives = 119/434 (27%), Gaps = 44/434 (10%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK--RQNTWYGKT 147
           D HG + +++      +G    +++G  L  ++       N  +   L   +++ +  + 
Sbjct: 367 DIHGTIIKVNSAYANLLGYSPDELVGRSLQSLTHPSDFPENLSLLHDLAKKKRSVYTLEK 426

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
            +   +G+ ++V   + AL       EF       +           A     ++++  L
Sbjct: 427 RILHKDGSWIWVESTVTALTNAMDEPEFL----INMTRDITDRRRAEAALVESEQRYRQL 482

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP---LLTS 264
            +  K    +           +            +L +    + ++L  ++     L   
Sbjct: 483 FQRNKAVELLIDPVNGQIVDANMAAADYYGYSCDTLRQMNIAQINILTRDEIEQEMLRAE 542

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGT--LQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
           +E+    Q      +      + + G   +Q  +              + A      +  
Sbjct: 543 QENRNHFQFRHRLSSGEVRDVEIHSGPVEIQGRALLYSIVHDITERRRIEAALSHNRHQL 602

Query: 323 PE-------TVDKCPIPFFVYS--HGNLFYANPSFLLLTK---YKSVDDIEIAGGLSTLL 370
                     +D      +V     G + Y N     +      +  + +       +  
Sbjct: 603 EASHGRLITILDSLQSIVYVADPQTGEILYHNRYLFDIAGNLKGEREELLYPNKKRLSQG 662

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
                S          Y S       SA    I W    ++ +                 
Sbjct: 663 TPASRSRGRNHAQSWEYCSPINHRWYSAHSQPITWVDGRTVRL----------------- 705

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR--AVSKLFGYP 488
             +  +    + +++ +        S   A SD +A ++ +      N    + +L G  
Sbjct: 706 -EVATDINSLKQSEQALLQAKELAESANRAKSDFLATMSHDIR-TPMNAVLGMVELLGES 763

Query: 489 VEDILRKPFTVFLE 502
             D  +  +   + 
Sbjct: 764 SLDPEQSHYLKIIR 777



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/288 (13%), Positives = 84/288 (29%), Gaps = 27/288 (9%)

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
             D  AI   M               H ++     +  +  +               G  
Sbjct: 10  PQDRPAILQAMAQAWQNPGQPVEVEFH-VEIGEIWTKVIRCVMQSTPRPSGSPQRLFGSV 68

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
                 R     +     +L  ILE   +G+   +     L  +    ++ G+   +I  
Sbjct: 69  QNITLLRKIGDALVHSEERLNLILEGAQEGMWEWDIASGALYFSCHWERMLGFEPGEIPH 128

Query: 495 --KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII--IKKLPF 550
             + +   +  +  +     L + L    +   E      TK+   L L     + +   
Sbjct: 129 TYQAWITQIHPDDKTATLEALEQHLQGHTQH-FEIEHRQHTKKGTWLWLLTRGKVVQWGD 187

Query: 551 SS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA----RVSHEIRTP---- 599
                    T  ++++  + +  L  A    +++     D+ A     ++  I TP    
Sbjct: 188 QQTPLRMMGTQMNVTDRIRGEQALRFAHTQLKQQERLFHDYFAHGVVGMA--ITTPDRLF 245

Query: 600 LTA---IIGFSEV----IKNQRFGPLGNPRYIE-YANYIDRSGNLVLD 639
           L A   +    E     + N       +PR+ + Y +  +R    + +
Sbjct: 246 LHANKQLCVLLECQPKALLNTPIDQWLDPRHRDYYIDQYERLVRHLTE 293


>gi|302877998|ref|YP_003846562.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
           ES-2]
 gi|302580787|gb|ADL54798.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
           ES-2]
          Length = 918

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 108/527 (20%), Positives = 204/527 (38%), Gaps = 53/527 (10%)

Query: 313 AYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
               + E      ++     F V    G +   N ++  L+ Y + + +       T+  
Sbjct: 136 EQIRQHELQYRAVIETSKDGFLVVDMQGRILETNDAYACLSGYSAEELV-------TMNI 188

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
               +  +A     +         A        W+      +  +         E     
Sbjct: 189 GDLEAKMSASDVAHVLTGLAEQGHARFETQHKTWSGH----IWPVEINVTYIAAEGGRCF 244

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
               +    + ++ ++     +L   +E + +   I +  G+I   N A + + GY   +
Sbjct: 245 SFLHDISQRKQDEAQLR----KLSQAVEQSPNSNVICDTNGVIEYVNAAFTAITGYSASE 300

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
            + +    F    T   +   L + L     +  +   +   K  +  +   I+  +  +
Sbjct: 301 AIGRKTGFFKSGLTQPEVYAALWQTLQQG--EVWQGEFINRRKNGEDYTDFAIVSPIRQA 358

Query: 552 SC----YSLTMHDISEWKQEKNKLSHAKK------------------IAEKESSHKSDFL 589
                 Y     DI++ K    +L   ++                   AE  +  KS+FL
Sbjct: 359 DGEITHYVAIQKDITQKKLMDEELEIYRRDLEALVVKRTSEMFEAKTQAEAANKAKSEFL 418

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
           A +SHEIRTP+ AIIGF+E+    +     + +  +Y      +   +L I+N++LD+SK
Sbjct: 419 ANMSHEIRTPMNAIIGFNELCLRTQL----SDKQKDYLTKAGSAAQSLLHIINEVLDLSK 474

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP--RILADLRSVKQI 707
           IE+G+  L   P+ +   V     L+ + A +K + I      +I    +  D   ++QI
Sbjct: 475 IEAGQHMLEAIPLKISRVVKNVTDLIGVLAVDKGLTIHVDLDEHIEQYPLRGDPMRLQQI 534

Query: 708 ALNILSNAIHFTPSGGQIIISTTHT----SNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
            LN+ SNAI F+  G  I I            E+   V+D+G+G++  +L    KPF Q 
Sbjct: 535 LLNLCSNAIKFSTQGS-ISIRCQLGAISGQAVELKFAVQDSGIGISPAQLGLLFKPFSQA 593

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL--IEIIF 808
            +S   R  GTGLGL + + +V+   G+ ++ S P  G+     + F
Sbjct: 594 DSSTTRRFGGTGLGLSICRGLVERMGGRIWVESEPGIGSTFCFTVRF 640



 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 49/386 (12%), Positives = 108/386 (27%), Gaps = 25/386 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D  G + E ++      G  A +++ M + D+   +      H+   L  Q     +T 
Sbjct: 159 VDMQGRILETNDAYACLSGYSAEELVTMNIGDLEAKMSASDVAHVLTGLAEQGHARFETQ 218

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                G    V I++  +          G R F  +H         A  ++L +      
Sbjct: 219 HKTWSGHIWPVEINVTYIAA-------EGGRCFSFLHDISQRKQDEAQLRKLSQAVEQSP 271

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
                         +  +           ++       +             L  + +  
Sbjct: 272 N--SNVICDTNGVIEYVNAAFTAITGYSASEAIGRKTGFFKSGLTQPEVYAALWQTLQQG 329

Query: 269 LPEQEDF--HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
              Q +F     N   YT       ++    E   Y++ +   +     DE   +    +
Sbjct: 330 EVWQGEFINRRKNGEDYTDFAIVSPIRQADGEITHYVAIQKDITQKKLMDEELEIYRRDL 389

Query: 327 DKCPI---PFFVYSHGNLFYANPS---FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
           +   +        +      AN +   FL    ++    +    G + L    +LSD   
Sbjct: 390 EALVVKRTSEMFEAKTQAEAANKAKSEFLANMSHEIRTPMNAIIGFNELCLRTQLSDKQK 449

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP----- 435
                   + ++ +     +  +         +  IP + +          G+       
Sbjct: 450 DYLTKAGSAAQSLLHIINEVLDLSKIEAGQHMLEAIPLKISRVVKNVTDLIGVLAVDKGL 509

Query: 436 ---EDVDTRINKRKMEIEVMQLCSIL 458
               D+D  I +  +  + M+L  IL
Sbjct: 510 TIHVDLDEHIEQYPLRGDPMRLQQIL 535


>gi|196231944|ref|ZP_03130800.1| PAS/PAC sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
 gi|196224066|gb|EDY18580.1| PAS/PAC sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
          Length = 739

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 105/576 (18%), Positives = 221/576 (38%), Gaps = 22/576 (3%)

Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303
           +     +    ++ + P       +   + D+  +       + +   L + +K    +L
Sbjct: 37  SASIPLRHLGGESHRNPSPPRFAPAGAAERDYCRVP-RPTADRLHIAKLLDPTKVMVPHL 95

Query: 304 SHRNHPSL-SAYFDEGENLTPETVDKCPI-PFFVYSHGN-LFYANPSFLLLTKYKSVDDI 360
                     A + E E      V+       F       +   N     +  Y++ + +
Sbjct: 96  HMPPRAKPDRANWHETEERFRLLVESVKDYGIFTLDADGCVTSWNEGARRIKGYEAAEIL 155

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
                 S       +      + +++  ++            ++ +     A   I    
Sbjct: 156 G--SHFSRFYPPEDVLAGKPERELVIAIAEGR---VEDEGWRLRKDGTRFWADVVITSLW 210

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNR 479
            +   E      +  +  + R  +  +     Q   +++  ++  I +++  G +++ N 
Sbjct: 211 DSATGELKGFGKVTRDLTERRQAEIALRQSEEQFRLLVDCVAEYAIFMLDPTGHVVTWNS 270

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMN--HYLTEILSLDLRQTLEKITLGSTKEEK 537
              K  GY  ++I+ K F  F  +           L E  S    +          K+  
Sbjct: 271 GAEKAKGYLAKEIIGKHFGCFYTKEDRDTDLPNRLLEEARSHGHVRAQGTRVR---KDGT 327

Query: 538 LLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
                ++I  +  S      +S    DI+E  +   ++  AK  AEK +  K +FLA +S
Sbjct: 328 TFQADVLITAIRDSTGQLQGFSKVTRDITEQLRI-REMETAKLTAEKANEAKDNFLAVLS 386

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HE+RTPLT +I  +  +   R   + +   +E+ + I R+  L   +++DLLD+++I  G
Sbjct: 387 HELRTPLTPVIAGASYLIENR-SAISDEEMLEHLHTIRRNAQLEAQLIDDLLDLTRISRG 445

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713
           KM LH E V +  A+ +  +++Q     K++ +             D   ++Q+  N+++
Sbjct: 446 KMILHPEAVDIHAALRDVGAILQEEIQRKQLALSYDLQATGYWSWVDPTRIRQVFWNLIN 505

Query: 714 NAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
           NAI FTP GG+I + + + S   + + V D+G+G+   + ++    F Q       +  G
Sbjct: 506 NAIKFTPEGGRIKVRSANPSPTCLRVDVSDSGLGIAPEQQQRIFGAFEQGEVDTTRKFGG 565

Query: 774 TGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIF 808
            GLGL + + +V+   G   + S    KG    +  
Sbjct: 566 LGLGLAITRHLVEQQNGSISVTSEGKGKGACFTVTL 601



 Score = 65.4 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/269 (10%), Positives = 71/269 (26%), Gaps = 9/269 (3%)

Query: 58  NQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMR 117
            +      N+ ++E  F            + +DA G +   +E   +  G  A +++G  
Sbjct: 99  PRAKPDRANWHETEERFRLLVESVKDYGIFTLDADGCVTSWNEGARRIKGYEAAEILGSH 158

Query: 118 LCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYS-RNREFS 176
                    +       +L+        +   W +         D+    ++     E  
Sbjct: 159 FSRFYPPEDVLAGKPERELVIAIAEGRVEDEGWRLRKDGTRFWADVVITSLWDSATGELK 218

Query: 177 GFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHS----SVEKEKYDIFSQQSPPP 232
           GF    +              ++ +++F  L +    ++              S      
Sbjct: 219 GFGK--VTRDLTERRQAEIALRQSEEQFRLLVDCVAEYAIFMLDPTGHVVTWNSGAEKAK 276

Query: 233 HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTI--NLNQYTKKQYFG 290
               K  +      +  K+D        LL    S    +     +  +   +       
Sbjct: 277 GYLAKEIIGKHFGCFYTKEDRDTDLPNRLLEEARSHGHVRAQGTRVRKDGTTFQADVLIT 336

Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
            +++++ +   +       +      E E
Sbjct: 337 AIRDSTGQLQGFSKVTRDITEQLRIREME 365


>gi|257094176|ref|YP_003167817.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257046700|gb|ACV35888.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 1119

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 130/775 (16%), Positives = 270/775 (34%), Gaps = 59/775 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL-HIDPNNHIGDLLKRQNTWYGKT 147
           +D  G L E+S+     +G    ++IG  +          D  + +   L         T
Sbjct: 212 LDTTGNLVEVSDSFCAMLGYSREELIGSNMAGRDARFADDDGPSRLRQELDSPQRRVLHT 271

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS-- 205
                +G    +P+D++ +P+    +    +    +    R + +     +RL  +    
Sbjct: 272 RYRHRDGRL--IPVDVSGVPVLIEGQRLLFYSARDVTERKRAEEELALERQRLADQLRFT 329

Query: 206 -HLHEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEKYPLL 262
             L +        + E        +         ++ +   + +      +         
Sbjct: 330 SQLIDTIPNPVFFKDENGRYLGCNTAFETYIGIERDNLIGRSVHDIVPSSLADKYLAADR 389

Query: 263 T--SEESSLPEQEDFHTINLNQYTKKQYFGTLQNN----SKESFEYLSHRNHPSLSAYFD 316
               +  +   Q +    + +         T               L       + +   
Sbjct: 390 ALFEQRGTQTYQAEVRYADGSLREVVFNKATFNRADGGLGGLVGVMLDITERMRMESALK 449

Query: 317 EGENLTPETVDKCPIPFFVYSH------GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
           +    T   +        V               NP+   LT Y S+ D+   G    L 
Sbjct: 450 QQAAFTDGIIAAMVDGIAVCHEIPQPPQVRFTVWNPAMQKLTGY-SLSDVNELGWQRALQ 508

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
              +  ++   +   + R D           TI+        +       +      +  
Sbjct: 509 VDDERQEDARQRAEGMRRGD----HLRGDEWTIRRRDGERRTVQVHTTFVSPPSG-GVHL 563

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490
             +  +    +  ++ +  +       L+     +  ++ EG I   NRA   L GY   
Sbjct: 564 LLVLRDVTARKAAEQLLRQQHNLAQRYLDTVQSLMLALDTEGQITMINRAGRDLLGYTEN 623

Query: 491 DILRKPF--TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
           ++L + +  T   + +           I++ +L  +         ++  L  +      L
Sbjct: 624 ELLGRCWFSTCLPQPSGTERGLPTFRRIIAGELDASFSAEDSVLCRDGSLRLIGWKTGAL 683

Query: 549 PFSSCYSL----TMHDISEWKQEKNKLSHAK------------------KIAEKESSHKS 586
              +   +    +  DI E K+ + +L   +                  + AE+ +  KS
Sbjct: 684 TDDAGRIIGTLSSGADIGERKEVEAELERYRAHLETLVAQRTAELSLAKEAAERANRAKS 743

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
           +FL+ +SHE+RTP+ AIIGF+++++   +    +    +  + I ++   +LD++N++LD
Sbjct: 744 EFLSSMSHELRTPMNAIIGFAQMLE---YDGELSADQHDSVHEILKASRHLLDLINEVLD 800

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706
           +++IESG++ L  E   +   V +   L++  A    I + T        + AD   +KQ
Sbjct: 801 LARIESGRIELSLETTDIAAVVDDCRHLIEPLAAPLAITLSTLVPAGA-TVHADRTRLKQ 859

Query: 707 IALNILSNAIHFTPSGGQIIISTTHT---SNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
             LN+LSNA+ +    G I I        S     + V DTG+G+    L +  +PF ++
Sbjct: 860 ALLNLLSNAVKYNRERGSIQIDVEQQLTASGLRQRICVADTGIGIAPQRLNEVFQPFTRL 919

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
             ++    EG+G+GL + K +V+   G+    S    G+   I  P   + H HD
Sbjct: 920 -LAENSEIEGSGIGLTITKRLVELMGGEIAAESEIGVGSRFWIDLPAGTSVH-HD 972



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 37/332 (11%), Positives = 97/332 (29%), Gaps = 23/332 (6%)

Query: 282 QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI-PFFVYSHGN 340
               + +   L    ++    +   N  +    F        E  D+      + +    
Sbjct: 7   LPWDETFDTGLPEVDEQHRRLVQLINVLASHVAFRTHIPQLEEMFDELADYAVYHFRTEE 66

Query: 341 LFYANPSFLLLTKYKSVDDIEI-AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399
             +        ++             +S L   P            L R   + I  S R
Sbjct: 67  AVWHEHLAGDQSEVDHQAIHASFVQEVSRLRGQPDGQRAAEETLAFLARWLISHILESDR 126

Query: 400 LHT---------IQWNRENSLAMTFIPFEKANQFPENMPQNGI--------EPEDVDTRI 442
                       +      + A   +           +  N            E  + R 
Sbjct: 127 YMACTTLALRAGLSREAARAHASAEMARGARRFADIVLSINATPVTNALHLMAELAELRR 186

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            + ++  E  +  ++L + SDG+ +++  G ++  + +   + GY  E+++         
Sbjct: 187 AQTELRHESEKNRALLRSASDGVHVLDTTGNLVEVSDSFCAMLGYSREELIGSNMAGRDA 246

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII--IKKLPFSSCYSLTMHD 560
           +         L + L    R+ L   T    ++ +L+ + +      +        +  D
Sbjct: 247 RFADDDGPSRLRQELDSPQRRVLH--TRYRHRDGRLIPVDVSGVPVLIEGQRLLFYSARD 304

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
           ++E K+ + +L+  ++    +    S  +  +
Sbjct: 305 VTERKRAEEELALERQRLADQLRFTSQLIDTI 336


>gi|34497076|ref|NP_901291.1| sensor/response regulatory hybrid protein [Chromobacterium violaceum
            ATCC 12472]
 gi|34102933|gb|AAQ59297.1| probable sensor/response regulatory hybrid protein [Chromobacterium
            violaceum ATCC 12472]
          Length = 1748

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 130/775 (16%), Positives = 260/775 (33%), Gaps = 52/775 (6%)

Query: 82   TVRFT---WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK 138
             V F    W+ D    +   +       G     + GMR+ D+        N    + + 
Sbjct: 504  AVPFIIGYWDCDQINRV--ANHAYRTWFGIDPGALPGMRMRDLLGEPLYQANLPHIEAVL 561

Query: 139  RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
                   +  +   +G   +         +    R F     + IV       + R+   
Sbjct: 562  GGEPQVFERQICGQDGVVRHSLTTYLPDLVNDEVRGF-----YAIVQDISEQVESRSRLT 616

Query: 199  RLDKKFSHLHEIKKGHS--SVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256
               K+   L +        +       I         +    +   L   +      +  
Sbjct: 617  SALKERELLLDTINQQLLYTATDTDGRILEANDLFCQVHGYERKELLGWDHRKLSAGVHP 676

Query: 257  E--KYPLLTSEESSLPEQEDF--HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
                  L  +  S    + +    T    Q            +S     Y++ R   +  
Sbjct: 677  AMFWQSLWRTIASGRVWRGEVCNQTREGRQRWFDTVIVPHAGDSGRIERYIALRIDITER 736

Query: 313  AYFDEGENLTPETVDKCPIP------FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
               D         +                 HG +   N     +  Y   + +  A  L
Sbjct: 737  KLADAELARVHGMLSNVLRAASEVAIIAADVHGVVSLFNSGAQRMLGYSENEMVGRA-ML 795

Query: 367  STLLDAPKLSDNNAI---------KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
            +      +L ++            + +     +     A  R  T      + L ++ + 
Sbjct: 796  THFHLPEELREHGEALSQRYERQVEGLRALVQEPEASGAETREWTYVRKDGSQLQVSLMV 855

Query: 418  FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
                +     +    I  +    +  +R++     QL    E    G+   +     L  
Sbjct: 856  TAMRDADELVVGYLAIAADITIPQRQQRELVAARDQLQLAAEVAQLGVWSWSPADNQLRW 915

Query: 478  NRAVSKLFGYPVE----DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
            N  + +++  P E     +  + +   +  +    +   L  +L                
Sbjct: 916  NAQMFEIYRQPPELAERGLEYRHWRERVHPDDVDSVEADLRALLERGEAMDRVFRVRLPD 975

Query: 534  KEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
             E + + +   +++       +    DI+E +  +  L  AK+ AE+ S  KS FLA +S
Sbjct: 976  GEMRYVQVGARLERHGDGVRVTGINRDITETRAYEQNLLEAKRQAEEASMVKSQFLANMS 1035

Query: 594  HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
            HEIRTP+ A++G  +++++ R     + R ++Y   I  +   +L ++ND+LD SKI++G
Sbjct: 1036 HEIRTPMNAVLGLLQLMQHTRL----DERQLDYVGKIQAAAKSLLGLLNDILDFSKIDAG 1091

Query: 654  KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNIL 712
            K+ L   P  L+  + E   ++    N+K + +       +P  ++ D   ++QI +N+ 
Sbjct: 1092 KLQLDLHPFDLEGLMRELAVVLSGNTNDKDVEVLFRMEPTLPAMLIGDKLRLQQILINLA 1151

Query: 713  SNAIHFTPSGGQII-ISTTHTSNEEV--ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
             NA+ FT  G  ++ +        EV   + V DTG+G+   +L +  + F Q   S   
Sbjct: 1152 GNALKFTTQGQVVLAVRERARREGEVELRIEVSDTGIGIAPEQLSRIFEGFTQAEASTTR 1211

Query: 770  RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF--------PLYDTSHP 816
            R  GTGLGL +++ +V+   G+  + S    G+              PL     P
Sbjct: 1212 RFGGTGLGLVISRRLVELMGGQLRVESQLGCGSRFWFDLTLGMAADQPLAQLPEP 1266



 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 50/539 (9%), Positives = 145/539 (26%), Gaps = 58/539 (10%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTWYGKTTL 149
            G +   +    +  G  A + +G  L  +           + +  + + +   + +T  
Sbjct: 370 DGVVTSWNLSAERLFGYRADEAVGQPLAKLIVPEDRRGEEVDILRRIARGERIEHFETVR 429

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL--------D 201
              +G+ L V + ++  P+        G     ++         +A  + L         
Sbjct: 430 MRKDGSLLIVSVSIS--PVLDEAGRVVGASK--VLRDLSEQKRIKAELQVLSENLEQRVA 485

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS--------------SLTEYY 247
            + + L +  +   +V      I          R+ N                  + +  
Sbjct: 486 DRTAELDQAWRTLQTVLDAVPFIIGYWDCDQINRVANHAYRTWFGIDPGALPGMRMRDLL 545

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL--SH 305
                         +   E  + E++      + +++   Y   L N+    F  +    
Sbjct: 546 GEPLYQANLPHIEAVLGGEPQVFERQICGQDGVVRHSLTTYLPDLVNDEVRGFYAIVQDI 605

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFF---VYSHGNLFYANPSFLLLTKYKSVDDIEI 362
                  +            +D            + G +  AN  F  +  Y+  + +  
Sbjct: 606 SEQVESRSRLTSALKERELLLDTINQQLLYTATDTDGRILEANDLFCQVHGYERKELL-- 663

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
             G      +  +      + +    +            T             +    A 
Sbjct: 664 --GWDHRKLSAGVHPAMFWQSLWRTIASGRVWRGEVCNQT---REGRQRWFDTVIVPHAG 718

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNRAV 481
                     +  +  + ++   ++      L ++L A S+  I   +  G++   N   
Sbjct: 719 DSGRIERYIALRIDITERKLADAELARVHGMLSNVLRAASEVAIIAADVHGVVSLFNSGA 778

Query: 482 SKLFGYPVEDILRKPFTVFLE-QNTPSVMNHYLTE------------ILSLDLRQTLEKI 528
            ++ GY   +++ +                  L++            +   +      + 
Sbjct: 779 QRMLGYSENEMVGRAMLTHFHLPEELREHGEALSQRYERQVEGLRALVQEPEASGAETRE 838

Query: 529 TLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
                K+   L + +++  +  +      Y     DI+  ++++ +L  A+   +  + 
Sbjct: 839 WTYVRKDGSQLQVSLMVTAMRDADELVVGYLAIAADITIPQRQQRELVAARDQLQLAAE 897



 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 59/420 (14%), Positives = 123/420 (29%), Gaps = 38/420 (9%)

Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH 233
           EF G  GFG     RV     A   R +++        +     E E+  I   +  P +
Sbjct: 106 EFPGLLGFGYAR--RVPPQRVAEFVRQERRDGEPGFSIRQLRPHEGERAVIVYFEPEPGN 163

Query: 234 LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293
             +     +         +         L+   + +P  ED     L          T  
Sbjct: 164 RFVIGVDIASEPSRRAAAEAALRSGQARLSEPIALMPHPEDKAQAFLLLLPVYAGGATPA 223

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTK 353
           +              P         ++     +   P    V     +     +      
Sbjct: 224 SEEGRLRAGFGWVFAPI------RAQDAMAGLMADLP-GVAVELAD-VTDGRKAVFFQGG 275

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
                 I  A  L  L            +   L        A             +SL +
Sbjct: 276 SNPAQPIAAASELQPLF----------GRDWRLSLRAGPAFA-------------DSLKL 312

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
                  ++    ++    +       R  +R++     +L +I+E + D I     +G+
Sbjct: 313 PSAALVASSGLAASVLSALLALVVGRNRQRRRELLAAQSRLAAIVEGSVDAIISKTLDGV 372

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
           + S N +  +LFGY  ++ + +P    +           +   ++    +     T+   
Sbjct: 373 VTSWNLSAERLFGYRADEAVGQPLAKLIVPEDRRGEEVDILRRIARG-ERIEHFETVRMR 431

Query: 534 KEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
           K+  LL + + I  +   +   +     + D+SE K+ K +L    +  E+  + ++  L
Sbjct: 432 KDGSLLIVSVSISPVLDEAGRVVGASKVLRDLSEQKRIKAELQVLSENLEQRVADRTAEL 491


>gi|298530006|ref|ZP_07017408.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
            thiodismutans ASO3-1]
 gi|298509380|gb|EFI33284.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
            thiodismutans ASO3-1]
          Length = 1562

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 131/848 (15%), Positives = 278/848 (32%), Gaps = 107/848 (12%)

Query: 43   NPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEEL 102
            +   +   +    +  +     T   +                 W++       E  E +
Sbjct: 269  DITAEKEARQATQELTERLRLATEAAELG--------------IWDLRISDGYLEWDEGM 314

Query: 103  PKTIGNYAFKMIG--MRLCDVSDILHIDPNNH-IGDLLKRQNTWYGKTTLWPIEGTNLYV 159
             +  G              D     + +         +  Q  +  +  +   +G   ++
Sbjct: 315  FRIYGVSRDDFTNSVKDWTDALLPEYREQAEQDFKAGIAGQGAYRSEFKIRRKDGEIRHI 374

Query: 160  PIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEK 219
                 A  I+         R  GI              ++     S + ++         
Sbjct: 375  R--AMAQSIHDETGNPV--RVVGINEDITEQKMAEQELRQERDYSSRIIQMSPAIICGIS 430

Query: 220  EKYDIFSQQSP---PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFH 276
                                +  V        +     +  +      +   +   E   
Sbjct: 431  SDGTCNYVNPAGEKVTGYSAQELVGKDWWSTLYPGSSYEQVRQLFQDMQNGPVQNHEMTL 490

Query: 277  -TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK------- 328
               + ++   +       +  +   E +   +  +     +E      + ++K       
Sbjct: 491  TRKDGHERIVEWNSLNRLDQEENLLEVVGFGHDITDRRIAEEELFKRQDELEKTTRELEG 550

Query: 329  -----CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
                   +       G +   N ++  +  Y  +++I  +  L      P+  +      
Sbjct: 551  FFDVTLGLLMIADFQGRILKLNRAWEDILGY-PLNEIARSNLLD--FVHPRDQEKTREAM 607

Query: 384  VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
              L R +         ++  Q      + + +    +               +  ++ + 
Sbjct: 608  SSLSRGE----HVRDVVNRYQHKNGGYIWVRWQASSRE------GLIYASANDITESIML 657

Query: 444  KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP-FTVFLE 502
            + ++  E   L  I++++ + I   +  G     N  V++LFG   E +L K  + +   
Sbjct: 658  QERLAQEKDFLQQIIDSSPNPIFAKDWHGRHTLANTRVAELFGTTKEAMLGKTDYDMTAT 717

Query: 503  QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL-----PFSSCYSLT 557
            Q           E++    ++ + +  L    + ++   +     L     P        
Sbjct: 718  QEEIQAFLQDDREVMQSGKQKHIPQEPLT-DSQGQVRWFQTTKVPLMLSHDPKKRQVMGI 776

Query: 558  MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
              DI+   + ++++  A++ AE  +  KSDFLA +SHEIRTP+ A+IG            
Sbjct: 777  ATDITHRIESEHQVQLAREEAEAANRAKSDFLANMSHEIRTPMNAVIGL----SQLLLQT 832

Query: 618  LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
              + R  +Y N I  S  ++L I+ND+LD SKIE+GK+ L      +DE + +  +L   
Sbjct: 833  SLDDRQRDYLNKISNSSRMLLGIINDILDYSKIEAGKLELDMHTFRMDELLDQMKTLFGS 892

Query: 678  YANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIST------- 729
             A +K + I  + + ++PRIL  D   + Q+  N+L NA+ FT  G  + ++        
Sbjct: 893  TAEDKGLEIIFNISTDVPRILKGDSLRLGQVFTNLLGNAVKFTEKG-HVELAVHKSEVRS 951

Query: 730  ---THTSNE-------------------------------EVILRVRDTGVGMTNYELEK 755
                                                     ++  ++DTG+GM + ++++
Sbjct: 952  QESEVRDQGTEVRSQDLGQGTGDRGQGLEAADRDSESKIVRLLFEIKDTGIGMDDEQVQR 1011

Query: 756  AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL--IEIIFPLYDT 813
              +PF Q   S   +  GTGLGL ++  +V    G   + STP +G+    EI  P+   
Sbjct: 1012 LFQPFSQADTSTTRKYGGTGLGLVISHKLVQRMGGTLQVDSTPGQGSRFYFEIDLPMAPE 1071

Query: 814  SH-PHDCI 820
            S    +CI
Sbjct: 1072 SETTQECI 1079



 Score =  181 bits (459), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 71/532 (13%), Positives = 159/532 (29%), Gaps = 36/532 (6%)

Query: 69  DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID 128
           DSE  F  D       + W ID  G    ++  +   +G    +++G    D        
Sbjct: 155 DSEQRFR-DVAEAAGEYIWEIDPGGTYSFLTPRVEDVLGRRVDEVLGRSPFDFMPHEEAR 213

Query: 129 PNNH-IGDLLKRQNTWYGKTTL-WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHV 186
                +    ++  +W G        +G    +   ++ +P+     E  GFRG G+   
Sbjct: 214 RVEKMLAGWAEKGESWQGLEHQSVRPDGRI--IWQRVSGMPVKDSEGELKGFRGTGL--D 269

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP----PPHLRMKNKVSS 242
              + + R   + L ++     E  +      +                   R     S 
Sbjct: 270 ITAEKEARQATQELTERLRLATEAAELGIWDLRISDGYLEWDEGMFRIYGVSRDDFTNSV 329

Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDF--HTINLNQYTKKQYFGTLQNNSKESF 300
                A   +  +  +             + +F     +      +    ++ + +    
Sbjct: 330 KDWTDALLPEYREQAEQDFKAGIAGQGAYRSEFKIRRKDGEIRHIRAMAQSIHDETGNPV 389

Query: 301 EYLSHRNHPS----LSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYK 355
             +      +          +  + +   +   P     + S G   Y NP+   +T Y 
Sbjct: 390 RVVGINEDITEQKMAEQELRQERDYSSRIIQMSPAIICGISSDGTCNYVNPAGEKVTGYS 449

Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
           + + +      STL         ++ + V     D           T+     +   + +
Sbjct: 450 AQE-LVGKDWWSTLY------PGSSYEQVRQLFQDMQNGPVQNHEMTLTRKDGHERIVEW 502

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKR-------KMEIEVMQLCSILEATSDGIAII 468
               + +Q    +   G   +  D RI +        ++E    +L    + T   + I 
Sbjct: 503 NSLNRLDQEENLLEVVGFGHDITDRRIAEEELFKRQDELEKTTRELEGFFDVTLGLLMIA 562

Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528
           + +G IL  NRA   + GYP+ +I R     F+           ++ +   +     + +
Sbjct: 563 DFQGRILKLNRAWEDILGYPLNEIARSNLLDFVHPRDQEKTREAMSSLSRGE--HVRDVV 620

Query: 529 TLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
                K    + +R              + +DI+E    + +L+  K   ++
Sbjct: 621 NRYQHKNGGYIWVRWQAS--SREGLIYASANDITESIMLQERLAQEKDFLQQ 670



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/291 (8%), Positives = 84/291 (28%), Gaps = 15/291 (5%)

Query: 310 SLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
                 ++ E    +  +      + +   G   +  P    +   +  + +  +     
Sbjct: 148 RNEKRLEDSEQRFRDVAEAAGEYIWEIDPGGTYSFLTPRVEDVLGRRVDEVLGRSP---- 203

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
             D     +   ++ ++   +++          +++ +    +          +   E  
Sbjct: 204 -FDFMPHEEARRVEKMLAGWAEKGESWQGLEHQSVRPDG-RIIWQRVSGMPVKDSEGELK 261

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
              G   +    +  ++  +    +L    EA   GI  +      L  +  + +++G  
Sbjct: 262 GFRGTGLDITAEKEARQATQELTERLRLATEAAELGIWDLRISDGYLEWDEGMFRIYGVS 321

Query: 489 VEDILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
            +D     K +T  L               ++       E       K+ ++  +R + +
Sbjct: 322 RDDFTNSVKDWTDALLPEYREQAEQDFKAGIAGQGAYRSEFKI--RRKDGEIRHIRAMAQ 379

Query: 547 KLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
            +   +           DI+E K  + +L   +  + +        +  +S
Sbjct: 380 SIHDETGNPVRVVGINEDITEQKMAEQELRQERDYSSRIIQMSPAIICGIS 430


>gi|94266210|ref|ZP_01289919.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like:CHASE
           [delta proteobacterium MLMS-1]
 gi|93453217|gb|EAT03675.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like:CHASE
           [delta proteobacterium MLMS-1]
          Length = 794

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 123/690 (17%), Positives = 251/690 (36%), Gaps = 25/690 (3%)

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRN-REFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
              ++P EG    + +DL   P+     R         I     +     AL  R+    
Sbjct: 109 IRYVYPREGNEEALGMDLYNHPVQGAATRRMMEAGTMVIAGPVTLVQGGEALIVRIPIFH 168

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV-SSLTEYYAHKDDVLKTEKYPLLT 263
            +  + ++ +  +     D+             +++  +L  +     +       P L 
Sbjct: 169 ENQADGRRAYWGMTSIPVDLDGFYQRVGLQETASRLQIALRGHDGLGAEGEVFFGDPNLF 228

Query: 264 SEESSLPEQEDFHTINLNQ---------YTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
           + E  +   +                     ++    L          L      +    
Sbjct: 229 AAEPVIQRVDLLAGSWQLAGKPPGGWQVPWSQRLPWLLGGLLGALLVGLVGGKLTAQRER 288

Query: 315 FDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
               E    E V+        +   G + + N     L  Y   + +  +   S  +   
Sbjct: 289 LRHSEAGYRELVENVNSIVLRWRADGTITFINEYGARLFGYTPGELVGRSVVGS--IVPE 346

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
             S    +  +M+  +             I  +      +++      +     +    I
Sbjct: 347 TESSGRDLAAMMVDIAQHPENYHDNENENICLDGSRP-WISWNNRAVRDNGGATVEVLSI 405

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE--GIILSTNRAVSKLFGYPVED 491
             +    R  +  ++    +  +++      +     E    +   +  +  + GYP  +
Sbjct: 406 GRDHTQRRRIELALKNSERRFRTMVGHIYGAVYRCLPESPWAVEFVSEPIGDITGYPARE 465

Query: 492 IL--RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
            +  R+     +       + H +++ ++      LE   + + + E+ +  R       
Sbjct: 466 FMEGRRNLEEIIHPAERDRIAHEVSQAVAEGRPYVLEYRIINNERVERWVHERGQAVVDE 525

Query: 550 FSSCYS-LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
               +    + DI+  K+E+ +L  A+  A+  +  KS+FLA +SHE+RTPL AIIG+SE
Sbjct: 526 DGVTWLDGVIFDITNRKREERELVEARDAAKAANQAKSNFLANMSHELRTPLNAIIGYSE 585

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
           ++  +     G     E    I  +   +L ++N++LD SK ESG+++L  E   LDE +
Sbjct: 586 ILLEEA-EEHGLEGCAEDIQRIREAARHLLGLINEVLDFSKTESGRISLTMEECDLDELL 644

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
           +  + +++    E+   +       +  I  D   ++QI  N+LSNA  FT  G  I + 
Sbjct: 645 AAVVDIIRPLLPERENRLLVEAEEELGTIRTDGTRLRQILYNLLSNAAKFTEKGF-ITLR 703

Query: 729 TTH---TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
           T        E V + ++DTG+G++  + +K  KPF Q  +S   R  GTGLGL +++   
Sbjct: 704 TRRLMRDGGEWVEIDIQDTGIGISEEQQKKLFKPFTQADSSISRRFGGTGLGLAISRYFC 763

Query: 786 DANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
               G   + STP +G+   +  P+   + 
Sbjct: 764 RMMGGDIALVSTPGQGSTFTVSLPVSPDNQ 793



 Score = 54.3 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 43/392 (10%), Positives = 97/392 (24%), Gaps = 31/392 (7%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL-----KRQN 141
           W   A G +  I+E   +  G    +++G  +              +  ++       +N
Sbjct: 310 WR--ADGTITFINEYGARLFGYTPGELVGRSVVGSIVPETESSGRDLAAMMVDIAQHPEN 367

Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
               +     ++G+     I      +             G    +          K  +
Sbjct: 368 YHDNENENICLDGS--RPWISWNNRAVRDNGGATVEVLSIG--RDHTQRRRIELALKNSE 423

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
           ++F  +     G              +SP     +   +  +T Y A +    +     +
Sbjct: 424 RRFRTMVGHIYGAVY-------RCLPESPWAVEFVSEPIGDITGYPAREFMEGRRNLEEI 476

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
           +   E      E    +          +  + N   E + +   +              +
Sbjct: 477 IHPAERDRIAHEVSQAV-AEGRPYVLEYRIINNERVERWVHERGQAVVDEDGVTWLDGVI 535

Query: 322 TPETVDKCPIPFFVYSHGNLFYANPS---FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
              T  K      V +      AN +   FL    ++    +    G S +L        
Sbjct: 536 FDITNRKREERELVEARDAAKAANQAKSNFLANMSHELRTPLNAIIGYSEILLEEAEEHG 595

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
                  + R           ++ +    +       +  E+ +          I    +
Sbjct: 596 LEGCAEDIQRIREAARHLLGLINEVLDFSKTESGRISLTMEECDLDELLAAVVDIIRPLL 655

Query: 439 DTRINKRKMEIEVM---------QLCSILEAT 461
             R N+  +E E           +L  IL   
Sbjct: 656 PERENRLLVEAEEELGTIRTDGTRLRQILYNL 687


>gi|313674518|ref|YP_004052514.1| pas/pac sensor hybrid histidine kinase [Marivirga tractuosa DSM
           4126]
 gi|312941216|gb|ADR20406.1| PAS/PAC sensor hybrid histidine kinase [Marivirga tractuosa DSM
           4126]
          Length = 1296

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 136/736 (18%), Positives = 270/736 (36%), Gaps = 41/736 (5%)

Query: 98  ISEELPKTIGNYAFKM---IGMRLCDVSDILHIDPNNHI--GDLLKRQNTWYGKTTLWPI 152
           I+E     +G    ++      +  D+     +D   +       K    +  +  L   
Sbjct: 167 INEYYANALGYSYDELKQLSLTKWSDLVHPEDMDVMTNFFDNQKDKPVIHYEFEIRLKHK 226

Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212
           EG   ++ +         +      ++  GI+              R        + I K
Sbjct: 227 EGH--WIWVLNNGRVEGLKPGLMPIYQS-GIILEISERKKAEKELDRTKALLLQTNSITK 283

Query: 213 GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ 272
                                +    +    +        V       L ++ E S  + 
Sbjct: 284 TGGWSWNLITGEIEWTENTRSICEVEENYQPSYEGVFDFVVDSARVENLKSTLEESFQKH 343

Query: 273 EDF------HTINLNQYTKKQYFGTLQNN---SKESFEYLSHRNHPSLSAYFDEGENLTP 323
           + F       +   N +  +       ++    +      +  +         E      
Sbjct: 344 QQFDLELQVRSGKGNVFWARIIGIPEISDNKVQRLYGTIQNIDDQKKNEFQLQEKTKQYN 403

Query: 324 ETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
           E V+  PI  + +  +G L Y +P F  +        +E     +       +   +   
Sbjct: 404 ELVENIPIGVYKLNRNGELNYMSPPFKKMIG------VEGRDIDTNDFAHDIVHPEDLEL 457

Query: 383 PV-MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
            +     +       +     +   +   +  T  P +  +         G   +    +
Sbjct: 458 FLKANNYALDNYQYFNLEFRIVVKGQTKWVKATSQPSKDLDGN---WYWFGTLSDITQRK 514

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF- 500
             + K++    QL +I+ + ++ +   + +GII S N + +K+      +++ K      
Sbjct: 515 NTELKVQENERQLQNIISSMNEALLFYDSKGIIRSMNDSAAKILELDKFEVVGKRLMSTP 574

Query: 501 -----LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII--KKLPFSSC 553
                +  N  S   H +   L          + L +TK EK + +   I   +   +  
Sbjct: 575 IKLLDVNGNFISAEQHPVAIALEEKKSLNDVTVQLLNTKTEKTIWIAANIKIIEEEDAQW 634

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
             +T +DIS   + + +L  AKK AE  +  KS FLA +SHEIRTPL  +IGFS++++  
Sbjct: 635 ALVTFNDISNRVKSEKQLLEAKKSAEAANQAKSTFLANMSHEIRTPLNGVIGFSDLLRKT 694

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
               L      +Y  +I  S + +L I+ND+LD SKIE+GK+ L  E ++  E V  A+S
Sbjct: 695 NLNIL----QTDYTQHIYNSAHSLLGIINDILDFSKIEAGKLKLQMEEINGLELVESAVS 750

Query: 674 LVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
            +   A++K + +   +  ++P    AD   ++QI +N+L NA+ FT SG   +  T   
Sbjct: 751 FITFQASQKNLELLIEYDPDVPIYFEADELRLRQILINLLGNAVKFTESGNIALKVTKLH 810

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
             +++   V DTG+G++  + +   + F Q   S   +  G+GLGL ++  ++     + 
Sbjct: 811 KEDKLKFEVIDTGIGISAKQQKNIFRAFEQADVSTTRKFGGSGLGLTISNKLLKMMQSRL 870

Query: 793 YIFSTPAKGTLIEIIF 808
           ++ S   KG+      
Sbjct: 871 HLESEVNKGSNFSFSI 886


>gi|316935268|ref|YP_004110250.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           DX-1]
 gi|315602982|gb|ADU45517.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           DX-1]
          Length = 1157

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 111/665 (16%), Positives = 230/665 (34%), Gaps = 42/665 (6%)

Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS 242
           +              + L        +I +  + +       F            + V  
Sbjct: 224 VYRSGDPIATEEQRRRALIGWAFTAIDIYQILADLHSATG-AFGFTLTDDGGAPFHTVGR 282

Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302
             +          +      T            ++++L                  S   
Sbjct: 283 PQDVGMSLPAREISFAIYGRTWHIQIWALPPFVNSLSLPSPWLGFTVTLALGFLLTSLVN 342

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIE 361
           L         A  D   +      +         S  G +   N +   L  Y + + I 
Sbjct: 343 LQISYKAR-RAEHDIARSRLAAIFESSNDAIIAKSVDGTVVDWNKAAERLFGYSAEEAIG 401

Query: 362 IA-----------GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
                           + +    +     +       + +   +  +  +  I+    + 
Sbjct: 402 RPTTELIVPESLWDEENRIFADIRDGQKVSHFRTKRNKRNGDPVDVAVSVSPIRCEDGS- 460

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ--LCSILEATSDGIAII 468
           L                  +       ++ ++ +R  ++E       +ILE  +  +   
Sbjct: 461 LIGIATAARDITDLVAAEHKIRNLNAWLERQVAERTAQLEKTLTLQSAILERAAYAVIAT 520

Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN-HYLTE------------ 515
           +  G I   N A  ++ GY  ED++ +   +              L +            
Sbjct: 521 DVTGTITLFNPAAERMLGYAAEDLIGRATAMLFHDPDELAARADALRQEGVDVGSNLGVL 580

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKL 571
              L        +      E   + +R+ + +L               D++E  + +N+L
Sbjct: 581 RARLARSDPDTAVWTYINAEGGRIPVRLTLSRLRTKDGTDLGVLGIAVDLTEQLKYENEL 640

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
             A+  AEK  + K++FLA +SHEIRTPL  IIG+++++   +   L   R       I 
Sbjct: 641 KAARASAEKAGAAKANFLANMSHEIRTPLNGIIGYADLVLEDQTLALDTRRQ---VIRIF 697

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
            + + +  I++D+LD SKIE+  + L  +P+ +++ +   +S++Q  A +K + +R    
Sbjct: 698 EASDSLRVIIDDILDFSKIEALGVTLESKPLYVEQLIDNCMSIIQRKAEKKGLELRVDAQ 757

Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQ---IIISTTHTSNEEVILRVRDTGVGM 748
                ++ D   ++Q+ LN+L+NA+ FT +G     +   +       + + V DTG+G+
Sbjct: 758 EIPAVLMGDGARLRQVLLNLLNNAVKFTDAGSVELNVACLSRVGDRARLRITVTDTGIGI 817

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL--IEI 806
           +  + +   K F Q   +   +  GTGLGL +++ +V A  G+  I S P +G+    EI
Sbjct: 818 SAQDQKGLFKRFSQADETISRKYGGTGLGLAISQRIVQAMGGEIGIDSAPGRGSTFYFEI 877

Query: 807 IFPLY 811
             P+ 
Sbjct: 878 ELPIA 882



 Score = 99.7 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 52/499 (10%), Positives = 126/499 (25%), Gaps = 46/499 (9%)

Query: 96  KEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG-----KTTLW 150
              S  L   +     +     +  V+        +    L     ++       +  + 
Sbjct: 36  TVASALLSALVAYGVAE---QNVRTVARKFDALAADLTDQLEDNLGSYRFGLLAARGVVV 92

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
              G ++               REF G RGFG V      +    + +R           
Sbjct: 93  ASGGESISFDTFHRYAETRDFLREFPGARGFGFVRPVEPQDVAAFVAQRRAGGQPTYKVS 152

Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270
           +       +                  +  S  +   A        E       E   + 
Sbjct: 153 QLAPHDGTRYLVTYLEPSHINAVAYGIDLASESSRKTAADAAAATGEATMTAPIELLPIS 212

Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330
             +    I L  Y       T +   +    +                            
Sbjct: 213 GMDSGVLILLPVYRSGDPIATEEQRRRALIGWAFTAIDIYQILADLHSATGA-------- 264

Query: 331 IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390
             F +   G   +                +     +   L A ++S     +   +    
Sbjct: 265 FGFTLTDDGGAPFHT--------------VGRPQDVGMSLPAREISFAIYGRTWHIQIWA 310

Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450
                 ++      W                           +    +  +  + + +I 
Sbjct: 311 LPPF-VNSLSLPSPWLGFTVTL------------ALGFLLTSLVNLQISYKARRAEHDIA 357

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT-PSVM 509
             +L +I E+++D I   + +G ++  N+A  +LFGY  E+ + +P T  +   +     
Sbjct: 358 RSRLAAIFESSNDAIIAKSVDGTVVDWNKAAERLFGYSAEEAIGRPTTELIVPESLWDEE 417

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQE 567
           N    +I                  +   +++ +   +    S    +    DI++    
Sbjct: 418 NRIFADIRDGQKVSHFRTKRNKRNGDPVDVAVSVSPIRCEDGSLIGIATAARDITDLVAA 477

Query: 568 KNKLSHAKKIAEKESSHKS 586
           ++K+ +     E++ + ++
Sbjct: 478 EHKIRNLNAWLERQVAERT 496



 Score = 64.7 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 21/258 (8%), Positives = 50/258 (19%), Gaps = 21/258 (8%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI-DPNNHIGDLLKRQNTWYGKTTLW 150
            G + + ++   +  G  A + IG    ++     + D  N I   ++         T  
Sbjct: 378 DGTVVDWNKAAERLFGYSAEEAIGRPTTELIVPESLWDEENRIFADIRDGQKVSHFRTKR 437

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFG-------------------IVHVNRVDN 191
                +  V + ++  PI   +    G                        +        
Sbjct: 438 NKRNGD-PVDVAVSVSPIRCEDGSLIGIATAARDITDLVAAEHKIRNLNAWLERQVAERT 496

Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD 251
                   L              + V                   ++ +   T    H  
Sbjct: 497 AQLEKTLTLQSAILERAAYAVIATDVTGTITLFNPAAERMLGYAAEDLIGRATAMLFHDP 556

Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
           D L      L                           +  +          L+     + 
Sbjct: 557 DELAARADALRQEGVDVGSNLGVLRARLARSDPDTAVWTYINAEGGRIPVRLTLSRLRTK 616

Query: 312 SAYFDEGENLTPETVDKC 329
                    +  +  ++ 
Sbjct: 617 DGTDLGVLGIAVDLTEQL 634



 Score = 54.6 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 34/304 (11%), Positives = 74/304 (24%), Gaps = 37/304 (12%)

Query: 80  PRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR 139
            R        D  G +   +    + +G  A  +IG     +      D      D L++
Sbjct: 511 ERAAYAVIATDVTGTITLFNPAAERMLGYAAEDLIGRATAMLFH--DPDELAARADALRQ 568

Query: 140 QNTWYG---------------KTTLW-PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI 183
           +    G                T +W  I      +P+ L    + +++    G  G  +
Sbjct: 569 EGVDVGSNLGVLRARLARSDPDTAVWTYINAEGGRIPVRLTLSRLRTKDGTDLGVLGIAV 628

Query: 184 VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL 243
                         K            K    +           ++P   +     +   
Sbjct: 629 --DLTEQLKYENELKAARASAEKAGAAKANFLANMSH-----EIRTPLNGIIGYADLVLE 681

Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYF-----------GTL 292
            +  A          +    S    + +  DF  I     T +                +
Sbjct: 682 DQTLALDTRRQVIRIFEASDSLRVIIDDILDFSKIEALGVTLESKPLYVEQLIDNCMSII 741

Query: 293 QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLT 352
           Q  +++    L        +    +G  L    ++           G++   N + L   
Sbjct: 742 QRKAEKKGLELRVDAQEIPAVLMGDGARLRQVLLNLLNNAVKFTDAGSVEL-NVACLSRV 800

Query: 353 KYKS 356
             ++
Sbjct: 801 GDRA 804


>gi|20090134|ref|NP_616209.1| sensory transduction histidine kinase [Methanosarcina acetivorans
            C2A]
 gi|19915115|gb|AAM04689.1| sensory transduction histidine kinase [Methanosarcina acetivorans
            C2A]
          Length = 1456

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 101/724 (13%), Positives = 237/724 (32%), Gaps = 34/724 (4%)

Query: 96   KEISEELPKTIGNYAFKMIGM--RLCDVSDILH-IDPNNHIGDLLKRQNTWYGKTTLWPI 152
               S+E+ +  G    +                 +  ++ + +      T+     +   
Sbjct: 744  LFWSDEIYRIFGFRPQEFCATYDSFLSYVHPEDRVLVDDAVKEAF-NGKTYSIDHRIIRA 802

Query: 153  EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212
            +G    +  +     ++   RE    +  G V             +   K    L E   
Sbjct: 803  DG-KERIVHEQ-GEVVFD--RENVPVQMKGTVQDVTERKLAEKTLELASKYNRSLIEASL 858

Query: 213  GHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
                       I    S             + +    Y  + +  K     +        
Sbjct: 859  DPLVTIGADGKITDVNSSTETITGYSRDELIGTDFSDYFTEPEKAKEGYRHVFQKGLVRD 918

Query: 270  PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
               E  H  + +           ++   E     +     +     +E        V+  
Sbjct: 919  YPLEVLHR-DRHITHVLYNASVYRDEIGEVIGVFAAARDITELKKAEEKIKTLVSAVESS 977

Query: 330  PIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388
                   S  G +   N     +  Y + + +     +   L+   L          + +
Sbjct: 978  DDAVITMSLDGMITSWNKGAERVYGYPAEEILGKKMSV---LEPANLKGEIKQLIERIKQ 1034

Query: 389  SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
             +      + RL          + ++       +   + +  + I  +  + +  +  + 
Sbjct: 1035 GEGINHYETVRL----KKDSTLVDISVALSPVFDDSGKIIALSAIARDITERKKAEEALR 1090

Query: 449  IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
            +  +   S+LEA+ D +  I  +G I   N+A  ++ GY   +++   FT +  +  P  
Sbjct: 1091 LSNIYNRSLLEASLDPLVTIGPDGKITDVNKATEQITGYSRGELIGTDFTNYFTE--PEK 1148

Query: 509  MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQ 566
                  ++                      +     I +              D++E K+
Sbjct: 1149 AKEGYQQVFRKGAVLDYALEIQHRNGSVTPVLYNASIYRDESGQVIGVFAAARDVTELKK 1208

Query: 567  EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
             +  L    +   +  +    F    SH+++ PL  I  + ++++ +  G L + R  +Y
Sbjct: 1209 AEKILELKLEELARSKADLEQFAYVSSHDLQEPLRMIASYLQLLQRRYQGEL-DERADKY 1267

Query: 627  ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
              +     + +  ++NDLL+ S++ +      FEP   +  ++  +S +++   E    +
Sbjct: 1268 IYFAVDGASRMQSLINDLLEFSRVTTKAR--EFEPTDCESILNYVLSDLEVSIKENEATV 1325

Query: 687  RTSFANNIPRILADLRSVKQIALNILSNAIHF-TPSGGQIIISTTHTSNEEVILRVRDTG 745
                  ++P I+AD   + Q+  N++SNAI F +    +I +S     ++     V+D G
Sbjct: 1326 SYD---SLPEIMADGTQLTQVFQNLISNAIKFRSKEAPKIHVSAEKEDDKW-RFSVQDNG 1381

Query: 746  VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
            +G+     EK  + F ++    +    GTG+GL + K +++ + G  ++ S P +G+   
Sbjct: 1382 IGINPKYSEKIFEVFKRLHK--REEYPGTGIGLSICKKIIERHGGDIWVKSEPGRGSTFY 1439

Query: 806  IIFP 809
               P
Sbjct: 1440 FTLP 1443



 Score =  102 bits (254), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 63/561 (11%), Positives = 162/561 (28%), Gaps = 69/561 (12%)

Query: 51  QSNFTDQNQESVSNTNYLDSENTFVFD--PIPRTVRFTWNIDAHGYLKEISEELPKTIGN 108
           +   + + + +         +  + FD  P    +     +D    +   +  +   +G 
Sbjct: 190 EQIESSKRKRAEETALQAAKDWKYTFDAVPDLIAI-----LDTEYRIVRANRAMAAKLGV 244

Query: 109 YAFKMIGMRLCDVSDILHIDPNNHI---GDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAA 165
              + +G+           D          LLK +     +     + G        ++ 
Sbjct: 245 TPEECVGLTCYHAIH--GTDEPPSFCPHRQLLKDELEHTTEVCEDCLGGC-----FLVSV 297

Query: 166 LPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF 225
            P+Y       G     +                                    E Y+  
Sbjct: 298 SPLYDSKGNLIG--SVHVARDITERKQTEETL---------------------FEAYENI 334

Query: 226 SQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTK 285
             QS   H + +   +   E +A  ++++KT +  + + +       E     N    + 
Sbjct: 335 QVQSEELHAQAEELQAQNEELHAQAEELMKTNEALIESKKRF-----ELLSEANAFLLSS 389

Query: 286 KQYFGTLQNNSKESFEYL----------SHRNHPSLSAYFDEGENLTPETVDKCPIPFFV 335
           K+   T+   ++    YL             N                + ++       +
Sbjct: 390 KEPETTILTIAENVMRYLKCDVFFNYVFDRENGKLHLNACGGISAEAAKEIEWLDKGVAI 449

Query: 336 Y----SHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390
                  G  +     +  +   +    D+  + G+      P       I  +      
Sbjct: 450 CGCVARDGCRIV----AEDVQYNWDKRADLVRSMGIQAYACHPLHVGETTIGTLSFGTKS 505

Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE---NMPQNGIEPEDVDTRINKRKM 447
           R                + S+A+     E+A         +    ++ +  +       +
Sbjct: 506 RKDFKEDELALMKTVADQVSVAIERKRAEEALSEAYENLQVQSEELQAQSEELNEAYELL 565

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF-LEQNTP 506
                +  ++ E + D IA  +R+   L  N A ++ +G   E+I+ K  +   ++    
Sbjct: 566 RKSEKRFRTLAENSPDVIARFDRQNRHLYVNPAATEPYGRSPEEIIGKTNSELGMDPELV 625

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISEWK 565
           +    +   + +    + +E   +  + +E   S RI+ + +    +       DI++ K
Sbjct: 626 TFWEGHYQTVFASGKTEKMEFHYISPSGKEYYFSTRIVPEFVDGEVTSVLAISRDITDIK 685

Query: 566 QEKNKLSHAKKIAEKESSHKS 586
           + + +L  A+   +K    ++
Sbjct: 686 EAEIELKEARDNLKKLVEKRT 706



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 34/377 (9%), Positives = 93/377 (24%), Gaps = 29/377 (7%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            I A G + +++       G    ++IG    D               + ++         
Sbjct: 864  IGADGKITDVNSSTETITGYSRDELIGTDFSDYFTEPEKAKEG-YRHVFQKGLVRDYPLE 922

Query: 149  LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
            +   +    +V  + +         E  G   F                K L        
Sbjct: 923  VLHRDRHITHVLYNASV--YRDEIGEVIGV--FAAARDITELKKAEEKIKTLVSAVESSD 978

Query: 209  EI-----KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
            +        G  +   +  +          L  K  V            +++  K     
Sbjct: 979  DAVITMSLDGMITSWNKGAERVYGYPAEEILGKKMSVLEPANLKGEIKQLIERIKQ---- 1034

Query: 264  SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT- 322
              E     +      +            + ++S +     +     +     +E   L+ 
Sbjct: 1035 -GEGINHYETVRLKKDSTLVDISVALSPVFDDSGKIIALSAIARDITERKKAEEALRLSN 1093

Query: 323  ---PETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
                  ++    P   +   G +   N +   +T Y   + I      +     P+ +  
Sbjct: 1094 IYNRSLLEASLDPLVTIGPDGKITDVNKATEQITGYSRGELIGT--DFTNYFTEPEKAKE 1151

Query: 379  NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
               +            A       IQ    +   + +      ++  + +       +  
Sbjct: 1152 GYQQVFR-------KGAVLDYALEIQHRNGSVTPVLYNASIYRDESGQVIGVFAAARDVT 1204

Query: 439  DTRINKRKMEIEVMQLC 455
            + +  ++ +E+++ +L 
Sbjct: 1205 ELKKAEKILELKLEELA 1221



 Score = 81.2 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 63/201 (31%), Gaps = 15/201 (7%)

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
           E    +  +              +A  D IAI++ E  I+  NRA++   G   E+ +  
Sbjct: 193 ESSKRKRAEETALQAAKDWKYTFDAVPDLIAILDTEYRIVRANRAMAAKLGVTPEECVGL 252

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--C 553
                +             ++L  +L  T E   +          + +        +   
Sbjct: 253 TCYHAIHGTDEPPSFCPHRQLLKDELEHTTE---VCEDCLGGCFLVSVSPLYDSKGNLIG 309

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI---RTPLTAIIGFSEVI 610
                 DI+E KQ +  L      A +    +S+ L   + E+      L A    +E +
Sbjct: 310 SVHVARDITERKQTEETLF----EAYENIQVQSEELHAQAEELQAQNEELHA---QAEEL 362

Query: 611 KNQRFGPLGNPRYIEYANYID 631
                  + + +  E  +  +
Sbjct: 363 MKTNEALIESKKRFELLSEAN 383


>gi|332701531|ref|ZP_08421619.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332551680|gb|EGJ48724.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 840

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 120/592 (20%), Positives = 224/592 (37%), Gaps = 34/592 (5%)

Query: 238 NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297
            +V+ L           +      + + E    E+      + +Q       G +++ + 
Sbjct: 101 RRVTVLKADGVTPVKREEWPLVRTIATGEVVKEEELVILRPDGSQVPILCNAGPIRDEAG 160

Query: 298 ESFE----YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLT 352
                   ++       L   F E E       D+  +     +  G     N  +  + 
Sbjct: 161 NIRGGMLFWVDITTQKQLRDSFRESEERFRAIFDQAAVGMAQTAPDGRFLRVNAKYCEML 220

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
            Y S +++        +       ++   + V++ R     I A +         +  + 
Sbjct: 221 GYSS-EELANLSIYDVIY-----PEDLEEERVLIQRLLDGDIPAYSLARRCYRKNKTIVW 274

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG 472
                        E      ++ +    R  +  +     +  ++ E + D IA I R+ 
Sbjct: 275 TEVTASVVRKPSGEPDYVISVKVDISQRRKAEELLLRREQEYRNLAENSPDIIARIGRDM 334

Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVF-LEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
             L  N A  ++ G P   I+ K                  +  + S    +T E     
Sbjct: 335 RYLYINPAGGRIRGAPPAHIIGKTVYQLGYTHEFSKRAEKRVARLFSTGKEETFEYEFSS 394

Query: 532 STKEEKLLSLRIIIKKLPFSSCYSLTM--HDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
           S    ++   RI+ ++       S  +   DI++ K  +++L  AK+ AE+ +  KS FL
Sbjct: 395 SLTGSRIFQARIVPERDKHGDVESALIISRDITDLKLMESELKAAKEAAEEANRTKSQFL 454

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
           A +SHEIRTP+  IIG +E+          N     Y     +S   +L I+ND+LD++K
Sbjct: 455 ANMSHEIRTPMNGIIGMTEL----ALASCANVDCSTYLGMARKSARNLLGIINDILDLAK 510

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIA 708
           IESGK+ +         ++    + + L A  K +        N+P R+  D R + Q+ 
Sbjct: 511 IESGKVEIEEYAFDARASLEALFATMALDAERKGLRFDARIDANVPVRLKGDERRLLQVF 570

Query: 709 LNILSNAIHFTPSGGQIIIST------------THTSNEEVIL--RVRDTGVGMTNYELE 754
            N++ NA+ FT  GG I +              +      V L   V DTG+G+   ++ 
Sbjct: 571 TNLIGNAVKFTLEGG-IAVKVLVADPVSLGLLESCPDPAAVCLFASVSDTGIGIPADQIG 629

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           +  + F Q+     ++ +GTGLGL ++K +V+   GK ++ S P KG+    
Sbjct: 630 RIFESFAQVGGLAHLKFDGTGLGLSISKRLVELMGGKLWVESEPGKGSTFTF 681



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/237 (8%), Positives = 59/237 (24%), Gaps = 7/237 (2%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
                G    ++ +  + +G  + ++  + + DV     ++    +   L   +      
Sbjct: 202 QTAPDGRFLRVNAKYCEMLGYSSEELANLSIYDVIYPEDLEEERVLIQRLLDGDIPAYSL 261

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                      V  ++ A  +   + E        +            L  R ++++ +L
Sbjct: 262 ARRCYRKNKTIVWTEVTASVVRKPSGEPDYVISVKV--DISQRRKAEELLLRREQEYRNL 319

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYA---HKDDVLKTEKYPLL 262
            E      +                 +R      +   T Y     H+      ++   L
Sbjct: 320 AENSPDIIARIGRDMRYLYINPAGGRIRGAPPAHIIGKTVYQLGYTHEFSKRAEKRVARL 379

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
            S       + +F +        +      ++   +    L      +     +   
Sbjct: 380 FSTGKEETFEYEFSSSLTGSRIFQARIVPERDKHGDVESALIISRDITDLKLMESEL 436


>gi|152995118|ref|YP_001339953.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1]
 gi|150836042|gb|ABR70018.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1]
          Length = 1121

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 105/525 (20%), Positives = 201/525 (38%), Gaps = 21/525 (4%)

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEI 362
           S   +  L       E     T+D        + S G +   N +   +  ++  + I  
Sbjct: 256 SQLRYRQLLLEKTASEVRLKTTLDTAVDGIISIDSLGIIKEFNKAATKIFGWQEEEIINQ 315

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
             G   L       + N          + T       +H I            +   K +
Sbjct: 316 HFG--ALFPQKYTDEFNRSLAAFRNTGEVTIAGTEREIHAINKTGHIFP--IRLGVGKVD 371

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA--IINREGIILSTNRA 480
               +    G   +    +  +  ++    Q  S+++         +++     +  + A
Sbjct: 372 IPDSDTLFVGFITDISTRKSLEETIKKSEKQFSSLIKNIPGASFRCLMDEHWTTIFVSDA 431

Query: 481 VSKLFGYPVEDILRKPFTV--FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
           +  + G+   +   K  +    +  +    +   + E  +      L        K+   
Sbjct: 432 IYDVTGWSTSEFYSKTISFAKLVHPDDEENVASTIKEATNTRKSYKL--EYRLRHKDGHY 489

Query: 539 LSL----RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
           + +     +I+ K          + DIS+  + +++L  AK  AE     K+ FLA +SH
Sbjct: 490 VWVLENGSVILNKHGKPEWIDGVILDISQRVEMEDELRQAKAKAEASVESKASFLANMSH 549

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           EIRTP+ AIIGFS+++              ++ + I +S   +L ++ND+LD +K+E  K
Sbjct: 550 EIRTPMNAIIGFSDILLESEISGEN----KKHLSIISKSARSLLHLLNDILDSAKLEKNK 605

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILS 713
           + L  +P  L  +V   IS + L A  K + +  +   ++          ++Q+ +NIL 
Sbjct: 606 LELDIQPFVLANSVDTVISTLWLQARNKGLELNFNIEKDVAVAYLGAEDRIRQVLMNILG 665

Query: 714 NAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
           NA+ FT  G  + ++     + ++   V D+G+G+    L     PF Q   S   R  G
Sbjct: 666 NAVKFTEKG-HVTLNVLKLQDGKIRFSVTDSGIGIPEERLTHIFDPFTQADASMSRRFGG 724

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
           TGLG  ++K +V    G+ ++ S    G+      PL +T  P D
Sbjct: 725 TGLGTSISKQLVTLMGGQIHVTSEAEVGSCFFFDLPLTETEAPSD 769



 Score = 46.6 bits (109), Expect = 0.018,   Method: Composition-based stats.
 Identities = 46/361 (12%), Positives = 98/361 (27%), Gaps = 30/361 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY---- 144
           ID+ G +KE ++   K  G    ++I      +    + D  N      +          
Sbjct: 288 IDSLGIIKEFNKAATKIFGWQEEEIINQHFGALFPQKYTDEFNRSLAAFRNTGEVTIAGT 347

Query: 145 -GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +       G    + + +  + I   +  F GF     +             K+ +K+
Sbjct: 348 EREIHAINKTGHIFPIRLGVGKVDIPDSDTLFVGF-----ITDISTRKSLEETIKKSEKQ 402

Query: 204 FSHLHEIKKGHS--------SVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255
           FS L +   G S               D     +        +K  S  +     D+   
Sbjct: 403 FSSLIKNIPGASFRCLMDEHWTTIFVSDAIYDVTGWSTSEFYSKTISFAKLVHPDDEENV 462

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
                  T+   S   +      + +     +    + N   +           S     
Sbjct: 463 ASTIKEATNTRKSYKLEYRLRHKDGHYVWVLENGSVILNKHGKPEWIDGVILDISQRVEM 522

Query: 316 DEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
           ++         +                +  SFL    ++    +    G S +L   ++
Sbjct: 523 EDELRQAKAKAEAS------------VESKASFLANMSHEIRTPMNAIIGFSDILLESEI 570

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
           S  N     ++ +S R+ +     +       +N L +   PF  AN     +    ++ 
Sbjct: 571 SGENKKHLSIISKSARSLLHLLNDILDSAKLEKNKLELDIQPFVLANSVDTVISTLWLQA 630

Query: 436 E 436
            
Sbjct: 631 R 631


>gi|220908654|ref|YP_002483965.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219865265|gb|ACL45604.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 1433

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 138/845 (16%), Positives = 269/845 (31%), Gaps = 79/845 (9%)

Query: 22   TQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPR 81
            + +L +++ D   E  K++ E    +       +    + +S           +F     
Sbjct: 305  SAELRRQQADQSLEALKNELEKKVAERTAALEDSQARLDRLSENL-----PGMIF----- 354

Query: 82   TVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI---GMRLCDVSDILHIDPNNHIGDLLK 138
              R+    D       +S    +        ++         +           I   L 
Sbjct: 355  --RYLTRPDGTDAFLYVSPRCRELFEVEPEAVLSQTIHPFSFIHPEDRPKVQARIARCLA 412

Query: 139  RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
            + +T   +         +      +A+L  +  N E       G++             K
Sbjct: 413  QNSTICEENFQIITPSGDQKYLQAVASL-FHQPNGEVI---WDGLMLDISKIQRAEIALK 468

Query: 199  RL---------DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKN----------- 238
             L            F  L         V                                
Sbjct: 469  TLVAGTATATGANFFRELARCTATALKVPYVLVTERIGNCLETLGFWAEGMLQPKLNYEI 528

Query: 239  ---------------KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY 283
                           +V  + E + +   +++ +    L         Q   +   L++ 
Sbjct: 529  SQTPCEVSLREGSLCQVRGVKEAFPNDPHLIEMQADGYLGVALKDAQGQAIGNLCILDRQ 588

Query: 284  TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG--NL 341
              +      Q     +                 + +      ++  P   FV        
Sbjct: 589  PLRHVELAEQILQVFAARAGVELERQQAELEVRQTQRFLDSIIENLPNMVFVKDAQFLRF 648

Query: 342  FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401
               N +   L  Y   D +           A +     +    +L   +   IA      
Sbjct: 649  VRFNKAGEELLGYVREDLLGKNDY--DFFPAQEADFFVSKDREVLATGNLLDIAEE---- 702

Query: 402  TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
             IQ     +  +        N   +     GI  +  + R  +  +     +L   LE +
Sbjct: 703  QIQTRTGETRLLHTKKIPILNDAGQPQYLLGISEDITEYRQAELALRESETRLRLALEVS 762

Query: 462  SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
                   + E  ++    A   +       +        +               ++   
Sbjct: 763  QAIAWERDLEADLVYFTGA---MTLPVPATLSFAELLGLIHPLDREAFQRAHQTAIANRG 819

Query: 522  RQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKI 577
               +E     +   +     ++    +  ++           DIS+ KQ + +L  AK+ 
Sbjct: 820  SFQIEHRIRVADAAQTWRWYQVQASVITDANNQPIRLIGMSFDISDRKQAEAELLQAKET 879

Query: 578  AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
            AE  +  K DFLA +SHEIRTP+ A+IG + ++ N    P       +Y   I  +G  +
Sbjct: 880  AEAATRAKGDFLATMSHEIRTPMNAVIGMTGLLLNTPLSP----EQRQYGETIRNAGESL 935

Query: 638  LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697
            L ++ND+LD S+IESG ++L   P  L   V+E I L+   A EK + +       +P +
Sbjct: 936  LSVINDILDFSRIESGHLDLEEHPFELPHCVAEVIDLLANRAVEKSLHLEVQIDPGVPAV 995

Query: 698  -LADLRSVKQIALNILSNAIHFTPSGGQ-III-STTHTSNEE---VILRVRDTGVGMTNY 751
             +AD   ++QI +N+++NA+ FT  G   I + S   + + +   +   V+DTG+G+   
Sbjct: 996  IVADSARLRQILVNLVANALKFTDQGEVMIRVKSVAVSPDGQQQTLEFSVQDTGIGIAPK 1055

Query: 752  ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
            +LE   +PF Q+ +S   R  G+GLGL ++K + +   G+  + S    G+      P+ 
Sbjct: 1056 QLEHLFQPFSQVDSSSTRRYGGSGLGLVISKRLCERMGGQIRVQSRAGVGSTFSFTLPVR 1115

Query: 812  DTSHP 816
             +  P
Sbjct: 1116 VSLTP 1120



 Score = 48.5 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 41/430 (9%), Positives = 100/430 (23%), Gaps = 45/430 (10%)

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244
               V    +     L      +  + + +        ++ +       +   + +S++ 
Sbjct: 40  RPTCVLVCQQERLVGLFTVQDAVRLMVQEYPWQTASIGEVMAPAIAVLKIDDNHDLSAIR 99

Query: 245 EY-YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKK-QYFGTLQNNSKESFEY 302
           +    H+   L                + +          T+  Q     Q       + 
Sbjct: 100 QLFQRHRLTHLAVVAAEDRPVGVLLECDLKALGKAEATFQTQAVQVQHQFQQELNRYQKA 159

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEI 362
            +           + GE+  P  V+       V               L  + +      
Sbjct: 160 ETTLRQIVQGTATETGEDFFPALVENLATVLGVRHVLVSELRGDQMYTLAFWSNHQQ--Q 217

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR--------------E 408
                +LL+        A     +    +     +A + ++  +                
Sbjct: 218 PNIAYSLLEGACCRRAVAEGTYCISSGVQQTYPGNAIMQSLNADSYLGVALTAPGGKVLG 277

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK-------------------RKMEI 449
               +   P          +            R                        +E 
Sbjct: 278 TLCIIDDKPLVDPVWAESLLRMFADRASAELRRQQADQSLEALKNELEKKVAERTAALED 337

Query: 450 EVMQLCSILEATSDGIA--IINREGI--ILSTNRAVSKLFGYPVEDILRKPFTV--FLEQ 503
              +L  + E     I   +   +G    L  +    +LF    E +L +      F+  
Sbjct: 338 SQARLDRLSENLPGMIFRYLTRPDGTDAFLYVSPRCRELFEVEPEAVLSQTIHPFSFIHP 397

Query: 504 NTPSVMNHYLTEILSLDLRQTLE-KITLGSTKEEKLLSLRIIIKKLPFSSCYS-LTMHDI 561
                +   +   L+ +     E    +  + ++K L     +   P         M DI
Sbjct: 398 EDRPKVQARIARCLAQNSTICEENFQIITPSGDQKYLQAVASLFHQPNGEVIWDGLMLDI 457

Query: 562 SEWKQEKNKL 571
           S+ ++ +  L
Sbjct: 458 SKIQRAEIAL 467


>gi|288942103|ref|YP_003444343.1| PAS/PAC sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
 gi|288897475|gb|ADC63311.1| PAS/PAC sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
          Length = 873

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 98/501 (19%), Positives = 199/501 (39%), Gaps = 25/501 (4%)

Query: 316 DEGENLTPETVDKCPIPFFVYSHGNLF--YANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
              E       +  P+   +    ++     N +      Y + +        + L  A 
Sbjct: 12  PSSEARLRTLFELAPLGIVIIDPESMLPLEFNRAAHEQLGYSAEE-------FARLRIAD 64

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
             ++ +        ++  T             +         +     +          I
Sbjct: 65  YEANEDPEDVQRHVQALLTQGYDDFETRHRCRDGSFRHVNVLVQVLPVDGRRM---FYAI 121

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
             +  ++R+ + ++     +  +  E    G+A+I  +G  L  N+A+ ++ GY   ++L
Sbjct: 122 YRDITESRLAEERLRRSEAKFRAAFEIAPHGMALIAPDGHWLQVNQALCRILGYDESELL 181

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553
            + F         +    YL +++S      ++       ++ + + + + +  +     
Sbjct: 182 VRDFQSISHPEDLAADLVYLEQLVS-GATDRIQFEKRYLHRQGQPIPVMLSVSAVRDEWG 240

Query: 554 ----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                   + D++E K  +  +  A + AE  +  KS+FLA +SHEIRTPL AIIG  ++
Sbjct: 241 RLSRMVAHVLDLTERKASEEAMRQAMETAEVANRAKSEFLANMSHEIRTPLNAIIGLGQL 300

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           + +       + R  +Y N I +  + +L I+ND+LD SKIE+G++ L      ++  + 
Sbjct: 301 LLDSGL----DSRQRDYMNKIRQGSDALLRILNDVLDYSKIEAGQIQLDTVDFRIEAVLD 356

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSG-GQIII 727
           +  +L  L A  K + +        P++   D   + Q+  N++ NA+ FT  G  ++ I
Sbjct: 357 QLTALFSLAAESKGLALYYHLDPRTPQVLRGDPMRLGQVLNNLVGNAVKFTERGFVELRI 416

Query: 728 STTHTSNEEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
                   ++     VRDTG+GM    +E   + F Q   S   R  GTGLGL +++ + 
Sbjct: 417 RALREDQGQIQLAFSVRDTGIGMDQASIEHLFQSFTQADCSITRRYGGTGLGLSISRQLA 476

Query: 786 DANMGKFYIFSTPAKGTLIEI 806
               G   + S    G++   
Sbjct: 477 QLMGGDIRVRSRLGIGSVFRF 497



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/358 (11%), Positives = 92/358 (25%), Gaps = 32/358 (8%)

Query: 89  IDAHGYL-KEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
           ID    L  E +    + +G  A +   +R+ D       +        L  Q     +T
Sbjct: 32  IDPESMLPLEFNRAAHEQLGYSAEEFARLRIADYEANEDPEDVQRHVQALLTQGYDDFET 91

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF-GIVHVNRVDNDPRALGKRLDKKFSH 206
                +G+  +V + +  LP+        G R F  I              +R + KF  
Sbjct: 92  RHRCRDGSFRHVNVLVQVLPV-------DGRRMFYAIYRDITESRLAEERLRRSEAKFRA 144

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLKTE--KYPL 261
             EI     ++                         +    +  +H +D+         L
Sbjct: 145 AFEIAPHGMALIAPDGHWLQVNQALCRILGYDESELLVRDFQSISHPEDLAADLVYLEQL 204

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
           ++     +  ++ +                +++        ++H    +     +E    
Sbjct: 205 VSGATDRIQFEKRYLHRQGQPIPVMLSVSAVRDEWGRLSRMVAHVLDLTERKASEEAMRQ 264

Query: 322 TPETVDKCPIPFFVYSHGNLFYANPS---FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
             ET +                AN +   FL    ++    +    GL  LL    L   
Sbjct: 265 AMETAE---------------VANRAKSEFLANMSHEIRTPLNAIIGLGQLLLDSGLDSR 309

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
                  + +     +     +          + +  + F       +      +  E
Sbjct: 310 QRDYMNKIRQGSDALLRILNDVLDYSKIEAGQIQLDTVDFRIEAVLDQLTALFSLAAE 367



 Score = 65.8 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/420 (9%), Positives = 98/420 (23%), Gaps = 57/420 (13%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY--GKTT 148
             G+  ++++ L + +G    +++      +S    +  +    + L    T     +  
Sbjct: 158 PDGHWLQVNQALCRILGYDESELLVRDFQSISHPEDLAADLVYLEQLVSGATDRIQFEKR 217

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +G    +P+ L+   +       S  R    V             ++  +     +
Sbjct: 218 YLHRQG--QPIPVMLSVSAVRDEWGRLS--RMVAHVLDLTERKASEEAMRQAMETAEVAN 273

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP-LLTSEES 267
             K    +    +          P   +      L +            K      +   
Sbjct: 274 RAKSEFLANMSHEIR-------TPLNAIIGLGQLLLDSGLDSRQRDYMNKIRQGSDALLR 326

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
            L +  D+  I   Q         ++    +     S        A +   +  TP+ + 
Sbjct: 327 ILNDVLDYSKIEAGQIQLDTVDFRIEAVLDQLTALFSLAAESKGLALYYHLDPRTPQVLR 386

Query: 328 KCPI------------PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGG-------LST 368
             P+                   G +     +         +       G       +  
Sbjct: 387 GDPMRLGQVLNNLVGNAVKFTERGFVELRIRALREDQGQIQLAFSVRDTGIGMDQASIEH 446

Query: 369 LLDAPKLSDNNAIKP-----------VMLYRSDRTCIAASARLHTIQ----WNRENSLAM 413
           L  +   +D +  +              L +     I   +RL                 
Sbjct: 447 LFQSFTQADCSITRRYGGTGLGLSISRQLAQLMGGDIRVRSRLGIGSVFRFKADFQIAES 506

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI---------EVMQLCSILEATSDG 464
                    +            + +  R  +  +E           + Q  +IL AT+ G
Sbjct: 507 QPRRIGSPPRVLGRRRVLIAADDCLARRAPRAILEAWGMEIAEARSLAQARAILSATAGG 566


>gi|294496151|ref|YP_003542644.1| multi-sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
 gi|292667150|gb|ADE36999.1| multi-sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
          Length = 732

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 105/378 (27%), Positives = 191/378 (50%), Gaps = 13/378 (3%)

Query: 443 NKRKMEIEVMQLCSILEATSDGIAII--NREGIILSTNRAVSKLFGYPVEDILRKPFTV- 499
              +    + ++ ++++ +   +          +   +     L GY  E+         
Sbjct: 358 ALEESNASIQEMKTVIDNSPAIVFKWKATPGWPVELVSDN-ISLLGYSPEEFSSGHLWYG 416

Query: 500 -FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS--- 555
             +  +    + + L + ++   +    +     TK  ++  +         +       
Sbjct: 417 DIVHPDDLDRVQNNLDKQMAEG-QNDFTQEYRIITKSGEIKWVDERTLIKRDAKGKIKYL 475

Query: 556 -LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
              + DI+E K+ +  +  AK +AE  +  KS FLA +SHE+RTPL +IIGFS+V+  + 
Sbjct: 476 QGIILDITEKKEAEKAIIEAKGMAEAANQTKSQFLANMSHELRTPLNSIIGFSDVLLEEA 535

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
           FG L N +  +Y + I+ SG+ +LDI+ND+LD+SKIE+GKM L+ E   L+E +SE  + 
Sbjct: 536 FGKL-NEKQKKYTHNINTSGHHLLDIINDILDLSKIEAGKMELNPENFGLEEIISELKNT 594

Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
           ++    +K++++    +   P + AD   +KQ+  N+LSNAI FTP  G+I I       
Sbjct: 595 LEPLVKKKQLILDLDTSLEYP-VYADKLKIKQVLYNLLSNAIKFTPEKGKIAIDIDC-GE 652

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
           EE+ + V D+G+G+   E +K  +PF QI +    + +GTGLGL L K +++ + G+ ++
Sbjct: 653 EEITISVSDSGIGIPPEEQDKLFQPFRQIDSDSNRQYQGTGLGLALVKNIIEMHGGQIWV 712

Query: 795 FSTPAKGTLIEIIFPLYD 812
            S   KG+  +   PL +
Sbjct: 713 ESEAGKGSTFKFTLPLQN 730


>gi|298241549|ref|ZP_06965356.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297554603|gb|EFH88467.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 978

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 106/739 (14%), Positives = 227/739 (30%), Gaps = 46/739 (6%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD-LLKRQNTW 143
             W     G +   ++ L   +     ++ G                      ++    +
Sbjct: 267 LVWIARPDGSITYNNQRLIDYLAMTLEQVEGAGWLAGVHSDDRHRVWEAWQTAIQTGVPY 326

Query: 144 YGKTTLWPIEGT-NLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
             +      +GT   Y    +  +P  +       +   G                   +
Sbjct: 327 --EVEQRLQDGTSGAYRWFLVRGVPQRNAQGTILHW--VGTCTDIDEQKRVEQQLNESRE 382

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL-----RMKNKVSSLTEYYAHKDDVLKTE 257
            +  L E              +                           +    + L   
Sbjct: 383 NWRVLAETVPQLVWTSLPDGFVTYFNQRSFEYTHAAFEQLQGYGWYQFVHPEDAERLVAL 442

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
           +     + E+        +               +++   +  +++            ++
Sbjct: 443 RRHAFATGETYEVANRVRNGQTGAYRWFLTRAMPVRDGIGQIVKWVGTCTDIEDQKQAEQ 502

Query: 318 GENLTPE----TVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
               + E      +  P   + +   G L Y N              +            
Sbjct: 503 KLKESRENFRVLAETLPHLVWTMQPDGRLDYVNQRACDYIGASPEYMLGDEWWQ---FVH 559

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
           P   +       +   S  T                             +   + +   G
Sbjct: 560 PDDYERI---QALRRHSRETGEPYEIEYRLKDGQTGAYRWFLGRTLPVRDDTGQIIKWLG 616

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
              +    +  +  +     ++  ++ +T  GI II +E  I+  N    ++ GY  ED+
Sbjct: 617 TSTDIEGQKRIEESLRQSQERVSVLMNSTMIGINIIEKE-QIVDANDTFLRMTGYTCEDL 675

Query: 493 L-RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
              +   + +           + + L+     T EK  +   K+   L + +    L   
Sbjct: 676 RAGRMNWMRMTPPEYLARTRQVHQELATQQSVTYEKEYIC--KDGSRLPVVVCGVVLKHH 733

Query: 552 SCY-SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
                  + D S  K              +    K  F++  SHE+R PLTA+   +  +
Sbjct: 734 PRQAIAFVLDNSARK--------------ELDQRKDAFISMASHELRNPLTALKLQT-SL 778

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
            +++    G P      + ++   N V  +V + LD+SK ++G++    E V+LDE + E
Sbjct: 779 LHRQLARQGIPASAPALSSMETQINTVTRLVEEWLDVSKFQAGRLEYVRERVNLDELLRE 838

Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
            +  +Q      RIL+R +   ++   +AD   + Q+  N+LSNAI ++P    + +  +
Sbjct: 839 IVDTMQQTHPSHRILLRGAVQTSL---MADRDRLGQVFTNLLSNAIKYSPGAETVEMDLS 895

Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
            +    V +RV D G+G+   + +K  + F +    +Q    G G+GL +   +V  + G
Sbjct: 896 TSEE-TVTVRVCDHGLGIPREQRDKIFERFYRASGPRQKAIPGLGMGLYIVAEIVKRHRG 954

Query: 791 KFYIFSTPAKGTLIEIIFP 809
              + ST  KG+   +  P
Sbjct: 955 TITVDSTVGKGSTFTVTLP 973



 Score =  125 bits (313), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 48/526 (9%), Positives = 126/526 (23%), Gaps = 37/526 (7%)

Query: 69  DSENTFVFDPIPRTVRFT---------WNIDAHGYLKEISEELPKTIGNYAFKMIGMR-L 118
           +++ T    P  R    T         + +D  G +   +       G     + G    
Sbjct: 3   NAKQTKRLTPGSRETLLTILETLPDAFFVVDDAGTIVYANASAQAMSGATPEDVCGKSLW 62

Query: 119 CDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGF 178
           C  S ++       I    + Q          P+        + +   P         G 
Sbjct: 63  CGASHLVSTALYQVIQKAKQTQEP-TEVEYASPVT----RHWLHVQLAP------TVGGL 111

Query: 179 RGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKN 238
                 H  R     +    R ++      +       +   +  +    + P       
Sbjct: 112 M--LQFHEMRAPAPRQETFPRGERLCIGDLDGLPTWIGILTPEGIVLDINAVPLDDAQVR 169

Query: 239 KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE 298
           +   + +  A                   +     +     +    +     + +     
Sbjct: 170 REEVIGKPLAEAPWWSFAPASQEWLRAAIARASTGETVHFEVLLRPRGGIVLSFEGTITP 229

Query: 299 SFEYLSHRNHPSLS----AYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTK 353
             +   H  +  ++        + +      +D  P   ++    G++ Y N   +    
Sbjct: 230 HMDADHHVEYLVIAGIDITARKQADEAIHTLIDAIPQLVWIARPDGSITYNNQRLIDYLA 289

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
                 +E   G   L        +   +                RL             
Sbjct: 290 MT----LEQVEGAGWLAGVHSDDRHRVWEAWQTAIQTGVPYEVEQRLQDGTS--GAYRWF 343

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
                 + N     +   G   +  + +  ++++         + E     +     +G 
Sbjct: 344 LVRGVPQRNAQGTILHWVGTCTDIDEQKRVEQQLNESRENWRVLAETVPQLVWTSLPDGF 403

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR-QTLEKITLGS 532
           +   N+   +      E +    +  F+       +        +     +   ++  G 
Sbjct: 404 VTYFNQRSFEYTHAAFEQLQGYGWYQFVHPEDAERLVALRRHAFATGETYEVANRVRNGQ 463

Query: 533 TKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKNKLSHAKK 576
           T   +    R +  +        +  T  DI + KQ + KL  +++
Sbjct: 464 TGAYRWFLTRAMPVRDGIGQIVKWVGTCTDIEDQKQAEQKLKESRE 509



 Score = 87.4 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 35/404 (8%), Positives = 97/404 (24%), Gaps = 18/404 (4%)

Query: 191 NDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK 250
              + L     +    + E       V  +   I    +    +          +     
Sbjct: 5   KQTKRLTPGSRETLLTILETLPDAFFVVDDAGTIVYANASAQAMSGATPEDVCGKSLWCG 64

Query: 251 DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310
              L +    L    + +   QE       +  T+      L                P+
Sbjct: 65  ASHLVST--ALYQVIQKAKQTQEPTEVEYASPVTRHWLHVQLAPTVGGLMLQFHEMRAPA 122

Query: 311 LSAY-FDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
                F  GE L    +D  P    + +   +     +  L       +++         
Sbjct: 123 PRQETFPRGERLCIGDLDGLPTWIGILTPEGIVLDINAVPLDDAQVRREEVIGKPLAEAP 182

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
             +   +    ++  +   S    +     L          L+         +       
Sbjct: 183 WWSFAPASQEWLRAAIARASTGETVHFEVLLRP---RGGIVLSFEGTITPHMDADHHVEY 239

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
                 +    +     +        ++++A    + I   +G I   N+ +       +
Sbjct: 240 LVIAGIDITARKQADEAI-------HTLIDAIPQLVWIARPDGSITYNNQRLIDYLAMTL 292

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
           E +    +   +  +    +       +   +   +E+     T         +      
Sbjct: 293 EQVEGAGWLAGVHSDDRHRVWEAWQTAIQTGVPYEVEQRLQDGT-SGAYRWFLVRGVPQR 351

Query: 550 FSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
            +      +  T  DI E K+ + +L+ +++     +      +
Sbjct: 352 NAQGTILHWVGTCTDIDEQKRVEQQLNESRENWRVLAETVPQLV 395


>gi|268325194|emb|CBH38782.1| putative sensory transduction histidine kinase [uncultured archaeon]
          Length = 1036

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 100/610 (16%), Positives = 204/610 (33%), Gaps = 28/610 (4%)

Query: 207  LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
            + +         K  +++             +K+    +        LK        S  
Sbjct: 444  VLDPDGDIIKANKAAFNLLGYSEAEVIGMSFDKIVGKPKQEEEGKIELKKLIREPEASIT 503

Query: 267  SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF-EYLSHRNHPSLSAYFDEGENLTPET 325
            +            +                +                    E E      
Sbjct: 504  NLETTYLTKDRREIPVNFAASIMKNENGELQGIVCNACDITERKQAEEALRESEERFRAI 563

Query: 326  VDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
             +      F+          NP+   L    +   I        L D            +
Sbjct: 564  SETAQDSIFIKDRALKYTLVNPTMERLFGLPASKIIGKTD--DDLFD--------KEAAL 613

Query: 385  MLYRSDRTCIAASARLHTIQWN-RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
             +   D   +             +    +   I     +   E +   GI  +  + +  
Sbjct: 614  HIREVDSHVLKGETVEEEHTKKIKGVLFSFHVIKVPMRDNSGEVIGLCGIARDITERKRA 673

Query: 444  KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            +  +     +  SI E+  D  A +  +G IL    ++    GY  E++L +    F   
Sbjct: 674  EEALRESEERYRSIFESIQDVYAEVAMDGTILEITPSIQSFSGYAPEEVLGRSLAEFYVY 733

Query: 504  NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMH 559
                     L  +         +   +   K  + ++    +K +  +S        TM 
Sbjct: 734  PEQRA--ALLERLRLGG--SVNDYEVVLRHKTGRAVTSSFTVKVVTDASGTPVKIVGTMR 789

Query: 560  DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
            D++E K+  ++     K   +    K++FL    HE+R+PL  I+G++ +++        
Sbjct: 790  DVTERKRLDDERERLIKKLGELDKMKTNFLNVAYHEMRSPLAPIVGYASLLEQGEL---- 845

Query: 620  NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
            N +  +Y   I+ S + + +++  +L+++++E+GK  L  E +S+ E V+  +      A
Sbjct: 846  NEKQKKYVRIIEESASQLEELIESMLEVTRLEAGKAELSLEKMSIPEIVNNVLERFGPQA 905

Query: 680  NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
            + K+  I          +  D + +  I  N++SNAI +T   G+I I         + +
Sbjct: 906  DAKKQTISAVVPEGT-EVEGDKQKITAIFDNLISNAIKYTGEKGRIDIVVEDRKEG-IRV 963

Query: 740  RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
             V DTG+G+   +L +A + F     S + +  G GLGL + K  V  + G+ ++ S   
Sbjct: 964  CVADTGIGIPKEQLPRAFERFFMADTSLRRK-GGLGLGLAIVKGYVKLHGGEVWVTSELG 1022

Query: 800  KGTLIEIIFP 809
            KG+      P
Sbjct: 1023 KGSKFWFTLP 1032



 Score =  122 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 53/330 (16%), Positives = 101/330 (30%), Gaps = 21/330 (6%)

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIA 363
                  S      +     T++       V    G++  AN +   L  Y   + I   
Sbjct: 414 MAQRIKNSFTETVIKKELENTLNTMTDTLIVLDPDGDIIKANKAAFNLLGYSEAEVIG-- 471

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
                ++  PK  +   I+   L R      + +    T        + + F      N+
Sbjct: 472 MSFDKIVGKPKQEEEGKIELKKLIR--EPEASITNLETTYLTKDRREIPVNFAASIMKNE 529

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
             E         +  + +  +  +     +  +I E   D I I +R       N  + +
Sbjct: 530 NGELQGIVCNACDITERKQAEEALRESEERFRAISETAQDSIFIKDRALKYTLVNPTMER 589

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           LFG P   I+ K      ++     +    + +L  +  +           +  L S  +
Sbjct: 590 LFGLPASKIIGKTDDDLFDKEAALHIREVDSHVLKGETVE----EEHTKKIKGVLFSFHV 645

Query: 544 IIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH----- 594
           I   +  +S           DI+E K+ +  L  +++          D  A V+      
Sbjct: 646 IKVPMRDNSGEVIGLCGIARDITERKRAEEALRESEERYRSIFESIQDVYAEVAMDGTIL 705

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           EI TP  +I  FS     +  G      Y+
Sbjct: 706 EI-TP--SIQSFSGYAPEEVLGRSLAEFYV 732



 Score = 97.0 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/377 (10%), Positives = 102/377 (27%), Gaps = 28/377 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG--- 145
           +D  G + + ++     +G    ++IGM    +      +    I      +        
Sbjct: 445 LDPDGDIIKANKAAFNLLGYSEAEVIGMSFDKIVGKPKQEEEGKIELKKLIREPEASITN 504

Query: 146 -KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            +TT    +     +P++ AA  + + N E  G                    +  +++F
Sbjct: 505 LETTYLTKDRR--EIPVNFAASIMKNENGELQGI--VCNACDITERKQAEEALRESEERF 560

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHL--RMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
             + E  +    ++               L     +K+   T+      +     +    
Sbjct: 561 RAISETAQDSIFIKDRALKYTLVNPTMERLFGLPASKIIGKTDDDLFDKEAALHIREVDS 620

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
              +    E+E    I    ++       +++NS E           +     +E    +
Sbjct: 621 HVLKGETVEEEHTKKIKGVLFSFHVIKVPMRDNSGEVIGLCGIARDITERKRAEEALRES 680

Query: 323 PE----TVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
            E      +     +  V   G +    PS    + Y   + +         L    +  
Sbjct: 681 EERYRSIFESIQDVYAEVAMDGTILEITPSIQSFSGYAPEEVLG------RSLAEFYVYP 734

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
                 +   R   +       L   +     ++  +F      +     +   G   + 
Sbjct: 735 EQRAALLERLRLGGSVNDYEVVL---RHKTGRAVTSSFTVKVVTDASGTPVKIVGTMRDV 791

Query: 438 VDTRINKRKMEIEVMQL 454
            + +     ++ E  +L
Sbjct: 792 TERKR----LDDERERL 804


>gi|149174913|ref|ZP_01853537.1| ammonium/methylammonium permease [Planctomyces maris DSM 8797]
 gi|148846250|gb|EDL60589.1| ammonium/methylammonium permease [Planctomyces maris DSM 8797]
          Length = 989

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 113/369 (30%), Positives = 191/369 (51%), Gaps = 14/369 (3%)

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
           +   ++  SI++   D I  I+ EG I   NR    LFGY   + + K   + +      
Sbjct: 455 KDREVRYRSIMDNVMDAIITIDLEGKIEEFNRGAEYLFGYYNHEAIGKSIDLLIPPLHQK 514

Query: 508 VMNHYLTEILSLDLRQTL--EKITLGSTKEEKLLS--LRIIIKKLPFSSCYSLTMHDISE 563
           + + Y +  L+  L + +   +  +    +       L +    L     ++  + DISE
Sbjct: 515 IQHKYSSGELNPQLVRAIGSRQEIVAQRNDGSTFPAELAVSSVLLADREIFTGIIQDISE 574

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            K  +  L+ A+K AE  S  KS+FLA +SHEIRTP+TAI+GF++++ N     L     
Sbjct: 575 RKDYERSLNEARKRAEAASEAKSEFLANMSHEIRTPMTAILGFTDILLNN----LRKKED 630

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
           IE AN + R+G  ++ ++ND+LD+SKIE+ K+ L    V+  E + + ++L+Q+ A+ K 
Sbjct: 631 IESANIVKRNGEYLIGVINDILDLSKIEARKLELEQVRVNTIELIRDIVALMQIKADLKE 690

Query: 684 ILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTT---HTSN-EEVI 738
           + +  SF N IP  I+ D   ++QI +N+L NAI FT SG  + + T          ++ 
Sbjct: 691 LELVVSFDNPIPETIVTDPTRLRQILINLLGNAIKFTDSG-YVELRTRTIHLEDGFAQLQ 749

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
             V DTG+G++   L +  +PF Q  +S   +  GTGLGL ++K + +   G+ ++ ST 
Sbjct: 750 FDVIDTGIGISETALAQIYQPFTQADSSTTRKYGGTGLGLAISKRLSEMLGGRIHVTSTI 809

Query: 799 AKGTLIEII 807
             G+   I 
Sbjct: 810 GSGSTFTIS 818



 Score = 48.1 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 63/207 (30%), Gaps = 21/207 (10%)

Query: 34  FETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRF-------- 85
            ET  S ++       +  NFT+           LD++   + D   R VR+        
Sbjct: 410 LETMISHEKGNKQSRADVDNFTEAGIVGYQYNRVLDAQEILLSDVKDREVRYRSIMDNVM 469

Query: 86  --TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID-----PNNHIGDLLK 138
                ID  G ++E +       G Y  + IG  +  +   LH        +  +   L 
Sbjct: 470 DAIITIDLEGKIEEFNRGAEYLFGYYNHEAIGKSIDLLIPPLHQKIQHKYSSGELNPQLV 529

Query: 139 RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
           R      +      +G+     + ++++ +  R   F+G     I+       D      
Sbjct: 530 RAIGSRQEIVAQRNDGSTFPAELAVSSVLLADRE-IFTG-----IIQDISERKDYERSLN 583

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIF 225
              K+     E K    +    +    
Sbjct: 584 EARKRAEAASEAKSEFLANMSHEIRTP 610


>gi|117925404|ref|YP_866021.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117609160|gb|ABK44615.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 674

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 103/478 (21%), Positives = 203/478 (42%), Gaps = 33/478 (6%)

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI-- 416
            + I   +  +L   ++   +  +   L +   +         T  +  E+     +   
Sbjct: 44  ALTIEQQVDLILLDIQMPGMDGFETAHLLKMSASTRDIPIIFITAIYRSEHFYKQGYQVG 103

Query: 417 -------PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI------------ 457
                  P ++       +    +   +   +    +++ +   L +             
Sbjct: 104 AVDYLTKPVDENLLLNRILSYMRLLQREKSLQRTMAELQRKEHALQTAHDEIAETLRERT 163

Query: 458 --LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
             L+  SD I   +++G ++  N    ++FGYP + IL  P    +          + +E
Sbjct: 164 VALDRASDAIISADQQGHVIFWNHGAERIFGYPKQTILHTPLLRLIPDQLHETFLSHFSE 223

Query: 516 ILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKNKL 571
           +++    +  +      G     ++  + + +     +    +S  + DIS+ KQ + +L
Sbjct: 224 VIASGEIKNSDSIYEFSGLRANGEVFPIEVSVSYWQGAERHFFSAVVRDISQRKQLETQL 283

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
            HA++I+E  +  KS FLA +SHEIRTPL  I+G  ++++                N + 
Sbjct: 284 RHAQQISESANRAKSTFLATMSHEIRTPLNTILGMGQLLEETDL----TEMQHWCVNILG 339

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
            SG  +L ++ND+LD+SKIE G ++L   P  L + + E   L    A  K I +R  F+
Sbjct: 340 NSGRALLTLINDILDLSKIEEGHLSLEHTPFDLHQLLQEVEELFTFSALAKGITLRGHFS 399

Query: 692 NNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
            ++P  ++ D   ++Q+ LN+L NAI FT  G  + +S    + +E+   V D+G G+  
Sbjct: 400 ESLPQWVMGDPTRLRQVLLNLLGNAIKFTKQGF-VELSAQTMAEDEICFSVFDSGPGIAK 458

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
              ++   PF Q  +S   +  G+GLGL +++ +V    G+  + S   KG+      
Sbjct: 459 ERQQEIFLPFTQADSSTTRKYGGSGLGLTISRRLVKLMHGQIQLESRLGKGSRFYFSL 516


>gi|229013791|ref|ZP_04170919.1| hypothetical protein bmyco0001_42000 [Bacillus mycoides DSM 2048]
 gi|229062272|ref|ZP_04199593.1| hypothetical protein bcere0026_43420 [Bacillus cereus AH603]
 gi|228717000|gb|EEL68681.1| hypothetical protein bcere0026_43420 [Bacillus cereus AH603]
 gi|228747460|gb|EEL97335.1| hypothetical protein bmyco0001_42000 [Bacillus mycoides DSM 2048]
          Length = 545

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 93/388 (23%), Positives = 181/388 (46%), Gaps = 26/388 (6%)

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           +           +   + +  +E E    +L +++E    G+ +I+  G I   NR+  +
Sbjct: 174 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 233

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542
            F    E+ L + +           +   + EI   +++   + +  LG  ++   +   
Sbjct: 234 TFHVTDEEYLDRLYYESFHHT---EIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 290

Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
            II          L  HDI+E K+ +                + DFLA VSHE++TP+T+
Sbjct: 291 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 336

Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           I GFSE + +   G + N ++ E + + I +    +  ++ DLLD+SKIE     L+   
Sbjct: 337 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGT 393

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           V + E + +   ++   A EK I ++ +    +  ++ D   +KQI +N+++NAI +TP+
Sbjct: 394 VDMKELLEDIHMVLDNKAGEKEISLQVNALKRV-SVIGDPGRLKQIFINLINNAIVYTPA 452

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           GG + +           ++V DTG+G++  E+ +  + F ++  ++     GTGLGL + 
Sbjct: 453 GGVVSVELA-EDKYNAYIKVSDTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIV 511

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           K +V+A+ G   + S   +GT   ++ P
Sbjct: 512 KHLVEAHQGTITVDSEVGEGTTFTVVLP 539


>gi|229135423|ref|ZP_04264210.1| hypothetical protein bcere0014_43180 [Bacillus cereus BDRD-ST196]
 gi|228647984|gb|EEL04032.1| hypothetical protein bcere0014_43180 [Bacillus cereus BDRD-ST196]
          Length = 545

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 93/388 (23%), Positives = 181/388 (46%), Gaps = 26/388 (6%)

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           +           +   + +  +E E    +L +++E    G+ +I+  G I   NR+  +
Sbjct: 174 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 233

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542
            F    E+ L + +           +   + EI   +++   + +  LG  ++   +   
Sbjct: 234 TFHVTDEEYLDRLYYESFHHT---EIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 290

Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
            II          L  HDI+E K+ +                + DFLA VSHE++TP+T+
Sbjct: 291 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 336

Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           I GFSE + +   G + N ++ E + + I +    +  ++ DLLD+SKIE     L+   
Sbjct: 337 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGT 393

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           V + E + +   ++   A EK I ++ +    +  ++ D   +KQI +N+++NAI +TP+
Sbjct: 394 VDMKELLEDIHMVLDNKAGEKEISLQVNALKRV-SVIGDPGRLKQIFINLINNAIVYTPA 452

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           GG + +           ++V DTG+G++  E+ +  + F ++  ++     GTGLGL + 
Sbjct: 453 GGVVSVELA-EDKYNAYIKVSDTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIV 511

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           K +V+A+ G   + S   +GT   ++ P
Sbjct: 512 KHLVEAHQGTITVDSEVGEGTTFTVVLP 539


>gi|229169314|ref|ZP_04297024.1| hypothetical protein bcere0007_42640 [Bacillus cereus AH621]
 gi|228614077|gb|EEK71192.1| hypothetical protein bcere0007_42640 [Bacillus cereus AH621]
          Length = 545

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 93/388 (23%), Positives = 181/388 (46%), Gaps = 26/388 (6%)

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           +           +   + +  +E E    +L +++E    G+ +I+  G I   NR+  +
Sbjct: 174 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 233

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542
            F    E+ L + +           +   + EI   +++   + +  LG  ++   +   
Sbjct: 234 TFHVTDEEYLDRLYYESFHHT---EIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 290

Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
            II          L  HDI+E K+ +                + DFLA VSHE++TP+T+
Sbjct: 291 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 336

Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           I GFSE + +   G + N ++ E + + I +    +  ++ DLLD+SKIE     L+   
Sbjct: 337 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGT 393

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           V + E + +   ++   A EK I ++ +    +  ++ D   +KQI +N+++NAI +TP+
Sbjct: 394 VDMKELLEDIHMVLDNKAGEKEISLQVNALKRV-SVIGDPGRLKQIFINLINNAIVYTPA 452

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           GG + +           ++V DTG+G++  E+ +  + F ++  ++     GTGLGL + 
Sbjct: 453 GGVVSVELA-EDKYNAYIKVSDTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIV 511

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           K +V+A+ G   + S   +GT   ++ P
Sbjct: 512 KHLVEAHQGTITVDSEVGEGTTFTVVLP 539


>gi|83312715|ref|YP_422979.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82947556|dbj|BAE52420.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 870

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 124/657 (18%), Positives = 231/657 (35%), Gaps = 33/657 (5%)

Query: 170 SRNREFSGFRGFG-IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKE----KYDI 224
            R        G G  V          A   +          +K   S   KE     + +
Sbjct: 232 DRQGTVIAATGRGQTVEAPDGALTAAARAFQSTSPAPGKAAVKAYPSPTGKEEMIAAFVL 291

Query: 225 FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYT 284
            +        R ++           +  V+      L++S   ++         +  +  
Sbjct: 292 LNNGWTVSLARPRSSFVDEIAPEVTRISVIVGGLLLLVSSLGFAIAHHVAGRW-DAARKA 350

Query: 285 KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFY 343
                  L+    E    L        +             +D       VY     L  
Sbjct: 351 LAAAHDELETRVHERTAALDTSRRELSTKS-----RTLETILDNIAQGISVYDDDLRLVA 405

Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP-VMLYRSDRTCIAASARLHT 402
            N  F  L +               L    +  +     P   +                
Sbjct: 406 CNHRFGELLRLPPDMTRPGTALEDYLRFNARRGEYGPGDPEAHVAERMDLARNFQPHRFQ 465

Query: 403 IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
            Q     +L +   P                  +  + R  +  +      L   +E + 
Sbjct: 466 RQRADGTALEVIGNPLPGG-------GFVATHTDITEARRAEEALRT----LSRAVEQSP 514

Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522
             + I +  G I   N    ++ GY +E++      +     T   +   L   ++    
Sbjct: 515 VSVIITDPRGNIDYVNPKFMEVCGYTLEEVRGLNPRLLKSGLTQDAVYADLWRTITAG-- 572

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIA 578
            T E       K  +L   R  I  +         Y     DI+  K  ++ L  A + A
Sbjct: 573 GTWEGELQNRRKNGELYWERASISPIRSPDGAILHYLAVKEDITARKAAEDALVAAMQAA 632

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
           E  +  K+ FL+ +SHE+RTPLTA++G++E++++   GPL + ++ ++   I  SG  +L
Sbjct: 633 EDANRAKTVFLSHMSHELRTPLTAVLGYTEMLESGMAGPLPS-QHADFVAAISDSGRHLL 691

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
            I++++LDIS+IE G   +   P  L     E + +++     K I +       +P + 
Sbjct: 692 SIIDEVLDISRIELGSYRIATGPTDLRSIAQECVGMLRPQCVAKDIQLDLEEGGAMPLV- 750

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
            D R+V+Q+ +N+L NA+ +T +GG+I +  T  + + + + V DTG G+   +L    +
Sbjct: 751 TDSRAVRQVLINLLGNAVKYTEAGGRISVGLT-RAGQTLRVVVADTGCGIATDKLAHVFE 809

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
           PF ++   +     G GLGL + + +V+   G   I S P +GT + +  PL    +
Sbjct: 810 PFQRVDPLRADPARGVGLGLAICRRIVELLHGDIAIQSEPGRGTAVTLTLPLSAADN 866



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/227 (8%), Positives = 50/227 (22%), Gaps = 5/227 (2%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147
            D  G +  ++ +  +  G    ++ G+    +   L  D     +   +    TW G+ 
Sbjct: 520 TDPRGNIDYVNPKFMEVCGYTLEEVRGLNPRLLKSGLTQDAVYADLWRTITAGGTWEGEL 579

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                 G         +  PI S +     +    +                  +     
Sbjct: 580 QNRRKNGELY--WERASISPIRSPDGAILHY--LAVKEDITARKAAEDALVAAMQAAEDA 635

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
           +  K    S    +              +++ ++              ++    L S   
Sbjct: 636 NRAKTVFLSHMSHELRTPLTAVLGYTEMLESGMAGPLPSQHADFVAAISDSGRHLLSIID 695

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
            + +       +    T      ++                  L   
Sbjct: 696 EVLDISRIELGSYRIATGPTDLRSIAQECVGMLRPQCVAKDIQLDLE 742



 Score = 45.4 bits (106), Expect = 0.037,   Method: Composition-based stats.
 Identities = 34/377 (9%), Positives = 91/377 (24%), Gaps = 33/377 (8%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI--------DPNNHIGDLLK-RQ 140
           D    L   +    + +             +     +         DP  H+ + +   +
Sbjct: 398 DDDLRLVACNHRFGELLRLPPDMTRPGTALEDYLRFNARRGEYGPGDPEAHVAERMDLAR 457

Query: 141 NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
           N    +      +GT L    ++   P+        G                    + L
Sbjct: 458 NFQPHRFQRQRADGTAL----EVIGNPL-------PGGGFVATHTDITEARRAEEALRTL 506

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
            +             +  +   D  + +          +V  L                 
Sbjct: 507 SRAVEQSPVSV--IITDPRGNIDYVNPKFMEVCGYTLEEVRGLNPRLLKSGLTQDAVYAD 564

Query: 261 LLTSEESSLPEQEDF--HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
           L  +  +    + +      N   Y ++     +++       YL+ +   +     ++ 
Sbjct: 565 LWRTITAGGTWEGELQNRRKNGELYWERASISPIRSPDGAILHYLAVKEDITARKAAEDA 624

Query: 319 ENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
                +  +       V+              +  Y  + +  +AG L +      ++  
Sbjct: 625 LVAAMQAAEDANRAKTVFLSHMSHELRTPLTAVLGYTEMLESGMAGPLPSQHAD-FVAAI 683

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNREN--------SLAMTFIPFEKANQFPENMPQ 430
           +     +L   D     +   L + +                    P   A     ++ +
Sbjct: 684 SDSGRHLLSIIDEVLDISRIELGSYRIATGPTDLRSIAQECVGMLRPQCVAKDIQLDLEE 743

Query: 431 NGIEPEDVDTRINKRKM 447
            G  P   D+R  ++ +
Sbjct: 744 GGAMPLVTDSRAVRQVL 760


>gi|156741101|ref|YP_001431230.1| multi-sensor signal transduction histidine kinase [Roseiflexus
            castenholzii DSM 13941]
 gi|156232429|gb|ABU57212.1| multi-sensor signal transduction histidine kinase [Roseiflexus
            castenholzii DSM 13941]
          Length = 1042

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 122/695 (17%), Positives = 257/695 (36%), Gaps = 58/695 (8%)

Query: 152  IEGTNLYVPIDLAALPIYSR--NREFSGFRGFGI-VHVNRVDNDPRALGKRLDKKFSHLH 208
            + GT        +A+P  +   + ++   R     +   +      A  +  +++F+ L 
Sbjct: 354  VRGTTAGTLCFASAMPRTTPFTDGDYDLIRLMAQWIGSEQDRLQTEAALRESEERFALLA 413

Query: 209  EIKKGHSSVEKEKYDIFSQQSPPPH-LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
             +      + ++   + +  +          ++  +  +     +  +     L T  + 
Sbjct: 414  SVTTEGVIISEQGMIVDANAAAGTLFGVPPERLRGMPVFEFTTPEGREKVARALTTGYDR 473

Query: 268  SLPEQEDFHTINLNQYTKKQYFGTLQ--NNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
              P +     I+   +  +     +     +                A     E    + 
Sbjct: 474  --PYEVLARRIDGTLFPAEVTGRNIPYHGRTARVTTIRDISRQRLAEAALRASEERFRQL 531

Query: 326  VDKCPIPFFVY--SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
             +     F++   S   + Y NP++  +              L   +         A+  
Sbjct: 532  AENVNQVFWMSTPSLDQILYVNPAYERIWGRSCDSLYAQPSSLFEAIVPEDRERALALHR 591

Query: 384  VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
                R        S     +  + +    +T   F   N+         I  +  + +  
Sbjct: 592  AEYARG------YSIEFQILHTDGQQRWILT-RAFPVINEAGAVYRIAAISEDVTERKQA 644

Query: 444  KRKMEIE--------------VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
            + ++                   +L +IL+A+S+ IA++  +G  L+ NR    +FG P 
Sbjct: 645  EAELRAAMTALEVQYQTADRAQSELRAILDASSEVIALLAPDGAFLTVNRRFCDIFGVPA 704

Query: 490  EDILRKPFTVFLEQ--NTPSVMNHYLTEILS--LDLRQTLEKITLGSTKEEKLLSLRIII 545
            + +L +       +        +     +LS   D +    +  +    + + L++    
Sbjct: 705  DQVLGRRLIDMRAEIRWFFGDADEVYERMLSALQDAQDVFREQVVQLRPQHRELAIFSAP 764

Query: 546  KKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
                            D++  +  +                KS+F+A VSHE+RTPLT+I
Sbjct: 765  VWTANQVHLGRLYVFRDVTHERAVE--------------RMKSEFVAMVSHELRTPLTSI 810

Query: 604  IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
             G+ +++ +   GPL      E    +  + + +L ++NDLLD+S+IE+GK+ LH  P+ 
Sbjct: 811  KGYIDMLLDGDAGPLAVEHQ-ELLQIVKSNADRLLLLINDLLDMSRIEAGKLMLHRAPLD 869

Query: 664  LDEAVSEAISLVQLYANEKRILIRTSFANNIPR-----ILADLRSVKQIALNILSNAIHF 718
            +   + +  + ++   + K   +    +   P      +  D   V QI  N+LSNAI +
Sbjct: 870  VRPLIRQVATALRPQLDAKHQRLNLDLSETPPDDAPPLMFGDAARVHQILTNVLSNAIKY 929

Query: 719  TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
            TP GG+I +  +      + + V+DTG+G+T  E E+    F ++ N       GTGLGL
Sbjct: 930  TPQGGEISVRLSVEPP-WMCIAVQDTGIGLTPEEQERIFDRFYRVRNRATREASGTGLGL 988

Query: 779  PLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
             + +++VD + G+  + S   +G+   I FPL  +
Sbjct: 989  AITRSLVDLHQGRITVESEAGRGSTFRICFPLLTS 1023



 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 35/414 (8%), Positives = 92/414 (22%), Gaps = 38/414 (9%)

Query: 56  DQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIG 115
            +     +     +SE  F       T      I   G + + +       G    ++ G
Sbjct: 391 SEQDRLQTEAALRESEERFALLASVTTEGVI--ISEQGMIVDANAAAGTLFGVPPERLRG 448

Query: 116 MRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREF 175
           M + + +     +    +   L        +     I+GT     +    +P + R    
Sbjct: 449 MPVFEFTTPEGREK---VARALTTGYDRPYEVLARRIDGTLFPAEVTGRNIPYHGRTARV 505

Query: 176 SGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR 235
           +       +          A  +  +++F  L E       +     D     +P     
Sbjct: 506 T------TIRDISRQRLAEAALRASEERFRQLAENVNQVFWMSTPSLDQILYVNPAYERI 559

Query: 236 MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS-----LPEQEDFHTINLNQYTKKQYFG 290
                 SL    +   + +  E      +   +        +      +  Q        
Sbjct: 560 WGRSCDSLYAQPSSLFEAIVPEDRERALALHRAEYARGYSIEFQILHTDGQQRWILTRAF 619

Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENL------------------TPETVDKCPIP 332
            + N +   +   +     +     +                           +D     
Sbjct: 620 PVINEAGAVYRIAAISEDVTERKQAEAELRAAMTALEVQYQTADRAQSELRAILDASSEV 679

Query: 333 F-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR 391
              +   G     N  F  +    +   +                D + +   ML     
Sbjct: 680 IALLAPDGAFLTVNRRFCDIFGVPADQVLGRRLIDMRAEIRWFFGDADEVYERMLSALQD 739

Query: 392 TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
                  ++  ++        +             ++ +  +  +    R  +R
Sbjct: 740 AQDVFREQVVQLRPQHRE---LAIFSAPVWTANQVHLGRLYVFRDVTHERAVER 790



 Score = 41.9 bits (97), Expect = 0.42,   Method: Composition-based stats.
 Identities = 24/228 (10%), Positives = 64/228 (28%), Gaps = 8/228 (3%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI---LHIDPNNHIGDLLKRQNTWYGKT 147
             G    ++       G  A +++G RL D+         D +     +L          
Sbjct: 685 PDGAFLTVNRRFCDIFGVPADQVLGRRLIDMRAEIRWFFGDADEVYERMLSALQDAQDVF 744

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
               ++    +  + + + P+++ N+        G ++V R     RA+ +   +  + +
Sbjct: 745 REQVVQLRPQHRELAIFSAPVWTANQ-----VHLGRLYVFRDVTHERAVERMKSEFVAMV 799

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
               +   +  K   D+       P      ++  + +  A +  +L  +   +   E  
Sbjct: 800 SHELRTPLTSIKGYIDMLLDGDAGPLAVEHQELLQIVKSNADRLLLLINDLLDMSRIEAG 859

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
            L        +               +   +          P  +   
Sbjct: 860 KLMLHRAPLDVRPLIRQVATALRPQLDAKHQRLNLDLSETPPDDAPPL 907


>gi|153832261|ref|ZP_01984928.1| sensory box sensor histidine kinase/response regulator [Vibrio
           harveyi HY01]
 gi|148871572|gb|EDL70427.1| sensory box sensor histidine kinase/response regulator [Vibrio
           harveyi HY01]
          Length = 867

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 109/389 (28%), Positives = 176/389 (45%), Gaps = 14/389 (3%)

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             +   +++ +  +V QL  + E   D I I +  G I   N A   L  Y + +   K 
Sbjct: 224 IKEQYQSQKALSEKVSQLAQVAEHARDAIIITDPVGKITWVNPAFETLTEYSLAEARDKT 283

Query: 497 FTVFLE-QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-- 553
            +  L+  NT +V     ++ +     Q +    L  TK  +       +  +       
Sbjct: 284 LSELLQGPNTQNVQLQKFSDSIQN--HQPVRTEVLNYTKSNQPYWGERDLSPVMNEHGQV 341

Query: 554 --YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
             + +   DISE  + + KLS   K + + +  KS+FLA +SHEIRTP+ AI+GFSE++ 
Sbjct: 342 QRFIVVERDISERIEIEKKLSDEVKKSARATKAKSEFLANMSHEIRTPMNAIMGFSEILL 401

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
                           + + +S   ++ ++ND+LD SK+E+GK+ L  EP  L E V  +
Sbjct: 402 E----SEKRNEQRSLLHLLHKSAGNLITLINDILDYSKVEAGKLTLIEEPFDLRELVESS 457

Query: 672 ISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQ-IIIST 729
            +L    AN+K + +      +I   ++ D   + QI LN++ NA+ FT  G   I I+ 
Sbjct: 458 TALCAYQANKKDLKLLVDMPLDIHAHVIGDRGRINQILLNLIGNAVKFTEEGHILIKITE 517

Query: 730 THTSNEEV-ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
             T    V    V DTG+G+    L   M  F Q+ NS   + EGTGLGL ++K +V   
Sbjct: 518 KRTPQGNVYCFDVIDTGIGIPEERLPHIMDKFEQVDNSITRKYEGTGLGLAISKRLVQMY 577

Query: 789 MGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
            G   + ST   G+       L   +  H
Sbjct: 578 GGDLSVTSTLGSGSCFSFSLKLCQQTPDH 606



 Score = 43.9 bits (102), Expect = 0.10,   Method: Composition-based stats.
 Identities = 24/267 (8%), Positives = 68/267 (25%), Gaps = 23/267 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID--PNNHIGDLLKRQNTWYGK 146
            D  G +  ++            +     L ++    +          D ++       +
Sbjct: 255 TDPVGKITWVNPAFETLTEYSLAEARDKTLSELLQGPNTQNVQLQKFSDSIQNHQPVRTE 314

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
              +       +   DL+  P+ + + +    R   +        +         KK + 
Sbjct: 315 VLNYTKSNQPYWGERDLS--PVMNEHGQVQ--RFIVVERDISERIEIEKKLSDEVKKSAR 370

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
             + K    +    +         P +  M      L     ++   L    +    +  
Sbjct: 371 ATKAKSEFLANMSHEIRT------PMNAIMGFSEILLESEKRNEQRSLLHLLHKSAGNLI 424

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
           + + +  D+  +   + T  +    L+   + S    +++ +        +        V
Sbjct: 425 TLINDILDYSKVEAGKLTLIEEPFDLRELVESSTALCAYQANKKDLKLLVDMPLDIHAHV 484

Query: 327 DKCPIPFFVYSHGNLFYANPSFLLLTK 353
                   +   G +   N   L L  
Sbjct: 485 --------IGDRGRI---NQILLNLIG 500



 Score = 40.8 bits (94), Expect = 0.95,   Method: Composition-based stats.
 Identities = 20/144 (13%), Positives = 44/144 (30%), Gaps = 7/144 (4%)

Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
                 E  +   +  +       +    G + + NP+F  LT+Y   +       LS L
Sbjct: 230 SQKALSEKVSQLAQVAEHARDAIIITDPVGKITWVNPAFETLTEYSLAEA--RDKTLSEL 287

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
           L  P   +    K      S +        +     + +       +     N+  +   
Sbjct: 288 LQGPNTQNVQLQK---FSDSIQNHQPVRTEVLNYTKSNQPYWGERDL-SPVMNEHGQVQR 343

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQ 453
              +E +  +    ++K+  EV +
Sbjct: 344 FIVVERDISERIEIEKKLSDEVKK 367


>gi|209528424|ref|ZP_03276859.1| PAS/PAC sensor signal transduction histidine kinase [Arthrospira
           maxima CS-328]
 gi|209491140|gb|EDZ91560.1| PAS/PAC sensor signal transduction histidine kinase [Arthrospira
           maxima CS-328]
          Length = 705

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 103/392 (26%), Positives = 176/392 (44%), Gaps = 14/392 (3%)

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
              +    ++ R  +  +     +  SI E  ++GI     +G  +S N A++++ GY  
Sbjct: 282 VGEMFSNTIERRRTEEVLRQTEAKYRSIFENAAEGICQTTPDGRYISANPALARILGYDS 341

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
            + L    T    Q                         +    ++   + +    + + 
Sbjct: 342 PEDLIANLTDVSTQLYVKPTRRAEFVAAIAKSSVISGFESQVYRQDGTTIWISENARAVF 401

Query: 550 FSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
            +    +    T+ DI+E K     L  AK+ AE  +  KS FLA +SHE+RTPL AIIG
Sbjct: 402 DAMGELVCYEGTVEDITEGKTAAEALERAKEAAETANRAKSTFLANMSHELRTPLNAIIG 461

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
           +SE++  +    LG    +     I  +G  +L ++ND+LDISKIE+G+M+L  E   + 
Sbjct: 462 YSEILSEEA-EELGYEDIVPDLERIYTAGKNLLTLINDILDISKIEAGRMDLFLEAFDIS 520

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725
             +   +   Q   ++    +     +NI  + AD+  V+QI LN+LSNA  FT + G+I
Sbjct: 521 SLLESVMGTAQPLMSKNNNTLTVDCPDNIGIMYADVTKVRQILLNLLSNAAKFT-TNGKI 579

Query: 726 IISTTH-------TSNEEV-ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
            +  +          +  V   +V DTG+GM+  + E+  +PF Q   S   R  GTGLG
Sbjct: 580 KLEVSRVSSLPYSQESGSVLEFKVHDTGIGMSQEQQEQLFQPFTQGDASTTRRYGGTGLG 639

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           L ++        G   + ST  +G+  +++ P
Sbjct: 640 LAISDRFCQMMGGNIQVESTLGEGSTFKVVIP 671



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/171 (12%), Positives = 48/171 (28%), Gaps = 7/171 (4%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNTWYG 145
                G     +  L + +G  + + +   L DVS  L++ P         + + +   G
Sbjct: 319 QTTPDGRYISANPALARILGYDSPEDLIANLTDVSTQLYVKPTRRAEFVAAIAKSSVISG 378

Query: 146 -KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            ++ ++  +GT   + I   A  ++    E   + G   V             +R  +  
Sbjct: 379 FESQVYRQDGTT--IWISENARAVFDAMGELVCYEG--TVEDITEGKTAAEALERAKEAA 434

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255
              +  K    +    +              +  +   L       D    
Sbjct: 435 ETANRAKSTFLANMSHELRTPLNAIIGYSEILSEEAEELGYEDIVPDLERI 485



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 13/147 (8%), Positives = 34/147 (23%), Gaps = 6/147 (4%)

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365
                     + E       +            G    ANP+   +  Y S +D+     
Sbjct: 291 ERRRTEEVLRQTEAKYRSIFENAAEGICQTTPDGRYISANPALARILGYDSPEDLIAN-- 348

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
           L+ +     +      + V                  +      ++ ++       +   
Sbjct: 349 LTDVSTQLYVKPTRRAEFVAAIAKSSVISGFE---SQVYRQDGTTIWISENARAVFDAMG 405

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVM 452
           E +   G   +  + +     +E    
Sbjct: 406 ELVCYEGTVEDITEGKTAAEALERAKE 432



 Score = 41.2 bits (95), Expect = 0.74,   Method: Composition-based stats.
 Identities = 8/58 (13%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 534 KEEKLLSLRIIIKKLPFS-SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
           K+ ++  +     K+         +  DI+E K+ +  L +  +  +  ++  + F++
Sbjct: 43  KDGRIFEVYSHPSKVGNKLVGRVWSFRDITERKRVEKALQNRVEFEQLITNLSTYFIS 100


>gi|119509764|ref|ZP_01628909.1| Signal Transduction Histidine Kinase (STHK) with CheB and CheR
            activity [Nodularia spumigena CCY9414]
 gi|119465630|gb|EAW46522.1| Signal Transduction Histidine Kinase (STHK) with CheB and CheR
            activity [Nodularia spumigena CCY9414]
          Length = 1389

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 124/674 (18%), Positives = 255/674 (37%), Gaps = 41/674 (6%)

Query: 156  NLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHS 215
            N  VP+  + + +    +          V   ++D  P       +  F  L       +
Sbjct: 588  NREVPVSKSGIQMRDNEQ----------VRQIKIDVVPFKPPAAREWYFLVLLASSSSST 637

Query: 216  SVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDF 275
            ++ +            P    + ++  L +  A   + L++       + E      E+ 
Sbjct: 638  AILEAVSPPGRTGRRKP-NEQEQEIKRLKQELAANKEYLQSIIEEQQATNEDLRAANEEI 696

Query: 276  HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA--YFDEGENLTPETVDKCPIPF 333
             + N    +  +   T +   + + E L+  N          +E  N     +    IP 
Sbjct: 697  LSSNEELQSTNEELETAKEEIQATNEELNTINDELQRRNIQSNEVTNDLQNLLSSINIPI 756

Query: 334  -FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
              +  +  +    P    +    S D       ++  L+ P L          L      
Sbjct: 757  LMLGGNLQIRRYTPVAEKIFNLISSDMGRPISDINHNLNIPDLEKQILDVIGTL------ 810

Query: 393  CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
                + +   +Q        +   P+   +   +      I  +  D + +  ++     
Sbjct: 811  ----NFKTQEVQDKNGRWYDLRIRPYRTIDNKID--GAVVILVDIDDLKRSSEQLRTSRD 864

Query: 453  QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP-SVMNH 511
             + +I++   + + +++    ++S N      F     +  ++              +  
Sbjct: 865  YVQAIVDTMRESLVVLDVNLRVISANEFFYDTFQVSPAETEQRLIYEMGNGQWNIPQLRS 924

Query: 512  YLTEILSLDLR-QTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-YSLTMHDISEWKQEKN 569
             L EIL    + Q LE          K++ L      L  +     L + DI++ KQ + 
Sbjct: 925  LLEEILPHHNQFQGLEVEHNFEQIGHKIMRLNARKMTLTDNREMILLVIEDITQQKQLEA 984

Query: 570  KLSH-------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
            + +H       A+  AE  +  K +FL+ +SHE+R PL +++G+S++++ ++F       
Sbjct: 985  ERTHLLGQEQSARNAAEAANRAKDEFLSILSHELRNPLNSMLGWSKLLQKKQF---DQAT 1041

Query: 623  YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
              +    I+RS      ++ DLLDIS+I +G++ +  + + L   +  A+ +V+  A  K
Sbjct: 1042 INKGLAAIERSAQAQAHLIKDLLDISRISAGRLRIDAQKLDLVSVIESAMEVVRFSAEAK 1101

Query: 683  RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
             I I ++ A     ++ D   ++Q+  N+LSNAI FTPSGG++ IS  +T   +  +++ 
Sbjct: 1102 NIQIESNLAPAPRSMVGDANRLQQVFWNLLSNAIKFTPSGGKVTISLDYTDF-QAQIQIS 1160

Query: 743  DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKG 801
            DTG G++   L    + F Q   S+     G GLGL + + +V+ + G     S    +G
Sbjct: 1161 DTGYGISADFLPHVFERFRQADGSRTRSNPGLGLGLSIVRYLVELHGGTIDAESQGEGQG 1220

Query: 802  TLIEIIFPLYDTSH 815
                +  PL     
Sbjct: 1221 ATFTVRLPLQAPQQ 1234


>gi|91791902|ref|YP_561553.1| ATP-binding region, ATPase-like protein [Shewanella denitrificans
           OS217]
 gi|91713904|gb|ABE53830.1| multi-sensor hybrid histidine kinase [Shewanella denitrificans
           OS217]
          Length = 1233

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 117/508 (23%), Positives = 195/508 (38%), Gaps = 39/508 (7%)

Query: 320 NLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
            L    +D  P    F    G     N S   +  Y   + I   G  S  L +P+    
Sbjct: 458 ALLRSLIDSIPEAIVFKDQEGKYLGCNKSAEHMLGYSESEMI---GMTSVELTSPEQG-- 512

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNR--ENSLAMTFIPFEKANQFPENMPQNGIEPE 436
                  +   D   +   A L   +       S+ +  +     N+  E +    +  +
Sbjct: 513 -----ARIRLEDSQVLKDRAALRYQEKVDISGKSVLLDILKLPFYNRRGELLGLISVWRD 567

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIA--IINREGIILSTNRAVSKLFGYPVED--I 492
                 +  ++ +   +    ++A  DG+    ++ E II   N +   + GY   +   
Sbjct: 568 VTREYQSAEQLRLSEERYHLAMDAVEDGLWDWYLDSEQII--CNPSYYSMLGYETNEFPA 625

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR-----IIIKK 547
           L       +  +    +  Y  ++   +     E      TK  + L +      +    
Sbjct: 626 LISSIEELIHPDDRDRVKTY-RDLYLSEPSGAYETEFRMRTKSGRYLWVLSRGRVVEFTA 684

Query: 548 LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
               S    T  DI+  K  +  L  AK  AE  + +KS+FLA +SHEIRTP+ AIIG  
Sbjct: 685 DGMPSRMLGTHKDITRQKSNEVALLEAKHDAELANMYKSEFLANMSHEIRTPMNAIIGML 744

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
           ++    +       +  +Y N    S   +L I+ND+LD SKIE+GK+ L   P SL++ 
Sbjct: 745 QLASRTQLTL----QQQDYLNKAGFSAESLLRIINDILDFSKIEAGKLELESVPFSLEKV 800

Query: 668 VSEAISLVQLYANEKRILIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726
           +   I +  L A EK + +           +  D   + Q+ +N+LSNA+ FT  G    
Sbjct: 801 LDHVIDMNALSAQEKGVELLLFSPLTTGLTLKGDPLRLGQVLVNLLSNAVKFTQDG---E 857

Query: 727 ISTTHTSNEE------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
           I        E      +   VRDTG+G++  +       F Q   S   +  GTGLGL +
Sbjct: 858 IELGCEDVGERDTQISLKFWVRDTGIGISREQQANLFDAFSQADGSTTRQYGGTGLGLSI 917

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           +K +V    G   + S P +G+      
Sbjct: 918 SKHLVSMMGGNLSVESEPQQGSTFSFTL 945



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/211 (15%), Positives = 64/211 (30%), Gaps = 12/211 (5%)

Query: 79  IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL-HIDPNNHIGDLL 137
                   +  D  G     ++     +G    +MIGM   +++              +L
Sbjct: 465 DSIPEAIVFK-DQEGKYLGCNKSAEHMLGYSESEMIGMTSVELTSPEQGARIRLEDSQVL 523

Query: 138 KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN-RVDNDPRAL 196
           K +     +     ++ +   V +D+  LP Y+R  E  G     +     R       L
Sbjct: 524 KDRAALRYQE---KVDISGKSVLLDILKLPFYNRRGELLGL--ISVWRDVTREYQSAEQL 578

Query: 197 GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK----NKVSSLTEYYAHKDD 252
               ++    +  ++ G      +   I    S    L  +      + S  E   H DD
Sbjct: 579 RLSEERYHLAMDAVEDGLWDWYLDSEQIICNPSYYSMLGYETNEFPALISSIEELIHPDD 638

Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQY 283
             + + Y  L   E S   + +F     +  
Sbjct: 639 RDRVKTYRDLYLSEPSGAYETEFRMRTKSGR 669


>gi|189425046|ref|YP_001952223.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189421305|gb|ACD95703.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 767

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 114/583 (19%), Positives = 212/583 (36%), Gaps = 21/583 (3%)

Query: 242 SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301
           SL      +       +  +L +  +          + +           +         
Sbjct: 31  SLFVLDMTRRQEAVALQQHVLQA-RALTQSVSASSAVWVASRDYSGLQEIIAALEHYPNL 89

Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPI-PFFVYSHGNLFYANPSFLLLTKYKSVDDI 360
             +                     +   P  P        +   + +  +L   K +  +
Sbjct: 90  AHAIVLDSRGQVLAHSDRKRIGLYLTGLPDQPLLQVLQKTIRMVDVASPILLGGKPIGWV 149

Query: 361 E---IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA---RLHTIQWNRENSLAMT 414
                  GL   +     +        ++  +    +       RL  IQ   +      
Sbjct: 150 RIGLNGKGLEADIAEIHRNGLIFALAAVMLGALLAVLTGRYLTRRLDLIQEVVDQVETGN 209

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRK-MEIEVMQLCSILEATSDGIAIINREGI 473
                +     E           +D    + + ++    +  S++E   D I I +  G 
Sbjct: 210 ADVRVQLAGNDEAKRLGLAVNAMLDALSQRAESLQQSEQRFRSMIENAGDAIYIHDHNGK 269

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
           ILS N+      GY ++++L  P ++   Q     +        +   R  +   T+ + 
Sbjct: 270 ILSANQVCCCQTGYTLDELLMSPVSLVDRQIDVQTLEEICRLATAAPARFPMTLKTVHTR 329

Query: 534 KEEKLLSLRIIIK--KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
           K+     + + +          +   + DI+E K+ +++L  AK  AE  ++ KS+FLA 
Sbjct: 330 KDGSSFPVEVRLSLLPAGDDVHFVAMVRDITERKRAEDELLRAKAAAETANTTKSEFLAN 389

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           +SHEIRTP+  +IG +++++              Y  YI+     ++ ++NDLLDISKIE
Sbjct: 390 MSHEIRTPMNGVIGNAQLLRFTDL----TEEQSRYLEYIEADAKHLVSVINDLLDISKIE 445

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALN 710
           +GKM L     SL   +++ +  +      K ++  T  AN +P  +  D   +KQI  N
Sbjct: 446 AGKMELEQTSFSLRGCINDLLKPMTPRIATKGLIFNTEIANTVPDALTGDQLRLKQILRN 505

Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
           ++ NAI FT  G  I +      + E        V DTG+G+    LE+   PF Q  +S
Sbjct: 506 LVGNAIKFTDQGS-ITLRVELLEHSENKALFYFSVIDTGIGIPQEALERLFTPFTQADSS 564

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
              +  GTGLGL +   +     G   + S+   G+   +  P
Sbjct: 565 VTRKFGGTGLGLSICNRLAGLMGGNISVESSEGAGSCFHVTLP 607



 Score = 45.8 bits (107), Expect = 0.033,   Method: Composition-based stats.
 Identities = 15/139 (10%), Positives = 35/139 (25%), Gaps = 9/139 (6%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI---GDLLKRQNTWYGK 146
           D +G +   ++      G    +++   +  V   + +     I         +     K
Sbjct: 265 DHNGKILSANQVCCCQTGYTLDELLMSPVSLVDRQIDVQTLEEICRLATAAPARFPMTLK 324

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
           T     +G++  V + L+ LP               +V              R       
Sbjct: 325 TVHTRKDGSSFPVEVRLSLLPAGDD------VHFVAMVRDITERKRAEDELLRAKAAAET 378

Query: 207 LHEIKKGHSSVEKEKYDIF 225
            +  K    +    +    
Sbjct: 379 ANTTKSEFLANMSHEIRTP 397


>gi|298249868|ref|ZP_06973672.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297547872|gb|EFH81739.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 852

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 112/734 (15%), Positives = 239/734 (32%), Gaps = 52/734 (7%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK-------RQNTW 143
             G   EIS+           +++G    ++           +   L        R    
Sbjct: 151 PEGLALEISQRPLADAHLRREEVVGKPFIEI---PWWSYAPAVQRQLHTAIEQASRGKIV 207

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
           Y +  + P EG   Y+ + +   P    +R        G            A    L   
Sbjct: 208 YFEARIRPQEG--WYLDLAVTITPHLDADRHVEYLIYAG--RDITARKCAEAEIHALVDA 263

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
              L    +       + ++   +      +        L   +      +++     + 
Sbjct: 264 IPQLVWTAR--PDGSHDSFNQRWRDYTGLSIEEAQGEGWLQCLHPEDRQRVRSIWQCAVQ 321

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP----SLSAYFDEGE 319
           +  +   E    H               +++ + +  ++                  E +
Sbjct: 322 TGGAYETELRLRHGTTGEYRWFLARAMPVRDETGQIMKWFGTCTDIEDQKRTEQQLKESQ 381

Query: 320 NLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
                  +  P   +     G + Y N  +   T + + + ++  G          L   
Sbjct: 382 EHFRVLAETVPQLVWTTQPDGRVDYVNRRYCQYT-HAAFEQLQDYGW------RQFLHPE 434

Query: 379 NAIKPVMLY-RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
           +A   V L   + +T             N  +            ++  + +   G   + 
Sbjct: 435 DAEYIVALRQHTLQTGEPYEIEYRFRNGNTGSYRWFLTRAMPIRDETGQVVKWFGTCTDI 494

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREG-IILSTNRAVSKLFGYPVEDILRKP 496
            D +  +  +     ++ +++ +   GI I   EG  I+  N    ++ GY  ED+    
Sbjct: 495 EDQKRTEEALRQSQERVSTLMNSNIIGINI--AEGEQIVDANDTFLRMTGYTREDLHAGN 552

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI-IIKKLPFSSCYS 555
                      +             +           K+   L + +  +      S   
Sbjct: 553 INWLHMTPPEYLARTLQAHEELDTQQSMTPYEKEYVCKDGSRLPVVVGRVTLQANPSQAI 612

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
             + D S  K+ + +              K DF++  SHE++TPLTA+   ++ +  +R 
Sbjct: 613 AIVLDNSARKELEQR--------------KDDFISMASHELKTPLTALKMQTQ-LARKRL 657

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
                       + ++R    +  ++ +LLD+SKI++G++    E V LD  + E    +
Sbjct: 658 ERQSPHEAATVLSKVERPVKQLERLIGELLDVSKIQAGRLEYQQETVDLDTLLHEVADTM 717

Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
           Q      RIL+R     ++   LAD   + Q+  N+LSNAI ++P    + +  + + + 
Sbjct: 718 QHAHPSHRILVRGVVQASL---LADRDRLGQVFTNLLSNAIKYSPGAETVEMDLSASEDA 774

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            V +RV D G+G+   + +K    F ++   +Q    G G+GL +   ++  + G   + 
Sbjct: 775 -VTIRVHDHGLGIPREQRDKIFDRFYRVAGPKQKAIPGLGMGLYIVAEIIKGHGGTITVD 833

Query: 796 STPAKGTLIEIIFP 809
           S   KG+   +  P
Sbjct: 834 SKVGKGSTFTVTLP 847



 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 50/501 (9%), Positives = 113/501 (22%), Gaps = 37/501 (7%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           DA       +      +G    ++ G  L   +    +        +LK + T       
Sbjct: 34  DAEMT-VYANASAQSILGATQEEVCGQPLWGCAPQ--LVSTALYQAVLKARQTRKLTEVE 90

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
           +    T          +P        +G         N      +   ++ ++K+ +L E
Sbjct: 91  YRSPVTQ--TWFHAQIMP--------TGVGLAVFFQENTEPKRFKDALRQSEQKYLNLLE 140

Query: 210 IKKGHSSVEKEKYDIFSQQS---PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
                 +V   +              HLR +  V                ++      E+
Sbjct: 141 SISDRVAVLTPEGLALEISQRPLADAHLRREEVVGKPFIEIPWWSYAPAVQRQLHTAIEQ 200

Query: 267 SSLP----EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
           +S       +                     +  +     +      +     +      
Sbjct: 201 ASRGKIVYFEARIRPQEGWYLDLAVTITPHLDADRHVEYLIYAGRDITARKCAEAE---I 257

Query: 323 PETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
              VD  P   +     G+    N  +   T     +  +  G L  L            
Sbjct: 258 HALVDAIPQLVWTARPDGSHDSFNQRWRDYTGLSIEEA-QGEGWLQCLHPED---RQRVR 313

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
                            RL                     ++  + M   G   +  D +
Sbjct: 314 SIWQCAVQTGGAYETELRLR--HGTTGEYRWFLARAMPVRDETGQIMKWFGTCTDIEDQK 371

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
             +++++        + E     +     +G +   NR   +      E +    +  FL
Sbjct: 372 RTEQQLKESQEHFRVLAETVPQLVWTTQPDGRVDYVNRRYCQYTHAAFEQLQDYGWRQFL 431

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE-EKLLSLRIIIKKLPFSSC----YSL 556
                  +       L        E                      +   +     +  
Sbjct: 432 HPEDAEYIVALRQHTLQTGEP--YEIEYRFRNGNTGSYRWFLTRAMPIRDETGQVVKWFG 489

Query: 557 TMHDISEWKQEKNKLSHAKKI 577
           T  DI + K+ +  L  +++ 
Sbjct: 490 TCTDIEDQKRTEEALRQSQER 510



 Score =  118 bits (295), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 38/384 (9%), Positives = 92/384 (23%), Gaps = 27/384 (7%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD-LLKRQNTW 143
             W     G     ++      G    +  G                 I    ++    +
Sbjct: 267 LVWTARPDGSHDSFNQRWRDYTGLSIEEAQGEGWLQCLHPEDRQRVRSIWQCAVQTGGAY 326

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +        T  Y      A+P+     +    + FG               K   + 
Sbjct: 327 ETE-LRLRHGTTGEYRWFLARAMPVRDETGQI--MKWFGTCTDIEDQKRTEQQLKESQEH 383

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQS------PPPHLRMKNKVSSLTEYYAHKDDVLKTE 257
           F  L E         +    +                ++++       +     + +   
Sbjct: 384 FRVLAETVPQLVWTTQPDGRVDYVNRRYCQYTHAAFEQLQDYGWRQFLH-PEDAEYIVAL 442

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
           +   L + E    E    +    +          +++ + +  ++             +E
Sbjct: 443 RQHTLQTGEPYEIEYRFRNGNTGSYRWFLTRAMPIRDETGQVVKWFGTCTDIEDQKRTEE 502

Query: 318 GENLTPETVDKCP----IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
               + E V        I   +     +  AN +FL +T Y   D    AG ++ L   P
Sbjct: 503 ALRQSQERVSTLMNSNIIGINIAEGEQIVDANDTFLRMTGYTREDL--HAGNINWLHMTP 560

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
                  ++      + ++          +  +      +      +AN           
Sbjct: 561 PEYLARTLQAHEELDTQQSMTPYEKEY--VCKDGSRLPVVVGRVTLQANPSQAIA----- 613

Query: 434 EPEDVDTRINKRKMEIEVMQLCSI 457
               V     ++++E       S+
Sbjct: 614 ---IVLDNSARKELEQRKDDFISM 634



 Score = 84.3 bits (207), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 38/265 (14%), Positives = 78/265 (29%), Gaps = 22/265 (8%)

Query: 314 YFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                       ++  P   F +       YAN S   +      +             A
Sbjct: 10  LTPASSETLVTLLETLPGALFVIDDAEMTVYANASAQSILGATQEEVCGQPLWG----CA 65

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
           P+L      + V+  R  R       R               F         P  +    
Sbjct: 66  PQLVSTALYQAVLKARQTRKLTEVEYR--------SPVTQTWFHAQI----MPTGVGLAV 113

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
              E+ + +  K  +     +  ++LE+ SD +A++  EG+ L  ++          E++
Sbjct: 114 FFQENTEPKRFKDALRQSEQKYLNLLESISDRVAVLTPEGLALEISQRPLADAHLRREEV 173

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLR-QTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
           + KPF      +    +   L   +    R + +        +E   L L + I     +
Sbjct: 174 VGKPFIEIPWWSYAPAVQRQLHTAIEQASRGKIVYFEARIRPQEGWYLDLAVTITPHLDA 233

Query: 552 SCYSLTM----HDISEWKQEKNKLS 572
             +   +     DI+  K  + ++ 
Sbjct: 234 DRHVEYLIYAGRDITARKCAEAEIH 258



 Score = 76.2 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/394 (7%), Positives = 97/394 (24%), Gaps = 17/394 (4%)

Query: 55  TDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI 114
           TD   +  +     +S+  F         +  W     G +  ++    +       ++ 
Sbjct: 365 TDIEDQKRTEQQLKESQEHFRVLAETVP-QLVWTTQPDGRVDYVNRRYCQYTHAAFEQLQ 423

Query: 115 GMRLCDVSDILHIDPNNHIG-DLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNR 173
                        +    +    L+    +      +    T  Y      A+PI     
Sbjct: 424 DYGWRQFLHPEDAEYIVALRQHTLQTGEPYE-IEYRFRNGNTGSYRWFLTRAMPIRDETG 482

Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ---SP 230
           +    + FG               ++  ++ S L        ++ + +  + +       
Sbjct: 483 QVV--KWFGTCTDIEDQKRTEEALRQSQERVSTLMNSNIIGINIAEGEQIVDANDTFLRM 540

Query: 231 PPHLRMKNKVSSLTEYYAHKDDVLKTEKY--PLLTSEESSLPEQEDFHTINLNQYTKKQY 288
             + R      ++   +    + L         L +++S  P ++++   + ++      
Sbjct: 541 TGYTREDLHAGNINWLHMTPPEYLARTLQAHEELDTQQSMTPYEKEYVCKDGSRLPVVVG 600

Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSF 348
             TLQ       + ++     S     ++ ++                       A    
Sbjct: 601 RVTLQA---NPSQAIAIVLDNSARKELEQRKDDFISMASHELKTPLTALKMQTQLARKRL 657

Query: 349 LLLTKYKSVDDI----EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
              + +++   +         L  L+             +   +           +    
Sbjct: 658 ERQSPHEAATVLSKVERPVKQLERLIGELLDVSKIQAGRLEYQQETVDLDTLLHEVADTM 717

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
            +   S  +      +A+   +      +    +
Sbjct: 718 QHAHPSHRILVRGVVQASLLADRDRLGQVFTNLL 751



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/145 (11%), Positives = 48/145 (33%), Gaps = 9/145 (6%)

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
                L ++LE     + +I+   + +  N +   + G   E++  +P      Q   + 
Sbjct: 13  ASSETLVTLLETLPGALFVIDDAEMTVYANASAQSILGATQEEVCGQPLWGCAPQLVSTA 72

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTK-EEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQE 567
           +   + +                 +   +     +I+          ++   + +E K+ 
Sbjct: 73  LYQAVLKARQTRKLT----EVEYRSPVTQTWFHAQIMPT----GVGLAVFFQENTEPKRF 124

Query: 568 KNKLSHAKKIAEKESSHKSDFLARV 592
           K+ L  +++         SD +A +
Sbjct: 125 KDALRQSEQKYLNLLESISDRVAVL 149


>gi|228993315|ref|ZP_04153231.1| hypothetical protein bpmyx0001_40470 [Bacillus pseudomycoides DSM
           12442]
 gi|228766383|gb|EEM15026.1| hypothetical protein bpmyx0001_40470 [Bacillus pseudomycoides DSM
           12442]
          Length = 558

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 94/391 (24%), Positives = 184/391 (47%), Gaps = 26/391 (6%)

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           +           +   + +  +E E    +L +++E    G+ +I+  G I   NR+  +
Sbjct: 187 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYISLVNRSYKE 246

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542
           +F    E+ L + +         + +   + EI   +++   + +  LG  ++   +   
Sbjct: 247 IFHVTDEEYLDRLYYEAFLH---AEIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 303

Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
            II          L  HDI+E K+ +                + DFLA VSHE++TP+T+
Sbjct: 304 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 349

Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           I GFSE + +   G + N ++ E + N I +    +  ++ DLLD+SKIE     L+   
Sbjct: 350 IKGFSETLLD---GAMENQQFCEHFLNIILKESERMQGLIEDLLDLSKIEQQGFKLNMGT 406

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           V + E + E   +++  + +K I ++     ++  ++ D   +KQI +N+++NAI +TP+
Sbjct: 407 VEMKELLEEIKMVLENKSQDKEISLQVDVLRHV-SVIGDPSRLKQIFINLVNNAIVYTPA 465

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           GG + +           ++V DTG+G++  E+ +  + F ++  ++     GTGLGL + 
Sbjct: 466 GGTVSVEL-LEDEHNAYIKVSDTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIV 524

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
           K +V+A+ G   + S   +GT   +  P  D
Sbjct: 525 KHLVEAHHGTVTVESEVGEGTTFTVALPKSD 555


>gi|229087144|ref|ZP_04219294.1| hypothetical protein bcere0022_37170 [Bacillus cereus Rock3-44]
 gi|228696212|gb|EEL49047.1| hypothetical protein bcere0022_37170 [Bacillus cereus Rock3-44]
          Length = 470

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 96/392 (24%), Positives = 186/392 (47%), Gaps = 28/392 (7%)

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           +           +   + +  +E E    +L +++E    G+ +I+  G I   NR+  +
Sbjct: 99  DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYISLVNRSYKE 158

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +F    E+ L + +         + +   + EI   ++ +  +++ L    E K   +  
Sbjct: 159 IFHVTDEEYLDRLYYEAFLH---AEIIELVEEIFMTEV-KVRKQMLLSLGIERKHFEVYG 214

Query: 544 --IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
             II          L  HDI+E K+ +                + DFLA VSHE++TP+T
Sbjct: 215 APIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPIT 260

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
           +I GFSE + +   G + N ++ E + + I +    +  ++ DLLD+SKIE     L+  
Sbjct: 261 SIKGFSETLLD---GAMENQQFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMG 317

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720
            V + E + E   +++  + EK I ++     ++  ++ D   +KQI +N+++NAI +TP
Sbjct: 318 TVDMKELLGEIKMVLENKSQEKEISLQVDVLRHV-SVIGDPSRLKQIFINLVNNAIVYTP 376

Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
           +GG + ++          ++V DTG+G++  E+ +  + F ++  ++     GTGLGL +
Sbjct: 377 AGGTVSVAL-LEDEHNAYIKVSDTGIGISTEEIPRIFERFYRVDKARSRNTGGTGLGLSI 435

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
            K +V+A+ G   + ST  +GT   +  P  D
Sbjct: 436 VKHLVEAHHGTITVDSTVGEGTTFTVALPKAD 467


>gi|71905682|ref|YP_283269.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
 gi|71845303|gb|AAZ44799.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
          Length = 1193

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 131/768 (17%), Positives = 260/768 (33%), Gaps = 57/768 (7%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKM--IGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144
           W+         IS      +G     +         ++        + +   L       
Sbjct: 24  WSWHTETRQFRISRNFHSLLGYSPDALPETPEAWLALAHADERPQLSTLFARLSANTARG 83

Query: 145 GKTTLWPIEGT-NLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                  ++ T  L+   ++      + +            +         A  +    +
Sbjct: 84  YPPFTLRLKHTNGLWHWFEVRTPCTGTGDGA---APLVITFNEITQQKQAEAALRDSQLR 140

Query: 204 FSHLH----------EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253
           F  L+          + +   +   +    +F  ++     +  + +   TE++    D 
Sbjct: 141 FRALYNTSPLAFILWDRQGHITEWNRRAEQMFGWKAAEVIGKQVHHLLLSTEHHEAFADT 200

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
           +         + + + P       + +  +                   L          
Sbjct: 201 V-RAVMHGTGTGKFTGPAHGKDGVLLVCNWYNVALRTAQGKLVGILSLLLDITEERLTHQ 259

Query: 314 YFDEGENLTPETVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSV---------DDIEIA 363
             ++ E +    V+  P    +         AN     L     +         D +   
Sbjct: 260 RIEKSEKIYRTLVETSPDAILLLGLDGGLKTANQQAHRLFGLDEMLDLDSTNVRDLLPDN 319

Query: 364 GGLSTLLDAPKL-SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
                 LD P+  +     + + + R D     A     TI  +      +         
Sbjct: 320 ASTEHFLDDPEDFNGFIVTRQLSMQRLDGGRFDADTAFTTIMDSTGQPTGIVLFA-RDVT 378

Query: 423 QFPENMPQNGIEPEDVDTRINKRK--MEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
              +   +     ED++  + +R   +E     L  I++ +     +++ +  I   N A
Sbjct: 379 GKLQAERELEAHREDLERLVQERTYDLENAHDTLAKIIDGSPVPTLVLDADHKITHWNEA 438

Query: 481 VSKLFGYPVEDILR-KPFTVFLEQNTPSVMNHY-LTEILSLDLRQTLEKITLGSTKEEKL 538
             ++ G    DI+           +   +M    L   ++       +K       +   
Sbjct: 439 CEQIIGVKAGDIVGTSNQWKAFYPSQRPIMADLVLNGEMAQIQALYSDKYRRSRLVQGGY 498

Query: 539 ----------LSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSH 584
                       L      L       +    T+ DI+E KQ +  L+ AK  AE  +  
Sbjct: 499 EAEDFFPMFKRWLFFTAAPLYDKQGRIVGAIETLQDITERKQAEIALTEAKHAAEAAAEA 558

Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
           K+ FLA +SHEIRTP+ A+IG + ++           +  +Y + I  SG ++L ++ND+
Sbjct: 559 KAAFLANMSHEIRTPMNAVIGLAHLLLKGDLSG----KQRDYISRIHGSGQMLLGLINDI 614

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRS 703
           LD SKIE+G+M L     +LD+ +    S++   A EK ++++     ++P  +L D   
Sbjct: 615 LDFSKIEAGRMVLEETEFALDDVLDNVTSVLLHRAQEKGLIMQYVVEPDVPTNLLGDPLR 674

Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTH----TSNEEVILRVRDTGVGMTNYELEKAMKP 759
           + QI +N+L NA+ FT SG  I +        T+  E+ + V+DTGVGM+  + +   + 
Sbjct: 675 LAQILINLLGNALKFTASGS-ITVFVRRLPGNTARAELEIDVQDTGVGMSQEQQQVLFQA 733

Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           F Q  +S   +  GTGLGL + K +     G  ++ S    G+     
Sbjct: 734 FSQADSSITRKYGGTGLGLTICKRLAQLMRGDIWVTSQSGVGSTFTFT 781


>gi|20091095|ref|NP_617170.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
 gi|19916193|gb|AAM05650.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
          Length = 887

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 114/512 (22%), Positives = 212/512 (41%), Gaps = 37/512 (7%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDI-------E 361
                   E + +     +       +     +   N     +  ++    +        
Sbjct: 75  RKAEEDLREKDQMYRALFEMSNDAVIISDGKKVLDINNKGCEIFGFREERPLNVSLISFI 134

Query: 362 IAGGLSTLLDAPKLSDNNAIK--PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
               LS L  A K +   A     +   +++   +     L  I  N      +      
Sbjct: 135 PPEYLSELQQALKETFKQASSCFEMRYQKAEGEIVDIEVSLSLIDRNNNIIHIVA----- 189

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI-ILSTN 478
                           +    +  +R  +    +  ++L+ T   I +I      I+  N
Sbjct: 190 ---------------QDITGVKNAERLEQENRERFKTVLDNTLCSILLIEASSRKIVDAN 234

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
               K  GY  ++++    +  +                     +  E I   +  ++  
Sbjct: 235 PVALKTTGYSEKELIGMVCSRLIC----QAGEERCNVPSLDPAGELSESILFKAGGDKIS 290

Query: 539 LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
           +   ++   +  +  +  +  D+SE K+ + +L  AK  AE  +   S+FLA +SHE+RT
Sbjct: 291 ILRNVVPVSIGGNGYFVESFIDLSERKKVEEELLQAKLAAEGANRAMSEFLATMSHELRT 350

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
           PLTAIIGFSE++  +  G   +    ++  +I  SG  +L ++N ++D+S+IE+GKM+L 
Sbjct: 351 PLTAIIGFSELMLGEATGEF-DELNRKFLGHISNSGKHLLSLINSVIDLSRIEAGKMDLE 409

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718
            +  SL +  ++  S+    A +K I +  +  ++   I AD    KQI  N++SNAI F
Sbjct: 410 PDFFSLYDIFADTKSISSPLALKKNISMDFNVESDFL-IYADRTRFKQIMYNLVSNAIKF 468

Query: 719 TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
           TP+GG + +     S   + + V DTG+G++  E++   KPF QI  +     E TGLGL
Sbjct: 469 TPAGGSVEV-VGRRSENRIRVTVSDTGIGISQDEIKHLFKPFKQINFALSREYESTGLGL 527

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            L+K  V+ + G+ ++ S P KG+      P+
Sbjct: 528 VLSKNFVEMHGGRIWVESEPGKGSTFTFEVPV 559



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 19/150 (12%), Positives = 50/150 (33%), Gaps = 5/150 (3%)

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
               +E      R  +  +  +     ++ E ++D + I + +  +L  N    ++FG+ 
Sbjct: 63  RWMELENTLTLYRKAEEDLREKDQMYRALFEMSNDAVIISDGK-KVLDINNKGCEIFGFR 121

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            E  L      F+     S +   L E                   E +++ + + +  +
Sbjct: 122 EERPLNVSLISFIPPEYLSELQQALKETFKQASSC---FEMRYQKAEGEIVDIEVSLSLI 178

Query: 549 PFSSCYS-LTMHDISEWKQEKNKLSHAKKI 577
             ++    +   DI+  K  +      ++ 
Sbjct: 179 DRNNNIIHIVAQDITGVKNAERLEQENRER 208


>gi|217975276|ref|YP_002360027.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS223]
 gi|217500411|gb|ACK48604.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS223]
          Length = 1629

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 125/782 (15%), Positives = 277/782 (35%), Gaps = 68/782 (8%)

Query: 90   DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNTWYGKT 147
            D  G +   ++   +  G      +G   C +     I         ++L  + +    T
Sbjct: 363  DTKGQITSWNQGAEQLFGYTEAHALGQSCCKLIVPASIVQEERALFSEVLAGKTSLNRIT 422

Query: 148  TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA----LGKRLDKK 203
            +    +G++L       A+PIY  + + +G      +       +       L   L+++
Sbjct: 423  SHQRQDGSHLSTSTT--AVPIYDEHGKIAGMSQ--TIRDITAQLEAERHILSLNASLERQ 478

Query: 204  FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY-----AHKDDVLKTEK 258
             +      +      +   D  +QQ           +  + + +       ++ ++    
Sbjct: 479  VTKRTHALQQALLENQTLLDTINQQLLYSVTDPNGVILEVNDNFCRISGYSREQLVGKTH 538

Query: 259  YPLLTSEESSLPEQEDFHTINLN---------------QYTKKQYFGTLQNNSKESFEYL 303
              L + E  +   +  +  IN                         G + +   +   ++
Sbjct: 539  AILKSGEHDASFWRAMWQQINAGQSWHGEICNLDKHQTLKWFDTVIGPVFDEYGKIERFV 598

Query: 304  SHRNHPSLSAYFDEGENLTPETVDKCPIP------FFVYSHGNLFYANPSFLLLTKYKSV 357
            + R   +        +N     +                  GN+   N     L  Y + 
Sbjct: 599  ALRIDITDRKLTQIEKNNLGSLLTNVLDAASEMSIIATDVQGNITIFNRGAERLLGYSAE 658

Query: 358  DDIEIAGGLSTLLDAPKLSDNNAIKP------------VMLYRSDRTCIAASARLHTIQW 405
            + I  +      L    +  +  +              +   R++ +      R  T   
Sbjct: 659  EMIGQSTPAPLHLLEEVMIRSAELSAEYGKDIQGFDVFIYKARAEGS----ETRNWTYVR 714

Query: 406  NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465
               +   ++       +   E +   GI  +     + ++ +      L    E    GI
Sbjct: 715  KDGSQFQVSLSVTAMRDSVGEIIGYLGIGVDISLMLLQQQALMTASSHLSKAAEVAQLGI 774

Query: 466  AIINREGIILSTNRAVSKLFG----YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
               N  G  L  N  +  ++        + +  + +++ +  +  +  +  L   +    
Sbjct: 775  WTWNLLGNSLEWNERMFAIYDQPESLREQGLTYEHWSMRVHPDDIAFADAKLKGAVEGTA 834

Query: 522  RQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAE 579
            +       + +    + +     I++    +         DI+E +Q +  L  AK+ A+
Sbjct: 835  QYDPIFRVVRTDGSIRYVQAAAQIERDKQGNAIRVIGINLDITEQQQLEETLRKAKQEAD 894

Query: 580  KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639
              S+ KS FLA +SHEIRTP+ A++G  ++I+          +  +Y N    +   +L 
Sbjct: 895  AASAAKSAFLANMSHEIRTPMNAVLGMLQLIQYTSLSR----QQQDYVNKTQTAAKSLLG 950

Query: 640  IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-IL 698
            ++ND+LD SKI++GK+ L   P S++  + +   ++     +K + +       +P  +L
Sbjct: 951  LLNDILDFSKIDAGKLALDLHPCSIELLMRDLAVVLSGNHGDKDVEVMFDLDTALPPWLL 1010

Query: 699  ADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVI--LRVRDTGVGMTNYELEK 755
            AD   ++QI +N+  NA+ FT  G  I+ I       + V   + + DTG+G+++ ++E+
Sbjct: 1011 ADQLRLQQILVNLAGNALKFTHHGQVIVGIECLRHEADTVTVQISITDTGIGISDEQIER 1070

Query: 756  AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE--IIFPLYDT 813
                F Q  +S   R  GTGLGL ++K ++     + ++ S    G+     + FP+   
Sbjct: 1071 IFTGFEQAESSTSRRFGGTGLGLAISKRLIGLMGSELHVTSKVGVGSRFWFDVTFPIIQV 1130

Query: 814  SH 815
              
Sbjct: 1131 EE 1132



 Score =  104 bits (260), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 53/426 (12%), Positives = 112/426 (26%), Gaps = 35/426 (8%)

Query: 168 IYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ 227
               + EF G RGFG +   RV +   A      ++        +   + + E+Y I   
Sbjct: 92  TRDVDHEFPGARGFGFIR--RVPSADEAAFIARVRQDDWPDFNIRQLHAHDGERYVIEYI 149

Query: 228 QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287
           +   P  R K  V       AH+                + +   +       +    + 
Sbjct: 150 E---PVDRNKAAVGLDIASEAHRKAAADAAMLSGEVRLSAPITLVQATGRPLQSFLILQP 206

Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPS 347
            +                             ++           P            N  
Sbjct: 207 IY--------------------RTGLVPKTQQDRLSAGYGWSYAPLVTNEVLMGLALNQK 246

Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
              L     + DI  A    +  +      +           D         +       
Sbjct: 247 MTKLF----LSDITQAERPISFFETHPDEASPLSAYRHKMTKDIFGRQWQIEVIAYPSFI 302

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
           ++           +      +    I    +  +  ++ +  +  +  S+LE + DGI  
Sbjct: 303 KSLHLNQPSLVLLSGCLFSLLLAALIAMWSISLQRKQQVLLEQARR-ASMLEHSLDGIIS 361

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
            + +G I S N+   +LFGY     L +     +   +       L   +       L +
Sbjct: 362 YDTKGQITSWNQGAEQLFGYTEAHALGQSCCKLIVPASIVQEERALFSEVLAGKTS-LNR 420

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESS 583
           IT    ++   LS       +            T+ DI+   + +  +       E++ +
Sbjct: 421 ITSHQRQDGSHLSTSTTAVPIYDEHGKIAGMSQTIRDITAQLEAERHILSLNASLERQVT 480

Query: 584 HKSDFL 589
            ++  L
Sbjct: 481 KRTHAL 486



 Score = 91.6 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 38/389 (9%), Positives = 103/389 (26%), Gaps = 29/389 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKRQNTWYGKT 147
            D +G + E+++   +  G    +++G     + S          +   +    +W+G+ 
Sbjct: 509 TDPNGVILEVNDNFCRISGYSREQLVGKTHAILKSGEHDASFWRAMWQQINAGQSWHGEI 568

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA--LGKRLDKKFS 205
                  T  +    +   P++    +   F    I   +R         LG  L     
Sbjct: 569 CNLDKHQTLKWFDTVIG--PVFDEYGKIERFVALRIDITDRKLTQIEKNNLGSLLTNVLD 626

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
              E+    + V+                  +  +   T    H  + +      L    
Sbjct: 627 AASEMSIIATDVQGNITIFNRGAERLLGYSAEEMIGQSTPAPLHLLEEVMIRSAELSAEY 686

Query: 266 ESSLPEQEDF----------------HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
              +   + F                   + +Q+        ++++  E   YL      
Sbjct: 687 GKDIQGFDVFIYKARAEGSETRNWTYVRKDGSQFQVSLSVTAMRDSVGEIIGYLGIGVDI 746

Query: 310 SLSAYFDE----GENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAG 364
           SL     +      +   +  +   +  + ++  GN    N     +  Y   + +   G
Sbjct: 747 SLMLLQQQALMTASSHLSKAAEVAQLGIWTWNLLGNSLEWNERMFAI--YDQPESLREQG 804

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
                       D+ A     L  +             ++ +  +   +      + ++ 
Sbjct: 805 LTYEHWSMRVHPDDIAFADAKLKGAVEGTAQYDPIFRVVRTDG-SIRYVQAAAQIERDKQ 863

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
              +   GI  +  + +  +  +     +
Sbjct: 864 GNAIRVIGINLDITEQQQLEETLRKAKQE 892


>gi|332703722|ref|ZP_08423810.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332553871|gb|EGJ50915.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 880

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 117/666 (17%), Positives = 240/666 (36%), Gaps = 46/666 (6%)

Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA 248
            D +         +       +     ++         ++         + V+ L    A
Sbjct: 89  ADVEMDVRQMIQGQLVVRTASMVADVLAINDLTDKYMYRERRWMLAWTASAVAFLAGVVA 148

Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFH-------TINLNQYTKKQYFGTLQNNSKESFE 301
               +L+      + S E++               + N         F  ++   +E   
Sbjct: 149 ALLYILQRRVVSPVVSLEAATKALSIGRLDHPIRVSGNDEVAKLAASFEDMRVALRERLA 208

Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIP---FFVYSHGNLFYANPSFLLLTKYKSVD 358
            LS  N  +  A  +  +           +     F  +   + Y NPS   +  +   +
Sbjct: 209 DLSKANRRAQEARDESEKRAAELDAALMSLAEGIIFYNTEHQITYLNPSAEKILGFSLEN 268

Query: 359 DIE-IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI- 416
             +  A     L    KL  +   K  ++                I     +  +     
Sbjct: 269 VSDLPADARVKLFTVRKLDGSIPTKEELVGWRALHGATVHGEEFIIYPQGSSLSSNILSS 328

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIIL 475
                      +          + +  +  +     +  SI   +   + + + + G ++
Sbjct: 329 AAPVRTSDGRTLGAIQTLVNITERKRTEEALRESEERYRSIFHNSHAVMLLADPQTGELV 388

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
             N A    +GY  E+  R              +  +   ++    ++  +         
Sbjct: 389 DVNPAACAYYGYSPEECRRMTIGQI----NTLPIEEFRARMMEAASKEQNKFEFRHRLAS 444

Query: 536 EKLLSLRIIIKKLPFSSCYSL--TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
            ++  + +    +       L   +HDI+E K+ +  L  AK  AE  +  KS+FLA +S
Sbjct: 445 GEVRDVEVYSGPVRVEGRLLLHSIVHDITERKRLEEDLFQAKAEAEAANRAKSEFLASMS 504

Query: 594 HEIRTPLTAIIGFSE-VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           HEIRTP+  +IG +E  +  +  G     +  +Y   + +S N +LDI+ND+LD+SKIE+
Sbjct: 505 HEIRTPMNGVIGLTELALMQEPKG-----KVRDYLGLVKQSANSLLDIINDILDLSKIEA 559

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNI 711
           G++ L      L + +      ++L A  KR+    +    +P  I  D   ++QI +N+
Sbjct: 560 GRVELENADFDLRDMLDSLFETMRLTAERKRLSFTAAIDPGVPDWIKGDEGRLRQIFVNL 619

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEE--------------VILRVRDTGVGMTNYELEKAM 757
           + NA+ +T +G Q+ +     +  +              +++ V+DTG+G+   +LEK  
Sbjct: 620 IGNAVKYTETG-QVSVHVGLENAHDSPVAGDSDKPEHICLLVSVKDTGIGIPKNKLEKIF 678

Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII--F-PLYDTS 814
            PF     ++  + +GTGLGL +   +V+   G+  + S P +G+         P  DT+
Sbjct: 679 DPFDT--GARGAKHDGTGLGLTITNRLVELMGGRIIVRSEPGQGSTFTFSAALEPASDTA 736

Query: 815 HPHDCI 820
              + +
Sbjct: 737 TTQESL 742



 Score = 47.3 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 35/407 (8%), Positives = 105/407 (25%), Gaps = 56/407 (13%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLC---DVSDILHIDP------NNHIGDLLKRQNT 142
              +  ++    K +G     +  +       +  +  +D              L    T
Sbjct: 248 EHQITYLNPSAEKILGFSLENVSDLPADARVKLFTVRKLDGSIPTKEELVGWRALH-GAT 306

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
            +G+  +   +G++L   I  +A P+ + +    G     +              +  ++
Sbjct: 307 VHGEEFIIYPQGSSLSSNILSSAAPVRTSDGRTLGAIQTLV--NITERKRTEEALRESEE 364

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM---KNKVSSLTEYYAHKDDVLKTEKY 259
           ++  +         +   +       +P           +   +T    +   + +    
Sbjct: 365 RYRSIFHNSHAVMLLADPQTGELVDVNPAACAYYGYSPEECRRMTIGQINTLPIEEFRAR 424

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
            +  + +     +      +      + Y G ++   +     + H          D  +
Sbjct: 425 MMEAASKEQNKFEFRHRLASGEVRDVEVYSGPVRVEGRLLLHSIVHDITERKRLEEDLFQ 484

Query: 320 NLTPETVDKCPIPFFVYSHGNLFYANPS---FLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
                                   AN +   FL    ++    +    GL+ L    +  
Sbjct: 485 AKAEA-----------------EAANRAKSEFLASMSHEIRTPMNGVIGLTELALMQEPK 527

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
                   ++ +S  + +     +  +                      E    +    +
Sbjct: 528 GKVRDYLGLVKQSANSLLDIINDILDLSK--------------IEAGRVELENADFDLRD 573

Query: 437 DVDTRINKRKMEIEVMQLC--SILE-ATSDGIAIINREGII--LSTN 478
            +D+     ++  E  +L   + ++    D   I   EG +  +  N
Sbjct: 574 MLDSLFETMRLTAERKRLSFTAAIDPGVPD--WIKGDEGRLRQIFVN 618


>gi|330507649|ref|YP_004384077.1| signal transduction histidine-protein kinase [Methanosaeta concilii
           GP-6]
 gi|328928457|gb|AEB68259.1| signal transduction histidine-protein kinase [Methanosaeta concilii
           GP-6]
          Length = 656

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 111/498 (22%), Positives = 197/498 (39%), Gaps = 23/498 (4%)

Query: 316 DEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
           +  ++   + +        V S G    Y NP+F  +      + I     +  L+    
Sbjct: 23  EIDKDFAHQVMATVGQGIVVSSEGWRFEYVNPAFARMVGRMPKELIGR--SMDELIHPHD 80

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
                 +      R      +  ARL  I+ +                Q  +        
Sbjct: 81  RP---ILIQARSRRQAGETSSYEARL--IRSDGCVFPVQVTG--TPRWQDGKFFGSIVAV 133

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
            +  + +  + +++    +   +L++  D I ++++EG  L      S +   P E  + 
Sbjct: 134 TDLTERKRFEDELKKSEAENRLLLDSIPDSIFLLDKEGNFLDYRTPNSSILYAPAELFMG 193

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554
           K     + Q+   +  + +         Q  E          ++      I  L     +
Sbjct: 194 KNIHSIMPQDLVELTMNNIEMARQSGKMQVFEYQLP---ANGEIKHFEARIN-LCEGGDF 249

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
              + D++E K+    L  AK+ AE  +  KS+FLA +SHEIRTPL A+IG         
Sbjct: 250 LALVRDVTERKRSDEMLWKAKEEAEAAAKAKSEFLANMSHEIRTPLNAVIGL----TGLL 305

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                 P    Y   +  S + +L ++ND+LD SKI+ G M L   P  L   +   + L
Sbjct: 306 LDTDLTPEQRNYLEIVRNSSDSLLSVINDILDFSKIDGGMMELEHSPFDLRRCIESTMDL 365

Query: 675 VQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTT--- 730
           +     EK ++++    + +P  ++ D   ++Q+  N+LSNA+ FT  G  + +S     
Sbjct: 366 MVTRVAEKGLVLKVVLDDQLPTMLVGDASRLRQVLANLLSNAVKFTDKGF-VEVSVRGNA 424

Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
                E+   V DTG+GM   +L++   PF QI +S   R  GTGLGL ++K +V    G
Sbjct: 425 IPEGFELRFDVLDTGIGMPQDKLDRLFMPFSQIDSSITRRYGGTGLGLAISKRLVGMMGG 484

Query: 791 KFYIFSTPAKGTLIEIIF 808
           + +  S P  G+      
Sbjct: 485 RIWAKSNPGVGSTFTFTI 502



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 14/137 (10%), Positives = 43/137 (31%), Gaps = 5/137 (3%)

Query: 94  YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIE 153
             + ++    + +G    ++IG  + ++                +   T   +  L   +
Sbjct: 48  RFEYVNPAFARMVGRMPKELIGRSMDELIHPHDRPILIQARSRRQAGETSSYEARLIRSD 107

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
           G     P+ +   P + ++ +F G      V             K+ + +   L +    
Sbjct: 108 GC--VFPVQVTGTPRW-QDGKFFG--SIVAVTDLTERKRFEDELKKSEAENRLLLDSIPD 162

Query: 214 HSSVEKEKYDIFSQQSP 230
              +  ++ +    ++P
Sbjct: 163 SIFLLDKEGNFLDYRTP 179


>gi|332704490|ref|ZP_08424578.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332554639|gb|EGJ51683.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 842

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 120/681 (17%), Positives = 234/681 (34%), Gaps = 78/681 (11%)

Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT---- 244
              +  A  ++ ++    + E   G     +         S      +  ++ S+     
Sbjct: 24  RLQERLAEAEKSERLLKSILEYIPGGLIYAEAPDVSIRAVSRYGQQLIGRQLESIEGRTG 83

Query: 245 ------EYYAHKDDVLKTEKYPLL-----TSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293
                     H D V + E   L         E    E+      +  +     + G ++
Sbjct: 84  PEIQESWKLLHPDGVTQAEHEELPLVRAVAKGEDVREEEWVLFRPDGEKIPILIHAGPVR 143

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLF--------YAN 345
           +        L+           +E    + +      +       G           + +
Sbjct: 144 DEQGTIIGGLASLIGMEKRRQIEERLRESEKRFR---LAISAARMGAYSRNLQTGQDHWS 200

Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405
           P FL +      + +    G+   +         A   V   R+           H I  
Sbjct: 201 PEFLAIYGLGPDEPLPFLDGIPAAVHPEDRPRVLAEARVFFGRTVEQEFCNE---HRIVR 257

Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM-------EIEVMQLCSIL 458
           +      +  +   + +   +     G+  +  + +  +  +       E +  +L   L
Sbjct: 258 SNGEIRWVMILGKMEFDLAGKPHVIYGLGMDVTERKQAEEALQQAKEKAEQQANELREAL 317

Query: 459 --------------EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
                         E    G+ + +  G     + +  KL    +E+     +T  L   
Sbjct: 318 QRLSESEQRYRVMGETIPYGVWMCDPNGKATYVSPSFCKLLDMTLEEQNDFGWTHRLVPE 377

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHD 560
               M                E       K+  + ++      +   +     +     D
Sbjct: 378 DVDPMMDKWIGCCCTGKPW--EHEHRIVAKDGGIRTVLSKGLPIRHENGKIACWVGVNLD 435

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I+E K  +  L  AK+ AE  +  KS+FLA +SHEIRTP+  IIG +E+   Q       
Sbjct: 436 ITERKMMEEDLRQAKQAAEAANQAKSEFLASMSHEIRTPMNGIIGLTELALMQE----PK 491

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
            +  +Y   + +S N +LDI+ND+LD+SKIE+G++ L      L + +      +++ A 
Sbjct: 492 AKIRDYLQMVKQSANSLLDIINDILDLSKIEAGRVELEHADFDLRDMLDSLFETMRIGAE 551

Query: 681 EKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN----- 734
            K +   T+    +P  I  D   ++QI +N++ NAI +T +G Q+ +            
Sbjct: 552 RKGLSFSTAIDPGVPDWIKGDEGRLRQIFVNLIGNAIKYTEAG-QVSVRVGVEDGRGAQD 610

Query: 735 -------EEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
                  E V L   V+DTG G+   +L +  +PF     ++  + +GTGLGL + K +V
Sbjct: 611 AGGRNTPERVCLVASVKDTGGGIPKDKLGRIFEPFDT--GARSAKYDGTGLGLAITKRLV 668

Query: 786 DANMGKFYIFSTPAKGTLIEI 806
           +   G+  + S   +G+    
Sbjct: 669 ELMGGRITVQSELGRGSTFSF 689



 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/195 (10%), Positives = 51/195 (26%), Gaps = 8/195 (4%)

Query: 33  GFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRF-TWNIDA 91
           G +  + K+        ++      N+  +       SE+   +  +  T+ +  W  D 
Sbjct: 286 GMDVTERKQAEEALQQAKEKAEQQANE--LREALQRLSESEQRYRVMGETIPYGVWMCDP 343

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQNTWYGKTTLW 150
           +G    +S    K +     +              +DP              W  +  + 
Sbjct: 344 NGKATYVSPSFCKLLDMTLEEQNDFGWTHRLVPEDVDPMMDKWIGCCCTGKPWEHEHRIV 403

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
             +G      +    LPI   N +       G+              ++  +     ++ 
Sbjct: 404 AKDGGIR--TVLSKGLPIRHENGKI--ACWVGVNLDITERKMMEEDLRQAKQAAEAANQA 459

Query: 211 KKGHSSVEKEKYDIF 225
           K    +    +    
Sbjct: 460 KSEFLASMSHEIRTP 474


>gi|126656186|ref|ZP_01727570.1| Signal Transduction Histidine Kinase (STHK) with CheB and CheR
            activity [Cyanothece sp. CCY0110]
 gi|126622466|gb|EAZ93172.1| Signal Transduction Histidine Kinase (STHK) with CheB and CheR
            activity [Cyanothece sp. CCY0110]
          Length = 1191

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 130/684 (19%), Positives = 250/684 (36%), Gaps = 57/684 (8%)

Query: 165  ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDI 224
            AL    R+ E   F G  I   +   N    +G   +     L +       VE      
Sbjct: 392  ALHRARRDCEPVLFTGLHIDREDEELNVSLRVG--CNPNNPALADYLIVILEVEGISPKS 449

Query: 225  FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYT 284
             +            +++ +        + L+     L T+ E      E+    N     
Sbjct: 450  GAALRFDVDSEAAQQITEMEYELQQTRENLQITIEELETANEEQQATNEEMLAANEELQG 509

Query: 285  KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFY 343
              +   ++         Y  +  + +      +  +     +    I   F+    N+  
Sbjct: 510  TNEELQSVNEEL-----YTVNSEYQNKINELTQLNDDMNNLLRSTNIGVVFLDRQLNIRK 564

Query: 344  ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403
              P+       K  D       L++ LD P L        + L ++      A  R   I
Sbjct: 565  FTPAATRAINLKPADIGRPLADLTSKLDCPDL--------LTLLQTVLETENAEQREVNI 616

Query: 404  QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
                   L           +   +        +  +    + ++      L ++   +  
Sbjct: 617  PSTDGTLLMQIN---PYWREDDTSDGIVLSFIDIDELEKVQHQLHQANAILENLYATSPV 673

Query: 464  GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
            G+ + + E   +  N+++ + +G  VED L K  +  +       +   L ++L  +   
Sbjct: 674  GLCLYDHELKFVRINQSLVESYGLEVEDALGKT-SSEVLPELGRQIEPLLRQVLETNAP- 731

Query: 524  TLEKITLGSTK-----EEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578
             +     G T      E+   +    +  L         M DI+E    ++ L  ++   
Sbjct: 732  IISIELRGRTPADPAAEKVWSASYYPVDVLEDQCGVGGVMIDITERTHAEDSLRESEAQL 791

Query: 579  EK-----------------ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
             +                  +  KS+FLA +SHEIRTP+ +I GFS+++   +     NP
Sbjct: 792  IQQKEALEDAIAIAQAADFANQAKSEFLANMSHEIRTPMNSICGFSDLLLRSQL----NP 847

Query: 622  RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
            +   +   +  + N +L ++ND+LD SKIE+ K++L+    +L+  + E        A  
Sbjct: 848  KQRHWIEILQANSNRLLALINDILDFSKIEARKLHLNPREFNLETLLQEVRFSFTPQAER 907

Query: 682  KRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV--- 737
            K + +      ++PR ++ D   ++Q+  N++SNAI FT +G ++ I+ +     EV   
Sbjct: 908  KGLQLTHEIEPDVPRHLIGDDFRLQQVLSNLVSNAIKFTETG-EVKIAVSQQGETEVNGG 966

Query: 738  -----ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
                    V+DTG+G++    E   +PF Q+ +S   R  GTGLGL + + +V    G+ 
Sbjct: 967  IIVPLRFSVQDTGIGISPDAQENLFQPFTQVDSSATRRYGGTGLGLTICRRIVQLMGGEI 1026

Query: 793  YIFSTPAKGTLIEIIFPLYDTSHP 816
            ++ S    G+      PL    HP
Sbjct: 1027 HVDSEVDVGSTFWFTVPLQQPDHP 1050



 Score = 46.2 bits (108), Expect = 0.026,   Method: Composition-based stats.
 Identities = 29/261 (11%), Positives = 61/261 (23%), Gaps = 11/261 (4%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT- 148
           D       I++ L ++ G      +G    +V   L       +  +L+           
Sbjct: 679 DHELKFVRINQSLVESYGLEVEDALGKTSSEVLPELGRQIEPLLRQVLETNAPIISIELR 738

Query: 149 -LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
              P +     V    +  P+     +  G  G  I              +  + +    
Sbjct: 739 GRTPADPAAEKVW-SASYYPV-DVLEDQCGVGGVMI--DITERTHAEDSLRESEAQLIQQ 794

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
            E  +   ++ +        +S           + +       D +L+++  P       
Sbjct: 795 KEALEDAIAIAQAADFANQAKSEFLANMSHEIRTPMNSICGFSDLLLRSQLNPKQRHWIE 854

Query: 268 SLPEQEDFHTINLNQYTK----KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
            L    +     +N        +     L          L             +G  LT 
Sbjct: 855 ILQANSNRLLALINDILDFSKIEARKLHLNPREFNLETLLQEVRFSFTPQAERKGLQLTH 914

Query: 324 ETVDKCPIPFFVYSHGNLFYA 344
           E     P    +     L   
Sbjct: 915 EIEPDVPRH-LIGDDFRLQQV 934


>gi|94264236|ref|ZP_01288031.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like:CHASE
           [delta proteobacterium MLMS-1]
 gi|93455347|gb|EAT05551.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like:CHASE
           [delta proteobacterium MLMS-1]
          Length = 794

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 124/690 (17%), Positives = 251/690 (36%), Gaps = 25/690 (3%)

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRN-REFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
              ++P EG    + +DL   P+     R     R   I     +     AL  R+    
Sbjct: 109 IRYVYPREGNEEALGMDLYNHPVQGAATRRMMEARTMVIAGPVTLVQGGEALIVRIPIFH 168

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV-SSLTEYYAHKDDVLKTEKYPLLT 263
            +  + ++ +  +     D+             +++  +L  +             P L 
Sbjct: 169 ENQADGRRAYWGMTSIPVDLDGFYQRVGLQETASRLQIALRGHDGLGAAGEVFFGDPKLF 228

Query: 264 SEESSLPEQEDFHTINLNQ---------YTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
           + E  +   +                     ++    L          L      +    
Sbjct: 229 AAEPVIQRVDLLAGTWQLAGKPPGGWQVPWSQRLPWLLGGLLGALLVGLVGGKLTAQRER 288

Query: 315 FDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
               E    E V+        +   G + + N     L  Y     +     + +++   
Sbjct: 289 LRHSEAGYRELVENVNSIVLRWRADGTITFINEYGARLFGYTPRG-LVGRSVVGSIVPEN 347

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
           + S  +  K +                  I  +    L +++      +     +    I
Sbjct: 348 ESSGRDLAKMMADVAQHPEKYH-DNENENICRDGSR-LWISWNNRVVYDATGAVVEILSI 405

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE--GIILSTNRAVSKLFGYPVED 491
             +    R  +  ++    +  +++      +     E    +   +  +  + GYP  +
Sbjct: 406 GRDHTRRRHIELALKNSERRFRTMVGHIYGAVYRCLPESPWAVEFVSEPIGDITGYPARE 465

Query: 492 IL--RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
            +  R+     +       + H +++ ++      LE   + + + E+ +  R       
Sbjct: 466 FMEGRRNLEEIIHPAERDRIAHEVSQAVAEGRPYVLEYRIINNERVERWVHERGQAVVDE 525

Query: 550 FSSCYS-LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
               +    + DI+  K+E+ +L  A+  A+  +  KS+FLA +SHE+RTPL AIIG+SE
Sbjct: 526 DGVTWLDGVIFDITNRKREERELVEARDAAKAANQAKSNFLANMSHELRTPLNAIIGYSE 585

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
           ++  +     G     E    I  +   +L ++N++LD SK ESG+++L  E   LDE +
Sbjct: 586 ILLEEA-EEHGLEGCAEDIQRIREAARHLLGLINEVLDFSKTESGRISLTMEECDLDELM 644

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
           +  + +++    E+   +       +  I  D   ++QI  N+LSNA  FT  G  I + 
Sbjct: 645 AAVVDIIRPLLPERENRLLVETEEELGTIRTDGTRLRQILYNLLSNAAKFTEKGF-ITLR 703

Query: 729 TTH---TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
           T        E V + ++DTG+G++  + +K  KPF Q  +S   R  GTGLGL +++   
Sbjct: 704 TRRLMRDGGEWVEIDIQDTGIGISEEQQKKLFKPFTQADSSISRRFGGTGLGLAISRYFC 763

Query: 786 DANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
               G   + STP +G+   +  P+   + 
Sbjct: 764 RMMGGDIALVSTPGQGSTFTVSLPVSPDNQ 793



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/379 (10%), Positives = 93/379 (24%), Gaps = 23/379 (6%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL-----KRQN 141
           W   A G +  I+E   +  G     ++G  +       +      +  ++       + 
Sbjct: 310 WR--ADGTITFINEYGARLFGYTPRGLVGRSVVGSIVPENESSGRDLAKMMADVAQHPEK 367

Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
               +      +G+   + I      +Y            G    +          K  +
Sbjct: 368 YHDNENENICRDGS--RLWISWNNRVVYDATGAVVEILSIG--RDHTRRRHIELALKNSE 423

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
           ++F  +     G              +SP     +   +  +T Y A +    +     +
Sbjct: 424 RRFRTMVGHIYGAVY-------RCLPESPWAVEFVSEPIGDITGYPAREFMEGRRNLEEI 476

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
           +   E      E    +          +  + N   E + +   +              +
Sbjct: 477 IHPAERDRIAHEVSQAV-AEGRPYVLEYRIINNERVERWVHERGQAVVDEDGVTWLDGVI 535

Query: 322 TPETVDKCPIPFFVYSHGNLFYANPS---FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
              T  K      V +      AN +   FL    ++    +    G S +L        
Sbjct: 536 FDITNRKREERELVEARDAAKAANQAKSNFLANMSHELRTPLNAIIGYSEILLEEAEEHG 595

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
                  + R           ++ +  +   + +       +     E M         +
Sbjct: 596 LEGCAEDIQRIREAARHLLGLINEV-LDFSKTESGRISLTMEECDLDELMAAVVDIIRPL 654

Query: 439 DTRINKRKMEIEVMQLCSI 457
                 R +     +L +I
Sbjct: 655 LPERENRLLVETEEELGTI 673


>gi|114564655|ref|YP_752169.1| multi-sensor hybrid histidine kinase [Shewanella frigidimarina
           NCIMB 400]
 gi|114335948|gb|ABI73330.1| multi-sensor hybrid histidine kinase [Shewanella frigidimarina
           NCIMB 400]
          Length = 1236

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 114/594 (19%), Positives = 204/594 (34%), Gaps = 46/594 (7%)

Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291
           P  R+   + + ++      + +     P          E             +  +   
Sbjct: 381 PASRLLTHLEACSQTPIRPPEKITRGWEPWFALVSRIFEEN-----------RQYTHHLA 429

Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLL 350
            QN   ++      +     +   +    L    +D  P    F    G     N S   
Sbjct: 430 EQNKRLDNLVARRTQRLRETTERREREFALLRSLIDSIPEAIVFKDKEGKYLGCNKSAER 489

Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
           +  Y   + I +        +          K +    S R     +             
Sbjct: 490 MLGYTENEIIGLTSSEVVSPEQGLRIGEEDNKVLTQQHSLRYQERVNIE--------GKP 541

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA--II 468
           + +        N+  + +    +  +         ++ +   +    ++A  DG+    I
Sbjct: 542 VLLDTFKLPFYNRRGDLLGLISVWRDITREYEAAEQLRMSEQRYHLAMDAVEDGLWDWYI 601

Query: 469 NREGIILSTNRAVSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
           + E II   N A   + GY   +     +        +    +  Y  + +   +  T E
Sbjct: 602 DSEQII--CNPAFYSMLGYQANEFPPLLESIDELYHPDDRERVQEYRAQYVRDPV-GTYE 658

Query: 527 KITLGSTKEEKLLSL-----RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE 581
                  K      +      +   +   S     T  DI+  K  +  L  AK+ AE  
Sbjct: 659 IEFRMRGKNGLYFWVLSRGRAVEFSEDGCSKRMLGTHKDITRQKSNEVALLEAKQDAELA 718

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
           + +KS+FLA +SHEIRTP+ AIIG  ++ +          +  +Y N    S   +L I+
Sbjct: 719 NMYKSEFLANMSHEIRTPMNAIIGMLQLAQRTSLTV----QQQDYLNKAGFSAQSLLRII 774

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LAD 700
           ND+LD SKIE+GK+ L      LD+ +   I +  + A EK + +          I   D
Sbjct: 775 NDILDFSKIEAGKLELERVAFPLDKVLDHVIDINAIKAQEKGVELLLYAPVTAGLILYGD 834

Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE------VILRVRDTGVGMTNYELE 754
              + Q+ +N+LSNA+ FT +G    +        E      +   VRDTG+G++  +  
Sbjct: 835 PLRLGQVIVNLLSNAVKFTQTG---EVELGCEDVGERDDRITMKFWVRDTGIGISKDQQA 891

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
                F Q   S   +  GTGLGL ++K +V    G   + S    G++     
Sbjct: 892 MLFDAFSQADGSTTRKYGGTGLGLSISKHLVSMMGGTMQVESELGSGSIFSFTI 945



 Score = 51.2 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/262 (8%), Positives = 70/262 (26%), Gaps = 15/262 (5%)

Query: 79  IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL-HIDPNNHIGDLL 137
                   +  D  G     ++   + +G    ++IG+   +V      +        +L
Sbjct: 465 DSIPEAIVFK-DKEGKYLGCNKSAERMLGYTENEIIGLTSSEVVSPEQGLRIGEEDNKVL 523

Query: 138 KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG 197
            +Q++   +     +      V +D   LP Y+R  +  G     +      + +     
Sbjct: 524 TQQHSLRYQE---RVNIEGKPVLLDTFKLPFYNRRGDLLGL--ISVWRDITREYEAAEQL 578

Query: 198 KRLDKKFSHLHEIKKGHSSVE--KEKYDIFSQQSPPPHLRMKNKVSSLTEYY-----AHK 250
           +  ++++    +  +          +  I +           N+   L E          
Sbjct: 579 RMSEQRYHLAMDAVEDGLWDWYIDSEQIICNPAFYSMLGYQANEFPPLLESIDELYHPDD 638

Query: 251 DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ-NNSKESFEYLSHRNHP 309
            + ++  +   +     +   +      N   +        ++ +    S   L      
Sbjct: 639 RERVQEYRAQYVRDPVGTYEIEFRMRGKNGLYFWVLSRGRAVEFSEDGCSKRMLGTHKDI 698

Query: 310 SLSAYFDEGENLTPETVDKCPI 331
           +     +       +  +   +
Sbjct: 699 TRQKSNEVALLEAKQDAELANM 720


>gi|163942321|ref|YP_001647205.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           weihenstephanensis KBAB4]
 gi|163864518|gb|ABY45577.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           weihenstephanensis KBAB4]
          Length = 587

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 93/388 (23%), Positives = 181/388 (46%), Gaps = 26/388 (6%)

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           +           +   + +  +E E    +L +++E    G+ +I+  G I   NR+  +
Sbjct: 216 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 275

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542
            F    E+ L + +           +   + EI   +++   + +  LG  ++   +   
Sbjct: 276 TFHVTDEEYLDRLYYESFHHT---EIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 332

Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
            II          L  HDI+E K+ +                + DFLA VSHE++TP+T+
Sbjct: 333 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 378

Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           I GFSE + +   G + N ++ E + + I +    +  ++ DLLD+SKIE     L+   
Sbjct: 379 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGT 435

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           V + E + +   ++   A EK I ++ +    +  ++ D   +KQI +N+++NAI +TP+
Sbjct: 436 VDMKELLEDIHMVLDNKAGEKEISLQVNALKRV-SVIGDPGRLKQIFINLINNAIVYTPA 494

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           GG + +           ++V DTG+G++  E+ +  + F ++  ++     GTGLGL + 
Sbjct: 495 GGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIV 553

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           K +V+A+ G   + S   +GT   ++ P
Sbjct: 554 KHLVEAHQGTITVDSEVGEGTTFTVVLP 581


>gi|189423636|ref|YP_001950813.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189419895|gb|ACD94293.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 947

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 111/619 (17%), Positives = 227/619 (36%), Gaps = 26/619 (4%)

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
           +             +V +    +   +      R  +++ +            K  +   
Sbjct: 192 RDGLLTASADARILAVNRAYCTLLGYEEQELLGRSIHEIEANETMEEVDAHTRKIVEQGF 251

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
                    +      + L+     +    L      +   L  R        +     L
Sbjct: 252 DRFISRHRCKDGTTRDLELSISYIAEVGQFLTIARDVTERLLLERQLLDSEQRYQAFTEL 311

Query: 322 TPETVDKCPIPFFVYSHG---NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
           + +            + G    + +    F  +T Y + + + +   L   L  P   + 
Sbjct: 312 SSDF-----CHVCSRTAGGPYRVQWIGGQFERITGYGNDELLALGCWLP--LVHPDDRER 364

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
            A   + L   D       +    ++ +             +    P+ +   G   +  
Sbjct: 365 VAAGLLRLSAGDE----LRSEFRLVRKDLVVRWISEHSRCVQDPVNPDLLRLYGSARDIT 420

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILRKPF 497
               N   ++       +I  AT+D I I++ + G+I+  N+   +LFG P  D++    
Sbjct: 421 TVHDNTLALQTAENAYRTIFNATNDVIFIMDAQQGMIIDCNKQAVQLFGRPRVDLIGSNP 480

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLE-KITLGSTKEEKLLS--LRIIIKKLPFSSCY 554
                 + P          +   + +  +    L +  +       + +   ++      
Sbjct: 481 VQLSPPDHPDFGFEQAAAHIRSAIEEGAQLFEWLCARPDGSTFWAEVSLRAAEINGRQRL 540

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
              + DISE KQ   +L  A+  A + ++ K++FLA +SHE+RTPL  I+G S++++   
Sbjct: 541 LAVVRDISERKQSMQELQQARDAALQATTAKNEFLANMSHEVRTPLNGIMGLSQLLRTTS 600

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                      Y + +D S   +L ++ND+LDIS+IE+G + +     S  + + E   +
Sbjct: 601 L----TEEQAGYMDMLDSSARNLLVLINDILDISRIEAGSLTIRQTAFSPAKLLREVAGM 656

Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHT 732
            +  A EK I +     + +P  ++ D   ++Q+ +N++ NAI FT  GG  + +     
Sbjct: 657 YEKAAAEKGIGLDILPCDELPAALIGDPLRLRQVLINLVGNAIKFTSHGGVTLRVDCLEE 716

Query: 733 SNEEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
           S   +     V D+G+GM+   L+K   PF Q   S      G+GLGL + + + +   G
Sbjct: 717 SATGIRLGFEVSDSGIGMSAETLQKIFHPFTQADASTSRVHGGSGLGLAICRRLSELMGG 776

Query: 791 KFYIFSTPAKGTLIEIIFP 809
                S+  +G+   +  P
Sbjct: 777 SIRAESSLGQGSRFIVELP 795



 Score = 85.8 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/377 (9%), Positives = 93/377 (24%), Gaps = 29/377 (7%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150
           A   +  ++      +G    +++G  + ++     ++  +     +  Q      +   
Sbjct: 200 ADARILAVNRAYCTLLGYEEQELLGRSIHEIEANETMEEVDAHTRKIVEQGFDRFISRHR 259

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
             +GT   + + ++ +       +F       I                 ++++    E+
Sbjct: 260 CKDGTTRDLELSISYIA---EVGQF-----LTIARDVTERLLLERQLLDSEQRYQAFTEL 311

Query: 211 KKGH----SSVEKEKYDI----FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
                   S      Y +       +    +   +           H DD  +     L 
Sbjct: 312 SSDFCHVCSRTAGGPYRVQWIGGQFERITGYGNDELLALGCWLPLVHPDDRERVAAGLLR 371

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE-----SFEYLSHRNHPSLSAYFDE 317
            S    L  +      +L      ++   +Q+                      +     
Sbjct: 372 LSAGDELRSEFRLVRKDLVVRWISEHSRCVQDPVNPDLLRLYGSARDITTVHDNTLALQT 431

Query: 318 GENLTPETVDKCPIPFFVYSH--GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
            EN      +      F+     G +   N   + L     VD I         L  P  
Sbjct: 432 AENAYRTIFNATNDVIFIMDAQQGMIIDCNKQAVQLFGRPRVDLIGSNPVQ---LSPPDH 488

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
            D    +     RS     A        + +     A   +   + N          +  
Sbjct: 489 PDFGFEQAAAHIRSAIEEGAQLFEWLCARPDGSTFWAEVSLRAAEING---RQRLLAVVR 545

Query: 436 EDVDTRINKRKMEIEVM 452
           +  + + + ++++    
Sbjct: 546 DISERKQSMQELQQARD 562



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/231 (16%), Positives = 80/231 (34%), Gaps = 7/231 (3%)

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
           E   GL+    A   +D      ++        +              N L M   P  +
Sbjct: 89  EHVVGLAPRYFAAGAADLFPKDELLRQLQVECYLGVPLYSSR-HEPLGNLLLMDSKPLPE 147

Query: 421 ANQFPENMPQNGIEPEDV---DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
           A   P                +    ++++ I+ + L  IL  + DG+   + +  IL+ 
Sbjct: 148 ALVPPALKLMELFALRTAGEIERAEREQQLAIQDIHLGIILNNSRDGLLTASADARILAV 207

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
           NRA   L GY  +++L +         T   ++ +  +I+     + + +      K+  
Sbjct: 208 NRAYCTLLGYEEQELLGRSIHEIEANETMEEVDAHTRKIVEQGFDRFISR---HRCKDGT 264

Query: 538 LLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
              L + I  +     +     D++E    + +L  +++  +  +   SDF
Sbjct: 265 TRDLELSISYIAEVGQFLTIARDVTERLLLERQLLDSEQRYQAFTELSSDF 315


>gi|87309080|ref|ZP_01091217.1| sensory box sensor histidine kinase/response regulator
           [Blastopirellula marina DSM 3645]
 gi|87288071|gb|EAQ79968.1| sensory box sensor histidine kinase/response regulator
           [Blastopirellula marina DSM 3645]
          Length = 1013

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 125/605 (20%), Positives = 238/605 (39%), Gaps = 29/605 (4%)

Query: 220 EKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTIN 279
             Y       P   +   + +     +      +   + +  L      L E        
Sbjct: 136 AAYRDIRVLIPATLIVAADHLIRGLLWPESIFGIAAADNWRWLEHSAWVLFEDVFLILTI 195

Query: 280 LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSH 338
                +           + + E L+           +  E     T +   +    +   
Sbjct: 196 RQSLAEVHALAMKTTEGELAVERLAIAKR-----LAEHNEAQFRATFEYAAVGVAHIGFD 250

Query: 339 GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398
           G     N     +  Y   + ++            K  D+  ++  +    +     A  
Sbjct: 251 GYWLRTNKKICEMLDYSEQE-LQRLTFADVTCPEDKEIDDRHLQDFL----NGEIEEACF 305

Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME---IEVMQLC 455
               +  N E   A   I   + +          +  +  + R  +  +E    E+ +L 
Sbjct: 306 EKRYVNRNGEIIWARLTISVIRDDA-----YFIVVIEDIREERQAREDLEKSNREIHKLS 360

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE-QNTPSVMNHYLT 514
            +       + I ++ G I   N A ++L GY + +I+ +     L+   T      Y+ 
Sbjct: 361 LVAAKARQSVIIADKFGRIEWVNDAFTQLTGYALPEIIGQKPGTLLQGPETDPSTAAYIG 420

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLS 572
           E L    R ++E +    + E+  ++L I            +  T  +++  K+ + +L 
Sbjct: 421 ERLRSRERVSVEIVNYSKSSEKYWIALEIEPVFDEQHRLIQFIATQTNVTHRKKHEAELR 480

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
            AK+ AE  ++ KS+FLA +SHEIRTPL  ++GF++++   R       +  EY   I  
Sbjct: 481 RAKETAEAANAAKSEFLANMSHEIRTPLNGLLGFTDLLL--RGAANDPQKRDEYLQIIRT 538

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
           SG  +LD++NDLLD+SKIE+GK+     P      V+E +S++++ A+EK + +   ++ 
Sbjct: 539 SGRNLLDVINDLLDLSKIEAGKLETESLPCDPQAVVAEVVSILRVKADEKALRLTCDWSG 598

Query: 693 NIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN-EEVILRVRDTGVGMTN 750
            +P  I+ D   ++Q+  N++ NAI FT  G  + I     +  +++   +RDTG+G+  
Sbjct: 599 EVPPQIVTDSVRLRQLLTNLIGNAIKFTQFGS-VSIDAGWHAPLQQLTFVIRDTGIGIPE 657

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF-- 808
            +L+    PF Q   +   R  GTGLGL + + +     G   + S    G+   +    
Sbjct: 658 EKLDLIFDPFTQADATTTRRFGGTGLGLAICRRIARLLGGDVSVESEIGAGSTFTVTIAA 717

Query: 809 PLYDT 813
           PLYD 
Sbjct: 718 PLYDA 722



 Score = 54.6 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 27/229 (11%), Positives = 63/229 (27%), Gaps = 13/229 (5%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNTWYGKT 147
           D  G ++ +++   +  G    ++IG +   +      DP+    IG+ L+ +     + 
Sbjct: 374 DKFGRIEWVNDAFTQLTGYALPEIIGQKPGTLLQGPETDPSTAAYIGERLRSRERVSVEI 433

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
             +    ++    I L   P++        F                A  +R  +     
Sbjct: 434 VNYSK--SSEKYWIALEIEPVFDEQHRLIQF--IATQTNVTHRKKHEAELRRAKETAEAA 489

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
           +  K    +    +          P   +      L    A+           + TS  +
Sbjct: 490 NAAKSEFLANMSHEIR-------TPLNGLLGFTDLLLRGAANDPQKRDEYLQIIRTSGRN 542

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
            L    D   ++  +  K +      +      E +S     +      
Sbjct: 543 LLDVINDLLDLSKIEAGKLETESLPCDPQAVVAEVVSILRVKADEKALR 591



 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/366 (8%), Positives = 102/366 (27%), Gaps = 30/366 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTWY-GK 146
           I   GY    ++++ + +     ++  +   DV+     + ++  + D L  +      +
Sbjct: 247 IGFDGYWLRTNKKICEMLDYSEQELQRLTFADVTCPEDKEIDDRHLQDFLNGEIEEACFE 306

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK---K 203
                  G  ++  + ++   I              ++   R +   R   ++ ++   K
Sbjct: 307 KRYVNRNGEIIWARLTISV--IRDDAYFIV------VIEDIREERQAREDLEKSNREIHK 358

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL---RMKNKVSSLTEYYAHKDDVLKTEKYP 260
            S +    +    +  +   I         L    +   +           +   +    
Sbjct: 359 LSLVAAKARQSVIIADKFGRIEWVNDAFTQLTGYALPEIIGQKPGTLLQGPETDPSTAAY 418

Query: 261 LLTSE--ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
           +         +  +   ++ +  +Y        + +      ++++ + + +     +  
Sbjct: 419 IGERLRSRERVSVEIVNYSKSSEKYWIALEIEPVFDEQHRLIQFIATQTNVTHRKKHEAE 478

Query: 319 ENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
                ET +        +       AN S  + T    +      G    LL        
Sbjct: 479 LRRAKETAEAANAAKSEF------LANMSHEIRTPLNGL-----LGFTDLLLRGAANDPQ 527

Query: 379 NAIKPVMLYRSDRT-CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
              + + + R+     +     L  +       L    +P +      E +    ++ ++
Sbjct: 528 KRDEYLQIIRTSGRNLLDVINDLLDLSKIEAGKLETESLPCDPQAVVAEVVSILRVKADE 587

Query: 438 VDTRIN 443
              R+ 
Sbjct: 588 KALRLT 593


>gi|83309666|ref|YP_419930.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82944507|dbj|BAE49371.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 755

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 131/589 (22%), Positives = 246/589 (41%), Gaps = 23/589 (3%)

Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291
           P++++++   +L   Y   D +             ++         +             
Sbjct: 167 PYVQLEDGRVALPMAYPILDWLGTPRGVV-----ATARSLDHLAKAVAPPILPDGARLLV 221

Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANP--SFL 349
           L+++        +            E                 +    ++F   P     
Sbjct: 222 LKSDGTVLARVPALSGDAPAITPVPELREAAARGRGGSFTAIAITGETSVFGVAPLGRMA 281

Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
             T       +E+ GG         ++         +       +  S+R    Q     
Sbjct: 282 PETMVAVTMPVEMLGGSERQFLRMAVTAFGIAGSGAVL-----LLWYSSRRLLFQPLGRL 336

Query: 410 SLAMTFIPFEK-ANQFPENMPQNGIEPEDVDTR-----INKRKMEIEVMQLCSILEATSD 463
           + AM  +     A +    + + G   +  DT        + ++     +  +  E  + 
Sbjct: 337 AGAMRRVRAGDMAARAGGGIGEVGEMGDTFDTMVGALNEREARLTESEDRFRATFEQAAV 396

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
           G+     +   +  N   +++ G   ++++ +  + F   +   +    +  I+    R+
Sbjct: 397 GMCHTTLDRRFIRINSRFAEMLGCAPQELIGRSASDFTHPDDRKLGLDGIDHII-QGTRE 455

Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEK 580
           +         K+  ++   + +  L              DIS  K+ +++L  AK+ AE 
Sbjct: 456 SNSIEKRYLRKDGTIVWANLTVSALRRDGQVEYIIGVAEDISWRKRAEDELRAAKEQAES 515

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            S  KSDFLA +SHE+RTPL AIIGF+E + +Q  GP+   RY EYA  I  SG  +L I
Sbjct: 516 ASRAKSDFLAGMSHELRTPLNAIIGFAETMYSQVLGPMP-ERYREYAGDISASGRHLLGI 574

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILAD 700
           + D+LD++KIE+G+M L   P+ +   V  A+ L++       + + +     +P+++AD
Sbjct: 575 ITDILDLAKIEAGRMELDDRPMEIAPVVDVALRLLRDRGAAAGLNLISDLPPGLPQVMAD 634

Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760
            R ++Q+ +N+L+NA+ FTP GG++ +S + T +  + L V DTG+GMT  E  + ++PF
Sbjct: 635 ERRIRQVVINLLANAVKFTPFGGRVTVSASLTPDGGLELHVSDTGIGMTEEEAAQVIEPF 694

Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            Q+      R EGTGLGLP+  A+++ + G   I S P  GT + + FP
Sbjct: 695 VQVDARIARRHEGTGLGLPMVAAIMEMHGGAIAIASQPDAGTRVTVTFP 743



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/359 (9%), Positives = 82/359 (22%), Gaps = 21/359 (5%)

Query: 94  YLKEISEELPKTIGNYAFKMIGMRLCDVSDILH----IDPNNHIGDLLKRQNTWYGKTTL 149
               I+    + +G    ++IG    D +        +D  +HI      + +   +   
Sbjct: 406 RFIRINSRFAEMLGCAPQELIGRSASDFTHPDDRKLGLDGIDHIIQ--GTRESNSIEKRY 463

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
              +GT ++  + ++AL    R+ +       G+              +   ++      
Sbjct: 464 LRKDGTIVWANLTVSAL---RRDGQVEYI--IGVAEDISWRKRAEDELRAAKEQAESASR 518

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK-DDVLKTEKYPLLTSEESS 268
            K    +    +              M ++V         +    +      LL      
Sbjct: 519 AKSDFLAGMSHELRTPLNAIIGFAETMYSQVLGPMPERYREYAGDISASGRHLLGIITDI 578

Query: 269 L------PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
           L        + +     +           L  +   +       + P         E   
Sbjct: 579 LDLAKIEAGRMELDDRPMEIAPVVDVALRLLRDRGAAAGLNLISDLPPGLPQVMADERRI 638

Query: 323 PETV-DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
            + V +           G     + S       +        G      +A ++ +    
Sbjct: 639 RQVVINLLANAVKFTPFGGRVTVSASLTPDGGLELHVSDTGIGMTEE--EAAQVIEPFVQ 696

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
               + R           +  I      ++A+   P           P+          
Sbjct: 697 VDARIARRHEGTGLGLPMVAAIMEMHGGAIAIASQPDAGTRVTVTFPPRRIFAVTATGR 755


>gi|307307214|ref|ZP_07586951.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175]
 gi|306910269|gb|EFN40701.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175]
          Length = 1139

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 114/536 (21%), Positives = 219/536 (40%), Gaps = 53/536 (9%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
            + +   +         +D        +   G +   NP+   L  Y   + I     + 
Sbjct: 240 DARTKALEAANIRLNTILDSAVDGFVIINDKGTITDINPAISRLFGYAHNELIGQNVAIF 299

Query: 368 TLLDAPKLSDN--------------NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
              +     D+                 + +M  R D      +  +  ++ + +     
Sbjct: 300 LPFEMRSSHDSFIHQYLETGVTQIIGTSRELMAQRKDGQLFPIALSVSLMKIDNK----- 354

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
                         +   G+  +  D +  +         L + L A+ D +  I+ +G 
Sbjct: 355 --------------VMFIGLVKDLSDVKRKEVAAAKTESVLLATLAASLDSLITIDIDGR 400

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV-MNHYLTEILSLDLRQTLEK--ITL 530
           ++  N A ++LFGY   + + +     +   +        +           + K    L
Sbjct: 401 VVEFNLAATRLFGYSRHEAIGRYLEELIIPKSQHSSHRGGMERYRQTGSGNIINKRIELL 460

Query: 531 GSTKEEKLLS--LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
            + K    +   L ++  KL     ++  + DISE K  + KL  AK+ AE  +  KS F
Sbjct: 461 ATCKAGNEIPIELEVVPIKLGNEILFTAFLRDISERKASELKLQLAKEQAELGNKVKSRF 520

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
           LA +SHEIR+PL AI+G  E++ + +     N     +AN    +G+ +L+ +ND+LD S
Sbjct: 521 LATMSHEIRSPLNAILGGVELLLHSKL----NKEQRIHANITREAGSALLNTINDILDFS 576

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQI 707
           KIE+G+M L       D+ V++ + +++  A +K + + +    N+P+ +L D + + Q+
Sbjct: 577 KIEAGQMVLESNEFEPDKLVAQVLQILEPKAYDKGLQLVSFVDRNVPQTLLGDRQRLNQV 636

Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQI 763
             N++ NAI F+ SG  I +      N++    +  RV D+G+G++     K  K F Q+
Sbjct: 637 IHNLVDNAIKFSVSG-TITVEMWIADNQQSLMQLFCRVTDSGIGISEEAQSKLFKEFSQV 695

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819
            ++     +GTGLGL + + ++    G+  + S   KG        L     PH+ 
Sbjct: 696 HDTHNTNYKGTGLGLAICRELITMMGGEIELESELDKGCCFTFYVSL----QPHEA 747



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 82/181 (45%), Gaps = 6/181 (3%)

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
           IP +  ++  +         + VD R   + +E   ++L +IL++  DG  IIN +G I 
Sbjct: 217 IPVKGKDEIAQMGKAFNNMIDKVDART--KALEAANIRLNTILDSAVDGFVIINDKGTIT 274

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGST 533
             N A+S+LFGY   +++ +   +FL     S  + ++ + L   + Q +   +  +   
Sbjct: 275 DINPAISRLFGYAHNELIGQNVAIFLPFEMRSSHDSFIHQYLETGVTQIIGTSRELMAQR 334

Query: 534 KEEKLLS--LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
           K+ +L    L + + K+     +   + D+S+ K+++   +  + +     +   D L  
Sbjct: 335 KDGQLFPIALSVSLMKIDNKVMFIGLVKDLSDVKRKEVAAAKTESVLLATLAASLDSLIT 394

Query: 592 V 592
           +
Sbjct: 395 I 395



 Score = 45.4 bits (106), Expect = 0.036,   Method: Composition-based stats.
 Identities = 33/254 (12%), Positives = 70/254 (27%), Gaps = 23/254 (9%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI----DPNNHIGDLLKRQNTWY 144
           ID  G + E +    +  G    + IG  L ++                       N   
Sbjct: 395 IDIDGRVVEFNLAATRLFGYSRHEAIGRYLEELIIPKSQHSSHRGGMERYRQTGSGNIIN 454

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            +  L         +PI+L  +PI  +      F  F  +             +   ++ 
Sbjct: 455 KRIELLATCKAGNEIPIELEVVPI--KLGNEILFTAF--LRDISERKASELKLQLAKEQA 510

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE-KYPLLT 263
              +++K    +    +          P   +   V  L     +K+  +         +
Sbjct: 511 ELGNKVKSRFLATMSHEIRS-------PLNAILGGVELLLHSKLNKEQRIHANITREAGS 563

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
           +  +++ +  DF  I   Q         L++N  E  + ++          +D+G  L  
Sbjct: 564 ALLNTINDILDFSKIEAGQMV-------LESNEFEPDKLVAQVLQILEPKAYDKGLQLVS 616

Query: 324 ETVDKCPIPFFVYS 337
                 P       
Sbjct: 617 FVDRNVPQTLLGDR 630


>gi|304412838|ref|ZP_07394438.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183]
 gi|304348801|gb|EFM13219.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183]
          Length = 964

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 114/536 (21%), Positives = 219/536 (40%), Gaps = 53/536 (9%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
            + +   +         +D        +   G +   NP+   L  Y   + I     + 
Sbjct: 65  DARTKALEAANIRLNTILDSAVDGFVIINDKGTITDINPAISRLFGYAHNELIGQNVAIF 124

Query: 368 TLLDAPKLSDN--------------NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
              +     D+                 + +M  R D      +  +  ++ + +     
Sbjct: 125 LPFEMRSSHDSFIHQYLETGVTQIIGTSRELMAQRKDGQLFPIALSVSLMKIDNK----- 179

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
                         +   G+  +  D +  +         L + L A+ D +  I+ +G 
Sbjct: 180 --------------VMFIGLVKDLSDVKRKEVAAAKTESVLLATLAASLDSLITIDIDGR 225

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV-MNHYLTEILSLDLRQTLEK--ITL 530
           ++  N A ++LFGY   + + +     +   +        +           + K    L
Sbjct: 226 VVEFNLAATRLFGYSRHEAIGRYLEELIIPKSQHSSHRGGMERYRQTGSGNIINKRIELL 285

Query: 531 GSTKEEKLLS--LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
            + K    +   L ++  KL     ++  + DISE K  + KL  AK+ AE  +  KS F
Sbjct: 286 ATCKAGNEIPIELEVVPIKLGNEILFTAFLRDISERKASELKLQLAKEQAELGNKVKSRF 345

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
           LA +SHEIR+PL AI+G  E++ + +     N     +AN    +G+ +L+ +ND+LD S
Sbjct: 346 LATMSHEIRSPLNAILGGVELLLHSKL----NKEQRIHANITREAGSALLNTINDILDFS 401

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQI 707
           KIE+G+M L       D+ V++ + +++  A +K + + +    N+P+ +L D + + Q+
Sbjct: 402 KIEAGQMVLESNEFEPDKLVAQVLQILEPKAYDKGLQLVSFVDRNVPQTLLGDRQRLNQV 461

Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQI 763
             N++ NAI F+ SG  I +      N++    +  RV D+G+G++     K  K F Q+
Sbjct: 462 IHNLVDNAIKFSVSG-TITVEMWIADNQQSLMQLFCRVTDSGIGISEEAQSKLFKEFSQV 520

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819
            ++     +GTGLGL + + ++    G+  + S   KG        L     PH+ 
Sbjct: 521 HDTHNTNYKGTGLGLAICRELITMMGGEIELESELDKGCCFTFYVSL----QPHEA 572



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 82/181 (45%), Gaps = 6/181 (3%)

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
           IP +  ++  +         + VD R   + +E   ++L +IL++  DG  IIN +G I 
Sbjct: 42  IPVKGKDEIAQMGKAFNNMIDKVDART--KALEAANIRLNTILDSAVDGFVIINDKGTIT 99

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGST 533
             N A+S+LFGY   +++ +   +FL     S  + ++ + L   + Q +   +  +   
Sbjct: 100 DINPAISRLFGYAHNELIGQNVAIFLPFEMRSSHDSFIHQYLETGVTQIIGTSRELMAQR 159

Query: 534 KEEKLLS--LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
           K+ +L    L + + K+     +   + D+S+ K+++   +  + +     +   D L  
Sbjct: 160 KDGQLFPIALSVSLMKIDNKVMFIGLVKDLSDVKRKEVAAAKTESVLLATLAASLDSLIT 219

Query: 592 V 592
           +
Sbjct: 220 I 220



 Score = 45.4 bits (106), Expect = 0.036,   Method: Composition-based stats.
 Identities = 33/254 (12%), Positives = 70/254 (27%), Gaps = 23/254 (9%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI----DPNNHIGDLLKRQNTWY 144
           ID  G + E +    +  G    + IG  L ++                       N   
Sbjct: 220 IDIDGRVVEFNLAATRLFGYSRHEAIGRYLEELIIPKSQHSSHRGGMERYRQTGSGNIIN 279

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            +  L         +PI+L  +PI  +      F  F  +             +   ++ 
Sbjct: 280 KRIELLATCKAGNEIPIELEVVPI--KLGNEILFTAF--LRDISERKASELKLQLAKEQA 335

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE-KYPLLT 263
              +++K    +    +          P   +   V  L     +K+  +         +
Sbjct: 336 ELGNKVKSRFLATMSHEIRS-------PLNAILGGVELLLHSKLNKEQRIHANITREAGS 388

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
           +  +++ +  DF  I   Q         L++N  E  + ++          +D+G  L  
Sbjct: 389 ALLNTINDILDFSKIEAGQMV-------LESNEFEPDKLVAQVLQILEPKAYDKGLQLVS 441

Query: 324 ETVDKCPIPFFVYS 337
                 P       
Sbjct: 442 FVDRNVPQTLLGDR 455


>gi|304412836|ref|ZP_07394436.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183]
 gi|304348799|gb|EFM13217.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183]
          Length = 1629

 Score =  369 bits (948), Expect = e-99,   Method: Composition-based stats.
 Identities = 123/768 (16%), Positives = 261/768 (33%), Gaps = 60/768 (7%)

Query: 90   DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL--HIDPNNHIGDLLKRQNTWYGKT 147
            D  G +   ++   +  G     +IG   CD+       ++      ++   +      +
Sbjct: 363  DLTGNITSWNQGAEEIFGYTQTDVIGHSSCDLIIPPSIVLEEQVLFAEVFSGKTVLNQIS 422

Query: 148  TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA----LGKRLDKK 203
            T     G+  +V     +LPIY  +    G      +       +       L  RL+++
Sbjct: 423  THQRQNGS--HVSTSTTSLPIYDEDSAIVGLSQ--TIRDITTQQEAERYILSLNARLEQE 478

Query: 204  FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH-----KDDVLKTEK 258
             +      +      +   D  +QQ           +  + + + H     +  +L    
Sbjct: 479  VTKRTNALQQALLENQTLLDTINQQLLYSATDPNGVILEVNDNFCHVSGYSRKQLLGETH 538

Query: 259  YPLLTSEESSLPEQEDFHTINLNQYT---------------KKQYFGTLQNNSKESFEYL 303
              L + E  +   +  +  I                          G + N +     ++
Sbjct: 539  AILNSGEHDAAFWRTMWTQIKSGLSWHGEICNRDRHQMLKWFDTVIGPVFNENGNIERFV 598

Query: 304  SHRNHPSLSAYFDEGENLTPETVDKCPIP------FFVYSHGNLFYANPSFLLLTKYKSV 357
            + R   +        +N     +                  G +   N     L  Y +V
Sbjct: 599  ALRTDITERKLVQIEKNKLGSLLTNVLDAASEMSIIATDKKGVITIFNRGAEQLLGYAAV 658

Query: 358  DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR--------TCIAASARLHTIQWNREN 409
            D I ++      L     + +  +                    + +  R  T      +
Sbjct: 659  DMIGLSTPAPLHLPEEVAARSAELSSEYGEDIQGFDVFVYKARTLGSETRTWTYVRKDTS 718

Query: 410  SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469
               ++       +   E +   GI  +       ++ +      L    E    GI   +
Sbjct: 719  QCQVSLSVTAMLDNVGEIIGYLGIAIDISQVLQQQKALITASNHLSKAAEVAKLGIWSWD 778

Query: 470  REGIILSTNRAVSKL----FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
                 L  N  +  +           +  + + + +  +        L   +    +   
Sbjct: 779  LRDNSLEWNERMFAIYDQPLSLQDIGLTYEHWRMRIHSDDIDFAEAKLKAAVEEKDQYDP 838

Query: 526  EKITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
                + +    + +     I++              DI+E +Q +  L  AK  A+  ++
Sbjct: 839  IFRVVRTDGTIRYVQAGAQIERDVTGQVTKVIGINLDITEQRQLEETLREAKHEADAANA 898

Query: 584  HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
             KS FLA +SHEIRTP+ A++G  +++++         +  +Y      +   +L ++ND
Sbjct: 899  AKSAFLANMSHEIRTPMNAVLGMLQLMQHTSMSV----QQQDYVTKTQTAAKSLLGLLND 954

Query: 644  LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLR 702
            +LD SKI++GK+ L   P S++  + +   ++      K + +       +P  +LAD  
Sbjct: 955  ILDFSKIDAGKLTLDLHPCSIELLMRDLAIVLSGNHGNKNVEVMFDLDPALPAWLLADQL 1014

Query: 703  SVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDTGVGMTNYELEKAMK 758
             ++QI +N+  NA+ FT  G Q+ ++     +E     V + + DTG+G++  ++E+   
Sbjct: 1015 RLQQILVNLAGNALKFTRHG-QVTVTMECLRHEANTVTVQISISDTGIGISEEQIERIFT 1073

Query: 759  PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
             F Q  +S   R  GTGLGL ++K +V+   G+  + S    G+    
Sbjct: 1074 GFEQAESSTSRRFGGTGLGLAISKKLVELMGGQLNVTSRVGVGSRFWF 1121



 Score = 93.9 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 56/429 (13%), Positives = 120/429 (27%), Gaps = 43/429 (10%)

Query: 169 YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228
              ++EF G RGFG +   RV N   A      K         +  +    EKY I   +
Sbjct: 93  RDVDQEFPGARGFGFIR--RVPNSDEAAFLTRAKNDDWPDFNIRQLTPHSGEKYVIEYIE 150

Query: 229 SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288
              P  R +  +       AH+                + +   +       +    +  
Sbjct: 151 ---PIDRNRAAIGLDVASEAHRKAAADAAMLSGEVRLSAPITLVQATGKPLQSFLILQPI 207

Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSF 348
           + T+           + +   +    +     +T E +    +             N   
Sbjct: 208 YRTI-------SVPKTPQERLAAGYGWSYAPLVTNEVLTGLAL-------------NQKM 247

Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML----YRSDRTCIAASARLHTIQ 404
             L     +   E                +     +       +     IA  A + ++ 
Sbjct: 248 TKLL-LSDITQTERPISFFETHPDDASPLSAYSHTLTKEIFGRKWQVEVIAYPAFIQSLH 306

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
                 L    +     +     +            R  + ++E       S+LE + D 
Sbjct: 307 ------LNQPSLVLLSGSLLSLLLAAFIAIWSISLQRKQQVQLEQARR--ASMLEHSLDA 358

Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
           I   +  G I S N+   ++FGY   D++       +   +  +    L   +       
Sbjct: 359 IISYDLTGNITSWNQGAEEIFGYTQTDVIGHSSCDLIIPPSIVLEEQVLFAEVFSGKT-V 417

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEK 580
           L +I+    +    +S       +          S T+ DI+  ++ +  +       E+
Sbjct: 418 LNQISTHQRQNGSHVSTSTTSLPIYDEDSAIVGLSQTIRDITTQQEAERYILSLNARLEQ 477

Query: 581 ESSHKSDFL 589
           E + +++ L
Sbjct: 478 EVTKRTNAL 486



 Score = 77.8 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 39/392 (9%), Positives = 94/392 (23%), Gaps = 35/392 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGKT 147
            D +G + E+++      G    +++G     ++   H       +   +K   +W+G+ 
Sbjct: 509 TDPNGVILEVNDNFCHVSGYSRKQLLGETHAILNSGEHDAAFWRTMWTQIKSGLSWHGEI 568

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN----DPRALGKRLDKK 203
                +   +    D    P+++ N      R   +            +   LG  L   
Sbjct: 569 CN--RDRHQMLKWFDTVIGPVFNENGNIE--RFVALRTDITERKLVQIEKNKLGSLLTNV 624

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
                E+    +  +                   + +   T    H  + +      L +
Sbjct: 625 LDAASEMSIIATDKKGVITIFNRGAEQLLGYAAVDMIGLSTPAPLHLPEEVAARSAELSS 684

Query: 264 SEESSLPEQEDF----HTINLNQYT------------KKQYFGTLQNNSKESFEYLSHRN 307
                +   + F     T+     T                   + +N  E   YL    
Sbjct: 685 EYGEDIQGFDVFVYKARTLGSETRTWTYVRKDTSQCQVSLSVTAMLDNVGEIIGYLGIAI 744

Query: 308 HPSLSAYFDE----GENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYK-SVDDIE 361
             S      +      N   +  +   +  + +    N    N     +     S+ DI 
Sbjct: 745 DISQVLQQQKALITASNHLSKAAEVAKLGIWSWDLRDNSLEWNERMFAIYDQPLSLQDIG 804

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
           +      +       D    K                    +         +      + 
Sbjct: 805 LTYEHWRMRIHSDDIDFAEAKLKAAVEEKDQYDPI----FRVVRTDGTIRYVQAGAQIER 860

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
           +   +     GI  +  + R  +  +     +
Sbjct: 861 DVTGQVTKVIGINLDITEQRQLEETLREAKHE 892


>gi|83591406|ref|YP_425158.1| PAS/PAC sensor Signal transduction histidine kinase [Rhodospirillum
           rubrum ATCC 11170]
 gi|83574320|gb|ABC20871.1| PAS/PAC sensor signal transduction histidine kinase [Rhodospirillum
           rubrum ATCC 11170]
          Length = 773

 Score =  369 bits (948), Expect = e-99,   Method: Composition-based stats.
 Identities = 155/743 (20%), Positives = 283/743 (38%), Gaps = 47/743 (6%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL--LKRQNTWYGKTT 148
             G + E +    + +G  A  ++            +   +                +  
Sbjct: 52  RDGRVLEGNAAFFEALGRPADAVLDHP-----APFDVSIADAAATAGGPASPPPSRRRCA 106

Query: 149 LWPIEGT------NLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
               +G        + V   +A L + + +   +G  G  +           A   R   
Sbjct: 107 FLRADGVLVQATLGVGVLEGVAGLVLVTLDG-IAGADGCPLRRRAEATVPCAADRFRSLF 165

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
             + +           ++   +  +    P   +  K  S + +        +     LL
Sbjct: 166 DLAPIGMAMLDGERRWRQANSVMCRLLGVPFEGLAAKRWSDSVH-PEDRGRDERFFASLL 224

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQN-----NSKESFEYLSHRNHPSLSAYFDE 317
            +++ +          +          G +++     + +               A   E
Sbjct: 225 RNDDKASTTNLRLVAADGRVVPVTLSLGVMRDGPKGQSDQILVLVQDISERVDWEATKAE 284

Query: 318 GENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
            E      ++      F+    G +   N +   L    +             LDAP+ +
Sbjct: 285 NEARLRSLINATTDAIFLLDPDGAIRVINRAGARLLGTTARAAAGR--SFYEFLDAPQAT 342

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           +  A+            +A    ++ I+   E  L M   P    +   + M       +
Sbjct: 343 ERRALF--------GEVLATLLPVNGIERWGERWLDMVVFPVV--DGDGKAMGVTLFTRD 392

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
               R  + +       L    E  S  + + + +GI++  N A       P  + +  P
Sbjct: 393 ITSRREAEDRARAAERHLLEATELMSAAMLLFDPQGILVLINSACRAAL--PDLEDILHP 450

Query: 497 FTVFLEQNTPSVMNHYLTEILS-------LDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
              F+E     V      + ++                   G  K+ + L +R       
Sbjct: 451 GLSFIELRAAIVARRLFVQAITESQGGIKGGTPGPAPIEVRG--KDGRWLLIRQSAT--- 505

Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
            S    +   DI+E K+ +  L+ AK++AE  +  KS+FLA +SHE+RTPL AIIGFS++
Sbjct: 506 SSGYTLILGTDITELKRRERALADAKEVAEYANRAKSEFLANMSHELRTPLNAIIGFSDI 565

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
            ++Q FG L NP Y++YA  I  SG  +L+I++D+LD++KIE+G++ L  E V     V 
Sbjct: 566 TRHQMFGRLDNPVYVDYARNIYDSGTHLLEIISDILDLAKIEAGELGLDEEEVDAARLVD 625

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
            AI +V   A  KRI +      ++PR+  D   +KQ+ +N+LSNA+ +T   G + ++ 
Sbjct: 626 SAIQMVTPRATSKRIALTNLLTGDLPRLWCDPLRLKQVLINLLSNAVKYTQEDGAVAVTA 685

Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
                + + + V DTG+GM    ++ AM  FGQ+ +    R  GTGLGLPL + + +A+ 
Sbjct: 686 RLAGGDGLAISVIDTGIGMDEAGIQVAMTAFGQVESPYSRRQGGTGLGLPLTRKLTEAHQ 745

Query: 790 GKFYIFSTPAKGTLIEIIFPLYD 812
           G   I S P +GT + I+ P + 
Sbjct: 746 GCLTIASRPGEGTTVTILLPAHR 768


>gi|171059271|ref|YP_001791620.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
 gi|170776716|gb|ACB34855.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
          Length = 1959

 Score =  369 bits (948), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 123/793 (15%), Positives = 252/793 (31%), Gaps = 93/793 (11%)

Query: 89   IDAHGYLKEISEELPKTI---------------GNYAFK-MIGMRLCDVSDILHIDPNNH 132
            +DA G +  ++    +                 G  A +  +G     V +    D    
Sbjct: 679  LDADGNIVAVNAAWERFAHDNTDPGNEGSERSDGRPAPRTGVGDNYLRVCEAATGDEAAQ 738

Query: 133  IGDLLKR--QNTWYGKTTLWPIEGT----NLYVPIDLAALPIYSRNREFSGFRGFGIVHV 186
                +    +    G+   + ++ T           LA  P+ +R+   SG     +   
Sbjct: 739  -ARAIHDGIRAVLRGEAQAYAVDYTCHTPTRKRWFHLAVTPLRTRS---SGA--VMVHTD 792

Query: 187  NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH---------LRMK 237
                   + L ++ + +   +         +   +  + +                   +
Sbjct: 793  ITDRKREQELLRKSEARHRSMVNSLSEGIIIFDARGHVQACNPAAERMMGLTQAQMRGPR 852

Query: 238  NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHT---INLNQYTKKQYFGTLQN 294
                ++          +   K PLL +  +  P  +        +            ++ 
Sbjct: 853  ETGLAMWRPVQPNGRPMPRSKLPLLRTLTTGQPCHDVVLGGVTPDGKTRWLLANAEPVRE 912

Query: 295  N-SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLT 352
              S E    ++     S     ++        V++ P    +    GN+ Y N ++ L++
Sbjct: 913  PVSGELTGVVTSFTDISERFVAEQQLRKLSLAVEQSPTGIVITDVQGNIEYVNQAYTLVS 972

Query: 353  KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
             Y   + +         L    L+       +    +              +     +  
Sbjct: 973  GYSRDELMGHNPS----LAQSGLTPRQHYTDMWSTLAKGQSWQGE---FINRRKSGETYD 1025

Query: 413  MTFIPFEKANQFPENMPQNGIEPEDVDTRI-------------------------NKRKM 447
            +        +          I  +  + +                            + +
Sbjct: 1026 VFATVVPMRDGEGAVTHYLAISEDITERKRLSAELDQHRHHLEELVAERTQALQVAHQAL 1085

Query: 448  EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
                  L S+ +   D +   + +      N+A  K      E  + +     L     +
Sbjct: 1086 ADSEKFLRSLADNLPDRLTYWDTDLRCRFANKAFLKFHDLSEEQAIGRSSRHLL--MDQA 1143

Query: 508  VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEW 564
              + ++  + +                + +  + R+               + + DI+  
Sbjct: 1144 SASEWIVRMSAAMSGAPQHFERARLGADGRSRTERVHQIPDLKDGVVQGAFVLVSDITGI 1203

Query: 565  KQEK-------NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
            KQ +        +L+ A+  AE  +  KS FLA +SHEIRTP+ AIIG + ++       
Sbjct: 1204 KQAEQRLTQLNEELTFARDRAEAANRAKSVFLANMSHEIRTPMNAIIGLTHLLLRDSTDT 1263

Query: 618  LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
            +   R       +  + + +LD++ND+LD+SKIESGK+ L      +D  +S A +LV  
Sbjct: 1264 VQQER----LGQVTGAAHHLLDVINDILDLSKIESGKLELEQTDFPVDTLLSRACALVGE 1319

Query: 678  YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII---ISTTHTSN 734
             A  K + +          +  D   + Q  +N+LSNA+ FT  G  ++   I       
Sbjct: 1320 RARAKGLELVLDSHRLPTSLRGDPTRLSQALVNLLSNAVKFTEQGSVVVRAEIVHEDPDG 1379

Query: 735  EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
              V   V DTG+GM   ++ +    F Q  +S   R  GTGLGL + + + +   G+  +
Sbjct: 1380 LTVRFEVDDTGIGMAPEQIGRLFAAFEQADSSTTRRFGGTGLGLVITRHLAELMGGEVGV 1439

Query: 795  FSTPAKGTLIEII 807
             S P  G+     
Sbjct: 1440 SSAPGVGSRFWFT 1452



 Score =  180 bits (457), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 56/543 (10%), Positives = 148/543 (27%), Gaps = 47/543 (8%)

Query: 88   NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNT-WYG 145
                 G    +++ L +  G    +++ MR   V+    ++P    I   L  +   +  
Sbjct: 551  ETGLDGRWLHVNDRLCEITGYSRDELLQMRFQQVTLPEELEPMQVLIERTLAGEQNGFSI 610

Query: 146  KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
            +      +G    + + +    +   +     F    ++    +     A      +   
Sbjct: 611  EKRDRHRDG--WLIWVHVWTQLVRDEHGAPQYF--VSVIEDISLRKQTEAALAESVELVQ 666

Query: 206  HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL---- 261
             + +    H +V     +I +  +        N                           
Sbjct: 667  AVEDSVLDHMAVLDADGNIVAVNAAWERFAHDNTDPGNEGSERSDGRPAPRTGVGDNYLR 726

Query: 262  ---LTSEESSLPEQEDFHTINL-------------------NQYTKKQYFGTLQ-NNSKE 298
                 + + +   +     I                      +         L+  +S  
Sbjct: 727  VCEAATGDEAAQARAIHDGIRAVLRGEAQAYAVDYTCHTPTRKRWFHLAVTPLRTRSSGA 786

Query: 299  SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSV 357
               +    +         + E      V+       ++   G++   NP+   +      
Sbjct: 787  VMVHTDITDRKREQELLRKSEARHRSMVNSLSEGIIIFDARGHVQACNPAAERMMGLTQA 846

Query: 358  DD--IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
                    G        P        K  +L             L  +  + +    +  
Sbjct: 847  QMRGPRETGLAMWRPVQPNGRPMPRSKLPLLRTLTTGQPCHDVVLGGVTPDGKTRWLLAN 906

Query: 416  IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
                +     E         +  +  + ++++     +L   +E +  GI I + +G I 
Sbjct: 907  AEPVREPVSGELTGVVTSFTDISERFVAEQQLR----KLSLAVEQSPTGIVITDVQGNIE 962

Query: 476  STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
              N+A + + GY  ++++    ++     TP      +   L+    Q+ +   +   K 
Sbjct: 963  YVNQAYTLVSGYSRDELMGHNPSLAQSGLTPRQHYTDMWSTLAKG--QSWQGEFINRRKS 1020

Query: 536  EKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
             +   +   +  +         Y     DI+E K+   +L   +   E+  + ++  L +
Sbjct: 1021 GETYDVFATVVPMRDGEGAVTHYLAISEDITERKRLSAELDQHRHHLEELVAERTQAL-Q 1079

Query: 592  VSH 594
            V+H
Sbjct: 1080 VAH 1082



 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 57/526 (10%), Positives = 135/526 (25%), Gaps = 49/526 (9%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTWY 144
            +  D  G     + E  +  G  A  ++G     +               +++      
Sbjct: 424 IFAKDLQGRYLLFNREASRLTGMSADAVLGNDDHLLFPPEQAAKVMANDAQVMRDGQVGT 483

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            +  L   EG   Y+       P+     +  G   FGI               R + ++
Sbjct: 484 FEEELDTPEGRATYM---ATKGPLRDTQGQVVGM--FGISRDVTEKRRAEQALARSEARY 538

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSSLTEYYAHKDDVLKTEK---Y 259
               E      S                      ++++  +        + L+  +    
Sbjct: 539 RAAFEQAAVGMSETGLDGRWLHVNDRLCEITGYSRDELLQMRFQQVTLPEELEPMQVLIE 598

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
             L  E++    ++     +        +   +++       ++S     SL    +   
Sbjct: 599 RTLAGEQNGFSIEKRDRHRDGWLIWVHVWTQLVRDEHGAPQYFVSVIEDISLRKQTEAAL 658

Query: 320 NLTPETVDKCPIPFF-----VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL----- 369
             + E V             + + GN+   N ++       +    E +           
Sbjct: 659 AESVELVQAVEDSVLDHMAVLDADGNIVAVNAAWERFAHDNTDPGNEGSERSDGRPAPRT 718

Query: 370 -----LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN-------RENSLAMTFIP 417
                      +             D               +       R+    +   P
Sbjct: 719 GVGDNYLRVCEAATGDEAAQARAIHDGIRAVLRGEAQAYAVDYTCHTPTRKRWFHLAVTP 778

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
               +     +       +  D +  +  +     +  S++ + S+GI I +  G + + 
Sbjct: 779 LRTRSSGAVMVH-----TDITDRKREQELLRKSEARHRSMVNSLSEGIIIFDARGHVQAC 833

Query: 478 NRAVSKLFGYPVEDILRKP-----FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL-G 531
           N A  ++ G     +             ++ N   +    L  + +L   Q    + L G
Sbjct: 834 NPAAERMMGLTQAQMRGPRETGLAMWRPVQPNGRPMPRSKLPLLRTLTTGQPCHDVVLGG 893

Query: 532 STKEEKLLSLRIIIKKLPFS-----SCYSLTMHDISEWKQEKNKLS 572
            T + K   L    + +        +    +  DISE    + +L 
Sbjct: 894 VTPDGKTRWLLANAEPVREPVSGELTGVVTSFTDISERFVAEQQLR 939



 Score =  120 bits (302), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 47/398 (11%), Positives = 109/398 (27%), Gaps = 27/398 (6%)

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
           L    S    + +G     +       +  P     M   +         + D  +  + 
Sbjct: 304 LATSDSLAARVVRGELPYGRAVEAPDFRDKPVFGAVMP--IKGTDWLLVARIDRAELIEL 361

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
            +  +               +  Y  ++          +S E+                 
Sbjct: 362 AMKDAMWIGAAGLLALFMGGVAAYWLRERQSLQFELRAQSQEH-----------ERLRAL 410

Query: 320 NLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
            L     D      F     G     N     LT   +   +        LL  P+ +  
Sbjct: 411 ALLSAIADSSTDAIFAKDLQGRYLLFNREASRLTGMSADAVLGND---DHLLFPPEQAAK 467

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
                  + R D         L         +   T  P    +   + +   GI  +  
Sbjct: 468 VMANDAQVMR-DGQVGTFEEEL--DTPEGRATYMATKGPL--RDTQGQVVGMFGISRDVT 522

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
           + R  ++ +     +  +  E  + G++    +G  L  N  + ++ GY  +++L+  F 
Sbjct: 523 EKRRAEQALARSEARYRAAFEQAAVGMSETGLDGRWLHVNDRLCEITGYSRDELLQMRFQ 582

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----Y 554
                     M   +   L+   +           ++  L+ + +  + +         +
Sbjct: 583 QVTLPEELEPMQVLIERTLA-GEQNGFSIEKRDRHRDGWLIWVHVWTQLVRDEHGAPQYF 641

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
              + DIS  KQ +  L+ + ++ +       D +A +
Sbjct: 642 VSVIEDISLRKQTEAALAESVELVQAVEDSVLDHMAVL 679



 Score =  114 bits (285), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 36/431 (8%), Positives = 112/431 (25%), Gaps = 36/431 (8%)

Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM-KNKVSSLT 244
             R  +      + L    +          + + +   +   +       M  + V    
Sbjct: 396 ELRAQSQEHERLRALALLSAIADSSTDAIFAKDLQGRYLLFNREASRLTGMSADAVLGND 455

Query: 245 EYYAHKDDVLKTEKYPLLT-SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303
           ++     +              +  +   E+       + T     G L++   +     
Sbjct: 456 DHLLFPPEQAAKVMANDAQVMRDGQVGTFEEELDTPEGRATYMATKGPLRDTQGQVVGMF 515

Query: 304 SHRNH----PSLSAYFDEGENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVD 358
                              E       ++  +        G   + N     +T Y   +
Sbjct: 516 GISRDVTEKRRAEQALARSEARYRAAFEQAAVGMSETGLDGRWLHVNDRLCEITGYSRDE 575

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
            ++             L +      V++ R+        +     +      + +     
Sbjct: 576 LLQ------MRFQQVTLPEELEPMQVLIERTLAGEQNGFSIEKRDRHRDGWLIWVHVWTQ 629

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
              ++         +  +    +  +  +   V  + ++ ++  D +A+++ +G I++ N
Sbjct: 630 LVRDEHGAPQYFVSVIEDISLRKQTEAALAESVELVQAVEDSVLDHMAVLDADGNIVAVN 689

Query: 479 RAVSKL----------------------FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
            A  +                        G     +         E      ++  +  +
Sbjct: 690 AAWERFAHDNTDPGNEGSERSDGRPAPRTGVGDNYLRVCEAATGDEAAQARAIHDGIRAV 749

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKK 576
           L  + +      T  +   ++   L +   +   SS   +   DI++ K+E+  L  ++ 
Sbjct: 750 LRGEAQAYAVDYTCHTPTRKRWFHLAVTPLRTR-SSGAVMVHTDITDRKREQELLRKSEA 808

Query: 577 IAEKESSHKSD 587
                 +  S+
Sbjct: 809 RHRSMVNSLSE 819


>gi|300865030|ref|ZP_07109857.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300336967|emb|CBN55007.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 1162

 Score =  369 bits (948), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 117/638 (18%), Positives = 243/638 (38%), Gaps = 31/638 (4%)

Query: 190 DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL--RMKNKVSSLTEYY 247
             +     +  +++F H  E      ++        +  S    +      ++S+LT   
Sbjct: 300 VAERTKALRASEEQFRHSFEDASIGMAIVSLDGHWINVNSALCQIIGYSPEELSALTFQD 359

Query: 248 AHKDDVLKTE---KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
               D L+ E      LL    S+   ++ +     +          +Q+       +++
Sbjct: 360 ITYPDDLEVELSYAQQLLAGTISTYQLEKRYFHKQGHIVWILLNGSLVQDEQGNPLHFIA 419

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFV--YSHGNLFYANPSFLLLTKYKSVDDIEI 362
                +      +   L    ++       +   +   + Y N  +  +  Y   +    
Sbjct: 420 QIQDITARKAAQKTLELQSIIMNNMAGGVCLVKAADLTIVYTNRKYDAMFGYLEGELAGQ 479

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
             G+   +D     D + +        D     A   +H  + +                
Sbjct: 480 PVGILNYVDTQVTPDVSVLDIATQLDRDGE---AKYEVHNRKKDG---TLFWCRVHTSRF 533

Query: 423 QFPE-NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII--LSTNR 479
           + PE       ++ +  + ++ ++ ++    +L  +L  +   I     +G       + 
Sbjct: 534 EHPEYGTVYVAVQQDVTELQLAEKALQATTNRLNFLLNYSPVVIFSCKPDGDYGATFISE 593

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
            +  + GY   + L      ++    P  ++     + +L +             +    
Sbjct: 594 NIKDVLGYETREFLEDS-KFWVNHLHPDDVDQVFHGLANLYVNNYYFHEYRLRRSDGVYR 652

Query: 540 SLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
            +   ++ +   +         + DIS+ KQ + +L  AK+ AE  +  KS FLA +SHE
Sbjct: 653 WILNQLRLIRDCAGKPVEIVGYLIDISDRKQAELELRQAKEAAEAANQAKSVFLANMSHE 712

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           +RTPL +I+GF++++  +           E    I+RSG  +LD++ND+LD+SKIESG+M
Sbjct: 713 LRTPLNSILGFTQLMSYENNLTSS---LQERLQIINRSGRHLLDLINDILDLSKIESGRM 769

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSN 714
            L+     L   ++    ++Q+    K + +     + +P  +  D + + Q+ +N+LSN
Sbjct: 770 TLNPSDFDLINLLTSIEEMLQVKVQSKSLQLIVERESELPNFVHTDEKKLYQVLVNLLSN 829

Query: 715 AIHFTPSGGQIIISTTHTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           A+ FT  G  I +       E     +   V DTGVG+   E++K  K F Q   +    
Sbjct: 830 ALKFTQQGS-ITLRVRAEQKEKHSCRLCFEVEDTGVGIAPTEIDKLFKVFVQA-QAGNNL 887

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            +GTGLGL +++ +V    G+  + ST  +G+      
Sbjct: 888 SQGTGLGLAISQKLVQLMGGQIQVQSTLNRGSTFSFEI 925



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 30/379 (7%), Positives = 89/379 (23%), Gaps = 28/379 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ--NTWYGK 146
           +   G+   ++  L + IG    ++  +   D++    ++        L     +T+  +
Sbjct: 328 VSLDGHWINVNSALCQIIGYSPEELSALTFQDITYPDDLEVELSYAQQLLAGTISTYQLE 387

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
              +  +G    V I L    +         F     +               L     +
Sbjct: 388 KRYFHKQGHI--VWILLNGSLVQDEQGNPLHF--IAQIQDITARKAA-QKTLELQSIIMN 442

Query: 207 -------LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
                  L +           KYD                + +  +     D  +     
Sbjct: 443 NMAGGVCLVKAADLTIVYTNRKYDAMFGYLEGELAGQPVGILNYVDTQVTPDVSVLDIAT 502

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS---KESFEYLSHRNHPSLSAYFD 316
            L    E+           +   +  + +    ++                         
Sbjct: 503 QLDRDGEAKYEVHN--RKKDGTLFWCRVHTSRFEHPEYGTVYVAVQQDVTELQLAEKALQ 560

Query: 317 EGENLTPETVDKCPIPFFVYSHG---NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
              N     ++  P+  F           + + +   +  Y++ + +E     S      
Sbjct: 561 ATTNRLNFLLNYSPVVIFSCKPDGDYGATFISENIKDVLGYETREFLED----SKFWVNH 616

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
              D+     V    ++          + ++ +      +        +   + +   G 
Sbjct: 617 LHPDDV--DQVFHGLANLYVNNYYFHEYRLRRSDGVYRWILNQLRLIRDCAGKPVEIVGY 674

Query: 434 EPEDVDTRINKRKMEIEVM 452
             +  D +  + ++     
Sbjct: 675 LIDISDRKQAELELRQAKE 693



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 57/161 (35%), Gaps = 5/161 (3%)

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII 474
               +   Q  E   +   E  ++      + +     Q     E  S G+AI++ +G  
Sbjct: 275 LNQIDSKRQQAEAELKKLNETLEILVAERTKALRASEEQFRHSFEDASIGMAIVSLDGHW 334

Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
           ++ N A+ ++ GY  E++    F      +   V   Y  ++L+     T +       K
Sbjct: 335 INVNSALCQIIGYSPEELSALTFQDITYPDDLEVELSYAQQLLA-GTISTYQLEKRYFHK 393

Query: 535 EEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKL 571
           +  ++ + +    +         +   + DI+  K  +  L
Sbjct: 394 QGHIVWILLNGSLVQDEQGNPLHFIAQIQDITARKAAQKTL 434


>gi|170741503|ref|YP_001770158.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
 gi|168195777|gb|ACA17724.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
          Length = 973

 Score =  369 bits (947), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 120/663 (18%), Positives = 231/663 (34%), Gaps = 31/663 (4%)

Query: 166 LPIYSRNREFSG-FRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDI 224
           LP+  R   F G F G  +  +             L ++ +       G           
Sbjct: 162 LPLARRLNNFDGSFAGVVVAELEPDYFAQFYATFGLGERGTIGLWSSNGRLLSRDPAAPT 221

Query: 225 FS----QQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINL 280
            S      S P    ++   + + +      D +K         +  +L       T + 
Sbjct: 222 ESQDKDFSSTPLFHNLRRISTGVYDAPPAPIDGVKRIVAYERLVKYPALVVTAGIATDDA 281

Query: 281 NQYTKKQYFGTLQNNSKESFEYLSH--------RNHPSLSAYFDEGENLTPETVDKCPIP 332
               +++        S      +          R   +  A      +L   T++     
Sbjct: 282 LAAWRREALVQASAISTAVLALVGLGVGLGRRDRRVRAAEAEARASADLLAVTLENMDQG 341

Query: 333 -FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR 391
              + +   +   N   L L               +        ++              
Sbjct: 342 LMMIDADDRVQVCNRRALELLDLPPAFMARKPTFTAVRNHQLAHNEFAHSDEAFRTWVAT 401

Query: 392 TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV 451
             +      +  +      L +  +P                  +       +R      
Sbjct: 402 AGLEPREHTYERERPNGTVLEIRTVPLAGG-------GAVRTYTDITARHGAERARRESE 454

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
            +   + +  SD I + + +G     + +V  + GY VE+  R      L  +  + ++ 
Sbjct: 455 ARYKVLADNVSDLIVLGHADGRRSYISPSVHAMLGYAVEEAHRIRVRDCLHPDDLNRVSA 514

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT--MHDISEWKQEKN 569
               +       ++  +     K    + +    K++  +   ++   + D+++  +++ 
Sbjct: 515 AAASLSRERPTASV--VFRLKHKAGHYVWVEAAYKRIEDADEVTIVTAIRDVTQRVRQER 572

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
            L  A+  AE  +  K++FLA +SHE+RTPLT ++G  +++         +         
Sbjct: 573 HLERARVEAEAGARAKAEFLANMSHELRTPLTGMLGVHDLLAGD---ASLSDAQRHLVGL 629

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
              +G  +L IVND+LD SKIE+G+M +   P SL   V    +LV   A +K + + T 
Sbjct: 630 AQEAGRSLLAIVNDILDFSKIEAGQMAIESVPFSLRALVESCRALVAESAKDKPLRLVTD 689

Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN-EEVILRVRDTGVG 747
              + P   + D   ++QI LN+ SNA+ FTP G +I +     ++   V + V DTG+G
Sbjct: 690 IEGDAPDRFVGDPTRLRQILLNLASNAVKFTPRG-EITMRVGFAASTGRVRVAVTDTGIG 748

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           +   +L    + F Q   S   R  GTGLGL + K +V+   G   + S P +G+     
Sbjct: 749 IPADKLPLLFERFSQADASTTRRYGGTGLGLVICKRLVELMGGTIGVESVPGRGSTFWFE 808

Query: 808 FPL 810
            PL
Sbjct: 809 LPL 811



 Score = 58.1 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 69/238 (28%), Gaps = 14/238 (5%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150
           A G    IS  +   +G    +   +R+ D      ++  +     L R+          
Sbjct: 473 ADGRRSYISPSVHAMLGYAVEEAHRIRVRDCLHPDDLNRVSAAAASLSRERPTASVVFRL 532

Query: 151 -PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
               G   YV ++ A   I   +          IV   R         + L++      E
Sbjct: 533 KHKAGH--YVWVEAAYKRIEDADE-------VTIVTAIRDVTQRVRQERHLER---ARVE 580

Query: 210 IKKGHSSVEKEKYDIFSQ-QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
            + G  +  +   ++  + ++P   +   + + +     +     L         S  + 
Sbjct: 581 AEAGARAKAEFLANMSHELRTPLTGMLGVHDLLAGDASLSDAQRHLVGLAQEAGRSLLAI 640

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
           + +  DF  I   Q   +    +L+   +     ++            + E   P+  
Sbjct: 641 VNDILDFSKIEAGQMAIESVPFSLRALVESCRALVAESAKDKPLRLVTDIEGDAPDRF 698



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/240 (7%), Positives = 54/240 (22%), Gaps = 7/240 (2%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           IDA   ++  +    + +       +  +    +   H   +N      +   TW     
Sbjct: 345 IDADDRVQVCNRRALELLDLPPA-FMARKPTFTAVRNHQLAHNEFAHSDEAFRTWVATAG 403

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           L P E T      +   L I +     +G             +      +  + ++  L 
Sbjct: 404 LEPREHTYERERPNGTVLEIRTVP--LAGGGAVRTYTDITARHGAERARRESEARYKVLA 461

Query: 209 EIKKGHSSVEKEKYDIFSQQSP----PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
           +       +                   +   +     + +     D    +     L+ 
Sbjct: 462 DNVSDLIVLGHADGRRSYISPSVHAMLGYAVEEAHRIRVRDCLHPDDLNRVSAAAASLSR 521

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
           E  +            +    +  +  +++  + +           +             
Sbjct: 522 ERPTASVVFRLKHKAGHYVWVEAAYKRIEDADEVTIVTAIRDVTQRVRQERHLERARVEA 581


>gi|229163580|ref|ZP_04291529.1| hypothetical protein bcere0009_43460 [Bacillus cereus R309803]
 gi|228619830|gb|EEK76707.1| hypothetical protein bcere0009_43460 [Bacillus cereus R309803]
          Length = 571

 Score =  369 bits (947), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 92/388 (23%), Positives = 180/388 (46%), Gaps = 26/388 (6%)

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           +           +   + +  +E E    +L +++E    G+ +I+  G I   NR+  +
Sbjct: 200 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 259

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542
            F    E+ L + +           +   + EI   +++   + +  LG  ++   +   
Sbjct: 260 TFHVTDEEYLDRLYYESFHHT---EIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 316

Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
            II          L  HDI+E K+ +                + DFLA VSHE++TP+T+
Sbjct: 317 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 362

Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           I GFSE + +   G + N ++ E + + I +    +  ++ DLLD+SKIE     L+   
Sbjct: 363 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGT 419

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           V +   + +   ++   A EK I ++ +    +  ++ D   +KQI +N+++NAI +TP+
Sbjct: 420 VDMKGLLEDIHMVLDNKAGEKEISLQVNVLKRV-SVIGDPSRLKQIFINLINNAIVYTPA 478

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           GG + +           ++V DTG+G++  E+ +  + F ++  ++     GTGLGL + 
Sbjct: 479 GGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIV 537

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           K +V+A+ G   + S   +GT   ++ P
Sbjct: 538 KHLVEAHHGTITVDSEVGEGTTFTVVLP 565


>gi|95930791|ref|ZP_01313523.1| multi-sensor hybrid histidine kinase [Desulfuromonas acetoxidans DSM
            684]
 gi|95133139|gb|EAT14806.1| multi-sensor hybrid histidine kinase [Desulfuromonas acetoxidans DSM
            684]
          Length = 1969

 Score =  369 bits (947), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 125/581 (21%), Positives = 218/581 (37%), Gaps = 53/581 (9%)

Query: 270  PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
                + H  +       Q    L           ++R   +      + E       D  
Sbjct: 884  HVNREHHWEHDEIIFGCQVADQLGMVLLTQERLQANREAEASRQELLQSEERLRCITDSA 943

Query: 330  PIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK-PVMLY 387
                 +    G + Y NP+   +  Y + + +     L  LL  PK   ++    P  L 
Sbjct: 944  SDAILMMDPQGAISYWNPAATQIFGYAAEEALGRN--LHELLAPPKHIKSHLSAFPEFLR 1001

Query: 388  RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
                  +  +  L  I  +      +       A Q   +     I  +  + + ++ ++
Sbjct: 1002 SGTGAAVNKTVELSAICKDGRE---IPIALSLSAVQLNASWHAVAIVRDISEAKQHEAEL 1058

Query: 448  EIEVMQ--------------------------------LCSILEATSDGIAIINREGIIL 475
                 +                                L +I +A S GIA I ++  I+
Sbjct: 1059 LEAKQRAEQSEQAKTQVLEQLEDMVANRTRELKQSNLKLQAIFDAASSGIAQI-KDRTII 1117

Query: 476  STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
              NR + ++FGY   ++L     V+   ++  +      +     L +      L   K+
Sbjct: 1118 RCNRRMEEIFGYGPGEMLNLSTRVWYASDSQYLKVGEQVKEAMARLGEYSSGDILLRRKD 1177

Query: 536  EKLLSLRIIIKKL---PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
                  R   KKL      + +     D++  ++    L  AK+ AE+ +  KS FLA +
Sbjct: 1178 GSRFWARSKAKKLQLEGAENTFVSMFDDVTAEREAAEALRLAKESAEEANQAKSSFLANM 1237

Query: 593  SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
            SHEIRTP+ AIIG + ++K         P+ +     +  +   +L I+ND+LD SKIE+
Sbjct: 1238 SHEIRTPMNAIIGLAHLLKRD-----ATPQQVGQLEKVSDAAQHLLRIINDILDFSKIEA 1292

Query: 653  GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712
            GKM L      L+  +    SL+   A +K +   T+ A+    +  D   + QI LN  
Sbjct: 1293 GKMILEPMDFELENVIDTVRSLLSEKAVDKGLEFITNIADLPQYLHGDGLRLGQILLNFA 1352

Query: 713  SNAIHFTPSGGQIIISTTH----TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
            +NA+ FT +G  I +        +    +   V DTGVGMT  +     + F Q   S  
Sbjct: 1353 ANAVKFTTNGS-ISLHAEQLGEESDTIWIRFTVSDTGVGMTEAQQRHLFEAFEQGDRSTT 1411

Query: 769  IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             +  GTGLGL +++ + D   G+  + S P  G+   +  P
Sbjct: 1412 RQFGGTGLGLAISRKLTDLMGGEIGVKSEPGSGSKFWVDLP 1452



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 7/84 (8%)

Query: 719 TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
             + G+I I T  +    + + + DTG GM    ++K   P           G GTGLGL
Sbjct: 1   MEAQGRITICTG-SDAHTICVEISDTGCGMPQSVIDKIFDPLFTTNP----VGLGTGLGL 55

Query: 779 PL-AKAMVDANMGKFYIFSTPAKG 801
            + A   +  + G   + S    G
Sbjct: 56  SIYADN-MRRHSGTIAVNSVIGDG 78



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/160 (13%), Positives = 55/160 (34%), Gaps = 10/160 (6%)

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILR 494
           +  +        E +   L ++   T++G+   + E G  +  N A +   GY  E+   
Sbjct: 606 DVANRHSTIASFEEQHQLLATMFSQTTNGVLFTDIETGEFIEFNDAAATALGYTREEFSL 665

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554
                   +   +        + + +    +   T    K+  +  + + ++++ F    
Sbjct: 666 LSVIDIQAEQKTAEFEEKSQRVAAGEK---INFETQHRCKDGSVRDVFMTLRRITFRGRQ 722

Query: 555 S--LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
               + HDI+E K+        +K   +    +S  L  +
Sbjct: 723 MLAASWHDITEQKKRLRD----QKKTVERLRMQSQLLGGI 758



 Score = 71.6 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 42/261 (16%), Positives = 84/261 (32%), Gaps = 20/261 (7%)

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
            L         A                 T    +K    P            +     +
Sbjct: 291 RLSNQLGQIATALGEFTVDNIPDNLPQIETLNSNDKNLLKPLAGAVLSFHRNLIARINAE 350

Query: 445 RKMEIE-------VMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKP 496
           ++++ E          L +I E + +GI + +      ++ N +  ++ GY  E+     
Sbjct: 351 QRLQKEQFRQHSQKEFLATIAEQSPNGILLADCSTLEFITFNDSACRMLGYSREEFSNMT 410

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---- 552
               +   + S +  ++ E+++ +     E  T    K+  L  LRI ++ L        
Sbjct: 411 LYDIIANRSASELEQHIAELIATNG---GEFETDHRRKDGSLCHLRISVRILKIDGKTCI 467

Query: 553 -CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT-PL-TAIIGFSEV 609
               + + +++E K +     H  K   KE +   D  A    E  T PL   +    E 
Sbjct: 468 SGIWIDLSELTEAKMKLAAEHHQLKERIKEQACLYDIFALT--EDNTQPLENVLQNVVER 525

Query: 610 IKNQRFGPLGNPRYIEYANYI 630
           +      P      I++A+ I
Sbjct: 526 LPAGWQYPQITEARIKFADQI 546



 Score = 55.4 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/283 (8%), Positives = 74/283 (26%), Gaps = 18/283 (6%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQ-NTWYG 145
            +D  G +   +    +  G  A + +G  L ++        +  +   + L+        
Sbjct: 950  MDPQGAISYWNPAATQIFGYAAEEALGRNLHELLAPPKHIKSHLSAFPEFLRSGTGAAVN 1009

Query: 146  KTTLW---PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
            KT        +G  + + + L+A+ + +       +    IV          A      +
Sbjct: 1010 KTVELSAICKDGREIPIALSLSAVQLNAS------WHAVAIVRDISEAKQHEAELLEAKQ 1063

Query: 203  KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
            +     + K       ++     +++    +L+++    + +   A   D         +
Sbjct: 1064 RAEQSEQAKTQVLEQLEDMVANRTRELKQSNLKLQAIFDAASSGIAQIKDRTIIRCNRRM 1123

Query: 263  TSEESSLPEQ------EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
                   P +        ++  +       +          E             S ++ 
Sbjct: 1124 EEIFGYGPGEMLNLSTRVWYASDSQYLKVGEQVKEAMARLGEYSSGDILLRRKDGSRFWA 1183

Query: 317  EGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDD 359
              +    +          ++            L L K  + + 
Sbjct: 1184 RSKAKKLQLEGAENTFVSMFDDVTAEREAAEALRLAKESAEEA 1226



 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 40/376 (10%), Positives = 96/376 (25%), Gaps = 29/376 (7%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPIE 153
               ++   + +G    +   M L D+           HI +L+        +T     +
Sbjct: 388 FITFNDSACRMLGYSREEFSNMTLYDIIANRSASELEQHIAELIATNGG-EFETDHRRKD 446

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
           G+  ++ I +  L I       SG   +  +          A      K+          
Sbjct: 447 GSLCHLRISVRILKI-DGKTCISGI--WIDLSELTEAKMKLAAEHHQLKERIKEQACLYD 503

Query: 214 HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH---KDDVLKTEKYPLLTSEESS-- 268
             ++ ++              R+           A     D +  T  +     ++S+  
Sbjct: 504 IFALTEDNTQPLENVLQNVVERLPAGWQYPQITEARIKFADQIFTTAAFEETPWQQSANA 563

Query: 269 --LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL-----SHRNHPSLSAYFDEGENL 321
             L +     TI   +   ++  G      +   + +        N  S  A F+E   L
Sbjct: 564 VTLTDVPVVITIVYREEQPQEQEGVFLAEERSLLDAILKRICDVANRHSTIASFEEQHQL 623

Query: 322 TPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
                 +            G     N +      Y   +       L +++D        
Sbjct: 624 LATMFSQTTNGVLFTDIETGEFIEFNDAAATALGYTREE-----FSLLSVIDIQAEQKTA 678

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
             +      +    I    +    +    +   +         +  + +  +    +  +
Sbjct: 679 EFEEKSQRVAAGEKINFETQH---RCKDGSVRDVFMTLRRITFRGRQMLAASW--HDITE 733

Query: 440 TRINKRKMEIEVMQLC 455
            +   R  +  V +L 
Sbjct: 734 QKKRLRDQKKTVERLR 749


>gi|302036176|ref|YP_003796498.1| putative hybrid histidine kinase [Candidatus Nitrospira defluvii]
 gi|300604240|emb|CBK40572.1| putative Hybrid histidine kinase [Candidatus Nitrospira defluvii]
          Length = 1210

 Score =  369 bits (947), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 132/801 (16%), Positives = 251/801 (31%), Gaps = 97/801 (12%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP--NNHIGDLL----KRQNT 142
           +D H  +  ++ E  +  G    +++G RL D+  + +           +L     +  +
Sbjct: 94  VDGHWNIVLLNPEGERLWGLTEKEVVGRRLHDMISLSYGTKLTEPIFTQILLDDTAQGGS 153

Query: 143 WY-GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
           +      L  I G +  V   LA  PI   NR         +            + +  +
Sbjct: 154 FRTDDGLLTSITGRSFPVSCVLA--PIVQENRS---AGAVLVFRDIMERKQTEDIRRHTE 208

Query: 202 KKF----------------------SHLHEIKKGHSSVEKE------------------- 220
                                      L EI +  +                        
Sbjct: 209 SLLRRQQTTLLELTRNSIIQSGVLEPALQEITRATAITLGVSRTSIWLLSEDHDSIRCKD 268

Query: 221 -----------KYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
                        DI S   P     + ++               +     L      ++
Sbjct: 269 LYESSKHSHSSGIDIQSAHFPEYFRALLSERVIDAADAKSDPRTREFTASYLEPLGIGAM 328

Query: 270 PEQEDF-----------HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
            +                 I   +    +        +      L             + 
Sbjct: 329 LDIPIRFKGKLVGVLCNEHIGPPRPWMLEEQQFGHAIASLVSLALEAVERLHAEGALRKS 388

Query: 319 ENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
           E  T   +D        +   G +   N     +  +   + +  A    TL+       
Sbjct: 389 EGRTRLIIDTALSAVIGMDERGLIIGWNTQAEQIFGWTRQEALGRA-MTDTLIPPAHRET 447

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
           +       L   D   +     +  ++ +                +            + 
Sbjct: 448 HQRGLERFLKTGDGPILNKRIEVTALRRDGTEF---PVELAITPLRIENAYTFTAFVVDI 504

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK-- 495
            + +  +  +     +L   ++ +  GI   N     +  +       GY    +     
Sbjct: 505 SERKEAEEALRTSEARLTMTVQGSHIGIWDWNLTTGAIYFSSQWKNQLGYDDTTLPNSFD 564

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF----S 551
            +   +  +    +   +   L    R   E       ++     +      +      +
Sbjct: 565 EWRTRIHPDDQPFVQETIQACL-DGQRSQFELEHRLRHRDGSYRWILSRGSLIRDLYGVT 623

Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
           +       D ++ K+ + +L  AK+ AE  S  KS+FLA +SHEIRTP+  ++G +E++ 
Sbjct: 624 ARMVGIHIDTTDRKRTEEELRSAKEAAEAASKAKSEFLANMSHEIRTPMNGVLGTTELLL 683

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
           N         +    A+ + RSG  +L I+ND+LD SKIE+GK++L      L   + E+
Sbjct: 684 NSAL----TDKQRHLASTVHRSGRTLLAIINDILDFSKIEAGKLDLECVDFDLLPVLEES 739

Query: 672 ISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
           + L    A  K++ +    A+ +PR +  D    +QI +N+LSNA+ FT +GG + +S  
Sbjct: 740 LELFGEAARRKQLRLSQHIADAVPRYLKGDPVRFRQILMNLLSNAMKFTETGG-VSLSAE 798

Query: 731 HTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
           +         +   V DTG+G+      +    F Q   S   R  GTGLGL +AK +V 
Sbjct: 799 YVEGTTTQALLRFAVTDTGIGIPPAAKSRIFDAFSQADGSTTRRYGGTGLGLSIAKQLVG 858

Query: 787 ANMGKFYIFSTPAKGTLIEII 807
              G   + STP  G+     
Sbjct: 859 LMGGTITVESTPGSGSTFAFT 879



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/161 (12%), Positives = 62/161 (38%), Gaps = 11/161 (6%)

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
            R ++ ++  E  +L ++L +  DG+ +++    I+  N    +L+G   ++++ +    
Sbjct: 66  RRTSESQLAGERDKLQTVLRSIGDGLCVVDGHWNIVLLNPEGERLWGLTEKEVVGRRLHD 125

Query: 500 FLEQNTPSVMNH------YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS- 552
            +  +  + +         L +       +T + +    T   +   +  ++  +   + 
Sbjct: 126 MISLSYGTKLTEPIFTQILLDDTAQGGSFRTDDGLLTSIT--GRSFPVSCVLAPIVQENR 183

Query: 553 --CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
                L   DI E KQ ++   H + +  ++ +   +    
Sbjct: 184 SAGAVLVFRDIMERKQTEDIRRHTESLLRRQQTTLLELTRN 224


>gi|325103345|ref|YP_004272999.1| multi-sensor hybrid histidine kinase [Pedobacter saltans DSM 12145]
 gi|324972193|gb|ADY51177.1| multi-sensor hybrid histidine kinase [Pedobacter saltans DSM 12145]
          Length = 1304

 Score =  368 bits (946), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 142/737 (19%), Positives = 268/737 (36%), Gaps = 40/737 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D+   LKEI+    + +G      +G  L D+       P   +  L+         TT
Sbjct: 189 LDSQFLLKEINPAFSEGLGISRSAALGKSLLDILQDKDHTPEGLLKKLIGTTQGIQLVTT 248

Query: 149 LWPIEG---TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
                G   T  +     +A      N E      F        + + +   +  +++F 
Sbjct: 249 TQKENGKKTTIDWHFKYDSA------NGEI-----FAFGRNTTKELEEKLKLENSERRFR 297

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
           +  E   G  S+     +I +       +      +V  L          +   +  L  
Sbjct: 298 NFFENAIGLMSMHDMDGNIIAVNEKGRDILHYTAEEVKKLNLRQLVPPHHIPLLESYLER 357

Query: 264 SEESSLPEQEDFHTI--NLNQYTKKQYF--GTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
              +                 Y          L+         L+  +   L       +
Sbjct: 358 IARNKEDSDMMVLQTKDGTPIYWLYHNMLETDLEGKPYVVSTALNMTDRIQLEHDLLHTK 417

Query: 320 NLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
            +  +T     +  +      N  Y +    ++   K  D +          +    S  
Sbjct: 418 QILEQTNAVAQVGGWEVDLEKNKVYWSDPTKIIHGVK-KDFVPDLDSAIGFFEPE--SKK 474

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
              +         T      RL   +     S+ +      +  +  +     GI  +  
Sbjct: 475 KVREIFEQAVVKGTSYDIELRL---RKQDGESIWVRVKGVPEF-EEGKCKRVFGIIQDIN 530

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
            ++    ++E +   L + +      +A+ +R+   +  +    + F     D+L + F 
Sbjct: 531 QSKTLYLELERKEAMLQAFVNYVPASVAMFDRDFNYVFVSNQWIEDFHQGKADLLNRNFF 590

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL-- 556
                        Y   +     + T E I++G   E +  +  +    L       +  
Sbjct: 591 ELFPHIPQERKKIYKEALEGKPYKNTNEIISVGGISEPQHFNWEVRPWHLRDGGIGGIII 650

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
              +ISE  +   +L  AK  A+  S  KS+FLA +SHEIRTPL  +IGFS+++      
Sbjct: 651 FTQNISESVKVNEELKKAKTFADLASKAKSEFLANMSHEIRTPLNGVIGFSDLLLKTPL- 709

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
              N    +Y NYI+ SGN +L I+ND+LD SKIE+GK+ L  +  ++ +  ++ I++V 
Sbjct: 710 ---NETQKQYLNYINESGNSLLSIINDILDFSKIEAGKLELFIDKFNIYDIANQVINIVL 766

Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIST----TH 731
             A  K + +  +    +P  I  D   +KQ+ +N+L NA+ FT  G +I +      ++
Sbjct: 767 YQAQRKDVELLLNIEQGLPSSIWVDESRIKQVLINLLGNAVKFTEHG-EIELKIEKLSSY 825

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
                +   VRDTG+G+   + ++  + F Q  +S   R  GTGLGL ++  +++    K
Sbjct: 826 NDKITLRFSVRDTGIGIPKDKQQRIFEAFTQEDSSVSKRYGGTGLGLTISNNLLNYMKSK 885

Query: 792 FYIFSTPAKGTLIEIIF 808
             + S P KG++     
Sbjct: 886 LQLKSEPGKGSIFYFDL 902



 Score = 39.6 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 15/113 (13%), Positives = 38/113 (33%), Gaps = 3/113 (2%)

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
           E      I+  + + I +++ + ++   N A S+  G      L K     L+       
Sbjct: 171 EAEYFSEIVRLSKNMICVLDSQFLLKEINPAFSEGLGISRSAALGKSLLDILQDKDH-TP 229

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
              L +++     Q ++ +T    +  K  ++    K    +        + +
Sbjct: 230 EGLLKKLI--GTTQGIQLVTTTQKENGKKTTIDWHFKYDSANGEIFAFGRNTT 280


>gi|300867587|ref|ZP_07112236.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300334394|emb|CBN57406.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 780

 Score =  368 bits (946), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 108/535 (20%), Positives = 192/535 (35%), Gaps = 30/535 (5%)

Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPS 347
                   +      +                    T D        + S G++   N +
Sbjct: 108 LAQPVEPIELVATVNALLRTRKAEEAARLLAREWQTTFDAIADLVCLLDSDGSIVRCNCA 167

Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
              L      +     G     L    +        +   R          R        
Sbjct: 168 ARELWGKSESEI---KGCFYQDLIQDTIGATEVNLFIR-ARETGRRQNLELRF------G 217

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD-GIA 466
           +   ++T  P               I  +  D +  +        +   +L+   D  I 
Sbjct: 218 DRWFSVTADPILGDR--GNFAGAVWIVADITDRKQAESAQRETEERFRLLLDNAQDYAIF 275

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
            ++ +G I+  +    ++ GY   + + +P ++       +     L  +         E
Sbjct: 276 FLDAQGYIIRWSVGAQRILGYEEAEAIGQPTSIIFTPEDLAAGTDKLE-LEQAVAAGQAE 334

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFS---SCYSLTMHDISEWKQEKNKL-------SHAKK 576
                  K+        I+  L        ++  M D +E KQ +++         +A+ 
Sbjct: 335 DERWHIRKDGSRFWASGILTSLQDEAGLRGFAKIMRDFTERKQAEDERAQLLIREQNART 394

Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
            AE  +  K +FLA +SHE+R+PL A++G+  ++  ++F      +       I+RS   
Sbjct: 395 QAETANRMKDEFLATLSHELRSPLNAMLGWLRLLNTRKFDEKTTAKA---METIERSARA 451

Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696
              +V DLLD+S+I  GK+ L+  PV L   +  A+  V+  A  K I ++T F +    
Sbjct: 452 QAQLVEDLLDVSRIIQGKVRLNVRPVELVTVIEAALDTVRPAAEAKEIRLQTIFDSTGGL 511

Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKA 756
           +  D   ++QI  N+LSNA+ FT  GGQ+ +      N  V + VRDTG+G+    L   
Sbjct: 512 VAGDSDRLQQIVWNLLSNAVKFTLKGGQVQVYLERV-NSHVEISVRDTGLGIKPDFLPFV 570

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFPL 810
              F Q  +S      G G+GL + + +V+ + G     S    KG    I  PL
Sbjct: 571 FDRFRQADSSIARTYTGLGIGLAIVRHLVELHGGSVRAQSEGEGKGATFTIKLPL 625



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/286 (11%), Positives = 74/286 (25%), Gaps = 10/286 (3%)

Query: 55  TDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI 114
            D      + +   ++E  F            + +DA GY+   S    + +G    + I
Sbjct: 243 ADITDRKQAESAQRETEERFRLLLDNAQDYAIFFLDAQGYIIRWSVGAQRILGYEEAEAI 302

Query: 115 GMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNRE 174
           G     +     +       +L +       +   W I               +      
Sbjct: 303 GQPTSIIFTPEDLAAGTDKLELEQAVAAGQAEDERWHIRKDGSRFWASGILTSLQDEA-- 360

Query: 175 FSGFRGFG-IVHVNRVDNDPR-ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP 232
             G RGF  I+              + L ++ +   + +  +   ++    +  +   P 
Sbjct: 361 --GLRGFAKIMRDFTERKQAEDERAQLLIREQNARTQAETANRMKDEFLATLSHELRSPL 418

Query: 233 HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE----DFHTINLNQYTKKQY 288
           +  +       T  +  K      E        ++ L E            +    +   
Sbjct: 419 NAMLGWLRLLNTRKFDEKTTAKAMETIERSARAQAQLVEDLLDVSRIIQGKVRLNVRPVE 478

Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF 334
             T+   + ++    +      L   FD    L     D+     +
Sbjct: 479 LVTVIEAALDTVRPAAEAKEIRLQTIFDSTGGLVAGDSDRLQQIVW 524


>gi|163760978|ref|ZP_02168056.1| two component sensor kinase/response regulator hybrid [Hoeflea
           phototrophica DFL-43]
 gi|162281759|gb|EDQ32052.1| two component sensor kinase/response regulator hybrid [Hoeflea
           phototrophica DFL-43]
          Length = 1337

 Score =  368 bits (946), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 138/817 (16%), Positives = 269/817 (32%), Gaps = 70/817 (8%)

Query: 41  KENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNI--------DAH 92
            + P H +        + Q         ++E+          VR  ++         DA+
Sbjct: 203 AQEPAHVTAAAEPLQARPQP-PVGVEQSNNESDL-----LAPVRDIFDAMDVGIVIYDAN 256

Query: 93  GYLKEISEELPKTIGNYAFKMIGMRLCDVS--DILHIDPNNHIGDLLKRQNTWYGKTTLW 150
             L  ++  +           +G  L D+        +  + +         W       
Sbjct: 257 DVLIYVNPAMDALTAPDYRLEVGTALPDLLQKTCHIKESEDPVARA-----AWIENRLSV 311

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD---KKFSHL 207
             +  +  V        +   NR+       G+           AL +      + F  +
Sbjct: 312 HRQFGSATVERLTNGRWLRLTNRQLDNGCTLGLRIDVTELKQREALLETHAAQNELFRAI 371

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
            +     S V+ E             L       +    ++    D              
Sbjct: 372 LDEMPVSSFVKDEDLRYVYVNRAHRKLTGLTPEDMLGKDDFRIFGDQGQALRDVDTSVMS 431

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG------- 318
            + L E E        +  +         +       L      S     +E        
Sbjct: 432 GNGLVECEIELNATDGRPLQLIDRKVPFTDPSGQRFLLGTTIDVSERKRREEEVFEARRL 491

Query: 319 ----ENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
                +     ++   +   V     ++   N +F  +       D+  A     +    
Sbjct: 492 AEIHRDDLESILETMHMGVIVLDKNLDVKLINSAFYRIWNVDQDRDLTNASFKEVIELNR 551

Query: 374 K---LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
                   +      +           A           +L  +     +  +       
Sbjct: 552 YNNIYDVPDNDFDKYIETRLSEISGGFAAPREFSRADGKTLIYSVRSLSEGKRMVTYFDV 611

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490
             ++  + +  + + + E     L     A + G+ ++     I  +N+A  ++   P E
Sbjct: 612 TELKQREHERDLARAEGERANEILRDAASAMAQGLLVV-ENNRIQFSNKAFCEILDLPQE 670

Query: 491 -----DILRKPFTVFLE------QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
                ++  +                 S     +   +       +E+     + + + L
Sbjct: 671 LVKPGELADRYLDYCEARGDFGEGEKASESREKIRRTIENGKPYAVER----KSAKNRWL 726

Query: 540 SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
            +   +     S+    T  DI+  KQ + +L      AE     KS+FLA +SHEIRTP
Sbjct: 727 KVDAKVG---SSNAIIATFSDITATKQREAELHDLLGKAETADRAKSEFLANMSHEIRTP 783

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           +  ++G +E++           R   +A+ I +SG  +L I+ND+LD SKI++G++ L  
Sbjct: 784 MNGVLGMAELLSRTELDT----RQRTFADIIVKSGTALLTIINDILDFSKIDAGQLTLES 839

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
           +P  L EA+ +  +L+   A EK I +       +P  ++ D+  ++Q+  N++ NAI F
Sbjct: 840 QPFDLREAIEDVATLISSRAAEKDIELIVRIDPALPDCLVGDVGRIRQVMTNLVGNAIKF 899

Query: 719 TPSGGQ-IIISTTHTSNEEV--ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T +G   I ++ +  S   V   LRV DTG+G+   +L+     F Q+  S   R EGTG
Sbjct: 900 TETGHVLIEVTGSPASEGSVDLTLRVHDTGIGIPPEKLDAVFDKFSQVDTSSTRRHEGTG 959

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLI--EIIFPL 810
           LGL +   +V    G     STP +G++   +I  P+
Sbjct: 960 LGLAITSRLVALMDGTISAESTPGEGSVFCVKITMPV 996



 Score =  112 bits (280), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 69/500 (13%), Positives = 144/500 (28%), Gaps = 44/500 (8%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D+      ++    +     A  +IG +  +  D +  +  +      +R++  +GK  +
Sbjct: 28  DSELRYIAVNAAYAEMWDCEAETLIGQKSHECFDSVEQNDRDEK----ERRSLVFGKDQV 83

Query: 150 WPIEGTNLYVPIDLAALPIYSRNRE---FSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                    V   +        + +      F     V      +   A           
Sbjct: 84  ALFAHPLKDVRYRIRVQRQRQEDGKTFIVGHFEPIAGVRFETGRSADPAAAHEAQATSQR 143

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
               +  H   +     I +   P   +   ++V + +++           K       E
Sbjct: 144 DLAQRGHH---DLLLAAIEAAAVPMLVVDADDQVIAASKH----------SKTATGPWLE 190

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
           + LP       +             LQ   +         N   L A          +  
Sbjct: 191 TLLPGGGKMRHVAQEPAHVTAAAEPLQARPQPPVGVEQSNNESDLLAPV-------RDIF 243

Query: 327 DKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
           D   +   +Y     L Y NP+   LT   + D     G     L         +  PV 
Sbjct: 244 DAMDVGIVIYDANDVLIYVNPAMDALT---APDYRLEVGTALPDLLQKTCHIKESEDPVA 300

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
                   ++   +  +    R              N+  +N    G+  +  + +  + 
Sbjct: 301 RAAWIENRLSVHRQFGSATVER----LTNGRWLRLTNRQLDNGCTLGLRIDVTELKQREA 356

Query: 446 KME---IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            +E    +     +IL+       + + +   +  NRA  KL G   ED+L K       
Sbjct: 357 LLETHAAQNELFRAILDEMPVSSFVKDEDLRYVYVNRAHRKLTGLTPEDMLGKDDFRIF- 415

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---YSLTMH 559
            +    +    T ++S +    +E     +  + + L L          S       T  
Sbjct: 416 GDQGQALRDVDTSVMSGN--GLVECEIELNATDGRPLQLIDRKVPFTDPSGQRFLLGTTI 473

Query: 560 DISEWKQEKNKLSHAKKIAE 579
           D+SE K+ + ++  A+++AE
Sbjct: 474 DVSERKRREEEVFEARRLAE 493


>gi|186683715|ref|YP_001866911.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186466167|gb|ACC81968.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 1504

 Score =  368 bits (946), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 113/737 (15%), Positives = 239/737 (32%), Gaps = 42/737 (5%)

Query: 97   EISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGKTTLWPIEGT 155
             +++           + IG  LC++          +    +++        + ++  E  
Sbjct: 634  YVNDAACLNNQMTYEQQIGRGLCELLPSHRHSGLFDDYCQVVETGQALIKDSLVYEDEYG 693

Query: 156  NLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHS 215
               +      +  +       G           V        +R ++  + + +      
Sbjct: 694  EQRL------VKAFDIRVAKFGDGFVATWRDITVRQQTEEALRRSEEFKNRILDSSSDCI 747

Query: 216  SVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDF 275
             V      +    +    L   + ++S               +        +   E   F
Sbjct: 748  KVLSLDGRLLYMNTGGLCLMEIDDLNSYLNTEWLCFWSGSYRQQAEQALAATKAGEISIF 807

Query: 276  ----HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS----LSAYFDEGENLTPETVD 327
                 T+       +     + + S +    L      +          + E        
Sbjct: 808  SGYCPTVKSTPKWWEVVVSPILDASGQLERILLISRDITDRKKTELLLQQSEARLKLAYK 867

Query: 328  KCPIPFFVYSHGN-LFYANPSFLLLTKYKSVD-DIEIAGGLSTLLDAPKLSDNNAIKPVM 385
                  + +       + +  +  L  +      I     LS L    + S N  +   +
Sbjct: 868  ATRSGLWDWDIIRNSAHISEEYCHLFGFDPTTKSITYENWLSCLHPDDRTSTNETVNRTI 927

Query: 386  LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
              + +            +  +      +        +     +   G   +  + +  + 
Sbjct: 928  QQQQEG----YEDDFRILHPDG--IRWLAAKGQVFYDTVGNAVRMLGNVQDITERKQVEE 981

Query: 446  KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            ++     +   + E     +   N EG +L  N+   +  G  +E      +   +    
Sbjct: 982  ELRQSEERYRCLAELIPQLVWTANPEGRLLDVNQRWLEFTGLTLEQAHTSGWREVVHPED 1041

Query: 506  PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDI 561
              ++    ++ +        +        +                      +  +  DI
Sbjct: 1042 VLILVKEWSKAVQQGTS--YQAEGRMRRADGVYRWHLHQAIPQKDRQGEIVKWFGSATDI 1099

Query: 562  SEWKQEKNKL-------SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
               KQ + +          A+  AE+ +  K +FLA +SHE+R+PL  I+G+++++++++
Sbjct: 1100 EAQKQLEVERDRLFQLEQAARAEAERANRIKDEFLAILSHELRSPLNPILGWTKMLQSRK 1159

Query: 615  FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
            F      +  +    I+R+  L   +++DLLDI+KI  GK++L   PV+L   +  AI  
Sbjct: 1160 FNET---KTAQALASIERNVKLQTQLIDDLLDIAKILRGKLSLDVTPVNLLFVIESAIDT 1216

Query: 675  VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
            V   A  K I +      NI ++  D   ++QI  N+LSNAI FTP GG++ I       
Sbjct: 1217 VNTAAIAKSIQLHPVL-PNIGQVSGDSNRLQQIVWNLLSNAIKFTPKGGRVEIRLERVDE 1275

Query: 735  EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
             +  + V DTG G+    L    + F Q   S   +  G GLGL + + +V+A+ G    
Sbjct: 1276 -QAHIIVSDTGKGINPEFLPHIFESFRQEDVSITRKYGGLGLGLAIVRQLVEAHGGTITA 1334

Query: 795  FS-TPAKGTLIEIIFPL 810
             S     G    +  PL
Sbjct: 1335 DSPGEGLGATFTVQLPL 1351



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 29/329 (8%), Positives = 86/329 (26%), Gaps = 21/329 (6%)

Query: 275 FHTINLNQYTKKQYFGTLQNNSKESFEYLSHR----NHPSLSAYFDEGENLTPETVDKCP 330
            H     ++ +      L+  + +    L                 + E    ++ +   
Sbjct: 289 AHHCTSPRFWQPLEIDLLKELATQMSIALRQAELYQQAQHELKERQQVEAELCQSEEHLR 348

Query: 331 IPFFVYSHGNLFYANPSFLLLTKYKSVDDI--EIAGGLSTLLD--APKLSDNNAIKPVML 386
           +       G     N     +T   +++ +     G      +  A ++   +  + +  
Sbjct: 349 LALSASRMGTW-NWNIQTGKITWSDNLEALFGLQPGEFDGSFEMFAARVHPEDRDRVLAT 407

Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
                           + +                +Q  + M   GI+ +  + + +   
Sbjct: 408 VNRAVATGEEYDIEFRVVYPNGTIRWALSQGKVFYDQHGQPMQMAGIDIDVTERKRSAEA 467

Query: 447 MEIEVMQLCSILEATSDGIAIINR--EGIILSTNRAVSKLFGYPVEDIL--RKPFTVFLE 502
           +     +   + E   D +  I    E  +   + A  +L+G   E++   ++ +   + 
Sbjct: 468 LRESEERFRQLAENI-DAVFWIREVSENRVSYVSPAYERLWGLNSEELYQGQQSWIDRIH 526

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTM 558
                       E          ++       +  +  +      L   +     ++   
Sbjct: 527 PEDREATQKAFHEKAVAGK---FDEEYRVILPDGSIRWVHDRCFGLRDKTGEIYRFAGIA 583

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSD 587
            DIS  K     L  +++       +  D
Sbjct: 584 EDISARKHSLAALQESEERFRTSVENMLD 612



 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/153 (12%), Positives = 46/153 (30%), Gaps = 5/153 (3%)

Query: 85   FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH-IDPNNHIGDLLKRQNTW 143
              W  +  G L ++++   +  G    +       +V      +         +++  ++
Sbjct: 1000 LVWTANPEGRLLDVNQRWLEFTGLTLEQAHTSGWREVVHPEDVLILVKEWSKAVQQGTSY 1059

Query: 144  YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
              +  +   +G  +Y      A+P   R  E    + FG                RL + 
Sbjct: 1060 QAEGRMRRADG--VYRWHLHQAIPQKDRQGEIV--KWFGSATDIEAQKQLEVERDRLFQL 1115

Query: 204  FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM 236
                    +  + ++ E   I S +   P   +
Sbjct: 1116 EQAARAEAERANRIKDEFLAILSHELRSPLNPI 1148


>gi|239906492|ref|YP_002953233.1| putative two-component hybrid sensor and regulator [Desulfovibrio
            magneticus RS-1]
 gi|239796358|dbj|BAH75347.1| putative two-component hybrid sensor and regulator [Desulfovibrio
            magneticus RS-1]
          Length = 1452

 Score =  368 bits (946), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 114/784 (14%), Positives = 258/784 (32%), Gaps = 77/784 (9%)

Query: 89   IDAHGYLKEISEELPKTIGNYA-FKMIGMRLCDVSDI-----LHIDPNNHIGDLLKRQNT 142
            +D +G   +++ +    +G  A   ++G    D           ++        +     
Sbjct: 534  LDENGRFLDVNRKWLVALGYAAKDDVVGKWFGDFLAPGFKEHFDLNFPMFKQACVIDGVE 593

Query: 143  WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
            +         +G    + +        +    F   R   I              +  ++
Sbjct: 594  FEMV----RKDGDL--ISVTFNGRVQLNSEGHF--MRTHCIFTDITERKRAEDALRESEQ 645

Query: 203  KFSHLHEIKKGHSSVEKEKYDIFSQQSP---PPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
            ++  + +  +    +  E   I                  +    E +   +D+    + 
Sbjct: 646  RYRRIVDTAQEGIRISDECGRIVYLNQRMSDLLGYSQDQMLGRNIEDFLFPEDLEDHLRR 705

Query: 260  PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH----RNHPSLSAYF 315
                        ++     +           +L + +      L+      +        
Sbjct: 706  MEDRRRGCDDCYEKRLRRSDGTAVWTLVSVKSLPDATGRYDGSLAMFSDITDRKLAEEAL 765

Query: 316  DEGENLTPETVDKCPIP-------------------------FFVYSHGNLFYANPSFLL 350
             + +    + ++                               + Y   +  +   S+  
Sbjct: 766  RQEDARLRKLLEIIQYDTANTQSLLDFALSKCLELTGSRFGYIYHYDEDSQSFTLNSWSR 825

Query: 351  LTKYK----------SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400
                           ++    + G       A  ++D     P+     +      +   
Sbjct: 826  DVMQACSIANPQSCYALSKTGLWGEAVRQCRAIIVNDFLTDNPLKKGYPEGHAQLTNFLT 885

Query: 401  HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV----DTRINKRKMEIEVMQLCS 456
              I  + +  +A+  +  ++ +    ++ Q  +  +      + R  +  +     +L  
Sbjct: 886  VPI-LSNKRIVAVVGVANKQTDYMDSDVIQLSLLMDATWRVVERRQAEESLRKSDERLSL 944

Query: 457  ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL--RKPFTVFLEQNTPSVMNHYLT 514
             L A +DG+   +        +     + GY   +       +   L  +      H ++
Sbjct: 945  ALMAANDGMWDWDISSGTTYFSPRYYTMLGYHPGEFPSDFDTWKGLLHPDDVEHAIHTIS 1004

Query: 515  EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKL 571
            E L+      ++      + +   +  R  + +            T  DI+E K+ +  L
Sbjct: 1005 ESLNNSEGFEIDFRMRTKSGDWSWILGRGRVVETDAEGHAKRMVGTHVDINERKRSQADL 1064

Query: 572  SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
              AK  AE  +  KS+FLA +SHEIRTPL  I+G  ++++        N    EY     
Sbjct: 1065 LSAKVQAEAANKAKSEFLANMSHEIRTPLNGILGMLQLLQTTE----PNDEQKEYLAGAT 1120

Query: 632  RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
            RS   +  +++D+LDIS+IE+G+M++      + +       +    A  K +++   + 
Sbjct: 1121 RSTKRLTRLLSDILDISRIEAGRMDVVETEFDIYQLQDSIREIFDTDAQGKGLVLDFIWD 1180

Query: 692  NNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-----EVILRVRDTG 745
            + +P  ++ D   ++QI  N++ NAI FT  G ++++  +   +       V+L V DTG
Sbjct: 1181 DELPTALIGDEARLRQILFNLVGNAIKFTDKG-EVLVEASLLPSPNTSSVRVLLTVSDTG 1239

Query: 746  VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
            +G+    L+   +PF Q   S   R +G GLGL + + +     G   I S   +GT + 
Sbjct: 1240 IGICEEHLKYIFEPFVQAEISYTKRFQGAGLGLSIVRRLASLLGGDISIDSALGEGTTVY 1299

Query: 806  IIFP 809
            +  P
Sbjct: 1300 LSLP 1303



 Score =  146 bits (368), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 48/409 (11%), Positives = 108/409 (26%), Gaps = 21/409 (5%)

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLT 244
                   AL +        L          +  +            L    +       
Sbjct: 378 VSRRKRAEALYQGQLNFVETLMRAMPAPLFYKDIQGRYLGVNPAFETLMGKPEQDFVGRL 437

Query: 245 EYYAHKDDVLKTEKYPL-----LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
                  +  +           L   +           +     TK  + G   + +   
Sbjct: 438 PTETFPQEHGQVFVQRDQELSNLGDMQRYQHVMPTALGLRTLMVTKAVFPGKDGSPAGVV 497

Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVD 358
                  +         E E       +  P+ +  +  +G     N  +L+   Y + D
Sbjct: 498 GILDDITDRIRNEESLRESEKRFRSLFENAPLAYQSLDENGRFLDVNRKWLVALGYAAKD 557

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
           D+           AP   ++  +   M  ++             +     + +++TF   
Sbjct: 558 DVVGKWFGD--FLAPGFKEHFDLNFPMFKQA----CVIDGVEFEMVRKDGDLISVTFNGR 611

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
            + N     M  + I  +  + +  +  +     +   I++   +GI I +  G I+  N
Sbjct: 612 VQLNSEGHFMRTHCIFTDITERKRAEDALRESEQRYRRIVDTAQEGIRISDECGRIVYLN 671

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
           + +S L GY  + +L +    FL       +  +L  +                  +   
Sbjct: 672 QRMSDLLGYSQDQMLGRNIEDFLFPED---LEDHLRRMEDRRRGCDDCYEKRLRRSDGTA 728

Query: 539 LSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
           +   + +K LP +            DI++ K  +  L        K   
Sbjct: 729 VWTLVSVKSLPDATGRYDGSLAMFSDITDRKLAEEALRQEDARLRKLLE 777



 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 40/391 (10%), Positives = 86/391 (21%), Gaps = 23/391 (5%)

Query: 79  IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK 138
                   +  D  G    ++      +G      +G    +     H          L 
Sbjct: 400 RAMPAPLFYK-DIQGRYLGVNPAFETLMGKPEQDFVGRLPTETFPQEHGQVFVQRDQELS 458

Query: 139 RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
                     + P       + +  A  P   ++   +G    GI+             +
Sbjct: 459 NLGDMQRYQHVMPTALGLRTLMVTKAVFP--GKDGSPAGV--VGILDDITDRIRNEESLR 514

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP---PPHLRMKNKVSS--LTEYYAHKDDV 253
             +K+F  L E          E                   K+ V      ++ A     
Sbjct: 515 ESEKRFRSLFENAPLAYQSLDENGRFLDVNRKWLVALGYAAKDDVVGKWFGDFLAPGFKE 574

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY----LSHRNHP 309
                +P+          + +    + +  +         N+                  
Sbjct: 575 HFDLNFPMFKQACVIDGVEFEMVRKDGDLISVTFNGRVQLNSEGHFMRTHCIFTDITERK 634

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
                  E E      VD       +    G + Y N     L  Y     +     +  
Sbjct: 635 RAEDALRESEQRYRRIVDTAQEGIRISDECGRIVYLNQRMSDLLGYSQDQMLGRN--IED 692

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
            L    L D+           D            ++ +   ++          +      
Sbjct: 693 FLFPEDLEDHLRRMEDRRRGCD------DCYEKRLRRSDGTAVWTLVSVKSLPDATGRYD 746

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459
               +  +  D ++ +  +  E  +L  +LE
Sbjct: 747 GSLAMFSDITDRKLAEEALRQEDARLRKLLE 777



 Score = 68.1 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 22/165 (13%), Positives = 55/165 (33%), Gaps = 1/165 (0%)

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
                  A      +    +       +  +   + ++  + +++ A    +   + +G 
Sbjct: 355 VLFLTGGAVGLCLLLLSIFLALNVSRRKRAEALYQGQLNFVETLMRAMPAPLFYKDIQGR 414

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
            L  N A   L G P +D + +  T    Q    V      E+ +L   Q  + +   + 
Sbjct: 415 YLGVNPAFETLMGKPEQDFVGRLPTETFPQEHGQVFVQRDQELSNLGDMQRYQHVMPTAL 474

Query: 534 KEEKL-LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI 577
               L ++  +   K    +     + DI++  + +  L  ++K 
Sbjct: 475 GLRTLMVTKAVFPGKDGSPAGVVGILDDITDRIRNEESLRESEKR 519


>gi|157963514|ref|YP_001503548.1| PAS/PAC sensor hybrid histidine kinase [Shewanella pealeana ATCC
           700345]
 gi|157848514|gb|ABV89013.1| PAS/PAC sensor hybrid histidine kinase [Shewanella pealeana ATCC
           700345]
          Length = 1234

 Score =  368 bits (946), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 119/594 (20%), Positives = 204/594 (34%), Gaps = 46/594 (7%)

Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291
           P  R+   +   +       + +     P          E               +    
Sbjct: 381 PASRLLTHLEECSAEPIKPPEKITVGWAPWFQLVSRIFEEN------KQYTRHLAEQNRR 434

Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLL 350
           L     +  E L          Y      L    +D  P    F    G     N S   
Sbjct: 435 LDKLVAQRTERLKDTTERREQEYV-----LLRSLLDSIPEAIVFKDKEGRYLGCNKSAER 489

Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
           +  +   + I        L    + +   A    +L             L          
Sbjct: 490 MLGFSESEMIGQFS--DALTADEQSARIRAEDERVLTERTPLRYQEKVELA------GKP 541

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA--II 468
           + +  +     N+  E +    +  +      +  ++ +   +    ++A  D +    +
Sbjct: 542 VLLDTLKIPFYNRRGELLGLIAVWRDVTREYESAEQLRLSEERYHLAMDAVEDVLWDWYL 601

Query: 469 NREGIILSTNRAVSKLFGYPVED--ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
           + E II   N A   + GY V +   L       +  +    +  Y  + L+  +    +
Sbjct: 602 DSEQII--CNPAYYSMLGYKVNEFPALVSTIDELIHPDDRIRVEEYREQYLANPV-GAFD 658

Query: 527 KITLGSTKEEKLLSLR-----IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE 581
                  K      L      +             T  DI+  K+ +  +  AK+ AE  
Sbjct: 659 IEFRMLGKSGGYHWLLSRGRVVEYTPNNQPKRMLGTHKDITRHKRNEVAMLEAKQDAEMA 718

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
           + +KS+FLA +SHEIRTP+ AIIG  ++ +     P    +  +Y      S + +L I+
Sbjct: 719 NLYKSEFLANMSHEIRTPMNAIIGMLQLAQRTSLTP----QQKDYLEKAGFSAHSLLRII 774

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-AD 700
           ND+LD SKIE+GK+ L      LD+ +  A+ L  L A EK + +          IL  D
Sbjct: 775 NDILDFSKIEAGKLELERVAFPLDKVLDHALDLNALKAQEKGVELLLYAPVTAGLILEGD 834

Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE------VILRVRDTGVGMTNYELE 754
              + Q+ +N+LSNA+ FT SG    I        E      +   +RDTG+G++  +  
Sbjct: 835 PLRLGQVLINLLSNAVKFTQSG---EIELGCEDVGERDHRITLKFWIRDTGIGISKEQQA 891

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
                F Q   S   +  GTGLGL ++K +V    G   + S  + G+      
Sbjct: 892 TLFDAFAQADGSTTRKYGGTGLGLSISKHLVSLMGGTMQVESEMSVGSTFSFTI 945



 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/305 (10%), Positives = 80/305 (26%), Gaps = 21/305 (6%)

Query: 79  IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK 138
                   +  D  G     ++   + +G    +MIG      SD L  D  +       
Sbjct: 465 DSIPEAIVFK-DKEGRYLGCNKSAERMLGFSESEMIGQ----FSDALTADEQSARIRAED 519

Query: 139 RQNTWYGKTTLWPIEGTNLYVPIDLAAL--PIYSRNREFSGFRGFGIVHVNRVDNDPRAL 196
            +         +  +      P+ L  L  P Y+R  E  G     +      + +    
Sbjct: 520 ERVLTERTPLRYQEKVELAGKPVLLDTLKIPFYNRRGELLGL--IAVWRDVTREYESAEQ 577

Query: 197 GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH-----LRMKNKVSSLTEYYAHKD 251
            +  ++++    +  +          +               +     + S  +   H D
Sbjct: 578 LRLSEERYHLAMDAVEDVLWDWYLDSEQIICNPAYYSMLGYKVNEFPALVSTIDELIHPD 637

Query: 252 DVLKTEKYPL--LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
           D ++ E+Y    L +   +   +      +   +         +    E       +   
Sbjct: 638 DRIRVEEYREQYLANPVGAFDIEFRMLGKSGGYHWL-----LSRGRVVEYTPNNQPKRML 692

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
                    +      ++          + + F AN S  + T   ++  +      ++L
Sbjct: 693 GTHKDITRHKRNEVAMLEAKQDAEMANLYKSEFLANMSHEIRTPMNAIIGMLQLAQRTSL 752

Query: 370 LDAPK 374
               K
Sbjct: 753 TPQQK 757


>gi|325920495|ref|ZP_08182421.1| PAS domain S-box [Xanthomonas gardneri ATCC 19865]
 gi|325549022|gb|EGD19950.1| PAS domain S-box [Xanthomonas gardneri ATCC 19865]
          Length = 1364

 Score =  368 bits (946), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 129/731 (17%), Positives = 261/731 (35%), Gaps = 65/731 (8%)

Query: 139 RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFR-----GFGIV----HVNRV 189
             N   G             +    +  PI +      G+R     GF ++         
Sbjct: 160 SGNRPLGLDIASEPRRRAAALQASRSGEPIMTSPVSLLGYRIPSESGFLVLLAVYREGMP 219

Query: 190 DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDI-FSQQSPPPHLRMKNKVSSLTEYYA 248
              P+               +++   S   E+ D+               +  + +   A
Sbjct: 220 LQTPQQRMLATTGWVYAPFSVEQMVQSTLGERDDVALDLSDRNEPTHTFYRSGTPSSDSA 279

Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
            +  +++       T   ++ P      +++              +    +  +L   N 
Sbjct: 280 RRPPIVQLLPIYGRTWIITAHPTASFLASLHQTSPWLMGSLVMGGSVLFAALLWLYFSNG 339

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
                   +   L     +           G + + NP+   +  Y S + I     L+T
Sbjct: 340 LRREEVLRKQMELAALVSNSSEAIVAETPDGRITHWNPAAETMFGYSSEEAIGRT--LAT 397

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
           LL     +      P      D      ++    ++    +++ +               
Sbjct: 398 LLLPQPYAVPEVEHP------DEPHPVMTSAAQIMRHRDSHAVYLLASKAPILEGDDTLT 451

Query: 429 PQNGIEPEDVDTRINKRK-------MEIEVMQ-----------LCSILEATSDGIAIINR 470
             +    +  +   + ++       +E +V +             +IL      I   + 
Sbjct: 452 GHSHFFRDISERVRSHQRIVELNASLEHQVAERTSELVKFSALQRAILAHAGYAIIATDS 511

Query: 471 EGIILSTNRAVSKLFGYPVEDILRKP-FTVFLEQNTPSVMNHYLTEILSLDLRQTLEK-- 527
            G +   N A  KL GY  E+++ +   + F+E          L +     + QTLE   
Sbjct: 512 SGFVTLFNPAAEKLLGYKAEEVIGRRKASQFIEPEELQERARMLADQTGTPVAQTLEAVA 571

Query: 528 -----------ITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLS 572
                           + E + L + + +  L   +     Y     D++E K  + +L 
Sbjct: 572 ALTSLGRSDTSEWTYVSHEGRHLPVLLTLSTLRDDNDQVIGYLGVAVDLTEQKLHEKQLR 631

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
            A   A+  +  KSDFLA +SHEIRTP+ AI+G   +++            ++    IDR
Sbjct: 632 LAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSELPVAA----LDMVAKIDR 687

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS-FA 691
           S   +L+I+ND+LD SKIE+G+++L   P  L++       L++   + K + +      
Sbjct: 688 SARSLLEIINDILDFSKIEAGRIDLERAPFDLNQLFDNIADLMRSSLSAKPVEMIVEPLP 747

Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-----VILRVRDTGV 746
            +   +L D   + Q+ +N++ NAI FT  G ++++S     + +     ++  VRDTG+
Sbjct: 748 RDSRWLLGDALRINQVLVNLVGNAIKFTEQG-EVVLSVRRFPSGDPNKLKLLFSVRDTGI 806

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G++  +      PF Q   S   R  G+GLGL +++ +++   G+  + S P +G+    
Sbjct: 807 GISKEKQSLIFSPFLQADTSTSRRYGGSGLGLTISRRLIELMGGELEVESVPGRGSEFYF 866

Query: 807 IFPLYDTSHPH 817
           +  L  ++ P 
Sbjct: 867 VVTLEKSAPPQ 877



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 59/440 (13%), Positives = 127/440 (28%), Gaps = 51/440 (11%)

Query: 169 YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228
              +REF G  G+G +H  RV     A   +  +        ++  +  + E++ +   +
Sbjct: 99  RDYSREFPGVLGYGYIH--RVAPADEAAFLQAARADGAPDIHRRPLAPWDGERFMVLYFE 156

Query: 229 SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288
                 R      +                 P++TS  S L  +    +  L      + 
Sbjct: 157 PESSGNRPLGLDIASEPRRRAAALQASRSGEPIMTSPVSLLGYRIPSESGFLVLLAVYRE 216

Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSF 348
              LQ   +                                    +VY+  ++     S 
Sbjct: 217 GMPLQTPQQRMLATTG-----------------------------WVYAPFSVEQMVQST 247

Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP--VMLYRSDRTCIAASARLHTIQWN 406
           L      ++D  +      T   +   S ++A +P  V L          +A        
Sbjct: 248 LGERDDVALDLSDRNEPTHTFYRSGTPSSDSARRPPIVQLLPIYGRTWIITAHPTASFLA 307

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
              SL  T      +     ++    +        + + ++  + M+L +++  +S+ I 
Sbjct: 308 ---SLHQTSPWLMGSLVMGGSVLFAALLWLYFSNGLRREEVLRKQMELAALVSNSSEAIV 364

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
               +G I   N A   +FGY  E+ + +     L           +          T  
Sbjct: 365 AETPDGRITHWNPAAETMFGYSSEEAIGRTLATLLLP--QPYAVPEVEHPDEPHPVMTSA 422

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKES 582
              +   ++   + L      +         +S    DISE  +   ++       E + 
Sbjct: 423 AQIM-RHRDSHAVYLLASKAPILEGDDTLTGHSHFFRDISERVRSHQRIVELNASLEHQV 481

Query: 583 SHKSDFL--------ARVSH 594
           + ++  L        A ++H
Sbjct: 482 AERTSELVKFSALQRAILAH 501



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/386 (9%), Positives = 88/386 (22%), Gaps = 34/386 (8%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLC-----------DVSDILHIDPNNHIGDLLKR 139
             G +   +       G  + + IG  L            +V       P       + R
Sbjct: 368 PDGRITHWNPAAETMFGYSSEEAIGRTLATLLLPQPYAVPEVEHPDEPHPVMTSAAQIMR 427

Query: 140 QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199
                           +  V +  +  PI   +   +G   F                  
Sbjct: 428 HR-------------DSHAVYLLASKAPILEGDDTLTGHSHF--FRDISERVRSHQRIVE 472

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
           L+    H  ++ +  S + K      +  +   +  +    S     +    + L   K 
Sbjct: 473 LNASLEH--QVAERTSELVKFSALQRAILAHAGYAIIATDSSGFVTLFNPAAEKLLGYKA 530

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
             +     +    E        +    Q    +    +      S     +    +   E
Sbjct: 531 EEVIGRRKASQFIEPEELQERARMLADQTGTPVAQTLEAVAALTSLGRSDTSEWTYVSHE 590

Query: 320 NLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
                 +           +  +       + LT       +        +  A   + + 
Sbjct: 591 GRHLPVLLTLST--LRDDNDQVIGYLGVAVDLT----EQKLHEKQLRLAMDAAKSANQSK 644

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
           +     +    RT + A   +  +    E  +A   +  +        +       +   
Sbjct: 645 SDFLANMSHEIRTPMNAILGMLYLLQRSELPVAALDMVAKIDRSARSLLEIINDILDFSK 704

Query: 440 TRINKRKMEIEVMQLCSILEATSDGI 465
               +  +E     L  + +  +D +
Sbjct: 705 IEAGRIDLERAPFDLNQLFDNIADLM 730



 Score = 54.6 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 25/284 (8%), Positives = 67/284 (23%), Gaps = 25/284 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMR-LCDVSDILHIDPNNH---------IGDLLK 138
            D+ G++   +    K +G  A ++IG R      +   +              +   L+
Sbjct: 509 TDSSGFVTLFNPAAEKLLGYKAEEVIGRRKASQFIEPEELQERARMLADQTGTPVAQTLE 568

Query: 139 RQNTW----YGKTTLW-PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193
                       T+ W  +     ++P+ L    +   N +  G+ G  +          
Sbjct: 569 AVAALTSLGRSDTSEWTYVSHEGRHLPVLLTLSTLRDDNDQVIGYLGVAV--DLTEQKLH 626

Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253
               +         ++ K    +    +              ++     +          
Sbjct: 627 EKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSELPVAALDMVAKID 686

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ-------YFGTLQNNSKESFEYLSHR 306
                   + ++     + E    I+L +                  + S +  E +   
Sbjct: 687 RSARSLLEIINDILDFSKIEAGR-IDLERAPFDLNQLFDNIADLMRSSLSAKPVEMIVEP 745

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLL 350
                     +   +    V+           G +  +   F  
Sbjct: 746 LPRDSRWLLGDALRINQVLVNLVGNAIKFTEQGEVVLSVRRFPS 789


>gi|228999368|ref|ZP_04158947.1| hypothetical protein bmyco0003_39230 [Bacillus mycoides Rock3-17]
 gi|228760313|gb|EEM09280.1| hypothetical protein bmyco0003_39230 [Bacillus mycoides Rock3-17]
          Length = 558

 Score =  368 bits (946), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 94/391 (24%), Positives = 184/391 (47%), Gaps = 26/391 (6%)

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           +           +   + +  +E E    +L +++E    G+ +I+  G I   NR+  +
Sbjct: 187 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYISLVNRSYKE 246

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542
           +F    E+ L + +         + +   + EI   +++   + +  LG  ++   +   
Sbjct: 247 IFHVTDEEYLDRLYYEAFLH---AEIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 303

Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
            II          L  HDI+E K+ +                + DFLA VSHE++TP+T+
Sbjct: 304 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 349

Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           I GFSE + +   G + N ++ E + N I +    +  ++ DLLD+SKIE     L+   
Sbjct: 350 IKGFSETLLD---GAMENQQFCEHFLNIILKESERMQGLIEDLLDLSKIEQQGFKLNMGT 406

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           V + E + E   +++  + +K I ++     ++  ++ D   +KQI +N+++NAI +TP+
Sbjct: 407 VEMKELLGEIKMVLENKSQDKEISLQVDVLRHV-SVIGDPSRLKQIFINLVNNAIVYTPA 465

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           GG + +           ++V DTG+G++  E+ +  + F ++  ++     GTGLGL + 
Sbjct: 466 GGTVSVEL-LEDEHNAYIKVSDTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIV 524

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
           K +V+A+ G   + S   +GT   +  P  D
Sbjct: 525 KHLVEAHHGTVTVESEVGEGTTFTVALPKSD 555


>gi|296133627|ref|YP_003640874.1| multi-sensor signal transduction histidine kinase [Thermincola sp.
           JR]
 gi|296032205|gb|ADG82973.1| multi-sensor signal transduction histidine kinase [Thermincola
           potens JR]
          Length = 587

 Score =  368 bits (946), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 95/544 (17%), Positives = 210/544 (38%), Gaps = 37/544 (6%)

Query: 272 QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN---LTPETVDK 328
            E  +          +    + ++ ++  +  +H N P      +E          T+ +
Sbjct: 73  DEAKNIAAARVTLIDKNGTVIGDSHEDYRKMANHANRPEFIQALNETVGKSVRFSATLGE 132

Query: 329 --CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
               +   V  HG +  A    +   + ++          + +     L+   +      
Sbjct: 133 KELYVAVPVKRHGRVAGAVRLAIPWREVQAGVWHIRWIIGTAIFIVFVLTVTISSSLAR- 191

Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
                   A    +  +           ++     ++              +   I  ++
Sbjct: 192 -----EITAPLKEMTEVAKEMAEGKLDNYVRVVSDDEVGALGRGLNYMARRLKDTI--KE 244

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
           +  E  ++ +IL +  +G+  ++++  IL  N A  K+F    + ++       +E    
Sbjct: 245 ITEEKNKIQAILTSMVEGVIAVDKDTRILLVNPAFEKIFNVVADQVIGLTV---IEGIRN 301

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII-KKLPFSSCYSLTMHDISEWK 565
             +   L + L        E   +      +   + ++   +            DI+E +
Sbjct: 302 YELEKILLKALKKGRTINQEIEIVPLR---RAFRVNVVPLMRKEKIVGVVAVFRDITEIR 358

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + +                +S+F+A VSHE+RTPLT+I GF E + +             
Sbjct: 359 ELE--------------KMRSEFVANVSHELRTPLTSIKGFVETLLDGAM--EDREVARR 402

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           +   I+   N +  ++ND+L +S IE+    +   PV+ +E V + + ++   A EK I 
Sbjct: 403 FLEIINVETNRLSRLINDILSLSSIEAKNKEISRSPVNFNEIVEKVLPILVPMAEEKNIT 462

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           + T    ++P I+A+   +KQ+ +N++ NAI +TP  G++++S T +    + + V+DTG
Sbjct: 463 VETDIHPDLPVIMANEDLIKQVLINLVDNAIKYTPENGRVVLSATPS-GGGLKVSVKDTG 521

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+    + +  + F ++  ++     GTGLGL + K  ++A+ G   + S    G+   
Sbjct: 522 IGIPPESMSRLFERFYRVDKARSRELGGTGLGLAIVKHALEAHGGTIKVESQVGMGSKFT 581

Query: 806 IIFP 809
              P
Sbjct: 582 FYLP 585



 Score = 40.4 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 27/241 (11%), Positives = 71/241 (29%), Gaps = 14/241 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D    +  ++    K     A ++IG+ + +      ++    +   LK+  T   +  
Sbjct: 266 VDKDTRILLVNPAFEKIFNVVADQVIGLTVIEGIRNYELEK--ILLKALKKGRTINQEIE 323

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           + P     L     +  +P+  +  +  G     +        +      R +   +  H
Sbjct: 324 IVP-----LRRAFRVNVVPLMRKE-KIVGV--VAVFRDITEIRELEK--MRSEFVANVSH 373

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           E++   +S++     +           +  +   +     ++   L  +   L + E  +
Sbjct: 374 ELRTPLTSIKGFVETLLDG--AMEDREVARRFLEIINVETNRLSRLINDILSLSSIEAKN 431

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
                     N            +      + E   H + P + A  D  + +    VD 
Sbjct: 432 KEISRSPVNFNEIVEKVLPILVPMAEEKNITVETDIHPDLPVIMANEDLIKQVLINLVDN 491

Query: 329 C 329
            
Sbjct: 492 A 492


>gi|326942371|gb|AEA18267.1| phosphate regulon sensor protein phoR [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 587

 Score =  368 bits (946), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 92/388 (23%), Positives = 179/388 (46%), Gaps = 26/388 (6%)

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           +           +   + +  +E E    +L +++E    G+ +I+  G I   NR+  +
Sbjct: 216 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 275

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542
            F    E+ L + +           +   + EI   +++   + +  LG  ++   +   
Sbjct: 276 TFHVTDEEYLDRLYYESFHHT---EIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 332

Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
            II          L  HDI+E K+ +                + DFLA VSHE++TP+T+
Sbjct: 333 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 378

Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           I GFSE + +   G + N ++ E + + I +    +  ++ DLLD+SKIE     L+   
Sbjct: 379 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGT 435

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           V +   + +   ++   A EK I ++ +       ++ D   +KQI +N+++NAI +TP+
Sbjct: 436 VDMKGLLEDIHMVLDNKAGEKEISLQVNVLKRA-SVIGDPSRLKQIFINLINNAIVYTPA 494

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           GG + +           ++V DTG+G++  E+ +  + F ++  ++     GTGLGL + 
Sbjct: 495 GGVVSVELA-EDKYNAYIKVSDTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIV 553

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           K +V+A+ G   + S   +GT   ++ P
Sbjct: 554 KHLVEAHHGTITVDSEVGEGTTFTVVLP 581


>gi|296505060|ref|YP_003666760.1| phosphate regulon sensor protein phoR [Bacillus thuringiensis
           BMB171]
 gi|296326112|gb|ADH09040.1| phosphate regulon sensor protein phoR [Bacillus thuringiensis
           BMB171]
          Length = 587

 Score =  368 bits (946), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 92/388 (23%), Positives = 179/388 (46%), Gaps = 26/388 (6%)

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           +           +   + +  +E E    +L +++E    G+ +I+  G I   NR+  +
Sbjct: 216 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 275

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542
            F    E+ L + +           +   + EI   +++   + +  LG  ++   +   
Sbjct: 276 TFHVTDEEYLDRLYYESFHHT---EIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 332

Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
            II          L  HDI+E K+ +                + DFLA VSHE++TP+T+
Sbjct: 333 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 378

Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           I GFSE + +   G + N ++ E + + I +    +  ++ DLLD+SKIE     L+   
Sbjct: 379 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGT 435

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           V +   + +   ++   A EK I ++ +       ++ D   +KQI +N+++NAI +TP+
Sbjct: 436 VDMKGLLEDIHMVLDNKAGEKEISLQVNVLKRA-SVIGDPSRLKQIFINLINNAIVYTPA 494

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           GG + +           ++V DTG+G++  E+ +  + F ++  ++     GTGLGL + 
Sbjct: 495 GGVVSVELA-EDKYNAYIKVSDTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIV 553

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           K +V+A+ G   + S   +GT   ++ P
Sbjct: 554 KHLVEAHHGTITVDSEVGEGTTFTVVLP 581


>gi|228941767|ref|ZP_04104314.1| hypothetical protein bthur0008_44030 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228974691|ref|ZP_04135257.1| hypothetical protein bthur0003_44440 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228785094|gb|EEM33107.1| hypothetical protein bthur0003_44440 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228817979|gb|EEM64057.1| hypothetical protein bthur0008_44030 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
          Length = 558

 Score =  368 bits (946), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 92/388 (23%), Positives = 179/388 (46%), Gaps = 26/388 (6%)

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           +           +   + +  +E E    +L +++E    G+ +I+  G I   NR+  +
Sbjct: 187 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 246

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542
            F    E+ L + +           +   + EI   +++   + +  LG  ++   +   
Sbjct: 247 TFHVTDEEYLDRLYYESFHHT---EIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 303

Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
            II          L  HDI+E K+ +                + DFLA VSHE++TP+T+
Sbjct: 304 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 349

Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           I GFSE + +   G + N ++ E + + I +    +  ++ DLLD+SKIE     L+   
Sbjct: 350 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGT 406

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           V +   + +   ++   A EK I ++ +       ++ D   +KQI +N+++NAI +TP+
Sbjct: 407 VDMKGLLEDIHMVLDNKAGEKEISLQVNVLKRA-SVIGDPSRLKQIFINLINNAIVYTPA 465

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           GG + +           ++V DTG+G++  E+ +  + F ++  ++     GTGLGL + 
Sbjct: 466 GGVVSVELA-EDKYNAYIKVSDTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIV 524

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           K +V+A+ G   + S   +GT   ++ P
Sbjct: 525 KHLVEAHHGTITVDSEVGEGTTFTVVLP 552


>gi|228981285|ref|ZP_04141585.1| hypothetical protein bthur0002_44460 [Bacillus thuringiensis Bt407]
 gi|228778485|gb|EEM26752.1| hypothetical protein bthur0002_44460 [Bacillus thuringiensis Bt407]
          Length = 545

 Score =  368 bits (946), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 92/388 (23%), Positives = 179/388 (46%), Gaps = 26/388 (6%)

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           +           +   + +  +E E    +L +++E    G+ +I+  G I   NR+  +
Sbjct: 174 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 233

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542
            F    E+ L + +           +   + EI   +++   + +  LG  ++   +   
Sbjct: 234 TFHVTDEEYLDRLYYESFHHT---EIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 290

Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
            II          L  HDI+E K+ +                + DFLA VSHE++TP+T+
Sbjct: 291 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 336

Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           I GFSE + +   G + N ++ E + + I +    +  ++ DLLD+SKIE     L+   
Sbjct: 337 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGT 393

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           V +   + +   ++   A EK I ++ +       ++ D   +KQI +N+++NAI +TP+
Sbjct: 394 VDMKGLLEDIHMVLDNKAGEKEISLQVNVLKRA-SVIGDPSRLKQIFINLINNAIVYTPA 452

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           GG + +           ++V DTG+G++  E+ +  + F ++  ++     GTGLGL + 
Sbjct: 453 GGVVSVELA-EDKYNAYIKVSDTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIV 511

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           K +V+A+ G   + S   +GT   ++ P
Sbjct: 512 KHLVEAHHGTITVDSEVGEGTTFTVVLP 539


>gi|117925742|ref|YP_866359.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117609498|gb|ABK44953.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 969

 Score =  368 bits (945), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 116/651 (17%), Positives = 240/651 (36%), Gaps = 29/651 (4%)

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247
           R+        KRL  + + L E      +++K +                + +      +
Sbjct: 197 RLSKRYSRPVKRLANQMAALLEHAPMLIAIQKGQQQPHVTSRLWHQFYRTHPLPDQPPLH 256

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
                  +       +++E ++      +     ++   +           +   L   +
Sbjct: 257 PLLPTKQEDLTKINSSAQELNVTLDGHEYHFLFTRFILSEELQEHAQPQICTIA-LDISD 315

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN---LFYANPSFLLLTKYKSVDDIEIAG 364
           H  +     E EN     V   P   +  +  +   + + +     ++ Y     I    
Sbjct: 316 HKLVERQLSESENRFHSLVSNLPGAVYRCNLDSAWSMLFISDGIERISGYPKESFIHN-- 373

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
            L     +    D+  +    ++       +       I  +      +         + 
Sbjct: 374 -LERSFASIIHKDDLIMVEQKVFEGVNLNRSYHMEYRIIHQDGAT-RWVYEEGRAHFGKH 431

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
            + +  +G+  +  D +  +  +     +L + + A+  G      E    S +  + ++
Sbjct: 432 GQALWLDGVIFDITDRKQMEHTLHQNRTRLQAAVVASRAGTFYYTIENDQNSWDARMLEI 491

Query: 485 FGYPVEDILR---KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
           +G                   ++  S    +   + +    QT +        +  +  L
Sbjct: 492 YGLEASQFDNNYAAWVRCIHPEDQHSTEQAFFRALSASYHTQTYDIEHRIVRPDGSIHHL 551

Query: 542 RIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
           R        S       S  + DI+E K+ +  L  A++ AE  +  KSDFLA +SHEIR
Sbjct: 552 RTQAWIQRDSQGKAEQVSGLVFDITEQKEVETTLRLAREQAESANRAKSDFLAAMSHEIR 611

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TP+ A+IG  EV+   +     +     Y   +  +G  +LD++N +LD+SKIESG+M L
Sbjct: 612 TPMNAVIGMGEVLLETKL----DQEQRHYIETLQHAGEALLDLINAILDLSKIESGRMEL 667

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAI 716
             +   L + V E   L Q+   ++ I +  ++  + P  I  D   ++QI  N++ NA+
Sbjct: 668 VEQDFDLHKMVVETCQLFQVQCRKQGIELNLNWEESNPTYIHGDQARIRQILFNLIGNAV 727

Query: 717 HFTPSGGQIIISTT-HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
            FT  G  + +        + ++ ++ D+G+G+   + E   + F Q  +S   R  G+G
Sbjct: 728 KFTDEGS-VTVEIRSIEQEKTLLFKITDSGIGIPADKQETIFQKFSQADSSLSRRHGGSG 786

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT-------SHPHDC 819
           LGL + + +V+   G+ ++ S   +G+      P   T       S+PHD 
Sbjct: 787 LGLTICRHLVEHMKGRIWVDSEEGQGSCFSFTLPCRPTAPKAEIISNPHDA 837


>gi|254417240|ref|ZP_05030985.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196176046|gb|EDX71065.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 1359

 Score =  368 bits (945), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 103/401 (25%), Positives = 191/401 (47%), Gaps = 21/401 (5%)

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
           +  E  + +  +  +     +    +  T+DGI   +     +  +    ++ GY    +
Sbjct: 570 LAIEIKERKRIESLLREREERYELAVSGTNDGIWDWDILTNEVYYSPVWMRILGYEENPL 629

Query: 493 LRK--PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
           L +   ++  +  +    +   +   L+    Q  E I     ++   L +    + +  
Sbjct: 630 LNRLSSWSDHVYPDDLHQVIEDINHHLA-GQTQIYENIHRIKHRDGHYLWIATKGRCIRD 688

Query: 551 SSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
                     T+ DI++ K  + +L  AK+ AE  +  KSDFLA +SHEIRTP+ A+IG 
Sbjct: 689 RDGNPYRLVGTITDITDKKIAQEQLKAAKEEAETANRTKSDFLAMMSHEIRTPMNAVIGM 748

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
           + ++ + +       +  E+ + I  S + +L I+ND+LD SKIESGK+NL  +P  L  
Sbjct: 749 TSLLLDTQLTA----QQGEFVDIIRNSSDALLTIINDILDFSKIESGKLNLEEQPFDLRA 804

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI 725
            + E++ L+   A +K I +     + IP  I+ D+  ++QI +N++SNA+ FT +G  +
Sbjct: 805 CIEESLELLSSKARDKGIELAYLMDSQIPESIVGDVTRLRQILVNLVSNAVKFTETG-DV 863

Query: 726 IISTT-----HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
           +IS T           +   VRDTG+G++   +++  KPF Q+  S   +  GTGLGL +
Sbjct: 864 VISVTPTAEISEEQIRLQFAVRDTGIGISRTRMDRLFKPFSQVDASTTRQYGGTGLGLAI 923

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIF---PLYDTSHPHD 818
           ++ + +   GK ++ S    G+         P+   S P +
Sbjct: 924 SQRLSELMGGKMWVESEEGVGSTFYFTVIATPVSSDSEPDN 964



 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/136 (10%), Positives = 31/136 (22%), Gaps = 6/136 (4%)

Query: 96  KEISEELPKTIGNYAFKMIGM--RLCDVSDILHIDPN-NHIGDLLKRQNTWYGKTTLWPI 152
              S    + +G     ++       D      +      I   L    T   +      
Sbjct: 612 VYYSPVWMRILGYEENPLLNRLSSWSDHVYPDDLHQVIEDINHHLA-GQTQIYENIHRIK 670

Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212
                Y+ I      I  R+     +R  G +         +   K   ++    +  K 
Sbjct: 671 HRDGHYLWIATKGRCIRDRDGNP--YRLVGTITDITDKKIAQEQLKAAKEEAETANRTKS 728

Query: 213 GHSSVEKEKYDIFSQQ 228
              ++   +       
Sbjct: 729 DFLAMMSHEIRTPMNA 744


>gi|229006923|ref|ZP_04164553.1| hypothetical protein bmyco0002_38240 [Bacillus mycoides Rock1-4]
 gi|228754323|gb|EEM03738.1| hypothetical protein bmyco0002_38240 [Bacillus mycoides Rock1-4]
          Length = 561

 Score =  368 bits (945), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 94/391 (24%), Positives = 184/391 (47%), Gaps = 26/391 (6%)

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           +           +   + +  +E E    +L +++E    G+ +I+  G I   NR+  +
Sbjct: 190 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYISLVNRSYKE 249

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542
           +F    E+ L + +         + +   + EI   +++   + +  LG  ++   +   
Sbjct: 250 IFHVTDEEYLDRLYYEAFLH---AEIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 306

Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
            II          L  HDI+E K+ +                + DFLA VSHE++TP+T+
Sbjct: 307 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 352

Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           I GFSE + +   G + N ++ E + N I +    +  ++ DLLD+SKIE     L+   
Sbjct: 353 IKGFSETLLD---GAMENQQFCEHFLNIILKESERMQGLIEDLLDLSKIEQQGFKLNMGT 409

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           V + E + E   +++  + +K I ++     ++  ++ D   +KQI +N+++NAI +TP+
Sbjct: 410 VEMKELLGEIKMVLENKSQDKEISLQVDVLRHV-SVIGDPSRLKQIFINLVNNAIVYTPA 468

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           GG + +           ++V DTG+G++  E+ +  + F ++  ++     GTGLGL + 
Sbjct: 469 GGTVSVEL-LEDEHNAYIKVSDTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIV 527

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
           K +V+A+ G   + S   +GT   +  P  D
Sbjct: 528 KHLVEAHHGTVTVESEVGEGTTFTVALPKSD 558


>gi|158339430|ref|YP_001520607.1| two-component hybrid sensor and regulator [Acaryochloris marina
            MBIC11017]
 gi|158309671|gb|ABW31288.1| two-component hybrid sensor and regulator, putative [Acaryochloris
            marina MBIC11017]
          Length = 1660

 Score =  368 bits (945), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 129/790 (16%), Positives = 257/790 (32%), Gaps = 92/790 (11%)

Query: 92   HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151
             G L ++++      G    K++ M L D+     +          ++  +   +     
Sbjct: 659  QGQLLDVNQRTLDIHGLTRDKILQMNLTDLVSEDSLQLFQKHFQQAEQGISLQFEDIAKN 718

Query: 152  IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE-- 209
             + +   +P+++       R R+ +  R   ++      +  +     ++       +  
Sbjct: 719  FQDSMASLPVEI-------RIRKVALKRNPVLITTLSDISRRKQQQTAIESIVKGTADKT 771

Query: 210  -------------------------IKKGHSSVEKEKYDIFSQQSPPP----------HL 234
                                     IK    +  +            P            
Sbjct: 772  GSDFYQSCVQYLANIFRVHYAFVAKIKDETWTQSRVLAMWTGDSFATPYDFDLSDTPCLE 831

Query: 235  RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294
              +++   +    + K   L     P   S  S L +      I        +      +
Sbjct: 832  TYRHEWCCVPNDLSAKFPTLSRHLSPQGESYISCLIKNSQGQVIGNLGIIDTKPLPVDTS 891

Query: 295  NSKESFEYLSHR-----NHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSF 348
            N +   +  + R        +        +      +D  P   ++    G     N   
Sbjct: 892  NLEFVLQLFATRVGAEMERQASEDALRRSQKQLQAVIDNSPAAIYLKDLEGKYLIFNRVL 951

Query: 349  LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
              L        +        L                L                +     
Sbjct: 952  GELFDIDPQTFLGKTDF--DLFPRQIAEKLRKNDINTLAAGQ-----VQTIEEVVTHADG 1004

Query: 409  NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468
            +        F   +         G+     D +  + ++      L  +++     I   
Sbjct: 1005 SRHTYIANKFPVLDPQGHVYAIGGVSTNISDRKRTENQLRESQQLLRLVIDNIPQLIYWK 1064

Query: 469  NREGIILSTNRAVSKLFGY-PVEDILRKPFTVFL-EQNTPSVMNHYLTEILSLDLRQTLE 526
            + + I L  N+  +   G    E ++ K            +        ++S  + +   
Sbjct: 1065 DHDSIYLGCNQNFAASMGLDSPEQVIGKTDDALSKPHKHLAASQQNDERVISTGIPELHV 1124

Query: 527  KITLGSTKEEKLLSLRIIIKKLPF----SSCYSLTMHDISEWKQEKNKLSHAKKIAEKE- 581
                 + +    +        L      +     T  DIS+ KQ +  L    +  E   
Sbjct: 1125 LQIFNTEQNGN-VWADTNKIPLKDPFDNTVGILGTYEDISDRKQAEQALKQVNEELEHRV 1183

Query: 582  -----------------SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
                             +  KSDFLA +SHE+RTPL  I+G+++V+K         P + 
Sbjct: 1184 VLRTKELQAAKEAADAANRAKSDFLANMSHELRTPLNGILGYAQVLKRDHH---LLPCHQ 1240

Query: 625  EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
            +  N I +SG  +L +++D+LDI+KIE+ K+ L+   +     +   ++L Q+ A EK I
Sbjct: 1241 QALNTIHQSGEHLLTLIDDILDIAKIEARKLELNISDIHFPSLLESIVNLFQMRAQEKNI 1300

Query: 685  LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVIL 739
                  A+++P+ I +D + ++QI LN+LSNAI FT  G Q+ +S     +     ++  
Sbjct: 1301 QFVYRPADSLPQGIQSDKKCLRQILLNLLSNAIKFTDQG-QVTLSVEIEQHTSQQIKLKF 1359

Query: 740  RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
             + DTG+G++  ++E+   PF Q+      R EGTGLGL +++ +V+   G     S   
Sbjct: 1360 TITDTGIGISPDQIEQIFHPFEQV-GDLNRRAEGTGLGLSISRQLVELMGGTLQAESCEE 1418

Query: 800  KGTLIEIIFP 809
            KG+      P
Sbjct: 1419 KGSTFWFSIP 1428



 Score = 68.1 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 65/193 (33%), Gaps = 13/193 (6%)

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
           L  S    I     L +               F           Q     E +++ +  R
Sbjct: 568 LQDSAGKPIGVLCCLSSSPIPDGEFAYSILQIFGARAGAELERLQGIKALEQLNSELEAR 627

Query: 446 ------KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
                  ++     L +IL    DGI I   +G +L  N+    + G   + IL+   T 
Sbjct: 628 VRSRTVALKQSQQDLRTILNTAYDGIYIHTLQGQLLDVNQRTLDIHGLTRDKILQMNLTD 687

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL----LSLRIIIKKLPFSSCYS 555
            + +++  +   +  +        +L+   +    ++ +    + +RI    L  +    
Sbjct: 688 LVSEDSLQLFQKHFQQAEQG---ISLQFEDIAKNFQDSMASLPVEIRIRKVALKRNPVLI 744

Query: 556 LTMHDISEWKQEK 568
            T+ DIS  KQ++
Sbjct: 745 TTLSDISRRKQQQ 757



 Score = 54.3 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 46/127 (36%), Gaps = 7/127 (5%)

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYP-VEDILRKPFTVFLE-QNTPSVMNHYL 513
           SI +  SD IA+    G I   N     LFGY   E +L +P+ VF   +    +    L
Sbjct: 60  SIFDGASDAIALC-EAGCITYVNPQHLNLFGYSTPEPLLGQPWQVFYSQEEARRIETDIL 118

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH 573
            ++L     Q  +  T    +  +     +       +    +   D+++    ++    
Sbjct: 119 PKLLPN---QGWQGETYAQRQGGEAFIAEMSFSLAQPAQ-MLMVSRDVTQQAYIESWQDA 174

Query: 574 AKKIAEK 580
              I ++
Sbjct: 175 QTTILKQ 181



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/247 (8%), Positives = 55/247 (22%), Gaps = 12/247 (4%)

Query: 90   DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTWYGKTT 148
            D  G     +  L +         +G    D+      +       + L        +  
Sbjct: 939  DLEGKYLIFNRVLGELFDIDPQTFLGKTDFDLFPRQIAEKLRKNDINTLAAGQVQTIEEV 998

Query: 149  LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
            +   +G+           P+         +   G+              +   +    + 
Sbjct: 999  VTHADGS--RHTYIANKFPVLDPQGHV--YAIGGVSTNISDRKRTENQLRESQQLLRLVI 1054

Query: 209  EIKKGHSSVEKEKYDIFSQQ---SPPPHLRMKNKVSSLTEYYAHKD----DVLKTEKYPL 261
            +        +             +    L    +V   T+    K        +     +
Sbjct: 1055 DNIPQLIYWKDHDSIYLGCNQNFAASMGLDSPEQVIGKTDDALSKPHKHLAASQQNDERV 1114

Query: 262  LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
            +++    L   + F+T              L++    +   L      S     ++    
Sbjct: 1115 ISTGIPELHVLQIFNTEQNGNVWADTNKIPLKDPFDNTVGILGTYEDISDRKQAEQALKQ 1174

Query: 322  TPETVDK 328
              E ++ 
Sbjct: 1175 VNEELEH 1181



 Score = 48.1 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 45/434 (10%), Positives = 113/434 (26%), Gaps = 65/434 (14%)

Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291
                   +        +  +  +  +  +L     +   Q + +               
Sbjct: 88  FGYSTPEPLLGQPWQVFYSQEEARRIETDILPKLLPNQGWQGETYAQRQGGEAFIAEMSF 147

Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF----------------FV 335
              +  +  + L      +  AY +  ++     + +                      +
Sbjct: 148 ---SLAQPAQMLMVSRDVTQQAYIESWQDAQTTILKQLATGTPTIEVLETIMDSLECHLL 204

Query: 336 YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK--------------------L 375
              G + + +P   L          E+   +  +  +                       
Sbjct: 205 GGRGAVLFVDPYHYLRLGVAPHLPPEMINIVERIEISDTGGPLSQAVRSKEPVISELNTY 264

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
           S     + + + +  ++C +       IQ     ++           +         +  
Sbjct: 265 SPLTTTEQIAIDQGFQSCWSFPILNSQIQVVGIMAVYFKTSRVPTEYEQKFLDIALDLAG 324

Query: 436 EDVDTRINKRKMEI-------EVMQLCSILEATSDGIAIINREGIILSTNRA-VSKLFGY 487
             ++ + ++ + E           +L +I +   D +  +N  G +L             
Sbjct: 325 LALEQQQSRAQKEENSSDILRSNAELQAIFDTFPDLLLRVNSYGTLLGFKGGHYQDDLFD 384

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE----KITLGSTKEEKLLSLRI 543
             E  L K     L +   +     LTE+L        E    +  +    E ++L    
Sbjct: 385 QPEAFLGKQIQSILPEEISNKFLTVLTEVLESQQIHQFEYSLFRENITQYYEARILPA-- 442

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
                         + ++S+ K+ +  LS       K +    DF   +  EI     + 
Sbjct: 443 ------DPGQVLALIRNVSDRKRAELALSGLFNGTSKVTG--DDFFQVLVQEI----AST 490

Query: 604 IGFSEVIKNQRFGP 617
           +  SEV+ +Q  G 
Sbjct: 491 LNMSEVMLSQVDGE 504


>gi|119962503|ref|YP_948930.1| signal transduction histidine kinase [Arthrobacter aurescens TC1]
 gi|119949362|gb|ABM08273.1| putative signal transduction histidine kinase [Arthrobacter
           aurescens TC1]
          Length = 1153

 Score =  368 bits (945), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 111/475 (23%), Positives = 203/475 (42%), Gaps = 27/475 (5%)

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN-- 422
           GLS LL        +                 SA   +          +           
Sbjct: 255 GLSPLLPESGTPQKDGRVYAAALELLPYLPVFSAVFFSRSRPIGEDRILLVTGLVVIVFV 314

Query: 423 --QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
             +    + +N     ++++++ +R  E+E   L +I+ ++ D I     +G+I S N  
Sbjct: 315 IVRQVLIVVENVTLTRELESKVAQRTAELEG--LGAIVNSSGDAIIGETPDGVITSWNPG 372

Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
             ++FGYP  + + +    F+ Q+        L               +     + K++ 
Sbjct: 373 AERIFGYPASEAIGRQGDFFVPQDLVENERRALESTAQSG--HVQNYESQRQRGDGKVIP 430

Query: 541 LRIIIKKLPFSSCYSLTM---HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
           + + +  +   S          DI+E K  + +L  A++ A + S  KS+FLA +SHEIR
Sbjct: 431 VSVTLSPVRGGSGIRGVATISRDITERKAAEKELLAAREAALEASRLKSEFLATMSHEIR 490

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TPL A+IG + ++ +       +    +YA  +  +G ++L ++ND+LD SK+E+GK++L
Sbjct: 491 TPLNAVIGLTSLMMDTPL----SEGQRQYAQGVKGAGEVLLTLINDILDFSKLEAGKVDL 546

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAI 716
                   E V E   LV   A  K + + +    ++P R++ D   ++QI LN+ SNA+
Sbjct: 547 DINAFDPRELVEEVAGLVVEAAQGKDLELISYCHPDVPARLMGDAGRIRQILLNLSSNAV 606

Query: 717 HFTPSGG-QIIISTTHTS--------NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
            FTP G  ++ +S                +   VRDTG+G++    ++  + F Q   S 
Sbjct: 607 KFTPDGEVEVQVSVLAHDPNLAHDPNKASLRFEVRDTGIGISAENHQRLFESFAQADAST 666

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI--IFPLYDTSHPHDCI 820
             R  GTGLGL +++ + +   GK  + S P  G+        PL   +   + +
Sbjct: 667 TRRYGGTGLGLAISRRLTEVMGGKIGLDSEPGVGSRFWFDLELPLGPAATDTESL 721



 Score = 54.6 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/139 (11%), Positives = 34/139 (24%), Gaps = 12/139 (8%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150
             G +   +    +  G  A + IG +  D      +  N      L+      G    +
Sbjct: 362 PDGVITSWNPGAERIFGYPASEAIGRQ-GDFFVPQDLVENER--RALESTAQ-SGHVQNY 417

Query: 151 ---PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIV-HVNRVDNDPRALGKRLDKKFSH 206
                 G    +P+ +   P+   +    G RG   +                  +    
Sbjct: 418 ESQRQRGDGKVIPVSVTLSPVRGGS----GIRGVATISRDITERKAAEKELLAAREAALE 473

Query: 207 LHEIKKGHSSVEKEKYDIF 225
              +K    +    +    
Sbjct: 474 ASRLKSEFLATMSHEIRTP 492


>gi|162452641|ref|YP_001615008.1| hybrid histidine kinase [Sorangium cellulosum 'So ce 56']
 gi|161163223|emb|CAN94528.1| Hybrid Histidine Kinase [Sorangium cellulosum 'So ce 56']
          Length = 961

 Score =  368 bits (945), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 132/800 (16%), Positives = 259/800 (32%), Gaps = 65/800 (8%)

Query: 68  LDSENTFVFDPIPRTVRFTWNIDAH-GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH 126
           +               R T  IDA  G +   S  L   +G    +++  +L D++    
Sbjct: 1   MGETAGQPAWATRAPSRGTARIDASSGKILRASSSLCLLLGYSEGELLQKKLSDLALPED 60

Query: 127 IDPNNHIGDLL--KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIV 184
              +      L    +     +      +G    + +    + +    +    +R    V
Sbjct: 61  RAGSLAAWRSLLEADEEELTFEMACRCKDGGVRSLHVT--GVFVRDVRQRP--YRAVVFV 116

Query: 185 HVNRVDNDPRALGKR-------LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP------- 230
                  +               + K  ++        +       I             
Sbjct: 117 EDITEPRNAEERALAAEQALAESEAKLRNIFHSNMAPMAFWTHDGRIIEANDAYLKLVGH 176

Query: 231 PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY----TKK 286
                    V    +               L  S  +  P +  +   +  +     +  
Sbjct: 177 TREEVAAGLVRWDADMSPEDRAAGDRALAELRASRWTFTPFERTYVLRDGTRIKMLVSGC 236

Query: 287 QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYAN 345
              G     +  +          +  A     E +     +      +V    G   Y++
Sbjct: 237 LLPGERYEEAGFAIVLDMTALRQT-EAAVQRCEQVFRAIGESIDYGLWVSDPAGQNIYSS 295

Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKL----------SDNNAIKPVMLYRSDRTCIA 395
            +FL +   K        G + TL    +                 + +     D     
Sbjct: 296 HAFLQMAGIKQEQCSGH-GWIETLHPDDRHKVAIFEECVRRGEPFEEELRYVSPDGVVHP 354

Query: 396 ASARLHTIQWNRENSLAMT------FIPFEKANQFPENMPQNGIEPEDVDTRINKR---- 445
              R   ++  R    A               +   E+  +     ++    I +R    
Sbjct: 355 VLNRGVPVRDERGEITAWVGICLDVSRLKRTEDALRESEGRLRAALDEAQRVIAERGRLE 414

Query: 446 -KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF-LEQ 503
            ++     +L S++  + D I  ++ +      +     + G+P E  + +      L  
Sbjct: 415 DELRARERELASLMANSPDVIYRLDLDLRCTFMSPTSWTVMGFPPEHYIGRTPRENGLPT 474

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
               V      E L+    Q +E    G     +++     +        +     D++ 
Sbjct: 475 EVIEVSEAVCHEALATARPQRMEFSLGGRRFRARIIP---ELGPEGAVDSFMGITEDVTA 531

Query: 564 WKQEKNKLSH-------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            +  + +          A+  AE+ S  K DF+A +SHE+R+P+ AI+G++ +++ +   
Sbjct: 532 ERLAEEERQKLLESERAARDEAERVSRVKDDFVATLSHELRSPINAILGWARILRGRAPE 591

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
           P   P        I+R+  L  D+V++LLD+S+I SGK+ L  +PV L   +  A+  +Q
Sbjct: 592 P---PTLARGLEVIERNARLQADMVSELLDMSRIVSGKLRLDVQPVDLPSVIRSALEAIQ 648

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
           L A  K I + +S       +  D   + Q+  N+LSNA+ FTP GG+I ++    +   
Sbjct: 649 LAAETKGIAVASSIDPEASSLRGDPARIHQVVWNLLSNAVKFTPPGGRIDVALR-RAGAH 707

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
             L V DTG+G+    L    + F Q   S   +  G G+GL + K +V+ + G   + S
Sbjct: 708 AALSVTDTGMGIAPQFLPHLFERFRQADASSTRKHGGLGIGLSIVKHLVELHGGTVEVAS 767

Query: 797 T-PAKGTLIEIIFPLYDTSH 815
                G    +  PL   S 
Sbjct: 768 QGEHLGATFTVTLPLAGVSQ 787


>gi|120597472|ref|YP_962046.1| multi-sensor hybrid histidine kinase [Shewanella sp. W3-18-1]
 gi|146294387|ref|YP_001184811.1| multi-sensor hybrid histidine kinase [Shewanella putrefaciens
           CN-32]
 gi|120557565|gb|ABM23492.1| multi-sensor hybrid histidine kinase [Shewanella sp. W3-18-1]
 gi|145566077|gb|ABP77012.1| multi-sensor hybrid histidine kinase [Shewanella putrefaciens
           CN-32]
 gi|319427741|gb|ADV55815.1| sensor histidine kinase for anaerobic respiratory control, ArcS
           [Shewanella putrefaciens 200]
          Length = 1234

 Score =  368 bits (945), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 125/594 (21%), Positives = 207/594 (34%), Gaps = 46/594 (7%)

Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291
           P  R+ + +   ++      + +     P          E + +           +    
Sbjct: 381 PASRLLSHLEGCSQEPRKPPEKITQGWEPWFLLVSRIFEENKQYTH------HLAEQNKR 434

Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLL 350
           L        E L          Y      L    +D  P    F    GN    N +   
Sbjct: 435 LDKLVARRTERLKDTTERREREYA-----LLRSLLDSIPEAIVFKDKEGNYLGCNKAAER 489

Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
           +  Y   + I ++     L          A    +L             L          
Sbjct: 490 MLGYTESEMIGLSS--EDLTSPEMGIRIRAEDQQVLKDRTPLRYQEKVELA------GKP 541

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA--II 468
           + +  +     N+  E +    +  +      +  ++ +   +    ++A  DG+    +
Sbjct: 542 VLLDTLKLPFYNRRGELLGLIAVWRDVTREYESAEQLRLSEERYHLAMDAVEDGLWDWYL 601

Query: 469 NREGIILSTNRAVSKLFGYPVED--ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
           + E II   N A   + GY   +   L          +    +  Y  + L   +    E
Sbjct: 602 DSEQII--CNPAYYSMLGYKTNEFPALVSAIDHLTHPDDRIRVEEYRNQYLQDPVDA-YE 658

Query: 527 KITLGSTKEEKLLSLR-----IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE 581
                  K      +      +             T  DI+  K  +  L  AK+ AE  
Sbjct: 659 IEFRLLGKNGTYHWVLCRGRVVEFTADGQPKRMLGTHKDITRQKSNEVALLEAKQDAELA 718

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
           + +KS+FLA +SHEIRTP+ AIIG  ++ +     P    +  +Y      S   +L I+
Sbjct: 719 NLYKSEFLANMSHEIRTPMNAIIGMLQLAQRTSLTP----QQKDYLEKAGFSAQSLLRII 774

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-AD 700
           ND+LD SKIE+GK+ L   P  LD+ +  A+ L  L A E+ + +          IL  D
Sbjct: 775 NDILDFSKIEAGKLELERVPFPLDKVLDHALDLNALKAQEQGVELLLYAPVTAGLILKGD 834

Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE------VILRVRDTGVGMTNYELE 754
              + Q+ +N+LSNA+ FT SG    I        E      +   VRDTG+G++  + E
Sbjct: 835 PLRLGQVLINLLSNAVKFTQSG---EIELGCEDVGERDHRITLKFWVRDTGIGISKDQQE 891

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           K    F Q   S   +  GTGLGL ++K +V    GK  + S    G+      
Sbjct: 892 KLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGKMQVQSELGVGSTFSFTI 945



 Score = 58.1 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 48/347 (13%), Positives = 100/347 (28%), Gaps = 30/347 (8%)

Query: 9   NPEDILTSNCKGNTQDLSK--KKIDNGFE-----TEKSKKENPCHDSFEQSNFTDQNQES 61
           +P   L S+ +G +Q+  K  +KI  G+E       +  +EN  +           ++  
Sbjct: 380 SPASRLLSHLEGCSQEPRKPPEKITQGWEPWFLLVSRIFEENKQYTHHLAEQNKRLDKLV 439

Query: 62  VSNTNYLDSENTFVFDP--------IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM 113
              T  L                          +  D  G     ++   + +G    +M
Sbjct: 440 ARRTERLKDTTERREREYALLRSLLDSIPEAIVFK-DKEGNYLGCNKAAERMLGYTESEM 498

Query: 114 IGMRLCDVSDIL-HIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172
           IG+   D++     I        +LK +     +     +E     V +D   LP Y+R 
Sbjct: 499 IGLSSEDLTSPEMGIRIRAEDQQVLKDRTPLRYQE---KVELAGKPVLLDTLKLPFYNRR 555

Query: 173 REFSGFRGFGIVHVN-RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231
            E  G     +     R       L    ++    +  ++ G      +   I    +  
Sbjct: 556 GELLGL--IAVWRDVTREYESAEQLRLSEERYHLAMDAVEDGLWDWYLDSEQIICNPAYY 613

Query: 232 PHLRMK----NKVSSLTEYYAHKDDVLKTEKYPL--LTSEESSLPEQEDFHTINLNQYTK 285
             L  K      + S  ++  H DD ++ E+Y    L     +   +      N   +  
Sbjct: 614 SMLGYKTNEFPALVSAIDHLTHPDDRIRVEEYRNQYLQDPVDAYEIEFRLLGKNGTYHWV 673

Query: 286 KQYFGTLQ-NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI 331
                 ++     +    L      +     +       +  +   +
Sbjct: 674 LCRGRVVEFTADGQPKRMLGTHKDITRQKSNEVALLEAKQDAELANL 720


>gi|163739340|ref|ZP_02146751.1| multi-sensor hybrid histidine kinase [Phaeobacter gallaeciensis
           BS107]
 gi|161387410|gb|EDQ11768.1| multi-sensor hybrid histidine kinase [Phaeobacter gallaeciensis
           BS107]
          Length = 754

 Score =  368 bits (945), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 92/372 (24%), Positives = 183/372 (49%), Gaps = 14/372 (3%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           +  +++  +L  + E  +D + +++ +G I   N A +++ GY  ++ + K     L  +
Sbjct: 237 QAQQLQSQRLALVAENANDSVFLMDEKGRISWVNEAFTRITGYRYDEAIGKMPGALLNGD 296

Query: 505 TPS-VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMH 559
                +   L +  +               K+ +LL L      +               
Sbjct: 297 DTDMAVVRALEKGRATGKP--FRLEICNRRKDGQLLWLETNQVPMLRDDGTVETIIAVER 354

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           D++  KQ + +L  A+  AE+ +  KS+FLA +SHEIRTP+  +IG +++++  +     
Sbjct: 355 DVTAAKQYEQQLKDARIAAEEGARVKSEFLATMSHEIRTPMNGVIGMAQMLERTQL---- 410

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
           +     YA+ I  S   +L ++ND+LD+SK+++G++ L      L     + + L +  A
Sbjct: 411 DEEQKLYADTILGSARTLLSLINDVLDLSKMDAGEVILSEVDFDLPACFQQTLQLFEPQA 470

Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNE-E 736
            EK I +  + A ++PRI+  D R ++Q+ LN++ NA+ FT +GG  + ++T+   +   
Sbjct: 471 QEKGITLDLNIAPDVPRIINGDDRRLRQVLLNLVGNAVKFTDTGGVGVAVTTSRVGDRLR 530

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           +   V DTG+G+   + ++  + F Q   +   R  GTGLGL +++ + +A  G+  + S
Sbjct: 531 LRFSVTDTGIGIAKEKQDQIFERFSQADAAITRRFGGTGLGLTISRLLCEAMGGEIDVTS 590

Query: 797 TPAKGTLIEIIF 808
            P KG+   +  
Sbjct: 591 DPGKGSCFSVHL 602



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/411 (8%), Positives = 91/411 (22%), Gaps = 40/411 (9%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTW 143
            + +D  G +  ++E   +  G    + IG     + +    D      +         +
Sbjct: 257 VFLMDEKGRISWVNEAFTRITGYRYDEAIGKMPGALLNGDDTDMAVVRALEKGRATGKPF 316

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +      +G    + ++   +P+   +          +              K     
Sbjct: 317 RLEICNRRKDG--QLLWLETNQVPMLRDDGTVETI--IAVERDVTAAKQYEQQLKDARIA 372

Query: 204 FSHLHEIKKGHSSVEKEKYD-----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
                 +K    +    +       +          ++  +     +        L +  
Sbjct: 373 AEEGARVKSEFLATMSHEIRTPMNGVIGMAQMLERTQLDEEQKLYADTILGSARTLLSLI 432

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
             +L   +    E              +Q     +  ++E    L     P +    +  
Sbjct: 433 NDVLDLSKMDAGEVILSEVDFDLPACFQQTLQLFEPQAQEKGITLDLNIAPDVPRIINGD 492

Query: 319 ENLTPETV-----------DKCPIPFFVY-----SHGNLFYAN------------PSFLL 350
           +    + +           D   +   V          L ++                  
Sbjct: 493 DRRLRQVLLNLVGNAVKFTDTGGVGVAVTTSRVGDRLRLRFSVTDTGIGIAKEKQDQIFE 552

Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
                        GG    L   +L        + +          S  L        N 
Sbjct: 553 RFSQADAAITRRFGGTGLGLTISRLLCEAMGGEIDVTSDPGKGSCFSVHLRMQPATGANL 612

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
             +     +      E M     E   ++  + ++ ++ E + L   ++  
Sbjct: 613 AEVAASAQQAGRSL-EGMRILVAEDNRINRLLVEKYLQDEPVTLEFAVDGA 662



 Score = 54.3 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 13/140 (9%), Positives = 36/140 (25%), Gaps = 7/140 (5%)

Query: 313 AYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
                         +      F+    G + + N +F  +T Y+  + I    G    L 
Sbjct: 237 QAQQLQSQRLALVAENANDSVFLMDEKGRISWVNEAFTRITGYRYDEAIGKMPGA---LL 293

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
               +D   ++ +   R+              +      L +                  
Sbjct: 294 NGDDTDMAVVRALEKGRATGKPFRLEICN---RRKDGQLLWLETNQVPMLRDDGTVETII 350

Query: 432 GIEPEDVDTRINKRKMEIEV 451
            +E +    +  +++++   
Sbjct: 351 AVERDVTAAKQYEQQLKDAR 370


>gi|256828852|ref|YP_003157580.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256578028|gb|ACU89164.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 862

 Score =  368 bits (945), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 119/526 (22%), Positives = 214/526 (40%), Gaps = 31/526 (5%)

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTK 353
           N     +  L  RN   +    +E E L     +   +   +   G + YANP+    T 
Sbjct: 196 NRQFARYTLLQLRNDALMEK-LNESEYLFRTLTEHSSMGVLLLDDGRVLYANPAVEAATG 254

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
           Y   + +     +  ++D       +   P  + ++             I+        +
Sbjct: 255 YGLDELMG--MMIREIVDPEHRGVVDQSTPGSVGQAIGRS------EFRIRRKDGTVRWV 306

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG--IAIINRE 471
            ++P     Q  +     G   +  D  + ++  +    +   + E  SD   +  ++ E
Sbjct: 307 EYVPALVEFQGRKV--VLGACADITDRMLVRQARQENEERYRVLFETASDAMYVVGLDPE 364

Query: 472 GII---LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528
           G +      N       GY +E++LR                     + S        + 
Sbjct: 365 GRLDLFRDANVQGCAALGYSLEELLRLGPRDMTHLYELKHAGELQRRLRSDGCAVYDARH 424

Query: 529 TLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
               +++ +   + +  K               DISE K+ + +L  AKK AE  +  KS
Sbjct: 425 V---SRDGRFFPVEVSAKLFSHEGKQAVLCIARDISERKEAELRLEAAKKQAEVANQAKS 481

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
           +FLA +SHEIRTPL  ++G  ++++        +    +Y +    SG  +L ++ND+LD
Sbjct: 482 EFLANMSHEIRTPLNGLLGMLQLVRMGDL----DAERSQYLDVAMNSGEGLLAVINDILD 537

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVK 705
           +SKIESGK  L     ++   V       +  A  K + +      ++P  I AD   ++
Sbjct: 538 LSKIESGKFELAPVDFNVHALVQSVGETFRFPARSKGVELIVETDADMPVFIHADQVRIR 597

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHT----SNEEVILRVRDTGVGMTNYELEKAMKPFG 761
           QI  N++ NA+ FT +G +I IS +      +  ++ +RV DTGVG+   +     +PF 
Sbjct: 598 QILYNLVGNAVKFTLAG-EIRISLSMPFQTGNRGQMEIRVADTGVGIPLDQQAALFEPFV 656

Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           Q   + + RG GTGLGL + K +V    G+  + STP +GT + + 
Sbjct: 657 QASTAPKTRGSGTGLGLSIVKRIVGFMGGRVRLDSTPGEGTTLTVS 702



 Score = 48.5 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/253 (10%), Positives = 64/253 (25%), Gaps = 24/253 (9%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL-----HIDPNNHIGDLLKRQNTWYGK 146
            G +   +  +    G    +++GM + ++ D              +G  + R      +
Sbjct: 239 DGRVLYANPAVEAATGYGLDELMGMMIREIVDPEHRGVVDQSTPGSVGQAIGR-----SE 293

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF-GIVHVNRVDNDPRALGKRLDKKFS 205
             +   +GT  +V    A +       EF G +   G           R   +  ++++ 
Sbjct: 294 FRIRRKDGTVRWVEYVPALV-------EFQGRKVVLGACADITDRMLVRQARQENEERYR 346

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
            L E       V     +         +++    +    E          T  Y L  + 
Sbjct: 347 VLFETASDAMYVVGLDPEGRLDLFRDANVQGCAALGYSLEELLRLGPRDMTHLYELKHAG 406

Query: 266 ESSLPEQE------DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
           E     +       D   ++ +             + +     L      S     +   
Sbjct: 407 ELQRRLRSDGCAVYDARHVSRDGRFFPVEVSAKLFSHEGKQAVLCIARDISERKEAELRL 466

Query: 320 NLTPETVDKCPIP 332
               +  +     
Sbjct: 467 EAAKKQAEVANQA 479


>gi|264677650|ref|YP_003277556.1| Proline sensor PrlS [Comamonas testosteroni CNB-2]
 gi|262208162|gb|ACY32260.1| Proline sensor PrlS [Comamonas testosteroni CNB-2]
          Length = 1755

 Score =  368 bits (945), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 115/738 (15%), Positives = 248/738 (33%), Gaps = 34/738 (4%)

Query: 98   ISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNL 157
             +       G     + GM + D+        N    D + R +    +  +   +G   
Sbjct: 516  ANHAYHTLFGVDPDTLPGMSMVDLLGKDLFAANRPHIDAVLRGDEQTFERAILGPDGKER 575

Query: 158  YVPIDLAALPIYSRNREFSGFRGF--GIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHS 215
            +       +P    + E  GF      +  +        A  +        ++E      
Sbjct: 576  HSL--AHYIPDR-IDGEVQGFYVMEHDVTELVEGRQQLAAALRENQVLLQTINEQLLYSV 632

Query: 216  SVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDF 275
            S         + Q    H   + ++     +  +           +  +  ++     + 
Sbjct: 633  SDPNGVIIEANDQFCLVHGYTREEIIGRDHHLFNSGLHPAAFWQNMWDTVLANKAWHGEI 692

Query: 276  --HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC---- 329
                 + +            ++  +   +++ R   +     DE        +       
Sbjct: 693  CNKGKDGSLLWFDTVIAPCLDSEGQLERFVALRIDVTERRAADEERKRLNVLLGNVLRSA 752

Query: 330  --PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
                       G +   N     +  Y+  + +         L     +    +      
Sbjct: 753  SEVSIIATDQDGLITIFNSGAQRMLGYQEDEMVGRCTPAVIHLPDEVNARGEELSRQYGQ 812

Query: 388  RSDR--------TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
              +           +A   R  T      +   +        ++        GI  +  +
Sbjct: 813  AIEGFRVFVHVPEFVAPETREWTYVCKDGSWRRVMLAVTAMRDEQGVLTGYLGIATDITE 872

Query: 440  TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV---EDILRKP 496
             +  ++++E+ + QL S  +    G+     E  I+  N  + +++  P      +  + 
Sbjct: 873  QQQARQELELALDQLASAADVAEMGVWKWTLEENIVQWNPKMFEIYALPEVKGGVLDFEG 932

Query: 497  FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--Y 554
            +   L  +        L   L            +    + + +     + +        +
Sbjct: 933  WRSRLHPDDVDATMASLQVALDGRGVYDPVFRVVHPDGQIRYVQAAGKVGRDAKGRAVSF 992

Query: 555  SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                 DI+  KQ +N L  A++ AE+ +  KS FLA +SHEIRTP+ A++G  ++++  +
Sbjct: 993  VGINQDITIRKQFENSLELARQQAEQANVAKSQFLANMSHEIRTPMNAVLGMLQLVRQTQ 1052

Query: 615  FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                   R  +Y      +   +L ++ND+LD SKI++GK+ L     SL++ + E   +
Sbjct: 1053 LDT----RQQDYVVKAQSAAQSLLALLNDILDFSKIDAGKLELDIHAFSLEDMLRELAVV 1108

Query: 675  VQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHT 732
            +    + K + +      ++P  +  D   + QI +N+  NA+ FT +G  +I +S    
Sbjct: 1109 LSGNQHHKTVELMFEVDPSLPLEVRGDKLRILQILINLGGNALKFTEAGQVVIHLSALRQ 1168

Query: 733  SNEEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
                V L   V DTG+G+T  +L +    F Q  +S   R  G+GLGL + + +V     
Sbjct: 1169 DAASVTLQVSVTDTGIGITPEQLSRIFNGFTQAESSTTRRFGGSGLGLVICQRLVALMGS 1228

Query: 791  KFYIFSTPAKGTLIEIIF 808
            +  + S P +G+      
Sbjct: 1229 ELRVDSEPGRGSCFSFEL 1246



 Score =  133 bits (335), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 50/536 (9%), Positives = 125/536 (23%), Gaps = 56/536 (10%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151
            G +   +       G  A + +G  +  +     +            +       T   
Sbjct: 365 QGVVTSWNRGAEDIFGYRADEALGKTMAQLVVPDDLVYEEEDILARIGRGERLDHFTTRR 424

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
                  + + ++  PI   +    G      V             K L+     +   +
Sbjct: 425 RHKNGQLIDVSVSVSPIIDDSGRIVGTSK--TVRDISEQVVIERQMKELNAHLEEMVATR 482

Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRM--------------------KNKVSSLTEYYAHKD 251
                  +          P                           + +  ++       
Sbjct: 483 TAELDRARRVLRTVLDAVPSMIGYWDKQLVNRVANHAYHTLFGVDPDTLPGMSMVDLLGK 542

Query: 252 DVLKTEKYPLLTSEESSLPEQEDF--------HTINLNQYTKKQYFGTLQNNSKESFEYL 303
           D+    +  +           E               +    +           E     
Sbjct: 543 DLFAANRPHIDAVLRGDEQTFERAILGPDGKERHSLAHYIPDRIDGEVQGFYVMEHDVTE 602

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIA 363
                  L+A   E + L     ++         +G +  AN  F L+  Y   + I   
Sbjct: 603 LVEGRQQLAAALRENQVLLQTINEQLLYSV-SDPNGVIIEANDQFCLVHGYTREEII--- 658

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
            G    L    L      + +                        + L    +     + 
Sbjct: 659 -GRDHHLFNSGLHPAAFWQNMWDTVLANKAWHGEICNK---GKDGSLLWFDTVIAPCLDS 714

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNRAVS 482
             +      +  +  + R    + +   + L ++L + S+  I   +++G+I   N    
Sbjct: 715 EGQLERFVALRIDVTERRAADEERKRLNVLLGNVLRSASEVSIIATDQDGLITIFNSGAQ 774

Query: 483 KLFGYPVEDILRK--PFTVFLEQNTPSVMNHYLTEILSL-----------DLRQTLEKIT 529
           ++ GY  ++++ +  P  + L     +       +               +      +  
Sbjct: 775 RMLGYQEDEMVGRCTPAVIHLPDEVNARGEELSRQYGQAIEGFRVFVHVPEFVAPETREW 834

Query: 530 LGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKE 581
               K+     + + +  +         Y     DI+E +Q + +L  A       
Sbjct: 835 TYVCKDGSWRRVMLAVTAMRDEQGVLTGYLGIATDITEQQQARQELELALDQLASA 890



 Score =  119 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 57/443 (12%), Positives = 121/443 (27%), Gaps = 37/443 (8%)

Query: 165 ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDI 224
                    EF G RGFG +   RV     A      ++        +       E+Y I
Sbjct: 91  YSASRDMKVEFPGARGFGFIR--RVPLADEAAFVARARQDDAPGFAIRQLQPHAGERYVI 148

Query: 225 FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYT 284
              +    + +      +         D         LT+  + +   +      L    
Sbjct: 149 QYLEPQAGNQQAIGLDIASEANRKAAADAAMRSGQVQLTAPITLVQAMKAPSKSFLMLMP 208

Query: 285 KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYA 344
                                          D        T+     P  +         
Sbjct: 209 IY-----------------------RDGMGRDSEAQRVAATLGWSYAPILMDEVMGAIRI 245

Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
           NP     T    + D+           +   +        +             R     
Sbjct: 246 NPELTQFT----LSDVSDPRKPVVFYASRAAAGAVIGSRSVTKTILGRTWQIEVRFQPAF 301

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
                 L    +          ++    +      +R+ ++++     ++ +I+E++ DG
Sbjct: 302 LAG---LHQNNLYAVGLLGVLASLGFAIMVFLWSSSRLRQQQLIDAQARMAAIVESSIDG 358

Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
           I     +G++ S NR    +FGY  ++ L K     +  +        +   +     + 
Sbjct: 359 IIGKTLQGVVTSWNRGAEDIFGYRADEALGKTMAQLVVPDDLVYEEEDILARIGRG-ERL 417

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEK 580
               T    K  +L+ + + +  +   S   +    T+ DISE    + ++       E+
Sbjct: 418 DHFTTRRRHKNGQLIDVSVSVSPIIDDSGRIVGTSKTVRDISEQVVIERQMKELNAHLEE 477

Query: 581 ESSHKSDFLARVSHEIRTPLTAI 603
             + ++  L R    +RT L A+
Sbjct: 478 MVATRTAELDRARRVLRTVLDAV 500


>gi|307822326|ref|ZP_07652558.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
           SV96]
 gi|307736892|gb|EFO07737.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
           SV96]
          Length = 1187

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 119/659 (18%), Positives = 231/659 (35%), Gaps = 54/659 (8%)

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLT 244
                   A  +  + K+  L +                        +      +  +  
Sbjct: 165 RTRAETAHAALRDSEAKYRLLADNAADCIFWVDIDGRYKYISPACEQISGHTPEEFLADP 224

Query: 245 EY---YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301
           E      H DD +   ++   ++       +      +        +   + + + E   
Sbjct: 225 ELMVNIIHLDDRMAYRQHFEDSTNTDRGELEVRIMHKDGGVRWIGHHCKPIHDENGEYLG 284

Query: 302 YLSHRNHPSLSAYFDEGENLTPETV----DKCPIPFFVYSH--GNLFYANPSFLLLTKYK 355
                   +     ++  + + E      +     F +     G +   NP+  ++  Y 
Sbjct: 285 QHGANRDITARKRVEQELHDSSERFRVASESIRDAFILIDGKEGKIVLWNPAAAVMFGYT 344

Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR-SDRTCIAASARLHTIQWNRENSLAMT 414
             + I +   L  L+  P+  +  A+         +   +  +  L  ++ N E      
Sbjct: 345 KNEAIGLP--LHQLIGPPRFHEAAAVGLAHFAHTGEGAAVGRTLELPALRRNGEEFSVEL 402

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII 474
            +      Q        GI  +  + +  + ++     +L   +E + + I I + +G I
Sbjct: 403 SLSAI---QLGGQWHAAGIVRDITERKQAEEQLR----KLAQAVEQSPESIIITDLDGNI 455

Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
              N A +K  GY  E+I+ +   +     TP      L + +S    QT +   +   K
Sbjct: 456 EYVNEAFAKNSGYCHEEIIGQNPRLLNSGKTPKESYTALWDAISNG--QTWKGEFINKRK 513

Query: 535 EEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKI------------- 577
           +        II  +   +     Y     DI+E + +  +L   +               
Sbjct: 514 DGSEYVDFAIITPIRQPNGGITHYVAVQEDITEKRHQGEELDQHRHHLEELVASRTAELE 573

Query: 578 -----AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
                A+  +  KS FLA +SHEIRTP+ AIIG + +++        + R     + ID 
Sbjct: 574 SARTSADAANQSKSAFLANMSHEIRTPMNAIIGLTYLLRQNTPTSEQSVR----LDKIDA 629

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
           +   +L I+ND+LD+SKIE+G++ L     SL   +    SL+   +  K + I     +
Sbjct: 630 AALHLLSIINDILDLSKIEAGRLELEQTDFSLAAVLDHISSLITDQSRAKGLTIEMDNGD 689

Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGM 748
               +  D   ++Q  LN   NA+ FT  G  I +        +    V   V+DTG+G+
Sbjct: 690 VPLWLRGDPTRLRQAMLNYAGNAVKFTERG-TIWLRARLLKETDAGLLVRFEVQDTGIGI 748

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
               L    + F Q   S   +  GTGLGL + + + +   G+  + S   +G+     
Sbjct: 749 AAENLPTLFEVFAQADISTTRKYGGTGLGLAITRRLANIMGGEVGVESALGQGSTFWFT 807



 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 48/419 (11%), Positives = 107/419 (25%), Gaps = 19/419 (4%)

Query: 51  QSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYA 110
           +     + +   ++    DSE  +            W +D  G  K IS    +  G+  
Sbjct: 159 EDALAARTRAETAHAALRDSEAKYRLLADNAADCIFW-VDIDGRYKYISPACEQISGHTP 217

Query: 111 FKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYS 170
            + +      V+ I   D   +        NT  G+  +  +        I     PI+ 
Sbjct: 218 EEFLADPELMVNIIHLDDRMAYRQHFEDSTNTDRGELEVRIMHKDGGVRWIGHHCKPIHD 277

Query: 171 RNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP 230
            N E+ G  G                     ++F    E  +    +   K       +P
Sbjct: 278 ENGEYLGQHGAN--RDITARKRVEQELHDSSERFRVASESIRDAFILIDGKEGKIVLWNP 335

Query: 231 PPHLR---MKNKVSSLTEYYAHKDDVLKTEKYPLLT-----SEESSLPEQEDFHTINLNQ 282
              +     KN+   L  +               L       E +++    +   +  N 
Sbjct: 336 AAAVMFGYTKNEAIGLPLHQLIGPPRFHEAAAVGLAHFAHTGEGAAVGRTLELPALRRNG 395

Query: 283 YTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNL 341
                            +         +     +E      + V++ P    +    GN+
Sbjct: 396 EEFSVELSLSAIQLGGQWHAAGIVRDITERKQAEEQLRKLAQAVEQSPESIIITDLDGNI 455

Query: 342 FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401
            Y N +F   + Y   + I         L     +   +   +    S+           
Sbjct: 456 EYVNEAFAKNSGYCHEEIIGQNP----RLLNSGKTPKESYTALWDAISNGQTWKGEFI-- 509

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
             + +    +    I                ++ +  + R    +++     L  ++ +
Sbjct: 510 NKRKDGSEYVDFAII-TPIRQPNGGITHYVAVQEDITEKRHQGEELDQHRHHLEELVAS 567



 Score = 83.5 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 21/202 (10%), Positives = 55/202 (27%), Gaps = 12/202 (5%)

Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMP---QNGIEPEDVDTRINKRKMEIEVMQ 453
            A     + + E +L        +  +                          +     +
Sbjct: 122 EADERRARQSAETALRENQTAILEEQRQARLAALNLMEDALAARTRAETAHAALRDSEAK 181

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP--FTVFLEQNTPSVMNH 511
              + +  +D I  ++ +G     + A  ++ G+  E+ L  P      +  +       
Sbjct: 182 YRLLADNAADCIFWVDIDGRYKYISPACEQISGHTPEEFLADPELMVNIIHLDDRMAYRQ 241

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQE 567
           +  +  + D     E       K+  +  +    K +   +           DI+  K+ 
Sbjct: 242 HFEDSTNTDR---GELEVRIMHKDGGVRWIGHHCKPIHDENGEYLGQHGANRDITARKRV 298

Query: 568 KNKLSHAKKIAEKESSHKSDFL 589
           + +L  + +     S    D  
Sbjct: 299 EQELHDSSERFRVASESIRDAF 320


>gi|288962258|ref|YP_003452553.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
 gi|288914524|dbj|BAI76009.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
          Length = 1135

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 107/618 (17%), Positives = 232/618 (37%), Gaps = 28/618 (4%)

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
           +   +   +     + +    + ++  P   LR  + +  +          L +    + 
Sbjct: 212 RARSMMNDRIIGRDIGEAPMLVMARHQPAGFLRSVSVIDGI--SRLQSFRTLSSYPLIVS 269

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
            + + +    + +    +           L   +             +L+      E   
Sbjct: 270 AAFDEAAFLADTWRRQQIYLLAAAVCSACLIGLA--LLATRQTARLSTLARQLASSEARF 327

Query: 323 PETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
            +  +     F+      L +++ +  L+    +             L  P  +      
Sbjct: 328 RDQAETASDWFWEMDAD-LRFSDFAGPLVPHIANDTLPTGLRREDVALREPGDAAKWDQH 386

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
              + R +      + R   +        +++  P    +         G   +  +  +
Sbjct: 387 RQTMERREPFR---NFRYRVMTAAGLRYFSVSGRPIFGQDGG--FQGYRGSATDITEREL 441

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
              ++     +  ++ EA    I  I+  G + + NRA  +LFGY   +++  P T  + 
Sbjct: 442 AANRLASSEARYRAMFEAVGQPIVTIDEHGTVDAFNRAAERLFGYRAAEVVGGPMTRLMP 501

Query: 503 QNTPSVMNHYLTEILSLD----LRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCYSL 556
               +V +  L      D    + +   +   G  K+     L   +   +       + 
Sbjct: 502 SAVGAVHDGLLATYREGDGEGSIPRVGMRELTGRRKDGGEFPLEATLAGWREGDRRYVTG 561

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            + D++  ++ +  L  AK+ A++ +  K +FLA +SHEIRTP+  ++G   +++    G
Sbjct: 562 ALRDVTVQREIEASLRRAKEAADQANRAKGEFLATMSHEIRTPMNGVLGALALVE----G 617

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
           P  N    +  +  +RSGN +L I++D+LD+SK+E+GK  +      L   + ++I L++
Sbjct: 618 PNLNDEQRQLLDVANRSGNALLQIIDDILDLSKLEAGKAEVEPVDFELRAVLRDSIDLLE 677

Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
             A  + + +       +P  + ADLR ++Q+ +N++ NA+ FT  GG + +      + 
Sbjct: 678 PAACGRGLFLTQEVEPAVPDHVRADLRRIRQVLVNLVGNALKFTNRGG-VAVRVGLEGDA 736

Query: 736 ------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
                  +   V DTG+G+         + F Q  +S   R  GTGLGL +++ +V    
Sbjct: 737 VADGSFLLRFEVADTGIGIPEEVQPTLFRRFTQADSSTTRRFGGTGLGLAISRELVTLMG 796

Query: 790 GKFYIFSTPAKGTLIEII 807
           G   + S   KG+     
Sbjct: 797 GTIGVASAEGKGSTFWFT 814



 Score = 65.0 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 23/289 (7%), Positives = 66/289 (22%), Gaps = 17/289 (5%)

Query: 55  TDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLK-EISEELPKTIGNYAFKM 113
           T Q     +    L S      D       + W +DA           +P    +     
Sbjct: 307 TRQTARLSTLARQLASSEARFRDQAETASDWFWEMDADLRFSDFAGPLVPHIANDTLPTG 366

Query: 114 IGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNR 173
           +      + +       +     ++R+  +              Y  +  +  PI+ ++ 
Sbjct: 367 LRREDVALREPGDAAKWDQHRQTMERREPFRNFRYRVMTAAGLRYFSV--SGRPIFGQDG 424

Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHS----------SVEKEKYD 223
            F G+RG                    + ++  + E                +  +    
Sbjct: 425 GFQGYRGSAT--DITERELAANRLASSEARYRAMFEAVGQPIVTIDEHGTVDAFNRAAER 482

Query: 224 IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY 283
           +F  ++         ++        H   +    +     S       +      +  ++
Sbjct: 483 LFGYRAAEVVGGPMTRLMPSAVGAVHDGLLATYREGDGEGSIPRVGMRELTGRRKDGGEF 542

Query: 284 TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP 332
             +      +    +           ++    +       E  D+    
Sbjct: 543 PLEATLAGWRE--GDRRYVTGALRDVTVQREIEASLRRAKEAADQANRA 589



 Score = 48.1 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 36/337 (10%), Positives = 82/337 (24%), Gaps = 22/337 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID HG +   +    +  G  A +++G  +  +        ++ +    +  +       
Sbjct: 467 IDEHGTVDAFNRAAERLFGYRAAEVVGGPMTRLMPSAVGAVHDGLLATYREGDGEGSIPR 526

Query: 149 L-------WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
           +          +G    +   LA      R R  +G      +    V  +  A  +R  
Sbjct: 527 VGMRELTGRRKDGGEFPLEATLAGWREGDR-RYVTGA-----LRDVTVQREIEASLRRAK 580

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
           +     +  K    +    +              +  +  +L +      DV       L
Sbjct: 581 EAADQANRAKGEFLATMSHEIRTPMNGVLGALALV--EGPNLNDEQRQLLDVANRSGNAL 638

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG-EN 320
           L   +  L +                    +  +S +  E  +      L+   +    +
Sbjct: 639 LQIIDDIL-DLSKLEAGKAEVEPVDFELRAVLRDSIDLLEPAACGRGLFLTQEVEPAVPD 697

Query: 321 LTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
                + +            L + N   + +      D +     L     A        
Sbjct: 698 HVRADLRRIRQVLVNLVGNALKFTNRGGVAVRVGLEGDAVADGSFLLRFEVADTGIGIPE 757

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
                L+R         A   T +      L +    
Sbjct: 758 EVQPTLFRRF-----TQADSSTTRRFGGTGLGLAISR 789


>gi|312886589|ref|ZP_07746197.1| PAS/PAC sensor hybrid histidine kinase [Mucilaginibacter paludis
           DSM 18603]
 gi|311300992|gb|EFQ78053.1| PAS/PAC sensor hybrid histidine kinase [Mucilaginibacter paludis
           DSM 18603]
          Length = 1025

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 121/739 (16%), Positives = 258/739 (34%), Gaps = 35/739 (4%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
           TW ID    + + S+ + +        MI   +                + L +  T  G
Sbjct: 152 TWEIDLQTGVVKWSDGMSRLHEMQPGGMID--IESAIVFYEASSRLVFKEALDKALTV-G 208

Query: 146 KTTLWPIEGTNLY---VPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL-- 200
           +     ++        + +  +   +     +   +R  G++               +  
Sbjct: 209 EPYHIELQLLTAKGNLIWVRSSGSLMM-EKGKP--YRLCGVLQDITEQKQIEERNSVIFE 265

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
               +HL   + G          +   ++    L     + S       +  + K +K  
Sbjct: 266 QSTDAHLLIDETGIIDCNNAAVQMLRCENKAHLLSCHPAIFSPEYQPDGQKSIDKAKKMD 325

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTL--QNNSKESFEYLSHRNHPSLSAYFDEG 318
            L  E+ +   +     ++  +   +     +           +                
Sbjct: 326 SLAYEKGTHRFEWVHQRMDGKEIFVEVTLNAIAFNQKRVLLVVWHDITQRKKAEEKLKRN 385

Query: 319 ENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
           E+L  ET        +      G   + +     +   + V     AG  +   D     
Sbjct: 386 ESLLSETQALTHSGSWEIDLKTGR-NFWSAEAFRIFGLEPV----GAGPDTEEFDRMIHP 440

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           D+       + ++ +  + ++  L  I    E             N         G   +
Sbjct: 441 DDREKYINAIKQALKGGLTSNFDLRIILKTGELKYIQAI-GKPFYNDQGVATRLYGAIID 499

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
               +  +  + ++  QL + +E +   IA+ ++E   ++ +    + +    ++I+   
Sbjct: 500 ITKYKKAEEAILMKQAQLNTFIEVSPAPIAVFDKEMRYIAASDLWKQDYKLERKNIIGVC 559

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCY 554
                 + +           ++ ++    E   +      +     I             
Sbjct: 560 HYDLFPEASLH-WRQIHERGMAGEILSNTEDSFVRKNGRTQWFRWEIRPWFETDKEIGGI 618

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
            +    I++ K  +  L  AK+ AE  +S K+ FL+ +SHEIRTP+ A+IGF+ ++    
Sbjct: 619 IMFTEIITDRKLAEQALIQAKEQAENAASAKTQFLSTMSHEIRTPMNAVIGFTHLLLQNP 678

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                    +EY   +  SG  +L ++ND+LD SKIE+GK+       +L + V    + 
Sbjct: 679 -----REDQVEYLKILKFSGENLLVLINDILDFSKIEAGKLEFEHVDFNLKDLVRNIRAA 733

Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
           +Q  A EK I ++     ++P+ ++ D   + QI  N++SNA+ FT  G ++++S +  S
Sbjct: 734 MQQRAIEKGIQLKLLVDEDLPQAVIGDPVRLGQILSNLISNALKFTSVG-KVVVSASLVS 792

Query: 734 NEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
                  V   V+DTG+G+   + +   + F Q  +    +  GTGLGL + K +++   
Sbjct: 793 RNNEYTIVSFEVKDTGIGIPTEKQQAIFESFTQASSDTTRKYGGTGLGLTITKRLLEMQG 852

Query: 790 GKFYIFSTPAKGTLIEIIF 808
               + S P KG+      
Sbjct: 853 SAIQLDSEPGKGSTFSFNL 871


>gi|294507653|ref|YP_003571711.1| two-component sensor histidine kinase [Salinibacter ruber M8]
 gi|294343981|emb|CBH24759.1| two-component sensor histidine kinase [Salinibacter ruber M8]
          Length = 936

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 131/749 (17%), Positives = 254/749 (33%), Gaps = 53/749 (7%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV---SDILHIDPNNHIG----DLLKRQ 140
            +D  G   + +  + + + +    + G    ++         D           +L+  
Sbjct: 208 RLDQEGTFVQANGRVAEVLKSSEDDICGRTYAELEWTLTPFGADTMPEEAVPFDHVLETG 267

Query: 141 NTWYGKTT--LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
            +         WP +GT   + +  +  P+ +   +  G      +             +
Sbjct: 268 ASVRDVELSVQWP-DGTQRVLSV--SGAPLQAE-GKGPGA--VFHLRDITDRVRREQTLR 321

Query: 199 RLDKKFSHLHEIKKG---HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255
           R+ +++  L +           E  ++ +   Q         + V   T +    D++ +
Sbjct: 322 RVKERYQTLVDNFPDGGVFLFGEDLRFRLAGGQRLESAGLPPSNVEGKTPHDLFPDEIAR 381

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
                       +L  ++  +         +     ++  + +    L+     +     
Sbjct: 382 EHVTYF----RRALDGEKHVYEQEYQGQHYRVQTLPIRGKAGDVISGLAVSQDITERKER 437

Query: 316 DEGENLTPETVDKCPIPFFVYS--------HGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
           +     +           F+                 NP +     +   +         
Sbjct: 438 ERRLRQSETLFQNAQDALFLLDVKEEEEAWAFRYRRVNPVYEEQFGHAEAEIRGR----- 492

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
               +P+       + +M+ +  R      ARL+    + E                   
Sbjct: 493 ----SPREVFGGDARRLMMEKCRRCVQHREARLYEETISLEGRETYWKTRIAPVLVEGRV 548

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
               GI  +  +    +  +E +        E  S G    +      +  +   ++ GY
Sbjct: 549 RQIVGITRDVTEQHRRQEALERQNDLFDRAQEIASVGAWEYDARADASNWTKKAYEILGY 608

Query: 488 PVE-DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
           P + D        +        +   L + L       LE         +++   RI  +
Sbjct: 609 PPDADPNPSTAVGYYHPEDQPRVQKALRDALQEGKPSDLEVRV---AAGDEVRWARIRGE 665

Query: 547 KLPFSSCYSLT---MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
                         + DI+E KQ +  L  AK+ AE+ S  KS  LA +SHEIRTPLT+I
Sbjct: 666 PQWEDGEVVRIRGTIQDITERKQRERALREAKQEAEEASQLKSSLLANMSHEIRTPLTSI 725

Query: 604 IGFSE--VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           IGF+E    + +      +    +YA  I++SG  +L+ +  +L++SK+E+G+M L   P
Sbjct: 726 IGFAEATNAEAKELDLPDDSPLPKYAELIEQSGRRLLETLEGVLNLSKLEAGEMELEARP 785

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIA-LNILSNAIHFTP 720
           V L E        ++  A EK + ++           AD   V QI   N+LSNA+ +T 
Sbjct: 786 VDLVEEAEAVAEELRPRAEEKEVSLQLETEAA--WAEADKGGV-QILARNLLSNAVKYTE 842

Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
           +GG++ + T +     V   V DTG+GM     E   +PF Q         +GTG+GL +
Sbjct: 843 AGGRVRLRT-YREEGAVAFEVEDTGIGMDPETAEGLFEPFRQASEGFSREYQGTGIGLAV 901

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            K       G   + +   +GT I +  P
Sbjct: 902 TKETTKQMEGSIDVETEKGEGTRITVWLP 930



 Score = 68.1 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 19/180 (10%), Positives = 51/180 (28%), Gaps = 10/180 (5%)

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468
            +  +   P  K            +      +   +  +  +   L  ++E +   I  +
Sbjct: 150 TAGGLFLTPAPKLQPPVVLAIMVVVGLTVSVSLRGRMTIRRQRDLLDRLVETSPGAIVRL 209

Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVF------LEQNTPSVMNHYLTEILSLDLR 522
           ++EG  +  N  V+++     +DI  + +            +T          +L     
Sbjct: 210 DQEGTFVQANGRVAEVLKSSEDDICGRTYAELEWTLTPFGADTMPEEAVPFDHVLETG-A 268

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAE 579
              +        +     L +    L            + DI++  + +  L   K+  +
Sbjct: 269 SVRDVELSVQWPDGTQRVLSVSGAPLQAEGKGPGAVFHLRDITDRVRREQTLRRVKERYQ 328



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 42/469 (8%), Positives = 112/469 (23%), Gaps = 39/469 (8%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTWY 144
            +        +    +  ++ G     + G    D+        +       L  +   Y
Sbjct: 339 VFLFGEDLRFRLAGGQRLESAGLPPSNVEGKTPHDLFPDEIAREHVTYFRRALDGEKHVY 398

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            +       G +  V      LPI  +  +     G  +        +     ++ +  F
Sbjct: 399 EQEYQ----GQHYRVQT----LPIRGKAGDVI--SGLAVSQDITERKERERRLRQSETLF 448

Query: 205 SHLHEIKKGHSSVEKEKY------DIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
            +  +        E+E+        +                          D      +
Sbjct: 449 QNAQDALFLLDVKEEEEAWAFRYRRVNPVYEEQFGHAEAEIRGRSPREVFGGDARRLMME 508

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
                 +       E+  ++   +   K     +        + +      +      E 
Sbjct: 509 KCRRCVQHREARLYEETISLEGRETYWKTRIAPVLVE-GRVRQIVGITRDVTEQHRRQEA 567

Query: 319 ENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS---TLLDAPKL 375
                +  D+      + S G   Y   +       K+ + +          +       
Sbjct: 568 LERQNDLFDRAQE---IASVGAWEYDARADASNWTKKAYEILGYPPDADPNPSTAVGYYH 624

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
            ++       L  + +    +   +       +           +  +  E +   G   
Sbjct: 625 PEDQPRVQKALRDALQEGKPSDLEVRVA--AGDEVRWARIRGEPQW-EDGEVVRIRGTIQ 681

Query: 436 EDVDTRINKRKMEIEVMQLC-------SILEATSDGIA--IINREGIILSTNRAVSKLFG 486
           +  + +  +R +     +         S+L   S  I   + +  G   +TN    +L  
Sbjct: 682 DITERKQRERALREAKQEAEEASQLKSSLLANMSHEIRTPLTSIIGFAEATNAEAKEL-- 739

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
             + D    P    L + +   +   L  +L+L   +  E        +
Sbjct: 740 -DLPDDSPLPKYAELIEQSGRRLLETLEGVLNLSKLEAGEMELEARPVD 787


>gi|127511393|ref|YP_001092590.1| PAS/PAC sensor hybrid histidine kinase [Shewanella loihica PV-4]
 gi|126636688|gb|ABO22331.1| multi-sensor hybrid histidine kinase [Shewanella loihica PV-4]
          Length = 1230

 Score =  368 bits (944), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 121/594 (20%), Positives = 204/594 (34%), Gaps = 46/594 (7%)

Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291
           P  R+ + +   ++        +     P          E + +           +    
Sbjct: 381 PASRLLSHLEGCSQEPRKPPAKITQGWEPWFQLVSRIFEENQQY------TRHLAEQNRR 434

Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLL 350
           L N      E L          Y      L    +D  P    F    G     N S   
Sbjct: 435 LDNLVARRTERLKETTERREREYA-----LLRSLLDSIPEAIIFKDKEGKYLGCNKSAER 489

Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
           +  Y   + I       T  +          + +      R                   
Sbjct: 490 MLGYTESEMIGQDSQTMTSNEQSMRIRAEDERVLSERTPLRYQEKVEL--------AGKP 541

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA--II 468
           + +  +     N+  E +    +  +      +  ++ +   +    ++A  DG+    +
Sbjct: 542 VLLDTLKLPFYNRRGELLGLIAVWRDVTREYESAEQLRLSEERYHLAMDAVEDGLWDWYL 601

Query: 469 NREGIILSTNRAVSKLFGYPVED--ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
           + E II   N A   + GY   +   L       +  +    +  Y  + L+  +    +
Sbjct: 602 DSEQII--CNPAYYSMLGYKSNEFPALVSTIDELVHPDDRIRVQEYREQYLADPI-GAYD 658

Query: 527 KITLGSTKEEKLLSLR-----IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE 581
                  K      +      +             T  DI+  K  +  L  AK+ AE  
Sbjct: 659 VEFRMRGKSGMYHWVLSRGRVVEFTSDNQPKRMVGTHKDITRHKSNEVALLEAKQDAESA 718

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
           + +KS+FLA +SHEIRTP+ AIIG  ++    +  P    +  +Y +    S   +L I+
Sbjct: 719 NLYKSEFLANMSHEIRTPMNAIIGMLQLASRTQLTP----QQADYLDKAGFSAQSLLRII 774

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-AD 700
           ND+LD SKIE+GK+ L      LD+ +  A+ L  L A EK + +          IL  D
Sbjct: 775 NDILDFSKIEAGKLELERVAFPLDKVLDHALDLNALKAQEKGVELLLYAPVTAGLILEGD 834

Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE------VILRVRDTGVGMTNYELE 754
              + Q+ +N+LSNA+ FT SG    I        E      +   VRDTG+G++  + E
Sbjct: 835 PLRLGQVLINMLSNAVKFTQSG---EIELGCEDVGERDHRITLKFWVRDTGIGISKEQQE 891

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
                F Q   S   +  GTGLGL ++K +V    G   + S    G+      
Sbjct: 892 SLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGTMQVQSELGVGSTFSFTI 945



 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 44/347 (12%), Positives = 96/347 (27%), Gaps = 30/347 (8%)

Query: 9   NPEDILTSNCKGNTQDLSK--KKIDNGFE-----TEKSKKENPCHDSFEQSNFTDQNQES 61
           NP   L S+ +G +Q+  K   KI  G+E       +  +EN  +           +   
Sbjct: 380 NPASRLLSHLEGCSQEPRKPPAKITQGWEPWFQLVSRIFEENQQYTRHLAEQNRRLDNLV 439

Query: 62  VSNTNYLDSENTFVFDP--------IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM 113
              T  L                          +  D  G     ++   + +G    +M
Sbjct: 440 ARRTERLKETTERREREYALLRSLLDSIPEAIIFK-DKEGKYLGCNKSAERMLGYTESEM 498

Query: 114 IGM-RLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172
           IG       S+   +        +L  +     +     +E     V +D   LP Y+R 
Sbjct: 499 IGQDSQTMTSNEQSMRIRAEDERVLSERTPLRYQE---KVELAGKPVLLDTLKLPFYNRR 555

Query: 173 REFSGFRGFGIVHVN-RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231
            E  G     +     R       L    ++    +  ++ G      +   I    +  
Sbjct: 556 GELLGL--IAVWRDVTREYESAEQLRLSEERYHLAMDAVEDGLWDWYLDSEQIICNPAYY 613

Query: 232 PHLRMKNK----VSSLTEYYAHKDDVLKTEKYPL--LTSEESSLPEQEDFHTINLNQYTK 285
             L  K+     + S  +   H DD ++ ++Y    L     +   +      +   +  
Sbjct: 614 SMLGYKSNEFPALVSTIDELVHPDDRIRVQEYREQYLADPIGAYDVEFRMRGKSGMYHWV 673

Query: 286 KQYFGTLQ-NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI 331
                 ++  +  +    +      +     +       +  +   +
Sbjct: 674 LSRGRVVEFTSDNQPKRMVGTHKDITRHKSNEVALLEAKQDAESANL 720


>gi|182411917|ref|YP_001816983.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
 gi|177839131|gb|ACB73383.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
          Length = 1313

 Score =  368 bits (944), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 142/765 (18%), Positives = 271/765 (35%), Gaps = 61/765 (7%)

Query: 79   IPRTVRFTWNIDAH-------GY-----LKEISEELPKTIGNYAFKMIGMRLCDVSDILH 126
               T    W +DA        G      +  ++ EL         +        +S    
Sbjct: 284  GALTAEAVWEVDAGSQWQDSSGRLGILSIAVLNPELRTIWVYPREE----NATAISLDHA 339

Query: 127  IDPNNHIGDLLKR--QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIV 184
            +DP         R  +      TT     G  + +       PI  R    SG+     +
Sbjct: 340  MDPVRQAAIAAARINRGPVISGTTELGGRGHGVVI-----YAPI-IRQGVASGYVAAEFL 393

Query: 185  HV---NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS 241
            +    + V  + +     L +      E  +     +++++D        P    + +V+
Sbjct: 394  YRTFFSSVIAERKIEDGHLVEVKIGAEEAYRTVLQPKEQRHDALLIDKTYPMFDRRVRVT 453

Query: 242  SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301
                  A ++D     +  L      +L      H     +  +                
Sbjct: 454  MTPRTEALQNDRRYLPELALGAGIGIALLLGLSVHLARGARAGQHAA------ELSNKKL 507

Query: 302  YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDI 360
            +  +     + A     +      +D   I  F ++      Y +     +  Y+     
Sbjct: 508  HAENEERRRIEARLKVSDERLRLALDSTQIGIFEWNVAAGHVYYSSGLWAMLGYEHSRMS 567

Query: 361  EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
                   +L+    L          L   +                 E     T      
Sbjct: 568  ATVAAWQSLIHPDDLPTYRRRVDSQL---NGVASFIEPEFRVKSHGGEWRWVYTRSKTVA 624

Query: 421  ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC--SILEATSD-GIAIINREGIILST 477
            A+         G   +    R  ++ +     +    S++ A +D  + II+  G I   
Sbjct: 625  ASTSGRPTRIIGTVQDITARREAEQALRESQAETRKLSLVAAKTDNPVLIISPAGSIEWV 684

Query: 478  NRAVSKLFGYPVEDILRK-PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
            N + S++  Y +++++ + P        T +     +   ++     + +   +  +K  
Sbjct: 685  NESFSRVMEYSLDEVVGRSPIDFVAAAETDARTLQEIDAAIAQGRAHSGD--VVTHSKRG 742

Query: 537  KLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
            +   LR+ ++ +   +     + +   DI+     +  L  AK  A++ S  KSDFLA +
Sbjct: 743  RKYHLRVELQPVRNDAGQLQNFIVIETDITARVDTELALRRAKTEADEASRAKSDFLASM 802

Query: 593  SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
            SHEIRTP+  +IG + ++      P       ++ N I  SG  +L I+ND+LD SKIES
Sbjct: 803  SHEIRTPMNGVIGMTSLLMETDLSP----EQRDFVNTIRTSGEALLTIINDILDFSKIES 858

Query: 653  GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNI 711
            GKM+L   P  L   + E++ L  L A+ K + +    A ++P  I+ D+  ++QI +N+
Sbjct: 859  GKMDLEHLPFELATCLEESLDLFALQASAKHLELAYHIAPDVPEWIIGDITRLRQIVVNL 918

Query: 712  LSNAIHFTPSGGQIIISTTHTSNEE--------VILRVRDTGVGMTNYELEKAMKPFGQI 763
            ++NA+ FT +G  I I                 +   VRDTG+G+    L++  K F Q+
Sbjct: 919  VNNAVKFTSAGS-IAIEVRRRPPTVPANLKRFPLEFVVRDTGIGIPAERLDRLFKAFSQV 977

Query: 764  PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
             +S   +  GTGLGL + + +     G   + S   +G+      
Sbjct: 978  DSSTTRKYGGTGLGLAICQRLSILMGGGIRVESKVGEGSSFIFTI 1022


>gi|119488052|ref|ZP_01621496.1| Periplasmic Sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106]
 gi|119455341|gb|EAW36480.1| Periplasmic Sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106]
          Length = 1106

 Score =  368 bits (944), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 123/710 (17%), Positives = 247/710 (34%), Gaps = 89/710 (12%)

Query: 190 DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH 249
             +   L K  ++    L     G      +  + F        L  ++     T     
Sbjct: 177 KREEEQLRKSEERWQLALRGSNDGIWDWNVQTNESFYSPRWKEMLGYEDHEIGNTLDEWS 236

Query: 250 KDDVLKTEKYPLLTSEE------SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303
           +    +     L   E+      +    +      N            L + + E+  + 
Sbjct: 237 ERVHPEDLPPTLAAIEDHIKRKTTYFTFEFRMRCKNGEYKWILSRGQALFDENGEAVRFA 296

Query: 304 SHRNHPSLSAYFDEG---ENLTPETVDKCPIPFFVYSHGNLFYAN--------------- 345
                 S     +E           + +    F         +                 
Sbjct: 297 GSHADISDRKRAEEALEYRAQKDNLLSRISEQFLNQDTDTAIHLTLEATGEFMDCDRVYV 356

Query: 346 ---------------------PSFLLLTKYKSVDDI---------EIAGGLSTLLDAPKL 375
                                PSF+   +   ++                +S++   P  
Sbjct: 357 FRYTDNHTKLTQTHEWCALNVPSFIQDYQGVPIEVFPWFVQTILKGKPFQVSSITQLPDE 416

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTI-QWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
           ++    +   L       +        + Q      L     P     +    + + G  
Sbjct: 417 AEAEKAELKRLTTQSLLILPMQLTGADVNQNVGFIGLDNVRSPRVWTQEDINLVQRVGAL 476

Query: 435 PEDVDTR-INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
                 +   +R +     +   IL+   + I  I+    I   N+   K+FGY   ++L
Sbjct: 477 IAIAQAKNEAERALRDSEARFAGILDNADEAIISIDETQHITLFNQGAEKIFGYSQAEVL 536

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI---TLGSTKEEKLLSLRIIIKKLP- 549
            +   + L        + ++ +     L            G  ++ +   +   I KL  
Sbjct: 537 GQALDILLPLRFVDAHHQHIQDFTQAPLSARKMSERNTVFGRRRDGEEFPIEASISKLEL 596

Query: 550 -FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                Y+  + DI++ K+ + +L  AK  A+  S  KS+FLA +SHE+RTPL  I+G+++
Sbjct: 597 GNKRIYTAFVRDITKRKRAEEELKRAKAAADSASRAKSEFLANMSHELRTPLNGILGYAQ 656

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
           +++  +      P+  +    I + G+ +L ++ND+LD+SKIE+ K+ LH         +
Sbjct: 657 ILQRDKNIT---PQQRKGLGVIKQCGSHLLTLINDILDLSKIEAQKLELHPTDFDFLTFL 713

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIII 727
                + ++ A +K I      + ++P+ + AD + V+Q+ +N++SNAI FT +G  +I 
Sbjct: 714 CGVSEICRVRAEQKNISFTYQTSQHLPKSLHADEKRVRQVLINLISNAIKFTDTG-CVIF 772

Query: 728 STTHTSNEE----------------------VILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           +T    N                        +   V+DTG+G+ + ++EK   PF Q+  
Sbjct: 773 TTELIENGMAKVCDVGHPDQCFTPPQCATHKIRFLVQDTGIGIPSEQIEKIFIPFEQV-G 831

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            +  + EGTGLGL + + +V        + S   KG+   +   L+++S 
Sbjct: 832 DRFRKAEGTGLGLAITQKIVSMMGSTLNVESVVGKGSKFWVDLDLHESSE 881



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 48/448 (10%), Positives = 99/448 (22%), Gaps = 89/448 (19%)

Query: 96  KEISEELPKTIGNYAFKMIGMR---LCDVSDILHIDPN-NHIGDLLKRQNT-WYGKTTLW 150
              S    + +G      IG       +      + P    I D +KR+ T +  +  + 
Sbjct: 211 SFYSPRWKEMLGYE-DHEIGNTLDEWSERVHPEDLPPTLAAIEDHIKRKTTYFTFEFRMR 269

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
              G   Y  I      ++  N E   F G                 +   +K + L  I
Sbjct: 270 CKNGE--YKWILSRGQALFDENGEAVRFAGSHA--DISDRKRAEEALEYRAQKDNLLSRI 325

Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK------------ 258
            +   + + +     +           ++V        H       E             
Sbjct: 326 SEQFLNQDTDTAIHLTL-EATGEFMDCDRVYVFRYTDNHTKLTQTHEWCALNVPSFIQDY 384

Query: 259 ------------------YPLLTSEESSLPEQEDFHTINLNQYT------KKQYFGTLQN 294
                              P   S  + LP++ +     L + T                
Sbjct: 385 QGVPIEVFPWFVQTILKGKPFQVSSITQLPDEAEAEKAELKRLTTQSLLILPMQLTGADV 444

Query: 295 NSKESFEYLSHRNHPSLSAYFD-------------------------EGENLTPETVDKC 329
           N    F  L +   P +    D                         + E      +D  
Sbjct: 445 NQNVGFIGLDNVRSPRVWTQEDINLVQRVGALIAIAQAKNEAERALRDSEARFAGILDNA 504

Query: 330 PIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL---------------DAP 373
                 +    ++   N     +  Y   + +  A  +   L                  
Sbjct: 505 DEAIISIDETQHITLFNQGAEKIFGYSQAEVLGQALDILLPLRFVDAHHQHIQDFTQAPL 564

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
                +    V   R D       A +  ++   +           K  +  E + +   
Sbjct: 565 SARKMSERNTVFGRRRDGEEFPIEASISKLELGNKRIYTAFVRDITKRKRAEEELKRAKA 624

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEAT 461
             +      ++  +     +L + L   
Sbjct: 625 AADSASRAKSEF-LANMSHELRTPLNGI 651



 Score = 39.6 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 16/143 (11%), Positives = 37/143 (25%), Gaps = 12/143 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID------PNNHIGDLLKRQNT 142
           ID   ++   ++   K  G    +++G  L  +  +  +D       +     L  R+ +
Sbjct: 511 IDETQHITLFNQGAEKIFGYSQAEVLGQALDILLPLRFVDAHHQHIQDFTQAPLSARKMS 570

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
                     +G    +   ++ L +         +  F  V             KR   
Sbjct: 571 ERNTVFGRRRDGEEFPIEASISKLEL----GNKRIYTAF--VRDITKRKRAEEELKRAKA 624

Query: 203 KFSHLHEIKKGHSSVEKEKYDIF 225
                   K    +    +    
Sbjct: 625 AADSASRAKSEFLANMSHELRTP 647


>gi|294665893|ref|ZP_06731160.1| two-component system sensor protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292604348|gb|EFF47732.1| two-component system sensor protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 1364

 Score =  368 bits (944), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 130/706 (18%), Positives = 256/706 (36%), Gaps = 65/706 (9%)

Query: 164 AALPIYSRNREFSGFR-----GFGIV----HVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214
           +  P+ +     SG+R     GF ++            P+               +++  
Sbjct: 185 SGAPVMTSPISLSGYRVPNESGFLVLLAVYREGMPLQTPQQRMLATSGWVYAPFSVEQMV 244

Query: 215 SSVEKEKYDI-FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE 273
            S   E+ D+               +  +     A +  V++       T   ++ P   
Sbjct: 245 RSALGERDDVALDLSDRNEPTHNFYRSGTPASDSALRPPVVRLLPIYGRTWVITAHPTAG 304

Query: 274 DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF 333
              ++N +            +    +   L   N         +   L            
Sbjct: 305 FVASLNQSSPWLIGGLVMAASVLFAALLVLYFSNGLRREEVLRKQMELAALVSHSSEAIV 364

Query: 334 FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393
                G + + NP+   +  Y + + I+    L+TLL     + +          +D   
Sbjct: 365 AETPDGRITHWNPAAEAMFGYTADEAIDQ--DLTTLLSPQPYAMSEVD------HADAAL 416

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK------- 446
              ++   T++    + + +                 +    +  D   + ++       
Sbjct: 417 AGNASAAQTMRHRDGHQVHVLASKAPIIESEGTLSGHSHFFRDISDRVRSHQRIIDLNAS 476

Query: 447 MEIEVMQ-----------LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
           +E +V +             +IL      I   +  G +   N A  KL GY   +++ +
Sbjct: 477 LEHQVAERTSELVKFSVLQRAILAHAGYAIIATDSGGFVTLFNPAAEKLLGYSAAEVIGR 536

Query: 496 P-FTVFLEQNTPSVMNHYLTEILSLDLRQTLEK-------------ITLGSTKEEKLLSL 541
              + F+E        H L E     +  TLE                   + + + L +
Sbjct: 537 RKASQFVEPEELQERAHMLAEQTGTPVAHTLEAIAALTSLGRSDTSEWTYVSHDGRRLPV 596

Query: 542 RIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
            + +  L         Y     D++E K  + +L  A   A+  +  KSDFLA +SHEIR
Sbjct: 597 LLTLSTLRDDHDQVIGYLGVAVDLTEQKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIR 656

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TP+ AI+G   +++             +    IDRS   +L+I+ND+LD SKIE+G+++L
Sbjct: 657 TPMNAILGMLYLLQRSELPGAA----QDMVAKIDRSARTLLEIINDILDFSKIEAGRIDL 712

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTS-FANNIPRILADLRSVKQIALNILSNAI 716
              P  L++       L++   + K + +       +   +L D   + Q+ +N++ NAI
Sbjct: 713 ECAPFDLNQLFDNIADLMRSSLSAKPVEMIVEPLPRDSRWLLGDALRINQVLVNLVGNAI 772

Query: 717 HFTPSGGQIIISTTHTSNEE-----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
            FT  G ++++S     + +     ++  VRDTG+G++  +      PF Q   S   R 
Sbjct: 773 KFTEQG-EVVLSVRRFPSGDPNKFKLLFSVRDTGIGISKEKQSVIFSPFLQADTSTSRRY 831

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
            G+GLGL +++ +V+   G+  + S P +G+    +  L  +S P 
Sbjct: 832 GGSGLGLTISRRLVELMGGELEVESVPGRGSEFYFVVTLEKSSPPQ 877



 Score = 85.8 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 52/442 (11%), Positives = 126/442 (28%), Gaps = 55/442 (12%)

Query: 169 YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228
               REF G  G+G +H  RV     A   +  +        ++  +  + E+Y +   +
Sbjct: 99  RDYPREFPGVLGYGYIH--RVAPADEAAFLQAARADGAPDIHRRPLAPWDGERYMVLYFE 156

Query: 229 SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288
                 R      +                 P++TS  S    +    +  L      + 
Sbjct: 157 PESSGNRPLGIDIASEPRRRAAALQAARSGAPVMTSPISLSGYRVPNESGFLVLLAVYRE 216

Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSF 348
              LQ   +                                    +VY+  ++     S 
Sbjct: 217 GMPLQTPQQRMLATSG-----------------------------WVYAPFSVEQMVRSA 247

Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
           L      ++D  +          +   + ++A++P ++       +    R   I  +  
Sbjct: 248 LGERDDVALDLSDRNEPTHNFYRSGTPASDSALRPPVVR-----LLPIYGRTWVITAHPT 302

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDV----DTRINKRKMEIEVMQLCSILEATSDG 464
                +             M  + +    +       + + ++  + M+L +++  +S+ 
Sbjct: 303 AGFVASLNQSSPWLIGGLVMAASVLFAALLVLYFSNGLRREEVLRKQMELAALVSHSSEA 362

Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
           I     +G I   N A   +FGY  ++ + +  T  L           +    +      
Sbjct: 363 IVAETPDGRITHWNPAAEAMFGYTADEAIDQDLTTLLSP--QPYAMSEVDHADAALAGNA 420

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEK 580
               T+   ++   + +      +  S            DIS+  +   ++       E 
Sbjct: 421 SAAQTM-RHRDGHQVHVLASKAPIIESEGTLSGHSHFFRDISDRVRSHQRIIDLNASLEH 479

Query: 581 ESSHKSDFL--------ARVSH 594
           + + ++  L        A ++H
Sbjct: 480 QVAERTSELVKFSVLQRAILAH 501



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/283 (9%), Positives = 68/283 (24%), Gaps = 23/283 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMR----------LCDVSDILHIDPNNHIGDLLK 138
            D+ G++   +    K +G  A ++IG R          L + + +L       +   L+
Sbjct: 509 TDSGGFVTLFNPAAEKLLGYSAAEVIGRRKASQFVEPEELQERAHMLAEQTGTPVAHTLE 568

Query: 139 RQNTW----YGKTTLW-PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193
                       T+ W  +      +P+ L    +   + +  G+ G  +          
Sbjct: 569 AIAALTSLGRSDTSEWTYVSHDGRRLPVLLTLSTLRDDHDQVIGYLGVAV--DLTEQKLH 626

Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253
               +         ++ K    +    +              ++                
Sbjct: 627 EKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSELPGAAQDMVAKID 686

Query: 254 LKTEKYPLLTSEESSLPEQEDFH------TINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
                   + ++     + E           +LNQ           + S +  E +    
Sbjct: 687 RSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQLFDNIADLMRSSLSAKPVEMIVEPL 746

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLL 350
                    +   +    V+           G +  +   F  
Sbjct: 747 PRDSRWLLGDALRINQVLVNLVGNAIKFTEQGEVVLSVRRFPS 789



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/375 (8%), Positives = 81/375 (21%), Gaps = 12/375 (3%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150
             G +   +       G  A + I   L  +        +                 T+ 
Sbjct: 368 PDGRITHWNPAAEAMFGYTADEAIDQDLTTLLSPQPYAMSEVDHADAALAGNASAAQTMR 427

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
             +G  ++  +  +  PI       SG   F                  L+    H  ++
Sbjct: 428 HRDGHQVH--VLASKAPIIESEGTLSGHSHF--FRDISDRVRSHQRIIDLNASLEH--QV 481

Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270
            +  S + K      +  +   +  +          +    + L       +     +  
Sbjct: 482 AERTSELVKFSVLQRAILAHAGYAIIATDSGGFVTLFNPAAEKLLGYSAAEVIGRRKASQ 541

Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330
             E            +Q    + +  +      S     +    +   +      +    
Sbjct: 542 FVEPEELQERAHMLAEQTGTPVAHTLEAIAALTSLGRSDTSEWTYVSHDGRRLPVLLTLS 601

Query: 331 IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390
                  H  +       + LT+ K  +        +        SD  A     +    
Sbjct: 602 T--LRDDHDQVIGYLGVAVDLTEQKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIRTPM 659

Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450
              +     L   +        +  I           +       +       +  +E  
Sbjct: 660 NAILGMLYLLQRSELPGAAQDMVAKID----RSARTLLEIINDILDFSKIEAGRIDLECA 715

Query: 451 VMQLCSILEATSDGI 465
              L  + +  +D +
Sbjct: 716 PFDLNQLFDNIADLM 730


>gi|220922969|ref|YP_002498271.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans
           ORS 2060]
 gi|219947576|gb|ACL57968.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans
           ORS 2060]
          Length = 969

 Score =  368 bits (944), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 124/667 (18%), Positives = 235/667 (35%), Gaps = 30/667 (4%)

Query: 164 AALPIYSRNREFSG-FRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKY 222
           + LP+  R     G F G  +  +             L ++ S      +G     +   
Sbjct: 160 SVLPLSRRLNNPDGSFAGVVMAALEPDYFAQFYATLGLGERGSIGLWSTEGQLLSRQPAA 219

Query: 223 DIFSQQ---SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTIN 279
            I SQ    S  P  +  ++ SS         D ++         +  +L         +
Sbjct: 220 PIESQSKDYSATPLFQNLHQASSGVYDEPAAVDGVERIVAYERLVKYPALTVSAAIARDD 279

Query: 280 LNQYTKKQYFGTLQNNSKESFEYLSH--------RNHPSLSAYFDEGENLTPETVDKCPI 331
                +++        S  +   +          R   +  A      +L   T++    
Sbjct: 280 ALAPWRREAVIQAGAISTVALALVGLGVGLGRRDRRVRAAEAEARASADLLAVTLENMDQ 339

Query: 332 P-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390
               V +   +   N   L L    +    +     +        ++             
Sbjct: 340 GLMMVDADDRVQVCNRRALELLDLPAAFMAQKPTFTAVRNYQLAQNEFVRSDDAFRAWVA 399

Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450
           R  +      +  +      L +  +P                  +       ++     
Sbjct: 400 RAGLEPKEHTYERERPNGTVLEIRTVPLAGG-------GAVRTYTDITARHGAEQARRES 452

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
             +   + +  SD I + + +G     + AV  + GY VE+  R     +L       + 
Sbjct: 453 EARYRLLADNVSDLIVLGHADGRRSYISPAVHAMLGYTVEEAHRIGMREWLHPEDLGRVF 512

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT--MHDISEWKQEK 568
              T +       ++  +     K    +    + +++  +   ++   + D++E  +++
Sbjct: 513 ATTTSLSPERPTASV--VYRLRHKAGHYVWAEAVFQRVEDAGEVTIITAIRDVTERVRQE 570

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
            +L  AK  AE  +  K++FLA +SHE+RTPLT ++G  +++         +        
Sbjct: 571 RRLEQAKVAAEAGARVKAEFLANMSHELRTPLTGMLGVHDLLAGD---TSLSAAQRHLIG 627

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
               +G  +L IVND+LD SKIE+G+M +   P SL   V     LV   A  K + +  
Sbjct: 628 LAQEAGRSLLAIVNDILDFSKIEAGQMAIERVPFSLRALVESCRELVAESAKGKPLRLVA 687

Query: 689 SFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN-EEVILRVRDTGV 746
               ++P   + D   ++QI LN+ SNA+ FTP G +I +     +    V + V DTG+
Sbjct: 688 EIEGDVPDWYVGDPTRLRQILLNLASNAVKFTPQG-EIALRVRSAAGTGRVRVEVTDTGI 746

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+   +L    + F Q   S   +  GTGLGL + K +V+   G   + S P +G+    
Sbjct: 747 GIPADKLPLLFERFSQADTSTTRQYGGTGLGLVICKRLVELMGGAIGVESIPGQGSTFWF 806

Query: 807 IFPLYDT 813
             PL   
Sbjct: 807 ELPLASA 813



 Score = 46.9 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 25/234 (10%), Positives = 63/234 (26%), Gaps = 10/234 (4%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150
           A G    IS  +   +G    +   + + +      +         L  +          
Sbjct: 472 ADGRRSYISPAVHAMLGYTVEEAHRIGMREWLHPEDLGRVFATTTSLSPERPTASVVYRL 531

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
             +  +  V  +     +     E +      I+   R   +     +RL++  + +   
Sbjct: 532 RHKAGHY-VWAEAVFQRVED-AGEVT------IITAIRDVTERVRQERRLEQ--AKVAAE 581

Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270
                  E         ++P   +   + + +     +     L         S  + + 
Sbjct: 582 AGARVKAEFLANMSHELRTPLTGMLGVHDLLAGDTSLSAAQRHLIGLAQEAGRSLLAIVN 641

Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
           +  DF  I   Q   ++   +L+   +   E ++            E E   P+
Sbjct: 642 DILDFSKIEAGQMAIERVPFSLRALVESCRELVAESAKGKPLRLVAEIEGDVPD 695



 Score = 43.9 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 16/243 (6%), Positives = 52/243 (21%), Gaps = 11/243 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +DA   ++  +    + +   A   +  +    +   +    N           W  +  
Sbjct: 344 VDADDRVQVCNRRALELLDLPAA-FMAQKPTFTAVRNYQLAQNEFVRSDDAFRAWVARAG 402

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           L P E T      +   L I +     +G             +      +  + ++  L 
Sbjct: 403 LEPKEHTYERERPNGTVLEIRTVP--LAGGGAVRTYTDITARHGAEQARRESEARYRLLA 460

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPH-----LRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
           +       +                     +   +++      +      +      L  
Sbjct: 461 DNVSDLIVLGHADGRRSYISPAVHAMLGYTVEEAHRIGMREWLHPEDLGRVFATTTSLSP 520

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQN--NSKESFEYLSHRNHPSLSAYFDEGENL 321
            E  +            +    +  F  +++                       ++ +  
Sbjct: 521 -ERPTASVVYRLRHKAGHYVWAEAVFQRVEDAGEVTIITAIRDVTERVRQERRLEQAKVA 579

Query: 322 TPE 324
              
Sbjct: 580 AEA 582


>gi|183220935|ref|YP_001838931.1| putative signal transduction histidine kinase [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
 gi|189911031|ref|YP_001962586.1| two component response regulator sensor histidine kinase/response
           regulator subunits [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167775707|gb|ABZ94008.1| Sensor histidine kinase and response regulator of a two component
           complex [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|167779357|gb|ABZ97655.1| Putative signal transduction histidine kinase; putative membrane
           protein [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Paris)']
          Length = 1206

 Score =  368 bits (944), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 104/509 (20%), Positives = 212/509 (41%), Gaps = 27/509 (5%)

Query: 315 FDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
             + E+     ++        + + G +   N +   +  + + + I     +  L+ +P
Sbjct: 320 LQKSESRLRAIIETAADAIVMIDTRGIIQEFNVTAERMFGWTAKEIIGKNVKI--LMPSP 377

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
              +++      L   +   I        ++ +                + P+N    G+
Sbjct: 378 FREEHDGYLSNYLTTGEAKIIGIGRETIALRKDGTTF---PIRLAIGHTKLPQNDIFVGL 434

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIA---IINREGIILSTNRAVSKLFGYPVE 490
             +  +  + +  ++    QL S ++    G+    +I+     +  + A+ ++ GYP +
Sbjct: 435 ISDISERILIEHALKDNEEQLRSFIQNIP-GVVYRCLIDEYWSSVFLSDAIFQISGYPSK 493

Query: 491 DILR----KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
           D L     + F+  +  +    +++ +   +       L    +   K  ++  +     
Sbjct: 494 DFLEPNRIRNFSDIIHPDDREHVSNIIQNAIDTSDTFVLNYRIV--HKNGEIRWVLEYGG 551

Query: 547 KLPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
            +   +         + D ++ +  +  L  +K+ AE  S  KS FLA +SHEIRTP+ A
Sbjct: 552 PVYDENNEVKFLDGVILDNTDRRMIEEALIESKEKAEMASITKSTFLANMSHEIRTPMNA 611

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           IIGF+EV+ +         +  ++   I  S   +L ++ND+L+ +K++ G + L     
Sbjct: 612 IIGFTEVLLSDP----NPNQNKKHLETIRNSAKSLLRLLNDVLNSAKLDRGALELESVDF 667

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPS 721
           SL   V +  S   + A  K +   T ++N +      D   ++QI  N++ NAI FT  
Sbjct: 668 SLISLVDQVSSTFIMEAKRKGLEFLTHYSNELEDYYRGDSLRIRQILTNLIGNAIKFTKQ 727

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           G +I +  T     +V+  ++DTG+G+    +EK  +PF Q   S   +  GTGLG  ++
Sbjct: 728 G-KIELFITP-HKGQVLFHIQDTGIGIAEDRMEKIFEPFTQADVSMSRKFGGTGLGTTIS 785

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           K +V+   GK ++ S    GT      PL
Sbjct: 786 KQLVELMGGKIWLESKLGVGTNFYFSLPL 814


>gi|153869805|ref|ZP_01999330.1| sensor histidine kinase FexB [Beggiatoa sp. PS]
 gi|152073733|gb|EDN70674.1| sensor histidine kinase FexB [Beggiatoa sp. PS]
          Length = 681

 Score =  368 bits (944), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 106/577 (18%), Positives = 230/577 (39%), Gaps = 43/577 (7%)

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
                   +     +N     ++     +++      E+ S     +     ++    + 
Sbjct: 13  PNIEQQSHEHQVFDVNGKIAWQRWTNRAIRDEHGSVVEFQSVGIDITERKLAEKALRKSE 72

Query: 324 ETVDKC----PIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
           E  +          + +       Y +P F  +  +   + +     +        +  +
Sbjct: 73  ERFELAMRGASDGLWDINYETEKAYYSPRFKQMLGFSEHESMTPDDII------HWVHPD 126

Query: 379 NAIKPVMLYRS-DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
           +  K ++  ++     I        ++  + + + +        N+  + +   G   + 
Sbjct: 127 DFDKVLLNSKAYVEKKIPKFQHTFRLRHKKGHYIWVLSRAIAVWNEQGQPLRMVGTNMDL 186

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY--PVEDILRK 495
              +  + K+  +   L  ++++    I   +R    L  N+  +++     P + I + 
Sbjct: 187 TIQKQIEEKLRQQQEFLRLVIDSIPQFIFWKDRNSRYLGCNQNFAQIANVNTPKQIIDKT 246

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-- 553
            F +       +   +    ++  D  +     T+    + +   L      L       
Sbjct: 247 DFDLPWTAEQITYYRNVDRRVMEGDTPEYHIIETI-QLADGQQRWLDTNKIPLHNVQGQV 305

Query: 554 --YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
                +  DI+E KQ + +L  A + AE  +  KS FLA +SHE+RTPL A++G++++ +
Sbjct: 306 IGILGSFEDITERKQAEVQLQKALQTAETANHTKSVFLANMSHELRTPLNAVLGYTQIFQ 365

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
                   N +  E  + I R+G  +L ++ND+LDISK+E+G++  + + + L + +   
Sbjct: 366 QDD---TLNKQQREGIDIIHRNGEYLLTLINDILDISKVEAGQLEFYPKDMKLSQFLQGI 422

Query: 672 ISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
           + L Q+   +K+I       + +P I  AD + ++QI +N+LSNAI FT  G  +  +  
Sbjct: 423 VQLFQMRTQQKKIEFSYKPLSALPEIIHADEKRLRQIFINLLSNAIKFTDKGS-VTFTVK 481

Query: 731 HTSNE-------------------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
               +                    +  ++ DTG+G+ ++EL+K   PF Q   +   + 
Sbjct: 482 TEQAKIKNEPSWVKNTLSTFYSYSRLHFQIEDTGIGIASHELDKIFLPFQQADKNHYNKP 541

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            GTGLGL + K +VD   G  ++ S   KG++  + F
Sbjct: 542 MGTGLGLSITKNLVDMMDGSIHVESLLGKGSIFWVEF 578



 Score = 81.2 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 19/208 (9%), Positives = 60/208 (28%), Gaps = 6/208 (2%)

Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
             SD   I   +  H +           +      ++    +    +  +  + ++ ++ 
Sbjct: 8   ALSDNPNIEQQSHEHQVFDVNGKIAWQRWTNRAIRDEHGSVVEFQSVGIDITERKLAEKA 67

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED-ILRKPFTVFLEQNT 505
           +     +    +   SDG+  IN E      +    ++ G+   + +       ++  + 
Sbjct: 68  LRKSEERFELAMRGASDGLWDINYETEKAYYSPRFKQMLGFSEHESMTPDDIIHWVHPDD 127

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDI 561
              +       +   + +  +       K+   + +      +            T  D+
Sbjct: 128 FDKVLLNSKAYVEKKIPK-FQHTFRLRHKKGHYIWVLSRAIAVWNEQGQPLRMVGTNMDL 186

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFL 589
           +  KQ + KL   ++           F+
Sbjct: 187 TIQKQIEEKLRQQQEFLRLVIDSIPQFI 214



 Score = 54.3 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 30/319 (9%), Positives = 81/319 (25%), Gaps = 30/319 (9%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI-----GDLLKRQ 140
            W+I+        S    + +G    +   M   D+   +H D  + +       + K+ 
Sbjct: 86  LWDINYETEKAYYSPRFKQMLGFSEHES--MTPDDIIHWVHPDDFDKVLLNSKAYVEKKI 143

Query: 141 NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
             +     L   +G   Y+ +   A+ +++   +    R  G      +        ++ 
Sbjct: 144 PKFQHTFRLRHKKGH--YIWVLSRAIAVWNEQGQP--LRMVGTNMDLTIQKQIEEKLRQQ 199

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR---MKNKVSSLTEYYAHKDDVLKT- 256
            +    + +        +               +       ++   T++         T 
Sbjct: 200 QEFLRLVIDSIPQFIFWKDRNSRYLGCNQNFAQIANVNTPKQIIDKTDFDLPWTAEQITY 259

Query: 257 ---EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
                  ++  +       E     +  Q         L N   +    L      +   
Sbjct: 260 YRNVDRRVMEGDTPEYHIIETIQLADGQQRWLDTNKIPLHNVQGQVIGILGSFEDITERK 319

Query: 314 YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
             +       +T +            ++F AN S  L T       +    G + +    
Sbjct: 320 QAEVQLQKALQTAETAN------HTKSVFLANMSHELRTP------LNAVLGYTQIFQQD 367

Query: 374 KLSDNNAIKPVMLYRSDRT 392
              +    + + +   +  
Sbjct: 368 DTLNKQQREGIDIIHRNGE 386



 Score = 42.7 bits (99), Expect = 0.28,   Method: Composition-based stats.
 Identities = 17/181 (9%), Positives = 49/181 (27%), Gaps = 5/181 (2%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFK-MIGMRLCDV-SDILHIDPNNHIGDLLKRQNT 142
           F +  D +      ++   +       K +I     D+      I    ++   +   +T
Sbjct: 213 FIFWKDRNSRYLGCNQNFAQIANVNTPKQIIDKTDFDLPWTAEQITYYRNVDRRVMEGDT 272

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
                             +D   +P+++   +  G  G                 ++  +
Sbjct: 273 PEYHIIETIQLADGQQRWLDTNKIPLHNVQGQVIGILG--SFEDITERKQAEVQLQKALQ 330

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
                +  K    +    +       +   + ++  +  +L +      D++      LL
Sbjct: 331 TAETANHTKSVFLANMSHELRT-PLNAVLGYTQIFQQDDTLNKQQREGIDIIHRNGEYLL 389

Query: 263 T 263
           T
Sbjct: 390 T 390


>gi|117919029|ref|YP_868221.1| multi-sensor hybrid histidine kinase [Shewanella sp. ANA-3]
 gi|117611361|gb|ABK46815.1| multi-sensor hybrid histidine kinase [Shewanella sp. ANA-3]
          Length = 1236

 Score =  368 bits (944), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 123/594 (20%), Positives = 205/594 (34%), Gaps = 46/594 (7%)

Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291
           P  R+ + +   ++      + +     P          E + +           +    
Sbjct: 381 PASRLLSHLEGCSQEPRKPPEKITPGWEPWFLLVSRIFEENKQYTH------HLAEQNKR 434

Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLL 350
           L        E L          Y      L    +D  P    F    GN    N +   
Sbjct: 435 LDKLVARRTERLKDATERREREYA-----LLRSLLDSIPEAIVFKDKEGNYLGCNKAAER 489

Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
           +  Y   + I ++     L          A    +L             L          
Sbjct: 490 MLGYTESEMIGLSS--EDLTSPEMGIRIRAEDEQILKDRTPLRYQEKVELA------GKP 541

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA--II 468
           + +  +     N+  E      +  +      +  ++ +   +    ++A  DG+    +
Sbjct: 542 VLLDTLKLPFYNRRGELQGLIAVWRDVTREYESAEQLRLSEERYHLAMDAVEDGLWDWYL 601

Query: 469 NREGIILSTNRAVSKLFGYPVED--ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
           + E II   N +   + GY   +   L          +    +  Y  + L   +    E
Sbjct: 602 DSEHII--CNPSYYSMLGYKPNEFPALVSAIDQLTHPDDRIRVEEYRNQYLENPVDA-YE 658

Query: 527 KITLGSTKEEKLLSLR-----IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE 581
                  K      +      +             T  DI+  K  +  L  AK+ AE  
Sbjct: 659 IEFRILGKNGSYHWVLSRGRVVEFTADGQPKRMVGTHKDITRHKSNEVALLEAKQDAELA 718

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
           + +KS+FLA +SHEIRTP+ AIIG  ++ +          +  +Y      S   +L I+
Sbjct: 719 NLYKSEFLANMSHEIRTPMNAIIGMLQLAQRTSLTA----QQKDYLEKAGFSAQSLLRII 774

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-AD 700
           ND+LD SKIE+GK+ L   P  LD+ +  A+ L  L A E+ + +          IL  D
Sbjct: 775 NDILDFSKIEAGKLELERVPFPLDKVLDHALDLNALKAQEQGVELLLYAPVTAGLILKGD 834

Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE------VILRVRDTGVGMTNYELE 754
              + Q+ +N+LSNA+ FT SG    I        E      +   VRDTG+G++  + E
Sbjct: 835 PLRLGQVLINLLSNAVKFTQSG---EIELGCEDVGERDHRITLKFWVRDTGIGISKDQQE 891

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           K    F Q   S   +  GTGLGL ++K +V    GK  + S    G+      
Sbjct: 892 KLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGKMQVQSELGVGSTFSFTI 945



 Score = 55.0 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 48/347 (13%), Positives = 101/347 (29%), Gaps = 30/347 (8%)

Query: 9   NPEDILTSNCKGNTQDLSK--KKIDNGFE-----TEKSKKENPCHDSFEQSNFTDQNQES 61
           +P   L S+ +G +Q+  K  +KI  G+E       +  +EN  +           ++  
Sbjct: 380 SPASRLLSHLEGCSQEPRKPPEKITPGWEPWFLLVSRIFEENKQYTHHLAEQNKRLDKLV 439

Query: 62  VSNTNYLDSENTFVFDP--------IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM 113
              T  L                          +  D  G     ++   + +G    +M
Sbjct: 440 ARRTERLKDATERREREYALLRSLLDSIPEAIVFK-DKEGNYLGCNKAAERMLGYTESEM 498

Query: 114 IGMRLCDVSDIL-HIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172
           IG+   D++     I        +LK +     +     +E     V +D   LP Y+R 
Sbjct: 499 IGLSSEDLTSPEMGIRIRAEDEQILKDRTPLRYQE---KVELAGKPVLLDTLKLPFYNRR 555

Query: 173 REFSGFRGFGIVHVN-RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231
            E  G     +     R       L    ++    +  ++ G      +   I    S  
Sbjct: 556 GELQGL--IAVWRDVTREYESAEQLRLSEERYHLAMDAVEDGLWDWYLDSEHIICNPSYY 613

Query: 232 PHLRMKNK----VSSLTEYYAHKDDVLKTEKYPL--LTSEESSLPEQEDFHTINLNQYTK 285
             L  K      + S  +   H DD ++ E+Y    L +   +   +      N + +  
Sbjct: 614 SMLGYKPNEFPALVSAIDQLTHPDDRIRVEEYRNQYLENPVDAYEIEFRILGKNGSYHWV 673

Query: 286 KQYFGTLQ-NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI 331
                 ++     +    +      +     +       +  +   +
Sbjct: 674 LSRGRVVEFTADGQPKRMVGTHKDITRHKSNEVALLEAKQDAELANL 720


>gi|317052256|ref|YP_004113372.1| PAS sensor protein [Desulfurispirillum indicum S5]
 gi|316947340|gb|ADU66816.1| PAS sensor protein [Desulfurispirillum indicum S5]
          Length = 1253

 Score =  368 bits (944), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 119/748 (15%), Positives = 238/748 (31%), Gaps = 85/748 (11%)

Query: 121 VSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIY----------- 169
           ++D       + +  LL  +            EG +    +D +  P+Y           
Sbjct: 79  LADERTAQQGDALATLLDSR------LKQLRAEGFSALHFVDASRQPLYSFRLRSSGPFQ 132

Query: 170 -----SRNREFSGFRGFGIVHVNRVDNDPRA--LGKRLDKKFSHLHEIKKGHSSVEKEKY 222
                    E     G  ++     D    A  L   L+     +    +G  +      
Sbjct: 133 VMVGDDSAGEVRAVPGALLIFFGARDASAPAIMLELPLESVSRGMESFYRGSFAFTPPLA 192

Query: 223 DIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQ 282
           ++           +  + S++T     +D +   E+       +        F       
Sbjct: 193 EVHEVSETALCQTLPPEASAITGKRKMRDFLRSIERQ---MGNQRPFATSVRFGQKRYTY 249

Query: 283 YTKKQYFGTLQN-------------------------NSKESFEYLSHRNHPSLSAYFDE 317
                +     +                                 L++ +         +
Sbjct: 250 TFLPVHLAQSPDFLFHYEDDVYVMEYYHNYYLLVFLFTLIAFTVVLANFSRVRSLYTLRQ 309

Query: 318 GENLTPE-------TVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
             +           T D        +     + Y N +  LL      + +         
Sbjct: 310 QRDELARVGGLLKGTTDSMVEGLLMIDGSRRITYCNRAATLLLHATEQELLGRTP--DAF 367

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
                       +   +  +       +     +  +      +++I     +    +  
Sbjct: 368 FFHASSPWEVPQEIFCVADAVSDESMGTECEALVISDGGQRRYVSYITTPLQDGAGISGG 427

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
              +  +    + +    +  +  L      T   I I N  GII   N+A     GY  
Sbjct: 428 HVMVFRDISQQKDD----QERIRLLTEAFVQTDSMILITNHRGIIEYANQAFFAQTGYDR 483

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
           E+++ K       +     +   +  ++S       E       K  +     + +  + 
Sbjct: 484 EEVIGKS-----PRFPSPSVESEIWSVISAGQTWRGEME--SRKKNGESYWTSMSVTPIK 536

Query: 550 FSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
            +      Y     D++E K  ++ L  AK +AE+ S  KS FLA +SHEIRTP+  I+G
Sbjct: 537 DTHGHVTHYVTVEEDMTERKAMEDALREAKNVAEEASRAKSIFLANMSHEIRTPMNGILG 596

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
            +E+                Y      S   +L I+ND+LD SK+E+G++ L        
Sbjct: 597 MTELALQTELSTT----QRRYLTIAHNSAKSLLVIINDVLDFSKVEAGEIRLEQTSFDPV 652

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQ 724
           E V   +  +   A  K I +     + +   ++ D   ++QI  N+L NA+ FT +G  
Sbjct: 653 ETVENVMQSIAYSAYSKGIELMNHIDHRLSHYLVGDPTRLQQILNNLLGNAVKFTDTGHV 712

Query: 725 ---IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
              + +     S   +  RV DTG+G+   +++   + F Q+  S + +  GTGLGL + 
Sbjct: 713 LLDVEVQGESDSEAHLHFRVIDTGIGIPANKIDSIFESFSQVEASDRRKFGGTGLGLAIT 772

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           + +V    G+ ++ S   +G+    + P
Sbjct: 773 RKLVHLMNGRIWVESHMGEGSTFHFVIP 800



 Score = 62.7 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 48/483 (9%), Positives = 115/483 (23%), Gaps = 57/483 (11%)

Query: 93  GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPI 152
           G ++  ++      G    ++IG               + I  ++    TW G+      
Sbjct: 466 GIIEYANQAFFAQTGYDREEVIGKSPR----FPSPSVESEIWSVISAGQTWRGEMESRKK 521

Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212
            G +      ++  PI   +   + +    +              +            K 
Sbjct: 522 NGESY--WTSMSVTPIKDTHGHVTHY--VTVEEDMTERKAMEDALREAKNVAEEASRAKS 577

Query: 213 GHSSVEKEKYD-----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
              +    +       I           +            +    L      +L   + 
Sbjct: 578 IFLANMSHEIRTPMNGILGMTELALQTELSTTQRRYLTIAHNSAKSLLVIINDVLDFSKV 637

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
              E     T      T +    ++  ++      L +     LS Y         + ++
Sbjct: 638 EAGEIRLEQTSFDPVETVENVMQSIAYSAYSKGIELMNHIDHRLSHYLVGDPTRLQQILN 697

Query: 328 K-CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEI-----------AGGLSTLL----- 370
                       G++       + +      +               A  + ++      
Sbjct: 698 NLLGNAVKFTDTGHVLL----DVEVQGESDSEAHLHFRVIDTGIGIPANKIDSIFESFSQ 753

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
                        + L  + +     + R+       E S     IPF K ++ P+    
Sbjct: 754 VEASDRRKFGGTGLGLAITRKLVHLMNGRIWVESHMGEGSTFHFVIPFRKGDRLPDIPFD 813

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA-IINREGIILSTNRAVSKLFGYPV 489
              E       +     EI    L  ILE    G+   I+ +           +     +
Sbjct: 814 ISAEQAARTRILVADDSEINRRILVEILERRQLGVVEAIDGDD--------ARQKLQQAM 865

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
           ++   +PF + +           L   +       L +      K  + L + ++   + 
Sbjct: 866 DE--GRPFDMLI-----------LDHFMPGIRGVDLAREL-HQHKGHRNLPILLLPSSMD 911

Query: 550 FSS 552
              
Sbjct: 912 SDD 914



 Score = 48.1 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/271 (8%), Positives = 69/271 (25%), Gaps = 19/271 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID    +   +      +     +++G    D        P     ++    +    ++ 
Sbjct: 335 IDGSRRITYCNRAATLLLHATEQELLGRTP-DAFFFHASSPWEVPQEIFCVADAVSDESM 393

Query: 149 -----LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                   I        +     P+        G     +        D +   + L + 
Sbjct: 394 GTECEALVISDGGQRRYVSYITTPLQDGAGISGGH--VMVFRDISQQKDDQERIRLLTEA 451

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
           F            +   +  I             ++   + +        +++E + +++
Sbjct: 452 FVQT----DSMILITNHRGIIEYANQAFFAQTGYDREEVIGKSPRFPSPSVESEIWSVIS 507

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
           + ++   E E     N   Y        +++       Y++     +     ++      
Sbjct: 508 AGQTWRGEME-SRKKNGESYWTSMSVTPIKDTHGHVTHYVTVEEDMTERKAMEDALREAK 566

Query: 324 ETVDKCPIPFFVYSHGNLFYANPSFLLLTKY 354
              ++           ++F AN S  + T  
Sbjct: 567 NVAEEAS------RAKSIFLANMSHEIRTPM 591


>gi|239828009|ref|YP_002950633.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus
           sp. WCH70]
 gi|239808302|gb|ACS25367.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus
           sp. WCH70]
          Length = 585

 Score =  367 bits (943), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 99/368 (26%), Positives = 177/368 (48%), Gaps = 26/368 (7%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           +  E+E  +L +++E    G+ +I+  G I   NRA  + F     D L +P+T      
Sbjct: 235 KAREMETDRLHTLIENVGIGLILIDSRGYINLINRAFKESFHIHPVDYLYRPYTEAFAHK 294

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDIS 562
               + + +  +    +R+ L    L    + K   +                L  HDI+
Sbjct: 295 EIVQLVNEIF-MKETKIRKQL---LLTIGIDRKHFEVYGAPIIGTNDEWKGIVLVFHDIT 350

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E K+ +                + DF+A VSHE++TP+T+I GF+E + +   G + + +
Sbjct: 351 ELKKLE--------------QMRKDFVANVSHELKTPITSIKGFAETLLD---GAMKDEQ 393

Query: 623 YIEY-ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
            +EY  + I +    +  +V DLLD+SKIE     LH E V L + + E   + Q  + E
Sbjct: 394 TLEYFLSIIWKESERLQTLVQDLLDLSKIEQQGFRLHLETVDLADLLREIAVMFQQKSEE 453

Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
           K I        ++  +  D   +KQI +N+++NA+ +TP GG++ +       +E+++ V
Sbjct: 454 KGIDFYLHAPKSV-YMEGDANRIKQIFINLITNALTYTPKGGKVELMIE-EKEKEILVHV 511

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
           +DTG+G+   E+ +  + F ++  ++     GTGLGL + K +V+A+ G   + ST  KG
Sbjct: 512 KDTGIGIDEQEIPRIFERFYRVDKARGRNSGGTGLGLAIVKHLVEAHHGHITVKSTVGKG 571

Query: 802 TLIEIIFP 809
           T   + FP
Sbjct: 572 TTFTVHFP 579


>gi|17229920|ref|NP_486468.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17131520|dbj|BAB74127.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 1627

 Score =  367 bits (943), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 114/677 (16%), Positives = 237/677 (35%), Gaps = 70/677 (10%)

Query: 186  VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF-SQQSPPPHLRMKNKVSSLT 244
                   P A     +     L+         +        + ++      + +    + 
Sbjct: 695  DAEKSIHPVAQAGYEEGYLQSLNLTWADTVRGQGPTGTAIRTGKTAIIQNILTDPRFEIW 754

Query: 245  EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
               A+      +   PL+ + ++           N     + +    L  +       L 
Sbjct: 755  RCQANNRGYASSISLPLMNNGQAFGALNIYAAEANAFDSDEVKLLEELTADVAYGIVALR 814

Query: 305  -HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEI 362
              R+     A   E +     T++   +  + ++   N    +     L   +S      
Sbjct: 815  NRRDRQIAEAALRESQERLSLTLEAVNLGIWDWNITTNQIIWSEGHARLFGIES----GK 870

Query: 363  AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
              G      A    ++      ++  + +     S     I  +  N   +        N
Sbjct: 871  FDGTYEAFQACIYPEDRGGLAEVINSARQQKTDYSHEFRIISPDG-NIHWIEGTGKLYYN 929

Query: 423  QFPENMPQNGIEPEDV---------------------------------------DTRIN 443
            +  E +   GI  +                                         + +  
Sbjct: 930  EMGEAVRMLGIVRDITSRKQIEATLQKINNELELRVAERTAELVNVNRQLQSELDERQRI 989

Query: 444  KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            +  + I  ++L  IL+   D I  IN    I   N+   K+FGY  E+I+ +     + Q
Sbjct: 990  EEALRISQVRLARILDIADDAIISINGNQQITLFNQGAEKIFGYSAEEIIGQRLDTLIPQ 1049

Query: 504  NTPSVMNHYLT---EILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCYSLTM 558
                    ++    +  SL  R    +   G  ++         I   +L     Y++ +
Sbjct: 1050 RFTQTHRQHVADFGQAPSLARRMGERREIFGCRQDGTEFPAEASISKFQLDKEVFYTVIL 1109

Query: 559  HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
             D++E KQ +                K +F++ VSHE+RTPLT+I G   ++ +      
Sbjct: 1110 RDVTERKQIE--------------RMKDEFVSVVSHELRTPLTSIHGSLGMLASGLLSA- 1154

Query: 619  GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
             + +          S   ++ ++ND+LDI +IESG++ +  E   L + +  A+S++Q  
Sbjct: 1155 DSEQGKRLLEIATDSTERLVRLINDILDIERIESGRVKMERESCDLSDLIESAVSIMQPL 1214

Query: 679  ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738
            AN+  + +  S  +   ++  D   + Q   N+LSNAI F+ +   + +       +E++
Sbjct: 1215 ANKAGVKLSVSSPS--IQLWVDPDRIVQTLTNLLSNAIKFSTAEKTVWL-VAQHYGDELL 1271

Query: 739  LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
            L V+D G G+   +L+   + F Q+ +S     +GTGLGL + ++++  + G+ +  S  
Sbjct: 1272 LTVKDNGRGIPADKLDSIFERFQQVDSSDSRNHDGTGLGLAICQSIIQQHGGRIWAESVL 1331

Query: 799  AKGTLIEIIFPLYDTSH 815
             +G+      P+   S 
Sbjct: 1332 GEGSNFYFTLPILPISQ 1348



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/359 (12%), Positives = 105/359 (29%), Gaps = 26/359 (7%)

Query: 241 SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF 300
            SL  +   +   L  +   LL S +   P +       +    ++      Q  S E+ 
Sbjct: 306 GSLGTFGLPEGSKLARKIEQLLKSGKRLTPTEIQSLQNWVKLLRQEVAAHEPQAASPETT 365

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDI 360
                +  P  +       +  P+ +         +    +   +P     T      D+
Sbjct: 366 SAAILQPQPPQAEAKVLAVDDDPQILAILQTLLHPWGLQVITLDDPRQFWETLRDVNPDL 425

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
                   L+   ++   N I+   + R+D           T+  + E    +  +  + 
Sbjct: 426 --------LILDVEMPYTNGIELCQVVRNDPQWSELPILFLTVHKDGEIVNQVFSVGADD 477

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVM--------------QLCSILEATSDGIA 466
               P   P+      +   R+   +   E                   +I  A  + + 
Sbjct: 478 FVSKPIVGPELVTRIINRLERVKLLRRVSESRGVGEKISPPSPSFTDWRTIFNAEPECVM 537

Query: 467 IINREGIILSTNRAV-SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
           I+  +G +L  N A  + +    V  ++ K     +           L E +    + TL
Sbjct: 538 IVATDGTLLDINPAGVAAIEADSVGAVIGKRVYSLVVPECQQAFRQ-LNESVCQGKQGTL 596

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSCYS--LTMHDISEWKQEKNKLSHAKKIAEKES 582
           E   +      + ++   +  +              D++++KQ + ++    +  +  S
Sbjct: 597 EFEIITCRGNRRWMATHAVPVRNEKDGNLVQLSITRDVTQYKQAELEIKRINRTLQTLS 655


>gi|119493873|ref|ZP_01624438.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
 gi|119452385|gb|EAW33576.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
          Length = 1373

 Score =  367 bits (943), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 106/397 (26%), Positives = 177/397 (44%), Gaps = 24/397 (6%)

Query: 429  PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
                I P  ++  I ++ ++    +L  ILE   D I  ++    IL  N    K+FGY 
Sbjct: 739  RVGEIIPIGLERDIAEQGLKESQERLQGILENAEDAIISVDENQNILLFNHGAEKIFGYS 798

Query: 489  VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT----LEKITLGSTKEEKLLSLRII 544
              + + +     L  N  +V + Y+++   L+ +        +   G  K  +       
Sbjct: 799  PAEAIGQSLENLLPMNARNVHHQYVSDFSHLECQSRKMGERSREVCGRRKTGEEFPAEAS 858

Query: 545  IKKLPFSSCYS--LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
            I KL     +     + DI++ KQ +  L  AK  AE  +  KS+FLA +SHE+RTPL A
Sbjct: 859  ISKLKMRDGWIFTAILKDITKRKQAEMVLEQAKDAAEAANRAKSEFLANMSHELRTPLNA 918

Query: 603  IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
            I+GFS+++      P          N I+ SG  +L ++N +LD+SKIE+G+M L+    
Sbjct: 919  ILGFSQLMNRD---PSLTSEQQNSLNIINSSGEHLLTLINSILDLSKIEAGRMILNENSF 975

Query: 663  SLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPS 721
             L   +     ++ L    K + +      N+P+ I  D   ++Q+ +N+L NAI +T  
Sbjct: 976  DLHHLLDTLEKMLHLKVETKGLSLLFERDENVPQFIKTDEGKLRQVLINLLGNAIKYTDK 1035

Query: 722  GGQIIISTTHTSNEE----------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
            GG   +S                  ++  V DTG G+++ E+      F Q    ++ + 
Sbjct: 1036 GG---VSLKVKQQSYPLEKSPETVNLVFEVTDTGTGISSEEISTIFDAFVQTTTGRKSQ- 1091

Query: 772  EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            +GTGLGLP+++  V    G     S    GT  E   
Sbjct: 1092 QGTGLGLPISRKFVQMMGGDIRAKSELGTGTSFEFNL 1128



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 55/473 (11%), Positives = 120/473 (25%), Gaps = 38/473 (8%)

Query: 121 VSDILHIDPNNHIG--DLLKRQ-NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSG 177
           +  +   DP         ++    TW          G         AA P Y R+    G
Sbjct: 162 LKPLDDFDPRTRPWYSAAVQGGQATWS--PIYLFNRGEFGIT----AAQPFYDRSGNLQG 215

Query: 178 FRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK 237
                +V     D   R       + F      +   SS  +  Y I         +R  
Sbjct: 216 VMAVDLVLTVLSDFLRRLKLTPSGEIFILERSGQLVASSTNEPLYQINPNNDQEFRIRGV 275

Query: 238 NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297
              + LT+               +   ++         H + ++ Y+       L     
Sbjct: 276 KSQNPLTQATIKHLIESVGSLPEIKQVQQLDFKVNGKSHFLEVSPYSDGYGLDWLIVVVV 335

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSV 357
              +++   N    +        L            ++               + +    
Sbjct: 336 PEADFMGQINANRRTTIILCLGALALAIGLGLLTSRWIAR------------QILQLARA 383

Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
                 G L   + A ++S+   +       + +   A                 +    
Sbjct: 384 SQAIAFGQLDQTVHAARVSELEVLAESFNQMARQLKTAF----------------VELEI 427

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG-IAIINREGIILS 476
             +            +  E  + +  +R + +   +      +  +  I     +G IL 
Sbjct: 428 RVEERTSQLKDVNQLLREEIWERKQIERALRLSENKFSKAFHSNPNPSILTRLSDGHILE 487

Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
            N +    F Y   ++  K              +     +    + ++ E      + + 
Sbjct: 488 FNESALSFFEYKSTEVDNKNSLELNIWANSEDRDRVFDLLDKQGIVRSFECDFRTKSGKI 547

Query: 537 KLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
           ++      +  L   +C    +HDI+E KQ +  L +   I    S     F+
Sbjct: 548 RIGLYSAELIDLNGQTCVLSILHDITERKQNELTLQNRALIDHSISRIFQQFV 600



 Score = 42.3 bits (98), Expect = 0.31,   Method: Composition-based stats.
 Identities = 14/172 (8%), Positives = 37/172 (21%), Gaps = 4/172 (2%)

Query: 282 QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGN 340
           +  K+     ++   +                   E +      ++        V  + N
Sbjct: 724 RSVKEWTPEEIKLIQRVGEIIPIGLERDIAEQGLKESQERLQGILENAEDAIISVDENQN 783

Query: 341 LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400
           +   N     +  Y   + I     L  LL      + +          +        R 
Sbjct: 784 ILLFNHGAEKIFGYSPAEAIGQ--SLENLL-PMNARNVHHQYVSDFSHLECQSRKMGERS 840

Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
             +   R+              +  +      I  +    +  +  +E    
Sbjct: 841 REVCGRRKTGEEFPAEASISKLKMRDGWIFTAILKDITKRKQAEMVLEQAKD 892



 Score = 40.4 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/182 (10%), Positives = 53/182 (29%), Gaps = 14/182 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS-------DILHIDPNNHIGDLLKRQN 141
           +D +  +   +    K  G    + IG  L ++           ++   +H+    ++  
Sbjct: 778 VDENQNILLFNHGAEKIFGYSPAEAIGQSLENLLPMNARNVHHQYVSDFSHLECQSRKMG 837

Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
               +       G        ++ L +        G+    I+           + ++  
Sbjct: 838 ERSREVCGRRKTGEEFPAEASISKLKMRD------GWIFTAILKDITKRKQAEMVLEQAK 891

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
                 +  K    +    +       +     ++ N+  SLT    +  +++ +    L
Sbjct: 892 DAAEAANRAKSEFLANMSHELRT-PLNAILGFSQLMNRDPSLTSEQQNSLNIINSSGEHL 950

Query: 262 LT 263
           LT
Sbjct: 951 LT 952


>gi|152976970|ref|YP_001376487.1| multi-sensor signal transduction histidine kinase [Bacillus cereus
           subsp. cytotoxis NVH 391-98]
 gi|152025722|gb|ABS23492.1| multi-sensor signal transduction histidine kinase [Bacillus
           cytotoxicus NVH 391-98]
          Length = 585

 Score =  367 bits (943), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 94/389 (24%), Positives = 184/389 (47%), Gaps = 28/389 (7%)

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           +           +   + +  +E E    +L +++E    G+ +I+  G I   NR+  +
Sbjct: 216 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYISLVNRSYKE 275

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +F    E+ L + +           +   + EI   ++ +  +++ L    E K   +  
Sbjct: 276 IFHVTDEEYLDRLYYESFHHT---EIIELVEEIFMTEV-KVRKQVLLPLDIERKHFEVYG 331

Query: 544 --IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
             II          L  HDI+E K+ +                + DFLA VSHE++TP+T
Sbjct: 332 APIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPIT 377

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
           +I GFSE + +   G + N ++ E + + I +    + D++ DLLD+SKIE     L+  
Sbjct: 378 SIKGFSETLLD---GAMKNQKFCEHFLHIILKESERMQDLIEDLLDLSKIEQQGFKLNMG 434

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720
            V + + + +   ++   A +K I+++     ++  ++ D   +KQI +N++ NAI +TP
Sbjct: 435 NVDIKDLLEDIKMVLDKKAQDKEIVLQMDAMQHV-SVIGDSSRLKQIFINLVHNAIIYTP 493

Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
            GG + +S      +   ++V DTG+G++  E+ +  + F ++  ++     GTGLGL +
Sbjct: 494 VGGTVSVSL-FEDEQNAYVQVADTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSI 552

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            K +V+A+ G   + S   +GT+  +  P
Sbjct: 553 VKHLVEAHHGMITVESKVGEGTMFTVALP 581


>gi|113968921|ref|YP_732714.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-4]
 gi|113883605|gb|ABI37657.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-4]
          Length = 1236

 Score =  367 bits (943), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 123/594 (20%), Positives = 205/594 (34%), Gaps = 46/594 (7%)

Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291
           P  R+ + +   ++      + +     P          E + +           +    
Sbjct: 381 PASRLLSHLEGCSQEPRKPPEKITPGWEPWFLLVSRIFEENKQYTH------HLAEQNKR 434

Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLL 350
           L        E L          Y      L    +D  P    F    GN    N +   
Sbjct: 435 LDKLVARRTERLKDATERREREYA-----LLRSLLDSIPEAIVFKDKEGNYLGCNKAAER 489

Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
           +  Y   + I ++     L          A    +L             L          
Sbjct: 490 MLGYTESEMIGLSS--EDLTSPEMGIRIRAEDEQILKDRTPLRYQEKVELA------GKP 541

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA--II 468
           + +  +     N+  E      +  +      +  ++ +   +    ++A  DG+    +
Sbjct: 542 VLLDTLKLPFYNRRGELQGLIAVWRDVTREYESAEQLRLSEERYHLAMDAVEDGLWDWYL 601

Query: 469 NREGIILSTNRAVSKLFGYPVED--ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
           + E II   N +   + GY   +   L          +    +  Y  + L   +    E
Sbjct: 602 DSEHII--CNPSYYSMLGYKPNEFPALVSAIDQLTHPDDRIRVEEYRNQYLQNPVDA-YE 658

Query: 527 KITLGSTKEEKLLSLR-----IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE 581
                  K      +      +             T  DI+  K  +  L  AK+ AE  
Sbjct: 659 IEFRILGKNGSYHWVLSRGRVVEFTADGQPKRMVGTHKDITRHKSNEVALLEAKQDAELA 718

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
           + +KS+FLA +SHEIRTP+ AIIG  ++ +          +  +Y      S   +L I+
Sbjct: 719 NLYKSEFLANMSHEIRTPMNAIIGMLQLAQRTSLTA----QQKDYLEKAGFSAQSLLRII 774

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-AD 700
           ND+LD SKIE+GK+ L   P  LD+ +  A+ L  L A E+ + +          IL  D
Sbjct: 775 NDILDFSKIEAGKLELERVPFPLDKVLDHALDLNALKAQEQGVELLLYAPVTAGLILKGD 834

Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE------VILRVRDTGVGMTNYELE 754
              + Q+ +N+LSNA+ FT SG    I        E      +   VRDTG+G++  + E
Sbjct: 835 PLRLGQVLINLLSNAVKFTQSG---EIELGCEDVGERDHRITLKFWVRDTGIGISKDQQE 891

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           K    F Q   S   +  GTGLGL ++K +V    GK  + S    G+      
Sbjct: 892 KLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGKMQVQSELGVGSTFSFTI 945



 Score = 55.4 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 48/347 (13%), Positives = 101/347 (29%), Gaps = 30/347 (8%)

Query: 9   NPEDILTSNCKGNTQDLSK--KKIDNGFE-----TEKSKKENPCHDSFEQSNFTDQNQES 61
           +P   L S+ +G +Q+  K  +KI  G+E       +  +EN  +           ++  
Sbjct: 380 SPASRLLSHLEGCSQEPRKPPEKITPGWEPWFLLVSRIFEENKQYTHHLAEQNKRLDKLV 439

Query: 62  VSNTNYLDSENTFVFDP--------IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM 113
              T  L                          +  D  G     ++   + +G    +M
Sbjct: 440 ARRTERLKDATERREREYALLRSLLDSIPEAIVFK-DKEGNYLGCNKAAERMLGYTESEM 498

Query: 114 IGMRLCDVSDIL-HIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172
           IG+   D++     I        +LK +     +     +E     V +D   LP Y+R 
Sbjct: 499 IGLSSEDLTSPEMGIRIRAEDEQILKDRTPLRYQE---KVELAGKPVLLDTLKLPFYNRR 555

Query: 173 REFSGFRGFGIVHVN-RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231
            E  G     +     R       L    ++    +  ++ G      +   I    S  
Sbjct: 556 GELQGL--IAVWRDVTREYESAEQLRLSEERYHLAMDAVEDGLWDWYLDSEHIICNPSYY 613

Query: 232 PHLRMKNK----VSSLTEYYAHKDDVLKTEKYPL--LTSEESSLPEQEDFHTINLNQYTK 285
             L  K      + S  +   H DD ++ E+Y    L +   +   +      N + +  
Sbjct: 614 SMLGYKPNEFPALVSAIDQLTHPDDRIRVEEYRNQYLQNPVDAYEIEFRILGKNGSYHWV 673

Query: 286 KQYFGTLQ-NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI 331
                 ++     +    +      +     +       +  +   +
Sbjct: 674 LSRGRVVEFTADGQPKRMVGTHKDITRHKSNEVALLEAKQDAELANL 720


>gi|228910412|ref|ZP_04074227.1| hypothetical protein bthur0013_45590 [Bacillus thuringiensis IBL
           200]
 gi|228849178|gb|EEM94017.1| hypothetical protein bthur0013_45590 [Bacillus thuringiensis IBL
           200]
          Length = 558

 Score =  367 bits (943), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 92/388 (23%), Positives = 179/388 (46%), Gaps = 26/388 (6%)

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           +           +   + +  +E E    +L +++E    G+ +I+  G I   NR+  +
Sbjct: 187 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 246

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542
            F    E+ L + +           +   + EI   +++   + +  LG  ++   +   
Sbjct: 247 TFHVTDEEYLDRLYYESFHHT---EIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 303

Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
            II          L  HDI+E K+ +                + DFLA VSHE++TP+T+
Sbjct: 304 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 349

Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           I GFSE + +   G + N ++ E + + I +    +  ++ DLLD+SKIE     L+   
Sbjct: 350 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGT 406

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           V +   + +   ++   A EK I ++ +       ++ D   +KQI +N+++NAI +TP+
Sbjct: 407 VDMKGLLEDIHMVLDNKAGEKEISLQVNVLKRA-SVIGDPSRLKQIFINLINNAIVYTPA 465

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           GG + +           ++V DTG+G++  E+ +  + F ++  ++     GTGLGL + 
Sbjct: 466 GGVVSVELA-EDKYNAYIKVSDTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIV 524

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           K +V+A+ G   + S   +GT   ++ P
Sbjct: 525 KHLVEAHQGTITVDSEVGEGTTFTVVLP 552


>gi|228923332|ref|ZP_04086620.1| hypothetical protein bthur0011_43110 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228836286|gb|EEM81639.1| hypothetical protein bthur0011_43110 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 545

 Score =  367 bits (943), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 92/388 (23%), Positives = 179/388 (46%), Gaps = 26/388 (6%)

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           +           +   + +  +E E    +L +++E    G+ +I+  G I   NR+  +
Sbjct: 174 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 233

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542
            F    E+ L + +           +   + EI   +++   + +  LG  ++   +   
Sbjct: 234 TFHVTDEEYLDRLYYESFHHT---EIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 290

Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
            II          L  HDI+E K+ +                + DFLA VSHE++TP+T+
Sbjct: 291 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 336

Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           I GFSE + +   G + N ++ E + + I +    +  ++ DLLD+SKIE     L+   
Sbjct: 337 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGT 393

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           V +   + +   ++   A EK I ++ +       ++ D   +KQI +N+++NAI +TP+
Sbjct: 394 VDMKGLLEDIHMVLDNKAGEKEISLQVNVLKRA-SVIGDPSRLKQIFINLINNAIVYTPA 452

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           GG + +           ++V DTG+G++  E+ +  + F ++  ++     GTGLGL + 
Sbjct: 453 GGVVSVELA-EDKYNAYIKVSDTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIV 511

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           K +V+A+ G   + S   +GT   ++ P
Sbjct: 512 KHLVEAHQGTITVDSEVGEGTTFTVVLP 539


>gi|228903105|ref|ZP_04067241.1| hypothetical protein bthur0014_42710 [Bacillus thuringiensis IBL
           4222]
 gi|228967685|ref|ZP_04128705.1| hypothetical protein bthur0004_44770 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228792018|gb|EEM39600.1| hypothetical protein bthur0004_44770 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228856514|gb|EEN01038.1| hypothetical protein bthur0014_42710 [Bacillus thuringiensis IBL
           4222]
          Length = 558

 Score =  367 bits (943), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 92/388 (23%), Positives = 179/388 (46%), Gaps = 26/388 (6%)

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           +           +   + +  +E E    +L +++E    G+ +I+  G I   NR+  +
Sbjct: 187 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 246

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542
            F    E+ L + +           +   + EI   +++   + +  LG  ++   +   
Sbjct: 247 TFHVTDEEYLDRLYYESFHHT---EIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 303

Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
            II          L  HDI+E K+ +                + DFLA VSHE++TP+T+
Sbjct: 304 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 349

Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           I GFSE + +   G + N ++ E + + I +    +  ++ DLLD+SKIE     L+   
Sbjct: 350 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGT 406

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           V +   + +   ++   A EK I ++ +       ++ D   +KQI +N+++NAI +TP+
Sbjct: 407 VDMKGLLEDIHMVLDNKAGEKEISLQVNVLKRA-SVIGDPSRLKQIFINLINNAIVYTPA 465

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           GG + +           ++V DTG+G++  E+ +  + F ++  ++     GTGLGL + 
Sbjct: 466 GGVVSVELA-EDKYNAYIKVSDTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIV 524

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           K +V+A+ G   + S   +GT   ++ P
Sbjct: 525 KHLVEAHQGTITVDSEVGEGTTFTVVLP 552


>gi|229048295|ref|ZP_04193863.1| hypothetical protein bcere0027_42630 [Bacillus cereus AH676]
 gi|228723020|gb|EEL74397.1| hypothetical protein bcere0027_42630 [Bacillus cereus AH676]
          Length = 558

 Score =  367 bits (943), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 92/388 (23%), Positives = 179/388 (46%), Gaps = 26/388 (6%)

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           +           +   + +  +E E    +L +++E    G+ +I+  G I   NR+  +
Sbjct: 187 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 246

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542
            F    E+ L + +           +   + EI   +++   + +  LG  ++   +   
Sbjct: 247 TFHVTDEEYLDRLYYESFHHT---EIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 303

Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
            II          L  HDI+E K+ +                + DFLA VSHE++TP+T+
Sbjct: 304 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 349

Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           I GFSE + +   G + N ++ E + + I +    +  ++ DLLD+SKIE     L+   
Sbjct: 350 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGT 406

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           V +   + +   ++   A EK I ++ +       ++ D   +KQI +N+++NAI +TP+
Sbjct: 407 VDMKGLLEDIHMVLDNKAGEKEISLQVNVLKRA-SVIGDPSRLKQIFINLINNAIVYTPA 465

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           GG + +           ++V DTG+G++  E+ +  + F ++  ++     GTGLGL + 
Sbjct: 466 GGVVSVELA-EDKYNAYIKVSDTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIV 524

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           K +V+A+ G   + S   +GT   ++ P
Sbjct: 525 KHLVEAHQGTITVDSEVGEGTTFTVVLP 552


>gi|228954857|ref|ZP_04116877.1| hypothetical protein bthur0006_42240 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|229072090|ref|ZP_04205299.1| hypothetical protein bcere0025_42560 [Bacillus cereus F65185]
 gi|229081840|ref|ZP_04214332.1| hypothetical protein bcere0023_44680 [Bacillus cereus Rock4-2]
 gi|229112053|ref|ZP_04241596.1| hypothetical protein bcere0018_42960 [Bacillus cereus Rock1-15]
 gi|229129872|ref|ZP_04258838.1| hypothetical protein bcere0015_43120 [Bacillus cereus BDRD-Cer4]
 gi|228653563|gb|EEL09435.1| hypothetical protein bcere0015_43120 [Bacillus cereus BDRD-Cer4]
 gi|228671376|gb|EEL26677.1| hypothetical protein bcere0018_42960 [Bacillus cereus Rock1-15]
 gi|228701428|gb|EEL53922.1| hypothetical protein bcere0023_44680 [Bacillus cereus Rock4-2]
 gi|228711024|gb|EEL62990.1| hypothetical protein bcere0025_42560 [Bacillus cereus F65185]
 gi|228804846|gb|EEM51445.1| hypothetical protein bthur0006_42240 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 558

 Score =  367 bits (943), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 92/388 (23%), Positives = 179/388 (46%), Gaps = 26/388 (6%)

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           +           +   + +  +E E    +L +++E    G+ +I+  G I   NR+  +
Sbjct: 187 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 246

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542
            F    E+ L + +           +   + EI   +++   + +  LG  ++   +   
Sbjct: 247 TFHVTDEEYLDRLYYESFHHT---EIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 303

Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
            II          L  HDI+E K+ +                + DFLA VSHE++TP+T+
Sbjct: 304 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 349

Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           I GFSE + +   G + N ++ E + + I +    +  ++ DLLD+SKIE     L+   
Sbjct: 350 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGT 406

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           V +   + +   ++   A EK I ++ +       ++ D   +KQI +N+++NAI +TP+
Sbjct: 407 VDMKGLLEDIHMVLDNKAGEKEISLQVNVLKRA-SVIGDPSRLKQIFINLINNAIVYTPA 465

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           GG + +           ++V DTG+G++  E+ +  + F ++  ++     GTGLGL + 
Sbjct: 466 GGVVSVELA-EDKYNAYIKVSDTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIV 524

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           K +V+A+ G   + S   +GT   ++ P
Sbjct: 525 KHLVEAHQGTITVDSEVGEGTTFTVVLP 552


>gi|228960857|ref|ZP_04122490.1| hypothetical protein bthur0005_43120 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|229147148|ref|ZP_04275506.1| hypothetical protein bcere0012_42840 [Bacillus cereus BDRD-ST24]
 gi|228636258|gb|EEK92730.1| hypothetical protein bcere0012_42840 [Bacillus cereus BDRD-ST24]
 gi|228798753|gb|EEM45733.1| hypothetical protein bthur0005_43120 [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 545

 Score =  367 bits (943), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 92/388 (23%), Positives = 179/388 (46%), Gaps = 26/388 (6%)

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           +           +   + +  +E E    +L +++E    G+ +I+  G I   NR+  +
Sbjct: 174 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 233

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542
            F    E+ L + +           +   + EI   +++   + +  LG  ++   +   
Sbjct: 234 TFHVTDEEYLDRLYYESFHHT---EIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 290

Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
            II          L  HDI+E K+ +                + DFLA VSHE++TP+T+
Sbjct: 291 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 336

Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           I GFSE + +   G + N ++ E + + I +    +  ++ DLLD+SKIE     L+   
Sbjct: 337 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGT 393

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           V +   + +   ++   A EK I ++ +       ++ D   +KQI +N+++NAI +TP+
Sbjct: 394 VDMKGLLEDIHMVLDNKAGEKEISLQVNVLKRA-SVIGDPSRLKQIFINLINNAIVYTPA 452

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           GG + +           ++V DTG+G++  E+ +  + F ++  ++     GTGLGL + 
Sbjct: 453 GGVVSVELA-EDKYNAYIKVSDTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIV 511

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           K +V+A+ G   + S   +GT   ++ P
Sbjct: 512 KHLVEAHQGTITVDSEVGEGTTFTVVLP 539


>gi|229152783|ref|ZP_04280966.1| hypothetical protein bcere0011_43150 [Bacillus cereus m1550]
 gi|228630603|gb|EEK87249.1| hypothetical protein bcere0011_43150 [Bacillus cereus m1550]
          Length = 558

 Score =  367 bits (943), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 92/388 (23%), Positives = 179/388 (46%), Gaps = 26/388 (6%)

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           +           +   + +  +E E    +L +++E    G+ +I+  G I   NR+  +
Sbjct: 187 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 246

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542
            F    E+ L + +           +   + EI   +++   + +  LG  ++   +   
Sbjct: 247 TFHVTDEEYLDRLYYESFHHT---EIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 303

Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
            II          L  HDI+E K+ +                + DFLA VSHE++TP+T+
Sbjct: 304 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 349

Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           I GFSE + +   G + N ++ E + + I +    +  ++ DLLD+SKIE     L+   
Sbjct: 350 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGT 406

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           V +   + +   ++   A EK I ++ +       ++ D   +KQI +N+++NAI +TP+
Sbjct: 407 VDMKGLLEDIHMVLDNKAGEKEISLQVNVLKRA-SVIGDPSRLKQIFINLINNAIVYTPA 465

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           GG + +           ++V DTG+G++  E+ +  + F ++  ++     GTGLGL + 
Sbjct: 466 GGVVSVELA-EDKYNAYIKVSDTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIV 524

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           K +V+A+ G   + S   +GT   ++ P
Sbjct: 525 KHLVEAHQGTITVDSEVGEGTTFTVVLP 552


>gi|229180907|ref|ZP_04308242.1| hypothetical protein bcere0005_42510 [Bacillus cereus 172560W]
 gi|229192789|ref|ZP_04319747.1| hypothetical protein bcere0002_44400 [Bacillus cereus ATCC 10876]
 gi|228590628|gb|EEK48489.1| hypothetical protein bcere0002_44400 [Bacillus cereus ATCC 10876]
 gi|228602464|gb|EEK59950.1| hypothetical protein bcere0005_42510 [Bacillus cereus 172560W]
          Length = 558

 Score =  367 bits (943), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 92/388 (23%), Positives = 179/388 (46%), Gaps = 26/388 (6%)

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           +           +   + +  +E E    +L +++E    G+ +I+  G I   NR+  +
Sbjct: 187 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 246

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542
            F    E+ L + +           +   + EI   +++   + +  LG  ++   +   
Sbjct: 247 TFHVTDEEYLDRLYYESFHHT---EIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 303

Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
            II          L  HDI+E K+ +                + DFLA VSHE++TP+T+
Sbjct: 304 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 349

Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           I GFSE + +   G + N ++ E + + I +    +  ++ DLLD+SKIE     L+   
Sbjct: 350 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGT 406

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           V +   + +   ++   A EK I ++ +       ++ D   +KQI +N+++NAI +TP+
Sbjct: 407 VDMKGLLEDIHMVLDNKAGEKEISLQVNVLKRA-SVIGDPSRLKQIFINLINNAIVYTPA 465

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           GG + +           ++V DTG+G++  E+ +  + F ++  ++     GTGLGL + 
Sbjct: 466 GGVVSVELA-EDKYNAYIKVSDTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIV 524

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           K +V+A+ G   + S   +GT   ++ P
Sbjct: 525 KHLVEAHQGTITVDSEVGEGTTFTVVLP 552


>gi|218233234|ref|YP_002369384.1| sensory box histidine kinase PhoR [Bacillus cereus B4264]
 gi|218161191|gb|ACK61183.1| sensory box histidine kinase PhoR [Bacillus cereus B4264]
          Length = 587

 Score =  367 bits (943), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 92/388 (23%), Positives = 179/388 (46%), Gaps = 26/388 (6%)

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           +           +   + +  +E E    +L +++E    G+ +I+  G I   NR+  +
Sbjct: 216 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 275

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542
            F    E+ L + +           +   + EI   +++   + +  LG  ++   +   
Sbjct: 276 TFHVTDEEYLDRLYYESFHHT---EIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 332

Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
            II          L  HDI+E K+ +                + DFLA VSHE++TP+T+
Sbjct: 333 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 378

Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           I GFSE + +   G + N ++ E + + I +    +  ++ DLLD+SKIE     L+   
Sbjct: 379 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGT 435

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           V +   + +   ++   A EK I ++ +       ++ D   +KQI +N+++NAI +TP+
Sbjct: 436 VDMKGLLEDIHMVLDNKAGEKEISLQVNVLKRA-SVIGDPSRLKQIFINLINNAIVYTPA 494

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           GG + +           ++V DTG+G++  E+ +  + F ++  ++     GTGLGL + 
Sbjct: 495 GGVVSVELA-EDKYNAYIKVSDTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIV 553

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           K +V+A+ G   + S   +GT   ++ P
Sbjct: 554 KHLVEAHQGTITVDSEVGEGTTFTVVLP 581


>gi|206969804|ref|ZP_03230758.1| sensory box histidine kinase PhoR [Bacillus cereus AH1134]
 gi|206735492|gb|EDZ52660.1| sensory box histidine kinase PhoR [Bacillus cereus AH1134]
          Length = 587

 Score =  367 bits (943), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 92/388 (23%), Positives = 179/388 (46%), Gaps = 26/388 (6%)

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           +           +   + +  +E E    +L +++E    G+ +I+  G I   NR+  +
Sbjct: 216 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 275

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542
            F    E+ L + +           +   + EI   +++   + +  LG  ++   +   
Sbjct: 276 TFHVTDEEYLDRLYYESFHHT---EIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 332

Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
            II          L  HDI+E K+ +                + DFLA VSHE++TP+T+
Sbjct: 333 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 378

Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           I GFSE + +   G + N ++ E + + I +    +  ++ DLLD+SKIE     L+   
Sbjct: 379 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGT 435

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           V +   + +   ++   A EK I ++ +       ++ D   +KQI +N+++NAI +TP+
Sbjct: 436 VDMKGLLEDIHMVLDNKAGEKEISLQVNVLKRA-SVIGDPSRLKQIFINLINNAIVYTPA 494

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           GG + +           ++V DTG+G++  E+ +  + F ++  ++     GTGLGL + 
Sbjct: 495 GGVVSVELA-EDKYNAYIKVSDTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIV 553

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           K +V+A+ G   + S   +GT   ++ P
Sbjct: 554 KHLVEAHQGTITVDSEVGEGTTFTVVLP 581


>gi|30022663|ref|NP_834294.1| phosphate regulon sensor protein phoR [Bacillus cereus ATCC 14579]
 gi|29898222|gb|AAP11495.1| Phosphate regulon sensor protein phoR [Bacillus cereus ATCC 14579]
          Length = 587

 Score =  367 bits (943), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 92/388 (23%), Positives = 179/388 (46%), Gaps = 26/388 (6%)

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           +           +   + +  +E E    +L +++E    G+ +I+  G I   NR+  +
Sbjct: 216 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 275

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542
            F    E+ L + +           +   + EI   +++   + +  LG  ++   +   
Sbjct: 276 TFHVTDEEYLDRLYYESFHHT---EIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 332

Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
            II          L  HDI+E K+ +                + DFLA VSHE++TP+T+
Sbjct: 333 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 378

Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           I GFSE + +   G + N ++ E + + I +    +  ++ DLLD+SKIE     L+   
Sbjct: 379 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGT 435

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           V +   + +   ++   A EK I ++ +       ++ D   +KQI +N+++NAI +TP+
Sbjct: 436 VDMKGLLEDIHMVLDNKAGEKEISLQVNVLKRA-SVIGDPSRLKQIFINLINNAIVYTPA 494

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           GG + +           ++V DTG+G++  E+ +  + F ++  ++     GTGLGL + 
Sbjct: 495 GGVVSVELA-EDKYNAYIKVSDTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIV 553

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           K +V+A+ G   + S   +GT   ++ P
Sbjct: 554 KHLVEAHQGTITVDSEVGEGTTFTVVLP 581


>gi|75762015|ref|ZP_00741929.1| Phosphate regulon sensor protein phoR [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|218899741|ref|YP_002448152.1| sensory box histidine kinase PhoR [Bacillus cereus G9842]
 gi|74490501|gb|EAO53803.1| Phosphate regulon sensor protein phoR [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|218542354|gb|ACK94748.1| sensory box histidine kinase PhoR [Bacillus cereus G9842]
          Length = 587

 Score =  367 bits (943), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 92/388 (23%), Positives = 179/388 (46%), Gaps = 26/388 (6%)

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           +           +   + +  +E E    +L +++E    G+ +I+  G I   NR+  +
Sbjct: 216 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 275

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542
            F    E+ L + +           +   + EI   +++   + +  LG  ++   +   
Sbjct: 276 TFHVTDEEYLDRLYYESFHHT---EIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 332

Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
            II          L  HDI+E K+ +                + DFLA VSHE++TP+T+
Sbjct: 333 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 378

Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           I GFSE + +   G + N ++ E + + I +    +  ++ DLLD+SKIE     L+   
Sbjct: 379 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGT 435

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           V +   + +   ++   A EK I ++ +       ++ D   +KQI +N+++NAI +TP+
Sbjct: 436 VDMKGLLEDIHMVLDNKAGEKEISLQVNVLKRA-SVIGDPSRLKQIFINLINNAIVYTPA 494

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           GG + +           ++V DTG+G++  E+ +  + F ++  ++     GTGLGL + 
Sbjct: 495 GGVVSVELA-EDKYNAYIKVSDTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIV 553

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           K +V+A+ G   + S   +GT   ++ P
Sbjct: 554 KHLVEAHQGTITVDSEVGEGTTFTVVLP 581


>gi|114048941|ref|YP_739491.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-7]
 gi|113890383|gb|ABI44434.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-7]
          Length = 1236

 Score =  367 bits (943), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 123/594 (20%), Positives = 205/594 (34%), Gaps = 46/594 (7%)

Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291
           P  R+ + +   ++      + +     P          E + +           +    
Sbjct: 381 PASRLLSHLEGCSQEPRKPPEKITPGWEPWFLLVSRIFEENKQYTH------HLAEQNKR 434

Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLL 350
           L        E L          Y      L    +D  P    F    GN    N +   
Sbjct: 435 LDKLVARRTERLKDATERREREYA-----LLRSLLDSIPEAIVFKDKEGNYLGCNKAAER 489

Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
           +  Y   + I ++     L          A    +L             L          
Sbjct: 490 MLGYTESEMIGLSS--EDLTSPEMGIRIRAEDEQILKDRTPLRYQEKVELA------GKP 541

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA--II 468
           + +  +     N+  E      +  +      +  ++ +   +    ++A  DG+    +
Sbjct: 542 VLLDTLKLPFYNRRGELQGLIAVWRDVTREYESAEQLRLSEERYHLAMDAVEDGLWDWYL 601

Query: 469 NREGIILSTNRAVSKLFGYPVED--ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
           + E II   N +   + GY   +   L          +    +  Y  + L   +    E
Sbjct: 602 DSEHII--CNPSYYSMLGYKPNEFPALVSAIDQLTHPDDRIRVEEYRNQYLQNPVDA-YE 658

Query: 527 KITLGSTKEEKLLSLR-----IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE 581
                  K      +      +             T  DI+  K  +  L  AK+ AE  
Sbjct: 659 IEFRILGKNGSYHWVLSRGRVVEFTADGQPKRMVGTHKDITRHKSNEVALLEAKQDAELA 718

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
           + +KS+FLA +SHEIRTP+ AIIG  ++ +          +  +Y      S   +L I+
Sbjct: 719 NLYKSEFLANMSHEIRTPMNAIIGMLQLAQRTSLTA----QQKDYLEKAGFSAQSLLRII 774

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-AD 700
           ND+LD SKIE+GK+ L   P  LD+ +  A+ L  L A E+ + +          IL  D
Sbjct: 775 NDILDFSKIEAGKLELERVPFPLDKVLDHALDLNALKAQEQGVELLLYAPVTAGLILKGD 834

Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE------VILRVRDTGVGMTNYELE 754
              + Q+ +N+LSNA+ FT SG    I        E      +   VRDTG+G++  + E
Sbjct: 835 PLRLGQVLINLLSNAVKFTQSG---EIELGCEDVGERDHRITLKFWVRDTGIGISKDQQE 891

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           K    F Q   S   +  GTGLGL ++K +V    GK  + S    G+      
Sbjct: 892 KLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGKMQVQSELGVGSTFSFTI 945



 Score = 55.4 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 48/347 (13%), Positives = 101/347 (29%), Gaps = 30/347 (8%)

Query: 9   NPEDILTSNCKGNTQDLSK--KKIDNGFE-----TEKSKKENPCHDSFEQSNFTDQNQES 61
           +P   L S+ +G +Q+  K  +KI  G+E       +  +EN  +           ++  
Sbjct: 380 SPASRLLSHLEGCSQEPRKPPEKITPGWEPWFLLVSRIFEENKQYTHHLAEQNKRLDKLV 439

Query: 62  VSNTNYLDSENTFVFDP--------IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM 113
              T  L                          +  D  G     ++   + +G    +M
Sbjct: 440 ARRTERLKDATERREREYALLRSLLDSIPEAIVFK-DKEGNYLGCNKAAERMLGYTESEM 498

Query: 114 IGMRLCDVSDIL-HIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172
           IG+   D++     I        +LK +     +     +E     V +D   LP Y+R 
Sbjct: 499 IGLSSEDLTSPEMGIRIRAEDEQILKDRTPLRYQE---KVELAGKPVLLDTLKLPFYNRR 555

Query: 173 REFSGFRGFGIVHVN-RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231
            E  G     +     R       L    ++    +  ++ G      +   I    S  
Sbjct: 556 GELQGL--IAVWRDVTREYESAEQLRLSEERYHLAMDAVEDGLWDWYLDSEHIICNPSYY 613

Query: 232 PHLRMKNK----VSSLTEYYAHKDDVLKTEKYPL--LTSEESSLPEQEDFHTINLNQYTK 285
             L  K      + S  +   H DD ++ E+Y    L +   +   +      N + +  
Sbjct: 614 SMLGYKPNEFPALVSAIDQLTHPDDRIRVEEYRNQYLQNPVDAYEIEFRILGKNGSYHWV 673

Query: 286 KQYFGTLQ-NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI 331
                 ++     +    +      +     +       +  +   +
Sbjct: 674 LSRGRVVEFTADGQPKRMVGTHKDITRHKSNEVALLEAKQDAELANL 720


>gi|324328480|gb|ADY23740.1| phosphate regulon sensor protein [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 587

 Score =  367 bits (943), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 91/388 (23%), Positives = 180/388 (46%), Gaps = 26/388 (6%)

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           +           +   + +  +E E    +L +++E    G+ +I+  G I   NR+  +
Sbjct: 216 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 275

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542
            F    E+ L + +           +   + EI   +++   + +  LG  ++   +   
Sbjct: 276 TFHVTDEEYLDRLYYESFHH---PEIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 332

Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
            II          L  HDI+E K+ +                + DFLA VSHE++TP+T+
Sbjct: 333 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 378

Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           I GFSE + +   G + N ++ E + + I +    +  ++ DLLD+SKIE     L+   
Sbjct: 379 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGT 435

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           V +   + +   ++   A EK I ++ +    +  ++ D   ++QI +N+++NAI +TP+
Sbjct: 436 VDMKGLLEDIHMVLDNKAGEKEISLQVNTLKRV-SVIGDPSRLQQIFINLMNNAIVYTPA 494

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           GG + +           ++V DTG+G++  E+ +  + F ++  ++     GTGLGL + 
Sbjct: 495 GGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIV 553

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           K +V+A+ G   + S   +GT   ++ P
Sbjct: 554 KHLVEAHHGTITVDSEVGEGTTFTVVLP 581


>gi|75906463|ref|YP_320759.1| multi-component transcriptional regulator [Anabaena variabilis ATCC
            29413]
 gi|75700188|gb|ABA19864.1| multi-component transcriptional regulator, winged helix family
            [Anabaena variabilis ATCC 29413]
          Length = 1629

 Score =  367 bits (943), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 114/671 (16%), Positives = 241/671 (35%), Gaps = 60/671 (8%)

Query: 186  VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF-SQQSPPPHLRMKNKVSSLT 244
                   P A           L+         +        + ++      + +    + 
Sbjct: 697  DAEKSIHPVAQAGYEQGYLQSLNLTWADTIRGQGPTGTAIRTGKTAIIQNILTDPRFEIW 756

Query: 245  EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
               A       +   PL+ + ++           N     + +    L  +       L 
Sbjct: 757  RCQASNRGYASSISLPLMNNGQAFGALNIYAAEANAFDSDEVKLLEELTADVAYGIVALR 816

Query: 305  -HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSV----- 357
              R+     A   E +     T++   +  + ++   N    +     L   +S      
Sbjct: 817  NRRDRQIAEAALRESQERLALTLEAVNLGIWDWNITTNQIIWSEGHARLFGIESEKFDGT 876

Query: 358  -DDI------EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN-REN 409
             +        E  GGL+ ++++ +    +      +   D                  E 
Sbjct: 877  YEAFQACIYPEDRGGLAEVINSARQQKTDYSHEFRIISPDGNIHWIEGTGKLYYNEMGEA 936

Query: 410  SLAMTFIPFEKANQFPENMPQNG---------------------IEPEDVDTRINKRKME 448
               +  +    + +  E   Q                       ++ E  + +  +  + 
Sbjct: 937  VRMLGIVRDITSRKQIEATLQKVNNELELRVAERTAELVNVNRQLQSELDERQRVEEALR 996

Query: 449  IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
            I  ++L  IL+   D I  IN    I   N+   K+FGY  E I+ +     + Q     
Sbjct: 997  ISQVRLARILDIADDAIISINGNQQITLFNQGAEKIFGYSAEAIIGQRLDTLIPQRFTQA 1056

Query: 509  MNHYLT---EILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCYSLTMHDISE 563
               ++    +  +L  R    +   G  ++         I   +L     Y++ + DI+E
Sbjct: 1057 HRQHVADFGQAPNLARRMGERREIFGRRQDGTEFPAEASISKFQLDKEVFYTVILRDITE 1116

Query: 564  WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             KQ +                K +F++ VSHE+RTPLT+I G   ++ +    P  + + 
Sbjct: 1117 RKQIE--------------RMKDEFVSVVSHELRTPLTSIHGSLGMLASGLL-PADSEQG 1161

Query: 624  IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
                     S   ++ ++ND+LDI +IESG++ +  E  +L + +  A+S+++  AN+  
Sbjct: 1162 RRLLEIATDSTERLVRLINDILDIERIESGRVKMERESCNLTDLIESAVSIMRPLANKAG 1221

Query: 684  ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
            + +  S  +   ++  D   + Q   N+LSNAI F+ +   + +       +E+++ V+D
Sbjct: 1222 VKLSVSHPS--IQLWVDPDRIVQTLTNLLSNAIKFSTAEKTVWL-VAQQYGDELLVTVKD 1278

Query: 744  TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
             G G+   +L+   + F Q+ +S     +GTGLGL + +++V  + G+ +  S  ++G+ 
Sbjct: 1279 NGRGIPADKLDSIFERFQQVDSSDSRNHDGTGLGLAICQSIVQQHGGRIWAESVLSEGSN 1338

Query: 804  IEIIFPLYDTS 814
                 P+   S
Sbjct: 1339 FYFTLPILPIS 1349



 Score = 68.5 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 49/407 (12%), Positives = 126/407 (30%), Gaps = 38/407 (9%)

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKN------KVSSLTEYYAHKDDVLK 255
           +    +  +++   + ++ +    +Q++  P LR +          SL  +   +   L 
Sbjct: 263 RVDEQVKVLEQAAMTSDRPEIVTLTQETLNPELRSQAIREAHTLAGSLGTFGLPEGSKLA 322

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
            +   LL S +   P +       +    ++      Q  S E+      +  P  +   
Sbjct: 323 RKIEQLLKSGKKLTPTEIQSLQNWVKLLRQEVAAHEPQAASPETTSAAILQLQPPQAEAK 382

Query: 316 DEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
               +  P+ +         +    +   +P     T      D+        L+   ++
Sbjct: 383 VLAVDDDPQILAILQTLLHPWGLQVITLDDPRQFWETLRDVNPDL--------LILDVEM 434

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
              N I+   + R+D           T+  + E    +  +  +     P   P+     
Sbjct: 435 PYTNGIELCQVVRNDPQWSELPILFLTVHKDGEIVNQVFSVGADDFVSKPIVGPELVT-- 492

Query: 436 EDVDTRINKRKMEIEVMQ-----------------LCSILEATSDGIAIINREGIILSTN 478
             +  R+ + K+  +V +                   +I  A  + + I+  +G +L  N
Sbjct: 493 -RIINRLERVKLLHKVSESRGIGEKNSPPSPSFTDWRTIFNAEPECVTIVATDGTLLDIN 551

Query: 479 RAV-SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
            A  + +       ++ K     +      V    L E +    + TLE   +      +
Sbjct: 552 PAGVAAIEADSAGAVIGKRVYSLVVPEYQQVFRQ-LNESVCQGEQGTLEFEIITCRGNRR 610

Query: 538 LLSLRIIIKKLPFSSCYS--LTMHDISEWKQEKNKLSHAKKIAEKES 582
            ++   +  +              D++++KQ + ++    +  +  S
Sbjct: 611 WMATHAVPVRNETDGNLVQLSITRDVTQYKQAELEIKRINRTLQTLS 657


>gi|229158190|ref|ZP_04286257.1| hypothetical protein bcere0010_43680 [Bacillus cereus ATCC 4342]
 gi|228625148|gb|EEK81908.1| hypothetical protein bcere0010_43680 [Bacillus cereus ATCC 4342]
          Length = 558

 Score =  367 bits (943), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 91/388 (23%), Positives = 180/388 (46%), Gaps = 26/388 (6%)

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           +           +   + +  +E E    +L +++E    G+ +I+  G I   NR+  +
Sbjct: 187 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 246

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542
            F    E+ L + +           +   + EI   +++   + +  LG  ++   +   
Sbjct: 247 TFHVTDEEYLDRLYYESFHH---PEIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 303

Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
            II          L  HDI+E K+ +                + DFLA VSHE++TP+T+
Sbjct: 304 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 349

Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           I GFSE + +   G + N ++ E + + I +    +  ++ DLLD+SKIE     L+   
Sbjct: 350 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGT 406

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           V +   + +   ++   A EK I ++ +    +  ++ D   ++QI +N+++NAI +TP+
Sbjct: 407 VDMKGLLEDIHMVLDNKAGEKEISLQVNALKRV-SVIGDPSRLQQIFINLMNNAIVYTPA 465

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           GG + +           ++V DTG+G++  E+ +  + F ++  ++     GTGLGL + 
Sbjct: 466 GGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIV 524

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           K +V+A+ G   + S   +GT   ++ P
Sbjct: 525 KHLVEAHHGTITVDSEVGEGTTFTVVLP 552


>gi|52140921|ref|YP_085908.1| phosphate regulon sensor protein [Bacillus cereus E33L]
 gi|51974390|gb|AAU15940.1| phosphate regulon sensor protein [Bacillus cereus E33L]
          Length = 587

 Score =  367 bits (943), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 91/388 (23%), Positives = 180/388 (46%), Gaps = 26/388 (6%)

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           +           +   + +  +E E    +L +++E    G+ +I+  G I   NR+  +
Sbjct: 216 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 275

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542
            F    E+ L + +           +   + EI   +++   + +  LG  ++   +   
Sbjct: 276 TFHVTDEEYLDRLYYESFHH---PEIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 332

Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
            II          L  HDI+E K+ +                + DFLA VSHE++TP+T+
Sbjct: 333 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 378

Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           I GFSE + +   G + N ++ E + + I +    +  ++ DLLD+SKIE     L+   
Sbjct: 379 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGT 435

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           V +   + +   ++   A EK I ++ +    +  ++ D   ++QI +N+++NAI +TP+
Sbjct: 436 VDMKGLLEDIHMVLDNKAGEKEISLQVNALKRV-SVIGDPSRLQQIFINLMNNAIVYTPA 494

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           GG + +           ++V DTG+G++  E+ +  + F ++  ++     GTGLGL + 
Sbjct: 495 GGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIV 553

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           K +V+A+ G   + S   +GT   ++ P
Sbjct: 554 KHLVEAHHGTITVDSEVGEGTTFTVVLP 581


>gi|47564998|ref|ZP_00236041.1| sensory box histidine kinase PhoR [Bacillus cereus G9241]
 gi|47557784|gb|EAL16109.1| sensory box histidine kinase PhoR [Bacillus cereus G9241]
          Length = 587

 Score =  367 bits (943), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 91/388 (23%), Positives = 180/388 (46%), Gaps = 26/388 (6%)

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           +           +   + +  +E E    +L +++E    G+ +I+  G I   NR+  +
Sbjct: 216 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 275

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542
            F    E+ L + +           +   + EI   +++   + +  LG  ++   +   
Sbjct: 276 TFHVTDEEYLDRLYYESFHH---PEIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 332

Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
            II          L  HDI+E K+ +                + DFLA VSHE++TP+T+
Sbjct: 333 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 378

Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           I GFSE + +   G + N ++ E + + I +    +  ++ DLLD+SKIE     L+   
Sbjct: 379 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGT 435

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           V +   + +   ++   A EK I ++ +    +  ++ D   ++QI +N+++NAI +TP+
Sbjct: 436 VDMKGLLEDIHMVLDNKAGEKEISLQVNALKRV-SVIGDPSRLQQIFINLMNNAIVYTPA 494

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           GG + +           ++V DTG+G++  E+ +  + F ++  ++     GTGLGL + 
Sbjct: 495 GGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIV 553

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           K +V+A+ G   + S   +GT   ++ P
Sbjct: 554 KHLVEAHHGTITVDSEVGEGTTFTVVLP 581


>gi|258514365|ref|YP_003190587.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257778070|gb|ACV61964.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 458

 Score =  367 bits (943), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 87/368 (23%), Positives = 168/368 (45%), Gaps = 23/368 (6%)

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
           E  +  +IL++ +DG+  ++REG +L  N AV  +F         K     +       +
Sbjct: 112 EKNRARAILDSMADGVIALDREGKVLLVNPAVEDIFAIENPADQVKNILGIIR---NYEL 168

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQE 567
              L   L  +         L S  E ++  + +   +   +        + DI++ ++ 
Sbjct: 169 EQLLFHALKRNEPMVKVLKILTSE-EPRVFRVHLTPLRSSDTKTEGIVAVLRDITDRRKL 227

Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
           +                +++F+A VSHE+RTPLT+I GF E + +             + 
Sbjct: 228 E--------------QMRTEFVANVSHELRTPLTSISGFLETLLDGAL--EEPEIARRFL 271

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
            ++      +  ++NDLL++S IE  +   +F+PV + E +     + +  A EK + + 
Sbjct: 272 EHMSDETERLTRLINDLLNLSNIEDRQFVPNFQPVDMAELIHRVAPVYEPRAREKGLTLM 331

Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747
            + + N+P ++ D   + Q+  N++ NAI +TP+ G+I I    +  E  ++ V DTG+G
Sbjct: 332 VTLSPNLPPVIGDEDLLMQVLTNLIDNAIKYTPAKGKIEIKARASEQEMKVI-VTDTGIG 390

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           +    L +  + F ++  ++     GTGLGL + K +V+ + G   + ST  KG++   I
Sbjct: 391 IPTESLARIFERFYRVDKARSREMGGTGLGLSIVKHIVERHGGSLEVTSTVGKGSIFAFI 450

Query: 808 FPLYDTSH 815
            P+    H
Sbjct: 451 LPVAGDLH 458



 Score = 40.4 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 24/241 (9%), Positives = 57/241 (23%), Gaps = 11/241 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D  G +  ++  +               +  +     ++    +   LKR         
Sbjct: 130 LDREGKVLLVNPAVEDIFAIENPADQVKNILGIIRNYELEQ--LLFHALKRNEPMVKVLK 187

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           +   E   ++    +   P+ S + +  G     ++           +        SH  
Sbjct: 188 ILTSEEPRVFR---VHLTPLRSSDTKTEGI--VAVLRDITDRRKLEQMRTEFVANVSHEL 242

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
                  S   E     + + P    R    +S  T     +   L  +   L   E+  
Sbjct: 243 RTPLTSISGFLETLLDGALEEPEIARRFLEHMSDET----ERLTRLINDLLNLSNIEDRQ 298

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
                    +    +     +         +       N P +    D    +    +D 
Sbjct: 299 FVPNFQPVDMAELIHRVAPVYEPRAREKGLTLMVTLSPNLPPVIGDEDLLMQVLTNLIDN 358

Query: 329 C 329
            
Sbjct: 359 A 359


>gi|309791477|ref|ZP_07685981.1| PAS fold family protein [Oscillochloris trichoides DG6]
 gi|308226474|gb|EFO80198.1| PAS fold family protein [Oscillochloris trichoides DG6]
          Length = 1306

 Score =  367 bits (943), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 138/642 (21%), Positives = 245/642 (38%), Gaps = 37/642 (5%)

Query: 184 VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL 243
           V             + LD+    ++        +    YD+ S  +    + M+      
Sbjct: 284 VDDGHTKAQICVPIRSLDQVLGVINVESTRPGKLGNADYDLLSALADHLAVMMERAQLYQ 343

Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303
            +     + +L         S + +         +       +     L ++ +      
Sbjct: 344 EQQRTVSETLLLNRVISATMSNDVATVLNVVCRELAGAFNVPQVACALLDDDEQNLTVVS 403

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIA 363
                   S        +    V++      V+S  +    + +        S D  E  
Sbjct: 404 EFCIPGRPSGMGAIIPKVGNALVEE------VFSTRSPIQISNTHTDQRALASADLFERR 457

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL-HTIQWNRENSLAMTFIPFEKAN 422
           G  + L+    + D       +     RT       L   + W    +L           
Sbjct: 458 GTAAILVLPVLIRDAVVGTIGIDALEPRTFTPEEIDLAQAVIWAAGQAL----------- 506

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
                   N ++ E  +    +  +     Q+  ILE+ +D    ++        N+   
Sbjct: 507 --ANVQLTNALQQELAERSRTEAALRESTTQISRILESITDAFFAVDSNWRFTYVNQESE 564

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
           +L G P E ++ + F     +     M       L    + TL+  T     E +   +R
Sbjct: 565 RLLGKPREQLIGQDFWSIFPKPLGVDMEPNHRYALKT--QTTLQFETYTPQYE-RWFEVR 621

Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
                       ++ + DI+  K    +L  AK+ AE  +  KSDFLA +SHEIRTP+ A
Sbjct: 622 DYPSP----DGLAIYLRDITAQKHTHMELVEAKEAAEAATRAKSDFLATMSHEIRTPMNA 677

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           +IG + ++ +       N    ++   I  SG+ +L I+ND+LD SKIESGK  L  +P 
Sbjct: 678 VIGMTGLLLDTPL----NAEQRDFVETIRNSGDALLTIINDILDFSKIESGKFELEQQPF 733

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPS 721
            L + +  A+ LV   A EK+I +    A N+P+ I  D+  V+QI +N+L+NA+ FTP+
Sbjct: 734 DLRDCLEAALDLVSARAAEKQIDLAYMIARNVPQAIEGDVTRVRQILVNLLANAVKFTPA 793

Query: 722 GGQIIISTTHTSNE---EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
           G  +++       +   EV + VRDTG+G+    L +  K F Q+  S   +  GTGLGL
Sbjct: 794 GEVVVMIEGRRIRDQLFEVHIAVRDTGIGIPADRLNRLFKAFSQVDASTTRQYGGTGLGL 853

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIF--PLYDTSHPHD 818
            +++ +     G+ ++ ST   G+        P  ++   HD
Sbjct: 854 AISQRLCALMGGRMWVESTVGVGSTFHFTIIAPAAESPQRHD 895



 Score = 44.6 bits (104), Expect = 0.073,   Method: Composition-based stats.
 Identities = 27/245 (11%), Positives = 68/245 (27%), Gaps = 24/245 (9%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD-ILHIDPNNHIGDLLKRQNTWYG 145
           + +D++     +++E  + +G    ++IG     +    L +D   +    LK Q T   
Sbjct: 548 FAVDSNWRFTYVNQESERLLGKPREQLIGQDFWSIFPKPLGVDMEPNHRYALKTQTTLQF 607

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI-VHVNRVDNDPRALGKRLDKKF 204
           +T              ++   P            G  I +                 +  
Sbjct: 608 ETYT-----PQYERWFEVRDYPSPD---------GLAIYLRDITAQKHTHMELVEAKEAA 653

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL-T 263
                 K    +    +          P   +      L +   + +     E       
Sbjct: 654 EAATRAKSDFLATMSHEIR-------TPMNAVIGMTGLLLDTPLNAEQRDFVETIRNSGD 706

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
           +  + + +  DF  I   ++  +Q    L++  + + + +S R                P
Sbjct: 707 ALLTIINDILDFSKIESGKFELEQQPFDLRDCLEAALDLVSARAAEKQIDLAYMIARNVP 766

Query: 324 ETVDK 328
           + ++ 
Sbjct: 767 QAIEG 771


>gi|320353526|ref|YP_004194865.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
           2032]
 gi|320122028|gb|ADW17574.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
           2032]
          Length = 930

 Score =  367 bits (943), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 119/546 (21%), Positives = 221/546 (40%), Gaps = 30/546 (5%)

Query: 284 TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY 343
             +    +          Y +       +   ++      +T +     F +     +  
Sbjct: 150 WHRYRKSSFLARQTLEQLYRASEERRRAAESAEQAWVRIIDTSENL--LFVIDRTFRILR 207

Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403
            N +F         + +        L    +   +  +  ++L   D         L   
Sbjct: 208 VNLAFARRLGISKEEVVGRR-CYELLCRHREPLPSCPLHAIIL---DHQPRTVETILPPW 263

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
            ++         +     +   ++     I  +  + + ++R++     Q  S+++ +  
Sbjct: 264 NFD------CRMMAAPLLDASGQHEATVFIIQDISEHKRSERELRAAREQYQSLVQNSHG 317

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
            I  I+  G++   +   +KL G+  + I+ K F   +  +  ++   +  E+      +
Sbjct: 318 IIYTISPHGVVTYVSPGYTKLLGHEPDHIVGKHFREIVHPDDVALCEDFYREVWEHGEIR 377

Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAE 579
                     ++  +         L         +     DI+E KQ + +L  A++ AE
Sbjct: 378 R-GLEYRIPHRDGSIRWHLSNFIPLTNEEGEIESFVGNAMDITEQKQHQAELQAAREAAE 436

Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639
             S  KSDFLA +SHEIRTPL AI+GFS + +    G     +  EY + +D+S  L++D
Sbjct: 437 AASRAKSDFLALISHEIRTPLNAIVGFSALARRTADGV----QLREYVDILDQSSRLLMD 492

Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-IL 698
           +VND+LD+SK+E+G++ L   P +L EAV          A  K++  +      +P  I 
Sbjct: 493 LVNDVLDMSKVEAGQLQLESIPFNLPEAVDLLQWQFAPVAARKQLDFQVIREETLPPWIQ 552

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-------EVILRVRDTGVGMTNY 751
            D    +QIA N+LSNA+ FT SG  +++  T             V L VRDTG+G+   
Sbjct: 553 GDPIRFRQIASNLLSNAMKFTESG-CVLLRVTAQDQAPGVEGRCLVRLEVRDTGIGIEAR 611

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
           ++    +PF Q+      +  GTGLGL +   +V+   G+  + STP  G+   +  P  
Sbjct: 612 QIASLFQPFQQLDPGISRKYGGTGLGLAIVHRLVELMQGRVEVASTPGTGSSFTVELPFV 671

Query: 812 DTSHPH 817
            +S P 
Sbjct: 672 LSSPPQ 677



 Score = 70.8 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 72/193 (37%), Gaps = 9/193 (4%)

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
           +   N++           +    + +  +E     +   +R  E        I++ + + 
Sbjct: 136 YAGANTIGWIVSANWHRYRKSSFLARQTLEQLYRASEERRRAAESAEQAWVRIIDTSENL 195

Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
           + +I+R   IL  N A ++  G   E+++ +     L ++   + +  L  I+     +T
Sbjct: 196 LFVIDRTFRILRVNLAFARRLGISKEEVVGRRCYELLCRHREPLPSCPLHAIILDHQPRT 255

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAEK 580
           +E I             R++   L  +S         + DISE K+ + +L  A++  + 
Sbjct: 256 VETILPP-----WNFDCRMMAAPLLDASGQHEATVFIIQDISEHKRSERELRAAREQYQS 310

Query: 581 ESSHKSDFLARVS 593
              +    +  +S
Sbjct: 311 LVQNSHGIIYTIS 323



 Score = 60.0 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/234 (9%), Positives = 57/234 (24%), Gaps = 12/234 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWY 144
            + I  HG +  +S    K +G+    ++G    ++     +    +   ++ +      
Sbjct: 319 IYTISPHGVVTYVSPGYTKLLGHEPDHIVGKHFREIVHPDDVALCEDFYREVWEHGEIRR 378

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
           G     P    ++        +P+ +   E   F G  +          +A  +   +  
Sbjct: 379 GLEYRIPHRDGSIR-WHLSNFIPLTNEEGEIESFVGNAM--DITEQKQHQAELQAAREAA 435

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQ---SPPPHLRMKNKVSSLTEYYAHKDDVLKTEK--- 258
                 K    ++   +                R  + V                     
Sbjct: 436 EAASRAKSDFLALISHEIRTPLNAIVGFSALARRTADGVQLREYVDILDQSSRLLMDLVN 495

Query: 259 --YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310
               +   E   L  +     +       +  F  +    +  F+ +     P 
Sbjct: 496 DVLDMSKVEAGQLQLESIPFNLPEAVDLLQWQFAPVAARKQLDFQVIREETLPP 549



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/238 (10%), Positives = 61/238 (25%), Gaps = 13/238 (5%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS-DILHIDPNNHIGDLLKRQNTW 143
             + ID    +  ++    + +G    +++G R  ++        P+  +  ++      
Sbjct: 195 LLFVIDRTFRILRVNLAFARRLGISKEEVVGRRCYELLCRHREPLPSCPLHAIILDHQPR 254

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +T L P           + A P+   + +        I+             +   ++
Sbjct: 255 TVETILPP-----WNFDCRMMAAPLLDASGQ--HEATVFIIQDISEHKRSERELRAAREQ 307

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPP---HLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
           +  L +   G          +                + V        H DDV   E + 
Sbjct: 308 YQSLVQNSHGIIYTISPHGVVTYVSPGYTKLLGHEPDHIVGKHFREIVHPDDVALCEDFY 367

Query: 261 LLTSEES--SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
               E        +      + +       F  L N   E   ++ +    +      
Sbjct: 368 REVWEHGEIRRGLEYRIPHRDGSIRWHLSNFIPLTNEEGEIESFVGNAMDITEQKQHQ 425


>gi|304412088|ref|ZP_07393698.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183]
 gi|307305983|ref|ZP_07585729.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175]
 gi|304349638|gb|EFM14046.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183]
 gi|306911476|gb|EFN41902.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175]
          Length = 1629

 Score =  367 bits (943), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 121/778 (15%), Positives = 265/778 (34%), Gaps = 60/778 (7%)

Query: 90   DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNTWYGKT 147
            D  G +   ++   +  G      +G   C +     I         ++L  + +    T
Sbjct: 363  DTKGQITSWNQGAEQLFGYTEAHALGQSCCKLIVPASIVQEERALFAEVLAGKTSLNRIT 422

Query: 148  TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA----LGKRLDKK 203
            +    +G++L       A+PIY  + + +G      +       +       L   L+++
Sbjct: 423  SHQRQDGSHLSTSTT--AVPIYDEHGKIAGMSQ--TIRDITAQLEAERHILSLNASLERQ 478

Query: 204  FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM------------------KNKVSSLTE 245
             +      +      +   D  +QQ                          + ++   T 
Sbjct: 479  VTKRTHALQQALLENQTLLDTINQQLLYSVTDPNGVILEVNDNFCRISGYSREQLVGKTH 538

Query: 246  YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTIN--LNQYTKKQYFGTLQNNSKESFEYL 303
                  +   +    +     S      +   ++            G + +   +   ++
Sbjct: 539  AILQSGEHDVSFWRSMWQQINSGQSWHGEICNLDKHQTLKWFDTVIGPVFDEYGKIERFV 598

Query: 304  SHRNHPSLSAYFDEGENLTPETVDKCPIP------FFVYSHGNLFYANPSFLLLTKYKSV 357
            + R   +        +N     +                  GN+   N     L  Y + 
Sbjct: 599  ALRIDITDRKLTQIEKNNLGSLLTNVLDAASEMSIIATDVQGNITIFNRGAERLLGYSAE 658

Query: 358  DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA--------SARLHTIQWNREN 409
            + I  +      L    +  +  +            +            R  T      +
Sbjct: 659  EMIGQSTPAPLHLLEEVMIRSAELSAEYGKDIQGFDVFVYKAKAEGSETRNWTYVRKDGS 718

Query: 410  SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469
               ++       +   E +   GI  +     + ++ +      L    E    GI   N
Sbjct: 719  QFQVSLSVTAMRDSVGEIIGYLGIGVDISLMLLQQQALMTASNHLSKAAEVAQLGIWTWN 778

Query: 470  REGIILSTNRAVSKLFG----YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
              G  L  N  +  ++        + +  + +++ +  +  +  +  L   +    +   
Sbjct: 779  LLGNSLEWNERMFAIYDQPESLREQGLTYEHWSMRVHPDDIAFADAKLKGAVEGTAQYDP 838

Query: 526  EKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
                + +    + +     +++              DI+E +Q +  L  AK+ A+  S+
Sbjct: 839  IFRVVRTDGSIRYVQAAAQVERDKQGHAIRVIGINLDITEQQQLEESLREAKQEADAASA 898

Query: 584  HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
             KS FLA +SHEIRTP+ A++G  ++I+          +  +Y N    +   +L ++ND
Sbjct: 899  AKSAFLANMSHEIRTPMNAVLGMLQLIQYTSLSR----QQQDYVNKTQTAAKSLLGLLND 954

Query: 644  LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLR 702
            +LD SKI++GK+ L   P S++  + +   ++     +K + +       +P  +LAD  
Sbjct: 955  ILDFSKIDAGKLVLDLHPCSIELLMRDLAVVLSGNHGDKDVEVMFDLDTALPPWLLADQL 1014

Query: 703  SVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVI--LRVRDTGVGMTNYELEKAMKP 759
             ++QI +N+  NA+ FT  G  I+ I       + V   + + DTG+G+++ ++E+    
Sbjct: 1015 RLQQILVNLAGNALKFTHHGQVIVGIECLRHEADTVTVQISITDTGIGISDEQIERIFTG 1074

Query: 760  FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI--IFPLYDTSH 815
            F Q  +S   R  GTGLGL ++K ++     +  + S    G+       FP+     
Sbjct: 1075 FEQAESSTSRRFGGTGLGLAISKRLIGLMGSELQVTSKVGVGSRFWFDMTFPIIQVEE 1132



 Score =  105 bits (261), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 53/426 (12%), Positives = 113/426 (26%), Gaps = 35/426 (8%)

Query: 168 IYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ 227
               + EF G RGFG +   RV +   A      ++        +  ++ + E+Y I   
Sbjct: 92  TRDVDHEFPGARGFGFIR--RVPSADEAAFIARARQDDWPDFNIRQLNAHDGERYVIEYI 149

Query: 228 QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287
           +   P  R K  V       AH+                + +   +       +    + 
Sbjct: 150 E---PVDRNKAAVGLDIASEAHRKAAADAAMLSGEVRLSAPITLVQATGRPLQSFLILQP 206

Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPS 347
            +                             ++           P            N  
Sbjct: 207 IY--------------------RTGLVPKSQQDRLSAGYGWSYAPLVTNEVLMGLALNQK 246

Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
              L     + DI  A    +  +      +           D         +       
Sbjct: 247 MTKLL----LSDITQAERPISFFETHPDEASPLSAYRHKMTKDIFGRQWQIEVIAYPSFI 302

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
           ++           +      +    I    +  +  ++ +  +  +  S+LE + DGI  
Sbjct: 303 KSLHLNQPSLVLLSGSLFSLLLAALIAMWSISLQRKQQVLLEQARR-ASMLEHSLDGIIS 361

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
            + +G I S N+   +LFGY     L +     +   +       L   +       L +
Sbjct: 362 YDTKGQITSWNQGAEQLFGYTEAHALGQSCCKLIVPASIVQEERALFAEVLAGKTS-LNR 420

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESS 583
           IT    ++   LS       +            T+ DI+   + +  +       E++ +
Sbjct: 421 ITSHQRQDGSHLSTSTTAVPIYDEHGKIAGMSQTIRDITAQLEAERHILSLNASLERQVT 480

Query: 584 HKSDFL 589
            ++  L
Sbjct: 481 KRTHAL 486



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 38/389 (9%), Positives = 103/389 (26%), Gaps = 29/389 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL-HIDPNNHIGDLLKRQNTWYGKT 147
            D +G + E+++   +  G    +++G     +      +     +   +    +W+G+ 
Sbjct: 509 TDPNGVILEVNDNFCRISGYSREQLVGKTHAILQSGEHDVSFWRSMWQQINSGQSWHGEI 568

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA--LGKRLDKKFS 205
                  T  +    +   P++    +   F    I   +R         LG  L     
Sbjct: 569 CNLDKHQTLKWFDTVIG--PVFDEYGKIERFVALRIDITDRKLTQIEKNNLGSLLTNVLD 626

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
              E+    + V+                  +  +   T    H  + +      L    
Sbjct: 627 AASEMSIIATDVQGNITIFNRGAERLLGYSAEEMIGQSTPAPLHLLEEVMIRSAELSAEY 686

Query: 266 ESSLPEQEDF----------------HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
              +   + F                   + +Q+        ++++  E   YL      
Sbjct: 687 GKDIQGFDVFVYKAKAEGSETRNWTYVRKDGSQFQVSLSVTAMRDSVGEIIGYLGIGVDI 746

Query: 310 SLSAYFDE----GENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAG 364
           SL     +      N   +  +   +  + ++  GN    N     +  Y   + +   G
Sbjct: 747 SLMLLQQQALMTASNHLSKAAEVAQLGIWTWNLLGNSLEWNERMFAI--YDQPESLREQG 804

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
                       D+ A     L  +             ++ +  +   +      + ++ 
Sbjct: 805 LTYEHWSMRVHPDDIAFADAKLKGAVEGTAQYDPIFRVVRTDG-SIRYVQAAAQVERDKQ 863

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
              +   GI  +  + +  +  +     +
Sbjct: 864 GHAIRVIGINLDITEQQQLEESLREAKQE 892


>gi|159897671|ref|YP_001543918.1| PAS/PAC sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159890710|gb|ABX03790.1| PAS/PAC sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 631

 Score =  367 bits (942), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 118/504 (23%), Positives = 211/504 (41%), Gaps = 15/504 (2%)

Query: 314 YFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
             +  E L  +T     +  + +    N  +       +    + +        +     
Sbjct: 128 ESNRLERLLLQTEQTARVGGWEIDLRTNQVFWTREMYHILDTTAHEYTPTIENQNFFHTN 187

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
             L    AI   M+ +     ++   R    +                  +F + +   G
Sbjct: 188 ATLIQLEAIFRQMIEQRGSFDMSVEMRTFRGRSFWGRFTG------RVELEFGQPIKIYG 241

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
              +  +       + +      +I E T  GI  I  +G +L  N A+ +L G+  E  
Sbjct: 242 SLQDVTEHHQLTEALRVAEHDYRTIFETTKIGIFRITPDGRVLRANPALVRLAGFAHEHE 301

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
           L                  YL E+L  +      +  +      + + +    + +    
Sbjct: 302 LVDYVADLTTMYVEPQRFEYLRELLQTNGSYDEIESEVYRPATGERIWISETSRLVYAED 361

Query: 553 CYS----LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                   T+ +I+  KQ +  L HA+  AE  +  KS FLA +SHE+RTPL AIIG+SE
Sbjct: 362 GSMLYAEGTIQEITARKQVEEALRHARDAAEAANHAKSTFLANMSHELRTPLNAIIGYSE 421

Query: 609 VIKNQRF--GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
           ++ +      P    ++      I+ +G+ +L++VND+LD++K+E+GK  +  E   L+ 
Sbjct: 422 LLMDDTDFDDPTMVEQFRHDIAQINDAGHQLLNLVNDVLDLAKVEAGKYQVAAETFDLNS 481

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726
            V + I+ +   A +    +      ++P I  D   ++QI LN+LSNA  FT +G  I 
Sbjct: 482 LVRDLIATINPMAQKNANSLYFEPNKHLPLIHTDRSMLRQILLNLLSNAAKFTKAGS-IN 540

Query: 727 ISTTHTS-NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
           IS +    ++ V  RVRDTG+GM + ++++  +PF Q   S   R  GTGLGL L +  +
Sbjct: 541 ISVSFDPASQHVQCRVRDTGIGMNDEQMQRLFEPFTQGDASTTRRYGGTGLGLALCRHFI 600

Query: 786 DANMGKFYIFSTPAKGTLIEIIFP 809
           +   G   + S   +G++  I+FP
Sbjct: 601 ELLNGSIQVESVFGQGSIFTIVFP 624



 Score = 57.7 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 12/141 (8%), Positives = 38/141 (26%), Gaps = 3/141 (2%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL-HIDPNNHIGDLLKRQNTWY 144
            + I   G +   +  L +  G      +   + D++ +        ++ +LL+   ++ 
Sbjct: 274 IFRITPDGRVLRANPALVRLAGFAHEHELVDYVADLTTMYVEPQRFEYLRELLQTNGSYD 333

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
              +      T   + I   +  +Y+ +       G   +             +      
Sbjct: 334 EIESEVYRPATGERIWISETSRLVYAEDGSMLYAEG--TIQEITARKQVEEALRHARDAA 391

Query: 205 SHLHEIKKGHSSVEKEKYDIF 225
              +  K    +    +    
Sbjct: 392 EAANHAKSTFLANMSHELRTP 412



 Score = 57.7 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 41/381 (10%), Positives = 104/381 (27%), Gaps = 33/381 (8%)

Query: 82  TVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL--KR 139
            V   W     G     ++ +   IG    ++      +        P       L    
Sbjct: 32  PVGLVW---FQGSQVFFNQAVTAMIGYSNAEI---ATTEQWFSTLYGPEAASMRQLYATT 85

Query: 140 QNTWYGKTTL---WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRAL 196
                G+T        +  +  +   LA+           G R   +V      N    L
Sbjct: 86  SAATLGQTIHGFVVNRQNQSCLLECTLASH----------GHRQVWLVRDITESNRLERL 135

Query: 197 GKRLDKKFSH---LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253
             + ++         +++       +E Y I    +      ++N+    T     + + 
Sbjct: 136 LLQTEQTARVGGWEIDLRTNQVFWTREMYHILDTTAHEYTPTIENQNFFHTNATLIQLEA 195

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
           +  +      S + S+  +         ++T +          K          H  L+ 
Sbjct: 196 IFRQMIEQRGSFDMSVEMRTFRGRSFWGRFTGRVELE-FGQPIKIYGSLQDVTEHHQLTE 254

Query: 314 YFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSV-DDIEIAGGLSTLLD 371
                E+      +   I  F +   G +  ANP+ + L  +    + ++    L+T+  
Sbjct: 255 ALRVAEHDYRTIFETTKIGIFRITPDGRVLRANPALVRLAGFAHEHELVDYVADLTTMYV 314

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
            P+  +        L +++ +     + +   +      + ++        +    +   
Sbjct: 315 EPQRFEYLRE----LLQTNGSYDEIESEV--YRPATGERIWISETSRLVYAEDGSMLYAE 368

Query: 432 GIEPEDVDTRINKRKMEIEVM 452
           G   E    +  +  +     
Sbjct: 369 GTIQEITARKQVEEALRHARD 389



 Score = 43.1 bits (100), Expect = 0.22,   Method: Composition-based stats.
 Identities = 21/138 (15%), Positives = 47/138 (34%), Gaps = 9/138 (6%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI--LRKPFTVFL 501
           +R++     +    LE    G+     +G  +  N+AV+ + GY   +I    + F+   
Sbjct: 14  QRRLIKATRRKDVTLEQFPVGLVWF--QGSQVFFNQAVTAMIGYSNAEIATTEQWFSTLY 71

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDI 561
                      + ++ +     TL +   G     +  S  +              + DI
Sbjct: 72  GPE-----AASMRQLYATTSAATLGQTIHGFVVNRQNQSCLLECTLASHGHRQVWLVRDI 126

Query: 562 SEWKQEKNKLSHAKKIAE 579
           +E  + +  L   ++ A 
Sbjct: 127 TESNRLERLLLQTEQTAR 144


>gi|294624495|ref|ZP_06703177.1| two-component system sensor protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292601208|gb|EFF45263.1| two-component system sensor protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 1364

 Score =  367 bits (942), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 130/706 (18%), Positives = 256/706 (36%), Gaps = 65/706 (9%)

Query: 164 AALPIYSRNREFSGFR-----GFGIV----HVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214
           +  P+ +     SG+R     GF ++            P+               +++  
Sbjct: 185 SGAPVMTSPISLSGYRVPNESGFLVLLAVYREGMPLQTPQQRMLATSGWVYAPFSVEQMV 244

Query: 215 SSVEKEKYDI-FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE 273
            S   E+ D+               +  +     A +  V++       T   ++ P   
Sbjct: 245 RSALGERDDVALDLSDRNEPTHNFYRSGTPASDSALRPPVVRLLPIYGRTWVITAHPTAG 304

Query: 274 DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF 333
              ++N +            +    +   L   N         +   L            
Sbjct: 305 FVASLNQSSPWLIGGLVMAASVLFAALLVLYFSNGLRREEVLRKQMELAALVSHSSEAIV 364

Query: 334 FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393
                G + + NP+   +  Y + + I+    L+TLL     + +          +D   
Sbjct: 365 AETPDGRITHWNPAAEAMFGYTADEAIDQ--DLTTLLSPQPYAMSEVD------HADAAL 416

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK------- 446
              ++   T++    + + +                 +    +  D   + ++       
Sbjct: 417 AGNASAAQTMRHRDGHQVHVLASKAPIIESEGTLSGHSHFFRDISDRVRSHQRIIDLNAS 476

Query: 447 MEIEVMQ-----------LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
           +E +V +             +IL      I   +  G +   N A  KL GY   +++ +
Sbjct: 477 LEHQVAERTSELVKFSVLQRAILAHAGYAIIATDSGGFVTLFNPAAEKLLGYSAAEVIGR 536

Query: 496 P-FTVFLEQNTPSVMNHYLTEILSLDLRQTLEK-------------ITLGSTKEEKLLSL 541
              + F+E        H L E     +  TLE                   + + + L +
Sbjct: 537 RKASQFVEPEELQERAHMLAEQTGTPVAHTLEAIAALTSLGRSDTSEWTYVSHDGRRLPV 596

Query: 542 RIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
            + +  L         Y     D++E K  + +L  A   A+  +  KSDFLA +SHEIR
Sbjct: 597 LLTLSTLRDDHDQVIGYLGVAVDLTEQKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIR 656

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TP+ AI+G   +++             +    IDRS   +L+I+ND+LD SKIE+G+++L
Sbjct: 657 TPMNAILGMLYLLQRSELPGAA----QDMVAKIDRSARTLLEIINDILDFSKIEAGRIDL 712

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTS-FANNIPRILADLRSVKQIALNILSNAI 716
              P  L++       L++   + K + +       +   +L D   + Q+ +N++ NAI
Sbjct: 713 ECAPFDLNQLFDNIADLMRSSLSAKPVEMIVEPLPRDSRWLLGDALRINQVLVNLVGNAI 772

Query: 717 HFTPSGGQIIISTTHTSNEE-----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
            FT  G ++++S     + +     ++  VRDTG+G++  +      PF Q   S   R 
Sbjct: 773 KFTEQG-EVVLSVRRFPSGDPNKFKLLFSVRDTGIGISKEKQSVIFSPFLQADTSTSRRY 831

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
            G+GLGL +++ +V+   G+  + S P +G+    +  L  +S P 
Sbjct: 832 GGSGLGLTISRRLVELMGGELEVESVPGRGSEFYFVVTLEKSSPPQ 877



 Score = 85.8 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 52/442 (11%), Positives = 126/442 (28%), Gaps = 55/442 (12%)

Query: 169 YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228
               REF G  G+G +H  RV     A   +  +        ++  +  + E+Y +   +
Sbjct: 99  RDYPREFPGVLGYGYIH--RVAPADEAAFLQAARADGAPDIHRRPLAPWDGERYMVLYFE 156

Query: 229 SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288
                 R      +                 P++TS  S    +    +  L      + 
Sbjct: 157 PESSGNRPLGIDIASEPRRRAAALQAARSGAPVMTSPISLSGYRVPNESGFLVLLAVYRE 216

Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSF 348
              LQ   +                                    +VY+  ++     S 
Sbjct: 217 GMPLQTPQQRMLATSG-----------------------------WVYAPFSVEQMVRSA 247

Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
           L      ++D  +          +   + ++A++P ++       +    R   I  +  
Sbjct: 248 LGERDDVALDLSDRNEPTHNFYRSGTPASDSALRPPVVR-----LLPIYGRTWVITAHPT 302

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDV----DTRINKRKMEIEVMQLCSILEATSDG 464
                +             M  + +    +       + + ++  + M+L +++  +S+ 
Sbjct: 303 AGFVASLNQSSPWLIGGLVMAASVLFAALLVLYFSNGLRREEVLRKQMELAALVSHSSEA 362

Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
           I     +G I   N A   +FGY  ++ + +  T  L           +    +      
Sbjct: 363 IVAETPDGRITHWNPAAEAMFGYTADEAIDQDLTTLLSP--QPYAMSEVDHADAALAGNA 420

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEK 580
               T+   ++   + +      +  S            DIS+  +   ++       E 
Sbjct: 421 SAAQTM-RHRDGHQVHVLASKAPIIESEGTLSGHSHFFRDISDRVRSHQRIIDLNASLEH 479

Query: 581 ESSHKSDFL--------ARVSH 594
           + + ++  L        A ++H
Sbjct: 480 QVAERTSELVKFSVLQRAILAH 501



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/283 (9%), Positives = 68/283 (24%), Gaps = 23/283 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMR----------LCDVSDILHIDPNNHIGDLLK 138
            D+ G++   +    K +G  A ++IG R          L + + +L       +   L+
Sbjct: 509 TDSGGFVTLFNPAAEKLLGYSAAEVIGRRKASQFVEPEELQERAHMLAEQTGTPVAHTLE 568

Query: 139 RQNTW----YGKTTLW-PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193
                       T+ W  +      +P+ L    +   + +  G+ G  +          
Sbjct: 569 AIAALTSLGRSDTSEWTYVSHDGRRLPVLLTLSTLRDDHDQVIGYLGVAV--DLTEQKLH 626

Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253
               +         ++ K    +    +              ++                
Sbjct: 627 EKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSELPGAAQDMVAKID 686

Query: 254 LKTEKYPLLTSEESSLPEQEDFH------TINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
                   + ++     + E           +LNQ           + S +  E +    
Sbjct: 687 RSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQLFDNIADLMRSSLSAKPVEMIVEPL 746

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLL 350
                    +   +    V+           G +  +   F  
Sbjct: 747 PRDSRWLLGDALRINQVLVNLVGNAIKFTEQGEVVLSVRRFPS 789



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/375 (8%), Positives = 81/375 (21%), Gaps = 12/375 (3%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150
             G +   +       G  A + I   L  +        +                 T+ 
Sbjct: 368 PDGRITHWNPAAEAMFGYTADEAIDQDLTTLLSPQPYAMSEVDHADAALAGNASAAQTMR 427

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
             +G  ++  +  +  PI       SG   F                  L+    H  ++
Sbjct: 428 HRDGHQVH--VLASKAPIIESEGTLSGHSHF--FRDISDRVRSHQRIIDLNASLEH--QV 481

Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270
            +  S + K      +  +   +  +          +    + L       +     +  
Sbjct: 482 AERTSELVKFSVLQRAILAHAGYAIIATDSGGFVTLFNPAAEKLLGYSAAEVIGRRKASQ 541

Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330
             E            +Q    + +  +      S     +    +   +      +    
Sbjct: 542 FVEPEELQERAHMLAEQTGTPVAHTLEAIAALTSLGRSDTSEWTYVSHDGRRLPVLLTLS 601

Query: 331 IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390
                  H  +       + LT+ K  +        +        SD  A     +    
Sbjct: 602 T--LRDDHDQVIGYLGVAVDLTEQKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIRTPM 659

Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450
              +     L   +        +  I           +       +       +  +E  
Sbjct: 660 NAILGMLYLLQRSELPGAAQDMVAKID----RSARTLLEIINDILDFSKIEAGRIDLECA 715

Query: 451 VMQLCSILEATSDGI 465
              L  + +  +D +
Sbjct: 716 PFDLNQLFDNIADLM 730


>gi|242280762|ref|YP_002992891.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens DSM
            2638]
 gi|242123656|gb|ACS81352.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens DSM
            2638]
          Length = 1670

 Score =  367 bits (942), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 117/668 (17%), Positives = 242/668 (36%), Gaps = 50/668 (7%)

Query: 178  FRGFGIVHV--NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP---P 232
            + GF +  +       +     K  + K+  + +       +    Y  FS         
Sbjct: 508  YVGFALERLYLMEQGRNKNEALKEREIKYRSIFDNASDAILLMDLNYKFFSANPEAVSMF 567

Query: 233  HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE-------ESSLPEQEDFHTINLN--QY 283
                + ++ S         +  + E    L  E          L         +      
Sbjct: 568  RCGSEEELLSYRPENLVAPNQREGESSSDLLDEWVGKTIDAGGLDFDLICRRSDGEEFYA 627

Query: 284  TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLF 342
            + +     +                       +   +L   T++            G + 
Sbjct: 628  SVRARKMVISGTPFIQATLRDVTEKRRSKEEIERSVSLLTATIESSADGILAVDGYGQVV 687

Query: 343  YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT 402
              N  F  +      + I  +G +S +     ++D       +    D +  + + ++  
Sbjct: 688  AWNSRFSSMWNIT--EHILRSGVVSDVFG--YIADQLEEGSSVHGLWDYSLESEAGQIEE 743

Query: 403  IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
            +       +     P    +   + + +     +    R+++ ++     +L  I+E   
Sbjct: 744  LILVDGRIVEKYSNPQRIGS---DIVGRVWSFRDVTRKRLSENELRDSYQRLNDIIEFLP 800

Query: 463  DGIAIINREGIILSTNRAVSKLFGYPVEDILRK-PFTVFLEQNTPSVMNHYLTEILSLDL 521
            D   +I+  G++L+ N+AV ++ G   +D++ K  +   L            + +     
Sbjct: 801  DPTIVIDSNGVVLAWNKAVEEVTGVSKQDMIGKADYEYALPFYGERRPILIDSALKDDLE 860

Query: 522  RQTLEKITLGST---------------KEEKLLSLRIIIKKLPFSSCYSLT--MHDISEW 564
              T    +L                   +           +            M +++E 
Sbjct: 861  PLTDRYESLERRYGMLYGEVYTPRAFNGQGAYFWGVAGPLRDHSGKVVGAVECMRNVTER 920

Query: 565  KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
            ++ + +L+ A+  AE  +  KS+FLA +SHEIRTP+ +IIGF  ++++            
Sbjct: 921  RRVEQELNRARLAAEAATRAKSEFLANMSHEIRTPMNSIIGFGHLMQSADLDSA----QR 976

Query: 625  EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
            EY N +  S + +L I+ D+LD SKIE+GK  L      LD  + +  ++V + A  K I
Sbjct: 977  EYLNKMMSSADSLLSIIGDILDFSKIEAGKFVLEAVEFQLDHVLEKICNMVSVKAESKGI 1036

Query: 685  LIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN----EEVIL 739
                S   ++P  +  D   ++Q+  N+++NA+ FT  G ++ +  T   N      +  
Sbjct: 1037 DFILSVGPDVPLFLRGDPLRLEQVLTNLVNNAVKFTDRG-EVNLIVTCEENCTGEASIKF 1095

Query: 740  RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
             VRD+G+G+++ E+      F Q   S   +  GTGLGL +A+++V+   G   + S P 
Sbjct: 1096 IVRDSGIGLSSEEVSVLFNSFTQADASTTRKYGGTGLGLAIARSLVELMGGTVSVESHPG 1155

Query: 800  KGTLIEII 807
            +G+     
Sbjct: 1156 EGSSFYFT 1163



 Score = 46.9 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 16/155 (10%), Positives = 36/155 (23%), Gaps = 17/155 (10%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL---------------HIDPNNHI 133
           ID++G +   ++ + +  G     MIG    + +                   ++P    
Sbjct: 806 IDSNGVVLAWNKAVEEVTGVSKQDMIGKADYEYALPFYGERRPILIDSALKDDLEPLTDR 865

Query: 134 GDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193
            + L+R+          P             A P+   + +  G      +         
Sbjct: 866 YESLERRYGMLYGEVYTPRAFNGQGAYFWGVAGPLRDHSGKVVGAVEC--MRNVTERRRV 923

Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228
                R           K    +    +       
Sbjct: 924 EQELNRARLAAEAATRAKSEFLANMSHEIRTPMNS 958


>gi|153870479|ref|ZP_01999873.1| Signal transduction histidine kinase [Beggiatoa sp. PS]
 gi|152073056|gb|EDN70128.1| Signal transduction histidine kinase [Beggiatoa sp. PS]
          Length = 660

 Score =  367 bits (942), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 103/425 (24%), Positives = 186/425 (43%), Gaps = 22/425 (5%)

Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
                           +                   ++ +    +  + ++     +   
Sbjct: 218 EMTERQKTEQELRKYRIQLEEKVAERTAELAQLNVQLQQDIAKRKQVEEELR----KFSR 273

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
            +E +++ I I + +G I   N A S+  GY   +++ K          P      L + 
Sbjct: 274 AVEQSANTIIITDLKGDIQFVNPAFSRQTGYAYHEVIGKNLRFLKSGKYPPAFYKKLWDT 333

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLS 572
           + L   +  +   L   K  +L      I  +   +     Y     DI+E K+ + +L 
Sbjct: 334 IKLG--RVWQGEVLNQHKNGELFWNFTTISPIKDQNGQTTHYLAISRDITERKRAEAELF 391

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
            +K++AE  +  K+ FL  +SHE+RTPLTAI+G+++++K  +          E    I R
Sbjct: 392 KSKELAESANQAKTAFLTNMSHELRTPLTAILGYAQLLKQDKR---LTDEQREGIQIIYR 448

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
           SG  +L +++D+LD+SKIE+GK+ L      L     + + L  +   +K I +     +
Sbjct: 449 SGEHLLTLISDILDLSKIEAGKLELVPSDFHLPTLFQDIVELFGIRFEQKGIELVYEPLS 508

Query: 693 NIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS------NEEVILRVRDTG 745
            +PR   AD + ++QI LN++SNAI FT +G Q+ +   +T         ++ + V D+G
Sbjct: 509 ELPRAAHADRKRLRQILLNLVSNAIKFTETG-QVSLKVQYTPIPDNKNQGKMRVDVEDSG 567

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+    LEK   PF Q+ N      EGTGLGL + K +V+   G+  + S   +G+   
Sbjct: 568 IGIAAAHLEKIFLPFQQVGNKM-YYSEGTGLGLSITKTLVEMMGGQLQVKSRLGRGSHFW 626

Query: 806 IIFPL 810
              P+
Sbjct: 627 FEIPI 631



 Score = 61.2 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 26/249 (10%), Positives = 67/249 (26%), Gaps = 13/249 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147
            D  G ++ ++    +  G    ++IG  L  +    +       + D +K    W G+ 
Sbjct: 285 TDLKGDIQFVNPAFSRQTGYAYHEVIGKNLRFLKSGKYPPAFYKKLWDTIKLGRVWQGEV 344

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                 G   +    ++  PI  +N + + +    I           A   +  +     
Sbjct: 345 LNQHKNGELFWNFTTIS--PIKDQNGQTTHY--LAISRDITERKRAEAELFKSKELAESA 400

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
           ++ K    +    +       +   + ++  +   LT+       ++      LLT    
Sbjct: 401 NQAKTAFLTNMSHELRT-PLTAILGYAQLLKQDKRLTDEQREGIQIIYRSGEHLLTLISD 459

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQN-------NSKESFEYLSHRNHPSLSAYFDEGEN 320
            L   +          +        Q+         ++    L +     L         
Sbjct: 460 ILDLSKIEAGKLELVPSDFHLPTLFQDIVELFGIRFEQKGIELVYEPLSELPRAAHADRK 519

Query: 321 LTPETVDKC 329
              + +   
Sbjct: 520 RLRQILLNL 528



 Score = 60.0 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/215 (8%), Positives = 44/215 (20%), Gaps = 14/215 (6%)

Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL--SHRNHPS 310
            L      L         E  +           +                L    +   +
Sbjct: 200 ALNMSHAALTKINGQLQQEMTERQKTEQELRKYRIQLEEKVAERTAELAQLNVQLQQDIA 259

Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
                +E        V++      +    G++ + NP+F   T Y   + I    G +  
Sbjct: 260 KRKQVEEELRKFSRAVEQSANTIIITDLKGDIQFVNPAFSRQTGYAYHEVI----GKNLR 315

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
                       K +                                     +Q  +   
Sbjct: 316 FLKSGKYPPAFYKKLWDTIKLGRVWQGEVLNQ---HKNGELFWNFTTISPIKDQNGQTTH 372

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
              I  +  + +  + ++         + E+ +  
Sbjct: 373 YLAISRDITERKRAEAELFKSKE----LAESANQA 403


>gi|16124905|ref|NP_419469.1| sensory box histidine kinase/response regulator [Caulobacter
           crescentus CB15]
 gi|221233626|ref|YP_002516062.1| PAS-family hybrid histidine kinase/receiver protein [Caulobacter
           crescentus NA1000]
 gi|13421867|gb|AAK22637.1| sensory box histidine kinase/response regulator [Caulobacter
           crescentus CB15]
 gi|220962798|gb|ACL94154.1| PAS-family hybrid histidine kinase/receiver protein [Caulobacter
           crescentus NA1000]
          Length = 776

 Score =  367 bits (942), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 119/649 (18%), Positives = 250/649 (38%), Gaps = 26/649 (4%)

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244
                     A  + L ++     ++   H     + Y   + +        +   +   
Sbjct: 7   QDIDALRASEAFFRLLTEQAG---DVISRHRLSGTDHYVSPAVERMMGWTAEEMLEAGFK 63

Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
            +Y   D     + Y  + +       +      +      + +   +++ +    E ++
Sbjct: 64  AFYHPDDTPAVYDVYNRMRAGVEHCSVRYRGRRKDGRYVWLESHLTLVRDEAGAPSELIA 123

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIP---------FFVYSHGNL---FYANPSFLLLT 352
                      ++    T E + +                +    +    Y +P F  L 
Sbjct: 124 VTRDIDERVQLEDEARHTREAMRETQQRAMLAEQVAQVAFWRVDLITNEVYLSPRFRELY 183

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
            +   + I +   LS         ++  +    +    RT   +  R+  I         
Sbjct: 184 GWTQDEPISLGEVLSRF-----HPEDRPVARARVAEHLRTGEPSRNRMDRIIRLDGAVRH 238

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG 472
           +        +     +  +G   +  D    ++ +     +   + +AT D +  ++R G
Sbjct: 239 IVGSFEFDFDDNGRPIAMSGTTVDVTDLVAAQQSLAKTESRFQDLAKATRDIVIEVDRRG 298

Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
            IL  + AV  + GY   ++L +        N    +      +L+              
Sbjct: 299 NILFVSAAVEPVLGYAEGELLGRKAAKLTHPNDLPGLVQAFGAVLADPEGLPPVLEARAL 358

Query: 533 TKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
            K+   + L+        +      + DI+E+K+ +++L+  +  AE+    +S FLA +
Sbjct: 359 HKDGHWVWLQGRPVLNRTAGRIEGVIQDITEYKRARDELAAEQARAEQALEARSAFLANM 418

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHE+RTPLTA+IGF+ +++     P       +Y   I  +G  +L ++ND+L++SK+E+
Sbjct: 419 SHELRTPLTAVIGFAALVEGLDDLP---ETARDYVGRISTAGKALLSVINDVLEMSKLET 475

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNI 711
           G++  H  P +L   + + + +  L+A EK + I     +  PR+ + D   V+Q+ +N+
Sbjct: 476 GQVQAHLAPCALAPLIDDTVRMFGLHAAEKNLQIAVRMVDPPPRVLMIDPDRVRQVLINL 535

Query: 712 LSNAIHFTPSGGQIIISTTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           + NAI +T +G  I +        EE+ + V+DTG+G+   +     K F QI +++   
Sbjct: 536 IGNAIRYTDAGS-ITLEVIWRGELEELFVAVKDTGIGIDPADQAHLFKRFSQIESARARS 594

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819
             G+GLGL ++K +V+A  G+    S P +G+      P        D 
Sbjct: 595 RGGSGLGLVISKGLVEAMGGRIGASSKPGEGSTFWFAIPASGPLRDEDA 643



 Score = 78.5 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 26/370 (7%), Positives = 81/370 (21%), Gaps = 32/370 (8%)

Query: 97  EISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL-WPIEGT 155
            +S  + + +G  A +M+                  + + ++               +G 
Sbjct: 41  YVSPAVERMMGWTAEEMLEAGFKAFYHPDDTPAVYDVYNRMRAGVEHCSVRYRGRRKDGR 100

Query: 156 NLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH------LHE 209
             YV ++     +       S      +              +   +          L E
Sbjct: 101 --YVWLESHLTLVRDEAGAPSEL--IAVTRDIDERVQLEDEARHTREAMRETQQRAMLAE 156

Query: 210 IKKGHSS-----VEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV--LKTEKYPLL 262
                +      +  E Y     +      + +           H +D    +      L
Sbjct: 157 QVAQVAFWRVDLITNEVYLSPRFRELYGWTQDEPISLGEVLSRFHPEDRPVARARVAEHL 216

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
            + E S    +    ++         F    +++             +      +    T
Sbjct: 217 RTGEPSRNRMDRIIRLDGAVRHIVGSFEFDFDDNGRPIAMSGTTVDVTDLVAAQQSLAKT 276

Query: 323 PETVDKCPIP-----FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
                            V   GN+ + + +   +  Y   + +                 
Sbjct: 277 ESRFQDLAKATRDIVIEVDRRGNILFVSAAVEPVLGYAEGELLGRKAAK----LTHPNDL 332

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
              ++      +D   +        +  +    + +   P              G+  + 
Sbjct: 333 PGLVQAFGAVLADPEGLPPVLEARALHKDGH-WVWLQGRPVLNR----TAGRIEGVIQDI 387

Query: 438 VDTRINKRKM 447
            + +  + ++
Sbjct: 388 TEYKRARDEL 397



 Score = 51.2 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 35/405 (8%), Positives = 94/405 (23%), Gaps = 34/405 (8%)

Query: 49  FEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVR-FTWNIDAHGYLKEISEELPKTIG 107
               + T  +   +       ++    F  + +  R     +D  G +  +S  +   +G
Sbjct: 253 PIAMSGTTVDVTDLVAAQQSLAKTESRFQDLAKATRDIVIEVDRRGNILFVSAAVEPVLG 312

Query: 108 NYAFKMIGMRLCDVSDILHIDP-NNHIGDLLK--RQNTWYGKTTLWPIEGTNLYVPIDLA 164
               +++G +   ++    +       G +L          +      +G      + L 
Sbjct: 313 YAEGELLGRKAAKLTHPNDLPGLVQAFGAVLADPEGLPPVLEARALHKDG----HWVWLQ 368

Query: 165 ALPIYSR-NREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYD 223
             P+ +R      G     ++         R        +     E +    +    +  
Sbjct: 369 GRPVLNRTAGRIEG-----VIQDITEYKRARDELAAEQARAEQALEARSAFLANMSHELR 423

Query: 224 IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY 283
                       ++           +   +    K  L    +     + +   +    +
Sbjct: 424 TPLTAVIGFAALVEGLDDLPETARDYVGRISTAGKALLSVINDVLEMSKLETGQVQA--H 481

Query: 284 TKKQYFGTLQNNSKESFEYLSHRN---------HPSLSAYFDEGENLTPETVDKCPIPFF 334
                   L +++   F   +             P       + + +    ++       
Sbjct: 482 LAPCALAPLIDDTVRMFGLHAAEKNLQIAVRMVDPPPRVLMIDPDRVRQVLINLIGNAIR 541

Query: 335 VYSHGNL---FYANPSFLLLTKYKSVDDIE-IAGGLSTLL-----DAPKLSDNNAIKPVM 385
               G++            L        I       + L           + +     + 
Sbjct: 542 YTDAGSITLEVIWRGELEELFVAVKDTGIGIDPADQAHLFKRFSQIESARARSRGGSGLG 601

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
           L  S     A   R+       E S     IP     +  +  P+
Sbjct: 602 LVISKGLVEAMGGRIGASSKPGEGSTFWFAIPASGPLRDEDAGPE 646


>gi|88812847|ref|ZP_01128092.1| Signal Transduction Histidine Kinase (STHK) with CheB and CheR
            activity [Nitrococcus mobilis Nb-231]
 gi|88789917|gb|EAR21039.1| Signal Transduction Histidine Kinase (STHK) with CheB and CheR
            activity [Nitrococcus mobilis Nb-231]
          Length = 1656

 Score =  367 bits (942), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 115/773 (14%), Positives = 255/773 (32%), Gaps = 72/773 (9%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK----RQNTWY 144
            +     ++  +E+  + +G  A  + G  +  +   L +DP       L           
Sbjct: 790  LGRDLTVRRFTEQAGEQLGLLASDV-GRPIDHIRHNLVLDPVAGEASSLDLERLADEAIA 848

Query: 145  GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
                +      +      L   P  + + +  G     ++                    
Sbjct: 849  HVREVVREVRDSARRWYSLHIRPYLTLDNKLDGA--VLVLLDIDARKRSELAIAEARDYA 906

Query: 205  SHLHEIKKGHSSVEKEKYDIFSQQSP---PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
             ++ +  +    V  E+               +R    +        ++   +   +  +
Sbjct: 907  ENIIDTVREPLLVLDERLHAERANRAFYRTFGVRRTETLGRCLYELGNRQWDIPRLRELM 966

Query: 262  LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES-------FEYLSHRNHPSLSAY 314
                  ++P ++        Q  ++      +                            
Sbjct: 967  EQILPQNVPVEDFQVEYGFEQLGRRIMLLNARRIRDPQQQTQRILLAIEDITERRRAETA 1026

Query: 315  FDEGENLTPETVDKCPIPFFV-----YSHG-----NLFYANPSFLLLTKYKSVDDIEIAG 364
              E E       +     + V       +G          N +F   T +     +    
Sbjct: 1027 LRESELRYRTLFESMDQGYCVIEMLFDRNGTPTDYRFVEINAAFEKQTGFS--AALGK-- 1082

Query: 365  GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI-QWNRENSLAMTFIPFEKANQ 423
                + +     + +  +           +  +     + +W    +  +          
Sbjct: 1083 ---RMRELAPAHEAHWFEIYGKVALTGEPVRFTNEAKALARWFDGYAFRL---------G 1130

Query: 424  FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
              ++     +  +  + +      E E  ++ +I+E++ D I   +  GII + N     
Sbjct: 1131 GSKSRRVAVLFTDITERKRA----EEESARIAAIVESSQDAIVSKDLNGIIQTWNAGAQH 1186

Query: 484  LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
            +FGY  ++ + +P  + +  N      + L  I   +  +     T+   K+  L+ + +
Sbjct: 1187 IFGYTAQEAIGQPIGIIIPPNHMDEEPNILERIRRGE--RVDHYETVRQRKDGTLVDISL 1244

Query: 544  IIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
             +  +  +            DI+E K+ + ++    K   + S  K +FLA ++HE+R P
Sbjct: 1245 TVSPILDARGRVSRASKIARDITERKRMERQIQGQAKELAEVSRRKDEFLAMLAHELRNP 1304

Query: 600  LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
            L  I    + +  Q+     +    E    I+R    +  +++DLLD+S+I SG++ L  
Sbjct: 1305 LAPIFNALQ-LIGQKGENALHEEARE---IIERQVRHMARLIDDLLDVSRITSGRIRLRP 1360

Query: 660  EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719
            E V L+  V  A+  ++   + +   +    A     + AD   ++QI  N+L NA  ++
Sbjct: 1361 ERVDLNTIVERAVERMRPLIDRRGQQLSIEPAQQPIWLDADPTRLEQIFGNLLDNASKYS 1420

Query: 720  PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
             + G I +      +  +  RVRD G G+    L +  + FGQ   S +    G G+GL 
Sbjct: 1421 TNNGHIDLRIERDDHRAIS-RVRDDGEGIAADTLPRIFELFGQAERSLERSEGGLGIGLA 1479

Query: 780  LAKAMVDANMGKFYIFST-PAKGTLIEIIFPLY------------DTSHPHDC 819
            L K++V+ + G    +S     G+   +  P+              T+ P DC
Sbjct: 1480 LVKSLVEMHGGTVDAYSEGLGHGSEFVVRLPVASSQARPADTTGPRTAAPQDC 1532



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 42/406 (10%), Positives = 115/406 (28%), Gaps = 11/406 (2%)

Query: 186  VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE 245
              R  N      K L ++   +     G             + +  P      +++ L  
Sbjct: 645  EIRRVNVEVIPLKNLRERCLLILFEDAGAGERLPLPDRQSPRGARLPRDEAAKRIAELET 704

Query: 246  YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
              A   D L++ +     + E      E+  +IN    T K+   +         E +++
Sbjct: 705  ELAETRDYLQSMQEWHEAANEEVQSANEELQSINEELETSKEELESSNEELATVNEEMAN 764

Query: 306  RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365
            RN        D     T   +        +     +              + D       
Sbjct: 765  RNTELNRLNNDLANLQTSTGL----AIVLLGRDLTVRRFTEQAGEQLGLLASDVGRPIDH 820

Query: 366  LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
            +   L    ++   +   +    +D         +  ++ +     ++   P+   +   
Sbjct: 821  IRHNLVLDPVAGEASSLDLE-RLADEAIAHVREVVREVRDSARRWYSLHIRPYLTLDNKL 879

Query: 426  ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
            +      +  +    + ++  +        +I++   + + +++        NRA  + F
Sbjct: 880  D--GAVLVLLDIDARKRSELAIAEARDYAENIIDTVREPLLVLDERLHAERANRAFYRTF 937

Query: 486  GYPVEDILRKPFTVF-LEQNTPSVMNHYLTEILSLDLR-QTLEKITLGSTKEEKLLSLRI 543
            G    + L +        Q     +   + +IL  ++  +  +          +++ L  
Sbjct: 938  GVRRTETLGRCLYELGNRQWDIPRLRELMEQILPQNVPVEDFQVEYGFEQLGRRIMLLNA 997

Query: 544  IIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
               + P        L + DI+E ++ +  L  ++            
Sbjct: 998  RRIRDPQQQTQRILLAIEDITERRRAETALRESELRYRTLFESMDQ 1043


>gi|283851963|ref|ZP_06369239.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283572687|gb|EFC20671.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 1139

 Score =  367 bits (941), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 111/555 (20%), Positives = 219/555 (39%), Gaps = 33/555 (5%)

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
                  +    +      ++      Q    E    L             E    T + 
Sbjct: 310 GPIQRLVQMAAAMAGGDLARRSGLADGQGELAELGRALDAMAD-----RLGERVRFTQDI 364

Query: 326 VDKCPI-PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
           +D  P    F    G     N ++          +I       T  ++P  ++   I   
Sbjct: 365 IDAIPARIVFKGLDGRYLGCNRAYAR--DIHPQAEILGKTCRET--ESPAQAERIEISDA 420

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
            L R+    +          +   +   M  +     +          +  +  D + ++
Sbjct: 421 ELLRNPEQTMEMEIESA---FRDGSLHDMMVLKSVFKDASGRPAGIVNVALDITDRKRSE 477

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           + +     +  ++L +  DG  +++  G I+ +N A  ++ GY  +++ R  +     ++
Sbjct: 478 KALLASETKYRALLASIRDGFVVVDDNGRIMESNPAFREMVGYSRDELGRLTYKDLTPES 537

Query: 505 TPSVMNHYLTEILSL-DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMH 559
                   L   +         EK      ++  ++ + + + + P  +     Y   + 
Sbjct: 538 WHETEETILRTAVDTCGFSDVFEKE--YRRRDGSVVPVALRLHRYPSRAGENYRYFAIVR 595

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           DI++ K  +  L  AK+ AE  +  KSDFLA++SH+IRTPL A+IG +E+      G L 
Sbjct: 596 DITDVKAIEADLRQAKETAETANRAKSDFLAKMSHDIRTPLHAVIGMTEL----TLGTLL 651

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
           + +  +    +  S   +L ++ND+LDIS+IE+ K+++  E   L   ++  +  ++  A
Sbjct: 652 SAQQRDALETVRESAASLLALINDILDISRIEARKLDVAREDFDLRRTLAATVRAMRPQA 711

Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-- 736
            +K + +  + A  +PR +  D   V+QI  N++ NA+ FT  GG + +S    +  +  
Sbjct: 712 AQKALFLGLAIAPAVPRFVTGDEVRVRQILTNLIGNALKFTDQGG-VTVSVAPMAGPDAP 770

Query: 737 -----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
                +   V DTGVG+ + +L    + F Q   S      GTGLGL + + +     G 
Sbjct: 771 GDPLFLEFTVADTGVGIPSDKLASIFEMFTQANASVGKHYGGTGLGLAICRELARLMGGG 830

Query: 792 FYIFSTPAKGTLIEI 806
               STP +G+   +
Sbjct: 831 IRTESTPGRGSTFRV 845



 Score = 65.8 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/248 (9%), Positives = 67/248 (27%), Gaps = 11/248 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD-LLKRQN-TWYGK 146
           +D +G + E +    + +G    ++  +   D++     +    I    +     +   +
Sbjct: 501 VDDNGRIMESNPAFREMVGYSRDELGRLTYKDLTPESWHETEETILRTAVDTCGFSDVFE 560

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                 +G+ + V + L   P    +R    +R F IV          A  ++  +    
Sbjct: 561 KEYRRRDGSVVPVALRLHRYP----SRAGENYRYFAIVRDITDVKAIEADLRQAKETAET 616

Query: 207 LHEIKKGHSSVEKEKYD-----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
            +  K    +            +           +  +     E        L      +
Sbjct: 617 ANRAKSDFLAKMSHDIRTPLHAVIGMTELTLGTLLSAQQRDALETVRESAASLLALINDI 676

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
           L        + +        + T       ++  + +   +L     P++  +    E  
Sbjct: 677 LDISRIEARKLDVAREDFDLRRTLAATVRAMRPQAAQKALFLGLAIAPAVPRFVTGDEVR 736

Query: 322 TPETVDKC 329
             + +   
Sbjct: 737 VRQILTNL 744


>gi|32474842|ref|NP_867836.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
 gi|32445382|emb|CAD75383.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
          Length = 865

 Score =  367 bits (941), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 117/617 (18%), Positives = 242/617 (39%), Gaps = 32/617 (5%)

Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271
               +   E+Y   +        R  +++   T      DD  ++ K  L  +       
Sbjct: 88  SIAIADTNERYVSANAVYAQQFHRSPSELLGGTIREMVGDDNYQSMKPHLDRAFSGEQST 147

Query: 272 QEDFHTINLNQYTKKQY-----FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
           Q           T +Q             +      +   +     +   E    +   +
Sbjct: 148 QSVAEATTDGVTTYRQVSYDPQLSADGQVTGVMIVAMDITDSKRRESDLRESNEFSRAIL 207

Query: 327 DKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
           +  P     +   G+L   N   + L +   ++        S     P+ +     K + 
Sbjct: 208 ESSPDCVKVLNEEGDLMSMNAKGMCLMEIDDLEPFRNQAWWSY---WPEQAQGTVRKSLK 264

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
             R +       A   T++           I         E      +  +    R++K+
Sbjct: 265 DARENGEGR-FEAECPTVK---GTPKWWDVIVTPVRRNSGEVKQFVAVSRDVTTRRLHKQ 320

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           ++E    +L  +++  +  + I++ +G++   N+          ED++ +PF      + 
Sbjct: 321 ELEEREKRLHRVIDNMNSFVGIVDLDGVLQEVNQTAIDAASVAREDVIGRPFCEAFWWSH 380

Query: 506 PSVMNHYLTEILSLDLR-QTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---------YS 555
              +   +   +   +R +T           +    + +    +   S            
Sbjct: 381 DDQVAEQVKSSVQAAIRGETSRFDIAYRIAGDSSRMVDVSFVPVRDESGRDESGPPLYVV 440

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
            +  D+++  + +  L  A   AE+ +  KS FLA +SHEIRTP+T+I+G++++I  ++ 
Sbjct: 441 ASGFDVTDRYEFERSLKDATDAAEQANRAKSQFLANMSHEIRTPMTSILGYADLISQKQI 500

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
               +     +   I R+G  +L ++ND+LD+SKIE+  M +  E V+L   + + +S++
Sbjct: 501 ----DEDTRSHVATIRRNGAFLLGLINDILDLSKIEADHMEVFDESVNLIHLIEDVLSIM 556

Query: 676 QLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
           Q+ A EK + IR  +   IP  I AD + ++QI +N++ NA+ FT +G  + ++     +
Sbjct: 557 QVRAAEKDLEIRVDYCGKIPREIQADSKRLRQILVNLVGNAVKFTEAG-HVRVAVRAEQS 615

Query: 735 EE---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
           +    V   V DTG+G+++  ++K  +PF Q   S      GTGLGL +++ +V    G+
Sbjct: 616 DRRTRVHFDVVDTGIGISDERMKKLFQPFSQGDPSIMRTYGGTGLGLVISQRLVAMLGGE 675

Query: 792 FYIFSTPAKGTLIEIIF 808
               S   +G+      
Sbjct: 676 ITARSRVNEGSCFSFCI 692



 Score = 77.8 bits (190), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 31/431 (7%), Positives = 108/431 (25%), Gaps = 30/431 (6%)

Query: 40  KKENPCHDSFEQSNFTDQNQESVSNTNYLDS------ENTFVFDPIPRTVRFTWNIDAHG 93
           + +   +   ++S    Q        + ++            F+P           D + 
Sbjct: 43  RCDPERYRQSQESLQNSQPNPISIPVSTVNELHSNSLGMAHSFNPSIAIA------DTNE 96

Query: 94  YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPI 152
                +    +       +++G  + ++    +      H+      + +          
Sbjct: 97  RYVSANAVYAQQFHRSPSELLGGTIREMVGDDNYQSMKPHLDRAFSGEQSTQSVAEATTD 156

Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212
             T       ++  P  S + + +G     +           +  +  ++    + E   
Sbjct: 157 GVTTYR---QVSYDPQLSADGQVTGVMIVAM--DITDSKRRESDLRESNEFSRAILESSP 211

Query: 213 GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ 272
               V  E+ D+ S  +    L   + +              + +     + +++    +
Sbjct: 212 DCVKVLNEEGDLMSMNAKGMCLMEIDDLEPFRNQAWWSYWPEQAQGTVRKSLKDARENGE 271

Query: 273 EDFHT----INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA----YFDEGENLTPE 324
             F      +             ++ NS E  ++++     +         +E E     
Sbjct: 272 GRFEAECPTVKGTPKWWDVIVTPVRRNSGEVKQFVAVSRDVTTRRLHKQELEEREKRLHR 331

Query: 325 TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
            +D       +     +        +     + +D+           +        +K  
Sbjct: 332 VIDNMNSFVGIVDLDGVLQEVNQTAIDAASVAREDVIGRPFCEAFWWSHDDQVAEQVKSS 391

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK---ANQFPENMPQNGIEPEDVDTR 441
           +               + I  +    + ++F+P       ++    +       +  D  
Sbjct: 392 VQAAIRGETSRFDI-AYRIAGDSSRMVDVSFVPVRDESGRDESGPPLYVVASGFDVTDRY 450

Query: 442 INKRKMEIEVM 452
             +R ++    
Sbjct: 451 EFERSLKDATD 461



 Score = 48.5 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/135 (11%), Positives = 42/135 (31%), Gaps = 10/135 (7%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR----- 139
           F   +D  G L+E+++            +IG   C+         ++ + + +K      
Sbjct: 339 FVGIVDLDGVLQEVNQTAIDAASVAREDVIGRPFCE---AFWWSHDDQVAEQVKSSVQAA 395

Query: 140 -QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
            +         + I G +  + +D++ +P+   +          +V       D     +
Sbjct: 396 IRGETSRFDIAYRIAGDSSRM-VDVSFVPVRDESGRDESGPPLYVVASGFDVTDRYEFER 454

Query: 199 RLDKKFSHLHEIKKG 213
            L        +  + 
Sbjct: 455 SLKDATDAAEQANRA 469


>gi|315186738|gb|EFU20496.1| multi-sensor hybrid histidine kinase [Spirochaeta thermophila DSM
           6578]
          Length = 1078

 Score =  367 bits (941), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 118/624 (18%), Positives = 216/624 (34%), Gaps = 33/624 (5%)

Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253
            A    L      + +       V      I              ++   T       ++
Sbjct: 194 DARVDVLPAARELIFDAMPDPVIVLDAADRIRFINKAC------ERLVGHTSREVRGKEI 247

Query: 254 LKTEKYPLLT-SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
                  L   S  + + + E      L +         L       F            
Sbjct: 248 DAVFPGGLFPLSLRAHMEQFEIQVGSTLFEVHATWITDALDRRKGTLFHLSDITAEREAV 307

Query: 313 AYFDEGENLTPETVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
                 E      ++   +   + +   +    N          S       G       
Sbjct: 308 NTLALRERQYRNVLENITVGVMLLNRDYVVRAWNRRMEEWFPGIS------WGTEGVRCV 361

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
                     +   L     +     A +       E   +M   P    +         
Sbjct: 362 EICKGPVLPCEECPLPPVFASGKTQRAEVRRQTKYGERIFSMVATPHL--DDEGVIRGVV 419

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
            +  +    R    ++E    +   ++ A++D +++I+ +    + N A  K  G   ED
Sbjct: 420 VLLEDVTAERKATEELE----RYKFMVNASADFMSLISSDFRYEAVNDAFCKAHGKGRED 475

Query: 492 ILRKPFTVFLEQNT-PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
            +         + T    +  Y+      +     ++   G   E + L +     +   
Sbjct: 476 FVGHRVAELWGEETFRRKILPYIQRAFEGERVVVEDRFVFGLLGE-RDLEVSYNPYREGE 534

Query: 551 SSCYSLTM-HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
              +   +  DI+ +K     L  A++ AE+ +  KS FLA +SHEIRTPL AI G S++
Sbjct: 535 RITHVAVVTRDITSYKDALRHLEDARRQAEEANRAKSAFLASMSHEIRTPLNAITGMSDL 594

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           +   R  P       E    I  S   +L ++ND+LD+S+IE+G++ L   P+   + V 
Sbjct: 595 LLLSRVSP----EVEEGLAIIKDSAGTLLALINDILDLSRIEAGRIELERIPLRFPDLVR 650

Query: 670 EAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
               + +  A  K +      +  +P  +  D   ++QI +N+LSNA+ FT  GG + +S
Sbjct: 651 HTWEMFRPQAETKGLSFELHLSEGLPSEVNGDPVRIRQILINLLSNALKFTEEGG-VTLS 709

Query: 729 TT----HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
            T    +  + EV L V DTG+G+   +LE+  +PF Q  +S   R  GTGLGL +++ +
Sbjct: 710 VTGHRMYDRDWEVELVVEDTGIGIPPEKLERIFEPFTQADSSITRRYGGTGLGLSISRQL 769

Query: 785 VDANMGKFYIFSTPAKGTLIEIIF 808
            +   G   + S   +G+      
Sbjct: 770 AEMMGGTVVVSSEVGRGSTFVCRL 793



 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 42/370 (11%), Positives = 99/370 (26%), Gaps = 30/370 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +DA   ++ I++   + +G+ + ++ G  + D      + P +    + + +        
Sbjct: 218 LDAADRIRFINKACERLVGHTSREVRGKEI-DAVFPGGLFPLSLRAHMEQFEIQV----- 271

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                G+ L+   ++ A  I        G   F +  +         L  R  +  + L 
Sbjct: 272 -----GSTLF---EVHATWITDALDRRKGTL-FHLSDITAEREAVNTLALRERQYRNVLE 322

Query: 209 EIKKGHSSVEKEKYDIFSQ---QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
            I  G   + ++          +   P +    +   +      K  VL  E+ PL    
Sbjct: 323 NITVGVMLLNRDYVVRAWNRRMEEWFPGISWGTE--GVRCVEICKGPVLPCEECPLPPVF 380

Query: 266 ESSLPEQ-EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
            S   ++ E        +           ++       +      +      E       
Sbjct: 381 ASGKTQRAEVRRQTKYGERIFSMVATPHLDDEGVIRGVVVLLEDVTAERKATEELERYKF 440

Query: 325 TVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
            V+        + S       N +F         D +     ++ L             P
Sbjct: 441 MVNASADFMSLISSDFRYEAVNDAFCKAHGKGREDFVGHR--VAELWGEETFRRKIL--P 496

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
            +    +   +    R        E  L +++ P     +         +  +    +  
Sbjct: 497 YIQRAFEGERVVVEDR-FVFGLLGERDLEVSYNP---YREGERITHVAVVTRDITSYKDA 552

Query: 444 KRKMEIEVMQ 453
            R +E    Q
Sbjct: 553 LRHLEDARRQ 562



 Score = 43.9 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 22/251 (8%), Positives = 72/251 (28%), Gaps = 14/251 (5%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNT 142
           F   I +    + +++   K  G      +G R+ ++            +I    + +  
Sbjct: 448 FMSLISSDFRYEAVNDAFCKAHGKGREDFVGHRVAELWGEETFRRKILPYIQRAFEGERV 507

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
                 ++ + G      ++++  P     R  +      +        D     +   +
Sbjct: 508 VVEDRFVFGLLGE---RDLEVSYNPYREGER-ITHVA--VVTRDITSYKDALRHLEDARR 561

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
           +    +  K    +           ++P   +   + +  L+      ++ L   K    
Sbjct: 562 QAEEANRAKSAFLASMSH-----EIRTPLNAITGMSDLLLLSRVSPEVEEGLAIIK-DSA 615

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
            +  + + +  D   I   +   ++      +  + ++E    +      ++        
Sbjct: 616 GTLLALINDILDLSRIEAGRIELERIPLRFPDLVRHTWEMFRPQAETKGLSFELHLSEGL 675

Query: 323 PETVDKCPIPF 333
           P  V+  P+  
Sbjct: 676 PSEVNGDPVRI 686


>gi|327539948|gb|EGF26547.1| sensory transduction histidine kinase [Rhodopirellula baltica WH47]
          Length = 856

 Score =  367 bits (941), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 115/617 (18%), Positives = 240/617 (38%), Gaps = 32/617 (5%)

Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271
               +   E+Y   +        R  +++   T      DD  ++ K  L  +       
Sbjct: 79  SIAIADTNERYVSANAVYAQQFHRSPSELLGCTIREMVGDDHYQSMKPHLDRAFSGEQST 138

Query: 272 QEDFHTINLNQYTKKQY-----FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
           Q           T +Q             +      +   +     +   E    +   +
Sbjct: 139 QSVAEATTDAVTTYRQVSYDPQLSADGQVTGVMIVAMDITDSKRRESDLRESNEFSRAIL 198

Query: 327 DKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
           +  P     +   G+L   N   + L +   ++        S     P+ +     K + 
Sbjct: 199 ESSPDCVKVLNEEGDLMSMNAKGMCLMEIDDLEPFRNQAWWSY---WPEQAQGTVRKSLK 255

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
             R +       A   T++           I         E      +  +    R++K+
Sbjct: 256 DARENGEGR-FEAECPTVK---GTPKWWDVIVTPVRRNSGEVKQFVAVSRDVTARRLHKQ 311

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           ++E    +L  +++  +  + I++ +G++   N+          ED++ +PF      + 
Sbjct: 312 ELEEREKRLHRVIDNMNSFVGIVDLDGVLQEINQTAINAASVAREDVIGRPFWEAFWWSH 371

Query: 506 PSVMNHYLTEILSLDLR-QTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---------YS 555
              +   +   +   +R +T           +    + +    +   S            
Sbjct: 372 DDQVAEQVKSSVQAAIRGETSRFDIAYRIAGDSSRMVDVSFVPVRDESGRDESGPPLYVV 431

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
            +  D+++  + +  L  A   A++ +  KS FLA +SHEIRTP+T+I+G++++I  ++ 
Sbjct: 432 ASGFDVTDRYEFERSLKDATDAADQANRAKSQFLANMSHEIRTPMTSILGYADLISQKQI 491

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
               +     +   I R+G  +L ++ND+LD+SKIE+ +M +  E V+L   + + + ++
Sbjct: 492 ----DEDTRSHVATIRRNGAFLLGLINDILDLSKIEADRMEVFDESVNLIHLIEDVLRIM 547

Query: 676 QLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS- 733
           Q+ A EK + IR  +   IP  I AD + ++QI +N++ NA+ FT +G  + ++      
Sbjct: 548 QVRAAEKDLEIRVDYCGKIPREIQADSKRLRQILVNLVGNAVKFTEAG-HVRVAVRAEQI 606

Query: 734 --NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
                V   V DTG+G+++  ++K  +PF Q   S      GTGLGL +++ +V    G+
Sbjct: 607 DLRTRVHFDVVDTGIGISDERMKKLFQPFSQGDPSIMRTYGGTGLGLVISQRLVAMLGGE 666

Query: 792 FYIFSTPAKGTLIEIIF 808
               S   +G+      
Sbjct: 667 ITARSRVNEGSCFSFCI 683



 Score = 74.7 bits (182), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 36/415 (8%), Positives = 105/415 (25%), Gaps = 26/415 (6%)

Query: 51  QSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYA 110
           Q N       +V+  +         F+P           D +      +    +      
Sbjct: 51  QLNLISIPVSTVNELHSNSLGMAHSFNPSIAIA------DTNERYVSANAVYAQQFHRSP 104

Query: 111 FKMIGMRLCD-VSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIY 169
            +++G  + + V D  +     H+      + +            T       ++  P  
Sbjct: 105 SELLGCTIREMVGDDHYQSMKPHLDRAFSGEQSTQSVAEATTDAVTTYR---QVSYDPQL 161

Query: 170 SRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS 229
           S + + +G     +           +  +  ++    + E       V  E+ D+ S  +
Sbjct: 162 SADGQVTGVMIVAM--DITDSKRRESDLRESNEFSRAILESSPDCVKVLNEEGDLMSMNA 219

Query: 230 PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHT----INLNQYTK 285
               L   + +              + +     + +++    +  F      +       
Sbjct: 220 KGMCLMEIDDLEPFRNQAWWSYWPEQAQGTVRKSLKDARENGEGRFEAECPTVKGTPKWW 279

Query: 286 KQYFGTLQNNSKESFEYLSHRNHPSLSA----YFDEGENLTPETVDKCPIPFFVYSHGNL 341
                 ++ NS E  ++++     +         +E E      +D       +     +
Sbjct: 280 DVIVTPVRRNSGEVKQFVAVSRDVTARRLHKQELEEREKRLHRVIDNMNSFVGIVDLDGV 339

Query: 342 FY-ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400
               N + +        D I           +        +K  +               
Sbjct: 340 LQEINQTAINAASVAREDVIGRPFW-EAFWWSHDDQVAEQVKSSVQAAIRGETSRFDI-A 397

Query: 401 HTIQWNRENSLAMTFIPFEK---ANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
           + I  +    + ++F+P       ++    +       +  D    +R ++    
Sbjct: 398 YRIAGDSSRMVDVSFVPVRDESGRDESGPPLYVVASGFDVTDRYEFERSLKDATD 452



 Score = 46.6 bits (109), Expect = 0.019,   Method: Composition-based stats.
 Identities = 16/135 (11%), Positives = 41/135 (30%), Gaps = 10/135 (7%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR----- 139
           F   +D  G L+EI++            +IG    +         ++ + + +K      
Sbjct: 330 FVGIVDLDGVLQEINQTAINAASVAREDVIGRPFWE---AFWWSHDDQVAEQVKSSVQAA 386

Query: 140 -QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
            +         + I G +  + +D++ +P+   +          +V       D     +
Sbjct: 387 IRGETSRFDIAYRIAGDSSRM-VDVSFVPVRDESGRDESGPPLYVVASGFDVTDRYEFER 445

Query: 199 RLDKKFSHLHEIKKG 213
            L        +  + 
Sbjct: 446 SLKDATDAADQANRA 460


>gi|83815808|ref|YP_445757.1| PAS domain-containing protein [Salinibacter ruber DSM 13855]
 gi|83757202|gb|ABC45315.1| PAS domain S-box protein [Salinibacter ruber DSM 13855]
          Length = 904

 Score =  367 bits (941), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 133/749 (17%), Positives = 255/749 (34%), Gaps = 53/749 (7%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV---SDILHIDPNNHIG----DLLKRQ 140
            +D  G   + +  + + + +    + G    +V         D           +L+  
Sbjct: 176 RLDQEGTFVQANGRVAEVLRSSEDDICGRTYAEVEWTLTPFGADTMPEEAVPFNHVLETG 235

Query: 141 NTWYG--KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
            +      +  WP +GT   + +  +  P+ +   +  G      +             +
Sbjct: 236 ASVRDAELSVQWP-DGTQRVLSV--SGAPLQAE-GKGPGA--VFHLRDITDRVRREQTLR 289

Query: 199 RLDKKFSHLHEIKKG---HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255
           R+ +++  L +           E  ++ +   Q         + V   T +    D++ +
Sbjct: 290 RVKERYQTLVDNFPDGGVFLFGEDLRFRLAGGQRLESAGLPPSNVEGKTPHDLFPDEIAR 349

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
                       +L  ++  +         +     ++  + +    L+     +     
Sbjct: 350 EHVTYF----RRALDGEKHVYEQEYQGQHYRVQTLPIRGKAGDVISGLAVSQDITERKER 405

Query: 316 DEGENLTPETVDKCPIPFFVYS--------HGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
           +     +           F+                 NP +     +   +         
Sbjct: 406 ERRLRQSETLFQNAQDALFLLDVEGEADGRTFRYRRVNPVYEEQFGHAEAEIRGR----- 460

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
               +P+       + +M+ +  R      ARL+    + E                   
Sbjct: 461 ----SPREVFGGDARRLMMEKCRRCVQHREARLYEETISLEGRETYWKTRIAPVVVEGRV 516

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
               GI  +  +    +  +E +        E  S G    +      +  +   ++ GY
Sbjct: 517 RQIVGITRDVTEQHRRQEALERQNDLFDRAQEIASVGAWEYDARADASNWTKKAYEILGY 576

Query: 488 PVE-DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
           P + D        +        +   L + L       LE         +++   RI  +
Sbjct: 577 PPDADPNPSTAVGYYHPEDQPRVQKALRDALQEGKPSDLEVRV---AAGDEVRWARIRGE 633

Query: 547 KLPFSSCYSLT---MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
                         + DI+E KQ +  L  AK+ AE+ S  KS  LA +SHEIRTPLT+I
Sbjct: 634 PQWEDGEVVRVRGTIQDITERKQRERALREAKQEAEEASQLKSSLLANMSHEIRTPLTSI 693

Query: 604 IGFSE--VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           IGF+E    + +      +     YA  I++SG  +L+ +  +L++SK+E+G+M L   P
Sbjct: 694 IGFAEATNAEAKELDLPDDSPLPNYAELIEQSGRRLLETLEGVLNLSKLEAGEMELEARP 753

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIA-LNILSNAIHFTP 720
           V L E        ++  A EK +L++           AD   V QI   N+LSNA+ +T 
Sbjct: 754 VDLVEEAEAVAEELRPRAEEKEVLLQLETEAA--WAEADKGGV-QILARNLLSNAVKYTE 810

Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
           +GG++ + T +     V   V DTG+GM     E   +PF Q         +GTG+GL +
Sbjct: 811 AGGRVRLRT-YREEGAVAFEVEDTGIGMDPETAEGLFEPFRQASEGFSREYQGTGIGLAV 869

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            K       G   + +   +GT I +  P
Sbjct: 870 TKETTKQMEGSIDVETEKGEGTRITVWLP 898



 Score = 67.7 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 19/180 (10%), Positives = 51/180 (28%), Gaps = 10/180 (5%)

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468
            +  +   P  K            +      +   +  +  +   L  ++E +   I  +
Sbjct: 118 TAGGLFLTPAPKLQPPVVLAIMVVVGLTVSVSLRGRMTIRRQRDLLDRLVETSPGAIVRL 177

Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVF------LEQNTPSVMNHYLTEILSLDLR 522
           ++EG  +  N  V+++     +DI  + +            +T          +L     
Sbjct: 178 DQEGTFVQANGRVAEVLRSSEDDICGRTYAEVEWTLTPFGADTMPEEAVPFNHVLETG-A 236

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAE 579
              +        +     L +    L            + DI++  + +  L   K+  +
Sbjct: 237 SVRDAELSVQWPDGTQRVLSVSGAPLQAEGKGPGAVFHLRDITDRVRREQTLRRVKERYQ 296



 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/469 (8%), Positives = 111/469 (23%), Gaps = 39/469 (8%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTWY 144
            +        +    +  ++ G     + G    D+        +       L  +   Y
Sbjct: 307 VFLFGEDLRFRLAGGQRLESAGLPPSNVEGKTPHDLFPDEIAREHVTYFRRALDGEKHVY 366

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            +       G +  V      LPI  +  +     G  +        +     ++ +  F
Sbjct: 367 EQEYQ----GQHYRVQT----LPIRGKAGDVI--SGLAVSQDITERKERERRLRQSETLF 416

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPP------HLRMKNKVSSLTEYYAHKDDVLKTEK 258
            +  +         +     F  +   P                        D      +
Sbjct: 417 QNAQDALFLLDVEGEADGRTFRYRRVNPVYEEQFGHAEAEIRGRSPREVFGGDARRLMME 476

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
                 +       E+  ++   +   K     +        + +      +      E 
Sbjct: 477 KCRRCVQHREARLYEETISLEGRETYWKTRIAPVVVE-GRVRQIVGITRDVTEQHRRQEA 535

Query: 319 ENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS---TLLDAPKL 375
                +  D+      + S G   Y   +       K+ + +          +       
Sbjct: 536 LERQNDLFDRAQE---IASVGAWEYDARADASNWTKKAYEILGYPPDADPNPSTAVGYYH 592

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
            ++       L  + +    +   +       +           +  +  E +   G   
Sbjct: 593 PEDQPRVQKALRDALQEGKPSDLEVRVA--AGDEVRWARIRGEPQW-EDGEVVRVRGTIQ 649

Query: 436 EDVDTRINKRKMEIEVMQLC-------SILEATSDGIA--IINREGIILSTNRAVSKLFG 486
           +  + +  +R +     +         S+L   S  I   + +  G   +TN    +L  
Sbjct: 650 DITERKQRERALREAKQEAEEASQLKSSLLANMSHEIRTPLTSIIGFAEATNAEAKEL-- 707

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
             + D    P    L + +   +   L  +L+L   +  E        +
Sbjct: 708 -DLPDDSPLPNYAELIEQSGRRLLETLEGVLNLSKLEAGEMELEARPVD 755


>gi|322382892|ref|ZP_08056727.1| two-component sensor histidine kinase-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321153161|gb|EFX45616.1| two-component sensor histidine kinase-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 606

 Score =  367 bits (941), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 94/435 (21%), Positives = 188/435 (43%), Gaps = 34/435 (7%)

Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
             +         R+  +     N      +P    ++  E         E++  ++    
Sbjct: 197 RIARGITRPIE-RITRVARQMANQQYAARVPEAGNDEVGELARTINRMAENLQIQMQH-- 253

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
           +     +L  +LE    G+ ++++ G I   NR+   + GY   ++L K +   L+    
Sbjct: 254 IRENEYRLQGVLENMVSGVMMVDQRGTITLVNRSAEDILGYSSHELLNKSY---LDAGFQ 310

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEW 564
                 L + +    R  + +  +    +E++L + +              + +HDI+  
Sbjct: 311 LEFTALLADAIETHTR--VREELMLHFPQEQILEVHVSPIVQGDGQRKGVLVVLHDITAV 368

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           ++ +                +S+F+A VSHE++TP+ A+ GF+E +              
Sbjct: 369 RRLE--------------RIRSEFVANVSHELKTPVAAVKGFAETLMAGAL--EDKEMAR 412

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
            +   I    + +  ++ D+L++SKIES ++ L F PV ++  V  +I +++  A +K I
Sbjct: 413 SFLQIIYDESDRLNRLIGDILELSKIESKRIPLQFSPVDVESIVENSIQMMKAEAEKKHI 472

Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-------SNEEV 737
            + +   N +  I AD   ++QI +N+LSN I +TP GG++ I             NE +
Sbjct: 473 TLESCVENEL-YIEADEDRLRQILINLLSNGISYTPEGGRVSIGVEFVPSLDDNPDNERM 531

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
            +R+ DTG+G+   +L +  + F ++  ++     GTGLGL + K + + + G   + S 
Sbjct: 532 RIRISDTGIGIPEKDLPRIFERFYRVDKARSRSSGGTGLGLSIVKHLTELHHGTISVESE 591

Query: 798 PAKGTLIEIIFPLYD 812
             KGT   I  P+  
Sbjct: 592 AGKGTTFNIELPVIQ 606



 Score = 43.5 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 19/168 (11%), Positives = 49/168 (29%), Gaps = 15/168 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D  G +  ++      +G  + +++     D      ++    + D ++   T   +  
Sbjct: 275 VDQRGTITLVNRSAEDILGYSSHELLNKSYLD--AGFQLEFTALLADAIETH-TRVREEL 331

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           +           +++   PI   + +  G     ++H            +RL++  S   
Sbjct: 332 MLHF---PQEQILEVHVSPIVQGDGQRKGV--LVVLHDITAV-------RRLERIRSEFV 379

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256
                           F++      L  K    S  +    + D L  
Sbjct: 380 ANVSHELKTPVAAVKGFAETLMAGALEDKEMARSFLQIIYDESDRLNR 427


>gi|288941100|ref|YP_003443340.1| signal transduction histidine kinase with CheB and CheR activity
            [Allochromatium vinosum DSM 180]
 gi|288896472|gb|ADC62308.1| signal transduction histidine kinase with CheB and CheR activity
            [Allochromatium vinosum DSM 180]
          Length = 1994

 Score =  367 bits (941), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 120/757 (15%), Positives = 247/757 (32%), Gaps = 46/757 (6%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            +D  G +   +    +  G      IG  L  +   L +    ++ D L+R  +  G++ 
Sbjct: 736  VDREGRITRFNALAVRIFGI-VDDDIGNHLVGIPCHLTL---PYLPDCLERVVS-QGESV 790

Query: 149  LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
            +  +   + +  + +   P      +  G             +   +     +++F  + 
Sbjct: 791  IERVHQGDFHYLMQID--PYRDEFGQVVGA--VLNFSDISELHRAESAHAGSEQRFRQVW 846

Query: 209  EIKKGHSSVEKEKYDIFSQQSPP-------PHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
            E       +  E   +              P   +   V  L          +    +  
Sbjct: 847  ESANEGMLLTDESGCMVLVNPALERMFGYGPGELVGQPVEILVPESRRIRHRIDRAAFAA 906

Query: 262  LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS----HRNHPSLSAYFDE 317
             +    ++    D               G            L+                E
Sbjct: 907  GSERGRAMDHARDLQGRCKEGTLFDVAIGLSNIAMDGGRFTLASVEDITERKRAERALRE 966

Query: 318  GENLTPETVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
             E      +D      + ++  +   Y +     L   K  +                  
Sbjct: 967  SEQRLRLALDAAQAGTWEWNLDSDRNYWSGRNWELYGLKQDECEPSYQA----WRGSVHP 1022

Query: 377  DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
            ++      ++  +              +   E +  +       A+   +     G   +
Sbjct: 1023 EDLERVERIIREAVEQETGFEVEWRVKRPPGEPTRWLLSRAQPIASDSDQPRRYIGAVID 1082

Query: 437  DVDTRIN--KRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDIL 493
              D +    +  +  E+  L ++L+ +  G    N  EG     +    ++FGY  +++ 
Sbjct: 1083 ITDQKEAVQRAALAGELKILQTLLDTSFAGYFDWNIAEGT-EYLSPTFKRMFGYADDELP 1141

Query: 494  RKP--FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL-----RIIIK 546
              P  +   +       +       +                K+ + + +      +   
Sbjct: 1142 NTPESWQRLIFPEDLPGVFEVYERHVRSHGSVPYHNEVRYRHKDGRTIWVICAGLVVDWT 1201

Query: 547  KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
                         DI+  KQ +  LS A+  A   +  KS FLA +SHEIRTP+ A++GF
Sbjct: 1202 PDGEPRRLIGYHIDITALKQVEQALSEARDQANASNLAKSAFLANMSHEIRTPMNAVLGF 1261

Query: 607  SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
              +++ +   P       +    I  +G  +L ++ND+LD SKIE+G + +   P  L E
Sbjct: 1262 CYLLEQRALDPTS----ADLVRKIHGAGQALLGLINDILDFSKIEAGHLEIESTPFQLSE 1317

Query: 667  AVSEAISLVQLYANEKRILIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725
             +     ++   A +K + +  +     I  ++ D   ++Q+ +N+L NAI FT  G ++
Sbjct: 1318 LLDTLAGIMTAAAGDKPLELVLTPPGEGIEGLIGDAGRLQQVLINLLGNAIKFTARG-EV 1376

Query: 726  IISTTHTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
             +     +      ++   VRDTG+G+           F Q  NS   R  GTGLGL ++
Sbjct: 1377 ELRVEQVAEHGDRLDLRFTVRDTGIGIAPEHQTNIFNAFSQADNSIGRRFGGTGLGLAIS 1436

Query: 782  KAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
            + +V    G+  + ST  +G+       L    +  D
Sbjct: 1437 QRLVHMMGGRLELESTLGQGSAFYFTLALQRDPNAPD 1473



 Score = 70.8 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 41/446 (9%), Positives = 114/446 (25%), Gaps = 43/446 (9%)

Query: 228 QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287
           +     +    +++           +    +  +  +        E     +L+      
Sbjct: 469 RRRDSVVSRPPRLARYQPPMPLGYRLSARSRSQMAPNPLRDAALDELVRAYDLSAVLVNT 528

Query: 288 YFGTLQ--NNSKESFE-YLSHRNHPSLSAYFDEGENLTPETVDKC---PIPFFVYSHGNL 341
            F  LQ   ++K  F       +    S    E          +     I         L
Sbjct: 529 NFEPLQFFGHAKRYFALPDDTSDFSIFSLCLPELRTELKSLGYRLLQEQIDVLPGIGMRL 588

Query: 342 FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401
             A+    +    + +         + L+   +L  ++          D           
Sbjct: 589 RIADQRVRIRPVARRIRLSNEQLTQAFLIVFEELPPDHWGVETEAASLDAEREDDEITRL 648

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL------- 454
             +         + +   +         Q  I+    + +    +++    +L       
Sbjct: 649 RQELAETREYLQSVLDQRELAHEELQSLQEEIQVSTEELQTANEELQSSNEELTTLNDEL 708

Query: 455 --------------CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
                          +I  +    + +++REG I   N    ++FG  V+D +       
Sbjct: 709 RLKTNESTELSTTLANIQNSIRTALIVVDREGRITRFNALAVRIFGI-VDDDIGNHLVGI 767

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL-LSLRIIIKKLPFSS--CYSLT 557
               T   +   L  ++S           +    +      ++I   +  F       L 
Sbjct: 768 PCHLTLPYLPDCLERVVSQGES------VIERVHQGDFHYLMQIDPYRDEFGQVVGAVLN 821

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
             DISE  + ++  + +++   +     ++ +      + T  +  +        + FG 
Sbjct: 822 FSDISELHRAESAHAGSEQRFRQVWESANEGM------LLTDESGCMVLVNPALERMFGY 875

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVND 643
                  +    +      +   ++ 
Sbjct: 876 GPGELVGQPVEILVPESRRIRHRIDR 901


>gi|94264870|ref|ZP_01288645.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93454691|gb|EAT04956.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 1211

 Score =  367 bits (941), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 122/582 (20%), Positives = 227/582 (39%), Gaps = 40/582 (6%)

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH-----------PS 310
           L + +    +   +  +  +    +     +++        L   N              
Sbjct: 86  LANPDHPFDQVVRYRHLKGHTVWVRCRGLAIRDKQGRPIRMLGAHNDITEYKQQQLALEE 145

Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYSHGN---LFYANPSFLLLTKYKSVDDIEIAGGLS 367
             A   + E+     V+  P+  +         + +A+ +   L  Y S + +       
Sbjct: 146 AQATLRQSEDKYRTLVENLPVLIYRSEVDAPWAMLHASQNAEQLCGYSSDEFLSGQLTWV 205

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
            ++ A  L    A     +   ++  +    R                   +  +Q    
Sbjct: 206 DVIVAEDLPLVEAAVQHAIKAREKYTVEYRIR----HQKGHVIWVSETGSAQDYDQNGHP 261

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFG 486
              +G+  +  D    ++++  +  +   + E +  GIA+ +   G  L  N AV++  G
Sbjct: 262 AYLDGVIADITDRVQAQKEISAQEAKFRGLFELSPVGIAMNDFATGEFLEFNAAVNEPAG 321

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
           Y  E+  +  +               L  +  +      EK  +   K+     + +   
Sbjct: 322 YTPEEFKQLSYFDVTPMEYMEDEKRQLESMEKIGRYGPFEKEYI--RKDGSRYPVLLNGF 379

Query: 547 KLPFSSC---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
           K             + DISE       +  A++ AE  +  KS+FLA +SHEIRTP+ AI
Sbjct: 380 KTTTPEGKAVIWSIIQDISE-------IKKAQEAAEAANRSKSEFLANMSHEIRTPMNAI 432

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           IG  ++    +  P   PR  +Y   I  S   +L ++ND+LD SKIE+GK+ +   P  
Sbjct: 433 IGLGQLALKSQ--PPPPPRLHDYLEKITGSAATLLTLINDILDFSKIEAGKLAIDQVPFD 490

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSG 722
           L E +++   L+   A EK + +  +  +  P +++ D   + Q+ +N+ SNAI FT  G
Sbjct: 491 LSEILNQLDHLMAGQAAEKGLELLFAVDSGAPRQLVGDPHRLGQVLINLTSNAIKFTQQG 550

Query: 723 GQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
            ++ IS            + + VRDTG+GM+  ++E+  +PF Q   +   +  GTGLGL
Sbjct: 551 -EVTISFEVADPTADPLILRVAVRDTGIGMSPEQIERIFQPFTQADGATTRKHGGTGLGL 609

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820
            +A  +V    G+  + STP  G+       L     PH  +
Sbjct: 610 SIAGRLVKLLGGEIRVESTPGAGSTFSFTC-LLGRHEPHKAL 650



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/386 (6%), Positives = 70/386 (18%), Gaps = 37/386 (9%)

Query: 98  ISEELPKTIGNYAFK--MIGMRLCDVSDILHIDPNNH-IGDLLKRQN-TWYGKTTLWPIE 153
           +S +  + +G        +     D+ +   +      +   L   +  +        ++
Sbjct: 44  MSPKFWQILGYDPSTKQHLSSEWQDIINQDDLKATTENLEKHLANPDHPFDQVVRYRHLK 103

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
           G    V +    L I  +       R  G  +        +   +          +  + 
Sbjct: 104 GHT--VWVRCRGLAIRDKQGRPI--RMLGAHNDITEYKQQQLALEEAQATLRQSEDKYRT 159

Query: 214 HSSVEKEKYDIFSQQSPPPHLRMKNKVSSL---------------TEYYAHKDDVLKTEK 258
                          +P   L        L                +    +D  L    
Sbjct: 160 LVENLPVLIYRSEVDAPWAMLHASQNAEQLCGYSSDEFLSGQLTWVDVIVAEDLPLVEAA 219

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL-----SHRNHPSLSA 313
                        +        +     +       +      YL        +      
Sbjct: 220 VQHAIKAREKYTVEYRIRHQKGHVIWVSETGSAQDYDQNGHPAYLDGVIADITDRVQAQK 279

Query: 314 YFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
                E       +  P+   +     G     N +      Y   +       LS    
Sbjct: 280 EISAQEAKFRGLFELSPVGIAMNDFATGEFLEFNAAVNEPAGYTPEE----FKQLSYFDV 335

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS-LAMTFIPFEKANQFPENMPQ 430
            P     +  + +                  I+ +     + +                 
Sbjct: 336 TPMEYMEDEKRQLESMEKIGRYGPFEKEY--IRKDGSRYPVLLNGFKTTTPEGKAVIWSI 393

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCS 456
                E    +           +  +
Sbjct: 394 IQDISEIKKAQEAAEAANRSKSEFLA 419



 Score = 42.7 bits (99), Expect = 0.26,   Method: Composition-based stats.
 Identities = 26/206 (12%), Positives = 69/206 (33%), Gaps = 11/206 (5%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMI-GM-RLCDVSDILHI-DPNNHIGDLLKRQNTWY 144
            +DA   +   S+   +  G  + + + G     DV     +      +   +K +  + 
Sbjct: 172 EVDAPWAMLHASQNAEQLCGYSSDEFLSGQLTWVDVIVAEDLPLVEAAVQHAIKAREKYT 231

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            +  +   +G  ++V    +A   Y +N   +   G  ++         +      + KF
Sbjct: 232 VEYRIRHQKGHVIWVSETGSAQ-DYDQNGHPAYLDG--VIADITDRVQAQKEISAQEAKF 288

Query: 205 SHLHEIKKGHSSVEK-EKYDIFSQQSP--PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
             L E+     ++      +     +    P      +   L+ +     + ++ EK  L
Sbjct: 289 RGLFELSPVGIAMNDFATGEFLEFNAAVNEPAGYTPEEFKQLSYFDVTPMEYMEDEKRQL 348

Query: 262 LTSE--ESSLPEQEDFHTINLNQYTK 285
            + E      P ++++   + ++Y  
Sbjct: 349 ESMEKIGRYGPFEKEYIRKDGSRYPV 374


>gi|298530364|ref|ZP_07017766.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509738|gb|EFI33642.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 919

 Score =  367 bits (941), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 133/809 (16%), Positives = 273/809 (33%), Gaps = 87/809 (10%)

Query: 71  ENTFVFDPIPRTVRFTWN--------IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS 122
           E  F         R            + + G +   ++   + + ++   + G    D+ 
Sbjct: 48  EQVFTLKGADHPFRVLMEDMSEGALTLSSDGIVLYANQRFAEMLKSHLNLVAG---SDLV 104

Query: 123 DILHIDPNNHIGDLLKR--QNTWYGKTTLWPIEGTNLYVPIDLAALPI--YSRNREFSGF 178
             +          LL+        G+  L   +G    VP   +  P+        F   
Sbjct: 105 QWIQSGHRCRFYSLLQGQSGQRSSGEINLVDSQG--ALVPTQFSLTPLETQDIQGAF--- 159

Query: 179 RGFGIVHVN------RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP 232
               +V         +         +   ++     E  +       +      +     
Sbjct: 160 --CAVVTDLSEHKRLQEIKAAEQTARARAQEAERYSETLESLVRDLNKARKGLKENQNFL 217

Query: 233 HLRM------------------KNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQED 274
              +                   N+V        H         +          P    
Sbjct: 218 ESVLDTIQDGIVVLDKDMNIIKTNRVIQNLYSLDHSRQEKCYTAFHGRREPCDLCPTSRA 277

Query: 275 FHTINLNQY------------TKKQYFGTLQNNSKESFEYLSHRNHP----SLSAYFDEG 318
             T NL               T + +   +++        + +                 
Sbjct: 278 MQTGNLEVEEIPIIQNGVETGTMEVFAYPMRDEQGNITGVVEYARDISKVKRNRQALKRS 337

Query: 319 ENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
           + L   T +   I  +       +   +     +  Y          G  + LDA    D
Sbjct: 338 QALLSRTQEIADIGSWEMDLDKDVLTWSDQVYRMFGYAPQSF---QPGYQSFLDAVHPED 394

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
             ++    L                ++ + +    +      + +     +   G   + 
Sbjct: 395 RESVHKKYLESMLDVSQGFEFEHRIVRADSQEVRYVREQGLHELDDAGRVVLSYGAIQDI 454

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
            + ++   K+     +  ++++ + + I + + EG  +  N A     GY  E++L    
Sbjct: 455 AENKLAADKLREREEKYRALVDQSVEMIYLHDMEGRFIEVNAAAVSNTGYTREELLSMNV 514

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL--PFSSCYS 555
                            + +      T+E       K+  ++ + + I K+         
Sbjct: 515 FDLHTDQLSQEEVKNYWQSMLPGQSMTVETE--HHKKDGSVIPVEVKIGKIYYSNQEHIM 572

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
             + DI+E KQ   +L  A++ AE+ +  KS FLA +SHEIRTP+ A++GF+ +++N   
Sbjct: 573 ALVQDITERKQVHQEL-IARRSAEEANRAKSRFLANMSHEIRTPMNAVLGFARMLEND-- 629

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
            P    +    A  I RSG+ +L ++N +LD+S+IE+G+  LH E   L   + + +++ 
Sbjct: 630 -PALPAKQAAQAGTIVRSGDHLLQLLNSILDMSRIEAGQSGLHPEDFHLPGLIDKLMTMF 688

Query: 676 QLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIIS----- 728
           +L A +K + +      ++P  + AD   + QI  N+LSNAI FT +G  ++ IS     
Sbjct: 689 ELSAQDKGLELVLEKDPHLPPDLHADQGKLLQILTNLLSNAIKFTSTGEVKLTISSKPPG 748

Query: 729 ---TTHTSNE-EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
              T     +  ++ +V+D+G G+T  +  +  +PF Q  N  ++   GTGLGL +++  
Sbjct: 749 PADTACEEQDLGLVFQVQDSGPGITAQDQAQLFEPFFQTQN--KMHPGGTGLGLTISREY 806

Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
                G   + S   +G+   +  P+   
Sbjct: 807 AVLMGGNLTVSSQEGRGSCFRLEIPVKRA 835



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 30/249 (12%), Positives = 77/249 (30%), Gaps = 25/249 (10%)

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
            +        D       ++        ++E  S+G   ++ +GI+L  N+  +++    
Sbjct: 35  GEVDALVVSTDQGEQVFTLKGADHPFRVLMEDMSEGALTLSSDGIVLYANQRFAEMLKSH 94

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
           +  +       +++          L                     +  L+  +  +  L
Sbjct: 95  LNLVAGSDLVQWIQSGHRCRFYSLLQGQSGQRSSG----EINLVDSQGALVPTQFSLTPL 150

Query: 549 PF---SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK--SDFLARVSHEIRTPLTAI 603
                   +   + D+SE K+ +   +  +    +    +  S+ L  +  ++     A 
Sbjct: 151 ETQDIQGAFCAVVTDLSEHKRLQEIKAAEQTARARAQEAERYSETLESLVRDLN---KAR 207

Query: 604 IGF--SEVIKNQRFGPLGNPRYI--EYANYIDRSGNLVLDIVNDL--LDISKIESGKMNL 657
            G   ++         + +   +  +  N I  +      ++ +L  LD S+ E      
Sbjct: 208 KGLKENQNFLESVLDTIQDGIVVLDKDMNIIKTN-----RVIQNLYSLDHSRQEKCYTAF 262

Query: 658 H--FEPVSL 664
           H   EP  L
Sbjct: 263 HGRREPCDL 271


>gi|160877439|ref|YP_001556755.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS195]
 gi|160862961|gb|ABX51495.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS195]
 gi|315269641|gb|ADT96494.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS678]
          Length = 1629

 Score =  367 bits (941), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 121/782 (15%), Positives = 269/782 (34%), Gaps = 68/782 (8%)

Query: 90   DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNTWYGKT 147
            D  G +   ++   +  G      +G   C +     I         ++L  + +    T
Sbjct: 363  DTKGQITSWNQGAEQLFGYTEAHALGQSCCKLIVPASIVQEERALFAEVLAGKTSLNRIT 422

Query: 148  TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA----LGKRLDKK 203
            +    +G++L       A+PIY  + + +G      +       +       L   L+++
Sbjct: 423  SHQRQDGSHLSTSTT--AVPIYDEHGKIAGMSQ--TIRDITAQLEAERHILSLNASLERQ 478

Query: 204  FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM------------------KNKVSSLTE 245
             +      +      +   D  +QQ                          + ++   T 
Sbjct: 479  VTKRTHALQQALLENQTLLDTINQQLLYSVTDPNGVILEVNDNFCRISGYPREQLVGKTH 538

Query: 246  YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTIN--LNQYTKKQYFGTLQNNSKESFEYL 303
                  +   +    +     +      +   ++            G + +   +   ++
Sbjct: 539  AILQSGEHDASFWQSMWQQINAGQSWHGEICNLDKHQTLKWFDTVIGPVFDEYGKIERFV 598

Query: 304  SHRNHPSLSAYFDEGENLTPETVDKCPIP------FFVYSHGNLFYANPSFLLLTKYKSV 357
            + R   +        +N     +                  GN+   N     L  Y + 
Sbjct: 599  ALRIDITDRKLTQIEKNNLGSLLTNVLDAASEMSIIATDVQGNITIFNRGAERLLGYSAE 658

Query: 358  DDIEIAGGLSTLLDAPKLSDNNAIKP------------VMLYRSDRTCIAASARLHTIQW 405
            + I  +      L    +  +  +              +   R++ +      R  T   
Sbjct: 659  EMIGQSTPAPLHLLEEVMIRSAELSAEYGKDIQGFDVFIYKARAEGS----ETRNWTYVR 714

Query: 406  NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465
               +   ++       +   E +   GI  +     + ++ +      L    E    GI
Sbjct: 715  KDGSQFQVSLSVTAMRDSVGEIIGYLGIGVDISLMLLQQQALMTASNHLSKAAEVAQLGI 774

Query: 466  AIINREGIILSTNRAVSKLFG----YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
               N  G  L  N  +  ++        + +  + +++ +  +  +  +  L   +    
Sbjct: 775  WTWNLLGNSLEWNERMFAIYDQPESLREQGLTYEHWSMRVHPDDIAFADAKLKGAVEGTA 834

Query: 522  RQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAE 579
            +       + +    + +     +++              DI+E +Q +  L  AK+ A+
Sbjct: 835  KYDPIFRVVRTDGSIRFVQAAAQVERDKQGHAIRVIGINLDITEQQQLEESLREAKQEAD 894

Query: 580  KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639
              S+ KS FLA +SHEIRTP+ A++G  ++I+          +  +Y N    +   +L 
Sbjct: 895  AASAAKSAFLANMSHEIRTPMNAVLGMLQLIQYTSLSR----QQQDYVNKTQTAAKSLLG 950

Query: 640  IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-IL 698
            ++ND+LD SKI+ GK+ L   P S++  + +   ++     +K + +       +P  +L
Sbjct: 951  LLNDILDFSKIDVGKLILDLHPCSIELLMRDLAVVLSGNHGDKDVEVMFDLDTALPPWLL 1010

Query: 699  ADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVI--LRVRDTGVGMTNYELEK 755
            AD   ++QI +N+  NA+ FT  G  I+ I       + V   + + DTG+G+++ ++E+
Sbjct: 1011 ADQLRLQQILVNLAGNALKFTHHGQVIVGIECLRHEADTVTVQISITDTGIGISDEQIER 1070

Query: 756  AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI--IFPLYDT 813
                F Q  +S   R  GTGLGL ++K ++     + ++ S    G+       FP+   
Sbjct: 1071 IFTGFEQAESSTSRRFGGTGLGLAISKRLIGLMGSELHVTSKVGVGSRFWFDMTFPIIQV 1130

Query: 814  SH 815
              
Sbjct: 1131 EE 1132



 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 53/426 (12%), Positives = 113/426 (26%), Gaps = 35/426 (8%)

Query: 168 IYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ 227
               + EF G RGFG +   RV +   A      ++        +  ++ + E+Y I   
Sbjct: 92  TRDVDHEFPGARGFGFIR--RVPSPDEAAFIARARQDDWPDFNIRQLNAHDGERYVIEYI 149

Query: 228 QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287
           +   P  R K  V       AH+                + +   +       +    + 
Sbjct: 150 E---PVDRNKAAVGLDIASEAHRKAAADAAMLSGEVRLSAPITLVQATGRPLQSFLILQP 206

Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPS 347
            +                             ++           P            N  
Sbjct: 207 IY--------------------RTGLVPKTQQDRLSAGYGWSYAPLVTNEVLMGLALNQK 246

Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
              L     + DI  A    +  +      +           D         +       
Sbjct: 247 MTKLL----LSDITQAERPISFFETHPDEASPLSAYRHKMTKDIFGRKWQIEVIAYPSFI 302

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
           ++           +      +    I    +  +  ++ +  +  +  S+LE + DGI  
Sbjct: 303 KSLHLNQPSLVLLSGSLFSLLLAALIAMWSISLQRKQQVLLEQARR-ASMLEHSLDGIIS 361

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
            + +G I S N+   +LFGY     L +     +   +       L   +       L +
Sbjct: 362 YDTKGQITSWNQGAEQLFGYTEAHALGQSCCKLIVPASIVQEERALFAEVLAGKTS-LNR 420

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESS 583
           IT    ++   LS       +            T+ DI+   + +  +       E++ +
Sbjct: 421 ITSHQRQDGSHLSTSTTAVPIYDEHGKIAGMSQTIRDITAQLEAERHILSLNASLERQVT 480

Query: 584 HKSDFL 589
            ++  L
Sbjct: 481 KRTHAL 486



 Score = 91.2 bits (225), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 39/390 (10%), Positives = 104/390 (26%), Gaps = 31/390 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTWYGK 146
            D +G + E+++   +  G    +++G     +      D +    +   +    +W+G+
Sbjct: 509 TDPNGVILEVNDNFCRISGYPREQLVGKTHA-ILQSGEHDASFWQSMWQQINAGQSWHGE 567

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA--LGKRLDKKF 204
                   T  +    +   P++    +   F    I   +R         LG  L    
Sbjct: 568 ICNLDKHQTLKWFDTVIG--PVFDEYGKIERFVALRIDITDRKLTQIEKNNLGSLLTNVL 625

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
               E+    + V+                  +  +   T    H  + +      L   
Sbjct: 626 DAASEMSIIATDVQGNITIFNRGAERLLGYSAEEMIGQSTPAPLHLLEEVMIRSAELSAE 685

Query: 265 EESSLPEQEDF----------------HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
               +   + F                   + +Q+        ++++  E   YL     
Sbjct: 686 YGKDIQGFDVFIYKARAEGSETRNWTYVRKDGSQFQVSLSVTAMRDSVGEIIGYLGIGVD 745

Query: 309 PSLSAYFDE----GENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIA 363
            SL     +      N   +  +   +  + ++  GN    N     +  Y   + +   
Sbjct: 746 ISLMLLQQQALMTASNHLSKAAEVAQLGIWTWNLLGNSLEWNERMFAI--YDQPESLREQ 803

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
           G            D+ A     L  +             ++ +  +   +      + ++
Sbjct: 804 GLTYEHWSMRVHPDDIAFADAKLKGAVEGTAKYDPIFRVVRTDG-SIRFVQAAAQVERDK 862

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
               +   GI  +  + +  +  +     +
Sbjct: 863 QGHAIRVIGINLDITEQQQLEESLREAKQE 892


>gi|298530456|ref|ZP_07017858.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509830|gb|EFI33734.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 1033

 Score =  367 bits (941), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 115/744 (15%), Positives = 245/744 (32%), Gaps = 45/744 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWY 144
            W +        +++     +G    ++    L D+  +  ++       ++ +   +  
Sbjct: 29  VWYLVNEYTYGAVNKAHADFLGMQVQEVSYASLYDLFPVDVVEVCRPGNREVFETGESLQ 88

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            +   W  + +     + +   P   R+                     +      + KF
Sbjct: 89  TEE--WVPDASGELRLLSIKKSPGLDRDGRVKYV--VCSADDITDQRRLQDSLAESEDKF 144

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
             L E      ++ +   D         +L +       T   A +              
Sbjct: 145 RLLAENAPMGIALHELVLDKHGNPVDYRYLDVNQGFERHTGLKASQVTGRTAG-QVFGRQ 203

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQ----------NNSKESFEYLSHRNHPSLSAY 314
           ++    +      +     + ++   +L             ++ +  ++        +  
Sbjct: 204 QDPPFLDTYARVVLGGRSVSFEEEVESLGRSFLINAYKVGLNRFATVFMDVSQRRQATRE 263

Query: 315 FDEGENLTPETVDKCPIPFFVYSHGNLFY-ANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
            +   +      +        +   +L +  N  F  +  Y  +++I        +    
Sbjct: 264 AEVRRSHFESIFENTKDAMVFFDTSHLIFNINSRFTAMFGYT-LEEIRGKQVNRVVDPER 322

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
              D  +   +                     + +    +            E +    I
Sbjct: 323 LADDYISSSVL-------EGENVEKETVRYCRDGQPLDVLIKG--GPVYVAGEIVGGYSI 373

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
             +    +  +R++  +   L  I+    D +AI   +  I   N+A  +      E + 
Sbjct: 374 YSDISGRKQAERELTKQNQLLEGIINGIPDILAIQYPDHSIKRYNQAGYQALNKSPEQVA 433

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553
            +     +             E L+    Q +EK           + +      +     
Sbjct: 434 GRKCFELI-GRDRECEVCATREALNTGTLQQVEKYVPELD-----VYMDCRSNPIFNEQG 487

Query: 554 YSLTM----HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
             L +     DI++ K+++ +L  AK+ AE  S  KS+FLA +SHEIRTP+  I+G  E+
Sbjct: 488 EILYIIEQLRDITQRKKDEIELIVAKEQAEAASKAKSEFLANMSHEIRTPMAGIMGALEM 547

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           +  +      +            S   +  I+ND+LD+SK+E+GK+ +  +         
Sbjct: 548 VSAR----TDDEESRRLMKMTLESARSLQQIINDILDLSKVEAGKLEIEHQEFDPQSLFK 603

Query: 670 EAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI-II 727
             + L  + A EK I ++   A  IPR +  D   ++Q+  N++SNA+ FT  G  I  +
Sbjct: 604 RVMDLYSIQAGEKNIELQLDTAPGIPRRLCGDQYRLEQVLRNLVSNAVKFTSQGRVILRV 663

Query: 728 STTHTSNEEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
                ++ +      V DTGVG+    L +    F Q  ++   + +GTGLGL ++  +V
Sbjct: 664 RPVQAASGKARLNFEVEDTGVGIKEDFLPRLFDSFTQADSTYGKKHQGTGLGLAISNRLV 723

Query: 786 DANMGKFYIFSTPAKGTLIEIIFP 809
               G     S P  G++     P
Sbjct: 724 QMMGGDIQAQSIPGAGSIFSFSLP 747



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/160 (11%), Positives = 55/160 (34%), Gaps = 4/160 (2%)

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
           D    + ++         +L+  +  +  +  E    + N+A +   G  V+++      
Sbjct: 3   DRNKPEDELRRSEASQRILLDNIATQVWYLVNEYTYGAVNKAHADFLGMQVQEVSYASLY 62

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSL 556
                +   V      E+         E+    ++ E +LLS++                
Sbjct: 63  DLFPVDVVEVCRPGNREVFETGESLQTEEWVPDASGELRLLSIKKSPGLDRDGRVKYVVC 122

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
           +  DI++ ++ ++ L+ ++         ++  +    HE+
Sbjct: 123 SADDITDQRRLQDSLAESEDKFRLL--AENAPMGIALHEL 160


>gi|212633456|ref|YP_002309981.1| PAS domain-containing protein [Shewanella piezotolerans WP3]
 gi|212554940|gb|ACJ27394.1| PAS domain protein [Shewanella piezotolerans WP3]
          Length = 1203

 Score =  367 bits (941), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 122/571 (21%), Positives = 210/571 (36%), Gaps = 37/571 (6%)

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
              P+   E+ +      F  ++      KQY   L   ++   + ++ R          
Sbjct: 362 SAEPIKPPEKITQGWGPWFQLVSRIFEENKQYTRHLAEQNRRLDKLVAQRTERLKETTER 421

Query: 317 EGE--NLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
             E   L    +D  P    F    G     N S   +  Y   + +        L+ + 
Sbjct: 422 REEEYALLRSLLDSIPEAIVFKDKDGRYLGCNKSAERMLGYTENEIVGQY--ADALIPSE 479

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
           +     A    +L            R           + +  +     N+  E +    +
Sbjct: 480 QAVRIRAEDERVLANR------VPLRYQEKVDFAGKPVLLDTLKIPFYNRRDELLGLIAV 533

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIA--IINREGIILSTNRAVSKLFGYPVED 491
             +      +  ++ +   +    ++A  DG+    ++ E II   N A   + GY   +
Sbjct: 534 WRDVTREYESAEQLRLSEERYHLAMDAVEDGLWDWYLDSEQII--CNPAYYSMLGYKSNE 591

Query: 492 --ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR-----II 544
              L       +  +    +  +  E L+  +  T +       K  +   L      + 
Sbjct: 592 FPALVSTIDELIHPDDRIRVEEHRNEYLNNPI-GTYDVEFRMLGKSGEYHWLLSRGRVVE 650

Query: 545 IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
                       T  DI+  K+ +  +  AK+ AE  + +KS+FLA +SHEIRTP+ AII
Sbjct: 651 FTPTNQPKRMVGTHKDITRHKRNEVAMLEAKQDAEMANLYKSEFLANMSHEIRTPMNAII 710

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           G  ++ +          +  +Y    D S + +L I+ND+LD SKIE+GK+ L      L
Sbjct: 711 GMLQLAQRTSLTL----QQKDYLEKADFSAHSLLRIINDILDFSKIEAGKLELERVAFPL 766

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG 723
           D+ +  A+ L  L A EK + +          IL  D   + Q+ +N+LSNA+ FT SG 
Sbjct: 767 DKVLDHALDLNALKAQEKGVELLLYAPVTAGLILEGDPLRLGQVLINMLSNAVKFTKSG- 825

Query: 724 QIIISTTHTSNEE------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
              I        E      +   VRDTG+G++  +       F Q   S   +  GTGLG
Sbjct: 826 --EIELGCEDVGERDHRITLKFWVRDTGIGISKEQQAILFDAFAQADGSTTRKYGGTGLG 883

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           L ++K +V    G   + S    G+      
Sbjct: 884 LSISKHLVSMMGGTMQVESEMGVGSTFSFTI 914



 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/309 (10%), Positives = 84/309 (27%), Gaps = 15/309 (4%)

Query: 79  IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI-DPNNHIGDLL 137
                   +  D  G     ++   + +G    +++G     +               +L
Sbjct: 434 DSIPEAIVFK-DKDGRYLGCNKSAERMLGYTENEIVGQYADALIPSEQAVRIRAEDERVL 492

Query: 138 KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN-RVDNDPRAL 196
             +     +     ++     V +D   +P Y+R  E  G     +     R       L
Sbjct: 493 ANRVPLRYQE---KVDFAGKPVLLDTLKIPFYNRRDELLGL--IAVWRDVTREYESAEQL 547

Query: 197 GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK----VSSLTEYYAHKDD 252
               ++    +  ++ G      +   I    +    L  K+     + S  +   H DD
Sbjct: 548 RLSEERYHLAMDAVEDGLWDWYLDSEQIICNPAYYSMLGYKSNEFPALVSTIDELIHPDD 607

Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
            ++ E++              +F  +     + + ++   +    E       +      
Sbjct: 608 RIRVEEHRNEYLNNPIGTYDVEFRMLG---KSGEYHWLLSRGRVVEFTPTNQPKRMVGTH 664

Query: 313 AYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                 +      ++          + + F AN S  + T   ++  +      ++L   
Sbjct: 665 KDITRHKRNEVAMLEAKQDAEMANLYKSEFLANMSHEIRTPMNAIIGMLQLAQRTSLTLQ 724

Query: 373 PKLSDNNAI 381
            K     A 
Sbjct: 725 QKDYLEKAD 733


>gi|229198736|ref|ZP_04325434.1| hypothetical protein bcere0001_42600 [Bacillus cereus m1293]
 gi|228584758|gb|EEK42878.1| hypothetical protein bcere0001_42600 [Bacillus cereus m1293]
          Length = 558

 Score =  367 bits (941), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 91/388 (23%), Positives = 179/388 (46%), Gaps = 26/388 (6%)

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           +           +   + +  +E E    +L +++E    G+ +I+  G I   NR+  +
Sbjct: 187 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 246

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542
            F    E+ L + +           +   + EI   +++   + +  LG  ++   +   
Sbjct: 247 TFHVTDEEYLDRLYYESFHH---PEIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 303

Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
            II          L  HDI+E K+ +                + DFLA VSHE++TP+T+
Sbjct: 304 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 349

Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           I GFSE + +   G + N ++ E + + I +    +  ++ DLLD+SKIE     L    
Sbjct: 350 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLSMGT 406

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           V +   + +   ++   A EK I ++ +    +  ++ D   ++QI +N+++NAI +TP+
Sbjct: 407 VDMKGLLEDIHMVLDNKAGEKEISLQVNALKRV-SVIGDPSRLQQIFINLMNNAIVYTPA 465

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           GG + +           ++V DTG+G++  E+ +  + F ++  ++     GTGLGL + 
Sbjct: 466 GGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIV 524

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           K +V+A+ G   + S   +GT   ++ P
Sbjct: 525 KHLVEAHHGTITVDSEVGEGTTFTVVLP 552


>gi|190892952|ref|YP_001979494.1| two-component sensor histidine kinase/response regulator hybrid
           protein [Rhizobium etli CIAT 652]
 gi|190698231|gb|ACE92316.1| probable two-component sensor histidine kinase/response regulator
           hybrid protein [Rhizobium etli CIAT 652]
          Length = 1126

 Score =  367 bits (941), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 129/718 (17%), Positives = 264/718 (36%), Gaps = 50/718 (6%)

Query: 122 SDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF 181
           SD         + + L++ +   G    +  +G  L V          + +R+ +G    
Sbjct: 131 SDPGSAADLAQVREALEKLDQPIGI---FAADGRPLVV---------NAAHRKGAGPAPA 178

Query: 182 GIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS 241
           G        ++  AL   L+     +      H  +        ++       R +++  
Sbjct: 179 GDSAWGDSVSELDALRTVLEDLPVAVFVRDDQHRLI------YANKYYETFSGRARSEYL 232

Query: 242 SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301
            +TE+     +  +      L +    +  + +    +   +         +  + +   
Sbjct: 233 GMTEHEMFGPEGAEPIYQENLLALRDGISVELESEMPSKGGHVYPVISRVNRVITADGRT 292

Query: 302 YLSHR------------NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSF 348
           Y+                  +     +         +   PI   +  +   + Y N  F
Sbjct: 293 YVVGSFSDISPLKEREKALIASRKQEEVLHRDIESILRSLPIGVLILDNDHRILYVNDEF 352

Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI--AASARLHTIQWN 406
             + +    D  +    +  +    +L   +  +      + R  +  AA      + W 
Sbjct: 353 YSIWELPREDGFDGRPFIDVIRRNHELGRYDGTRTPEELYAFRKHLFEAAEPEPIEVGWA 412

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
              S+                   + +   + +    +  +E     +     A S G+A
Sbjct: 413 GGKSVIFDSRRISNDRILLTYADISAVREREKEIHETRAALERVGEMMRDATHAMSQGLA 472

Query: 467 IINREGIILSTNRAVSKLFGYPVE--DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
           I+ ++GII  +N A++ +   P    +  +    +F         +    +IL       
Sbjct: 473 IV-QDGIIKMSNEAMADILQIPPHYIEAGQGWLGMFEFCAARGDFHDAAADILEGWRANI 531

Query: 525 LEKI---TLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE 581
             +    T+     E+ +++   +        +     D++E K  + +L      AE  
Sbjct: 532 AARQPISTVFHVGGERWVNMDATVS---TGQHWVALFTDVTELKSREEELRELLSRAEAA 588

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
              KS+FLA +SHEIRTP+  ++G +E++           R   + + I +SGN +L I+
Sbjct: 589 DRAKSEFLANMSHEIRTPMNGVLGMAELLAKTNLDT----RQKTFIDIIVKSGNALLTII 644

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILAD 700
           ND+LD SKI++G+M L      + EAV +  +L+  +A EK I +    A ++P  ++ D
Sbjct: 645 NDILDFSKIDAGQMKLRKAAFDITEAVEDVATLLSSHAAEKNIELLVRAAPDLPAAVIGD 704

Query: 701 LRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVI--LRVRDTGVGMTNYELEKAM 757
               +QI  N++ NA+ FT  G   + +     +  E++  +R+ DTG+G+   +LE   
Sbjct: 705 AGRFRQIVTNLVGNAVKFTERGHVFVDVGFETVAGGEIMANIRIEDTGIGIPEEKLESVF 764

Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
             F Q+  S   R EGTGLGL +   +VD   G   + S   +G++  +  P    + 
Sbjct: 765 DKFSQVDASSTRRHEGTGLGLAITAGLVDLFGGYIKVESQWGEGSVFTVNLPFAVAAA 822



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 54/443 (12%), Positives = 121/443 (27%), Gaps = 47/443 (10%)

Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS 242
           I   +R   D     +R DK+   L    + ++           +           ++  
Sbjct: 41  IGRRSRELFDRPEEEEREDKERRALVFGTEENAICFDAASLNHERIQIESFSPSPERIYV 100

Query: 243 LTEYYAHKDDVLKTEKYPLLT-------------SEESSLPEQEDFHTINLNQYTKKQYF 289
           L  + A     +  +                   S       +E    ++          
Sbjct: 101 LGIFEARDRRAVGNKGIGGSPQTVNDNGIASDPGSAADLAQVREALEKLDQPIGIFAADG 160

Query: 290 GTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSF 348
             L  N+             S         +     ++  P+  FV      L YAN  +
Sbjct: 161 RPLVVNAAHRKGAGPAPAGDSAWGDSVSELDALRTVLEDLPVAVFVRDDQHRLIYANKYY 220

Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
              +     + +   G     +  P+ ++    + + L   D   +   + +        
Sbjct: 221 ETFSGRARSEYL---GMTEHEMFGPEGAEPIYQENL-LALRDGISVELESEM---PSKGG 273

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ-------LCSILEAT 461
           +   +                  G   +    +  ++ +     Q       + SIL + 
Sbjct: 274 HVYPVISRVNRVITADGR-TYVVGSFSDISPLKEREKALIASRKQEEVLHRDIESILRSL 332

Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVED-ILRKPFTVFLEQNT----------PSVMN 510
             G+ I++ +  IL  N     ++  P ED    +PF   + +N           P  + 
Sbjct: 333 PIGVLILDNDHRILYVNDEFYSIWELPREDGFDGRPFIDVIRRNHELGRYDGTRTPEELY 392

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570
            +   +      + +E    G     K +   I   +   +    LT  DIS  ++ + +
Sbjct: 393 AFRKHLFEAAEPEPIEVGWAG----GKSV---IFDSRRISNDRILLTYADISAVREREKE 445

Query: 571 LSHAKKIAEKESSHKSDFLARVS 593
           +   +   E+      D    +S
Sbjct: 446 IHETRAALERVGEMMRDATHAMS 468



 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/388 (7%), Positives = 82/388 (21%), Gaps = 29/388 (7%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D    L   ++      G    + +GM   ++      +P      L  R        + 
Sbjct: 208 DDQHRLIYANKYYETFSGRARSEYLGMTEHEMFGPEGAEPIYQENLLALRDGISVELESE 267

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD----KKFS 205
            P +G ++Y P+      + + +        F  +   +         ++ +    +   
Sbjct: 268 MPSKGGHVY-PVISRVNRVITADGRTYVVGSFSDISPLKEREKALIASRKQEEVLHRDIE 326

Query: 206 HLHEIKKGHSSVEKEKYDIFS-----------QQSPPPHLRMKNKVSSLTEYYAHKDDVL 254
            +         +    + I              +      R    V          D   
Sbjct: 327 SILRSLPIGVLILDNDHRILYVNDEFYSIWELPREDGFDGRPFIDVIRRNHELGRYDGTR 386

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL--- 311
             E+            E E          +       + N+                   
Sbjct: 387 TPEELYAFRKHLFEAAEPEPIEVGWAGGKSVIFDSRRISNDRILLTYADISAVREREKEI 446

Query: 312 ---SAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
               A  +    +  +          +   G +  +N +   + +          G L  
Sbjct: 447 HETRAALERVGEMMRDATHAMSQGLAIVQDGIIKMSNEAMADILQIPPHYIEAGQGWLGM 506

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
                   D +     +L        A            E  + M               
Sbjct: 507 FEFCAARGDFHDAAADILEGWRANIAARQPISTVFHVGGERWVNMDATVSTG-------Q 559

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCS 456
               +  +  + +  + ++   + +  +
Sbjct: 560 HWVALFTDVTELKSREEELRELLSRAEA 587


>gi|311747467|ref|ZP_07721252.1| putative sensory box histidine kinase/response regulator
            [Algoriphagus sp. PR1]
 gi|311302668|gb|EFQ79250.1| putative sensory box histidine kinase/response regulator
            [Algoriphagus sp. PR1]
          Length = 1283

 Score =  367 bits (941), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 136/739 (18%), Positives = 261/739 (35%), Gaps = 43/739 (5%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMI-GMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
             D    L   +E   K        +  G          H +    I   ++  N W  + 
Sbjct: 551  TDLEQELIYANEAALKLCDKTVNDVCKGKIAEFFEFENHEEKLEEIIPKIEEGNIWQDE- 609

Query: 148  TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                I+G     P +++   I+S   +  G+    ++       + + L  R      + 
Sbjct: 610  VNLKIKGNKAE-PFEVSIKAIHSDQNQKIGYS--LVLQNLSEKYEAKKLANRAKMIVENS 666

Query: 208  HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS----LTEYYAHKDDVLKTEKYPLLT 263
              +       +  +    S          +  V S    L   YA     ++ +   +  
Sbjct: 667  PVVLFRIDPNDDFRIVYISDNVARFGYNAQQLVESKKSILDLLYAEDARHIREKSKEIKN 726

Query: 264  S-EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES----FEYLSHRNHPSLSAYFDEG 318
                 S      F   + +    +     +++ S +        L   +   L    +E 
Sbjct: 727  EFGVPSFSGSYRFKKGDGSYIWVEDQTQEVRDESGKIQLHEGLILDIDDRKKLEDINEER 786

Query: 319  ENLTPETVDKCPIP-FFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
            +          P    F+         A  +          +D E        +   +  
Sbjct: 787  DRQYRILASNIPGTNVFLLDKERKYIVAEGTNFENWGMTR-EDFEGKFLWEVHVTPYEEV 845

Query: 377  DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
            +    +     +   +  A            +   A +F P    +Q         I  +
Sbjct: 846  NALLDQVYYDRQFLESEFAF----------GDRYYARSFRPIVINDQVE---FVLSIIRD 892

Query: 437  DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
              D    K  +     +  +++E +++ I  +  +  +   +  V +  GY   D++ K 
Sbjct: 893  ITDEHQAKINLLQSEEKYRTLVEESTEIIFSLTEKFELQYVSPNVQQFLGYKASDVIGKS 952

Query: 497  FTVFLEQNTPSVMNHYLTEILS-LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-- 553
               FL  +        L +    L   Q LE        + ++ +    + +    +   
Sbjct: 953  IFEFLNPDDMGEFEKILGDNQDFLAQNQFLEFRLRHLNGDYRVFNSHGKLIEDKEGNPSF 1012

Query: 554  YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
            Y+    D+S+ K+ + +L  AK+ AE+ S  KS FL+ +SHEIRTP+ A+IG S ++  +
Sbjct: 1013 YTGIARDVSKLKEAQKELVKAKENAEQASLVKSQFLSIMSHEIRTPMNAVIGLSHLLMQE 1072

Query: 614  RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
                      +E    +  S   ++ ++ND+LD +KI+SGK+ L   P+ L   V+  + 
Sbjct: 1073 D----PRADQLENLKTLQFSAENLMALINDILDYNKIDSGKVELEELPLDLKNLVTRIVH 1128

Query: 674  LVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
                 ANEK + +      ++P+ +L D   + QI  N+LSNAI FT  G ++ I  +H 
Sbjct: 1129 SHSFQANEKDLRLSCLIDPDLPQKLLGDSVRLGQIINNLLSNAIKFTDKG-EVTIKLSHE 1187

Query: 733  --SNE--EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                    V     DTG+G+   + E   + F Q  +S   +  GTGLGL + K +V+  
Sbjct: 1188 ILEKGICRVNFECIDTGIGVPEDKKESIFEAFTQASSSTTRKYGGTGLGLAIVKRLVNLY 1247

Query: 789  MGKFYIFSTPAKGTLIEII 807
             G   + S  + G+  +  
Sbjct: 1248 GGDIEVNSNISGGSTFKFY 1266



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 59/540 (10%), Positives = 143/540 (26%), Gaps = 70/540 (12%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID-PNNHIGDLLKRQNTWYGKT 147
           +D+ G  K I   + + +G     ++G    D  D   I+         L+ +       
Sbjct: 150 LDSEGNYKFIGPSVGQKLGFKVEDIVGKNFQDFIDAGIIELVKGDFESALQSEEEV-NID 208

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH- 206
                EG         A   +++   +       G++   R   D       L K+F   
Sbjct: 209 FWVHREGEKSKYIESFAKNLLHNPQIQ-------GVIFSARDITDYVQTDFSLQKRFDLE 261

Query: 207 -LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
            +          E     + S +     +        +  +    +  L +        +
Sbjct: 262 NMINKVSALLINESPIDLLKSLKDSFSIVGEFLNAKGVEIHLREGESTLFSSLCLWGKLK 321

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
           + S+ ++ +    N      K    ++          +   N           E+     
Sbjct: 322 KRSVQKELELILQNAAFQ--KVQLKSIDEECCFILIPMVSNNRLKGLLLIQVNESNLQ-- 377

Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVD------DIEIAGGLSTLLDAPKL---- 375
            D+  +            A  +  + ++ +  +      ++    G        K+    
Sbjct: 378 FDESELQILRQMGDMFLGAYEASKMKSRIERNENLLATTELIAKSGSWRYNVHRKMFHFS 437

Query: 376 -------------------------SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
                                          + +   R   T +  ++   T++   + +
Sbjct: 438 GGLAYMFGLGNKPTYAKFSTMIYKIDKPFRKEFITNLRETITSLQTTSGEFTMKSPEDKN 497

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470
           + + +     +      +   GI  +    +  + ++ ++      IL    D I + + 
Sbjct: 498 VIINYEIDVPSGGMGHQIEVVGICTDVTHKKATEEQLVLQSQ----ILAQVKDPIVVTDL 553

Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530
           E  ++  N A  KL    V D+ +     F E          +   +        +    
Sbjct: 554 EQELIYANEAALKLCDKTVNDVCKGKIAEFFEFENHEEKLEEIIPKIEEGN--IWQDEVN 611

Query: 531 GSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
              K  K     + IK +         YSL + ++SE            +  +  +  K 
Sbjct: 612 LKIKGNKAEPFEVSIKAIHSDQNQKIGYSLVLQNLSEK----------YEAKKLANRAKM 661



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 39/265 (14%), Positives = 81/265 (30%), Gaps = 18/265 (6%)

Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDD------IEIAGGLSTLLDAPKLSDNN 379
            D+   P F+     + + N  F    +  S          E+   L T  ++ +L+   
Sbjct: 13  FDQMSEPLFMIDSEEIIFFNKYFHSNYELISDQWQSFIDYPEVRKSLKTYFESGELTQ-- 70

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
                 L       +     L  +  + +N   +                          
Sbjct: 71  INFFKSLKSLSGDFLLFEWSLIALPSSYQNRFVIV---------KGARSKFYSESMLVQT 121

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
               ++  +  +  L SIL  T D I I++ EG       +V +  G+ VEDI+ K F  
Sbjct: 122 PENAEKNAKYNLHFLESILNNTHDLITILDSEGNYKFIGPSVGQKLGFKVEDIVGKNFQD 181

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI-IIKKLPFSSCYSLTM 558
           F++     ++       L  +    ++       ++ K +      +   P       + 
Sbjct: 182 FIDAGIIELVKGDFESALQSEEEVNIDFWVHREGEKSKYIESFAKNLLHNPQIQGVIFSA 241

Query: 559 HDISEWKQEKNKLSHAKKIAEKESS 583
            DI+++ Q    L     +    + 
Sbjct: 242 RDITDYVQTDFSLQKRFDLENMINK 266


>gi|229175296|ref|ZP_04302811.1| hypothetical protein bcere0006_43760 [Bacillus cereus MM3]
 gi|228608128|gb|EEK65435.1| hypothetical protein bcere0006_43760 [Bacillus cereus MM3]
          Length = 545

 Score =  367 bits (941), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 92/388 (23%), Positives = 179/388 (46%), Gaps = 26/388 (6%)

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           +           +   + +  +E E    +L +++E    G+ +I+  G I   NR+  +
Sbjct: 174 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 233

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542
            F    E+ L + +           +   + EI   +++   + +  LG  ++   +   
Sbjct: 234 TFHVTDEEYLDRLYYESFHHT---EIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 290

Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
            II          L  HDI+E K+ +                + DFLA VSHE++TP+T+
Sbjct: 291 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 336

Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           I GFSE + +   G + N ++ E + + I +    +  ++ DLLD+SKIE     L    
Sbjct: 337 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLSMGT 393

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           V +   + +   ++   A EK I ++ +    +  ++ D   +KQI +N+++NAI +TP+
Sbjct: 394 VDMKGLLEDIRMVLDNKAGEKEISLQVNALKGV-SVIGDPSRLKQIFINLMNNAIVYTPA 452

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           GG + +           ++V DTG+G++  E+ +  + F ++  ++     GTGLGL + 
Sbjct: 453 GGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIV 511

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           K +V+A+ G   + S   +GT   ++ P
Sbjct: 512 KHLVEAHHGTITVDSEVGEGTTFTVVLP 539


>gi|126662135|ref|ZP_01733134.1| multi-sensor hybrid histidine kinase [Flavobacteria bacterium BAL38]
 gi|126625514|gb|EAZ96203.1| multi-sensor hybrid histidine kinase [Flavobacteria bacterium BAL38]
          Length = 1562

 Score =  367 bits (941), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 100/517 (19%), Positives = 206/517 (39%), Gaps = 17/517 (3%)

Query: 300  FEYLSHRNHPSLSAYFDEGENLTPETVD-KCPIPFFVYSHGNLFYANPSFLLLTKYKSVD 358
            ++Y    N        ++ E       +        + S GN+ + N     +  +KS +
Sbjct: 790  WKYTDITNRVKSQLLLEQSEERNRLITESALNAIINIDSSGNIIFWNKQAEEIFGWKSEE 849

Query: 359  DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
             I        ++     + +       +   +   +     L  ++ +      +     
Sbjct: 850  VIGKKL-QDNIIPIQHRAGHADGLKRYIECGEGPALNKLLELPAVKKDGTE---VLLEMA 905

Query: 419  EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
                +  + +       +  + +  + +++ +  +  +I+   + G+  ++   +I   N
Sbjct: 906  IIPIKQGDELFFCSFIQDISERKKAENQLKFQEKKYRNIIANMNLGMIEVDNNDLIQFAN 965

Query: 479  RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
            ++   + G+  ++++ K  T     +    +     E+ S       +   +    E + 
Sbjct: 966  QSFCNISGFDRDELIGKNPTSIFVDDENKKIIDSKKELRSQGNSDLYQIPVINKKGESRW 1025

Query: 539  LSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
             ++                    DI++ K  + +L   K+ A   S  K  FL+ +SHEI
Sbjct: 1026 WAISGAPNYDENGQLIGTIGIHLDITDQKLLEIELEKEKQRAINASKAKEVFLSTMSHEI 1085

Query: 597  RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
            RTPL AIIGF      +      +     Y      + + +L I+ND+LDISKIESG+M 
Sbjct: 1086 RTPLNAIIGF----LRELSKHTTSQEQKIYLENSTIASSHLLSIINDVLDISKIESGEME 1141

Query: 657  LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNA 715
            L      L  +V + ++++++ A EK + ++++F + I  +L  D   ++QI  N++ N+
Sbjct: 1142 LESNNFDLKHSVEKVVTILEVKAKEKGLELKSNFNSGISNLLLGDSFRIEQILYNLIGNS 1201

Query: 716  IHFTPSGGQIIISTTH----TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
            + FT  G  I +           +E+++ + DTG+G+    LE     F Q       + 
Sbjct: 1202 LKFTIEGS-IYVQCDLIQDFEEEQELLISISDTGIGIEESYLETIFTKFSQEEKDTSRKF 1260

Query: 772  EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
             GTGLG+ + K +VD   G   I S    GT I +  
Sbjct: 1261 GGTGLGMAITKELVDLMRGNITIESKKNTGTKITVFL 1297



 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/256 (14%), Positives = 85/256 (33%), Gaps = 17/256 (6%)

Query: 333 FFVYSHGNLFYANPSFLLLTKYK-SVDDIEIAGGLSTLLDAPKL---SDNNAIKPVMLYR 388
            F   +  + +AN  F  L     S + +        +++A KL   S+    +   +  
Sbjct: 695 VFEDENNIILFANQLFCDLFTISASPESLIGLDCEDCMMNAKKLFVESEEFTERIFDILN 754

Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
                +     ++   +   + + +            +         +  +   ++  +E
Sbjct: 755 KKEIVVNEIIEMNNGIFLERDYVPLFIN--------NKYKGHLWKYTDITNRVKSQLLLE 806

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF-TVFLEQNTPS 507
               +   I E+  + I  I+  G I+  N+   ++FG+  E+++ K      +     +
Sbjct: 807 QSEERNRLITESALNAIINIDSSGNIIFWNKQAEEIFGWKSEEVIGKKLQDNIIPIQHRA 866

Query: 508 VMNHYLTEILSLDLRQTLEK--ITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISE 563
                L   +       L K        K+   + L + I  +       +   + DISE
Sbjct: 867 GHADGLKRYIECGEGPALNKLLELPAVKKDGTEVLLEMAIIPIKQGDELFFCSFIQDISE 926

Query: 564 WKQEKNKLSHAKKIAE 579
            K+ +N+L   +K   
Sbjct: 927 RKKAENQLKFQEKKYR 942



 Score = 46.9 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/174 (10%), Positives = 54/174 (31%), Gaps = 11/174 (6%)

Query: 88   NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI----GDLLKRQNTW 143
             +D +  ++  ++      G    ++IG     +      D N  I     +L  + N+ 
Sbjct: 954  EVDNNDLIQFANQSFCNISGFDRDELIGKNPTSI---FVDDENKKIIDSKKELRSQGNSD 1010

Query: 144  YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
              +  +   +G + +  I  +  P Y  N +  G  G  +              ++  ++
Sbjct: 1011 LYQIPVINKKGESRWWAI--SGAPNYDENGQLIGTIGIHL--DITDQKLLEIELEKEKQR 1066

Query: 204  FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257
              +  + K+   S    +              +    +S  +    ++  + + 
Sbjct: 1067 AINASKAKEVFLSTMSHEIRTPLNAIIGFLRELSKHTTSQEQKIYLENSTIASS 1120



 Score = 41.9 bits (97), Expect = 0.41,   Method: Composition-based stats.
 Identities = 26/185 (14%), Positives = 53/185 (28%), Gaps = 27/185 (14%)

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-- 487
              +          +  ++ +     ++L     GI   +   IIL  N+    LF    
Sbjct: 659 FAQMISNVDQRHKVESDLKYKNELQKTLLSNIQSGIVFEDENNIILFANQLFCDLFTISA 718

Query: 488 PVEDILRKPFTVFLEQN-----TPSVMNHYLTEILSLDLRQTLEKITL--GSTKEEKLLS 540
             E ++       +                + +IL+       E I +  G   E   + 
Sbjct: 719 SPESLIGLDCEDCMMNAKKLFVESEEFTERIFDILNKKEIVVNEIIEMNNGIFLERDYVP 778

Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
           L I          +     DI+   + +  L    + +E+ +   ++            L
Sbjct: 779 LFIN----NKYKGHLWKYTDITNRVKSQLLL----EQSEERNRLITESA----------L 820

Query: 601 TAIIG 605
            AII 
Sbjct: 821 NAIIN 825


>gi|94263977|ref|ZP_01287779.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93455649|gb|EAT05831.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 1211

 Score =  367 bits (941), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 123/582 (21%), Positives = 228/582 (39%), Gaps = 40/582 (6%)

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH-----------PS 310
           L + +    +   +  +  +    +     +++        L   N              
Sbjct: 86  LANPDHPFDQVVRYRHLKGHTVWVRCRGLAIRDKQGRPIRMLGAHNDITEYKQQQLALEE 145

Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYSHGN---LFYANPSFLLLTKYKSVDDIEIAGGLS 367
             A   + E+     V+  P+  +         + +A+ +   L  Y S + +       
Sbjct: 146 AQATLRQSEDKYRTLVENLPVLIYRSEVDAPWAMLHASQNAEQLCGYSSDEFLSGQLTWV 205

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
            ++ A  L    A     +   ++  +    R                   +  +Q    
Sbjct: 206 DVIVAEDLPLVEAAVQHAIKAREKYTVEYRIR----HQKGHVIWVSETGSAQDYDQNGHP 261

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFG 486
              +G+  +  D    ++++  +  +   + E +  GIA+ +   G  L  N AV++  G
Sbjct: 262 AYLDGVIADITDRVQAQKEISAQEAKFRGLFELSPVGIAMNDFATGEFLEFNAAVNEPAG 321

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
           Y  E+  +  +               L  +  +      EK  +   K+     + +   
Sbjct: 322 YTPEEFKQLSYFDVTPMEYMEDEKRQLESMEKIGRYGPFEKEYI--RKDGSRYPVLLNGF 379

Query: 547 KLPFSSC---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
           K             + DISE       +  A++ AE  +  KS+FLA +SHEIRTP+ AI
Sbjct: 380 KTTTPEGKTVIWSIIQDISE-------IKKAQEAAEAANRSKSEFLANMSHEIRTPMNAI 432

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           IG  ++    +  P   PR  +Y   I  S   +L ++ND+LD SKIE+GK+ +   P  
Sbjct: 433 IGLGQLALKSQ--PPPPPRLYDYLEKITGSAATLLTLINDILDFSKIEAGKLAIDQVPFD 490

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSG 722
           L E +++   L+   A EK + +  +    +PR+L  D   + Q+ +N+ +NAI FT +G
Sbjct: 491 LSEILNQLDHLMAGQAAEKGLELLFAVDPTVPRLLVGDPHRLGQVLINLTANAIKFTETG 550

Query: 723 GQIIISTTHTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
            ++ IS            + + VRDTG+GM+  ++E+  +PF Q   +   +  GTGLGL
Sbjct: 551 -EVTISFEVVDPTAEPLTLRVAVRDTGIGMSPEQIERIFQPFTQADGATTRKHGGTGLGL 609

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820
            +A  +V    G+  + STP  G+       L     PH  +
Sbjct: 610 SIAGRLVKLLGGEIRVESTPGAGSTFSFTC-LLGRHEPHKAL 650



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/386 (6%), Positives = 70/386 (18%), Gaps = 37/386 (9%)

Query: 98  ISEELPKTIGNYAFK--MIGMRLCDVSDILHIDPNNH-IGDLLKRQN-TWYGKTTLWPIE 153
           +S +  + +G        +     D+ +   +      +   L   +  +        ++
Sbjct: 44  MSPKFWQILGYDPSTKQHLSSEWQDIINQDDLKATTENLEKHLANPDHPFDQVVRYRHLK 103

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
           G    V +    L I  +       R  G  +        +   +          +  + 
Sbjct: 104 GHT--VWVRCRGLAIRDKQGRPI--RMLGAHNDITEYKQQQLALEEAQATLRQSEDKYRT 159

Query: 214 HSSVEKEKYDIFSQQSPPPHLRMKNKVSSL---------------TEYYAHKDDVLKTEK 258
                          +P   L        L                +    +D  L    
Sbjct: 160 LVENLPVLIYRSEVDAPWAMLHASQNAEQLCGYSSDEFLSGQLTWVDVIVAEDLPLVEAA 219

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL-----SHRNHPSLSA 313
                        +        +     +       +      YL        +      
Sbjct: 220 VQHAIKAREKYTVEYRIRHQKGHVIWVSETGSAQDYDQNGHPAYLDGVIADITDRVQAQK 279

Query: 314 YFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
                E       +  P+   +     G     N +      Y   +       LS    
Sbjct: 280 EISAQEAKFRGLFELSPVGIAMNDFATGEFLEFNAAVNEPAGYTPEE----FKQLSYFDV 335

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS-LAMTFIPFEKANQFPENMPQ 430
            P     +  + +                  I+ +     + +                 
Sbjct: 336 TPMEYMEDEKRQLESMEKIGRYGPFEKEY--IRKDGSRYPVLLNGFKTTTPEGKTVIWSI 393

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCS 456
                E    +           +  +
Sbjct: 394 IQDISEIKKAQEAAEAANRSKSEFLA 419



 Score = 42.7 bits (99), Expect = 0.23,   Method: Composition-based stats.
 Identities = 26/206 (12%), Positives = 69/206 (33%), Gaps = 11/206 (5%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMI-GM-RLCDVSDILHI-DPNNHIGDLLKRQNTWY 144
            +DA   +   S+   +  G  + + + G     DV     +      +   +K +  + 
Sbjct: 172 EVDAPWAMLHASQNAEQLCGYSSDEFLSGQLTWVDVIVAEDLPLVEAAVQHAIKAREKYT 231

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            +  +   +G  ++V    +A   Y +N   +   G  ++         +      + KF
Sbjct: 232 VEYRIRHQKGHVIWVSETGSAQ-DYDQNGHPAYLDG--VIADITDRVQAQKEISAQEAKF 288

Query: 205 SHLHEIKKGHSSVEK-EKYDIFSQQSP--PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
             L E+     ++      +     +    P      +   L+ +     + ++ EK  L
Sbjct: 289 RGLFELSPVGIAMNDFATGEFLEFNAAVNEPAGYTPEEFKQLSYFDVTPMEYMEDEKRQL 348

Query: 262 LTSE--ESSLPEQEDFHTINLNQYTK 285
            + E      P ++++   + ++Y  
Sbjct: 349 ESMEKIGRYGPFEKEYIRKDGSRYPV 374


>gi|228987835|ref|ZP_04147944.1| hypothetical protein bthur0001_45030 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228771883|gb|EEM20340.1| hypothetical protein bthur0001_45030 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 558

 Score =  366 bits (940), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 92/388 (23%), Positives = 179/388 (46%), Gaps = 26/388 (6%)

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           +           +   + +  +E E    +L +++E    G+ +I+  G I   NR+  +
Sbjct: 187 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 246

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542
            F    E+ L + +           +   + EI   +++   + +  LG  ++   +   
Sbjct: 247 TFHVTDEEYLDRLYYESFHH---PEIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 303

Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
            II          L  HDI+E K+ +                + DFLA VSHE++TP+T+
Sbjct: 304 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 349

Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           I GFSE + +   G + N ++ E + + I +    +  ++ DLLD+SKIE     L    
Sbjct: 350 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLSMGT 406

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           V +   + +   ++   A EK I ++ +    +  ++ D   +KQI +N+++NAI +TP+
Sbjct: 407 VDMKGLLEDIHMVLDNKAGEKEISLQVNALKRV-SVIGDPSRLKQIFINLMNNAIVYTPA 465

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           GG + +           ++V DTG+G++  E+ +  + F ++  ++     GTGLGL + 
Sbjct: 466 GGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIV 524

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           K +V+A+ G   + S   +GT   ++ P
Sbjct: 525 KHLVEAHHGTITVDSEVGEGTTFTVVLP 552


>gi|325914780|ref|ZP_08177118.1| PAS domain S-box [Xanthomonas vesicatoria ATCC 35937]
 gi|325539057|gb|EGD10715.1| PAS domain S-box [Xanthomonas vesicatoria ATCC 35937]
          Length = 1364

 Score =  366 bits (940), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 136/723 (18%), Positives = 260/723 (35%), Gaps = 51/723 (7%)

Query: 139 RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFR-----GFGIV----HVNRV 189
             N   G             +    +  PI +     SG+R     GF ++         
Sbjct: 160 SGNRPIGLDIASEPRRRAAALQAARSGEPIMTSPVSLSGYRVPSESGFLVLLPVYREGMP 219

Query: 190 DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDI-FSQQSPPPHLRMKNKVSSLTEYYA 248
              P+      +        +++   S   E+ D+               +    T   A
Sbjct: 220 LQTPQQRMAATNGWVYAPFAVEQMVQSALGERSDVALDLSDRNEPTHNFYRSGIPTGASA 279

Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
               V++       T   ++ P      ++N              +    +   L   N 
Sbjct: 280 RWRPVVQLLPIYGRTWIITAHPTASFVASLNQTSPWLVGGLVMAASVLLAALLALYFSNG 339

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDI-------- 360
                   +   L                 G + + NP+  ++  Y + D I        
Sbjct: 340 LRREEVLRKQMELAALVSHSSEAIVAETPDGRITHWNPAAEVMFGYTAEDAIDQDLTLLL 399

Query: 361 -EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
                 +  +         NA     +   D   +   A    I       L+     F 
Sbjct: 400 SPQPYAMPQIDHTDDALPPNASAAQSMRHRDGHHVHVLASKAPIIEPDGT-LSGHSHFFR 458

Query: 420 KANQFPENMPQNGIEPEDVDTRINKR--KMEIEVMQLCSILEATSDGIAIINREGIILST 477
             ++   +  +       ++ ++ +R  ++    +   +IL      I   +  G +   
Sbjct: 459 DISERVRSHQRIVDLNASLEHQVAERTSELVKFSVLQRAILAHAGYAIIATDSSGFVTLF 518

Query: 478 NRAVSKLFGYPVEDILRKP-FTVFLEQNTPSVMNHYLTEILSLDLRQTLEK--------- 527
           NRA  KL GY  ED++ +   + F+E        H L+E   + + QTLE          
Sbjct: 519 NRAAEKLLGYNAEDVIGRRKASQFVEPEELQDRAHLLSEQTGVPVAQTLEAVAALTSLGR 578

Query: 528 ----ITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAE 579
                    + + + L + + +  L   +     Y     D++E K  + +L  A   A+
Sbjct: 579 SDTSEWTYVSHDGRRLPVLLTLSTLRDDNDQVIGYLGVAVDLTEQKMHEKQLRLAMDAAK 638

Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639
             +  KSDFLA +SHEIRTP+ AI+G   +++             +    IDRS   +L+
Sbjct: 639 SANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSELPGAA----QDMVTKIDRSARTLLE 694

Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS-FANNIPRIL 698
           I+ND+LD SKIE+G+++L   P  L++       L++   + K + +       +   +L
Sbjct: 695 IINDILDFSKIEAGRIDLERAPFDLNQLFDNIADLMRSSLSAKPVEMIVEPLPRDSRWLL 754

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-----VILRVRDTGVGMTNYEL 753
            D   + Q+ +N++ NAI FT  G ++++S     + +     ++  VRDTG+G++  + 
Sbjct: 755 GDALRINQVLVNLVGNAIKFTEQG-EVVLSVRRFPSGDPNKVKLLFSVRDTGIGISKEKQ 813

Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
                PF Q   S   R  G+GLGL +++ +++   G+  + S P +G+    +  L   
Sbjct: 814 SLIFSPFLQADTSTSRRYGGSGLGLTISRRLIELMGGELEVESVPGRGSEFYFVVTLEKA 873

Query: 814 SHP 816
           + P
Sbjct: 874 ASP 876



 Score = 83.9 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 50/442 (11%), Positives = 115/442 (26%), Gaps = 55/442 (12%)

Query: 169 YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228
               REF G  G+G +H  RV     A   +  +        ++  +  + E+Y +   +
Sbjct: 99  RDYAREFPGVLGYGYIH--RVAPADEAAFLQTARADGAPDIHRRLLAPWDGERYIVLYFE 156

Query: 229 SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288
                 R      +                 P++TS  S    +    +  L      + 
Sbjct: 157 PESSGNRPIGLDIASEPRRRAAALQAARSGEPIMTSPVSLSGYRVPSESGFLVLLPVYRE 216

Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSF 348
              LQ   +           P                V++                    
Sbjct: 217 GMPLQTPQQRMAATNGWVYAPFA--------------VEQMVQSALGERSDVAL------ 256

Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
                     D+      +       +    + +   +       +    R   I  +  
Sbjct: 257 ----------DLSDRNEPTHNFYRSGIPTGASARWRPVV----QLLPIYGRTWIITAHPT 302

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDT----RINKRKMEIEVMQLCSILEATSDG 464
            S   +             M  + +    +       + + ++  + M+L +++  +S+ 
Sbjct: 303 ASFVASLNQTSPWLVGGLVMAASVLLAALLALYFSNGLRREEVLRKQMELAALVSHSSEA 362

Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
           I     +G I   N A   +FGY  ED + +  T+ L           +           
Sbjct: 363 IVAETPDGRITHWNPAAEVMFGYTAEDAIDQDLTLLLSP--QPYAMPQIDHTDDALPPNA 420

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEK 580
               ++   ++   + +      +               DISE  +   ++       E 
Sbjct: 421 SAAQSM-RHRDGHHVHVLASKAPIIEPDGTLSGHSHFFRDISERVRSHQRIVDLNASLEH 479

Query: 581 ESSHKSDFL--------ARVSH 594
           + + ++  L        A ++H
Sbjct: 480 QVAERTSELVKFSVLQRAILAH 501



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/386 (8%), Positives = 85/386 (22%), Gaps = 34/386 (8%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLC-----------DVSDILHIDPNNHIGDLLKR 139
             G +   +       G  A   I   L             +       P N        
Sbjct: 368 PDGRITHWNPAAEVMFGYTAEDAIDQDLTLLLSPQPYAMPQIDHTDDALPPNASAAQ--- 424

Query: 140 QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199
                   ++   +G +++  +  +  PI   +   SG   F                  
Sbjct: 425 --------SMRHRDGHHVH--VLASKAPIIEPDGTLSGHSHF--FRDISERVRSHQRIVD 472

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
           L+    H  ++ +  S + K      +  +   +  +    S     +    + L     
Sbjct: 473 LNASLEH--QVAERTSELVKFSVLQRAILAHAGYAIIATDSSGFVTLFNRAAEKLLGYNA 530

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
             +     +    E     +      +Q    +    +      S     +    +   +
Sbjct: 531 EDVIGRRKASQFVEPEELQDRAHLLSEQTGVPVAQTLEAVAALTSLGRSDTSEWTYVSHD 590

Query: 320 NLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
                 +           +  +       + LT+ K  +        +        SD  
Sbjct: 591 GRRLPVLLTLST--LRDDNDQVIGYLGVAVDLTEQKMHEKQLRLAMDAAKSANQSKSDFL 648

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
           A     +       +     L   +        +T I           +       +   
Sbjct: 649 ANMSHEIRTPMNAILGMLYLLQRSELPGAAQDMVTKID----RSARTLLEIINDILDFSK 704

Query: 440 TRINKRKMEIEVMQLCSILEATSDGI 465
               +  +E     L  + +  +D +
Sbjct: 705 IEAGRIDLERAPFDLNQLFDNIADLM 730



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/284 (9%), Positives = 67/284 (23%), Gaps = 25/284 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMR----------LCDVSDILHIDPNNHIGDLLK 138
            D+ G++   +    K +G  A  +IG R          L D + +L       +   L+
Sbjct: 509 TDSSGFVTLFNRAAEKLLGYNAEDVIGRRKASQFVEPEELQDRAHLLSEQTGVPVAQTLE 568

Query: 139 RQNTW----YGKTTLW-PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193
                       T+ W  +      +P+ L    +   N +  G+ G  +          
Sbjct: 569 AVAALTSLGRSDTSEWTYVSHDGRRLPVLLTLSTLRDDNDQVIGYLGVAV--DLTEQKMH 626

Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253
               +         ++ K    +    +              ++                
Sbjct: 627 EKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSELPGAAQDMVTKID 686

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ-------YFGTLQNNSKESFEYLSHR 306
                   + ++     + E    I+L +                  + S +  E +   
Sbjct: 687 RSARTLLEIINDILDFSKIEAGR-IDLERAPFDLNQLFDNIADLMRSSLSAKPVEMIVEP 745

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLL 350
                     +   +    V+           G +  +   F  
Sbjct: 746 LPRDSRWLLGDALRINQVLVNLVGNAIKFTEQGEVVLSVRRFPS 789


>gi|209526710|ref|ZP_03275233.1| multi-sensor signal transduction histidine kinase [Arthrospira
           maxima CS-328]
 gi|209492842|gb|EDZ93174.1| multi-sensor signal transduction histidine kinase [Arthrospira
           maxima CS-328]
          Length = 856

 Score =  366 bits (940), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 111/587 (18%), Positives = 203/587 (34%), Gaps = 41/587 (6%)

Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
            +   +                     + +N N          L       F   +    
Sbjct: 275 QRGTAIAHLLTATFAVWGVLRGSGPFMNNLNENPQVFSLQAFILVMTVTGLFLAGAVEER 334

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY-ANPSFLLLTKYKSVDDIEIAGGLS 367
            ++ A    GE           +  +      L    +     +              L 
Sbjct: 335 QTVEASLRSGEASLATAQRIAKLGHWELDIPQLTCTWSDQLYRIFGVNPQQVTPSIDSLM 394

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
             +               + ++    I  S      + + +    +              
Sbjct: 395 QYIHHQDRPRVENA----ISQAISEQIPYSIDYRIARPDGQERFVV-------EQAIVTP 443

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFG 486
                   +  + +  +  +     +   + +A+  GI+I    EG  +  N +  +  G
Sbjct: 444 THITSTVQDITERKRAEIALRASEERFSRVFKASPIGISITTVEEGRFVDVNDSFLQQLG 503

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
           +  E ++ + F    E      +N  L  I + D    L       +   +   + I   
Sbjct: 504 WSREQVIDRTFEDL-EMWDAEQINPILQRITNGDRLSNLTVQVRHKSGAIRDWLIAIEPI 562

Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
           +L  + C  +   DI+E KQ + +L  AK+ AE+ +  KS FLA +SHE+RTPL AI+G+
Sbjct: 563 QLENTPCLLILASDITEHKQAE-ELRRAKEAAEQANQAKSLFLANMSHELRTPLNAILGY 621

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
           SE +  +    LG   ++     I  +G  +L +++D+LD SKIE+G+MN H E   ++ 
Sbjct: 622 SE-LLQEDAEDLGQDDWVADLKNIHVAGQHLLTLISDILDFSKIEAGRMNFHLEKCQINT 680

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726
            + E  + +   A++         A  +  +  DL  V+Q  LN+LSNA  FT  G Q+ 
Sbjct: 681 LLWEVETTIAPLADKNHNQFTLEVAPGLDLMYTDLTKVRQSLLNLLSNACKFTEQG-QVT 739

Query: 727 ISTTHT------------------------SNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
           +                                 +  +V+D G+GM   ++     PF Q
Sbjct: 740 LRVWKQLIPATDLPDLPVYHSLESPEEELSEIPFIFFQVQDHGIGMNERQIATVFSPFTQ 799

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
              S   +  GTGLGL +   +     G  ++ S   KG+   +  P
Sbjct: 800 ADESTTRKYGGTGLGLSITHKLCQMMGGDLWVESELNKGSTFTMRLP 846



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/306 (11%), Positives = 72/306 (23%), Gaps = 26/306 (8%)

Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH-------EIKKGHSSVEKEKYDIFS 226
             +G    G V   +        G+        +        +I +   +   + Y IF 
Sbjct: 321 TVTGLFLAGAVEERQTVEASLRSGEASLATAQRIAKLGHWELDIPQLTCTWSDQLYRIFG 380

Query: 227 QQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKK 286
                   ++   + SL +Y  H+D            SE+            +  +    
Sbjct: 381 VNP----QQVTPSIDSLMQYIHHQDRPRVENAISQAISEQIPYSIDYRIARPDGQERFVV 436

Query: 287 QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY--SHGNLFYA 344
           +    +   +  +                   E          PI   +     G     
Sbjct: 437 EQ--AIVTPTHITSTVQDITERKRAEIALRASEERFSRVFKASPIGISITTVEEGRFVDV 494

Query: 345 NPSFLLLTKYKSVDDIEI---------AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIA 395
           N SFL    +     I+          A  ++ +L      D  +   V +         
Sbjct: 495 NDSFLQQLGWSREQVIDRTFEDLEMWDAEQINPILQRITNGDRLSNLTVQVRHKSGAIRD 554

Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
               +  IQ      L +      +  Q  E         +    +     +     +L 
Sbjct: 555 WLIAIEPIQLENTPCLLILASDITEHKQAEELRRAKEAAEQANQAKS--LFLANMSHELR 612

Query: 456 SILEAT 461
           + L A 
Sbjct: 613 TPLNAI 618



 Score = 42.7 bits (99), Expect = 0.24,   Method: Composition-based stats.
 Identities = 12/116 (10%), Positives = 32/116 (27%), Gaps = 8/116 (6%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151
            G   ++++   + +G    ++I     D+      +  N I   +   +     T    
Sbjct: 488 EGRFVDVNDSFLQQLGWSREQVIDRTFEDLEM-WDAEQINPILQRITNGDRLSNLTVQVR 546

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVH-VNRVDNDPRALGKRLDKKFSH 206
            +   +   + +A  PI     +        I+            L +  +     
Sbjct: 547 HKSGAIRDWL-IAIEPI-----QLENTPCLLILASDITEHKQAEELRRAKEAAEQA 596


>gi|325925062|ref|ZP_08186484.1| PAS domain S-box [Xanthomonas perforans 91-118]
 gi|325544574|gb|EGD15935.1| PAS domain S-box [Xanthomonas perforans 91-118]
          Length = 1364

 Score =  366 bits (940), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 129/706 (18%), Positives = 254/706 (35%), Gaps = 65/706 (9%)

Query: 164 AALPIYSRNREFSGFR-----GFGIV----HVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214
           +  P+ +     SG+R     GF ++            P+               +++  
Sbjct: 185 SGEPVMTSPISLSGYRVPSESGFLVLLAVYREGMPLQTPQQRMLATSGWVYAPFSVEQMV 244

Query: 215 SSVEKEKYDI-FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE 273
            S   E+ D+               +  +     A +  V++       T   ++ P   
Sbjct: 245 RSALGERDDVALDLSDRNEPTHNFYRSGTPASDSALRPPVVRLLPIYGRTWVITAHPTAG 304

Query: 274 DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF 333
              ++N +                 +   L   N         +   L            
Sbjct: 305 FVASLNQSSPWLIGGLVMAAAVLFAALLVLYFSNGLRREEVLRKQMELAALVSHSSEAIV 364

Query: 334 FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393
                G + + NP+   +  Y + + I+    L+ LL     +            +D   
Sbjct: 365 AETPDGRITHWNPAAEAMFGYTADEAIDQ--DLTMLLSPQPYAMPEVD------HADAAL 416

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK------- 446
              ++   T++    + + +                 +    +  D   + ++       
Sbjct: 417 AGNASAAQTMRHRDGHQVHVLASKAPIIESEGTLSGHSHFFRDISDRVRSHQRIIDLNAS 476

Query: 447 MEIEVMQ-----------LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
           +E +V +             +IL      I  I+  G +   N A  KL GY   +++ +
Sbjct: 477 LEHQVAERTSELVKFSVLQRAILAHAGYAIIAIDSSGFVTLFNPAAEKLLGYSAAEVIGR 536

Query: 496 P-FTVFLEQNTPSVMNHYLTEILSLDLRQTLEK-------------ITLGSTKEEKLLSL 541
              + F+E        H L E     +  TLE                   + + + L +
Sbjct: 537 RKASQFVEPEELQERAHMLAEQTGTPVAHTLEAIAALTSLGRSDTSEWTYVSHDGRRLPV 596

Query: 542 RIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
            + +  L         Y     D++E K  + +L  A   A+  +  KSDFLA +SHEIR
Sbjct: 597 LLTLSTLRDDHDQVIGYLGVAVDLTEQKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIR 656

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TP+ AI+G   +++             +    IDRS   +L+I+ND+LD SKIE+G+++L
Sbjct: 657 TPMNAILGMLYLLQRSELPGAA----QDMVAKIDRSARTLLEIINDILDFSKIEAGRIDL 712

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTS-FANNIPRILADLRSVKQIALNILSNAI 716
              P  L++       L++   + K + +       +   +L D   + Q+ +N++ NAI
Sbjct: 713 ECAPFDLNQLFDNIADLMRSSLSAKPVEMIVEPLPRDSRWLLGDALRINQVLVNLVGNAI 772

Query: 717 HFTPSGGQIIISTTHTSNEE-----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
            FT  G ++++S     + +     ++  VRDTG+G++  +      PF Q   S   R 
Sbjct: 773 KFTEQG-EVVLSVRRFPSGDPNKFKLLFSVRDTGIGISKEKQSVIFSPFLQADTSTSRRY 831

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
            G+GLGL +++ +V+   G+  + S P +G+    +  L  ++ P 
Sbjct: 832 GGSGLGLTISRRLVELMGGELEVESVPGRGSEFYFVVTLEKSAPPQ 877



 Score = 86.6 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 52/442 (11%), Positives = 126/442 (28%), Gaps = 55/442 (12%)

Query: 169 YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228
               REF G  G+G +H  RV     A   +  +        ++  +  + E+Y +   +
Sbjct: 99  RDYPREFPGVLGYGYIH--RVAPADEAAFLQAARADGAPDIHRRPLAPWDGERYMVLYFE 156

Query: 229 SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288
                 R      +                 P++TS  S    +    +  L      + 
Sbjct: 157 PESSGNRPLGIDIASEPRRRAAALQAARSGEPVMTSPISLSGYRVPSESGFLVLLAVYRE 216

Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSF 348
              LQ   +                                    +VY+  ++     S 
Sbjct: 217 GMPLQTPQQRMLATSG-----------------------------WVYAPFSVEQMVRSA 247

Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
           L      ++D  +          +   + ++A++P ++       +    R   I  +  
Sbjct: 248 LGERDDVALDLSDRNEPTHNFYRSGTPASDSALRPPVVR-----LLPIYGRTWVITAHPT 302

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDT----RINKRKMEIEVMQLCSILEATSDG 464
                +             M    +    +       + + ++  + M+L +++  +S+ 
Sbjct: 303 AGFVASLNQSSPWLIGGLVMAAAVLFAALLVLYFSNGLRREEVLRKQMELAALVSHSSEA 362

Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
           I     +G I   N A   +FGY  ++ + +  T+ L           +    +      
Sbjct: 363 IVAETPDGRITHWNPAAEAMFGYTADEAIDQDLTMLLSP--QPYAMPEVDHADAALAGNA 420

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEK 580
               T+   ++   + +      +  S            DIS+  +   ++       E 
Sbjct: 421 SAAQTM-RHRDGHQVHVLASKAPIIESEGTLSGHSHFFRDISDRVRSHQRIIDLNASLEH 479

Query: 581 ESSHKSDFL--------ARVSH 594
           + + ++  L        A ++H
Sbjct: 480 QVAERTSELVKFSVLQRAILAH 501



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/376 (9%), Positives = 85/376 (22%), Gaps = 14/376 (3%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI-LHIDPNNHIGDLLKRQNTWYGKTTL 149
             G +   +       G  A + I   L  +     +  P     D     N    +T  
Sbjct: 368 PDGRITHWNPAAEAMFGYTADEAIDQDLTMLLSPQPYAMPEVDHADAALAGNASAAQTMR 427

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
              +G  ++  +  +  PI       SG   F                  L+    H  +
Sbjct: 428 -HRDGHQVH--VLASKAPIIESEGTLSGHSHF--FRDISDRVRSHQRIIDLNASLEH--Q 480

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
           + +  S + K      +  +   +  +    S     +    + L       +     + 
Sbjct: 481 VAERTSELVKFSVLQRAILAHAGYAIIAIDSSGFVTLFNPAAEKLLGYSAAEVIGRRKAS 540

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
              E            +Q    + +  +      S     +    +   +      +   
Sbjct: 541 QFVEPEELQERAHMLAEQTGTPVAHTLEAIAALTSLGRSDTSEWTYVSHDGRRLPVLLTL 600

Query: 330 PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389
                   H  +       + LT+ K  +        +        SD  A     +   
Sbjct: 601 ST--LRDDHDQVIGYLGVAVDLTEQKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIRTP 658

Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449
               +     L   +        +  I           +       +       +  +E 
Sbjct: 659 MNAILGMLYLLQRSELPGAAQDMVAKID----RSARTLLEIINDILDFSKIEAGRIDLEC 714

Query: 450 EVMQLCSILEATSDGI 465
               L  + +  +D +
Sbjct: 715 APFDLNQLFDNIADLM 730



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/283 (9%), Positives = 69/283 (24%), Gaps = 23/283 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMR----------LCDVSDILHIDPNNHIGDLLK 138
           ID+ G++   +    K +G  A ++IG R          L + + +L       +   L+
Sbjct: 509 IDSSGFVTLFNPAAEKLLGYSAAEVIGRRKASQFVEPEELQERAHMLAEQTGTPVAHTLE 568

Query: 139 RQNTW----YGKTTLW-PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193
                       T+ W  +      +P+ L    +   + +  G+ G  +          
Sbjct: 569 AIAALTSLGRSDTSEWTYVSHDGRRLPVLLTLSTLRDDHDQVIGYLGVAV--DLTEQKLH 626

Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253
               +         ++ K    +    +              ++                
Sbjct: 627 EKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSELPGAAQDMVAKID 686

Query: 254 LKTEKYPLLTSEESSLPEQEDFH------TINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
                   + ++     + E           +LNQ           + S +  E +    
Sbjct: 687 RSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQLFDNIADLMRSSLSAKPVEMIVEPL 746

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLL 350
                    +   +    V+           G +  +   F  
Sbjct: 747 PRDSRWLLGDALRINQVLVNLVGNAIKFTEQGEVVLSVRRFPS 789


>gi|298530450|ref|ZP_07017852.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509824|gb|EFI33728.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 1162

 Score =  366 bits (940), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 100/549 (18%), Positives = 205/549 (37%), Gaps = 29/549 (5%)

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
                   + +   +   +        ++     L               + L   T+D 
Sbjct: 105 FGILVLSRSRSFEPFLINELLPLTAMLARACRSCLEVEKRRQAEEELSNSKALLEATLDS 164

Query: 329 CPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
            P    +    + +   N +          +      G        +    ++       
Sbjct: 165 IPDIIGIQKPDHTMIRYNQAGYDFLGLTPEE----VKGRKCYELIGRSVPCSSCTSARAV 220

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
           R+ R            ++       +  I     +             +    + +++K+
Sbjct: 221 RTGRQGFKEKYLPEYDRY-------LECISQPVFDSQGSVHLVVEQLRDITQRKRSEKKL 273

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
             +  Q  S+   TSD +   + +  I + N   +++FG+ +E++  +     ++     
Sbjct: 274 LTQKAQFESLFTNTSDAMVYFDADLKIFNVNTRFTEMFGHDLEEVRGRNIIDVVDPEGKE 333

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEW 564
                   +        +E      +++ +   + +    +              DIS+ 
Sbjct: 334 THYGAYRILAGEK----VEMECTRYSRDGEPREVLLKGGPVLVDGNITGGFAVYSDISQR 389

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           K  + ++  A+  AE+ S  KSDFLA +SHEIRTPL  ++    +++    GP       
Sbjct: 390 KNYEKEIIRARDAAEEASRAKSDFLANMSHEIRTPLNGVVSMMSLLEETSLGP----EQR 445

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           EY +    S   +L+I+ND+LD S+IE+G++ L  +   L+  +S  + L+   A  K +
Sbjct: 446 EYVDMATISSESLLNIINDILDFSRIEAGRLELTRQNFDLEREISRVMLLLTKRARSKEV 505

Query: 685 LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VIL 739
            +   +    PR +  D   ++QI  N++ NA+ FT  G  I++  +     E    + +
Sbjct: 506 ELLVDYDLQAPRRVRGDNLRLRQILYNLVGNAVKFTEKG-YILVQVSLAEAGEEKARLKI 564

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V+DTGVG+  +  EK  + F Q+  S   R  GTGLGL +++++V    G   + S   
Sbjct: 565 SVQDTGVGIPVHMQEKIFEHFTQVDYSSTRRHGGTGLGLAISRSLVRLMGGDLQVMSREG 624

Query: 800 KGTLIEIIF 808
           +G+      
Sbjct: 625 EGSTFFFEL 633



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 29/211 (13%), Positives = 62/211 (29%), Gaps = 10/211 (4%)

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
            A +   +     ++L   D    A   +   I     +     F+  E           
Sbjct: 75  LAREADTDGFQDWLLLQEQDSFHYAFRLQDFGILVLSRSRSFEPFLINELLPLTAMLARA 134

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490
                E    R  + ++      L + L++  D I I   +  ++  N+A     G   E
Sbjct: 135 CRSCLEVEKRRQAEEELSNSKALLEATLDSIPDIIGIQKPDHTMIRYNQAGYDFLGLTPE 194

Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
           ++  +     +   +    +      +    +   EK      +      L  I + +  
Sbjct: 195 EVKGRKCYELI-GRSVPCSSCTSARAVRTGRQGFKEKYLPEYDR-----YLECISQPVFD 248

Query: 551 SSC----YSLTMHDISEWKQEKNKLSHAKKI 577
           S          + DI++ K+ + KL   K  
Sbjct: 249 SQGSVHLVVEQLRDITQRKRSEKKLLTQKAQ 279



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/341 (12%), Positives = 92/341 (26%), Gaps = 23/341 (6%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           DA   +  ++    +  G+   ++ G  + DV D    + +     +L        + T 
Sbjct: 295 DADLKIFNVNTRFTEMFGHDLEEVRGRNIIDVVDPEGKETHYGAYRILA-GEKVEMECTR 353

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
           +  +G      + L   P+   +   +G  GF +        +      R          
Sbjct: 354 YSRDGEPRE--VLLKGGPVL-VDGNITG--GFAVYSDISQRKNYEKEIIRARDAAEEASR 408

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT-SEESS 268
            K    +    +          P   + + +S L E     +     +   + + S  + 
Sbjct: 409 AKSDFLANMSHEIR-------TPLNGVVSMMSLLEETSLGPEQREYVDMATISSESLLNI 461

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV-- 326
           + +  DF  I   +    +    L+         L+ R          + +   P  V  
Sbjct: 462 INDILDFSRIEAGRLELTRQNFDLEREISRVMLLLTKRARSKEVELLVDYDLQAPRRVRG 521

Query: 327 DKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
           D   +   +Y+  GN         +L +    +  E    L        + D     PV 
Sbjct: 522 DNLRLRQILYNLVGNAVKFTEKGYILVQVSLAEAGEEKARL-----KISVQDTGVGIPVH 576

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
           +               + + +    L +            +
Sbjct: 577 MQEKIFEHFT-QVDYSSTRRHGGTGLGLAISRSLVRLMGGD 616


>gi|51893536|ref|YP_076227.1| two-component hybrid sensor and regulator [Symbiobacterium
           thermophilum IAM 14863]
 gi|51857225|dbj|BAD41383.1| two-component hybrid sensor and regulator [Symbiobacterium
           thermophilum IAM 14863]
          Length = 755

 Score =  366 bits (940), Expect = 8e-99,   Method: Composition-based stats.
 Identities = 95/505 (18%), Positives = 192/505 (38%), Gaps = 43/505 (8%)

Query: 331 IPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389
               V      +   NP++  +T Y   + I     +        L+     + +     
Sbjct: 16  DGIVVADKDTVILDVNPAYEAVTGYSRDELIGRKTNI----VRSGLTPPEVFRDMWTQLG 71

Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME- 448
            +            +    N            ++    +   GI  +    +  ++++  
Sbjct: 72  RQGKWVGEVIN---RHKNGNLWYSFLSITRIVDEGGSVVAYVGIARDITQRKAMEQQLRQ 128

Query: 449 -------------IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
                         +  +L ++L++  + I +++  GI +  N     + G P E I+ K
Sbjct: 129 NLAEIQSARELAQAQATRLTALLDSVGEAIIMVDTLGICVVANHQAGGMLGLPAEQIVGK 188

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI---TLGSTKEEKLLSLRIIIKKLPFSS 552
                      S+         + +    +E          +  ++              
Sbjct: 189 SVHELHALALRSLGVSAFQWQPAPNGGPPIEPETNVIETREQRPRVFHEFAAPVTDTEGH 248

Query: 553 --CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
                    DI+                 +    K++F+A VSHE+RTP+T+I G   ++
Sbjct: 249 VLGRIYVYRDIT--------------KETELDRMKTEFIATVSHELRTPMTSIKGALGLV 294

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
                G L  P   E       + + ++ ++ND+LDIS+IE+GKM +   P+S  + V  
Sbjct: 295 LGGAAGDLP-PEARELLTIARNNTDRLIRLINDILDISRIEAGKMEIRRAPLSPADVVRR 353

Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
           A+  +  +A ++ I + T     + R++AD   + Q+  N++SNAI F+P G +++I   
Sbjct: 354 AVEEMNAFARQRNITLTTDVPEGLARVMADADRLHQVLDNLISNAIKFSPQGSEVLIRAR 413

Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
            T +  V   V D G G+   +     + F ++ N+   +  GTGLGL + KA+V+ + G
Sbjct: 414 ETGDG-VRFDVIDRGPGIPADQTGLIFERFYRVDNAASRKTGGTGLGLTICKAIVEEHGG 472

Query: 791 KFYIFSTPAKGTLIEIIFPLYDTSH 815
           + ++ S   +G+      P+    H
Sbjct: 473 QIWVESALGEGSTFSFTIPVEPGGH 497



 Score = 73.1 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 47/135 (34%), Gaps = 6/135 (4%)

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
           L  +   + DGI + +++ +IL  N A   + GY  ++++ +   +     TP  +   +
Sbjct: 7   LREVYWHSLDGIVVADKDTVILDVNPAYEAVTGYSRDELIGRKTNIVRSGLTPPEVFRDM 66

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKN 569
              L    +       +   K   L    + I ++         Y     DI++ K  + 
Sbjct: 67  WTQL--GRQGKWVGEVINRHKNGNLWYSFLSITRIVDEGGSVVAYVGIARDITQRKAMEQ 124

Query: 570 KLSHAKKIAEKESSH 584
           +L       +     
Sbjct: 125 QLRQNLAEIQSAREL 139



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 41/401 (10%), Positives = 88/401 (21%), Gaps = 57/401 (14%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD---LLKRQNTWYGK 146
           D    + +++       G    ++IG +         + P     D    L RQ  W G+
Sbjct: 22  DKDTVILDVNPAYEAVTGYSRDELIGRKTN--IVRSGLTPPEVFRDMWTQLGRQGKWVGE 79

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                  G   Y    L+   I         +   GI              ++   +   
Sbjct: 80  VINRHKNGNLWYSF--LSITRIVDEGGSVVAY--VGIARDITQRKAMEQQLRQNLAEIQS 135

Query: 207 LHEIKKGHSSVEKEKYDIFSQQ---------------SPPPHLRMKNK------VSSLTE 245
             E+ +  ++      D   +                     L +  +      V  L  
Sbjct: 136 ARELAQAQATRLTALLDSVGEAIIMVDTLGICVVANHQAGGMLGLPAEQIVGKSVHELHA 195

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
                  V   +  P         PE     T         ++   + +        +  
Sbjct: 196 LALRSLGVSAFQWQPAPNGGPPIEPETNVIETREQRPRVFHEFAAPVTDTEGHVLGRIYV 255

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365
               +     D  +     TV                      L          + +  G
Sbjct: 256 YRDITKETELDRMKTEFIATVSH-------------------ELRTPMTSIKGALGLVLG 296

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE--NSLAMTFIPFEKANQ 423
            +         +   +  +    +DR     +  L   +              P +   +
Sbjct: 297 GAA---GDLPPEARELLTIARNNTDRLIRLINDILDISRIEAGKMEIRRAPLSPADVVRR 353

Query: 424 FPENMPQNGIEPED---VDTRINKRKMEIEVMQLCSILEAT 461
             E M     +       D      ++  +  +L  +L+  
Sbjct: 354 AVEEMNAFARQRNITLTTDVPEGLARVMADADRLHQVLDNL 394


>gi|94263691|ref|ZP_01287499.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93455890|gb|EAT06049.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 1211

 Score =  366 bits (939), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 122/582 (20%), Positives = 228/582 (39%), Gaps = 40/582 (6%)

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL---------- 311
           L + +    +   +  +  +    +     +++        L   N  +           
Sbjct: 86  LANPDHPFDQVVRYRHLKGHTVWVRCRGLAIRDKQGRPIRILGAHNDITEYKQQQLALEE 145

Query: 312 -SAYFDEGENLTPETVDKCPIPFFVYSHGN---LFYANPSFLLLTKYKSVDDIEIAGGLS 367
             A   + E+     V+  P+  +         + +A+ +   L  Y S + +       
Sbjct: 146 TQATLRQSEDKYRTLVENLPVLIYRSEVDAPWAMLHASQNAEQLCGYSSDEFLSGQLTWV 205

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
            ++ A  L    A     +   ++  +    R                   +  +Q    
Sbjct: 206 DVIVAEDLPLVEAAVQQAIKAREKYTVEYRIR----HQKGHVIWVSETGSAQDYDQNGHP 261

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFG 486
              +G+  +  D    ++++  +  +   + E +  GIA+ +   G  L  N AV++  G
Sbjct: 262 AYLDGVIADITDRVQAQKEISAQEAKFRGLFELSPVGIAMNDFATGEFLEFNAAVNEPAG 321

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
           Y  E+  +  +               L  +  +      EK  +   K+     + +   
Sbjct: 322 YTPEEFKQLSYFDVTPMEYMEDEKRQLESMEKIGRYGPFEKEYI--RKDGSRYPVLLNGF 379

Query: 547 KLPFSSC---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
           K             + DISE       +  A++ AE  +  KS+FLA +SHEIRTP+ AI
Sbjct: 380 KTTTPEGKAVIWSIIQDISE-------IKKAQEAAEAANRSKSEFLANMSHEIRTPMNAI 432

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           IG  ++    +  P   PR  +Y   I  S   +L ++ND+LD SKIE+GK+ +   P  
Sbjct: 433 IGLGQLALKSQ--PPPPPRLYDYLEKITGSAATLLTLINDILDFSKIEAGKLAIDQVPFD 490

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSG 722
           L E +++   L+   A EK + +  +  +  P +++ D   + Q+ +N+ SNAI FT  G
Sbjct: 491 LSEILNQLDHLMAGQAAEKGLELLFAVDSGAPRQLVGDPHRLGQVLINLTSNAIKFTQQG 550

Query: 723 GQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
            ++ IS            + + VRDTG+GM+  ++E+  +PF Q   +   +  GTGLGL
Sbjct: 551 -EVTISFEVADPTADPLILRVAVRDTGIGMSPEQIERIFQPFTQADGATTRKHGGTGLGL 609

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820
            +A  +V    G+  + STP  G+       L     PH  +
Sbjct: 610 SIAGRLVKLLGGEIRVESTPGAGSTFSFTC-LLGRHEPHKAL 650



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/386 (6%), Positives = 70/386 (18%), Gaps = 37/386 (9%)

Query: 98  ISEELPKTIGNYAFK--MIGMRLCDVSDILHIDPNNH-IGDLLKRQN-TWYGKTTLWPIE 153
           +S +  + +G        +     D+ +   +      +   L   +  +        ++
Sbjct: 44  MSPKFWQILGYDPSTKQHLSSEWQDIINQDDLKATTENLEKHLANPDHPFDQVVRYRHLK 103

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
           G    V +    L I  +       R  G  +        +   +          +  + 
Sbjct: 104 GHT--VWVRCRGLAIRDKQGRPI--RILGAHNDITEYKQQQLALEETQATLRQSEDKYRT 159

Query: 214 HSSVEKEKYDIFSQQSPPPHLRMKNKVSSL---------------TEYYAHKDDVLKTEK 258
                          +P   L        L                +    +D  L    
Sbjct: 160 LVENLPVLIYRSEVDAPWAMLHASQNAEQLCGYSSDEFLSGQLTWVDVIVAEDLPLVEAA 219

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL-----SHRNHPSLSA 313
                        +        +     +       +      YL        +      
Sbjct: 220 VQQAIKAREKYTVEYRIRHQKGHVIWVSETGSAQDYDQNGHPAYLDGVIADITDRVQAQK 279

Query: 314 YFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
                E       +  P+   +     G     N +      Y   +       LS    
Sbjct: 280 EISAQEAKFRGLFELSPVGIAMNDFATGEFLEFNAAVNEPAGYTPEE----FKQLSYFDV 335

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS-LAMTFIPFEKANQFPENMPQ 430
            P     +  + +                  I+ +     + +                 
Sbjct: 336 TPMEYMEDEKRQLESMEKIGRYGPFEKEY--IRKDGSRYPVLLNGFKTTTPEGKAVIWSI 393

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCS 456
                E    +           +  +
Sbjct: 394 IQDISEIKKAQEAAEAANRSKSEFLA 419



 Score = 42.7 bits (99), Expect = 0.27,   Method: Composition-based stats.
 Identities = 26/206 (12%), Positives = 69/206 (33%), Gaps = 11/206 (5%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMI-GM-RLCDVSDILHI-DPNNHIGDLLKRQNTWY 144
            +DA   +   S+   +  G  + + + G     DV     +      +   +K +  + 
Sbjct: 172 EVDAPWAMLHASQNAEQLCGYSSDEFLSGQLTWVDVIVAEDLPLVEAAVQQAIKAREKYT 231

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            +  +   +G  ++V    +A   Y +N   +   G  ++         +      + KF
Sbjct: 232 VEYRIRHQKGHVIWVSETGSAQ-DYDQNGHPAYLDG--VIADITDRVQAQKEISAQEAKF 288

Query: 205 SHLHEIKKGHSSVEK-EKYDIFSQQSP--PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
             L E+     ++      +     +    P      +   L+ +     + ++ EK  L
Sbjct: 289 RGLFELSPVGIAMNDFATGEFLEFNAAVNEPAGYTPEEFKQLSYFDVTPMEYMEDEKRQL 348

Query: 262 LTSE--ESSLPEQEDFHTINLNQYTK 285
            + E      P ++++   + ++Y  
Sbjct: 349 ESMEKIGRYGPFEKEYIRKDGSRYPV 374


>gi|193216009|ref|YP_001997208.1| PAS/PAC sensor hybrid histidine kinase [Chloroherpeton thalassium
            ATCC 35110]
 gi|193089486|gb|ACF14761.1| PAS/PAC sensor hybrid histidine kinase [Chloroherpeton thalassium
            ATCC 35110]
          Length = 1544

 Score =  366 bits (939), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 119/750 (15%), Positives = 253/750 (33%), Gaps = 58/750 (7%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTW-YGKT 147
             D    L E ++ L    G    +++GM    +S   H+     I +     +T    + 
Sbjct: 682  TDHEYKLIEFNDALCHIFGYTRRELLGMHFFRLSSTEHVPYLKAIFESFLSGDTEMPSEL 741

Query: 148  TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
             +   +G  + + I    L      R          +             ++ ++ +  +
Sbjct: 742  YVRRKDGQKIIIKISSGVLEREDGQRFI-----VSSIEDITDQKLSEHALEKSEENYRRI 796

Query: 208  HEIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS- 264
             E       V  E+  I            R    +           D  +  +       
Sbjct: 797  VETASEGLWVIDEEGYITFANRRMSEMLGRSVEDIIGTPLQDLIHPDEKENLQIYFYRWK 856

Query: 265  EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
                 P+   F  +N +         ++ +   +    L      +   + +E    + +
Sbjct: 857  LGIEEPQDLKFRKLNGSILWGIVNTASIFDEFGKFTGALGMLTDITERKFAEEQLKSSQQ 916

Query: 325  ----TVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
                 ++  P+    +     +   NP+   +  +K  +          +L         
Sbjct: 917  KLKHHIESTPLAAIEFDMSFKIVSWNPAAEKIFGFKKEEAFGK---HVRVLIPNTEWQAV 973

Query: 380  AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
              +   L +     +        +  + ++     +      +     +    +  +  +
Sbjct: 974  YNEWTDLLQKQSGSVH---TFANLTKSGKHIQCNWYS-TPLIDNTGNTIGIAALAEDITE 1029

Query: 440  TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
             ++ +  +      L +I E+    +  I+    I+  N+A   +FGY   +I+ + F +
Sbjct: 1030 KKLAEAALIESQKSLTAIFESIDAAVISIDYNMQIVMFNKAGETIFGYTSAEIIGQSFDI 1089

Query: 500  FLEQNTPSVMNHYLTEILSLDLRQT---LEKITLGSTKEEKLLSLRIIIKKLPFSS--CY 554
             L +++  V    + E             EK   G  K          I KL        
Sbjct: 1090 LLPEDSQHVHISEIIEFSQSSQTILKISDEKGLFGLRKHASSFPAEASISKLMVGGKPLM 1149

Query: 555  SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
             + ++DI+E K+ + ++  A+++            + ++H++   LT I+   E++K   
Sbjct: 1150 VILLNDITERKKMQEQILRAQRM-----ESIGLLASGIAHDMNNILTPIMMSMELLKE-- 1202

Query: 615  FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
               + +    E    I++S     +++  LL  ++   GK      PV+L   + E  + 
Sbjct: 1203 --IVDDEEGFERIQTINKSTRRAKNLIQQLLAFAR---GKSEQQI-PVNLRRLILELTNF 1256

Query: 675  VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH--- 731
            ++       I +  +   N+P IL D   + Q+ +N+  NA    P GGQ+ IS+     
Sbjct: 1257 MKETFPR-SIQLSVNIPKNLPFILGDPTQIHQVLMNLCVNAHDAMPDGGQLSISSEKISL 1315

Query: 732  -----------TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
                        +   + + V+DTG G+ N  L K  +PF         +G+G+GLGL +
Sbjct: 1316 SEAETKLHIDAKAGNYIKVIVKDTGTGIPNEHLHKIFEPFFTTKQ----QGKGSGLGLAM 1371

Query: 781  AKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
               +V  + G   + S   KGT  EI FPL
Sbjct: 1372 TYTIVHNHGGFITVDSEERKGTAFEIYFPL 1401



 Score =  171 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 65/518 (12%), Positives = 156/518 (30%), Gaps = 29/518 (5%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKRQNTWYGKT 147
             +A G ++ ++    +  G  A + IG     + SD+ + +    I   +     W G+ 
Sbjct: 556  TNAAGEIEYVNPCFERVTGYTAKEAIGQNPRILKSDLHNQEYYASIWSQILLGKNWTGEF 615

Query: 148  TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                  G   +    ++  PI     + + F    I        +     +  +   S +
Sbjct: 616  QNKRKNGELYWESATIS--PIKDETGKITHF--IAIKEDITHRKEAELALRESENLLSQI 671

Query: 208  HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT----EKYPLLT 263
            ++       +   +Y +        H+    +   L  ++               +    
Sbjct: 672  YKTLHTGICLTDHEYKLIEFNDALCHIFGYTRRELLGMHFFRLSSTEHVPYLKAIFESFL 731

Query: 264  SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF---EYLSHRNHPSLSAYFDEGEN 320
            S ++ +P +      +  +   K   G L+    + F         +        ++ E 
Sbjct: 732  SGDTEMPSELYVRRKDGQKIIIKISSGVLEREDGQRFIVSSIEDITDQKLSEHALEKSEE 791

Query: 321  LTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
                 V+      + +   G + +AN     +   +SV+DI        +       +  
Sbjct: 792  NYRRIVETASEGLWVIDEEGYITFANRRMSEMLG-RSVEDIIGTPLQDLIHPD----EKE 846

Query: 380  AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
             ++                +    +    + L          ++F +     G+  +  +
Sbjct: 847  NLQIYFYRWKLGIEEPQDLKF---RKLNGSILWGIVNTASIFDEFGKFTGALGMLTDITE 903

Query: 440  TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
             +  + +++    +L   +E+T       +    I+S N A  K+FG+  E+   K   V
Sbjct: 904  RKFAEEQLKSSQQKLKHHIESTPLAAIEFDMSFKIVSWNPAAEKIFGFKKEEAFGKHVRV 963

Query: 500  FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYS 555
             +       + +  T++L               TK  K +        L  ++      +
Sbjct: 964  LIPNTEWQAVYNEWTDLLQKQSGSV--HTFANLTKSGKHIQCNWYSTPLIDNTGNTIGIA 1021

Query: 556  LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
                DI+E K  +  L  ++K             A +S
Sbjct: 1022 ALAEDITEKKLAEAALIESQKSLTAIFESID--AAVIS 1057



 Score =  147 bits (372), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 62/517 (11%), Positives = 148/517 (28%), Gaps = 27/517 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI---DPNNHIGDLLKRQNT 142
            +     G L  I+  L K IG  + K     + +     +         +   LK  + 
Sbjct: 298 IFQSSFEGKLIHINPALAKMIGYDSVKEAMDHVTNFGAQFYDKLETRKKIVAITLKSDDF 357

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
            +        E    Y    L    +           G  ++  N          ++   
Sbjct: 358 QFFDLVFRKKENEKRYG--KLFIRAVRDDKGRPKYIEG--LIEDNTDRRIAEEELEKTIN 413

Query: 203 KFSHLHEIKKG------HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK----DD 252
           +F  L +   G      H+   K ++   S  S   +     ++ +  +++       D 
Sbjct: 414 QFQRLADNVPGMIYQYLHTVDGKSEFTYISPHSKDIYELESYEIIADMDHFFQLHHPHDF 473

Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
            L  +   +          +    T +       Q     +  S     +       +  
Sbjct: 474 HLICDIAKVSDPNSKPWNWEGRIITPSGKTKWI-QGRAHPEILSNGDILWDGLVTDITER 532

Query: 313 AYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
             ++E        V++      + +  G + Y NP F  +T Y + + I         + 
Sbjct: 533 KAYEEKIKQLSTAVEQSANAIMITNAAGEIEYVNPCFERVTGYTAKEAIGQNP----RIL 588

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
              L +      +                   + N E     +       ++  +     
Sbjct: 589 KSDLHNQEYYASIWSQILLGKNWTGE--FQNKRKNGE-LYWESATISPIKDETGKITHFI 645

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
            I+ +    +  +  +      L  I +    GI + + E  ++  N A+  +FGY   +
Sbjct: 646 AIKEDITHRKEAELALRESENLLSQIYKTLHTGICLTDHEYKLIEFNDALCHIFGYTRRE 705

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
           +L   F           +       LS D     E        ++ ++ +   + +    
Sbjct: 706 LLGMHFFRLSSTEHVPYLKAIFESFLSGDTEMPSELYVRRKDGQKIIIKISSGVLEREDG 765

Query: 552 SCYSL-TMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
             + + ++ DI++ K  ++ L  +++   +     S+
Sbjct: 766 QRFIVSSIEDITDQKLSEHALEKSEENYRRIVETASE 802



 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 68/571 (11%), Positives = 159/571 (27%), Gaps = 43/571 (7%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNTWYGKT 147
           D  G + +I+      IG     + G     +    H          +L K   T    +
Sbjct: 175 DLDGNIIQINPFAESLIGYPLENIKGQNWFKLFVPEHDRAEGKNIFHELTKENKTQSHIS 234

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
           T+    G+     I+     +     +  G  G GI              K  +++F   
Sbjct: 235 TVISANGSQYA--IEWYCKTLTDTRGKIIGVLGIGI--DISERLQAEFALKASEERFRGF 290

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH------KDDVLKTEKYPL 261
            E           +  +         +   + V    ++  +           + +   +
Sbjct: 291 FENSPIGIFQSSFEGKLIHINPALAKMIGYDSVKEAMDHVTNFGAQFYDKLETRKKIVAI 350

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH----RNHPSLSAYFDE 317
               +        F      +   K +   ++++               +        ++
Sbjct: 351 TLKSDDFQFFDLVFRKKENEKRYGKLFIRAVRDDKGRPKYIEGLIEDNTDRRIAEEELEK 410

Query: 318 GENLTPETVDKCPIPFF-----VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
             N      D  P   +     V       Y +P    + + +S + I     +      
Sbjct: 411 TINQFQRLADNVPGMIYQYLHTVDGKSEFTYISPHSKDIYELESYEIIA---DMDHFFQL 467

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
               D + I  +    SD      +     I  + +    +      +     + +  +G
Sbjct: 468 HHPHDFHLICDIAKV-SDPNSKPWNWEGRIITPSGKTK-WIQGRAHPEILSNGD-ILWDG 524

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
           +  +  + +  + K++    QL + +E +++ I I N  G I   N    ++ GY  ++ 
Sbjct: 525 LVTDITERKAYEEKIK----QLSTAVEQSANAIMITNAAGEIEYVNPCFERVTGYTAKEA 580

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
           + +   +             +   + L    T         K  +L      I  +   +
Sbjct: 581 IGQNPRILKSDLHNQEYYASIWSQILLGKNWTG--EFQNKRKNGELYWESATISPIKDET 638

Query: 553 C----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH-----EIRTPLTAI 603
                +     DI+  K+ +  L  ++ +  +        +    H     E    L  I
Sbjct: 639 GKITHFIAIKEDITHRKEAELALRESENLLSQIYKTLHTGICLTDHEYKLIEFNDALCHI 698

Query: 604 IGFSEV-IKNQRFGPLGNPRYIEYANYIDRS 633
            G++   +    F  L +  ++ Y   I  S
Sbjct: 699 FGYTRRELLGMHFFRLSSTEHVPYLKAIFES 729



 Score =  138 bits (348), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 67/541 (12%), Positives = 144/541 (26%), Gaps = 69/541 (12%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGM--RLCDVSDILHIDPNNHIGDLLK-RQNTWYG 145
           +D       IS          ++++I        +           I  +       W  
Sbjct: 433 VDGKSEFTYISPHSKDIYELESYEIIADMDHFFQLHHPHDFHLICDIAKVSDPNSKPWNW 492

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +  +    G      I   A P    N +       G+V             K+L    S
Sbjct: 493 EGRIITPSGKTK--WIQGRAHPEILSNGDIL---WDGLVTDITERKAYEEKIKQL----S 543

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
              E       +     +I         +      +           D   +     + +
Sbjct: 544 TAVEQSANAIMITNAAGEIEYVNPCFERVTGYTAKEAIGQNPRILKSDLHNQEYYASIWS 603

Query: 264 SEESSLPEQEDFH--TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS----LSAYFDE 317
                     +F     N   Y +      +++ + +   +++ +   +          E
Sbjct: 604 QILLGKNWTGEFQNKRKNGELYWESATISPIKDETGKITHFIAIKEDITHRKEAELALRE 663

Query: 318 GENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDI----------EIAGGL 366
            ENL  +          +  H   L   N +   +  Y   + +          E    L
Sbjct: 664 SENLLSQIYKTLHTGICLTDHEYKLIEFNDALCHIFGYTRRELLGMHFFRLSSTEHVPYL 723

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
             + ++    D      + + R D   I        ++        ++            
Sbjct: 724 KAIFESFLSGDTEMPSELYVRRKDGQKIIIKISSGVLEREDGQRFIVSS----------- 772

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
                    +  D ++++  +E        I+E  S+G+ +I+ EG I   NR +S++ G
Sbjct: 773 -------IEDITDQKLSEHALEKSEENYRRIVETASEGLWVIDEEGYITFANRRMSEMLG 825

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
             VEDI+  P    +  +    +  Y              +          +L   +   
Sbjct: 826 RSVEDIIGTPLQDLIHPDEKENLQIYFYRWKLGIEEP---QDLKFRKLNGSILWGIVNTA 882

Query: 547 KLPFS----SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
            +       +     + DI+E K  + +L  +++  +                  TPL A
Sbjct: 883 SIFDEFGKFTGALGMLTDITERKFAEEQLKSSQQKLKHHIES-------------TPLAA 929

Query: 603 I 603
           I
Sbjct: 930 I 930



 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 37/274 (13%), Positives = 83/274 (30%), Gaps = 35/274 (12%)

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
            L+      ++     V        V    G++ YANP+   L        + +  G   
Sbjct: 42  RLNEELVLAKSRFESIVKNSADGILVLDDKGHIVYANPATHALFGVAPQSLLGLDFGYPA 101

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
           +              + L R          R+   +W   ++  ++              
Sbjct: 102 V--------CGETTELDLPRHHGQPTVVEMRVADTEWEGRHASILSLH------------ 141

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
                  +  + +  +  ++ E     S++      IA+ + +G I+  N     L GYP
Sbjct: 142 -------DVTERKKVEDALQKERDFAESLVATAHAIIAVFDLDGNIIQINPFAESLIGYP 194

Query: 489 VEDILRKPFTVFLEQN-TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
           +E+I  + +          +   +   E+   +  Q+     +  +      ++    K 
Sbjct: 195 LENIKGQNWFKLFVPEHDRAEGKNIFHELTKENKTQSHISTVI--SANGSQYAIEWYCKT 252

Query: 548 LPFSS----CYSLTMHDISEWKQEKNKLSHAKKI 577
           L  +            DISE  Q +  L  +++ 
Sbjct: 253 LTDTRGKIIGVLGIGIDISERLQAEFALKASEER 286



 Score =  104 bits (260), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 59/525 (11%), Positives = 135/525 (25%), Gaps = 47/525 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D  G++   +       G     ++G    D            +            +  
Sbjct: 68  LDDKGHIVYANPATHALFGVAPQSLLG---LDFGYPAVCGETTELDLPRHHGQPTVVEMR 124

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           +   E    +     + L ++              V   +   D     +   +      
Sbjct: 125 VADTEWEGRH----ASILSLHD-------------VTERKKVEDALQKERDFAESLVATA 167

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS--SLTEYYAHKDDVLKTEKYPLLTSEE 266
                   ++     I           ++N         +    D       +  LT E 
Sbjct: 168 HAIIAVFDLDGNIIQINPFAESLIGYPLENIKGQNWFKLFVPEHDRAEGKNIFHELTKEN 227

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD----EGENLT 322
            +        + N +QY  + Y  TL +   +    L      S     +      E   
Sbjct: 228 KTQSHISTVISANGSQYAIEWYCKTLTDTRGKIIGVLGIGIDISERLQAEFALKASEERF 287

Query: 323 PETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSV-DDIEIAGGLSTLLDAPKLSDNNA 380
               +  PI  F  S  G L + NP+   +  Y SV + ++              +    
Sbjct: 288 RGFFENSPIGIFQSSFEGKLIHINPALAKMIGYDSVKEAMDHVTNFGAQFYDKLETRKKI 347

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
           +  + L   D        R    +                 +         G+  ++ D 
Sbjct: 348 V-AITLKSDDFQFFDLVFRKKENEKRYGKLFI-----RAVRDDKGRPKYIEGLIEDNTDR 401

Query: 441 RINKRKMEIEVMQLCSILEATSDGIA----IINREGIILSTNRAVSKLFGYPVEDIL--R 494
           RI + ++E  + Q   + +     I      ++ +      +     ++     +I+   
Sbjct: 402 RIAEEELEKTINQFQRLADNVPGMIYQYLHTVDGKSEFTYISPHSKDIYELESYEIIADM 461

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC- 553
             F      +   ++       +S    +         T   K   ++        S+  
Sbjct: 462 DHFFQLHHPHDFHLICDIAK--VSDPNSKPWNWEGRIITPSGKTKWIQGRAHPEILSNGD 519

Query: 554 --YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
             +   + DI+E K  + K+       E+ ++     +   + EI
Sbjct: 520 ILWDGLVTDITERKAYEEKIKQLSTAVEQSANAI--MITNAAGEI 562



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 49/401 (12%), Positives = 109/401 (27%), Gaps = 27/401 (6%)

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL--RMKNKVSSLT 244
            R  N           +F  + +       V  +K  I         L       +  L 
Sbjct: 37  RREINRLNEELVLAKSRFESIVKNSADGILVLDDKGHIVYANPATHALFGVAPQSLLGLD 96

Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
             Y      +  E   L        P   +    +     +     +L +          
Sbjct: 97  FGYP----AVCGETTELDLPRHHGQPTVVEMRVADTEWEGRHASILSLHD---------- 142

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIA 363
                 +     +  +     V        V+   GN+   NP    L  Y  +++I+  
Sbjct: 143 VTERKKVEDALQKERDFAESLVATAHAIIAVFDLDGNIIQINPFAESLIGY-PLENIKGQ 201

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
                L                L + ++T     + + T+     +  A+ +      + 
Sbjct: 202 NWF-KLFVPEHDRAEGKNIFHELTKENKTQ----SHISTVISANGSQYAIEWYCKTLTDT 256

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
             + +   GI  +  +    +  ++    +     E +  GI   + EG ++  N A++K
Sbjct: 257 RGKIIGVLGIGIDISERLQAEFALKASEERFRGFFENSPIGIFQSSFEGKLIHINPALAK 316

Query: 484 LFGYPVEDILRKPFTVFLE--QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
           + GY          T F     +        +   L  D  Q  + +      E++   L
Sbjct: 317 MIGYDSVKEAMDHVTNFGAQFYDKLETRKKIVAITLKSDDFQFFDLVFRKKENEKRYGKL 376

Query: 542 RIIIKKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEK 580
            I   +            + D ++ +  + +L       ++
Sbjct: 377 FIRAVRDDKGRPKYIEGLIEDNTDRRIAEEELEKTINQFQR 417



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 49/430 (11%), Positives = 122/430 (28%), Gaps = 43/430 (10%)

Query: 86   TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
             W ID  GY+   +  + + +G     +IG  L D+      +         K       
Sbjct: 804  LWVIDEEGYITFANRRMSEMLGRSVEDIIGTPLQDLIHPDEKENLQIYFYRWKLGIEEPQ 863

Query: 146  KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
                  + G+ L+  ++ A+  I+    +F+G  G  ++             K   +K  
Sbjct: 864  DLKFRKLNGSILWGIVNTAS--IFDEFGKFTGALG--MLTDITERKFAEEQLKSSQQKLK 919

Query: 206  HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY--PLLT 263
            H  E     +      + I S       +    K  +  ++        + +        
Sbjct: 920  HHIESTPLAAIEFDMSFKIVSWNPAAEKIFGFKKEEAFGKHVRVLIPNTEWQAVYNEWTD 979

Query: 264  SEESSLPEQEDFHTI--NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS----LSAYFDE 317
              +        F  +  +        Y   L +N+  +    +     +      A   E
Sbjct: 980  LLQKQSGSVHTFANLTKSGKHIQCNWYSTPLIDNTGNTIGIAALAEDITEKKLAEAALIE 1039

Query: 318  GENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
             +       +        +  +  +   N +   +  Y S + I  +  +   L      
Sbjct: 1040 SQKSLTAIFESIDAAVISIDYNMQIVMFNKAGETIFGYTSAEIIGQSFDI---LLPEDSQ 1096

Query: 377  DNNAIKPVMLYRSDRTCIAA--SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
              +  + +   +S +T +       L  ++ +  +  A   I        P       + 
Sbjct: 1097 HVHISEIIEFSQSSQTILKISDEKGLFGLRKHASSFPAEASISKLMVGGKP---LMVILL 1153

Query: 435  PEDVDTRINKRKMEIEVMQLCSI----------LEATSDGI---------AIINREG--I 473
             +  + +  + ++ +   ++ SI          +      I          + + EG   
Sbjct: 1154 NDITERKKMQEQI-LRAQRMESIGLLASGIAHDMNNILTPIMMSMELLKEIVDDEEGFER 1212

Query: 474  ILSTNRAVSK 483
            I + N++  +
Sbjct: 1213 IQTINKSTRR 1222


>gi|229019810|ref|ZP_04176612.1| hypothetical protein bcere0030_43100 [Bacillus cereus AH1273]
 gi|229026036|ref|ZP_04182419.1| hypothetical protein bcere0029_43210 [Bacillus cereus AH1272]
 gi|228735252|gb|EEL85864.1| hypothetical protein bcere0029_43210 [Bacillus cereus AH1272]
 gi|228741481|gb|EEL91679.1| hypothetical protein bcere0030_43100 [Bacillus cereus AH1273]
          Length = 545

 Score =  366 bits (939), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 92/388 (23%), Positives = 180/388 (46%), Gaps = 26/388 (6%)

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           +           +   + +  +E E    +L +++E    G+ +I+  G I   NR+  +
Sbjct: 174 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 233

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542
            F    E+ L + +           +   + EI   +++   + +  LG  ++   +   
Sbjct: 234 TFHVTDEEYLDRLYYESFHHT---EIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 290

Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
            II          L  HDI+E K+ +                + DFLA VSHE++TP+T+
Sbjct: 291 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 336

Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           I GFSE + +   G + N ++ E + + I +    +  ++ DLLD+SKIE     L+   
Sbjct: 337 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFRLNMGT 393

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           V +   + +   ++   A EK I ++ +    +  ++ D   +KQI +N+++NAI +TP+
Sbjct: 394 VDMKGILEDIHMVLDNKAGEKEISLQVNGLKRV-SVIGDPSRLKQIFINLINNAIVYTPA 452

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           GG + +           ++V DTG+G++  E+ +  + F ++  ++     GTGLGL + 
Sbjct: 453 GGVVSVEL-LEDKYNAYIKVSDTGIGISKEEIPRIFERFYRVDKARSRNTGGTGLGLSIV 511

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           K +V+A+ G   + S   +GT   ++ P
Sbjct: 512 KHLVEAHQGTITVDSEVGEGTTFTVVLP 539


>gi|254442407|ref|ZP_05055883.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
 gi|198256715|gb|EDY81023.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
          Length = 724

 Score =  366 bits (939), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 111/509 (21%), Positives = 202/509 (39%), Gaps = 25/509 (4%)

Query: 314 YFDEGENLTPETVDKCPIPFFVYSHG------NLFYANPSFLLLTKYKSVDDIEIAGGLS 367
             D G+       +      ++          N+ YAN  F  +   +SVDD++  G + 
Sbjct: 78  AEDLGQRQYRLIAEATGDAVWMAEVDPATLDRNIVYANSGFEEIWG-RSVDDLKSQGCVY 136

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
                 +  +          + +            +         +        ++  + 
Sbjct: 137 NRWIHKEDYNWVGDALTGFLKGE----HGCDIEFRVMRPDGAVRWVWTRADRFLDESGQI 192

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
               G   +    + ++   E       S+ + +SD I I+  +G     N A  +L G 
Sbjct: 193 KFVVGFSRDITQLKSSRLAQEESERYYRSLFDNSSDAIRIVAMDGSTTDVNPAFERLIGR 252

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLT-EILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
             E +L              +    +  +I+        EK     T E   + + +   
Sbjct: 253 KREAVLSLGCEDLTPPEWLPMEREIIEKQIMVRGYSDVYEKEYY--TGEGGRVQVAMRSS 310

Query: 547 KLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
            +  ++           DISE K    +L  AK  AE  +S K  FLA VSHE+RTPL  
Sbjct: 311 LIRSANGEPTAICGIARDISEQKSRHEELMKAKLAAESANSAKDRFLAMVSHELRTPLNP 370

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           I+G++E++       + +P    +   I  S   +  +V+D+LD S IESG++++  E  
Sbjct: 371 IVGYAEILA----AKIEDPMAQRFLKIIKESAKGMASLVSDILDYSMIESGRIDIEVETF 426

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
            + + +S     ++  A E+   I+       P + AD R + Q+  N+++NA  FT +G
Sbjct: 427 RMSDLLSLVSRQIESVALERGNKIQVDLDGGDPWVEADKRKLSQVVSNLVANACKFTQNG 486

Query: 723 GQIIISTTHTSNEE---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
             +I S+   +++E   V + V DTG+G+   ELE   +PF Q+ +  +    G GLGL 
Sbjct: 487 KILISSSASQTSKEAYSVRIEVSDTGIGIPESELETIFEPFEQLGSVHKAETRGVGLGLA 546

Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           + + +V A  G   + S    GT+  +  
Sbjct: 547 ICRQLVGALGGTISVSSQLGSGTIFTVDL 575



 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/249 (10%), Positives = 66/249 (26%), Gaps = 16/249 (6%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151
            G   +++    + IG     ++ +   D++    +     I   +++Q    G + ++ 
Sbjct: 236 DGSTTDVNPAFERLIGRKREAVLSLGCEDLTPPEWLPMEREI---IEKQIMVRGYSDVYE 292

Query: 152 IE---GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVD--------NDPRALGKRL 200
            E   G    V + + +  I S N E +     GI                   A     
Sbjct: 293 KEYYTGEGGRVQVAMRSSLIRSANGEPTAI--CGIARDISEQKSRHEELMKAKLAAESAN 350

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
             K   L  +     +            +      M  +   + +  A     L ++   
Sbjct: 351 SAKDRFLAMVSHELRTPLNPIVGYAEILAAKIEDPMAQRFLKIIKESAKGMASLVSDILD 410

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
               E   +  + +   ++       +   ++        +       P + A   +   
Sbjct: 411 YSMIESGRIDIEVETFRMSDLLSLVSRQIESVALERGNKIQVDLDGGDPWVEADKRKLSQ 470

Query: 321 LTPETVDKC 329
           +    V   
Sbjct: 471 VVSNLVANA 479


>gi|229093684|ref|ZP_04224783.1| hypothetical protein bcere0021_44080 [Bacillus cereus Rock3-42]
 gi|228689569|gb|EEL43377.1| hypothetical protein bcere0021_44080 [Bacillus cereus Rock3-42]
          Length = 571

 Score =  366 bits (939), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 92/388 (23%), Positives = 179/388 (46%), Gaps = 26/388 (6%)

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           +           +   + +  +E E    +L +++E    G+ +I+  G I   NR+  +
Sbjct: 200 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 259

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542
            F    E+ L + +           +   + EI   +++   + +  LG  ++   +   
Sbjct: 260 TFHVTDEEYLDRLYYESFHHT---EIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 316

Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
            II          L  HDI+E K+ +                + DFLA VSHE++TP+T+
Sbjct: 317 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 362

Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           I GFSE + +   G + N ++ E + + I +    +  ++ DLLD+SKIE     L    
Sbjct: 363 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLSMGT 419

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           V +   + +   ++   A EK I ++ +    +  ++ D   ++QI +N+++NAI +TP+
Sbjct: 420 VDMKGLLEDIHMVLDNKAGEKEISLQVNTLKRV-SVIGDPSRLQQIFINLMNNAIVYTPA 478

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           GG + +           ++V DTG+G++  E+ +  + F ++  ++     GTGLGL + 
Sbjct: 479 GGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIV 537

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           K +V+A+ G   + S   KGT   ++ P
Sbjct: 538 KHLVEAHHGTITVDSEVGKGTTFTVVLP 565


>gi|251797083|ref|YP_003011814.1| PAS/PAC sensor hybrid histidine kinase [Paenibacillus sp. JDR-2]
 gi|247544709|gb|ACT01728.1| PAS/PAC sensor hybrid histidine kinase [Paenibacillus sp. JDR-2]
          Length = 642

 Score =  366 bits (939), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 107/526 (20%), Positives = 221/526 (42%), Gaps = 41/526 (7%)

Query: 318 GENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
            +N+     +  PI   + S        NP+   +  +K  + +        +  + + +
Sbjct: 8   QQNMFAHVFNYAPIGIALISLDRRWIDVNPAACQILGHKRSE-LMTLDPAELIFSSRREN 66

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
            +   K ++    +      +     +  +         I   +     +         +
Sbjct: 67  LSRKFKQLL----EGKIPTLNLEKRYLLKDGAIVWVSLHISLVRDGSDGQPWYYIAQIVD 122

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
              T+++++K++  V +  S+ +   D I   + +G I+  N    KL G  V +++   
Sbjct: 123 ITATKMSEQKLQESVERYTSLKKYNHDTIISFDLQGKIIGGNVMAEKLTGRLVSELIGTS 182

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---C 553
               + ++  + +          ++  ++  +      +   + + + I  +  ++    
Sbjct: 183 IASVIGEDKLARILADNEPY--TEIESSINDVLHV---DGSYVEVLVTIAPIIVNNRSIG 237

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
           + L + DI+E K+   +    K+ A + +  KS+F+A +SHEIRTP+  +IG ++++ + 
Sbjct: 238 FYLLIKDITEQKKLLIE----KETAVRTNEVKSEFMAMMSHEIRTPMNGVIGMTDLLLDT 293

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
                 +    EY   I +SG  +L I+ND+LD SK+ESG   L  EP +L+ A++E   
Sbjct: 294 PL----DEEQKEYVTIIRKSGETLLGIINDILDFSKVESGNAELTEEPFNLNTAIAETFD 349

Query: 674 LVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTH 731
            +   A EK +  +   +  IP+ I+ D   ++QI LN++ NAI FTP G   + I    
Sbjct: 350 TLMPKAMEKNLEFKVCISPGIPQNIIGDSLKIRQIMLNLIGNAIKFTPRGSIGVSIDKAE 409

Query: 732 TSNEEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
                V     V+DTG+G+   ++    +PF Q  +    +  GTGLGL + + +V    
Sbjct: 410 AEGANVRLHFAVKDTGIGVPEDKVPYLFEPFYQADHFMVRQEGGTGLGLAITRKLVQLMD 469

Query: 790 GKFYIFSTPAKGTLIEI----------IFPLYDT-----SHPHDCI 820
           G+ Y    P  GT+               P++++       P + +
Sbjct: 470 GQIYCEPNPGGGTIFRFHILIQAELLTSIPVHESITEKAPQPEEEL 515



 Score = 43.5 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 16/193 (8%), Positives = 54/193 (27%), Gaps = 9/193 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQN-TWYGK 146
           I       +++    + +G+   +++ +   ++      +  +     LL+ +  T   +
Sbjct: 26  ISLDRRWIDVNPAACQILGHKRSELMTLDPAELIFSSRRENLSRKFKQLLEGKIPTLNLE 85

Query: 147 TTLWPIEGTNLYVPIDLAALPIYS-RNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
                 +G    V + L    +    + +   +     +             +   ++++
Sbjct: 86  KRYLLKDG--AIVWVSLHISLVRDGSDGQPWYY--IAQIVDITATKMSEQKLQESVERYT 141

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHL--RMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
            L +           +  I         L  R+ +++   +      +D L         
Sbjct: 142 SLKKYNHDTIISFDLQGKIIGGNVMAEKLTGRLVSELIGTSIASVIGEDKLARILADNEP 201

Query: 264 SEESSLPEQEDFH 276
             E      +  H
Sbjct: 202 YTEIESSINDVLH 214


>gi|301064957|ref|ZP_07205311.1| PAS domain S-box protein [delta proteobacterium NaphS2]
 gi|300440940|gb|EFK05351.1| PAS domain S-box protein [delta proteobacterium NaphS2]
          Length = 914

 Score =  366 bits (939), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 103/505 (20%), Positives = 187/505 (37%), Gaps = 22/505 (4%)

Query: 320 NLTPETVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
           +   +  +  P    + +   +  Y NP F  L  Y   D              P   + 
Sbjct: 5   DRFEQLTECSPFGISISNEDLVNEYVNPKFTELFGYTLDDIPTKGIWFEKAYPDPAYREM 64

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF--EKANQFPENMPQNGIEPE 436
                               R   ++    +   + F P    +  Q      +      
Sbjct: 65  VIQMWRADTERTIKTGTMDPRTFKVRCKDGSDKMIRFRPVDLGEGKQLLTYENRTDEIAA 124

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
           +   + ++     E  +L S++    +G+   + +  ++  N           EDIL K 
Sbjct: 125 ETALKASEEAARHEAAKLSSMISGMEEGVVFADSDNRVVEVNGYFCDFMQKTREDILGKK 184

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556
              F  +     +  ++ E       +T+ K       E  +L ++  I +        L
Sbjct: 185 LEDFHSKEISDKIVGHIGEFRKNPHSKTVVKQRSIGDAE-TILRVQ-PIYRENHYDGVLL 242

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            + +++E  +        ++ AE  S  K  FLA +SHEIRTP+ A+IG +E++      
Sbjct: 243 NVINVTELVKA-------RREAEAASMAKGQFLANMSHEIRTPMNAVIGMTELLLGTDLD 295

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
                   EY   +  + N +L ++ND+LD SKIESGK+        L   +     ++ 
Sbjct: 296 T----EQQEYVEIVKSAANGLLTLINDILDFSKIESGKLEFEKIAFDLRYVIEGVGEMMA 351

Query: 677 LYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH--TS 733
             A  K++        +   R+L D   ++Q+ +N+  NA+ FT  G  + I        
Sbjct: 352 PNAQTKQLEFTCFVDPDCEVRLLGDPERLRQVLVNLTGNAVKFTEKG-NVDIHAAMIGEE 410

Query: 734 NEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
           +  V++R  + DTG+G+     E     F Q+  S   + EGTGLGL ++K +V    G+
Sbjct: 411 DGMVLIRFAISDTGMGIPKDRQEAVFNSFTQVDGSSTRQFEGTGLGLSISKRLVALMGGR 470

Query: 792 FYIFSTPAKGTLIEIIFPLYDTSHP 816
             + S    G+      P      P
Sbjct: 471 MGLDSEVGVGSTFWFTLPFAKQDQP 495



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 55/148 (37%), Gaps = 8/148 (5%)

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
             +   + E +  GI+I N + +    N   ++LFGY ++DI  K               
Sbjct: 4   KDRFEQLTECSPFGISISNEDLVNEYVNPKFTELFGYTLDDIPTKGIWFEKAYPD-PAYR 62

Query: 511 HYLTEILSLDLRQTLE------KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564
             + ++   D  +T++      +      K+     +R     L       LT  + ++ 
Sbjct: 63  EMVIQMWRADTERTIKTGTMDPRTFKVRCKDGSDKMIRFRPVDL-GEGKQLLTYENRTDE 121

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARV 592
              +  L  +++ A  E++  S  ++ +
Sbjct: 122 IAAETALKASEEAARHEAAKLSSMISGM 149


>gi|42783765|ref|NP_981012.1| sensory box histidine kinase PhoR [Bacillus cereus ATCC 10987]
 gi|42739695|gb|AAS43620.1| sensory box histidine kinase PhoR [Bacillus cereus ATCC 10987]
          Length = 587

 Score =  366 bits (939), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 91/388 (23%), Positives = 179/388 (46%), Gaps = 26/388 (6%)

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           +           +   + +  +E E    +L +++E    G+ +I+  G I   NR+  +
Sbjct: 216 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 275

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542
            F    E+ L + +           +   + EI   +++   + +  LG  ++   +   
Sbjct: 276 TFHVTDEEYLDRLYYESFHH---PEIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 332

Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
            II          L  HDI+E K+ +                + DFLA VSHE++TP+T+
Sbjct: 333 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 378

Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           I GFSE + +   G + N ++ E + + I +    +  ++ DLLD+SKIE     L    
Sbjct: 379 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLSMGT 435

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           V +   + +   ++   A EK I ++ +    +  ++ D   ++QI +N+++NAI +TP+
Sbjct: 436 VDMKGLLEDIHMVLDNKAGEKEISLQVTTLKRV-SVIGDPSRLQQIFINLMNNAIVYTPA 494

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           GG + +           ++V DTG+G++  E+ +  + F ++  ++     GTGLGL + 
Sbjct: 495 GGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIV 553

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           K +V+A+ G   + S   +GT   ++ P
Sbjct: 554 KHLVEAHHGTITVDSEVGEGTTFTVVLP 581


>gi|219847925|ref|YP_002462358.1| PAS/PAC sensor hybrid histidine kinase [Chloroflexus aggregans DSM
           9485]
 gi|219542184|gb|ACL23922.1| PAS/PAC sensor hybrid histidine kinase [Chloroflexus aggregans DSM
           9485]
          Length = 747

 Score =  366 bits (939), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 110/510 (21%), Positives = 208/510 (40%), Gaps = 28/510 (5%)

Query: 315 FDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
             +            P    +     G     N SF  ++ Y + + +    G   L   
Sbjct: 11  QRDALQQLEHVFGAQPDAVLLSRLTDGVFVKVNRSFTTISGYSAEEVL----GKDGLTLN 66

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
              S  +      L R D             + N E    +           P       
Sbjct: 67  IWRSPEDRRHWAELMRRDG--YCVGLEFQFRRRNGELRTCLLSSQTVMIRGVP---HAIS 121

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVED 491
           I  +  + +  + +++    +   I E  +D I + +         + ++ KL GY   +
Sbjct: 122 IIHDITERKQIEAELQRSEARYRLIAENATDVIWLFDPVRMRFTFFSPSIHKLIGYSAAE 181

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSL-----DLRQTLEKITLGSTKEEKLLSLRIIIK 546
                F  FL   +   ++  L  +L+                    ++  ++   II  
Sbjct: 182 AQEMSFADFLTVESAQHVHSALQYMLNHWEGDLTTAPPWVAEIDLIHRDGHVVQAEIITS 241

Query: 547 KLPFSSCYSLTM---HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
            +       + +    DI+  KQ +  L  A++ AE  +  KS FLA VSHE+RTPL A+
Sbjct: 242 FVRDEEQRLIVLGVARDITARKQAEVALRIARQQAEAANRAKSAFLANVSHELRTPLHAV 301

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +GF++++ N        P   EY   I+RSG  +L ++N++LD++KIE+G+   +  P++
Sbjct: 302 LGFAQLLANDNN---LTPTQQEYLAIINRSGEHLLRLINEVLDLAKIEAGRYTYNAAPLN 358

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSG 722
           + + + +   L +  A  K++ +  + A N+P  I++D   ++QI +N+LSNAI FT  G
Sbjct: 359 VRQLIEDVQLLFRNRAEAKQLHLNVTCAGNVPTLIISDEAKLRQILINLLSNAIKFTDVG 418

Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE-GTGLGLPLA 781
             + +       + ++  V DTG+G+   + +K  +PF Q   + +     G GLGL ++
Sbjct: 419 S-VHLHV-IREEQRLLFTVEDTGIGIPPLDQQKLFRPFFQGQQTGEYNSSVGVGLGLSIS 476

Query: 782 KAMVDANMGKFYIFST-PAKGTLIEIIFPL 810
             +     G   ++S     G+   ++ PL
Sbjct: 477 YELARLIGGDLSVYSEGRGCGSRFTLVIPL 506



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/312 (9%), Positives = 81/312 (25%), Gaps = 24/312 (7%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151
            G   +++       G  A +++G     ++     +   H  +L++R     G    + 
Sbjct: 36  DGVFVKVNRSFTTISGYSAEEVLGKDGLTLNIWRSPEDRRHWAELMRRDGYCVGLEFQFR 95

Query: 152 IEGTNLYV------PIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
                L         + +  +P               I+H         A  +R + ++ 
Sbjct: 96  RRNGELRTCLLSSQTVMIRGVPH-----------AISIIHDITERKQIEAELQRSEARYR 144

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
            + E       +       F+  SP  H  +    +   E        +++ ++     +
Sbjct: 145 LIAENATDVIWLFDPVRMRFTFFSPSIHKLIGYSAAEAQEMSFADFLTVESAQHVHSALQ 204

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
                 + D  T         +     ++      E ++             G       
Sbjct: 205 YMLNHWEGDLTTAP---PWVAEIDLIHRDGHVVQAEIITSFVRDEEQRLIVLGVARDITA 261

Query: 326 VDKCPIPFFVYSHGNLFYANP---SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
             +  +   +        AN    +FL    ++    +    G + LL           +
Sbjct: 262 RKQAEVALRIARQ-QAEAANRAKSAFLANVSHELRTPLHAVLGFAQLLANDNNLTPTQQE 320

Query: 383 PVMLYRSDRTCI 394
            + +       +
Sbjct: 321 YLAIINRSGEHL 332


>gi|117926806|ref|YP_867423.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117610562|gb|ABK46017.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1271

 Score =  366 bits (939), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 137/752 (18%), Positives = 266/752 (35%), Gaps = 46/752 (6%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            +DA G L   +  L K  G       G  + D       +      + +  +     + +
Sbjct: 403  LDADGCLVRWNSNLAKMTGLDEQSFAGRSILDFVAPTSRNAFIEAMEKVLTEG-LATQES 461

Query: 149  LWPIEGTNLYVPIDLAALPIYSRNREFSG---FRGFGIVHVNRVDNDPRALGKRLDKKFS 205
                 G    +P       I     E  G     G G+          R   +       
Sbjct: 462  YLQTMGRQQ-IPFAFQINRI-----EIEGKLYLSGMGV--DISEQLSMRHALQESQDILD 513

Query: 206  HLHEIKKGHSSVEKEKYDIFSQQS-------PPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
             + ++ +    V K         +         P  R  +  + L     H    L    
Sbjct: 514  QVQKVAQLGGIVWKPASGFMQWSAQVYPMLGLQPGQRSLSLRTLLHGLSRHARKGLLQRL 573

Query: 259  YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA----Y 314
              L  +    +  +      +  +          Q++ +E  + L      +        
Sbjct: 574  GELRDTRHHVIERELHLLGFDGIKRYLHLRGQHRQSHDQEHPQILITLQDLTPHKIIQHQ 633

Query: 315  FDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
                       ++  PIP F          AN +F  L   + ++ +       T     
Sbjct: 634  LQHQLTFQQTLLNTIPIPVFYKDRQLRYQIANEAFSKLLN-QPLETLIGRTVYET----- 687

Query: 374  KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
               +   I  +  +              TIQ   +N   + F       +  ++    G 
Sbjct: 688  SPLEMAKIYDIADHNLLDHPDRVQQYQATIQPQSDNPHHVVFYKAVVPGEQGQHAGIVGA 747

Query: 434  EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDI 492
              +  +    ++ +E    +  ++L +    + + N    ++L TN A    FG    + 
Sbjct: 748  ILDVTEQTRAQKALEESNRRFETVLGSLESYLFVTNIESNMVLFTNHAARLRFG----ET 803

Query: 493  LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
            + +P                  +  +                  +  ++RI +       
Sbjct: 804  VGQPCWKTFHLGCKEGGCQSCIQGGASIPHHGHHWEYHNKE-SGEWYTIRIRLIPWTDGH 862

Query: 553  CY-SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
                L  +DI+  KQ +     A + AE+ +  KS+FLA +SHEIRTP+  ++G S+++ 
Sbjct: 863  YVRLLVANDITVLKQAQEASRQAMEQAERANRAKSEFLATMSHEIRTPMNVVVGMSDILL 922

Query: 612  NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
                  L NP+  ++   I ++G  +LD++ND+LD+SKIE+G++ L     +    + + 
Sbjct: 923  E----SLPNPQAQKHIQLIQKAGTTLLDLINDILDLSKIEAGQLELEHAVFNPILLIEDT 978

Query: 672  ISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
            I++ Q+ A  K + + +S   +IP  ++ D   ++QI +N+L NAI FT  G  + +   
Sbjct: 979  IAIFQMQAKLKGLTLTSSMTGHIPHALMGDRARLRQILVNLLGNAIKFTEKGS-VEVQAG 1037

Query: 731  HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
            + +N++    V D+GVG+ +  L +    F Q  +    R  G+GLGL + K +++   G
Sbjct: 1038 Y-ANQQFWYAVVDSGVGIGSDSLLRIFDKFTQADSGVARRFGGSGLGLAICKNLMELMGG 1096

Query: 791  KFYIFSTPAKGTLIEIIF--PLYDTSHPHDCI 820
                 ST  +G+        P+ D   P D +
Sbjct: 1097 TIETQSTLGQGSRFYCAIPAPIADHLLPSDVV 1128



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 46/348 (13%), Positives = 108/348 (31%), Gaps = 16/348 (4%)

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
           VS+     A  D   K            SL     +   N    T K +   L+   ++ 
Sbjct: 182 VSAKPLDAAQVDVTQKLVASHAGIWLLMSLILGLVWRRHNRYVETIKAHEQQLETRVQDR 241

Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVD 358
            + L   N        +   +   + +D    P  V      +   N +      Y    
Sbjct: 242 TDALRQAND-----RLERDRSQLQQIIDGVSEPLMVIRTDYRIVLMNEAARS---YNPEL 293

Query: 359 DIEIAGGLSTLLDAPKLSDNNA-IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
             + A     L+   + +       P  L +  RT          I  +   +  ++   
Sbjct: 294 ATKQANCYCHLMTHQRNTPCEGHDHPCPLEQVVRTQQPFRTVHRHINRDG-LARFVSLQA 352

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
               +Q            +  +    + +++ E     +I++A S    +++ +G ++  
Sbjct: 353 SPLFDQNGALWAIIESSRDITEYMSMQEQLKQESDTSNAIIDALSGLFILLDADGCLVRW 412

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
           N  ++K+ G   +    +    F+   + +     + ++L+  L     + +   T   +
Sbjct: 413 NSNLAKMTGLDEQSFAGRSILDFVAPTSRNAFIEAMEKVLTEGLAT---QESYLQTMGRQ 469

Query: 538 LLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
            +     I ++        S    DISE    ++ L  ++ I ++   
Sbjct: 470 QIPFAFQINRIEIEGKLYLSGMGVDISEQLSMRHALQESQDILDQVQK 517



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/362 (11%), Positives = 94/362 (25%), Gaps = 20/362 (5%)

Query: 234 LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293
            R+  +              L +     LT    +   ++       +            
Sbjct: 53  ARVTAETQPNPFLKNLPQRDLTSTDGVALTLINPAYMTRQIAELARHSGMLFHITSLKPL 112

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTK 353
             +     + +       +   +  E L             +Y +    Y   S L    
Sbjct: 113 RPANRPDNWEAEALKRFETNPSERLERLGHG-------DSALYRYMAPLYVEQSCLKCHA 165

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
            +     +I GG+S  + A  L          L  S        + +  + W R N    
Sbjct: 166 TQGYQLGDIRGGISITVSAKPLDAAQVDVTQKLVASHAGIWLLMSLILGLVWRRHNRYVE 225

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
           T    E+  +       + +       R    ++E +  QL  I++  S+ + +I  +  
Sbjct: 226 TIKAHEQQLETRVQDRTDAL-------RQANDRLERDRSQLQQIIDGVSEPLMVIRTDYR 278

Query: 474 ILSTNRAVS----KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
           I+  N A      +L                            L +++            
Sbjct: 279 IVLMNEAARSYNPELATKQANCYCHLMTHQRNTPCEGHDHPCPLEQVVRTQQPFRTVHRH 338

Query: 530 LGSTKEEKLLSLRIIIKKLPFSSCYSLT--MHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
           +      + +SL+         + +++     DI+E+   + +L      +       S 
Sbjct: 339 INRDGLARFVSLQASPLFDQNGALWAIIESSRDITEYMSMQEQLKQESDTSNAIIDALSG 398

Query: 588 FL 589
             
Sbjct: 399 LF 400


>gi|229141313|ref|ZP_04269851.1| hypothetical protein bcere0013_44060 [Bacillus cereus BDRD-ST26]
 gi|228642094|gb|EEK98387.1| hypothetical protein bcere0013_44060 [Bacillus cereus BDRD-ST26]
          Length = 558

 Score =  366 bits (939), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 91/388 (23%), Positives = 180/388 (46%), Gaps = 26/388 (6%)

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           +           +   + +  +E E    +L +++E    G+ +I+  G I   NR+  +
Sbjct: 187 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 246

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542
            F    E+ L + +           +   + EI   +++   + +  LG  ++   +   
Sbjct: 247 TFHVTDEEYLDRLYYESFHH---PEIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 303

Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
            II          L  HDI+E K+ +                + DFLA VSHE++TP+T+
Sbjct: 304 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 349

Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           I GFSE + +   G + N ++ E + + I +    +  ++ DLLD+SKIE     L+   
Sbjct: 350 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGT 406

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           V +   + +   ++   A EK I ++ +    +  ++ D   ++QI +N+++NAI +TP+
Sbjct: 407 VDMKGLLEDIHMVLDNKAGEKEISLQVNALKRV-SVIGDPSRLQQIFINLMNNAIVYTPA 465

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           GG + +           ++V DTG+G++  E+ +  + F ++  ++     GTGLGL + 
Sbjct: 466 GGVVSVEL-VEDKYNAYIKVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIV 524

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           K +V+A+ G   + S   +GT   ++ P
Sbjct: 525 KHLVEAHHGTITVDSEIGEGTTFTVVLP 552


>gi|222098049|ref|YP_002532106.1| phosphate regulon sensor protein [Bacillus cereus Q1]
 gi|221242107|gb|ACM14817.1| phosphate regulon sensor protein [Bacillus cereus Q1]
          Length = 587

 Score =  366 bits (939), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 91/388 (23%), Positives = 180/388 (46%), Gaps = 26/388 (6%)

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           +           +   + +  +E E    +L +++E    G+ +I+  G I   NR+  +
Sbjct: 216 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 275

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542
            F    E+ L + +           +   + EI   +++   + +  LG  ++   +   
Sbjct: 276 TFHVTDEEYLDRLYYESFHH---PEIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 332

Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
            II          L  HDI+E K+ +                + DFLA VSHE++TP+T+
Sbjct: 333 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 378

Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           I GFSE + +   G + N ++ E + + I +    +  ++ DLLD+SKIE     L+   
Sbjct: 379 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGT 435

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           V +   + +   ++   A EK I ++ +    +  ++ D   ++QI +N+++NAI +TP+
Sbjct: 436 VDMKGLLEDIHMVLDNKAGEKEISLQVNALKRV-SVIGDPSRLQQIFINLMNNAIVYTPA 494

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           GG + +           ++V DTG+G++  E+ +  + F ++  ++     GTGLGL + 
Sbjct: 495 GGVVSVEL-VEDKYNAYIKVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIV 553

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           K +V+A+ G   + S   +GT   ++ P
Sbjct: 554 KHLVEAHHGTITVDSEIGEGTTFTVVLP 581


>gi|206977124|ref|ZP_03238023.1| sensory box histidine kinase PhoR [Bacillus cereus H3081.97]
 gi|206744609|gb|EDZ56017.1| sensory box histidine kinase PhoR [Bacillus cereus H3081.97]
          Length = 587

 Score =  366 bits (939), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 91/388 (23%), Positives = 180/388 (46%), Gaps = 26/388 (6%)

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           +           +   + +  +E E    +L +++E    G+ +I+  G I   NR+  +
Sbjct: 216 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 275

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542
            F    E+ L + +           +   + EI   +++   + +  LG  ++   +   
Sbjct: 276 TFHVTDEEYLDRLYYESFHH---PEIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 332

Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
            II          L  HDI+E K+ +                + DFLA VSHE++TP+T+
Sbjct: 333 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 378

Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           I GFSE + +   G + N ++ E + + I +    +  ++ DLLD+SKIE     L+   
Sbjct: 379 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGT 435

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           V +   + +   ++   A EK I ++ +    +  ++ D   ++QI +N+++NAI +TP+
Sbjct: 436 VDMKGLLEDIHMVLDNKAGEKEISLQVNALKRV-SVIGDPSRLQQIFINLMNNAIVYTPA 494

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           GG + +           ++V DTG+G++  E+ +  + F ++  ++     GTGLGL + 
Sbjct: 495 GGVVSVEL-VEDKYNAYIKVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIV 553

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           K +V+A+ G   + S   +GT   ++ P
Sbjct: 554 KHLVEAHHGTITVDSEIGEGTTFTVVLP 581


>gi|217962067|ref|YP_002340637.1| sensory box histidine kinase PhoR [Bacillus cereus AH187]
 gi|217064897|gb|ACJ79147.1| sensory box histidine kinase PhoR [Bacillus cereus AH187]
          Length = 587

 Score =  366 bits (939), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 91/388 (23%), Positives = 180/388 (46%), Gaps = 26/388 (6%)

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           +           +   + +  +E E    +L +++E    G+ +I+  G I   NR+  +
Sbjct: 216 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 275

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542
            F    E+ L + +           +   + EI   +++   + +  LG  ++   +   
Sbjct: 276 TFHVTDEEYLDRLYYESFHH---PEIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 332

Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
            II          L  HDI+E K+ +                + DFLA VSHE++TP+T+
Sbjct: 333 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 378

Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           I GFSE + +   G + N ++ E + + I +    +  ++ DLLD+SKIE     L+   
Sbjct: 379 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLNMGT 435

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           V +   + +   ++   A EK I ++ +    +  ++ D   ++QI +N+++NAI +TP+
Sbjct: 436 VDMKGLLEDIHMVLDNKAGEKEISLQVNALKRV-SVIGDPSRLQQIFINLMNNAIVYTPA 494

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           GG + +           ++V DTG+G++  E+ +  + F ++  ++     GTGLGL + 
Sbjct: 495 GGVVSVEL-VEDKYNAYIKVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIV 553

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           K +V+A+ G   + S   +GT   ++ P
Sbjct: 554 KHLVEAHHGTITVDSEIGEGTTFTVVLP 581


>gi|197311343|gb|ACH61904.1| putative blue light receptor protein [bacterium enrichment culture
            clone pWThLOV]
          Length = 1204

 Score =  365 bits (938), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 124/753 (16%), Positives = 279/753 (37%), Gaps = 38/753 (5%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGKT 147
            +DA G   +        +     +M G  L +V        + N +   L    T     
Sbjct: 328  LDAEGRYVQCGTAAQHLLHMPFEQMRGASLEEVLPPAVAVQHKNALQRALATG-TLQRVE 386

Query: 148  TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                  G       +   +P+       SG +   IV             + + +     
Sbjct: 387  YELQPMGDPTTRTFEGRFMPM-------SGTQVLLIVRDLTELRTMERELQIMHRAIEGE 439

Query: 208  HEIKKGHSSVEKEKYDIFSQQSPPPHLRM--KNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
              +      V    + +         L    +++V      +    +  +     +  + 
Sbjct: 440  ASLPITVVDVLAPDHPVVYVNPAFERLTGYGRDEVLGRNCRFLQGPETDQPALGQVREAL 499

Query: 266  ESSLPEQEDFH--TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
                      H    + +++  + +   + ++      ++  +   +  +   E   ++ 
Sbjct: 500  RHGRSTTVVLHNYRKDGSRFINELHIAPVHDSHGRVTHFIGVQTDITERSIAAERLRVSE 559

Query: 324  ETVDK----CPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
            E              V + G+ +   NP+   +      + +   G    LL        
Sbjct: 560  ELYRSVALSISDGLMVVTSGSYVVAVNPAACRILDATMEELVMAPGL--ELLTESLQPLP 617

Query: 379  NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA-NQFPENMPQNGIEPED 437
             A  PV    +       + R++ ++        +             + +       + 
Sbjct: 618  PAEHPVARALASGE--PVTERVYGLRRRDGQIRWLGVSAQPLRMAPHDKPLSAVVTFRDI 675

Query: 438  VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP- 496
               RI ++ + +   +    +E + DG+   +     +  +R   +L GY   ++   P 
Sbjct: 676  TQQRIAEQALSMSEQRWKFAIEGSGDGVWDWDAVADRVYYSRRWKELLGYQEHELTDSPE 735

Query: 497  -FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII---IKKLPFSS 552
             ++  +       +   L  +   D+            +  + L +      +++     
Sbjct: 736  EWSSRVHPEDLPRVLEKLE-LHLKDVVPVYHSEHRLRHRSGRWLWVFERGRVVQRNEQGR 794

Query: 553  --CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
                  T  DI+  K+ +  L   K+ AE  S  K++FL+R+SHE+RTPL A+IGFS+++
Sbjct: 795  ALRIVGTYSDITRLKEAEKALRD-KQAAELASRSKTEFLSRMSHEMRTPLNAMIGFSQLL 853

Query: 611  KNQRFGPLGNPRY-IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
            K        +      YA+++ ++G  +L ++ND+LD+ ++E+G++ ++ E +SL   + 
Sbjct: 854  KLSATNAQPSASQVRHYADHMLQAGQHLLALINDVLDLQRVETGQLTINIETISLRRTIE 913

Query: 670  EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
            +A+ L+   A+   +        ++  + AD + ++Q+ +NI+SNAI +    G + ++ 
Sbjct: 914  QALELLAPLAHASAVSFDNRIDEDVL-VRADAQRLRQVLINIISNAIKYNRPDGVVRLTL 972

Query: 730  THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
                 + + + + DTG G+   +L +  +PF ++        EGTGLGL +AK ++D   
Sbjct: 973  GDRQGDAIDVLIEDTGEGLRPDQLARLFQPFERLGRETSP-IEGTGLGLIIAKRLIDEMK 1031

Query: 790  GKFYIFSTPAKGTLIEIIFPLYD---TSHPHDC 819
            G   + S P KGT + ++  L +    + PH+ 
Sbjct: 1032 GSIEVSSEPGKGTCVTLMVRLAEQAPAALPHEA 1064



 Score =  167 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 65/540 (12%), Positives = 165/540 (30%), Gaps = 39/540 (7%)

Query: 71  ENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS----DILH 126
           +   V         + W  DA G     S  +    G      +G    ++     D  H
Sbjct: 170 QEARVRTASRAGSDWLWETDAQGRFTWASASMETHTGLRIEDKLGKLPHEILLRRDDPEH 229

Query: 127 IDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIV-- 184
               +      +++  ++         G    V + +  +P++     F G+RG   V  
Sbjct: 230 ARSYDRYLAAREQREPFFNLIADMRTPGGL--VTVAVNGVPVFDSAGRFRGYRGATRVVT 287

Query: 185 -------HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL--R 235
                            A  +  + + + + +       V   +       +   HL   
Sbjct: 288 AEIEAQRQAREAQALREAQLRESEARTAAVLQSLPDLWFVLDAEGRYVQCGTAAQHLLHM 347

Query: 236 MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN 295
              ++   +        V    K  L  +  +   ++ ++    +   T + + G     
Sbjct: 348 PFEQMRGASLEEVLPPAVAVQHKNALQRALATGTLQRVEYELQPMGDPTTRTFEGRFMPM 407

Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTPETVD---KCPIPF--FVYSHGNLFYANPSFLL 350
           S    + L      +     +    +    ++     PI     +     + Y NP+F  
Sbjct: 408 SG--TQVLLIVRDLTELRTMERELQIMHRAIEGEASLPITVVDVLAPDHPVVYVNPAFER 465

Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
           LT Y   + +    G +        +D  A+  V               LH  + +    
Sbjct: 466 LTGYGRDEVL----GRNCRFLQGPETDQPALGQVREALRHGRSTTV--VLHNYRKDGSRF 519

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470
           +          +         G++ +  +  I   ++ +      S+  + SDG+ ++  
Sbjct: 520 IN-ELHIAPVHDSHGRVTHFIGVQTDITERSIAAERLRVSEELYRSVALSISDGLMVVTS 578

Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV--MNHYLTEILSLDLRQTLEKI 528
              +++ N A  ++    +E+++  P    L ++   +    H +   L+       E++
Sbjct: 579 GSYVVAVNPAACRILDATMEELVMAPGLELLTESLQPLPPAEHPVARALASGEP-VTERV 637

Query: 529 TLGSTKEEKLLSLRIIIKKLPFSSC-----YSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
                ++ ++  L +  + L  +         +T  DI++ +  +  LS +++  +    
Sbjct: 638 YGLRRRDGQIRWLGVSAQPLRMAPHDKPLSAVVTFRDITQQRIAEQALSMSEQRWKFAIE 697



 Score = 98.9 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 43/417 (10%), Positives = 96/417 (23%), Gaps = 44/417 (10%)

Query: 191 NDPRALGKRLDKKFSHLHEIKKG--------HSSVEKEKYDIFSQQSPPPHLRMKNKVSS 242
           +    L  R+ +       +           H +   E     +  +      +   V  
Sbjct: 33  DAAVRLLARMARVPIATLSLVDAGRVWFKAIHGAELDELSRDQTCCTWTIAGDVPFLVDD 92

Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQE----DFHTINLNQYTKKQYFGTLQNNSKE 298
           LT           T    +       L  ++        +++      +      ++   
Sbjct: 93  LTADPRFAGVRTVTGAPYVRAYAGLPLTVEDQRIGALAVLDVQPRHFGEAELAALHDVGR 152

Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSV 357
               L             E    T           +     G   +A+ S    T  +  
Sbjct: 153 LVCELLKARLKEQRWRLQEARVRTASRAGS--DWLWETDAQGRFTWASASMETHTGLRIE 210

Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
           D +        L         +  + +             A + T        + +    
Sbjct: 211 DKLGKLPHEILLRRDDPEHARSYDRYLAAREQREPFFNLIADMRTP----GGLVTVAVNG 266

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEI----EVMQLC-------SILEATSDGIA 466
               +         G           +R+          QL        ++L++  D   
Sbjct: 267 VPVFDSAGRFRGYRGATRVVTAEIEAQRQAREAQALREAQLRESEARTAAVLQSLPDLWF 326

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
           +++ EG  +    A   L   P E +        L         + L   L+    Q +E
Sbjct: 327 VLDAEGRYVQCGTAAQHLLHMPFEQMRGASLEEVLPPAVAVQHKNALQRALATGTLQRVE 386

Query: 527 KIT------LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI 577
                       T E + + +              L + D++E +  + +L    + 
Sbjct: 387 YELQPMGDPTTRTFEGRFMPMSGT--------QVLLIVRDLTELRTMERELQIMHRA 435



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 60/494 (12%), Positives = 132/494 (26%), Gaps = 78/494 (15%)

Query: 112 KMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLA-----AL 166
             +G  +C++      +    + +   R  +  G   LW  +    +     +      L
Sbjct: 148 HDVGRLVCELLKARLKEQRWRLQEARVRTASRAGSDWLWETDAQGRFTWASASMETHTGL 207

Query: 167 PIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFS 226
            I  +  +                     L +R D + +  ++         +  +++ +
Sbjct: 208 RIEDKLGKLPH----------------EILLRRDDPEHARSYDRYLAAREQREPFFNLIA 251

Query: 227 QQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKK 286
               P  L                   +     P+  S       +     +      ++
Sbjct: 252 DMRTPGGLVT-----------------VAVNGVPVFDSAGRFRGYRGATRVVTAEIEAQR 294

Query: 287 QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYAN 345
           Q                +        A   E E  T   +   P  +FV    G      
Sbjct: 295 Q----------------AREAQALREAQLRESEARTAAVLQSLPDLWFVLDAEGRYVQCG 338

Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405
            +   L      + +  A     L   P          +    +  T       L  +  
Sbjct: 339 TAAQHLLHM-PFEQMRGASLEEVL---PPAVAVQHKNALQRALATGTLQRVEYELQPMGD 394

Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465
               +    F+P               I  +  + R  +R+++I      +I    S  I
Sbjct: 395 PTTRTFEGRFMPMSG-------TQVLLIVRDLTELRTMERELQIMH---RAIEGEASLPI 444

Query: 466 AIIN---REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522
            +++    +  ++  N A  +L GY  +++L +         T       + E L     
Sbjct: 445 TVVDVLAPDHPVVYVNPAFERLTGYGRDEVLGRNCRFLQGPETDQPALGQVREALRHGRS 504

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIA 578
            T+  +     K+       + I  +  S      +     DI+E      +L  ++++ 
Sbjct: 505 TTV--VLHNYRKDGSRFINELHIAPVHDSHGRVTHFIGVQTDITERSIAAERLRVSEELY 562

Query: 579 EKESSHKSDFLARV 592
              +   SD L  V
Sbjct: 563 RSVALSISDGLMVV 576


>gi|189423637|ref|YP_001950814.1| chemotaxis protein CheR [Geobacter lovleyi SZ]
 gi|189419896|gb|ACD94294.1| MCP methyltransferase, CheR-type with PAS/PAC sensor [Geobacter
            lovleyi SZ]
          Length = 1193

 Score =  365 bits (938), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 115/625 (18%), Positives = 233/625 (37%), Gaps = 26/625 (4%)

Query: 201  DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
            ++       +    S  + E  D  +         +  +V+ + +        L+     
Sbjct: 423  ERSDGLHFHVTLRPSDWQPEAGDCSNSNHHEVDSALHRRVADMEQELHSTRHSLQLTIEE 482

Query: 261  LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
            L +S E      E+  + N    +  +   ++  +       L HRN        D    
Sbjct: 483  LQSSNEKLDLANEELISSNEELQSTNEELKSVNEDLYAVNSELEHRNEELQRLNRDHDNL 542

Query: 321  LTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
            L    V       F+     +   + +     K    D       ++  L +P+      
Sbjct: 543  LASTEVGT----VFLDQQLRIRKFSSAISAFLKLLPQDLGRPIDHIAYELGSPQEFRERL 598

Query: 381  IKPVMLYRSDRTCI------AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
             + +         I          R+   + +  +   +     + +           + 
Sbjct: 599  QQVLESGLRHEQEIHTGADQWVLQRILPFRTDNGSIDGVVLTFTDISAVKQAQAAVAEMN 658

Query: 435  PEDVDTRINKR-KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
             +     I +  ++     ++ + +E +  G   +  + + +  N A+  + GY  E++L
Sbjct: 659  IQLEQKVIERTCELSASEARIRAFIENSGQGFWQLGPDRLTIDLNPALCSMLGYRREEML 718

Query: 494  RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553
             +    F++    S+  + +  I   + R           K+   + +            
Sbjct: 719  GRSPLEFVDAENRSIFLYQMGRIDGTEHR---NYEITLLHKDGHPVPVMFSATTHRTVEG 775

Query: 554  YS----LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                    + D+SE K+ + ++  AK+ AE  +  K+ FLA +SHE+RTPL  I+G S +
Sbjct: 776  KVDSAFAFITDLSEQKRVEQEIRAAKEAAESANRAKTQFLANISHEVRTPLNGIMGMSHL 835

Query: 610  IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
            +              +Y  ++D S   +L ++NDLLD+++IESG          LD+   
Sbjct: 836  LHMTPLA----DEQQDYLRHLDDSAQSLLSVINDLLDLTRIESGGFGTEQADFQLDQLAR 891

Query: 670  EAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQI-II 727
            + + + Q  A  K +L++   A+ +P  +      +KQ+  N++ NA+ FT  G  +  I
Sbjct: 892  DILRIHQPVAQRKGVLLQLELADGMPGLLRGVPLRLKQVLHNLVGNAVKFTDQGRVVLSI 951

Query: 728  STTHTSNE--EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
            S      +   V   V D+G+GM    +++   PF Q   S   R  GTGLGL + + + 
Sbjct: 952  SPIIVPGQSLRVRFAVCDSGIGMEPETIKRIFDPFSQADESISRRYGGTGLGLTICRRLT 1011

Query: 786  DANMGKFYIFSTPAKGTLIEIIFPL 810
            +   G   + STP +G+   +I P+
Sbjct: 1012 ELMGGTIEVESTPGQGSCFTVILPM 1036



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/245 (11%), Positives = 66/245 (26%), Gaps = 10/245 (4%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK 146
           W +       +++  L   +G    +M+G    +  D  +     +    +        +
Sbjct: 691 WQLGPDRLTIDLNPALCSMLGYRREEMLGRSPLEFVDAENRSIFLYQMGRIDGTEHRNYE 750

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
            TL   +G    VP+  +A    +   +      F  +             +   +    
Sbjct: 751 ITLLHKDGHP--VPVMFSATTHRTVEGKVD--SAFAFITDLSEQKRVEQEIRAAKEAAES 806

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
            +  K    +    +       +P   +   + +  +T     + D L         S  
Sbjct: 807 ANRAKTQFLANISHEVR-----TPLNGIMGMSHLLHMTPLADEQQDYL-RHLDDSAQSLL 860

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
           S + +  D   I    +  +Q    L   +++                  E  +  P  +
Sbjct: 861 SVINDLLDLTRIESGGFGTEQADFQLDQLARDILRIHQPVAQRKGVLLQLELADGMPGLL 920

Query: 327 DKCPI 331
              P+
Sbjct: 921 RGVPL 925


>gi|83311949|ref|YP_422213.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82946790|dbj|BAE51654.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 676

 Score =  365 bits (938), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 133/530 (25%), Positives = 230/530 (43%), Gaps = 24/530 (4%)

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTK 353
           +  +                 ++  +     +D        +   G +   NP+   L  
Sbjct: 142 DGGQLRILRDITQRKQAQISLEDTVSWLKGVMDTVVDGIVTIDETGTVLSFNPAAEKLFG 201

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
           + +   +    G+  L+  P+     A  P  L             +  ++ N       
Sbjct: 202 WSADQVVGRHVGM--LISDPRQDGRGAGFPAYLANGFPEAGPGGREVEGLRRNGTRFPM- 258

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV-------MQLCSILEATSDGIA 466
                       + +   G+  +  + R N+  +            +L  I++    G+A
Sbjct: 259 --ELAVAEMHQGDMLTFIGVIRDVSERRKNELALLDSKNRLSLQADRLQGIIDNMPQGVA 316

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTV-----FLEQNTPSVMN--HYLTEILSL 519
           +   +  +++ N +  ++ G P  +I      +      L  N          LT  L+ 
Sbjct: 317 VFASDDALIALNESAVRMLGLPQAEITPGTIDISLFMALLAANDTPPGRHSAQLTADLAE 376

Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579
            +R+  E +         ++ +R             L+  D+++ K+ +  L  AK  AE
Sbjct: 377 SVRERPEMVFEHFAPSGLIMEVRSSSMP---GGGLILSFTDVTDRKRVEQTLREAKDEAE 433

Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639
           + +  K+ FLA +SHE+RTPL AIIGFSE++K++ FGPL    Y  Y + I  SG  +L+
Sbjct: 434 RGNRAKNTFLANISHELRTPLNAIIGFSEMMKHEIFGPLEPASYRTYVDDIHESGMHLLE 493

Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA 699
           ++ND+LD+SK E+G  +L    V + + V  AI L+   A    I +       +P +LA
Sbjct: 494 LINDILDMSKAEAGMTDLMEAAVHVPDLVRGAIRLLTRRAENAGITLSEDLPPTLPLLLA 553

Query: 700 DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKP 759
           D R ++Q+ LN+ SNA+ FT  GG + I    T    + + V DTG+GMT  EL + M+P
Sbjct: 554 DERRLRQVILNLGSNAVKFTDDGGAVTIGAKVTEAGFI-ITVADTGIGMTPEELLRVMEP 612

Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           F Q       + EG+GLGLPLAKA++ A+ G  ++ S P +GT+  + FP
Sbjct: 613 FVQADTRLSRKYEGSGLGLPLAKALICAHGGTLHLDSQPGRGTVATVTFP 662



 Score = 54.3 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 15/128 (11%), Positives = 41/128 (32%), Gaps = 6/128 (4%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG-YPVEDILRKPFTVFLEQN 504
            +E +   L + L  + DG+A+ ++   +++ N    +L        +    F   + + 
Sbjct: 39  ALESQRQLLEA-LGNSRDGVALYDKTNRLITCNERYRQLLSPIKESLVPGARFEDLMAEL 97

Query: 505 TPSVMNHYLT-EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                               T    +    ++ + +++                + DI++
Sbjct: 98  ANLEHMDAAWLGRKLSGGGLTDATASDDKFRDGQWITVNAYATL---DGGQLRILRDITQ 154

Query: 564 WKQEKNKL 571
            KQ +  L
Sbjct: 155 RKQAQISL 162



 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/204 (12%), Positives = 58/204 (28%), Gaps = 12/204 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTWYG-- 145
           ID  G +   +    K  G  A +++G  +  +      D         L       G  
Sbjct: 183 IDETGTVLSFNPAAEKLFGWSADQVVGRHVGMLISDPRQDGRGAGFPAYLANGFPEAGPG 242

Query: 146 --KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +       GT    P++LA   ++    +   F   G++                  +
Sbjct: 243 GREVEGLRRNGT--RFPMELAVAEMH--QGDMLTF--IGVIRDVSERRKNELALLDSKNR 296

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPP-PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
            S   +  +G      +   +F+             ++  L +       +  +    LL
Sbjct: 297 LSLQADRLQGIIDNMPQGVAVFASDDALIALNESAVRMLGLPQAEITPGTIDISLFMALL 356

Query: 263 TSEESSLPEQEDFHTINLNQYTKK 286
            + ++         T +L +  ++
Sbjct: 357 AANDTPPGRHSAQLTADLAESVRE 380


>gi|332140190|ref|YP_004425928.1| PAS signal transduction protein [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327550212|gb|AEA96930.1| PAS signal transduction protein [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 962

 Score =  365 bits (938), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 110/508 (21%), Positives = 213/508 (41%), Gaps = 23/508 (4%)

Query: 323 PETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
            + +DK  +   +   G +  AN     L+ +   + +        + +      +    
Sbjct: 8   RQAMDKHGMVVTMDVKGKILSANEKCSELSGFAEHEIVGKYITAFDITNISNSDISAIFS 67

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
            + L             +H+++   E    +         + P       I  +    + 
Sbjct: 68  ALALGNI------WQGEVHSLRKTGEPWF-VFATVVPVVKKAPLVDHLIVIATDISQQKR 120

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            ++ +        SI ++  +G+  +N EG     N A S+L G+ +E++  + F   + 
Sbjct: 121 LEKSLSEGRAFYRSITDSIGEGVYAVNAEGKTQFLNPAASRLLGWTLEELQDRRFHDTVH 180

Query: 503 QNTPSVMNHYLTE----ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCY 554
                       +    +   D +         + K  +L  + I+   L  +      +
Sbjct: 181 YQKGDGTLLKREQCPVNLTIRDGKSYTSYEDFFTDKRGRLFPISIVAVPLLNNEGKPDGH 240

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
               +DIS  K  ++KL  A   A+  +  K+DFLA +SHEIRTP+ AIIG + +    +
Sbjct: 241 VGVFNDISSQKAIEHKLQKAYDEAQSANKAKTDFLATMSHEIRTPMNAIIGLTHLALETQ 300

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                N +  +Y   + +S N +L+++N +LD SK+E+ K+++  EP +L + + +   +
Sbjct: 301 ----DNDQRQQYLEKVQKSSNALLELMNSILDFSKVEANKIDILDEPFTLTKTIDKLAQV 356

Query: 675 VQLYANEKRILIRTSF-ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
            Q+ A +K++ +      +   R   D   + Q+ LN+LSNAI FT +G  +++      
Sbjct: 357 FQVKAQQKQLQLLFDIRCSTKIRCSGDSEKIYQVLLNLLSNAIKFTETG-HVLLKIDKR- 414

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
             E+   V DTG+G+++    K    F Q   S   +  GTGLGL + K +V+   G+  
Sbjct: 415 GNELGFSVSDTGMGISDTGKTKLFNAFEQADASISRKFGGTGLGLAICKRLVELMGGELT 474

Query: 794 IFSTPAKGTLIEIIFPL-YDTSHPHDCI 820
           I S   +GT      P+  + + P D +
Sbjct: 475 IESKVNEGTNFAFSLPICIEDTEPSDSL 502



 Score = 43.5 bits (101), Expect = 0.15,   Method: Composition-based stats.
 Identities = 14/150 (9%), Positives = 44/150 (29%), Gaps = 11/150 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL------LKR 139
            + ++A G  + ++    + +G    ++   R  D       D      +       ++ 
Sbjct: 143 VYAVNAEGKTQFLNPAASRLLGWTLEELQDRRFHDTVHYQKGDGTLLKREQCPVNLTIRD 202

Query: 140 QNTW-YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
             ++   +       G     PI + A+P+ +   +  G    G+ +            +
Sbjct: 203 GKSYTSYEDFFTDKRGRLF--PISIVAVPLLNNEGKPDGH--VGVFNDISSQKAIEHKLQ 258

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228
           +   +    ++ K    +    +       
Sbjct: 259 KAYDEAQSANKAKTDFLATMSHEIRTPMNA 288


>gi|166711696|ref|ZP_02242903.1| two-component system sensor protein [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 1364

 Score =  365 bits (938), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 130/700 (18%), Positives = 251/700 (35%), Gaps = 51/700 (7%)

Query: 164 AALPIYSRNREFSGFR-----GF----GIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214
           +  PI +      G+R     GF    GI         P+               +++  
Sbjct: 185 SGEPIMTSPISLFGYRVPSESGFLVLLGIYREGMPLQTPQQRMVATSGWVYAPFSVEQIV 244

Query: 215 SSVEKEKYDI-FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE 273
            S   E+ DI               +  +     A +  V+K       T   ++ P   
Sbjct: 245 QSALGERDDIALDMSDRNEPTHNFYRSGTPAIDSALRPPVVKLLPMYGRTWVITAHPTAS 304

Query: 274 DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF 333
              ++N N            +    +   L   N         +   L            
Sbjct: 305 FIASLNQNSPWLIGGLVMAGSVLFAALLVLYFSNGLRREEVLRKQMELAALVSHSSEAIV 364

Query: 334 FVYSHGNLFYANPSFLLLTKYKSVDDI---------EIAGGLSTLLDAPKLSDNNAIKPV 384
                G + + NP+   +  Y + + I           A  +  +  A      NA    
Sbjct: 365 AETPDGRITHWNPAAEAMFGYTAEEAIDQELTMLLAPQAYAMPEIDHADAALAANAWAAQ 424

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
            +   D   +   A    I    E +L+     F   +    +  +       ++ ++ +
Sbjct: 425 TMRHRDGHQVHVLASKSPI-IESEGTLSGHSHFFRDISDRVRSHQRIIDLNASLEHQVAE 483

Query: 445 R--KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
           R  ++    +   +IL      I   +  G +   N A  K+ GY   +++ +       
Sbjct: 484 RTSELVKFSVLQRAILAHAGYAIIATDSSGFVTLFNPAAEKMLGYNAAEVIGRRKASQFI 543

Query: 503 QNTPSVMNH-YLTEILSLDLRQTLEK-------------ITLGSTKEEKLLSLRIIIKKL 548
           +          L +     +  TLE                   + + + L + + +  L
Sbjct: 544 EQDELQERARMLADQTGTPVAHTLEAIAALTSLGRSDTSEWTYVSHDGRRLPVLLTLSTL 603

Query: 549 PFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
                    Y     D++E K  + +L  A   A+  +  KSDFLA +SHEIRTP+ AI+
Sbjct: 604 RDDHDQVIGYLGVAVDLTEQKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAIL 663

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           G   +++             +    IDRS   +L+I+ND+LD SKIE+G+++L   P  L
Sbjct: 664 GMLYLLQRSELPGAA----QDMVAKIDRSARTLLEIINDILDFSKIEAGRIDLECAPFDL 719

Query: 665 DEAVSEAISLVQLYANEKRILIRTS-FANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
           ++       L++   + K + +       +   +L D   + Q+ +N++ NAI FT  G 
Sbjct: 720 NQLFDNIAELMRSSLSAKPVEMIVEPLPRDSRWLLGDALRINQVLVNLVGNAIKFTEQG- 778

Query: 724 QIIISTTHTSNEE-----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
           ++++S     + +     ++  VRDTG+G++  +      PF Q   S   R  G+GLGL
Sbjct: 779 EVVLSVRRFPSGDPNKFKLLFSVRDTGIGISKEKQSLIFSPFLQADTSTSRRYGGSGLGL 838

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
            +++ +++   G+  + S P +G+    +  L  ++ P +
Sbjct: 839 TISRRLIELMGGELEVESVPGRGSEFYFVITLEKSAPPQE 878



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/375 (8%), Positives = 82/375 (21%), Gaps = 12/375 (3%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150
             G +   +       G  A + I   L  +                      +   T+ 
Sbjct: 368 PDGRITHWNPAAEAMFGYTAEEAIDQELTMLLAPQAYAMPEIDHADAALAANAWAAQTMR 427

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
             +G  ++  +  +  PI       SG   F                  L+    H  ++
Sbjct: 428 HRDGHQVH--VLASKSPIIESEGTLSGHSHF--FRDISDRVRSHQRIIDLNASLEH--QV 481

Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270
            +  S + K      +  +   +  +    S     +    + +       +     +  
Sbjct: 482 AERTSELVKFSVLQRAILAHAGYAIIATDSSGFVTLFNPAAEKMLGYNAAEVIGRRKASQ 541

Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330
             E        +    Q    + +  +      S     +    +   +      +    
Sbjct: 542 FIEQDELQERARMLADQTGTPVAHTLEAIAALTSLGRSDTSEWTYVSHDGRRLPVLLTLS 601

Query: 331 IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390
                  H  +       + LT+ K  +        +        SD  A     +    
Sbjct: 602 T--LRDDHDQVIGYLGVAVDLTEQKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIRTPM 659

Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450
              +     L   +        +  I           +       +       +  +E  
Sbjct: 660 NAILGMLYLLQRSELPGAAQDMVAKID----RSARTLLEIINDILDFSKIEAGRIDLECA 715

Query: 451 VMQLCSILEATSDGI 465
              L  + +  ++ +
Sbjct: 716 PFDLNQLFDNIAELM 730



 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/283 (8%), Positives = 65/283 (22%), Gaps = 23/283 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMR-LCDVSDILHIDPNNH---------IGDLLK 138
            D+ G++   +    K +G  A ++IG R      +   +              +   L+
Sbjct: 509 TDSSGFVTLFNPAAEKMLGYNAAEVIGRRKASQFIEQDELQERARMLADQTGTPVAHTLE 568

Query: 139 RQNTW----YGKTTLW-PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193
                       T+ W  +      +P+ L    +   + +  G+ G  +          
Sbjct: 569 AIAALTSLGRSDTSEWTYVSHDGRRLPVLLTLSTLRDDHDQVIGYLGVAV--DLTEQKLH 626

Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253
               +         ++ K    +    +              ++                
Sbjct: 627 EKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSELPGAAQDMVAKID 686

Query: 254 LKTEKYPLLTSEESSLPEQEDFH------TINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
                   + ++     + E           +LNQ           + S +  E +    
Sbjct: 687 RSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQLFDNIAELMRSSLSAKPVEMIVEPL 746

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLL 350
                    +   +    V+           G +  +   F  
Sbjct: 747 PRDSRWLLGDALRINQVLVNLVGNAIKFTEQGEVVLSVRRFPS 789


>gi|78048227|ref|YP_364402.1| two-component system sensor histidine kinase-response regulator
           hybridprotein [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78036657|emb|CAJ24348.1| two-component system sensor histidine kinase-response regulator
           hybridprotein [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 1364

 Score =  365 bits (938), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 129/706 (18%), Positives = 254/706 (35%), Gaps = 65/706 (9%)

Query: 164 AALPIYSRNREFSGFR-----GFGIV----HVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214
           +  P+ +     SG+R     GF ++            P+               +++  
Sbjct: 185 SGEPVMTSPISLSGYRVPSESGFLVLLAVYREGMPLQTPQQRMLATSGWVYAPFSVEQMV 244

Query: 215 SSVEKEKYDI-FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE 273
            S   E+ D+               +  +     A +  V++       T   ++ P   
Sbjct: 245 RSALGERDDVALDLSDRNEPTHNFYRSGTPASDSALRPPVVRLLPIYGRTWVITAHPTAG 304

Query: 274 DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF 333
              ++N +                 +   L   N         +   L            
Sbjct: 305 FVASLNQSSPWLIGGLVMAAAVLFAALLVLYFSNGLRREEVLRKQMELAALVSHSSEAIV 364

Query: 334 FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393
                G + + NP+   +  Y + + I+    L+ LL     +            +D   
Sbjct: 365 AETPDGRITHWNPAAEAMFGYTADEAIDQ--DLTMLLSPQPYAMPEVD------HADAAL 416

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK------- 446
              ++   T++    + + +                 +    +  D   + ++       
Sbjct: 417 AGNASAAQTMRHRDGHQVHVLASKAPIIESEGTLSGHSHFFRDISDRVRSHQRIIDLNAS 476

Query: 447 MEIEVMQ-----------LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
           +E +V +             +IL      I  I+  G +   N A  KL GY   +++ +
Sbjct: 477 LEHQVAERTSELVKFSVLQRAILAHAGYAIIAIDSSGFVTLFNPAAEKLLGYSAAEVIGR 536

Query: 496 P-FTVFLEQNTPSVMNHYLTEILSLDLRQTLEK-------------ITLGSTKEEKLLSL 541
              + F+E        H L E     +  TLE                   + + + L +
Sbjct: 537 RKASQFVEPEELQERAHMLAEQTGTPVAHTLEAIAALTSLGRSDTSEWTYVSHDGRRLPV 596

Query: 542 RIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
            + +  L         Y     D++E K  + +L  A   A+  +  KSDFLA +SHEIR
Sbjct: 597 LLTLSTLRDDHDQVIGYLGVAVDLTEQKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIR 656

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TP+ AI+G   +++             +    IDRS   +L+I+ND+LD SKIE+G+++L
Sbjct: 657 TPMNAILGMLYLLQRSELPGAA----QDMVAKIDRSARTLLEIINDILDFSKIEAGRIDL 712

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTS-FANNIPRILADLRSVKQIALNILSNAI 716
              P  L++       L++   + K + +       +   +L D   + Q+ +N++ NAI
Sbjct: 713 ECAPFDLNQLFDNIADLMRSSLSAKPVEMIVEPLPRDSRWLLGDALRINQVLVNLVGNAI 772

Query: 717 HFTPSGGQIIISTTHTSNEE-----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
            FT  G ++++S     + +     ++  VRDTG+G++  +      PF Q   S   R 
Sbjct: 773 KFTEQG-EVVLSVRRFPSGDPNKFKLLFSVRDTGIGISKEKQSVIFSPFLQADTSTSRRY 831

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
            G+GLGL +++ +V+   G+  + S P +G+    +  L  ++ P 
Sbjct: 832 GGSGLGLTISRRLVELMGGELEVESVPGRGSEFYFVVTLEKSAPPQ 877



 Score = 86.6 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 52/442 (11%), Positives = 126/442 (28%), Gaps = 55/442 (12%)

Query: 169 YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228
               REF G  G+G +H  RV     A   +  +        ++  +  + E+Y +   +
Sbjct: 99  RDYPREFPGVLGYGYIH--RVAPADEAAFLQAARADGAPDIHRRPLAPWDGERYMVLYFE 156

Query: 229 SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288
                 R      +                 P++TS  S    +    +  L      + 
Sbjct: 157 PESSGNRPLGIDIASEPRRRAAALQAARSGEPVMTSPISLSGYRVPSESGFLVLLAVYRE 216

Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSF 348
              LQ   +                                    +VY+  ++     S 
Sbjct: 217 GMPLQTPQQRMLATSG-----------------------------WVYAPFSVEQMVRSA 247

Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
           L      ++D  +          +   + ++A++P ++       +    R   I  +  
Sbjct: 248 LGERDDVALDLSDRNEPTHNFYRSGTPASDSALRPPVVR-----LLPIYGRTWVITAHPT 302

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDT----RINKRKMEIEVMQLCSILEATSDG 464
                +             M    +    +       + + ++  + M+L +++  +S+ 
Sbjct: 303 AGFVASLNQSSPWLIGGLVMAAAVLFAALLVLYFSNGLRREEVLRKQMELAALVSHSSEA 362

Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
           I     +G I   N A   +FGY  ++ + +  T+ L           +    +      
Sbjct: 363 IVAETPDGRITHWNPAAEAMFGYTADEAIDQDLTMLLSP--QPYAMPEVDHADAALAGNA 420

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEK 580
               T+   ++   + +      +  S            DIS+  +   ++       E 
Sbjct: 421 SAAQTM-RHRDGHQVHVLASKAPIIESEGTLSGHSHFFRDISDRVRSHQRIIDLNASLEH 479

Query: 581 ESSHKSDFL--------ARVSH 594
           + + ++  L        A ++H
Sbjct: 480 QVAERTSELVKFSVLQRAILAH 501



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/376 (9%), Positives = 85/376 (22%), Gaps = 14/376 (3%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI-LHIDPNNHIGDLLKRQNTWYGKTTL 149
             G +   +       G  A + I   L  +     +  P     D     N    +T  
Sbjct: 368 PDGRITHWNPAAEAMFGYTADEAIDQDLTMLLSPQPYAMPEVDHADAALAGNASAAQTMR 427

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
              +G  ++  +  +  PI       SG   F                  L+    H  +
Sbjct: 428 -HRDGHQVH--VLASKAPIIESEGTLSGHSHF--FRDISDRVRSHQRIIDLNASLEH--Q 480

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
           + +  S + K      +  +   +  +    S     +    + L       +     + 
Sbjct: 481 VAERTSELVKFSVLQRAILAHAGYAIIAIDSSGFVTLFNPAAEKLLGYSAAEVIGRRKAS 540

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
              E            +Q    + +  +      S     +    +   +      +   
Sbjct: 541 QFVEPEELQERAHMLAEQTGTPVAHTLEAIAALTSLGRSDTSEWTYVSHDGRRLPVLLTL 600

Query: 330 PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389
                   H  +       + LT+ K  +        +        SD  A     +   
Sbjct: 601 ST--LRDDHDQVIGYLGVAVDLTEQKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIRTP 658

Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449
               +     L   +        +  I           +       +       +  +E 
Sbjct: 659 MNAILGMLYLLQRSELPGAAQDMVAKID----RSARTLLEIINDILDFSKIEAGRIDLEC 714

Query: 450 EVMQLCSILEATSDGI 465
               L  + +  +D +
Sbjct: 715 APFDLNQLFDNIADLM 730



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/283 (9%), Positives = 69/283 (24%), Gaps = 23/283 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMR----------LCDVSDILHIDPNNHIGDLLK 138
           ID+ G++   +    K +G  A ++IG R          L + + +L       +   L+
Sbjct: 509 IDSSGFVTLFNPAAEKLLGYSAAEVIGRRKASQFVEPEELQERAHMLAEQTGTPVAHTLE 568

Query: 139 RQNTW----YGKTTLW-PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193
                       T+ W  +      +P+ L    +   + +  G+ G  +          
Sbjct: 569 AIAALTSLGRSDTSEWTYVSHDGRRLPVLLTLSTLRDDHDQVIGYLGVAV--DLTEQKLH 626

Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253
               +         ++ K    +    +              ++                
Sbjct: 627 EKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSELPGAAQDMVAKID 686

Query: 254 LKTEKYPLLTSEESSLPEQEDFH------TINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
                   + ++     + E           +LNQ           + S +  E +    
Sbjct: 687 RSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQLFDNIADLMRSSLSAKPVEMIVEPL 746

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLL 350
                    +   +    V+           G +  +   F  
Sbjct: 747 PRDSRWLLGDALRINQVLVNLVGNAIKFTEQGEVVLSVRRFPS 789


>gi|222086713|ref|YP_002545247.1| two-component sensor histidine kinase/response regulator hybrid
           protein [Agrobacterium radiobacter K84]
 gi|221724161|gb|ACM27317.1| two-component sensor histidine kinase/response regulator hybrid
           protein [Agrobacterium radiobacter K84]
          Length = 1092

 Score =  365 bits (938), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 138/762 (18%), Positives = 261/762 (34%), Gaps = 54/762 (7%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSD-ILHIDPNNHIGDLLKRQNTWYGKTTLW 150
                 +++   +         IG R  D+ +    +D  +     L   +        +
Sbjct: 34  DLRYVAVNQAYARFFRRDISDFIGNRSRDLFESGEEVDREDKERRSLVFGSEET--ALCF 91

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
              G         +  P   R         FGI           +   R         + 
Sbjct: 92  DPAGHVRSRVQIESFSPSEDR------LYVFGIFLDAPAVPSVFSSETRDVGIQGESVDE 145

Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270
              + ++ ++       +     L   N+  +     +  D + KTE     T  +    
Sbjct: 146 TGLYRTILEDLPVASFVRDASHRLIYSNEAYAAITGLSRADVLGKTEHEMFETGADDYFA 205

Query: 271 EQE------DFHTINLNQYTKKQYFGTLQNNSKESFEYLS-----------------HRN 307
           E E                 ++     +                                
Sbjct: 206 ENEQVLNEGRGLAFEGQVVDRQHVTHPIMTRINRVVTSDGKRYVVGSMNDISVLKLRETQ 265

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGL 366
                A  +         +   PI   ++    N+ Y N +F  +  +   +  E     
Sbjct: 266 LIEAQARAEALHQDLGSILRSMPIGVMIHDSDCNVEYTNDAFYDIWDFSKDERFEGRPVR 325

Query: 367 S----TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
                        +D   I  +   R + +  A       + +    S+ M         
Sbjct: 326 DLIVKHFELGRYGADAGDIDDIYQARMEASHNAGPNLQTEMSYADGKSVIMDSRRISNGR 385

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
                   + +  ++ +       +E     +     A S G+ I+ ++GII+  N A++
Sbjct: 386 TLVTYADISSVRQQEREISEAHLALERLGDLMTDATHAMSQGLLIL-QDGIIMLANDALT 444

Query: 483 KLFGYPVEDI-LRKPFTVFLEQNTPS----VMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
            +   P + + + K ++   +              L      ++        +     E+
Sbjct: 445 DMLLVPADCLAVGKHWSAAFDHCAARGDFGADPEALRFAWRENMAADKPVSMIFRVVGER 504

Query: 538 LLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
            + L   +     S  +++ + D++E K+ + +L      +E     KS+FLA +SHEIR
Sbjct: 505 WIQLEAAVS---ESRRWTVVLTDVTEMKKREAELQLLLARSEAADRAKSEFLANMSHEIR 561

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TP+  ++G +E++         + R   + + I +SGN +L I+ND+LD SKI++G+M L
Sbjct: 562 TPMNGVLGMAELLAKTDL----DARQKTFIDIIVKSGNALLTIINDILDFSKIDAGQMRL 617

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAI 716
                   EAV +  +L+   A EK I +       +P  +L D    +QI  N+L NAI
Sbjct: 618 RKAAFDPAEAVEDVATLLSSPAAEKDIELLVRATPAVPAMVLGDAGRFRQIVTNLLGNAI 677

Query: 717 HFTPSGGQ-IIISTTHTSNEEV--ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
            FT  G   + + +    N EV   LRV DTG+G++  +L+   + F Q+  S   R EG
Sbjct: 678 KFTERGHVLVEVDSQPIDNGEVMLTLRVEDTGLGISKEKLDSIFEKFSQVDASSTRRHEG 737

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
           TGLGL +   +VD   G   + S   KG+   +  P+   + 
Sbjct: 738 TGLGLAITAGLVDLFGGYLEVDSEWGKGSTFTVHLPMPPVAA 779



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/385 (9%), Positives = 97/385 (25%), Gaps = 28/385 (7%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           DA   L   +E      G     ++G    ++ +    D       +L        +  +
Sbjct: 164 DASHRLIYSNEAYAAITGLSRADVLGKTEHEMFETGADDYFAENEQVLNEGRGLAFEGQV 223

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK----------- 198
              +     +   +  +      R   G      V   R      A  +           
Sbjct: 224 VDRQHVTHPIMTRINRVVTSDGKRYVVGSMNDISVLKLRETQLIEAQARAEALHQDLGSI 283

Query: 199 -RLDKKFSHLHEIKKGHSSVEKEKYDI--FSQQSPPPHLRMKN------KVSSLTEYYAH 249
            R       +H+            YDI  FS+        +++      ++         
Sbjct: 284 LRSMPIGVMIHDSDCNVEYTNDAFYDIWDFSKDERFEGRPVRDLIVKHFELGRYGADAGD 343

Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
            DD+ +        +  +   E       ++   +++   G       +           
Sbjct: 344 IDDIYQARMEASHNAGPNLQTEMSYADGKSVIMDSRRISNGRTLVTYADISSVRQQEREI 403

Query: 310 -SLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
                  +   +L  +          +   G +  AN +   +      D + +    S 
Sbjct: 404 SEAHLALERLGDLMTDATHAMSQGLLILQDGIIMLANDALTDML-LVPADCLAVGKHWSA 462

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
             D      +    P  L  + R  +AA   +  I         +     +      E+ 
Sbjct: 463 AFDHCAARGDFGADPEALRFAWRENMAADKPVSMI------FRVVGERWIQLEAAVSESR 516

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQ 453
               +  +  + +  + ++++ + +
Sbjct: 517 RWTVVLTDVTEMKKREAELQLLLAR 541


>gi|239904806|ref|YP_002951544.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239794669|dbj|BAH73658.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 972

 Score =  365 bits (938), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 118/645 (18%), Positives = 223/645 (34%), Gaps = 55/645 (8%)

Query: 191 NDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK 250
              +A   R +K+F  L    K    + +         S          +  L      +
Sbjct: 204 EALQAELSRSEKRFRSLFHGNKAPFLLIEPFSGQIMDASAGAVGFYGYSLEELKGMNISQ 263

Query: 251 DDVLKTEKYPLLTSEESS---LPEQEDFHTINLNQYTKKQYFGTLQ--NNSKESFEYLSH 305
            ++L  E+   + +   S             N +  T +     ++              
Sbjct: 264 INMLAPEELASVRTLALSGYKQQFIFPHKLKNGDVKTVEVISTPVESGEKELLFSIVQDV 323

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAG 364
                      E        V+      ++    G     N +    T Y   + +    
Sbjct: 324 TARQQALEDLGESRERLRAVVENAAAAIYLADKSGRFVEVNAAAERQTGYAREELL---- 379

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
               +      + ++     ++    ++    +   H  + +      +           
Sbjct: 380 ---AMSIPDVDASSSMEGAAVVQAVMQSATGMTFESHHRRKDG-TIYPVEVRAVMLELHG 435

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI-ILSTNRAVSK 483
                  GI  +    +  +RK+      L ++L+     + +++     +L  NRA+ +
Sbjct: 436 --VPHALGIVSDLTSRKEAERKLAEANRTLAAVLDGIPALVNVVDVSTREVLFMNRALKE 493

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL-------------RQTLEKITL 530
             G      +             +     ++     +              R  L    L
Sbjct: 494 ALGRDGVGGVCHDVFRGKSCVCENCHLERMSVNTEGEAGVSVWEDRNPISGRWQLNHDRL 553

Query: 531 GSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
               + K + ++I +              DI + KQ +  L  +K+ AE  +  KS FLA
Sbjct: 554 LPWFDGKTVRVQISL--------------DIGQRKQAEEALRQSKEEAESANKAKSVFLA 599

Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650
            +SHEIRTPL  I+G  +++K        N    EY     RS N +  +++D+LD+S+I
Sbjct: 600 NMSHEIRTPLNGILGMLQLLKTTD----PNDEQKEYLLGAIRSTNRLTRLLSDILDVSRI 655

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIAL 709
           E+G+M +      +         L  + A  K +L+   + +N+P R++ D   ++QI  
Sbjct: 656 EAGRMQIVEAEFDIKMVRDSISELFDMEARGKGLLLEFRWNDNLPLRLIGDEVRLRQILF 715

Query: 710 NILSNAIHFTPSGGQIIISTTHTSNE-----EVILRVRDTGVGMTNYELEKAMKPFGQIP 764
           N++ NAI FT  G  I I              V++ V DTG+G++   L+   +PF Q  
Sbjct: 716 NLVGNAIKFTEKG-TIRIDACLLPRASDSSVRVLVTVGDTGIGISEEHLKDIFEPFVQAE 774

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            S   R +G GLGL + + +V    G   I STP +G+   +  P
Sbjct: 775 GSYTRRFQGAGLGLSIVRRLVKLLDGDISIDSTPGEGSTFYLSLP 819



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 48/468 (10%), Positives = 113/468 (24%), Gaps = 39/468 (8%)

Query: 93  GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPI 152
           G + + S       G    ++ GM +  ++  L  +    +  L                
Sbjct: 236 GQIMDASAGAVGFYGYSLEELKGMNISQINM-LAPEELASVRTLALSGYKQQFIFPHKLK 294

Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212
            G      +++ + P+ S  +E      F IV                 ++   + E   
Sbjct: 295 NGD--VKTVEVISTPVESGEKELL----FSIVQDVTARQQALEDLGESRERLRAVVENAA 348

Query: 213 GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS-EESSLPE 271
               +  +        +         +   L       D     E   ++ +  +S+   
Sbjct: 349 AAIYLADKSGRFVEVNAAAERQTGYAREELLAMSIPDVDASSSMEGAAVVQAVMQSATGM 408

Query: 272 QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD----EGENLTPETVD 327
             + H    +          +          L   +  +     +    E        +D
Sbjct: 409 TFESHHRRKDGTIYPVEVRAVMLELHGVPHALGIVSDLTSRKEAERKLAEANRTLAAVLD 468

Query: 328 KCPIPFFVYS--HGNLFYANPSFLLLTKYKSV-----DDIEIAGGLSTLLDAPKLSDNNA 380
             P    V       + + N +         V     D       +       ++S N  
Sbjct: 469 GIPALVNVVDVSTREVLFMNRALKEALGRDGVGGVCHDVFRGKSCVCENCHLERMSVNTE 528

Query: 381 IKPVMLYRSDRTCIAASARL---HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
            +  +    DR  I+   +L     + W    ++ +         +  E   +   E  +
Sbjct: 529 GEAGVSVWEDRNPISGRWQLNHDRLLPWFDGKTVRVQISLDIGQRKQAEEALRQSKEEAE 588

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIA----IINRE--------GIILSTNRAVS--- 482
              +     +     ++ + L     G+       +          G I STNR      
Sbjct: 589 SANKAKSVFLANMSHEIRTPLNGI-LGMLQLLKTTDPNDEQKEYLLGAIRSTNRLTRLLS 647

Query: 483 KLFGYPVEDI-LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
            +      +    +      +          L ++ +      LE   
Sbjct: 648 DILDVSRIEAGRMQIVEAEFDIKMVRDSISELFDMEARGKGLLLEFRW 695



 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/252 (9%), Positives = 67/252 (26%), Gaps = 14/252 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            +  D  G   E++    +  G    +++ M + DV     ++    +  +++       
Sbjct: 351 IYLADKSGRFVEVNAAAERQTGYAREELLAMSIPDVDASSSMEGAAVVQAVMQSATGMTF 410

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           ++     +GT   V +    L ++            GIV       +        ++  +
Sbjct: 411 ESHHRRKDGTIYPVEVRAVMLELHGVPHAL------GIVSDLTSRKEAERKLAEANRTLA 464

Query: 206 HLHEIKKGHSSVEKEKYD-IFSQQSPPPHLRMKNKVSSLTEYYAHKD----DVLKTEKYP 260
            + +      +V       +            ++ V  +            +    E+  
Sbjct: 465 AVLDGIPALVNVVDVSTREVLFMNRALKEALGRDGVGGVCHDVFRGKSCVCENCHLERMS 524

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
           + T  E+ +   ED + I+              +        +            +E   
Sbjct: 525 VNTEGEAGVSVWEDRNPISGRWQLNHDRLLPWFD---GKTVRVQISLDIGQRKQAEEALR 581

Query: 321 LTPETVDKCPIP 332
            + E  +     
Sbjct: 582 QSKEEAESANKA 593


>gi|46200979|ref|ZP_00055969.2| COG0642: Signal transduction histidine kinase [Magnetospirillum
            magnetotacticum MS-1]
          Length = 1666

 Score =  365 bits (938), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 126/679 (18%), Positives = 241/679 (35%), Gaps = 43/679 (6%)

Query: 151  PIEGTNLYVPIDLAALPIYSRNREF----SGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
            PIEG +    +  A LP+ +   E        R   +    +         +        
Sbjct: 519  PIEGRDR--DVLDAVLPVLAMRMEILARSERTRQLLLATQRQAGELTAQQERIQALLSEQ 576

Query: 207  LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
                      +         + +P     +   V S+    A +                
Sbjct: 577  DAIFDNAPMGIMYTASGRIQRANPAMAELLGYTVESMKGLEASRLFATADSYREFGGLVA 636

Query: 267  SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR---------NHPSLSAYFDE 317
              L   E  H          Q F  + +      E L                L     E
Sbjct: 637  PKLGAGEGIHQEWDLIRGDGQLFSAMISAKGVRLEGLERASIWIVEDITERKRLEREMRE 696

Query: 318  GENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
                    ++  P    +    G+  ++N     +      +++          D     
Sbjct: 697  SGERLRRILENSPAGVSINTEDGHSLFSNQRMAEMLATTP-EELSHRSATEFWFD----- 750

Query: 377  DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
              +  + +   R D       +R   ++ +      +      +       +       +
Sbjct: 751  PTDRQEFIATLRRDGYVRDYQSRF--VRADGTPITVLLASALTEFADGRYLVSWA---YD 805

Query: 437  DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
              + +  +  +     +  +I EA + GIA + +  +I+  N  + +LFGY   +++ + 
Sbjct: 806  ITERQKAEDAVRFAGAEQQAIFEAATVGIAFL-KNRVIVRGNPQLDRLFGYEPGELVGQS 864

Query: 497  FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII---IKKLPFSSC 553
              ++                 +L   +  ++      K+      RI    I     S  
Sbjct: 865  TRIWFP--DDESFADVGDAYEALSRGEVHQREQCYVRKDGTRFWCRISGSAIDPSDLSRG 922

Query: 554  YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
                + D+++ +     L+ A+ +AE  +  KSDFLA +SHEIRTP+ AIIG S +    
Sbjct: 923  AVWMLEDVTDARAAAEALAKARDVAEDAAKTKSDFLANMSHEIRTPMNAIIGMSHLALKT 982

Query: 614  RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
                  NPR  +Y   I +SG  +L I+ND+LD SKIE+GK+ +    V LD+ +    +
Sbjct: 983  EL----NPRQRDYVKKIQQSGQHLLGIINDILDFSKIEAGKLEVEVTEVHLDKVLENVGN 1038

Query: 674  LVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
            L+   A+ K + +       +P  ++ D   + Q+ +N  +NA+ FT  G +I+++    
Sbjct: 1039 LISDKASAKGLELLFDLGAGVPLDLMGDSLRLGQVLINYANNAVKFTEEG-EIVVAVRLL 1097

Query: 733  SN----EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
             +      +   VRDTG+G+T  +  +  + F Q   S   +  GTGLGL ++K + +  
Sbjct: 1098 EDLGAEVMLRFEVRDTGIGLTEEQKARLFQSFQQADTSTTRKFGGTGLGLAISKKLAELM 1157

Query: 789  MGKFYIFSTPAKGTLIEII 807
             G+  + S P +G+     
Sbjct: 1158 GGEVGVDSVPGEGSTFWFT 1176



 Score = 68.1 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 40/408 (9%), Positives = 94/408 (23%), Gaps = 25/408 (6%)

Query: 70  SENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP 129
           SE   +FD  P  + +T    A G ++  +  + + +G     M G+    +        
Sbjct: 574 SEQDAIFDNAPMGIMYT----ASGRIQRANPAMAELLGYTVESMKGLEASRLFATADSYR 629

Query: 130 N--NHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187
                +   L      + +  L   +G      I    + +    R         IV   
Sbjct: 630 EFGGLVAPKLGAGEGIHQEWDLIRGDGQLFSAMISAKGVRLEGLERA-----SIWIVEDI 684

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSSLTE 245
                     +   ++   + E      S+  E                    ++S  + 
Sbjct: 685 TERKRLEREMRESGERLRRILENSPAGVSINTEDGHSLFSNQRMAEMLATTPEELSHRSA 744

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE--YL 303
                D   + E    L  +      Q  F   +    T        +            
Sbjct: 745 TEFWFDPTDRQEFIATLRRDGYVRDYQSRFVRADGTPITVLLASALTEFADGRYLVSWAY 804

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIA 363
                                  +   +      +  +   NP    L  Y+  + +  +
Sbjct: 805 DITERQKAEDAVRFAGAEQQAIFEAATVGIAFLKNRVIVRGNPQLDRLFGYEPGELVGQS 864

Query: 364 GGLSTLLDAPKLSDNNAIKPVML----------YRSDRTCIAASARLHTIQWNRENSLAM 413
             +    D       +A + +             R D T          I  +  +  A+
Sbjct: 865 TRIWFPDDESFADVGDAYEALSRGEVHQREQCYVRKDGTRFWCRISGSAIDPSDLSRGAV 924

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
             +      +          +  +   +     +     ++ + + A 
Sbjct: 925 WMLEDVTDARAAAEALAKARDVAEDAAKTKSDFLANMSHEIRTPMNAI 972


>gi|228917226|ref|ZP_04080783.1| hypothetical protein bthur0012_44380 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228935895|ref|ZP_04098705.1| hypothetical protein bthur0009_43400 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228948312|ref|ZP_04110595.1| hypothetical protein bthur0007_44380 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228811299|gb|EEM57637.1| hypothetical protein bthur0007_44380 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228823663|gb|EEM69485.1| hypothetical protein bthur0009_43400 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228842427|gb|EEM87518.1| hypothetical protein bthur0012_44380 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 571

 Score =  365 bits (938), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 91/388 (23%), Positives = 179/388 (46%), Gaps = 26/388 (6%)

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           +           +   + +  +E E    +L +++E    G+ +I+  G I   NR+  +
Sbjct: 200 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 259

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542
            F    E+ L + +           +   + EI   +++   + +  LG  ++   +   
Sbjct: 260 TFHVTDEEYLDRLYYESFHHT---EIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 316

Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
            II          L  HDI+E K+ +                + DFLA VSHE++TP+T+
Sbjct: 317 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 362

Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           I GFSE + +   G + N ++ E + + I +    +  ++ DLLD+SKIE     L    
Sbjct: 363 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLSMGT 419

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           V +   + +   ++   A EK I ++ +    +  ++ D   ++QI +N+++NAI +TP+
Sbjct: 420 VDMKGLLEDIHMVLDNKAGEKEISLQVNTLKRV-SVIGDPSRLQQIFINLMNNAIVYTPA 478

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           GG + +           ++V DTG+G++  E+ +  + F ++  ++     GTGLGL + 
Sbjct: 479 GGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIV 537

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           K +V+A+ G   + S   +GT   ++ P
Sbjct: 538 KHLVEAHHGTITVDSEVGEGTTFTVVLP 565


>gi|229186843|ref|ZP_04313998.1| hypothetical protein bcere0004_43840 [Bacillus cereus BGSC 6E1]
 gi|228596580|gb|EEK54245.1| hypothetical protein bcere0004_43840 [Bacillus cereus BGSC 6E1]
          Length = 567

 Score =  365 bits (938), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 91/388 (23%), Positives = 179/388 (46%), Gaps = 26/388 (6%)

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           +           +   + +  +E E    +L +++E    G+ +I+  G I   NR+  +
Sbjct: 196 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 255

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542
            F    E+ L + +           +   + EI   +++   + +  LG  ++   +   
Sbjct: 256 TFHVTDEEYLDRLYYESFHHT---EIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 312

Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
            II          L  HDI+E K+ +                + DFLA VSHE++TP+T+
Sbjct: 313 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 358

Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           I GFSE + +   G + N ++ E + + I +    +  ++ DLLD+SKIE     L    
Sbjct: 359 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLSMGT 415

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           V +   + +   ++   A EK I ++ +    +  ++ D   ++QI +N+++NAI +TP+
Sbjct: 416 VDMKGLLEDIHMVLDNKAGEKEISLQVNTLKRV-SVIGDPSRLQQIFINLMNNAIVYTPA 474

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           GG + +           ++V DTG+G++  E+ +  + F ++  ++     GTGLGL + 
Sbjct: 475 GGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIV 533

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           K +V+A+ G   + S   +GT   ++ P
Sbjct: 534 KHLVEAHHGTITVDSEVGEGTTFTVVLP 561


>gi|228929635|ref|ZP_04092653.1| hypothetical protein bthur0010_43190 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|229124154|ref|ZP_04253346.1| hypothetical protein bcere0016_44390 [Bacillus cereus 95/8201]
 gi|228659456|gb|EEL15104.1| hypothetical protein bcere0016_44390 [Bacillus cereus 95/8201]
 gi|228830022|gb|EEM75641.1| hypothetical protein bthur0010_43190 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
          Length = 567

 Score =  365 bits (938), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 91/388 (23%), Positives = 179/388 (46%), Gaps = 26/388 (6%)

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           +           +   + +  +E E    +L +++E    G+ +I+  G I   NR+  +
Sbjct: 196 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 255

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542
            F    E+ L + +           +   + EI   +++   + +  LG  ++   +   
Sbjct: 256 TFHVTDEEYLDRLYYESFHHT---EIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 312

Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
            II          L  HDI+E K+ +                + DFLA VSHE++TP+T+
Sbjct: 313 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 358

Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           I GFSE + +   G + N ++ E + + I +    +  ++ DLLD+SKIE     L    
Sbjct: 359 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLSMGT 415

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           V +   + +   ++   A EK I ++ +    +  ++ D   ++QI +N+++NAI +TP+
Sbjct: 416 VDMKGLLEDIHMVLDNKAGEKEISLQVNTLKRV-SVIGDPSRLQQIFINLMNNAIVYTPA 474

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           GG + +           ++V DTG+G++  E+ +  + F ++  ++     GTGLGL + 
Sbjct: 475 GGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIV 533

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           K +V+A+ G   + S   +GT   ++ P
Sbjct: 534 KHLVEAHHGTITVDSEVGEGTTFTVVLP 561


>gi|196040901|ref|ZP_03108199.1| sensory box histidine kinase PhoR [Bacillus cereus NVH0597-99]
 gi|196028355|gb|EDX66964.1| sensory box histidine kinase PhoR [Bacillus cereus NVH0597-99]
          Length = 587

 Score =  365 bits (938), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 91/388 (23%), Positives = 179/388 (46%), Gaps = 26/388 (6%)

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           +           +   + +  +E E    +L +++E    G+ +I+  G I   NR+  +
Sbjct: 216 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 275

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542
            F    E+ L + +           +   + EI   +++   + +  LG  ++   +   
Sbjct: 276 TFHVTDEEYLDRLYYESFHHT---EIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 332

Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
            II          L  HDI+E K+ +                + DFLA VSHE++TP+T+
Sbjct: 333 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 378

Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           I GFSE + +   G + N ++ E + + I +    +  ++ DLLD+SKIE     L    
Sbjct: 379 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLSMGT 435

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           V +   + +   ++   A EK I ++ +    +  ++ D   ++QI +N+++NAI +TP+
Sbjct: 436 VDMKGLLEDIHMVLDNKAGEKEISLQVNTLKRV-SVIGDPSRLQQIFINLMNNAIVYTPA 494

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           GG + +           ++V DTG+G++  E+ +  + F ++  ++     GTGLGL + 
Sbjct: 495 GGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIV 553

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           K +V+A+ G   + S   +GT   ++ P
Sbjct: 554 KHLVEAHHGTITVDSEVGEGTTFTVVLP 581


>gi|118479735|ref|YP_896886.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           thuringiensis str. Al Hakam]
 gi|118418960|gb|ABK87379.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           thuringiensis str. Al Hakam]
          Length = 587

 Score =  365 bits (938), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 91/388 (23%), Positives = 179/388 (46%), Gaps = 26/388 (6%)

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           +           +   + +  +E E    +L +++E    G+ +I+  G I   NR+  +
Sbjct: 216 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 275

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542
            F    E+ L + +           +   + EI   +++   + +  LG  ++   +   
Sbjct: 276 TFHVTDEEYLDRLYYESFHHT---EIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 332

Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
            II          L  HDI+E K+ +                + DFLA VSHE++TP+T+
Sbjct: 333 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 378

Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           I GFSE + +   G + N ++ E + + I +    +  ++ DLLD+SKIE     L    
Sbjct: 379 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLSMGT 435

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           V +   + +   ++   A EK I ++ +    +  ++ D   ++QI +N+++NAI +TP+
Sbjct: 436 VDMKGLLEDIHMVLDNKAGEKEISLQVNTLKRV-SVIGDPSRLQQIFINLMNNAIVYTPA 494

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           GG + +           ++V DTG+G++  E+ +  + F ++  ++     GTGLGL + 
Sbjct: 495 GGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIV 553

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           K +V+A+ G   + S   +GT   ++ P
Sbjct: 554 KHLVEAHHGTITVDSEVGEGTTFTVVLP 581


>gi|49478694|ref|YP_038633.1| phosphate regulon sensor protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49330250|gb|AAT60896.1| phosphate regulon sensor protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 587

 Score =  365 bits (938), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 91/388 (23%), Positives = 179/388 (46%), Gaps = 26/388 (6%)

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           +           +   + +  +E E    +L +++E    G+ +I+  G I   NR+  +
Sbjct: 216 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 275

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542
            F    E+ L + +           +   + EI   +++   + +  LG  ++   +   
Sbjct: 276 TFHVTDEEYLDRLYYESFHHT---EIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 332

Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
            II          L  HDI+E K+ +                + DFLA VSHE++TP+T+
Sbjct: 333 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 378

Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           I GFSE + +   G + N ++ E + + I +    +  ++ DLLD+SKIE     L    
Sbjct: 379 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLSMGT 435

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           V +   + +   ++   A EK I ++ +    +  ++ D   ++QI +N+++NAI +TP+
Sbjct: 436 VDMKGLLEDIHMVLDNKAGEKEISLQVNTLKRV-SVIGDPSRLQQIFINLMNNAIVYTPA 494

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           GG + +           ++V DTG+G++  E+ +  + F ++  ++     GTGLGL + 
Sbjct: 495 GGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIV 553

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           K +V+A+ G   + S   +GT   ++ P
Sbjct: 554 KHLVEAHHGTITVDSEVGEGTTFTVVLP 581


>gi|49187478|ref|YP_030730.1| sensory box histidine kinase PhoR [Bacillus anthracis str. Sterne]
 gi|49181405|gb|AAT56781.1| sensory box histidine kinase PhoR [Bacillus anthracis str. Sterne]
          Length = 587

 Score =  365 bits (938), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 91/388 (23%), Positives = 179/388 (46%), Gaps = 26/388 (6%)

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           +           +   + +  +E E    +L +++E    G+ +I+  G I   NR+  +
Sbjct: 216 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 275

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542
            F    E+ L + +           +   + EI   +++   + +  LG  ++   +   
Sbjct: 276 TFHVTDEEYLDRLYYESFHHT---EIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 332

Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
            II          L  HDI+E K+ +                + DFLA VSHE++TP+T+
Sbjct: 333 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 378

Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           I GFSE + +   G + N ++ E + + I +    +  ++ DLLD+SKIE     L    
Sbjct: 379 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLSMGT 435

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           V +   + +   ++   A EK I ++ +    +  ++ D   ++QI +N+++NAI +TP+
Sbjct: 436 VDMKGLLEDIHMVLDNKAGEKEISLQVNTLKRV-SVIGDPSRLQQIFINLMNNAIVYTPA 494

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           GG + +           ++V DTG+G++  E+ +  + F ++  ++     GTGLGL + 
Sbjct: 495 GGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIV 553

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           K +V+A+ G   + S   +GT   ++ P
Sbjct: 554 KHLVEAHHGTITVDSEVGEGTTFTVVLP 581


>gi|30264658|ref|NP_847035.1| sensory box histidine kinase PhoR [Bacillus anthracis str. Ames]
 gi|47530128|ref|YP_021477.1| sensory box histidine kinase PhoR [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|65321955|ref|ZP_00394914.1| COG0642: Signal transduction histidine kinase [Bacillus anthracis
           str. A2012]
 gi|165869708|ref|ZP_02214366.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0488]
 gi|167633978|ref|ZP_02392301.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0442]
 gi|167638013|ref|ZP_02396291.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0193]
 gi|170685740|ref|ZP_02876963.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0465]
 gi|170705359|ref|ZP_02895823.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0389]
 gi|177651147|ref|ZP_02933978.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0174]
 gi|190569089|ref|ZP_03021989.1| sensory box histidine kinase PhoR [Bacillus anthracis
           Tsiankovskii-I]
 gi|196032783|ref|ZP_03100196.1| sensory box histidine kinase PhoR [Bacillus cereus W]
 gi|218905815|ref|YP_002453649.1| sensory box histidine kinase PhoR [Bacillus cereus AH820]
 gi|227817372|ref|YP_002817381.1| sensory box histidine kinase PhoR [Bacillus anthracis str. CDC 684]
 gi|229600397|ref|YP_002868867.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0248]
 gi|254687395|ref|ZP_05151251.1| sensory box histidine kinase PhoR [Bacillus anthracis str.
           CNEVA-9066]
 gi|254724958|ref|ZP_05186741.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A1055]
 gi|254736695|ref|ZP_05194401.1| sensory box histidine kinase PhoR [Bacillus anthracis str. Western
           North America USA6153]
 gi|254741732|ref|ZP_05199419.1| sensory box histidine kinase PhoR [Bacillus anthracis str. Kruger
           B]
 gi|254754670|ref|ZP_05206705.1| sensory box histidine kinase PhoR [Bacillus anthracis str. Vollum]
 gi|254757502|ref|ZP_05209529.1| sensory box histidine kinase PhoR [Bacillus anthracis str.
           Australia 94]
 gi|301056093|ref|YP_003794304.1| phosphate regulon sensor protein [Bacillus anthracis CI]
 gi|30259333|gb|AAP28521.1| sensory box histidine kinase PhoR [Bacillus anthracis str. Ames]
 gi|47505276|gb|AAT33952.1| sensory box histidine kinase PhoR [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|164714537|gb|EDR20056.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0488]
 gi|167513830|gb|EDR89198.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0193]
 gi|167530779|gb|EDR93481.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0442]
 gi|170129484|gb|EDS98347.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0389]
 gi|170670204|gb|EDT20944.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0465]
 gi|172082973|gb|EDT68035.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0174]
 gi|190559871|gb|EDV13856.1| sensory box histidine kinase PhoR [Bacillus anthracis
           Tsiankovskii-I]
 gi|195994212|gb|EDX58167.1| sensory box histidine kinase PhoR [Bacillus cereus W]
 gi|218540120|gb|ACK92518.1| sensory box histidine kinase PhoR [Bacillus cereus AH820]
 gi|227004296|gb|ACP14039.1| sensory box histidine kinase PhoR [Bacillus anthracis str. CDC 684]
 gi|229264805|gb|ACQ46442.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0248]
 gi|300378262|gb|ADK07166.1| phosphate regulon sensor protein [Bacillus cereus biovar anthracis
           str. CI]
          Length = 587

 Score =  365 bits (938), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 91/388 (23%), Positives = 179/388 (46%), Gaps = 26/388 (6%)

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           +           +   + +  +E E    +L +++E    G+ +I+  G I   NR+  +
Sbjct: 216 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 275

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542
            F    E+ L + +           +   + EI   +++   + +  LG  ++   +   
Sbjct: 276 TFHVTDEEYLDRLYYESFHHT---EIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 332

Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
            II          L  HDI+E K+ +                + DFLA VSHE++TP+T+
Sbjct: 333 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 378

Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           I GFSE + +   G + N ++ E + + I +    +  ++ DLLD+SKIE     L    
Sbjct: 379 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLSMGT 435

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           V +   + +   ++   A EK I ++ +    +  ++ D   ++QI +N+++NAI +TP+
Sbjct: 436 VDMKGLLEDIHMVLDNKAGEKEISLQVNTLKRV-SVIGDPSRLQQIFINLMNNAIVYTPA 494

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           GG + +           ++V DTG+G++  E+ +  + F ++  ++     GTGLGL + 
Sbjct: 495 GGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIV 553

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           K +V+A+ G   + S   +GT   ++ P
Sbjct: 554 KHLVEAHHGTITVDSEVGEGTTFTVVLP 581


>gi|288959456|ref|YP_003449797.1| two-component sensor histidine kinase [Azospirillum sp. B510]
 gi|288911764|dbj|BAI73253.1| two-component sensor histidine kinase [Azospirillum sp. B510]
          Length = 680

 Score =  365 bits (938), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 132/671 (19%), Positives = 250/671 (37%), Gaps = 24/671 (3%)

Query: 159 VPIDLAALPIYSRNREF-SGFRGFG---IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214
             +   A    +R+R    G R      I+            G  L    +         
Sbjct: 13  FWLVAYADLERTRDRAIQDGLRQTANLSILLEEDARRAMVVAGYTLRAVAAEGTIPAYLL 72

Query: 215 SSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQED 274
                         +    L +  +   + +     +     +          S      
Sbjct: 73  GETAGVPGAAAGPGAAMRSLLIVERDGRVRQSAGLDEVARIADGPLAEAVHGESAAFIGP 132

Query: 275 FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF 334
           +   +     +      L N S  +   +       L A  + G  L+     +      
Sbjct: 133 YRQADGG--WRAAVVRPLTNGSAMAVAVIDLDRFTRLYATQNIGP-LSIILFYREDGTVL 189

Query: 335 VYSHGN--LFYANPSFLL--LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390
            +S G+      N +F    L +  + +      G                +   + R  
Sbjct: 190 AHSRGSMPFLDENRAFFASVLPRLPAGEVTRTLSGFD--------PTEGRERIGTVRRVA 241

Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT-RINKRKMEI 449
              +    R+ T                E A           +    +       + +  
Sbjct: 242 GWPLYVYVRIRTDDVLAGWYNDRLKRILETAAVSVVVTLLALLALRQLGRLETTTQALRA 301

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
              +  ++ +++   + +++ +G +L  NR    L G P + ++               +
Sbjct: 302 SERRSQALFDSSFQVMGLLSPDGQVLGLNRPACALAGLPADALVGNRAWEIRGWARTDEL 361

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM----HDISEWK 565
                  +         +       +     + + IK +         +     DI+E  
Sbjct: 362 ATAFRHSIEKAASGRFVRYETDVVTDGATRVMDVTIKPVFDEKGTVTVLVVEARDITERV 421

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           +   +L+ A   AE  +  KS FLA +SHE+RTPL AIIGFS+++ ++ FGPLG+PRY +
Sbjct: 422 EAAERLAAALDQAEAANRAKSAFLATMSHELRTPLNAIIGFSDIMLHELFGPLGSPRYRD 481

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           Y  ++  SG  +LD++ND+LD+SK+E+G+  L    +   +A+    +L  + A+   + 
Sbjct: 482 YVRHVQNSGRHLLDLINDVLDMSKLEAGRYTLDESWLEPADAIETCRALAAIPADAGGVT 541

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +       +P++LAD R+++Q+ LN+LSNA+ FTP GG++ +S     +  + + VRDTG
Sbjct: 542 LEVDCPPCLPKLLADERALRQVLLNLLSNAVKFTPRGGRVTVSALREEDGGIAITVRDTG 601

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+    L + ++PF Q  +S   R  GTGLGL + + ++  + G   + S P  GT   
Sbjct: 602 IGIPADALARILEPFQQADSSIPARFGGTGLGLSICRDLMALHGGGLSLDSEPGCGTAAT 661

Query: 806 IIFPLYDTSHP 816
           I FP+   + P
Sbjct: 662 IRFPVCRVAPP 672



 Score = 42.3 bits (98), Expect = 0.33,   Method: Composition-based stats.
 Identities = 24/269 (8%), Positives = 60/269 (22%), Gaps = 21/269 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147
           +   G +  ++       G  A  ++G R  ++      D         +++  +     
Sbjct: 320 LSPDGQVLGLNRPACALAGLPADALVGNRAWEIRGWARTDELATAFRHSIEKAASGRFVR 379

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
               +        +D+   P++      +               +          +    
Sbjct: 380 YETDVVTDGATRVMDVTIKPVFDEKGTVT--VLVVEARDITERVEAAERLAAALDQAEAA 437

Query: 208 HEIKKGHSSVEKEKYDIFSQQ-------------SPPPHLRMKNKVSSLTEYYAHKDDVL 254
           +  K    +    +                     P    R ++ V  +     H  D L
Sbjct: 438 NRAKSAFLATMSHELRTPLNAIIGFSDIMLHELFGPLGSPRYRDYVRHVQNSGRHLLD-L 496

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
             +   +   E       E +        T +       +    + E       P L   
Sbjct: 497 INDVLDMSKLEAGRYTLDESWLEPADAIETCRALAAIPADAGGVTLEVDCP---PCLPKL 553

Query: 315 FDEGENLTPETVDKCPIPF-FVYSHGNLF 342
             +   L    ++       F    G + 
Sbjct: 554 LADERALRQVLLNLLSNAVKFTPRGGRVT 582


>gi|167647393|ref|YP_001685056.1| PAS/PAC sensor signal transduction histidine kinase [Caulobacter
           sp. K31]
 gi|167349823|gb|ABZ72558.1| PAS/PAC sensor signal transduction histidine kinase [Caulobacter
           sp. K31]
          Length = 844

 Score =  365 bits (938), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 163/751 (21%), Positives = 287/751 (38%), Gaps = 65/751 (8%)

Query: 100 EELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYV 159
           E   +  G  A  +  +   DV  +   DP        +   T  G++  W   GT   +
Sbjct: 111 ETALRAAGGEAMAVAVLGPADVLAVAGRDPAADWKAAARAAGT-SGRSL-WIGGGTTGRL 168

Query: 160 PIDLAALPIYSRNREFSGFRGFGIVH-VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVE 218
            + + A PI        G RGF I            A G       ++   +      + 
Sbjct: 169 YVVM-ATPI-------EGGRGFVIASSDPSRLVAEPAKGAASALMLANGKILAAAGRPI- 219

Query: 219 KEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTI 278
            E      +        + +  ++L          L     PL   +  +    +     
Sbjct: 220 -EGATTLREAFSLSIEDLGDGPAALRGQSV-DGRALDVAAQPLAQGDLLAAAAAQPRTVA 277

Query: 279 NLNQYTKKQYFGTLQ----NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF 334
           N+++   +     L       +      L  R        F + E      V+      +
Sbjct: 278 NVDRQIMEGAVSLLAPLAVGIALALMLMLQSRRVEMAQREFVDSEQRFRLAVEAARCGIW 337

Query: 335 VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394
            +  G    A+  F+                    L      D+       L  +  T  
Sbjct: 338 EWELG----ADQVFMSDVTGAMFGWGGGGVVAGQELLDRVSVDHRDKVRQALANAA-TYG 392

Query: 395 AASARLHTIQWNRENSLAMTFIPFE-KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
           A          +   ++ +                   G+  +  + R+ + + +    +
Sbjct: 393 AFDVSFRVPSRDGGRAIWIDARGQGFGKPGEDGYSRIIGVALDVTEERLAQARAQAAENR 452

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
           L   +E+ S+   + +R+G +L  NR    +F    + +  KP     E N  + +    
Sbjct: 453 LRDAIESVSEAFVLWDRQGRLLMCNRNYRNVFNLEPKLL--KPGAPRNEVNRFAALAIKH 510

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH 573
            +      +   E        + + + +    ++        +T  DI+  K ++     
Sbjct: 511 DQPAPDGAKGVREAEL----NDGRWIQIS---ERRTAEGGLVMTAADITAIKNQEEARRL 563

Query: 574 AKKIAEKE----------------------------SSHKSDFLARVSHEIRTPLTAIIG 605
            ++  +                              +  KS+FLA +SHE+RTPL AI G
Sbjct: 564 NEEQLQHAVAGLERSQEQLAELARKYEMEKVKAEGANKAKSEFLANMSHELRTPLNAING 623

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
           FSE++ N+ FGPLG+ RY  Y+  I  SG  +L ++ND+LD+SKIE+GKMNL FEP+SL+
Sbjct: 624 FSEIMMNEMFGPLGDQRYKGYSLDIHNSGQHLLALINDILDMSKIEAGKMNLKFEPLSLE 683

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725
           +   +A+ LV+  A    + +   F   +P + AD R+VKQ+ LN+LSNAI FTP  G+I
Sbjct: 684 DVTEDAVRLVRNRAEAAGLKLEIDFPP-LPEVEADYRAVKQVLLNLLSNAIKFTPRAGRI 742

Query: 726 IISTTHTSN---EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
           ++      +   E V + V DTG+G+   +L +  +PF Q+ +      +GTGLGL L K
Sbjct: 743 VVRAEVRRDPLGERVRVSVTDTGIGIAAEDLARLARPFEQVESQHAKTTQGTGLGLALTK 802

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
           ++V+ + G   + STP +GT +  I P+  +
Sbjct: 803 SLVEMHDGALEMTSTPGEGTTVSFILPISQS 833



 Score = 39.2 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 41/423 (9%), Positives = 94/423 (22%), Gaps = 18/423 (4%)

Query: 178 FRGFGIVHVNRVDNDPR--ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR 235
           +  FGI  + +  N P   A      K  +   E                 Q+ P   + 
Sbjct: 49  YTAFGISRLKQEANVPPGGASLAAEAKLVAAAAETNLAAQRAGLSAAADLLQRDPSAPID 108

Query: 236 MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN 295
                       A    VL       +   + +   +        +  +     G     
Sbjct: 109 AAETALRAAGGEAMAVAVLGPADVLAVAGRDPAADWKAAARAAGTSGRSL-WIGGGTTGR 167

Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYK 355
                          + A  D    +                +G +  A  +   +    
Sbjct: 168 LYVVMATPIEGGRGFVIASSDPSRLVAEPAKGAASALMLA--NGKILAA--AGRPIEGAT 223

Query: 356 SVDD-----IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
           ++ +     IE  G     L    +                   AA+A+  T+       
Sbjct: 224 TLREAFSLSIEDLGDGPAALRGQSVDGRALDVAAQPLAQGDLLAAAAAQPRTVANVDRQI 283

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470
           +                     ++   V+  + +R+      +    +EA   GI     
Sbjct: 284 MEGAVSLLAPLAVGIALALMLMLQSRRVE--MAQREFVDSEQRFRLAVEAARCGIWEWEL 341

Query: 471 EGIILSTNRAVSKLF-GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
               +  +     +F       +  +     +  +    +   L    +        ++ 
Sbjct: 342 GADQVFMSDVTGAMFGWGGGGVVAGQELLDRVSVDHRDKVRQALANAATYGAFDVSFRVP 401

Query: 530 LGSTKEEKLLSLRIIIKKLPFSSCY---SLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
                    +  R      P    Y        D++E +  + +   A+          S
Sbjct: 402 SRDGGRAIWIDARGQGFGKPGEDGYSRIIGVALDVTEERLAQARAQAAENRLRDAIESVS 461

Query: 587 DFL 589
           +  
Sbjct: 462 EAF 464


>gi|147678165|ref|YP_001212380.1| signal transduction histidine kinase [Pelotomaculum
           thermopropionicum SI]
 gi|146274262|dbj|BAF60011.1| signal transduction histidine kinase [Pelotomaculum
           thermopropionicum SI]
          Length = 467

 Score =  365 bits (938), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 89/372 (23%), Positives = 176/372 (47%), Gaps = 24/372 (6%)

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
            E  ++ +IL + SDG+  ++  G ++  N  V +LF   +     K     +       
Sbjct: 116 AEKNRIKAILSSMSDGVIAMDAWGRMILINPVVEELFRITMAASRGKNILRVIRNYD--- 172

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQ 566
           +   L + L     + ++K       E ++  + +I  +   +        + DI+E K 
Sbjct: 173 LEKLLNQALETG--RCMQKQIQILAPEPRVFQVHVIPLQNSGAERGGVVALLRDITERKI 230

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
            +                +S+F+A VSHE+RTPLT+I GF+E + +         R   +
Sbjct: 231 LQE--------------MRSEFVANVSHELRTPLTSIRGFAETLLDGALEEPDTAR--RF 274

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
              I+     +  ++++LL++S++ES K     +PV++ E +  A++++Q  A EK + I
Sbjct: 275 LEIINSETERLSRLIDELLNLSRLESHKWVPKRQPVNMGELIKRAVAILQPRAVEKNLAI 334

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
           + +   ++P +  D   + Q+ LN++ NA+ +T +GG++ IS   T +E   + V+D G+
Sbjct: 335 KINLPEDLPVVQGDPDMLSQVLLNLIENAVVYTQAGGEVSISAAATQDEM-KVDVKDNGI 393

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+    L +  + F ++  ++     GTGLGL + K ++DA+ G   + S    G+    
Sbjct: 394 GIPPESLSRVFERFYRVDKARSREQGGTGLGLSIVKHIIDAHRGSVQVESKVGIGSTFSF 453

Query: 807 IFPLYDTSHPHD 818
           + PL   +   D
Sbjct: 454 VIPLEHQAASED 465



 Score = 37.7 bits (86), Expect = 8.6,   Method: Composition-based stats.
 Identities = 22/166 (13%), Positives = 47/166 (28%), Gaps = 8/166 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +DA G +  I+  + +          G  +  V     ++    +   L+       +  
Sbjct: 135 MDAWGRMILINPVVEELFRITMAASRGKNILRVIRNYDLEK--LLNQALETGRCMQKQIQ 192

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           +   E     V +    +P+ +   E  G     ++         + +        SH  
Sbjct: 193 ILAPEPRVFQVHV----IPLQNSGAERGGV--VALLRDITERKILQEMRSEFVANVSHEL 246

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254
                      E     + + P    R    ++S TE  +   D L
Sbjct: 247 RTPLTSIRGFAETLLDGALEEPDTARRFLEIINSETERLSRLIDEL 292


>gi|170728644|ref|YP_001762670.1| PAS/PAC sensor-containing hybrid histidine kinase [Shewanella
           woodyi ATCC 51908]
 gi|169813991|gb|ACA88575.1| PAS/PAC sensor hybrid histidine kinase [Shewanella woodyi ATCC
           51908]
          Length = 1245

 Score =  365 bits (937), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 123/573 (21%), Positives = 213/573 (37%), Gaps = 41/573 (7%)

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP--SLSAY 314
            + P    E  ++  +  F  ++      +QY   L   ++   + ++ R       +  
Sbjct: 405 SQEPRKPPERMTIGWEPWFQLVSRIFEENQQYTRHLAEQNRRLDKLVARRTERLKETTER 464

Query: 315 FDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
            +    L    +D  P    F    G     N S   +  Y   + I       T     
Sbjct: 465 REREYALLRSLLDSIPEAIVFKDKEGKYLGCNKSAERMLGYTESEMIGQESIKLT----- 519

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN--RENSLAMTFIPFEKANQFPENMPQN 431
                +  + V +   D   ++    L   +        + +  +     N+  E +   
Sbjct: 520 -----SEEQSVRIKAEDGRVLSERTPLRYQEKVELAGKPVLLDTLKLPFYNRRGELLGLI 574

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA--IINREGIILSTNRAVSKLFGYPV 489
            +  +      +  ++ +   +    ++A  DG+    ++ E II   N A   + GY  
Sbjct: 575 AVWRDVTREYESAEQLRLSEERYHLAMDAVEDGLWDWYLDSEQII--CNPAYYSMLGYKT 632

Query: 490 ED--ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR----- 542
            +   L       +  +    +  Y  E LS  +    +       K  +   L      
Sbjct: 633 NEFPALVSTIDALIHPDDRIRVEEYRDEYLSDPI-GAFDIEFRMKGKSGEYHWLLSRGRV 691

Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
           +             T  DI+  K  +  +  AK+ AE  + +KS+FLA +SHEIRTP+ A
Sbjct: 692 VEFTTDNQPKRMVGTHKDITRHKSNEVVMLEAKQDAESANLYKSEFLANMSHEIRTPMNA 751

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           IIG  ++ +     P    +  +Y +    S   +L I+ND+LD SKIE+GK+ L     
Sbjct: 752 IIGMLQLAQRTSLTP----QQEDYLDKAGFSAQSLLRIINDILDFSKIEAGKLELERVSF 807

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPS 721
            LD+ +  A+ L  L A EK + +          IL  D   + Q+ +N+LSNA+ FT S
Sbjct: 808 PLDKVLDHALDLNALKAQEKGVELLLYAPVTAGLILEGDPLRLGQVLINMLSNAVKFTQS 867

Query: 722 GGQIIISTTHTSNEE------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           G    I        E      +   VRDTG+G++  + E     F Q   S   +  GTG
Sbjct: 868 G---EIELGCEDVGERDHRITLKFWVRDTGIGISKEQQESLFDAFAQADGSTTRKYGGTG 924

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           LGL ++K +V    G   + S    G+      
Sbjct: 925 LGLSISKHLVSMMGGTMQVQSEMGVGSTFSFTI 957



 Score = 47.3 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 66/223 (29%), Gaps = 14/223 (6%)

Query: 79  IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGM-RLCDVSDILHIDPNNHIGDLL 137
                   +  D  G     ++   + +G    +MIG   +   S+   +      G +L
Sbjct: 477 DSIPEAIVFK-DKEGKYLGCNKSAERMLGYTESEMIGQESIKLTSEEQSVRIKAEDGRVL 535

Query: 138 KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN-RVDNDPRAL 196
             +     +     +E     V +D   LP Y+R  E  G     +     R       L
Sbjct: 536 SERTPLRYQE---KVELAGKPVLLDTLKLPFYNRRGELLGL--IAVWRDVTREYESAEQL 590

Query: 197 GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK----NKVSSLTEYYAHKDD 252
               ++    +  ++ G      +   I    +    L  K      + S  +   H DD
Sbjct: 591 RLSEERYHLAMDAVEDGLWDWYLDSEQIICNPAYYSMLGYKTNEFPALVSTIDALIHPDD 650

Query: 253 VLKTEKYPL--LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293
            ++ E+Y    L+    +   +      +   +        ++
Sbjct: 651 RIRVEEYRDEYLSDPIGAFDIEFRMKGKSGEYHWLLSRGRVVE 693


>gi|332994427|gb|AEF04482.1| PAS signal transduction protein [Alteromonas sp. SN2]
          Length = 1107

 Score =  365 bits (937), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 108/637 (16%), Positives = 235/637 (36%), Gaps = 30/637 (4%)

Query: 194 RALGKRLDKKF--SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD 251
                 LD     + L +              + S  +      ++ +  + +  YA ++
Sbjct: 19  EEGELWLDDILNKTSLLDNHDASRLTTGLSALLASIDNTYRQHGLEAEGKTTSGGYARQN 78

Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
           ++ +       TS +      ++         T +       + +  +       +  + 
Sbjct: 79  NMDRPPVAQGQTSPQELAAITDNLVQSVNTLLTAQARPEIDDDIASLTSLSTLVLDLITE 138

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
             + +    +    +D+  I   +  +G +  AN     L+++   + I     +  + +
Sbjct: 139 QQHKENDMLIQRRAMDEHSIVVTLDLNGTILSANDKCCQLSEFTRGELIGNNADMLNVKN 198

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
            P  +    ++ +               L ++  +      +        N+        
Sbjct: 199 VPLPTRLAILQSLF----KGEIWHGE--LQSVTKSGTPWF-VFCTIVPNVNEQGRVENLV 251

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
            +  +  + +  ++++E       SI  +  +G+  ++ +G     N   S+L G+ + D
Sbjct: 252 VLCTDISNQKRLEKRLETGRQFYQSITNSIGEGVYAVDAKGKTQFLNPEASRLLGWELAD 311

Query: 492 ILRKPFTVFLEQNTPSVMN-----HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
           +    F   +                +   +      + ++      K  ++  + I+  
Sbjct: 312 LQSHRFHNAVHYQKEDGTLLSRDECPVNHAICKGKTYSSDEDFFT-DKRGRIFPISIVAV 370

Query: 547 KLPF----SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
            L       + +     DIS  K  + +L HA K A   +  K DFLA +SHEIRTP+ A
Sbjct: 371 PLEDIHGEPNGHVGVFRDISGRKGLERQLQHAYKEAANANKAKGDFLATMSHEIRTPMNA 430

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           IIG + +            +   Y   +  S   +L ++N +LD SK+E+ ++ LH    
Sbjct: 431 IIGLTHLALETDNYT----QQQSYMTKVKGSATSLLTLINGILDFSKVEAQQIELHHADF 486

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTS--FANNIPRILADLRSVKQIALNILSNAIHFTP 720
           +L + +++   + Q  A +K + +        ++     D   + Q+ +N+L NAI FT 
Sbjct: 487 NLADMMNKLAQVFQHKARQKHLQLLFDMRLDTDV-TCNGDSDKIYQVLVNLLGNAIKFTR 545

Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
            G  + ++ +   +  +   V DTG+G+     EK    F Q   S      GTGLGL +
Sbjct: 546 HGF-VKLTVSKEKDA-LSFCVSDTGIGIDADNKEKLFNAFVQADASISREYGGTGLGLAI 603

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFP--LYDTSH 815
           +K +V+   G+    S   KGT      P  +++T++
Sbjct: 604 SKRLVELMHGELEFTSELGKGTQFCFAVPELVHETAN 640



 Score = 45.8 bits (107), Expect = 0.032,   Method: Composition-based stats.
 Identities = 19/245 (7%), Positives = 61/245 (24%), Gaps = 15/245 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN-HIGDLLKRQNTWYGKT 147
           +D +G +   +++  +       ++IG     ++      P    I   L +   W+G+ 
Sbjct: 162 LDLNGTILSANDKCCQLSEFTRGELIGNNADMLNVKNVPLPTRLAILQSLFKGEIWHGEL 221

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                 GT  +V   +  +P  +            +              +   + +  +
Sbjct: 222 QSVTKSGTPWFVFCTI--VPNVNEQGRVENL--VVLCTDISNQKRLEKRLETGRQFYQSI 277

Query: 208 ----------HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257
                      + K     +  E   +   +         +      +         +  
Sbjct: 278 TNSIGEGVYAVDAKGKTQFLNPEASRLLGWELADLQSHRFHNAVHYQKEDGTLLSRDECP 337

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
               +   ++   +++ F       +        L++   E   ++      S     + 
Sbjct: 338 VNHAICKGKTYSSDEDFFTDKRGRIFPISIVAVPLEDIHGEPNGHVGVFRDISGRKGLER 397

Query: 318 GENLT 322
                
Sbjct: 398 QLQHA 402



 Score = 44.6 bits (104), Expect = 0.072,   Method: Composition-based stats.
 Identities = 18/150 (12%), Positives = 46/150 (30%), Gaps = 11/150 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP------NNHIGDLLKR 139
            + +DA G  + ++ E  + +G     +   R  +       D          +   + +
Sbjct: 285 VYAVDAKGKTQFLNPEASRLLGWELADLQSHRFHNAVHYQKEDGTLLSRDECPVNHAICK 344

Query: 140 QNTW-YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
             T+   +       G     PI + A+P+   + E +G    G+              +
Sbjct: 345 GKTYSSDEDFFTDKRGRIF--PISIVAVPLEDIHGEPNGH--VGVFRDISGRKGLERQLQ 400

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228
              K+ ++ ++ K    +    +       
Sbjct: 401 HAYKEAANANKAKGDFLATMSHEIRTPMNA 430


>gi|302382006|ref|YP_003817829.1| PAS/PAC sensor signal transduction histidine kinase [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302192634|gb|ADL00206.1| PAS/PAC sensor signal transduction histidine kinase [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 792

 Score =  365 bits (937), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 145/739 (19%), Positives = 268/739 (36%), Gaps = 58/739 (7%)

Query: 103 PKTIGNYAFKMIGMRLC--DVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVP 160
            +         IG      DV             D ++       +T           + 
Sbjct: 67  AELAAARLDAAIGRAQLGLDVVAGRLAGAPERSLDAVEAGRAVAPETAFLVTAADGTRLA 126

Query: 161 IDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKE 220
              AA   +  +         GI+    V          L    + L     G       
Sbjct: 127 SKGAAAEDFVVDNR-------GILRQRAVGGQIVIARTALPASDNVLVVGPDGRVLGMTT 179

Query: 221 KYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINL 280
                    P   +  +  ++                +  L+                +L
Sbjct: 180 TLKARLGVEPRALVGTETPLAGRIADKRVTAAGAAVGETGLVAVAWRPQSTGAAALISDL 239

Query: 281 NQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN 340
                    G L         +         S  + E E+     V+      + +    
Sbjct: 240 WLIMAPIGLGVLVLGLALMQGW----RQSRASRVWAESEHRFRVAVEAARCGVWEWDLDR 295

Query: 341 -LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399
                +     L    +   +  A  +  +    +    +A++    + +     A    
Sbjct: 296 ETVDVSDYMAALLGLPTGGSVTSAAVIERIHPRYRDLVEHALRQAATFGAFEVTFAVPLE 355

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459
               +W      A                   G+  +  + R  + +++    +L   +E
Sbjct: 356 GGGARWIDARGQA------RGRRGDDGYGMILGVAMDITEARRARAQLQAAEGRLRDGIE 409

Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL 519
           + SD   + ++ G ++  N+A    FG+  E +  +      E N  + +          
Sbjct: 410 SVSDAFVLFDKHGRLILWNQAFKDAFGFADEAV--RKGAQKDELNRIAALAIKADRPSPE 467

Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA----- 574
                 E        + ++L L    ++        +T  D++  ++++ +   +     
Sbjct: 468 GRAGAREVELY----DGRVLQL---AERFTGDGGTVITAADVTAIRRQEVERQRSADSLR 520

Query: 575 -----------------------KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
                                     AE  +  KS+FLA +SHE+RTPL AI GFSE++ 
Sbjct: 521 KTVDELEASQEKLSLLARKYEIAMTRAEAANQAKSEFLANMSHELRTPLNAINGFSEIMA 580

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
            + FGPLG+ +Y  YA+ I +SG  +L ++ND+LD++KIE+GKM LH+E VSL E   +A
Sbjct: 581 GEMFGPLGHEKYKGYAHDILKSGQHLLSLINDILDMAKIEAGKMTLHYEAVSLTELCEDA 640

Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
           I L++  A +  + +    A ++P I AD R +KQ+ LN++SNA+ FTP GG+I +S T 
Sbjct: 641 IRLMRGKAQDCGLTLSLE-AGDVPEIEADYRGLKQVMLNLISNAVKFTPEGGEITVSVTR 699

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
            +   + + V DTG+G+   +L +  +PF Q+        +GTGLGL L K++++ + G+
Sbjct: 700 QNAVTMRIAVTDTGIGIAAADLARLAQPFEQVEGQHSKTTQGTGLGLALTKSLIELHGGE 759

Query: 792 FYIFSTPAKGTLIEIIFPL 810
             + S P +GT +    P+
Sbjct: 760 MTMVSEPGEGTTVSFDIPI 778



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/379 (7%), Positives = 83/379 (21%), Gaps = 29/379 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +   G +  ++  L   +G     ++G      + +     +  +               
Sbjct: 168 VGPDGRVLGMTTTLKARLGVEPRALVGTE----TPLAGRIADKRVTAAGAAVGETGLVAV 223

Query: 149 LWPIEGTNLY-----VPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
            W  + T        + + +A + +       +  +G+     +RV  +     +   + 
Sbjct: 224 AWRPQSTGAAALISDLWLIMAPIGLGVLVLGLALMQGWRQSRASRVWAESEHRFRVAVEA 283

Query: 204 FSHLH---EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
                   ++ +    V      +     P         V                 +  
Sbjct: 284 ARCGVWEWDLDRETVDVSDYMAALLGL--PTGGSVTSAAVIERIHPRYRDLVEHALRQAA 341

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK-ESFEYLSHRNHPSLSAYFDEGE 319
              + E +     +           +       +         +         A     E
Sbjct: 342 TFGAFEVTFAVPLEGGGARWIDARGQARGRRGDDGYGMILGVAMDITEARRARAQLQAAE 401

Query: 320 NLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
               + ++     F ++   G L   N +F     +                       +
Sbjct: 402 GRLRDGIESVSDAFVLFDKHGRLILWNQAFKDAFGFADEA------------VRKGAQKD 449

Query: 379 NAIKPVMLYRSDRTCIA-ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
              +   L            A    ++      L +                   I  ++
Sbjct: 450 ELNRIAALAIKADRPSPEGRAGAREVELYDGRVLQLAERFTGDGGTVITAADVTAIRRQE 509

Query: 438 VDTRINKRKMEIEVMQLCS 456
           V+ + +   +   V +L +
Sbjct: 510 VERQRSADSLRKTVDELEA 528



 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/265 (9%), Positives = 64/265 (24%), Gaps = 7/265 (2%)

Query: 70  SENTFVFDPIPRTVRF-TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID 128
           +E+   F       R   W  D      ++S+ +   +G      +      V + +H  
Sbjct: 271 AESEHRFRVAVEAARCGVWEWDLDRETVDVSDYMAALLGLPTGGSV--TSAAVIERIHPR 328

Query: 129 PNNHIGDLLKRQNTWY--GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHV 186
             + +   L++  T+     T   P+EG      ID        R  +  G    G+   
Sbjct: 329 YRDLVEHALRQAATFGAFEVTFAVPLEGGGAR-WIDARGQARGRRGDDGYGMI-LGVAMD 386

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY 246
                  RA  +  + +     E       +  +   +                +     
Sbjct: 387 ITEARRARAQLQAAEGRLRDGIESVSDAFVLFDKHGRLILWNQAFKDAFGFADEAVRKGA 446

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
              + + +                   +    +       + F         + +  + R
Sbjct: 447 QKDELNRIAALAIKADRPSPEGRAGAREVELYDGRVLQLAERFTGDGGTVITAADVTAIR 506

Query: 307 NHPSLSAYFDEGENLTPETVDKCPI 331
                     +    T + ++    
Sbjct: 507 RQEVERQRSADSLRKTVDELEASQE 531


>gi|283778609|ref|YP_003369364.1| multi-sensor hybrid histidine kinase [Pirellula staleyi DSM 6068]
 gi|283437062|gb|ADB15504.1| multi-sensor hybrid histidine kinase [Pirellula staleyi DSM 6068]
          Length = 1314

 Score =  365 bits (937), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 92/429 (21%), Positives = 166/429 (38%), Gaps = 15/429 (3%)

Query: 392 TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG--IEPEDVDTRINKRKMEI 449
             I     +   +   + S  +   P  +  Q      +    +  E +           
Sbjct: 402 ELIDLLVNMDRQRQRGDFSQPVHVEPHTEVGQIAAEYNRVIDCVNQEIIAREQAIAAART 461

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
              +  SI E   +GI      G  LS N  +++++G+     ++        Q      
Sbjct: 462 AEEKFRSIFENAVEGIFQTTPSGEYLSANPKLARIYGFETVADMQTGLQDISRQLYVDPA 521

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS----LTMHDISEWK 565
                  L       +   +     +  ++ +    + +            T+ +I++ K
Sbjct: 522 RRAEFCSLLEQTDVVIGFESQVYRADGSIIWISENARAIRDEQGQVKYYEGTVEEITQRK 581

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
                L   K+ A   S  KS FLA +SHEIRTPL  +IG  E++         + R   
Sbjct: 582 -LNADLKAEKEAAVAASQAKSAFLANMSHEIRTPLNGVIGMLELLGTTTL----DERQNR 636

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           Y +    S   +L ++ND+LD SKIE+GK+ L      L   + +   +    ANEK + 
Sbjct: 637 YVHIARSSAGTLLGLINDVLDFSKIEAGKLELERVQFDLHSLLEDVAEMFSHRANEKGLE 696

Query: 686 IRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV---ILRV 741
           +       +P  +  D   ++Q+ +N+++NAI FT  G  I+ +     +  V    + V
Sbjct: 697 LSCRILPGVPTNVYGDPERIRQVLINLVNNAIKFTKQGEVILRAEQQVHSSGVSRMRISV 756

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            DTG+G+      +   PF Q+  S   +  GTGLGL + + +++   G+  + S    G
Sbjct: 757 IDTGIGIPADRSSQLFAPFTQVDASTTRKYGGTGLGLAICRQLIELMGGRVGVDSVEGNG 816

Query: 802 TLIEIIFPL 810
           +      PL
Sbjct: 817 STFWCEVPL 825



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 35/263 (13%), Positives = 76/263 (28%), Gaps = 24/263 (9%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNTW 143
            +     G     + +L +  G      +   L D+S  L++DP        LL++ +  
Sbjct: 477 IFQTTPSGEYLSANPKLARIYGFETVADMQTGLQDISRQLYVDPARRAEFCSLLEQTDVV 536

Query: 144 YG-KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
            G ++ ++  +G+   + I   A  I     +   + G                 ++L+ 
Sbjct: 537 IGFESQVYRADGSI--IWISENARAIRDEQGQVKYYEG----------TVEEITQRKLNA 584

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
                 E     S  +       S +   P   +   +  L      +            
Sbjct: 585 DLKAEKEAAVAASQAKSAFLANMSHEIRTPLNGVIGMLELLGTTTLDERQNRYVHIARSS 644

Query: 263 TSEESSL-PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
                 L  +  DF  I   +   ++    L +  ++  E  SHR         ++G  L
Sbjct: 645 AGTLLGLINDVLDFSKIEAGKLELERVQFDLHSLLEDVAEMFSHR-------ANEKGLEL 697

Query: 322 TPETVDKCPIPFFVYSHGNLFYA 344
           +   +   P   +      +   
Sbjct: 698 SCRILPGVPTNVY-GDPERIRQV 719


>gi|282901163|ref|ZP_06309093.1| Multi-sensor Signal Transduction Histidine Kinase
           [Cylindrospermopsis raciborskii CS-505]
 gi|281193937|gb|EFA68904.1| Multi-sensor Signal Transduction Histidine Kinase
           [Cylindrospermopsis raciborskii CS-505]
          Length = 968

 Score =  365 bits (937), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 111/528 (21%), Positives = 213/528 (40%), Gaps = 38/528 (7%)

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-------HGNLFYANP 346
             S +S       +   +     E ++   +     P P  ++           L   N 
Sbjct: 465 GESFQSMSEDLALSFARIKTALKESQDKFAKIFHSSPDPILIHQIITKILQGCVLLDVNA 524

Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
           SFL  T Y  V+ I  +    +L+  P+       + ++  +        +     +  +
Sbjct: 525 SFLNFTGYSEVELIGYSFDNLSLVSNPE------QELLLKEQLKNQGYVRNLEFDWLTKS 578

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
            E   ++        +          I  +  D +  +  +     +  +  E    G+A
Sbjct: 579 GEVKTSLVSCESIVIDNKN---SVISIIKDITDRKKAEENLRQSEERFRTAFENAGSGMA 635

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
           +++  G  +  NRA+ ++ GY   D+L K  T  +             + LS       +
Sbjct: 636 LVSLNGYFIRVNRALCQMLGYDSRDLLTKNVTELITGEELPKDFDLAYQFLS-GQITNYQ 694

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKES 582
                  K  K++ + + +  L   +     +   + DISE  + +              
Sbjct: 695 VEKSCLHKSGKIIWVLLNVSLLCDVNGNPLHFIWQIQDISERHEVE-------------- 740

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
             K++F++ VSHE+RTPLTAI G  E++              +       +   +L +VN
Sbjct: 741 QLKNEFVSVVSHEVRTPLTAIKGALEILATGILVDEPQE-AEQMLKIAVSNSERLLRLVN 799

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS-FANNIPRILADL 701
           ++L++  ++SGKM L+ E   ++  V +A+  VQ  A +  I I  S       +ILAD 
Sbjct: 800 NILNLEMLDSGKMRLNLELCDINIMVKQAMETVQPIAQQNSIEISYSALDVPNTKILADE 859

Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761
            ++ Q+  N+LSN++ F+ +G ++ I  T   ++E+I+ V+D G G+  ++LE   + F 
Sbjct: 860 ETIIQVLTNLLSNSVKFSHAGTKVEIYVTM-GDKEIIVAVKDYGKGVPPHKLETIFERFE 918

Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           Q+  S   +  GTGLGL + K +V  + GK ++ S    G+      P
Sbjct: 919 QVDVSDSRQKGGTGLGLAICKNIVQKHQGKIWVESILDSGSTFYFTLP 966



 Score = 45.8 bits (107), Expect = 0.027,   Method: Composition-based stats.
 Identities = 8/108 (7%), Positives = 32/108 (29%), Gaps = 2/108 (1%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +  +GY   ++  L + +G  +  ++   + ++     +  +  +            +  
Sbjct: 637 VSLNGYFIRVNRALCQMLGYDSRDLLTKNVTELITGEELPKDFDLAYQFLSGQITNYQVE 696

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRAL 196
              +  +   + + L    +   N     F     +      ++   L
Sbjct: 697 KSCLHKSGKIIWVLLNVSLLCDVNGNPLHFIW--QIQDISERHEVEQL 742



 Score = 40.4 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/136 (10%), Positives = 39/136 (28%), Gaps = 5/136 (3%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEG 154
           L +++       G    ++IG    ++S + + +    + + LK Q         W  + 
Sbjct: 519 LLDVNASFLNFTGYSEVELIGYSFDNLSLVSNPEQELLLKEQLKNQGYVRNLEFDWLTK- 577

Query: 155 TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214
           +       ++   I   N+         I+             ++ +++F    E     
Sbjct: 578 SGEVKTSLVSCESIVIDNKNSV----ISIIKDITDRKKAEENLRQSEERFRTAFENAGSG 633

Query: 215 SSVEKEKYDIFSQQSP 230
            ++             
Sbjct: 634 MALVSLNGYFIRVNRA 649


>gi|196047471|ref|ZP_03114682.1| sensory box histidine kinase PhoR [Bacillus cereus 03BB108]
 gi|225866565|ref|YP_002751943.1| sensory box histidine kinase PhoR [Bacillus cereus 03BB102]
 gi|196021686|gb|EDX60382.1| sensory box histidine kinase PhoR [Bacillus cereus 03BB108]
 gi|225790974|gb|ACO31191.1| sensory box histidine kinase PhoR [Bacillus cereus 03BB102]
          Length = 587

 Score =  365 bits (937), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 91/388 (23%), Positives = 179/388 (46%), Gaps = 26/388 (6%)

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           +           +   + +  +E E    +L +++E    G+ +I+  G I   NR+  +
Sbjct: 216 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 275

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542
            F    E+ L + +           +   + EI   +++   + +  LG  ++   +   
Sbjct: 276 TFHVTDEEYLDRLYYESFHHT---EIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 332

Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
            II          L  HDI+E K+ +                + DFLA VSHE++TP+T+
Sbjct: 333 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 378

Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           I GFSE + +   G + N ++ E + + I +    +  ++ DLLD+SKIE     L    
Sbjct: 379 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLSVGT 435

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           V +   + +   ++   A EK I ++ +    +  ++ D   ++QI +N+++NAI +TP+
Sbjct: 436 VDMKGLLEDIHMVLDNKAGEKEISLQVNTLKRV-SVIGDPSRLQQIFINLMNNAIVYTPA 494

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           GG + +           ++V DTG+G++  E+ +  + F ++  ++     GTGLGL + 
Sbjct: 495 GGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIV 553

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           K +V+A+ G   + S   +GT   ++ P
Sbjct: 554 KHLVEAHHGTITVDSEVGEGTTFTVVLP 581


>gi|288940787|ref|YP_003443027.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
 gi|288896159|gb|ADC61995.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
          Length = 1377

 Score =  365 bits (936), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 109/644 (16%), Positives = 224/644 (34%), Gaps = 31/644 (4%)

Query: 189 VDNDPRALGKRLDKKFSHLHEIKKG--HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY 246
                        +++  L E      +      +Y   S           ++  +  + 
Sbjct: 344 ERQREARRLSESREQYQVLAEYSPDWEYWLGPDGRYRYVSPACRELSGHTADEFLADPDL 403

Query: 247 YA---HKDDVLKTEKY---PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF 300
            A   H +D     ++    L + +      Q      +  ++  +     +        
Sbjct: 404 IARLVHPEDRAHWMRHYTDALESCQADRDAIQMRLRARDGREHWVEHICNPVITADGRYL 463

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDD 359
                    +     +         V++ P    +    G + Y N +F+  T Y   + 
Sbjct: 464 GRRGVFRDITERKRIESELTKRSLAVEQSPESIVITDLDGRIEYVNDAFIANTGYTRAEA 523

Query: 360 IEIAGGL-------STLLDAPK---LSDNNAIKPVMLYRSDRTCIAASARLHTIQ-WNRE 408
           +     +         + D      L        ++  R +       A +  I+  +  
Sbjct: 524 LGQNPRILKSGRTPKAIFDELWACLLRGEVWHGELVNRRKNGELYTEVASISPIRQSDGR 583

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468
            +  +         +      +      +        ++  ++  L ++++       + 
Sbjct: 584 ITHYLAIKSNVTEQKRLAEELEQYRHHLEELVEARTLELRQQMRSLKALIDNLPHMAWMK 643

Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528
           +REG  ++ NRA +++ G   ++I+                     E+++   ++T  ++
Sbjct: 644 DREGRFVAVNRAFAEIKGRSPDEIIGLTDHDLWPGELAERYRADDAEVMAGRCQRT--RV 701

Query: 529 TLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
               T    +                       DI   ++ + +L+H  ++AE     KS
Sbjct: 702 MPSVTNPGAIYETFKAPIIDDTDEVLGTVGFARDIRPQREMEAELAHRAELAESAVRAKS 761

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
            FLA +SHEIRTP+ AI+G + +++     P    R     + I+ +   +L ++ND+LD
Sbjct: 762 AFLANMSHEIRTPMNAILGLAHLLRRDLIDPANINR----LDKIESAARHLLAVINDILD 817

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706
           +SKIE+GK+ L  E  S    V +  SL+   A  K + ++      +P +  D+  ++Q
Sbjct: 818 LSKIEAGKLQLSDENFSAVMLVDQVSSLILDEARAKGLSLKVDLDPELPWMRGDVTRLRQ 877

Query: 707 IALNILSNAIHFTPSG-GQIIISTTHTSNE--EVILRVRDTGVGMTNYELEKAMKPFGQI 763
             LN  SNA+ FT +G   I +       E   V   V DTG+G+   +  +  + F Q 
Sbjct: 878 ALLNYASNAVKFTHTGFVTIRVRLQERDAEGLTVRFEVEDTGIGIPPDKQARLFQAFEQA 937

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
             S   R  GTGLGL +   +     G+    S   +G+     
Sbjct: 938 DTSTTRRYGGTGLGLAITAQLARMMGGEAGADSVAGRGSTFWFT 981



 Score = 77.8 bits (190), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 37/400 (9%), Positives = 93/400 (23%), Gaps = 41/400 (10%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMR--LCDVSDILHIDP-NNHIGDLLKRQNTWYG 145
           +   G  + +S    +  G+ A + +     +  +           H  D L+       
Sbjct: 373 LGPDGRYRYVSPACRELSGHTADEFLADPDLIARLVHPEDRAHWMRHYTDALESCQADRD 432

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG--KRLDKK 203
              +           ++    P+ + +  + G RG  +           +    + L  +
Sbjct: 433 AIQMRLRARDGREHWVEHICNPVITADGRYLGRRG--VFRDITERKRIESELTKRSLAVE 490

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
            S    +        +   D F   +         +   + +       +       LL 
Sbjct: 491 QSPESIVITDLDGRIEYVNDAFIANTGYTRAEALGQNPRILKSGRTPKAIFDELWACLLR 550

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN---------------- 307
            E      +      N   YT+      ++ +      YL+ ++                
Sbjct: 551 GEV--WHGELVNRRKNGELYTEVASISPIRQSDGRITHYLAIKSNVTEQKRLAEELEQYR 608

Query: 308 ------HPSLSAYFDEGENLTPETVDKCP-IPFFVYSHGNLFYANPSFLLLTKYKSVDDI 360
                   + +    +        +D  P + +     G     N +F  +      + I
Sbjct: 609 HHLEELVEARTLELRQQMRSLKALIDNLPHMAWMKDREGRFVAVNRAFAEIKGRSPDEII 668

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
            +      L          A    ++            R   +                 
Sbjct: 669 GLTDH--DLWPGELAERYRADDAEVMAGR-------CQRTRVMPSVTNPGAIYETFKAPI 719

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
            +   E +   G   +    R  + ++        S + A
Sbjct: 720 IDDTDEVLGTVGFARDIRPQREMEAELAHRAELAESAVRA 759



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/327 (8%), Positives = 87/327 (26%), Gaps = 33/327 (10%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147
            D  G ++ +++      G    + +G     +          + +   L R   W+G+ 
Sbjct: 499 TDLDGRIEYVNDAFIANTGYTRAEALGQNPRILKSGRTPKAIFDELWACLLRGEVWHGEL 558

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF--GIVHVNRVDNDPRALGKRLD---- 201
                 G         +  PI   +   + +      +    R+  +       L+    
Sbjct: 559 VNRRKNGELY--TEVASISPIRQSDGRITHYLAIKSNVTEQKRLAEELEQYRHHLEELVE 616

Query: 202 ----------KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL--RMKNKVSSLTEYYAH 249
                     +    L +     + ++  +    +       +  R  +++  LT++   
Sbjct: 617 ARTLELRQQMRSLKALIDNLPHMAWMKDREGRFVAVNRAFAEIKGRSPDEIIGLTDHDLW 676

Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
             ++ +  +                  ++       + +   + +++ E    +      
Sbjct: 677 PGELAERYRADDAEVMAGRCQRTRVMPSVTNPGAIYETFKAPIIDDTDEVLGTVGFARDI 736

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
                 +       E  +                A  +FL    ++    +    GL+ L
Sbjct: 737 RPQREMEAELAHRAELAESA------------VRAKSAFLANMSHEIRTPMNAILGLAHL 784

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAA 396
           L    +   N  +   +  + R  +A 
Sbjct: 785 LRRDLIDPANINRLDKIESAARHLLAV 811



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/376 (10%), Positives = 87/376 (23%), Gaps = 20/376 (5%)

Query: 87   WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTWYG 145
            W  D  G    ++    +  G    ++IG+   D+      +       +++  +     
Sbjct: 641  WMKDREGRFVAVNRAFAEIKGRSPDEIIGLTDHDLWPGELAERYRADDAEVMAGRCQRTR 700

Query: 146  KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
                    G       +    PI     E  G  GF      R   +  A      +   
Sbjct: 701  VMPSVTNPGAIY----ETFKAPIIDDTDEVLGTVGFA--RDIRPQREMEAELAHRAELAE 754

Query: 206  HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
                 K    +    +              ++  +        ++ D +++    LL   
Sbjct: 755  SAVRAKSAFLANMSHEIRTPMNAILGLAHLLRRDLID--PANINRLDKIESAARHLLAVI 812

Query: 266  ESSL-------PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
               L        + +             Q    + + ++     L     P L     + 
Sbjct: 813  NDILDLSKIEAGKLQLSDENFSAVMLVDQVSSLILDEARAKGLSLKVDLDPELPWMRGDV 872

Query: 319  ENLTPETVDKCPIPFFVYSHG----NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
              L    ++           G     +         LT    V+D  I           +
Sbjct: 873  TRLRQALLNYASNAVKFTHTGFVTIRVRLQERDAEGLTVRFEVEDTGIGIPPDKQARLFQ 932

Query: 375  LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
              +         Y      +A +A+L  +      + ++                Q G+ 
Sbjct: 933  AFEQADTSTTRRYGGTGLGLAITAQLARMMGGEAGADSVAGRGSTFWFTVKLKPGQPGLL 992

Query: 435  PEDVDTRINKRKMEIE 450
                     + +M   
Sbjct: 993  VTHAHRLAAESEMRDR 1008



 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/203 (12%), Positives = 70/203 (34%), Gaps = 4/203 (1%)

Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
           +D     A   LH  +++  + L         A      + Q  ++ ++ +   ++R+ +
Sbjct: 25  ADEIRERALTALHQGRFHIADELLQGANAELTAMVESLRIYQVELQIQNDELLRSQRQTQ 84

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
           + + +  +          +++R G++   N A   LF      I +  FT  + +    +
Sbjct: 85  LALERFTAFFNGLPIAELVVDRHGLVKEANYAAQDLFELKHSHIHQHYFTRLISETDRGL 144

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEW 564
           +       L  + R    K    + +  +     + +  L         Y   + D +E 
Sbjct: 145 VAELWKRRLPEERRTLTLKEIHFNGRAGEPFIGDLHVAPLSDFEGESDDYVCAILDRTES 204

Query: 565 KQEKNKLSHAKKIAEKESSHKSD 587
            +++  L    +  ++  +   +
Sbjct: 205 VRQRQALHAYGERLQRHEAELQE 227


>gi|285018741|ref|YP_003376452.1| two-component system sensor-response regulator hybrid protein
           [Xanthomonas albilineans GPE PC73]
 gi|283473959|emb|CBA16460.1| putative two-component system sensor-response regulator hybrid
           protein [Xanthomonas albilineans]
          Length = 1370

 Score =  365 bits (936), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 128/644 (19%), Positives = 223/644 (34%), Gaps = 41/644 (6%)

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPP--PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
           + E+         + Y   +    P  P  R  +   +     A     +++        
Sbjct: 240 IAEMLASSPYHGSDLYLTVADSQSPDQPFYRGDSSGHASPAVGATNLRAVRSLPVYGRQW 299

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
             +         ++N +            +    +  YLS  N      +  E   L   
Sbjct: 300 RLTMQATPSFVRSLNQSSPLLDGGLVAGVSMLLAALLYLSLTNRHRRDLFLREQSQLAAL 359

Query: 325 TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
                         G + + NP+   +  Y +   I     L TLL +     +N    V
Sbjct: 360 VGSTSEAIVAEDLQGRVTHWNPAATRIFGYTAAQAIGQP--LHTLLGSHLRDASNGDTQV 417

Query: 385 M-LYRSDRTCIAASARLHTI-QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             L+  +   +   A +  I   +         +         E          +     
Sbjct: 418 RELHHRNGQTVNVLASVSPIIDVDGNTIGHSHLLHDVTERVRAEARVLELNATLEQQVAQ 477

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
              ++        +IL      I   + EG I   N A   L GY  + ++ +  T    
Sbjct: 478 RTSELVTYSALQRAILAHAGYAIIATDPEGTITLFNPAAETLLGYTAQAMIGRKATGLFL 537

Query: 503 QNTPSVMNHYLTEILSLDLRQT--------------LEKITLGSTKEEKLLSLRIIIKKL 548
                        I S    Q                 +      K+   L + + +  L
Sbjct: 538 DPEQLAERAERMTIQSGIKVQPAFESIAALSTLGRSDTREWTYVNKDGLALPVLLTLSTL 597

Query: 549 PFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
                    Y     D++E  + + +L  A   AE  +  KSDFLA +SHEIRTP+ AI+
Sbjct: 598 RDDDERVIGYLGIAVDLTEQMRRERELRLAIDAAETANQSKSDFLANMSHEIRTPMNAIL 657

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           G   +++N            +     D S   +LDI+ND+LD SKIESG+++L  EP  L
Sbjct: 658 GMLYLLQNSELPQAA----KDMIQKTDISARALLDIINDILDFSKIESGRIDLESEPFDL 713

Query: 665 DEAVSEAISLVQLYANEKRILIRTS-FANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
            + +    +L+    + K + +           +  D   + Q+ +N++ NAI FT  G 
Sbjct: 714 SQLLENIATLMTTAISAKPVEMIVEPLPKGCRWLRGDALRLNQVLVNLVGNAIKFTEQG- 772

Query: 724 QIIISTTHTSNEEV-----ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
           ++ +S     + EV     +  VRDTG+G+   +      PF Q   S   R  G+GLGL
Sbjct: 773 EVTLSVRAFPSPEVGKIKLMFSVRDTGIGIPREKQSLIFSPFLQADTSTSRRYGGSGLGL 832

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEI-----IFPLYDTSHPH 817
            +++ +V+   G+  + STP +G+         + P   T+ P 
Sbjct: 833 TISRRLVELMGGQLEVQSTPNRGSDFYFAITFAMLP-APTAEPE 875



 Score = 86.2 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 54/443 (12%), Positives = 128/443 (28%), Gaps = 63/443 (14%)

Query: 169 YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228
               REF G  GFG +H  RV             +        +  +  + + + I   Q
Sbjct: 99  RDYKREFPGVHGFGYIH--RVARADETAFLSEAHEDGMPALQIRELAPHDGDHFVILYSQ 156

Query: 229 SP-----PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY 283
            P          + ++ +      A       T   P+   E +S    E    + + + 
Sbjct: 157 PPGQNNFAQGFDIASEPAQRAAALAAAYSGNSTITSPIQPFETTSNDNSEFLLLLPIYRA 216

Query: 284 TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY 343
                    +  +   + Y        L++    G +L     D        Y   +  +
Sbjct: 217 GMPLETPQQRWQATTGWAYAPLNIAEMLASSPYHGSDLYLTVADSQSPDQPFYRGDSSGH 276

Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403
           A+P+        ++  +                     +   L          S    + 
Sbjct: 277 ASPA----VGATNLRAVRSLPVYG--------------RQWRLTMQATPSFVRSLNQSSP 318

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
             +      ++ +          N  +  +                E  QL +++ +TS+
Sbjct: 319 LLDGGLVAGVSMLLAALLYLSLTNRHRRDLF-------------LREQSQLAALVGSTSE 365

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
            I   + +G +   N A +++FGY     + +P    L  +             S    Q
Sbjct: 366 AIVAEDLQGRVTHWNPAATRIFGYTAAQAIGQPLHTLLGSHLRDA---------SNGDTQ 416

Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAE 579
             E       +  + +++   +  +      ++     +HD++E  + + ++       E
Sbjct: 417 VRE----LHHRNGQTVNVLASVSPIIDVDGNTIGHSHLLHDVTERVRAEARVLELNATLE 472

Query: 580 KESSHKSDFL--------ARVSH 594
           ++ + ++  L        A ++H
Sbjct: 473 QQVAQRTSELVTYSALQRAILAH 495



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/283 (9%), Positives = 67/283 (23%), Gaps = 23/283 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGM----------RLCDVSDILHIDPNNHIGDLLK 138
            D  G +   +      +G  A  MIG           +L + ++ + I     +    +
Sbjct: 503 TDPEGTITLFNPAAETLLGYTAQAMIGRKATGLFLDPEQLAERAERMTIQSGIKVQPAFE 562

Query: 139 RQNTWYGK----TTLW-PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193
                       T  W  +    L +P+ L    +   +    G+ G  +          
Sbjct: 563 SIAALSTLGRSDTREWTYVNKDGLALPVLLTLSTLRDDDERVIGYLGIAV--DLTEQMRR 620

Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253
               +         ++ K    +    +              ++N           +   
Sbjct: 621 ERELRLAIDAAETANQSKSDFLANMSHEIRTPMNAILGMLYLLQNSELPQAAKDMIQKTD 680

Query: 254 LKTEKYPLLTSEESSLPEQEDFH------TINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
           +       + ++     + E           +L+Q  +          S +  E +    
Sbjct: 681 ISARALLDIINDILDFSKIESGRIDLESEPFDLSQLLENIATLMTTAISAKPVEMIVEPL 740

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLL 350
                    +   L    V+           G +  +  +F  
Sbjct: 741 PKGCRWLRGDALRLNQVLVNLVGNAIKFTEQGEVTLSVRAFPS 783



 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/373 (9%), Positives = 85/373 (22%), Gaps = 22/373 (5%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D  G +   +    +  G  A + IG  L  +      D +N         +T   +   
Sbjct: 371 DLQGRVTHWNPAATRIFGYTAAQAIGQPLHTLLGSHLRDASN--------GDTQVRELHH 422

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
                    V +  +  PI   +    G     ++H         A    L+        
Sbjct: 423 RN----GQTVNVLASVSPIIDVDGNTIGHSH--LLHDVTERVRAEARVLELNATLEQQVA 476

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
            +                      +   +   ++T +    + +L      ++  + + L
Sbjct: 477 QRTSELVTYSALQRAI-LAHAGYAIIATDPEGTITLFNPAAETLLGYTAQAMIGRKATGL 535

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
               +       + T +            +      R+      Y ++     P  +   
Sbjct: 536 FLDPEQLAERAERMTIQSGIKVQPAFESIAALSTLGRSDTREWTYVNKDGLALPVLLTLS 595

Query: 330 PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389
                      +       + LT+    +        +        SD  A     +   
Sbjct: 596 T---LRDDDERVIGYLGIAVDLTEQMRRERELRLAIDAAETANQSKSDFLANMSHEIRTP 652

Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449
               +     L   +  +     +              +       +       +  +E 
Sbjct: 653 MNAILGMLYLLQNSELPQAAKDMIQKTDISARA----LLDIINDILDFSKIESGRIDLES 708

Query: 450 EVMQLCSILEATS 462
           E   L  +LE  +
Sbjct: 709 EPFDLSQLLENIA 721


>gi|262165591|ref|ZP_06033328.1| hypothetical protein VMA_002038 [Vibrio mimicus VM223]
 gi|262025307|gb|EEY43975.1| hypothetical protein VMA_002038 [Vibrio mimicus VM223]
          Length = 1325

 Score =  365 bits (936), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 101/375 (26%), Positives = 174/375 (46%), Gaps = 12/375 (3%)

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
            R+ +RK+  +      IL+AT + +  ++  G  L+ N    +L G    D++ KP   
Sbjct: 460 QRLAERKVLEQSQLNQEILDATPNPMYCLSANGTFLTVNAKFLELMGLYNNDVIGKPPQE 519

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLT 557
               +           +      Q  E   +     ++ + +            +     
Sbjct: 520 IFPSSVAERFAQAHQILTQQQSSQNYEISLIDYAGVQREMLVYEASFSDRADKVNGIVGI 579

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
           + D++E K+ + +L  AK  A+  S  K DFLA +SHEIRTP+ AI+G + +  N +   
Sbjct: 580 LLDMTERKEMEQELREAKDAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTQL-- 637

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
             +    +Y   I+ S   +L I+ND+LD SKIE+GK+++     SLD+ +    +++ L
Sbjct: 638 --DATQRKYVTRINESAKNLLGIINDILDFSKIEAGKLDVERIDFSLDDVLDNVTAVISL 695

Query: 678 YANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
            A EK I        +IP  ++ D   + Q+ +N+  NA+ FT  G +I+IS       E
Sbjct: 696 KAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTQQG-EIVISARVRQLNE 754

Query: 737 ----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
               ++  V+DTG+G+   +L      F Q  NS   +  GTGLGL ++K +V+   G+ 
Sbjct: 755 QQVMLLFAVKDTGIGIAQEKLSDLFNAFSQADNSITRQYGGTGLGLSISKQLVELMGGQI 814

Query: 793 YIFSTPAKGTLIEII 807
            + S   KG+  E  
Sbjct: 815 SVHSEEGKGSTFEFS 829



 Score = 45.4 bits (106), Expect = 0.041,   Method: Composition-based stats.
 Identities = 16/144 (11%), Positives = 47/144 (32%), Gaps = 5/144 (3%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL-KRQNTWY 144
            + + A+G    ++ +  + +G Y   +IG    ++      +       +L ++Q++  
Sbjct: 485 MYCLSANGTFLTVNAKFLELMGLYNNDVIGKPPQEIFPSSVAERFAQAHQILTQQQSSQN 544

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            + +L    G    + +  A+     R  + +G    GI+       +     +      
Sbjct: 545 YEISLIDYAGVQREMLVYEAS--FSDRADKVNGI--VGILLDMTERKEMEQELREAKDAA 600

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQ 228
             + + K    +    +       
Sbjct: 601 DAMSQAKGDFLANMSHEIRTPMNA 624



 Score = 45.0 bits (105), Expect = 0.049,   Method: Composition-based stats.
 Identities = 28/263 (10%), Positives = 63/263 (23%), Gaps = 33/263 (12%)

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
           L      +   E      L+          L + S       +            E   L
Sbjct: 414 LQVNHQPIGLLELGTVGMLSIQQYHWLSQMLDDLSVAIQLTQNAELQRLAERKVLEQSQL 473

Query: 322 TPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
             E +D  P P   + ++G     N  FL L    + D I               S    
Sbjct: 474 NQEILDATPNPMYCLSANGTFLTVNAKFLELMGLYNNDVIGKPP------QEIFPSSVAE 527

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
                     +   + +  +  I +       + +      ++  +     GI  +  + 
Sbjct: 528 RFAQAHQILTQQQSSQNYEISLIDYAGVQREMLVYEASFS-DRADKVNGIVGILLDMTER 586

Query: 441 RINKRKMEIEVMQLCSI-------LEATS-------DGIAI---------INREGI--IL 475
           +  ++++        ++       L   S       + I           ++      + 
Sbjct: 587 KEMEQELREAKDAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTQLDATQRKYVT 646

Query: 476 STNRAVSKLFGYPVEDILRKPFT 498
             N +   L G   + +      
Sbjct: 647 RINESAKNLLGIINDILDFSKIE 669


>gi|75906870|ref|YP_321166.1| multi-sensor signal transduction histidine kinase [Anabaena
            variabilis ATCC 29413]
 gi|75700595|gb|ABA20271.1| multi-sensor signal transduction histidine kinase [Anabaena
            variabilis ATCC 29413]
          Length = 1741

 Score =  365 bits (936), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 115/742 (15%), Positives = 260/742 (35%), Gaps = 38/742 (5%)

Query: 86   TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI--GDLLKRQNTW 143
             + +D       ++++  K       +++G  + +      I     I    ++      
Sbjct: 1024 IYVMDLQNRFILVNQQYEKLFHTTQSEIVGKSVYETW-PDDIAYQYAINNRQVITTGMAI 1082

Query: 144  YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
              +  +   +G + Y+ I     P+  RN     +   GI               R  K 
Sbjct: 1083 EVEEMVPQEDGLHTYLSIKF---PLKDRNGII--YAMCGISTDITERKLAEDSLLRFHKA 1137

Query: 204  FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
                 +       +    Y   S Q    +   + + +        +    +     ++ 
Sbjct: 1138 MESTSDAIIFGDILNISNYANPSFQELYGYNLEQLQAAGGVCTIFQEPQKQREIMARVMK 1197

Query: 264  SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
             E  S   +    + + +          +++++ +    +      +     +EG  L  
Sbjct: 1198 GE--SWRGEVAMRSRDGHLLQVDLRADAIRDSNGKIIGTVCIHTDITKRQQVEEGLKLRD 1255

Query: 324  ETVDKCPIPFFVYSHGN----LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
              +D       +         + Y NP+F  +T Y S + I        L  +  +    
Sbjct: 1256 RAIDASSNGIIIADASTPNRPIIYVNPAFERMTGYSSDEVIGQNF---RLFQSADIDQLG 1312

Query: 380  AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
              +   L  + +   A +  L   + +  + L          +Q  +     GI+ +  +
Sbjct: 1313 LRE---LSTAMQAGKACTVVLRNYRKDG-SLLWNELNISPVYDQTGQLTHYIGIQTDITE 1368

Query: 440  TRINKRKMEIEVMQLCSILEATSDGIAIINREGII--LSTNRAVSKLFGYPVEDILRKP- 496
             +  +  + +   +L  +L ++   I      G    +  +  ++ + GY  ++ +    
Sbjct: 1369 RKQAETALLVSQQRLQYLLTSSPAVIYTCKTCGDFGSIFVSNNITTITGYEAQEFIENSD 1428

Query: 497  -FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--- 552
             +   +       +   L+ +L     +T +       K+     L    + +   +   
Sbjct: 1429 FWFNHIHPEDAPSVLKKLSSVLE---AETYKLEYRFLHKDGTYHWLYDQRRVVKDDTKNP 1485

Query: 553  -CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
                  + DI++ KQ +  L  A +  ++ S  KS F++  SHE RTPL+ I+  SE + 
Sbjct: 1486 VEMVGYLIDITDRKQLEEYLKVALEKEKELSELKSRFVSMTSHEFRTPLSTILSSSE-LL 1544

Query: 612  NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
                      + + + + I  +   + +++ND+L I K E+GK+    +P+ +       
Sbjct: 1545 EHYRHKWTEEKQLTHLHRIQTAVKRMTEMLNDILIIGKAEAGKLEFMPKPLDVVAYCRNL 1604

Query: 672  ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
            +  +QL  N K++   + + +       D + +  I +N++SNAI ++P    + +    
Sbjct: 1605 VEEIQLNLNNKQVDFISEYQS--MSCCMDEKLLGHILINLISNAIKYSPVNSNVQVKFYC 1662

Query: 732  TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
                  +  V D G+G+   ++    + F +  N       GTGLGL + K  VD + G+
Sbjct: 1663 RDQ-CAVFEVHDWGIGIPAEDITHLFESFYRAKNVGN--ILGTGLGLAIVKKCVDVHEGE 1719

Query: 792  FYIFSTPAKGTLIEIIFPLYDT 813
              + S    GTL  +  PL   
Sbjct: 1720 ISVSSNSEIGTLFTVNIPLKQQ 1741



 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 66/507 (13%), Positives = 163/507 (32%), Gaps = 32/507 (6%)

Query: 86   TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI-GDLLKRQNTWY 144
             W +D +     +S +    +G    +++G    D+      +    I   ++  Q  + 
Sbjct: 897  VWEVDENAIYTYVSPKAKDILGYEPQELLGRTPLDMMPPTEAERVMKIFNSIIAAQQPFK 956

Query: 145  -GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
              + T    +G  + +  + + +PI+    +F G+RG           +      +  ++
Sbjct: 957  CLENTNVHQDGHLVVL--ETSGVPIFDAVGKFCGYRGVD--RDITARKEVETNLYQTQQQ 1012

Query: 204  FSHLHEIKKGHSSVEKEKYDIFSQQ---SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
               + +       V   +              H      V          D   +     
Sbjct: 1013 LQVILDNSPAIIYVMDLQNRFILVNQQYEKLFHTTQSEIVGKSVYETWPDDIAYQYAINN 1072

Query: 261  LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
                      E E+        +T       L++ +   +         +     ++   
Sbjct: 1073 RQVITTGMAIEVEEMVPQEDGLHTYLSIKFPLKDRNGIIYAMCGISTDITERKLAEDSLL 1132

Query: 321  LTPETVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
               + ++            N+  YANPSF  L  Y +++ ++ AGG+ T+   P+     
Sbjct: 1133 RFHKAMESTSDAIIFGDILNISNYANPSFQELYGY-NLEQLQAAGGVCTIFQEPQ----- 1186

Query: 380  AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
              + +M                 ++    + L +        +   + +    I  +   
Sbjct: 1187 KQREIMARVMKGESWRGEV---AMRSRDGHLLQVDLRADAIRDSNGKIIGTVCIHTDITK 1243

Query: 440  TRINKRKMEIEVMQLCSILEATSDGIAIINRE--GI-ILSTNRAVSKLFGYPVEDILRKP 496
             +  +  +++        ++A+S+GI I +       I+  N A  ++ GY  ++++ + 
Sbjct: 1244 RQQVEEGLKLRDR----AIDASSNGIIIADASTPNRPIIYVNPAFERMTGYSSDEVIGQN 1299

Query: 497  FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--- 553
            F +F   +   +    L+  +      T+  +     K+  LL   + I  +   +    
Sbjct: 1300 FRLFQSADIDQLGLRELSTAMQAGKACTV--VLRNYRKDGSLLWNELNISPVYDQTGQLT 1357

Query: 554  -YSLTMHDISEWKQEKNKLSHAKKIAE 579
             Y     DI+E KQ +  L  +++  +
Sbjct: 1358 HYIGIQTDITERKQAETALLVSQQRLQ 1384



 Score =  145 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 61/570 (10%), Positives = 137/570 (24%), Gaps = 68/570 (11%)

Query: 70   SENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP 129
            SE  F F       +  W     GYL+ ++    +  GN    ++G +          + 
Sbjct: 588  SEERFRFLAESIPQQ-VWIARPDGYLEYVNRRTLEYFGNVPEAILGWKWQQSIHPDDRNR 646

Query: 130  NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRV 189
               I                W       Y      AL +            FG       
Sbjct: 647  CLEIWQHCVATGEPLDVEFRWLRTTDQTYRWHIGRALALRDSQGNII--NWFGTNTDIDD 704

Query: 190  DNDPRALGKR--------------------LDKKFSHLHEI-----------------KK 212
                                          L        +                  ++
Sbjct: 705  RKRTEEALAERVKLSDFRSAVDTILTQSYTLQDLMHGSADAVVKHLNAAFARIWILNKQE 764

Query: 213  GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ 272
                ++               + +      L             +  PL+++ + +  E 
Sbjct: 765  NLLELQVSSGRYTHLDGSHRCIPVGQCKIGLIAQIGKPHLTNSVQTDPLISNPDWAKQEG 824

Query: 273  EDFHTINLNQYTKKQYFGTL-----QNNSKESFEYLSHRN--------HPSLSAYFDEGE 319
                        + +  G +     Q  S+  F+ L                 A     E
Sbjct: 825  IVA-FAGYPLIVENETLGVIAMFSCQALSESHFQALGIAANQIAIGIKRQQTEAALRHSE 883

Query: 320  NLTPETVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
                  V+      +      +  Y +P    +  Y+  + +         LD    ++ 
Sbjct: 884  ERFRNLVETSSDWVWEVDENAIYTYVSPKAKDILGYEPQELLGRTP-----LDMMPPTEA 938

Query: 379  NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
              +  +                +T      + + +        +   +     G++ +  
Sbjct: 939  ERVMKIFNSIIA-AQQPFKCLENTNVHQDGHLVVLETSGVPIFDAVGKFCGYRGVDRDIT 997

Query: 439  DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
              +  +  +     QL  IL+ +   I +++ +   +  N+   KLF     +I+ K   
Sbjct: 998  ARKEVETNLYQTQQQLQVILDNSPAIIYVMDLQNRFILVNQQYEKLFHTTQSEIVGKSVY 1057

Query: 499  VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY---- 554
                 +          ++++  +   +E   +   ++     L I    L   +      
Sbjct: 1058 ETWPDDIAYQYAINNRQVITTGMA--IEVEEMVPQEDGLHTYLSIKF-PLKDRNGIIYAM 1114

Query: 555  SLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
                 DI+E K  ++ L    K  E  S  
Sbjct: 1115 CGISTDITERKLAEDSLLRFHKAMESTSDA 1144



 Score =  143 bits (360), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 57/529 (10%), Positives = 134/529 (25%), Gaps = 62/529 (11%)

Query: 96  KEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI-GDLLKRQNTWYGKTTLWPIEG 154
              ++   +  G+   + IG    +      +     +          +  +  L  + G
Sbjct: 193 IFFNKAWLELTGSTLEQEIGKSWSEKLHPEDLQGFLDVYLSAFHTHQFFSVEYRLLGLNG 252

Query: 155 TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214
              Y+ +    +P ++ N +F+G+    I           A  +    +     E     
Sbjct: 253 E--YLWLLNIGVPRFTSNGDFAGYINSCI--DITEHKQYFAALEESTNRLKLALEATNTI 308

Query: 215 SSVEKEKYDIFSQQSPPPHLRMKNKVS-SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE 273
                   D     +P        +++ S    + H DD  K +          S  E E
Sbjct: 309 YWERNLSNDQLFFLNPVIEFGDSEELTHSEVMSFFHPDDREKVDMAAQEAIANCSCLEIE 368

Query: 274 DFHTINL-------------------------------------NQYTKKQYFGTLQNNS 296
               +                                        Q   +Q    L+   
Sbjct: 369 HRLPVAGQPSKYKWFLSKSTILTDTTGKPTRMIGISMDITDRVEAQDALEQANQELERRV 428

Query: 297 KESFEYLSHR---------NHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANP 346
            E    L            +         + + +    +D  P    +   +      N 
Sbjct: 429 AERTLALQKANRQLLAEIGDRQIAQEQLRQSQQMLQLVIDTIPHCVFWKDRNSVFLGCNR 488

Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
            F  L  +   ++I         L   + +D +    V +  ++         +  +   
Sbjct: 489 KFAKLLGFDYPENIIGKTAHD-FLANLQDADLHRQSDVRVIETNTPEYHI---VEPLLKP 544

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
               + +        +     +       +  + +  +  +E    +   + E+    + 
Sbjct: 545 NGQKIWLEKNKIPLHDPKGNVVGILSTLEDITERKQVQEALEKSEERFRFLAESIPQQVW 604

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
           I   +G +   NR   + FG   E IL   +   +  +  +         ++      +E
Sbjct: 605 IARPDGYLEYVNRRTLEYFGNVPEAILGWKWQQSIHPDDRNRCLEIWQHCVATGEPLDVE 664

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKL 571
                 T ++           L  S      +  T  DI + K+ +  L
Sbjct: 665 F-RWLRTTDQTYRWHIGRALALRDSQGNIINWFGTNTDIDDRKRTEEAL 712



 Score =  138 bits (347), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 47/545 (8%), Positives = 135/545 (24%), Gaps = 58/545 (10%)

Query: 87   WNIDAHGYLKEISEELPKTIGNYAFK-MIGMRLCDVSDILHIDPNNHIG---DLLKRQNT 142
            W  D +      + +  K +G    + +IG    D    L  D + H      +++    
Sbjct: 476  WK-DRNSVFLGCNRKFAKLLGFDYPENIIGKTAHDFLANL-QDADLHRQSDVRVIETNTP 533

Query: 143  WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
             Y              + ++   +P++       G      +         +   ++ ++
Sbjct: 534  EYHIVEPLLKPN-GQKIWLEKNKIPLHDPKGNVVGI--LSTLEDITERKQVQEALEKSEE 590

Query: 203  KFSHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDD--VLKTE 257
            +F  L E       + +    +               +  +    +   H DD       
Sbjct: 591  RFRFLAESIPQQVWIARPDGYLEYVNRRTLEYFGNVPEAILGWKWQQSIHPDDRNRCLEI 650

Query: 258  KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
                + + E    E     T +            L+++      +             +E
Sbjct: 651  WQHCVATGEPLDVEFRWLRTTDQTYRWHIGRALALRDSQGNIINWFGTNTDIDDRKRTEE 710

Query: 318  GENLTPETVD-------------KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364
                  +  D                      +   + + N +F  +      +++    
Sbjct: 711  ALAERVKLSDFRSAVDTILTQSYTLQDLMHGSADAVVKHLNAAFARIWILNKQENLLELQ 770

Query: 365  GLSTLLDA-PKLSDNNAIKPVML-------------------------YRSDRTCIAASA 398
              S              +    +                         +      +A + 
Sbjct: 771  VSSGRYTHLDGSHRCIPVGQCKIGLIAQIGKPHLTNSVQTDPLISNPDWAKQEGIVAFAG 830

Query: 399  RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458
                ++      +AM        + F             +  +  +  +     +  +++
Sbjct: 831  YPLIVENETLGVIAMFSCQALSESHFQALGIAANQIAIGIKRQQTEAALRHSEERFRNLV 890

Query: 459  EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
            E +SD +  ++   I    +     + GY  +++L +     +       +      I++
Sbjct: 891  ETSSDWVWEVDENAIYTYVSPKAKDILGYEPQELLGRTPLDMMPPTEAERVMKIFNSIIA 950

Query: 519  LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHA 574
                           ++  L+ L      +  +      Y     DI+  K+ +  L   
Sbjct: 951  AQQP-FKCLENTNVHQDGHLVVLETSGVPIFDAVGKFCGYRGVDRDITARKEVETNLYQT 1009

Query: 575  KKIAE 579
            ++  +
Sbjct: 1010 QQQLQ 1014



 Score = 78.5 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 55/461 (11%), Positives = 124/461 (26%), Gaps = 73/461 (15%)

Query: 182 GIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS 241
            +V+             R+      L  I    +S                   ++ ++ 
Sbjct: 157 AVVNPLDAIGASDESLWRVANTAPILIWISATDTSCIFFNKAWLEL----TGSTLEQEIG 212

Query: 242 SLTEYYAHKDDVLKTEKYPLLTS-EESSLPEQEDFHTINLNQYTK----KQYFGTLQNNS 296
                  H +D+       L           +     +N             F +  + +
Sbjct: 213 KSWSEKLHPEDLQGFLDVYLSAFHTHQFFSVEYRLLGLNGEYLWLLNIGVPRFTSNGDFA 272

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV--YSHGNLFYANPSFLLLTKY 354
                 +    H    A  +E  N     ++     ++    S+  LF+ NP    + ++
Sbjct: 273 GYINSCIDITEHKQYFAALEESTNRLKLALEATNTIYWERNLSNDQLFFLNP----VIEF 328

Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
              +++  +  +S      +   + A +      ++ +C+    RL  +           
Sbjct: 329 GDSEELTHSEVMSFFHPDDREKVDMAAQE---AIANCSCLEIEHRL-PVAGQPSKYKWFL 384

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDT---------------------------------- 440
                  +   +     GI  +  D                                   
Sbjct: 385 SKSTILTDTTGKPTRMIGISMDITDRVEAQDALEQANQELERRVAERTLALQKANRQLLA 444

Query: 441 -----RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP-VEDILR 494
                +I + ++      L  +++     +   +R  + L  NR  +KL G+   E+I+ 
Sbjct: 445 EIGDRQIAQEQLRQSQQMLQLVIDTIPHCVFWKDRNSVFLGCNRKFAKLLGFDYPENIIG 504

Query: 495 KPFTVFLEQ-NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553
           K    FL       +       ++  +  +      L      + + L      L     
Sbjct: 505 KTAHDFLANLQDADLHRQSDVRVIETNTPEYHIVEPLLK-PNGQKIWLEKNKIPLHDPKG 563

Query: 554 ----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
                  T+ DI+E KQ +  L        ++S  +  FLA
Sbjct: 564 NVVGILSTLEDITERKQVQEAL--------EKSEERFRFLA 596



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 39/326 (11%), Positives = 91/326 (27%), Gaps = 37/326 (11%)

Query: 324 ETVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
              +  PI  ++ +      + N ++L LT   +++          L         +   
Sbjct: 174 RVANTAPILIWISATDTSCIFFNKAWLELTG-STLEQEIGKSWSEKLHPEDLQGFLDVYL 232

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
                       +   RL  +       L +  I   +     +         +  + + 
Sbjct: 233 SAFHTH---QFFSVEYRLLGL---NGEYLWLLNIGVPRFTSNGDFAGYINSCIDITEHKQ 286

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
               +E    +L   LEAT+      N     +   N  +   FG   E++       F 
Sbjct: 287 YFAALEESTNRLKLALEATNTIYWERNLSNDQLFFLNPVIE--FG-DSEELTHSEVMSFF 343

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLT 557
             +    ++    E ++      +E     + +  K          L  ++         
Sbjct: 344 HPDDREKVDMAAQEAIANCSCLEIEHRLPVAGQPSKYKWFLSKSTILTDTTGKPTRMIGI 403

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
             DI++  + ++ L  A +  E+  + ++                     +    Q    
Sbjct: 404 SMDITDRVEAQDALEQANQELERRVAERT------------------LALQKANRQLLAE 445

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVND 643
           +G+    + A    R    +L +V D
Sbjct: 446 IGD---RQIAQEQLRQSQQMLQLVID 468


>gi|149191397|ref|ZP_01869648.1| RscS; sensor kinase protein [Vibrio shilonii AK1]
 gi|148834746|gb|EDL51732.1| RscS; sensor kinase protein [Vibrio shilonii AK1]
          Length = 836

 Score =  365 bits (936), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 104/405 (25%), Positives = 188/405 (46%), Gaps = 17/405 (4%)

Query: 423 QFPENMPQNGIEPEDVDTRINKRKM----EIEVMQLCSILEATSDGIAIINREGIILSTN 478
                +       +       + ++    E E  +L ++++ T D + I +++G I   N
Sbjct: 294 GRRLIINPFQKLEQSRTQLAQQAELLMNKEREATRLANVVKHTRDAVLITDKQGRIEWVN 353

Query: 479 RAVSKLFGYPVEDILR-KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
           +A   + G+  ++I+  KP T+   + +       L + +       +E +    TK+  
Sbjct: 354 QAFESMTGFHKDEIIGIKPGTLLQGKGSNEKAIEKLRKAVKEQQPTRVEILNFSRTKQAY 413

Query: 538 LLSLRIII--KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
            + + I            +     DI+  K+ + KL +A   A+  +  K+ FLA +SHE
Sbjct: 414 WVDIEISPVFGANGELDKFIAVERDITATKKLQRKLENAVVAADSANIAKTQFLATMSHE 473

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           IRTP+  ++G  +V+ ++      + +  E  + I  SGN ++ I+ND+LD++K+E  K+
Sbjct: 474 IRTPMNGVLGMVQVMLSEA----KDKQQKENLSLILESGNHLISILNDILDLTKVEQNKI 529

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRIL--IRTSFANNIPRILADLRSVKQIALNILS 713
            L   P ++++ ++   S  Q    EK I   I      N+   L D   V+Q+  N+L+
Sbjct: 530 ELESCPFNIEQIIAPLRSTYQAVCQEKGIELNIECHIDANM-TFLGDRNRVRQVMYNLLN 588

Query: 714 NAIHFTPSGG-QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           NAI FT  GG  ++I+   T+   +   V+D+G+G+    LE+  +PF Q   S      
Sbjct: 589 NAIKFTERGGVTVVITNNPTTPSLLRFSVQDSGIGIETSALERIFEPFVQADASTTREYG 648

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTL--IEIIFPLYDTSH 815
           GTGLGL + K +V+   G     S   +GT    EI  P+ D  H
Sbjct: 649 GTGLGLAIVKQLVEKMGGTIDATSEQGQGTRFEFEIKLPVTDGEH 693



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/194 (12%), Positives = 57/194 (29%), Gaps = 10/194 (5%)

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
            ++  LL+    +L       +I +  + ++      Q   +   +         L    
Sbjct: 266 AQREELLSRLAIALIIALLISSIIVYLFGRRLIINPFQKLEQSRTQL---AQQAELLMNK 322

Query: 316 DEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
           +         V        +    G + + N +F  +T +   + I I  G    L   K
Sbjct: 323 EREATRLANVVKHTRDAVLITDKQGRIEWVNQAFESMTGFHKDEIIGIKPGT---LLQGK 379

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
            S+  AI+ +     ++          +       +  +            E      +E
Sbjct: 380 GSNEKAIEKLRKAVKEQQPTRVEILNFSRTK---QAYWVDIEISPVFGANGELDKFIAVE 436

Query: 435 PEDVDTRINKRKME 448
            +   T+  +RK+E
Sbjct: 437 RDITATKKLQRKLE 450



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/139 (10%), Positives = 42/139 (30%), Gaps = 6/139 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTWYGK 146
            D  G ++ +++      G +  ++IG++   +      +      +   +K Q     +
Sbjct: 343 TDKQGRIEWVNQAFESMTGFHKDEIIGIKPGTLLQGKGSNEKAIEKLRKAVKEQQPTRVE 402

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
              +       +V I+++  P++  N E   F    +          +   +        
Sbjct: 403 ILNFSRTKQAYWVDIEIS--PVFGANGELDKF--IAVERDITATKKLQRKLENAVVAADS 458

Query: 207 LHEIKKGHSSVEKEKYDIF 225
            +  K    +    +    
Sbjct: 459 ANIAKTQFLATMSHEIRTP 477


>gi|56479140|ref|YP_160729.1| sensory transduction histidine kinase [Aromatoleum aromaticum EbN1]
 gi|56315183|emb|CAI09828.1| Sensory transduction histidine kinase [Aromatoleum aromaticum EbN1]
          Length = 491

 Score =  365 bits (936), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 107/484 (22%), Positives = 191/484 (39%), Gaps = 19/484 (3%)

Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
             +   G +   N     +  Y   + +         +        +  +          
Sbjct: 18  MMLDHAGKVLEWNDGAERMFGYSRSEAVG------ARIHELVTVPGSEAEQDHFIAETTE 71

Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
           C   +      + +      + ++                   +DV     +R  +    
Sbjct: 72  CGRGTFEALRRRNDG----TLIYVVISGKVGQGAGELYLLFSEKDVTQLKVQRDSKSLES 127

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
           +   +L++  DGI I+N  G IL  NR    LFGY  +++  +P    L Q   S    +
Sbjct: 128 KFRELLDSMPDGIVIVNPTGHILIANRQAEWLFGYDRDELRARPIEDLLPQRFRSAHKGH 187

Query: 513 LTEILSLDLRQTLEK--ITLGSTKEEKLLSLRIIIKKL--PFSSCYSLTMHDISEWKQEK 568
            +   S    + +       G  K+     + I +  L    +      + D+SE +  +
Sbjct: 188 RSHYFSTPRTRAMGAGLELYGLRKDGTEFPVEISLSPLKTEETPVVMSAIRDVSERRGFE 247

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
             L          +  K  FLA +SHE+RTPL A+IGF+  +  +  G L   +  +   
Sbjct: 248 QALQEKNLELLAANRAKDHFLASMSHELRTPLNAVIGFTGTLLMKLPGELNPEQTRQ-LE 306

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            +  +   +L ++NDLL+++KIE+GK+ L+FEP+     V E  + ++  A  K + +  
Sbjct: 307 IVRNNARHLLALINDLLNLAKIEAGKIELNFEPIDCGALVGEIAASLRPQALSKGLELIL 366

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EVILRVRDTG 745
           +  ++      D R++ QI +N++ NAI FT  G  + I            + L V DTG
Sbjct: 367 ATQSDPIVFETDRRALSQIIINLVGNAIKFTLHGS-VRIDLVLEEAGKKRRLALSVSDTG 425

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
            G+   EL    + F Q   S+    EGTGLGL L++ +     G+    ST   G++  
Sbjct: 426 PGIGEEELSSLFEAFVQGHASRMKGVEGTGLGLHLSRKLAVLLGGELSCTSTLGTGSVFT 485

Query: 806 IIFP 809
           +I P
Sbjct: 486 LILP 489



 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/106 (14%), Positives = 33/106 (31%), Gaps = 4/106 (3%)

Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
            D + +++  G +L  N    ++FGY   + +       +          +   I     
Sbjct: 14  PDALMMLDHAGKVLEWNDGAERMFGYSRSEAVGARIHELVTVPGSEAEQDHF--IAETTE 71

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM--HDISEWK 565
                   L    +  L+ + I  K    +    L     D+++ K
Sbjct: 72  CGRGTFEALRRRNDGTLIYVVISGKVGQGAGELYLLFSEKDVTQLK 117



 Score = 46.6 bits (109), Expect = 0.018,   Method: Composition-based stats.
 Identities = 49/412 (11%), Positives = 107/412 (25%), Gaps = 51/412 (12%)

Query: 68  LDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH- 126
           +  +  + +            +D  G + E ++   +  G    + +G R+ ++  +   
Sbjct: 1   MPDQVDYRWIADDPDALMM--LDHAGKVLEWNDGAERMFGYSRSEAVGARIHELVTVPGS 58

Query: 127 -IDPNNHIGDLLK-RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIV 184
             + ++ I +  +  + T+  +      +GT +YV        I  +  + +G       
Sbjct: 59  EAEQDHFIAETTECGRGTF--EALRRRNDGTLIYVV-------ISGKVGQGAGELYLLFS 109

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244
             +      +   K L+ KF  L +       +      I         L   ++     
Sbjct: 110 EKDVTQLKVQRDSKSLESKFRELLDSMPDGIVIVNPTGHILIANRQAEWLFGYDR----- 164

Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
                 D++       LL     S  +    H  +  +         L    K+  E+  
Sbjct: 165 ------DELRARPIEDLLPQRFRSAHKGHRSHYFSTPRTRAMGAGLELYGLRKDGTEF-- 216

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364
                      +E   +     D                    F    + K+++ +    
Sbjct: 217 PVEISLSPLKTEETPVVMSAIRD--------------VSERRGFEQALQEKNLELLAANR 262

Query: 365 GLSTLLDAPKLSDNNAIKPV------MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
                L +        +  V      +L +          R   I  N    L       
Sbjct: 263 AKDHFLASMSHELRTPLNAVIGFTGTLLMKLPGELNPEQTRQLEIVRNNARHLLALINDL 322

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ----LCSILEATSDGIA 466
               +      +   EP D    + +    +        L  IL   SD I 
Sbjct: 323 LNLAKIEAGKIELNFEPIDCGALVGEIAASLRPQALSKGLELILATQSDPIV 374


>gi|229032232|ref|ZP_04188205.1| hypothetical protein bcere0028_42740 [Bacillus cereus AH1271]
 gi|228729012|gb|EEL80015.1| hypothetical protein bcere0028_42740 [Bacillus cereus AH1271]
          Length = 558

 Score =  365 bits (936), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 91/388 (23%), Positives = 178/388 (45%), Gaps = 26/388 (6%)

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           +           +   + +  +E E    +L +++E    G+ +I+  G I   NR+  +
Sbjct: 187 DETGMLSKAINILARNLQEMTLEQEMQQDRLHTLIENMGSGMILIDSRGYINLVNRSYKE 246

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542
            F    E+ L + +           +   + EI   +++   + +  LG  ++   +   
Sbjct: 247 TFHVTDEEYLDRLYYESFHHT---EIIELVEEIFMTEVKVRKQMLLPLGIERKHFEVYGA 303

Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
            II          L  HDI+E K+ +                + DFLA VSHE++TP+T+
Sbjct: 304 PIIGTNHEWKGIVLVFHDITELKKLE--------------QMRKDFLANVSHELKTPITS 349

Query: 603 IIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           I GFSE + +   G + N ++ E + + I +    +  ++ DLLD+SKIE     L    
Sbjct: 350 IKGFSETLLD---GAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIEQQGFKLSMGT 406

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           V +   + +   ++     EK I ++ +    +  ++ D   +KQI +N+++NAI +TP+
Sbjct: 407 VDMKGLLEDIHMVLDNKTGEKEISLQVNALKGV-SVIGDPSRLKQIFINLINNAIVYTPA 465

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           GG + +           ++V DTG+G++  E+ +  + F ++  ++     GTGLGL + 
Sbjct: 466 GGVVSVELA-EDKYNAYIKVSDTGIGISKDEIPRIFERFYRVDKARSRNTGGTGLGLSIV 524

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           K +V+A+ G   + S   +GT   ++ P
Sbjct: 525 KHLVEAHHGTITVDSEVGEGTTFTVVLP 552


>gi|84624296|ref|YP_451668.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
 gi|84368236|dbj|BAE69394.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
          Length = 1364

 Score =  365 bits (936), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 125/707 (17%), Positives = 244/707 (34%), Gaps = 65/707 (9%)

Query: 164 AALPIYSRNREFSGFR-----GF----GIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214
           +  PI +      G+R     GF     I         P+               + +  
Sbjct: 185 SGEPIMTSPISLFGYRVPSESGFWLLLAIYREGMPLQTPQQRMVATSGWVYAPFSLAQIV 244

Query: 215 SSVEKEKYDI-FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE 273
            S   E+ DI               +  +     A +  V+        T   ++ P   
Sbjct: 245 QSALGERDDIALDMSDRNEPTHNLYRSGTPAIDSALRPPVVTLLPMYGRTWVITARPTAS 304

Query: 274 DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF 333
              ++N N            +    +   L   N         +   L            
Sbjct: 305 FIASLNQNSPWLIGGLVMAGSVLFAALLALYFSNGLRREEVLRKQMELAALVSHSSEAIV 364

Query: 334 FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393
                G +   NP+   +  Y + + I+    L+ LL     +                 
Sbjct: 365 AETPDGRITLWNPAAEAMFGYTAEEAIDQ--DLTMLLAPQAYAMPEIDHADA------AL 416

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK------- 446
            A ++   T+     + + +                 +    +  D   + ++       
Sbjct: 417 AANASAAQTMHHRDGHQVHVLASKSPIIESEGTLSGHSHFFRDISDRVRSHQRSIDLNAS 476

Query: 447 MEIEVMQ-----------LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
           +E +V +             +IL      I   +  G +   N A  K+ GY   +++ +
Sbjct: 477 LEHQVAERTGELVKFSVLQRAILAHAGYAIIATDSSGFVTLFNPAAEKMLGYNAAEVIGR 536

Query: 496 PFTVFLEQNTPSVMNH-YLTEILSLDLRQTLEK-------------ITLGSTKEEKLLSL 541
                  +          L +     +  TLE                   + + + L +
Sbjct: 537 RKASQFIEQDELQERARMLADQTGTPVAHTLEAIAALTSLGRSDTSEWTYVSHDGRRLPV 596

Query: 542 RIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
            + +  L         Y     D++E K  + +L  A   A+  +  KSDFLA +SHEIR
Sbjct: 597 LLTLSTLRDDHDQVIGYLGVAVDLTEQKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIR 656

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TP+ AI+G   +++             +    IDRS   +L+I+ND+LD SKIE+G+++L
Sbjct: 657 TPMNAILGMLYLLQRSELPGAA----QDMVAKIDRSARTLLEIINDILDFSKIEAGRIDL 712

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTS-FANNIPRILADLRSVKQIALNILSNAI 716
              P  L++       L++   + K + +       +   +L D   + Q+ +N++ NAI
Sbjct: 713 ECAPFDLNQLFDNIAELMRSSLSAKPVEMIVEPLPRDSRWLLGDALRINQVLVNLVGNAI 772

Query: 717 HFTPSGGQIIISTTHTSNEE-----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
            FT  G ++++S     + +     ++  VRDTG+G++  +      PF Q   S   R 
Sbjct: 773 KFTEQG-EVVLSVRRFPSGDPNKFKLLFSVRDTGIGISKEKQSLIFSPFLQADTSTSRRY 831

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
            G+GLGL +++ +++   G+  + S P +G+    +  L  ++ P +
Sbjct: 832 GGSGLGLTISRRLIELMGGELEVESVPGRGSEFYFVITLEKSAPPQE 878



 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/283 (8%), Positives = 65/283 (22%), Gaps = 23/283 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMR-LCDVSDILHIDPNNH---------IGDLLK 138
            D+ G++   +    K +G  A ++IG R      +   +              +   L+
Sbjct: 509 TDSSGFVTLFNPAAEKMLGYNAAEVIGRRKASQFIEQDELQERARMLADQTGTPVAHTLE 568

Query: 139 RQNTW----YGKTTLW-PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193
                       T+ W  +      +P+ L    +   + +  G+ G  +          
Sbjct: 569 AIAALTSLGRSDTSEWTYVSHDGRRLPVLLTLSTLRDDHDQVIGYLGVAV--DLTEQKLH 626

Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253
               +         ++ K    +    +              ++                
Sbjct: 627 EKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSELPGAAQDMVAKID 686

Query: 254 LKTEKYPLLTSEESSLPEQEDFH------TINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
                   + ++     + E           +LNQ           + S +  E +    
Sbjct: 687 RSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQLFDNIAELMRSSLSAKPVEMIVEPL 746

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLL 350
                    +   +    V+           G +  +   F  
Sbjct: 747 PRDSRWLLGDALRINQVLVNLVGNAIKFTEQGEVVLSVRRFPS 789



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 32/376 (8%), Positives = 79/376 (21%), Gaps = 14/376 (3%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI-LHIDPNNHIGDLLKRQNTWYGKTTL 149
             G +   +       G  A + I   L  +     +  P     D     N    +T  
Sbjct: 368 PDGRITLWNPAAEAMFGYTAEEAIDQDLTMLLAPQAYAMPEIDHADAALAANASAAQTMH 427

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
              +G  ++  +  +  PI       SG   F                  L+    H   
Sbjct: 428 -HRDGHQVH--VLASKSPIIESEGTLSGHSHF--FRDISDRVRSHQRSIDLNASLEHQVA 482

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
            + G               +    +   +        +    + +       +     + 
Sbjct: 483 ERTGELVKFSVLQRAILAHAGYAIIATDSS--GFVTLFNPAAEKMLGYNAAEVIGRRKAS 540

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
              E        +    Q    + +  +      S     +    +   +      +   
Sbjct: 541 QFIEQDELQERARMLADQTGTPVAHTLEAIAALTSLGRSDTSEWTYVSHDGRRLPVLLTL 600

Query: 330 PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389
                   H  +       + LT+ K  +        +        SD  A     +   
Sbjct: 601 ST--LRDDHDQVIGYLGVAVDLTEQKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIRTP 658

Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449
               +     L   +        +  I           +       +       +  +E 
Sbjct: 659 MNAILGMLYLLQRSELPGAAQDMVAKID----RSARTLLEIINDILDFSKIEAGRIDLEC 714

Query: 450 EVMQLCSILEATSDGI 465
               L  + +  ++ +
Sbjct: 715 APFDLNQLFDNIAELM 730


>gi|302342723|ref|YP_003807252.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM
           2075]
 gi|301639336|gb|ADK84658.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM
           2075]
          Length = 1336

 Score =  365 bits (936), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 128/832 (15%), Positives = 264/832 (31%), Gaps = 84/832 (10%)

Query: 52  SNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFT--------WNIDAHGYLKEISEELP 103
             F+D             ++         R  R+         W +D  G+    +  L 
Sbjct: 105 RPFSDGELRVALEMGLHQAQAESRLRESERRFRYVVEGVADGIWALDEFGFTSFGNARLR 164

Query: 104 KTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDL 163
           + +G    ++      ++ +         +   L R  +  G+            +   L
Sbjct: 165 QILGRGQQELTQKSAFELFEPATA---GVLRQNLARCRSGQGEPFELSFTTPQGRLVQAL 221

Query: 164 -AALPIYSRNREFSGF--------------RGF--------GIVHVNRVDNDPRAL---- 196
            +  P+  R     G               RG          +  +  V           
Sbjct: 222 FSPRPMLDRLGAPRGVILAITDVSALKRAQRGLEWQSRVDQALARIADVLLHSEVTFERI 281

Query: 197 -----------------------GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH 233
                                   +  +     + E+             +     P   
Sbjct: 282 TKVILDNARELTQSKLGYVGSIDPRTRELVNHTISEVMGDQCQASSRSGRVAFSPRPDGS 341

Query: 234 --------LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE-ESSLPEQEDFHTINLNQYT 284
                   L  K    +           L     PL       ++ +      I L    
Sbjct: 342 YPGLWGHCLNTKEAFFTERPADHPAAQGLPPGHLPLTRFLSAPAIIDDHLVGQIALANAG 401

Query: 285 KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFY 343
           +  +   L+  ++ +  Y              + E       D      +    G  + Y
Sbjct: 402 RPYHDDDLKAVTRIADLYALAIQRQEAMTALRDSERKYRLLADNSSDTIWTADLGLRIDY 461

Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403
            +P+   L  Y   + ++++        +           +    S      + A     
Sbjct: 462 ISPAVHDLLGYTPEEVLKLSVTDLISARSLIKIQQLLRDELAREASQPGSSPSHALELEH 521

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
                  + +              +   G   +    R  +  +     +   + ++  D
Sbjct: 522 TRKDGQIIVVEVSARFLRGPDGRPVGLLGSSRDVTQRRKAQDDLAESESRYRDLFDSIED 581

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH-YLTEILSLDLR 522
            +   + +G+++S N+A++   G P + I+      F  +      +  YL ++      
Sbjct: 582 FVYSHDEDGVLISANKALAAAVGRPRQRIIGHSIAEFTAERLRQNFHDIYLRQLRETGQH 641

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-YSLTMHDISEWKQEKNKLSHAKKIAEKE 581
           + L  +      + + +     + +       Y  + HD++E +    +L  AK+ AE  
Sbjct: 642 EGL-FVLTSQDGQARHVEYYTSMGRDRSGGIIYRGSAHDVTERRHLTRQLQRAKEEAEAA 700

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
           S  KSDFLA +SHEIRTP+ AIIG + +               E+   +  +   ++ ++
Sbjct: 701 SRAKSDFLANMSHEIRTPMNAIIGMTNLTLMTSLTR----EQTEFLGTVKSAAESLMQLL 756

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILAD 700
            D+LD+SKIE+ ++ L      L + +   +  + + A+ K + +    A   P R+  D
Sbjct: 757 GDILDLSKIEARQLALENVEFDLADLLEATLRDLAVRAHGKGLELIGRMAPGAPGRLRGD 816

Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDTGVGMTNYELEKA 756
              ++QI +N++ NAI FT  G Q+++     +      E+   V DTGVG+    + + 
Sbjct: 817 PLRLRQILVNLVGNAIKFTDHG-QVLVEARLEAMADNKLEMRFSVVDTGVGIEPENIGRV 875

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
              F Q  +S   R  GTGLG  ++K + +   G+ ++ STP +G+      
Sbjct: 876 FDRFTQADSSSTRRFGGTGLGAAISKELCELMGGRIWVESTPGRGSAFHFTI 927



 Score = 70.8 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/270 (11%), Positives = 77/270 (28%), Gaps = 15/270 (5%)

Query: 327 DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
           D+   P  +             L  +   ++  +        L+DA      + ++   L
Sbjct: 11  DQAHDPSLLARRLEALGYQGCCLATSGQMALGLLGQFDVDLALVDAALPGPLDGVETARL 70

Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED---VDTRIN 443
            R              + W  +  L                     +       +     
Sbjct: 71  LREAHALPVV-----FMAWPDDRGLLERAKHAGPFGYLLRPFSDGELRVALEMGLHQAQA 125

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
           + ++     +   ++E  +DGI  ++  G     N  + ++ G   +++ +K      E 
Sbjct: 126 ESRLRESERRFRYVVEGVADGIWALDEFGFTSFGNARLRQILGRGQQELTQKSAFELFEP 185

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK----KLPFSSCYSLTMH 559
            T  V+   L    S             +T + +L+      +    +L       L + 
Sbjct: 186 ATAGVLRQNLARCRSGQGEP---FELSFTTPQGRLVQALFSPRPMLDRLGAPRGVILAIT 242

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
           D+S  K+ +  L    ++ +  +      L
Sbjct: 243 DVSALKRAQRGLEWQSRVDQALARIADVLL 272


>gi|16330584|ref|NP_441312.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
 gi|1653075|dbj|BAA17992.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
          Length = 1261

 Score =  364 bits (935), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 111/491 (22%), Positives = 197/491 (40%), Gaps = 22/491 (4%)

Query: 322 TPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
             + ++  P    V    GN+  AN S   L  Y   + I  +  L  L +  + S +  
Sbjct: 272 YRQIIEYAPEGIMVLDAQGNIILANTSIEKLFGYSQTELIGQSIALLGLAELLQQSLHLL 331

Query: 381 IKPVMLYRSDRTCIAASARLHTI--QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
            +   +                I       +   +        +     M       +  
Sbjct: 332 QEGEDV----GPTCPLDQEEFEILGTRYDGSEFPIEVSLTSLPSLSQREMNIFASVRDIS 387

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
             +  ++++  +   L S+L++   G+AI    GI    N  + +L    V D  +K + 
Sbjct: 388 ARQEAQQQILRQREHLQSVLDSAPVGVAIT-VNGITQFANPHIGELVDLKVGDSPQKIYV 446

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM 558
                         L E+      Q+          E + +    +             +
Sbjct: 447 ------DLGDRQQMLEELTQFGRSQSRVYKMYNPRGEIRDILATFLATDYEGQKGILGWL 500

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            DI+  K  + ++  AK++AE+ S  K+DFLA +SHEIRTP+ A+IG + +       P 
Sbjct: 501 ADITPIKAAEAEMKRAKELAEEASRIKADFLANMSHEIRTPMNAVIGMTHLALKTDLTP- 559

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
              R  EY + I  SG  +L ++ND+LD SKIE+GK+ +      LD+ +    +L+   
Sbjct: 560 ---RQREYLHKIRFSGQHLLGVINDILDFSKIEAGKLPMESIDFDLDKVLDNVATLISEK 616

Query: 679 ANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEE 736
           A  K + +      N+PR  + D   + QI +N  +NA+ FT  G   I++      +++
Sbjct: 617 ATNKGLELLFDIDRNLPRHFIGDPLRLGQILINYANNAVKFTEQGDITIVVRLQEYRDQD 676

Query: 737 VIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
           V+L   V+DTG+G+    +      F Q  +S      GTGLGL + K + +   G+  +
Sbjct: 677 VVLYLAVKDTGIGIKPEHIANLFNSFQQADSSTTRNFGGTGLGLAICKRIAELMGGEVGV 736

Query: 795 FSTPAKGTLIE 805
            S   +G+   
Sbjct: 737 ESEYGQGSTFW 747



 Score = 88.9 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 59/157 (37%), Gaps = 7/157 (4%)

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
              +  E       ++ +         I+E   +GI +++ +G I+  N ++ KLFGY  
Sbjct: 248 MLFVLREISIQNQQQKILVATESWYRQIIEYAPEGIMVLDAQGNIILANTSIEKLFGYSQ 307

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL---EKITLGSTKEEKLLSLRIIIK 546
            +++ +   +           H L E   +     L   E   LG+  +     + + + 
Sbjct: 308 TELIGQSIALLGLAELLQQSLHLLQEGEDVGPTCPLDQEEFEILGTRYDGSEFPIEVSLT 367

Query: 547 KLPF----SSCYSLTMHDISEWKQEKNKLSHAKKIAE 579
            LP           ++ DIS  ++ + ++   ++  +
Sbjct: 368 SLPSLSQREMNIFASVRDISARQEAQQQILRQREHLQ 404



 Score = 45.0 bits (105), Expect = 0.046,   Method: Composition-based stats.
 Identities = 25/286 (8%), Positives = 68/286 (23%), Gaps = 17/286 (5%)

Query: 175 FSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP---- 230
            +G     ++    + N  + +    +  +  + E       V   + +I    +     
Sbjct: 243 LTGGVMLFVLREISIQNQQQKILVATESWYRQIIEYAPEGIMVLDAQGNIILANTSIEKL 302

Query: 231 -----PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTK 285
                   +     +  L E       +L+  +    T        +      + +++  
Sbjct: 303 FGYSQTELIGQSIALLGLAELLQQSLHLLQEGEDVGPTCPLDQEEFEILGTRYDGSEFPI 362

Query: 286 KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG----ENLTPETVDKCPIPFFVYSHGNL 341
           +    +L + S+      +     S      +            +D  P+   +  +G  
Sbjct: 363 EVSLTSLPSLSQREMNIFASVRDISARQEAQQQILRQREHLQSVLDSAPVGVAITVNGIT 422

Query: 342 FYANPSFLLL----TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397
            +ANP    L                G    +L+       +  +   +Y          
Sbjct: 423 QFANPHIGELVDLKVGDSPQKIYVDLGDRQQMLEELTQFGRSQSRVYKMYNPRGEIRDIL 482

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
           A      +  +  +                M +     E+      
Sbjct: 483 ATFLATDYEGQKGILGWLADITPIKAAEAEMKRAKELAEEASRIKA 528



 Score = 45.0 bits (105), Expect = 0.048,   Method: Composition-based stats.
 Identities = 27/245 (11%), Positives = 65/245 (26%), Gaps = 15/245 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNT------ 142
           +DA G +   +  + K  G    ++IG  +  +     +  + H+    +          
Sbjct: 286 LDAQGNIILANTSIEKLFGYSQTELIGQSIALLGLAELLQQSLHLLQEGEDVGPTCPLDQ 345

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
              +      +G+   + + L +LP  S  RE      F  V       + +    R  +
Sbjct: 346 EEFEILGTRYDGSEFPIEVSLTSLPSLS-QRE---MNIFASVRDISARQEAQQQILRQRE 401

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
               + +      ++       F+    P    + +     +    + D   + +    L
Sbjct: 402 HLQSVLDSAPVGVAITVNGITQFAN---PHIGELVDLKVGDSPQKIYVDLGDRQQMLEEL 458

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
           T    S       +               L  + +     L      +     +      
Sbjct: 459 TQFGRSQSRVYKMYNPRGEIR--DILATFLATDYEGQKGILGWLADITPIKAAEAEMKRA 516

Query: 323 PETVD 327
            E  +
Sbjct: 517 KELAE 521


>gi|291568868|dbj|BAI91140.1| multi-sensor signal transduction histidine kinase [Arthrospira
           platensis NIES-39]
          Length = 856

 Score =  364 bits (935), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 106/587 (18%), Positives = 204/587 (34%), Gaps = 41/587 (6%)

Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
            +   +                       +N N          L       F   +    
Sbjct: 275 QRGTAIAHLLTATFAVWGVLRGSGPFMDNLNENPQVFSLQAFILVMTITGLFLAGAVEER 334

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY-ANPSFLLLTKYKSVDDIEIAGGLS 367
            ++ A    GE           +  +      L    +     +                
Sbjct: 335 QTVEASLRSGEASLATAQRIAKLGHWELDIRRLTCSWSDQLYRIFGVNPDQVTPSIDS-- 392

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
                     +       + ++    I  S      + + +    +              
Sbjct: 393 --FMQYIHPLDRLRVETAISQAISEQIPYSIDYRIARPDGQERFVV-------EQAIVTT 443

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLFG 486
                   +  + +  +  +     +   + +A+  GI I    EG  +  N +  +  G
Sbjct: 444 THITSTVQDITERKRAEIALRASEERFSRVFKASPIGIIITTAQEGRFVDVNDSFLRQLG 503

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
           +  E ++ + F    +   P  +N     + + D    L       +   +   + I   
Sbjct: 504 WSREQVIDRTFEDL-QMWDPDQINPIFKRLTNGDRLSNLTVEVRHKSGAIRDWLIAIEPI 562

Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
           +L  + C      DI+E KQ + +L  AK+ AE+ +  KS FLA +SHE+RTPL AI+G+
Sbjct: 563 QLENTPCLLTLASDITEHKQAE-ELRRAKEAAEQANQAKSLFLANMSHELRTPLNAILGY 621

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
           SE +  +    +G   ++     I  +G  +L +++D++D SKIE+G++N H E   ++ 
Sbjct: 622 SE-LLQEDAQDIGQDDFVADLKNIHVAGQHLLTLISDIIDFSKIEAGRINFHLEKCQINT 680

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726
            + E  + +   A +    +    A  +  +  D+  V+Q  LN+LSNA  FT  G Q+I
Sbjct: 681 LLWEVETTIAPLAEKNHNQLTLEVAPGLDLMYTDVTKVRQSLLNLLSNACKFTEQG-QVI 739

Query: 727 IST------------------------THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
           +                          T +    +  +V+DTG+GM   ++     PF Q
Sbjct: 740 LRVWQQLIPATDLPDLPIYHSPESPSETLSEISFIFWQVQDTGIGMNERQIATVFSPFTQ 799

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
              S   +  GTGLGL +   +     G  ++ S   +G+ + +  P
Sbjct: 800 ADESTTRKYGGTGLGLSITHKLCQMMGGDLWVESQLNQGSTLTMRLP 846



 Score = 57.7 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 33/306 (10%), Positives = 69/306 (22%), Gaps = 26/306 (8%)

Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH-------EIKKGHSSVEKEKYDIFS 226
             +G    G V   +        G+        +        +I++   S   + Y IF 
Sbjct: 321 TITGLFLAGAVEERQTVEASLRSGEASLATAQRIAKLGHWELDIRRLTCSWSDQLYRIFG 380

Query: 227 QQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKK 286
                   ++   + S  +Y    D +          SE+            +  +    
Sbjct: 381 VNP----DQVTPSIDSFMQYIHPLDRLRVETAISQAISEQIPYSIDYRIARPDGQERFVV 436

Query: 287 QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH--GNLFYA 344
           +    +   +  +                   E          PI   + +   G     
Sbjct: 437 EQ--AIVTTTHITSTVQDITERKRAEIALRASEERFSRVFKASPIGIIITTAQEGRFVDV 494

Query: 345 NPSFLLLTKYKSVDDIEI---------AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIA 395
           N SFL    +     I+             ++ +       D  +   V +         
Sbjct: 495 NDSFLRQLGWSREQVIDRTFEDLQMWDPDQINPIFKRLTNGDRLSNLTVEVRHKSGAIRD 554

Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
               +  IQ      L        +  Q  E         +    +     +     +L 
Sbjct: 555 WLIAIEPIQLENTPCLLTLASDITEHKQAEELRRAKEAAEQANQAKS--LFLANMSHELR 612

Query: 456 SILEAT 461
           + L A 
Sbjct: 613 TPLNAI 618



 Score = 45.0 bits (105), Expect = 0.052,   Method: Composition-based stats.
 Identities = 16/139 (11%), Positives = 35/139 (25%), Gaps = 8/139 (5%)

Query: 69  DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID 128
            SE  F        +         G   ++++   + +G    ++I     D+      D
Sbjct: 465 ASEERFSRVFKASPIGIIITTAQEGRFVDVNDSFLRQLGWSREQVIDRTFEDLQM-WDPD 523

Query: 129 PNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVH-VN 187
             N I   L   +     T     +   +   + +A  PI     +         +    
Sbjct: 524 QINPIFKRLTNGDRLSNLTVEVRHKSGAIRDWL-IAIEPI-----QLENTPCLLTLASDI 577

Query: 188 RVDNDPRALGKRLDKKFSH 206
                   L +  +     
Sbjct: 578 TEHKQAEELRRAKEAAEQA 596


>gi|312880876|ref|ZP_07740676.1| multi-sensor hybrid histidine kinase [Aminomonas paucivorans DSM
            12260]
 gi|310784167|gb|EFQ24565.1| multi-sensor hybrid histidine kinase [Aminomonas paucivorans DSM
            12260]
          Length = 1513

 Score =  364 bits (935), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 122/729 (16%), Positives = 242/729 (33%), Gaps = 59/729 (8%)

Query: 104  KTIGNYAFKMIGMR--LCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPI 161
              +G         R  L + +        + +    +R N   G     P+       P 
Sbjct: 392  AVLGFDVGSETRRRSALEEAARTGFATITDPLTPANERGNPSVGF-LYLPVSAPGAPDPA 450

Query: 162  DLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEK 221
              AA          +  RGFG     R        GK      + + + +        E 
Sbjct: 451  GYAAAWFRYEALLRTVLRGFGGGSWVRWTLLQLREGKEPLLLAASVPQGRSRPLPPSWEA 510

Query: 222  YDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLN 281
            Y I         +       +    +             L      +L        +   
Sbjct: 511  YQIPLFAFGKTFVLRPAPGEAFWGQHLSW-----VRWLVLGAGLLITLAGAVFAGYLANR 565

Query: 282  QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY---SH 338
            +    +  GT     +   E +                    +     P+  F++     
Sbjct: 566  RLLLAREVGTRTEELRRVLETI----------------RRERDLFSGGPVVVFLWGTDET 609

Query: 339  GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398
            G + Y + +   +  Y   +++   G L   L  P+  D    +        R+    S 
Sbjct: 610  GTVEYVSGNVEAVWGYTP-EEMTRKGFLFMELVHPEDRDRVVREIRDHADQGRSHFEQSY 668

Query: 399  RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458
            RL   +        +      + ++  E     G   +    +  ++ +     +L    
Sbjct: 669  RL---RRRDGEYRWVADFTVLEKDEAGEVERLRGYLVDQTVLKEAEKALRATGEELDRYF 725

Query: 459  EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
              + D + I   EG  +  N   +++ GY + ++  + F   +           L  +  
Sbjct: 726  TLSLDLLCIATTEGRFVRLNPEWTRVLGYAMGELEGRSFLDLVHPEDLPATLEALGRL-- 783

Query: 519  LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKK-- 576
                + L+ +     K+     +    +     +       DIS+  + + +L  A +  
Sbjct: 784  GGQEEVLDFVNRYRCKDGTYRWIEWRSRPF--GTLIYAVARDISDRVETEARLQEANRRL 841

Query: 577  ------------IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
                         A++ +  KSDFLA +SHEIRTP+  I+G + ++ +    P       
Sbjct: 842  EEQTALARSMALQADQANRAKSDFLANMSHEIRTPMNGILGMAALLLDTDLTP----EQR 897

Query: 625  EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
             +   +  S   +L ++ND+LD+SKIE+G++ L      L     +  + +   A  K +
Sbjct: 898  HFGEIVQASAENLLGLLNDILDLSKIEAGRLALEEVDFDLRSLFDDVGAALAAQAQAKGL 957

Query: 685  LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT----SNEEVIL 739
                S   ++P  +  D   ++Q+  N+L NA+ FT  G ++++            +V  
Sbjct: 958  EFLGSVEPDVPSALRGDPGRLRQVLTNLLGNAVKFTHRG-EVVVRARRVSESPERVQVRF 1016

Query: 740  RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
             VRDTG+G+   +++   + F Q   S      GTGLGL ++K +V+   G+  + S   
Sbjct: 1017 SVRDTGIGIPADKVDLLFQKFTQADASTTRHYGGTGLGLAISKNLVELMGGEIGVHSREG 1076

Query: 800  KGTLIEIIF 808
             G+      
Sbjct: 1077 VGSEFWFTL 1085


>gi|262171619|ref|ZP_06039297.1| hypothetical protein VII_002442 [Vibrio mimicus MB-451]
 gi|261892695|gb|EEY38681.1| hypothetical protein VII_002442 [Vibrio mimicus MB-451]
          Length = 1325

 Score =  364 bits (935), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 102/375 (27%), Positives = 174/375 (46%), Gaps = 12/375 (3%)

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
            R+ +RK+  +      IL+AT + +  ++  G  L+ N    +L G    D++ KP   
Sbjct: 460 QRLAERKVLEQSQLNQEILDATPNPMYCLSANGTFLTVNAKFLELMGLYNNDVIGKPPQE 519

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLT 557
               +           +      Q  E   +     ++ + +            +     
Sbjct: 520 IFPSSVAERFAQAHQILTQQQSSQNYEISLIDYAGVQREMLVYEASFSDRADKVNGIVGI 579

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
           + D++E K+ + +L  AK  A+  S  K DFLA +SHEIRTP+ AI+G + +  N +   
Sbjct: 580 LLDMTERKEMEQELREAKDAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTQL-- 637

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
             +    +Y   I+ S   +L I+ND+LD SKIE+GK+N+     SLD+ +    +++ L
Sbjct: 638 --DATQRKYVTRINESAKNLLGIINDILDFSKIEAGKLNVERIDFSLDDVLDNVTAVISL 695

Query: 678 YANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
            A EK I        +IP  ++ D   + Q+ +N+  NA+ FT  G +I+IS       E
Sbjct: 696 KAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTQQG-EIVISARVRQLNE 754

Query: 737 ----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
               ++  V+DTG+G+   +L      F Q  NS   +  GTGLGL ++K +V+   G+ 
Sbjct: 755 QQVMLLFAVKDTGIGIAQEKLNDLFNAFSQADNSITRQYGGTGLGLSISKQLVELMGGQI 814

Query: 793 YIFSTPAKGTLIEII 807
            + S   KG+  E  
Sbjct: 815 SVHSEEGKGSTFEFS 829



 Score = 45.4 bits (106), Expect = 0.037,   Method: Composition-based stats.
 Identities = 28/263 (10%), Positives = 63/263 (23%), Gaps = 33/263 (12%)

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
           L      +   E      L+          L + S       +            E   L
Sbjct: 414 LQVNHQPIGLLELGTVGMLSMQQYHWLSQMLDDLSVAIQLTQNAELQRLAERKVLEQSQL 473

Query: 322 TPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
             E +D  P P   + ++G     N  FL L    + D I               S    
Sbjct: 474 NQEILDATPNPMYCLSANGTFLTVNAKFLELMGLYNNDVIGKPP------QEIFPSSVAE 527

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
                     +   + +  +  I +       + +      ++  +     GI  +  + 
Sbjct: 528 RFAQAHQILTQQQSSQNYEISLIDYAGVQREMLVYEASFS-DRADKVNGIVGILLDMTER 586

Query: 441 RINKRKMEIEVMQLCSI-------LEATS-------DGIAI---------INREGI--IL 475
           +  ++++        ++       L   S       + I           ++      + 
Sbjct: 587 KEMEQELREAKDAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTQLDATQRKYVT 646

Query: 476 STNRAVSKLFGYPVEDILRKPFT 498
             N +   L G   + +      
Sbjct: 647 RINESAKNLLGIINDILDFSKIE 669



 Score = 45.4 bits (106), Expect = 0.040,   Method: Composition-based stats.
 Identities = 16/144 (11%), Positives = 47/144 (32%), Gaps = 5/144 (3%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL-KRQNTWY 144
            + + A+G    ++ +  + +G Y   +IG    ++      +       +L ++Q++  
Sbjct: 485 MYCLSANGTFLTVNAKFLELMGLYNNDVIGKPPQEIFPSSVAERFAQAHQILTQQQSSQN 544

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            + +L    G    + +  A+     R  + +G    GI+       +     +      
Sbjct: 545 YEISLIDYAGVQREMLVYEAS--FSDRADKVNGI--VGILLDMTERKEMEQELREAKDAA 600

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQ 228
             + + K    +    +       
Sbjct: 601 DAMSQAKGDFLANMSHEIRTPMNA 624


>gi|254411776|ref|ZP_05025552.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196181498|gb|EDX76486.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 968

 Score =  364 bits (935), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 105/610 (17%), Positives = 225/610 (36%), Gaps = 21/610 (3%)

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
            E ++   +   E     + +     L     V ++      K    +  +  LL +E  
Sbjct: 368 AETQQQLQTAIAEAATGKTIRYEADILAPDQSVITIDFSL--KPLRKENGEIELLIAEGR 425

Query: 268 SLPEQEDFHTINLNQYTK-KQYFGTLQNNSKESFEYLSHR--NHPSLSAYFDEGENLTPE 324
            + +++           + +Q      +  K++   L      H    A     E     
Sbjct: 426 DISDRKQAEAKLQTAMVELEQRVEERTHELKQTNAQLQAEILQHQQTEAELRNSEQQFRR 485

Query: 325 TVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK- 382
             D+ PI   +   +      N +F  +  Y   + + ++             D  A++ 
Sbjct: 486 VFDEAPIGMTLADLNDRYIRVNRAFYSMLGYSQSEVMALS------FKDITHPDELALEI 539

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
           P M         +       I    ++ + +        ++  E +    +  +  + + 
Sbjct: 540 PYMQQLIKGEIDSFQLEKRYI-KKNKDLVWVNLTLIALRDKKGEVLYTLAMVEDITERKQ 598

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
               +     +  +I+E  ++ I     +G     N A  + F     +++   F   + 
Sbjct: 599 AMEALRQSEARYRAIVEDQTELICRFKTDGTFTFVNDAYCRYFNKQRSELIGYRFKPQIP 658

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHD 560
           +     +N     +       T E   +    E +       +      +   +     D
Sbjct: 659 EIDQEFVNQQFKTLSVEKPIVTYEHRVILPDNEIRWQQWTERVMFDNEVNIVEFQGVGRD 718

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I+  K+ + ++  A +   + S  +S F++ VSHE RTPLTAI+  SE + ++    L +
Sbjct: 719 ITPLKKAEAEIIKALEKERELSELRSSFVSLVSHEFRTPLTAILSSSE-LLDRYSKKLTD 777

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
            +   +   I  + + +  +++D+L I K E+GK+      ++L     + +  +Q+  +
Sbjct: 778 EKKKAHHQRIQIAVSRMTQLLDDVLTIGKAEAGKLTFKPASMNLIAFCQDIVDTLQMSIS 837

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
           ++   I      +      D + ++ I  N++SNAI ++  G ++ +  T    E  I  
Sbjct: 838 QQH-SINFVCHGDCGDAQMDEKLLQHILNNLISNAIKYSSQGSEVKVELTCE-GESAIFH 895

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           ++D G+G+   +++K    F +  N      +GTGLGL + K  VD + G   + S   K
Sbjct: 896 IQDQGIGIPPEDIKKLFSSFQRAGNVGT--IQGTGLGLAIVKKCVDLHGGLITVESEVGK 953

Query: 801 GTLIEIIFPL 810
           GT   II PL
Sbjct: 954 GTTFTIILPL 963



 Score =  119 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 58/639 (9%), Positives = 152/639 (23%), Gaps = 129/639 (20%)

Query: 59  QESVSNTNYLDSENTFVFDPIPRTVRF------TWNIDAHGYLKEISEELPKTIGNYAFK 112
            ++ S +     +           +R        W  +  GY + ++    K +G    +
Sbjct: 4   FQTPSESM---DQPANREFTQTLFLRISDDLFGIW--NKEGYWQPLNPAWEKVLGWTEEE 58

Query: 113 MIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172
           +      ++      D +  I      +     +  L   +G+  Y  +    +P+    
Sbjct: 59  LRSHTSWELIHPD--DRDRTIAHFTSTEA-VECEHRLRHQDGS--YRWLAWKLIPVEDG- 112

Query: 173 REFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDI-------- 224
                 R +G+           A  K   +    +  +      +  +  +         
Sbjct: 113 ------RLYGVGKNITETKHTEAKLKERIEFEQLITSLSHQFIQLSSDGIEHAIKHTLEK 166

Query: 225 ------------------------FSQQSPPPHLRMKNKVSSLTEYYAHKD--------- 251
                                     +   P    ++ +                     
Sbjct: 167 IGKFCECDRTYMALFSEDTATASMIQEWDAPGVSSIQPQWQDFPTASYPWGMAKLRNLET 226

Query: 252 ----------DVLKTEKYPLLTSEESSLPEQEDFHT-----------INLNQYTKKQYFG 290
                         + K  L  +   S+                   +N  +        
Sbjct: 227 IQISRRSDLPPEANSLKQALELTGAKSIAIVPIAQGNHLIGYLGCSTVNAEKIWSDDILS 286

Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK-CPIPFFVYSHGNLFYANPSFL 349
            LQ         LS        +   E E       ++   +   +   GN+   N +  
Sbjct: 287 LLQIIGGIFANALS---RQQAESQLRESERRFRAVFNQTFQLSSLLTLEGNVVADNQTAT 343

Query: 350 LLTKYKSVDDIEIAGGLSTLL-------------DAPKLSDNNAIKPVMLYRSDRTCIAA 396
              +  S   I                        A   +         +   D++ I  
Sbjct: 344 DFCQLDSFQVIGYPFWQLKCWTISAETQQQLQTAIAEAATGKTIRYEADILAPDQSVITI 403

Query: 397 SARLHTIQWNRENSLAMTF--IPFEKANQFPENMPQNGIE-------------------- 434
              L  ++        +           Q    +    +E                    
Sbjct: 404 DFSLKPLRKENGEIELLIAEGRDISDRKQAEAKLQTAMVELEQRVEERTHELKQTNAQLQ 463

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
            E +  +  + ++     Q   + +    G+ + +     +  NRA   + GY   +++ 
Sbjct: 464 AEILQHQQTEAELRNSEQQFRRVFDEAPIGMTLADLNDRYIRVNRAFYSMLGYSQSEVMA 523

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554
             F      +  ++   Y+ +++  ++    +       K + L+ + + +  L      
Sbjct: 524 LSFKDITHPDELALEIPYMQQLIKGEIDS-FQLEKRYIKKNKDLVWVNLTLIALRDKKGE 582

Query: 555 S----LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
                  + DI+E KQ    L  ++         +++ +
Sbjct: 583 VLYTLAMVEDITERKQAMEALRQSEARYRAIVEDQTELI 621



 Score = 76.2 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/200 (13%), Positives = 71/200 (35%), Gaps = 14/200 (7%)

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
           GI    +  +  + ++     +  ++   T    +++  EG +++ N+  +         
Sbjct: 293 GIFANALSRQQAESQLRESERRFRAVFNQTFQLSSLLTLEGNVVADNQTATDFCQLDSFQ 352

Query: 492 ILRKPFTVFLEQNTPSVMNHYLT-EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
           ++  PF         +     L   I      +T+         ++ ++++   +K L  
Sbjct: 353 VIGYPFWQLKCWTISAETQQQLQTAIAEAATGKTIRYEADILAPDQSVITIDFSLKPLRK 412

Query: 551 SSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
            +           DIS+ KQ + KL  A    E+    ++       HE++   T     
Sbjct: 413 ENGEIELLIAEGRDISDRKQAEAKLQTAMVELEQRVEERT-------HELKQ--TNAQLQ 463

Query: 607 SEVIKNQRFGPLGNPRYIEY 626
           +E++++Q+          ++
Sbjct: 464 AEILQHQQTEAELRNSEQQF 483



 Score = 74.3 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 22/275 (8%), Positives = 69/275 (25%), Gaps = 7/275 (2%)

Query: 48  SFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIG 107
                   +  Q   +     +SE  F        +  T   D +     ++      +G
Sbjct: 457 QTNAQLQAEILQHQQTEAELRNSEQQFRRVFDEAPIGMTL-ADLNDRYIRVNRAFYSMLG 515

Query: 108 NYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALP 167
               +++ +   D++    +         L +      +     I+     V ++L  + 
Sbjct: 516 YSQSEVMALSFKDITHPDELALEIPYMQQLIKGEIDSFQLEKRYIKKNKDLVWVNLTLIA 575

Query: 168 IYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ 227
           +  +  E        +V             ++ + ++  + E +       K        
Sbjct: 576 LRDKKGEV--LYTLAMVEDITERKQAMEALRQSEARYRAIVEDQTELICRFKTDGTFTFV 633

Query: 228 QSP----PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY 283
                      R +             D     +++  L+ E+  +  +      +    
Sbjct: 634 NDAYCRYFNKQRSELIGYRFKPQIPEIDQEFVNQQFKTLSVEKPIVTYEHRVILPDNEIR 693

Query: 284 TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
            ++     + +N     E+       +     +  
Sbjct: 694 WQQWTERVMFDNEVNIVEFQGVGRDITPLKKAEAE 728



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 52/156 (33%), Gaps = 11/156 (7%)

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
           L  + D   I N+EG     N A  K+ G+  E++        +  +       + T   
Sbjct: 25  LRISDDLFGIWNKEGYWQPLNPAWEKVLGWTEEELRSHTSWELIHPDDRDRTIAHFTSTE 84

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI 577
           +      +E       ++     L   +  +     Y     +I+E K  + KL    + 
Sbjct: 85  A------VECEHRLRHQDGSYRWLAWKLIPVEDGRLY-GVGKNITETKHTEAKLKERIEF 137

Query: 578 AEKESSHKSDFL----ARVSHEIRTPLTAIIGFSEV 609
            +  +S    F+      + H I+  L  I  F E 
Sbjct: 138 EQLITSLSHQFIQLSSDGIEHAIKHTLEKIGKFCEC 173


>gi|283851409|ref|ZP_06368690.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283573147|gb|EFC21126.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 837

 Score =  364 bits (935), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 109/643 (16%), Positives = 215/643 (33%), Gaps = 36/643 (5%)

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF---SQQSPPPHLRMKNKVS 241
              R         +  + ++  L         +  +    F           L     V 
Sbjct: 61  RQARQRERQDRALRESESRYRSLFMGSLDALVLASDDGRCFCANPAAEALFGLTEAEIVQ 120

Query: 242 SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES-- 299
           +        DD      +    +   +  E   F       +  +      ++   +   
Sbjct: 121 AGRAGLFDPDDPRLPRLWQSRAATGQARGEV-RFRRKTGELFEAEVSVSACEDFHGQPCF 179

Query: 300 -FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSV 357
                             +        ++       ++S    +  AN  F  +  Y   
Sbjct: 180 CLALRDISARKHTEEALQKEIQRRRALMEVSNDGIAIFSQDHRILEANRRFAAMLGYPPE 239

Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
                     T L +           +     D T I  +      + +           
Sbjct: 240 AM--------TSLSSWDFEAALTEDQIRSAFRDFTHINQTFETRHRRRDG---TVYDAEV 288

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT-SDGIAIINREGIILS 476
                +  +      I  +  D +  + ++     +  S+ +   +  +   +R+  +L 
Sbjct: 289 SASGARIGDERLIITICRDITDRKRTEERLRQSEERFRSLFDNVETVAVQGYDRDRNVLY 348

Query: 477 TNRAVSKLFGYPVEDILRKPFTVFL-EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
            N A   L+GY  E+ L +     +        +   +   +              S ++
Sbjct: 349 WNPASEALYGYSREEALGQKLETLIIPPAMRPYVVEDIRRWIEEGRPIPAG-ELRLSRQD 407

Query: 536 EKLLSLRIIIKKLPFSSCYSLTM---HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
              + +          S          D++E +  + +L  +K  A   +  K++FLA +
Sbjct: 408 GSEVPVFSSHVLQQTGSGDCELFCLDIDLTETEAMRKELIASKDAAVAANRAKTEFLANM 467

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHEIRTPL  I G  +++         +    EY     +S   +  +++D+LD+SKIE+
Sbjct: 468 SHEIRTPLNGIYGMLQLLATTS----PDDEQQEYVTAALKSAKRLSSLLSDILDLSKIEA 523

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNI 711
            K+++  +     E V     +  L A EK + I+ S  + IP  ++ D   V+QI  N+
Sbjct: 524 NKLDICRKAFPFQELVQSLKDIFVLSAREKALRIKFSVEDGIPGHLVGDEIRVRQILFNL 583

Query: 712 LSNAIHFTPSGGQIIISTTH---TSNEEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNS 766
           + NAI FT +GG + +       +++  V +   V+DTG+G+   ++    +PF Q   S
Sbjct: 584 IGNAIKFTETGG-VAVKACLLPESADGRVRILFSVKDTGIGIREDKVHYVFEPFAQADGS 642

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
                +G GLGL + K +V+   G   I S    GT I +  P
Sbjct: 643 YIREQQGAGLGLTIVKRVVEMLDGILCIDSKFGSGTTISVALP 685



 Score = 91.2 bits (225), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 34/381 (8%), Positives = 94/381 (24%), Gaps = 26/381 (6%)

Query: 85  FTWNIDA------HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK 138
           F  ++DA       G     +       G    +++      + D         +     
Sbjct: 84  FMGSLDALVLASDDGRCFCANPAAEALFGLTEAEIVQAGRAGLFDPDDP-RLPRLWQSRA 142

Query: 139 RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI-VHVNRVDNDPRALG 197
                 G+       G      + ++A        +F G   F + +             
Sbjct: 143 ATGQARGEVRFRRKTGELFEAEVSVSAC------EDFHGQPCFCLALRDISARKHTEEAL 196

Query: 198 KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSSLT--EYYAHKDDV 253
           ++  ++   L E+     ++  + + I                 ++SL+  ++ A   + 
Sbjct: 197 QKEIQRRRALMEVSNDGIAIFSQDHRILEANRRFAAMLGYPPEAMTSLSSWDFEAALTED 256

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
                +   T    +   +       +           + +            +      
Sbjct: 257 QIRSAFRDFTHINQTFETRHRRRDGTVYDAEVSASGARIGDERLIITICRDITDRKRTEE 316

Query: 314 YFDEGENLTPETVDKC-PIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
              + E       D    +    Y     + Y NP+   L  Y   + +     L TL+ 
Sbjct: 317 RLRQSEERFRSLFDNVETVAVQGYDRDRNVLYWNPASEALYGYSREEALGQK--LETLII 374

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
            P +          + R         A    +     + + +      +     +     
Sbjct: 375 PPAMRPYVVED---IRRWIEEGRPIPAGELRLSRQDGSEVPVFSSHVLQQTGSGD-CELF 430

Query: 432 GIEPEDVDTRINKRKMEIEVM 452
            ++ +  +T   ++++     
Sbjct: 431 CLDIDLTETEAMRKELIASKD 451



 Score = 62.7 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/302 (9%), Positives = 74/302 (24%), Gaps = 23/302 (7%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK--RQNTWYGKTTL 149
              + E +      +G     M  +   D    L     + I    +         +T  
Sbjct: 220 DHRILEANRRFAAMLGYPPEAMTSLSSWDFEAALT---EDQIRSAFRDFTHINQTFETRH 276

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
              +GT     +  +   I       +      I              ++ +++F  L +
Sbjct: 277 RRRDGTVYDAEVSASGARIGDERLIIT------ICRDITDRKRTEERLRQSEERFRSLFD 330

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
             +  +    ++       +P                   ++ + +  +  ++       
Sbjct: 331 NVETVAVQGYDRDRNVLYWNPASEALYGYS---------REEALGQKLETLIIPPAMRPY 381

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
             ++    I   +          + +  E   + SH    + S   +        T  + 
Sbjct: 382 VVEDIRRWIEEGRPIPAGELRLSRQDGSEVPVFSSHVLQQTGSGDCELFCLDIDLTETEA 441

Query: 330 PIPFFVYSHGNLFYANPS---FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
                + S      AN +   FL    ++    +    G+  LL      D         
Sbjct: 442 MRKELIASKDAAVAANRAKTEFLANMSHEIRTPLNGIYGMLQLLATTSPDDEQQEYVTAA 501

Query: 387 YR 388
            +
Sbjct: 502 LK 503



 Score = 38.1 bits (87), Expect = 7.0,   Method: Composition-based stats.
 Identities = 14/139 (10%), Positives = 36/139 (25%), Gaps = 8/139 (5%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNT-WYGK 146
           D    +   +       G    + +G +L  +     + P     I   ++       G+
Sbjct: 341 DRDRNVLYWNPASEALYGYSREEALGQKLETLIIPPAMRPYVVEDIRRWIEEGRPIPAGE 400

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
             L   +G+   VP+  + +   + + +      F +          R            
Sbjct: 401 LRLSRQDGS--EVPVFSSHVLQQTGSGDCE---LFCLDIDLTETEAMRKELIASKDAAVA 455

Query: 207 LHEIKKGHSSVEKEKYDIF 225
            +  K    +    +    
Sbjct: 456 ANRAKTEFLANMSHEIRTP 474


>gi|108757295|ref|YP_630537.1| sensory box histidine kinase/response regulator [Myxococcus xanthus
           DK 1622]
 gi|108461175|gb|ABF86360.1| sensory box histidine kinase/response regulator [Myxococcus xanthus
           DK 1622]
          Length = 944

 Score =  364 bits (935), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 110/510 (21%), Positives = 204/510 (40%), Gaps = 39/510 (7%)

Query: 313 AYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
              D   +      +       V   G  +   N +   +   ++   +    GL  LL 
Sbjct: 15  RVADLASSAHAAIFEHSRDGVLVLDAGQRIVEVNRAAERIFGPRTR-LVGQPVGL--LLP 71

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
             +  +  A     L  ++                  +  A              +    
Sbjct: 72  GWRPPEPRAPADAALRETE----------LAGHRPGGSGPAHYLRVVTLPLPGEGDGGWV 121

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
               +       +  +  +     +++  +   I  I R+  +LS N   ++LFGY   +
Sbjct: 122 LQLHDMTARLEVEASLRQQKEFFEAVVINSPVAIITITRQFRVLSWNPEATRLFGYSPAE 181

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
            L K     +    P+V+         +  R  L  +T    K+  ++ + +    +   
Sbjct: 182 ALGKHIFELVATE-PTVLPEAEQASREVVQRGRLRSVTRRVRKDGSVVDVELRALPVSVG 240

Query: 552 S---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                +    HDI++       L  A+K AE  +  KS FLA +SHEIRTP+ AIIG + 
Sbjct: 241 GRQLGFIAIYHDITD-------LERARKAAEAANQAKSLFLATMSHEIRTPMNAIIGMTG 293

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
           ++ ++           ++   I +S   +L ++ND+LD SKIE+G+      P  L + V
Sbjct: 294 LLLDRAL----TEEQRDFVATIRQSSEALLTLLNDVLDFSKIEAGRFEAELRPFDLRQCV 349

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QII 726
              + L+ + A+EK + +    A  +P+ ++ D   ++Q+ LN++ NA+ FT  GG  + 
Sbjct: 350 ESVLDLMAVRASEKGLDLGCDLAPPLPQMLVGDASRLRQVLLNLVGNALKFTEHGGAVVS 409

Query: 727 IS------TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
           +       T   ++ E+   V+DTG+G+ +       +PF Q+  S   R  GTGLGL +
Sbjct: 410 VEGLALGGTEGAADWELTFSVQDTGLGIPDDRRTGLFQPFNQLDASVSRRFGGTGLGLAI 469

Query: 781 AKAMVDANMGKFYIFST--PAKGTLIEIIF 808
           +K +V+A  G  ++ S   P +GT      
Sbjct: 470 SKRLVEAMGGTIWVESEGVPGQGTTFRFTL 499



 Score = 57.7 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 24/243 (9%), Positives = 57/243 (23%), Gaps = 20/243 (8%)

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244
            V  + +   A      +    + +  +    V +    IF      P  R+  +   L 
Sbjct: 15  RVADLASSAHAAIFEHSRDGVLVLDAGQRIVEVNRAAERIFG-----PRTRLVGQPVGLL 69

Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
                  +        L  +E   L       +   +           + +     +   
Sbjct: 70  LPGWRPPEPRAPADAALRETE---LAGHRPGGSGPAHYLRVVTLPLPGEGDGGWVLQLHD 126

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEI- 362
                 + A   + +      V   P+    +     +   NP    L  Y   + +   
Sbjct: 127 MTARLEVEASLRQQKEFFEAVVINSPVAIITITRQFRVLSWNPEATRLFGYSPAEALGKH 186

Query: 363 ----AGGLSTLLDAPKLSDNNAIKPVMLY------RSDRTCIAASARLHTIQWNRENSLA 412
                    T+L   + +    ++   L       R D + +    R   +         
Sbjct: 187 IFELVATEPTVLPEAEQASREVVQRGRLRSVTRRVRKDGSVVDVELRALPVSVGGRQLGF 246

Query: 413 MTF 415
           +  
Sbjct: 247 IAI 249



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 48/484 (9%), Positives = 116/484 (23%), Gaps = 43/484 (8%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL---HIDPNNHIGDLLKRQNTWYGKT 147
               +   + E  +  G    + +G  + ++         +      ++++R       T
Sbjct: 160 RQFRVLSWNPEATRLFGYSPAEALGKHIFELVATEPTVLPEAEQASREVVQRGR-LRSVT 218

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                +G+   V ++L ALP+    R+  GF    I H        R   +  ++  S  
Sbjct: 219 RRVRKDGS--VVDVELRALPVSVGGRQL-GF--IAIYHDITDLERARKAAEAANQAKSLF 273

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
                           I           +  +            + L T    +L   + 
Sbjct: 274 LATMSHEIRT--PMNAIIGMTGLLLDRALTEEQRDFVATIRQSSEALLTLLNDVLDFSKI 331

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
                E        +   +     +   + E    L     P L        +   + + 
Sbjct: 332 EAGRFEAELRPFDLRQCVESVLDLMAVRASEKGLDLGCDLAPPLPQMLVGDASRLRQVLL 391

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL-STLLDAPKLSDNNAIKPVML 386
                   ++       +   L L   +   D E+   +  T L  P        +P   
Sbjct: 392 NLVGNALKFTEHGGAVVSVEGLALGGTEGAADWELTFSVQDTGLGIPDDRRTGLFQPFNQ 451

Query: 387 ------YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
                  R   T +  +     ++         +     +   F   +            
Sbjct: 452 LDASVSRRFGGTGLGLAISKRLVEAMGGTIWVESEGVPGQGTTFRFTLRAQAAPQAYAVQ 511

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV- 499
              ++ +                 + +++        N    +L G  ++     P    
Sbjct: 512 PRQEQGLLQGRR------------VLVVDD-------NALFRRLLGRQLQAWGLVPVESA 552

Query: 500 -----FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554
                  +    +  +  L +     L  T     +   +E + L L ++       +  
Sbjct: 553 SGMDALAQLEAGASFDAVLIDHHMPGLDGTALAERIRQREETRALPLVLVSTPGRRGNPP 612

Query: 555 SLTM 558
               
Sbjct: 613 EGLF 616



 Score = 45.4 bits (106), Expect = 0.044,   Method: Composition-based stats.
 Identities = 23/215 (10%), Positives = 57/215 (26%), Gaps = 19/215 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +DA   + E++    +  G    +++G  +  +             D   R+    G   
Sbjct: 38  LDAGQRIVEVNRAAERIFGPRT-RLVGQPVGLLLPGWRPPEPRAPADAALRETELAGH-- 94

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                G+     + +  LP+     E  G      +H      +  A  ++  + F  + 
Sbjct: 95  --RPGGSGPAHYLRVVTLPL---PGEGDG-GWVLQLHDMTARLEVEASLRQQKEFFEAVV 148

Query: 209 EIKK----------GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
                            S   E   +F         +   ++ +       + +    E 
Sbjct: 149 INSPVAIITITRQFRVLSWNPEATRLFGYSPAEALGKHIFELVATEPTVLPEAEQASREV 208

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293
                    +   ++D   +++         G  Q
Sbjct: 209 VQRGRLRSVTRRVRKDGSVVDVELRALPVSVGGRQ 243


>gi|258621553|ref|ZP_05716586.1| Signal transduction histidine-protein kinase barA [Vibrio mimicus
           VM573]
 gi|258586171|gb|EEW10887.1| Signal transduction histidine-protein kinase barA [Vibrio mimicus
           VM573]
          Length = 1325

 Score =  364 bits (935), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 102/375 (27%), Positives = 174/375 (46%), Gaps = 12/375 (3%)

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
            R+ +RK+  +      IL+AT + +  ++  G  L+ N    +L G    D++ KP   
Sbjct: 460 QRLAERKVLEQSQLNQEILDATPNPMYCLSANGTFLTVNAKFLELMGLYNNDVIGKPPQE 519

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLT 557
               +           +      Q  E   +     ++ + +            +     
Sbjct: 520 IFPSSVAERFAQAHQILTQQQSSQNYEISLIDYAGVQREMLVYEASFSDRADKVNGIVGI 579

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
           + D++E K+ + +L  AK  A+  S  K DFLA +SHEIRTP+ AI+G + +  N +   
Sbjct: 580 LLDMTERKEMEQELREAKDAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTQL-- 637

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
             +    +Y   I+ S   +L I+ND+LD SKIE+GK+N+     SLD+ +    +++ L
Sbjct: 638 --DATQRKYVTRINESAKNLLGIINDILDFSKIEAGKLNVERIDFSLDDVLDNVTAVISL 695

Query: 678 YANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
            A EK I        +IP  ++ D   + Q+ +N+  NA+ FT  G +I+IS       E
Sbjct: 696 KAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTQQG-EIVISARVRQLNE 754

Query: 737 ----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
               ++  V+DTG+G+   +L      F Q  NS   +  GTGLGL ++K +V+   G+ 
Sbjct: 755 QQVMLLFAVKDTGIGIAQEKLNDLFNAFSQADNSITRQYGGTGLGLSISKQLVELMGGQI 814

Query: 793 YIFSTPAKGTLIEII 807
            + S   KG+  E  
Sbjct: 815 SVHSEEGKGSTFEFS 829



 Score = 45.4 bits (106), Expect = 0.039,   Method: Composition-based stats.
 Identities = 28/263 (10%), Positives = 63/263 (23%), Gaps = 33/263 (12%)

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
           L      +   E      L+          L + S       +            E   L
Sbjct: 414 LQVNHQPIGLLELGTVGMLSMQQYHWLSQMLDDLSVAIQLTQNAELQRLAERKVLEQSQL 473

Query: 322 TPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
             E +D  P P   + ++G     N  FL L    + D I               S    
Sbjct: 474 NQEILDATPNPMYCLSANGTFLTVNAKFLELMGLYNNDVIGKPP------QEIFPSSVAE 527

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
                     +   + +  +  I +       + +      ++  +     GI  +  + 
Sbjct: 528 RFAQAHQILTQQQSSQNYEISLIDYAGVQREMLVYEASFS-DRADKVNGIVGILLDMTER 586

Query: 441 RINKRKMEIEVMQLCSI-------LEATS-------DGIAI---------INREGI--IL 475
           +  ++++        ++       L   S       + I           ++      + 
Sbjct: 587 KEMEQELREAKDAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTQLDATQRKYVT 646

Query: 476 STNRAVSKLFGYPVEDILRKPFT 498
             N +   L G   + +      
Sbjct: 647 RINESAKNLLGIINDILDFSKIE 669



 Score = 45.4 bits (106), Expect = 0.040,   Method: Composition-based stats.
 Identities = 16/144 (11%), Positives = 47/144 (32%), Gaps = 5/144 (3%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL-KRQNTWY 144
            + + A+G    ++ +  + +G Y   +IG    ++      +       +L ++Q++  
Sbjct: 485 MYCLSANGTFLTVNAKFLELMGLYNNDVIGKPPQEIFPSSVAERFAQAHQILTQQQSSQN 544

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            + +L    G    + +  A+     R  + +G    GI+       +     +      
Sbjct: 545 YEISLIDYAGVQREMLVYEAS--FSDRADKVNGI--VGILLDMTERKEMEQELREAKDAA 600

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQ 228
             + + K    +    +       
Sbjct: 601 DAMSQAKGDFLANMSHEIRTPMNA 624


>gi|319408254|emb|CBI81907.1| two-component sensor histidine kinase [Bartonella schoenbuchensis
           R1]
          Length = 772

 Score =  364 bits (935), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 123/506 (24%), Positives = 222/506 (43%), Gaps = 53/506 (10%)

Query: 342 FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401
            Y + +   +  Y   D +     ++ +++    +  +  + +M              + 
Sbjct: 284 VYWSRAMYEMLGYVPQDALLSISQITAIINPTDTNFFDLAQELM----SGEKKHIDINI- 338

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
            ++    + + M F       + P      GI  +  + R    +     +++   +E  
Sbjct: 339 PMRHADGHYIWMRFRAEVTEGEEP---HLVGISFDISEQRQLAEQTAQADLRIRDAIENI 395

Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
           S+   + + EG ++ +N    +    P + +        +E      ++ YL +      
Sbjct: 396 SESFVLWDSEGRLVMSNSKFCEYAAIPKQMLQSGIQRATVEAMARPAISEYLLKEDGTG- 454

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK----------- 570
                  ++  T +   L +    ++         T  DISE KQ++ K           
Sbjct: 455 ----NLTSIRQTADGCWLKIN---ERRTQDGGLVCTGTDISELKQQQEKFKNSEKSLFSF 507

Query: 571 ------------------------LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
                                   L   K+ AE  +  KS+FLA +SHE+RTPL AI+GF
Sbjct: 508 IQELKRARGNAQQRATEVEKLNKSLQAEKERAESANKAKSEFLANISHELRTPLNAILGF 567

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
           S+++    FGPLG+ RY EY   I  SG  +L ++ND+LD+SKIE+G+  L  + + L  
Sbjct: 568 SDIMLQSTFGPLGSQRYKEYMRDIHNSGTHLLTLINDILDMSKIEAGRFTLDCKNIDLGP 627

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726
            +SEA+  +   A EK++ +  + A  +     D R+++QI LN++SNA+ FTPSGG I 
Sbjct: 628 IISEAVRTLTPQAQEKKVSVTENIAPKL-HAEVDCRAIRQIFLNLISNAVKFTPSGGNID 686

Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
           +         +I +++DTGVG+    ++K  +PF Q+ N       G+GLGL +++++V 
Sbjct: 687 V-CAFQKENNLIFKIKDTGVGIPQAAIKKLGQPFEQVENQFTKTHTGSGLGLAISRSLVK 745

Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLYD 812
            + GK  I S   KGT + I  P+  
Sbjct: 746 LHKGKLEITSKEEKGTTVTITMPIQQ 771


>gi|295399495|ref|ZP_06809477.1| multi-sensor signal transduction histidine kinase [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312109947|ref|YP_003988263.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y4.1MC1]
 gi|294978961|gb|EFG54557.1| multi-sensor signal transduction histidine kinase [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311215048|gb|ADP73652.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y4.1MC1]
          Length = 585

 Score =  364 bits (935), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 103/368 (27%), Positives = 178/368 (48%), Gaps = 26/368 (7%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           +  E++  +L +++E    G+ +I+R G I   NRA  ++F     D L +P+       
Sbjct: 235 KAQEMQTDRLHTLIENVGSGLILIDRRGYINLINRAFKEIFHIRPVDYLYRPYAEAFAH- 293

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDIS 562
               +   + EI   +  +  +++ L    E K   +                L  HDI+
Sbjct: 294 --KEIVQLVNEIFMKET-KVRKQMLLTIGIERKHFEVYGAPIIGTNDEWKGIVLVFHDIT 350

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E K+ +                + DF+A VSHE++TP+T+I GF+E + +   G + + R
Sbjct: 351 ELKKLE--------------QMRKDFVANVSHELKTPITSIKGFAETLLD---GAMKDER 393

Query: 623 YIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
            +E + + I +    +  +V DLLD+SKIE  +  LH E V L   + E   + Q  A E
Sbjct: 394 TLEHFLSIIWKESERLQTLVQDLLDLSKIEQQEFQLHMETVDLTHLLHEIAIMFQRKAEE 453

Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
           K I  R   A +I  +  D   +KQI +N+++NA+ +TP GGQ+ +       E + + V
Sbjct: 454 KGIDFRMHAAKSI-YMEGDANRLKQIFINLITNALTYTPKGGQVEVIAEEQEEETL-VHV 511

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
           +DTG+G+   E+ +  + F ++  ++     GTGLGL + K +V+A+ G   + S   KG
Sbjct: 512 KDTGIGIEEAEIPRIFERFYRVDKARSRHSGGTGLGLAIVKHLVEAHHGHITVKSAVGKG 571

Query: 802 TLIEIIFP 809
           T   + FP
Sbjct: 572 TTFTVHFP 579


>gi|163846387|ref|YP_001634431.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222524154|ref|YP_002568625.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
 gi|163667676|gb|ABY34042.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222448033|gb|ACM52299.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
          Length = 599

 Score =  364 bits (934), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 97/410 (23%), Positives = 173/410 (42%), Gaps = 16/410 (3%)

Query: 403 IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
           + W           P    +  P      G+       R     +     +   I++   
Sbjct: 189 LPWAASMLFVTGLSPIPFVDPTPVAFALGGLAFTVAMQRYRALDLLPAARE--RIVDQMP 246

Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522
           D I +++    I+  N A   +      D+L K             +             
Sbjct: 247 DAIIVLDMHDRIIDLNPAAQAILSAT-TDVLGKSLARVAPPWLIEQVRDRYEGQFE---- 301

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEK 580
                +            LR    +    S       + DI+ +KQ    L  AK+ AE 
Sbjct: 302 -----VQQTGETGTTTYDLRCTTLRDRDGSPAGRIFVLRDITLFKQAAQALQEAKEAAEA 356

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            S  KS FL+ +SHE+RTPLTAI+G+SE ++        +    +  + I  +G  +L +
Sbjct: 357 ASQAKSAFLSMMSHELRTPLTAILGYSEFLREDLLNRDLHSLTSD-LDRIITAGRHLLTL 415

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILAD 700
           +ND+LD +++E+  + +H EPV +   ++E +  +Q  A + +  I  +   ++P +LAD
Sbjct: 416 INDILDYARLEANAVTIHPEPVHMSTLINEVVMTLQGLAKQGQNTITVTVEPDLPPVLAD 475

Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760
              ++Q+ LN++ NA  FT  G +I +    ++  E+ + V DTG+G+   +L+   KPF
Sbjct: 476 PVRLRQVLLNLVGNACKFTGQG-EIRVHCYRSTTAEIQIDVSDTGIGIAADQLQHLFKPF 534

Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            Q+ N    R  GTGLGL + + +     G   + S P +G+   +  P+
Sbjct: 535 VQVDNGPTRRYGGTGLGLAICQRLCQVMGGAILVTSEPGRGSTFSVRLPI 584



 Score = 40.4 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/151 (9%), Positives = 42/151 (27%), Gaps = 2/151 (1%)

Query: 313 AYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
              D         VD+ P    V      +   NP+   +    +    +    ++    
Sbjct: 229 RALDLLPAARERIVDQMPDAIIVLDMHDRIIDLNPAAQAILSATTDVLGKSLARVAPPWL 288

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ-WNRENSLAMTFIPFEKANQFPENMPQ 430
             ++ D    +  +    +        R  T++  +   +  +  +      +      Q
Sbjct: 289 IEQVRDRYEGQFEVQQTGETGTTTYDLRCTTLRDRDGSPAGRIFVLRDITLFKQAAQALQ 348

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
              E  +  ++     + +   +L + L A 
Sbjct: 349 EAKEAAEAASQAKSAFLSMMSHELRTPLTAI 379



 Score = 38.1 bits (87), Expect = 5.9,   Method: Composition-based stats.
 Identities = 22/231 (9%), Positives = 68/231 (29%), Gaps = 13/231 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D H  + +++      +      ++G  L  V+    I+           ++ + G+  
Sbjct: 252 LDMHDRIIDLNPAAQAILSATTD-VLGKSLARVAPPWLIEQV---------RDRYEGQ-F 300

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                G       DL    +  R+   +G R F ++    +        +   +      
Sbjct: 301 EVQQTGETGTTTYDLRCTTLRDRDGSPAG-RIF-VLRDITLFKQAAQALQEAKEAAEAAS 358

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           + K    S+   +              ++  + +   +    D          L +  + 
Sbjct: 359 QAKSAFLSMMSHELRTPLTAILGYSEFLREDLLNRDLHSLTSDLDRIITAGRHLLTLIND 418

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
           + +        +  + +  +  TL N    + + L+ +   +++   +   
Sbjct: 419 ILDYARLEANAVTIHPEPVHMSTLINEVVMTLQGLAKQGQNTITVTVEPDL 469


>gi|160877018|ref|YP_001556334.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS195]
 gi|160862540|gb|ABX51074.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS195]
 gi|315269221|gb|ADT96074.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS678]
          Length = 1238

 Score =  364 bits (934), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 124/594 (20%), Positives = 207/594 (34%), Gaps = 46/594 (7%)

Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291
           P  R+ + +   ++      + +     P          E + +           +    
Sbjct: 381 PASRLLSHLEGCSQEPRKPPEKITRGWEPWFLLVSRIFEENKQYTH------HLAEQNKR 434

Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLL 350
           L        E L          Y      L    +D  P    F    GN    N +   
Sbjct: 435 LDKLVARRTERLKDTTERREREYA-----LLRSLLDSIPEAIVFKDKEGNYLGCNKAAER 489

Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
           +  Y   + I ++     L          A    +L             L          
Sbjct: 490 MLGYTESEMIGLSS--EDLTSPEMGIRIRAEDEQVLKDRTPLRYQEKVELA------GKP 541

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA--II 468
           + +  +     N+  E      +  +      +  ++ +   +    ++A  DG+    +
Sbjct: 542 VLLDTLKLPFYNRRGELQGLIAVWRDVTREYESAEQLRLSEERYHLAMDAVEDGLWDWYL 601

Query: 469 NREGIILSTNRAVSKLFGYPVED--ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
           + E II   N A   + GY   +   L          +    +  Y  + L+  +    E
Sbjct: 602 DSEQII--CNPAYYSMLGYKTNEFPALVSTIDELSHPDDRIRVEEYRAQYLADPV-GAYE 658

Query: 527 KITLGSTKEEKLLSL--RIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKE 581
                  K      +  R  + +            T  DI+  K  +  L  AK+ AE  
Sbjct: 659 IEFRMLGKNGGYHWVLSRGRVVEFTAEGQPKRMLGTHKDITRHKSNEVALLEAKQDAELA 718

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
           + +KS+FLA +SHEIRTP+ AIIG  ++ +          +  +Y      S   +L I+
Sbjct: 719 NLYKSEFLANMSHEIRTPMNAIIGMLQLAQRTSLTA----QQKDYLEKAGFSAQSLLRII 774

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-AD 700
           ND+LD SKIE+GK+ L   P  LD+ +  A+ L  L A E+ + +          IL  D
Sbjct: 775 NDILDFSKIEAGKLELERVPFPLDKVLDHALDLNSLKAQEQGVELLLYAPVTAGLILKGD 834

Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE------VILRVRDTGVGMTNYELE 754
              + Q+ +N+LSNA+ FT SG    I        E      +   VRDTG+G+   + +
Sbjct: 835 PLRLGQVLINLLSNAVKFTQSG---EIELGCEDVGERDHRITLKFWVRDTGIGIGKDQQD 891

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           K    F Q   S   +  GTGLGL ++K +V    GK  + S    G+      
Sbjct: 892 KLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGKMQVQSELGVGSTFSFTI 945



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 48/347 (13%), Positives = 100/347 (28%), Gaps = 30/347 (8%)

Query: 9   NPEDILTSNCKGNTQDLSK--KKIDNGFE-----TEKSKKENPCHDSFEQSNFTDQNQES 61
           +P   L S+ +G +Q+  K  +KI  G+E       +  +EN  +           ++  
Sbjct: 380 SPASRLLSHLEGCSQEPRKPPEKITRGWEPWFLLVSRIFEENKQYTHHLAEQNKRLDKLV 439

Query: 62  VSNTNYLDSENTFVFDP--------IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM 113
              T  L                          +  D  G     ++   + +G    +M
Sbjct: 440 ARRTERLKDTTERREREYALLRSLLDSIPEAIVFK-DKEGNYLGCNKAAERMLGYTESEM 498

Query: 114 IGMRLCDVSDIL-HIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172
           IG+   D++     I        +LK +     +     +E     V +D   LP Y+R 
Sbjct: 499 IGLSSEDLTSPEMGIRIRAEDEQVLKDRTPLRYQE---KVELAGKPVLLDTLKLPFYNRR 555

Query: 173 REFSGFRGFGIVHVN-RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231
            E  G     +     R       L    ++    +  ++ G      +   I    +  
Sbjct: 556 GELQGL--IAVWRDVTREYESAEQLRLSEERYHLAMDAVEDGLWDWYLDSEQIICNPAYY 613

Query: 232 PHLRMK----NKVSSLTEYYAHKDDVLKTEKYPL--LTSEESSLPEQEDFHTINLNQYTK 285
             L  K      + S  +  +H DD ++ E+Y    L     +   +      N   +  
Sbjct: 614 SMLGYKTNEFPALVSTIDELSHPDDRIRVEEYRAQYLADPVGAYEIEFRMLGKNGGYHWV 673

Query: 286 KQYFGTLQ-NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI 331
                 ++     +    L      +     +       +  +   +
Sbjct: 674 LSRGRVVEFTAEGQPKRMLGTHKDITRHKSNEVALLEAKQDAELANL 720


>gi|83945614|ref|ZP_00957960.1| non-motile and phage-resistance protein [Oceanicaulis alexandrii
           HTCC2633]
 gi|83850980|gb|EAP88839.1| non-motile and phage-resistance protein [Oceanicaulis alexandrii
           HTCC2633]
          Length = 849

 Score =  364 bits (934), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 132/651 (20%), Positives = 243/651 (37%), Gaps = 60/651 (9%)

Query: 191 NDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK 250
            D  A+    + +   L+       +      +             +N  +    +    
Sbjct: 198 RDEVAMLTDAEGRLLALNP--DTPFTGAPFAAERLGLDPEAVSEMSRNGGAMRGAHLGED 255

Query: 251 DDVLKTEKYPLLTSEESSLPEQEDFHTI-NLNQYTKKQYFGTLQNNSKESFEYL--SHRN 307
             +L          +  SL          N         F      +      L      
Sbjct: 256 ARILGAAAINGAPLQALSLGPDGIDRQAWNSTLLFHLLLFLAPLGTAGALSIVLRNQMGR 315

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYA-NPSFLLLTKYKSVDDIEIAGGL 366
                A   + E      ++      + +           SF  L      + +      
Sbjct: 316 LGDTQARLHDSEGRLHLAIEGARCGVWDWDLDTDEVVLTDSFAQLIGRARGESLSGP--- 372

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
                   L      +P +         A    L         +  +      +    P 
Sbjct: 373 -----ELLLLLGKEDRPKVRAALRGAANAQDVDLEV------RAAGLPVWLQLRGRLLPH 421

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
                G+  +  + +  + ++     +L + LE+ S+   + +  G ++  NR     FG
Sbjct: 422 TRRIIGVAIDITERKGAQARVAAAESRLRAALESMSESFVLWDARGRLVLWNRKFRDFFG 481

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
           +   D+         EQ   +          S D +   +        + + +      +
Sbjct: 482 FNEPDLR---IGSSYEQVEAAAARAIKAAHASEDGQDDYDLEL----NDGRWIHY---AE 531

Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSHAKKI----------------------------A 578
           +            DI+  K ++  L    +                             A
Sbjct: 532 RRTADGGLVSVGADITALKDQQRALKDNDREMRRTVENLRRSQERVQELAANYEQEKIRA 591

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
           E+ +  KS+FLA +SHE+RTPL AI GFSE++  + FGPLG+ RY +Y   I  SG  +L
Sbjct: 592 EEANRSKSEFLANMSHELRTPLNAINGFSEIMAGEMFGPLGHERYQDYVRDILSSGQHLL 651

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
            ++ND+LD+SKIE+GKM L  EP+   E + + + +++  A EK I +     + +P I 
Sbjct: 652 SLINDILDMSKIEAGKMQLQPEPLMPAEVIEQCVRIMRARAEEKSIELTVE-GSELPEIT 710

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
           AD R++KQ+ LN++SNA+ FTP GG++ +     + + V+L+V DTG+G++  +L++  +
Sbjct: 711 ADPRALKQVILNLMSNAVKFTPEGGKVKLR-GFQAADGVVLQVSDTGIGISEDDLQRVGR 769

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           PF QI +    + +G+GLGL L+K++++ + G   I S   +GT +    P
Sbjct: 770 PFEQIESQHSKKHQGSGLGLALSKSLIEMHGGALRIDSRLGEGTTVSFTLP 820



 Score = 58.1 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 35/385 (9%), Positives = 88/385 (22%), Gaps = 31/385 (8%)

Query: 89  IDAHGYLKEISEE--------LPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ 140
            DA G L  ++ +          + +G     +  M     +        +         
Sbjct: 205 TDAEGRLLALNPDTPFTGAPFAAERLGLDPEAVSEMSRNGGAMRGAHLGEDARILGAAAI 264

Query: 141 NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN--DPRALGK 198
           N    +      +G +           +              IV  N++    D +A   
Sbjct: 265 NGAPLQALSLGPDGIDRQAWNSTLLFHLLLFLAPLGTAGALSIVLRNQMGRLGDTQARLH 324

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
             + +     E  +          D          L  + +  SL+          +   
Sbjct: 325 DSEGRLHLAIEGARCGVWDWDLDTDEVVLTDSFAQLIGRARGESLSGPELLLLLGKEDRP 384

Query: 259 YPLLTSEESSLPEQEDFH-TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
                   ++  +  D            +     L +  +     +         A    
Sbjct: 385 KVRAALRGAANAQDVDLEVRAAGLPVWLQLRGRLLPHTRRIIGVAIDITERKGAQARVAA 444

Query: 318 GENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
            E+     ++     F ++   G L   N  F     +   D    +          ++ 
Sbjct: 445 AESRLRAALESMSESFVLWDARGRLVLWNRKFRDFFGFNEPDLRIGSS-------YEQVE 497

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
              A      + S+         L+  +W               A +   +     +  +
Sbjct: 498 AAAARAIKAAHASEDGQDDYDLELNDGRW------------IHYAERRTADGGLVSVGAD 545

Query: 437 DVDTRINKRKMEIEVMQLCSILEAT 461
               +  +R ++    ++   +E  
Sbjct: 546 ITALKDQQRALKDNDREMRRTVENL 570


>gi|258627567|ref|ZP_05722344.1| Signal transduction histidine-protein kinase barA [Vibrio mimicus
           VM603]
 gi|258580149|gb|EEW05121.1| Signal transduction histidine-protein kinase barA [Vibrio mimicus
           VM603]
          Length = 1325

 Score =  364 bits (934), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 102/375 (27%), Positives = 174/375 (46%), Gaps = 12/375 (3%)

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
            R+ +RK+  +      IL+AT + +  ++  G  L+ N    +L G    D++ KP   
Sbjct: 460 QRLAERKVLEQSQLNQEILDATPNPMYCLSANGTFLTVNAKFLELMGLYNNDVIGKPPQE 519

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLT 557
               +           +      Q  E   +     ++ + +            +     
Sbjct: 520 IFPSSVAERFAQAHQILTQQQSSQNYEISLIDYAGVQREMLVYEASFSDRADKVNGIVGI 579

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
           + D++E K+ + +L  AK  A+  S  K DFLA +SHEIRTP+ AI+G + +  N +   
Sbjct: 580 LLDMTERKEMEQELREAKDAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTQL-- 637

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
             +    +Y   I+ S   +L I+ND+LD SKIE+GK+N+     SLD+ +    +++ L
Sbjct: 638 --DATQRKYVTRINESAKNLLGIINDILDFSKIEAGKLNVERIDFSLDDVLDNVTAVISL 695

Query: 678 YANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
            A EK I        +IP  ++ D   + Q+ +N+  NA+ FT  G +I+IS       E
Sbjct: 696 KAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTQQG-EIVISARVRQINE 754

Query: 737 ----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
               ++  V+DTG+G+   +L      F Q  NS   +  GTGLGL ++K +V+   G+ 
Sbjct: 755 QQVMLLFAVKDTGIGIAQEKLNDLFNAFSQADNSITRQYGGTGLGLSISKQLVELMGGQI 814

Query: 793 YIFSTPAKGTLIEII 807
            + S   KG+  E  
Sbjct: 815 SVHSEEGKGSTFEFS 829



 Score = 45.4 bits (106), Expect = 0.039,   Method: Composition-based stats.
 Identities = 28/263 (10%), Positives = 63/263 (23%), Gaps = 33/263 (12%)

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
           L      +   E      L+          L + S       +            E   L
Sbjct: 414 LQVNHQPIGLLELGTVGMLSMQQYHWLSQMLDDLSVAIQLTQNAELQRLAERKVLEQSQL 473

Query: 322 TPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
             E +D  P P   + ++G     N  FL L    + D I               S    
Sbjct: 474 NQEILDATPNPMYCLSANGTFLTVNAKFLELMGLYNNDVIGKPP------QEIFPSSVAE 527

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
                     +   + +  +  I +       + +      ++  +     GI  +  + 
Sbjct: 528 RFAQAHQILTQQQSSQNYEISLIDYAGVQREMLVYEASFS-DRADKVNGIVGILLDMTER 586

Query: 441 RINKRKMEIEVMQLCSI-------LEATS-------DGIAI---------INREGI--IL 475
           +  ++++        ++       L   S       + I           ++      + 
Sbjct: 587 KEMEQELREAKDAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTQLDATQRKYVT 646

Query: 476 STNRAVSKLFGYPVEDILRKPFT 498
             N +   L G   + +      
Sbjct: 647 RINESAKNLLGIINDILDFSKIE 669



 Score = 45.4 bits (106), Expect = 0.040,   Method: Composition-based stats.
 Identities = 16/144 (11%), Positives = 47/144 (32%), Gaps = 5/144 (3%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL-KRQNTWY 144
            + + A+G    ++ +  + +G Y   +IG    ++      +       +L ++Q++  
Sbjct: 485 MYCLSANGTFLTVNAKFLELMGLYNNDVIGKPPQEIFPSSVAERFAQAHQILTQQQSSQN 544

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            + +L    G    + +  A+     R  + +G    GI+       +     +      
Sbjct: 545 YEISLIDYAGVQREMLVYEAS--FSDRADKVNGI--VGILLDMTERKEMEQELREAKDAA 600

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQ 228
             + + K    +    +       
Sbjct: 601 DAMSQAKGDFLANMSHEIRTPMNA 624


>gi|322419914|ref|YP_004199137.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           M18]
 gi|320126301|gb|ADW13861.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           M18]
          Length = 869

 Score =  364 bits (934), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 101/748 (13%), Positives = 228/748 (30%), Gaps = 41/748 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI-DPNNHIGDLLKRQNTWYGKT 147
            DA G ++ ++ +  +  G    ++ G     +       + +  + + +     W G+ 
Sbjct: 142 TDAVGNIEFVNPKFTEVTGYTVAEVAGKNPRILKSGKTPPEVHKELWETICAGREWRGEM 201

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                 G         A  PI     + S F    +              +  + KFS  
Sbjct: 202 VNRKKNGEVY--WESAAISPILDIEGKISNF--IAVTEDITAHKRAEEALRESENKFSKA 257

Query: 208 HEIKKGHSSVEK-EKYDIFSQQSPPPHLRM--KNKVSSLTEYY----AHKDDVLKTEKYP 260
            +      ++    +                 +++V   T        + DD  +  +  
Sbjct: 258 FQAAPELFTISSLAEGRYIEVNEAFERTLQYSRDEVVGHTPREFGIWVNPDDRDQVVRML 317

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
                              +           ++                         E 
Sbjct: 318 REQRRVRDFETSFRSKAGTVIVGLLSAEIIEIKGEECLVAITKDITARKLSEEALRFSEA 377

Query: 321 LTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
                    PI          +   NP+      Y  + ++E    L  L       D+ 
Sbjct: 378 RYRALFRDNPIMIVTLDTELTMLAVNPTCASQLGYT-ISELEGRSVLE-LFHED---DHL 432

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
           A+   +L            +   ++ +    L       +       ++       +  +
Sbjct: 433 AVTEQLLACLQDPGQVHRWQFRKVRKDGS--LIWVEEIAQGVYDLNGSLNILVCCQDVTE 490

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
            +  +  ++    +  +     + GI  +  +G +L  N+    + GY  E++  +    
Sbjct: 491 RKRTEEALQESEERFRATFNQAAVGIGHVGPDGRVLLVNQKYCDIVGYSEEELKARKVQE 550

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YS 555
               +       +   +L      +         K+   + + + +  +  +        
Sbjct: 551 ITHPDDLETSMIHFQHMLE-GTLGSYSLEKRYIRKDGSTVWVDLTVSTVVDAGGKLKFAV 609

Query: 556 LTMHDISEWKQEKN-------KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
             + DI+E KQ +        +L       E  +     F    +H++R PL  I G+ +
Sbjct: 610 GVVADITERKQAEEKIRILNAELEARAAELELANQELDAFNYTSAHDLRQPLNTINGYCQ 669

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
            IK +R G   + + + Y +        +  ++  LL+ S++   ++  H E V L    
Sbjct: 670 EIK-ERCGDKLDEQCLRYLDETYNGTLRMNRLIEALLNFSRV--ARIEPHRETVDLFSMA 726

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
           +E    ++L   E+R+ +R     +  R+  D   ++ +  N++ NA  +T    + +I 
Sbjct: 727 NEIAMELKLADPERRVTLRI---ADGIRVDGDATLLRVVLDNLIGNAWKYTSKQEEGVIE 783

Query: 729 TTHTS-NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
              T  + +    VRD G+G    E +K   PF ++  S      G G+GL   + ++  
Sbjct: 784 LGMTEIDGKPAFFVRDNGIGFDMSEADKLFLPFHRL--SGAEIYRGFGIGLATVERIIRR 841

Query: 788 NMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
           + G+ +    P  G       P    S 
Sbjct: 842 HGGRVWAEGEPGNGACFYFTLPADKVSA 869



 Score =  128 bits (321), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 52/507 (10%), Positives = 139/507 (27%), Gaps = 46/507 (9%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D +  +   +       G  A +++G ++        I P       L  ++   GKT 
Sbjct: 40  VDMNRKVLFANLVAAAIFGCKAQELLGKQV-----DFLIQPGQITELKLASRD---GKTV 91

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
              +      + ++  A     +         F  ++            ++L +      
Sbjct: 92  SVEV----WAIEMEWNA----DKAH-------FIALNDITDRKMKEQELRKLYRAVLQSP 136

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
            I     +V     +  + +          +V+                   L  +  + 
Sbjct: 137 SIVMITDAVGN--IEFVNPKFTEVTGYTVAEVAGKNPRILKSGKTPPEVHKELWETICAG 194

Query: 269 LPEQEDF--HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP----SLSAYFDEGENLT 322
              + +      N   Y +      + +   +   +++                E EN  
Sbjct: 195 REWRGEMVNRKKNGEVYWESAAISPILDIEGKISNFIAVTEDITAHKRAEEALRESENKF 254

Query: 323 PETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
            +     P  F + S   G     N +F    +Y   + +        +   P   D   
Sbjct: 255 SKAFQAAPELFTISSLAEGRYIEVNEAFERTLQYSRDEVVGHTPREFGIWVNPDDRD--- 311

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
            + V + R  R                   + +      +       +    I  +    
Sbjct: 312 -QVVRMLREQRRVRDFETSFR--SKAGTVIVGLLSAEIIEIKGEECLV---AITKDITAR 365

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           ++++  +     +  ++       I  ++ E  +L+ N   +   GY + ++  +     
Sbjct: 366 KLSEEALRFSEARYRALFRDNPIMIVTLDTELTMLAVNPTCASQLGYTISELEGRSVLEL 425

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM-- 558
             ++    +   L   L  D  Q          K+  L+ +  I + +   +     +  
Sbjct: 426 FHEDDHLAVTEQLLACL-QDPGQVHRWQFRKVRKDGSLIWVEEIAQGVYDLNGSLNILVC 484

Query: 559 -HDISEWKQEKNKLSHAKKIAEKESSH 584
             D++E K+ +  L  +++      + 
Sbjct: 485 CQDVTERKRTEEALQESEERFRATFNQ 511



 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 42/399 (10%), Positives = 112/399 (28%), Gaps = 24/399 (6%)

Query: 69  DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID 128
           +SEN F          FT +  A G   E++E   +T+     +++G    +    ++ D
Sbjct: 249 ESENKFSKAFQAAPELFTISSLAEGRYIEVNEAFERTLQYSRDEVVGHTPREFGIWVNPD 308

Query: 129 PNNHIGDLLKRQNTWYG-KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187
             + +  +L+ Q      +T+     GT +   +    + I              I    
Sbjct: 309 DRDQVVRMLREQRRVRDFETSFRSKAGTVIVGLLSAEIIEIKGEE------CLVAITKDI 362

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS---PPPHLRMKNKVSSLT 244
                     +  + ++  L             +  + +            +        
Sbjct: 363 TARKLSEEALRFSEARYRALFRDNPIMIVTLDTELTMLAVNPTCASQLGYTISELEGRSV 422

Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTI--NLNQYTKKQYFGTLQNNSKESFEY 302
               H+DD L   +  L   ++     +  F  +  + +    ++    + + +      
Sbjct: 423 LELFHEDDHLAVTEQLLACLQDPGQVHRWQFRKVRKDGSLIWVEEIAQGVYDLNGSLNIL 482

Query: 303 L---SHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVD 358
           +                E E     T ++  +    V   G +   N  +  +  Y   +
Sbjct: 483 VCCQDVTERKRTEEALQESEERFRATFNQAAVGIGHVGPDGRVLLVNQKYCDIVGYSEEE 542

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS-DRTCIAASARLHTIQWNRENSLAMTFIP 417
                   +  +      D+     +      + T  + S     I+ +    + +    
Sbjct: 543 L------KARKVQEITHPDDLETSMIHFQHMLEGTLGSYSLEKRYIRKDGST-VWVDLTV 595

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
               +   +     G+  +  + +  + K+ I   +L +
Sbjct: 596 STVVDAGGKLKFAVGVVADITERKQAEEKIRILNAELEA 634



 Score =  100 bits (250), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 32/294 (10%), Positives = 82/294 (27%), Gaps = 38/294 (12%)

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIA 363
                  +       +         P    +      + +AN     +   K+ + +   
Sbjct: 9   MAQLELSNQKLQACLSRFQSITTNSPHGILIVDMNRKVLFANLVAAAIFGCKAQELLGK- 67

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
                      L     I  + L   D   ++       ++WN + +  +          
Sbjct: 68  -------QVDFLIQPGQITELKLASRDGKTVSVEVWAIEMEWNADKAHFIAL-------- 112

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
                       +  D ++ ++++        ++L++    + I +  G I   N   ++
Sbjct: 113 -----------NDITDRKMKEQELRK---LYRAVLQS-PSIVMITDAVGNIEFVNPKFTE 157

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           + GY V ++  K   +     TP  ++  L E +            +   K  ++     
Sbjct: 158 VTGYTVAEVAGKNPRILKSGKTPPEVHKELWETICAGREWRG--EMVNRKKNGEVYWESA 215

Query: 544 IIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
            I  +         +     DI+  K+ +  L  ++    K      +     S
Sbjct: 216 AISPILDIEGKISNFIAVTEDITAHKRAEEALRESENKFSKAFQAAPELFTISS 269



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/159 (13%), Positives = 61/159 (38%), Gaps = 26/159 (16%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           +K++  + +  SI   +  GI I++    +L  N   + +FG   +++L K     ++  
Sbjct: 17  QKLQACLSRFQSITTNSPHGILIVDMNRKVLFANLVAAAIFGCKAQELLGKQVDFLIQPG 76

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP--FSSCYSLTMHDIS 562
             +                        ++++ K +S+ +   ++       + + ++DI+
Sbjct: 77  QIT--------------------ELKLASRDGKTVSVEVWAIEMEWNADKAHFIALNDIT 116

Query: 563 EWKQEKNKLSHAKKIAEK--ESSHKSDFLARVSHEIRTP 599
           + K ++ +L    +   +       +D +  +  E   P
Sbjct: 117 DRKMKEQELRKLYRAVLQSPSIVMITDAVGNI--EFVNP 153


>gi|75909154|ref|YP_323450.1| multi-sensor signal transduction histidine kinase [Anabaena
           variabilis ATCC 29413]
 gi|75702879|gb|ABA22555.1| multi-sensor signal transduction histidine kinase [Anabaena
           variabilis ATCC 29413]
          Length = 573

 Score =  364 bits (934), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 107/424 (25%), Positives = 195/424 (45%), Gaps = 22/424 (5%)

Query: 405 WNRENSLAMTFIPFEKANQ---------FPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
           W     + + F       +                  +  E  +  I +  +     Q  
Sbjct: 149 WVGGRLVGVVFHEHCGELRQWTVDEENFAGSIADFVSLAMETRERNIAQEALRKSEAQFR 208

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN----- 510
           +I E +S GI +++ +  I+  N A+ ++ GY  E++  K FT ++ Q    V       
Sbjct: 209 AIFELSSIGIGLVDMKAQIVDANPALCQMLGYQREELCGKRFTDYISQQRGDVERYKQLM 268

Query: 511 -HYLTEILSLDLRQTLEKITLGSTKEEKLLS----LRIIIKKLPFSSCYSLTMHDISEWK 565
                +      +  LE       ++ +L+     + +I         +   + DI++ K
Sbjct: 269 TEICIDAQQHHEKPHLEIERAFLHRDGRLVWTRLSVSVIPGSYGEPEYFLAIIDDITDRK 328

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           Q + KL  ++  AE  S  KS+FLA +SHE+RTPL AI+G S++++ +  G L N +  E
Sbjct: 329 QTEMKLRASQAAAEAGSRAKSEFLATMSHELRTPLNAIMGLSQLLQQEIVGSL-NEKQQE 387

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           Y + I  SG  +L ++ND+LD+SK+E+GK  L   P+ + +  ++ +  V+  A  K + 
Sbjct: 388 YISCIYSSGEHLLALINDILDLSKVEAGKEELFLIPLLVIDVCNDVLLTVRDRAISKGLK 447

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +           +AD R +KQ+ LN+L+NAI FT  G ++ ++        +   + DTG
Sbjct: 448 LTQEIDPEASICIADDRRIKQMLLNLLTNAIKFTSVG-EVSLTVKRVPEG-INFIISDTG 505

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+ + +     +PF Q+ +    + EGTGLGL L + +   + G   + ST   G+   
Sbjct: 506 IGIDSNQFPLLFEPFKQLDSRLNRQYEGTGLGLALTRKLARLHGGDVTVTSTVGVGSQFT 565

Query: 806 IIFP 809
           +  P
Sbjct: 566 LFLP 569



 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/321 (11%), Positives = 78/321 (24%), Gaps = 31/321 (9%)

Query: 48  SFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRF--TWN--------IDAHGYLKE 97
           + ++ NF     + VS        N           +F   +         +D    + +
Sbjct: 170 TVDEENFAGSIADFVSLAMETRERNIAQEALRKSEAQFRAIFELSSIGIGLVDMKAQIVD 229

Query: 98  ISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN---------HIGDLLKRQNTWYGKTT 148
            +  L + +G    ++ G R  D       D                    +     +  
Sbjct: 230 ANPALCQMLGYQREELCGKRFTDYISQQRGDVERYKQLMTEICIDAQQHHEKPHLEIERA 289

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +G  ++  + ++ +P      E   F    I+             +          
Sbjct: 290 FLHRDGRLVWTRLSVSVIP--GSYGEPEYF--LAIIDDITDRKQTEMKLRASQAAAEAGS 345

Query: 209 EIKKGHSSVEKEKYDIFSQQS-PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
             K    +    +             L  +  V SL E        + +    LL     
Sbjct: 346 RAKSEFLATMSHELRTPLNAIMGLSQLLQQEIVGSLNEKQQEYISCIYSSGEHLLALIND 405

Query: 268 SL-------PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
            L        ++E F    L          T+++ +      L+    P  S    +   
Sbjct: 406 ILDLSKVEAGKEELFLIPLLVIDVCNDVLLTVRDRAISKGLKLTQEIDPEASICIADDRR 465

Query: 321 LTPETVDKCPIPFFVYSHGNL 341
           +    ++         S G +
Sbjct: 466 IKQMLLNLLTNAIKFTSVGEV 486


>gi|153002294|ref|YP_001367975.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS185]
 gi|151366912|gb|ABS09912.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS185]
          Length = 1238

 Score =  364 bits (934), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 124/594 (20%), Positives = 207/594 (34%), Gaps = 46/594 (7%)

Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291
           P  R+ + +   ++      + +     P          E + +           +    
Sbjct: 381 PASRLLSHLEGCSQEPRKPPEKITRGWEPWFLLVSRIFEENKQYTH------HLAEQNKR 434

Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLL 350
           L        E L          Y      L    +D  P    F    GN    N +   
Sbjct: 435 LDKLVARRTERLKDTTERREREYA-----LLRSLLDSIPEAIVFKDKEGNYLGCNKAAER 489

Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
           +  Y   + I ++     L          A    +L             L          
Sbjct: 490 MLGYTESEMIGLSS--EDLTSPEMGIRIRAEDEQVLKDRTPLRYQEKVELA------GKP 541

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA--II 468
           + +  +     N+  E      +  +      +  ++ +   +    ++A  DG+    +
Sbjct: 542 VLLDTLKLPFYNRRGELQGLIAVWRDVTREYESAEQLRLSEERYHLAMDAVEDGLWDWYL 601

Query: 469 NREGIILSTNRAVSKLFGYPVED--ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
           + E II   N A   + GY   +   L          +    +  Y  + L+  +    E
Sbjct: 602 DSEQII--CNPAYYSMLGYKTNEFPALVSTIDELSHPDDRIRVEEYRAQYLADPV-GAYE 658

Query: 527 KITLGSTKEEKLLSL--RIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKE 581
                  K      +  R  + +            T  DI+  K  +  L  AK+ AE  
Sbjct: 659 IEFRMLGKNGGYHWVLSRGRVVEFTAEGQPKRMLGTHKDITRHKSNEVALLEAKQDAELA 718

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
           + +KS+FLA +SHEIRTP+ AIIG  ++ +          +  +Y      S   +L I+
Sbjct: 719 NLYKSEFLANMSHEIRTPMNAIIGMLQLAQRTSLTA----QQKDYLEKAGFSAQSLLRII 774

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-AD 700
           ND+LD SKIE+GK+ L   P  LD+ +  A+ L  L A E+ + +          IL  D
Sbjct: 775 NDILDFSKIEAGKLELERVPFPLDKVLDHALDLNALKAQEQGVELLLYAPVTAGLILKGD 834

Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE------VILRVRDTGVGMTNYELE 754
              + Q+ +N+LSNA+ FT SG    I        E      +   VRDTG+G+   + +
Sbjct: 835 PLRLGQVLINLLSNAVKFTQSG---EIELGCEDVGERDHRITLKFWVRDTGIGIGKDQQD 891

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           K    F Q   S   +  GTGLGL ++K +V    GK  + S    G+      
Sbjct: 892 KLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGKMQVQSELGVGSTFSFTI 945



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 48/347 (13%), Positives = 100/347 (28%), Gaps = 30/347 (8%)

Query: 9   NPEDILTSNCKGNTQDLSK--KKIDNGFE-----TEKSKKENPCHDSFEQSNFTDQNQES 61
           +P   L S+ +G +Q+  K  +KI  G+E       +  +EN  +           ++  
Sbjct: 380 SPASRLLSHLEGCSQEPRKPPEKITRGWEPWFLLVSRIFEENKQYTHHLAEQNKRLDKLV 439

Query: 62  VSNTNYLDSENTFVFDP--------IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM 113
              T  L                          +  D  G     ++   + +G    +M
Sbjct: 440 ARRTERLKDTTERREREYALLRSLLDSIPEAIVFK-DKEGNYLGCNKAAERMLGYTESEM 498

Query: 114 IGMRLCDVSDIL-HIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172
           IG+   D++     I        +LK +     +     +E     V +D   LP Y+R 
Sbjct: 499 IGLSSEDLTSPEMGIRIRAEDEQVLKDRTPLRYQE---KVELAGKPVLLDTLKLPFYNRR 555

Query: 173 REFSGFRGFGIVHVN-RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231
            E  G     +     R       L    ++    +  ++ G      +   I    +  
Sbjct: 556 GELQGL--IAVWRDVTREYESAEQLRLSEERYHLAMDAVEDGLWDWYLDSEQIICNPAYY 613

Query: 232 PHLRMK----NKVSSLTEYYAHKDDVLKTEKYPL--LTSEESSLPEQEDFHTINLNQYTK 285
             L  K      + S  +  +H DD ++ E+Y    L     +   +      N   +  
Sbjct: 614 SMLGYKTNEFPALVSTIDELSHPDDRIRVEEYRAQYLADPVGAYEIEFRMLGKNGGYHWV 673

Query: 286 KQYFGTLQ-NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI 331
                 ++     +    L      +     +       +  +   +
Sbjct: 674 LSRGRVVEFTAEGQPKRMLGTHKDITRHKSNEVALLEAKQDAELANL 720


>gi|330503188|ref|YP_004380057.1| putative sensory box histidine kinase/response regulator
           [Pseudomonas mendocina NK-01]
 gi|328917474|gb|AEB58305.1| putative sensory box histidine kinase/response regulator
           [Pseudomonas mendocina NK-01]
          Length = 1230

 Score =  364 bits (934), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 112/642 (17%), Positives = 222/642 (34%), Gaps = 31/642 (4%)

Query: 183 IVHVNRVDNDPRALGKRLDKKFSH------LHEIKKGHSSVEKEKYDIFSQQSPPPHLRM 236
           ++    + +  +A  + L   F          +      S  +    +F           
Sbjct: 253 LLRYRHMSHQLKASEQHLRSIFDTALDAIITVDHTGTLRSANRAVLRLFGWTPEELVGLH 312

Query: 237 KNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS 296
            + +         +  V    +   LT                              +  
Sbjct: 313 MSTLVPARLIDKVEGLVADYLRTGQLTMMSGEQELVCLTREGEEKPVRISVGITHAGSRP 372

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN---LFYANPSFLLLTK 353
                         +       E      +   P   F         + + + +   LT 
Sbjct: 373 LFVVFVADISERQHMEMALRRSEQQYRSLISNIPGVSFRCLLDRNWSMLFISDAVEKLTG 432

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
           Y + D I     ++ L              V+    +        RL        +   +
Sbjct: 433 YSADDFISRRCSIADLYHPDDYQPTA--DQVVAAIEEGRNYTVEYRLFD---REGHEHWI 487

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
                   ++       +G+  +  +T+    + E +V    +I +A    +   + +G 
Sbjct: 488 WESGSAVCDEQGVPRWIDGVLIDQTETKRRNAEYEGKVT---AISKAM--ALVEFDLDGN 542

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
           IL  N     LFGY  E+++     +F         + Y      L   Q          
Sbjct: 543 ILEINDNALALFGYDREEVVGHHHAMFCAPE-LVASDAYREVWAELRAGQFRTGEYRRLA 601

Query: 534 KEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
           K  + + ++     +  +            D++  +  +  L  A+  AE  ++ +S FL
Sbjct: 602 KGGREVWIQASYNPILDTDGKPFKVVKLATDLTPRRVMELDLRAARDRAEAAAAARSSFL 661

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
           A +SHEIRTP+ AIIGF++++      P        + + +  S   +L ++ND+LD +K
Sbjct: 662 ANMSHEIRTPMNAIIGFTDLLLETPLSP----DQRRHLSTVQHSSRSLLGLLNDILDTAK 717

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIA 708
           ++ G + L     SL E   + ++  +L A  K + +   + + +      D   ++Q+ 
Sbjct: 718 LDRGAIELEQLDFSLRELCEQVVATQRLTAESKGLQLHLDYPSTVGDFFSGDPLRLQQVL 777

Query: 709 LNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
            N+L NA+ FT  G ++ +  +      + L V+DTG+G+    LEK  +PF Q   S  
Sbjct: 778 TNLLGNAVKFTQQG-EVRLKVSGEP-GAMRLAVKDTGIGIAADRLEKIFEPFAQADASMS 835

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            R  GTGLG  +++ +V+   G+  + ST  +G+   +  PL
Sbjct: 836 RRFGGTGLGTTISRQLVELMGGRLKVESTEGQGSCFSVELPL 877



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 42/370 (11%), Positives = 103/370 (27%), Gaps = 21/370 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQN--TWYG 145
           +D  G L+  +  + +  G    +++G+ +  +     ID     + D L+        G
Sbjct: 284 VDHTGTLRSANRAVLRLFGWTPEELVGLHMSTLVPARLIDKVEGLVADYLRTGQLTMMSG 343

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +  L  +       P+ ++    ++ +R          V             +R ++++ 
Sbjct: 344 EQELVCLTREGEEKPVRISVGITHAGSRPL----FVVFVADISERQHMEMALRRSEQQYR 399

Query: 206 HLHEIKKGHSS--VEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYA---HKDDVLKTEK 258
            L     G S   +    + +         L     +   S     A   H DD   T  
Sbjct: 400 SLISNIPGVSFRCLLDRNWSMLFISDAVEKLTGYSADDFISRRCSIADLYHPDDYQPTAD 459

Query: 259 YPLLTSEE-SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
             +   EE  +   +        +++   +    + +               + +   + 
Sbjct: 460 QVVAAIEEGRNYTVEYRLFDREGHEHWIWESGSAVCDEQGVPRWIDGVLIDQTETKRRNA 519

Query: 318 GENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
                   + K          GN+   N + L L  Y   + +   G    +  AP+L  
Sbjct: 520 EYEGKVTAISKAMALVEFDLDGNILEINDNALALFGYDREEVV---GHHHAMFCAPELVA 576

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
           ++A + V              R           + +        +   +      +  + 
Sbjct: 577 SDAYREVWAELRAGQFRTGEYRRLA---KGGREVWIQASYNPILDTDGKPFKVVKLATDL 633

Query: 438 VDTRINKRKM 447
              R+ +  +
Sbjct: 634 TPRRVMELDL 643



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/331 (10%), Positives = 79/331 (23%), Gaps = 21/331 (6%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI--DPNNHIGDLLKRQNTWYGKT 147
           D  G + EI++      G    +++G           +  D    +   L+      G+ 
Sbjct: 538 DLDGNILEINDNALALFGYDREEVVGHHHAMFCAPELVASDAYREVWAELRAGQFRTGEY 597

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                 G    V I  +  PI   + +      F +V +       R +   L       
Sbjct: 598 RRLAKGGR--EVWIQASYNPILDTDGKP-----FKVVKLATDLTPRRVMELDLRAARDRA 650

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
                  SS      ++  +   P +  +      L    +       +       S   
Sbjct: 651 EAAAAARSSFL---ANMSHEIRTPMNAIIGFTDLLLETPLSPDQRRHLSTVQHSSRSLLG 707

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
            L +  D   ++      +Q   +L+   ++                  +  +   +   
Sbjct: 708 LLNDILDTAKLDRGAIELEQLDFSLRELCEQVVATQRLTAESKGLQLHLDYPSTVGDFFS 767

Query: 328 KCPIP---FFVYSHGNLFYANPSFLLLTKYK------SVDDIEIAGGLSTLLDAPKLSDN 378
             P+          GN         +  K         +   +   G++           
Sbjct: 768 GDPLRLQQVLTNLLGNAVKFTQQGEVRLKVSGEPGAMRLAVKDTGIGIAADRLEKIFEPF 827

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
                 M  R   T +  +     ++     
Sbjct: 828 AQADASMSRRFGGTGLGTTISRQLVELMGGR 858


>gi|254413229|ref|ZP_05027000.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196179849|gb|EDX74842.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 1366

 Score =  364 bits (934), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 120/683 (17%), Positives = 240/683 (35%), Gaps = 67/683 (9%)

Query: 189  VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA 248
               + + + +  D+ F+   +I    +          + +          K     E+  
Sbjct: 467  ELRERQHIQQERDRLFNLSVDILGIVNFEGYFIDVNPAFEKILGISSDAIKAQPFIEWVH 526

Query: 249  HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
             +D      +   L S  +    +  + + + +                           
Sbjct: 527  PEDREATQAQMRKLASGITIKSFENRYCSQDGSYQWFSWTAVPFVQERLVYVVAHDITER 586

Query: 309  PSLSAYFDEGENLTPETVDKC-PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
                    E E       D      ++    G+  Y +PS   +T Y++ + +     L 
Sbjct: 587  KQAEQALQESEQRFRTVADFTYDWEYWRDPDGSFIYVSPSCQRITGYQAEEFLNDPSLLE 646

Query: 368  TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
             ++       ++  +     R         +    +     +   +        ++    
Sbjct: 647  AII-----HPDDRQRMTKHIREQLDNPHVYSTDFRLITRTGSIRWIAHACQPVYSKDRRW 701

Query: 428  MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
            + Q     +  D +  +  +     Q  +++E + D +A  + +   L  N A+ ++   
Sbjct: 702  LGQRASNRDISDRKQTEEALYYREQQFRALVENSPDIVARFDHQLRHLYVNPAIEQVAKC 761

Query: 488  PVEDILRKPFTVF-LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
              +  + K      +  +     +  L  + +    Q +E      +K  K    RI+ +
Sbjct: 762  SAQTFIGKTNEELGMPPDKAQFWDEALRSVFTTGQEQLIEFDFPT-SKGMKFFHSRIVPE 820

Query: 547  KLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
                           DI+  K+ +  L  AK  AE  +  KS+FLA +SHE+RTPL  I+
Sbjct: 821  LNADGTIRSVLSVTRDITAHKEIEVALQQAKDAAEVANRAKSEFLATMSHELRTPLNGIL 880

Query: 605  GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
            G++++++N            E  N I   G  +L ++ND+LD SKIES K+ L      L
Sbjct: 881  GYTKLLQND---TNLTETQRESLNIIYHCGEHLLTLINDILDFSKIESQKLELDPSEFHL 937

Query: 665  DEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSG- 722
               +S   SL +L A +K I       + +P+ ++AD + ++Q+ +N+LSNA+ FT  G 
Sbjct: 938  PTFLSSISSLFRLRATQKEIDFTYKLLSPLPQNVIADEKRLRQVLINLLSNAVKFTDQGS 997

Query: 723  -----GQII---------------------ISTTHTSN---------------------- 734
                 G +                      +  + T N                      
Sbjct: 998  VTFKVGYVEDVETCHGASCHGASCHGASQCVGASLTDNVTQETANVTKPARLKERDILSQ 1057

Query: 735  ---EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
                ++  +V DTG+G+   +L +   PF Q+ + +    EGTGLGL +++ +V      
Sbjct: 1058 SPITKIRFQVEDTGIGIDPQQLSEIFLPFHQV-SDRTHAVEGTGLGLAISQKLVQLMDST 1116

Query: 792  FYIFSTPAKGTLIEIIFPLYDTS 814
              + S   +G++      L D S
Sbjct: 1117 IQVSSILGQGSVFWFDLELSDVS 1139



 Score = 99.3 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 44/397 (11%), Positives = 101/397 (25%), Gaps = 78/397 (19%)

Query: 322 TPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGG----LSTLLDAPKL- 375
                ++      +    G     NP+   L      + +         L          
Sbjct: 13  FQALFNQALDAMAIADDQGQYVEVNPAACRLFGLSREELLGCRISDFTDLEFDFQEAWRI 72

Query: 376 --SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
                       L R D T                            A           I
Sbjct: 73  FLEQGQVKGEFRLRRRDGTIRETEY---------------------AATANVIPHRHLSI 111

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
             +  D +  + ++     +L   L A   GI   N     +  +     LFG       
Sbjct: 112 LRDITDRKQVEAELRQSEERLNLALYAAQMGIWDWNLLTNQIRWSEHHEVLFGLTPGTYD 171

Query: 494 R--KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
              K F   +  +    +        S   +   +        +  +  +    K +   
Sbjct: 172 GTYKTFEACIHPDDREAVKQAANR--SQLEQHEYDHEFRVVWSDGSIHWIEGKGKFIYDQ 229

Query: 552 SC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL----ARVSHEIRTPLTAI 603
           +        T+ DIS+ KQ + ++       E+    ++  L      ++HEI       
Sbjct: 230 TGQAVRMLGTVIDISDRKQAETQIYRLNAELEQRVIERTQELQRTNDNLNHEI------- 282

Query: 604 IGFSEVIKNQRFGPLGNPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
                             R   E A ++      ++  +          + ++    + +
Sbjct: 283 ----------------QERQRAEAAVHLQAQQERLISAI----------AQQI---RQSL 313

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA 699
            L++ ++  ++ VQ      +++I  +  +    ++A
Sbjct: 314 DLNQILNTTVTQVQQLLACDQVVIYQTHDDGTGNLVA 350



 Score = 94.7 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 55/486 (11%), Positives = 132/486 (27%), Gaps = 43/486 (8%)

Query: 96  KEISEELPKTIGNYAFKMIG--MRLCDVSDILHIDPNNHIG--DLLKRQNTWYGKTTLWP 151
              SE      G       G              +          L++    +    +W 
Sbjct: 153 IRWSEHHEVLFGLTPGTYDGTYKTFEACIHPDDREAVKQAANRSQLEQHEYDHEFRVVW- 211

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
            +G+     I+     IY +  +    R  G V              RL+ +       +
Sbjct: 212 SDGSI--HWIEGKGKFIYDQTGQ--AVRMLGTVIDISDRKQAETQIYRLNAELEQRVIER 267

Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271
                   +  +          ++ + +  +     A ++ ++      +  S + +   
Sbjct: 268 TQELQRTNDNLNH--------EIQERQRAEAAVHLQAQQERLISAIAQQIRQSLDLNQIL 319

Query: 272 QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI 331
                 +       +       ++   +    +  +  S+       E + P    +   
Sbjct: 320 NTTVTQVQQLLACDQVVIYQTHDDGTGNLVAQALASDGSVPQEHSLPELIFPPACHQ--- 376

Query: 332 PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR 391
             F  S G    A+     +     + D     G+ + L  P L +      ++ +    
Sbjct: 377 --FYCSGGIHTIADVKQDDIVPC--LADTVRRFGVKSKLVMPILENETLWGLLIAHH--- 429

Query: 392 TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV 451
                +       W  E   ++T        Q                    ++ ++ E 
Sbjct: 430 ----YTTIRQWQPWEAELLCSLTTQVTIAIQQAELYSQLQA-------ELRERQHIQQER 478

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
            +L      + D + I+N EG  +  N A  K+ G   + I  +PF  ++          
Sbjct: 479 DRL---FNLSVDILGIVNFEGYFIDVNPAFEKILGISSDAIKAQPFIEWVHPEDREATQA 535

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571
            + ++ S    ++        +++                    +  HDI+E KQ +  L
Sbjct: 536 QMRKLASGITIKSF--ENRYCSQDGSYQWFSWTAVPFVQERLVYVVAHDITERKQAEQAL 593

Query: 572 SHAKKI 577
             +++ 
Sbjct: 594 QESEQR 599



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/372 (8%), Positives = 78/372 (20%), Gaps = 25/372 (6%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151
            GY  +++    K +G  +  +      +       +        L    T       + 
Sbjct: 495 EGYFIDVNPAFEKILGISSDAIKAQPFIEWVHPEDREATQAQMRKLASGITIKSFENRYC 554

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
            +  +        A+P + + R       + + H            +  +++F  + +  
Sbjct: 555 SQDGSYQ-WFSWTAVP-FVQERLV-----YVVAHDITERKQAEQALQESEQRFRTVADFT 607

Query: 212 KGHSSVEKEKYDIFSQQSP------PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
                                           N  S L       D    T+        
Sbjct: 608 YDWEYWRDPDGSFIYVSPSCQRITGYQAEEFLNDPSLLEAIIHPDDRQRMTKHIREQLDN 667

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE----GENL 321
                      T   +          + +  +      +     S     +E     E  
Sbjct: 668 PHVYSTDFRLITRTGSIRWIAHACQPVYSKDRRWLGQRASNRDISDRKQTEEALYYREQQ 727

Query: 322 TPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
               V+  P     + H     Y NP+   + K  +   I      +  L  P       
Sbjct: 728 FRALVENSPDIVARFDHQLRHLYVNPAIEQVAKCSAQTFIGK---TNEELGMPPDKAQFW 784

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
            + +    +            T     +           + N          +  +    
Sbjct: 785 DEALRSVFTTGQEQLIEFDFPT----SKGMKFFHSRIVPELNADGTIRSVLSVTRDITAH 840

Query: 441 RINKRKMEIEVM 452
           +  +  ++    
Sbjct: 841 KEIEVALQQAKD 852



 Score = 68.1 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 27/263 (10%), Positives = 67/263 (25%), Gaps = 20/263 (7%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D  G   E++    +  G    +++G R+ D +D+           +   Q    G+  L
Sbjct: 28  DDQGQYVEVNPAACRLFGLSREELLGCRISDFTDLEFDFQEA--WRIFLEQGQVKGEFRL 85

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
              +GT             Y+        R   I+          A  ++ +++ +    
Sbjct: 86  RRRDGTIRETE--------YAATANVIPHRHLSILRDITDRKQVEAELRQSEERLNLALY 137

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHL-----RMKNKVSSLTEYYAHKDDV-LKTEKYPLLT 263
             +          +          L        +      E   H DD     +      
Sbjct: 138 AAQMGIWDWNLLTNQIRWSEHHEVLFGLTPGTYDGTYKTFEACIHPDDREAVKQAANRSQ 197

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
            E+     +      + + +  +     + + + ++   L      S     +       
Sbjct: 198 LEQHEYDHEFRVVWSDGSIHWIEGKGKFIYDQTGQAVRMLGTVIDISDRKQAETQIYRLN 257

Query: 324 ETVDKCPIPFFVYSHGNLFYANP 346
             +++      +     L   N 
Sbjct: 258 AELEQR----VIERTQELQRTND 276



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 42/147 (28%), Gaps = 8/147 (5%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMR--LCDVSDILHIDP-NNHIGDLLKRQNTW 143
           W  D  G    +S    +  G  A + +     L  +           HI + L   + +
Sbjct: 613 WR-DPDGSFIYVSPSCQRITGYQAEEFLNDPSLLEAIIHPDDRQRMTKHIREQLDNPHVY 671

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                L    G+  ++    A  P+YS++R + G R                     +++
Sbjct: 672 STDFRLITRTGSIRWIAH--ACQPVYSKDRRWLGQR--ASNRDISDRKQTEEALYYREQQ 727

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSP 230
           F  L E      +    +         
Sbjct: 728 FRALVENSPDIVARFDHQLRHLYVNPA 754


>gi|304410894|ref|ZP_07392511.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183]
 gi|307304935|ref|ZP_07584685.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175]
 gi|304350791|gb|EFM15192.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183]
 gi|306912337|gb|EFN42761.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175]
          Length = 1238

 Score =  364 bits (934), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 124/594 (20%), Positives = 207/594 (34%), Gaps = 46/594 (7%)

Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291
           P  R+ + +   ++      + +     P          E + +           +    
Sbjct: 381 PASRLLSHLEGCSQEPRKPPEKITRGWEPWFLLVSRIFEENKQYTH------HLAEQNKR 434

Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLL 350
           L        E L          Y      L    +D  P    F    GN    N +   
Sbjct: 435 LDKLVARRTERLKDTTERREREYA-----LLRSLLDSIPEAIVFKDKEGNYLGCNKAAER 489

Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
           +  Y   + I ++     L          A    +L             L          
Sbjct: 490 MLGYTESEMIGLSS--EDLTSPEMGIRIRAEDEQVLKDRTPLRYQEKVELA------GKP 541

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA--II 468
           + +  +     N+  E      +  +      +  ++ +   +    ++A  DG+    +
Sbjct: 542 VLLDTLKLPFYNRRGELQGLIAVWRDVTREYESAEQLRLSEERYHLAMDAVEDGLWDWYL 601

Query: 469 NREGIILSTNRAVSKLFGYPVED--ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
           + E II   N A   + GY   +   L          +    +  Y  + L+  +    E
Sbjct: 602 DSEQII--CNPAYYSMLGYKTNEFPALVSTIDELSHPDDRIRVEEYRAQYLADPV-GAYE 658

Query: 527 KITLGSTKEEKLLSL--RIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKE 581
                  K      +  R  + +            T  DI+  K  +  L  AK+ AE  
Sbjct: 659 IEFRMLGKNGGYHWVLSRGRVVEFTAEGQPKRMLGTHKDITRHKSNEVALLEAKQDAELA 718

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
           + +KS+FLA +SHEIRTP+ AIIG  ++ +          +  +Y      S   +L I+
Sbjct: 719 NLYKSEFLANMSHEIRTPMNAIIGMLQLAQRTSLTA----QQKDYLEKAGFSAQSLLRII 774

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-AD 700
           ND+LD SKIE+GK+ L   P  LD+ +  A+ L  L A E+ + +          IL  D
Sbjct: 775 NDILDFSKIEAGKLELERVPFPLDKVLDHALDLNALKAQEQGVELLLYAPVTAGLILKGD 834

Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE------VILRVRDTGVGMTNYELE 754
              + Q+ +N+LSNA+ FT SG    I        E      +   VRDTG+G+   + +
Sbjct: 835 PLRLGQVLINLLSNAVKFTQSG---EIELGCEDVGERDHRITLKFWVRDTGIGIGKDQQD 891

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           K    F Q   S   +  GTGLGL ++K +V    GK  + S    G+      
Sbjct: 892 KLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGKMQVQSELGVGSTFSFTI 945



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 48/347 (13%), Positives = 100/347 (28%), Gaps = 30/347 (8%)

Query: 9   NPEDILTSNCKGNTQDLSK--KKIDNGFE-----TEKSKKENPCHDSFEQSNFTDQNQES 61
           +P   L S+ +G +Q+  K  +KI  G+E       +  +EN  +           ++  
Sbjct: 380 SPASRLLSHLEGCSQEPRKPPEKITRGWEPWFLLVSRIFEENKQYTHHLAEQNKRLDKLV 439

Query: 62  VSNTNYLDSENTFVFDP--------IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM 113
              T  L                          +  D  G     ++   + +G    +M
Sbjct: 440 ARRTERLKDTTERREREYALLRSLLDSIPEAIVFK-DKEGNYLGCNKAAERMLGYTESEM 498

Query: 114 IGMRLCDVSDIL-HIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172
           IG+   D++     I        +LK +     +     +E     V +D   LP Y+R 
Sbjct: 499 IGLSSEDLTSPEMGIRIRAEDEQVLKDRTPLRYQE---KVELAGKPVLLDTLKLPFYNRR 555

Query: 173 REFSGFRGFGIVHVN-RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231
            E  G     +     R       L    ++    +  ++ G      +   I    +  
Sbjct: 556 GELQGL--IAVWRDVTREYESAEQLRLSEERYHLAMDAVEDGLWDWYLDSEQIICNPAYY 613

Query: 232 PHLRMK----NKVSSLTEYYAHKDDVLKTEKYPL--LTSEESSLPEQEDFHTINLNQYTK 285
             L  K      + S  +  +H DD ++ E+Y    L     +   +      N   +  
Sbjct: 614 SMLGYKTNEFPALVSTIDELSHPDDRIRVEEYRAQYLADPVGAYEIEFRMLGKNGGYHWV 673

Query: 286 KQYFGTLQ-NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI 331
                 ++     +    L      +     +       +  +   +
Sbjct: 674 LSRGRVVEFTAEGQPKRMLGTHKDITRHKSNEVALLEAKQDAELANL 720


>gi|217974881|ref|YP_002359632.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS223]
 gi|217500016|gb|ACK48209.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS223]
          Length = 1238

 Score =  363 bits (933), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 124/594 (20%), Positives = 207/594 (34%), Gaps = 46/594 (7%)

Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291
           P  R+ + +   ++      + +     P          E + +           +    
Sbjct: 381 PASRLLSHLEGCSQEPRKPPEKITRGWEPWFLLVSRIFEENKQYTH------HLAEQNKR 434

Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLL 350
           L        E L          Y      L    +D  P    F    GN    N +   
Sbjct: 435 LDKLVARRTERLKDTTERREREYA-----LLRSLLDSIPEAIVFKDKEGNYLGCNKAAER 489

Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
           +  Y   + I ++     L          A    +L             L          
Sbjct: 490 MLGYTESEMIGLSS--EDLTSPEMGIRIRAEDEQVLKDRTPLRYQEKVELA------GKP 541

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA--II 468
           + +  +     N+  E      +  +      +  ++ +   +    ++A  DG+    +
Sbjct: 542 VLLDTLKLPFYNRRGELQGLIAVWRDVTREYESAEQLRLSEERYHLAMDAVEDGLWDWYL 601

Query: 469 NREGIILSTNRAVSKLFGYPVED--ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
           + E II   N A   + GY   +   L          +    +  Y  + L+  +    E
Sbjct: 602 DSEQII--CNPAYYSMLGYKTNEFPALVSTIDELSHPDDRIRVEEYRAQYLADPV-GAYE 658

Query: 527 KITLGSTKEEKLLSL--RIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKE 581
                  K      +  R  + +            T  DI+  K  +  L  AK+ AE  
Sbjct: 659 IEFRMLGKNGGYHWVLSRGRVVEFTAEGQPKRMLGTHKDITRHKSNEVALLEAKQDAELA 718

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
           + +KS+FLA +SHEIRTP+ AIIG  ++ +          +  +Y      S   +L I+
Sbjct: 719 NLYKSEFLANMSHEIRTPMNAIIGMLQLAQRTSLTA----QQKDYLEKAGFSAQSLLRII 774

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-AD 700
           ND+LD SKIE+GK+ L   P  LD+ +  A+ L  L A E+ + +          IL  D
Sbjct: 775 NDILDFSKIEAGKLELERVPFPLDKVLDHALDLNALKAQEQGVELLLYAPVTAGLILKGD 834

Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE------VILRVRDTGVGMTNYELE 754
              + Q+ +N+LSNA+ FT SG    I        E      +   VRDTG+G+   + +
Sbjct: 835 PLRLGQVLINLLSNAVKFTQSG---EIELGCEDVGERDHRITLKFWVRDTGIGIGKDQQD 891

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           K    F Q   S   +  GTGLGL ++K +V    GK  + S    G+      
Sbjct: 892 KLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGKMQVQSELGVGSTFSFTI 945



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 48/347 (13%), Positives = 100/347 (28%), Gaps = 30/347 (8%)

Query: 9   NPEDILTSNCKGNTQDLSK--KKIDNGFE-----TEKSKKENPCHDSFEQSNFTDQNQES 61
           +P   L S+ +G +Q+  K  +KI  G+E       +  +EN  +           ++  
Sbjct: 380 SPASRLLSHLEGCSQEPRKPPEKITRGWEPWFLLVSRIFEENKQYTHHLAEQNKRLDKLV 439

Query: 62  VSNTNYLDSENTFVFDP--------IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM 113
              T  L                          +  D  G     ++   + +G    +M
Sbjct: 440 ARRTERLKDTTERREREYALLRSLLDSIPEAIVFK-DKEGNYLGCNKAAERMLGYTESEM 498

Query: 114 IGMRLCDVSDIL-HIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172
           IG+   D++     I        +LK +     +     +E     V +D   LP Y+R 
Sbjct: 499 IGLSSEDLTSPEMGIRIRAEDEQVLKDRTPLRYQE---KVELAGKPVLLDTLKLPFYNRR 555

Query: 173 REFSGFRGFGIVHVN-RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231
            E  G     +     R       L    ++    +  ++ G      +   I    +  
Sbjct: 556 GELQGL--IAVWRDVTREYESAEQLRLSEERYHLAMDAVEDGLWDWYLDSEQIICNPAYY 613

Query: 232 PHLRMK----NKVSSLTEYYAHKDDVLKTEKYPL--LTSEESSLPEQEDFHTINLNQYTK 285
             L  K      + S  +  +H DD ++ E+Y    L     +   +      N   +  
Sbjct: 614 SMLGYKTNEFPALVSTIDELSHPDDRIRVEEYRAQYLADPVGAYEIEFRMLGKNGGYHWV 673

Query: 286 KQYFGTLQ-NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI 331
                 ++     +    L      +     +       +  +   +
Sbjct: 674 LSRGRVVEFTAEGQPKRMLGTHKDITRHKSNEVALLEAKQDAELANL 720


>gi|17228038|ref|NP_484586.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120]
 gi|17129887|dbj|BAB72500.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120]
          Length = 573

 Score =  363 bits (933), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 112/424 (26%), Positives = 198/424 (46%), Gaps = 22/424 (5%)

Query: 405 WNRENSLAMTFIPFEKANQ---------FPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
           W     + + F       +                  +  E  +  I +  +     Q  
Sbjct: 149 WVGGRLVGVVFHEHCGELRQWTVDEENFAGSIADFVSLAMETKERNIAQEALRKSEAQFR 208

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN----- 510
           +I E +S GI +++ +  I+  N A+ ++ GY  E++  K FT ++ Q    V       
Sbjct: 209 AIFELSSIGIGLVDMKAQIVDANPALCQILGYQREELCGKSFTDYISQQRGDVERYKQLM 268

Query: 511 -HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWK 565
                +      +  LE       ++ +L+  R+ +  +P SS     +   + DI+E K
Sbjct: 269 TEICIDAQQRHEKPHLEIERAFLHRDGRLVWARLSVSVIPGSSGEPEYFLAIIDDITERK 328

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           Q + KL  ++  AE  S  KS+FLA +SHE+RTPL AI+G S++++ +  G L N +  E
Sbjct: 329 QTEMKLRASQAAAEAGSRAKSEFLATMSHELRTPLNAIMGLSQLLQQEIVGSL-NEKQQE 387

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           Y N I  SG  +L ++ND+LD+SK+E+GK  L   P+ + +  ++ +  V+  A  K + 
Sbjct: 388 YINCIYSSGEHLLALINDILDLSKVEAGKEELFLIPLLVIDVCNDVLLTVRDRAISKGLK 447

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +           +AD R +KQ+ LN+L+NAI FT  G ++ +         +   + DTG
Sbjct: 448 LTQEIDPEANICIADDRRIKQMLLNLLTNAIKFTSVG-EVSLIVKRVPEG-INFIISDTG 505

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+ + +     +PF Q+ +    + EGTGLGL L + +   + G   + ST   G+   
Sbjct: 506 IGIDSNQFPLLFEPFKQLDSRLNRQYEGTGLGLALTRKLARLHGGDVTVTSTVGVGSQFT 565

Query: 806 IIFP 809
           +  P
Sbjct: 566 LFLP 569



 Score = 55.4 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/321 (10%), Positives = 79/321 (24%), Gaps = 31/321 (9%)

Query: 48  SFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRF--TWN--------IDAHGYLKE 97
           + ++ NF     + VS        N           +F   +         +D    + +
Sbjct: 170 TVDEENFAGSIADFVSLAMETKERNIAQEALRKSEAQFRAIFELSSIGIGLVDMKAQIVD 229

Query: 98  ISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN---------HIGDLLKRQNTWYGKTT 148
            +  L + +G    ++ G    D       D                    +     +  
Sbjct: 230 ANPALCQILGYQREELCGKSFTDYISQQRGDVERYKQLMTEICIDAQQRHEKPHLEIERA 289

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +G  ++  + ++ +P    + E   F    I+             +          
Sbjct: 290 FLHRDGRLVWARLSVSVIP--GSSGEPEYF--LAIIDDITERKQTEMKLRASQAAAEAGS 345

Query: 209 EIKKGHSSVEKEKYDIFSQQS-PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
             K    +    +             L  +  V SL E      + + +    LL     
Sbjct: 346 RAKSEFLATMSHELRTPLNAIMGLSQLLQQEIVGSLNEKQQEYINCIYSSGEHLLALIND 405

Query: 268 SL-------PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
            L        ++E F    L          T+++ +      L+    P  +    +   
Sbjct: 406 ILDLSKVEAGKEELFLIPLLVIDVCNDVLLTVRDRAISKGLKLTQEIDPEANICIADDRR 465

Query: 321 LTPETVDKCPIPFFVYSHGNL 341
           +    ++         S G +
Sbjct: 466 IKQMLLNLLTNAIKFTSVGEV 486


>gi|254412177|ref|ZP_05025952.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196181143|gb|EDX76132.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 1263

 Score =  363 bits (933), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 123/851 (14%), Positives = 269/851 (31%), Gaps = 136/851 (15%)

Query: 92   HGYLKEISEELPKTIGNYAFKM--IGMRL-CDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
                   +  + + +G     +  +G  L   +     +     +   ++R  T   +  
Sbjct: 199  EQRNIYSNRTITEILGYSPEAVQAMGETLLSQLMHPDDL---AKLSAQIERLATASDREI 255

Query: 149  ----LWPIEGTNLYVPIDLAALPIYSR--NREFSGFRGFGIV------------------ 184
                         +  +  +   ++++  + +     G                      
Sbjct: 256  IETEYRMRRANGEWCWLY-SRDTVFTKTPDGKPQQILGVATDITTIKLAEAKILSLNAEL 314

Query: 185  -------------------HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF 225
                                  R         +  +++F  + E      ++      I 
Sbjct: 315  EQRVKERTEALQQANEELKREIRDRQQAEKTLRESEEQFRSIFENVSVGIALLDLDGYIL 374

Query: 226  SQQSPP--PHLRMKNKVSSLTEYYAHKDDVLKTEKY---PLLTSEESSLPEQEDFHTINL 280
            +             +++  +        + L  +      +L  + ++    + +   + 
Sbjct: 375  TANEANCRFLGYSPDEIVGMHFSGLTHPEDLSLDTDLFDSILCGKRTNYTIDKRYLRQDG 434

Query: 281  NQYTKKQYFGTLQNNSKESF----EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY 336
                 +     +++                +   +     E +          P+   + 
Sbjct: 435  ACVWGRITVSMIKDEQSSPRYIAVVCEDINDRKQMEEELRESQQKYKTLFKIFPMGISIT 494

Query: 337  S-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIA 395
               GN+  AN +   +      +                             R+      
Sbjct: 495  DKGGNIIEANSASEEILGLSRQEQTSRTYDAPNWSIIRLDGTPMPASEFASVRALTENRV 554

Query: 396  ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
                   I   ++    ++                     +  D +  ++ +     +  
Sbjct: 555  IENMEMGILKAKDKITWISVTAAPIPLAD---YGVAIAYIDVSDRKRMEKALRESQQKYK 611

Query: 456  SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR----KPFTVFLEQNTPSVMNH 511
            ++ +    GI+I +++G ++  N A  K+ G  V D +      P    +  +   +   
Sbjct: 612  TLFQILPIGISITDKQGNLIEANAASEKILGLSVSDRINAKYVTPQLNVIRPDGTVMPRS 671

Query: 512  YLTEILSLDLRQTL-EKITLGSTKEEKLLSLRIIIKKLP-FSSCYSLTMHDISEWKQEKN 569
                + +L   Q +          + K+  +      +P   S   +   DI+E KQ + 
Sbjct: 672  EFANVKALIQNQVIKNHEAGIVKPDGKITWISATASPIPLRDSGVVVAYLDITERKQAEE 731

Query: 570  KLSHAKKIAEK-------ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
             L  AK++A +        +  KS+FL  +SHE+RTPL  I+G+++++K      L NP 
Sbjct: 732  ALQQAKEVAVREAKRSEIANRAKSEFLTNMSHELRTPLNGILGYAQLLKQD--TTLTNP- 788

Query: 623  YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                 N I + G  +L ++ND+LD++KIE+ KM L+     L   +     L QL A +K
Sbjct: 789  QHHNLNIIHQCGEHLLTLINDILDLAKIEAQKMELYPTEFHLPNFLHSLADLFQLRAQQK 848

Query: 683  RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV---- 737
             I+      + +P  ++AD + ++Q+  N+LSNAI FT  G ++  + +  +  +V    
Sbjct: 849  DIIFTYQVLSPLPNGVIADNKRLRQVLCNLLSNAIKFTDRG-EVTFTVSVVNRTDVKSAC 907

Query: 738  ------------------------------------------------ILRVRDTGVGMT 749
                                                              +++DTGVG+ 
Sbjct: 908  RNSAVESKLSQSGFCTNLTSNSQNQVPKPTPTNPVYSRLAKDQHCKTIRFQIKDTGVGID 967

Query: 750  NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE--II 807
              +L K   PF Q+ +      EGTGLGL +++ ++     +  + S P KG+     I 
Sbjct: 968  LSQLTKIFLPFHQV-SDHSHATEGTGLGLAISQKLIQLMGSEIKVKSIPGKGSTFWFDIN 1026

Query: 808  FPLYDTSHPHD 818
             PL    H  +
Sbjct: 1027 LPLVSGWHEPN 1037



 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 56/602 (9%), Positives = 155/602 (25%), Gaps = 88/602 (14%)

Query: 38  KSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKE 97
                NP       +  +   QE   N+        F        +      D+ G    
Sbjct: 34  PYSASNPSQSQP-ANPVSCPFQEQKGNSEACAFLAIFNDSLDAMVI-----ADSQGKFLR 87

Query: 98  ISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNL 157
           ++    +       +++   + + +    I  ++    L +R+ T+     LW  +GT  
Sbjct: 88  VNRAAGELFKLSEDQLLHRTILETTP---ISLHDWCHFLAQRRITYNF--CLWRADGTQR 142

Query: 158 YVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSV 217
            V ++  A  +   +          ++             ++       + +       +
Sbjct: 143 DVELEGTANMLPDHH--------LLVLRDVTEYQQAEKALQQSQNFVEQISQSISAIVYI 194

Query: 218 ----------EKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
                                SP     M   + S   +      +    +     S+  
Sbjct: 195 YDIIEQRNIYSNRTITEILGYSPEAVQAMGETLLSQLMHPDDLAKLSAQIERLATASDRE 254

Query: 268 SLPEQEDFHTINLNQYTKKQYFG-----------------------------------TL 292
            +  +      N                                               L
Sbjct: 255 IIETEYRMRRANGEWCWLYSRDTVFTKTPDGKPQQILGVATDITTIKLAEAKILSLNAEL 314

Query: 293 QNNSKESFEYLS---------HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLF 342
           +   KE  E L           R+         E E       +   +   +    G + 
Sbjct: 315 EQRVKERTEALQQANEELKREIRDRQQAEKTLRESEEQFRSIFENVSVGIALLDLDGYIL 374

Query: 343 YANPSFLLLTKYKSVDDIE-IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401
            AN +      Y   + +     GL+         D +    +            +    
Sbjct: 375 TANEANCRFLGYSPDEIVGMHFSGLTH------PEDLSLDTDLFDSILCGKRTNYTIDKR 428

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
            ++ +    +          ++         +  +  D +  + ++     +  ++ +  
Sbjct: 429 YLRQDGA-CVWGRITVSMIKDEQSSPRYIAVVCEDINDRKQMEEELRESQQKYKTLFKIF 487

Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF----TVFLEQNTPSVMNHYLTEIL 517
             GI+I ++ G I+  N A  ++ G   ++   + +       +  +   +       + 
Sbjct: 488 PMGISITDKGGNIIEANSASEEILGLSRQEQTSRTYDAPNWSIIRLDGTPMPASEFASVR 547

Query: 518 SLDLRQTLE-KITLGSTKEEKLLSLRIIIKKLP-FSSCYSLTMHDISEWKQEKNKLSHAK 575
           +L   + +E         ++K+  + +    +P      ++   D+S+ K+ +  L  ++
Sbjct: 548 ALTENRVIENMEMGILKAKDKITWISVTAAPIPLADYGVAIAYIDVSDRKRMEKALRESQ 607

Query: 576 KI 577
           + 
Sbjct: 608 QK 609



 Score =  102 bits (254), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 51/462 (11%), Positives = 124/462 (26%), Gaps = 29/462 (6%)

Query: 10  PEDILTSNCKGNTQDLSKKKID--NGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNY 67
           P+ IL       T  L++ KI   N    ++ K+         +    +      +    
Sbjct: 287 PQQILGVATDITTIKLAEAKILSLNAELEQRVKERTEALQQANEELKREIRDRQQAEKTL 346

Query: 68  LDSENTFV--FDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL 125
            +SE  F   F+ +   +     +D  GY+   +E   + +G    +++GM    ++   
Sbjct: 347 RESEEQFRSIFENVSVGIAL---LDLDGYILTANEANCRFLGYSPDEIVGMHFSGLTHPE 403

Query: 126 HIDPNNHIGD--LLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI 183
            +  +  + D  L  ++  +         +G  ++  I ++   I         +    +
Sbjct: 404 DLSLDTDLFDSILCGKRTNYTIDKRYLRQDGACVWGRITVSM--IKDEQSS-PRYIAV-V 459

Query: 184 VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL 243
                         +   +K+  L +I     S+  +  +I    S    +   ++    
Sbjct: 460 CEDINDRKQMEEELRESQQKYKTLFKIFPMGISITDKGGNIIEANSASEEILGLSRQEQT 519

Query: 244 TEYYAHKDDVLKTEK-YPLLTSE---ESSLPEQEDFHTINLNQYTKKQYFG--------T 291
           +  Y   +  +      P+  SE     +L E      + +     K             
Sbjct: 520 SRTYDAPNWSIIRLDGTPMPASEFASVRALTENRVIENMEMGILKAKDKITWISVTAAPI 579

Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLL 350
              +   +  Y+   +   +     E +          PI   +    GNL  AN +   
Sbjct: 580 PLADYGVAIAYIDVSDRKRMEKALRESQQKYKTLFQILPIGISITDKQGNLIEANAASEK 639

Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
           +      D I        L                  ++             I       
Sbjct: 640 ILGLSVSDRINAKYVTPQLNVIRPDGTVMPRSEFANVKALIQNQVIKNHEAGIVKPDGKI 699

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
             ++        +            +  + +  +  ++    
Sbjct: 700 TWISATASPIPLRDS---GVVVAYLDITERKQAEEALQQAKE 738



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 48/398 (12%), Positives = 121/398 (30%), Gaps = 54/398 (13%)

Query: 327 DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK----LSDNNAIK 382
           D         S G     N +   L K      +      +T +        L+      
Sbjct: 71  DSLDAMVIADSQGKFLRVNRAAGELFKLSEDQLLHRTILETTPISLHDWCHFLAQRRITY 130

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
              L+R+D T                + L +                      +  + + 
Sbjct: 131 NFCLWRADGTQRDVELEGTANMLPDHHLLVL---------------------RDVTEYQQ 169

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRK---PFT 498
            ++ ++     +  I ++ S  + I +  E   + +NR ++++ GY  E +        +
Sbjct: 170 AEKALQQSQNFVEQISQSISAIVYIYDIIEQRNIYSNRTITEILGYSPEAVQAMGETLLS 229

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR-----IIIKKLPFSSC 553
             +  +  + ++  +  + +   R+ +E          +   L                 
Sbjct: 230 QLMHPDDLAKLSAQIERLATASDREIIETEYRMRRANGEWCWLYSRDTVFTKTPDGKPQQ 289

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
                 DI+  K  + K+       E+    +++ L + + E++            I+++
Sbjct: 290 ILGVATDITTIKLAEAKILSLNAELEQRVKERTEALQQANEELK----------REIRDR 339

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
           +          E    I  + ++ + +++  LD   + + + N  F   S DE V     
Sbjct: 340 QQAEKTLRESEEQFRSIFENVSVGIALLD--LDGYILTANEANCRFLGYSPDEIVG---M 394

Query: 674 LVQLYANEKRILIRTSFANNIP-----RILADLRSVKQ 706
                 + + + + T   ++I          D R ++Q
Sbjct: 395 HFSGLTHPEDLSLDTDLFDSILCGKRTNYTIDKRYLRQ 432



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 74/206 (35%), Gaps = 30/206 (14%)

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
             +I   + D + I + +G  L  NRA  +LF    + +L +        +     +   
Sbjct: 65  FLAIFNDSLDAMVIADSQGKFLRVNRAAGELFKLSEDQLLHRTILETTPISLHDWCHFLA 124

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH 573
                   R T       +   ++ + L      LP    + L + D++E++Q +  L  
Sbjct: 125 QR------RITYNFCLWRADGTQRDVELEGTANMLPD--HHLLVLRDVTEYQQAEKALQQ 176

Query: 574 AKKIAEKESSHKSDFLARVSHEI---------RTPLTAIIGFS--------EVIKNQRFG 616
           ++   E+ S   S  +    ++I         RT +T I+G+S        E + +Q   
Sbjct: 177 SQNFVEQISQSISAIVYI--YDIIEQRNIYSNRT-ITEILGYSPEAVQAMGETLLSQLMH 233

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVN 642
           P    +       +  + +   +I+ 
Sbjct: 234 PDDLAKLSAQIERLATASDR--EIIE 257


>gi|303247235|ref|ZP_07333509.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
 gi|302491394|gb|EFL51282.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
          Length = 1136

 Score =  363 bits (933), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 133/782 (17%), Positives = 243/782 (31%), Gaps = 88/782 (11%)

Query: 100 EELPKTIGNYAFKMIGMR---LCDVSDILHIDPNNHI-GDLLKRQNTWYGKTTLWPIE-- 153
            E+       A +++        D + I  + P   I    L            W  +  
Sbjct: 76  PEITAMRPIPAERLLIRVKEFFSDFATISLLSPGGTIVASNLPTGREINYGDRPWVRQAL 135

Query: 154 ------------GTNLYVPIDLAALPIYSRNREFSGF-------RGF-GIVHVNRVDNDP 193
                       G    +P    A P+        G          F G+     +  + 
Sbjct: 136 AGQALAIGGFTAGKRTGLPGLALACPVRDPAGTIIGVCTLNLRLSWFSGVFSDKAMPPEA 195

Query: 194 ------------RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS 241
                        A  +        L +     +        I +   P      +  V 
Sbjct: 196 TACLLDGQGNVLAAWPEASRPIGRPLPDAATIMTEHGHAPKAIRTGPGPDGAASFEAIVP 255

Query: 242 SL----TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297
            +       Y      +++    L  +    L          L           L+   +
Sbjct: 256 VMANGRDALYLQLGLPVRSVGASLERTMFRDLGFLVVTLAFALLAALVFSNTTLLRPTRQ 315

Query: 298 ESFEYLSHRNH----------------------PSLSAYFDEGENLTPETVDKCPIPFFV 335
                 +                            ++A   E    T E +D  P P F 
Sbjct: 316 LVRTATAMARGNLSSRLDIGPGYGELSELGRALDVMAASLRERIRFTQELIDAIPAPVFY 375

Query: 336 YS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394
            S  G     N ++   T    +  I      S  + AP+++              +  I
Sbjct: 376 KSLDGRYLGCNKTYE--TMVHPLASILGK--TSRAVQAPEIARQCEDTDREALTEPQRSI 431

Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
               R    +                 N         G+  +    R ++  +     + 
Sbjct: 432 QFEMRA---RLRDGAWHDQLVTKSSFENASGVTAGIIGVMQDITTLRHSEMALSDSEAKY 488

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
            ++L +  DG  +I ++  I+ +N A  ++ GY  E++          +   +     L 
Sbjct: 489 RTLLASMRDGFVVIGKDNRIMESNPAFREMLGYSREELNGLTTLDITPERWQAPEEAVLR 548

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRII----IKKLPFSSCYSLTMHDISEWKQEKNK 570
             +       +        K+  +    +       +   +  Y   + D++E K  +  
Sbjct: 549 TAVDTQGFSGI-FEKEYRRKDGSVFPAALRLQRYPSRGDDARRYFAIVRDVTEDKAIEAD 607

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           L  AK+ AE  +  KSDFLA++SH+IRTPL A+IG +E+  +         +  +     
Sbjct: 608 LRAAKEAAETANRAKSDFLAKMSHDIRTPLNAVIGMTELTLDTPLSH----QQRDALETA 663

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
             S   +L ++ND+LDIS+IE+ K+ L  +   L   ++     ++  A +K + +  + 
Sbjct: 664 RESAASLLALINDILDISRIEARKLELASDVFDLRRTLAGITRSMRAQAKDKGLRLALAI 723

Query: 691 ANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIII------STTHTSNEEVILRVRD 743
           A   PR +  D   ++QI LN++ N I FT  G   +I               +   V D
Sbjct: 724 APRTPRFVTGDPVRLRQILLNLVGNGIKFTDQGSVSLIVGPDTGQAKPDGATAIAFTVSD 783

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TG+G+ +  LE     F Q   S   +  GTGLGL + + +     G     S P  G+ 
Sbjct: 784 TGIGIESERLEGIFDMFAQADASITRQYGGTGLGLAICRELARLMGGCIVAESRPGAGSR 843

Query: 804 IE 805
             
Sbjct: 844 FR 845



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/248 (10%), Positives = 62/248 (25%), Gaps = 11/248 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG--K 146
           I     + E +    + +G    ++ G+   D++      P   +         + G  +
Sbjct: 502 IGKDNRIMESNPAFREMLGYSREELNGLTTLDITPERWQAPEEAVLRTAVDTQGFSGIFE 561

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                 +G+     + L   P    +      R F IV     D    A  +   +    
Sbjct: 562 KEYRRKDGSVFPAALRLQRYPSRGDDAR----RYFAIVRDVTEDKAIEADLRAAKEAAET 617

Query: 207 LHEIKKGHSSVEKEKYD-----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
            +  K    +            +           + ++     E        L      +
Sbjct: 618 ANRAKSDFLAKMSHDIRTPLNAVIGMTELTLDTPLSHQQRDALETARESAASLLALINDI 677

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
           L        + E    +   + T      +++  +K+    L+    P    +       
Sbjct: 678 LDISRIEARKLELASDVFDLRRTLAGITRSMRAQAKDKGLRLALAIAPRTPRFVTGDPVR 737

Query: 322 TPETVDKC 329
             + +   
Sbjct: 738 LRQILLNL 745


>gi|186686369|ref|YP_001869565.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC
           73102]
 gi|186468821|gb|ACC84622.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC
           73102]
          Length = 878

 Score =  363 bits (933), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 116/583 (19%), Positives = 234/583 (40%), Gaps = 27/583 (4%)

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
              +D     +      ++++   ++      + + +        + +   ++   +   
Sbjct: 157 VYPEDKQSVMQGIGQALAQKTDYNDEFRIIRSDQSVHWISAKGKFIYDEQGQAVRMIGVC 216

Query: 307 NHPSLSAYFDEGENLTP-ETVDKCPI--PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIA 363
              ++    +E       +  ++  I       S  +++  N              I   
Sbjct: 217 METTVCKQAEESTRELTTQVQEQANILNAILTASVDHIYIFNRRGCYQYVSSDAASILGF 276

Query: 364 GGLS----TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
                   TL D    +D        L    +T          +  +  +          
Sbjct: 277 QPQDIVGKTLQDLDLPTDLVEQVDNQLKAVIKTGQPIKDECKYVTADGVHYYEYIITALR 336

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
             NQ  E      +  +  + +  ++ +     +   + E+   G+A  N +G ++  N 
Sbjct: 337 NLNQSIE--GVIIVSRDITEHKRAEKSLRESEARFRRLFESNLIGVAFWNVDGFVIDAND 394

Query: 480 AVSKLFGYPVED--ILRK-PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
           A  +L GY  E+  +L K  +  F       + +  + E+ +  + +  EK  +    + 
Sbjct: 395 AFLQLAGYTHEEFTLLGKVNWQEFTPIEYKYLDDRAILEVQTTGVSKIYEKEYIHRNGKR 454

Query: 537 KLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH-------AKKIAEKESSHKSDFL 589
             + L I +         +  + DI++ K  + +          A++ AE  +  K +FL
Sbjct: 455 VPIVLGIALLNDSQEHGVAFVL-DITDRKLAEKECDRLLQCERTARQEAEIANQIKDEFL 513

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
           A +SHE+RTPL  I+G+S++++ ++F      R       I+R+  L   ++ DLLD+S+
Sbjct: 514 AVLSHELRTPLNPILGWSKMLRTRKFDQQTTNRA---LETIERNAKLQTQLIEDLLDVSR 570

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709
           I  GK+NL+  PV+L   V  A+  V+L A  K I I+T F  ++ +++ D   ++Q+  
Sbjct: 571 ILQGKLNLNICPVNLVMVVEAALETVRLAAQAKSIQIQTIFDASLGQVMGDPNRLQQVVW 630

Query: 710 NILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
           N+LSNA+ FTP+GG++ I     ++ ++ ++V DTG G+    L      F Q   +   
Sbjct: 631 NLLSNAVKFTPTGGRVGIRL-MEASNQIQIQVSDTGKGINPDFLPYVFDYFRQADGTTTR 689

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAK--GTLIEIIFPL 810
              G GLGL + + +V+ + GK    S P    G    +  PL
Sbjct: 690 TFGGLGLGLAIVRKVVEMHGGKVQAES-PGDGLGATFTVEVPL 731



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/379 (10%), Positives = 102/379 (26%), Gaps = 35/379 (9%)

Query: 93  GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI--DPNNHIGDLLKRQNTWYGKTTLW 150
           G  + +S +    +G     ++G  L D+     +    +N +  ++K       +    
Sbjct: 261 GCYQYVSSDAASILGFQPQDIVGKTLQDLDLPTDLVEQVDNQLKAVIKTGQPIKDECKYV 320

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
             +G + Y   +     + + N+   G     +              +  + +F  L E 
Sbjct: 321 TADGVHYY---EYIITALRNLNQSIEGV--IIVSRDITEHKRAEKSLRESEARFRRLFES 375

Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
                +       +         L      + + L +    +   ++ +        E  
Sbjct: 376 NLIGVAFWNVDGFVIDANDAFLQLAGYTHEEFTLLGKVNWQEFTPIEYKYLDDRAILEVQ 435

Query: 269 LPE-----QEDFHTINLNQYTKKQYFGTLQNNSKESFE-YLSHRNHPSLSAYFDEGENLT 322
                   ++++   N  +         L ++ +      L   +        D      
Sbjct: 436 TTGVSKIYEKEYIHRNGKRVPIVLGIALLNDSQEHGVAFVLDITDRKLAEKECDRLLQCE 495

Query: 323 PETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
                +  I   +            FL +  ++    +    G S +L   K       +
Sbjct: 496 RTARQEAEIANQIKDE---------FLAVLSHELRTPLNPILGWSKMLRTRKFDQQTTNR 546

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
            +         I  +A+L T          +      +        P N +   +     
Sbjct: 547 AL-------ETIERNAKLQTQLIED----LLDVSRILQGKLNLNICPVNLVMVVEAALET 595

Query: 443 NKRKMEIEVMQLCSILEAT 461
            +   + + +Q+ +I +A+
Sbjct: 596 VRLAAQAKSIQIQTIFDAS 614



 Score = 46.2 bits (108), Expect = 0.026,   Method: Composition-based stats.
 Identities = 17/168 (10%), Positives = 45/168 (26%), Gaps = 9/168 (5%)

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
           + E    +  +  ++    +L   L+ +  G+   N     +  +     LFG       
Sbjct: 88  QQEIAQRQQLEVILKDSEERLRLALDVSQMGLWDWNILTNQVIWSENYELLFGLIPSSFD 147

Query: 494 R--KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
              + F   +       +   + + L+                ++ +  +    K +   
Sbjct: 148 GPYETFQKCVYPEDKQSVMQGIGQALAQKT--DYNDEFRIIRSDQSVHWISAKGKFIYDE 205

Query: 552 SC----YSLTMHDISEWKQEKNKLSHAKKI-AEKESSHKSDFLARVSH 594
                       + +  KQ +           E+ +   +   A V H
Sbjct: 206 QGQAVRMIGVCMETTVCKQAEESTRELTTQVQEQANILNAILTASVDH 253



 Score = 39.6 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 27/175 (15%), Positives = 58/175 (33%), Gaps = 18/175 (10%)

Query: 69  DSENTFV--FDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFK--MIGM-RLCDVSD 123
           +SE  F   F+     V F WN+D  G++ + ++   +  G    +  ++G     + + 
Sbjct: 364 ESEARFRRLFESNLIGVAF-WNVD--GFVIDANDAFLQLAGYTHEEFTLLGKVNWQEFTP 420

Query: 124 IL--HIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF 181
           I   ++D +  I ++     +   +       G    VPI L    +           G 
Sbjct: 421 IEYKYLD-DRAILEVQTTGVSKIYEKEYIHRNG--KRVPIVLGIALLNDSQE-----HGV 472

Query: 182 GIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM 236
             V              RL +      +  +  + ++ E   + S +   P   +
Sbjct: 473 AFVLDITDRKLAEKECDRLLQCERTARQEAEIANQIKDEFLAVLSHELRTPLNPI 527


>gi|298528353|ref|ZP_07015757.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298512005|gb|EFI35907.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 1437

 Score =  363 bits (933), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 87/468 (18%), Positives = 183/468 (39%), Gaps = 55/468 (11%)

Query: 390 DRTCIAASARLHTIQWNRENSLAMTFI---PFEKANQFPENMPQNGIEPEDVDTRINKRK 446
           +         +  +  +      M                      +  + V  +  +  
Sbjct: 482 EGHARVIREAVVPVIRDNRVVAIMGLGNKPAAYDKKDVEVISFFADVTWDLVQQKRTQEA 541

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
           ++    +L +I +A    I +++ +G +   N A   + GY  ++ + +     +  +  
Sbjct: 542 LQNSQARLKTITDAAQTAIIMMDAQGYVSYWNPAAETILGYARDEAIGRDLHELIMPSRY 601

Query: 507 -SVMNHYLTEILSLDLRQTLEK--ITLGSTKEEKLLSLRIIIKKLPFSSCY--SLTMHDI 561
               +    E  S      + +       TK  + + + + +  +     +     + DI
Sbjct: 602 TEDFHASFPEFQSTGQGNAVGRTTELYALTKNGREIPVELSLSSVLIQGQWHAIGIVRDI 661

Query: 562 SEWKQEKNKLSHA--------------KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
           +E KQ + +L                 +  AE+ +  KS+FLA +SHEIRTP+  +IG +
Sbjct: 662 TEKKQAQEELQRNARNLELKNAELDAARINAEEATKAKSEFLANMSHEIRTPMNGVIGMT 721

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
            ++ +       +     YA  +  S   +L ++ND+LD SKIE+G++++      L+  
Sbjct: 722 GLLLDTDL----DSEQQHYARTVRSSAESLLTVINDILDFSKIEAGRLDIETVDFDLEAM 777

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII 726
           + +   ++ + A EK + +  S   N+P  +  D   ++QI +N++ NA+ FT  G ++ 
Sbjct: 778 LRDFSGMMAVKAEEKGLELICSMDPNVPSMVRGDSGRLRQILMNLVGNAVKFTEHG-EVE 836

Query: 727 ISTTHTSNEEVI---------------------------LRVRDTGVGMTNYELEKAMKP 759
           I  +   N+E                               VRDTG+G+   + +   + 
Sbjct: 837 IKVSRMVNDECENPNAETQENSHDLYRSSFTTQHSCLMHFSVRDTGIGIPEDKQDSLFES 896

Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           F Q+  S   +  GTGLGL +++ + +   G   + S   +G+     
Sbjct: 897 FSQVDASTTRKFGGTGLGLAISRQLAEIMGGTAGLESVEGRGSTFWFT 944



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 57/559 (10%), Positives = 140/559 (25%), Gaps = 88/559 (15%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID----PNNHIGDLLKRQN 141
            ++ D  G ++E++       G    + +G  L +V +I+ +D      N +   L++  
Sbjct: 265 VFSCDKLGRIQEMNPAAENLTGWTIDECMGRPLKEVFNIVTLDDHSQEENPVSKALQQGR 324

Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG-KRL 200
               +T    I      + I  +  PI        G     +      ++    L  KRL
Sbjct: 325 VVGQETYSVLIVRNGSKITIKKSCSPIKDNMGNIIGA--VLVFRDITGEHTANLLTMKRL 382

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK----- 255
           +              +   +  + F   S      ++    +L+        + +     
Sbjct: 383 ELYEYAEAHSLDELMTKVLDDAEEFVDSSIGFFHFVEKDQKTLSLQRWSTRSLKELCHMP 442

Query: 256 --TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP---- 309
                YP+  +       +E    I+ +  +     G  + +++   E +          
Sbjct: 443 GNKMHYPIDQAGVWVQAAREKRPVIHNDYESMPDKKGLPEGHARVIREAVVPVIRDNRVV 502

Query: 310 ----------------------------------SLSAYFDEGENLTPETVDKCPIPFFV 335
                                                      +       D       +
Sbjct: 503 AIMGLGNKPAAYDKKDVEVISFFADVTWDLVQQKRTQEALQNSQARLKTITDAAQTAIIM 562

Query: 336 YSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394
               G + Y NP+   +  Y   + I        ++ +    D +A  P          +
Sbjct: 563 MDAQGYVSYWNPAAETILGYARDEAIGRDLH-ELIMPSRYTEDFHASFPEFQSTGQGNAV 621

Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
             +  L+ +  N         +               GI  +  + +  + +++     L
Sbjct: 622 GRTTELYALTKNGREIPVELSLSSVLIQGQ---WHAIGIVRDITEKKQAQEELQRNARNL 678

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
                       + N E      N    +      E +      +    N    M   L 
Sbjct: 679 E-----------LKNAELDAARIN--AEEATKAKSEFLANMSHEIRTPMNGVIGMTGLLL 725

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA 574
           +      +Q   +                       +      ++DI ++ + +      
Sbjct: 726 DTDLDSEQQHYARTVR------------------SSAESLLTVINDILDFSKIEAGRLDI 767

Query: 575 KKIAEKESSHKSDFLARVS 593
           + +     +   DF   ++
Sbjct: 768 ETVDFDLEAMLRDFSGMMA 786



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 21/151 (13%), Positives = 54/151 (35%), Gaps = 8/151 (5%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           R ++ ++        + L A SDG+   ++ G I   N A   L G+ +++ + +P    
Sbjct: 241 RHSEMQLLESRDHTAATLHAISDGVFSCDKLGRIQEMNPAAENLTGWTIDECMGRPLKEV 300

Query: 501 LEQ---NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----C 553
                 +  S   + +++ L        E  ++   +    ++++     +  +      
Sbjct: 301 FNIVTLDDHSQEENPVSKALQQGRVVGQETYSVLIVRNGSKITIKKSCSPIKDNMGNIIG 360

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
             L   DI+      N L+  +    + +  
Sbjct: 361 AVLVFRDITGE-HTANLLTMKRLELYEYAEA 390



 Score = 41.2 bits (95), Expect = 0.70,   Method: Composition-based stats.
 Identities = 21/270 (7%), Positives = 63/270 (23%), Gaps = 29/270 (10%)

Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
                 E  + T  T+       F     G +   NP+   LT +   + +         
Sbjct: 243 SEMQLLESRDHTAATLHAISDGVFSCDKLGRIQEMNPAAENLTGWTIDECMGRPLKEVFN 302

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
           +            PV         +        I  N      +        +     + 
Sbjct: 303 IVTLDDHSQEEN-PVSKALQQGRVVGQETYSVLIVRNGSKIT-IKKSCSPIKDNMGNIIG 360

Query: 430 QNGIEPEDVDTRIN-----------KRKMEIEVMQLCS-ILEATSDGIAIINRE-GIILS 476
              +  +                  +      + +L + +L+   + +   +   G    
Sbjct: 361 AVLVFRDITGEHTANLLTMKRLELYEYAEAHSLDELMTKVLDDAEEFV---DSSIGFFHF 417

Query: 477 TNR-----AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
             +     ++ +     ++++   P          + +  ++            +  ++ 
Sbjct: 418 VEKDQKTLSLQRWSTRSLKELCHMPGNKMHYPIDQAGV--WVQAAREKRPVIHNDYESMP 475

Query: 532 STK---EEKLLSLRIIIKKLPFSSCYSLTM 558
             K   E     +R  +  +   +     M
Sbjct: 476 DKKGLPEGHARVIREAVVPVIRDNRVVAIM 505


>gi|77360094|ref|YP_339669.1| two-component member protein [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76875005|emb|CAI86226.1| putative two-component member protein [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 1107

 Score =  363 bits (933), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 97/517 (18%), Positives = 210/517 (40%), Gaps = 24/517 (4%)

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEI 362
               +  L       E+     ++        +   G +   N +   +  ++  + ++ 
Sbjct: 255 GMVRYKLLLEKKSADESRLNAILETAIDGIVTIDHQGIILSFNDAASKILGWREHE-LQG 313

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
                 L D   L++ ++   + L  S    I  +        +    L    +   +  
Sbjct: 314 KSVQILLNDNNALNNASSSGDMTLDLS--AIIGINRDTFAKHKDNH--LIPVRLGIGQVT 369

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI---INREGIILSTNR 479
           Q  +     G   +    R  ++ +     +  S+++    G+A     +    +L  + 
Sbjct: 370 QTGQPPLYVGFITDLTQQRALQKTVVENEQKYRSLMQNMP-GVAFRCKFDTNYTMLFVSP 428

Query: 480 AVSKLFGYPVEDILRKPFTV--FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
           ++  L GY  ++ + +       + ++   ++   LT  ++   + ++        +   
Sbjct: 429 SILDLTGYTPDEFIEQHIEFTDLILKSDQQMIITTLTNAVTEKRQYSV--EYRIRHRNGA 486

Query: 538 LLSL----RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
            + +             +      + DI+E K+ + KL HAK  AE+ ++ K  F+A +S
Sbjct: 487 TVWVLEKGSFDFNNTDVAQWIDGVLVDITERKEYEAKLEHAKLQAEEAANAKQSFMANMS 546

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HEIRTP+ AIIGFS+++ +            ++   ++ +   +L ++N++LD +K+E G
Sbjct: 547 HEIRTPMNAIIGFSDLLMDTPLSK----EQQKHLVTVNNAARSLLRLLNEILDSAKLERG 602

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNIL 712
           K+ +     +L   +   IS   L A +K + +  +   ++      D   ++QI  N++
Sbjct: 603 KLTIEPVHFNLKPVIDSIISTFWLEAKKKNLNLTLNINKSVSTAYYGDPDRLRQILTNLI 662

Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
            NAI FT  G  + ++ + T N  +   V+DTG+G+    ++   +PF Q   +   R  
Sbjct: 663 GNAIKFTEQGA-VTVTVSTTQNNHLFFEVQDTGIGIAKDRIKAVFQPFVQADGTTTRRFG 721

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GTGLG  ++K +V+   G   + S   KG+      P
Sbjct: 722 GTGLGTTISKQLVELMHGSIDLVSEVDKGSCFYFSLP 758



 Score = 77.4 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 38/192 (19%), Positives = 74/192 (38%), Gaps = 4/192 (2%)

Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
             A    I  +   S  +TF+    A           +    V  ++   K   +  +L 
Sbjct: 215 FVATSPLIYADENTSAGLTFVAIAVATATVAITSVVAVINGMVRYKLLLEKKSADESRLN 274

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           +ILE   DGI  I+ +GIILS N A SK+ G+   ++  K   + L  N          +
Sbjct: 275 AILETAIDGIVTIDHQGIILSFNDAASKILGWREHELQGKSVQILLNDNNALNNASSSGD 334

Query: 516 I-LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---YSLTMHDISEWKQEKNKL 571
           + L L     + + T    K+  L+ +R+ I ++  +     Y   + D+++ +  +  +
Sbjct: 335 MTLDLSAIIGINRDTFAKHKDNHLIPVRLGIGQVTQTGQPPLYVGFITDLTQQRALQKTV 394

Query: 572 SHAKKIAEKESS 583
              ++       
Sbjct: 395 VENEQKYRSLMQ 406


>gi|289665595|ref|ZP_06487176.1| two-component system sensor histidine kinase-response regulator
           hybridprotein [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 1364

 Score =  363 bits (932), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 125/706 (17%), Positives = 248/706 (35%), Gaps = 65/706 (9%)

Query: 164 AALPIYSRNREFSGFR-----GFGIV----HVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214
           +  PI +     SG+R     GF ++            P+               +++  
Sbjct: 185 SGEPIMTSPISLSGYRFPSESGFLVLLAIYREGMPLQTPQQRMAATSGWVYAPFSVEQMV 244

Query: 215 SSVEKEKYDI-FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE 273
            S   E+ ++               +  +     A +  V++       T   ++ P   
Sbjct: 245 QSALGERDEVALDLSDRNESTHNFYRSGTPANDSALRPPVVQLLPMYGRTWVITAHPTAS 304

Query: 274 DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF 333
              ++N N                 +   L   N         +   L            
Sbjct: 305 FLASLNQNSPWLIGGLVMAGAVLFAALLVLYFSNGLRREEVLRKQMELAALVSHSSEAIV 364

Query: 334 FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393
                G++ + NP+   +  Y + + I+    L+ LL     +                 
Sbjct: 365 AETPDGHITHWNPAAEAMFGYTAEEAIDQ--DLTMLLSPQPYAMPEVDHADA------AL 416

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK------- 446
              +    T++    + + +                 +    +  +   + ++       
Sbjct: 417 AGNALAAQTMRHRDGHQVYVLASKAPIIESEGTLSGHSHFFRDISERVRSHQRIIDLNAS 476

Query: 447 MEIEVMQ-----------LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
           +E +V +             +IL      I   +  G +   N A  KL GY   +++ +
Sbjct: 477 LEHQVAERTSELVKFSVLQRAILAHAGYAIIATDSSGFVTLFNPAAEKLLGYSAAEVIGR 536

Query: 496 PFTVFLEQNTP-SVMNHYLTEILSLDLRQTLEK-------------ITLGSTKEEKLLSL 541
                  +        H L +     +  TLE                   + + + L +
Sbjct: 537 RKASQFIEQDELQARAHMLADQTGTPVAHTLEAIAALTSLGRSDTSEWTYVSHDGRRLPV 596

Query: 542 RIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
            + +  L         Y     D++E K  + +L  A   A+  +  KSDFLA +SHEIR
Sbjct: 597 LLTLSTLRDDHDQVIGYLGVAVDLTEQKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIR 656

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TP+ AI+G   +++             E    IDRS   +L+I+ND+LD SKIE+G+++L
Sbjct: 657 TPMNAILGMLYLLQRSELPGAA----QEMVTKIDRSARALLEIINDILDFSKIEAGRIDL 712

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTS-FANNIPRILADLRSVKQIALNILSNAI 716
              P  L++       L++   + K + +       +   +L D   + Q+ +N++ NAI
Sbjct: 713 ERAPFDLNQLFDNIADLMRSSLSAKPVEMIVEPLPRDSRWLLGDALRINQVLVNLVGNAI 772

Query: 717 HFTPSGGQIIISTTHTSNEE-----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
            FT  G ++++S     + +     ++  VRDTG+G++  +      PF Q   S   R 
Sbjct: 773 KFTEQG-EVVLSVRRFPSGDPNKLKLLFSVRDTGIGISKEKQSLIFSPFLQADTSTSRRY 831

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
            G+GLGL +++ +V+   G+  + S P +G+    +  L  ++ P 
Sbjct: 832 GGSGLGLTISRRLVELMGGELEVESVPGRGSEFYFVITLEKSAPPQ 877



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 55/440 (12%), Positives = 124/440 (28%), Gaps = 51/440 (11%)

Query: 169 YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228
                EF G  G+G +H  RV         +  +        ++  +  + E+Y +   +
Sbjct: 99  RDYPHEFPGVLGYGYIH--RVAPADEDAFLQAARADGAPDIHRRPLAPWDGERYMVLYFE 156

Query: 229 SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288
                 R      +                 P++TS  S    +    +  L      + 
Sbjct: 157 PESSGNRPLGIDIASEPRRRAAALQAARSGEPIMTSPISLSGYRFPSESGFLVLLAIYRE 216

Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSF 348
              LQ   +                                    +VY+  ++     S 
Sbjct: 217 GMPLQTPQQRMAATSG-----------------------------WVYAPFSVEQMVQSA 247

Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP--VMLYRSDRTCIAASARLHTIQWN 406
           L      ++D  +          +   ++++A++P  V L          +A        
Sbjct: 248 LGERDEVALDLSDRNESTHNFYRSGTPANDSALRPPVVQLLPMYGRTWVITAHPTASFLA 307

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
              SL                +    +        + + ++  + M+L +++  +S+ I 
Sbjct: 308 ---SLNQNSPWLIGGLVMAGAVLFAALLVLYFSNGLRREEVLRKQMELAALVSHSSEAIV 364

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
               +G I   N A   +FGY  E+ + +  T+ L           +    +      L 
Sbjct: 365 AETPDGHITHWNPAAEAMFGYTAEEAIDQDLTMLLSP--QPYAMPEVDHADAALAGNALA 422

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKES 582
             T+   ++   + +      +  S            DISE  +   ++       E + 
Sbjct: 423 AQTM-RHRDGHQVYVLASKAPIIESEGTLSGHSHFFRDISERVRSHQRIIDLNASLEHQV 481

Query: 583 SHKSDFL--------ARVSH 594
           + ++  L        A ++H
Sbjct: 482 AERTSELVKFSVLQRAILAH 501



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/284 (8%), Positives = 66/284 (23%), Gaps = 25/284 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMR-LCDVSDILHIDPNNH---------IGDLLK 138
            D+ G++   +    K +G  A ++IG R      +   +    H         +   L+
Sbjct: 509 TDSSGFVTLFNPAAEKLLGYSAAEVIGRRKASQFIEQDELQARAHMLADQTGTPVAHTLE 568

Query: 139 RQNTW----YGKTTLW-PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193
                       T+ W  +      +P+ L    +   + +  G+ G  +          
Sbjct: 569 AIAALTSLGRSDTSEWTYVSHDGRRLPVLLTLSTLRDDHDQVIGYLGVAV--DLTEQKLH 626

Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253
               +         ++ K    +    +              ++                
Sbjct: 627 EKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSELPGAAQEMVTKID 686

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ-------YFGTLQNNSKESFEYLSHR 306
                   + ++     + E    I+L +                  + S +  E +   
Sbjct: 687 RSARALLEIINDILDFSKIEAGR-IDLERAPFDLNQLFDNIADLMRSSLSAKPVEMIVEP 745

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLL 350
                     +   +    V+           G +  +   F  
Sbjct: 746 LPRDSRWLLGDALRINQVLVNLVGNAIKFTEQGEVVLSVRRFPS 789



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/375 (9%), Positives = 81/375 (21%), Gaps = 12/375 (3%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150
             G++   +       G  A + I   L  +                          T+ 
Sbjct: 368 PDGHITHWNPAAEAMFGYTAEEAIDQDLTMLLSPQPYAMPEVDHADAALAGNALAAQTMR 427

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
             +G    V +  +  PI       SG   F                  L+    H  ++
Sbjct: 428 HRDGHQ--VYVLASKAPIIESEGTLSGHSHF--FRDISERVRSHQRIIDLNASLEH--QV 481

Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270
            +  S + K      +  +   +  +    S     +    + L       +     +  
Sbjct: 482 AERTSELVKFSVLQRAILAHAGYAIIATDSSGFVTLFNPAAEKLLGYSAAEVIGRRKASQ 541

Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330
             E             Q    + +  +      S     +    +   +      +    
Sbjct: 542 FIEQDELQARAHMLADQTGTPVAHTLEAIAALTSLGRSDTSEWTYVSHDGRRLPVLLTLS 601

Query: 331 IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390
                  H  +       + LT+ K  +        +        SD  A     +    
Sbjct: 602 T--LRDDHDQVIGYLGVAVDLTEQKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIRTPM 659

Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450
              +     L   +        +T I           +       +       +  +E  
Sbjct: 660 NAILGMLYLLQRSELPGAAQEMVTKIDRSARA----LLEIINDILDFSKIEAGRIDLERA 715

Query: 451 VMQLCSILEATSDGI 465
              L  + +  +D +
Sbjct: 716 PFDLNQLFDNIADLM 730


>gi|82702685|ref|YP_412251.1| multi-sensor hybrid histidine kinase [Nitrosospira multiformis ATCC
           25196]
 gi|82410750|gb|ABB74859.1| multi-sensor hybrid histidine kinase [Nitrosospira multiformis ATCC
           25196]
          Length = 1397

 Score =  363 bits (932), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 97/595 (16%), Positives = 217/595 (36%), Gaps = 39/595 (6%)

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
                +     +     E     N  +   +     L  + +      +     + +   
Sbjct: 368 AGWDEIGQLASTFNTMTERLTASNRQRDVAENDLRQLNQDLENHVAERTADLEQANAVLI 427

Query: 316 DEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
            + E +             +     +   NP    L  Y   + I     +  L+  P  
Sbjct: 428 SKEEEMRSIVEHMVDCIITIDDKSIIRSVNPVIEKLFGYTREEVIGQPVSI--LMPEPFR 485

Query: 376 SDNNAIKPVMLYRSDRT-------CIAASAR-----LHTIQWNRENSLAMTFIPFEKANQ 423
           S +                      +             ++   +N   +          
Sbjct: 486 SGHEGYVERYYRTGRGRCEFDHILTLEVEGVHNIGMGREVEGRHKNGELIDLYVAVSEYF 545

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
                   G+  +  + +  ++ +     +  +I++  +  +  +  +G+++  NR   +
Sbjct: 546 VGGKRYFTGVLRDIRERKRVEQALRNSEQRFRAIVDNLAALVGEMTPDGVLVEMNRTALE 605

Query: 484 LFGYPVEDILRKPF----TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
           + G    D++ K          +      +   +   ++    + +            L+
Sbjct: 606 VGGLQSGDVIGKCLSETEWFSYKPEVQQQIRDDIRRAVAG---EIVRHDVAIRIANGDLM 662

Query: 540 SLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
           ++  ++  +       +    +  ++SE  +    L  A+  AE+ +  KS FLA +SHE
Sbjct: 663 TIDFMLVPVRDDKGKVIKLIPSGINVSERIRILKDLEQARHEAEQANEAKSIFLAAMSHE 722

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           IRTP+  +IG ++V++            +E  + I  S   +L+I+ D+LD SKIE+G++
Sbjct: 723 IRTPMNGVIGMADVLQQTSLSGY----QMEMVDLIRESAFALLEIIEDILDFSKIEAGRL 778

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSN 714
            +   P+S+++ V +A ++++  A  K + +       IP  +L D   ++Q+ +N+ +N
Sbjct: 779 EIEQAPMSVEKVVEKACAMLESLAARKAVELTLFLDPAIPDEVLGDALRLRQVLVNLANN 838

Query: 715 AIHFT---PSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
           AI F+      G++ +      +++    V   + D G+GM      +    F Q   S 
Sbjct: 839 AIKFSSGLQEPGRVSVRALLVEHDQDTVTVEFEITDNGIGMNEEVQSRLFTSFTQGDTST 898

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP--LYDTSHPHDCI 820
             R  GTGLGL +   +V+   G   + S P +G++  +     L  +SH  D +
Sbjct: 899 TRRYGGTGLGLAITHHLVELMGGSIQVRSAPGEGSVFTVRLSFDLIPSSHMEDKV 953



 Score = 41.9 bits (97), Expect = 0.40,   Method: Composition-based stats.
 Identities = 23/248 (9%), Positives = 60/248 (24%), Gaps = 13/248 (5%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR--QNTWYGKTT 148
             G L E++    +  G  +  +IG  L +            +   ++   +    G+  
Sbjct: 592 PDGVLVEMNRTALEVGGLQSGDVIGKCLSE---TEWFSYKPEVQQQIRDDIRRAVAGEIV 648

Query: 149 L----WPIEGTNLYVPIDLAALPIYSRNREFSGF--RGFGIVHVNRVDNDPRALGKRLDK 202
                  I   +L   ID   +P+     +       G  +    R+  D        ++
Sbjct: 649 RHDVAIRIANGDLMT-IDFMLVPVRDDKGKVIKLIPSGINVSERIRILKDLEQARHEAEQ 707

Query: 203 KFSHLHEIKKGHS-SVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
                       S  +      +           +      + +        L      +
Sbjct: 708 ANEAKSIFLAAMSHEIRTPMNGVIGMADVLQQTSLSGYQMEMVDLIRESAFALLEIIEDI 767

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
           L   +      E        +   ++    L++ +      L+    P++          
Sbjct: 768 LDFSKIEAGRLEIEQAPMSVEKVVEKACAMLESLAARKAVELTLFLDPAIPDEVLGDALR 827

Query: 322 TPETVDKC 329
             + +   
Sbjct: 828 LRQVLVNL 835


>gi|302389532|ref|YP_003825353.1| multi-sensor signal transduction histidine kinase
           [Thermosediminibacter oceani DSM 16646]
 gi|302200160|gb|ADL07730.1| multi-sensor signal transduction histidine kinase
           [Thermosediminibacter oceani DSM 16646]
          Length = 576

 Score =  363 bits (932), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 96/375 (25%), Positives = 171/375 (45%), Gaps = 34/375 (9%)

Query: 444 KRKMEIEVMQL-------CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
            +K+ I + +L         +L    DGI +++ +  ++  N A  KL G   E    K 
Sbjct: 222 AKKLRITLEELNEKTAGVEDLLAGIVDGIIVVDAQRRVMLINPAACKLVGADSEKSAGKK 281

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CY 554
               +       ++  + + L        E + L      ++L + I   K         
Sbjct: 282 LISIIR---NYQLDEAVKKTLKEGSPYFKEIVLLPRE---QILKVHITPIKDRAGRISGS 335

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
            + M DI+E K  +                +S+FLA VSHE+RTPLT+I GF E +    
Sbjct: 336 VIVMRDITELKHLE--------------KLRSEFLANVSHELRTPLTSIKGFVETLLEGA 381

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
           +   G  +   + + ID     +  ++N+L+D+SKIE+ ++ L  E VS  E ++E I +
Sbjct: 382 YKDPGLAK--RFLSIIDAEAGRLYRLINNLMDLSKIETNQLKLRIEDVSAAELINEVIII 439

Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
            +    EK +   T    ++P++ AD   ++Q+ +N+L NAI +T SGG++ I       
Sbjct: 440 FENRLKEKGLKFSTDIPKDLPKVKADPDWLRQVFINLLDNAIKYTQSGGRVWIEA--EPK 497

Query: 735 EEVI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
            +V+  RV DTG+G+   +L +  + F ++  ++     G+GLGL + K +V A  G   
Sbjct: 498 GDVVEFRVCDTGIGIPEEDLPRVFERFYRVDKARSPEMGGSGLGLAIVKHIVRAFGGDIR 557

Query: 794 IFSTPAKGTLIEIIF 808
           + S   +G+      
Sbjct: 558 VESRVNQGSKFIFTL 572



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/241 (15%), Positives = 76/241 (31%), Gaps = 13/241 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +DA   +  I+    K +G  + K  G +L  +     +D    +   LK  + ++ +  
Sbjct: 253 VDAQRRVMLINPAACKLVGADSEKSAGKKLISIIRNYQLD--EAVKKTLKEGSPYFKEIV 310

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           L P E       + +   PI  R    SG     ++           L  R +   +  H
Sbjct: 311 LLPRE-----QILKVHITPIKDRAGRISG--SVIVMRDITELKHLEKL--RSEFLANVSH 361

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           E++   +S++     +       P   +  +  S+ +  A +   L      L   E + 
Sbjct: 362 ELRTPLTSIKGFVETLLEGAYKDPG--LAKRFLSIIDAEAGRLYRLINNLMDLSKIETNQ 419

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
           L  + +  +           F          F     ++ P + A  D    +    +D 
Sbjct: 420 LKLRIEDVSAAELINEVIIIFENRLKEKGLKFSTDIPKDLPKVKADPDWLRQVFINLLDN 479

Query: 329 C 329
            
Sbjct: 480 A 480


>gi|284165554|ref|YP_003403833.1| PAS/PAC sensor signal transduction histidine kinase [Haloterrigena
           turkmenica DSM 5511]
 gi|284015209|gb|ADB61160.1| PAS/PAC sensor signal transduction histidine kinase [Haloterrigena
           turkmenica DSM 5511]
          Length = 821

 Score =  363 bits (932), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 105/747 (14%), Positives = 235/747 (31%), Gaps = 44/747 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + +D  G +   +E   +  G     ++G           +  +    +L         
Sbjct: 100 IFMLDPDGTVASWNEGAERIKGYSEDAIVGNHFSTFYTDEDMADDVPQTNLETAAAEGRA 159

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +   W +         ++    I     +  GF    +        +     +R      
Sbjct: 160 EDEGWRVRSDGTRFWANVVITAIRDDGGQLRGFTK--VTRDMTERREYEQQLRRERDLTE 217

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQS------PPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
            + E       V  E   +                 ++       E Y    + +  ++ 
Sbjct: 218 RILETVPITIGVVTEDNALVRANRRMLEHFAIEDSAIETYSLESWELYDAAGEPIPADEQ 277

Query: 260 PLLTSEESSLPEQEDFHTINLN---QYTKKQYFGTLQNNSKE----SFEYLSHRNHPSLS 312
           P   + E   P  +    + +    +         L ++  E            +     
Sbjct: 278 PWARARERGEPVYDAQRQVEVPGIGRRWLSLNAAPLDDDQAEDGRIVVAIDDITDQKERE 337

Query: 313 AYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
                  N T + +   PI   V +  G     N            + I  +  +     
Sbjct: 338 RLLRREYNQTEKLLRTAPIAIAVQNAEGETILTNQRAQESLGLSDQEFIGESDDVGEWEI 397

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
                +      +   R   T          +    +  L                    
Sbjct: 398 YDSDGERLPTNEMPAARVLETGNPVFNEELVVDPPDDELLQFRVNATPLHGPDGGVERVV 457

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCS----ILEATSDGIAIINREGIILSTNRAVSKLFGY 487
               +  + +  +R++E    +L +    IL   SD    ++ E      N   ++    
Sbjct: 458 TAAEDITELKRRERQLEQRKSELETELSDILGRISDAFYALDDEWRFTHLNEQAAETLQQ 517

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
             +D+L +        +   +      + +    ++ +         +     L   +  
Sbjct: 518 SRDDVLGRKVWTTFPDDAEGIYREQFQQAMET--QEPVNFEVYAEDLD---TWLEYNVYP 572

Query: 548 LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
               S  S+  HDI+E K+        ++  EK +     F    SH+++ PL  +  + 
Sbjct: 573 --SESGLSIYFHDITERKE-------YQRKLEKSNERLEQFAYAASHDLQEPLRMVSSYL 623

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
           + +   R+    +    E+  +       +  +++ LL  S++++      FEPV LD  
Sbjct: 624 Q-LLESRYSDELDDDGEEFIEFAVDGAERMRKMIDGLLAYSRVDTQGEP--FEPVDLDTV 680

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT-PSGGQII 726
           V      +Q+   E    I    A ++PR+  D   ++Q+  N++SNA+ ++     Q+ 
Sbjct: 681 VDAVCEDLQMKIEETDAEIT---AESLPRVRGDESQIQQVFQNLVSNALEYSGDEPPQVE 737

Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
           I T   +  + I+ V D G+G+   + ++  + F ++ +  + + +GTG+GL L + +++
Sbjct: 738 I-TAERARSKWIVSVEDNGIGIDPDDQDRVFEVFERLHS--RDKYDGTGIGLALCQRIIE 794

Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLYDT 813
            + G  +I S P +GT      P  D 
Sbjct: 795 RHEGTIWIDSEPGEGTTFSFALPAVDA 821


>gi|86358747|ref|YP_470639.1| two-component sensor histidine kinase/response regulator hybrid
           protein [Rhizobium etli CFN 42]
 gi|86282849|gb|ABC91912.1| probable two-component sensor histidine kinase/response regulator
           hybrid protein [Rhizobium etli CFN 42]
          Length = 1133

 Score =  363 bits (932), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 119/640 (18%), Positives = 239/640 (37%), Gaps = 34/640 (5%)

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSP--PPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
                + E       V  +K+ +            R +++   +TE+     +  +    
Sbjct: 194 DALRTVLEDLPVAVFVRDDKHRLIYANKYYETFSGRARSEYLGMTEHEMFGPEGAEPIYQ 253

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR------------N 307
             L +    +  + +    + + +         +  + +   Y+                
Sbjct: 254 ENLLALRDGISVELESEMPSTSGHVYPVISRVNRVITADGRTYVVGSFSDISPLKEREKA 313

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGL 366
             +     +         +   PI   +  +   + Y N  F  + +    D  +    +
Sbjct: 314 LIASRKQEEVLHRDIESILRSLPIGVLILDNDHRILYVNDEFYSIWELPREDRFDGRPFI 373

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCI--AASARLHTIQWNRENSLAMTFIPFEKANQF 424
             +    +L   +  +      + R  +  A       + W    S+             
Sbjct: 374 DVIRRNHELGRYDGTRTPEELYAFRKHLFEAEEPEPIEVGWAGGKSVIFDSRRISNDRIL 433

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
                 + +   + +    +  +E     +     A S G+AI+ ++GII  +N A++ +
Sbjct: 434 LTYADISAVREREKEIHETRAALERVGEMMRDATHAMSQGLAIV-QDGIIKMSNDAMADI 492

Query: 485 FGYPVE--DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI---TLGSTKEEKLL 539
              P    +  +    +F         +    EIL         +    T+     E+ +
Sbjct: 493 LQIPPHYIEAGQGWLGMFEFCAARGDFHDAADEILQGWRANIAARQPISTVFHVGGERWV 552

Query: 540 SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
           ++   +        +     D++E K  + +L      AE     KS+FLA +SHEIRTP
Sbjct: 553 NMEATVS---SGQHWVALFTDVTELKSREEELRQLLSRAEAADRAKSEFLANMSHEIRTP 609

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           +  ++G +E++           R   + + I +SGN +L I+ND+LD SKI++G+M L  
Sbjct: 610 MNGVLGMAELLAKTNLDT----RQKTFIDIIVKSGNALLTIINDILDFSKIDAGQMKLRK 665

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
               L EAV +  +L+  +A EK I +    A ++P  ++ D    +QI  N++ NA+ F
Sbjct: 666 AAFDLVEAVEDVATLLSSHAAEKNIELLVRAAPDLPAAVIGDAGRFRQIVTNLVGNAVKF 725

Query: 719 TPSGGQ-IIISTTHTSNEEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T  G   + +     +  E+I  +R+ DTG+G+   +L+   + F Q+  S   R EGTG
Sbjct: 726 TERGHVFVDVGFQAAAGGEIIASIRIEDTGIGIPREKLDSVFEKFSQVDASSTRRHEGTG 785

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
           LGL +   +VD   G     S   +G++  +  P    + 
Sbjct: 786 LGLAITAGLVDLFGGYINAESEWGRGSVFTVNLPFAVAAA 825



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 57/447 (12%), Positives = 129/447 (28%), Gaps = 45/447 (10%)

Query: 173 REFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP 232
           RE S F G      +R   D      R DK+   L    + ++           +     
Sbjct: 44  REISDFIG----RRSRELFDRPEEEDREDKERRALVFGTEENAICFDAANLAHERIQIES 99

Query: 233 HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL 292
                +++  L  +   +      E     +   +      DF  +           G  
Sbjct: 100 FSPSPDRIYVLGMFEPRERRAAGNEANGGSSRTVNDSGVAADFARVREALEKLDHPIGIF 159

Query: 293 QNNSKESFEYLSHRNHPSLSAYFDE-------GENLTPETVDKCPIPFFV-YSHGNLFYA 344
             + +      ++R     +              +     ++  P+  FV      L YA
Sbjct: 160 AADGRPLVVNAAYRKGARPAPAHGSAWGKSVNELDALRTVLEDLPVAVFVRDDKHRLIYA 219

Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
           N  +   +     + +   G     +  P+ ++    + + L   D   +   + + +  
Sbjct: 220 NKYYETFSGRARSEYL---GMTEHEMFGPEGAEPIYQENL-LALRDGISVELESEMPSTS 275

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ-------LCSI 457
               +   +                  G   +    +  ++ +     Q       + SI
Sbjct: 276 ---GHVYPVISRVNRVITADGR-TYVVGSFSDISPLKEREKALIASRKQEEVLHRDIESI 331

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVED-ILRKPFTVFLEQNT----------P 506
           L +   G+ I++ +  IL  N     ++  P ED    +PF   + +N           P
Sbjct: 332 LRSLPIGVLILDNDHRILYVNDEFYSIWELPREDRFDGRPFIDVIRRNHELGRYDGTRTP 391

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQ 566
             +  +   +   +  + +E    G     K +   I   +   +    LT  DIS  ++
Sbjct: 392 EELYAFRKHLFEAEEPEPIEVGWAG----GKSV---IFDSRRISNDRILLTYADISAVRE 444

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVS 593
            + ++   +   E+      D    +S
Sbjct: 445 REKEIHETRAALERVGEMMRDATHAMS 471



 Score = 48.9 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/389 (7%), Positives = 80/389 (20%), Gaps = 31/389 (7%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTT 148
           D    L   ++      G    + +GM   ++      +P        L+   +   ++ 
Sbjct: 211 DDKHRLIYANKYYETFSGRARSEYLGMTEHEMFGPEGAEPIYQENLLALRDGISVELESE 270

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD----KKF 204
           +    G     P+      + + +        F  +   +         ++ +    +  
Sbjct: 271 MPSTSGHVY--PVISRVNRVITADGRTYVVGSFSDISPLKEREKALIASRKQEEVLHRDI 328

Query: 205 SHLHEIKKGHSSVEKEKYDIFS-----------QQSPPPHLRMKNKVSSLTEYYAHKDDV 253
             +         +    + I              +      R    V          D  
Sbjct: 329 ESILRSLPIGVLILDNDHRILYVNDEFYSIWELPREDRFDGRPFIDVIRRNHELGRYDGT 388

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL-- 311
              E+            E E          +       + N+                  
Sbjct: 389 RTPEELYAFRKHLFEAEEPEPIEVGWAGGKSVIFDSRRISNDRILLTYADISAVREREKE 448

Query: 312 ----SAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
                A  +    +  +          +   G +  +N +   + +          G L 
Sbjct: 449 IHETRAALERVGEMMRDATHAMSQGLAIVQDGIIKMSNDAMADILQIPPHYIEAGQGWLG 508

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
                    D +     +L        A            E  + M              
Sbjct: 509 MFEFCAARGDFHDAADEILQGWRANIAARQPISTVFHVGGERWVNM-------EATVSSG 561

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
                +  +  + +  + ++   + +  +
Sbjct: 562 QHWVALFTDVTELKSREEELRQLLSRAEA 590


>gi|186684847|ref|YP_001868043.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186467299|gb|ACC83100.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 738

 Score =  363 bits (932), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 125/507 (24%), Positives = 221/507 (43%), Gaps = 48/507 (9%)

Query: 327 DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
           +  P  F          AN +       +         G+++LLDAP             
Sbjct: 101 ENYPAYFQALEEERTIAANDAINDTRTQELSQPYLCVLGITSLLDAP------------- 147

Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
                  I    RL  +    E+   +     E+            +  E  +  + +  
Sbjct: 148 -------IWLEGRLVGVVC-HEHIGELRQWTLEEETFAGSIADFVTLAIEASERNVVQEA 199

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN-- 504
           +     +  +I E +S GI +I+ +  I+ TN  + ++ GY  E++  K FT ++     
Sbjct: 200 LRQSEAKFRAIFERSSIGIGLIDMKAQIVDTNPVLCEILGYSREELYAKRFTDYISIQKG 259

Query: 505 TPSVMNHYLTEI------------------LSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
              +    ++EI                       +  +E       K+  L+   I + 
Sbjct: 260 DLKLYKQLVSEIGKNSGKTSRFGFQISKLEEQAVDKHRIEMERRCLHKDGSLVWTHISVS 319

Query: 547 KLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
            +P S+     +   + DI+E K+ + KL  +++ AE  S  K++FLA +SHE+RTPL A
Sbjct: 320 VIPDSNGEPEFFLAMIEDITERKETELKLRASQEAAEAASRAKTEFLATMSHELRTPLNA 379

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           I+G S++++ +  G L N +  EY + I  SG  +L ++ND+LD+SK+E GK  L   P+
Sbjct: 380 IMGLSQLLQQEIVGSL-NEKQNEYVSCIYSSGEHLLALINDILDLSKVEEGKEELLLSPL 438

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
            + +  + AI  V+  A+EK + +           +AD R +KQ+ LN+L+NAI FTP G
Sbjct: 439 PVSDLCNYAIWTVRDRASEKGLKLTYKIDLQEDICIADERRIKQMLLNLLTNAIKFTPVG 498

Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
             + +         +   V DTG+G+   + +   +PF Q+ +    + EGTGLGL L +
Sbjct: 499 -NVSLVVKKVPQG-ITFTVSDTGIGIDPNQFQFLFEPFKQLDSRLNRQYEGTGLGLALTR 556

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFP 809
            +   + G   + ST  +G+   +  P
Sbjct: 557 KLARLHGGDVTVTSTLGEGSQFTLFLP 583


>gi|229523546|ref|ZP_04412951.1| hypothetical protein VCA_001112 [Vibrio cholerae bv. albensis
           VL426]
 gi|229337127|gb|EEO02144.1| hypothetical protein VCA_001112 [Vibrio cholerae bv. albensis
           VL426]
          Length = 1342

 Score =  363 bits (932), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 97/384 (25%), Positives = 172/384 (44%), Gaps = 10/384 (2%)

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
              +       R+ +RK+  +      IL+AT + +  ++ +G  L+ N     L G   
Sbjct: 461 AIQLSQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTVNAKFLDLMGLYN 520

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
            +++ K                    +      Q  E   +  T  ++ + +        
Sbjct: 521 NEVIDKEPQEIFPAEVAERFAAAHQVLTQQQSSQNYEVSLVDYTGVQREMLVYEASFSDR 580

Query: 550 FS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
               +     + D++E K+ +++L  AK+ A+  S  K DFLA +SHEIRTP+ AI+G +
Sbjct: 581 ADKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMA 640

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
            +  N            +Y   I+ S   +L I+ND+LD SK+E+GK+N+     +LD+ 
Sbjct: 641 HLALNTPLDTT----QRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDV 696

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI- 725
           +    ++V L A EK I        +IP  ++ D   + Q+ +N+  NA+ FT  G  + 
Sbjct: 697 LDNVTAVVSLKAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVL 756

Query: 726 --IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
              +S  +     +   V+DTG+G+   +L+     F Q  NS   +  GTGLGL ++K 
Sbjct: 757 SARVSQLNEQQVTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQ 816

Query: 784 MVDANMGKFYIFSTPAKGTLIEII 807
           +V+   G+  + S   KG+  E  
Sbjct: 817 LVELMGGQITVHSEEGKGSTFEFS 840



 Score = 44.2 bits (103), Expect = 0.079,   Method: Composition-based stats.
 Identities = 13/143 (9%), Positives = 43/143 (30%), Gaps = 3/143 (2%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + + A G    ++ +    +G Y  ++I     ++      +       +L +Q +   
Sbjct: 496 MYCLSADGKFLTVNAKFLDLMGLYNNEVIDKEPQEIFPAEVAERFAAAHQVLTQQQSSQN 555

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
                 ++ T +   + +       R  + +G    GI+       +     ++  +   
Sbjct: 556 YEVSL-VDYTGVQREMLVYEASFSDRADKVNGI--VGILLDMTERKEMEDELRKAKEAAD 612

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQ 228
            + + K    +    +       
Sbjct: 613 AMSQAKGDFLANMSHEIRTPMNA 635



 Score = 42.3 bits (98), Expect = 0.38,   Method: Composition-based stats.
 Identities = 22/228 (9%), Positives = 56/228 (24%), Gaps = 33/228 (14%)

Query: 286 KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYA 344
                 L + S       +            E   L  E +D  P P   + + G     
Sbjct: 449 HWLSQMLDDLSVAIQLSQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTV 508

Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
           N  FL L    + + I+              ++             +   + +  +  + 
Sbjct: 509 NAKFLDLMGLYNNEVIDKEP------QEIFPAEVAERFAAAHQVLTQQQSSQNYEVSLVD 562

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI------- 457
           +       + +      ++  +     GI  +  + +  + ++        ++       
Sbjct: 563 YTGVQREMLVYEASFS-DRADKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDF 621

Query: 458 LEATS-------DGIAI---------INREGI--ILSTNRAVSKLFGY 487
           L   S       + I           ++      +   N +   L G 
Sbjct: 622 LANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINESAKNLLGI 669


>gi|254443535|ref|ZP_05057011.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
 gi|198257843|gb|EDY82151.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
          Length = 1302

 Score =  363 bits (932), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 98/406 (24%), Positives = 186/406 (45%), Gaps = 13/406 (3%)

Query: 410  SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469
                  +     +     +    +       +     +  +V +   ++EA +D I  ++
Sbjct: 747  WNQQRALAVSGGSALALVLGIAWVTTLKRRVKKQTSLIRQQVDKEKQLIEAATDFIFTLD 806

Query: 470  REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
             +G   S N     + G+  ++I        L +    +    LT   +    ++L+   
Sbjct: 807  LQGNFTSFNSTCESITGFSRDEIKTMLVYDLLNKADAKLARLALTRRKTKAETKSLQSEI 866

Query: 530  LGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
            +   K+   L +   ++ L            M DI+  K+   +L+ A+  AE  +  KS
Sbjct: 867  I--RKDGSKLWVETSLRFLRTEGKVTGMFCIMRDITLRKKVHQELTRARDAAESNTKAKS 924

Query: 587  DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
             FLA +SHE+RTP+  +I  + ++ +       +    +Y + I  SG  +L ++ND+LD
Sbjct: 925  AFLATMSHELRTPMNGVISMANILLDTDL----DETQRDYTSTIRDSGESLLTLLNDILD 980

Query: 647  ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVK 705
            +SK E+GK+++    + L E +++++SL+   A +K I + T+  ++ P +L  D   +K
Sbjct: 981  LSKAEAGKLSIEPFELDLKELLNQSVSLLSTTAQQKNIQLETNVTDDTPTLLIGDAGRIK 1040

Query: 706  QIALNILSNAIHFTPSGG-QIIISTTHTSNEEV--ILRVRDTGVGMTNYELEKAMKPFGQ 762
            Q+ LN+  NAI FT  G  +I +S    +N+ V   + + DTGVG++     +  +PF Q
Sbjct: 1041 QVILNLTGNAIKFTEDGHVKINVSKLEDTNKHVNIRIEIEDTGVGISETAASRLFRPFEQ 1100

Query: 763  IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
               S   R  GTGLGL ++K +V+   G+  + S   KG+      
Sbjct: 1101 ADGSHSRRFGGTGLGLAISKEIVELMDGEIGVDSVLGKGSTFWFTL 1146



 Score = 57.7 bits (138), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 27/265 (10%), Positives = 71/265 (26%), Gaps = 28/265 (10%)

Query: 85   FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN--- 141
            F + +D  G     +       G    ++  M + D+ +      +  +  L   +    
Sbjct: 801  FIFTLDLQGNFTSFNSTCESITGFSRDEIKTMLVYDLLNK----ADAKLARLALTRRKTK 856

Query: 142  --TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199
              T   ++ +   +G+   + ++ +   + +   + +G   F I+    +         R
Sbjct: 857  AETKSLQSEIIRKDGS--KLWVETSLRFLRTE-GKVTGM--FCIMRDITLRKKVHQELTR 911

Query: 200  LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
                     + K    +    +            + M N +         +D        
Sbjct: 912  ARDAAESNTKAKSAFLATMSHELRTPMN----GVISMANILLDTDLDETQRDYTSTIRDS 967

Query: 260  PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
                S  + L +  D       + + + +   L+    +S   LS               
Sbjct: 968  G--ESLLTLLNDILDLSKAEAGKLSIEPFELDLKELLNQSVSLLSTTAQQKNIQLETNVT 1025

Query: 320  NLTPETVDKCPIPFFVYSHGNLFYA 344
            + TP  +        +   G +   
Sbjct: 1026 DDTPTLL--------IGDAGRIKQV 1042


>gi|91772955|ref|YP_565647.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanococcoides burtonii DSM 6242]
 gi|91711970|gb|ABE51897.1| Multisensor signal transduction histidine kinase [Methanococcoides
           burtonii DSM 6242]
          Length = 765

 Score =  363 bits (932), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 121/508 (23%), Positives = 217/508 (42%), Gaps = 12/508 (2%)

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIA 363
                +    ++          D+           GN+ Y N  F  L  Y   + I   
Sbjct: 255 IGEDVTEKRQYEINLRKFKSISDRANYGSATTDLHGNVTYINDYFAYLHGYSPDELIGKN 314

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
             +         SD    +   +        + +            +  M        ++
Sbjct: 315 LSI-------FHSDGQLEEVHRVNEELMENGSYTNIEIWHTHKNGTTFPMLMSAVVMKDE 367

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
                  +    +    +  + ++     +  S++E  +DGI II ++G+I   NR + +
Sbjct: 368 GRNPQYLSASAVDITHLKNIEDRIYESEKKYSSLVENGNDGIIII-QDGLIKYANRKMIE 426

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNH-YLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
           +  Y  E+++  PF  F+      ++   Y   +   D+    E     +      + L 
Sbjct: 427 MSEYSHEELIENPFIDFVSPKYIEIVKDRYQKRLNGEDIPSHYEIEIEANDDRTIPVDLS 486

Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
           + I            + DIS+WKQ K  L +A+  AE+ +  K++FLA VSHE+RTPL  
Sbjct: 487 VSIINYQGLLATMAILRDISDWKQAKAALIYARLTAEEANRTKTEFLANVSHELRTPLNP 546

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           IIGFS+++ +   G L N +  +YA  I ++G+ +L IVN ++D+  I   K++L  +  
Sbjct: 547 IIGFSDILVSGVAGEL-NEKQKKYALNIKQNGSKLLTIVNRIIDMCNIRISKLDLKCDCF 605

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
            + E + E   L+   A +K+IL+       +  I+AD    ++I  N++ NAI FTPSG
Sbjct: 606 KVIEMIIETKDLLNSIALKKKILLDLHIDPELNEIVADKTKTREILYNLIENAIKFTPSG 665

Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
           G + I      ++ V + V DTG+G+ + ++    +PF Q+ +S   + +G GLGL L K
Sbjct: 666 GHVSIH-AIQKDDYVQISVTDTGIGIAHSDIGIIFRPFLQVDSSTTRQYDGVGLGLMLVK 724

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             V    G  ++ S   KG+      P+
Sbjct: 725 EYVKLQGGDIWVDSELGKGSTFTFTLPM 752



 Score = 76.2 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/271 (14%), Positives = 95/271 (35%), Gaps = 15/271 (5%)

Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
             +   G + Y N ++    K   +D  + + G + L    + +  +A    +  +    
Sbjct: 26  VIINPDGFITYTNKNWESFAKDNGLDPSKCSEGTNYLKICDEANGEHATGASIEAKGIID 85

Query: 393 CIAASARLHTIQW-----NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
            I  +  ++ I++     + +    +   P  K                  D +  + K+
Sbjct: 86  VINGNKDIYKIEYPCHSPDEKRWFLLKATPLSK----VYPTDVLLQHINITDRKEVQIKL 141

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
           +    Q  ++LE        ++  G ++  N     + G+  E+I+ K +      +   
Sbjct: 142 KNSEQQFRNVLENIRLISITLDTIGNLIFCNEYFLNITGWKKEEIIHKNWFELFVSHDIK 201

Query: 508 VMNH--YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISE 563
              +  + T I +       E   L    E+K+++   ++ K         S    D++E
Sbjct: 202 SEINDMFRTTIKNNSYPTYYENEILTKNCEKKIIAWNNVVNKDQNDKILSISCIGEDVTE 261

Query: 564 WKQEKNKLSHAKKIAEKES--SHKSDFLARV 592
            +Q +  L   K I+++ +  S  +D    V
Sbjct: 262 KRQYEINLRKFKSISDRANYGSATTDLHGNV 292



 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/241 (9%), Positives = 62/241 (25%), Gaps = 5/241 (2%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            D HG +  I++      G    ++IG  L        ++  + + + L    ++     
Sbjct: 286 TDLHGNVTYINDYFAYLHGYSPDELIGKNLSIFHSDGQLEEVHRVNEELMENGSYTNIEI 345

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
            W         P+ ++A+ +    R         +        +        +KK+S L 
Sbjct: 346 -WHTHKNGTTFPMLMSAVVMKDEGRNPQYLSASAV--DITHLKNIEDRIYESEKKYSSLV 402

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY--AHKDDVLKTEKYPLLTSEE 266
           E       + ++    ++ +         ++      +        +   +         
Sbjct: 403 ENGNDGIIIIQDGLIKYANRKMIEMSEYSHEELIENPFIDFVSPKYIEIVKDRYQKRLNG 462

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
             +P   +      +  T          N +     ++     S              T 
Sbjct: 463 EDIPSHYEIEIEANDDRTIPVDLSVSIINYQGLLATMAILRDISDWKQAKAALIYARLTA 522

Query: 327 D 327
           +
Sbjct: 523 E 523


>gi|297565379|ref|YP_003684351.1| multi-sensor signal transduction histidine kinase [Meiothermus
           silvanus DSM 9946]
 gi|296849828|gb|ADH62843.1| multi-sensor signal transduction histidine kinase [Meiothermus
           silvanus DSM 9946]
          Length = 827

 Score =  363 bits (932), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 106/619 (17%), Positives = 217/619 (35%), Gaps = 64/619 (10%)

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
                 + +  +    V   K  +           +   +++ +  +       +T+   
Sbjct: 273 QGSSDPMAQAARLRRPVLATKGQLPPWVESESMAFVP--ITAFSPTFLEPGKPAQTQ-TD 329

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
           +      ++        + +      Q                 +     LS       +
Sbjct: 330 MEVLGVVAVDHGPKGTEVAVEDLWYVQLL--CNTAGVAIKNARVYAEQARLSEALALERS 387

Query: 321 LTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
              E +++      V       +AN         +    +        L           
Sbjct: 388 KLTEALEQMGDGVIVLEEDR-GFANRLAREALGLEREVGLGDLP--DYLYP--------- 435

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
                         A   R   ++        +            E   +  +  E    
Sbjct: 436 --------------ALEGRELEVELAGRAFSVL---------GTREGRLRVLVLHEITQR 472

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           ++ ++ +     +  +IL+A  D + ++N+EG I     A  +    P +  L +  +  
Sbjct: 473 KLAEQAIRESEARNRAILQAIPDMLFVVNQEGRIQEYKSAREEPLSVPGQFFLGRTLSEV 532

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
           L     +     L   L+       E        + +L        ++       L + D
Sbjct: 533 LPPEAANRAMEALHTALTQGSLLFFEYQIRT---DGRLRDYEGRAVQIAPQQG-LLIIRD 588

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           ++  K  +                KS+F+A VSHE+RTPL AI+GF+E++ +   G +  
Sbjct: 589 VTPQKDAE--------------RIKSEFIAAVSHELRTPLAAIMGFAELLTS---GEIPL 631

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
               E+   I  +G  + ++V++LLD S++E+G+  ++  PV L+E +          A 
Sbjct: 632 EEGQEFLRIIYDNGRRLKNMVDNLLDSSRLEAGRFEVYKRPVQLEETLRGVADSFTGVAQ 691

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
             ++         +P + AD   + Q+  N+LSNA  FTP GG++ +       + + + 
Sbjct: 692 LSQVEFHREIPP-LPPVEADPDRIGQVMGNLLSNAFKFTPKGGRVTLRAMLE-GDSLKIE 749

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V DTG G+   E  +  + +G+  ++      GTGLGL ++KA+V+A+ G+ ++ S   K
Sbjct: 750 VEDTGPGIPESERSRLFQRYGRTQSAVSRGVSGTGLGLYISKAIVEAHGGRIWVESEVGK 809

Query: 801 GTLIEIIFPLYDTSHPHDC 819
           GT   +  PL+  + P   
Sbjct: 810 GTTFSLTLPLH-AAQPQPA 827


>gi|254465258|ref|ZP_05078669.1| multi-sensor hybrid histidine kinase [Rhodobacterales bacterium
           Y4I]
 gi|206686166|gb|EDZ46648.1| multi-sensor hybrid histidine kinase [Rhodobacterales bacterium
           Y4I]
          Length = 985

 Score =  363 bits (932), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 111/598 (18%), Positives = 213/598 (35%), Gaps = 39/598 (6%)

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
             +          + P       + L        F T       +             A 
Sbjct: 249 SWQLAARPAGGWQAQPGNLWQLRLALLAAGTLIVFPTFLAGRLSAARQTVIGQLRRREAE 308

Query: 315 FDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVD-DIEIAGGLSTLLDA 372
            +         V    +  +    GN     +     L         +  +  ++ L   
Sbjct: 309 LEAVSRRLEIAVKTSRVGIWECDAGNKRVSWDSRMHELYGVPREQGPLAGSAWIAKLHPQ 368

Query: 373 PKLS-----------DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM---TFIPF 418
            +              +N      +   D +     A        +  S  +     +  
Sbjct: 369 DRDRVVKSLEAAERSKSNFASEFRILLDDGSVKHIRALASPFTDTQGRSWMIGVNWNVSE 428

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKME----------IEVMQLCSILEATSDGIAII 468
           +   +         +   + + +  KR +E           E+ +L  + +  SD I + 
Sbjct: 429 DVRLREELIHANQALSERNTELKEGKRALEDAHAELQKQQAELHRLSLVAKHASDSIILT 488

Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV-MNHYLTEILSLDLRQTLEK 527
           +    IL  N A ++  GY   + + +  +  L+     + +   +       +R     
Sbjct: 489 DASRKILWVNDAFTRATGYSAGEAIGRTPSDLLDGPDTDLSVVREMNRHKDGGIR--YHN 546

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
             L  TK  + +     I  +  +            DI+  KQ + +L+ AK  AE    
Sbjct: 547 EVLNYTKSGEEVWFDTNIVPVTGADGEVDLIIGIERDITRSKQRERELAEAKLAAEHADR 606

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
            KS+FLA +SHEIRTP+  IIG ++++              +    I  S   +L I+ND
Sbjct: 607 AKSEFLANMSHEIRTPMNGIIGMADLLAEAELTADD----QQNVETIRSSAQALLKIIND 662

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLR 702
           +LD+S++E+GK  +  E  +L + +  A  L +  A EK + ++ S+AN +P  +  D  
Sbjct: 663 ILDLSRLEAGKFAISREDFNLRDCIGGAADLFRPKALEKGLSMQVSYANGLPDRLHGDDG 722

Query: 703 SVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761
            ++QI +N++ NA+ FTP G   + +S        +++ V D+G+G++  + +     F 
Sbjct: 723 RLRQILVNLIGNAVKFTPDGKIAVRVSQAGEDPCRLVVEVEDSGIGISETQAKHIFDRFT 782

Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819
           Q   +      GTGLGL ++  +     G   + S P KG+   +   +   S   D 
Sbjct: 783 QADAATTKAFGGTGLGLTISSMLAKRMGGGITVQSQPGKGSCFRLELQMVPASQAVDA 840



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/257 (9%), Positives = 60/257 (23%), Gaps = 20/257 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID--PNNHIGDLLKRQNTWYGK 146
            DA   +  +++   +  G  A + IG    D+ D    D      +         ++ +
Sbjct: 488 TDASRKILWVNDAFTRATGYSAGEAIGRTPSDLLDGPDTDLSVVREMNRHKDGGIRYHNE 547

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
              +   G    V  D   +P+   + E       GI                      H
Sbjct: 548 VLNYTKSGE--EVWFDTNIVPVTGADGEVD--LIIGIERDITRSKQRERELAEAKLAAEH 603

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
               K    +    +            + M + ++         D            +  
Sbjct: 604 ADRAKSEFLANMSHEIRTPMN----GIIGMADLLA--EAELTADDQQNVETIRSSAQALL 657

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
             + +  D   +   ++        +        + +            ++G ++     
Sbjct: 658 KIINDILDLSRLEAGKF-------AISREDFNLRDCIGGAADLFRPKALEKGLSMQVSYA 710

Query: 327 DKCPIPFFVYSHGNLFY 343
           +  P        G L  
Sbjct: 711 NGLPDRLH-GDDGRLRQ 726


>gi|298528361|ref|ZP_07015765.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298512013|gb|EFI35915.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 1175

 Score =  363 bits (932), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 94/571 (16%), Positives = 200/571 (35%), Gaps = 53/571 (9%)

Query: 276 HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF- 334
           H +       + +     +                               +D      + 
Sbjct: 94  HEVKGLDLGAEDFVHKPFHEGVLLARVGQILRRLQAEEQLRTSRESHRMLLDSIETQVWH 153

Query: 335 VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394
           +         N +      +   +       +   L    ++        +  R ++  I
Sbjct: 154 LTDEHTYGAVNRAHADFFGFSPSEI--ANRDIDQFLPEGMVAAIRKGNREVFSRKEQIHI 211

Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
                   +         ++     K ++            +         K+++   +L
Sbjct: 212 E-----EWVSNASGEPRLLSITKTPKIDEQGNVDYVVCSAEDMTAQWKATEKLKVSEEKL 266

Query: 455 CSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKP--FTVFLEQNTPSVMNH 511
            SIL    D +  I+  +   L  + +  KL+G    +    P  F          +   
Sbjct: 267 SSILNNMKDVVWSISWPDLRHLYLSPSSEKLYGISAHEFYENPTLFKDVTHPEDRHLTKK 326

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQE 567
            + ++L         +       +  ++ +    K +   +           D++E  + 
Sbjct: 327 AVEQLLEEGEAV---RECRIIRPDGSIVWINDTSKMIYDDNQQPARVDGVTRDVTELVKA 383

Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
           +  L  AK+ AE+ +  KSDFLA +SHEIRTP+  +IG + ++ +       +     YA
Sbjct: 384 RQDLIQAKEHAEEATRAKSDFLANMSHEIRTPMNGVIGMTGLLLDTDL----DSEQQHYA 439

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
             +  S   +L ++ND+LD SKIE+G++++      L+  + +   ++ + A EK + + 
Sbjct: 440 RTVRSSAESLLTVINDILDFSKIEAGRLDIETVDFDLEAMLRDFSGMMAVKAEEKGLELI 499

Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIIS----------------- 728
            S   N+P  +  D   ++QI +N++ NA+ FT  G  +I +S                 
Sbjct: 500 CSMDPNVPSMVRGDSGRLRQILMNLVGNAVKFTEHGEVEIRVSKSEVVDQRSEVSDQPAN 559

Query: 729 -TTHTSNE-----------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
             +H               E+  ++RDTG+G+   + +   + F Q+  S   +  GTGL
Sbjct: 560 RLSHEQTGIKDQYGDSRIVELCFQIRDTGIGIPQDKQDSLFESFSQVDASTTRKFGGTGL 619

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           GL +++ + +   G   + S   +G+     
Sbjct: 620 GLAISRQLAEMMGGTAGLESVEDQGSTFWFT 650



 Score = 45.0 bits (105), Expect = 0.052,   Method: Composition-based stats.
 Identities = 21/258 (8%), Positives = 57/258 (22%), Gaps = 19/258 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR-QNTWY 144
            W++        ++       G    ++    +          P   +  + K  +  + 
Sbjct: 151 VWHLTDEHTYGAVNRAHADFFGFSPSEIANRDIDQFL------PEGMVAAIRKGNREVFS 204

Query: 145 GKTTL----WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
            K  +    W    +     + +   P                              K  
Sbjct: 205 RKEQIHIEEWVSNASGEPRLLSITKTPKIDEQGNVDYV--VCSAEDMTAQWKATEKLKVS 262

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH------LRMKNKVSSLTEYYAHKDDVL 254
           ++K S +    K                SP              +  +L +   H +D  
Sbjct: 263 EEKLSSILNNMKDVVWSISWPDLRHLYLSPSSEKLYGISAHEFYENPTLFKDVTHPEDRH 322

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
            T+K      EE     +      + +          + +++++           +    
Sbjct: 323 LTKKAVEQLLEEGEAVRECRIIRPDGSIVWINDTSKMIYDDNQQPARVDGVTRDVTELVK 382

Query: 315 FDEGENLTPETVDKCPIP 332
             +      E  ++    
Sbjct: 383 ARQDLIQAKEHAEEATRA 400


>gi|114566853|ref|YP_754007.1| signal transduction histidine kinase-like protein [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
 gi|114337788|gb|ABI68636.1| PAS/PAC sensor hybrid histidine kinase [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
          Length = 763

 Score =  363 bits (932), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 113/499 (22%), Positives = 204/499 (40%), Gaps = 22/499 (4%)

Query: 317 EGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
           E  +     ++            GN+   NP    LT +   + +     L  +      
Sbjct: 18  EERDHLQIILESIGDGIITTDMEGNISMMNPVAEKLTGWSREEALGK--HLYEVFRIIDN 75

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
           +    ++        R       R   +      +   +       ++  +      +  
Sbjct: 76  TSKQPLENPFDNVFTRGLSQGLLRNSALLDRDGETRFASACASPIIDKNQKRAGMVVVFR 135

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
           +    + N    E E+  L  +L+ +S+ I I + +GI+   N   ++L GY   +++ +
Sbjct: 136 DIDRIKKN----EDEIRCLSWVLQLSSNAIIIFDIQGIVQFINSRFTQLTGYEAYEVVNR 191

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--C 553
              +    N   +    +   L        E        E    S+     +        
Sbjct: 192 NLRLI---NNLPLDVEKIFARLRAGEEWHDEVFFHNRQLEPCWWSIYCTAVRDEEDKITS 248

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
           Y   + DISE KQ +  L  AK+ AE  +  K++FLA +SHEIRTPL AIIG +    + 
Sbjct: 249 YCSIIQDISEHKQAEENLKKAKEAAEVANRAKAEFLANMSHEIRTPLNAIIGMT----SL 304

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
                  P   E    I  +G+ +L I++++LD SKIE+GK+ +     +L E + + I+
Sbjct: 305 SLLSNPEPDQKENLEIIKMAGDTLLSIIDNILDFSKIEAGKLTVEKINFNLHELIEKNIT 364

Query: 674 LVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
           + +  A EK +L+       IP ++  D   ++Q+  N++ NAI FT  G ++ +     
Sbjct: 365 IHKARAQEKGLLLLYYIDPAIPVQVNGDPYRLQQVFNNLIGNAIKFTDHG-EVEVRLKLL 423

Query: 733 S--NEEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
              ++ ++L   V DTG G+T  + EK  + F Q  +S      GTGLGL ++K +V+  
Sbjct: 424 DIFDDHIVLQASVADTGRGITAGQQEKMFESFYQGDSSISRTYGGTGLGLNISKKIVEMM 483

Query: 789 MGKFYIFSTPAKGTLIEII 807
            GK ++ S    G+     
Sbjct: 484 QGKIWLESDIESGSTFYFT 502



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 75/222 (33%), Gaps = 33/222 (14%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            ++  E   L  ILE+  DGI   + EG I   N    KL G+  E+ L K         
Sbjct: 14  SRILEERDHLQIILESIGDGIITTDMEGNISMMNPVAEKLTGWSREEALGKHLYEVFRII 73

Query: 505 T---PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLT 557
                  + +    + +  L Q L + +    ++ +          +   +       + 
Sbjct: 74  DNTSKQPLENPFDNVFTRGLSQGLLRNSALLDRDGETRFASACASPIIDKNQKRAGMVVV 133

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
             DI   K+ ++++     + +  S+    F              I G  + I ++    
Sbjct: 134 FRDIDRIKKNEDEIRCLSWVLQLSSNAIIIF-------------DIQGIVQFINSRFTQL 180

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDL-LD----ISKIESGK 654
            G   Y           N  L ++N+L LD     +++ +G+
Sbjct: 181 TGYEAY--------EVVNRNLRLINNLPLDVEKIFARLRAGE 214



 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/287 (11%), Positives = 75/287 (26%), Gaps = 25/287 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH---IDPNNHIGDLLKRQNTWYG 145
            D  G +  ++    K  G    + +G  L +V  I+      P  +  D +  +    G
Sbjct: 37  TDMEGNISMMNPVAEKLTGWSREEALGKHLYEVFRIIDNTSKQPLENPFDNVFTRGLSQG 96

Query: 146 KTT---LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
                 L   +G   +      A PI  +N++ +G     +              + L  
Sbjct: 97  LLRNSALLDRDGETRFAS--ACASPIIDKNQKRAGM--VVVFRDIDRIKKNEDEIRCLSW 152

Query: 203 KFSH------LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256
                     + +I+     +      +   ++     R    +++L          L+ 
Sbjct: 153 VLQLSSNAIIIFDIQGIVQFINSRFTQLTGYEAYEVVNRNLRLINNLPLDVEKIFARLRA 212

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
            +            ++  FH   L       Y   +++   +   Y S     S     +
Sbjct: 213 GEE---------WHDEVFFHNRQLEPCWWSIYCTAVRDEEDKITSYCSIIQDISEHKQAE 263

Query: 317 EGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIA 363
           E      E  +        +              +    S+  +   
Sbjct: 264 ENLKKAKEAAEVANRAKAEFLANMSHEIRTPLNAIIGMTSLSLLSNP 310


>gi|167464857|ref|ZP_02329946.1| two-component sensor histidine kinase [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 582

 Score =  363 bits (931), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 94/435 (21%), Positives = 188/435 (43%), Gaps = 34/435 (7%)

Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
             +         R+  +     N      +P    ++  E         E++  ++    
Sbjct: 173 RIARGITRPIE-RITRVARQMANQQYAARVPEAGNDEVGELARTINRMAENLQIQMQH-- 229

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
           +     +L  +LE    G+ ++++ G I   NR+   + GY   ++L K +   L+    
Sbjct: 230 IRENEYRLQGVLENMVSGVMMVDQRGTITLVNRSAEDILGYSSHELLNKSY---LDAGFQ 286

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEW 564
                 L + +    R  + +  +    +E++L + +              + +HDI+  
Sbjct: 287 LEFTALLADAIETHTR--VREELMLHFPQEQILEVHVSPIVQGDGQRKGVLVVLHDITAV 344

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           ++ +                +S+F+A VSHE++TP+ A+ GF+E +              
Sbjct: 345 RRLE--------------RIRSEFVANVSHELKTPVAAVKGFAETLMAGAL--EDKEMAR 388

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
            +   I    + +  ++ D+L++SKIES ++ L F PV ++  V  +I +++  A +K I
Sbjct: 389 SFLQIIYDESDRLNRLIGDILELSKIESKRIPLQFSPVDVESIVENSIQMMKAEAEKKHI 448

Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-------SNEEV 737
            + +   N +  I AD   ++QI +N+LSN I +TP GG++ I             NE +
Sbjct: 449 TLESCVENEL-YIEADEDRLRQILINLLSNGISYTPEGGRVSIGVEFVPSLDDNPDNERM 507

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
            +R+ DTG+G+   +L +  + F ++  ++     GTGLGL + K + + + G   + S 
Sbjct: 508 RIRISDTGIGIPEKDLPRIFERFYRVDKARSRSSGGTGLGLSIVKHLTELHHGTISVESE 567

Query: 798 PAKGTLIEIIFPLYD 812
             KGT   I  P+  
Sbjct: 568 AGKGTTFNIELPVIQ 582



 Score = 43.1 bits (100), Expect = 0.23,   Method: Composition-based stats.
 Identities = 19/168 (11%), Positives = 49/168 (29%), Gaps = 15/168 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D  G +  ++      +G  + +++     D      ++    + D ++   T   +  
Sbjct: 251 VDQRGTITLVNRSAEDILGYSSHELLNKSYLD--AGFQLEFTALLADAIETH-TRVREEL 307

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           +           +++   PI   + +  G     ++H            +RL++  S   
Sbjct: 308 MLHF---PQEQILEVHVSPIVQGDGQRKGV--LVVLHDITAV-------RRLERIRSEFV 355

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256
                           F++      L  K    S  +    + D L  
Sbjct: 356 ANVSHELKTPVAAVKGFAETLMAGALEDKEMARSFLQIIYDESDRLNR 403


>gi|239907599|ref|YP_002954340.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
            RS-1]
 gi|239797465|dbj|BAH76454.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
            RS-1]
          Length = 1511

 Score =  363 bits (931), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 125/728 (17%), Positives = 246/728 (33%), Gaps = 98/728 (13%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147
             D    ++ ++ +  +       ++       ++         + +   L+    W G+ 
Sbjct: 365  TDRKTRIRWVNPQFERVTQYSLAEVKRRDPNVLASGATPREVYDEMRRSLRAGQPWSGEF 424

Query: 148  TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                 +G++ +  + ++  P+        G+ G                   L +  S  
Sbjct: 425  VNRRKDGSHYHARVAIS--PVNDDKGNLLGYVG-------------------LQEDVSEY 463

Query: 208  HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
              +     S  + +  +    +   +    ++++                          
Sbjct: 464  KRLLSRMESQLRLEAGLTHFAASFKNEFDPDRLA-------------------------- 497

Query: 268  SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
            +L   E    ++L                   F            A     +++      
Sbjct: 498  ALALNELVRFLSLPYAAVHVRCRESSAQVLARFGGDRPPGDDISGACRPLVDDVIA---- 553

Query: 328  KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
                       G  F    S   L +  SV     A GL+ +   P     +A+  + + 
Sbjct: 554  ----------SGRPF----SLRDLPETASVALAGGAAGLTEIRLLPLGDGQSAVGALEI- 598

Query: 388  RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
                        L  +    +  L              E      +  +  +    ++ +
Sbjct: 599  ----------GLLRELSEADQRYL---------DKARAELALALKLALDIGERVRAQQAL 639

Query: 448  EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF--LEQNT 505
              +      +L+   + +     +   L  NRA  + FG   E+++ K       L +  
Sbjct: 640  ADQNAFQQVLLDTIPNPVFYKGADTRFLGFNRAYEETFGVRREELVGKRVLDLDYLPEAD 699

Query: 506  PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISE 563
                     E ++       E     +          +   +           T  DISE
Sbjct: 700  RLAYQREDEEAIAAGGSVRREMRIPFADGAMHETLYYVSGFRRADGSPGGLVGTFVDISE 759

Query: 564  WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             K  +  L+ AK+ A + +  KSDFLA +SHEIRTP+ AI+G S +       P    R 
Sbjct: 760  QKAVERALAAAKEAAVEATLLKSDFLANMSHEIRTPMNAIVGLSHLALTTELTP----RQ 815

Query: 624  IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
             +Y   I ++   +L I+ND+LD SKIE+GK+++      L   +    +L++  A  K 
Sbjct: 816  RDYMGKIQQASQHLLGIINDILDFSKIEAGKLSIERTDFDLSAVLENVAALIREKAEAKG 875

Query: 684  ILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEE--VIL 739
            + +    A ++P+ ++ D   + QI +N  +NA+ FT +G   I +        E  +  
Sbjct: 876  LELLFDVAADVPQDLVGDPLRLGQILVNYANNAVKFTEAGEVGIRVRLIAEDGGEAVLRF 935

Query: 740  RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
             VRDTG+G+T  ++ +  + F Q   S   R  GTGLGL ++K + +   G+  + STP 
Sbjct: 936  EVRDTGIGLTQEQIARLFQSFSQADASTTRRFGGTGLGLAISKRLAELMRGEVGVDSTPG 995

Query: 800  KGTLIEII 807
             G+     
Sbjct: 996  AGSTFWFT 1003



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/379 (11%), Positives = 95/379 (25%), Gaps = 34/379 (8%)

Query: 241 SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK--- 297
           ++   Y      V++       TSE  ++  +  F      +       G          
Sbjct: 116 AAEGTYLIEAGGVIRIHDTEGSTSEGLNVAFRPYFRQAMAGRPNIYAAVGKQSQERGLYY 175

Query: 298 ---ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKY 354
                   L       +         L             +   G  F A      L   
Sbjct: 176 AAPVRDGALPTSPVIGVIMTKIGAAFLDALLAGSGSQAVLLSPEGVAFAATRP-EWLYAV 234

Query: 355 KSVDDIEIAGGLST--LLDAPKLSDNNAIKPVM--LYRSDRTCIAASARLHTIQWNR--E 408
                      +               A  P       +D    A S    ++ W+    
Sbjct: 235 APAATEGKPAAMDRASRFGDVFKGRQAATLPFSPDQDTADIAGAAWSLATQSVDWDDPEG 294

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDV-----------DTRINKRKMEIEVMQLCSI 457
           N   +            + +   G+                  R  + +       L   
Sbjct: 295 NWTLVVLQDTATWFPPAKRLLTAGLTAAGTLLVCLTLVALDRVRQRRARAAARFRTLGVA 354

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
           +E +   + + +R+  I   N    ++  Y + ++ R+   V     TP  +   +   L
Sbjct: 355 MEVSPLAVVVTDRKTRIRWVNPQFERVTQYSLAEVKRRDPNVLASGATPREVYDEMRRSL 414

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWK----QEKN 569
                 +     +   K+      R+ I  +         Y     D+SE+K    + ++
Sbjct: 415 RAGQPWSG--EFVNRRKDGSHYHARVAISPVNDDKGNLLGYVGLQEDVSEYKRLLSRMES 472

Query: 570 KLSHAKKIAEKESSHKSDF 588
           +L     +    +S K++F
Sbjct: 473 QLRLEAGLTHFAASFKNEF 491



 Score = 45.8 bits (107), Expect = 0.031,   Method: Composition-based stats.
 Identities = 33/419 (7%), Positives = 94/419 (22%), Gaps = 51/419 (12%)

Query: 86   TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP---NNHIGDLLKRQNT 142
             +   A       +    +T G    +++G R+ D+  +   D         + +    +
Sbjct: 657  VFYKGADTRFLGFNRAYEETFGVRREELVGKRVLDLDYLPEADRLAYQREDEEAIAAGGS 716

Query: 143  WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
               +  +   +G        ++       +    G    G                   +
Sbjct: 717  VRREMRIPFADGAMHETLYYVSG--FRRADGSPGGL--VGTFVDISEQKAVERALAAAKE 772

Query: 203  KFSHLHEIKKGHSSVEKEKYDIFSQQ---------SPPPHLRMKNKVSSLTEYYAHKDDV 253
                   +K    +    +                +     R ++ +  + +   H   +
Sbjct: 773  AAVEATLLKSDFLANMSHEIRTPMNAIVGLSHLALTTELTPRQRDYMGKIQQASQHLLGI 832

Query: 254  ----------------LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297
                            ++   + L    E+      +       +          Q+   
Sbjct: 833  INDILDFSKIEAGKLSIERTDFDLSAVLENVAALIREKAEAKGLELLFDVAADVPQDLVG 892

Query: 298  ESFE----YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY--SHGNLFYANPSFLLL 351
            +        +++ N+        E         +        +      +         L
Sbjct: 893  DPLRLGQILVNYANNAVKFTEAGEVGIRVRLIAEDGGEAVLRFEVRDTGIGLTQEQIARL 952

Query: 352  TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD---------RTCIAASARLHT 402
             +  S  D       +       L    + +   L R +          +    +ARL  
Sbjct: 953  FQSFSQAD----ASTTRRFGGTGLGLAISKRLAELMRGEVGVDSTPGAGSTFWFTARLRK 1008

Query: 403  IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
             +      L    +   +     +N     +  + +       +      +  S+LEA 
Sbjct: 1009 SRKRHRVLLPDPDLRGRRVLVVDDNESARTVLTDMLAAMSFSVEAAASGQEALSVLEAA 1067


>gi|119358118|ref|YP_912762.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium phaeobacteroides
           DSM 266]
 gi|119355467|gb|ABL66338.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium phaeobacteroides
           DSM 266]
          Length = 1053

 Score =  363 bits (931), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 130/747 (17%), Positives = 249/747 (33%), Gaps = 60/747 (8%)

Query: 92  HGY---LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147
            G    LK ++    + +     +++G  L  +   +        +  + K   T +   
Sbjct: 190 DGRDFILKALNPAAERIVHLTGAQVVGKTLLTLFPNMGSTVLPAALCRVWKTGRTEHLAP 249

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
             +  +    +    +  +P    + E        +              +  +++F  L
Sbjct: 250 FYYQDDIRQGWRENHIYKIP----SGEI-----VALFDDVTERKQIEDSLRESEERFRVL 300

Query: 208 HEIKKGHS-------SVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT-EKY 259
            E  +            E  K+ + +  +       + ++  +        +   T    
Sbjct: 301 FENIRDGVFVHPMITPSEPGKFAMVNPSACDILGYTQEELLGMGPRELDDAESSVTYIPE 360

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES---FEYLSHRNHPSLSAYFD 316
            +    E      E             +    +   S                       
Sbjct: 361 AMKRLMEDGCVLFEAVQRDRKGNRIPVEVNANIVELSGRPYIVSSVRDITLRKQHENKLL 420

Query: 317 EGENLTPETVDKCPIPFFVYS---HGNLFY--ANPSFLLLTKYKSVDDIEIAGG--LSTL 369
           E         D      FV      G+  Y   N    +LT  K+ +    +    +   
Sbjct: 421 ESTQFLKSIYDGVNNSVFVVDVQQDGSYRYKGINRMHEILTGIKNEEITGKSPDEIIDAP 480

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
                +   +A             +                     +     +       
Sbjct: 481 FAESVIRRYDACIQSGSTIQYEELLPFK----------GRETYWETVLTPVRDNVGHIYR 530

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
             G   +    +I+++++     +L   +E +   + I +  G I   N   ++L GY V
Sbjct: 531 IIGTSTDITKRKISEQRLR----KLSVAVEQSPAVVVITDYMGNIEYVNPKFTQLTGYTV 586

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
            + +     +     TP    + L + +                K   +     +I  + 
Sbjct: 587 REAVGNNPNILQSGLTPRETFYELWDTILSG--GVWHGEFYNRKKNGDIYIESAVISPIF 644

Query: 550 FSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
                   +     DI+E K+  ++L  AK+ AE+    K+ FLA +SHEIRTP+  I+G
Sbjct: 645 NKEGSITNFVAVKEDITEKKKLWSELIAAKEKAEESDRLKTAFLANISHEIRTPMNGILG 704

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
           FSE++K      L      EY N I++SG  +L ++N+L+DIS+IESG   L     S++
Sbjct: 705 FSELLKEPH---LSGEEQTEYINLINQSGQRMLHLINELVDISRIESGDTFLQITETSIN 761

Query: 666 EAVSEAISLVQLYANEKRILIR--TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
             + +  +  +  A +K +L       ++    I  D   V QI  N++ NA+ FT  G 
Sbjct: 762 RLMHDIYAFFRPEAAKKGLLFECIVGLSDLFSVIDTDSSKVNQILTNLVQNALKFTTEGS 821

Query: 724 QIIISTTHT-SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
              +   +T  N+ +   V D+G  + +   EK    F Q+ NS   R EG GLGL ++K
Sbjct: 822 ---VDFRYTLKNDCLEFYVTDSGACIPSEMKEKIFDRFRQVDNSLTRRYEGAGLGLSISK 878

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFP 809
           A ++   GK ++ S   +G       P
Sbjct: 879 AYIEMLGGKIWVESIEGRGNRFVFTLP 905



 Score =  117 bits (292), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 61/528 (11%), Positives = 150/528 (28%), Gaps = 43/528 (8%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN---NHIGDLLKRQNTWYGKT 147
           A   +K+    L   +G    +++  +   +      D +   + +   ++   T   +T
Sbjct: 61  ADSVIKDADSALCSLLGYTPDELLNRKWS-ILYTTDADYDYVGDELHRQIRGYGTGTIET 119

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
            +    G    V +  +  PI S +    GF    IV             +  D +++ L
Sbjct: 120 AMQCKNGCIRNVLV--SLYPINSAD-LLLGFT--LIVRDITEWKKSEKQIQESDNRYAAL 174

Query: 208 HEIKKGHSSVEKE---KYDIFSQQSPPPHLRMKNKVSS------LTEYYAHKDDVLKTEK 258
            E      +V        D   +   P   R+ +   +      L   + +    +    
Sbjct: 175 IENIDTGVAVYDAVDDGRDFILKALNPAAERIVHLTGAQVVGKTLLTLFPNMGSTVLPAA 234

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
              +     +      ++  ++ Q  ++ +   + +    +  +        +     E 
Sbjct: 235 LCRVWKTGRTEHLAPFYYQDDIRQGWRENHIYKIPSGEIVAL-FDDVTERKQIEDSLRES 293

Query: 319 ENLTPETVDKCPIPFFVY------SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
           E       +      FV+        G     NPS   +  Y   + +   G     LD 
Sbjct: 294 EERFRVLFENIRDGVFVHPMITPSEPGKFAMVNPSACDILGYTQEELL---GMGPRELDD 350

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
            + S     + +     D         L            +         +         
Sbjct: 351 AESSVTYIPEAMKRLMEDGCV------LFEAVQRDRKGNRIPVEVNANIVELSGRPYIVS 404

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN--REGIILS--TNRAVSKLFGYP 488
              +    + ++ K+      L SI +  ++ + +++  ++G       NR    L G  
Sbjct: 405 SVRDITLRKQHENKLLESTQFLKSIYDGVNNSVFVVDVQQDGSYRYKGINRMHEILTGIK 464

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            E+I  K     ++      +       +        E++     +E    ++ +   + 
Sbjct: 465 NEEITGKSPDEIIDAPFAESVIRRYDACIQSGSTIQYEELLPFKGRETYWETV-LTPVRD 523

Query: 549 PFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEK--ESSHKSDFLARV 592
                     T  DI++ K  + +L       E+       +D++  +
Sbjct: 524 NVGHIYRIIGTSTDITKRKISEQRLRKLSVAVEQSPAVVVITDYMGNI 571



 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 39/385 (10%), Positives = 108/385 (28%), Gaps = 42/385 (10%)

Query: 281 NQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE-TVDKCPIPFFVYSHG 339
              T+ +    ++   ++        N                +    + P    + +  
Sbjct: 4   EVKTRDELITEIEELRRQCSSLEDAINAQRAGWSSCMYRESFVQCVFRELPTGTGLIADS 63

Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399
            +  A+ +   L  Y   + +     +  L       D    +     R   T       
Sbjct: 64  VIKDADSALCSLLGYTPDELLNRKWSI--LYTTDADYDYVGDELHRQIRGYGTGT----I 117

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459
              +Q        +    +   N     +    I  +  + + ++++++    +  +++E
Sbjct: 118 ETAMQCKNGCIRNVLVSLYPI-NSADLLLGFTLIVRDITEWKKSEKQIQESDNRYAALIE 176

Query: 460 ATSDGIAIINR--EGI---ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
               G+A+ +   +G    + + N A  ++       ++ K           +V+   L 
Sbjct: 177 NIDTGVAVYDAVDDGRDFILKALNPAAERIVHLTGAQVVGKTLLTLFPNMGSTVLPAALC 236

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA 574
            +      + L          +      I       S        D++E KQ ++ L  +
Sbjct: 237 RVWKTGRTEHLAPFYYQDDIRQGWRENHIYKIP---SGEIVALFDDVTERKQIEDSLRES 293

Query: 575 KKIAEKESSHKSDFLARVSHEIRTP--------LTA----IIGFSEVIKNQRFGPLGNPR 622
           ++       +  D      H + TP        +      I+G+++    +  G      
Sbjct: 294 EERFRVLFENIRD--GVFVHPMITPSEPGKFAMVNPSACDILGYTQ---EELLGMGPRE- 347

Query: 623 YIEYANYIDRSG----NLVLDIVND 643
                +  + S       +  ++ D
Sbjct: 348 ----LDDAESSVTYIPEAMKRLMED 368



 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 41/315 (13%), Positives = 79/315 (25%), Gaps = 28/315 (8%)

Query: 85  FTWNIDAHGYLKE--ISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL-LKRQN 141
           F  ++   G  +   I+       G    ++ G    ++ D    +      D  ++  +
Sbjct: 438 FVVDVQQDGSYRYKGINRMHEILTGIKNEEITGKSPDEIIDAPFAESVIRRYDACIQSGS 497

Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
           T   +    P +G   Y    L   P+         +R  G               ++L 
Sbjct: 498 TIQYEEL-LPFKGRETYWETVL--TPVRDNVGHI--YRIIGTSTDITKRKISEQRLRKL- 551

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEKY 259
              S   E       +     +I         L      +               +   Y
Sbjct: 552 ---SVAVEQSPAVVVITDYMGNIEYVNPKFTQLTGYTVREAVGNNPNILQSGLTPRETFY 608

Query: 260 PLLTSEESSLPEQEDF--HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
            L  +  S      +F     N + Y +      + N       +++ +   +       
Sbjct: 609 ELWDTILSGGVWHGEFYNRKKNGDIYIESAVISPIFNKEGSITNFVAVKEDITEKKKLWS 668

Query: 318 GENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
                 E  ++             F AN S  + T       +    G S LL  P LS 
Sbjct: 669 ELIAAKEKAEES------DRLKTAFLANISHEIRTP------MNGILGFSELLKEPHLSG 716

Query: 378 NNAIKPVMLYRSDRT 392
               + + L      
Sbjct: 717 EEQTEYINLINQSGQ 731


>gi|254225353|ref|ZP_04918965.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae V51]
 gi|125622194|gb|EAZ50516.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae V51]
          Length = 1331

 Score =  363 bits (931), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 97/384 (25%), Positives = 172/384 (44%), Gaps = 10/384 (2%)

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
              +       R+ +RK+  +      IL+AT + +  ++ +G  L+ N     L G   
Sbjct: 450 AIQLSQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTVNAKFLDLMGLYN 509

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
            +++ K                    +      Q  E   +  T  ++ + +        
Sbjct: 510 NEVIDKEPQEIFPAEVAERFAAAHQVLTQQQSSQNYEVSLVDYTGVQREMLVYEASFSDR 569

Query: 550 FS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
               +     + D++E K+ +++L  AK+ A+  S  K DFLA +SHEIRTP+ AI+G +
Sbjct: 570 ADKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMA 629

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
            +  N            +Y   I+ S   +L I+ND+LD SK+E+GK+N+     +LD+ 
Sbjct: 630 HLALNTPLDTT----QRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDV 685

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI- 725
           +    ++V L A EK I        +IP  ++ D   + Q+ +N+  NA+ FT  G  + 
Sbjct: 686 LDNVTAVVSLKAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVL 745

Query: 726 --IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
              +S  +     +   V+DTG+G+   +L+     F Q  NS   +  GTGLGL ++K 
Sbjct: 746 SARVSQLNEQQVTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQ 805

Query: 784 MVDANMGKFYIFSTPAKGTLIEII 807
           +V+   G+  + S   KG+  E  
Sbjct: 806 LVELMGGQITVHSEEGKGSTFEFS 829



 Score = 44.2 bits (103), Expect = 0.084,   Method: Composition-based stats.
 Identities = 13/143 (9%), Positives = 43/143 (30%), Gaps = 3/143 (2%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + + A G    ++ +    +G Y  ++I     ++      +       +L +Q +   
Sbjct: 485 MYCLSADGKFLTVNAKFLDLMGLYNNEVIDKEPQEIFPAEVAERFAAAHQVLTQQQSSQN 544

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
                 ++ T +   + +       R  + +G    GI+       +     ++  +   
Sbjct: 545 YEVSL-VDYTGVQREMLVYEASFSDRADKVNGI--VGILLDMTERKEMEDELRKAKEAAD 601

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQ 228
            + + K    +    +       
Sbjct: 602 AMSQAKGDFLANMSHEIRTPMNA 624



 Score = 41.9 bits (97), Expect = 0.40,   Method: Composition-based stats.
 Identities = 22/228 (9%), Positives = 56/228 (24%), Gaps = 33/228 (14%)

Query: 286 KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYA 344
                 L + S       +            E   L  E +D  P P   + + G     
Sbjct: 438 HWLSQMLDDLSVAIQLSQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTV 497

Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
           N  FL L    + + I+              ++             +   + +  +  + 
Sbjct: 498 NAKFLDLMGLYNNEVIDKEP------QEIFPAEVAERFAAAHQVLTQQQSSQNYEVSLVD 551

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI------- 457
           +       + +      ++  +     GI  +  + +  + ++        ++       
Sbjct: 552 YTGVQREMLVYEASFS-DRADKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDF 610

Query: 458 LEATS-------DGIAI---------INREGI--ILSTNRAVSKLFGY 487
           L   S       + I           ++      +   N +   L G 
Sbjct: 611 LANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINESAKNLLGI 658


>gi|254508393|ref|ZP_05120514.1| two-component hybrid sensor and regulator [Vibrio parahaemolyticus
            16]
 gi|219548706|gb|EED25710.1| two-component hybrid sensor and regulator [Vibrio parahaemolyticus
            16]
          Length = 1594

 Score =  363 bits (931), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 132/779 (16%), Positives = 271/779 (34%), Gaps = 68/779 (8%)

Query: 91   AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTWYGKTT 148
                +   ++      G    +++G   C        D    + + D +  Q +      
Sbjct: 437  PDLPIIFANKAFEMQTGYSRQEVLGKN-CRFLQNDDRDQKGIDQLRDAIANQTSCSVVIR 495

Query: 149  LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRAL------------ 196
             +  +GT  Y   +L   P+++   E + F   GI           A             
Sbjct: 496  NYRKDGTLFYN--NLKIDPVFNEQGEMTHF--IGIQTDVTEMKRREAENTTKLEQEIARR 551

Query: 197  ---GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL--RMKNKVSSLTEYYAHKD 251
                +  + +   + +     + V  +K  I         +  R ++++           
Sbjct: 552  TEEVRESETRLRTVFDTALDGTVVIDDKGIIIDVNRSTELIFGRDRDELIGENVAILMPA 611

Query: 252  DVLKTEKYP----LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
                         + T ++  + +      ++ +           +    ++  ++    
Sbjct: 612  KFANKHDEYIQTFMRTGDKKLIGQPRQVEGLHKSGRVFPIEVSVGEAKVGDTQVFVGVVK 671

Query: 308  HPSLSAYFDEGENLT-----------PETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYK 355
              ++       E L                 +  +    V   G     N     +  Y 
Sbjct: 672  DITVQEETKARETLLQNELFERELVYRAAFSQAAVGICRVALDGRFIEVNDKMCQIFGYS 731

Query: 356  SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
                + +  G     D     D N  + ++    +    + +     +  + +   A T 
Sbjct: 732  EEALLSMHFG-----DVTHPEDLNESQQMVDDLIEGLQRSFTMDKRYLNKSGDTFWA-TL 785

Query: 416  IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM----QLCSI-LEATSDGI--AII 468
                  N+  +      +  +    +  ++++          L  + L + + GI    +
Sbjct: 786  SVSAVTNEEEQPKYFVAVVEDITKRKNIEKELRSAKTARDGLLRGMRLASDAGGICNWAL 845

Query: 469  NREGIILSTNRAVSKLFGYPVE-DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
            N +   L  + ++  L+G      +  + +   L  +  S       E L        E 
Sbjct: 846  NVDTGALKWDDSMYTLYGVERNKPLHYEDWERSLHPDDFSYATKAFKESLESKEVFNAEF 905

Query: 528  ITLG-STKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
              +   T + + +     +     S          DI++ K  +  L      A++ +  
Sbjct: 906  RIINQKTNQTRWVKAAGDVVFDKESGDKMVFGINLDITDEKDAQAALERETLSAKQANEA 965

Query: 585  KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
            KS FLA +SHEIRTP+  +IG  ++++            +   + I  S   +L+I+ND+
Sbjct: 966  KSRFLATMSHEIRTPMNGVIGMVDLLRETNLSR----DQVNMVSTIRDSSFSLLEIINDI 1021

Query: 645  LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRS 703
            LD SKIESG+M L    V++   V + +  + + A++K + +     +N+P  +L D   
Sbjct: 1022 LDFSKIESGQMELDLTDVNILNLVEKTLDALWVNAHQKDVGLYLEVEDNLPESLLLDPVR 1081

Query: 704  VKQIALNILSNAIHFT---PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760
             +Q+ LN+L NAI FT      G + +   +T   E+ + V D GVGMT  +LE+  KPF
Sbjct: 1082 TRQVLLNLLGNAIKFTASHEQQGYVKVYVGYTE-GELRIAVEDNGVGMTQDQLERLFKPF 1140

Query: 761  GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819
             Q   S   +  GTGLGL ++K+ V+   G+  + S    G+      P+  ++   DC
Sbjct: 1141 TQADTSTTRKFGGTGLGLSISKSFVELMGGEIRVTSKHHHGSRFTFTIPVEVSNS--DC 1197



 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/430 (10%), Positives = 116/430 (26%), Gaps = 40/430 (9%)

Query: 50  EQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNY 109
           E  N T   QE    T  +    T +       +  T  ID  G + +++       G  
Sbjct: 537 EAENTTKLEQEIARRTEEVRESETRLRTVFDTALDGTVVIDDKGIIIDVNRSTELIFGRD 596

Query: 110 AFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQN-TWYGKTTL---WPIEGTNLYVPIDLA 164
             ++IG  +  +      + ++  I   ++  +    G+          G    + + + 
Sbjct: 597 RDELIGENVAILMPAKFANKHDEYIQTFMRTGDKKLIGQPRQVEGLHKSGRVFPIEVSVG 656

Query: 165 ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEK--- 221
              +             G+V    V  + +A    L  +      + +   S        
Sbjct: 657 EAKVGDTQ------VFVGVVKDITVQEETKARETLLQNELFERELVYRAAFSQAAVGICR 710

Query: 222 ----YDIFSQQSPPPHLRMKNKVSSLTEY---YAHKDDVLKTEKY--PLLTSEESSLPEQ 272
                           +   ++ + L+ +     H +D+ ++++    L+   + S    
Sbjct: 711 VALDGRFIEVNDKMCQIFGYSEEALLSMHFGDVTHPEDLNESQQMVDDLIEGLQRSFTMD 770

Query: 273 EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP 332
           + +   + + +        + N  ++   +++     +     ++         D     
Sbjct: 771 KRYLNKSGDTFWATLSVSAVTNEEEQPKYFVAVVEDITKRKNIEKELRSAKTARDGLLRG 830

Query: 333 F-FVYSHGNL-----------FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
                  G +              + S   L   +    +       +L          A
Sbjct: 831 MRLASDAGGICNWALNVDTGALKWDDSMYTLYGVERNKPLHYEDWERSLHPDDFSYATKA 890

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
            K      S  +    +A    I      +  +        ++   +    GI  +  D 
Sbjct: 891 FKE-----SLESKEVFNAEFRIINQKTNQTRWVKAAGDVVFDKESGDKMVFGINLDITDE 945

Query: 441 RINKRKMEIE 450
           +  +  +E E
Sbjct: 946 KDAQAALERE 955


>gi|21229201|ref|NP_635123.1| two component system histidine kinase [Methanosarcina mazei Go1]
 gi|20907770|gb|AAM32795.1| Two component system histidine kinase [Methanosarcina mazei Go1]
          Length = 707

 Score =  363 bits (931), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 99/371 (26%), Positives = 183/371 (49%), Gaps = 8/371 (2%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           R+ ++++     +   IL++  + + + + E  +   N+A  K     +  I  K   + 
Sbjct: 344 RLAEQELRASEYEKKFILDSLEEIVVLRDPEFNVRWANQAALK--NRDLLMIENKEKALD 401

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
           +  N          E+         +        +  LL L+ I  +      Y  T  +
Sbjct: 402 IPVNDRKTP----QELQLPGAPIWTDHEFTSPEGKTWLLRLKPICGETGNIIAYLETGVE 457

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I+E K+ + +L  AK+ AE  +  KS+FLA +SHE+RTPL +IIGFS+++ ++ +G L N
Sbjct: 458 ITERKKYEIELFRAKQDAEVANYAKSEFLANMSHELRTPLNSIIGFSDLLHDKVYGEL-N 516

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
            R ++    I  SG  +L+++N++LD+SK+E+G   LH+    L +  +E   ++  +A 
Sbjct: 517 ARQLKAVGNISGSGKHLLNLINEILDLSKVEAGGFELHYSTFWLADVFAEVRDMLFPFAA 576

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
            K I +      ++P I  D   + Q+  N+++NA+ F+     + +  +  +N  + + 
Sbjct: 577 SKGIKLELEIEKDLPGIYGDRERITQVLSNLMTNAVKFSNENSCVRVKAS-QNNNFIEVS 635

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V D G+G+   + +K  KPF QI +S   + +GTGLGL L K +V  + G  +  S   K
Sbjct: 636 VSDEGIGIAAEDHDKLFKPFSQIDSSSSRKYQGTGLGLALVKEIVQLHGGAVWFKSEVGK 695

Query: 801 GTLIEIIFPLY 811
           G+      PL+
Sbjct: 696 GSTFGFSIPLH 706


>gi|229529572|ref|ZP_04418962.1| hypothetical protein VCG_002667 [Vibrio cholerae 12129(1)]
 gi|229333346|gb|EEN98832.1| hypothetical protein VCG_002667 [Vibrio cholerae 12129(1)]
          Length = 1342

 Score =  363 bits (931), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 97/384 (25%), Positives = 172/384 (44%), Gaps = 10/384 (2%)

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
              +       R+ +RK+  +      IL+AT + +  ++ +G  L+ N     L G   
Sbjct: 461 AIQLSQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTVNAKFLDLMGLYN 520

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
            +++ K                    +      Q  E   +  T  ++ + +        
Sbjct: 521 NEVIDKEPQEIFPAEVAERFAAAHQVLTQQQSSQNYEVSLVDYTGVQREMLVYEASFSDR 580

Query: 550 FS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
               +     + D++E K+ +++L  AK+ A+  S  K DFLA +SHEIRTP+ AI+G +
Sbjct: 581 ADKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMA 640

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
            +  N            +Y   I+ S   +L I+ND+LD SK+E+GK+N+     +LD+ 
Sbjct: 641 HLALNTPLDTT----QRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDV 696

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI- 725
           +    ++V L A EK I        +IP  ++ D   + Q+ +N+  NA+ FT  G  + 
Sbjct: 697 LDNVTAVVSLKAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVL 756

Query: 726 --IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
              +S  +     +   V+DTG+G+   +L+     F Q  NS   +  GTGLGL ++K 
Sbjct: 757 SARVSQLNEQQVTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQ 816

Query: 784 MVDANMGKFYIFSTPAKGTLIEII 807
           +V+   G+  + S   KG+  E  
Sbjct: 817 LVELMGGQITVHSEEGKGSTFEFS 840



 Score = 44.2 bits (103), Expect = 0.087,   Method: Composition-based stats.
 Identities = 13/143 (9%), Positives = 43/143 (30%), Gaps = 3/143 (2%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + + A G    ++ +    +G Y  ++I     ++      +       +L +Q +   
Sbjct: 496 MYCLSADGKFLTVNAKFLDLMGLYNNEVIDKEPQEIFPAEVAERFAAAHQVLTQQQSSQN 555

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
                 ++ T +   + +       R  + +G    GI+       +     ++  +   
Sbjct: 556 YEVSL-VDYTGVQREMLVYEASFSDRADKVNGI--VGILLDMTERKEMEDELRKAKEAAD 612

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQ 228
            + + K    +    +       
Sbjct: 613 AMSQAKGDFLANMSHEIRTPMNA 635



 Score = 41.9 bits (97), Expect = 0.42,   Method: Composition-based stats.
 Identities = 22/228 (9%), Positives = 56/228 (24%), Gaps = 33/228 (14%)

Query: 286 KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYA 344
                 L + S       +            E   L  E +D  P P   + + G     
Sbjct: 449 HWLSQMLDDLSVAIQLSQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTV 508

Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
           N  FL L    + + I+              ++             +   + +  +  + 
Sbjct: 509 NAKFLDLMGLYNNEVIDKEP------QEIFPAEVAERFAAAHQVLTQQQSSQNYEVSLVD 562

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI------- 457
           +       + +      ++  +     GI  +  + +  + ++        ++       
Sbjct: 563 YTGVQREMLVYEASFS-DRADKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDF 621

Query: 458 LEATS-------DGIAI---------INREGI--ILSTNRAVSKLFGY 487
           L   S       + I           ++      +   N +   L G 
Sbjct: 622 LANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINESAKNLLGI 669


>gi|268679547|ref|YP_003303978.1| PAS sensor protein [Sulfurospirillum deleyianum DSM 6946]
 gi|268617578|gb|ACZ11943.1| PAS sensor protein [Sulfurospirillum deleyianum DSM 6946]
          Length = 2035

 Score =  362 bits (930), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 122/602 (20%), Positives = 230/602 (38%), Gaps = 51/602 (8%)

Query: 239  KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN---- 294
             V   T+   H    +K E  PL+     ++          + +    +   T  +    
Sbjct: 951  HVIGKTDMNMHLAFNVKKEWEPLVGILNKAIAAIPPEELQQILKRWGPEDIDTPFDMTLF 1010

Query: 295  NSKESFEYLSHRNH-------PSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPS 347
                SF  L+               A      +   ++ D   I       G + Y + +
Sbjct: 1011 LEVVSFALLALIALFYWNYLLKRQVASKTAELSSLLKSFDAHVIASKTDLKGVITYVSDA 1070

Query: 348  FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
            F  ++ YK  + +    G +  +     +D    + +    +     A   R+       
Sbjct: 1071 FCQISGYKREELM----GKNHRISRHPDNDAKIYEEMWAVITHGG--AWKGRIKNKTKEG 1124

Query: 408  ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT--------------RINKRKMEIEVMQ 453
                 +  +  ++ +   + +    I  +                      + +     +
Sbjct: 1125 G-YYWVDSVIEQELDASGKVVGYAAIRHDVTAHVELEELSEKLESIVEKRTQDLAFLNKE 1183

Query: 454  LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
              +I ++TS GI ++ +E +I+  N+ + ++ GY + + L +   ++        +  Y 
Sbjct: 1184 QQAIFDSTSVGIVLL-KERLIVQCNKRIDEMLGYKIGEQLNQSTDIWY-----REIPDYQ 1237

Query: 514  TEILSLDLRQTLEKITLGSTKEEKLLSLRII---IKKLPFSSCYSLTMHDISEWKQEKNK 570
            +    +   + +        K+  L   R+    I  L       + + DIS  K+    
Sbjct: 1238 SVYEQVWHGEVVRFEHRLMRKDGTLFWARLSGRAIDYLDKEKGVVVVVEDISTEKEALEA 1297

Query: 571  LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
            +  AK +AE+ +  KS FLA +SHEIRTP+ AIIG + +            +   Y   I
Sbjct: 1298 IQRAKSLAEEATQVKSAFLANMSHEIRTPMNAIIGMAHLALQTELSN----QQRNYLVKI 1353

Query: 631  DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
            D +   +L I+ND+LD SKIE+GKM        L++ +     L  + A EK + +    
Sbjct: 1354 DSASKHLLGIINDILDFSKIEAGKMRFESIDFYLEDVMEHLADLSVMKAQEKGLELLFDI 1413

Query: 691  ANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDTG 745
              NIP  +  D   + QI +N+++NAI FT  G +I +     + E     ++  V DTG
Sbjct: 1414 ETNIPTALRGDPLRLGQILINLVNNAIKFTAQG-EIRLFVKLLAQEAKQVHLLFEVHDTG 1472

Query: 746  VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
            +G+   +  K  + F Q   S      G+GLGL + K +V+   GK ++ ST  +G+   
Sbjct: 1473 IGIDEAQQAKLFEAFSQADLSTTREFGGSGLGLAICKHLVEMMQGKIWVKSTLGEGSTFS 1532

Query: 806  II 807
              
Sbjct: 1533 FS 1534



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/155 (11%), Positives = 46/155 (29%), Gaps = 9/155 (5%)

Query: 88   NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGK 146
              D  G +  +S+   +  G    +++G          +       +  ++     W G+
Sbjct: 1057 KTDLKGVITYVSDAFCQISGYKREELMGKNHRISRHPDNDAKIYEEMWAVITHGGAWKGR 1116

Query: 147  TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                  EG   Y  +D         + +  G+         R D       + L +K   
Sbjct: 1117 IKNKTKEGG--YYWVDSVIEQELDASGKVVGYAA------IRHDVTAHVELEELSEKLES 1168

Query: 207  LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS 241
            + E +    +   ++       +    + +K ++ 
Sbjct: 1169 IVEKRTQDLAFLNKEQQAIFDSTSVGIVLLKERLI 1203


>gi|296120946|ref|YP_003628724.1| ammonium transporter [Planctomyces limnophilus DSM 3776]
 gi|296013286|gb|ADG66525.1| ammonium transporter [Planctomyces limnophilus DSM 3776]
          Length = 1322

 Score =  362 bits (930), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 93/424 (21%), Positives = 176/424 (41%), Gaps = 17/424 (4%)

Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
           H  + +    + +             N   + +  E          ++    +  SI E 
Sbjct: 423 HRTRGDFSQHVFVEPHSEVGQIAAEYNRVLDRVTDEIRAREETTHALKSAEEKYRSIFEN 482

Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--NTPSVMNHYLTEILS 518
             +GI   +  GI ++ N A++K++GY   + L        +     P     +   I +
Sbjct: 483 AVEGIFQTSPSGIYMNVNPALAKIYGYDSPNDLIGSIGDISKDLYVDPQRRAEFCRLIET 542

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS----LTMHDISEWKQEKNKLSHA 574
               +           +   + +      +  ++        ++ D++E ++ +   +  
Sbjct: 543 EGAVKGFVSEVYRR--DGSTIWISENAHPVKNAAGRILYYEGSVEDVTEVRRAEQWRAEK 600

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
            +      +  S FLA++SHEIRTPL  +IG  +++K        + R   Y      S 
Sbjct: 601 AEAEAANEAK-SQFLAKMSHEIRTPLNGVIGMLDLLKATSL----DDRQKRYVTICRSSA 655

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
           + +L ++ND+LD+SKIE+G+M L      L + V +   +    A  K + +    A ++
Sbjct: 656 DTLLGLINDILDLSKIEAGRMELALVDFDLHQLVEDISEMFVHRAEGKGVELACHIAPDV 715

Query: 695 PR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEE--VILRVRDTGVGMTN 750
           P+ I  D   ++QI +N++ NA+ FT  G   I +S   +   E  + + V+DTG+G++ 
Sbjct: 716 PQRIEGDPERLRQILVNLVGNALKFTSVGYVLIKVSMAQSPTGEHRLQIHVKDTGIGISP 775

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            + +K  +PF Q   +   R  GTGLGL + + + D   G   I S    GT   +  PL
Sbjct: 776 AQQQKLFQPFTQADVTTSRRFGGTGLGLSICRQLADLMQGSIQIESAVGVGTTFTVDLPL 835

Query: 811 YDTS 814
               
Sbjct: 836 TSAE 839



 Score = 54.6 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 25/252 (9%), Positives = 66/252 (26%), Gaps = 13/252 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNTW 143
            +     G    ++  L K  G  +   +   + D+S  L++DP        L++ +   
Sbjct: 487 IFQTSPSGIYMNVNPALAKIYGYDSPNDLIGSIGDISKDLYVDPQRRAEFCRLIETEGAV 546

Query: 144 YG-KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
            G  + ++  +G+   + I   A P+ +       + G   V             +    
Sbjct: 547 KGFVSEVYRRDGST--IWISENAHPVKNAAGRILYYEG--SVEDVTEVRRAEQW-RAEKA 601

Query: 203 KFSHLHEIKKGHSSVEKEKYD-----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257
           +    +E K    +    +       +           + ++            D L   
Sbjct: 602 EAEAANEAKSQFLAKMSHEIRTPLNGVIGMLDLLKATSLDDRQKRYVTICRSSADTLLGL 661

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
              +L   +      E            +       + ++     L+    P +    + 
Sbjct: 662 INDILDLSKIEAGRMELALVDFDLHQLVEDISEMFVHRAEGKGVELACHIAPDVPQRIEG 721

Query: 318 GENLTPETVDKC 329
                 + +   
Sbjct: 722 DPERLRQILVNL 733


>gi|126172786|ref|YP_001048935.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS155]
 gi|125995991|gb|ABN60066.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS155]
          Length = 1238

 Score =  362 bits (930), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 124/594 (20%), Positives = 207/594 (34%), Gaps = 46/594 (7%)

Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291
           P  R+ + +   ++      + +     P          E + +           +    
Sbjct: 381 PASRLLSHLEGCSQEPRKPPEKITRGWEPWFLLVSRIFEENKQYTH------HLAEQNKR 434

Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLL 350
           L        E L          Y      L    +D  P    F    GN    N +   
Sbjct: 435 LDKLVARRTERLKDTTERREREYA-----LLRSLLDSIPEAIVFKDKEGNYLGCNKAAER 489

Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
           +  Y   + I ++     L          A    +L             L          
Sbjct: 490 MLGYTESEMIGLSS--EDLTSPEMGIRIRAEDEQVLKDRTPLRYQEKVELA------GKP 541

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA--II 468
           + +  +     N+  E      +  +      +  ++ +   +    ++A  DG+    +
Sbjct: 542 VLLDTLKLPFYNRRGELQGLIAVWRDVTREYESAEQLRLSEERYHLAMDAVEDGLWDWYL 601

Query: 469 NREGIILSTNRAVSKLFGYPVED--ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
           + E II   N A   + GY   +   L          +    +  Y  + L+  +    E
Sbjct: 602 DSEQII--CNPAYYSMLGYKTNEFPALVSTIDELSHPDDRIRVEGYRAQYLADPV-GAYE 658

Query: 527 KITLGSTKEEKLLSL--RIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKE 581
                  K      +  R  + +            T  DI+  K  +  L  AK+ AE  
Sbjct: 659 IEFRMLGKNGGYHWVLSRGRVVEFTAEGQPKRMLGTHKDITRHKSNEVALLEAKQDAELA 718

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
           + +KS+FLA +SHEIRTP+ AIIG  ++ +          +  +Y      S   +L I+
Sbjct: 719 NLYKSEFLANMSHEIRTPMNAIIGMLQLAQRTSLTA----QQKDYLEKAGFSAQSLLRII 774

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-AD 700
           ND+LD SKIE+GK+ L   P  LD+ +  A+ L  L A E+ + +          IL  D
Sbjct: 775 NDILDFSKIEAGKLELERVPFPLDKVLDHALDLNALKAQEQGVELLLYAPVTAGLILKGD 834

Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE------VILRVRDTGVGMTNYELE 754
              + Q+ +N+LSNA+ FT SG    I        E      +   VRDTG+G+   + +
Sbjct: 835 PLRLGQVLINLLSNAVKFTQSG---EIELGCEDVGERDHRITLKFWVRDTGIGIGKDQQD 891

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           K    F Q   S   +  GTGLGL ++K +V    GK  + S    G+      
Sbjct: 892 KLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGKMQVQSELGVGSTFSFTI 945



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 48/347 (13%), Positives = 99/347 (28%), Gaps = 30/347 (8%)

Query: 9   NPEDILTSNCKGNTQDLSK--KKIDNGFE-----TEKSKKENPCHDSFEQSNFTDQNQES 61
           +P   L S+ +G +Q+  K  +KI  G+E       +  +EN  +           ++  
Sbjct: 380 SPASRLLSHLEGCSQEPRKPPEKITRGWEPWFLLVSRIFEENKQYTHHLAEQNKRLDKLV 439

Query: 62  VSNTNYLDSENTFVFDP--------IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM 113
              T  L                          +  D  G     ++   + +G    +M
Sbjct: 440 ARRTERLKDTTERREREYALLRSLLDSIPEAIVFK-DKEGNYLGCNKAAERMLGYTESEM 498

Query: 114 IGMRLCDVSDIL-HIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172
           IG+   D++     I        +LK +     +     +E     V +D   LP Y+R 
Sbjct: 499 IGLSSEDLTSPEMGIRIRAEDEQVLKDRTPLRYQE---KVELAGKPVLLDTLKLPFYNRR 555

Query: 173 REFSGFRGFGIVHVN-RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231
            E  G     +     R       L    ++    +  ++ G      +   I    +  
Sbjct: 556 GELQGL--IAVWRDVTREYESAEQLRLSEERYHLAMDAVEDGLWDWYLDSEQIICNPAYY 613

Query: 232 PHLRMK----NKVSSLTEYYAHKDDVLKTEKYPL--LTSEESSLPEQEDFHTINLNQYTK 285
             L  K      + S  +  +H DD ++ E Y    L     +   +      N   +  
Sbjct: 614 SMLGYKTNEFPALVSTIDELSHPDDRIRVEGYRAQYLADPVGAYEIEFRMLGKNGGYHWV 673

Query: 286 KQYFGTLQ-NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI 331
                 ++     +    L      +     +       +  +   +
Sbjct: 674 LSRGRVVEFTAEGQPKRMLGTHKDITRHKSNEVALLEAKQDAELANL 720


>gi|182414033|ref|YP_001819099.1| PAS/PAC sensor hybrid histidine kinase [Opitutus terrae PB90-1]
 gi|177841247|gb|ACB75499.1| PAS/PAC sensor hybrid histidine kinase [Opitutus terrae PB90-1]
          Length = 812

 Score =  362 bits (930), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 104/515 (20%), Positives = 192/515 (37%), Gaps = 22/515 (4%)

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIE 361
                 P  +      E      ++  P+  +     G L YAN  +           + 
Sbjct: 3   DDPAGTPLPTGSATASEQFLQSLLEHLPVFIYRKDREGRLTYANQRYCERRGQPLAALLG 62

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                          +             +T          +  + E S  +  I     
Sbjct: 63  QTD------FDLSPPELAQTHAADNLIVMQTRRPLEKDELQVLPSGEKS-WIHIIKVPII 115

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
           +   E +   G+  +  D +  +  +  E   L  +LE   D +   +R       + ++
Sbjct: 116 DADGEVVGTQGMYWDITDRKAVEEALAHERDLLSGLLEHIDDHVYFKDRASRFRRISTSL 175

Query: 482 SKLFGY-PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
           ++ FG      ++ K    F  +            I+        +      +   +   
Sbjct: 176 ARKFGLRDPAAVVGKTDFDFFTREHAEPAFADEQAIIRTGEPIVGKIERESWSGNTETWG 235

Query: 541 LRIII---KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
           L   +    +            D++  K+ + +L  AK  AE  +  KS+FLA +SHEIR
Sbjct: 236 LTTKVPLRNRAGEIIGTCGITKDVTALKRTEQQLQAAKLAAEAAARAKSEFLANMSHEIR 295

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TP+  +IG + ++ + +     +P   ++A  +  S   ++ ++ND+LD SKIE+GK+  
Sbjct: 296 TPMNGVIGMTGLLLDTKL----DPEQRQFAESVRNSAENLMTVINDILDFSKIEAGKLLF 351

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAI 716
                 L E +   + ++   A  K I +    A  +PR +  D   ++QI  N+L NAI
Sbjct: 352 EELDFDLVETIEGTLDMLAERAQGKGIELIDGIAPQVPRYLRGDPGRLRQILTNLLGNAI 411

Query: 717 HFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
            FT  G ++++STT          V   V DTG+G++     +  + F Q  +S   R  
Sbjct: 412 KFTEHG-EVVLSTTLERETATHAIVRFDVTDTGIGISRDVQARLFQSFEQADSSTTRRYG 470

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           GTGLGL ++K +V    G+  + S    G+     
Sbjct: 471 GTGLGLAISKQLVAMMHGEIGVQSEAGVGSTFWFT 505



 Score = 84.7 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 31/272 (11%), Positives = 71/272 (26%), Gaps = 11/272 (4%)

Query: 56  DQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIG 115
           D    +   T    +   F+   +     F +  D  G L   ++   +  G     ++G
Sbjct: 3   DDPAGTPLPTGSATASEQFLQSLLEHLPVFIYRKDREGRLTYANQRYCERRGQPLAALLG 62

Query: 116 MRLCDVSDILHIDPNNHIGD-LLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNRE 174
               D+S       +      +++ +             G      I +  +PI   + E
Sbjct: 63  QTDFDLSPPELAQTHAADNLIVMQTRRPLEKDELQVLPSGE--KSWIHIIKVPIIDADGE 120

Query: 175 FSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP--- 231
             G +G  +                     S L E    H   +          +     
Sbjct: 121 VVGTQG--MYWDITDRKAVEEALAHERDLLSGLLEHIDDHVYFKDRASRFRRISTSLARK 178

Query: 232 PHLRMKNKVSSLTEYYAHKDDVLK---TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288
             LR    V   T++     +  +    ++  ++ + E  + + E        +      
Sbjct: 179 FGLRDPAAVVGKTDFDFFTREHAEPAFADEQAIIRTGEPIVGKIERESWSGNTETWGLTT 238

Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
              L+N + E           +     ++   
Sbjct: 239 KVPLRNRAGEIIGTCGITKDVTALKRTEQQLQ 270


>gi|163750485|ref|ZP_02157724.1| sensory box histidine kinase/response regulator [Shewanella
           benthica KT99]
 gi|161329806|gb|EDQ00794.1| sensory box histidine kinase/response regulator [Shewanella
           benthica KT99]
          Length = 1235

 Score =  362 bits (930), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 117/571 (20%), Positives = 207/571 (36%), Gaps = 37/571 (6%)

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP--SLSAY 314
            + P    E  S   +  F  ++      +QY   L   ++   + ++ R       +  
Sbjct: 393 SQEPRKPPELISQSWEPWFQLVSRIFEENQQYTRHLAEQNRRLDKLVARRTERLKETTER 452

Query: 315 FDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
            +    L    +D  P    F    G     N +   +  Y   + I        L    
Sbjct: 453 REREYALLRSLLDAIPEAIVFKDKEGKYLGCNKAAERMLGYTESELIGQESI--KLTSKE 510

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
           +     A    +L             L         ++ +  +     N+  E +    +
Sbjct: 511 QSVRIKAEDERVLAERTPLRYQEKVELA------GKTVLLDTLKLPFYNRRGELLGLIAV 564

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIA--IINREGIILSTNRAVSKLFGYPVED 491
             +      +  ++ +   +    ++A  DG+    ++ + II   N A   + GY   +
Sbjct: 565 WRDVTREYESAEQLRLSEERYHLAMDAVEDGLWDWYLDSKQII--CNPAYYSMLGYKSNE 622

Query: 492 --ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR-----II 544
              L       +  +    +  Y  + L   +    +       K  +   L      + 
Sbjct: 623 FPALVSTIDELIHPDDRIRVQEYREQYLDDPV-GAFDIEFRMRGKSGQYHWLLSRGRVVE 681

Query: 545 IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
                       T  DI+  K  +  L  AK+ AE  + +KS+FLA +SHEIRTP+ AII
Sbjct: 682 FTADNQPKRMVGTHKDITRHKSNEVALLEAKQDAESANVYKSEFLANMSHEIRTPMNAII 741

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           G  ++ +     P    +  +Y      S   +L I+ND+LD SKIE+GK+ L      L
Sbjct: 742 GMLQLAERTELTP----KQRDYLEKAGFSAQSLLRIINDILDFSKIEAGKLELERVAFPL 797

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG 723
           D+ +  A+ L  L + +K + +          IL  D   + Q+ +N+LSNA+ FT +G 
Sbjct: 798 DKVLDHALDLNALKSQQKGVELLLYAPVTAGLILEGDPLRLGQVLINMLSNAVKFTQTG- 856

Query: 724 QIIISTTHTSNEE------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
              I        E      +   VRDTG+G++  +       F Q   S   +  GTGLG
Sbjct: 857 --EIELGCEDVGERDHRITLKFWVRDTGIGISKEQQASLFDAFAQADGSTTRKYGGTGLG 914

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           L ++K +V    G+  + S    G+      
Sbjct: 915 LSISKHLVSMMGGQMQVQSEMGVGSTFSFTI 945



 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/262 (10%), Positives = 71/262 (27%), Gaps = 15/262 (5%)

Query: 79  IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL-HIDPNNHIGDLL 137
                   +  D  G     ++   + +G    ++IG     ++     +        +L
Sbjct: 465 DAIPEAIVFK-DKEGKYLGCNKAAERMLGYTESELIGQESIKLTSKEQSVRIKAEDERVL 523

Query: 138 KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN-RVDNDPRAL 196
             +     +     +E     V +D   LP Y+R  E  G     +     R       L
Sbjct: 524 AERTPLRYQE---KVELAGKTVLLDTLKLPFYNRRGELLGL--IAVWRDVTREYESAEQL 578

Query: 197 GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK----VSSLTEYYAHKDD 252
               ++    +  ++ G      +   I    +    L  K+     + S  +   H DD
Sbjct: 579 RLSEERYHLAMDAVEDGLWDWYLDSKQIICNPAYYSMLGYKSNEFPALVSTIDELIHPDD 638

Query: 253 VLKTEKYPL--LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ-NNSKESFEYLSHRNHP 309
            ++ ++Y    L     +   +      +   +        ++     +    +      
Sbjct: 639 RIRVQEYREQYLDDPVGAFDIEFRMRGKSGQYHWLLSRGRVVEFTADNQPKRMVGTHKDI 698

Query: 310 SLSAYFDEGENLTPETVDKCPI 331
           +     +       +  +   +
Sbjct: 699 TRHKSNEVALLEAKQDAESANV 720


>gi|313672986|ref|YP_004051097.1| multi-sensor hybrid histidine kinase [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312939742|gb|ADR18934.1| multi-sensor hybrid histidine kinase [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 1095

 Score =  362 bits (930), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 105/416 (25%), Positives = 192/416 (46%), Gaps = 13/416 (3%)

Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
           H +         +        ++  + +   G   +  +  + +R ++ + +   SI E 
Sbjct: 216 HRLLMPDGRIKYVIERGKTFYDKDGDPIRSIGTVQDITEKVLLERSVKEQEIVFKSIFER 275

Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520
              GI   +  G I+  N  +++L  Y  ED   K  +             ++  +L+ +
Sbjct: 276 APVGIIFTDILGNIILVNNYLAELLDYEHEDFKNKNISEITFAEDYKKEQIFIQGLLNNE 335

Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKK 576
           +            ++  L  +      L         +   + +I++ K  + +L  AK+
Sbjct: 336 ID-YYRIEKRYIKRDGSLNWVDSSRTSLKDEDGNIKNFISVVLNINDKKVAEQELIKAKE 394

Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
            AE+ +  KS FLA +SHEIRTPL  IIG ++++KN+          +EY  +++ + + 
Sbjct: 395 NAERANQAKSTFLANMSHEIRTPLNGIIGIAQLLKNENL----PKHVVEYVKHLNMASHH 450

Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP- 695
           +LD++ND+ D S+IESG+M +  +  SL + ++E + ++   A EK I +       IP 
Sbjct: 451 LLDLINDIFDFSRIESGEMKIINDIFSLKDTINEVVKVLYYRAKEKNIELTVFVDPLIPS 510

Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQ---IIISTTHTSNEEVILRVRDTGVGMTNYE 752
           +I+ D   VKQI  N+L NAI FT  G     + I  +   + +++  ++DTG+G++  +
Sbjct: 511 KIIGDSLRVKQILTNLLGNAIKFTEVGYVSLDVFIKNSTEKSVDILFVIKDTGIGISGDK 570

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            +K   PF Q   S   +  GTGLGL + K ++DA  G     S P KGT   +  
Sbjct: 571 KQKLFTPFFQGDQSVTKKYGGTGLGLTIVKRLIDAMNGDINFISEPGKGTTFYVTL 626



 Score = 51.2 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/140 (14%), Positives = 44/140 (31%), Gaps = 7/140 (5%)

Query: 450 EVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVE--DILRKPFTVFLEQNTP 506
            + ++ + LE+   GI   +   G +L  +    K+ GY     ++  + +   L     
Sbjct: 8   SIDEIWAALESGDIGIWFWDNSTGKVL-WSDHAYKMLGYYPNEFEMSYEKWVELLHPEDV 66

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS---LTMHDISE 563
                 + + L      +++          K +     + +            T  DI+E
Sbjct: 67  EYAQLSVAKQLEFKNSFSVDFRLRAKDGSYKWIRGSGKVIRYADDGSMLYLTGTHTDITE 126

Query: 564 WKQEKNKLSHAKKIAEKESS 583
            K  +  L     I E+   
Sbjct: 127 KKNAEILLQEKLYILEEAEK 146



 Score = 43.5 bits (101), Expect = 0.17,   Method: Composition-based stats.
 Identities = 12/149 (8%), Positives = 39/149 (26%), Gaps = 7/149 (4%)

Query: 79  IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLL 137
               V   +  D  G +  ++  L + +           + +++           I  LL
Sbjct: 274 ERAPVGIIF-TDILGNIILVNNYLAELLDYEHEDFKNKNISEITFAEDYKKEQIFIQGLL 332

Query: 138 KRQ-NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRAL 196
             + + +  +      +G+     +D +   +   +     F    +V            
Sbjct: 333 NNEIDYYRIEKRYIKRDGSLN--WVDSSRTSLKDEDGNIKNF--ISVVLNINDKKVAEQE 388

Query: 197 GKRLDKKFSHLHEIKKGHSSVEKEKYDIF 225
             +  +     ++ K    +    +    
Sbjct: 389 LIKAKENAERANQAKSTFLANMSHEIRTP 417


>gi|147674561|ref|YP_001216911.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae O395]
 gi|262169340|ref|ZP_06037032.1| hypothetical protein VIJ_002565 [Vibrio cholerae RC27]
 gi|146316444|gb|ABQ20983.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae O395]
 gi|227013266|gb|ACP09476.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae O395]
 gi|262022153|gb|EEY40862.1| hypothetical protein VIJ_002565 [Vibrio cholerae RC27]
          Length = 1331

 Score =  362 bits (930), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 97/384 (25%), Positives = 172/384 (44%), Gaps = 10/384 (2%)

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
              +       R+ +RK+  +      IL+AT + +  ++ +G  L+ N     L G   
Sbjct: 450 AIQLSQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTVNAKFLDLMGLYN 509

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
            +++ K                    +      Q  E   +  T  ++ + +        
Sbjct: 510 NEVIDKEPQEIFPAEVAERFAAAHQVLTQQQSSQNYEVSLVDYTGVQREMLVYEASFSDR 569

Query: 550 FS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
               +     + D++E K+ +++L  AK+ A+  S  K DFLA +SHEIRTP+ AI+G +
Sbjct: 570 ADKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMA 629

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
            +  N            +Y   I+ S   +L I+ND+LD SK+E+GK+N+     +LD+ 
Sbjct: 630 HLALNTPLDTT----QRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDV 685

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI- 725
           +    ++V L A EK I        +IP  ++ D   + Q+ +N+  NA+ FT  G  + 
Sbjct: 686 LDNVTAVVSLKAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVL 745

Query: 726 --IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
              +S  +     +   V+DTG+G+   +L+     F Q  NS   +  GTGLGL ++K 
Sbjct: 746 SARVSQLNEQQVTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQ 805

Query: 784 MVDANMGKFYIFSTPAKGTLIEII 807
           +V+   G+  + S   KG+  E  
Sbjct: 806 LVELMGGQITVHSEEGKGSTFEFS 829



 Score = 44.2 bits (103), Expect = 0.089,   Method: Composition-based stats.
 Identities = 13/143 (9%), Positives = 43/143 (30%), Gaps = 3/143 (2%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + + A G    ++ +    +G Y  ++I     ++      +       +L +Q +   
Sbjct: 485 MYCLSADGKFLTVNAKFLDLMGLYNNEVIDKEPQEIFPAEVAERFAAAHQVLTQQQSSQN 544

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
                 ++ T +   + +       R  + +G    GI+       +     ++  +   
Sbjct: 545 YEVSL-VDYTGVQREMLVYEASFSDRADKVNGI--VGILLDMTERKEMEDELRKAKEAAD 601

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQ 228
            + + K    +    +       
Sbjct: 602 AMSQAKGDFLANMSHEIRTPMNA 624



 Score = 41.9 bits (97), Expect = 0.45,   Method: Composition-based stats.
 Identities = 22/228 (9%), Positives = 56/228 (24%), Gaps = 33/228 (14%)

Query: 286 KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYA 344
                 L + S       +            E   L  E +D  P P   + + G     
Sbjct: 438 HWLSQMLDDLSVAIQLSQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTV 497

Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
           N  FL L    + + I+              ++             +   + +  +  + 
Sbjct: 498 NAKFLDLMGLYNNEVIDKEP------QEIFPAEVAERFAAAHQVLTQQQSSQNYEVSLVD 551

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI------- 457
           +       + +      ++  +     GI  +  + +  + ++        ++       
Sbjct: 552 YTGVQREMLVYEASFS-DRADKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDF 610

Query: 458 LEATS-------DGIAI---------INREGI--ILSTNRAVSKLFGY 487
           L   S       + I           ++      +   N +   L G 
Sbjct: 611 LANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINESAKNLLGI 658


>gi|325982034|ref|YP_004294436.1| multi-sensor hybrid histidine kinase [Nitrosomonas sp. AL212]
 gi|325531553|gb|ADZ26274.1| multi-sensor hybrid histidine kinase [Nitrosomonas sp. AL212]
          Length = 1236

 Score =  362 bits (930), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 114/477 (23%), Positives = 200/477 (41%), Gaps = 35/477 (7%)

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
           +  +  A   +  +  P    N++   +       +      R     W+    LA TF 
Sbjct: 328 LAALFGAFLFNRRVVDPLKHLNHSALEI-------SAGNLHLRAAIEGWDEMRQLAQTFN 380

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476
              +         +N +     D +     + I+  ++ S++E   D +   +  G ILS
Sbjct: 381 LMVERLNASNLELENRVAARTADLQRANSALAIKEEEMRSVVEHMVDCVVTTDEIGKILS 440

Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL----------- 525
            N  + KLFGY  ++++ +  ++ + +   S    Y+         Q             
Sbjct: 441 VNPVMEKLFGYSHDEMIGQNVSIIVPEPDRSKHISYMENYCRTGHGQEYVGRPYLSGSHG 500

Query: 526 ---EKITLGSTKEEKLLSLRIIIKK--LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
               +   G  K  + + + + + +  +     ++  M DI E  +  N L  A+  AE+
Sbjct: 501 IGRGREVEGIRKNGERIEIYLAVSEYYVGEERHFTGVMRDIREHVRIMNDLQQARIEAEQ 560

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            +  KS FLA +SHEIRTP+  +IG  +V++            +E AN I  S   +L I
Sbjct: 561 ANKAKSAFLAAMSHEIRTPMNGVIGMIDVLRQTSLTGY----QMEMANLIRDSAYSLLSI 616

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILA 699
           + D+LD SKIE+GK+ +   P+SL   V  A  ++   A  K++ +       IP  +L 
Sbjct: 617 IEDILDFSKIEAGKLEIEKIPMSLANIVENACGMLAHVALSKKVELTLFIDPEIPENMLG 676

Query: 700 DLRSVKQIALNILSNAIHFT---PSGGQIIISTTHTSNE----EVILRVRDTGVGMTNYE 752
           D   ++QI +NI++NAI F+      G++ +    T +      V  ++ D G+GM    
Sbjct: 677 DPLRLRQILVNIINNAIKFSSKQEKQGKVSVRVLLTESNPDQVVVTFQITDNGIGMNKET 736

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            EK  K F Q   S   R  GTGLGL ++  + +    +  + S P  G+   I  P
Sbjct: 737 QEKLFKSFSQGDPSTTRRFGGTGLGLAISHHLAELMDAEITVQSAPQHGSTFIIQMP 793


>gi|58582420|ref|YP_201436.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|58427014|gb|AAW76051.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 1402

 Score =  362 bits (930), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 125/707 (17%), Positives = 243/707 (34%), Gaps = 65/707 (9%)

Query: 164 AALPIYSRNREFSGFR-----GF----GIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214
           +  PI +      G+R     GF     I         P+               + +  
Sbjct: 223 SGEPIMTSPISLFGYRVPRESGFWLLLAIYREGMPLQTPQQRMVATSGWVYAPFSLAQIV 282

Query: 215 SSVEKEKYDI-FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE 273
            S   E+ DI               +  +     A    V+        T   ++ P   
Sbjct: 283 QSALGERDDIALDISDRNEPTHNLYRSGTPAIDSALGPPVVTLLPMYGRTWVITAHPTAS 342

Query: 274 DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF 333
              ++N N            +    +   L   N         +   L            
Sbjct: 343 FIASLNQNSPWLIGGLVMAGSVLFAALLVLYFSNGLRREEVLRKQMELAALVSHSSEAIV 402

Query: 334 FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393
                G +   NP+   +  Y + + I+    L+ LL     +                 
Sbjct: 403 AETPDGRITLWNPAAEAMFGYTAEEAIDQ--DLTMLLAPQAYAMPEIDHADA------AL 454

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK------- 446
            A ++   T+     + + +                 +    +  D   + ++       
Sbjct: 455 AANASAAQTMHHRDGHQVHVLASKSPIIESEGTLSGHSHFFRDISDRVRSHQRSIDLNAS 514

Query: 447 MEIEVMQ-----------LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
           +E +V +             +IL      I   +  G +   N A  K+ GY   +++ +
Sbjct: 515 LEHQVAERTGELVKFSVLQRAILAHAGYAIIATDSSGFVTLFNPAAEKMLGYNAAEVIGR 574

Query: 496 PFTVFLEQNTPSVMNH-YLTEILSLDLRQTLEK-------------ITLGSTKEEKLLSL 541
                  +          L +     +  TLE                   + + + L +
Sbjct: 575 RKASQFIEQDELQERARMLADQTGTPVAHTLEAIAALTSLGRSDTSEWTYVSHDGRRLPV 634

Query: 542 RIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
            + +  L         Y     D++E K  + +L  A   A+  +  KSDFLA +SHEIR
Sbjct: 635 LLTLSTLRDDHDQVIGYLGVAVDLTEQKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIR 694

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TP+ AI+G   +++             +    IDRS   +L+I+ND+LD SKIE+G+++L
Sbjct: 695 TPMNAILGMLYLLQRSELPGAA----QDMVAKIDRSARTLLEIINDILDFSKIEAGRIDL 750

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTS-FANNIPRILADLRSVKQIALNILSNAI 716
              P  L++       L++   + K + +       +   +L D   + Q+ +N++ NAI
Sbjct: 751 ECAPFDLNQLFDNIAELMRSSLSAKPVEMIVEPLPRDSRWLLGDALRINQVLVNLVGNAI 810

Query: 717 HFTPSGGQIIISTTHTSNEE-----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
            FT  G ++++S     + +     ++  VRDTG+G++  +      PF Q   S   R 
Sbjct: 811 KFTEQG-EVVLSVRRFPSGDPNKFKLLFSVRDTGIGISKEKQSLIFSPFLQADTSTSRRY 869

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
            G+GLGL +++ +++   G+  + S P +G+    +  L  ++ P +
Sbjct: 870 GGSGLGLTISRRLIELMGGELEVESVPGRGSEFYFVITLEKSAPPQE 916



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 48/443 (10%), Positives = 117/443 (26%), Gaps = 47/443 (10%)

Query: 164 AALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYD 223
           +        REF G  G+G +H  RV         +  +        ++  +  + E+Y 
Sbjct: 132 SYSRSRDYPREFPGVLGYGYIH--RVAPADEDAFLQNARADGAPDIQRRPLAPWDGERYI 189

Query: 224 IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY 283
           +   +             +   +             P++TS  S    +    +      
Sbjct: 190 VLYFEPESSGNHPLGIDIASDPHRRAAALQAARSGEPIMTSPISLFGYRVPRESGFWLLL 249

Query: 284 TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY 343
              +    LQ   +           P   A   +                 +        
Sbjct: 250 AIYREGMPLQTPQQRMVATSGWVYAPFSLAQIVQSALGER-------DDIALDISDR--- 299

Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403
            N     L +            + + L  P ++         +  +  T    ++     
Sbjct: 300 -NEPTHNLYR-------SGTPAIDSALGPPVVTLLPMYGRTWVITAHPTASFIASLNQNS 351

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
            W                     ++    +        + + ++  + M+L +++  +S+
Sbjct: 352 PW------------LIGGLVMAGSVLFAALLVLYFSNGLRREEVLRKQMELAALVSHSSE 399

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
            I     +G I   N A   +FGY  E+ + +  T+ L     +     +    +     
Sbjct: 400 AIVAETPDGRITLWNPAAEAMFGYTAEEAIDQDLTMLLAP--QAYAMPEIDHADAALAAN 457

Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAE 579
                T+   ++   + +      +  S            DIS+  +   +        E
Sbjct: 458 ASAAQTMH-HRDGHQVHVLASKSPIIESEGTLSGHSHFFRDISDRVRSHQRSIDLNASLE 516

Query: 580 KESSHKSDFL--------ARVSH 594
            + + ++  L        A ++H
Sbjct: 517 HQVAERTGELVKFSVLQRAILAH 539



 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/283 (8%), Positives = 65/283 (22%), Gaps = 23/283 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMR-LCDVSDILHIDPNNH---------IGDLLK 138
            D+ G++   +    K +G  A ++IG R      +   +              +   L+
Sbjct: 547 TDSSGFVTLFNPAAEKMLGYNAAEVIGRRKASQFIEQDELQERARMLADQTGTPVAHTLE 606

Query: 139 RQNTW----YGKTTLW-PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193
                       T+ W  +      +P+ L    +   + +  G+ G  +          
Sbjct: 607 AIAALTSLGRSDTSEWTYVSHDGRRLPVLLTLSTLRDDHDQVIGYLGVAV--DLTEQKLH 664

Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253
               +         ++ K    +    +              ++                
Sbjct: 665 EKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSELPGAAQDMVAKID 724

Query: 254 LKTEKYPLLTSEESSLPEQEDFH------TINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
                   + ++     + E           +LNQ           + S +  E +    
Sbjct: 725 RSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQLFDNIAELMRSSLSAKPVEMIVEPL 784

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLL 350
                    +   +    V+           G +  +   F  
Sbjct: 785 PRDSRWLLGDALRINQVLVNLVGNAIKFTEQGEVVLSVRRFPS 827



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 32/376 (8%), Positives = 79/376 (21%), Gaps = 14/376 (3%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI-LHIDPNNHIGDLLKRQNTWYGKTTL 149
             G +   +       G  A + I   L  +     +  P     D     N    +T  
Sbjct: 406 PDGRITLWNPAAEAMFGYTAEEAIDQDLTMLLAPQAYAMPEIDHADAALAANASAAQTMH 465

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
              +G  ++  +  +  PI       SG   F                  L+    H   
Sbjct: 466 -HRDGHQVH--VLASKSPIIESEGTLSGHSHF--FRDISDRVRSHQRSIDLNASLEHQVA 520

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
            + G               +    +   +        +    + +       +     + 
Sbjct: 521 ERTGELVKFSVLQRAILAHAGYAIIATDSS--GFVTLFNPAAEKMLGYNAAEVIGRRKAS 578

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
              E        +    Q    + +  +      S     +    +   +      +   
Sbjct: 579 QFIEQDELQERARMLADQTGTPVAHTLEAIAALTSLGRSDTSEWTYVSHDGRRLPVLLTL 638

Query: 330 PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389
                   H  +       + LT+ K  +        +        SD  A     +   
Sbjct: 639 ST--LRDDHDQVIGYLGVAVDLTEQKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIRTP 696

Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449
               +     L   +        +  I           +       +       +  +E 
Sbjct: 697 MNAILGMLYLLQRSELPGAAQDMVAKID----RSARTLLEIINDILDFSKIEAGRIDLEC 752

Query: 450 EVMQLCSILEATSDGI 465
               L  + +  ++ +
Sbjct: 753 APFDLNQLFDNIAELM 768


>gi|121728768|ref|ZP_01681782.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae V52]
 gi|121628945|gb|EAX61398.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae V52]
          Length = 1113

 Score =  362 bits (930), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 97/384 (25%), Positives = 172/384 (44%), Gaps = 10/384 (2%)

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
              +       R+ +RK+  +      IL+AT + +  ++ +G  L+ N     L G   
Sbjct: 232 AIQLSQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTVNAKFLDLMGLYN 291

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
            +++ K                    +      Q  E   +  T  ++ + +        
Sbjct: 292 NEVIDKEPQEIFPAEVAERFAAAHQVLTQQQSSQNYEVSLVDYTGVQREMLVYEASFSDR 351

Query: 550 FS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
               +     + D++E K+ +++L  AK+ A+  S  K DFLA +SHEIRTP+ AI+G +
Sbjct: 352 ADKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMA 411

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
            +  N            +Y   I+ S   +L I+ND+LD SK+E+GK+N+     +LD+ 
Sbjct: 412 HLALNTPLDTT----QRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDV 467

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI- 725
           +    ++V L A EK I        +IP  ++ D   + Q+ +N+  NA+ FT  G  + 
Sbjct: 468 LDNVTAVVSLKAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVL 527

Query: 726 --IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
              +S  +     +   V+DTG+G+   +L+     F Q  NS   +  GTGLGL ++K 
Sbjct: 528 SARVSQLNEQQVTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQ 587

Query: 784 MVDANMGKFYIFSTPAKGTLIEII 807
           +V+   G+  + S   KG+  E  
Sbjct: 588 LVELMGGQITVHSEEGKGSTFEFS 611



 Score = 44.2 bits (103), Expect = 0.090,   Method: Composition-based stats.
 Identities = 13/143 (9%), Positives = 43/143 (30%), Gaps = 3/143 (2%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + + A G    ++ +    +G Y  ++I     ++      +       +L +Q +   
Sbjct: 267 MYCLSADGKFLTVNAKFLDLMGLYNNEVIDKEPQEIFPAEVAERFAAAHQVLTQQQSSQN 326

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
                 ++ T +   + +       R  + +G    GI+       +     ++  +   
Sbjct: 327 YEVSL-VDYTGVQREMLVYEASFSDRADKVNGI--VGILLDMTERKEMEDELRKAKEAAD 383

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQ 228
            + + K    +    +       
Sbjct: 384 AMSQAKGDFLANMSHEIRTPMNA 406



 Score = 41.9 bits (97), Expect = 0.45,   Method: Composition-based stats.
 Identities = 22/228 (9%), Positives = 56/228 (24%), Gaps = 33/228 (14%)

Query: 286 KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYA 344
                 L + S       +            E   L  E +D  P P   + + G     
Sbjct: 220 HWLSQMLDDLSVAIQLSQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTV 279

Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
           N  FL L    + + I+              ++             +   + +  +  + 
Sbjct: 280 NAKFLDLMGLYNNEVIDKEP------QEIFPAEVAERFAAAHQVLTQQQSSQNYEVSLVD 333

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI------- 457
           +       + +      ++  +     GI  +  + +  + ++        ++       
Sbjct: 334 YTGVQREMLVYEASFS-DRADKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDF 392

Query: 458 LEATS-------DGIAI---------INREGI--ILSTNRAVSKLFGY 487
           L   S       + I           ++      +   N +   L G 
Sbjct: 393 LANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINESAKNLLGI 440


>gi|144898551|emb|CAM75415.1| two-component sensor/response regulator hybrid [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 1123

 Score =  362 bits (930), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 99/388 (25%), Positives = 170/388 (43%), Gaps = 18/388 (4%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           + +   +E E   L +I +  +DG+ +++  G+I+  N A   + GY   ++L       
Sbjct: 337 KRSSTALEHERASLKAITDTMADGLFVMDNHGLIVLANPAACAMLGYEENEMLGHQAHAL 396

Query: 501 LE----QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---C 553
                  +   +    + + +S             S K+ +++++ +    L        
Sbjct: 397 FHSHAVNDHLPISECPVFKAVSGGKP--YAGEEYFSHKDGRVIAMDVASMPLVQDGQLTG 454

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
                 DI+  K+ +  L  AK  AE+ +  KSDFLA +SHEIRTP+  IIG + ++ + 
Sbjct: 455 SVNAFRDITPRKETEQALIAAKHAAERANMAKSDFLATMSHEIRTPMNGIIGMTSLLLDT 514

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
                       Y N I  S   +L I+ND+LD SK+E+GK+     P  L   V   + 
Sbjct: 515 HLSS----EQNYYTNTIRVSAESLLTIINDILDFSKMEAGKLEFEETPFLLTPLVEGVVD 570

Query: 674 LVQLYANEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQ-IIISTTH 731
           ++   A  K I +  +   +  R+   D   ++Q+ LN+  NA+ FT  G   I ++   
Sbjct: 571 ILAPRAKAKGIGLTFAVPRDASRVFISDAGRLRQVLLNLAGNAVKFTEKGSVAITVTLEP 630

Query: 732 TSNEEV--ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
                V     + DTG+G+ +    +    F Q  +S   +  GTGLGL + + +V+A  
Sbjct: 631 KDETCVEACFAITDTGIGIPDEAKSRLFSRFTQADSSTARKFGGTGLGLVICQRIVEALG 690

Query: 790 GKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
           G     STP +G+     FPL     PH
Sbjct: 691 GAIGFDSTPGQGSRFWFQFPL-RLGDPH 717



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/264 (8%), Positives = 67/264 (25%), Gaps = 24/264 (9%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD-----LLKRQ 140
            + +D HG +   +      +G    +M+G +   +     ++ +  I +      +   
Sbjct: 361 LFVMDNHGLIVLANPAACAMLGYEENEMLGHQAHALFHSHAVNDHLPISECPVFKAVSGG 420

Query: 141 NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
             + G+      +G  + + +  A++P+  ++ + +G              +        
Sbjct: 421 KPYAGEEYFSHKDGRVIAMDV--ASMPLV-QDGQLTG--SVNAFRDITPRKETEQALIAA 475

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
                  +  K    +    +              + +   S  + Y      +  E   
Sbjct: 476 KHAAERANMAKSDFLATMSHEIRTPMNGIIGMTSLLLDTHLSSEQNYYTNTIRVSAESLL 535

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
            + ++     + E      L           L     +     +      L+       +
Sbjct: 536 TIINDILDFSKMEAG---KLEFEETPFLLTPLVEGVVDILAPRAKAKGIGLTFAVPRDAS 592

Query: 321 LTPETVDKCPIPFFVYSHGNLFYA 344
                        F+   G L   
Sbjct: 593 R-----------VFISDAGRLRQV 605


>gi|254475748|ref|ZP_05089134.1| multi-sensor hybrid histidine kinase [Ruegeria sp. R11]
 gi|214029991|gb|EEB70826.1| multi-sensor hybrid histidine kinase [Ruegeria sp. R11]
          Length = 742

 Score =  362 bits (930), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 89/395 (22%), Positives = 181/395 (45%), Gaps = 15/395 (3%)

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEI-EVMQLCSILEATSDGIAIINREGIILSTNRAV 481
           +  +N     ++ + ++    K + +  +  +L  + E  +D + +++ +G I   N A 
Sbjct: 202 RSRKNTLAVALQNKQLEQINAKLQAQQLQSERLAVVAENANDSVFLMDSDGRITWVNEAF 261

Query: 482 SKLFGYPVEDILRKPFTVFLEQNT-PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
           S++ GY  ++ + K     L        +   L    +               K+ +L+ 
Sbjct: 262 SRITGYQYDEAIGKLPGELLNGEDTDQAVIDALEAGRATGKP--FRLEIRNRRKDGQLIW 319

Query: 541 LRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
           L      +               D++  KQ + +L+ A+  AE+ +  KS+FLA +SHEI
Sbjct: 320 LETNQVPMLREDGSVETVIAVERDMTAAKQYEQQLNDARIAAEEGARVKSEFLATMSHEI 379

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTP+  +IG +++++        +     YA+ I  S   +L ++ND+LD+SK+++G++ 
Sbjct: 380 RTPMNGVIGMAQMLERTEL----DEEQRLYADTILGSARTLLSLINDVLDLSKMDAGEVT 435

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNA 715
           L            + + L +  A EK I +    A ++P++L  D R ++Q+ LN++ NA
Sbjct: 436 LSEVDFDPRACFQQTLKLFEPQAQEKGIQLHLDVAEDVPQLLNGDDRRLRQVILNLVGNA 495

Query: 716 IHFTPSGGQ-IIISTTHTSNE-EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
           + FT  G   + ++  HT +   +   V+D+G+G+   +  +  + F Q   +   R  G
Sbjct: 496 VKFTDDGAVAVSVNADHTRDHVTLRFSVKDSGIGIAPEQQSRIFERFSQADAAITRRFGG 555

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           TGLGL +++ + +A  G   + S   +G       
Sbjct: 556 TGLGLTISRLLCEAMGGDITVRSELGQGATFSAYL 590



 Score = 73.1 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/411 (6%), Positives = 96/411 (23%), Gaps = 40/411 (9%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTW 143
            + +D+ G +  ++E   +  G    + IG    ++ +    D    + +         +
Sbjct: 245 VFLMDSDGRITWVNEAFSRITGYQYDEAIGKLPGELLNGEDTDQAVIDALEAGRATGKPF 304

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +      +G    + ++   +P+   +          +                    
Sbjct: 305 RLEIRNRRKDG--QLIWLETNQVPMLREDGSVETV--IAVERDMTAAKQYEQQLNDARIA 360

Query: 204 FSHLHEIKKGHSSVEKEKYD-----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
                 +K    +    +       +           +  +     +        L +  
Sbjct: 361 AEEGARVKSEFLATMSHEIRTPMNGVIGMAQMLERTELDEEQRLYADTILGSARTLLSLI 420

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
             +L   +    E          +   +Q     +  ++E    L       +    +  
Sbjct: 421 NDVLDLSKMDAGEVTLSEVDFDPRACFQQTLKLFEPQAQEKGIQLHLDVAEDVPQLLNGD 480

Query: 319 ENLTPETVDKC-----------PIPFFVYSHGNLFYANPSF-----------------LL 350
           +    + +               +   V +     +    F                   
Sbjct: 481 DRRLRQVILNLVGNAVKFTDDGAVAVSVNADHTRDHVTLRFSVKDSGIGIAPEQQSRIFE 540

Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
                        GG    L   +L        + +          SA L       + +
Sbjct: 541 RFSQADAAITRRFGGTGLGLTISRLLCEAMGGDITVRSELGQGATFSAYLRMNPATGD-A 599

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
           +       +  +   + +     E   ++  + ++ ++ E ++L   ++ +
Sbjct: 600 VVENAQISDYQDNALDGLRVLVAEDNRINRLLIEKYLQDEPVELAFAMDGS 650


>gi|121535347|ref|ZP_01667159.1| PAS/PAC sensor signal transduction histidine kinase [Thermosinus
           carboxydivorans Nor1]
 gi|121306039|gb|EAX46969.1| PAS/PAC sensor signal transduction histidine kinase [Thermosinus
           carboxydivorans Nor1]
          Length = 664

 Score =  362 bits (930), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 99/362 (27%), Positives = 183/362 (50%), Gaps = 6/362 (1%)

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
            ++ E+        + +G  L  N+  +   G   ++++ +      E            
Sbjct: 293 ATVFESLPGYAFYRDVDGRYLLVNQQFAAALGLRPDEVIGRTIYELHEPARAQRYAAEDK 352

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLS 572
           +++  +L    ++  + S   + ++ ++ +  +              DI+E KQ + KL+
Sbjct: 353 QLIDGELSVWADEELIASGGRKLIVYMQKVPVRDEAGRVTGIIGLAVDITEHKQLEVKLT 412

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
            A   AE  +  K  FLA +SHE+RTPL AI+GFSEV+ +Q FGPL + + + Y N I  
Sbjct: 413 EALAAAEAANQAKDQFLAAMSHELRTPLNAIMGFSEVLLDQHFGPLNDKQQV-YVNDILD 471

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
           S   +L+I+ND+LD++K+ +GK N + E V + + + + + +++  A  K I +  +   
Sbjct: 472 SARHLLEIINDVLDLAKLNAGKTNFYPETVDIAKLLRQTLGIIKDRAAAKNIAVELAVDA 531

Query: 693 NIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751
            +P  +  D+R  KQI  N+LSNA+ FTP GG I +     + E + + V DTG+G+   
Sbjct: 532 GVPPQVQVDVRRFKQIMYNLLSNAVKFTPDGGAIKVECR-DAGEWLEISVEDTGIGIAAT 590

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF-STPAKGTLIEIIFPL 810
             E   +PF Q+  +   +  GTGLGL + + +V+ + G+ ++  S P +G+    + P+
Sbjct: 591 HAEHIFEPFYQVSGNLTAKTPGTGLGLAITRQLVELHGGRIWLERSEPGQGSRFTFVLPV 650

Query: 811 YD 812
             
Sbjct: 651 RQ 652



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/340 (7%), Positives = 77/340 (22%), Gaps = 20/340 (5%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN--TWYGKT 147
           D  G    ++++    +G    ++IG  + ++ +             L       W  + 
Sbjct: 307 DVDGRYLLVNQQFAAALGLRPDEVIGRTIYELHEPARAQRYAAEDKQLIDGELSVWADEE 366

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
               I      + + +  +P+       +G  G  +                        
Sbjct: 367 L---IASGGRKLIVYMQKVPVRDEAGRVTGIIGLAV--DITEHKQLEVKLTEALAAAEAA 421

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPP-HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
           ++ K    +    +             + +      L +      + +      LL    
Sbjct: 422 NQAKDQFLAAMSHELRTPLNAIMGFSEVLLDQHFGPLNDKQQVYVNDILDSARHLLEIIN 481

Query: 267 SSL-------PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
             L        +   +          +Q  G +++ +      +       +        
Sbjct: 482 DVLDLAKLNAGKTNFYPETVDIAKLLRQTLGIIKDRAAAKNIAVELAVDAGVPPQVQVDV 541

Query: 320 NLTPETV-DKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
               + + +       F    G +           +    D      G++          
Sbjct: 542 RRFKQIMYNLLSNAVKFTPDGGAIKVECRDAGEWLEISVED---TGIGIAATHAEHIFEP 598

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
              +   +  ++  T +  +     ++ +          P
Sbjct: 599 FYQVSGNLTAKTPGTGLGLAITRQLVELHGGRIWLERSEP 638


>gi|117926671|ref|YP_867288.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117610427|gb|ABK45882.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 927

 Score =  362 bits (930), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 120/534 (22%), Positives = 216/534 (40%), Gaps = 30/534 (5%)

Query: 293 QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLL 351
           ++  K        R   SL    +E   +T   +D+     F +   G + Y N      
Sbjct: 128 RSRQKLLEANRQLRESISLRRGVEEQLRMTQFAIDRLGDMVFLISPQGKIVYVNEKACQK 187

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411
            +Y+    +++     ++          + K   L       +   + L T     +NS+
Sbjct: 188 LQYEKEQLLQL-----SIEQIGCGHIETSWKEHWLKLKSYQTLTFQSHLRT-----KNSI 237

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471
                      +   +        +  D    + ++ +    L   +E     I I + E
Sbjct: 238 QFPVEIQSNYVKTSSHEYNYAFIRDITDRVHQEERLRL----LSRAVEYGPASIVITDAE 293

Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
           G I   N    K+ GY  E+++    ++     T   +   L + +S           + 
Sbjct: 294 GHIQYVNPKFEKITGYGAEEVIGNKPSLLKSGQTEPAIYDALWDSISRGHEWRG--ELIN 351

Query: 532 STKEEKLLSLRIIIKKL-----PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
             K+  L      I  +        + +     DI+  K+ +  L   +K AE  S  KS
Sbjct: 352 KRKDGSLYWEMAHISPVLSKTSGKITHFVGIKEDITSLKETEAHLELTQKKAEAASLAKS 411

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
           +FLA +SHEIRTP+ AI+G +E++   +           + +    +G  +L I+ND+LD
Sbjct: 412 EFLATMSHEIRTPMNAILGMTELLGETQLSI----EQRGFLSVCRSAGENLLQIINDILD 467

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVK 705
           ISK+ESG + L   P +L   V +A  +++  ++EK +        ++P  +L D   ++
Sbjct: 468 ISKVESGGLELQHVPFNLRRIVYDAGEVIRFRSHEKGLHQLIFIDESVPEWLLGDPARIR 527

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNE---EVILRVRDTGVGMTNYELEKAMKPFGQ 762
           QI +N L NAI FT +G    + +T        E++ RV DTG+G+   +       F Q
Sbjct: 528 QILINFLGNAIKFTEAGTIATVVSTTAGKGSQVEIVFRVIDTGIGIPESKQSVVFDAFKQ 587

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           + +S Q R  GTGLGL ++K + D   G+  + S    G+   +   L  ++ P
Sbjct: 588 LDSSTQRRYGGTGLGLTISKKLADLMGGQLGLKSQEGHGSTFTLSLRLSRSTGP 641



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 49/142 (34%), Gaps = 6/142 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKRQNTWYGKT 147
            DA G+++ ++ +  K  G  A ++IG +   + S        + + D + R + W G+ 
Sbjct: 290 TDAEGHIQYVNPKFEKITGYGAEEVIGNKPSLLKSGQTEPAIYDALWDSISRGHEWRGEL 349

Query: 148 TLWPIEGTNLYVPIDLAALPIYSR-NREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                +G+           P+ S+ + + + F   GI        +  A  +   KK   
Sbjct: 350 INKRKDGSLY--WEMAHISPVLSKTSGKITHF--VGIKEDITSLKETEAHLELTQKKAEA 405

Query: 207 LHEIKKGHSSVEKEKYDIFSQQ 228
               K    +    +       
Sbjct: 406 ASLAKSEFLATMSHEIRTPMNA 427


>gi|153828763|ref|ZP_01981430.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae 623-39]
 gi|148875716|gb|EDL73851.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae 623-39]
          Length = 1331

 Score =  362 bits (930), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 97/384 (25%), Positives = 171/384 (44%), Gaps = 10/384 (2%)

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
              +       R+ +RK+  +      IL+AT + +  ++ +G  L+ N     L G   
Sbjct: 450 AIQLSQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTVNAKFLDLMGLYN 509

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
            +++ K                    +      Q  E   +  T  ++ + +        
Sbjct: 510 NEVIDKEPQEIFPAEVAERFAAAHQVLTQQQSSQNYEVSLVDYTGVQREMLVYEASFSDR 569

Query: 550 FS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
               +     + D++E K+ +++L  AK+ A+  S  K DFLA +SHEIRTP+ AI+G +
Sbjct: 570 ADKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMA 629

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
            +  N            +Y   I+ S   +L I+ND+LD SK+E+GK+N+     +LD+ 
Sbjct: 630 HLALNTPLDTT----QRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDV 685

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI- 725
           +    ++V L A EK I        +IP  ++ D   + Q+ +N+  NA+ FT  G  + 
Sbjct: 686 LDNVTAVVSLKAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVL 745

Query: 726 --IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
              +S  +     +   V+DTG+G+   +L+     F Q  NS   +  GTGLGL ++K 
Sbjct: 746 SARVSQLNEQQVTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQ 805

Query: 784 MVDANMGKFYIFSTPAKGTLIEII 807
           +V+   G   + S   KG+  E  
Sbjct: 806 LVELMGGHITVHSEEGKGSTFEFS 829



 Score = 44.2 bits (103), Expect = 0.090,   Method: Composition-based stats.
 Identities = 13/143 (9%), Positives = 43/143 (30%), Gaps = 3/143 (2%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + + A G    ++ +    +G Y  ++I     ++      +       +L +Q +   
Sbjct: 485 MYCLSADGKFLTVNAKFLDLMGLYNNEVIDKEPQEIFPAEVAERFAAAHQVLTQQQSSQN 544

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
                 ++ T +   + +       R  + +G    GI+       +     ++  +   
Sbjct: 545 YEVSL-VDYTGVQREMLVYEASFSDRADKVNGI--VGILLDMTERKEMEDELRKAKEAAD 601

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQ 228
            + + K    +    +       
Sbjct: 602 AMSQAKGDFLANMSHEIRTPMNA 624



 Score = 41.9 bits (97), Expect = 0.47,   Method: Composition-based stats.
 Identities = 22/228 (9%), Positives = 56/228 (24%), Gaps = 33/228 (14%)

Query: 286 KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYA 344
                 L + S       +            E   L  E +D  P P   + + G     
Sbjct: 438 HWLSQMLDDLSVAIQLSQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTV 497

Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
           N  FL L    + + I+              ++             +   + +  +  + 
Sbjct: 498 NAKFLDLMGLYNNEVIDKEP------QEIFPAEVAERFAAAHQVLTQQQSSQNYEVSLVD 551

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI------- 457
           +       + +      ++  +     GI  +  + +  + ++        ++       
Sbjct: 552 YTGVQREMLVYEASFS-DRADKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDF 610

Query: 458 LEATS-------DGIAI---------INREGI--ILSTNRAVSKLFGY 487
           L   S       + I           ++      +   N +   L G 
Sbjct: 611 LANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINESAKNLLGI 658


>gi|262192397|ref|ZP_06050550.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae CT 5369-93]
 gi|262031750|gb|EEY50335.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae CT 5369-93]
          Length = 1331

 Score =  362 bits (930), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 97/384 (25%), Positives = 172/384 (44%), Gaps = 10/384 (2%)

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
              +       R+ +RK+  +      IL+AT + +  ++ +G  L+ N     L G   
Sbjct: 450 AIQLSQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTVNAKFLDLMGLYN 509

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
            +++ K                    +      Q  E   +  T  ++ + +        
Sbjct: 510 NEVIDKEPQEIFPAEVAERFAAAHQVLTQQQSSQNYEVSLVDYTGVQREMLVYEASFSDR 569

Query: 550 FS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
               +     + D++E K+ +++L  AK+ A+  S  K DFLA +SHEIRTP+ AI+G +
Sbjct: 570 ADKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMA 629

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
            +  N            +Y   I+ S   +L I+ND+LD SK+E+GK+N+     +LD+ 
Sbjct: 630 HLALNTPLDTT----QRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDV 685

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI- 725
           +    ++V L A EK I        +IP  ++ D   + Q+ +N+  NA+ FT  G  + 
Sbjct: 686 LDNVTAVVSLKAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVL 745

Query: 726 --IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
              +S  +     +   V+DTG+G+   +L+     F Q  NS   +  GTGLGL ++K 
Sbjct: 746 SARVSQLNEQQVTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQ 805

Query: 784 MVDANMGKFYIFSTPAKGTLIEII 807
           +V+   G+  + S   KG+  E  
Sbjct: 806 LVELMGGQITVHSEEGKGSTFEFS 829



 Score = 44.2 bits (103), Expect = 0.092,   Method: Composition-based stats.
 Identities = 13/143 (9%), Positives = 43/143 (30%), Gaps = 3/143 (2%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + + A G    ++ +    +G Y  ++I     ++      +       +L +Q +   
Sbjct: 485 MYCLSADGKFLTVNAKFLDLMGLYNNEVIDKEPQEIFPAEVAERFAAAHQVLTQQQSSQN 544

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
                 ++ T +   + +       R  + +G    GI+       +     ++  +   
Sbjct: 545 YEVSL-VDYTGVQREMLVYEASFSDRADKVNGI--VGILLDMTERKEMEDELRKAKEAAD 601

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQ 228
            + + K    +    +       
Sbjct: 602 AMSQAKGDFLANMSHEIRTPMNA 624



 Score = 41.9 bits (97), Expect = 0.45,   Method: Composition-based stats.
 Identities = 22/228 (9%), Positives = 56/228 (24%), Gaps = 33/228 (14%)

Query: 286 KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYA 344
                 L + S       +            E   L  E +D  P P   + + G     
Sbjct: 438 HWLSQMLDDLSVAIQLSQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTV 497

Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
           N  FL L    + + I+              ++             +   + +  +  + 
Sbjct: 498 NAKFLDLMGLYNNEVIDKEP------QEIFPAEVAERFAAAHQVLTQQQSSQNYEVSLVD 551

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI------- 457
           +       + +      ++  +     GI  +  + +  + ++        ++       
Sbjct: 552 YTGVQREMLVYEASFS-DRADKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDF 610

Query: 458 LEATS-------DGIAI---------INREGI--ILSTNRAVSKLFGY 487
           L   S       + I           ++      +   N +   L G 
Sbjct: 611 LANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINESAKNLLGI 658


>gi|17229208|ref|NP_485756.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17135536|dbj|BAB78082.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 1333

 Score =  362 bits (929), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 119/643 (18%), Positives = 251/643 (39%), Gaps = 32/643 (4%)

Query: 184  VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM--KNKVS 241
            V   R+D  P  L    ++ F  L E      +   +        S     +M  + +++
Sbjct: 545  VRQVRIDAIPFQLTAGGERYFLVLFEDMPPSVTAAPQAASKNPNVSSRQRQQMNDEQEIN 604

Query: 242  SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301
             L +  A   + L++       + +      E+  + N    +  +   T +   + + E
Sbjct: 605  RLGQELATTKEYLQSIIEEQQATNQDLRAANEEILSSNEELQSTNEELETAKEEIQATNE 664

Query: 302  YLSHRNHPSLSA--YFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVD 358
             L+  N          ++  N     +    IP  +      +    P+   +      D
Sbjct: 665  ELNTINEELQRRNVESNQVSNDLQNLLSSINIPILMLGGDMRIRRFTPTAGRIFNLIVTD 724

Query: 359  DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
                   ++  L  P L          L                +Q N  +   +   P+
Sbjct: 725  IGRPLSDINHKLTIPDLEAQILEVVGTLNLKT----------QEVQDNDGHWYDLRIRPY 774

Query: 419  EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
               +   +      +  +    + +  ++        +I+    + + I++ +  +++ N
Sbjct: 775  RTIDHKID--GAVVVLVDIDALKRSTEELRASKDYAEAIVATIRESLVILDIDLQVITAN 832

Query: 479  RAVSKLFGYPVEDILRKPFTVFLEQNTP-SVMNHYLTEILSLDLR-QTLEKITLGSTKEE 536
            +   + F    E+          +       +   L ++L    + Q LE         +
Sbjct: 833  QFFYEKFQVTPEETEHHLIYEIGDGQWNIPQLRSLLEDVLPQQTQFQNLEVEHNFERIGQ 892

Query: 537  KLLSLRII-IKKLPFSSCYSLTMHDISEWKQEKNKLSH-------AKKIAEKESSHKSDF 588
            K++ L    +  L       L + DI++ KQ + + +H       A+  AE  +  K +F
Sbjct: 893  KIMRLNARKMTLLDNRRMILLVIEDITQQKQLEAERTHLLAQEQSARNAAEAANHAKDEF 952

Query: 589  LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
            L+ +SHE+R PL +++G++ +++  +   +      +    I+RS      +++DLLD+S
Sbjct: 953  LSILSHELRNPLNSMLGWANLLRTHQLEEVT---VNQGLEAIERSAQAQNHLISDLLDVS 1009

Query: 649  KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIA 708
            +I SG++ +  + V L   +  AI++V+L A  K I I T        +L D   ++Q+ 
Sbjct: 1010 RISSGRLRMDAQEVELIPVIEAAIAVVRLAAEAKNIQIETKLDPTHTPMLGDPIRLQQVI 1069

Query: 709  LNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
             N+LSNAI FTP+ G+I ++  +T   +  ++V+DTG G+    L    + F Q   ++ 
Sbjct: 1070 WNLLSNAIKFTPTKGRIDVTLEYTYF-QAQIQVKDTGAGIKADFLPYVFERFRQADGTRT 1128

Query: 769  IRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFPL 810
               +G GLGL + + +V+ + G   + S    +G+   I  P+
Sbjct: 1129 RSNQGLGLGLSIVRHLVELHGGTVEVESQGEGQGSTFTIKLPV 1171


>gi|119776242|ref|YP_928982.1| putative integral membrane sensor protein [Shewanella amazonensis
           SB2B]
 gi|119768742|gb|ABM01313.1| multi-sensor hybrid histidine kinase [Shewanella amazonensis SB2B]
          Length = 1141

 Score =  362 bits (929), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 114/510 (22%), Positives = 209/510 (40%), Gaps = 26/510 (5%)

Query: 312 SAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
           S    E +      ++        + SHG +   N +   L  +++ + I     +  L+
Sbjct: 263 SLRASESKRRVQAIMETAIDGIVTIDSHGIITDVNQATEKLLGWRADELIGQNVKI--LM 320

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
             P  S+++      L   +   I     +  I  N      +         +  E+   
Sbjct: 321 PDPFHSEHDGYLARYLATGEARIIGKGREVEAIHKNG---HKIAIRLGIGHVKMAEDDFF 377

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII---NREGIILSTNRAVSKLFGY 487
                +       +  +     +  S++     GIA     + +  ++  + AV K+ GY
Sbjct: 378 VAFISDIRQRLSMEMALRENEQKFRSLIGNIP-GIAYRCKNDEQWSMIFISNAVEKITGY 436

Query: 488 PVEDIL----RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           P  D +    ++ F+     +       ++   +       LE   L    + + +    
Sbjct: 437 PASDFMLPSPKRSFSDLFHPDD----LEHINNAVPPVGAFNLEYRILHRNGDIRWMMEYG 492

Query: 544 IIKKLPFSSCYS--LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
              +   S        + DI+E +Q + +L  AK IAE  ++ ++ FLA +SHEIRTP+ 
Sbjct: 493 NHVRDQQSGEMYLDGFIMDITERRQMEQELLEAKDIAEAAATARAAFLANMSHEIRTPMN 552

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           AIIGFS+++   +F P        +   I+ +   +L ++ND+LD +K++ GK+ L    
Sbjct: 553 AIIGFSDILLESQFEP----EKHRHLKTINHAAKSLLHLLNDVLDSAKLDKGKLELEVRD 608

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTP 720
            SL + + E IS + L A  K + +    +  +          ++Q+  N++SNA+ FT 
Sbjct: 609 FSLVQELDEVISTLWLQARRKGLQLTMEVSPKLLPCYAGSPERIRQVLTNLVSNAVKFTE 668

Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
            G Q+ ++        V   V DTG+GM+  +L+K   PF Q   S   R  GTGLG  +
Sbjct: 669 KG-QVRLTVNPGQGNHVDFVVEDTGIGMSPEQLDKIFDPFTQADASMSRRFGGTGLGTTI 727

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           +K +V+   G     S   KG+      PL
Sbjct: 728 SKQLVELMGGHISAGSELGKGSRFCFSLPL 757



 Score = 43.9 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 23/252 (9%), Positives = 71/252 (28%), Gaps = 25/252 (9%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD-ILHIDPNNHIGDLLKRQNTWY--- 144
           ID+HG + ++++   K +G  A ++IG  +  +     H + + ++   L          
Sbjct: 287 IDSHGIITDVNQATEKLLGWRADELIGQNVKILMPDPFHSEHDGYLARYLATGEARIIGK 346

Query: 145 -GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +       G  + + + +  + +   +           +   R         +  ++K
Sbjct: 347 GREVEAIHKNGHKIAIRLGIGHVKMAEDDF------FVAFISDIRQRLSMEMALRENEQK 400

Query: 204 FSHLHEIKK--GHSSVEKEKYDIFSQQS--------PPPHLRMKNKVSSLTEYYAHKDDV 253
           F  L        +     E++ +    +        P     + +   S ++ +   D  
Sbjct: 401 FRSLIGNIPGIAYRCKNDEQWSMIFISNAVEKITGYPASDFMLPSPKRSFSDLFHPDD-- 458

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
              E          +   +      N +     +Y   +++               +   
Sbjct: 459 --LEHINNAVPPVGAFNLEYRILHRNGDIRWMMEYGNHVRDQQSGEMYLDGFIMDITERR 516

Query: 314 YFDEGENLTPET 325
             ++      + 
Sbjct: 517 QMEQELLEAKDI 528


>gi|292492086|ref|YP_003527525.1| PAS sensor protein [Nitrosococcus halophilus Nc4]
 gi|291580681|gb|ADE15138.1| PAS sensor protein [Nitrosococcus halophilus Nc4]
          Length = 914

 Score =  362 bits (929), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 121/758 (15%), Positives = 243/758 (32%), Gaps = 53/758 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMR-LCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
           ID    L  I+    + +     +++G        +    D    +   ++     + + 
Sbjct: 47  IDQQWRLTYINPAAIRLMDKPLEEILGQVCWGLFPEAKETDFYTQLHRAMEENIPVHFEA 106

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
             +P       +  +  A P         G   F                +   ++   L
Sbjct: 107 FYFPSA-----LWYECDAYPSAD------GLSVF--FRNISERKQMERQLRERAEEIEKL 153

Query: 208 HEIKK--GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA-------------HKDD 252
            E+       + + E   I    +    L++  +V+                    H+  
Sbjct: 154 MEVLPLGIVFAHDPECQRITGNPTAHKLLQLPPQVNLSKTAPPNERPLNYKVCRNGHEIP 213

Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF----EYLSHRNH 308
             +       T        + D    + +  +   Y   L +   +       ++     
Sbjct: 214 PQELPLQYAATHGVEVRDSEFDLVFNDGSATSIYGYASPLFDEKGQVRGCIGAFMDITER 273

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLS 367
                   E        +      ++ ++   +    +  F  +  Y S+D+I       
Sbjct: 274 KRAEQALSESRRRQSAVIQASNASYYEFATDLSWGTVDRRFAEMLGY-SLDEIPPVPERW 332

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK-ANQFPE 426
              +     ++        +   +  I    + + ++    +      +      N    
Sbjct: 333 DWWEQRLHPEDRERTLQAYHDFVQDLIPVLRQEYRLRHKDSSWRWWRVVSTTVKRNSQEY 392

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
                G+  +  + R  +  +     +   + E   D I     +G    TN    +   
Sbjct: 393 ATAIAGLIFDITEQRQAEEALRESEERFRVMAETVPDIIFTSRPDGSREYTNPRFYEHTR 452

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
              E      +   L  +    +       +     +  E          +    +    
Sbjct: 453 LTPEAAEGSGWMAALHPDDLEQVKTRWRHSVETG--ELFEAQYRLRDGNGRYRWFQGRAH 510

Query: 547 KLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
            +   +     +     DI +       L H ++  ++    K++FLA + HE+R PL  
Sbjct: 511 PIRNETGQITKWFGACSDIHD-------LVHIQEALKETDRCKNEFLAMLGHELRNPLAP 563

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           I    E+++     P       +  + IDR    +  +VNDLL++++I +GK+NL  +PV
Sbjct: 564 ICNAVELMRMHLHHP---AIQSKSIDIIDRQAKHLTRLVNDLLNVARIVTGKINLKTQPV 620

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
            L E V +A+   Q      R  +  S      ++ AD   + QI  N+L+NA+++TPSG
Sbjct: 621 ELKEVVMQAVETAQPAIESARHELTLSLPAQPLKVEADPVRLVQIVANLLNNAVNYTPSG 680

Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
           G I +    +   E I+RVRD GVG+   +L      F Q   S      G GLGL L  
Sbjct: 681 GHIQLQVAQSQEGEAIIRVRDNGVGILPEKLPYIFDIFTQADRSLDQAQSGLGLGLTLVH 740

Query: 783 AMVDANMGKFYIFST-PAKGTLIEIIFPLYDTSHPHDC 819
            + + + GK +  S  P +G+   I  PL   S   + 
Sbjct: 741 RLTEMHGGKAFALSEGPGRGSEFTIHLPLILESTSQEI 778



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 33/297 (11%), Positives = 77/297 (25%), Gaps = 34/297 (11%)

Query: 315 FDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
           F +        +D        +     L Y NP+ + L      + +             
Sbjct: 26  FWKTPPNIENILDSITDAFVLIDQQWRLTYINPAAIRLMDKPLEEILGQVCW------GL 79

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
                       L+R+    I                           + +P     +  
Sbjct: 80  FPEAKETDFYTQLHRAMEENIPVHFEAFYFPSALWYEC----------DAYPSADGLSVF 129

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIA-IINREGIILSTNRAVSKLFGYPVE-- 490
                + +  +R++     ++  ++E    GI    + E   ++ N    KL   P +  
Sbjct: 130 FRNISERKQMERQLRERAEEIEKLMEVLPLGIVFAHDPECQRITGNPTAHKLLQLPPQVN 189

Query: 491 -----DILRKPFTVFLEQNTPSVMNHYLT-EILSLDLRQTLEKITLGSTKEEKLLSLRII 544
                    +P    + +N   +    L  +  +    +  +        +    S+   
Sbjct: 190 LSKTAPPNERPLNYKVCRNGHEIPPQELPLQYAATHGVEVRDSEFDLVFNDGSATSIYGY 249

Query: 545 IKKLPFS----SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS----DFLARVS 593
              L               DI+E K+ +  LS +++         +    +F   +S
Sbjct: 250 ASPLFDEKGQVRGCIGAFMDITERKRAEQALSESRRRQSAVIQASNASYYEFATDLS 306


>gi|254415056|ref|ZP_05028819.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196178203|gb|EDX73204.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 2724

 Score =  362 bits (929), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 128/751 (17%), Positives = 261/751 (34%), Gaps = 54/751 (7%)

Query: 86   TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
             + + A G + +   +  + +       +  ++ +V      +        +    +   
Sbjct: 1771 LFRLAADGTILDFRTKNYQALYTSPDSFVNHKIQEVFPTDAGEKLYAAIQQVLTTKSLVS 1830

Query: 146  KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
                 P+     Y   +   +P+     E        +                   +F+
Sbjct: 1831 VEYSLPLNQEEQYF--EARMVPL--NQNEV-----IALTRNISDRKQAELALAASQARFA 1881

Query: 206  HLHEIKKGHSSVEKEKYDIFSQQSPPPHL-------RMKNKVSSLTEYYAHKDDVLKTEK 258
             + EI K        +  I         +        +   +  L    A          
Sbjct: 1882 GILEIAKDGIISVDSEQRIILFNQGAEQMFGYKADQILGQSLDLLLPPRAATIHRQHVTN 1941

Query: 259  YPLLTSEESSLPEQED--FHTINLNQYTKKQYFGTL--QNNSKESFEYLSHRNHPSLSAY 314
            +     +   + E+ +      N  ++  +     L        +       +       
Sbjct: 1942 FAQYAGKARQMGERNELFGRRRNGTEFPMEASISKLDINGEIICTAILRDISDRKQAELA 2001

Query: 315  FDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
              + + +     D  PI    Y  G  + + NP+      + S+ ++     ++ +   P
Sbjct: 2002 LSQQKEILQTIFDSIPILLCFYKEGVEVEFINPALEQTLGW-SLAEMRDIDIMAEIYPDP 2060

Query: 374  KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
                +       + ++D T      +           L +T+      +         GI
Sbjct: 2061 DYRTSVLD---FMLKADGTWQDFQTQTRR-----GEVLEITWANIRLPDGS-----TVGI 2107

Query: 434  EPEDVDTRINKRKMEIEVMQLCSILEATSDGIA---IINREGII--LSTNRAVSKLFGYP 488
              +  + +  +  ++    QL ++ +   +G+    +    G          + +L G  
Sbjct: 2108 GKDITERKQAELAIQEREYQLRTLADNLPNGLIYQLVREPNGQFYFSYITAGIERLVGIK 2167

Query: 489  VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
             E I++    +F          +Y     S       E      T    +    +     
Sbjct: 2168 PEVIIQDASVLFNLIVDEDRQLNYQLNEESWRNLSIYEMQMRKRTPSGDIRWSYVRSAPR 2227

Query: 549  PFSSC---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
                    +     DI+E K+ + +L+ AK  AE  +  KS FLA +SHE+RTPL  I+G
Sbjct: 2228 RLVDGRTVWDGIEIDITELKKTEIELAQAKDAAEAANRAKSAFLASMSHELRTPLNGILG 2287

Query: 606  FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
            +++++K          +  +    I + G  +L ++ND+LD+SK+E+GK+ L+ E     
Sbjct: 2288 YAQILKTN---SNLTQKQKDGIEIIHQCGEHLLTLINDILDLSKVEAGKLELYPEDFHFP 2344

Query: 666  EAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ 724
              +     + +L A +K I    +   +IP+ +  D + ++QI +N+LSNA+ FT +G  
Sbjct: 2345 SFLVGLCEIFRLKAIQKDITFNYNPPTHIPQIVHGDEKRLRQILMNLLSNAVKFTDTGTV 2404

Query: 725  I----IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
                 II     +N+++  +V DTG+GM+  +LEK   PF QI        EGTGLGL +
Sbjct: 2405 TFTVNIIHKGQMTNDKIRFQVEDTGIGMSAEDLEKIFLPFEQIKE-TSRHHEGTGLGLAI 2463

Query: 781  AKAMVDANMGKFYIFSTPAKGTLIEII--FP 809
             K ++     +  + S P  G+        P
Sbjct: 2464 TKKLIALMGSQIRVESHPGVGSKFWFEVDLP 2494



 Score =  143 bits (361), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 54/522 (10%), Positives = 141/522 (27%), Gaps = 35/522 (6%)

Query: 86   TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
             W+ID +G    ++ ++ + +G    +M+G  +    D           +  ++      
Sbjct: 1139 IWSIDMNGNTIFVNPKMAQMLGCSVEQMLGQPMFAFMDEAGKAMATRNLERRRQGIHEKH 1198

Query: 146  KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
            +      +G++  +   +A  PI   + + +G  G  ++             +  ++ + 
Sbjct: 1199 EFKFRRNDGSD--LWTLIATTPICDTSGQCTGTLG--MITDITDRKRAEDALRYSEQLYR 1254

Query: 206  HLH-EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
             +      G   +   +                    ++ E     + + + E   + T 
Sbjct: 1255 TMAKNFPNGAIFLFDHELRYLVADGQGLGRSGSGYSRNILEGQTIWEVLSEQECAVVETL 1314

Query: 265  EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
               +L   E    +      +      +++ + E    +      +     +E    +  
Sbjct: 1315 YREALAGIEKTLEMPYRNRIQLVQTRAVRDEAGEIIAGMVVAQDITERKQTEEALRESEA 1374

Query: 325  ----TVDKCPIPFFVYS-----HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
                  +      F+              NP+   ++       +  +      L     
Sbjct: 1375 FLRSIYEGIEAAVFIVDVLENGEFRYVSINPTHERMSG------LRNSEIKGKTLHEVLT 1428

Query: 376  SDNNAIKPVMLYR--SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
             D          R  +    I     L     +               +         G 
Sbjct: 1429 PDIAEAVCQRYRRCLAAGEKITYEHSLQINGKDS----WWISNLTPLKDSNSRIYRLIGT 1484

Query: 434  EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG-IILSTNRAVSKLFGYPVEDI 492
                 D +  + +++     +  I+ A+   + + +      L  NR    + GY   +I
Sbjct: 1485 ALNISDRKQIELQLKENQRFIEKIINASPQLLYLFDPTAETDLYINRQSLDILGYTPAEI 1544

Query: 493  LRK---PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
            + +    F   L  +   ++   L    +      L   +    K+     L        
Sbjct: 1545 VGRGMQFFLDTLHPDDLPLIERNLNFWHTASDSDILTTESRFRHKDGSWCWLLSREVVFE 1604

Query: 550  FSSC-----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
                        T  DI+E K+ ++ L   ++I    +   S
Sbjct: 1605 RDENNQVIKILGTSQDITELKEAEDALRRYERIVSSTTDAIS 1646



 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 62/501 (12%), Positives = 136/501 (27%), Gaps = 34/501 (6%)

Query: 96   KEISEELPKTIGNYAFKMIGMR---LCDVSDILHI---DPNNHIGDLLKRQNTWYGKTTL 149
              I+ +    +G    +++G       D      +   + N +        +    ++  
Sbjct: 1527 LYINRQSLDILGYTPAEIVGRGMQFFLDTLHPDDLPLIERNLNFWHTASDSDILTTESRF 1586

Query: 150  WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK------K 203
               +G+  ++   L+   ++ R+      +  G         +     +R ++       
Sbjct: 1587 RHKDGSWCWL---LSREVVFERDENNQVIKILGTSQDITELKEAEDALRRYERIVSSTTD 1643

Query: 204  FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
               L +    +  V +   D   +          + +     +       L         
Sbjct: 1644 AISLVDRDYTYQIVNQAYLDWNQKHYDEIVGHSVSNLLGEEVFVQVIKPNLDRCLAGETI 1703

Query: 264  SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
            + +                 T   Y    Q  S       +      +     +      
Sbjct: 1704 NYQEWF--DYPGGKQEFISVTYIPYVDANQQISGVVVNCRNLTELKQVETQLRQTNQEMQ 1761

Query: 324  ETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
               D  P   F  +         +      Y S D              P  +       
Sbjct: 1762 AIFDAFPDILFRLAADGTILDFRTKNYQALYTSPDSFVNHKIQEVF---PTDAGEKLYAA 1818

Query: 384  VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
            +    + ++ ++    L          L      FE             +     D +  
Sbjct: 1819 IQQVLTTKSLVSVEYSLP---------LNQEEQYFEARMVPLNQNEVIALTRNISDRKQA 1869

Query: 444  KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            +  +     +   ILE   DGI  ++ E  I+  N+   ++FGY  + IL +   + L  
Sbjct: 1870 ELALAASQARFAGILEIAKDGIISVDSEQRIILFNQGAEQMFGYKADQILGQSLDLLLPP 1929

Query: 504  NTPSVMNHYLTEIL--SLDLRQTLEK-ITLGSTKEEKLLSLRIIIKKLPFSSCYS--LTM 558
               ++   ++T     +   RQ  E+    G  +      +   I KL  +        +
Sbjct: 1930 RAATIHRQHVTNFAQYAGKARQMGERNELFGRRRNGTEFPMEASISKLDINGEIICTAIL 1989

Query: 559  HDISEWKQEKNKLSHAKKIAE 579
             DIS+ KQ +  LS  K+I +
Sbjct: 1990 RDISDRKQAELALSQQKEILQ 2010



 Score =  134 bits (337), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 62/536 (11%), Positives = 152/536 (28%), Gaps = 56/536 (10%)

Query: 90   DAHGYLKEI-SEELPKTIGNYAFKMIGMRLCDVSDILH-----IDPNNHIGDLLKRQNTW 143
            D +        + L +  G+    ++G  L +V    +        +  +  + + Q   
Sbjct: 766  DPNLRYLVADGQALTEA-GHRGEALLGKTLWEVLPPENCALVEPLYHAALAGVEQTQEIS 824

Query: 144  YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
            +G  T                   + +         G  +               R + +
Sbjct: 825  FGDFTYLCQS------------TAVRNNAGTII--AGMVVTQNITERKQFEQALIRSENR 870

Query: 204  FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL- 262
            F  + +       V       F   SP           SL ++     + +  E  PL+ 
Sbjct: 871  FQEIAKTVSQFFFVRSANSGEFLYVSPAYETIWGRSCESLYQHPESWIEAVHPEDRPLVL 930

Query: 263  -----TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
                   +  S+  +      N  Q         ++N + E   ++      +     + 
Sbjct: 931  NSLNQQFQGHSVKREYRIIQPNGEQRWIIADVSVVRNEAGEPLRFVGVAEDITERKQAEL 990

Query: 318  GENLTPE----TVDKCPIPFF---VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
                  E     +   P   F   +    +  + + +   +  Y +   I  A      +
Sbjct: 991  ELQSIKERLQYLLTASPAVIFSSQIEGDYSATFMSENASTILGYNAEKFIHNAQFWCERV 1050

Query: 371  DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
                 +  N + P +  +            +  Q        +T       ++    +  
Sbjct: 1051 HPEDKAVMNEVIPQLFAQGH------CTYEYRFQHGDGTYHWLTTQLRLVQDETGTPIEC 1104

Query: 431  NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490
             G   +  + +  +  +  +  +   I+E   +GI  I+  G  +  N  ++++ G  VE
Sbjct: 1105 VGYLIDITERKQAEESLREQEEEYRRIVETADEGIWSIDMNGNTIFVNPKMAQMLGCSVE 1164

Query: 491  DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
             +L +P          +        +         +        +   L   I    +  
Sbjct: 1165 QMLGQP---MFAFMDEAGKAMATRNLERRRQGIHEKHEFKFRRNDGSDLWTLIATTPICD 1221

Query: 551  SSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESSHKS-----DFLARVSHEIR 597
            +S         + DI++ K+ ++ L +++++    +  K+      FL    HE+R
Sbjct: 1222 TSGQCTGTLGMITDITDRKRAEDALRYSEQLY--RTMAKNFPNGAIFLFD--HELR 1273



 Score =  118 bits (297), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 66/531 (12%), Positives = 143/531 (26%), Gaps = 35/531 (6%)

Query: 78   PIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI--GMRLCDVSDILHIDPNNHIGD 135
                 V F+  I+       +SE     +G  A K I      C+          N +  
Sbjct: 1004 TASPAVIFSSQIEGDYSATFMSENASTILGYNAEKFIHNAQFWCERVHPEDKAVMNEVIP 1063

Query: 136  LLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA 195
             L  Q     +      +GT  Y  +      +           G+ I            
Sbjct: 1064 QLFAQGHCTYEYRFQHGDGT--YHWLTTQLRLVQDETGTPIECVGYLI--DITERKQAEE 1119

Query: 196  LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS-PPPHLRMKNKVSSLTEYYAHKDDVL 254
              +  ++++  + E             +           L    +       +A  D+  
Sbjct: 1120 SLREQEEEYRRIVETADEGIWSIDMNGNTIFVNPKMAQMLGCSVEQMLGQPMFAFMDEAG 1179

Query: 255  KTEKYPLLTSEESSLPEQEDF--HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
            K      L      + E+ +F     + +          + + S +    L      +  
Sbjct: 1180 KAMATRNLERRRQGIHEKHEFKFRRNDGSDLWTLIATTPICDTSGQCTGTLGMITDITDR 1239

Query: 313  AYFDEGENLTPETVDKC-----PIPFFVYSHG-NLFYANPSFLLLTKYK-SVDDIEIAGG 365
               ++    + +              F++ H      A+   L  +    S + +E    
Sbjct: 1240 KRAEDALRYSEQLYRTMAKNFPNGAIFLFDHELRYLVADGQGLGRSGSGYSRNILEGQTI 1299

Query: 366  LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
               L +          +  +        +    R+  +Q                 ++  
Sbjct: 1300 WEVLSEQECAVVETLYREALAGIEKTLEMPYRNRIQLVQTR------------AVRDEAG 1347

Query: 426  ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN----REGIILSTNRAV 481
            E +    +  +  + +  +  +      L SI E     + I++     E   +S N   
Sbjct: 1348 EIIAGMVVAQDITERKQTEEALRESEAFLRSIYEGIEAAVFIVDVLENGEFRYVSINPTH 1407

Query: 482  SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
             ++ G    +I  K     L  +    +       L+   + T E     + K+   +S 
Sbjct: 1408 ERMSGLRNSEIKGKTLHEVLTPDIAEAVCQRYRRCLAAGEKITYEHSLQINGKDSWWIS- 1466

Query: 542  RIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
             +   K   S       T  +IS+ KQ + +L   ++  EK  +     L 
Sbjct: 1467 NLTPLKDSNSRIYRLIGTALNISDRKQIELQLKENQRFIEKIINASPQLLY 1517



 Score =  115 bits (287), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 49/514 (9%), Positives = 134/514 (26%), Gaps = 55/514 (10%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS--DILHIDPNNHIGDLLKRQNTWYGK 146
            +D     + +++        +  +++G  + ++   ++       ++   L    T   +
Sbjct: 1648 VDRDYTYQIVNQAYLDWNQKHYDEIVGHSVSNLLGEEVFVQVIKPNLDRCLA-GETINYQ 1706

Query: 147  TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                   G   ++ +    +P    N++ SG                    ++ +++   
Sbjct: 1707 EWFDYPGGKQEFISVT--YIPYVDANQQISGV--VVNCRNLTELKQVETQLRQTNQEMQA 1762

Query: 207  LHEIKKGHSSVEKEKYDIFSQQSPP--PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
            + +              I   ++          +   +         D  +     +   
Sbjct: 1763 IFDAFPDILFRLAADGTILDFRTKNYQALYTSPDSFVNHKIQEVFPTDAGEKLYAAIQQV 1822

Query: 265  EES-SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
              + SL   E    +N  +   +     L  N   +    +  +           +    
Sbjct: 1823 LTTKSLVSVEYSLPLNQEEQYFEARMVPLNQNEVIALTR-NISDRKQAELALAASQARFA 1881

Query: 324  ETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP--------- 373
              ++        V S   +   N     +  YK+   +     L  LL            
Sbjct: 1882 GILEIAKDGIISVDSEQRIILFNQGAEQMFGYKADQILGQ--SLDLLLPPRAATIHRQHV 1939

Query: 374  --------KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
                    K         +   R + T     A +  +  N E                 
Sbjct: 1940 TNFAQYAGKARQMGERNELFGRRRNGTEFPMEASISKLDINGEIICT------------- 1986

Query: 426  ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
                   I  +  D +  +  +  +   L +I ++    +        +   N A+ +  
Sbjct: 1987 ------AILRDISDRKQAELALSQQKEILQTIFDSIPILLCFYKEGVEVEFINPALEQTL 2040

Query: 486  GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
            G+ + ++        +  +     +     + +    Q  +      T+  ++L +    
Sbjct: 2041 GWSLAEMRDIDIMAEIYPDPDYRTSVLDFMLKADGTWQDFQ----TQTRRGEVLEITWAN 2096

Query: 546  KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579
             +LP  S       DI+E KQ +  +   +    
Sbjct: 2097 IRLPDGS-TVGIGKDITERKQAELAIQEREYQLR 2129



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 73/632 (11%), Positives = 161/632 (25%), Gaps = 96/632 (15%)

Query: 15  TSNCKGNTQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTF 74
           T+N +G  Q + +  +   F+      + P  DS+         +        L      
Sbjct: 157 TANLQG--QRIKRTHVRYDFDPHN---DPPQGDSW-YQATKQAGKGIWHPLVSLSQGVDQ 210

Query: 75  VFDPIPRTVRFTWNIDAHGYL------KEISEELPKTIGNYAFKMIGMRLCDVSDILHID 128
               I   + F    D+ G             EL + +        GM +     +  I+
Sbjct: 211 PLLLIANFLPFN---DSEGTFQGILTATFFVPELAEFL-------EGMEVGKTGQVFIIN 260

Query: 129 PNNHIGDLLKRQNTWY---GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVH 185
               +      +  +               +  +P+  +  P+      F   +    V 
Sbjct: 261 RKGDLVASSTGEIPFKPDLDADYRKNKNLQDWRLPVQQSRNPLTKAAVNFLLTQ----VK 316

Query: 186 VNRVDNDPRALGKRLD--KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL 243
                   +      +  + F H++ I++           +   +             +L
Sbjct: 317 HQSEIKQDQTFKFTFNDNRYFLHINPIQEQSGLNWFIVTVVPESEFMAEIYANTRTTIAL 376

Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSL--PEQEDFHTINLNQYT--KKQYFGTLQNNSKES 299
                    +L       +T     L     E             +    G L N+    
Sbjct: 377 CIAALILSILLGISTARWVTKPILQLNIAADEIARGEWQQSIPINRGDEVGQLANSFNIM 436

Query: 300 FEYLSH--RNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKS 356
              L        + +    + E+   + ++  P+   V+   G L YAN     L + ++
Sbjct: 437 AAQLRQFFTQLQASNKALSQSEHNLTQILEAIPVGISVHDVTGQLTYANQKSKELLEIET 496

Query: 357 V-----DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411
           +     +D+ I   +            N      L R                      +
Sbjct: 497 LPDAKIEDLAITYQIYQSDTQQLYPVENLPAVRALNREQTIVDDLEIHQRN------QII 550

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR------------------KMEIEVMQ 453
            +        ++    +       +  + +  +                   ++     +
Sbjct: 551 PVEAYGTPLLDKNATILGAIVAFFDITERKQAEALQRNYHRILEANVAQRTAELRDANER 610

Query: 454 L---------------------CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
           L                      +I EA +D + +I+ E  I   N A +K      ED 
Sbjct: 611 LKGEMAERQLLEGKLYSSEQQIRTIFEAINDIVLMIDAEKNI---NVAPTKRTYLSPEDS 667

Query: 493 LRKP-FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
                      Q+        + ++L        +        +   + L I I  L   
Sbjct: 668 HLLNLIVEQFFQDPEDSWFAQVQQVLDSQEPLYFDYNLTL---DNHEMWLTISIAPLSDQ 724

Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
           +       DIS+ KQ ++ L  ++ +    + 
Sbjct: 725 A-VIWVARDISDRKQVEDALRTSEYLYRAMAR 755



 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/195 (14%), Positives = 66/195 (33%), Gaps = 10/195 (5%)

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
           +   + S+ +             N+    +       + + + +      L  ILEA   
Sbjct: 411 RGEWQQSIPINRGDEVGQLANSFNIMAAQLRQFFTQLQASNKALSQSEHNLTQILEAIPV 470

Query: 464 GIAIINREGIILSTNRAVSKLFGY---PVEDILRKPFTVFLEQNTPSVMN--HYLTEILS 518
           GI++ +  G +   N+   +L      P   I     T  + Q+    +     L  + +
Sbjct: 471 GISVHDVTGQLTYANQKSKELLEIETLPDAKIEDLAITYQIYQSDTQQLYPVENLPAVRA 530

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHA 574
           L+  QT+        +  +++ +      L   +       +   DI+E KQ +    + 
Sbjct: 531 LNREQTIVDDLEIHQRN-QIIPVEAYGTPLLDKNATILGAIVAFFDITERKQAEALQRNY 589

Query: 575 KKIAEKESSHKSDFL 589
            +I E   + ++  L
Sbjct: 590 HRILEANVAQRTAEL 604


>gi|302036186|ref|YP_003796508.1| putative hybrid histidine kinase [Candidatus Nitrospira defluvii]
 gi|300604250|emb|CBK40582.1| putative Hybrid histidine kinase [Candidatus Nitrospira defluvii]
          Length = 1431

 Score =  362 bits (929), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 120/651 (18%), Positives = 226/651 (34%), Gaps = 43/651 (6%)

Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM---KNKVSS 242
                +      KR ++    + E       V++ +   F++ +          ++ +  
Sbjct: 342 EAADRHKAETETKRAEQFLDSVIENLPIMVYVKEAEQLRFTRWNRAAEELTGFSRDLILG 401

Query: 243 LTEYYAHKDDVLKT---EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
            T +   + +            L S        E+ HT +      +     + +     
Sbjct: 402 RTGHDFFRKEEADRFTLHDREALRSGRLIEVASEEIHTQHRGVRLLRTKKLPVMDEQGRP 461

Query: 300 FEYLSHRNHPSLSAYFD----EGENLTPETVDKCPIPFFVYSHGN--LFYANPSFLLLTK 353
              L      +  +  +    E E    E  +       + +  N      NP+ + L  
Sbjct: 462 RFLLGIAEDITDRSAHESILHESEEKYRELFESSRDAIMILASPNWNFTACNPATVQLFG 521

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
            +  +     G       +P+   +     V   +     +   +        R    A 
Sbjct: 522 ARDAEHFTSLGPWD---VSPEHQPDGEESMVKAPKMIGMALQEGSHSFEWLHKRVGGPAF 578

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
                                 +  + R ++  ++       ++L+     I     +G+
Sbjct: 579 LASVQLTRITLKGTTGLQATVRDITEQRRSEATLQAYSTFQKAMLDNAGHAIISCKPDGM 638

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL-------- 525
           I   N A   L GY  ++++ K            V              +          
Sbjct: 639 IQVFNPAAEALLGYSADELVGKQTPGIFHDLDEVVARARQFSAELGTTIEPGFDVFVEKC 698

Query: 526 ------EKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAK 575
                 E       K+    ++ + +  L  +      Y     DI+  K    +L  AK
Sbjct: 699 RRNLPNEHEWAYVCKDGTRKTVLLNVTALREADGRITGYLGIATDITPLKLTAQELVSAK 758

Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
           + AE  +  KS FLA +SHEIRTPL  ++G +E++ +         +       + RSG 
Sbjct: 759 EAAEAANVAKSRFLANMSHEIRTPLNGVLGMTELLLSTSLSA----KQQSLLETVRRSGV 814

Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695
            +L+++ND+LD SKIE+GK+ L      L + V EA+ L    A  K++ +      ++P
Sbjct: 815 ALLEVINDILDFSKIEAGKLELEQVEFGLRQVVEEAVELFAGSAGNKKLELTYFIPADVP 874

Query: 696 R-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDTGVGMTN 750
             ++ D   ++QI LN++ NAI FT  G ++ ++            +  RVRDTG+G+ +
Sbjct: 875 DSLVGDAVRLRQILLNLIGNAIKFTAQG-EVTVAFALAEQHADTLTLACRVRDTGIGIPD 933

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
               +    F Q   S   R  GTGLGL + K +V    G+  + S P +G
Sbjct: 934 AAQAQLFTAFTQADGSTTRRFGGTGLGLAIVKQLVQLMGGEVGLVSAPGQG 984



 Score = 77.8 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 32/383 (8%), Positives = 81/383 (21%), Gaps = 27/383 (7%)

Query: 94  YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPI 152
                +    +  G     ++G    D       D    H  + L+        +     
Sbjct: 380 RFTRWNRAAEELTGFSRDLILGRTGHDFFRKEEADRFTLHDREALRSGRLIEVASEEIHT 439

Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212
           +   + +      LP+           G  I       +   ++    ++K+  L E  +
Sbjct: 440 QHRGVRLLRT-KKLPVMDEQGRPRFLLG--IAEDITDRSAHESILHESEEKYRELFESSR 496

Query: 213 GHS-----------SVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
                         +       +F  +       +     S       ++ ++K  K   
Sbjct: 497 DAIMILASPNWNFTACNPATVQLFGARDAEHFTSLGPWDVSPEHQPDGEESMVKAPKMIG 556

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGT--LQNNSKESFEYLSHRNHPSLSAYFDEGE 319
           +  +E S   +     +    +          L+  +                A      
Sbjct: 557 MALQEGSHSFEWLHKRVGGPAFLASVQLTRITLKGTTGLQATVRDITEQRRSEATLQAYS 616

Query: 320 NLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIE-IAGGLSTLLDAPKLSD 377
                 +D            G +   NP+   L  Y + + +     G+   LD      
Sbjct: 617 TFQKAMLDNAGHAIISCKPDGMIQVFNPAAEALLGYSADELVGKQTPGIFHDLDEVVARA 676

Query: 378 NNAIKPVMLYRSDRTCIAAS--------ARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
                 +         +                          +                
Sbjct: 677 RQFSAELGTTIEPGFDVFVEKCRRNLPNEHEWAYVCKDGTRKTVLLNVTALREADGRITG 736

Query: 430 QNGIEPEDVDTRINKRKMEIEVM 452
             GI  +    ++  +++     
Sbjct: 737 YLGIATDITPLKLTAQELVSAKE 759



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/174 (14%), Positives = 58/174 (33%), Gaps = 17/174 (9%)

Query: 434 EPEDVDTRINKRKM--------EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
             +   ++  +R++          E   L +IL +  +G+ I++ +  IL  N     LF
Sbjct: 20  ATDSGHSQTERRELPPSNTTTSLDEGRALDAILCSLDEGLCIVDAQWHILRLNPQAEILF 79

Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEI-----LSLDLRQTLEKITLGSTKEEKLLS 540
           G P  D+  +P    +        +  L        L   L    +   L    + +L  
Sbjct: 80  GAPAHDLKGRPAYQLIAPGPEEFRHECLVTDSSIPPLQSGLPYRTDNGFLLRQ-DGQLTP 138

Query: 541 LRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
           + + I  +          LT  D++  K+ ++       +  +  +      + 
Sbjct: 139 ISLTITPMSHDGVVSGAVLTFRDLTTQKEAESHQVENSALLRRLQTGMVGLASN 192



 Score = 45.4 bits (106), Expect = 0.043,   Method: Composition-based stats.
 Identities = 26/234 (11%), Positives = 63/234 (26%), Gaps = 27/234 (11%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH----------------IDPN-NHI 133
             G ++  +      +G  A +++G +   +   L                 I+P  +  
Sbjct: 635 PDGMIQVFNPAAEALLGYSADELVGKQTPGIFHDLDEVVARARQFSAELGTTIEPGFDVF 694

Query: 134 GDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193
            +  +R      +      +GT     + L    +   +   +G+ G  I          
Sbjct: 695 VEKCRRNLPNEHEWAYVCKDGT--RKTVLLNVTALREADGRITGYLG--IATDITPLKLT 750

Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253
                   +     +  K    +    +         P +  +      L+   + K   
Sbjct: 751 AQELVSAKEAAEAANVAKSRFLANMSHEIRT------PLNGVLGMTELLLSTSLSAKQQS 804

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
           L         +    + +  DF  I   +   +Q    L+   +E+ E  +   
Sbjct: 805 LLETVRRSGVALLEVINDILDFSKIEAGKLELEQVEFGLRQVVEEAVELFAGSA 858


>gi|307592311|ref|YP_003899902.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306985956|gb|ADN17836.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 1403

 Score =  362 bits (929), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 113/649 (17%), Positives = 233/649 (35%), Gaps = 43/649 (6%)

Query: 183  IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS 242
            I   N    D          +   + +      ++     D+       P L     + S
Sbjct: 632  IADDNADMRDYLKRLLSQQYEVEAVVDGLTALKAIHSCHPDLVLTDVMMPGLDGFELLKS 691

Query: 243  LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302
            L    + +   +         + E S  E  +    +             +  +     Y
Sbjct: 692  LRADLSTQHIPIILLSAR---AGEESRVEGLEAGADDYLIKPFSARELLARVEATLKLSY 748

Query: 303  L---SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVD 358
            L   + R    L A            + +    F V        + N   + +T   + +
Sbjct: 749  LRQEATRREQGLRAQAQAARVRLENVLAQINEQFIVLDQQWRYSFINDQVIQVTGKSNEE 808

Query: 359  DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI-QWNRENSLAMTFIP 417
             +     +  L   P L ++          +++T +          +W            
Sbjct: 809  LLGHN--IWDLF--PDLVNSPFYTECHRAVAEQTVVQVEFFYWPWQRWFENRIY------ 858

Query: 418  FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
                   P       +  +    +  ++++     +   + +     + + +  G     
Sbjct: 859  -------PFAEGVTILVSDISARKQAEKELRESEERFRQMADNAPVMVWVTDPTGYCTYL 911

Query: 478  NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
            +++  +  G   E  L   +   +         +    + +   ++           + +
Sbjct: 912  SKSWYEFSGQNEETGLGFGWLDAVHPEDSEDSRNIF--LAANKCQEAFRLEYRLRRFDGE 969

Query: 538  LLSLRIIIKK----LPFSSCYSLTMHDISEWKQEKNKLSH-------AKKIAEKESSHKS 586
                  +             Y  ++ DISE K  + +          A+  AEK +  K 
Sbjct: 970  YRWALDVGSPWFGLEGEFKGYIGSVIDISERKAAEVERDRLLQREQAARTEAEKANRIKD 1029

Query: 587  DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
            +FLA +SHE+R+PL  I+G++++++ ++   L    + +  + I+R+  L   ++ DLLD
Sbjct: 1030 EFLAVLSHELRSPLNPILGWAKLLQTKK---LDGATFKQALSTIERNAQLQAQLIEDLLD 1086

Query: 647  ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706
            +S+I  GK++L+  PV+L   +  +I  V L AN K I I+T+    + +IL D   ++Q
Sbjct: 1087 VSRILQGKISLNPIPVNLASIIRHSIETVYLAANAKSIDIQTTLDETVGQILGDPARLQQ 1146

Query: 707  IALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
            I  N+LSNA+ FT +GG++ +       +   + V DTG G+T+  L      F Q  ++
Sbjct: 1147 IVWNLLSNAVKFTSTGGRVEVLLESV-GQSAQITVSDTGKGITSEFLPYVFDYFRQADST 1205

Query: 767  QQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFPLYDTS 814
               +  G GLGL + + +V+ + G     S    +G    + FPL  +S
Sbjct: 1206 TTRKFGGLGLGLAIVRHLVELHGGTVGAESPGENQGATFWVKFPLITSS 1254



 Score =  267 bits (682), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 106/550 (19%), Positives = 191/550 (34%), Gaps = 51/550 (9%)

Query: 315 FDEGENLTPETVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
           + +        +       FV+    L    N ++  +   K    +             
Sbjct: 21  WPQSLKTAVRIMLTSRQAMFVWWGEELINLYNDAYKAIVGGKHPLALGQPASS----VWR 76

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
           ++ D    +      ++      +  L   +         TF      N           
Sbjct: 77  EIWDQVGPRAASALLNNEGTYDEALLLIMERNGYSEETYYTFSYSPVPNDEGGTGGIICA 136

Query: 434 EPEDVDTRINKR------KMEIEVMQLCSI----------LEATS-----DGIAIINRE- 471
             +D    I +R      ++        +           LE+         I +I+RE 
Sbjct: 137 NTDDTGRIIGERQLALLRELAARTADARTFDEACRVSAKCLESNPYDLPFAMIYLIDREK 196

Query: 472 GIILST--------NRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLTEILSLDLR 522
             ++          N A         + +   K      +    S +  +   + S   +
Sbjct: 197 HEVVLAGTCGIDIDNVAAPPKVALQSDSVWPFKKVITENKACLVSNLESFFENLPSGAWQ 256

Query: 523 QTLEKITL------GSTKEEKLLSLRIIIKKLPFSSC---YSLTMHDISEWK---QEKNK 570
           +T  +  +      G T +  LL + +   +L          L    IS      Q   +
Sbjct: 257 RTPHQAVVVPIASSGQTGKAGLLVVGLNPFRLFDDDYRRFIDLVAAQISASIANAQAYEE 316

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
                +   +    K+ F + VSHE RTPLT ++G  E +   +  PLG P   E    +
Sbjct: 317 ERKRAEALAELDRAKTVFFSNVSHEFRTPLTLMLGPIEDVLTDKDEPLG-PSQQERIEIV 375

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
            R+G  +L +VN LLD S+IE+G++   +E   L    +E  S+ +       + +  + 
Sbjct: 376 QRNGLRLLKLVNTLLDFSRIEAGRVEAVYEATDLSVFTTELASVFRSTIERAGMRLMVNC 435

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
                 +  D    ++I LN+LSNA  FT +G +I +S     +  V L V DTG+G+  
Sbjct: 436 PPLPEPVYVDREMWEKIVLNLLSNAFKFTLNG-EISVSLEWVKH-SVKLSVNDTGIGIPE 493

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            E+    + F ++  +Q    EG+G+GL L + +V  + G   + S    GT   I  P 
Sbjct: 494 AEIPLLFERFHRVKGAQGRSFEGSGIGLSLVQELVKLHQGSIDVVSVEGLGTCFTIFIPT 553

Query: 811 YDTSHPHDCI 820
                P + I
Sbjct: 554 GTAHLPQERI 563



 Score = 68.1 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 56/178 (31%), Gaps = 5/178 (2%)

Query: 55   TDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI 114
            +D +    +     +SE  F        V   W  D  GY   +S+   +  G      +
Sbjct: 869  SDISARKQAEKELRESEERFRQMADNAPV-MVWVTDPTGYCTYLSKSWYEFSGQNEETGL 927

Query: 115  GMRLCDVSDILHI-DPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNR 173
            G    D        D  N      K Q  +  +  L   +G   Y        P +    
Sbjct: 928  GFGWLDAVHPEDSEDSRNIFLAANKCQEAFRLEYRLRRFDGE--YRWALDVGSPWFGLEG 985

Query: 174  EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231
            EF G+ G  ++ ++          + L ++ +   E +K +   ++    +  +   P
Sbjct: 986  EFKGYIG-SVIDISERKAAEVERDRLLQREQAARTEAEKANRIKDEFLAVLSHELRSP 1042



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 56/240 (23%), Gaps = 20/240 (8%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147
            +D       I++++ +  G    +++G  + D+   L   P        +  Q     + 
Sbjct: 785  LDQQWRYSFINDQVIQVTGKSNEELLGHNIWDLFPDLVNSPFYTECHRAVAEQTVVQVEF 844

Query: 148  TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI-VHVNRVDNDPRALGKRLDKKFSH 206
              WP          +    P            G  I V             +  +++F  
Sbjct: 845  FYWP-----WQRWFENRIYPF---------AEGVTILVSDISARKQAEKELRESEERFRQ 890

Query: 207  LHEIKKGHSSVEKEKY--DIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
            + +       V          S+       + +          A   +  +  +   L +
Sbjct: 891  MADNAPVMVWVTDPTGYCTYLSKSWYEFSGQNEETGLGFGWLDAVHPEDSEDSRNIFLAA 950

Query: 265  E--ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
               + +   +      +                  E   Y+      S     +   +  
Sbjct: 951  NKCQEAFRLEYRLRRFDGEYRWALDVGSPWFGLEGEFKGYIGSVIDISERKAAEVERDRL 1010



 Score = 44.2 bits (103), Expect = 0.085,   Method: Composition-based stats.
 Identities = 41/406 (10%), Positives = 84/406 (20%), Gaps = 41/406 (10%)

Query: 80  PRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR 139
            R   F W       +   ++     +G      +G     V   +           L  
Sbjct: 35  SRQAMFVWW--GEELINLYNDAYKAIVGGKHPLALGQPASSVWREIWDQVGPRAASALLN 92

Query: 140 QNTWYGKTTLW--PIEGTNLYVPIDLAALPI--------------YSRNREFSGFRGFGI 183
               Y +  L      G +       +  P+                      G R   +
Sbjct: 93  NEGTYDEALLLIMERNGYSEETYYTFSYSPVPNDEGGTGGIICANTDDTGRIIGERQLAL 152

Query: 184 VHVNRVDNDPRALGKR--------LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR 235
           +                       L+     L          EK +  +           
Sbjct: 153 LRELAARTADARTFDEACRVSAKCLESNPYDLPFAMIYLIDREKHEVVLAGTCGIDIDNV 212

Query: 236 MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN 295
                 +L          + TE    L S   S  E          +   +     + ++
Sbjct: 213 AAPPKVALQSDSVWPFKKVITENKACLVSNLESFFENLPSGA--WQRTPHQAVVVPIASS 270

Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYK 355
            +     L          + D+          +               AN       + K
Sbjct: 271 GQTGKAGLLVVGLNPFRLFDDDYRRFIDLVAAQISASI----------ANAQAYEE-ERK 319

Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
             + +       T+  +    +      +ML   +         L   Q   E    +  
Sbjct: 320 RAEALAELDRAKTVFFSNVSHEFRTPLTLMLGPIEDVLTDKDEPLGPSQQ--ERIEIVQR 377

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
                       +  + IE   V+       + +   +L S+  +T
Sbjct: 378 NGLRLLKLVNTLLDFSRIEAGRVEAVYEATDLSVFTTELASVFRST 423


>gi|117923957|ref|YP_864574.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117607713|gb|ABK43168.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1064

 Score =  362 bits (929), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 101/568 (17%), Positives = 213/568 (37%), Gaps = 27/568 (4%)

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
                +               +   K      +                   +   E + 
Sbjct: 229 RRDVGQPLEAISHAVRKFGQTRELPKFEEQPGEFQILLHTLTDMASTVVLRESEVQERQL 288

Query: 321 LTPETVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLS--TLLDAPKLSD 377
                +D      +      +    NP+ + L  Y S  ++      +     D      
Sbjct: 289 QIELLLDSAGEGIYAIDTQGICIQCNPAAVALLGYASSTELVGRDIHTLCHRADEQGTHM 348

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
            ++  P     +             +Q    +   +        +Q    +    +  + 
Sbjct: 349 PHSDCPGCKVIASGE--PVHLAQEYLQRQDGSVFPVEMR-IHPMHQGGRVVGAVVLFDDI 405

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAII--NREGIILSTNRAVSKLFGYPVE---DI 492
                 ++K+ +      ++++A          +    + S    +++L GY  +   + 
Sbjct: 406 SRRLDAEQKLRLSERHFRTLVQALPGTFYKCAPDPLCTMYSLGDNIAELTGYAADSFIEN 465

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
             + F+  +       +   L + L+  +          +  + K   +    + +   +
Sbjct: 466 HERSFSSVVHAEDWPRVREALDQALAQGV--VYHLEYRVNHTDGKPRWVMDRGQAVYDEA 523

Query: 553 C----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                    + D++E KQ + +L  A++ A+  +  KS+FLA +SHEIRTPL AI+G  +
Sbjct: 524 GRAEVLYGVLLDMTERKQYEQRLESARQQADAGNRAKSEFLAVMSHEIRTPLNAIMGMGD 583

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
           ++      P+       Y +    +G  +++++ D+LD+S+IE G++ L   P  ++  V
Sbjct: 584 LLGETALSPV----QRHYLSISQHAGETLVELIEDILDLSRIEVGELELEPAPFEVEALV 639

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQ--- 724
            E   +V   A++K +++       +P +L  D + ++QI  N+L NA+ FT  G     
Sbjct: 640 EEVCEVVTSSAHDKGLILLMRIDPLLPPVLIGDKKRLRQILFNLLFNAVKFTKHGEVMLD 699

Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
           I      ++   V+L+VRDTGVGM    +E+  +PF Q  ++   +  G+GLGL + K +
Sbjct: 700 IRHDAARSAAGAVLLQVRDTGVGMAEEMIERVFEPFTQGDSTITRQYGGSGLGLTICKRL 759

Query: 785 VDANMGKFYIFSTPAKGTLIEI--IFPL 810
           V    G   + S   +GT   +  + P+
Sbjct: 760 VSKMGGDIQLESALGRGTTATVQLVLPV 787



 Score = 83.5 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/235 (11%), Positives = 72/235 (30%), Gaps = 15/235 (6%)

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
           +     L   L    +  +         R D       A  H ++   +      F    
Sbjct: 201 LVKQQFLENSLIHLLIFGSAFFAISFFLRRDVGQ-PLEAISHAVRKFGQTRELPKFEEQP 259

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
              Q   +   +      +     + +++   +Q+  +L++  +GI  I+ +GI +  N 
Sbjct: 260 GEFQILLHTLTDMASTVVL----RESEVQERQLQIELLLDSAGEGIYAIDTQGICIQCNP 315

Query: 480 AVSKLFGY-PVEDILRKPFTVFLEQNTPSVMNHYLTE-----ILSLDLRQTLEKITLGST 533
           A   L GY    +++ +       +      +   ++     +++      L +  L   
Sbjct: 316 AAVALLGYASSTELVGRDIHTLCHRADEQGTHMPHSDCPGCKVIASGEPVHLAQEYLQRQ 375

Query: 534 KEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
            +  +  + + I  +          +   DIS     + KL  +++         
Sbjct: 376 -DGSVFPVEMRIHPMHQGGRVVGAVVLFDDISRRLDAEQKLRLSERHFRTLVQAL 429



 Score = 55.0 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/260 (7%), Positives = 68/260 (26%), Gaps = 22/260 (8%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAF-KMIGMRLCDVSDILHIDP------NNHIGDLLK 138
            + ID  G   + +      +G  +  +++G  +  +              +     ++ 
Sbjct: 301 IYAIDTQGICIQCNPAAVALLGYASSTELVGRDIHTLCHRADEQGTHMPHSDCPGCKVIA 360

Query: 139 RQNTW-YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG 197
                   +  L   +G+    P+++   P++ +     G     +        D     
Sbjct: 361 SGEPVHLAQEYLQRQDGS--VFPVEMRIHPMH-QGGRVVGA--VVLFDDISRRLDAEQKL 415

Query: 198 KRLDKKFSHLHEIKKGHS---------SVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA 248
           +  ++ F  L +   G           ++     +I           ++N   S +    
Sbjct: 416 RLSERHFRTLVQALPGTFYKCAPDPLCTMYSLGDNIAELTGYAADSFIENHERSFSSVVH 475

Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
            +D     E      ++      +   +  +            + + +  +         
Sbjct: 476 AEDWPRVREALDQALAQGVVYHLEYRVNHTDGKPRWVMDRGQAVYDEAGRAEVLYGVLLD 535

Query: 309 PSLSAYFDEGENLTPETVDK 328
            +    +++      +  D 
Sbjct: 536 MTERKQYEQRLESARQQADA 555


>gi|317486965|ref|ZP_07945775.1| response regulator receiver domain-containing protein [Bilophila
           wadsworthia 3_1_6]
 gi|316921840|gb|EFV43116.1| response regulator receiver domain-containing protein [Bilophila
           wadsworthia 3_1_6]
          Length = 1084

 Score =  362 bits (929), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 122/635 (19%), Positives = 229/635 (36%), Gaps = 34/635 (5%)

Query: 184 VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS-- 241
           +          AL     ++   + EI    + V +         +     R+  ++   
Sbjct: 178 IRAVEARTTREALEMLERRQVDAVFEILDAGTHVIRLNNIPQVIVAAVTPYRLPIRIGVR 237

Query: 242 -SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF 300
               +  A  D  L            +     +    I  + + +      L        
Sbjct: 238 KDWPQLAAILDKALGGIPPTASQDFHNRWFNVQRSAEIAWSLFWEMTATVILIALGIVLT 297

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDD 359
                R            E +    ++  P    ++         N     +  +     
Sbjct: 298 ALFMLRKVRKEVLVRRNTEAMLNSLLENLPAAVCLFDSSCRCRKLNAMCASIFGFTEQTA 357

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
           ++   G            +  +   +L     +             + + +   T     
Sbjct: 358 LDGVPGTD------FPVASGVLSEKVLRDVLESGEPRMFPHSRTDADGKTAYYQT-TLVP 410

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
              +  +      +  +    ++ ++K+  ++     +L+ +  G+ I   EG I  +N 
Sbjct: 411 LRKEDEKTDAVLCLSADMTTQKLLEKKLSEQLAFAQKLLKTSPIGVLIA-VEGFIRYSNP 469

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
              +L     E  + + +                  +L        +        + +  
Sbjct: 470 RARELMDLREEMDVARVYPQL----------REAAAMLPTLEDTLTDIALKSRDAQGQPH 519

Query: 540 SLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
            LR+   +  +         + D ++ K+ + +L  AK+ AE  S  KSDFLA +SHEIR
Sbjct: 520 HLRVTYTRTEYEGAPGIICWLVDDTQNKELEKQLVLAKEEAETASRAKSDFLANMSHEIR 579

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TP+  IIG + +            R  +Y   I  S N +L IVND+LD SKIE+GK+ +
Sbjct: 580 TPMNGIIGMTHLTLQTELTS----RQRDYLTQISTSANTLLRIVNDILDFSKIEAGKLEM 635

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAI 716
                 L++ + E  S+  L A EK + + +  + ++P +L  D   + QI LN++ NAI
Sbjct: 636 EHADFQLEQVLEEVASIADLSAAEKGLELLSRISPDVPPVLEGDALRLSQILLNLVGNAI 695

Query: 717 HFTPSGGQIIISTTHTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
            FT SG  +++S T   +E     +   V DTG+GMT+ ++    + F Q  NS   R  
Sbjct: 696 KFTQSG-HVLVSVTQERHEGSKTRLRFSVSDTGIGMTSEQIGNLFESFTQADNSTTRRYG 754

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           GTGLGL + K +V+   G+ ++ STP  G+     
Sbjct: 755 GTGLGLAICKRLVNLMGGEIHVRSTPGHGSDFIFT 789


>gi|91773017|ref|YP_565709.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanococcoides burtonii DSM 6242]
 gi|91712032|gb|ABE51959.1| HATPase domain-containing multisensor signal transduction histidine
           kinase [Methanococcoides burtonii DSM 6242]
          Length = 631

 Score =  362 bits (929), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 106/505 (20%), Positives = 203/505 (40%), Gaps = 23/505 (4%)

Query: 318 GENLTPETVDKCPIPFFVYSHGN---LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
            +    E     P+  F+++      + + + +      Y   +D      +   +  P 
Sbjct: 136 SKKELEEIYKNSPVVAFLWTAEKDWPVEFVSDNITQ-FGYTP-EDFTSGNMIYGDIVHPD 193

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
             D        L    R   +   R+ T     E    +        ++        GI 
Sbjct: 194 DLDFVRNDITRLEIEGRQFFSKEYRILT---RAEEPRWVAERSLMVPDEDGRPSYYQGII 250

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
            +  D ++ ++ +     +   I E +  GI   +++GII   N   + + G  ++ I+ 
Sbjct: 251 IDVTDRKLAEQALLETEKRFRLIFENSPLGIFTFDKDGIITHCNTNFAMIMGASMDKIIG 310

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL--SLRIIIKKLPFSS 552
                 L       M   +  + +        K     + +   +       I +     
Sbjct: 311 LNI---LRSIKDKKMTDAVKPVFARKTGHYEGKCVSALSGKVTPIKADYSPNIAEDGSIL 367

Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKES-------SHKSDFLARVSHEIRTPLTAIIG 605
                + DI+   + +  L    +     +         K  FL+ VSHE++TPLT+I G
Sbjct: 368 GGIGIIEDITTRIESEEALKKYAEELAIANEELKSLDQMKDRFLSNVSHELKTPLTSIKG 427

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
           ++E+I ++  G L   +  E    + R+ N +  +V+ LL IS+ +SG +   FEPVS+ 
Sbjct: 428 YTELIYDESLGTLS-EQQKEVEKTVLRNANRLKRLVDSLLYISRAQSGNVQYLFEPVSIV 486

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725
           E V   +  +++   EK++ +     N+IP I  D   +  +  N++ N+I FTP GG +
Sbjct: 487 EIVEMTLQDLKIQIEEKKLAVEKDIPNDIPTINGDRDKLTDMLTNMVDNSIKFTPEGGSL 546

Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
             +     +E + + ++D G+G+    +    + F QI  S+  +  GTGLGL + K +V
Sbjct: 547 KFTIK-EEDEFIHIVLKDNGIGIPPDMIPMLFQRFYQIDASRTRKYGGTGLGLYICKEIV 605

Query: 786 DANMGKFYIFST-PAKGTLIEIIFP 809
            A+ GK ++ S    KGT + I  P
Sbjct: 606 TAHKGKIWVESKGENKGTEMHIQLP 630



 Score = 68.1 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 40/391 (10%), Positives = 108/391 (27%), Gaps = 33/391 (8%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI--DPNNHIGDL-LKRQNT 142
            W +DA+      S+ +    G    ++IG  + D  ++  +      H  +L L+ ++ 
Sbjct: 16  LWAVDANNKFIYFSKGMEDITGISEERIIGKDIKDFMEVAQLCVGDETHFTELSLQAKDK 75

Query: 143 WYGKTTLWPIEGTNLYVPIDLAAL--PIYSRNREFSGFRGFGIVHVNRVDNDPRALG--- 197
                       T       L+    P+ + + +++G      V                
Sbjct: 76  LKPTRYHSLSFLTPEGNLNLLSGHIIPMLNGSDKYTGL--ICTVESVSEQKIREKTFKDM 133

Query: 198 ----KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL----TEYYAH 249
               K L++ + +   +    ++ +    +  S          ++  S         +  
Sbjct: 134 ITSKKELEEIYKNSPVVAFLWTAEKDWPVEFVSDNITQFGYTPEDFTSGNMIYGDIVHPD 193

Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES----FEYLSH 305
             D ++ +   L         ++    T         +    + +            +  
Sbjct: 194 DLDFVRNDITRLEIEGRQFFSKEYRILTRAEEPRWVAERSLMVPDEDGRPSYYQGIIIDV 253

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAG 364
            +         E E       +  P+  F +   G + + N +F ++        ++   
Sbjct: 254 TDRKLAEQALLETEKRFRLIFENSPLGIFTFDKDGIITHCNTNFAMIMGAS----MDKII 309

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
           GL+ L         +A+KPV   ++             +         +         + 
Sbjct: 310 GLNILRSIKDKKMTDAVKPVFARKT------GHYEGKCVSALSGKVTPIKADYSPNIAED 363

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
              +   GI  +      ++  ++    +L 
Sbjct: 364 GSILGGIGIIEDITTRIESEEALKKYAEELA 394


>gi|94263693|ref|ZP_01287501.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93455892|gb|EAT06051.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 1095

 Score =  362 bits (929), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 98/449 (21%), Positives = 190/449 (42%), Gaps = 35/449 (7%)

Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV----DTRINKR 445
                     +  +  + +    M        +   E++       +      + +  + 
Sbjct: 116 QGHARVIREIVVPVIRDNKVVAIMGLGNKPV-DYDDEDLEVISFFADITWNLVEQKRTQE 174

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            ++    +L +I +A  D I +++  GI+   N A   + GY  ++ + +     +  + 
Sbjct: 175 ALQNSQARLKTITDAAQDAIIMMDTRGIVSFWNPAAETILGYTRDEAMGRDLHELIMPSR 234

Query: 506 -PSVMNHYLTEILS--LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY--SLTMHD 560
                     E           +       TK+ + + + + +  +     +     + D
Sbjct: 235 YRKNFQAAFPEFKKTGHGNAVGMTTELYAQTKDGREIPVELALSSVLIDDQWNAVGVVRD 294

Query: 561 ISEWKQEKNKLSHA--------------KKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
           I+E K+ + +L                 +  AE+ +  KS+FLA +SHEIRTP+ AIIG 
Sbjct: 295 ITEKKEAQEELQRHGRNLERKNVELNAARLEAEEATRAKSEFLANMSHEIRTPMNAIIGL 354

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
           S +          N +  +Y   +  S   +L I+ND+LD+SK+E+GK+ +   P +L +
Sbjct: 355 SYLCLQTDL----NNKQHDYLTKVHSSAQSLLGIINDILDLSKVEAGKLEIEHIPFALQD 410

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-- 723
                 S++ + A EK++      A +IP  ++ D   + QI +N+  NAI FT  G   
Sbjct: 411 VTDHLTSIIHVKAQEKQLHFHVETAIDIPPFLVGDPLRLGQILINLCGNAIKFTSQGQVM 470

Query: 724 -QIIISTTHTSNEE---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
            QI+++      E+   +   ++DTG GMT  ++ +  + F Q  +S   +  GTGLGL 
Sbjct: 471 LQIVLAEQTEQTEQTARIHFAIKDTGTGMTPEQISRLFQAFSQADSSTTRQFGGTGLGLV 530

Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           ++K +V+   G+  + S P KG+      
Sbjct: 531 ISKQLVETMGGEISVESEPGKGSTFMFTI 559



 Score = 48.1 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/139 (10%), Positives = 39/139 (28%), Gaps = 8/139 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL----HIDPNNHIGDLLKRQNTWY 144
           +D  G +   +      +G    + +G  L ++        +              N   
Sbjct: 197 MDTRGIVSFWNPAAETILGYTRDEAMGRDLHELIMPSRYRKNFQAAFPEFKKTGHGNAVG 256

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
             T L+        +P++LA   +   ++    +   G+V       + +   +R  +  
Sbjct: 257 MTTELYAQTKDGREIPVELALSSVLIDDQ----WNAVGVVRDITEKKEAQEELQRHGRNL 312

Query: 205 SHLHEIKKGHSSVEKEKYD 223
              +          +E   
Sbjct: 313 ERKNVELNAARLEAEEATR 331


>gi|320101873|ref|YP_004177464.1| multi-sensor hybrid histidine kinase [Isosphaera pallida ATCC
           43644]
 gi|319749155|gb|ADV60915.1| multi-sensor hybrid histidine kinase [Isosphaera pallida ATCC
           43644]
          Length = 1021

 Score =  362 bits (928), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 102/603 (16%), Positives = 211/603 (34%), Gaps = 28/603 (4%)

Query: 224 IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY 283
              ++S PP  R         +  A    + +  ++    +             I+L   
Sbjct: 183 TPGERSAPPIGRPWRSWFRGDDLAAIDQAIRQARQWGRAIAAVRLARSDGSEREIDLVVI 242

Query: 284 TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF------VYS 337
                       +        H       +  +  ++L     D  P             
Sbjct: 243 ADHDPNDRFG--AGLFLVLKDHTELRDTQSKLERRDHLLRTVGDHLPETALFQVESSPQG 300

Query: 338 HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397
              L +       +        +         L      ++ A     L  S  T     
Sbjct: 301 QFRLTHLTQGVETILGLNPDQCLNDYQC----LLEKIHPEDRAGFLQALRSSALTLNDVR 356

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
             L     + +++L   ++              +G   +    +I ++++     +L S 
Sbjct: 357 CELRVY--DSQSALHWVWVHITARRSADGTTLWDGFLFDLTSRKIAEQELRAANQRLESF 414

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
           L+       I +    +L  N    ++ G   +    +       +            +L
Sbjct: 415 LDHAPYLAWITDEHERLLYLNHPYRQILGLRDDSPAGRTLAEVFGEEKAKACRAANRHLL 474

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSH 573
             +           +  EE++            S       + T  DI++ ++ + +L  
Sbjct: 475 ETNQPFESINTITTADGEERVYLSHKFPLPPEASGNGPRLVAGTSLDITQRQRLEQELQR 534

Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
           A+  A + S  KS FLA +SHEIRTP+ ++IG  +++                      +
Sbjct: 535 ARAEAIEASRVKSQFLANLSHEIRTPIASVIGLIDLLSTSELSEAEREETTSLLRL---A 591

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF--- 690
              +  +VND+LD+SKIE+G+M L + P    + +  A++L+ + A  + I +       
Sbjct: 592 AEHLSSMVNDVLDLSKIEAGRMTLEWSPTDPCQVIRAALNLLAIQARARGIELVMEPLDQ 651

Query: 691 -ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT---HTSNEEVILRVRDTGV 746
              + P I  D   ++QI +N++SNAI F+  GG++ +         +  +++ V D G+
Sbjct: 652 SEPSPPSICTDPTRLRQILVNLISNAIKFSERGGRVTVRYGPRIEEDSRWLVIDVVDQGI 711

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+   ++E+   P+ Q   + Q R  GTGLGL +++ + +   G+ ++ S    G+   +
Sbjct: 712 GIAPDQIERLFTPYTQADETSQRRHGGTGLGLAISRRLAEQLGGELHVRSQVGVGSTFTL 771

Query: 807 IFP 809
             P
Sbjct: 772 TLP 774



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/404 (8%), Positives = 95/404 (23%), Gaps = 32/404 (7%)

Query: 69  DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTI--GNYAFKMIGMRLCDVSDILH 126
           ++    VF      + +    D  G L   + E       G  +   IG           
Sbjct: 148 NARIDLVFSVTTDPIAYV---DDSGALVTANAEFLVLTTPGERSAPPIGRPWRSWFRGDD 204

Query: 127 IDPNNHIGDLLKRQNTWYGKTTLWPIEGTNL-YVPIDLAALPIYSRNREFSGFRGFGIVH 185
           +     I   +++   W        +  ++     IDL  +  +  N  F G   F ++ 
Sbjct: 205 L---AAIDQAIRQARQWGRAIAAVRLARSDGSEREIDLVVIADHDPNDRF-GAGLFLVLK 260

Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE 245
            +    D ++  +R D     + +     +  + E       +       ++  +    +
Sbjct: 261 DHTELRDTQSKLERRDHLLRTVGDHLPETALFQVESSPQGQFRLTHLTQGVETILGLNPD 320

Query: 246 YYAHK-----------DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294
              +            D     +         + +  +   +      +    +    ++
Sbjct: 321 QCLNDYQCLLEKIHPEDRAGFLQALRSSALTLNDVRCELRVYDSQSALHWVWVHITARRS 380

Query: 295 NSKES---FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLL 350
               +          +                  +D  P   ++      L Y N  +  
Sbjct: 381 ADGTTLWDGFLFDLTSRKIAEQELRAANQRLESFLDHAPYLAWITDEHERLLYLNHPYRQ 440

Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
           +        +         L      +              T     +       + E  
Sbjct: 441 ILG------LRDDSPAGRTLAEVFGEEKAKACRAANRHLLETNQPFESINTITTADGEER 494

Query: 411 LAMTF-IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
           + ++   P              G   +    +  +++++    +
Sbjct: 495 VYLSHKFPLPPEASGNGPRLVAGTSLDITQRQRLEQELQRARAE 538



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/137 (10%), Positives = 46/137 (33%), Gaps = 10/137 (7%)

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF--GYPVEDILRKPFTVFLEQNTPS 507
              ++  +   T+D IA ++  G +++ N     L   G      + +P+  +   +  +
Sbjct: 147 RNARIDLVFSVTTDPIAYVDDSGALVTANAEFLVLTTPGERSAPPIGRPWRSWFRGDDLA 206

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF-----SSCYSLTMHDIS 562
            ++  + +                +  +     + +++           +   L + D +
Sbjct: 207 AIDQAIRQARQWGRAIAA---VRLARSDGSEREIDLVVIADHDPNDRFGAGLFLVLKDHT 263

Query: 563 EWKQEKNKLSHAKKIAE 579
           E +  ++KL     +  
Sbjct: 264 ELRDTQSKLERRDHLLR 280



 Score = 46.6 bits (109), Expect = 0.019,   Method: Composition-based stats.
 Identities = 37/347 (10%), Positives = 85/347 (24%), Gaps = 31/347 (8%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI-GDLLKRQNTWYG 145
           W  D H  L  ++    + +G       G  L +V               LL+    +  
Sbjct: 423 WITDEHERLLYLNHPYRQILGLRDDSPAGRTLAEVFGEEKAKACRAANRHLLETNQPFES 482

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF-GIVHVNRVDNDPRALGKRLDKKF 204
             T+   +G      + L+           +G R   G               +R   + 
Sbjct: 483 INTITTADGEE---RVYLSHKFPLPPEASGNGPRLVAGTSLDITQRQRLEQELQRARAEA 539

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
                +K    +    +          P   +   +  L+     + +  +T     L +
Sbjct: 540 IEASRVKSQFLANLSHEIR-------TPIASVIGLIDLLSTSELSEAEREETTSLLRLAA 592

Query: 265 EESS--LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
           E  S  + +  D   I   + T +          + +   L+ +          E  + +
Sbjct: 593 EHLSSMVNDVLDLSKIEAGRMTLEWSPTDPCQVIRAALNLLAIQARARGIELVMEPLDQS 652

Query: 323 PE---------------TVDKCPIPF-FVYSHGNL-FYANPSFLLLTKYKSVDDIEIAGG 365
                             V+       F    G +     P     +++  +D ++   G
Sbjct: 653 EPSPPSICTDPTRLRQILVNLISNAIKFSERGGRVTVRYGPRIEEDSRWLVIDVVDQGIG 712

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
           ++        +           R   T +  +      +        
Sbjct: 713 IAPDQIERLFTPYTQADETSQRRHGGTGLGLAISRRLAEQLGGELHV 759


>gi|300866839|ref|ZP_07111516.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
 gi|300335149|emb|CBN56676.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
          Length = 1317

 Score =  362 bits (928), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 140/766 (18%), Positives = 276/766 (36%), Gaps = 96/766 (12%)

Query: 104  KTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNT-----WYGKTTLWPIEGTNLY 158
            + +G    +       D  ++LH +    +   ++   T     +  +  +    G   Y
Sbjct: 346  EILGYLDSEHS-KYPQDRINLLHPEDREKVVQAVQDHLTKKTPFYISEHRIRCKNGD--Y 402

Query: 159  VPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVE 218
              I      ++    +    R  G            A  + L        E      S  
Sbjct: 403  KWILDRGQALWDDAGK--AIRMSGSHTDITERKQAEAELQELTISL----ENAISGISKL 456

Query: 219  KEKYDIFSQQSP---PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDF 275
             +     S             +  +  + +   H DDV K         +   +  +   
Sbjct: 457  DKSGRYLSVNRSYANAAGYEPEEMLGMMWQQTVHPDDVDKLIAAYDQMQQNDKVEVEARG 516

Query: 276  HTINLNQYTKKQYFGTLQNNS-----------KESFEYLSHRNHPSLSAYFDEGENLTPE 324
               + + + K+    ++ +               S  Y   R          + E     
Sbjct: 517  IRKDGSIFYKQLVMISIYDEQHQFIGHHCFMKDVSDAYGELRLRKYAEEALQQSETRFQL 576

Query: 325  TVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
             ++  P   ++    G + YA+ S+L   K  ++D I     +  +  +           
Sbjct: 577  FMNHSPAAAWISDTNGVILYASQSYLKNFKLPTLDIIGK--SIFEIFSSEFAHKILDN-- 632

Query: 384  VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
              +++  +T     A     + +      + +       +    +   G+  +  + +  
Sbjct: 633  --IHKVVQTQQVLEAIELAPRADGTVGQFLVYKF--PLPETSRQILVGGVAIDITERQQT 688

Query: 444  KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            +  +     QL +I+E++ D I   + +G+I S N    ++FGY   +I+ +  T  +  
Sbjct: 689  EAAI----SQLAAIVESSEDAIIGKSLDGVIESWNAGAERMFGYTALEIVGQSITKLIPP 744

Query: 504  NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMH 559
            N        LT I     +      T+   K+  L+++ + I  +       +     + 
Sbjct: 745  NYVDEEAQILTIIRQ--EKSIPHYETVRQRKDGTLVNVSVSISLIKNKKGAIIGASKIVR 802

Query: 560  DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
            DIS+ K+ + +L  A + AE  +  KS FLA +SHE+RTPL AI+GF++V+      P  
Sbjct: 803  DISDRKRREIELWQAMEAAESANLAKSTFLANMSHELRTPLNAILGFTQVMARN---PAL 859

Query: 620  NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
             P   E    I RSG+ +L ++ND+LD+SKIE+G   L      L   +    +++    
Sbjct: 860  TPELKEDLQTIGRSGDYLLSLINDILDLSKIEAGHSTLEETGFDLIALLHSLQNMLAERV 919

Query: 680  NEKRILIRTSFANNIPR-ILADLRSVKQI---------ALNILSNAIHFTPSGGQIIIST 729
            N K++ +    A N+P+ ILAD + ++Q+                   FT  G  I +  
Sbjct: 920  NSKKLQLYFDVAPNLPQFILADSQKLRQVLLNLLSNSL---------KFTDLG-YITLRV 969

Query: 730  THTSNE-------------------------EVILRVRDTGVGMTNYELEKAMKPFGQIP 764
                +                           ++  V DTGVG++  EL+     F Q  
Sbjct: 970  RSEESSLTVRGLEAPEISNLDPTISNVTPKTSLLFEVTDTGVGISPQELDNIFDAFVQT- 1028

Query: 765  NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             + +    GTGLGL +++ +++   G+ ++ STP +G+      P+
Sbjct: 1029 QAGKRAKNGTGLGLTISRKLIEIMGGEIFVNSTPGQGSTFTFTVPV 1074



 Score = 96.6 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 38/376 (10%), Positives = 98/376 (26%), Gaps = 22/376 (5%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
            +D  G    ++       G    +M+GM          +D      D +++ +    + 
Sbjct: 455 KLDKSGRYLSVNRSYANAAGYEPEEMLGMMWQQTVHPDDVDKLIAAYDQMQQNDKVEVEA 514

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF-----GIVHVNRVDNDPRALGKRLDK 202
                +G+  Y  + +  + IY    +F G   F           R+        ++ + 
Sbjct: 515 RGIRKDGSIFYKQLVM--ISIYDEQHQFIGHHCFMKDVSDAYGELRLRKYAEEALQQSET 572

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
           +F          + +      I               +  + +            K   L
Sbjct: 573 RFQLFMNHSPAAAWISDTNGVILYASQSYLKNFKLPTLDIIGKSIFEIFSSEFAHKI--L 630

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTL-----QNNSKESFEYLSHRNHPSLSAYFDE 317
            +    +  Q+    I L           L        +             +     + 
Sbjct: 631 DNIHKVVQTQQVLEAIELAPRADGTVGQFLVYKFPLPETSRQILVGGVAIDITERQQTEA 690

Query: 318 GENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
             +     V+         S  G +   N     +  Y +++ +  +    T L  P   
Sbjct: 691 AISQLAAIVESSEDAIIGKSLDGVIESWNAGAERMFGYTALEIVGQSI---TKLIPPNYV 747

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           D  A + + + R +++                  + ++       N+    +  + I  +
Sbjct: 748 DEEA-QILTIIRQEKSIPHYETVRQR---KDGTLVNVSVSISLIKNKKGAIIGASKIVRD 803

Query: 437 DVDTRINKRKMEIEVM 452
             D +  + ++   + 
Sbjct: 804 ISDRKRREIELWQAME 819



 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/143 (14%), Positives = 45/143 (31%), Gaps = 7/143 (4%)

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY--PVEDIL 493
           E V+ +  +  +     +    L   SDGI   N +   +  +    ++ GY        
Sbjct: 299 EIVERQQIEANLRESEERWQLALRGNSDGIWDWNMQTNEIFYSTRCKEILGYLDSEHSKY 358

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553
            +     L       +   + + L+      +        K      +    + L   + 
Sbjct: 359 PQDRINLLHPEDREKVVQAVQDHLTKKTPFYIS-EHRIRCKNGDYKWILDRGQALWDDAG 417

Query: 554 YSLTM----HDISEWKQEKNKLS 572
            ++ M     DI+E KQ + +L 
Sbjct: 418 KAIRMSGSHTDITERKQAEAELQ 440


>gi|298291978|ref|YP_003693917.1| PAS/PAC sensor hybrid histidine kinase [Starkeya novella DSM 506]
 gi|296928489|gb|ADH89298.1| PAS/PAC sensor hybrid histidine kinase [Starkeya novella DSM 506]
          Length = 786

 Score =  362 bits (928), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 108/509 (21%), Positives = 195/509 (38%), Gaps = 19/509 (3%)

Query: 317 EGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
               L   T++       +Y     L   N  F         + +         +    L
Sbjct: 13  REARLLRATLENMAQGVAMYDAEHRLVTWNQLFREYLDM-PEEFLGSEHTFEDYIRYLAL 71

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
                   +    + R     ++            L +   P               I  
Sbjct: 72  RGEFGEVDIEQTLARRIAQLKTSHRFERIRPDGTVLEVRRDPVPGG-------GFIAIYT 124

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI-ILSTNRAVSKLFGYPVEDILR 494
           +  + +  + K+  +  +  +I  A   G+ I++ +   +L  N +  +L G   +++L 
Sbjct: 125 DITERKQAEMKLREDEERFRAIDAAAPVGLVIVDADDHTVLHLNPSFCELVGKQADEVLG 184

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554
           +P    L           L  I+     +  E   +      +   +  +          
Sbjct: 185 QPLDDVLHD---PANGDALVAIVDARSSERKEFQFIRPDGTTRWTMVSQVPLDFRGEKAV 241

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
             +  DIS+  + + +L  AK+ AE  S  KS FLA +SHE+RTPL AIIG+SE++    
Sbjct: 242 ICSFVDISDRVRAEQQLREAKEAAESASRVKSAFLANMSHELRTPLNAIIGYSEILSEDA 301

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     +  + I  +G  +L ++ND+LD+SKIE+G+M+++ E V L   V E  ++
Sbjct: 302 ADDGNTAMVAD-LDKIQSAGKHLLGLINDILDLSKIEAGRMDVYLEQVFLTRMVDEVKTI 360

Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-- 732
           V     +    +      +I  +  DL  +KQ  +N+LSNA  FT  G  + +  +    
Sbjct: 361 VGPMMQKNANQLVVECPVDIGTLRTDLTKLKQSLINLLSNAAKFTKEG-TVTLRISRDAM 419

Query: 733 SNEE--VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
            +    +   V D+G+GMT  ++ +  + F Q  +S      GTGLGL + K  V    G
Sbjct: 420 PDGSSAIRFDVSDSGIGMTEEQMGRLFQAFTQADSSTTRNFGGTGLGLTITKHFVAMLGG 479

Query: 791 KFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819
              + S   +G+   I  P+     P + 
Sbjct: 480 TIAVASEAGRGSTFTIELPVDAKGLPAEA 508



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/173 (10%), Positives = 47/173 (27%), Gaps = 10/173 (5%)

Query: 54  FTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAH-GYLKEISEELPKTIGNYAFK 112
           +TD  +   +     + E  F        V     +DA    +  ++    + +G  A +
Sbjct: 123 YTDITERKQAEMKLREDEERFRAIDAAAPVGLV-IVDADDHTVLHLNPSFCELVGKQADE 181

Query: 113 MIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172
           ++G  L DV         + +  ++  +++   +      +GT  +  +    L      
Sbjct: 182 VLGQPLDDVLH--DPANGDALVAIVDARSSERKEFQFIRPDGTTRWTMVSQVPLDFRGEK 239

Query: 173 REFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF 225
                F                   +   +       +K    +    +    
Sbjct: 240 AVICSFV------DISDRVRAEQQLREAKEAAESASRVKSAFLANMSHELRTP 286


>gi|283782276|ref|YP_003373031.1| PAS/PAC sensor hybrid histidine kinase [Pirellula staleyi DSM 6068]
 gi|283440729|gb|ADB19171.1| PAS/PAC sensor hybrid histidine kinase [Pirellula staleyi DSM 6068]
          Length = 675

 Score =  362 bits (928), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 113/390 (28%), Positives = 201/390 (51%), Gaps = 12/390 (3%)

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
           EN  Q  +  E  + R  +  +     +  ++ +  +DGI  +N    + + N A  +LF
Sbjct: 117 ENPFQTALAAEIDERRRAEELLWNSQARWRAVFDNAADGIITLNESLQVETYNTAAQRLF 176

Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
           GY  E I+    ++ +           L    +   +      TL    +  +    + +
Sbjct: 177 GYSCEQIVGLQISLLMPGVE-------LDSSNAAAPQAGRRIETLCRRSDGSMFLADVSL 229

Query: 546 KKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
             +P S    Y   + DI+  ++++ +L  AK+ AE  S  K +FLA +SHEIRTP+TAI
Sbjct: 230 GTVPQSKSHGYIAIIRDITRQRRDQQELEEAKRAAESASHAKDEFLANMSHEIRTPITAI 289

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +GFS+++ + +      P + E A  + R+G  +L ++ND+LD+SKIE+G++ +     S
Sbjct: 290 LGFSDLLIHDQRLQNEFPNWFESAQTVYRNGEHLLSLINDVLDLSKIEAGRLLIESIRCS 349

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSG 722
             E V +   L+ L A+EK + +  SF  +IP   + D   +KQ+ +N++ NA+ FTP G
Sbjct: 350 PLEIVRDVCQLMSLKASEKDLTLDVSFRTDIPVTAVTDPTRIKQVLINLVGNAVKFTPRG 409

Query: 723 G-QIIISTTHTSNE-EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
             QI +    + +   + + V DTG+GMT+ ++++  +PF Q   S   R  GTGLGL +
Sbjct: 410 SVQITVDIHSSGHATMLAVEVTDTGIGMTSAQIDRLFQPFTQADASTTRRFGGTGLGLVI 469

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           +K +V+A  G+  + S   +G+   ++ PL
Sbjct: 470 SKRIVEALGGQVSVVSQSGEGSTFRVLLPL 499



 Score = 41.2 bits (95), Expect = 0.85,   Method: Composition-based stats.
 Identities = 11/127 (8%), Positives = 36/127 (28%), Gaps = 10/127 (7%)

Query: 99  SEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLY 158
           +    +  G    +++G+++  +   + +D +N       R+     +T     +G+   
Sbjct: 169 NTAAQRLFGYSCEQIVGLQISLLMPGVELDSSNAAAPQAGRRI----ETLCRRSDGSMFL 224

Query: 159 VPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVE 218
             + L  +P    +          I+         +   +   +        K    +  
Sbjct: 225 ADVSLGTVPQSKSHGYI------AIIRDITRQRRDQQELEEAKRAAESASHAKDEFLANM 278

Query: 219 KEKYDIF 225
             +    
Sbjct: 279 SHEIRTP 285


>gi|157373767|ref|YP_001472367.1| histidine kinase [Shewanella sediminis HAW-EB3]
 gi|157316141|gb|ABV35239.1| Histidine kinase [Shewanella sediminis HAW-EB3]
          Length = 1200

 Score =  362 bits (928), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 121/594 (20%), Positives = 203/594 (34%), Gaps = 46/594 (7%)

Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291
           P  R+   +   ++      + +     P          E + +           +    
Sbjct: 350 PASRLLTHLEGCSQEPRKPPETITLGWEPWFQLVSRIFEENQQY------TRHLAEQNRR 403

Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLL 350
           L        E L          Y      L     D  P    F    G     N S   
Sbjct: 404 LDKLVARRTERLKETTERREREYA-----LLRSLFDSIPEAIVFKDKEGKYLGCNKSAER 458

Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
           +  Y   + I        L    +     A    +L             L          
Sbjct: 459 MLGYTESEMIGQESI--RLTTDEQSVRIKAEDERVLSERTPLRYQEKVELA------GKP 510

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA--II 468
           + +  +     N+  E +    +  +      +  ++ +   +    ++A  DG+    +
Sbjct: 511 VLLDTLKLPFYNRRGELLGLIAVWRDVTREYESAEQLRLSEERYHLAMDAVEDGLWDWYL 570

Query: 469 NREGIILSTNRAVSKLFGYPVED--ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
           + E II   N A   + GY   +   L       +  +    +  Y  + LS  +    +
Sbjct: 571 DSEQII--CNPAYYSMLGYKSNEFPALVSTLDDLIHPDDRIRVEEYRDQYLSDPI-GAYD 627

Query: 527 KITLGSTKEEKLLSLR-----IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE 581
                  K      +      +             T  DI+  K  +  +  AK+ AE  
Sbjct: 628 IEFRMRGKSGHYHWVLSRGRVVEFTVDNQPKRMVGTHKDITRHKSNEVAMLEAKQDAESA 687

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
           + +KS+FLA +SHEIRTP+ AIIG  ++ +     P    +  +Y +    S   +L I+
Sbjct: 688 NLYKSEFLANMSHEIRTPMNAIIGMLQLAQRTSLTP----QQEDYLDKAGFSAQSLLRII 743

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-AD 700
           ND+LD SKIE+GK+ L      LD+ +  A+ L  L A +K + +          IL  D
Sbjct: 744 NDILDFSKIEAGKLELERVGFPLDKVLDHALDLNALKAQQKGVELLLYAPVTAGLILEGD 803

Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE------VILRVRDTGVGMTNYELE 754
              + Q+ +N+LSNA+ FT SG    I        E      +   VRDTG+G++  +  
Sbjct: 804 PLRLGQVLINMLSNAVKFTQSG---EIELGCEDVGERDHRITLKFWVRDTGIGISKEQQA 860

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
                F Q   S   +  GTGLGL ++K +V    GK  + S    G+      
Sbjct: 861 SLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGKMQVQSEMGVGSTFSFTI 914



 Score = 47.3 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 67/223 (30%), Gaps = 14/223 (6%)

Query: 79  IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGM-RLCDVSDILHIDPNNHIGDLL 137
                   +  D  G     ++   + +G    +MIG   +   +D   +        +L
Sbjct: 434 DSIPEAIVFK-DKEGKYLGCNKSAERMLGYTESEMIGQESIRLTTDEQSVRIKAEDERVL 492

Query: 138 KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN-RVDNDPRAL 196
             +     +     +E     V +D   LP Y+R  E  G     +     R       L
Sbjct: 493 SERTPLRYQE---KVELAGKPVLLDTLKLPFYNRRGELLGL--IAVWRDVTREYESAEQL 547

Query: 197 GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK----VSSLTEYYAHKDD 252
               ++    +  ++ G      +   I    +    L  K+     + S  +   H DD
Sbjct: 548 RLSEERYHLAMDAVEDGLWDWYLDSEQIICNPAYYSMLGYKSNEFPALVSTLDDLIHPDD 607

Query: 253 VLKTEKYPL--LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293
            ++ E+Y    L+    +   +      + + +        ++
Sbjct: 608 RIRVEEYRDQYLSDPIGAYDIEFRMRGKSGHYHWVLSRGRVVE 650


>gi|186683317|ref|YP_001866513.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186465769|gb|ACC81570.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 701

 Score =  362 bits (928), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 100/429 (23%), Positives = 184/429 (42%), Gaps = 37/429 (8%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINREGIILS 476
             +  +    M            R ++  +     +   ++E  ++  I +++  G + +
Sbjct: 107 ALRQARSQAQMNAVAALQNYERLRESQDSLRQSEERYRLLVEGVTNYAIFMLDPNGNVTT 166

Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI-TLGSTKE 535
            N    ++ GY   +I+ +PF                 ++L   + +   +       K+
Sbjct: 167 WNIGAERILGYQEAEIIGQPFERVFSPEAIKQGLP--KQVLRKAVAEGFSRENRWHIRKD 224

Query: 536 EKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNKLSHAKKIAEKE---------- 581
                   +I  L         +S  M DI+E KQ + +        +            
Sbjct: 225 GTFFWAHCLITPLLDDDGNLRGFSKIMQDITERKQAEEEKEQLLLREQAARAVSEAAQSA 284

Query: 582 ----SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
               +  K +FLA VSHE+RTP+TAIIG++ +++    G L   +       I+R+ NL 
Sbjct: 285 AEAANRSKDEFLAIVSHELRTPMTAIIGWAGMLQT---GVLDEAKATLALEIIERNANLQ 341

Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697
           + ++ DLLDIS+I  G+++L  + V L E ++ AI +VQ  AN K I + T    +I +I
Sbjct: 342 MQLIEDLLDISRIVRGELSLSIDLVDLVEVITAAIEVVQSLANAKDIQLETILDTSIEKI 401

Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN-----------EEVILRVRDTGV 746
             D   ++Q+ LN+L+NAI FTP+GG++ +  +                 + + V DTG 
Sbjct: 402 WGDSDRLQQVVLNLLTNAIKFTPNGGRVEVRLSKEMGSREEFSQPAIPNYLQIEVTDTGK 461

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIE 805
           G++   L    + F Q  ++     +G GLGL +A  +V+ + G     S    +G    
Sbjct: 462 GISPDFLPHVFERFWQADSTHTRSNKGLGLGLAIALHLVELHGGTIDAQSQGIGQGATFT 521

Query: 806 IIFPLYDTS 814
           +  P+ + S
Sbjct: 522 VKLPILEES 530



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 34/311 (10%), Positives = 78/311 (25%), Gaps = 22/311 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + +D +G +   +    + +G    ++IG     V     I        L K     + 
Sbjct: 155 IFMLDPNGNVTTWNIGAERILGYQEAEIIGQPFERVFSPEAIKQGLPKQVLRKAVAEGFS 214

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +   W I     +        P+   +    GF    I+             ++L  +  
Sbjct: 215 RENRWHIRKDGTFFWAHCLITPLLDDDGNLRGFSK--IMQDITERKQAEEEKEQLLLREQ 272

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
               + +   S  +               R K++  ++  +              +L + 
Sbjct: 273 AARAVSEAAQSAAEA------------ANRSKDEFLAIVSHELRTPMTAIIGWAGMLQTG 320

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
              L E +    + + +         +++    S       +         E      E 
Sbjct: 321 V--LDEAKATLALEIIERNANLQMQLIEDLLDISRIVRGELSLSIDLVDLVEVITAAIEV 378

Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
           V        +         + S   +              L+ L +A K + N     V 
Sbjct: 379 VQSLANAKDIQLE---TILDTSIEKIWGDSDR---LQQVVLNLLTNAIKFTPNGGRVEVR 432

Query: 386 LYRSDRTCIAA 396
           L +   +    
Sbjct: 433 LSKEMGSREEF 443


>gi|304312499|ref|YP_003812097.1| Response regulator receiver [gamma proteobacterium HdN1]
 gi|301798232|emb|CBL46454.1| Response regulator receiver [gamma proteobacterium HdN1]
          Length = 994

 Score =  362 bits (928), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 101/428 (23%), Positives = 204/428 (47%), Gaps = 12/428 (2%)

Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
           A        + N    ++   +    A+         G       +R   R+++    +L
Sbjct: 225 AVHFYGEPTKENSGLYISAFLVALAIASIAITVAMTVGALNSLFHSRELNREIQAARQRL 284

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
            ++   T D +  I  +G++   + + ++LFGY  ++++ +   + + +   +  + YL 
Sbjct: 285 EAVFSTTVDAMITITPKGMVQEFSPSATRLFGYLAQEVVGQNVKMLMPEPYRTEHDGYLQ 344

Query: 515 EILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSC---YSLTMHDISEWKQEKN 569
             ++   R+ +   +  +G  K+  +  +R+ + +   SS    +   + D+S+ K  ++
Sbjct: 345 RYMTTRERRVIGIGREVVGLRKDGSIFPMRLAVGQADLSSGETLFVGMVSDLSQRKAMED 404

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
            L  A + AE+ ++ K+ FL  +SHEIRTP+ AIIGF++V+      P    +   Y   
Sbjct: 405 SLREAAEHAERAAAAKTRFLGNMSHEIRTPMNAIIGFTDVLLQTELTP----KQRGYLTT 460

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           + +S   +L ++ND+LD++K++SGK+ L     SL        + +++ A  K ++    
Sbjct: 461 VSQSSRTLLALLNDILDVTKLDSGKVVLESTDFSLRAVSELVDATLRVSAERKGLVFSCV 520

Query: 690 FANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748
           + + +P     D   + Q+  N++ NAI FT SG ++ +   +  + +V ++V DTG+GM
Sbjct: 521 YPDQVPEFFKGDSLRIGQVLTNLVGNAIKFTESG-EVRLLFGYE-SGQVHIQVSDTGIGM 578

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           +  +      PF Q   S   R  GTGLG  +++ +VD   G+  + S   KG++  +  
Sbjct: 579 SQAQAATIFDPFTQADASISRRFGGTGLGTTISRQLVDVMGGRIEVESELGKGSIFHVWL 638

Query: 809 PLYDTSHP 816
           PL   S P
Sbjct: 639 PLAVGSKP 646


>gi|158521107|ref|YP_001528977.1| multi-sensor hybrid histidine kinase [Desulfococcus oleovorans Hxd3]
 gi|158509933|gb|ABW66900.1| multi-sensor hybrid histidine kinase [Desulfococcus oleovorans Hxd3]
          Length = 1721

 Score =  362 bits (928), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 118/825 (14%), Positives = 263/825 (31%), Gaps = 104/825 (12%)

Query: 86   TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY- 144
             +  D +G    ++    K  G    +++G     +    H +       +   + T   
Sbjct: 733  IFTTDENGRFSFVNPVAQKISGYDETELLGRHFTMLIPPEHHEAVARFYGIQFTEKTPNT 792

Query: 145  -GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
              +  +   +G    V +      I  +N   +GF+   +           A  +    +
Sbjct: 793  YYEMPMLRKDG--KRVWLGQNTGLIL-KNGRVAGFQ--VVARDITDRKQAEAALRAEVMR 847

Query: 204  FSHLHEIKKGHSSVEKEKYDIFSQQSPP-------PHLRMKNKVSSLTEYYAHKDDVLKT 256
               +    +    +   K DI                  +   +  L     +    LK 
Sbjct: 848  NRTITGTAQDAIVMIDPKGDISFWNPAAERMFGYTGQEALGQNLHRLLPPQRYHAAHLKA 907

Query: 257  EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
                  T    +  +  +   ++ +                + +  +      +     +
Sbjct: 908  FLQFQQTGMGDATGKTLELAALDKDGREFPIELSLSALRLDDGWHAVGIMRDITDRKRAE 967

Query: 317  EGENLTPETVDKCPIPF-----FVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
            +      E +             V      +  ANP+   +    SVD +          
Sbjct: 968  DKLRSAHERIHALMESVQAGIILVRKSDRVIVEANPAAARIADV-SVDALVGTPCQEHFC 1026

Query: 371  DAP-------KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
             A         L          +YR+D   +     + ++  + E+ L  +F+      +
Sbjct: 1027 PAEIGRCPVFDLGQEVDNSERSVYRADGKHVPILKTVTSLSLDGEDYLLESFVDITDLKR 1086

Query: 424  FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT---------SDGIAIINREGII 474
              E +       E +        + + + ++   +E +         +D + + + +   
Sbjct: 1087 AEEELRFQTRLQELLTEISTT-YISLPLDRMDVAVENSLGEMGIFVGADRVYLFDYDFEK 1145

Query: 475  LSTNRA--------VSKL-------FGYPVEDILRKPFTVFLEQNTPSVM--NHYLTEIL 517
               N            ++       F    + +        L  +    +     +  +L
Sbjct: 1146 QVCNNTHEWCAAGIAPRIDTLQAIPFSAIPQWVNAHRQGKTLYIDDIKALTPEDGVRRLL 1205

Query: 518  S-LDLRQTLEKITLGSTKEEKLLSL-RIIIKKLPFSSC------YSLTMHDISEWKQEKN 569
                ++  +    + + +         I   +    +       ++  + +I +  + + 
Sbjct: 1206 EPQGVQSMIAVPLMDNERCLGFAGFDSISALRHYSDAEKKLLTVFAQMLVNIRKRHEIEQ 1265

Query: 570  KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
             L  A + A   +  KS+FLA +SHEIRTP+  I+G + ++               +A  
Sbjct: 1266 SLHQATQRARAATQAKSEFLANMSHEIRTPMNGILGMTSLLLETELTG----EQRRFAEI 1321

Query: 630  IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
            +  +G+ +L+I+ND+LD SKIE+GK+ L     SL++ +      + + A++K I +   
Sbjct: 1322 VRNNGDALLEIINDILDFSKIEAGKLELEMVDFSLNKLLEGLAGALSVQAHKKGIELIYD 1381

Query: 690  FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG------------------------- 723
                 P  +  D   ++QI  N++ NAI FT  G                          
Sbjct: 1382 IEPGTPSHVRGDPGRLRQILANLMGNAIKFTEKGEVFVQIKTGEAVAADTVAETEAGAPD 1441

Query: 724  ------QIIISTTHTSNEEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
                  ++ +S +      V     V+DTG+G++  ++E   + F Q  +S      GTG
Sbjct: 1442 VKSTEPEVAVSVSDNDAPAVTLLFSVKDTGIGISPEKIETIFESFTQADSSITRNFGGTG 1501

Query: 776  LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820
            LGL +++ +     GK ++ S P  G+             P + +
Sbjct: 1502 LGLTISRKLAGMLGGKLWVTSNPGAGSTFAFT---ARFEAPEEAV 1543



 Score =  145 bits (366), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 37/321 (11%), Positives = 87/321 (27%), Gaps = 15/321 (4%)

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
           P +                   +    +   +        +      E E    + V+  
Sbjct: 672 PARAGLAAAFTGLLLTAAVTLVMVGYIRRRRQLEGLVAQRT--RSLRESEKRYAQIVENA 729

Query: 330 PIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388
               F     G   + NP    ++ Y   + +      + L+             +    
Sbjct: 730 NDTIFTTDENGRFSFVNPVAQKISGYDETELLGR--HFTMLIPPEHHEAVARFYGIQFTE 787

Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
                      +  ++ + +             N          +  +  D +  +  + 
Sbjct: 788 KTPNTY---YEMPMLRKDGKRVWLGQNTGLILKN--GRVAGFQVVARDITDRKQAEAALR 842

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT-PS 507
            EVM+  +I     D I +I+ +G I   N A  ++FGY  ++ L +     L      +
Sbjct: 843 AEVMRNRTITGTAQDAIVMIDPKGDISFWNPAAERMFGYTGQEALGQNLHRLLPPQRYHA 902

Query: 508 VMNHYLTEILSLDL--RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY--SLTMHDISE 563
                  +     +              K+ +   + + +  L     +     M DI++
Sbjct: 903 AHLKAFLQFQQTGMGDATGKTLELAALDKDGREFPIELSLSALRLDDGWHAVGIMRDITD 962

Query: 564 WKQEKNKLSHAKKIAEKESSH 584
            K+ ++KL  A +        
Sbjct: 963 RKRAEDKLRSAHERIHALMES 983



 Score =  124 bits (311), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 38/427 (8%), Positives = 117/427 (27%), Gaps = 28/427 (6%)

Query: 181  FGIVHVNRVDN----DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM 236
             G +   R             +  +K+++ + E          E             +  
Sbjct: 695  VGYIRRRRQLEGLVAQRTRSLRESEKRYAQIVENANDTIFTTDENGRFSFVNPVAQKISG 754

Query: 237  KNKVSSLTEYY-----AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291
             ++   L  ++         + +        T +  +   +      +  +    Q  G 
Sbjct: 755  YDETELLGRHFTMLIPPEHHEAVARFYGIQFTEKTPNTYYEMPMLRKDGKRVWLGQNTGL 814

Query: 292  L---QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPS 347
            +      +          +     A                      +   G++ + NP+
Sbjct: 815  ILKNGRVAGFQVVARDITDRKQAEAALRAEVMRNRTITGTAQDAIVMIDPKGDISFWNPA 874

Query: 348  FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR-SDRTCIAASARLHTIQWN 406
               +  Y   + +     L  LL   +    +    +   +         +  L  +  +
Sbjct: 875  AERMFGYTGQEALGQN--LHRLLPPQRYHAAHLKAFLQFQQTGMGDATGKTLELAALDKD 932

Query: 407  RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
                          A +  +     GI  +  D +  + K+     ++ +++E+   GI 
Sbjct: 933  GREF---PIELSLSALRLDDGWHAVGIMRDITDRKRAEDKLRSAHERIHALMESVQAGII 989

Query: 467  IINREGI-ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
            ++ +    I+  N A +++    V+ ++  P               +         ++  
Sbjct: 990  LVRKSDRVIVEANPAAARIADVSVDALVGTPCQEHFCPAEIGRCPVFDLG------QEVD 1043

Query: 526  EKITLGSTKEEKLLSL--RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
                     + K + +   +    L        +  DI++ K+ + +L    ++ E  + 
Sbjct: 1044 NSERSVYRADGKHVPILKTVTSLSLDGEDYLLESFVDITDLKRAEEELRFQTRLQELLTE 1103

Query: 584  HKSDFLA 590
              + +++
Sbjct: 1104 ISTTYIS 1110


>gi|325289318|ref|YP_004265499.1| PAS/PAC sensor signal transduction histidine kinase
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324964719|gb|ADY55498.1| PAS/PAC sensor signal transduction histidine kinase
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 675

 Score =  362 bits (928), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 104/515 (20%), Positives = 197/515 (38%), Gaps = 30/515 (5%)

Query: 317 EGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
           E        +        +    G +   N S   LT +   +      G    +    +
Sbjct: 9   ERLEFIAAAMAGMGDGVILTDRAGRILDINRSAEQLTGWTEKEAAGKPCG-EVFVLVDTV 67

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
           +      PV +   D   +        +    +    ++           +      +  
Sbjct: 68  TGKRLESPVFISLRDEAPVGLPKHSALMTREGKTFF-ISASCSPVRASDGKAQGAVLVFR 126

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
           +    +  + +++ E   L ++LEA   GIA++  + ++   NR + +LF    E+IL +
Sbjct: 127 DIDRLKQIEEELKKERNNLNNVLEALPAGIALVGEDAVVRWVNRPLLELFQIREENILGQ 186

Query: 496 PFTVFLEQ-----------------NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
            F                            +   L E +SL              +  + 
Sbjct: 187 RFGNGAHCIYSREKGCGEGEKCRFCEIRQNIGLVLREKVSLKDVMLQRSFHRAEEENCRW 246

Query: 539 LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
           L++  I           L + DI+E K  +  L  ++  AE  +  KS+FLA +SHEIRT
Sbjct: 247 LNISFIPLAAAGEKRIVLAIEDITEQKNYEEALQKSRDEAESANRVKSEFLANMSHEIRT 306

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
           PL  ++G  +++         +    E       S N +  +++ +LD S+IE+GK+ + 
Sbjct: 307 PLNGLVGMMDLLSRTD----PDEEQQECIRMAKFSANTLFKVIDGILDFSRIEAGKIAIA 362

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIH 717
                L   + E I +  + A +K + +      ++P  +  D   ++QI  N++ NA+ 
Sbjct: 363 KISFDLKALLEEVIKIHTVLAEQKGLALEHDIPPDLPPYLTGDPDHLRQILNNLIGNALK 422

Query: 718 FTPSGGQIIISTTHTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
           FT  G QI +S     ++    E+   V D+GVG++  +++   K F Q+ +S   R  G
Sbjct: 423 FTDRG-QIKVSVREIRHQGQQVELEFCVADSGVGISPGKMDLLFKRFSQVDSSVTRRYSG 481

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           TGLGL + K + +   G     S   KG++     
Sbjct: 482 TGLGLAICKQLAELMGGAIRAESEMGKGSVFRFTL 516



 Score = 45.8 bits (107), Expect = 0.032,   Method: Composition-based stats.
 Identities = 16/148 (10%), Positives = 43/148 (29%), Gaps = 10/148 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD----LLKRQNTW- 143
            D  G + +I+    +  G    +  G    +V  ++       +       L+ +    
Sbjct: 28  TDRAGRILDINRSAEQLTGWTEKEAAGKPCGEVFVLVDTVTGKRLESPVFISLRDEAPVG 87

Query: 144 -YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
               + L   EG   ++    +  P+ + + +  G     +              K+   
Sbjct: 88  LPKHSALMTREGKTFFIS--ASCSPVRASDGKAQGA--VLVFRDIDRLKQIEEELKKERN 143

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSP 230
             +++ E      ++  E   +     P
Sbjct: 144 NLNNVLEALPAGIALVGEDAVVRWVNRP 171


>gi|188991208|ref|YP_001903218.1| Two-component system sensor histidine kinase-response regulator
           hybridprotein [Xanthomonas campestris pv. campestris
           str. B100]
 gi|167732968|emb|CAP51164.1| Two-component system sensor histidine kinase-response regulator
           hybridprotein [Xanthomonas campestris pv. campestris]
          Length = 1364

 Score =  362 bits (928), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 115/638 (18%), Positives = 224/638 (35%), Gaps = 41/638 (6%)

Query: 214 HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE 273
            S++        S            +          +    +       T   ++ P   
Sbjct: 245 ESTLGDRDDVAISLSDREDTQHTFYRSGIAAPESMRRAAHTQLLPIYGRTWVLTARPTLH 304

Query: 274 DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF 333
              ++N N                 +   L   N         +   L            
Sbjct: 305 FIGSLNQNSPWLMGSLVLGTAILLAALLGLYFSNGLRREEVLRKQMELAALVSHSSEAIV 364

Query: 334 FVYSHGNLFYANPSFLLLTKYKSVDDIEI---------AGGLSTLLDAPKLSDNNAIKPV 384
                G + + NP+   +  Y +   I              +  +               
Sbjct: 365 AETPDGEITHWNPAAEAMFGYPADVAIGQDLTTLLSPQPYAMPQIDQDEAPPVAALSAAQ 424

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
            +   D   +   A    I    +N+++     F   ++   +  +       ++ ++ +
Sbjct: 425 TMRHRDGHQVFVLASKAPI-IEHDNAVSGHSHFFRDISERVRSHQRIVDLNASLEHQVAE 483

Query: 445 R--KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
           R  ++    +   +IL      I   +  G +   N A  KL GY  +D++ +       
Sbjct: 484 RTSELVQFSVLQRAILAHAGYAIIATDSNGFVTMFNPAAEKLLGYSADDVIGRRKASQFI 543

Query: 503 QNTPSVMNHY-LTEILSLDLRQTLEK-------------ITLGSTKEEKLLSLRIIIKKL 548
           +          L E     +  TLE                   +++ + L + + +  L
Sbjct: 544 EADELQERALRLAEQTGTPVAGTLEAVAALTSLGRSDTSEWTYVSQDGRRLPVLLTLSTL 603

Query: 549 PFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
              +     Y     D++E K  + +L  A   A   +  KSDFLA +SHEIRTP+ AI+
Sbjct: 604 RDDNDQVIGYLGVAVDLTEQKLHEKQLRLAMDAARSANQSKSDFLANMSHEIRTPMNAIL 663

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           G   +++             +    IDRS   +L+I+ND+LD SKIE+G+++L   P  L
Sbjct: 664 GMLYLLQRSELPGAA----QDMVTKIDRSARSLLEIINDILDFSKIEAGRIDLERAPFDL 719

Query: 665 DEAVSEAISLVQLYANEKRILIRTS-FANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
           ++       L++   + K + +           +L D   + Q+ +N++ NAI FT  G 
Sbjct: 720 NQLFDNIADLMRSSLSAKPVEMIVEPLPRECRWLLGDALRINQVLVNLVGNAIKFTEQG- 778

Query: 724 QIIISTTHTSNEE-----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
           ++++S     + +     ++  VRDTG+G++  +      PF Q   S   R  G+GLGL
Sbjct: 779 EVVLSVRRFPSGDPNKIKLLFSVRDTGIGISKEKQSLIFSPFLQADTSTSRRYGGSGLGL 838

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
            +++ +++   G   + S P +G+    +  L  T  P
Sbjct: 839 TISRRLIELMGGALEVESVPGRGSEFYFVITLERTDPP 876



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/382 (9%), Positives = 87/382 (22%), Gaps = 26/382 (6%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI-------LHIDPNNHIGDLLKRQNTW 143
             G +   +       G  A   IG  L  +          +  D    +  L   Q   
Sbjct: 368 PDGEITHWNPAAEAMFGYPADVAIGQDLTTLLSPQPYAMPQIDQDEAPPVAALSAAQ--- 424

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
               T+   +G    V +  +  PI   +   SG   F                  L+  
Sbjct: 425 ----TMRHRDGHQ--VFVLASKAPIIEHDNAVSGHSHF--FRDISERVRSHQRIVDLNAS 476

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
             H  ++ +  S + +      +  +   +  +    +     +    + L       + 
Sbjct: 477 LEH--QVAERTSELVQFSVLQRAILAHAGYAIIATDSNGFVTMFNPAAEKLLGYSADDVI 534

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
               +    E            +Q    +    +      S     +    +   +    
Sbjct: 535 GRRKASQFIEADELQERALRLAEQTGTPVAGTLEAVAALTSLGRSDTSEWTYVSQDGRRL 594

Query: 324 ETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
             +           +  +       + LT+ K  +        +        SD  A   
Sbjct: 595 PVLLTLST--LRDDNDQVIGYLGVAVDLTEQKLHEKQLRLAMDAARSANQSKSDFLANMS 652

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
             +       +     L   +        +T I     +     +       +       
Sbjct: 653 HEIRTPMNAILGMLYLLQRSELPGAAQDMVTKIDRSARS----LLEIINDILDFSKIEAG 708

Query: 444 KRKMEIEVMQLCSILEATSDGI 465
           +  +E     L  + +  +D +
Sbjct: 709 RIDLERAPFDLNQLFDNIADLM 730



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/284 (8%), Positives = 63/284 (22%), Gaps = 25/284 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG--- 145
            D++G++   +    K +G  A  +IG R               +    +      G   
Sbjct: 509 TDSNGFVTMFNPAAEKLLGYSADDVIGRRKASQFIEADELQERALRLAEQTGTPVAGTLE 568

Query: 146 -----------KTTLW-PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193
                       T+ W  +      +P+ L    +   N +  G+ G  +          
Sbjct: 569 AVAALTSLGRSDTSEWTYVSQDGRRLPVLLTLSTLRDDNDQVIGYLGVAV--DLTEQKLH 626

Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253
               +         ++ K    +    +              ++                
Sbjct: 627 EKQLRLAMDAARSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSELPGAAQDMVTKID 686

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ-------YFGTLQNNSKESFEYLSHR 306
                   + ++     + E    I+L +                  + S +  E +   
Sbjct: 687 RSARSLLEIINDILDFSKIEAGR-IDLERAPFDLNQLFDNIADLMRSSLSAKPVEMIVEP 745

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLL 350
                     +   +    V+           G +  +   F  
Sbjct: 746 LPRECRWLLGDALRINQVLVNLVGNAIKFTEQGEVVLSVRRFPS 789


>gi|153825247|ref|ZP_01977914.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae MZO-2]
 gi|149741075|gb|EDM55134.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae MZO-2]
          Length = 1331

 Score =  362 bits (928), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 97/384 (25%), Positives = 172/384 (44%), Gaps = 10/384 (2%)

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
              +       R+ +RK+  +      IL+AT + +  ++ +G  L+ N     L G   
Sbjct: 450 AIQLSQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTVNAKFLDLMGLYN 509

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
            +++ K                    +      Q  E   +  T  ++ + +        
Sbjct: 510 NEVIDKEPQEIFPAEVAERFAAAHQVLTQQQSSQNYEVSLVDYTGVQREMLVYEASFSDR 569

Query: 550 FS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
               +     + D++E K+ +++L  AK+ A+  S  K DFLA +SHEIRTP+ AI+G +
Sbjct: 570 ADKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMA 629

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
            +  N            +Y   I+ S   +L I+ND+LD SK+E+GK+N+     +LD+ 
Sbjct: 630 HLALNTPLDTT----QRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDV 685

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI- 725
           +    ++V L A EK I        +IP  ++ D   + Q+ +N+  NA+ FT  G  + 
Sbjct: 686 LDNVTAVVSLKAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVL 745

Query: 726 --IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
              +S  +     +   V+DTG+G+   +L+     F Q  NS   +  GTGLGL ++K 
Sbjct: 746 SARVSQLNEQQVTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQ 805

Query: 784 MVDANMGKFYIFSTPAKGTLIEII 807
           +V+   G+  + S   KG+  E  
Sbjct: 806 LVELMGGQITVHSEEGKGSTFEFS 829



 Score = 44.2 bits (103), Expect = 0.092,   Method: Composition-based stats.
 Identities = 13/143 (9%), Positives = 43/143 (30%), Gaps = 3/143 (2%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + + A G    ++ +    +G Y  ++I     ++      +       +L +Q +   
Sbjct: 485 MYCLSADGKFLTVNAKFLDLMGLYNNEVIDKEPQEIFPAEVAERFAAAHQVLTQQQSSQN 544

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
                 ++ T +   + +       R  + +G    GI+       +     ++  +   
Sbjct: 545 YEVSL-VDYTGVQREMLVYEASFSDRADKVNGI--VGILLDMTERKEMEDELRKAKEAAD 601

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQ 228
            + + K    +    +       
Sbjct: 602 AMSQAKGDFLANMSHEIRTPMNA 624



 Score = 41.9 bits (97), Expect = 0.50,   Method: Composition-based stats.
 Identities = 22/228 (9%), Positives = 56/228 (24%), Gaps = 33/228 (14%)

Query: 286 KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYA 344
                 L + S       +            E   L  E +D  P P   + + G     
Sbjct: 438 HWLSQMLDDLSVAIQLSQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTV 497

Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
           N  FL L    + + I+              ++             +   + +  +  + 
Sbjct: 498 NAKFLDLMGLYNNEVIDKEP------QEIFPAEVAERFAAAHQVLTQQQSSQNYEVSLVD 551

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI------- 457
           +       + +      ++  +     GI  +  + +  + ++        ++       
Sbjct: 552 YTGVQREMLVYEASFS-DRADKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDF 610

Query: 458 LEATS-------DGIAI---------INREGI--ILSTNRAVSKLFGY 487
           L   S       + I           ++      +   N +   L G 
Sbjct: 611 LANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINESAKNLLGI 658


>gi|300866806|ref|ZP_07111485.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300335188|emb|CBN56645.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 740

 Score =  362 bits (928), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 96/401 (23%), Positives = 181/401 (45%), Gaps = 34/401 (8%)

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILRKP 496
            +    + +   E  +  +++E  SD I + + +   IL  N A   L GY + DIL   
Sbjct: 344 AEIEQAESEQIEERARYRAVVEQASDSIFLFDAKTKRILEANTAFINLLGYTLNDILNLT 403

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--Y 554
                       +N  +  ++    R+      +   ++  L+ + +    + +      
Sbjct: 404 VYDITVH-DKDTVNRNIELLIRRKQRRLG--EVIYCRRDGSLVDVEVNANLISYGGREII 460

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
              + DI++ K+   ++  AK+ AE  +  KS FLA +SHE+RTPL AIIG+SE+++   
Sbjct: 461 CTVVRDITDRKRVLEEMYKAKEAAEAANLAKSQFLANMSHELRTPLNAIIGYSEMLQEDA 520

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
              LG   ++     I ++G  +L +++++LD+SKIE+G+M +      +   + + ++ 
Sbjct: 521 ED-LGEEEFVCDVKNIYKAGKHLLGLIDEILDLSKIEAGRMEMELMTFDVRATIRDVVAT 579

Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-- 732
           V+    +    +   +  +I  + +D   V+QI  N+LSNA  FT  G  I ++ +    
Sbjct: 580 VEPLLIKNANRLNVQYGEDIGFMHSDQTKVRQILFNLLSNAAKFTHDG-TISLTVSRERV 638

Query: 733 ------------------------SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
                                     + +I    DTG+GM++ +L++  +PF Q   S  
Sbjct: 639 AIESEKLKDRESDVENDLSKTLIADYDFLIFNCTDTGIGMSSEQLQRLFQPFMQADPSTT 698

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            +  GTGLGL +AK   +   G+  + S   KG+   +I P
Sbjct: 699 RKYGGTGLGLAIAKKFCEMMGGEITVKSELGKGSTFTVIIP 739



 Score = 46.9 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 20/180 (11%), Positives = 54/180 (30%), Gaps = 18/180 (10%)

Query: 46  HDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKT 105
            +  +  +   + +          S++ F+FD   +             + E +      
Sbjct: 344 AEIEQAESEQIEERARYRAVVEQASDSIFLFDAKTK------------RILEANTAFINL 391

Query: 106 IGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAA 165
           +G     ++ + + D++       N +I  L++R+    G+      +G+   V +++ A
Sbjct: 392 LGYTLNDILNLTVYDITVHDKDTVNRNIELLIRRKQRRLGEVIYCRRDGSL--VDVEVNA 449

Query: 166 LPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF 225
             I    RE        +V              +  +     +  K    +    +    
Sbjct: 450 NLISYGGREII----CTVVRDITDRKRVLEEMYKAKEAAEAANLAKSQFLANMSHELRTP 505


>gi|15641361|ref|NP_230993.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae O1 biovar El Tor str. N16961]
 gi|153822062|ref|ZP_01974729.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae B33]
 gi|229511262|ref|ZP_04400741.1| hypothetical protein VCE_002669 [Vibrio cholerae B33]
 gi|229518380|ref|ZP_04407824.1| hypothetical protein VCC_002404 [Vibrio cholerae RC9]
 gi|229608072|ref|YP_002878720.1| hypothetical protein VCD_002990 [Vibrio cholerae MJ-1236]
 gi|254848471|ref|ZP_05237821.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae MO10]
 gi|255745740|ref|ZP_05419688.1| hypothetical protein VCH_002101 [Vibrio cholera CIRS 101]
 gi|262158982|ref|ZP_06030094.1| hypothetical protein VIG_002222 [Vibrio cholerae INDRE 91/1]
 gi|9655841|gb|AAF94507.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae O1 biovar El Tor str. N16961]
 gi|126520395|gb|EAZ77618.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae B33]
 gi|229345095|gb|EEO10069.1| hypothetical protein VCC_002404 [Vibrio cholerae RC9]
 gi|229351227|gb|EEO16168.1| hypothetical protein VCE_002669 [Vibrio cholerae B33]
 gi|229370727|gb|ACQ61150.1| hypothetical protein VCD_002990 [Vibrio cholerae MJ-1236]
 gi|254844176|gb|EET22590.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae MO10]
 gi|255736815|gb|EET92212.1| hypothetical protein VCH_002101 [Vibrio cholera CIRS 101]
 gi|262029167|gb|EEY47819.1| hypothetical protein VIG_002222 [Vibrio cholerae INDRE 91/1]
          Length = 1331

 Score =  362 bits (928), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 97/384 (25%), Positives = 172/384 (44%), Gaps = 10/384 (2%)

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
              +       R+ +RK+  +      IL+AT + +  ++ +G  L+ N     L G   
Sbjct: 450 AIQLSQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTVNAKFLDLMGLYN 509

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
            +++ K                    +      Q  E   +  T  ++ + +        
Sbjct: 510 NEVIDKEPQEIFPAEVAERFAAAHQVLTQQQSSQNYEVSLVDYTGVQREMLVYEASFSDR 569

Query: 550 FS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
               +     + D++E K+ +++L  AK+ A+  S  K DFLA +SHEIRTP+ AI+G +
Sbjct: 570 ADKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMA 629

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
            +  N            +Y   I+ S   +L I+ND+LD SK+E+GK+N+     +LD+ 
Sbjct: 630 HLALNTPLDTT----QRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDV 685

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI- 725
           +    ++V L A EK I        +IP  ++ D   + Q+ +N+  NA+ FT  G  + 
Sbjct: 686 LDNVTAVVSLKAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVL 745

Query: 726 --IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
              +S  +     +   V+DTG+G+   +L+     F Q  NS   +  GTGLGL ++K 
Sbjct: 746 SARVSQLNEQQVTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQ 805

Query: 784 MVDANMGKFYIFSTPAKGTLIEII 807
           +V+   G+  + S   KG+  E  
Sbjct: 806 LVELMGGQITVHSEEGKGSTFEFS 829



 Score = 44.2 bits (103), Expect = 0.092,   Method: Composition-based stats.
 Identities = 13/143 (9%), Positives = 43/143 (30%), Gaps = 3/143 (2%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + + A G    ++ +    +G Y  ++I     ++      +       +L +Q +   
Sbjct: 485 MYCLSADGKFLTVNAKFLDLMGLYNNEVIDKEPQEIFPAEVAERFAAAHQVLTQQQSSQN 544

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
                 ++ T +   + +       R  + +G    GI+       +     ++  +   
Sbjct: 545 YEVSL-VDYTGVQREMLVYEASFSDRADKVNGI--VGILLDMTERKEMEDELRKAKEAAD 601

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQ 228
            + + K    +    +       
Sbjct: 602 AMSQAKGDFLANMSHEIRTPMNA 624



 Score = 41.9 bits (97), Expect = 0.50,   Method: Composition-based stats.
 Identities = 22/228 (9%), Positives = 56/228 (24%), Gaps = 33/228 (14%)

Query: 286 KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYA 344
                 L + S       +            E   L  E +D  P P   + + G     
Sbjct: 438 HWLSQMLDDLSVAIQLSQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTV 497

Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
           N  FL L    + + I+              ++             +   + +  +  + 
Sbjct: 498 NAKFLDLMGLYNNEVIDKEP------QEIFPAEVAERFAAAHQVLTQQQSSQNYEVSLVD 551

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI------- 457
           +       + +      ++  +     GI  +  + +  + ++        ++       
Sbjct: 552 YTGVQREMLVYEASFS-DRADKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDF 610

Query: 458 LEATS-------DGIAI---------INREGI--ILSTNRAVSKLFGY 487
           L   S       + I           ++      +   N +   L G 
Sbjct: 611 LANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINESAKNLLGI 658


>gi|296332102|ref|ZP_06874566.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305675503|ref|YP_003867175.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296150873|gb|EFG91758.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305413747|gb|ADM38866.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 579

 Score =  362 bits (928), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 90/372 (24%), Positives = 173/372 (46%), Gaps = 23/372 (6%)

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
           D     R  E++  +L +++E    G+ +I+  G I   NR+ +K F      +LR+ + 
Sbjct: 221 DLMEMTRTQEMQRDRLLTVIENIGSGLIMIDGRGFINLVNRSYAKQFHINPNQMLRRLYH 280

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSL 556
              E      +   + +I   + ++           E +   +  +    P        L
Sbjct: 281 DAFEHE---EVIQLVEDIFMTETKKCKLLRLPIKI-ERRYFEVDGVPIMGPDDEWKGIVL 336

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
             HD++E K+ +                + DF+A VSHE++TP+T+I GF+E + +    
Sbjct: 337 VFHDMTETKKLE--------------QMRKDFVANVSHELKTPITSIKGFTETLLDGAM- 381

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
                   E+ + I +    +  +V DLLD+SKIE     L  E     + + E  +L++
Sbjct: 382 -EDKEALSEFLSIILKESERLQSLVQDLLDLSKIEQQNFTLSIETFEPAKMLGEIETLLK 440

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
             A+EK I ++ +   +   +  D   +KQ+ LN+++NA+ +TP GG + I+ T    + 
Sbjct: 441 HKADEKGISLQLNLPKDPLYVSGDPYRLKQVFLNLVNNALTYTPEGGSVAINVTPREKD- 499

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           + + V D+G+G+   E+ +  + F ++   +     GTGLGL + K +++A+ GK  + S
Sbjct: 500 IQIEVADSGIGIQKEEIPRIFERFYRVDKDRSRNSGGTGLGLAIVKHLIEAHEGKIDVKS 559

Query: 797 TPAKGTLIEIIF 808
            P +GT+  +  
Sbjct: 560 EPGRGTVFTVTL 571


>gi|220908983|ref|YP_002484294.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219865594|gb|ACL45933.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 1808

 Score =  362 bits (928), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 133/797 (16%), Positives = 270/797 (33%), Gaps = 91/797 (11%)

Query: 94   YLKEISEELPKTIGNYAFKMIGMRLCD------VSDILHIDPNNH----IGDLLKRQNTW 143
             ++ IS    +  G     + G+ + +      V     I P ++    +   +++    
Sbjct: 886  TIRRISRYGQQLTGRSLDVIEGIPVEEHTEKWGVFYPDGITPASNEMLPLTRAVQQGEVV 945

Query: 144  YGKT-TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
              +   L    GT   + +   A PIY  N E +G  G  +              + L K
Sbjct: 946  TDEEWVLQQPNGT--KITVLCNAGPIY-VNGEITG--GVVVWRDISDRKWREQQQEYLLK 1000

Query: 203  KFSHLHEIKKG-------------HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH 249
                L  +                H  ++   Y + ++     ++  +    +L+    H
Sbjct: 1001 LNDALRPLSDAVEIEAIACRLLGEHLGIDHVFYAMLNEAEGYWNIPWQYSRGTLSMVGNH 1060

Query: 250  KDDVLKTEKYPLLTSEESSLPEQEDFHTI------------------------------- 278
                      P L   +  + E  D   I                               
Sbjct: 1061 PASAYSW-ALPFLRCGDPVIIEDIDHSDIIPSADVAAMAAIQTFAIVSIPLIKGGTLIGT 1119

Query: 279  -----NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF 333
                 N  +  + +    ++  ++ ++  +                N     V+  P   
Sbjct: 1120 LSVTNNAPRVWQPEEVELVRETAERTWAAV---ERARAEMLLRASHNTFRHLVENSPFGV 1176

Query: 334  FVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
            +V      L   +     +   ++V  +        L     L    +        + +T
Sbjct: 1177 YVIDADFRLAQVSAGAQKVF--ENVRPLIGRDFAEVL-QIIWLEPFASEAITHFRHTLKT 1233

Query: 393  CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
                 A     +    + +       E+               +  +    +  +     
Sbjct: 1234 GEPYHAPSIVERRQDTDEVESYDWKIERITLPDGRFGVVCHFYDLSERLHYEAALRDSEE 1293

Query: 453  QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
            +  ++ +  S    + +  G I   NR   +  G  +E++    +      +    +  +
Sbjct: 1294 RFRNLADHMSQLAWMADEHGWIFWYNRRWFEYTGTTLEEMQGWGWQAVHHPDHVDRVVQH 1353

Query: 513  LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKN 569
            +     +           G   + +    R I  +   S     +  T  DI+E KQ + 
Sbjct: 1354 IRHCFEMGEVWEDTFPLRGHDGQYRWFLSRAIPIRDQESGQILRWFGTNTDITERKQAEQ 1413

Query: 570  KLSH-------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
            +          A+  AE+ +  K +FLA +SHE+R+PL  I+G+++++++++F P    +
Sbjct: 1414 ERQRLLEQEQAARAEAERANQIKDEFLAILSHELRSPLNPILGWTQLLQSRKFDPT---K 1470

Query: 623  YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
              E    I+R+  L   +++DLLDI+KI  GK+ ++  PV L   +  AI  ++  A  K
Sbjct: 1471 TNEALATIERNAKLQTQLIDDLLDIAKILRGKLTMNVVPVDLAFVIEAAIDTMRTAAVAK 1530

Query: 683  RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
             + +       I R+  D   ++QI  N+LSNAI FTP+ G + +       +   + + 
Sbjct: 1531 EMTLHAVL-PQIGRVSGDSARLQQIVWNLLSNAIKFTPAKGVVEVRLERE-GDRAKITIS 1588

Query: 743  DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKG 801
            DTG G+    L    + F Q   S   +  G GLGL + + +V+A+ G     S    +G
Sbjct: 1589 DTGKGINPDFLPHLFESFRQEDASTTRQYGGLGLGLAIVRHLVEAHGGTIRAESPGEGQG 1648

Query: 802  TLIEIIFPL--YDTSHP 816
                + FPL   ++  P
Sbjct: 1649 ATFIVQFPLLNAESEQP 1665



 Score =  118 bits (296), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 58/563 (10%), Positives = 135/563 (23%), Gaps = 48/563 (8%)

Query: 53   NFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFK 112
            N  D  +   +     +SE+ F          F            +S    +  G    +
Sbjct: 455  NDIDITERKQAEIALQESESRFRQLTENIDAVFWMREVTESRASYVSPAYERLWGLNPQE 514

Query: 113  MIG--MRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYS 170
            +        +       +P          +  +  +  +    G      +     P+ +
Sbjct: 515  LYENQQAWVNYIHPDDREPVYRAFQAKAAEGLFDEEYRIILPNG--QIRWVHDRCFPLRN 572

Query: 171  RNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP 230
              R    +R  GI              ++ +++F    E      ++    Y     +  
Sbjct: 573  EARAL--YRFTGIAEDITDRKGSEQTLQKSEERFRTSVENMLDCFAI----YQSIRNEQG 626

Query: 231  PPHLRMKNKV--SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288
                     V  ++       ++  +      LL     S    E    +   Q   K+ 
Sbjct: 627  EIVDFRTEYVNDAACLNNQMTREQQIGRGLCELLPGHRDSGLFDEYCQVVETGQALVKEN 686

Query: 289  F-----------------GTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI 331
                                 +        +    +         E E       D   +
Sbjct: 687  LIYEDDYGQQHLTRAFDIRVAKLEDGFIATWRDITDRKRAEVKLLESERQLRIAKDAAAL 746

Query: 332  PFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390
                Y         +     L      + I       T        D  A +  +    D
Sbjct: 747  GIHDYGITSGTIQWDSRVRELWGVGPDEPI----TYETFFSGLHPEDRAATQAAVNRALD 802

Query: 391  RTCI-AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449
                    A    I      +  +              +   G   +    ++ +++ + 
Sbjct: 803  PRGDGKYDAEYRVIHRTDGLTRWIAATGIAIFEHE-RAVRLVGTVQDITARKLAEQEAQE 861

Query: 450  EVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKP-------FTVFL 501
                L +++E   +GI I +     I   +R   +L G  ++ I   P       + VF 
Sbjct: 862  GKQILDALMEYIPEGITIADAPNVTIRRISRYGQQLTGRSLDVIEGIPVEEHTEKWGVFY 921

Query: 502  EQNTPSVMNHYLTEILS-LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLT 557
                    N  L    +        ++  +        +++      +  +       + 
Sbjct: 922  PDGITPASNEMLPLTRAVQQGEVVTDEEWVLQQPNGTKITVLCNAGPIYVNGEITGGVVV 981

Query: 558  MHDISEWKQEKNKLSHAKKIAEK 580
              DIS+ K  + +  +  K+ + 
Sbjct: 982  WRDISDRKWREQQQEYLLKLNDA 1004



 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 62/519 (11%), Positives = 122/519 (23%), Gaps = 47/519 (9%)

Query: 96  KEISEELPKTIGNYAFKMIG--MRLCDVSDILHIDPN-NHIGDLLKRQNTWYGKTTLWPI 152
            + S  L    G       G              D     +   +     +  +  +   
Sbjct: 369 IQWSANLEAMFGLEPGAFDGSFEMFTRFLHPDDRDRVLAAVEQAISTGEDYTIEFRVVYP 428

Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212
            GT             Y  N +     G  I              +  + +F  L E   
Sbjct: 429 NGT--VRWALSQGKVFYGLNGQPVRMTGNDI--DITERKQAEIALQESESRFRQLTENID 484

Query: 213 GHSSVEKEKYDIFSQQSPPPHLRM---KNKVSSLTEY---YAHKDDVLKTEKYPLLTSEE 266
               + +      S  SP           ++    +    Y H DD     +     + E
Sbjct: 485 AVFWMREVTESRASYVSPAYERLWGLNPQELYENQQAWVNYIHPDDREPVYRAFQAKAAE 544

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS----LSAYFDEGENLT 322
               E+      N            L+N ++  + +       +          + E   
Sbjct: 545 GLFDEEYRIILPNGQIRWVHDRCFPLRNEARALYRFTGIAEDITDRKGSEQTLQKSEERF 604

Query: 323 PETVDKCPIPFFVYS----------HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
             +V+     F +Y                Y N +  L  +      I    GL  LL  
Sbjct: 605 RTSVENMLDCFAIYQSIRNEQGEIVDFRTEYVNDAACLNNQMTREQQIGR--GLCELL-- 660

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
           P   D+               +     ++                               
Sbjct: 661 PGHRDSGLFDEYCQVVETGQALVKENLIYEDD-----YGQQHLTRAFDIRVAKLEDGFIA 715

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN---REGIILSTNRAVSKLFGYPV 489
              +  D +  + K+     QL    +A + GI   +     G I   +  V +L+G   
Sbjct: 716 TWRDITDRKRAEVKLLESERQLRIAKDAAALGI--HDYGITSGTIQ-WDSRVRELWGVGP 772

Query: 490 ED-ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK-EEKLLSLRIIIKK 547
           ++ I  + F   L     +     +   L        +       + +     +      
Sbjct: 773 DEPITYETFFSGLHPEDRAATQAAVNRALDPRGDGKYDAEYRVIHRTDGLTRWIAATGIA 832

Query: 548 LPFSSC---YSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
           +           T+ DI+  K  + +    K+I +    
Sbjct: 833 IFEHERAVRLVGTVQDITARKLAEQEAQEGKQILDALME 871



 Score =  108 bits (270), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 45/421 (10%), Positives = 104/421 (24%), Gaps = 27/421 (6%)

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ---SPPPHLRMKNKVS 241
                     A  +  +++     E  +  +     +               L       
Sbjct: 329 TELAERKRVEAELRASEERLRSALEASRMGTWDWNIETGQIQWSANLEAMFGLEPGAFDG 388

Query: 242 SLTEY--YAHKDDV-LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE 298
           S   +  + H DD            S       +      N                + +
Sbjct: 389 SFEMFTRFLHPDDRDRVLAAVEQAISTGEDYTIEFRVVYPNGTVRWALSQGKVFYGLNGQ 448

Query: 299 SFEYLS----HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLT 352
                                 E E+   +  +     F++         Y +P++  L 
Sbjct: 449 PVRMTGNDIDITERKQAEIALQESESRFRQLTENIDAVFWMREVTESRASYVSPAYERLW 508

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
                +  E        +      D   +      ++         R   I         
Sbjct: 509 GLNPQELYENQQAWVNYIHPD---DREPVYRAFQAKAAEGLFDEEYR---IILPNGQIRW 562

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII---- 468
           +    F   N+        GI  +  D + +++ ++    +  + +E   D  AI     
Sbjct: 563 VHDRCFPLRNEARALYRFTGIAEDITDRKGSEQTLQKSEERFRTSVENMLDCFAIYQSIR 622

Query: 469 NREGIIL-----STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
           N +G I+       N A         E  + +     L  +  S +     +++      
Sbjct: 623 NEQGEIVDFRTEYVNDAACLNNQMTREQQIGRGLCELLPGHRDSGLFDEYCQVVETGQAL 682

Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
             E +       ++ L+    I+       +  T  DI++ K+ + KL  +++       
Sbjct: 683 VKENLIYEDDYGQQHLTRAFDIRVAKLEDGFIATWRDITDRKRAEVKLLESERQLRIAKD 742

Query: 584 H 584
            
Sbjct: 743 A 743



 Score = 94.3 bits (233), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 29/344 (8%), Positives = 95/344 (27%), Gaps = 20/344 (5%)

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
             + LL +   + P   +   I+L +    Q    L+                 + A   
Sbjct: 283 GLWGLLIAHHCAAPRLWESLEISLLKELAAQLGIALRQAELYQQSQTELAERKRVEAELR 342

Query: 317 EGENLTPETVDKCPIPFFVY--SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
             E      ++   +  + +    G +   + +   +   +     + +  + T    P 
Sbjct: 343 ASEERLRSALEASRMGTWDWNIETGQI-QWSANLEAMFGLEP-GAFDGSFEMFTRFLHPD 400

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
             D   +  V    S             + +                    + +   G +
Sbjct: 401 DRD-RVLAAVEQAISTGEDYTIE---FRVVYPNGTVRWALSQGKVFYGLNGQPVRMTGND 456

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR--EGIILSTNRAVSKLFGYPVEDI 492
            +  + +  +  ++    +   + E   D +  +    E      + A  +L+G   +++
Sbjct: 457 IDITERKQAEIALQESESRFRQLTENI-DAVFWMREVTESRASYVSPAYERLWGLNPQEL 515

Query: 493 L--RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
              ++ +  ++  +    +        +       ++         ++  +      L  
Sbjct: 516 YENQQAWVNYIHPDDREPVYRAFQAKAAEG---LFDEEYRIILPNGQIRWVHDRCFPLRN 572

Query: 551 SSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
            +     ++    DI++ K  +  L  +++       +  D  A
Sbjct: 573 EARALYRFTGIAEDITDRKGSEQTLQKSEERFRTSVENMLDCFA 616



 Score = 60.0 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 60/186 (32%), Gaps = 9/186 (4%)

Query: 54   FTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM 113
            F D ++         DSE  F  +      +  W  D HG++   +    +  G    +M
Sbjct: 1275 FYDLSERLHYEAALRDSEERFR-NLADHMSQLAWMADEHGWIFWYNRRWFEYTGTTLEEM 1333

Query: 114  IGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPIEGTN-LYVPIDLAALPIYS- 170
             G     V    H+D    HI    +    W      +P+ G +  Y      A+PI   
Sbjct: 1334 QGWGWQAVHHPDHVDRVVQHIRHCFEMGEVWED---TFPLRGHDGQYRWFLSRAIPIRDQ 1390

Query: 171  RNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP 230
             + +    R FG               +RL ++        +  + ++ E   I S +  
Sbjct: 1391 ESGQI--LRWFGTNTDITERKQAEQERQRLLEQEQAARAEAERANQIKDEFLAILSHELR 1448

Query: 231  PPHLRM 236
             P   +
Sbjct: 1449 SPLNPI 1454



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 48/420 (11%), Positives = 114/420 (27%), Gaps = 31/420 (7%)

Query: 49   FEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGN 108
                      + + +      S NTF            + IDA   L ++S    K   N
Sbjct: 1140 ETAERTWAAVERARAEMLLRASHNTFRHLVENSPFG-VYVIDADFRLAQVSAGAQKVFEN 1198

Query: 109  YAFKMIGMRLCDVSDILHIDPNN-----HIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDL 163
                +IG    +V  I+ ++P       H    LK    ++  + +   + T+     D 
Sbjct: 1199 VRP-LIGRDFAEVLQIIWLEPFASEAITHFRHTLKTGEPYHAPSIVERRQDTDEVESYDW 1257

Query: 164  AALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKE-KY 222
                I   +  F     F   +         A  +  +++F +L +     + +  E  +
Sbjct: 1258 KIERITLPDGRFGVVCHF---YDLSERLHYEAALRDSEERFRNLADHMSQLAWMADEHGW 1314

Query: 223  DIFSQQSPPPHLRMK-NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDF--HTIN 279
              +  +    +      ++        H  D +      +    E     ++ F     +
Sbjct: 1315 IFWYNRRWFEYTGTTLEEMQGWGWQAVHHPDHVDRVVQHIRHCFEMGEVWEDTFPLRGHD 1374

Query: 280  LNQYTKKQYFGTLQN-NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH 338
                        +++  S +   +       +     ++      E              
Sbjct: 1375 GQYRWFLSRAIPIRDQESGQILRWFGTNTDITERKQAEQERQRLLEQEQA-----ARAEA 1429

Query: 339  GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398
                     FL +  ++    +    G + LL + K       + +         I  +A
Sbjct: 1430 ERANQIKDEFLAILSHELRSPLNPILGWTQLLQSRKFDPTKTNEALA-------TIERNA 1482

Query: 399  RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458
            +L T   +      +      +       +P +     +      +     + M L ++L
Sbjct: 1483 KLQTQLIDD----LLDIAKILRGKLTMNVVPVDLAFVIEAAIDTMRTAAVAKEMTLHAVL 1538


>gi|229515723|ref|ZP_04405182.1| hypothetical protein VCB_003381 [Vibrio cholerae TMA 21]
 gi|229347492|gb|EEO12452.1| hypothetical protein VCB_003381 [Vibrio cholerae TMA 21]
          Length = 1331

 Score =  362 bits (928), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 97/384 (25%), Positives = 172/384 (44%), Gaps = 10/384 (2%)

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
              +       R+ +RK+  +      IL+AT + +  ++ +G  L+ N     L G   
Sbjct: 450 AIQLSQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTVNAKFLDLMGLYN 509

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
            +++ K                    +      Q  E   +  T  ++ + +        
Sbjct: 510 NEVIDKEPQEIFPAEVAERFAAAHQVLTQQQSSQNYEVSLVDYTGVQREMLVYEASFSDR 569

Query: 550 FS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
               +     + D++E K+ +++L  AK+ A+  S  K DFLA +SHEIRTP+ AI+G +
Sbjct: 570 ADKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMA 629

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
            +  N            +Y   I+ S   +L I+ND+LD SK+E+GK+N+     +LD+ 
Sbjct: 630 HLALNTPLDTT----QRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDV 685

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI- 725
           +    ++V L A EK I        +IP  ++ D   + Q+ +N+  NA+ FT  G  + 
Sbjct: 686 LDNVTAVVSLKAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVL 745

Query: 726 --IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
              +S  +     +   V+DTG+G+   +L+     F Q  NS   +  GTGLGL ++K 
Sbjct: 746 SARVSQLNEQQVTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQ 805

Query: 784 MVDANMGKFYIFSTPAKGTLIEII 807
           +V+   G+  + S   KG+  E  
Sbjct: 806 LVELMGGQITVHSEEGKGSTFEFS 829



 Score = 44.2 bits (103), Expect = 0.093,   Method: Composition-based stats.
 Identities = 13/143 (9%), Positives = 43/143 (30%), Gaps = 3/143 (2%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + + A G    ++ +    +G Y  ++I     ++      +       +L +Q +   
Sbjct: 485 MYCLSADGKFLTVNAKFLDLMGLYNNEVIDKEPQEIFPAEVAERFAAAHQVLTQQQSSQN 544

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
                 ++ T +   + +       R  + +G    GI+       +     ++  +   
Sbjct: 545 YEVSL-VDYTGVQREMLVYEASFSDRADKVNGI--VGILLDMTERKEMEDELRKAKEAAD 601

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQ 228
            + + K    +    +       
Sbjct: 602 AMSQAKGDFLANMSHEIRTPMNA 624



 Score = 41.9 bits (97), Expect = 0.50,   Method: Composition-based stats.
 Identities = 22/228 (9%), Positives = 56/228 (24%), Gaps = 33/228 (14%)

Query: 286 KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYA 344
                 L + S       +            E   L  E +D  P P   + + G     
Sbjct: 438 HWLSQMLDDLSVAIQLSQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTV 497

Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
           N  FL L    + + I+              ++             +   + +  +  + 
Sbjct: 498 NAKFLDLMGLYNNEVIDKEP------QEIFPAEVAERFAAAHQVLTQQQSSQNYEVSLVD 551

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI------- 457
           +       + +      ++  +     GI  +  + +  + ++        ++       
Sbjct: 552 YTGVQREMLVYEASFS-DRADKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDF 610

Query: 458 LEATS-------DGIAI---------INREGI--ILSTNRAVSKLFGY 487
           L   S       + I           ++      +   N +   L G 
Sbjct: 611 LANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINESAKNLLGI 658


>gi|239787541|emb|CAX84010.1| Sensor protein [uncultured bacterium]
          Length = 834

 Score =  362 bits (928), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 142/758 (18%), Positives = 267/758 (35%), Gaps = 58/758 (7%)

Query: 91  AHGYLKEISEELPKTIGNYAF-KMIGMRLCDVSD-ILHIDPNNHIGDLL--KRQNTWYGK 146
             G +   +       G     ++ G  L ++     H D    I +L    R+     +
Sbjct: 96  REGKVLYANSAAATLFGAEKMYEIEGRPLLELFHLQSHADVVLRIDELKVGARRVLPSAE 155

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF-------GIVHVNRVDNDPRALGKR 199
             +  ++GT L V                +G   F        +V             ++
Sbjct: 156 LKVQRLDGTQLDVE-------------AVTGLSSFQGSVAYQTVVRDISKRRQVEEHLRK 202

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
           L +             +  K   +  + +         ++V  L        ++      
Sbjct: 203 LSRAVEQSASSVC--ITDTKGTIEFVNPRFAELSGYDADEVVGLNPRILKSGELGSEAYN 260

Query: 260 PLLTSEESSLPEQEDFH--TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
            L ++  +    + +FH    + + Y        ++N       +L+  +  S     +E
Sbjct: 261 DLWSTISAGREWRGEFHNRRKDGSLYWVSASISPVRNAEGAITHFLAIEDDISGQKRSEE 320

Query: 318 GEN-----------LTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGG 365
                            + ++     F +      +   N ++L         ++     
Sbjct: 321 LLREARDWAAGAQERLTDAIESISEAFILCDADDRVILWNANYLDFYP-----ELRTVLD 375

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF---IPFEKAN 422
           +        L    A        +         RL   +    N              + 
Sbjct: 376 VGVPF--EDLVRAFAATGAPADAATDPEAWIRKRLIQHRLADGNPHVQRLGDGRWLLVSE 433

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
                     +  +  +    ++ +     +    +EA   G+   N +   +     + 
Sbjct: 434 NRTSEGGIVSVRTDITERMQAEKALRRSEERYELAVEAGKVGVWDWNIKTGEMYIAPKLK 493

Query: 483 KLFGYPVEDILRKP--FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
            + GY   ++  +   +   +       +       L     +  E       K      
Sbjct: 494 AMLGYEDTEVPNRFEAWMELVHAEDRPHVKAATAAHLEGRTER-HEVRYRRVHKNGSSYW 552

Query: 541 LRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
            +        +       + T  DI +    +  L  AK  AE  +  K++FLA +SHE+
Sbjct: 553 FKASGVVQRDTQGRPERMAGTDADIIDHVLTEAALRAAKDNAEVANRAKTEFLANMSHEL 612

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTPL +IIGFS+++ NQ FGP+G P Y+EYA  I+ +G+ +L ++ND+LD+S+IE   ++
Sbjct: 613 RTPLNSIIGFSDILVNQSFGPMGVPEYVEYARDINSAGSHLLSLINDILDVSRIEVEALS 672

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNA 715
           L+ + +      +    LV   A   ++ +        P  + AD R VKQ+ LN+L+N+
Sbjct: 673 LNEQRIDAAHMANSCQRLVLDRAKRAKLNLVLDMPKQFPAALYADERRVKQVLLNLLANS 732

Query: 716 IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           I FT  GG + +          +  V DTG+G+   ++E AM  FGQ+ +S   R EG G
Sbjct: 733 IKFTEPGGTVTLKGMLDEEGRFVFAVADTGIGIAPEDIEAAMSTFGQVDSSFTRRYEGAG 792

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
           LGLPL+K +V+ + G   + S P  GT + I FP   T
Sbjct: 793 LGLPLSKKLVELHGGGLSLESQPGVGTTVTIRFPKERT 830



 Score =  123 bits (310), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 47/315 (14%), Positives = 104/315 (33%), Gaps = 18/315 (5%)

Query: 285 KKQYFGTLQNNSKESFEYLSHRNHPSL--SAYFDEGENLTPETVDKCPIPFFVYSHGNLF 342
            + +F  L++    +   L      +       D G     + ++  P    V+  G + 
Sbjct: 42  AEPFFERLEDVLSATGITLLVVIGLAFFGLRAIDAGRRQFQDLIELAPDAILVHREGKVL 101

Query: 343 YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT 402
           YAN +   L   + + +IE    L   L   +   +  ++   L    R  +  SA L  
Sbjct: 102 YANSAAATLFGAEKMYEIEGRPLLE--LFHLQSHADVVLRIDELKVGARRVLP-SAELKV 158

Query: 403 IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
            + +      +        + F  ++    +  +    R  +  +     +L   +E ++
Sbjct: 159 QRLDGTQ---LDVEAVTGLSSFQGSVAYQTVVRDISKRRQVEEHLR----KLSRAVEQSA 211

Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522
             + I + +G I   N   ++L GY  ++++     +       S   + L   +S    
Sbjct: 212 SSVCITDTKGTIEFVNPRFAELSGYDADEVVGLNPRILKSGELGSEAYNDLWSTISAGRE 271

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIA 578
                      K+  L  +   I  +  +      +     DIS  K+ +  L  A+  A
Sbjct: 272 WRG--EFHNRRKDGSLYWVSASISPVRNAEGAITHFLAIEDDISGQKRSEELLREARDWA 329

Query: 579 EKESSHKSDFLARVS 593
                  +D +  +S
Sbjct: 330 AGAQERLTDAIESIS 344



 Score =  101 bits (251), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 36/385 (9%), Positives = 92/385 (23%), Gaps = 30/385 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKRQNTWYGKT 147
            D  G ++ ++    +  G  A +++G+    + S  L  +  N +   +     W G+ 
Sbjct: 217 TDTKGTIEFVNPRFAELSGYDADEVVGLNPRILKSGELGSEAYNDLWSTISAGREWRGEF 276

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL------- 200
                +G+     +  +  P+ +     + F    I            L +         
Sbjct: 277 HNRRKDGSLY--WVSASISPVRNAEGAITHF--LAIEDDISGQKRSEELLREARDWAAGA 332

Query: 201 -DKKFSHLHEIKKGHSSVEKEKYDIFSQQ---SPPPHLRMKNKVSSLTEYYAHKDDVLKT 256
            ++    +  I +     + +   I          P LR    V    E           
Sbjct: 333 QERLTDAIESISEAFILCDADDRVILWNANYLDFYPELRTVLDVGVPFEDLVRAFAATGA 392

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT-------LQNNSKESFEYLSHRNHP 309
                   E             + N + ++   G          +               
Sbjct: 393 PADAATDPEAWIRKRLIQHRLADGNPHVQRLGDGRWLLVSENRTSEGGIVSVRTDITERM 452

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
                    E      V+   +  + ++   G + Y  P    +  Y+  + +       
Sbjct: 453 QAEKALRRSEERYELAVEAGKVGVWDWNIKTGEM-YIAPKLKAMLGYEDTE-VPNRFEAW 510

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
             L   +   +           +        R   +  N  +          + +     
Sbjct: 511 MELVHAEDRPHVK--AATAAHLEGRTERHEVRYRRVHKNGSSY-WFKASGVVQRDTQGRP 567

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVM 452
               G + + +D  + +  +     
Sbjct: 568 ERMAGTDADIIDHVLTEAALRAAKD 592


>gi|149174262|ref|ZP_01852889.1| probable sensor/response regulator hybrid [Planctomyces maris DSM
            8797]
 gi|148846807|gb|EDL61143.1| probable sensor/response regulator hybrid [Planctomyces maris DSM
            8797]
          Length = 2453

 Score =  362 bits (928), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 110/641 (17%), Positives = 244/641 (38%), Gaps = 33/641 (5%)

Query: 189  VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK-----NKVSSL 243
                  A  +  + +F  L +     + +  EK  IF                       
Sbjct: 1665 ERARAEAALRESEARFRDLADNMSQFAWMADEKGFIFWYNQRWFEYTGTTLEEMQGWGWK 1724

Query: 244  TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303
              ++    D +         + E+   +     +              +++ S +   + 
Sbjct: 1725 KVHHPEHVDRVVKRIQHSWDTGET-WEDTFPIRSKEGEFRWFLSRAVPIRDASGKILRWF 1783

Query: 304  SHRNHPSLSAYFDEGENLTPETVDKCPIP----FFVYSHGNL-FYANPSFLLLTKYKSVD 358
                  + +   ++    +   +           + +       Y +     L+  +   
Sbjct: 1784 GTNTDITSTREQEQRVRASEARLRLAMQAANLSLWQWDIDKDKIYWSHDSHELSSMEPRQ 1843

Query: 359  DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
             +                ++       L           A   T + +      +    +
Sbjct: 1844 AVGGLQH----FLNLVHRNDREAVEHSLRSCLSNGKPFQAEFRT-RKSENTYAWVLSTAY 1898

Query: 419  EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
               +    +    G+  +  + + ++ ++++   +L +  E+   G+  I+      + +
Sbjct: 1899 LTTDSTDNSTVMVGVNLDITERKKSELEIKLSEERLRNAAESAGFGMLHIDLLEETTAFS 1958

Query: 479  RAVSKLFGYP---VEDILRKPFTVFLEQNTPSVMNHYLTE--ILSLDLRQTLEKITLGST 533
              + ++ G P     ++       ++     S    +L E   L     Q+L+   +   
Sbjct: 1959 PEMKRMLGLPDNAENNLKFGEVPDWIHPKDRSAYRKHLQESAALPEGKNQSLDHRIIRPD 2018

Query: 534  KEEKLLSLRIIIKKLPFSSC-----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
             E + + L          S         T+ DI+  +Q +  L  A+++AE  +  KS F
Sbjct: 2019 GETRWVRLHARPVFTGKGSRRKATQLIGTLLDITSQRQFEQSLKEARQMAEAANESKSAF 2078

Query: 589  LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
            LA +SHEIRTP+TAI+G+ + + ++    + +     Y + + R+G  +LDI+ND+LD+S
Sbjct: 2079 LANMSHEIRTPMTAIMGYID-LIDEL---IDHKIATAYLSTVRRNGEFLLDIINDILDLS 2134

Query: 649  KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQI 707
            KIE+GK+++  E  S  + + +  S++ + A E R+ +   +   IP  I +D + +KQI
Sbjct: 2135 KIEAGKLDIIRERFSPHQLLEDVCSIMDVRAAENRLELDIFYYGKIPAEIESDPKRLKQI 2194

Query: 708  ALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
             +N++ NAI FT  G  + I  +     ++   + DTG+G+T  + ++  +PF Q  ++ 
Sbjct: 2195 LINLVGNAIKFTMKGS-VKIFVSCNDQ-QLQFIIVDTGIGITTRQQKRLFRPFSQGDHTV 2252

Query: 768  QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
                 GTGLGL +++ + +   G+  + S   KG+   +  
Sbjct: 2253 NREFGGTGLGLAISQRLANMLGGEICVESEKDKGSKFTVTI 2293



 Score =  121 bits (304), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 44/303 (14%), Positives = 95/303 (31%), Gaps = 8/303 (2%)

Query: 279  NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH 338
                  +      LQ  +      +      +  A  +          ++  +   +   
Sbjct: 1214 REAYQWRPDELKLLQEITNRLCIRIERARAEAELADREAHLRRVIN--NQLGLVGVIGRD 1271

Query: 339  GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398
            G L   +   + +      D I               + +  ++  M        +    
Sbjct: 1272 GRLLEVDDDSMKIAGLTREDVI-GKHFAECAWWTYDEAVSQKMRESMQKAFAGEVVRYDV 1330

Query: 399  RLHTIQWNR-ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
             L        E  L + F+     N+  E         +  +    +   +    +L S+
Sbjct: 1331 PLFAAGLGGAERRLMIDFMMAPVFNKNGEVEYLIPSGVDISERVAVENLHKETAARLESM 1390

Query: 458  LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
              +  DG+  IN  G + S N A   LFGY +E++  +   + +     S  + YL   L
Sbjct: 1391 FNSAVDGMITINAAGNMDSINPAALDLFGYELEELQGQNVNMLMPDPWHSEHDSYLNAYL 1450

Query: 518  SLDLRQTLE--KITLGSTKEEKLLSLRIIIKK--LPFSSCYSLTMHDISEWKQEKNKLSH 573
                 + +   +  LG  K+    ++ + + +  +     +  T+ DISE KQ +  L+ 
Sbjct: 1451 KTGQAKIIGSKREVLGLRKDGSTFAMELAVSEAYMRGEILFVGTVRDISERKQRELNLAF 1510

Query: 574  AKK 576
              +
Sbjct: 1511 IDE 1513



 Score = 99.7 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 67/559 (11%), Positives = 166/559 (29%), Gaps = 64/559 (11%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR--QNTWYGK 146
            I   G L E+ ++  K  G     +IG    + +       +  +   ++   Q  + G+
Sbjct: 1268 IGRDGRLLEVDDDSMKIAGLTREDVIGKHFAECA---WWTYDEAVSQKMRESMQKAFAGE 1324

Query: 147  TTLWPI-------EGTNLYVPIDLAALPIYSRNREFSGF--RGFGIVHVNRVDNDPRALG 197
               + +        G    + ID    P++++N E       G  I     V+N  +   
Sbjct: 1325 VVRYDVPLFAAGLGGAERRLMIDFMMAPVFNKNGEVEYLIPSGVDISERVAVENLHKETA 1384

Query: 198  KRLDKKFSHLHE------IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK- 250
             RL+  F+   +            S+     D+F  +      +  N +     +  H  
Sbjct: 1385 ARLESMFNSAVDGMITINAAGNMDSINPAALDLFGYELEELQGQNVNMLMPDPWHSEHDS 1444

Query: 251  --DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ----------YFGTLQNNSKE 298
              +  LKT +  ++ S+   L  ++D  T  +     +               +    + 
Sbjct: 1445 YLNAYLKTGQAKIIGSKREVLGLRKDGSTFAMELAVSEAYMRGEILFVGTVRDISERKQR 1504

Query: 299  SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVD 358
                        L       E +  +T  +      V     +     + +    Y++ +
Sbjct: 1505 ELNLAFIDELQLLLGAPLLIEEIMQQTCARITDFLGVSRCLLIELDTEAEIADVVYEAHE 1564

Query: 359  ----DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
                DI     ++  L+  +     A +P+++  +      +    +    +  + L + 
Sbjct: 1565 SGLSDISGRHTITNFLEEQEQEPLLAGQPILIGDTQNHHRISKRTKNFAALDIGSLLLIP 1624

Query: 415  FI-------PFEKANQFPENMPQNGI---------EPEDVDTRINKRKMEIEVMQLCSIL 458
            F+            NQ P       I             ++    +  +     +   + 
Sbjct: 1625 FVSEKRLKFVLTICNQQPCQWQAVVIDLLQELTPRIFVRLERARAEAALRESEARFRDLA 1684

Query: 459  EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
            +  S    + + +G I   N+   +  G  +E++    +           +   +     
Sbjct: 1685 DNMSQFAWMADEKGFIFWYNQRWFEYTGTTLEEMQGWGWKKVHHPEHVDRVVKRIQHSWD 1744

Query: 519  LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHA 574
                +T E      +KE +          +  +S     +  T  DI+  ++++ ++  +
Sbjct: 1745 TG--ETWEDTFPIRSKEGEFRWFLSRAVPIRDASGKILRWFGTNTDITSTREQEQRVRAS 1802

Query: 575  KKIAEKESSHKSDFLARVS 593
            +              A +S
Sbjct: 1803 EARLRLAMQA-----ANLS 1816



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/416 (10%), Positives = 94/416 (22%), Gaps = 20/416 (4%)

Query: 59   QESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRL 118
            + + +     +SE  F  D      +F W  D  G++   ++   +  G    +M G   
Sbjct: 1665 ERARAEAALRESEARFR-DLADNMSQFAWMADEKGFIFWYNQRWFEYTGTTLEEMQGWGW 1723

Query: 119  CDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSG 177
              V    H+D     I        TW     +   EG   +      A+PI   + +   
Sbjct: 1724 KKVHHPEHVDRVVKRIQHSWDTGETWEDTFPIRSKEGE--FRWFLSRAVPIRDASGKI-- 1779

Query: 178  FRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ------SPP 231
             R FG         +     +  + +     +             D           S  
Sbjct: 1780 LRWFGTNTDITSTREQEQRVRASEARLRLAMQAANLSLWQWDIDKDKIYWSHDSHELSSM 1839

Query: 232  PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291
               +    +          D            S       +                   
Sbjct: 1840 EPRQAVGGLQHFLNLVHRNDREAVEHSLRSCLSNGKPFQAEFRTRKSENTYAWVLSTAYL 1899

Query: 292  LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP-----FFVYSHGNLFYANP 346
              +++  S   +      +     +    L+ E +             +         +P
Sbjct: 1900 TTDSTDNSTVMVGVNLDITERKKSELEIKLSEERLRNAAESAGFGMLHIDLLEETTAFSP 1959

Query: 347  SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
                +       +  +  G       PK         +    +       S     I+ +
Sbjct: 1960 EMKRMLGLPDNAENNLKFGEVPDWIHPKDRSAYRKH-LQESAALPEGKNQSLDHRIIRPD 2018

Query: 407  RENSLA-MTFIPF-EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
             E     +   P         +     G   +    R  ++ ++       +  E+
Sbjct: 2019 GETRWVRLHARPVFTGKGSRRKATQLIGTLLDITSQRQFEQSLKEARQMAEAANES 2074



 Score = 86.6 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 53/543 (9%), Positives = 131/543 (24%), Gaps = 66/543 (12%)

Query: 86   TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD-LLKRQNTWY 144
             W  DA G + E S    +  G    +  G    +                 +    T+ 
Sbjct: 841  VWMTDAAGIVVEDSPSWREFTGQTYEEWKGTGWLNAIHPDDQQATIQAWQTAVSNIETFS 900

Query: 145  GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
             +  LW  +G   +  +    +P    +      R  G+        + + +     ++ 
Sbjct: 901  VEYRLWHQQGE--WRWMHARGVPQKLPDGSI--LRWIGMNTDITEQKEAQRVILESSRQL 956

Query: 205  S----------HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254
                          +      ++  E   I+        +     +              
Sbjct: 957  QLGVEIANLGLARVDYANNCITLTPEAAAIYGLGYQEILITRDEMLDLYHPEDRQDAADQ 1016

Query: 255  KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
                          L  +      +              + S E    +           
Sbjct: 1017 IQACIQECGDGRCDL--EHRLILPSGEIRWISARKQIYFDRSVEPAVPVYATLVAQDITI 1074

Query: 315  FDEGENLTPETVDKCPIPFFVYSHGNLFYA----NPSFLLLTKYKSVDDIEIAGGLSTLL 370
                E       D       +Y+  +L          +L L +   V+    A     L 
Sbjct: 1075 SKREELNLAFLSDLQTQLIPLYNVDDLMEVATRETAKYLDLFRCLIVEFDANADYADILF 1134

Query: 371  DAPKLSDNN------------AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
            +    S ++              +   L   ++  I+ +          EN  ++    +
Sbjct: 1135 EHHDDSLHSIVGKHRVRDFHTESERQKLLAGEQFFISDTLYPEQDSRIAENFQSINVRAY 1194

Query: 419  E------------------------KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
                                     + ++              ++    + ++      L
Sbjct: 1195 CNSAYITPQGIKFVISAVKREAYQWRPDELKLLQEITNRLCIRIERARAEAELADREAHL 1254

Query: 455  CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
              ++      + +I R+G +L  +    K+ G   ED++ K F           ++  + 
Sbjct: 1255 RRVINNQLGLVGVIGRDGRLLEVDDDSMKIAGLTREDVIGKHFAECAWWTYDEAVSQKMR 1314

Query: 515  EILSLDLRQTLEKITL-----GSTKEEKLLSLRIIIKKLPFSSCYSLTM----HDISEWK 565
            E +       + +  +     G    E+ L +  ++  +   +     +     DISE  
Sbjct: 1315 ESMQKAFAGEVVRYDVPLFAAGLGGAERRLMIDFMMAPVFNKNGEVEYLIPSGVDISERV 1374

Query: 566  QEK 568
              +
Sbjct: 1375 AVE 1377



 Score = 85.8 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 55/468 (11%), Positives = 141/468 (30%), Gaps = 38/468 (8%)

Query: 184  VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL 243
            +   R         ++ D+    +  ++      E E   +         ++ +    S 
Sbjct: 577  IKTRRKVQQQHLTIRKGDQIQEVMITVQPMPRLGEDEGLFMVVFHDVGLPVKKEVNEESP 636

Query: 244  TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303
             E   H D ++   +Y L  S +      +D    +    +  +   ++    + + E L
Sbjct: 637  RETVPHADAIIAQLEYELQCSRDELEKTLQDMDVAHEELKSTNEELLSMNEELQSANEEL 696

Query: 304  SHRNHPSLSAY--FDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDI 360
                    +         +     +    I   F+     +    P+   +      D  
Sbjct: 697  ETSKEEITAVSNSVARTNSDLENLLRSTQIATVFLDDELLIRSFTPAITEIYSLIHTDIG 756

Query: 361  EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
                    L++      +         R  +         HT+  +         +P++ 
Sbjct: 757  RPLERFVPLVEEMPPLPDP--------RKLQQSHPIE---HTVVADSGKVYIRRVLPYQS 805

Query: 421  ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
             +   E +    I+           ++         +++A+S  + + +  GI++  + +
Sbjct: 806  YSGQNEGIVVTFIDV---------SELHNSQELFQLLIDASSQIVWMTDAAGIVVEDSPS 856

Query: 481  VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
              +  G   E+     +   +  +            +S     ++E        E + + 
Sbjct: 857  WREFTGQTYEEWKGTGWLNAIHPDDQQATIQAWQTAVSNIETFSVEYRLWHQQGEWRWMH 916

Query: 541  LRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
             R + +KLP  S   +     DI+E K+ +  +  + +  +      +  LARV  +   
Sbjct: 917  ARGVPQKLPDGSILRWIGMNTDITEQKEAQRVILESSRQLQLGVEIANLGLARV--DYAN 974

Query: 599  P---LT----AI--IGFSEVI--KNQRFGPLGNPRYIEYANYIDRSGN 635
                LT    AI  +G+ E++  +++           + A+ I     
Sbjct: 975  NCITLTPEAAAIYGLGYQEILITRDEMLDLYHPEDRQDAADQIQACIQ 1022



 Score = 78.9 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 54/404 (13%), Positives = 120/404 (29%), Gaps = 21/404 (5%)

Query: 188  RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247
                +  A+   + +  S L  + +          D    +S  P +     +       
Sbjct: 698  TSKEEITAVSNSVARTNSDLENLLRSTQIATVFLDDELLIRSFTPAITEIYSLIHTDIGR 757

Query: 248  AHKDDVLKTEKYPLLTSEESSLPEQEDFHTI-NLNQYTKKQYFGTLQNNSKESFEYLSHR 306
              +  V   E+ P L             HT+   +     +     Q+ S ++   +   
Sbjct: 758  PLERFVPLVEEMPPLPDPRKLQQSHPIEHTVVADSGKVYIRRVLPYQSYSGQNEGIVVTF 817

Query: 307  NHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGG 365
               S      E   L    +D      ++    G +   +PS+   T     ++ +  G 
Sbjct: 818  IDVSELHNSQE---LFQLLIDASSQIVWMTDAAGIVVEDSPSWREFTGQT-YEEWKGTGW 873

Query: 366  LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
            L+ +    +      I+      S+    +   RL   Q        M      +     
Sbjct: 874  LNAIHPDDQ---QATIQAWQTAVSNIETFSVEYRLWHQQ---GEWRWMHARGVPQKLPDG 927

Query: 426  ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
              +   G+  +  + +  +R +     QL   +E  + G+A ++     ++     + ++
Sbjct: 928  SILRWIGMNTDITEQKEAQRVILESSRQLQLGVEIANLGLARVDYANNCITLTPEAAAIY 987

Query: 486  GYPVEDILRKPFTV--FLEQNTPSVMNHYLTEILS--LDLRQTLEKITLGSTKEEKLLSL 541
            G   ++IL     +               +   +    D R  LE   +  + E + +S 
Sbjct: 988  GLGYQEILITRDEMLDLYHPEDRQDAADQIQACIQECGDGRCDLEHRLILPSGEIRWISA 1047

Query: 542  RIIIKKLPFSSCYS-----LTMHDISEWKQEKNKLSHAKKIAEK 580
            R  I               L   DI+  K+E+  L+    +  +
Sbjct: 1048 RKQIYFDRSVEPAVPVYATLVAQDITISKREELNLAFLSDLQTQ 1091


>gi|254286552|ref|ZP_04961508.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae AM-19226]
 gi|150423310|gb|EDN15255.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae AM-19226]
          Length = 1331

 Score =  362 bits (928), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 97/384 (25%), Positives = 172/384 (44%), Gaps = 10/384 (2%)

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
              +       R+ +RK+  +      IL+AT + +  ++ +G  L+ N     L G   
Sbjct: 450 AIQLSQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTVNAKFLDLMGLYN 509

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
            +++ K                    +      Q  E   +  T  ++ + +        
Sbjct: 510 NEVIDKEPQEIFPAEVAERFAAAHQVLTQQQSSQNYEVSLVDYTGVQREMLVYEASFSDR 569

Query: 550 FS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
               +     + D++E K+ +++L  AK+ A+  S  K DFLA +SHEIRTP+ AI+G +
Sbjct: 570 ADKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMA 629

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
            +  N            +Y   I+ S   +L I+ND+LD SK+E+GK+N+     +LD+ 
Sbjct: 630 HLALNTPLDTT----QRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDV 685

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI- 725
           +    ++V L A EK I        +IP  ++ D   + Q+ +N+  NA+ FT  G  + 
Sbjct: 686 LDNVTAVVSLKAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVL 745

Query: 726 --IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
              +S  +     +   V+DTG+G+   +L+     F Q  NS   +  GTGLGL ++K 
Sbjct: 746 SARVSQLNEQQVTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQ 805

Query: 784 MVDANMGKFYIFSTPAKGTLIEII 807
           +V+   G+  + S   KG+  E  
Sbjct: 806 LVELMGGQITVHSEEGKGSTFEFS 829



 Score = 44.2 bits (103), Expect = 0.092,   Method: Composition-based stats.
 Identities = 13/143 (9%), Positives = 43/143 (30%), Gaps = 3/143 (2%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + + A G    ++ +    +G Y  ++I     ++      +       +L +Q +   
Sbjct: 485 MYCLSADGKFLTVNAKFLDLMGLYNNEVIDKEPQEIFPAEVAERFAAAHQVLTQQQSSQN 544

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
                 ++ T +   + +       R  + +G    GI+       +     ++  +   
Sbjct: 545 YEVSL-VDYTGVQREMLVYEASFSDRADKVNGI--VGILLDMTERKEMEDELRKAKEAAD 601

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQ 228
            + + K    +    +       
Sbjct: 602 AMSQAKGDFLANMSHEIRTPMNA 624



 Score = 41.6 bits (96), Expect = 0.51,   Method: Composition-based stats.
 Identities = 22/228 (9%), Positives = 56/228 (24%), Gaps = 33/228 (14%)

Query: 286 KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYA 344
                 L + S       +            E   L  E +D  P P   + + G     
Sbjct: 438 HWLSQMLDDLSVAIQLSQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTV 497

Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
           N  FL L    + + I+              ++             +   + +  +  + 
Sbjct: 498 NAKFLDLMGLYNNEVIDKEP------QEIFPAEVAERFAAAHQVLTQQQSSQNYEVSLVD 551

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI------- 457
           +       + +      ++  +     GI  +  + +  + ++        ++       
Sbjct: 552 YTGVQREMLVYEASFS-DRADKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDF 610

Query: 458 LEATS-------DGIAI---------INREGI--ILSTNRAVSKLFGY 487
           L   S       + I           ++      +   N +   L G 
Sbjct: 611 LANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINESAKNLLGI 658


>gi|24372170|ref|NP_716212.1| sensory box histidine kinase/response regulator [Shewanella
           oneidensis MR-1]
 gi|24346071|gb|AAN53657.1|AE015504_7 sensory box histidine kinase/response regulator [Shewanella
           oneidensis MR-1]
          Length = 1188

 Score =  361 bits (927), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 129/593 (21%), Positives = 216/593 (36%), Gaps = 44/593 (7%)

Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291
           P  R+ + +   ++      + +     P          E + +           +    
Sbjct: 333 PASRLLSHLEGCSQEPRKPPEKITPGWEPWFLLVSRIFEENKQYTH------HLAEQNKR 386

Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLL 350
           L        E L          Y      L    +D  P    F    GN    N +   
Sbjct: 387 LDKLVARRTERLKDATERREREYA-----LLRSLLDSIPEAIVFKDKEGNYLGCNKAAER 441

Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
           +  Y   + I   G  S  L +P++      +   +   DRT +    R           
Sbjct: 442 MLGYTESEMI---GLSSEDLTSPEMGIRIRAEDAQIL-KDRTPL----RYQEKVELAGKP 493

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA--II 468
           + +  +     N+  E      +  +      +  ++ +   +    ++A  DG+    +
Sbjct: 494 VLLDTLKLPFYNRRGELQGLIAVWRDVTREYESAEQLRLSEERYHLAMDAVEDGLWDWYL 553

Query: 469 NREGIILSTNRAVSKLFGYPVED--ILRKPFTVFLEQNTPSVMNHYLTEILSLDL-RQTL 525
           + E II   N +   + GY   +   L          +    +  Y  + L   +    +
Sbjct: 554 DSEHII--CNPSYYSMLGYKPNEFPALVSAIDQLTHPDDRIRVEEYRNQYLENPVDAYEI 611

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKES 582
           E   LG       +  R  + +            T  DI+  K  +  L  AK+ AE  +
Sbjct: 612 EFRILGKNSSYHWVLSRGRVVEFTTDGQPKRMVGTHKDITRHKSNEVALLEAKQDAELAN 671

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
            +KS+FLA +SHEIRTP+ AIIG  ++ +          +  +Y      S   +L I+N
Sbjct: 672 LYKSEFLANMSHEIRTPMNAIIGMLQLAQRTSLTA----QQKDYLEKAGFSAQSLLRIIN 727

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADL 701
           D+LD SKIE+GK+ L   P  LD+ +  A+ L  L A E+ + +          IL  D 
Sbjct: 728 DILDFSKIEAGKLELERVPFPLDKVLDHALDLNALKAQEQGVELLLYAPVTAGLILKGDP 787

Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE------VILRVRDTGVGMTNYELEK 755
             + Q+ +N+LSNA+ FT SG    I        E      +   VRDTG+G++  + EK
Sbjct: 788 LRLGQVLINLLSNAVKFTQSG---EIELGCEDVGERDHRITLKFWVRDTGIGISKDQQEK 844

Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
               F Q   S   +  GTGLGL ++K +V    GK  + S    G+      
Sbjct: 845 LFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGKMQVQSELGVGSTFSFTI 897



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 48/347 (13%), Positives = 101/347 (29%), Gaps = 30/347 (8%)

Query: 9   NPEDILTSNCKGNTQDLSK--KKIDNGFE-----TEKSKKENPCHDSFEQSNFTDQNQES 61
           +P   L S+ +G +Q+  K  +KI  G+E       +  +EN  +           ++  
Sbjct: 332 SPASRLLSHLEGCSQEPRKPPEKITPGWEPWFLLVSRIFEENKQYTHHLAEQNKRLDKLV 391

Query: 62  VSNTNYLDSENTFVFDP--------IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM 113
              T  L                          +  D  G     ++   + +G    +M
Sbjct: 392 ARRTERLKDATERREREYALLRSLLDSIPEAIVFK-DKEGNYLGCNKAAERMLGYTESEM 450

Query: 114 IGMRLCDVSDIL-HIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172
           IG+   D++     I        +LK +     +     +E     V +D   LP Y+R 
Sbjct: 451 IGLSSEDLTSPEMGIRIRAEDAQILKDRTPLRYQE---KVELAGKPVLLDTLKLPFYNRR 507

Query: 173 REFSGFRGFGIVHVN-RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231
            E  G     +     R       L    ++    +  ++ G      +   I    S  
Sbjct: 508 GELQGL--IAVWRDVTREYESAEQLRLSEERYHLAMDAVEDGLWDWYLDSEHIICNPSYY 565

Query: 232 PHLRMKNK----VSSLTEYYAHKDDVLKTEKYPL--LTSEESSLPEQEDFHTINLNQYTK 285
             L  K      + S  +   H DD ++ E+Y    L +   +   +      N + +  
Sbjct: 566 SMLGYKPNEFPALVSAIDQLTHPDDRIRVEEYRNQYLENPVDAYEIEFRILGKNSSYHWV 625

Query: 286 KQYFGTLQ-NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI 331
                 ++     +    +      +     +       +  +   +
Sbjct: 626 LSRGRVVEFTTDGQPKRMVGTHKDITRHKSNEVALLEAKQDAELANL 672


>gi|153213464|ref|ZP_01948775.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae 1587]
 gi|124115928|gb|EAY34748.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae 1587]
          Length = 1331

 Score =  361 bits (927), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 97/384 (25%), Positives = 172/384 (44%), Gaps = 10/384 (2%)

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
              +       R+ +RK+  +      IL+AT + +  ++ +G  L+ N     L G   
Sbjct: 450 AIQLSQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTVNAKFLDLMGLYN 509

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
            +++ K                    +      Q  E   +  T  ++ + +        
Sbjct: 510 NEVIDKEPQEIFPAEVAERFAAAHQVLTQQQSSQNYEVSLVDYTGVQREMLVYEASFSDR 569

Query: 550 FS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
               +     + D++E K+ +++L  AK+ A+  S  K DFLA +SHEIRTP+ AI+G +
Sbjct: 570 ADKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMA 629

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
            +  N            +Y   I+ S   +L I+ND+LD SK+E+GK+N+     +LD+ 
Sbjct: 630 HLALNTPLDTT----QRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDV 685

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI- 725
           +    ++V L A EK I        +IP  ++ D   + Q+ +N+  NA+ FT  G  + 
Sbjct: 686 LDNVTAVVSLKAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVL 745

Query: 726 --IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
              +S  +     +   V+DTG+G+   +L+     F Q  NS   +  GTGLGL ++K 
Sbjct: 746 SARVSQLNEQQVTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQ 805

Query: 784 MVDANMGKFYIFSTPAKGTLIEII 807
           +V+   G+  + S   KG+  E  
Sbjct: 806 LVELMGGQITVHSEEGKGSTFEFS 829



 Score = 44.2 bits (103), Expect = 0.092,   Method: Composition-based stats.
 Identities = 13/143 (9%), Positives = 43/143 (30%), Gaps = 3/143 (2%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + + A G    ++ +    +G Y  ++I     ++      +       +L +Q +   
Sbjct: 485 MYCLSADGKFLTVNAKFLDLMGLYNNEVIDKEPQEIFPAEVAERFAAAHQVLTQQQSSQN 544

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
                 ++ T +   + +       R  + +G    GI+       +     ++  +   
Sbjct: 545 YEVSL-VDYTGVQREMLVYEASFSDRADKVNGI--VGILLDMTERKEMEDELRKAKEAAD 601

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQ 228
            + + K    +    +       
Sbjct: 602 AMSQAKGDFLANMSHEIRTPMNA 624



 Score = 41.6 bits (96), Expect = 0.51,   Method: Composition-based stats.
 Identities = 22/228 (9%), Positives = 56/228 (24%), Gaps = 33/228 (14%)

Query: 286 KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYA 344
                 L + S       +            E   L  E +D  P P   + + G     
Sbjct: 438 HWLSQMLDDLSVAIQLSQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTV 497

Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
           N  FL L    + + I+              ++             +   + +  +  + 
Sbjct: 498 NAKFLDLMGLYNNEVIDKEP------QEIFPAEVAERFAAAHQVLTQQQSSQNYEVSLVD 551

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI------- 457
           +       + +      ++  +     GI  +  + +  + ++        ++       
Sbjct: 552 YTGVQREMLVYEASFS-DRADKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDF 610

Query: 458 LEATS-------DGIAI---------INREGI--ILSTNRAVSKLFGY 487
           L   S       + I           ++      +   N +   L G 
Sbjct: 611 LANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINESAKNLLGI 658


>gi|20090805|ref|NP_616880.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
 gi|19915870|gb|AAM05360.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
          Length = 499

 Score =  361 bits (927), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 105/401 (26%), Positives = 177/401 (44%), Gaps = 9/401 (2%)

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
             I                ++ E    +  + K+  E   L  +L +  D +   + EG 
Sbjct: 77  VLIAAGLLKWVSTVASVEKLKAEVEKRKEMQEKLSRERSMLSGLLNSIPDAVFFKDPEGT 136

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
            L  N    +    P E ++ K    F  +   S +N    EI        + +    + 
Sbjct: 137 YLGCNPVFCEFVKRPTEGVVGKKNPDFYSKEVASFLNAEDKEIFETGKA--IIRERWATR 194

Query: 534 KEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
            + + + L+ +   L   +           DI+E ++ ++ L   +   +  S  KS+F+
Sbjct: 195 PDGRKVLLQTVKAPLYDETGNFIGLVGVSRDITERQRAEDALLKVRIAED-ASQAKSEFI 253

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
           A VSHE++TPL +IIGFS+++     G L   R   Y N I  SG  +L  ++D+LD+SK
Sbjct: 254 ATVSHELKTPLNSIIGFSDLLLEDSSGKLS-ERQARYINNISISGKHLLQFIDDILDLSK 312

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709
           IE+GK  L  E     +   +   + +   + K++ +     + I    AD    KQI  
Sbjct: 313 IEAGKTFLEPENFEFTKIFKDIEKVFRPRVSGKKLSLNFEVDSGIKSFYADKMMFKQILY 372

Query: 710 NILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
           N++SNA+ FTP  G I +S        V + V+DTG+G++  +++   +PF Q  +  + 
Sbjct: 373 NLISNAVKFTPEEGSITVSAAKI-GNMVRICVKDTGIGISREDMDSFFQPFKQPDSFFKR 431

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           R E TGLGL L K  V+ + G     S P +G+   I  PL
Sbjct: 432 RYERTGLGLFLVKRFVEMHGGNIQAESVPGEGSSFIIELPL 472



 Score = 55.4 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/180 (11%), Positives = 47/180 (26%), Gaps = 15/180 (8%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT- 148
           D  G     +    + +      ++G +  D         +  +   L  ++    +T  
Sbjct: 132 DPEGTYLGCNPVFCEFVKRPTEGVVGKKNPDF-------YSKEVASFLNAEDKEIFETGK 184

Query: 149 -----LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                 W        V +     P+Y     F G    G+               ++   
Sbjct: 185 AIIRERWATRPDGRKVLLQTVKAPLYDETGNFIGL--VGVSRDITERQRAEDALLKVRIA 242

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
                   +  ++V  E     +       L +++    L+E  A   + +      LL 
Sbjct: 243 EDASQAKSEFIATVSHELKTPLNSIIGFSDLLLEDSSGKLSERQARYINNISISGKHLLQ 302


>gi|171915309|ref|ZP_02930779.1| Multi-sensor Hybrid Histidine Kinase [Verrucomicrobium spinosum DSM
           4136]
          Length = 1205

 Score =  361 bits (927), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 151/810 (18%), Positives = 266/810 (32%), Gaps = 101/810 (12%)

Query: 77  DPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL 136
                     W  D  G +   SEEL   +   A +  G  + D+              L
Sbjct: 15  TAQLFPQYLAW--DRSGGIAAASEELQTLL---AEEGAGKVVSDLFIAEDEMFPKACAPL 69

Query: 137 -LKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA 195
            L  + +          E     V   +AA                    V R    P+A
Sbjct: 70  RLVHRESGRRLDGYCVPEPDASLVWFLVAA-------------------RVGRSTVYPQA 110

Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDV 253
                   F  + +       +      I         +     ++V  L+     +   
Sbjct: 111 ----STNLFDVVADRTINGVVMTDRAGRILWINHRFEKITGWTLDEVRGLSPGSFLQGPE 166

Query: 254 LKTEKYPLLTSEES---SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310
                  L+  +         Q   +  N  +Y        L++ S E   +L+  N  S
Sbjct: 167 TDPATVDLMREKIRTGQPFTTQVLNYRRNGERYWLHLDVQPLRDPSGEVTSFLAIENDIS 226

Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYSH--------GNLFYANPSFLLLTKYKSVDDIEI 362
            S   ++   +  E          +           G     +   + +   K+ + +  
Sbjct: 227 QSRRHEQRIAVQLEVSKILAEAISIEQAIPLLLETVGKSLEWHAGAVWMKDTKADELMLR 286

Query: 363 AGGLS-----TLLDAPKLSDNNAIKPVMLYRSDRTCIAA--------SARLHTIQWNREN 409
           A   +        +    S        ML R   T +               +       
Sbjct: 287 AFWKNAAVEMRPFEQVCRSLKVVKGQGMLGRVWETGVCVWEEDLAGNEQCPRSQALQASG 346

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVD-------------------TRINKRKMEIE 450
                  P  K  +F           E  D                    +  +  + + 
Sbjct: 347 LHGALCFPVVKDTEFLGAFEFISTSVEFSDTEMLGILKSIGSQVGQFVVRKRAEAALLVA 406

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
                +IL+ T   I   + +G+I + N     L GY   +++       +      VM 
Sbjct: 407 NRLNQAILDGTRYSIISTDLDGVIQTFNSGAESLLGYRAAEMVGIKTPEVIHDAREVVMR 466

Query: 511 HYLTE--------------ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--- 553
                              +    +R   E       K+   L + + +  L  +     
Sbjct: 467 AAALTAELGVPVPAGFETFVAKARIRVPDEGEWTYIRKDGTRLPVLLSVTGLTNAEGALT 526

Query: 554 -YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
            +     DI+E ++ +N+L  AK+ AE  +  K +FLA +SHEIRTP+  IIG S ++  
Sbjct: 527 GFLGIAADITERRRFENELRMAKEQAESANRAKGEFLATMSHEIRTPMNGIIGMSGLLLE 586

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
            +          +  + I  SG  ++DI+ D+LD SKIE+ +++L  E  SLD  +   +
Sbjct: 587 TKLES----SQRDMVDAIRTSGEALMDIIEDILDFSKIEARRLDLVEETFSLDAVIDGVV 642

Query: 673 SLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQ---IIIS 728
            L+      K + +      ++P  +  D   ++QI  N++ NA  FT  G     I ++
Sbjct: 643 DLLNHKIQSKGLTMGVILDPDVPLSMRGDAGRLRQILFNLMGNASKFTDEGEVNLFISVA 702

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                N  +   V DTG+GMT  ++E+  +PF Q+ +S   R  GTGLGL ++K +V+  
Sbjct: 703 RGPGGNNMLEFTVADTGIGMTPQQIERLFQPFSQVDSSSTRRFGGTGLGLVISKRLVEMM 762

Query: 789 MGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
            G  ++ STP KG+      P    S P +
Sbjct: 763 GGAIHVESTPGKGSRFFFRLP-ARHSAPEE 791


>gi|75909252|ref|YP_323548.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
 gi|75702977|gb|ABA22653.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
          Length = 1122

 Score =  361 bits (927), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 98/771 (12%), Positives = 240/771 (31%), Gaps = 67/771 (8%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH-IDPNNHIGDLLKRQNTWYGK 146
            +D  G L  ++    K  G    ++IG  + +       I         LK    +   
Sbjct: 240 RVDNLGRLTFVNSVACKIFGKPMDELIGQLIFEWMFPEDEIPQAKEYFQALKSP-PYQIS 298

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
            +  P+   +         + I +   E   F+G G               ++ + + + 
Sbjct: 299 ISEQPVLTPSGIRWFQWNIIGIENTIGEVVEFQGVG--RDITERRQAEESLRQSEARLNL 356

Query: 207 LHEIKKGHSS---------VEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257
             E                +      +                    +    +D    ++
Sbjct: 357 ALEAANMGIWDWYLLTNETIWSANMGLLYGLPSTTLCPSPE---DFLQLVHPEDREKFSQ 413

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
                  +      +      + + +          + + +    +      S     + 
Sbjct: 414 SAKNSIEQGIPFTIEYRTVWNDGSIHWLNSKGQVYYDKAGKPIRMIGTTRDISERKQAEA 473

Query: 318 GENLTPETVDKCPIP-----FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
               + E               +++ G +   N S   +        +E        L  
Sbjct: 474 SLRESEELYRSVVTAMSEGIVLLHTDGQIIACNASAERILGLSREQILERTCVDERWLTI 533

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
            +       +      + RT    S  +  +         ++        +         
Sbjct: 534 HEDGSPFPREQHPAMETLRTGKPCSNVVMGVHKPDGQISWISINSQPLCRENETVPYAVV 593

Query: 433 IE-PEDVDTRIN---KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
               +  + +     +++ E ++ +  ++LE  +D I + + +  IL  N+   +L+G+ 
Sbjct: 594 TSFADISEQQAALRSRQQAEQKIREQAALLEIATDAIFVRDLQSNILFWNQGAERLYGWS 653

Query: 489 VEDILRKPFTVFLEQN-TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
            ++ + +     L    +  +    L  ++ L      +      TK  K + +      
Sbjct: 654 QQEAIGRNTQELLYSETSFHLHEAALNVVMELG---LWQGELQKLTKSGKEVIVESRWTL 710

Query: 548 LPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
           +  ++       +   DI++ KQ + +   A+++              ++H++   LT I
Sbjct: 711 MRDAAGQPKSILVVDTDITQKKQLEEQFFRAQRL-----ESLGTLAGGIAHDLNNILTPI 765

Query: 604 IGFSEVIK------NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           +  S+++K        R   +G+  +      ++ +      +V  +L  ++   G+  +
Sbjct: 766 LAASQLLKVKFPDEQGRTPMVGSTSFQHLLEIVESNARRGAGLVKQVLSFARGFKGERTI 825

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
               V L   +++ I L+      K I   +SF   +  +  D+  + Q+ +N++ NA  
Sbjct: 826 ----VQLKHLITDII-LIGKQTFPKSIEFISSFPEALWSVCGDVTQLHQVLMNLVVNARD 880

Query: 718 FTPSGGQIIIS--------------TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
             P+GG+I ++                      + L V DTG+GM    L +  +PF   
Sbjct: 881 AMPNGGKINVTAENIFIDETYASMILEAQVGNYIQLTVTDTGIGMPPEILNRIFEPFFTT 940

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
                  G GTGLGL     ++ ++ G   + S   +G+  ++  P    +
Sbjct: 941 K----EVGAGTGLGLSTVLGIIKSHGGFVKVSSKVGQGSQFKLFLPAIPAT 987



 Score =  122 bits (306), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 47/437 (10%), Positives = 124/437 (28%), Gaps = 34/437 (7%)

Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP-- 231
           EF G R                  ++ ++ +  L E++            +    S    
Sbjct: 198 EFLGLRKVCQ-RGIVEVQRAEQALQQSEELYRQLVELQNEVILRVDNLGRLTFVNSVACK 256

Query: 232 -PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS--LPEQEDFHTINLNQYTKKQY 288
                M   +  L   +   +D +   K      +     +   E            +  
Sbjct: 257 IFGKPMDELIGQLIFEWMFPEDEIPQAKEYFQALKSPPYQISISEQPVLTPSGIRWFQWN 316

Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE----TVDKCPIPFFVYSHGNLFYA 344
              ++N   E  E+       +     +E    +       ++   +  +          
Sbjct: 317 IIGIENTIGEVVEFQGVGRDITERRQAEESLRQSEARLNLALEAANMGIW----DWYLLT 372

Query: 345 NPSFLL-----LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399
           N +        L    S                    ++          S    I  +  
Sbjct: 373 NETIWSANMGLLYGLPSTTLCPSPED----FLQLVHPEDREKFSQSAKNSIEQGIPFTIE 428

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459
             T+ WN  +   +        ++  + +   G   +  + +  +  +        S++ 
Sbjct: 429 YRTV-WNDGSIHWLNSKGQVYYDKAGKPIRMIGTTRDISERKQAEASLRESEELYRSVVT 487

Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF----TVFLEQNTPSVMNHYLTE 515
           A S+GI +++ +G I++ N +  ++ G   E IL +       + + ++           
Sbjct: 488 AMSEGIVLLHTDGQIIACNASAERILGLSREQILERTCVDERWLTIHEDGSPFPREQHPA 547

Query: 516 ILSLDLRQTLEKITLGSTK-EEKLLSLRIIIKKLPFSS-----CYSLTMHDISEWKQEKN 569
           + +L   +    + +G  K + ++  + I  + L   +         +  DISE +    
Sbjct: 548 METLRTGKPCSNVVMGVHKPDGQISWISINSQPLCRENETVPYAVVTSFADISEQQAALR 607

Query: 570 KLSHAKKIAEKESSHKS 586
               A++   ++++   
Sbjct: 608 SRQQAEQKIREQAALLE 624


>gi|294139125|ref|YP_003555103.1| sensory box histidine kinase/response regulator [Shewanella
           violacea DSS12]
 gi|293325594|dbj|BAJ00325.1| sensory box histidine kinase/response regulator [Shewanella
           violacea DSS12]
          Length = 1235

 Score =  361 bits (927), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 116/569 (20%), Positives = 203/569 (35%), Gaps = 37/569 (6%)

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP--SLSAYFD 316
            P    E+ S   +  F  ++       QY   L   ++   + ++ R       +   +
Sbjct: 395 EPRKPPEQISQGWEPWFQLVSRIFEENLQYTKHLAEQNRRLDKLVARRTARLKETTERRE 454

Query: 317 EGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
               L    +D  P    F    G     N +   +  Y   + I        L    + 
Sbjct: 455 REYALLRSLLDSIPEAIVFKDKEGKYLGCNKAAERMLGYTESELIGQESI--KLTTQEQS 512

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
               A    +L                        + +  +     N+  E +    +  
Sbjct: 513 VRIKAEDERVLAERTPLRYQEKVEFA------GKPVLLDTLKLPFYNRRGELLGLIAVWR 566

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIA--IINREGIILSTNRAVSKLFGYPVED-- 491
           +      +  ++ +   +    ++A  DG+    ++ + II   N A   + GY   +  
Sbjct: 567 DVTREYESAEQLRLSEERYHLAMDAVEDGLWDWYLDSKQII--CNPAYYSMLGYKSNEFP 624

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR-----IIIK 546
            L       +  +    +  Y  + L  D     +       K  +   L      +   
Sbjct: 625 ALVSTLDDLIHPDDRIRVQEYREQYL-GDPIGAFDVEFRMRGKSGQYHWLLSRGRVVEYT 683

Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
                     T  DI+  K  +  L  AK+ AE  +  KS+FLA +SHEIRTP+ AIIG 
Sbjct: 684 VDNQPKRMVGTHKDITRHKSNEVALLEAKQDAESANLSKSEFLANMSHEIRTPMNAIIGM 743

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
            ++ +          +  +Y +    S   +L I+ND+LD SKIE+GK+ L      LD+
Sbjct: 744 LQLAQRTELTA----KQEDYLDKAGFSAQSLLRIINDILDFSKIEAGKLELEKVAFPLDK 799

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQI 725
            +  A+ L  L + +K + +          IL  D   + Q+ +N+LSNA+ FT +G   
Sbjct: 800 VLDHALDLNALKSQQKGVELLLYAPVTAGLILEGDPLRLGQVLINMLSNAVKFTQTG--- 856

Query: 726 IISTTHTSNEE------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
            I        E      +   VRDTG+G++  +       F Q   S   +  GTGLGL 
Sbjct: 857 EIELGCEDVGERDHRITLKFWVRDTGIGISKEQQASLFDAFAQADGSTTRKYGGTGLGLS 916

Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           ++K +V    G+  + S    G+      
Sbjct: 917 ISKHLVSMMGGQMQVQSEMGVGSTFSFTI 945



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 73/605 (12%), Positives = 168/605 (27%), Gaps = 44/605 (7%)

Query: 79   IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL-HIDPNNHIGDLL 137
                    +  D  G     ++   + +G    ++IG     ++     +        +L
Sbjct: 465  DSIPEAIVFK-DKEGKYLGCNKAAERMLGYTESELIGQESIKLTTQEQSVRIKAEDERVL 523

Query: 138  KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN-RVDNDPRAL 196
              +     +     +E     V +D   LP Y+R  E  G     +     R       L
Sbjct: 524  AERTPLRYQE---KVEFAGKPVLLDTLKLPFYNRRGELLGL--IAVWRDVTREYESAEQL 578

Query: 197  GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK----VSSLTEYYAHKDD 252
                ++    +  ++ G      +   I    +    L  K+     + S  +   H DD
Sbjct: 579  RLSEERYHLAMDAVEDGLWDWYLDSKQIICNPAYYSMLGYKSNEFPALVSTLDDLIHPDD 638

Query: 253  VLKTEKYPL--LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310
             ++ ++Y    L     +   +      +   +         +    E       +    
Sbjct: 639  RIRVQEYREQYLGDPIGAFDVEFRMRGKSGQYHWL-----LSRGRVVEYTVDNQPKRMVG 693

Query: 311  LSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
                    ++     ++            + F AN S  + T   ++  +      + L 
Sbjct: 694  THKDITRHKSNEVALLEAKQDAESANLSKSEFLANMSHEIRTPMNAIIGMLQLAQRTELT 753

Query: 371  D-APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
                   D        L R     +  S          + +  +  +     +       
Sbjct: 754  AKQEDYLDKAGFSAQSLLRIINDILDFSKIEAGKLELEKVAFPLDKVLDHALDLNALKSQ 813

Query: 430  QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
            Q G+E            +E + ++L  +L           + G I        +  G   
Sbjct: 814  QKGVELLLYAPVTAGLILEGDPLRLGQVLINMLSNAVKFTQTGEIEL----GCEDVGERD 869

Query: 490  EDILRKPFTVF----LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
              I  K +       + +   + +     +       +      LG +  + L+S+    
Sbjct: 870  HRITLKFWVRDTGIGISKEQQASLFDAFAQA-DGSTTRKYGGTGLGLSISKHLVSMMGGQ 928

Query: 546  KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
             ++        T      ++  +        + E+  S K+  +         P TA+  
Sbjct: 929  MQVQSEMGVGSTFSFTISFEIAEEAEVKPMIVPERLGSLKTLVVDD------NP-TALQI 981

Query: 606  FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
            ++ V+++  F         E    +++S   +L     LLD    E   + +  E   LD
Sbjct: 982  YATVMRDFHFEVDTAANGSEALYKLEKSSVDLL-----LLDWMMPEMDGIQVIEE---LD 1033

Query: 666  EAVSE 670
              V++
Sbjct: 1034 RMVAD 1038


>gi|121591221|ref|ZP_01678522.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae 2740-80]
 gi|153818352|ref|ZP_01971019.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae NCTC 8457]
 gi|227081520|ref|YP_002810071.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae M66-2]
 gi|229505068|ref|ZP_04394578.1| hypothetical protein VCF_000274 [Vibrio cholerae BX 330286]
 gi|298498565|ref|ZP_07008372.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae MAK 757]
 gi|121546919|gb|EAX57070.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae 2740-80]
 gi|126511099|gb|EAZ73693.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae NCTC 8457]
 gi|227009408|gb|ACP05620.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae M66-2]
 gi|229357291|gb|EEO22208.1| hypothetical protein VCF_000274 [Vibrio cholerae BX 330286]
 gi|297542898|gb|EFH78948.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae MAK 757]
          Length = 1331

 Score =  361 bits (927), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 97/384 (25%), Positives = 172/384 (44%), Gaps = 10/384 (2%)

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
              +       R+ +RK+  +      IL+AT + +  ++ +G  L+ N     L G   
Sbjct: 450 AIQLSQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTVNAKFLDLMGLYN 509

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
            +++ K                    +      Q  E   +  T  ++ + +        
Sbjct: 510 NEVIDKEPQEIFPAEVAERFAAAHHVLTQQQSSQNYEVSLVDYTGVQREMLVYEASFSDR 569

Query: 550 FS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
               +     + D++E K+ +++L  AK+ A+  S  K DFLA +SHEIRTP+ AI+G +
Sbjct: 570 ADKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMA 629

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
            +  N            +Y   I+ S   +L I+ND+LD SK+E+GK+N+     +LD+ 
Sbjct: 630 HLALNTPLDTT----QRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDV 685

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI- 725
           +    ++V L A EK I        +IP  ++ D   + Q+ +N+  NA+ FT  G  + 
Sbjct: 686 LDNVTAVVSLKAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVL 745

Query: 726 --IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
              +S  +     +   V+DTG+G+   +L+     F Q  NS   +  GTGLGL ++K 
Sbjct: 746 SARVSQLNEQQVTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQ 805

Query: 784 MVDANMGKFYIFSTPAKGTLIEII 807
           +V+   G+  + S   KG+  E  
Sbjct: 806 LVELMGGQITVHSEEGKGSTFEFS 829



 Score = 44.2 bits (103), Expect = 0.087,   Method: Composition-based stats.
 Identities = 13/143 (9%), Positives = 43/143 (30%), Gaps = 3/143 (2%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + + A G    ++ +    +G Y  ++I     ++      +       +L +Q +   
Sbjct: 485 MYCLSADGKFLTVNAKFLDLMGLYNNEVIDKEPQEIFPAEVAERFAAAHHVLTQQQSSQN 544

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
                 ++ T +   + +       R  + +G    GI+       +     ++  +   
Sbjct: 545 YEVSL-VDYTGVQREMLVYEASFSDRADKVNGI--VGILLDMTERKEMEDELRKAKEAAD 601

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQ 228
            + + K    +    +       
Sbjct: 602 AMSQAKGDFLANMSHEIRTPMNA 624



 Score = 41.9 bits (97), Expect = 0.47,   Method: Composition-based stats.
 Identities = 22/228 (9%), Positives = 57/228 (25%), Gaps = 33/228 (14%)

Query: 286 KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYA 344
                 L + S       +            E   L  E +D  P P   + + G     
Sbjct: 438 HWLSQMLDDLSVAIQLSQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTV 497

Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
           N  FL L    + + I+              ++         +   +   + +  +  + 
Sbjct: 498 NAKFLDLMGLYNNEVIDKEP------QEIFPAEVAERFAAAHHVLTQQQSSQNYEVSLVD 551

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI------- 457
           +       + +      ++  +     GI  +  + +  + ++        ++       
Sbjct: 552 YTGVQREMLVYEASFS-DRADKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDF 610

Query: 458 LEATS-------DGIAI---------INREGI--ILSTNRAVSKLFGY 487
           L   S       + I           ++      +   N +   L G 
Sbjct: 611 LANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINESAKNLLGI 658


>gi|303246258|ref|ZP_07332538.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
 gi|302492321|gb|EFL52193.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
          Length = 1229

 Score =  361 bits (927), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 107/483 (22%), Positives = 197/483 (40%), Gaps = 29/483 (6%)

Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399
            +  A PS   +     +            L    +      +         +    +A 
Sbjct: 258 RVINATPS-GQVLGPDGLYTFATIVLTPDRLPGSDVHRGEVPEQYRQTWKVVSLTP-NAV 315

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459
           L  ++W +    A               +  + +    ++ +   + + +   +   ++E
Sbjct: 316 LAQVRWRQWPLYASASALVLLLAVIGAYLHASRM----LERQDAAQALAVSEARFRGLVE 371

Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL 519
            + D I   + +G++   +   ++LFG P   ++ K    F+     +            
Sbjct: 372 TSPDLIWETDMDGVVTYASPRAAELFGEPPNALVGKKMAQFIPPAGDAP----------E 421

Query: 520 DLRQTLEKITLGS-TKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKK 576
           D  +T E    G+     K L +  + ++ P            DI+E K  +  L  A++
Sbjct: 422 DTPETWEATLPGAGEGGGKALEVSCVPRRTPEGEALGRRGVARDITERKNAQCLLDAARQ 481

Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
            A + +  KS+FLAR+SHEIRTPL A+IG S +       P    R  +Y   I  S + 
Sbjct: 482 EAVRANQAKSEFLARMSHEIRTPLNAVIGMSHLALKTELTP----RQEDYLTKIRSSADT 537

Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP- 695
           +L ++ND+LD SKIE+G+  +   P  LD  +   + ++   A EK++    S  +++P 
Sbjct: 538 LLAVINDILDYSKIEAGRFVIERIPFDLDAVLGNVVDIMGPGAAEKQLEFLLSVGDDVPS 597

Query: 696 RILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDTGVGMTNYE 752
            ++ D   + Q+ LN++ NA+ FT SG    ++ +         +   VRDTG+GMT  +
Sbjct: 598 WLVGDPLRLGQVLLNLVGNAVKFTDSGEVLVEVRLEKAVADAARLRFAVRDTGIGMTPEQ 657

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL--IEIIFPL 810
                +PF Q   S   R  GTGLGL +   +V+   G   + S   +G+     +  P+
Sbjct: 658 KHNLFRPFAQADGSISRRYGGTGLGLSICHRLVELMGGNLAVESVSGQGSEFYFSLTLPV 717

Query: 811 YDT 813
              
Sbjct: 718 SQE 720



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/264 (10%), Positives = 67/264 (25%), Gaps = 18/264 (6%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144
             W  D  G +   S    +  G     ++G ++          P +          TW 
Sbjct: 376 LIWETDMDGVVTYASPRAAELFGEPPNALVGKKMAQFIPPAGDAPED-------TPETW- 427

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
                 P  G      ++++ +P  +   E  G RG  +        + + L     ++ 
Sbjct: 428 --EATLPGAGEGGGKALEVSCVPRRTPEGEALGRRG--VARDITERKNAQCLLDAARQEA 483

Query: 205 SHLHEIKKGHSSVEKEKYD-----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
              ++ K    +    +       +           +  +            D L     
Sbjct: 484 VRANQAKSEFLARMSHEIRTPLNAVIGMSHLALKTELTPRQEDYLTKIRSSADTLLAVIN 543

Query: 260 PLLT-SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
            +L  S+  +     +    +L+              +++  E+L        S    + 
Sbjct: 544 DILDYSKIEAGRFVIERIPFDLDAVLGNVVDIMGPGAAEKQLEFLLSVGDDVPSWLVGDP 603

Query: 319 ENLTPETVDKCPIPFFVYSHGNLF 342
             L    ++           G + 
Sbjct: 604 LRLGQVLLNLVGNAVKFTDSGEVL 627


>gi|167621587|ref|YP_001672095.1| multi-sensor hybrid histidine kinase [Caulobacter sp. K31]
 gi|167351710|gb|ABZ74436.1| multi-sensor hybrid histidine kinase [Caulobacter sp. K31]
          Length = 1069

 Score =  361 bits (927), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 120/717 (16%), Positives = 246/717 (34%), Gaps = 28/717 (3%)

Query: 116 MRLCDVSDILHIDPNNH-IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNRE 174
                +            + + +  + ++  +  +   +G      +    +     + E
Sbjct: 215 RNSLALYHPDDRAKLTACVREAVAAKGSFEAQLRINRPDGEIR--DVISRGVCELDEHGE 272

Query: 175 FSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ---SPP 231
            +    FG+              KR ++++  L +      +  +               
Sbjct: 273 ATAV--FGVFQDITDQTRILNAIKRSERRYKLLADNMSDVVTRIRLDGGSGYISPTIERL 330

Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKY-PLLTSEESSLPEQEDFHTINLNQYTKKQYFG 290
              R +       + + H+DD  +       +         Q      +      +  F 
Sbjct: 331 LGYRPEEMTGRSAQDFVHQDDRSQILAIFGQMAQGLEQKTLQHRAIHKDGRTVWVETSFR 390

Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFD----EGENLTPETVDKCPIPFFVYSHG--NLFYA 344
            +++   +  E ++     +     +       +   E   +      +   G   L  A
Sbjct: 391 LVRDEQDQPLEIVAVIRDATDRKALEDATIAARDEAREQAQRAATAERMAGLGHWRLEVA 450

Query: 345 NPSFLLL-TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403
             S       Y+              L A    D+ A     L+R+  T       +  +
Sbjct: 451 TRSVTWSEQMYQIYGLDPALPLDLDALLAMTHPDDQAESSQRLHRALTTGQPTMEAVFRL 510

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
                    +T     + +   + +   G   +  + +  +  +     +   + E  SD
Sbjct: 511 IRADGQLRDITGNMLVQKDADGQVIAVVGTMSDVTEQQHAQAALAQSEARYRLLAENASD 570

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT-EILSLDLR 522
            I   + +G +   + ++    GY  E ++      ++       +   +  +  S    
Sbjct: 571 LIMHSDVKGQVTYVSPSILPTTGYAPEALVGTNILDWIAPEDVPGVQAAVAKQFKSRGAE 630

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSS-----CYSLTMHDISEWKQEKNKLSHAKKI 577
             +        K+ + L L                  +  + DIS  +  + +L  A+  
Sbjct: 631 PPIAVEYRVRHKDGRELWLEARPTLAFDPETGAITGITDVVRDISARRVLEAELRAARAE 690

Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
           AE  ++ KS+FLA +SHE+RTPLTA++GFS  +  ++  P  +     Y      +G  +
Sbjct: 691 AEAAAAVKSEFLANMSHELRTPLTAVLGFS-RLAEEQ--PELSDTTRGYLKRACNAGQAL 747

Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR- 696
           L  VND+LD SK+E+G++ +   P+S  +  +E + L    A EK I +       +PR 
Sbjct: 748 LLTVNDILDFSKLEAGQVEIAPRPMSPAKLATETLDLFATQAAEKGIALHLGGLETLPRT 807

Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS-NEEVILRVRDTGVGMTNYELEK 755
           + AD   V+QI LN++ NA+ FT  G  + +          +   V DTG G+     ++
Sbjct: 808 VRADPDRVRQILLNLIGNAVKFTMVGS-VRVDAIFEPLGGFLSFAVTDTGPGVPEDRADQ 866

Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
             + F Q+  S   +  GTGLGL + K + +A  G     S   +G+      P  +
Sbjct: 867 LFQRFSQVDASSTRKHGGTGLGLAICKGLAEAMGGDIGAQSKVGEGSCFWFTIPAPE 923



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/375 (9%), Positives = 84/375 (22%), Gaps = 28/375 (7%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ-NTWYGK 146
            I   G    IS  + + +G    +M G    D            I   + +       +
Sbjct: 313 RIRLDGGSGYISPTIERLLGYRPEEMTGRSAQDFVHQDDRSQILAIFGQMAQGLEQKTLQ 372

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                 +G    V ++ +   +     +        ++                  +   
Sbjct: 373 HRAIHKDGRT--VWVETSFRLVRDEQDQP--LEIVAVIRDATDRKALEDATIAARDEARE 428

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSP-----------PPHLRMKNKVSSLTEYYAHKDDVLK 255
             +       +    +      +                              H DD  +
Sbjct: 429 QAQRAATAERMAGLGHWRLEVATRSVTWSEQMYQIYGLDPALPLDLDALLAMTHPDDQAE 488

Query: 256 TEKY--PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL-- 311
           + +     LT+ + ++         +             ++   +    +   +  +   
Sbjct: 489 SSQRLHRALTTGQPTMEAVFRLIRADGQLRDITGNMLVQKDADGQVIAVVGTMSDVTEQQ 548

Query: 312 --SAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
              A   + E       +            G + Y +PS L  T Y   + +     L  
Sbjct: 549 HAQAALAQSEARYRLLAENASDLIMHSDVKGQVTYVSPSILPTTGYAP-EALVGTNILDW 607

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN-QFPEN 427
           +          A+      R     IA   R   ++      L +   P    + +    
Sbjct: 608 IAPEDVPGVQAAVAKQFKSRGAEPPIAVEYR---VRHKDGRELWLEARPTLAFDPETGAI 664

Query: 428 MPQNGIEPEDVDTRI 442
                +  +    R+
Sbjct: 665 TGITDVVRDISARRV 679


>gi|71909483|ref|YP_287070.1| PAS [Dechloromonas aromatica RCB]
 gi|71849104|gb|AAZ48600.1| PAS protein [Dechloromonas aromatica RCB]
          Length = 853

 Score =  361 bits (927), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 125/607 (20%), Positives = 219/607 (36%), Gaps = 51/607 (8%)

Query: 238 NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297
           ++V +                 P   S    L +       NL +             + 
Sbjct: 103 DQVYTHALRLPIDGQRTILLLAPGEPSGGLPLTQIFQPVLANLAKAIILCCNNDRLTRAL 162

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKS 356
            +    +        A  +          D  P   +V   +G     NP F        
Sbjct: 163 AADRDDARAELAVALAQSERERAFLDSLYDAIPDLVWVKDMNGAYLSCNPMFSRFFNASE 222

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
            D +             +L+D    K      +    I           +         I
Sbjct: 223 YDIVGR---TDYDFIDKELADFFREKDRAAAEAGGPTINEEWLTF---GDSGYRGLFETI 276

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL---------------------- 454
                ++    +   GI  E  + R  +  +     +L                      
Sbjct: 277 KTPMRDKEGYLIGILGISREITERRRVEDALRTSEAELDRHRQHLEALVAERTHALAQAN 336

Query: 455 ----CSIL--EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
                +I   +    GI  ++ +G  +  NR  + + GY V++++R          T   
Sbjct: 337 VQLEQTIFAMDRVGIGIHWVDTQGYFIYVNRVAAAMLGYSVDEMMRLSVPDIHPDFTIEG 396

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEW 564
                 +I          +      ++  ++ + I I   P ++     Y   + DISE 
Sbjct: 397 FGAATEKIRQAGRVSLDAQ---HRHRDGHMVPVSINIYYRPETAQEPARYITFVSDISER 453

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           K+ + +L  AK++AE+ +  KS FLA +SHEIRTP+ AI+G + +++        N    
Sbjct: 454 KRAEQELREAKELAEQATKAKSAFLANMSHEIRTPMNAILGSTYLMRRGLTDAALNEP-- 511

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
                I+ SG  +L I++D+LD+SKIE+GK+ L   P+ L + + E   +++  A EK +
Sbjct: 512 --LERIEASGKHLLSIIDDILDLSKIEAGKLVLEEAPLMLPQLLGEVAEMLRGRAQEKNL 569

Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILR 740
            +R   A     +L D   ++Q  +N  +NAI FT  G  I + +      +    V L 
Sbjct: 570 AVRVESAGWPLNVLGDATRLRQALINYANNAIKFTDHGA-ITLRSRVIEENDESILVRLE 628

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V DTG+G++   L +   PF Q  +S   +  GTGLGL + + +     G     S+  K
Sbjct: 629 VEDTGIGISPEALGRLFTPFEQADSSTTRKYGGTGLGLAITRHLAILMGGAAGAESSLGK 688

Query: 801 GTLIEII 807
           G+L  I 
Sbjct: 689 GSLFWIT 695



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 43/423 (10%), Positives = 105/423 (24%), Gaps = 51/423 (12%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D  GY   ++      +G    +M+ + + D+     I+      + +++         
Sbjct: 356 VDTQGYFIYVNRVAAAMLGYSVDEMMRLSVPDIHPDFTIEGFGAATEKIRQAGRVSLDAQ 415

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +G  + V I++   P  ++       R    V             +   +      
Sbjct: 416 HRHRDGHMVPVSINIYYRPETAQ----EPARYITFVSDISERKRAEQELREAKELAEQAT 471

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           + K    +    +              M+  ++          + ++     LL+  +  
Sbjct: 472 KAKSAFLANMSHEIRTPMNAILGSTYLMRRGLTD--AALNEPLERIEASGKHLLSIIDDI 529

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE--------- 319
           L    D   I   +   ++    L     E  E L  R      A   E           
Sbjct: 530 L----DLSKIEAGKLVLEEAPLMLPQLLGEVAEMLRGRAQEKNLAVRVESAGWPLNVLGD 585

Query: 320 --NLTPETVDKCPIPFFVYSHGNLFYANPSFLL-------LTKYKSVDDIEIAGGLSTLL 370
              L    ++          HG +   +              + +          L  L 
Sbjct: 586 ATRLRQALINYANNAIKFTDHGAITLRSRVIEENDESILVRLEVEDTGIGISPEALGRLF 645

Query: 371 DAPKLSDNNAIKP-----------------------VMLYRSDRTCIAASARLHTIQWNR 407
              + +D++  +                                +    +ARL   Q   
Sbjct: 646 TPFEQADSSTTRKYGGTGLGLAITRHLAILMGGAAGAESSLGKGSLFWITARLKRHQVQA 705

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
            +   +                   +     D  IN+   ++ V ++   ++   DG   
Sbjct: 706 SDKGMLVTGSSRDVEAALRQRYAGRLVLLVEDDPINREVAQMMVEEVGLAIDVAEDGCEA 765

Query: 468 INR 470
           +++
Sbjct: 766 LDK 768



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/279 (7%), Positives = 62/279 (22%), Gaps = 39/279 (13%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID--PNNHIGDLLKRQNT 142
             W  D +G     +    +      + ++G    D  D    D               T
Sbjct: 197 LVWVKDMNGAYLSCNPMFSRFFNASEYDIVGRTDYDFIDKELADFFREKDRAAAEAGGPT 256

Query: 143 WYGKTTLWPIEG-TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
              +   W   G +      +    P+  +     G  G  I              +  +
Sbjct: 257 INEE---WLTFGDSGYRGLFETIKTPMRDKEGYLIGILG--ISREITERRRVEDALRTSE 311

Query: 202 KKFSHLHEIKKGHSSVEKEK------------------------------YDIFSQQSPP 231
            +     +  +   +                                   +   ++ +  
Sbjct: 312 AELDRHRQHLEALVAERTHALAQANVQLEQTIFAMDRVGIGIHWVDTQGYFIYVNRVAAA 371

Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQED-FHTINLNQYTKKQYFG 290
                 +++  L+    H D  ++          ++     +      + +         
Sbjct: 372 MLGYSVDEMMRLSVPDIHPDFTIEGFGAATEKIRQAGRVSLDAQHRHRDGHMVPVSINIY 431

Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
                ++E   Y++  +  S     ++      E  ++ 
Sbjct: 432 YRPETAQEPARYITFVSDISERKRAEQELREAKELAEQA 470


>gi|319898572|ref|YP_004158665.1| two-component sensor histidine kinase [Bartonella clarridgeiae 73]
 gi|319402536|emb|CBI76079.1| two-component sensor histidine kinase [Bartonella clarridgeiae 73]
          Length = 769

 Score =  361 bits (926), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 124/506 (24%), Positives = 222/506 (43%), Gaps = 53/506 (10%)

Query: 342 FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401
            Y + +   +  Y   + +     ++ ++D    +     + +M              + 
Sbjct: 281 VYWSRAMYEMLGYAPQNALLSISQITAIIDPKDANFFEIAQELM----SGAKKHIDINV- 335

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
            ++      + M         + P      GI  +  + R    +     +++   +E  
Sbjct: 336 PMRHAEGYYVWMRIRAEVTDEEEP---HLVGISFDISEQRQFAEQTAQADLRIRDAIENI 392

Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
           S+   + +  G ++ +N    +    P + +        +E  +   ++ Y  ++     
Sbjct: 393 SESFVLWDSAGRLVMSNSKFCEYAAIPKQMLQSGIERATVEAMSRPAISEYPLKVDEAG- 451

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK----------- 570
                  ++  T +   L +    ++            DISE KQ++ K           
Sbjct: 452 ----NLTSIRQTADGYWLKIN---ERRTQDGGLVCIGTDISELKQQQEKFEDSERRLFSF 504

Query: 571 ------------------------LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
                                   L   K+ AE  +  KS+FLA +SHE+RTPL AI+GF
Sbjct: 505 IQELKRARGNAQQRATEVEKLNKSLQEEKEKAESANKAKSEFLANMSHELRTPLNAILGF 564

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
           SE++    FGPLG+ RY EY + I  SG  +L ++ND+LD+SKIE+G+  L  + ++L+ 
Sbjct: 565 SEIMLQSTFGPLGSQRYKEYMHDIHNSGTHLLTLINDILDMSKIEAGRFTLDCKNINLEP 624

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726
            +SE I  +   A  K+I + T+    +     D R++KQI LN++SNA+ FTPSGG I 
Sbjct: 625 IISETIRTLTPQAQAKKISLTTNIEPKL-HADVDCRAMKQIFLNLISNAVKFTPSGGSID 683

Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
           I      N  +I  ++DTGVG+    ++K  KPF Q+ N       G+GLGL +++++++
Sbjct: 684 IR-AFQKNNNLIFSIKDTGVGIPKEAIKKLGKPFEQVENQFTKTHPGSGLGLAISRSLLE 742

Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLYD 812
            + GK  I S  AKGT++ I  P+  
Sbjct: 743 LHKGKLEITSKEAKGTIVTITMPIQQ 768


>gi|254423730|ref|ZP_05037448.1| PAS fold family [Synechococcus sp. PCC 7335]
 gi|196191219|gb|EDX86183.1| PAS fold family [Synechococcus sp. PCC 7335]
          Length = 774

 Score =  361 bits (926), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 102/444 (22%), Positives = 196/444 (44%), Gaps = 25/444 (5%)

Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR--KME 448
              I  +     I W      A+T +           +    +   +   +       +E
Sbjct: 39  GHLIDIATLWFPIYWISGIVKALTALVSCYTAMELVVLLPQFLALRESQKKEAAAQKALE 98

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
                          G+A+++  G  L  N++ +++ GY  E++    F      +    
Sbjct: 99  KSRQVFRDAFHDAPIGVALVSLVGKFLKVNKSTAQITGYSEEELCAVDFQSITHPDDLQE 158

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEW 564
               + +++    R+  +       K   ++ +RI +  L  ++     +   + D+SE 
Sbjct: 159 DLDLVDQLM-QGSRRLYQLEKRYFHKSGHIVYVRISVSLLRDANGDPQFFVAHIEDVSEQ 217

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
            +    L  A++ AE  S  KS FLA +SHEIRTP+ A++G +E++++         +  
Sbjct: 218 HRVNAALKAAQQEAEVASKSKSSFLAMMSHEIRTPMNALLGMAELLESTALTV----QQK 273

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           E+ + I  SG  +L I+ND+LD SK+ESG + L    + L E + + + L    A+EK +
Sbjct: 274 EFVSIIRSSGKTLLTIINDILDFSKVESGNLVLEEGYLDLYECIEDVLILFSNQADEKSL 333

Query: 685 LIRTSFAN-NIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNE------ 735
           ++ +      +P +   D   ++QI  N++SN+I FT  G   I ++ +    E      
Sbjct: 334 MLSSLVEPATMPTVFTGDPVRMRQILSNLISNSIKFTKKGEISIHVTISPIEAEALSEKR 393

Query: 736 ---EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
              ++   V+DTG+G+  ++L+K  KPF Q+ +S   +  GTGLGL + K +V+   G+ 
Sbjct: 394 SYYQLQFAVKDTGIGIPKHKLDKLFKPFSQVDSSVTRKHGGTGLGLSICKRLVELMGGQM 453

Query: 793 YIFSTPAKGTLIEII--FPLYDTS 814
           ++ S     +        P Y+ +
Sbjct: 454 WVESELGCSSTFHFSIQLPAYENA 477



 Score = 54.6 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 14/138 (10%), Positives = 43/138 (31%), Gaps = 6/138 (4%)

Query: 93  GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK--RQNTWYGKTTLW 150
           G   ++++   +  G    ++  +    ++    +  +  + D L    +  +  +   +
Sbjct: 122 GKFLKVNKSTAQITGYSEEELCAVDFQSITHPDDLQEDLDLVDQLMQGSRRLYQLEKRYF 181

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
              G  +YV I ++ L     N +   F     +      +   A  K   ++     + 
Sbjct: 182 HKSGHIVYVRISVSLL--RDANGDPQFF--VAHIEDVSEQHRVNAALKAAQQEAEVASKS 237

Query: 211 KKGHSSVEKEKYDIFSQQ 228
           K    ++   +       
Sbjct: 238 KSSFLAMMSHEIRTPMNA 255


>gi|158338777|ref|YP_001519954.1| two-component hybrid sensor and regulator histidine kinase
           [Acaryochloris marina MBIC11017]
 gi|158309018|gb|ABW30635.1| two-component hybrid sensor and regulator histidine kinase,
           putative [Acaryochloris marina MBIC11017]
          Length = 826

 Score =  361 bits (926), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 114/569 (20%), Positives = 204/569 (35%), Gaps = 71/569 (12%)

Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDI 360
                  P   A      N     +D+    F  Y     +   N       +      +
Sbjct: 3   MPHQPADPFDIASPLSLANPFAAFIDQTVDIFVAYDQDLRIITINRIGAQRLQRPYEQIL 62

Query: 361 EIAG----GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
                   G    L  P L         +    +           TI             
Sbjct: 63  GQTNQQLFGAQAELIDPFLMSALETGERVFAEQELVFNQQRYYYDTIY------------ 110

Query: 417 PFEKANQFPENMPQNGIEPEDV----DTRINKRKMEIE----VMQLCSILEATSDGIAII 468
                +         GI  +        +  +  ++ +      +  +     +   A+I
Sbjct: 111 -TPTTDARTGERQVWGICRDITIKKDLQKKREALLKQQTIQIEERFRTSFNNATIAKALI 169

Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528
             +G  L  N A+S+L GY   ++L+             +  H + ++L      + +  
Sbjct: 170 ALDGSWLQVNPALSQLLGYDPTELLKLRIEDLTHPEDQDIDRHQVRQLLI-GQTSSYQIE 228

Query: 529 TLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAK--------- 575
                +    LS+ + +  +  S      +   M DI++ KQ +  L             
Sbjct: 229 KRFLHRLGHTLSVLLSVALILNSQGKPSYFIAEMQDITQRKQAEAALYLQLQKTLQLQTA 288

Query: 576 ------------KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
                       + A+  +  KS+FLA +SHEIRTP+ A+IG ++++K+       +P  
Sbjct: 289 LQTKNQALLESSQAAQAANLAKSEFLAMISHEIRTPMNAVIGMTDLLKDTHL----DPHQ 344

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            ++   I  SG  +L+I+ND+LD SKIESGK+ L   P  +   V EA+ +V   A  K 
Sbjct: 345 QDFVETIRTSGESLLNIINDILDFSKIESGKLELELHPFPISTCVEEALDIVNSKATAKG 404

Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS--------- 733
           + +        P  I  D   ++QI +N+L NA+ FT  G ++I++ +            
Sbjct: 405 LELAYLIEPGTPNHIQGDANRLRQILVNLLGNAVKFTADG-EVIVTISARDVATAEMTPE 463

Query: 734 ----NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
                 E++  V+DTG+G+     +K  + F Q+ +S      GTGLGL ++K + +   
Sbjct: 464 VPLSLHELLFEVKDTGIGIAPEHQQKLFQSFCQLDSSITREYGGTGLGLAISKQLCELMG 523

Query: 790 GKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
           G  ++ S    G+             P D
Sbjct: 524 GTIWVESQVGIGSSFFFTMAASALPGPED 552



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/108 (13%), Positives = 35/108 (32%), Gaps = 6/108 (5%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG--KTTL 149
            G   +++  L + +G    +++ +R+ D++     D + H    L    T     +   
Sbjct: 172 DGSWLQVNPALSQLLGYDPTELLKLRIEDLTHPEDQDIDRHQVRQLLIGQTSSYQIEKRF 231

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG 197
               G    + + L+   I +   + S F     +          A  
Sbjct: 232 LHRLGHT--LSVLLSVALILNSQGKPSYF--IAEMQDITQRKQAEAAL 275


>gi|297578936|ref|ZP_06940864.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae RC385]
 gi|297536530|gb|EFH75363.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae RC385]
          Length = 1331

 Score =  361 bits (926), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 97/384 (25%), Positives = 173/384 (45%), Gaps = 10/384 (2%)

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
              +       R+ +RK+  +      IL+AT + +  ++ +G  L+ N     L G   
Sbjct: 450 AIQLSQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTVNVKFLDLMGLYN 509

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
            +++ K                    +      Q  E   +  T  ++ + +        
Sbjct: 510 NEVIDKEPQEIFPAEVAERFAAAHQVLTQQQSSQNYEVSLVDYTGVQREMLVYEASFSDR 569

Query: 550 FS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
               +     + D++E K+ +++L  AK+ A+  S  K DFLA +SHEIRTP+ AI+G +
Sbjct: 570 ADKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMA 629

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
            +  N            +Y + I+ S   +L I+ND+LD SK+E+GK+N+     +LD+ 
Sbjct: 630 HLALNTPLDTT----QRKYVSRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDV 685

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI- 725
           +    ++V L A EK I        +IP  ++ D   + Q+ +N+  NA+ FT  G  + 
Sbjct: 686 LDNVTAVVSLKAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVL 745

Query: 726 --IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
              +S  +     +   V+DTG+G+   +L+     F Q  NS   +  GTGLGL ++K 
Sbjct: 746 SARVSQLNEQQVTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQ 805

Query: 784 MVDANMGKFYIFSTPAKGTLIEII 807
           +V+   G+  + S   KG+  E  
Sbjct: 806 LVELMGGQITVHSEEGKGSTFEFS 829



 Score = 43.1 bits (100), Expect = 0.22,   Method: Composition-based stats.
 Identities = 13/143 (9%), Positives = 43/143 (30%), Gaps = 3/143 (2%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + + A G    ++ +    +G Y  ++I     ++      +       +L +Q +   
Sbjct: 485 MYCLSADGKFLTVNVKFLDLMGLYNNEVIDKEPQEIFPAEVAERFAAAHQVLTQQQSSQN 544

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
                 ++ T +   + +       R  + +G    GI+       +     ++  +   
Sbjct: 545 YEVSL-VDYTGVQREMLVYEASFSDRADKVNGI--VGILLDMTERKEMEDELRKAKEAAD 601

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQ 228
            + + K    +    +       
Sbjct: 602 AMSQAKGDFLANMSHEIRTPMNA 624



 Score = 40.4 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/180 (10%), Positives = 46/180 (25%), Gaps = 12/180 (6%)

Query: 286 KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYA 344
                 L + S       +            E   L  E +D  P P   + + G     
Sbjct: 438 HWLSQMLDDLSVAIQLSQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTV 497

Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
           N  FL L    + + I+              ++             +   + +  +  + 
Sbjct: 498 NVKFLDLMGLYNNEVIDKEP------QEIFPAEVAERFAAAHQVLTQQQSSQNYEVSLVD 551

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
           +       + +      ++  +     GI  +  + +  + ++           +A S  
Sbjct: 552 YTGVQREMLVYEASFS-DRADKVNGIVGILLDMTERKEMEDELRKAKE----AADAMSQA 606


>gi|325110166|ref|YP_004271234.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
           5305]
 gi|324970434|gb|ADY61212.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
           5305]
          Length = 1273

 Score =  361 bits (926), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 96/468 (20%), Positives = 182/468 (38%), Gaps = 21/468 (4%)

Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
            +   + +    + L  +                ++   +    R+ + Q +   ++ + 
Sbjct: 374 TAALALGVMRLFTPLRVSELAEQQGLNMSEHGTSTEMVDLLNDMRIQSEQGDFSQTVHVE 433

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII 474
                       N     +  E        R++     +  SI E  S+GI      G +
Sbjct: 434 EHTEVGQIAREYNRVLERVVQEMEWREEAVRQLRTAEEKFRSIFENASEGIFRTTANGRL 493

Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN-HYLTEILSLDLRQTLEKITLGST 533
           L  N ++ ++ GY   + L +                  + ++ +    +          
Sbjct: 494 LEANPSLLEMLGYESVEDLLQSIPSLDRMYVKPQDRTRLIEDLRTNGKVKQFAASLY--R 551

Query: 534 KEEKLLSLRIIIKKLPFSSC-------YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
           K+ +++   I  + +   S           ++ D++E  + +  L   K++AE  +  KS
Sbjct: 552 KDGRIIDTSINARLIAPDSYDDVTQEIIEGSLIDVTERNEAEV-LRQQKEMAEAANKAKS 610

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
            FLA +SHEIRTPL  +IG  +++         + +   Y +    S   +L ++ND+LD
Sbjct: 611 SFLATMSHEIRTPLNGVIGMLDLLCETD----TDQQQGRYVSIAKNSAESLLCLINDILD 666

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVK 705
            SKIE+GK+ L     +L   V +   +    A  K + +       +  R+L D   ++
Sbjct: 667 FSKIEAGKLELSPSEFNLPTLVEDVSDMFAHRAASKGLELSCHILPEVASRVLGDSERLR 726

Query: 706 QIALNILSNAIHFTPSGGQIIISTT----HTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761
           QI +N++ NAI FT  G +I I+          + V   V+DTGVG+     ++  +PF 
Sbjct: 727 QILINLIGNAIKFTEVG-EIRINVAATSTRDHEQWVRFEVQDTGVGIPEDIQQRLFQPFE 785

Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           Q   S   +  GTGLGL + + +     GK  + S    G    +  P
Sbjct: 786 QADASTTRKFGGTGLGLAICRELAILMGGKITVDSQLGSGATFSLEIP 833



 Score = 38.5 bits (88), Expect = 5.5,   Method: Composition-based stats.
 Identities = 13/84 (15%), Positives = 30/84 (35%), Gaps = 2/84 (2%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH--IDPNNHIGDLLKRQNTW 143
            +   A+G L E +  L + +G  + + +   +  +  +     D    I DL       
Sbjct: 484 IFRTTANGRLLEANPSLLEMLGYESVEDLLQSIPSLDRMYVKPQDRTRLIEDLRTNGKVK 543

Query: 144 YGKTTLWPIEGTNLYVPIDLAALP 167
               +L+  +G  +   I+   + 
Sbjct: 544 QFAASLYRKDGRIIDTSINARLIA 567


>gi|148927534|ref|ZP_01811018.1| PAS/PAC sensor hybrid histidine kinase [candidate division TM7
           genomosp. GTL1]
 gi|147887117|gb|EDK72601.1| PAS/PAC sensor hybrid histidine kinase [candidate division TM7
           genomosp. GTL1]
          Length = 571

 Score =  361 bits (926), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 100/422 (23%), Positives = 189/422 (44%), Gaps = 18/422 (4%)

Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
                +   + +  ++  +        N+      Q G+  +  + +    ++ +    L
Sbjct: 16  PYEIEIKIYKKDGSDA-WVFISNSPLFNEVGGIERQIGVMVDITERKKTVEELTM----L 70

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
             +   T+ G+ I + EG +   N A  ++ GY + D+  K     L+     V      
Sbjct: 71  SLVASKTTSGVVINDSEGKVEWVNSAFEQITGYSLNDVKNKHLGDSLKGELTDVSIIQKA 130

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNK 570
             LS + +Q+ E   L   K+ + L + +I   +  ++     Y  T+ DI+  K+ + +
Sbjct: 131 RELS-EQKQSFEVDLLIYRKDGQPLWISVINSVIMGNNGRVDKYIETIIDITAKKKAELE 189

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           L  AK+ A + S  K  F+  +SHEIRTPL A+IG S ++ N            E  + +
Sbjct: 190 LIAAKEEALQLSRAKDMFMGVMSHEIRTPLNAVIGMSHILLNDN----PLESQKENLSIL 245

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
           + S   ++ ++ND+LD +KIE+G + L    + + + +   I  ++  ANEK I +  S 
Sbjct: 246 NFSAENLMTLINDVLDFTKIETGNVELEIARLDIRDMIQSIIGSMKYKANEKGIYLTKSI 305

Query: 691 ANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVILR--VRDTGV 746
              +P  ++ D   + QI LN++SN++ FT  GG  I +     + + V +R  V DTG+
Sbjct: 306 DEAVPDIVMGDRARLVQILLNLVSNSVKFTSEGGVNIDLKVIEQTKDTVRIRFGVSDTGI 365

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+   +L    + F Q          GTGLGL ++K ++  +  +  + S   +G+    
Sbjct: 366 GIAENKLNTIFESFKQAEADTTRHYGGTGLGLAISKRLIQLHDSRINVDSVLGQGSTFWF 425

Query: 807 IF 808
             
Sbjct: 426 TI 427



 Score = 40.0 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 11/71 (15%), Positives = 20/71 (28%), Gaps = 7/71 (9%)

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDIS 562
            V    +  +      +  E       K+     + I    L             M DI+
Sbjct: 2   EVFREAVQAVKEN---KPYEIEIKIYKKDGSDAWVFISNSPLFNEVGGIERQIGVMVDIT 58

Query: 563 EWKQEKNKLSH 573
           E K+   +L+ 
Sbjct: 59  ERKKTVEELTM 69


>gi|220920192|ref|YP_002495493.1| multi-sensor hybrid histidine kinase [Methylobacterium nodulans ORS
           2060]
 gi|219944798|gb|ACL55190.1| multi-sensor hybrid histidine kinase [Methylobacterium nodulans ORS
           2060]
          Length = 1009

 Score =  361 bits (926), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 115/653 (17%), Positives = 237/653 (36%), Gaps = 29/653 (4%)

Query: 172 NREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231
                G                    +        L  + +G   V  ++    + +   
Sbjct: 103 AGARVGTGPPAAAAAASGPESRVDAARTAALLGKTLDCMDQGVILVGPDRTVQVANRRAR 162

Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291
             L +     +    Y     + +   +      ++ L   ED          ++   GT
Sbjct: 163 EWLGLSEAFIASRPSYREVRALARRSPHWGSLVADTPLQLSEDDPAATHTVAERRNAEGT 222

Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY--SHGNLFYANPSFL 349
           +        E        +        E+      +       +     G   Y +PS  
Sbjct: 223 VLEIRTVRTEDGGLIQTLTDITERRSAEDRYRLLAENATDLISLQSIRGGTKTYVSPSAR 282

Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
            +  ++  +        + L  A +L  ++  +      S           + ++    +
Sbjct: 283 AVVGWEPEE-------FAQLTLAQQLHPDDLARVKREAASLTPDAPRRTSEYRLRHKSGH 335

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469
            + +           P+         +    R     +     +   + E T D IA  +
Sbjct: 336 YVWVESTLLLTKPGTPDEALIIA-SRDVTARRAADDALRESEARHRLLAERTGDVIARAD 394

Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
            +G +   + +V  + GY  + +L +     +       + H    +++       +   
Sbjct: 395 LDGTLRYLSPSVEPVTGYAADALLGRSAMAHVHPQDRRTVLHRYAALVAAGPGARAKFEY 454

Query: 530 LGSTKEEKLLSLRIIIKKLPFSS-----CYSLTMHDISEWKQEKNKLSHA-------KKI 577
               +    + L +    L   +      +     D++  K    +L+ A       +  
Sbjct: 455 RVRHRHGHDVWLEVNPTVLYDEATGVPLGFVDVARDVTARKAVDAELAAAREQAEAARVH 514

Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
           AE  S  K+DFLA +SHEIRTPL+++IG++E++ +    P         A+ I  +G+ +
Sbjct: 515 AELASQAKTDFLASMSHEIRTPLSSVIGYTELLLDD---PDLTEGQRLQASRIRSAGSAL 571

Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR- 696
           L +V+D+LD SKIE+G+++L   P +L   +  A+++V+  A  K + IR      +P+ 
Sbjct: 572 LTVVDDILDFSKIEAGQVDLDLMPFALHGLIENAVAIVRQLAERKGLEIRVDIDPALPQT 631

Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQI--IISTTHTSNEE-VILRVRDTGVGMTNYEL 753
           ++ D   ++QI LN L+NA+ FT  G  +  + +   T     + + V DTG+G+   + 
Sbjct: 632 LVGDQNRLRQILLNFLNNALKFTRRGRVVLAVATAGSTDRGWPIRVSVTDTGIGIAPEQQ 691

Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
            +  K F Q+  S +    GTGLGL ++K +++   G   + S P +G+    
Sbjct: 692 ARLFKRFTQVDGSIRREFGGTGLGLAISKKLIELMGGAIGVVSAPGEGSTFWF 744



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/284 (8%), Positives = 69/284 (24%), Gaps = 7/284 (2%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
             D  G L+ +S  +    G  A  ++G                H    L          
Sbjct: 392 RADLDGTLRYLSPSVEPVTGYAADALLGRSAMAHVHPQDRRTVLHRYAALVAAGPGARAK 451

Query: 148 TLWPIEGTNLY-VPIDLAALPIYSRN-REFSGFRGFGIVHVNRVDND-PRALGKRLDKKF 204
             + +   + + V +++    +Y        GF    +             L    ++  
Sbjct: 452 FEYRVRHRHGHDVWLEVNPTVLYDEATGVPLGF--VDVARDVTARKAVDAELAAAREQAE 509

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
           +     +    +       +  +   P    +      L +    +   L+  +    ++
Sbjct: 510 AARVHAELASQAKTDFLASMSHEIRTPLSSVIGYTELLLDDPDLTEGQRLQASRIR--SA 567

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
             + L   +D    +  +  +                 ++     +     +   ++ P 
Sbjct: 568 GSALLTVVDDILDFSKIEAGQVDLDLMPFALHGLIENAVAIVRQLAERKGLEIRVDIDPA 627

Query: 325 TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
                           L + N +     + + V  +  AG    
Sbjct: 628 LPQTLVGDQNRLRQILLNFLNNALKFTRRGRVVLAVATAGSTDR 671



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/400 (8%), Positives = 86/400 (21%), Gaps = 24/400 (6%)

Query: 93  GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY-GKTTLWP 151
           G    +S      +G    +   + L        +         L         +  L  
Sbjct: 272 GTKTYVSPSARAVVGWEPEEFAQLTLAQQLHPDDLARVKREAASLTPDAPRRTSEYRLRH 331

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
             G  ++V   L      + +                         +  + +   L E  
Sbjct: 332 KSGHYVWVESTLLLTKPGTPDEALIIAS-----RDVTARRAADDALRESEARHRLLAERT 386

Query: 212 KGHSSVEKEKYDIFSQQ---SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL---LTSE 265
               +       +        P         +      + H  D                
Sbjct: 387 GDVIARADLDGTLRYLSPSVEPVTGYAADALLGRSAMAHVHPQDRRTVLHRYAALVAAGP 446

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNS-KESFEYLSHRNHPSLSAYFDEGENLTPE 324
            +    +      + +    +     L + +      ++      +     D       E
Sbjct: 447 GARAKFEYRVRHRHGHDVWLEVNPTVLYDEATGVPLGFVDVARDVTARKAVDAELAAARE 506

Query: 325 TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
             +   +   + S     +       ++         + G    LLD P L++   ++  
Sbjct: 507 QAEAARVHAELASQAKTDF----LASMSHEIRTPLSSVIGYTELLLDDPDLTEGQRLQAS 562

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
            +  +    +     +          + +  +PF         +       E     I  
Sbjct: 563 RIRSAGSALLTVVDDILDFSKIEAGQVDLDLMPFALHGLIENAVAIVRQLAERKGLEIRV 622

Query: 445 -------RKMEIEVMQLCSILEATSDGIAIINREGIILST 477
                  + +  +  +L  IL    +      R G ++  
Sbjct: 623 DIDPALPQTLVGDQNRLRQILLNFLNNALKFTRRGRVVLA 662


>gi|119472186|ref|ZP_01614388.1| sensor histidine kinase with multiple PAS/PAC and a response
           regulator receiver domain [Alteromonadales bacterium
           TW-7]
 gi|119445105|gb|EAW26399.1| sensor histidine kinase with multiple PAS/PAC and a response
           regulator receiver domain [Alteromonadales bacterium
           TW-7]
          Length = 889

 Score =  361 bits (926), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 136/670 (20%), Positives = 246/670 (36%), Gaps = 25/670 (3%)

Query: 164 AALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYD 223
           +        +EF G  G G +     +     + K   ++   L   K    +     + 
Sbjct: 92  SYSNARDYAQEFPGANGVGYIKKVTHNELAEFINKAQSERPDSLFNFKTLTENKNDH-FV 150

Query: 224 IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY 283
           I        + +                          L++  + +   +  H   L   
Sbjct: 151 IQYIFPESGNKQAIGLDIGSETIRKRAALSAVFADNAQLSAPITLVQADQKAHHGFLILL 210

Query: 284 TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY 343
              +   T  +N +           P L            E                  Y
Sbjct: 211 PIYKSKITPTSNDERLEALHGWAYSPLLIDNILNSLFDIDENYLTISDLNDATDVAFFTY 270

Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403
            NP+     K  +V  +       TL  +    +N  +        +   +   A L  +
Sbjct: 271 GNPANNTEFKVSTVTKVIGREWQITLHGSYAFLENLHLPYQYQALVNGIFLTLIAMLVVL 330

Query: 404 QWNRENSL-AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
               +    A       +A Q  +N+ +      + D ++  +++    M   SIL++ S
Sbjct: 331 AIQLQFFRKAQKENLRREAEQAHKNILEQANLKLETDVKLRTQQIADISMLQRSILDSAS 390

Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH-----YLTEIL 517
             I   +  G+I   N A  KL GY   D++ K         T            L +I+
Sbjct: 391 YSIIATDINGLITEFNPAAEKLLGYKAFDVVGKKTCSIFHVETELTSKAKQLSIELNKIV 450

Query: 518 SLDLRQTLEK---------ITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEW 564
           S      + K                + + + + + +  L  +      +     D+++ 
Sbjct: 451 SPGFETLIVKTTPTEPDVNQWTYVDSKGRHIQVSLSVTSLLNNRAQVVGFLGIAFDLTQQ 510

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
            + +  L+HAK++AE+ S  KS+FLA +SHEIRTP+  I+G  ++++ Q      N +  
Sbjct: 511 IKHEQALAHAKELAEQSSKTKSEFLANMSHEIRTPMNGILGTLQLLQEQPM----NDKST 566

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           +Y      S   +  I+ND+LD SKIE+GK++L  +   LDE +    S + + A EK I
Sbjct: 567 DYLKKALYSTRSLTTIINDILDFSKIEAGKLSLEQKVFELDELIHHLESDLLVPAQEKNI 626

Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744
            ++     +      D   ++Q+ LNI+ NAI FT  GG + +    T +E+V   V DT
Sbjct: 627 YLKFKSTIHHKYWRGDAVRIRQVFLNIIYNAIKFTHKGG-VTVEFKLTDDEQVCAIVSDT 685

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G+    + +  + F Q  +S      GTGLGLP+ K++++   G   + S    G+  
Sbjct: 686 GIGIPKNVVNRLFERFEQAESSTTREYGGTGLGLPITKSLINLMDGDIKVTSEEGVGSQF 745

Query: 805 EIIFPLYDTS 814
            +  PL    
Sbjct: 746 YVYLPLEQAD 755


>gi|20090861|ref|NP_616936.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
 gi|19915933|gb|AAM05416.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
          Length = 1000

 Score =  361 bits (926), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 102/607 (16%), Positives = 203/607 (33%), Gaps = 32/607 (5%)

Query: 225 FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYT 284
           +     PP  ++    +S  E+   + +  +  ++                HT       
Sbjct: 80  YGSAEEPPGRQVSELWASPAEFLQAERECREKGEWIGELQARRRDGTFFYVHTSLSLIRN 139

Query: 285 KKQYFGTLQNNSKESFEYLSHRNHPSLS-AYFDEGENLTPETVDKCPIPFFVYS-HGNLF 342
           ++     +  +  +                   E +      ++   +  + +    N  
Sbjct: 140 REGLPLGISGSFVDITRLKQVEEELRNRTLELSEAKARLDLALEATEMGTWDWDVLTNGM 199

Query: 343 YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN-NAIKPVMLYRSDRTCIAASARLH 401
             + +   L      + ++    L  L +     ++   +  VM   +D    +     H
Sbjct: 200 TWDDNLFRLVGISREEFLQTHDSLLELSNRILSPEDNRRMLEVMQAVADGKTDSYEFE-H 258

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
            +                  +   + +   G   +  D +I +  +      L       
Sbjct: 259 DVLRPDGTVRHFLVKGRAHRDSEGKLLRVTGTTTDITDQKIAEDALRRSEANLARSQAMA 318

Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPV-EDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520
             G    +     +  +  +  ++ Y    +   +     +       +   L       
Sbjct: 319 HLGSYSFDAHTGEIYWSEELKTIWDYDPGPNYSFETVISRIHPEDRKRILEALKNA--GQ 376

Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKK 576
            +            +  +  +    +     +        T+ DI+  K  + +L  AK+
Sbjct: 377 GKHPFNSEYGILKPDGSIRYVHDQGEISLDGNGVPVRMFGTLQDITHRKLMEEQLLKAKE 436

Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
            AE  +  K DFLA +SHEIRTP+ A++G  E++              EY      S   
Sbjct: 437 AAESANKAKGDFLANMSHEIRTPMNAVLGMLEMLLETSL----TDEQREYLQLAHASAES 492

Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP- 695
           +L I++D+LD SKIE  K+ L      L+  +S  I+L+   A  K + +      ++P 
Sbjct: 493 LLSIIDDVLDFSKIEQNKLELEQISFELESLISHIINLLSGKAGSKGLKLAFHIEKDLPS 552

Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH---------------TSNEEVILR 740
             + D   +KQ+  NIL NAI FT  G +I +S                       ++ +
Sbjct: 553 TFIGDPVRLKQVLFNILGNAIKFTKKG-EIALSVEVYMPSERNSGLSNSDFPEEVALLFK 611

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V+DTG+G+   +L +   PF Q   S      GTGLGL ++  +V+   G+ ++ S   K
Sbjct: 612 VKDTGIGIPPEKLSQIFDPFIQADASVTREYGGTGLGLAISSQLVELMEGRIWVESEVGK 671

Query: 801 GTLIEII 807
           G      
Sbjct: 672 GCTFYFT 678



 Score = 75.4 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/406 (8%), Positives = 99/406 (24%), Gaps = 50/406 (12%)

Query: 83  VRFTWNIDA----------HGYLKEISEELPKTIGN-YAFKMIGMRLCDVSDILHIDPNN 131
           VR  W  D+           G L  ++    +  G   A +  G ++ ++       P  
Sbjct: 45  VRLEWQADSAVTGLITMDFDGTLSYVNPFFVRMWGYGSAEEPPGRQVSELWAS----PAE 100

Query: 132 HIGDLLKRQ--NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRV 189
            +    + +    W G+      +GT  YV   L+   I +R     G  G   V + R+
Sbjct: 101 FLQAERECREKGEWIGELQARRRDGTFFYVHTSLSL--IRNREGLPLGISG-SFVDITRL 157

Query: 190 DNDPRALGKRLDKKFSHLHEIKKGHSSVE----------------KEKYDIFSQQSPPPH 233
                 L  R  +       +     + E                   + +         
Sbjct: 158 KQVEEELRNRTLELSEAKARLDLALEATEMGTWDWDVLTNGMTWDDNLFRLVGISREEFL 217

Query: 234 LRMKNKV-SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL 292
               + +  S        +  +      +   +  S   + D    +             
Sbjct: 218 QTHDSLLELSNRILSPEDNRRMLEVMQAVADGKTDSYEFEHDVLRPDGTVRHFLVKGRAH 277

Query: 293 QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF------FVYSHGNLFYANP 346
           +++  +           +     ++    +   + +           F    G + Y + 
Sbjct: 278 RDSEGKLLRVTGTTTDITDQKIAEDALRRSEANLARSQAMAHLGSYSFDAHTGEI-YWSE 336

Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
               +  Y    +      +S +         +  + +   ++           + I   
Sbjct: 337 ELKTIWDYDPGPNYSFETVISRI------HPEDRKRILEALKNAGQGKHPFNSEYGILKP 390

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
             +   +        +     +   G   +    ++ + ++     
Sbjct: 391 DGSIRYVHDQGEISLDGNGVPVRMFGTLQDITHRKLMEEQLLKAKE 436



 Score = 70.8 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/174 (10%), Positives = 53/174 (30%), Gaps = 11/174 (6%)

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
             +  E +        +      K  +E ++++L    ++   G+  ++ +G +   N  
Sbjct: 14  EGESIEEIRGKKRADREETEVQEKSHLEEKLVRLEWQADSAVTGLITMDFDGTLSYVNPF 73

Query: 481 VSKLFGY-PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
             +++GY   E+   +  +             +L        +           ++    
Sbjct: 74  FVRMWGYGSAEEPPGRQVSELWASP-----AEFLQAERECREKGEWIGELQARRRDGTFF 128

Query: 540 SLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
            +   +  +          S +  DI+  KQ + +L +      +    + D  
Sbjct: 129 YVHTSLSLIRNREGLPLGISGSFVDITRLKQVEEELRNRTLELSEA-KARLDLA 181


>gi|144899476|emb|CAM76340.1| sensory box histidine kinase/response regulator [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 866

 Score =  361 bits (926), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 116/611 (18%), Positives = 216/611 (35%), Gaps = 34/611 (5%)

Query: 219 KEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTI 278
                  S      H      V           +       P    +   L         
Sbjct: 2   GAGATPASVYEQAFHHCRDGLVLVDRAGIVGAANKAMAHMVPGWPFDAVGLSYFSLTGRF 61

Query: 279 NLNQYTK-----KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF 333
                 +      +      ++  +    L HR+  +     D    L  E      +  
Sbjct: 62  QTEGEWRLDLADGRVVEIRADDGGDGLVLLIHRDLTAQCRALDRLNQLESELEQSLGLAS 121

Query: 334 F----VYSHGNLFYANPSF-LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388
                +  HG + + +     +L  +     + ++  +   + A      +A    +   
Sbjct: 122 MGSWRLDHHGMMLHLSREHGAMLLGHPEAMSLPMSEFIERYVHADDWPVLSAHIAHVEEL 181

Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
                         ++ +                         G+     + +     +E
Sbjct: 182 GWPEGFTEHFEYRALRPDGRVLHMAVTSAIRSG-------QVVGVTQNITERKRMVEAVE 234

Query: 449 IEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDI-LRKPFTVFLEQNTP 506
               +L +I+E T   + I    E  +L  N +   LF  P +   +    T +      
Sbjct: 235 ANERRLRTIIETTPLPLVITRAKEAKVLYANSSFRALFDIPDDYDGVISSGTFYQHPEDR 294

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII--IKKLPFSSCYSLTMHDISEW 564
             +   L                LG T   +     +   + +L       + ++DI+  
Sbjct: 295 ERLIETL-----GRDGVVRNFEALGRTWSGRNFWASVTAAVLELDGEPSLFVAVNDITAV 349

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           K+ + +L  AK  AE  +  KS+FLA +SHEIRTP+  II  + ++ +            
Sbjct: 350 KKHEAELYAAKDAAEAAARTKSEFLAMMSHEIRTPMNGIIVMARLLLDTDLTA----EQR 405

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           ++   +  SG+ ++ ++ND+LD SK+ESGK+++   P  L   +   + L++  A EK +
Sbjct: 406 DWLEIVTSSGDTLMTVLNDILDFSKLESGKLDIEELPFDLPALIGGVVELMRARAEEKGL 465

Query: 685 LIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILR-- 740
            I   +   +P  I AD   ++Q+ LN++ NAI FT  GG  + +       +++ILR  
Sbjct: 466 SISVHYGAGVPGVIRADPTRLRQVLLNLVGNAIKFTEMGGVHLELRVERRDGDDLILRFA 525

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           VRDTG+G+    L +    F Q+ +S   R  GTGLGL + + +V+   G   + S    
Sbjct: 526 VRDTGIGIPAEALTRLFAAFSQVDSSINRRFGGTGLGLVICQRLVNLMGGSIEVDSVEGY 585

Query: 801 GTLIEIIFPLY 811
           GT      P+ 
Sbjct: 586 GTTFTFTLPVS 596


>gi|21231797|ref|NP_637714.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66768077|ref|YP_242839.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|21113508|gb|AAM41638.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66573409|gb|AAY48819.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 1364

 Score =  361 bits (926), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 115/638 (18%), Positives = 224/638 (35%), Gaps = 41/638 (6%)

Query: 214 HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE 273
            S++        S            +          +    +       T   ++ P   
Sbjct: 245 ESTLGDRDDVAISLSDREDTQHTFYRSGIAAPESMRRAAHTQLLPIYGRTWVLTARPTLH 304

Query: 274 DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF 333
              ++N N                 +   L   N         +   L            
Sbjct: 305 FIGSLNQNSPWLMGSLVLGTAILLAALLGLYFSNGLRREEVLRKQMELAALVSHSSEAIV 364

Query: 334 FVYSHGNLFYANPSFLLLTKYKSVDDIEI---------AGGLSTLLDAPKLSDNNAIKPV 384
                G + + NP+   +  Y +   I              +  +               
Sbjct: 365 AETPDGEITHWNPAAEAMFGYPADVAIGQDLTTLLSPQPYAMPQIDQDEAPPVAALSAAQ 424

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
            +   D   +   A    I    +N+++     F   ++   +  +       ++ ++ +
Sbjct: 425 TMRHRDGHQVFVLASKAPI-IEHDNAVSGHSHFFRDISERVRSHQRIVDLNASLEHQVAE 483

Query: 445 R--KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
           R  ++    +   +IL      I   +  G +   N A  KL GY  +D++ +       
Sbjct: 484 RTSELVQFSVLQRAILAHAGYAIIATDSSGFVTMFNPAAEKLLGYSADDVIGRRKASQFI 543

Query: 503 QNTPSVMNHY-LTEILSLDLRQTLEK-------------ITLGSTKEEKLLSLRIIIKKL 548
           +          L E     +  TLE                   +++ + L + + +  L
Sbjct: 544 EADELQERALRLAEQTGTPVAGTLEAVAALTSLGRSDTSEWTYVSQDGRRLPVLLTLSTL 603

Query: 549 PFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
              +     Y     D++E K  + +L  A   A   +  KSDFLA +SHEIRTP+ AI+
Sbjct: 604 RDDNDQVIGYLGVAVDLTEQKLHEKQLRLAMDAARSANQSKSDFLANMSHEIRTPMNAIL 663

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           G   +++             +    IDRS   +L+I+ND+LD SKIE+G+++L   P  L
Sbjct: 664 GMLYLLQRSELPGAA----QDMVTKIDRSARSLLEIINDILDFSKIEAGRIDLERAPFDL 719

Query: 665 DEAVSEAISLVQLYANEKRILIRTS-FANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
           ++       L++   + K + +           +L D   + Q+ +N++ NAI FT  G 
Sbjct: 720 NQLFDNIADLMRSSLSAKPVEMIVEPLPRECRWLLGDALRINQVLVNLVGNAIKFTEQG- 778

Query: 724 QIIISTTHTSNEE-----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
           ++++S     + +     ++  VRDTG+G++  +      PF Q   S   R  G+GLGL
Sbjct: 779 EVVLSVRRFPSGDPNKIKLLFSVRDTGIGISKEKQSLIFSPFLQADTSTSRRYGGSGLGL 838

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
            +++ +++   G   + S P +G+    +  L  T  P
Sbjct: 839 TISRRLIELMGGALEVESVPGRGSEFYFVITLERTDPP 876



 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/382 (9%), Positives = 87/382 (22%), Gaps = 26/382 (6%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI-------LHIDPNNHIGDLLKRQNTW 143
             G +   +       G  A   IG  L  +          +  D    +  L   Q   
Sbjct: 368 PDGEITHWNPAAEAMFGYPADVAIGQDLTTLLSPQPYAMPQIDQDEAPPVAALSAAQ--- 424

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
               T+   +G    V +  +  PI   +   SG   F                  L+  
Sbjct: 425 ----TMRHRDGHQ--VFVLASKAPIIEHDNAVSGHSHF--FRDISERVRSHQRIVDLNAS 476

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
             H  ++ +  S + +      +  +   +  +    S     +    + L       + 
Sbjct: 477 LEH--QVAERTSELVQFSVLQRAILAHAGYAIIATDSSGFVTMFNPAAEKLLGYSADDVI 534

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
               +    E            +Q    +    +      S     +    +   +    
Sbjct: 535 GRRKASQFIEADELQERALRLAEQTGTPVAGTLEAVAALTSLGRSDTSEWTYVSQDGRRL 594

Query: 324 ETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
             +           +  +       + LT+ K  +        +        SD  A   
Sbjct: 595 PVLLTLST--LRDDNDQVIGYLGVAVDLTEQKLHEKQLRLAMDAARSANQSKSDFLANMS 652

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
             +       +     L   +        +T I     +     +       +       
Sbjct: 653 HEIRTPMNAILGMLYLLQRSELPGAAQDMVTKIDRSARS----LLEIINDILDFSKIEAG 708

Query: 444 KRKMEIEVMQLCSILEATSDGI 465
           +  +E     L  + +  +D +
Sbjct: 709 RIDLERAPFDLNQLFDNIADLM 730



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/284 (8%), Positives = 62/284 (21%), Gaps = 25/284 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG--- 145
            D+ G++   +    K +G  A  +IG R               +    +      G   
Sbjct: 509 TDSSGFVTMFNPAAEKLLGYSADDVIGRRKASQFIEADELQERALRLAEQTGTPVAGTLE 568

Query: 146 -----------KTTLW-PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193
                       T+ W  +      +P+ L    +   N +  G+ G  +          
Sbjct: 569 AVAALTSLGRSDTSEWTYVSQDGRRLPVLLTLSTLRDDNDQVIGYLGVAV--DLTEQKLH 626

Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253
               +         ++ K    +    +              ++                
Sbjct: 627 EKQLRLAMDAARSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSELPGAAQDMVTKID 686

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ-------YFGTLQNNSKESFEYLSHR 306
                   + ++     + E    I+L +                  + S +  E +   
Sbjct: 687 RSARSLLEIINDILDFSKIEAGR-IDLERAPFDLNQLFDNIADLMRSSLSAKPVEMIVEP 745

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLL 350
                     +   +    V+           G +  +   F  
Sbjct: 746 LPRECRWLLGDALRINQVLVNLVGNAIKFTEQGEVVLSVRRFPS 789


>gi|21243225|ref|NP_642807.1| two-component system sensor protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21108755|gb|AAM37343.1| two-component system sensor protein [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 1364

 Score =  361 bits (926), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 129/703 (18%), Positives = 256/703 (36%), Gaps = 65/703 (9%)

Query: 164 AALPIYSRNREFSGFR-----GFGIV----HVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214
           +  P+ +     SG+R     GF ++            P+               +++  
Sbjct: 185 SGEPVMTSPISLSGYRIPNESGFLVLLAVYREGMPLQTPQQRMLATSGWVYAPFSVEQMV 244

Query: 215 SSVEKEKYDI-FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE 273
            S   E+ D+               +  +     A +  V++       T   ++ P   
Sbjct: 245 RSALGERDDVALDLSDRNEPTHNFYRSGTPASDSALRPPVVRLLPIYGRTWVITAHPTAG 304

Query: 274 DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF 333
              ++N +            +    +   L   N         +   L            
Sbjct: 305 FVASLNQSSPWLIGGLVMAASVLFAALLVLYFSNGLRREEVLRKQMELAALVSHSSEAIV 364

Query: 334 FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393
                G + + NP+   +  Y + + I+    L+TLL     + +          +D   
Sbjct: 365 AQTPDGRITHWNPAAEAMFGYTADEAIDQ--DLTTLLSPQPYAMSEVD------HADAAL 416

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK------- 446
              ++   T++    + + +                 +    +  D   + ++       
Sbjct: 417 AGNASAAQTMRHRDGHQVHVLASKAPIIESEGTLSGHSHFFRDISDRVRSHQRIIDLNAS 476

Query: 447 MEIEVMQ-----------LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
           +E +V +             +IL      I   +  G +   N A  KL GY   +++ +
Sbjct: 477 LEHQVAERTSELVKFSVLQRAILAHAGYAIIATDSGGFVTLFNPAAEKLLGYSAAEVIGR 536

Query: 496 P-FTVFLEQNTPSVMNHYLTEILSLDLRQTLEK-------------ITLGSTKEEKLLSL 541
              + F+EQ       H L E     +  TLE                   + + + L +
Sbjct: 537 RKASQFVEQEELQERAHMLAEQTGTQVAHTLEAIAALTSLGRSDTSEWTYVSHDGRRLPV 596

Query: 542 RIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
            + +  L         Y     D++E K  + +L  A   A+  +  KSDFLA +SHEIR
Sbjct: 597 LLTLSTLRDDHDQVIGYLGVAVDLTEQKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIR 656

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TP+ AI+G   +++             +    IDRS   +L+I+ND+LD SKIE+G+++L
Sbjct: 657 TPMNAILGMLYLLQRSELPGAA----QDMVAKIDRSARTLLEIINDILDFSKIEAGRIDL 712

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTS-FANNIPRILADLRSVKQIALNILSNAI 716
              P  L++       L++   + K + +       +   +L D   + Q+ +N++ NAI
Sbjct: 713 ECAPFDLNQLFDNIADLMRSSLSAKPVEMIVEPLPRDSRWLLGDALRINQVLVNLVGNAI 772

Query: 717 HFTPSGGQIIISTTHTSNEE-----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
            FT  G ++++S     + +     ++  VRDTG+G++  +      PF Q   S   R 
Sbjct: 773 KFTEQG-EVVLSVRRFPSGDPNKFKLLFSVRDTGIGISKEKQSVIFSPFLQADTSTSRRY 831

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
            G+GLGL +++ +V+   G+  + S P +G+    +  L  ++
Sbjct: 832 GGSGLGLTISRRLVELMGGELEVESVPGRGSEFYFVVTLEKSA 874



 Score = 86.2 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 51/442 (11%), Positives = 129/442 (29%), Gaps = 55/442 (12%)

Query: 169 YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228
               REF G  G+G +H  RV     A   +  +        ++  +  + E+Y +   +
Sbjct: 99  RDYPREFPGVLGYGYIH--RVAPADEAAFLQAARADGAPDIHRRPLAPWDGERYMVLYFE 156

Query: 229 SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288
                 R      +                 P++TS            +++  +   +  
Sbjct: 157 PESSGNRPLGIDIASEPRRRAAALQAARSGEPVMTSPI----------SLSGYRIPNESG 206

Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSF 348
           F  L    +E     + +                           +VY+  ++     S 
Sbjct: 207 FLVLLAVYREGMPLQTPQQR-------------------MLATSGWVYAPFSVEQMVRSA 247

Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
           L      ++D  +          +   + ++A++P ++       +    R   I  +  
Sbjct: 248 LGERDDVALDLSDRNEPTHNFYRSGTPASDSALRPPVVR-----LLPIYGRTWVITAHPT 302

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDV----DTRINKRKMEIEVMQLCSILEATSDG 464
                +             M  + +    +       + + ++  + M+L +++  +S+ 
Sbjct: 303 AGFVASLNQSSPWLIGGLVMAASVLFAALLVLYFSNGLRREEVLRKQMELAALVSHSSEA 362

Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
           I     +G I   N A   +FGY  ++ + +  T  L           +    +      
Sbjct: 363 IVAQTPDGRITHWNPAAEAMFGYTADEAIDQDLTTLLSP--QPYAMSEVDHADAALAGNA 420

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEK 580
               T+   ++   + +      +  S            DIS+  +   ++       E 
Sbjct: 421 SAAQTM-RHRDGHQVHVLASKAPIIESEGTLSGHSHFFRDISDRVRSHQRIIDLNASLEH 479

Query: 581 ESSHKSDFL--------ARVSH 594
           + + ++  L        A ++H
Sbjct: 480 QVAERTSELVKFSVLQRAILAH 501



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 27/283 (9%), Positives = 68/283 (24%), Gaps = 23/283 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMR----------LCDVSDILHIDPNNHIGDLLK 138
            D+ G++   +    K +G  A ++IG R          L + + +L       +   L+
Sbjct: 509 TDSGGFVTLFNPAAEKLLGYSAAEVIGRRKASQFVEQEELQERAHMLAEQTGTQVAHTLE 568

Query: 139 RQNTW----YGKTTLW-PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193
                       T+ W  +      +P+ L    +   + +  G+ G  +          
Sbjct: 569 AIAALTSLGRSDTSEWTYVSHDGRRLPVLLTLSTLRDDHDQVIGYLGVAV--DLTEQKLH 626

Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253
               +         ++ K    +    +              ++                
Sbjct: 627 EKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSELPGAAQDMVAKID 686

Query: 254 LKTEKYPLLTSEESSLPEQEDFH------TINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
                   + ++     + E           +LNQ           + S +  E +    
Sbjct: 687 RSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQLFDNIADLMRSSLSAKPVEMIVEPL 746

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLL 350
                    +   +    V+           G +  +   F  
Sbjct: 747 PRDSRWLLGDALRINQVLVNLVGNAIKFTEQGEVVLSVRRFPS 789



 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 32/375 (8%), Positives = 81/375 (21%), Gaps = 12/375 (3%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150
             G +   +       G  A + I   L  +        +                 T+ 
Sbjct: 368 PDGRITHWNPAAEAMFGYTADEAIDQDLTTLLSPQPYAMSEVDHADAALAGNASAAQTMR 427

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
             +G  ++  +  +  PI       SG   F                  L+    H  ++
Sbjct: 428 HRDGHQVH--VLASKAPIIESEGTLSGHSHF--FRDISDRVRSHQRIIDLNASLEH--QV 481

Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270
            +  S + K      +  +   +  +          +    + L       +     +  
Sbjct: 482 AERTSELVKFSVLQRAILAHAGYAIIATDSGGFVTLFNPAAEKLLGYSAAEVIGRRKASQ 541

Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330
             E            +Q    + +  +      S     +    +   +      +    
Sbjct: 542 FVEQEELQERAHMLAEQTGTQVAHTLEAIAALTSLGRSDTSEWTYVSHDGRRLPVLLTLS 601

Query: 331 IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390
                  H  +       + LT+ K  +        +        SD  A     +    
Sbjct: 602 T--LRDDHDQVIGYLGVAVDLTEQKLHEKQLRLAMDAAKSANQSKSDFLANMSHEIRTPM 659

Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450
              +     L   +        +  I           +       +       +  +E  
Sbjct: 660 NAILGMLYLLQRSELPGAAQDMVAKID----RSARTLLEIINDILDFSKIEAGRIDLECA 715

Query: 451 VMQLCSILEATSDGI 465
              L  + +  +D +
Sbjct: 716 PFDLNQLFDNIADLM 730


>gi|148263634|ref|YP_001230340.1| multi-sensor signal transduction histidine kinase [Geobacter
           uraniireducens Rf4]
 gi|146397134|gb|ABQ25767.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter
           uraniireducens Rf4]
          Length = 592

 Score =  361 bits (926), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 114/578 (19%), Positives = 220/578 (38%), Gaps = 30/578 (5%)

Query: 233 HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL 292
              +K+ +++ T   A        + Y    +  +++ ++              +  G  
Sbjct: 37  LAEIKDNLTNETRMAALMAGREGGDLYHDAQAIAAAIGKEVKARVT--IIARNGEVVGDS 94

Query: 293 QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLL 351
           Q  + E     +H+N P + A   EG   +         P   V     L       + L
Sbjct: 95  QVKADELKGLENHQNRPEILAAQKEGTGSSIRYSSTLQTPMLYVARPLELKNGERVTIRL 154

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411
                   ++    + T+L         A        S+ T  +  A         +   
Sbjct: 155 -ALPLEQLVKARSTIHTILGVAMALALLASLLFSYVLSNFTSRSLRAMASIASRIGKGEY 213

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471
            +   P +  ++  E           ++ ++ +  +  E  +L +IL    +G+ + + +
Sbjct: 214 GLRV-PVKGRDELGELAMIMNDMSVRIEGQLAR--ISTERNRLDTILRGMGEGLMVTDAK 270

Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
           G I   N A   L     E++  +P    ++      ++     I++    +   +    
Sbjct: 271 GTITLVNPAFRDLLAIT-EEVEGRPL---IDITRHPALHSAYKTIIASKSERL--EEITL 324

Query: 532 STKEEKLLSLRIIIKKLPFS-SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
             K EK +    +               HDIS  K+ +                + DF+A
Sbjct: 325 DAKGEKTILTHWVPLLDGDRLQGVVAVFHDISNIKRLE--------------KIRRDFVA 370

Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650
            VSHE+RTP+T I G++E + +         R + +   I      +  ++ DLL +S++
Sbjct: 371 NVSHELRTPVTVIKGYAETLLSGALAS-DPERAVRFVEIIHSHSERLTSLIGDLLTLSEL 429

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710
           ESG ++L    V+++  V  A+ L++  A +K I I  S     P IL D   ++Q+ +N
Sbjct: 430 ESGDVSLELSMVNIEGTVRHALMLLEQKAADKGITIDCSTIKAAPPILGDRGRLEQVLIN 489

Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           +L NAI +TP  G I +         + + V DTG+G+   +L +  + F ++  ++   
Sbjct: 490 LLDNAIKYTPEKGTITVKAADEEK-MLKISVTDTGMGIPPKDLPRIFERFYRVDEARSRE 548

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
             GTGLGL + K +V A+ G   + ST  KG+      
Sbjct: 549 QGGTGLGLSIVKHIVQAHGGALSVESTVGKGSTFSFTL 586


>gi|261210923|ref|ZP_05925213.1| hypothetical protein VCJ_001178 [Vibrio sp. RC341]
 gi|260839898|gb|EEX66498.1| hypothetical protein VCJ_001178 [Vibrio sp. RC341]
          Length = 1324

 Score =  361 bits (926), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 105/375 (28%), Positives = 175/375 (46%), Gaps = 12/375 (3%)

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
            R+ +RK+  +      IL+AT + +  +N EG+ L+ N     L G   ++++ K    
Sbjct: 460 QRLAERKVLEQSQLNQEILDATPNPMYCLNPEGLYLTVNAKFLDLVGLARQEVIGKSPYD 519

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLT 557
                     +     +      +  E   L    E++ L +                  
Sbjct: 520 IFTPAASQCFSEAHRALALQQTSRNYEVSLLDQKGEQRELLVYEASFGDQREQVHGIVGI 579

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
           + D++E K+ + +L  AKK+A+  S  K DFLA +SHEIRTP+ AI+G + +  N     
Sbjct: 580 LLDLTERKRMEEELRDAKKMADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDT 639

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
                  +Y   I+ S   +L I+ND+LD SK+E+GK+++     +LD+ +   IS++ L
Sbjct: 640 T----QRKYVTRINESAKNLLGIINDILDFSKMEAGKLHVERIDFNLDDVLDNLISVISL 695

Query: 678 YANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
            A EK I        +IP  ++ D   + Q+ +N+  NA+ FT  G +I+IS       E
Sbjct: 696 KAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTHQG-EIVISARVRQLNE 754

Query: 737 ----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
               +   V+DTG+G+T  +L      F Q  NS   +  GTGLGL ++K +V+   G+ 
Sbjct: 755 QQVTLFFAVKDTGIGITQEKLAGLFNAFSQADNSITRQYGGTGLGLSISKQLVELMGGEI 814

Query: 793 YIFSTPAKGTLIEII 807
              S   KG+  E  
Sbjct: 815 SAHSEEGKGSTFEFS 829



 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/144 (11%), Positives = 39/144 (27%), Gaps = 5/144 (3%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + ++  G    ++ +    +G    ++IG    D+         +     L  Q T   
Sbjct: 485 MYCLNPEGLYLTVNAKFLDLVGLARQEVIGKSPYDIFTPAASQCFSEAHRALALQQTSRN 544

Query: 146 -KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            + +L   +G    + +       +   RE       GI+             +   K  
Sbjct: 545 YEVSLLDQKGEQRELLV---YEASFGDQREQVHGI-VGILLDLTERKRMEEELRDAKKMA 600

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQ 228
             + + K    +    +       
Sbjct: 601 DAMSQAKGDFLANMSHEIRTPMNA 624



 Score = 41.9 bits (97), Expect = 0.39,   Method: Composition-based stats.
 Identities = 30/246 (12%), Positives = 63/246 (25%), Gaps = 33/246 (13%)

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
            +   E      L+          L + S       +            E   L  E +D
Sbjct: 420 PIALLELGTVGMLSPQHYHWLSQMLDDLSVAIQLTQNAELQRLAERKVLEQSQLNQEILD 479

Query: 328 KCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
             P P   +   G     N  FL L      + I  +        A     + A + + L
Sbjct: 480 ATPNPMYCLNPEGLYLTVNAKFLDLVGLARQEVIGKSP-YDIFTPAASQCFSEAHRALAL 538

Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
            ++ R     +  +  +    E    + +      +Q  +     GI  +  + +  + +
Sbjct: 539 QQTSR-----NYEVSLLDQKGEQRELLVYEASFG-DQREQVHGIVGILLDLTERKRMEEE 592

Query: 447 MEIEVMQLCSI-------LEATS-------DGIAI---------INREGI--ILSTNRAV 481
           +        ++       L   S       + I           ++      +   N + 
Sbjct: 593 LRDAKKMADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINESA 652

Query: 482 SKLFGY 487
             L G 
Sbjct: 653 KNLLGI 658


>gi|158121175|gb|ABW17001.1| two-component sensor histidine kinase [Bacillus subtilis]
          Length = 579

 Score =  361 bits (926), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 89/372 (23%), Positives = 172/372 (46%), Gaps = 23/372 (6%)

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
           D     R  E++  +L +++E    G+ +I+  G I   NR+ +K F      +LR+ + 
Sbjct: 221 DLMEMTRTQEMQRDRLLTVIENIGSGLIMIDGRGFINLVNRSYAKQFHINPNHMLRRLYH 280

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSL 556
              E      +   + +I   + ++           E +   +  +    P        L
Sbjct: 281 DAFEHE---EVIQLVEDIFMTETKKCKLLRLPIKI-ERRYFEVDGVPIMGPDDEWKGIVL 336

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
             HD++E K+ +                + DF+A VSHE++TP+T+I GF+E + +    
Sbjct: 337 VFHDMTETKKLE--------------QMRKDFVANVSHELKTPITSIKGFTETLLDGAM- 381

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
                   E+ + I +    +  +V DLLD+SKIE     L  E     + + E  +L++
Sbjct: 382 -EDKEALSEFLSIILKESERLQSLVQDLLDLSKIEQQNFTLSIETFDPAKMLGEIETLLK 440

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
             A+EK I ++ +   +   +  D   +KQ+ LN+++NA+ +TP GG + I+      + 
Sbjct: 441 HKADEKGISLQLNVPKDPQYVSGDPYRLKQVFLNLVNNALTYTPEGGSVAINVKPRERD- 499

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           + + V D+G+G+   E+ +  + F ++   +     GTGLGL + K +++A+ GK  + S
Sbjct: 500 IQIEVADSGIGIQKEEIPRIFERFYRVDKDRSRNSGGTGLGLAIVKHLIEAHEGKIDVTS 559

Query: 797 TPAKGTLIEIIF 808
            P +GT+  +  
Sbjct: 560 EPGRGTVFTVTL 571


>gi|225874369|ref|YP_002755828.1| two-component hybrid sensor and regulator [Acidobacterium
           capsulatum ATCC 51196]
 gi|225791644|gb|ACO31734.1| two-component hybrid sensor and regulator [Acidobacterium
           capsulatum ATCC 51196]
          Length = 799

 Score =  361 bits (926), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 107/641 (16%), Positives = 209/641 (32%), Gaps = 45/641 (7%)

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP---PPHLRMKNKVS 241
              R                S + +       V      I                  V 
Sbjct: 172 RSARARQRVERALTVERNFVSAVLDTMSALVLVLDTSGRIVRFNRSCEEISGYSFAELVG 231

Query: 242 SLTEYYAHKDDVLKTEKYPLLTSEESSLPE--QEDFHTINLNQYTKKQYFGTLQNNSKES 299
                     +  +  +     + + +L E  +  + T             TL + + E 
Sbjct: 232 RSFIREMFSPEDRERAQQLFEQARQGALQETWEMRWRTRGGGVRRIAWASTTLADPAGEV 291

Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP----FFVYS-HGNLFYANPSFLLLTKY 354
              +      +L         L+     +           +   G L   N        Y
Sbjct: 292 NFVILTGMDVTLQVEAQNALRLSETRYRQLVEGSLGMVCTHDVEGRLLSINAHAAESLGY 351

Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
            S +    AG        P+     A     +  +          + +++        +T
Sbjct: 352 TSEEM---AGRKLVEFIPPQHRPGWAEYLKAINETGEHQG-----MLSLRRKDGGVCVIT 403

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII 474
           +          E     G   +  +    + ++     Q  SIL +  DGI  ++ EG I
Sbjct: 404 YRNKLVHFPDMEPF-VLGHGVDVTEKNEAEHRLRNLTRQRESILGSVGDGIFGMDMEGRI 462

Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP-----SVMNHYLTEILSLDLRQTLEKIT 529
              NRA   + GY  E++  +     L  +        V    + +   LD    ++   
Sbjct: 463 TFVNRAALDMVGYEEEEVSGRDMHALLHHSRADGTPYPVDLCPIYKARQLDSPMRVDDEV 522

Query: 530 LGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
               K+     +  +   L  +       +   DI+E ++                  K 
Sbjct: 523 FW-HKDGTCFPVEYVACPLVDNGRVSGIVIAFQDITERQRL--------------DRMKD 567

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
           +F++ VSHE+RTPLT++     +I           +  +  +    + + ++ +VND+LD
Sbjct: 568 EFISTVSHELRTPLTSLRAALGLIAGGALQRRP-EKVQQMFDVAIGNCDRLVRLVNDILD 626

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706
             ++ SGKM L +  +   + +  A+ L    A +  I +R         +  D   + Q
Sbjct: 627 FERLGSGKMQLQYVQMPARDLLQRAVDLQHSSAQKANITLRVEAEP--MDLWVDADRILQ 684

Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
              N++SNAI F+P+G  +++  +     E ++ VRD G G+   ++    + F Q+  S
Sbjct: 685 TLGNLISNAIKFSPAGADVLVRASVRGKAEAVIEVRDHGRGIPPEKISLIFERFQQVDAS 744

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
                 GTGLGL + + +V  + G+ ++ S   KG+     
Sbjct: 745 DSRAMGGTGLGLAICRRIVRQHGGQIWVESEVGKGSSFFFT 785



 Score = 77.8 bits (190), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 36/387 (9%), Positives = 87/387 (22%), Gaps = 31/387 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRL-CDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
           +D  G +   +    +  G    +++G     ++      +    + +  ++        
Sbjct: 205 LDTSGRIVRFNRSCEEISGYSFAELVGRSFIREMFSPEDRERAQQLFEQARQGALQETWE 264

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA--LGKRLDKKFS 205
             W   G  +   I  A+  +     E +    F I+    V     A    +  + ++ 
Sbjct: 265 MRWRTRGGGVR-RIAWASTTLADPAGEVN----FVILTGMDVTLQVEAQNALRLSETRYR 319

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQ--SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
            L E   G       +  + S    +         +++                   L  
Sbjct: 320 QLVEGSLGMVCTHDVEGRLLSINAHAAESLGYTSEEMAGRKLVEFIPPQHRPGWAEYLKA 379

Query: 264 SEESSLPEQEDFHTINLN----QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
             E+   +                 + +               +                
Sbjct: 380 INETGEHQGMLSLRRKDGGVCVITYRNKLVHFPDMEPFVLGHGVDVTEKNEAEHRLRNLT 439

Query: 320 NLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEI---------------- 362
                 +       F     G + + N + L +  Y+  +                    
Sbjct: 440 RQRESILGSVGDGIFGMDMEGRITFVNRAALDMVGYEEEEVSGRDMHALLHHSRADGTPY 499

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
              L  +  A +L     +   + +  D TC         +  N   S  +         
Sbjct: 500 PVDLCPIYKARQLDSPMRVDDEVFWHKDGTCFPVEYVACPLVDNGRVSGIVIAFQDITER 559

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEI 449
           Q  + M    I     + R     +  
Sbjct: 560 QRLDRMKDEFISTVSHELRTPLTSLRA 586



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/337 (12%), Positives = 90/337 (26%), Gaps = 33/337 (9%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI--------GDLL 137
            + +D  G +  ++      +G    ++ G  +  +      D   +            L
Sbjct: 453 IFGMDMEGRITFVNRAALDMVGYEEEEVSGRDMHALLHHSRADGTPYPVDLCPIYKARQL 512

Query: 138 KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG 197
                   +   W  +GT    P++  A P+   N   SG     IV   +   + + L 
Sbjct: 513 DSPMRVDDE-VFWHKDGTCF--PVEYVACPLVD-NGRVSG-----IVIAFQDITERQRLD 563

Query: 198 KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT- 256
           +  D+  S +    +   +  +    + +        R   KV  + +      D L   
Sbjct: 564 RMKDEFISTVSHELRTPLTSLRAALGLIAG---GALQRRPEKVQQMFDVAIGNCDRLVRL 620

Query: 257 ----EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
                 +  L S +  L   +      L +    Q+    + N     E           
Sbjct: 621 VNDILDFERLGSGKMQLQYVQMPARDLLQRAVDLQHSSAQKANITLRVEAEPMDLWVDAD 680

Query: 313 AYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                  NL    +   P    V    ++     + + +  +      E    +      
Sbjct: 681 RILQTLGNLISNAIKFSPAGADVLVRASVRGKAEAVIEVRDHGRGIPPEKISLIFERFQQ 740

Query: 373 PKLSDNNAIK--------PVMLYRSDRTCIAASARLH 401
              SD+ A+            + R     I   + + 
Sbjct: 741 VDASDSRAMGGTGLGLAICRRIVRQHGGQIWVESEVG 777


>gi|254444664|ref|ZP_05058140.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
 gi|198258972|gb|EDY83280.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
          Length = 810

 Score =  361 bits (926), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 99/523 (18%), Positives = 218/523 (41%), Gaps = 38/523 (7%)

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-------LFYANPSFLLLTKYKSVD 358
            + P      +    +     D  P    + + G+       +   N +   +  Y   +
Sbjct: 12  PDSPDFLKSDNAQAGILKALWDNSPYGIIIIAKGSDPKQPIVIGDCNQATCQMHGYTREE 71

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
            I     +  +   P               S +     +      + +    +    +  
Sbjct: 72  LIGQ--SMDLIHAVPWTHAIEDN----YLESMQGTPPVTGESLHRRKDGSTFMIEFTVTH 125

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
              +  P  +  +       +    +  +     +  + +E++ +GI   +    I+ T+
Sbjct: 126 TLIDGVPCAIGFDRAISAGTEQ---ENTLHEIGNRWMNAMESSDEGIWDFDVPNGIVWTS 182

Query: 479 RAVSKLFGYPV--EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
                + GYP   ++   +  T  +  +  +     L ++ S   ++ L+        + 
Sbjct: 183 HRWQSILGYPPLPKEYQIEEITERVHPDDRNQFQQNLNDVRSSQTKR-LDIEVRFQNSQN 241

Query: 537 KLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
               LR+  K    S         +M D+++ K+++  L  A+  AE  +  KS FLA +
Sbjct: 242 TWTWLRLRGKVAHDSHGDANRLLGSMTDVTQRKRDEQALQVARDKAESANRAKSQFLAVM 301

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHEIRTP+  ++G + ++ + +     +     Y   I+ SG  +L+I++++L  SK+E+
Sbjct: 302 SHEIRTPMNGVMGMAALLASTKL----DEEQSAYLRTIESSGESLLNIIDEVLSFSKLEA 357

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNI 711
           G + L     ++ E ++ A+ ++   A EK + +  +  +++P +++ D   +KQ+ +N+
Sbjct: 358 GNIELEQNAFNIGECLTSALQIISPMAKEKGLELILNIDSSLPLQVIGDESKIKQVLVNL 417

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEE---------VILRVRDTGVGMTNYELEKAMKPFGQ 762
           L NA+ FT +G +I +     ++E+         + L VRDTG+G++   ++   +PF Q
Sbjct: 418 LGNAVKFTHAG-EIELRAKAENHEDPTTGENTKLIKLTVRDTGIGISPDAIKSLFEPFTQ 476

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
              S   R  GTGLGL +++++++   G   I S P +G+   
Sbjct: 477 EDASTTRRYGGTGLGLAISRSLLELMGGAIEIDSAPGEGSTFT 519



 Score = 42.3 bits (98), Expect = 0.30,   Method: Composition-based stats.
 Identities = 18/242 (7%), Positives = 68/242 (28%), Gaps = 12/242 (4%)

Query: 98  ISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPIEGTN 156
            ++   +  G    ++IG  +  +  +       ++  + ++      G++     +G+ 
Sbjct: 57  CNQATCQMHGYTREELIGQSMDLIHAVPWTHAIEDNYLESMQGTPPVTGESLHRRKDGST 116

Query: 157 LYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSS 216
             +   +    I   +       GF    ++        L +  ++  + +    +G   
Sbjct: 117 FMIEFTVTHTLI---DG-VPCAIGFDRA-ISAGTEQENTLHEIGNRWMNAMESSDEGIWD 171

Query: 217 VEKEKYDIFSQQSPPPHLRMK----NKVSSLTEYYAHKDDVLKTEK--YPLLTSEESSLP 270
            +     +++       L                  H DD  + ++    + +S+   L 
Sbjct: 172 FDVPNGIVWTSHRWQSILGYPPLPKEYQIEEITERVHPDDRNQFQQNLNDVRSSQTKRLD 231

Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330
            +  F          +       ++  ++   L      +     ++   +  +  +   
Sbjct: 232 IEVRFQNSQNTWTWLRLRGKVAHDSHGDANRLLGSMTDVTQRKRDEQALQVARDKAESAN 291

Query: 331 IP 332
             
Sbjct: 292 RA 293


>gi|150392090|ref|YP_001322139.1| multi-sensor signal transduction histidine kinase [Alkaliphilus
           metalliredigens QYMF]
 gi|149951952|gb|ABR50480.1| multi-sensor signal transduction histidine kinase [Alkaliphilus
           metalliredigens QYMF]
          Length = 790

 Score =  361 bits (926), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 102/647 (15%), Positives = 233/647 (36%), Gaps = 32/647 (4%)

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL--- 243
            R     +       ++     E       V  +    F++  P     M    + L   
Sbjct: 118 TRGQLKKQIKQLEERQRNLEHAEATSNVIVVYTDLEGTFTKVPPGFCKIMGYTEAELLNK 177

Query: 244 ---TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF 300
                 +     +       L+  E++++   + +   +             +++     
Sbjct: 178 NYKEITHGEDLQISVENTDSLIRGEKTAIKMDKRYIRKDGQIIWVDLNESVARDHYGNPC 237

Query: 301 EYLSHRNHPSLSA----YFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYK 355
             L++    +         +E E       D         +  G + YA+PS  + T Y+
Sbjct: 238 YLLAYIRDITEEKRMKNALEESEMKLRRITDNISDMIVETTMDGIIRYASPSNKVSTGYE 297

Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
             + I  +      +      D+     + + +       +   +         +     
Sbjct: 298 VEEMIGES------ILEKMHPDDIDKVKITMEKLKEDLTWSKVEVRCQHRQGHYAWIEIM 351

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
                 +             +  + +  +  +     +  S+ E + D I++ N E   +
Sbjct: 352 GNVLIGDNDG-ASGLIFCARDISERKKVEMDLYESEERYRSLFENSPDAISVYNDE-KFI 409

Query: 476 STNRAVSKLFGY-PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
             NRA +KL G    + ++ +    F+  ++         EI    +             
Sbjct: 410 LANRAAAKLVGLKDPKQLIGRSVMDFIHSSSYEKKLEATEEIKIGKVEPGYFTEEKIVDI 469

Query: 535 EEKLLSLRI--IIKKLPFSSCYSLTMHDISEWKQEK------NKLSHAKKIAEKESSHKS 586
             +++ + +   +          +   DIS+ K+ +       +        ++    K+
Sbjct: 470 YGRVIDVEVGCSLLSYNGRMAVQVVSRDISDRKRAEILEKHMAQKQQLIHEMQECDRLKT 529

Query: 587 DFLARVSHEIRTPLTAIIGFSEVI---KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
           +F + +SHE+RTPL  I+G  +++    N+           ++   + ++   +L +VN+
Sbjct: 530 EFFSNISHELRTPLNVILGSLQLMNLYTNKEASMTYPNNLSKHVGIMRQNSYRLLRLVNN 589

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703
           L+D++KI+SG   +  +  ++   V E    V  +   ++I +          I  D   
Sbjct: 590 LIDMTKIDSGFCEMQLQNHNIVSIVEEITLSVAAFIENRQITLLFDTEVEERMIACDPDK 649

Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
           +++I LN+LSN++ FT  GGQI +         V++ ++DTG+G+   +L+   + F Q 
Sbjct: 650 IERIILNLLSNSVKFTNYGGQITVYIE-EIEGNVVISIKDTGIGIETEKLDMIFQRFRQA 708

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            +    R EG+G+GL LAK++++   G   + S   +G+   + FP+
Sbjct: 709 DDLLTRRNEGSGIGLSLAKSLIELQGGTISVTSEYGRGSEFTVTFPI 755



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 36/383 (9%), Positives = 91/383 (23%), Gaps = 17/383 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            D  G   ++     K +G    +++     +++    +  +    D L R      K  
Sbjct: 150 TDLEGTFTKVPPGFCKIMGYTEAELLNKNYKEITHGEDLQISVENTDSLIRGEKTAIKMD 209

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
              I      + +DL                    +     +   +   +  + K   + 
Sbjct: 210 KRYIRKDGQIIWVDLNESVARDHYGNPCYL--LAYIRDITEEKRMKNALEESEMKLRRIT 267

Query: 209 EIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
           +              I              ++  +        H DD+ K +       E
Sbjct: 268 DNISDMIVETTMDGIIRYASPSNKVSTGYEVEEMIGESILEKMHPDDIDKVKITMEKLKE 327

Query: 266 ESSLPEQEDF-HTINLNQYTKKQYFGTL----QNNSKESFEYLSHRNHPSLSAYFDEGEN 320
           + +  + E        +    +     L       S   F          +     E E 
Sbjct: 328 DLTWSKVEVRCQHRQGHYAWIEIMGNVLIGDNDGASGLIFCARDISERKKVEMDLYESEE 387

Query: 321 LTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
                 +  P    VY+      AN +   L   K    +     +  +  +       A
Sbjct: 388 RYRSLFENSPDAISVYNDEKFILANRAAAKLVGLKDPKQLIGRSVMDFIHSSSYEKKLEA 447

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
            + + + + +         +            +          +   M    +  +  D 
Sbjct: 448 TEEIKIGKVEPGYFTEEKIV------DIYGRVIDVEVGCSLLSYNGRMAVQVVSRDISDR 501

Query: 441 RINKRKMEIEVMQLCSILEATSD 463
           +  +  +E  + Q   ++    +
Sbjct: 502 KRAEI-LEKHMAQKQQLIHEMQE 523


>gi|319403897|emb|CBI77483.1| two-component sensor histidine kinase [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 769

 Score =  361 bits (926), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 125/506 (24%), Positives = 224/506 (44%), Gaps = 53/506 (10%)

Query: 342 FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401
            Y + +   +  Y+  + +     ++ ++D    +     + +M  +     I       
Sbjct: 281 VYWSRAMYEMLGYEPQNALLSISQITAIIDPKDANFFELAQELMESKKKHIDINV----- 335

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
            ++    + + M         + P      GI  +  +      +     +++   +E  
Sbjct: 336 PMRHAEGHYVWMRIRAEVTDEEEP---HLVGISFDISEQHQFAEQTAQADLRIRDAIENI 392

Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
           S+   + + EG ++ +N    +    P + +        +E  +   ++ Y  +I     
Sbjct: 393 SESFVLWDSEGRLVMSNSKFCEYAAIPKQMLQSGIERATVEAMSRPAISEYPLKIDESG- 451

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK----------- 570
                  ++  T     L +    ++            DISE KQ++ K           
Sbjct: 452 ----NLTSIRQTANGYWLKIN---ERRTQDGGLVCVGTDISELKQQQEKFEDSERRLFSF 504

Query: 571 ------------------------LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
                                   L   K+ AE  +  KS+FLA +SHE+RTPL AI+GF
Sbjct: 505 IQELKRARGNAQQRATEVEKLNKSLQEEKERAESANKAKSEFLANISHELRTPLNAILGF 564

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
           SE++    FGPLG+ RY EY + I  SG  +L ++ND+LD+SKIE+G+  L  + ++L+ 
Sbjct: 565 SEIMLQSTFGPLGSQRYKEYMHDIHNSGTHLLTLINDILDMSKIEAGRFTLDRKNINLEP 624

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726
            +SE I  +   A  K+I + T+    +     D R++KQI LN++SNA+ FTPSGG I 
Sbjct: 625 IISETIRTLTPQAQAKKISLTTNIEQKL-HADVDCRAMKQIFLNLISNAVKFTPSGGSID 683

Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
           I      N  +I  ++DTGVG+    ++K  +PF Q+ N       G+GLGL +++++++
Sbjct: 684 IR-AFQKNNNLIFSIKDTGVGIPQEAIKKLGQPFEQVENQFTKTHPGSGLGLAISRSLLE 742

Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLYD 812
            + GK  I S   KGT++ II P+  
Sbjct: 743 LHKGKLEITSKEGKGTIVTIIMPIQQ 768


>gi|295706849|ref|YP_003599924.1| two-component sensor histidine kinase PhoR [Bacillus megaterium DSM
           319]
 gi|294804508|gb|ADF41574.1| two-component sensor histidine kinase PhoR [Bacillus megaterium DSM
           319]
          Length = 590

 Score =  360 bits (925), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 88/364 (24%), Positives = 169/364 (46%), Gaps = 25/364 (6%)

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
           E++  +L +++E    G+ +I+  G I   NRA  + F    +D L   +    E     
Sbjct: 242 EMQQDRLRTLIENMGSGMLLIDSRGYINLVNRAYKEQFHIHPDDFLYHLYYEVFEH---K 298

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWK 565
            +   + +I   ++ +  +++ L    E +   +                L  HDI+E K
Sbjct: 299 EIIKLVEKIFMTEV-KVRKQVVLPLNIERRYFDVYGAPIIGLNDEWKGIVLVFHDITELK 357

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + +                + DF+A VSHE++TP+T+I GFSE + +   G + +P+  +
Sbjct: 358 KLEQV--------------RRDFVANVSHELKTPITSIKGFSETLLD---GAMEDPQLRQ 400

Query: 626 -YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
            + + I      +  ++ DLLD+SK+E     L    V L+  + E  +++   A EK I
Sbjct: 401 QFLSIILTESQRMESLIQDLLDLSKVEQQGFKLSIHSVDLNTLLYEVTTVLSNRATEKEI 460

Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744
            +          I  D + + Q+ +N++ NA+ +T  GG + +S      E + + V+DT
Sbjct: 461 TLTLDTLPEEAWIDGDSQRLMQVFVNLIGNALMYTMPGGTVHVSLE-EEEETITVHVQDT 519

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G+ + E+ +  + F ++  ++     GTGLGL + K +V+A+ G+  + S   KGT  
Sbjct: 520 GIGIDSDEISRIFERFYRVDKARSRNSGGTGLGLAIVKHLVEAHKGEIEVKSEVNKGTTF 579

Query: 805 EIIF 808
            +  
Sbjct: 580 SVKL 583


>gi|323139164|ref|ZP_08074220.1| PAS/PAC sensor hybrid histidine kinase [Methylocystis sp. ATCC
           49242]
 gi|322395547|gb|EFX98092.1| PAS/PAC sensor hybrid histidine kinase [Methylocystis sp. ATCC
           49242]
          Length = 787

 Score =  360 bits (925), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 95/655 (14%), Positives = 211/655 (32%), Gaps = 45/655 (6%)

Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255
             +  ++    + +    H ++      I +   P    R   +  +  E      + L 
Sbjct: 8   AERTAEELVRGILDSLPQHIALLDRDGVILAVNEP--WRRFARQGGARPEAVLEGANYLA 65

Query: 256 TEKYPLLTSEESSLPEQ----------------EDFHTINLNQYTKKQYFGTLQ------ 293
             +    T + ++                    E        +   + +           
Sbjct: 66  ACRAAAETGDATAREALAGLTKLFSGACDAFTFEYPCATPERELWFEMHASRAAFGVSKF 125

Query: 294 --NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH--GNLFYANPSFL 349
             +++  +    +                     +D  PI   +     G+    N +  
Sbjct: 126 VVSHADVTTRKNAEEALRESERRERRHAAELEAILDTVPIGVSIALDPRGDHMRGNRACE 185

Query: 350 LLTKYKSVDDIE-IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
            L       ++   A     L    +    +  +  +        ++    +  I     
Sbjct: 186 ELLGTTPGAELSMTAPDAPALRVFRQGRKLSVDELPLQRALAGELVS---DILEIVRPDG 242

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468
            ++ +         +  E     G   +    +  +  +     +  +++EA  DG+ + 
Sbjct: 243 RTVTVYAKAAPLHYENGETNGAVGAFLDITSLKRAEEALRESEERHRTLIEALGDGVFVA 302

Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528
            ++   +  N A+  + GY   +    PF   +      + N    + +           
Sbjct: 303 -QDYRFVFANAALPAMLGYTPAEFWDMPFDKVIAPECLPLWNERFAQRIGDGPEPPGNYE 361

Query: 529 TLGSTKEEKL---LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
                K       + LR    +          + D++E K+ +  L             K
Sbjct: 362 ARAVPKSGGPPIDMELRARRIQYRGRPAVLGVLRDVTERKKTEQAL-------IAADRRK 414

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
            +FLA ++HE+R PL  I   + V++                  IDR    ++ +V++LL
Sbjct: 415 DEFLATLAHELRNPLAPIHDAAHVLRRMSLTGPDGENSRALVEIIDRQVGHLIRLVDELL 474

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
           ++S+I  GK+ L  E + L   + +A+   +   +     +R    +    + AD   + 
Sbjct: 475 EVSRITRGKIELMIERIDLAAVIRQAVETSRPVIDRGGHALRVELPDAPLPLDADPVRMT 534

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           Q+  N+L+NA  +T  GG+I++        E ++ V D+G+G+    L +    F Q+  
Sbjct: 535 QVFTNLLNNAAKYTEPGGEIVVRADRR-GREAVITVTDSGLGIPPEMLPRVFDLFTQVDR 593

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFPLYDTSHPHDC 819
           +      G G+GL L ++++    G     S    +GT   I  PL  T+   + 
Sbjct: 594 TLGRAQGGLGIGLALVRSLLKLQGGSVEAESAGLGRGTTFTIRLPLAATAGTQEA 648



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 47/303 (15%), Positives = 91/303 (30%), Gaps = 24/303 (7%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYAN---PSFLLLTKYKSVDDIEIAG 364
             ++      E L    +D  P     +   G +   N     F      +    +E A 
Sbjct: 3   TPVAGAERTAEELVRGILDSLPQHIALLDRDGVILAVNEPWRRFARQGGARPEAVLEGAN 62

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRS--DRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
            L+    A +  D  A + +          C A +         RE    M         
Sbjct: 63  YLAACRAAAETGDATAREALAGLTKLFSGACDAFTFEYPCATPERELWFEMHASRAAFGV 122

Query: 423 QFPENMPQNGIEP--EDVDTRINKRKMEIEVMQLCSILEATSDGI-AIINREGIILSTNR 479
                   +       +   R ++R+      +L +IL+    G+   ++  G  +  NR
Sbjct: 123 SKFVVSHADVTTRKNAEEALRESERRERRHAAELEAILDTVPIGVSIALDPRGDHMRGNR 182

Query: 480 AVSKLFGYPVEDILRKP------FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
           A  +L G      L           VF +    SV    L   L+ +L   + +I     
Sbjct: 183 ACEELLGTTPGAELSMTAPDAPALRVFRQGRKLSVDELPLQRALAGELVSDILEIVR--- 239

Query: 534 KEEKLLSLRIIIKKLP----FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD-- 587
            + + +++      L      ++       DI+  K+ +  L  +++          D  
Sbjct: 240 PDGRTVTVYAKAAPLHYENGETNGAVGAFLDITSLKRAEEALRESEERHRTLIEALGDGV 299

Query: 588 FLA 590
           F+A
Sbjct: 300 FVA 302



 Score = 68.5 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 33/409 (8%), Positives = 92/409 (22%), Gaps = 52/409 (12%)

Query: 89  IDAHGYLKEIS---EELPKTIGNYAFKMI-GMRLCDVSDILHIDPNNHIGDLLKR-QNTW 143
           +D  G +  ++       +  G     ++ G              +    + L      +
Sbjct: 30  LDRDGVILAVNEPWRRFARQGGARPEAVLEGANYLAACRAAAETGDATAREALAGLTKLF 89

Query: 144 YG----KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVH-VNRVDNDP----- 193
            G     T  +P       +  ++ A      +R   G   F + H       +      
Sbjct: 90  SGACDAFTFEYPCATPERELWFEMHA------SRAAFGVSKFVVSHADVTTRKNAEEALR 143

Query: 194 -------------RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV 240
                         A+   +    S   + +  H    +   ++                
Sbjct: 144 ESERRERRHAAELEAILDTVPIGVSIALDPRGDHMRGNRACEELLGTTPGAELSMTAPDA 203

Query: 241 SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL----QNNS 296
            +L  +   +   +         + E  + +  +    +    T       L       +
Sbjct: 204 PALRVFRQGRKLSVDELPLQRALAGE-LVSDILEIVRPDGRTVTVYAKAAPLHYENGETN 262

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKS 356
                +L   +         E E      ++      FV       +AN +   +  Y  
Sbjct: 263 GAVGAFLDITSLKRAEEALRESEERHRTLIEALGDGVFVAQDYRFVFANAALPAMLGYTP 322

Query: 357 VDDIEIAGGLSTLLDAPKLSD--NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
            +            D     +      +       D      +     +  +    + M 
Sbjct: 323 AE------FWDMPFDKVIAPECLPLWNERFAQRIGDGPEPPGNYEARAVPKSGGPPIDME 376

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKM---EIEVMQLCSILEA 460
                   +        G+  +  + +  ++ +   +    +  + L  
Sbjct: 377 LRARRIQYRGRPA--VLGVLRDVTERKKTEQALIAADRRKDEFLATLAH 423



 Score = 43.1 bits (100), Expect = 0.21,   Method: Composition-based stats.
 Identities = 24/260 (9%), Positives = 57/260 (21%), Gaps = 18/260 (6%)

Query: 94  YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTW---YGKTTLW 150
                +  LP  +G    +   M    V     +   N                 +    
Sbjct: 306 RFVFANAALPAMLGYTPAEFWDMPFDKVIAPECLPLWNERFAQRIGDGPEPPGNYEARAV 365

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK-----FS 205
           P  G    + ++L A  I  R R        G++                D++      +
Sbjct: 366 PKSGGP-PIDMELRARRIQYRGRPAV----LGVLRDVTERKKTEQALIAADRRKDEFLAT 420

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
             HE++   + +    + +       P       +  + +        L  E   +    
Sbjct: 421 LAHELRNPLAPIHDAAHVLRRMSLTGPDGENSRALVEIIDRQVGHLIRLVDELLEVSRIT 480

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
              +    +   +        +    + +    +           L A       +    
Sbjct: 481 RGKIELMIERIDLAAVIRQAVETSRPVIDRGGHALRVELPDAPLPLDADPVRMTQVFTNL 540

Query: 326 VDKC-----PIPFFVYSHGN 340
           ++       P    V     
Sbjct: 541 LNNAAKYTEPGGEIVVRADR 560


>gi|323493472|ref|ZP_08098594.1| CheY-like receiver protein [Vibrio brasiliensis LMG 20546]
 gi|323312295|gb|EGA65437.1| CheY-like receiver protein [Vibrio brasiliensis LMG 20546]
          Length = 1052

 Score =  360 bits (925), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 100/378 (26%), Positives = 177/378 (46%), Gaps = 15/378 (3%)

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
           +  +  R ++       +I+E     +AII+ +  I+  N    + +GY  EDI      
Sbjct: 152 EIELRTRDLQASEALSRTIIEGAPSSVAIIDNKQRIILWNNTAEQTYGYRFEDIEGSNLC 211

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLE---KITLGSTKEEKLLSLR--IIIKKLPFSSC 553
             L    P  +   L+  L  + +  +          T   +++ +   I I        
Sbjct: 212 ELLRIELPEELKDILSGELRFEDQSKVSGGFFEVETYTSTGRMIPIDLGITIFLFDDQCR 271

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
            ++ + D++  K  +++L+ A+  AE+    KS FLA +SHEIRTP+ AIIG S +    
Sbjct: 272 AAMFLRDVTSRKAVEDELNQARSKAEEAVEVKSMFLANMSHEIRTPMNAIIGMSHLALKT 331

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
              P    +  +Y + I  S +L+L I+ND+LD SKIE+GK+++      LD+ +     
Sbjct: 332 ELTP----KQHDYISKIHNSASLLLGIINDILDFSKIEAGKLSIETIEFHLDDVLHNVSM 387

Query: 674 LVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
           +    A EK + +      ++P++   D   + QI +N+++NA+ FT  G +I +  T T
Sbjct: 388 VTGQKAFEKGLELIFQIDRDVPKVLYGDPLRLGQIIINLVNNAVKFTEQG-EITVHVTRT 446

Query: 733 SNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
            +     E+   V+DTG+GM+  + +K    F Q   S   R  GTGLGL + + +V+  
Sbjct: 447 PHSDQKVELKFSVQDTGIGMSPEQSDKLFSAFTQADGSTTRRYGGTGLGLSICRRLVELM 506

Query: 789 MGKFYIFSTPAKGTLIEI 806
            G   + S   +G+    
Sbjct: 507 GGSIQVESILGQGSEFTF 524


>gi|309790216|ref|ZP_07684788.1| sensory box histidine kinase/response regulator [Oscillochloris
           trichoides DG6]
 gi|308227801|gb|EFO81457.1| sensory box histidine kinase/response regulator [Oscillochloris
           trichoides DG6]
          Length = 906

 Score =  360 bits (925), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 117/648 (18%), Positives = 219/648 (33%), Gaps = 49/648 (7%)

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP---HLRMKNKVSSL 243
           +    +            + + +       +   +  I    +         + + V   
Sbjct: 4   STSAANQPQGSSHDASVLTRIAQHSSNAMILTDNQGRIEWVNTGFTRLTGYVLADVVGHK 63

Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTIN--LNQYTKKQYFGTLQNNSKESFE 301
                      K     +  +        E     N     Y        + +  ++   
Sbjct: 64  PGDLLQGPGTDKATVERMSLAIRQGQGFSEIVLNYNKIGLPYWISLQVSPIFDAQRQLSH 123

Query: 302 YLSHRNHPSLSA----YFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKS 356
           +L      S        F + E          P+  FV    G         L L   K 
Sbjct: 124 FLGVVTPISEQRYLAHLFWQNETYLRMVFQTMPVILFVLDQEGTFILGEGKGLELLGLKP 183

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
                  G  +        +D   I   +         A   +     +           
Sbjct: 184 -------GMFAGQSVFSLYADQPQIIQSVRRALAGEDFAILNQYKDFSFE--------TR 228

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476
                +   +     G+  +           +    +L +++     G+ + + +  +  
Sbjct: 229 FHPMYDVQGQVTGVIGVAFDISPRLQATAASQNANSRLSTLIANLQAGVLVEDDDCRLTL 288

Query: 477 TNRAVSKLFGY--PVEDILRKPFTVFLEQ-----NTPSVMNHYLTEILSLDLRQTLEKIT 529
            N+    +FG   P + ++                       +  +IL      T     
Sbjct: 289 VNQTFCTIFGLSMPPDALIGMDCYDVARMIAPSLEHSESFFTHFQQILEQRQPVTG---Y 345

Query: 530 LGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
           +    + + L    +          +     D+SE  +   +L  AK+ AE  +  KS F
Sbjct: 346 MVRMADGRSLECDFVPVFEDDGYHGHLWLYRDVSERVRGTAELVRAKEAAEAATMAKSSF 405

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
           LA +SHEIRTP+ A+IG + ++ +            +YA  I  SG+++L ++N++LD S
Sbjct: 406 LATMSHEIRTPMNAVIGMTTLMLDTDLTR----EQRQYAETIRTSGDMLLALINNILDFS 461

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQI 707
           KIESG M L  +P SL   + E   L+   A EK I++    +  +P  I  D   V+QI
Sbjct: 462 KIESGHMELEQQPFSLHACIEEVNELLGPKAAEKGIVLTGMVSGQVPAMISGDSTRVRQI 521

Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEE-------VILRVRDTGVGMTNYELEKAMKPF 760
            +N++SNAI FT  G ++ +  +   +E        + + V DTG+G+    +++  +PF
Sbjct: 522 LVNLISNAIKFTNVG-EVTVRASARPDEALSGEHLIITITVADTGIGIPEDRMDRLFRPF 580

Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            QI  S   R  GTGLGL +++ + +   G   + S    G+   + F
Sbjct: 581 SQIDASTTRRFGGTGLGLAISRRLSELMGGSITVQSKVGVGSSFRVTF 628



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 28/370 (7%), Positives = 90/370 (24%), Gaps = 17/370 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTWYGK 146
            D  G ++ ++    +  G     ++G +  D+      D      +   +++   +   
Sbjct: 35  TDNQGRIEWVNTGFTRLTGYVLADVVGHKPGDLLQGPGTDKATVERMSLAIRQGQGFSEI 94

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
              +   G   ++ + ++  PI+   R+ S F G  +V           L  + +     
Sbjct: 95  VLNYNKIGLPYWISLQVS--PIFDAQRQLSHFLG--VVTPISEQRYLAHLFWQNETYLRM 150

Query: 207 LHEIKKGHSSVEKEKYDIF--SQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
           + +       V  ++        +            +  + +  + D     +      +
Sbjct: 151 VFQTMPVILFVLDQEGTFILGEGKGLELLGLKPGMFAGQSVFSLYADQPQIIQSVRRALA 210

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
            E      +        +      +      +               +A      +    
Sbjct: 211 GEDFAILNQYKDFSFETR--FHPMYDVQGQVTGVIGVAFDISPRLQATAASQNANSRLST 268

Query: 325 TVDKCPIPFFVYSHG-NLFYANPSFLLLTKYK-SVDDIEIAGGLSTLLDAPKLSDNNAIK 382
            +        V      L   N +F  +       D +                +++   
Sbjct: 269 LIANLQAGVLVEDDDCRLTLVNQTFCTIFGLSMPPDALIGMDCYDVARMIAPSLEHSESF 328

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
                +        +  +  ++     SL   F+P  + +          +  +  +   
Sbjct: 329 FTHFQQILEQRQPVTGYM--VRMADGRSLECDFVPVFEDDG---YHGHLWLYRDVSERVR 383

Query: 443 NKRKMEIEVM 452
              ++     
Sbjct: 384 GTAELVRAKE 393


>gi|77543221|gb|ABA87031.1| putative histidine kinase [Vibrio cholerae]
          Length = 1268

 Score =  360 bits (925), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 124/676 (18%), Positives = 236/676 (34%), Gaps = 46/676 (6%)

Query: 164 AALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYD 223
           A        REF G  GFG++ +    N   A   R+  +    +   +  +  +   + 
Sbjct: 96  AYTQARDYKREFPGAHGFGLI-IKVEPNQTAAFLDRMAAERPSYNFQIRQLTPHQDSLFV 154

Query: 224 IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY 283
           I   +    +                            LT+  + +   E      L   
Sbjct: 155 ITYIEPEQNNREAVGVDIGSEAMRRKAALDAAFNNDVRLTAPITLVQANERAQQGFLILM 214

Query: 284 TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY 343
              +     Q++ +           P L     +                F+        
Sbjct: 215 PVYKTTTVPQDSRQRLEHLFGWSYAPILINEVLKSVAGLEN-------DVFLQISDITEQ 267

Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403
               F       + D         ++               +     R+  +    +  +
Sbjct: 268 TPIEFFSQEVKDTYDAALQHKLNLSVFGRQWQLSLTPTNRFINELQLRSGTSLFFEVMAV 327

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ---------- 453
                  + +  +   + +Q   +  +     E    +    ++E +V            
Sbjct: 328 STILAFGVYLLQLMLMRRSQLIRHKQELASIAEQTLLK-ANAELEQQVALRTAEISRVNI 386

Query: 454 -LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH- 511
              SIL +    I   + EGII + N A  KL GY  E++L +              +  
Sbjct: 387 LQRSILSSAGYAIIATDEEGIITAFNPAAEKLLGYRAEEVLFQQTPSIFHLPAEVEHHAA 446

Query: 512 -------------YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----Y 554
                        + T +    L QT        TK  + + +++ +  L         +
Sbjct: 447 KLTTELGSNIAVGFETLVAKARLGQTDNARWTYLTKTGEQVQVKLNVSALKDEQGQLAGF 506

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                D+++  + + +L+ AK+ AE  +  KS+FLA +SHEIRTP+  ++G  +++ N  
Sbjct: 507 LGIAFDLTKQLKYEVELAQAKEQAESANKAKSEFLANMSHEIRTPMNGVLGLLQLVANST 566

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                + R  +Y      +   +L ++ND+LD SKIE+GK+ L   P SL + + +   +
Sbjct: 567 L----DQRQADYIEKAYSAAKSLLTLLNDILDFSKIEAGKLELDPHPFSLTDLLQDIGLV 622

Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHT 732
               A +K + +      ++P  +L D   +KQ+ +N++ NAI FT  G   I I +   
Sbjct: 623 FSSSAEQKGLEVLYDVTADVPEHLLGDSFRIKQVLINLVGNAIKFTDKGEILISIRSQSL 682

Query: 733 SNEEV--ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
              E+     ++DTG+G+T  +       F Q  +S   R  GTGLGL ++K +V+   G
Sbjct: 683 PEGEINLSFSIKDTGIGITLEQQNALFSGFQQADSSISRRYGGTGLGLAISKRLVNLMGG 742

Query: 791 KFYIFSTPAKGTLIEI 806
           +  + S    G+    
Sbjct: 743 EIGVESEFGCGSTFSF 758



 Score = 44.2 bits (103), Expect = 0.089,   Method: Composition-based stats.
 Identities = 16/152 (10%), Positives = 39/152 (25%), Gaps = 17/152 (11%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMI--------------GMRLCDVSDILHIDPNNHIG 134
            D  G +   +    K +G  A +++                    ++  L  +      
Sbjct: 402 TDEEGIITAFNPAAEKLLGYRAEEVLFQQTPSIFHLPAEVEHHAAKLTTELGSNIAVGFE 461

Query: 135 DLLKRQNTWYGKTTLW-PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193
            L+ +          W  +  T   V + L    +     + +GF G  I          
Sbjct: 462 TLVAKARLGQTDNARWTYLTKTGEQVQVKLNVSALKDEQGQLAGFLG--IAFDLTKQLKY 519

Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF 225
                +  ++    ++ K    +    +    
Sbjct: 520 EVELAQAKEQAESANKAKSEFLANMSHEIRTP 551


>gi|254423157|ref|ZP_05036875.1| PAS fold family [Synechococcus sp. PCC 7335]
 gi|196190646|gb|EDX85610.1| PAS fold family [Synechococcus sp. PCC 7335]
          Length = 1125

 Score =  360 bits (925), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 125/635 (19%), Positives = 232/635 (36%), Gaps = 30/635 (4%)

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP---PPHLRMKNKVS 241
            +  +    RA  +   +    L   + G   ++ +   + +              +   
Sbjct: 363 QIASLIRQKRAAKEARRQLKLALATGRIGTWEIDLKTQTLTASNQHKYNYGLPAEADLTY 422

Query: 242 SLTEYYAHKDD-VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF 300
            + +   H  D    T  Y    S+     E+      + + +        + + + E+ 
Sbjct: 423 EIVQSRIHPSDCDRVTAAYQATISQGIGFDEEYRLVWADGSIHWLISRAERVCDETGEAD 482

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIP-----FFVYSHGNLFYANPSFLLLTKYK 355
             +      +     ++   +  +              F    G L YAN   L L  Y+
Sbjct: 483 RLIGVSIDVTERKQAEQAAKVGGQRFRDVAESNLFGVVFGTLSGELSYANDYVLDLLGYR 542

Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
           + +          +  A     + A   +   R   TC          +    + + +  
Sbjct: 543 AHELASHQVRWDQITPAEFALADQA--AINQLRETGTCEPYE---KAFRHKDGSKVPVLV 597

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
                     ++        +    +        E  +       + D  A+ N EG   
Sbjct: 598 AATLLQQVADQSQEVMAFILDLTRLKQVT----EERDRF---FRLSPDMHAVGNFEGYFT 650

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
             N A  K+ GY   ++  +P+  F+  +   +       + + +    +E       K+
Sbjct: 651 QVNPAWVKVLGYTSSELTAQPYLFFIHPDDREMTAAIAANLTASEDP--IEFENRYRCKD 708

Query: 536 EKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
                L   +  L     +     DI+  KQ   +   A++ AE+ +  K +FLA VSHE
Sbjct: 709 GSYRWLLWKVTALIAEGRFYAVARDITTRKQVALEREAAREAAERANRIKDEFLAVVSHE 768

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           +R+PL  I+G+S+++K    G L   R       I+R+  L + ++ DLLDIS+I   K+
Sbjct: 769 LRSPLNPILGWSQLLKR---GTLDEKRTKLALASIERNAQLQVQLIGDLLDISRILRNKL 825

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715
            L   PV L+  +  A+  V+    EK I I T+       ++ D   ++Q+  N+LSNA
Sbjct: 826 ILDKAPVDLESIIFAALETVKQATAEKSIHIETTITP--CTVVGDAVRLQQVVWNLLSNA 883

Query: 716 IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           + FTP  G I ++ T     EV++ V DTG G+    L    + F Q   S   +  G G
Sbjct: 884 VKFTPRDGSITVTVT-ADVSEVVIEVSDTGKGIAADFLPFVFEHFRQENYSTTRKFGGLG 942

Query: 776 LGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFP 809
           LGL + + +VD + G   + S    +GT   +  P
Sbjct: 943 LGLAIVRQIVDLHDGTVAVRSPGENQGTTFSVCLP 977



 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/152 (11%), Positives = 40/152 (26%), Gaps = 16/152 (10%)

Query: 74  FVFDPIPRTV-RFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH 132
           F   P    V  F       GY  +++    K +G  + ++              +    
Sbjct: 633 FRLSPDMHAVGNF------EGYFTQVNPAWVKVLGYTSSELTAQPYLFFIHPDDREMTAA 686

Query: 133 IGDLL-KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN 191
           I   L   ++    +      +G+  ++   + AL        F     + +        
Sbjct: 687 IAANLTASEDPIEFENRYRCKDGSYRWLLWKVTAL---IAEGRF-----YAVARDITTRK 738

Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYD 223
                 +   +     + IK    +V   +  
Sbjct: 739 QVALEREAAREAAERANRIKDEFLAVVSHELR 770



 Score = 47.3 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 25/224 (11%), Positives = 62/224 (27%), Gaps = 20/224 (8%)

Query: 93  GYLKEISEELPKTIGNYAFKMIGM--RLCDVS-DILHIDPNNHIGDLLKRQNTWYGKTTL 149
           G L   ++ +   +G  A ++     R   ++     +     I  L +       +   
Sbjct: 526 GELSYANDYVLDLLGYRAHELASHQVRWDQITPAEFALADQAAINQLRETGTCEPYEKAF 585

Query: 150 WPIEGTNLYVPIDLAALPIY---SRNREFSGFRGFGIVHVNRVDNDPRALGK--RLDKKF 204
              +G+   VP+ +AA  +     +++E   F    I+ + R+        +  RL    
Sbjct: 586 RHKDGS--KVPVLVAATLLQQVADQSQEVMAF----ILDLTRLKQVTEERDRFFRLSPDM 639

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
             +   +   + V      +    S     +          +    D  +       LT+
Sbjct: 640 HAVGNFEGYFTQVNPAWVKVLGYTSSELTAQ------PYLFFIHPDDREMTAAIAANLTA 693

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
            E  +  +  +   + +          L    +           
Sbjct: 694 SEDPIEFENRYRCKDGSYRWLLWKVTALIAEGRFYAVARDITTR 737


>gi|170727652|ref|YP_001761678.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
 gi|169812999|gb|ACA87583.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
          Length = 1582

 Score =  360 bits (925), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 123/664 (18%), Positives = 232/664 (34%), Gaps = 44/664 (6%)

Query: 185  HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244
             VN    + +    RL   + H                   +        R +       
Sbjct: 419  RVNTRTLELQERETRLWDLYEHSPVAYASLDIKGNFIKHNLAFAQLTGREREEFSHLKFN 478

Query: 245  EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN---NSKESFE 301
            +   H ++  +     +L+ E +S    E F      ++        L            
Sbjct: 479  DVIKHSEEFTQELLDHVLSGEVTSDIRVELFRDDKQKKFASMTVISKLDEQGKLEDIRLS 538

Query: 302  YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS------HGNLFYANPSFLLLTKYK 355
             L       +       +      V       F Y          + Y +P    +T Y+
Sbjct: 539  LLDVTQREMVRKELKYNQAQFSSMVSNIQGAVFRYRLSEDWRTSEMLYTSPKMAQITGYE 598

Query: 356  SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
                +  A  ++          +     +   R D + + A  R+            + F
Sbjct: 599  IEFFLGDAPQVNLFDLIHPADVDEFNLQMESSRLDGSSLRADVRIINAS---NIERYVQF 655

Query: 416  IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR---EG 472
                  N        +    +  + + ++ K+     +L     +   G+   +    E 
Sbjct: 656  RALFSVNASGSAEYLDVSIFDITEQKSSELKLHESEERLDVASSSAQLGMW--DSFPLES 713

Query: 473  IILSTNRAVSKLFGYPVEDIL------------RKPFTVFLEQNTPSVMNHYLTEILSLD 520
             +L  N     + GY ++D+              + +   +  +   +    +   +   
Sbjct: 714  KVL-INHVCVTMLGYKMDDLCISNDKWSELKSGNRTWLGLIHPDDRELYTELIEAHI-TG 771

Query: 521  LRQTLEKITLGSTKEEKLLS-LRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAK 575
              +   +         +    L +       +       S    +I   KQ + +L  +K
Sbjct: 772  NEEIYRQELRLLNHSGQYEWMLSVGKVFERDNQGRAIRISGINVNIDAAKQLEKELELSK 831

Query: 576  KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
            + A+  +  KSDFLA +SHEIRTP+ AIIG S +          + +   Y + ++RS  
Sbjct: 832  QKADSANRAKSDFLANMSHEIRTPMNAIIGMSHLALETDL----DRKQRNYIDKVNRSAE 887

Query: 636  LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695
             +L I+ND+LD SKIE+GK+++     SL++ + +   LV   A +K I +  +  +++P
Sbjct: 888  SLLGIINDILDFSKIEAGKLDIEKIDFSLEDVLEDVSDLVGFKAKDKGIELLFNTESSLP 947

Query: 696  -RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTH--TSNEEVILRVRDTGVGMTNY 751
                 D   + Q+  N+ +NAI FT  G  QI +       +N E+   + DTG+GM+  
Sbjct: 948  FYFNGDPLRLSQVLTNLSNNAIKFTEQGEVQIKVYAHSINETNIELAFEISDTGIGMSKE 1007

Query: 752  ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
            +  K  K F Q  +S   +  GTGLGL +++ +V+   G     S    G+  + I PL 
Sbjct: 1008 QQLKLFKAFSQADSSTTRKHGGTGLGLVISQNLVELMGGVISFESEEGVGSCFKFILPLT 1067

Query: 812  DTSH 815
              S 
Sbjct: 1068 PASA 1071



 Score = 47.7 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 55/505 (10%), Positives = 129/505 (25%), Gaps = 57/505 (11%)

Query: 45  CHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPR-TVRFTWNIDAHGYLKEISEELP 103
            H+  +  N   ++    + T  L    T ++D      V +  ++D  G   + +    
Sbjct: 405 IHEQLKAVNEKLED-RVNTRTLELQERETRLWDLYEHSPVAYA-SLDIKGNFIKHNLAFA 462

Query: 104 KTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDL 163
           +  G    +   ++  DV           +  +L  + T          +         +
Sbjct: 463 QLTGREREEFSHLKFNDVIKHSEEFTQELLDHVLSGEVT-SDIRVELFRD-DKQKKFASM 520

Query: 164 AALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYD 223
             +       +    R    +         R   K    +FS +    +G     +   D
Sbjct: 521 TVISKLDEQGKLEDIR--LSLLDVTQREMVRKELKYNQAQFSSMVSNIQGAVFRYRLSED 578

Query: 224 IFSQQ---SPPPHLRMKNKVSSLTEYYAHK--------DDVLKTEKYPLLTSEESSLPEQ 272
             + +   + P   ++           A +           +      + +S       +
Sbjct: 579 WRTSEMLYTSPKMAQITGYEIEFFLGDAPQVNLFDLIHPADVDEFNLQMESSRLDGSSLR 638

Query: 273 EDFHTINLNQYTKKQYFGTLQNNSKESFEY------LSHRNHPSLSAYFDEGENLTPETV 326
            D   IN +   +   F  L + +                   S      E E       
Sbjct: 639 ADVRIINASNIERYVQFRALFSVNASGSAEYLDVSIFDITEQKSSELKLHESEERLDVAS 698

Query: 327 DKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVD-------DIEIAGGLSTLLDAPKLSDN 378
               +  +  +   +    N   + +  YK  D         E+  G  T L      D 
Sbjct: 699 SSAQLGMWDSFPLESKVLINHVCVTMLGYKMDDLCISNDKWSELKSGNRTWLGLIHPDDR 758

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
                ++              L  +  + +    ++     + +     +  +GI     
Sbjct: 759 ELYTELIEAHITGNEEIYRQELRLLNHSGQYEWMLSVGKVFERDNQGRAIRISGINVNID 818

Query: 439 DTRINKRKMEIEVMQLCS-------ILEATS-------DGIAI---------INREGI-- 473
             +  ++++E+   +  S        L   S       + I           ++R+    
Sbjct: 819 AAKQLEKELELSKQKADSANRAKSDFLANMSHEIRTPMNAIIGMSHLALETDLDRKQRNY 878

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFT 498
           I   NR+   L G   + +      
Sbjct: 879 IDKVNRSAESLLGIINDILDFSKIE 903


>gi|23016597|ref|ZP_00056351.1| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 734

 Score =  360 bits (925), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 121/404 (29%), Positives = 205/404 (50%), Gaps = 10/404 (2%)

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTR-----INKRKMEIEVMQLCSILEATSDGIAII 468
                + + Q    + + G   +  DT        + ++     +  +  +  + G++  
Sbjct: 322 RVRAGDMSAQAGGGIGEVGEMGDTFDTMVGALNEREARLADSEDRFRATFDQAAVGMSHS 381

Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528
             +   +  NR  + + GY  E+++ +            +    +  ++  D++      
Sbjct: 382 TPDRRFIRMNRRFASMLGYEPEELIGRSTLSITHPEDRILATDEIAAMIRGDIQS-FATE 440

Query: 529 TLGSTKEEKLLSLRIIIKKLPFSSCY---SLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
                K+  +  + + +  L              DI   KQ + +L  AK+ AE  S  K
Sbjct: 441 KRYIRKDGSIAWVNLTLSALRRDGRVEYLIGVTEDIERRKQAEVQLLAAKEQAESASRAK 500

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
           SDFLA +SHE+RTPL AIIGF+E + +Q  GP+   RY EYA  I  SG  +L I+ D+L
Sbjct: 501 SDFLAGMSHELRTPLNAIIGFAETMYSQVLGPIP-ERYREYAGDIAASGRHLLGIITDIL 559

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
           D++KIE+G+M L   PV +   V  AI L++      R+ + +    ++PRILAD R ++
Sbjct: 560 DLAKIEAGRMELDENPVEIAPVVEAAIRLLRDRGTAARLDLHSDIPASLPRILADERRIR 619

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           Q+ +N+L+NA+ FTP GG + +S   T++  + L V DTG+GMT+ E+ +A++PF Q+  
Sbjct: 620 QVVINLLANAVKFTPHGGSVSVSANLTTDGGLALHVSDTGIGMTDEEMSQAVEPFVQVDA 679

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
               R EGTGLGLP+  A+++ + G   I S P +GT + + FP
Sbjct: 680 RIARRHEGTGLGLPMVAAIMEMHRGTIAIASRPNQGTTVTVTFP 723



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 23/248 (9%), Positives = 61/248 (24%), Gaps = 14/248 (5%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH-IDPNNHIGDLLKRQ-NTWYGKTT 148
                  ++      +G    ++IG     ++     I   + I  +++    ++  +  
Sbjct: 383 PDRRFIRMNRRFASMLGYEPEELIGRSTLSITHPEDRILATDEIAAMIRGDIQSFATEKR 442

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +G+  +V + L+AL    R+         G+                  ++     
Sbjct: 443 YIRKDGSIAWVNLTLSAL---RRDGRVEYL--IGVTEDIERRKQAEVQLLAAKEQAESAS 497

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK-DDVLKTEKYPLLTSEES 267
             K    +    +              M ++V         +    +      LL     
Sbjct: 498 RAKSDFLAGMSHELRTPLNAIIGFAETMYSQVLGPIPERYREYAGDIAASGRHLLGIITD 557

Query: 268 SL------PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
            L        + +     +      +    L  +   +     H + P+        E  
Sbjct: 558 ILDLAKIEAGRMELDENPVEIAPVVEAAIRLLRDRGTAARLDLHSDIPASLPRILADERR 617

Query: 322 TPETVDKC 329
             + V   
Sbjct: 618 IRQVVINL 625


>gi|259156506|gb|ACV96450.1| multi-sensor hybrid histidine kinase [Vibrio cholerae Mex1]
          Length = 1268

 Score =  360 bits (925), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 124/676 (18%), Positives = 236/676 (34%), Gaps = 46/676 (6%)

Query: 164 AALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYD 223
           A        REF G  GFG++ +    N   A   R+  +    +   +  +  +   + 
Sbjct: 96  AYTQARDYKREFPGAHGFGLI-IKVEPNQTAAFLDRMAAERPSYNFQIRQLTPHQDSLFV 154

Query: 224 IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY 283
           I   +    +                            LT+  + +   E      L   
Sbjct: 155 ITYIEPEQNNREAVGVDIGSEAMRRKAALDAAFNNDVRLTAPITLVQANERAQQGFLILM 214

Query: 284 TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY 343
              +     Q++ +           P L     +                F+        
Sbjct: 215 PVYKTTTVPQDSRQRLEHLFGWSYAPILINEVLKSVAGLEN-------DVFLQISDITEQ 267

Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403
               F       + D         ++               +     R+  +    +  +
Sbjct: 268 TPIEFFSQEVKDTYDAALQHKLNLSVFGRQWQLSLTPTNRFINELQLRSGTSLFFEVMAV 327

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ---------- 453
                  + +  +   + +Q   +  +     E    +    ++E +V            
Sbjct: 328 STILAFGVYLLQLMLMRRSQLIRHKQELASIAEQTLLK-ANAELEQQVALRTAEISRVNI 386

Query: 454 -LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH- 511
              SIL +    I   + EGII + N A  KL GY  E++L +              +  
Sbjct: 387 LQRSILSSAGYAIIATDEEGIITAFNPAAEKLLGYRAEEVLFQQTPSIFHLPAEVEHHAA 446

Query: 512 -------------YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----Y 554
                        + T +    L QT        TK  + + +++ +  L         +
Sbjct: 447 KLTTELGSNIAVGFETLVAKARLGQTDNARWTYLTKTGEQVQVKLNVSALKDEQGQLAGF 506

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                D+++  + + +L+ AK+ AE  +  KS+FLA +SHEIRTP+  ++G  +++ N  
Sbjct: 507 LGIAFDLTKQLKYEVELAQAKEQAESANKAKSEFLANMSHEIRTPMNGVLGLLQLVANST 566

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                + R  +Y      +   +L ++ND+LD SKIE+GK+ L   P SL + + +   +
Sbjct: 567 L----DQRQADYIEKAYSAAKSLLTLLNDILDFSKIEAGKLELDPHPFSLTDLLQDIGLV 622

Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHT 732
               A +K + +      ++P  +L D   +KQ+ +N++ NAI FT  G   I I +   
Sbjct: 623 FSSSAEQKGLEVLYDVTADVPEHLLGDSFRIKQVLINLVGNAIKFTDKGEILISIRSQSL 682

Query: 733 SNEEV--ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
              E+     ++DTG+G+T  +       F Q  +S   R  GTGLGL ++K +V+   G
Sbjct: 683 PEGEINLSFSIKDTGIGITLEQQNALFSGFQQADSSISRRYGGTGLGLAISKRLVNLMGG 742

Query: 791 KFYIFSTPAKGTLIEI 806
           +  + S    G+    
Sbjct: 743 EIGVESEFGCGSTFSF 758



 Score = 44.2 bits (103), Expect = 0.090,   Method: Composition-based stats.
 Identities = 16/152 (10%), Positives = 39/152 (25%), Gaps = 17/152 (11%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMI--------------GMRLCDVSDILHIDPNNHIG 134
            D  G +   +    K +G  A +++                    ++  L  +      
Sbjct: 402 TDEEGIITAFNPAAEKLLGYRAEEVLFQQTPSIFHLPAEVEHHAAKLTTELGSNIAVGFE 461

Query: 135 DLLKRQNTWYGKTTLW-PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193
            L+ +          W  +  T   V + L    +     + +GF G  I          
Sbjct: 462 TLVAKARLGQTDNARWTYLTKTGEQVQVKLNVSALKDEQGQLAGFLG--IAFDLTKQLKY 519

Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF 225
                +  ++    ++ K    +    +    
Sbjct: 520 EVELAQAKEQAESANKAKSEFLANMSHEIRTP 551


>gi|260778490|ref|ZP_05887382.1| sensor histidine kinase [Vibrio coralliilyticus ATCC BAA-450]
 gi|260604654|gb|EEX30949.1| sensor histidine kinase [Vibrio coralliilyticus ATCC BAA-450]
          Length = 812

 Score =  360 bits (925), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 98/381 (25%), Positives = 172/381 (45%), Gaps = 16/381 (4%)

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
           +   + +  E E  +L  +++   D +   + +  +   N A  +L GY + +++ K   
Sbjct: 288 EQSESLKIREAESARLARVVKHMRDAVVFTDLDSKVTWVNGAFERLTGYSLSEMIGKKPG 347

Query: 499 VFLEQNTPSVMNHY-LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SC 553
             L+           + E++            L   KE +   + I +  L  +      
Sbjct: 348 DVLQGVDTDKRTTRKIRELIDRREPGFF--ELLNYNKEGESYWIEIALTPLYSTHGQIEG 405

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
           +     DI++  + +  L      AE  +  KS FLA +SHE+RTP+  I+G  +++KN 
Sbjct: 406 FMAVERDITQRVELEESLKIKAVEAEAANIAKSQFLAAMSHELRTPMNGILGVGDLLKNT 465

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
                 N    EY +    SG  +L+++ND+LD SKIE+GK+ L      L + V+    
Sbjct: 466 TL----NEEQQEYVDTFLGSGKHMLNVLNDILDFSKIEAGKLELEKVEFLLKDVVARLTR 521

Query: 674 LVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
           L +    +K +  +  ++ +  R ++AD   + QI  N+LSNA+ FT  GG I +S    
Sbjct: 522 LYEPLCADKHLEFKCEYSQSCDRALVADETRILQILQNLLSNALKFTSEGG-ITLSLDVV 580

Query: 733 SNE---EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
                 E+ + V DTG+G++  +      PF Q  +    R  GTGLGL + + +V A  
Sbjct: 581 EQSHRIELHIDVSDTGIGISPEKQSAIFDPFSQAESDTTRRFGGTGLGLSITRDLVKAMN 640

Query: 790 GKFYIFSTPAKGTLIEIIFPL 810
           G   + S   KG+   I+ P+
Sbjct: 641 GTVDLSSEVGKGSQFTIVVPV 661



 Score = 70.4 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 47/139 (33%), Gaps = 6/139 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTWYGK 146
            D    +  ++    +  G    +MIG +  DV   +  D      I +L+ R+   + +
Sbjct: 317 TDLDSKVTWVNGAFERLTGYSLSEMIGKKPGDVLQGVDTDKRTTRKIRELIDRREPGFFE 376

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
              +  EG +    I++A  P+YS + +  GF    +        +     K    +   
Sbjct: 377 LLNYNKEGESY--WIEIALTPLYSTHGQIEGFM--AVERDITQRVELEESLKIKAVEAEA 432

Query: 207 LHEIKKGHSSVEKEKYDIF 225
            +  K    +    +    
Sbjct: 433 ANIAKSQFLAAMSHELRTP 451


>gi|291571976|dbj|BAI94248.1| putative PAS/PAC sensor protein [Arthrospira platensis NIES-39]
          Length = 959

 Score =  360 bits (925), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 105/411 (25%), Positives = 178/411 (43%), Gaps = 24/411 (5%)

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
              +    ++ R  +  +     +  SI E  ++GI     +G  +S N A++++ GY  
Sbjct: 536 VGEMFSNTIERRRTEEVLRQTEAKYRSIFENAAEGICQTTPDGRYISANPALARILGYDS 595

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
            + L    T    Q                         +    ++   + +    + + 
Sbjct: 596 PEDLIANLTDVSTQLYVKPTRRAEFVAAIAKSSVISGFESQVYRQDGTTIWISENARAVF 655

Query: 550 FSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
            +    +    T+ DI+E K+    L  AK+ AE  +  KS FLA +SHE+RTPL AIIG
Sbjct: 656 DAIGELVCYEGTVEDITEGKRAAEALERAKEAAETANRAKSTFLANMSHELRTPLNAIIG 715

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
           +SE++  +           +    I  +G  +L ++ND+LDISKIE+G+M+L  E   + 
Sbjct: 716 YSEILLEEAEELGYEDIVPD-LERIYTAGKNLLTLINDILDISKIEAGRMDLFVEAFDVS 774

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725
             +   +   Q   ++    +     +NI  + AD+  V+QI LN+LSNA  FT  G +I
Sbjct: 775 GLLESVMGTAQPLMSKNNNTLTVDCPDNIGIMYADVTKVRQILLNLLSNAAKFTTDG-KI 833

Query: 726 IISTTH--------TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
            I  +          S   V  +V DTG+GM+  + E+  +PF Q   S   R  GTGLG
Sbjct: 834 KIEVSRVSSLPYSQESGSVVEFKVHDTGIGMSAEQQEQLFQPFTQGDASTTRRYGGTGLG 893

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP----------LYDTSHPHD 818
           L ++        G   + ST  +G+  +++ P          +  T  P +
Sbjct: 894 LAISDRFCQMMGGNIQVQSTLGEGSTFKVVIPTRVKVKTSEAIATTQDPEE 944



 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 45/355 (12%), Positives = 111/355 (31%), Gaps = 16/355 (4%)

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ-YFGTLQNNSKESFEYLS-- 304
                 L+   + + T        +E    ++ +     Q      Q  +  S E L   
Sbjct: 4   PLLQQQLQEIGFQMDTPPSDPKAWREFLKKVSSSYRAADQQRDLAAQTLTFSSEEMLEKY 63

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIA 363
            R      A  +   +     +        +    GNL   NP    L  +   +     
Sbjct: 64  ERQRQQSEARLEAERDRLQAVIGSLGAGLCILDAQGNLLSMNPKAEQLLGWSESELAGQD 123

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRS-----DRTCIAASARLHTIQWNRENSLAMTFIPF 418
                 L AP L       P  L +      ++      ++   +       L +++I  
Sbjct: 124 LFK---LIAPHLQQFPQQFPSHLGQKCSPSPEQLLAPPKSKQDYLACRDGQVLPVSYILN 180

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
               +    +    +  +  D +  +++    +  L +  ++T  GI  ++R G +   N
Sbjct: 181 PIV-ENDAWVGTVLVFFDISDRQQAEQEAARSMSMLQATFDSTDAGILALDRYGQVCHFN 239

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSV--MNHYLTEILSLDLRQTLEKITLGSTKEE 536
           +   +++  P   +        L      +     +L  I+ L  +  +    +   K+ 
Sbjct: 240 QKFVQMWEVPESFLNPHQNRSTLAFVMRQLKNPPQFLKTIMQLSAQPYIPTYDVVEFKDG 299

Query: 537 KLLSLRIIIKKLPFS-SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
           ++  +     K+         +  DI+E K+ +  L +  +  +  ++  + F++
Sbjct: 300 RIFEVYSHPSKVGNKLVGRVWSFRDITERKRVEKALQNRVEFEQLITNLSTYFIS 354



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/141 (13%), Positives = 44/141 (31%), Gaps = 7/141 (4%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNTWYG 145
                G     +  L + +G  + + +   L DVS  L++ P         + + +   G
Sbjct: 573 QTTPDGRYISANPALARILGYDSPEDLIANLTDVSTQLYVKPTRRAEFVAAIAKSSVISG 632

Query: 146 -KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            ++ ++  +GT   + I   A  ++    E   + G   V             +R  +  
Sbjct: 633 FESQVYRQDGTT--IWISENARAVFDAIGELVCYEG--TVEDITEGKRAAEALERAKEAA 688

Query: 205 SHLHEIKKGHSSVEKEKYDIF 225
              +  K    +    +    
Sbjct: 689 ETANRAKSTFLANMSHELRTP 709



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/147 (8%), Positives = 34/147 (23%), Gaps = 6/147 (4%)

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365
                     + E       +            G    ANP+   +  Y S +D+     
Sbjct: 545 ERRRTEEVLRQTEAKYRSIFENAAEGICQTTPDGRYISANPALARILGYDSPEDLIAN-- 602

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
           L+ +     +      + V                  +      ++ ++       +   
Sbjct: 603 LTDVSTQLYVKPTRRAEFVAAIAKSSVISGFE---SQVYRQDGTTIWISENARAVFDAIG 659

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVM 452
           E +   G   +  + +     +E    
Sbjct: 660 ELVCYEGTVEDITEGKRAAEALERAKE 686


>gi|118579861|ref|YP_901111.1| multi-sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
 gi|118502571|gb|ABK99053.1| multi-sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
          Length = 785

 Score =  360 bits (924), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 101/416 (24%), Positives = 186/416 (44%), Gaps = 18/416 (4%)

Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK--MEIEVMQLCSILEATSD 463
           +    +A+  +         + +   G     +  ++ + +  M        +I+ + +D
Sbjct: 221 DTTRQVALGNLTARADIGTGDELEHLGRSFNIMTEQLQQTQGDMSAAREYTDNIIRSMND 280

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
            + +++ EGII   N A   L GY   +++       L  +  +         L+  + +
Sbjct: 281 AMIVVSPEGIIDRVNTATLNLLGYDERELIGSNIDKILASDAATGEGAAPVPDLAGLIPR 340

Query: 524 TL--EKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKI 577
               +  T    ++ +L+ +      +  +            DI+E KQ +  L  AK+ 
Sbjct: 341 GFINKVETFYRARDGRLIPVIFSASVMHGAGKSAQGIVCVALDITERKQAEEALRIAKEN 400

Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
           AE  +  KS FLA +SHEIRTP+  ++G  +++ + R     +   +  A+    S + +
Sbjct: 401 AEAANRAKSQFLANMSHEIRTPMNGVLGMLDLLMDSRL----DENQLRLASMAHGSADKL 456

Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-R 696
           L+I+ND+LD SKIE+G+  LH    +L E V E   +  + A +K I +     +++P  
Sbjct: 457 LEIINDILDFSKIEAGRFQLHMADFALRETVREVADMFWVKAQDKNIRLICQIDDSVPNT 516

Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH----TSNEEVILRVRDTGVGMTNYE 752
           +  D   ++Q+ +N++ NA+ FT   GQI +  +       N ++   VRDTG G+    
Sbjct: 517 VRGDGVRLRQVLINLVGNAVKFT-ENGQIFLGVSLMETTAENTQLRFEVRDTGTGIPLDA 575

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
                  F Q  NS   R EGTGLGL +++ +V+A  G   + S P  G+L     
Sbjct: 576 QPYIFDAFSQADNSMARRHEGTGLGLAISRELVEAMGGTIGVRSEPGTGSLFWFTL 631



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/246 (9%), Positives = 66/246 (26%), Gaps = 17/246 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRL-----CDVSDILHIDPNNHIGDLLKRQNTW 143
           +   G +  ++      +G    ++IG  +      D +      P   +  L+ R    
Sbjct: 285 VSPEGIIDRVNTATLNLLGYDERELIGSNIDKILASDAATGEGAAPVPDLAGLIPRGFIN 344

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +T     +G    +P+  +A  ++   +   G     +              +   + 
Sbjct: 345 KVETFYRARDGRL--IPVIFSASVMHGAGKSAQGI--VCVALDITERKQAEEALRIAKEN 400

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
               +  K    +    +          P   +   +  L +    ++ +          
Sbjct: 401 AEAANRAKSQFLANMSHEIR-------TPMNGVLGMLDLLMDSRLDENQLRLASMAHGSA 453

Query: 264 S-EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
                 + +  DF  I   ++        L+   +E  +    +          + ++  
Sbjct: 454 DKLLEIINDILDFSKIEAGRFQLHMADFALRETVREVADMFWVKAQDKNIRLICQIDDSV 513

Query: 323 PETVDK 328
           P TV  
Sbjct: 514 PNTVRG 519


>gi|220908096|ref|YP_002483407.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219864707|gb|ACL45046.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 1099

 Score =  360 bits (924), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 106/526 (20%), Positives = 219/526 (41%), Gaps = 34/526 (6%)

Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDI 360
            +  R+         + E       ++  I  F     G     N  F   + Y + + +
Sbjct: 352 AIEARDRQRSELALRQSEERFRAIFEQAAIGIFQTDATGKYIQVNQRFCQFSGYSADELL 411

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRS--DRTCIAASARLHTIQWNRE-NSLAMTFIP 417
                   L         +  + + L  +       + S      Q + +     +T   
Sbjct: 412 -------QLRMQDITHPVDLRRCLELRNALFSGELQSFSLEKRLRQKSGQWRWANVTISA 464

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG----- 472
            +  + FP      G+  +  + +  + + +       ++++  ++GI +    G     
Sbjct: 465 VQHPDGFPC---TIGVIEDISERKQAEAQRQSADSFRRALIDRAAEGICMC--HGIEEFP 519

Query: 473 --IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT--PSVMNHYLTEILSLDLRQTLEKI 528
                  N+ +  L GY +E+I R  +   L  ++         ++ +   +     E  
Sbjct: 520 YVRFTVWNQRMVSLTGYTMEEINRLGWYQTLYPDSEIREAAIERMSRMRQGEDLMAEEWT 579

Query: 529 TLGSTKEEKLLSLRIIIKK-LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
              +  E++++ +   +   +         M DI++ K  +  +  AK+ AE  +  KS 
Sbjct: 580 ITRADGEQRVVCISTSLIPGVEGDYHALAVMQDITQRKHTELAMQQAKEAAEAANQAKSA 639

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           FLA +SHE+RTPL AI+GF+++++             E  + I+RSG  +L ++ND+L++
Sbjct: 640 FLAHMSHELRTPLNAILGFAQLMERDTLLTTA---QKESLSIINRSGEHLLGLINDVLEM 696

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQ 706
           SKIE+G++ LH     L   +     + ++ A  K +++  + + ++P+ I++D   ++Q
Sbjct: 697 SKIEAGRIVLHKAQFDLHRLLQTLQEMFRVRATAKGLVLTMNLSPSLPQLIISDEGKLRQ 756

Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSNEE--VILRVRDTGVGMTNYELEKAMKPFGQIP 764
           + +N+LSNA+ FT  G  I ++  +  + +  +  +V DTG G+   E     +PF Q  
Sbjct: 757 VLINLLSNAVKFTDVG-HITLTANYADDPDPRLWFQVEDTGRGIAAAEQHHLFEPFVQTT 815

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
                  EGTGLGL ++   V    G+  + S   +G+      P+
Sbjct: 816 TGAN-AQEGTGLGLTISHQFVQLLGGELRVESEVNRGSTFSFDLPV 860



 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 45/375 (12%), Positives = 97/375 (25%), Gaps = 30/375 (8%)

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
            + +IK       +E             L  K    +L E  A      +  +       
Sbjct: 140 AVLDIKPMQPDPGRELILKIFAARAGAELERKYAEIALKESQAALLSRGQRLRRQQEALL 199

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
             +  +      +N       +      +  + S  + +            +        
Sbjct: 200 SLAQHQVLYNGDLNAALQLLSETAAQALDVERVSIWFYNPERSQIFLKDLYQLSRGEHSH 259

Query: 326 V-----DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
                 D+ P  F       +  A+ +       + +DD  +  G+++++D P       
Sbjct: 260 SGELQSDRYPTYFAALEAEEVIAADQAQSDWRTREFLDDWLLPQGITSMMDVPI------ 313

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
                  RS    +      H             F                 +  E  D 
Sbjct: 314 -------RSSGKTVGVICHEHVGPPRHWTIEEQNF--------ANCLAYMISLAIEARDR 358

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           + ++  +     +  +I E  + GI   +  G  +  N+   +  GY  +++L+      
Sbjct: 359 QRSELALRQSEERFRAIFEQAAIGIFQTDATGKYIQVNQRFCQFSGYSADELLQLRMQDI 418

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY---SLT 557
                       L   L     Q+         K  +     + I  +     +      
Sbjct: 419 THPVDLRRCLE-LRNALFSGELQSFSLEKRLRQKSGQWRWANVTISAVQHPDGFPCTIGV 477

Query: 558 MHDISEWKQEKNKLS 572
           + DISE KQ + +  
Sbjct: 478 IEDISERKQAEAQRQ 492



 Score = 71.6 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 31/270 (11%), Positives = 76/270 (28%), Gaps = 22/270 (8%)

Query: 43  NPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRF----------TWNIDAH 92
            P H + E+ NF +     +S                    RF           +  DA 
Sbjct: 330 PPRHWTIEEQNFANCLAYMISLAIEARDRQRSELALRQSEERFRAIFEQAAIGIFQTDAT 389

Query: 93  GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN--TWYGKTTLW 150
           G   ++++   +  G  A +++ +R+ D++  + +     + + L      ++  +  L 
Sbjct: 390 GKYIQVNQRFCQFSGYSADELLQLRMQDITHPVDLRRCLELRNALFSGELQSFSLEKRLR 449

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFR-GFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
              G   +  + ++A+          GF    G++          A  +  D     L +
Sbjct: 450 QKSGQWRWANVTISAVQHPD------GFPCTIGVIEDISERKQAEAQRQSADSFRRALID 503

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
                  +     +    +    + RM +      E             YP     E+++
Sbjct: 504 RAAEGICMCHGIEEFPYVRFTVWNQRMVSLTGYTMEEINRLGW--YQTLYPDSEIREAAI 561

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
                      +   ++          +  
Sbjct: 562 ERMSRMRQ-GEDLMAEEWTITRADGEQRVV 590


>gi|298528280|ref|ZP_07015684.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298511932|gb|EFI35834.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 940

 Score =  360 bits (924), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 127/743 (17%), Positives = 262/743 (35%), Gaps = 71/743 (9%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH---IGDLLKRQNT 142
            +     G    ++  + + +G  +   +   + D+S  ++IDP +    I  L ++   
Sbjct: 33  IFTSTPGGRFLSVNPAMARMLGYDSSHDLIDSITDISAQVYIDPLDRMEFIRLLEEQVEV 92

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
           +  +  +   +GT   + +   A  + +   + +  +GF  +          A  +   +
Sbjct: 93  FNHECRIRRRDGT--VLWVAQNARLVRNDKGKITHIQGF--ITDVSAKKQAEAELREKTE 148

Query: 203 KFSHLHEIKKGHSSVEKEKYD--IFSQQSPPPHLRMKNKVSSLTEYYAHKDD--VLKTEK 258
           + + + E      S+   +                +          + H DD   ++T  
Sbjct: 149 RLNSIAENMLDMVSITDLEGRFKYVGPSHAVLGYDLDYLPGRNVMEFVHPDDYKEVETSF 208

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
              L   E     +  +   +      + +   + +    + E L      +     ++ 
Sbjct: 209 GEFLACREDGRSVEYRYRRADGEYVWLETFGKFILDQDGAAREILFSTRDVTERRQAEQA 268

Query: 319 ENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
              +   V                           Y+ +  +E+   L T      + D 
Sbjct: 269 LRESETRVRTKLEAILE-----------------PYEDLGGLELGDILDTRTVQDFMDD- 310

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
                  L       +    RL          + + F                 +     
Sbjct: 311 ----FYYLTNIGGAIVDLKGRLLAST--GWQEICVNFHRAHPDALANCRESDLMLSSGLT 364

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
             +    K +  +  + +        I +       L   +     F +  E++  +   
Sbjct: 365 PGQFKLYKCKNNMWDMAT-------PIVVGGHHLGNLYIGQ-----FVFDDEELDIET-- 410

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM 558
                            I +L   + L++ T+    +       ++I  L +S+      
Sbjct: 411 --FRDQAGKYGFDQEAYIRALHKVRRLDRDTVNRAMQ-FYSRFAMLISSLSWSN--LELA 465

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
             + E K          + A+  +  KS+FLA +SHEIRTP+  I+G  +++++    P 
Sbjct: 466 RSVHEQKVA-------TQQADVANKAKSEFLANMSHEIRTPINGIMGILQLLQSTELSP- 517

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
                 EY N    S + +  +++D+LD+S+IE+G+M +  E V L +       L  + 
Sbjct: 518 ---EQQEYTNMGIVSASRLTRLLSDILDLSRIEAGQMEIRKEQVDLKKLCDSVDELFMVT 574

Query: 679 ANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS---- 733
           + EK I +  +    +P++ L D   ++QI  N++ NA+ FT  G +I ++         
Sbjct: 575 SREKDISLEFTQDPCLPQVLLGDEARLQQIVFNLVGNALKFTQEG-RISVNWHLQQRRGR 633

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
           +  V+L V DTG+GMT+  L++  KPF Q  N+   R +G GLGL + K +V+   G   
Sbjct: 634 DARVLLTVSDTGIGMTDDTLDELFKPFAQAENAFTRRYQGAGLGLSIVKRLVELMHGTLA 693

Query: 794 IFSTPAKGTLIEIIFPLYDTSHP 816
           + STP +G+   +  PL     P
Sbjct: 694 VDSTPGQGSTFFVSLPLGMPEEP 716



 Score =  122 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 34/269 (12%), Positives = 84/269 (31%), Gaps = 12/269 (4%)

Query: 324 ETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
           E +   P+  F     G     NP+   +  Y S  D+     + ++ D       + + 
Sbjct: 24  EILRDAPVGIFTSTPGGRFLSVNPAMARMLGYDSSHDL-----IDSITDISAQVYIDPLD 78

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
            +   R     +        I+      L +        N   +     G   +    + 
Sbjct: 79  RMEFIRLLEEQVEVFNHECRIRRRDGTVLWVAQNARLVRNDKGKITHIQGFITDVSAKKQ 138

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            + ++  +  +L SI E   D ++I + EG       +   + GY ++ +  +    F+ 
Sbjct: 139 AEAELREKTERLNSIAENMLDMVSITDLEGRFKYVGPS-HAVLGYDLDYLPGRNVMEFVH 197

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR----IIIKKLPFSSCYSLTM 558
            +    +     E L+                + + + L      I+ +   +     + 
Sbjct: 198 PDDYKEVETSFGEFLACREDGR-SVEYRYRRADGEYVWLETFGKFILDQDGAAREILFST 256

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSD 587
            D++E +Q +  L  ++     +     +
Sbjct: 257 RDVTERRQAEQALRESETRVRTKLEAILE 285


>gi|291288623|ref|YP_003505439.1| PAS/PAC sensor hybrid histidine kinase [Denitrovibrio acetiphilus DSM
            12809]
 gi|290885783|gb|ADD69483.1| PAS/PAC sensor hybrid histidine kinase [Denitrovibrio acetiphilus DSM
            12809]
          Length = 1271

 Score =  360 bits (924), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 108/533 (20%), Positives = 203/533 (38%), Gaps = 28/533 (5%)

Query: 282  QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNL 341
            +  +++      +   +  E   +     L             TV        +   G +
Sbjct: 519  RLRERKEVEKTISLLNQELERKVNVRTAQLKESEVRFRTAFESTVHGM---LLIALSGEI 575

Query: 342  FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401
               N SF  +  Y   + +       T+       D       M                
Sbjct: 576  LQLNNSFAAMLGYDESELVG-----ETVYSITYQDDIKLTTEAMRSIVSGEQNHYDITKR 630

Query: 402  TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
             ++ +  N +  T       +     +          +    +++ +        I E +
Sbjct: 631  YVRKDG-NLVIATANAALIRDNKSNPIYIVANVVNITEAEHTRKERDK-------IFELS 682

Query: 462  SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
             D I I + +G I   N A  +L  Y   D++   F   L  +    +      +  LD 
Sbjct: 683  RDIIGIADLDGNIHYLNSAFGELLSYSTADVINSNFRDILRPSDIEQLEIVFQSLQELD- 741

Query: 522  RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE 581
               ++  ++ +  +  +  +         ++       D ++ K  +N L   K  AE+ 
Sbjct: 742  -SLVDFESMHTLPDGSIKWISWSFTADRVNNRIYSIGRDATDRKVYENTLKDQKDKAEQA 800

Query: 582  SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
               KS+F+A +SHEIRTPL A+IGFSE++  +      + +   Y N I  SG  +L ++
Sbjct: 801  GRAKSEFMANISHEIRTPLNAVIGFSELLSARA----QDSKAASYINSIKTSGKALLTLI 856

Query: 642  NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILAD 700
            ND+LDISK+E+        P S+   + E + +         I +    A + P  ++ D
Sbjct: 857  NDILDISKLEAAATEPVLAPASIKMLLEEMVRIFGYRTEHTDIKLGYFIAADTPKTMMLD 916

Query: 701  LRSVKQIALNILSNAIHFTPSGGQIIISTTHT----SNEEVILRVRDTGVGMTNYELEKA 756
            +  ++Q+ LN++ NA+ FT  G ++ IS           ++ + V+DTG+G+   E+E  
Sbjct: 917  ISRLRQVLLNLIGNAVKFTERG-EVSISVRCEAVNDERVDLYISVKDTGIGIPKEEMEDI 975

Query: 757  MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             + F Q       +  GTGLGL ++  +VD   G+  + S    G+   +I P
Sbjct: 976  FQAFRQRAGHNINKYGGTGLGLSISSKLVDMMGGEIRVESKVGIGSTFTVILP 1028



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 70/670 (10%), Positives = 177/670 (26%), Gaps = 83/670 (12%)

Query: 40  KKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEIS 99
               P   S E  N++  + E  S    +     FV D           +D       ++
Sbjct: 92  FSIPPISKS-EVENYSTMSAEMESALMDMQIYEEFVEDTDN----IITRVDKDARFTYVN 146

Query: 100 EELPKTIGNYAFKMIGMRLCDVSDILHIDP-----NNHIGDLLKRQNTWYGKTTLWPIEG 154
                  G     +IG    D + +   +      N+ I + LKR             +G
Sbjct: 147 TACEGLYGVSRDVLIGQSAFDFTHVDDREITINAFNSWIKNKLKRT---SFVNRQILSDG 203

Query: 155 TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214
           + ++V   +     Y  + E        I           A  K+ +     + +  +  
Sbjct: 204 SVIHVLWTINL--HYGSSGELLYIN--SIAKDITDGYLAEAALKKSESSLRAILDSSQDI 259

Query: 215 SSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQED 274
             +      I             +  S L     +   +    +  ++        +   
Sbjct: 260 VLLLDSDGTILDCNQQFCKEVEIDIASVLGCNLWNIRGMNTNGERRVIFDNVVRTGKPCR 319

Query: 275 FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP------ETVDK 328
           F            Y   +     E   +++   + +     ++   +          + +
Sbjct: 320 FEDY-GADNWYSVYIAPIALEDMEQKRFVAFAKNITYRKEAEQFARMNEHRHKSLAILGQ 378

Query: 329 CPIP----FFVYSHGNLFYANPS-------FLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
                      YS  +      S       +        +   +        L A +  +
Sbjct: 379 MYEADFDEILEYSLESSIEQTQSIGGYIVEYDASIGVSKLKAFKGHSNTEVTLCADQPLE 438

Query: 378 NNAIKPVM---------LYRSDRTCIAASAR----------LHTIQWNRENSLAMTF--- 415
            +    +          L    R+ I               L  +    E  L +     
Sbjct: 439 VSRFHDLYTVLRNKEPVLNNRQRSVIPMPDTKTAEYNENSMLVPLMAQGEIRLILAVYGK 498

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINK------------------RKMEIEVMQLCSI 457
                 ++               + +  +                   +++   ++  + 
Sbjct: 499 SRNYNLSEAIGLTHFMEGVWRLRERKEVEKTISLLNQELERKVNVRTAQLKESEVRFRTA 558

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
            E+T  G+ +I   G IL  N + + + GY   +++ +       Q+   +    +  I+
Sbjct: 559 FESTVHGMLLIALSGEILQLNNSFAAMLGYDESELVGETVYSITYQDDIKLTTEAMRSIV 618

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSH 573
           S +     +       K+  L+        +  +          + +I+E +  + +   
Sbjct: 619 SGEQNH-YDITKRYVRKDGNLVIATANAALIRDNKSNPIYIVANVVNITEAEHTRKERDK 677

Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYANYIDR 632
                 ++    +D    + H + +    ++ +S   + N  F  +  P  IE    + +
Sbjct: 678 I-FELSRDIIGIADLDGNI-HYLNSAFGELLSYSTADVINSNFRDILRPSDIEQLEIVFQ 735

Query: 633 SGNLVLDIVN 642
           S   +  +V+
Sbjct: 736 SLQELDSLVD 745



 Score = 45.0 bits (105), Expect = 0.047,   Method: Composition-based stats.
 Identities = 14/137 (10%), Positives = 35/137 (25%), Gaps = 9/137 (6%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG-KTT 148
           D  G +  ++    + +      +I     D+     I+    +   L+  ++    ++ 
Sbjct: 690 DLDGNIHYLNSAFGELLSYSTADVINSNFRDILRPSDIEQLEIVFQSLQELDSLVDFESM 749

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +G+  ++     A     R       R + I              K    K     
Sbjct: 750 HTLPDGSIKWISWSFTA----DRVNN----RIYSIGRDATDRKVYENTLKDQKDKAEQAG 801

Query: 209 EIKKGHSSVEKEKYDIF 225
             K    +    +    
Sbjct: 802 RAKSEFMANISHEIRTP 818



 Score = 41.6 bits (96), Expect = 0.55,   Method: Composition-based stats.
 Identities = 33/352 (9%), Positives = 92/352 (26%), Gaps = 25/352 (7%)

Query: 93  GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPI 152
           G + +++      +G    +++G  +  ++    I         +      +   T   +
Sbjct: 573 GEILQLNNSFAAMLGYDESELVGETVYSITYQDDIKLTTEAMRSIVSGEQNHYDITKRYV 632

Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK--RLDKKFSHLHEI 210
                 V     A  I         +    +V++   ++  +   K   L +    + ++
Sbjct: 633 RKDGNLVIATANAALIRDNKSNPI-YIVANVVNITEAEHTRKERDKIFELSRDIIGIADL 691

Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270
                 +     ++ S  +          +  L      + +++      L    +S + 
Sbjct: 692 DGNIHYLNSAFGELLSYSTADVINSNFRDI--LRPSDIEQLEIVFQSLQEL----DSLVD 745

Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330
            +      + +       F   + N++         +         + ++   +      
Sbjct: 746 FESMHTLPDGSIKWISWSFTADRVNNRIYSIGRDATDRKVYENTLKDQKDKAEQ------ 799

Query: 331 IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390
                   G    A   F+    ++    +    G S LL A       A     +  S 
Sbjct: 800 -------AGR---AKSEFMANISHEIRTPLNAVIGFSELLSARAQDSKAASYINSIKTSG 849

Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
           +  +     +  I      +      P        E +   G   E  D ++
Sbjct: 850 KALLTLINDILDISKLEAAATEPVLAPASIKMLLEEMVRIFGYRTEHTDIKL 901


>gi|294501501|ref|YP_003565201.1| two-component sensor histidine kinase PhoR [Bacillus megaterium QM
           B1551]
 gi|294351438|gb|ADE71767.1| two-component sensor histidine kinase PhoR [Bacillus megaterium QM
           B1551]
          Length = 590

 Score =  360 bits (924), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 88/364 (24%), Positives = 169/364 (46%), Gaps = 25/364 (6%)

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
           E++  +L +++E    G+ +I+  G I   NRA  + F    +D L   +    E     
Sbjct: 242 EMQQDRLRTLIENMGSGMLLIDSRGYINLVNRAYKEQFHIHPDDFLYHLYYEVFEH---K 298

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWK 565
            +   + +I   ++ +  +++ L    E +   +                L  HDI+E K
Sbjct: 299 EIIKLVEKIFMTEV-KVRKQVVLPLNIERRYFDVYGAPIIGLNDEWKGIVLVFHDITELK 357

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + +                + DF+A VSHE++TP+T+I GFSE + +   G + +P+  +
Sbjct: 358 KLEQV--------------RRDFVANVSHELKTPITSIKGFSETLLD---GAMEDPQLRQ 400

Query: 626 -YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
            + + I      +  ++ DLLD+SK+E     L    V L+  + E  +++   A EK I
Sbjct: 401 QFLSIILTESQRMESLIQDLLDLSKVEQQGFKLSIHSVDLNTLLYEVTTVLSNRATEKEI 460

Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744
            +          I  D + + Q+ +N++ NA+ +T  GG + +S      E + + V+DT
Sbjct: 461 TLTLDTLPEEAWIDGDSQRLMQVFVNLIGNALMYTMPGGTVHVSLE-EEEETITVHVQDT 519

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G+ + E+ +  + F ++  ++     GTGLGL + K +V+A+ G+  + S   KGT  
Sbjct: 520 GIGIDSDEISRIFERFYRVDKARSRNSGGTGLGLAIVKHLVEAHRGEIEVKSEVNKGTTF 579

Query: 805 EIIF 808
            +  
Sbjct: 580 SVKL 583


>gi|88813407|ref|ZP_01128644.1| multi-sensor hybrid histidine kinase [Nitrococcus mobilis Nb-231]
 gi|88789373|gb|EAR20503.1| multi-sensor hybrid histidine kinase [Nitrococcus mobilis Nb-231]
          Length = 831

 Score =  360 bits (923), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 96/631 (15%), Positives = 206/631 (32%), Gaps = 22/631 (3%)

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY 246
                        L        +   G ++ E+    +   +  P  +     +  L   
Sbjct: 62  LTESVAAGVHAAELPFPDPQTRQEAVGVATDEETVLVLIGGKPCPEAVVEVRLLLPLLGA 121

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
                  +         +  ++   +     ++  +   +Q    +              
Sbjct: 122 ALQGQGAVLVAAGHSRAARRAAAEAEALAGALDATRRELQQALHAVDQEL---------T 172

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGG 365
                     E  +L   T+             G +   N     LT + S +       
Sbjct: 173 QRKLAEQALQEERDLLTVTLTSIGDAVITTDTEGRITSLNAMAESLTGWASAEAAGRPLD 232

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
               +   +        P      +   +  +     ++ +      +        +   
Sbjct: 233 AVFRIVNEQTRRT-VDNPATRTLREGVIVGLANHTVLVRKDG-TERPIDDSAAPIRDDQG 290

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKL 484
           + +    +  +  + R  +  ++    +  +++E   D  I + + EG   S N  V ++
Sbjct: 291 QVLGCVLVFRDITERRKAEAALQENERRFRTLVEQVKDYAIFMTDAEGRATSWNEGVRRV 350

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
            G+   D L +     +           L E+                 K+         
Sbjct: 351 LGFEEADFLGQDIVPTIFTPEDVESGVPLRELEQAAATGKAGSDRWMRRKDGSRFFATGT 410

Query: 545 IKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
              L   +     +   M D +E K+ +++L        + +  KS+FLA + HE+R PL
Sbjct: 411 TAALHDKAGKLVNFMKVMRDQTEQKRLEDELRKTAADLSEANRRKSEFLATLGHELRNPL 470

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
             I    E++K     P              R    ++ +++DLLD+S+I  GK+ L   
Sbjct: 471 APIRMGLELMKMAADSPAKMEEIRGMME---RQVLQMVRLIDDLLDVSRITRGKLQLRIC 527

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720
            V++   V  A+ + + + +E    +  +       + AD   + Q+  N+L+N+  +TP
Sbjct: 528 RVAVANVVQNAVEMARPFIDEADHQLTVAVPPQPIHLDADPNRLAQVFSNLLNNSAKYTP 587

Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
            GG I +S       +V++ +RD G+G+         + F Q+    +    G G+GL L
Sbjct: 588 EGGHIWLSAE-RQGSDVVVTIRDNGIGIPADMQTSIFEMFTQVDRPLEQGYTGLGIGLTL 646

Query: 781 AKAMVDANMGKFYIFST-PAKGTLIEIIFPL 810
            K +V+ + G+    S    +G+  E+  PL
Sbjct: 647 VKQLVEMHGGRIDARSEGSGRGSAFEVRLPL 677



 Score = 67.7 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 27/249 (10%), Positives = 68/249 (27%), Gaps = 17/249 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMR----LCDVSDILHIDPNNHIGDLLKRQNTW- 143
            D  G +  ++       G  + +  G         V++      +N     L+      
Sbjct: 202 TDTEGRITSLNAMAESLTGWASAEAAGRPLDAVFRIVNEQTRRTVDNPATRTLREGVIVG 261

Query: 144 -YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
               T L   +GT    PID +A PI     +  G     +           A  +  ++
Sbjct: 262 LANHTVLVRKDGT--ERPIDDSAAPIRDDQGQVLGC--VLVFRDITERRKAEAALQENER 317

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK------DDVLKT 256
           +F  L E  K ++    +     +  +      +  + +               D     
Sbjct: 318 RFRTLVEQVKDYAIFMTDAEGRATSWNEGVRRVLGFEEADFLGQDIVPTIFTPEDVESGV 377

Query: 257 EKYPLLTSEESSLPEQEDF-HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
               L  +  +     + +    + +++        L + + +   ++      +     
Sbjct: 378 PLRELEQAAATGKAGSDRWMRRKDGSRFFATGTTAALHDKAGKLVNFMKVMRDQTEQKRL 437

Query: 316 DEGENLTPE 324
           ++    T  
Sbjct: 438 EDELRKTAA 446



 Score = 48.9 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/139 (8%), Positives = 37/139 (26%), Gaps = 3/139 (2%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRL-CDVSDILHIDPNNHIGDLLKRQNTWY 144
            +  DA G     +E + + +G      +G  +   +     ++    + +L +   T  
Sbjct: 331 IFMTDAEGRATSWNEGVRRVLGFEEADFLGQDIVPTIFTPEDVESGVPLRELEQAAATGK 390

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
             +  W                 ++ +  +   F    ++             ++     
Sbjct: 391 AGSDRWMRRKDGSRFFATGTTAALHDKAGKLVNFMK--VMRDQTEQKRLEDELRKTAADL 448

Query: 205 SHLHEIKKGHSSVEKEKYD 223
           S  +  K    +    +  
Sbjct: 449 SEANRRKSEFLATLGHELR 467


>gi|315498970|ref|YP_004087774.1| multi-sensor signal transduction histidine kinase [Asticcacaulis
           excentricus CB 48]
 gi|315416982|gb|ADU13623.1| multi-sensor signal transduction histidine kinase [Asticcacaulis
           excentricus CB 48]
          Length = 864

 Score =  360 bits (923), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 146/669 (21%), Positives = 262/669 (39%), Gaps = 54/669 (8%)

Query: 182 GIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL--RMKNK 239
           G V      N+P    +        L        S   E+    + +        ++++ 
Sbjct: 193 GRVRAVARLNNPLRDAENTRDNQIVLINAAGDILSASDERLTGLNIRKALTVTPEQIRDN 252

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ----NN 295
            +S        ++        +   E        +       +         +       
Sbjct: 253 ANSARISQGTLEEKGFVRIAAVREGENGLTTLYVEPSNAAAARNWLTTATLFIGPLIIGA 312

Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKY 354
                  +  R +   +  ++  E      V+      + +   +   + +    ++  +
Sbjct: 313 LFGMLLIVQSRRNSEAARQYEAKETRYRLAVEAARCGIWEWDLESDQVFMSEVTGVMFGW 372

Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
                  +A     LL           K ++  R              +  +   ++ + 
Sbjct: 373 GGS---GVATTNEVLLRIAPEHRETVRKALLNARGHGALD----VSFRVPGDNGRAIWID 425

Query: 415 FIPFEKANQFPEN-MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
                   + P      +G+  +  + R  + + +    +L   + + SD   + +R G 
Sbjct: 426 ARGQATGPRGPAGFTRLSGVALDVSEERAAQSRAQRAEARLTGAINSVSDAFVLWDRRGR 485

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
           ++  N    + F      +        +E+     +     E +       +E       
Sbjct: 486 LVMWNAVFGRTFSIDPRFLKAGTSRELIEKVMAIAIRR--QEPVIDGREGVVEAEL---- 539

Query: 534 KEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI---------------- 577
            + + + +              +T  DI+  K ++      ++                 
Sbjct: 540 NDGRWIQISESRTL---EGGTVVTGADITAIKVQEEMSRRNEEQLQAMVDKLEQSRRIQT 596

Query: 578 ------------AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
                       AE+ +  KS+FLA +SHE+RTPL AI GFSE++  + FGPLG+ RY E
Sbjct: 597 DLAKKYEMAKIRAEQANHAKSEFLANMSHELRTPLNAINGFSEIMAGEMFGPLGHARYKE 656

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           YA  I  SG  +L ++ND+LD+SKIE+GKM L FEPVS++E V + + LV+  A +  + 
Sbjct: 657 YAGDILSSGQHLLALINDILDMSKIEAGKMTLRFEPVSVEEVVDDTLRLVRQRAEKAGLK 716

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +R      +P I AD R++KQI LNIL+NAI FTPSGG I +S   T +  + L V DTG
Sbjct: 717 MRVHL-PQLPDIQADYRALKQILLNILTNAIKFTPSGGTITVSAVPTDS-FMHLYVADTG 774

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+   ++E+  +PF QI N      EGTGLGL L K++++ + G+  + ST  +GT + 
Sbjct: 775 IGIAPKDMERLARPFEQIENQFSRTKEGTGLGLALTKSLIEMHSGRLEVDSTVGQGTTVS 834

Query: 806 IIFPLYDTS 814
           +I PL  TS
Sbjct: 835 VILPLTQTS 843


>gi|149178944|ref|ZP_01857521.1| multi-sensor hybrid histidine kinase [Planctomyces maris DSM 8797]
 gi|148842218|gb|EDL56604.1| multi-sensor hybrid histidine kinase [Planctomyces maris DSM 8797]
          Length = 1165

 Score =  360 bits (923), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 136/735 (18%), Positives = 252/735 (34%), Gaps = 66/735 (8%)

Query: 124 ILHIDPN--NHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF 181
              I P   N + + +    +W  K      +G   ++ +       Y  N+     R  
Sbjct: 280 PPDIRPQIQNAVKNAINAGQSWDLKLPFITAKGR--HIWVRAQGELEYQNNKPV---RLV 334

Query: 182 GIVHVNRVDNDPRAL-----------GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP 230
           G       +    A              +L+       EI    +  E            
Sbjct: 335 GAFQDITREKQLEAEFTLLQDHQFSTRAQLESVIRAATEISIIATDTEGLITLFSPGAER 394

Query: 231 PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTI------------ 278
                 +  +   T  + H+   L+     L  +  S +   E F               
Sbjct: 395 LLGYSAEEMIGIKTLLHFHQTSELEQRSRELTDTLGSKVEGFEIFFMPARDGVCDKHEWT 454

Query: 279 ----NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE----TVDKCP 330
               +  +   +     ++    +   YL      +     ++    + E     +D  P
Sbjct: 455 YICKDGTERIVELTVTVIRGKQNQIDGYLGIAIDVTQKKIQEQQLFESHEKIKHLIDALP 514

Query: 331 IPFFVYS-HGNLFYANPSFLLLTKYKSVDDIE--IAGGLSTLLDAPKLSDNNAIKPVMLY 387
              +     G + Y N +       +   +       G   + D+   S  +    + + 
Sbjct: 515 AAAYTCDNTGLITYYNQAAAEFWGCEPELNSPDYRFCGSVKMFDSEGNSLAHEDCWMSVA 574

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
             +R        +  I+    N            N   + +    +  +  D    +  +
Sbjct: 575 LKNREIYHCKEIV--IECENGNRKTALAHVSPITNFEGDMIGAINVVVDISDRIALENSL 632

Query: 448 EIEVMQLCS---ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
                +L     IL+     +A     G+I   N    K+ GY  E+ + +   +     
Sbjct: 633 RETTARLELCLKILDQ-HAIVAETELNGVIRHVNDMFCKVSGYEREETIGQTHRIVNSGL 691

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHD 560
            P      + + +S       +       K  +L  L   I  +         Y    +D
Sbjct: 692 HPKEFWQNVFKTIST--VGMWQGEICNRRKNGELYWLDTTIAAMKDGEGKATGYLAIRND 749

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I+E +  +         A   S  KS+FLA +SHEIRTPLTAI+GF+E+++N        
Sbjct: 750 ITELRLAQE-------AALAASHSKSEFLANMSHEIRTPLTAILGFAELLRNDHEFASSA 802

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
            +  +    I  +GN +L ++ND+LD+SKIE+GK+ +      L   +    SL++  A 
Sbjct: 803 GKREQAVKTIQEAGNHLLTVINDILDLSKIEAGKVEIEKTSTQLFNILDHIESLLRPPAI 862

Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE--- 736
           EK + + T     +P  I  D   ++QI +N++ NA+ FT  G +I I        E   
Sbjct: 863 EKGVELVTRIETPLPDLIETDSTRLRQILMNLVGNAVKFTDKG-RIQIKVKFLEENESRF 921

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY-IF 795
           +   + D+G GM++ +  K    F Q   S   +  GTGLGL +++ +     G     +
Sbjct: 922 LKFEIEDSGPGMSDRQAAKMFMAFSQADTSVTRQHGGTGLGLVISRKLARLMGGDVSLAW 981

Query: 796 STPAKGTLIEIIFPL 810
           + P KGT   ++ P+
Sbjct: 982 TEPGKGTCFRVVLPV 996



 Score = 77.8 bits (190), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 44/408 (10%), Positives = 101/408 (24%), Gaps = 45/408 (11%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIG--------------MRLCDVSDILHIDPNNHIG 134
            D  G +   S    + +G  A +MIG               R  +++D L         
Sbjct: 379 TDTEGLITLFSPGAERLLGYSAEEMIGIKTLLHFHQTSELEQRSRELTDTLGSKVEGFEI 438

Query: 135 DLLKRQNTWYG--KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192
             +  ++      + T    +GT     ++L    I  +  +  G+ G  I         
Sbjct: 439 FFMPARDGVCDKHEWTYICKDGT--ERIVELTVTVIRGKQNQIDGYLGIAI--DVTQKKI 494

Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP-------PHLRMKNKVSSLTE 245
                    +K  HL +     +        I              P L   +     + 
Sbjct: 495 QEQQLFESHEKIKHLIDALPAAAYTCDNTGLITYYNQAAAEFWGCEPELNSPDYRFCGSV 554

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLP----EQEDFHTINLNQYTKKQYFGTL----QNNSK 297
                +      +   ++    +      ++      N N+ T   +   +     +   
Sbjct: 555 KMFDSEGNSLAHEDCWMSVALKNREIYHCKEIVIECENGNRKTALAHVSPITNFEGDMIG 614

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTP---ETVDKCPIPFFVYSHGNLFYANPSFLLLTKY 354
                +   +  +L     E         + +D+  I      +G + + N  F  ++ Y
Sbjct: 615 AINVVVDISDRIALENSLRETTARLELCLKILDQHAIVAETELNGVIRHVNDMFCKVSGY 674

Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
           +  + I      +  +    L      + V    S              +        + 
Sbjct: 675 EREETIGQ----THRIVNSGLHPKEFWQNVFKTISTVGMWQGEICN---RRKNGELYWLD 727

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
                  +   +      I  +  + R+ +             L   S
Sbjct: 728 TTIAAMKDGEGKATGYLAIRNDITELRLAQEAALAASHSKSEFLANMS 775



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/262 (10%), Positives = 72/262 (27%), Gaps = 14/262 (5%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGK 146
             + +G ++ +++   K  G    + IG     V+  LH      ++   +     W G+
Sbjct: 654 ETELNGVIRHVNDMFCKVSGYEREETIGQTHRIVNSGLHPKEFWQNVFKTISTVGMWQGE 713

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR-----LD 201
                  G   ++   +AA  +     + +G+    I +        +           +
Sbjct: 714 ICNRRKNGELYWLDTTIAA--MKDGEGKATGY--LAIRNDITELRLAQEAALAASHSKSE 769

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
              +  HEI+   +++      + +          + +     +   +    +  +   L
Sbjct: 770 FLANMSHEIRTPLTAILGFAELLRNDHEFASSAGKREQAVKTIQEAGNHLLTVINDILDL 829

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
              E     + E   T              L+  + E    L  R    L    +     
Sbjct: 830 SKIEA---GKVEIEKTSTQLFNILDHIESLLRPPAIEKGVELVTRIETPLPDLIETDSTR 886

Query: 322 TPETV-DKCPIPFFVYSHGNLF 342
             + + +           G + 
Sbjct: 887 LRQILMNLVGNAVKFTDKGRIQ 908


>gi|196232623|ref|ZP_03131475.1| PAS/PAC sensor signal transduction histidine kinase [Chthoniobacter
           flavus Ellin428]
 gi|196223385|gb|EDY17903.1| PAS/PAC sensor signal transduction histidine kinase [Chthoniobacter
           flavus Ellin428]
          Length = 364

 Score =  360 bits (923), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 104/370 (28%), Positives = 176/370 (47%), Gaps = 12/370 (3%)

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
           +       S++EA+ D +  I+ EG I   N A  +  G P E ++   F+ +  +   +
Sbjct: 3   KQASQYARSLIEASLDPLVTISGEGKITDVNEASVQATGVPRERLIGTVFSDYFTEPDKA 62

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWK 565
                  ++ S    +         T     +     + K              D++E K
Sbjct: 63  --REGYQKVFSEGFVRDYALAIRHITNRVTDVLYNASVYKDDKGRVLGVFAAARDVTERK 120

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + +  L       ++ S  KS+FLA +SHE+RTPL  IIGF+E + + + G L NP+  E
Sbjct: 121 RFEQSL-------QEASRMKSEFLANMSHELRTPLNGIIGFAEFLVDGKPGTL-NPKQKE 172

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           Y   I  SG  +L ++ND+LD++K+E+GKM+L      L +A+ E  ++ +  A +K I 
Sbjct: 173 YLGDILNSGKHLLQLINDVLDLAKVEAGKMDLTPVSFVLSQAIDEVCAVAKPLAQKKHIH 232

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +R + A  +  +  D +  KQ+  N+LSN I FT  GG + I  T        L V+DTG
Sbjct: 233 VRLTVAPELSCVTLDQQKFKQVLYNLLSNGIKFTDDGGNVGIFATPYDGSRFKLSVKDTG 292

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+   ++++  + F Q+ +    R EGTGLGL L + +V+   G   + S    G+   
Sbjct: 293 IGIKPEDIQRLFREFEQLESGASRRYEGTGLGLALTRKLVELQGGAINVESEVGVGSTFS 352

Query: 806 IIFPLYDTSH 815
           ++ PL     
Sbjct: 353 VVLPLVSEEA 362



 Score = 44.2 bits (103), Expect = 0.099,   Method: Composition-based stats.
 Identities = 14/129 (10%), Positives = 26/129 (20%), Gaps = 5/129 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           I   G + +++E   +  G    ++IG    D       D        +  +        
Sbjct: 23  ISGEGKITDVNEASVQATGVPRERLIGTVFSDYFTE--PDKAREGYQKVFSEGFVRDYAL 80

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                 TN    +   A           G   F                +   +  S   
Sbjct: 81  AIRHI-TNRVTDVLYNASVYKDDKGRVLGV--FAAARDVTERKRFEQSLQEASRMKSEFL 137

Query: 209 EIKKGHSSV 217
                    
Sbjct: 138 ANMSHELRT 146


>gi|86137001|ref|ZP_01055579.1| sensory box sensor histidine kinase/response regulator [Roseobacter
           sp. MED193]
 gi|85826325|gb|EAQ46522.1| sensory box sensor histidine kinase/response regulator [Roseobacter
           sp. MED193]
          Length = 753

 Score =  360 bits (923), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 97/413 (23%), Positives = 184/413 (44%), Gaps = 17/413 (4%)

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
                 +TF+    +      + Q   + E           ++E  +L  +    +D + 
Sbjct: 196 GALIWHLTFVVRSFSRIRSIMLTQALQQQELEGAYQRLLSQQVEAKRLALVARHANDSVL 255

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL-RQTL 525
           +I++   +   N A +++ GY  E+I  +     L    P      L +++     RQ  
Sbjct: 256 LIDQNNKVQWVNEAFTRITGYSFEEIQGREPGELLNH--PQTNQDTLDKLIEGRRARQPF 313

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKE 581
               L   K+   + L      +  +      Y     D++  KQ   +L  A+  AE+ 
Sbjct: 314 RLEILNRHKDGHDVWLETNQVPILGNQGGEMSYIAIERDMTAAKQNAQQLEEARLAAEEG 373

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
              KSDFLA +SHEIRTP+  +IG +++++        +     Y N I  S   +L ++
Sbjct: 374 GRAKSDFLATMSHEIRTPMNGVIGMAQLLEETDL----DGDQRLYTNTILSSAKTLLALI 429

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILAD 700
           ND+LD+SK+++G+++L+     L + + E I L+   A  K + +      ++PR ++ D
Sbjct: 430 NDILDLSKLDAGQISLNPCNFDLHQCLEETIQLLLTQAEAKGLTLEVERDVDLPRYLVGD 489

Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTS--NEEVIL--RVRDTGVGMTNYELEKA 756
              ++QI  N++ NAI FT  G ++ +S       +  V+L   + DTG+G+    L   
Sbjct: 490 DHRLRQILNNLVGNAIKFTEKG-RVKVSVEMEPAQDGGVLLNCAIIDTGIGIPKDMLTGI 548

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            + F Q   +   R  G+GLGL +++ + +A  G+  + S    G+   ++ P
Sbjct: 549 FERFSQADAAISRRFGGSGLGLAISRRLAEAMGGRITVTSEIGSGSCFTLVLP 601



 Score = 57.7 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 12/139 (8%), Positives = 39/139 (28%), Gaps = 6/139 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS--DILHIDPNNHIGDLLKRQNTWYGK 146
           ID +  ++ ++E   +  G    ++ G    ++      + D  + + +  + +  +  +
Sbjct: 257 IDQNNKVQWVNEAFTRITGYSFEEIQGREPGELLNHPQTNQDTLDKLIEGRRARQPFRLE 316

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                 +G +  V ++   +PI         +    I              +        
Sbjct: 317 ILNRHKDGHD--VWLETNQVPILGNQGGEMSY--IAIERDMTAAKQNAQQLEEARLAAEE 372

Query: 207 LHEIKKGHSSVEKEKYDIF 225
               K    +    +    
Sbjct: 373 GGRAKSDFLATMSHEIRTP 391


>gi|291485343|dbj|BAI86418.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           natto BEST195]
          Length = 579

 Score =  360 bits (923), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 89/372 (23%), Positives = 171/372 (45%), Gaps = 23/372 (6%)

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
           D     R  E++  +L +++E    G+ +I+  G I   NR+ +K F      +LR+ + 
Sbjct: 221 DLMEMTRTQEMQRDRLLTVIENIGSGLIMIDGRGFINLVNRSYAKQFHINPNHMLRRLYH 280

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSL 556
              E      +   + +I   + ++           E +   +  +    P        L
Sbjct: 281 DAFEHE---EVIQLVEDIFMTETKKCKLLRLPIKI-ERRYFEVDGVPIMGPDDEWKGIVL 336

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
             HD++E K+ +                + DF+A VSHE++TP+T+I GF+E + +    
Sbjct: 337 VFHDMTETKKLE--------------QMRKDFVANVSHELKTPITSIKGFTETLLDGAM- 381

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
                   E+ + I +    +  +V DLLD+SKIE     L  E     + + E  +L++
Sbjct: 382 -EDKEALSEFLSIILKESERLQSLVQDLLDLSKIEQQNFTLSIETFEPAKMLVEIETLLK 440

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
             A+EK I +  +   +   +  D   +KQ+ LN+++NA+ +TP GG + I+      + 
Sbjct: 441 HKADEKGISLHLNVPKDPQYVSGDPYRLKQVFLNLVNNALTYTPEGGSVAINVKPREKD- 499

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           + + V D+G+G+   E+ +  + F ++   +     GTGLGL + K +++A+ GK  + S
Sbjct: 500 IQIEVADSGIGIQKEEIPRIFERFYRVDKDRSRNSGGTGLGLAIVKHLIEAHEGKIDVTS 559

Query: 797 TPAKGTLIEIIF 808
            P +GT+  +  
Sbjct: 560 EPGRGTVFTVTL 571


>gi|167043517|gb|ABZ08213.1| putative histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
           [uncultured marine microorganism HF4000_APKG2J17]
          Length = 669

 Score =  360 bits (923), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 134/637 (21%), Positives = 257/637 (40%), Gaps = 23/637 (3%)

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKY-DIFSQQSPPPHLRMKNKVSSLTEY 246
           RV+   R L +  D+  S +  I +   ++ K+   + FS  +        +++      
Sbjct: 33  RVEERTRELSESEDRIRSIMENIVEAVITIGKDGAIETFSPAAEEMFCYAASEILGENVS 92

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPE-------QEDFHTINLNQYTKKQYFGTLQNNSKE- 298
                         +     +   +       +      +   +  +     ++   +  
Sbjct: 93  ILADKPERSEHDQYIENYHRTGKGKIIDVGFREVRGRRKDGTIFPAELAINEIRGGRRRK 152

Query: 299 -SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKS 356
                              E E      +D  P+   +    G    AN  +      + 
Sbjct: 153 FVGTLRDVTERKRAEKTLQESEARFRAVIDNSPMSILLKDCDGKYLMANREWHEWCNPEG 212

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
            + +                + +A     L +      A   R H         +     
Sbjct: 213 REIVGKT-------VDDFYPEEHAKAVKALDKEVLETGAPVVREHRTPRADGTEITTVLY 265

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476
            F         +   G   +       +        +  +++ +   GI++ +R+G  L 
Sbjct: 266 KFPVIGADGSIIGIGGTNVDITARVQAEEARREVESRFRTVVNSAPMGISLKDRDGKFLL 325

Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
            N+           +I  K F     +     +     +I         E I L      
Sbjct: 326 VNKTFGTWMDADPAEIEGKTFHELFAEKQAGEIESLDRKIFETGEESVDEAIRLFQDGVT 385

Query: 537 KLLSLRIIIKKLPFSSCYSLT---MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
           + +       +   +         M DI++ KQ +  L  A + AE  +  K++FLA +S
Sbjct: 386 RTIFTHKSPVR-SATGGIVAVSTIMIDITDRKQAEESLRKAMERAEFANRAKAEFLAHMS 444

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HE+RTPL AI+G+S+++K+Q FGPLGN +Y +Y   I  +G  +L I++D+LD+SK+E+G
Sbjct: 445 HELRTPLNAILGYSDILKSQVFGPLGNEKYSDYVENISAAGGHLLGILSDILDVSKVEAG 504

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713
           ++++    + +  A+ E   ++   A+  ++ + +  A ++PR+ AD R ++QI LN+LS
Sbjct: 505 ELDIEDSEIDIAAAIKECKIMMLERADIAKVSLASLVAGDLPRLRADRRRLRQILLNLLS 564

Query: 714 NAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GE 772
           NA+ F+   G++ I+    +   +++RV DTG+G+    + K ++PFGQ+  S   + GE
Sbjct: 565 NAVKFSHEKGKVSIAAETDAAGAIVIRVADTGIGIAPENMGKILQPFGQVKESYVGKPGE 624

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           G+GLGL L  +++D + G   I STP +GT + IIFP
Sbjct: 625 GSGLGLSLVNSLMDLHGGTLDIDSTPGEGTTMNIIFP 661



 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 68/162 (41%), Gaps = 7/162 (4%)

Query: 426 ENMPQNGIEPEDVDTRINKR--KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           +   +     + ++ R+ +R  ++     ++ SI+E   + +  I ++G I + + A  +
Sbjct: 18  QAESELREARDGLEQRVEERTRELSESEDRIRSIMENIVEAVITIGKDGAIETFSPAAEE 77

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE---KITLGSTKEEKLLS 540
           +F Y   +IL +  ++  ++   S  + Y+         + ++   +   G  K+  +  
Sbjct: 78  MFCYAASEILGENVSILADKPERSEHDQYIENYHRTGKGKIIDVGFREVRGRRKDGTIFP 137

Query: 541 LRIIIKKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEK 580
             + I ++       +  T+ D++E K+ +  L  ++     
Sbjct: 138 AELAINEIRGGRRRKFVGTLRDVTERKRAEKTLQESEARFRA 179



 Score = 77.8 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 45/434 (10%), Positives = 108/434 (24%), Gaps = 28/434 (6%)

Query: 35  ETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGY 94
           E  K   E    +S  +       Q     T  L      +   +   V     I   G 
Sbjct: 8   ELNKEIIERQQAESELREARDGLEQRVEERTRELSESEDRIRSIMENIVEAVITIGKDGA 67

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ------NTWYGKTT 148
           ++  S    +     A +++G  +  ++D      ++   +   R       +  + +  
Sbjct: 68  IETFSPAAEEMFCYAASEILGENVSILADKPERSEHDQYIENYHRTGKGKIIDVGFREVR 127

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +GT    P +LA   I    R     +  G +             +  + +F  + 
Sbjct: 128 GRRKDGTIF--PAELAINEIRGGRRR----KFVGTLRDVTERKRAEKTLQESEARFRAVI 181

Query: 209 EIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
           +       ++                      ++   T    + ++  K  K       E
Sbjct: 182 DNSPMSILLKDCDGKYLMANREWHEWCNPEGREIVGKTVDDFYPEEHAKAVKALDKEVLE 241

Query: 267 SSLPEQEDFHTINLNQ------YTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
           +  P   +  T   +         K    G   +        +             E E+
Sbjct: 242 TGAPVVREHRTPRADGTEITTVLYKFPVIGADGSIIGIGGTNVDITARVQAEEARREVES 301

Query: 321 LTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
                V+  P+        G     N +F         +          L    +  +  
Sbjct: 302 RFRTVVNSAPMGISLKDRDGKFLLVNKTFGTWMDADPAEI--EGKTFHELFAEKQAGEIE 359

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
           ++   +    + +   A  RL         +  +        +     +  + I  +  D
Sbjct: 360 SLDRKIFETGEESVDEA-IRLF----QDGVTRTIFTHKSPVRSATGGIVAVSTIMIDITD 414

Query: 440 TRINKRKMEIEVMQ 453
            +  +  +   + +
Sbjct: 415 RKQAEESLRKAMER 428



 Score = 44.2 bits (103), Expect = 0.079,   Method: Composition-based stats.
 Identities = 9/137 (6%), Positives = 30/137 (21%), Gaps = 5/137 (3%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL-KRQNTWYGKTT 148
           D  G    +++     +     ++ G    ++           +   + +       +  
Sbjct: 318 DRDGKFLLVNKTFGTWMDADPAEIEGKTFHELFAEKQAGEIESLDRKIFETGEESVDEAI 377

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +G      I     P+ S            I              ++  ++    +
Sbjct: 378 RLFQDGVTR--TIFTHKSPVRSATGGIVAVSTIMI--DITDRKQAEESLRKAMERAEFAN 433

Query: 209 EIKKGHSSVEKEKYDIF 225
             K    +    +    
Sbjct: 434 RAKAEFLAHMSHELRTP 450


>gi|332528708|ref|ZP_08404685.1| two-component system sensor-response regulator hybrid protein
           [Hylemonella gracilis ATCC 19624]
 gi|332041774|gb|EGI78123.1| two-component system sensor-response regulator hybrid protein
           [Hylemonella gracilis ATCC 19624]
          Length = 1345

 Score =  360 bits (923), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 120/668 (17%), Positives = 224/668 (33%), Gaps = 34/668 (5%)

Query: 177 GFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM 236
           GF  F  V+   V         RL    ++   +           +   +        + 
Sbjct: 190 GFLFFLPVYSEDVRAKAPQDRLRLAIGLAYTPLVIGEVVFQMDLPWPQLAVNLYDAEEQG 249

Query: 237 KNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ---EDFHTINLNQYTKKQYFGTLQ 293
             +    +           T   PL       L E      F         +      + 
Sbjct: 250 GPRRFFSSSALDAPAAEGLTRTVPLELYGRRWLVEVNATPVFIQAMQLNSPRYVVGLMVG 309

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLT 352
            ++  +                   +      +D            G +   N +   + 
Sbjct: 310 ASALVALLLYVSLVSAQRRRQALIEDARLAAILDGTSDAIIGKDLHGRVTSWNRAAAEIF 369

Query: 353 KYKSVDDIE-----------IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401
            Y S + +                  ++L      +  A       R + T I       
Sbjct: 370 GYASWEAVGKTLSELIVPADRQAEELSILARIGRGETVAPIATQRLRRNGTLIDVMVTAS 429

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT-RINKRKMEIEVMQLCSILEA 460
            ++      +       +  ++         +     +  +    ++      L S+++A
Sbjct: 430 PVRDADGQVVGAASTLHDMTDELIARKSMLELNASLEEQVKERTARLAASERFLHSLIDA 489

Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520
               ++  + +     +NR   K FG   E++        + +    +   Y+   L   
Sbjct: 490 LPGLVSYWDTDMRCRYSNRTYQKWFGRSPEEMNGISRQELMGEELFRLNEPYIQAALR-G 548

Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKI 577
             Q +E+       + K ++       +        Y +   D++  KQ +  L  AK+ 
Sbjct: 549 EPQVMERAVTL--PDGKTINTLANFLPVFEEGVVCGYIVVSTDVTVLKQAEEALVKAKQK 606

Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
           AE  +  KSDFLA +SHEIRTP+ AI+G   +++ Q   P       E    I  +G  +
Sbjct: 607 AEDATQAKSDFLANMSHEIRTPMNAILGLCYLLEQQSLSPTS----REMVQKIHAAGKTL 662

Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN-IPR 696
           L I+ND+LD SKIE+  M +   P  L + +    S++      K + +      +    
Sbjct: 663 LTIINDVLDFSKIEAQHMVIEQVPFRLSDVLDNLASIMSASLGSKPLELVVGPPPDGANY 722

Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH---TSNEEV--ILRVRDTGVGMTNY 751
           ++ D   + Q+ +N+ SNAI FT  G ++ +       T N  V     VRDTG+G+   
Sbjct: 723 LIGDRLRLGQVLVNLASNAIKFTGQG-EVEVRVDRLPDTGNGRVMLRFSVRDTGIGIAPD 781

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
           + E     F Q   S      GTGLGL +++ +V    G+  + S P +G+      P +
Sbjct: 782 KQEMIFHAFSQADTSTTRSFGGTGLGLAISRHLVALMGGRLQVHSAPGQGSNFHFELP-F 840

Query: 812 DTSHPHDC 819
           + S+P D 
Sbjct: 841 ELSNPMDS 848



 Score =  105 bits (263), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 55/429 (12%), Positives = 129/429 (30%), Gaps = 41/429 (9%)

Query: 169 YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228
                EF G  GFG +   RV     A   RL +         K  ++   ++  I   +
Sbjct: 83  RDIALEFPGSHGFGFIR--RVPRANEAAFLRLARSEHGPDFQIKELAAHSDDRLVIQYIE 140

Query: 229 SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288
               +                 +   +      +    ++L +                +
Sbjct: 141 PMAQNRAALGLDIG-------SEGRRRLAAVEAMRENRATLSQPLTLVQAAGKLDQGFLF 193

Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSF 348
           F  + +    +      ++   L+        +  E V +  +P               +
Sbjct: 194 FLPVYSEDVRAKAP---QDRLRLAIGLAYTPLVIGEVVFQMDLP---------------W 235

Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD--RTCIAASARLHTIQWN 406
             L    ++ D E  GG      +  L    A         +              +   
Sbjct: 236 PQL--AVNLYDAEEQGGPRRFFSSSALDAPAAEGLTRTVPLELYGRRWLVEVNATPVFI- 292

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
              ++ +    +        +     +    + +   +R+  IE  +L +IL+ TSD I 
Sbjct: 293 --QAMQLNSPRYVVGLMVGASALVALLLYVSLVSAQRRRQALIEDARLAAILDGTSDAII 350

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
             +  G + S NRA +++FGY   + + K  +  +           L+ +  +   +T+ 
Sbjct: 351 GKDLHGRVTSWNRAAAEIFGYASWEAVGKTLSELIVPADRQA--EELSILARIGRGETVA 408

Query: 527 KITLGS-TKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKE 581
            I      +   L+ + +    +  +    +    T+HD+++    +  +       E++
Sbjct: 409 PIATQRLRRNGTLIDVMVTASPVRDADGQVVGAASTLHDMTDELIARKSMLELNASLEEQ 468

Query: 582 SSHKSDFLA 590
              ++  LA
Sbjct: 469 VKERTARLA 477



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/226 (10%), Positives = 54/226 (23%), Gaps = 28/226 (12%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN-HIGDLLKRQNTWYGKTT 148
           D HG +   +    +  G  +++ +G  L ++            I   + R  T     T
Sbjct: 353 DLHGRVTSWNRAAAEIFGYASWEAVGKTLSELIVPADRQAEELSILARIGRGETVAPIAT 412

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVD------------------ 190
                   L + + + A P+   + +  G      +H    +                  
Sbjct: 413 QRLRRNGTL-IDVMVTASPVRDADGQVVGAA--STLHDMTDELIARKSMLELNASLEEQV 469

Query: 191 NDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK 250
            +  A     ++    L +   G  S                  R   K    +    + 
Sbjct: 470 KERTARLAASERFLHSLIDALPGLVSYWDTDMRCRYSN------RTYQKWFGRSPEEMNG 523

Query: 251 DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS 296
               +     L    E  +          + +        T+   +
Sbjct: 524 ISRQELMGEELFRLNEPYIQAALRGEPQVMERAVTLPDGKTINTLA 569



 Score = 44.6 bits (104), Expect = 0.063,   Method: Composition-based stats.
 Identities = 24/349 (6%), Positives = 72/349 (20%), Gaps = 49/349 (14%)

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRN----------REFSGFRGFGIV---------- 184
           G T   P+E       +++ A P++ +               G      +          
Sbjct: 267 GLTRTVPLELYGRRWLVEVNATPVFIQAMQLNSPRYVVGLMVGASALVALLLYVSLVSAQ 326

Query: 185 --HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS 242
                 +++   A             ++    +S  +   +IF   S     +  +++  
Sbjct: 327 RRRQALIEDARLAAILDGTSDAIIGKDLHGRVTSWNRAAAEIFGYASWEAVGKTLSELIV 386

Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQE------------DFHTINLNQYTKKQYFG 290
             +  A +  +L         +  ++   +                  +           
Sbjct: 387 PADRQAEELSILARIGRGETVAPIATQRLRRNGTLIDVMVTASPVRDADGQVVGAASTLH 446

Query: 291 TLQNNSKESFEYLS-----HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYA 344
            + +        L             +A     E      +D  P     +       Y+
Sbjct: 447 DMTDELIARKSMLELNASLEEQVKERTARLAASERFLHSLIDALPGLVSYWDTDMRCRYS 506

Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
           N ++         +          L+       N       L                + 
Sbjct: 507 NRTYQKWFGRSPEEM--NGISRQELMGEELFRLNEPYIQAALR---GEPQVME---RAVT 558

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
                ++           +         +  +    +  +  +     +
Sbjct: 559 LPDGKTINTLANFLPVF-EEGVVCGYIVVSTDVTVLKQAEEALVKAKQK 606


>gi|254850977|ref|ZP_05240327.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|21885294|gb|AAL59700.1| putative histidine kinase [Vibrio cholerae]
 gi|254846682|gb|EET25096.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|259156330|gb|ACV96276.1| multi-sensor hybrid histidine kinase [Vibrio cholerae Ind4]
          Length = 1268

 Score =  360 bits (923), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 126/676 (18%), Positives = 238/676 (35%), Gaps = 46/676 (6%)

Query: 164 AALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYD 223
           A        REF G RGFG++ +    N   A   R+  +    +   +  +  +   + 
Sbjct: 96  AYTQARDYKREFPGARGFGLI-IKVEPNQTAAFLDRMAAERPSYNFQIRQLTPHQDSLFV 154

Query: 224 IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY 283
           I   +    +                            LT+  + +   E      L   
Sbjct: 155 ITYIEPEQNNREAVGVDIGSEAMRRKAALDAAFNNDVRLTAPITLVQANERAQQGFLILM 214

Query: 284 TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY 343
              +     Q++ +             L        N    +V       F+        
Sbjct: 215 PVYKTTTVPQDSRQRLEHLFGWSYATILI-------NDVLNSVAGLENDVFLQISDITEQ 267

Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403
               F       + D         ++               +     R+  +    +  +
Sbjct: 268 TPIEFFSQEVKDTYDAALQQKLNLSVFGRQWQLSLTPTNRFINELQLRSGTSLFFEVMAV 327

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ---------- 453
                  + +  +   + +Q   +  +     E    +    ++E +V            
Sbjct: 328 STILAFGVYLLQLMLMRRSQLIRHKQELASIAEQTLLK-ANAELEQQVALRTAEISRVNI 386

Query: 454 -LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH- 511
              SIL +    I   + EGII + N A  KL GY  E++L +              +  
Sbjct: 387 LQRSILSSAGYAIIATDEEGIITAFNPAAEKLLGYRAEEVLFQQTPSIFHLPAEVEHHAA 446

Query: 512 -------------YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----Y 554
                        + T +    L QT        TK  + + +++ +  L         +
Sbjct: 447 KLTTELGSNIAVGFETLVAKARLGQTDNARWTYLTKTGEQVQVKLNVSALKDEQGQLAGF 506

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                D+++  + + +L+ AK+ AE  +  KS+FLA +SHEIRTP+  ++G  +++ N  
Sbjct: 507 LSIAFDLTKQLKYEAELAQAKEQAESANKAKSEFLANMSHEIRTPMNGVLGLLQLVANST 566

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                + R  +Y      +   +L ++ND+LD SKIE+GK+ L   P SL + + +   +
Sbjct: 567 L----DQRQADYIEKAYSAAKSLLTLLNDILDFSKIEAGKLELDPHPFSLTDLMQDIGLV 622

Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHT 732
               A +K + +      ++P  +L D   +KQ+ +N++ NAI FT  G   I I +   
Sbjct: 623 FSSSAEQKGLEVLYDVTADVPEHLLGDSFRIKQVLINLVGNAIKFTDKGEILISIRSQSL 682

Query: 733 SNEEV--ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
              E+     ++DTG+G+T  +       F Q  +S   R  GTGLGL ++K +V+   G
Sbjct: 683 PEGEINLSFSIKDTGIGITLEQQNALFSGFQQADSSISRRYGGTGLGLAISKRLVNLMGG 742

Query: 791 KFYIFSTPAKGTLIEI 806
           +  + S    G+    
Sbjct: 743 EIGVESEFGCGSTFSF 758



 Score = 43.5 bits (101), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/152 (10%), Positives = 39/152 (25%), Gaps = 17/152 (11%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMI--------------GMRLCDVSDILHIDPNNHIG 134
            D  G +   +    K +G  A +++                    ++  L  +      
Sbjct: 402 TDEEGIITAFNPAAEKLLGYRAEEVLFQQTPSIFHLPAEVEHHAAKLTTELGSNIAVGFE 461

Query: 135 DLLKRQNTWYGKTTLW-PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193
            L+ +          W  +  T   V + L    +     + +GF    I          
Sbjct: 462 TLVAKARLGQTDNARWTYLTKTGEQVQVKLNVSALKDEQGQLAGF--LSIAFDLTKQLKY 519

Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF 225
            A   +  ++    ++ K    +    +    
Sbjct: 520 EAELAQAKEQAESANKAKSEFLANMSHEIRTP 551


>gi|298675067|ref|YP_003726817.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalobium
            evestigatum Z-7303]
 gi|298288055|gb|ADI74021.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalobium
            evestigatum Z-7303]
          Length = 1104

 Score =  360 bits (923), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 108/532 (20%), Positives = 212/532 (39%), Gaps = 25/532 (4%)

Query: 295  NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV-----YSHGNLFYANPSFL 349
              +     LS     +     ++      +   +               G   Y +PS  
Sbjct: 576  EYEGKPAILSIARDITERKKIEKALKENEKLYRRITNNMLDLVSQTDEKGVFEYVSPSHE 635

Query: 350  LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
             +  YK    +        +    +    +     +  +   T        H  Q     
Sbjct: 636  YILGYKPH-YLVGKNVFDFVHPEDRNKLKHLFYKCINNQKSATV------EHRYQHADGY 688

Query: 410  SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469
             L +  +     ++   ++          + +  +  ++    +  +I E T    AI +
Sbjct: 689  YLWLETVGNVVYDEDENDVKAIFGTRNVTERKKTEIALKESEKRYRTIFETTGSATAIAD 748

Query: 470  REGIILSTNRAVSKLFGYPVEDILRK-PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528
                 L  NR   KL GY  E+I ++  +T F+ +     +     ++L+       +  
Sbjct: 749  ENSTFLLVNREFEKLSGYSKEEIEKRKNWTDFIVEEDLPYLRENYYKLLANSTSVPRKYE 808

Query: 529  TLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA-------KKIAEKE 581
                 +      + + +  +P       T+ DI+E KQ +  L           +   + 
Sbjct: 809  FRFIDRNNNQKYISMAVNSIPERKIAIATLLDITERKQSEETLRIYSEKLSKTNEELREL 868

Query: 582  SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
               K +F++ +SHE+RTP+T+I GFSE+I N++ G L N +  E  + I +S + +  ++
Sbjct: 869  DKMKDEFISNLSHELRTPITSIKGFSELIYNEKLGTL-NEKQKEGMDSIVKSCDRLRWLI 927

Query: 642  NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701
              LL ++K+++ K+   FEPV ++  +   +S + L   EK I I      N+P +  D 
Sbjct: 928  ESLLYVNKLQTEKIQYKFEPVDVETLIDGVVSNLSLQIKEKEISIEKYVDENLPYVNGDK 987

Query: 702  RSVKQIALNILSNAIHFTPSGGQIIIS----TTHTSNEEVILRVRDTGVGMTNYELEKAM 757
              ++Q+ ++++ NA  FT SGG+I I        + +  V + V+D G+G+    +    
Sbjct: 988  DYLRQVLVHLMDNARKFTSSGGKIQIHAFNDADKSMDNFVHIIVKDNGIGIKKESIPDIF 1047

Query: 758  KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            K F QI  S   + EGTGLG+ L   +++ + G  ++ S    GT + +  P
Sbjct: 1048 KLFYQIDGSMTRKYEGTGLGMYLCNKIIETHNGYIWVDSEENAGTDVHVKLP 1099



 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 59/554 (10%), Positives = 147/554 (26%), Gaps = 76/554 (13%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D +  +  ++ +  + +G    K++G  + D+    + +    +   L  +     +  
Sbjct: 194 LDCNQNITLVNNKGCEILGYNKDKIVGSNIFDIIPERYKNDIKSVSGKLLNEGIQTAQRF 253

Query: 149 LWPI-EGTNLYVPIDLAALPIYSRNREFSGFRGFG------------------IVHVNR- 188
             PI  GT     I      +  +N   +G    G                  ++   R 
Sbjct: 254 ENPILTGTGEERIISWHNTVLKDQNGNITGTLSSGIDITERKLAEEKQDYLNQVLRAIRN 313

Query: 189 ------VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDI---------FSQQSPPPH 233
                  +ND   L ++  +             ++  E                +     
Sbjct: 314 VNQLITHENDRFQLIQKSCELLVETRGYHNAWIALMDENGGGGFNNIVQAGMGAEFAYIK 373

Query: 234 LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE----QEDFHTINLNQYTKKQYF 289
            ++K+         A         K P+       LP+          +  N  T     
Sbjct: 374 DKLKDGGLIDCVQKALNQSDTIVVKNPVSACVNCPLPDVHKGNNLTRKLEYNNRTYGILS 433

Query: 290 GTLQNNSKESFEYLSHRNHPSLSAY------------------FDEGENLTPETVDKCPI 331
            T+ +   +  + L   +  +                        +      +  +    
Sbjct: 434 VTVPSEYGKDNDELDLFDELTNDLSYALYNLEIEDEKIKAYNKVQQSLKQYQDIFNGMND 493

Query: 332 PFFVYS-HGNLFYANPSFLLLTKYKSVDDIE-IAGGLSTLLDAPKLSDNNAIKPVMLYRS 389
             FV+   GN    N   +    Y   + +     G+         +    IK  +    
Sbjct: 494 AAFVHDLEGNFLDVNDVAVQRLGYSREELLAMGPKGID------DETSKIKIKNRINSIL 547

Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449
           D    A  A    +    +           +    P       I  +  + +  ++ ++ 
Sbjct: 548 DDGYFAFEA--SHVTKTGKKIPVAINSSLVEYEGKP---AILSIARDITERKKIEKALKE 602

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
                  I     D ++  + +G+    + +   + GY    ++ K    F+     + +
Sbjct: 603 NEKLYRRITNNMLDLVSQTDEKGVFEYVSPSHEYILGYKPHYLVGKNVFDFVHPEDRNKL 662

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI--IIKKLPFSSCYSLTM--HDISEWK 565
            H   + ++     T+E        +   L L     +      +         +++E K
Sbjct: 663 KHLFYKCINNQKSATVEH--RYQHADGYYLWLETVGNVVYDEDENDVKAIFGTRNVTERK 720

Query: 566 QEKNKLSHAKKIAE 579
           + +  L  ++K   
Sbjct: 721 KTEIALKESEKRYR 734



 Score = 77.4 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 33/287 (11%), Positives = 85/287 (29%), Gaps = 18/287 (6%)

Query: 322 TPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVD-------DIEIAGGLSTLLDAP 373
                D  P    + +    +   N +          +       +I        +    
Sbjct: 40  FDTIFDAIPDVIGIQNTDHEIICYNKAGYKFLNVSPEEVKGKKCFEIIGRQSPCDICATK 99

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
            +        V  Y      +    R + +Q        +     +   +          
Sbjct: 100 NVYKTKQPSQVQKYIESMG-VWLDVRAYPVQDENGELTQIIEHLRDITTEKEMEKELEKS 158

Query: 434 EPEDVDTRINK-RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
             E       +  +++ E   +   L+ +   I  ++    I   N    ++ GY  + I
Sbjct: 159 HIELEKRIEERTEQLKQEKDLMKKYLDVSGTIILALDCNQNITLVNNKGCEILGYNKDKI 218

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLR--QTLEKITLGSTKEEKLLSLRIIIKKLPF 550
           +       + +   + +     ++L+  ++  Q  E   L  T EE+++S    + K   
Sbjct: 219 VGSNIFDIIPERYKNDIKSVSGKLLNEGIQTAQRFENPILTGTGEERIISWHNTVLKDQN 278

Query: 551 SS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
            +      +  DI+E K  + K  +  ++  +   + +     ++HE
Sbjct: 279 GNITGTLSSGIDITERKLAEEKQDYLNQVL-RAIRNVNQL---ITHE 321



 Score = 76.2 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 71/199 (35%), Gaps = 23/199 (11%)

Query: 422 NQFPENMPQNGIEPEDVDTRINK-RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
           ++   ++       E  D +I    K++  + Q   I    +D   + + EG  L  N  
Sbjct: 451 DELTNDLSYALYNLEIEDEKIKAYNKVQQSLKQYQDIFNGMNDAAFVHDLEGNFLDVNDV 510

Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
             +  GY  E++L        ++ +   + + +  IL               TK  K + 
Sbjct: 511 AVQRLGYSREELLAMGPKGIDDETSKIKIKNRINSILDDG---YFAFEASHVTKTGKKIP 567

Query: 541 LRI--IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV------ 592
           + I   + +            DI+E K+ +  L   +K+  + +++  D +++       
Sbjct: 568 VAINSSLVEYEGKPAILSIARDITERKKIEKALKENEKLYRRITNNMLDLVSQTDEKGVF 627

Query: 593 -----SHEIRTPLTAIIGF 606
                SHE       I+G+
Sbjct: 628 EYVSPSHEY------ILGY 640



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/376 (9%), Positives = 94/376 (25%), Gaps = 27/376 (7%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKRQNTWYGKTT 148
           D  G   ++++   + +G    +++ M    +  +   I   N I  +L     +  + +
Sbjct: 499 DLEGNFLDVNDVAVQRLGYSREELLAMGPKGIDDETSKIKIKNRINSILDDG-YFAFEAS 557

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF-GIVHVNRVDNDPRALGKRLDKKFSHL 207
                G    +P+ + +  +     E+ G      I              K  +K +  +
Sbjct: 558 HVTKTG--KKIPVAINSSLV-----EYEGKPAILSIARDITERKKIEKALKENEKLYRRI 610

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPP---HLRMKNKVSSLTEYYAHKDDV-LKTEKYPLLT 263
                   S   EK                +    V      + H +D       +    
Sbjct: 611 TNNMLDLVSQTDEKGVFEYVSPSHEYILGYKPHYLVGKNVFDFVHPEDRNKLKHLFYKCI 670

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK----ESFEYLSHRNHPSLSAYFDEGE 319
           + + S   +  +   +      +     + +  +      F   +            E E
Sbjct: 671 NNQKSATVEHRYQHADGYYLWLETVGNVVYDEDENDVKAIFGTRNVTERKKTEIALKESE 730

Query: 320 NLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
                  +       +          N  F  L+ Y   +  +        +    L   
Sbjct: 731 KRYRTIFETTGSATAIADENSTFLLVNREFEKLSGYSKEEIEKRKNWTD-FIVEEDLPYL 789

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
                 +L  S         R    + N +  ++M      +               +  
Sbjct: 790 RENYYKLLANSTSVPRKYEFR-FIDRNNNQKYISMAVNSIPERKIA------IATLLDIT 842

Query: 439 DTRINKRKMEIEVMQL 454
           + + ++  + I   +L
Sbjct: 843 ERKQSEETLRIYSEKL 858



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/243 (13%), Positives = 76/243 (31%), Gaps = 12/243 (4%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL-LKRQNTWYGK 146
             D  G  + +S      +G     ++G  + D       +   H+    +  Q +   +
Sbjct: 620 QTDEKGVFEYVSPSHEYILGYKPHYLVGKNVFDFVHPEDRNKLKHLFYKCINNQKSATVE 679

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                 +G   Y+ ++     +Y  +        FG               K  +K++  
Sbjct: 680 HRYQHADG--YYLWLETVGNVVYDEDENDVKAI-FGT-RNVTERKKTEIALKESEKRYRT 735

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL-----TEYYAHKDDVLKTEKYPL 261
           + E     +++  E             L   +K         T++   +D     E Y  
Sbjct: 736 IFETTGSATAIADENSTFLLVNREFEKLSGYSKEEIEKRKNWTDFIVEEDLPYLRENYYK 795

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
           L +  +S+P + +F  I+  +   ++Y     N+  E    ++     +     +E   +
Sbjct: 796 LLANSTSVPRKYEFRFID--RNNNQKYISMAVNSIPERKIAIATLLDITERKQSEETLRI 853

Query: 322 TPE 324
             E
Sbjct: 854 YSE 856


>gi|117926443|ref|YP_867060.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117610199|gb|ABK45654.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1245

 Score =  360 bits (923), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 123/662 (18%), Positives = 237/662 (35%), Gaps = 49/662 (7%)

Query: 179 RGFGIVHVNRVDNDPRALGKRLDKK--FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM 236
           R  G V       +     + L ++  F      +    S       I         + +
Sbjct: 9   RMVGTVQDITEQKEADQALRSLLREVNFQKYALDQHAIVSATDAAGRIIYANEKF--VSI 66

Query: 237 KNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHT------INLNQYTKKQYFG 290
                       H+                 ++ + E +H            Y  +    
Sbjct: 67  SGYERDELLGQNHRILKSTEHPPAFYQEMWRTIQKGETWHGEVKNNKKQGGYYWVRATIV 126

Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDE-------GENLTPETVDKCPIPFFVYSHGNLFY 343
              ++  +  +Y+S R   +     +          N     +D+  I       G + Y
Sbjct: 127 PFMDDKGKPEQYVSIRTDITEQKESERKLISLLHEVNFQKHALDQHAIVSITDRDGFITY 186

Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403
            N  F L+T Y  ++ +         L    + D+   + +    S              
Sbjct: 187 INEPFSLITGYSELEIVGGK----HRLLHSGVHDHAFYRDLWGTISSGKAWKGELCNRA- 241

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEAT 461
                    ++       N+  +      I+ +    R  +R++E    +  +   L  +
Sbjct: 242 --KNGKLFWVSTAIVPFMNEAGQVERYISIQTDITQRREIERELENNNYLSDMALRLSNS 299

Query: 462 SDGIAIINREGIILSTNRAVSKL-------FGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
                ++  EG  +S+ R    +       F Y ++D                V  ++  
Sbjct: 300 GYWHLLLEDEGYYISSERKALIMGDPPHPGFRYHIQDDWLANIRKTDPAMAEQVFANFTQ 359

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNK 570
            I +                + + + L          +           DI+  +  + +
Sbjct: 360 SIATGQDIHFSYPYV--RPVDGRTIWLETAGYVERDETGKPYRVYGVTQDITTRRAAERE 417

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           +  AK+IAE+ +  KSDFLA +SHEIRTP+ AIIG S +            +  +Y N I
Sbjct: 418 ILRAKEIAEEATQAKSDFLANMSHEIRTPMNAIIGMSYLALQTELSR----KQQDYINKI 473

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
             + N +L I+ND+LD SKIE+GK+++   P  L + +    +L+ + A EK + +  + 
Sbjct: 474 HNAANALLGIINDILDFSKIEAGKLDMENLPFLLSDTLESLTNLIAVKAREKGLELLIAM 533

Query: 691 ANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTG 745
              +P  ++ D   + QI +N+++NA+ FT +G +I++        +    +   + D+G
Sbjct: 534 DPAVPDGLIGDDLRLGQILVNLVNNAVKFTDTG-EIVVRVKQVEANDREVMLQFSISDSG 592

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +GMT  ++ K    F Q   S   +  GTGLGL ++K + +   GK ++ STP  G+   
Sbjct: 593 IGMTEAQVAKLFNSFSQADASTTRKYGGTGLGLTISKKLTEMMHGKIWVESTPGVGSTFL 652

Query: 806 II 807
             
Sbjct: 653 FT 654



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/381 (8%), Positives = 95/381 (24%), Gaps = 24/381 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147
            DA G +   +E+     G    +++G     +    H       +   +++  TW+G+ 
Sbjct: 50  TDAAGRIIYANEKFVSISGYERDELLGQNHRILKSTEHPPAFYQEMWRTIQKGETWHGEV 109

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                +G   Y  +    +P      +   +    I        +       L  + +  
Sbjct: 110 KNNKKQGG--YYWVRATIVPFMDDKGKPEQY--VSIRTDITEQKESERKLISLLHEVNFQ 165

Query: 208 HEIKKGHS--SVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL---- 261
                 H+  S+      I     P   +   +++  +   +      +    +      
Sbjct: 166 KHALDQHAIVSITDRDGFITYINEPFSLITGYSELEIVGGKHRLLHSGVHDHAFYRDLWG 225

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN- 320
             S   +   +      N   +          N + +   Y+S +   +     +     
Sbjct: 226 TISSGKAWKGELCNRAKNGKLFWVSTAIVPFMNEAGQVERYISIQTDITQRREIERELEN 285

Query: 321 ---LTPETVDKCPIP---FFVYSHGNLFYANPSFLLLTKYKSVDDIE---IAGGLSTLLD 371
              L+   +           +   G    +    L +                 L+ +  
Sbjct: 286 NNYLSDMALRLSNSGYWHLLLEDEGYYISSERKAL-IMGDPPHPGFRYHIQDDWLANIRK 344

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
                            +    I        ++     ++ +    + + ++  +     
Sbjct: 345 TDPAMAEQVFANFTQSIATGQDIHF--SYPYVRPVDGRTIWLETAGYVERDETGKPYRVY 402

Query: 432 GIEPEDVDTRINKRKMEIEVM 452
           G+  +    R  +R++     
Sbjct: 403 GVTQDITTRRAAEREILRAKE 423


>gi|196230968|ref|ZP_03129828.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
 gi|196224798|gb|EDY19308.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
          Length = 977

 Score =  360 bits (923), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 96/404 (23%), Positives = 180/404 (44%), Gaps = 12/404 (2%)

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
           +      +  +     + +    +++    +   +  +   GI   +  G+ L  N    
Sbjct: 180 RSNTEQLEQIVNVRTQELQAAHHELQASEQRYRQLSSSAPIGIFESDAGGLCLYVNPHWQ 239

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
           K+ G  +++ +   +   +     + +       +    +   E        + + +  R
Sbjct: 240 KIAGLSLDEAIGTGWHQIMHPEDDARVRREWENAVVAGRQFNSEHRYRRPDGDVRWIHAR 299

Query: 543 IIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
            ++ +        +  T+ DI+E K  + +LS A   A + +  KS FLA +SHEIRTP+
Sbjct: 300 SVVIRSETGEVIGHVGTVEDITERKYVEAQLSKACDAALESARLKSRFLANMSHEIRTPM 359

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
             +IG + ++ +       N    ++A  I  S   +L ++ND+LD SKIE+GKM     
Sbjct: 360 NGVIGMTNLLLDTSL----NNEQRDFAETIRASAEGLLTVINDILDFSKIEAGKMTFEDL 415

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFT 719
             +L + V   + L+   A+ K I +      N+P R+  D   ++Q+  N++SNAI FT
Sbjct: 416 DFNLHDVVESTLELLAKQAHTKGIELAGFIEPNVPTRLRGDAGRIRQVLTNLVSNAIKFT 475

Query: 720 PSGGQIIISTTHTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
            +G ++ I T+   ++    ++ L+V DTGVG++    +   + F Q   S   R  GTG
Sbjct: 476 QTG-EVTIRTSCLDDQGSQCQLRLQVSDTGVGISPEAQKNLFEAFNQADASTTRRFGGTG 534

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819
           LGL + K +V+   G   + STP KG++      L     P + 
Sbjct: 535 LGLAICKQLVEKMHGCIGLESTPGKGSIFWFTLLLSKQDVPPEI 578



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/261 (11%), Positives = 64/261 (24%), Gaps = 21/261 (8%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD-LLKRQNTWY 144
            +  DA G    ++    K  G    + IG     +             +  +     + 
Sbjct: 222 IFESDAGGLCLYVNPHWQKIAGLSLDEAIGTGWHQIMHPEDDARVRREWENAVVAGRQFN 281

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            +      +G      I   ++ I S   E  G    G V          A   +     
Sbjct: 282 SEHRYRRPDGD--VRWIHARSVVIRSETGEVIGH--VGTVEDITERKYVEAQLSKACDAA 337

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
                +K    +    +          P   +    + L +   + +     E       
Sbjct: 338 LESARLKSRFLANMSHEIR-------TPMNGVIGMTNLLLDTSLNNEQRDFAETIRASAE 390

Query: 265 EESS-LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
              + + +  DF  I   + T +     L +  + + E L+ + H          E   P
Sbjct: 391 GLLTVINDILDFSKIEAGKMTFEDLDFNLHDVVESTLELLAKQAHTKGIELAGFIEPNVP 450

Query: 324 ETVDKCPIPFFVYSHGNLFYA 344
             +            G +   
Sbjct: 451 TRLRG--------DAGRIRQV 463


>gi|322419614|ref|YP_004198837.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
 gi|320126001|gb|ADW13561.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
          Length = 1264

 Score =  359 bits (922), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 106/777 (13%), Positives = 241/777 (31%), Gaps = 79/777 (10%)

Query: 82   TVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQ 140
             +   +   A G     ++      G     ++G  + +V+     + +     +L+ + 
Sbjct: 379  PIPVFYK-GADGRYLGCNQAFLNFTGFTREGLVGKTVSEVTPSPLAEAHHRADLELIAKG 437

Query: 141  NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
                 +T     +G      +        + N    G  G  ++H         +  +  
Sbjct: 438  GVQIYETKAL--QGDQTLRDVVFFKTSFTTMNGSCGGVLG--VMHDITERKLAESALQSQ 493

Query: 201  DKKFSHLHEIKKGHSSVEKEKYDIFSQQSP--------PPHLRMKNKVSS--LTEYYAHK 250
             +    L       + V   ++ +               P +   +++            
Sbjct: 494  KEFAESLVLNMTIPTFVLDAQHRVIIWNHALEALTGIKAPDVLGTDQLWRIFYESERPLL 553

Query: 251  DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY-------------FGTLQNNSK 297
             D++  +    + S  S+     +   I      +  Y                +++   
Sbjct: 554  ADMVLNQNAGDVASNYSNYSSCRNSPLIKGGIQAEGWYKDPHGYGHYISISAAPIRDRQG 613

Query: 298  ESFEYLSHRNHPSLSAYFDEG----ENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLT 352
                 +      +      +            +D        V   G + + NP+   + 
Sbjct: 614  GLVGAIQSLEDITERKQAQDAHEKTRRQLQLILDAAGEGINGVDMQGRITFVNPAAAQMV 673

Query: 353  KYKSVDDIEI-AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411
             +   + +      L                P+ L   +   +  +  L   + +  +  
Sbjct: 674  GWTQEELLGQHQHSLMHHTREDGTGFPEQECPMALACYEGRPLQGNEELF-WRKDGSSFH 732

Query: 412  AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471
                    + +   E +    I  +  + R  + ++     +L   +  +   I I + +
Sbjct: 733  VEYNCSPIRED--GELVGAVVIYKDVTERRQAEDQLL----KLSQAVMQSPVAIMITDPD 786

Query: 472  GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
            G I   N   +++  Y  E+++ +   +     T   +   + + ++    +        
Sbjct: 787  GNIEFVNPRFTQVTSYTAEEVIGQNPRLLKSGKTSPELYQNMWDTITCG--RVWTGELYN 844

Query: 532  STKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
              K          I  +   S     Y   M  I E K+ + +L  A+K+          
Sbjct: 845  RDKSGTTFWQHATISPIRNGSGVISHYMAFMESIGERKKLEEQLRQAQKM-----EAIGQ 899

Query: 588  FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
                V+H+    LT I+GF +++++       +    ++   I  +G+    +   LL  
Sbjct: 900  LAGGVAHDFNNILTVILGFGQMLQHSL---PPDDPLRDHMEQILDAGDRATHLTRSLLAF 956

Query: 648  SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707
            S+    K  +  + V L+E        + +    + + ++ SF+     ++AD   ++Q+
Sbjct: 957  SR----KQVMVMQQVELNELTRRHAKFL-VRIIGEDVSLKASFSKEPLLVMADSGQLEQV 1011

Query: 708  ALNILSNAIHFTPSGGQIIISTTHT--------------SNEEVILRVRDTGVGMTNYEL 753
             +N+ +NA    P GG++ I T                      ++ V DTG GM     
Sbjct: 1012 LMNLATNARDAMPGGGELTIKTESVTLDKEFHRQYGYGMPGRYALVTVTDTGTGMDAETQ 1071

Query: 754  EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            +K  +PF          G GTGLGL +   ++  + G   IFS    GT   I  PL
Sbjct: 1072 QKIFEPFFTTKLP----GRGTGLGLSIVYGIIKQHGGYITIFSQRGFGTTFSIYLPL 1124



 Score =  141 bits (356), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 47/449 (10%), Positives = 114/449 (25%), Gaps = 30/449 (6%)

Query: 162 DLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEK 221
           +    PI        G  G     + +  +  R   KR  +    L E+       +   
Sbjct: 329 EANTTPISVDAGGEIGVLGDAFNQLLKDLDQQRNELKRQLEFSEKLIEVTPIPVFYKGAD 388

Query: 222 YDIFSQQSPP--PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTIN 279
                            +  +   T        + +      L        +  +   + 
Sbjct: 389 GRYLGCNQAFLNFTGFTREGLVGKTVSEVTPSPLAEAHHRADLELIAKGGVQIYETKALQ 448

Query: 280 LNQYTKKQYF-----GTLQNN-SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF 333
            +Q  +   F      T+  +                  +     +      V    IP 
Sbjct: 449 GDQTLRDVVFFKTSFTTMNGSCGGVLGVMHDITERKLAESALQSQKEFAESLVLNMTIPT 508

Query: 334 FVYSH-GNLFYANPSFLLLTKYKSVDDIE-----------IAGGLSTLLDAPKLSDNNAI 381
           FV      +   N +   LT  K+ D +                L+ ++      D  + 
Sbjct: 509 FVLDAQHRVIIWNHALEALTGIKAPDVLGTDQLWRIFYESERPLLADMVLNQNAGDVASN 568

Query: 382 KPVMLYRSDRTCIAASARLHTIQWN-RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
                   +   I    +      +       ++       ++    +       +  + 
Sbjct: 569 YSNYSSCRNSPLIKGGIQAEGWYKDPHGYGHYISISAAPIRDRQGGLVGAIQSLEDITER 628

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +  +   E    QL  IL+A  +GI  ++ +G I   N A +++ G+  E++L +     
Sbjct: 629 KQAQDAHEKTRRQLQLILDAAGEGINGVDMQGRITFVNPAAAQMVGWTQEELLGQHQHSL 688

Query: 501 LEQNTP-----SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--- 552
           +                +             +      K+     +      +       
Sbjct: 689 MHHTREDGTGFPEQECPMALACYEGRPLQGNEELFWR-KDGSSFHVEYNCSPIREDGELV 747

Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKE 581
              +   D++E +Q +++L    +   + 
Sbjct: 748 GAVVIYKDVTERRQAEDQLLKLSQAVMQS 776


>gi|321312444|ref|YP_004204731.1| two-component sensor histidine kinase [Bacillus subtilis BSn5]
 gi|320018718|gb|ADV93704.1| two-component sensor histidine kinase [Bacillus subtilis BSn5]
          Length = 579

 Score =  359 bits (922), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 88/372 (23%), Positives = 170/372 (45%), Gaps = 23/372 (6%)

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
           D     R  E++  +L +++E    G+ +I+  G I   NR+ +K F      +LR+ + 
Sbjct: 221 DLMEMTRTQEMQRDRLLTVIENIGSGLIMIDGRGFINLVNRSYAKQFHINPNHMLRRLYH 280

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSL 556
              E      +   + +I   + ++           E +   +  +    P        L
Sbjct: 281 DAFEHE---EVIQLVEDIFMTETKKCKLLRLPIKI-ERRYFEVDGVPIMGPDDEWKGIVL 336

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
             HD++E K+ +                + DF+A VSHE++TP+T+I GF+E + +    
Sbjct: 337 VFHDMTETKKLE--------------QMRKDFVANVSHELKTPITSIKGFTETLLDGAM- 381

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
                   E+ + I +    +  +V DLLD+SKIE     L  E     + + E  +L++
Sbjct: 382 -EDKEALSEFLSIILKESERLQSLVQDLLDLSKIEQQNFTLSIETFEPAKMLGEIETLLK 440

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
             A+EK I +  +   +   +  D   +KQ+ LN+++NA+ +TP GG + I+      + 
Sbjct: 441 HKADEKGISLHLNVPKDPQYVSGDPYRLKQVFLNLVNNALTYTPEGGSVAINVKPREKD- 499

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           + + V D+G+G+   E+ +  + F ++   +     GTGLGL + K +++A+ GK  + S
Sbjct: 500 IQIEVADSGIGIQKEEIPRIFERFYRVDKDRSRNSGGTGLGLAIVKHLIEAHEGKIDVTS 559

Query: 797 TPAKGTLIEIIF 808
              +GT+  +  
Sbjct: 560 ELGRGTVFTVTL 571


>gi|117925117|ref|YP_865734.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117608873|gb|ABK44328.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 780

 Score =  359 bits (922), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 89/377 (23%), Positives = 178/377 (47%), Gaps = 14/377 (3%)

Query: 445 RKMEIEVMQLCSILEATSD--GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
           + +     +   ++E+ S    +   N EG+    + ++  + GY  ++ +    T F E
Sbjct: 259 QALRQSEEKFRRLVESLSSEYFLYSHNTEGVFEYVSPSIRTVLGYDPQEFMTHYATYFTE 318

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS----LTM 558
                   ++    +  + + +         K+ + + L ++   +              
Sbjct: 319 NPINMQAVNHTEASIRGEQQASYVIEIFN--KQGQAVRLDVLEYPIFDKDGRVIAVEGLA 376

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
           HD++E  + + +L  AK+ AE  +  KS+FLA +SHEIRTP+ +I+G +E++      P 
Sbjct: 377 HDVTERHRAEFELLTAKEQAEAANRTKSEFLAMMSHEIRTPMNSILGMAELLSESPLTP- 435

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
                  Y     R+G+ +L+++ND+LD+SK+E+G++ L+ +P +L E +   + L++  
Sbjct: 436 ---EQQGYLKIQRRAGHGLLELINDILDLSKLEAGRIELYIQPFNLPELLQSVVDLLENL 492

Query: 679 ANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEE 736
           A E+ + +R      IP +   D   ++QI +N++ NAI FT  G  +I +  +      
Sbjct: 493 ARERGLALRLERMEEIPTLCQGDRARLRQIMVNLVGNAIKFTHDGSVKISVEKSSDDATN 552

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           ++  V D+G+G+   +     + F QI +S      G+GLGL +   +V+   GK ++ S
Sbjct: 553 LLFHVIDSGIGIAEKDQSSVFQRFTQIDSSNSRFYGGSGLGLAITHHLVELMGGKIWLKS 612

Query: 797 TPAKGTLIEIIFPLYDT 813
              +G+      PL   
Sbjct: 613 ALGEGSCFTFTLPLPPV 629



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/290 (9%), Positives = 78/290 (26%), Gaps = 11/290 (3%)

Query: 47  DSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVR-FTWNIDAHGYLKEISEELPKT 105
           +  EQ     Q   + SN     SE  F       +   F ++ +  G  + +S  +   
Sbjct: 241 EQEEQQLRLIQQSLTQSNQALRQSEEKFRRLVESLSSEYFLYSHNTEGVFEYVSPSIRTV 300

Query: 106 IGNYAFKMIGMRLCDVSD-ILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLA 164
           +G    + +       ++  +++   NH    ++ +        ++  +G  + + +   
Sbjct: 301 LGYDPQEFMTHYATYFTENPINMQAVNHTEASIRGEQQASYVIEIFNKQGQAVRLDVL-- 358

Query: 165 ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDI 224
             PI+ ++       G  + H     +          ++    +  K    ++   +   
Sbjct: 359 EYPIFDKDGRVIAVEG--LAHDVTERHRAEFELLTAKEQAEAANRTKSEFLAMMSHEIRT 416

Query: 225 FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFH-----TIN 279
                      +     +  +    K           L ++   L + E           
Sbjct: 417 PMNSILGMAELLSESPLTPEQQGYLKIQRRAGHGLLELINDILDLSKLEAGRIELYIQPF 476

Query: 280 LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
                 +     L+N ++E    L       +            + +   
Sbjct: 477 NLPELLQSVVDLLENLARERGLALRLERMEEIPTLCQGDRARLRQIMVNL 526


>gi|326424323|ref|NP_762902.2| CheY-like receiver [Vibrio vulnificus CMCP6]
 gi|319999709|gb|AAO07892.2| FOG: CheY-like receiver [Vibrio vulnificus CMCP6]
          Length = 1328

 Score =  359 bits (922), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 105/506 (20%), Positives = 201/506 (39%), Gaps = 30/506 (5%)

Query: 325 TVDKCPI---PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
            + + P+      +Y    L     +    T   S +  + +    ++L + K     ++
Sbjct: 333 LLHQFPVQQVSIAIYRDDKLIRIAGAGYDDT--ISREISDQSSTQLSVLLSDKPYSMKSL 390

Query: 382 KPVMLYRSDRTCIAA-SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI------- 433
           +       +   +         +  N++    +     +             +       
Sbjct: 391 QGKYTTHVNGGVLELNEIYYFPLCVNKQPVALLELGTVDTLTPLQYQWLSQMLDDLSVSI 450

Query: 434 --EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
                    R  ++K+  +      IL AT + +  ++ +G  L+ N   S+L G  + +
Sbjct: 451 QLSQNVELQRKAEQKVLEQSQLNQEILNATPNPMYCLSAQGKYLTVNAKFSELTGLAMHE 510

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
           I+ +       Q   S     + + LS + + +          +     + +       S
Sbjct: 511 IVGRTPIEVFSQQDASHHFTQVHQELSQE-QCSKNYELSLLDSQGGCRDMLVCEASFNNS 569

Query: 552 SC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
                     + D++E KQ +++L  AK  A+  S  K DFLA +SHEIRTP+ AI+G +
Sbjct: 570 QGRVSGIVGILLDLTERKQMESELRDAKDTADAMSRAKGDFLANMSHEIRTPMNAILGMA 629

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
            +  N       +P   +Y   I+ S   +L I+ND+LD SKIE+GK+++     SLDE 
Sbjct: 630 HLALNTEL----DPSQRKYLTRINESAKNLLGIINDILDFSKIEAGKLSVESIDFSLDEV 685

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII 726
                +++   A EK I         +P  ++ D   + Q+ +N+  NA+ FT  G +I+
Sbjct: 686 FENLTNVISFKAQEKGIEFLLDIDPRVPVGLVGDPLRLGQVLVNLCGNAVKFTEKG-EIL 744

Query: 727 IST----THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
           +S       + +  +   V+DTG+G+   ++      F Q   S      GTGLGL ++K
Sbjct: 745 VSVMPESQSSDDVTLRFSVKDTGIGIDKEKIADLFNAFSQADTSITREFGGTGLGLSISK 804

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIF 808
            +V+   G+  + S    G+      
Sbjct: 805 QLVELMGGQLSVSSAVGMGSTFTFTI 830


>gi|288573392|ref|ZP_06391749.1| multi-sensor hybrid histidine kinase [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288569133|gb|EFC90690.1| multi-sensor hybrid histidine kinase [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 1129

 Score =  359 bits (922), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 106/400 (26%), Positives = 183/400 (45%), Gaps = 10/400 (2%)

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
           +   + NQ         ++ E  D +  +  ++ ++  +  +L+   + +   ++ GIIL
Sbjct: 321 VDEAEKNQTTVKEHNERLKTEIRDRKKAESALQGQLSFMQVLLDTIPNPVYYFDKNGIIL 380

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
             NRA S L G      +       L       +      +L+       +       +E
Sbjct: 381 GCNRAFSSLLGKEGWGTIGTSMVELLPTKAAEKLMDLGERVLNGHEPVRFQLPMDIDGQE 440

Query: 536 EKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
            +    +   +    +S     M D++   Q   +L  AK+ AE+ +  KS FLA +SHE
Sbjct: 441 YRFFFNQAAFRLNENNSGVVGVMEDVTALIQNAVELRKAKEEAERANRAKSAFLANMSHE 500

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           IRTP+ A++G +E+     +    +    EY   I  +   ++DI+ND+LDISKIESG M
Sbjct: 501 IRTPMNAVLGMTELALETTY----DEDQREYLETIHEASCSLMDIINDILDISKIESGHM 556

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSN 714
            +   P  L E   ++ S +   A+ K + +       +    + D   ++QI +N+LSN
Sbjct: 557 EIDSHPFDLGEVAWKSASYLAKEAHGKGLELNVDIDEELAESYIGDSVRIRQIMVNLLSN 616

Query: 715 AIHFTPSGGQIIISTTHTSN----EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           A+ FT  G +I++S          + V +R+ DTG+G++  E+ +   PF Q   S   R
Sbjct: 617 AVKFTDEG-EILMSVKAMEKTAKMDSVEIRIEDTGIGLSEKEIARIFSPFIQADVSTTKR 675

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             GTGLGL + K +V+   GK  + S P KG++     PL
Sbjct: 676 YGGTGLGLSICKKLVEIMGGKLEVQSAPGKGSVFSFTIPL 715



 Score = 40.4 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 31/292 (10%), Positives = 77/292 (26%), Gaps = 19/292 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            +  D +G +   +      +G   +  IG  + ++      +    +G+ +   +    
Sbjct: 370 VYYFDKNGIILGCNRAFSSLLGKEGWGTIGTSMVELLPTKAAEKLMDLGERVLNGHEPVR 429

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
                 I+G       + AA  +   N    G     ++             ++  ++  
Sbjct: 430 FQLPMDIDGQEYRFFFNQAAFRLNENNSGVVG-----VMEDVTALIQNAVELRKAKEEAE 484

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP----- 260
             +  K    +    +            L M       T     ++ +    +       
Sbjct: 485 RANRAKSAFLANMSHEIRTPMNA----VLGMTELALETTYDEDQREYLETIHEASCSLMD 540

Query: 261 -----LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
                L  S+  S   + D H  +L +   K      +    +  E     +     +Y 
Sbjct: 541 IINDILDISKIESGHMEIDSHPFDLGEVAWKSASYLAKEAHGKGLELNVDIDEELAESYI 600

Query: 316 DEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
            +   +    V+           G +  +  +     K  SV+      G+ 
Sbjct: 601 GDSVRIRQIMVNLLSNAVKFTDEGEILMSVKAMEKTAKMDSVEIRIEDTGIG 652


>gi|167625694|ref|YP_001675988.1| PAS/PAC sensor-containing hybrid histidine kinase [Shewanella
           halifaxensis HAW-EB4]
 gi|167355716|gb|ABZ78329.1| PAS/PAC sensor hybrid histidine kinase [Shewanella halifaxensis
           HAW-EB4]
          Length = 1203

 Score =  359 bits (922), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 118/596 (19%), Positives = 206/596 (34%), Gaps = 50/596 (8%)

Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE--DFHTINLNQYTKKQYF 289
           P  R+   +   +       + +     P          E +    H    N+   K   
Sbjct: 350 PASRLLTHLEECSAEPIKPPEKITVGWAPWFQLVSRIFEENKQYTRHLAEQNRRLDKLVA 409

Query: 290 GTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSF 348
              +                  +   ++   L    +D  P    F    G     N S 
Sbjct: 410 QRTERL-------------KDTTERREQEYALLRSLLDSIPEAIVFKDKEGRYLGCNKSA 456

Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
             +  +   + I        L    +     A    +L             L        
Sbjct: 457 ERMLGFSESEMIGQFS--DALAPDEQSLRIRAEDERVLTDRTPLRYQEKVELA------G 508

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA-- 466
             + +  +     N+  E +    +  +      +  ++ +   +    ++A  DG+   
Sbjct: 509 KPVLLDTLKIPFYNRRGELLGLIAVWRDVTREYESAEQLRLSEERYHLAMDAVEDGLWDW 568

Query: 467 IINREGIILSTNRAVSKLFGYPVED--ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
            ++ E II   N A   + GY V +   L       +  +    +  Y  + L+  +   
Sbjct: 569 YLDSEQII--CNPAYYSMLGYKVNEFPALVSTIDELIHPDDRIRVEEYREQYLANPV-GA 625

Query: 525 LEKITLGSTKEEKLLSLR-----IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579
            +       K  +   L      +             T  DI+  K+ +  +  AK+ AE
Sbjct: 626 YDIEFRMLGKNGEYHWLLSRGRVVEFTPKKQPKRMVGTHKDITRHKRNEVAMLEAKQDAE 685

Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639
             + +KS+FLA +SHEIRT + AIIG  ++ +     P    +  +Y      S + +L 
Sbjct: 686 MANLYKSEFLANMSHEIRTRMNAIIGMLQLAQRTSLTP----QQKDYLEKAGFSAHSLLR 741

Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL- 698
           I+ND+LD SKIE+GK+ L      LD+ +  A+ +  L A EK + +          IL 
Sbjct: 742 IINDILDFSKIEAGKLELERIGFPLDKVLDHALDINALKAQEKGVELLLYAPVTAGLILE 801

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE------VILRVRDTGVGMTNYE 752
            D   + Q+ +N+LSNA+ FT SG    I        E      +   VRDTG+G++  +
Sbjct: 802 GDPLRLGQVLINMLSNAVKFTQSG---EIELGCEDVGERDHRITLKFWVRDTGIGISKEQ 858

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
                  F Q   S   +  GTGLGL ++K +V    G   + S    G+      
Sbjct: 859 QATLFDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGTMQVESEMGVGSTFSFTI 914



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 63/224 (28%), Gaps = 16/224 (7%)

Query: 79  IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH--IDPNNHIGDL 136
                   +  D  G     ++   + +G    +MIG    D        +        +
Sbjct: 434 DSIPEAIVFK-DKEGRYLGCNKSAERMLGFSESEMIGQ-FSDALAPDEQSLRIRAEDERV 491

Query: 137 LKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN-RVDNDPRA 195
           L  +     +     +E     V +D   +P Y+R  E  G     +     R       
Sbjct: 492 LTDRTPLRYQE---KVELAGKPVLLDTLKIPFYNRRGELLGL--IAVWRDVTREYESAEQ 546

Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK----NKVSSLTEYYAHKD 251
           L    ++    +  ++ G      +   I    +    L  K      + S  +   H D
Sbjct: 547 LRLSEERYHLAMDAVEDGLWDWYLDSEQIICNPAYYSMLGYKVNEFPALVSTIDELIHPD 606

Query: 252 DVLKTEKYPL--LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293
           D ++ E+Y    L +   +   +      N   +        ++
Sbjct: 607 DRIRVEEYREQYLANPVGAYDIEFRMLGKNGEYHWLLSRGRVVE 650


>gi|71905886|ref|YP_283473.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
 gi|71845507|gb|AAZ45003.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
          Length = 1066

 Score =  359 bits (922), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 99/533 (18%), Positives = 205/533 (38%), Gaps = 43/533 (8%)

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEI 362
                 +      +   +    +++ P+   +   G  + Y NP F  +T Y S   +  
Sbjct: 395 QRLAQEAALRVQADELKVLSRAIEQSPVSIVITDTGGCIRYVNPKFEQVTGYTSQQVLGQ 454

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
                  + +      +  + +                   +    +            +
Sbjct: 455 NP----RILSSGEKSPDEYRELWRTIKSGQTWQGEFHN---RRQDGSLFWERASISPIID 507

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
           +  + +    ++ +  + +  +  + +   ++ +IL++    I I   +      NR V 
Sbjct: 508 EQGQILHFLAVKEDISEHKQIEEALRVSEYKMATILDSVEAYIYIKGTDYCYQYANRRVC 567

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
           +LF   +  I+    T F +  T + +      ++    R    +  +  T + ++ S  
Sbjct: 568 ELFAREMNGIVGHQDTEFFDPATCANLRRNDRRVIEQGERVV--EEEVNRTVDGQITSAF 625

Query: 543 III-KKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAE------------------ 579
           + I   L               DI+  KQ + +L H ++  E                  
Sbjct: 626 LSIKIPLRDQDGQIYALCGISTDITVRKQAEAELEHYRQHLETLVQSRTVELARAKDAAE 685

Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639
             +  KS FLA +SHEIRTP+ AI+G + +++        + R  E    I  S N +L+
Sbjct: 686 AANRAKSSFLANMSHEIRTPMNAIMGLTHLLQKDVL----DSRARERLGKIGESANHLLN 741

Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL- 698
           ++ND+LD+SKIE+G++ L     S +  + + IS++   A  + + + +  A+++P +L 
Sbjct: 742 VINDILDLSKIEAGRLALEIREFSPEAVLRQTISMLDERAAAQGLRLTSHLASDVPALLC 801

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDTGVGMTNYELE 754
            D   + Q  LN + NAI F+  G +I +       +     +   V+D G+GM   +  
Sbjct: 802 GDAVRIGQALLNFVGNAIKFSERG-EIALRARVDRRDGEQVMLRFEVQDQGIGMDAGQQA 860

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           +  + F Q  +S   +  GTGLGL + + +     G   + S    G+   + 
Sbjct: 861 RLFQSFSQADDSTTRKYGGTGLGLAINRHLARMMGGDVGVDSALGVGSTFWMT 913



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 22/247 (8%), Positives = 70/247 (28%), Gaps = 10/247 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL-HIDPNNHIGDLLKRQNTWYGKT 147
            D  G ++ ++ +  +  G  + +++G     +S      D    +   +K   TW G+ 
Sbjct: 427 TDTGGCIRYVNPKFEQVTGYTSQQVLGQNPRILSSGEKSPDEYRELWRTIKSGQTWQGEF 486

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                +G+        +  PI     +   F    +              +  + K + +
Sbjct: 487 HNRRQDGSLF--WERASISPIIDEQGQILHF--LAVKEDISEHKQIEEALRVSEYKMATI 542

Query: 208 HEIKKG--HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK--TEKYPLLT 263
            +  +   +       Y   +++      R  N +    +                  + 
Sbjct: 543 LDSVEAYIYIKGTDYCYQYANRRVCELFAREMNGIVGHQDTEFFDPATCANLRRNDRRVI 602

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFG-TLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
            +   + E+E   T++    +        L++   + +         ++    +      
Sbjct: 603 EQGERVVEEEVNRTVDGQITSAFLSIKIPLRDQDGQIYALCGISTDITVRKQAEAELEHY 662

Query: 323 PETVDKC 329
            + ++  
Sbjct: 663 RQHLETL 669


>gi|188576089|ref|YP_001913018.1| two-component system sensor histidine kinase-response regulator
           hybridprotein [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188520541|gb|ACD58486.1| two-component system sensor histidine kinase-response regulator
           hybridprotein [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 1364

 Score =  359 bits (922), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 125/707 (17%), Positives = 243/707 (34%), Gaps = 65/707 (9%)

Query: 164 AALPIYSRNREFSGFR-----GF----GIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214
           +  PI +      G+R     GF     I         P+               + +  
Sbjct: 185 SGEPIMTSPISLFGYRVPRESGFWLLLAIYREGMPLQTPQQRMVATSGWVYAPFSLAQIV 244

Query: 215 SSVEKEKYDI-FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE 273
            S   E+ DI               +  +     A    V+        T   ++ P   
Sbjct: 245 QSALGERDDIALDMSDRNEPTHNLYRSGTPAIDSALGPPVVTLLPMYGRTWVITAHPTAS 304

Query: 274 DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF 333
              ++N N            +    +   L   N         +   L            
Sbjct: 305 FIASLNQNSPWLIGGLVMAGSVLFAALLVLYFSNGLRREEVLRKQMELAALVSHSSEAIV 364

Query: 334 FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393
                G +   NP+   +  Y + + I+    L+ LL     +                 
Sbjct: 365 AETPDGRITLWNPAAEAMFGYTAEEAIDQ--DLTMLLAPQPYAMPEIDHADA------AL 416

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK------- 446
            A ++   T+     + + +                 +    +  D   + ++       
Sbjct: 417 AANASAAQTMHHRDGHQVHVLASKSPIIESEGTLSGHSHFFRDISDRVRSHQRSIDLNAS 476

Query: 447 MEIEVMQ-----------LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
           +E +V +             +IL      I   +  G +   N A  K+ GY   +++ +
Sbjct: 477 LEHQVAERTGELVKFSVLQRAILAHAGYAIIATDSSGFVTLFNPAAEKMLGYNAAEVIGR 536

Query: 496 PFTVFLEQNTPSVMNH-YLTEILSLDLRQTLEK-------------ITLGSTKEEKLLSL 541
                  +          L +     +  TLE                   + + + L +
Sbjct: 537 RKASQFIEQDELQERARMLADQTGTPVAHTLEAIAALTSLGRSDTSEWTYVSHDGRRLPV 596

Query: 542 RIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
            + +  L         Y     D+ E K ++ +L  A   A+  +  KSDFLA +SHEIR
Sbjct: 597 LLTLSTLRDDHDQVIGYLGVAVDLIEQKLQEKQLRLAMDAAKSANQSKSDFLANMSHEIR 656

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TP+ AI+G   +++             +    IDRS   +L+I+ND+LD SKIE+G+++L
Sbjct: 657 TPMNAILGMLYLLQRSELPGAA----QDMVAKIDRSARTLLEIINDILDFSKIEAGRIDL 712

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTS-FANNIPRILADLRSVKQIALNILSNAI 716
              P  L++       L++   + K + +       +   +L D   + Q+ +N++ NAI
Sbjct: 713 ECAPFDLNQLFDNIAELMRSSLSAKPVEMIVEPLPRDSRWLLGDALRINQVLVNLVGNAI 772

Query: 717 HFTPSGGQIIISTTHTSNEE-----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
            FT  G ++++S     + +     ++  VRDTG+G++  +      PF Q   S   R 
Sbjct: 773 KFTEQG-EVVLSVRRFPSGDPNKFKLLFSVRDTGIGISKEKQSLIFSPFLQADTSTSRRY 831

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
            G+GLGL +++ +++   G+  + S P +G+    +  L  ++ P +
Sbjct: 832 GGSGLGLTISRRLIELMGGELEVESVPGRGSEFYFVITLEKSAPPQE 878



 Score = 85.8 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 48/443 (10%), Positives = 116/443 (26%), Gaps = 47/443 (10%)

Query: 164 AALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYD 223
           +        REF G  G+G +H  RV         +  +        ++  +  + E+Y 
Sbjct: 94  SYSRSRDYPREFPGVLGYGYIH--RVAPADEDAFLQNARADGAPDIQRRPLAPWDGERYI 151

Query: 224 IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY 283
           +   +             +   +             P++TS  S    +    +      
Sbjct: 152 VLYFEPESSGNHPLGIDIASDPHRRAAALQAARSGEPIMTSPISLFGYRVPRESGFWLLL 211

Query: 284 TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY 343
              +    LQ   +           P   A   +                 +        
Sbjct: 212 AIYREGMPLQTPQQRMVATSGWVYAPFSLAQIVQSALGER-------DDIALDMSDR--- 261

Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403
            N     L +            + + L  P ++         +  +  T    ++     
Sbjct: 262 -NEPTHNLYR-------SGTPAIDSALGPPVVTLLPMYGRTWVITAHPTASFIASLNQNS 313

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
            W                     ++    +        + + ++  + M+L +++  +S+
Sbjct: 314 PW------------LIGGLVMAGSVLFAALLVLYFSNGLRREEVLRKQMELAALVSHSSE 361

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
            I     +G I   N A   +FGY  E+ + +  T+ L           +    +     
Sbjct: 362 AIVAETPDGRITLWNPAAEAMFGYTAEEAIDQDLTMLLAP--QPYAMPEIDHADAALAAN 419

Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAE 579
                T+   ++   + +      +  S            DIS+  +   +        E
Sbjct: 420 ASAAQTMH-HRDGHQVHVLASKSPIIESEGTLSGHSHFFRDISDRVRSHQRSIDLNASLE 478

Query: 580 KESSHKSDFL--------ARVSH 594
            + + ++  L        A ++H
Sbjct: 479 HQVAERTGELVKFSVLQRAILAH 501



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 25/283 (8%), Positives = 65/283 (22%), Gaps = 23/283 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMR-LCDVSDILHIDPNNH---------IGDLLK 138
            D+ G++   +    K +G  A ++IG R      +   +              +   L+
Sbjct: 509 TDSSGFVTLFNPAAEKMLGYNAAEVIGRRKASQFIEQDELQERARMLADQTGTPVAHTLE 568

Query: 139 RQNTW----YGKTTLW-PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193
                       T+ W  +      +P+ L    +   + +  G+ G  +          
Sbjct: 569 AIAALTSLGRSDTSEWTYVSHDGRRLPVLLTLSTLRDDHDQVIGYLGVAV--DLIEQKLQ 626

Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253
               +         ++ K    +    +              ++                
Sbjct: 627 EKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSELPGAAQDMVAKID 686

Query: 254 LKTEKYPLLTSEESSLPEQEDFH------TINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
                   + ++     + E           +LNQ           + S +  E +    
Sbjct: 687 RSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQLFDNIAELMRSSLSAKPVEMIVEPL 746

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLL 350
                    +   +    V+           G +  +   F  
Sbjct: 747 PRDSRWLLGDALRINQVLVNLVGNAIKFTEQGEVVLSVRRFPS 789



 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/376 (8%), Positives = 78/376 (20%), Gaps = 14/376 (3%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI-LHIDPNNHIGDLLKRQNTWYGKTTL 149
             G +   +       G  A + I   L  +     +  P     D     N    +T  
Sbjct: 368 PDGRITLWNPAAEAMFGYTAEEAIDQDLTMLLAPQPYAMPEIDHADAALAANASAAQTMH 427

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
              +G  ++  +  +  PI       SG   F                  L+    H   
Sbjct: 428 -HRDGHQVH--VLASKSPIIESEGTLSGHSHF--FRDISDRVRSHQRSIDLNASLEHQVA 482

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
            + G               +    +   +        +    + +       +     + 
Sbjct: 483 ERTGELVKFSVLQRAILAHAGYAIIATDSS--GFVTLFNPAAEKMLGYNAAEVIGRRKAS 540

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
              E        +    Q    + +  +      S     +    +   +      +   
Sbjct: 541 QFIEQDELQERARMLADQTGTPVAHTLEAIAALTSLGRSDTSEWTYVSHDGRRLPVLLTL 600

Query: 330 PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389
                   H  +       + L + K  +        +        SD  A     +   
Sbjct: 601 ST--LRDDHDQVIGYLGVAVDLIEQKLQEKQLRLAMDAAKSANQSKSDFLANMSHEIRTP 658

Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449
               +     L   +        +  I           +       +       +  +E 
Sbjct: 659 MNAILGMLYLLQRSELPGAAQDMVAKID----RSARTLLEIINDILDFSKIEAGRIDLEC 714

Query: 450 EVMQLCSILEATSDGI 465
               L  + +  ++ +
Sbjct: 715 APFDLNQLFDNIAELM 730


>gi|186682409|ref|YP_001865605.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC
           73102]
 gi|186464861|gb|ACC80662.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC
           73102]
          Length = 1080

 Score =  359 bits (922), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 140/825 (16%), Positives = 280/825 (33%), Gaps = 59/825 (7%)

Query: 27  KKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFT 86
           +K+ +   +    + E    +   Q    +         N L  E  ++F        F 
Sbjct: 143 QKETEAALQRANQELEQRVAERTAQLEQVNTALRESEERNQLAMEVAWMFT-------FE 195

Query: 87  WNIDAHGYLKEISEELPKTIG---NYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTW 143
           W  +      E S +    +G     A +  G            D        L  +N+ 
Sbjct: 196 WEPNLD--TIERSPQSASILGLKSPSAQQDTGTSYFQRVHPDDRDRFLAGLQALAPENST 253

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
           Y  T  + +      V ++ +   ++    + +  R  G+           A  +     
Sbjct: 254 YKITYRF-VRPDGQIVILEESGRALFDGQGQLT--RIIGMTADVTERQQLEAELQESRAT 310

Query: 204 FSH----------LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL-TEYYAHKDD 252
                           I       +     I  + +      ++  +     E   +  D
Sbjct: 311 LHRQLTEIETIYQSAPIGLNVLDTDLRFVRINQRLAEINGFSVEEHIGRTIRELLPNIAD 370

Query: 253 VLKTEKYPLLTSEESSLPEQ---EDFHTINLNQYTKKQYFGTLQNNSKESFEYL--SHRN 307
            ++     +L + E  L  +   E      + +   + +      +       +      
Sbjct: 371 TVEELLCAILETGEPLLNVEIRGETPARPGVQRVWLESFLPLKDGDRVIGINTVCEDITE 430

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
              +     + E       D   +  +V    G   Y + S+   T       +   G L
Sbjct: 431 QIQVEEALRQSEERFRSMADNALVMVWVTDATGYCTYLSQSWYEFTGQTEATGL-GFGWL 489

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
             L       ++ A        S+    A  A  + ++                     +
Sbjct: 490 DAL-----HPEDCAFARETFVSSNTRHEAFRAE-YRLRRRDGEYRWAIDAASPWFGADRQ 543

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLF 485
                G   +  D +  +  +     +L   + +   G    N   G +   +     +F
Sbjct: 544 YKGYIGSVIDITDRKQAEEALRESEDRLRMAITSAQLGTWDWNLITGELR-WDTGCKAMF 602

Query: 486 GYPVE-DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL-LSLRI 543
           G   + +   + F   L  +    +   +   L+  L    +        E+K+   LR 
Sbjct: 603 GLSPDGESSIELFFEGLHPDDRDRLQEIVQAALNPVLGGFYDTEYRTIGIEDKVERWLRA 662

Query: 544 IIKKLPFSSC----YSLTMHDISEWKQEKNKLSH-------AKKIAEKESSHKSDFLARV 592
             +    +      +S T+ +I+E KQ + +          A++ AE+ +  K +FLA +
Sbjct: 663 KGQAYYDAKGKPLRFSGTVLNITEQKQAEAQREQLLRQEQAAREAAERANRMKDEFLAVL 722

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHE+RTPL  I+G+++++++     + + +  +  + I+R+    + +V DLLDIS+I  
Sbjct: 723 SHELRTPLNPILGWAKLLQS---PLVSSDKLQQGLSAIERNAKQQVQLVEDLLDISRIIR 779

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712
           GK+ L F  + L E ++ A+  V+L A  K I +      ++ ++  D   ++Q+  N+L
Sbjct: 780 GKLTLSFGAIDLSEPIAAALETVRLAAEAKAIQLEVLLDPSVGQVRGDADRLQQVVWNLL 839

Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           SNAI F  +GG + +  T        ++V DTG G+    L    + F Q  +S      
Sbjct: 840 SNAIKFNSTGGWVTVQLTSVDR-HAQIQVSDTGKGIQPEFLPHVFELFQQQDSSSTRSFG 898

Query: 773 GTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFPLYDTSHP 816
           G GLGL +A+ +V+A+ G     S     G    +  PL     P
Sbjct: 899 GLGLGLAIARQVVEAHGGTITAVSAGEGLGATFTVQLPLMPVPSP 943



 Score =  144 bits (362), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 60/590 (10%), Positives = 153/590 (25%), Gaps = 73/590 (12%)

Query: 41  KENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISE 100
            + P       +  T +  ++ S +        F F+   R++     I   GY K I+ 
Sbjct: 9   ADPPLESQSFPAVNTQEGGDAASPSEEA-----FFFE---RSLDLLSVIGLDGYFKRINP 60

Query: 101 ELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVP 160
              +T+G    + +     D+             + L            +  +       
Sbjct: 61  VFSQTLGYSEAEFLASPFLDLVHPDDHSATLREMEKLNTGLPTLYFENRYRTKNGCYR-W 119

Query: 161 IDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR---------------LDKKFS 205
           +   A P   R         + +        +  A  +R               L++  +
Sbjct: 120 LAWTASPQIDRG------VMYCVARDMTQQKETEAALQRANQELEQRVAERTAQLEQVNT 173

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSP--PPHLRMKNKVSSLTEYYAHKDDVLKTE------ 257
            L E ++ +    +  +    +  P      R     S L            T       
Sbjct: 174 ALRESEERNQLAMEVAWMFTFEWEPNLDTIERSPQSASILGLKSPSAQQDTGTSYFQRVH 233

Query: 258 ---KYPLLTSEESSLPEQE------DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
              +   L   ++  PE         F   +      ++    L +   +    +     
Sbjct: 234 PDDRDRFLAGLQALAPENSTYKITYRFVRPDGQIVILEESGRALFDGQGQLTRIIGMTAD 293

Query: 309 PSLSAYFDEGENLTPETVDK-----------CPIPFFVYSHG-NLFYANPSFLLLTKYKS 356
            +     +     +  T+ +            PI   V          N     +  +  
Sbjct: 294 VTERQQLEAELQESRATLHRQLTEIETIYQSAPIGLNVLDTDLRFVRINQRLAEINGFSV 353

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM-TF 415
            + I     +  LL  P ++D        +  +    +    R  T        + + +F
Sbjct: 354 EEHIGRT--IRELL--PNIADTVEELLCAILETGEPLLNVEIRGETPARPGVQRVWLESF 409

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
           +P +  ++    +  N +  +  +    +  +     +  S+ +     + + +  G   
Sbjct: 410 LPLKDGDR---VIGINTVCEDITEQIQVEEALRQSEERFRSMADNALVMVWVTDATGYCT 466

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
             +++  +  G      L   +   L     +        + S    +          ++
Sbjct: 467 YLSQSWYEFTGQTEATGLGFGWLDALHPEDCAFARETF--VSSNTRHEAFRAEYRLRRRD 524

Query: 536 EKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKE 581
            +             +      Y  ++ DI++ KQ +  L  ++      
Sbjct: 525 GEYRWAIDAASPWFGADRQYKGYIGSVIDITDRKQAEEALRESEDRLRMA 574



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 45/129 (34%), Gaps = 2/129 (1%)

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
            E + D +++I  +G     N   S+  GY   + L  PF   +  +  S     + ++ 
Sbjct: 39  FERSLDLLSVIGLDGYFKRINPVFSQTLGYSEAEFLASPFLDLVHPDDHSATLREMEKLN 98

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI 577
           +     TL       TK      L                  D+++ K+ +  L  A + 
Sbjct: 99  TG--LPTLYFENRYRTKNGCYRWLAWTASPQIDRGVMYCVARDMTQQKETEAALQRANQE 156

Query: 578 AEKESSHKS 586
            E+  + ++
Sbjct: 157 LEQRVAERT 165


>gi|46202248|ref|ZP_00053520.2| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 454

 Score =  359 bits (922), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 118/448 (26%), Positives = 196/448 (43%), Gaps = 11/448 (2%)

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
            +P+ S  N+ + + +   D         L       E  L  T  P         + P 
Sbjct: 3   HSPRSSFANSPRALAVLGPDGMLCHVGETLCRALGMAEPRLIGT-RPGWVDGPDSCHTPL 61

Query: 431 NGIEPEDVDTRINKRKMEIEVM---QLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
            G +         + ++   +    ++ +I+E T + I +++ +G +L  NR      G 
Sbjct: 62  PGNQILVELAPEAEARLRDSLRVNLEMRAIIENTFEFIGLLSPDGRLLDANRTALSFIGL 121

Query: 488 PVED-ILRKPFTVFLEQNTPSVMNHYL-TEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
              + IL   F               L   I      + +   T        +  +   +
Sbjct: 122 ESIEPILGVHFAETPWWEHSPKERAMLKDGITRASAGEFVRFETTHIDAHGGIAYVDFSV 181

Query: 546 KKLPFSSCYSLTM----HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
           K +P        +     DI++ K+ +  L  AK+ AE  +  KS FLA +SHE+RTPL 
Sbjct: 182 KPVPDRDGNIQFLVPEGRDITQRKRAEAALVSAKQEAEAANRAKSQFLATMSHELRTPLN 241

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           A+IGFSE I     GP    R +EY   I  +G  +  ++ D+LD+S+IE+G+  L  E 
Sbjct: 242 AVIGFSEAILAGAAGPASLERCVEYMELIHSAGQHLRALIEDILDVSRIEAGRTELDEED 301

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
               E V  A  L++  +    +      A  +PR+  D R ++QI LN+  NA+ FTP+
Sbjct: 302 CDPTELVRAAARLLEHKSVVSGVDFTVVIAPGLPRMRLDPRRIRQILLNLAGNALKFTPT 361

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           GG++ I  T   +  + L V DTG+G+      K  + F Q  +S   R +G+GLGL + 
Sbjct: 362 GGKVGICATLVPDG-LALVVSDTGIGIAPEHHAKIWQAFYQADSSLSRRHQGSGLGLAIV 420

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +  V+A+ G   + S P +GT I ++ P
Sbjct: 421 RHFVEAHGGTVSLDSAPGQGTRITVLLP 448



 Score = 47.7 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/252 (9%), Positives = 64/252 (25%), Gaps = 20/252 (7%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFK-MIGMRLCDVSDILHIDPNNHIGDLLKRQNTW 143
           F   +   G L + +      IG  + + ++G+   +       + +     +LK   T 
Sbjct: 98  FIGLLSPDGRLLDANRTALSFIGLESIEPILGVHFAE---TPWWEHSPKERAMLKDGITR 154

Query: 144 --YGKTTLW---PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
              G+   +    I+       +D +  P+  R+         G            A   
Sbjct: 155 ASAGEFVRFETTHIDAHGGIAYVDFSVKPVPDRDGNIQFLVPEG--RDITQRKRAEAALV 212

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
              ++    +  K    +    +       +P   +   ++            +      
Sbjct: 213 SAKQEAEAANRAKSQFLATMSHELR-----TPLNAVIGFSEAILAGAAGPASLERCVEYM 267

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
             + ++ +      ED   ++      +     L     +  E +              G
Sbjct: 268 ELIHSAGQHLRALIEDILDVS----RIEAGRTELDEEDCDPTELVRAAARLLEHKSVVSG 323

Query: 319 ENLTPETVDKCP 330
            + T       P
Sbjct: 324 VDFTVVIAPGLP 335



 Score = 45.4 bits (106), Expect = 0.039,   Method: Composition-based stats.
 Identities = 16/173 (9%), Positives = 40/173 (23%), Gaps = 6/173 (3%)

Query: 284 TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY 343
               +     N         +            E   +   T +       +   G L  
Sbjct: 54  PDSCHTPLPGNQILVELAPEAEARLRDSLRVNLEMRAIIENTFEFIG---LLSPDGRLLD 110

Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403
           AN + L     +S++ I       T        +   +K  +   S    +      H  
Sbjct: 111 ANRTALSFIGLESIEPILGVHFAETPWWEHSPKERAMLKDGITRASAGEFVRFETT-HID 169

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
                  +  +  P    +   + +   G   +    +  +  +     +  +
Sbjct: 170 AHGGIAYVDFSVKPVPDRDGNIQFLVPEG--RDITQRKRAEAALVSAKQEAEA 220


>gi|325107448|ref|YP_004268516.1| PAS/PAC sensor hybrid histidine kinase [Planctomyces brasiliensis
           DSM 5305]
 gi|324967716|gb|ADY58494.1| PAS/PAC sensor hybrid histidine kinase [Planctomyces brasiliensis
           DSM 5305]
          Length = 1168

 Score =  359 bits (922), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 130/752 (17%), Positives = 263/752 (34%), Gaps = 45/752 (5%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYA----FKMIGMRLCDVSDILHIDP-NNHIGDLLKRQN 141
           W ++        + E    +G                D          +N I   L+ + 
Sbjct: 259 WTLETDELWT--NHEFWILLGYRQNGEFPHNQIASFRDHVHPKDRQLLDNAIETHLRMRL 316

Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
               +   W ++    +    +       RN      R  G+V                +
Sbjct: 317 PLDVEIRFWHLQDECRW----MRLRAQTERNANDVPVRLAGVVEDIHAHKLAELKLNGRE 372

Query: 202 KKFSHLHEIKKGH---SSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKD--DV 253
           ++   L  + +       +      +              + + +             DV
Sbjct: 373 QEVQRLALVARQTTNGVVITNSSGQVEWVNEGFSRLTGYTLDDLLGRKPGSVLQGPHSDV 432

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
                     +   S   +   +  +  +Y  +     + +   +   +++ ++  S   
Sbjct: 433 GTISDMRRAIAAGQSFKAELVNYHKSGREYWVRIEGDPIHDEQGQLTGFIAIQSDISERV 492

Query: 314 YFDEGENLTPE----TVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
            F +    + E     ++  P+  +     G + + N + + L       +        +
Sbjct: 493 QFAQELAASREQFKNMLEHLPVAAYTCDANGLITFYNKAAVKLWGRTPALNNPADRYCGS 552

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
                +       +  ++ R+        +    ++    +            N   E  
Sbjct: 553 FRLFERNGTPLPAEKHLMARALSQPGQNQSSEIIVEAPDGSRKTGMAYAKALVNAEQEVT 612

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD-GIAI-INREGIILSTNRAVSKLFG 486
               +  +  +    ++ +     +L   L+   +  I    + +GII   N     + G
Sbjct: 613 GGVNVIVDMTERIALEQSLREATARLELCLKILDEHAIVAETDLKGIIRDVNDMFCDVSG 672

Query: 487 YPVEDILRKPFTVFLEQNTPSV-MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
           Y  E+++     +      P         +I         +       K  +L  +   I
Sbjct: 673 YSREELIGNSHRILNSGFHPRTMWTEVFRQIARTG---MWQGEICNRRKNGELYWVDTTI 729

Query: 546 KKLPFS----SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
             +  +    + Y    +DI+       +L  AK+ A   S  KS+FLA +SHEIRTPLT
Sbjct: 730 AAIHDAAGRPNGYFAIRNDIT-------ELKAAKEAALAASHSKSEFLANMSHEIRTPLT 782

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           AIIG++E++++         +     N I  +G  +L I++D+LD+SKIE+GKM++    
Sbjct: 783 AIIGYAEILRDDPEIAESPEKRSHALNTIHEAGRHLLTIISDILDLSKIEAGKMSIEQTD 842

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTP 720
            S+   +S+  S ++  A  K + + T  A  IP RI +D   ++QI +N++ NAI FT 
Sbjct: 843 TSVANVLSQVESFLRPRAVGKGLSLTTRLAQAIPDRIQSDPTRLRQILMNLVGNAIKFTE 902

Query: 721 SGG-QIIIS-TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
           +G  Q+ +S       E +   + DTG GMT+ + E+  + F Q   S   +  GTGLGL
Sbjct: 903 AGHIQLTVSRIQREDKEFLQFDIEDTGTGMTDTQREQIFQAFSQADTSVTRQYGGTGLGL 962

Query: 779 PLAKAMVDANMGKFY-IFSTPAKGTLIEIIFP 809
            + + +     G  + ++S   +GT      P
Sbjct: 963 VICRRLARLMNGDVWLLWSEAGRGTCFRAALP 994



 Score = 43.1 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 46/352 (13%), Positives = 96/352 (27%), Gaps = 33/352 (9%)

Query: 235 RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294
           +  ++   LT+       +  ++    L   +       D   I  N  T  Q    L +
Sbjct: 53  QSFHREIDLTKRELRSRHLAVSQDLLSLRIVQELNRSPVDREMIGENLATLNQQHDQLVD 112

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKY 354
           +       L  +  P +         L+  T +            N   A  S +     
Sbjct: 113 DLIRRNRGLPVQFRPIVDHVLALTPLLSEFTAE-IRTALASDGQDNASVAAASVIQRQYG 171

Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
            ++ ++  A                         S     AA+       +N    L ++
Sbjct: 172 SALQELSQA-----------------------LNSRSETFAAAHPRWGWLFNSRTLLGLS 208

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII 474
                    +           +         ++      L S + AT+ G+     E   
Sbjct: 209 CFLAPVILGYRLQRQFQAQADQLTARG---DEILATKRHLLSAIGATAGGLWSWTLETDE 265

Query: 475 LSTNRAVSKLFGYPVEDILRKP----FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530
           L TN     L GY             F   +      ++++ +   L + L   +E    
Sbjct: 266 LWTNHEFWILLGYRQNGEFPHNQIASFRDHVHPKDRQLLDNAIETHLRMRLPLDVEIRFW 325

Query: 531 GSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
               E + + LR   ++         +  + DI   K  + KL+  ++  ++
Sbjct: 326 HLQDECRWMRLRAQTERNANDVPVRLAGVVEDIHAHKLAELKLNGREQEVQR 377


>gi|194017200|ref|ZP_03055812.1| alkaline phosphatase synthesis sensor protein PhoR [Bacillus
           pumilus ATCC 7061]
 gi|194011068|gb|EDW20638.1| alkaline phosphatase synthesis sensor protein PhoR [Bacillus
           pumilus ATCC 7061]
          Length = 580

 Score =  359 bits (922), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 94/363 (25%), Positives = 159/363 (43%), Gaps = 23/363 (6%)

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
           E++  +L +++E    GI +I++ G I   NR   K F       + K +          
Sbjct: 236 EMQRDRLQTVIENIGAGIILIDKMGYIHLVNRTFRKQFKVQKHIYMHKLYHEAFTHEEII 295

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWK 565
            +      +    +R+ L    L    E +   +  +             L  HD++E K
Sbjct: 296 ELI-DEIFMTETKVRKFL---RLAVDIERRYFQVDGVPILSTDDEWKGIVLVFHDVTETK 351

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           Q +                + DF+A VSHE++TP+T+I GFSE + +            E
Sbjct: 352 QLE--------------QMRKDFVANVSHELKTPITSIKGFSETLLDGAID--DKEALTE 395

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           + + I +    +  ++ DLLD+SKIE  +  L+ +  +  E + E   L++  A EK I 
Sbjct: 396 FLSIILKESVRLETLIQDLLDLSKIEQQQFKLNIQEANATEIIQEIQVLLKQKATEKGIQ 455

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +          ++AD   +KQI LN+++NA+ +TP GG + IS            V DTG
Sbjct: 456 LHVRVPKEPVYVMADPLRLKQIFLNLVNNALTYTPEGGSVTISARPRKGAY-EFDVADTG 514

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +GM   E+ +  + F +I   +     GTGLGL + K +V+A+ G   + S   KGT   
Sbjct: 515 IGMKKSEIPRIFERFYRIDKDRSRNSGGTGLGLAIVKHLVEAHEGTISVRSKQGKGTTFT 574

Query: 806 IIF 808
           +  
Sbjct: 575 VSL 577


>gi|297568082|ref|YP_003689426.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296923997|gb|ADH84807.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 661

 Score =  359 bits (921), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 90/381 (23%), Positives = 172/381 (45%), Gaps = 18/381 (4%)

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF---TV 499
            + ++     +L +IL++   G+   +++G +   N    +L G+ + D L +P      
Sbjct: 24  AEERLRDSEGRLSAILQSIGAGVIATDQQGRVAFLNPVAERLTGWDLVDALNRPVMEVLN 83

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL--- 556
            +++ +   +   L  +             +  +++ K   +   +  +   S       
Sbjct: 84  LVDEASGRPLTAPLQRVQEDGEIIDCSGELVLRSRQGKNYPVSCTVAPIASFSGIIGCVF 143

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
              D    ++ +  L  AK+ AE+ S  KS+FLA +SHEIRTPLT I+G ++++     G
Sbjct: 144 VFRDTIREREIQRNLLSAKEEAERASQAKSEFLASMSHEIRTPLTTILGMADLLDKTPLG 203

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
                   +Y      +G  +LD++N +LD+SKIE+GK+ +      LD  + +   ++ 
Sbjct: 204 A----EQRQYVWASRAAGENLLDLINGILDLSKIEAGKLEIEVMEFDLDHLLRQTCEIMA 259

Query: 677 LYANEKRILIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH---- 731
           L A++K +      +      +L D   ++QI +N++ NAI FT  G ++ +        
Sbjct: 260 LRAHQKGLEFTCRLSWQGSCLVLGDATRIRQILVNLIGNAIKFTERG-KVTVEAVRWPAE 318

Query: 732 --TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
               N      V DTG+G+   + E   + F Q+ +S   R  GTGLGL +++ +V    
Sbjct: 319 ESAENTWFGFVVSDTGIGIPPDKQEMVFEDFAQVDSSTSRRYGGTGLGLAISRKLVQMMG 378

Query: 790 GKFYIFSTPAKGTLIEIIFPL 810
           G   + S   +G+   +  PL
Sbjct: 379 GTIRLASREGEGSRFTVEIPL 399



 Score = 48.1 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/143 (11%), Positives = 38/143 (26%), Gaps = 3/143 (2%)

Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
                 + E      +             G + + NP    LT +  VD +     +  L
Sbjct: 24  AEERLRDSEGRLSAILQSIGAGVIATDQQGRVAFLNPVAERLTGWDLVDAL-NRPVMEVL 82

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
               + S      P+   + D   I  S  L  ++  +  +  ++      A+       
Sbjct: 83  NLVDEASGRPLTAPLQRVQEDGEIIDCSGEL-VLRSRQGKNYPVSCTVAPIASFSGIIGC 141

Query: 430 QNGIEPEDVDTRINKRKMEIEVM 452
                    +  I +  +  +  
Sbjct: 142 VFVFRDTIREREIQRNLLSAKEE 164



 Score = 39.2 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 17/144 (11%), Positives = 42/144 (29%), Gaps = 13/144 (9%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTW----- 143
            D  G +  ++    +  G      +   + +V +++       +   L+R         
Sbjct: 49  TDQQGRVAFLNPVAERLTGWDLVDALNRPVMEVLNLVDEASGRPLTAPLQRVQEDGEIID 108

Query: 144 -YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFG-IVHVNRVDNDPRALGKRLD 201
             G+  L   +G N  V   +A +        FSG  G   +      + + +       
Sbjct: 109 CSGELVLRSRQGKNYPVSCTVAPIA------SFSGIIGCVFVFRDTIREREIQRNLLSAK 162

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIF 225
           ++     + K    +    +    
Sbjct: 163 EEAERASQAKSEFLASMSHEIRTP 186


>gi|284050377|ref|ZP_06380587.1| multi-sensor Signal transduction histidine kinase [Arthrospira
           platensis str. Paraca]
          Length = 578

 Score =  359 bits (921), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 95/540 (17%), Positives = 203/540 (37%), Gaps = 35/540 (6%)

Query: 279 NLNQYTKKQYFGTLQNNSKESFEYLS----HRNHPSLSAYFDEGENLTPETVDKCPIPFF 334
           +       +    + N+      Y+       +         E E L    V+  P  F 
Sbjct: 55  DGVIRWVYEEVNIIYNDDGSPLRYVGFAEDISDRKQAELALAESEELLRLAVNHAPDIFV 114

Query: 335 VYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393
           +Y     L + N   L  T +     I        L              + L       
Sbjct: 115 IYDSDRRLKFVNQRVLERTGWSEETFIGRRD--EELFL-----PEETCHYLPLLEKTIQT 167

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
           +       TI    +    +        ++        G+  +    +  ++K+     +
Sbjct: 168 LTIQIGEATITLPNQTPKTVIIKYLPLLDKQGRLSQILGLTFDITHYKQAEQKLRDSEER 227

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
             +  E  + G+A+++ +G  L  NR++ ++ GY   ++L+                  +
Sbjct: 228 FRTAFEDAAIGMALLSSQGNCLKVNRSLCEMLGYQEAELLQLKCKDITHPEDYEQEVKSI 287

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKN 569
            +++     +          K+  ++ + + +  +         +     +ISE +  + 
Sbjct: 288 KKLIE-GQVKYYYVEKRYLHKQGYVIWVLLSMSIVRNIDGVPLYFIAQAQNISERRAVE- 345

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
                          K++F++ VSHE+RTPLTAI G   ++ +  +       + ++   
Sbjct: 346 -------------QMKNEFISVVSHELRTPLTAIQGSLGLLSSGLYDHKPQE-FHKFIEI 391

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
                  ++ +VND+LDI ++ SG++    E  S  E + + I+ +Q  A+   I +   
Sbjct: 392 ALLETERLVRMVNDILDIERLNSGEVQFQMEACSAQELMMQVINSLQAIAHRDSITL--E 449

Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749
                 ++ A   ++ Q   N++ NAI F+P    + +S  +  ++ V+ +VRD G G+ 
Sbjct: 450 ILPTSVQLWAARDAMLQTLTNLVGNAIKFSPPHTTVTLS-AYPQDDMVLFQVRDQGRGIP 508

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             +L+     F Q+  S   +  GTGLGL + +++++ + GK ++ S  AKG+      P
Sbjct: 509 PEKLKTIFSRFQQVDASDSRQKSGTGLGLSICQSIIEQHGGKIWVESQLAKGSTFYFTIP 568



 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 35/298 (11%), Positives = 87/298 (29%), Gaps = 21/298 (7%)

Query: 347 SFLLLTKYKSVDDIEIAG-GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405
           ++  +         +     L+T+    +         V+ Y+  +       R + I  
Sbjct: 1   AYEKIWGRTCESLYQNPDSWLNTIYPEDR-------GAVINYQEKQHQNNLVKREYRIIR 53

Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465
           N      +        N     +   G   +  D +  +  +      L   +    D  
Sbjct: 54  NDGVIRWVYEEVNIIYNDDGSPLRYVGFAEDISDRKQAELALAESEELLRLAVNHAPDIF 113

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
            I + +  +   N+ V +  G+  E  + +                 L + +     Q  
Sbjct: 114 VIYDSDRRLKFVNQRVLERTGWSEETFIGRRDEELFLPEETCHYLPLLEKTIQTLTIQIG 173

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKE 581
           E         +   ++ I    L               DI+ +KQ + KL  +++     
Sbjct: 174 EATITL--PNQTPKTVIIKYLPLLDKQGRLSQILGLTFDITHYKQAEQKLRDSEERFRTA 231

Query: 582 SSHKSDFLARVSHE-----IRTPLTAIIGF--SEVIKNQRFGPLGNPRYIEYANYIDR 632
               +  +A +S +     +   L  ++G+  +E+++ +         Y +    I +
Sbjct: 232 FEDAAIGMALLSSQGNCLKVNRSLCEMLGYQEAELLQLKCKDITHPEDYEQEVKSIKK 289



 Score = 41.9 bits (97), Expect = 0.44,   Method: Composition-based stats.
 Identities = 10/84 (11%), Positives = 34/84 (40%), Gaps = 4/84 (4%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYG-KTTL 149
            G   +++  L + +G    +++ ++  D++     +     I  L++ Q  +Y  +   
Sbjct: 245 QGNCLKVNRSLCEMLGYQEAELLQLKCKDITHPEDYEQEVKSIKKLIEGQVKYYYVEKRY 304

Query: 150 WPIEGTNLYVPIDLAALPIYSRNR 173
              +G    + + L+   + + + 
Sbjct: 305 LHKQG--YVIWVLLSMSIVRNIDG 326



 Score = 41.9 bits (97), Expect = 0.45,   Method: Composition-based stats.
 Identities = 20/166 (12%), Positives = 48/166 (28%), Gaps = 8/166 (4%)

Query: 56  DQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIG 115
           D +    +     +SE             F    D+   LK +++ + +  G      IG
Sbjct: 84  DISDRKQAELALAESEELLRLAVNHAPDIFV-IYDSDRRLKFVNQRVLERTGWSEETFIG 142

Query: 116 MRLCDVSDILHI-DPNNHIGDLLKRQNTWYGK-TTLWPIEGTNLYVPIDLAALPIYSRNR 173
            R  ++            +   ++      G+ T   P +       + +  LP+  +  
Sbjct: 143 RRDEELFLPEETCHYLPLLEKTIQTLTIQIGEATITLPNQTPK---TVIIKYLPLLDKQG 199

Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEK 219
             S  +  G+              +  +++F    E      ++  
Sbjct: 200 RLS--QILGLTFDITHYKQAEQKLRDSEERFRTAFEDAAIGMALLS 243


>gi|320354604|ref|YP_004195943.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
            2032]
 gi|320123106|gb|ADW18652.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
            2032]
          Length = 1626

 Score =  359 bits (921), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 120/634 (18%), Positives = 227/634 (35%), Gaps = 28/634 (4%)

Query: 183  IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS 242
            +  V   D+    L   L         ++ G + ++ +  +       P           
Sbjct: 503  LARVGLDDDALARLDLSLAGVSPAARALRAGTTQLDDQAMETRPIDRSPEDAATGAT--- 559

Query: 243  LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302
                  H                   +  Q+     + +     +  G L    + +   
Sbjct: 560  ------HPSSAAFPVLIDDEPRIVLHIHAQDKHRFDDQHIELFARLAGNLGIALELAAAR 613

Query: 303  LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIE 361
             +  N  +      E  +     ++      + +       Y +PSF  +  Y   + + 
Sbjct: 614  AAELNAVNERLRVSEERHAFA--LEASNDGLWDWDLDTGRVYCSPSFFTMLGYTPGELVP 671

Query: 362  IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                   L+                  ++        R  T   +  +   ++       
Sbjct: 672  HIQSWHELVHPDD--RAWVSAEAYRRIAEEGGFELEYRSRT--KDGRSLWVLSRGKVVAR 727

Query: 422  NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
                  +   G+  +    +  + ++     +  +IL A   GI  I ++  ++  NR +
Sbjct: 728  APDGRPLRVVGVHTDLTTHKRIELELRTVAEEQQAILNAAPVGICFI-KDRTVVRCNRKL 786

Query: 482  SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
             ++FG+    +       + E           T   +L  +           ++      
Sbjct: 787  EEIFGHAPGAMAGTSTLPWYESEAEYQEIGR-TIAHALKEQALFHAERQLVRQDGSRFWA 845

Query: 542  RIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
            R+  + L            + DI++ ++    L  AK+ AE  +  KS+FLA +SHEIRT
Sbjct: 846  RMTAQALAPGDLSKGLVGMLEDITDEREASAALHAAKERAEAATRAKSEFLANMSHEIRT 905

Query: 599  PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
            P+ AI+GF+ +IK     P      +     +  + + +L+I+ND+LDISKIE+ KM L 
Sbjct: 906  PMNAILGFAHLIKRDPLTP----SQLAQLEKLSAATHHLLNIINDILDISKIEANKMELG 961

Query: 659  FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718
             E   L   +    +LV      K + +     +    +  D   + QI LN++SNAI F
Sbjct: 962  VEDFDLARIIDRIAALVADSVLAKHLELFVDLDHVPSMLRGDGSRLGQILLNVVSNAIKF 1021

Query: 719  TPSGGQ-IIIST--THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
            T  G   I +           +   +RDTG+GM+  ++E+A  PF Q  +S   R  GTG
Sbjct: 1022 TEQGAVDITVRVVDAREDRPVLRFEIRDTGIGMSAEQVERAFLPFEQADSSMTRRFGGTG 1081

Query: 776  LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            LGL +++ +V+   G+  + S    GTL  +  P
Sbjct: 1082 LGLTISRQLVELMGGRMGVESELGHGTLCWLEIP 1115



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/155 (14%), Positives = 46/155 (29%), Gaps = 10/155 (6%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
              +    Q  ++LE     + I    +G +L  N    +LFG   E         F   
Sbjct: 5   AAHDRHNEQGTAMLEQAPCPLLITRMDDGRLLYCNVRARQLFGLDGETCRLVSIEQFYHH 64

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS--LRIIIKKLPFSSCYSLTMHDI 561
                    L  +        +E+      ++ +     +   + +          + DI
Sbjct: 65  PADRA--DLLDTLRHDGF--VVEREQEFVDRQGRAFPALVSSTLVEYGTQPALLSVITDI 120

Query: 562 SEWKQEKNKLSHAKKIAEKESSHK---SDFLARVS 593
           S+ +Q +  L   +      +      +  L R+S
Sbjct: 121 SQRRQAEQALQQERAQLRARTERLQLHNQLLGRLS 155



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/147 (11%), Positives = 37/147 (25%), Gaps = 13/147 (8%)

Query: 312 SAYFDEGENLTPETVDKCPIPFFVY--SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
            A  D         +++ P P  +     G L Y N     L        ++        
Sbjct: 4   PAAHDRHNEQGTAMLEQAPCPLLITRMDDGRLLYCNVRARQLFG------LDGETCRLVS 57

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
           ++       +    +   R D            +        A+      +    P  + 
Sbjct: 58  IEQFYHHPADRADLLDTLRHDG--FVVEREQEFVDRQGRAFPALVSSTLVEYGTQPALLS 115

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCS 456
                 +    R  ++ ++ E  QL +
Sbjct: 116 VI---TDISQRRQAEQALQQERAQLRA 139



 Score = 43.1 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 22/255 (8%), Positives = 67/255 (26%), Gaps = 17/255 (6%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMI--GMRLCDVSDILHIDPNNHIG-DLLKRQNTW 143
           W++D  G     S      +G    +++       ++         +      +  +  +
Sbjct: 645 WDLDT-GR-VYCSPSFFTMLGYTPGELVPHIQSWHELVHPDDRAWVSAEAYRRIAEEGGF 702

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +      +G +L+V   L+   + +R  +    R  G+              + + ++
Sbjct: 703 ELEYRSRTKDGRSLWV---LSRGKVVARAPDGRPLRVVGVHTDLTTHKRIELELRTVAEE 759

Query: 204 FSHLHEIKK------GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257
              +              +V +    +       P            E  A   ++ +T 
Sbjct: 760 QQAILNAAPVGICFIKDRTVVRCNRKLEEIFGHAPGAMAGTSTLPWYESEAEYQEIGRTI 819

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
            + L   E++    +      + +++  +     L      S   +      +       
Sbjct: 820 AHALK--EQALFHAERQLVRQDGSRFWARMTAQAL-APGDLSKGLVGMLEDITDEREASA 876

Query: 318 GENLTPETVDKCPIP 332
             +   E  +     
Sbjct: 877 ALHAAKERAEAATRA 891



 Score = 38.1 bits (87), Expect = 6.8,   Method: Composition-based stats.
 Identities = 24/293 (8%), Positives = 69/293 (23%), Gaps = 14/293 (4%)

Query: 184 VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL 243
           V + R  +D       LD          +G     +       + +    +   + +S  
Sbjct: 187 VWMFRETDDAAGQLICLDLYEQASRTHTRGQILHGEMFRRELPELATRRFVAASDPLSDP 246

Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSLPEQED---FHTINLNQYTKKQYFGTLQNNSKESF 300
                    +       LL     S         F  +    Y +          + +  
Sbjct: 247 RTAAYGPAYLTPLGITSLLDCGIVSGGRTRGVICFEHVRRPHYWEADEIAFGCQVADQLG 306

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDD 359
             L       +       E L  +  +     ++ +         +     +        
Sbjct: 307 MVLLTDERLQVVQSLHRSEQLLKQAQEVAQTGYWHFDFATRTLSLSDETYRIFDAPE--- 363

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
                 +          D   I+                R+            +      
Sbjct: 364 -GSMRSIEAFNRMVPPEDRPLIEQQWRIARQGAPYRVRHRILV----GGVVKWLEERASI 418

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA-IINRE 471
           + +   + +   G   +      ++ ++E  + ++ ++L  +++ IA + + E
Sbjct: 419 EFDGQGKPIQALGTTQDITRQMEDQFRLE-RLNRVYAMLGHSNEAIARVRDPE 470


>gi|315126944|ref|YP_004068947.1| two-component member protein [Pseudoalteromonas sp. SM9913]
 gi|315015458|gb|ADT68796.1| putative two-component member protein [Pseudoalteromonas sp.
           SM9913]
          Length = 1103

 Score =  359 bits (921), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 102/502 (20%), Positives = 211/502 (42%), Gaps = 23/502 (4%)

Query: 317 EGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
             E+     +         +   G +   N +   +  ++  + I     +  L+     
Sbjct: 269 AEESRLDAILSTAIDGIVTINIKGTILSFNKAAETIFGWQDNEVIGQNVKI--LMADDIA 326

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
           + ++A          +  I  +  +     N         +   +  Q        G   
Sbjct: 327 NQHDAFLKNTTNHEVKRVIGVNRDVWAKHKNGHQFP--IRLGIGEVKQLQTETLFVGFIT 384

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIA---IINREGIILSTNRAVSKLFGYPVEDI 492
           +  + R  ++ +  +  Q  +++     G+    +++    +L  + +V +L GY  E+ 
Sbjct: 385 DLTEQRALQQSLIEKERQYRTLMNNMP-GVVFRCLLDEHWSMLFISPSVYELTGYRAEEF 443

Query: 493 LRK--PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL----RIIIK 546
             +   F   + +   + ++  + + ++   + ++        +   ++ +     II  
Sbjct: 444 TEQRITFAELIVKEDEAAISLAIDQAVASTSQYSI--EYRIRHRNGNIIWVLDQASIITN 501

Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
               +      + DI++  + +  L  AK  AE  +  K  F+A +SHEIRTP+ AIIGF
Sbjct: 502 SKDDTRWVDGVLVDITKRHEYEQSLKQAKYEAEAAAQAKQSFMANMSHEIRTPMNAIIGF 561

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
           S+++ +    PL   +  +    ++ +   +L ++ND+LD +K+E GK+ +     +L E
Sbjct: 562 SDILMD---SPLNKEQQKQII-TVNNAARSLLHLLNDILDSAKLEKGKLEIQKVHFNLQE 617

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQI 725
            +   +S   L A  K + +    A+N+ P    D   ++Q+  N++ NAI FT  G  +
Sbjct: 618 LLDNIVSTFWLDAKRKDLQLILKIADNVNPFYFGDDTRLRQVLTNLIGNAIKFTEQG-HV 676

Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
            +S TH  N+ ++  V+D+G+G+    LE   KPF Q   +   R  GTGLG  ++K +V
Sbjct: 677 TVSVTHKPNQPILFEVQDSGIGIEKGRLEAIFKPFEQADGTTTRRFGGTGLGTTISKQLV 736

Query: 786 DANMGKFYIFSTPAKGTLIEII 807
           +   GK Y  ST  +G+     
Sbjct: 737 ELMGGKIYAQSTLGQGSCFSFT 758


>gi|116620870|ref|YP_823026.1| multi-sensor hybrid histidine kinase [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116224032|gb|ABJ82741.1| multi-sensor hybrid histidine kinase [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 1092

 Score =  359 bits (921), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 110/529 (20%), Positives = 194/529 (36%), Gaps = 34/529 (6%)

Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSV 357
                  R   +      E E      +   P   F+    G + Y N +F+    + + 
Sbjct: 300 RRTLRIRRTAENAWTRAVEAERRFETFMAHTPAISFIKDAAGRMIYVNHAFVRFHGFSAA 359

Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
             I      + L              V+              L     +      +    
Sbjct: 360 QSIGRLD--TELFGESVAGIRERDAEVLQTGR-----PVQYLLPLPGTDGALYYWLVLKF 412

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
             +       +    I  +  D +     +     +   + E     I  I+R+G++   
Sbjct: 413 LLRGEAGETRIGVVAI--DISDQQRAAELIARSEERYRMLFEEAPVAIHEIDRDGLVTRI 470

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
           NRA   L GY   +I+ +  + F+  +        +   +    R           K+ +
Sbjct: 471 NRAGRMLCGYSESEIIGRHASEFVAPHYREESRAAVHAKMK-GTRPLAPFERHYQRKDGR 529

Query: 538 LLSLRIIIKKLPFSSCYSLTMH----DISEWKQEKNKLSHA--------------KKIAE 579
           LL + +    +         +     D++E  + + +L                  + A 
Sbjct: 530 LLRVEVHETAIFDHGGEIQGLRSCLIDLTERYEAQERLDAFALQLQQNNSALALALESAR 589

Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639
           + +  KS FLA +SHEIRTP+  ++G +E++                A  + +SG  +L 
Sbjct: 590 QATRLKSQFLANMSHEIRTPMNGVLGMTELLVQSGL----TEEQRSLALSVTQSGEHLLA 645

Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RIL 698
           I+ND+LD SKIESGK+ L   P      +   I L+   A+ K + +    A  +P R+ 
Sbjct: 646 IINDILDFSKIESGKLELEATPFDPTATIEAVIELMAPTAHIKNLELTYWIAAEMPARVR 705

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
            D   ++Q+ LN+L NA+ FT  G   I +T   + + + + V DTG+G+    +     
Sbjct: 706 GDAARLRQVLLNLLGNALKFTAEGEIAIQATFDAAADRLRVSVADTGIGIPEAAIPHLFA 765

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
            F Q  NS   R  GTGLGL +AK++V+   G+  I S    G+     
Sbjct: 766 AFTQADNSTTRRFGGTGLGLTIAKSIVELMDGEIGIESRYGHGSTFWFT 814



 Score = 70.8 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 35/382 (9%), Positives = 100/382 (26%), Gaps = 17/382 (4%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           DA G +  ++    +  G  A + IG    ++             ++L+           
Sbjct: 338 DAAGRMIYVNHAFVRFHGFSAAQSIGRLDTELFGESVAGIRERDAEVLQTGRPVQYL-LP 396

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
            P     LY  + L  L +     E     G   + ++        + +  ++      E
Sbjct: 397 LPGTDGALYYWLVLKFL-LRGEAGE--TRIGVVAIDISDQQRAAELIARSEERYRMLFEE 453

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS----SLTEYYAHKDDVLKTEKYPLLTSE 265
                  ++++       ++                +      H  +  +   +  +   
Sbjct: 454 APVAIHEIDRDGLVTRINRAGRMLCGYSESEIIGRHASEFVAPHYREESRAAVHAKMKGT 513

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
               P +  +   +      + +   + ++  E     S     +      E  +     
Sbjct: 514 RPLAPFERHYQRKDGRLLRVEVHETAIFDHGGEIQGLRSCLIDLTERYEAQERLDAFALQ 573

Query: 326 VDK--CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
           + +    +   + S          FL    ++    +    G++ LL    L++      
Sbjct: 574 LQQNNSALALALESARQATRLKSQFLANMSHEIRTPMNGVLGMTELLVQSGLTEEQRSLA 633

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD---- 439
           + + +S    +A    +          L +   PF+        +          +    
Sbjct: 634 LSVTQSGEHLLAIINDILDFSKIESGKLELEATPFDPTATIEAVIELMAPTAHIKNLELT 693

Query: 440 ---TRINKRKMEIEVMQLCSIL 458
                    ++  +  +L  +L
Sbjct: 694 YWIAAEMPARVRGDAARLRQVL 715


>gi|16124282|ref|NP_418846.1| sensory box histidine kinase/response regulator [Caulobacter
           crescentus CB15]
 gi|221232965|ref|YP_002515401.1| PAS-family sensor histidine kinase [Caulobacter crescentus NA1000]
 gi|13421116|gb|AAK22014.1| sensory box histidine kinase/response regulator [Caulobacter
           crescentus CB15]
 gi|220962137|gb|ACL93493.1| PAS-family sensor histidine kinase [Caulobacter crescentus NA1000]
          Length = 900

 Score =  359 bits (921), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 113/786 (14%), Positives = 239/786 (30%), Gaps = 53/786 (6%)

Query: 55  TDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI 114
           +  +    +  +         +     +  FT  I A G    +++      G    +++
Sbjct: 2   SQASTPEPAPASSFGEGEAARWFFDNASDLFT-VISAEGRFISVNDAWSHLTGWARDELV 60

Query: 115 GMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNRE 174
           G                  G  L++  +   +  +   +G   ++        +  R+R 
Sbjct: 61  GQPTIKFVHPDSQAELVDTGRRLRQTGSAINELKIRCKDGR--WIW-------LQGRSRL 111

Query: 175 FSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS----- 229
                  G++H    + + R   +   +  + L E         + +             
Sbjct: 112 GPHGEMVGVMHDISAEVEARLELEAARRTQALLAEKAGIGVWSYEPETQRIDWAPDALAL 171

Query: 230 ---PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKK 286
               P  +       +        +               +                   
Sbjct: 172 MGVSPEDIATPELFLARLPENHRAEVQAAFVHAARTGEGGTLEYRLRANDGRWFTLRATY 231

Query: 287 QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYAN 345
           +      +         +  +           E      ++  P    VY     L   +
Sbjct: 232 RTEARPGSGFALKGVSQNITDVARSRDKAIWSERRARRLIEDAPFAVAVYDVDMRLRMVS 291

Query: 346 PSFLLLTKYKSVDDIEIA-----GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400
           P FL + +      I         G             +     ++ R +     A    
Sbjct: 292 PRFLEIFRSTEAQVIGKTLTELTNGTRRRFVNRVARALSGE---VVTRREDRLYDAEGVE 348

Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
              +W                +   E +       E       +R+      +L   L A
Sbjct: 349 RAFRWEARPW----------RDVAGEIVGVITYMDEITALTEARREARNNARRLKVALGA 398

Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP-FTVFLEQNTPSVMNHYLTEILSL 519
              G+  I+ E      +    ++ G  +E    +      +     + +          
Sbjct: 399 ARAGVYEIDHEKQAFWGSPEFHRMMGRRIEYQDVREGIWPMVHPEDLTQLYETAATWRRE 458

Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAK 575
             R   E      +   +    R+  +               + DI E K+ +  L  A+
Sbjct: 459 GRRTPQEHEVRLLSPGGEARWARVFHEVRRDGQGKALKAVGLILDIDEKKKAELALIEAE 518

Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
           + A+  +  K+ FLA +SHEIRTP+  ++G   V+K +    L         N    +G 
Sbjct: 519 RAAQAANEAKAQFLANMSHEIRTPMNGVLGVMHVLKRE----LPPGDSASLLNEALAAGQ 574

Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695
           ++  +++D++DIS+IE+G+++L+ EPV   + V     L+   A  K + +     +++ 
Sbjct: 575 MLSTLLDDVIDISRIEAGRLDLNHEPVDPRDLVRGVARLLATQAAHKGLRLELDLPDDLG 634

Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT---SNEEVILRVRDTGVGMTNYE 752
            I  D   V+Q   N++ NA+ FT  G  + +        +   ++  + DTGVG+    
Sbjct: 635 WIETDPTRVRQALFNLIGNAVKFTLKGS-VTVRAQRRITDAGPYLVFDIIDTGVGVPLEA 693

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF---P 809
            ++  + F Q       R  G+GLGL + + +     G+    S P +G+   +     P
Sbjct: 694 QKRLFERFQQADAGTTRRFGGSGLGLAITRKLARMLGGEVSFRSVPGEGSTFSLTIAAPP 753

Query: 810 LYDTSH 815
           +   S 
Sbjct: 754 VGPPSA 759


>gi|307719332|ref|YP_003874864.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Spirochaeta
           thermophila DSM 6192]
 gi|306533057|gb|ADN02591.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Spirochaeta
           thermophila DSM 6192]
          Length = 1078

 Score =  359 bits (921), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 108/532 (20%), Positives = 196/532 (36%), Gaps = 26/532 (4%)

Query: 285 KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFY 343
                  L       F                  E      ++   +    +     +  
Sbjct: 280 ATWITDALGRRKGTLFHLSDITAEREAVNTLALRERQYRNVLENITVGVMLINREYVVRA 339

Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403
            N                  G                 +   L     +       +   
Sbjct: 340 WNRRMEEWFPGIP------WGKEGVRCVEICKGPVLPCEECPLPPVFASGKTQRREVRRH 393

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
               E   +M   P    +          +  +    R     +E    +   ++ A++D
Sbjct: 394 TEEGERIFSMVATPHL--DDEGVIRGVVVLLEDVTAERRATEGLE----RYKFMVNASAD 447

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS-VMNHYLTEILSLDLR 522
            +++I+ +    + N A  K  G   ED + +       + T    +  Y+      +  
Sbjct: 448 FMSLISSDFRYEAVNDAFCKAHGRGREDFVGRRVADLWGEETFRGKILPYIRRAFEGERV 507

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM-HDISEWKQEKNKLSHAKKIAEKE 581
              ++   G   E + L +     +      +   +  DI+ +K    +L  A++ AE+ 
Sbjct: 508 VVEDRFVFGLLGE-RDLEVSYNPYREGDRITHVAVVTRDITSYKDALRRLEDARRQAEEA 566

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
           S  KS FLA +SHEIRTPL AI G S+++   R  P       E    I  S   +L ++
Sbjct: 567 SRAKSAFLASMSHEIRTPLNAITGMSDLLLLSRVSP----EVEEGLAIIKDSAGTLLALI 622

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-AD 700
           ND+LD+S+IE+G++ L   P+   + V     + +  A  K +      +  +P ++  D
Sbjct: 623 NDILDLSRIEAGRIELERIPLRFPDLVRHTWEMFRPQAETKGLSFELRLSEGLPPVVNGD 682

Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTT----HTSNEEVILRVRDTGVGMTNYELEKA 756
              ++QI +N+LSNA+ FT  GG + +S T    +  + EV L V DTG+G+   +LE+ 
Sbjct: 683 PVRIRQILINLLSNALKFTEEGG-VTLSVTGHRMYDRDWEVELVVEDTGIGIPPEKLERI 741

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            +PF Q  +S   R  GTGLGL +++ + +   G   + S   +G+      
Sbjct: 742 FEPFTQADSSITRRYGGTGLGLSISRQLAEMMGGTIVVSSEVGRGSTFVCRI 793



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 45/368 (12%), Positives = 100/368 (27%), Gaps = 26/368 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +DA   ++ I++   + +G+ + ++ G  + DV     + P +     ++R     G T 
Sbjct: 218 LDATDRIRFINKACERLVGHASQEVRGKEI-DVLFPGGLFPLSLRAH-MERFEIQVGSTL 275

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                        ++ A  I        G   F +  +         L  R  +  + L 
Sbjct: 276 F------------EVHATWITDALGRRKGTL-FHLSDITAEREAVNTLALRERQYRNVLE 322

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPH-LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
            I  G   + +E       +        +      +      K  VL  E+ PL     S
Sbjct: 323 NITVGVMLINREYVVRAWNRRMEEWFPGIPWGKEGVRCVEICKGPVLPCEECPLPPVFAS 382

Query: 268 S-LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
                +E        +           ++       +      +      EG       V
Sbjct: 383 GKTQRREVRRHTEEGERIFSMVATPHLDDEGVIRGVVVLLEDVTAERRATEGLERYKFMV 442

Query: 327 DKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
           +        + S       N +F         D +     ++ L             P +
Sbjct: 443 NASADFMSLISSDFRYEAVNDAFCKAHGRGREDFVGRR--VADLWGEETFRGKIL--PYI 498

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
               +   +    R        E  L +++ P+ + ++         +  +    +   R
Sbjct: 499 RRAFEGERVVVEDR-FVFGLLGERDLEVSYNPYREGDR---ITHVAVVTRDITSYKDALR 554

Query: 446 KMEIEVMQ 453
           ++E    Q
Sbjct: 555 RLEDARRQ 562



 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/465 (7%), Positives = 102/465 (21%), Gaps = 42/465 (9%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNT 142
           F   I +    + +++   K  G      +G R+ D+            +I    + +  
Sbjct: 448 FMSLISSDFRYEAVNDAFCKAHGRGREDFVGRRVADLWGEETFRGKILPYIRRAFEGERV 507

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
                 ++ + G      ++++  P    +R  +      +        D     +   +
Sbjct: 508 VVEDRFVFGLLGE---RDLEVSYNPYREGDR-ITHVA--VVTRDITSYKDALRRLEDARR 561

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQ---------------SPPPHLRMKNKVSSLTEYY 247
           +       K    +    +                           L +    +      
Sbjct: 562 QAEEASRAKSAFLASMSHEIRTPLNAITGMSDLLLLSRVSPEVEEGLAIIKDSAGTLLAL 621

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
            +    L   +   +  E   L   +           + +  G                 
Sbjct: 622 INDILDLSRIEAGRIELERIPLRFPDLVRHTWEMFRPQAETKGLSFELRLSEGLPPVVNG 681

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
            P          NL    +          S       +  + +    +          L 
Sbjct: 682 DPVRIRQI--LINLLSNALKFTEEGGVTLSVTGHRMYDRDWEVELVVEDTGIGIPPEKLE 739

Query: 368 TLLDAPKLSDNNAIKP-------VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
            + +    +D++  +        + + R     +  +  + +        +    +   +
Sbjct: 740 RIFEPFTQADSSITRRYGGTGLGLSISRQLAEMMGGTIVVSSEVGRGSTFVCRIVLEEAE 799

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
               P    Q       +   + +    +  +    +LE     + +           R 
Sbjct: 800 GEAAPPAKGQVSRASRAMRVLVVEDN-RVNALVARRLLEHLGHRVLVAGSG-------RE 851

Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
              L G    D +     +             +    + +  + +
Sbjct: 852 ALDLLGREEVDAVFMDVEM--PGMDGFECARRIRAGEAGERARVV 894


>gi|37523781|ref|NP_927158.1| two-component hybrid sensor and regulator [Gloeobacter violaceus
           PCC 7421]
 gi|35214786|dbj|BAC92153.1| two-component hybrid sensor and regulator [Gloeobacter violaceus
           PCC 7421]
          Length = 686

 Score =  359 bits (921), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 98/553 (17%), Positives = 203/553 (36%), Gaps = 73/553 (13%)

Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
           L A   +        +D+  I     + G + Y N  F  +++Y   + +      +  +
Sbjct: 11  LHATLLKELADIKFALDQSSIVAITDAAGLIVYVNDKFCEISQYSRAELLGQ----NHRI 66

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
                  +   + +    +         R         +   +        +    +   
Sbjct: 67  VNSGFHPSAFFENLWQTIAGGKVWRGEIRNRA---KDGSIYWVDTTIVPFLDHRGHSYQY 123

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCS---------------------------------- 456
             I  +  + +  +  +     +L                                    
Sbjct: 124 VSIRNDITERKRVEEALRQAKDELERRVAERTDDLSTANARLHGELAERRRAEKAIELLS 183

Query: 457 -----ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE-----QNTP 506
                IL +  +GI  ++ +G +   N A +++ G  V ++L +PF   L          
Sbjct: 184 HQNELILNSAGEGIVGLDLQGRVAFVNPAGARMLGCEVHELLGQPFHERLPGGWTAPPAY 243

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISE 563
            + +  L   L       +  I  G  ++     +  +   +          +T  DI+E
Sbjct: 244 RMSDIPLYASLIDASVHRVGSICFGR-RDGSSFPVEYVSTPILEQGQTLGAVITFRDITE 302

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            +  +                K++F++ VSHE+RTPLT+I G   +          + + 
Sbjct: 303 RQAVE--------------RLKAEFVSVVSHELRTPLTSIRGALGL-LTGGLLGPLSEKG 347

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
               +    + + ++ ++ND+LD+ ++ESGK+ L      L E ++++  L+Q  A +  
Sbjct: 348 RRMLDIAIANTDRLVRLINDILDVERMESGKVILVRRRCDLAELLTQSADLMQSMAQQGG 407

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
           +++     +    + AD   + Q   N++SNAI F+P+G  + +S       +V +RV D
Sbjct: 408 VMLLCE--SKSAPLWADPDRLIQTFTNLISNAIKFSPAGSTVRVSAAC-DGPQVQVRVVD 464

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
            G G+   +LE   + F Q+  S   +  GTGLGL + +++V  + G+ +  S P KG+ 
Sbjct: 465 QGRGIPAEKLESIFERFQQVDASDSRKKGGTGLGLAICRSIVLQHGGRLWAESAPGKGST 524

Query: 804 IEIIFPLYDTSHP 816
             +  PL     P
Sbjct: 525 FVLTLPLAVGETP 537



 Score = 65.8 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 38/388 (9%), Positives = 105/388 (27%), Gaps = 34/388 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147
            DA G +  ++++  +       +++G     V+   H      ++   +     W G+ 
Sbjct: 35  TDAAGLIVYVNDKFCEISQYSRAELLGQNHRIVNSGFHPSAFFENLWQTIAGGKVWRGEI 94

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                +G+  +V   +  +P          ++   I +            +    K    
Sbjct: 95  RNRAKDGSIYWVDTTI--VPFLDHRGH--SYQYVSIRNDITERKRVEEALR--QAKDELE 148

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
             + +    +      +  +       R   K   L  +              L ++ E 
Sbjct: 149 RRVAERTDDLSTANARLHGE---LAERRRAEKAIELLSHQNELI---------LNSAGEG 196

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
            +          +N    +     +     + F         +  AY      L    +D
Sbjct: 197 IVGLDLQGRVAFVNPAGARMLGCEVHELLGQPFHERLPGGWTAPPAYRMSDIPLYASLID 256

Query: 328 KCPIPFFVYSHGNLFYANPSFLLL-TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
                  V+  G++ +          +Y S   +E    L  ++    +++  A++ +  
Sbjct: 257 AS-----VHRVGSICFGRRDGSSFPVEYVSTPILEQGQTLGAVITFRDITERQAVERLKA 311

Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM------PQNGIEPEDVDT 440
                        L +I+            P  +  +   ++          +  + +D 
Sbjct: 312 EFVSVVSHELRTPLTSIRGALGLLTGGLLGPLSEKGRRMLDIAIANTDRLVRLINDILDV 371

Query: 441 RINKR---KMEIEVMQLCSILEATSDGI 465
              +     +      L  +L  ++D +
Sbjct: 372 ERMESGKVILVRRRCDLAELLTQSADLM 399


>gi|146281507|ref|YP_001171660.1| sensor histidine kinase/response regulator [Pseudomonas stutzeri
           A1501]
 gi|145569712|gb|ABP78818.1| sensor histidine kinase/response regulator [Pseudomonas stutzeri
           A1501]
          Length = 1239

 Score =  359 bits (921), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 124/664 (18%), Positives = 259/664 (39%), Gaps = 48/664 (7%)

Query: 171 RNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP 230
           ++     F  +        +++ +            L ++ +G          +    + 
Sbjct: 202 QSGVLLFFPLYAQAAPVTTEDERQRAFIGTLHGAFRLTDLMEGILGSRSRMLQLQLFDAA 261

Query: 231 PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG 290
            P   +    + ++     +              + +S PE E     N   +       
Sbjct: 262 SPDSPLLTGRAQVSADAKFQRIRNIYMYGRSWQLQVASTPEYEAVLRDNNRAFNLAAALT 321

Query: 291 TLQNNSKESFEYL-----SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYA 344
                S     YL     + R+  +LS    E E    + +++ P+   + +  G +  A
Sbjct: 322 AAVLFSLLVGGYLYLRERALRSSQALSLQLQEREARFRQLIEQLPVATLLCNAGGRIELA 381

Query: 345 NPSFLLLTKYKSVDDIEIAGG--LSTLLDAPKLSDNNAIKPVMLY--RSDRTCIAASARL 400
           N S   L    +           +  +L    L        + L   R D T I  +  L
Sbjct: 382 NQSAGQLLGGPADLLAGERVSRYVPGVLGEQILRQLRDTTQLELQAQREDGTPIPVAVSL 441

Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
            + + +      +  +  +   +                             +  +++EA
Sbjct: 442 TSFRHDDALYYVINLLDLQARKRDD--------------------------ERFRNVVEA 475

Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520
           + +   +++ +G I+  NR    LFGY  +++L +P  + L +                 
Sbjct: 476 SPNAFVLVDTQGSIVMVNRQTELLFGYTRQELLGQPVELLLPEALRDAHRGLRQGYTEHP 535

Query: 521 LRQTL--EKITLGSTKEEKLLSLRI--IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKK 576
             + +   +   G  ++   L + I     +          + DIS  K  + +L     
Sbjct: 536 EPRRMGSNRELFGLHRDGSALPVEIGLSPLRSGDEQLVQAVIIDISHRKAAERRLREQAD 595

Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
                + +KS+FLA +SHE+RTPL +I+  S+ ++    G L N + + +A+ I R+G+ 
Sbjct: 596 QLAVANRYKSEFLANMSHELRTPLNSILILSDQLRQNGAGNL-NDKQVRHADIIHRAGHE 654

Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP- 695
           +L ++ND+LD++KIESG M L  EP++L + + +  + +   A +K + +       +P 
Sbjct: 655 LLQLINDVLDLAKIESGHMQLKLEPLNLRDLLRDLEASLGSMAAQKGLSLTMEVDPAVPL 714

Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-----VILRVRDTGVGMTN 750
            + +D   ++QI  N+L+NA+ FT  G Q+ ++ +    ++     + L+VRD+G+G+  
Sbjct: 715 TLNSDRARLQQILNNLLTNALKFTEKG-QVELTASLLPADQDGRQMLQLQVRDSGIGIAK 773

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            + E+  + F QI  S      GTGLGL + + +V+   G+  + S   +G    ++ P+
Sbjct: 774 DQQERIFQAFQQIDGSISRHYGGTGLGLAITRQLVEVLGGQVMVNSELGQGATFTVLLPV 833

Query: 811 YDTS 814
              +
Sbjct: 834 VSDA 837



 Score = 45.4 bits (106), Expect = 0.036,   Method: Composition-based stats.
 Identities = 20/273 (7%), Positives = 75/273 (27%), Gaps = 20/273 (7%)

Query: 70  SENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP 129
            +  F          F   +D  G +  ++ +     G    +++G  +  +      D 
Sbjct: 465 DDERFRNVVEASPNAFVL-VDTQGSIVMVNRQTELLFGYTRQELLGQPVELLLPEALRDA 523

Query: 130 NNHIGDLL----KRQNTWYGKTTL-WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIV 184
           +  +        + +     +       +G+   +P+++   P+ S + +        ++
Sbjct: 524 HRGLRQGYTEHPEPRRMGSNRELFGLHRDGSA--LPVEIGLSPLRSGDEQLVQA----VI 577

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS-L 243
                        +    + +  +  K    +    +             +++   +  L
Sbjct: 578 IDISHRKAAERRLREQADQLAVANRYKSEFLANMSHELRTPLNSILILSDQLRQNGAGNL 637

Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSL-------PEQEDFHTINLNQYTKKQYFGTLQNNS 296
            +      D++    + LL      L          +        +   +    +L + +
Sbjct: 638 NDKQVRHADIIHRAGHELLQLINDVLDLAKIESGHMQLKLEPLNLRDLLRDLEASLGSMA 697

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
            +    L+    P++    +       + ++  
Sbjct: 698 AQKGLSLTMEVDPAVPLTLNSDRARLQQILNNL 730


>gi|261250888|ref|ZP_05943462.1| hypothetical protein VIA_000906 [Vibrio orientalis CIP 102891]
 gi|260937761|gb|EEX93749.1| hypothetical protein VIA_000906 [Vibrio orientalis CIP 102891]
          Length = 1053

 Score =  359 bits (921), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 102/378 (26%), Positives = 182/378 (48%), Gaps = 15/378 (3%)

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
           +  +  R ++       +I+E     +AII+ +  I+  N+   + +GY  +++  +   
Sbjct: 150 EIELRTRDLQANEALSRTIIEGAPSSVAIIDSQQRIILWNKTAEETYGYSFDEVEGQNLC 209

Query: 499 VFLEQNTPSVMNHYLTEILSLDLR---QTLEKITLGSTKEEKLLSLR--IIIKKLPFSSC 553
             L+ + P  +   L+  LS+D +             T +  ++ +   I I        
Sbjct: 210 DLLQIDLPEELRDVLSGELSIDDQIKVSGGFFEVETYTSQGHMIPIDLGITIFLFDEQCR 269

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
            ++ + D++  K  +++L+ A+  AE+    KS FLA +SHEIRTP+ AIIG S +    
Sbjct: 270 AAMFLRDVTSRKIVEDELNKARSKAEEAVEVKSMFLANMSHEIRTPMNAIIGMSHLALKT 329

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
              P    +  +Y   I  S +L+L I+ND+LD SKIE+GK+++      LD+ +     
Sbjct: 330 DLTP----KQHDYILKIHNSASLLLGIINDILDFSKIEAGKLSIEHIEFHLDDVLHNVSM 385

Query: 674 LVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTH- 731
           +    A EK + +      N+P++L  D   + QI +N+++NA+ FT  G +I +  T  
Sbjct: 386 VTGQKAFEKGLELIFQIDRNVPKVLFGDPLRLGQIIINLVNNAVKFTDQG-EITVHVTKK 444

Query: 732 ---TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                  E+   V+DTG+GM+  + EK    F Q   S   R  GTGLGL + + +V+  
Sbjct: 445 PYSEEKIELNFTVQDTGIGMSPEQSEKLFSAFTQADGSTTRRYGGTGLGLSICRRLVELM 504

Query: 789 MGKFYIFSTPAKGTLIEI 806
            G  ++ S   KG+  + 
Sbjct: 505 GGDIHVESAVGKGSQFKF 522



 Score = 38.1 bits (87), Expect = 7.0,   Method: Composition-based stats.
 Identities = 21/151 (13%), Positives = 42/151 (27%), Gaps = 22/151 (14%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID+   +   ++   +T G    ++ G  LCD+   L ID    + D+L  + +      
Sbjct: 179 IDSQQRIILWNKTAEETYGYSFDEVEGQNLCDL---LQIDLPEELRDVLSGELS---IDD 232

Query: 149 LWPIEGTNLYVPIDLA---ALPI--------YSRNREFSGFRGFGIVHVNRVDNDPRALG 197
              + G    V    +    +PI        +         R    +             
Sbjct: 233 QIKVSGGFFEVETYTSQGHMIPIDLGITIFLFDEQ-----CRAAMFLRDVTSRKIVEDEL 287

Query: 198 KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228
            +   K     E+K    +    +       
Sbjct: 288 NKARSKAEEAVEVKSMFLANMSHEIRTPMNA 318


>gi|170725869|ref|YP_001759895.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
 gi|169811216|gb|ACA85800.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
          Length = 1480

 Score =  359 bits (921), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 104/490 (21%), Positives = 191/490 (38%), Gaps = 19/490 (3%)

Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
           +D+  I       GN+ Y N  F  ++ Y+  + I    G +  L        +    + 
Sbjct: 445 LDQHAIVAVTDLKGNITYINRRFSEISGYQEEELI----GKNHRLLNSGRHPRSFFIQMY 500

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
              S      A            +   +        N   +      I  +    ++ + 
Sbjct: 501 SVISKGEVWNAEICNRA---KDGSYYWVDTTIVPFTNAEGKPESYIAIRTDITTRKLAEI 557

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           K +  +  + S+LE+T +GI + + +G IL  N + + L+   V+  L         ++ 
Sbjct: 558 KTKEALSLMHSMLESTDNGILVTSLDGKILQFNESYAALWDIEVKTGLDHREFELKNRDK 617

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL-SLRIIIKKLPFSSCYSLTMHDISEW 564
                  +  I SL      E   +    + ++   + + +K          + HDIS+ 
Sbjct: 618 ILDYQGVIERIASLYSEPDFEGFDILELTDGRIYERVSLPMKSDEGLLGRVWSFHDISKR 677

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
            + +N+L  AK+ A+     KS+FLA +SHEIRTP+  ++G   ++ N +          
Sbjct: 678 MKTQNELILAKEEADLAVKAKSEFLASMSHEIRTPMNGVLGMLGLLNNTQL----TDYQK 733

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
              +    S   +L ++ND+LD SKI++GK+ L     +L   + E    +   A  K +
Sbjct: 734 RRVSIAQSSAKSLLTLINDILDYSKIDAGKLELENLDFNLRGMLGEFAEGMAFQAQNKSL 793

Query: 685 LIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-EVIL--R 740
            +           +  D   ++Q   N++ NAI FT  G +++I      +  E      
Sbjct: 794 ELVLDLKGIEHSMVTGDPSRLRQALTNLVGNAIKFTSKG-EVLIEAGLRDSGDEWCFWCV 852

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           + DTG+G+   ++      F Q+  S   +  GTGLGL + + +     G   I S   K
Sbjct: 853 ITDTGIGIAADKISSLFDSFSQVDASTTRKYGGTGLGLAIVQKICQLMGGDVSITSEVGK 912

Query: 801 GTL--IEIIF 808
           GT     I  
Sbjct: 913 GTRVEFTIYL 922



 Score = 62.7 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/226 (11%), Positives = 62/226 (27%), Gaps = 7/226 (3%)

Query: 68  LDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI 127
           L++     F      +      D  G +  I+    +  G    ++IG     ++   H 
Sbjct: 435 LNNLEDQKFALDQHAIVAV--TDLKGNITYINRRFSEISGYQEEELIGKNHRLLNSGRHP 492

Query: 128 DP-NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHV 186
                 +  ++ +   W  +      +G+  +V   +  +P  +   +   +    I   
Sbjct: 493 RSFFIQMYSVISKGEVWNAEICNRAKDGSYYWVDTTI--VPFTNAEGKPESY--IAIRTD 548

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY 246
                      K        + E       V      I         L      + L   
Sbjct: 549 ITTRKLAEIKTKEALSLMHSMLESTDNGILVTSLDGKILQFNESYAALWDIEVKTGLDHR 608

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL 292
                +  K   Y  +    +SL  + DF   ++ + T  + +  +
Sbjct: 609 EFELKNRDKILDYQGVIERIASLYSEPDFEGFDILELTDGRIYERV 654


>gi|298244532|ref|ZP_06968338.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297552013|gb|EFH85878.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 856

 Score =  359 bits (921), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 108/741 (14%), Positives = 242/741 (32%), Gaps = 64/741 (8%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDV---SDILHIDPNNHIGDLLKRQNTWYGKT 147
             G + +I++           ++IG    D    S    +            +       
Sbjct: 151 PEGLVLDINQRPLADAHLQREEVIGKPFADSPAWSHDPAVQQQLRAAIARASRGETVRFE 210

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                  ++L + I +        +++       G               + L       
Sbjct: 211 ARIHPR-SDLSLDILMTITSHRDTSQQVEYLICAG--RDITERKRIEDELRTL------- 260

Query: 208 HEIKKGHSSVEKEKYDIFSQQSP--PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
            +       + +    +              + +V   +       D  +       T+ 
Sbjct: 261 VDAIPHFVWIARPDGHVIYNNQRLIDYLAIPREQVEGDSWIATVHPDDQQRVWDVWQTAI 320

Query: 266 ESSLPEQEDFHTINL---NQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
           +  +P + +    +                +N       ++            ++    +
Sbjct: 321 QRGVPYEVEHRMQDGISGAYRWFLVRGMPQRNAEGTILHWIGTCTDIDKQKQAEQRIKAS 380

Query: 323 PE----TVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
            E      +  P   +     G L Y N  +   T + + + ++  G          L  
Sbjct: 381 EENLRVLAETVPQLVWTTRPDGRLDYCNQRYCEYT-HATFEQLQGYGW------RQFLHP 433

Query: 378 NNAIKPVMLYR---SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
            +  + + L     +         RL   Q                 ++  + +   G  
Sbjct: 434 EDVERSLALRHHTLATGEPFECEHRLRNGQ--AGEYRWFLARAMPVRDETGQIVKWFGTN 491

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG---IILSTNRAVSKLFGYPVED 491
            +  + +  +  +     ++ +++++   GI   + EG   +++  N A   + GY  ED
Sbjct: 492 TDIEEQKRTEEALRQSQERIRALIDSNIIGI--TSNEGEEEVLVDANDAFLHMTGYTRED 549

Query: 492 ILRKPFTVF--LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
           +  +  +           +    L E+ +      +E   +   K+   L +        
Sbjct: 550 LNSRTLSRMKITPPEHAPLFQRVLQEVATHGQHTPMETELVC--KDGSRLPILAGAVTFQ 607

Query: 550 FSSC-YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                    + D S  K+ + +              K DF++  SHE+R+PLTA+   + 
Sbjct: 608 DHPRQMIGFVLDNSARKELEQR--------------KDDFISMASHELRSPLTALKMHT- 652

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
            +  ++    G        + ++   N V  +V +LLD+SKI++G++    E V LD  +
Sbjct: 653 SLLRRQLAMQGFQTSAPALSSMETQINKVTRLVEELLDVSKIQAGRLEYRQETVDLDALL 712

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
            E    +Q       IL+R +   N+   +AD   + Q+  N++SNAI ++P    + + 
Sbjct: 713 REIADTMQQTHPSHSILVRGAVQANL---MADRDRLGQVFTNLISNAIKYSPGAETVEMD 769

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
              +    V +RVRD G+G+   + +K  + F ++   +Q    G G+GL +   +V  +
Sbjct: 770 LEASPE-TVTIRVRDHGLGIPREQRDKIFERFYRVTGPKQKAIPGLGMGLYIVAEIVKRH 828

Query: 789 MGKFYIFSTPAKGTLIEIIFP 809
            G   + S   KG++  +  P
Sbjct: 829 GGTITVESAVGKGSIFTVTLP 849



 Score =  127 bits (318), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 44/507 (8%), Positives = 120/507 (23%), Gaps = 34/507 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWY 144
            + +D    +   +      IG     + G  L   +  L        +    + + +  
Sbjct: 29  LFLLDDDATIVYANAHAQAMIGATRDDVCGKPLWRGAPQLVSTSLYQAVQKAKQTRES-T 87

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
               + P   + L+  +          +    G   F           P+    R +  +
Sbjct: 88  EVEYISPGTNSWLHAWL----------SPTNEGLSIF--FQEYLEPRSPQNAFSRNEHMY 135

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
             L E      ++   +  +      P  L   +            D    +    +   
Sbjct: 136 RDLLESFSDGVTILTPEGLVLDINQRP--LADAHLQREEVIGKPFADSPAWSHDPAVQQQ 193

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP------SLSAYFDEG 318
             +++       T+        +   +L      +    + +                  
Sbjct: 194 LRAAIARASRGETVRFEARIHPRSDLSLDILMTITSHRDTSQQVEYLICAGRDITERKRI 253

Query: 319 ENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
           E+     VD  P   ++         N   L+       + +E    ++T+    +    
Sbjct: 254 EDELRTLVDAIPHFVWIARPDGHVIYNNQRLIDYLAIPREQVEGDSWIATVHPDDQQRVW 313

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
           +  +  +        +                         + N     +   G   +  
Sbjct: 314 DVWQTAIQR-----GVPYEVEHRMQDGISGAYRWFLVRGMPQRNAEGTILHWIGTCTDID 368

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
             +  +++++     L  + E     +     +G +   N+   +      E +    + 
Sbjct: 369 KQKQAEQRIKASEENLRVLAETVPQLVWTTRPDGRLDYCNQRYCEYTHATFEQLQGYGWR 428

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE-EKLLSLRIIIKKLPFSSC---- 553
            FL               L+       E        +  +          +   +     
Sbjct: 429 QFLHPEDVERSLALRHHTLATGEP--FECEHRLRNGQAGEYRWFLARAMPVRDETGQIVK 486

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEK 580
           +  T  DI E K+ +  L  +++    
Sbjct: 487 WFGTNTDIEEQKRTEEALRQSQERIRA 513



 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 33/389 (8%), Positives = 90/389 (23%), Gaps = 29/389 (7%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD-LLKRQNTW 143
           F W     G++   ++ L   +     ++ G                 +    ++R   +
Sbjct: 267 FVWIARPDGHVIYNNQRLIDYLAIPREQVEGDSWIATVHPDDQQRVWDVWQTAIQRGVPY 326

Query: 144 YGKTTLWPIEG-TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
             +      +G +  Y    +  +P  +       +   G               K  ++
Sbjct: 327 --EVEHRMQDGISGAYRWFLVRGMPQRNAEGTILHW--IGTCTDIDKQKQAEQRIKASEE 382

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPP-----PHLRMKNKVSSLTEYYAHKDDVLKTE 257
               L E         +    +                           +    +     
Sbjct: 383 NLRVLAETVPQLVWTTRPDGRLDYCNQRYCEYTHATFEQLQGYGWRQFLHPEDVERSLAL 442

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP----SLSA 313
           ++  L + E    E    +               +++ + +  ++               
Sbjct: 443 RHHTLATGEPFECEHRLRNGQAGEYRWFLARAMPVRDETGQIVKWFGTNTDIEEQKRTEE 502

Query: 314 YFDEGENLTPETVDKCPIPFFVYSHGN--LFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
              + +      +D   I           L  AN +FL +T Y   D    +  LS +  
Sbjct: 503 ALRQSQERIRALIDSNIIGITSNEGEEEVLVDANDAFLHMTGYTREDL--NSRTLSRMKI 560

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
            P        + +    +          L  +  +      +                  
Sbjct: 561 TPPEHAPLFQRVLQEVATHGQHTPMETEL--VCKDGSRLPILAGAVT----FQDHPRQMI 614

Query: 432 GIEPEDVDTRINKRK----MEIEVMQLCS 456
           G   ++   +  +++    + +   +L S
Sbjct: 615 GFVLDNSARKELEQRKDDFISMASHELRS 643



 Score = 73.5 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 49/308 (15%), Positives = 92/308 (29%), Gaps = 46/308 (14%)

Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
           F +     + YAN     +      D              P+L   +  + V   +  R 
Sbjct: 30  FLLDDDATIVYANAHAQAMIGATRDDVCGKPLWRGA----PQLVSTSLYQAVQKAKQTRE 85

Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
                     I     + L     P         N   +    E ++ R  +        
Sbjct: 86  STEVE----YISPGTNSWLHAWLSPT--------NEGLSIFFQEYLEPRSPQNAFSRNEH 133

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
               +LE+ SDG+ I+  EG++L  N+          E+++ KPF      +    +   
Sbjct: 134 MYRDLLESFSDGVTILTPEGLVLDINQRPLADAHLQREEVIGKPFADSPAWSHDPAVQQQ 193

Query: 513 LTEILSLDLR-QTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM----HDISEWKQE 567
           L   ++   R +T+        + +  L + + I     +S     +     DI+E K+ 
Sbjct: 194 LRAAIARASRGETVRFEARIHPRSDLSLDILMTITSHRDTSQQVEYLICAGRDITERKRI 253

Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
           ++                         E+RT + AI  F  + +        N R I+Y 
Sbjct: 254 ED-------------------------ELRTLVDAIPHFVWIARPDGHVIYNNQRLIDYL 288

Query: 628 NYIDRSGN 635
                   
Sbjct: 289 AIPREQVE 296



 Score = 41.2 bits (95), Expect = 0.81,   Method: Composition-based stats.
 Identities = 10/70 (14%), Positives = 25/70 (35%)

Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
              + +++ +  I+  N     + G   +D+  KP      Q   + +   + +      
Sbjct: 26  PGALFLLDDDATIVYANAHAQAMIGATRDDVCGKPLWRGAPQLVSTSLYQAVQKAKQTRE 85

Query: 522 RQTLEKITLG 531
              +E I+ G
Sbjct: 86  STEVEYISPG 95


>gi|16079962|ref|NP_390788.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221310851|ref|ZP_03592698.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221315177|ref|ZP_03596982.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221320094|ref|ZP_03601388.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221324376|ref|ZP_03605670.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|130130|sp|P23545|PHOR_BACSU RecName: Full=Alkaline phosphatase synthesis sensor protein phoR
 gi|143331|gb|AAA22663.1| alkaline phosphatase regulatory protein [Bacillus subtilis]
 gi|2293271|gb|AAC00349.1| signal transduction protein kinase [Bacillus subtilis]
 gi|2635375|emb|CAB14870.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 579

 Score =  359 bits (921), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 88/372 (23%), Positives = 170/372 (45%), Gaps = 23/372 (6%)

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
           D     R  E++  +L +++E    G+ +I+  G I   NR+ +K F      +LR+ + 
Sbjct: 221 DLMEMTRTQEMQRDRLLTVIENIGSGLIMIDGRGFINLVNRSYAKQFHINPNHMLRRLYH 280

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSL 556
              E      +   + +I   + ++           E +   +  +    P        L
Sbjct: 281 DAFEHE---EVIQLVEDIFMTETKKCKLLRLPIKI-ERRYFEVDGVPIMGPDDEWKGIVL 336

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
             HD++E K+ +                + DF+A VSHE++TP+T+I GF+E + +    
Sbjct: 337 VFHDMTETKKLE--------------QMRKDFVANVSHELKTPITSIKGFTETLLDGAM- 381

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
                   E+ + I +    +  +V DLLD+SKIE     L  E     + + E  +L++
Sbjct: 382 -EDKEALSEFLSIILKESERLQSLVQDLLDLSKIEQQNFTLSIETFEPAKMLGEIETLLK 440

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
             A+EK I +  +   +   +  D   +KQ+ LN+++NA+ +TP GG + I+      + 
Sbjct: 441 HKADEKGISLHLNVPKDPQYVSGDPYRLKQVFLNLVNNALTYTPEGGSVAINVKPREKD- 499

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           + + V D+G+G+   E+ +  + F ++   +     GTGLGL + K +++A+ GK  + S
Sbjct: 500 IQIEVADSGIGIQKEEIPRIFERFYRVDKDRSRNSGGTGLGLAIVKHLIEAHEGKIDVTS 559

Query: 797 TPAKGTLIEIIF 808
              +GT+  +  
Sbjct: 560 ELGRGTVFTVTL 571


>gi|302390748|ref|YP_003826569.1| multi-sensor signal transduction histidine kinase
           [Thermosediminibacter oceani DSM 16646]
 gi|302201376|gb|ADL08946.1| multi-sensor signal transduction histidine kinase
           [Thermosediminibacter oceani DSM 16646]
          Length = 590

 Score =  359 bits (921), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 83/361 (22%), Positives = 174/361 (48%), Gaps = 25/361 (6%)

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
            E  ++ +IL   +DG+  +N  G ++  N A  ++     + +  + F   L +     
Sbjct: 251 EEKEKMEAILTNMADGVIALNGRGEVIHINPAARRMLQLEEDQL-GQDFAEKLREIFKIN 309

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568
              +          +  +   L   ++  L ++   +      + Y L + DI++ ++ +
Sbjct: 310 PEDF-------QKTEQTQLEVLVKVRDGTLKAIFAPLVGDGRVTGYILLLQDITKQQRLE 362

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
                           + +F+A VSHE+RTPLT I  ++E + +         R   + +
Sbjct: 363 E--------------MRKEFVANVSHELRTPLTTIKSYAETLLDGALDDSSVARQ--FLS 406

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I+   + +  +VNDLL++S++++ + N   +P+ +D  ++  IS + +   +K + +  
Sbjct: 407 VINDEADRMTRLVNDLLELSRLDNRETNWDKKPIRIDGVLTAVISKMMVSVRKKGLELEC 466

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748
               ++P++ AD   ++Q+  NILSNAI +TP GG+I +        +V + +RDTG+G+
Sbjct: 467 DLPEDLPKVFADSDKMEQVFQNILSNAIKYTPEGGRIFVKAE-NLGSQVQVSIRDTGIGI 525

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
              +L +  + F ++  ++  +  GTGLGL +A+ +V A+ G+  + S   +GT + I  
Sbjct: 526 PKEDLPRIFERFYRVDKTRSRQLGGTGLGLSIAREIVLAHEGEIKVESELGQGTEVIIKL 585

Query: 809 P 809
           P
Sbjct: 586 P 586


>gi|319405334|emb|CBI78952.1| two-component sensor histidine kinase [Bartonella sp. AR 15-3]
          Length = 769

 Score =  358 bits (920), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 126/506 (24%), Positives = 226/506 (44%), Gaps = 53/506 (10%)

Query: 342 FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401
            Y + +   +  Y+  + +     ++ ++D    +     + +M  +     I       
Sbjct: 281 VYWSRAMYEMLGYEPQNALLSISQITAIIDPKDANFFELAQELMDSKKKYIDINV----- 335

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
            ++  +   + M         + P      GI  +  +      +     +++   +E  
Sbjct: 336 PMRHAKGYYVWMRIRAEVTDEEEP---HLVGISFDISEQHQFVEQTAQADLRIRDAIENI 392

Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
           S+   + + EG ++ +N    +    P + +        +E  +   ++ Y  +I     
Sbjct: 393 SESFVLWDSEGRLVMSNSKFCEYAAIPKQMLQSGIERATVEAMSRPAISEYPLKIDETG- 451

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK----------- 570
                  ++  T +   L +    ++            DISE KQ++ K           
Sbjct: 452 ----NLTSIRQTADGYWLKIN---ERRTQDGGLVCVGTDISELKQQQEKFEDSERRLFSF 504

Query: 571 ------------------------LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
                                   L   K+ AE  +  KS+FLA +SHE+RTPL AI+GF
Sbjct: 505 IQELKRARGNAQQRATEVEKLNKSLQEEKERAESANKAKSEFLANISHELRTPLNAILGF 564

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
           SE++    FGPLG+ RY EY + I  SG  +L ++ND+LD+SKIE+G+  L  + ++L+ 
Sbjct: 565 SEIMLQSTFGPLGSQRYKEYVHDIHNSGTHLLTLINDILDMSKIEAGRFTLDRKNINLEP 624

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726
            +SE I  +   A  K+I + T+    +     D R++KQI LN++SNA+ FTPSGG I 
Sbjct: 625 IISETIRTLTPQAQAKKISLTTNIEQKL-HANVDCRAMKQIFLNLISNAVKFTPSGGSID 683

Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
           I      N  +I  ++DTGVG+    ++K  +PF Q+ N       G+GLGL +++++++
Sbjct: 684 IR-AFQKNNNLIFSIKDTGVGIPQEAIKKLGQPFEQVENQFTKTHPGSGLGLAISRSLLE 742

Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLYD 812
            + GK  I S  AKGT++ II P+  
Sbjct: 743 LHKGKLEITSKEAKGTIVTIIMPIQQ 768


>gi|163848601|ref|YP_001636645.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222526536|ref|YP_002571007.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl]
 gi|163669890|gb|ABY36256.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222450415|gb|ACM54681.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl]
          Length = 952

 Score =  358 bits (920), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 108/558 (19%), Positives = 214/558 (38%), Gaps = 28/558 (5%)

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
            ++    +   + ++   +   +      +      L    +  L     E      +  
Sbjct: 169 RAVASVAESDWLTVSPPWQTATYLVAIATTTLWTFGLILLVNQELVNRQHEAVQQLEQIF 228

Query: 327 DKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
              P    +     G     N  F  ++ Y + + I    G   L      S  +  +  
Sbjct: 229 AAQPDAVLLSRLTDGVFVKVNHGFTTISGYSADEAI----GKDALTLNLWRSPEDRRRWA 284

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
            + R +  C          + +      +           P       I  +  + +  +
Sbjct: 285 EIMRREGACSGMEFDFR--RRDGTFRTCILSSQVVMIRGVP---HAISIVHDISERKRME 339

Query: 445 RKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
             +     +   I E T+D I + +  +      + ++ KL GY   + L  P + FL+ 
Sbjct: 340 EALRRSDARYRLIAENTTDVIWLYDPFKSQFTFFSPSIEKLIGYSAAEALDLPLSAFLKP 399

Query: 504 NTPSVMNHYLTEIL-----SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---YS 555
           ++   +   L  +L      L              ++ +++   I+   +          
Sbjct: 400 DSIQHVKTALDYMLHEWEGELTNAPPWTAEIDLIHRDGQIVQAEIVTSFVRDEEGQLMVL 459

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
               DI+  KQ + +L  A++ AE  +  KS FLA VSHE+RTPL A++GF++++     
Sbjct: 460 GVARDITARKQTEIELRLARQQAEAANRAKSAFLANVSHELRTPLHAVLGFAQLMSRDDN 519

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
                    EY   I+R+   +L ++N++LD++KIESG+      P+ +   +++  +L 
Sbjct: 520 ---LTATQHEYLAIINRNSEHLLHLINEVLDLAKIESGRYTYTPNPLDVRRLLADLQALF 576

Query: 676 QLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
              A  K++ +  +    +P  I++D   ++ I +N+L NAI FT  GG + +    T  
Sbjct: 577 GPQAEAKQLQLIVTCEEQVPPMIVSDEAKIRHILINLLGNAIKFTH-GGSVRLR-ADTDK 634

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE-GTGLGLPLAKAMVDANMGKFY 793
           +++   V DTGVG++  E     +PF Q   +     + G GLGL ++        G   
Sbjct: 635 QQMYFIVEDTGVGISPLEQPYLFRPFFQGKQTANASSDTGVGLGLSISYEFARLIGGDLS 694

Query: 794 IFST-PAKGTLIEIIFPL 810
           ++S    +G    +  PL
Sbjct: 695 VYSAGEGQGARFTLTLPL 712



 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/288 (11%), Positives = 79/288 (27%), Gaps = 22/288 (7%)

Query: 58  NQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMR 117
           NQE V+  +    +   +F   P  V  +   D  G   +++       G  A + IG  
Sbjct: 210 NQELVNRQHEAVQQLEQIFAAQPDAVLLSRLTD--GVFVKVNHGFTTISGYSADEAIGKD 267

Query: 118 LCDVSDILHIDPNNHIGDLLKRQNTWYG-KTTLWPIEGTNLYVPIDLAALPIYSRNREFS 176
              ++     +      ++++R+    G +      +GT     +    + I       S
Sbjct: 268 ALTLNLWRSPEDRRRWAEIMRREGACSGMEFDFRRRDGTFRTCILSSQVVMIRGVPHAIS 327

Query: 177 GFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM 236
                 IVH            +R D ++  + E       +       F+  SP     +
Sbjct: 328 ------IVHDISERKRMEEALRRSDARYRLIAENTTDVIWLYDPFKSQFTFFSPSIEKLI 381

Query: 237 ---KNKVSSLTEYYAHKDDVLKT---------EKYPLLTSEESSLPEQEDFHTINLNQYT 284
                +   L      K D ++           ++    +       + D    +     
Sbjct: 382 GYSAAEALDLPLSAFLKPDSIQHVKTALDYMLHEWEGELTNAPPWTAEIDLIHRDGQIVQ 441

Query: 285 KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP 332
            +     +++   +    L      +     +    L  +  +     
Sbjct: 442 AEIVTSFVRDEEGQLM-VLGVARDITARKQTEIELRLARQQAEAANRA 488


>gi|254506216|ref|ZP_05118360.1| PAS fold family protein [Vibrio parahaemolyticus 16]
 gi|219551034|gb|EED28015.1| PAS fold family protein [Vibrio parahaemolyticus 16]
          Length = 1319

 Score =  358 bits (920), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 96/383 (25%), Positives = 179/383 (46%), Gaps = 12/383 (3%)

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
           +       R  ++K+  +      IL AT + +  ++  G  L+ N    ++FG  +++I
Sbjct: 454 LSQNVELQRKAEKKVLEQSQLNQEILNATPNPMYCLSPHGKYLTVNAKFCEMFGLTMQEI 513

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
           + +        +T  V      E+      +  E      + + + + +           
Sbjct: 514 VGRTPNEVFNASTGQVFTTVHQELRQTKGSRNYELSLCDGSSQNREMLVYEASFSNGDGE 573

Query: 553 --CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
                  + D++E KQ +N+L  AK++A+  S  K DFLA +SHEIRTP+ AI+G + + 
Sbjct: 574 ISGIVGILLDLTERKQFENELREAKELADAMSQAKGDFLANMSHEIRTPMNAILGMAHLA 633

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
            N       +P   +Y   I+ S   +L I+ND+LD SKIE+GK+ +     SLDE    
Sbjct: 634 LNTEL----DPSQKKYLTRINESAKNLLGIINDILDFSKIEAGKLTVESIDFSLDEVFDN 689

Query: 671 AISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
            +++V   A+EK +         +P  ++ D   + Q+ +N+ SN++ FT  G +I++S 
Sbjct: 690 LVNVVSYKAHEKGVEFLLDIDPKVPIGLVGDPLRLGQVLVNLCSNSVKFTEKG-EIVVSA 748

Query: 730 THTS----NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
                      +   V+DTG+G+   +++   + F Q  +S   +  GTGLGL ++K +V
Sbjct: 749 LVEQLDENRATIRFSVKDTGIGIAKEKIQHLFRAFSQADSSITRQFGGTGLGLSISKQLV 808

Query: 786 DANMGKFYIFSTPAKGTLIEIIF 808
           +   G+  + S+   G++     
Sbjct: 809 ELMGGELVVSSSEGTGSVFSFTI 831



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/143 (9%), Positives = 41/143 (28%), Gaps = 3/143 (2%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + +  HG    ++ +  +  G    +++G    +V +         +   L++      
Sbjct: 486 MYCLSPHGKYLTVNAKFCEMFGLTMQEIVGRTPNEVFNASTGQVFTTVHQELRQTKGSRN 545

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
                  +G++    + +      + + E SG    GI+             +   +   
Sbjct: 546 YELSLC-DGSSQNREMLVYEASFSNGDGEISGI--VGILLDLTERKQFENELREAKELAD 602

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQ 228
            + + K    +    +       
Sbjct: 603 AMSQAKGDFLANMSHEIRTPMNA 625


>gi|296122662|ref|YP_003630440.1| PAS sensor protein [Planctomyces limnophilus DSM 3776]
 gi|296015002|gb|ADG68241.1| PAS sensor protein [Planctomyces limnophilus DSM 3776]
          Length = 810

 Score =  358 bits (920), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 120/412 (29%), Positives = 199/412 (48%), Gaps = 20/412 (4%)

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
           E   +  +E   V+     R    EV +L  I   T++G+ I +R+G +   N   +++ 
Sbjct: 239 ERQLREAVESRAVELERQVRNRTSEVNRLAEIARRTANGVVITDRKGRVEWINEGFTRIC 298

Query: 486 GYPVEDILRK-PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
           GY +ED+  K P  V    NT  +    + + +   L  T  +  +  +K  +   +RI 
Sbjct: 299 GYTIEDLRGKKPGDVLQGPNTNPMAIQRIGDAIRQGLPVT--EEVVNYSKNGREYYIRIE 356

Query: 545 IKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEK-------ESSHKSDFLARVS 593
           I  L         +     DI+E  Q + +L    +  E+        +  K+DFLA +S
Sbjct: 357 IDPLRDERGEISGFMAIESDITEQHQHQEELKRHAEEMERLRNAAESANRAKTDFLANMS 416

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGP-LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           HEIRTP+TAI+G++E++          +   IE    I R+G+ +L+I+ND+LD+SKIE+
Sbjct: 417 HEIRTPMTAILGYTELLAENSDPAGTTSAERIECIETIRRNGDHLLEIINDILDLSKIEA 476

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNI 711
           G M +   P  L   V +  SL+Q  A  K I +R +    +P I   D   +KQI +N+
Sbjct: 477 GMMTVEKIPTDLAYLVKDVESLMQFKATRKGINLRLNLVEPLPTIIHTDPVRLKQILVNL 536

Query: 712 LSNAIHFTPSGGQIIISTTHTSN---EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
           L NAI FT  G ++ +     +N     +++ V DTG+GMT  ++ +    F Q   S  
Sbjct: 537 LGNAIKFTEHG-EVSMKVHTDANTFPGLIVIDVVDTGIGMTPQQMSQLFGAFVQADTSTT 595

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820
            +  GTGLGL ++K++     G   I S P KG++ ++         PH+ +
Sbjct: 596 RKFGGTGLGLRISKSLAQLLGGNITISSEPGKGSVFQLTISTGLAEAPHEVV 647



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 61/183 (33%), Gaps = 10/183 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN--HIGDLLKRQNTWYGK 146
            D  G ++ I+E   +  G     + G +  DV    + +P     IGD +++      +
Sbjct: 281 TDRKGRVEWINEGFTRICGYTIEDLRGKKPGDVLQGPNTNPMAIQRIGDAIRQGLPVTEE 340

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
              +   G   Y+ I++   P+     E SGF       +     +     + L +    
Sbjct: 341 VVNYSKNGREYYIRIEID--PLRDERGEISGFMA-----IESDITEQHQHQEELKRHAEE 393

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
           +  ++    S  + K D  +  S      M   +   TE  A   D   T     +   E
Sbjct: 394 MERLRNAAESANRAKTDFLANMSHEIRTPMTA-ILGYTELLAENSDPAGTTSAERIECIE 452

Query: 267 SSL 269
           +  
Sbjct: 453 TIR 455



 Score = 57.7 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 20/178 (11%), Positives = 51/178 (28%), Gaps = 9/178 (5%)

Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPS 347
               L+   +E+ E  +      +     E   L                 G + + N  
Sbjct: 234 ASKRLERQLREAVESRAVELERQVRNRTSEVNRLAEIARRTANGVVITDRKGRVEWINEG 293

Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
           F  +  Y  ++D+        L   P  +     +     R     +  +  +     N 
Sbjct: 294 FTRICGYT-IEDLRGKKPGDVL-QGPNTNPMAIQRIGDAIR---QGLPVTEEVVNYSKNG 348

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME---IEVMQLCSILEATS 462
                +        ++  E      IE +  +   ++ +++    E+ +L +  E+ +
Sbjct: 349 REYY-IRIEIDPLRDERGEISGFMAIESDITEQHQHQEELKRHAEEMERLRNAAESAN 405


>gi|189425048|ref|YP_001952225.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189421307|gb|ACD95705.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 1195

 Score =  358 bits (920), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 99/509 (19%), Positives = 199/509 (39%), Gaps = 28/509 (5%)

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365
            +  S+    +E +      +D   I       G+    N S+     Y ++D++     
Sbjct: 324 ASDESIRKLNEELDRFFSMALDMLCIA---DLDGHFKRLNRSWEETLGY-ALDELTGKQF 379

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
           L  +      +   A+  +   +           ++  +    +   + +         P
Sbjct: 380 LEFIHPDDIPATLAALSDLDANKQ------ILNFINRYRCKDGSYRWIEWR------STP 427

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
                     +  + +  +  +E     +  + +     +   +R+      N A  + F
Sbjct: 428 CANLIYAAARDITERKNAEAALEESERFMRVLTDIIPGMVGYWDRDLHNRFANIAYLEWF 487

Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
           G   E +        +     +    Y+   L    RQ  E+    +           I 
Sbjct: 488 GKTSEQMRGIHIRDLMGDELFAKNEPYMRAAL-NGERQRFERTLTKADGSIGYTWAHYIP 546

Query: 546 -KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
                    + + + DI+E K  + +L    K AE  +  KS+FLA +SHEIRTP+ AI+
Sbjct: 547 DIANGQVRGFFVLVSDITELKLTQLQLEQRTKEAEAANRAKSEFLANMSHEIRTPMNAIL 606

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           G + ++         +PR  ++   +  +   +++I+ND+LD SKIE+G++ +   P+S+
Sbjct: 607 GLTRLVLETEL----DPRQRDFLLKVYNASQALMEILNDILDYSKIEAGRVEIEQLPISV 662

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG 723
           +E V   + L +    EK +      A+++P +L  D   + Q+  N++ NA+ FT SG 
Sbjct: 663 EEVVRNTMGLFRAKIEEKGLATIMELASSLPAVLQGDPMRLSQVLNNLVGNAVKFTESG- 721

Query: 724 QIIISTTHTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
           +I I       +     +   V+DTG+G+   E  +  + F Q  ++   +  GTGLGL 
Sbjct: 722 EIRIMVEQIQEDCRTVTLCFSVQDTGIGLDKDETARLFQAFTQADSTISRKYGGTGLGLT 781

Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           + + +V    G   + S    G+    + 
Sbjct: 782 ICQRLVGLMGGSISVSSLKGVGSTFSFVI 810



 Score = 60.0 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/377 (11%), Positives = 98/377 (25%), Gaps = 41/377 (10%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGKTT 148
           D  G+ K ++    +T+G    ++ G +  +      I      + DL   +        
Sbjct: 351 DLDGHFKRLNRSWEETLGYALDELTGKQFLEFIHPDDIPATLAALSDLDANKQILNFINR 410

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +G+  Y  I+  + P  +          +          +  A  +  ++    L 
Sbjct: 411 YRCKDGS--YRWIEWRSTPCAN--------LIYAAARDITERKNAEAALEESERFMRVLT 460

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           +I  G                             L  +    + +       L+  E  +
Sbjct: 461 DIIPGMVGYWDRDLHNRFANIAY-----------LEWFGKTSEQMRGIHIRDLMGDELFA 509

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
             E      +N  +   ++       +   ++ +            F    +   E   K
Sbjct: 510 KNEPYMRAALNGERQRFERTLTKADGSIGYTWAHYIPDIANGQVRGFFVLVSDITEL--K 567

Query: 329 CPIPFFVYSHGNLFYANPS---FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
                          AN +   FL    ++    +    GL+ L+   +L        + 
Sbjct: 568 LTQLQLEQRTKEAEAANRAKSEFLANMSHEIRTPMNAILGLTRLVLETELDPRQRDFLLK 627

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
           +Y + +  +     +          + +  +P          M                 
Sbjct: 628 VYNASQALMEILNDILDYSKIEAGRVEIEQLPISVEEVVRNTMGLF-------------- 673

Query: 446 KMEIEVMQLCSILEATS 462
           + +IE   L +I+E  S
Sbjct: 674 RAKIEEKGLATIMELAS 690


>gi|296121904|ref|YP_003629682.1| PAS sensor protein [Planctomyces limnophilus DSM 3776]
 gi|296014244|gb|ADG67483.1| PAS sensor protein [Planctomyces limnophilus DSM 3776]
          Length = 895

 Score =  358 bits (920), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 125/805 (15%), Positives = 262/805 (32%), Gaps = 97/805 (12%)

Query: 56  DQNQESVSNTNYLDSENTFVFDPIPRTVRFT-WNIDAHGYLKEISEELPKTIGNYAFKMI 114
            Q   +VS+             P+   +    W  DA      ++    +  G    + +
Sbjct: 123 SQQVPAVSSCEPPACSTGSPCIPLIEQLPIIAWAADARNNCTYVNTFWHQFTGAAHHEHL 182

Query: 115 GMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNRE 174
           G    +      ++    I    + Q T   +  +   +G      ++ +  P  +++ +
Sbjct: 183 GQGWLNFIHPEDLE---RIRSADENQATSDLQYRIRRKDGE-YRWFLEFS-KPCVNQDGQ 237

Query: 175 FSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHS--SVEKEKYDIFSQQSPP- 231
             G+ G  I            +     K+   + E   G +    ++E        +   
Sbjct: 238 IDGYTGICI--DTTESLRESRVSVERKKQLRAMVEHAPGVAIQWFDREGRIQLWNAASTQ 295

Query: 232 -PHLRMKNKVSSLTEYYAHKDDV---LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287
                 +  +    +   H       L      ++ + +S  P +  FH  + +  T   
Sbjct: 296 MFGFTAEEAIGKTYDELIHTPAEFACLLKTLDEIVQTGQSIGPNEYQFHRKDGSTGTCLS 355

Query: 288 YFGTLQNNSKESFE---YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN---- 340
               + ++ ++       +             E E          P   F+         
Sbjct: 356 TLFCIPSHDEQPLFCCMDIDITERIQTENALRESEAKFRTLAKNFPDAIFILDPDESQLP 415

Query: 341 --LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY----------- 387
             + +AN +   +  Y+  + I     L+  +D    +D    +   L            
Sbjct: 416 LKIAFANDAVRTIHGYQPEELIGQ--SLAKKIDDAPTADQVPERISRLRKGEVLRFDATH 473

Query: 388 -RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
              D   I  S     I W+ +  L                    GI  +    +  +  
Sbjct: 474 IHRDGHTIPMSVTACMISWDGKTML-------------------LGINRDMSLQKAAEEA 514

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
                 +  S   +++ G+AI++ +G  L  N A+  + GY +E++    F         
Sbjct: 515 QRESEARFRSAFYSSATGMAIVSLKGEFLDANTALCSMLGYSLEELTSTSFPAITHPTEV 574

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDIS 562
               H +  ++  ++            ++   + + I    +  S      +   M D+S
Sbjct: 575 DRDIHAMKRLIRGEIP-FYTTEKRYRRQDGSYVPIYISAALVRNSHGDPAYFVSQMLDLS 633

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E K+ + +L   ++++           + +SH+    ++ I+G+ E +      P    +
Sbjct: 634 EKKRLEQELIQNQRLSV-----MKQMASGLSHDFNNLISVILGYCETLL---IRPDTTDQ 685

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                  I  +G+    ++  L+  S+    K  + FE ++L+  +     +V+     +
Sbjct: 686 QRSLILPIREAGHHASRMIRQLIAFSR----KQPVAFERINLNSIIRSMEMMVRGIL-RQ 740

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH----------- 731
             ++    A  +P I+AD   + QI +N+  NA    P GG   I T             
Sbjct: 741 NFVLDLRLAELLPNIMADPVQIDQILVNLAINARDAMPEGGTFAIKTEWVSSHADHPQSI 800

Query: 732 -------TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
                   +N+ V + V DTG G+    + +  +PF          G+G GLGL +   +
Sbjct: 801 RTTETVVQANDLVRITVSDTGTGIPKDLIPRIFEPFFTTKG----EGQGHGLGLSVVHGI 856

Query: 785 VDANMGKFYIFSTPAKGTLIEIIFP 809
           V+   G   +FS P KGT  EI  P
Sbjct: 857 VNQAGGTIRVFSEPGKGTTFEIDLP 881



 Score =  138 bits (347), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 62/587 (10%), Positives = 162/587 (27%), Gaps = 63/587 (10%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +DA G +   + E  +  G    +  G          ++         ++    W G   
Sbjct: 30  LDADGRVIYANAEYFRIFGCPPRRSEGSPWLQRFQNHNL---------MEATRQWEGVQH 80

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF---- 204
              IEG       D + + I  R  +     G   + +    +         +       
Sbjct: 81  DEEIEGEQTEQTYDGSRVFIRYRFCQLHRVNGDSTLRLFVRYSQQVPAVSSCEPPACSTG 140

Query: 205 ---SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
                L E     +     + +     +             L + + +       E+   
Sbjct: 141 SPCIPLIEQLPIIAWAADARNNCTYVNTFWHQFTGAAHHEHLGQGWLNFIHPEDLERIRS 200

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP----SLSAYFDE 317
               +++   Q      +       ++     N   +   Y             S    E
Sbjct: 201 ADENQATSDLQYRIRRKDGEYRWFLEFSKPCVNQDGQIDGYTGICIDTTESLRESRVSVE 260

Query: 318 GENLTPETVDKCPIPFFV---YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
            +      V+  P    +      G +   N +   +  + + + I        L+  P 
Sbjct: 261 RKKQLRAMVEHAP-GVAIQWFDREGRIQLWNAASTQMFGFTAEEAIGKTY--DELIHTPA 317

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM-TFIPFEKANQFPENMPQNGI 433
                      + ++ ++      + H  + +      + T       ++ P       +
Sbjct: 318 EFACLLKTLDEIVQTGQSIGPNEYQFH--RKDGSTGTCLSTLFCIPSHDEQPLFCC---M 372

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-----GIILSTNRAVSKLFGYP 488
           + +  +    +  +     +  ++ +   D I I++ +       I   N AV  + GY 
Sbjct: 373 DIDITERIQTENALRESEAKFRTLAKNFPDAIFILDPDESQLPLKIAFANDAVRTIHGYQ 432

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            E+++ +     +  +     +     I  L   + L        ++   + + +    +
Sbjct: 433 PEELIGQSLAKKI--DDAPTADQVPERISRLRKGEVLRFDATHIHRDGHTIPMSVTACMI 490

Query: 549 PFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKE----------SSHKSDFLARVSHEI 596
            +           D+S  K  +     ++                 S K +FL     + 
Sbjct: 491 SWDGKTMLLGINRDMSLQKAAEEAQRESEARFRSAFYSSATGMAIVSLKGEFL-----DA 545

Query: 597 RTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
            T L +++G+S E + +  F  + +P  ++    I      +  ++ 
Sbjct: 546 NTALCSMLGYSLEELTSTSFPAITHPTEVD--RDIHA----MKRLIR 586



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/111 (13%), Positives = 35/111 (31%), Gaps = 3/111 (2%)

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
             R     +    S LE    G  +++ +G ++  N    ++FG P       P+    +
Sbjct: 5   EHRSSLDFLADYKSFLETVPAGAELLDADGRVIYANAEYFRIFGCPPRRSEGSPWLQRFQ 64

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553
            +           +   +    +E      T +   + +R    +L   + 
Sbjct: 65  NHNLMEATRQWEGVQHDEE---IEGEQTEQTYDGSRVFIRYRFCQLHRVNG 112


>gi|327479684|gb|AEA82994.1| sensor histidine kinase/response regulator [Pseudomonas stutzeri
           DSM 4166]
          Length = 1239

 Score =  358 bits (920), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 113/529 (21%), Positives = 226/529 (42%), Gaps = 43/529 (8%)

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDD 359
              + R+  +LS    E E    + +++ P+   + +  G +  AN S   L    +   
Sbjct: 337 RERALRSSQALSLQLQEREARFRQLIEQLPVATLLCNAGGRIELANQSAGQLLGGPADLL 396

Query: 360 IEIAGG--LSTLLDAPKLSDNNAIKPVMLY--RSDRTCIAASARLHTIQWNRENSLAMTF 415
                   +  +L    L        + L   R D T I  +  L + + +      +  
Sbjct: 397 AGERVSRYVPGVLGEQILRQLRDTTQLELQAQREDGTPIPVAVSLTSFRHDDALYYVINL 456

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
           +  +   +                             +  +++EA+ +   +++ +G I+
Sbjct: 457 LDLQARKRDD--------------------------ERFRNVVEASPNAFVLVDTQGSIV 490

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL--EKITLGST 533
             NR    LFGY  +++L +P  + L +                   + +   +   G  
Sbjct: 491 MVNRQTELLFGYTRQELLGQPVELLLPEALRDAHRGLRQGYTEHPEPRRMGSNRELFGLH 550

Query: 534 KEEKLLSLRI--IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
           ++   L + I     +          + DIS  K  + +L          + +KS+FLA 
Sbjct: 551 RDGSALPVEIGLSPLRSGDEQLVQAVIIDISHRKAAERRLREQADQLAVANRYKSEFLAN 610

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           +SHE+RTPL +I+  S+ ++    G L N + + +A+ I R+G+ +L ++ND+LD++KIE
Sbjct: 611 MSHELRTPLNSILILSDQLRQNGAGNL-NDKQVRHADIIHRAGHELLQLINDVLDLAKIE 669

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALN 710
           SG M L  EP++L + + +  + +   A +K + +       +P  + +D   ++QI  N
Sbjct: 670 SGHMQLKLEPLNLRDLLRDLEASLGSMAAQKGLSLTMEVDPAVPLTLNSDRARLQQILNN 729

Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEE-----VILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           +L+NA+ FT  G Q+ +  +    ++     V L+VRD+G+G+   + E+  + F QI  
Sbjct: 730 LLTNALKFTEKG-QVELMASLLPADQDGRQMVQLQVRDSGIGIAKDQQERIFQAFQQIDG 788

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           S      GTGLGL + + +V+   G+  + S   +G    ++ P+   +
Sbjct: 789 SISRHYGGTGLGLAITRQLVEVLGGQVMVNSELGQGATFTVLLPVVSDA 837



 Score = 45.4 bits (106), Expect = 0.036,   Method: Composition-based stats.
 Identities = 20/273 (7%), Positives = 75/273 (27%), Gaps = 20/273 (7%)

Query: 70  SENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP 129
            +  F          F   +D  G +  ++ +     G    +++G  +  +      D 
Sbjct: 465 DDERFRNVVEASPNAFVL-VDTQGSIVMVNRQTELLFGYTRQELLGQPVELLLPEALRDA 523

Query: 130 NNHIGDLL----KRQNTWYGKTTL-WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIV 184
           +  +        + +     +       +G+   +P+++   P+ S + +        ++
Sbjct: 524 HRGLRQGYTEHPEPRRMGSNRELFGLHRDGSA--LPVEIGLSPLRSGDEQLVQA----VI 577

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS-L 243
                        +    + +  +  K    +    +             +++   +  L
Sbjct: 578 IDISHRKAAERRLREQADQLAVANRYKSEFLANMSHELRTPLNSILILSDQLRQNGAGNL 637

Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSL-------PEQEDFHTINLNQYTKKQYFGTLQNNS 296
            +      D++    + LL      L          +        +   +    +L + +
Sbjct: 638 NDKQVRHADIIHRAGHELLQLINDVLDLAKIESGHMQLKLEPLNLRDLLRDLEASLGSMA 697

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
            +    L+    P++    +       + ++  
Sbjct: 698 AQKGLSLTMEVDPAVPLTLNSDRARLQQILNNL 730


>gi|170077877|ref|YP_001734515.1| two-component hybrid sensor and regulator [Synechococcus sp. PCC
           7002]
 gi|169885546|gb|ACA99259.1| two-component hybrid sensor and regulator [Synechococcus sp. PCC
           7002]
          Length = 1208

 Score =  358 bits (920), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 108/615 (17%), Positives = 223/615 (36%), Gaps = 30/615 (4%)

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
            KF  +  +     + E +           P     ++         ++  + +     L
Sbjct: 189 PKFPSIPAVAIASPATESDTSQTLQF----PIQDRNSRTIGTLHVQHYQPTIDQELATKL 244

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
                +    + +                T+ N  +E     +              E  
Sbjct: 245 TRIFAARAAAEIERKRALDELAWANNQLETINNQLEEKVAARTQALKTVNET-LRSSEAR 303

Query: 322 TPETVDKCPIPFFVYSHG---NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
               V   P   +         + + +     +T Y + D +         +  P+    
Sbjct: 304 YRSLVLNIPGAVYRCLPDAQWTMEFLSNGIEPITGYPATDFLHNQVRAFGDIIHPEDYPR 363

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
                  L   + T      RL  +    +N   +        +     +   G+  E  
Sbjct: 364 VLASLGTLTPDNPTYTD-EYRLVRV---DQNICWVFEQGRGIFDATGHLIRLEGVMIEVT 419

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
           D ++  + ++ E  QL  +++     +A+++++   ++ +      +    + ++ +   
Sbjct: 420 DRKLASQALDQERRQLRQLIQNMPVAMAMLDKKLCYVAHSHQWLVDYQLGEKTLVGRSHR 479

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII--KKLPFSSCYSL 556
                N       +L   L   +    E   +    +++ L   +     +        +
Sbjct: 480 EVFV-NLQEDYQQHLQTALGGQVITCEEDCYVQHDGKKQYLKWTVQPWYHRENQVGGVVI 538

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
              +I       N L   ++ A   S  KS FLA +SHEIRTP+  I+G +E+++  +  
Sbjct: 539 VTQNI-------NDLVEGREAALAASRLKSSFLANMSHEIRTPMNGILGIAELLQTTQL- 590

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
              NP+  ++   + +S N +L ++ND+LD SK+E+G+M L   P+ + + V     L+ 
Sbjct: 591 ---NPQQQDFIKTLSQSANHLLYVINDILDFSKLEAGEMRLESVPLQIIDCVESVAELLA 647

Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
           + A  K++ + T+    +   +  D   ++QI  N++ NAI FT  G  +I +     +E
Sbjct: 648 IQAQTKQVELITTIDPQLGGTVTGDSMRLRQILTNLVGNAIKFTHRGSVVIRALPMAEDE 707

Query: 736 E---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
               V   V DTG+G+   +  K  + F Q+  S      GTGLGL +AK +V    G  
Sbjct: 708 ASVLVKFEVIDTGIGIDKADQAKLFRSFSQVDPSTTREYGGTGLGLAIAKHLVSLMAGDI 767

Query: 793 YIFSTPAKGTLIEII 807
            + S+P +G+     
Sbjct: 768 GLESSPGQGSTFWFT 782


>gi|220932996|ref|YP_002509904.1| multi-sensor signal transduction histidine kinase [Halothermothrix
           orenii H 168]
 gi|219994306|gb|ACL70909.1| multi-sensor signal transduction histidine kinase [Halothermothrix
           orenii H 168]
          Length = 594

 Score =  358 bits (920), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 76/389 (19%), Positives = 171/389 (43%), Gaps = 27/389 (6%)

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
           N+             +++ +I +   E    +  ++  +  DG+ + + E  I   N A 
Sbjct: 227 NELGTLAHSFNYMANELERKIEEIFREKSRTE--AVFTSIVDGLIVTDNEKKITMVNPAA 284

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
            K+ G     +L +     +  +    +        SL+ ++ L++     T   K++ L
Sbjct: 285 RKILGLNKG-VLGRDIIEVIRHHKVDQLLE-----TSLEKKKILKEELNFQTPGSKIIRL 338

Query: 542 RIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                +          + + D++E ++ +                + +F+A VSHE++TP
Sbjct: 339 NFAPIENKEGQVAGGLIVLTDVTELRRLE--------------QLRKEFVANVSHELKTP 384

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           LT+IIG+ + I +       +     + + I    + +  ++ DLLD+SK+E+ +  +  
Sbjct: 385 LTSIIGYIDTIIDNDI--KDDTTIKRFLSIIKDEADRLYLLIKDLLDLSKLEAKRGEVIL 442

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719
           +P  L++ V +   ++Q  A  K I ++      +P +      ++Q+ +N++ N I +T
Sbjct: 443 QPGDLNKIVKKIYLMLQEQAESKDIDLKLDIKEKLPFVYLIPEQIEQVLINLVDNGIKYT 502

Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
             GG++I+   +  N  V++ V D G+G+   +  +  + F ++  ++     GTG+GL 
Sbjct: 503 EPGGRVILR-AYEENNRVVVEVEDNGIGIPEEDQGRIFERFYRVDKARSRSMGGTGIGLS 561

Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           + K ++  +  +  + S P KG+L     
Sbjct: 562 IVKHIIKNHDSEIKVESEPGKGSLFRFYL 590


>gi|284035081|ref|YP_003385011.1| PAS/PAC sensor signal transduction histidine kinase [Spirosoma
            linguale DSM 74]
 gi|283814374|gb|ADB36212.1| PAS/PAC sensor signal transduction histidine kinase [Spirosoma
            linguale DSM 74]
          Length = 1178

 Score =  358 bits (920), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 113/745 (15%), Positives = 243/745 (32%), Gaps = 54/745 (7%)

Query: 90   DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR--QNTWYGKT 147
            D  G+L E++      +G  A ++  +    +      +      ++LK+  Q     + 
Sbjct: 461  DRKGFLLEVNHAFQDVMGYSASELKTIPFLQLIHP--AEKAMVSTEVLKKSQQEPVRNRI 518

Query: 148  TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
              W  +     + I+ +A+          G   +G                +L ++    
Sbjct: 519  NKWRCKDGTYRI-IEWSAI-------GVDGLV-YGSARDITDRQAAEDQLYQLHERLQLA 569

Query: 208  HEIKKGHSSVEK-------EKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
             +                     ++        +R       L+  +      L  + + 
Sbjct: 570  TKAAGQGIWENDLINGKVIWDERLWELHGLTLPVRPLTFADFLSFVHPDDLPALMAKAHT 629

Query: 261  LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE--- 317
             L  +E ++         N      +     ++++S ++   +      +     +E   
Sbjct: 630  ELVGKEDAVTNVYRIVCPNGMVRYLETNGRIIRDSSGKAIRLIGVAWDVTRRKLDEENLR 689

Query: 318  -GENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
              E      VD      F     G   Y NP++ ++T +   + +         LD+   
Sbjct: 690  TSEQRYRSLVDHLDTIVFQTDAKGKWVYLNPAWEVVTGFSVEESLGG-----YFLDSILP 744

Query: 376  SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
             D+   + +         +     +  I+        +              M   G   
Sbjct: 745  EDHTETRQLFEEIKAGQRMGVRHTIRYIRK-GGGYRWIDVNAQVLLRDGHVRMGVTGTLT 803

Query: 436  EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG-IILSTNRAVSKLFGYPVEDILR 494
            +  + ++ +  ++    +   I E   +   I++ +    L  N A  K  G    +I R
Sbjct: 804  DITERKMAEEAIQESEQRFREIAENVDEVFCILDSKKPRFLYVNPAFEKFTGVSSPEIYR 863

Query: 495  KP--FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
                F   + +   S++       +S       E       ++  L  L   +  +   +
Sbjct: 864  NSSLFLPRIVEEDRSLIQTIFQNSVSGS-----ELTFRARHQDGSLRWLNARVFGVTNEA 918

Query: 553  CY----SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                       DI+   +++  L  + +     ++ KS F+   SHE RTPL  I   +E
Sbjct: 919  GVLIRRIGVATDITTAIEKEQILEASLQNERTLNTLKSQFITTASHEFRTPLMGISSSTE 978

Query: 609  ----VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
                 +  +   P+  P   ++   I      + +++ D L +SKIE GK+++      L
Sbjct: 979  LVKHYMAREDIRPVL-PIINKHLTAILTKVASLNELIGDTLTLSKIEQGKIDVQLTSTDL 1037

Query: 665  DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724
                   ++     + +KR  I          +L D + +  I  N+L NAI F+     
Sbjct: 1038 AALCKSLVASTSADSKDKR-QIDFQVIGKDVALLVDKKLINHILTNLLMNAIKFSTKSVS 1096

Query: 725  IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
            + ++   T    V + V D G+G+   +L      F +  N+     +G+GLGL + +  
Sbjct: 1097 LTLTYGLTD---VKIAVSDQGIGIPKKDLPHLFDKFFRAGNATN--YQGSGLGLAICQEY 1151

Query: 785  VDANMGKFYIFSTPAKGTLIEIIFP 809
            ++   G+  + S    GT   I  P
Sbjct: 1152 INLMQGQIGVASKEGAGTTFTITLP 1176



 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 41/523 (7%), Positives = 139/523 (26%), Gaps = 36/523 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIG---MRLCDVSD---------ILHIDPNNHIGDL 136
            ++ G ++ +++     +G  A ++IG       + +              +  ++    
Sbjct: 321 TNSDGIVQTVNQATETLLGFSASELIGKVARLKSESTHSSLPVITFSPYDSEEVHNFFAQ 380

Query: 137 --LKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR 194
             +        +  L    G    V + ++ L   + +    G+ G  I           
Sbjct: 381 PTVAEYGYVQQECLLATRNGRLAPVLLTVSQL--KNEDGSVLGYMG--IATDISALKLAE 436

Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP----PHLRMKNKVSSLTEYYAHK 250
           A  ++ ++              +   K  +            +   + K     +     
Sbjct: 437 AKLRQKNQILDTFFAGALDMHCIADRKGFLLEVNHAFQDVMGYSASELKTIPFLQLIHPA 496

Query: 251 DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310
           +  + + +    + +E        +   +      +     +  +           +  +
Sbjct: 497 EKAMVSTEVLKKSQQEPVRNRINKWRCKDGTYRIIEW--SAIGVDGLVYGSARDITDRQA 554

Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
                 +                +     +G +   +     L        + +      
Sbjct: 555 AEDQLYQLHERLQLATKAAGQGIWENDLINGKVI-WDERLWELHGLT----LPVRPLTFA 609

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
              +    D+        +        A   ++ I         +        +   + +
Sbjct: 610 DFLSFVHPDDLPALMAKAHTELVGKEDAVTNVYRIVCPNGMVRYLETNGRIIRDSSGKAI 669

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
              G+  +    ++++  +     +  S+++     +   + +G  +  N A   + G+ 
Sbjct: 670 RLIGVAWDVTRRKLDEENLRTSEQRYRSLVDHLDTIVFQTDAKGKWVYLNPAWEVVTGFS 729

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
           VE+ L   F   +     +       EI +   R  +        K      + +  + L
Sbjct: 730 VEESLGGYFLDSILPEDHTETRQLFEEIKA-GQRMGVRHTIRYIRKGGGYRWIDVNAQVL 788

Query: 549 PFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
                     + T+ DI+E K  +  +  +++   + + +  +
Sbjct: 789 LRDGHVRMGVTGTLTDITERKMAEEAIQESEQRFREIAENVDE 831



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 56/435 (12%), Positives = 121/435 (27%), Gaps = 59/435 (13%)

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY--------YAHKDDV 253
           +       +    +  +       S    P    + N++ SL E             D  
Sbjct: 34  ELVDLQRRMAAPSTPSDYLAGTCLSDWVAPSAGAVLNRLWSLLEQGTVCRLTYQPAPDQT 93

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
            +    P+       L        I+++  ++    G       +       R     ++
Sbjct: 94  SQLLITPMEGGYLVELLADNPADAISVSTESEIVSVGQTIEQRTDYSAQAGARGLSKQAS 153

Query: 314 YFDEGENLTPETVDKCPIPFFVYS---------HGNLFYANPSFLLLTKYKSVDDIEIAG 364
             D    L    V   P+   +             +  + NP+   L  Y     I    
Sbjct: 154 SLDATNQLLEAIVSNTPVGLALLRPVWQSGCLIDFSYLWTNPAHAALIGYS----IIQLA 209

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
           G       P  +       +         +        +Q +  +      I     N  
Sbjct: 210 GQRFKALHPSAASAGLFDRLADVAQTGQSLHYQ---KQVQHDGLSLWGEFTIIRVGENVL 266

Query: 425 PENMPQNGIEPEDVDTRINKRKMEI-------EVMQLC----SILEATSDGIAIINREGI 473
              M  + +       R    ++E        +V QL     +IL+     I   N +GI
Sbjct: 267 FTVMDISPLMEAKALLRKKNSQLEKGIAERTKQVRQLSTLQNAILKHAGQAIISTNSDGI 326

Query: 474 ILSTNRAVSKLFGYPVEDILRK------------PFTVFLEQNTPSVMNHYLTEILSLDL 521
           + + N+A   L G+   +++ K               +         ++++  +  ++  
Sbjct: 327 VQTVNQATETLLGFSASELIGKVARLKSESTHSSLPVITFSPYDSEEVHNFFAQ-PTVAE 385

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKI 577
              +++  L +T+  +L  + + + +L         Y     DIS  K  + KL      
Sbjct: 386 YGYVQQECLLATRNGRLAPVLLTVSQLKNEDGSVLGYMGIATDISALKLAEAKL------ 439

Query: 578 AEKESSHKSDFLARV 592
             +++     F A  
Sbjct: 440 -RQKNQILDTFFAGA 453



 Score = 75.4 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 21/251 (8%), Positives = 63/251 (25%), Gaps = 8/251 (3%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ-NTWY 144
            +  DA G    ++       G    + +G    D            + + +K       
Sbjct: 706 VFQTDAKGKWVYLNPAWEVVTGFSVEESLGGYFLDSILPEDHTETRQLFEEIKAGQRMGV 765

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
             T  +  +G      ID+ A  +        G  G   +             +  +++F
Sbjct: 766 RHTIRYIRKGGGYR-WIDVNAQVLLRDGHVRMGVTG--TLTDITERKMAEEAIQESEQRF 822

Query: 205 SHLHEIKKGHS-SVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
             + E        ++ +K                +              +++ ++  + T
Sbjct: 823 REIAENVDEVFCILDSKKPRFLYVNPAFEKFTGVSSPEIYRNSSLFLPRIVEEDRSLIQT 882

Query: 264 SEESSLPEQE---DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
             ++S+   E        + +          + N +      +      + +   ++   
Sbjct: 883 IFQNSVSGSELTFRARHQDGSLRWLNARVFGVTNEAGVLIRRIGVATDITTAIEKEQILE 942

Query: 321 LTPETVDKCPI 331
            + +       
Sbjct: 943 ASLQNERTLNT 953


>gi|17232819|ref|NP_489367.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120]
 gi|17134466|dbj|BAB77026.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120]
          Length = 559

 Score =  358 bits (920), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 105/435 (24%), Positives = 189/435 (43%), Gaps = 39/435 (8%)

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINREG 472
           +     +  +    M     +        ++  +     +   ++E  ++  I +++   
Sbjct: 118 SLNSALRQARSQAQMNARVAQQNYERLLQSQYNLRRSEERYRLLVEGVTNYAIFMLDSNA 177

Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI-TLG 531
              + N    ++ GY   +I+ +PF +               ++L   L +   +     
Sbjct: 178 NFTTWNIGAERILGYQEAEIIGQPFELIFAPEAIERGQP--QQVLKQALTEGFSRENRWH 235

Query: 532 STKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNK-------LSHAKKIAEK 580
             K+        +I  L         +S  M DI+E KQ + +          A+  AE 
Sbjct: 236 IRKDGTFFWAHCLITPLRDENGNLRGFSKIMQDITERKQAEEEKEQLLLREQAARAEAEA 295

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            +  K DFLA VSHE+RTP+TAIIG++ +++    G L   R       I+R+ NL + +
Sbjct: 296 ANRSKDDFLAIVSHELRTPMTAIIGWAGMLQT---GALDEARASLALETIERNANLQMQL 352

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILAD 700
           + DLLDIS+I  G+++L  + V L E +++AI +VQ  A+ K I I++    +I +I  D
Sbjct: 353 IEDLLDISRIVRGELSLSIDLVDLVEVITDAIEVVQSLADNKGIQIKSRPDTSIDKIWGD 412

Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN--------------------EEVILR 740
              + Q+ LN+L+NAI FTP+GG+I +  +                            ++
Sbjct: 413 SDRLLQVVLNLLTNAIKFTPNGGRIEVCLSKELGTGDWGLGNRGDETNVSCPIPHYAQIQ 472

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PA 799
           V DTG G++   L    + F Q  +S     +G GLGL +A+ +V+ + G     S    
Sbjct: 473 VIDTGQGISADFLPHIFERFRQADSSHTRSNKGLGLGLAIARHLVELHGGTIQAQSQGIG 532

Query: 800 KGTLIEIIFPLYDTS 814
           +G    +  P+ + S
Sbjct: 533 QGATFTVKLPITEES 547



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 35/365 (9%), Positives = 92/365 (25%), Gaps = 42/365 (11%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID---PNNHIGDLLKRQNT 142
            + +D++      +    + +G    ++IG     +     I+   P   +   L    +
Sbjct: 170 IFMLDSNANFTTWNIGAERILGYQEAEIIGQPFELIFAPEAIERGQPQQVLKQALTEGFS 229

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
                  W I     +        P+   N    GF    I+             ++L  
Sbjct: 230 REN---RWHIRKDGTFFWAHCLITPLRDENGNLRGFSK--IMQDITERKQAEEEKEQLLL 284

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
           +        +  +  + +   I S +   P   +    + + +  A  +         + 
Sbjct: 285 REQAARAEAEAANRSKDDFLAIVSHELRTPMTAII-GWAGMLQTGALDEARASLALETIE 343

Query: 263 TSEESSLPEQEDFHTINLNQYTK--------------KQYFGTLQNNSKESFEYLSHRNH 308
            +    +   ED   I+     +                    +Q+ +      +  R  
Sbjct: 344 RNANLQMQLIEDLLDISRIVRGELSLSIDLVDLVEVITDAIEVVQSLADNKGIQIKSRPD 403

Query: 309 PSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYA-------------NPSF-----L 349
            S+   + + + L    ++       F  + G +                N         
Sbjct: 404 TSIDKIWGDSDRLLQVVLNLLTNAIKFTPNGGRIEVCLSKELGTGDWGLGNRGDETNVSC 463

Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
            +  Y  +  I+   G+S                     +    +  +   H ++ +   
Sbjct: 464 PIPHYAQIQVIDTGQGISADFLPHIFERFRQADSSHTRSNKGLGLGLAIARHLVELHGGT 523

Query: 410 SLAMT 414
             A +
Sbjct: 524 IQAQS 528


>gi|71905650|ref|YP_283237.1| PAS [Dechloromonas aromatica RCB]
 gi|71845271|gb|AAZ44767.1| PAS protein [Dechloromonas aromatica RCB]
          Length = 1439

 Score =  358 bits (920), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 112/566 (19%), Positives = 200/566 (35%), Gaps = 32/566 (5%)

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
           T   P     + +   +E    +  ++ T +     L+    +    L            
Sbjct: 391 TTDAPWREVIQLAAALEEMRQHLQSSRRTLEDTNIELELKVAKRTLALRQNQEI-----L 445

Query: 316 DEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
            + E       D   +              NP+F           +         L+   
Sbjct: 446 QKREAFFRAIFDNAAVGIISLDPERKPVLVNPAFAKFIDQPINTLLSH-------LENIA 498

Query: 375 LSDNNAIKPVMLYRSDR--TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
           L      +   L          +       I  N +             ++  E      
Sbjct: 499 LPKEVLGRINDLLGQTGSAQQQSLRNEFEFIDKNGDT-HWGDVQIAAVRDENGELDSLLI 557

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
              +  D R  + ++  +   L ++L+   + I         L  N+A    FG    + 
Sbjct: 558 TVLDVSDRREIEAELIRQFSFLQALLDTIPNPIFYKGANTHFLGCNQAYEAFFGINRREF 617

Query: 493 LRKPFTVF--LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK---- 546
           + K       L ++T         +++       + +       + KL  +   +     
Sbjct: 618 VGKRVVDLEYLPEDTRQAYQTEDEQVIEAG--SRISREVSLPGADGKLHDVLYSVSGFHS 675

Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
                      + DI+  K+ + +   A+  AE  ++ K+DFLA +SHEIRTP+ AIIG 
Sbjct: 676 PDGRPDGLIGVIVDITALKEAEREADRARATAESAAAAKADFLANMSHEIRTPMNAIIGM 735

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
           + +          N R   Y   +D +   +L I+ND+LD+SKIE+G M+    P SLD 
Sbjct: 736 THLALQTEL----NSRQKNYLTKVDNAAKGLLGIINDILDLSKIEAGMMHFEHAPFSLDA 791

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-Q 724
           ++     +  L A E+ + +    A  +P +++ D   + Q+ LN++ NAI FT +G   
Sbjct: 792 SLERLSDMCSLKARERGLELLYDIAPEVPDQLIGDSLRLGQVLLNLVGNAIKFTEAGEIT 851

Query: 725 IIISTTHTSNEEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
           + +        EV     V DTG+GM   +  +    F Q   S   +  GTGLGL + K
Sbjct: 852 VTVKLLANRENEVDLGFEVIDTGIGMNVEQQSQLFSAFTQADTSTTRKYGGTGLGLSICK 911

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIF 808
            +V+   G   + S P  G+      
Sbjct: 912 RIVELQGGSIGVSSQPGIGSRFTFQL 937



 Score = 41.2 bits (95), Expect = 0.78,   Method: Composition-based stats.
 Identities = 22/244 (9%), Positives = 52/244 (21%), Gaps = 18/244 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL-----KRQNTW 143
           +D       ++    K I      ++   L +++    +     I DLL      +Q + 
Sbjct: 466 LDPERKPVLVNPAFAKFIDQPINTLL-SHLENIALPKEV--LGRINDLLGQTGSAQQQSL 522

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +       G   +  + +AA  +   N E         V       +  A   R    
Sbjct: 523 RNEFEFIDKNGDTHWGDVQIAA--VRDENGELDSL--LITVLDVSDRREIEAELIRQFSF 578

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPH------LRMKNKVSSLTEYYAHKDDVLKTE 257
              L +        +                          K     EY           
Sbjct: 579 LQALLDTIPNPIFYKGANTHFLGCNQAYEAFFGINRREFVGKRVVDLEYLPEDTRQAYQT 638

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
           +   +    S +  +      +   +          +        +      +     + 
Sbjct: 639 EDEQVIEAGSRISREVSLPGADGKLHDVLYSVSGFHSPDGRPDGLIGVIVDITALKEAER 698

Query: 318 GENL 321
             + 
Sbjct: 699 EADR 702


>gi|257059046|ref|YP_003136934.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 8802]
 gi|256589212|gb|ACV00099.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 8802]
          Length = 1193

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 101/433 (23%), Positives = 184/433 (42%), Gaps = 36/433 (8%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
             +      +     +  E +  +  +  +     +    +  T+DGI   +     +  
Sbjct: 526 RVEERTEELSRLNQNLTEEILQRQEIEADLRESESRYHLAVSGTNDGIWDWDLRTNKVYY 585

Query: 478 NRAVSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
           +    K+ GY  + +      ++  +  +        +   L     +  E       ++
Sbjct: 586 SPVWMKILGYKPDALPHLLTTWSDNVYPDDLDRTLKDVQNHL-DGKTEVYENSHRIKHRD 644

Query: 536 EKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
              + +    K L            T+ DI++ K+ +  L  AK+ AE  +  KS+FLA 
Sbjct: 645 GHYIWIEAKGKCLRNQEGHPLRLVGTITDITQKKEAQEALRKAKESAEIANRAKSEFLAN 704

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           +SHEIRTP+ AI+GF E+++    G + +PR   Y N I  SG ++L ++ND+LD+SKI+
Sbjct: 705 MSHEIRTPMNAILGFCELLQ----GIIDDPRSRSYLNSIASSGKILLALINDILDLSKID 760

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALN 710
           SGK+ +++EP+ L   + E   +    A +K++ +    A++IP  I+ D   ++QI  N
Sbjct: 761 SGKLQINYEPIHLRALIEEIYQIFVEDAQKKKVTLSLFIADDIPSTIIFDEVRLRQILFN 820

Query: 711 ILSNAIHFTPSGG-QIIIST--THTSNEE---------------------VILRVRDTGV 746
           +L NA+ FT  G  +I +        N E                     + + V DTG+
Sbjct: 821 VLGNALKFTHEGAVKIAVKATKKLPENREKIDHVYHNRLVNQQSKADCYCLTISVEDTGI 880

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+   + +     F Q       +  GTGLGL + + +     G  ++ S   KG+    
Sbjct: 881 GIAPEQQDYIFDAFTQSEGQSTRKYGGTGLGLTITRRLTQMLGGTIHLQSQLGKGSTFTF 940

Query: 807 IFPLYDTSHPHDC 819
            FP    +  HD 
Sbjct: 941 YFPNVSFAETHDI 953



 Score = 47.7 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/145 (8%), Positives = 34/145 (23%), Gaps = 4/145 (2%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKM--IGMRLCDVSDILHIDPNNHIGDLLKRQNTW 143
            W+ D        S    K +G     +  +     D      +D             T 
Sbjct: 573 IWDWDLRTNKVYYSPVWMKILGYKPDALPHLLTTWSDNVYPDDLDRTLKDVQNHLDGKTE 632

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             + +         Y+ I+     + ++       R  G +       + +   ++  + 
Sbjct: 633 VYENSHRIKHRDGHYIWIEAKGKCLRNQEGHP--LRLVGTITDITQKKEAQEALRKAKES 690

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQ 228
               +  K    +    +       
Sbjct: 691 AEIANRAKSEFLANMSHEIRTPMNA 715


>gi|218245995|ref|YP_002371366.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 8801]
 gi|218166473|gb|ACK65210.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 8801]
          Length = 1193

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 101/433 (23%), Positives = 184/433 (42%), Gaps = 36/433 (8%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
             +      +     +  E +  +  +  +     +    +  T+DGI   +     +  
Sbjct: 526 RVEERTEELSRLNQNLTEEILQRQEIEADLRESESRYHLAVSGTNDGIWDWDLRTNKVYY 585

Query: 478 NRAVSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
           +    K+ GY  + +      ++  +  +        +   L     +  E       ++
Sbjct: 586 SPVWMKILGYKPDALPHLLTTWSDNVYPDDLDRTLKDVQNHL-DGKTEVYENSHRIKHRD 644

Query: 536 EKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
              + +    K L            T+ DI++ K+ +  L  AK+ AE  +  KS+FLA 
Sbjct: 645 GHYIWIEAKGKCLRNQEGHPLRLVGTITDITQKKEAQEALRKAKESAEIANRAKSEFLAN 704

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           +SHEIRTP+ AI+GF E+++    G + +PR   Y N I  SG ++L ++ND+LD+SKI+
Sbjct: 705 MSHEIRTPMNAILGFCELLQ----GIIDDPRSRSYLNSIASSGKILLALINDILDLSKID 760

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALN 710
           SGK+ +++EP+ L   + E   +    A +K++ +    A++IP  I+ D   ++QI  N
Sbjct: 761 SGKLQINYEPIHLRALIEEIYQIFVEDAQKKKVTLSLFIADDIPSTIIFDEVRLRQILFN 820

Query: 711 ILSNAIHFTPSGG-QIIIST--THTSNEE---------------------VILRVRDTGV 746
           +L NA+ FT  G  +I +        N E                     + + V DTG+
Sbjct: 821 VLGNALKFTHEGAVKIAVKATKKLPENREKIDHVYHNRLVNQQSKADCYCLTISVEDTGI 880

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+   + +     F Q       +  GTGLGL + + +     G  ++ S   KG+    
Sbjct: 881 GIAPEQQDYIFDAFTQSEGQSTRKYGGTGLGLTITRRLTQMLGGTIHLQSQLGKGSTFTF 940

Query: 807 IFPLYDTSHPHDC 819
            FP    +  HD 
Sbjct: 941 YFPNVSFAETHDI 953



 Score = 47.7 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/145 (8%), Positives = 34/145 (23%), Gaps = 4/145 (2%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKM--IGMRLCDVSDILHIDPNNHIGDLLKRQNTW 143
            W+ D        S    K +G     +  +     D      +D             T 
Sbjct: 573 IWDWDLRTNKVYYSPVWMKILGYKPDALPHLLTTWSDNVYPDDLDRTLKDVQNHLDGKTE 632

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             + +         Y+ I+     + ++       R  G +       + +   ++  + 
Sbjct: 633 VYENSHRIKHRDGHYIWIEAKGKCLRNQEGHP--LRLVGTITDITQKKEAQEALRKAKES 690

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQ 228
               +  K    +    +       
Sbjct: 691 AEIANRAKSEFLANMSHEIRTPMNA 715


>gi|119486508|ref|ZP_01620566.1| Multi-sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106]
 gi|119456410|gb|EAW37541.1| Multi-sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106]
          Length = 1837

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 120/773 (15%), Positives = 241/773 (31%), Gaps = 68/773 (8%)

Query: 86   TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQNTWY 144
             W ++  G+  +         G    +       +            I       +  + 
Sbjct: 936  VWTVNPEGHFIQPQPAWEIYTGQSWSEYQNWGWIEAIHPEDQARVQSIWIQARDNKTIYQ 995

Query: 145  GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
             +  +W    T  Y   +   +P+ +           G +              + +++F
Sbjct: 996  SEGRIWNAA-TQNYRYFEAKGIPLLNSEGSVQ--EWVGTITDVDNRKRAEIALGQSEERF 1052

Query: 205  SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL------TEYYAHKDDVLKTEK 258
              + E  +    +   K       SP       +    L           H +D  +   
Sbjct: 1053 RQMAENVEDVFWIMDVKDVQILYVSPAYEHIWGHSCDRLYTNPYNWLEAIHPEDQQRVRI 1112

Query: 259  YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
                   +    ++      + +    +     + N   E           + S      
Sbjct: 1113 AFFEQGFQDQFSQEYRIIRPDGSMRWIRDRSFPIPNEQGEVRRIAGIAEDITTSKQVAAA 1172

Query: 319  ENLTPETVDKCPI----PFFV-----YSHGNLF-----YANPSFLLLTKYKSVDDIEIAG 364
               + +            F +        G +      Y NP      K  + D I    
Sbjct: 1173 LRRSEQQFRVAQELSLYAFTILKSVRDETGQIIDFEFIYINPKAAEAVKRSAEDIIGQR- 1231

Query: 365  GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
                      L  +     +               +  +      +     +  +  +  
Sbjct: 1232 ------LLEVLPGSQLNTNLFNRYIQVVETGQPHDIEILYDADGITGWFHNMAVKLEDG- 1284

Query: 425  PENMPQNGIEPEDVDTRINKRKMEIEVMQLCS-------ILEATSDGIAI-INREGIILS 476
                       +  D +  +  +        +       ++EA    I I  +R    ++
Sbjct: 1285 -----VAVSFSDISDRKQAEEALRDSEAAAKARAEELEILMEAVPAAIWIAHDRNCHQMT 1339

Query: 477  TNRAVSKLFGYPVEDIL---------RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
             N +  +L       I            PF            +  +            E 
Sbjct: 1340 ANLSAYELMRTSPGSITTATSPDGKNYLPFKQQRNGKEIPPHDLPMQRAGRTGEEVEGEL 1399

Query: 528  ITLGSTKEEKLLSLRIIIKK--LPFSSCYSLTMHDISEWKQEKNKLSH-------AKKIA 578
              +  + E + +  + +  +  L           D++E KQ + +          A++ A
Sbjct: 1400 EFVFDSGEVRYIYGKAVPLRNELGKVRGVIGAFLDVTERKQAEAEREQLLARERSAREEA 1459

Query: 579  EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
            E  +  K +FLA +SHE+R+PL  I+G++ +++ Q+   + +  + +    I+R+  L +
Sbjct: 1460 EAANRIKDEFLAVLSHELRSPLNPILGWANLLQRQK---VDDQVFHQALTTIERNVKLQV 1516

Query: 639  DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
             +++DLLD+S+I  GK+ L+   V L   +  AI  V+L A  K I IRT     + ++L
Sbjct: 1517 QLIDDLLDVSRILRGKLKLNRSSVDLVVVILSAIETVRLAAEAKSIEIRTHLDTQVGKVL 1576

Query: 699  ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
             D   ++QI  N+LSN + F+ +GGQ+ I        E  +RV+D G G+    L     
Sbjct: 1577 GDAGRLQQIVWNLLSNGVKFSETGGQVDIYLESV-GNEAQIRVQDRGKGINPKFLPYVFD 1635

Query: 759  PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFPL 810
             F Q   +   +  G GLGL +   + + + G     S    KG    +  PL
Sbjct: 1636 YFRQEDGTTTRKFGGLGLGLAIVHYITEMHGGTVQAESPGVGKGATFTVKLPL 1688



 Score =  174 bits (442), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 52/526 (9%), Positives = 139/526 (26%), Gaps = 32/526 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYA-FKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
           +D  G L  ++      +  +     +                     L K   T   + 
Sbjct: 300 LDLEGRLLSMNSGGQLILEIHDLQPFLDQPWVKFWQDRDHPKAEKAIHLAKVGGTSRFQG 359

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                +G + +  + +   PI+ + ++    +   +        +     +  +  +  L
Sbjct: 360 YCPTQKGQSKWWDVIV--TPIFGKQQQVE--QILCLSRDITNLKEAENALRSSETLYRTL 415

Query: 208 HEIKKGHSSV----EKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
            +             +  +              +     L +     D     + +    
Sbjct: 416 SDAVPDFIWSCDSNGQTDFVNSRWIEYTGLTLEELNSKGLQQINHPDDYPHLQQAWEEAK 475

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE---- 319
            +      +  +   +            L++      +++            +       
Sbjct: 476 QQGGFFEAEFRYRRHDGVYRWFIGRAAPLKDEVGRVIKWIGTTTDIHERKQAEAEREQLL 535

Query: 320 -------NLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL- 369
                  +     + + P    +       L  AN     +  Y    D+E+     T+ 
Sbjct: 536 QQLETERSRMNAILQQMPAGVLIADEATQKLVLANQQVEQILGYSYPLDLELDAYAQTIT 595

Query: 370 ---LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
                        +  P++        I       +I     +S+ +        +Q  E
Sbjct: 596 FTGFHPNGQPYQASEYPLLRSLKTGEVILGEEI--SILRADGDSIFINVNSAPIRDQQGE 653

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
            +    +  +    R  +  +     +  +++E   D + I   +G  +  N     L G
Sbjct: 654 IVAAVAVFRDITAQRQAELSLRRGEERFRALIEQAPDAVLIAEIDGTYIDVNNNACDLLG 713

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
           Y  E+++ K  +  +       +      +L  +      +      K+   + + I  K
Sbjct: 714 YRREELIGKQISELIPSEDQPRLAAMKQSLLLGNTHV---EEWKLIRKDGTDVPVEISTK 770

Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
            LP    +   + DI+E KQ +  L   ++     +      +A V
Sbjct: 771 ILPD-GRWQAFVRDITERKQAEAALRQREEELRLITDAVPALIAYV 815



 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 69/524 (13%), Positives = 155/524 (29%), Gaps = 48/524 (9%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG--DLLKRQNT 142
           F W+ D++G    ++    +  G    ++    L  ++      P+      +  ++   
Sbjct: 422 FIWSCDSNGQTDFVNSRWIEYTGLTLEELNSKGLQQINHPDDY-PHLQQAWEEAKQQGGF 480

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
           +  +      +G  +Y      A P+          +  G            A  ++L +
Sbjct: 481 FEAEFRYRRHDG--VYRWFIGRAAPLKDEVGRVI--KWIGTTTDIHERKQAEAEREQLLQ 536

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSSLTEYYAHK---------- 250
           +                    I  + +       +   ++   +     +          
Sbjct: 537 QLETERSRMNAILQQMPAGVLIADEATQKLVLANQQVEQILGYSYPLDLELDAYAQTITF 596

Query: 251 ------DDVLKTEKYPLLT---SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301
                     +  +YPLL    + E  L E+      + +          +++   E   
Sbjct: 597 TGFHPNGQPYQASEYPLLRSLKTGEVILGEEISILRADGDSIFINVNSAPIRDQQGEIVA 656

Query: 302 YLSHRNHPSL----SAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKS 356
            ++     +           GE      +++ P    +    G     N +   L  Y+ 
Sbjct: 657 AVAVFRDITAQRQAELSLRRGEERFRALIEQAPDAVLIAEIDGTYIDVNNNACDLLGYRR 716

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
            + I     +S L+ +       A+K  +L            +L  I+ +       T +
Sbjct: 717 EELIGKQ--ISELIPSEDQPRLAAMKQSLLL---GNTHVEEWKL--IRKDG------TDV 763

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476
           P E + +   +        +  + +  +  +     +L  I +A    IA ++RE     
Sbjct: 764 PVEISTKILPDGRWQAFVRDITERKQAEAALRQREEELRLITDAVPALIAYVDREQRFRF 823

Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
            NRA    FGYP E I+ +    F+ +     M   +   L+     T+E          
Sbjct: 824 VNRAYRDWFGYPPEKIIGQHLAEFIGETAYQYMKLNVESALA-GKPVTVELWMPFEGGPR 882

Query: 537 KLLSLRII-IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579
            +    I  I        +   + DI+  KQ +  L  +++   
Sbjct: 883 YVRRQYIPDIANNGTVKGFYALITDITNLKQTEEALRQSEQRYR 926



 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 48/525 (9%), Positives = 133/525 (25%), Gaps = 48/525 (9%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMR-LCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
           +D +     +++E  +  G    +++G +   DV       P         ++ T     
Sbjct: 182 LDRNFCYTYVNQEAARLFGYSREELLGKQLWKDVFVAEAEYPEAEQLRQAMKEQT----P 237

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                   +L   +++ A P         G   +                +  ++    +
Sbjct: 238 LYLEAFSPSLNRYLEINAYP------SVEGISIY--FRDISERKKIETQLQSSEEFNRRI 289

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
            E       V   +  + S  S    +   + +    +    K    +           +
Sbjct: 290 IESSADCIKVLDLEGRLLSMNSGGQLILEIHDLQPFLDQPWVKFWQDRDHPKAEKAIHLA 349

Query: 268 SLPEQEDFHT----INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
            +     F                    +    ++  + L      +     +     + 
Sbjct: 350 KVGGTSRFQGYCPTQKGQSKWWDVIVTPIFGKQQQVEQILCLSRDITNLKEAENALRSSE 409

Query: 324 ETVDKCPIPF--FVY---SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
                       F++   S+G   + N  ++  T    ++++   G              
Sbjct: 410 TLYRTLSDAVPDFIWSCDSNGQTDFVNSRWIEYTGLT-LEELNSKGLQQINHPDDYPHLQ 468

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
            A +     +       A       + +               ++    +   G   +  
Sbjct: 469 QAWEE---AKQQGGFFEAE---FRYRRHDGVYRWFIGRAAPLKDEVGRVIKWIGTTTDIH 522

Query: 439 DTRINKRK-------MEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVE 490
           + +  + +       +E E  ++ +IL+    G+ I +     ++  N+ V ++ GY   
Sbjct: 523 ERKQAEAEREQLLQQLETERSRMNAILQQMPAGVLIADEATQKLVLANQQVEQILGYSYP 582

Query: 491 -----DILRKPFTVF-LEQNTPSVMNHYLTEILSLDLRQT-LEKITLGSTKEEKLLSLRI 543
                D   +  T      N           + SL   +  L +       +   + + +
Sbjct: 583 LDLELDAYAQTITFTGFHPNGQPYQASEYPLLRSLKTGEVILGEEISILRADGDSIFINV 642

Query: 544 IIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
               +               DI+  +Q +  L   ++        
Sbjct: 643 NSAPIRDQQGEIVAAVAVFRDITAQRQAELSLRRGEERFRALIEQ 687



 Score =  124 bits (312), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 40/509 (7%), Positives = 125/509 (24%), Gaps = 29/509 (5%)

Query: 91   AHGYLKEISEELPKTIGNY----------AFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ 140
            A   L   ++++ + +G            A  +                   +  L   +
Sbjct: 562  ATQKLVLANQQVEQILGYSYPLDLELDAYAQTITFTGFHPNGQPYQASEYPLLRSLKTGE 621

Query: 141  NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
                 + ++   +G ++++ +   + PI  +  E        +              +R 
Sbjct: 622  VILGEEISILRADGDSIFINV--NSAPIRDQQGEIVAA--VAVFRDITAQRQAELSLRRG 677

Query: 201  DKKFSHLHEIKKGHSSVEKEKYDIFS--QQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
            +++F  L E       + +           +       + ++           +      
Sbjct: 678  EERFRALIEQAPDAVLIAEIDGTYIDVNNNACDLLGYRREELIGKQISELIPSEDQPRLA 737

Query: 259  YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
                +    +   +E             +    +  + +               A   + 
Sbjct: 738  AMKQSLLLGNTHVEEWKLIRKDGTDVPVEISTKILPDGRWQAFVRDITERKQAEAALRQR 797

Query: 319  ENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
            E       D  P    +V       + N ++     Y     I           A  + +
Sbjct: 798  EEELRLITDAVPALIAYVDREQRFRFVNRAYRDWFGYPPEKIIGQ-------HLAEFIGE 850

Query: 378  NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
                   +   S       +  L  + +       +                   +  + 
Sbjct: 851  TAYQYMKLNVESALAGKPVTVELW-MPFEGGPRY-VRRQYIPDIANNGTVKGFYALITDI 908

Query: 438  VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
             + +  +  +     +  S++   S  +  +N EG  +    A     G    +     +
Sbjct: 909  TNLKQTEEALRQSEQRYRSLVSILSSIVWTVNPEGHFIQPQPAWEIYTGQSWSEYQNWGW 968

Query: 498  TVFLEQNTPSVMNHYLTEILSLDLR-QTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCY 554
               +     + +     +        Q+  +I   +T+  +    + I           +
Sbjct: 969  IEAIHPEDQARVQSIWIQARDNKTIYQSEGRIWNAATQNYRYFEAKGIPLLNSEGSVQEW 1028

Query: 555  SLTMHDISEWKQEKNKLSHAKKIAEKESS 583
              T+ D+   K+ +  L  +++   + + 
Sbjct: 1029 VGTITDVDNRKRAEIALGQSEERFRQMAE 1057



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 43/355 (12%), Positives = 115/355 (32%), Gaps = 23/355 (6%)

Query: 242 SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYT---KKQYFGTLQNNSKE 298
            L   Y + D ++ ++   +LT+ E+   E +DF+  +  +      K  +  + +   +
Sbjct: 85  PLKSCYPNLDQIIASDIQHILTTGEAICRENQDFNQQSFIEQKHGYFKTSYSPILDQIGQ 144

Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSV 357
               L         A            +++       +  +    Y N     L  Y   
Sbjct: 145 VAGVLGTLIEIPSPAQAPINPETPSNILERITDAFVALDRNFCYTYVNQEAARLFGYSRE 204

Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
           + +         +   +  +   ++  M    ++T +   A             + +   
Sbjct: 205 ELLGKQLWKDVFVAEAEYPEAEQLRQAM---KEQTPLYLEA------------FSPSLNR 249

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
           + + N +P     +    +  + +  + +++        I+E+++D I +++ EG +LS 
Sbjct: 250 YLEINAYPSVEGISIYFRDISERKKIETQLQSSEEFNRRIIESSADCIKVLDLEGRLLSM 309

Query: 478 NRAVSKLFGY-PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
           N     +     ++  L +P+  F +          +  +  +      +        + 
Sbjct: 310 NSGGQLILEIHDLQPFLDQPWVKFWQDRDHPKAEKAIH-LAKVGGTSRFQGYCPTQKGQS 368

Query: 537 KLLSLRIII--KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
           K   + +     K            DI+  K+ +N L  ++ +    S    DF+
Sbjct: 369 KWWDVIVTPIFGKQQQVEQILCLSRDITNLKEAENALRSSETLYRTLSDAVPDFI 423


>gi|71906191|ref|YP_283778.1| PAS [Dechloromonas aromatica RCB]
 gi|71845812|gb|AAZ45308.1| PAS protein [Dechloromonas aromatica RCB]
          Length = 1026

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 121/666 (18%), Positives = 232/666 (34%), Gaps = 51/666 (7%)

Query: 181 FGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV 240
             +   +      +     L          +    S           +     +R +  +
Sbjct: 217 VPVYRPSMPHETIKERRTALLGFTFSPFRAEDLMRSAVSRDNKDVEIELYDGEIRPERLL 276

Query: 241 SSLTEYYAHKDDVLKTEKYPLLTSEE---SSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297
                  +      +  + P+        +    + +F +I  +Q               
Sbjct: 277 FDSHIDQSSASQGRQQVELPIEFGGHQWIALFRSRPEFDSITASQLPISIALIGTLIGLM 336

Query: 298 ESFEYLSHRNHP----SLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLT 352
             F  L          + +   +E E      ++  P    +    G    AN   L L 
Sbjct: 337 SFFWLLRKNRFQQSITAYADRLEENETRLRTLINTMPDIVCLKDGAGRWTEANTLLLRLF 396

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH---TIQWNREN 409
              +++ +   G     L A    D    +   L  SD        RLH   TI    ++
Sbjct: 397 ---ALESVGYQGMTGGELAAAGHFDYA--RLAALEASDEQVWLNGERLHDELTIPVEGQH 451

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469
                                  +  +  +    ++ +     +   ++E +  G+ II 
Sbjct: 452 DRIFDIAKVPLFAADGSRHALLTVGRDITERVETEKALRSAERKFRGLIEQSLAGVYII- 510

Query: 470 REGI-ILSTNRAVSKLFGY-PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
            +G      N   +++FGY   ++I+ +P    L       M             +TL  
Sbjct: 511 -QGRCFRYVNPYFARIFGYDSPDEIIDQPLFEELVSPQDRQMVANNVRRRLNGEMETLHY 569

Query: 528 ITLGSTKEEKLLSLRI--IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK----- 580
             +G  K+   + + +                + DI+E KQ + +L   ++  E+     
Sbjct: 570 SFVGQRKDGSPVDVEVFGTKVDYEDQPALIGVVIDITERKQAEAELKRHRENLEEQVNAR 629

Query: 581 -------------ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
                         +  KS FLA +SHE+RTP+ AIIG + ++         N    E  
Sbjct: 630 TADLLLAKEAAEAANRAKSTFLANMSHELRTPMNAIIGMTHLLIRGN----ENASQREKL 685

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
             +  + + +L ++ND+LD+SKIE+ ++ L   P+ + + V+ AIS+       K +   
Sbjct: 686 AKVSNAADHLLHLLNDILDLSKIEAERLTLEKIPLRISDIVANAISMAGEKIAAKGLQFN 745

Query: 688 TSFANNIP--RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRV 741
              +  +    ++ D   ++QI LN+L NA+ FT  G  I +S + T        + + +
Sbjct: 746 QQISPQLVTTELIGDPLRLRQILLNLLDNALKFTAQGS-ISLSASVTDETSENLTIRISI 804

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            DTG G+ +   ++   PF Q+  S   +  GTGLGL + K ++    GK  + STP  G
Sbjct: 805 EDTGTGIPDEAKDRIFAPFEQVDGSTTRQHGGTGLGLSIVKQLIHLMHGKIEVSSTPGIG 864

Query: 802 TLIEII 807
           +   + 
Sbjct: 865 SCFTLT 870



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 46/408 (11%), Positives = 112/408 (27%), Gaps = 26/408 (6%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D  G   E +  L +     +    GM   +++   H D           +  W     L
Sbjct: 380 DGAGRWTEANTLLLRLFALESVGYQGMTGGELAAAGHFDYARLAALEASDEQVWLNGERL 439

Query: 150 -----WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
                 P+EG +  +  D+A +P+++ +         G         +     +  ++KF
Sbjct: 440 HDELTIPVEGQHDRI-FDIAKVPLFAADGSRHALLTVG--RDITERVETEKALRSAERKF 496

Query: 205 SHLHEIK-KGHSSVEKEKYDIFSQQSP-PPHLRMKNKVS--SLTEYYAHKDDVLKTEKYP 260
             L E    G   ++   +   +            +++    L E      D        
Sbjct: 497 RGLIEQSLAGVYIIQGRCFRYVNPYFARIFGYDSPDEIIDQPLFEELVSPQDRQMVANNV 556

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
                         F     +           + + ++    +      +     +    
Sbjct: 557 RRRLNGEMETLHYSFVGQRKDGSPVDVEVFGTKVDYEDQPALIGVVIDITERKQAEAELK 616

Query: 321 LTPETVD---KCPIPFFVYSHGNLFYANPS---FLLLTKYKSVDDIEIAGGLSTLLDAPK 374
              E ++          + +      AN +   FL    ++    +    G++ LL    
Sbjct: 617 RHRENLEEQVNARTADLLLAKEAAEAANRAKSTFLANMSHELRTPMNAIIGMTHLLIRGN 676

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
            + +   K   +  +    +     +  +       L +  IP   ++     +   G +
Sbjct: 677 ENASQREKLAKVSNAADHLLHLLNDILDLSKIEAERLTLEKIPLRISDIVANAISMAGEK 736

Query: 435 PEDVDTRINKR--------KMEIEVMQLCSILEATSDGIAIINREGII 474
                 + N++        ++  + ++L  IL    D       +G I
Sbjct: 737 IAAKGLQFNQQISPQLVTTELIGDPLRLRQILLNLLDNALKFTAQGSI 784


>gi|260777827|ref|ZP_05886720.1| hypothetical protein VIC_003224 [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260605840|gb|EEX32125.1| hypothetical protein VIC_003224 [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 1057

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 100/390 (25%), Positives = 182/390 (46%), Gaps = 17/390 (4%)

Query: 429 PQNGIEPEDVDTRINKRK--MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
            +  I  E ++  I +R   ++       +I+E     + I++    I+  N+   + +G
Sbjct: 138 RELAIHQEGLEEEIERRTRDLQASEALSRTIIEGAPSSVVILDAHKKIVLWNKTAIETYG 197

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTE---ILSLDLRQTLEKITLGSTKEEKLLSLR- 542
           Y VE+   +     L    P  ++  L++   I   D            T+E+K + +  
Sbjct: 198 YSVEEATGQNLFELLRAELPLELSELLSQDITIEDQDKVSGAFFEVQTYTREDKPIPIDL 257

Query: 543 -IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
            + +         ++ + D++  KQ +++L+ A+  AE+    KS FLA +SHEIRTP+ 
Sbjct: 258 GMTVFLFDDECRIAMFLRDVTSRKQVEDELNEARAKAEEAVEIKSMFLANMSHEIRTPMN 317

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           AIIG S +       P    +  +Y + I  S +L+L I+ND+LD SKIE+GK+++    
Sbjct: 318 AIIGMSHLALKTDLTP----KQHDYISKIHNSASLLLGIINDILDFSKIEAGKLSIEEIE 373

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTP 720
             LD+ +     +    A EK + +      ++P  +  D   + QI +N+++NA+ FT 
Sbjct: 374 FYLDDVLHNVSMVTGQKAFEKGLELLFDIPRDVPKTLYGDPLRLGQIIINLVNNAVKFTE 433

Query: 721 SGGQIIIST----THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
            G +I +S     +     E+   V+DTG+GM+  +  K    F Q   S   +  GTGL
Sbjct: 434 QG-EISVSVKVIRSLDDKIELGFSVKDTGIGMSEEQSSKLFNAFTQADGSTTRKYGGTGL 492

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           GL + + +V+   G+  + S    G+    
Sbjct: 493 GLSICRRLVELMGGEISVDSELNVGSTFRF 522


>gi|256828233|ref|YP_003156961.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256577409|gb|ACU88545.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 1260

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 110/489 (22%), Positives = 203/489 (41%), Gaps = 26/489 (5%)

Query: 339 GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398
           G         +  T  + V    +  G+  L     L+    +  V L    ++      
Sbjct: 142 GMFIDKARQEVQATTIRLVAAFAVVLGVIALFLYVFLNRLLILPVVNLSILTQSLSRGEF 201

Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458
               +   R+    +       +    E       + +          +     +L +I 
Sbjct: 202 VTTNLDQRRDELGVLAHGFNIMSQSLKELYKSLEEKVD-----ARTEDLNNAYHELQAIF 256

Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL- 517
           + +  GI++++ +  ++  NR  + +FGY V +I       F    +    + +  +   
Sbjct: 257 DNSLVGISVLSSDHKVIRANRRFATIFGYSVAEIPLISPEKF--HVSGRNFDEFSEKFFN 314

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS---SCYSLTMHDISEWKQEKNKLSHA 574
            L  R+  +       K+  +   ++  K +            + DIS+ K+    L   
Sbjct: 315 RLAEREIAQLEYQFRRKDGSVFWSQVSAKAIDPQDLSRGVIFVIEDISDRKKASELLRQH 374

Query: 575 -------KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
                  K  A+K +  KS+FLAR+SHEIRTP+ AI+G +E+++        N    EY 
Sbjct: 375 AEDLRVAKDQADKATRSKSEFLARMSHEIRTPMNAILGMAEMLQETSL----NEDQQEYV 430

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
                +G L+L I+ND+LD SKIE G++ L   P +L E V +   L    A EK + + 
Sbjct: 431 KTFSSAGELLLGIINDILDFSKIEVGQIKLESIPFNLRELVDDVNKLFVYRAEEKALRLE 490

Query: 688 TSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEE--VILRVRD 743
              +  + +  + D   ++QI +N++ NA+ FT  GG  + ++ +   +     +  V+D
Sbjct: 491 KKVSEGLAQRYIGDPTRIRQIIINLVGNALKFTSVGGVTMSVTESVMDDGAPCCLFAVKD 550

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TG+G+   +L    + F Q  +S      GTGLGL ++K +V+   G+ ++ S P +GT 
Sbjct: 551 TGIGIPKSKLGTVFESFAQADSSTTREFGGTGLGLAISKKLVELMGGQIWVESEPGQGTT 610

Query: 804 IEIIFPLYD 812
                PL  
Sbjct: 611 FFFKLPLAP 619



 Score = 44.6 bits (104), Expect = 0.074,   Method: Composition-based stats.
 Identities = 20/244 (8%), Positives = 54/244 (22%), Gaps = 24/244 (9%)

Query: 92  HGYLKEISEELPKTIGNYAFKM----------IGMRLCDVSD-ILHIDPNNHIGDLLKRQ 140
              +   +       G    ++           G    + S+   +      I  L    
Sbjct: 269 DHKVIRANRRFATIFGYSVAEIPLISPEKFHVSGRNFDEFSEKFFNRLAEREIAQL---- 324

Query: 141 NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
                +      +G+  +  +   A+     +R       F I  ++        L +  
Sbjct: 325 -----EYQFRRKDGSVFWSQVSAKAIDPQDLSRGVI----FVIEDISDRKKASELLRQHA 375

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
           +       +  K   S  +    +  +   P +  +                        
Sbjct: 376 EDLRVAKDQADKATRSKSEFLARMSHEIRTPMNAILGMAEMLQETSLNEDQQEYVKTFSS 435

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
                   + +  DF  I + Q   +     L+    +  +   +R          +   
Sbjct: 436 AGELLLGIINDILDFSKIEVGQIKLESIPFNLRELVDDVNKLFVYRAEEKALRLEKKVSE 495

Query: 321 LTPE 324
              +
Sbjct: 496 GLAQ 499


>gi|88797749|ref|ZP_01113337.1| PAS [Reinekea sp. MED297]
 gi|88779426|gb|EAR10613.1| PAS [Reinekea sp. MED297]
          Length = 1593

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 101/370 (27%), Positives = 173/370 (46%), Gaps = 13/370 (3%)

Query: 448  EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
            E +     S+LE+  D   I++ +GII   NR   ++FGY   ++L +     L +   +
Sbjct: 714  EKDRKLFKSLLESAPDPTFIVDEQGIIQLVNRRSEQMFGYERNELLGQNIDTLLPERFKA 773

Query: 508  VMNHYLTEILSLDLRQT--LEKITLGSTKEEKLLSLRII--IKKLPFSSCYSLTMHDISE 563
                     +    R+   + +      K+     + +   +  L   +  S  + DI+E
Sbjct: 774  NHPQQRAAFIQNPTRRLMGVGRDLFARCKDGTEFPVEVTLGVVPLEDRTLVSAALRDITE 833

Query: 564  WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             K  + KL HA   A   +  KS FLA  SHEIRTPL AIIG S ++ ++          
Sbjct: 834  RKNSEEKLQHAITQAMSSAEAKSAFLANTSHEIRTPLNAIIGLSHLLDHENL----TENQ 889

Query: 624  IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
                + I  SG  +L+I+ND+LD+SKIE+ ++++   PV+L E + + +++ ++ A+ K 
Sbjct: 890  HLLVDKIQLSGQSLLNIINDVLDLSKIEANEVDIESTPVNLRELIEDTLNVHRMQADLKG 949

Query: 684  ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIIS---TTHTSNEEVIL 739
            + +  +    +P  +  D   +KQI  N+ SNA+ FT  G  I +       T    V  
Sbjct: 950  LEVALNIDPKVPNWVETDKTRLKQILDNLFSNALKFTSEGS-ISLRCHLVEETDRATVRF 1008

Query: 740  RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
             V DTG+G++    ++  +PF Q   S   +  GTGLGL +   +V    G+  + S   
Sbjct: 1009 EVIDTGIGISEKAQQQLFEPFTQADVSTTRKYGGTGLGLSIILKLVYLMEGRLGLESEEG 1068

Query: 800  KGTLIEIIFP 809
            +G+      P
Sbjct: 1069 QGSRFWFELP 1078



 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/161 (9%), Positives = 39/161 (24%), Gaps = 16/161 (9%)

Query: 316 DEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEI------------ 362
           ++   L    ++  P P F V   G +   N     +  Y+  + +              
Sbjct: 714 EKDRKLFKSLLESAPDPTFIVDEQGIIQLVNRRSEQMFGYERNELLGQNIDTLLPERFKA 773

Query: 363 --AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
                 +  +  P        + +     D T       L  +       ++       +
Sbjct: 774 NHPQQRAAFIQNPTRRLMGVGRDLFARCKDGTEFPVEVTLGVVPLEDRTLVSAALRDITE 833

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
                E +     +        +   +     ++ + L A 
Sbjct: 834 RKNSEEKLQHAITQAMSSAEAKS-AFLANTSHEIRTPLNAI 873



 Score = 45.8 bits (107), Expect = 0.034,   Method: Composition-based stats.
 Identities = 15/145 (10%), Positives = 42/145 (28%), Gaps = 11/145 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI-LHIDPNNHIGDLLK---RQN 141
           T+ +D  G ++ ++    +  G    +++G  +  +       +        ++   R+ 
Sbjct: 731 TFIVDEQGIIQLVNRRSEQMFGYERNELLGQNIDTLLPERFKANHPQQRAAFIQNPTRRL 790

Query: 142 TWYGKTTL-WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
              G+       +GT   V + L  +P+  R            +       +     +  
Sbjct: 791 MGVGRDLFARCKDGTEFPVEVTLGVVPLEDRT------LVSAALRDITERKNSEEKLQHA 844

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIF 225
             +     E K    +    +    
Sbjct: 845 ITQAMSSAEAKSAFLANTSHEIRTP 869


>gi|94970530|ref|YP_592578.1| multi-sensor signal transduction histidine kinase [Candidatus
            Koribacter versatilis Ellin345]
 gi|94552580|gb|ABF42504.1| multi-sensor signal transduction histidine kinase [Candidatus
            Koribacter versatilis Ellin345]
          Length = 1043

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 116/788 (14%), Positives = 256/788 (32%), Gaps = 84/788 (10%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD-ILHIDPNNHIGDLLKRQNTWYGKT 147
             D  G +   +    + +G +A +++G    +       ++ +         Q+   G  
Sbjct: 257  TDTSGTIISFNSAAEQMLGYHASEVVGRLAPEKLHDPTELEQHAEQMSRFFGQSISAGFE 316

Query: 148  TLWPIE-----GTNLYVPID---------LAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193
            +L           + +  +          L+   ++  N   +G+    IV       D 
Sbjct: 317  SLIAKARLGTIDESEWTYVRRDGSRFFGLLSTSAMHDENGAITGY--VFIVSDVTRRKDA 374

Query: 194  RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL---RMKNKVSSLTEYYAHK 250
                 ++++++  L +      +V      +         L    ++  V        H 
Sbjct: 375  EKAKSQIERRYRALLQNSSDMVAVIDAAGHLQYISPAVERLLEFEVQELVGREIFDIIHP 434

Query: 251  DDVLKTEKY--PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS---KESFEYLSH 305
             DV         +  +   S P++      +    T +     L  +             
Sbjct: 435  ADVETARTSFYSIALTPGYSAPQELRLRRADGEYLTTEIVANNLLTDEVLHGIVLNARDI 494

Query: 306  RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFL--LLTKYKSVDDIEIA 363
                   A  +    +     +   +   +         N  +            D    
Sbjct: 495  TERSRARAQLEVQNAVARVLAEAENLDQSIPEILQALCNNLDWELSEFWGVDPEQDSMTF 554

Query: 364  GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA--------------------------- 396
                +L         +  +   + R +                                 
Sbjct: 555  NFAWSLPGIDLSEFLDISQHTRIQRGEGLAGRVWEKATAIQVPDITQEENFVRKIEVEAL 614

Query: 397  ---SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV----DTRINKRKMEI 449
               +A    I+         T       +     +         +      +  ++++  
Sbjct: 615  SLKTAVGFPIRSREGVIGVFTLFSMRHRHVDNHLLSMLNTVGAQIGQFIARKRAEQEITQ 674

Query: 450  EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
               +   + E ++D I     +G IL  N       GY  E++L+KP    +        
Sbjct: 675  NEDRYHYLFENSADLILTFGTDGTILHPNSTWMSTLGYSREELLKKPLFDLIGPEDRERC 734

Query: 510  NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY---SLTMHDISEWKQ 566
               +  I+      T +      +++ + + +   I      +     S    D+++ ++
Sbjct: 735  KAIIGMIVRSG--STDKVELTFRSQDGRKIVVEGTISCRYGITGVEYCSAIFQDVTKRRE 792

Query: 567  EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
                              K++F++ VSHE+RTPLT+I G   ++           +    
Sbjct: 793  V--------------DRMKNEFISVVSHELRTPLTSIRGSLGLLAGGAL-RKDPEKADRM 837

Query: 627  ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
             +   ++   ++ ++ND+LDI KIESG + L+ +P+   + +S+A + +   A+  ++ +
Sbjct: 838  LDIALKNTERLVRLINDILDIEKIESGNIALNVQPLDAADLISQASATMHAMADANKVRL 897

Query: 687  RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
             T     I  + AD   + Q   N+LSNAI F+     + IS+       +++RVRD G 
Sbjct: 898  ETHSTRGI--LYADRDRMLQTLTNLLSNAIKFSKPDNTVTISSQRR-GGGLLIRVRDQGR 954

Query: 747  GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
            G+ + +L+   + F Q+  S      GTGLGL + +++V  + G  ++ S   KG+   I
Sbjct: 955  GIPSNKLQTIFERFQQVDASDSRDKGGTGLGLAICRSIVQQHGGSIWVDSIDGKGSEFFI 1014

Query: 807  IFPLYDTS 814
            + P +   
Sbjct: 1015 LLPRFQEE 1022



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 43/384 (11%), Positives = 110/384 (28%), Gaps = 45/384 (11%)

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM----TFIPFEKANQFPE 426
              +++     +   +       +A   RL +++   +   A     + +          
Sbjct: 156 VQRRVATEGKRRMDEIQTKVSEGVALETRLLSVRIEAQRRSAGKSLRSILTGGLLAMLFL 215

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
                 ++ +       +R+++       ++L + +  I   +  G I+S N A  ++ G
Sbjct: 216 AAAGLVLQRDIQKRFAVERQLQRTTALQRAVLNSANYAIISTDTSGTIISFNSAAEQMLG 275

Query: 487 YPVEDILRK-PFTVFLEQNTPSVMNHYLTE-------------ILSLDLRQTLEKITLGS 532
           Y   +++ +       +          ++              I    L    E      
Sbjct: 276 YHASEVVGRLAPEKLHDPTELEQHAEQMSRFFGQSISAGFESLIAKARLGTIDESEWTYV 335

Query: 533 TKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
            ++       +    +   +     Y   + D++  K  +   S  ++       + SD 
Sbjct: 336 RRDGSRFFGLLSTSAMHDENGAITGYVFIVSDVTRRKDAEKAKSQIERRYRALLQNSSDM 395

Query: 589 LARV---SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL- 644
           +A +    H     L  I    E +       L      +  +  D            L 
Sbjct: 396 VAVIDAAGH-----LQYISPAVERLLEFEVQELVGREIFDIIHPADVETARTSFYSIALT 450

Query: 645 --------LDISKIESGKMNLHFEPVSL--DEAVSEAISLVQLYANEKRILIRTSFANNI 694
                   L + + +   +       +L  DE +   +   +      R   +    N +
Sbjct: 451 PGYSAPQELRLRRADGEYLTTEIVANNLLTDEVLHGIVLNARDITERSRARAQLEVQNAV 510

Query: 695 PRILADLRSVKQ----IALNILSN 714
            R+LA+  ++ Q    I   + +N
Sbjct: 511 ARVLAEAENLDQSIPEILQALCNN 534


>gi|239787555|emb|CAX84024.1| Sensor protein [uncultured bacterium]
          Length = 595

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 136/466 (29%), Positives = 216/466 (46%), Gaps = 14/466 (3%)

Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
           +           +    G    LD        A +PV    +    + A   L  I+   
Sbjct: 130 WESTLAEPMRRALRGESGTVIDLDYRAAKVLAAFEPVRRLNA---GVVAKIDLAEIRRPF 186

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
             +  + F+          ++ +    P     +        E+ +L   +E +   I I
Sbjct: 187 LRAAGVCFVSLLLMIAIGASLFRRISVPLIEGEKAM-----GELRKLHQSIEQSPLMIFI 241

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
            +REG I   N    ++ GY V++++ +   +    + P      L   L    +   + 
Sbjct: 242 TDREGRIEYVNPRFCEITGYSVDEVIGRNPRILNSGDMPREFFAELWSTLLSGRQ--FKA 299

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
                 K+      +I+   +         +     DI++ KQ +     A++ AE  + 
Sbjct: 300 EIKDRRKDGSSFWAQIVTSPVRNKEGLITHFVAVHEDITQRKQAEQATQAAREQAEIANR 359

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
            K++ LA +SHE+RTPL AIIGFSE +K Q FGPLG+ +Y EYA  I+ SG  +L ++ND
Sbjct: 360 AKTELLANMSHELRTPLNAIIGFSEGMKLQLFGPLGSAKYEEYAEDINASGQHLLKLIND 419

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703
           +LD+S IE+GK  L  E +++ E    ++ LV+  A +  + +    ++ +P +LAD R 
Sbjct: 420 ILDVSAIEAGKTTLQEELLNVVEIAETSLRLVRARAEKGSVSLFLEASDGLPPLLADGRR 479

Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
           +KQI LN+LSNA+ FTP GG++ +         + L V DTG+GM   EL  AM  FGQ+
Sbjct: 480 IKQILLNLLSNAVKFTPEGGRVTLKAGIDEVGRLHLAVADTGIGMDEKELTLAMTEFGQV 539

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
                 R EGTGLGLPL K +V+ + G F + S    GT    IFP
Sbjct: 540 DGGLDRRHEGTGLGLPLTKGLVEIHGGIFSVESKKGHGTTASAIFP 585



 Score = 71.2 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 24/246 (9%), Positives = 66/246 (26%), Gaps = 14/246 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWY 144
            +  D  G ++ ++    +  G    ++IG     ++           +   L     + 
Sbjct: 239 IFITDREGRIEYVNPRFCEITGYSVDEVIGRNPRILNSGDMPREFFAELWSTLLSGRQFK 298

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            +      +G++ +  I  +  P+ ++    + F    +              +   ++ 
Sbjct: 299 AEIKDRRKDGSSFWAQIVTS--PVRNKEGLITHF--VAVHEDITQRKQAEQATQAAREQA 354

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
              +  K    +    +       +P   +   ++   L  +        +     +  S
Sbjct: 355 EIANRAKTELLANMSHELR-----TPLNAIIGFSEGMKLQLFGPLGSAKYEEYAEDINAS 409

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
            +  L    D   ++      +    TLQ       E          +       +L  E
Sbjct: 410 GQHLLKLINDILDVSA----IEAGKTTLQEELLNVVEIAETSLRLVRARAEKGSVSLFLE 465

Query: 325 TVDKCP 330
             D  P
Sbjct: 466 ASDGLP 471



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/284 (9%), Positives = 67/284 (23%), Gaps = 19/284 (6%)

Query: 171 RNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP 230
             R++ GF   G     R +     +          +       S++ +        +S 
Sbjct: 88  AQRDYPGFGESGEFAFGRREGANIVILLSGRHVNRGVPVSVPWESTLAEPMRRALRGES- 146

Query: 231 PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG 290
              +   +  ++           L       +   E   P         ++         
Sbjct: 147 -GTVIDLDYRAAKVLAAFEPVRRLNAGVVAKIDLAEIRRPFLRAAGVCFVSLLLMIAIGA 205

Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFL 349
           +L                               +++++ P+  F+    G + Y NP F 
Sbjct: 206 SLFRR---------ISVPLIEGEKAMGELRKLHQSIEQSPLMIFITDREGRIEYVNPRFC 256

Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
            +T Y   + I    G +  +             +           A  +    +    +
Sbjct: 257 EITGYSVDEVI----GRNPRILNSGDMPREFFAELWSTLLSGRQFKAEIK---DRRKDGS 309

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
           S     +     N+         +  +    +  ++  +    Q
Sbjct: 310 SFWAQIVTSPVRNKEGLITHFVAVHEDITQRKQAEQATQAAREQ 353


>gi|114563977|ref|YP_751491.1| multi-sensor hybrid histidine kinase [Shewanella frigidimarina NCIMB
            400]
 gi|114335270|gb|ABI72652.1| multi-sensor hybrid histidine kinase [Shewanella frigidimarina NCIMB
            400]
          Length = 1632

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 121/771 (15%), Positives = 264/771 (34%), Gaps = 62/771 (8%)

Query: 90   DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI-LHIDPNNH-IGDLLKRQNTWYGKT 147
            D  G +   ++      G    ++IG++           D  N     +L  ++     +
Sbjct: 366  DCDGVITSWNDGAVMMFGYEKHEVIGLKKTTFIVPNDGYDAENEKFNQVLNGKSLLNFVS 425

Query: 148  TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK----RLDKK 203
                 +     +   + +L IY+   +  G      +    V  +           L++K
Sbjct: 426  QHKRKDNEL--LSTSMTSLAIYNEFGKIIGVSQ--TIRDITVQLNAEKQILNINASLERK 481

Query: 204  FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR------------------MKNKVSSLTE 245
             +   +  +   S  K   D  +QQ                          + ++     
Sbjct: 482  VTERTQALQQALSENKTLLDNINQQLLYSETDKNGVILVVNDNFCQTSGFTREQMIGKKH 541

Query: 246  YYAHKDDVLKTEKYPLLTSEESSLPEQEDF--HTINLNQYTKKQYFGTLQNNSKESFEYL 303
                 ++  +     +  +  +     E+        N          + + +      +
Sbjct: 542  SILKSNEHDRAFWKQMWQTIHAGETWHEEICNRDKQGNIKWLDTVITPVMDENGNLVRCI 601

Query: 304  SHRNHPSLSAYFDEGENLTPETVDKCPIP------FFVYSHGNLFYANPSFLLLTKYKSV 357
            + R   +        +N     +                + G +   N    LL  Y++ 
Sbjct: 602  ALRIDITERKNSQLEKNKLASLLTNVLAAATEIAIISTDNDGIINIFNRGAQLLLGYQAE 661

Query: 358  DDIE-IAGGLSTLLDAPKLSDNNAIKPV--------MLYRSDRTCIAASARLHTIQWNRE 408
            + +   +  +  L    +       +          +     RT      R  T      
Sbjct: 662  EIVGKQSPAILHLPSEIRQRSKELTEEFGEDISAFDVFVYKPRTQGP-ETRTWTYIRKDL 720

Query: 409  NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468
            +   ++       +Q  E +   G+          + ++     QL    E    GI  +
Sbjct: 721  SQCQVSLSVSAMRDQSGEIVGYLGVAVNIDQMLKQQEELVSASNQLSKAAEVAELGIWNL 780

Query: 469  NREGIILSTNRAVSKLFGYP----VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
            + +   L  N  +  ++ YP     + +  + +   +  +   +    L + + L++   
Sbjct: 781  DLDTDNLQWNDRMFAMYDYPLALTEKGLNYQHWQKRVHPDDIEMAELALQQAIDLNIPYE 840

Query: 525  LEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKES 582
                 + S+ + + +     I                DI+E ++ +  L  AK+ A+  S
Sbjct: 841  PTFRIITSSNQIRYIHAGAQISYDKTGKPVRVVGINRDITEQRELEQTLRLAKQAADAAS 900

Query: 583  SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
            + KS FLA +SHEIRTP+ A++G  ++I++         +  +Y    + +   +L ++N
Sbjct: 901  AAKSAFLANMSHEIRTPMNAVLGMLQLIQHSDMSR----QQADYVTKAENAAKSLLGLLN 956

Query: 643  DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADL 701
            D+LD SKI++GK+ L   P  L+  + E   ++    + + + +       IP  I  D 
Sbjct: 957  DILDFSKIDAGKLELDLHPFQLETLMRELAVMLAANVHSQHLEVIFDLDPAIPYLIEGDE 1016

Query: 702  RSVKQIALNILSNAIHFTPSGGQIIISTTHTS----NEEVILRVRDTGVGMTNYELEKAM 757
              ++Q+ LN+  NAI FT  G  +I+             + + + D+G+G++  +  K  
Sbjct: 1017 LRLRQVLLNLAGNAIKFTSEG-HVIVGVQCNECTANQVNLTISITDSGIGISPEQSSKIF 1075

Query: 758  KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            + F Q  +S   R  GTGLGL + K++V+   G+  + S   +G+      
Sbjct: 1076 QGFVQAESSTSRRFGGTGLGLAITKSLVELMGGELSLSSHVGEGSRFWFEL 1126



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 64/447 (14%), Positives = 134/447 (29%), Gaps = 37/447 (8%)

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
            ++ +   N+                EF G RGFG +   RV  +  A      K     
Sbjct: 75  VIYTVGEDNISRDFFKKYSLTRDFESEFPGARGFGYIR--RVPANDEASFVAKAKLDDWP 132

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
               +  +  + E+Y I   +    +L       +  +   +            LT   +
Sbjct: 133 DFSVRQLTPHDDERYVIDYIEPVERNLAAVGLDIASEQNRKNAAQQAYLTGETRLTGPIT 192

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
            +          L      +   T    +    +       P ++    E  NL+ +T  
Sbjct: 193 LVQATGHPLQAFLILMPIYRTGLTPATPALREQQAFGWSYAPLVANEVFEQINLSRKTTK 252

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
                     +  +FY             VD++         LD         +  V   
Sbjct: 253 LLVNDVTDAQNNVMFY----------ETHVDEVNPLTSFVVTLDREIFGRKWQVSLVAY- 301

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
                   +   L + +        ++ +       +   + +  I  ED + R      
Sbjct: 302 ----PEFVSGLHLSSPKIVFSYGAIVSLLLGGLIGFYGYALGRKRIIMEDNERR------ 351

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT-P 506
                   +ILE + D I   + +G+I S N     +FGY   +++    T F+  N   
Sbjct: 352 -------ANILEHSLDAIISFDCDGVITSWNDGAVMMFGYEKHEVIGLKKTTFIVPNDGY 404

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDIS 562
              N    ++L+      L  ++    K+ +LLS  +    +       +    T+ DI+
Sbjct: 405 DAENEKFNQVLNGK--SLLNFVSQHKRKDNELLSTSMTSLAIYNEFGKIIGVSQTIRDIT 462

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFL 589
                + ++ +     E++ + ++  L
Sbjct: 463 VQLNAEKQILNINASLERKVTERTQAL 489



 Score = 76.2 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/385 (9%), Positives = 97/385 (25%), Gaps = 29/385 (7%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGK 146
             D +G +  +++   +T G    +MIG +   +    H       +   +    TW+ +
Sbjct: 511 ETDKNGVILVVNDNFCQTSGFTREQMIGKKHSILKSNEHDRAFWKQMWQTIHAGETWHEE 570

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                 +G   ++   +   P+   N          I    R ++               
Sbjct: 571 ICNRDKQGNIKWLDTVI--TPVMDENGNLVRCIALRIDITERKNSQLEKNKLASLLTNVL 628

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSP--PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
               +    S + +       +        + +  V   +    H    ++     L   
Sbjct: 629 AAATEIAIISTDNDGIINIFNRGAQLLLGYQAEEIVGKQSPAILHLPSEIRQRSKELTEE 688

Query: 265 EESSLPEQEDFH----------------TINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
               +   + F                   +L+Q         +++ S E   YL    +
Sbjct: 689 FGEDISAFDVFVYKPRTQGPETRTWTYIRKDLSQCQVSLSVSAMRDQSGEIVGYLGVAVN 748

Query: 309 PSLSAYFDEG----ENLTPETVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDIEIA 363
                   E      N   +  +   +  +           N     +  Y     +   
Sbjct: 749 IDQMLKQQEELVSASNQLSKAAEVAELGIWNLDLDTDNLQWNDRMFAMYDYPL--ALTEK 806

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
           G            D+  +  + L ++    I        I  +      +        ++
Sbjct: 807 GLNYQHWQKRVHPDDIEMAELALQQAIDLNIPYEPTFRIITSSN-QIRYIHAGAQISYDK 865

Query: 424 FPENMPQNGIEPEDVDTRINKRKME 448
             + +   GI  +  + R  ++ + 
Sbjct: 866 TGKPVRVVGINRDITEQRELEQTLR 890


>gi|71908619|ref|YP_286206.1| PAS [Dechloromonas aromatica RCB]
 gi|71848240|gb|AAZ47736.1| PAS protein [Dechloromonas aromatica RCB]
          Length = 1560

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 121/659 (18%), Positives = 224/659 (33%), Gaps = 49/659 (7%)

Query: 180  GFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK 239
            G G+    +       +  +  +     H      + V +              L +   
Sbjct: 567  GIGMQRSRQTLAHSEEMLLQAQRLARLGHFTFDAATDVLRGSPTHNELFGIEAGLEIDTD 626

Query: 240  VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
                  +   +  +    +  +    +    E       +                +   
Sbjct: 627  TWLSLIHPEDRQRMADYSRDHVFRGRQPFDTEYRVIRRNDGEVRWLHGAGQIEITANGRV 686

Query: 300  FEYLSHRNHPSLSAYFDEGENLTPETV-DKCPIPFFVYSHGNLFY----ANPSFLLLTKY 354
                      +   +F+   +   + + +   I        ++       +     +   
Sbjct: 687  ARLFGTSQDITERKHFERRLSRNEKALKEAQAIANLGSWTLDILSDKLTWSDEVYRIFGV 746

Query: 355  KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
                 ++    L   L      D + ++         +   +  R+       +    + 
Sbjct: 747  AKDQPLK----LGDFLARIHPDDRDRVQADWNAALQGSPYNSEHRITV----DQQVRWVR 798

Query: 415  FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII 474
                 + +         G   +  +    + ++     +L   +E T   I I N    I
Sbjct: 799  ERAHIRIDDEGRAAFAVGTVQDVTERHEAEEQLR----KLSLAIEQTPHSIVITNTAAKI 854

Query: 475  LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
               N A  +  GY   + +    +V     TP    + L + L     +      +   K
Sbjct: 855  EYVNEAFVRNTGYSRSEAIGSNPSVLHSGMTPGESYNELWQTLGRG--EVWHGEFMNRRK 912

Query: 535  EEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEK------------------NKLS 572
            +  +     II  +         Y     DI+E K+ +                   +L+
Sbjct: 913  DGSIYEEFAIISPVRQPDGKVTHYLAIKEDITEKKRIQSELNSYRQHLEQLVAERTEELN 972

Query: 573  HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
            HAK  AE  S  K+ FLA +SHEIRTP+ AIIG + + +     P  N R       +  
Sbjct: 973  HAKDEAESASRAKTAFLANMSHEIRTPMNAIIGLTHLAQRSTSDPEQNKR----LGKVAD 1028

Query: 633  SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
            + + ++ I+ND+LDISKIE+ K+ L     SL +  + A  LV   A+ KR+ +      
Sbjct: 1029 AAHHLMSIINDVLDISKIEANKLKLENTDFSLAQLCTAACELVTQRADAKRLPVTCIIDP 1088

Query: 693  NIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVILR--VRDTGVGM 748
             +P +L  D   ++QI LN LSNAI FT  G   I +     S + +++R  V DTG+G+
Sbjct: 1089 ALPPVLCGDPLRIQQILLNFLSNAIKFTERGKIDIRVQALQKSGDGILIRCAVSDTGIGI 1148

Query: 749  TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
             +    K   PF Q   S   R  GTGLGL +++ + +A  G+  + S   +G+     
Sbjct: 1149 ASDAQRKLFVPFEQGDASTTRRYGGTGLGLAISRRLAEAMHGEIGVDSKLGQGSTFWFT 1207



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/153 (10%), Positives = 50/153 (32%), Gaps = 5/153 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI-DPNNHIGDLLKRQNTWYGKT 147
            +    ++ ++E   +  G    + IG     +   +   +  N +   L R   W+G+ 
Sbjct: 848 TNTAAKIEYVNEAFVRNTGYSRSEAIGSNPSVLHSGMTPGESYNELWQTLGRGEVWHGEF 907

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                +G+       ++  P+   + + + +    I          ++      +    L
Sbjct: 908 MNRRKDGSIYEEFAIIS--PVRQPDGKVTHY--LAIKEDITEKKRIQSELNSYRQHLEQL 963

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV 240
              +    +  K++ +  S+        M +++
Sbjct: 964 VAERTEELNHAKDEAESASRAKTAFLANMSHEI 996



 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 38/412 (9%), Positives = 101/412 (24%), Gaps = 17/412 (4%)

Query: 182 GIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS 241
           G +  + V + P         K      I       + E   I ++ +    L  +    
Sbjct: 10  GDIMTSDVRSLPPQATLEDAAKLMAAEHISSLLVIADGEALGIVTESNILRALHARQPRE 69

Query: 242 SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301
           +  +    +  +       L+++             +     T            +    
Sbjct: 70  TRLDVIMSQPLITAPSDLNLISARRLVEERNIRHLVVKNPNGTVAGIVSDTDFRIRLGTA 129

Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIE 361
              H             +      +D+        +   L  +N          +  DI 
Sbjct: 130 AFQHLRTLEGIMDRQIPKLPPDALLDQAIACMVNNAADYLIVSNDDTP--LGILTERDIP 187

Query: 362 IAGGLSTLLDAPKLSDNNA-IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT--FIPF 418
               L   L    +        P+     + +   A   ++         L      +  
Sbjct: 188 RL--LDKFLTPHDVRLGETMSSPLRSVNVEMSVTGALEAMNRFHLRHMVVLDNNGKILGV 245

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA--IINREGIILS 476
               +  E +    +E      +  + ++ +E   L   L+    G      + +  I+S
Sbjct: 246 VSQRRLFEQLALERLENALHQMQQERDRLRLE-AHLQLALDVAGAGSWEYQHDTDRHIVS 304

Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
               V  L G   +D  R         +                   +         ++ 
Sbjct: 305 --DGVQALLGCTQDDTPRTLNEWMERIHPDDRHLLATAASADHGKTPSQVVEYRIRHQDG 362

Query: 537 KLLSL---RIIIKKLPFSSCYS--LTMHDISEWKQEKNKLSHAKKIAEKESS 583
             + +     + ++    S       ++DI+E +  + +++   +     ++
Sbjct: 363 HWIWVENRSCVTERNADGSPMVTAGILNDITERELARQQITRQNRALRMMTA 414



 Score = 46.9 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 36/407 (8%), Positives = 103/407 (25%), Gaps = 25/407 (6%)

Query: 104 KTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDL 163
           + +G      I   L                 L+   +     +    +E  N+   +  
Sbjct: 48  EALGIVTESNILRALHARQPRETRLDVIMSQPLITAPSDLNLISARRLVEERNIRHLV-- 105

Query: 164 AALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK---------FSHLHEIKKGH 214
               + + N   +G          R+        + L+              L +     
Sbjct: 106 ----VKNPNGTVAGIVSDTDFR-IRLGTAAFQHLRTLEGIMDRQIPKLPPDALLDQAIAC 160

Query: 215 SSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK----TEKYPLLTSEESSLP 270
                  Y I S    P  +  +  +  L + +    DV      +     +  E S   
Sbjct: 161 MVNNAADYLIVSNDDTPLGILTERDIPRLLDKFLTPHDVRLGETMSSPLRSVNVEMSVTG 220

Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD-KC 329
             E  +  +L         G +     +   +         +A     +      ++   
Sbjct: 221 ALEAMNRFHLRHMVVLDNNGKILGVVSQRRLFEQLALERLENALHQMQQERDRLRLEAHL 280

Query: 330 PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL---SDNNAIKPVML 386
            +   V   G+  Y + +   +        +      +       +     ++       
Sbjct: 281 QLALDVAGAGSWEYQHDTDRHIVSDGVQALLGCTQDDTPRTLNEWMERIHPDDRHLLATA 340

Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIP-FEKANQFPENMPQNGIEPEDVDTRINKR 445
             +D     +    + I+    + + +       + N     M   GI  +  +  + ++
Sbjct: 341 ASADHGKTPSQVVEYRIRHQDGHWIWVENRSCVTERNADGSPMVTAGILNDITERELARQ 400

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
           ++  +   L  +       +   + + ++        ++ GY +  +
Sbjct: 401 QITRQNRALRMMTAVAQILVRYTDEQQMLAEICTVAVEVGGYMMAWV 447


>gi|121997170|ref|YP_001001957.1| PAS/PAC sensor hybrid histidine kinase [Halorhodospira halophila
           SL1]
 gi|121588575|gb|ABM61155.1| PAS/PAC sensor hybrid histidine kinase [Halorhodospira halophila
           SL1]
          Length = 871

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 120/737 (16%), Positives = 244/737 (33%), Gaps = 40/737 (5%)

Query: 89  IDAH-GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
           ID   G + + +    +  G    ++ GMR+  ++ +        +      Q  ++   
Sbjct: 27  IDPETGAILDANPSAVRFYGYPREELCGMRIQQINTLDEPQVRAEMARARAEQRRYFRFQ 86

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                        +++ + P+    R++       I+H        +   +     F  L
Sbjct: 87  HRLC---GGEVRDVEVYSGPLELAGRQYLH----SIIHDITDTRRYQRRLEVFHDLFRSL 139

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
                 + +                 L      + L              +  +    E 
Sbjct: 140 P--VGIYRNTPGPSGRFLEVNPAMVELFEAESEAQLLATPVAALYRDPERRAEISALIER 197

Query: 268 SLP---EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
                  +    T+       +     +++       +       S         +    
Sbjct: 198 EGSVSWAELQARTLRGRPLWLRLSVRRVEDEHGR-TVFDGMVEDISAHVRLQGERDR--- 253

Query: 325 TVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
            ++        +   G   + NP+   L  + S +        +    +        ++ 
Sbjct: 254 LLEAINEGVCGLDDAGRFTFLNPAARQLLGFASEEAALGREAHALTHHSRPDGTPYPLEE 313

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
             ++R  R+     A              +        +             +    R  
Sbjct: 314 CPIFRVLRSGEPLEAWQDYFWRTDGRGFDVLVYAAPLRDVEGGITGIVLSFQDISRRRRI 373

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
           +R+      Q+  IL+     I     +  +L  NR V++LFG P   +  + +  +L  
Sbjct: 374 ERE----RDQMLEILDHHPHLIQRFLPDTTLLYANRMVAELFGIPPPQMDGRRWIEWLGP 429

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDI 561
                +  +L          T++   L +T E++ +              S +     DI
Sbjct: 430 EAREQLEAFLCRFTRAAPVGTVQLAVLAATGEQRRVQWTCQAFFDEDGLISHFQAVGIDI 489

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           +E    +       +   +    +  FLA VSH++RTPL AI GF+++++     P    
Sbjct: 490 TEQVAAE-------RARAQADRDRRTFLAAVSHDLRTPLNAIYGFTDLLQATELTP---- 538

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
           +  EY      +   +L +++ LLD+S++ESG++ LH EP  L E V   +++++  A E
Sbjct: 539 QQREYLGLCRSASEKLLALIDTLLDLSRMESGRLTLHDEPFELAEVVERQVAVLRAVAEE 598

Query: 682 KRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
             + +    A   P  +  D     Q+  N++SNAI FT  G ++++      +  + + 
Sbjct: 599 AGLRLTVREAPGTPQWVRGDATRFGQVVHNLISNAIQFTEHG-EVVLEVAPEGSGWLYVA 657

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V DTGVG+   + E   K F Q   S   R  G GLGL + + +V    G+  + S   K
Sbjct: 658 VHDTGVGIAPEDREHIFKAFAQGNPSF-RRQPGNGLGLRICQELVRLMGGRLEMTSELGK 716

Query: 801 GTLIEII--FPLYDTSH 815
           G+        P  +   
Sbjct: 717 GSTFYFTARLPRVEPPQ 733



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/113 (16%), Positives = 40/113 (35%), Gaps = 3/113 (2%)

Query: 466 AIINRE-GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
            +I+ E G IL  N +  + +GYP E++           + P V                
Sbjct: 25  LLIDPETGAILDANPSAVRFYGYPREELCGMRIQQINTLDEPQVRAEMARARAEQRRYFR 84

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI 577
            +    G   E + + +     +L         +HDI++ ++ + +L     +
Sbjct: 85  FQHRLCG--GEVRDVEVYSGPLELAGRQYLHSIIHDITDTRRYQRRLEVFHDL 135


>gi|51891887|ref|YP_074578.1| two-component sensor kinase [Symbiobacterium thermophilum IAM
           14863]
 gi|51855576|dbj|BAD39734.1| two-component sensor kinase, probably involved in phosphate sensing
           [Symbiobacterium thermophilum IAM 14863]
          Length = 444

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 87/395 (22%), Positives = 171/395 (43%), Gaps = 22/395 (5%)

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII 474
           +       +  E              +    ++  E  Q+  IL+  +DGI +++    I
Sbjct: 66  YREASGLARTAERRADAAHREARRAAQERLDRLLAEKAQMDLILQHMADGILLLDERRRI 125

Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
           +  N A  ++ G    + L +             ++  L  +L+    + L      +  
Sbjct: 126 VLVNPAAERMLGVSRHEALGRDHLEVTHHF---ELDERLARVLATGRPEAL--EIRRAHP 180

Query: 535 EEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
           +E++L  R+ +          + + DI+  +Q +                +++F+A V+H
Sbjct: 181 QEQILEARLALAPSGGERGVLVMLRDITRSRQLE--------------QMRTEFVANVTH 226

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           E+RTPLT+I GF+E +               +   + R    +  ++++LLD+S++ESGK
Sbjct: 227 ELRTPLTSIQGFAETLLEGALDE--PETARHFVEIMLRESRHLGALIDELLDLSRVESGK 284

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714
             +   P    E ++   +     A    + + T   + +P I  D   + Q+  N++ N
Sbjct: 285 FRMQRRPTVPAELIAATAARFAQKAERAGVQLVTEAPDGLPLINGDPDRLVQVLSNLVEN 344

Query: 715 AIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           AI +TP+GG+I +S      + V + V DTG G+   +L +  + F ++  ++     GT
Sbjct: 345 AIKYTPAGGRITLS-ARRDGDGVRIAVADTGAGIPQADLGRIFERFYRVDKARSRATGGT 403

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GLGL +AK +V+A+ G   + S   KG+   +I P
Sbjct: 404 GLGLAIAKHIVEAHGGTIGVESEVGKGSTFTVILP 438



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/241 (9%), Positives = 51/241 (21%), Gaps = 14/241 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D    +  ++    + +G    + +G    +V+    +D    +  +L        +  
Sbjct: 119 LDERRRIVLVNPAAERMLGVSRHEALGRDHLEVTHHFELD--ERLARVLATGRPEALEIR 176

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +   L     LA  P               ++           +        +H  
Sbjct: 177 RAHPQEQILEAR--LALAPSGGERGVLV------MLRDITRSRQLEQMRTEFVANVTHEL 228

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
                      E     +   P         +   + +       L  E   L   E   
Sbjct: 229 RTPLTSIQGFAETLLEGALDEPETARHFVEIMLRESRHL----GALIDELLDLSRVESGK 284

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
              Q                F      +       +    P ++   D    +    V+ 
Sbjct: 285 FRMQRRPTVPAELIAATAARFAQKAERAGVQLVTEAPDGLPLINGDPDRLVQVLSNLVEN 344

Query: 329 C 329
            
Sbjct: 345 A 345



 Score = 46.9 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 17/217 (7%), Positives = 45/217 (20%), Gaps = 6/217 (2%)

Query: 223 DIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQ 282
             +        L     V+    Y A         + P        L          +  
Sbjct: 6   RPYRPALLWFALPPAAGVTVALAYAASGRLEAALARGPRALDLAVWLALLAALLIPPVYG 65

Query: 283 YTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-L 341
           Y +            ++    + R            +      +        +      +
Sbjct: 66  YREASGLARTAERRADAAHREARRAAQERLDRLLAEKAQMDLILQHMADGILLLDERRRI 125

Query: 342 FYANPSFLLLTKYKSVDDIE--IAGGLSTLLDAPKLSD---NNAIKPVMLYRSDRTCIAA 396
              NP+   +      + +               +L+        + + + R+       
Sbjct: 126 VLVNPAAERMLGVSRHEALGRDHLEVTHHFELDERLARVLATGRPEALEIRRAHPQEQIL 185

Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
            ARL       E  + +      ++ Q  +   +   
Sbjct: 186 EARLALAPSGGERGVLVMLRDITRSRQLEQMRTEFVA 222


>gi|209965987|ref|YP_002298902.1| sensor protein divL [Rhodospirillum centenum SW]
 gi|209959453|gb|ACJ00090.1| sensor protein divL [Rhodospirillum centenum SW]
          Length = 821

 Score =  358 bits (918), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 137/731 (18%), Positives = 268/731 (36%), Gaps = 42/731 (5%)

Query: 98  ISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNL 157
            S    + +     + +      ++       +     L +    +   T      G   
Sbjct: 98  ASPRFAEALAIPEVRRLEDVETALAPSDAAALHGSFRHLQETGAPFL-LTVCRADGGRVF 156

Query: 158 YVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD-------KKFSHLHEI 210
                LA     + + E         +          A G           ++ S   + 
Sbjct: 157 ----QLAGRRAGTDDGEHFDLLW---LRDITATAADLARGVEARNRAEEECRRLSLALDT 209

Query: 211 KKGHSSVEKEKYDIFSQQSPPPHL--RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
                 +      I         L       V  L          L   +  +     + 
Sbjct: 210 VPVPVWLRGSDLSIVWCNRAFARLLDAAPRAVVDLGLELPGGALTLPPRELAMRARNGAH 269

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
              +  +  ++ ++   +     L     +    L       ++   +   +   E +++
Sbjct: 270 AETESRYLVVDGDRRLFRLTEMPLDRPDLQLGFGLDITGEQEIADELERHVSAHAEVLEQ 329

Query: 329 CPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
                 ++     L + N ++  L     V  ++   G   LL+  +       +     
Sbjct: 330 LGSAIAIFGADTRLRFYNRAYAQLWGLDEV-WLDSEPGYGELLEDMRARRKLTEQVDFPR 388

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
              +     ++ L       E    M  +P  +  +        G      +   +   +
Sbjct: 389 WKRQRLAQFTSLL-------EPEEEMIHLPDGRTLRTLTVPHPFGGLMFVQEDVTHTLAL 441

Query: 448 EIEVMQLCSI----LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
           E     L ++    L+   + +A+   +G +   N A  +L+     D+  +P    L +
Sbjct: 442 ETSYNTLMAVQQETLDNLEEAVAVFGGDGRLKLHNPAFLRLWRLSEPDLAGEPHIAALIE 501

Query: 504 NTPSVMN-----HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM 558
               +M+           L   L   + + +     +  +L+   +            + 
Sbjct: 502 RVRPLMDVGGDWAARRAELVAGLLDRMPRTSRMERVDGSVLTYSQVPLP---DGAVLFSA 558

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            D+++  + +  L    +  E     KS+F+A VS+++RTPL AI+GF+E++ NQ FGPL
Sbjct: 559 MDVTDSARVEQALRATNEALETADRLKSEFIANVSYQLRTPLNAIMGFAEILNNQYFGPL 618

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
            NPR IEYA  +  +   +L +VND+LD++ IE+G M L   PV +   V+    L + +
Sbjct: 619 -NPRQIEYARGVLEASRRLLALVNDILDLATIEAGFMVLERAPVDVAGLVNGVAMLTRDW 677

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738
           A ++ + +RT     I  + AD + +KQ   N++SNA+ FTP+GG+II+S    + +EV+
Sbjct: 678 ARQQELDLRTDIPAGIGTLEADEKRLKQALFNLVSNAVRFTPAGGRIILS-ARRAGDEVV 736

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           L VRDTG+G+   + ++    F +     Q R  G GLGL L K+ ++ + G+  I S P
Sbjct: 737 LSVRDTGIGIPQDDQQRVFGRFERAH--HQSRSGGAGLGLSLVKSFIELHGGRVEIDSAP 794

Query: 799 AKGTLIEIIFP 809
             GT +    P
Sbjct: 795 EHGTEVRCHLP 805



 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/385 (9%), Positives = 99/385 (25%), Gaps = 32/385 (8%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            W   +   +   +    + +      ++ + L ++       P   +    +       
Sbjct: 214 VWLRGSDLSIVWCNRAFARLLDAAPRAVVDLGL-ELPGGALTLPPRELAMRARNGAHAET 272

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           ++    ++G        L  +P+   + +     GFG + +         L + +     
Sbjct: 273 ESRYLVVDGD--RRLFRLTEMPLDRPDLQL----GFG-LDITGEQEIADELERHVSAHAE 325

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE-------- 257
            L ++    +    +    F  ++      +          Y    + ++          
Sbjct: 326 VLEQLGSAIAIFGADTRLRFYNRAYAQLWGLDEVWLDSEPGYGELLEDMRARRKLTEQVD 385

Query: 258 -----KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
                +  L        PE+E  H  +                     +        +L 
Sbjct: 386 FPRWKRQRLAQFTSLLEPEEEMIHLPDGRTLRTLTVPHPFGGLMFVQEDVTHT---LALE 442

Query: 313 AYFDEGENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
             ++    +  ET+D       V+   G L   NP+FL L +    D        +  L 
Sbjct: 443 TSYNTLMAVQQETLDNLEEAVAVFGGDGRLKLHNPAFLRLWRLSEPDLAGEPHIAA--LI 500

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
                  +        R++           T +  R +   +T+      +         
Sbjct: 501 ERVRPLMDVGGDWAARRAELVAGLLDRMPRTSRMERVDGSVLTYSQVPLPDGA-----VL 555

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCS 456
               +  D+   ++ +      L +
Sbjct: 556 FSAMDVTDSARVEQALRATNEALET 580



 Score = 41.6 bits (96), Expect = 0.54,   Method: Composition-based stats.
 Identities = 27/209 (12%), Positives = 58/209 (27%), Gaps = 6/209 (2%)

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
                    I   A +  +  +              A           +       R + 
Sbjct: 7   TYLAGIGAGILGLAGVAFLALSGSGLPPALLAVAVLALVLGLGGGLLRVRVLAEADRADA 66

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            + E EV  L +++ A+ D     +  G   + +   ++    P    L +     L  +
Sbjct: 67  LRAEGEVRNLRALVAASPDPWCAWSTGGA-QAASPRFAEALAIPEVRRL-EDVETALAPS 124

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY-SLTMHDISE 563
             + ++     +        L   T+      ++  L            +  L + DI+ 
Sbjct: 125 DAAALHGSFRHLQETGAPFLL---TVCRADGGRVFQLAGRRAGTDDGEHFDLLWLRDITA 181

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARV 592
              +  +   A+  AE+E    S  L  V
Sbjct: 182 TAADLARGVEARNRAEEECRRLSLALDTV 210


>gi|253996018|ref|YP_003048082.1| multi-sensor hybrid histidine kinase [Methylotenera mobilis JLW8]
 gi|253982697|gb|ACT47555.1| multi-sensor hybrid histidine kinase [Methylotenera mobilis JLW8]
          Length = 1230

 Score =  358 bits (918), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 119/553 (21%), Positives = 227/553 (41%), Gaps = 30/553 (5%)

Query: 270 PEQEDFHTINLNQYTKKQYFG--TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
             + +    + + +  +   G   L N +              +     E +      + 
Sbjct: 349 GREVEGLRKDGSLFPIRLAIGKVVLSNETLFVGFITDLTPRREMEIAVREKDEQLQSMIA 408

Query: 328 KCPIPFFVYSHG---NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
             P   F  ++    ++ + +     LT +++ D ++       + +A  L+       +
Sbjct: 409 NIPGIAFRCNYDINWSMQFISNRVFQLTGWQAQDFLDGTIHFPKITNADDLAKVTPT--I 466

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
                +        R   I         ++       ++    +  +G+  +  +++   
Sbjct: 467 ETAIKNHQHYNVEYR---ITDRNGEEKWVSEFGSGIYDENNNIVMLDGVIIDITESKRRN 523

Query: 445 RKMEIEVMQLCSILEAT--SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
                       I+ A   S  IA  + +G+IL+ N+    L GY +E+++    ++F  
Sbjct: 524 AA-------YQGIVRAINYSTSIAEFSVDGLILTANQNFLSLLGYTLEEVIGLHHSIFCS 576

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTM 558
           +        Y  +  SL   + +    L   K+ + + +      +           + M
Sbjct: 577 EEDAKSAR-YKNKWRSLRNGEFVHGEFLRLGKDRREVWINAFYSPVKDFDNKIDKVIMFM 635

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            DI+E K+ +N L  AK IAE+ +S KS FLA +SHEIRTP+ AIIGF+E++ +    P 
Sbjct: 636 IDITERKKMENDLREAKNIAEQAASVKSTFLANMSHEIRTPMNAIIGFTELMLDTEMKP- 694

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
                  Y + I+ S   +L ++ND+LD +K+E G + L F   S++  V   IS + L 
Sbjct: 695 ---DQQNYVSTINNSAKSLLHLLNDILDSAKLEKGMLELEFFDFSMNTLVDSVISTLWLQ 751

Query: 679 ANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737
           A +K + ++    + +          ++Q+ +N++ NAI FT  G  + +     + + +
Sbjct: 752 ARKKELDLQLEICDEVSGYYYGPSHRIRQVLMNLVGNAIKFTDIGS-VKLKVYAQNQDVI 810

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
              V DTG+G+    L+   +PF Q   S   R  GTGLG  ++K +V+A  G     S 
Sbjct: 811 HFDVVDTGIGIAADRLDAIFEPFTQADASMSRRFGGTGLGTTISKQLVEAMGGTIKATSQ 870

Query: 798 PAKGTLIEIIFPL 810
             KG+   I  PL
Sbjct: 871 LGKGSCFSINLPL 883



 Score =  104 bits (260), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 63/156 (40%), Gaps = 11/156 (7%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +     ++    +L +IL    DGI  IN +G ILS N    +LFG+  ++++ +   + 
Sbjct: 262 KQTLATLQASETRLSTILNTAIDGIITINTKGNILSFNTVAEQLFGWTADEVIGRNINIL 321

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTL--EKITLGSTKEEKLLSLRIIIKK--LPFSSCYSL 556
           +     S  + YL   L     + +   +   G  K+  L  +R+ I K  L   + +  
Sbjct: 322 MPNPHHSNHDEYLNNYLKSGQAKIIGVGREVEGLRKDGSLFPIRLAIGKVVLSNETLFVG 381

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
            + D++  ++ +           ++       +A +
Sbjct: 382 FITDLTPRREMEI-------AVREKDEQLQSMIANI 410



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/437 (8%), Positives = 109/437 (24%), Gaps = 50/437 (11%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD-ILHIDPNNHIGDLLKRQNT----W 143
           I+  G +   +    +  G  A ++IG  +  +     H + + ++ + LK         
Sbjct: 289 INTKGNILSFNTVAEQLFGWTADEVIGRNINILMPNPHHSNHDEYLNNYLKSGQAKIIGV 348

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +      +G+   + + +    + S    F GF     +       +     +  D++
Sbjct: 349 GREVEGLRKDGSLFPIRLAI-GKVVLSNETLFVGF-----ITDLTPRREMEIAVREKDEQ 402

Query: 204 FSHLHEIKKGHS--------SVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255
              +     G +           +   +   Q +        +      +     D    
Sbjct: 403 LQSMIANIPGIAFRCNYDINWSMQFISNRVFQLTGWQAQDFLDGTIHFPKITNADDLAKV 462

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
           T               +      N  +    ++   + + +             + S   
Sbjct: 463 TPTIETAIKNHQHYNVEYRITDRNGEEKWVSEFGSGIYDENNNIVMLDGVIIDITESKRR 522

Query: 316 DEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
           +         ++           G +  AN +FL L  Y   + I   G   ++  + + 
Sbjct: 523 NAAYQGIVRAINYSTSIAEFSVDGLILTANQNFLSLLGYTLEEVI---GLHHSIFCSEED 579

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
           + +   K       +   +                + +        +   +         
Sbjct: 580 AKSARYKNKWRSLRNGEFVHGE---FLRLGKDRREVWINAFYSPVKDFDNKIDKVIMFMI 636

Query: 436 EDVDTRINKRKMEIEV---MQLCSI----LEATS-------DGIAII-----------NR 470
           +  + +  +  +        Q  S+    L   S       + I              ++
Sbjct: 637 DITERKKMENDLREAKNIAEQAASVKSTFLANMSHEIRTPMNAIIGFTELMLDTEMKPDQ 696

Query: 471 EGIILSTNRAVSKLFGY 487
           +  + + N +   L   
Sbjct: 697 QNYVSTINNSAKSLLHL 713


>gi|259156567|gb|ACV96510.1| multi-sensor hybrid histidine kinase [Vibrio fluvialis Ind1]
          Length = 1252

 Score =  358 bits (918), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 126/676 (18%), Positives = 238/676 (35%), Gaps = 46/676 (6%)

Query: 164 AALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYD 223
           A        REF G  GFG++      N   A   R+  +    +   +  +  +   + 
Sbjct: 80  AYTQARDYKREFPGAHGFGLIIKV-EPNQTAAFLDRMAAERPSYNFQIRQLTPHQDSLFV 138

Query: 224 IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY 283
           I   +    +                            LT+  + +   E      L   
Sbjct: 139 ITYIEPEQNNREAVGVDIGSEAMRRKAALDAAFNNDVRLTAPITLVQANERAQQGFLMLM 198

Query: 284 TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY 343
              +     Q++ +           P L        N    +V       F+        
Sbjct: 199 PVYKTTTVPQDSRQRLEHLFGWSFAPILI-------NDVLNSVAGLENDVFLQISDITEQ 251

Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403
               F       + D         ++               +     R+  +   ++  +
Sbjct: 252 TPIEFFSQEVKDTYDAALQHKLNLSVFGRQWQLSLTPTNRFINELQLRSGTSLFFQVMAV 311

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ---------- 453
                  + +  +   + +Q   +  +     E    +    ++E +V            
Sbjct: 312 STILAFGVYLLQLMLMRRSQLIRHKQELASIAEQTLLK-ANAELEQQVALRTAEISRVNI 370

Query: 454 -LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH- 511
              SIL +    I   + EGII + N A  KL GY  E++L +              +  
Sbjct: 371 LQRSILSSAGYAIIATDEEGIITAFNPAAEKLLGYRAEEVLFQQTPSIFHLPAEVEHHAA 430

Query: 512 -------------YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----Y 554
                        + T +    L QT        TK  + + +++ +  L         +
Sbjct: 431 KLTTELGSNIAVGFETLVAKARLGQTDNARWTYLTKTGEQVQVKLNVSALKDEQGQLAGF 490

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                D+++  + + +L+ AK+ AE  +  KS+FLA +SHEIRTP+  ++G  +++ N  
Sbjct: 491 LGIAFDLTKQLKYEAELAQAKEQAESANKAKSEFLANMSHEIRTPMNGVLGLLQLVANST 550

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                + R  +Y      +   +L ++ND+LD SKIE+GK+ L   P SL + + +   +
Sbjct: 551 L----DQRQADYIEKAYSAAKSLLTLLNDILDFSKIEAGKLELDPHPFSLTDLLQDIGLV 606

Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHT 732
               A +K + +      ++P  +L D   +KQ+ +N++ NAI FT  G   I I +   
Sbjct: 607 FSSSAEQKGLEVLYDVTADVPEHLLGDSFRIKQVLINLVGNAIKFTDKGEILISIRSQSL 666

Query: 733 SNEEV--ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
              E+     ++DTG+G+T  +       F Q  +S   R  GTGLGL ++K +V+   G
Sbjct: 667 PEGEINLSFSIKDTGIGITLEQQNALFSGFQQADSSISRRYGGTGLGLAISKRLVNLMGG 726

Query: 791 KFYIFSTPAKGTLIEI 806
           +  + S    G+    
Sbjct: 727 EIGVESEFGCGSTFSF 742



 Score = 45.8 bits (107), Expect = 0.030,   Method: Composition-based stats.
 Identities = 17/152 (11%), Positives = 40/152 (26%), Gaps = 17/152 (11%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMI--------------GMRLCDVSDILHIDPNNHIG 134
            D  G +   +    K +G  A +++                    ++  L  +      
Sbjct: 386 TDEEGIITAFNPAAEKLLGYRAEEVLFQQTPSIFHLPAEVEHHAAKLTTELGSNIAVGFE 445

Query: 135 DLLKRQNTWYGKTTLW-PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193
            L+ +          W  +  T   V + L    +     + +GF G  I          
Sbjct: 446 TLVAKARLGQTDNARWTYLTKTGEQVQVKLNVSALKDEQGQLAGFLG--IAFDLTKQLKY 503

Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF 225
            A   +  ++    ++ K    +    +    
Sbjct: 504 EAELAQAKEQAESANKAKSEFLANMSHEIRTP 535


>gi|301059563|ref|ZP_07200475.1| PAS domain S-box protein [delta proteobacterium NaphS2]
 gi|300446328|gb|EFK10181.1| PAS domain S-box protein [delta proteobacterium NaphS2]
          Length = 1141

 Score =  358 bits (918), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 89/372 (23%), Positives = 161/372 (43%), Gaps = 16/372 (4%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           +K+     +  +ILE+  +G   ++  G +   N +V ++ GY  +++       + +  
Sbjct: 449 QKIHESEEKYRTILESIEEGYFEVDLAGRLTFFNDSVCRILGYTPDELKGMENRDYTDPE 508

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHD 560
           T   M     E              +   K+ +  +L +    L  S      +   + D
Sbjct: 509 TSRRMYRAFNETYRTGRPANFLGYRITR-KDGEQRNLELTASLLKNSEGEPSGFRGVIRD 567

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           ++  K+ +  L   K  AE  +  KS FLA +SHEIRTPL  IIG +E+   +      +
Sbjct: 568 VTGRKRAEA-LHREKLTAEAANRAKSQFLANMSHEIRTPLNGIIGMTELAMMRDM----D 622

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
            ++      I    N +L I+ND+LD SKIE+  + L          V   +      A 
Sbjct: 623 SKHRNILQTIQTESNSLLVIINDILDFSKIEAEMLQLEEISFDPASVVENVVKAFVHRAE 682

Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE--- 736
           +K + I  S   +IP  ++ D   ++QI +N++ NA+ FT  G +I I      + +   
Sbjct: 683 QKGLGITVSMERDIPDGVIGDPGRLRQILINLVGNAVKFTQKG-EIGIEARVAEDLDKRI 741

Query: 737 -VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            +   V+DTG+G+   + +   K F Q  +S   +  GTGLG  ++K + +   G+  + 
Sbjct: 742 KLRFAVKDTGIGIPQDKKKTIFKSFTQADSSTTRKYGGTGLGTTISKHLAELMGGEIGVE 801

Query: 796 STPAKGTLIEII 807
           S    G++    
Sbjct: 802 SEVGTGSIFWFT 813



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 19/115 (16%), Positives = 39/115 (33%), Gaps = 6/115 (5%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYG 145
           + +D  G L   ++ + + +G    ++ GM   D +D            +  +       
Sbjct: 470 FEVDLAGRLTFFNDSVCRILGYTPDELKGMENRDYTDPETSRRMYRAFNETYRTGRPANF 529

Query: 146 KTTLW-PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199
                   +G    +  +L A  + +   E SGFRG  ++          AL + 
Sbjct: 530 LGYRITRKDGEQRNL--ELTASLLKNSEGEPSGFRG--VIRDVTGRKRAEALHRE 580



 Score = 48.5 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/141 (12%), Positives = 34/141 (24%), Gaps = 10/141 (7%)

Query: 317 EGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
           E E      ++     +F V   G L + N S   +  Y   +     G  +     P+ 
Sbjct: 453 ESEEKYRTILESIEEGYFEVDLAGRLTFFNDSVCRILGYTPDEL---KGMENRDYTDPET 509

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
           S     +                    I         +        N   E     G+  
Sbjct: 510 SR-RMYRAFNETYRTGRPANFLGY--RITRKDGEQRNLELTASLLKNSEGEPSGFRGVIR 566

Query: 436 EDVDTRINKRKMEIEVMQLCS 456
           +    +  +    +   +L +
Sbjct: 567 DVTGRKRAEA---LHREKLTA 584


>gi|121603008|ref|YP_980337.1| PAS/PAC sensor hybrid histidine kinase [Polaromonas
           naphthalenivorans CJ2]
 gi|120591977|gb|ABM35416.1| PAS/PAC sensor hybrid histidine kinase [Polaromonas
           naphthalenivorans CJ2]
          Length = 930

 Score =  358 bits (918), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 108/759 (14%), Positives = 221/759 (29%), Gaps = 49/759 (6%)

Query: 82  TVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ- 140
            V   W       L   ++     +G      +G  L +    +  +    +   L  + 
Sbjct: 38  PVFLAW--GPELSLLY-NDAYLDILGERHPAALGRPLYEAWAEIRAEIEPLVNQALSGEP 94

Query: 141 NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
             +         +G +       +  P+   +   +G   +  +             +  
Sbjct: 95  VYFEDAVFTLRRKGADEQAWFSFSYAPVDGPDGTVAGL--YCNLTETTAKVLAEKNRQAE 152

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFS-------------------QQSPPPHLRMKNKVS 241
            ++   L E      +V      ++                     +     +  +  V+
Sbjct: 153 TRRLYSLFEQAPSFMAVVHGSSHVYELANSAYLRMAGCQDLVGKTFREAVQGIEDQGYVA 212

Query: 242 SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301
            L + YA     +      + +      PEQ     I             +     +  E
Sbjct: 213 LLDQVYATGQPFIGNRMPVIFSRHADGPPEQCFVDFIFQPITAPDGVVNGIFIEGNDVTE 272

Query: 302 YLSHRNHPS-LSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDD 359
            +   +          E        +   P+   +    G     NP+   L       +
Sbjct: 273 QVRTEDDLRKSRIAGLETAQQLNALLQAAPVAIVMADMHGKPLRFNPASRQLWGDHPASE 332

Query: 360 ----IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
                    G              A +  +                           +  
Sbjct: 333 SIAGYAERKGWWADGSVRHGCRLEAHEWALARALQGEEAPRDTVEIEPFGKPGIRRTILN 392

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
                 N   + +     + +  D    +  +   V Q  +I  A    +     +G   
Sbjct: 393 CGAPVRNLDGDIIGSVAAQMDISDRVAIEAALRETVTQYRTITNAIPQIVWATRPDGYHD 452

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
             N+      G P +  + + +                   L+       E         
Sbjct: 453 YFNQQWYDYTGVPQDSTVGEGWKGLFHLEDQLQAAKNWRHSLATGEP--YEIEYRLRHHS 510

Query: 536 EKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
            +          +         +  T  DI E K  +  L        +    K +FLA 
Sbjct: 511 GQYRWNLGRALPVRNEQGAIVRWMGTCTDIHEQKLAQEGL-------LQADRLKDEFLAM 563

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           ++HE+R PL  I   + ++      P G  R  E    I R    +  +++DLLD+S++ 
Sbjct: 564 LAHELRNPLAPIATAAHLLSTGTLDPEGLSRLSE---VISRQAGHMTRLIDDLLDVSRVT 620

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
            G++ L   P+ ++  V+EA+  V+     K   +    +     +  D   + Q+  N+
Sbjct: 621 WGQVTLDKNPLDMNSIVTEAVEQVRPLLQAKSQHLDIQLSPQRNLVSGDRMRLVQVLANV 680

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           L+NA+ +TP GG+I +      +  + + VRD G+GM+   L  A + F Q   +     
Sbjct: 681 LNNAVKYTPDGGRITLRV-VEDDSHLTVCVRDNGIGMSRELLAIAFELFTQGERTSDRTQ 739

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFP 809
            G G+GL L + +V  + G   + S     G+ + ++ P
Sbjct: 740 GGLGIGLALVQTLVHLHGGTVRLHSEGAGLGSELTMVLP 778



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/434 (9%), Positives = 104/434 (23%), Gaps = 34/434 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH-IDPNNHIGDLLKRQNTWY 144
            W     GY    +++     G      +G     +  +   +    +    L     + 
Sbjct: 442 VWATRPDGYHDYFNQQWYDYTGVPQDSTVGEGWKGLFHLEDQLQAAKNWRHSLATGEPYE 501

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            +  L    G   Y      ALP+ +        R  G           +    + D+  
Sbjct: 502 IEYRLRHHSG--QYRWNLGRALPVRNEQGAIV--RWMGTCTDIHEQKLAQEGLLQADRLK 557

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
                +               +       L     +S L+E  + +   +      LL  
Sbjct: 558 DEFLAMLAHELRNPLAPIATAAHLLSTGTLD-PEGLSRLSEVISRQAGHMTRLIDDLLDV 616

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
              +  +               +    ++   +   ++L  +  P  +    +   L   
Sbjct: 617 SRVTWGQVTLDKNPLDMNSIVTEAVEQVRPLLQAKSQHLDIQLSPQRNLVSGDRMRLVQV 676

Query: 325 TVDKCPIPF-FVYSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
             +       +    G +          LT     + I ++  L  +             
Sbjct: 677 LANVLNNAVKYTPDGGRITLRVVEDDSHLTVCVRDNGIGMSRELLAIAFELFTQGERTSD 736

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
                R+        A + T+      ++ +        ++    +P+     +D   R 
Sbjct: 737 -----RTQGGLGIGLALVQTLVHLHGGTVRLHSEGAGLGSELTMVLPRL--PQDDGPRRF 789

Query: 443 NKRKMEI--EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +            L          + +++        N   ++L G    ++L     V 
Sbjct: 790 DAGDALAVPARESLR---------VMVVDD-------NVDAARLLGM-FVELLGHEVFVQ 832

Query: 501 LEQNTPSVMNHYLT 514
               +     H + 
Sbjct: 833 FHPASAIECAHQVQ 846


>gi|309388338|gb|ADO76218.1| PAS/PAC sensor hybrid histidine kinase [Halanaerobium praevalens
           DSM 2228]
          Length = 921

 Score =  358 bits (918), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 112/565 (19%), Positives = 215/565 (38%), Gaps = 46/565 (8%)

Query: 272 QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI 331
           +E             +    L+          +           ++ E      +     
Sbjct: 86  EEVLEFPTGTTVWATKLSPVLEAGEVNYIVGSARNISQRKKLEEEKEELSRRYKLATSAA 145

Query: 332 PFFVYSHGNL---FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388
              V+    +      +   L + +     D         +                   
Sbjct: 146 AIGVWKLDLVTDELIWDEYMLKIYEIDDHSDYSYQSWTEHIYIKD---RKETSSKFKKAV 202

Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
           ++        R+ T          +        N   +     G+  +  + +  ++   
Sbjct: 203 ANGQIFDHEFRIITKS---GTFKYIKSFGKPVKNAEGKTKEVIGVNYDITERKKYEK--- 256

Query: 449 IEVMQLCSILEATSDGIAIINREG-IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
               +   I + +  G+A+IN      +  N  V +L GY  E+  +     +     PS
Sbjct: 257 ----KFKRIFDESLFGLALINPRTTKAVEFNNTVCELLGYTREEFAQLKIEDYEALADPS 312

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI--IIKKLPFSSCYSLTMHDISE-- 563
            +   L ++   +    L+  T    K+  L+ + I      L   +   +   DI+E  
Sbjct: 313 SIRFKLEKLAEGEK---LKFETKHIKKDGSLIDVLIKASSINLNGLNLVQIVYVDITEKV 369

Query: 564 ------------WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
                        K +  +L  A+  A + S  KS+FL+ +SHEIRTP+ +IIG +E+++
Sbjct: 370 EALNKMEEYSNELKLKNLELKQARDKAMEASRAKSEFLSTMSHEIRTPMNSIIGMAELLQ 429

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
                   + +  +Y N    +G  +L ++ND+LD+SKIE+G++ L  E  +L E V   
Sbjct: 430 ETEL----SEQQQKYINIFQNAGESLLTLINDILDLSKIEAGRIELEAEKFNLVETVENI 485

Query: 672 ISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-----QI 725
             ++ L A +K + +    A  +P  ++ D   ++QI +N+L NA+ FT  G      +I
Sbjct: 486 AEMISLRAFKKGLELPLRIAAEVPECVIGDSERIRQILINLLGNAVKFTEKGQVFLDLRI 545

Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
                    ++VI  ++DTG+G+   + ++    F Q  +S   +  GTGLGL ++K +V
Sbjct: 546 DSEFKSKDQKQVIFAIKDTGIGIEKAKQKQIFDSFTQADSSSTRKYGGTGLGLTISKQLV 605

Query: 786 DANMGKFYIFSTPAKGTLIEIIFPL 810
           +   GK ++ STP  G+      PL
Sbjct: 606 ELMGGKIWLKSTPQLGSTFYFSLPL 630



 Score = 47.3 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 43/140 (30%), Gaps = 8/140 (5%)

Query: 451 VMQLCSILEATSDGIAII----NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
             +   +   T D + II    N++   L  N    KL G   E+I  K     L     
Sbjct: 7   KKEYEIVFNNTQDALFIIEVDQNKDFRFLKLNPTHEKLTGLKTENIYGKTPVEVLGAEMG 66

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR--IIIKKLPFSSCYSLTMHDISEW 564
             +       L     QT+    +        +       + +    +    +  +IS+ 
Sbjct: 67  QAVQACYQRCLDQK--QTINYEEVLEFPTGTTVWATKLSPVLEAGEVNYIVGSARNISQR 124

Query: 565 KQEKNKLSHAKKIAEKESSH 584
           K+ + +     +  +  +S 
Sbjct: 125 KKLEEEKEELSRRYKLATSA 144



 Score = 40.0 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 37/380 (9%), Positives = 92/380 (24%), Gaps = 27/380 (7%)

Query: 85  FTWNIDA--HGYLKEISEELPKTIGNYAFKMIGMRLCDVS-DILHIDPNNHIGDLLKRQN 141
           F   +D        +++    K  G     + G    +V    +           L ++ 
Sbjct: 22  FIIEVDQNKDFRFLKLNPTHEKLTGLKTENIYGKTPVEVLGAEMGQAVQACYQRCLDQKQ 81

Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
           T   +  L    GT ++        P+     E +   G    ++++         +   
Sbjct: 82  TINYEEVLEFPTGTTVWAT---KLSPVL-EAGEVNYIVGSAR-NISQRKKLEEEKEELSR 136

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS----SLTEYYAHKDDVLKTE 257
           +          G   ++    ++   +       + +       S TE+   KD    + 
Sbjct: 137 RYKLATSAAAIGVWKLDLVTDELIWDEYMLKIYEIDDHSDYSYQSWTEHIYIKDRKETSS 196

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
           K+    +       +    T +      K +   ++N   ++ E +      +      +
Sbjct: 197 KFKKAVANGQIFDHEFRIITKSGTFKYIKSFGKPVKNAEGKTKEVIGVNYDITERK---K 253

Query: 318 GENLTPETVDKCPIPFFVY--SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
            E       D+      +           N +   L  Y   +        + L      
Sbjct: 254 YEKKFKRIFDESLFGLALINPRTTKAVEFNNTVCELLGYTREE-------FAQLKIEDYE 306

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
           +  +                       I+ +      +        N          +  
Sbjct: 307 ALADPSSIRFKLEKLAEGEKLKFETKHIKKDGSLIDVLIKASSINLNGLN---LVQIVYV 363

Query: 436 EDVDTRINKRKMEIEVMQLC 455
           +  +      KME    +L 
Sbjct: 364 DITEKVEALNKMEEYSNELK 383


>gi|298675021|ref|YP_003726771.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalobium evestigatum Z-7303]
 gi|298288009|gb|ADI73975.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalobium evestigatum Z-7303]
          Length = 370

 Score =  358 bits (918), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 112/365 (30%), Positives = 178/365 (48%), Gaps = 7/365 (1%)

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
           +    +  +++E  +D I   + +G I+  N    +  GY   ++L          N   
Sbjct: 2   KESEERFRTVIELAADAIIAHDFDGDIVYVNELAYENLGYTKSELLSMNIMDIEPYNENY 61

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK--LPFSSCYSLTMHDISEWK 565
                    LS  +  +    T    K   +  + + I +  L           DI+  K
Sbjct: 62  NSRKRYRNKLS--IHNSYRIETSHERKYGSIYPVEVKITRIDLDSEPVILGFCRDITTRK 119

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           Q +  L  AK  AE  S  KS+ LA VSHE+RTPLT+IIGFS+++   + G L N   I 
Sbjct: 120 QAEENLIIAKLEAEATSQAKSELLANVSHELRTPLTSIIGFSDIMLKGKAGKLNN-NQIN 178

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           Y N I +SG  +LD++NDLLD+SKIESGKM LH+E +SL E + + ++ +   A+EK + 
Sbjct: 179 YLNKIHKSGQNLLDLINDLLDLSKIESGKMELHYEKISLTEIIEDLMAKLSPLASEKGLT 238

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           + +    +I  +  D   ++QI  N++ NAI FT +G  I        N      V DTG
Sbjct: 239 LDSKINPDIEYVCMDNIKLRQILYNLIYNAIKFTNNGS-ITTEVDFVDNNY-QFSVIDTG 296

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+   + ++  + F Q+ +S + R  GTGLGL L K +V+ + G   + S   +G+   
Sbjct: 297 IGIPEDKQDEIFESFKQLDSSTKRRHAGTGLGLTLVKRLVEIHGGYIEVESKYGEGSRFT 356

Query: 806 IIFPL 810
              P+
Sbjct: 357 FTIPM 361



 Score = 41.9 bits (97), Expect = 0.48,   Method: Composition-based stats.
 Identities = 15/138 (10%), Positives = 40/138 (28%), Gaps = 9/138 (6%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI-LHIDPNNHIGDLLKRQNTWYGKTT 148
           D  G +  ++E   + +G    +++ M + D+     + +      + L   N++  +T+
Sbjct: 23  DFDGDIVYVNELAYENLGYTKSELLSMNIMDIEPYNENYNSRKRYRNKLSIHNSYRIETS 82

Query: 149 LWPIEGTNLYVPIDLAALPI-YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                G+    P+++    I         GF                        +    
Sbjct: 83  HERKYGSIY--PVEVKITRIDLDSEPVILGF-----CRDITTRKQAEENLIIAKLEAEAT 135

Query: 208 HEIKKGHSSVEKEKYDIF 225
            + K    +    +    
Sbjct: 136 SQAKSELLANVSHELRTP 153


>gi|120435203|ref|YP_860889.1| two-component system sensor histidine kinase/response regulator
           hybrid [Gramella forsetii KT0803]
 gi|117577353|emb|CAL65822.1| two-component system sensor histidine kinase/response regulator
           hybrid [Gramella forsetii KT0803]
          Length = 1202

 Score =  358 bits (918), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 135/712 (18%), Positives = 258/712 (36%), Gaps = 54/712 (7%)

Query: 133 IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192
             + L++   +  +  +  +   N  + +     P +   +    +  F  +  N     
Sbjct: 216 FNEALEKGIPFDAELKI--VTAKNNEIWVRSFGKPEFKDGKCIRIYGAFQDI--NTEKRI 271

Query: 193 PRALGKRLDKKFSH---------LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL 243
                +  ++  +          L +       V      IF  +       M      L
Sbjct: 272 QLEYERTKEQYETIFKNSAVGNILVKTSGQLLQVNPATLKIFGFEDAKREEVMGLTFKDL 331

Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ----NNSKES 299
                    +    K  LL+ E      +  ++  N            ++      S   
Sbjct: 332 IHPDFLDQSITYRSK--LLSGELDQYQFEAKYYKKNGEIVWCHSNSSIIRSNDYGESLII 389

Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVD 358
            +         L    +E         +  PI    V   G     N +   +  Y   +
Sbjct: 390 TQIEDITEKKELEFKANENAKRFKTAFEYSPIGMGVVSPEGIWQMVNQNLAGIFGYTKEE 449

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
            +      S+ L   +    ++     L        +   R   I  + +    +     
Sbjct: 450 FVNKK---SSELTHAEDLRKDSNMLKSLLEKKIESYSIEKRF--IHQSGKTIYGL-LSVS 503

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINREGIILST 477
             ++     +   G   +      +++ +E  + +L S+++AT+   I   + +GI+   
Sbjct: 504 AVSDDEGNTLYLIGQVSDLTKRITSEKALEKSLNELESLMDATTQVSIIQTDLDGIVAKF 563

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH------YLTEILSLD-------LRQT 524
           N+    L GY  +++        L ++    +        Y  EI               
Sbjct: 564 NKGAENLLGYSADEVKGVFNVKNLHEDHEIELRATELSEKYNQEIKGFGVFTFQASRGHY 623

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEK 580
             K      K+    ++++I+  +   +     Y     DI++ K+ +  L  AKK AE 
Sbjct: 624 DSKEWTYIRKDGTKFTVQLIVTPITDHNGKITGYLGVGSDITQLKKMEVSLIKAKKKAEA 683

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            S  KS+FLA +SHEIRTPL  IIGF++++              +Y   I  S   ++DI
Sbjct: 684 ASKSKSEFLANMSHEIRTPLNGIIGFTDLLMRSELEN----SQQKYMQTIYNSAISLMDI 739

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILA 699
           +ND+LD SKIE+GK+ L  E   L E   + I +V+  A++K + +  + +  + R + A
Sbjct: 740 INDVLDFSKIEAGKLELSEERTDLIELCDQTIDIVKHQAHKKGLEVLLNISPKLRRYVYA 799

Query: 700 DLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEE----VILRVRDTGVGMTNYELE 754
           D   ++QI  N+L N++ FT  G  ++ IS+   S  E     I  +RDTG+G+    L+
Sbjct: 800 DAVRLRQILTNLLGNSVKFTHEGEIELNISSKTISGNEHELLFIFSIRDTGIGIAPQNLK 859

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           K    F Q   S   +  G+GLGL ++  +++    K  + S   +G+    
Sbjct: 860 KIFSAFDQEDASTTRKYGGSGLGLTISNKLLNLMDSKLELTSVLNEGSTFSF 911



 Score = 55.4 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/379 (8%), Positives = 89/379 (23%), Gaps = 28/379 (7%)

Query: 93  GYLKEISEELPKTIGN---YAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ--NTWYGKT 147
           G L +++    K  G       +++G+   D+     +D +      L     + +  + 
Sbjct: 300 GQLLQVNPATLKIFGFEDAKREEVMGLTFKDLIHPDFLDQSITYRSKLLSGELDQYQFEA 359

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
             +   G    V     +  I S +  +        +       +         K+F   
Sbjct: 360 KYYKKNGEI--VWCHSNSSIIRSND--YGESLIITQIEDITEKKELEFKANENAKRFKTA 415

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLKTEKY--PLL 262
            E       V   +                  +  V+  +    H +D+ K       LL
Sbjct: 416 FEYSPIGMGVVSPEGIWQMVNQNLAGIFGYTKEEFVNKKSSELTHAEDLRKDSNMLKSLL 475

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE----SFEYLSHRNHPSLSAYFDEG 318
             +  S   ++ F   +            + ++         +        +     ++ 
Sbjct: 476 EKKIESYSIEKRFIHQSGKTIYGLLSVSAVSDDEGNTLYLIGQVSDLTKRITSEKALEKS 535

Query: 319 ENLTPETVDK-CPIPFFVYSHGNLFY-ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
            N     +D    +         +    N     L  Y + +   +    +   D     
Sbjct: 536 LNELESLMDATTQVSIIQTDLDGIVAKFNKGAENLLGYSADEVKGVFNVKNLHEDHEIEL 595

Query: 377 DNNAIKPVMLYRSDR--------TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
               +                  +     ++  T          +  I     +   +  
Sbjct: 596 RATELSEKYNQEIKGFGVFTFQASRGHYDSKEWTYIRKDGTKFTVQLIVTPITDHNGKIT 655

Query: 429 PQNGIEPEDVDTRINKRKM 447
              G+  +    +  +  +
Sbjct: 656 GYLGVGSDITQLKKMEVSL 674



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/217 (9%), Positives = 63/217 (29%), Gaps = 11/217 (5%)

Query: 51  QSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYA 110
           +     +  E  +N N    +  F + PI   V     +   G  + +++ L    G   
Sbjct: 393 EDITEKKELEFKANENAKRFKTAFEYSPIGMGV-----VSPEGIWQMVNQNLAGIFGYTK 447

Query: 111 FKMIGMRLCDVSDILHIDPNNH-IGDLLKRQ-NTWYGKTTLWPIEGTNLYVPIDLAALPI 168
            + +  +  +++    +  +++ +  LL+++  ++  +       G  +Y  + ++A  +
Sbjct: 448 EEFVNKKSSELTHAEDLRKDSNMLKSLLEKKIESYSIEKRFIHQSGKTIYGLLSVSA--V 505

Query: 169 YSRNREFSGFRG--FGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFS 226
                      G    +      +         L+       ++    + ++        
Sbjct: 506 SDDEGNTLYLIGQVSDLTKRITSEKALEKSLNELESLMDATTQVSIIQTDLDGIVAKFNK 565

Query: 227 QQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
                                 H+D  ++     L  
Sbjct: 566 GAENLLGYSADEVKGVFNVKNLHEDHEIELRATELSE 602



 Score = 43.1 bits (100), Expect = 0.21,   Method: Composition-based stats.
 Identities = 18/111 (16%), Positives = 38/111 (34%), Gaps = 18/111 (16%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIG--------------MRLCDVSDILHIDPN--N 131
             D  G + + ++     +G  A ++ G              +R  ++S+  + +     
Sbjct: 553 QTDLDGIVAKFNKGAENLLGYSADEVKGVFNVKNLHEDHEIELRATELSEKYNQEIKGFG 612

Query: 132 HIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFG 182
                  R +    + T    +GT     + L   PI   N + +G+ G G
Sbjct: 613 VFTFQASRGHYDSKEWTYIRKDGT--KFTVQLIVTPITDHNGKITGYLGVG 661


>gi|30248080|ref|NP_840150.1| sensory transduction histidine kinase [Nitrosomonas europaea ATCC
           19718]
 gi|30179965|emb|CAD83960.1| Sensory transduction histidine kinases [Nitrosomonas europaea ATCC
           19718]
          Length = 1229

 Score =  357 bits (917), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 104/430 (24%), Positives = 185/430 (43%), Gaps = 29/430 (6%)

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
           W+    LA  F    +         +  +            ++ I+  +  S++E   D 
Sbjct: 369 WDEIGQLASAFNMMTERLDISYRHLEARVAERTARLEQLNAELAIKEEETRSVVEHMVDC 428

Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI-------- 516
           +   +  G++LS N  + KLFGY VE+ + +   V + +    +  +Y+           
Sbjct: 429 VVTTDERGVMLSVNPVMEKLFGYTVEEAIGQNVAVLVPKPDRDMHEYYMQRYCHTGYGQQ 488

Query: 517 ------LSLDLRQTLEKITLGSTKEEKLLSLRIIIKK--LPFSSCYSLTMHDISEWKQEK 568
                         L +   G  K+  LL + + + +  +     ++  M D+ E  + +
Sbjct: 489 YVGRPQQPGGHHVGLGREVEGVHKDGTLLPVYLAVSEYFVGDKRHFTGIMRDMREHVKIR 548

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
             L  A++ AE  +  KS FLA +SHEIRTP+  +IG  +V+              E  +
Sbjct: 549 QDLEQARRDAELANQAKSAFLAAMSHEIRTPMNGVIGMIDVLSQTSLSSY----QKEMTD 604

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I  S  ++L+I+ D+LD SKIE+G++ +   P+SL++ V  A   +   A  K + +  
Sbjct: 605 LIRESAFVLLEIIEDILDFSKIEAGRLEIEQRPISLEKVVERACGTLTHMAASKEVELIL 664

Query: 689 SFANNIP-RILADLRSVKQIALNILSNAIHF---TPSGGQIIISTTHTSNEE-----VIL 739
                +P  +  D   ++QI +N+++NAI F       G +I+              V+ 
Sbjct: 665 FVDPALPKNVAGDALRLRQILINLINNAIKFSSGMSRPGCVIVKAVPADRANGDVVTVLF 724

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
           +V D G+GM +   E+   PF Q   S   R  GTGLGL + + +V+   G   + S P 
Sbjct: 725 QVIDNGIGMDDATRERLFTPFSQGDTSTTRRFGGTGLGLTICRRLVELMKGDITVESQPG 784

Query: 800 KGTLIEIIFP 809
           KG+  +   P
Sbjct: 785 KGSTFKARIP 794



 Score = 39.6 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 20/154 (12%), Positives = 45/154 (29%), Gaps = 23/154 (14%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID--------------PNNHIG 134
            D  G +  ++  + K  G    + IG  +  +      D                 ++G
Sbjct: 432 TDERGVMLSVNPVMEKLFGYTVEEAIGQNVAVLVPKPDRDMHEYYMQRYCHTGYGQQYVG 491

Query: 135 DLLKRQNTWYGKTTL---WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN 191
              +      G          +GT L V + ++   +  + R F+G     I+   R   
Sbjct: 492 RPQQPGGHHVGLGREVEGVHKDGTLLPVYLAVSEYFVGDK-RHFTG-----IMRDMREHV 545

Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF 225
             R   ++  +     ++ K    +    +    
Sbjct: 546 KIRQDLEQARRDAELANQAKSAFLAAMSHEIRTP 579


>gi|114330247|ref|YP_746469.1| multi-sensor hybrid histidine kinase [Nitrosomonas eutropha C91]
 gi|114307261|gb|ABI58504.1| multi-sensor hybrid histidine kinase [Nitrosomonas eutropha C91]
          Length = 1221

 Score =  357 bits (917), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 105/431 (24%), Positives = 193/431 (44%), Gaps = 31/431 (7%)

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
           W+    LA  F    +         +  +            ++ I+  +  S++E   D 
Sbjct: 369 WDEIGQLAGAFDMMTERLAISYRHLEARVAERTAQLERLNAELAIKEEETRSVVEHMVDC 428

Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ- 523
           +   +  G++LS N  + KLFGY VE+ + +  ++ + +   S+  +Y+         Q 
Sbjct: 429 VVSTDDRGVMLSVNPVMEKLFGYTVEEAIGQNVSILVPEPDRSMHEYYMQRYCETGYGQQ 488

Query: 524 -------------TLEKITLGSTKEEKLLSLRIIIKK--LPFSSCYSLTMHDISEWKQEK 568
                         L +   G  K+  ++ L + + +  +     ++  M D+ E  + +
Sbjct: 489 YVGRPQLPGGHNVGLGREVEGVRKDGTVIPLYLAVSEYFVGDERHFTGIMRDMREHVKIR 548

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
             L  A+  AE  +  KS FLA +SHEIRTP+  +IG  +V+              E  +
Sbjct: 549 QDLEQARHEAELANQAKSAFLAAMSHEIRTPMNGVIGMIDVLDQTSLSTY----QREMTD 604

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I  S   +L+I+ D+LD SKIE+G++ +   P+SL++ V  A   +   A  K + +  
Sbjct: 605 LIRESAFALLEIIEDILDFSKIEAGRLEIEQTPISLEKVVERACGTLTHMAASKEVELTL 664

Query: 689 SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSG----GQIIIST--THTSNEEVI--- 738
                +P  +L D   ++QI +N+++NAI F+ SG    G++ +        + +V+   
Sbjct: 665 FVDPALPEGVLGDALRLRQILINLINNAIKFS-SGMSRLGRVAVRASPAEEVDGDVVTVM 723

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
            +V D G+GM +   E+   PF Q   S   R  GTGLGL + + +V+   G+  + S P
Sbjct: 724 FQVIDNGIGMDDAARERLFTPFSQGDASTTRRFGGTGLGLIICRRLVELMKGEISVESKP 783

Query: 799 AKGTLIEIIFP 809
             G++  +  P
Sbjct: 784 DVGSVFTVRIP 794


>gi|189423630|ref|YP_001950807.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189419889|gb|ACD94287.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 704

 Score =  357 bits (917), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 103/372 (27%), Positives = 171/372 (45%), Gaps = 11/372 (2%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
           ++++E E  +L S+++A  D +  +  +G   +     S+    P E ++ +     L  
Sbjct: 192 EQELEQERNKLDSLIQAVPDLLFEVGLDGRYYACYARHSEQLAAPAEQLVGRTVREMLPP 251

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII--IKKLPFSSCYSLTMHDI 561
               V    L E  +       +      + E     L +      +     + +   DI
Sbjct: 252 RAAEVCLEALQEAEATGHSHGRQFFLPLPSGE-IWFELSVARKTGPVEDQPRFVVLSRDI 310

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           S+ KQ + +L  A+  AE  S  KS+FLA +SHEIRTP+  +IG + ++      P    
Sbjct: 311 SDRKQHEKELLEARYAAEAASRAKSEFLANMSHEIRTPMNGVIGMAHLLGTTELSP---- 366

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
              +Y   I+ S N ++ ++ D+LD+S+IE+G+M L     SL   + E +   Q   N+
Sbjct: 367 EQEQYLENIENSANSLITLIGDILDLSRIEAGRMLLENVDFSLRRCIQELLGSQQFQINQ 426

Query: 682 KRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL 739
           K+I I T  A ++P +   D    +QI LN+L NAI FT  GG  I      +    V++
Sbjct: 427 KKISIHTEIAEDVPDLLRGDQLRTRQILLNLLGNAIKFTEHGGVTITAQLVTSEENRVLI 486

Query: 740 --RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
              V DTG+GM    LE+   PF Q  NS   R  G+GLGL + + + +   G+ +  S 
Sbjct: 487 HLAVSDTGIGMPPDLLERIFAPFEQADNSTTRRYGGSGLGLAICRRLAELMGGRIWAESG 546

Query: 798 PAKGTLIEIIFP 809
              G+   +  P
Sbjct: 547 AEGGSTFHVELP 558



 Score = 38.5 bits (88), Expect = 4.5,   Method: Composition-based stats.
 Identities = 8/142 (5%), Positives = 33/142 (23%), Gaps = 6/142 (4%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144
             + +   G          + +   A +++G  + ++      +         +     +
Sbjct: 212 LLFEVGLDGRYYACYARHSEQLAAPAEQLVGRTVREMLPPRAAEVCLEALQEAEATGHSH 271

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIV-HVNRVDNDPRALGKRLDKK 203
           G+    P+   +  +  +L+   +  +         F ++                    
Sbjct: 272 GRQFFLPL--PSGEIWFELS---VARKTGPVEDQPRFVVLSRDISDRKQHEKELLEARYA 326

Query: 204 FSHLHEIKKGHSSVEKEKYDIF 225
                  K    +    +    
Sbjct: 327 AEAASRAKSEFLANMSHEIRTP 348


>gi|157693310|ref|YP_001487772.1| sensor histidine kinase PhoR [Bacillus pumilus SAFR-032]
 gi|157682068|gb|ABV63212.1| sensor histidine kinase PhoR [Bacillus pumilus SAFR-032]
          Length = 580

 Score =  357 bits (917), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 94/363 (25%), Positives = 158/363 (43%), Gaps = 23/363 (6%)

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
           E++  +L +++E    GI +I++ G I   NR   K F       + K +          
Sbjct: 236 EMQRDRLQTVIENIGAGIILIDKMGYIHLVNRTFRKQFKVQKHIYMHKLYHEAFTHEEII 295

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWK 565
            +      +    +R+ L    L    E +   +  +             L  HD++E K
Sbjct: 296 ELI-DEIFMTETKVRKFL---RLAVDIERRYFQVDGVPILSTDDEWKGIVLVFHDVTETK 351

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           Q +                + DF+A VSHE++TP+T+I GFSE + +            E
Sbjct: 352 QLE--------------QMRKDFVANVSHELKTPITSIKGFSETLLDGAID--DKEALTE 395

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           + + I +    +  ++ DLLD+SKIE  +  L+ +  +  E + E   L+   A EK I 
Sbjct: 396 FLSIILKESVRLETLIQDLLDLSKIEQQQFKLNIQEANATEILQEIQVLLNQKATEKGIQ 455

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +          ++AD   +KQI LN+++NA+ +TP GG + IS            V DTG
Sbjct: 456 LHVRVPKEPVYVMADPLRLKQIFLNLVNNALTYTPEGGSVTISARPRKGAY-EFDVADTG 514

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +GM   E+ +  + F +I   +     GTGLGL + K +V+A+ G   + S   KGT   
Sbjct: 515 IGMKKSEIPRIFERFYRIDKDRSRNSGGTGLGLAIVKHLVEAHEGTISVRSKQGKGTTFT 574

Query: 806 IIF 808
           +  
Sbjct: 575 VSL 577


>gi|95928637|ref|ZP_01311384.1| multi-sensor hybrid histidine kinase [Desulfuromonas acetoxidans
           DSM 684]
 gi|95135427|gb|EAT17079.1| multi-sensor hybrid histidine kinase [Desulfuromonas acetoxidans
           DSM 684]
          Length = 1079

 Score =  357 bits (917), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 105/544 (19%), Positives = 216/544 (39%), Gaps = 31/544 (5%)

Query: 277 TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY 336
           ++++ ++ + Q       +  E                    E      ++       + 
Sbjct: 411 SLDVTEHKRAQQQLQEAKDQLEVRVEERTGELKKAQKILASRERHFRRLIENVTDIITIV 470

Query: 337 SHGNLF-YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIA 395
               +  Y +P+   L   +SV+D+        ++       +       L++   T   
Sbjct: 471 DADGIVGYTSPAAEKLFG-RSVEDMVGHDIREFVVQDDLRHIDLP----TLHQQFGTTTP 525

Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
              R+    ++    + +     E+                    +      E E   L 
Sbjct: 526 VEYRV----YDHAGQIQVLESFIERFENESGLEQFILCSRLITQRKRA----EEENRVLS 577

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
            ++      + I +  G I   N    +  GY  ++++ K   V     TP  +   + +
Sbjct: 578 MVVAQNPSSVVITDVHGQIEYVNPYFEQATGYRFDEVVGKNPRVLNAGKTPKQVFTQMWQ 637

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKL 571
            +        +   +   K+  L    +++  +         +     +I+E K+     
Sbjct: 638 TILDG--HVWQGEFVNRKKDGTLYDESVLVSPIKNDQGEISHFVALKENITELKKA---- 691

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
              +K AE+ +  KS+FL+R+SHE+RTPL AI GFS+++ + R  PL N ++      ID
Sbjct: 692 ---RKQAEEANRAKSEFLSRMSHELRTPLNAINGFSQLMLSSRKNPL-NDKHRSMVEQID 747

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF- 690
            +G  +L+++N++LD+++IE+GK++L  E V     ++E + L+   A + ++   +   
Sbjct: 748 GAGKHLLELINEVLDLARIEAGKLSLSVEAVDPCHIINECLPLLHSLAEQHQVTFHSCCG 807

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST-THTSNEEVILRVRDTGVGMT 749
               P + AD    KQ+ +N+LSNA  +   GG + I    +     +  +V D G+G+ 
Sbjct: 808 EQTFPLVKADYTRTKQVLVNLLSNAAKYNRPGGDVTIHVQANEPTGFLRFQVIDNGLGIA 867

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             + ++   PF ++        EGTG+G+ + K +V+A  G+    S   +G+      P
Sbjct: 868 EEKQKQLFVPFARL-AQDSENIEGTGIGMTITKQLVEAMGGQIDFESRYGQGSTFWFTLP 926

Query: 810 LYDT 813
           L D 
Sbjct: 927 LADE 930



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/349 (9%), Positives = 93/349 (26%), Gaps = 48/349 (13%)

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGF--GIVHVNRVDNDPRAL------------- 196
           ++G  +Y  +++   PI++ + E      +   +    R     +               
Sbjct: 383 VDGETMY--VEVHGYPIFNDHGELVNIIEYSLDVTEHKRAQQQLQEAKDQLEVRVEERTG 440

Query: 197 --------GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTE 245
                       ++ F  L E      ++      +              +++ V     
Sbjct: 441 ELKKAQKILASRERHFRRLIENVTDIITIVDADGIVGYTSPAAEKLFGRSVEDMVGHDIR 500

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
            +  +DD+   +   L     ++ P +   +         + +    +N S    +++  
Sbjct: 501 EFVVQDDLRHIDLPTLHQQFGTTTPVEYRVYDHAGQIQVLESFIERFENESG-LEQFILC 559

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAG 364
               +     +E   +    V + P    +   HG + Y NP F   T Y+  + +    
Sbjct: 560 SRLITQRKRAEEENRVLSMVVAQNPSSVVITDVHGQIEYVNPYFEQATGYRFDEVVGKNP 619

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
            +         +       +     D             +         + +     N  
Sbjct: 620 RV----LNAGKTPKQVFTQMWQTILDGHVWQGE---FVNRKKDGTLYDESVLVSPIKNDQ 672

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVM-----------QLCSILEATS 462
            E      ++    + +  +++ E               +L + L A +
Sbjct: 673 GEISHFVALKENITELKKARKQAEEANRAKSEFLSRMSHELRTPLNAIN 721



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 28/258 (10%), Positives = 74/258 (28%), Gaps = 36/258 (13%)

Query: 337 SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA 396
             G L   N  F    +    + + I   +S LL    +    + +     +  +  +A 
Sbjct: 210 EAGRLQEYNKRFSETYRQT--ELLSIVLSVSLLLVIGGVVLYRSRRIFAERQRYQQELAT 267

Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
                                  +  +         +E E  + R  ++++  +   L +
Sbjct: 268 ---------------------INENLESMVQSRTRQLEGEISERRKTEQQLSEQARFLTT 306

Query: 457 ILEATSDGIAIIN-REGIILSTNRAVSKL---FGYPVEDILRKPFTVFLEQNTPSVMNHY 512
            LE+      +I+  +  ++  N A   L   +  P      +                 
Sbjct: 307 TLESLDHPFLVISVADSKVVMANSAARDLCDDWHQPTCYARTQRLNGNCSDGDHPCTLAR 366

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH----DISEWKQEK 568
           +   L       +    +    + + + + +    +       + +     D++E K+ +
Sbjct: 367 VKSELK-----PITIDYVHPNVDGETMYVEVHGYPIFNDHGELVNIIEYSLDVTEHKRAQ 421

Query: 569 NKLSHAKKIAEKESSHKS 586
            +L  AK   E     ++
Sbjct: 422 QQLQEAKDQLEVRVEERT 439



 Score = 57.7 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 17/150 (11%), Positives = 44/150 (29%), Gaps = 5/150 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGKT 147
            D HG ++ ++    +  G    +++G     ++           +   +   + W G+ 
Sbjct: 590 TDVHGQIEYVNPYFEQATGYRFDEVVGKNPRVLNAGKTPKQVFTQMWQTILDGHVWQGEF 649

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF--GIVHVNRVDNDPRALGKRLDKKFS 205
                +GT     + ++  PI +   E S F      I  + +         +   +  S
Sbjct: 650 VNRKKDGTLYDESVLVS--PIKNDQGEISHFVALKENITELKKARKQAEEANRAKSEFLS 707

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLR 235
            +    +   +       +       P   
Sbjct: 708 RMSHELRTPLNAINGFSQLMLSSRKNPLND 737


>gi|311747357|ref|ZP_07721142.1| sensory box sensor histidine kinase/response regulator
           [Algoriphagus sp. PR1]
 gi|311302642|gb|EAZ83239.2| sensory box sensor histidine kinase/response regulator
           [Algoriphagus sp. PR1]
          Length = 938

 Score =  357 bits (917), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 109/517 (21%), Positives = 211/517 (40%), Gaps = 28/517 (5%)

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEI 362
           +S RN+ +     +       E  D+  I       G +++ N +  +      V++I  
Sbjct: 280 VSLRNNLASQKVLENNSKEISELFDQQNI-LLKELKGFVYFHNSAGKITRVSDEVEEILG 338

Query: 363 AG---GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
                 L       + +D   I+  +      +          ++ + +    +      
Sbjct: 339 IPKSIFLDAFAPDSQQADVVKIREKVYEVLGSSKSHIEFEYDFVRPDGKEIR-VKVFEKL 397

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
             ++  +     GI  +      + +K+     +L  ++E   D I I + +G ++  + 
Sbjct: 398 IFHKNGKFNGGLGICTDITSQFESSQKLIQSENRLRVVMENIPDVIFIYDNDGNVID-SH 456

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK----E 535
              ++ G+    +  K  +V L  +      H           QT+++     +     E
Sbjct: 457 VKEQIPGWDKSSL-GKNISVLLPPDQRDETIHAFQLARKYGEIQTVDRRLNLPSGAKYFE 515

Query: 536 EKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
            +   L          +       D++  K  +  L  A K A++ S  KS+FLA +SHE
Sbjct: 516 IRYFPL--------DENRMMSLAKDVTNQKVWEKGLIEAMKAADEASRAKSEFLANMSHE 567

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           IRTP+  ++G  +++ +       +    +Y   I  SG+ +L I+ D+LD SKIE+GKM
Sbjct: 568 IRTPMNGLLGIIDLLDHTNL----DEEQSQYLEIIKNSGSSLLSIIKDILDYSKIEAGKM 623

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSN 714
           +L+    +  E + + I +    A EK I ++T            D   + Q+ LN++ N
Sbjct: 624 DLNPTLGNPAEELEKQIQIFYGLAQEKSITLKTDIGKAAYGLFETDFDRINQVILNLVGN 683

Query: 715 AIHFTPSGGQIIISTTHT----SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           A+ FTP  GQ+ +S            + ++V+D+G+G+    +     PF Q+ +S    
Sbjct: 684 ALKFTPQNGQVTVSMDAEQIENELHYLKIQVKDSGIGIPEKHIPSLTDPFFQVESSSTRS 743

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
            +GTGLGL +AK +V+   G+  I ST  +G+     
Sbjct: 744 YQGTGLGLAIAKKIVELMGGELNINSTVGEGSEFSFS 780


>gi|303246216|ref|ZP_07332496.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
 gi|302492279|gb|EFL52151.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
          Length = 928

 Score =  357 bits (917), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 117/526 (22%), Positives = 205/526 (38%), Gaps = 38/526 (7%)

Query: 322 TPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
               V+            G +   N  F  +        +             +L    +
Sbjct: 11  LKALVEALEDSILAADKFGRIMVCNDRFRAMWNLDDPALLGSDTAAFFDSITAQLDGCAS 70

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
            K      +  T     A    +       + +                +  I  +   T
Sbjct: 71  GKVYPEDFAPNTGDGEKAAPVVLSLKDGRVIEIRTAALFPGAGQD---GRLWIFRDVTAT 127

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK---PF 497
           R  +R ++  + QL  I+E   +   I++++GII+  N+A+  +     E I+ K    +
Sbjct: 128 RQRERYLQDSIRQLTDIIEFLPEPTMIVDKDGIIVVWNKAIEDVTEVKKEAIVGKGNYEY 187

Query: 498 TVFLEQNTPSVMNHYL--------TEILSLDLRQTLEKITLGST---KEEKLLSLRIIIK 546
            +        ++  ++                 + L            +   L       
Sbjct: 188 ALPFYNERRPILIDWVLDDRVPIEQYTFVQRKGEMLFGEIYTPNAFGGKGAYLWGVAAPL 247

Query: 547 KLPFSSCYSLT--MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
           K    +       M +++E K  + +L  AK  AE  +  KS+FLAR+SHEIRTP+ +I+
Sbjct: 248 KDSSGNIVGAVECMRNVTERKMVEQELHRAKLAAEAATRAKSEFLARMSHEIRTPMNSIL 307

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           G SE+++        +     Y   +  SG ++L I+ND+LD SKIE+G+++L   P  L
Sbjct: 308 GMSELLEETSL----DFDQKNYVQTLHSSGEMLLAIINDILDFSKIEAGQVDLECVPFDL 363

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG 723
            + V     ++ L A EK + +    A  + R +L D   ++QI +N+LSNAI FT  G 
Sbjct: 364 IDLVEGIGRILGLKAQEKGLKLTCWVAPEVHRHVLGDPTRLQQILINLLSNAIKFTEHG- 422

Query: 724 QIIISTTH----TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
           ++ +           E +++ V DTG+G+   + E   + F Q   S   +  GTGLGL 
Sbjct: 423 EVTLHILPGPLPADKETILVTVSDTGIGIPKDKQESVFESFSQADTSTTRKFGGTGLGLA 482

Query: 780 LAKAMVDANMGKFYIFSTPAKGTLI--EIIF------PLYDTSHPH 817
           ++K +++   G   I S    GT     +        P YD S  H
Sbjct: 483 ISKKLIELMDGGIRIESNEGAGTTFLLTVRLKHTNEPPAYDPSDTH 528



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/135 (12%), Positives = 43/135 (31%), Gaps = 6/135 (4%)

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ-----N 504
               L +++EA  D I   ++ G I+  N     ++      +L      F +      +
Sbjct: 7   SAEFLKALVEALEDSILAADKFGRIMVCNDRFRAMWNLDDPALLGSDTAAFFDSITAQLD 66

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR-IIIKKLPFSSCYSLTMHDISE 563
             +    Y  +              + S K+ +++ +R   +              D++ 
Sbjct: 67  GCASGKVYPEDFAPNTGDGEKAAPVVLSLKDGRVIEIRTAALFPGAGQDGRLWIFRDVTA 126

Query: 564 WKQEKNKLSHAKKIA 578
            +Q +  L  + +  
Sbjct: 127 TRQRERYLQDSIRQL 141


>gi|154251412|ref|YP_001412236.1| PAS/PAC sensor signal transduction histidine kinase [Parvibaculum
           lavamentivorans DS-1]
 gi|154155362|gb|ABS62579.1| PAS/PAC sensor signal transduction histidine kinase [Parvibaculum
           lavamentivorans DS-1]
          Length = 600

 Score =  357 bits (917), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 130/556 (23%), Positives = 223/556 (40%), Gaps = 50/556 (8%)

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTK 353
            +          +     A   E ++             + +  G    Y + +   +  
Sbjct: 59  LALAYMLVRLRESKLEAEAALVENQHRFDMAFAGARCGIWDWDLGENRIYWSSAMFDMVG 118

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
            K           + +       D  AI  +    S  +    +A    ++    + + M
Sbjct: 119 LKQPS---KRLSPNEIKAMAHPDDAGAIDEIANAASRPSRSYDTA--FRLRHADGSWVWM 173

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
                             GI  +  D +I + ++     +L   +E+  +   + + EG 
Sbjct: 174 HAKGQVWGGGRAAGERLVGITIDITDQKIAEERVHEANERLRDAIESVGEAFVLWDAEGR 233

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
           + + N    +       +    P     E    + +                        
Sbjct: 234 LATANSKFGEFLNL--GEDYMHPGAPRGEMMQRAGVGDAWPVSQDGGEAGAGVHEI--RL 289

Query: 534 KEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK------------------ 575
              + L +    ++   S  +     DI+  K+++  L+  K                  
Sbjct: 290 PTGRWLQIS---ERRTKSGGHVNVGTDITAIKEQEAALTDNKVALEKTVRDLETSRRKLQ 346

Query: 576 -----------------KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
                              AE  +  KS+FLA +SHE+RTPL AIIGFSE++++  FG L
Sbjct: 347 EQARQLVDLAEKYASEKTRAEAANRSKSEFLANMSHELRTPLNAIIGFSEIMESGLFGEL 406

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
           G+P+Y EYA  I  SG  +L+++ND+LD+SKIE+G+M L  +P+ L E V E++ LV   
Sbjct: 407 GSPKYKEYAGDIHASGTHLLELINDILDMSKIEAGRMTLETQPLELSEVVEESLRLVSGR 466

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738
           A   ++ I       +P + AD R+VKQ+ LN+LSNA+ FTP+GG I +    TS   V 
Sbjct: 467 AEVAKVHIANEMGP-LPTVDADKRAVKQVLLNLLSNAVKFTPAGGSIHLR-GETSGRFVT 524

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           + V DTG+G+    L K  +PF Q+ +      +GTGLGL L++++V+ + G   + ST 
Sbjct: 525 ISVEDTGIGIPASALPKIGRPFEQVESQHSKSHKGTGLGLALSRSLVELHGGALVLESTE 584

Query: 799 AKGTLIEIIFPLYDTS 814
             GT +    PL   +
Sbjct: 585 GVGTKVSFTLPLTAEA 600



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 9/173 (5%), Positives = 37/173 (21%), Gaps = 8/173 (4%)

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
                     +          +  +     +          GI   +     +  + A+ 
Sbjct: 55  SGGYLALAYMLVRLRESKLEAEAALVENQHRFDMAFAGARCGIWDWDLGENRIYWSSAMF 114

Query: 483 KLFGY--PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
            + G   P + +           +    ++            ++ +        +   + 
Sbjct: 115 DMVGLKQPSKRLSPNEIKAMAHPDDAGAIDEIANAA--SRPSRSYDTAFRLRHADGSWVW 172

Query: 541 LRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
           +    +                 DI++ K  + ++  A +          +  
Sbjct: 173 MHAKGQVWGGGRAAGERLVGITIDITDQKIAEERVHEANERLRDAIESVGEAF 225


>gi|312879472|ref|ZP_07739272.1| multi-sensor hybrid histidine kinase [Aminomonas paucivorans DSM
           12260]
 gi|310782763|gb|EFQ23161.1| multi-sensor hybrid histidine kinase [Aminomonas paucivorans DSM
           12260]
          Length = 925

 Score =  357 bits (917), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 125/644 (19%), Positives = 228/644 (35%), Gaps = 33/644 (5%)

Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS 242
           I    R       + K LD     L           +         +     R+      
Sbjct: 2   IFLPTRRRVSASPVPKVLDFPLMDLLHSCPDPIWCIRLPDFKLVFLT-LGAERLLGIPLG 60

Query: 243 LTEYYAHKDDVLKTEKYPL------LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS 296
                A   ++L  E  PL         E      +      +  +          ++  
Sbjct: 61  ELPLRASVGELLVPEDLPLWKRFLQEAQERGEARAELRVRRGDGGEVWLDLRGVLTRDER 120

Query: 297 KESF----EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLL 351
            +        +   +           E      ++     F +    G +   N +FL L
Sbjct: 121 GQPRYLTGIAVDVSDRRRAEDALRRSEARWRAVLNSTGDAFLMADQGGAITDCNEAFLRL 180

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411
             Y+  + +    GLS     P+           L      C         +       L
Sbjct: 181 GGYRKEEVL----GLSLRRVVPEDQLGILDYQWHLGALQGQCD----YEVDLLCRDGTRL 232

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471
            +         Q  E         +   +R  + +   +V  L ++L+     +   + +
Sbjct: 233 PVWVQADRV-LQEGEPPLLFAFLRDLSASRKVQEEQRHQVAFLRTLLDTIPSPVFYKDAQ 291

Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
           G  L  NRA   L G  ++++  +    FL  +    +     E+L      + E     
Sbjct: 292 GRYLGCNRAFLDLVGRDLKEVEGRTAQEFLPASLLPQVVRSDMELLRHPGTLSFETPWQA 351

Query: 532 STKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
               E+   ++             +   M +I+E K+ +  L  A+  AE  S  K  FL
Sbjct: 352 GKGGERHFVVQKASFGDEREGVLGFVGVMVEITERKRMEEDLREARDRAESSSEAKMAFL 411

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
           + +SHEIRTP+ AI+G SE++  +      +    E    I  +   +++++ D+LD+SK
Sbjct: 412 SHMSHEIRTPMNAIVGLSELLLEEC----PHDPQREQLRLIREASGSLMELLGDILDLSK 467

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIA 708
           IE+G++ L  EP  L+E      SL+ + A  K ++     A +     L D   ++Q+ 
Sbjct: 468 IEAGRLELDHEPFDLEETCRSVCSLLGMEAKRKGLVFSWDVAPSAQGFFLGDSFRLRQVL 527

Query: 709 LNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIP 764
            N++ NA+ FT  G ++ ++      E    +V  RV+DTG+G+    LE+  + F Q  
Sbjct: 528 WNLVGNAVKFTERG-RVHVTAWGEQGEGGARKVHFRVQDTGIGILPVNLERIFEYFSQGE 586

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
                R  GTGLGL +++ +V A  G+  + S P  G++     
Sbjct: 587 TLLHRRFPGTGLGLSISRHLVRAMGGEILVASEPGAGSVFSFSL 630



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/375 (10%), Positives = 95/375 (25%), Gaps = 21/375 (5%)

Query: 91  AHGYLKEISEELPKTIGNYAFKM-IGMRLCDVSDILHI-DPNNHIGDLLKRQNTWYGKTT 148
               L  ++    + +G    ++ +   + ++     +      + +  +R         
Sbjct: 40  PDFKLVFLTLGAERLLGIPLGELPLRASVGELLVPEDLPLWKRFLQEAQERGEARAELRV 99

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                G    V +DL  +       +     G  +              +R + ++  + 
Sbjct: 100 R---RGDGGEVWLDLRGVLTRDERGQPRYLTGIAV--DVSDRRRAEDALRRSEARWRAVL 154

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEKYPL-LTSE 265
                   +  +   I         L    K +V  L+      +D L    Y   L + 
Sbjct: 155 NSTGDAFLMADQGGAITDCNEAFLRLGGYRKEEVLGLSLRRVVPEDQLGILDYQWHLGAL 214

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL---T 322
           +     + D    +  +         +    +    +   R+  +     +E  +     
Sbjct: 215 QGQCDYEVDLLCRDGTRLPVWVQADRVLQEGEPPLLFAFLRDLSASRKVQEEQRHQVAFL 274

Query: 323 PETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
              +D  P P F     G     N +FL L      +     G  +       L      
Sbjct: 275 RTLLDTIPSPVFYKDAQGRYLGCNRAFLDLVGRDLKEV---EGRTAQEFLPASLLPQVVR 331

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
             + L R   T     +     Q  +              ++    +   G+  E  + +
Sbjct: 332 SDMELLRHPGTL----SFETPWQAGKGGERHFVVQKASFGDEREGVLGFVGVMVEITERK 387

Query: 442 INKRKMEIEVMQLCS 456
             +  +     +  S
Sbjct: 388 RMEEDLREARDRAES 402



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 33/352 (9%), Positives = 91/352 (25%), Gaps = 21/352 (5%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D  G + + +E   +  G    +++G+ L  V     +   ++   L   Q     +  L
Sbjct: 165 DQGGAITDCNEAFLRLGGYRKEEVLGLSLRRVVPEDQLGILDYQWHLGALQGQCDYEVDL 224

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
              +GT L V +    +    +  E      F  +         +   +        L +
Sbjct: 225 LCRDGTRLPVWVQADRVL---QEGEPPLL--FAFLRDLSASRKVQEEQRHQVAFLRTLLD 279

Query: 210 IKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
                   +  +                 +K       + +     + +  +  +     
Sbjct: 280 TIPSPVFYKDAQGRYLGCNRAFLDLVGRDLKEVEGRTAQEFLPASLLPQVVRSDMELLRH 339

Query: 267 S-SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
             +L  +  +      +        +  +  +    ++      +     +E      + 
Sbjct: 340 PGTLSFETPWQAGKGGERHFVVQKASFGDEREGVLGFVGVMVEITERKRMEEDLREARDR 399

Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
            +                   +FL    ++    +    GLS LL      D    +  +
Sbjct: 400 AESSSEAKM------------AFLSHMSHEIRTPMNAIVGLSELLLEECPHDPQREQLRL 447

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
           +  +  + +     +  +       L +   PF+            G+E + 
Sbjct: 448 IREASGSLMELLGDILDLSKIEAGRLELDHEPFDLEETCRSVCSLLGMEAKR 499



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/227 (13%), Positives = 52/227 (22%), Gaps = 15/227 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS-DILHIDPNNHIGDLLKRQNTWY 144
            +  DA G     +      +G    ++ G    +     L         +LL+   T  
Sbjct: 285 VFYKDAQGRYLGCNRAFLDLVGRDLKEVEGRTAQEFLPASLLPQVVRSDMELLRHPGTLS 344

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF-GIVHVNRVDNDPRALGKRLDKK 203
            +T  W          +   A   +   RE  G  GF G++             +    +
Sbjct: 345 FET-PWQAGKGGERHFVVQKAS--FGDERE--GVLGFVGVMVEITERKRMEEDLREARDR 399

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV-LKTEKYPLL 262
                E K    S    +          P   +      L E   H              
Sbjct: 400 AESSSEAKMAFLSHMSHEIR-------TPMNAIVGLSELLLEECPHDPQREQLRLIREAS 452

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
            S    L +  D   I   +         L+   +     L      
Sbjct: 453 GSLMELLGDILDLSKIEAGRLELDHEPFDLEETCRSVCSLLGMEAKR 499


>gi|37677132|ref|NP_937528.1| sensory box sensor histidine kinase/response regulator [Vibrio
           vulnificus YJ016]
 gi|37201677|dbj|BAC97498.1| sensory box sensor histidine kinase/response regulator [Vibrio
           vulnificus YJ016]
          Length = 1328

 Score =  357 bits (916), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 104/498 (20%), Positives = 198/498 (39%), Gaps = 27/498 (5%)

Query: 330 PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389
            +   +Y    L     +    T   S +  + +    ++L + K     +++       
Sbjct: 341 QVSIAIYRDDKLIRIAGAGYDDT--ISREISDQSSTQLSVLLSDKPYSMKSLQGKYTTHV 398

Query: 390 DRTCIAA-SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI---------EPEDVD 439
           +   +         +  N++    +     +             +               
Sbjct: 399 NGGVLELNEIYYFPLCVNKQPVALLELGTVDTLTPLQYQWLSQMLDDLSVSIQLSQNVEL 458

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
            R  ++K+  +      IL AT + +  ++ +G  L+ N   S+L G  + +I+ +    
Sbjct: 459 QRKAEQKVLEQSQLNQEILNATPNPMYCLSAQGKYLTVNAKFSELTGLAMHEIVGRTPIE 518

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YS 555
              Q   S     + + LS + + +          +     + +       S        
Sbjct: 519 VFSQQDASHHFTQVHQELSQE-QCSKNYELSLFDSQGGCRDMLVCEASFNNSQGRVSGIV 577

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
             + D++E KQ +++L  AK  A+  S  K DFLA +SHEIRTP+ AI+G + +  N   
Sbjct: 578 GILLDLTERKQMESELREAKDTADAMSRAKGDFLANMSHEIRTPMNAILGMAHLALNTEL 637

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
               +P   +Y   I+ S   +L I+ND+LD SKIE+GK+++     SLDE      +++
Sbjct: 638 ----DPSQRKYLTRINESAKNLLGIINDILDFSKIEAGKLSVESIDFSLDEVFENLTNVI 693

Query: 676 QLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIST----T 730
              A EK I         +P  ++ D   + Q+ +N+  NA+ FT  G +I++S      
Sbjct: 694 SFKAQEKGIEFLLDIDPRVPVGLVGDPLRLGQVLVNLCGNAVKFTEKG-EILVSVMPESQ 752

Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
            + +  +   V+DTG+G+   ++      F Q   S      GTGLGL ++K +V+   G
Sbjct: 753 SSDDVTLRFSVKDTGIGIDKEKIADLFNAFSQADTSITREFGGTGLGLSISKQLVELMGG 812

Query: 791 KFYIFSTPAKGTLIEIIF 808
           +  + S    G+      
Sbjct: 813 QLSVSSAVGMGSTFTFTI 830


>gi|160901448|ref|YP_001567030.1| PAS/PAC sensor hybrid histidine kinase [Delftia acidovorans SPH-1]
 gi|160367032|gb|ABX38645.1| PAS/PAC sensor hybrid histidine kinase [Delftia acidovorans SPH-1]
          Length = 1044

 Score =  357 bits (916), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 119/642 (18%), Positives = 230/642 (35%), Gaps = 37/642 (5%)

Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS 242
           I    +                  + + +    S       +    +     R  + +  
Sbjct: 257 IYRQVQRSESRLRAVVDTAVDGIVMIDGRGSIVSFNGAAERLLGWTAQEVLGRSASLLMP 316

Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE- 301
            +        + K           SS          +  Q   +   G +       F  
Sbjct: 317 ASGCDGEGGSLEKQLAAGFAGLLGSSR--DVHALHKDGTQIAVRLAVGRVAIAGDPLFVG 374

Query: 302 -YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG---NLFYANPSFLLLTKYKSV 357
                R    +       E      ++  P   F   +         + S   LT +   
Sbjct: 375 FVTDIRERRQMLQSLRRSEEQYRTLINNVPGTTFRCLYDGKWTPLLLSRSIKELTGWTEQ 434

Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
           D  +   G   L+ A       A     L R        +A    +  +      ++   
Sbjct: 435 DFTDGLTGWDRLIHAEDRDRLEAAVSHSLSRRQ----TYNADYRLLHRDGST-RWVSETG 489

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII--NREGIIL 475
               N+  E    +G+  +                +    + A    +A I  +  G +L
Sbjct: 490 RGVFNEHDELTWIDGVIMDQT-------AARARNAEFEGTVRAIDLSLATIEYDLLGQVL 542

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQ--NTPSVMNHYLTEILSLDLRQTLEKITLGST 533
             NR    LFGY ++++  +   +F E           +   +   + +       L   
Sbjct: 543 RANRNFLDLFGYRLDEVAGRHHGMFCEPGYAHTPEHEQFWRRLAEGEFQAG---EFLRCG 599

Query: 534 KEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
           +E + + ++     +  +          + DIS  ++   +L  AK+ AE  ++ +S FL
Sbjct: 600 REGRRIWVQATYNPIRDADGRPYKIVKLLTDISAQRKLAQELVLAKEHAEAAAAARSTFL 659

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
           A +SHEIRTP+ AIIGF+E ++     P        Y + +  +   +L ++ND+LD +K
Sbjct: 660 ANMSHEIRTPMNAIIGFTEALRETALQPT----QARYLDTVHYAARSMLRLLNDILDTAK 715

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIA 708
           ++ G + L  E  S+ E   + ++ +++ A+ K + +R  +  + P  +  D   V+QI 
Sbjct: 716 LDKGAVELEIEDFSVRELCQQILASLRITADRKGLDLRLDYDPHTPAALRGDGMRVQQIL 775

Query: 709 LNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
           +N+L NA+ FT  G  +++   +     + L V DTG+G+   ++ +   PF Q   S  
Sbjct: 776 VNLLGNAVKFTERG-HVLLRVRYE-QGVLQLDVHDTGIGIAPEKIHRIFDPFAQADASTT 833

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            R  GTGLG  +++ + +   G   + ST   GT+ E+  PL
Sbjct: 834 RRFGGTGLGTTISRQLAELMGGSIQLHSTVGVGTVFEVRLPL 875



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/372 (9%), Positives = 88/372 (23%), Gaps = 25/372 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN-----HIGDLLKRQNTW 143
           ID  G +   +    + +G  A +++G     +      D         +          
Sbjct: 282 IDGRGSIVSFNGAAERLLGWTAQEVLGRSASLLMPASGCDGEGGSLEKQLAAGFAGLLGS 341

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                    +GT + V + +  + I         F GF  V   R         +R +++
Sbjct: 342 SRDVHALHKDGTQIAVRLAVGRVAIAGD----PLFVGF--VTDIRERRQMLQSLRRSEEQ 395

Query: 204 FSHLHEIKKGHS--------SVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255
           +  L     G +                   + +        + ++        +D    
Sbjct: 396 YRTLINNVPGTTFRCLYDGKWTPLLLSRSIKELTGWTEQDFTDGLTGWDRLIHAEDRDRL 455

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
                   S   +          + +     +    + N   E           + +   
Sbjct: 456 EAAVSHSLSRRQTYNADYRLLHRDGSTRWVSETGRGVFNEHDELTWIDGVIMDQTAARAR 515

Query: 316 DEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
           +     T   +D           G +  AN +FL L  Y+  +      G   +   P  
Sbjct: 516 NAEFEGTVRAIDLSLATIEYDLLGQVLRANRNFLDLFGYRLDEVAGRHHG---MFCEPGY 572

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
           +     +      ++    A               + +        +          +  
Sbjct: 573 AHTPEHEQFWRRLAEGEFQAGE---FLRCGREGRRIWVQATYNPIRDADGRPYKIVKLLT 629

Query: 436 EDVDTRINKRKM 447
           +    R   +++
Sbjct: 630 DISAQRKLAQEL 641


>gi|295798149|emb|CAX68999.1| sensory transduction histidine kinase [uncultured bacterium]
          Length = 823

 Score =  357 bits (916), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 105/449 (23%), Positives = 194/449 (43%), Gaps = 25/449 (5%)

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
           +       +   D       A + + + +    L +  I     +     +       E 
Sbjct: 379 DEKGSVAAILAMDVKTEQFRAHVASARSDAH--LMLLIIGVLIVSATTIILSSEDSTKEI 436

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
            D      ++ + + +   +++   + I   + +GI   ++ +V K+ GY  ++++ K F
Sbjct: 437 KDNDE---RLRLAIERFNEVVDNALEWIWETDSKGIYTYSSASVEKILGYTPQEVVGKFF 493

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT 557
             F        +   L  +++               K+   + L      +       L 
Sbjct: 494 YDFYSNEEKERLKE-LAGLITKKKEPFHRFENRNIHKKGNFVWLLTSGIPMVDKQGNFLG 552

Query: 558 MH----DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
                 D+SE K+ + ++    K AE+ +  K+ FLA +SHEI +PL AI+GFSE++   
Sbjct: 553 YRGSNLDVSERKKIEERMEQEHKWAEEANKAKAKFLAHMSHEIVSPLNAIVGFSELLMKT 612

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
                 N    EY + I  +  L+L I+ND+LD SKI++ ++       +L+  +  ++ 
Sbjct: 613 PL----NDTQKEYLSIIRETEQLLLSIINDILDFSKIDAKQLTFEEIEFNLESLIENSLL 668

Query: 674 LVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
           +V+  A E  + +       IP++   D   +KQ+ LN+LSNA+ FT  G  I IS    
Sbjct: 669 VVKGKAKE-NVSLAFKIDETIPKVYKGDPTRLKQVILNLLSNALKFTTQGS-IEISVNTE 726

Query: 733 ----SNEEV----ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
                +E+V     + V+DTG+G+   + +    PF Q   S      GTGLGL +A+A+
Sbjct: 727 KHFLEDEQVFRVLQVSVKDTGIGIPLEKQKIIFDPFIQADGSVTRTYGGTGLGLSIARAL 786

Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
           V+   GK ++ S+P KG+       L + 
Sbjct: 787 VERMGGKIWVTSSPGKGSTFAFTVQLKEA 815



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 19/140 (13%), Positives = 48/140 (34%), Gaps = 6/140 (4%)

Query: 80  PRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL-- 137
              + + W  D+ G     S  + K +G    +++G    D       +    +  L+  
Sbjct: 455 DNALEWIWETDSKGIYTYSSASVEKILGYTPQEVVGKFFYDFYSNEEKERLKELAGLITK 514

Query: 138 KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRG--FGIVHVNRVDNDPRA 195
           K++     +      +G   +V +  + +P+  +   F G+RG    +    +++     
Sbjct: 515 KKEPFHRFENRNIHKKGN--FVWLLTSGIPMVDKQGNFLGYRGSNLDVSERKKIEERMEQ 572

Query: 196 LGKRLDKKFSHLHEIKKGHS 215
             K  ++      +     S
Sbjct: 573 EHKWAEEANKAKAKFLAHMS 592


>gi|119487002|ref|ZP_01620874.1| two-component system sensory histidine kinase [Lyngbya sp. PCC
           8106]
 gi|119455931|gb|EAW37065.1| two-component system sensory histidine kinase [Lyngbya sp. PCC
           8106]
          Length = 1236

 Score =  357 bits (916), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 107/401 (26%), Positives = 181/401 (45%), Gaps = 17/401 (4%)

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
           +          +    ++ +  +  +     +  SI E  ++GI     +G  LS N A+
Sbjct: 526 DSIALLKMVAEMFSNTIERKRTEAVIRQTEAKYRSIFENAAEGICQTTPQGRYLSANPAL 585

Query: 482 SKLFGY--PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
           +++ GY  P + I             P+    ++ E+ +  +    E        +  ++
Sbjct: 586 AQILGYATPADLIEGITDIKTQVYIKPNRRAEFIAEMQANSVVSGFESQVYRQ--DGNII 643

Query: 540 SLRIIIKKLPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
            +    + +  ++        T+ DI+E K     L  AK+ A   S  KS FLA +SHE
Sbjct: 644 WISENARVVRDATGQIICYEGTVEDITERKAASVALKQAKEAAIAASRAKSTFLANMSHE 703

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           +RTPL AIIG+SE++  +           +    I  +G  +L ++ND+LDISKIE+G+M
Sbjct: 704 LRTPLNAIIGYSEILTEEAEDSGYRHIVPD-LERICTAGRNLLTLINDILDISKIEAGRM 762

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715
           +L+ E  S+   +   IS  Q   +     +    ++ I  + AD+  V+QI LN+LSNA
Sbjct: 763 DLYLEDFSISALIESVISTAQPLVDRNSNTLEVECSDQIDILYADITKVRQILLNLLSNA 822

Query: 716 IHFTPSGGQIIISTTHTSNEE-------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
             FT +G QI +  +    E        +  +V DTG+GM+  +L+   +PF Q   S  
Sbjct: 823 AKFTTAG-QIKLKVSPQPAEFPNTAPSLIQFQVSDTGIGMSPEQLDLLFQPFTQGDASTT 881

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            R  GTGLGL +++       G   I S    G+   +I P
Sbjct: 882 RRYGGTGLGLTISQRFCQMMGGTITIDSQLDCGSTFTVILP 922



 Score = 98.9 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 41/354 (11%), Positives = 103/354 (29%), Gaps = 12/354 (3%)

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY---FGTLQNNSKESFEYLS 304
                 LK       T   +++  QE    I+ +     Q           S      L 
Sbjct: 3   PLLQRQLKRLALSENTPPSNAVAWQEFLDRISRSYTEADQERYLMERSLTLSSREMLQLY 62

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIA 363
            +             +     +        +   +G L   NP    L  +K  + +   
Sbjct: 63  EQQRQETETRLATERDRLQAVISSLGAGLCILDPNGCLLSMNPEAERLLGWKQTELLGQP 122

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT----IQWNRENSLAMTFIPFE 419
                   +   + +             +       L +     +   +  LA++++   
Sbjct: 123 LLQRIASHSQLSTVDFPCTFQDCSDCSSSESPYPQILKSSDDQFRCKNDAILAVSYVLNP 182

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
             +     +    +  +  D +  + + E  +  L +   AT  GI  ++R G + + N+
Sbjct: 183 ILDHE-TLIGAALVFLDITDRKRAQLEAERSLSLLQATFNATDAGIVALDRGGKVCNFNQ 241

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSV--MNHYLTEILSLDLRQTLEKITLGSTKEEK 537
              +++  P E          L      +     ++  ++ L          +   K+ +
Sbjct: 242 KFVEMWQIPEETFKSPHEQSVLTFVLRKLKYPPRFINTVMQLSAAPKTPTYDIVEFKDGR 301

Query: 538 LLSLRIIIKKLPFS-SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
           +  +     K+         +  DI+E K+ +  L H  +  +  ++  + F+ 
Sbjct: 302 IFEVYSHPSKMGEKIVGRVWSFRDITERKRVEKSLKHRVEFEQLITNLSTYFIG 355



 Score = 58.1 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 23/230 (10%), Positives = 61/230 (26%), Gaps = 7/230 (3%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNTWYG 145
                G     +  L + +G      +   + D+   ++I PN        ++  +   G
Sbjct: 571 QTTPQGRYLSANPALAQILGYATPADLIEGITDIKTQVYIKPNRRAEFIAEMQANSVVSG 630

Query: 146 -KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            ++ ++  +G    + I   A  +     +   + G   V             K+  +  
Sbjct: 631 FESQVYRQDGNI--IWISENARVVRDATGQIICYEG--TVEDITERKAASVALKQAKEAA 686

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
                 K    +    +              +  +       +   D          L +
Sbjct: 687 IAASRAKSTFLANMSHELRTPLNAIIGYSEILTEEAEDSGYRHIVPDLERICTAGRNLLT 746

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
             + + +        ++ Y +      L  +   + + L  RN  +L   
Sbjct: 747 LINDILDISKIEAGRMDLYLEDFSISALIESVISTAQPLVDRNSNTLEVE 796


>gi|117925683|ref|YP_866300.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117609439|gb|ABK44894.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1788

 Score =  357 bits (916), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 112/558 (20%), Positives = 219/558 (39%), Gaps = 35/558 (6%)

Query: 282  QYTKKQYFGTLQNNSKESFEYLSHRNHP-----SLSAYFDEGENLTPETVDKCPIPFFVY 336
                      +++    +   +                       T + +          
Sbjct: 624  MRRASPLVEGIEDLKGRTISVVQGVVDTYALAKRYPWVMWRNMATTEQALQALAQGEVTA 683

Query: 337  SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS-DRTCIA 395
                +     +   L    ++D +++       L        +  + V +     +    
Sbjct: 684  HLDTIPAVRVATERL----ALDSLQVVTPTDLQLQLSFGVRPDWPELVSIINKVMQAVPP 739

Query: 396  ASARLHTIQWNREN-------SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
            A  R+    W R               +                           ++++E
Sbjct: 740  AEKRVIVQSWMRPRTQTAMDWIYLWKVVGTLLLLAAVVLGVVLVWNRRLSQEIEQRKRVE 799

Query: 449  IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
             E+ +L   +E T   + I + EG +   N       G+  +++L +   +    +T   
Sbjct: 800  EELSKLYRAVEQTPVSVVITDLEGRVEYVNPTFCHNSGFAEDEVLGRTNGLIPSDHTSGA 859

Query: 509  MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEW 564
                L + ++     +     L  TK   L+  R+ I  +  +      Y     DIS+ 
Sbjct: 860  EYQALWQQITAGGEWSG--EFLNRTKSGGLVWERVSISAVRSADGQITHYLGIKEDISQM 917

Query: 565  KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
            K+++ +L+HAK+ A+  +  KS FLA +SHEIRTP+ AI+G   + +     P    +  
Sbjct: 918  KEDQERLAHAKESADLANRAKSSFLANMSHEIRTPINAIVGMCHLAQRMTVEP----KLR 973

Query: 625  EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
            +Y  +I  + + +L I+ND+LD+SKIE+GK++    P  LDE +S  + L  L A +K +
Sbjct: 974  DYLGHIQVAADTLLGIINDILDVSKIEAGKLHFEDIPFKLDELISRVMRLQGLKAQDKNV 1033

Query: 685  LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS--NEEVI--L 739
             +       +P+ ++ D   + QI  N+++NA+ FT  G ++++S       +  V    
Sbjct: 1034 ELVIDLEPQVPQTVVGDPLRISQILTNLVNNAVKFTEQG-EVVLSVKLQGVFDGRVTLYF 1092

Query: 740  RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
             VRD+G+GM + +L++   PF Q  +S   R  GTGLGL + + +V    G   + S  +
Sbjct: 1093 EVRDSGIGMEDAQLQRLFTPFQQGDDSMTRRYGGTGLGLSICQNLVKMMGGHLQVESRLS 1152

Query: 800  KGTL--IEIIFPLYDTSH 815
            +G+     +  P++    
Sbjct: 1153 EGSRFYFTVSLPIHQAPA 1170



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 13/139 (9%), Positives = 40/139 (28%), Gaps = 7/139 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN--HIGDLLKRQNTWYGK 146
            D  G ++ ++       G    +++G     +    H        +   +     W G+
Sbjct: 819 TDLEGRVEYVNPTFCHNSGFAEDEVLGRT-NGLIPSDHTSGAEYQALWQQITAGGEWSGE 877

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                  G  ++  + ++A  + S + + + + G  I        + +       +    
Sbjct: 878 FLNRTKSGGLVWERVSISA--VRSADGQITHYLG--IKEDISQMKEDQERLAHAKESADL 933

Query: 207 LHEIKKGHSSVEKEKYDIF 225
            +  K    +    +    
Sbjct: 934 ANRAKSSFLANMSHEIRTP 952


>gi|291568899|dbj|BAI91171.1| two-component hybrid sensor and regulator [Arthrospira platensis
           NIES-39]
          Length = 953

 Score =  357 bits (916), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 125/653 (19%), Positives = 247/653 (37%), Gaps = 34/653 (5%)

Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTE 245
              +  A  +  + K   +         V+  +              +  + + +  +  
Sbjct: 165 RVEERTAALRESEAKLEAMLNFAPAVIYVKDLQGRHIFVNRAFLKLFNCTLADIIGKVNH 224

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
            +   +     EK+  +  E     + E+   I+   YT   +   L + +++ +     
Sbjct: 225 DFYLPEVADVFEKHDRIVIESCHFHQFEEDVKIHDKNYTFLSHKFILFDQNQQPYALCGI 284

Query: 306 RNHPSLSAY----FDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDI 360
            N  +            +     T+   P   F + S G      PS            +
Sbjct: 285 SNDITQRQAFYNALQRSQEQLKATLQAIPDLVFRLNSQGEYLAIYPS--EYVGNLVDTKL 342

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
            I   +  LL  P  +  + +    L             +  +  + E    +   P   
Sbjct: 343 AIGYSIMELLPPPIAAKYSQVTQTALATKTLQTYEQDVVIDGVLRHEE----VRVAPCGD 398

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA---IINREG--IIL 475
                        E    + +     ++    +   I      G+    +++ +G    +
Sbjct: 399 NEVVFVIRDITEQETALRERQKAADTIKKSEDRFGRIANNMP-GVLYQYVLHPDGSHNFM 457

Query: 476 STNRAVSKLFGYPVEDILRK--PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
             +    ++FG   + I R         E      +   +    +     + E   +  +
Sbjct: 458 YMSERCQEIFGLDADTITRDANQLFQLFEAEDFISLKASILLSATTLNTWSWEGKLVTPS 517

Query: 534 KEEKLLS-LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
            E K +  +    +++     +   + DISE K  + +L       ++ +  K +FLA +
Sbjct: 518 GENKWIQGISQPERQVNGDIVWDGVVVDISERKLMEIELQKTVAELDRATRLKDEFLANM 577

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHE+RTPL  I+G SE +K    G L N         I++SG  +L++++D+LDISKIE+
Sbjct: 578 SHELRTPLNGILGMSEALKEGILGAL-NSNQHHAIAMIEKSGKHLLELISDILDISKIEA 636

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR--ILADLRSVKQIALN 710
           GK+ L+   V + E  + +++LV   A  K+I I  +    + +  I  D R ++Q+ +N
Sbjct: 637 GKLELYLTEVRVQELCTSSLTLVNHLAFTKQINIEINIPQALEKTLIKVDNRRLRQVLIN 696

Query: 711 ILSNAIHFTPSGGQIIIST--------THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
           +LSNA+ FT   G+I ++           ++ + +   V D G+G+   +L K   PF Q
Sbjct: 697 LLSNALKFTHKSGKINLNVGIKTSPNAAISTPQSIYFSVIDNGIGIAPDDLNKLFLPFTQ 756

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
           I +S   +  GTGLGL L K +++ + G   + S   KG+   +  P + TS+
Sbjct: 757 IDSSLNRQYSGTGLGLALVKQIIELHGGCVEVSSQLGKGSCFTVYLPYHKTSN 809



 Score = 74.7 bits (182), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 66/202 (32%), Gaps = 3/202 (1%)

Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR--KME 448
            T         T Q      L+++      A +            + ++ R+ +R   + 
Sbjct: 115 GTFAVYFKTCRTPQNQDLEILSLSAHIASIAIERDRTTQALADLNQQLEVRVEERTAALR 174

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
               +L ++L      I + + +G  +  NRA  KLF   + DI+ K    F       V
Sbjct: 175 ESEAKLEAMLNFAPAVIYVKDLQGRHIFVNRAFLKLFNCTLADIIGKVNHDFYLPEVADV 234

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL-RIIIKKLPFSSCYSLTMHDISEWKQE 567
              +   ++        E+      K    LS   I+  +           +DI++ +  
Sbjct: 235 FEKHDRIVIESCHFHQFEEDVKIHDKNYTFLSHKFILFDQNQQPYALCGISNDITQRQAF 294

Query: 568 KNKLSHAKKIAEKESSHKSDFL 589
            N L  +++  +       D +
Sbjct: 295 YNALQRSQEQLKATLQAIPDLV 316



 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/384 (9%), Positives = 109/384 (28%), Gaps = 34/384 (8%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D  G    ++    K        +IG     V+   ++     + D+ ++ +    ++  
Sbjct: 195 DLQGRHIFVNRAFLKLFNCTLADIIGK----VNHDFYL---PEVADVFEKHDRIVIESCH 247

Query: 150 WPIEGTNLYV-----PIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
           +     ++ +             ++ +N++   +   GI +            +R  ++ 
Sbjct: 248 FHQFEEDVKIHDKNYTFLSHKFILFDQNQQP--YALCGISNDITQRQAFYNALQRSQEQL 305

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL---TEYYAHKDDVLKTEKYPL 261
               +           + +  +         + +   ++              K  +   
Sbjct: 306 KATLQAIPDLVFRLNSQGEYLAIYPSEYVGNLVDTKLAIGYSIMELLPPPIAAKYSQVTQ 365

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE------SFEYLSHRNHPSLSAYF 315
                 +L   E    I+     ++       +N         + +  + R     +   
Sbjct: 366 TALATKTLQTYEQDVVIDGVLRHEEVRVAPCGDNEVVFVIRDITEQETALRERQKAADTI 425

Query: 316 DEGENLTPETVDKCPIPFFVY-----SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
            + E+      +  P   + Y        N  Y +     +    +      A  L  L 
Sbjct: 426 KKSEDRFGRIANNMPGVLYQYVLHPDGSHNFMYMSERCQEIFGLDADTITRDANQLFQLF 485

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
           +A       A   ++L  +     +   +L  +  + EN         +   Q   ++  
Sbjct: 486 EAEDFISLKAS--ILLSATTLNTWSWEGKL--VTPSGENKWIQGIS--QPERQVNGDIVW 539

Query: 431 NGIEPEDVDTRINKRKMEIEVMQL 454
           +G+  +  + ++ + +++  V +L
Sbjct: 540 DGVVVDISERKLMEIELQKTVAEL 563


>gi|189423659|ref|YP_001950836.1| multi-sensor signal transduction histidine kinase [Geobacter
           lovleyi SZ]
 gi|189419918|gb|ACD94316.1| multi-sensor signal transduction histidine kinase [Geobacter
           lovleyi SZ]
          Length = 581

 Score =  357 bits (916), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 104/560 (18%), Positives = 204/560 (36%), Gaps = 30/560 (5%)

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
           + +   LL  ++ +LP Q   H +       K     +  + +   +     +       
Sbjct: 45  QAQLARLLAEQQRALPPQALAHKLGAAI---KARVTLIAADGRVVGDSDVRDDQVGSLEN 101

Query: 315 FDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIE---IAGGLSTLLD 371
                 +                         +  L     SV  +         +    
Sbjct: 102 HQGRPEVQQALKTGSGWSIRYSDTLRTTMLYVALPLPAGDASVIRLALPLEYFDAAKRAL 161

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
              L     +               +A+      +    + +       A    E +   
Sbjct: 162 HNLLGGAVTLLLFSSLLLSIFLSRITAKPLREIADAAARIGVGERGVRIAMGKGEEIDYL 221

Query: 432 GIEPEDVDTRINKR--KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
                ++  RI ++  K+  E  +L +IL    +G+ + + +G I+  N A  K FG P 
Sbjct: 222 ARVLNEMAARIEEQMHKLTSEQQRLAAILRGMGEGVMVTDTKGNIILVNPAFRKQFGLPG 281

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
            ++  +P            +     E         +            L++  + + +  
Sbjct: 282 -EVEGRPLVEVCRHPD---LLQAFEEQRESGDE--VSCEITIPITNLVLMAHWVPLTRDS 335

Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
            +       HDIS+ K+ +                + DF+A VSHE+RTP+  I G+ E 
Sbjct: 336 GNRGTVAVFHDISDLKRVET--------------MRRDFVANVSHELRTPVAVIKGYGET 381

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           + +         R   +   I      + +++ND+L +SK+E+    L   P+ L   + 
Sbjct: 382 LLDGAL-EESPERSRRFVEIIVSHAERLTNLINDILTLSKLEARDAALTLHPLDLCGTIR 440

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
           +A  L++ +A  K I I     + +P++LAD   ++Q+ LN+L NAI +TP GG + ++ 
Sbjct: 441 KAQMLMEDHARSKGIRIAAECPDGMPKVLADQGQLEQVLLNLLDNAIKYTPDGGDVTVAA 500

Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
                  V++ V DTG+G+   +L +  + F ++   +     GTGLGL + K +V  + 
Sbjct: 501 RLEQE-RVVVAVSDTGIGIPARDLPRIFERFYRVDEGRSREQGGTGLGLAIVKHIVQLHG 559

Query: 790 GKFYIFSTPAKGTLIEIIFP 809
           G+  + S   KG+   +  P
Sbjct: 560 GEVQVASEAGKGSTFTVTLP 579



 Score = 38.1 bits (87), Expect = 5.6,   Method: Composition-based stats.
 Identities = 32/327 (9%), Positives = 73/327 (22%), Gaps = 21/327 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            D  G +  ++    K  G    ++ G  L +V     +       +  +  +    + T
Sbjct: 260 TDTKGNIILVNPAFRKQFGLP-GEVEGRPLVEVCRHPDLLQ--AFEEQRESGDEVSCEIT 316

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRG-FGIVHVNRVDNDPRALGKRLDKKFSHL 207
           +       +   +     P+   +      RG   + H          + +      SH 
Sbjct: 317 IPITNLVLMAHWV-----PLTRDSGN----RGTVAVFHDISDLKRVETMRRDFVANVSHE 367

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
                       E     + +  P   R   +   +   +A +   L  +   L   E  
Sbjct: 368 LRTPVAVIKGYGETLLDGALEESPERSR---RFVEIIVSHAERLTNLINDILTLSKLEAR 424

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
                     +       +        +             P + A   + E +    +D
Sbjct: 425 DAALTLHPLDLCGTIRKAQMLMEDHARSKGIRIAAECPDGMPKVLADQGQLEQVLLNLLD 484

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
                      G                +V D     G+              +      
Sbjct: 485 N---AIKYTPDGGDVTVAARLEQERVVVAVSDTG--IGIPARDLPRIFERFYRVDEGRSR 539

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMT 414
               T +  +   H +Q +       +
Sbjct: 540 EQGGTGLGLAIVKHIVQLHGGEVQVAS 566


>gi|260221054|emb|CBA29236.1| hypothetical protein Csp_A11130 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 1191

 Score =  357 bits (916), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 116/565 (20%), Positives = 220/565 (38%), Gaps = 42/565 (7%)

Query: 276 HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD----EGENLTPETVDKCPI 331
            + +   Y        L++ S +   Y++ R   +     +      E       +  P 
Sbjct: 230 RSKSGQLYWVDATIVPLKDESGKPNMYIAIRTDITARKRMEVNIKAAEARLRHITNTLPG 289

Query: 332 PFF----VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS--DNNAIKPVM 385
             F            + N     +        ++     S  +         +       
Sbjct: 290 VVFQVHVSERGQRYTFVNDRVQEVRGISVQQLLDDPKSASRQVLEEDWPLVRDGIYLAAQ 349

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
              + +          TI+W     +     P  +  Q    +   GI  +    +    
Sbjct: 350 RREAWQGEYRIQLPNKTIRW-----IRTEVSPEPETGQDGATI-FTGIWQDVTLAKEA-- 401

Query: 446 KMEIEVMQLCSILEATSDGIA--IINREG--IILSTNRAVSKLFGYPVEDILRKP--FTV 499
                  +L  +       +    + + G   I   + A   + G   E +      F  
Sbjct: 402 -----DERLREVTRHIPVAVFQYFVTKGGLFKIAFMSHAAETMMGVRTEVMTTDSNAFLQ 456

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL--- 556
            +     + +   L E  +      ++   +   +  ++  +R   +    ++ + +   
Sbjct: 457 CVHPQDRTSVAQSLVEASAAGAPWGMDFRMVN-AQTMEIFWVRGESQPQHKANGHIVWNG 515

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            + D+++ +    +L  AK  AE  +  KSDFLA +SHEIRTP+  +IG +E++ +    
Sbjct: 516 FLTDVTQARHISEELQKAKDAAEAANHAKSDFLANMSHEIRTPMNGVIGMTELLLDTTL- 574

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
              +    EY N +  S   +L ++ND+LD SKIE+GKM++   P +L+  V++ +  V 
Sbjct: 575 ---DAEQQEYLNIVKSSSEALLRVINDILDFSKIEAGKMDIESIPFNLERTVADTLKTVV 631

Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI-IISTTHTSN 734
           L A++K + +    A ++PR ++ D   ++Q+ +NIL NAI FT  G  +  I     SN
Sbjct: 632 LRAHDKGLEVVWDVAPDVPRALVGDPGRLRQVLVNILGNAIKFTERGEVVLRIRQEVASN 691

Query: 735 EE--VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
            +  + L V DTG+G+   +L      F Q  +S   +  GTGLGL +   +V+   G  
Sbjct: 692 GKPLLHLAVSDTGIGIPANKLGSIFDAFSQEDSSTTRKYGGTGLGLTICARLVEGMGGTI 751

Query: 793 YIFSTPAKGTLIEIIFPLY-DTSHP 816
           ++ STP +G++      L  DTS P
Sbjct: 752 WVESTPGQGSVFHFTVALVKDTSAP 776



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 38/418 (9%), Positives = 109/418 (26%), Gaps = 26/418 (6%)

Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255
           + + L      +        +++     +   +          ++ S +   +  D    
Sbjct: 24  VQQELGGLQEGVPLSPAALQAIKGLGPLLHQVEEAYLQNDRDLELKSRSLELSSVDLTAS 83

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
             +        +   +        L       +   + ++ +   E +         +  
Sbjct: 84  NTRLRDELESRTRAMDSLRATASALMAQVDPDHPPLIDDSLESLSELMGTLVRQKEDSQK 143

Query: 316 DEGENLTPET-----VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
           D    LT        +D+  I     + G++ YAN  F  L+ Y   + +      +  +
Sbjct: 144 DLQFALTDLANQKFALDQHAIVSTTNAAGDIVYANDKFCQLSGYSRGELLGQ----NHRM 199

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
               + D      +    S            +          +        ++  +    
Sbjct: 200 INSGVQDKVYFTNLWAVISSGKVWRGEICNRSKS---GQLYWVDATIVPLKDESGKPNMY 256

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI--AIINREG-IILSTNRAVSKLFGY 487
             I  +    +  +  ++    +L  I       +    ++  G      N  V ++ G 
Sbjct: 257 IAIRTDITARKRMEVNIKAAEARLRHITNTLPGVVFQVHVSERGQRYTFVNDRVQEVRGI 316

Query: 488 PVEDILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
            V+ +L   K  +  + +    ++   +            E       K  + +   +  
Sbjct: 317 SVQQLLDDPKSASRQVLEEDWPLVRDGIYLAAQRREAWQGEYRIQLPNKTIRWIRTEVSP 376

Query: 546 KKLPFSSC---YSLTMHDISEWKQEKNKLSHAKKIAEKESSH----KSDF--LARVSH 594
           +          ++    D++  K+   +L    +            K     +A +SH
Sbjct: 377 EPETGQDGATIFTGIWQDVTLAKEADERLREVTRHIPVAVFQYFVTKGGLFKIAFMSH 434



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 35/377 (9%), Positives = 95/377 (25%), Gaps = 22/377 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGKT 147
            +A G +   +++  +  G    +++G     ++  +       ++  ++     W G+ 
Sbjct: 168 TNAAGDIVYANDKFCQLSGYSRGELLGQNHRMINSGVQDKVYFTNLWAVISSGKVWRGEI 227

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                 G      +D   +P+   + + + +    I              K  + +  H+
Sbjct: 228 CNRSKSGQLY--WVDATIVPLKDESGKPNMY--IAIRTDITARKRMEVNIKAAEARLRHI 283

Query: 208 HEIKKGHSS---VEKEKYDIFSQQSPPPHLRMKNKVSSLTEY------YAHKDDVLKTEK 258
                G      V +              +R  +    L +          +D  L  + 
Sbjct: 284 TNTLPGVVFQVHVSERGQRYTFVNDRVQEVRGISVQQLLDDPKSASRQVLEEDWPLVRDG 343

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
             L      +   +      N      +      +  + +    +       ++   +  
Sbjct: 344 IYLAAQRREAWQGEYRIQLPNKTIRWIRTEVSP-EPETGQDGATIFTGIWQDVTLAKEAD 402

Query: 319 ENLTPETVDKCPIPF---FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
           E    E     P+     FV   G    A  S    T      ++      + L      
Sbjct: 403 ER-LREVTRHIPVAVFQYFVTKGGLFKIAFMSHAAETMMGVRTEVMTTDSNAFLQCVHPQ 461

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
              +  + ++   +         R+   Q        +      +       +  NG   
Sbjct: 462 DRTSVAQSLVEASAAGAPWGMDFRMVNAQTM--EIFWVRGESQPQHKANGHIV-WNGFLT 518

Query: 436 EDVDTRINKRKMEIEVM 452
           +    R    +++    
Sbjct: 519 DVTQARHISEELQKAKD 535


>gi|319406908|emb|CBI80543.1| two-component sensor histidine kinase [Bartonella sp. 1-1C]
          Length = 769

 Score =  357 bits (916), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 125/506 (24%), Positives = 225/506 (44%), Gaps = 53/506 (10%)

Query: 342 FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401
            Y + +   +  Y+  + +     ++ ++D    +     + +M      +         
Sbjct: 281 VYWSRAMYEMLGYEPQNALLSISQITAIIDPKDANFFELAQELM-----GSEKKHIDINV 335

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
            ++    + + M         + P      GI  +  +      +     +++   +E  
Sbjct: 336 PMRHAEGHYVWMRIRAEVTDEEEP---HLVGISFDISEQHQFAEQTARADLRIRDAIENI 392

Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
           S+   + + EG ++ +N    +    P + +        +E  +   ++ Y  +I     
Sbjct: 393 SESFVLWDSEGRLVMSNSKFCEYASIPKQMLQSGIERATVEAMSRPAISEYPLKIDESG- 451

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK----------- 570
                  ++  T +   L +    ++            DISE KQ++ K           
Sbjct: 452 ----NLTSIRQTADGYWLKIN---ERRTQDGGLVCIGTDISELKQQQEKFEDSERRLFSF 504

Query: 571 ------------------------LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
                                   L   K+ AE  +  KS+FLA +SHE+RTPL AI+GF
Sbjct: 505 IQELKRARGNAQQRATEVEKLNKSLQEEKERAESANKAKSEFLANISHELRTPLNAILGF 564

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
           SE++    FGPLG+ RY EY + I  SG  +L ++ND+LD+SKIE+G+  L  + ++L+ 
Sbjct: 565 SEIMLQSTFGPLGSQRYKEYMHDIHNSGTHLLTLINDILDMSKIEAGRFTLDRKNINLEP 624

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726
            +SE I  +   A  K+I + T+    +     D R++KQI LN++SNA+ FTPSGG I 
Sbjct: 625 IISETIRTLTPQAQAKKISLTTNIEQKL-HADVDCRAMKQIFLNLISNAVKFTPSGGSID 683

Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
           I      N  +I  ++DTGVG+    ++K  +PF Q+ N       G+GLGL +++++++
Sbjct: 684 IR-AFQKNNNLIFSIKDTGVGIPQEAIKKLGQPFEQVENQFTKTHPGSGLGLAISRSLLE 742

Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLYD 812
            + GK  I S  AKGT++ II P+  
Sbjct: 743 LHKGKLEITSKEAKGTIVTIIMPIQQ 768


>gi|284167215|ref|YP_003405493.1| PAS/PAC sensor signal transduction histidine kinase [Haloterrigena
           turkmenica DSM 5511]
 gi|284016870|gb|ADB62820.1| PAS/PAC sensor signal transduction histidine kinase [Haloterrigena
           turkmenica DSM 5511]
          Length = 817

 Score =  357 bits (916), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 104/764 (13%), Positives = 230/764 (30%), Gaps = 44/764 (5%)

Query: 65  TNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI 124
           T+  +    F       T      +D  G +   +E   +  G    +++G  +      
Sbjct: 77  TDEREDGTEFEAFVSAVTDYAIITLDPDGTVASWNEGANRITGYETDEIVGEHVSAFYTD 136

Query: 125 LHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIV 184
             I       +L   +     +   W +         ++    +   +    GF    + 
Sbjct: 137 AAIADGAPERNLDIAREDGRVEDEGWRVRADGSRFWANVTITAVRDEDGTLQGFTT--VT 194

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ---------SPPPHLR 235
                        +R       + E       +     D+              P     
Sbjct: 195 RDMTERRAYEQQLQRERDFTEQILETVPVGIGLLTPSGDVVRANQRLADQFGIEPAASEP 254

Query: 236 MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN 295
                  L +         +     +  +       Q       + +         L++ 
Sbjct: 255 SSIDAWDLYDVDGEPIPADERPWRRVFETGHPIDDYQCQVDVPEVGRRWLSITAVPLEHA 314

Query: 296 SKESFEYLSHRNHPSLSAYFDEGENL----TPETVDKCPIPFFVYSHGN-LFYANPSFLL 350
             +    +   +  +     +         T + +   P+   V +       AN     
Sbjct: 315 EDDELRIVLAVDDITEQKEQERDLRREYEQTEKLLRTAPVGIAVQNADRETILANRRAQE 374

Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
                  +  +               +    +     R  +T           +      
Sbjct: 375 TFGLTESEFTDNPVDTGEWKIYDADGELLGPEETTSGRVLQTGEPIFDEELIFEPPDGER 434

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS----ILEATSDGIA 466
           L              E         +  + +  +R++E    +L +    IL+  SD   
Sbjct: 435 LHFRVNTAPVFGPDGEIERIITGSKDITELKERERQLEQRKSELETELSEILDRISDAFY 494

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
            ++ E      N   ++L G P   IL +     +   T           L      T E
Sbjct: 495 ALDDEFRFTHLNDHAAELVGRPKAQILDQKVWDVVPDGTEDRHREAFERALETQEPVTFE 554

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
              +    ++               +  S+   D+SE K+        ++  E+ +    
Sbjct: 555 ---IYVEDDDAWFEFNAYPS----ETGLSVYFRDVSERKE-------YQRKLEESNERLE 600

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
            F    SH+++ PL  +  + + +   R+    +    E+  +       +  +++ LL+
Sbjct: 601 QFAYAASHDLQEPLRMVTSYLQ-LLESRYADELDGDAAEFIEFAVDGAERMRKMIDGLLE 659

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706
            S++E+    L  EP+ L E V +AI  +Q+   E    I      ++P++  D   ++Q
Sbjct: 660 YSRVETQGEPL--EPIDLGEIVDDAIGNLQVKIEETGADITLD---SLPQVRGDESQLQQ 714

Query: 707 IALNILSNAIHFT-PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           +  N+LSNA+ ++     ++ IS          + VRD G+G+   + ++  + F ++  
Sbjct: 715 VFQNLLSNALEYSGDEPPRVRISADRR-GSRWKISVRDEGIGIEPEDQDQIFEVFQRLHG 773

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             +    GTG+GL L + +V+ + G+  + S P +GT      P
Sbjct: 774 --REEHPGTGIGLSLCQRIVERHDGEISVDSEPGEGTTFSFTLP 815


>gi|218441345|ref|YP_002379674.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7424]
 gi|218174073|gb|ACK72806.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7424]
          Length = 1267

 Score =  357 bits (916), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 113/788 (14%), Positives = 258/788 (32%), Gaps = 77/788 (9%)

Query: 71   ENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCD-VSDILHIDP 129
            E               + +D+H   +  +    +  G    ++ G  L + + D L+   
Sbjct: 507  EEELRLIADATPALIAY-VDSHQRYRFNNRRYEEWFGVPIDQISGKTLQEFLGDSLYEKV 565

Query: 130  NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRV 189
               I  +LK +   Y +    P   +     I    +P +    +  GF    +++    
Sbjct: 566  RPRIEKVLKGEQVIYEEEITLPNSESRY---IRANYMPRFDSQGKVEGF--VALINDFSD 620

Query: 190  DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEY 246
                    +  +++F  +         +  E                  ++ ++      
Sbjct: 621  RKRMEDNLRESEERFRMMANSSPVMIWLTDETAGCIFVNQTWLNLTGRTLEQELGEGWTD 680

Query: 247  YAHKDDVLKTEKYPLLT-SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
              H +D+    +  L   +       Q    + N +     +          +   Y+  
Sbjct: 681  NIHPEDLSYVLEDYLQAFNTRQPYEMQYRVKSANGDYRWILERGSPRFTPEGKFSGYIGS 740

Query: 306  RNHPSLSAYF-------DEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSV 357
                +            ++      + +D       +   +  + Y N     L  +   
Sbjct: 741  CTDVTERQQAIQALQQSEQALQQHAQMLDLANDSIIIRDLNEAIAYWNHGAERLYGWTKT 800

Query: 358  DDIEIAGG--LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
            +         L T+   PK    + +                    T      + + ++ 
Sbjct: 801  EAEGHQIHNLLKTIFPQPKTEIYSILT--RQGYWQGEL--------TQTKQDGSQIIVSS 850

Query: 416  IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
                + N   + +    I  +  + +  +  + +   +  +I E  + G++++N +G  L
Sbjct: 851  RWTLQYNSQGQAIAILEISDDITERKQVEAALRVSEERFRAIFEQAAVGMSLLNLDGRWL 910

Query: 476  STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
              N+ + ++ GY  E++L+K F             +Y++++L+    +T         ++
Sbjct: 911  RVNQKLCEITGYTQEELLQKTFQDITYPEDLETDLNYVSKLLA-GEIETYSLEKRYIRQD 969

Query: 536  EKLLSLRIIIKKLPFS------------SCYSLTMHDISEWKQEKNKLSHAK-------- 575
            + L+ + I +  +                 +   + DISE K+ + +   A+        
Sbjct: 970  KSLIWVEITVSLMWDQTQSKSSSKVPKPQYFITVIEDISEAKRGEIERQQAQIALQERAK 1029

Query: 576  -------------KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
                          + +K +     F   VSH+++ PL AI   SE I+    G L    
Sbjct: 1030 ELTSLNTVLASTTTMLQKRNQELDQFAYVVSHDLKAPLRAIANLSEWIEEDLEGQLPPEN 1089

Query: 623  YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
              E    + +  + + +++N +L+ S++  G+     E  S+DE ++E I  +       
Sbjct: 1090 Q-EQLQLLRQRVHRMENLINGVLEYSRV--GRKETKIETFSVDELLTEVIDSLSPPP--- 1143

Query: 683  RILIRTSFANNIPRILADLRSVKQIALNILSNAI-HFTPSGGQIIISTTHTSNEEVILRV 741
                       +P +      + QI  N++SN I H+  S G + I      ++     V
Sbjct: 1144 --TFTVEIGEGMPTLTTSKVFLAQIFSNLISNGINHYPGSDGHLWIRVK-ELDKFYEFAV 1200

Query: 742  RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
             D G G+     ++    F  +  S     E TG+GL + K +++   G   + S   +G
Sbjct: 1201 ADNGKGIAPEYHQRIFGIFQTLEKS--ENLESTGIGLAIVKKIIEYQGGNIKVESELGQG 1258

Query: 802  TLIEIIFP 809
            T     +P
Sbjct: 1259 TTFRFTWP 1266



 Score =  134 bits (336), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 59/525 (11%), Positives = 137/525 (26%), Gaps = 48/525 (9%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK 146
           + +D       I+             + G  +  +   +           +K Q     +
Sbjct: 148 FALDYQWNFTYINNPGEIIFKQSRQTLEGKNIWQILPEIEGTVYEQFHRAIKEQIPICLE 207

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI-VHVNRVDNDPRALGKRLDKKFS 205
             ++           ++ A P+           G  + +             K  + +F 
Sbjct: 208 QNIFTESNQFY----EIRAYPVSE---------GLAVYLLDVTERRLAALQLKESELRFR 254

Query: 206 HLHEIKKGHSSVEK----------EKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255
            L E       +              Y+    +S     +  +    L   +    + + 
Sbjct: 255 QLAENISKVFWISDLEKSEILYVSPAYERIWGKSCESLYQYPSSW--LEAVHPEDRNRVN 312

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN----SKESFEYLSHRNHPSL 311
                +  + E    E       +            + +      + +            
Sbjct: 313 LAISQMK-NGEQDFKEDYRIIRPDGQIRWIGARTFPIYDENGKRYRIAGFAEDITERKRA 371

Query: 312 SAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
                E E      V+       F    G L YAN  +L +  Y   D        + + 
Sbjct: 372 EQALQESERRFRRLVESNLFGVAFANIAGRLHYANDYYLNMVGYSREDLENGLIQWNQMT 431

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
               L  +      M  +              ++ +      +    F            
Sbjct: 432 PPEWLDLDFKALEEMKVK--GVTTPFEKEY--LRKDGSRVPILIGAAFLDEPYEI-AQEM 486

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490
            G   +    +  ++ ++    +L  I +AT   IA ++        NR   + FG P++
Sbjct: 487 IGFFLDLTRLKETEKALQQREEELRLIADATPALIAYVDSHQRYRFNNRRYEEWFGVPID 546

Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
            I  K    FL  +    +   + ++L    +   E+       E + +    + +    
Sbjct: 547 QISGKTLQEFLGDSLYEKVRPRIEKVLK-GEQVIYEEEITLPNSESRYIRANYMPRFDSQ 605

Query: 551 S--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
                +   ++D S+ K+ ++ L        +ES  +   +A  S
Sbjct: 606 GKVEGFVALINDFSDRKRMEDNL--------RESEERFRMMANSS 642



 Score =  117 bits (293), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 35/302 (11%), Positives = 88/302 (29%), Gaps = 16/302 (5%)

Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG--NLFYANPSFLLLTKYKSVDD 359
            L        +    E E    +  +     F++       + Y +P++  +   KS + 
Sbjct: 233 LLDVTERRLAALQLKESELRFRQLAENISKVFWISDLEKSEILYVSPAYERIWG-KSCES 291

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
           +                ++     + + +              I+ +      +    F 
Sbjct: 292 LYQYPSS---WLEAVHPEDRNRVNLAISQMKNGEQDFKEDYRIIRPDG-QIRWIGARTFP 347

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
             ++  +     G   +  + +  ++ ++    +   ++E+   G+A  N  G +   N 
Sbjct: 348 IYDENGKRYRIAGFAEDITERKRAEQALQESERRFRRLVESNLFGVAFANIAGRLHYAND 407

Query: 480 AVSKLFGYPVEDILRKPFTV--FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
               + GY  ED+                 +    L E+    +    EK  L   K+  
Sbjct: 408 YYLNMVGYSREDLENGLIQWNQMTPPEWLDLDFKALEEMKVKGVTTPFEKEYL--RKDGS 465

Query: 538 LLSLRIIIK----KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV- 592
            + + I           +        D++  K+ +  L   ++     +      +A V 
Sbjct: 466 RVPILIGAAFLDEPYEIAQEMIGFFLDLTRLKETEKALQQREEELRLIADATPALIAYVD 525

Query: 593 SH 594
           SH
Sbjct: 526 SH 527



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/187 (12%), Positives = 60/187 (32%), Gaps = 9/187 (4%)

Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK--MEIEVMQLCS 456
               I       L +  +     +   E + Q   + E     + +++  +E    Q+  
Sbjct: 79  ETWDISTADAFRLMIFILECILISILCEALHQAKRKVEINLHSLQQKESMLEKANTQVSR 138

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           ILE+  +G   ++ +      N     +F    + +  K     L       +       
Sbjct: 139 ILESIGEGFFALDYQWNFTYINNPGEIIFKQSRQTLEGKNIWQIL-PEIEGTVYEQFHRA 197

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKK 576
           +   +   LE+     + +         I+  P S   ++ + D++E +    +L  ++ 
Sbjct: 198 IKEQIPICLEQNIFTESNQ------FYEIRAYPVSEGLAVYLLDVTERRLAALQLKESEL 251

Query: 577 IAEKESS 583
              + + 
Sbjct: 252 RFRQLAE 258


>gi|253573897|ref|ZP_04851239.1| PAS sensor protein [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251846374|gb|EES74380.1| PAS sensor protein [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 611

 Score =  357 bits (916), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 83/396 (20%), Positives = 167/396 (42%), Gaps = 26/396 (6%)

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
           +P    ++  +           +   + +   E E  +L SIL   SDG+   +  G ++
Sbjct: 231 MPVLGNDEIGQLSKAFNYMTSRLRDALAQN--EEEKEKLASILTNMSDGVIATDETGRVI 288

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
             NR  S++ G    D+ +      +             ++L      +      G   +
Sbjct: 289 LMNRRASEMLGTSDTDLDQADIMSLMNLPDEE------WDVLEQGTMHSTILENTGPDGD 342

Query: 536 EKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
             L+ +                  + D++E ++ +              + + +F+A VS
Sbjct: 343 VFLIRVTFTPIHRREIGIIGTIAVLQDVTEQEKLE--------------ASRREFVANVS 388

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HE+RTPLT I  ++E +++             + + I      ++ +V DLL +S+ +S 
Sbjct: 389 HELRTPLTTIKSYTEALEDGAM--EDPELGPRFVSVIQSQTERMIRLVTDLLHLSRFDSH 446

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713
           +  L  +P ++ E + + +        EK I      AN++     D   + Q+  N++S
Sbjct: 447 EAELRKQPTNVMEMLEDVVDRFSFQMQEKEIKPTLFIANDVDTAWIDRDQIDQVLDNLIS 506

Query: 714 NAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
           NA+ +TP GG I +    T + ++ + V+DTG+G+   +L++  + F ++  ++     G
Sbjct: 507 NAMKYTPEGGAIALEARLTEDRQLAISVQDTGIGIPKKDLDRIFERFYRVDKARSRNMGG 566

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           TGLGL +A+ +V A+ G   + S   KGT +    P
Sbjct: 567 TGLGLSIAREIVRAHGGTISLQSELGKGTKVTFTLP 602



 Score = 44.2 bits (103), Expect = 0.078,   Method: Composition-based stats.
 Identities = 26/254 (10%), Positives = 58/254 (22%), Gaps = 9/254 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            D  G +  ++    + +G     +      D+  ++++   +   D+L++         
Sbjct: 281 TDETGRVILMNRRASEMLGTSDTDL---DQADIMSLMNL--PDEEWDVLEQGTMHSTILE 335

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +G    + +     PI+ R     G     ++          A  +      SH  
Sbjct: 336 NTGPDGDVFLIRVTF--TPIHRREIGIIGT--IAVLQDVTEQEKLEASRREFVANVSHEL 391

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
                      E  +  + + P    R  + + S TE        L           E  
Sbjct: 392 RTPLTTIKSYTEALEDGAMEDPELGPRFVSVIQSQTERMIRLVTDLLHLSRFDSHEAELR 451

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
                    +              +                         +NL    +  
Sbjct: 452 KQPTNVMEMLEDVVDRFSFQMQEKEIKPTLFIANDVDTAWIDRDQIDQVLDNLISNAMKY 511

Query: 329 CPIPFFVYSHGNLF 342
            P    +     L 
Sbjct: 512 TPEGGAIALEARLT 525


>gi|332704442|ref|ZP_08424530.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332554591|gb|EGJ51635.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 836

 Score =  357 bits (916), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 114/634 (17%), Positives = 233/634 (36%), Gaps = 41/634 (6%)

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
           I +    +  +       +     L+       +           + +      +    +
Sbjct: 73  ISRYGREIIGQPLRYVQGRPRAGGLQT----WRMLHTDGVTPVRAEDQPLARSIARGELV 128

Query: 270 PEQE-DFHTINLNQYTKKQYFGTLQNNSKESF----EYLSHRNHPSLSAYFDEGENLTPE 324
            E+E      +  +       G ++  S         +++      L     E E     
Sbjct: 129 AEEEYVILRPDGGKVPIACNSGPIRAESGSITGGVLSWINVAKSQKLLEDLRESEARFKA 188

Query: 325 TVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
           T D+  +     S       AN  +  +  Y   D++        +L  P+  D   +  
Sbjct: 189 TFDQAAVGMAQTSPDNRFLRANAKYCQMLGYT-FDELARISLDDIVL--PEDRDKERLLV 245

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
             L   D + I+   R         + +              E       + +    +  
Sbjct: 246 GQLLAGDISSISLEWRCLR---KDGSIIWTEVTSSLVRKYSGEPDYIIHAKLDISVRKKA 302

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV-FLE 502
           + ++   V +  ++ E + D I  +NR    L  N A     G+P  + + K        
Sbjct: 303 EEELFKSVQEYKALAENSPDLIIRVNRGLRYLYVNPAFEAFSGHPASECMGKSIREACYL 362

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII--KKLPFSSCYSLTMHD 560
                 +   +  + S    ++L+       +E +     +++   +        +   D
Sbjct: 363 PEITEKIEEVVARVFSTRQAESLDFALRKPAEEARHFQASVVLESGQEGLEESALVLSRD 422

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I+E K+ + +   A + AE+ +  KS+FLA +SHEIRTP+  ++G    + +       +
Sbjct: 423 ITELKRLEAESKQAMEAAEQANRAKSEFLANMSHEIRTPMNGVMG----MLDLALMNNPD 478

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
           P    Y     +S   +L+IVND+LD+++IE+G++ +      +  +       + L A 
Sbjct: 479 PSVRSYLQMGKKSAGHLLNIVNDILDLARIEAGRIEIGTREFDVRMSFEALFRTMALEAE 538

Query: 681 EKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
           +K +      A++IP R++ D   + Q+  N++ NAI FT  G +I +  T     ++ +
Sbjct: 539 KKGLRFSAVIASDIPSRLIGDEGRLIQVFTNLIGNAIKFTTKG-EITVKVTVARPTDIGM 597

Query: 740 --------------RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
                          + DTG+G+   +LEK  + F Q+     ++  GTGLGLP+++ +V
Sbjct: 598 QEACPHTDAICMFASISDTGIGIPADQLEKIFESFAQVRGDLHLQHFGTGLGLPISRQLV 657

Query: 786 DANMGKFYIFSTPAKGTLIEIIFPLYDT--SHPH 817
           +   GK +  S   KG+       L +   + P 
Sbjct: 658 ELMDGKIWSESELGKGSTFYFTVTLQEAPNAQPE 691



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/253 (6%), Positives = 54/253 (21%), Gaps = 13/253 (5%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN--TWYG 145
                      + +  + +G    ++  + L D+      D    +   L   +  +   
Sbjct: 199 QTSPDNRFLRANAKYCQMLGYTFDELARISLDDIVLPEDRDKERLLVGQLLAGDISSISL 258

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +      +G+ ++  +  + +  YS   ++             V         +  +++ 
Sbjct: 259 EWRCLRKDGSIIWTEVTSSLVRKYSGEPDYIIHAKL----DISVRKKAEEELFKSVQEYK 314

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPP------PHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
            L E                            P      K      Y     + ++    
Sbjct: 315 ALAENSPDLIIRVNRGLRYLYVNPAFEAFSGHPASECMGKSIREACYLPEITEKIEEVVA 374

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
            + ++ + +                 +                L      +     +   
Sbjct: 375 RVFSTRQ-AESLDFALRKPAEEARHFQASVVLESGQEGLEESALVLSRDITELKRLEAES 433

Query: 320 NLTPETVDKCPIP 332
               E  ++    
Sbjct: 434 KQAMEAAEQANRA 446


>gi|312142591|ref|YP_003994037.1| PAS/PAC sensor hybrid histidine kinase [Halanaerobium sp.
            'sapolanicus']
 gi|311903242|gb|ADQ13683.1| PAS/PAC sensor hybrid histidine kinase [Halanaerobium sp.
            'sapolanicus']
          Length = 1186

 Score =  357 bits (916), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 128/763 (16%), Positives = 247/763 (32%), Gaps = 78/763 (10%)

Query: 87   WNIDAHGYLKEISEELPKTIGNYAFKM---IGMRLCDVSDILHIDPNNHIGDLLKRQNTW 143
            W  +        S    K +G    ++   I      +      +    I   ++    +
Sbjct: 314  WEWNLENNKAYFSPNFYKMLGYKDDQLQIDIDSAFKIIHPEDKKETLKIIEKAVEELEPF 373

Query: 144  YGKTTLWPIEGTNLYVPIDLAALPIY-SRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
              +  +    G   +  +++           +     G  I              K+  +
Sbjct: 374  AEELRVKCKNGG--WKWVEVRGKSYQLDPRGKAKRILGINI--DIDQKKKQEEALKKSRE 429

Query: 203  KFSHLHEIKKGHSSVEKEKYDIFSQQ----SPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
            KFS L E             +I               +          +    +   ++K
Sbjct: 430  KFSRLSEEAPIGILSADRNGNIDYANSKMIEILGSPGLIETKKINLLKFPLLIERGFSQK 489

Query: 259  YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN---SKESFEYLSHRNHPSLSAYF 315
                 +E      + ++ T        + +      +   +              +    
Sbjct: 490  IEKCMTENEPATYELNYSTKWGKNIWLRVHLTPRHEDDKVTGVQLIVDEITEKKEIQDRL 549

Query: 316  DEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD--- 371
               E       +      F+    G + + N   +    Y S +++         +    
Sbjct: 550  KLSERNFRTFFESMDDMIFISDYRGEISHTNHLTIEKLGY-SKEELAAMSFADIYIQKEG 608

Query: 372  ---APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
                  L+D  A K + L   D   I +  R+   +WN +  +        +        
Sbjct: 609  KEIQQLLADMAAGKIMSLESKDGRLIPSETRIWFGKWNGKEVIFAIAKDVSRQ------- 661

Query: 429  PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR--EGIILSTNRAVSKLFG 486
                               +  + +   +       +  +N   +   +  N +     G
Sbjct: 662  -------------------QEALQKFNKLFNNNP-ALMTVNTLVDFSFIEVNSSFLSKMG 701

Query: 487  YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
            Y  E+I+ +           +     + +I+       +E   L    E   L     I 
Sbjct: 702  YSKEEIIGRNCRELELFADKAKRRKIIKKIIKEGSVNNIELKLLNKRDEVLELLFSGEII 761

Query: 547  KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK--------------ESSHKSDFLARV 592
            +          M DI+  K+ + +L    +  ++               +  KS FLA +
Sbjct: 762  ESQGQQFILTVMTDITVQKRVEEELVKTNQKLQESMDKANKMAVKAEKANELKSQFLANM 821

Query: 593  SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
            SHEIRTPL  I+G++E++       L    Y  Y   I  +G+ +LD VND+LD+SKIE+
Sbjct: 822  SHEIRTPLNIIMGYTELLAKD----LEEDNYKRYIKSIRSAGDSLLDQVNDILDMSKIEA 877

Query: 653  GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712
            G + +++E + L   +    ++       K +  +    N  P +  D    +QI +N+L
Sbjct: 878  GIIEINYEYIDLAALLENITAIFADKVKAKGLDFQLKMDNLPPLVKMDEFRFRQIMINLL 937

Query: 713  SNAIHFTPSGGQIIISTTHTS-------NEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
             NA+ FT SG  I I             N ++ + V+DTG+G+   + E+  K F Q   
Sbjct: 938  DNAVKFTKSG-HIFIGVYCRPVSGKGNNNIKLRIIVQDTGIGIKAEKQEEIFKAFSQENA 996

Query: 766  SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
                   GTGLGL + + +VD   G+  + ST  KG++ +I F
Sbjct: 997  ESTREFGGTGLGLSITRRLVDMMDGQISLQSTAGKGSVFKIEF 1039



 Score = 54.3 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 17/158 (10%), Positives = 46/158 (29%), Gaps = 9/158 (5%)

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
               +++R NK+ +     +L   +EA        N E      +    K+ GY  + + 
Sbjct: 282 LTLLIESRENKKLLSQANQRLKLAMEAAEHTFWEWNLENNKAYFSPNFYKMLGYKDDQLQ 341

Query: 494 --RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII-----IK 546
                    +           + + +     +   +      K      + +      + 
Sbjct: 342 IDIDSAFKIIHPEDKKETLKIIEKAVE--ELEPFAEELRVKCKNGGWKWVEVRGKSYQLD 399

Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
               +        DI + K+++  L  +++   + S  
Sbjct: 400 PRGKAKRILGINIDIDQKKKQEEALKKSREKFSRLSEE 437


>gi|311031362|ref|ZP_07709452.1| Signal transduction histidine kinase [Bacillus sp. m3-13]
          Length = 589

 Score =  357 bits (915), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 92/366 (25%), Positives = 176/366 (48%), Gaps = 23/366 (6%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           +  E++  +L +++E+   G+ +I+  G +   NRA  + F     + L + +   +   
Sbjct: 237 KAQEMQQDRLRTLIESMGSGLILIDGRGYVNLINRAYKETFDADPGEYLYRLYYEAI--- 293

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDIS 562
               +   + EI   ++    ++I L  T E +   +                L  HDI+
Sbjct: 294 EQKEVVTMIEEIFMTEV-SVRKQILLPLTIERRHFEVYGAPIIGVNDEWKGIVLVFHDIT 352

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E K+ +                + DF+A VSHE++TP+T+I GFSE + +          
Sbjct: 353 ELKKLE--------------QMRKDFVANVSHELKTPITSIKGFSETLLDGAMNDKDTLE 398

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
           Y  + + I +  + +  ++ DLLD+SKIE     L+ + + ++E + E   +++  A EK
Sbjct: 399 Y--FLSIILKESDRLQSLIEDLLDLSKIEKQGFRLNPQYLEINELLEEIFVILEGKAREK 456

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
            I +  S       + AD   +KQ+ +N+++NAI +TP+GG++ +      ++EV++ V 
Sbjct: 457 EIDLVLSKPKKELYLFADASRIKQVFINLINNAIAYTPAGGEVKVKVE-EVDKEVVIVVS 515

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG+GM   E+ +  + F ++  ++     GTGLGL + K +V+A+ G   + S   KGT
Sbjct: 516 DTGIGMEQDEIPRIFERFYRVDKARSRNSGGTGLGLAIVKHIVEAHHGSISVTSELNKGT 575

Query: 803 LIEIIF 808
              +  
Sbjct: 576 AFTVKL 581


>gi|312114352|ref|YP_004011948.1| multi-sensor signal transduction histidine kinase [Rhodomicrobium
           vannielii ATCC 17100]
 gi|311219481|gb|ADP70849.1| multi-sensor signal transduction histidine kinase [Rhodomicrobium
           vannielii ATCC 17100]
          Length = 875

 Score =  357 bits (915), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 128/651 (19%), Positives = 252/651 (38%), Gaps = 39/651 (5%)

Query: 182 GIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS 241
           G V         RA      +    + + K+   +++  +  + + Q+P      K  ++
Sbjct: 217 GAVSGADTVLRIRAFSPVNKELVRLIGDNKRLKQAIQDREGILDALQTPVWLRDAKGALT 276

Query: 242 SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN------- 294
            +   Y    D    E+      E     ++ D H ++ ++   +    T+ N       
Sbjct: 277 WVNTAYVTAIDAKSREEAIDKQIELFETRQRTDLHRMSQSRKPGRIKLQTIVNGCVQTYE 336

Query: 295 ------NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPS 347
                         L      +     +        T+DK      V+     LFY N +
Sbjct: 337 AITAPIERGSGGAALDVSMLKTQRDELERQIAANARTLDKVSTGVAVFGVDRSLFYCNDA 396

Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
           F  + + + +  +      S   D  +       +P      D   IA            
Sbjct: 397 FAKIWELE-IAWLAAKPAASEFFDQLRQRRLLPEQPDYRKWRDGKIIAFD--------RN 447

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL----CSILEATSD 463
                   +P  +     ++   +G      D    K  +E +   L       L+  ++
Sbjct: 448 RTLDEFWHLPDGRTVHVVKDCRDDGGLTFLFDDVTEKLALERQFHTLIEGQRETLDHLNE 507

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH--YLTEILSLDL 521
           GIA+   +G +   N +   ++  P + +  +P    + + +  +     +   +     
Sbjct: 508 GIAVFGADGRLDLYNPSYQSIWALPEDMLGDQPHFEDIRKASDMLAPDPDFWHTLRESIT 567

Query: 522 RQTLEKITLGST---KEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578
                + T   T    +   L+  +            +T  D+++ K+ +  L    +  
Sbjct: 568 GMPEARDTFSGTVAKSDGAHLAYVVTPLP---DGGTLVTFADVTDRKRFEEVLLERNEAL 624

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
           E     K+ FL+ VS+E+RTPLT IIGF++++    FG L N +  EY ++I  S  ++L
Sbjct: 625 EASDRLKTAFLSHVSYELRTPLTTIIGFTDMLAEPAFGALNN-KQREYLDHIKTSSEVLL 683

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
           +I+ND++D++ +++G ++L   PV ++  +  A   V+   +   + +    A+    ++
Sbjct: 684 NIINDIIDLAALDAGALDLKLAPVEIESLIEAAELGVRERLSRANVNLDVHIASGAGTVM 743

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
           AD   + Q+  N+LSNAI F+P  G I ++     N  V + V+DTG+G+   E      
Sbjct: 744 ADANRLIQVLYNLLSNAIGFSPEDGTITLACRREKNG-VAISVQDTGLGIPEEEQATVFD 802

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            F     S+  R  G GLGL L K++V+ + G+  + STP  GT + +  P
Sbjct: 803 RFE--SRSKGSRHRGAGLGLTLVKSIVELHKGRIDLRSTPGAGTTVTVFLP 851



 Score = 37.3 bits (85), Expect = 9.6,   Method: Composition-based stats.
 Identities = 32/285 (11%), Positives = 85/285 (29%), Gaps = 17/285 (5%)

Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVD 358
           +F +     + +       G      T++                 + +   L  +    
Sbjct: 102 AFVFREQSRYRAKQLLRQNGRLDALFTIEGNFRALAALEPQVFVIWSDNHARLALHTMQG 161

Query: 359 DIEIAGGLSTL--LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
            I +   L+ L    +    D+ ++    L R         +   T+    E  +     
Sbjct: 162 TIGVPSKLAQLLRFGSWLHPDDASLTAENLARLQSRGEGFVSNASTL----EGHVIEIAG 217

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476
               A+        + +  E V    + ++++  +     IL+A    + + + +G +  
Sbjct: 218 AVSGADTVLRIRAFSPVNKELVRLIGDNKRLKQAIQDREGILDALQTPVWLRDAKGALTW 277

Query: 477 TNRAV-SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
            N A  + +     E+ + K   +F      +     L  +        ++  T+     
Sbjct: 278 VNTAYVTAIDAKSREEAIDKQIELF-----ETRQRTDLHRMSQSRKPGRIKLQTIV---N 329

Query: 536 EKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
             + +   I   +   S  +    D+S  K ++++L        +
Sbjct: 330 GCVQTYEAITAPIERGSGGAAL--DVSMLKTQRDELERQIAANAR 372


>gi|218439784|ref|YP_002378113.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
 gi|218172512|gb|ACK71245.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
          Length = 1478

 Score =  357 bits (915), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 132/758 (17%), Positives = 266/758 (35%), Gaps = 63/758 (8%)

Query: 93   GYLKEISEELPKTIGNYA--FKMIG--MRLCDVSDILHIDPNNHIGDLLKRQNT----WY 144
            G +   +++L + +GN     +++     L +V              L++ +        
Sbjct: 594  GRIILQNDQLRQILGNRPLSTELLENYHHLYEVYHPNGHPYKIEELPLMRSRQQGEVVKS 653

Query: 145  GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK-RLDKK 203
             +  L   +GT   + +D +  PI +   E         ++            K R ++ 
Sbjct: 654  EEMLLVWTDGTQKTLLVDSS--PIVNSQGEIE--VAVATIYDITDYKQVVTDLKNRQEQL 709

Query: 204  FSHLHEIKKGHSSVEKEKYDIFSQQSP---PPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
               +     G  + +    ++                     +     H +D L+ ++  
Sbjct: 710  RLAVEGANLGMWNYDLLSGELIWSNRCKKMFGIAANTQISYEVFINALHPEDRLRVDQAV 769

Query: 261  LLTSEESSLPEQE-DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
              +  +    + E      + + +  +       NN   +          +      E  
Sbjct: 770  QHSISQRQNYDIEMRTQWPDGSLHWVRSIGHAYYNNEGVAHRMAGVVLDITGQKQAQEAL 829

Query: 320  NLTPETVDKCP----IPFFVYSH-----GNLF-----YANPSFLLLTKYKSVDDIEIAGG 365
              + E            F V        G +      Y NP+   + + +  D I     
Sbjct: 830  RKSEERFRVAQELSLDGFTVLKSIRNQSGEIIDFEWTYVNPTAAKILRSQINDLIGKR-- 887

Query: 366  LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
                     L DN +   +          A S  L     + E       +  +  +   
Sbjct: 888  -----LLEILPDNQSNSELFKRYVQVVETANSHDLELYYDSDEIVGWFRNMAVKLEDG-- 940

Query: 426  ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
                      +  + +  +  +     +L   L+    G   ++   + L T+      F
Sbjct: 941  ----VAVSFSDITERKQAEETLRENEQRLNIALKTAKLGSWHLDLSTMELFTSAQYKANF 996

Query: 486  GY-PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
            G     D+        +       ++  +   ++       E        +  +  +   
Sbjct: 997  GLATDADLSYTTLFRLIHPEDRGYVSQMVQHAINT--HTDYEAEYRSIWPDGSIHWINSQ 1054

Query: 545  IKKLPFSSCY----SLTMHDISEWKQEKNKLSH-------AKKIAEKESSHKSDFLARVS 593
               L  ++           DI+  KQ + +          A++ AE+ +  K +FLA +S
Sbjct: 1055 GCVLYSNTGIPLRIVGVNLDITGRKQAQEEQKRLLEREKLAREEAERVNRIKDEFLAVLS 1114

Query: 594  HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
            HE+R+PL  I+G+++++   R G        +    I+R+  L   ++ DLLD+S+I  G
Sbjct: 1115 HELRSPLNPILGWAQLL---RSGSFDKANQNKALEIIERNAKLQAQLIEDLLDVSRILRG 1171

Query: 654  KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713
            K++L+   ++L   +  AI  V+L A  K I I+T+ A ++ +I  D   ++QI  N+LS
Sbjct: 1172 KLSLNVTQLNLFFPIQGAIETVRLSAQAKSIEIKTNLATDVVQISGDAGRIQQIVWNLLS 1231

Query: 714  NAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
            NAI FTP GGQI I      N +  + V+D+G G+    L    + F Q  ++   +  G
Sbjct: 1232 NAIKFTPEGGQIEIGLEQV-NHQAQITVKDSGKGIDPQFLPHVFEHFRQADSTTTRKFGG 1290

Query: 774  TGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFPL 810
             GLGL + + +V+ + G    +S    +G+   + FPL
Sbjct: 1291 LGLGLAIVRHLVEMHGGTVSAYSAGENQGSTFIVQFPL 1328



 Score = 83.5 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 28/259 (10%), Positives = 77/259 (29%), Gaps = 14/259 (5%)

Query: 341 LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400
           +F  N     L  + S   +     +                  +  R+  +       +
Sbjct: 142 IFQQNQDLKYLWIHTSEGQVSPEEIIGKSDYDLFSQPEAQQLTAIKKRAIHSRQPLREEV 201

Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
                   +   +   P    ++    +    +  +  + +  ++++     Q   ILE+
Sbjct: 202 CLTFGANPHYYELFIQPIASFDEQICGITCVAV--DITERKHFEQQLHSATQQSSQILES 259

Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520
            +D    +++       NR   ++  +  ED+L +       +   SV     + +   +
Sbjct: 260 LTDAFFALDQTWQFTYVNRHFEEISEHTREDLLGECIWDVFPEMRQSVFYEEFSLVFEQN 319

Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH------A 574
           L   +    +     E+ +  R        +    +   DI+  K+ + + +        
Sbjct: 320 LP--ISIEAINPINPEQWIEARAYPS----AEGLCVYWQDITLRKETETERNQLLEREKT 373

Query: 575 KKIAEKESSHKSDFLARVS 593
            + A +    +  FL   S
Sbjct: 374 ARAAAELMQQRLAFLDTAS 392



 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 52/558 (9%), Positives = 125/558 (22%), Gaps = 88/558 (15%)

Query: 109 YAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALP 167
              ++IG    D+           I    +  +     +  L      + Y   +L   P
Sbjct: 162 SPEEIIGKSDYDLFSQPEAQQLTAIKKRAIHSRQPLREEVCLTFGANPHYY---ELFIQP 218

Query: 168 IYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ 227
           I S + +  G     +                  ++ S + E          + +     
Sbjct: 219 IASFDEQICGITCVAV--DITERKHFEQQLHSATQQSSQILESLTDAFFALDQTWQFTYV 276

Query: 228 QSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTK 285
                 +    +  +     +    +              E +LP   +       +   
Sbjct: 277 NRHFEEISEHTREDLLGECIWDVFPEMRQSVFYEEFSLVFEQNLPISIEAINPINPEQWI 336

Query: 286 KQYF--------------GTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI 331
           +                    +    E  + L        +A   +      +T      
Sbjct: 337 EARAYPSAEGLCVYWQDITLRKETETERNQLLEREKTARAAAELMQQRLAFLDTASTILA 396

Query: 332 PFFVYSHGNLFYAN---PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML-- 386
               Y        N   P    L     + +      L  L    +  +        L  
Sbjct: 397 GSLDYPTTLQTVVNLIVPDLADLCGLDILQEDRSVNPLIALKAKDQQEEELVRHFTRLYP 456

Query: 387 ----------YRSDRTCIAA------SARLHTIQWNRENSLAMT-----FIPFEKANQFP 425
                      R  +T +              I  + ++   +                 
Sbjct: 457 LDLNDNHHPITRVFQTGLPETLYQITDEDYQAIAKDPQHLHYLRQLGMKSSICVPLKAHE 516

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQ------------------------------LC 455
           E      +     +   N   + + +                                L 
Sbjct: 517 EVFGVMTLALTKTERSYNDDDLRLALELGRRVGLAIENSRLHHQLQQATRQQQDSLTLLE 576

Query: 456 SILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDI----LRKPFTVFLEQNTPSVMN 510
           ++++    G+AI+ ++ G I+  N  + ++ G                     N      
Sbjct: 577 AVIQQMPAGLAIVESKTGRIILQNDQLRQILGNRPLSTELLENYHHLYEVYHPNGHPYKI 636

Query: 511 HYLTEILSLDLRQTL-EKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWK 565
             L  + S    + +  +  L    +    +L +    +  S         T++DI+++K
Sbjct: 637 EELPLMRSRQQGEVVKSEEMLLVWTDGTQKTLLVDSSPIVNSQGEIEVAVATIYDITDYK 696

Query: 566 QEKNKLSHAKKIAEKESS 583
           Q    L + ++       
Sbjct: 697 QVVTDLKNRQEQLRLAVE 714


>gi|218532474|ref|YP_002423290.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium
           chloromethanicum CM4]
 gi|218524777|gb|ACK85362.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium
           chloromethanicum CM4]
          Length = 803

 Score =  357 bits (915), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 100/501 (19%), Positives = 192/501 (38%), Gaps = 19/501 (3%)

Query: 317 EGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
                     D  P   ++    G L + N  +   T     +    A      L  P  
Sbjct: 24  PTMADFRNLADALPQLAWIAEADGTLVWYNRRWYDYTGTTPAEM---ADHGWRKLHHPDH 80

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
            +  A +      +  +          ++           +     N     +   G   
Sbjct: 81  LERAAERFASCIAAGESWQD----TFPLRGKDGRYRWFLSMAEPVRNAEGTVLRWYGTNT 136

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
           +  +TR+ +  +     +  ++++A++  I     +G ++    + +   G   E     
Sbjct: 137 DVTETRLAQDALGHSEQRFRALVDASAAVIWSTTAQGELMPPQPSWAAYTGQSDEAYQGW 196

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-- 553
            +   +  +  + +     E +        E        +E    + +    +       
Sbjct: 197 GWIDAIHPDDRARVAEVWAECVE--RVTVFEVEYRLRRHDEVWRDMEVRGVPVLAEGGSI 254

Query: 554 --YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
             +     DI+  K+ +  + HA+  AE  +  KS FLA +SHE+RTPL+A+IG+SE + 
Sbjct: 255 REWVGLNIDITARKEAEAAIEHARAAAEAANLAKSQFLANMSHELRTPLSAVIGYSE-ML 313

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
            +    LG    +     I+ S   +L ++ND+LDISKIE+G++ L  E   +   + + 
Sbjct: 314 GEELEDLGQAELLPDLRKIESSARHLLGLINDVLDISKIEAGRLTLAAETFDVVSLIEDV 373

Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
            +  Q    +KR   R  F  ++  +  D   ++Q  +N++ NA  F+  G +II+    
Sbjct: 374 TAATQSLITKKRNRFRLDFEGDLGAMHQDQLKLRQSLINLIGNAAKFSEDG-EIILGVRR 432

Query: 732 TSNE---EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                   +   V DTG+G+T  ++ +  + F Q   S   +  GTGLGL + +A V+  
Sbjct: 433 LREGGADWLSFSVSDTGIGLTQEQIGRLFERFSQADESTTRQFGGTGLGLAITRAFVERM 492

Query: 789 MGKFYIFSTPAKGTLIEIIFP 809
            G   + ST  +G    I  P
Sbjct: 493 GGTIGVESTFGEGATFTIRLP 513



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/264 (9%), Positives = 59/264 (22%), Gaps = 13/264 (4%)

Query: 55  TDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI 114
           T Q+ +       +     F         +  W  +A G L   +       G    +M 
Sbjct: 13  TVQDGKVPETGPTMAD---FRNLADALP-QLAWIAEADGTLVWYNRRWYDYTGTTPAEMA 68

Query: 115 GMRLCDVSDILHID-PNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNR 173
                 +    H++         +    +W     L   +G   Y      A P+ +   
Sbjct: 69  DHGWRKLHHPDHLERAAERFASCIAAGESWQDTFPLRGKDGR--YRWFLSMAEPVRNAEG 126

Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP--- 230
                R +G           +      +++F  L +           + ++   Q     
Sbjct: 127 TV--LRWYGTNTDVTETRLAQDALGHSEQRFRALVDASAAVIWSTTAQGELMPPQPSWAA 184

Query: 231 -PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYF 289
                    +     +     D     E +       +    +      +      +   
Sbjct: 185 YTGQSDEAYQGWGWIDAIHPDDRARVAEVWAECVERVTVFEVEYRLRRHDEVWRDMEVRG 244

Query: 290 GTLQNNSKESFEYLSHRNHPSLSA 313
             +        E++      +   
Sbjct: 245 VPVLAEGGSIREWVGLNIDITARK 268


>gi|320159220|ref|YP_004191598.1| CheY-like receiver [Vibrio vulnificus MO6-24/O]
 gi|319934532|gb|ADV89395.1| CheY-like receiver [Vibrio vulnificus MO6-24/O]
          Length = 1320

 Score =  357 bits (915), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 105/506 (20%), Positives = 201/506 (39%), Gaps = 30/506 (5%)

Query: 325 TVDKCPI---PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
            + + P+      +Y    L     +    T   S +  + +    ++L + K     ++
Sbjct: 325 LLHQFPVQQVSIAIYRDDKLIRIAGAGYDDT--ISREISDQSSTQLSVLLSDKPYSMKSL 382

Query: 382 KPVMLYRSDRTCIAA-SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI------- 433
           +       +   +         +  N++    +     +             +       
Sbjct: 383 QGKYTTHVNGGVLELNEIYYFPLCVNKQPVALLELGTVDTLTPLQYQWLSQMLDDLSVSI 442

Query: 434 --EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
                    R  ++K+  +      IL AT + +  ++ +G  L+ N   S+L G  + +
Sbjct: 443 QLSQNVELQRKAEQKVLEQSQLNQEILNATPNPMYCLSAQGKYLTVNAKFSELTGLAMHE 502

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
           I+ +       Q   S     + + LS + + +          +     + +       S
Sbjct: 503 IVGRTPIEVFSQQEASHHFTQVHQELSQE-QCSKNYELSLFDSQGGCRDMLVCEASFNNS 561

Query: 552 SC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
                     + D++E KQ +++L  AK  A+  S  K DFLA +SHEIRTP+ AI+G +
Sbjct: 562 QGRVSGIVGILLDLTERKQMESELREAKDTADAMSRAKGDFLANMSHEIRTPMNAILGMA 621

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
            +  N       +P   +Y   I+ S   +L I+ND+LD SKIE+GK+++     SLDE 
Sbjct: 622 HLALNTEL----DPSQRKYLTRINESAKNLLGIINDILDFSKIEAGKLSVESIDFSLDEV 677

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII 726
                +++   A EK I         +P  ++ D   + Q+ +N+  NA+ FT  G +I+
Sbjct: 678 FENLTNVISFKAQEKGIEFLLDIDPRVPVGLVGDPLRLGQVLVNLCGNAVKFTEKG-EIL 736

Query: 727 IST----THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
           +S       + +  +   V+DTG+G+   ++      F Q   S      GTGLGL ++K
Sbjct: 737 VSVMPESQSSDDVTLRFSVKDTGIGIDKEKIADLFNAFSQADTSITREFGGTGLGLSISK 796

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIF 808
            +V+   G+  + S    G+      
Sbjct: 797 QLVELMGGQLSVSSAVGMGSTFTFTI 822


>gi|146305870|ref|YP_001186335.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp]
 gi|145574071|gb|ABP83603.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp]
          Length = 1165

 Score =  357 bits (915), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 123/652 (18%), Positives = 236/652 (36%), Gaps = 42/652 (6%)

Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRL-DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP 232
           E +G+  F +V   R         + L ++    +  +                    P 
Sbjct: 44  ERTGWPPFDMVENGRYQGISADYLRLLGERLGVQVDAVYYDDWEQALAALRKGEIDILPS 103

Query: 233 HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL 292
             R   + S +     +          P     E  +    D     +           L
Sbjct: 104 VARTPERESWMRFSDPYLISSSLIFSRP-----EVQIQRVADLAGKRVAIERGYVLQQRL 158

Query: 293 QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLT 352
           ++   +     +     +L A      +          +   + +   +   N + L L 
Sbjct: 159 RDEVPDVLLIEALNTEEALRAVSSGRADAY--------LGDMIVASYLIRRHNLTNLELR 210

Query: 353 KYKSVDDIEIAGGLST-------LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405
               +   EI  G+         LLD    S +   +  +  R        + R      
Sbjct: 211 GESGLSSSEIRFGVRRDLPQLVELLDRALASLSGEERETIRVRWLPPLTEFNWRKALQV- 269

Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465
                +   F+       +   +          + +  + +   +   L +++ A  D I
Sbjct: 270 -GWPYVLGLFVLIVFVLIWNRRLTVQ-----IAERQRAEAEARRQRSTLLALINAIPDPI 323

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
              + +G+    N A + +FG   E ++        +              L+  +   L
Sbjct: 324 WFKDCDGVYRGCNPAFAAIFGRSPETVVGCRDEQLFDAELSRERAGLDRRALTSRMP--L 381

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKE 581
           E  T  +  + + +    +                T  DI+  K+ ++ ++ AK +AE+ 
Sbjct: 382 ETETWLTHADGRRVFYDTLRAAFYDDRGQLLGLVGTGRDITVRKEVEDAMARAKALAEQA 441

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
           +  K+DFLA +SHEIRTP+ AIIG S +          +PR  +Y N I ++G  +L ++
Sbjct: 442 AQAKADFLANMSHEIRTPMNAIIGMSHLALKTDL----DPRQRDYLNKIQQAGQHLLGVI 497

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-AD 700
           ND+LD SKIE+GK+ +      L++ +    +L+   A  K + +       +P +L  D
Sbjct: 498 NDILDFSKIEAGKVRVECIEFDLEQVLDNLANLIGDKAAGKGLELLFRRDAQVPCVLLGD 557

Query: 701 LRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEV--ILRVRDTGVGMTNYELEKAM 757
              + QI +N  +NA+ FT  G  ++ I       ++V  +  VRDTG+G++  +  +  
Sbjct: 558 PLRLGQILINYANNAVKFTEHGEVEVSIELEKRDGKQVWLLFSVRDTGIGLSPAQQARLF 617

Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           + F Q  +S   R  GTGLGL + K + +A  G+  + S   +G+      P
Sbjct: 618 ESFQQADSSTTRRYGGTGLGLAICKRLAEAMGGEVGVDSELGRGSRFWCRLP 669



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/144 (13%), Positives = 34/144 (23%), Gaps = 5/144 (3%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS-DILHIDPNNHIGDLLKRQNTWY 144
            W  D  G  +  +       G     ++G R   +    L  +        L  +    
Sbjct: 323 IWFKDCDGVYRGCNPAFAAIFGRSPETVVGCRDEQLFDAELSRERAGLDRRALTSRMPLE 382

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            +T L   +G    V  D      Y    +  G  G G      V  +      R     
Sbjct: 383 TETWLTHADGR--RVFYDTLRAAFYDDRGQLLGLVGTG--RDITVRKEVEDAMARAKALA 438

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQ 228
               + K    +    +       
Sbjct: 439 EQAAQAKADFLANMSHEIRTPMNA 462


>gi|220909146|ref|YP_002484457.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219865757|gb|ACL46096.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 1068

 Score =  356 bits (914), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 113/750 (15%), Positives = 231/750 (30%), Gaps = 30/750 (4%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIG--MRL-CDVSDILHIDPNNHIGDLLKRQNT 142
            WN D        S E  +  G    +           V +      +      L  +  
Sbjct: 188 VWNWDIPTNQVTWSAEYYRLYGLDPARTAPSYQNWLNSVVEQDRDRVHQAAQAALSDRID 247

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
              +  +     T     +      ++    +    R  GI              +R   
Sbjct: 248 LNVEFRILHP--TEGERWLTAIGQTLFDDTGQPK--RMTGIALDITQRKQAEKTLQRYQL 303

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
              +  +I    S   +      +      + R +     L +  A +   L  +++   
Sbjct: 304 LSEYSRDIVLYISRKGQILEANQAAVKAYGYSRNELLNLQLADLRAIQTLPLLWQQFEQA 363

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
           +               +            +              +         + E   
Sbjct: 364 SEGGILFETIHQRKDGSQFPVEVSAQSAVIDGEMGVLSVIRDISDRRRSEIALRKSEEWA 423

Query: 323 PETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
              +    +  + +Y   NL   +     +        +         +           
Sbjct: 424 RLAIQIGRVGGWRLYLDQNLVEMDERLREIWGESKDAVMVPIAKAMERIHPDDRERVKQA 483

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE---KANQFPENMPQNGIEPEDV 438
               +  +         R   I W   +   +               + +   G   +  
Sbjct: 484 VYAAIDPASPGTYEIEYR---IVWEDGSERWVLAKGQAQFEGEAGSRQAVDFFGTLLDIT 540

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV-EDILRKPF 497
           + +  +  +     +L   L A   G    N    I++ +   + +FG P    +     
Sbjct: 541 EHKQAETALRTTAERLGLALTAAKLGDWSWNAATDIVTFSEQAAAMFGIPPGPYMTWSQI 600

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYS 555
              L  +  +     + + ++      +E   +     E+ ++ +   +           
Sbjct: 601 QNLLHVDDRARARLQVEQAIAEHSDYDIEYRVVDRQGRERWIAAKGRAQYDSSGQVLGML 660

Query: 556 LTMHDISEWKQEKNKLSHAKKIAE-------KESSHKSDFLARVSHEIRTPLTAIIGFSE 608
             + DI+  KQ + +                + +  K +FLA +SHE+R+PL  I+G+S 
Sbjct: 661 GVVQDITHRKQAEAEREELLARERAAREAAEQANRIKDEFLAVLSHELRSPLNPILGWS- 719

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
             K    G L   +  +    I+R+  L  +++ DLLD+S+I  GK++L    V L   +
Sbjct: 720 --KLLLNGKLNLAKTQQALTTIERNARLQSELIEDLLDVSRILQGKLSLSVSSVDLASTI 777

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
             AI  V+L A  K I I T  A ++  +  D   ++Q+  N++SN + FTP+GG++ + 
Sbjct: 778 QAAIETVRLAAEAKSIQIETRLAPDVGLVAGDSTRLQQVVWNLVSNGVKFTPAGGRVAVR 837

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                  +  + + DTG G+    L      F Q   +   +  G GLGL + + +V+ +
Sbjct: 838 LEQLEQ-QAQITISDTGKGIAPDFLPHVFDYFRQEDGATTRKFGGLGLGLAIVRHLVELH 896

Query: 789 MGKFYIFS-TPAKGTLIEIIFPLYDTSHPH 817
            G     S     G    +  PL  T  P+
Sbjct: 897 GGTIQAHSPGEGLGATFTVRLPLLPT-QPN 925



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 24/278 (8%), Positives = 73/278 (26%), Gaps = 15/278 (5%)

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIA 363
             +         + E      +    +  + +     +   +             +    
Sbjct: 33  ITDRKQADLARQQQEQHFKIALQTAKLGSWEHDLTTGVLTCSAQCKANFGLPPDAEFTHD 92

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
              + L    +     AI+  +  R+D               +  +   +        + 
Sbjct: 93  TLFAALHPDDRPRVEAAIQRAIAQRTD-----YEVEERCYHPDG-SLHWLIVRGRLVYDA 146

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
               +   G+  +    +  ++ +     +L    +A + G+   +     ++ +    +
Sbjct: 147 NDTPIRMVGVTLDITPQKQTEKTLRQSEERLRIAQQAANAGVWNWDIPTNQVTWSAEYYR 206

Query: 484 LFGYPVEDIL--RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
           L+G          + +   + +     ++      LS  +   L          E    L
Sbjct: 207 LYGLDPARTAPSYQNWLNSVVEQDRDRVHQAAQAALSDRI--DLNVEFRILHPTEGERWL 264

Query: 542 RIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAK 575
             I + L   +      +    DI++ KQ +  L   +
Sbjct: 265 TAIGQTLFDDTGQPKRMTGIALDITQRKQAEKTLQRYQ 302


>gi|212634252|ref|YP_002310777.1| PAS domain-containing protein [Shewanella piezotolerans WP3]
 gi|212555736|gb|ACJ28190.1| PAS domain protein [Shewanella piezotolerans WP3]
          Length = 1572

 Score =  356 bits (914), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 115/585 (19%), Positives = 226/585 (38%), Gaps = 44/585 (7%)

Query: 265  EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY----LSHRNHPSLSAYFDEGEN 320
               S  E+   +  +            ++++S +  E     L       +     + + 
Sbjct: 497  GIRSQDERVQLYDTSGEMIFVSVSTDLVKDDSGQVTEVRFSLLDISEQEKVRLEMLKNQQ 556

Query: 321  LTPETVDKCPIPFFVYSHG-------NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
                 ++      + Y           L Y +P+  ++T Y S D +             
Sbjct: 557  QYQVLLENIQGVVYRYRVDIHDEFEYTLQYLSPNVEVVTGYSSQDFLGDN--ARRTFVDI 614

Query: 374  KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
             + ++       L  + +   +   R   I+   +    +        ++  +    +G 
Sbjct: 615  VIPEDRKELKAELSIAYQEQ-SFVTRDIRIKNAAKELRYLQIKAQFVYDEIGDTYYFDGT 673

Query: 434  EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
              +  + ++ + ++++   +L    E+   G+         +  N   + + GY V D+ 
Sbjct: 674  LFDITEQKLAENRLQLSEDKLKVAAESARMGMWDYYPTENKVVVNTMYANMLGYEVLDLC 733

Query: 494  ------------RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
                         + +   +  +    +   L      +  Q L +      K+     +
Sbjct: 734  IENEQWSTLNAGEQTWLELVHPDDREAVLDTLKAQSKSN-PQLLMREFRMQRKDGGYDWI 792

Query: 542  RIIIKKLP------FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
             + I ++        +   S    +I+E K  + +L+ A +IA+  +  K +FLA +SHE
Sbjct: 793  -MSIGQVHHYTEEGDAGRISGVHLNINESKALQRELASAIEIADDANRAKGEFLANMSHE 851

Query: 596  IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
            I TP+ AIIG + +            +   Y     RS   +L I+ND+LD SKIE+GK+
Sbjct: 852  IHTPMNAIIGMTHLALKTELTK----QQHSYIEKSHRSAQSLLGIINDILDFSKIEAGKL 907

Query: 656  NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSN 714
            ++      L++ + + I+ V +   EK + +       IP IL  D   + QI  N+ +N
Sbjct: 908  DIETIQFRLEDVLEDIINFVGIKVAEKELELLFDIDPTIPAILQGDPLRLAQILTNLANN 967

Query: 715  AIHFTPSGGQII-ISTTHTSNEEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
            A+ FT  G  II +S    +++EV     V DTG+GMT  + +   K F Q   S   + 
Sbjct: 968  AVKFTEHGSVIIGVSIEKLTDDEVTLKFSVTDTGIGMTAEQQQGLFKAFSQADASTTRKY 1027

Query: 772  EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI--IFPLYDTS 814
             GTGLGL + K + D   G+  + S   KG++     +FP+ +  
Sbjct: 1028 GGTGLGLAICKNLADLMGGEIGVSSEVNKGSIFYFESVFPIVEHH 1072



 Score = 57.7 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 39/400 (9%), Positives = 103/400 (25%), Gaps = 39/400 (9%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151
            G   + + +     G        +   DV +  +   +      L+   +   +  L+ 
Sbjct: 450 DGNFIKHNRQFSLLAGVRREAFKSVNWRDVINKENDPIDTVFKQGLRGIRSQDERVQLYD 509

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
             G  ++V +  +   +   + + +  R F ++ ++  +     + K   +    L  I+
Sbjct: 510 TSGEMIFVSV--STDLVKDDSGQVTEVR-FSLLDISEQEKVRLEMLKNQQQYQVLLENIQ 566

Query: 212 K-------GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
                         +      S                        D V+  ++  L   
Sbjct: 567 GVVYRYRVDIHDEFEYTLQYLSPNVEVVTGYSSQDFLGDNARRTFVDIVIPEDRKELKAE 626

Query: 265 ------EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES----FEYLSHRNHPSLSAY 314
                 E+S +                +     + +   ++                   
Sbjct: 627 LSIAYQEQSFVTRDIRIKNAAKELRYLQIKAQFVYDEIGDTYYFDGTLFDITEQKLAENR 686

Query: 315 FDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL---- 369
               E+      +   +  +  Y   N    N  +  +  Y+ +D        STL    
Sbjct: 687 LQLSEDKLKVAAESARMGMWDYYPTENKVVVNTMYANMLGYEVLDLCIENEQWSTLNAGE 746

Query: 370 -----LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
                L  P   +          +S+   +    R+   + +      M+        + 
Sbjct: 747 QTWLELVHPDDREAVLDTLKAQSKSNPQLLMREFRMQ--RKDGGYDWIMSIGQVHHYTEE 804

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
            +    +G+     +++  +R+       L S +E   D 
Sbjct: 805 GDAGRISGVHLNINESKALQRE-------LASAIEIADDA 837



 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/158 (12%), Positives = 60/158 (37%), Gaps = 13/158 (8%)

Query: 430 QNGIEPEDVDTR--INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
           +  I+ ++++ +  +  ++++     L  + E +    A +N +G  +  NR  S L G 
Sbjct: 407 RLQIDNDNLERKIGLRTKELQEREEALWDLYENSFVAYASVNVDGNFIKHNRQFSLLAGV 466

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR--QTLEKITLGSTKEEKLLSLRIII 545
             E      +   + +         +  +    LR  ++ ++         +++ + +  
Sbjct: 467 RREAFKSVNWRDVINKEN-----DPIDTVFKQGLRGIRSQDERVQLYDTSGEMIFVSVST 521

Query: 546 KKLPFSSCYSLTMH----DISEWKQEKNKLSHAKKIAE 579
             +   S     +     DISE ++ + ++   ++  +
Sbjct: 522 DLVKDDSGQVTEVRFSLLDISEQEKVRLEMLKNQQQYQ 559


>gi|186684867|ref|YP_001868063.1| multi-component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186467319|gb|ACC83120.1| multi-component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 989

 Score =  356 bits (914), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 93/384 (24%), Positives = 181/384 (47%), Gaps = 24/384 (6%)

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
           + +  + ++     +   IL+   D I  IN    I   N+   K+FGY  ++++ +   
Sbjct: 581 ERQQTQEELRFSQARFARILDIADDAIISINGFHNITLFNQGAEKIFGYCAQEVIGQGLD 640

Query: 499 VFLEQNTPSVMNHYLTEILSL---DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-- 553
           + L Q        ++ +         R    +   G  K+         I K+       
Sbjct: 641 LLLPQRFFQAHRQHVADFGQSPNVARRMGERREIYGRRKDGSEFPAEASISKIDMGDEIF 700

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
           Y++ + D++E KQ +                K +F++ VSHE+RTPLT+I G   ++ + 
Sbjct: 701 YTVILRDVTERKQIE--------------RMKDEFVSVVSHELRTPLTSIYGSLGMLASG 746

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
              P  + +          S   ++ ++ND+LDI +IESGK  +  E  ++ + +++A++
Sbjct: 747 LL-PTDSEQGKRLLQIAADSTERLVRLINDILDIERIESGKAKMEAEICNIVDLITQAVN 805

Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
           ++Q  A++  + +  S +    ++LAD   + Q   N+LSNAI F+ +G  + +      
Sbjct: 806 VIQPLADKAGVTL--SISALSGQVLADCDRIVQTLTNLLSNAIKFSSAGSTVWLG-AQQE 862

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
            +EV+L ++DTG G+   +LE   + F Q+ +S     +GTGLGL + K+++  + G+ +
Sbjct: 863 GDEVLLTIKDTGRGIPTDKLESIFERFQQVDSSDSRNHDGTGLGLAICKSIMQQHGGRIW 922

Query: 794 IFSTPAKGTLIEIIFPLYDTSHPH 817
             S   +G+   +  PL+ T  PH
Sbjct: 923 AESILGEGSTFYVTLPLFGT-FPH 945


>gi|170740901|ref|YP_001769556.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
 gi|168195175|gb|ACA17122.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
          Length = 984

 Score =  356 bits (914), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 115/621 (18%), Positives = 241/621 (38%), Gaps = 33/621 (5%)

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
           + +G   V  ++    + +     L +  +  +    Y       +   +      ++ L
Sbjct: 121 MDQGVILVGPDRTVQVANRRAREWLGLSEEFIAGRPSYREVRARARLSPHWGTLVSDTPL 180

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
              E+          ++   GT+        E        +        E+      +  
Sbjct: 181 QLSEEDPEATHTIAERRNADGTVLEIRTVRTEDGGLIQTLTDITERRSAEDRYRLLAENA 240

Query: 330 PIPFFVYSHGN--LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
                +   G     Y +PS   +  ++  +        + L    +L  ++  +     
Sbjct: 241 TDLISLRPRGRDGRVYVSPSSRAVVGWEPEE-------FAQLRADQRLHPDDLDRVRREV 293

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
            +           H ++    + + +           PE         +    R     +
Sbjct: 294 TALTPDSPRRTSEHRLRHKAGHYVWVESTLLLTKPGTPEEA-VIVASRDVTARRAADAAL 352

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
                +   + E T D IA  +  G++   + AV ++ GYP +++L +     +  +   
Sbjct: 353 RESEARHRLLAERTGDIIARADLNGVLRYLSPAVERVIGYPADELLGRSALSHIHPDDRP 412

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-----CYSLTMHDIS 562
           ++    + ++        +       +    + L +    L          +     D++
Sbjct: 413 MVMRRYSALVEAGPGARAKFEYRVRHRHGHDVWLEVNPTVLYDEGDLAPLGFVDVARDVT 472

Query: 563 EWKQEKNKLSHA-------KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
             K    +L+ A       +  AE  S  K+DFLA +SHEIRTPL+++IG++E++ +   
Sbjct: 473 ARKAVDAELAAAREQAEAARIQAEHASQAKTDFLASMSHEIRTPLSSVIGYTEMLLDD-- 530

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
                 R    A+ I  +G+ +L +V+D+LD SKIE+G+++L   P +LD  +  A+++V
Sbjct: 531 -AELTQRQHLQASRIRSAGSALLTVVDDILDFSKIEAGQVDLDLVPFALDGLIENAVAIV 589

Query: 676 QLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
           +  A  K + IR      +PR ++ D   ++QI LN L+NA+ FT  G +++++     +
Sbjct: 590 RQLAERKGLEIRVELDPALPRALVGDQNRLRQILLNFLNNALKFTRRG-RVVLAVEKAGD 648

Query: 735 EE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
                 +   V DTG+G+   +  +  K F Q+  S +    GTGLGL ++K +++   G
Sbjct: 649 GAGGWPIRFSVTDTGIGIAPEQQARLFKRFSQVDGSIRREFGGTGLGLAISKKLIELMGG 708

Query: 791 KFYIFSTPAKGTLIE--IIFP 809
              + S P +G+     ++ P
Sbjct: 709 AIGVRSAPGEGSTFWFEVLLP 729



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/243 (8%), Positives = 61/243 (25%), Gaps = 3/243 (1%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
             D +G L+ +S  + + IG  A +++G                     L          
Sbjct: 372 RADLNGVLRYLSPAVERVIGYPADELLGRSALSHIHPDDRPMVMRRYSALVEAGPGARAK 431

Query: 148 TLWPIEGTNLY-VPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
             + +   + + V +++    +Y    + +      +           A      ++   
Sbjct: 432 FEYRVRHRHGHDVWLEVNPTVLYDE-GDLAPLGFVDVARDVTARKAVDAELAAAREQAEA 490

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
                +  S  + +     S +   P   +      L +  A        +   + ++  
Sbjct: 491 ARIQAEHASQAKTDFLASMSHEIRTPLSSVIGYTEMLLD-DAELTQRQHLQASRIRSAGS 549

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
           + L   +D    +  +  +                 ++     +     +    L P   
Sbjct: 550 ALLTVVDDILDFSKIEAGQVDLDLVPFALDGLIENAVAIVRQLAERKGLEIRVELDPALP 609

Query: 327 DKC 329
              
Sbjct: 610 RAL 612



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 26/365 (7%), Positives = 77/365 (21%), Gaps = 29/365 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGM-RLCDVSDILHIDPN-----NHIGDLLKRQNT 142
           +     ++  +    + +G     + G     +V     + P+     +     L  ++ 
Sbjct: 128 VGPDRTVQVANRRAREWLGLSEEFIAGRPSYREVRARARLSPHWGTLVSDTPLQLSEEDP 187

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
               T           + I      + + +           +             + L +
Sbjct: 188 EATHTIAERRNADGTVLEI----RTVRTEDGGL-----IQTLTDITERRSAEDRYRLLAE 238

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
             + L  ++       ++     S  S         + + L        D L   +  + 
Sbjct: 239 NATDLISLRPR----GRDGRVYVSPSSRAVVGWEPEEFAQLRADQRLHPDDLDRVRREVT 294

Query: 263 TSEE--SSLPEQEDFHTINLNQYTKKQYFGTLQ---NNSKESFEYLSHRNHPSLSAYFDE 317
                      +        +    +      +                   +  A   E
Sbjct: 295 ALTPDSPRRTSEHRLRHKAGHYVWVESTLLLTKPGTPEEAVIVASRDVTARRAADAALRE 354

Query: 318 GENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
            E       ++          +G L Y +P+   +  Y + + +    G S L       
Sbjct: 355 SEARHRLLAERTGDIIARADLNGVLRYLSPAVERVIGYPADELL----GRSALSHIHPDD 410

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
               ++             A         +  +                  +    +  +
Sbjct: 411 RPMVMRRYSALVEAGPGARAKFEYRVRHRHGHDVWLEVNPTVLYDEGDLAPLGFVDVARD 470

Query: 437 DVDTR 441
               +
Sbjct: 471 VTARK 475



 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/137 (14%), Positives = 45/137 (32%), Gaps = 8/137 (5%)

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP--SVMNH 511
           L   L+    G+ ++  +  +   NR   +  G   E I  +P    +            
Sbjct: 114 LGKTLDCMDQGVILVGPDRTVQVANRRAREWLGLSEEFIAGRPSYREVRARARLSPHWGT 173

Query: 512 YLTEI---LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568
            +++    LS +  +    I      +  +L +R              T+ DI+E +  +
Sbjct: 174 LVSDTPLQLSEEDPEATHTIAERRNADGTVLEIR---TVRTEDGGLIQTLTDITERRSAE 230

Query: 569 NKLSHAKKIAEKESSHK 585
           ++     + A    S +
Sbjct: 231 DRYRLLAENATDLISLR 247



 Score = 42.7 bits (99), Expect = 0.28,   Method: Composition-based stats.
 Identities = 36/450 (8%), Positives = 98/450 (21%), Gaps = 25/450 (5%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY-GKTT 148
              G    +S      +G    +   +R         +D        L   +     +  
Sbjct: 250 GRDGR-VYVSPSSRAVVGWEPEEFAQLRADQRLHPDDLDRVRREVTALTPDSPRRTSEHR 308

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           L    G  ++V   L      +                        A  +  + +   L 
Sbjct: 309 LRHKAGHYVWVESTLLLTKPGTPEEAV-----IVASRDVTARRAADAALRESEARHRLLA 363

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHL---RMKNKVSSLTEYYAHKDDVLKTEKYP---LL 262
           E      +       +         +        +      + H DD     +     + 
Sbjct: 364 ERTGDIIARADLNGVLRYLSPAVERVIGYPADELLGRSALSHIHPDDRPMVMRRYSALVE 423

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK-ESFEYLSHRNHPSLSAYFDEGENL 321
               +    +      + +    +     L +        ++      +     D     
Sbjct: 424 AGPGARAKFEYRVRHRHGHDVWLEVNPTVLYDEGDLAPLGFVDVARDVTARKAVDAELAA 483

Query: 322 TPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
             E  +       + +             ++         + G    LLD  +L+    +
Sbjct: 484 AREQAEAA----RIQAEHASQAKTDFLASMSHEIRTPLSSVIGYTEMLLDDAELTQRQHL 539

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN-------GIE 434
           +   +  +    +     +          + +  +PF         +          G+E
Sbjct: 540 QASRIRSAGSALLTVVDDILDFSKIEAGQVDLDLVPFALDGLIENAVAIVRQLAERKGLE 599

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
                     R +  +  +L  IL    +      R G ++          G        
Sbjct: 600 IRVELDPALPRALVGDQNRLRQILLNFLNNALKFTRRGRVVLAVEKAGDGAGGWPIRFSV 659

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
               + +     + +    +++     R+ 
Sbjct: 660 TDTGIGIAPEQQARLFKRFSQVDGSIRREF 689


>gi|298528358|ref|ZP_07015762.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298512010|gb|EFI35912.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 1012

 Score =  356 bits (914), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 98/393 (24%), Positives = 171/393 (43%), Gaps = 14/393 (3%)

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
            E  + R  +  +     ++ ++ ++  D I ++  +G I   N     +FGY  ++++ 
Sbjct: 423 NELAERRRAEESLRESQERMQAVTDSAHDAIIMMGPDGEISYWNPMAESIFGYTAQEVMG 482

Query: 495 KPFTVFLEQNTP-----SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
           K     L            M  +        + +T+E   +G    E  +SL +    L 
Sbjct: 483 KSLHHLLAPERYHTDITKAMPEFQRTGQGNAVGKTIELSAIGKDGLEIPISLSMSSVLLQ 542

Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                     DIS  K  + +L  AK+ AE  +  KS FLA +SHE+RTP   I+G  ++
Sbjct: 543 GRWHAVGIARDISRRKAAEKELIQAKEQAEAANIAKSKFLANMSHELRTPFNGIMGMMQL 602

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           ++        N    E+ N   +S    + ++ D+L++S IE+GKM++        E + 
Sbjct: 603 LQTTDL----NDEQQEFVNLAIQSSERFVRLLTDILELSNIEAGKMSICSAEFRTGELLE 658

Query: 670 EAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ---- 724
               L    A +K I++  S   ++P  +  D   VKQ+   ++ NA+ FT SG      
Sbjct: 659 SLSDLFSAEALKKGIVLEFSMEPDVPEQVSGDKTRVKQVMFTLVGNALKFTESGSVQVHL 718

Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
             IS     +  +   V DTG+G+ + +L     PF Q+  S   + +G GLGL L K +
Sbjct: 719 TSISGAKGGDTRLKFSVSDTGIGIPDDKLSTLFNPFVQVDGSYTRKYQGAGLGLSLVKRL 778

Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
           VD   G   + S   +GT + ++ P    +  H
Sbjct: 779 VDMMNGNISVESEVDRGTTVHVVLPFTLPAVDH 811



 Score = 43.9 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 17/143 (11%), Positives = 36/143 (25%), Gaps = 8/143 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL----HIDPNNHIGDLLKRQNTWY 144
           +   G +   +       G  A +++G  L  +         I           + N   
Sbjct: 456 MGPDGEISYWNPMAESIFGYTAQEVMGKSLHHLLAPERYHTDITKAMPEFQRTGQGNAVG 515

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
               L  I    L +PI L+   +  + R    +   GI               +  ++ 
Sbjct: 516 KTIELSAIGKDGLEIPISLSMSSVLLQGR----WHAVGIARDISRRKAAEKELIQAKEQA 571

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQ 227
              +  K    +    +      
Sbjct: 572 EAANIAKSKFLANMSHELRTPFN 594


>gi|309791141|ref|ZP_07685674.1| Signal transduction histidine kinase [Oscillochloris trichoides
           DG6]
 gi|308226839|gb|EFO80534.1| Signal transduction histidine kinase [Oscillochloris trichoides
           DG6]
          Length = 499

 Score =  356 bits (914), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 106/374 (28%), Positives = 170/374 (45%), Gaps = 26/374 (6%)

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
            +I+E   DGI II+    I + N A  ++FGY  ++I+  P    +             
Sbjct: 124 QAIVEYAVDGIMIIDEHDRITTFNPAAERMFGYRADEIIGHPIAHLIPDPLHRQY----- 178

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK--LPFSSCYSLTMHDISEWKQEKNKLS 572
                    +L    +G  K+     + I   +  L     Y L + D +  KQ + +L 
Sbjct: 179 ------KLISLGDEIIGRHKDTHSFPMDISSGQIILNNKRLYVLILRDATRRKQVEEELE 232

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
            A+  AE  S  KS FLA +SHE+RTPL AIIG+SE++                   I R
Sbjct: 233 RARDAAEAASRAKSTFLANMSHELRTPLNAIIGYSELLIEDAVDA-QEEDLESDLRRIHR 291

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
           +G  +L +++D+LDISKIE+GKM+L +E  +L   +S+    V   A+++     T ++ 
Sbjct: 292 AGTHLLGLISDILDISKIEAGKMDLRYEYFALPPMLSDVDLTVAPLASQRGNRYITQYSG 351

Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-----------VILRV 741
               I AD   V+QI +N+L NA  FT   G I +      ++            ++  V
Sbjct: 352 QPGSIYADPVRVRQILINLLGNACKFT-ENGTISLRIAIEGDDYAAGHDKSTGNAILFEV 410

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            DTG+GM+  ++ +  +PF Q  +S   +  GTGLGL L +       G   + S   +G
Sbjct: 411 TDTGIGMSEDQMARLFQPFTQADDSTTRKYGGTGLGLALTRYFCQMMGGTVDVVSRLGQG 470

Query: 802 TLIEIIFPLYDTSH 815
           +   +  P+ D   
Sbjct: 471 STFMVRLPMRDPEE 484



 Score = 45.0 bits (105), Expect = 0.054,   Method: Composition-based stats.
 Identities = 16/143 (11%), Positives = 39/143 (27%), Gaps = 7/143 (4%)

Query: 323 PETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN--- 378
              V+       +      +   NP+   +  Y++ + I     ++ L+  P        
Sbjct: 124 QAIVEYAVDGIMIIDEHDRITTFNPAAERMFGYRADEIIGHP--IAHLIPDPLHRQYKLI 181

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
           +    ++    D            I  N +    +      +  Q  E + +     E  
Sbjct: 182 SLGDEIIGRHKDTHSFPMDISSGQIILNNKRLYVLILRDATRRKQVEEELERARDAAEAA 241

Query: 439 DTRINKRKMEIEVMQLCSILEAT 461
               +   +     +L + L A 
Sbjct: 242 SRAKSTF-LANMSHELRTPLNAI 263



 Score = 45.0 bits (105), Expect = 0.056,   Method: Composition-based stats.
 Identities = 21/219 (9%), Positives = 54/219 (24%), Gaps = 14/219 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID H  +   +    +  G  A ++IG  +  +      DP +    L+   +    +  
Sbjct: 137 IDEHDRITTFNPAAERMFGYRADEIIGHPIAHLIP----DPLHRQYKLISLGD----EII 188

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +  +  + I  +   I +  R +       I+             +R         
Sbjct: 189 GRHKDTHSFPMDIS-SGQIILNNKRLY-----VLILRDATRRKQVEEELERARDAAEAAS 242

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
             K    +    +              +        E     D          L    S 
Sbjct: 243 RAKSTFLANMSHELRTPLNAIIGYSELLIEDAVDAQEEDLESDLRRIHRAGTHLLGLISD 302

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
           + +        ++   +      + ++   +   L+ + 
Sbjct: 303 ILDISKIEAGKMDLRYEYFALPPMLSDVDLTVAPLASQR 341


>gi|183220127|ref|YP_001838123.1| putative two-component sensor protein [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|189910247|ref|YP_001961802.1| two component response regulator sensor histidine kinase/response
           regulator subunits [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167774923|gb|ABZ93224.1| Sensor histidine kinase and response regulator of a two component
           complex [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|167778549|gb|ABZ96847.1| Putative two-component sensor protein [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
          Length = 1164

 Score =  356 bits (914), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 141/767 (18%), Positives = 263/767 (34%), Gaps = 55/767 (7%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMI-GMRLCDVSDILHIDPNNHIGDLL---KRQ 140
           F +  D+   +  +S  +   +G        GM   +            I +     ++Q
Sbjct: 125 FRYKFDSEFLITYVSPNVSLNLGYQTGDFKKGMLKIENLVHPDDKKQIEIEEKEYINQKQ 184

Query: 141 NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
            T+  +      +G  +Y+  + + +  Y              +       +     K  
Sbjct: 185 RTYQREFRFKKPDGHYIYIS-EYSVVSYYDSYPT----EKISYLSDISERKEKELEIKNQ 239

Query: 201 DKKFSHLH---EIKKGHSSVEKEKYDIFSQQ----------SPPPHLRMKNKVSSLTEYY 247
             + + +    E     ++V   + D+                 P   + N  ++   Y 
Sbjct: 240 RDELNRIRVLFEETNAAANVGAWEVDLVHNSIYWAKETKRIHEVPEDYVPNLETAFQFYP 299

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS---KESFEYLS 304
              + +   + +        S  +     T        +     +  N    +    +  
Sbjct: 300 VESEQIALKKAFEEAIKNRKSYEQILQIKTFTGKSKWVRTIGHGVFENEKCIRVFGSFQD 359

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCP-IPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEI 362
             N  +L    +E  +     +D    +       +G + + N       +Y + + I  
Sbjct: 360 ITNSVNLDKQKEEALSKLETILDATTHVTIIGTDINGIITHFNKGAEYHLQYTAEEMIGK 419

Query: 363 AGGL------STLLDAPKLSDN---NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
                       L  A  LS                     A  +   T          +
Sbjct: 420 TSPSILHKEDEVLYRAESLSQEFGVPIFGFETFVHKA-RLGAFDSHEWTYIRKDGTEFPV 478

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
             +     N   E     GI  +    +  +  +     +    LE + DGI   N E  
Sbjct: 479 QLVITASKNPKGEITGFLGIGIDISAQKATEEALRESERRWQFALEGSGDGIWDWNAETD 538

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL--DLRQTLEKITLG 531
            +  +     + GY   +I     + + ++  P  +N  L  +                 
Sbjct: 539 QVYFSNQWKAMLGYADSEI-GTDISEWEKRVHPDDLNQCLLALEKHYNGETNIYMNEHRM 597

Query: 532 STKEEKLLSLRII---IKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
             K+     +      I++           T  DI+  K  +N L  A++ AE  S  KS
Sbjct: 598 KCKDGSYKWILDRGKVIERNEDGKPLRVIGTHTDITHRKILENDLIIAREKAENASIAKS 657

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
           +FLA +SHEIRTPL  +IGF++++         N    +Y   +  S   +LD++ND+LD
Sbjct: 658 NFLANMSHEIRTPLNGVIGFADLLMRTDL----NQVQRKYMETVHLSALSLLDLINDILD 713

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVK 705
            SKIESGKM L+ E V++ + + +   +V+  A EK + +  + +  +PR +  D   ++
Sbjct: 714 FSKIESGKMELYKERVNIFDLLHQIAEIVKHKAYEKGLELILNISPKVPRNVFVDSLRLR 773

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDTGVGMTNYELEKAMKPFG 761
           QI LN++ NA+ FT  G +I I  T T       E +  V DTG+G+      K  + F 
Sbjct: 774 QILLNLIGNALKFTLKG-EIQIKLTATPVNQNEFEFLFEVIDTGIGINKENQNKIFEVFA 832

Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           Q  +S   +  GTGLGL ++  ++     K  + S    G+     F
Sbjct: 833 QADSSTTRQFGGTGLGLSISSKLLQLFDSKIELESELNHGSRFYFKF 879


>gi|241205856|ref|YP_002976952.1| PAS/PAC sensor hybrid histidine kinase [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240859746|gb|ACS57413.1| PAS/PAC sensor hybrid histidine kinase [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 1131

 Score =  356 bits (914), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 108/514 (21%), Positives = 202/514 (39%), Gaps = 32/514 (6%)

Query: 320 NLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
                 +   P+   +  +   + Y N  F  + +    D  +    +  +    +L   
Sbjct: 328 RDIENILRSLPVGVLILDNDHRILYVNDEFYGIWELPLDDPFDGRPFIDVIRRNYELGRY 387

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQ--------WNRENSLAMTFIPFEKANQFPENMPQ 430
           +  +                 L   +        W    S+                   
Sbjct: 388 DGTQT------PEEIYDFRKHLFETEEPEPIELGWAGGKSVIFDSRRISNDRILLTYADI 441

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490
             +   + +    +  +E     +     A   G+A++ ++GII  +N A+S +   P  
Sbjct: 442 TAVREREKEIHEARAALERLGEMMRDATHAMPQGLAVV-QDGIIKMSNEALSDILQIPAT 500

Query: 491 DI-----LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
            +         F     +         + +    ++   L   T+     E+ +++   +
Sbjct: 501 YLEPGEGWIGMFEFCAARGDFHDAAGEILQGWRDNIAARLPISTVFHVGGERWVNMDATV 560

Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
            K      +     D++E K  + +L      AE     KS+FLA +SHEIRTP+  ++G
Sbjct: 561 SK---GQHWVALFTDVTELKSREEELRQLLSRAEAADRAKSEFLANMSHEIRTPMNGVLG 617

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
            +E++           R   + + I +SGN +L I+ND+LD SKI++G+M L      + 
Sbjct: 618 MAELLAKTNLDT----RQKTFVDIIVKSGNALLTIINDILDFSKIDAGQMKLRKAAFDIT 673

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ 724
           EAV +  +L+  +A EK I +    A ++P  ++ D    +QI  N++ NA+ FT  G  
Sbjct: 674 EAVEDVATLLSSHAAEKNIELLVRAAPDLPAAVIGDAGRFRQIVTNLVGNAVKFTERGHV 733

Query: 725 -IIISTTHTSNEEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
            + +     +  E++  +R+ DTG+G+   +LE     F Q+  S   R EGTGLGL + 
Sbjct: 734 FVDVGFQPAAGGEIMASIRIEDTGIGIPPEKLESVFDKFSQVDASSTRRHEGTGLGLAIT 793

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
             +VD   G   + S   KG++  I  P    + 
Sbjct: 794 AGLVDLFGGYLNVESEWGKGSVFTINLPFAVAAA 827



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 60/521 (11%), Positives = 132/521 (25%), Gaps = 96/521 (18%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSD-ILHIDPNNHIGDLLKRQNTWYGKTTLW 150
                 ++E   + +G      IG R  ++ D     D  +     L             
Sbjct: 28  ELRYVAVNEAYARFLGREISDFIGGRSRELLDRPEEEDREDKERRAL------------- 74

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
                                     G     I           A G   ++        
Sbjct: 75  ------------------------VFGTEENAICFD--------AAGLSHERIQIE---- 98

Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270
               S      Y +   +   P  R        ++     D  +  +   +         
Sbjct: 99  --SFSPSLDRAYVLGIFEVREPTRRAIGDPGIASDPGMTGDAGVAADFARV--------- 147

Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330
            +E    ++            L  N+    +        +         +L    ++  P
Sbjct: 148 -REALEQLDYPIGIFAGDGRPLVVNAAYRNDAKPAAVSDAAWHESVNELDLLRTILEDLP 206

Query: 331 IPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389
           +  FV      L YAN  +   + +     + +        +   L    AI    L   
Sbjct: 207 VAAFVRDEKHRLVYANQYYETFSGHSRSRVLGLTE-----HEMFGLDGGEAIYQENLLAL 261

Query: 390 DRTCIAASARLHTIQWNRENSLAMT-FIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
           +    +          +      ++       A+  P  +          D      + +
Sbjct: 262 EGGT-SKEIESLLPSKDGHIYSVLSRVNRVVTADGRPYVVGSFSDISPLKDREKALIEAQ 320

Query: 449 IEVMQL----CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED-ILRKPFTVFLEQ 503
                L     +IL +   G+ I++ +  IL  N     ++  P++D    +PF   + +
Sbjct: 321 KHKEVLHRDIENILRSLPVGVLILDNDHRILYVNDEFYGIWELPLDDPFDGRPFIDVIRR 380

Query: 504 N----------TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553
           N          TP  +  +   +   +  + +E    G     K +   I   +   +  
Sbjct: 381 NYELGRYDGTQTPEEIYDFRKHLFETEEPEPIELGWAG----GKSV---IFDSRRISNDR 433

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
             LT  DI+  ++ + ++      A        + +   +H
Sbjct: 434 ILLTYADITAVREREKEIH----EARAALERLGEMMRDATH 470



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 47/437 (10%), Positives = 107/437 (24%), Gaps = 51/437 (11%)

Query: 50  EQSNFTDQNQESVSNTNYLDSENTFVFD-PIPRTVRFTWNIDAHGYLKEISEELPKTIGN 108
           +       +     + N LD   T + D P+   VR     D    L   ++      G+
Sbjct: 177 DAKPAAVSDAAWHESVNELDLLRTILEDLPVAAFVR-----DEKHRLVYANQYYETFSGH 231

Query: 109 YAFKMIGMRLCDVSDILHIDPNNHIGD----LLKRQNTWYGKTTLWPIEGTNLYVP---- 160
              +++G+   ++     +D    I       L+   +   ++ L   +G    V     
Sbjct: 232 SRSRVLGLTEHEM---FGLDGGEAIYQENLLALEGGTSKEIESLLPSKDGHIYSVLSRVN 288

Query: 161 --IDLAALP-----------IYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
             +     P           +  R +     +         V +       R       +
Sbjct: 289 RVVTADGRPYVVGSFSDISPLKDREKALIEAQ-----KHKEVLHRDIENILRSLPVGVLI 343

Query: 208 HEIKKGHSSVEKEKYDIFS-QQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
            +       V  E Y I+      P   R    V          D     E+        
Sbjct: 344 LDNDHRILYVNDEFYGIWELPLDDPFDGRPFIDVIRRNYELGRYDGTQTPEEIYDFRKHL 403

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS------LSAYFDEGEN 320
               E E          +       + N+                       A  +    
Sbjct: 404 FETEEPEPIELGWAGGKSVIFDSRRISNDRILLTYADITAVREREKEIHEARAALERLGE 463

Query: 321 LTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL-LDAPKLSDNN 379
           +  +     P    V   G +  +N +   + +  +       G +      A +   ++
Sbjct: 464 MMRDATHAMPQGLAVVQDGIIKMSNEALSDILQIPATYLEPGEGWIGMFEFCAARGDFHD 523

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
           A   ++    D   IAA   + T+                      +      +  +  +
Sbjct: 524 AAGEILQGWRDN--IAARLPISTVFHVGGERW------VNMDATVSKGQHWVALFTDVTE 575

Query: 440 TRINKRKMEIEVMQLCS 456
            +  + ++   + +  +
Sbjct: 576 LKSREEELRQLLSRAEA 592


>gi|83312147|ref|YP_422411.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82946988|dbj|BAE51852.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 454

 Score =  356 bits (914), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 117/437 (26%), Positives = 192/437 (43%), Gaps = 11/437 (2%)

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
           + + +   D         L       E  L  T  P         + P  G +       
Sbjct: 14  RALAVLGPDGLLAHVGETLSRALGTAEPRLIGT-RPGWVDGPDCTHTPLPGGQTLVELAP 72

Query: 442 INKRKMEIEVM---QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV-EDILRKPF 497
             + ++   +    ++ +I+E T + I +++ +G +L  NR      G      +L   F
Sbjct: 73  EAETRLRDSLRVNVEMRAIIENTFEFIGLLSPDGRLLDANRTALAFIGLDSLAPVLGMHF 132

Query: 498 TVFLEQNTPSVMNHYLT-EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556
                          L   I      + +   T     +  +  +   +K +P      L
Sbjct: 133 AETPWWEHSPEERAILRDGISRAAKGEFVRFETTHVDADGGIAYVDFSVKPVPDHEGNIL 192

Query: 557 TM----HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
            +     DI++ K+ +  L  AK+ AE  +  KS FLA VSHE+RTPL A+IGFSE I  
Sbjct: 193 FLVPEGRDITQRKRAEAALVAAKQEAEAANRAKSQFLATVSHELRTPLNAVIGFSEAILA 252

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
              GP    R +EY + I  +G  +  ++ D+LD+S+IE+G+  L  E     E V  A 
Sbjct: 253 GATGPASLERCVEYMDLIHSAGQHLRALIEDILDVSRIEAGRTELDEEEADPAELVRAAA 312

Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
            L++  A    +      A ++PR+  D R ++Q+ LN+  NA+ FTP+GG++ IS  H 
Sbjct: 313 RLLEHKAVVTGVDFTVVIAPDLPRMRLDPRRIRQVLLNLAGNALKFTPAGGRVGISAEHV 372

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
               + L V DTG+G+      K  + F Q  +S   R +G+GLGL + +  V+A+ G  
Sbjct: 373 PEG-LALTVEDTGIGIAPEHHAKVWQAFYQADSSLSRRHQGSGLGLAIVRHFVEAHGGTV 431

Query: 793 YIFSTPAKGTLIEIIFP 809
            + S   KGT I ++ P
Sbjct: 432 SLASEAGKGTRITVLLP 448



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/232 (7%), Positives = 48/232 (20%), Gaps = 6/232 (2%)

Query: 242 SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301
           S         D L       L+    +   +               +       +     
Sbjct: 12  SPRALAVLGPDGLLAHVGETLSRALGTAEPRLIGTRPGWVDGPDCTHTPLPGGQTLVELA 71

Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIE 361
             +            E   +   T +       +   G L  AN + L      S+  + 
Sbjct: 72  PEAETRLRDSLRVNVEMRAIIENTFEFIG---LLSPDGRLLDANRTALAFIGLDSLAPVL 128

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                 T        +   ++  +   +    +                  + F      
Sbjct: 129 GMHFAETPWWEHSPEERAILRDGISRAAKGEFVRFETTHVD---ADGGIAYVDFSVKPVP 185

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
           +     +       +    +  +  +     +  +   A S  +A ++ E  
Sbjct: 186 DHEGNILFLVPEGRDITQRKRAEAALVAAKQEAEAANRAKSQFLATVSHELR 237



 Score = 47.7 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 30/278 (10%), Positives = 64/278 (23%), Gaps = 21/278 (7%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYA-FKMIGMRLCDVSDILHIDPNNHIGDLL------ 137
           F   +   G L + +      IG  +   ++GM   +               L       
Sbjct: 98  FIGLLSPDGRLLDANRTALAFIGLDSLAPVLGMHFAE--TPWWEHSPEERAILRDGISRA 155

Query: 138 KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG 197
            +      +TT    +G   Y  +D +  P+             G            A  
Sbjct: 156 AKGEFVRFETTHVDADGGIAY--VDFSVKPVPDHEGNILFLVPEG--RDITQRKRAEAAL 211

Query: 198 KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD--DVLK 255
               ++    +  K    +    +              +    +         +  D++ 
Sbjct: 212 VAAKQEAEAANRAKSQFLATVSHELRTPLNAVIGFSEAILAGATGPASLERCVEYMDLIH 271

Query: 256 TEKYPLLTSEESSL--PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
           +    L    E  L     E   T    +               E    ++  +   + A
Sbjct: 272 SAGQHLRALIEDILDVSRIEAGRTELDEEEADPAELVRAAARLLEHKAVVTGVDFTVVIA 331

Query: 314 YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLL 351
                  L P  + +      +   GN     P+   +
Sbjct: 332 PDLPRMRLDPRRIRQ----VLLNLAGNALKFTPAGGRV 365


>gi|219849612|ref|YP_002464045.1| PAS/PAC sensor signal transduction histidine kinase [Chloroflexus
           aggregans DSM 9485]
 gi|219543871|gb|ACL25609.1| PAS/PAC sensor signal transduction histidine kinase [Chloroflexus
           aggregans DSM 9485]
          Length = 596

 Score =  356 bits (913), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 117/477 (24%), Positives = 204/477 (42%), Gaps = 20/477 (4%)

Query: 340 NLFYANPSFLLLTKY-KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398
            L Y      +LT     +  + +  G   +L    L  N A +   LYR+    +   A
Sbjct: 128 ELVYTAQGLWVLTGSNGPLWYVGVVNGYGMVLVGTLLMINQARRSRALYRAQALSLLVGA 187

Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458
            L    W           P    +  P     +G+       R     +        +I+
Sbjct: 188 LL---PWVTSILFVTGRSPILYIDTTPVAFALSGLTFNVAMRRFRVLDLLPAARD--AIV 242

Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
           +  SD I +++R   +L  N A  +LF      ++ +P TV         +         
Sbjct: 243 DQISDAIIVVDRHDRVLDLNPAA-QLFFADQTAVIGQPLTVVAPTWLYEQVRDRYEGQFE 301

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKK 576
           L+   +   +            LR    +            + DI+  KQ    L  AK+
Sbjct: 302 LNQPTSEGML---------TYDLRCTTLRDRRGMAMGRIFVLRDITLLKQAALALQKAKE 352

Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
            AE  +  KS FLA +SHE+RTPLTAI+G+SEVI++       N    +  + +  +G  
Sbjct: 353 AAEAANQAKSTFLAMMSHELRTPLTAILGYSEVIRDDLQIRGQNDLIAD-LDRVVLAGRH 411

Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696
           +L+++ND+L+++++E+  + ++ EP+ L E V+E +S     A   +  +  +   N+P 
Sbjct: 412 LLNLINDILELARLEANSLQVYPEPLHLAEIVTEVVSTSHGLAQRNQNTLTVTVEPNLPP 471

Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKA 756
           + AD   ++Q+ LN++ NA  FT  G QI +         + + V DTG+G+   +L   
Sbjct: 472 VKADPTRLRQVLLNLIGNACKFTEQG-QIHVRCYSPQPGIIQIDVSDTGIGIPPEQLASL 530

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
            +PF Q+ N    R  G GLGL +++ +  A  G+  + S P +G+   +  P+ DT
Sbjct: 531 FQPFMQVDNGTTRRYGGAGLGLAISRRLCQAMGGEIVVESEPQRGSTFSVRLPVADT 587


>gi|254563550|ref|YP_003070645.1| hybrid histidine kinase [Methylobacterium extorquens DM4]
 gi|254270828|emb|CAX26833.1| putative hybrid histidine kinase; Domains: two PAS, two PAC, His
           KinaseA, ATPase and two REC (CheY-like)
           [Methylobacterium extorquens DM4]
          Length = 803

 Score =  356 bits (913), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 100/501 (19%), Positives = 192/501 (38%), Gaps = 19/501 (3%)

Query: 317 EGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
                     D  P   ++    G L + N  +   T     +    A      L  P  
Sbjct: 24  PTMADFRNLADALPQLAWIAEADGTLVWYNRRWYDYTGTTPAEM---ADHGWRKLHHPDH 80

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
            +  A +      +  +          ++           +     N     +   G   
Sbjct: 81  LERAAERFASCIAAGESWQD----TFPLRGKDGRYRWFLSMAEPVRNAEGTVLRWYGTNT 136

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
           +  +TR+ +  +     +  ++++A++  I     +G ++    + +   G   E     
Sbjct: 137 DVTETRLAQDALGHSEQRFRALVDASAAVIWSTTAQGELMPPQPSWAAYTGQSDEAYQGW 196

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-- 553
            +   +  +  + +     E +        E        +E    + +    +       
Sbjct: 197 GWIDAIHPDDRARVAEVWAECVE--RVTVFEVEYRLRRHDEVWRDMEVRGVPVLAEDGSI 254

Query: 554 --YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
             +     DI+  K+ +  + HA+  AE  +  KS FLA +SHE+RTPL+A+IG+SE + 
Sbjct: 255 REWVGLNIDITARKEAEAAIEHARAAAEAANLAKSQFLANMSHELRTPLSAVIGYSE-ML 313

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
            +    LG    +     I+ S   +L ++ND+LDISKIE+G++ L  E   +   + + 
Sbjct: 314 GEELEDLGQAELLPDLRKIESSARHLLGLINDVLDISKIEAGRLTLAAETFDVVSLIEDV 373

Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
            +  Q    +KR   R  F  ++  +  D   ++Q  +N++ NA  F+  G +II+    
Sbjct: 374 TAATQSLITKKRNRFRLDFEGDLGAMHQDQLKLRQSLINLIGNAAKFSEDG-EIILGVRR 432

Query: 732 TSNE---EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                   +   V DTG+G+T  ++ +  + F Q   S   +  GTGLGL + +A V+  
Sbjct: 433 LREGGADWLSFSVSDTGIGLTQEQIGRLFERFSQADESTTRQFGGTGLGLAITRAFVERM 492

Query: 789 MGKFYIFSTPAKGTLIEIIFP 809
            G   + ST  +G    I  P
Sbjct: 493 GGTIGVESTFGEGATFTIRLP 513



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/264 (9%), Positives = 59/264 (22%), Gaps = 13/264 (4%)

Query: 55  TDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI 114
           T Q+ +       +     F         +  W  +A G L   +       G    +M 
Sbjct: 13  TVQDGKVPETGPTMAD---FRNLADALP-QLAWIAEADGTLVWYNRRWYDYTGTTPAEMA 68

Query: 115 GMRLCDVSDILHID-PNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNR 173
                 +    H++         +    +W     L   +G   Y      A P+ +   
Sbjct: 69  DHGWRKLHHPDHLERAAERFASCIAAGESWQDTFPLRGKDGR--YRWFLSMAEPVRNAEG 126

Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP--- 230
                R +G           +      +++F  L +           + ++   Q     
Sbjct: 127 TV--LRWYGTNTDVTETRLAQDALGHSEQRFRALVDASAAVIWSTTAQGELMPPQPSWAA 184

Query: 231 -PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYF 289
                    +     +     D     E +       +    +      +      +   
Sbjct: 185 YTGQSDEAYQGWGWIDAIHPDDRARVAEVWAECVERVTVFEVEYRLRRHDEVWRDMEVRG 244

Query: 290 GTLQNNSKESFEYLSHRNHPSLSA 313
             +        E++      +   
Sbjct: 245 VPVLAEDGSIREWVGLNIDITARK 268


>gi|158334015|ref|YP_001515187.1| two-component sensor histidine kinase [Acaryochloris marina
           MBIC11017]
 gi|158304256|gb|ABW25873.1| two-component sensor histidine kinase [Acaryochloris marina
           MBIC11017]
          Length = 714

 Score =  356 bits (913), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 96/583 (16%), Positives = 212/583 (36%), Gaps = 69/583 (11%)

Query: 275 FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF 334
            H  +  +  +      L+  + ++   L+      L A  ++        V+  P+   
Sbjct: 145 AHQCSAPREWQAFEVDLLKQLADQAGIALAQAK---LLADLNQAHQQLRFHVENSPLAVI 201

Query: 335 VYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA-----------------PKLS 376
            + H   +   +     +  +   + I        +                    P  +
Sbjct: 202 EWDHACRIQRWSAQAERIFGWSGEEVIGRGPDHWFIHTDDLHLFREHVLNLTGHPFPNYA 261

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTI-QWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
           + +  +    Y      I        +          ++      A Q  E   Q     
Sbjct: 262 NPDMERLTRNYTKAGDLIDCEWYSSALFDAEGNLVSILSMAQDVSARQQAEAALQQLNRE 321

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
            ++        ++    +  S+ EA  D I +++ +G+I   N  V +  GY   ++   
Sbjct: 322 LEMRVEQRTAALQESEQRFRSLFEAAPDFIYVLDTKGVIQHVNPVVIERSGYRKSELEGH 381

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-- 553
           PF       +  +      ++L+    +   +      K  K+L++    K +       
Sbjct: 382 PFINLFAPKSQVLCQQQFGDLLAQGSHR---QELEFMGKNGKILTVDCSFKVVKDPLGKT 438

Query: 554 -YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
              +   DIS+ K  +                K +F++ VSHE+RTPLT+I G  +++  
Sbjct: 439 SILVVQRDISDRKALE--------------RIKDEFISVVSHELRTPLTSIHGSIKLLAT 484

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
            + G L +    +  +  D++ + ++ +V+D+LD+ +IESG+  +        + ++ A 
Sbjct: 485 GQLGDLSDDGQ-QMLDIADQNTDRLVRLVSDVLDLQRIESGQAKISKHLCDAADLMTHAT 543

Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
             ++  A   ++ ++++    +  + A+   + Q   N++SNAI F+  GG + ++    
Sbjct: 544 DAMRSMAYHHQVTLKST--PLLTMVWANPDYMVQTLTNLISNAIKFSQPGGTVELAAELR 601

Query: 733 ------------------------SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
                                    + E+  +V D G G+   +LE   + F Q+  S  
Sbjct: 602 IEERRAKDSSSPPESHDTPFPITIKHTELWFQVIDQGQGIPADKLESVFERFQQVDASDA 661

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
               GTGLGL + + +V+ + GK +  S   +G+   +  P+ 
Sbjct: 662 REKGGTGLGLAICRKIVEQHGGKIWAESVLGQGSCFFVALPMS 704


>gi|134298576|ref|YP_001112072.1| multi-sensor signal transduction histidine kinase [Desulfotomaculum
           reducens MI-1]
 gi|134051276|gb|ABO49247.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfotomaculum reducens MI-1]
          Length = 453

 Score =  356 bits (913), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 86/367 (23%), Positives = 168/367 (45%), Gaps = 26/367 (7%)

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE-QNTPS 507
            E  +  +IL + +DG+  +++ G ++  N  V ++F     + L       +       
Sbjct: 110 EERNRARAILNSMADGVIALDKYGQVILINPVVEEIFKIKETNWLGNKIIKVIRNHELEE 169

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWK 565
           +    L  +     +  +       T + +L ++ +   K            + D++E +
Sbjct: 170 LFIRALHSM-----QPVMNSELQVLTPQPRLFNIHVTPLKGNNDEKIGVVGLITDVTERR 224

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + +                +++F+A VSHE+RTPLT+I GF E + +         R   
Sbjct: 225 KLE--------------RMRTEFVANVSHELRTPLTSINGFVETLLDGAIEEPIIAR--N 268

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           +   I   G  + +I++DLL +S++E  +  L+ +PV L E +   I++ +  A EK I 
Sbjct: 269 FLEIISAEGKRLANIIDDLLKLSRLEDRRTKLNKQPVDLAEVIGNTITMFEGRALEKNIQ 328

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           I T  +  +P +  D   + Q+ +N++ NAI +T +GG + IS     + EV + V DTG
Sbjct: 329 ITTEISPKLPLVPGDQGFLSQVMINLVDNAIKYTLTGGTVHISVKFNEH-EVTVTVSDTG 387

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+    + +  + F ++  ++     GTGLGL + K +++A+ GK  + S    G+   
Sbjct: 388 IGIPIESIPRVFERFYRVDKARSREMGGTGLGLSICKHIMEAHGGKIRVESDS-SGSQFS 446

Query: 806 IIFPLYD 812
              PL +
Sbjct: 447 FSLPLKE 453


>gi|124006365|ref|ZP_01691199.1| multi-sensor Hybrid Histidine Kinase [Microscilla marina ATCC 23134]
 gi|123988022|gb|EAY27693.1| multi-sensor Hybrid Histidine Kinase [Microscilla marina ATCC 23134]
          Length = 2102

 Score =  356 bits (913), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 137/747 (18%), Positives = 251/747 (33%), Gaps = 86/747 (11%)

Query: 96   KEISEELPKTIGNYAFKMIG--MRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIE 153
              +SE      G    + I    +  D+    H            ++N  +       ++
Sbjct: 1189 VFVSEGSTALTGITPEEFIEGKRKFNDIILPEHKTILWEEAQTALKENRPFEVEYPVMVD 1248

Query: 154  GTNLYVPIDLAALPIYSRNREFSGFRG-------FGIVHVNRVDNDPRALGKRLDKKFSH 206
            G   ++                +G  G        G +       + +     L      
Sbjct: 1249 GQIKWLW----------EKGRLTGQPGDVKEPMIEGFIADITDRKNAQEELLALKNDLER 1298

Query: 207  LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
                                 Q         +++S L +      + LK ++  L  + E
Sbjct: 1299 QV------------------TQRTKELRESNHQLSLLLQESQENAETLKAQEEELRQNVE 1340

Query: 267  SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
                                       N +   FE +       L   F           
Sbjct: 1341 QLNKTNVALERKQQEL-----------NEAHSRFELIHQGIGEGLWEIFVPQNKKLG--- 1386

Query: 327  DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
                          L + +P  L +    S D+             P+  +    +    
Sbjct: 1387 -----------KEALAWVSPKMLNILDITSPDNHIDL-TAWHNKIHPEEREEVIQRFETY 1434

Query: 387  YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
              +             +  N E             +++       G      + +  +  
Sbjct: 1435 INNPDWIQPYFVEYRMLMGNGE-YHWFRESGIVARDEYGNPSKVAGSLINIHEKKHAEEA 1493

Query: 447  MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED--ILRKPFTVFLEQN 504
            +     +L   LEAT DG+  I+        +    ++ G+  ++  +  + +   L   
Sbjct: 1494 LRESEARLQYALEATRDGLYDIDMLEDRTFASSNYYRMLGFEPDEFDVNGQVWRKLLHHE 1553

Query: 505  TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL-----RIIIKKLPFSSCYSLTMH 559
                +     +   L+             K+ +          +   ++  +     TM 
Sbjct: 1554 DKEKVITAFDQYKELNFP-FYSIEYRMQCKDGEYKWFLDRGKAVEFSQVGKAIRTIGTMT 1612

Query: 560  DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
            +I E K+ +  L  AK  AE  S  KS FLA +SH++RTPL  I+G+++++K ++     
Sbjct: 1613 NIDERKRYEEDLQSAKAAAEAASQAKSVFLASMSHDLRTPLNGILGYAQILKKEKNIT-- 1670

Query: 620  NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
             P   +    I+RSG  +L ++ND+L +SKIESGK+ L     +  + V   +S+ +++A
Sbjct: 1671 -PPQRDGLQIIERSGEQLLLLINDILHLSKIESGKLELENNDFNFADFVKNVVSITRVWA 1729

Query: 680  NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS----- 733
              K I  R      +P  +  D + ++QI  N+LSNAI FT  GG +    THT      
Sbjct: 1730 ENKNIDYRFESPAQLPYFVNGDEKRIRQILFNLLSNAIKFTDEGG-VTFRITHTPHPTKV 1788

Query: 734  -NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
             N   +  V DTG G+    + K  +PF Q+  S+  + EGTGLGL +   +V    G  
Sbjct: 1789 LNHIFVFEVEDTGTGIPKDTIAKIFEPFHQVRGSR-HQAEGTGLGLAICNRLVKLMDGSI 1847

Query: 793  YIFSTPAKGTLIEIIF--PLYDTSHPH 817
             + ST  KG+L ++    P+ ++  P 
Sbjct: 1848 QVESTLGKGSLFKLTIDMPVTNSELPQ 1874



 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 58/531 (10%), Positives = 141/531 (26%), Gaps = 50/531 (9%)

Query: 86   TWNIDAHG--YLKEISEELPKTIGNY-----AFKMIGMRLCDVSDILHIDPNNHIGDLLK 138
             + ++  G   L+  ++ + +            ++IG+++ +         ++ +   ++
Sbjct: 648  LFKVEEEGMPVLESTNQHVIEMFAFRGEVITPAELIGVKIDEYYKRAFYQDDDKLHREIQ 707

Query: 139  RQNTWYGK------TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192
            R      K      T    ++G    +  +    PI +   + +      I      +  
Sbjct: 708  RVKRVLKKKQEVLFTDRLDLDG-GKVLFRENRLTPIINEQGDCTHL--LIISRDITKNRI 764

Query: 193  PRALGKRLDKKFSHLHEIKKGHSS----------VEKEKYDIFSQQ--SPPPHLRMKNKV 240
             +A  K  + +     E                 +  + Y I   Q    PP     +  
Sbjct: 765  AKAALKESETRLKLAIEAAHQGLWDWDIRANENYLSPDFYRILGYQYYENPPIPFKPDYD 824

Query: 241  SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ-NNSKES 299
              L+  +      +   +   L  E      +      + +          +Q N     
Sbjct: 825  QWLSHVHPDDRPKVANFQQRYLDEEIPKYEVELRIRCKDGSYKWVASKGQIVQKNRLGIP 884

Query: 300  FEYLSHRNHPSLSAYFDEGENLTPE----TVDKCPIPF-FVYSHGNLFYANPSFLLLTKY 354
               +   N  +   + DE    + E    TV   P+    +    N    N     +T Y
Sbjct: 885  IRMVGIINDITERKHTDELLRRSEEQMKMTVQNVPVMINALDEKLNFVMWNAECERITGY 944

Query: 355  KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
             S + I        L+   K       +  ++ + D      +  +  I  +    +   
Sbjct: 945  SSQEIIGNRHVFQMLIPDDKYRKK-VYRQWLVRKGDFK----NWEVAIICKDGTEKIISW 999

Query: 415  FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII 474
                +            G+  +  D       +      L   + A   G+   + +   
Sbjct: 1000 TQNSKHYPIAG--WAHWGVGVDVTDRNKALYALRDSEETLKLAMNAAKQGLWDWDTKNN- 1056

Query: 475  LSTNRAVSKLFGYPVED--ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
               +     L GY   +     + +   +  +    + +     L+ +            
Sbjct: 1057 KYNSFQYYHLLGYRPNEFEATHENWVSLIHPDDVQNVLNTQQRYLTAETP-DYSLEYRMR 1115

Query: 533  TKEEKLLSLRI---IIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIA 578
             K+            + +            + DISE KQ    L  +++  
Sbjct: 1116 AKKGTYKWFFAKGKTVARDEQGRPERMIGIISDISELKQATQSLRESERQL 1166



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/396 (9%), Positives = 108/396 (27%), Gaps = 11/396 (2%)

Query: 201  DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
            ++    L    +    +   + ++ +          +    +  +        ++  K  
Sbjct: 653  EEGMPVLESTNQHVIEMFAFRGEVITPAELIGVKIDEYYKRAFYQDDDKLHREIQRVKRV 712

Query: 261  LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS----LSAYFD 316
            L   +E    ++ D          ++     + N   +    L      +      A   
Sbjct: 713  LKKKQEVLFTDRLDLDG--GKVLFRENRLTPIINEQGDCTHLLIISRDITKNRIAKAALK 770

Query: 317  EGENLTPETVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSVD--DIEIAGGLSTLLDAP 373
            E E      ++      + +       Y +P F  +  Y+  +   I         L   
Sbjct: 771  ESETRLKLAIEAAHQGLWDWDIRANENYLSPDFYRILGYQYYENPPIPFKPDYDQWLSHV 830

Query: 374  KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
               D   +        D         L     +       +     + N+    +   GI
Sbjct: 831  HPDDRPKVANFQQRYLDEEIPKYEVELRIRCKDGSYKWVASKGQIVQKNRLGIPIRMVGI 890

Query: 434  EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
              +  + +     +     Q+   ++     I  ++ +   +  N    ++ GY  ++I+
Sbjct: 891  INDITERKHTDELLRRSEEQMKMTVQNVPVMINALDEKLNFVMWNAECERITGYSSQEII 950

Query: 494  R-KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
              +     L  +       Y   ++     +  E   +     EK++S     K  P + 
Sbjct: 951  GNRHVFQMLIPDDKYRKKVYRQWLVRKGDFKNWEVAIICKDGTEKIISWTQNSKHYPIAG 1010

Query: 553  -CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
              +     D+++  +    L  +++  +   +    
Sbjct: 1011 WAHWGVGVDVTDRNKALYALRDSEETLKLAMNAAKQ 1046



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/383 (7%), Positives = 91/383 (23%), Gaps = 26/383 (6%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIG--MRLCDVSDILHIDPNNHIGDLLKRQNTWYGK 146
            +D        + E  +  G  + ++IG       +          +   L+++ +    +
Sbjct: 925  LDEKLNFVMWNAECERITGYSSQEIIGNRHVFQMLIPDDKYRKKVYRQWLVRKGDFKNWE 984

Query: 147  TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
              +   +GT   +          S++   +G+  +G+       N      +  ++    
Sbjct: 985  VAIICKDGTEKIISWTQN-----SKHYPIAGWAHWGVGVDVTDRNKALYALRDSEETLKL 1039

Query: 207  LHEIKKGHSSVEKE------KYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
                 K               +  +      P+       + ++  +      +   +  
Sbjct: 1040 AMNAAKQGLWDWDTKNNKYNSFQYYHLLGYRPNEFEATHENWVSLIHPDDVQNVLNTQQR 1099

Query: 261  LLTSEESSLPEQEDFHTINLNQYT-KKQYFGTLQNNSKESFEYLSHRNHPSLSAYF---- 315
             LT+E      +               +     ++        +   +  S         
Sbjct: 1100 YLTAETPDYSLEYRMRAKKGTYKWFFAKGKTVARDEQGRPERMIGIISDISELKQATQSL 1159

Query: 316  DEGENLTPETVDKCPIPFFVYSHGN---LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
             E E      +   P   +   +     + + +     LT     + IE     + ++  
Sbjct: 1160 RESERQLSTLMSNLPGMVYRCHNNQERPMVFVSEGSTALTGITPEEFIEGKRKFNDIILP 1219

Query: 373  PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
                     +       +          + +  + +                 +     G
Sbjct: 1220 E--HKTILWEEAQTALKENRPFEVE---YPVMVDGQIKWLWEKGRLTGQPGDVKEPMIEG 1274

Query: 433  IEPEDVDTRINKRKMEIEVMQLC 455
               +  D +  + ++      L 
Sbjct: 1275 FIADITDRKNAQEELLALKNDLE 1297


>gi|171059399|ref|YP_001791748.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
 gi|170776844|gb|ACB34983.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
          Length = 1255

 Score =  356 bits (913), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 118/696 (16%), Positives = 239/696 (34%), Gaps = 41/696 (5%)

Query: 128 DPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187
           +P       L+  +       + P+ G    + + LAA+     + +             
Sbjct: 151 EPLRPTLAALEFHDPDRFDPEVLPLLG---MLALQLAAVARREADLQL--------ARQR 199

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247
                  A+      + + + +       V     +I          R   +  +     
Sbjct: 200 DEQLAQVAMLASRTGRSTVITDQNGRIEWVHPAFAEITGHLPLEVQGRPLWEALARDLTR 259

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
           +     L+T            +  +          Y  +     + + +    +++   +
Sbjct: 260 SDAAAQLRTLFAGSGAFRHEFVARRGQACAEPGQPYWLEVDAAQVIDETTGRLQFVCLCS 319

Query: 308 HPSLSAYFDEGENLTPETV----DKCPIPFFVYSHGN--LFYANPSFLLLTKYKSVDDIE 361
             S     + G +   E +    +  PI   V       +   N    +           
Sbjct: 320 DISSRKAHESGNDEQRELLAALTENLPISLLVLDAQRMQVLSLNRHAQIEFGVSPT---P 376

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
              GL  +L A       A    +L R      A                 ++       
Sbjct: 377 GNSGLDDMLGAGLHERIRAELDEVLQR----PGAVEHEFVWPTVEGRR--VISARHVAVQ 430

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRA 480
           ++            +    R ++ ++     +   ++E   +G+ I N            
Sbjct: 431 DRHGPPRVVITQLRDVTRQRRDELRLRESETRYRELVETIDEGVFISNPARDQWYYIGPR 490

Query: 481 VSKLFGYPVEDILRKP--FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
           + ++ G  V D    P      +  +   ++        +L+      +I         L
Sbjct: 491 MYQMLGLKVADRREHPDLLQSLVLPDDARLLAQQREHEEALEATDVTLRIRHPGRGLRWL 550

Query: 539 LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
                        +     + D+++ ++   +L  A+ +AE  S  KS F+A +SHEIRT
Sbjct: 551 RQRTRTRVLPGGETRVYGLLDDVTDERERALQLQAARDVAEAASQAKSQFMASMSHEIRT 610

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
           P+  I+G +E++   R     + R   +A  + RSG  +L+I+ND+LD SKIE+G++ L 
Sbjct: 611 PMNGILGMTELLLGTRL----DDRQRRFAQAVYRSGENLLEIINDVLDFSKIEAGRLELA 666

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIH 717
               +L   + + + L+   A+EK + +      ++P  +LAD   ++Q+  N+++NA+ 
Sbjct: 667 PTDFNLRTLIEDTLDLLAPRAHEKGLELSFRETGDVPANVLADPLRLRQVLTNLVANAVK 726

Query: 718 FTPSGGQIIISTTHTSN------EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           FT  G ++ +               +  RVRDTG+GM    L +    F Q       R 
Sbjct: 727 FTEHG-EVTVDLRFLPRPRAGAPAMLEFRVRDTGIGMAAELLPRLFTAFTQAHGGMARRY 785

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
            GTGLGL +++ +V+   G+  + S P  G+     
Sbjct: 786 GGTGLGLAISRQLVELMGGQIDVVSQPGVGSEFRFT 821



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/402 (11%), Positives = 101/402 (25%), Gaps = 31/402 (7%)

Query: 69  DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL--H 126
           D +   V     RT R T   D +G ++ +     +  G+   ++ G  L +        
Sbjct: 200 DEQLAQVAMLASRTGRSTVITDQNGRIEWVHPAFAEITGHLPLEVQGRPLWEALARDLTR 259

Query: 127 IDPNNHIGDLLKRQNTWYGKTTLWP---IEGTNLYVPIDLAALPIYSRNREFSGFRGF-G 182
            D    +  L      +  +                 +++ A  +       +G   F  
Sbjct: 260 SDAAAQLRTLFAGSGAFRHEFVARRGQACAEPGQPYWLEVDAAQVIDET---TGRLQFVC 316

Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEK----------YDIFSQQSPPP 232
           +           +      +  + L E       V   +            I    SP P
Sbjct: 317 LCSDISSRKAHESGNDEQRELLAALTENLPISLLVLDAQRMQVLSLNRHAQIEFGVSPTP 376

Query: 233 HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL 292
                + +     +   + ++ +  + P     E   P  E    I+      +   G  
Sbjct: 377 GNSGLDDMLGAGLHERIRAELDEVLQRPGAVEHEFVWPTVEGRRVISARHVAVQDRHGPP 436

Query: 293 QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLF--YANPSFLL 350
           +       +               E E    E V+      F+ +       Y  P    
Sbjct: 437 R---VVITQLRDVTRQRRDELRLRESETRYRELVETIDEGVFISNPARDQWYYIGPRMYQ 493

Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
           +   K  D  E    L +L+           + +   R     + A+     I+      
Sbjct: 494 MLGLKVADRREHPDLLQSLVLPDD------ARLLAQQREHEEALEATDVTLRIRHPGRGL 547

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
             +      +     E     G+  +  D R    +++    
Sbjct: 548 RWLRQRTRTRVLPGGE-TRVYGLLDDVTDERERALQLQAARD 588


>gi|254444992|ref|ZP_05058468.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
 gi|198259300|gb|EDY83608.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
          Length = 777

 Score =  356 bits (913), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 107/585 (18%), Positives = 207/585 (35%), Gaps = 24/585 (4%)

Query: 233 HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTI--NLNQYTKKQYFG 290
                     L       D  +   +          + +++    +              
Sbjct: 54  LRVSPRTEVILVSGEPTLDTAMAAVRAGANDYIVKPVTKEKITRVVGRAAKLKLNSDDLM 113

Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFL 349
            L+  +    E L         +   E E    +  +       +    GN+   NP+  
Sbjct: 114 RLREENLIYQEKLERLVEERTQSLL-ESETKYRDVFEGALFMIHILDTEGNILNVNPAMC 172

Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
              +++  + + I+      L      ++  I  V   R+          +  I  + + 
Sbjct: 173 NTLEFEKGELLGIS------LLEIVSEEDREIAEVNFERARLGESVKEYEVKLISKSGKL 226

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469
                        Q  + +   G   ++   +  + ++  E + + ++++   D I   +
Sbjct: 227 VHV--RAAANPIVQDGKVVSIQGNLIDETKRKTAEAELADERVLMRTLMDNIPDSIYFKD 284

Query: 470 REGIILSTNRAVSKLFGYP-VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528
            E   L  +R  S LFGY   E++         + +           I+       ++K 
Sbjct: 285 LESRFLQVSRFQSNLFGYERPEELCGLSDFDIFQGDMARKKFEDEQSIIRTGTP-IIDKE 343

Query: 529 TLGSTKEEKLLSLRIIIKKLPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESSH 584
                   +   +      L   S           DI+  K+ +  LS A + A + S  
Sbjct: 344 EKEKFLNGEAQYVSTTKMPLRSVSGEVIGTFGVSRDITNRKRLEQNLSFALERALEASRL 403

Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
           KS+F+A +SHE+RTP+  I+G ++++         +    + A  I + G  ++ I++D+
Sbjct: 404 KSEFIATMSHELRTPMNGILGMADILLLTEL----SESQKDSAKLIKKCGQNLMSIISDI 459

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRS 703
           LD SKIE+    L  EP+ +   V+E ++  +  A  K I +R     +   I   D + 
Sbjct: 460 LDFSKIETRNFQLEVEPLEIQLIVNETLAFFRPKAESKGISLRCEIDEHCSDIFYGDSKR 519

Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
           ++Q+  N++ NAI FT  G  + +         + + V DTGVG+      K  + F Q 
Sbjct: 520 IRQVLTNLVGNAIKFTEEG-YVRVRADFLGEGRMRIEVEDTGVGIDEVFQSKVFQAFTQE 578

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
             S   R  GTGLGL + K +V+   G     S    G+      
Sbjct: 579 DGSDSRRYGGTGLGLAITKQLVELMGGLIDFDSQVGVGSRFWFEI 623



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/234 (11%), Positives = 77/234 (32%), Gaps = 8/234 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID-PNNHIGDLLKRQNTWYGKT 147
           +D  G +  ++  +  T+     +++G+ L ++      +    +       ++    + 
Sbjct: 158 LDTEGNILNVNPAMCNTLEFEKGELLGISLLEIVSEEDREIAEVNFERARLGESVKEYEV 217

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR-ALGKRLDKKFSH 206
            L    G  ++  +  AA PI  ++ +    +G  I    R   +   A  + L +    
Sbjct: 218 KLISKSGKLVH--VRAAANPIV-QDGKVVSIQGNLIDETKRKTAEAELADERVLMRTLMD 274

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK---TEKYPLLT 263
                     +E     +   QS         ++  L+++   + D+ +    ++  ++ 
Sbjct: 275 NIPDSIYFKDLESRFLQVSRFQSNLFGYERPEELCGLSDFDIFQGDMARKKFEDEQSIIR 334

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
           +    + ++E    +N            L++ S E           +     ++
Sbjct: 335 TGTPIIDKEEKEKFLNGEAQYVSTTKMPLRSVSGEVIGTFGVSRDITNRKRLEQ 388



 Score = 43.5 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 21/178 (11%), Positives = 43/178 (24%), Gaps = 8/178 (4%)

Query: 51  QSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGN-Y 109
           Q N  D+ +   +     D                 +  D      ++S       G   
Sbjct: 246 QGNLIDETKRKTAEAELADERVLMRTLMDNIPDSIYFK-DLESRFLQVSRFQSNLFGYER 304

Query: 110 AFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY--GKTTLWPIEGTNLYVPIDLAALP 167
             ++ G+   D+               + R  T     +     + G   YV      +P
Sbjct: 305 PEELCGLSDFDIFQGDMARKKFEDEQSIIRTGTPIIDKEEKEKFLNGEAQYVSTT--KMP 362

Query: 168 IYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF 225
           + S + E  G   FG+                  ++      +K    +    +    
Sbjct: 363 LRSVSGEVIGT--FGVSRDITNRKRLEQNLSFALERALEASRLKSEFIATMSHELRTP 418


>gi|89100386|ref|ZP_01173250.1| sensory box histidine kinase PhoR [Bacillus sp. NRRL B-14911]
 gi|89084905|gb|EAR64042.1| sensory box histidine kinase PhoR [Bacillus sp. NRRL B-14911]
          Length = 587

 Score =  356 bits (913), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 89/366 (24%), Positives = 172/366 (46%), Gaps = 23/366 (6%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           +  E++  +L +++E    G+ +I+  G I   N+   ++FG      +   +   +   
Sbjct: 238 KAQEMQQDRLGTLIENMGSGLILIDSRGYISLVNKPYYEIFGLEPHGYVGNLYYEVI--- 294

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDIS 562
               +   + +I   + ++T +++ +    E K   +  +             L  HDI+
Sbjct: 295 EQKEITDLVEDIFMTE-QKTRKQMVIPVAIERKHFEVYGVPIIGTNDVWKGILLVFHDIT 353

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E K+ +                + DF+A VSHE++TP+T+I GFSE + +          
Sbjct: 354 ELKKLE--------------QMRKDFVANVSHELKTPITSIKGFSETLLDGAMH--DQAA 397

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
              + + I +  + +  ++ DLLD+SK E     L  + + L   + E ++++   A +K
Sbjct: 398 LSAFLDIILKESDRLQSLIQDLLDLSKTEQQGFRLSVQEMDLSSLLGECLAILNGKAKDK 457

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
            I I  S  +    I  D   +KQ+ +N+L+NAI +TP GG+I +S      ++V + V+
Sbjct: 458 AIDIEYSDQSGNGWIKGDPHRLKQVFINLLTNAITYTPQGGKISVSLE-EKEDKVQVEVK 516

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG+G+   E+ +  + F +I  ++     GTGLGL + K +V+A+ G   + S   KGT
Sbjct: 517 DTGMGIDQDEIPRIFERFYRIDKARSRNSGGTGLGLAIVKHLVEAHKGSITVESEVGKGT 576

Query: 803 LIEIIF 808
             ++  
Sbjct: 577 TFKVQL 582


>gi|83643679|ref|YP_432114.1| PAS/PAC domain-containing protein [Hahella chejuensis KCTC 2396]
 gi|83631722|gb|ABC27689.1| FOG: PAS/PAC domain [Hahella chejuensis KCTC 2396]
          Length = 1437

 Score =  356 bits (913), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 106/563 (18%), Positives = 207/563 (36%), Gaps = 31/563 (5%)

Query: 270  PEQEDFHTINLNQYTKKQYFGTLQNN-SKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
            P +     I     T +     +              R   + +A       L    ++ 
Sbjct: 456  PIRNADGEIVGAAKTIRDISRQISIENQIRELNASLERQVEARTAEIRRYLALQQAILNN 515

Query: 329  CPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIA-GGLSTLLDAPKLSDNNAIKPVML 386
                       G +   NP+   +  Y + + +      +  L +          + +  
Sbjct: 516  AGNAIIATDLEGLITLFNPAAERMLGYTADEMVGKRTPAVFHLREEVAARAQEFSEELGE 575

Query: 387  YRSDR---------TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
              +             +        ++ +      +     E  ++        G+  + 
Sbjct: 576  RLAPGFEVFIVKTKRGLPNEHEWTYVRKDGAR-FPVQLSVTELKDENNRASGYLGVATDI 634

Query: 438  VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE----DIL 493
                 ++R +     QL    E    GI   +     L+ NR + +++  P E     + 
Sbjct: 635  SRQVQDRRNLMSMRDQLLKAAEVAELGIWTWDLVSDTLTWNRQMFEIYQVPYELNNAGLS 694

Query: 494  RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553
             + +   L     +     L   L+ +     + I        ++  ++           
Sbjct: 695  HRHWRNALHPEDEAATTAKLEAALAGE--GVYDPIYRIVRPSGEVRYVQAAAVVEFNDLG 752

Query: 554  ----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                      DI+E ++ + +L  AK +A+  S  KS+FLA +SHEIRTP+ AI+G   +
Sbjct: 753  KPILVLGVNRDITEQREYEQRLREAKAMADNASKAKSEFLANMSHEIRTPMNAILGMVNL 812

Query: 610  IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
            +K          R  +Y +  + S   +L I+ND+LD SKIE+GK+ L  EP SLD+ + 
Sbjct: 813  LKRTNL----EERQQDYVHKAESSARALLGILNDILDFSKIEAGKLTLDVEPCSLDKLLQ 868

Query: 670  EAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIII 727
            +   ++     +K + +       IP  +  D   ++QI +N+  NA+ FT  G  +I +
Sbjct: 869  DVGVIITANLGDKPLEVLFDIDPKIPDWLELDGLRLQQILINLAGNAVKFTEQGEVEITV 928

Query: 728  STTHTSNEEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
                   + ++    VRDTG+G++  +L++  + F Q   S   R  G GLGL + + +V
Sbjct: 929  RLKSEEEDRLVLSFSVRDTGIGISAEQLQRIFEGFTQAEASTARRFGGAGLGLAICRRLV 988

Query: 786  DANMGKFYIFSTPAKGTLIEIIF 808
                G+    S   +G++     
Sbjct: 989  RLMGGEIAAESEEGEGSVFRFSI 1011



 Score =  114 bits (285), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 45/420 (10%), Positives = 101/420 (24%), Gaps = 49/420 (11%)

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT-EKYPLLTSE 265
           L                   Q              S++ Y A     L   ++ PL    
Sbjct: 243 LIHTNSNKVFGFDLGRRFRWQDEFKTVQVESELFRSMSLYEAEDGAQLAASQEVPLQEGL 302

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP-----SLSAYFDEGEN 320
              +      +     +    Q    +          +    +              G+ 
Sbjct: 303 PERVLRLYITYPQEAAEKRVGQAVSNIMLALLGGMAVVGGFLYLYWLNMRQRQLVSSGQA 362

Query: 321 LTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
                V+            G +   N     +  Y   + I         +    +    
Sbjct: 363 RMAAIVESAQDAVLGMDLDGVVTDWNRGAERMFGYPRDEAIG------RFVQKLIVPGER 416

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED-- 437
             +   + R               +     ++ ++       N   E +       +   
Sbjct: 417 VAEETSILRMIEDGGPVRPFNTQRKCKDGRTVEVSVSVSPIRNADGEIVGAAKTIRDISR 476

Query: 438 --------------VDTRINKRKMEIEV--MQLCSILEATSDGIAIINREGIILSTNRAV 481
                         ++ ++  R  EI        +IL    + I   + EG+I   N A 
Sbjct: 477 QISIENQIRELNASLERQVEARTAEIRRYLALQQAILNNAGNAIIATDLEGLITLFNPAA 536

Query: 482 SKLFGYPVEDILRK--PFTVFLEQNTPSVMNHYLTEI------------LSLDLRQTLEK 527
            ++ GY  ++++ K  P    L +   +    +  E+            +        E 
Sbjct: 537 ERMLGYTADEMVGKRTPAVFHLREEVAARAQEFSEELGERLAPGFEVFIVKTKRGLPNEH 596

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
                 K+     +++ + +L   +     Y     DIS   Q++  L   +    K + 
Sbjct: 597 EWTYVRKDGARFPVQLSVTELKDENNRASGYLGVATDISRQVQDRRNLMSMRDQLLKAAE 656



 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 56/475 (11%), Positives = 131/475 (27%), Gaps = 32/475 (6%)

Query: 130 NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYS--RNREFSGF--------- 178
              +  L++ Q  +  +     +EG +      L   PI    R  E  G+         
Sbjct: 39  YTEVEALMEGQVAFRSEKITQRLEGLSHDARFLLFTPPIQGIVRATENDGYDVREDSSLS 98

Query: 179 ---RGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR 235
              R    +    +   P     RL     +  EI +     +  +     +  P     
Sbjct: 99  LWRRRLNTIFSGYLVTHPEVTQVRLIGVADNGKEIVRVERIGQLPEIIADDELQPKAQRD 158

Query: 236 MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN 295
              +   +     +  D+    +Y ++       P             +    FG L  N
Sbjct: 159 YFQEAIRIPPGSLYVSDLNLNREYDMVQ-----WPHVPTLRMATPVISSAGNTFGILVIN 213

Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYK 355
              SF                         +       F +  G        F    ++K
Sbjct: 214 IDASFMLDDLTAEVPQGYRVYLTNQNGDFLIHTNSNKVFGFDLGR------RFRWQDEFK 267

Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
           +V          +L +A   +   A + V L   +           T             
Sbjct: 268 TVQVESELFRSMSLYEAEDGAQLAASQEVPL--QEGLPERVLRLYITYPQEAAEKRVGQA 325

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
           +               G           ++ +     ++ +I+E+  D +  ++ +G++ 
Sbjct: 326 VSNIMLALLGGMAVVGGFLYLYWLNMRQRQLVSSGQARMAAIVESAQDAVLGMDLDGVVT 385

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
             NR   ++FGYP ++ + +     +           +  ++           T    K+
Sbjct: 386 DWNRGAERMFGYPRDEAIGRFVQKLIVPGERVAEETSILRMIEDGGP-VRPFNTQRKCKD 444

Query: 536 EKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
            + + + + +  +  +    +    T+ DIS     +N++       E++   ++
Sbjct: 445 GRTVEVSVSVSPIRNADGEIVGAAKTIRDISRQISIENQIRELNASLERQVEART 499



 Score = 88.9 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 39/407 (9%), Positives = 107/407 (26%), Gaps = 48/407 (11%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN-HIGDLLKRQNTWY-GK 146
           +D  G + + +    +  G    + IG  +  +            I  +++         
Sbjct: 378 MDLDGVVTDWNRGAERMFGYPRDEAIGRFVQKLIVPGERVAEETSILRMIEDGGPVRPFN 437

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF--GIVHVNRVDNDPRALGKRLDKKF 204
           T     +G  + V + ++  PI + + E  G       I     ++N  R L   L+++ 
Sbjct: 438 TQRKCKDGRTVEVSVSVS--PIRNADGEIVGAAKTIRDISRQISIENQIRELNASLERQV 495

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR-----------------MKNKVSSLTEYY 247
                  + + ++++   +          L                      V   T   
Sbjct: 496 EARTAEIRRYLALQQAILNNAGNAIIATDLEGLITLFNPAAERMLGYTADEMVGKRTPAV 555

Query: 248 AHKDDVLKTEKYPLLTS-EESSLPEQEDF----------------HTINLNQYTKKQYFG 290
            H  + +            E   P  E F                   +  ++  +    
Sbjct: 556 FHLREEVAARAQEFSEELGERLAPGFEVFIVKTKRGLPNEHEWTYVRKDGARFPVQLSVT 615

Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDE----GENLTPETVDKCPIPFFVYSH-GNLFYAN 345
            L++ +  +  YL      S             +   +  +   +  + +    +    N
Sbjct: 616 ELKDENNRASGYLGVATDISRQVQDRRNLMSMRDQLLKAAEVAELGIWTWDLVSDTLTWN 675

Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405
                + +     ++  AG            ++ A     L  +             ++ 
Sbjct: 676 RQMFEIYQVPY--ELNNAGLSHRHWRNALHPEDEAATTAKLEAALAGEGVYDPIYRIVRP 733

Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
           + E    +      + N   + +   G+  +  + R  ++++     
Sbjct: 734 SGE-VRYVQAAAVVEFNDLGKPILVLGVNRDITEQREYEQRLREAKA 779



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/269 (10%), Positives = 71/269 (26%), Gaps = 29/269 (10%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGM------RLCDVSDILHIDPNNHIGDLLK---- 138
            D  G +   +    + +G  A +M+G        L +       + +  +G+ L     
Sbjct: 523 TDLEGLITLFNPAAERMLGYTADEMVGKRTPAVFHLREEVAARAQEFSEELGERLAPGFE 582

Query: 139 -------RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN 191
                  R      + T    +G     P+ L+   +   N   SG+ G  +        
Sbjct: 583 VFIVKTKRGLPNEHEWTYVRKDG--ARFPVQLSVTELKDENNRASGYLG--VATDISRQV 638

Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS-PPPHLRMKNKVSSLTEYYAHK 250
             R     +  +     E+ +          D  +         ++  ++++    + H 
Sbjct: 639 QDRRNLMSMRDQLLKAAEVAELGIWTWDLVSDTLTWNRQMFEIYQVPYELNNAGLSHRHW 698

Query: 251 DDVLKTEKYPLLTSEESSLPEQE-------DFHTINLNQYTKKQYFGTLQNNSKESFEYL 303
            + L  E     T++  +    E            +      +       N+  +    L
Sbjct: 699 RNALHPEDEAATTAKLEAALAGEGVYDPIYRIVRPSGEVRYVQAAAVVEFNDLGKPILVL 758

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIP 332
                 +    +++         D     
Sbjct: 759 GVNRDITEQREYEQRLREAKAMADNASKA 787


>gi|332306726|ref|YP_004434577.1| multi-sensor hybrid histidine kinase [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332174055|gb|AEE23309.1| multi-sensor hybrid histidine kinase [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 1115

 Score =  356 bits (913), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 109/501 (21%), Positives = 202/501 (40%), Gaps = 18/501 (3%)

Query: 319 ENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
           E     T++        +   G +  AN +   L  +   + I     +  L+   ++S+
Sbjct: 272 EARLRATINTSVDGVLGFDRHGIIESANDALCELLGWDDAELIGQ--DVRVLMPNERISE 329

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
            N    + L        +        Q +      +         +  +         + 
Sbjct: 330 FNQYLEMRLNGIHPDKTSNGRDTTICQKDGR---LIPIRLAIGFVELGQESNFVAFISDL 386

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAI--INREGI-ILSTNRAVSKLFGYPVEDILR 494
                 +R +     Q  S++     GIA   ++ E   ++  + A+  + GYP  D + 
Sbjct: 387 RYRVEMERALRQSEAQFRSLISNIP-GIAYRCLDNEERPMVFISDAIESISGYPASDYVG 445

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC- 553
            P   +  ++            ++      +E     + +E + L       +   +   
Sbjct: 446 NPPKRYFHEHVHPDDIEETVAKVNGQHLFKVEYRIYNAKREIRWLLGYGTHAENTETGEK 505

Query: 554 -YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
                + DI+E K+ +  L  AK  AE+ +S ++ FLA +SHEIRTP+ A+IGFS+++ +
Sbjct: 506 WLDGFIMDITERKEMEQSLLIAKDKAEQAASSRAAFLANMSHEIRTPMNAVIGFSDILLD 565

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
             F         ++   I++S   +L ++ND+LD +K++ GK        SL E +   +
Sbjct: 566 DVF----EAEQRKHLTTINQSAKSLLHLLNDILDSAKLDKGKFEFEMRDFSLIEEIDAVV 621

Query: 673 SLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
           S + L AN+K + +  S A  +          ++Q+  N++ NAI FT  GG + I    
Sbjct: 622 STLWLQANKKELYLNVSVAPEVAGAFHGAPDRIRQVLTNLIGNAIKFTVLGG-VNIKVGV 680

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
             +  +   + DTG+GMT  +L      FGQ   S   R  GTGLG  ++K +++   GK
Sbjct: 681 KPSGCIEFAIIDTGIGMTKEQLNLVFDAFGQADASMSRRFGGTGLGTTISKQLIELMGGK 740

Query: 792 FYIFSTPAKGTLIEIIFPLYD 812
               ST  +G+      PL  
Sbjct: 741 ISATSTYGEGSCFSFTLPLAP 761



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 63/141 (44%), Gaps = 4/141 (2%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           + + R+ +    +L + +  + DG+   +R GII S N A+ +L G+   +++ +   V 
Sbjct: 262 KESTRRAKFNEARLRATINTSVDGVLGFDRHGIIESANDALCELLGWDDAELIGQDVRVL 321

Query: 501 LEQNTPSVMNHYLTEILS--LDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCYSL 556
           +     S  N YL   L+     + +  + T    K+ +L+ +R+ I   +L   S +  
Sbjct: 322 MPNERISEFNQYLEMRLNGIHPDKTSNGRDTTICQKDGRLIPIRLAIGFVELGQESNFVA 381

Query: 557 TMHDISEWKQEKNKLSHAKKI 577
            + D+    + +  L  ++  
Sbjct: 382 FISDLRYRVEMERALRQSEAQ 402



 Score = 38.9 bits (89), Expect = 3.6,   Method: Composition-based stats.
 Identities = 27/251 (10%), Positives = 74/251 (29%), Gaps = 17/251 (6%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL----LKRQNTWYG 145
           D HG ++  ++ L + +G    ++IG  +  +     I   N   ++    +    T  G
Sbjct: 290 DRHGIIESANDALCELLGWDDAELIGQDVRVLMPNERISEFNQYLEMRLNGIHPDKTSNG 349

Query: 146 KTTLWP-IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
           + T     +G  + + + +  + +  +   F  F     +   R   +     ++ + +F
Sbjct: 350 RDTTICQKDGRLIPIRLAIGFVEL-GQESNFVAF-----ISDLRYRVEMERALRQSEAQF 403

Query: 205 SHLHEIKKGHSSV-----EKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD-DVLKTEK 258
             L     G +       E+    I             + V +  + Y H+       E+
Sbjct: 404 RSLISNIPGIAYRCLDNEERPMVFISDAIESISGYPASDYVGNPPKRYFHEHVHPDDIEE 463

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
                + +     +   +           Y    +N               +     ++ 
Sbjct: 464 TVAKVNGQHLFKVEYRIYNAKREIRWLLGYGTHAENTETGEKWLDGFIMDITERKEMEQS 523

Query: 319 ENLTPETVDKC 329
             +  +  ++ 
Sbjct: 524 LLIAKDKAEQA 534


>gi|311069406|ref|YP_003974329.1| two-component sensor histidine kinase [Bacillus atrophaeus 1942]
 gi|310869923|gb|ADP33398.1| two-component sensor histidine kinase [Bacillus atrophaeus 1942]
          Length = 578

 Score =  356 bits (913), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 88/370 (23%), Positives = 164/370 (44%), Gaps = 25/370 (6%)

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
              R  E++  +L +++E    G+ +I+  G I   NRA +K F      +LR+ +    
Sbjct: 226 EMTRTQEMQRDRLLTVIENIGSGLILIDGRGFINLVNRAYAKQFHTQPNHLLRRLYHDAF 285

Query: 502 EQNTPSVMNHYLTEILSLD---LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM 558
           E      +   +    +      R  +         +   +     +          L  
Sbjct: 286 EHEEIIQLVEEIFMTETKKCKLFRLPINIERRYFEVDGVPI-----MGPDDEWKGIVLVF 340

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
           HD++E K+ +                + DF+A VSHE++TP+T+I GF+E + +      
Sbjct: 341 HDMTETKKLE--------------QMRKDFVANVSHELKTPITSIKGFTETLLDGALD-- 384

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
                +E+ + I +    +  +V DLLD+SKIE     L  E     + + E  +L+Q  
Sbjct: 385 DREALLEFLSIILKESERLQSLVQDLLDLSKIEQQNFTLSVETFDAAKMLGEIETLLQHK 444

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738
           A+EK I    +   +   +  D+  +KQ+ LN+ +NA+ +TP  G + IS      + + 
Sbjct: 445 ASEKDIRFELNIPKDPLYVQGDVYRLKQVFLNLANNALTYTPEHGTVTISAKLAEED-IQ 503

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           + V DTG+G+   E+ +  + F ++   +     GTGLGL + K +++A+ GK  + S  
Sbjct: 504 IEVADTGIGIEKEEIPRIFERFYRVDKDRSRNSGGTGLGLAIVKHLIEAHEGKIEVKSEQ 563

Query: 799 AKGTLIEIIF 808
            +GT+  +  
Sbjct: 564 GQGTIFIVAL 573


>gi|224823753|ref|ZP_03696862.1| multi-sensor hybrid histidine kinase [Lutiella nitroferrum 2002]
 gi|224604208|gb|EEG10382.1| multi-sensor hybrid histidine kinase [Lutiella nitroferrum 2002]
          Length = 1141

 Score =  356 bits (913), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 106/638 (16%), Positives = 225/638 (35%), Gaps = 52/638 (8%)

Query: 215 SSVEKEKYDIFSQQSPPPHLRMKNKVSSLT--EYYAHKDDVLKTEKYPLLTSEESSLPEQ 272
            +       +   + PP   RM+ +                     YP     E++L   
Sbjct: 110 LASLGYVDRLTPAELPPYLSRMQQERPGFRLHPDSPRAGYTAIRYLYPPTPRNETALGLD 169

Query: 273 EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP 332
               T   N   +    G      K      ++   P++   +                 
Sbjct: 170 MYTETTRRNAMDQALDSGAPAVTGKVVPLLQNNSKDPNIFLMYWPVYRKGAA------QG 223

Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
                   L     +   +      D +    G        ++ D N   P  L      
Sbjct: 224 SVEARRAALQGWVFATFRMG-----DLMLGIFGAGAPQLNLRIYDGNEATPASLMYDTGR 278

Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN--------------------- 431
                  +        +   +      + ++   +                         
Sbjct: 279 QNTGRYHVQRHYRLGGHPWLLDIASAPELDRSVASTRYLWVMGLGLLASLLLSVFIGSIL 338

Query: 432 -GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490
                E   +  +    +       +++ +  + +  ++++G I  +N A  + FGY  E
Sbjct: 339 FARRREAAISDASAAAAKKREEHFRAVIRSAPNAMLAVDQQGFITMSNPAAVRYFGYSPE 398

Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKL 548
           ++  K   + L +              +    + +   +      K+ + + + I +  +
Sbjct: 399 ELQGKTIEMLLPERFRKHHPMLRQAFKADSKPRQMGEGRELFALCKDGREIPVEIGLSTM 458

Query: 549 PFSSCYSLT--MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
                      + DISE K  + +L    +   + + +K++FLA +SHE+RTPL +I+  
Sbjct: 459 LTEEGVQTVCSIIDISERKLSELRLREQAEQISRANRYKTEFLATMSHELRTPLNSILIL 518

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
           ++ +   R G L   + +E+A  I+RSG  +L ++ND+LD+SKIE+G+M L+ E V +++
Sbjct: 519 ADQLAENRQGNLT-AKQVEHATIINRSGKDLLALINDILDLSKIEAGRMTLNREKVLVND 577

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQI 725
            ++         A  +++  +T+  ++   +L  D   + QI  N+LSNA  FT  G  +
Sbjct: 578 LITTLRQNFLPVAENRQLTFQTTKEDSAGDVLITDATRLFQILKNLLSNAFKFTDHGS-V 636

Query: 726 IISTTHT----------SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
            +                   + + V DTG GM + +L++  + F Q+    + +  G+G
Sbjct: 637 HLRVYQPQSVPPGMDSLPQHTLAMAVTDTGCGMPSDKLDRIFEAFEQLEQGSKRQFGGSG 696

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
           LGL +++ +     G   + S    G+   +  P++  
Sbjct: 697 LGLSISRQLAHLLGGTIDVRSELGLGSTFVLYLPVHPA 734



 Score = 45.0 bits (105), Expect = 0.049,   Method: Composition-based stats.
 Identities = 22/260 (8%), Positives = 64/260 (24%), Gaps = 22/260 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY---- 144
           +D  G++   +    +  G    ++ G  +  +        +  +    K  +       
Sbjct: 376 VDQQGFITMSNPAAVRYFGYSPEELQGKTIEMLLPERFRKHHPMLRQAFKADSKPRQMGE 435

Query: 145 -GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +      +G    +P+++    + +      G +    +             +   ++
Sbjct: 436 GRELFALCKDGR--EIPVEIGLSTMLTE----EGVQTVCSIIDISERKLSELRLREQAEQ 489

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
            S  +  K    +    +                N +  L +  A       T K     
Sbjct: 490 ISRANRYKTEFLATMSHELRT-----------PLNSILILADQLAENRQGNLTAKQVEHA 538

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
           +  +   +       ++   +K +      N  K     L      +     +  +    
Sbjct: 539 TIINRSGKDLLALINDILDLSKIEAGRMTLNREKVLVNDLITTLRQNFLPVAENRQLTFQ 598

Query: 324 ETVDKCPIPFFVYSHGNLFY 343
            T +       +     LF 
Sbjct: 599 TTKEDSAGDVLITDATRLFQ 618


>gi|182412598|ref|YP_001817664.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
 gi|177839812|gb|ACB74064.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
          Length = 1559

 Score =  355 bits (912), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 103/665 (15%), Positives = 210/665 (31%), Gaps = 49/665 (7%)

Query: 184  VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL 243
            +H+  +     A     + + + L  +          +  I         +         
Sbjct: 753  LHLAELRRKAEAKVTASEARLAQLVAMLPAGIYTVDAEGRITFYNPRAAEIWQARPTLHA 812

Query: 244  TEYYAHKDDVLKTEKYPLLTSEESSLPEQED-----------FHTINLNQYTKKQYFGTL 292
                      +  E    +  E   +P                   + +++         
Sbjct: 813  PYAEFAAQFKIIGEDGREVAMETRPMPTVLREGRNLVTNEIELERPDGSRFFANFSISPT 872

Query: 293  QNNSKESFEYLSHRNHPSLSA----YFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPS 347
                 +    ++     +            E        +  I        G +   NP+
Sbjct: 873  FGPDGQISGAIAVFQDVTAERQARVALRATEERYRAVFQQASIGIMECDLEGRILRCNPA 932

Query: 348  FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
               L  Y   +     G     L  P+    N      L R DR            +   
Sbjct: 933  LARLVGYAEAEL---CGMNWRDLCPPEEVGENERVAQRLLRGDRPSFTGE---RRYRRKD 986

Query: 408  ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
             +   +        +          +  +  + +  + ++     +     +     + I
Sbjct: 987  GSVGWIDIFATSIFDDSGRPTYGLAMLVDITERKRAEAELRETEERFRVAADNAPVLLWI 1046

Query: 468  INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
             + +      N+   +  G  +E  +   +   +       +                  
Sbjct: 1047 ADTDKQRTWFNQPWLEFVGRTLEQEVGLGWLDNVHPEDRDHVLEVFDTAFERRGP--FRL 1104

Query: 528  ITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKN--------------K 570
                   + +   + +             Y  +  DI++ +  +               +
Sbjct: 1105 EYRIRRHDGEYRWMLVHGVPRQQDEEFVGYIGSCVDITDRRLAEEAIHASRNAERAHRVE 1164

Query: 571  LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
            L  A+  A   S  K DFLA +SHE+RTPL+ ++  +    +    P   P        I
Sbjct: 1165 LERARDEAVAASRAKDDFLAALSHELRTPLSPVLLLA---SDAAADPQLPPSVRADFETI 1221

Query: 631  DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
             +S  L   +++DLLD+++I   K++L    V    A+ +A+  V+     KRI +    
Sbjct: 1222 RKSVELEARLIDDLLDLTRIVRDKISLDLREVDAPVALRDALINVRAEFEAKRIGLVLDL 1281

Query: 691  ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-SNEEVILRVRDTGVGMT 749
            +     + AD   ++Q+  N+L NA+ FTP+GG++ I++        ++L V DTG+GMT
Sbjct: 1282 SPEPQFVRADPVRLQQVIWNVLKNAVKFTPAGGRVTITSRIDHERRRLVLAVADTGIGMT 1341

Query: 750  NYELEKAMKPFGQIP---NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIE 805
              E+E+A + F Q     +    R  G GLGL +++ +V+ + G     S    +G +  
Sbjct: 1342 AGEIERAFEAFAQGDHAGSGGSHRFGGLGLGLAISRRVVELHGGSITAQSPGRGRGAVFR 1401

Query: 806  IIFPL 810
            I  PL
Sbjct: 1402 IELPL 1406



 Score =  260 bits (665), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 108/605 (17%), Positives = 203/605 (33%), Gaps = 76/605 (12%)

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
           +    +                G        + ++ S    P  +        L+     
Sbjct: 2   ADASDKTAGQSGPTCAADPFRGGGEAGAILRAIDWPSKPIGPVDTWPQSLRTALSLCLAS 61

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
           + PI   ++    L++ N ++  +   K    +      S +   P++ +++    +   
Sbjct: 62  RHPICI-IWGPDRLYFYNDAYAPILGEKHPWALGE----SYITVWPEIWESSIRPILEQV 116

Query: 388 RSDRTCIAASARLHTIQWNR-ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
                       L  ++ +         F       +            E     + +R+
Sbjct: 117 EQTGEASWCDDLLLVLRRHGFNEECYFAFSFAPTRVEDGSVGGVFTAITETTLQVVGERR 176

Query: 447 MEIEVMQLCSILEATSDG-------------------------IAIINREGIILSTNRAV 481
           +      L  +     D                             I+  G         
Sbjct: 177 L----HTLRDLGARAPDARSAEEACRIAADVLAQNRYDVPFALFYAIDETGQ-------A 225

Query: 482 SKLFGYPVED--ILRKPFTVFLEQNTPSVMNHYLTEILSLD------LRQTLEKITLGST 533
           +KL   P  +      P  V L+Q  P    H+   I S        L + L  +  G  
Sbjct: 226 AKLVPGPGIEPGARGTPARVALDQEDPEDFWHFGEVIRSGKPRVHSQLPEDLGPLPKGPW 285

Query: 534 KEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK------------------------N 569
            E    ++ + I +   S  Y L +   S  +                            
Sbjct: 286 PERPHTAVVLPIARPGESVPYGLLVCGASARRPLDPDYQSFFSLIASQVATAVANALAFA 345

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +     +        K DF + VSHE RTPLT I+G  E + ++           E    
Sbjct: 346 EQRRRAESLAALDRAKIDFFSNVSHEFRTPLTLILGPLEELLSEPARSALPADAREQLKV 405

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           + R+   +L +VN LLD S++E+G+++ HFEPV L E  ++ +++ +    +  + ++  
Sbjct: 406 VHRNSLRLLKLVNMLLDFSRLEAGRIDAHFEPVDLPEFTADLVAVFRSAIEKAGLRLQVD 465

Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749
                   L D    ++I  N+LSNA  FT  G +I +S          LRVRDTG+G+ 
Sbjct: 466 CPPAPFPALVDREMWEKIVFNLLSNAFKFTRHG-EIEVSLHCL-GPTFELRVRDTGLGIP 523

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
                +  K F ++ ++     EGTG+GL L + +V  + G   + S    GT++ +  P
Sbjct: 524 PESQSEVFKRFHRLKHAHSRTHEGTGIGLSLVQELVRLHGGTVSLTSEVNVGTIVSVTIP 583

Query: 810 LYDTS 814
           ++  +
Sbjct: 584 VHRPA 588



 Score =  139 bits (349), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 50/403 (12%), Positives = 111/403 (27%), Gaps = 17/403 (4%)

Query: 186  VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE 245
             N    D      R     + + + +   + V   K D+       P L     + +L E
Sbjct: 644  DNADMRDYVMRLLREHYDIAAVADGQAALALVRHWKPDLVLADIMMPGLDGFELLQALRE 703

Query: 246  YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
              A +   +         + E S  E  +    +             +  S+     L  
Sbjct: 704  SPATQQLPVILLSAR---AGEESRSEGLEAGADDYLIKPFSARELLARVQSQLHLAEL-- 758

Query: 306  RNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSV--DDIEI 362
                   A     E    + V   P   + V + G + + NP    + + +         
Sbjct: 759  --RRKAEAKVTASEARLAQLVAMLPAGIYTVDAEGRITFYNPRAAEIWQARPTLHAPYAE 816

Query: 363  AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
                  ++           +P+     +   +  +  +   + +     A  F       
Sbjct: 817  FAAQFKIIGEDGREVAMETRPMPTVLREGRNL-VTNEIELERPDGSRFFA-NFSISPTFG 874

Query: 423  QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
               +      +  +    R  +  +     +  ++ +  S GI   + EG IL  N A++
Sbjct: 875  PDGQISGAIAVFQDVTAERQARVALRATEERYRAVFQQASIGIMECDLEGRILRCNPALA 934

Query: 483  KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
            +L GY   ++    +                  +L  D             K+  +  + 
Sbjct: 935  RLVGYAEAELCGMNWRDLCPPEEVGENERVAQRLLRGDRPS-FTGERRYRRKDGSVGWID 993

Query: 543  IIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAEKE 581
            I    +   S         + DI+E K+ + +L   ++     
Sbjct: 994  IFATSIFDDSGRPTYGLAMLVDITERKRAEAELRETEERFRVA 1036



 Score =  106 bits (265), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 34/387 (8%), Positives = 99/387 (25%), Gaps = 34/387 (8%)

Query: 86   TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR------ 139
             + +DA G +   +    +         +     + +    I   +     ++       
Sbjct: 784  IYTVDAEGRITFYNPRAAEIWQARPT--LHAPYAEFAAQFKIIGEDGREVAMETRPMPTV 841

Query: 140  ----QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA 195
                +N    +  L   +G+      + +  P +  + + SG     +      +   R 
Sbjct: 842  LREGRNLVTNEIELERPDGS--RFFANFSISPTFGPDGQISGA--IAVFQDVTAERQARV 897

Query: 196  LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDV 253
              +  ++++  + +           +  I         L    + ++  +        + 
Sbjct: 898  ALRATEERYRAVFQQASIGIMECDLEGRILRCNPALARLVGYAEAELCGMNWRDLCPPEE 957

Query: 254  L---KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH----R 306
            +   +     LL  +  S   +  +   + +      +  ++ ++S      L+      
Sbjct: 958  VGENERVAQRLLRGDRPSFTGERRYRRKDGSVGWIDIFATSIFDDSGRPTYGLAMLVDIT 1017

Query: 307  NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGG 365
                  A   E E       D  P+  ++        + N  +L         ++   G 
Sbjct: 1018 ERKRAEAELRETEERFRVAADNAPVLLWIADTDKQRTWFNQPWLEFVGRTLEQEV-GLGW 1076

Query: 366  LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
            L  +    +             R               + + E    +         Q  
Sbjct: 1077 LDNVHPEDRDHVLEVFDTAFERRG-----PFRLEYRIRRHDGEYRWMLVHG--VPRQQDE 1129

Query: 426  ENMPQNGIEPEDVDTRINKRKMEIEVM 452
            E +   G   +  D R+ +  +     
Sbjct: 1130 EFVGYIGSCVDITDRRLAEEAIHASRN 1156



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/385 (10%), Positives = 108/385 (28%), Gaps = 30/385 (7%)

Query: 90   DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN--TWYGKT 147
            D  G +   +  L + +G    ++ GM   D+     +  N  +   L R +  ++ G+ 
Sbjct: 921  DLEGRILRCNPALARLVGYAEAELCGMNWRDLCPPEEVGENERVAQRLLRGDRPSFTGER 980

Query: 148  TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                 +G+     ID+ A  I+  +   +   G  ++          A  +  +++F   
Sbjct: 981  RYRRKDGSVG--WIDIFATSIFDDSGRPT--YGLAMLVDITERKRAEAELRETEERFRVA 1036

Query: 208  HEIKKGHSSVEKEKYDIFSQQSP---PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
             +       +            P        ++ +V        H +D     +      
Sbjct: 1037 ADNAPVLLWIADTDKQRTWFNQPWLEFVGRTLEQEVGLGWLDNVHPEDRDHVLEVFDTAF 1096

Query: 265  EES-SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
            E       +      +          G  +   +E   Y+      +     +E  + + 
Sbjct: 1097 ERRGPFRLEYRIRRHDGEYRW-MLVHGVPRQQDEEFVGYIGSCVDITDRRLAEEAIHASR 1155

Query: 324  ETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
                             +         +   ++ DD      L+ L    +   +  +  
Sbjct: 1156 N----------AERAHRVELERARDEAVAASRAKDDF-----LAALSHELRTPLSPVLLL 1200

Query: 384  VMLYRSDRTCIA-ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE---DVD 439
                 +D        A   TI+ + E    +     +      + +  +  E +    + 
Sbjct: 1201 ASDAAADPQLPPSVRADFETIRKSVELEARLIDDLLDLTRIVRDKISLDLREVDAPVALR 1260

Query: 440  TRINKRKMEIEVMQLCSILEATSDG 464
              +   + E E  ++  +L+ + + 
Sbjct: 1261 DALINVRAEFEAKRIGLVLDLSPEP 1285



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 44/397 (11%), Positives = 90/397 (22%), Gaps = 27/397 (6%)

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
           RL    S  HE      S+ +E   +               + S+T              
Sbjct: 536 RLKHAHSRTHEGTGIGLSLVQELVRLHGGTVSLTSEVNVGTIVSVTIPVHRPAGTPANPG 595

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
            P   S        E+      +    +     ++  +    +              D  
Sbjct: 596 APRSASGVEPRAFVEE------SLRWIQPTDAVMKAPAVPRADRPPLARVLLADDNADMR 649

Query: 319 ENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
           + +     +   I         L     + +   K   V    +  GL        L ++
Sbjct: 650 DYVMRLLREHYDIAAVADGQAAL-----ALVRHWKPDLVLADIMMPGLDGFELLQALRES 704

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
            A + +         I  SAR      +            +  +                
Sbjct: 705 PATQQL-------PVILLSARAGEESRSEGLEAGADDYLIKPFSARELLARVQSQLHLAE 757

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV-------ED 491
             R  + K+     +L  ++     GI  ++ EG I   N   ++++           E 
Sbjct: 758 LRRKAEAKVTASEARLAQLVAMLPAGIYTVDAEGRITFYNPRAAEIWQARPTLHAPYAEF 817

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
             +        +          T +       T E             +  I     P  
Sbjct: 818 AAQFKIIGEDGREVAMETRPMPTVLREGRNLVTNEIELERPDGSRFFANFSISPTFGPDG 877

Query: 552 S--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
                     D++  +Q +  L   ++         S
Sbjct: 878 QISGAIAVFQDVTAERQARVALRATEERYRAVFQQAS 914



 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/262 (8%), Positives = 52/262 (19%), Gaps = 13/262 (4%)

Query: 78  PIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL 137
                +   W  D    L   ++     +G      +G     V   +       I + +
Sbjct: 60  ASRHPICIIWGPD---RLYFYNDAYAPILGEKHPWALGESYITVWPEIWESSIRPILEQV 116

Query: 138 K--RQNTW-YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR 194
           +   + +W      +    G N       +  P    +    G   F  +    +     
Sbjct: 117 EQTGEASWCDDLLLVLRRHGFNEECYFAFSFAPTRVEDGSVGGV--FTAITETTLQVVGE 174

Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254
                L    +   + +    +       +   +   P         +           +
Sbjct: 175 RRLHTLRDLGARAPDARSAEEACRIAADVLAQNRYDVPFALFYAIDETGQAAKLVPGPGI 234

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
           +               + EDF        + K    +                 P  +  
Sbjct: 235 EPGARGTPARVALDQEDPEDFWHFGEVIRSGKPRVHSQLPEDLGPLPKGPWPERPHTAVV 294

Query: 315 FDEGENLTPETVDKCPIPFFVY 336
                       +  P    V 
Sbjct: 295 LPIARPG-----ESVPYGLLVC 311


>gi|88859369|ref|ZP_01134009.1| sensor histidine kinase with multiple PAS/PAC and a response
           regulator receiver domain [Pseudoalteromonas tunicata
           D2]
 gi|88818386|gb|EAR28201.1| sensor histidine kinase with multiple PAS/PAC and a response
           regulator receiver domain [Pseudoalteromonas tunicata
           D2]
          Length = 901

 Score =  355 bits (912), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 128/668 (19%), Positives = 235/668 (35%), Gaps = 48/668 (7%)

Query: 179 RGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKN 238
           RG G++ + +  +    +     ++     +       +     D+F  Q   P  R K 
Sbjct: 111 RGLGLIRLVKPQDQTAFIEMAKAER----PDNTFNIRQLAPHNDDLFIIQYIEPESRNKQ 166

Query: 239 KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE 298
            V       A + +                +   +               F +L   +  
Sbjct: 167 AVGLDIGSEAMRRNAALNAAEYDSPRLTGPITLVQANQKTQQGFLILSPVFNSLTPPTTS 226

Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYK-SV 357
                +           DE  +     V        +        +   F        ++
Sbjct: 227 KQRVANVVAWSYSPILIDEVLSD----VSSLKADIILSISDQTTQSPQQFYTFGDMAFAL 282

Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
           ++      +  L    +L+     + +          A  A +          +   F  
Sbjct: 283 NEHRSVHTIDLLGRQWQLTLTATPEFLNELNLAPPYQAFGAVMTITF----TIMLALFSG 338

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM-QLCS------------ILEATSDG 464
                +  +         +  +  + +  +++E   +  +            ILEA+S  
Sbjct: 339 QLILMRQSQMKAYELELAQAREKALTEANLKLEEQVEQRASEIANINLLQKRILEASSYA 398

Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP-----SVMNHYLTEILSL 519
           I   + +GII   N A  K+ GY V +++ K                  ++  L   +  
Sbjct: 399 IITTDIKGIITLINPAGEKMLGYSVNELVGKLNPGIFHLPDEIMTRAQALSDELGTQIEP 458

Query: 520 DLRQTLEKITLGS---------TKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQ 566
                + K  +G           KE K   +++ I  L         +     D++E  +
Sbjct: 459 GFEVFVAKARIGQQDINRWTYVHKEGKQFQVKLSINSLYNEFNELVGFLGIASDLTEQLK 518

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
            +  L+HAK  AEK    KS+FLA +SHEIRTP+  + G  +++K +     G       
Sbjct: 519 REQALAHAKDRAEKAVKVKSEFLANMSHEIRTPMNGLFGVMQLLKQENLSSDG----KNL 574

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
            +    S   +  I+ND+LD SKIE+GK+ L      L E +    S + + A  K+I +
Sbjct: 575 LDKALYSAKNLTVIINDILDFSKIEAGKLTLELTNFKLSELIEHINSDLSVNAFNKQIDL 634

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
                        D   ++QI LNI+SNAI FT +GG  ++     ++  + + V DTG+
Sbjct: 635 TFEINVKHDFWFGDPIRIRQILLNIISNAIKFTNTGGVKVLVNALPTSNGLQISVIDTGI 694

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+    +E+    F Q   S   +  GTGLGL ++++++D   G+  + S   KGT   I
Sbjct: 695 GIAPDAIERLFNRFEQADKSTTRKYGGTGLGLSISQSLIDLMQGEISVTSEENKGTSFSI 754

Query: 807 IFPLYDTS 814
           + PL    
Sbjct: 755 MIPLVQAH 762



 Score = 41.6 bits (96), Expect = 0.60,   Method: Composition-based stats.
 Identities = 20/154 (12%), Positives = 40/154 (25%), Gaps = 21/154 (13%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH----------------IDPNNH 132
            D  G +  I+    K +G    +++G     +  +                  I+P   
Sbjct: 402 TDIKGIITLINPAGEKMLGYSVNELVGKLNPGIFHLPDEIMTRAQALSDELGTQIEPGFE 461

Query: 133 IGDLLKR-QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN 191
           +     R       + T    EG      + L+   +Y+   E  GF G  I        
Sbjct: 462 VFVAKARIGQQDINRWTYVHKEGKQFQ--VKLSINSLYNEFNELVGFLG--IASDLTEQL 517

Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF 225
                      +     ++K    +    +    
Sbjct: 518 KREQALAHAKDRAEKAVKVKSEFLANMSHEIRTP 551


>gi|288962975|ref|YP_003453269.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
 gi|288915241|dbj|BAI76725.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
          Length = 1310

 Score =  355 bits (912), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 107/678 (15%), Positives = 225/678 (33%), Gaps = 68/678 (10%)

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS------PPPHLRMKN 238
               +     A  +   +  +   E+ +          D              P  +   
Sbjct: 195 REVALRERAEAELRDRSRLLNLAEEVGQFGHWYIDFVTDTRRWSDEVYRILGLPPQQEPP 254

Query: 239 KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE 298
            V      Y   D  L                 +      +                   
Sbjct: 255 TVELSRASYHPDDLPLLARMAERARRTGEGFSVEARVVRRDGGMRHVFVRASVECGADGR 314

Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVD----KCPIPFFVYSHGNL-FYANPSFLLLTK 353
               L      + +   +       E +D          + ++      + +P++     
Sbjct: 315 PAGLLGVVQDITDAKREEAELRSNRELLDLTVQATRDGIWDWNLETGGIWFSPTWKEQLG 374

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
           Y+  +        + L+      ++       +   +   I     +   +  R +++ +
Sbjct: 375 YRDDELENSLEMWAGLIFE----EDRFTALETVRAYNAGLIPNFEAVQRFRHKRGHTVYI 430

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
                   +     +   G   +    ++ + ++ +    L   +EA  +G+A  + +  
Sbjct: 431 LSRAIHIRDAAGRVVRMVGAHTDITREKLTEEELRLAKQTLDDAIEAVPEGLAYFDADDR 490

Query: 474 ILSTNRAVSKLFGYPVEDIL-RKPFTVFLE--------------QNTPSVMNHYLTEILS 518
           ++  N    +            +PF   L                +  + +   L +  +
Sbjct: 491 LILCNERYREAHPLTAPLFTPGRPFEEILRAAVANGEFAGNPDGPSDEAWIQAELAQHRN 550

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA---- 574
                  E+       + + +   ++ +    S     T  DI+E K+ + +L       
Sbjct: 551 PGAP--FEREL----PDGRWI---VVAENRTSSGSLVCTRTDITERKRFEAELQRQAADM 601

Query: 575 -----------------KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
                            +  AE  +  KS+FLA +SHEIRTP+  I+G +E++ +     
Sbjct: 602 CALAEGLDAAREEADALRARAEAATQAKSEFLAAMSHEIRTPMNGIMGMTELLFDTPL-- 659

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
                  ++A  I  S N +L I+ND+LDISK+E+G++ +   P    + V   + L+  
Sbjct: 660 --TEEQRQFAQAIRSSSNALLTIINDILDISKLEAGRVTIETLPFDPADLVEGVVELLTP 717

Query: 678 YANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNE 735
            A+EK I I       + R +L D   ++QI +N++ NA+ FT  G   + +     ++ 
Sbjct: 718 RAHEKGIEIGFYIDPPLRRTLLGDPTRIRQILVNLVGNAVKFTDQGSVAVELEAREATDA 777

Query: 736 EVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
            ++LR  V DTG+G+    +      F Q+  S   +  GTGLGL + + + +   G   
Sbjct: 778 HLVLRMTVTDTGIGIPAEAMPTLFNKFQQVDGSITRKFGGTGLGLAICRQLSELMGGSIA 837

Query: 794 IFSTPAKGTLIEIIFPLY 811
           + S    G+   +  PL 
Sbjct: 838 VESRLGSGSRFLVDLPLA 855


>gi|117926677|ref|YP_867294.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117610433|gb|ABK45888.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 874

 Score =  355 bits (912), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 109/471 (23%), Positives = 208/471 (44%), Gaps = 24/471 (5%)

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
           + +    +++L +  L      + V L  +           H I    ++ LA+T   F 
Sbjct: 156 LALLAMSASILVSWLLGSYLTRQLVHLREAATAIGHGHFN-HRIPVQGQDELALTATAFN 214

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
           + +   +   Q   +      R+ K +         +I+    DG+  ++  G +LS N 
Sbjct: 215 RMSGELDKTYQRLKKSLYTSNRMAKLEA--------TIMHTVMDGLITMDSSGKVLSFNH 266

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE---KITLGSTKEE 536
           A   +FGY   +++ +  T+ + +   S  + Y+   L     + +    +      K+ 
Sbjct: 267 AAEGIFGYAAAEVVGEQITMLMPEPYRSQHDDYVQRYLQGAAPRVIGSAGRHVTAQRKDG 326

Query: 537 KLLSLRIIIKKL--PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
            LL +R+ + ++       +   + D+SE  QE+  L  AK+ AE  +  KS FLA +SH
Sbjct: 327 ALLPIRLSVNEMVFEGERLFVGLVADVSERLQEERALIEAKEQAEAANMAKSRFLAVMSH 386

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           E+RTP+  I+G   ++ ++R     + +  E+      S   +L ++ND+LD SKIE+G 
Sbjct: 387 EVRTPMNGILGMLGLLNDRRL----DGQQQEWLATAQESAESMLTLLNDILDFSKIEAGH 442

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILS 713
           + L     S ++ +     L    A  K I +      N+P  +  D   ++Q+ +N++S
Sbjct: 443 LELEQSAFSPEQILKGVHDLFLPRATAKGITLELEQGANLPAWVQGDPGRLRQVLMNLVS 502

Query: 714 NAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
           N I FT  GG + +     +  E    +   V+D+G+G+   +L +  +PF Q+  S   
Sbjct: 503 NGIKFTHQGG-VTMRVAQQAKREDSLLLQFEVQDSGIGIPPQQLTQLFQPFNQLDPSYSR 561

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820
           +  G+GLGL + + +VD   G+  + S P+ G+             P D +
Sbjct: 562 KYGGSGLGLAICRHLVDLMGGEIRLESPPSGGSRFTFTARFGYAHAPQDEV 612



 Score = 46.9 bits (110), Expect = 0.015,   Method: Composition-based stats.
 Identities = 28/250 (11%), Positives = 67/250 (26%), Gaps = 17/250 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD-ILHIDPNNHIGDLLKRQNTWYGKT 147
           +D+ G +   +       G  A +++G ++  +         ++++   L+         
Sbjct: 255 MDSSGKVLSFNHAAEGIFGYAAAEVVGEQITMLMPEPYRSQHDDYVQRYLQGAAP----- 309

Query: 148 TLWPIEGTNLYV----PIDLAALPIYSRNRE--FSGFRGF-GIVHVNRVDNDPRALGKRL 200
               + G+          D A LPI     E  F G R F G+V                
Sbjct: 310 ---RVIGSAGRHVTAQRKDGALLPIRLSVNEMVFEGERLFVGLVADVSERLQEERALIEA 366

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
            ++    +  K    +V   +              + ++     +           E   
Sbjct: 367 KEQAEAANMAKSRFLAVMSHEVRTPMNGILGMLGLLNDRRLDGQQQEWLATAQESAESML 426

Query: 261 LLTSEESSLPEQEDFH-TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
            L ++     + E  H  +  + ++ +Q    + +                  A      
Sbjct: 427 TLLNDILDFSKIEAGHLELEQSAFSPEQILKGVHDLFLPRATAKGITLELEQGANLPAWV 486

Query: 320 NLTPETVDKC 329
              P  + + 
Sbjct: 487 QGDPGRLRQV 496


>gi|332703945|ref|ZP_08424033.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332554094|gb|EGJ51138.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 848

 Score =  355 bits (912), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 110/414 (26%), Positives = 198/414 (47%), Gaps = 14/414 (3%)

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470
             +      +         +  +E E     + +R  +    +  +++++ SD I + +R
Sbjct: 194 RHVDLRAEAERRFSELEAVRGAVERESAGRLVAERAFQQVQQEYKTLMDSASDLILVHDR 253

Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ-NTPSVMNHYLTEILSLDLRQTLEKIT 529
           +  I   N  V  L G P E  L +   V + +     V N +L ++L      ++    
Sbjct: 254 DLRIRYVNPVVESLAGQPPEHYLGQGIEVIIPEREVAGVFNSHLRQVLQSGKDSSISFQL 313

Query: 530 LGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
                + + +  R+   +            + DI+ +K+ +++L  AK+ AE+ +  KS+
Sbjct: 314 DSVRHK-RHMQARLTPVQDAAGSMGSVLAVVRDITRFKRLEDRLRQAKREAEESNRAKSE 372

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           FLA +SHEIRTPL A++G +E +    F      R  EY   I  S + +L I++D+LD+
Sbjct: 373 FLANMSHEIRTPLNAVLGLAERLS---FITEPRER-DEYVRMIKHSAHALLAIIDDILDL 428

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQ 706
           SKIE+GK+++H +   L   + + +S  +  A EK + +  S  N +P  +LAD     Q
Sbjct: 429 SKIEAGKLDVHEQEFELAALLEKVVSPYRYQAQEKGLELAVSVGNAVPAWMLADPDKFSQ 488

Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQ 762
           +  N++SNAI FT  G  + IS T+ + +     +++ V DTG+G+      +    F Q
Sbjct: 489 VLTNLVSNAIKFTEEGS-VEISVTNDNRDSRDMGLLVCVHDTGLGIPWDMQARLFNSFSQ 547

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           + +S      GTGLGL ++K +V+   G+ ++ S P KG+      P+   S P
Sbjct: 548 LDSSYSKSFGGTGLGLAISKRLVEMLGGRIWVESMPGKGSSFSFTLPIASVSKP 601



 Score = 40.8 bits (94), Expect = 0.90,   Method: Composition-based stats.
 Identities = 9/138 (6%), Positives = 36/138 (26%), Gaps = 7/138 (5%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP--NNHIGDLLKRQNTWYGKT 147
           D    ++ ++  +    G      +G  +  +     +    N+H+  +L+        +
Sbjct: 252 DRDLRIRYVNPVVESLAGQPPEHYLGQGIEVIIPEREVAGVFNSHLRQVLQSGK---DSS 308

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
             + ++       +     P+              +V             ++  ++    
Sbjct: 309 ISFQLDSVRHKRHMQARLTPVQDAAGSMGSV--LAVVRDITRFKRLEDRLRQAKREAEES 366

Query: 208 HEIKKGHSSVEKEKYDIF 225
           +  K    +    +    
Sbjct: 367 NRAKSEFLANMSHEIRTP 384


>gi|300868153|ref|ZP_07112786.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300333856|emb|CBN57966.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 1175

 Score =  355 bits (912), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 111/679 (16%), Positives = 241/679 (35%), Gaps = 77/679 (11%)

Query: 182  GIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS 241
             IV         + +     ++F  L E       +   +    S       +R  +  S
Sbjct: 525  AIVRSLLEPWGLKIIALADPRQFWELLETTSPDLLILDIEMPQISGTELCQIVRNDSSWS 584

Query: 242  SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301
            SL   +       ++         +  + +      +      + +    ++        
Sbjct: 585  SLPILFLTAHSDAESINQVFSVGADDFVSKPIVGPELVTRIINRLERIRAVKREMG---- 640

Query: 302  YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDI 360
                 +     A     E      ++   +  + ++        +     L         
Sbjct: 641  -----DRQQAKAGLTRSELRLQLALEAGQMGIWDWNLLTNQIIWSEEHERLFGLAP---- 691

Query: 361  EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
                G   +  +    ++       L  + +      ++ + I W+  +   +       
Sbjct: 692  GTFDGTDKMFYSYLHPEDCESLIAQLNLARQQQTDY-SQYYRIVWSNGSIHWIESKGKFF 750

Query: 421  ANQFPENMPQNGIEPEDVDTRINKRKMEIEV----------------------------- 451
             N+  E +   G   +    +  +  ++ E                              
Sbjct: 751  YNETGEPVRILGTVRDITACKQAEEALQNEKNNLERRVTERTTELQEVNNCMQSELEEHK 810

Query: 452  ----------MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
                       +   IL+   D I  ++R   I   N+   K+FGY  E+ + +P  V L
Sbjct: 811  RIQEALQISQARFAGILDIAEDAIISLDRHQRITLFNQGAEKIFGYSAEEAIGQPLDVLL 870

Query: 502  EQNTPSVMNHYLTEILSLDLRQTL---EKITLGSTKEEKLLSLRIIIKKL--PFSSCYSL 556
                  V   Y+ +     +R       +   G  K+         I KL       +++
Sbjct: 871  PLRFVQVHQQYVNDFGQSPIRSRRMGERREISGRRKDGTEFPAEASISKLNLDKEVAFTV 930

Query: 557  TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
             + DI++ KQ +                K +F++ VSHE+RTPLT+I G   ++ +    
Sbjct: 931  FLQDITDRKQIE--------------RMKDEFISIVSHELRTPLTSIHGSLGMLASGLLK 976

Query: 617  PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
               +            S + ++ ++ND+LDI +IESG++ +  +  ++++ ++EA+++VQ
Sbjct: 977  A-DSEEGKRMLYIAVDSTDRLVRLINDILDIERIESGRVKMEKQCCNVEDLITEAVNVVQ 1035

Query: 677  LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
              AN+  + +  S ++    + AD   + Q  +N+LSNAI F+ +G  + ++        
Sbjct: 1036 ALANK--VEVTLSVSSLSISLWADPDRIVQTLINLLSNAIKFSHTGKIVWLTVQQQDR-H 1092

Query: 737  VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
            ++  V+D G G+   +LE   + F Q+ +S     EGTGLGL + +++V  + G  ++ S
Sbjct: 1093 LLFIVKDEGRGIPTEKLESIFERFQQVDSSDSRNHEGTGLGLAICRSIVQQHDGHIWVES 1152

Query: 797  TPAKGTLIEIIFPLYDTSH 815
               +G++   + P+ D   
Sbjct: 1153 VLGEGSIFYFMIPIRDCEQ 1171



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 60/511 (11%), Positives = 127/511 (24%), Gaps = 54/511 (10%)

Query: 105 TIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLA 164
           T G  A   +  R+     +      + +  L +       +             P +  
Sbjct: 313 TFGLSAGSELARRIERTLKVEQPLSQDRVRQLREWVRLLREEIERSHSISELSVTPTEPD 372

Query: 165 ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDI 224
             P  +                   D  P  L    D+  +     +      + E    
Sbjct: 373 PTPSATEA--------------TTADERPLLLIVDRDRSLAKKLIAEATTWGFDLEVATN 418

Query: 225 FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY---PLLTSEESSLPEQEDFHTINLN 281
            +       L+  + V      +    + L                   E++D  T    
Sbjct: 419 LTIARNKIGLKSPDLVLLEPAIFPTAAESLTLLAELKKHAPPIPAIIFTERDDLTTRLEV 478

Query: 282 QYTKKQYFGT----LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS 337
               +  F               + L   +         + +      V     P   + 
Sbjct: 479 ARLGEHTFLPKSVPPSQILDAINQVLHQVDREKARVMVVDDDPKMLAIVRSLLEP---WG 535

Query: 338 HGNLFYANPS-FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA 396
              +  A+P  F  L +  S D +         +   ++   +  +   + R+D +  + 
Sbjct: 536 LKIIALADPRQFWELLETTSPDLL---------ILDIEMPQISGTELCQIVRNDSSWSSL 586

Query: 397 SARLHTIQWNRENSLAM------------TFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
                T   + E+   +               P               ++ E  D +  K
Sbjct: 587 PILFLTAHSDAESINQVFSVGADDFVSKPIVGPELVTRIINRLERIRAVKREMGDRQQAK 646

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR--KPFTVFLE 502
             +    ++L   LEA   GI   N     +  +    +LFG          K F  +L 
Sbjct: 647 AGLTRSELRLQLALEAGQMGIWDWNLLTNQIIWSEEHERLFGLAPGTFDGTDKMFYSYLH 706

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR----IIIKKLPFSSCYSLTM 558
                 +   L   L+   +    +          +  +         +         T+
Sbjct: 707 PEDCESLIAQLN--LARQQQTDYSQYYRIVWSNGSIHWIESKGKFFYNETGEPVRILGTV 764

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
            DI+  KQ +  L + K   E+  + ++  L
Sbjct: 765 RDITACKQAEEALQNEKNNLERRVTERTTEL 795


>gi|319651812|ref|ZP_08005937.1| sensor protein [Bacillus sp. 2_A_57_CT2]
 gi|317396464|gb|EFV77177.1| sensor protein [Bacillus sp. 2_A_57_CT2]
          Length = 591

 Score =  355 bits (912), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 93/364 (25%), Positives = 175/364 (48%), Gaps = 23/364 (6%)

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
           E++  +L +++E    G+ +I+  G I   NR   ++F     + L K +   +E     
Sbjct: 241 EMQQDRLGALIENMGSGLILIDSRGYINLMNRPYKEVFNVNPSEYLYKLYYEVIEH---K 297

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWK 565
            +   + EI   + ++  +++ +    E +   +  +             L  HDI+E K
Sbjct: 298 GITEMVEEIFMTE-QKVKKQLIIPVNIERRYFEVYGVPIIGTNDEWKGILLVFHDITELK 356

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + +                + DF+A VSHE++TP+T+I GFSE + +            +
Sbjct: 357 KLE--------------QMRKDFVANVSHELKTPITSIKGFSETLLDGAM--EDKQALND 400

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           + + I +  + +  ++ DLLD+SKIE    +L  + + L + + + +++++  A EK I+
Sbjct: 401 FLSIILKESDRLQSLIQDLLDLSKIEKQGFSLSIQQLDLTDVLEDVMAIMKGKAAEKEIV 460

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
            +         I  D+  +KQ+ +NI+SNAI +TP+ G I IS   T    V+  +RDTG
Sbjct: 461 FKYQRDEKPVYIEGDIHRLKQVFINIISNAISYTPNQGVIYISAAKT-GSTVLTEIRDTG 519

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+   E+ +  + F ++  ++     GTGLGL + K +V+A+ G   + S   KGT   
Sbjct: 520 IGIEASEIPRIFERFYRVDKARSRNSGGTGLGLAIVKHLVEAHKGSISVKSEVGKGTSFI 579

Query: 806 IIFP 809
           I  P
Sbjct: 580 IELP 583


>gi|239905559|ref|YP_002952298.1| putative two-component hybrid sensor and regulator [Desulfovibrio
            magneticus RS-1]
 gi|239795423|dbj|BAH74412.1| putative two-component hybrid sensor and regulator [Desulfovibrio
            magneticus RS-1]
          Length = 2025

 Score =  355 bits (912), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 111/720 (15%), Positives = 226/720 (31%), Gaps = 39/720 (5%)

Query: 117  RLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFS 176
                       D   H    + RQ                    + L        +   +
Sbjct: 1178 SWLLSVHPDDRDRAAHDVAEMARQEAPLAVEYRLNTHDGRERWLLSL-GELQRDMHG--T 1234

Query: 177  GFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK---------GHSSVEKEKYDIFSQ 227
            G    G+V                + ++  L E                 +   Y +   
Sbjct: 1235 GTAYLGLVLDITERKRLERELHENEGRYRSLFESMNEGLCLLEMVRDPDGQPVDYRVLDV 1294

Query: 228  QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287
                  +       ++        ++ +     +      +         +       + 
Sbjct: 1295 NPAYGRILGVAPDQAVGRLVREIFNLKQAPNLDVYVPLLETRQPATFESMLPELGKHFRV 1354

Query: 288  YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANP 346
                LQ     +                +       E     P+P  ++  HG +   N 
Sbjct: 1355 SAFALQGERFVAMFQDVTALWE-ARQAEERSALRFRELFGFSPLPMGYMDQHGRILDLNR 1413

Query: 347  SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN---NAIKPVMLYRSDRTCIAASARLHTI 403
             F  L  Y   D   +          P             +   R+D   I   +  + +
Sbjct: 1414 RFTELFGYTLEDIPTLDDWREKAYPDPAYRREVIAQWDAALDNRRADTREIP--SAEYRV 1471

Query: 404  QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
                     +        +             +  + +  +  +     QL   +E    
Sbjct: 1472 TCKDGRIRDVLITGMTTEHGL------LACFVDITERKRFETHLAEREEQLRLFVEHAPA 1525

Query: 464  GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
             IA+ +R+   L+ +R     +      +L +       +        +  + L+  + +
Sbjct: 1526 AIAMFDRDMTYLAVSRRWIDDYKLDERAVLGRSHYEIFPEIPQRWKRIH-QQCLAGAIER 1584

Query: 524  TLEKITLGSTKEEKLLSLRIII--KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE 581
                  +      + +S  I                  D++  KQ +  +  AK  AE  
Sbjct: 1585 ADSDPFVRLDGNTQFVSWEIRPWLTPEGAIGGIVCFSEDVTLRKQAETAMLEAKNAAEAA 1644

Query: 582  SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
            +  KS+FLA +SHEIRTPL  ++G  +++ +       +    EYA    R+GN +  ++
Sbjct: 1645 NRAKSEFLANMSHEIRTPLNGLLGMLQLLHSTTL----DAEQEEYAQMAIRAGNRLTRLL 1700

Query: 642  NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILAD 700
            +D+LD+S+IE+G++ +   P  L   V         +  EKR+ +       +P  ++ D
Sbjct: 1701 SDILDLSRIEAGRLPIVAAPFRLANVVQALRETFAPFCKEKRLQLVFETEAALPEWLVGD 1760

Query: 701  LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN-----EEVILRVRDTGVGMTNYELEK 755
               ++QI  N++ NA+ F+ + G ++++ +           ++  V D G+G+ + +L+ 
Sbjct: 1761 ELRIRQILFNLVGNALKFS-TNGDVLVTMSRLPGVAAKHARILFTVADNGIGIPDDKLDS 1819

Query: 756  AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
              +PF Q   S     +G GLGL + K +VD   G   + S    GT   +  P+   S 
Sbjct: 1820 VCEPFIQAEGSYTRSQQGAGLGLTITKRLVDLMHGTMALESEAGVGTTAYVTLPVGLLSQ 1879



 Score =  130 bits (328), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 47/509 (9%), Positives = 128/509 (25%), Gaps = 43/509 (8%)

Query: 91   AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150
                   ++    +  G  A +++G  L  +     +                  +    
Sbjct: 1032 RDNTFLAVNPSFARERGYEAEELVGQPLFMLYPEAALPGLREHIAHADATGHELFEAMHM 1091

Query: 151  PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
              +G+   V +++  L                                R           
Sbjct: 1092 RKDGSTFPVLVEITVL--MDDEGRPQ--TRLAYCLDITRRKVVEQQLHRALAAAKAGTWE 1147

Query: 211  KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270
                ++      + +      P     +  S L   +    D         +  +E+ L 
Sbjct: 1148 WNLSTNENVWSPETYRLYELDPDRHPASYDSWLLSVHPDDRDRA-AHDVAEMARQEAPLA 1206

Query: 271  EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG----ENLTPETV 326
             +   +T +  +          ++       YL      +     +      E       
Sbjct: 1207 VEYRLNTHDGRERWLLSLGELQRDMHGTGTAYLGLVLDITERKRLERELHENEGRYRSLF 1266

Query: 327  DKCPIPF----FVYSHG------NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
            +           V           +   NP++  +        +     +  + +  +  
Sbjct: 1267 ESMNEGLCLLEMVRDPDGQPVDYRVLDVNPAYGRILGVAPDQAVGRL--VREIFNLKQAP 1324

Query: 377  DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
            + +   P++  R         A   ++         ++    +             +  +
Sbjct: 1325 NLDVYVPLLETRQP-------ATFESMLPELGKHFRVSAFALQGE-------RFVAMFQD 1370

Query: 437  DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
                   ++  E   ++   +   +   +  +++ G IL  NR  ++LFGY +EDI    
Sbjct: 1371 VTALWEARQAEERSALRFRELFGFSPLPMGYMDQHGRILDLNRRFTELFGYTLEDIPTLD 1430

Query: 497  FTVFLEQNTPSVMNHYLTEI------LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
                     P+     + +          D R+        + K+ ++  + I    +  
Sbjct: 1431 DWREKAYPDPAYRREVIAQWDAALDNRRADTREIPSAEYRVTCKDGRIRDVLITG--MTT 1488

Query: 551  SSCYSLTMHDISEWKQEKNKLSHAKKIAE 579
                     DI+E K+ +  L+  ++   
Sbjct: 1489 EHGLLACFVDITERKRFETHLAEREEQLR 1517



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/397 (9%), Positives = 100/397 (25%), Gaps = 19/397 (4%)

Query: 196  LGKRLDKKFSHLHEIKKGHSSVEKEKYDI---FSQQSPPPHLRMKNKVSSLTEYYAHKDD 252
              + L    +         +   +   ++      ++              TE      D
Sbjct: 758  RLRILRFTPTATQVFHLAQADQGRPLAEVKSQVQDETALAQAESTLTTGKETEAEVMHRD 817

Query: 253  VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
                 K            E       ++ +    +      N + E       R      
Sbjct: 818  GRIFLKRVFPFFGPQGDTEGVVMTYTDITKLKDAEEVLRRSNETLEGQVAARTRELEVAR 877

Query: 313  AYFDEGENLTPETVDKCPIPFFVYSH--GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
               +         +D+ P   ++           N +   + +     ++          
Sbjct: 878  QEAERRAVELEAIMDQAPAAVWITRDTEARTIIGNQASYHVLRMAPGSNVSKTLEGVPYR 937

Query: 371  DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
                  +    +  M   +         +   + +    S  +        N   E    
Sbjct: 938  ALRNGYELPLQELPMQRATRGE--HVIGQEVDLVFADGQSRTIFGNAAPLRNFLGEIYGA 995

Query: 431  NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPV 489
             G+  +    +  + +      +   + E +  G+ I+  R+   L+ N + ++  GY  
Sbjct: 996  VGVFLDITQLKSAQAEAL----RWQQLFERSEFGLVIVRVRDNTFLAVNPSFARERGYEA 1051

Query: 490  EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
            E+++ +P  +   +     +  ++    +           +   K+     + + I  L 
Sbjct: 1052 EELVGQPLFMLYPEAALPGLREHIAHADATGHEL---FEAMHMRKDGSTFPVLVEITVLM 1108

Query: 550  FSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKES 582
                          DI+  K  + +L  A   A+  +
Sbjct: 1109 DDEGRPQTRLAYCLDITRRKVVEQQLHRALAAAKAGT 1145



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/373 (6%), Positives = 84/373 (22%), Gaps = 36/373 (9%)

Query: 90   DAHG-----YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144
            D  G      + +++    + +G    + +G  + ++ ++      +    LL+ +    
Sbjct: 1281 DPDGQPVDYRVLDVNPAYGRILGVAPDQAVGRLVREIFNLKQAPNLDVYVPLLETRQPAT 1340

Query: 145  GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
             ++   P  G +  V                 G R   +        + R   +R   +F
Sbjct: 1341 FESM-LPELGKHFRVS-----------AFALQGERFVAMFQDVTALWEARQAEERSALRF 1388

Query: 205  SHLHEIKKGHSSVEKEKYDIFSQQSPPPH--------LRMKNKVSSLTEYYAHKDDVLKT 256
              L            +   I                 +   +               +  
Sbjct: 1389 RELFGFSPLPMGYMDQHGRILDLNRRFTELFGYTLEDIPTLDDWREKAYPDPAYRREVIA 1448

Query: 257  EKYPLLTSEESSLPEQE--DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
            +    L +  +   E    ++     +   +      +         ++          +
Sbjct: 1449 QWDAALDNRRADTREIPSAEYRVTCKDGRIRDVLITGMTTEHGLLACFVDITERKRFETH 1508

Query: 315  FDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
              E E      V+  P    ++         +  ++   K      +  +          
Sbjct: 1509 LAEREEQLRLFVEHAPAAIAMFDRDMTYLAVSRRWIDDYKLDERAVLGRS--------HY 1560

Query: 374  KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
            ++      +   +++         A          N+  +++                  
Sbjct: 1561 EIFPEIPQRWKRIHQQCLAGAIERADSDPFVRLDGNTQFVSWEIRPWLTPEGAIGGIVCF 1620

Query: 434  EPEDVDTRINKRK 446
              +    +  +  
Sbjct: 1621 SEDVTLRKQAETA 1633



 Score = 41.9 bits (97), Expect = 0.45,   Method: Composition-based stats.
 Identities = 17/276 (6%), Positives = 61/276 (22%), Gaps = 25/276 (9%)

Query: 57   QNQESVSNTNYLDSENTFVFDP--IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM- 113
            Q+  ++      +  +   F        +   + +D HG + +++    +  G     + 
Sbjct: 1369 QDVTALWEARQAEERSALRFRELFGFSPLPMGY-MDQHGRILDLNRRFTELFGYTLEDIP 1427

Query: 114  IGMRLCDVSDILHIDPNNHIGD---LLKRQNTWYGKT-----TLWPIEGTNLYVPIDLAA 165
                  + +          I      L  +     +       +   +G    V I    
Sbjct: 1428 TLDDWREKAYPDPAYRREVIAQWDAALDNRRADTREIPSAEYRVTCKDGRIRDVLITG-- 1485

Query: 166  LPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF 225
              + + +   + F                      +++     E      ++        
Sbjct: 1486 --MTTEHGLLACFV------DITERKRFETHLAEREEQLRLFVEHAPAAIAMFDRDMTYL 1537

Query: 226  SQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT---SEESSLPEQEDFHTINLNQ 282
            +           ++ + L   +      +      +     +      + + F  ++ N 
Sbjct: 1538 AVSRRWIDDYKLDERAVLGRSHYEIFPEIPQRWKRIHQQCLAGAIERADSDPFVRLDGNT 1597

Query: 283  YTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
                                +      +L    +  
Sbjct: 1598 QFVSWEIRPWLTPEGAIGGIVCFSEDVTLRKQAETA 1633


>gi|240850171|ref|YP_002971564.1| two-component sensor histidine kinase [Bartonella grahamii as4aup]
 gi|240267294|gb|ACS50882.1| two-component sensor histidine kinase [Bartonella grahamii as4aup]
          Length = 773

 Score =  355 bits (912), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 123/506 (24%), Positives = 223/506 (44%), Gaps = 53/506 (10%)

Query: 342 FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401
            Y + +   +  Y   D +     +S +++    +  +  + +M  +     I       
Sbjct: 285 VYWSRAMYEMLGYVPQDALLSISQISAIINPNDANFFDLAQELMSGKKKHIDINV----- 339

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
            ++    + + M         + P      GI  +  + +    +     +++   +E  
Sbjct: 340 PMRHADGHYVWMRIRAEVTEEEEP---HLVGISFDISEQQQLAEQTAQADLRIRDAIENI 396

Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
           S+   + + EG ++ +N    +    P + +        +E      ++ Y  +      
Sbjct: 397 SESFVLWDSEGRLVMSNSKFCEYAAIPKQILQSGIQRATVEAMARPAISEYPLKDDGTG- 455

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK----------- 570
                  ++  T +   L +    ++            DISE KQ++ K           
Sbjct: 456 ----NLTSIRQTADGCWLKIN---ERRTQDGGLVCIGTDISELKQQQEKFEDSERRLFSF 508

Query: 571 ------------------------LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
                                   L   K+ AE  +  KS+FLA +SHE+RTPL AI+GF
Sbjct: 509 IQELKRARGSAQQRASEVEKLNKSLKAEKERAESANKAKSEFLANMSHELRTPLNAILGF 568

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
           S+++    FGPLG+ RY EY + I  SG  +L ++ND+LD+SKIE+G+ +L  +   L+ 
Sbjct: 569 SDIMLQSTFGPLGSQRYKEYMHDIYNSGTHLLTLINDILDMSKIEAGRFSLDCKNTDLEP 628

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726
            +SEA+  +   A EK I++ T+    +     D R++KQI LN++SNA+ FTPSGG I 
Sbjct: 629 IISEAVRTLTPQAQEKNIVVTTNITPEL-HAEVDGRAMKQIFLNLISNAVKFTPSGGNID 687

Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
           +         +I ++ DTGVG+    ++K  +PF Q+ N       G+GLGL +++++++
Sbjct: 688 V-CAFKKKNNLIFKITDTGVGIPQSAIKKLGQPFEQVENQLTKSHTGSGLGLAISRSLLE 746

Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLYD 812
            + GK  I S   KGT + II P+  
Sbjct: 747 LHKGKLEITSKEMKGTTVTIIMPITQ 772


>gi|256829012|ref|YP_003157740.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256578188|gb|ACU89324.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 1044

 Score =  355 bits (912), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 112/663 (16%), Positives = 232/663 (34%), Gaps = 48/663 (7%)

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS-------PPPHLRMKNKV 240
           R     R    R ++K+ ++             K  I                  +    
Sbjct: 263 RQLAQEREALARSEEKWRNILVHTPQIGISLDPKGRIVFANEYFLKLTGWEQEEVLGRDW 322

Query: 241 SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE-DFHTINLNQYTKKQYFGTLQNNSKES 299
             +      ++   +     +   +  +    E +    N  ++T         ++S   
Sbjct: 323 FEVCIPVEIRESTREFFDSVMAGGQSLAYSTHENEIIGKNGARHTIGWANAVAFDSSGLP 382

Query: 300 FEY----LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKY 354
            +     +        +    E  NL    VD  P+    +   G + Y N   +     
Sbjct: 383 TDVTSLGVDLTERKHAAEVLVESRNLYQSLVDNLPLSIMTFDRDGKINYINQFHIDSFAK 442

Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
             +D       L   L       +  I P +        ++  + L   +     S   +
Sbjct: 443 GRLD---KEYFLGRALHELPGLVSAGIGPELKEVLQGRPVSLPS-LFIPRLAAGGSAWQS 498

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGI 473
                             +  +    ++++  +     +L   LE T+DG+   +   G 
Sbjct: 499 VKAIPLFK-DGIFSGGILMREDITARKMSEEAVRQSEERLALALEVTNDGLWDWDCVSGS 557

Query: 474 ILSTNRAVSKLFGYPVED--ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
               +     + GY   +       +   +  +    +   ++  ++    Q  E     
Sbjct: 558 -TYFSPHYYAMLGYEPGEFEANYATWRSLIHPDDVLAVEDEVSRHVASG--QVFEIEFRM 614

Query: 532 STKEEKLLSLRIIIKKLPFSS-----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
            +K  +   +    + +             T  D++E K  +     AK+ AE  +  KS
Sbjct: 615 KSKSGQWQWIMARGRVVEKDEQDHAVRMVGTHVDVTERKNAEYVALRAKEAAEAANRAKS 674

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
           +FLA +SHEIRTPL  I+G  ++++        N   +EY++   +S + +  +++D+LD
Sbjct: 675 EFLANMSHEIRTPLNGIMGMLQLLQTTSL----NHEQLEYSSMAVQSTSRLTSLLSDILD 730

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVK 705
           +S++E+GKM +  E   L + + ++I L    A +  + +R  F + +P+ ++ D   ++
Sbjct: 731 LSRVEAGKMPIRPEVFDLRKKLHQSIDLFASIALQSGVELRHHFDDTLPQHVIGDPLRLQ 790

Query: 706 QIALNILSNAIHFTPSGGQIIIST-----THTSNEEVILRVRDTGVGMTNYELEKAMKPF 760
           Q+  N++ NA  FT  G  + +        + +   +   V D+G G+ +  L    +PF
Sbjct: 791 QVLTNLIGNAFKFTERGF-VSVEAYPLPARNENQLRIFFEVSDSGCGIPDEALGLLFEPF 849

Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL--IEII------FPLYD 812
            Q+      + +G GLGL + K +V    G   I S    GT     +        P  D
Sbjct: 850 SQVSQGYTRQYQGAGLGLSICKRLVGLMGGNMAISSEVGVGTSIYFCVTLDKALKLPAQD 909

Query: 813 TSH 815
           +S 
Sbjct: 910 SSA 912



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/301 (11%), Positives = 82/301 (27%), Gaps = 11/301 (3%)

Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSF 348
              ++   K  ++ L  +      A     E      V    I   +   G + +AN  F
Sbjct: 247 LALVRFALKRPYQTLFRQLAQEREALARSEEKWRNILVHTPQIGISLDPKGRIVFANEYF 306

Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
           L LT ++  + +        +   P     +  +      +    +A S   + I     
Sbjct: 307 LKLTGWEQEEVLGRDWFEVCI---PVEIRESTREFFDSVMAGGQSLAYSTHENEIIGKNG 363

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468
               + +      +          +  +  + +     +        S+++     I   
Sbjct: 364 ARHTIGWANAVAFDSSGLPTDVTSLGVDLTERKHAAEVLVESRNLYQSLVDNLPLSIMTF 423

Query: 469 NREGIILSTNRAVSKLF---GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
           +R+G I   N+     F       E  L +     L     + +   L E+L      +L
Sbjct: 424 DRDGKINYINQFHIDSFAKGRLDKEYFLGRAL-HELPGLVSAGIGPELKEVL-QGRPVSL 481

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKES 582
             + +            +    L          L   DI+  K  +  +  +++      
Sbjct: 482 PSLFIPRLAAGGSAWQSVKAIPLFKDGIFSGGILMREDITARKMSEEAVRQSEERLALAL 541

Query: 583 S 583
            
Sbjct: 542 E 542



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/379 (9%), Positives = 88/379 (23%), Gaps = 21/379 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNTWYGK 146
           +D  G +   +E   K  G    +++G    +V   + I  +       ++    +    
Sbjct: 293 LDPKGRIVFANEYFLKLTGWEQEEVLGRDWFEVCIPVEIRESTREFFDSVMAGGQSLAYS 352

Query: 147 TTLWPIEGT-NLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           T    I G       I  A    +  +   +     G+            +       + 
Sbjct: 353 THENEIIGKNGARHTIGWANAVAFDSSGLPTDVTSLGV--DLTERKHAAEVLVESRNLYQ 410

Query: 206 HLHEIKKGHSSVEKEKYDI-----FSQQSPPPHLRMKNKVSSLTEYYAHK--DDVLKTEK 258
            L +              I     F   S       K        +         +  E 
Sbjct: 411 SLVDNLPLSIMTFDRDGKINYINQFHIDSFAKGRLDKEYFLGRALHELPGLVSAGIGPEL 470

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL---SHRNHPSLSAYF 315
             +L     SLP              +      L  +   S   L               
Sbjct: 471 KEVLQGRPVSLPSLFIPRLAAGGSAWQSVKAIPLFKDGIFSGGILMREDITARKMSEEAV 530

Query: 316 DEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
            + E      ++      + +       Y +P +  +  Y+  +         +L+    
Sbjct: 531 RQSEERLALALEVTNDGLWDWDCVSGSTYFSPHYYAMLGYEPGEFEANYATWRSLIHPDD 590

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
           +        V  + +         R+     + +    M      + ++    +   G  
Sbjct: 591 V--LAVEDEVSRHVASGQVFEIEFRM--KSKSGQWQWIMARGRVVEKDEQDHAVRMVGTH 646

Query: 435 PEDVDTRINK-RKMEIEVM 452
            +  + +  +   +  +  
Sbjct: 647 VDVTERKNAEYVALRAKEA 665


>gi|39934628|ref|NP_946904.1| sensor histidine kinase [Rhodopseudomonas palustris CGA009]
 gi|39648477|emb|CAE26999.1| sensor histidine kinase with multiple PAS/PAC and a response
           regulator receiver domain [Rhodopseudomonas palustris
           CGA009]
          Length = 903

 Score =  355 bits (912), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 111/598 (18%), Positives = 232/598 (38%), Gaps = 47/598 (7%)

Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
            L      + +    +       H +++               S      L    +    
Sbjct: 41  SLSVMAGRIASQHTRAWEPPGVGHGLDVP--WWIFVISLAVGLSIAGLIELQLSRYER-R 97

Query: 313 AYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
                 +      V+         S  G +   N +   L  Y +   I      + L+ 
Sbjct: 98  NAHKLRQAHLAAIVEGSSYAIVGQSIDGTVLSWNKTAERLFGYTAEQAIGQN--ATELMV 155

Query: 372 APKLSDNN-------------AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
              L D               A       R++ T +  +  +  I+ +    + M     
Sbjct: 156 PDDLRDEEQQMLSGISDGTAFAYLWTKRKRANGTLVDVAVSISPIRADDGRLIGMAASMR 215

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKR--KMEIEVMQLCSILEATSDGIAIINREGIILS 476
           +  +   +   +       ++ ++ +R  ++E  +    +ILE  +  +   +  G I  
Sbjct: 216 DITD-LVQAEREVHDLNAALERQVAERTCQLEKTLTLQTAILERAAYAVIATDVTGTITL 274

Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL---TEILSLDLRQTLEKITLGST 533
            N A  ++ GY  ED++ +   +    +              I        L+     + 
Sbjct: 275 FNPAAERMLGYKAEDLIGRASAMLFHDSDELAARAEAMRKEGISVSSNLGVLQARLARND 334

Query: 534 KE----------EKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAE 579
            +             +  R+ + +L   +           D++E  + +++L  A+  AE
Sbjct: 335 PDTAMWTYIDAMGNRIPTRLTLSRLRTKTGVNLGVLGIAVDLTEQLKYEDELKAARASAE 394

Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639
           + S+ K+DFLA +SHEIRTPL  IIG+++++           R       I  + + +  
Sbjct: 395 QASAAKADFLANMSHEIRTPLNGIIGYADLVLEDETLAPDTRRQ---VMRIFEASDSLRV 451

Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA 699
           I++D+LD SKIE+  + L  +P+ ++E ++   S+++  A+EK + +  +     P ++ 
Sbjct: 452 IIDDILDFSKIEACGLTLESKPLYINELIANCASIIEPKADEKGLKLIATAQATPPVLIG 511

Query: 700 DLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNE--EVILRVRDTGVGMTNYELEKA 756
           D   ++Q+ LN+++NA+ FT +G  ++I+S     +    + + V DTG+G++    +  
Sbjct: 512 DAGRLRQVLLNLMNNAVKFTTAGSVELIVSCIGRVDHLVRLRISVADTGIGISPEAQKGL 571

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL--IEIIFPLYD 812
            K F Q   +   +  GTGLGL +++ +V A  G+  I S P  G+    E+  P+ +
Sbjct: 572 FKRFSQADETISRKFGGTGLGLAISQRIVQAMHGELKIDSQPGVGSTFYFEVELPVAE 629



 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/279 (7%), Positives = 61/279 (21%), Gaps = 41/279 (14%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI-DPNNHIGDLLKRQNTWYGKTTLW 150
            G +   ++   +  G  A + IG    ++     + D    +   +     +    T  
Sbjct: 124 DGTVLSWNKTAERLFGYTAEQAIGQNATELMVPDDLRDEEQQMLSGISDGTAFAYLWTKR 183

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA----LGKRLDK---- 202
                 L V + ++  PI + +    G      +               L   L++    
Sbjct: 184 KRANGTL-VDVAVSISPIRADDGRLIGMA--ASMRDITDLVQAEREVHDLNAALERQVAE 240

Query: 203 ----------KFSHLHEIKKGHSSVEKEKYDIFSQQSPPP---HLRMKNKVSSLTEYYAH 249
                       + + E              I             + ++ +   +    H
Sbjct: 241 RTCQLEKTLTLQTAILERAAYAVIATDVTGTITLFNPAAERMLGYKAEDLIGRASAMLFH 300

Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDFHTINLN----------------QYTKKQYFGTLQ 293
             D L      +     S                              +   +     L+
Sbjct: 301 DSDELAARAEAMRKEGISVSSNLGVLQARLARNDPDTAMWTYIDAMGNRIPTRLTLSRLR 360

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP 332
             +  +   L      +    +++       + ++    
Sbjct: 361 TKTGVNLGVLGIAVDLTEQLKYEDELKAARASAEQASAA 399



 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/368 (9%), Positives = 77/368 (20%), Gaps = 39/368 (10%)

Query: 80  PRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR 139
            R        D  G +   +    + +G  A  +IG     +      D      + +++
Sbjct: 257 ERAAYAVIATDVTGTITLFNPAAERMLGYKAEDLIGRASAMLFH--DSDELAARAEAMRK 314

Query: 140 QNTWYG---------------KTTLW-PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI 183
           +                     T +W  I+     +P  L    + ++     G  G  +
Sbjct: 315 EGISVSSNLGVLQARLARNDPDTAMWTYIDAMGNRIPTRLTLSRLRTKTGVNLGVLGIAV 374

Query: 184 VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL 243
                         K            K    +           ++P   +     +   
Sbjct: 375 --DLTEQLKYEDELKAARASAEQASAAKADFLANMSH-----EIRTPLNGIIGYADLVLE 427

Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303
            E  A          +    S    + +  DF  I     T +     +          +
Sbjct: 428 DETLAPDTRRQVMRIFEASDSLRVIIDDILDFSKIEACGLTLESKPLYINELIANCASII 487

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYA-----NPSFLLLTKYKSVD 358
             +                     +   P  +   G L        N +    T      
Sbjct: 488 EPKADEKGLKLIATA---------QATPPVLIGDAGRLRQVLLNLMNNAVKFTTAGSVEL 538

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
            +   G +  L+       +  I      +       + A     +      L +     
Sbjct: 539 IVSCIGRVDHLVRLRISVADTGIGISPEAQKGLFKRFSQADETISRKFGGTGLGLAISQR 598

Query: 419 EKANQFPE 426
                  E
Sbjct: 599 IVQAMHGE 606


>gi|117925226|ref|YP_865843.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117608982|gb|ABK44437.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 791

 Score =  355 bits (911), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 93/368 (25%), Positives = 161/368 (43%), Gaps = 14/368 (3%)

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
            E  ++   +E +   + I + +G I   N    +L GY  +++L K   +         
Sbjct: 242 EEYAKIFRAVEQSPASVVITDAQGNIEYVNPKFCQLTGYSAQEVLGKNPRLLKSGEMSPN 301

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEW 564
               L   ++  L            +   L      I  +         +     DI+  
Sbjct: 302 FYRDLWHTVTTGLEW--HGEFYNRAQNGSLFWEAASISAIRSEQGKITHFVAVKDDITAR 359

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           K+ + +L  A+  AE  +  KS+FLA +SHEIRTP+ AI+G SE++              
Sbjct: 360 KKLERELQQARDRAESSNRAKSEFLALMSHEIRTPMNAILGMSELLAESNLSG----EQR 415

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           E      R+   +LD++ND+LD+S++ESG++ L   P+ L +   E   L +  A +K +
Sbjct: 416 ELLTVQRRAALALLDLINDILDLSRVESGRLELDHAPMHLPDFFIEIQDLFRQQAIKKNL 475

Query: 685 LIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVI--LR 740
               +  +++P+   AD   ++Q+ +N++ NAI FT  GG  I +       E V     
Sbjct: 476 AFSITLEDDLPKTYFADRARLRQVMINLVGNAIKFTQQGGVWISVERLSQQGEMVKLKFS 535

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V D+G G+ +    +  +PF Q          GTGLGL +++ +V    G   + STP +
Sbjct: 536 VVDSGCGIPSEAQSQIFEPFTQADAYVTRHHGGTGLGLTISQRLVQLFGGTLQVESTPNQ 595

Query: 801 GTLIEIIF 808
           G+    I 
Sbjct: 596 GSRFSFIL 603



 Score = 67.7 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 32/334 (9%), Positives = 87/334 (26%), Gaps = 24/334 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLC-----DVSDILHIDPNNHIGDLLKRQNTW 143
            DA G ++ ++ +  +  G  A +++G         ++S   + D    +   +     W
Sbjct: 261 TDAQGNIEYVNPKFCQLTGYSAQEVLGKNPRLLKSGEMSPNFYRD----LWHTVTTGLEW 316

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
           +G+       G+        +   I S   + + F    +              ++   +
Sbjct: 317 HGEFYNRAQNGSLF--WEAASISAIRSEQGKITHF--VAVKDDITARKKLERELQQARDR 372

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
               +  K    ++   +              +     S  +                L 
Sbjct: 373 AESSNRAKSEFLALMSHEIRTPMNAILGMSELLAESNLSGEQRELLTVQRRAALALLDLI 432

Query: 264 SEESSLPEQEDFH-TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
           ++   L   E     ++        +F  +Q+  ++     +     +L     +     
Sbjct: 433 NDILDLSRVESGRLELDHAPMHLPDFFIEIQDLFRQQAIKKNLAFSITLEDDLPKTYFAD 492

Query: 323 PETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
              + +      +   GN             + SV+ +   G +  L  +   S      
Sbjct: 493 RARLRQ----VMINLVGNAIKFTQQG---GVWISVERLSQQGEMVKLKFSVVDSGCGIPS 545

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
                  +       A  +  + +    L +T  
Sbjct: 546 EAQSQIFEPFT---QADAYVTRHHGGTGLGLTIS 576



 Score = 58.1 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 16/134 (11%), Positives = 40/134 (29%), Gaps = 8/134 (5%)

Query: 324 ETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
             V++ P    +    GN+ Y NP F  LT Y + + +    G +  L        N  +
Sbjct: 249 RAVEQSPASVVITDAQGNIEYVNPKFCQLTGYSAQEVL----GKNPRLLKSGEMSPNFYR 304

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
            +    +                   +            ++  +      ++ +    + 
Sbjct: 305 DLWHTVTTGLEWHGEFYNRA---QNGSLFWEAASISAIRSEQGKITHFVAVKDDITARKK 361

Query: 443 NKRKMEIEVMQLCS 456
            +R+++    +  S
Sbjct: 362 LERELQQARDRAES 375


>gi|298245291|ref|ZP_06969097.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297552772|gb|EFH86637.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 852

 Score =  355 bits (911), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 107/731 (14%), Positives = 231/731 (31%), Gaps = 46/731 (6%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKR---QNTWYGK 146
             G + +I+E           ++IG  L +           + +   + R     T   +
Sbjct: 151 PEGIVLDINEVPLDDAQVRREEVIGKPLAETPWWSFAPASQSRLRAAIARASTGETVRFE 210

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
             L P EG  + +  +    P    + +       GI                L      
Sbjct: 211 AQLCPREG--MLLSFESVITPHLDADHQIEYLVIAGI--DITARKRAERDIHALIDAIPQ 266

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
           L    +    V+                   +    +   +      +       + +  
Sbjct: 267 LVWTGRPDGYVDSYNQRWLDYTGLTTAQAQGDGW--MQCTHPADRQRVLETWQSAVQTGR 324

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE-- 324
               EQ    +               ++      +Y+S            +    + E  
Sbjct: 325 PYETEQRLLQSTTGEYRWFLMQAVPFKDAQGTILKYVSTCTDIDEQKRAQQQLKTSEENW 384

Query: 325 --TVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
               +  P   +      L  Y +  +   T       +       +    P    +   
Sbjct: 385 RVLAETVPQLVWTTLPDGLVEYWSQRWYAYTGSSFEHALGHE---WSQFLHPDEYQHTLT 441

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
                + +  T           +                 ++  + +   G   +  + +
Sbjct: 442 VW---HHALETGKPYEIEYRLKEGQTGEYRWFLARGMPVRDEAGQIVKWFGTCTDIDEHK 498

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK--PFTV 499
             +  +     +   ++ +   GI + +    I+  N    ++ GY  ED+  +   +  
Sbjct: 499 RMEEALRESQARASVLMNSNIIGIFV-DEGEQIVDANDTFLRMTGYTREDLRERCMNWVH 557

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-CYSLTM 558
                  +       E+ +       EK  +   K+   L + +    L          +
Sbjct: 558 MTPPEYQARTQQAHQELAAQQSMTPYEKEYMC--KDGSRLPVLVCGVVLQHHPLQMIAFV 615

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            D S  K+ + +              K  F++  SHE+R PLTA+   ++ +  +R    
Sbjct: 616 LDNSARKELEQR--------------KDGFISMASHELRNPLTALKMQAQ-LVRKRLEKQ 660

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
           G        + ++     +  ++ +LLD+SKI++G++    E V LD  + E    +Q  
Sbjct: 661 GLNGAAAALSGVEGPVKQLERLIGELLDVSKIQAGRLEYRQETVDLDALLHEVADTMQQI 720

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738
                I++R +   ++   + D   + Q+ +N+LSNAI ++P+   + I  + TS E V 
Sbjct: 721 HTTHTIVVRGAAPCSL---VGDKDRLGQVFINLLSNAIKYSPAAETVEIDLS-TSRETVT 776

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           +RVRD G G+   + +K  + F +    +Q    G G+GL + + +V  + G   + S  
Sbjct: 777 VRVRDHGFGIPREQRDKVFERFYRAAGPKQKAIPGLGMGLYIVEEIVKRHGGTITVDSEV 836

Query: 799 AKGTLIEIIFP 809
            KG+   +  P
Sbjct: 837 GKGSTFTVTLP 847



 Score =  118 bits (296), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 53/508 (10%), Positives = 127/508 (25%), Gaps = 49/508 (9%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNT------- 142
           DA   ++ ++      IG    +++G      +    +   +    + K + T       
Sbjct: 34  DAE-TIRYVNTRAQTMIGASREQLLGNPFWRGAPQ--LVSPSLYQAVRKTRQTQEPTEVE 90

Query: 143 -WYGKTTLW------PIEGTNLYVPIDLAA-LPIYSRNREFSGFRGFGIVHVNRVDNDPR 194
            W   T  W      P  G       +++A  P       F   +G  +   +      R
Sbjct: 91  YWSPMTRNWLHAQLTPTVGGLTLQFHEMSAPTPCQE---TFP--QGERLCIDDLDGLHTR 145

Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254
                 +     ++E+    + V +E+         P         S L    A      
Sbjct: 146 IGILTPEGIVLDINEVPLDDAQVRREEVIGKPLAETPWWSFAPASQSRLRAAIAR----- 200

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
                    S   ++  +           + +       +   +    +      +    
Sbjct: 201 --------ASTGETVRFEAQLCPREGMLLSFESVITPHLDADHQIEYLVIAGIDITARKR 252

Query: 315 FDEGENLTPETVDKCPIPFFVYSHGNLFY-ANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
            +         +D  P   +           N  +L  T   +    +  G +     A 
Sbjct: 253 AE---RDIHALIDAIPQLVWTGRPDGYVDSYNQRWLDYTGLTTAQA-QGDGWMQCTHPAD 308

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
           +       +  +                 +Q                 +     +     
Sbjct: 309 RQRVLETWQSAVQTGR-----PYETEQRLLQSTTGEYRWFLMQAVPFKDAQGTILKYVST 363

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
             +  + +  +++++        + E     +     +G++   ++      G   E  L
Sbjct: 364 CTDIDEQKRAQQQLKTSEENWRVLAETVPQLVWTTLPDGLVEYWSQRWYAYTGSSFEHAL 423

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLRIIIKKLPFSS 552
              ++ FL  +            L       +E     G T E +    R +  +     
Sbjct: 424 GHEWSQFLHPDEYQHTLTVWHHALETGKPYEIEYRLKEGQTGEYRWFLARGMPVRDEAGQ 483

Query: 553 C--YSLTMHDISEWKQEKNKLSHAKKIA 578
              +  T  DI E K+ +  L  ++  A
Sbjct: 484 IVKWFGTCTDIDEHKRMEEALRESQARA 511



 Score =  102 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 30/372 (8%), Positives = 87/372 (23%), Gaps = 21/372 (5%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD-LLKRQNTW 143
             W     GY+   ++      G    +  G      +               ++    +
Sbjct: 267 LVWTGRPDGYVDSYNQRWLDYTGLTTAQAQGDGWMQCTHPADRQRVLETWQSAVQTGRPY 326

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +  L     T  Y    + A+P          +               +   K  ++ 
Sbjct: 327 ETEQRLLQST-TGEYRWFLMQAVPFKDAQGTILKY--VSTCTDIDEQKRAQQQLKTSEEN 383

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQS---PPPHLRMKNKVSSLTEYYAHKDDVL--KTEK 258
           +  L E              +               ++ +      + H D+     T  
Sbjct: 384 WRVLAETVPQLVWTTLPDGLVEYWSQRWYAYTGSSFEHALGHEWSQFLHPDEYQHTLTVW 443

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP----SLSAY 314
           +  L + +    E                    +++ + +  ++            +   
Sbjct: 444 HHALETGKPYEIEYRLKEGQTGEYRWFLARGMPVRDEAGQIVKWFGTCTDIDEHKRMEEA 503

Query: 315 FDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
             E +      ++   I  FV     +  AN +FL +T Y   +D+         +  P+
Sbjct: 504 LRESQARASVLMNSNIIGIFVDEGEQIVDANDTFLRMTGYTR-EDLRERCMNWVHMTPPE 562

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
                  +      + ++          +  +      +              +      
Sbjct: 563 Y-QARTQQAHQELAAQQSMTPYEKEY--MCKDGSRLPVLVCGVVL----QHHPLQMIAFV 615

Query: 435 PEDVDTRINKRK 446
            ++   +  +++
Sbjct: 616 LDNSARKELEQR 627



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 18/166 (10%), Positives = 40/166 (24%), Gaps = 5/166 (3%)

Query: 55  TDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI 114
           TD +++  +      SE  +         +  W     G ++  S+      G+     +
Sbjct: 365 TDIDEQKRAQQQLKTSEENWRVLAETVP-QLVWTTLPDGLVEYWSQRWYAYTGSSFEHAL 423

Query: 115 GMRLCDVSDILHIDPNNHIGD-LLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNR 173
           G                 +    L+    +           T  Y       +P+     
Sbjct: 424 GHEWSQFLHPDEYQHTLTVWHHALETGKPYE-IEYRLKEGQTGEYRWFLARGMPVRDEAG 482

Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEK 219
           +    + FG               +    + S L         V++
Sbjct: 483 QIV--KWFGTCTDIDEHKRMEEALRESQARASVLMNSNIIGIFVDE 526



 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/277 (11%), Positives = 69/277 (24%), Gaps = 28/277 (10%)

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIA 363
                                ++  P   F V     + Y N     +        +   
Sbjct: 1   MSRIKRTERLTPASSETLLHMLETLPDALFLVNDAETIRYVNTRAQTMIGASREQLLGNP 60

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
                    P+L   +  + V   R  +             W+      +          
Sbjct: 61  FWRGA----PQLVSPSLYQAVRKTRQTQEPTEVE------YWSPMTRNWLHAQLTPTVGG 110

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
                 +        +T     ++ I+       L+     I I+  EGI+L  N     
Sbjct: 111 LTLQFHEMSAPTPCQETFPQGERLCIDD------LDGLHTRIGILTPEGIVLDINEVPLD 164

Query: 484 LFGYPVEDILRKPF----TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
                 E+++ KP            + S +   +    +    +T+        +E  LL
Sbjct: 165 DAQVRREEVIGKPLAETPWWSFAPASQSRLRAAIARASTG---ETVRFEAQLCPREGMLL 221

Query: 540 SLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLS 572
           S   +I     +        +   DI+  K+ +  + 
Sbjct: 222 SFESVITPHLDADHQIEYLVIAGIDITARKRAERDIH 258


>gi|78223890|ref|YP_385637.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter
           metallireducens GS-15]
 gi|78195145|gb|ABB32912.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter
           metallireducens GS-15]
          Length = 589

 Score =  355 bits (911), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 125/579 (21%), Positives = 226/579 (39%), Gaps = 31/579 (5%)

Query: 231 PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG 290
               +     + LT   AH+D     +  P + +  S      +            +  G
Sbjct: 38  AEIRQNLATEARLTRMIAHRDIGRMKDDAPAVAAAISR-----ETRARVTIILAGGEVVG 92

Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFL 349
             +    +  E  +H N P +      G   +         P   V            F+
Sbjct: 93  DSEIAPGQLKELENHLNRPEVQQALKSGSGESIRYSATIKTPMLYVAVPLQTAGGEEGFV 152

Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
            L+    +  +E A G    L    L+ +  +  V+ Y   R    +   +  +      
Sbjct: 153 RLS--LPLTALEKAEGSIRTLLGASLAVSLLVALVLSYILSRVTSRSLRTITALAKQIGK 210

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469
                 IP    ++  E           ++ ++ +     E  +L +IL    +G+ + +
Sbjct: 211 GNFNRRIPVPTRDEVGELARVMNDMAARIEQQLERTSA--EKNRLDTILRGMGEGLMVTD 268

Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
             G+I   N A   LF    E +  +     +E     V+N     I++    +  EK+T
Sbjct: 269 ANGLITLVNPAFLGLFSLN-ESVEGRHI---IEIARHPVLNDAFKAIVASGDERV-EKMT 323

Query: 530 LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
           L   +E+ +L+  + +             HDI++  + +              + + DF+
Sbjct: 324 LTMGEEKHVLTHWVPLVDNGELQGVVAVFHDITDLTRLE--------------NIRRDFV 369

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
           A VSHE+RTP+T I G++E + +         R  ++   I      +  ++ DLL +S+
Sbjct: 370 ANVSHELRTPVTVIKGYAEALIDGAMET-DPERARKFVGIILSHSERLAALIGDLLTLSQ 428

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709
           +E+G MNL    V  ++    A+ L+Q  A  K I I  S  +    +LAD   ++Q+ +
Sbjct: 429 LEAGSMNLEKTTVRPEQVAKRAMELLQPKAARKGITIDCSGLSGAQSVLADPGRLEQVLV 488

Query: 710 NILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
           N+L NAI +TP GG I  S     N  V + V+DTGVG+   +L +  + F ++  ++  
Sbjct: 489 NLLDNAIKYTPEGGAISFSAAVKEN-MVRIGVKDTGVGIPPKDLPRIFERFYRVDTARSR 547

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
              GTGLGL + K +V  + G   + S P KG+      
Sbjct: 548 DEGGTGLGLSIVKHIVQLHGGAVGVESEPGKGSEFWFTI 586


>gi|298241118|ref|ZP_06964925.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297554172|gb|EFH88036.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 938

 Score =  355 bits (911), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 107/733 (14%), Positives = 237/733 (32%), Gaps = 49/733 (6%)

Query: 91  AHGYLKEISEE-LPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK-------RQNT 142
             G + EI++  L  ++     +++G    +         +  +   L        R  +
Sbjct: 222 PEGLVLEINQRPLADSLCQR-EEVVGKPFIE---TPWWSYDPAVQQQLHTAIEQASRGKS 277

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
            + +  + P EG   Y+ + +   P    +         G            A    L  
Sbjct: 278 VHFEARIHPQEG--WYLDLTVTMTPHLDADGHVEYLIYAG--RDITARKRAEAELHALVD 333

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
                    +    ++          S    +        +   +      ++       
Sbjct: 334 AIPQQVWTIRPDGYLDYCNQRWLDYTS--LSIEQAQGDGWIQCLHPDDRQRIQDAWQMSR 391

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD----EG 318
            +      EQ   H +             +++ + +  ++             +    E 
Sbjct: 392 KTGMPFETEQRLRHGMTGTYRWFLVRALPVRDETGQIIKWFGTSTDIEEQKRAEQKLKES 451

Query: 319 ENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
           E       +  P   +V    G   Y N  +   T    ++ I+           P   +
Sbjct: 452 EERFRLLAETVPQVVWVARPDGQHEYTNQHWCDYTGLT-LEQIQSDRWAQLPFFHPDDRE 510

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
           +   +                RL   Q                 ++  + +   G   + 
Sbjct: 511 DRQAR-WQHALDTGAMYEHEGRLRNGQT--GEYRWFLTRGVPMRDEAGQIVKWFGTSTDI 567

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
            + +  +  +     +   ++ +   GI II  E  I+  N     + GY  ED+     
Sbjct: 568 EEQKRTEEALRQSQKRASVLMNSNMIGINIIEGE-QIVDANDTFLHMTGYTREDLRAGRL 626

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY-SL 556
              +    P  +         L  +Q++        K+   L + +    L         
Sbjct: 627 NW-MRMTLPEYLARTRQAHQELAAQQSITYEKEYVCKDGSRLPVLVCGVVLQHHPFQGIA 685

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            + D S  K+ + +              K  F++  SHE+R PL ++   ++ +  +R  
Sbjct: 686 FILDNSARKELEQR--------------KDSFISMASHELRNPLASLKMQTQ-LVRKRLE 730

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
              +       + ++     +  ++ +LLD+SKI++G++    E V LD  + E    +Q
Sbjct: 731 KQTHHEAAALLSRVEGPVKQLERLIGELLDVSKIQAGRLEYLQETVDLDALLHEVADTMQ 790

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
             +    I++R +   ++   + D   + Q   N+LSNAI ++P    + +  + ++   
Sbjct: 791 QLSPTHTIVVRGAVPCSL---VGDKDRLWQAFTNLLSNAIKYSPDAETVEMDLSASAEI- 846

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           V++RVRD G+G+   + +K    F ++   +Q    G G+GL +   +V A+ G   + S
Sbjct: 847 VMIRVRDHGLGIPREQCDKIFDRFYRVSGPRQRAIPGLGMGLYIVAEIVKAHGGTIMVDS 906

Query: 797 TPAKGTLIEIIFP 809
              KG+   +  P
Sbjct: 907 AVGKGSTFTVTLP 919



 Score =  141 bits (356), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 55/507 (10%), Positives = 123/507 (24%), Gaps = 42/507 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNT--WYGK 146
           ID    +   +       G     + G  L   S   H+        +L+ + T  W   
Sbjct: 103 IDDAATIVYANVSAQTLTGATREDVCGKPLW--SGAPHLVSTALYQAVLRARQTRKWTEV 160

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
               P+             LP        +G     +   N      +   ++ ++K+ +
Sbjct: 161 EYRSPVT----QTWFHAQLLP--------TGVGLAVLFQENTEPKRFQDALRQSEQKYLN 208

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH-------KDDVLKTEKY 259
           L E      +V   +  +      P    +  +   + + +              +    
Sbjct: 209 LLESVSDRMAVLTPEGLVLEINQRPLADSLCQREEVVGKPFIETPWWSYDPAVQQQLHTA 268

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
               S   S+  +   H                 +        +      +     +   
Sbjct: 269 IEQASRGKSVHFEARIHPQEGWYLDLTVTMTPHLDADGHVEYLIYAGRDITARKRAEAE- 327

Query: 320 NLTPETVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
                 VD  P   +         Y N  +L  T   S++  +  G +  L         
Sbjct: 328 --LHALVDAIPQQVWTIRPDGYLDYCNQRWLDYTSL-SIEQAQGDGWIQCLHPDD---RQ 381

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
                  + R          RL                     ++  + +   G   +  
Sbjct: 382 RIQDAWQMSRKTGMPFETEQRLR--HGMTGTYRWFLVRALPVRDETGQIIKWFGTSTDIE 439

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
           + +  ++K++    +   + E     + +   +G    TN+      G  +E I    + 
Sbjct: 440 EQKRAEQKLKESEERFRLLAETVPQVVWVARPDGQHEYTNQHWCDYTGLTLEQIQSDRWA 499

Query: 499 VF--LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE-EKLLSLRIIIKKLPFSSC-- 553
                  +            L        E        +  +          +   +   
Sbjct: 500 QLPFFHPDDREDRQARWQHALDTGA--MYEHEGRLRNGQTGEYRWFLTRGVPMRDEAGQI 557

Query: 554 --YSLTMHDISEWKQEKNKLSHAKKIA 578
             +  T  DI E K+ +  L  ++K A
Sbjct: 558 VKWFGTSTDIEEQKRTEEALRQSQKRA 584



 Score =  114 bits (285), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 38/396 (9%), Positives = 93/396 (23%), Gaps = 26/396 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            W I   GYL   ++           +  G                    + ++    + 
Sbjct: 339 VWTIRPDGYLDYCNQRWLDYTSLSIEQAQGDGWIQCLHPDDRQRIQDAWQMSRKTGMPFE 398

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
                    T  Y    + ALP+     +    + FG               K  +++F 
Sbjct: 399 TEQRLRHGMTGTYRWFLVRALPVRDETGQII--KWFGTSTDIEEQKRAEQKLKESEERFR 456

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSP-------PPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
            L E       V +                         ++ + L  ++    +  +   
Sbjct: 457 LLAETVPQVVWVARPDGQHEYTNQHWCDYTGLTLEQIQSDRWAQLPFFHPDDREDRQARW 516

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP----SLSAY 314
              L +      E    +               +++ + +  ++                
Sbjct: 517 QHALDTGAMYEHEGRLRNGQTGEYRWFLTRGVPMRDEAGQIVKWFGTSTDIEEQKRTEEA 576

Query: 315 FDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDD-----------IEIA 363
             + +      ++   I   +     +  AN +FL +T Y   D            +   
Sbjct: 577 LRQSQKRASVLMNSNMIGINIIEGEQIVDANDTFLHMTGYTREDLRAGRLNWMRMTLPEY 636

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
              +        +  +          D + +        +         + FI    A +
Sbjct: 637 LARTRQAHQELAAQQSITYEKEYVCKDGSRLPVLV--CGVVLQHHPFQGIAFILDNSARK 694

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459
             E    + I     + R     ++++   +   LE
Sbjct: 695 ELEQRKDSFISMASHELRNPLASLKMQTQLVRKRLE 730



 Score = 94.3 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 43/299 (14%), Positives = 90/299 (30%), Gaps = 22/299 (7%)

Query: 280 LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSH 338
           L              ++ E   Y +  +   +              ++  P   F+    
Sbjct: 47  LEVRAGTHLRSQGWGHTCERDIYRTMSDTKQIRRLTPSSSETLITLLETLPGALFIIDDA 106

Query: 339 GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398
             + YAN S   LT     D              P L      + V+  R  R       
Sbjct: 107 ATIVYANVSAQTLTGATREDVCGKPLWSGA----PHLVSTALYQAVLRARQTRKWTEVEY 162

Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458
           R               F         P  +    +  E+ + +  +  +     +  ++L
Sbjct: 163 R--------SPVTQTWFHAQL----LPTGVGLAVLFQENTEPKRFQDALRQSEQKYLNLL 210

Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
           E+ SD +A++  EG++L  N+          E+++ KPF      +    +   L   + 
Sbjct: 211 ESVSDRMAVLTPEGLVLEINQRPLADSLCQREEVVGKPFIETPWWSYDPAVQQQLHTAIE 270

Query: 519 LDLR-QTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM----HDISEWKQEKNKLS 572
              R +++        +E   L L + +     +  +   +     DI+  K+ + +L 
Sbjct: 271 QASRGKSVHFEARIHPQEGWYLDLTVTMTPHLDADGHVEYLIYAGRDITARKRAEAELH 329



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 52/161 (32%), Gaps = 7/161 (4%)

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
            I     DT+  +R        L ++LE     + II+    I+  N +   L G   ED
Sbjct: 67  DIYRTMSDTKQIRRLTPSSSETLITLLETLPGALFIIDDAATIVYANVSAQTLTGATRED 126

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
           +  KP          + +   +                   +    +       + LP  
Sbjct: 127 VCGKPLWSGAPHLVSTALYQAVLRARQTRKWT----EVEYRSP---VTQTWFHAQLLPTG 179

Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
              ++   + +E K+ ++ L  +++         SD +A +
Sbjct: 180 VGLAVLFQENTEPKRFQDALRQSEQKYLNLLESVSDRMAVL 220


>gi|298290750|ref|YP_003692689.1| multi-sensor signal transduction histidine kinase [Starkeya novella
           DSM 506]
 gi|296927261|gb|ADH88070.1| multi-sensor signal transduction histidine kinase [Starkeya novella
           DSM 506]
          Length = 770

 Score =  355 bits (911), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 140/695 (20%), Positives = 267/695 (38%), Gaps = 70/695 (10%)

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN-RVDNDPRALGKRLDKKFSHLHEIKK 212
           GT     + L++       R     R +G+V    +V      +    ++    L   + 
Sbjct: 91  GTGTTPDVLLSSSL---PPRATEDARRYGLVDSAGKVVAAHDEVAAAREQIGQLLANTQA 147

Query: 213 GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ 272
                E       S     P L     +  +         +          +  +     
Sbjct: 148 LTIFAENAGVLDVSMPDGSPALATVRNLPGVPYQLVVVQPLAGALATWQSDTILTVTLLS 207

Query: 273 EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP 332
                + +  +         +                      D         + +    
Sbjct: 208 TTGAVLLILGFAFHWQASRAREADGIY----------------DTVRARIDTALSRGRCG 251

Query: 333 FFVYSHGNLF-YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR 391
            + +  G    + + S   +  ++  D++   G +++L+     +  +  K +       
Sbjct: 252 LWDWDMGRGRMFWSESMFEMLGFEPRDELISFGEVASLVHTDDTNLYDIAKEI--ADKPG 309

Query: 392 TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV 451
             I    R+  ++    + + +            E     GI  +  + R    +     
Sbjct: 310 RTID---RVFRMKHADGHWVWLRARAEVVPQDNGEPPHLVGIAVDVTEERRLAERTATAD 366

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRKPFTVFLEQNTPSVMN 510
           M+L   +E+ S+   + +    ++  N     L G+          F          V+ 
Sbjct: 367 MRLRDAIESISESFVLWDASNRLVMCNSKFQSLHGFGDANVAPGTEFETVAALARQPVVR 426

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570
             L      D  +   +      +  + L +    ++      Y     DI+  K+ + +
Sbjct: 427 IPLR---PEDRPEEGARAFEAQLEGGRWLKVT---ERRTKDGGYVSVGTDITALKRHEER 480

Query: 571 LSHAKKIAEK-----------------------------------ESSHKSDFLARVSHE 595
           L  ++K                                        +  KS+FLA +SHE
Sbjct: 481 LMESEKRLMALVADLRKSQQTLEMQALQLAELAQNYADEKTKAEDANRAKSEFLANMSHE 540

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           +RTPL AIIGFSE++++  FGPLG+ +Y EY   I  SG  +LD++ND+LD+S+IE+G+M
Sbjct: 541 LRTPLNAIIGFSELMESGLFGPLGSDKYNEYCRDIRDSGRYLLDVINDILDMSRIEAGRM 600

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715
           +L+ +PV LDE V+++I ++ + A+EK+I +       +  + AD R++KQI LN+LSNA
Sbjct: 601 HLNLQPVELDEVVTDSIRVMSVRADEKQITVAADTDGAV-SLEADKRALKQITLNLLSNA 659

Query: 716 IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           I FTP  G++ + T  ++   +++ + D+G+G+    L K  KPF Q+ +      +G+G
Sbjct: 660 IKFTPENGRVSVRTRRSARAALLV-IEDSGIGIPKAALAKIGKPFEQVESQFTKTHKGSG 718

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           LGL +AK++V+ + G   I S+   GT + I  PL
Sbjct: 719 LGLAIAKSLVELHGGTMRIRSSEGVGTTVIIRLPL 753


>gi|294054688|ref|YP_003548346.1| multi-sensor hybrid histidine kinase [Coraliomargarita akajimensis
           DSM 45221]
 gi|293614021|gb|ADE54176.1| multi-sensor hybrid histidine kinase [Coraliomargarita akajimensis
           DSM 45221]
          Length = 1071

 Score =  355 bits (911), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 138/765 (18%), Positives = 250/765 (32%), Gaps = 43/765 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID----PNNHIGDLLKRQNTWY 144
            DA G +  ++    +  G  A   +      V   L  +      N I  +LK  N   
Sbjct: 176 TDAEGVVIRMNPVAVELTGWPASNAVYRPAAAVFKTLQTENRQLAENPIDQVLKTGNAIE 235

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN-RVDNDPRALGKRLDKK 203
            KT    I        I  +A  +     +  G     +     R      AL     + 
Sbjct: 236 AKTPSILIARNGTERQITTSAFALRDNYGQLQGA--VLVFRDLQREFAMRDALVVERTRL 293

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY-----AHKDDVLKTEK 258
            + L     G    + +  ++   +          K              H DD+ + + 
Sbjct: 294 QNVLEGTDAGTWDWKVQTGELNVNERWASMFGYTAKELQPLSVETWIKHLHPDDLKQAQL 353

Query: 259 YPLLTSEESSLPEQEDFHTI--NLNQYTKKQYFGTLQNNSKE-----SFEYLSHRNHPSL 311
                 E   L    +F  +    +          L+ +        S  ++      S 
Sbjct: 354 ALDAHFERKLLDYNVEFRMLHKQGHWVWVNSRGKVLEWSDDGKPLHMSGTHIDVTQRKST 413

Query: 312 SAYFDEGENLTPETVDKCPIPFFV--YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
                E  +L     D   +   +     G +   N     +  Y+S + I +   L   
Sbjct: 414 ETALIEANSLLQGIYDAANLVSIISTDCDGIITGFNAGAERMLGYRSSEMIGVHSPLKIH 473

Query: 370 LDAPKLSDNNAIK-----PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
           L+    S  + ++     P+         +  + R  T      +   +T       N  
Sbjct: 474 LEEEIRSVADELQLADNIPLFNVFKASVDMEKNERNWTYVCKDGSHRQVTLAVTMIRNDA 533

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
            E     G+  +        RK+      L  +L +    +   +   +   +NR  +  
Sbjct: 534 GEITGYLGVAMDITAHLEATRKLSESQYILSKVLNSIPVRVFWKDTNSVYQGSNRLFAND 593

Query: 485 FGYP-VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
                 E ++      F       +      +++     + L         + +L  L+ 
Sbjct: 594 ANLSSPERLIGLTDYDFGWDEQAELYREDDQKVMKSGRAK-LNYEEPQRRSDGELTWLKT 652

Query: 544 IIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
               L               DI+  KQ +  L  AK  AE  S  K +FLA +SHE+RTP
Sbjct: 653 SKVPLKDKHGKVIGVLGCYEDITLRKQAEADLIQAKDEAEAASRAKDEFLAVMSHEMRTP 712

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  I+GFS +++      L N     Y + I  + N  L +++D+LD  +I +  +    
Sbjct: 713 LNPILGFSAMLRE----SLPNEPEAGYLDTIVSAANRQLRLIDDILDYMRINNSSITASP 768

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHF 718
           EP  L +    A+       +   +       ++    ++ DL  +++I  N+L NA  +
Sbjct: 769 EPFRLADLCETAVHDASSLTDNLALDFHNELPDSQDFTVVTDLIMLRRILDNLLGNACKY 828

Query: 719 TPSGGQ-IIISTTHTSNE--EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T  G   + +      +      + VRDTG+G+T        + F Q  +S   + EG G
Sbjct: 829 TNEGSVDLYLRLAEYDSRISTFEIEVRDTGIGITEEMQRNLFEAFSQADSSYSRKHEGLG 888

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY---DTSHPH 817
           LGL + K ++D   G+  + S   KG+   +  PL    DT  P 
Sbjct: 889 LGLAICKRLLDILGGEISVESIRGKGSSFTLSIPLQIKEDTETPE 933



 Score = 75.4 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 35/258 (13%), Positives = 81/258 (31%), Gaps = 13/258 (5%)

Query: 333 FFVYSHGNLFYANP-SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN-AIKPVMLYRSD 390
              Y    L YA       LT  ++   +E++     LL A         ++P+     +
Sbjct: 39  IADYPTDQLQYARQLGTEQLTAARNRQALELSLLAVVLLSATIYISYRSILRPLKSLERE 98

Query: 391 RTCIA--ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
              +A  AS  L    W+   +   +        +              +  R  + +++
Sbjct: 99  MREVADYASKELSPDDWDELQAAPGSIRATRTFPELNTISESYQSMLRALIERQTENRLQ 158

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL---EQNT 505
            E   L    +A  D I I + EG+++  N    +L G+P  + + +P        +   
Sbjct: 159 DE--HLRVTFDAIGDAILITDAEGVVIRMNPVAVELTGWPASNAVYRPAAAVFKTLQTEN 216

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDI 561
             +  + + ++L        +  ++   +      +      L  +        L   D+
Sbjct: 217 RQLAENPIDQVLKTGNAIEAKTPSILIARNGTERQITTSAFALRDNYGQLQGAVLVFRDL 276

Query: 562 SEWKQEKNKLSHAKKIAE 579
                 ++ L   +   +
Sbjct: 277 QREFAMRDALVVERTRLQ 294


>gi|240141036|ref|YP_002965516.1| putative hybrid histidine kinase; Domains: two PAS, two PAC, His
           KinaseA, ATPase and two REC (CheY-like)
           [Methylobacterium extorquens AM1]
 gi|240011013|gb|ACS42239.1| putative hybrid histidine kinase; Domains: two PAS, two PAC, His
           KinaseA, ATPase and two REC (CheY-like)
           [Methylobacterium extorquens AM1]
          Length = 803

 Score =  355 bits (911), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 100/501 (19%), Positives = 191/501 (38%), Gaps = 19/501 (3%)

Query: 317 EGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
                     D  P   ++    G L + N  +   T     +    A      L  P  
Sbjct: 24  PTMADFRNLADALPQLAWIAEADGTLVWYNRRWYDYTGTTPAEM---ADHGWRKLHHPDH 80

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
            +  A +      +  +          ++           +     N     +   G   
Sbjct: 81  LERAAERFASCIAAGESWQD----TFPLRGKDGRYRWFLSMAEPVRNAEGTVLRWYGTNT 136

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
           +  +TR+ +  +     +  ++++A++  I     +G ++    + +   G   E     
Sbjct: 137 DVTETRLAQDALGHSEQRFRALVDASAAVIWSTTAQGELMPPQPSWAAYTGQSDEAYQGW 196

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-- 553
            +   +  +  + +     E +        E        +E    + +    +       
Sbjct: 197 GWIDAIHPDDRARVAEVWAECVE--RVTVFEVEYRLRRHDEVWRDMEVRGVPVLAEDGSI 254

Query: 554 --YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
             +     DI+  K+ +  + HA+  AE  +  KS FLA +SHE+RTPL+A+IG+SE + 
Sbjct: 255 REWVGLNIDITARKEAEAAIEHARAAAEAANLAKSQFLANMSHELRTPLSAVIGYSE-ML 313

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
            +    LG    +     I+ S   +L ++ND+LDISKIE+G++ L  E   +   + + 
Sbjct: 314 GEELEDLGQAELLPDLRKIESSARHLLGLINDVLDISKIEAGRLTLAAETFDVVSLIEDV 373

Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
            +  Q    +KR   R  F  ++  +  D   ++Q  +N++ NA  F+  G +II+    
Sbjct: 374 TAATQSLITKKRNRFRLDFEGDLGAMHQDQSKLRQSLINLIGNAAKFSEDG-EIILGVRR 432

Query: 732 TSNE---EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                   +   V DTG+G+T  ++ +  + F Q   S   +  GTGLGL + +A V+  
Sbjct: 433 LREGGADWLSFSVSDTGIGLTQEQIGRLFERFSQADESTTRQFGGTGLGLAITRAFVERM 492

Query: 789 MGKFYIFSTPAKGTLIEIIFP 809
            G   + ST   G    I  P
Sbjct: 493 GGTIGVESTFGAGATFTIRLP 513



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/264 (9%), Positives = 59/264 (22%), Gaps = 13/264 (4%)

Query: 55  TDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI 114
           T Q+ +       +     F         +  W  +A G L   +       G    +M 
Sbjct: 13  TVQDGKVPETGPTMAD---FRNLADALP-QLAWIAEADGTLVWYNRRWYDYTGTTPAEMA 68

Query: 115 GMRLCDVSDILHID-PNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNR 173
                 +    H++         +    +W     L   +G   Y      A P+ +   
Sbjct: 69  DHGWRKLHHPDHLERAAERFASCIAAGESWQDTFPLRGKDGR--YRWFLSMAEPVRNAEG 126

Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP--- 230
                R +G           +      +++F  L +           + ++   Q     
Sbjct: 127 TV--LRWYGTNTDVTETRLAQDALGHSEQRFRALVDASAAVIWSTTAQGELMPPQPSWAA 184

Query: 231 -PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYF 289
                    +     +     D     E +       +    +      +      +   
Sbjct: 185 YTGQSDEAYQGWGWIDAIHPDDRARVAEVWAECVERVTVFEVEYRLRRHDEVWRDMEVRG 244

Query: 290 GTLQNNSKESFEYLSHRNHPSLSA 313
             +        E++      +   
Sbjct: 245 VPVLAEDGSIREWVGLNIDITARK 268


>gi|254425959|ref|ZP_05039676.1| PAS fold family [Synechococcus sp. PCC 7335]
 gi|196188382|gb|EDX83347.1| PAS fold family [Synechococcus sp. PCC 7335]
          Length = 1186

 Score =  355 bits (911), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 116/814 (14%), Positives = 249/814 (30%), Gaps = 116/814 (14%)

Query: 90   DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGKTT 148
               GY K I+    + +G    +++     +      +      I  L + + T   +  
Sbjct: 402  GLDGYFKRINPAFSQVLGYSDDELMAKPFVEFIHPDDLTATLREIQQLSEGKPTISFENR 461

Query: 149  LW----------------PIEGTNLYVPIDLA-------ALPIYSRNREFSGFRGFGIVH 185
                              P EGT      D+        AL    +  +  G     +  
Sbjct: 462  YRCKDGRYRWLNWNAIASPAEGTIYAAARDITQQRQTELALKRQYQQGQLIG----NVTR 517

Query: 186  VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS-------PPPHLRMKN 238
              R   +   + K    +   +    +      +        +        P    +  +
Sbjct: 518  RIRESLEIEEILKTAVTEVQSILNCDRVLVIEREGDASGQVIEESTLPGIKPALLGQPVS 577

Query: 239  KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTI-------------------- 278
             ++           +  +           S      F                       
Sbjct: 578  GLALAIIPDPSVPQICASGDLSQHPCTLCSHQFLNQFQIRASLEVAIYVQNQPWGLLVAS 637

Query: 279  --NLNQYTKKQYFGTLQNNSKESFEYLSHRN----------------------------- 307
               + +  +      ++  + +    ++                                
Sbjct: 638  QNEVARQWQPFEIELMEQLADQMGVAIAQAQLLDNLEAIVKQRTAQLTQTNERLQLEIQE 697

Query: 308  HPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
              S      E +      +         +     +   N     +  Y + + I     L
Sbjct: 698  RISTENALKESQQQLGNILKTAGDAIISIDEAQQIVMFNQGAEKIFGYAAKEIIGEP--L 755

Query: 367  STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
              LL        +         +       + R   +   R+N            +Q   
Sbjct: 756  EKLLPDAF-RRVHKQHIRSFGLASDASRQMAERSRDVFGQRQNGEEFPAEATISRSQTKT 814

Query: 427  NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
             +    +  +  + R ++  +     QL    +A    I  ++ +      N+  +  FG
Sbjct: 815  GLLFTVMLKDITERRQSEAALRRSEEQLRLTTDALPVLICYVDADQRYRFINKTYADWFG 874

Query: 487  YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
              VE ++ +     +  +       Y+ + L+    Q ++     +    +++ L     
Sbjct: 875  QSVEAMMGRLVREIIGDSYYQQTQPYIEKALAG---QAVQYELAIAGAAGEVIDLSATYI 931

Query: 547  KLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
                +      +   + DIS+ K  +                +++F++ VSHE+RTPLT+
Sbjct: 932  PDQGADGKVKGFFGLISDISDRKANE--------------RLQNEFISMVSHELRTPLTS 977

Query: 603  IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
            I G  +++         N +  E      ++ + +  ++ND+LD+ +IESG++++  +  
Sbjct: 978  IHGSLKLMSMMIGD--SNSKEKELVAIALKNTDRLGRLINDVLDLERIESGRVSMTRQDC 1035

Query: 663  SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
            +L E +      +   A E  + +          I  D   + Q   N+LSNAI F+PS 
Sbjct: 1036 NLAELMQHTAQAMAPMALELNVKLVVE--PIDITISLDPDRIIQTLTNLLSNAIKFSPSR 1093

Query: 723  GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
              +I+S T    + V+L  +D+G G+   + E   + F Q+ + +  R  GTGLGL + K
Sbjct: 1094 ANVILSATEREQD-VLLCTKDSGPGIPADKTELIFERFQQVDSRESRRLGGTGLGLAICK 1152

Query: 783  AMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
             +V  + GK ++ S   KG+      P      P
Sbjct: 1153 QIVLQHGGKIWVESELEKGSAFYFTLPKLRNQLP 1186



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/312 (11%), Positives = 88/312 (28%), Gaps = 16/312 (5%)

Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
                H            L    +   +        +L+  +     +            
Sbjct: 265 MMEARHTRRLVVGDHAGRLAGIITQTSLLEPLDPLQMLEELEQLQTLSETQTERLSQANL 324

Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
            +  + ++   + +    L        +  +         +   +   R+  +  +    
Sbjct: 325 QLQQTNQVLQKEVDERRRLESALQRANQLLEAQVGDQAAELVKANESLRLEVQDRQQAQH 384

Query: 453 QLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
           +L      T + +  I   +G     N A S++ GY  ++++ KPF  F+  +  +    
Sbjct: 385 ELEQFFVVTPNSMLCIAGLDGYFKRINPAFSQVLGYSDDELMAKPFVEFIHPDDLTATLR 444

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571
            + ++       T+        K+ +   L       P          DI++ +Q +  L
Sbjct: 445 EIQQLSEGKP--TISFENRYRCKDGRYRWLNWNAIASPAEGTIYAAARDITQQRQTELAL 502

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
               +            +  V+  IR  L       E I       + +    +    I+
Sbjct: 503 KRQYQQ--------GQLIGNVTRRIRESL-----EIEEILKTAVTEVQSILNCDRVLVIE 549

Query: 632 RSGNLVLDIVND 643
           R G+    ++ +
Sbjct: 550 REGDASGQVIEE 561



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 42/144 (29%), Gaps = 9/144 (6%)

Query: 56  DQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIG 115
           D  +   S      SE           V   + +DA    + I++      G     M+G
Sbjct: 824 DITERRQSEAALRRSEEQLRLTTDALPVLICY-VDADQRYRFINKTYADWFGQSVEAMMG 882

Query: 116 MRLCDVS-DILHIDPNNHIGDLLKRQNTWYGKTTLWPIEG-TNLYVPIDLAALPIYSRNR 173
             + ++  D  +     +I   L  Q           I G     + +    +P    + 
Sbjct: 883 RLVREIIGDSYYQQTQPYIEKALAGQA----VQYELAIAGAAGEVIDLSATYIPDQGADG 938

Query: 174 EFSGFRGFGIVHVNRVDNDPRALG 197
           +  GF  FG++           L 
Sbjct: 939 KVKGF--FGLISDISDRKANERLQ 960



 Score = 42.7 bits (99), Expect = 0.25,   Method: Composition-based stats.
 Identities = 24/249 (9%), Positives = 58/249 (23%), Gaps = 14/249 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL------LKRQNT 142
           ID    +   ++   K  G  A ++IG  L  +      D    +         L    +
Sbjct: 726 IDEAQQIVMFNQGAEKIFGYAAKEIIGEPLEKLLP----DAFRRVHKQHIRSFGLASDAS 781

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
                    + G       +  A    SR++  +G     ++          A  +R ++
Sbjct: 782 RQMAERSRDVFGQRQNGE-EFPAEATISRSQTKTGLLFTVMLKDITERRQSEAALRRSEE 840

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSP---PPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
           +     +                             ++  +  L           +T+ Y
Sbjct: 841 QLRLTTDALPVLICYVDADQRYRFINKTYADWFGQSVEAMMGRLVREIIGDSYYQQTQPY 900

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
                   ++  +                +   Q    +   +    +  S     +  +
Sbjct: 901 IEKALAGQAVQYELAIAGAAGEVIDLSATYIPDQGADGKVKGFFGLISDISDRKANERLQ 960

Query: 320 NLTPETVDK 328
           N     V  
Sbjct: 961 NEFISMVSH 969


>gi|91203278|emb|CAJ72917.1| conserved hypothetical protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 494

 Score =  355 bits (911), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 89/512 (17%), Positives = 199/512 (38%), Gaps = 30/512 (5%)

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
              L     +  ++   +++       V    G + Y NP+F+ +T Y   + I    G 
Sbjct: 6   EDGLHGLNKQHLSMLIHSIEHGSRSVIVTDVKGCIQYVNPAFVKITGYAKEEAI----GK 61

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
           +  +     +     K +                   +        +        N+   
Sbjct: 62  NPRILKSGETPQGQYKQLWETIVSGNEWEGEFHN---RKKTGEYYWVFATISPMKNEEGA 118

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
                 I+ E  + +  +        +  + ++ T+D +  I+ +G++   N A  K+FG
Sbjct: 119 ITHFVAIQREITERKRKEV-------RFNAFVKNTADALIAIDEQGVVELFNPAAEKMFG 171

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE---KITLGSTKEEKLLSLRI 543
           Y  E+++ +   + + ++        L   L+    + L           K+     + +
Sbjct: 172 YKKEEVVGENVIMLMPESYRKKHEDGLKRYLNTGKARILGTGPIELEALRKDGTAFPIEL 231

Query: 544 IIK--KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
            I   +L     +   + DI+E K  + KL H+ +   + ++    F    SH+++ PL 
Sbjct: 232 TIGDARLDEYFTFIGIIRDITERKWAEQKLIHSMEELSRSNAELQQFAYVASHDLQEPLR 291

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
            I  ++  +  +R+    +    EY  +       +  ++NDLL  S++ S     +FEP
Sbjct: 292 MITSYT-KLLERRYKDKLDSNANEYIAFAVDGAMRMQQLINDLLAYSRVTSRCR--NFEP 348

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF-TP 720
           V+  E  +     +++   E    I     +++P ++AD   + Q+  N++ NA+ F   
Sbjct: 349 VNCTEVFNRVAKNLKIAIEESGAAIT---QDHLPVVMADPSQLTQLFQNLIGNALKFRGE 405

Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
           +  ++ IS     +E +   V D G+G+     ++    F ++    +    G+G+GL +
Sbjct: 406 APPRVHISAEKKESEWI-FSVSDNGIGIDPQYYDRIFIVFQRLHG--KEDYPGSGIGLSI 462

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
            K +V+ + G+ ++ S P KG       P+ +
Sbjct: 463 CKKIVERHSGRIWLKSEPGKGATFYFSLPVRN 494



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/241 (10%), Positives = 63/241 (26%), Gaps = 9/241 (3%)

Query: 80  PRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID-PNNHIGDLLK 138
               R     D  G ++ ++    K  G    + IG     +            + + + 
Sbjct: 25  EHGSRSVIVTDVKGCIQYVNPAFVKITGYAKEEAIGKNPRILKSGETPQGQYKQLWETIV 84

Query: 139 RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
             N W G+       G   +V   ++  P+ +     + F    I               
Sbjct: 85  SGNEWEGEFHNRKKTGEYYWVFATIS--PMKNEEGAITHF--VAIQREITERKRKEVRFN 140

Query: 199 RLDK--KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256
              K    + +   ++G   +     +          +     +     Y    +D LK 
Sbjct: 141 AFVKNTADALIAIDEQGVVELFNPAAEKMFGYKKEEVVGENVIMLMPESYRKKHEDGLKR 200

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
                      + P + +    +   +  +   G  +    E F ++      +   + +
Sbjct: 201 YLNTGKARILGTGPIELEALRKDGTAFPIELTIGDAR--LDEYFTFIGIIRDITERKWAE 258

Query: 317 E 317
           +
Sbjct: 259 Q 259



 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/263 (10%), Positives = 62/263 (23%), Gaps = 27/263 (10%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147
           ID  G ++  +    K  G    +++G  +  +    +     + +   L         T
Sbjct: 153 IDEQGVVELFNPAAEKMFGYKKEEVVGENVIMLMPESYRKKHEDGLKRYLNTGKARILGT 212

Query: 148 TL-----WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
                     +GT   + + +           F G     I+                 +
Sbjct: 213 GPIELEALRKDGTAFPIELTI-GDARLDEYFTFIG-----IIRDITERKWAEQKLIHSME 266

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
           + S  +   +  + V                     +   +   Y    +    +K    
Sbjct: 267 ELSRSNAELQQFAYVASHDL---------------QEPLRMITSYTKLLERRYKDKLDSN 311

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
            +E  +           L          T +  + E        N  + +      E+  
Sbjct: 312 ANEYIAFAVDGAMRMQQLINDLLAYSRVTSRCRNFEPVNCTEVFNRVAKNLKIAIEESGA 371

Query: 323 PETVDKCPIPFFVYSHGNLFYAN 345
             T D  P+     S     + N
Sbjct: 372 AITQDHLPVVMADPSQLTQLFQN 394


>gi|332535394|ref|ZP_08411185.1| periplasmic sensor hybrid histidine kinase [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332035187|gb|EGI71697.1| periplasmic sensor hybrid histidine kinase [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 892

 Score =  355 bits (911), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 100/395 (25%), Positives = 180/395 (45%), Gaps = 23/395 (5%)

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR-K 495
           + + +   +++    M   SIL + S  I   +  G+I   N A  KL GY  +D++  K
Sbjct: 365 ESEVKQRTQEIADMNMLQQSILNSASYSIIATDTNGLITLFNPASEKLLGYKAQDVIGIK 424

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK-------------ITLGSTKEEKLLSLR 542
              +F  +         L+  L+  +    E                   +   + + + 
Sbjct: 425 NPGIFHLKEEIIKKAKLLSAELNKPVTPGFEVFILKATATEPDINQWTYISSTGEQIQVN 484

Query: 543 IIIKKL----PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
           + +  L      +  Y    +D++E    +  L H+K++AE+ S  KS+FLA +SHEIRT
Sbjct: 485 LSVTSLLNNEGDTVGYLGIAYDLTEQIDHEQALGHSKELAEQASQAKSEFLANMSHEIRT 544

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
           P+  I+G  ++++ Q      N +  EY      S   +  I+ND+LD SKIE+GK++L 
Sbjct: 545 PMNGILGTLQLLQEQPL----NEKSKEYLKKSLYSTRALTTIINDILDFSKIEAGKLSLE 600

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718
            +P    E +    S + + A +K I ++          + D   ++Q+ LN++SNAI F
Sbjct: 601 HKPFDFFELIHHLESDLGVQATDKNIYLKFVIDIEHKHWVGDPVRLRQVFLNLISNAIKF 660

Query: 719 TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
           T  GG + ++   T    +   + DTG+G++   +++  + F Q   S      GTGLGL
Sbjct: 661 TSQGG-VTVTFRLTDESRICCCISDTGIGISEQAIDRLFERFEQAEQSTTREYGGTGLGL 719

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
           P+ K+++    G+  + S    G+   +  PL   
Sbjct: 720 PITKSLIGLMNGEIKVTSQLGSGSQFYVYLPLKQA 754



 Score = 41.6 bits (96), Expect = 0.58,   Method: Composition-based stats.
 Identities = 19/152 (12%), Positives = 42/152 (27%), Gaps = 17/152 (11%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI-LHIDPNNHIGDL----------- 136
            D +G +   +    K +G  A  +IG++   +  +   I     +              
Sbjct: 396 TDTNGLITLFNPASEKLLGYKAQDVIGIKNPGIFHLKEEIIKKAKLLSAELNKPVTPGFE 455

Query: 137 ---LKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193
              LK   T         I  T   + ++L+   + +   +  G+ G  I +      D 
Sbjct: 456 VFILKATATEPDINQWTYISSTGEQIQVNLSVTSLLNNEGDTVGYLG--IAYDLTEQIDH 513

Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF 225
                   +      + K    +    +    
Sbjct: 514 EQALGHSKELAEQASQAKSEFLANMSHEIRTP 545


>gi|163853614|ref|YP_001641657.1| PAS sensor protein [Methylobacterium extorquens PA1]
 gi|163665219|gb|ABY32586.1| PAS sensor protein [Methylobacterium extorquens PA1]
          Length = 792

 Score =  355 bits (911), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 100/501 (19%), Positives = 192/501 (38%), Gaps = 19/501 (3%)

Query: 317 EGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
                     D  P   ++    G L + N  +   T     +    A      L  P  
Sbjct: 13  PTMADFRNLADALPQLAWIAEADGTLVWYNRRWYDYTGTTPAEM---ADHGWRKLHHPDH 69

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
            +  A +      +  +          ++           +     N     +   G   
Sbjct: 70  LERAAERFASCIAAGESWQD----TFPLRGKDGRYRWFLSMAEPVRNAEGTVLRWYGTNT 125

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
           +  +TR+ +  +     +  ++++A++  I     +G ++    + +   G   E     
Sbjct: 126 DVTETRLAQDALGHSEQRFRALVDASAAVIWSTTAQGELMPPQPSWAAYTGQSDEAYQGW 185

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-- 553
            +   +  +  + +     E +        E        +E    + +    +       
Sbjct: 186 GWIDAIHPDDRARVAEVWAECVE--RVTVFEVEYRLRRHDEVWRDMEVRGVPVLAEDGSI 243

Query: 554 --YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
             +     DI+  K+ +  + HA+  AE  +  KS FLA +SHE+RTPL+A+IG+SE + 
Sbjct: 244 REWVGLNIDITARKEAEAAIEHARAAAEAANLAKSQFLANMSHELRTPLSAVIGYSE-ML 302

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
            +    LG    +     I+ S   +L ++ND+LDISKIE+G++ L  E   +   + + 
Sbjct: 303 GEELEDLGQAELLPDLRKIESSARHLLGLINDVLDISKIEAGRLTLAAETFDVVSLIEDV 362

Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
            +  Q    +KR   R  F  ++  +  D   ++Q  +N++ NA  F+  G +II+    
Sbjct: 363 TAATQSLITKKRNRFRLDFEGDLGAMHQDQLKLRQSLINLIGNAAKFSEDG-EIILGVRR 421

Query: 732 TSNE---EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                   +   V DTG+G+T  ++ +  + F Q   S   +  GTGLGL + +A V+  
Sbjct: 422 LREGGADWLSFSVSDTGIGLTQEQIGRLFERFSQADESTTRQFGGTGLGLAITRAFVERM 481

Query: 789 MGKFYIFSTPAKGTLIEIIFP 809
            G   + ST  +G    I  P
Sbjct: 482 GGTIGVESTFGEGATFTIRLP 502



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/264 (9%), Positives = 59/264 (22%), Gaps = 13/264 (4%)

Query: 55  TDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI 114
           T Q+ +       +     F         +  W  +A G L   +       G    +M 
Sbjct: 2   TVQDGKVPETGPTMAD---FRNLADALP-QLAWIAEADGTLVWYNRRWYDYTGTTPAEMA 57

Query: 115 GMRLCDVSDILHID-PNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNR 173
                 +    H++         +    +W     L   +G   Y      A P+ +   
Sbjct: 58  DHGWRKLHHPDHLERAAERFASCIAAGESWQDTFPLRGKDGR--YRWFLSMAEPVRNAEG 115

Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP--- 230
                R +G           +      +++F  L +           + ++   Q     
Sbjct: 116 TV--LRWYGTNTDVTETRLAQDALGHSEQRFRALVDASAAVIWSTTAQGELMPPQPSWAA 173

Query: 231 -PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYF 289
                    +     +     D     E +       +    +      +      +   
Sbjct: 174 YTGQSDEAYQGWGWIDAIHPDDRARVAEVWAECVERVTVFEVEYRLRRHDEVWRDMEVRG 233

Query: 290 GTLQNNSKESFEYLSHRNHPSLSA 313
             +        E++      +   
Sbjct: 234 VPVLAEDGSIREWVGLNIDITARK 257


>gi|110633259|ref|YP_673467.1| multi-sensor signal transduction histidine kinase [Mesorhizobium
           sp. BNC1]
 gi|110284243|gb|ABG62302.1| multi-sensor signal transduction histidine kinase [Chelativorans
           sp. BNC1]
          Length = 774

 Score =  355 bits (911), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 126/510 (24%), Positives = 232/510 (45%), Gaps = 38/510 (7%)

Query: 331 IPFFVYSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389
              + +       Y + S   +  Y++ D +   G +++LL             ++    
Sbjct: 265 CGLWDWDMARGKMYWSASMYEMLGYEAADVMLSFGDVASLLHPDDSDLFAVANRIVAREV 324

Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449
           ++       ++  ++      + +           PE +   GI  +  + R   ++ E 
Sbjct: 325 EQVD-----QVFRMRHANGQWIWIRARAQVVDPDAPE-IHLIGIAVDVTEQRTLVQQSEA 378

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSV 508
              +L + +E  ++   + +    ++  N    +  G    +I+   P      +   + 
Sbjct: 379 ADQRLRTAIENITESFVLWDASERLVMCNSRYLQDTGLDPSEIVPGLPRQEIESRMKATR 438

Query: 509 MNHYLTEILSLDLRQTLEKIT---------LGSTKEEKLLSLRIIIKKL--------PFS 551
               LT   +     T E+              T++   +S+   I +L           
Sbjct: 439 YERRLTGSNNASEGITYERQLADGRWLQVTELKTRDGGTVSVGTDITQLKQHQEKLVESE 498

Query: 552 SCYSLTMHDISEWKQEKNK-----------LSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
                T+HD+S  ++ + +                + AE  +  KS+FLA +SHE+RTPL
Sbjct: 499 RRLMATIHDLSLARRAEQERGQELVELNRKYMRETERAESANRAKSEFLANMSHELRTPL 558

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
            AIIGFSE+++   FGPLG+ RY EY N I  SG  +L ++ND+LD+SKIE+G+ ++H E
Sbjct: 559 NAIIGFSELMQQGLFGPLGSERYQEYVNDIYSSGTYLLGVINDILDMSKIEAGQFSIHRE 618

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720
            + L E + E + +V L A +K I + +    ++  + AD R+VKQI +N+L NA+ FT 
Sbjct: 619 SIDLSEVIRETMRVVTLQAGKKNIELTSDVPASL-SLHADRRAVKQILINLLFNAVKFTG 677

Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
            GG++ +     SN  ++L ++DTG G+    L+K  +PF Q+ N       G+GLGL +
Sbjct: 678 QGGRVTLRARVVSN-SLMLTIKDTGCGIPREALKKLGRPFEQVENQYSRSHNGSGLGLAI 736

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           ++++ + + G   I ST   GT++ I  P+
Sbjct: 737 SRSLTELHGGALRIRSTEGVGTIVSIRLPV 766



 Score = 45.8 bits (107), Expect = 0.033,   Method: Composition-based stats.
 Identities = 26/268 (9%), Positives = 60/268 (22%), Gaps = 12/268 (4%)

Query: 97  EISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL--LKRQNTWYGKTTLWPIEG 154
             S  + + +G  A  ++ +   DV+ +LH D ++       +  +              
Sbjct: 278 YWSASMYEMLGYEAADVM-LSFGDVASLLHPDDSDLFAVANRIVAREVEQVDQVFRMRHA 336

Query: 155 TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214
              ++ I   A  +   +       G  +              +  D++     E     
Sbjct: 337 NGQWIWIRARAQ-VVDPDAPEIHLIGIAV--DVTEQRTLVQQSEAADQRLRTAIENITES 393

Query: 215 SSVEKEKYDIFSQQSP---PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271
             +      +    S       L     V  L              +  L  S  +S   
Sbjct: 394 FVLWDASERLVMCNSRYLQDTGLDPSEIVPGLPRQEIESRMKATRYERRLTGSNNASEGI 453

Query: 272 QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD-KCP 330
             +    +      +      ++    S      +         +    L     D    
Sbjct: 454 TYERQLADG--RWLQVTELKTRDGGTVSVGTDITQLKQHQEKLVESERRLMATIHDLSLA 511

Query: 331 IPFFVYSHGNLFYANPSFLLLTKYKSVD 358
                     L   N  ++  T+     
Sbjct: 512 RRAEQERGQELVELNRKYMRETERAESA 539


>gi|254457993|ref|ZP_05071420.1| sensor histidine kinase/response regulator fusion protein
           [Campylobacterales bacterium GD 1]
 gi|207085386|gb|EDZ62671.1| sensor histidine kinase/response regulator fusion protein
           [Campylobacterales bacterium GD 1]
          Length = 798

 Score =  355 bits (911), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 102/362 (28%), Positives = 172/362 (47%), Gaps = 10/362 (2%)

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
           L+     I +++    +   N   +KL GY  ++I+ K +          +  + L   +
Sbjct: 300 LDIAQVLIMVLDNNKNVTMINTEGAKLLGYSKDEIIGKNWIENFLPKNIQLEINELASDI 359

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSH 573
             +  +         TK  +L  +      L            +  DI+E K+   +L+ 
Sbjct: 360 IEEKEKYPNYENYVLTKSGELKLILWKYSTLFDDQGNTIGLLTSGQDITEQKRTYLELNK 419

Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
           AK  AEK +  KS+FLA +SHEIRTPL  I+GF  ++         + +  E    I  S
Sbjct: 420 AKYEAEKANKSKSEFLANMSHEIRTPLNGIMGFVNLLYKDE----KDIKKQEKLKIIKDS 475

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693
              ++DIVND+LD SKIESG +++   P ++ +A+S+ I L +  A EK I I+ S  + 
Sbjct: 476 SYTLIDIVNDILDFSKIESGMLSIEKVPFNILDAISQTILLFRQRAKEKNITIKLSIDDK 535

Query: 694 IPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN-EEVILRVRDTGVGMTNY 751
           IP+ I  D+   KQ+  N+LSNA+ F+     + ++  +  N  E+   V D+GVG++  
Sbjct: 536 IPKFIEGDITRTKQVFSNLLSNALKFSNEDSDVKVNVNYLDNTNEIYCEVLDSGVGISPS 595

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
           + +   + F Q  +S   +  GTGLGL + K +V+   GK  + S    G+      P+ 
Sbjct: 596 KTDTIFEAFEQEDSSTTRKYGGTGLGLSIVKQLVELMGGKIGVNSELGVGSTFYFTLPII 655

Query: 812 DT 813
           + 
Sbjct: 656 EA 657


>gi|192290539|ref|YP_001991144.1| PAS/PAC sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris TIE-1]
 gi|192284288|gb|ACF00669.1| PAS/PAC sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris TIE-1]
          Length = 769

 Score =  355 bits (911), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 138/692 (19%), Positives = 260/692 (37%), Gaps = 71/692 (10%)

Query: 181 FGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV 240
            G+V ++R  +    L   L             H  V      I ++        + N+ 
Sbjct: 90  IGVVRLDRPASI-ERLQNLLPGLIPTWGIAPGRHVIVTSADQRILARVPIGTEPSVDNRF 148

Query: 241 SS-LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
              L      K     +     L    S+L       ++       ++  G+L  +    
Sbjct: 149 LEILGAASLTKSGQQSSISEITLPGGASALATMHVVKSLPGQVVIIQEDTGSLLRSDTAL 208

Query: 300 FEYL-----------------SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH--GN 340
              L                             D   +     +++     + +    G 
Sbjct: 209 QVTLSATTGFVVLILGFAFHWQSTRAREGDLINDAVRSRIDTALNRGRCGLWDWDLSRGR 268

Query: 341 LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400
           + + + S   +   +S +D+   G ++ L+    +        +M               
Sbjct: 269 I-FWSQSMFTILGLESRNDLLTFGEVNALVKGEDIDLFAIADELMA----GRVDHID-HS 322

Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
             ++    + + +                  GI  +  + +    +     ++L   +E 
Sbjct: 323 FQMRHAHGHWIWLRMRCELTQEAGATEKHLIGIAVDITEQKSLAERSVEADLRLRDAIET 382

Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLTEILSL 519
             +   + + E  ++  N    +L   P   +     +   LE      +    T +   
Sbjct: 383 IPEAFVLWDAENRLVLCNSHFQRLHKLPDSAVTPGTSYETILEVGRMPQLR---TRLCDN 439

Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA----- 574
                  +       +   L +    ++      Y     DI+  K  + KL        
Sbjct: 440 GAVMPGARTFEAQLDDGSWLHIS---ERRTKDGGYVAVGTDITRIKAHEQKLVDNDLRLR 496

Query: 575 ------------------------------KKIAEKESSHKSDFLARVSHEIRTPLTAII 604
                                         K+ AE+ +  KS FLA +SHE+RTPL AII
Sbjct: 497 ATVADLKITQSKLEKQALELADLARKYADEKRRAEEANQTKSKFLANMSHELRTPLNAII 556

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           GFSE++ +  FG LG+ +Y EY + I  SG+ +L+++ND+LD+SKIE+G+M L  EP+ L
Sbjct: 557 GFSEIMGSGMFGTLGSEKYQEYCHDIMTSGHYLLEVINDILDMSKIEAGRMRLEMEPLDL 616

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724
            + + E++ +V   A  K + +R+   + IP I+AD R++KQI +N+LSNA+ FTP  G+
Sbjct: 617 AKTIGESVKVVAGRAEHKHLELRSELNDQIP-IVADRRAIKQILINLLSNAVKFTPDAGR 675

Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
           + +   H +   ++L + DTG+G+    L +  +PF Q+ +       G+GLGL +AK++
Sbjct: 676 VTVR-GHVAGGSIVLMIADTGIGIPPQSLRRLGQPFEQVESQLTKSYHGSGLGLAIAKSL 734

Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           V+ + G   + ST   GT++ +  P      P
Sbjct: 735 VNLHGGSMRLRSTLGAGTVVMVSLPRTCQQRP 766


>gi|209522699|ref|ZP_03271257.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
 gi|209496748|gb|EDZ97045.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
          Length = 959

 Score =  355 bits (911), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 139/790 (17%), Positives = 256/790 (32%), Gaps = 102/790 (12%)

Query: 70  SENTFVFDPIPRTVRFTWNI-------------DAHGYLKEISEELPKTIGNYAFKMIGM 116
            +    FD I R+ +F W I             +  G    +S    ++ G++  K +  
Sbjct: 88  IQGDISFDDIERSEKFLWRIIQLFENVYAVYIGNEQGQFIYVSR---ESDGSFRAKSVEE 144

Query: 117 RLCDVSDILHIDPNNHIGDLLK------RQNTWYGKTTLWPIEG-------TNLYVPIDL 163
               +     I P    GD         R   WY KT               N  + I  
Sbjct: 145 SPNRL--YYMITPEGARGDFYNQTIYDPRIRPWYTKTLALNAPNWSPIYAFPNGKLGITA 202

Query: 164 AALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYD 223
           +  P+     +  G  G   V           L    D               VE     
Sbjct: 203 S-HPLSDSQGQLIGVIGVDFV-----------LTLINDFLGGLEVSPNGEVFIVESSGLL 250

Query: 224 IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY 283
           + S  + PP+                 DD    ++  +       +     + + N    
Sbjct: 251 VASSTNFPPYTM---------------DDQNVAQRLHISQVNHPIISGTAAYFSQNFEHL 295

Query: 284 TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY 343
           ++ +             ++L    +                 V   P   F    G + +
Sbjct: 296 SQIKTSHQSSFYINGEKQFLDVVRYQDKWGLNWL-------IVVVMPESDF---MGRINH 345

Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403
            N     +    ++      G    +  A +++           +  +     +  +   
Sbjct: 346 -NAKITFMLSLVALAITICIG----IFMASRVTRPIVNLNKAARKFAQGDWEHTVHISRC 400

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
           Q   E + +   +  +    F E   QN +           R++      L   LEA   
Sbjct: 401 QEVGELAESFNQMAAQIRQSFSELEAQNSLSEALN------RQLSDREYWLKQFLEALPV 454

Query: 464 GIAIINREGIILSTNR------AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY-LTEI 516
           G+ + ++ G I   N+          +    +E+            +         L   
Sbjct: 455 GVLVYDKHGKIYYANQKLKKLFRAEHIPEVSLEEFAEINHLYLSSTDQLYPTKALPLVRA 514

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY--SLTMHDISEWKQEKNKLSHA 574
           L                 +    SL                    DI++ +Q + +  + 
Sbjct: 515 LKGKTVPIENIEIRHPD-QTICCSLMATPIFDSEEDIVYGIGVFEDITQRRQAEIERQNF 573

Query: 575 KKIAEKESSH-------KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
            K  ++++         K +FLA  SHE+RTPL  +IG SE + +   GPL      +  
Sbjct: 574 TKQLKEKNDALKRMDELKDEFLANTSHELRTPLNGMIGLSESMLDGVAGPLT-ELQRQNL 632

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
           + I +SG+ +  +VND+LD SK+    + L  +P+ L E V   + L +     K I + 
Sbjct: 633 SMIAKSGHRLSTLVNDILDFSKLRHQTLELQLQPLGLREIVEVVVVLSKPLIGNKDIELI 692

Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS----NEEVILRVRD 743
               ++ P + AD   ++QI  N++ NAI FT SG  + I+ +       N   ++ + D
Sbjct: 693 NEIPDDFPAVNADENRLQQILYNLIGNAIKFTDSG-TVKITASVLDTDANNSMAVINISD 751

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TG+G+   +  +  + F Q   S   +  GTGLGL + K +V+ + GK ++ S    G+ 
Sbjct: 752 TGIGILPEKHHRIFESFEQGDGSTARQYGGTGLGLAITKQLVELHQGKIWLDSVVGSGST 811

Query: 804 IEIIFPLYDT 813
                P+ + 
Sbjct: 812 FSFTLPISEE 821


>gi|254415604|ref|ZP_05029363.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196177554|gb|EDX72559.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 1156

 Score =  355 bits (911), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 97/550 (17%), Positives = 206/550 (37%), Gaps = 52/550 (9%)

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEI 362
             R   +               V+  P+    +     +   +     +  +K+ + +  
Sbjct: 125 EIRERKTAETELQHTLQRLTFHVENSPLAVIEWDSHHRVQRWSQQAEQIFGWKAEEALGR 184

Query: 363 AGGLSTL-LDAPKLSDNNAIKPV------------MLYRSDRTCIAASARLHTIQWNREN 409
                 L     + + N  +  +              Y  + + I        ++ + +N
Sbjct: 185 QIDELQLVFTEDRDAVNVVMTNLLDGSTPRSICCNRNYTKEGSVIDCEWYNSALRDDADN 244

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK--------RKMEIEVMQLCSILEAT 461
            +++  +  +  ++         +  E       +        + +E E  QL  I+   
Sbjct: 245 LVSILSLALDITSRKQAETALKQVNVELEHRVEERTTQLQQLNQHLEQERQQLRQIITVA 304

Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
              +A+ +R+   L+ ++    ++    + ++ +          P          L  ++
Sbjct: 305 PVAMAMFDRQMRYLAHSQQWLTIYSLDEQSLINRCHYDIF-PELPEPWREAHQRALQGEI 363

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKK----LPFSSCYSLTMHDISEWKQEKNKLSHAKKI 577
               E   +    +   +     I              L    I+E  +        +  
Sbjct: 364 ITKSED--VWQRADGTTIYEHWAIHPWYTSTGDVGGIVLACFPINELVEA-------RDA 414

Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
           A   +  KS FLA +SHEIRTP+  ++G   ++         NP+ + Y   I+     +
Sbjct: 415 ALATARLKSKFLANMSHEIRTPINGVLGMMRLLLQTDL----NPQQLNYTRTIESCAKHL 470

Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-R 696
           L ++ND+LD+SK+E+GKM L     SLD  +   I ++ + A  K + +     +N+P +
Sbjct: 471 LTVINDILDVSKLEAGKMLLEQIDFSLDSCLDSVIDVLAVQAETKGLELAILVESNVPRQ 530

Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----------EVILRVRDTGV 746
           + +D   ++QI LN++ NAI FT +G ++++    + ++           +   V DTG+
Sbjct: 531 LQSDPGRLRQILLNLVGNAIKFTDAG-EVVVRVAVSRHQPTDTLSQSSVTLRFSVTDTGI 589

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G++  +  K  + F Q+  S   R  GTGLGL + + +V+   GK  + S   +G+    
Sbjct: 590 GISAADQSKLFQAFSQVEASTTRRYGGTGLGLVICQQLVELLGGKIGVESKVGQGSTFWF 649

Query: 807 IFPLYDTSHP 816
             P+     P
Sbjct: 650 TVPVKTQPLP 659



 Score = 77.8 bits (190), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 20/160 (12%), Positives = 55/160 (34%), Gaps = 7/160 (4%)

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
           +  E  + +  + +++  + +L   +E +   +   +    +   ++   ++FG+  E+ 
Sbjct: 122 LAQEIRERKTAETELQHTLQRLTFHVENSPLAVIEWDSHHRVQRWSQQAEQIFGWKAEEA 181

Query: 493 LRKPFT--VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
           L +       +       +N  +T +L     +++       TKE  ++        L  
Sbjct: 182 LGRQIDELQLVFTEDRDAVNVVMTNLLDGSTPRSICC-NRNYTKEGSVIDCEWYNSALRD 240

Query: 551 SSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
            +           DI+  KQ +  L       E     ++
Sbjct: 241 DADNLVSILSLALDITSRKQAETALKQVNVELEHRVEERT 280



 Score = 48.5 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 39/439 (8%), Positives = 116/439 (26%), Gaps = 24/439 (5%)

Query: 59  QESVSNTNYLDSENTFVFDPIPRTVRFT-WNIDAHGYLKEISEELPKTIGNYAFKMIGMR 117
           +   + T    +     F      +    W  D+H  ++  S++  +  G  A + +G +
Sbjct: 128 ERKTAETELQHTLQRLTFHVENSPLAVIEW--DSHHRVQRWSQQAEQIFGWKAEEALGRQ 185

Query: 118 LCD--VSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREF 175
           + +  +      D  N +   L   +T                +  +     +       
Sbjct: 186 IDELQLVFTEDRDAVNVVMTNLLDGSTPRSICCNRNYTKEGSVIDCEWYNSALRDDADNL 245

Query: 176 SGFRGFGIVHVNRVDNDPRALGK----RLDKKFSHLHEIKKGHSSVEKEKYDIFS--QQS 229
                  +              K     L+ +        +  +   +++          
Sbjct: 246 VSILSLAL--DITSRKQAETALKQVNVELEHRVEERTTQLQQLNQHLEQERQQLRQIITV 303

Query: 230 PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYF 289
            P  + M ++      +      +   ++  L+      +  +        +Q   +   
Sbjct: 304 APVAMAMFDRQMRYLAHSQQWLTIYSLDEQSLINRCHYDIFPELPEPWREAHQRALQGEI 363

Query: 290 GTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANP--- 346
            T   +  +  +  +   H ++  ++    ++    +   PI   V +            
Sbjct: 364 ITKSEDVWQRADGTTIYEHWAIHPWYTSTGDVGGIVLACFPINELVEARDAALATARLKS 423

Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
            FL    ++    I    G+  LL    L+         +    +  +     +  +   
Sbjct: 424 KFLANMSHEIRTPINGVLGMMRLLLQTDLNPQQLNYTRTIESCAKHLLTVINDILDVSKL 483

Query: 407 RENSLAMTFIP-------FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI-L 458
               + +  I            +         G+E   +      R+++ +  +L  I L
Sbjct: 484 EAGKMLLEQIDFSLDSCLDSVIDVLAVQAETKGLELAILVESNVPRQLQSDPGRLRQILL 543

Query: 459 EATSDGIAIINREGIILST 477
               + I   +   +++  
Sbjct: 544 NLVGNAIKFTDAGEVVVRV 562


>gi|302039214|ref|YP_003799536.1| putative sensor histidine kinase [Candidatus Nitrospira defluvii]
 gi|300607278|emb|CBK43611.1| putative Sensor histidine kinase [Candidatus Nitrospira defluvii]
          Length = 892

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 117/739 (15%), Positives = 248/739 (33%), Gaps = 47/739 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYG-- 145
           +D    +   ++   K     A +++G  L  +         + HI +  +   T     
Sbjct: 181 VDEAHKIVLFNQAAEKMFQWGAEEVLGRPLDRLLPERFRSAHDEHIREFGRSGITTRQMG 240

Query: 146 -KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIV-HVNRVDNDPRALGKRLDKK 203
               +  +       PI+ A   I        G R + ++                 +  
Sbjct: 241 ALGMVMGVRANGEEFPIEAAISQIG-----VEGTRYYTVILRDITERIRLEQELAEREAL 295

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPP----PHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
              + E +     +      I +  +            + +          +      + 
Sbjct: 296 LRAIIETEPECVKLLNLDGTIRTINAAGLAMIEATSGADVIGRDACRLVTDEFRSVYREL 355

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL----SAYF 315
                   +   + +   +         +   L++        L      +      A  
Sbjct: 356 VGKAGRGEAGRLEFEMVGLLGTHRWLDTHVVPLRSADGTVTAVLGVTRDVTEWKKTEALL 415

Query: 316 DEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
            + E+     +   P    V   G + + N   + L   +S ++I         L  P  
Sbjct: 416 RQSEDRYRRLLAVLPDAILVNREGRIIFTNEQGVRLFGARSGEEILGKSLYD--LAHPDY 473

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
            +    +   L R     +        ++ +    +++         Q  E      +  
Sbjct: 474 HELIGERIRHLLR-PGNTVP-EVEEKIVRLDG---VSVDVAVRAARFQDEEGFGILVVLR 528

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG-IILSTNRAVSKLFGYPVEDILR 494
           +    +  ++K+     +L S+L A  D I   + +   +   + +V +++G P +  L 
Sbjct: 529 DISMRKAAEQKLRESEERLQSLLGAMEDVIWSSSLDLSTMFYVSPSVMEIYGRPTDAFLA 588

Query: 495 KP-FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS- 552
           +P   +        V+     + LS      +E   +    + + L  R  + K      
Sbjct: 589 RPSLWLEAVHPDDRVIAEQARQALSTMGEFDVEYRIVRLDGDLRWLHDRGRVIKDAEGRP 648

Query: 553 -CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
                   DI+E K+ + +L   +++AE  +       + ++HEI TP+  I+G +E + 
Sbjct: 649 LRIDGIASDITERKRLQAQLRRTERVAELGTVA-----SGMAHEIGTPMNVILGRAEYLM 703

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
            +           +    I      +  ++N LL  ++    +  +    + L + + + 
Sbjct: 704 ER----TKEEPVRKGLQTIVSQVERITRVMNQLLAFAR----RRPVEHRALDLRQTIEDN 755

Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
           + + Q   +   I + TSFA+  P + AD   + Q+ +N++ NAIH  P GG + ++ T 
Sbjct: 756 LEIFQERLSHSNISVETSFADACPLVHADADQMSQVLINLVMNAIHAMPGGGLLKLALTP 815

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
                V L V DTG GM    + K   PF          G+GTGLGL + K +++ + G 
Sbjct: 816 -DRGMVRLTVADTGHGMPRDVIAKVFDPFFTTK----EFGKGTGLGLTVVKGIIEEHSGT 870

Query: 792 FYIFSTPAKGTLIEIIFPL 810
             + S P +GT   I  P+
Sbjct: 871 IEVESEPERGTTFTICLPI 889



 Score = 89.3 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 26/179 (14%), Positives = 65/179 (36%), Gaps = 7/179 (3%)

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC--SILEATSDGIA 466
            + A    P        E   +             + + E+   +L    I+ +  D I 
Sbjct: 120 TARAERHQPEAIGASDAEARARAEAAVVGAVDGQRRAEAELHQDKLRFEGIVHSAMDAII 179

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL- 525
            ++    I+  N+A  K+F +  E++L +P    L +   S  + ++ E     +     
Sbjct: 180 TVDEAHKIVLFNQAAEKMFQWGAEEVLGRPLDRLLPERFRSAHDEHIREFGRSGITTRQM 239

Query: 526 --EKITLGSTKEEKLLSLRIIIKKL--PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
               + +G     +   +   I ++    +  Y++ + DI+E  + + +L+  + +   
Sbjct: 240 GALGMVMGVRANGEEFPIEAAISQIGVEGTRYYTVILRDITERIRLEQELAEREALLRA 298


>gi|17230934|ref|NP_487482.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17132575|dbj|BAB75141.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 865

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 113/566 (19%), Positives = 221/566 (39%), Gaps = 37/566 (6%)

Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP------- 323
           ++      + + +          N+  +    +      + S   +E             
Sbjct: 166 DEFRIVWPDKSIHWIAAKGRFFYNDQGQPVRMIGVCMDITKSKRTEENNRQLATQVQEQA 225

Query: 324 ----ETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
                 +       +++   G+  Y +     +        I     +  L    +L D 
Sbjct: 226 NVLNAILATSVDHIYIFNRTGHYQYVSHGGAAVLGLYPQQMIGKT--VQELNLPQELIDK 283

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
              + + + ++             +  + ++       P    +   E      +  +  
Sbjct: 284 VNGQFLAVMKA---GKPVKDECEYVAADGKHYYEYILTPLRNIDHNIE--GVITVSRDMT 338

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED---ILRK 495
           + +  ++ +     +   + E+   G+A  N +G I   N A  +L GY  E    + + 
Sbjct: 339 EHKRAEQSIRNSEARFRRLFESNLIGVAFWNVDGFITDANDAYLQLVGYTREQFNTLGKI 398

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555
            +      +   + +  + E+ +  + +  EK  +        + L I +         +
Sbjct: 399 NWRELTPPDYKHLDDRAIAEVKTNGISRIYEKQYIQRNGRRVSIVLGIALLDDSDEQGVA 458

Query: 556 LTMHDISEWKQEKNKLSH-------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
             + DISE K  + +          A+K AE  +  K +FLA +SHE+RTPL  I+G+S+
Sbjct: 459 FVL-DISERKLAEQQRDRLLCAERIARKDAEIANRIKDEFLAVLSHELRTPLNPILGWSK 517

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
           ++++++F      R       I+R+  L   ++ DLLD+S+I  GK++L+  PVSL   +
Sbjct: 518 LLRSRQFDAATTDRA---LETIERNATLQTQLIEDLLDVSRILQGKLSLNICPVSLPIVI 574

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
             AI  V+L A  K I I+  F  N+ +++ D   ++Q+  N+LSNA+ FT  GG + I 
Sbjct: 575 GAAIDTVRLAAEAKEIKIQNVFDPNLGQVMGDANRLQQVVWNLLSNAVKFTSPGGTVEIH 634

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                N++  ++V DTG G+T   L      F Q   +      G GLGL + + +V+ +
Sbjct: 635 LKAV-NDQAQIQVIDTGKGITPEFLPYVFDYFRQADGTTTRNFGGLGLGLAIVRQVVELH 693

Query: 789 MGKFYIFSTPAK--GTLIEIIFPLYD 812
            G     S P    G    +  PL  
Sbjct: 694 GGTVQAKS-PGDGLGATFTVNLPLSP 718



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/377 (10%), Positives = 98/377 (25%), Gaps = 35/377 (9%)

Query: 93  GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI--DPNNHIGDLLKRQNTWYGKTTLW 150
           G+ + +S      +G Y  +MIG  + +++    +    N     ++K       +    
Sbjct: 246 GHYQYVSHGGAAVLGLYPQQMIGKTVQELNLPQELIDKVNGQFLAVMKAGKPVKDECEYV 305

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
             +G + Y   +    P+ + +    G     +              +  + +F  L E 
Sbjct: 306 AADGKHYY---EYILTPLRNIDHNIEGV--ITVSRDMTEHKRAEQSIRNSEARFRRLFES 360

Query: 211 KKGHSSVEKEKYDIFSQQSPPPH-----LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
                +       I                  N +  +        D    +   +   +
Sbjct: 361 NLIGVAFWNVDGFITDANDAYLQLVGYTREQFNTLGKINWRELTPPDYKHLDDRAIAEVK 420

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
            + +    +   I  N        G +        + ++     S     ++        
Sbjct: 421 TNGISRIYEKQYIQRNGRRVSIVLG-IALLDDSDEQGVAFVLDISERKLAEQQR------ 473

Query: 326 VDKCPIPFFVYSHGNLFYANP---SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
            D+      +        AN     FL +  ++    +    G S LL + +       +
Sbjct: 474 -DRLLCAERIARKDA-EIANRIKDEFLAVLSHELRTPLNPILGWSKLLRSRQFDAATTDR 531

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
            +         I  +A L T          +      +        P +           
Sbjct: 532 AL-------ETIERNATLQTQLIED----LLDVSRILQGKLSLNICPVSLPIVIGAAIDT 580

Query: 443 NKRKMEIEVMQLCSILE 459
            +   E + +++ ++ +
Sbjct: 581 VRLAAEAKEIKIQNVFD 597



 Score = 54.6 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 22/216 (10%), Positives = 57/216 (26%), Gaps = 4/216 (1%)

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
             +   L + ++        L     + +  L    I         E +    ++ E   
Sbjct: 19  RQRIAELEQLEKQYQHKQVELERHIEDLQAKLRTLHITNVDIESHLEPVTLQRLQQEISQ 78

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR--KPF 497
            +     +     +    L+A + G    N     +  +    +LFG          + F
Sbjct: 79  RQQVDAALTESEERWRLALDAANLGFWDWNVLTAKVVWSENHERLFGLVSGSFDGTYETF 138

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYS 555
              +       +   +   L        E   +   K    ++ +               
Sbjct: 139 LSCVHPEDRESVIQVIGVCLENKTDYYDEFRIVWPDKSIHWIAAKGRFFYNDQGQPVRMI 198

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
               DI++ K+ +          +++++  +  LA 
Sbjct: 199 GVCMDITKSKRTEENNRQLATQVQEQANVLNAILAT 234



 Score = 45.0 bits (105), Expect = 0.050,   Method: Composition-based stats.
 Identities = 40/338 (11%), Positives = 104/338 (30%), Gaps = 25/338 (7%)

Query: 69  DSENTFV--FDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM--IGM-RLCDVSD 123
           +SE  F   F+     V F WN+D  G++ + ++   + +G    +   +G     +++ 
Sbjct: 349 NSEARFRRLFESNLIGVAF-WNVD--GFITDANDAYLQLVGYTREQFNTLGKINWRELTP 405

Query: 124 ILH--IDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF 181
             +  +D +  I ++     +   +       G    V I L  + +   + E    +G 
Sbjct: 406 PDYKHLD-DRAIAEVKTNGISRIYEKQYIQRNGR--RVSIVL-GIALLDDSDE----QGV 457

Query: 182 GIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK--NK 239
             V              RL        +  +  + ++ E   + S +   P   +   +K
Sbjct: 458 AFVLDISERKLAEQQRDRLLCAERIARKDAEIANRIKDEFLAVLSHELRTPLNPILGWSK 517

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
           +    ++ A   D          T +   + +  D   I   + +      +L      +
Sbjct: 518 LLRSRQFDAATTDRALETIERNATLQTQLIEDLLDVSRILQGKLSLNICPVSLPIVIGAA 577

Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETV---DKCPIPFFVYSHGNLFYANPSFLLLTKYKS 356
            + +            +  +    + +   ++     +      + + +P   +    K+
Sbjct: 578 IDTVRLAAEAKEIKIQNVFDPNLGQVMGDANRLQQVVWNLLSNAVKFTSPGGTVEIHLKA 637

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394
           V+D      + T        +          ++D T  
Sbjct: 638 VNDQAQIQVIDT--GKGITPEFLPYVFDYFRQADGTTT 673


>gi|167461323|ref|ZP_02326412.1| Sensory box histidine kinase YycG [Paenibacillus larvae subsp.
           larvae BRL-230010]
 gi|322381341|ref|ZP_08055344.1| two-component sensor histidine kinase YycF-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
 gi|321154917|gb|EFX47188.1| two-component sensor histidine kinase YycF-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
          Length = 608

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 83/371 (22%), Positives = 158/371 (42%), Gaps = 27/371 (7%)

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
           E E  +L SIL   +DG+   +  G ++  NR   ++     E    KP +  L  +   
Sbjct: 259 EEEKEKLSSILANMNDGVIATDDSGRVIVMNRRAKQILQVKEEQWFGKPLSRLLGIS--- 315

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWK 565
                +TE    +    L         E+  + +                  + D++E +
Sbjct: 316 --QEIVTEYSQHENTTLL--ELKLDEDEKIWVRVTFTPIHRRGEGITGSIAVLQDVTEQE 371

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + +                + +F+A VSHE+RTPLT I  + E + +   G + +P+  E
Sbjct: 372 KLE--------------RSRKEFVANVSHELRTPLTTIKSYLEALGD---GAIEDPQLSE 414

Query: 626 -YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
            +          ++ +V DLL +S+++S +  L   P ++ + + E      + + +++I
Sbjct: 415 RFLGVTRNETERMIRLVTDLLHLSRLDSNQATLVKTPTNISDMLEEVADRFAVQSRQRKI 474

Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744
            I  S    +  I  D   + Q+  N+LSNAI +T   G + I      ++ V + V DT
Sbjct: 475 RIDVSVDARVGSISIDRDKIDQVLDNLLSNAIKYTADEGIVRIQANRLDHDWVEISVEDT 534

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G+   +L +  + F ++  ++     GTGLGL +A+ +V A+ G   + S    GT +
Sbjct: 535 GIGIPKKDLSRIFERFYRVDKARSRNMGGTGLGLSIAREIVKAHGGSIQLESEYNVGTRV 594

Query: 805 EIIFPLYDTSH 815
               P++    
Sbjct: 595 SFTLPVHHEEE 605



 Score = 40.4 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 28/300 (9%), Positives = 77/300 (25%), Gaps = 21/300 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            D  G +  ++    + +     +  G  L  +             +++   +     T 
Sbjct: 279 TDDSGRVIVMNRRAKQILQVKEEQWFGKPLSRLL--------GISQEIVTEYSQHENTTL 330

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           L      +  + + +   PI+ R    +G     ++             K      SH  
Sbjct: 331 LELKLDEDEKIWVRVTFTPIHRRGEGITG--SIAVLQDVTEQEKLERSRKEFVANVSHEL 388

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
                      E     + + P    ++  +   +T     +   L T+   L   + + 
Sbjct: 389 RTPLTTIKSYLEALGDGAIEDP----QLSERFLGVTRNETERMIRLVTDLLHLSRLDSNQ 444

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
               +    I+      ++        S++    +       + +   + + +     + 
Sbjct: 445 ATLVKTPTNISD---MLEEVADRFAVQSRQRKIRIDVSVDARVGSISIDRDKIDQVLDNL 501

Query: 329 CPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIE---IAGGLSTLLDAPKLSDNNAIKPV 384
                 +    G +              SV+D         LS + +     D    + +
Sbjct: 502 LSNAIKYTADEGIVRIQANRLDHDWVEISVEDTGIGIPKKDLSRIFERFYRVDKARSRNM 561



 Score = 38.1 bits (87), Expect = 6.0,   Method: Composition-based stats.
 Identities = 23/182 (12%), Positives = 44/182 (24%), Gaps = 23/182 (12%)

Query: 316 DEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
           +E +      +             G +   N     + + K          LS LL   +
Sbjct: 259 EEEKEKLSSILANMNDGVIATDDSGRVIVMNRRAKQILQVKEEQWFGKP--LSRLLGISQ 316

Query: 375 L-----SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
                 S +     + L   +   I        I    E       +  +   Q      
Sbjct: 317 EIVTEYSQHENTTLLELKLDEDEKIWVRVTFTPIHRRGEGITGSIAVLQDVTEQEKLERS 376

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
           +               ++   +  + S LEA  DG AI + +           +  G   
Sbjct: 377 RKEFVANVSH------ELRTPLTTIKSYLEALGDG-AIEDPQL--------SERFLGVTR 421

Query: 490 ED 491
            +
Sbjct: 422 NE 423


>gi|39935007|ref|NP_947283.1| sensor histidine kinase pleC [Rhodopseudomonas palustris CGA009]
 gi|39648858|emb|CAE27379.1| sensor histidine kinase, possible pleC [Rhodopseudomonas palustris
           CGA009]
          Length = 779

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 138/692 (19%), Positives = 260/692 (37%), Gaps = 71/692 (10%)

Query: 181 FGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV 240
            G+V ++R  +    L   L             H  V      I ++        + N+ 
Sbjct: 100 IGVVRLDRPASI-ERLQNLLPGLIPTWGIAPGRHVIVTSADQRILARVPIGTEPSVDNRF 158

Query: 241 SS-LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
              L      K     +     L    S+L       ++       ++  G+L  +    
Sbjct: 159 LEILGAASLTKSGQQSSISEITLPGGASALATMHVVKSLPGQVVIIQEDTGSLLRSDTAL 218

Query: 300 FEYL-----------------SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH--GN 340
              L                             D   +     +++     + +    G 
Sbjct: 219 QVTLSATTGFVVLILGFAFHWQSTRAREGDLINDAVRSRIDTALNRGRCGLWDWDLSRGR 278

Query: 341 LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400
           + + + S   +   +S +D+   G ++ L+    +        +M               
Sbjct: 279 I-FWSQSMFTILGLESRNDLLTFGEVNALVKGEDIDLFAIADELMA----GRVDHID-HS 332

Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
             ++    + + +                  GI  +  + +    +     ++L   +E 
Sbjct: 333 FQMRHAHGHWIWLRMRCELTQEAGATEKHLIGIAVDITEQKSLAERSVEADLRLRDAIET 392

Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLTEILSL 519
             +   + + E  ++  N    +L   P   +     +   LE      +    T +   
Sbjct: 393 IPEAFVLWDAENRLVLCNSHFQRLHKLPDSAVTPGTSYETILEVGRMPQLR---TRLCDN 449

Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA----- 574
                  +       +   L +    ++      Y     DI+  K  + KL        
Sbjct: 450 GAVMPGARTFEAQLDDGSWLHIS---ERRTKDGGYVAVGTDITRIKAHEQKLVDNDLRLR 506

Query: 575 ------------------------------KKIAEKESSHKSDFLARVSHEIRTPLTAII 604
                                         K+ AE+ +  KS FLA +SHE+RTPL AII
Sbjct: 507 ATVADLKITQSKLEKQALELADLARKYADEKRRAEEANQTKSKFLANMSHELRTPLNAII 566

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           GFSE++ +  FG LG+ +Y EY + I  SG+ +L+++ND+LD+SKIE+G+M L  EP+ L
Sbjct: 567 GFSEIMGSGMFGTLGSEKYQEYCHDIMTSGHYLLEVINDILDMSKIEAGRMRLEMEPLDL 626

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724
            + + E++ +V   A  K + +R+   + IP I+AD R++KQI +N+LSNA+ FTP  G+
Sbjct: 627 AKTIGESVKVVAGRAEHKHLELRSELNDQIP-IVADRRAIKQILINLLSNAVKFTPDAGR 685

Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
           + +   H +   ++L + DTG+G+    L +  +PF Q+ +       G+GLGL +AK++
Sbjct: 686 VTVR-GHLAGGSIVLMIADTGIGIPPQSLRRLGQPFEQVESQLTKSYHGSGLGLAIAKSL 744

Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           V+ + G   + ST   GT++ +  P      P
Sbjct: 745 VNLHGGSMRLRSTLGAGTVVMVSLPRTCQQRP 776


>gi|146339710|ref|YP_001204758.1| sensor histidine kinase [Bradyrhizobium sp. ORS278]
 gi|146192516|emb|CAL76521.1| Putative sensor histidine kinase with a PAS domain [Bradyrhizobium
           sp. ORS278]
          Length = 610

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 118/419 (28%), Positives = 191/419 (45%), Gaps = 17/419 (4%)

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
           E + A+                       D   R +   + +E  +   +    SD I+ 
Sbjct: 160 ETNPALRTSLLAFGVASATLYAAVLAFAADTLARTSVTLLSMEEERYRLLARNMSDVISR 219

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
             R G ++  + AV  L G PV  +        +           L+E        ++E 
Sbjct: 220 HRRNGAVMFISPAVETLLGAPVAQLHGHGLFERVHVADRPAYLTALSEAAGGSEASSVEF 279

Query: 528 ITLGSTKEEK--------LLSLRIIIKKLPF--------SSCYSLTMHDISEWKQEKNKL 571
                   E          + + +  + L                 M D+++ K ++  L
Sbjct: 280 RLRRDAPGEGRAGQQSVDFIWVEMRCRPLDRAGVTCAGTDQEVVAVMRDVTDRKLQEQAL 339

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
             A+  AE+  + K+ FLA +SHE+RTPL AIIGFSE++  ++   L   R  EYA  I+
Sbjct: 340 ELARSAAERADAAKTRFLATMSHELRTPLNAIIGFSEMLMQEQVLVLNAARRREYAQLIN 399

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
            SG  +L +VN +LD+SK+ESG   L  EP +   A+    +L+ L A E  + +     
Sbjct: 400 DSGQHLLSVVNGILDMSKMESGHFELTPEPFAPRTALFNCCNLLALRARENGVDLAADAP 459

Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751
           +++P I  D R+ KQI +N++SNAI FT  GG++ +S        ++LR+ DTGVG+   
Sbjct: 460 HDLPVITGDPRAFKQIVINLVSNAIKFTERGGRVTVSAGV-DGARLLLRITDTGVGIAAD 518

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           +L++   PF Q   + Q R EGTGLGL + K++V  + G+  I S   +GT + I  P+
Sbjct: 519 DLKRIGDPFFQAGKTYQRRHEGTGLGLSIVKSLVTLHGGEMSIESKLDEGTTVTIALPI 577



 Score = 38.1 bits (87), Expect = 6.3,   Method: Composition-based stats.
 Identities = 9/147 (6%), Positives = 31/147 (21%), Gaps = 13/147 (8%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150
            +G +  IS  +   +G    ++ G  L +   +                +         
Sbjct: 222 RNGAVMFISPAVETLLGAPVAQLHGHGLFERVHVADRPAYLTALSEAAGGSEASSVEFRL 281

Query: 151 PIEGTNL---------YVPIDLAALPIYSRNR---EFSGFRGFGIVHVNRVDNDPRALGK 198
             +             ++ +++   P+  R       +      ++             +
Sbjct: 282 RRDAPGEGRAGQQSVDFIWVEMRCRPL-DRAGVTCAGTDQEVVAVMRDVTDRKLQEQALE 340

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIF 225
                       K    +    +    
Sbjct: 341 LARSAAERADAAKTRFLATMSHELRTP 367


>gi|158338408|ref|YP_001519585.1| two-component hybrid sensor and regulator [Acaryochloris marina
           MBIC11017]
 gi|158308649|gb|ABW30266.1| two-component hybrid sensor and regulator [Acaryochloris marina
           MBIC11017]
          Length = 1076

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 127/684 (18%), Positives = 245/684 (35%), Gaps = 77/684 (11%)

Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS- 241
           +V   R  +  + L K    +   + +    +S    E       Q       M +  + 
Sbjct: 134 LVREVRQGDRSQGLTKNSTARLQDMLDNVLLYSLSANEALVPQINQQMTQLEAMSHAEAN 193

Query: 242 --SLTEYYAHKDDVLKTEK-YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE 298
              L    AH   +L+ +     LT      P  E  + +      + Q      N  + 
Sbjct: 194 KEGLLLAIAHTRIILEYKPKVDQLTQTILQQPTSEAINQLEALYTKQHQSASQTANIFRL 253

Query: 299 S-----------FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANP 346
                         YL  R   +L     + +      +      F   +    + Y N 
Sbjct: 254 ISFGCLLIILGGTAYLVIRRQWALIQEQQQSQQRISGILSSITDAFITLNPEWQVVYINE 313

Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
               L      D      G+          +         + + +  I+ S  +      
Sbjct: 314 KAAELFGQGLQD------GIHQNFWQTYPQELGLDHQENYHTALQDQISQSFEVFY---- 363

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM-------EIEVMQLCSILE 459
             + + +    F   +     +       +    ++ +  +       +     L  +++
Sbjct: 364 ANSQIWLEVRIFPSVDGLSLFL------QDITPRKLAEAHLVQMNEDLKTSQQLLRRVID 417

Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGYP-VEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
                +   +REGI L  N   +   G    E ++ K          P  +  +  +   
Sbjct: 418 TIPQLLFWKDREGIYLDCNLQFATYVGLSQPEQVVGKTDADL--PWAPPELAAF--QASE 473

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKN----- 569
             +  T E  T    +      L  I   L  +            D++  +Q        
Sbjct: 474 QRILTTGEIETALLKRHNPDTWLETIKVPLHQADGTIMGILGVYQDVTARQQADAKLRNV 533

Query: 570 --KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
             +L  AK  A+  S  KS+FLA +SHE+RTP+ A+IG + ++ +       + +  ++ 
Sbjct: 534 NAELQTAKDRADAASQVKSEFLANMSHELRTPMNAVIGMTGLLTHTSL----DAQQQDFV 589

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
           + I  SG+ +L ++ND+LD SKIE+GK+ +  +P +L   + EA+ LV   A +K + I 
Sbjct: 590 DTIRSSGDALLCLINDILDFSKIEAGKLEVEEQPFNLKSCIEEALKLVAPRAFKKGLEIA 649

Query: 688 TSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII----ISTTHTSNEE------ 736
                ++P  I+ D+  ++Q+ +N+L+N + FT +G  I+    ++      E       
Sbjct: 650 YLADPDLPCGIVGDVTRLRQVLVNLLTNGVKFTDNGEVIVYVKEVTAEIQDREGSGSEGQ 709

Query: 737 -----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
                    V+DTG+G+    L +  + F Q+ +S   +  GTGLGL ++K + +   GK
Sbjct: 710 SPRRLFQFAVKDTGIGIPEDRLNRLFQSFSQVDSSTTRKYGGTGLGLAISKRLCELMGGK 769

Query: 792 FYIFSTPAKGTLIEIIF--PLYDT 813
            ++ S    G+        P+ DT
Sbjct: 770 IWVDSEIGIGSTFTFTIAAPIADT 793



 Score = 40.4 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 25/310 (8%), Positives = 62/310 (20%), Gaps = 29/310 (9%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL-HIDPNNHIGDLLKRQNTWYGKT 147
           ++    +  I+E+  +  G      I             +D   +    L+ Q +   + 
Sbjct: 302 LNPEWQVVYINEKAAELFGQGLQDGIHQNFWQTYPQELGLDHQENYHTALQDQISQSFEV 361

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA-------LGKRL 200
                   N  + +++   P         G   F  +          A         K  
Sbjct: 362 FY-----ANSQIWLEVRIFP------SVDGLSLF--LQDITPRKLAEAHLVQMNEDLKTS 408

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQ---SPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257
            +    + +        +  +          +    L    +V   T+            
Sbjct: 409 QQLLRRVIDTIPQLLFWKDREGIYLDCNLQFATYVGLSQPEQVVGKTDADLPWAPPELAA 468

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
                    ++   +      +      +     L          L      +     D 
Sbjct: 469 FQASEQRILTTGEIETALLKRHNPDTWLETIKVPLHQADGTIMGILGVYQDVTARQQADA 528

Query: 318 GENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
                   +                     FL    ++    +    G++ LL    L  
Sbjct: 529 KLRNVNAELQTA-----KDRADAASQVKSEFLANMSHELRTPMNAVIGMTGLLTHTSLDA 583

Query: 378 NNAIKPVMLY 387
                   + 
Sbjct: 584 QQQDFVDTIR 593


>gi|119487282|ref|ZP_01621033.1| hybrid sensory kinase [Lyngbya sp. PCC 8106]
 gi|119455837|gb|EAW36972.1| hybrid sensory kinase [Lyngbya sp. PCC 8106]
          Length = 1259

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 133/753 (17%), Positives = 270/753 (35%), Gaps = 52/753 (6%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQ-NTWYGK 146
            +   G   ++++ L +  G    +++ +    ++    ++ + + I  L+  +  T+  +
Sbjct: 282  VSLEGNFFKVNQSLCELTGYSEVELLSINFQSITFPQDLEIDLNYIKQLIAGEIRTYKME 341

Query: 147  TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
               +   G    V + L    + +  ++   F     +             ++ ++  + 
Sbjct: 342  KRYFHKNGEI--VWVLLNGSLVRNEQQQPLYF--IAQIQDISERKQSEKYLQKYERIIAA 397

Query: 207  LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA---HKDDVLKTEKYPLLT 263
              +            Y++ +      + +  ++V              + +   K+    
Sbjct: 398  NSDAVC--LVDCNYTYNLANLAYLNWYHKSLDEVLGNQVSNVIGESLFEQVVKPKFEACL 455

Query: 264  SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
            + E    E+    T N  +      +   +    +    +      +     +E    T 
Sbjct: 456  TGEIIQYERWFNDTDNSQRKFISITYTPYRELDHKITGIVVSIRDLTALKLTEESLRQTE 515

Query: 324  ETVDKCPIPF------FVYSHGN---LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
            E +              V          Y +     +   ++ D I  A  +   +    
Sbjct: 516  ERLQLIASNIPGVMYTIVEELDETWTFEYLSEGCHEVLGVEAKDAIANANQIMQRIHPED 575

Query: 375  LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
            L  +   +   + + + T  +   R             +      K  +  E +  +G+ 
Sbjct: 576  LPKH--NQAATISKQNLTPFSEEWR---YILPSGQVRWILDNARPKRRENGETV-WHGVM 629

Query: 435  PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
             +  D +  +  ++    +L   LEA    I     + I    +     +      +  +
Sbjct: 630  LDISDGKQAEIALQESQERLYRTLEAGR--IICWEEDLISQEVSGWGKNIADNWKANFWK 687

Query: 495  KPFTVF---LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
             P       +               +       +E    G   E+  +  +         
Sbjct: 688  YPLEFAPEGIYFEDRDRAVEAKENAIKTKGEFQVEHRLTGF-PEKIWMLAKGKAVVNNDG 746

Query: 552  S--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                      DIS+ K  + +L  AK+ AE  +  KS FLA +SHE+R+PL AI+GF++V
Sbjct: 747  EVTRVVGVAIDISDRKAAETELVKAKEAAEVANQAKSIFLANMSHELRSPLNAILGFTQV 806

Query: 610  IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
            I           +     N I RSG  +L ++N++LD+SKIE+GK+ L  EP  L + + 
Sbjct: 807  I---NGSSNLTTQQQNNLNIIQRSGEHLLGLINEILDLSKIEAGKIILIQEPFDLWKLIE 863

Query: 670  EAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
            E   L ++ A++K + +      N+PR I  D   ++QI +N+LSNAI FT  G  + + 
Sbjct: 864  ELQDLFRIKASQKNLKLTVIINPNLPRYIQTDRVKLRQILINLLSNAIKFTQKG-TVCLE 922

Query: 729  TTHTSNE------------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
               +               ++  RV DTGVG+   E++    PF Q  +  Q + +GTGL
Sbjct: 923  ADLSETSPVCLIGTETLPVQLHFRVSDTGVGIEPDEIDNLFSPFVQTQSGIQSQ-QGTGL 981

Query: 777  GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            GL + K  +    GK  + S P  GT+ ++  P
Sbjct: 982  GLAICKGYIKLFGGKIEVHSQPRVGTVFDLEMP 1014



 Score =  117 bits (294), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 39/510 (7%), Positives = 126/510 (24%), Gaps = 35/510 (6%)

Query: 94  YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIE 153
                +    +  G    ++ G    +       +  N                     +
Sbjct: 162 RYVSYNPAAERFSGFSTSEIQGKTANEFMPTAVANQVNQKFLTCLDAQESITFEEHLFFK 221

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
           G   +    L   P+          +  G               +  +++F    +    
Sbjct: 222 GEERWFLTTL--TPLQDPQGNIK--QIIGTATNINDRKQAEQRLQESEERFRRAFDDAAI 277

Query: 214 HSSVEKEKYDIFSQQSPPPHLRMKNKVSSL-----TEYYAHKDDVLKTEKYPLLTSEESS 268
             ++   + + F        L   ++V  L     +  +    ++       L+  E  +
Sbjct: 278 GKALVSLEGNFFKVNQSLCELTGYSEVELLSINFQSITFPQDLEIDLNYIKQLIAGEIRT 337

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
              ++ +   N            ++N  ++   +++     S     ++        +  
Sbjct: 338 YKMEKRYFHKNGEIVWVLLNGSLVRNEQQQPLYFIAQIQDISERKQSEKYLQKYERIIAA 397

Query: 329 CPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGL---STLLDAPKLSDNNAIKPV 384
                 +         AN ++L        + +          +L +        A    
Sbjct: 398 NSDAVCLVDCNYTYNLANLAYLNWYHKSLDEVLGNQVSNVIGESLFEQVVKPKFEA---- 453

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
                    I      +    ++   +++T+ P+ + +   +         +    ++ +
Sbjct: 454 ---CLTGEIIQYERWFNDTDNSQRKFISITYTPYRELDH--KITGIVVSIRDLTALKLTE 508

Query: 445 RKMEIEVMQLCSILEATSDGIAI-----INREGIILSTNRAVSKLFGYPVEDIL--RKPF 497
             +     +L  I      G+       ++        +    ++ G   +D +      
Sbjct: 509 ESLRQTEERLQLIASNIP-GVMYTIVEELDETWTFEYLSEGCHEVLGVEAKDAIANANQI 567

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---Y 554
              +        N      +S        +         ++  +    +     +    +
Sbjct: 568 MQRIHPEDLPKHNQA--ATISKQNLTPFSEEWRYILPSGQVRWILDNARPKRRENGETVW 625

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
              M DIS+ KQ +  L  +++   +    
Sbjct: 626 HGVMLDISDGKQAEIALQESQERLYRTLEA 655



 Score =  102 bits (254), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 35/295 (11%), Positives = 89/295 (30%), Gaps = 18/295 (6%)

Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-----GNLFYANPSFLLLTK 353
           +    S      L+    E         +      FV              NP+    + 
Sbjct: 116 ALALPSPTQLKQLNQELKEKTQFLQSIYEGVEQAIFVLDVVENGIFRYVSYNPAAERFSG 175

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
           + + +     G  +       +++    K +    +  + I     L             
Sbjct: 176 FSTSEI---QGKTANEFMPTAVANQVNQKFLTCLDAQES-ITFEEHLFFK----GEERWF 227

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
                   +         G      D +  +++++    +     +  + G A+++ EG 
Sbjct: 228 LTTLTPLQDPQGNIKQIIGTATNINDRKQAEQRLQESEERFRRAFDDAAIGKALVSLEGN 287

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
               N+++ +L GY   ++L   F          +  +Y+ ++++    +T +       
Sbjct: 288 FFKVNQSLCELTGYSEVELLSINFQSITFPQDLEIDLNYIKQLIA-GEIRTYKMEKRYFH 346

Query: 534 KEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
           K  +++ + +    +         +   + DISE KQ +  L   ++I    S  
Sbjct: 347 KNGEIVWVLLNGSLVRNEQQQPLYFIAQIQDISERKQSEKYLQKYERIIAANSDA 401



 Score = 70.8 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 65/188 (34%), Gaps = 8/188 (4%)

Query: 401 HTIQW-NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459
           + I W +         +    A +    +P     P     +   ++++ +   L SI E
Sbjct: 85  YPIYWISGLTKALTAIVSIITAFKLISIIPLALALPSPTQLKQLNQELKEKTQFLQSIYE 144

Query: 460 ATSDGIAIIN--REG--IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
                I +++    G    +S N A  +  G+   +I  K    F+     + +N     
Sbjct: 145 GVEQAIFVLDVVENGIFRYVSYNPAAERFSGFSTSEIQGKTANEFMPTAVANQVNQKFLT 204

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSH 573
            L      T E+       EE+     +   + P  +      T  +I++ KQ + +L  
Sbjct: 205 CLDAQESITFEEHLFFK-GEERWFLTTLTPLQDPQGNIKQIIGTATNINDRKQAEQRLQE 263

Query: 574 AKKIAEKE 581
           +++   + 
Sbjct: 264 SEERFRRA 271


>gi|189426004|ref|YP_001953181.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189422263|gb|ACD96661.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 1127

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 106/590 (17%), Positives = 207/590 (35%), Gaps = 57/590 (9%)

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS--HRNHPSLSAYFDEG 318
           L  +    L + +D            +  G             +          +   + 
Sbjct: 181 LYRTLARPLTQLKDAVAAVTRGDLSYRISGQPPGELGLLASSFNKMIEARQRAESSVKDS 240

Query: 319 ENLTPETVDKCP-IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
           E    +  D  P +   +  +G + Y N   L +T Y+  + +         +  P+   
Sbjct: 241 EARLKDVFDNLPMLTVCLEPNGAISYCNDYLLQITGYRRHE-LIGKNWFDLFIAEPEPLK 299

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
               + V                ++I         + +      +          I  + 
Sbjct: 300 QVFNQMVT------KGEIVHHYQNSILTKSGVVRMVAWSNTLNHDNSGAISGVTSIGSDI 353

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
                 ++ +E     L S+++   + + +++R   +L  N   ++     +  +     
Sbjct: 354 TAQHAAEQALEQSQRILRSLVDGNPESLYLVDRNATVLIANSTFARRLNKGLSQVTGSSL 413

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT 557
                 +        + E+ S                E  L  +             S+ 
Sbjct: 414 DELFNPDVAQRRRARIEEVFSSGRPLIFNDAQDLWQFEHHLNPVS---TLDGGVESVSIL 470

Query: 558 MHDISEWKQEKNKLSHAKKIAEK--------------------------------ESSHK 585
             D+++  + +  L  A ++ ++                                 S  K
Sbjct: 471 TIDVTDRLRNEENLQQANQLLKQNNEALEQRVAERTSELTRLNEELARARDTAEGASRSK 530

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
           S+FLA +SHEIRTP+ AI+G   +            +  EY + +  S   +L I+ND+L
Sbjct: 531 SEFLANMSHEIRTPMNAILGLVHLALQTDLSH----KQREYLDTVSNSAQSLLGIINDIL 586

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSV 704
           D+SKIE+G++ +     SL+  V+  ++L+ + A EK I +      +IP  ++ D   +
Sbjct: 587 DVSKIEAGRLQIEKTNFSLEGVVTRTLALLSIKAREKGINLEQQVDTSIPDALVGDPLRL 646

Query: 705 KQIALNILSNAIHFTPSGG---QIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAM 757
           +Q+ +N+L NA+ FT SG    QI   T    ++     + + + DTG GM    L +  
Sbjct: 647 EQVLVNLLGNAVKFTDSGTVTLQIRRGTEPRDSDSDEITLEISITDTGAGMDEQTLGRLF 706

Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           KPF Q   S      GTGLGL + + +V+   G   + S+P +G+     
Sbjct: 707 KPFSQGDTSTTRTHGGTGLGLTICRHLVEMMGGTITVTSSPGQGSCFTFS 756



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/308 (10%), Positives = 80/308 (25%), Gaps = 12/308 (3%)

Query: 46  HDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKT 105
             SF +     Q  ES    +    ++ F        +  T  ++ +G +   ++ L + 
Sbjct: 220 ASSFNKMIEARQRAESSVKDSEARLKDVF----DNLPM-LTVCLEPNGAISYCNDYLLQI 274

Query: 106 IGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAA 165
            G    ++IG    D+  I   +P   + + +  +           +  + +   +  + 
Sbjct: 275 TGYRRHELIGKNWFDL-FIAEPEPLKQVFNQMVTKGEIVHHYQNSILTKSGVVRMVAWSN 333

Query: 166 LPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF 225
              +  +   SG    G        +      ++  +    L +       +      + 
Sbjct: 334 TLNHDNSGAISGVTSIGS--DITAQHAAEQALEQSQRILRSLVDGNPESLYLVDRNATVL 391

Query: 226 SQQSPPPHLRMK--NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ-EDFHTINLNQ 282
              S       K  ++V+  +       DV +  +  +     S  P    D   +   +
Sbjct: 392 IANSTFARRLNKGLSQVTGSSLDELFNPDVAQRRRARIEEVFSSGRPLIFNDAQDLWQFE 451

Query: 283 YTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLF 342
           +               S   +   +         +   L  +  +             L 
Sbjct: 452 HHLNPVSTLDGGVESVSILTIDVTDRLRNEENLQQANQLLKQNNEALEQRVA-ERTSELT 510

Query: 343 YANPSFLL 350
             N     
Sbjct: 511 RLNEELAR 518


>gi|49475278|ref|YP_033319.1| two-component sensor histidine kinase [Bartonella henselae str.
           Houston-1]
 gi|49238084|emb|CAF27291.1| Two-component sensor histidine kinase [Bartonella henselae str.
           Houston-1]
          Length = 773

 Score =  355 bits (910), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 125/507 (24%), Positives = 225/507 (44%), Gaps = 53/507 (10%)

Query: 342 FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401
            Y + +   +  Y   D +     ++ +++    +  +  + +M  +     I       
Sbjct: 285 VYWSRAMYEMLGYIPQDALLSISQITAIINPNDANFFDLAQELMSGKKKHIDINV----- 339

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
            ++    + + M            E +   GI  +  + R    +     +++   +E  
Sbjct: 340 PMRHADGHYVWMRIRAEVTD---EEELHLVGIAFDISEQRQLAEETAQADLRIRDAIENI 396

Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
           S+   + + EG ++ +N    +    P + +        +E      +N Y  +      
Sbjct: 397 SESFVLWDSEGRLVMSNSKFCEYAAIPKQVLQPGIQRATVEAMARPAINEYPLKDDGTG- 455

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK----------- 570
                  ++  T +   L +    ++            DISE KQ++ K           
Sbjct: 456 ----NLTSIRQTADGCWLKIN---ERRTQDGGLVCIGTDISELKQQQEKFEDSERRLFSF 508

Query: 571 ------------------------LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
                                   L   K+ AE  +  KS+FLA +SHE+RTPL AI+GF
Sbjct: 509 IQELKRARGNAQQRATEVEKLNKSLKAEKERAESANKAKSEFLANMSHELRTPLNAILGF 568

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
           S+++    FGPLG+ RY EY + I  SGN +L ++ND+LD+SKIE+G+  L  + + L+ 
Sbjct: 569 SDIMLQSTFGPLGSQRYQEYMHDIYNSGNHLLTLINDILDMSKIEAGRFTLDRKNIDLEP 628

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726
            +SEA+  +   A EK I + T+ A  +     D R++KQI LN++SNA+ FTPSGG I 
Sbjct: 629 IISEAVRTLTPQAQEKNISVSTNIAPEL-HAEVDGRAMKQIFLNLISNAVKFTPSGGSIN 687

Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
           +         ++ R++DTGVG+    ++K  +PF Q+ N       G+GLGL +++++++
Sbjct: 688 V-CAFKKKNNLVCRIKDTGVGIPQSAIKKLGQPFEQVENQLTKTHTGSGLGLAISRSLLE 746

Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLYDT 813
            + GK  I S   KGT + I  P+  +
Sbjct: 747 LHKGKLEIISKEMKGTTVTITMPIKQS 773


>gi|332702880|ref|ZP_08422968.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332553029|gb|EGJ50073.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 558

 Score =  355 bits (910), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 99/385 (25%), Positives = 177/385 (45%), Gaps = 15/385 (3%)

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
             ++   ++ +   +L+A SD I +++     I+  N+A  +L G    + +R      L
Sbjct: 31  ELQRRLSDLERFRVLLDAVSDAILLVDIASNRIIDLNKAACRLIGRCKPEAVRISLRDAL 90

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCYSLTMH 559
              T      +L+      L             +  ++ L I +              + 
Sbjct: 91  PGETADAWGEHLSAGGEAGLPTEERFQMSMRASDGHIVPLEINLSLHYFESKRYAVAVVR 150

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           DI++ K+ +++L  AK+ AE  S  KS+FLA +SHEIRTP+  IIG  E+          
Sbjct: 151 DITDRKKAEDELKQAKEAAESASRTKSEFLANISHEIRTPMNGIIGMVEL----ALLTAS 206

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
           + +  EY  +I +SG  +L+I+ND+LD SKIE+G++ L          V   +  +   A
Sbjct: 207 DVQTREYLGFIKQSGLALLNIINDILDFSKIEAGRLQLDLREFDPRHMVETTLRPLSYMA 266

Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE--- 735
            EK + +R S   ++P  +  D   ++Q+  N++ NAI FT  G  ++            
Sbjct: 267 KEKDLPLRWSIDPDVPERLAGDQGRIRQVLTNVVGNAIKFTERGSVVVRVDRTEPEGLAG 326

Query: 736 ----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
               +++  VRDTG+G+   + EK  + F Q+  S  ++  G GLGL +++ +V+   G+
Sbjct: 327 GESVQLLFSVRDTGIGIPADKQEKIFESFSQVGTSAHMKYGGAGLGLSISRQLVEMMGGR 386

Query: 792 FYIFSTPAKGTLIEIIFPLYDTSHP 816
            ++ S P KG+       L   + P
Sbjct: 387 IWVESDPGKGSTFHFTVRLSRAAGP 411



 Score = 41.6 bits (96), Expect = 0.55,   Method: Composition-based stats.
 Identities = 42/401 (10%), Positives = 106/401 (26%), Gaps = 48/401 (11%)

Query: 94  YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIE 153
            + ++++   + IG    + + + L D       D                 +     + 
Sbjct: 62  RIIDLNKAACRLIGRCKPEAVRISLRDALPGETADAWGEHLSAGGEAGLPTEERFQMSMR 121

Query: 154 GTNLY-VPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212
            ++ + VP+++     Y  ++ ++      +V             K+  +        K 
Sbjct: 122 ASDGHIVPLEINLSLHYFESKRYA----VAVVRDITDRKKAEDELKQAKEAAESASRTKS 177

Query: 213 GHSSVEKEKYDIFSQ--------------------------QSPPPHLRMKNKVSSLTEY 246
              +    +                                QS    L + N +   ++ 
Sbjct: 178 EFLANISHEIRTPMNGIIGMVELALLTASDVQTREYLGFIKQSGLALLNIINDILDFSKI 237

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYT--KKQYFGTLQNNSKESFEYLS 304
            A +  +   E  P    E +  P        +L             L  +     + L+
Sbjct: 238 EAGRLQLDLREFDPRHMVETTLRPLSYMAKEKDLPLRWSIDPDVPERLAGDQGRIRQVLT 297

Query: 305 H--------RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPS---FLLLTK 353
           +            S+    D  E       +   + F V   G    A+     F   ++
Sbjct: 298 NVVGNAIKFTERGSVVVRVDRTEPEGLAGGESVQLLFSVRDTGIGIPADKQEKIFESFSQ 357

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR-SDRTCIAASARLHTIQWNRENSLA 412
             +   ++  G    L  + +L +    +  +       +    + RL          + 
Sbjct: 358 VGTSAHMKYGGAGLGLSISRQLVEMMGGRIWVESDPGKGSTFHFTVRLSR---AAGPVVG 414

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
                 EKA +  E +    +E   ++  + +  +E    +
Sbjct: 415 KRVQALEKAPEASEPLSILLVEDNLINQLLAQSLLEQRGHE 455


>gi|262404023|ref|ZP_06080578.1| hypothetical protein VOA_002011 [Vibrio sp. RC586]
 gi|262349055|gb|EEY98193.1| hypothetical protein VOA_002011 [Vibrio sp. RC586]
          Length = 1323

 Score =  355 bits (910), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 103/506 (20%), Positives = 196/506 (38%), Gaps = 33/506 (6%)

Query: 325 TVDKCPI---PFFVYSHG---NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
            + + P+     ++Y  G    +     + L L +Y            S L      +  
Sbjct: 334 LLHQFPVELIGLYIYRDGILTRVAGVGQAELALREYSDP----TTTHFSVLRSGKPYAMK 389

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF---------PENMP 429
                  +  +  T          +  N +    +        +            +   
Sbjct: 390 ALGGNYQVVSASGTIALNEVYYLPLHVNSQPIALLELGTVGMISIQQYHWLSQMLDDLSV 449

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
              +       R+ +RK+  +      IL+AT + +  ++  G  L+ N    ++ G   
Sbjct: 450 AIQLTQNAELQRLAERKVLEQSQLNQEILDATPNPMYCLSANGTFLTVNAQFLEMVGLES 509

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
            +++ K                     L    + +       +  +     + +      
Sbjct: 510 NEVIGKQPQEIFPDCVADCFAQA--HTLLTQQQSSQNYEISMTDHKGIQHEMLVYEASFG 567

Query: 550 FS----SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
                 +     + D++E K  + +L  AK  A+  S  K DFLA +SHEIRTP+ AI+G
Sbjct: 568 DRADKVNGIVGLLLDLTERKVMEQELREAKDAADAMSQAKGDFLANMSHEIRTPMNAILG 627

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
            + +  N +          +Y   I+ S   +L I+N++LD SKIE+GK+N+     +LD
Sbjct: 628 MAHLALNTKLDTT----QRKYVTRINESAKNLLGIINEILDFSKIEAGKLNVERIDFNLD 683

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG- 723
           + +    +++ L A EK I        +IP  ++ D   + Q+ +N+  NA+ FT  G  
Sbjct: 684 DVLDNVTAVISLKAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVIVNLCGNAVKFTHQGEI 743

Query: 724 QIIISTTHTSNEEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
            I    +  +++ V     V+DTG+G+   +L      F Q  +S   +  GTGLGL ++
Sbjct: 744 VITARVSQLNDQYVTLGFAVKDTGIGIAKEKLTDLFNAFSQADSSITRQYGGTGLGLSIS 803

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEII 807
           K +V+   G+  + ST  +G++ E  
Sbjct: 804 KQLVELMGGQISVRSTEGEGSIFEFS 829



 Score = 45.0 bits (105), Expect = 0.050,   Method: Composition-based stats.
 Identities = 13/143 (9%), Positives = 42/143 (29%), Gaps = 3/143 (2%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + + A+G    ++ +  + +G  + ++IG +  ++      D       LL +Q +   
Sbjct: 485 MYCLSANGTFLTVNAQFLEMVGLESNEVIGKQPQEIFPDCVADCFAQAHTLLTQQQSSQN 544

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
                  +   +   + +       R  + +G    G++             +       
Sbjct: 545 YEISM-TDHKGIQHEMLVYEASFGDRADKVNGI--VGLLLDLTERKVMEQELREAKDAAD 601

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQ 228
            + + K    +    +       
Sbjct: 602 AMSQAKGDFLANMSHEIRTPMNA 624


>gi|115372967|ref|ZP_01460271.1| two-component hybrid sensor and regulator [Stigmatella aurantiaca
           DW4/3-1]
 gi|310818670|ref|YP_003951028.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|115370045|gb|EAU68976.1| two-component hybrid sensor and regulator [Stigmatella aurantiaca
           DW4/3-1]
 gi|309391742|gb|ADO69201.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 956

 Score =  355 bits (910), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 102/594 (17%), Positives = 212/594 (35%), Gaps = 31/594 (5%)

Query: 236 MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN 295
           + +    L   +  +   +    + ++        EQ  F   + +          ++N 
Sbjct: 219 LTSAAWWLDHIHPEERQRISESIHGIIDGGHPFWLEQYRFRRGDGSYAVIYDRGYLVRNG 278

Query: 296 SKESFEYLSH----RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYA-NPSFLL 350
              +   +          +      + E+     +D        +    L  A N + L 
Sbjct: 279 EGRALRMVGAMQDVTARQAAEEALRQSESRYRRLIDAGIFGMLEWKADGLVTAINDALLG 338

Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
           L        ++       LL           + +   +         A    ++ +    
Sbjct: 339 LLGLTREAALKPGFTFWRLLSPENP------EAMKGLKETGVLPPFEA--QYLRPDGGQV 390

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR---KMEIEVMQLCSILEATSDGIAI 467
             +         +                    +R   K++    +  ++ +     + +
Sbjct: 391 DLLISGFTLDEGRERGLALVLDTTRLKAVQAERERLMVKLQESETRFRNMADHAPVMLWV 450

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
            +        ++      G   E  L   +   +  +     +       +  +   ++ 
Sbjct: 451 TDASAYCSYLSKGWYDFTGQTEETGLGFGWLSVVHPDDAKRSSDAFLAANAKRVPFRIDY 510

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSH-------AKKIA 578
                    + L      +  P      Y  ++ DI+E KQ +++          A++ A
Sbjct: 511 RLRRRDGAYRWLIDSGSPRFGPDGEFLGYIGSLLDITERKQAEDEREGLLARESAARQEA 570

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
           ++ +  K +FLA VSHE+RTPLTA++G+ +++   R G L   ++      ++R+     
Sbjct: 571 QEANRLKDEFLATVSHELRTPLTAMLGWVQML---RTGNLPAGKHARALETVERNARAQS 627

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
            ++ DLLD+S+I SGK+ L  EPV +   V  A+  V+  A+ K I ++ +  +    ++
Sbjct: 628 QLIEDLLDVSRIMSGKLRLDVEPVEVSVVVEHALESVRPAADAKHIRLQAAVDSTS-HVM 686

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
            D + ++Q+  N+LSNA+ FTP GG++ +      +  V + V DTG G+    L     
Sbjct: 687 GDAQRLQQVVWNLLSNAVKFTPKGGRVQVFVERRDS-SVDITVADTGHGIAAKFLPHVFD 745

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFPLY 811
            F Q   S      G GLGL + + +V+ + G    FS    KG    +  P+ 
Sbjct: 746 RFRQADGSTTRSAGGLGLGLSIVRQLVELHGGTVSAFSEGEGKGATFTVTLPMS 799



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/410 (10%), Positives = 98/410 (23%), Gaps = 28/410 (6%)

Query: 69  DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI- 127
           +SE  F        V   W  DA  Y   +S+      G      +G     V       
Sbjct: 432 ESETRFRNMADHAPV-MLWVTDASAYCSYLSKGWYDFTGQTEETGLGFGWLSVVHPDDAK 490

Query: 128 DPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187
             ++       ++  +     L   +G   Y  +  +  P +  + EF G+   G +   
Sbjct: 491 RSSDAFLAANAKRVPFRIDYRLRRRDG--AYRWLIDSGSPRFGPDGEFLGY--IGSLLDI 546

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM----------- 236
                     + L  + S   +  +  + ++ E     S +   P   M           
Sbjct: 547 TERKQAEDEREGLLARESAARQEAQEANRLKDEFLATVSHELRTPLTAMLGWVQMLRTGN 606

Query: 237 -KNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN 295
                 +       ++   +++    L      +  +       +      ++       
Sbjct: 607 LPAGKHARALETVERNARAQSQLIEDLLDVSRIMSGKLRLDVEPVEVSVVVEHALESVRP 666

Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKY 354
           + ++          S S    + + L     +       F    G +             
Sbjct: 667 AADAKHIRLQAAVDSTSHVMGDAQRLQQVVWNLLSNAVKFTPKGGRVQVFVERRDSSVDI 726

Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
              D      G++                     +    +  S     ++ +     A +
Sbjct: 727 TVAD---TGHGIAAKFLPHVFDRFRQADGSTTRSAGGLGLGLSIVRQLVELHGGTVSAFS 783

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI------EVMQLCSIL 458
               + A           +  E    R     +        E+ +L  ++
Sbjct: 784 EGEGKGATFTVTLPMSVALRREVTVPRSLTPAVSRGLPCPPELARLRVLI 833



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/371 (7%), Positives = 83/371 (22%), Gaps = 57/371 (15%)

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
            P ++    +   + +  +    L +    S      +    +            E +D 
Sbjct: 4   QPPEDTRQEVPPPRKSGSRATKLLPDLLDASQPEFIQQWVRQVRTLEGAQALSNEELIDS 63

Query: 329 CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388
            P                    +T     +  + +G             N A        
Sbjct: 64  LP---------------RFLEEMTGALRQEAGQPSGS------PLPGHSNVAAAHGRQRV 102

Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK-- 446
                 A   R + +  +                Q             +   + +     
Sbjct: 103 RLGFDAALVVREYALLRDSLFGWIQQNGLSPAMEQVHLLSRCIDTGTREALAQFSSATQS 162

Query: 447 -----MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK------ 495
                  +   +   ++ AT+D +   +     +  N A+  + G+ ++ +  +      
Sbjct: 163 SGVDGALLTEARYRLVMTATNDVVWDWDLISNEVLWNEALRSVLGHELQVLGERMYLTSA 222

Query: 496 -PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC- 553
             +   +       ++  +  I+       LE+       +     +      +      
Sbjct: 223 AWWLDHIHPEERQRISESIHGIIDGGHPFWLEQ-YRFRRGDGSYAVIYDRGYLVRNGEGR 281

Query: 554 ---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
                  M D++  +  +  L  ++    +                      I G  E  
Sbjct: 282 ALRMVGAMQDVTARQAAEEALRQSESRYRRLIDA-----------------GIFGMLEWK 324

Query: 611 KNQRFGPLGNP 621
            +     + + 
Sbjct: 325 ADGLVTAINDA 335



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/251 (9%), Positives = 59/251 (23%), Gaps = 25/251 (9%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMI--GMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144
           W   A G +  I++ L   +G      +  G     +    + +    +    +      
Sbjct: 323 WK--ADGLVTAINDALLGLLGLTREAALKPGFTFWRLLSPENPEAMKGLK---ETGVLPP 377

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL---- 200
            +      +G    V + ++   +    RE    RG  +V         +A  +RL    
Sbjct: 378 FEAQYLRPDGGQ--VDLLISGFTL-DEGRE----RGLALVLDTTRLKAVQAERERLMVKL 430

Query: 201 ---DKKFSHLHEIKKGHSSVEKEKYDIFSQQSP--PPHLRMKNKVSSLTEYYAHKDDVLK 255
              + +F ++ +       V                   + +              D  K
Sbjct: 431 QESETRFRNMADHAPVMLWVTDASAYCSYLSKGWYDFTGQTEETGLGFGWLSVVHPDDAK 490

Query: 256 TEKYPLLTSEESSLPEQ--EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
                 L +    +P +        +                  E   Y+      +   
Sbjct: 491 RSSDAFLAANAKRVPFRIDYRLRRRDGAYRWLIDSGSPRFGPDGEFLGYIGSLLDITERK 550

Query: 314 YFDEGENLTPE 324
             ++       
Sbjct: 551 QAEDEREGLLA 561


>gi|91216331|ref|ZP_01253298.1| sensory box histidine kinase/response regulator [Psychroflexus
           torquis ATCC 700755]
 gi|91185469|gb|EAS71845.1| sensory box histidine kinase/response regulator [Psychroflexus
           torquis ATCC 700755]
          Length = 1325

 Score =  354 bits (909), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 128/643 (19%), Positives = 243/643 (37%), Gaps = 24/643 (3%)

Query: 182 GIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP------PHLR 235
            ++       +     K ++  FS    + +        K +                  
Sbjct: 276 CVIREVTDRKNAEKELKLINNLFSEAESLSQIGGWHYDVKKEKLFWTPILKEIAEIESHE 335

Query: 236 MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT---L 292
             +   +L+ + + +     TEK         S   + +  T                  
Sbjct: 336 QPDLEGALSFFKSGESAKRMTEKVQDCIHNHISYTGEFETQTAKGRSIWALVNIKPEIVD 395

Query: 293 QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLL 350
           +        +    +  +      +  +     +D   +  + ++   G   + N  F+ 
Sbjct: 396 KECVGLYGTFQDITDIKNTKIKLKKERSRLNNIIDATNLGTWEWNVQTGEALF-NNRFVE 454

Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
           +  Y + + + ++  +    +A    D       +    D         L          
Sbjct: 455 MLGYTTKE-MTLSNSIDVWNNATHPIDLPESDKALQEHFDGKSDFYKMDLRLKHKLGHWI 513

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN- 469
             +         +  +     G   +  D ++ ++ ++  V Q  +I E +  GI I + 
Sbjct: 514 WVLDKGKVISWTEDGQPEWMFGTHHDITDKKVLEKDLKKNVQQFKNIFELSPVGIIITDF 573

Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ-NTPSVMNHYLTEILSLDLRQTLEKI 528
           + G  L  N+A+  + GY  ++IL         +          +  +  L     LEK+
Sbjct: 574 KSGNFLDVNKAMQDMVGYTKDEILDMNIWSITPEKEVVEKDRQAIQNLKDLKKIGPLEKV 633

Query: 529 TLGSTKEEKLLSLRIIIKKLPFSSCYSL-TMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
               T E   + +  +I      +   + T+ DI+E K+ + KL  +K  A K S  KS+
Sbjct: 634 LKAKTGEFIKVMINGLIHFNEDGNRIVISTIQDITEQKRFEKKLEKSKVEAIKASQAKSE 693

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           F+A +SHEIRTPL  +IGFS+++         N    +Y   + +S N +LD++ND+L+ 
Sbjct: 694 FVANMSHEIRTPLNGVIGFSDLLMKTPL----NEVQHKYMKTVFQSANTLLDLINDVLNF 749

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQ 706
           SKIESGK+ L  E  SL + V+E + L +  A++K +       + IP  I  D   +KQ
Sbjct: 750 SKIESGKLQLDIEKTSLIKLVNEVVDLTKYDAHKKGLEFVLVIEDKIPDYIWIDGVRLKQ 809

Query: 707 IALNILSNAIHFTPSG-GQIIISTTHTSNE--EVILRVRDTGVGMTNYELEKAMKPFGQI 763
           I +N++SNAI FT  G  ++ +   + +N    +   V D G+G+     +K    F Q 
Sbjct: 810 ILMNLISNAIKFTHRGYVKLKVHFKNKTNNLTTISFSVEDKGIGIAKGNQKKIFNAFIQE 869

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
             S   +  GTGLGL ++  ++     K  + S    G+    
Sbjct: 870 DASVTKKYGGTGLGLSISGKILGLMNSKLKLKSQLGIGSEFYF 912



 Score = 46.2 bits (108), Expect = 0.023,   Method: Composition-based stats.
 Identities = 17/135 (12%), Positives = 47/135 (34%), Gaps = 2/135 (1%)

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
             +  ++L  T D + ++N E   L        L       I ++   + L+    S + 
Sbjct: 171 KHRFQTLLNNTGDMVFLLNAELKFLEFYGKEDNLLLKKQTFINKRIDEIDLDHQLVSKLK 230

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK-KLPFSSCYSLTMHDISEWKQEKN 569
             +      +    +E   L   K +K  ++ + +  +    +     + ++++ K  + 
Sbjct: 231 LAVESSKQNNSSIPIEYNLLA-NKSQKWFNMNVTVVQRKNSETEVLCVIREVTDRKNAEK 289

Query: 570 KLSHAKKIAEKESSH 584
           +L     +  +  S 
Sbjct: 290 ELKLINNLFSEAESL 304



 Score = 39.2 bits (90), Expect = 2.5,   Method: Composition-based stats.
 Identities = 7/133 (5%), Positives = 36/133 (27%), Gaps = 3/133 (2%)

Query: 93  GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPI 152
           G   ++++ +   +G    +++ M +  ++    +   +       +     G       
Sbjct: 576 GNFLDVNKAMQDMVGYTKDEILDMNIWSITPEKEVVEKDRQAIQNLKDLKKIGPLEKVLK 635

Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212
             T  ++ + +  L  ++ +           +             ++   +     + K 
Sbjct: 636 AKTGEFIKVMINGLIHFNEDGN---RIVISTIQDITEQKRFEKKLEKSKVEAIKASQAKS 692

Query: 213 GHSSVEKEKYDIF 225
              +    +    
Sbjct: 693 EFVANMSHEIRTP 705


>gi|163867966|ref|YP_001609170.1| two-component sensor histidine kinase [Bartonella tribocorum CIP
           105476]
 gi|161017617|emb|CAK01175.1| two-component sensor histidine kinase [Bartonella tribocorum CIP
           105476]
          Length = 773

 Score =  354 bits (909), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 123/507 (24%), Positives = 222/507 (43%), Gaps = 53/507 (10%)

Query: 342 FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401
            Y + +   +  Y   D +     +S +++    +  +  + +M  +     I       
Sbjct: 285 VYWSRAMYEMLGYVPQDALLSISQISAIINPNDANFFDLAQELMGGKKKHIDINV----- 339

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
            ++    + + M         + P      GI  +  + +    +     +++   +E  
Sbjct: 340 PMRHADGHYVWMRLRAEVTEEEEP---HLVGISFDISEQQQLAEQTAQADLRIRDAIENI 396

Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
           S+   + + EG ++ +N    +    P + +        +E      ++ Y  +      
Sbjct: 397 SESFVLWDAEGRLVMSNSKFCEYAAIPKQILQSGIQRATVEAMARPALSEYPLKDDGTG- 455

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK----------- 570
                  ++  T +   L +    ++            DISE KQ++ K           
Sbjct: 456 ----NLTSIRQTADGYWLKIN---ERRTQDGGLVCIGTDISELKQQQEKFEDSERRLFSF 508

Query: 571 ------------------------LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
                                   L   K+ AE  +  KS+FLA +SHE+RTPL AI+GF
Sbjct: 509 IQELKRTRGSAQQRATEVEKLNKSLKAEKERAESANKAKSEFLANMSHELRTPLNAILGF 568

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
           S+++    FGPLG+ RY EY + I  SG  +L ++ND+LD+SKIE+G+  L  +   L+ 
Sbjct: 569 SDIMLQSTFGPLGSQRYKEYMHDIYNSGTHLLTLINDILDMSKIEAGRFTLDCKNTDLEP 628

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726
            +SEA+  +   A EK I + T+    +     D R++KQI LN++SNA+ FTPSGG I 
Sbjct: 629 IISEAVRTLTPQAQEKNIAVTTNITPKL-HAEVDGRAMKQIFLNLISNAVKFTPSGGNID 687

Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
           +         +I ++ DTGVG+    ++K  +PF Q+ N       G+GLGL +++++++
Sbjct: 688 V-CAFKKKNNLIFKITDTGVGIPQSAIKKLGQPFEQVENQLTKSHTGSGLGLAISRSLLE 746

Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLYDT 813
            + GK  I S   KGT + II P+  +
Sbjct: 747 LHKGKLEITSKEMKGTTVTIIMPITQS 773


>gi|323699593|ref|ZP_08111505.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. ND132]
 gi|323459525|gb|EGB15390.1| multi-sensor hybrid histidine kinase [Desulfovibrio desulfuricans
           ND132]
          Length = 1165

 Score =  354 bits (909), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 108/531 (20%), Positives = 198/531 (37%), Gaps = 32/531 (6%)

Query: 290 GTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSF 348
              +   + +   L  R     S    E E +     D       ++   G +   N   
Sbjct: 377 RRAEKELRTAHRTLEERVKERTSK-LRESEEVLRTVFDFAYDAIIIHDGQGRILEVNQRM 435

Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
           + +   + +D   ++      L +P    +     +     D        R+   + +RE
Sbjct: 436 IEMFGLEGMDPSGVSLAQD--LSSPDNPLHAMAGIMREVL-DGRPHHLEWRVRRYRDSRE 492

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468
             + +         +            +    + ++  +   +++  +ILE +  GIA+ 
Sbjct: 493 FDVEVHLTRITYRGEEA----ILANVRDISVRKESENSIRQNLVKFEAILENSLMGIAMT 548

Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528
                I++ NR  +++FGY  E++      + L           L    +L  R      
Sbjct: 549 -VGRRIVTINRRGAEIFGYSPEEMQDNTLNLLLGHYQTQDEF-VLAAKAALAERGEFNTE 606

Query: 529 TLGSTKEEKLLSLRI---IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
               +K    +  R+    +     +        D++E ++ +  L   ++ AE  +  K
Sbjct: 607 QAFRSKNGSTVWCRMYAKTVDPGDLTRGVIWAWDDVTENRKAQEDLLRTREDAEAANRAK 666

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
           S+FLA +SHEIRTP+ AI+G +E+               +Y   +  S   +L I+ND+L
Sbjct: 667 SEFLAAMSHEIRTPMNAIVGMTEITLQTDL----TDDQRDYLKTVKDSAQHLLSIINDIL 722

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSV 704
           D+SKIE+ K+ L      L   V   I  +++ A +K + +        P  +  D  S+
Sbjct: 723 DLSKIEARKLELDHVDFDLPFHVRTTIKGLEVQARQKGLDMVLEIDEAAPNCVKGDPLSL 782

Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNE--------EVILRVRDTGVGMTNYELEKA 756
           +Q+ +N+  NAI FT  G  I I                 V   V DTG+G+    L+  
Sbjct: 783 RQVLVNLAGNAIKFTHRG-TIAIRVGPGQGPAPDEARTVGVAFAVEDTGIGIPREFLDSI 841

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
            + F Q          GTGLGL + K ++    G   + ST  KG+     
Sbjct: 842 FQSFSQT----TRAFGGTGLGLAICKQLISLMGGDIVVESTVGKGSTFSFT 888



 Score = 45.0 bits (105), Expect = 0.058,   Method: Composition-based stats.
 Identities = 33/255 (12%), Positives = 77/255 (30%), Gaps = 24/255 (9%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLC-DVSDILHI--DPNNHIGDLLKRQNTWYGK 146
           D  G + E+++ + +  G       G+ L  D+S   +        + ++L  +      
Sbjct: 423 DGQGRILEVNQRMIEMFGLEGMDPSGVSLAQDLSSPDNPLHAMAGIMREVLDGRPHHLEW 482

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                 +     V + L  +                 V    V  +     ++   KF  
Sbjct: 483 RVRRYRDSREFDVEVHLTRITYRGEEAIL------ANVRDISVRKESENSIRQNLVKFEA 536

Query: 207 LHEIK---------KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257
           + E           +   ++ +   +IF      P     N ++ L  +Y  +D+ +   
Sbjct: 537 ILENSLMGIAMTVGRRIVTINRRGAEIFGYS---PEEMQDNTLNLLLGHYQTQDEFVLAA 593

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
           K  L    E     ++ F + N +    + Y  T+ +    +   +   +  + +    E
Sbjct: 594 KAALAERGE--FNTEQAFRSKNGSTVWCRMYAKTV-DPGDLTRGVIWAWDDVTENRKAQE 650

Query: 318 GENLTPETVDKCPIP 332
               T E  +     
Sbjct: 651 DLLRTREDAEAANRA 665


>gi|117926642|ref|YP_867259.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117610398|gb|ABK45853.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1059

 Score =  354 bits (909), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 116/533 (21%), Positives = 205/533 (38%), Gaps = 39/533 (7%)

Query: 315 FDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
                N     +   P    +    G     NP+F           +        L    
Sbjct: 254 LQTQRNRFETLLAANPDLISLKNRVGIYQVVNPAFCHFLGLPKEAILGQDDA--RLFTPH 311

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASAR--------LHTIQWN-----RENSLAMTFIPFEK 420
           + +        +L     +     A         LH I+        E S  +T +    
Sbjct: 312 QAARIRQADQWVLSSGAPSAQEEEAVGPDNLPLWLHVIRTPITQATGEVSGILTTVRNIS 371

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI-ILSTNR 479
           A +  E   +   E  + +     + +     +L  + E     + + +     +   + 
Sbjct: 372 ARRMAEEALRTAHEGLEQEVAQRTQALRESETRLRIVTENLPAVVWMSDPLLTSMHFVSP 431

Query: 480 AVSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
           A  +++G   E +L+  +     +  +  S +   +         Q  E        +  
Sbjct: 432 AYEQIWGKSRESLLQDPQSLWTSIHPSDRSFVLKRILNSNG----QPWEAEYRILHPDGT 487

Query: 538 LLSLRIIIKKLPFSSCYSLTMH----DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
              +R        +    L +     D++  K+ +  LS AK+ AE  +  KS FLA +S
Sbjct: 488 TRWIREQGAAFRDTHKQILFLIGCAFDVTPLKETERALSTAKQEAESANHAKSAFLATMS 547

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HEIRTPL  I G  E+++             +    I +   +++DI+ND+LD+SKIE+G
Sbjct: 548 HEIRTPLNGITGMIELLQRSALSV----EQRQQVETISKCSVVLMDILNDILDLSKIEAG 603

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNIL 712
           ++ L   P S  + +   + ++Q  A  K + ++ +    +P  +L D   ++Q+ALN++
Sbjct: 604 QLVLERAPFSPTQLLLNLLEVMQPQARNKELDLQLNMDEKLPSTMLGDATRLRQVALNLI 663

Query: 713 SNAIHFTPSGGQIIIST----THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
            NAI FTP G  + IS            V L V+D G+G+ + +L     PF Q  +S  
Sbjct: 664 GNAIKFTPRG-WVKISLLVHERIDDIVWVELAVQDQGIGIADEKLVHLFNPFTQADSSIT 722

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP--LYDTSHPHDC 819
               GTGLGL ++K +V+A  G   + S   KGT   +  P  +  T  P D 
Sbjct: 723 RNYGGTGLGLAISKRLVEAMAGAISVTSIEGKGTHFRVTLPMQVAHTPLPADA 775



 Score = 50.8 bits (120), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 27/320 (8%), Positives = 74/320 (23%), Gaps = 40/320 (12%)

Query: 93  GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD-LLKRQNTWYGKTTLWP 151
           G  + ++      +G     ++G     +               +L        +     
Sbjct: 279 GIYQVVNPAFCHFLGLPKEAILGQDDARLFTPHQAARIRQADQWVLSSGAPSAQEEEAVG 338

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
            +   L + + +   PI     E SG      V             +   +        +
Sbjct: 339 PDN--LPLWLHVIRTPITQATGEVSGI--LTTVRNISARRMAEEALRTAHEGLEQEVAQR 394

Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH-------KDDVLKTEKYPLLTS 264
                  + +  I ++  P         ++S+               + L  +   L TS
Sbjct: 395 TQALRESETRLRIVTENLPAVVWMSDPLLTSMHFVSPAYEQIWGKSRESLLQDPQSLWTS 454

Query: 265 EES----------------SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
                                  +      +      ++     ++  K+    +     
Sbjct: 455 IHPSDRSFVLKRILNSNGQPWEAEYRILHPDGTTRWIREQGAAFRDTHKQILFLIGCAFD 514

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
            +     +   +   +  +               +A  +FL    ++    +    G+  
Sbjct: 515 VTPLKETERALSTAKQEAESAN------------HAKSAFLATMSHEIRTPLNGITGMIE 562

Query: 369 LLDAPKLSDNNAIKPVMLYR 388
           LL    LS     +   + +
Sbjct: 563 LLQRSALSVEQRQQVETISK 582


>gi|330962181|gb|EGH62441.1| two-component sensor/regulator [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 576

 Score =  354 bits (909), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 123/562 (21%), Positives = 215/562 (38%), Gaps = 51/562 (9%)

Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP-----IPFFVYSHGNLFYANPSFLL 350
                     R    + +   +    T    D               HG +   N     
Sbjct: 6   VDRQAAEPQSRAETIVESRRQKILLKTGALQDAIFNSAYFSSIATDEHGVIQIFNVGAER 65

Query: 351 LTKYKSVDDIEIAGGLS-----TLLDAPKLSDNNAIKPVM-----LYRSDRTCIAASARL 400
           +  Y S D ++            L+       +    P+      L       I     L
Sbjct: 66  MLGYHSEDVVDKITPADISDPAELIIRAAALSHELNTPITPGFEALVFKASRGIEDIYEL 125

Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK-------RKMEIEVMQ 453
             I+ +     AM        +     +    I  ++   +  +       +++  +   
Sbjct: 126 TYIRKDGSRLSAM-VSVTSLRDSTETIIGYLLIGTDNTARKQEEETQALLDQRLRDQQFY 184

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
             S++E+  D + + + +GII   N+ +  L G   ++++  P   F     P+  +  +
Sbjct: 185 TRSLIESNIDALMMTDPQGIISDVNKQMMALTGRTRDELIGAPCKNFF--TDPASADAAI 242

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKL 571
             ++S       E         E ++S                     D++E K+ +  L
Sbjct: 243 KRVISEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRKLKGVFAAARDVTERKRFERTL 302

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
                  E  S  KS+FLA +SHE+RTPL AIIGFSE +K+   G + +     Y   I 
Sbjct: 303 EEKNIELEHASHMKSEFLATMSHELRTPLNAIIGFSEALKDGMVGDMSDA-QRGYIGDIF 361

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
            SG  +L ++ND+LD+SK+E+G M L  EPV LDE +S ++ +V+  A  +RI ++    
Sbjct: 362 NSGQHLLSLINDILDLSKVEAGMMTLELEPVDLDELLSNSLLIVREQAALQRIQLKLETD 421

Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE--------------- 736
            +   +  D R  KQI  N+L+NA+ F+  GG + +S     + +               
Sbjct: 422 ADFGLLELDRRKTKQIVYNLLANAVKFSAPGGWVTLSVRQVPSAQAGVLEGDWPTHVFPV 481

Query: 737 --------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                   + L V DTG+G+   ++ K  K F QI +    + EGTGLGL + K + + +
Sbjct: 482 PPGDYEQFLELSVSDTGIGIAQSDMNKLFKAFSQIDSGLARKFEGTGLGLAMVKQLAELH 541

Query: 789 MGKFYIFSTPAKGTLIEIIFPL 810
            G   + S    G    +  P+
Sbjct: 542 GGSVAVASVKDLGARFVVWLPI 563



 Score = 48.1 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/137 (11%), Positives = 42/137 (30%), Gaps = 5/137 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            D  G + ++++++    G    ++IG    +         +  I  ++        + T
Sbjct: 199 TDPQGIISDVNKQMMALTGRTRDELIGAPCKNFFTDP-ASADAAIKRVISEHKVSDYELT 257

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           +   +GT     +   A   + R+R+  G   F                +  + +  H  
Sbjct: 258 VRAYDGTETV--VSYNAATFHDRDRKLKGV--FAAARDVTERKRFERTLEEKNIELEHAS 313

Query: 209 EIKKGHSSVEKEKYDIF 225
            +K    +    +    
Sbjct: 314 HMKSEFLATMSHELRTP 330



 Score = 44.6 bits (104), Expect = 0.071,   Method: Composition-based stats.
 Identities = 24/265 (9%), Positives = 65/265 (24%), Gaps = 26/265 (9%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGM-RLCDVSDILHI------------DPNNHIGD 135
            D HG ++  +    + +G ++  ++      D+SD   +             P     +
Sbjct: 50  TDEHGVIQIFNVGAERMLGYHSEDVVDKITPADISDPAELIIRAAALSHELNTPITPGFE 109

Query: 136 LL----KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN 191
            L     R      + T    +G+   +   ++   +        G+   G  +  R   
Sbjct: 110 ALVFKASRGIEDIYELTYIRKDGS--RLSAMVSVTSLRDSTETIIGYLLIGTDNTARKQE 167

Query: 192 DP-----RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSSLT 244
           +          +        L E       +   +  I            R ++++    
Sbjct: 168 EETQALLDQRLRDQQFYTRSLIESNIDALMMTDPQGIISDVNKQMMALTGRTRDELIGAP 227

Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
                 D          + SE      +      +  +        T  +  ++     +
Sbjct: 228 CKNFFTDPASADAAIKRVISEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRKLKGVFA 287

Query: 305 HRNHPSLSAYFDEGENLTPETVDKC 329
                +    F+         ++  
Sbjct: 288 AARDVTERKRFERTLEEKNIELEHA 312


>gi|117926231|ref|YP_866848.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117609987|gb|ABK45442.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1118

 Score =  354 bits (909), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 121/739 (16%), Positives = 258/739 (34%), Gaps = 44/739 (5%)

Query: 97  EISEELPKTIG---NYAFKMIGMRLCD-VSDILHIDPNNHIGDLLKRQNTWYGKTTLWPI 152
            +S +    +G     A + + +     V               + +++    +     +
Sbjct: 244 YVSPQAVVLLGGQGCQADEPLDVWWNRHVWAEDW--ETLQHARQMLKKHKRPMQVEYRMV 301

Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212
                 + +   A  +          +G  +V                + +F  L+E   
Sbjct: 302 RQDGQLIWVRDVARLVCDEQGLPLLVQG--MVMDVSEARHTHEKLIASEVRFRQLYENAP 359

Query: 213 GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE- 271
                   +  I +        +   ++S + ++   +  V+  E+      E       
Sbjct: 360 IAYQSLNTEGVIQNVNQA-WLKKTGYELSQVLDHSLFEFLVVGQEQEVAKKFEAFLQAGY 418

Query: 272 ----QEDFHTINLNQYTKKQYFGTLQNNSKESF----EYLSHRNHPSLSAYFDEGENLTP 323
                 +    +             ++ S                   +    E E+   
Sbjct: 419 VQDLHYELRCADGRALKVSINGQVSRDRSGRLVKTHCVLTDITEQDRAAQALQESESRLR 478

Query: 324 ETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL--LDAPKLSDNNA 380
             +       F +   GN  +ANP+ L +  Y+    +     L  +    +  +     
Sbjct: 479 LILASTGEGLFGLDLQGNFIFANPACLRMMGYRDDRQLLGKPMLEIVSCCSSQFVRRGKG 538

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
             P+           A   L   +    +  +  F       Q  E +       +    
Sbjct: 539 SCPISQILKTGLPNHAEGELF--RRADGSFFSTEFWSHPI-QQNGELVGAVVTFIDISQR 595

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG-YPVEDILRKPFTV 499
            +N+  ++   ++  +I E+    + I++  G++   N A    FG +    ++      
Sbjct: 596 VLNQTALKASELKYRTIFESVPTPLLILDTSGVVRDVNSAHQSTFGRFAGGSLMGVSIRE 655

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL--------PFS 551
                    +       L+      L++ +     E + +   +                
Sbjct: 656 --HPGVAGSLLAESFLALAKGEPMPLQQASYTMEAEGEAIHFNVRGVPFVTRDGEGREDL 713

Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
               +   +I++ KQ + KL  A + A+  +  K DFLA +SHEIRTP+  ++G +E++ 
Sbjct: 714 QGALVIHENITDLKQTELKLRKAVEEADCATHAKGDFLAVMSHEIRTPMNLVVGMAELLL 773

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
                   N     Y   + ++G+ +L ++N++LD++K++ G++ L  EP +    + E 
Sbjct: 774 ETDV----NAEQKHYLEKLQKAGDTLLSLINNILDLTKLDEGQLKLLDEPFAPQALLDEV 829

Query: 672 ISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
             ++ L A  K + +       +P  +L D   +KQ+ LN+LSNA+ FT  G  I +S T
Sbjct: 830 SGIISLAAEAKGLTLSCEIQEGVPERVLGDSVRIKQVLLNLLSNALKFTQQGF-IRLSLT 888

Query: 731 HTSNE---EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
               E   ++   V D+G+G+ +Y L++  + F Q  +S   R  G+GLGL + K +V  
Sbjct: 889 VEGAEGAQQLCYAVSDSGMGIPDYHLDEVFERFSQGDSSMTRRFGGSGLGLAICKKLVIL 948

Query: 788 NMGKFYIFSTPAKGTLIEI 806
             G+  + S    G + +I
Sbjct: 949 MQGQIQVSSQVDVGAIFQI 967



 Score = 73.5 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/384 (8%), Positives = 92/384 (23%), Gaps = 28/384 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ++  G ++ +++   K  G    +++   L +   +          +   +         
Sbjct: 365 LNTEGVIQNVNQAWLKKTGYELSQVLDHSLFEFLVVGQEQEVAKKFEAFLQAGYVQDLHY 424

Query: 149 LWP-IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                +G  L V I         R+          ++      +      +  + +   +
Sbjct: 425 ELRCADGRALKVSI--NGQVSRDRSGRLVKTH--CVLTDITEQDRAAQALQESESRLRLI 480

Query: 208 HEIKKGHSSVEKEKYDIFSQQSP---PPHLRMKNKVSSLTEYYA-----HKDDVLKTEKY 259
                        + +              R   ++              +         
Sbjct: 481 LASTGEGLFGLDLQGNFIFANPACLRMMGYRDDRQLLGKPMLEIVSCCSSQFVRRGKGSC 540

Query: 260 PLLTSEESSLP---EQEDFHTINLNQYTKKQYFGTLQ---NNSKESFEYLSHRNHPSLSA 313
           P+    ++ LP   E E F   + + ++ + +   +Q           ++          
Sbjct: 541 PISQILKTGLPNHAEGELFRRADGSFFSTEFWSHPIQQNGELVGAVVTFIDISQRVLNQT 600

Query: 314 YFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                E       +  P P  +    G +   N +        +   +            
Sbjct: 601 ALKASELKYRTIFESVPTPLLILDTSGVVRDVNSAHQSTFGRFAGGSLMGVSIREH---- 656

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA-MTFIPFEKANQFP--ENMP 429
                 + +    L  +    +      +T++   E     +  +PF   +     +   
Sbjct: 657 -PGVAGSLLAESFLALAKGEPMPLQQASYTMEAEGEAIHFNVRGVPFVTRDGEGREDLQG 715

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQ 453
              I     D +  + K+   V +
Sbjct: 716 ALVIHENITDLKQTELKLRKAVEE 739



 Score = 43.5 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 17/145 (11%), Positives = 48/145 (33%), Gaps = 10/145 (6%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGII-LSTNRAVSKLF---GYPVEDILRKPFTV 499
             +ME +  +L  ++E     I   +    +    +     L    G   ++ L   +  
Sbjct: 211 AGRMEWQHQRLAMLVEGMPAVIYTEDLRTQLPYYVSPQAVVLLGGQGCQADEPLDVWWNR 270

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH 559
            +       + H    +      + ++       ++ +L+ +R + + +       L + 
Sbjct: 271 HVWAEDWETLQHARQMLKKHK--RPMQVEYRMVRQDGQLIWVRDVARLVCDEQGLPLLVQ 328

Query: 560 ----DISEWKQEKNKLSHAKKIAEK 580
               D+SE +    KL  ++    +
Sbjct: 329 GMVMDVSEARHTHEKLIASEVRFRQ 353



 Score = 41.6 bits (96), Expect = 0.63,   Method: Composition-based stats.
 Identities = 44/362 (12%), Positives = 99/362 (27%), Gaps = 22/362 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFK-MIGMRLCDV----SDILHIDPNNH--IGDLLK 138
            + +D  G     +    + +G    + ++G  + ++    S            I  +LK
Sbjct: 488 LFGLDLQGNFIFANPACLRMMGYRDDRQLLGKPMLEIVSCCSSQFVRRGKGSCPISQILK 547

Query: 139 RQNT-WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG 197
                          +G+  +   +  + PI  +N E  G                +   
Sbjct: 548 TGLPNHAEGELFRRADGS--FFSTEFWSHPIQ-QNGELVGA--VVTFIDISQRVLNQTAL 602

Query: 198 KRLDKKFSHLHEIKKGHSSVEKEKY---DIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254
           K  + K+  + E       +        D+ S             +  ++          
Sbjct: 603 KASELKYRTIFESVPTPLLILDTSGVVRDVNSAHQSTFGRFAGGSLMGVSIREHPGVAGS 662

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
              +  L  ++   +P Q+  +T+               N     F          L   
Sbjct: 663 LLAESFLALAKGEPMPLQQASYTMEAEGEAIH------FNVRGVPFVTRDGEGREDLQGA 716

Query: 315 FDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
               EN+T     +  +   V       +A   FL +  ++    + +  G++ LL    
Sbjct: 717 LVIHENITDLKQTELKLRKAVEEADCATHAKGDFLAVMSHEIRTPMNLVVGMAELLLETD 776

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
           ++         L ++  T ++    +  +    E  L +   PF       E      + 
Sbjct: 777 VNAEQKHYLEKLQKAGDTLLSLINNILDLTKLDEGQLKLLDEPFAPQALLDEVSGIISLA 836

Query: 435 PE 436
            E
Sbjct: 837 AE 838


>gi|116253334|ref|YP_769172.1| two-component sensor histidine kinase transcriptional regulatory
           protein [Rhizobium leguminosarum bv. viciae 3841]
 gi|115257982|emb|CAK09080.1| putative two-component sensor histidine kinase transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 1118

 Score =  354 bits (909), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 111/508 (21%), Positives = 201/508 (39%), Gaps = 32/508 (6%)

Query: 320 NLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
                 +   P+   +  +   + Y N  F  + +    D  +    +  +    +L   
Sbjct: 315 RDIENILRSLPVGVLILDNDHRILYINDEFYGIWELPLDDPFDGRPFIDVIRRNYELGRY 374

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQ--------WNRENSLAMTFIPFEKANQFPENMPQ 430
           +  +                 L   +        W    S+                   
Sbjct: 375 DGTQT------PEEIYDFRKHLFETEEPEPIELGWAGGKSVIFDSRRISNDRILLTYADI 428

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490
             +   + +    +  +E     L     A   G+AI+ ++GII  +N A++ +   P  
Sbjct: 429 TAVRERENEVHEARAALEHLGELLRDATHAMPQGLAIV-QDGIIKMSNEALAHILEIPAT 487

Query: 491 DI-LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST----KEEKLLSLRIII 545
            I   + +    +        H     +    R  +      ST      E+ +++   +
Sbjct: 488 YIETGQGWLGMFDFCAARGDFHEDAAEILQGWRDNIAARLPISTAFHVGGERWVNMDATV 547

Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
            K      +     D++E K  + +L      AE     KS+FLA +SHEIRTP+  ++G
Sbjct: 548 SK---GQHWVALFTDVTELKGREEELRQLLSRAEAADRAKSEFLANMSHEIRTPMNGVLG 604

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
            +E++           R   + + I +SGN +L I+ND+LD SKI++G+M L      + 
Sbjct: 605 MAELLAKTNLDT----RQKTFVDIIVKSGNALLTIINDILDFSKIDAGQMKLRKAAFDIT 660

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ 724
           EAV +  +L+  +A EK I +    A ++P  ++ D    +QI  N++ NA+ FT  G  
Sbjct: 661 EAVEDVATLLSSHAAEKNIELLVRAAPDLPAAVIGDAGRFRQIVTNLVGNAVKFTERGHV 720

Query: 725 -IIISTTHTSNEEV--ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
            + +     +  E+   +R+ DTG+G+ + +LE     F Q+  S   R EGTGLGL + 
Sbjct: 721 FVDVGFQPAAGGEIMACIRIEDTGIGIPSEKLESVFDKFSQVDASSTRRHEGTGLGLAIT 780

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             +VD   G   + S   KG++  I  P
Sbjct: 781 AGLVDLFGGYLNVESEWGKGSVFTINLP 808



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 55/146 (37%), Gaps = 5/146 (3%)

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
           E+  L +ILE       + + +  ++  N+      G+    +L          +    +
Sbjct: 181 ELDLLRTILEDLPVAAFVRDEKHRLVYANQYYETFSGHSRSRVLGMTEHEMFGPDGGEAI 240

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---YSLTMHDISEWKQ 566
             Y   +L+L   ++ E  +L  +K+  + S+   + ++  +        +  DIS  K+
Sbjct: 241 --YQENLLALQGGKSKEIESLLPSKDGHIYSVLSRVNRVVTADGRPYVVGSFSDISPLKE 298

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARV 592
            +  L  A+K  E       + L  +
Sbjct: 299 REKALIEAQKHKEVLHRDIENILRSL 324



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/387 (9%), Positives = 86/387 (22%), Gaps = 27/387 (6%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTT 148
           D    L   ++      G+   +++GM   ++      +         L+   +   ++ 
Sbjct: 200 DEKHRLVYANQYYETFSGHSRSRVLGMTEHEMFGPDGGEAIYQENLLALQGGKSKEIESL 259

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSG-FRGFGIVHV-----NRVDNDPRALGKRLDK 202
           L   +G    V   +  +          G F     +                L + ++ 
Sbjct: 260 LPSKDGHIYSVLSRVNRVVTADGRPYVVGSFSDISPLKEREKALIEAQKHKEVLHRDIEN 319

Query: 203 KFSHLH------EIKKGHSSVEKEKYDIFS-QQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255
               L       +       +  E Y I+      P   R    V          D    
Sbjct: 320 ILRSLPVGVLILDNDHRILYINDEFYGIWELPLDDPFDGRPFIDVIRRNYELGRYDGTQT 379

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS----- 310
            E+            E E          +       + N+                    
Sbjct: 380 PEEIYDFRKHLFETEEPEPIELGWAGGKSVIFDSRRISNDRILLTYADITAVRERENEVH 439

Query: 311 -LSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
              A  +    L  +     P    +   G +  +N +   + +  +       G L   
Sbjct: 440 EARAALEHLGELLRDATHAMPQGLAIVQDGIIKMSNEALAHILEIPATYIETGQGWLGMF 499

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
                  D +     +L        A            E  + M     +          
Sbjct: 500 DFCAARGDFHEDAAEILQGWRDNIAARLPISTAFHVGGERWVNMDATVSKG-------QH 552

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCS 456
              +  +  + +  + ++   + +  +
Sbjct: 553 WVALFTDVTELKGREEELRQLLSRAEA 579


>gi|189423187|ref|YP_001950364.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189419446|gb|ACD93844.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 774

 Score =  354 bits (909), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 117/637 (18%), Positives = 228/637 (35%), Gaps = 47/637 (7%)

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQ-QSPPPHLRMKNKVSSLTEYYAHKDDVLKT-- 256
            ++K     E      ++   +       +      R+ ++      +Y    ++ +   
Sbjct: 2   NEEKLRLFVEYAPAALAMFDREMRYLYVSRRWLTDYRLGDRDLRGLSHYDVFPEIQQRWK 61

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
           E +    + ES   + + F   +      +           E    +      +     +
Sbjct: 62  ELHSRCLAGESLSADSDRFVRADGTVQWLRWEIRPWFVTPDEIGGIVIFSEDITKLKQAE 121

Query: 317 EGENLTPETVDKC-PIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
           +              I  F+    G +  AN + +    Y   + +         +   +
Sbjct: 122 DVLRRYELLSKYSRDIALFIRRGDGRILEANDAAVRTYGYSHDELLG------MTIYDLR 175

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
             D  A  P  +  +D   I       T +         +       ++         + 
Sbjct: 176 TPDCAAPAPAQMEEADTHGILFETVHRTKEGRAFPVEVSSCGVDIGDDRI-----LLSLV 230

Query: 435 PEDVDTRINKRKME-------IEVMQLCSILEATSDGIAI-INREGIILSTNRAVSKLFG 486
            E    +  + +++         + +L ++++A    + I  +    +++ N A  +L  
Sbjct: 231 REISKRKEAEAELKRNAEVEHARLAELEALMQAVPAAVLISHDPHCHVITGNHAAYELLR 290

Query: 487 Y--------PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
                       D     F V  +    SV    L + ++  +                 
Sbjct: 291 MEYGSNTSKSNPDAKTSHFKVLHQGKELSVAELPLQQAIATGMP-VCNFEEEILFDNGDC 349

Query: 539 LSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
           +S+      L  +S           DI +  Q + +   A+  AE  +  KS FLA +SH
Sbjct: 350 VSVYGNAVPLRDASGSITGVVAAFVDIGQLVQAQEEARQARLAAEAANRAKSAFLANMSH 409

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           EIRTPL  I+G +++++  R          +Y   I  S + +L ++ND+LD+SKIE+GK
Sbjct: 410 EIRTPLNGIVGTAQLLEFTRLTG----EQKDYLADIKSSSSTLLSLLNDVLDLSKIEAGK 465

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILS 713
           + L      L  ++   I  ++  A  K + I     +++P  +  D    KQI LN+L 
Sbjct: 466 ITLESLDFRLRASIDGVIKSLKSLAQSKGLQIELQIPDSVPDCLKGDQTRFKQILLNLLG 525

Query: 714 NAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
           NA+ FT +GG I +S            + + V+DTG+G++   LE   +PF Q   S   
Sbjct: 526 NAVKFTETGG-ITVSVRLKEQHNDQLLLEIDVKDTGIGISPQMLEMIFEPFTQAETSLTK 584

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           +  GTGLGL + K +V    G+ +  S    G+   +
Sbjct: 585 KYGGTGLGLAICKRLVTMMGGQLWAESVAGGGSTFHL 621



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/384 (7%), Positives = 83/384 (21%), Gaps = 28/384 (7%)

Query: 90  DAHGYLKEISEELPKTIGNYAF--KMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
           D       +S               + G+   DV   +           L  ++      
Sbjct: 21  DREMRYLYVSRRW--LTDYRLGDRDLRGLSHYDVFPEIQQRWKELHSRCLAGESLSADSD 78

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                +GT  ++  ++   P +    E  G   F              + +R +    + 
Sbjct: 79  RFVRADGTVQWLRWEI--RPWFVTPDEIGGIVIF--SEDITKLKQAEDVLRRYELLSKYS 134

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
            +I      + +    I             +    L                P    E  
Sbjct: 135 RDIA---LFIRRGDGRILEANDAAVRTYGYSHDELLGMTIYDLRTPDCAAPAPAQMEEAD 191

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL------ 321
           +     +                +   +  +    LS     S     +           
Sbjct: 192 THGILFETVHRTKEGRAFPVEVSSCGVDIGDDRILLSLVREISKRKEAEAELKRNAEVEH 251

Query: 322 -----TPETVDKCPIPFFV-YSHG-NLFYANPSFLLLTK--YKSVDDIEIAGGLSTLLDA 372
                    +   P    + +    ++   N +   L +  Y S          ++    
Sbjct: 252 ARLAELEALMQAVPAAVLISHDPHCHVITGNHAAYELLRMEYGSNTSKSNPDAKTSHFKV 311

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
                  ++  + L ++  T +        I ++  + +++        +          
Sbjct: 312 LHQGKELSVAELPLQQAIATGMPVCNFEEEILFDNGDCVSVYGNAVPLRDASGSITGVVA 371

Query: 433 IEPEDVDTRINKRKMEIEVMQLCS 456
              +       + +      +L +
Sbjct: 372 AFVDIGQLVQAQEEARQ--ARLAA 393



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/263 (12%), Positives = 71/263 (26%), Gaps = 28/263 (10%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150
             G + E ++   +T G    +++GM + D+       P     +          +T   
Sbjct: 144 GDGRILEANDAAVRTYGYSHDELLGMTIYDLRTPDCAAPAPAQMEEADTHGIL-FETVHR 202

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
             EG    V +    + I              +V       +  A  KR  +        
Sbjct: 203 TKEGRAFPVEVSSCGVDIGDDR------ILLSLVREISKRKEAEAELKRNAEVEHARLAE 256

Query: 211 KKGHS---------SVEKEKYDIFSQQSPPPHLRMK-------NKVSSLTEY--YAHKDD 252
            +            S +   + I    +    LRM+       +   + T +    H+  
Sbjct: 257 LEALMQAVPAAVLISHDPHCHVITGNHAAYELLRMEYGSNTSKSNPDAKTSHFKVLHQGK 316

Query: 253 VLKTEKYPLLTSEESSLP---EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
            L   + PL  +  + +P    +E+    N +  +       L++ S      ++     
Sbjct: 317 ELSVAELPLQQAIATGMPVCNFEEEILFDNGDCVSVYGNAVPLRDASGSITGVVAAFVDI 376

Query: 310 SLSAYFDEGENLTPETVDKCPIP 332
                  E         +     
Sbjct: 377 GQLVQAQEEARQARLAAEAANRA 399


>gi|56695022|ref|YP_165368.1| sensory box sensor histidine kinase/response regulator [Ruegeria
           pomeroyi DSS-3]
 gi|56676759|gb|AAV93425.1| sensory box sensor histidine kinase/response regulator [Ruegeria
           pomeroyi DSS-3]
          Length = 743

 Score =  354 bits (909), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 84/386 (21%), Positives = 179/386 (46%), Gaps = 14/386 (3%)

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
              + ++   +  + + E   L  +    +D + + + EG I+ TN + ++  GY +++ 
Sbjct: 210 TTLDLIEQGRDLLRHQKEAQLLSLVARNANDSVILADSEGRIVWTNESFTRTTGYSLDEA 269

Query: 493 LRKPFTVFLEQNTPS-VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
             +     L  +     +++ + + +            L  TK+ + + +   +  +   
Sbjct: 270 KGRYPGELLNGDKTDLEVSNAIADAVEAGRP--FRTEILNVTKDGREIWMETNLVPVLDR 327

Query: 552 SC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
           +           D++  K +  +L+ A+  AE+ +  K++FLA +SHEIRTP+  ++G +
Sbjct: 328 NGKVEVTVAIERDVTAAKAQAEELAAARVAAEEGARAKAEFLATMSHEIRTPMNGVVGMA 387

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
           E++   +          +Y + I  S   +L I+ND+L++S++++ KM LH         
Sbjct: 388 ELLSETKLSI----EQRQYVDTIRSSSTALLAIINDILELSRLDARKMELHPVNFDPVSC 443

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QI 725
           V + + L++  A  K + +      ++P  +  D   ++Q+ +N+L NAI FT  GG  +
Sbjct: 444 VRDTMRLLKPQAQAKGLRLSLETGADVPPLVYGDDGRLRQVLINLLGNAIKFTERGGVTL 503

Query: 726 IISTTHTSNEEV-ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
            + +       +  L V DTG+G+   ++E+  + F Q          GTGLGL +++ +
Sbjct: 504 RLRSEAQDPGYLLTLEVEDTGIGIAAEKIERVFERFSQADADTTRLYGGTGLGLTISREL 563

Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPL 810
           V    G+  + ST  +G+   +  PL
Sbjct: 564 VALMGGRITVDSTLGQGSCFTLCLPL 589



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/391 (9%), Positives = 98/391 (25%), Gaps = 29/391 (7%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL--HIDPNNHIGDLLKRQNTWYGKT 147
           D+ G +   +E   +T G    +  G    ++ +     ++ +N I D ++    +  + 
Sbjct: 246 DSEGRIVWTNESFTRTTGYSLDEAKGRYPGELLNGDKTDLEVSNAIADAVEAGRPFRTEI 305

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                +G    + ++   +P+  RN +        I                        
Sbjct: 306 LNVTKDGR--EIWMETNLVPVLDRNGKVE--VTVAIERDVTAAKAQAEELAAARVAAEEG 361

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
              K    +    +              +     S+ +          +     L +  +
Sbjct: 362 ARAKAEFLATMSHEIRTPMNGVVGMAELLSETKLSIEQRQYVDTIRSSSTA---LLAIIN 418

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE-------- 319
            + E        +  +       +   ++    +  +      LS               
Sbjct: 419 DILELSRLDARKMELHPVNFDPVSCVRDTMRLLKPQAQAKGLRLSLETGADVPPLVYGDD 478

Query: 320 -NLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGG------LSTLLDA 372
             L    ++           G +     S      Y    ++E  G       +  + + 
Sbjct: 479 GRLRQVLINLLGNAIKFTERGGVTLRLRSEAQDPGYLLTLEVEDTGIGIAAEKIERVFER 538

Query: 373 PKLSDNNAIKP-----VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
              +D +  +      + L  S         R+       + S     +P    +     
Sbjct: 539 FSQADADTTRLYGGTGLGLTISRELVALMGGRITVDSTLGQGSCFTLCLPLGSPDDDAGQ 598

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458
                + P ++D     R +  +  ++  +L
Sbjct: 599 SDGQVLSPAELDRLRGLRVLVADDNRVNRLL 629


>gi|258514836|ref|YP_003191058.1| multi-sensor hybrid histidine kinase [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257778541|gb|ACV62435.1| multi-sensor hybrid histidine kinase [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 1267

 Score =  354 bits (909), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 90/397 (22%), Positives = 177/397 (44%), Gaps = 23/397 (5%)

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
           +  I  +    + ++ K+     +L  + E   +   +      +L  + A  KLFG   
Sbjct: 348 RLSIREKITKLKDSEEKLRQSEEKLRQLAENLDELFWLRTHR-EMLYVSPAFEKLFGKKC 406

Query: 490 EDILRKP--FTVFLEQNTPSVMNHYLTEILSLDLR---QTLEKITLGSTKEEKLLSLRII 544
              L  P  F  F+  +         +  +                  + + ++  +   
Sbjct: 407 TSFLENPDTFLEFVHPDDRGKAISIFSGSIGKQEDIFDGAYNDEFRIVSPDGEICWIWAK 466

Query: 545 IKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
              +  +    +       D++  K+ +  L+ AK+ AE  +  KS+FLA +SHEIRTP+
Sbjct: 467 TVPVKDADGEVVRIAGVASDVTVRKKLEQALTEAKEEAEYSARVKSEFLANMSHEIRTPM 526

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
             IIGF  ++   +     N + + Y   I      +L I+ND+LD SK+E+GKM++   
Sbjct: 527 NGIIGFCHLLMQTQL----NSKQLNYLTKIRSQSQHLLGIINDILDFSKLEAGKMSVEHV 582

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFT 719
             +L+E +++   L++  A++K + +  +    +P  +  D   +KQ+ +N+ +NAI F+
Sbjct: 583 DFNLEEVIADLFYLLENQASQKGLELLANVQKGVPAHLKGDPLRLKQVLVNLANNAIKFS 642

Query: 720 PSGGQIIISTTH-----TSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
             G  I +         + +++VI+   V D G+G+T  ++++    F Q  +S   +  
Sbjct: 643 DQG-NIFLRVEKIDQSDSDSDQVIISFSVEDNGIGLTEEQMQRLFNSFSQADSSTTRKYG 701

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GTGLGL ++K +V+   G+  + S    G+      P
Sbjct: 702 GTGLGLAISKYLVELMGGEISVSSEYGVGSTFSFSLP 738


>gi|17229406|ref|NP_485954.1| hypothetical protein all1914 [Nostoc sp. PCC 7120]
 gi|17131004|dbj|BAB73613.1| all1914 [Nostoc sp. PCC 7120]
          Length = 1123

 Score =  354 bits (908), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 93/770 (12%), Positives = 229/770 (29%), Gaps = 66/770 (8%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH-IDPNNHIGDLLKRQNTWYGK 146
            +D  G L  ++    +  G    +++G  + +       I         LK        
Sbjct: 240 RVDNLGRLTFVNPVACRIFGKPMDELVGQLIFEWMFPEDEIPQAKEYFQALKSPPHKISI 299

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
           +   P+   +         + I +   E   F+G G               ++ + + + 
Sbjct: 300 SEQ-PVLTPSGIRWFQWNVIGIKNTIGEVVEFQGVG--RDITECRQAEESLRQSEARLNL 356

Query: 207 LHEIKKGHSS---------VEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257
             E                +      +                    +    +D    ++
Sbjct: 357 ALEAANMGIWDWYLLTNETIWSANMGLLYGLPSTTLCPSPE---DFLQLIHPQDRENFSQ 413

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
                  +      +      + + +          +   +    +      S     + 
Sbjct: 414 SVKNSIEQGMPFTVEYRTVWKDGSIHWLNSRGQVYYDKPGKPIRMIGTTRDISERKQAEA 473

Query: 318 GENLTPET----VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
               + E     V        +     +   N S   +        ++        L   
Sbjct: 474 SLRESEELYRSVVTAMREGIILQDKVKIIACNASAERILGLSKEQILQRTCVDERWLTIH 533

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
           +       +      + RT    S  +  +         ++        +          
Sbjct: 534 EDGSPFPGEQHPAMETLRTGKPCSNVVMGVYKPDGQISWISINSQPLCRENETVPYAVVT 593

Query: 434 EPEDVDTRINKRKMEIEVMQ----LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
              D+  +    ++  +  Q      ++L+  +D I + +    IL  N+   +L+G+  
Sbjct: 594 SFADISEQQAALRLRQQAEQKIREQAALLDIATDAIFVKDLHTNILFWNQGAERLYGWSQ 653

Query: 490 EDILRKPFTVFLEQN-TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
           ++ + +     L    +  +    L  ++ L      +      TK  K + +      +
Sbjct: 654 QEAIGRNAQKLLYSETSLHLHEAALNVVMELG---LWQGELQKLTKSGKEIIVESRWTLM 710

Query: 549 PFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
             ++       +   DI++ KQ + +    +++              ++H++   LT I+
Sbjct: 711 RDAAGLPKSILIVDTDITQKKQLEEQFFRTQRL-----ESLGTLAGGIAHDLNNILTPIL 765

Query: 605 GFSEVIK----NQRFG--PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
             S+++K      + G    G          ++ +      +V  +L  ++   G+  + 
Sbjct: 766 AASQLLKVKFPEDKGGTPTAGGTSSQHLLEIVENNARRGAGLVKQVLSFARGFKGERTI- 824

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718
              V L   +++ I L+      K I   +SF   +  +  D+  + Q+ +N++ NA   
Sbjct: 825 ---VQLKHLITDII-LIGKQTFPKSIEFTSSFPEVLWAVCGDVTQLHQVLMNLVVNARDA 880

Query: 719 TPSGGQIIIS--------------TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764
            P+GG+I ++                      + L V DTG G++   L +  +PF    
Sbjct: 881 MPNGGKINVTADNIFIDETYASMILEAQVGNYIQLTVTDTGAGISPEILNRIFEPFFTTK 940

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
                 G GTGLGL     ++ ++ G   + S   +G+  ++  P    +
Sbjct: 941 ----EVGVGTGLGLSTVLGIIKSHGGFVKVSSKVGQGSQFKVFLPAIPAT 986



 Score = 87.8 bits (216), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 19/154 (12%), Positives = 59/154 (38%), Gaps = 3/154 (1%)

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
           + + V+ +  K+ ++        ++E  ++ I  ++  G +   N    ++FG P+++++
Sbjct: 207 QRDIVEVQQPKQALQQSEQLYRQLVELQTEVILRVDNLGRLTFVNPVACRIFGKPMDELV 266

Query: 494 RK-PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK--LPF 550
            +  F     ++       Y   + S   + ++ +  + +    +     +I  K  +  
Sbjct: 267 GQLIFEWMFPEDEIPQAKEYFQALKSPPHKISISEQPVLTPSGIRWFQWNVIGIKNTIGE 326

Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
              +     DI+E +Q +  L  ++         
Sbjct: 327 VVEFQGVGRDITECRQAEESLRQSEARLNLALEA 360


>gi|251795530|ref|YP_003010261.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           sp. JDR-2]
 gi|247543156|gb|ACT00175.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           sp. JDR-2]
          Length = 591

 Score =  354 bits (908), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 83/398 (20%), Positives = 186/398 (46%), Gaps = 26/398 (6%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
             K ++  E         E ++ ++ +  +     QL S+L+   +G+ +I+  G IL  
Sbjct: 218 VRKQDEVGELGHAINAMAESLEVQMTR--IRQNESQLESVLDNMINGVMMIDPAGKILLM 275

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
           +R   +L G    +++ + +    E      ++  + E L       + +       EE+
Sbjct: 276 SRRAGELLGISSGELVGRNYA---EAKQQYELSQLIQEALEGREH--IREEITFYFPEER 330

Query: 538 LLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
           LL L ++             L + D++  ++ +                +S+F+A VSHE
Sbjct: 331 LLELNLVPINQENQEFGGVLLVLADVTAIRRLE--------------RMRSEFVANVSHE 376

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           ++TP+ A+ GF+E +               +   I    + +  ++ D+L +SKIES ++
Sbjct: 377 LKTPIAAVKGFAETLLGGAVN--DEETARSFLQIIYDESDRLNRLIGDILALSKIESKRV 434

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715
            L+F PV +D  +++ +++++  A +K I ++    + +  + AD   ++QI +N+++N 
Sbjct: 435 PLYFSPVEMDSFMTKTVTMMESEAAKKSIKLQLEMEHGL-YVEADEDRLRQIMMNVIANG 493

Query: 716 IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           +++TP GG++ ++      + + +++ DTG+G+   +L +  + F ++  ++     GTG
Sbjct: 494 VNYTPEGGKVSVNIESIDEDHIRIQISDTGIGIPKKDLPRIFERFYRVDKARSRSSGGTG 553

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
           LGL + K +V+ + G   + S    G+   I  P+   
Sbjct: 554 LGLSIVKHLVELHKGTIAVTSAVGVGSTFVIELPVLQQ 591



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/175 (14%), Positives = 55/175 (31%), Gaps = 15/175 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G +  +S    + +G  + +++G    +      +     I + L+ +     + T
Sbjct: 266 IDPAGKILLMSRRAGELLGISSGELVGRNYAEAKQQYELSQ--LIQEALEGREHIREEIT 323

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
            +  E   L    +L  +PI   N+EF G           +        +RL++  S   
Sbjct: 324 FYFPEERLL----ELNLVPINQENQEFGGVL---------LVLADVTAIRRLERMRSEFV 370

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
                           F++      +  +    S  +    + D L      +L 
Sbjct: 371 ANVSHELKTPIAAVKGFAETLLGGAVNDEETARSFLQIIYDESDRLNRLIGDILA 425


>gi|75676406|ref|YP_318827.1| Signal transduction histidine kinase [Nitrobacter winogradskyi
           Nb-255]
 gi|74421276|gb|ABA05475.1| signal transduction histidine kinase [Nitrobacter winogradskyi
           Nb-255]
          Length = 605

 Score =  354 bits (908), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 115/387 (29%), Positives = 188/387 (48%), Gaps = 14/387 (3%)

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
           +   R +   + +E  +   +     D I+   R G +   + A   L G PV ++    
Sbjct: 185 ETLMRTSASMLNVEENRYRLLARHMCDVISRHRRNGAVQFISPAAESLLGVPVSELQGHG 244

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS---------TKEEKLLSLRIIIKK 547
               +           L         Q++E                     + + +  + 
Sbjct: 245 LFDRVHVADRPAYLTALAAAALGKGAQSVEFRLRRDAASDAEFEGHPSGNFIWVEMRCQP 304

Query: 548 L----PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
           L    P        M D+++ KQ+++ L  A+  AE+  + K+ FLA +SHE+RTPL AI
Sbjct: 305 LEPSSPAEPEVVAVMRDVTDRKQQEHALDLARTAAERADAAKTRFLATMSHELRTPLNAI 364

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           IGFS++I  +   PL   R  EYA  I+ SG  +L +VN +LD+SK+ESG   +  EP +
Sbjct: 365 IGFSDMIVQEATLPLDATRRKEYAQLINDSGQHLLSVVNSILDMSKMESGSFEILPEPFA 424

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
             E +    +L+ L A +  I + T    N+P+++ D R+ +QI LN++SNAI FT  GG
Sbjct: 425 PREVLLSGSNLLALKARDNDIELVTRVPENLPQMVGDPRAFRQIVLNLVSNAIKFTERGG 484

Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
           ++ IS        ++LRV D GVG+   +L++   PF Q   + Q R EGTGLGL + K+
Sbjct: 485 RVTISARVE-GARMVLRVVDNGVGIAQEDLKRIGDPFFQAGKTYQRRHEGTGLGLSIVKS 543

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFPL 810
           +V  + G+  + S   +GT + ++ PL
Sbjct: 544 LVGLHGGEIDVQSKVEEGTTVTVMLPL 570


>gi|239908806|ref|YP_002955548.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
            RS-1]
 gi|239798673|dbj|BAH77662.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
            RS-1]
          Length = 1375

 Score =  354 bits (908), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 124/661 (18%), Positives = 222/661 (33%), Gaps = 43/661 (6%)

Query: 182  GIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG--HSSVEKEKYDIFSQQSPPPHLRMKNK 239
             +              +  +++   + +      +       Y   S             
Sbjct: 591  DLAWDIAEHKKAEESLRSSEERLRIISDNTYDWEYWRAPDGSYLWVSPSCKTVSGYSPED 650

Query: 240  VSSLTEY----YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTIN--LNQYTKKQYFGTLQ 293
             +           H DD     ++  +    +   ++ DF  +               + 
Sbjct: 651  FTGDAATLIRNIVHPDDHDIWAEHVKVVDSYNPDHQELDFRIVKPTGEVVWIGHTCKPIF 710

Query: 294  NN----SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSF 348
            ++                         E E       D+ PI    + + G +F  N  F
Sbjct: 711  SDDGLFLGRRGCNRDTTERKRSEEAIRESEERYRLLFDQSPIGIVNFDNVGTIFDLNSKF 770

Query: 349  LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
              +      D +        L D   +   N      L   +    + +           
Sbjct: 771  AEIIG-APKDKLIGLNMPKDLTDLKLIEAVNTALAGTLGIFEGNYTSVT---------GR 820

Query: 409  NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468
             +  +  +      Q    +    I  +  + +  +  +    + L         G    
Sbjct: 821  KTTPVRCMFKGIFAQDGNCLGGLAIVEDITERKQAEEVLRERELFLLETQRIARVGGWKA 880

Query: 469  NREGIILST----NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
            N E   L      NR +    GY         F           +   L ++L+      
Sbjct: 881  NIETNFLFWTDEVNRIIEMPTGYKPSLSEGLSF---YAPEFLPEIREMLKKVLNEGSSAE 937

Query: 525  LEKITLGSTKEEKLLSLRIIIKKLPFSSCYS-LTMHDISEWKQEKNKLSHAKKIAEKESS 583
            LE   +      K   LR + + +         T  DI E K+ + +L++A+  AE  S 
Sbjct: 938  LECEVITGRGTRKWTHLRAVGRIVEKGQSLVLGTFQDIDERKKVELELNNARLKAEAASK 997

Query: 584  HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
             KS+FLA +SHEIRTPL  ++G  +++++       +    EY     +S   +  ++ D
Sbjct: 998  AKSEFLANMSHEIRTPLNGVLGMLQLLESTS----KDAEQDEYIEAAKKSSTRLTRLLAD 1053

Query: 644  LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLR 702
            +LD+SKIE+GKM L     S  +     + L +L   EK + +       +P R++ D  
Sbjct: 1054 ILDLSKIEAGKMILEEADFSFVDLKESTLGLFELAVKEKGLKLDFVIDELLPARLVGDQI 1113

Query: 703  SVKQIALNILSNAIHFTPSGGQIIISTTH-----TSNEEVILRVRDTGVGMTNYELEKAM 757
             ++QI  N++ NAI FT +G  + +   H        + V+  V DTG+G+    + +  
Sbjct: 1114 RLQQILFNLVGNAIKFTETG-DVRVEACHLPCSNDDIQRVLFIVSDTGIGIAQGMIAQVF 1172

Query: 758  KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
            +PF Q   S   R +G GLGL + + +V    G   I ST   GT   +  PL   S P 
Sbjct: 1173 EPFTQAEGSYTRRFQGAGLGLSIVRKLVTQMGGSLAIDSTEGTGTTFYLSLPLKH-SAPS 1231

Query: 818  D 818
            D
Sbjct: 1232 D 1232



 Score =  133 bits (335), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 54/547 (9%), Positives = 151/547 (27%), Gaps = 59/547 (10%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            W++DA  +   ++  + K +G    +M+G R+ D      +  +     + +       
Sbjct: 335 IWSMDADYHTAFVNSAMAKMLGYSVEEMLGKRVDDFFFDEDMVFHAQRMKVRQSGGDEVY 394

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR----------- 194
           +      +G+ L+  +  +A  +      F+G   F +                      
Sbjct: 395 ERRFKRKDGSQLWTLV--SAKALKDSGGSFAG--SFAMFTDITDRKRAENIIQARLRLMQ 450

Query: 195 -ALGKRLDKKFSHLHEIKK----------GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL 243
            A    L++      +  +           +   +++   + +  +       + +   L
Sbjct: 451 LAASCSLEELLIATVDEAEVLTNSKVGFYHYLDEDQKTLLLQAWSTRTIREMCQAEGIGL 510

Query: 244 ----------TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL- 292
                      +    +  V+  +   L   +            + +  + + Q    L 
Sbjct: 511 HYDVAKAGVWVDCILSRQAVIHNDYEALTHKKGMPEGHPPVIRELVVPVFRQNQIVAILG 570

Query: 293 ---------QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-----H 338
                      + +            +     +E    + E +       + +       
Sbjct: 571 VGNKPIDYDNADIEAITLLADLAWDIAEHKKAEESLRSSEERLRIISDNTYDWEYWRAPD 630

Query: 339 GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398
           G+  + +PS   ++ Y   D    A  L   +  P   D  A    ++   +        
Sbjct: 631 GSYLWVSPSCKTVSGYSPEDFTGDAATLIRNIVHPDDHDIWAEHVKVVDSYNPDHQELD- 689

Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458
               I       + +        +     + + G   +  + + ++  +     +   + 
Sbjct: 690 --FRIVKPTGEVVWIGHTCKPIFSDDGLFLGRRGCNRDTTERKRSEEAIRESEERYRLLF 747

Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
           + +  GI   +  G I   N   +++ G P + ++       L   T   +   +   L+
Sbjct: 748 DQSPIGIVNFDNVGTIFDLNSKFAEIIGAPKDKLIGLNMPKDL---TDLKLIEAVNTALA 804

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKK 576
             L       T  + ++   +            +       + DI+E KQ +  L   + 
Sbjct: 805 GTLGIFEGNYTSVTGRKTTPVRCMFKGIFAQDGNCLGGLAIVEDITERKQAEEVLREREL 864

Query: 577 IAEKESS 583
              +   
Sbjct: 865 FLLETQR 871



 Score =  130 bits (328), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 38/292 (13%), Positives = 84/292 (28%), Gaps = 16/292 (5%)

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEI 362
                           N+    +D  P P F           N +   L   K    +  
Sbjct: 180 EETRRVEAERELQRRANMLQGIIDAIPSPIFAKDEDLRYTTCNTALEKLLGAKPASLL-- 237

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
             G S     P+       +                 +   +    +   + F   +  +
Sbjct: 238 --GKSVFDIYPRAQAEVYDRMDRELLQQGGVQEYEGHMANAE---GSLRNILFHKAKCHD 292

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
              +     G+  +  + ++ +  +++   +   I++  ++GI  ++ +      N A++
Sbjct: 293 FLNDACGLVGVMTDITERKLTEDALKMSEERYRLIIDTANEGIWSMDADYHTAFVNSAMA 352

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
           K+ GY VE++L K    F            +    S               K+   L   
Sbjct: 353 KMLGYSVEEMLGKRVDDFFFDEDMVFHAQRMKVRQSGGDEV---YERRFKRKDGSQLWTL 409

Query: 543 IIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHA-KKIAEKESSHKSDFL 589
           +  K L  S            DI++ K+ +N +    + +    S    + L
Sbjct: 410 VSAKALKDSGGSFAGSFAMFTDITDRKRAENIIQARLRLMQLAASCSLEELL 461



 Score = 88.9 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 44/541 (8%), Positives = 131/541 (24%), Gaps = 52/541 (9%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI-GDLLKRQNTWY 144
            +  D        +  L K +G     ++G  + D+      +  + +  +LL++     
Sbjct: 209 IFAKDEDLRYTTCNTALEKLLGAKPASLLGKSVFDIYPRAQAEVYDRMDRELLQQGGVQE 268

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            +  +   EG+     I       +    +  G    G++             K  ++++
Sbjct: 269 YEGHMANAEGSLRN--ILFHKAKCHDFLNDACGL--VGVMTDITERKLTEDALKMSEERY 324

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPP---HLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
             + +            Y      S         ++  +    + +   +D++   +   
Sbjct: 325 RLIIDTANEGIWSMDADYHTAFVNSAMAKMLGYSVEEMLGKRVDDFFFDEDMVFHAQRMK 384

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
           +         +  F   + +Q         L+++        +     +     +     
Sbjct: 385 VRQSGGDEVYERRFKRKDGSQLWTLVSAKALKDSGGSFAGSFAMFTDITDRKRAENIIQA 444

Query: 322 TPETVDKCPIP----FFVYSHGNLFYANPSFLLLTKYKSVDD------------IEIAGG 365
               +            + +         S +    Y   D             I     
Sbjct: 445 RLRLMQLAASCSLEELLIATVDEAEVLTNSKVGFYHYLDEDQKTLLLQAWSTRTIREMCQ 504

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF- 424
              +     ++        +L R         A  H       +   +  +      Q  
Sbjct: 505 AEGIGLHYDVAKAGVWVDCILSRQAVIHNDYEALTHKKGMPEGHPPVIRELVVPVFRQNQ 564

Query: 425 -------------------PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465
                                      +  +  + +  +  +     +L  I + T D  
Sbjct: 565 IVAILGVGNKPIDYDNADIEAITLLADLAWDIAEHKKAEESLRSSEERLRIISDNTYDWE 624

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILR---KPFTVFLEQNTPSVMNHYLTEILSLDLR 522
                +G  L  + +   + GY  ED            +  +   +   ++  ++     
Sbjct: 625 YWRAPDGSYLWVSPSCKTVSGYSPEDFTGDAATLIRNIVHPDDHDIWAEHVK-VVDSYNP 683

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS----LTMHDISEWKQEKNKLSHAKKIA 578
              E          +++ +    K +               D +E K+ +  +  +++  
Sbjct: 684 DHQELDFRIVKPTGEVVWIGHTCKPIFSDDGLFLGRRGCNRDTTERKRSEEAIRESEERY 743

Query: 579 E 579
            
Sbjct: 744 R 744



 Score = 67.7 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 47/379 (12%), Positives = 90/379 (23%), Gaps = 21/379 (5%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMR---LCDVSDILHIDPNNHIGDLLKRQNTW 143
           W     G    +S       G       G     + ++      D       ++   N  
Sbjct: 626 WRA-PDGSYLWVSPSCKTVSGYSPEDFTGDAATLIRNIVHPDDHDIWAEHVKVVDSYNPD 684

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
           + +     ++ T   V I     PI+S +  F G RG                 +  +++
Sbjct: 685 HQELDFRIVKPTGEVVWIGHTCKPIFSDDGLFLGRRGCN--RDTTERKRSEEAIRESEER 742

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
           +  L +              IF   S         K+K+  L       D  L       
Sbjct: 743 YRLLFDQSPIGIVNFDNVGTIFDLNSKFAEIIGAPKDKLIGLNMPKDLTDLKLIEAVNTA 802

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN---SKESFEYLSHRNHPSLSAYFDEG 318
           L              T       +  + G    +                        E 
Sbjct: 803 LAGTLGIFEGNYTSVTGRKTTPVRCMFKGIFAQDGNCLGGLAIVEDITERKQAEEVLRER 862

Query: 319 ENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
           E    ET     +  +      N  +       + +  +     ++ GLS    AP+   
Sbjct: 863 ELFLLETQRIARVGGWKANIETNFLFWTDEVNRIIEMPTGYKPSLSEGLS--FYAPEFLP 920

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
                  ML +      +A      I          T +               G   + 
Sbjct: 921 EIRE---MLKKVLNEGSSAELECEVITGRGTRKW--THLRAVGRIVEKGQSLVLGTFQDI 975

Query: 438 VDTRINKRKMEIEVMQLCS 456
            + +    ++E+   +L +
Sbjct: 976 DERKKV--ELELNNARLKA 992


>gi|317050263|ref|YP_004111379.1| PAS sensor protein [Desulfurispirillum indicum S5]
 gi|316945347|gb|ADU64823.1| PAS sensor protein [Desulfurispirillum indicum S5]
          Length = 1070

 Score =  354 bits (908), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 110/533 (20%), Positives = 207/533 (38%), Gaps = 24/533 (4%)

Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK-CPIPFFVYSHGNLFYANPSFL 349
           +L   +  +F + +      +SA     E       ++     F +   G +  +NP+  
Sbjct: 283 SLMALAVGTFLWRNMLARDRISAELRSSEERYRTLFERSLDSIFLIDDEGQVSESNPAAQ 342

Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
            L ++           ++++ +       N    + L  + R           I  + E 
Sbjct: 343 SLVEHS-----IGHFAMNSIFELLAPEGENLQAMLDLVNAARQ---GHRAQQEIIISGEK 394

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469
            + +            +      +       + ++ ++     +   +  A  + I  I+
Sbjct: 395 PIYLDVHAVS-----MDETHILLVARNITRRKTSELRLRESEQRFRDVSNAAGEYIWEID 449

Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
            +G        V  + GYP E++L +     +       +    + I+    +       
Sbjct: 450 SDGCFTFLTDRVVDVLGYPAEELLGRSPFSLIPPEDAQKVQRVFSRIVRA-QKSFSGFSY 508

Query: 530 LGSTKEEKLLSLRII----IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
              T+   ++ L I     +        Y     DI+  K+ +  L  A++ AE  S  K
Sbjct: 509 RCITRSGTIIWLEISGVPIVGPYGTVQGYRGVGLDITLRKRAEEALQEARRQAEDSSQLK 568

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
           S FLA +SHE+RTPL AI+G+SE+++             +    I  +G  +L ++ND+L
Sbjct: 569 SMFLANMSHELRTPLNAILGYSEMLQEDAAVMGAQEMVGD-LAKIHSAGEHLLRLINDVL 627

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
           DISKIE+GKM+++ E V++   V +    +     + +         N+  +  DL  V+
Sbjct: 628 DISKIEAGKMDVYLEEVNIARLVRDVADTITPLVRKNKNHFHLECGQNLGAMHTDLTKVR 687

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILRVRDTGVGMTNYELEKAMKPFGQ 762
           QI  N+L+NA  FT +G  I +      + E   +  +V DTG+G+    L    + F Q
Sbjct: 688 QILFNLLNNAAKFTQNGS-ITLRVQCQEDREIPTISFQVIDTGIGIEQQRLSSLFQSFTQ 746

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
              S   +  GTGLGL ++++      G     S P  G+   +  PL    H
Sbjct: 747 ADVSISRKYGGTGLGLAISQSYSHLLGGGITAHSKPGAGSTFCLTLPLIRQPH 799



 Score = 78.5 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 22/167 (13%), Positives = 57/167 (34%), Gaps = 5/167 (2%)

Query: 60  ESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLC 119
              S     +SE  F  D       + W ID+ G    +++ +   +G  A +++G    
Sbjct: 420 RKTSELRLRESEQRFR-DVSNAAGEYIWEIDSDGCFTFLTDRVVDVLGYPAEELLGRSPF 478

Query: 120 DVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGF 178
            +               +++ Q ++ G +    I  +   + ++++ +PI        G+
Sbjct: 479 SLIPPEDAQKVQRVFSRIVRAQKSFSGFS-YRCITRSGTIIWLEISGVPIVGPYGTVQGY 537

Query: 179 RGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF 225
           RG G+     +        +   ++     ++K    +    +    
Sbjct: 538 RGVGL--DITLRKRAEEALQEARRQAEDSSQLKSMFLANMSHELRTP 582


>gi|197106142|ref|YP_002131519.1| sensor histidine kinase (non-motile and phage-resistance protein )
           [Phenylobacterium zucineum HLK1]
 gi|196479562|gb|ACG79090.1| sensor histidine kinase (non-motile and phage-resistance protein )
           [Phenylobacterium zucineum HLK1]
          Length = 621

 Score =  354 bits (908), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 126/600 (21%), Positives = 224/600 (37%), Gaps = 53/600 (8%)

Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
           H+   +      LL +  +                        L          L     
Sbjct: 25  HRFARIGVLCALLLLAVYAVAALARFGGGAQSAAEQLAWIAAPLLVAIGLGVLLLVESLR 84

Query: 309 -PSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIA--GG 365
                A F + E      V+      + +          +   +   +    +     G 
Sbjct: 85  VERAHAAFSDSEQRFRMAVEAARCGIWEWDL--------AADKIFMSEVTAALFGWRGGV 136

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE-KANQF 424
           +       ++S  +         +                     + +            
Sbjct: 137 VDGQQVLDRVSPGHRDGLREALANAAIYGDFDVSFRVPSLAGGRPIWIDARGRGFGEAPE 196

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
                  G+  +  + R+ + + +    +L   +E+ S+   + +R G +L  NR     
Sbjct: 197 GGYARIIGVALDVTEERLAQARAQQAESRLRDAIESVSEAFVLWDRHGRLLMCNRNYRDY 256

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
           F      +          +         + +       +   +       + + + +   
Sbjct: 257 FKLESGLL----LAGVGREQVERAARMAVRQEYPAPGDRRGVREAEL--ADGRWVQISER 310

Query: 545 IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE----------------------- 581
                      +T  DI+  K ++      ++   +                        
Sbjct: 311 PT---AEGGLVVTAADITVLKAQEEARRLKEEELRRAVFNLERSQEQLSELARKYEAEKI 367

Query: 582 -----SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
                S  KS+FLA +SHE+RTPL AI GFSE++  + +GPLG+ RY +YA  I  SG  
Sbjct: 368 RAEGASQAKSEFLANMSHELRTPLNAINGFSEIMVAEMYGPLGDARYRDYARDILNSGQH 427

Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696
           +L ++ND+LD+SKIE+GKM+L F+P SL+E   +A+ LV+  A    + +   F   +P 
Sbjct: 428 LLALINDILDMSKIEAGKMSLRFDPCSLEEIAEDALRLVRNRAESAGLTLVLDFVE-LPE 486

Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN---EEVILRVRDTGVGMTNYEL 753
           + AD R+VKQ+ LN+LSNAI FTP GG+I +      +   + V + V+DTG+G+   +L
Sbjct: 487 VEADYRAVKQVLLNLLSNAIKFTPRGGRITLRAERRDDPLGQRVRVSVQDTGIGIAPEDL 546

Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
           E+  +PF Q+ +      +GTGLGL L KA V+ + G   + S P +GT      P+  +
Sbjct: 547 ERLARPFEQVESQHAKTQQGTGLGLALTKAFVELHGGLLDLKSAPGQGTTASFSLPVRQS 606


>gi|196234229|ref|ZP_03133060.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428]
 gi|196221688|gb|EDY16227.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428]
          Length = 1174

 Score =  354 bits (908), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 125/807 (15%), Positives = 252/807 (31%), Gaps = 105/807 (13%)

Query: 86   TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID--PNNHIGDLLKRQNTW 143
             +     G +   +  L +  G    + +  ++ DV+  L++D      + D L+ ++T 
Sbjct: 265  IFQTTPDGRILTANRALARMYGYDTPEHLIEKVTDVAAQLYVDSTQRQALLDALRVEDTV 324

Query: 144  YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVD---NDPRALGKRL 200
                    +      + +      I           G   V            R L   L
Sbjct: 325  SNFEFEV-VRADGRLIWVRENVRAIRDEKGGLRYLEG--TVEDVSDVWWGEQRRRLQYAL 381

Query: 201  DKKFSHLHEIKKGHSSVEKEKYDIFSQQS-----------------PPPHLRMKNKVSSL 243
             +       +++    +           +                     + M+    +L
Sbjct: 382  ARVLGDSATVEEARPRIISTICKALGWDAGIFFEATSGALHAIEMWHATDIEMEELRMAL 441

Query: 244  TEYYAHKDDVLK-TEKYPLLTSEESSLPEQEDFHTINLNQY------------------- 283
                 H+   L             + L E+  +   +L                      
Sbjct: 442  PHLVYHRGHRLAGEAWAEGEPKWIAELSEELHYANADLLLACGMSSVFAVPISVDGEVRY 501

Query: 284  --------TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV 335
                            LQ     S +                 E      +         
Sbjct: 502  VLELFSSKIALPDSELLQVLGSISSQLGHLVERKLAEEALRRSEMRKAAILRSALDCIIT 561

Query: 336  YS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK-PVMLYRSDRTC 393
            +   G +   NP+      Y + + +     L+ L+    L +++     +    +  + 
Sbjct: 562  FDLEGKITEFNPAAERAFGYSAEEAMGRE--LAGLIIPETLRESHRRGLALYNATTVGSM 619

Query: 394  IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
                  L  ++ +         I     +  P          +  + +  +R       +
Sbjct: 620  AGRRMELVAMRADGSEFPIEMSISRFVIDGKPMFTAY---MRDITERQQAERI----TSE 672

Query: 454  LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
            L +++  ++D I     +G I+S N    +++GY  E+++ K   + +  +        L
Sbjct: 673  LAAVVANSNDAIVACTLDGKIVSWNVGAERIYGYAAEEVIGKQLDILIPPDRLDEFPQAL 732

Query: 514  TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKN 569
            T +            T+   K+ K LS+ +    +               DI+E K+ + 
Sbjct: 733  TMVKRG--ESVANYETMRVRKDGKRLSMSLTDSPIRSEGGRVTGLSSIARDITERKRLEE 790

Query: 570  KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY--IEYA 627
            +L  ++K+              ++H+    LTAI+G+S+++  Q      + R    ++ 
Sbjct: 791  ELLQSQKMD-----AVGRLAGGIAHDFNNILTAILGYSDLLIGQI-----DERQWMYKHL 840

Query: 628  NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
            + I ++ +    + + LL  S+    +  L     ++++ V     ++Q    E  I I 
Sbjct: 841  SEIRKAADFAASLTHQLLAFSR----RQPLFLRVFNINDTVKNMQKMLQRVIGEH-IQIH 895

Query: 688  TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT--------------HTS 733
            T     I R+ AD   ++Q+ LN+  NA    P+GG I I T                 +
Sbjct: 896  THLKAEIGRLKADPSQLEQVLLNLCVNARDAMPNGGSISIETADVTYFLDDFYSVNEMPA 955

Query: 734  NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
             E V L + DTG GMT    +   +PF         +G+GTGLGL     +V  ++G   
Sbjct: 956  GEYVKLTICDTGTGMTADVKKHIFEPFFTTK----EKGQGTGLGLATCYGIVKQSLGYIT 1011

Query: 794  IFSTPAKGTLIEIIFPLYDTSHPHDCI 820
            + S    GT   I  P  D S     I
Sbjct: 1012 VDSQVGVGTTFSIYLPRVDESGEKSSI 1038



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/402 (9%), Positives = 103/402 (25%), Gaps = 27/402 (6%)

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
               H  +  + +      +    L +       T+      +   T       +     
Sbjct: 9   TSSSHRRIGSDAFAFGLVAAFIAVLSLGLWWLWKTDVEWAHVEDRMTAWTQAAETSGELG 68

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKE--SFEYLSHRNHPSLSAYFDEGENLTPETVD 327
           P     + + +      +        +                 S           + VD
Sbjct: 69  PILASIYALGVQPLPPGEKGNPDAVVAIRKTYEGKYGIVAERVRSLAIAADRTTVLKEVD 128

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
                        +     + L      S  +      L+  L   +     A K +   
Sbjct: 129 NIQTAALAMLE-RV-----ATLRGPDRPSDTEPGDPERLNEALAGLQSRYQEAAKALQRL 182

Query: 388 RSDRTCIAASARLHTIQWNREN-----SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
           +      A       I+   +       +         A           +     D  +
Sbjct: 183 QQHERNFATELSEERIELAEKYHNLAYGVCGVLFLIFIAGVGSLLRRHREVRKNFADLDV 242

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            ++       +  S+ +   +GI     +G IL+ NRA+++++GY   + L +  T    
Sbjct: 243 LQKAQRAAEHEFHSLFDNAIEGIFQTTPDGRILTANRALARMYGYDTPEHLIEKVTDVAA 302

Query: 503 --QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS----L 556
                 +     L  +   D     E   +    + +L+ +R  ++ +            
Sbjct: 303 QLYVDSTQRQALLDALRVEDTVSNFEFEVV--RADGRLIWVRENVRAIRDEKGGLRYLEG 360

Query: 557 TMHDIS------EWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
           T+ D+S      + ++ +  L+     +      +   ++ +
Sbjct: 361 TVEDVSDVWWGEQRRRLQYALARVLGDSATVEEARPRIISTI 402


>gi|154251392|ref|YP_001412216.1| multi-sensor signal transduction histidine kinase [Parvibaculum
           lavamentivorans DS-1]
 gi|154155342|gb|ABS62559.1| multi-sensor signal transduction histidine kinase [Parvibaculum
           lavamentivorans DS-1]
          Length = 617

 Score =  354 bits (908), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 116/390 (29%), Positives = 186/390 (47%), Gaps = 4/390 (1%)

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSK 483
            +      ++ E    +  ++ +        SI  A    I++++     ++  N A   
Sbjct: 220 RQQELYEQLKREVEVRQEAEQAVRATEESFQSIFYAAPLPISLVDPSTFRVMQANMAALA 279

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           LFG    +        F ++         L  +L       +E              +  
Sbjct: 280 LFGIDETEADGFDVREFFDEEDLPARLDRL--VLGGRAGAPVEFCLKRRDGAVIWALVSA 337

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
            +          + + D++   +E   L  A+  A   S  KS+FLA +SHE+RTPL AI
Sbjct: 338 AVVSFHGRRALLIGIQDVTVRHKEAEALREARDQATAASRSKSEFLANMSHELRTPLNAI 397

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           IGFSE ++ + FGP+GNPRY EYA  I  SG  +L ++ND+LD+SKIE+G   LH +   
Sbjct: 398 IGFSEALERELFGPVGNPRYREYAEDIHDSGVHLLSLINDILDLSKIEAGHFKLHEDETD 457

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
           LD  V+ A  +V+  A +  I I          +L D R++KQ+ +N++SNA+ F+P G 
Sbjct: 458 LDHIVAAATRIVRHRAQQANIAIECRLPQPPLAVLVDERALKQVLINLVSNAVKFSPDGS 517

Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
            I++    T+   + + V D GVG+   ++ +A+ PF Q+  S     EGTGLGLPLAK 
Sbjct: 518 LILVEANVTTQG-LRISVADKGVGIAPEDIPRALTPFTQLDGSLSRAHEGTGLGLPLAKH 576

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
           + + + GK +I S    GT + +  PL   
Sbjct: 577 LTELHDGKLFIESAVDVGTTVYVDLPLSRV 606



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/197 (12%), Positives = 52/197 (26%), Gaps = 9/197 (4%)

Query: 273 EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP 332
           E   + N  + T        Q   ++    +  R     +    E    +       PI 
Sbjct: 202 ELVRSANRLRRTGFLTLMRQQELYEQLKREVEVRQEAEQAVRATEESFQSIFYAAPLPIS 261

Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDD--------IEIAGGLSTLLDAPKLSDNNAIKPV 384
               S   +  AN + L L      +          +     + L          A    
Sbjct: 262 LVDPSTFRVMQANMAALALFGIDETEADGFDVREFFDEEDLPARLDRLVLGGRAGAPVEF 321

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
            L R D   I A      + ++   +L +        ++  E + +   +        ++
Sbjct: 322 CLKRRDGAVIWALVSAAVVSFHGRRALLIGIQDVTVRHKEAEALREARDQATAASRSKSE 381

Query: 445 RKMEIEVMQLCSILEAT 461
             +     +L + L A 
Sbjct: 382 F-LANMSHELRTPLNAI 397


>gi|251794485|ref|YP_003009216.1| multi-sensor hybrid histidine kinase [Paenibacillus sp. JDR-2]
 gi|247542111|gb|ACS99129.1| multi-sensor hybrid histidine kinase [Paenibacillus sp. JDR-2]
          Length = 1267

 Score =  354 bits (908), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 116/499 (23%), Positives = 202/499 (40%), Gaps = 28/499 (5%)

Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
             +  +  + Y N +   L  Y + +    A  L  +       +   +   +    +  
Sbjct: 357 ILLDENYRVSYMNQAAEKLIGYTTDELKGHATPLLFMDPDEIEREAERLSQKLGEHVEPG 416

Query: 393 CIAASA---------RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
                          R  T        + +        +Q        G+  +  +    
Sbjct: 417 LEVFRMLRQVDFSYERQWTYVHKDGTKIPVRHFSNGLRDQQGRLTGVLGMAYDISE---- 472

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
             K+E     L  I+ +  D IA I+  G +   N+A  ++ G P++    K +  ++E 
Sbjct: 473 HVKVEKSRNLLLDIIGSAKDLIASIDHNGKVAYINKAGKRMLGLPLDY-KPKDYKSYVEP 531

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDI 561
           +    +       + +   +  E   L    ++  +SL I+      +    +S    DI
Sbjct: 532 SMYLYLIKGSRIAMKMGYWEG-EAELLTQAGDKVNVSLVIVAHPYRNTGELYFSCIARDI 590

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           +E K  + +L  A + AE+ ++ KS FLA VSHEIRTPL  IIG S++++     P    
Sbjct: 591 TEQKHIQEELIQATQEAEQANAAKSRFLAMVSHEIRTPLNGIIGLSQLMRRTGLSP---- 646

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
              +Y + +  S   +L I+NDLLD SKIE+GK+ +        E +S     + ++   
Sbjct: 647 SQKDYMDKLGNSSESLLRIINDLLDFSKIEAGKVEVERVAFQPQEMLSRLTDQLSVFMGG 706

Query: 682 K-RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ---IIISTTHTSNEE 736
           K +          +P  +L D   V+QI LN+  NA+ FT  G     + +    +   +
Sbjct: 707 KEQFEFILEVPEQLPTTLLGDQMRVEQILLNLCMNAVKFTERGHVKLALEVMEQCSDGLK 766

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           +   V DTG+GMT  +++K   PF Q   S   +  GTGLGL +A  +V    GK  + S
Sbjct: 767 LQFTVEDTGIGMTKKQIDKLFTPFTQADGSTTRKYGGTGLGLVIANGLVKMMGGKIQVDS 826

Query: 797 TPAKGTLIEI--IFPLYDT 813
            P  G+       FP+  +
Sbjct: 827 EPGLGSRFSFVLSFPVLSS 845



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/160 (13%), Positives = 44/160 (27%), Gaps = 22/160 (13%)

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK--PFTVFLEQNTPSVMN 510
           +L +I+        +++    +   N+A  KL GY  +++     P              
Sbjct: 344 RLEAIINQNEYSFILLDENYRVSYMNQAAEKLIGYTTDELKGHATPLLFMDPDEIEREAE 403

Query: 511 HYLTEILSLDLRQT------------LEKITLGSTKEEKLLSLRIIIKKLPFSS----CY 554
               ++                     E+      K+   + +R     L          
Sbjct: 404 RLSQKLGEHVEPGLEVFRMLRQVDFSYERQWTYVHKDGTKIPVRHFSNGLRDQQGRLTGV 463

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
               +DISE  + +   +    I         D +A + H
Sbjct: 464 LGMAYDISEHVKVEKSRNLLLDIIGSA----KDLIASIDH 499



 Score = 41.6 bits (96), Expect = 0.60,   Method: Composition-based stats.
 Identities = 29/257 (11%), Positives = 67/257 (26%), Gaps = 23/257 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH----------------IDPNNH 132
           +D +  +  +++   K IG    ++ G     +                     ++P   
Sbjct: 359 LDENYRVSYMNQAAEKLIGYTTDELKGHATPLLFMDPDEIEREAERLSQKLGEHVEPGLE 418

Query: 133 IGDLLKRQN-TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRG--FGIVHVNRV 189
           +  +L++ + ++  + T    +GT + V      L    +    +G  G  + I    +V
Sbjct: 419 VFRMLRQVDFSYERQWTYVHKDGTKIPVRHFSNGL--RDQQGRLTGVLGMAYDISEHVKV 476

Query: 190 DNDPRALGKR--LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247
           +     L       K      +     + + K    +            K+ V      Y
Sbjct: 477 EKSRNLLLDIIGSAKDLIASIDHNGKVAYINKAGKRMLGLPLDYKPKDYKSYVEPSMYLY 536

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
             K   +  +        E      +  +   +      +  G L  +            
Sbjct: 537 LIKGSRIAMKMGYWEGEAELLTQAGDKVNVSLVIVAHPYRNTGELYFSCIARDITEQKHI 596

Query: 308 HPSLSAYFDEGENLTPE 324
              L     E E     
Sbjct: 597 QEELIQATQEAEQANAA 613


>gi|192290144|ref|YP_001990749.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           TIE-1]
 gi|192283893|gb|ACF00274.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           TIE-1]
          Length = 903

 Score =  354 bits (908), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 110/598 (18%), Positives = 232/598 (38%), Gaps = 47/598 (7%)

Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
            L      + +    +       H +++               S      L    +    
Sbjct: 41  SLSVMAGRIASQHTRAWEPPGVGHGLDVP--WWIFVISLAVGLSIAGLIELQLSRYER-R 97

Query: 313 AYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
                 +      V+         S  G +   N +   L  + +   I      + L+ 
Sbjct: 98  NAHKLRQAHLAAIVEGSSYAIVGQSIDGTVLSWNKTAERLFGHTAERAIGQN--ATELMV 155

Query: 372 APKLSDNN-------------AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
              L D               A       R++ T +  +  +  I+ +    + M     
Sbjct: 156 PDDLRDEEQQMLSGISDGTAFAYLWTKRKRANGTLVDVAVSISPIRADDGRLIGMAASMR 215

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKR--KMEIEVMQLCSILEATSDGIAIINREGIILS 476
           +  +   +   +       ++ ++ +R  ++E  +    +ILE  +  +   +  G I  
Sbjct: 216 DITD-LVQAEREVHDLNAALERQVAERTCQLEKTLTLQTAILERAAYAVIATDVTGTITL 274

Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL---TEILSLDLRQTLEKITLGST 533
            N A  ++ GY  ED++ +   +    +              I        L+     + 
Sbjct: 275 FNPAAERMLGYKAEDLIGRASAMLFHDSDELAARAEAMRKEGISVSSNLGVLQARLARND 334

Query: 534 KE----------EKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAE 579
            +             +  R+ + +L   +           D++E  + +++L  A+  AE
Sbjct: 335 PDTAMWTYIDAMGNRIPTRLTLSRLRTKTGVNLGVLGIAVDLTEQLKYEDELKAARASAE 394

Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639
           + S+ K+DFLA +SHEIRTPL  IIG+++++           R       I  + + +  
Sbjct: 395 QASAAKADFLANMSHEIRTPLNGIIGYADLVLEDETLAPDTRRQ---VMRIFEASDSLRV 451

Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA 699
           I++D+LD SKIE+  + L  +P+ ++E ++   S+++  A+EK + +  +     P ++ 
Sbjct: 452 IIDDILDFSKIEACGLTLESKPLYINELIANCASIIEPKADEKGLKLIATAQATPPVLIG 511

Query: 700 DLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNE--EVILRVRDTGVGMTNYELEKA 756
           D   ++Q+ LN+++NA+ FT +G  ++I+S     +    + + V DTG+G++    +  
Sbjct: 512 DAGRLRQVLLNLMNNAVKFTTAGSVELIVSCIGRVDHLVRLRISVADTGIGISPEAQKGL 571

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL--IEIIFPLYD 812
            K F Q   +   +  GTGLGL +++ +V A  G+  I S P  G+    E+  P+ +
Sbjct: 572 FKRFSQADETISRKFGGTGLGLAISQRIVQAMHGELKIDSQPGVGSTFYFEVELPVAE 629



 Score = 55.4 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/279 (7%), Positives = 62/279 (22%), Gaps = 41/279 (14%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI-DPNNHIGDLLKRQNTWYGKTTLW 150
            G +   ++   +  G+ A + IG    ++     + D    +   +     +    T  
Sbjct: 124 DGTVLSWNKTAERLFGHTAERAIGQNATELMVPDDLRDEEQQMLSGISDGTAFAYLWTKR 183

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA----LGKRLDK---- 202
                 L V + ++  PI + +    G      +               L   L++    
Sbjct: 184 KRANGTL-VDVAVSISPIRADDGRLIGMA--ASMRDITDLVQAEREVHDLNAALERQVAE 240

Query: 203 ----------KFSHLHEIKKGHSSVEKEKYDIFSQQSPPP---HLRMKNKVSSLTEYYAH 249
                       + + E              I             + ++ +   +    H
Sbjct: 241 RTCQLEKTLTLQTAILERAAYAVIATDVTGTITLFNPAAERMLGYKAEDLIGRASAMLFH 300

Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDFHTINLN----------------QYTKKQYFGTLQ 293
             D L      +     S                              +   +     L+
Sbjct: 301 DSDELAARAEAMRKEGISVSSNLGVLQARLARNDPDTAMWTYIDAMGNRIPTRLTLSRLR 360

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP 332
             +  +   L      +    +++       + ++    
Sbjct: 361 TKTGVNLGVLGIAVDLTEQLKYEDELKAARASAEQASAA 399



 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/368 (9%), Positives = 77/368 (20%), Gaps = 39/368 (10%)

Query: 80  PRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR 139
            R        D  G +   +    + +G  A  +IG     +      D      + +++
Sbjct: 257 ERAAYAVIATDVTGTITLFNPAAERMLGYKAEDLIGRASAMLFH--DSDELAARAEAMRK 314

Query: 140 QNTWYG---------------KTTLW-PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI 183
           +                     T +W  I+     +P  L    + ++     G  G  +
Sbjct: 315 EGISVSSNLGVLQARLARNDPDTAMWTYIDAMGNRIPTRLTLSRLRTKTGVNLGVLGIAV 374

Query: 184 VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL 243
                         K            K    +           ++P   +     +   
Sbjct: 375 --DLTEQLKYEDELKAARASAEQASAAKADFLANMSH-----EIRTPLNGIIGYADLVLE 427

Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303
            E  A          +    S    + +  DF  I     T +     +          +
Sbjct: 428 DETLAPDTRRQVMRIFEASDSLRVIIDDILDFSKIEACGLTLESKPLYINELIANCASII 487

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYA-----NPSFLLLTKYKSVD 358
             +                     +   P  +   G L        N +    T      
Sbjct: 488 EPKADEKGLKLIATA---------QATPPVLIGDAGRLRQVLLNLMNNAVKFTTAGSVEL 538

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
            +   G +  L+       +  I      +       + A     +      L +     
Sbjct: 539 IVSCIGRVDHLVRLRISVADTGIGISPEAQKGLFKRFSQADETISRKFGGTGLGLAISQR 598

Query: 419 EKANQFPE 426
                  E
Sbjct: 599 IVQAMHGE 606


>gi|32476458|ref|NP_869452.1| sensory transduction histidine kinase- sensory histidine kinase /
           response regulator hybrid [Rhodopirellula baltica SH 1]
 gi|32447003|emb|CAD78909.1| sensory transduction histidine kinase-putative sensory histidine
           kinase / response regulator hybrid [Rhodopirellula
           baltica SH 1]
          Length = 871

 Score =  354 bits (908), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 99/511 (19%), Positives = 199/511 (38%), Gaps = 42/511 (8%)

Query: 338 HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397
            G   +AN S+L        +    AG     L  P+++         + ++  +  +  
Sbjct: 58  DGRRVFANDSYLKWRGVTWQEL---AGKHDEDLFPPEIARKYREDDQKVMQTGESLHSVE 114

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
               + +   ++   +  +     +     +    +  +       ++  + E   L ++
Sbjct: 115 ----SAKLADDSIGWIERVKTAVHDHHGNLLGVQVLFWDVTAKVEEEKATQFEQSLLKTL 170

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           L    D I   + +   +  + A++  FG   V+++  +                    +
Sbjct: 171 LANIPDSIYFKDIDSRFIRVSHAMAMKFGRASVDEVHGRTDADIFTPEHAEGARLDELRV 230

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLS 572
           +                 + +          L   +           DI++ K+ +  L 
Sbjct: 231 IETGEALVDRVERET-WPDREDTWCMTTKMPLRNDTGEIIGTFGISRDITDLKRSEAALH 289

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
            A ++A+  +  KS+FLA +SHEIRTP+ A+IG ++++   +     +P   +Y   I  
Sbjct: 290 EAVRMADAANRSKSEFLANMSHEIRTPMNALIGMADLLSQTKL----DPDQQDYVQIIQE 345

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
           S N +L ++ND+LD SKIE+ ++ L   P SL + +   +      A+EK + ++   + 
Sbjct: 346 SSNGLLRLINDILDFSKIEARRLELESVPFSLGKTIESTLRSFSFKASEKGLELQRDISP 405

Query: 693 NIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI----------------------IIST 729
            +P  ++ D   V+Q+  N++ NAI FT  GG                          S 
Sbjct: 406 ELPDRLIGDPGRVRQVLTNLIGNAIKFTDHGGVRVRVEVLRREERADRDLAATHSGRESP 465

Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
                 E+ L V D+G+G+   + +  + PF Q   S   R  GTGLGL +++ +V+   
Sbjct: 466 ERDDMVELRLSVCDSGIGIPPAQQDAVLNPFTQADASTTRRFGGTGLGLSISRQLVELMG 525

Query: 790 GKFYIFSTPAKGTLIEIIF--PLYDTSHPHD 818
           G+ ++ S    GT        P+   S P++
Sbjct: 526 GELHLQSEVGVGTTFSFQLKMPVCPASMPNE 556



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/259 (10%), Positives = 64/259 (24%), Gaps = 23/259 (8%)

Query: 90  DAHGYLKEISEELPKTIGN-YAFKMIGMRLCDVSDILHIDPNN-HIGDLLKRQNTWYGKT 147
           D       +S  +    G     ++ G    D+    H +        +++       + 
Sbjct: 182 DIDSRFIRVSHAMAMKFGRASVDEVHGRTDADIFTPEHAEGARLDELRVIETGEALVDRV 241

Query: 148 TL--WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
               WP              +P+ +   E  G   FGI           A      +   
Sbjct: 242 ERETWP---DREDTWCMTTKMPLRNDTGEIIGT--FGISRDITDLKRSEAALHEAVRMAD 296

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
             +  K    +    +          P   +      L++     D     +     ++ 
Sbjct: 297 AANRSKSEFLANMSHEIR-------TPMNALIGMADLLSQTKLDPDQQDYVQIIQESSNG 349

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
              L    D    +  +  + +      +  K     L   +  +     +   +++PE 
Sbjct: 350 --LLRLINDILDFSKIEARRLELESVPFSLGKTIESTLRSFSFKASEKGLELQRDISPEL 407

Query: 326 VDKCPIPFFVYSHGNLFYA 344
            D+      +   G +   
Sbjct: 408 PDRL-----IGDPGRVRQV 421



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/245 (8%), Positives = 63/245 (25%), Gaps = 7/245 (2%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTWYGKTTL 149
           A G     ++   K  G    ++ G    D+               +++   + +   + 
Sbjct: 57  ADGRRVFANDSYLKWRGVTWQELAGKHDEDLFPPEIARKYREDDQKVMQTGESLHSVESA 116

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRG-FGIVHVNRVDNDPRALGKRLDKKFSHLH 208
              + +     I+     ++  +    G +  F  V     +       + L K      
Sbjct: 117 KLADDSIG--WIERVKTAVHDHHGNLLGVQVLFWDVTAKVEEEKATQFEQSLLKTLLANI 174

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY---AHKDDVLKTEKYPLLTSE 265
                   ++     +    +        ++V   T+         +  + ++  ++ + 
Sbjct: 175 PDSIYFKDIDSRFIRVSHAMAMKFGRASVDEVHGRTDADIFTPEHAEGARLDELRVIETG 234

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
           E+ +   E     +            L+N++ E           +     +   +     
Sbjct: 235 EALVDRVERETWPDREDTWCMTTKMPLRNDTGEIIGTFGISRDITDLKRSEAALHEAVRM 294

Query: 326 VDKCP 330
            D   
Sbjct: 295 ADAAN 299


>gi|254416757|ref|ZP_05030507.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
 gi|196176497|gb|EDX71511.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
          Length = 657

 Score =  354 bits (908), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 94/382 (24%), Positives = 176/382 (46%), Gaps = 23/382 (6%)

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
           + ++++    K  +     Q   ++    DGI +I+  GI+   N A   LF    +++L
Sbjct: 159 QQDNLEKEQIKAALAKSETQFQVLISKNPDGIVVIDSGGIVRFINPAALSLFSRQEDELL 218

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553
            +     +     +                  E      T   ++  +R++  +      
Sbjct: 219 GQVLGFPVVGEDNT------------------EVDVRTGTGANRVAQMRVVEIEWQGKKG 260

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
           Y +++ DI+E KQ + +     + AE  +  K +FLA VSHE+RTPL  I+G+S++++ +
Sbjct: 261 YLVSLRDITEQKQVEEERIQLLEKAEAANRIKDEFLAIVSHELRTPLNPILGWSKLLRTR 320

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
           +   L   +  +    I+R+ +L   +++DLLD+S+I  GK+NL    V L   +  AI 
Sbjct: 321 K---LNQDKVDQALETIERNASLQAQLIDDLLDVSRILRGKLNLQTLRVDLVRVIQAAIE 377

Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
            ++L A  K I I T   + +  +  D   ++Q+  N+LSNA+ FTP GG+I +      
Sbjct: 378 TMRLAAAAKSIEIDTQLDSTVGFVSGDPNRLQQVVWNLLSNAVKFTPKGGRITVRLQEID 437

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
           + +  ++V DTG G++          F Q  ++      G GLGL + + +++ + G+  
Sbjct: 438 S-QAQIQVSDTGQGISPDFFPYIFDYFRQENSTTTRSVGGLGLGLAIVRHLIELHGGRIE 496

Query: 794 IFST-PAKGTLIEIIFPLYDTS 814
             S    +G    +  PL   S
Sbjct: 497 AESEGIGQGATFTVTLPLMPDS 518


>gi|116754787|ref|YP_843905.1| PAS/PAC sensor signal transduction histidine kinase [Methanosaeta
           thermophila PT]
 gi|116666238|gb|ABK15265.1| PAS/PAC sensor signal transduction histidine kinase [Methanosaeta
           thermophila PT]
          Length = 761

 Score =  354 bits (908), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 111/755 (14%), Positives = 246/755 (32%), Gaps = 68/755 (9%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEG 154
           ++  +      +G    +++G    D      I              T   +      +G
Sbjct: 34  IEYANPAFAHMLGFSLSEIVGKSTEDFLHPDDIPLLLESRAKRLEGLTTSYEVRFLRKDG 93

Query: 155 TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214
           +   VP+ +   P    NR      G  ++             K   ++   + E     
Sbjct: 94  SI--VPVLITGAPRIVDNRP---AGGILVITDLTDYYSVLRQLKNSQRRLMDILEFMPDP 148

Query: 215 SSVEKEKYDIFSQQSPPPHLR-------------------MKNKVSSLTEYYAHKDDVLK 255
           +        +         L                       +   L +   H  D   
Sbjct: 149 ALGMDMDGRVIIWNRALEALTGVRKEEMLGKGNYECAIPFYGYRRPVLADLVLHGYDESM 208

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA-- 313
           + +Y  L  +   L  +    T              + ++       +      + +   
Sbjct: 209 SREYRNLQRDGDVLTAEVFIPTFGPEGSHLWLKAALIYDSEGRIEGAIEVIRDITENVKR 268

Query: 314 --YFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
                  E      V+  P     +   G L + N ++     ++  D +  +       
Sbjct: 269 LNALSLSEARYRSIVEGMPFLVCRFDRDGVLTFVNENYCNYFGFRREDIVGRSFL----- 323

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
               + ++     +  +R            H +    E      +       Q  E +  
Sbjct: 324 --ELIPEDEREAVLERFRGLTRERPYVTYTHRV-KRGEEIRWQRWTDRAIFGQNGEVLEY 380

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490
             +  +    +  +  +     +   + E+T+ GIAI+ R+   +  NRA  ++ GY  +
Sbjct: 381 QSLGEDITAEKNMEDALRESEHRFRVLAESTAAGIAIM-RDERFVYVNRAGEEMSGYSRD 439

Query: 491 DILRKPFTVFLEQNTPSVMNH-YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
           +++  P  + +     + +   Y  ++         E   +    + + +       +L 
Sbjct: 440 ELIGAPVWMVVHPEDAAWLKKMYSRKLRGEPTPPRYEFRIITKNGDVRWVEYASGTLELG 499

Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKK-----------IAEKESSHKSDFLARVSHEIRT 598
                  T+ DI+E +Q + +L   K+             E+ ++    F+  VSH++R 
Sbjct: 500 GEMALIGTLIDITERRQAEEELRRFKESLEQMVEERTAELEQRNAEIESFVYTVSHDLRR 559

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
           PL  I G +  +           +  E    + RS   +  ++ D+L++S+I  GK+   
Sbjct: 560 PLITISGLA-GLAEFDLEKGNLEKARESLRTVQRSCENMDALLRDILELSRI--GKVTNP 616

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718
            E V  +  V EAI  +     ++   +R   A  +P +  D   + +  +N++ N+I +
Sbjct: 617 PEDVPFELLVREAIDQLAEAVKKRSAELRV--AEGMPTVRVDRERLVEALVNLIDNSIKY 674

Query: 719 TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
           T    + +I   +      +  VRD G+G+   + EK    F ++      + +GTG+GL
Sbjct: 675 TGEDTRPVIEIFYRDG---VFCVRDNGIGIPESQREKVFDLFYKVDP----KSDGTGVGL 727

Query: 779 PLAKAMVDANMGKFYIFSTPAKG---TLIEIIFPL 810
            + K +++ + G+ +I S    G   T      P+
Sbjct: 728 SIVKRIIEVHGGRIWIESD---GCSWTAFCFTLPV 759



 Score =  117 bits (293), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 39/392 (9%), Positives = 92/392 (23%), Gaps = 31/392 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ--NTWYGK 146
           +D  G +   +  L    G    +M+G    + +   +      + DL+      +   +
Sbjct: 152 MDMDGRVIIWNRALEALTGVRKEEMLGKGNYECAIPFYGYRRPVLADLVLHGYDESMSRE 211

Query: 147 TTLWPIEGTNLYVPID------------LAALPIYSRNREFSGFRGFGIVHVNRVDNDPR 194
                 +G  L   +             L A  IY       G     ++     +    
Sbjct: 212 YRNLQRDGDVLTAEVFIPTFGPEGSHLWLKAALIYDSEGRIEGA--IEVIRDITENVKRL 269

Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS---PPPHLRMKNKVSSLTEYYAHKD 251
                 + ++  + E              +             R ++ V         +D
Sbjct: 270 NALSLSEARYRSIVEGMPFLVCRFDRDGVLTFVNENYCNYFGFRREDIVGRSFLELIPED 329

Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
           +     +     + E                  ++     +   + E  EY S     + 
Sbjct: 330 EREAVLERFRGLTRERPYVTYTHRVKRGEEIRWQRWTDRAIFGQNGEVLEYQSLGEDITA 389

Query: 312 SA----YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
                    E E+      +       +       Y N +   ++ Y   + I     + 
Sbjct: 390 EKNMEDALRESEHRFRVLAESTAAGIAIMRDERFVYVNRAGEEMSGYSRDELIGAPVWMV 449

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
                    D   +K +   +              I  N +              +    
Sbjct: 450 V-----HPEDAAWLKKMYSRKLRGEPTPPRYEFRIITKNGDVRWVEYAS---GTLELGGE 501

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459
           M   G   +  + R  + ++      L  ++E
Sbjct: 502 MALIGTLIDITERRQAEEELRRFKESLEQMVE 533



 Score = 87.4 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 36/285 (12%), Positives = 87/285 (30%), Gaps = 34/285 (11%)

Query: 318 GENLTPETVDKCPIPFFV----YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
              L  + ++       V         + YANP+F  +  +   + +         L   
Sbjct: 7   DRELAFQILNSLGQGVVVSKVVDERWIIEYANPAFAHMLGFSLSEIVGK--STEDFLHPD 64

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
            +      +   L   +    +   R   ++ +      +        +  P       +
Sbjct: 65  DIPLLLESRAKRL---EGLTTSYEVRF--LRKDGSIVPVLITGAPRIVDNRP--AGGILV 117

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
             +  D     R+++    +L  ILE   D    ++ +G ++  NRA+  L G   E++L
Sbjct: 118 ITDLTDYYSVLRQLKNSQRRLMDILEFMPDPALGMDMDGRVIIWNRALEALTGVRKEEML 177

Query: 494 RK-PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
            K  +   +           L +++     +++ +      ++  +L+  + I       
Sbjct: 178 GKGNYECAIPFYGYR--RPVLADLVLHGYDESMSREYRNLQRDGDVLTAEVFIPTFGPEG 235

Query: 553 ------------------CYSLTMHDISEWKQEKNKLSHAKKIAE 579
                                  + DI+E  +  N LS ++    
Sbjct: 236 SHLWLKAALIYDSEGRIEGAIEVIRDITENVKRLNALSLSEARYR 280



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 68/522 (13%), Positives = 141/522 (27%), Gaps = 52/522 (9%)

Query: 52  SNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAF 111
            N    N  S+S   Y        F             D  G L  ++E      G    
Sbjct: 264 ENVKRLNALSLSEARYRSIVEGMPF--------LVCRFDRDGVLTFVNENYCNYFGFRRE 315

Query: 112 KMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSR 171
            ++G    ++      +        L R+  +   T          +      A  I+ +
Sbjct: 316 DIVGRSFLELIPEDEREAVLERFRGLTRERPYVTYTHRVKRGEEIRWQRWTDRA--IFGQ 373

Query: 172 NREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231
           N E   ++  G       + +     +  + +F  L E      ++ +++  ++  ++  
Sbjct: 374 NGEVLEYQSLG--EDITAEKNMEDALRESEHRFRVLAESTAAGIAIMRDERFVYVNRAGE 431

Query: 232 P--HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTI--NLNQYTKKQ 287
                     + +      H +D    +K           P + +F  I  N +    + 
Sbjct: 432 EMSGYSRDELIGAPVWMVVHPEDAAWLKKMYSRKLRGEPTPPRYEFRIITKNGDVRWVEY 491

Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANP- 346
             GTL          +      +     +E      E++++            L   N  
Sbjct: 492 ASGTL--ELGGEMALIGTLIDITERRQAEEELRRFKESLEQM----VEERTAELEQRNAE 545

Query: 347 --SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
             SF+    +     +    GL+ L +      N       L    R+C    A L  I 
Sbjct: 546 IESFVYTVSHDLRRPLITISGLAGLAEFDLEKGNLEKARESLRTVQRSCENMDALLRDI- 604

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
                   +      K    PE++P   +  E +D       ++    +L  + E     
Sbjct: 605 --------LELSRIGKVTNPPEDVPFELLVREAIDQLAE--AVKKRSAELR-VAEGMPT- 652

Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILR-----KPFTVFLEQNTPSVMNHYLTEILSL 519
              ++RE       R V  L       I       +P      ++    +      I   
Sbjct: 653 -VRVDRE-------RLVEALVNLIDNSIKYTGEDTRPVIEIFYRDGVFCVRDNGIGIPES 704

Query: 520 DLRQTLE-KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
              +  +    +    +   + L I+ + +           D
Sbjct: 705 QREKVFDLFYKVDPKSDGTGVGLSIVKRIIEVHGGRIWIESD 746


>gi|291287080|ref|YP_003503896.1| multi-sensor hybrid histidine kinase [Denitrovibrio acetiphilus DSM
           12809]
 gi|290884240|gb|ADD67940.1| multi-sensor hybrid histidine kinase [Denitrovibrio acetiphilus DSM
           12809]
          Length = 1322

 Score =  353 bits (907), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 105/479 (21%), Positives = 199/479 (41%), Gaps = 35/479 (7%)

Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM-LYRSDRTCIAASA 398
            + Y +PS   +  +     +             +         +  + R       A  
Sbjct: 485 RITYVSPSIEQICGFPPEYLLGKPLE----YLVQESDGVIFDHWIENVLRRHGEQRVAEL 540

Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458
           R+      R  +     +  +   +            +    +  + +++    +L  ++
Sbjct: 541 RI----LKRSGAYLNAEVLAKNMLENNVINGVVVNIRDVTVRKKAEEELK----KLALVM 592

Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
           E   + I I + +G I   N A  K+ GY +E+ L K   V    +T   +   L + ++
Sbjct: 593 EQNPNSIVITDIDGNIEFVNPAFEKITGYSLEEALGKNPNVLKTDHTEPAVFEELWKTVT 652

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHA 574
               +      +   K  +L     II  +         Y     +I+E KQ        
Sbjct: 653 KG--EVWNGEFVNKKKNGELYIEHAIIAPIMNDRGEIVNYLGMKENITELKQA------- 703

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
           +  AE+ +  KS FLA +SHEIRTPL  ++GF E++K+       +    EY + I  S 
Sbjct: 704 RAKAEESNRAKSMFLANMSHEIRTPLNGLMGFLELLKHTPL----DSEQAEYLSTIKFSA 759

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
           + +L I+ND+LD+SKIESG M++    ++L   +   +      A+ K + + +     +
Sbjct: 760 DTLLKILNDILDLSKIESGMMDIESSEMNLGFQILSTVKAFYAKASAKGVRLYSYIDPQV 819

Query: 695 PR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN----EEVILRVRDTGVGMT 749
           P  +L D   + Q+  N+L+NA+ FT +GG I ++    +       V++ V DTGVG+ 
Sbjct: 820 PSSLLGDALRISQVVSNLLNNAVKFTHAGGVIKVNVELKNETKKTATVLIAVEDTGVGIP 879

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           + +++   +PF Q+ +S   +  GTGLGL +++ ++        + S   KG+      
Sbjct: 880 DGKIKSVFEPFAQVDSSVTRKYGGTGLGLTISRNLLKLMKSDIELKSEKGKGSKFYFEL 938



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 41/417 (9%), Positives = 107/417 (25%), Gaps = 59/417 (14%)

Query: 89  IDAHGY-LKEISEELPKTIGNYAFKMIGMRLCDVSD-----ILHIDPNNHIGDLLKRQNT 142
           IDA  Y +   ++   ++IG+      G    +++         +D    +  +LK    
Sbjct: 322 IDAETYEIILANKAAYRSIGST-----GRTCYELTHHANHPCDGLDHPCPLQTVLKTGAA 376

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG----K 198
              +      + +     +++   P+ +   +      + +        D          
Sbjct: 377 TSVE--HIHFDQSGEKRYVEVHGYPVRNSEGKVIQMIEYSL--DITEKKDAERTLINLNS 432

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP----------------HLRMKNKVSS 242
            L++K +   E  +      K   +                          LR+     S
Sbjct: 433 ILEQKVAERTEKLEAEVKNRKNAEEKLIANEKYFRQLIANISDIIIIADETLRITYVSPS 492

Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSL---PEQEDFHTINLNQYTKKQYFGTLQN----- 294
           + +      + L  +    L  E   +      E+    +  Q   +             
Sbjct: 493 IEQICGFPPEYLLGKPLEYLVQESDGVIFDHWIENVLRRHGEQRVAELRILKRSGAYLNA 552

Query: 295 --------NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYAN 345
                    +      + +    ++    +E        +++ P    +    GN+ + N
Sbjct: 553 EVLAKNMLENNVINGVVVNIRDVTVRKKAEEELKKLALVMEQNPNSIVITDIDGNIEFVN 612

Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405
           P+F  +T Y   + +     +         ++    + +    +              + 
Sbjct: 613 PAFEKITGYSLEEALGKNPNV----LKTDHTEPAVFEELWKTVTKGEVWNGE---FVNKK 665

Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
                     I     N   E +   G++    + +  + K E         L   S
Sbjct: 666 KNGELYIEHAIIAPIMNDRGEIVNYLGMKENITELKQARAKAEESNRAKSMFLANMS 722



 Score = 70.4 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/313 (10%), Positives = 93/313 (29%), Gaps = 32/313 (10%)

Query: 290 GTLQNNSKESFEYLSHRNHPSLSAYFDEGENL--TPETVDKCPIPFFVYSHG--NLFYAN 345
            +L+   K+    L  +         +  E      + ++    PF+V       +  AN
Sbjct: 274 SSLEETVKKRTGELETQVRIREEQERESFERAQFLTDVIESLAHPFYVIDAETYEIILAN 333

Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS---------DNNAIKPVMLYRSDRTCIAA 396
            +             E+    +   D                      + +         
Sbjct: 334 KAAYRSIGSTGRTCYELTHHANHPCDGLDHPCPLQTVLKTGAATSVEHIHFDQSGEKRYV 393

Query: 397 SARLHTIQ-WNRENSLAMTFIPFEKANQFPENM--------------PQNGIEPEDVDTR 441
               + ++    +    + +       +  E                    +E E  + +
Sbjct: 394 EVHGYPVRNSEGKVIQMIEYSLDITEKKDAERTLINLNSILEQKVAERTEKLEAEVKNRK 453

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
             + K+         ++   SD I I +    I   + ++ ++ G+P E +L KP    +
Sbjct: 454 NAEEKLIANEKYFRQLIANISDIIIIADETLRITYVSPSIEQICGFPPEYLLGKPLEYLV 513

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI---IIKKLPFSSCYSLTM 558
           +++   + +H++  +L     Q +        +    L+  +    + +    +   + +
Sbjct: 514 QESDGVIFDHWIENVLRRHGEQRVA-ELRILKRSGAYLNAEVLAKNMLENNVINGVVVNI 572

Query: 559 HDISEWKQEKNKL 571
            D++  K+ + +L
Sbjct: 573 RDVTVRKKAEEEL 585



 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/162 (13%), Positives = 54/162 (33%), Gaps = 4/162 (2%)

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGY 487
               +E +       +R+       L  ++E+ +    +I+ E   I+  N+A  +  G 
Sbjct: 283 RTGELETQVRIREEQERESFERAQFLTDVIESLAHPFYVIDAETYEIILANKAAYRSIGS 342

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
                                    L  +L      ++E I    + E++ + +     +
Sbjct: 343 TGRTCYELT-HHANHPCDGLDHPCPLQTVLKTGAATSVEHIHFDQSGEKRYVEVHGYPVR 401

Query: 548 LPFSSCYSLT--MHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
                   +     DI+E K  +  L +   I E++ + +++
Sbjct: 402 NSEGKVIQMIEYSLDITEKKDAERTLINLNSILEQKVAERTE 443


>gi|283852698|ref|ZP_06369963.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283571876|gb|EFC19871.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 832

 Score =  353 bits (907), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 105/673 (15%), Positives = 215/673 (31%), Gaps = 82/673 (12%)

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQS---PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
            L E       V      + +             +  +       A   +     +  L 
Sbjct: 21  ALWETAGDIVVVLAPDGRLSAISDRGLAFLGRTREEALGRDWFELAIPPEDHDRGRAALA 80

Query: 263 TSEESSLPEQEDFHT----INLNQYTKKQYFGTLQNNSKESFEYLS----HRNHPSLSAY 314
                 LP               +         L   +      L       +     A 
Sbjct: 81  GIVAGRLPAHGRSDAWDLLAAPGRRRISWSHALLAPAAGGQAAVLGCGHDITDRLQSEAA 140

Query: 315 FDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
             E +       +      F+     G    AN   + L  +     +E    L+     
Sbjct: 141 LRESDAEYRSIFNAVSDAIFIQDAATGAFLEANDRAVDLFGHS----LEEFRRLAPPDLT 196

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
                 +A + +   R          +L       ++          +A  +        
Sbjct: 197 AGSPPYSADEILAKLRLAGEGRP---QLFDWLARDKSGRLFWTEVSLRAVTYKGRTRIIA 253

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL-STNRAVSKLFGYPVED 491
           +  +  + R+ +R +     +   + EA  +   +   +       + A  +L+G     
Sbjct: 254 VVRDITERRMAERALRASEKKFRQLAEAIGEVFWLTATDWKRTFYISPAYERLWGRTTRS 313

Query: 492 ILRKPFTVF--LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
           +   P +    +       +  YLT +    +   +         +  +  ++     + 
Sbjct: 314 LYEAPLSWLESVHPEDRDPVLSYLTSLAGRPVVPGVFPEYRLLRPDGTVRWVQARHFPVA 373

Query: 550 FSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESS---------------------- 583
             +         + DI++    + +L    +  E                          
Sbjct: 374 DDTGVVYRVAGIVEDITDRVLARKELEGINERLEDMVRDRTRTLNRMNEELIREVAERRE 433

Query: 584 -----------------HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
                             KS+FLA +SHEIRTP+  I+G ++++     G   +P    +
Sbjct: 434 AEAAMAVAKEAAEAASQAKSEFLANMSHEIRTPMNGILGMAQIL----GGTSLDPAQQGF 489

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
              I+ S   +L ++ND+LD SKIE+ ++ L  +P  L   ++   + + + A E  + +
Sbjct: 490 LKDIEDSATSLLTLINDILDFSKIEADRLELARDPFGLRGVLASVEAALGVLARENGLEL 549

Query: 687 RTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQII----ISTTHTSN------- 734
               A ++P +L  D   ++Q+ +N++ NAI FT  GG +I    + T            
Sbjct: 550 HVDVAPDVPDVLLGDADRLRQVLVNLVGNAIKFTRRGGVVIGVQCVETCLAQESAGPDAT 609

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
           +E++  V DTG+G+   + ++  + F Q   S   R  GTGLGL + + +V    G   +
Sbjct: 610 QELVFSVSDTGIGIRPEDADRIFEAFTQADGSYTRRFGGTGLGLAITRRLVGLMGGVIGL 669

Query: 795 FSTPAKGTLIEII 807
            S P +G++    
Sbjct: 670 ESEPGQGSVFTFT 682



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 41/422 (9%), Positives = 116/422 (27%), Gaps = 28/422 (6%)

Query: 52  SNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAF 111
            N T    ++ +    L +            V         G L  IS+     +G    
Sbjct: 2   QNATAPTDQTPTEAGTLCA--ALWETAGDIVVVLA----PDGRLSAISDRGLAFLGRTRE 55

Query: 112 KMIGMRLCDVSDI--LHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIY 169
           + +G    +++     H      +  ++  +   +G++  W +        I  +   + 
Sbjct: 56  EALGRDWFELAIPPEDHDRGRAALAGIVAGRLPAHGRSDAWDLLAAPGRRRISWSHALLA 115

Query: 170 SRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKE--------- 220
                 +   G G  H         A  +  D ++  +         ++           
Sbjct: 116 PAAGGQAAVLGCG--HDITDRLQSEAALRESDAEYRSIFNAVSDAIFIQDAATGAFLEAN 173

Query: 221 --KYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTI 278
               D+F              +++ +  Y+  + + K         +      ++    +
Sbjct: 174 DRAVDLFGHSLEEFRRLAPPDLTAGSPPYSADEILAKLRLAGEGRPQLFDWLARDKSGRL 233

Query: 279 NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH 338
              + + +    T +  ++                     E    +  +     F++ + 
Sbjct: 234 FWTEVSLRAV--TYKGRTRIIAVVRDITERRMAERALRASEKKFRQLAEAIGEVFWLTAT 291

Query: 339 G--NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA 396
                FY +P++  L    +    E        L++    D + +   +   + R  +  
Sbjct: 292 DWKRTFYISPAYERLWGRTTRSLYEAPLSW---LESVHPEDRDPVLSYLTSLAGRPVVPG 348

Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
               + +         +    F  A+         GI  +  D  + ++++E    +L  
Sbjct: 349 VFPEYRLLRPDGTVRWVQARHFPVADDTGVVYRVAGIVEDITDRVLARKELEGINERLED 408

Query: 457 IL 458
           ++
Sbjct: 409 MV 410



 Score = 54.6 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/140 (12%), Positives = 43/140 (30%), Gaps = 5/140 (3%)

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF-LEQNTPSVMNHYL 513
            ++ E   D + ++  +G + + +       G   E+ L + +    +           L
Sbjct: 20  AALWETAGDIVVVLAPDGRLSAISDRGLAFLGRTREEALGRDWFELAIPPEDHDRGRAAL 79

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL-PFSSCYSLTM---HDISEWKQEKN 569
             I++  L                   +      L P +   +  +   HDI++  Q + 
Sbjct: 80  AGIVAGRLPAHGRSDAWDLLAAPGRRRISWSHALLAPAAGGQAAVLGCGHDITDRLQSEA 139

Query: 570 KLSHAKKIAEKESSHKSDFL 589
            L  +        +  SD +
Sbjct: 140 ALRESDAEYRSIFNAVSDAI 159


>gi|294495506|ref|YP_003541999.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
 gi|292666505|gb|ADE36354.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
          Length = 962

 Score =  353 bits (907), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 133/744 (17%), Positives = 281/744 (37%), Gaps = 49/744 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCD-VSDILHIDPNNHIGDLLKRQNTWYGKT 147
           +D  G +   + +  + +G    +++G    D      +      I + +        + 
Sbjct: 247 LDPEGNVLFSNLKTSEILGYPEEEIVGKNWVDNFIPSRNKAHVRQIINEIVSGKEEIVQG 306

Query: 148 TLWPIEG-TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
              P+   +N    I+     + +   E +G    GI          +   +    KF +
Sbjct: 307 YQNPVLNISNKEFVIEWHNSVLRNDKGEITGIIASGI--DVTERKLAQKEIR----KFKN 360

Query: 207 LHEIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSSLTEYYAHKDDVLKTE-KYPLLT 263
           + +     S +     +I          H     +V        H  + L+   ++    
Sbjct: 361 IVDRANYGSLLLDLDGNITYINDYFANIHGYTPEEVIGKDISIFHNKNQLEETYRFRNKL 420

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS-----HRNHPSLSAYFDEG 318
            E+S    +E +HT              +  + ++S  Y++       +  +      E 
Sbjct: 421 IEDSDYKHREIWHTHKDGTEFPMLMEAVVHEDKQDSDRYIAATGIDITDMKNTENALRES 480

Query: 319 ENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
           E      ++K P   FV    G+    N      T Y S +++     +   L  P   +
Sbjct: 481 EAKFRNYINKAPDGVFVADENGDYVEVNTEACETTGY-SKEELLSMNLID--LIPPDNHE 537

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
                   L +            + ++ +               +    +    G   + 
Sbjct: 538 KVIEGFETLVKK----GYVDVEFNFLRKDGSRRWW------RVTSTKLSDTRYLGFTKDT 587

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
            ++++ +  +    + L SI+E+  DG++I++ +  I+  N A++K +      +  K  
Sbjct: 588 TESKLMEEALIKNKLFLNSIIESIKDGVSILDADMNIVRVNDAMNKWYEKNTP-LEGKKC 646

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CY 554
                          +   +     +    +      E +   L     K   +      
Sbjct: 647 YEAYHDRDSPCTPCPVIRCMETGETER-NIVQGLPDPEPQWFELLAYPLKDSTTGEITGT 705

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
              + DI++ K+ + +L+ A+    + S   S+  A + HE+RT L  IIGF++++ N  
Sbjct: 706 VEFVKDITDHKRAEAELAEARLHGREVSKTNSELKANLGHELRTSLGNIIGFTQMLHNNI 765

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
           +G L NP+  ++   I +S   ++++++D+L+IS +E+GKM L+ E  S+ E ++E +  
Sbjct: 766 YGRL-NPKQQKHIQGIQKSAEHLMNLIDDILEISDVEAGKMELNIEMFSIIELLNEILIF 824

Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
           ++ +A ++ + I T     IP I  D   +KQ   N++ NAIHFTP G  + IS  ++ +
Sbjct: 825 LKPFAEDRNVEITTDIPEYIPEINVDKAKIKQAIYNLIINAIHFTPEGRNVHISMEYS-S 883

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPF---GQ---IPNSQQIRGEGTGLGLPLAKAMVDAN 788
            ++   V D+G+G++  +LE+  +PF        +            LGL LAK  ++ +
Sbjct: 884 YDLKFEVNDSGIGISPTQLEELFRPFKEIYSESGVKPPDSN------LGLSLAKEYIELH 937

Query: 789 MGKFYIFSTPAKGTLIEIIFPLYD 812
            G+  + S    G       P+  
Sbjct: 938 GGEIEVESESGAGNSFVFTIPIQP 961



 Score = 75.4 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 40/276 (14%), Positives = 86/276 (31%), Gaps = 11/276 (3%)

Query: 314 YFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFL-LLTKYKSVDDIEIAGGLSTLLD 371
             DE      + +D  P P F    +G     N  F   +        +           
Sbjct: 95  SLDERAKFLKKLIDTIPGPIFYKDINGVYKGFNKIFCKEILGIPCEKAVNHTLFELAEQI 154

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
            P+L++      + L +  R           ++     +    F      ++        
Sbjct: 155 PPELAEIYHEHDMELIKKQRKQ----VYETKVRCADGENKEFRFYKATYNDRDGNVAGII 210

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
           G   +  D +  ++++  E  +    L+A      +++ EG +L +N   S++ GYP E+
Sbjct: 211 GSMLDISDLKAKEKELREEKKKTGECLDAAEVIFVVLDPEGNVLFSNLKTSEILGYPEEE 270

Query: 492 ILRKPFTVFLEQNTPSVM-NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
           I+ K +      +         + EI+S                  K   +      L  
Sbjct: 271 IVGKNWVDNFIPSRNKAHVRQIINEIVSGKEEIVQGYQNPVLNISNKEFVIEWHNSVLRN 330

Query: 551 SS----CYSLTMHDISEWKQEKNKLSHAKKIAEKES 582
                     +  D++E K  + ++   K I ++ +
Sbjct: 331 DKGEITGIIASGIDVTERKLAQKEIRKFKNIVDRAN 366



 Score = 58.1 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 29/247 (11%), Positives = 61/247 (24%), Gaps = 16/247 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            +  D +G   E++ E  +T G    +++ M L D+    + +      + L ++     
Sbjct: 495 VFVADENGDYVEVNTEACETTGYSKEELLSMNLIDLIPPDNHEKVIEGFETLVKKGYVDV 554

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +      +G+  +  +          + + S  R  G                +     +
Sbjct: 555 EFNFLRKDGSRRWWRVT---------STKLSDTRYLGFTKDTTESKLMEEALIKNKLFLN 605

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT-------EK 258
            + E  K   S+     +I            KN      + Y    D             
Sbjct: 606 SIIESIKDGVSILDADMNIVRVNDAMNKWYEKNTPLEGKKCYEAYHDRDSPCTPCPVIRC 665

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
                +E + +    D                T    +          +H    A   E 
Sbjct: 666 METGETERNIVQGLPDPEPQWFELLAYPLKDSTTGEITGTVEFVKDITDHKRAEAELAEA 725

Query: 319 ENLTPET 325
                E 
Sbjct: 726 RLHGREV 732


>gi|237799882|ref|ZP_04588343.1| PAS protein [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331022737|gb|EGI02794.1| PAS protein [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 576

 Score =  353 bits (907), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 121/527 (22%), Positives = 211/527 (40%), Gaps = 46/527 (8%)

Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS-----TLLDAPKLSDNNAIKPVM-- 385
                HG +   N     +  Y S D ++            L+       +    P+   
Sbjct: 48  IATDEHGVIQIFNVGAERMLGYHSEDVVDKITPADISDPAELIIRAAALSHELNTPITPG 107

Query: 386 ---LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
              L       I     L  I+ +     AM        +     +    I  ++   + 
Sbjct: 108 FEALVFKASRGIEDIYELTYIRKDGSRLSAM-VSVTSLRDSAETIIGYLLIGTDNTARKQ 166

Query: 443 NK-------RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
            +       +++  +     S++E+  D + + + +GII   N+ +  L G   ++++  
Sbjct: 167 EEETQALLDQRLRDQQFYTRSLIESNIDALMMTDPQGIISDVNKQMMALTGRTRDELIGA 226

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--C 553
           P   F     P+  +  +  +LS       E         E ++S               
Sbjct: 227 PCKNFF--TDPASADAAIKRVLSEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRKLKG 284

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
                 D++E K+ +  L       E  S  KS+FLA +SHE+RTPL A+IGFSE +K+ 
Sbjct: 285 VFAAARDVTERKRFERTLEEKNIELEHASHMKSEFLATMSHELRTPLNAVIGFSEALKDG 344

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
             G + +     Y   I  SG  +L ++ND+LD+SK+E+G M L  EPV LDE +S ++ 
Sbjct: 345 MVGDMTDD-QRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELEPVDLDELLSNSLL 403

Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
           +V+  A  +RI ++     +   +  D R  KQI  N+L+NA+ F+  GG +I++     
Sbjct: 404 IVREQAALQRIQLKLETDADFGLLELDRRKTKQIVYNLLANAVKFSQPGGWVILAVRQVP 463

Query: 734 NEE-----------------------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
             +                       + L V DTG+G+   ++ K  K F QI +    +
Sbjct: 464 RSQAGVLEGDWPTYGFELPSSDNEHFLELSVSDTGIGIAQSDMNKLFKAFSQIDSGLARK 523

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
            EGTGLGL + K + + + G   + S    GT   +  P+   +   
Sbjct: 524 FEGTGLGLAMVKQLTELHGGCVAVASVKDLGTRFVVWLPIRPPASEE 570



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/238 (11%), Positives = 64/238 (26%), Gaps = 7/238 (2%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            D  G + ++++++    G    ++IG    +         +  I  +L        + T
Sbjct: 199 TDPQGIISDVNKQMMALTGRTRDELIGAPCKNFFTDP-ASADAAIKRVLSEHKVSDYELT 257

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           +   +GT     +   A   + R+R+  G   F                +  + +  H  
Sbjct: 258 VRAYDGTETV--VSYNAATFHDRDRKLKGV--FAAARDVTERKRFERTLEEKNIELEHAS 313

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK-VSSLTEYYAHKDDVLKTEKYPLLTSEES 267
            +K    +    +              +K+  V  +T+        +      LL+    
Sbjct: 314 HMKSEFLATMSHELRTPLNAVIGFSEALKDGMVGDMTDDQRRYIGDIFNSGQHLLSLIND 373

Query: 268 SLP-EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
            L   + +   + L             +      +    R    L    D G      
Sbjct: 374 ILDLSKVEAGMMTLELEPVDLDELLSNSLLIVREQAALQRIQLKLETDADFGLLELDR 431



 Score = 45.0 bits (105), Expect = 0.057,   Method: Composition-based stats.
 Identities = 24/265 (9%), Positives = 65/265 (24%), Gaps = 26/265 (9%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGM-RLCDVSDILHI------------DPNNHIGD 135
            D HG ++  +    + +G ++  ++      D+SD   +             P     +
Sbjct: 50  TDEHGVIQIFNVGAERMLGYHSEDVVDKITPADISDPAELIIRAAALSHELNTPITPGFE 109

Query: 136 LL----KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN 191
            L     R      + T    +G+   +   ++   +        G+   G  +  R   
Sbjct: 110 ALVFKASRGIEDIYELTYIRKDGS--RLSAMVSVTSLRDSAETIIGYLLIGTDNTARKQE 167

Query: 192 DP-----RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSSLT 244
           +          +        L E       +   +  I            R ++++    
Sbjct: 168 EETQALLDQRLRDQQFYTRSLIESNIDALMMTDPQGIISDVNKQMMALTGRTRDELIGAP 227

Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
                 D          + SE      +      +  +        T  +  ++     +
Sbjct: 228 CKNFFTDPASADAAIKRVLSEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRKLKGVFA 287

Query: 305 HRNHPSLSAYFDEGENLTPETVDKC 329
                +    F+         ++  
Sbjct: 288 AARDVTERKRFERTLEEKNIELEHA 312


>gi|117923777|ref|YP_864394.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117607533|gb|ABK42988.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1314

 Score =  353 bits (907), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 110/545 (20%), Positives = 205/545 (37%), Gaps = 29/545 (5%)

Query: 286 KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFY 343
           ++    L+  ++    +L+ +       + +E       T+D       +          
Sbjct: 286 RRDEALLELLAQWVGTHLAQQQRMQALQWSNERLARFRATLDHLDDMIALADPRTLRFVD 345

Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403
            N   +  T       +         L  P+           L       +     L   
Sbjct: 346 VNRGMVESTGLSLDGLLSKRL---ADLTTPQSQAKVNRIMNRLVVGLDRMLRFEVTLQ-- 400

Query: 404 QWNRE-NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
             N             E     P  +    +  +  + +  +  + +   +L   LE ++
Sbjct: 401 HTNGSCIETDALVQWVELEAGKPVVVH---MLRDATERKRAETALRVSEERLTFALEGSN 457

Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRK--PFTVFLEQNTPSVMNHYLTEILSLD 520
           DG+   N     L  +  +  + G+    +          + +     +   L  I    
Sbjct: 458 DGLWDWNIAEDNLHCSPRLEAMLGFRRGSLTGSMARLKSMIVEQERPGVEALL-RIHLDG 516

Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-----CYSLTMHDISEWKQEKNKLSHAK 575
                E     ++   +LL +    K +  +S         T  DI+  K  +  L  AK
Sbjct: 517 HVDLYEAEYRINSASGRLLWILDRGKVVQRNSKGQPIRAVGTFTDITARKDMEAALHDAK 576

Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
             AE  S  KS FLA +SHEIRTP+ AI+G S +   Q        R  ++   I+ SG+
Sbjct: 577 VEAESASRAKSRFLANMSHEIRTPMNAILGLSSLALEQA----KEARQRDFLEKINHSGH 632

Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695
            ++ ++ND+LD+SKIE+ +M+L  +P  LDE + +  + V      K + +    A+  P
Sbjct: 633 FLMGLLNDILDLSKIEAERMDLESQPFRLDELLKQLAANVLPAMRNKAVEVHFFIASGTP 692

Query: 696 -RILADLRSVKQIALNILSNAIHFTPSGG-QIIIS----TTHTSNEEVILRVRDTGVGMT 749
             ++ D   + Q+  N+LSNA+ FT  G  +I ++       T +      V+D+G+G+ 
Sbjct: 693 LALVGDALRLGQVLHNLLSNAMKFTHEGEVRITLTAEPYVQLTDHYLFTFEVKDSGIGIP 752

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
                K  + F Q  +S   +  G+GLGL + + +++   GK  + S+  +G+      P
Sbjct: 753 AEVQPKLFESFIQADSSTTRQYGGSGLGLAICRRLMEMMHGKITLQSSLGQGSTFTCRLP 812

Query: 810 LYDTS 814
           L   S
Sbjct: 813 LQIQS 817



 Score = 41.2 bits (95), Expect = 0.76,   Method: Composition-based stats.
 Identities = 26/303 (8%), Positives = 73/303 (24%), Gaps = 29/303 (9%)

Query: 94  YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ--NTWYGKTTLWP 151
              +++  + ++ G     ++  RL D++        N I + L          + TL  
Sbjct: 342 RFVDVNRGMVESTGLSLDGLLSKRLADLTTPQSQAKVNRIMNRLVVGLDRMLRFEVTLQH 401

Query: 152 IEGT-----NLYVPIDL-AALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
             G+      L   ++L A  P+              ++             +  +++ +
Sbjct: 402 TNGSCIETDALVQWVELEAGKPV-----------VVHMLRDATERKRAETALRVSEERLT 450

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
              E             D      P     +  +  SLT   A    ++  ++ P + + 
Sbjct: 451 FALEGSNDGLWDWNIAEDNLHCS-PRLEAMLGFRRGSLTGSMARLKSMIVEQERPGVEAL 509

Query: 266 ES--------SLPEQEDFHTINLNQYTKKQYFGTLQNNS-KESFEYLSHRNHPSLSAYFD 316
                         +   ++ +            +Q NS  +    +      +     +
Sbjct: 510 LRIHLDGHVDLYEAEYRINSASGRLLWILDRGKVVQRNSKGQPIRAVGTFTDITARKDME 569

Query: 317 EGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
              +      +        +              +    S+   +               
Sbjct: 570 AALHDAKVEAESASRAKSRFLANMSHEIRTPMNAILGLSSLALEQAKEARQRDFLEKINH 629

Query: 377 DNN 379
             +
Sbjct: 630 SGH 632


>gi|209809192|ref|YP_002264730.1| response regulator, histidine kinase [Aliivibrio salmonicida
           LFI1238]
 gi|208010754|emb|CAQ81147.1| response regulator, histidine kinase [Aliivibrio salmonicida
           LFI1238]
          Length = 943

 Score =  353 bits (907), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 99/379 (26%), Positives = 178/379 (46%), Gaps = 15/379 (3%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +      E E  +L  + E   D I I +  G++   N++ S L G+ + ++L K     
Sbjct: 264 KRELVNSEKEKSKLALVAEHAHDAILITDNNGMLTWANQSFSTLSGFQLNEVLGKKPGDL 323

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSL 556
           L+    S  +       ++     +E   +   K+     + + I     S      +  
Sbjct: 324 LQGENTSK-DDIARISAAIKKGAAIESELINYHKDGSEYWIGMSITPTFNSDGSVEQFIA 382

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
              DI++ K  +  L +A + AE  +  KS FLA +SHE+RTPL  I+G +++I++    
Sbjct: 383 VERDITKRKALEIDLFNAAEQAEVSNKAKSTFLATMSHELRTPLNGILGMAQIIESN--- 439

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
            + +P   +  N +  SG+ +L ++ND+LD SKIE  K+ L   P    + +S   +   
Sbjct: 440 -IKDPEQHKQINVLLESGDHLLSLLNDILDFSKIEQNKLELDNLPFDFKDVISPIANTYI 498

Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT--- 732
               +K + +      N   +   D   ++QI  N++SNA+ FT  G  I ++ +HT   
Sbjct: 499 PICEDKGLELIIHDQINAGAVFNGDKPRIRQIIFNLISNAVKFTHKGS-ITLTFSHTLTA 557

Query: 733 -SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
            S + +++++ D+G+G+    L+    PF Q  ++   +  GTGLGL + K +VDA  G 
Sbjct: 558 KSKQGLLIKIEDSGIGIREERLDYIFDPFIQAESATTRQYGGTGLGLAIVKQLVDAMQGY 617

Query: 792 FYIFSTPAKGTLIEIIFPL 810
             + S   +GT   I+ PL
Sbjct: 618 ISVKSVEGEGTGFTIMLPL 636


>gi|323138439|ref|ZP_08073508.1| PAS/PAC sensor signal transduction histidine kinase [Methylocystis
           sp. ATCC 49242]
 gi|322396235|gb|EFX98767.1| PAS/PAC sensor signal transduction histidine kinase [Methylocystis
           sp. ATCC 49242]
          Length = 742

 Score =  353 bits (907), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 123/742 (16%), Positives = 238/742 (32%), Gaps = 41/742 (5%)

Query: 90  DAHGYLKEISEELPKTIGNYAF-KMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           D       +S              M+G+   ++   +           L  +     +  
Sbjct: 21  DREMRYLAMSPRW--LSEYPVDGPMLGLSHYELFPEIPERWKEAHRRGLAGETLSAAEDC 78

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +G    V +     P +  +    G   F                +  +++  +  
Sbjct: 79  FVRADGG--VVWMSWQLRPWFEADGTIGGIVIFA--EDVTPRKRAEEALRLSEERHRYAM 134

Query: 209 EIKKGHSSVEKEKYDIFSQQSP-------PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
           +  +        K                       + V    E     D      +   
Sbjct: 135 QATREGLWDWNIKTGEAFISPYYCAMLGYEESDFAPDVVRHWIELLHPDDRDATLARVDE 194

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN-----SKESFEYLSHRNHPSLSAYFD 316
             SE  +   +    T +            ++ +     S+    ++         A   
Sbjct: 195 WLSESGAYSCEFRLRTKDGKYRWILSRGKVVERDEAGAPSRAVGAHVDITERKQAEAALI 254

Query: 317 EGENLTPETVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
           E E+   +  D  P   ++        Y N ++L  T       +   G  + +      
Sbjct: 255 ESEHRFQQIADHTPALIWMSGAEKGCTYFNRTWLNFTGRALEQQL-GDGWTACVHPNDLD 313

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
                       R            + ++ +      +  +   +     E +   G   
Sbjct: 314 RCLETYGSAFDARK-----PFEME-YRLRRHDGEYRWVLDVGVPRFTPEGEFLGYIGSGV 367

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV-EDILR 494
           +  + R  +  +     +L     +   GI   +        N     L+G P    +  
Sbjct: 368 DVTERRNAEEALRKREERLSLAQSSAHIGIWDWDLGANETFLNNEYYDLYGLPRGASLTY 427

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE-KITLGSTKEEKLLSLRIIIKKLPFSSC 553
             F   +       ++  +   LS   R   + +I      E + ++ + I+        
Sbjct: 428 DDFLSRVHPEDRQRVDSEMQTALSGGGRLDFQCRIVRADDCETRWIASKGIVFFNADGHP 487

Query: 554 YSLT--MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI- 610
           +     ++DI+E K+ + +L             K +FLA ++HE+R PL AI     ++ 
Sbjct: 488 FRAMGAVYDITELKKIEEELLSV-------DRRKDEFLATLAHELRNPLGAISNSVNLLN 540

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
                      +       I R  N +  IV+DLL+I++I+ GK+ L  E V L E +S+
Sbjct: 541 ILTSETSSAEEKKRASLARIKRQVNHLKRIVDDLLEITRIKHGKIELKKERVELGEILSQ 600

Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
           A+ L Q    EK   +     +    +  D   + QI  N+L+NA+ FT +GG+I I+  
Sbjct: 601 AVDLCQPLVQEKGHQLTIELPSRPLEVDGDPVRLVQIFGNLLNNAVKFTDAGGRIDIAAA 660

Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
           H   +E I+RVRDTG G+    L      F Q+    +I   G G+GL L++ ++  + G
Sbjct: 661 H-GEKEAIVRVRDTGAGLPPETLGSIFDMFAQVKTGSRIASGGIGVGLALSRGLILLHGG 719

Query: 791 KFYIFS-TPAKGTLIEIIFPLY 811
           +    S  P  G+   +  PL 
Sbjct: 720 RIDAHSDGPGHGSEFVVRLPLA 741



 Score = 67.7 bits (164), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 35/290 (12%), Positives = 71/290 (24%), Gaps = 10/290 (3%)

Query: 41  KENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISE 100
           ++     S       D  +   +    ++SE+ F            W   A       + 
Sbjct: 227 RDEAGAPSRAVGAHVDITERKQAEAALIESEHRFQQIADHTPA-LIWMSGAEKGCTYFNR 285

Query: 101 ELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPIEGTNLYV 159
                 G    + +G           +D      G     +  +  +  L   +G   Y 
Sbjct: 286 TWLNFTGRALEQQLGDGWTACVHPNDLDRCLETYGSAFDARKPFEMEYRLRRHDGE--YR 343

Query: 160 PIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEK 219
            +    +P ++   EF G+ G G+  V    N   AL KR ++          G    + 
Sbjct: 344 WVLDVGVPRFTPEGEFLGYIGSGV-DVTERRNAEEALRKREERLSLAQSSAHIGIWDWDL 402

Query: 220 EKYDIFSQQSPPPHLRMKNKVSS-----LTEYYAHKDDVLKTEKYPLLTSEESSLPEQED 274
              + F          +    S      L+  +      + +E    L+       +   
Sbjct: 403 GANETFLNNEYYDLYGLPRGASLTYDDFLSRVHPEDRQRVDSEMQTALSGGGRLDFQCRI 462

Query: 275 FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
               +              N     F  +      +     +E       
Sbjct: 463 VRADDCETRWIASKGIVFFNADGHPFRAMGAVYDITELKKIEEELLSVDR 512



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/140 (10%), Positives = 41/140 (29%), Gaps = 8/140 (5%)

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
             L   +E T    A+ +RE   L+ +      +      +    +   L    P     
Sbjct: 4   ADLRLFIEQTPIAAAMFDREMRYLAMSPRWLSEYPVDGPMLGLSHYE--LFPEIPERWKE 61

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQE 567
                L+ +     E   +    +  ++ +   ++    +        +   D++  K+ 
Sbjct: 62  AHRRGLAGETLSAAEDCFV--RADGGVVWMSWQLRPWFEADGTIGGIVIFAEDVTPRKRA 119

Query: 568 KNKLSHAKKIAEKESSHKSD 587
           +  L  +++          +
Sbjct: 120 EEALRLSEERHRYAMQATRE 139


>gi|239787450|emb|CAX83922.1| Sensor protein [uncultured bacterium]
          Length = 1574

 Score =  353 bits (907), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 103/636 (16%), Positives = 229/636 (36%), Gaps = 31/636 (4%)

Query: 184  VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYD----IFSQQSPPPHLRMKNK 239
            +             +  +++F  L +      ++ +  +D    I  + +        + 
Sbjct: 439  IRDRVSKGAMEEAMRVSERRFRALFDTMSSGVAIYEPFHDGEDFIIKEFNRAGRRISASG 498

Query: 240  VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
               L      +      +       +      +  +H ++  Q  + + +        ++
Sbjct: 499  ARDLIGLKITEAFPGIRDFGLFEVFQRVHRTGESAYHPVSWYQDERHRGWLDNHVYRLDT 558

Query: 300  FEYLSHRNHPSLSAYFDEGENLTPETVDKCPI-PFFVYSHGNLFYANPSFLLLTKYKSVD 358
             E ++  +  +     +E   L   +++       +    G + + NPS      Y S++
Sbjct: 559  GEIVAIYDDLTEKRLAEEQLRLAQASIENSTDWVVWSKPDGGILWMNPSGREHLGY-SLE 617

Query: 359  DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
            D+            P        +     +++R+       L        +         
Sbjct: 618  DLRGMTISD---LNPGHPREMWAEHWAALKANRSL------LFEAGVMGRDGALQPVEVS 668

Query: 419  EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
                +F        I     + +  +  +     +  +I+ A+ D +A I+   I  + N
Sbjct: 669  ANYLEFENREYNVAIVRHIGERKQAEESLR----RYAAIVSASRDHMAFIDTGYIYRAVN 724

Query: 479  RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
            +      G P+E  +         +     +   +   L    R   +         ++ 
Sbjct: 725  QTYLDCHGLPIEAFVGHSVAALFGEEFFGRIKALMDHCLK-GERINYQGWIDFPVAGKRW 783

Query: 539  LSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
            + +                +   D +E K  +++L  +++ A + +  K +FLA +SHEI
Sbjct: 784  MDVSYFPHHREDGEVTGLVVVSRDATERKFMEDELRASEEQARQANRAKGEFLANMSHEI 843

Query: 597  RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
            RTP+ AI+G + +            +   Y   I  + + +L ++ND+LD S+I++GK+ 
Sbjct: 844  RTPMNAIVGMAYLAMQTGLTS----QQRGYLEKIQGASHALLRLINDILDFSRIDAGKLE 899

Query: 657  LHFEPVSLDEAVSEAISLVQLYANEKR-ILIRTSFANNIPR-ILADLRSVKQIALNILSN 714
            +   P  LD+ +      +      K  + +      ++PR +  D   + Q+  N+  N
Sbjct: 900  MENLPFELDQVLGGVFDGLLPKLARKGGVELLLDCPGDLPRRLRGDGVRLGQVLTNLCDN 959

Query: 715  AIHFTPSGGQ-IIISTTHTSNEEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
            AI FT +G   + I       E++     V D+G+G+   ++E+ ++PF Q  +S   R 
Sbjct: 960  AIKFTEAGEVAVSIRLEAMDEEQLTYAFVVTDSGIGIDPEQIERILQPFQQADSSTTRRY 1019

Query: 772  EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
             GTGLGL + + +V    G F + S P +G+     
Sbjct: 1020 GGTGLGLAICRNLVTMMGGVFQVDSAPGRGSRFAFT 1055



 Score =  131 bits (329), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 57/573 (9%), Positives = 145/573 (25%), Gaps = 94/573 (16%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKRQNTWYGKT 147
            +  G ++ ++    +  G  A ++IG     + SD         +  +L  +  W G+ 
Sbjct: 164 TNPGGVIEYVNSSFERLTGYSAQEIIGANPRLLKSDQQDPSVRRDMWHVLVAEGRWRGEL 223

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                +G+  +  + + A  +   +     +    +     +      L  + ++     
Sbjct: 224 LNRKKDGSQFWASVSIGA--VRDGSGAVRAY--IAVEEDVTLMRQAERLLIQANRALRTR 279

Query: 208 HEIKKGHSSVEKEKYDIF------------------SQQSPPPHLRMKNKVSSLTEYYAH 249
           +      ++ E ++  +                       P P  R+     +  +    
Sbjct: 280 YRFAGILAAAEDDEKKVLTDLCEVVVTETGYRMAWVGFADPGPERRVIPVAKAGHDEGYL 339

Query: 250 KDDVLKTEKY-------------------------PLLTSEESSLPEQEDFHTINLNQYT 284
               +                              P       +  ++     I L    
Sbjct: 340 DGISISWSDASGGHGPVGRAIRSGLPCVVHDIAGDPDFAPWRDAALKRNYASCIALPVKV 399

Query: 285 KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG----------------------ENLT 322
            +   G L   S E  ++ +H            G                      E   
Sbjct: 400 ARATVGALAIYSVERRDFDAHEVELLNELAIQMGHAIQQIRDRVSKGAMEEAMRVSERRF 459

Query: 323 PETVDKCPIPFFVYSHGN------LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
               D       +Y   +      +   N +   ++   + D +            P + 
Sbjct: 460 RALFDTMSSGVAIYEPFHDGEDFIIKEFNRAGRRISASGARD-LIGLKITEAF---PGIR 515

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           D    +               +  H + W ++                 E      I  +
Sbjct: 516 DFGLFEVFQRVHRTG-----ESAYHPVSWYQDERHRGWLDNHVYRLDTGE---IVAIYDD 567

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             + R+ + ++ +      + +E ++D +     +G IL  N +  +  GY +ED+    
Sbjct: 568 LTEKRLAEEQLRLA----QASIENSTDWVVWSKPDGGILWMNPSGREHLGYSLEDLRGMT 623

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556
            +     +   +   +   + +       E   +G     + + +     +         
Sbjct: 624 ISDLNPGHPREMWAEHWAALKANR-SLLFEAGVMGRDGALQPVEVSANYLEFENREYNVA 682

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
            +  I E KQ +  L          S     F+
Sbjct: 683 IVRHIGERKQAEESLRRY-AAIVSASRDHMAFI 714



 Score = 83.9 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 53/160 (33%), Gaps = 13/160 (8%)

Query: 441 RINKRKMEIEV---MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
           R     ++ +     +L   LE +   + I N  G+I   N +  +L GY  ++I+    
Sbjct: 134 RRTHADLQSQSFKLHKLSVALEHSPGAVVITNPGGVIEYVNSSFERLTGYSAQEIIGANP 193

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---- 553
            +         +   +  +L  + R       L   K+       + I  +   S     
Sbjct: 194 RLLKSDQQDPSVRRDMWHVLVAEGRWRG--ELLNRKKDGSQFWASVSIGAVRDGSGAVRA 251

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
           Y     D++  +Q +  L      A +    +  F   ++
Sbjct: 252 YIAVEEDVTLMRQAERLLI----QANRALRTRYRFAGILA 287



 Score = 54.3 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 26/363 (7%), Positives = 83/363 (22%), Gaps = 20/363 (5%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEG 154
           +KE +    +   + A  +IG+++ +    +       +   + R          W  + 
Sbjct: 484 IKEFNRAGRRISASGARDLIGLKITEAFPGIRDFGLFEVFQRVHRTGESAYHPVSWYQDE 543

Query: 155 TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214
            +    +D           E        I              +        +       
Sbjct: 544 RH-RGWLDNHV--YRLDTGEI-----VAIYDDLTEKRLAEEQLRLAQA---SIENSTDWV 592

Query: 215 SSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQED 274
              + +   ++   S   HL    +               +        + +++     +
Sbjct: 593 VWSKPDGGILWMNPSGREHLGYSLEDLRGMTISDLNPGHPREMWAEHWAALKANRSLLFE 652

Query: 275 FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF 334
              +  +   +           +     ++   H       +E        V        
Sbjct: 653 AGVMGRDGALQPVEVSANYLEFENREYNVAIVRHIGERKQAEESLRRYAAIVSASRDHMA 712

Query: 335 VYSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393
               G +    N ++L          +     ++ L          A+    L       
Sbjct: 713 FIDTGYIYRAVNQTYLDCHGLPIEAFVGH--SVAALFGEEFFGRIKALMDHCLK---GER 767

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
           I     +       +  + +++ P  + +   E      +  +  + +  + ++     Q
Sbjct: 768 INYQGWI-DFPVAGKRWMDVSYFPHHRED--GEVTGLVVVSRDATERKFMEDELRASEEQ 824

Query: 454 LCS 456
              
Sbjct: 825 ARQ 827


>gi|56419479|ref|YP_146797.1| two-component sensor histidine kinase [Geobacillus kaustophilus
           HTA426]
 gi|261419163|ref|YP_003252845.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus
           sp. Y412MC61]
 gi|297530867|ref|YP_003672142.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus
           sp. C56-T3]
 gi|319765980|ref|YP_004131481.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus
           sp. Y412MC52]
 gi|56379321|dbj|BAD75229.1| two-component sensor histidine kinase [Geobacillus kaustophilus
           HTA426]
 gi|261375620|gb|ACX78363.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus
           sp. Y412MC61]
 gi|297254119|gb|ADI27565.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus
           sp. C56-T3]
 gi|317110846|gb|ADU93338.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus
           sp. Y412MC52]
          Length = 738

 Score =  353 bits (907), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 111/723 (15%), Positives = 239/723 (33%), Gaps = 50/723 (6%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151
           +G   +++E   K      F +IG       +++  D       +L++  ++  +  +  
Sbjct: 51  NGEFVDVNEAACKLFEMDKFSLIGHSFSSFLELVPPDILLFQRSMLQKFGSFSDELLIKL 110

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
            +G   +V   +          EF       ++                +  F  +    
Sbjct: 111 PDGKVKHVEFSMK----KDVFDEFD----LVMMRDISAHKALERERIIHEFLFRDVFNRA 162

Query: 212 KGHSSVEKEKYDIFSQQSPPP--HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
                +  E                  K K+ +L+       +        L   +E   
Sbjct: 163 VDGIVIFDEFGRFIDVNPAFSMSLNLEKGKLLNLSFQQFVARECANEFARLLAEVKEKGT 222

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFE-YLSHRNHPSLSAYFDEGENLTPETVDK 328
            + E             +   T    S              ++     + E       ++
Sbjct: 223 AKGELSLVRPDGTVKMFELTATSNVYSGFYMAIMRDVTERKNMEIKLQKSEERFRAIFEQ 282

Query: 329 CPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
                 ++   G +  ANP+          +          L D     D    +    +
Sbjct: 283 AHEAILIWDDFGYILNANPAASRTF-----ELPLNLLVRRNLFDFVDYGDEKVKRIFSEF 337

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
           R             T          + F       +   +     I     + R  +R++
Sbjct: 338 RRKGEIRDEL----TFHMPNGEDKQLEFT----MKKGAIDGYHLTIFRNVSERRKIEREL 389

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
                +  SI +   DGI + + +  I+  N  V  +F    E +L +     + +    
Sbjct: 390 RESEQKFRSIFDHAMDGILLWDAKHRIIDANPVVCGIFSVEKEALLGRMVVELVPERARR 449

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQE 567
            +N  L +           ++      + +++   +  + +P      + + D++E K+ 
Sbjct: 450 QLNKLLQQCQRTGEAS--GEVEFFDEGKGRIIEFSLKKEVIPGVG--MMMLRDVTERKEM 505

Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
           + +L  +  +         +  A ++HEIR P+TA+ GF ++++    G      Y  Y 
Sbjct: 506 ELQLRKSDTLNVV-----GELAAGIAHEIRNPMTALKGFIQLLQGSIDG-----DYSMYF 555

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
           N I      +  I+ + L ++K ++ +   +     + + + + I L+   A    + I 
Sbjct: 556 NVIMSELKRIESIITEFLVLAKPQAVQYKQN----DICKIMQDTIDLISAQAMMHNVQII 611

Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747
             F   +P +  +   +KQ+ +NIL NAI   P GG I +  T  +   V + + D G G
Sbjct: 612 ADFERGLPPVYCEPNQLKQVFINILKNAIEVMPKGGDITVRIT-RAGCYVRISITDQGCG 670

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           +   +++K  +PF         +  GTGLGL ++  +++ + GK  + S    GT   I 
Sbjct: 671 IPKDKIKKLGEPFYTT------KERGTGLGLMVSYKIIEEHQGKIEVESEVGVGTTFHIT 724

Query: 808 FPL 810
            P+
Sbjct: 725 LPI 727



 Score = 71.2 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 55/149 (36%), Gaps = 3/149 (2%)

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
              +    P+        R+++  +     I E + D I I+N+ G  +  N A  KLF 
Sbjct: 7   PREEQNASPDVRSLEEENRRLKERLNSYSIIFERSLDAIVILNKNGEFVDVNEAACKLFE 66

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
                ++   F+ FLE   P ++    + +       +     L    + K+  +   +K
Sbjct: 67  MDKFSLIGHSFSSFLELVPPDILLFQRSMLQKFG---SFSDELLIKLPDGKVKHVEFSMK 123

Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSHAK 575
           K  F     + M DIS  K  + +    +
Sbjct: 124 KDVFDEFDLVMMRDISAHKALERERIIHE 152



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/368 (8%), Positives = 97/368 (26%), Gaps = 32/368 (8%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D  G   +++     ++     K++ +           +    +   +K + T  G+ +L
Sbjct: 170 DEFGRFIDVNPAFSMSLNLEKGKLLNLSFQQFVARECANEFARLLAEVKEKGTAKGELSL 229

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGF--GIVHVNRVDNDPRALGKRLDKKFSHL 207
              +GT     +   +          + + GF   I+       +     ++ +++F  +
Sbjct: 230 VRPDGTVKMFELTATS----------NVYSGFYMAIMRDVTERKNMEIKLQKSEERFRAI 279

Query: 208 HEIK-KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS---LTEYYAHKDDVLKTEKYPLLT 263
            E   +     +   Y + +  +      +   +     L ++  + D+ +K        
Sbjct: 280 FEQAHEAILIWDDFGYILNANPAASRTFELPLNLLVRRNLFDFVDYGDEKVKRIFSEFRR 339

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
             E  + ++  FH  N      +        +      + +      +     E E    
Sbjct: 340 KGE--IRDELTFHMPNGEDKQLEFTMKKGAIDGYHLTIFRNVSERRKIERELRESEQKFR 397

Query: 324 ETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
              D       ++     +  ANP    +   +    +                     +
Sbjct: 398 SIFDHAMDGILLWDAKHRIIDANPVVCGIFSVEKEALLGRMVV---------ELVPERAR 448

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             +     +      A      ++      + F       +         +  +  + + 
Sbjct: 449 RQLNKLLQQCQRTGEASGEVEFFDEGKGRIIEFSL----KKEVIPGVGMMMLRDVTERKE 504

Query: 443 NKRKMEIE 450
            + ++   
Sbjct: 505 MELQLRKS 512


>gi|239907102|ref|YP_002953843.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239796968|dbj|BAH75957.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 959

 Score =  353 bits (907), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 116/637 (18%), Positives = 233/637 (36%), Gaps = 36/637 (5%)

Query: 190 DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP--PPHLRMKNKVSS--LTE 245
                       +++  L +           ++      +          +++    + +
Sbjct: 192 RERTGRQLIESMERYRLLVDTANEGIWAMDREHVTTYVNAAMADMIGYSPDEMIGQKVED 251

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
           Y+  +D  L +++       E  + E+  F   +  +         L+ +  E     + 
Sbjct: 252 YFFPEDMELHSQRMARRHGGEDDVYER-RFRRRDGKELWTMVSAKALKGDRNEFNGSFAM 310

Query: 306 RNHPSLSAYFD----EGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDI 360
               +L         + E L    ++  P   ++    G     N  F           I
Sbjct: 311 FTDITLRKEAQNALAQSELLLRTIINTIPDLVWLKDIDGRYLQCNKKFERFFGADESAII 370

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
                        +L+D           +    I             + S     I    
Sbjct: 371 GKD---DYAFFNKELADFFRDNDRKAIEAGGPRINEEWLTFV---EDDYSGLFETIKSPM 424

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
            +     +   GI  E    ++ +  +     +  ++  A+  GIAI ++ G+IL  N  
Sbjct: 425 YDAHGRLIGVLGIAREITARKMAEEALRESEERFKALHNASFGGIAIHDK-GVILECNLG 483

Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
           +S++FGY  ++++       + + +  V+  ++                 G  K  +   
Sbjct: 484 LSEMFGYARDELIGMDGLFLVAERSRDVVMAHIRAGYEKP------YEEYGRRKNGEEFP 537

Query: 541 LRIIIKKLPFSSCYS--LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
           +R+  + LP+       +   DI++  +    L  AK+ AE  +  KS+FLA +SHE+RT
Sbjct: 538 MRLEARNLPYKGKMVRAVEFRDITDSVKAAQALLDAKEAAESATRAKSEFLANMSHEVRT 597

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
           PL  ++G  ++++             EY     +S   +  ++ D+LDISKIE+GK+ + 
Sbjct: 598 PLNGVLGMLQLLQTTE----QTDEQKEYILGAIKSTKRLTRLLADILDISKIEAGKLQII 653

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIH 717
                        + + +  A EK +         +P +L  D   V+QI  N++ NA+ 
Sbjct: 654 EAEFFTACLQESIMEIFRPTAREKSLAFDFHVDAQMPPMLIGDETRVRQILFNLVGNALK 713

Query: 718 FTPSGGQIIISTTHTSNE-----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           FT SG  + +       +      V+  V DTG+G+++ +L+   +PF Q   S     +
Sbjct: 714 FTESGS-VQVDAMVLPAKNSGAVRVLFAVSDTGIGISDEQLKDIFEPFVQGERSYTRCYQ 772

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           G GLGL + + +V    G+  I +T   GT + +  P
Sbjct: 773 GAGLGLAIVRKLVRILGGEMVIDNTAGNGTTVYVSLP 809



 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 33/386 (8%), Positives = 96/386 (24%), Gaps = 27/386 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            W +D       ++  +   IG    +MIG ++ D      ++ ++              
Sbjct: 217 IWAMDREHVTTYVNAAMADMIGYSPDEMIGQKVEDYFFPEDMELHSQRMARRHGGEDDVY 276

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +      +G    +   ++A  +     EF+G   F +     +  + +    + +    
Sbjct: 277 ERRFRRRDG--KELWTMVSAKALKGDRNEFNG--SFAMFTDITLRKEAQNALAQSELLLR 332

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQ---SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
            +         ++                        +      + +K+           
Sbjct: 333 TIINTIPDLVWLKDIDGRYLQCNKKFERFFGADESAIIGKDDYAFFNKELADFFRDNDRK 392

Query: 263 TSEESSLPEQEDFHTINLNQYT--KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
             E       E++ T   + Y+   +     + +        L      +     +E   
Sbjct: 393 AIEAGGPRINEEWLTFVEDDYSGLFETIKSPMYDAHGRLIGVLGIAREITARKMAEEALR 452

Query: 321 LTPETVDKC----PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
            + E              ++  G +   N     +  Y   + I    G+  L    + S
Sbjct: 453 ESEERFKALHNASFGGIAIHDKGVILECNLGLSEMFGYARDELI----GMDGLFLVAERS 508

Query: 377 DNNAIKPVML----------YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
            +  +  +             R +            + +  +   A+ F     + +  +
Sbjct: 509 RDVVMAHIRAGYEKPYEEYGRRKNGEEFPMRLEARNLPYKGKMVRAVEFRDITDSVKAAQ 568

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVM 452
            +       E      ++    +   
Sbjct: 569 ALLDAKEAAESATRAKSEFLANMSHE 594


>gi|254412795|ref|ZP_05026568.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196180530|gb|EDX75521.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 797

 Score =  353 bits (907), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 116/775 (14%), Positives = 260/775 (33%), Gaps = 68/775 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD-ILHIDPNNHIGDLLKRQNTWYGKT 147
           +DA G +   +    +  G    ++ G    D+      +     I D L   N      
Sbjct: 37  LDAQGRIVYFNHACEQLTGYLRQEVQGKYAWDLLILPEDVASIQAIFDNLIPDNFPQPCE 96

Query: 148 TLWPIEGTNLYV--PIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           + W     +      +D   L   +           G                 L     
Sbjct: 97  SCWVTRDGDWRWIAWMDTVCL---NEQGTVEYVIATG--QDITERKQAEKALLELATLNQ 151

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPP---HLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
            + +              I +              + V   T    H  + +    + L 
Sbjct: 152 AILDSANYTIISTTVDGTISTFNRAAEKWLGYSASDVVGKTTPALFHDPEEIVERSHELC 211

Query: 263 TSEESSLPEQEDFHTI-----------------NLNQYTKKQYFGTLQNNSKESFEYLSH 305
               + +    +                     + +++        L N+  +   +L  
Sbjct: 212 QELNTPIQPGFEAFVAKARRGEIDEREWTYIRHDGSRFPVLLSITALYNSDNQIVGFLGI 271

Query: 306 RNHPSLSAYFDEGENLTP----ETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDD 359
            +   +    ++    +        D  P   ++Y        YAN S + L  Y   D 
Sbjct: 272 GSDIIIRKQAEQSLRDSQHFSQRIADTVPGILYLYDVIEQRNVYANRSTVELLGYTPQDI 331

Query: 360 ----------IEIAGGLSTLLDAPKL-----SDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
                     +     +  +L+  K       D++      +  ++       +R     
Sbjct: 332 QDIGTDFMSHLVHPEDIPHILEHQKHLTTLTEDDHLTLEYRMKHANGEWRWLRSRETVFS 391

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM--QLCSILEATS 462
                   +     E    +           ED++ R+ +R  ++E    QL   +E + 
Sbjct: 392 RTVAGLPKLLLGIAEDITDYKRVEDVLRQTNEDLEQRVEQRTADLENAHKQLRFHVENSP 451

Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF--TVFLEQNTPSVMNHYLTEILSLD 520
            G+   + +  +   ++   ++ G+  E++L K F    F+  +    ++     +L+ +
Sbjct: 452 LGVIEWDSQFRVQGWSKQAERILGWKAEEVLGKQFNDWQFVYPDDFEFVHQKALNLLNPE 511

Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKK 576
               +       TK+  +L  +     L   S   +     + D +E K ++ +L    +
Sbjct: 512 SPPEI-IENRNLTKDGNVLYCQWYNSVLFDESNAVVSILSLVQDQTERKHDEEQLQQLNQ 570

Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
             ++ +     F    SH++R PL  I  +S+++  +  G L + R  +Y  YI  S   
Sbjct: 571 QLQRSNQELEQFAYVASHDLREPLRKIRSYSDLLVKRYQGQL-DERADKYIGYITDSVIR 629

Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696
           +  ++ DLL  S++   ++ L  EP  L E + + ++ +     E + +I T+   ++P 
Sbjct: 630 MQALITDLLTYSRVSRNELVL--EPTDLGEILQQTLTDLSPAIEENQAIINTT---HLPI 684

Query: 697 ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755
           + A+   + Q+  N+++NAI F      QI I      +    + ++D G+G+     ++
Sbjct: 685 VQANSLQIGQVLQNLIANAIKFRREQPPQIDIKADCQDD-FWQISIQDNGIGIDPSYSDR 743

Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
               F ++    +    GTG+GL + + +V+ + GK ++ S   +G+      P+
Sbjct: 744 IFAIFQRLH--YREEYPGTGIGLAICQKIVERHGGKIWVESELGQGSTFYFTLPV 796



 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/295 (11%), Positives = 82/295 (27%), Gaps = 25/295 (8%)

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIA 363
                       E   LT   +D       +    G + Y N +   LT Y   + ++  
Sbjct: 6   PTPESLPLNALKEQRELTAAMLDLIGALIVILDAQGRIVYFNHACEQLTGYLRQE-VQGK 64

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
                L+      ++ A    +                 +  + +    + ++     N+
Sbjct: 65  YAWDLLIL----PEDVASIQAIFDNLIPDNFPQPCESCWVTRDGD-WRWIAWMDTVCLNE 119

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
                       +  + +  ++ +        +IL++ +  I     +G I + NRA  K
Sbjct: 120 QGTVEYVIATGQDITERKQAEKALLELATLNQAILDSANYTIISTTVDGTISTFNRAAEK 179

Query: 484 LFGYPVEDILRKPFTVFLEQNTP--------------SVMNHYLTEILSLDLRQTLEKIT 529
             GY   D++ K                          +   +   +      +  E+  
Sbjct: 180 WLGYSASDVVGKTTPALFHDPEEIVERSHELCQELNTPIQPGFEAFVAKARRGEIDEREW 239

Query: 530 LGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEK 580
                +     + + I  L  S      +     DI   KQ +  L  ++  +++
Sbjct: 240 TYIRHDGSRFPVLLSITALYNSDNQIVGFLGIGSDIIIRKQAEQSLRDSQHFSQR 294


>gi|239907358|ref|YP_002954099.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239797224|dbj|BAH76213.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 1062

 Score =  353 bits (907), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 128/778 (16%), Positives = 263/778 (33%), Gaps = 73/778 (9%)

Query: 93  GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG---KTTL 149
           G L E +E   +  G    ++IG     V    H    N + +  KR+ T      +  L
Sbjct: 150 GILVECNEAAERFFGRSREQLIGRP-QSVLHPPHTRLVNGVTEDFKRKATDPRGLEEIKL 208

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
              +G      +      I             G+              +  ++++  + +
Sbjct: 209 LASDGEVRDAEVTARVFDIGENK------LILGVFRDITERKRAEDALRESEQRYRRIVD 262

Query: 210 IKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
             +    +  E   I              ++++           + L+  +  +      
Sbjct: 263 TAQEGIRISDECGRIVYLNQRMSDLLGYSQDQMLGRNIEDFLFPEDLEDHRQRMEDRRRG 322

Query: 268 SLP-EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS---------------HRNHPSL 311
           S    ++     +           +L + +      L+               H+    L
Sbjct: 323 SDACYEKRLRRSDGTAVWTLVSVKSLPDATGRYDGSLAMFSDITDRKLAEEALHQEDARL 382

Query: 312 SAYFDEGENLTPETVDKCPIP--------------FFVYSHGNLFYANPSFLLLTKYK-- 355
               +  +  T  T                      + Y   +  +   S+         
Sbjct: 383 RKLLEIIQYDTANTQSLLDFALGKCLELTGSRFGYIYHYDEDSQSFTLNSWSRDVMQACS 442

Query: 356 --------SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
                    +    + G       A  ++D     P+     +      +     I  + 
Sbjct: 443 IANPQSCYELSKTGLWGEAVRQCRAVIVNDFLTDNPLKKGYPEGHAQLTNFLTVPI-LSN 501

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDV----DTRINKRKMEIEVMQLCSILEATSD 463
           +  +A+  +  ++ +    ++ Q  +  +      + R  +  +     +L   L A +D
Sbjct: 502 KRIVAVVGVANKQTDYMDSDVIQLSLLMDATWRVVERRQAEESLRKSDERLSLALMAAND 561

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDIL--RKPFTVFLEQNTPSVMNHYLTEILSLDL 521
           G+   +        +     + GY   +       +   L  +      H ++E L+   
Sbjct: 562 GMWDWDISSGTTYFSPRYYTMLGYQPGEFPSDFDTWKSLLHPDDVEHAIHIVSESLNNSE 621

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIA 578
              ++      + +   +  R  + +            T  DI+E K+ +  L  AK  A
Sbjct: 622 GFEIDFRMRTKSGDWSWILGRGRVVETDAEGHAKRMVGTHVDINERKRSQADLLSAKLQA 681

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
           E  +  KS+FLA +SHEIRTPL  I+G  ++++        N    EY     RS   + 
Sbjct: 682 EAANKAKSEFLANMSHEIRTPLNGILGMLQLLQTTE----PNEEQNEYLTGATRSTKRLT 737

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
            +++D+LDIS+IE+G+M++      + +       +    A  K +++   + + +P +L
Sbjct: 738 RLLSDILDISRIEAGRMDVVETEFDIYQLQDSIREIFYTEAQGKGLVLDFIWDDELPTVL 797

Query: 699 -ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-----EVILRVRDTGVGMTNYE 752
             D   ++QI  N++ NAI FT  G ++++  +   N       V+  V DTG+G+    
Sbjct: 798 IGDEARLRQILFNLVGNAIKFTDKG-EVLVEVSLLPNSNFSSVRVLFTVSDTGIGICEEH 856

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           L+   +PF Q   S   R +G GLGL + + +V    G   I S   +GT + +  PL
Sbjct: 857 LKYIFEPFVQAEISYTKRFQGAGLGLSIVRRLVSILGGDISIDSALGEGTTVYLSLPL 914



 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 43/324 (13%), Positives = 86/324 (26%), Gaps = 17/324 (5%)

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
           ++ L  Q+     N  Q          Q    E  +        + +   +E        
Sbjct: 75  DAQLSAQDRQLLGNSVQMLALLLERLAQREELEGRKAQLEDEVKTRTRELNETLERYQAL 134

Query: 326 VDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
                 P  V     G L   N +            I      S L        N   + 
Sbjct: 135 FASVSDPILVADRNTGILVECNEAAERFFGRSREQLIGRPQ--SVLHPPHTRLVNGVTED 192

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
                +D   +     +  +  + E           +     EN    G+  +  + +  
Sbjct: 193 FKRKATDPRGLE---EIKLLASDGEVR---DAEVTARVFDIGENKLILGVFRDITERKRA 246

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
           +  +     +   I++   +GI I +  G I+  N+ +S L GY  + +L +    FL  
Sbjct: 247 EDALRESEQRYRRIVDTAQEGIRISDECGRIVYLNQRMSDLLGYSQDQMLGRNIEDFLFP 306

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMH 559
                +  +   +                  +   +   + +K LP +            
Sbjct: 307 ED---LEDHRQRMEDRRRGSDACYEKRLRRSDGTAVWTLVSVKSLPDATGRYDGSLAMFS 363

Query: 560 DISEWKQEKNKLSHAKKIAEKESS 583
           DI++ K  +  L        K   
Sbjct: 364 DITDRKLAEEALHQEDARLRKLLE 387



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/292 (13%), Positives = 93/292 (31%), Gaps = 36/292 (12%)

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNR--ENSLAMTFIPFEKANQFPENMPQNGIEP 435
                 ++L   +         L     +      + M       A           +  
Sbjct: 35  EAMWSELILKWIEGPEHPGEPCLPVRTMSGYYGRFITMGSDAQLSAQDRQLLGNSVQMLA 94

Query: 436 EDVDTRINKRKMEIEVMQL------------------CSILEATSDGIAIINRE-GIILS 476
             ++    + ++E    QL                   ++  + SD I + +R  GI++ 
Sbjct: 95  LLLERLAQREELEGRKAQLEDEVKTRTRELNETLERYQALFASVSDPILVADRNTGILVE 154

Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTP--SVMNHYLTEILSLDLRQTLEKITLGSTK 534
            N A  + FG   E ++ +P +V    +T   + +        + D R   E   L S  
Sbjct: 155 CNEAAERFFGRSREQLIGRPQSVLHPPHTRLVNGVTEDFKR-KATDPRGLEEIKLLASDG 213

Query: 535 EEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
           E +   +   +  +  +        DI+E K+ ++ L  +++   +      + + R+S 
Sbjct: 214 EVRDAEVTARVFDIGENKLILGVFRDITERKRAEDALRESEQRYRRIVDTAQEGI-RISD 272

Query: 595 E------IRTPLTAIIGFS-EVIK----NQRFGPLGNPRYIEYANYIDRSGN 635
           E      +   ++ ++G+S + +          P     + +      R  +
Sbjct: 273 ECGRIVYLNQRMSDLLGYSQDQMLGRNIEDFLFPEDLEDHRQRMEDRRRGSD 324



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 57/528 (10%), Positives = 137/528 (25%), Gaps = 83/528 (15%)

Query: 2   STDSIISNPEDIL----TSNCKGNTQDLSKKKID-NGFETEKSKKENPCHDSFEQSNFTD 56
           S + +I  P+ +L    T    G T+D  +K  D  G E  K    +   +  +      
Sbjct: 166 SREQLIGRPQSVLHPPHTRLVNGVTEDFKRKATDPRGLEEIKLLASD--GEVRDAEVTAR 223

Query: 57  QNQ--------ESVSNTNYLDSENTFVFDPIPRTVRFT------WNIDAH-GYLKEISEE 101
                          +          + +   R  R          I    G +  +++ 
Sbjct: 224 VFDIGENKLILGVFRDITERKRAEDALRESEQRYRRIVDTAQEGIRISDECGRIVYLNQR 283

Query: 102 LPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPI 161
           +   +G    +M+G  + D      ++ +    +  +R +    +  L   +GT ++  +
Sbjct: 284 MSDLLGYSQDQMLGRNIEDFLFPEDLEDHRQRMEDRRRGSDACYEKRLRRSDGTAVWTLV 343

Query: 162 DLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI----------- 210
            + +LP       + G     +               + D +   L EI           
Sbjct: 344 SVKSLP--DATGRYDG--SLAMFSDITDRKLAEEALHQEDARLRKLLEIIQYDTANTQSL 399

Query: 211 --------------KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256
                         + G+     E    F+  S    +     +++    Y      L  
Sbjct: 400 LDFALGKCLELTGSRFGYIYHYDEDSQSFTLNSWSRDVMQACSIANPQSCYELSKTGLWG 459

Query: 257 EKYPLL------------------TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE 298
           E                           + L        ++  +          Q +  +
Sbjct: 460 EAVRQCRAVIVNDFLTDNPLKKGYPEGHAQLTNFLTVPILSNKRIVAVVGVANKQTDYMD 519

Query: 299 SFEYLSHRNHPSLSAYFDEGENL--TPETVDKCPIPFFVYSHGN--------LFYANPSF 348
           S          +     +  +      ++ ++  +     + G           Y +P +
Sbjct: 520 SDVIQLSLLMDATWRVVERRQAEESLRKSDERLSLALMAANDGMWDWDISSGTTYFSPRY 579

Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
             +  Y+  +         +LL    +     I    L  S+   I    R  +  W   
Sbjct: 580 YTMLGYQPGEFPSDFDTWKSLLHPDDVEHAIHIVSESLNNSEGFEIDFRMRTKSGDW--- 636

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
            S  +      + +         G   +  + + ++  +    +Q  +
Sbjct: 637 -SWILGRGRVVETDAEGHAKRMVGTHVDINERKRSQADLLSAKLQAEA 683


>gi|209527419|ref|ZP_03275925.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
 gi|209492154|gb|EDZ92503.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
          Length = 954

 Score =  353 bits (907), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 128/653 (19%), Positives = 250/653 (38%), Gaps = 34/653 (5%)

Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTE 245
              +  A  +  + K   +         V+  +              +  + + +  +  
Sbjct: 166 RVEERTAALRESEAKLEAMLNFAPAVIYVKDLQGRHTFVNRAFLKLFNCTLADIIGKVNH 225

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
            +   +     EK   +  E     + E+  TI+   YT   +   L + +++ +     
Sbjct: 226 DFYPPEVADVFEKNDRIVIESCHFHQLEEEVTIHDQNYTFLSHKFILFDQNQQPYALCGI 285

Query: 306 RNHPSLSAY----FDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDI 360
            N  +            +     T+   P   F + S G      PS            +
Sbjct: 286 SNDITQRKAFYNALQRSQEQLKATLQAIPDLVFRLNSQGEYLAIYPS--EYVGNLVDIKL 343

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
            I   +  LL  P  +  + +    L  +          +  +  + E    +   P   
Sbjct: 344 AIGHSIKELLPPPIAAKYSQVTQTALATNTLQTYEQDVVIDGVLRHEE----VRVAPCGD 399

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA---IINREG--IIL 475
                     +  +    + +     +     +   I      G+    +++ +G    +
Sbjct: 400 HEVVFVIRDISEQQAALRERQKAAATIRKSEDRFARIANNMP-GVLYQYVLHPDGSHNFI 458

Query: 476 STNRAVSKLFGYPVEDILRK--PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
             +    ++FG   + I R         E      +   +    S     + E   +   
Sbjct: 459 YISERCQQIFGLDADTITRDANELFRLFESEDFISLKSSILLSASTLNTWSWEGKLITPF 518

Query: 534 KEEKLLS-LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
            E+K +  +    ++      +   + DISE K  + KL       ++ +  K +FLA +
Sbjct: 519 GEKKWIQGISQPEQQPNGDILWDGVVVDISERKLMEIKLQKTVAELDRATRLKDEFLANM 578

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHE+RTPL  I+G SE +K    G L NP        I++SG  +L++++D+LD+SKIE+
Sbjct: 579 SHELRTPLNGILGMSEALKQGILGTL-NPNQHHAIAMIEKSGKHLLELISDILDLSKIEA 637

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR--ILADLRSVKQIALN 710
           GK+ L+   VS+ E  + +++LV   A  K+I I ++    + +  I  D R ++Q+ +N
Sbjct: 638 GKLELYLTEVSVQELCNSSLTLVNHLAFTKQINIESNIPQQLQKTFIKVDNRRLRQVLIN 697

Query: 711 ILSNAIHFTPSGGQIIISTTHTSN--------EEVILRVRDTGVGMTNYELEKAMKPFGQ 762
           +LSNA+ FT   G+I ++     +        + +   V D G+G+   +L+K   PF Q
Sbjct: 698 LLSNAVKFTHKAGKINLNVGIKPSTNLAISTPQSIYFSVVDNGIGIATDDLDKLFLPFTQ 757

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
           I +S   +  GTGLGL L K +++ + G   + S   KG+   +  P  +TS+
Sbjct: 758 IDSSLNRQYSGTGLGLALVKQIIELHGGCVEVSSQLGKGSCFTVYLPYNETSN 810



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 65/202 (32%), Gaps = 3/202 (1%)

Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR--KME 448
            T         T Q      L+++      A +            + ++ R+ +R   + 
Sbjct: 116 GTFAVYFKTCRTPQNQDLEILSLSAHIASIAIERDRTTQALADLNQQLEVRVEERTAALR 175

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
               +L ++L      I + + +G     NRA  KLF   + DI+ K    F       V
Sbjct: 176 ESEAKLEAMLNFAPAVIYVKDLQGRHTFVNRAFLKLFNCTLADIIGKVNHDFYPPEVADV 235

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL-RIIIKKLPFSSCYSLTMHDISEWKQE 567
                  ++       LE+      +    LS   I+  +           +DI++ K  
Sbjct: 236 FEKNDRIVIESCHFHQLEEEVTIHDQNYTFLSHKFILFDQNQQPYALCGISNDITQRKAF 295

Query: 568 KNKLSHAKKIAEKESSHKSDFL 589
            N L  +++  +       D +
Sbjct: 296 YNALQRSQEQLKATLQAIPDLV 317



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 36/380 (9%), Positives = 103/380 (27%), Gaps = 26/380 (6%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTT 148
           D  G    ++    K        +IG    D       D    +   +++  +    +  
Sbjct: 196 DLQGRHTFVNRAFLKLFNCTLADIIGKVNHDFYPPEVADVFEKNDRIVIESCHFHQLEE- 254

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
              +   +           ++ +N++   +   GI +            +R  ++     
Sbjct: 255 --EVTIHDQNYTFLSHKFILFDQNQQP--YALCGISNDITQRKAFYNALQRSQEQLKATL 310

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKN---KVSSLTEYYAHKDDVLKTEKYPLLTSE 265
           +           + +  +         + +    +    +         K  +       
Sbjct: 311 QAIPDLVFRLNSQGEYLAIYPSEYVGNLVDIKLAIGHSIKELLPPPIAAKYSQVTQTALA 370

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE------SFEYLSHRNHPSLSAYFDEGE 319
            ++L   E    I+     ++       ++         S +  + R     +A   + E
Sbjct: 371 TNTLQTYEQDVVIDGVLRHEEVRVAPCGDHEVVFVIRDISEQQAALRERQKAAATIRKSE 430

Query: 320 NLTPETVDKCPIPFFVY-----SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
           +      +  P   + Y        N  Y +     +    +      A  L  L ++  
Sbjct: 431 DRFARIANNMPGVLYQYVLHPDGSHNFIYISERCQQIFGLDADTITRDANELFRLFESED 490

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
               +    ++L  S     +   +L  I    E          +   Q   ++  +G+ 
Sbjct: 491 F--ISLKSSILLSASTLNTWSWEGKL--ITPFGEKKWIQGIS--QPEQQPNGDILWDGVV 544

Query: 435 PEDVDTRINKRKMEIEVMQL 454
            +  + ++ + K++  V +L
Sbjct: 545 VDISERKLMEIKLQKTVAEL 564


>gi|148263614|ref|YP_001230320.1| multi-sensor signal transduction histidine kinase [Geobacter
           uraniireducens Rf4]
 gi|146397114|gb|ABQ25747.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter
           uraniireducens Rf4]
          Length = 832

 Score =  353 bits (907), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 139/819 (16%), Positives = 285/819 (34%), Gaps = 112/819 (13%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGM-RLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
           +D  G    I++   + +G    ++IG  +  D+     +          K +   +   
Sbjct: 26  LDKDGVFTRINDTELRWLGYSREEVIGKIKFHDLITDRSLKTFQDNFPQFKVRGWVHDLE 85

Query: 148 T-LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD----- 201
             +   +G+   +P+ L+A  +   +  +   R    V+             +L      
Sbjct: 86  FEMVRKDGSI--LPVLLSASAVTDPDGNYVMSR--STVYDITERKRAEREIVQLAAIVEF 141

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
              + + +   G  +   +  +     +    +          ++      +L   +   
Sbjct: 142 SDDAIIGKTPDGIITSWNKGAERIYGYTADEIVGKPISTLVPADHADEVPQILDKIRRS- 200

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
               E     +      +            ++    +     +     ++    +     
Sbjct: 201 ----EHIEHYETVRRRKDGQLIEMSLAISPIREREGKITGASTIGRDITVQKRTESINMA 256

Query: 322 TPETVDKCPIPFFVYSHGN-----------------LFYANPSFLLLTKYKSVDD----- 359
               +                                  A+   L L  + +        
Sbjct: 257 RLRLLQFAATHTLDELLETTLNEVEVLTGSLIGFYHFLEADQKTLSLQNWSTRTKKEYCL 316

Query: 360 ---------IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR-TCIAASARLHTIQWNREN 409
                    +  AG     +   +   +N    +   +            L    +  E+
Sbjct: 317 AEGKGRHYNVSEAGVWVDCIHERRPVIHNDYSSLPHRKGLPAGHSPVVRELVVPVFRGES 376

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469
            +A+  +  +  +    ++    +  +     + ++++E  +  L +I+E + D I  I+
Sbjct: 377 IVAILGVGNKPRDYTTHDVETVSLLADLAWEVVERKRIEEALSLLAAIVEFSDDAIIGIS 436

Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
            EG I+S NR   +L+GYP E++   P ++ +  + P  M + L  +      +     T
Sbjct: 437 PEGTIVSWNRGAERLYGYPAEEVKVCPVSILIPDDHPEEMAYILDHVRQGKPIER--HET 494

Query: 530 LGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKE---- 581
           +   K+   + + + I  +  S    +       DI+E K+ + +L    +  E+     
Sbjct: 495 VRLRKDGSRVEVSVTISPICNSGGKIIGASTIARDITELKKAEIELRKLNEELEQRVIER 554

Query: 582 ------------------------------------------SSHKSDFLARVSHEIRTP 599
                                                        KS F+A +SHE+RTP
Sbjct: 555 TADLNRRSTELSESQQALMNIVEDLNEKTDELEGANTKLKEFDRLKSMFIASMSHELRTP 614

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L +IIGFS VI N+  GP+ N    E    I R G  +L+++ND++D+SKIE+GK+    
Sbjct: 615 LNSIIGFSSVILNEWIGPV-NAEQKENLAIILRCGKHLLNLINDVIDVSKIEAGKIESVA 673

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719
           E     + +SEA+ LV+    EK + ++ +  +   ++  D R + Q  LN+LSNA+ FT
Sbjct: 674 EEFDFYDLISEAVGLVRKDMEEKGLDLQVAATHQ--QMHMDRRRLLQCVLNLLSNALKFT 731

Query: 720 PSGGQIIISTTH-------TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
             GG + + T                + V DTG+G+   +L K  +PF ++ +  Q    
Sbjct: 732 EHGG-LTVETRIMPCPGEAPEAGVAEISVTDTGIGIREEDLPKMFQPFVRLASPLQATVP 790

Query: 773 GTGLGLPLAKAM-VDANMGKFYIFSTPAKGTLIEIIFPL 810
           GTGLGL L + +  +   G   + S   KG+   +  P+
Sbjct: 791 GTGLGLYLTRKLAAEVLKGDILLTSEYGKGSRFTLRIPV 829



 Score =  119 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 36/283 (12%), Positives = 90/283 (31%), Gaps = 18/283 (6%)

Query: 313 AYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
                      +  +  P  +  +   G     N + L    Y   + I        + D
Sbjct: 3   RALRTTIEELADLYNNAPCGYHSLDKDGVFTRINDTELRWLGYSREEVIGKIKFHDLITD 62

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
               +  +      +                +     + L +        +     +   
Sbjct: 63  RSLKTFQDNFPQFKVR------GWVHDLEFEMVRKDGSILPVLLSASAVTDPDGNYVMSR 116

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
               +  + +  +R    E++QL +I+E + D I     +GII S N+   +++GY  ++
Sbjct: 117 STVYDITERKRAER----EIVQLAAIVEFSDDAIIGKTPDGIITSWNKGAERIYGYTADE 172

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
           I+ KP +  +  +    +   L +I            T+   K+ +L+ + + I  +   
Sbjct: 173 IVGKPISTLVPADHADEVPQILDKIR--RSEHIEHYETVRRRKDGQLIEMSLAISPIRER 230

Query: 552 SCYS----LTMHDISEWKQEKN-KLSHAKKIAEKESSHKSDFL 589
                       DI+  K+ ++  ++  + +    +    + L
Sbjct: 231 EGKITGASTIGRDITVQKRTESINMARLRLLQFAATHTLDELL 273


>gi|304407987|ref|ZP_07389637.1| multi-sensor signal transduction histidine kinase [Paenibacillus
           curdlanolyticus YK9]
 gi|304343006|gb|EFM08850.1| multi-sensor signal transduction histidine kinase [Paenibacillus
           curdlanolyticus YK9]
          Length = 608

 Score =  353 bits (906), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 105/540 (19%), Positives = 213/540 (39%), Gaps = 50/540 (9%)

Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLL 351
           L ++  +     +H     +     EG        D        Y    +   N  + + 
Sbjct: 95  LGDSDHDPRSMDNHLQRVEVQQALHEGVGRGIRLSDTVNQNML-YVAVPITMDNHQYFIR 153

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS---ARLHTIQWNRE 408
                 D  +    L T L    L        V    +                IQ    
Sbjct: 154 LAMSLQDVEQSIRDLWTALIIWLLVLFVVAALVSYRVALGMTRPLEQITKVAKRIQRMDY 213

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468
            +        +K+++  +         + +  ++ +  +     QL S+L+   +GI +I
Sbjct: 214 RARV----DVKKSDEIGDLGYAINAMADSLQVQMER--IRQNESQLESVLDNMINGIIMI 267

Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528
           +R G I+  +R   ++ G    +++ + +T   +Q+  S +        + + +  + + 
Sbjct: 268 DRSGHIVLLSRRAEEILGISARELVGRHYTEARQQHELSQLI-----AEAFEKQTYIHEE 322

Query: 529 TLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
                 EE+LL L I+             L + D+S  ++ +                +S
Sbjct: 323 MTFYYPEERLLELNIVPMLQDKDDFVGVLLVLQDVSAIRRLE--------------RMRS 368

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
           +F+A VSHE++TP+ A+ GF+E +               +   I      +  ++ D+L+
Sbjct: 369 EFVANVSHELKTPVAAVKGFAETLLGGAVN--DEETARSFLQIIYDESERLNRLIGDILE 426

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706
           +SKIES ++ L   PV +D   ++ + L++  AN KRI +     + I  + AD   ++Q
Sbjct: 427 LSKIESRRVPLMLSPVEMDSFAAKTVQLMEAEANRKRITLELKADDEI-YVEADEDRLRQ 485

Query: 707 IALNILSNAIHFTPSGGQIIISTT----------------HTSNEEVILRVRDTGVGMTN 750
           I +N+LSN I++TP GG++ ++                      + + + ++DTG+G+  
Sbjct: 486 IMMNLLSNGINYTPEGGKVTVTVEPVWPASTGRSLLTDEERDDYDRIRITIKDTGIGIPK 545

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            +L +  + F ++  ++     GTGLGL + K +V+ + G   + S    GT   I  P+
Sbjct: 546 KDLPRIFERFYRVDKARSRSSGGTGLGLSIVKHLVEMHNGSIAVESEVGVGTKFIIELPV 605



 Score = 45.4 bits (106), Expect = 0.037,   Method: Composition-based stats.
 Identities = 28/230 (12%), Positives = 70/230 (30%), Gaps = 23/230 (10%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G++  +S    + +G  A +++G    +      +     I +  ++Q   + + T
Sbjct: 267 IDRSGHIVLLSRRAEEILGISARELVGRHYTEARQQHELSQ--LIAEAFEKQTYIHEEMT 324

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
            +  E   L    +L  +P+     +F G           +     +  +RL++  S   
Sbjct: 325 FYYPEERLL----ELNIVPMLQDKDDFVGVL---------LVLQDVSAIRRLERMRSEFV 371

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
                           F++      +  +    S  +    + + L      +L      
Sbjct: 372 ANVSHELKTPVAAVKGFAETLLGGAVNDEETARSFLQIIYDESERLNRLIGDIL------ 425

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
             E     +  +          +    + +  E  ++R   +L    D+ 
Sbjct: 426 --ELSKIESRRVPLMLSPVEMDSFAAKTVQLMEAEANRKRITLELKADDE 473


>gi|86159947|ref|YP_466732.1| PAS/PAC sensor hybrid histidine kinase [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85776458|gb|ABC83295.1| PAS/PAC sensor hybrid histidine kinase [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 1088

 Score =  353 bits (906), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 105/784 (13%), Positives = 223/784 (28%), Gaps = 83/784 (10%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI-GDLLKRQNTWYGKTT 148
           D  G +   +    +  G  A +++G  +  +           I  +L   +   + +T 
Sbjct: 200 DLDGVILTWNRAAERLFGYAADEVVGRSVTLLIPPDRRHEEAEILAELRAGRRVEHFETQ 259

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +GT L V + ++  P+        G     IV          A+      +     
Sbjct: 260 RVRKDGTRLDVSVTVS--PVRDEEGRLVGASK--IVRDISEQKRSEAVLAAALGRAQEER 315

Query: 209 EIKKGHSSVEKEK----------------YDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD 252
                                        +       P P    +              +
Sbjct: 316 RRLAAVLEALPAGVVITDAEGGFTEVNAEFKRIWGTPPNPQRMSEYAAWRGWWPDGRPVE 375

Query: 253 VLKTEKYPLLTSEESSLPEQ-------------EDFHTINLNQYTKKQYFGTLQNNSKES 299
             +      L++ +  +P                  +     +  +    G +      +
Sbjct: 376 TREWALSRALSTGDVIVPGDIVDIEKFDGSGRATIINAAAPIRNAEGTIVGAVLAEVDVT 435

Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF--FVYSHGNLFYANPSFLLLTKYKSV 357
            +                 E       ++  +      +  G     N +F  +      
Sbjct: 436 EQRRVEDALRRAEEAARASEARFRSVFEQAAVGMGRVRFDDGRWIDVNDAFCRMLGRSRE 495

Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
           D +      ST   A    ++  +      R     + +            + +      
Sbjct: 496 DML------STPWPAMTHPEDLELDLGPFRRMSAGELDSYTIEKRFLHADGHEVWAKLTL 549

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
               +       +  I  +  D +  +  +     +L +++E  ++G+ I +  G I   
Sbjct: 550 SLVRDARGRPDYEIAIIEDIGDRKRAETALREHEERLRAVMEHMAEGLVIFDPSGNITYQ 609

Query: 478 NRAVSKLFGYP--------VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
           N A   +             + +L      + E       +  +  +L  +  Q      
Sbjct: 610 NPASVSIHDRRLAGERRRLDQLVLNWRVRRYPEGIEVPPRDWAIPRVLRGERVQNERFFV 669

Query: 530 LGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHK 585
                  +          +  +         T+ +I+E  + ++ L  A +   +    K
Sbjct: 670 DCVEDPGRSFVGIYSGSPVHDAGGKLAYGFLTIEEITEQARAESALRDANEKLREVDRRK 729

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
            +FL  +SHE+R PL  I      I +         R  +  + + R    +  +V+DLL
Sbjct: 730 DEFLGMLSHELRNPLAPIRNSL-YILDHAEPAGQQARRAK--DIVARQVEHLTRLVDDLL 786

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
           D+++I  GK+ L  E + +           +     + + +          +  D   + 
Sbjct: 787 DVTRIARGKIELRREDLDVVGLARRVAEDHRSLMQGRGVELTIDLLPGALTVNGDPARLT 846

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           Q+  N+L+NA  FTP GG++ +S      +   LRVRDTG G+    L    +PF Q   
Sbjct: 847 QVLGNLLNNAAKFTPPGGRVTLSVRAE-GDRAALRVRDTGPGIAPDVLPTIFEPFFQAKQ 905

Query: 766 SQQIRG------------EGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFPLYD 812
           +                              V  + G+ + +S    +GT   +  PL  
Sbjct: 906 TLARSEGGLGLGLALVKGL------------VALHGGEVHAYSAGQGQGTEFVVTVPLAG 953

Query: 813 TSHP 816
              P
Sbjct: 954 RGLP 957



 Score =  142 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 47/561 (8%), Positives = 127/561 (22%), Gaps = 52/561 (9%)

Query: 63  SNTNYLDSENTFVFDPIPRTVRFT------WNIDAHGYLKEISEELPKTIGNYAFKMIGM 116
           SN + +D +     +     +         + +DA   +  ++    +       + +G 
Sbjct: 51  SNADCMDRDPGHTHEEAAHALELLEFGDAFFELDAQWRIVRVNRRQEELSRKPRSETVGR 110

Query: 117 RLCDVSDIL---HIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNR 173
            L +V   L              ++ +     +    P++     +   + A P+     
Sbjct: 111 TLAEVWPELAGPESRYRREYDRCMRERVPVQFQAYYAPLD-----LWTGVTAYPVS---- 161

Query: 174 EFSGFRGFGI-VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP 232
                 G  +                RL        +       ++              
Sbjct: 162 ----AGGIAVFFRDITRIKRAEQEQTRLAAIVESTDDAIVA-KDLDGVILTWNRAAERLF 216

Query: 233 HLRMKNKVSSLTEYYAHKDDV-LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291
                  V          D    + E    L +       +      +  +         
Sbjct: 217 GYAADEVVGRSVTLLIPPDRRHEEAEILAELRAGRRVEHFETQRVRKDGTRLDVSVTVSP 276

Query: 292 LQNNSKESFEYLSHRNHPSLSAYFD-----------EGENLTPETVDKCPIPFFVYSH-G 339
           +++               S     +           E        ++  P    +    G
Sbjct: 277 VRDEEGRLVGASKIVRDISEQKRSEAVLAAALGRAQEERRRLAAVLEALPAGVVITDAEG 336

Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399
                N  F  +                                +    S    I     
Sbjct: 337 GFTEVNAEFKRIWGTPPNPQRMSEYAAWRGWWPDGRPVETREWALSRALSTGDVIVPGDI 396

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK-------RKMEIEVM 452
           +   +++      +        N     +     E +  + R  +               
Sbjct: 397 VDIEKFDGSGRATIINAAAPIRNAEGTIVGAVLAEVDVTEQRRVEDALRRAEEAARASEA 456

Query: 453 QLCSILEATSDGI--AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
           +  S+ E  + G+     + +G  +  N A  ++ G   ED+L  P+          +  
Sbjct: 457 RFRSVFEQAAVGMGRVRFD-DGRWIDVNDAFCRMLGRSREDMLSTPWPAMTHPEDLELDL 515

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQ 566
                + + +L             +   +  ++ +  +  +          + DI + K+
Sbjct: 516 GPFRRMSAGELDS-YTIEKRFLHADGHEVWAKLTLSLVRDARGRPDYEIAIIEDIGDRKR 574

Query: 567 EKNKLSHAKKIAEKESSHKSD 587
            +  L   ++       H ++
Sbjct: 575 AETALREHEERLRAVMEHMAE 595



 Score =  115 bits (288), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 44/339 (12%), Positives = 109/339 (32%), Gaps = 29/339 (8%)

Query: 260 PLLTSEESSLPEQ-EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
                  +SLP +  D         +     G +++         +         +  E 
Sbjct: 7   ASSPGRRASLPGRCRDRPACRGPPRSPVPGCGGIRHVPTCVSWSSNADCMDRDPGHTHEE 66

Query: 319 ENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
                E ++     F + +   +   N     L++    + +     L+ +       ++
Sbjct: 67  AAHALELLEFGDAFFELDAQWRIVRVNRRQEELSRKPRSETVGRT--LAEVWPELAGPES 124

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQ-WNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
              +       +R  +   A    +  W    +  ++                     + 
Sbjct: 125 RYRREYDRCMRERVPVQFQAYYAPLDLWTGVTAYPVS------------AGGIAVFFRDI 172

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
              +  ++    E  +L +I+E+T D I   + +G+IL+ NRA  +LFGY  ++++ +  
Sbjct: 173 TRIKRAEQ----EQTRLAAIVESTDDAIVAKDLDGVILTWNRAAERLFGYAADEVVGRSV 228

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL- 556
           T+ +  +        L E+ +    +     T    K+   L + + +  +       + 
Sbjct: 229 TLLIPPDRRHEEAEILAELRAGR--RVEHFETQRVRKDGTRLDVSVTVSPVRDEEGRLVG 286

Query: 557 ---TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
               + DISE K+ +  L+       +    +    A +
Sbjct: 287 ASKIVRDISEQKRSEAVLA---AALGRAQEERRRLAAVL 322


>gi|71909326|ref|YP_286913.1| PAS [Dechloromonas aromatica RCB]
 gi|71848947|gb|AAZ48443.1| PAS protein [Dechloromonas aromatica RCB]
          Length = 1028

 Score =  353 bits (906), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 111/668 (16%), Positives = 214/668 (32%), Gaps = 67/668 (10%)

Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255
           L  R  +  +             +   +      P     +  +V++         +  +
Sbjct: 221 LDARQLRVINPQPPGDFPLVRSTRLYPEWPVAAMPWTENNLARQVAAAILSLPADGETAR 280

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG-----TLQNNSKESFEYLSHRNHP- 309
                  T  E   P  E    + L+ +     F                  L       
Sbjct: 281 AMNIHGFTIPEDYRPVDELMRQLRLSPFDAPPKFTINDVFVQFGAVIAVIAILGISVLIA 340

Query: 310 ------SLSAYFDEGENLTPETVDKCPIPFFVYS----------------HGNLFYANPS 347
                           + T  T+ +       +                  G + Y N +
Sbjct: 341 IVLALFRTIRRLKGERSRTKATMAQLSAAEARFRAIFDNVETLAIQGYLADGTVAYWNNA 400

Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
                 Y + + +     L  ++      D       M             RL   + + 
Sbjct: 401 SQTTYGYTAQEAL-GKSLLDLIIPPAMREDVRGAVQWMFSHKTGIP---PGRLKLQRKDG 456

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
                 +             M    I     +    ++ +     +   IL+   +G+  
Sbjct: 457 STVEVYSSHTVIDTADKGPMMFCLDI--NLTELVHTEQALIESESRQRMILQTLGEGVYG 514

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE---ILSLDLRQT 524
            + +G+    N A     G   ++ L K        +        L E   IL+    Q+
Sbjct: 515 TDLDGVCTFINPAALDYLGLQEDEALGKNTHTLFHHHRADGTPLPLAECPLILTARDGQS 574

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHA------- 574
                +   K  +   +R+ I             ++  DISE ++   +L          
Sbjct: 575 RRLEDVFWRKNGECFPVRLTITAKLRDGVITGVVVSFADISENRRVAKELEQHHTHLEAQ 634

Query: 575 -----------KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
                      ++ AE  +  KS FLA +SHEIRTPL A++G   +++            
Sbjct: 635 VRQRTEQLEIARQAAEAANRSKSAFLANMSHEIRTPLNAVLGMVHLLRRDA----PTLEQ 690

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
           I+  + ID +   +L ++ND+LDISKIE+GK+ L    V +   +   +S++   A +K 
Sbjct: 691 IDRLDKIDSASQHLLAVINDILDISKIEAGKLVLDETTVDITSILKRVVSVLGDRARQKG 750

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VIL 739
           + +R    +     + D   + Q  +N   NA+ FT  G  I +     +++     +  
Sbjct: 751 LELRVLADDFPHTFIGDPTRITQCLINYAGNAVKFTEHGS-ITLKARRMADDSNGVLIRF 809

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V DTG+G+++  +++    F Q  +S   +  GTGLGL + + + +   GK  + S   
Sbjct: 810 EVEDTGIGISDDAIDRLFGIFEQADSSTSRKFGGTGLGLAITRRLAELMGGKVGVSSRVG 869

Query: 800 KGTLIEII 807
            G+     
Sbjct: 870 AGSRFWFT 877



 Score = 55.4 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/267 (9%), Positives = 64/267 (23%), Gaps = 12/267 (4%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL------KR 139
            +  D  G    I+      +G    + +G     +      D               + 
Sbjct: 512 VYGTDLDGVCTFINPAALDYLGLQEDEALGKNTHTLFHHHRADGTPLPLAECPLILTARD 571

Query: 140 QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSG--FRGFGIVHVNRVDNDPRALG 197
             +   +   W   G    V + + A     R+   +G       I    RV  +     
Sbjct: 572 GQSRRLEDVFWRKNGECFPVRLTITAKL---RDGVITGVVVSFADISENRRVAKELEQHH 628

Query: 198 KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257
             L+ +     E  +      +      S         ++  ++++            T 
Sbjct: 629 THLEAQVRQRTEQLEIARQAAEAANRSKSAFLANMSHEIRTPLNAVLGMVHLLRRDAPTL 688

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
           +      +  S  +       ++   +K +    + + +      +  R    L     +
Sbjct: 689 EQIDRLDKIDSASQHLLAVINDILDISKIEAGKLVLDETTVDITSILKRVVSVLGDRARQ 748

Query: 318 GENLTPETVDKCPIPFFVYSHGNLFYA 344
                    D  P   F+     +   
Sbjct: 749 KGLELRVLADDFPHT-FIGDPTRITQC 774



 Score = 41.2 bits (95), Expect = 0.84,   Method: Composition-based stats.
 Identities = 30/369 (8%), Positives = 86/369 (23%), Gaps = 27/369 (7%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL---KRQNTWYGKT 147
           A G +   +     T G  A + +G  L D+     +  +           +     G+ 
Sbjct: 390 ADGTVAYWNNASQTTYGYTAQEALGKSLLDLIIPPAMREDVRGAVQWMFSHKTGIPPGRL 449

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
            L   +G+ + V    ++  +     +  G   F +                 + +   +
Sbjct: 450 KLQRKDGSTVEV---YSSHTVIDTADK--GPMMFCLDINLTELVHTEQALIESESRQRMI 504

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPP--HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
            +                             +++      +             PL    
Sbjct: 505 LQTLGEGVYGTDLDGVCTFINPAALDYLGLQEDEALGKNTHTLFHHHRADGTPLPLAECP 564

Query: 266 -------ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL---SHRNHPSLSAYF 315
                    S   ++ F   N   +  +        +   +   +       +  ++   
Sbjct: 565 LILTARDGQSRRLEDVFWRKNGECFPVRLTITAKLRDGVITGVVVSFADISENRRVAKEL 624

Query: 316 DEGENLTPETVDKCPIPFFVYSHGNLFYANP---SFLLLTKYKSVDDIEIAGGLSTLLDA 372
           ++        V +      +        AN    +FL    ++    +    G+  LL  
Sbjct: 625 EQHHTHLEAQVRQRTEQLEIARQ-AAEAANRSKSAFLANMSHEIRTPLNAVLGMVHLLRR 683

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
              +     +   +  + +  +A    +  I       L +        +          
Sbjct: 684 DAPTLEQIDRLDKIDSASQHLLAVINDILDISKIEAGKLVL---DETTVDITSILKRVVS 740

Query: 433 IEPEDVDTR 441
           +  +    +
Sbjct: 741 VLGDRARQK 749


>gi|78486517|ref|YP_392442.1| PAS/PAC sensor hybrid histidine kinase [Thiomicrospira crunogena
            XCL-2]
 gi|78364803|gb|ABB42768.1| PAS/PAC sensor hybrid histidine kinase [Thiomicrospira crunogena
            XCL-2]
          Length = 1410

 Score =  353 bits (906), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 102/378 (26%), Positives = 176/378 (46%), Gaps = 18/378 (4%)

Query: 436  EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
            E       +++++    QL  ++++    I + N +G ILS NR   K +    +++   
Sbjct: 777  EVKQRLQAEKRLKENETQLQGLIDSIPLMIMVTNHQGKILSANRQTLKNYQLNFQELSEL 836

Query: 496  PFTVFL-EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE--KLLSLRIIIKKLPFSS 552
              T F  + +    + + L         Q  +KI      +   + + L ++        
Sbjct: 837  NSTTFYSDPDDRQQILNALQA-----GEQIHQKIISMKDADGIPRKMMLSVLPIHFNQQP 891

Query: 553  CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
                   D++E  Q + +L  AK+ AE  S  KS FLA +SHEIRTP+ AIIGF+E++  
Sbjct: 892  ANLSIAIDLTERIQFEKELQQAKEQAESASQTKSQFLANMSHEIRTPMNAIIGFTELLNE 951

Query: 613  QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
            Q    +  PR   Y   I  +G  +L ++ND+LD+SKIE+GKM+L  + V+      E  
Sbjct: 952  Q----VTEPRLKRYIRTIQAAGKTLLTLINDILDLSKIEAGKMDLDKKAVNPHSLFDEIG 1007

Query: 673  SLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSG-GQIIISTT 730
             +  +    K +         +P  +L D   ++QI  N+L NA+ FT  G  ++ +S  
Sbjct: 1008 QIFMINIQRKGLDFLVDIDKTLPEGLLLDGVRLRQILFNLLGNAVKFTEQGYVKLKVSAC 1067

Query: 731  HTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
                      ++++V DTG+G+   +  +    F Q  N    +  GTGLGL + + +V+
Sbjct: 1068 DVDEHHSKLDILIQVSDTGIGIPEDQQARIFNAFEQRENQDVQKFGGTGLGLAITQRLVN 1127

Query: 787  ANMGKFYIFSTPAKGTLI 804
               G  ++ STP +GT  
Sbjct: 1128 MMGGDIWVESTPGQGTTF 1145


>gi|167566984|ref|ZP_02359900.1| sensory box histidine kinase/response regulator [Burkholderia
           oklahomensis EO147]
          Length = 749

 Score =  353 bits (906), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 110/626 (17%), Positives = 204/626 (32%), Gaps = 31/626 (4%)

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
             ++  +   I          +  +    S    L       +   +       +     
Sbjct: 5   ARRRAKNYAVIAGFVVIATLLQAALVHFGSADMPLTPYFPFIAAAAWATSLGGGIGATLA 64

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH--PSLSAYFDE 317
             +      L +   +      +  +   F  +          L        +L      
Sbjct: 65  SAVLIWVMFLSDTVAYPGPLSARIVQLATFVIVNGAICAIVAALKRSRRMNEALRRREAL 124

Query: 318 GENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
                   +        V    G L Y NP+   L        +                
Sbjct: 125 ARRYYEALLQSLTQGVIVSDRRGMLTYMNPAAAALIGC-DATAVRGLPFRDVFNAYDSRG 183

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           +      +                H +       + +  +     +   +      I  +
Sbjct: 184 ERARSTALEQVLRSGASATVE--RHWLASRDGPRVPIAEVASPLVDSAGDMNGAVLIVRD 241

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
               R            L  ++EA+ D I  +  +  I S N A  ++FGY  +    + 
Sbjct: 242 ISGERERAAA----NRMLRRLVEASPDAIVGVGADRRITSWNPAARRMFGYDEQAARGRD 297

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556
             + +         H L   LS           L + ++   L   +    +       +
Sbjct: 298 VAMLIAPRWRR--RHPLPASLSDVYEPIENVDVLCARQDGSRLRATLSASPVFDDRDACV 355

Query: 557 ----TMHDISEWKQEKNKLSHA-------KKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
               T+ D  E ++ + +  H+       ++ A+  +  K + LA VSHE+RTPL  I G
Sbjct: 356 ALSLTLRDTGEQRRRERRTHHSLRGARDARRQADTSNRLKDELLATVSHELRTPLNVIYG 415

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
           + EV++N   G L      +  + IDRS   +  +V D+LD S + +GK+ L   PV L 
Sbjct: 416 WIEVLRNPAGGAL----QQQAIDAIDRSARSLSRMVGDILDASSLATGKLRLDAMPVDLV 471

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725
             V++    +   A  + + +    A     +  D   ++Q+  N+LSNA  FTP GG++
Sbjct: 472 RIVNDVTGALGTAAQAEGLDLTVDCALETCIVSGDGERLRQVLSNLLSNAFKFTPRGGRV 531

Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
            +S    ++    L V DTG G++   L    + F +   S      G GLGL + + + 
Sbjct: 532 TVSL-MRTDSHATLVVADTGQGISPEFLPHVFEAFRRADGSPASSRRGLGLGLSIVRHIA 590

Query: 786 DANMGKFYIFSTPAK--GTLIEIIFP 809
           + + GK  + S   K  GT   +  P
Sbjct: 591 ELHGGKVEVASA-GKRLGTTFTVTLP 615



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/232 (11%), Positives = 55/232 (23%), Gaps = 5/232 (2%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK---RQNTWYGK 146
           D  G L  ++      IG  A  + G+   DV +             L+   R       
Sbjct: 144 DRRGMLTYMNPAAAALIGCDATAVRGLPFRDVFNAYDSRGERARSTALEQVLRSGASATV 203

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
              W        VPI   A P+     + +G     IV     + +  A  + L +    
Sbjct: 204 ERHWLASRDGPRVPIAEVASPLVDSAGDMNGA--VLIVRDISGERERAAANRMLRRLVEA 261

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
             +   G  +  +      + +    +     +   +    A +          L    E
Sbjct: 262 SPDAIVGVGADRRITSWNPAARRMFGYDEQAARGRDVAMLIAPRWRRRHPLPASLSDVYE 321

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
                       + ++         + ++                    +  
Sbjct: 322 PIENVDVLCARQDGSRLRATLSASPVFDDRDACVALSLTLRDTGEQRRRERR 373



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/208 (9%), Positives = 55/208 (26%), Gaps = 22/208 (10%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           + A   +   +    +  G       G  +  +        +     L            
Sbjct: 269 VGADRRITSWNPAARRMFGYDEQAARGRDVAMLIAPRWRRRHPLPASLSDVYEPIENVDV 328

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                     +   L+A P++                     +   AL   L        
Sbjct: 329 -LCARQDGSRLRATLSASPVFDD------------------RDACVALSLTLRDTGEQRR 369

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
             ++ H S+   +    +++      R+K+++ +   +       +      +L +    
Sbjct: 370 RERRTHHSLRGARD---ARRQADTSNRLKDELLATVSHELRTPLNVIYGWIEVLRNPAGG 426

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNS 296
             +Q+    I+ +  +  +  G + + S
Sbjct: 427 ALQQQAIDAIDRSARSLSRMVGDILDAS 454


>gi|294140100|ref|YP_003556078.1| sensory box histidine kinase/response regulator [Shewanella
           violacea DSS12]
 gi|293326569|dbj|BAJ01300.1| sensory box histidine kinase/response regulator [Shewanella
           violacea DSS12]
          Length = 1486

 Score =  353 bits (906), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 106/523 (20%), Positives = 196/523 (37%), Gaps = 25/523 (4%)

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTK 353
           +      E L   N   + A     E+     +D+  I       G + YAN  F  ++ 
Sbjct: 413 DAKARHEEALLEANSQVMEALDSLEEHKFA--LDQHAIVAVTDLKGTITYANDKFSEISG 470

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
           YK  D I      +  +       +     +    S              +        +
Sbjct: 471 YKVDDLIGQ----NHRILNSGFHPSEFFSEMYRTVSKGKVWHGEICNRNKR---GEIYWV 523

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
                   +          I  +  + +  +  ++  +  + + LE+T +GI + + +G 
Sbjct: 524 DTTIMALKDTRNLPKSYIAIRADITERKRTEIAVKEALSLMNATLESTDNGILVTSIDGE 583

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
           IL TN   S L+G   +++L K     +      V+       L        ++      
Sbjct: 584 ILRTNCQFSHLWGV-AKELLDKGVNDRVILKQIKVLLKKPETFLKRVEEIYEDRELEAFD 642

Query: 534 K----EEKLLSLRIIIKKLPFSS-CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
                + ++        ++         +  DI+E  + +N L  AK+ AE  +  KS+F
Sbjct: 643 TIALIDGRVFERASSPMEVDGEYFGRVWSFRDITERTENQNALLQAKEEAELATKAKSEF 702

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
           LA +SHEIRTP+  +IG   ++ N +             +    S   +L ++ND+LD S
Sbjct: 703 LASMSHEIRTPMNGVIGMLGLLSNSKL----TEYQNRRVSIAQSSAQSLLSLINDILDYS 758

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN-NIPRILADLRSVKQI 707
           KI++GK+ L     +L   + +    +   A  K++ +           +  D   ++Q 
Sbjct: 759 KIDAGKLELEQIDFNLRGMLGDFAEGIAHQAQNKKLELILDLKGVEQSMVTGDPGRLRQA 818

Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQI 763
             N+  NAI FT  G ++++        E    +I  V DTG+G+   +++   K F Q+
Sbjct: 819 ITNLTGNAIKFTKQG-EVVVRAELKPAHEGKWWLICSVSDTGIGIPADKIDGLFKSFSQV 877

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
             S   +  GTGLGL + K +     G   + S    G+  EI
Sbjct: 878 DASTTRKYGGTGLGLAIVKKISRLMGGDVSVSSVYGIGSCFEI 920



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/372 (10%), Positives = 92/372 (24%), Gaps = 25/372 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147
            D  G +   +++  +  G     +IG     ++   H     + +   + +   W+G+ 
Sbjct: 452 TDLKGTITYANDKFSEISGYKVDDLIGQNHRILNSGFHPSEFFSEMYRTVSKGKVWHGEI 511

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                 G   +V   + AL      R         I              K      +  
Sbjct: 512 CNRNKRGEIYWVDTTIMAL---KDTRNLP-KSYIAIRADITERKRTEIAVKEALSLMNAT 567

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
            E       V     +I             + +  + +    K    +     +    + 
Sbjct: 568 LESTDNGILVTSIDGEILRTNC------QFSHLWGVAKELLDKGVNDRVILKQIKVLLKK 621

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
                +    I  ++  +      L +                         ++T  T +
Sbjct: 622 PETFLKRVEEIYEDRELEAFDTIALIDGRVFERASSPMEVDGEYFGRVWSFRDITERTEN 681

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
           +  +            A   FL    ++    +    G+  LL   KL++    +  +  
Sbjct: 682 QNALLQAKEEAELATKAKSEFLASMSHEIRTPMNGVIGMLGLLSNSKLTEYQNRRVSIAQ 741

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
            S ++ ++    +          L +  I F       +                     
Sbjct: 742 SSAQSLLSLINDILDYSKIDAGKLELEQIDFNLRGMLGDFAEGIAH-------------- 787

Query: 448 EIEVMQLCSILE 459
           + +  +L  IL+
Sbjct: 788 QAQNKKLELILD 799


>gi|209550469|ref|YP_002282386.1| PAS/PAC sensor hybrid histidine kinase [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209536225|gb|ACI56160.1| PAS/PAC sensor hybrid histidine kinase [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 1126

 Score =  353 bits (906), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 137/799 (17%), Positives = 271/799 (33%), Gaps = 81/799 (10%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151
                 ++E     +G      IG R  ++ D    +             T         
Sbjct: 28  ELRYVAVNEAYADFLGREISDFIGRRSRELFDRPEEEEREDRERRALVFGTEENAICFDA 87

Query: 152 IEGTNLYVPID-LAALPIYS--------RNREFSGFRGFG---IVHVNRVDNDPRALGK- 198
               +  + I+  +  P  +        R+R   G    G    V+ + +     AL + 
Sbjct: 88  AGLGHERIQIESFSPSPDRAYVLGVFEVRDRRAVGRETGGSPRTVNDSDLAQVREALERL 147

Query: 199 --------------------RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP-------- 230
                               R   K +   + +   S  E +      +  P        
Sbjct: 148 EQPIGIFAEDGRPLVVNAAYRTGAKPAARSDTRWHESVNEGDLLRTIMEDLPVAVFVRDD 207

Query: 231 ------------PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTI 278
                             +++V  +TE+     +  +        + E  L ++ +    
Sbjct: 208 KHRLVYANRYYETFGGYDRSQVLGMTEHEMFGPEEGEAIYQENRLALEDGLSKEIESQMP 267

Query: 279 NLNQYTKKQYFGTLQNNSKESFEYLSHR------------NHPSLSAYFDEGENLTPETV 326
             +           +  + +   Y+                        +         +
Sbjct: 268 GRDGRIHPLISRVNRVVTADGRTYVVGSFSDIAPLKEREKALIEAKKQEEALHRDIESIL 327

Query: 327 DKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
              PI   +  +   +  AN  F  + +    D  +    +  +    +L   +  +   
Sbjct: 328 RSLPIGVLILDNDHRILSANDEFYSIWELPLDDPFDGRHFVDVIRRNNELGRYDGTQTAE 387

Query: 386 LYRSDRTCIAASARLHTIQ--WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
              + R  +  +     I+  W    S+                   + +   + +    
Sbjct: 388 EIYAFRKHLFETDEPEPIELGWAGGKSVIFDSRRISNDRILLTYADISAVREREKEIHET 447

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE--DILRKPFTVFL 501
           +  +E     +     A S G+AI+ ++GII  +N A++ +   P    +  +    +F 
Sbjct: 448 RAALERVGEMMRDATHAMSQGLAIV-QDGIIKMSNEAMAAILQIPPAYIEAGQGWLGMFE 506

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGST-KEEKLLSLRIIIKKLPFSSCYSLTMHD 560
                   +    EIL         +  + +         + +    +     +     D
Sbjct: 507 FCAARGDFHDAADEILQGWRANIAARQPISTVFHVGGERWVNMDAM-VSEGQHWVALFTD 565

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           ++E K  + +L H    AE     KS+FLA +SHEIRTP+  ++G +E++          
Sbjct: 566 VTELKSREEELRHLLSRAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKTNLDT--- 622

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
            R   + + I +SGN +L I+ND+LD SKI++G+M L      + EAV +  +L+  +A 
Sbjct: 623 -RQKTFVDIIVKSGNALLTIINDILDFSKIDAGQMKLRRAAFDITEAVEDVATLLSSHAA 681

Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVI 738
           EK I +    A ++P  ++ D    +QI  N++ NA+ FT  G   + +     +  E++
Sbjct: 682 EKNIELLVRAAPDLPAAVIGDAGRFRQIVTNLVGNAVKFTERGHVFVDVGFEAAAGGEIM 741

Query: 739 --LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
             +R+ DTG+G+   +LE     F Q+  S   R EGTGLGL +   +VD   G   + S
Sbjct: 742 ASIRIEDTGIGIPAEKLESVFDKFSQVDASSTRRHEGTGLGLAITAGLVDLFGGYLNVES 801

Query: 797 TPAKGTLIEIIFPLYDTSH 815
              KG++  +  P    + 
Sbjct: 802 EWGKGSVFTVNLPFAVAAA 820



 Score = 47.3 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 34/415 (8%), Positives = 89/415 (21%), Gaps = 36/415 (8%)

Query: 66  NYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL 125
             ++  +          V   +  D    L   +       G    +++GM   ++    
Sbjct: 183 ESVNEGDLLRTIMEDLPVA-VFVRDDKHRLVYANRYYETFGGYDRSQVLGMTEHEMFGPE 241

Query: 126 HIDP-------------NNHIGDLLKRQNTW-----YGKTTLWPIEGTNLYVPIDLAALP 167
             +              +  I   +  ++            +   +G    V       P
Sbjct: 242 EGEAIYQENRLALEDGLSKEIESQMPGRDGRIHPLISRVNRVVTADGRTYVVGSFSDIAP 301

Query: 168 IYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ 227
           +  R +     +         +  D  ++ + L      L    +  S+ ++        
Sbjct: 302 LKEREKALIEAKK----QEEALHRDIESILRSLPIGVLILDNDHRILSANDEFYSIWELP 357

Query: 228 QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287
              P   R    V          D     E+            E E          +   
Sbjct: 358 LDDPFDGRHFVDVIRRNNELGRYDGTQTAEEIYAFRKHLFETDEPEPIELGWAGGKSVIF 417

Query: 288 YFGTLQNNSKESFEYLSHRNHPSL------SAYFDEGENLTPETVDKCPIPFFVYSHGNL 341
               + N+                       A  +    +  +          +   G +
Sbjct: 418 DSRRISNDRILLTYADISAVREREKEIHETRAALERVGEMMRDATHAMSQGLAIVQDGII 477

Query: 342 FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401
             +N +   + +          G L          D +     +L        A      
Sbjct: 478 KMSNEAMAAILQIPPAYIEAGQGWLGMFEFCAARGDFHDAADEILQGWRANIAARQPIST 537

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
                 E  + M  +         E      +  +  + +  + ++   + +  +
Sbjct: 538 VFHVGGERWVNMDAMV-------SEGQHWVALFTDVTELKSREEELRHLLSRAEA 585


>gi|295681455|ref|YP_003610029.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1002]
 gi|295441350|gb|ADG20518.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1002]
          Length = 868

 Score =  353 bits (906), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 111/753 (14%), Positives = 240/753 (31%), Gaps = 45/753 (5%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144
           F W  D  G ++  +    + +G  A +++GM          ID        ++      
Sbjct: 11  FVWRADRDGVVRYANPWTSRYLGIPALELVGMHWKTFVHPDDIDHVLDAVRQMRDGTLLG 70

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
                  +     Y    L        +         G+           A+ +  +++ 
Sbjct: 71  NVEVRL-LRADGEYRWHVLHLQAERDASGRIGDT--VGVATDIHEARHAWAMYEASERRL 127

Query: 205 SHLH----------EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254
                         ++K+    +  +  D++        L + +  + +   Y       
Sbjct: 128 KAAFHGARMGAWEWDMKRRVVRMTSQLADLYGFPPGTDALALSDLENRVEPEYRALFQRK 187

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
             +        E          +    +      +      +             +    
Sbjct: 188 VDDALQHGGPFEFDFVLNGGSPSPRWLRMRGHAEYEH-GTLAHVYGVTFDISKERAAEEQ 246

Query: 315 FDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
               E      V+      +    +G++  A   +   T   +V  +   G L  +    
Sbjct: 247 LSLSERRYRVLVESTGALVWSAEPNGDIRPAGEDWSRFTGEGAV-RLADWGWLDYVHPDD 305

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
           + +       V+  R+  +       +  ++ +      M        +   +     G 
Sbjct: 306 REAARQGWVDVLQRRAPGSI------MFRMRHHDGQYRMMHAQAAPLFDSHGKLQEWFGT 359

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR-AVSKLFGYPVEDI 492
             +       +  +E   ++L   ++A    I   +     LS       ++      D 
Sbjct: 360 TTDVTPQYEAQLAIEARNLRLSVAMQAARLNIVCFDLASRTLSFEEGRAPRIDHVLSYDE 419

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
             +        +  +++  Y+  +   +                +   +         + 
Sbjct: 420 ALRNV----HPDDRAMLEQYVLRLAEGNDP-VANFEFRLQNAHGEQ-WMHGSALLQRGAD 473

Query: 553 C----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                   ++ DI++ KQ +  L        +    K +FLA ++HE+R PL  +     
Sbjct: 474 GKPLRIIASVIDITQRKQLELML-------RETDRRKDEFLAMLAHELRNPLAPLRTAIA 526

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
            + +++ G    P+  E  N + R    +  IV+DLL++S+I  G++ L  EPV +  AV
Sbjct: 527 -LLDKQPGTASRPQ--ELINLMRRQVEHMTRIVDDLLEVSRITQGRIVLQLEPVLVGTAV 583

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
             A+  +   A  +   +  S  +    +  D+  + QI +NIL+NA  +TP  G I ++
Sbjct: 584 YHAVEAIAAMAEARHQQLHVSVCDPTTWVCGDITRISQIFVNILNNASKYTPENGHITVN 643

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                +E V +  +DTG G++   L K  + F Q   +      G G+GL L K +V+ +
Sbjct: 644 VA-ADDEWVSIVTQDTGTGISAELLPKVFELFSQGERTLDRSDGGLGIGLSLVKKLVEMH 702

Query: 789 MGKFYIFST-PAKGTLIEIIFPLYDTSHPHDCI 820
            G   + S  P  GT + +  P       H  +
Sbjct: 703 NGTIAVHSEGPNLGTTVTVRLPRLHHHERHSAV 735



 Score = 65.0 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 11/125 (8%), Positives = 38/125 (30%), Gaps = 6/125 (4%)

Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520
               +   +R+G++   N   S+  G P  +++   +  F+  +    +   + ++    
Sbjct: 8   LPSFVWRADRDGVVRYANPWTSRYLGIPALELVGMHWKTFVHPDDIDHVLDAVRQMRDG- 66

Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKK 576
                         + +     + ++    +S           DI E +        +++
Sbjct: 67  -TLLGNVEVRLLRADGEYRWHVLHLQAERDASGRIGDTVGVATDIHEARHAWAMYEASER 125

Query: 577 IAEKE 581
             +  
Sbjct: 126 RLKAA 130


>gi|57235045|ref|YP_180877.1| sensory box sensor histidine kinase [Dehalococcoides ethenogenes 195]
 gi|57225493|gb|AAW40550.1| sensory box sensor histidine kinase [Dehalococcoides ethenogenes 195]
          Length = 1061

 Score =  353 bits (906), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 102/751 (13%), Positives = 250/751 (33%), Gaps = 68/751 (9%)

Query: 95   LKEISEELPKTIGNYAFKMIGMRLCDVSDILH--IDPNNHIGDLLKRQN--TWYGKTTLW 150
            + +I++   + +G    +++G    +     +  +  ++    ++  +          + 
Sbjct: 331  VLQINKRGCEILGYEYQEIVGRNWFESFVPGYRRLIKHSMYKQIISGKADLPERYMDVVL 390

Query: 151  PIEG-TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
              +G   + +     +  I S++ + +     G               +  ++K+  L E
Sbjct: 391  TKDGQEKVILW---HSTAIRSQDGKLNSILYSG--EDVTELKHIEEALRMSEEKYHTLFE 445

Query: 210  IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK--------DDVLKTEKYPL 261
                 +    +K  I         +  +++   L    A            ++  E+ P+
Sbjct: 446  TMAQGAIYIDDKGIIIETNPAANTIFGRHESELLGTNIADPVWTYVQENGSIMPPEENPV 505

Query: 262  LTSEESSLPEQEDF----HTINLNQYTKKQYFGTL-----QNNSKESFEYLSHRNHPSLS 312
            +T+ ++    +  F    + ++        +   L     +N+      +       +  
Sbjct: 506  ITALKTGKAVRNVFMGIKNNLSGEVRWVNLFALPLFRLNQENSYMVYTTFTDISRLKNAR 565

Query: 313  AYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
                  EN      +        +  +G +   N     +  Y   + +           
Sbjct: 566  DALTRSENRYRSIFETAASIIISFDQNGIINDCNMRVQEILGYTPAELVG------MSFL 619

Query: 372  APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
                          +   +R  I  +     +  + +    +        ++        
Sbjct: 620  EIVEEPFRHEVRRHIASLNRGEIIYNKDCRMLHKDGK-YRDVMVNCSTLLDENGSVTNAI 678

Query: 432  GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-PVE 490
             I  +  + +     +     ++  +    ++GI +++ +G I   N+ + K+  Y   +
Sbjct: 679  CIISDITEQKQTHNALIASEEKIRGMFNGVNEGIIVMDTQGYITEVNQTILKMNNYTSKD 738

Query: 491  DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
             ++ +    F+          YL +  SL+  +      L    +      +I    L  
Sbjct: 739  QMIGRHGLEFIAPKDREEARAYLAQADSLN--EVRNLELLCVRPDGTEYFCQISGAVLRD 796

Query: 551  ----SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
                     +   DI+E K+ + +L    ++A        +  + ++HEI  PLT I+GF
Sbjct: 797  YSGEIQGIIILSADITEHKKLEQQLIMTDRMA-----SVGELASGLAHEINNPLTGIVGF 851

Query: 607  SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
            SE+               E    I R      ++V +LL  ++    +     E   ++ 
Sbjct: 852  SEL----LLMNELEESIKEDVQTIHREALRAAEVVRNLLTFAR----QQTPTREAGDINL 903

Query: 667  AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA-----IHFTPS 721
            ++ + + L +       I   T    ++PR++ D+  ++Q+ +NI+ NA     +     
Sbjct: 904  SIQKVLELRKHDHRINNIRCITELDPDLPRVMLDVFQIQQVLINIIINAEFFLRLK---E 960

Query: 722  GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
              QI I T+       ++ + D G G++   +++   PF          G+GTGLGL + 
Sbjct: 961  HPQITIKTSRR-KGYAVISISDNGPGISPENIKRIFDPFFTTK----EVGKGTGLGLSIC 1015

Query: 782  KAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
              +++ + G+    STP  G    I  P  D
Sbjct: 1016 HGIIEEHHGRISAESTPGNGATFRIELPFAD 1046



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 62/493 (12%), Positives = 140/493 (28%), Gaps = 36/493 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCD-----VSDILHIDPNNH--IGDLLKRQN 141
           ID  G + E +       G +  +++G  + D     V +   I P     +   LK   
Sbjct: 454 IDDKGIIIETNPAANTIFGRHESELLGTNIADPVWTYVQENGSIMPPEENPVITALKTGK 513

Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
                        +     ++L ALP++  N+E S +  +          + R    R +
Sbjct: 514 AVRNVFMGIKNNLSGEVRWVNLFALPLFRLNQENS-YMVYTTFTDISRLKNARDALTRSE 572

Query: 202 KKFSHLHEIKKGHSSVEKEKYDI----FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257
            ++  + E          +   I       Q    +   +    S  E            
Sbjct: 573 NRYRSIFETAASIIISFDQNGIINDCNMRVQEILGYTPAELVGMSFLEIVEEPFRHEVRR 632

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL----SHRNHPSLSA 313
               L   E    +       +           TL + +      +              
Sbjct: 633 HIASLNRGEIIYNKDCRMLHKDGKYRDVMVNCSTLLDENGSVTNAICIISDITEQKQTHN 692

Query: 314 YFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                E       +       V    G +   N + L +  Y S D +    GL     A
Sbjct: 693 ALIASEEKIRGMFNGVNEGIIVMDTQGYITEVNQTILKMNNYTSKDQMIGRHGLE--FIA 750

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
           PK  +        L ++D      +  L  ++ +               +   E      
Sbjct: 751 PKDREEAR---AYLAQADSLNEVRNLELLCVRPDGTEYFCQ-ISGAVLRDYSGEIQGIII 806

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
           +  +  + +  ++++ +   ++ S+ E  S         G+    N  ++ + G+    +
Sbjct: 807 LSADITEHKKLEQQLIM-TDRMASVGELAS---------GLAHEINNPLTGIVGFSELLL 856

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII-IKKLPFS 551
           + +     ++++  ++    L     +    T  +     T+E   ++L I  + +L   
Sbjct: 857 MNELEES-IKEDVQTIHREALRAAEVVRNLLTFARQ-QTPTREAGDINLSIQKVLELRKH 914

Query: 552 SCYSLTMHDISEW 564
                 +  I+E 
Sbjct: 915 DHRINNIRCITEL 927



 Score = 70.8 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 18/159 (11%), Positives = 57/159 (35%), Gaps = 5/159 (3%)

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
                +    + +++ E  +    L+     I +++   I+L  N+   ++ GY  ++I+
Sbjct: 291 IRHRQELARTEIRLKEERDKAQLYLDIAGVIIVVLSENEIVLQINKRGCEILGYEYQEIV 350

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK---ITLGSTKEEKLLSLRIIIKKLPF 550
            + +          ++ H + + +        E+   + L    +EK++       +   
Sbjct: 351 GRNWFESFVPGYRRLIKHSMYKQIISGKADLPERYMDVVLTKDGQEKVILWHSTAIRSQD 410

Query: 551 S--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
              +    +  D++E K  +  L  +++         + 
Sbjct: 411 GKLNSILYSGEDVTELKHIEEALRMSEEKYHTLFETMAQ 449


>gi|71908547|ref|YP_286134.1| PAS [Dechloromonas aromatica RCB]
 gi|71848168|gb|AAZ47664.1| PAS protein [Dechloromonas aromatica RCB]
          Length = 955

 Score =  353 bits (906), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 123/661 (18%), Positives = 234/661 (35%), Gaps = 45/661 (6%)

Query: 180 GFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK 239
           G GIV    V        +R     S + + +  +      + D    +        K  
Sbjct: 153 GVGIVARLPVFLPDGEGQERFWGIVSAVVDAELLYR-NSGLRDDNSPIEIAIRGTDGKGS 211

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG----TLQNN 295
              +                  L S    L                    G     L   
Sbjct: 212 EGGVFFGRPALFAESPVLAEINLPSGTWQLAALPRGGWPTRADNVWLLRLGMAVVALLVL 271

Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP-IPF-FVYSHGNLFYANPSFLLLTK 353
                 + +        A  +        T++  P +   +    G + Y N +   L  
Sbjct: 272 GAFLVLWRALNQASQAWARAESSGRQLSATLENTPDVAVQWYDLQGRVIYWNHASEQLYG 331

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
           + + + I     L  L+   + +DN       +  S +    A    ++I+   +    +
Sbjct: 332 WSAEEAIGQR--LDRLIFDREQTDNFTRLLDEVAASGKPIGPAE---YSIRTRDDELRWV 386

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
               F    + PE      ++ +  D +  ++++        + L  T+D +   + +G 
Sbjct: 387 EATMFSIPGESPEKPILVCMDVDITDRKQAEKELADFNRDFEAFLNQTTDFVYFKDAKGC 446

Query: 474 ILSTNRAVSKLFGY-PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
               ++A++++ G+    +++ K        +T  V       +L+      L KI    
Sbjct: 447 FRFCSQAMAEISGHASWREMIGKHDREIFPPDTARVYQEEEYRVLTEGRP-LLNKIEPYY 505

Query: 533 TKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAK------------- 575
             + +   ++     L               DISE  + + +L+  +             
Sbjct: 506 DADGQRGYVQTYKWPLFDEQKRVVGLFGVSRDISEQVRNEEELAQHRLHLEELVAERTEE 565

Query: 576 -----KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
                + AE  +  KS+FLA +SHEIRTPL AI G + +I+     P      +E  + +
Sbjct: 566 LAVAKESAEAANVAKSEFLANMSHEIRTPLNAISGMAHLIRRGGLAP----EQMERLDRL 621

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
           + +   +L+ +N +LD+SKIE+GK +L   P+ +   +    +++Q  A  K + +    
Sbjct: 622 ELASEHLLETINAILDLSKIEAGKFSLEEAPLRVAGILDNVTAILQDRAQAKHLQLSVES 681

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGV 746
              +P +L D   ++Q  LN +SNAI FT SG +I +       +     +   V DTG+
Sbjct: 682 DPTLPPLLGDPVHLQQALLNYMSNAIKFTESG-RITLRARRVDEDADSLLLRFEVEDTGI 740

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+    L +    F Q  NS   R  GTGLGL + + +     G     S   +G+   +
Sbjct: 741 GIAPEHLPRLFSAFEQADNSITRRYGGTGLGLAITRKIARLVGGDAGASSVLGQGSTFWL 800

Query: 807 I 807
            
Sbjct: 801 T 801



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 41/376 (10%), Positives = 95/376 (25%), Gaps = 37/376 (9%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYA-FKMIGMRLCDVSDILHID--PNNHIGDLLKRQN 141
           F +  DA G  +  S+ + +  G+ +  +MIG    ++                L + + 
Sbjct: 437 FVYFKDAKGCFRFCSQAMAEISGHASWREMIGKHDREIFPPDTARVYQEEEYRVLTEGRP 496

Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
                   +  +G      +     P++   +   G   FG+               +  
Sbjct: 497 LLNKIEPYYDADG--QRGYVQTYKWPLFDEQKRVVGL--FGVSRDISEQVRNEEELAQHR 552

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV----------------SSLTE 245
                L   +    +V KE  +  +         M +++                  L  
Sbjct: 553 LHLEELVAERTEELAVAKESAEAANVAKSEFLANMSHEIRTPLNAISGMAHLIRRGGLAP 612

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
               + D L+     LL +  + L    D   I   +++ ++    +          L  
Sbjct: 613 EQMERLDRLELASEHLLETINAIL----DLSKIEAGKFSLEEAPLRVAGILDNVTAILQD 668

Query: 306 RNHPSLSAYFDEGENLTPETVD---KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEI 362
           R          E +   P  +            Y    + +   S  +  + + VD+   
Sbjct: 669 RAQAKHLQLSVESDPTLPPLLGDPVHLQQALLNYMSNAIKF-TESGRITLRARRVDE--- 724

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
                +LL   ++ D              +     A     +      L +         
Sbjct: 725 --DADSLLLRFEVEDTGIGIAPEHLPRLFSAFE-QADNSITRRYGGTGLGLAITRKIARL 781

Query: 423 QFPENMPQNGIEPEDV 438
              +    + +     
Sbjct: 782 VGGDAGASSVLGQGST 797



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 47/419 (11%), Positives = 106/419 (25%), Gaps = 47/419 (11%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT- 148
           D  G +   +    +  G  A + IG RL  +      +  ++   LL       GK   
Sbjct: 314 DLQGRVIYWNHASEQLYGWSAEEAIGQRLDRLI--FDREQTDNFTRLLDEVAA-SGKPIG 370

Query: 149 -----LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                +   +    +V   + ++P  S  +         +                 ++ 
Sbjct: 371 PAEYSIRTRDDELRWVEATMFSIPGESPEKPIL----VCMDVDITDRKQAEKELADFNRD 426

Query: 204 FSHLHEIKKGHSSVEKEKYDI----FSQQSPPPHLRMKNKVSSLTEYYAHKDDVL--KTE 257
           F             +  K        +      H   +  +          D     + E
Sbjct: 427 FEAFLNQTTDFVYFKDAKGCFRFCSQAMAEISGHASWREMIGKHDREIFPPDTARVYQEE 486

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
           +Y +LT     L + E ++  +  +   + Y   L +  K            S     +E
Sbjct: 487 EYRVLTEGRPLLNKIEPYYDADGQRGYVQTYKWPLFDEQKRVVGLFGVSRDISEQVRNEE 546

Query: 318 GENLTPETVDKCP------IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
                   +++        +     S      A   FL    ++    +    G++ L+ 
Sbjct: 547 ELAQHRLHLEELVAERTEELAVAKESAEAANVAKSEFLANMSHEIRTPLNAISGMAHLIR 606

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
              L+     +   L  +    +     +  +        ++   P   A          
Sbjct: 607 RGGLAPEQMERLDRLELASEHLLETINAILDLSKIEAGKFSLEEAPLRVA-------GIL 659

Query: 432 GIEPEDVDTRINKRKMEIEVM--------------QLCSILEATSDGIAIINREGIILS 476
                 +  R   + +++ V                  ++L   S+ I      G I  
Sbjct: 660 DNVTAILQDRAQAKHLQLSVESDPTLPPLLGDPVHLQQALLNYMSNAI-KFTESGRITL 717


>gi|254445464|ref|ZP_05058940.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
 gi|198259772|gb|EDY84080.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
          Length = 1321

 Score =  353 bits (906), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 122/566 (21%), Positives = 223/566 (39%), Gaps = 40/566 (7%)

Query: 280  LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG 339
                  +      Q+++         R   +      +  +LT  T+ K      V   G
Sbjct: 623  APNDLVEVVGLPQQSSTGLYLRNSKIRKTGATEPLQAQVLDLTENTLAKNLDGHLVKLEG 682

Query: 340  NLF----YANPSFLLLTK-YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394
             L     Y N   L++++   S++ I      S      +     ++  V     D    
Sbjct: 683  KLINLAYYQNEVHLIVSQNGASMEAIGKLSLSSPEFQNLQPGAIISLVGVYYLIYDEHSS 742

Query: 395  AASARLHTIQWNR----------------ENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
               A +   Q +                    + +        +       +   + E +
Sbjct: 743  PEKASILLRQPSDLQIIENAPWWTPKKTFGLIVLLVLAAVAGGSWTILLRNRVASQTEVI 802

Query: 439  DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
              ++    +         ++ + SD I  I+ +G  LS N+A   L GY  ED       
Sbjct: 803  REKMEHEALLEIQH--RQLVNSASDFIFTIDFQGRFLSYNKAGEDLTGYSSEDFKAIDIY 860

Query: 499  VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS--- 555
              +++    ++ + L           +        K+  L  + +    +   S      
Sbjct: 861  TIMDERHCLLVKNLLRR---RRSIPNISLEMQIRRKDGTLRWVEVSAGFIRNESEAVSAF 917

Query: 556  LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
              +HDI   K+ +  L+ AK+ AE+ +  KS FLA +SHE+RTP+  IIG +        
Sbjct: 918  GVIHDIEVRKKTEQNLTRAKEAAEENTRAKSAFLATMSHELRTPMNGIIGMT----GLLL 973

Query: 616  GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
                      +   I  S   +L ++ND+LD+SK E+GK+     P +L +AV++ ++L+
Sbjct: 974  ELELTRDARNFGETIRDSAASLLVLLNDILDLSKAEAGKLTFDPHPFNLRDAVNQTVTLL 1033

Query: 676  QLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
            +  AN K + + +     +P  +L D   ++Q+ LN++ NAI FT SG  + +S +  S+
Sbjct: 1034 ETTANSKNLELLSEIPEKLPDSLLGDAGRLRQVLLNLIGNAIKFTESG-HVKVSVSKISD 1092

Query: 735  EE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
            +        ++ DTG+G++     K  + F Q  NS   R  GTGLGL ++K +V    G
Sbjct: 1093 DNEKEIYRFQIMDTGIGISEKAKPKLFQSFEQADNSLARRFGGTGLGLKISKEIVTLMGG 1152

Query: 791  KFYIFSTPAKGTLIEIIFPL-YDTSH 815
            +  + ST  +G+      PL  +TS 
Sbjct: 1153 EIGMESTEGEGSTFWFTLPLKKETSQ 1178



 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/264 (14%), Positives = 75/264 (28%), Gaps = 27/264 (10%)

Query: 85   FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144
            F + ID  G     ++      G  +      +  D+  I+       + +LL+R+ +  
Sbjct: 826  FIFTIDFQGRFLSYNKAGEDLTGYSSEDF---KAIDIYTIMDERHCLLVKNLLRRRRSIP 882

Query: 145  GKTT---LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
              +    +   +GT     ++++A  I + +   S    FG++H   V         R  
Sbjct: 883  NISLEMQIRRKDGTLR--WVEVSAGFIRNESEAVS---AFGVIHDIEVRKKTEQNLTRAK 937

Query: 202  KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
            +        K    +    +          P   +      L E    +D     E    
Sbjct: 938  EAAEENTRAKSAFLATMSHELR-------TPMNGIIGMTGLLLELELTRDARNFGETIRD 990

Query: 262  LTS-EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
              +     L +  D       + T   +   L++   ++   L             +   
Sbjct: 991  SAASLLVLLNDILDLSKAEAGKLTFDPHPFNLRDAVNQTVTLLETT-------ANSKNLE 1043

Query: 321  LTPETVDKCPIPFFVYSHGNLFYA 344
            L  E  +K P        G L   
Sbjct: 1044 LLSEIPEKLPDSLL-GDAGRLRQV 1066



 Score = 42.7 bits (99), Expect = 0.23,   Method: Composition-based stats.
 Identities = 60/456 (13%), Positives = 111/456 (24%), Gaps = 69/456 (15%)

Query: 62  VSNTNYLDSENT-------FVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI 114
             N   LD  +T       F      R +R    +              +     +    
Sbjct: 513 PPNEKLLDVGSTVKLRGVLFTESNDRRQLRSILFVVPEKRF-------AEVKIPSSETPF 565

Query: 115 GMRLCDVSDILHIDPNNHIGDLLKRQNTWY----GKTTLWPIEGTNLYVP---------- 160
            + L +++      P +H     +   T       +T         L V           
Sbjct: 566 DLPLEELASFKRYQPLDHAKKFRRTSGTVVHYKDNRTLFLKDGPDVLRVLSHSDIKLAPN 625

Query: 161 --IDLAALPIYSRNREF--------SGFRGFGIVHVNRVDNDPRALGKR-----LDKKFS 205
             +++  LP  S    +        +G        V  +  +  A         L+ K  
Sbjct: 626 DLVEVVGLPQQSSTGLYLRNSKIRKTGATEPLQAQVLDLTENTLAKNLDGHLVKLEGKLI 685

Query: 206 HLHEIKKGHSSVEK------EKYDIFSQQSPPPHLRMKNKVSSL---------TEYYAHK 250
           +L   +     +        E     S  SP         + SL               K
Sbjct: 686 NLAYYQNEVHLIVSQNGASMEAIGKLSLSSPEFQNLQPGAIISLVGVYYLIYDEHSSPEK 745

Query: 251 DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310
             +L  +   L   E +     +    + +         G+     +      +      
Sbjct: 746 ASILLRQPSDLQIIENAPWWTPKKTFGLIVLLVLAAVAGGSWTILLRNRVASQTEVIREK 805

Query: 311 LSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVD--DIEIAGGLS 367
           +            + V+      F +   G     N +   LT Y S D   I+I   + 
Sbjct: 806 MEHEALLEIQH-RQLVNSASDFIFTIDFQGRFLSYNKAGEDLTGYSSEDFKAIDIYTIMD 864

Query: 368 TL-------LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
                    L   + S  N    + + R D T          I+   E   A   I   +
Sbjct: 865 ERHCLLVKNLLRRRRSIPNISLEMQIRRKDGTLRWVEVSAGFIRNESEAVSAFGVIHDIE 924

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
             +  E       E  + +TR     +     +L +
Sbjct: 925 VRKKTEQNLTRAKEAAEENTRAKSAFLATMSHELRT 960


>gi|332982124|ref|YP_004463565.1| PAS/PAC sensor signal transduction histidine kinase [Mahella
           australiensis 50-1 BON]
 gi|332699802|gb|AEE96743.1| PAS/PAC sensor signal transduction histidine kinase [Mahella
           australiensis 50-1 BON]
          Length = 430

 Score =  353 bits (906), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 92/402 (22%), Positives = 175/402 (43%), Gaps = 23/402 (5%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
              ++     +    IE    D    +++M     +L +I    + G+  +N    I + 
Sbjct: 47  LPISSSQSLQLLIYAIERWHKDIGHRQQEMLENNERLRAIFANATVGLIAVNERLHIEAV 106

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
           N    K+F    E    +     LE      +   +  ++      + +     ST  E 
Sbjct: 107 NHMACKMFDIDAEGAKGR---YILESIRNPHLESLVRYVVVNGEPLSSDIEL--STGNEL 161

Query: 538 LLSLRIIIKKLPFS-SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
           +L + I   K+    +   +++ DI+E K+                  K++ +A +SHEI
Sbjct: 162 ILRVSISPLKVDNRVNGAVISLEDITELKRL--------------DQVKAELVANMSHEI 207

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           +TPLT+I GF+E + +             +   ID   + +  ++ND L +S++ES   N
Sbjct: 208 KTPLTSIKGFAETLLDGAMD--DRETCRRFLTIIDSEADRMSRLINDSLTLSRLESQDRN 265

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716
           +  EP++L E +   + +V   A  K I +         +I  +   + Q+ LN++ NAI
Sbjct: 266 ISIEPINLHELIVNILDMVDSSAKTKNIDVTFYDQATDMKIDGNEDRMHQLMLNLIDNAI 325

Query: 717 HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
            +TPSGG++ I+      E+  + V+DTG+G+    + +  + F ++   +     GTGL
Sbjct: 326 KYTPSGGKVTITIK-DEGEDAFISVKDTGIGIAKEHMPRLFERFYRVDKGRSRNMGGTGL 384

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
           GL + K +V +  G   + S   +GT   +  P + ++HP D
Sbjct: 385 GLAIVKHVVMSMNGTIDVNSELGRGTEFIVRLPKHYSAHPSD 426


>gi|121602141|ref|YP_988756.1| putative non-motile and phage-resistance protein [Bartonella
           bacilliformis KC583]
 gi|120614318|gb|ABM44919.1| putative non-motile and phage-resistance protein [Bartonella
           bacilliformis KC583]
          Length = 773

 Score =  353 bits (905), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 124/509 (24%), Positives = 225/509 (44%), Gaps = 53/509 (10%)

Query: 339 GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398
           G + Y + +   +  Y   D +     ++ ++++  ++  +  + +M             
Sbjct: 282 GRI-YWSRAMYEMLGYVPQDALLSISQITAIINSTDINFFDLAQELM----SGEKKHIDI 336

Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458
            +  ++    + + M         + P      GI  +  +      +     +++   +
Sbjct: 337 NV-PMRHADGHHVWMRIRAEVTEEEEP---HLVGISFDISEQHQFVEQTAQADLRIRDAI 392

Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
           E  S+   + + EG ++ +N    +    P + +     +        ++    ++E   
Sbjct: 393 ENISESFVLWDSEGRLVMSNSKFCEYAAIPKQMLQ----SGIQRATVTAMARPAISEYFL 448

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK-------- 570
            +   T    ++  T +   L +    ++            DISE KQ++ K        
Sbjct: 449 KEDDGTGNLTSIRQTADGFWLKIN---ERRTQDGGLVCIGTDISELKQQQEKFEDSERRL 505

Query: 571 ---------------------------LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
                                      L   K+ AE  +  KS+FLA +SHE+RTPL AI
Sbjct: 506 FSFIQELKRARGNAQQRATEVEKLNKSLQAEKERAESANKAKSEFLANISHELRTPLNAI 565

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +GFS+++    FGPLG+ RY EY   I  SG  +L ++ND+LD+SKIE+G+  L  + V 
Sbjct: 566 LGFSDIMLQSTFGPLGSQRYEEYMRDIHNSGTHLLTLINDILDMSKIEAGRFTLDCKNVD 625

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
           L+  +SEAI  +   A EK+I I  + A  +     D R+++QI LN++SNA+ FTPSGG
Sbjct: 626 LEPIISEAIRTLTPQAQEKKISITANIAPKL-HAELDCRAMRQIFLNLISNAVKFTPSGG 684

Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
            I I         +I +++DTGVG+    ++K  KPF Q+ N       G+GLGL ++++
Sbjct: 685 SIDI-CAFQKKNNLIFKIKDTGVGIPQSAIKKLGKPFEQVENQFTKTHTGSGLGLAISRS 743

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
           +++ + GK  I S    GT + I  P+  
Sbjct: 744 LLELHKGKLEIASEEENGTTVTITIPIKQ 772


>gi|259416961|ref|ZP_05740881.1| multi-sensor hybrid histidine kinase [Silicibacter sp. TrichCH4B]
 gi|259348400|gb|EEW60177.1| multi-sensor hybrid histidine kinase [Silicibacter sp. TrichCH4B]
          Length = 826

 Score =  353 bits (905), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 110/558 (19%), Positives = 210/558 (37%), Gaps = 64/558 (11%)

Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDD----IEIAGGL 366
                      + E V   P+       G +      F + T           +      
Sbjct: 137 AQREAVMRMRDSGEIVLAGPVNLVQGGTGFII----RFPVFTGEGEDRAFWGMVAAVIDA 192

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTC---------------------------IAASAR 399
             L     L   +    + L   D T                                A 
Sbjct: 193 DALYQGAGLHQADLPVEIALSGRDGTGHQGGVFYGDPAIHDYGPMVMDVILPTGTWELAA 252

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP-------EDVDTRINKRKMEI--- 449
           +    W +E                   +P                  R  ++++E    
Sbjct: 253 IPRGGWPKEPGNLWKLRLVLIVAGILIIVPTFMACRLSAVRRSTIKTLRKREQELERHQV 312

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL--EQNTPS 507
           E+ QL ++ +  SD I +   +  +   N A +++ GY ++D + K     L   +  P 
Sbjct: 313 ELEQLSTVAQNASDSIILSGPDLRVFWVNDAFTRMTGYTIDDAIGKRPGDLLNGPETDPE 372

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISE 563
            +      I   +    L +  L  TK+   + +   +  +   +           D++ 
Sbjct: 373 TIRDIAEHIARGER---LHREILNYTKDGDTIWVDTNLVPVLNENGDMRMVIGIERDVTS 429

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            K+   +L+ AK+ AE+    K++FLA +SHEIRTP+  IIG ++++             
Sbjct: 430 QKRNAVELAEAKRAAEEADRTKTEFLANMSHEIRTPMNGIIGMADLLSETAL----PEEQ 485

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            +Y   I  S   +L I+ND+LD++++ESGK++L      L+  +  A+ +++  A EK 
Sbjct: 486 EQYVQIIRTSSKALLKIINDILDLTRMESGKLSLEPVDFDLERCIESAVDILRPVAREKG 545

Query: 684 ILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVILRV 741
           + +  ++A ++P+ + AD   V+QI +N++ NA+ FT SG   + +    +    + + V
Sbjct: 546 LTLNVNYATDLPKSVRADDGRVRQILVNLVGNAVKFTASGRVDVRVLRAQSDPYRLTIDV 605

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
           +D+G+GM+  +L      F Q   +      GTGLGL +++ +     G   + S P +G
Sbjct: 606 QDSGIGMSQAQLNNIFDRFSQADAATTRSFGGTGLGLTISRLLAQQMQGDITVHSEPGQG 665

Query: 802 TLIEIIF----PLYDTSH 815
           +   +      PL     
Sbjct: 666 SCFSLYIQCDAPLGQPEQ 683



 Score = 55.0 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/105 (14%), Positives = 34/105 (32%), Gaps = 6/105 (5%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTWYGKT 147
                +  +++   +  G      IG R  D+ +    DP     I + + R    + + 
Sbjct: 332 GPDLRVFWVNDAFTRMTGYTIDDAIGKRPGDLLNGPETDPETIRDIAEHIARGERLHREI 391

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192
             +  +G    + +D   +P+ + N +       GI         
Sbjct: 392 LNYTKDGDT--IWVDTNLVPVLNENGDMRMV--IGIERDVTSQKR 432



 Score = 46.9 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 37/321 (11%), Positives = 78/321 (24%), Gaps = 23/321 (7%)

Query: 126 HIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVH 185
           +      +  +                 GT   +       P+++   E   F G     
Sbjct: 135 NDAQREAVMRMRDSGEIVLAGPVNLVQGGTGFIIRF-----PVFTGEGEDRAFWG----- 184

Query: 186 VNRVDNDPRALGK-RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244
           +     D  AL +     +     EI          +  +F    P  H      +  + 
Sbjct: 185 MVAAVIDADALYQGAGLHQADLPVEIALSGRDGTGHQGGVFYG-DPAIHDYGPMVMDVIL 243

Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
                +   +    +P        L        I          F   + ++       +
Sbjct: 244 PTGTWELAAIPRGGWPKEPGNLWKL----RLVLIVAGILIIVPTFMACRLSAVRRSTIKT 299

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIA 363
            R                            +      +F+ N +F  +T Y   D I   
Sbjct: 300 LRKREQELERHQVELEQLSTVAQNASDSIILSGPDLRVFWVNDAFTRMTGYTIDDAIGKR 359

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
            G   LL+ P+  D   I+ +  + +    +     +     + +    +        N+
Sbjct: 360 PG--DLLNGPET-DPETIRDIAEHIARGERLHRE--ILNYTKDGDTI-WVDTNLVPVLNE 413

Query: 424 FPENMPQNGIEPEDVDTRINK 444
             +     GIE +    + N 
Sbjct: 414 NGDMRMVIGIERDVTSQKRNA 434


>gi|120553191|ref|YP_957542.1| PAS/PAC sensor signal transduction histidine kinase [Marinobacter
           aquaeolei VT8]
 gi|120323040|gb|ABM17355.1| PAS/PAC sensor signal transduction histidine kinase [Marinobacter
           aquaeolei VT8]
          Length = 484

 Score =  353 bits (905), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 99/490 (20%), Positives = 189/490 (38%), Gaps = 42/490 (8%)

Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGG---------LSTLLDAPKLSDNNAIKP 383
             +   G +   N +  +L  +   + ++                L         +    
Sbjct: 22  VLLRPDGVVEDWNSAAEILLGFTREEAVQQPLADLIELTDSEHRALTLDFGDCGRSLSTQ 81

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
            +                 +    ++ +                                
Sbjct: 82  GLCRSKKGQSFPVEVVCSPVDVQGDSLVVTLIRDV------------------------- 116

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
             +++    +   +LE+  D I I+ + G I+  N     LFGY  ++++ +   + + +
Sbjct: 117 -SELKRAEQKFRGLLESAPDAIVIVKQGGRIVLVNSQAESLFGYHRDEMIGQNVEILMPE 175

Query: 504 NTPSVMNHYLTEILSLDLRQTLEK--ITLGSTKEEKLLSLRIIIKKLPFSSCYSLT--MH 559
                   +          + +       G  K      + I +  L       ++  + 
Sbjct: 176 RYRGQHIGHRDGFFKDPRVRPMGMGLELFGLRKGGIEFPIEISLSPLETEEGILVSSAIR 235

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           DI+E K+ +  L    +     +  K  FLA +SHE+RTPL AIIGF+  +     GPL 
Sbjct: 236 DITERKRFERALQDKNQELATANKAKDQFLASMSHELRTPLNAIIGFTGTLLMGLPGPL- 294

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
           N    +    +  S   +L ++NDLLD++KI++GK+ L  E ++L++ + E      L A
Sbjct: 295 NDDQKKQLGTVRSSAQHLLSLINDLLDVAKIDAGKLELKPENINLNQLLEEIHGTFSLQA 354

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
            EK + +     +    +  D R++ QI +N++SN + FT  GG + ++    + + V +
Sbjct: 355 REKALELGLQLPDQPVNLETDRRALSQIVMNLISNGLKFTHEGG-VYVTLVRPNPQSVHV 413

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            VRDTG G+     E   +PF +   S   R EGTGLGL L++ + +   G   +  + A
Sbjct: 414 CVRDTGPGIDTSAQENLFQPFSRGVLS-SRRTEGTGLGLYLSQKLANQLGGNIQLQRSDA 472

Query: 800 KGTLIEIIFP 809
            G+   +  P
Sbjct: 473 SGSEFLLSLP 482



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 54/141 (38%), Gaps = 8/141 (5%)

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
             + +E+E   +     + +D + ++  +G++   N A   L G+  E+ +++P    +E
Sbjct: 2   EHQTVEMETATMRP---SPADAVVLLRPDGVVEDWNSAAEILLGFTREEAVQQPLADLIE 58

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI--IIKKLPFSSCYSLTMHD 560
                     L      D  ++L    L  +K+ +   + +      +   S     + D
Sbjct: 59  LTDSEHRALTLDF---GDCGRSLSTQGLCRSKKGQSFPVEVVCSPVDVQGDSLVVTLIRD 115

Query: 561 ISEWKQEKNKLSHAKKIAEKE 581
           +SE K+ + K     + A   
Sbjct: 116 VSELKRAEQKFRGLLESAPDA 136



 Score = 41.9 bits (97), Expect = 0.39,   Method: Composition-based stats.
 Identities = 20/251 (7%), Positives = 60/251 (23%), Gaps = 19/251 (7%)

Query: 93  GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP- 151
           G +  ++ +     G +  +MIG        +  + P  + G  +  ++ ++    + P 
Sbjct: 144 GRIVLVNSQAESLFGYHRDEMIGQN------VEILMPERYRGQHIGHRDGFFKDPRVRPM 197

Query: 152 --------IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                   +    +  PI+++  P+ +             +             +  +++
Sbjct: 198 GMGLELFGLRKGGIEFPIEISLSPLETEEGILV----SSAIRDITERKRFERALQDKNQE 253

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
            +  ++ K    +    +              +   +         K           L 
Sbjct: 254 LATANKAKDQFLASMSHELRTPLNAIIGFTGTLLMGLPGPLNDDQKKQLGTVRSSAQHLL 313

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
           S  + L +        L    +      L      +F   +      L     +      
Sbjct: 314 SLINDLLDVAKIDAGKLELKPENINLNQLLEEIHGTFSLQAREKALELGLQLPDQPVNLE 373

Query: 324 ETVDKCPIPFF 334
                      
Sbjct: 374 TDRRALSQIVM 384


>gi|315644224|ref|ZP_07897394.1| multi-sensor signal transduction histidine kinase [Paenibacillus
           vortex V453]
 gi|315280599|gb|EFU43888.1| multi-sensor signal transduction histidine kinase [Paenibacillus
           vortex V453]
          Length = 609

 Score =  353 bits (905), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 82/373 (21%), Positives = 155/373 (41%), Gaps = 24/373 (6%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           R    + E E  +L SIL   SDG+   +  G ++  NR   ++ G   E++        
Sbjct: 250 REALSQNEEEKEKLASILTNMSDGVIATDEAGRVILMNRRAGEMLGVEGEELAGHDIVSL 309

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL-SLRIIIKKLPFSS--CYSLT 557
           L              +   +   +     +     E  +  +                  
Sbjct: 310 LGLEESES-----EALARSEGHDSKLLEIVPREGSEPFMMRVTFTPIHRREIGITGTIAV 364

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
           + D++E ++ +              + + +F+A VSHE+RTPLT I  ++E +++     
Sbjct: 365 LQDVTEQEKLE--------------ASRREFVANVSHELRTPLTTIKSYTEALEDGAL-- 408

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
                   +   I      ++ +V DLL +S+++S +  LH EP  + E + +       
Sbjct: 409 EDKQMGPRFVGVIQNETGRMIRLVTDLLHLSRLDSKEAALHKEPTDIVEMLEDVEDRFSF 468

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737
              +K I         +   + D   + Q+  N++SNA+ +TP GG I +  + T    +
Sbjct: 469 QMKQKHIRTIIEVKPGVSTAMLDRDGIDQVLDNLISNALKYTPDGGTITMDASITEEGML 528

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
            L V+DTG+G+   +L++  + F ++  ++     GTGLGL +A+ +V A+ G   + S 
Sbjct: 529 SLSVKDTGIGIPKKDLDRIFERFYRVDKARTRNLGGTGLGLSIAREIVRAHGGFITLQSE 588

Query: 798 PAKGTLIEIIFPL 810
             KGT +    PL
Sbjct: 589 LEKGTTVTFTLPL 601



 Score = 45.0 bits (105), Expect = 0.051,   Method: Composition-based stats.
 Identities = 18/147 (12%), Positives = 44/147 (29%), Gaps = 7/147 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            D  G +  ++    + +G    ++ G    D+  +L ++ +       + +        
Sbjct: 277 TDEAGRVILMNRRAGEMLGVEGEELAGH---DIVSLLGLEESESEALA-RSEGHDSKLLE 332

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           + P EG+     + +   PI+ R    +G     ++          A  +      SH  
Sbjct: 333 IVPREGS-EPFMMRVTFTPIHRREIGITGT--IAVLQDVTEQEKLEASRREFVANVSHEL 389

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLR 235
                      E  +  + +      R
Sbjct: 390 RTPLTTIKSYTEALEDGALEDKQMGPR 416



 Score = 40.4 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/151 (7%), Positives = 32/151 (21%), Gaps = 16/151 (10%)

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIA 363
                   +  +E +      +             G +   N     +   +  +++   
Sbjct: 246 TSRLREALSQNEEEKEKLASILTNMSDGVIATDEAGRVILMNRRAGEMLGVEG-EELAGH 304

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
             +S L            +   L RS+         L  +         M         +
Sbjct: 305 DIVSLL-------GLEESESEALARSEGHDSKL---LEIVPREGSEPFMMRVTFTPIHRR 354

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
                    +  +  +      K+E    + 
Sbjct: 355 EIGITGTIAVLQDVTEQ----EKLEASRREF 381


>gi|327539316|gb|EGF25937.1| sensory box histidine kinase/response regulator [Rhodopirellula
           baltica WH47]
          Length = 843

 Score =  353 bits (905), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 99/511 (19%), Positives = 199/511 (38%), Gaps = 42/511 (8%)

Query: 338 HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397
            G   +AN S+L        +    AG     L  P+++         + ++  +  +  
Sbjct: 30  DGRRVFANDSYLKWRGVTWQEL---AGKHDEDLFPPEIARKYREDDQKVMQTGESLHSVE 86

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
               + +   ++   +  +     +     +    +  +       ++  + E   L ++
Sbjct: 87  ----SAKLADDSIGWIERVKTAVHDHHGNLLGVQVLFWDVTAKVEEEKATQFEQSLLKTL 142

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           L    D I   + +   +  + A++  FG   V+++  +                    +
Sbjct: 143 LANIPDSIYFKDIDSRFIRVSHAMAMKFGRASVDEVHGRTDADIFTPEHAEGARLDELRV 202

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLS 572
           +                 + +          L   +           DI++ K+ +  L 
Sbjct: 203 IETGEALVDRVERET-WPDREDTWCMTTKMPLRNDTGEIIGTFGISRDITDLKRSEAALH 261

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
            A ++A+  +  KS+FLA +SHEIRTP+ A+IG ++++   +     +P   +Y   I  
Sbjct: 262 EAVRMADAANRSKSEFLANMSHEIRTPMNALIGMADLLSQTKL----DPDQQDYVQIIQE 317

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
           S N +L ++ND+LD SKIE+ ++ L   P SL + +   +      A+EK + ++   + 
Sbjct: 318 SSNGLLRLINDILDFSKIEARRLELESVPFSLGKTIESTLRSFSFKASEKGLELQRDISP 377

Query: 693 NIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI----------------------IIST 729
            +P  ++ D   V+Q+  N++ NAI FT  GG                          S 
Sbjct: 378 ELPDRLIGDPGRVRQVLTNLIGNAIKFTDHGGVRVRVEVLRREERADRDLAATHSGRESP 437

Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
                 E+ L V D+G+G+   + +  + PF Q   S   R  GTGLGL +++ +V+   
Sbjct: 438 ERDDMVELRLSVCDSGIGIPPAQQDAVLNPFTQADASTTRRFGGTGLGLSISRQLVELMG 497

Query: 790 GKFYIFSTPAKGTLIEIIF--PLYDTSHPHD 818
           G+ ++ S    GT        P+   S P++
Sbjct: 498 GELHLQSEVGVGTTFSFQLKMPVCPASMPNE 528



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 27/259 (10%), Positives = 64/259 (24%), Gaps = 23/259 (8%)

Query: 90  DAHGYLKEISEELPKTIGN-YAFKMIGMRLCDVSDILHIDPNN-HIGDLLKRQNTWYGKT 147
           D       +S  +    G     ++ G    D+    H +        +++       + 
Sbjct: 154 DIDSRFIRVSHAMAMKFGRASVDEVHGRTDADIFTPEHAEGARLDELRVIETGEALVDRV 213

Query: 148 TL--WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
               WP              +P+ +   E  G   FGI           A      +   
Sbjct: 214 ERETWP---DREDTWCMTTKMPLRNDTGEIIGT--FGISRDITDLKRSEAALHEAVRMAD 268

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
             +  K    +    +          P   +      L++     D     +     ++ 
Sbjct: 269 AANRSKSEFLANMSHEIR-------TPMNALIGMADLLSQTKLDPDQQDYVQIIQESSNG 321

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
              L    D    +  +  + +      +  K     L   +  +     +   +++PE 
Sbjct: 322 --LLRLINDILDFSKIEARRLELESVPFSLGKTIESTLRSFSFKASEKGLELQRDISPEL 379

Query: 326 VDKCPIPFFVYSHGNLFYA 344
            D+      +   G +   
Sbjct: 380 PDRL-----IGDPGRVRQV 393



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/245 (8%), Positives = 63/245 (25%), Gaps = 7/245 (2%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTWYGKTTL 149
           A G     ++   K  G    ++ G    D+               +++   + +   + 
Sbjct: 29  ADGRRVFANDSYLKWRGVTWQELAGKHDEDLFPPEIARKYREDDQKVMQTGESLHSVESA 88

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRG-FGIVHVNRVDNDPRALGKRLDKKFSHLH 208
              + +     I+     ++  +    G +  F  V     +       + L K      
Sbjct: 89  KLADDSIG--WIERVKTAVHDHHGNLLGVQVLFWDVTAKVEEEKATQFEQSLLKTLLANI 146

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY---AHKDDVLKTEKYPLLTSE 265
                   ++     +    +        ++V   T+         +  + ++  ++ + 
Sbjct: 147 PDSIYFKDIDSRFIRVSHAMAMKFGRASVDEVHGRTDADIFTPEHAEGARLDELRVIETG 206

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
           E+ +   E     +            L+N++ E           +     +   +     
Sbjct: 207 EALVDRVERETWPDREDTWCMTTKMPLRNDTGEIIGTFGISRDITDLKRSEAALHEAVRM 266

Query: 326 VDKCP 330
            D   
Sbjct: 267 ADAAN 271


>gi|325293689|ref|YP_004279553.1| two component sensor kinase/response regulator hybrid
           [Agrobacterium sp. H13-3]
 gi|325061542|gb|ADY65233.1| two component sensor kinase/response regulator hybrid
           [Agrobacterium sp. H13-3]
          Length = 1223

 Score =  353 bits (905), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 138/773 (17%), Positives = 259/773 (33%), Gaps = 59/773 (7%)

Query: 90  DAHGYLKEISEELPKTI---------GNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ 140
           D    L   +    +           G     ++               +      L++Q
Sbjct: 149 DRENRLVYCNARFVEFYSDFNLQLKPGTRLETLMEAVYFSSGYRSVKSDDPDYQAWLQKQ 208

Query: 141 NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
              +    L  +E       + +    +   N    G R    V   +      +   R 
Sbjct: 209 LRDFSLPYLERVEQFADGRWVRMVNKRL--ENGMLVGLR--VDVTEFKAHETLLSKQIRE 264

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR---MKNKVSSLT-EYYAHKDDVLKT 256
                   E       +  +   +    +     R   + + +     E +  +    + 
Sbjct: 265 TWLLRAALEQLPVGVFLRDQDRRLTFANAAFEKFRGGSLADYLGKTECEMFPEEGAEFQR 324

Query: 257 EKYPLLTSEES--SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR-------N 307
           E   +L + E+              +   T+     T  +                    
Sbjct: 325 ENEHILQTGEAIEKTGTIPLSDGGAVPVITRLGRVTTPDDEYYLVGSVTDVSLLKERENA 384

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVD-------- 358
             +  A  +         +   P+   + +    + Y NP F  L      +        
Sbjct: 385 LIAAQAQAEALHRQFETVLHALPVGVLLLNADLVIEYVNPCFDTLWGEIGGEKSLVGKSY 444

Query: 359 -DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
            +   A   S L D      +   + +   R+DR           ++        ++   
Sbjct: 445 REFMEANFESGLYD----YGDIPFEELYNQRADRLLNDKVFTPREVRSKSGKVTVISKTR 500

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
            +             +   D +    K ++E     +     A + G+ ++  +G I+ +
Sbjct: 501 LDGGKILSTYADVTDVRMRDAEISEAKAELERVGEYMQGATRAMAQGLVLV-EQGTIIMS 559

Query: 478 NRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE------KITL 530
           N AV+++F  P + +     ++ F              E  +                 L
Sbjct: 560 NEAVARMFDVPPQLLEKGCNWSGFFAHCAGRGDFGTKEEAAATLTAWREHIAANRPFSWL 619

Query: 531 GSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
                +  L+L          + + + + D++E K  + +L      AE     KS+FLA
Sbjct: 620 IHIAGKTWLNLEAT---NSSGNYWLIIVTDVTEMKMREEELQRLLSRAEAADRAKSEFLA 676

Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650
            +SHEIRTP+  ++G +E++           R   + + I +SGN +L I+ND+LD SKI
Sbjct: 677 NMSHEIRTPMNGVLGMAELLAKSNLDT----RQKTFTDIIVKSGNALLTIINDILDFSKI 732

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIAL 709
           E+G+M L   P    EAV + +SL+   A EK I +      ++  +++ D    +Q+  
Sbjct: 733 EAGQMKLRSVPFDPAEAVEDVVSLLSSAALEKNIELVVRIDPSVFGKVMGDAGRFRQVVT 792

Query: 710 NILSNAIHFTPSGGQ-IIISTTHTSNEE--VILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
           N++ NA+ FT  G   I +S       E  + LRV D+G+G+   +LE     F Q+  S
Sbjct: 793 NLVGNAVKFTEMGHVLIELSAQSAEASETILSLRVEDSGIGIPADKLETIFDKFSQVDGS 852

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819
              R EGTGLGL +   +V    G   + S   KG+  E+  P + T    D 
Sbjct: 853 ATRRHEGTGLGLAITVGLVGLFDGTINVVSEVGKGSTFEVNIPFHVTEKRRDA 905



 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/283 (8%), Positives = 77/283 (27%), Gaps = 38/283 (13%)

Query: 324 ETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
             +    +P  +          N ++  +                +        ++   +
Sbjct: 13  GAIAALDLPACIKDSELRYLMVNAAYGRVMGRPPAAFTGHTSLALSADIRDAEREDRERR 72

Query: 383 PVMLYRSD-----RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
            ++    +         +   +L   ++  ++     F  FE+     + +   G     
Sbjct: 73  SLVFATDEVISCHGAASSGPYKLRCERFTGDDGSLFLFEVFEEVPSVVKGVSDGGSADLL 132

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF-GYPVEDILRKP 496
            D+                +++    GI I +RE  ++  N    + +  + ++      
Sbjct: 133 FDSG---------------VIDLIDAGIVIYDRENRLVYCNARFVEFYSDFNLQLKPGTR 177

Query: 497 FTVFLEQ-----------NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
               +E            +       +L + L       LE+  +    + + + +   +
Sbjct: 178 LETLMEAVYFSSGYRSVKSDDPDYQAWLQKQLRDFSLPYLER--VEQFADGRWVRM---V 232

Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
            K   +        D++E+K  +  LS   +      +     
Sbjct: 233 NKRLENGMLVGLRVDVTEFKAHETLLSKQIRETWLLRAALEQL 275


>gi|144900521|emb|CAM77385.1| PAS [Magnetospirillum gryphiswaldense MSR-1]
          Length = 815

 Score =  353 bits (905), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 132/508 (25%), Positives = 230/508 (45%), Gaps = 25/508 (4%)

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEI 362
           S R     +  ++E        V++ P+   +    G + Y NP+F  +T Y   + +  
Sbjct: 318 SLRRSERRAVLWEEEARKLFRAVEQSPVSVLISDAQGLIEYINPAFSAMTGYHRDEVL-- 375

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
             G S  +     +       +    S                   +    +       +
Sbjct: 376 --GHSPRMLRSDQTPPEVFADLWASISAGQEWRGEIVNQR---KDGSVYWESMTVAPVKD 430

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
              +       + +  + R  +  +E+E   L  I  +T D IA+++ +G     N A+ 
Sbjct: 431 GDGKVDSFIAFKEDVTEIRSLRLALELEHANLRRIFASTKDLIALVSTDGRFEYANPALV 490

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
             FG                      ++++   I +L    T  +    S    K     
Sbjct: 491 DTFG---------------PVMGVRTIDYFQPAIANLGDDNTATRGEWVSDLNGKTYEFS 535

Query: 543 IIIKKLPFSS-CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
           I     P       L +HDI+  KQ +  ++ A++ AE  +  K++FLA +SHE+RTPL 
Sbjct: 536 ITPVDTPHGEMSALLALHDITTRKQAELAMAEAREAAELSNRAKTEFLATMSHELRTPLN 595

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           AIIGFSE+I+N+  GP+   +Y +YA+ I+ SG  +L ++ND+LD++++E G+  L    
Sbjct: 596 AIIGFSEIIENELLGPVETKQYRDYAHDINESGRHLLTLINDILDVARLEVGRFALMESE 655

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           + + + +  ++ LV   A    + I     + +P ++ D R +KQ   NILSNA+ FT +
Sbjct: 656 MDVGQTIRASVQLVGERAKAAGLRIGEQIPDGLPWLMGDERRIKQTIANILSNAVKFTSA 715

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
            G++ + T  T    + + V DTG+G+   ++ K M PFGQ  +S   R +G GLGLPLA
Sbjct: 716 DGRVTV-TAKTDENGLDIVVSDTGIGIHADDMTKIMAPFGQAESSLSRRFDGAGLGLPLA 774

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +  +D + G   I STP +GT++ + FP
Sbjct: 775 RRFMDMHGGTLSISSTPGQGTVVNLHFP 802



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 25/180 (13%), Positives = 57/180 (31%), Gaps = 9/180 (5%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL---LKRQNTWYGK 146
           DA G ++ I+       G +  +++G     +       P     DL   +     W G+
Sbjct: 351 DAQGLIEYINPAFSAMTGYHRDEVLGHSPRML--RSDQTPPEVFADLWASISAGQEWRGE 408

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFG-IVHVNRVDNDPRALGKR-LDKKF 204
                 +G+  +  + +A  P+   + +   F  F   V   R       L    L + F
Sbjct: 409 IVNQRKDGSVYWESMTVA--PVKDGDGKVDSFIAFKEDVTEIRSLRLALELEHANLRRIF 466

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
           +   ++    S+  + +Y   +       +     +       A+  D     +   ++ 
Sbjct: 467 ASTKDLIALVSTDGRFEYANPALVDTFGPVMGVRTIDYFQPAIANLGDDNTATRGEWVSD 526


>gi|33415350|gb|AAQ18202.1| hypothetical protein csv012 [uncultured bacterium]
          Length = 1248

 Score =  353 bits (905), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 119/640 (18%), Positives = 231/640 (36%), Gaps = 49/640 (7%)

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
             + S    I   H ++E       +    P    +  K+  L          ++  +  
Sbjct: 293 ASRISSGVAITDRHGTIEWINSAFVALTGWPEDKVLGRKLGELLAQEVSAPTTVRELEDH 352

Query: 261 LLTSEESSLPEQEDFHT-INLNQYTKKQYFGTLQNNSKESFEYL----SHRNHPSLSAYF 315
           L       L  +        + +Y  +     + + +    +Y+          +     
Sbjct: 353 LARGVPFRLSYEAARQGGQLITRYWGEIDAIQMLDETGGRSQYVCLFNDITKRKAQEHVR 412

Query: 316 DEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
           D+        +   P+  FV    + N+   N    +  K +    +  +          
Sbjct: 413 DQEREFLEALLGNLPVSLFVLDPVNLNVVAINRYTEIEFKLQRDQVVGKSI--------- 463

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN-----RENSLAMTFIPFEKANQFPENM 428
                 A+   +L  ++     A     TI+ +           +    F   +      
Sbjct: 464 ----TQALGESVLKLTEGPMQEALETGQTIEHDFEWQNASQQRIVNARHFALRHSNGRPR 519

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGY 487
               +  +    R ++  +E    +   ++E+  DG+ + +      L  +     L+G 
Sbjct: 520 LLISLVRDITSARQSQADLEESERRFRELVESMDDGVYVASEHRANYLYLSHRTQDLWGV 579

Query: 488 PVEDILRKP--FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
             EDI   P      +      ++      +   D             K  + L  R   
Sbjct: 580 SAEDIQAHPARLKSLVLPEDQHLLAEQ-EALEDQDQPTDTLLRLQHPDKGLRFLRHRTRA 638

Query: 546 KKLPFSS-CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
           ++LP         + D+++   +  +L  A+ +AE  S  KS F+A +SHEIRTP+  I+
Sbjct: 639 RRLPDGQSRIYGLVSDVTDEHGQALELQRARDLAEAASQAKSQFMANMSHEIRTPMNGIL 698

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           G +E++         N +   +A  + RSG  +L+I+ND+LD +KIE+G++ L      L
Sbjct: 699 GMTELLLGTPL----NDKQRRFAQAVYRSGESLLEIINDILDFAKIEAGRLELATCDFVL 754

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGG 723
              V + + L+   A+EK + +       +P +   D   ++QI  N+++NAI FT  G 
Sbjct: 755 RTLVEDTLELMAPRAHEKGLELSFREQPGLPSVIHGDPLRLRQILTNLVANAIKFTEHG- 813

Query: 724 QIIISTTHTSNE-------------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           +I++                     E+   VRDTG+G+    + +    F Q       R
Sbjct: 814 EIVVDIRRAIGGAVELPKPGSLETMELEFMVRDTGIGIPAEVVPRLFSAFVQANGGMARR 873

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             GTGLGL ++K +V+   G+  + S P  G+      P+
Sbjct: 874 YGGTGLGLAISKQLVELMGGQIEVNSAPGVGSEFLFRVPV 913



 Score = 75.8 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 45/382 (11%), Positives = 108/382 (28%), Gaps = 24/382 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP--NNHIGDLLKRQNTWYGK 146
            D HG ++ I+       G    K++G +L ++       P     + D L R   +   
Sbjct: 303 TDRHGTIEWINSAFVALTGWPEDKVLGRKLGELLAQEVSAPTTVRELEDHLARGVPFR-L 361

Query: 147 TTLWPIEGTNL--YVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR-ALGKRLDKK 203
           +     +G  L      ++ A+ +       S +    + +             +  +  
Sbjct: 362 SYEAARQGGQLITRYWGEIDAIQMLDETGGRSQY--VCLFNDITKRKAQEHVRDQEREFL 419

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPH--LRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
            + L  +      ++    ++ +            +++V   +   A  + VLK  + P+
Sbjct: 420 EALLGNLPVSLFVLDPVNLNVVAINRYTEIEFKLQRDQVVGKSITQALGESVLKLTEGPM 479

Query: 262 LTSEESSLPEQEDFHTINLN-QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY----FD 316
             + E+    + DF   N + Q         L++++      +S     + +       +
Sbjct: 480 QEALETGQTIEHDFEWQNASQQRIVNARHFALRHSNGRPRLLISLVRDITSARQSQADLE 539

Query: 317 EGENLTPETVDKCPIPFFVYSHGN--LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
           E E    E V+      +V S       Y +     L    + D       L +L+    
Sbjct: 540 ESERRFRELVESMDDGVYVASEHRANYLYLSHRTQDLWGVSAEDIQAHPARLKSLVLPED 599

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
                  + +     +         L     +    L                    G+ 
Sbjct: 600 QHLLAEQEAL-----EDQDQPTDTLLRLQHPD--KGLRFLRHRTRARRLPDGQSRIYGLV 652

Query: 435 PEDVDTRINKRKMEIEVMQLCS 456
            +  D      +++       +
Sbjct: 653 SDVTDEHGQALELQRARDLAEA 674


>gi|332701627|ref|ZP_08421715.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332551776|gb|EGJ48820.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 847

 Score =  353 bits (905), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 118/569 (20%), Positives = 210/569 (36%), Gaps = 30/569 (5%)

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
            + E    + ++    P      +      + +       N    +           +  
Sbjct: 145 REPELIEAIAAQHHVDPTHLHALSAVYTPRSPEIIEAAKANLRASAMLMGEILERRMVEE 204

Query: 314 YFDEGENLTPETVDKCPIPFFVY--SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
                +          PI   +     G+    N + L +T +   + I        +  
Sbjct: 205 ELRASKEKYRAVFRTNPILTLIASLDDGHCLEVNEALLQMTGFSREELIGNRIQDLGIWT 264

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
            P  SD        L++  +T      +   I+        + F    +       +   
Sbjct: 265 DPSASDA-------LHQQLKTQGHFEMKEIQIRSKFSEHKTLLFSAETRELHGRPCIIAA 317

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
           G   +  +    +R +     +   +L  T+DGI   N   + +  +    ++ GY   +
Sbjct: 318 G--QDITERNERERLLRESEERYALVLNGTNDGIWDWNLRTMQVYFSPRWKEIIGYRDAE 375

Query: 492 ILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
           I    + +   +       +          +     E       K+     +      L 
Sbjct: 376 IRNDLEEWKSRIHPEEFDNVMATHERFFRAEDP-VFEVEYRLRHKDGSYRWILGRGACLR 434

Query: 550 FSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
             S      + +  D++  KQ + +LS AK+ AE+ S  KS+FLA +SHEIRTPL+ ++G
Sbjct: 435 DQSGKPYRMAGSHTDMTRRKQIEAELSKAKEDAERASKAKSEFLANMSHEIRTPLSGMLG 494

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
            +E+       P       E+      SG  +L I+ND+LD+SKIE+G+ NL  +  SL 
Sbjct: 495 MTELAMMNELTP----EVREHLQMARDSGKSLLAIINDVLDLSKIEAGRSNLEQKKFSLR 550

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ 724
           E     I  + + A  K + I  +     P  +L D   ++QI  N++ NA+ FT  G  
Sbjct: 551 ELADSTIKSLAVSAKAKGLRIFHAVDTEAPDSLLGDPGRLRQILTNLIGNALKFTERG-T 609

Query: 725 IIISTTHT----SNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
           + +S T         ++ LR  V+DTG+G+    LE   K F Q   S      GTGLGL
Sbjct: 610 VTVSMTADAVDAPAGKITLRTVVKDTGIGIPESMLEDIFKSFNQGVTSAHATYGGTGLGL 669

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEII 807
            ++K +V+   G+ +  S    G+     
Sbjct: 670 TISKELVEMMGGRIWAESRMGHGSAFHFT 698



 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/266 (9%), Positives = 73/266 (27%), Gaps = 23/266 (8%)

Query: 84  RFTWNIDA---------HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG 134
           R  +  +           G+  E++E L +  G    ++IG R+ D+        ++ + 
Sbjct: 214 RAVFRTNPILTLIASLDDGHCLEVNEALLQMTGFSREELIGNRIQDLGIWTDPSASDALH 273

Query: 135 DLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRG-FGIVHVNRVDNDP 193
             LK Q  +  K      + +  +  +  +A       RE  G              N+ 
Sbjct: 274 QQLKTQGHFEMKEIQIRSKFS-EHKTLLFSA-----ETRELHGRPCIIAAGQDITERNER 327

Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEK-EKYDIFSQQSPPPHLRMKNKVSSLTEYY----- 247
             L +  +++++ +                 ++        +  ++              
Sbjct: 328 ERLLRESEERYALVLNGTNDGIWDWNLRTMQVYFSPRWKEIIGYRDAEIRNDLEEWKSRI 387

Query: 248 -AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
              + D +         +E+     +      + +          L++ S + +      
Sbjct: 388 HPEEFDNVMATHERFFRAEDPVFEVEYRLRHKDGSYRWILGRGACLRDQSGKPYRMAGSH 447

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIP 332
              +     +   +   E  ++    
Sbjct: 448 TDMTRRKQIEAELSKAKEDAERASKA 473


>gi|284035554|ref|YP_003385484.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
 gi|283814847|gb|ADB36685.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
          Length = 1309

 Score =  353 bits (905), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 128/732 (17%), Positives = 263/732 (35%), Gaps = 37/732 (5%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI-DPNNHIGDLLKRQNTWYGKTTLW 150
            G+LK+++    + +G     ++     ++     + D    +  L   + T        
Sbjct: 183 DGFLKKVNPAFHQVLGWDEHYLLSHSFYELVHPDDLIDTQREVAQLANGKKTINFVHRFR 242

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
            ++GT  Y+       P        +G+  FGI      +          + KF    E 
Sbjct: 243 CVDGTYCYLQWVATPEPA-------TGYV-FGIARNVTEEKQRELRLNHSEAKFRTFFEN 294

Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSS--LTEYYAHKDDVLKTEKYPLLTSEE 266
            +G   +      + S             +++    L +  +            +  ++ 
Sbjct: 295 SQGLLCIHDLTGKMLSVNMAGAQALGYQPDELVGRRLADIVSMDHQEGLARYLQIAHTKG 354

Query: 267 SSLPEQEDFHTINLNQYTK--KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
            +       H     +           L          +       L    +  + +  +
Sbjct: 355 RASGLMHTLHKDGSLRIWLFNNILERDLDEQPYILGNAIDITERHRLEVELNRTQQMLSQ 414

Query: 325 TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
           T +   I F+  +         +        S D I      + +              V
Sbjct: 415 TNEVARIGFWEVNVLEQTIHWSAVTRSIHEVSDDFIPNLE--TAIYFFKGDHQVIIRNAV 472

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
                +        ++ T +     ++ +  +   + +Q        G   +  + +  +
Sbjct: 473 TRAIEEGVGYDLELQIVTAK---GQTVWVRALGIPEFDQGRCLRLY-GTFQDIDEKKKVE 528

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           + +  E ++L + ++     +A+ + +   ++ +    + +      I R  + VF    
Sbjct: 529 QALLTEKLRLAAFVKHAPAAVAMFDLQMNYIAVSNRWMEDYQLTGTIIGRCHYEVF--PT 586

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTK-EEKLLSLRIIIKKLPFS--SCYSLTMHDI 561
           TP          +   + +  E +        ++ +   +              +   DI
Sbjct: 587 TPEAWKAIHARCIQGAVEKKEEDVWRPLGWTHDQYVRWEVRPWYQFDGTIGGIMMLTQDI 646

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           +E   ++++L  AK +AE+ S  KS+FLA +SHEIRTPL  +IGF++++      P    
Sbjct: 647 TEICLQRDELKKAKLVAEQASQAKSEFLANMSHEIRTPLNGVIGFTDLVLKTTLTPT--- 703

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
              +Y   +++S N +L  +ND+LD SKIE+GK+ L  E V + E  S+A  ++   A  
Sbjct: 704 -QHQYLTIVNQSANALLTTINDILDFSKIEAGKLELTIEKVDIYELTSQAAEIITYQAQT 762

Query: 682 KRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIII-----STTHTSNE 735
           K + +  + A ++PR I  D   +KQ+ +N+L NA+ FT  G +I +     S +     
Sbjct: 763 KGLEVLLNVAPDVPRFIYTDSVRLKQVLVNLLGNAVKFTQQG-EIELKVTATSVSEPGEG 821

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            +   VRDTG+G+     +K    F Q   S   +  GTGLGL +A  ++     +  + 
Sbjct: 822 AIRFAVRDTGMGIRADMQQKIFHAFSQEDPSTTKKFGGTGLGLTIANKLLGLMGSQLELI 881

Query: 796 STPAKGTLIEII 807
           S P  G+     
Sbjct: 882 SEPGAGSCFYFT 893



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/226 (12%), Positives = 72/226 (31%), Gaps = 8/226 (3%)

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
                 +  +        P       +  E     I +R+   E++ +  + + ++D I 
Sbjct: 119 GFTLGTICVLDKVPRKLSPTQQEALRVLAETAIELIIRRRQTEEIIYVKQLFDLSNDLIC 178

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
           +   +G +   N A  ++ G+    +L   F   +  +        + ++ +     T+ 
Sbjct: 179 LAGVDGFLKKVNPAFHQVLGWDEHYLLSHSFYELVHPDDLIDTQREVAQLANGKK--TIN 236

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
            +      +     L+ +    P +        +++E KQ + +L+H++        +  
Sbjct: 237 FVHRFRCVDGTYCYLQWVATPEPATGYVFGIARNVTEEKQRELRLNHSEAKFRTFFENSQ 296

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
             L    H+    LT  +    +   Q  G   +         I  
Sbjct: 297 GLLCI--HD----LTGKMLSVNMAGAQALGYQPDELVGRRLADIVS 336



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/372 (7%), Positives = 89/372 (23%), Gaps = 24/372 (6%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D  G +  ++    + +G    +++G RL D+  + H +       +   +    G    
Sbjct: 303 DLTGKMLSVNMAGAQALGYQPDELVGRRLADIVSMDHQEGLARYLQIAHTKGRASGLMHT 362

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
              +G+ L + +    L     + +     G  I       +       R  +  S  +E
Sbjct: 363 LHKDGS-LRIWLFNNIL-ERDLDEQ-PYILGNAI--DITERHRLEVELNRTQQMLSQTNE 417

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHL-RMKNKVSSLTEYYAH----KDDVLKTEKYPLLTS 264
           + +                +    +  + +      E   +       V+          
Sbjct: 418 VARIGFWEVNVLEQTIHWSAVTRSIHEVSDDFIPNLETAIYFFKGDHQVIIRNAVTRAIE 477

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNN---SKESFEYLSHRNHPSLSAYFDEGENL 321
           E      +    T        +       +     +    +        +       +  
Sbjct: 478 EGVGYDLELQIVTAKGQTVWVRALGIPEFDQGRCLRLYGTFQDIDEKKKVEQALLTEKLR 537

Query: 322 TPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
               V   P    ++    N    +  ++   +            +         +   A
Sbjct: 538 LAAFVKHAPAAVAMFDLQMNYIAVSNRWMEDYQLT-------GTIIGRCHYEVFPTTPEA 590

Query: 381 IKPVMLYRSDRTCIAASARL-HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
            K +               +   + W  +  +     P+ + +          +  +  +
Sbjct: 591 WKAIHARCIQGAVEKKEEDVWRPLGWTHDQYVRWEVRPWYQFD--GTIGGIMMLTQDITE 648

Query: 440 TRINKRKMEIEV 451
             + + +++   
Sbjct: 649 ICLQRDELKKAK 660


>gi|42523042|ref|NP_968422.1| two-component hybrid sensor and regulator [Bdellovibrio
           bacteriovorus HD100]
 gi|39575247|emb|CAE79415.1| two-component hybrid sensor and regulator [Bdellovibrio
           bacteriovorus HD100]
          Length = 588

 Score =  353 bits (905), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 101/401 (25%), Positives = 172/401 (42%), Gaps = 42/401 (10%)

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF-LEQNTP 506
           +I   +  +IL++  +    +N +G+I   NR   K FG+  +++L K      +     
Sbjct: 28  QISEQRTRTILDSAYNAFIGMNSDGLITDWNRQAEKTFGWKDKEVLGKELADIVIPHKYR 87

Query: 507 SVMNHYLTEILSLDLRQTLEK--ITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDIS 562
                 L   L+      L K        ++   + + + I     +    +   +HDI+
Sbjct: 88  EAHKKGLAHYLATGEGPVLNKRMEITALHRDGHEIPVEMTIFPFEHNGKHLFGSFLHDIT 147

Query: 563 EWKQEKNKL--------------------------------SHAKKIAEKESSHKSDFLA 590
           E K  ++KL                                    + A+  +  K +FLA
Sbjct: 148 ERKATESKLRSLYQDLEHRVQERTQELALANKQLKEDASIRQRLYEQAQTANRLKDEFLA 207

Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650
            VSHE+RTPL  I+G S+++K+               N I R+  + + I+NDLLD+S+I
Sbjct: 208 TVSHELRTPLNVILGHSDILKD---PATSPEEAKVSINAIHRNAQIQVQIINDLLDVSRI 264

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710
            SGK+ LH +P+ ++  V  A   VQ+ A  K I +R      +  +  D   ++Q+  N
Sbjct: 265 ISGKLQLHVKPIDIESVVEAAYESVQIAAKSKNIKVRVEGPERLKSVGGDPERLQQVLWN 324

Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           +LSNAI FTP GG I +  ++  +  V + V D G G+    L    + F Q   +   R
Sbjct: 325 LLSNAIKFTPKGGNITVKLSNVES-RVQIDVIDNGKGIDPEFLPYVFERFRQEDATTTRR 383

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFPL 810
             G GLGL + + +V+ + G     S  P +G    +  P+
Sbjct: 384 YGGLGLGLAIVRHIVEGHGGTVAATSAGPNQGAKFTVSLPV 424



 Score = 43.5 bits (101), Expect = 0.17,   Method: Composition-based stats.
 Identities = 19/174 (10%), Positives = 44/174 (25%), Gaps = 19/174 (10%)

Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSV 357
              +L  ++  +    F   E  T   +D     F  + S G +   N        +K  
Sbjct: 11  VARFLLSKSERTFLDRFQISEQRTRTILDSAYNAFIGMNSDGLITDWNRQAEKTFGWKDK 70

Query: 358 DDIE---------------IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT 402
           + +                   GL+  L   +    N    +     D   I     +  
Sbjct: 71  EVLGKELADIVIPHKYREAHKKGLAHYLATGEGPVLNKRMEITALHRDGHEIPVEMTIFP 130

Query: 403 IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK-RKMEIEVMQLC 455
            + N ++          +       +       +       + +++ +   QL 
Sbjct: 131 FEHNGKHLFGSFLHDITERKATESKLRSL--YQDLEHRVQERTQELALANKQLK 182



 Score = 40.0 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 27/225 (12%), Positives = 71/225 (31%), Gaps = 22/225 (9%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNTW--- 143
           +++ G + + + +  KT G    +++G  L D+         +   +   L         
Sbjct: 48  MNSDGLITDWNRQAEKTFGWKDKEVLGKELADIVIPHKYREAHKKGLAHYLATGEGPVLN 107

Query: 144 -YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFG-IVHVNRVDNDPRALGKRLD 201
              + T    +G    +P+++   P      E +G   FG  +H         +  + L 
Sbjct: 108 KRMEITALHRDGH--EIPVEMTIFP-----FEHNGKHLFGSFLHDITERKATESKLRSLY 160

Query: 202 KKFSHLHEIKKGHSSV------EKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255
           +   H  + +    ++      E         +      R+K++  +   +       + 
Sbjct: 161 QDLEHRVQERTQELALANKQLKEDASIRQRLYEQAQTANRLKDEFLATVSHELRTPLNVI 220

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF 300
                +L  ++ +   +E   +IN      +     + +    S 
Sbjct: 221 LGHSDIL--KDPATSPEEAKVSINAIHRNAQIQVQIINDLLDVSR 263


>gi|224370415|ref|YP_002604579.1| sensory box histidine kinase (GGDEF domain protein)
           [Desulfobacterium autotrophicum HRM2]
 gi|223693132|gb|ACN16415.1| sensory box histidine kinase (GGDEF domain protein)
           [Desulfobacterium autotrophicum HRM2]
          Length = 1003

 Score =  353 bits (905), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 117/422 (27%), Positives = 197/422 (46%), Gaps = 38/422 (9%)

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
            E +      + +     +  S  +  + GIA ++ EG  +  N  + +++GY + ++++
Sbjct: 575 QEILHREKVDKALYKSEARFRSTFQQAAVGIAHVSPEGKFIRINERLCQIWGYGLRELIQ 634

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC- 553
           K F         +     + +++               +K    +   + +  L  S   
Sbjct: 635 KNFQEITHSEDLNADLDLVQQVI-DGKISRYSMEKRYISKNGYPVWCNLTVSLLRNSDGT 693

Query: 554 ---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
              +   + DIS+ K+ + +L  AK  AEK +  KS+FLA + HE+RTPL A+IGFSEV+
Sbjct: 694 PRYFISVVEDISQRKKAEERLLSAKIEAEKANIAKSNFLASMGHELRTPLNAVIGFSEVL 753

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
            +Q FGPL NP+  EY N I  SG  +L ++ND+LD+SK+E+G M     P  LD  + E
Sbjct: 754 LDQFFGPL-NPQQAEYVNDILHSGRHLLTLINDILDLSKVEAGWMRFLPVPTPLDSVMGE 812

Query: 671 AISLVQLYANEKRILIRTSFANNIPRIL--ADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
           ++  +     EK+I +         +I   +D   +KQI  ++LSNA  FTP GG I I+
Sbjct: 813 SLKTIGPMIKEKQIRLIRDLPKEFSKIHLHSDPVKLKQIFNHLLSNAAKFTPKGGTITIT 872

Query: 729 TTHTSN--------------------------EEVILRVRDTGVGMTNYELEKAMKPFGQ 762
               S+                            V + +RDTG G+T+   +K  + F Q
Sbjct: 873 GKIVSDVCLPSNMALKDTPLPDSLRTCTQPGVPGVEICIRDTGTGLTSGHSDKIFESFFQ 932

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFPLY---DTSHPHD 818
           +      +  GTGLGL LA+  V+ + G+ ++ S    KG+      PL    ++ HP +
Sbjct: 933 VEGGISDKSPGTGLGLSLARRFVEMHKGRIWVHSDGLGKGSCFYFTIPLALDEESLHPEE 992

Query: 819 CI 820
            +
Sbjct: 993 QL 994



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/262 (9%), Positives = 68/262 (25%), Gaps = 12/262 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNT-WYGK 146
           +   G    I+E L +  G    ++I     +++    ++ + + +  ++  + + +  +
Sbjct: 608 VSPEGKFIRINERLCQIWGYGLRELIQKNFQEITHSEDLNADLDLVQQVIDGKISRYSME 667

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                  G    V  +L    + + +     F    +V                  +   
Sbjct: 668 KRYISKNG--YPVWCNLTVSLLRNSDGTPRYF--ISVVEDISQRKKAEERLLSAKIEAEK 723

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK-VSSLTEYYAHKDDVLKTEKYPLLTSE 265
            +  K    +    +              + ++    L    A   + +      LLT  
Sbjct: 724 ANIAKSNFLASMGHELRTPLNAVIGFSEVLLDQFFGPLNPQQAEYVNDILHSGRHLLT-- 781

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
              + +  D   +             L +   ES + +             +      + 
Sbjct: 782 --LINDILDLSKVEAGWMRFLPVPTPLDSVMGESLKTIGPMIKEKQIRLIRDLPKEFSKI 839

Query: 326 VDKCPIPFFVYSHGNLFYANPS 347
                 P  +    N   +N +
Sbjct: 840 -HLHSDPVKLKQIFNHLLSNAA 860


>gi|238756866|ref|ZP_04618054.1| PAS/PAC domain [Yersinia aldovae ATCC 35236]
 gi|238704696|gb|EEP97225.1| PAS/PAC domain [Yersinia aldovae ATCC 35236]
          Length = 1334

 Score =  352 bits (904), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 112/652 (17%), Positives = 231/652 (35%), Gaps = 36/652 (5%)

Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS 242
           +      D +  AL  +       + ++ +    V +    I          +   K+  
Sbjct: 181 LARNMTADLERLALVAKNTSNAVVITDVNREIVWVNEGFERITGYSQDEALGKSPGKLLQ 240

Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302
            +         +KT               +    + +  +Y  +       N+  E   +
Sbjct: 241 CSSTDHSVKTAMKTAL-----DAGEPFKGEIVNRSKSGQEYWIELEIQPRYNDQNEPIGF 295

Query: 303 LSHRNHPSLSAY----FDEGENLTPETVDKCPIPFFV---YSHGNLFYANPSFLLLTKYK 355
           ++  +  S         +         +    +   +    S G +   N +F  ++ Y 
Sbjct: 296 MAIESDISERKATYQRLEAALRENNALLSTLNLHGIISTADSAGLITDVNDAFCNISGYS 355

Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
             + +      +  L      D    + +    ++                      +  
Sbjct: 356 REELVGQ----TYRLIDSHTHDAAFWQSMWHNIANGISWRGEICNKA---KGGRLYWVDT 408

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGII 474
                 N   +      I+ +    +I +  + I   QL    +    GI   N +EG  
Sbjct: 409 TIAPFKNSTGQIERYISIQIDITANKIQQANLIIAKNQLVRAADVAELGIWTWNIQEGTF 468

Query: 475 LS---TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
                 N             + +  +   +  +   ++N+ +   L            + 
Sbjct: 469 SFDDRMNDIYELPEEMRNTPLPQAYWYSLVHPDDRPIVNNAVKTALDNGGIYRQIFRIIV 528

Query: 532 STKEEKLLSLRIIIKKLPFSSCYS--LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
              + + +     +++  + +         DI++ ++ +N L  A++ AE+ +  KS FL
Sbjct: 529 -HGQVRYIQSTGTVERDEYGNAVLMMGINRDITQQREAENILQSARQAAEEANKAKSAFL 587

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
           A +SHE+RTP+ AI+G   +++        N +  +YA   + +   +L ++ND+LD SK
Sbjct: 588 ANMSHELRTPMNAILGMLTLLRKTGL----NNKQADYAVKSEAATRTLLRLLNDILDFSK 643

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIA 708
           IE+GKM L   P  +   + +   ++      K++ +       +P+ +  D   ++QI 
Sbjct: 644 IEAGKMVLECIPFDIHVMLRDLAVILSSNLKIKKVEVLFDIDPTLPQFVEGDSMRLQQIL 703

Query: 709 LNILSNAIHFTPSGGQII-ISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPN 765
            N+  NA+ FT  G  ++ I      +++V L   VRDTG+G+     E     F Q   
Sbjct: 704 TNLGGNALKFTEQGEVVLFIKVLKQDSQQVTLHFGVRDTGIGIAPEHQESIFGGFTQAEA 763

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL--IEIIFPLYDTSH 815
           S   R  GTGLGL +++  V    G+  + S P +G+L    I  PL   S+
Sbjct: 764 STTRRFGGTGLGLVISQRFVALMGGRLELESQPGQGSLFHFTITLPLSSPSN 815



 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 55/441 (12%), Positives = 126/441 (28%), Gaps = 28/441 (6%)

Query: 154 GTNLYVPIDLAA-LPIYSRNRE--FSGFRGFGIVHVNRVDNDPRA--LGKRLDKKFSHLH 208
           G  L+VP+  +   P+    R+    G     IV +  +  D      G+   + F  L+
Sbjct: 25  GVLLFVPVYKSGTHPMTPAERQASLVGLLYSPIV-IADLLRDIPEFMSGRVDIELFDSLN 83

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           ++       + +             +  ++            +  +       +T   SS
Sbjct: 84  DLSNKTMVFDADGSKY------DNLIPDEDHNDETMAARIFHNTSILPLPGREMTLRISS 137

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF-DEGENLTPETVD 327
            P  E                      +    + +S RN   + A               
Sbjct: 138 TPAFEALTERYAPWLVFAFGLLLSSALALLIRQQVSGRNRAEMLARNMTADLERLALVAK 197

Query: 328 KCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
                  +      + + N  F  +T Y   + +  + G    L     +D++    +  
Sbjct: 198 NTSNAVVITDVNREIVWVNEGFERITGYSQDEALGKSPGK---LLQCSSTDHSVKTAMKT 254

Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
                          +          +      + N   E +    IE +  + +   ++
Sbjct: 255 ALDAGEPFKGEIVNRSKS---GQEYWIELEIQPRYNDQNEPIGFMAIESDISERKATYQR 311

Query: 447 MEIEVMQLCSILEATS-DGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           +E  + +  ++L   +  GI    +  G+I   N A   + GY  E+++ + + +     
Sbjct: 312 LEAALRENNALLSTLNLHGIISTADSAGLITDVNDAFCNISGYSREELVGQTYRLIDSHT 371

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHD 560
             +     +   ++  +            K  +L  +   I     S+     Y     D
Sbjct: 372 HDAAFWQSMWHNIANGISWRG--EICNKAKGGRLYWVDTTIAPFKNSTGQIERYISIQID 429

Query: 561 ISEWKQEKNKLSHAKKIAEKE 581
           I+  K ++  L  AK    + 
Sbjct: 430 ITANKIQQANLIIAKNQLVRA 450



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/378 (9%), Positives = 96/378 (25%), Gaps = 23/378 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID--PNNHIGDLLKRQNTWYGK 146
            D +  +  ++E   +  G    + +G     +      D      +   L     + G+
Sbjct: 206 TDVNREIVWVNEGFERITGYSQDEALGKSPGKLLQCSSTDHSVKTAMKTALDAGEPFKGE 265

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                  G      I+L   P Y+   E  GF    I              +   ++ + 
Sbjct: 266 IVNRSKSG--QEYWIELEIQPRYNDQNEPIGFM--AIESDISERKATYQRLEAALRENNA 321

Query: 207 LHEIKK--GHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEKYPLL 262
           L       G  S       I        ++    + ++   T                + 
Sbjct: 322 LLSTLNLHGIISTADSAGLITDVNDAFCNISGYSREELVGQTYRLIDSHTHDAAFWQSMW 381

Query: 263 TSEESSLPEQEDF--HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE--- 317
            +  + +  + +          Y         +N++ +   Y+S +   + +        
Sbjct: 382 HNIANGISWRGEICNKAKGGRLYWVDTTIAPFKNSTGQIERYISIQIDITANKIQQANLI 441

Query: 318 -GENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTK--YKSVDDIEIAGGLSTLLDAPK 374
             +N      D   +  + +   N+     SF       Y+  +++           +  
Sbjct: 442 IAKNQLVRAADVAELGIWTW---NIQEGTFSFDDRMNDIYELPEEMRNTPLPQAYWYSLV 498

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
             D+  I    +  +             I         +      + +++   +   GI 
Sbjct: 499 HPDDRPIVNNAVKTALDNGGIYRQIFRIIV--HGQVRYIQSTGTVERDEYGNAVLMMGIN 556

Query: 435 PEDVDTRINKRKMEIEVM 452
            +    R  +  ++    
Sbjct: 557 RDITQQREAENILQSARQ 574



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/251 (7%), Positives = 61/251 (24%), Gaps = 12/251 (4%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKRQNTWYGKTT 148
           D+ G + ++++      G    +++G     + S          +   +    +W G+  
Sbjct: 336 DSAGLITDVNDAFCNISGYSREELVGQTYRLIDSHTHDAAFWQSMWHNIANGISWRGEIC 395

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                G   +V   +A  P  +   +   +    I      +   +A       +     
Sbjct: 396 NKAKGGRLYWVDTTIA--PFKNSTGQIERYISIQI--DITANKIQQANLIIAKNQLVRAA 451

Query: 209 EIKKGHSSVEK-------EKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
           ++ +                  +      P  +R      +      H DD         
Sbjct: 452 DVAELGIWTWNIQEGTFSFDDRMNDIYELPEEMRNTPLPQAYWYSLVHPDDRPIVNNAVK 511

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
              +   +  Q     ++      +      ++    +   +      +     +     
Sbjct: 512 TALDNGGIYRQIFRIIVHGQVRYIQSTGTVERDEYGNAVLMMGINRDITQQREAENILQS 571

Query: 322 TPETVDKCPIP 332
             +  ++    
Sbjct: 572 ARQAAEEANKA 582


>gi|284038022|ref|YP_003387952.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
 gi|283817315|gb|ADB39153.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
          Length = 939

 Score =  352 bits (904), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 99/511 (19%), Positives = 186/511 (36%), Gaps = 24/511 (4%)

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYK-SVDDIEIAGGLSTL 369
                   +     +        +      +   N  F  +       D++         
Sbjct: 172 EEALRTSAHRLSNLIADFQEGILLEDENRAIVLVNQQFCNMFSVPLKPDELVGVDCSGMA 231

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
             +             + +  +           I      +       +           
Sbjct: 232 EQSKGFFREQDAFVARVNQLLQEQKLVIGE--EISLADGRTFE---RDYIPIFIDGVYAG 286

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
                 +    +  +        +   I+E  + G+  ++ E  I+ TN++   + GY  
Sbjct: 287 HLWKYTDITKRKHAEDAAFYLNEKYQRIIENMNLGLIEVDLEERIVYTNQSFCAMSGYEP 346

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
           ++++ +  T  L +           E                  K    +   +    L 
Sbjct: 347 DELIGQVATDILLKGQNIQFMKEKNESRLRGN--VDAYEVSIKNKRGDAMWWLVSGAPLY 404

Query: 550 FSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
             S           DI++ KQ +++L  AK+ AE  +  K  FLA +SHEIRTP+ AI+ 
Sbjct: 405 SQSGQVIGSTGIHLDITKQKQLESELRVAKQEAEHSARVKELFLANMSHEIRTPMNAILN 464

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
             + I               +   I+ + + +L I+ND+LD SKIE+G+++L      L 
Sbjct: 465 LGQQITKTSL----TEHQQFFIGMINTAASNLLVIINDILDFSKIEAGELSLEHINFDLA 520

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ 724
           + + +A+ ++   A +K ++I T   + +P  +L D   + QI LN++ N++ FT +G  
Sbjct: 521 DLIGQAVQVMTHDAEKKGLVISTEIGSGLPPTLLGDPFRINQILLNLIGNSVKFTNAGS- 579

Query: 725 III---STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           + I   S     N+ + L V DTG+G+    L      F Q   S   R  G+GLG+ + 
Sbjct: 580 VHIQCNSKKVAGNQLITLSVTDTGIGIAPEFLSNLFTKFTQEDGSIGRRYGGSGLGMSIT 639

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEI--IFPL 810
           K +VD   G   + S   KGT + +    P+
Sbjct: 640 KQLVDLMGGTIDVKSEKNKGTTVTVKLSLPI 670



 Score = 76.2 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/305 (8%), Positives = 86/305 (28%), Gaps = 10/305 (3%)

Query: 283 YTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NL 341
                     +N    +   L         A     E      ++      +  +     
Sbjct: 12  EPLSTDSLHQENERLRAETKLLKDTIRQQQAELRRIEQRWKFALEGFGDAVWELNLQTRE 71

Query: 342 FYANPSFLLLTKYKSVDDIEIAG-GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400
              +  +  +  Y   +  +I    +  L      +  +    + L        +     
Sbjct: 72  IIRSARYREILGYTLEEFPDIVEVWMDKLHPQDWQNLTDPDMSLYLS---GVRKSHVTEY 128

Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
             +  +      +        ++  + +   G   +    +  +  +     +L +++  
Sbjct: 129 RLLAKDGTYKHFLDKGRVFSYSEDGKPLLMIGTSTDITHQKNIEEALRTSAHRLSNLIAD 188

Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYP--VEDILRKPFTVFLEQN--TPSVMNHYLTEI 516
             +GI + +    I+  N+    +F  P   ++++    +   EQ+       + ++  +
Sbjct: 189 FQEGILLEDENRAIVLVNQQFCNMFSVPLKPDELVGVDCSGMAEQSKGFFREQDAFVARV 248

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISEWKQEKNKLSHAK 575
             L   Q L      S  + +      I   +    + +     DI++ K  ++   +  
Sbjct: 249 NQLLQEQKLVIGEEISLADGRTFERDYIPIFIDGVYAGHLWKYTDITKRKHAEDAAFYLN 308

Query: 576 KIAEK 580
           +  ++
Sbjct: 309 EKYQR 313



 Score = 74.3 bits (181), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 39/386 (10%), Positives = 104/386 (26%), Gaps = 29/386 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFK--MIGMRLCDVSDILH----IDPNNHIGDLLKR 139
            W ++        S    + +G    +   I     D           DP+  +  L   
Sbjct: 62  VWELNLQTREIIRSARYREILGYTLEEFPDIVEVWMDKLHPQDWQNLTDPDMSL-YLSGV 120

Query: 140 QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199
           + +   +  L   +GT     +D   +  YS + +       G         +     + 
Sbjct: 121 RKSHVTEYRLLAKDGT-YKHFLDKGRVFSYSEDGKP--LLMIGTSTDITHQKNIEEALRT 177

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQS----PPPHLRMKNKVSSLTEYYAHKDDVLK 255
              + S+L    +    +E E   I                 +++  +      +     
Sbjct: 178 SAHRLSNLIADFQEGILLEDENRAIVLVNQQFCNMFSVPLKPDELVGVDCSGMAEQSKGF 237

Query: 256 TEKYPLLTSEESSLPEQEDF----HTINLNQYTKKQYFGTLQNN---SKESFEYLSHRNH 308
             +     +  + L +++           +  T ++ +  +  +   +   ++Y      
Sbjct: 238 FREQDAFVARVNQLLQEQKLVIGEEISLADGRTFERDYIPIFIDGVYAGHLWKYTDITKR 297

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
                            ++   +    V     + Y N SF  ++ Y+  + I       
Sbjct: 298 KHAEDAAFYLNEKYQRIIENMNLGLIEVDLEERIVYTNQSFCAMSGYEPDELIGQV-ATD 356

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
            LL    +          L           A   +I+  R +++          +Q  + 
Sbjct: 357 ILLKGQNIQFMKEKNESRLR------GNVDAYEVSIKNKRGDAMWWLVSGAPLYSQSGQV 410

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQ 453
           +   GI  +    +  + ++ +   +
Sbjct: 411 IGSTGIHLDITKQKQLESELRVAKQE 436



 Score = 60.0 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/142 (11%), Positives = 45/142 (31%), Gaps = 5/142 (3%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL-HIDPNNHIGDLLKRQNTWYGK 146
            +D    +   ++      G    ++IG    D+     +I       +   R N    +
Sbjct: 324 EVDLEERIVYTNQSFCAMSGYEPDELIGQVATDILLKGQNIQFMKEKNESRLRGNVDAYE 383

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
            ++    G  ++  +  +  P+YS++ +  G  G  +           +  +   ++  H
Sbjct: 384 VSIKNKRGDAMWWLV--SGAPLYSQSGQVIGSTGIHL--DITKQKQLESELRVAKQEAEH 439

Query: 207 LHEIKKGHSSVEKEKYDIFSQQ 228
              +K+   +    +       
Sbjct: 440 SARVKELFLANMSHEIRTPMNA 461


>gi|168699668|ref|ZP_02731945.1| sensory box histidine kinase/response regulator [Gemmata
           obscuriglobus UQM 2246]
          Length = 964

 Score =  352 bits (904), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 111/810 (13%), Positives = 241/810 (29%), Gaps = 95/810 (11%)

Query: 48  SFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGY-LKEISEELPKTI 106
           + +    +D     + +      +   + + +P  VR        G  +  +++   +  
Sbjct: 56  TQDSLPESDVRLRLLESAVIHAHDAVAIVEAVPGPVR-------PGRSVMYVNDAFCRLT 108

Query: 107 GNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAA 165
           G     +IG  L  +       +    +   +    +   +   +  +GT     +DL+A
Sbjct: 109 GYSRADVIGRSLYMLRGASTDPETLARLATAMDAGTSLRVELRNYRKDGTPF--WVDLSA 166

Query: 166 LPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF 225
           +P+   +   S +    I              ++  +    + +   G  S +       
Sbjct: 167 VPVPDPDGTLSHW--VLIQRDIDRRKSAERRARQTGQLLRAIIDAFPGPISAKDRDGRYL 224

Query: 226 SQQ-----------SPPPHLRMKNKVSSLTEYYAHKDDV---LKTEKYPLLTSEESSLPE 271
                                    V         + D             T   +   +
Sbjct: 225 VMNQFQAELLGVTPEAAVGRTATELVGPAHGAKTAERDREVMATCRPTQFETRYPAPNGD 284

Query: 272 QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI 331
           +  +       +                   L      +      + E    +     P 
Sbjct: 285 ERPWLASKAPLWMPDGIDSEPAGARGVVTVALDISALKAAEDALRKSEERYRQLFRAVPH 344

Query: 332 PFFVYSHG--NLFYANPSFLLLTKYKSVD-------DIEIAGGLSTLLDAPKLSDNNAIK 382
           P FVY      +   N + L    Y   +       DI +      L        +    
Sbjct: 345 PVFVYDTQTLRVLAINEAALRKYGYTRDEFLTLTVSDIRVLDAEPPLAPGDSSRPDGPPA 404

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
                      +        +                          +  +  +  + R 
Sbjct: 405 LRRHRTRSGALLDVEVSSFALSLEGRGV-------------------KLALVNDVTERRK 445

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            + ++         I E+TS G+++ N  G+ +S N A + + G  VE++L+        
Sbjct: 446 AEEELRRSEGMFRGIFESTSAGVSLTNAAGLFVSCNPAFAAMLGRSVEEVLQLTPASVTH 505

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SLTM 558
               +     + E+ +   R            + +++   +    +  +           
Sbjct: 506 PEDLAAQQALMDEVRA-GARDRFAYSLRYLRPDGQVVWAELSFAAIRDARGAYEYGLGVS 564

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            +++E +  +++L  A K+              V+H+    LTA++G   +++     P 
Sbjct: 565 VNVTERRLLEDQLRQAHKM-----EAIGQMAGGVAHDFNNLLTAVLGNLSLVRLGPDDPN 619

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
           G     E     +++     D+   LL  ++    +  L F PV    A++E + L++  
Sbjct: 620 G-----ELVCAAEQAATRAADLTRKLLGYAR----RNQLVFAPVEPLAALNEVVGLMRCT 670

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS----- 733
               R+ +      + P + AD   + Q  +N+  NA    P GG ++ +          
Sbjct: 671 V-GPRVGLTVDVPPDCPPVHADPTLLVQAIMNLGLNARDAMPDGGVVVFTARPVDLRPDD 729

Query: 734 -----------NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
                         V   V DTG GM++    +  +PF          G+GTGLGLP+  
Sbjct: 730 PVPAGWDDVPPGRYVRFTVADTGCGMSDEVKTRLFEPFFTTKG----IGKGTGLGLPMVH 785

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
            +V  + G   + S P  GT +E+  P+ +
Sbjct: 786 GIVKQHHGWIEVHSAPGTGTRMELNLPVSE 815


>gi|330950455|gb|EGH50715.1| PAS protein [Pseudomonas syringae Cit 7]
          Length = 1350

 Score =  352 bits (904), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 133/771 (17%), Positives = 245/771 (31%), Gaps = 67/771 (8%)

Query: 83  VRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL----K 138
             F   + A G       +    +G      +G +  D   I  IDP       L     
Sbjct: 116 AEFVRRVRADGR-----PDFS--LGR-----LGAQQGDRFIIQFIDPLARNVQALGLDIA 163

Query: 139 RQNTWYGKTTLWPIEGT-NLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG 197
            +             G   L  PI L    +   +     F     V+         AL 
Sbjct: 164 SEEHRRDAALQAMRSGAATLSAPITL----LQDNDDHLRAFLFLLPVYSTPETPTDIALR 219

Query: 198 KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257
           +     +++     +   S           +     +     +   T    H+ +VL+T 
Sbjct: 220 ETSLIGWTYAPLAMREVMSNLDPLNHRVHLKLYD--VSEGQHLIYQTPESGHEQEVLQTY 277

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
            +           E                    +          +             +
Sbjct: 278 AFERDIYGRVWRMEVGAHPAFAEALDPVPAGRAFIIGTLVSLMLTVLVGTLLLSRQRKQQ 337

Query: 318 ---GENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL------- 366
              G+      V+            G +   N +   +  Y   + +             
Sbjct: 338 VVAGQARLATIVENSSDAIIGEALDGRIITWNRAAEQMFGYDEHEVLGCPLAPLLVPPDL 397

Query: 367 ----STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
                 LL+     +            +   I  +     I+      L    +  +  +
Sbjct: 398 VHEDEQLLERVARGERGPTLETRRLHKNGQLIDVTITCSFIRETDGTILGAAKMMHDITD 457

Query: 423 QFPENMPQNGIEPEDVDTRINK-RKMEIEVMQLCSILEATSD-GIAIINREGIILSTNRA 480
           +            +       +  ++      L  +L+A+S+  I   + +G I   NR 
Sbjct: 458 RKRVERYLMEFNAQLEQQVSERTAELSRVAGLLQGVLDASSEVSIIATDMQGQIFVFNRG 517

Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE-------------K 527
              L GY   +++                             + ++             +
Sbjct: 518 AELLLGYSNAEMVSGNGPGVFHLPEEVAARSAELSREYGTPIEGIDVFCYKASLEGSETR 577

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
                 K+   + + +II  +  +      +     DI+E      +L  AK  AE  ++
Sbjct: 578 QWTYVRKDGTTVPVLMIITPIRTADGELIGHLGIAQDITERLHHSAELHAAKSSAEAANA 637

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
            KS FLA +SHEIRTP+ A+IG S ++ N       N +  +    +  +G  +L I+ND
Sbjct: 638 AKSLFLANMSHEIRTPMNAVIGISHLLHNTAL----NDQQRQLLTKLQIAGRTLLGIIND 693

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLR 702
           +LDI+KIE+G+M L   P S  + + E   L    A EK +    S   ++P +++ D  
Sbjct: 694 ILDIAKIEAGEMRLEHNPFSPRQLLDELGELFTPQAQEKGLRFSVSVVASLPGQLIGDAL 753

Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDTGVGMTNYELEKAMK 758
            V QI +N++ NA+ FT  GG + ++ +   +      +   V+DTG G+    L +   
Sbjct: 754 RVNQILMNLVGNALKFTTVGG-VDVTVSREDDHADTCWLRFSVQDTGCGIPANALGQLFA 812

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           PF Q   S   R  GTGLGL + + + +   G+  + S    G+   +  P
Sbjct: 813 PFTQADASTTRRFGGTGLGLSVVRGLAEQMGGRIGVESELGTGSEFWVELP 863



 Score =  117 bits (294), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 65/433 (15%), Positives = 135/433 (31%), Gaps = 45/433 (10%)

Query: 169 YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228
            +  +E+ G RGFG +   RV     A   R  +             + + +++ I    
Sbjct: 92  RNIEKEYPGARGFGFIR--RVAASDEAEFVRRVRADGRPDFSLGRLGAQQGDRFIIQFID 149

Query: 229 SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288
               +++      +  E+               L++  + L + +D     L        
Sbjct: 150 PLARNVQALGLDIASEEHRRDAALQAMRSGAATLSAPITLLQDNDDHLRAFLFLLPVYST 209

Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSF 348
             T  + +      +     P          +     V                      
Sbjct: 210 PETPTDIALRETSLIGWTYAPLAMREVMSNLDPLNHRVH--------------------- 248

Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
           L L        +             +  ++   + V+   +         R+  ++    
Sbjct: 249 LKLYDVSEGQHLI-----------YQTPESGHEQEVLQTYA--FERDIYGRVWRMEVGAH 295

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE----VMQLCSILEATSDG 464
            + A    P      F      + +    V T +  R+ + +      +L +I+E +SD 
Sbjct: 296 PAFAEALDPVPAGRAFIIGTLVSLMLTVLVGTLLLSRQRKQQVVAGQARLATIVENSSDA 355

Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
           I     +G I++ NRA  ++FGY   ++L  P    L        +  L E ++   R  
Sbjct: 356 IIGEALDGRIITWNRAAEQMFGYDEHEVLGCPLAPLLVPPDLVHEDEQLLERVARGERGP 415

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEK 580
               T    K  +L+ + I    +  +    L     MHDI++ K+ +  L       E+
Sbjct: 416 -TLETRRLHKNGQLIDVTITCSFIRETDGTILGAAKMMHDITDRKRVERYLMEFNAQLEQ 474

Query: 581 ESSHKSDFLARVS 593
           + S ++  L+RV+
Sbjct: 475 QVSERTAELSRVA 487


>gi|260892898|ref|YP_003238995.1| multi-sensor signal transduction histidine kinase [Ammonifex
           degensii KC4]
 gi|260865039|gb|ACX52145.1| multi-sensor signal transduction histidine kinase [Ammonifex
           degensii KC4]
          Length = 418

 Score =  352 bits (904), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 86/402 (21%), Positives = 170/402 (42%), Gaps = 26/402 (6%)

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
              L   F+     ++ P               R+   ++  E  QL +IL    + +  
Sbjct: 39  GVGLVGLFVLILAISRRPTPPAALDTNLSSHQLRLQLAELIREKEQLEAILSGLDEAVLA 98

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
           +++EG +L  NRAV +LF    E+   K     +  +    +   +  +         E+
Sbjct: 99  LDQEGRVLLANRAVKELFDIAPEEARGKAVLEVVRDHR---LEELVGRVRDTGTPT--EQ 153

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
                + + ++  +R             + + +++  ++ +                   
Sbjct: 154 ELTFLSPQPRIFVVRASPLPPDK---VVVVLREVTRERRLERMRRE-------------- 196

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           F+A VSHE+RTPLTAI GF E +++            E+   I      ++ +V DLL +
Sbjct: 197 FVANVSHELRTPLTAIKGFVEALEDGAL--EDRETAQEFLQIIASETERLIHLVEDLLKL 254

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707
           S++E+ +  L  + V+L+E +     + +  A EK +         +P +L D   + Q+
Sbjct: 255 SRLENRQTFLRRQEVNLNELIHNIALVWRRRAEEKGLAFEVDLPPGLPLVLGDPELLTQV 314

Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
            +N++ NA+ +TP G ++ I   +  +  V + V DTG+G+    L +  + F ++  ++
Sbjct: 315 FVNLIDNALKYTPVG-RVRIRGEYQ-SGWVRIEVEDTGIGIPQDCLPRVFERFFRVDRAR 372

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
                GTGLGL + K +V+ + GK  + S   KG+   +  P
Sbjct: 373 SRASGGTGLGLSIVKHIVELHGGKVGVESELGKGSRFWVYLP 414


>gi|75909673|ref|YP_323969.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
 gi|75703398|gb|ABA23074.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
          Length = 865

 Score =  352 bits (904), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 111/563 (19%), Positives = 217/563 (38%), Gaps = 25/563 (4%)

Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP-ETVDKC 329
           ++        + +          N   +    +      + S   +E       +  ++ 
Sbjct: 166 DEFRIVWPEKSIHWIAAKGRFFYNEQGQPVRMIGVCMDITESKRSEENTRQLATQVQEQA 225

Query: 330 PI--PFFVYSHGNLFYANPSF---LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP- 383
            I       S  +++  N +     +     +V  +     +   +    L      K  
Sbjct: 226 NILNAILATSVDHIYILNRTGHYQYVSYGGAAVLGLHPQQMIGKTVQEIDLPQELIDKMN 285

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
                  +           +  + ++       P    N   E      +  +  + +  
Sbjct: 286 GQFLTVMKVGEPIKDECEYVAEDGKHYYEYILTPLRNVNHSIE--GVITVSRDMTEHKRA 343

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED---ILRKPFTVF 500
           ++ +     +   + E+   G+A  N +G I   N A  ++ GY  E+   + +  +   
Sbjct: 344 EQSIRNSEARFRRLFESNLIGVAFWNVDGFITDANDAYLQIVGYTREEFDTLGKINWREL 403

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
              +   +    + E+ +  + +  EK  +        + L I +         +  + D
Sbjct: 404 TPPDCEHLDTRAIAEVKANGISRIYEKQYIQRNGRRVSIVLGIALLDDSDEQGVAFVL-D 462

Query: 561 ISEWKQEKNKLSH-------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
           ISE K  + +          A+K AE  +  K +FLA +SHE+RTPL  I+G+S++++++
Sbjct: 463 ISERKLAEQQRDRLLCAERIARKDAEIANRIKDEFLAVLSHELRTPLNPILGWSKLLRSR 522

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
           +F      R       I+R+  L   ++ DLLD+S+I  GK++L+  PVSL   +  AI 
Sbjct: 523 QFDAATTDRA---LETIERNATLQTQLIEDLLDVSRILQGKLSLNVCPVSLPIVIGAAID 579

Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
            V+L A  K I I+  F   + +++ D   ++Q+  N+LSNA+ FT  GG + I      
Sbjct: 580 TVRLAAEAKEIKIQNVFDPELGQVMGDANRLQQVVWNLLSNAVKFTSPGGTVEIHLKAV- 638

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
           N++  ++V DTG G+T   L      F Q   +   +  G GLGL + + +V+ + G   
Sbjct: 639 NDQAQIQVIDTGKGITPEFLPYVFDYFRQADGTTTRKFGGLGLGLAIVRQVVELHGGTVQ 698

Query: 794 IFS-TPAKGTLIEIIFPLYDTSH 815
             S     G    +  PL     
Sbjct: 699 ATSPGEGLGATFTVNLPLSPKHE 721



 Score = 57.7 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 24/216 (11%), Positives = 60/216 (27%), Gaps = 4/216 (1%)

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
             +   L + ++        L     + +  L    I      + PE +    ++ E   
Sbjct: 19  RQRIAELEQLEKQYQYKQVELERRIEDLQAKLRTPNIANVDIERHPEPVTLQRLQQEISQ 78

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR--KPF 497
            +     +     +    L+A + G    N     +  +     LFG          + F
Sbjct: 79  RQQVDAALTESEERWRLALDAANLGFWDWNVLTEKVVWSENHELLFGLVPGSFDGAYETF 138

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYS 555
              +       +   ++  L+       E   +   K    ++ +               
Sbjct: 139 LCCVHPEDRESVMQVISACLNNKTDYYDEFRIVWPEKSIHWIAAKGRFFYNEQGQPVRMI 198

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
               DI+E K+ +          +++++  +  LA 
Sbjct: 199 GVCMDITESKRSEENTRQLATQVQEQANILNAILAT 234



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 42/417 (10%), Positives = 107/417 (25%), Gaps = 29/417 (6%)

Query: 48  SFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIG 107
           +  + +  +  Q +       +  N  +   +       + ++  G+ + +S      +G
Sbjct: 205 TESKRSEENTRQLATQVQEQANILNAILATSVDH----IYILNRTGHYQYVSYGGAAVLG 260

Query: 108 NYAFKMIGMRLCDV-SDILHIDP-NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAA 165
            +  +MIG  + ++      ID  N     ++K       +      +G + Y   +   
Sbjct: 261 LHPQQMIGKTVQEIDLPQELIDKMNGQFLTVMKVGEPIKDECEYVAEDGKHYY---EYIL 317

Query: 166 LPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF 225
            P+ + N    G     +              +  + +F  L E      +       I 
Sbjct: 318 TPLRNVNHSIEGV--ITVSRDMTEHKRAEQSIRNSEARFRRLFESNLIGVAFWNVDGFIT 375

Query: 226 SQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTK 285
                   +    +    T    +  ++   +   L T   + +                
Sbjct: 376 DANDAYLQIVGYTREEFDTLGKINWRELTPPDCEHLDTRAIAEVKANGISRIYEKQYI-- 433

Query: 286 KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYAN 345
            Q  G   +                          L  +  D+      +        AN
Sbjct: 434 -QRNGRRVSIVLGIALLDDSDEQGVAFVLDISERKLAEQQRDRLLCAERIARKDA-EIAN 491

Query: 346 P---SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT 402
                FL +  ++    +    G S LL + +       + +         I  +A L T
Sbjct: 492 RIKDEFLAVLSHELRTPLNPILGWSKLLRSRQFDAATTDRAL-------ETIERNATLQT 544

Query: 403 IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459
                     +      +        P +            +   E + +++ ++ +
Sbjct: 545 QLIED----LLDVSRILQGKLSLNVCPVSLPIVIGAAIDTVRLAAEAKEIKIQNVFD 597


>gi|99080183|ref|YP_612337.1| multi-sensor hybrid histidine kinase [Ruegeria sp. TM1040]
 gi|99036463|gb|ABF63075.1| multi-sensor hybrid histidine kinase [Ruegeria sp. TM1040]
          Length = 827

 Score =  352 bits (904), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 102/388 (26%), Positives = 187/388 (48%), Gaps = 16/388 (4%)

Query: 431 NGIEPEDVDTRINKRKME---IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
                     R  + ++E    E+ QL ++ +  SD I +   +  I   N A S++ GY
Sbjct: 291 AVRRATINTLRKRETELERNQAELEQLSTVAQNASDSIVLSGPDQRIFWVNEAFSRMTGY 350

Query: 488 PVEDILRKPFTVFLE-QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
            V++ + K     L    T       ++E +S   R  L +  L  TK  K + +   + 
Sbjct: 351 TVDEAVGKRPGELLNGPETDPATIREISEYISRGER--LHREILNYTKSGKTIWVDTNLV 408

Query: 547 KLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
            +               D++  KQ   +L+ AK  AE+    K++FLA +SHEIRTP+  
Sbjct: 409 PVLDEDGEINMVIGIERDVTSQKQNAAELAVAKVAAEQADRTKTEFLANMSHEIRTPMNG 468

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           IIG ++++         +    +Y   I  S   +L I+ND+LD++++ESGK++L     
Sbjct: 469 IIGMADLLSETEL----HEDQEQYVQIIRTSSKALLKIINDILDLTRMESGKLSLEPVDF 524

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPS 721
            L+  +  A+ +++  A+EK + +  ++A+ +PR + AD   ++QI +N++ NA+ FT S
Sbjct: 525 DLESCIENAVDILRPVASEKGLDLTVNYASGLPRTVRADDGRLRQILVNLVGNAVKFTAS 584

Query: 722 GGQ-IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
           G   + +    T+   + + V+DTG+GMT+ +L      F Q   +      GTGLGL +
Sbjct: 585 GRVDVRVLCASTNPYRLTIDVQDTGIGMTSAQLHNIFDRFSQADAATTRSFGGTGLGLTI 644

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           ++ +     G   ++S P +G+   +  
Sbjct: 645 SRLLAKQMDGDITVYSDPGRGSCFSLHI 672



 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/138 (11%), Positives = 38/138 (27%), Gaps = 6/138 (4%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTWYGKT 147
                +  ++E   +  G    + +G R  ++ +    DP     I + + R    + + 
Sbjct: 332 GPDQRIFWVNEAFSRMTGYTVDEAVGKRPGELLNGPETDPATIREISEYISRGERLHREI 391

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
             +   G    + +D   +P+   + E +     GI           A            
Sbjct: 392 LNYTKSGKT--IWVDTNLVPVLDEDGEINMV--IGIERDVTSQKQNAAELAVAKVAAEQA 447

Query: 208 HEIKKGHSSVEKEKYDIF 225
              K    +    +    
Sbjct: 448 DRTKTEFLANMSHEIRTP 465


>gi|167623448|ref|YP_001673742.1| multi-sensor hybrid histidine kinase [Shewanella halifaxensis
           HAW-EB4]
 gi|167353470|gb|ABZ76083.1| multi-sensor hybrid histidine kinase [Shewanella halifaxensis
           HAW-EB4]
          Length = 1180

 Score =  352 bits (904), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 110/505 (21%), Positives = 205/505 (40%), Gaps = 19/505 (3%)

Query: 313 AYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
              +         +      F V    G +   NP+   L  YK+ + I     L    +
Sbjct: 224 QALESANIRLNAILQTAVDGFVVVDTKGLIEEVNPAVSRLFGYKASELIGQNVSLLMPTN 283

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
              + D        L  ++   +     L   + +       +           + +   
Sbjct: 284 ERNVHDEYIQH--YLESAEDKMVGKGRELLAQKKDG---TLFSIELSISKMCIDDEVLFL 338

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
           G+  +  D +  +   +     L + LE + D +  I+  G +   N A   LF Y  E 
Sbjct: 339 GLVKDLSDVKRAQVAAQRTESILLATLEGSRDALITIDITGEVQEVNDAACLLFKYHSEQ 398

Query: 492 ILRKPF-TVFLEQNTPSVMNHYLTEILSLDLRQTLEK--ITLGSTKEEKLLSLRIIIKKL 548
           ++ +   +V          ++ L E         ++       S  + K +++ + +  +
Sbjct: 399 MIGQRLESVLFAGEEKLHFHNILEEYRVTGKGVAIKHSTQMQASRSDGKAVAVEVTLIPV 458

Query: 549 PFSSCYS--LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
              S       + DIS   + + +L  AK+ AE+ S  KS FLA +SHEIR+PL A++G 
Sbjct: 459 QLGSEMLLTAFIRDISRRMEYETQLKLAKEQAEQGSEAKSRFLATMSHEIRSPLNAVLGS 518

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
            ++I + R     N     YAN    +G  +L  +ND+LD SKIE+G+M L     S  +
Sbjct: 519 VDLILDSRL----NKEQRIYANTAKEAGTSLLSTINDILDFSKIEAGQMVLEESAFSPAK 574

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI 725
             ++ + ++   A +K I++      N+P  ++ D + ++Q+  N++ NAI F+  GG +
Sbjct: 575 LATQVLQVLSPKAQDKGIVLAIMVNRNVPESLVGDGQRLRQVLHNLIDNAIKFSF-GGCV 633

Query: 726 IISTTHTSNEEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
            I       +E  L  ++ D G+G++   L    + F Q+ +S      GTGLGL +   
Sbjct: 634 AIEMWLADTDEARLCCKISDQGIGISEQALPTLFEEFSQVHDSHNTNYSGTGLGLAICAE 693

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIF 808
           ++    G+  + S   KG+      
Sbjct: 694 LIAQMGGQIAVKSQQGKGSCFSFDL 718



 Score = 47.7 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 38/394 (9%), Positives = 103/394 (26%), Gaps = 37/394 (9%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLK-RQNTWYGK 146
           +D  G ++E++  + +  G  A ++IG  +  +      + ++  I   L+  ++   GK
Sbjct: 247 VDTKGLIEEVNPAVSRLFGYKASELIGQNVSLLMPTNERNVHDEYIQHYLESAEDKMVGK 306

Query: 147 TTLW---PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                    +GT   + + ++ + I             G+V         +   +R +  
Sbjct: 307 GRELLAQKKDGTLFSIELSISKMCIDDE------VLFLGLVKDLSDVKRAQVAAQRTESI 360

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLK----T 256
                E  +          ++               +  +    E      +        
Sbjct: 361 LLATLEGSRDALITIDITGEVQEVNDAACLLFKYHSEQMIGQRLESVLFAGEEKLHFHNI 420

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
            +   +T +  ++           +          +           +     S    ++
Sbjct: 421 LEEYRVTGKGVAIKHSTQMQASRSDGKAVAVEVTLIPVQLGSEMLLTAFIRDISRRMEYE 480

Query: 317 EGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
               L  E  ++               A   FL    ++    +    G   L+   +L+
Sbjct: 481 TQLKLAKEQAEQGSE------------AKSRFLATMSHEIRSPLNAVLGSVDLILDSRLN 528

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN----- 431
               I       +  + ++    +          + +    F  A    + +        
Sbjct: 529 KEQRIYANTAKEAGTSLLSTINDILDFSKIEAGQMVLEESAFSPAKLATQVLQVLSPKAQ 588

Query: 432 --GIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
             GI    +  R     +  +  +L  +L    D
Sbjct: 589 DKGIVLAIMVNRNVPESLVGDGQRLRQVLHNLID 622


>gi|253996594|ref|YP_003048658.1| multi-sensor signal transduction histidine kinase [Methylotenera
           mobilis JLW8]
 gi|253983273|gb|ACT48131.1| multi-sensor signal transduction histidine kinase [Methylotenera
           mobilis JLW8]
          Length = 845

 Score =  352 bits (904), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 118/528 (22%), Positives = 220/528 (41%), Gaps = 47/528 (8%)

Query: 318 GENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
               +   ++  P   + Y+  G     N +F  ++ Y + + I     L       K +
Sbjct: 324 ESLFSDMMIESMPGILYFYNYEGRFLRWNHNFQSVSGYTNRE-ITKMHPLDFFAPEEKAA 382

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
             N I  V    +        A L  +  + + +                 +   G+  +
Sbjct: 383 VANKISEVF---TKGQAF-VEASL--LSKDGKKTPYFFTGRNVTFKGTDCLV---GMGID 433

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             + +  + K+     +   ++E+ +  I   N +G I   N      FGY  + I+ K 
Sbjct: 434 ISERKNAELKLNESEQKYGELVESANSIILRWNAQGYITFLNSFGLHFFGYAFDQIVGKH 493

Query: 497 FTVFLEQNTPSVMNHY--LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554
               +  NT S       L + + LD +   + I   +    + + +    K +     +
Sbjct: 494 VIGTIVPNTDSAGRDLQMLMQQICLDTKVFEQNINENTRSNGERVWISWTNKVVLDGQGH 553

Query: 555 SL----TMHDISEWKQEK------------------NKLSHAKKIAEKESSHKSDFLARV 592
            +      +DI+E    +                   +L  A   AE     KS FLA +
Sbjct: 554 VVEILSIGNDITERLLAEQEIRELNASLEKRVTERTEELQTALIRAEAADKIKSAFLATM 613

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHE+RTPL +IIGF+ +I     GPL N +  +    +  S   +L+++ND+LDISKIE+
Sbjct: 614 SHELRTPLNSIIGFTGIILQGLAGPLNNEQTKQ-LGMVRGSARHLLELINDVLDISKIEA 672

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712
           G++ ++ E  +L   +   ++ +     +K +++ TS +  +  I++D R ++QI +N++
Sbjct: 673 GQLEVNSETFNLVALIERVVNSLTPMIEKKGLVLHTSISKELGEIVSDRRRLEQILINLV 732

Query: 713 SNAIHFTPSGGQIIISTTH----------TSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
           +NA  FT  G  I I+             T    + L V DTG+G+   +L+   KPF Q
Sbjct: 733 NNAAKFTEKGS-ITITAEIVNDLKDSLDTTPTRFLKLSVIDTGIGIKPDDLDLLFKPFHQ 791

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           I +      EGTGLGL + + +++   G+ Y  S  + G+   ++ P+
Sbjct: 792 IDSGLSRLHEGTGLGLAICRRLLELMGGQIYAVSEWSTGSKFTVLLPM 839



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 54/133 (40%), Gaps = 4/133 (3%)

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
                ++ E   DGI I + +   L  N ++  + GY  ++++    T  + Q+    + 
Sbjct: 24  EASYRALFEYAPDGILIADAQSYYLDANPSICNMLGYTRDELIGMHATDIVVQSEVPHIQ 83

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570
             L  I +   +    +  L   K+  + S  I+   +P  S     + DI+  K+++ +
Sbjct: 84  SALDIIQT---KSDYTREWLLRRKDGSVFSAEIMATTMPDGS-LLGLIRDITVLKEQQRE 139

Query: 571 LSHAKKIAEKESS 583
           +S   ++    + 
Sbjct: 140 ISQLSRLYAALTK 152



 Score = 50.8 bits (120), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 26/169 (15%), Positives = 54/169 (31%), Gaps = 20/169 (11%)

Query: 52  SNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAF 111
            +  + + +SV           F + P    +      DA  Y  + +  +   +G    
Sbjct: 9   QSTGEISNQSVHQIGEASYRALFEYAPDGILI-----ADAQSYYLDANPSICNMLGYTRD 63

Query: 112 KMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW---PIEGTNLYVPIDLAALPI 168
           ++IGM   D+     +    HI   L    T    T  W     +G+     I    +P 
Sbjct: 64  ELIGMHATDIVVQSEV---PHIQSALDIIQTKSDYTREWLLRRKDGSVFSAEIMATTMP- 119

Query: 169 YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSV 217
              +    G      +    V  + +    +L + ++ L +I +    +
Sbjct: 120 ---DGSLLGL-----IRDITVLKEQQREISQLSRLYAALTKINQAIIWL 160



 Score = 45.4 bits (106), Expect = 0.039,   Method: Composition-based stats.
 Identities = 27/249 (10%), Positives = 61/249 (24%), Gaps = 22/249 (8%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH-IDPNNHIGDLLKRQNTWYGKTTLW 150
            G     +       G    ++  M   D           N I ++  +   +  + +L 
Sbjct: 345 EGRFLRWNHNFQSVSGYTNREITKMHPLDFFAPEEKAAVANKISEVFTKGQAFV-EASLL 403

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSG---FRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
             +G     P       +      F G     G GI        +        ++K+  L
Sbjct: 404 SKDG--KKTPYFFTGRNV-----TFKGTDCLVGMGI--DISERKNAELKLNESEQKYGEL 454

Query: 208 HEIKKGHSSVEKEKYDIFSQQS--------PPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
            E           +  I    S            +  K+ + ++          L+    
Sbjct: 455 VESANSIILRWNAQGYITFLNSFGLHFFGYAFDQIVGKHVIGTIVPNTDSAGRDLQMLMQ 514

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
            +    +       +    N  +         + +      E LS  N  +     ++  
Sbjct: 515 QICLDTKVFEQNINENTRSNGERVWISWTNKVVLDGQGHVVEILSIGNDITERLLAEQEI 574

Query: 320 NLTPETVDK 328
                +++K
Sbjct: 575 RELNASLEK 583


>gi|322436333|ref|YP_004218545.1| multi-sensor signal transduction histidine kinase [Acidobacterium
           sp. MP5ACTX9]
 gi|321164060|gb|ADW69765.1| multi-sensor signal transduction histidine kinase [Acidobacterium
           sp. MP5ACTX9]
          Length = 797

 Score =  352 bits (904), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 102/656 (15%), Positives = 208/656 (31%), Gaps = 52/656 (7%)

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ---SPPPHLRMKNKVS 241
              R      +         S + +       V      I              +++ V 
Sbjct: 167 RAGRSRLRVESALSVERNFVSAMLDTVGALVLVRDTAGRIVRFNRTCEAVSGYDLQSMVG 226

Query: 242 SLTEYYAHKDDVL--KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE- 298
                    ++ +      +  + +  S    +  +   + +          L +   + 
Sbjct: 227 RYVWEKLIPENEVAESVSTFERIVNGSSPTSFENHWLRRDGSLRRIAWSATALVDPQGQT 286

Query: 299 ---SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKY 354
                  +             E E    + ++        +   G L   N        Y
Sbjct: 287 NFIISTGIDVTEQREAEDTLRESEARYRQLIEGSLGMVCTHDLEGKLLSVNLHGAQSVGY 346

Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
           +  + I     L        L+ +         R  +    A  RL+    N    +   
Sbjct: 347 EVEELIGRNLAL-------LLAPSRRPHFQDYLRQVQQTGEAQGRLYLTHRNGSERIIAY 399

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII 474
                +           G   +  +    + K+   + Q  SILE+  DGI  ++ EG +
Sbjct: 400 RNKLIEI--AGREPYVLGFGVDISEQVQAEGKLRNLIDQSNSILESVGDGIYGLDLEGRV 457

Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNT-----PSVMNHYLTEILSLDLRQTLEKIT 529
              N A +++ GY   ++L +     +             +  +   +       +    
Sbjct: 458 TVVNPAAAQMLGYKPHELLGRNMHEVIHHTRADGSAHDFHDCAVMRAIDALDTMRVSDEV 517

Query: 530 LGSTKEEKLLSLRIII----------KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579
               K+     +  +            +   +    +   D +E +Q             
Sbjct: 518 FWR-KDGTCFPVEYVARPQIEASEDGIRPGRAVGVVVAFADTTERRQL------------ 564

Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639
                K +F++ VSHE+RTPLT++      +           +  +       + + ++ 
Sbjct: 565 --DRMKDEFISTVSHELRTPLTSLRAAL-GLVTGGALATRPDKMKQMLQIAIANTDRLVR 621

Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA 699
           +VND+LDI +I SG   L     + ++ +  A  + Q    +  +  R    +N  R+ A
Sbjct: 622 LVNDILDIERIGSGSSELRPVMSAAEDLLERATKIHQGATFKHNVRFRVE--SNDVRVWA 679

Query: 700 DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKP 759
           D   + Q   N++SNAI F+P  G+I ++  +   +E    + D G G+    LE   + 
Sbjct: 680 DPDRILQALSNLISNAIKFSPPEGEITLTARYLDEQEAQFDISDQGPGIPQDRLENIFER 739

Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
           F Q+  S      GTGLGL + ++++  + G+ +  S P KG       P    +H
Sbjct: 740 FQQVDASDTRAMGGTGLGLAICRSIIAQHGGRIWASSPPGKGATFHFTLPTKAVAH 795



 Score = 73.5 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/382 (7%), Positives = 91/382 (23%), Gaps = 16/382 (4%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH--IDPNNHIGDLLKRQNTWYGKT 147
           D  G +   +       G     M+G  + +     +   +  +    ++   +    + 
Sbjct: 201 DTAGRIVRFNRTCEAVSGYDLQSMVGRYVWEKLIPENEVAESVSTFERIVNGSSPTSFEN 260

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                +G+     I  +A  +     + +     GI        +     +  + ++  L
Sbjct: 261 HWLRRDGSLRR--IAWSATALVDPQGQTNFIISTGI--DVTEQREAEDTLRESEARYRQL 316

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
            E   G       +  + S              ++                 +  L   +
Sbjct: 317 IEGSLGMVCTHDLEGKLLSVNLHGAQSVGYEVEELIGRNLALLLAPSRRPHFQDYLRQVQ 376

Query: 266 ESS-LPEQEDFHTINLNQYTKKQYFGTLQNNSKES---FEYLSHRNHPSLSAYFDEGENL 321
           ++     +      N ++         ++   +E       +                + 
Sbjct: 377 QTGEAQGRLYLTHRNGSERIIAYRNKLIEIAGREPYVLGFGVDISEQVQAEGKLRNLIDQ 436

Query: 322 TPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
           +   ++      + +   G +   NP+   +  YK  + +        +         + 
Sbjct: 437 SNSILESVGDGIYGLDLEGRVTVVNPAAAQMLGYKPHELL-GRNMHEVIHHTRADGSAHD 495

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAM--TFIPFEKANQFPENMPQNGIEPEDV 438
                + R+                       +     P  +A++      +        
Sbjct: 496 FHDCAVMRAIDALDTMRVSDEVFWRKDGTCFPVEYVARPQIEASEDGIRPGRAVGVVVAF 555

Query: 439 DTRINKRKMEIEVMQLCSILEA 460
                +R+++    +  S +  
Sbjct: 556 ADTTERRQLDRMKDEFISTVSH 577



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 23/189 (12%), Positives = 67/189 (35%), Gaps = 7/189 (3%)

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471
           A+  +  +   +F  N     ++         +  + +E   + ++L+     + + +  
Sbjct: 144 ALQVLARQVTTRFELNARVRHMDRAGRSRLRVESALSVERNFVSAMLDTVGALVLVRDTA 203

Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFT-VFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530
           G I+  NR    + GY ++ ++ +      + +N  +        I++     + E   L
Sbjct: 204 GRIVRFNRTCEAVSGYDLQSMVGRYVWEKLIPENEVAESVSTFERIVNGSSPTSFENHWL 263

Query: 531 GSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
                 + ++        P         T  D++E ++ ++ L   ++   +        
Sbjct: 264 RRDGSLRRIAWSATALVDPQGQTNFIISTGIDVTEQREAEDTL---RESEARYRQLIEGS 320

Query: 589 LARV-SHEI 596
           L  V +H++
Sbjct: 321 LGMVCTHDL 329



 Score = 67.7 bits (164), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 32/254 (12%), Positives = 74/254 (29%), Gaps = 16/254 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP------NNHIGDLLKR 139
            + +D  G +  ++    + +G    +++G  + +V      D       +  +   +  
Sbjct: 448 IYGLDLEGRVTVVNPAAAQMLGYKPHELLGRNMHEVIHHTRADGSAHDFHDCAVMRAIDA 507

Query: 140 QNTWY-GKTTLWPIEGTNLYVPIDLAALPI--YSRNREFSGFRGFGIVHVNRVDNDPRAL 196
            +T        W  +GT    P++  A P    S +    G R  G+V       + R L
Sbjct: 508 LDTMRVSDEVFWRKDGTCF--PVEYVARPQIEASEDGIRPG-RAVGVVVAFADTTERRQL 564

Query: 197 GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256
            +  D+  S +    +   +  +    + +           +K+  + +      D L  
Sbjct: 565 DRMKDEFISTVSHELRTPLTSLRAALGLVTG---GALATRPDKMKQMLQIAIANTDRLVR 621

Query: 257 EKYPLLTSEE-SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
               +L  E   S   +            ++          K +  +    N   + A  
Sbjct: 622 LVNDILDIERIGSGSSELRPVMSAAEDLLERATKIHQGATFKHNVRFRVESNDVRVWADP 681

Query: 316 DEGENLTPETVDKC 329
           D         +   
Sbjct: 682 DRILQALSNLISNA 695


>gi|329925067|ref|ZP_08280011.1| PAS domain S-box protein [Paenibacillus sp. HGF5]
 gi|328940186|gb|EGG36518.1| PAS domain S-box protein [Paenibacillus sp. HGF5]
          Length = 609

 Score =  352 bits (903), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 84/377 (22%), Positives = 160/377 (42%), Gaps = 26/377 (6%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           R    + E E  +L SIL   SDG+   +  G ++  NR   ++ G   E++        
Sbjct: 250 REALSQNEEEKEKLASILTNMSDGVIATDEAGRVILMNRRAGEMLGVEGEELAGHDIVSL 309

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSL 556
           L             E L+       + + +   +  +   +R+    +            
Sbjct: 310 LGLEQSES------EALARGEGHDSKLLEITPREGGEPFMMRVTFTPIHRREIGITGTIA 363

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            + D++E ++ +              + + +F+A VSHE+RTPLT I  ++E +++    
Sbjct: 364 VLQDVTEQEKLE--------------ASRREFVANVSHELRTPLTTIKSYTEALEDGAL- 408

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
                    +   I      ++ +V DLL +S+++S +  LH E   + E + +      
Sbjct: 409 -EDKQMGPRFVGVIQNETGRMIRLVTDLLHLSRLDSKEAALHKERTDIVEMLEDVEDRFS 467

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
               +K I         +   + D   + Q+  N++SNA+ +TP GG I +  + T    
Sbjct: 468 FQMKQKHIRTIIEVKPGVSTAMLDRDGIDQVLDNLISNALKYTPDGGTITMDASITEEGM 527

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           + L V+DTG+G+   +L++  + F ++  ++     GTGLGL +A+ +V A+ G   + S
Sbjct: 528 LSLSVKDTGIGIPKKDLDRIFERFYRVDKARTRNLGGTGLGLSIAREIVRAHGGFITLQS 587

Query: 797 TPAKGTLIEIIFPLYDT 813
              KGT +    PL D 
Sbjct: 588 ELEKGTTVTFTLPLDDE 604



 Score = 46.2 bits (108), Expect = 0.023,   Method: Composition-based stats.
 Identities = 18/147 (12%), Positives = 41/147 (27%), Gaps = 7/147 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            D  G +  ++    + +G    ++ G    D+  +L ++ +    + L R      K  
Sbjct: 277 TDEAGRVILMNRRAGEMLGVEGEELAGH---DIVSLLGLEQSES--EALARGEGHDSKLL 331

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                       + +   PI+ R    +G     ++          A  +      SH  
Sbjct: 332 EITPREGGEPFMMRVTFTPIHRREIGITGT--IAVLQDVTEQEKLEASRREFVANVSHEL 389

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLR 235
                      E  +  + +      R
Sbjct: 390 RTPLTTIKSYTEALEDGALEDKQMGPR 416



 Score = 40.0 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 12/151 (7%), Positives = 31/151 (20%), Gaps = 16/151 (10%)

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIA 363
                   +  +E +      +             G +   N     +   +  +++   
Sbjct: 246 TSRLREALSQNEEEKEKLASILTNMSDGVIATDEAGRVILMNRRAGEMLGVEG-EELAGH 304

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
             +S L      S+        L R +         L            M         +
Sbjct: 305 DIVSLLGLEQSESEA-------LARGEGHDSKL---LEITPREGGEPFMMRVTFTPIHRR 354

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
                    +  +  +      K+E    + 
Sbjct: 355 EIGITGTIAVLQDVTEQ----EKLEASRREF 381


>gi|163759100|ref|ZP_02166186.1| putative sensor histidine kinase transmembrane protein [Hoeflea
           phototrophica DFL-43]
 gi|162283504|gb|EDQ33789.1| putative sensor histidine kinase transmembrane protein [Hoeflea
           phototrophica DFL-43]
          Length = 795

 Score =  352 bits (903), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 133/679 (19%), Positives = 250/679 (36%), Gaps = 56/679 (8%)

Query: 184 VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL 243
             +NR          R          I    +        + S               + 
Sbjct: 117 ARLNRALGAMPEDQGRYLLVIDAEARIFAATAGGNHLVGTVLSSLLSESSPLWLFGERAG 176

Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303
            +      +        L     + L         +  + +           S      L
Sbjct: 177 VQSIRFDGEDSLAALTRLPDGAGALLSLTPVKTMNDAWRQSVSVNVTLFIATSSILLVIL 236

Query: 304 -----SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSV 357
                         + + E +      + +     + +       Y + S   +   K  
Sbjct: 237 YAYFSQAGRAQEADSIYHESQRRVDMALSRGRCGLWDWDMARGRLYWSRSMYEILGLKPR 296

Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
           D +   G  S L       D+  +  +    +          L  ++    + L M    
Sbjct: 297 DTVISFGEASQL----VHPDDGDLYEIARKVASGDIKQVD-HLFRMRHANGHYLWMRARA 351

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
               +         GI  +  +    +++      +L   +E+TS+   + +R+  ++  
Sbjct: 352 QVV-DPTSAETHLIGIAMDVTEQHRLQQRTMEADQRLFDAIESTSEAFVLWDRDERLVLW 410

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
           N+   ++ G P + +        +     +     +   L++   +   +       + +
Sbjct: 411 NKHYQEIHGLPADILAPGTPRPVV---EKAATRPVVERRLAVPCARDSAQTFEVQLGDGR 467

Query: 538 LLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK---------------------- 575
            L +     +            DI+  K+ + +L  ++                      
Sbjct: 468 WLQINERKTR---DGGLVSVGTDITPLKRNQERLRDSEKRLMATIGDLTSSQAELKRKAA 524

Query: 576 -------------KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
                        + AE  S  KS+FLA +SHE+RTPL AIIGFSEV++ + FGPLG+ +
Sbjct: 525 ELSELNMDYQVETERAEAASRAKSEFLANMSHELRTPLNAIIGFSEVLQARMFGPLGSDK 584

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
           Y EYA+ I  SG  +L ++ND+LD++KIE+G+M L  E V L   + E + LV + A +K
Sbjct: 585 YGEYADDIHNSGIHLLTVINDILDMAKIEAGQMQLEREDVDLAPLLKETLRLVAIQAEQK 644

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
            I +    +  +  + AD R++KQI LN+LSNA+ FT  GG+I++    T +  V L + 
Sbjct: 645 DIRVDQRISAKL-SLNADRRAMKQILLNLLSNAVKFTEPGGKILVRARKT-SCAVTLTIE 702

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG+G+    L +  +PF Q+ N       G+GLGL +++++ + + G   + S    GT
Sbjct: 703 DTGIGIPKALLNRIGQPFEQVQNQFSKSTGGSGLGLAISRSLAELHGGAMKVRSIEGMGT 762

Query: 803 LIEIIFPL-YDTSHPHDCI 820
           ++ +  P+      P   I
Sbjct: 763 IVSVRVPINCPEDQPSSMI 781


>gi|309791480|ref|ZP_07685984.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides
           DG6]
 gi|308226477|gb|EFO80201.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides
           DG6]
          Length = 690

 Score =  352 bits (903), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 125/545 (22%), Positives = 224/545 (41%), Gaps = 27/545 (4%)

Query: 284 TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY 343
            ++Q    L   ++ + E    +     +                 P     +S G   Y
Sbjct: 15  LREQQMTALLALTRSTTEAPDMQTALIRALELIAATGRWSYGEVWQP-----HSEGGTLY 69

Query: 344 ANPSFLL----LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS-- 397
              S+      L  + ++  +        LL     + +N   P  L   ++        
Sbjct: 70  RVASWPREAHTLLAFATLRAVLRITPGEGLLGWAWQNQHNLWLP-DLAAVEQDVTTFQQV 128

Query: 398 ----ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE----DVDTRINKRKMEI 449
               A L  I+ + +    +     E        +   G+        +     +  +  
Sbjct: 129 GLSSALLLPIRLHEQPIALLVLFGREVQPLDAALLHLIGMATAQVGAALKRLQQQAAIAE 188

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
               L  +L+A  D + I + +  +L  N A  ++FGYP  + L  P T  +        
Sbjct: 189 RERLLHLMLDAAPDAMLIADGDEHVLVWNAAAERMFGYPAAEALGLPITRLIAARDAHTY 248

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR--IIIKKLPFSSCYSLTMHDISEWKQE 567
              + +                  ++         +   +      ++  + D++E +Q 
Sbjct: 249 FSLIAD-QRQGPTLDATIEVHARRRDGSEFPSEFGLAAWRSLQGEYFTCVVRDVTERQQN 307

Query: 568 KNKLSHAK--KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           +  L   +     E+ +  K++FLA +SHE+RTPL  I+  +E +    +G L N R  +
Sbjct: 308 QAALRTIEASTELERVAQLKNEFLANMSHELRTPLNTILSLTEAVSEGVYG-LLNDRQQQ 366

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
             + +  SG  +L IVND+LD+ KIE+GK+ L  EPV ++   + ++ +V+  A  KRI 
Sbjct: 367 VLDVVTESGQHLLGIVNDILDMIKIEAGKIELLIEPVEIESICAASMRMVRQIAYAKRIQ 426

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-VILRVRDT 744
           I +   + +  I AD R +KQI +N+LSNA+ FTP GG++ +     +  + V L V DT
Sbjct: 427 IASQIDHQVDLIEADPRRLKQILVNLLSNAVKFTPEGGRVTLVVRGDAEAQLVYLSVEDT 486

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G+ + +L +  +PF Q+      R EGTGLGL L   + + + G   I STP  G+  
Sbjct: 487 GIGIAHTDLPRLFRPFVQLDARLSRRHEGTGLGLALVAHLTELHNGGVRIQSTPGTGSCF 546

Query: 805 EIIFP 809
            I+ P
Sbjct: 547 TIMLP 551



 Score = 45.0 bits (105), Expect = 0.046,   Method: Composition-based stats.
 Identities = 33/335 (9%), Positives = 84/335 (25%), Gaps = 20/335 (5%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGKTT 148
           D   ++   +    +  G  A + +G+ +  +          + I D  +          
Sbjct: 208 DGDEHVLVWNAAAERMFGYPAAEALGLPITRLIAARDAHTYFSLIADQRQGPTLDATIEV 267

Query: 149 L-WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK--FS 205
                +G+    P +       S   E+       +V         +A  + ++      
Sbjct: 268 HARRRDGS--EFPSEFGLAAWRSLQGEYFT----CVVRDVTERQQNQAALRTIEASTELE 321

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
            + ++K    +    +              +   V  L      +   + TE    L   
Sbjct: 322 RVAQLKNEFLANMSHELRTPLNTILSLTEAVSEGVYGLLNDRQQQVLDVVTESGQHLLGI 381

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE- 324
            + + +        +    +     ++   S      +++     +++  D   +L    
Sbjct: 382 VNDILDMIKIEAGKIELLIEPVEIESICAASMRMVRQIAYAKRIQIASQIDHQVDLIEAD 441

Query: 325 -------TVDKCPIPF-FVYSHGNLFYANPS-FLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
                   V+       F    G +             Y SV+D  I    + L    + 
Sbjct: 442 PRRLKQILVNLLSNAVKFTPEGGRVTLVVRGDAEAQLVYLSVEDTGIGIAHTDLPRLFRP 501

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
                 +    +      +A  A L  +       
Sbjct: 502 FVQLDARLSRRHEGTGLGLALVAHLTELHNGGVRI 536


>gi|261418255|ref|YP_003251937.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y412MC61]
 gi|319767785|ref|YP_004133286.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y412MC52]
 gi|261374712|gb|ACX77455.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y412MC61]
 gi|317112651|gb|ADU95143.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y412MC52]
          Length = 582

 Score =  352 bits (903), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 97/395 (24%), Positives = 178/395 (45%), Gaps = 22/395 (5%)

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINK--RKMEIEVMQLCSILEATSDGIAIINREGII 474
                +               +   + +  R  EI+  +L +++E    G+  I+  G I
Sbjct: 204 AARVPDGEYNEAGMLVRSINRLARHLQEMSRAREIQTDRLHTLIENVGSGLLFIDHRGHI 263

Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
              NRA    F     D L +P+   L           +   ++    +   ++T+G  +
Sbjct: 264 SLINRAFQTQFHLDPSDCLHRPYADVLPHGDIVRFIDDI--FITETTMRRHMRLTIGIER 321

Query: 535 EEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
           +   +    II          +  HDI+E K+ +                + DF+A VSH
Sbjct: 322 KHFDVYGAPIIGTNAEWKGIVVVFHDITELKRLE--------------QIRKDFVANVSH 367

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           E++TP+T+I GF+E + +             +   I +    +  +V +LLD+SKIE   
Sbjct: 368 ELKTPVTSIKGFAETLLDGAM--KDEAALEHFLTIILKESERLQTLVEELLDLSKIEQHG 425

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714
             L  E V + + ++EA ++ +  A EK+I +     + +  I  D   +KQI LN+L+N
Sbjct: 426 FQLQLEDVDIAQVIAEAAAVFRQKAAEKQIDLHIESPSGL-VIRGDRNRMKQILLNLLAN 484

Query: 715 AIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           AI +TP  G++ +     + +EV++ V+DTG+G+   E+ +  + F ++  ++     GT
Sbjct: 485 AITYTPEHGRVAVEAE-ETEKEVLIHVKDTGIGIEEKEIPRIFERFYRVDKARSRDSGGT 543

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GLGL + K +V+A+ G   + S   +GT+  I FP
Sbjct: 544 GLGLAIVKHLVEAHHGYITVASKVGRGTVFTIHFP 578


>gi|261410065|ref|YP_003246306.1| multi-sensor signal transduction histidine kinase [Paenibacillus
           sp. Y412MC10]
 gi|261286528|gb|ACX68499.1| multi-sensor signal transduction histidine kinase [Paenibacillus
           sp. Y412MC10]
          Length = 609

 Score =  352 bits (903), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 84/377 (22%), Positives = 160/377 (42%), Gaps = 26/377 (6%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           R    + E E  +L SIL   SDG+   +  G ++  NR   ++ G   E++        
Sbjct: 250 REALSQNEEEKEKLASILTNMSDGVIATDEAGRVILMNRRAGEMLGVEGEELAGHDIVSL 309

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSL 556
           L             E L+       + + +   +  +   +R+    +            
Sbjct: 310 LGLEESES------EALARGEGHDSKLLEITPREGGEPFMMRVTFTPIHRREIGITGTIA 363

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            + D++E ++ +              + + +F+A VSHE+RTPLT I  ++E +++    
Sbjct: 364 VLQDVTEQEKLE--------------ASRREFVANVSHELRTPLTTIKSYTEALEDGAL- 408

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
                    +   I      ++ +V DLL +S+++S +  LH E   + E + +      
Sbjct: 409 -EDKQMGPRFVGVIQNETGRMIRLVTDLLHLSRLDSKEAALHKERTDIVEMLEDVEDRFS 467

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
               +K I         +   + D   + Q+  N++SNA+ +TP GG I +  + T    
Sbjct: 468 FQMKQKHIRTIIEVKPGVSTAMLDRDGIDQVLDNLISNALKYTPDGGTITMDASITEEGM 527

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           + L V+DTG+G+   +L++  + F ++  ++     GTGLGL +A+ +V A+ G   + S
Sbjct: 528 LSLSVKDTGIGIPKKDLDRIFERFYRVDKARTRNLGGTGLGLSIAREIVRAHGGFITLQS 587

Query: 797 TPAKGTLIEIIFPLYDT 813
              KGT +    PL D 
Sbjct: 588 ELEKGTTVTFTLPLDDE 604



 Score = 45.8 bits (107), Expect = 0.031,   Method: Composition-based stats.
 Identities = 18/147 (12%), Positives = 41/147 (27%), Gaps = 7/147 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            D  G +  ++    + +G    ++ G    D+  +L ++ +    + L R      K  
Sbjct: 277 TDEAGRVILMNRRAGEMLGVEGEELAGH---DIVSLLGLEESES--EALARGEGHDSKLL 331

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                       + +   PI+ R    +G     ++          A  +      SH  
Sbjct: 332 EITPREGGEPFMMRVTFTPIHRREIGITGT--IAVLQDVTEQEKLEASRREFVANVSHEL 389

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLR 235
                      E  +  + +      R
Sbjct: 390 RTPLTTIKSYTEALEDGALEDKQMGPR 416



 Score = 40.0 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 11/151 (7%), Positives = 30/151 (19%), Gaps = 16/151 (10%)

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIA 363
                   +  +E +      +             G +   N     +   +  +++   
Sbjct: 246 TSRLREALSQNEEEKEKLASILTNMSDGVIATDEAGRVILMNRRAGEMLGVEG-EELAGH 304

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
             +S L            +   L R +         L            M         +
Sbjct: 305 DIVSLL-------GLEESESEALARGEGHDSKL---LEITPREGGEPFMMRVTFTPIHRR 354

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
                    +  +  +      K+E    + 
Sbjct: 355 EIGITGTIAVLQDVTEQ----EKLEASRREF 381


>gi|163851983|ref|YP_001640026.1| PAS sensor protein [Methylobacterium extorquens PA1]
 gi|163663588|gb|ABY30955.1| PAS sensor protein [Methylobacterium extorquens PA1]
          Length = 846

 Score =  352 bits (903), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 176/783 (22%), Positives = 301/783 (38%), Gaps = 78/783 (9%)

Query: 34  FETEKSKKENPCHD--SFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDA 91
           F++  +K + P  D  S    +        +S    ++             +R  W  DA
Sbjct: 137 FDSGPAKADPPPADVGSDVAKHEASSPSPVLSPAPEVE--------TAELPLRVIWRSDA 188

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151
            G L  +S   P      A  + G     ++    I+    + D L  + T+     L  
Sbjct: 189 DGVLTHVSRTHPDL----AEALSGRSWAMLAADGVIEGA-ALTDALAGRRTFRTLPLL-- 241

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
           + G      ++++  P      +FSGF GF I+     +   R + + ++ +      ++
Sbjct: 242 VRGRAYEHALEVSGAPAGRSTDDFSGFGGFAIL----GERHARVMERAVEDEEDGPENLQ 297

Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271
           +     E E     S         +  +V  L        D        L          
Sbjct: 298 EEPPVDETEAEAGLSVNEHAAFREVA-RVLGLRFAPDEDGDDAAPMPARL---------- 346

Query: 272 QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI 331
                                  ++              LS           E ++  P+
Sbjct: 347 ----------------------ESAPSGSVMPFPIPQGRLSEAETRARLALTELLESLPL 384

Query: 332 PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR 391
              VY    + +A+ +FL LT Y  +  +  A GL+ L       D   I PV   R + 
Sbjct: 385 GVLVYRGSEMLFASRTFLDLTGYADLPALRQA-GLAHLFRGLPPRDREIIGPVPFARPEG 443

Query: 392 TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV 451
             +A       + W    +          A              +     I      +  
Sbjct: 444 GTVALLVDRAGLVWEGAQAEICLARAMPAAG-------------DIQLPAIPANAARLRA 490

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
            +   +L++  DG+  ++ EG ++  N + ++L     ++++   F       + S +  
Sbjct: 491 EK---VLDSLEDGVVTLDAEGRVVGLNPSAAELVHAHPKEVVGGRFADLFAPESLSALET 547

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571
            +T+       +               L LRI       +  Y  ++ +I +        
Sbjct: 548 AVTDSRRSGTSEVHGVTVRTGAA---ALRLRIARLLGEDAPGYCASLREIRDEDVAPPAP 604

Query: 572 SHAKKIAEKESSH---KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
                   +  +    K++ LARVS EIR  L AI+G ++++ + RF      R   Y  
Sbjct: 605 VAEPARRSEPEAEGVWKANALARVSREIRPSLNAILGLTDMMLSDRFDRADAERLEAYLR 664

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            +  SG  +  +++DL D+++I++G+  L F  ++L+E V+  I+  Q  A   RI++RT
Sbjct: 665 EVRLSGGRIAGLIDDLRDLAEIQAGRGKLTFADLALNELVASCIAAQQPQAARDRIVLRT 724

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748
           S A N+P + AD RS++Q AL +L NAI  T +GGQ+I+STT     EV LRVRDTG GM
Sbjct: 725 SLAPNLPAMKADERSIRQAALTVLGNAIRVTEAGGQVIVSTTLAEQGEVALRVRDTGTGM 784

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           T  EL  A++PFG         G+  G GL L KA+V+AN G+F I S   +GTL+E++F
Sbjct: 785 TEDELMSALEPFG-ADLGAVPEGDEKGFGLTLTKALVEANRGRFRISSRKDEGTLVEMLF 843

Query: 809 PLY 811
           P  
Sbjct: 844 PAA 846


>gi|300868056|ref|ZP_07112694.1| Sensor protein [Oscillatoria sp. PCC 6506]
 gi|300333976|emb|CBN57872.1| Sensor protein [Oscillatoria sp. PCC 6506]
          Length = 1224

 Score =  352 bits (903), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 102/437 (23%), Positives = 187/437 (42%), Gaps = 53/437 (12%)

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-- 487
              +    ++ +  +  +    ++  SI E   +GI     +G  +S N A++ ++GY  
Sbjct: 518 VGEMLANALERKRAEEALRQAEIKYRSIFENAVEGIFQSTADGRYISANPALAHIYGYSN 577

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
           P E + +           P+    +L  + + +     E        +  ++ +    + 
Sbjct: 578 PEEMLAQLTDIGSQLYVDPNRRQEFLAAMETQNEILRFESEVYRR--DGSIIWISENARA 635

Query: 548 LPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
           +  S         T+ DIS+ K+ +     A + AE  +  KS FLA +SHE+RTPL AI
Sbjct: 636 VRASGGAISCYEGTVEDISDRKKAEVSCQLALEAAESANRAKSTFLANMSHELRTPLNAI 695

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           IG+SE++  +    L    +I   + I  +G  +L ++ND+LDISKIE+G+M+++ E   
Sbjct: 696 IGYSEMLAEEAED-LAVKDFIPDLDKIRTAGKHLLSLINDILDISKIEAGRMDVYLENFD 754

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
           +   +   ++  Q    +    ++    N+   + AD+  ++QI LN+LSNA  FT  G 
Sbjct: 755 IPALIDGVVATAQPLVEKNGNTLKVLCPNSTGTMYADVTKMRQILLNLLSNAAKFTQEG- 813

Query: 724 QIIISTTHTSN-------------------------------------EEVILRVRDTGV 746
            I ++     +                                     + +I RV DTG+
Sbjct: 814 TITLTVERVKHEKLTSPEVNFIPEQSQGTLLGLLQNPDILSQFLIYDCDSLIFRVADTGI 873

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           GM   +L++  +PF Q   S   +  GTGLGL +++       G   + S   +GT+  +
Sbjct: 874 GMNPQQLKQLFQPFTQGDASTTRKYGGTGLGLAISQRFCQMMGGDIAVESALGEGTVFTV 933

Query: 807 IFP------LYDTSHPH 817
           + P      L +   P 
Sbjct: 934 VLPSEFSDRLAENPEPE 950



 Score = 99.3 bits (246), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 39/367 (10%), Positives = 105/367 (28%), Gaps = 32/367 (8%)

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
            H    L+     L +    +   Q+    +N             +    ++    +   
Sbjct: 3   PHLKRQLQELGLSLESPPLGAQQWQQFLEQVNDRY-------SRQEQELIDAKPLDAEAE 55

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGL 366
                A      +     +D   +        G + Y NP    L  +    ++  A  L
Sbjct: 56  ALDYEASGLWEVDGLSAVLDSLGVGLCTLDTRGYVLYINPEGERLLGWG-FSELAGAPLL 114

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA----- 421
           + +      +               +     AR   +      ++       +       
Sbjct: 115 ARIGVTLGKAGTRVQGEGGNKHEGASESEIKARKSQLSLREAIAIGQACSNSDGKFLCQD 174

Query: 422 -----------NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470
                           +     +  +  + +    ++E  +  L ++ E+T  GI  ++R
Sbjct: 175 GTILSVCYFFNPIVGGDGSGVLVFFDIAERQRLMGELERSLSMLQAVFESTDAGILALDR 234

Query: 471 EGIILSTNRAVSKLFGYPVEDIL------RKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
           +G + + N+   +++G     +L        P  +            +L   + L     
Sbjct: 235 QGKVSNFNQKFVEMWGLVDNAMLLAQPGNGPPTALPFVIRQLKYPQAFLKTAIKLSAEPD 294

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
            +   L   K+ ++L +     ++            D++E KQ +  L +  +  +  ++
Sbjct: 295 AQINNLLEFKDGRILEVSSHPSQVGKKIVGRVWIFRDVTERKQVEKDLEYRIQFEQLITN 354

Query: 584 HKSDFLA 590
             + F++
Sbjct: 355 LSTHFIS 361



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 30/232 (12%), Positives = 61/232 (26%), Gaps = 10/232 (4%)

Query: 33  GFETEKSKK--ENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPI-PRTVRFTWNI 89
           GFE + S K         F+       N            +    +  I    V   +  
Sbjct: 497 GFEAQPSPKTRSPEILTLFKMVGEMLANALERKRAEEALRQAEIKYRSIFENAVEGIFQS 556

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQN-TWYGK 146
            A G     +  L    G    + +  +L D+   L++DPN        ++ QN     +
Sbjct: 557 TADGRYISANPALAHIYGYSNPEEMLAQLTDIGSQLYVDPNRRQEFLAAMETQNEILRFE 616

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
           + ++  +G+   + I   A  + +     S + G   V             +   +    
Sbjct: 617 SEVYRRDGSI--IWISENARAVRASGGAISCYEG--TVEDISDRKKAEVSCQLALEAAES 672

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
            +  K    +    +              +  +   L       D       
Sbjct: 673 ANRAKSTFLANMSHELRTPLNAIIGYSEMLAEEAEDLAVKDFIPDLDKIRTA 724



 Score = 48.5 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/150 (8%), Positives = 41/150 (27%), Gaps = 8/150 (5%)

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365
                     + E       +      F   + G    ANP+   +  Y + +++     
Sbjct: 527 ERKRAEEALRQAEIKYRSIFENAVEGIFQSTADGRYISANPALAHIYGYSNPEEM--LAQ 584

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
           L+ +     +  N   + +    +    +   +    +     + + ++           
Sbjct: 585 LTDIGSQLYVDPNRRQEFLAAMETQNEILRFESE---VYRRDGSIIWISENARAVRASGG 641

Query: 426 ENMPQNGIEPEDVDTRINKR--KMEIEVMQ 453
                 G   +  D +  +   ++ +E  +
Sbjct: 642 AISCYEGTVEDISDRKKAEVSCQLALEAAE 671


>gi|167629981|ref|YP_001680480.1| signal transduction histidine kinase [Heliobacterium modesticaldum
           Ice1]
 gi|167592721|gb|ABZ84469.1| signal transduction histidine kinase [Heliobacterium modesticaldum
           Ice1]
          Length = 703

 Score =  352 bits (903), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 104/393 (26%), Positives = 174/393 (44%), Gaps = 24/393 (6%)

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
            R+  +K E    +   + E  SD I+    E IIL  + A   L GY  E+IL +    
Sbjct: 156 QRVLVKKFEKSEERYRLLAEYASDLISRHTTENIILYASPASRSLLGYEPEEILGRSGYE 215

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF-----SSCY 554
           FL       +   L E ++    +  +       K+ + +     ++ +           
Sbjct: 216 FLHPKDMDRVGDNLREAIARLEPRLFQ--YRMRRKDGRYVWFESTVRPVQNMETGKVQEV 273

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+ + +L  AK+ AE     KS FLA VSHEIRTPL  IIG  +++ +  
Sbjct: 274 VFVTRDITERKRAEEELHMAKERAEAADRAKSAFLATVSHEIRTPLHGIIGMIDLLLDTA 333

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                      Y   I     L+  I+ND+LD SK+E+G++ L      L   V++ ++L
Sbjct: 334 L----TEEQASYGRTIGELSRLLSSIINDILDFSKMEAGRIELEVVDYELRAVVNDVVNL 389

Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
           +++ + +K + I       +P  +  D   ++Q+ +N+  NA+ FT  G ++ +     S
Sbjct: 390 LRVRSEQKNLDITCDIDREVPPFLRGDPIRLRQVLINLGGNAVKFTEKG-KVALRIAMDS 448

Query: 734 NEE-----------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
             E           +   + DTG+G+T+    +  +PF Q   S   R  GTGLGL ++K
Sbjct: 449 RAEQSDPVNEVARFLRFEICDTGIGITDEVAPRLFQPFSQADMSTARRYGGTGLGLAISK 508

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            +V+   G+    S P  GT      PL ++S 
Sbjct: 509 RLVELMGGEIGFRSIPGLGTTFWFTMPLLESSA 541



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 47/486 (9%), Positives = 120/486 (24%), Gaps = 42/486 (8%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPIE 153
           +   S      +G    +++G    +      +D   +++ + + R      +  +   +
Sbjct: 190 ILYASPASRSLLGYEPEEILGRSGYEFLHPKDMDRVGDNLREAIARLEPRLFQYRMRRKD 249

Query: 154 GTNLYVPIDLAALPIYS-RNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212
           G   YV  +    P+ +    +        +                  ++       K 
Sbjct: 250 GR--YVWFESTVRPVQNMETGKVQEV--VFVTRDITERKRAEEELHMAKERAEAADRAKS 305

Query: 213 GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ 272
              +    +         P H  +      L      +          L     S + + 
Sbjct: 306 AFLATVSHEIRT------PLHGIIGMIDLLLDTALTEEQASYGRTIGELSRLLSSIINDI 359

Query: 273 EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP 332
            DF  +   +   +     L+    +    L  R+         + +   P  +   PI 
Sbjct: 360 LDFSKMEAGRIELEVVDYELRAVVNDVVNLLRVRSEQKNLDITCDIDREVPPFLRGDPIR 419

Query: 333 ---FFVYSHGNLFYANPS---FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
                +   GN           L +      +  +    +       ++ D        +
Sbjct: 420 LRQVLINLGGNAVKFTEKGKVALRIAMDSRAEQSDPVNEV-ARFLRFEICDTGIGITDEV 478

Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN----MPQNGIEPEDVDTRI 442
                   +  A + T +      L +            E     +P  G         +
Sbjct: 479 APRLFQPFS-QADMSTARRYGGTGLGLAISKRLVELMGGEIGFRSIPGLGTTFWFTMPLL 537

Query: 443 N--KRKMEIEVMQLCSILEATSDGIAIINREGIILS-----TNRAVSKL----FGYPVED 491
               +  E    Q  + L    +       E  IL       N+ ++ +    FG P+  
Sbjct: 538 ESSAQAAEDSRAQEKADL-LLPEL-----PEKRILLVEDNPVNQKLASIQLKKFGLPLLA 591

Query: 492 I-LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
           +   +     + +   S++              T E   + + +   +  + +  + +  
Sbjct: 592 VSNGREAVEAVRREKYSLILMDCQMPEMDGFEATREIRRIEAEQGGHVPIVAMTARAMRG 651

Query: 551 SSCYSL 556
                L
Sbjct: 652 DREECL 657


>gi|189426162|ref|YP_001953339.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189422421|gb|ACD96819.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 898

 Score =  352 bits (903), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 101/384 (26%), Positives = 175/384 (45%), Gaps = 24/384 (6%)

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGI----AIINREG-----IILSTNRAVSKLFGYP 488
                 +R++     +   + E  + G      I + +G       ++ N A   L G  
Sbjct: 377 TSLVQRERELIESDKRYRLLFENMTSGFALNAMIYDEQGNPMDYRFITVNPAFEHLTGAK 436

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            +DI+ K     +       +  Y     +    + +           +  S        
Sbjct: 437 AKDIIGKTVREVMTGTEQHWIETYGRVARTG---EPIAYENYAQDI-GRYFS---TYAFC 489

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
           P    +++  +DI+E  + + +L+ AK  AE  +  KSDFLA +SHEIRTP+  ++G ++
Sbjct: 490 PEPGLFAVVFNDITERFKSQQELAEAKDAAEAANQAKSDFLANMSHEIRTPMNGVVGLTQ 549

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
           +++            +EY + I+ S + +L ++ND+LD+SKIESGK+ L F   SL +A+
Sbjct: 550 LLRFTELTT----EQVEYLDSIETSADNLLSLINDILDLSKIESGKVELEFTDFSLRKAI 605

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QII 726
            + I   +    EK + I+   A ++P  +  D   VKQ+ +N+L NAI FT  G   I 
Sbjct: 606 QDIIITQKSRIFEKGLQIKQEIAADLPELVNGDQLRVKQVFINLLGNAIKFTERGTITIA 665

Query: 727 ISTTHTSNEE--VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
           +S     +    + + V DTG+GM+   L+K   PF Q  +S   R  GTGLGL + + +
Sbjct: 666 VSILERESNRALIRITVSDTGIGMSQETLQKIFDPFAQADSSTTRRFGGTGLGLSICRKL 725

Query: 785 VDANMGKFYIFSTPAKGTLIEIIF 808
            +   G   + S P  G+   +  
Sbjct: 726 AELMGGAITVESIPGSGSSFHLDL 749


>gi|27377398|ref|NP_768927.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
           USDA 110]
 gi|27350542|dbj|BAC47552.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
           USDA 110]
          Length = 833

 Score =  352 bits (903), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 119/524 (22%), Positives = 203/524 (38%), Gaps = 19/524 (3%)

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLT 352
               E  + LS +          E +    + ++     F +Y     L   N  +  + 
Sbjct: 41  RAMVERSQELSSKELSEARDKATEAQRRLVDAIESISEGFSLYDADDKLVIYNRRYRDMH 100

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
              S++ +       T+L     S         +       +A           R +   
Sbjct: 101 GTASINVVNQGVSFETILRNATASGEIRDAEGRVEAWIEQRLAQHRDPKGTHVQRRSDGR 160

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS--DGIAIINR 470
              I   K +             +  D +  ++ ++    +L  I EA      I   + 
Sbjct: 161 WIQINERKTDDGGT----VATYTDITDVKKAEQAIQESEQRLRVIAEAAPMAVAIVTFD- 215

Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530
           +GII   NR  S++F       L            P     ++  +             L
Sbjct: 216 DGIIRYANRRFSEMFELEGSSALGLQAKTLYA--DPQHRERFIGALTEHG--HVEGMEML 271

Query: 531 GSTKEEKLLSLRIIIKKLPFSSCYSLT--MHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
                 +     I  +++ F    ++   + DIS+ K+ + +L  A   +E+ +  KSDF
Sbjct: 272 LKRVGGEEFWALIASQRVEFEGRPAMINGLADISDRKRMEGELHKAIWASEQATRAKSDF 331

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
           +A +SHE+RTPL AIIG+SE++              +    I  +G  +L +++++LD+S
Sbjct: 332 VANMSHELRTPLNAIIGYSEILFEDAQSAGRESEMAD-LRKIQDAGKHLLGLIDNILDLS 390

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIA 708
           KIE+GKM L+ E   L   +    + V   A +    +  + A+ I  I +DL  V+Q  
Sbjct: 391 KIEAGKMTLYLETFELRPMIDSVAATVTPLAKKTGNALVANCADEIGTIHSDLTKVRQTL 450

Query: 709 LNILSNAIHFTPSGGQIIISTTHTSN---EEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
            N+LSNA  FT   G I ++    +N   E +  +VRDTG+GMT  +  K  + F Q  +
Sbjct: 451 FNLLSNACKFT-RNGTITLTALRDTNAAGEWIEFQVRDTGIGMTPDQQAKVFEAFTQADD 509

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           S      GTGLGL + K+      G   + S   KGT   +  P
Sbjct: 510 STTRVYGGTGLGLAITKSFCRLMGGDVTLTSEAGKGTAFVVRLP 553



 Score = 42.3 bits (98), Expect = 0.38,   Method: Composition-based stats.
 Identities = 24/302 (7%), Positives = 71/302 (23%), Gaps = 17/302 (5%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           DA   L   +       G  +  ++   +   + + +   +  I D   R   W  +   
Sbjct: 84  DADDKLVIYNRRYRDMHGTASINVVNQGVSFETILRNATASGEIRDAEGRVEAWIEQRLA 143

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
              +    +V        I    R+                       +  +++   + E
Sbjct: 144 QHRDPKGTHVQRRSDGRWIQINERKTDDGGTVATYTDITDVKKAEQAIQESEQRLRVIAE 203

Query: 210 IKK---GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
                    + +       +++         +    L     + D   +      LT   
Sbjct: 204 AAPMAVAIVTFDDGIIRYANRRFSEMFELEGSSALGLQAKTLYADPQHRERFIGALTEHG 263

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
                +     +   ++       + +   +     ++     S     +   +      
Sbjct: 264 HVEGMEMLLKRVGGEEFWA--LIASQRVEFEGRPAMINGLADISDRKRMEGELHKA---- 317

Query: 327 DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
                   +++      A   F+    ++    +    G S +L     S     +   L
Sbjct: 318 --------IWASEQATRAKSDFVANMSHELRTPLNAIIGYSEILFEDAQSAGRESEMADL 369

Query: 387 YR 388
            +
Sbjct: 370 RK 371


>gi|110639166|ref|YP_679375.1| multi-sensor hybrid histidine kinase [Cytophaga hutchinsonii ATCC
           33406]
 gi|110281847|gb|ABG60033.1| multi-sensor hybrid histidine kinase [Cytophaga hutchinsonii ATCC
           33406]
          Length = 1222

 Score =  352 bits (903), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 142/778 (18%), Positives = 271/778 (34%), Gaps = 76/778 (9%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI-DPNNHIGDLLKRQNTWYGKTT 148
           D  G ++ ++      +     +++ +   D+     +     H+ ++L  +     +T 
Sbjct: 179 DLDGKIQFVNRAWKDILQYSDEEILKLNFRDIIAKEQVGVTMEHLNNILAGKKDDKFETV 238

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG----------- 197
                G N+ V   +    +     +   FRG  I H N                     
Sbjct: 239 FTSKNGRNIQVICSVN---VRYEKEKPVSFRG--IFHDNTEHMRAERAQNLYYKISTLAI 293

Query: 198 --KRLDKKFSHLHEIKKGHSSVEKE-----------------KYDIFSQQSPPPHLRMKN 238
              RLD    ++H+  +   +V                      +    +       +  
Sbjct: 294 NSDRLDSLLDNIHKELRTIIAVNNFHVALYDRDHNYLNFPYYVDENIGPKPISMKRIVGK 353

Query: 239 KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL------ 292
            ++  + +      + + +   L  +    L        + +    + +  G +      
Sbjct: 354 GLTEYSLFNEEPTFLYEEDINKLSEAGAIELLGPTPKIWLGVPLRLENRTIGVICVKSHS 413

Query: 293 ----------QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLF 342
                     +     S +               +         +      +  +     
Sbjct: 414 DRNKYKRRHVELLDFISGQIALVIERKRNEEQIIDKTARLNAIFESSSHLIWSVNRKRGL 473

Query: 343 ------YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA 396
                 YAN  F    KY ++ D  +   +  L D       +          +      
Sbjct: 474 TSFNQNYANAIFRKYQKYPTIYDEGVTKEVLVLSDPEFHDSIDKKYKDAF---NGQPQHF 530

Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
            A                                +GI  +  + +  +  ++    +  +
Sbjct: 531 EACNTN---QNGEIFWRETYLNPIFLPDGRIDEVSGISHDITEKKQWEITIQESEEKFRN 587

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           I E+  D     +  G I   + +  +L GY  E+I+ K  + F       V  + + E+
Sbjct: 588 IFESFQDIYYRTDLSGYITMISPSGCELSGYTQEEIIGKHISEFFTTPKQQV--NLIREV 645

Query: 517 LSLDLRQTLEKITLGSTKE--EKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA 574
           L     +  E        E  + + ++R+I               DI+  K+   +L HA
Sbjct: 646 LKTGRVKNYETNVNIKGGESIQSISNIRLIYNNEGKPIGVDGVARDITFLKKASQELYHA 705

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
           K+IAEK    K +FLA +SHEIRTP+  +IG  +++              +Y   I +S 
Sbjct: 706 KEIAEKSLKVKENFLANMSHEIRTPMNGVIGMIDLLNETPLM----EEQRKYVQTIKKSS 761

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
             +L+I+ND+LD+SKIE+GKM L   P+S+++ V +  +L    A  K I +  S  +N+
Sbjct: 762 ETLLNILNDILDLSKIEAGKMQLRLAPISIEQTVEKLHALFYQQATLKNIDLLYSIDSNV 821

Query: 695 PRI-LADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSN--EEVILRVRDTGVGMTN 750
           P++ LAD   + QI  N+ SNAI FT  G  +I IS     +   ++ + + DTG+G+  
Sbjct: 822 PKVVLADETRLLQILSNLTSNAIKFTDQGSVRIQISLQSKKDLVNKIRVNISDTGIGIAQ 881

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            +L      F Q+ NS      GTGLGL ++K +     G+  + +   KG++    F
Sbjct: 882 DKLNVLFGYFNQVDNSSSKSYGGTGLGLAISKELSKLMNGEIGVQTEANKGSVFWFTF 939



 Score =  112 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 48/311 (15%), Positives = 101/311 (32%), Gaps = 14/311 (4%)

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKS 356
              E +       +       E +  E  +K  +    +   G + YAN +FL +  ++ 
Sbjct: 13  SRDELIQQVKELQIINANQRPEKILQEAFEKINLLVITIDQDGLIVYANEAFLEVIGWEK 72

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
              +            P    N       L +          +  + + +      + F 
Sbjct: 73  QRLLGEN---WKEFLEPGKDKNKEEHIYTLIKKQGFIDQLKRKFLSKEGD---YRTIKFN 126

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476
                    +      I  +  D +   R ++    QL  + E  +D I + + +G I  
Sbjct: 127 VVIHHPIGNDVHLTTLIGEDITDKKKVIRALKDSNDQLQDLFENANDLIQVFDLDGKIQF 186

Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
            NRA   +  Y  E+IL+  F   + +    V   +L  IL+       +  T+ ++K  
Sbjct: 187 VNRAWKDILQYSDEEILKLNFRDIIAKEQVGVTMEHLNNILAGKK--DDKFETVFTSKNG 244

Query: 537 KLLSLRIII-KKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEKE--SSHKSDFLAR 591
           + + +   +  +        +    HD +E  + +   +   KI+     S      L  
Sbjct: 245 RNIQVICSVNVRYEKEKPVSFRGIFHDNTEHMRAERAQNLYYKISTLAINSDRLDSLLDN 304

Query: 592 VSHEIRTPLTA 602
           +  E+RT +  
Sbjct: 305 IHKELRTIIAV 315



 Score = 64.3 bits (155), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 70/611 (11%), Positives = 162/611 (26%), Gaps = 69/611 (11%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL-HIDPNNHIGDLLKRQ---NTWY 144
           ID  G +   +E   + IG    +++G    +  +     +   HI  L+K+Q   +   
Sbjct: 51  IDQDGLIVYANEAFLEVIGWEKQRLLGENWKEFLEPGKDKNKEEHIYTLIKKQGFIDQLK 110

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI------VHVNRVDNDPRALGK 198
            K      +   +   + +   PI +     +   G  I      +   +  ND      
Sbjct: 111 RKFLSKEGDYRTIKFNVVIH-HPIGNDVH-LTTLIGEDITDKKKVIRALKDSNDQLQDLF 168

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH--------- 249
                   + ++      V +   DI               + +  +             
Sbjct: 169 ENANDLIQVFDLDGKIQFVNRAWKDILQYSDEEILKLNFRDIIAKEQVGVTMEHLNNILA 228

Query: 250 -----KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE---SFE 301
                K + + T K         S+  + +       +         ++    +      
Sbjct: 229 GKKDDKFETVFTSKNGRNIQVICSVNVRYEKEKPVSFRGIFHDNTEHMRAERAQNLYYKI 288

Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFL------------ 349
                N   L +  D         +        +Y      Y N  +             
Sbjct: 289 STLAINSDRLDSLLDNIHKELRTIIAVNNFHVALYDRD-HNYLNFPYYVDENIGPKPISM 347

Query: 350 -LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
             +     + +  +     T L    ++  +    + L                ++    
Sbjct: 348 KRIVGKG-LTEYSLFNEEPTFLYEEDINKLSEAGAIELL----GPTPKIWLGVPLRLENR 402

Query: 409 NSLAMTFIPFEK-----ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
               +                      +G     ++ + N+ ++  +  +L +I E++S 
Sbjct: 403 TIGVICVKSHSDRNKYKRRHVELLDFISGQIALVIERKRNEEQIIDKTARLNAIFESSSH 462

Query: 464 GIAIINREGIILSTNRAVS-KLFG----YPVEDILR--KPFTVFLEQNTPSVMNHYLTEI 516
            I  +NR+  + S N+  +  +F     YP        K   V  +      ++    + 
Sbjct: 463 LIWSVNRKRGLTSFNQNYANAIFRKYQKYPTIYDEGVTKEVLVLSDPEFHDSIDKKYKDA 522

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHA 574
                 Q  E        E       +    LP       S   HDI+E KQ +  +  +
Sbjct: 523 F-NGQPQHFEACNTNQNGEIFWRETYLNPIFLPDGRIDEVSGISHDITEKKQWEITIQES 581

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
           ++          D         RT L+  I        +  G        ++ +    + 
Sbjct: 582 EEKFRNIFESFQDIYY------RTDLSGYITMISPSGCELSGYTQEEIIGKHISEFFTTP 635

Query: 635 NLVLDIVNDLL 645
              ++++ ++L
Sbjct: 636 KQQVNLIREVL 646



 Score = 51.2 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/139 (13%), Positives = 43/139 (30%), Gaps = 5/139 (3%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK 146
           +  D  GY+  IS    +  G    ++IG  + +          N I ++LK       +
Sbjct: 597 YRTDLSGYITMISPSGCELSGYTQEEIIGKHISEFFTTPK-QQVNLIREVLKTGRVKNYE 655

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
           T +    G ++    ++    IY+   +  G  G  +                  +    
Sbjct: 656 TNVNIKGGESIQSISNIRL--IYNNEGKPIGVDG--VARDITFLKKASQELYHAKEIAEK 711

Query: 207 LHEIKKGHSSVEKEKYDIF 225
             ++K+   +    +    
Sbjct: 712 SLKVKENFLANMSHEIRTP 730


>gi|117926521|ref|YP_867138.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117610277|gb|ABK45732.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1027

 Score =  352 bits (902), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 123/633 (19%), Positives = 240/633 (37%), Gaps = 35/633 (5%)

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
            +   L  IK    +                 +R   ++   T + A+ +      +   
Sbjct: 242 HRDRLLARIKMIGLAALLLAGSGVFWMGRVLFVRPLQRLKERTTHLANGEVRDLLNEVRR 301

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
                      + F  + L   + +       +      E+     H +      +   L
Sbjct: 302 RVMVRELQELTDQFDVMALQVSSARTSLEEKVHERTAQLEWELEERHKTEH-RLRQVLTL 360

Query: 322 TPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
               +D            G +   N     +  YK+V  +     L    ++ +L  ++ 
Sbjct: 361 QTAILDSANSSIISTDRTGIVQTFNKGAERMLGYKAVAVVGQ-YTLDMFYNSNELRQHSL 419

Query: 381 IKPVMLYRSDRTCIA----------ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
                L +     I              R   I     + + +        N     +  
Sbjct: 420 QLSATLDKRVDPGIESLFVLAREGKVDEREWMILHQDGHQVPVLMTVTPIYNSSGLLVGY 479

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI----AIINREGIILSTNRAVSKLFG 486
             +  E  + +    +++    +L   L++   G      + +     +  NR   ++FG
Sbjct: 480 LNMGTEISERKRLAAELKETNWRLQRALDSAQAGTFYYAVVHDH----MQWNRRALEMFG 535

Query: 487 YPVEDILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK-ITLGSTKEE--KLLSL 541
                     + +   +       ++    E+L+    +TL+   T+    +E  +++  
Sbjct: 536 LNDATFNGHLQDWLQRVVAVDRHRIDTLFAEVLATPNVETLDISYTILRQGDEAQRVIRT 595

Query: 542 RIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
           +  I + P       S    DI+E  Q +  L  A++ AE+ S  KSDFLA +SHEIRTP
Sbjct: 596 QGWIHRDPHGKATHLSGLFLDITEQMQAQQVLEEARQAAEEASQAKSDFLASMSHEIRTP 655

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           + A+IG S+V+         NP    Y   + R+ + +LD++N +LD+SKIESG+  L  
Sbjct: 656 MNAVIGLSDVLAETPL----NPEQQHYVTTLQRASHTLLDLINAILDLSKIESGRFELIE 711

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P  L +      S++++ A +K + +       +P  ++ D   ++QI +N++ NAI F
Sbjct: 712 RPFDLSDMAHGVCSVLRVQAEQKGLSLALEMDETLPPFVVGDSPRLRQILINLIGNAIKF 771

Query: 719 TPSGGQIIISTTHTSNEE-VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
           T  G  + +S      +  +   + D+GVG+   ++E+  + F Q+ +S   R  G+GLG
Sbjct: 772 TEQGF-VKVSVQARDQQRTLWFGIADSGVGIAPTQVEQIFEKFTQVDSSVVRRFAGSGLG 830

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           L ++K +V    G   + S   +G+L     PL
Sbjct: 831 LAISKQLVGLMGGHIGVESRLGEGSLFYFSLPL 863



 Score = 46.9 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 29/254 (11%), Positives = 71/254 (27%), Gaps = 28/254 (11%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIG--------------MRLCDVSDILHIDPNNHIG 134
            D  G ++  ++   + +G  A  ++G                   +S  L    +  I 
Sbjct: 375 TDRTGIVQTFNKGAERMLGYKAVAVVGQYTLDMFYNSNELRQHSLQLSATLDKRVDPGIE 434

Query: 135 DLL---KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN 191
            L    +       +  +   +G    VP+ +   PIY+ +    G+   G     R   
Sbjct: 435 SLFVLAREGKVDEREWMILHQDGHQ--VPVLMTVTPIYNSSGLLVGYLNMGTEISERKRL 492

Query: 192 DPR------ALGKRLDKKFSHLH--EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL 243
                     L + LD   +      +   H    +   ++F       +  +++ +  +
Sbjct: 493 AAELKETNWRLQRALDSAQAGTFYYAVVHDHMQWNRRALEMFGLNDATFNGHLQDWLQRV 552

Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303
                H+ D L  E      + E+           +  Q   +      ++   ++    
Sbjct: 553 VAVDRHRIDTLFAEVLA-TPNVETLDISYTILRQGDEAQRVIRTQGWIHRDPHGKATHLS 611

Query: 304 SHRNHPSLSAYFDE 317
                 +      +
Sbjct: 612 GLFLDITEQMQAQQ 625


>gi|159900574|ref|YP_001546821.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159893613|gb|ABX06693.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 885

 Score =  352 bits (902), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 123/714 (17%), Positives = 245/714 (34%), Gaps = 76/714 (10%)

Query: 104 KTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDL 163
           +T+G  A +M+ +   +++ +L  D        L     +        I G +  +    
Sbjct: 234 RTLG--ATEMLSIPWDEITVLLRDDRRIGDNAYLADSLPFRD------IAGEHYML---- 281

Query: 164 AALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYD 223
             +P+ +   E  G    G        +D     KRL +    L  +    ++V      
Sbjct: 282 --VPVRTATGEICGLLTVG--------DDDPKARKRLTETAPLLELLASQAAAVL----- 326

Query: 224 IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY 283
               ++      +  ++ + T       +     +    +  +             L   
Sbjct: 327 ----ENAALQNTLAQRIEATTAEMGRTAEDAMRARTRAESMYQIVRALSGTLEPQPLLDQ 382

Query: 284 TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY 343
                    Q                + S   D     T            +     L  
Sbjct: 383 ALLLIAQATQAERGGIMLIDHKNGRLAFSTNLDRNITRTE--------AISLERGQGL-- 432

Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403
                  + ++++   I      S  +              +    D         L   
Sbjct: 433 ----AGWVVEHRAPVIIPNTAEDSRWMVRTDYDKKGRSALAVPMEQDGRVAGV-IVLINS 487

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC---SILEA 460
           + N      + F+                        R   + +E    ++    +I+ +
Sbjct: 488 RINHFTQEHIQFVQVIGDQVMTMLSNVQLYRATTEQARRLSQALEQREEEVSRSLAIVRS 547

Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520
             DG+ + +R G I   N A  +L      + L KP                       +
Sbjct: 548 IGDGVVVGDRVGRIRLINPAAEQLLNIEAAEWLGKPLMSLPGAPESEPRL--------TE 599

Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
            +   +    G         +     +        +  HDI+               +E 
Sbjct: 600 KQTYQQFELSGRMIRASSTPVFTSQSEWL---GSVVVYHDIT--------------ASEL 642

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
               K++F+A  SHE+RTPLT+I G+ +++     GPL   +  ++ + +  +   +  I
Sbjct: 643 ADRMKTEFVATASHELRTPLTSISGYIDLLMLNTLGPLT-EQQRQFLSVVKNNIERLNAI 701

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILAD 700
           +NDLLD+S+IESGK+ L  +P++LDE +   +  +    + K+I +     +++P ++AD
Sbjct: 702 LNDLLDVSRIESGKVRLQRKPINLDELIQSTVMSIHQQWSGKQISLALDVPDDLPPMIAD 761

Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760
              ++QI  N++SNA  +T  GG+I +  +    + V L V+D+GVG+   + +     F
Sbjct: 762 PERMRQIVTNLISNAYKYTRDGGRIDVVVS-NGGDSVTLAVKDSGVGIAADDQKHIFTRF 820

Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
            +  N  + +  GTGLGL + K++V+ + GK +  S   +GT   +  P+   S
Sbjct: 821 FRSENPLKEQAGGTGLGLNITKSLVELHGGKIWFDSEEGRGTTFNVQLPVGGDS 874


>gi|117926684|ref|YP_867301.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117610440|gb|ABK45895.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 2654

 Score =  352 bits (902), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 119/751 (15%), Positives = 249/751 (33%), Gaps = 52/751 (6%)

Query: 98   ISEELPKTIGNYAFKM---IGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT--TLWPI 152
            +++   + +G    ++   +     +       +     G+  +       +        
Sbjct: 1324 VNQRWAEMLGYGLDEISPVLRQTWLETIHPEDRELVLARGNDYRAGVLDRYEVEYRARAK 1383

Query: 153  EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212
            +GT  ++ +   A+  +  + +    R  G V          A     +++   +     
Sbjct: 1384 DGTARWL-VSRGAIMEHQEDGQPR--RMVGTVQDITERKLMEAALSESEERSRLILTSVT 1440

Query: 213  GHSSVEKEKY--DIFSQQSPPPHLRMKNKVSSLTEYYA----HKDDVLKTEKY----PLL 262
                    +      +  +       +++++ +  +      H D      +        
Sbjct: 1441 DGIFGMDAQGCTTFVNPAAAAMLGYREDELTGMLMHDTVHHSHPDGSPYAHEQCPMRAAF 1500

Query: 263  TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL---SHRNHPSLSAYFDEGE 319
                  +   E     + + +  +     +Q   K     +         +      E E
Sbjct: 1501 AEGAVRVITDEVLWHKDGHAFPVEYTAVPMQKRGKRVGAVVVFRDITQRKADEKRLAESE 1560

Query: 320  NLTPETVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
                  +    +  + +         N  +  +  Y         G       A   +D+
Sbjct: 1561 QRLVLALQGANLGLWDWQAETGSLITNDIWSAMIGYTKEALDARYGNTFERWLALVHADD 1620

Query: 379  NAIKPVML-YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
                   L            A    +  + E    +      + ++        GI  + 
Sbjct: 1621 LPETQQRLEAHLRGETEEFRAEYRMLTESGEWKWILDIGRGVEWDEQGVAKRLVGIHQDI 1680

Query: 438  VDTRINKRKMEIEVMQLCSILEATSDGIA---IINREGIILSTNRA--VSKLFGYPVEDI 492
               + +  ++ +        L+ +  G     +   +G     N +   + +FG P    
Sbjct: 1681 DALKRSAEQLRLANFLSDQALDLSQAGYWHVPLTAEDG---YYNSSERAAAVFGDPPRPD 1737

Query: 493  LRKPFTVFLEQNTPS-------VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
             R         N  +             T  ++  + +           + K++ +  + 
Sbjct: 1738 WRYHVMDEWFANVEAGDKLASAATLANFTAAINGTVPRYDSIYAYKRPLDGKVVWIHAMG 1797

Query: 546  KKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
                              DI+  K   + +  AK+IA+  +  KSDFLA +SHEIRTP+ 
Sbjct: 1798 HVERDEQGKATDMYGITMDITASKLAADAIQQAKEIADAANQAKSDFLANMSHEIRTPMN 1857

Query: 602  AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
            AIIG S +          N R   Y   + RS   +L I+ND+LD SKIE+GK+ + F  
Sbjct: 1858 AIIGMSHLALQTDL----NGRQRNYITKVKRSAEALLGIINDILDFSKIEAGKLTMEFID 1913

Query: 662  VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTP 720
              L++ +    +LV L A EK + +  S    +   +  D   + Q+ +N+ +NA+ FT 
Sbjct: 1914 FRLEDVLDNLSNLVGLKAEEKGLELHFSLPPGLHTALKGDPLRLGQVLINLGNNAVKFT- 1972

Query: 721  SGGQIIIST----THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
            + G +++        T   ++   V+D+G+GMT  +     K F Q   S   +  GTGL
Sbjct: 1973 AHGDVVVKVQQLERTTERIKLYFSVKDSGIGMTPEQKGLLFKSFSQADASTTRKFGGTGL 2032

Query: 777  GLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
            GL ++K +V+   G+  + S P +G+     
Sbjct: 2033 GLAISKRLVEMMEGEIDVDSVPEQGSDFHFS 2063



 Score = 85.8 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 45/524 (8%), Positives = 128/524 (24%), Gaps = 68/524 (12%)

Query: 86   TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
             + +DA G    ++      +G    ++ GM + D     H D + +  +    +  +  
Sbjct: 1443 IFGMDAQGCTTFVNPAAAAMLGYREDELTGMLMHDTVHHSHPDGSPYAHEQCPMRAAFAE 1502

Query: 146  -------KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
                      LW  +G     P++  A+P+  R  +  G     +               
Sbjct: 1503 GAVRVITDEVLWHKDGHAF--PVEYTAVPMQKR-GKRVGA--VVVFRDITQRKADEKRLA 1557

Query: 199  RLD-KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT-----------EY 246
              + +    L     G    + E   + +       +    +                 +
Sbjct: 1558 ESEQRLVLALQGANLGLWDWQAETGSLITNDIWSAMIGYTKEALDARYGNTFERWLALVH 1617

Query: 247  YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ-NNSKESFEYLSH 305
                 +  +  +  L    E    E     T +            ++ +    +   +  
Sbjct: 1618 ADDLPETQQRLEAHLRGETEEFRAEY-RMLTESGEWKWILDIGRGVEWDEQGVAKRLVGI 1676

Query: 306  RNHPSLSAYFDEGENLT----PETVDKCPIPFF---VYSHGNLFYANPSFLLLTKYKSVD 358
                       E   L      + +D     ++   + +    + ++     +       
Sbjct: 1677 HQDIDALKRSAEQLRLANFLSDQALDLSQAGYWHVPLTAEDGYYNSSERAAAVFGDPPRP 1736

Query: 359  DIEIAGGLSTLLDAPKLSDNNAIKPVML---YRSDRTCIAASARLHTIQWNRENSLAMTF 415
            D      +       +  D  A    +       + T     +     +      + +  
Sbjct: 1737 DWR-YHVMDEWFANVEAGDKLASAATLANFTAAINGTVPRYDSIYAYKRPLDGKVVWIHA 1795

Query: 416  IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM------------------QLCSI 457
            +   + ++  +     GI  +   +++    ++                      ++ + 
Sbjct: 1796 MGHVERDEQGKATDMYGITMDITASKLAADAIQQAKEIADAANQAKSDFLANMSHEIRTP 1855

Query: 458  LEA---TSDGIAIINREGI----ILSTNRAVSKLFGYPVEDILRKPFT-----VFLEQNT 505
            + A    S      +  G     I    R+   L G   + +           +      
Sbjct: 1856 MNAIIGMSHLALQTDLNGRQRNYITKVKRSAEALLGIINDILDFSKIEAGKLTMEFIDFR 1915

Query: 506  PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
               +   L+ ++ L   +        S       +L+    +L 
Sbjct: 1916 LEDVLDNLSNLVGLKAEEK-GLELHFSLPPGLHTALKGDPLRLG 1958



 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 52/459 (11%), Positives = 113/459 (24%), Gaps = 68/459 (14%)

Query: 175  FSGFRGF--GIVHVNRVD---NDPRALGKRLDKKFSHLHEIKKGHSSV-EKEKYDIFSQQ 228
              G R F   +     +        A       +     E+      V    +   F+  
Sbjct: 851  VRGNRNFLQAMARDLEIRHYTQALVASDLADLSRNPAQQEMAAHFQRVILAREAQSFALL 910

Query: 229  SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288
                 +R       L + +A                     P  E    +          
Sbjct: 911  DATGTIRFSTNSHDLGKQHALASLRADALAKVFAGEGVFIAPLLEP---VEGEARPSLFM 967

Query: 289  FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD--KCPIPFFVYSHGNLFYANP 346
               ++N + ++   L+ R  P+             +T +         + S     Y   
Sbjct: 968  MEPVKNATGQTLAALAQRLDPTQEWTRIANVGRLNKTGETYLFNQAGILASESRFLYQLK 1027

Query: 347  SFLLLTKYKSVDDIEIAGGL--STLLDAPKLSDNNAIKPVML----YRSDRTCIAASAR- 399
              L L   +    + +  G     L             P+          ++        
Sbjct: 1028 Q-LKLVGEQENSILNLRLGDPGGDLFKGYTPHKTRDQYPLTRMAQAAIKGQSGQDIEGYR 1086

Query: 400  -------LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT------------ 440
                   L    W+ E  L M      +         +N +      T            
Sbjct: 1087 DYRGVPVLGVWLWDSELGLGMVSEVDVQDALTSYYANRNALLWVLAVTLLLSLALTVFSA 1146

Query: 441  ---RINKRKMEIEVMQLCSI------------------LEATSDGIAIINREGIILSTNR 479
                   R++     +L  +                  L + S+G+ ++++   IL  N 
Sbjct: 1147 LLGERANRQLLKSKDELEDMVQSRTMALNRASEGLNLALSSMSNGLIMLDQALTILIVNG 1206

Query: 480  AVSKLFGYPVEDI-LRKPFTVFLE-----QNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
                L   P   + + KP    +       +  +V    +       +RQ        +T
Sbjct: 1207 HYLSLLQLPETLVGVGKPIEPVVRYLVVRGDYGAVDEESMVRQQLQSMRQQQSGNIELNT 1266

Query: 534  KEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572
             + + + +         +     T+ D++E K+ + +L+
Sbjct: 1267 PDRRSIDVHQAPT---ETGGMVFTLTDVTERKRSEERLN 1302


>gi|149277501|ref|ZP_01883642.1| multi-sensor hybrid histidine kinase [Pedobacter sp. BAL39]
 gi|149231734|gb|EDM37112.1| multi-sensor hybrid histidine kinase [Pedobacter sp. BAL39]
          Length = 903

 Score =  352 bits (902), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 117/682 (17%), Positives = 250/682 (36%), Gaps = 60/682 (8%)

Query: 165 ALPIYSRNREFSG----------FRGFG-----------IVHVNRVDNDPRALGKRLDKK 203
             P+   +    G          + G             I+    +      L  R  + 
Sbjct: 99  GAPLVDEDGFVLGTVCVFDTEPRYMGIAQKEGLKILAKEIITHISLRKKAHELEVRNHRF 158

Query: 204 FSHL--HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA-----HKDDVLKT 256
              L   ++      +  ++  +    +   H+   N   ++ +           + +  
Sbjct: 159 EDLLNISKVSPEMHCILDDRGVLLFANNAIQHVLEYNPEEAVGQSAWGYCWKEDLERVSQ 218

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
                L+             T + N                ++  + ++    + +   +
Sbjct: 219 TISSGLSKGVKDFKIDFRVVTKSGNMRWLSWSM------VCKNRRWYAYGRDITENKRVE 272

Query: 317 EGENLTPETVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
                      K      +    N   + N +F  +T +  ++D++    L  L+  P+ 
Sbjct: 273 NELMKLSLVASKVNNGVVINDANNHVTWVNDAFEKITGFT-LEDLKGR-RLGDLITGPET 330

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
                 K   L +  ++    +  L   + +++    ++       N       +  I  
Sbjct: 331 KLELIDKARALTQKKQS---FTVDLLAYRKDKQPI-WLSIYNTVIFNDEGMVDIEVEIII 386

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILR 494
           +  + +  + ++     QL S++ + +D  + I + EG    TN ++ KL GY + ++  
Sbjct: 387 DITEKKKAEEEL-----QLLSLVASKTDTSVNITDGEGNTTWTNASLEKLTGYSLNELQG 441

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554
                 L +    +     + I + +            TK+   L + +    +   +  
Sbjct: 442 FKLGDVLSREEGHIELIEESRIRARNNES-YSIEVQARTKQGDPLWISVSTTPIVNENGR 500

Query: 555 SL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
                  + DI+  KQ + +L  AK+ A + S  K  FL+ +SHEIRTPL  +IG + ++
Sbjct: 501 VERQIDLITDITHRKQAEKELIEAKEHALQLSEAKEMFLSVMSHEIRTPLNTVIGVAHLL 560

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
            +    P      ++  N +  S   +L+I+ND+LD++K+E+G + L   P ++     +
Sbjct: 561 LDNDPLPG----QMDDLNMLKFSAENLLNIINDILDLTKMETGHLQLETIPFNIQSLTRD 616

Query: 671 AISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
            +S + +  + K  ++   F + IP+ I  D   + Q+ +N+L NAI FT  G  ++I  
Sbjct: 617 IVSSLHINVSSKGNILELDFDDRIPKFIKGDKIRLYQVLMNLLGNAIKFTDQGNILLIIR 676

Query: 730 THTSNEE---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
               N+E   +   V+D+G+G+   +L     PF Q          GTGLGL + + M+ 
Sbjct: 677 LLEENDEQVILYFEVKDSGIGIPKEKLSLIFDPFMQATTDTSRHYGGTGLGLTITQKMLQ 736

Query: 787 ANMGKFYIFSTPAKGTLIEIIF 808
               +  + S+   GT      
Sbjct: 737 LLGAEISVQSSVGVGTSFSFSI 758



 Score = 45.8 bits (107), Expect = 0.032,   Method: Composition-based stats.
 Identities = 21/139 (15%), Positives = 42/139 (30%), Gaps = 6/139 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN--TWYGK 146
            D  G     +  L K  G    ++ G +L DV               ++ +N  ++  +
Sbjct: 415 TDGEGNTTWTNASLEKLTGYSLNELQGFKLGDVLSREEGHIELIEESRIRARNNESYSIE 474

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                 +G  L++ +  +  PI + N      R   ++                 +    
Sbjct: 475 VQARTKQGDPLWISV--STTPIVNENGRVE--RQIDLITDITHRKQAEKELIEAKEHALQ 530

Query: 207 LHEIKKGHSSVEKEKYDIF 225
           L E K+   SV   +    
Sbjct: 531 LSEAKEMFLSVMSHEIRTP 549



 Score = 41.6 bits (96), Expect = 0.65,   Method: Composition-based stats.
 Identities = 20/246 (8%), Positives = 67/246 (27%), Gaps = 7/246 (2%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH--IDPNNHIGDLLKRQNTWYGKT 147
           DA+ ++  +++   K  G     + G RL D+       ++  +    L +++ ++    
Sbjct: 293 DANNHVTWVNDAFEKITGFTLEDLKGRRLGDLITGPETKLELIDKARALTQKKQSFTVDL 352

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
             +  +     + + +    I++            I+             + L    S  
Sbjct: 353 LAYRKD--KQPIWLSIYNTVIFNDEG--MVDIEVEIIIDITEKKKAEEELQLLSLVASKT 408

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK-TEKYPLLTSEE 266
                         +   S +    +   + +   L +  + ++  ++  E+  +     
Sbjct: 409 DTSVNITDGEGNTTWTNASLEKLTGYSLNELQGFKLGDVLSREEGHIELIEESRIRARNN 468

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
            S   +    T   +          + N +      +      +     ++      E  
Sbjct: 469 ESYSIEVQARTKQGDPLWISVSTTPIVNENGRVERQIDLITDITHRKQAEKELIEAKEHA 528

Query: 327 DKCPIP 332
            +    
Sbjct: 529 LQLSEA 534


>gi|32477914|ref|NP_870908.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
 gi|32448471|emb|CAD77986.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
          Length = 953

 Score =  352 bits (902), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 124/729 (17%), Positives = 254/729 (34%), Gaps = 59/729 (8%)

Query: 118 LCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAA--LPIYSRNREF 175
             +V  ++ +   +    LLKR  +    T +       L + + +      +  R R+F
Sbjct: 96  WSEVPILVLLQAGDPDSKLLKRVLSLEHVTLI----NRPLRIAVFINTVRAKLRDRMRQF 151

Query: 176 SGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS----PP 231
                   V    ++ D      R + +   +     G ++ E  K  ++  ++      
Sbjct: 152 E-------VRDLLLEKDRAQTSLRREARRLDMAIQAGGMAAWEWSKTHVYWSEAFRRLHG 204

Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291
               ++   S++       +       +     + +    +   +   L +         
Sbjct: 205 FGKNVQPSESAMFGSIVESEREQIANHWSDAIEQNAPFRSEFRINHPKLGERWLVAVGEP 264

Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC----PIPFFVYSHGNLFYANPS 347
           ++  S ++  Y   +   +     +     + ET  +     P   +V           +
Sbjct: 265 VKGKSGKTLRYTGLQWDITERKTAEMELRQSHETFQRLITDNPQGLYVVDADFRMRYVSA 324

Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS-ARLHTIQWN 406
                   +   I            P      AI+             A       +  N
Sbjct: 325 GARSVFVNAEPLIGKPFEDVMRTIWPNDFAEEAIRVFRHTLETGEPYVAPPLVEQRVDTN 384

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
              +   +       +              +   +++   +         I +A+   + 
Sbjct: 385 ETEAYDWSIERIVLPD---NRHGVVCHFYNNTQRQLSVDLLRESERYFREIADASPAMLW 441

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
           + +   +    ++      G   E+ +   +T     +  + +        +        
Sbjct: 442 VTDENHMCTFLSKNWYDTTGQTPEEGMGLGWTNATHPDDHARVGEEFLTAANARQAVLS- 500

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKES 582
                   +        + +    S    +     + D+ + K  +  L  AK IAE  +
Sbjct: 501 -EYRLRMADGTYRWAVDVGRPRFDSDGVFVGYTGYVIDVDDRKAFEQSLEQAKVIAENAN 559

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
             + +FLA +SHEIRTP+ AI+G ++++K+     L +P  I+    I R+GN +L+I+N
Sbjct: 560 RSRGEFLANMSHEIRTPMAAILGHADILKDH----LRDPDNIQVVETIRRNGNFLLNIIN 615

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADL 701
           D+LD+SKI+SGKM L  + V  D  ++E  SL+ + A+EK + ++  F   IP  I  D 
Sbjct: 616 DILDLSKIDSGKMQLETDRVRPDGLLAEVRSLMDVRASEKHLPLKIEFDGPIPDLIETDA 675

Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----------------------EVIL 739
             ++QI LN++ NAI FT SG ++ I   +                           +I 
Sbjct: 676 VRLRQILLNLVGNAIKFTDSG-EVKILVGYDGPGKRAAEIDQSDPSKLQSPVAGTCRLIF 734

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
           ++ DTG+G+   +     +PF Q  ++      GTGLGL + + +  A  G   + ST  
Sbjct: 735 QIVDTGIGIKPEDQASLFEPFVQADSTSTRSFGGTGLGLAICRRLAHALGGDVSVESTYG 794

Query: 800 KGTLIEIIF 808
           KG+   +  
Sbjct: 795 KGSKFTLTI 803



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/254 (11%), Positives = 71/254 (27%), Gaps = 31/254 (12%)

Query: 1   MSTDSIISNP-EDILTSNCKGNTQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQ-- 57
           ++ + +I  P ED++ +    +  + + +   +  ET +     P  +    +N T+   
Sbjct: 331 VNAEPLIGKPFEDVMRTIWPNDFAEEAIRVFRHTLETGEPYVAPPLVEQRVDTNETEAYD 390

Query: 58  ----------------------NQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYL 95
                                  Q  +S     +SE  F            W  D +   
Sbjct: 391 WSIERIVLPDNRHGVVCHFYNNTQRQLSVDLLRESERYFREIADASPA-MLWVTDENHMC 449

Query: 96  KEISEELPKTIGNYAFKMIGMRLCDVSDILH-IDPNNHIGDLLKRQNTWYGKTTLWPIEG 154
             +S+    T G    + +G+   + +                  +     +  L   +G
Sbjct: 450 TFLSKNWYDTTGQTPEEGMGLGWTNATHPDDHARVGEEFLTAANARQAVLSEYRLRMADG 509

Query: 155 TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214
           T     +D+   P +  +  F G+ G+ I              ++      + +  +   
Sbjct: 510 T-YRWAVDV-GRPRFDSDGVFVGYTGYVI--DVDDRKAFEQSLEQAKVIAENANRSRGEF 565

Query: 215 SSVEKEKYDIFSQQ 228
            +    +       
Sbjct: 566 LANMSHEIRTPMAA 579


>gi|283851414|ref|ZP_06368695.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283573152|gb|EFC21131.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 699

 Score =  352 bits (902), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 100/553 (18%), Positives = 217/553 (39%), Gaps = 33/553 (5%)

Query: 275 FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF 334
           + ++   +  K  +   L+          +              + L    ++  P    
Sbjct: 2   WKSLKAAEKIKSGFIDALRQRLAGLRRSDAPEKGAPALVAAPISQGLVSSILEYLPEGML 61

Query: 335 VYSHG--NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI---KPVMLYRS 389
           V       L   +     L    +   +E      +L       D  A    + + L R+
Sbjct: 62  VVEGEGLALRMVSRYAKELLGLSAEGLLERTYRDVSLHVPMYRQDAAAPAPFEALPLVRA 121

Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449
            R+    +     +  +    + +        +             + VDT++ ++K++ 
Sbjct: 122 VRSGELVTEEQWIVTRSDGYKIPVLCNAGPILDDSGRITGGILAFVDMVDTKLVEKKLQE 181

Query: 450 EVMQLCSILEATSDGIAIINREGIILS-TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
              +   +  ++   + +++ +  I+   N + +++ GY  E++  +   V    + P  
Sbjct: 182 SEEKFKKVFTSSPGILLLMDLDKKIILDVNNSFTEILGYGREEVRGQNVGVLGLIDAPGS 241

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568
                T + +       E +        +++     + ++           D+++  +  
Sbjct: 242 GAGLETLLETEGRFSDQELVVRTREGASRIILASADVVQVAGQRYLIAGGQDVTDLHEA- 300

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
                 ++ AE+ +  KS+FLA +SHEIRTPL  I+G + +          + +  EY  
Sbjct: 301 ------REDAERANRAKSEFLANMSHEIRTPLNGILGMTSLALMTC----TDHKGREYLG 350

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
              +SG  +L I+ND+LDISKIES +  L     +  E +      +++ A+ K +    
Sbjct: 351 LAQQSGQHLLGIINDILDISKIESQRFELEKAEFNPRETLENLFQTMRVEADAKGVRFDA 410

Query: 689 SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSN----------EE 736
           + A ++P  ++ D   ++QI +N++ N+I FT +G  ++ ++   T              
Sbjct: 411 TVAPDVPDCVIGDEGRLRQIYVNLIGNSIKFTTAGEVEVRVAVAATDGRREPAAMGGKGR 470

Query: 737 VIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
           + L   +RDTG+G+    L++    F Q+  S   R  GTGLGL ++K +V+   G+ ++
Sbjct: 471 ICLISSIRDTGIGIPQKNLKRIFDTFAQV--SVGARYGGTGLGLSISKRLVELMGGRIWV 528

Query: 795 FSTPAKGTLIEII 807
            S P +G+     
Sbjct: 529 ESEPGRGSTFHFT 541



 Score = 38.9 bits (89), Expect = 3.6,   Method: Composition-based stats.
 Identities = 16/220 (7%), Positives = 57/220 (25%), Gaps = 6/220 (2%)

Query: 89  IDAHGYLKE-ISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
           +D    +   ++    + +G    ++ G  +  +  I        +  LL+ +  +  + 
Sbjct: 200 MDLDKKIILDVNNSFTEILGYGREEVRGQNVGVLGLIDAPGSGAGLETLLETEGRFSDQE 259

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR----LDKK 203
            +         + I  +A  +    + +    G  +  ++    D     +     L   
Sbjct: 260 LVVRTREGASRI-ILASADVVQVAGQRYLIAGGQDVTDLHEAREDAERANRAKSEFLANM 318

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
              +     G   +        +      +L +  +         +    +   +     
Sbjct: 319 SHEIRTPLNGILGMTSLALMTCTDHKGREYLGLAQQSGQHLLGIINDILDISKIESQRFE 378

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303
            E++    +E    +      +    G   + +       
Sbjct: 379 LEKAEFNPRETLENLFQTMRVEADAKGVRFDATVAPDVPD 418


>gi|300867853|ref|ZP_07112495.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300334184|emb|CBN57671.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 1145

 Score =  352 bits (902), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 145/759 (19%), Positives = 271/759 (35%), Gaps = 120/759 (15%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147
            +D +G   +I+             ++   + +V      D    +I + L  Q T     
Sbjct: 463  LDRNGRYLKIAPTNQALTYKPMEDLVDKTIGEVFPPALADTFVGYIQNSLDSQQTVN--- 519

Query: 148  TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
              + +   +  V    +  P+   +          ++ V R  +D +       +    L
Sbjct: 520  VEYNLTIGDREVWFAASISPLSQES----------VIWVARDISDRKLAESARQQTEKQL 569

Query: 208  HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
                     + + K                                L      +  +   
Sbjct: 570  LRQNSALVELARNKALY--------------------------RGDLNAAIKEITETTAC 603

Query: 268  SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
            +L  +     +     ++ + F   + +S             + + +    E+      D
Sbjct: 604  TLELELASVWLYNESRSQMECFDRFERSSGLHKSGEPLVAADNPAYFQALEEDRIIAPGD 663

Query: 328  KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
                    +S         S+  +T   S            +LDAP       +  + L 
Sbjct: 664  -------PFSDRRTKDFANSYFAITGTAS------------MLDAPIRVGGVVMGVLCLE 704

Query: 388  RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
              ++T                             N          +  E  D    +  +
Sbjct: 705  EVEQTRYWTQEE---------------------QNFAASIADLVSLAIEASDRLRTETAL 743

Query: 448  EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT-P 506
                 +  SI E T++G+   + EG  LS N A+++++GY   + LR+  +    Q    
Sbjct: 744  RSAEEKYRSIFENTAEGLFQTSLEGHFLSANPALARIYGYSSPEELRELVSDIKSQVYVD 803

Query: 507  SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDIS 562
                  LT ++           +     +  ++ +   ++ +         Y  ++ DIS
Sbjct: 804  PHRRDELTRLIIQRGA-VSGFESQVYRADGSIIWISENVRSVLDRDGNVLYYEGSIEDIS 862

Query: 563  EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
            + K  ++ L  AK+ AE  S  KS FLA +SHE+RTPL AIIG+SE+++ +    LG   
Sbjct: 863  DRKHFESVLQLAKEAAEAASMAKSSFLANMSHELRTPLNAIIGYSEMLQEETED-LGYQE 921

Query: 623  YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                 + I  SG  +L ++ND+LDISKIE+G+M+L+ E  S+D+ + +  +  +  A + 
Sbjct: 922  LTPDLHKIHISGKHLLSLINDILDISKIEAGRMDLYLETFSVDDLIDDVAATAKPLAEKN 981

Query: 683  RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT----SNEE-- 736
              ++     ++I  + AD+  V+QI LN+LSNA  FT +G +I ++ +        EE  
Sbjct: 982  GNILEVIKNSDIDTMHADITKVRQILLNLLSNAAKFTHNG-KITLAVSREIAAIDAEESM 1040

Query: 737  --------------------------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
                                      +I    DTG+GMT+ +L++  +PF Q   S   +
Sbjct: 1041 TTAEVIIDNQSNINNNNSSAISNFECLIFNCTDTGIGMTSEQLQQIFQPFTQGDASTTRK 1100

Query: 771  GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
              GTGLGL ++        GK  + S    G+   +  P
Sbjct: 1101 YGGTGLGLAISHCFCQMMGGKIAVESQIGIGSTFSVKLP 1139



 Score = 81.2 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 33/236 (13%), Positives = 70/236 (29%), Gaps = 9/236 (3%)

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
           V  + +A  LS        +    +       +         +   +    E  +     
Sbjct: 355 VAALAVAIVLSIYTSRWITNPIRRLSAATKAMAQGEL----NQKVEVPIAEELGILAESF 410

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINK-RKMEIEVMQLCSILEATSDGIAIINREGIIL 475
                              +     I +  K++    +L ++    S+ I +++R G  L
Sbjct: 411 NLMAKQLRSSFAAMEATNVDLEQRVIERTAKLQSAEAELRALFAGMSELILVLDRNGRYL 470

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
                   L   P+ED++ K                Y+    SLD +QT+      +  +
Sbjct: 471 KIAPTNQALTYKPMEDLVDKTIGEVFPPALADTFVGYIQN--SLDSQQTVNVEYNLTIGD 528

Query: 536 EKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
            + +     I  L   S       DIS+ K  ++     +K   +++S   +    
Sbjct: 529 -REVWFAASISPLSQES-VIWVARDISDRKLAESARQQTEKQLLRQNSALVELARN 582



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 22/217 (10%), Positives = 63/217 (29%), Gaps = 17/217 (7%)

Query: 48  SFEQSNFTDQNQESVSNTNYLDS----ENTFVFDPIPRTVRF------TWNIDAHGYLKE 97
           + E+ NF     + VS           E             F       +     G+   
Sbjct: 713 TQEEQNFAASIADLVSLAIEASDRLRTETALRSAEEKYRSIFENTAEGLFQTSLEGHFLS 772

Query: 98  ISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTWYG-KTTLWPIEG 154
            +  L +  G  + + +   + D+   +++DP+  + +  L+ ++    G ++ ++  +G
Sbjct: 773 ANPALARIYGYSSPEELRELVSDIKSQVYVDPHRRDELTRLIIQRGAVSGFESQVYRADG 832

Query: 155 TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214
           +   + I      +  R+     + G   +          ++ +   +        K   
Sbjct: 833 SI--IWISENVRSVLDRDGNVLYYEG--SIEDISDRKHFESVLQLAKEAAEAASMAKSSF 888

Query: 215 SSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD 251
            +    +              ++ +   L       D
Sbjct: 889 LANMSHELRTPLNAIIGYSEMLQEETEDLGYQELTPD 925


>gi|167574056|ref|ZP_02366930.1| sensory box histidine kinase/response regulator [Burkholderia
           oklahomensis C6786]
          Length = 764

 Score =  352 bits (902), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 110/626 (17%), Positives = 203/626 (32%), Gaps = 31/626 (4%)

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
             ++  +   I          +  +    S    L       +   +       +     
Sbjct: 5   ARRRAKNYAVIAGFVVIATLLQAALVHFGSADMPLTPYFPFIAAAAWATSLGGGIGATLA 64

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH--PSLSAYFDE 317
             +      L +   +      +  +   F  +          L         L      
Sbjct: 65  SAVLIWVMFLSDTVAYPGPLSARIVQLATFVIVNGAICAIVAALKRSRRMNEVLRRREAL 124

Query: 318 GENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
                   +        V    G L Y NP+   L        +                
Sbjct: 125 ARRYYEALLQSLTQGVIVSDRRGMLTYMNPAAAALIGC-DATAVRGLPFRDVFNAYDSRG 183

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           +      +                H +       + +  +     +   +      I  +
Sbjct: 184 ERARSTALEQVLRSGASATVE--RHWLASRDGPRVPIAEVASPLVDSAGDMNGAVLIVRD 241

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
               R            L  ++EA+ D I  +  +  I S N A  ++FGY  +    + 
Sbjct: 242 ISGERERAAA----NRMLRRLVEASPDAIVGVGADRRITSWNPAARRMFGYDEQAARGRD 297

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556
             + +         H L   LS           L + ++   L   +    +       +
Sbjct: 298 VAMLIAPRWRR--RHPLPASLSDVYEPIENVDVLCARQDGSRLRATLSASPVFDDRDACV 355

Query: 557 ----TMHDISEWKQEKNKLSHA-------KKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
               T+ D  E ++ + +  H+       ++ A+  +  K + LA VSHE+RTPL  I G
Sbjct: 356 ALSLTLRDTGEQRRRERRTHHSLRGARDARRQADTSNRLKDELLATVSHELRTPLNVIYG 415

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
           + EV++N   G L      +  + IDRS   +  +V D+LD S + +GK+ L   PV L 
Sbjct: 416 WIEVLRNPAGGAL----QQQAIDAIDRSARSLSRMVGDILDASSLATGKLRLDAMPVDLV 471

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725
             V++    +   A  + + +    A     +  D   ++Q+  N+LSNA  FTP GG++
Sbjct: 472 RIVNDVTGALGTAAQAEGLDLTVDCALETCIVSGDGERLRQVLSNLLSNAFKFTPRGGRV 531

Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
            +S    ++    L V DTG G++   L    + F +   S      G GLGL + + + 
Sbjct: 532 TVSL-MRTDSHATLVVADTGQGISPEFLPHVFEAFRRADGSPASSRRGLGLGLSIVRHIA 590

Query: 786 DANMGKFYIFSTPAK--GTLIEIIFP 809
           + + GK  + S   K  GT   +  P
Sbjct: 591 ELHGGKVEVASA-GKRLGTTFTVTLP 615



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/232 (11%), Positives = 55/232 (23%), Gaps = 5/232 (2%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK---RQNTWYGK 146
           D  G L  ++      IG  A  + G+   DV +             L+   R       
Sbjct: 144 DRRGMLTYMNPAAAALIGCDATAVRGLPFRDVFNAYDSRGERARSTALEQVLRSGASATV 203

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
              W        VPI   A P+     + +G     IV     + +  A  + L +    
Sbjct: 204 ERHWLASRDGPRVPIAEVASPLVDSAGDMNGA--VLIVRDISGERERAAANRMLRRLVEA 261

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
             +   G  +  +      + +    +     +   +    A +          L    E
Sbjct: 262 SPDAIVGVGADRRITSWNPAARRMFGYDEQAARGRDVAMLIAPRWRRRHPLPASLSDVYE 321

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
                       + ++         + ++                    +  
Sbjct: 322 PIENVDVLCARQDGSRLRATLSASPVFDDRDACVALSLTLRDTGEQRRRERR 373



 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/208 (9%), Positives = 55/208 (26%), Gaps = 22/208 (10%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           + A   +   +    +  G       G  +  +        +     L            
Sbjct: 269 VGADRRITSWNPAARRMFGYDEQAARGRDVAMLIAPRWRRRHPLPASLSDVYEPIENVDV 328

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                     +   L+A P++                     +   AL   L        
Sbjct: 329 -LCARQDGSRLRATLSASPVFDD------------------RDACVALSLTLRDTGEQRR 369

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
             ++ H S+   +    +++      R+K+++ +   +       +      +L +    
Sbjct: 370 RERRTHHSLRGARD---ARRQADTSNRLKDELLATVSHELRTPLNVIYGWIEVLRNPAGG 426

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNS 296
             +Q+    I+ +  +  +  G + + S
Sbjct: 427 ALQQQAIDAIDRSARSLSRMVGDILDAS 454


>gi|332800511|ref|YP_004462010.1| multi-sensor signal transduction histidine kinase
           [Tepidanaerobacter sp. Re1]
 gi|332698246|gb|AEE92703.1| multi-sensor signal transduction histidine kinase
           [Tepidanaerobacter sp. Re1]
          Length = 590

 Score =  352 bits (902), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 87/373 (23%), Positives = 170/373 (45%), Gaps = 25/373 (6%)

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
               +    ++  E  ++ +IL   +DG+  +N EG ++  N    ++       I  + 
Sbjct: 233 TTRLKETMEEISDEKEKMEAILINMADGVIALNDEGQVIHINPVARQMLSLEEG-INGQN 291

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556
           F++ L +     M   L               TL  TK+  L S+   +++      +  
Sbjct: 292 FSLELNKLLNIDMKQLLNN-------DFDNSETLIKTKDAILKSIYAPLRRENRIVGHIF 344

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
              DI++  + +              + + +F+A VSHE+RTPLT I  ++E + +    
Sbjct: 345 VFQDITKQHRLE--------------AMRKEFVANVSHELRTPLTTIKSYAETLLDGALE 390

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
                   ++ + I+   + +  +V+DLL++S++++ +     +P+ +   +   I+ + 
Sbjct: 391 EA--EISRQFTSVINDEADRMTRLVSDLLELSRLDNKETKWDMKPIDIGTILKNVITKMD 448

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
           +    K   I+ +    +P + AD   V+Q+  NILSNA  +TP GG+I I   +     
Sbjct: 449 VNIKRKGQTIKANIPEELPEVFADNDKVEQVFQNILSNAYKYTPEGGKIYIDVEYAEK-M 507

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           V +  +DTGVG+   +L +  + F ++  ++     GTGLGL +A+ +V A+ G+  I S
Sbjct: 508 VKVTFKDTGVGIPKEDLPRIFERFYRVDKTRSREMGGTGLGLSIAREIVQAHGGEISISS 567

Query: 797 TPAKGTLIEIIFP 809
              KGT + I  P
Sbjct: 568 ELGKGTSVIIQIP 580


>gi|298247995|ref|ZP_06971800.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297550654|gb|EFH84520.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 853

 Score =  352 bits (902), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 112/737 (15%), Positives = 244/737 (33%), Gaps = 48/737 (6%)

Query: 91  AHGYLKEISE-ELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKR---QNTWYG 145
             G + EI+E  L +       ++IG  L +             +   + R     T   
Sbjct: 151 PEGIVLEINEVPLAEAR-VRREEVIGYPLAETRWWSCSPTSQEQLCAAIARASRGETVRF 209

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +  +   EG + ++ + +   P    +   +     GI           A    L     
Sbjct: 210 EAVVHLREGLDRHLEVVI--TPHRDADHHIAYLIIAGI--DITERKRAEAELHAL---ID 262

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM-KNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
            + ++                 +               +   +      +++     + +
Sbjct: 263 AIPQLVWITRPDGSHDSFNQRWRDYTGLSTAEAQGEGWMQCLHPEDRSRVRSAWQHAVQT 322

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
                 E                     +  + +  ++             ++    + E
Sbjct: 323 GGGYETELRLRQGTTGEYRWFLARAMPARGETGQILKWFGTSTDIEEQKRVEQQLKESQE 382

Query: 325 ----TVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
                 +  P   +V     L  Y N  +   T       +E       +       D+ 
Sbjct: 383 SLRVLAETVPQQVWVRRPDGLYEYTNQRWRDYTGLT----LEHIQNDRRVHLQFIHPDDQ 438

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
               V +  +  T           Q                 ++  + +   G   +  +
Sbjct: 439 DGHLVHMQHALDTGAMFEYEQRLKQCQTGEYRWFLSRAMPMRDEAGQILKWFGTNTDIEE 498

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL--RKPF 497
            +  +  +     ++  ++ ++  GI     +  ++  N    ++ GY  ED+   R  +
Sbjct: 499 QKRTEEALRQSQERVNVLMNSSIIGIF-FAEDEQVVEANETYLRMTGYSREDLCEGRMNW 557

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-CYSL 556
                    +       E+ +       EK  +   K+   L + +    L         
Sbjct: 558 LHMTPPEYLARTLEAQQELATQQSLTPYEKEYVC--KDGSCLPVLVGGVILEHHPLQAIG 615

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            + D S  K+ + +              K DF++  SHE+R PLTA+   +  + +++  
Sbjct: 616 FVLDNSARKELEQR--------------KDDFISMASHELRNPLTALKLHT-TLLHRQLA 660

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
             G        + ++   N V  +V +LLD+SKI++G++   +E V LD  + E    VQ
Sbjct: 661 KQGLQGSAPALSSMETQINKVTRLVEELLDVSKIQAGRLEYVWETVDLDALLREITDTVQ 720

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
                 RIL+R +   ++   +AD   + Q+  N+LSNA+ ++PS   + +  + ++   
Sbjct: 721 QTHPSHRILVRGAVQTSL---MADRDRLGQVFTNLLSNAVKYSPSAEAVEMDLSTSAE-T 776

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           V +RV+D G+G+   + +K    F ++ + +Q    G G+GL +   +V    G   + S
Sbjct: 777 VTIRVQDHGLGIPREKRDKIFDRFYRVADPRQKAIPGLGMGLYIVAEIVKHYGGTITVES 836

Query: 797 TPAKGTLIEIIFPLYDT 813
            P KG+  +++ P   T
Sbjct: 837 EPGKGSTFQVMLPRKRT 853



 Score =  124 bits (312), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 46/536 (8%), Positives = 125/536 (23%), Gaps = 41/536 (7%)

Query: 56  DQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIG 115
            +  + ++  +           P      F   +D    +   +       G     ++G
Sbjct: 4   TKPTKRLTPASSETLLTLLETLPGAL---FV--VDDAAKIVYANASAQTITGATREDVLG 58

Query: 116 MRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREF 175
             L   +  L            ++         + P+        + +   P        
Sbjct: 59  KPLWRGAPQLVSTALYQAVQQTRQTQAPSEVEYVSPVT----RTWLHVQLSP------TV 108

Query: 176 SGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS--PPPH 233
            G      VH  R      A   + ++              V   +  +           
Sbjct: 109 GGLM--VQVHQGRAAARREAPVPQDERLSIEDLNGLFSRIGVLTPEGIVLEINEVPLAEA 166

Query: 234 LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS-----LPEQEDFHTINLNQYTKKQY 288
              + +V               T +  L  +   +     +  +   H         +  
Sbjct: 167 RVRREEVIGYPLAETRWWSCSPTSQEQLCAAIARASRGETVRFEAVVHLREGLDRHLEVV 226

Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPS 347
               ++        +      +     +         +D  P   ++    G+    N  
Sbjct: 227 ITPHRDADHHIAYLIIAGIDITERKRAEAE---LHALIDAIPQLVWITRPDGSHDSFNQR 283

Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
           +   T   + +  +  G +  L        +                    RL       
Sbjct: 284 WRDYTGLSTAEA-QGEGWMQCLHPED---RSRVRSAWQHAVQTGGGYETELRLRQGTT-- 337

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
                          +  + +   G   +  + +  +++++     L  + E     + +
Sbjct: 338 GEYRWFLARAMPARGETGQILKWFGTSTDIEEQKRVEQQLKESQESLRVLAETVPQQVWV 397

Query: 468 INREGIILSTNRAVSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
              +G+   TN+      G  +E I    +    F+  +       ++   L        
Sbjct: 398 RRPDGLYEYTNQRWRDYTGLTLEHIQNDRRVHLQFIHPDDQDGHLVHMQHALDTGAMFEY 457

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKI 577
           E+      +  +          +   +     +  T  DI E K+ +  L  +++ 
Sbjct: 458 EQRL-KQCQTGEYRWFLSRAMPMRDEAGQILKWFGTNTDIEEQKRTEEALRQSQER 512



 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 35/382 (9%), Positives = 81/382 (21%), Gaps = 27/382 (7%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQNTW 143
             W     G     ++      G    +  G                      ++    +
Sbjct: 267 LVWITRPDGSHDSFNQRWRDYTGLSTAEAQGEGWMQCLHPEDRSRVRSAWQHAVQTGGGY 326

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +        T  Y      A+P      +    + FG               K   + 
Sbjct: 327 ETE-LRLRQGTTGEYRWFLARAMPARGETGQI--LKWFGTSTDIEEQKRVEQQLKESQES 383

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR-------MKNKVSSLTEYYAHKDDVLKT 256
              L E       V +                         ++   L   +    D    
Sbjct: 384 LRVLAETVPQQVWVRRPDGLYEYTNQRWRDYTGLTLEHIQNDRRVHLQFIHPDDQDGHLV 443

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
                L +      EQ                   +++ + +  ++             +
Sbjct: 444 HMQHALDTGAMFEYEQRLKQCQTGEYRWFLSRAMPMRDEAGQILKWFGTNTDIEEQKRTE 503

Query: 317 EGENLTPETVDKCP----IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
           E    + E V+       I  F      +  AN ++L +T Y   D  E    ++ L   
Sbjct: 504 EALRQSQERVNVLMNSSIIGIFFAEDEQVVEANETYLRMTGYSREDLCEGR--MNWLHMT 561

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
           P       ++      + ++                + L +        +   + +    
Sbjct: 562 PPEYLARTLEAQQELATQQSLTPYEKE---YVCKDGSCLPVLVGGVILEHHPLQAIGFVL 618

Query: 433 IEPEDVDTRINKRKMEIEVMQL 454
                      ++++E      
Sbjct: 619 DNS-------ARKELEQRKDDF 633



 Score = 41.9 bits (97), Expect = 0.48,   Method: Composition-based stats.
 Identities = 12/119 (10%), Positives = 41/119 (34%), Gaps = 7/119 (5%)

Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
              + +++    I+  N +   + G   ED+L KP      Q   + +   + +      
Sbjct: 26  PGALFVVDDAAKIVYANASAQTITGATREDVLGKPLWRGAPQLVSTALYQAVQQTRQTQA 85

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
              +E ++  +      L +++            + +H      + +  +   ++++ +
Sbjct: 86  PSEVEYVSPVTR---TWLHVQLSPT----VGGLMVQVHQGRAAARREAPVPQDERLSIE 137


>gi|162450927|ref|YP_001613294.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
 gi|161161509|emb|CAN92814.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
          Length = 885

 Score =  352 bits (902), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 114/647 (17%), Positives = 225/647 (34%), Gaps = 34/647 (5%)

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247
               +     + L   +                  D+      P  L +   +  ++   
Sbjct: 95  DSLLEAEMAARALAPGYEAQVFTDAAAMLERVAGGDV------PDVLVLDQVMPGMSGTE 148

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
                  +     L     +   ++ED                            L    
Sbjct: 149 ICGLLRSRAATVGLPILILTVAGQEEDLVEGLTAGADDYVVKPCPAAALSARVGALLRSK 208

Query: 308 HPSLSAYFDEG-----ENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIE 361
                A   E       +L    +++           G L   N            D  +
Sbjct: 209 RLRERAERAERIAAVERDLLRALIEQSGDGIMAADACGALRICNGEAQRQHGVYERDARD 268

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
               L                   L+R+ R     +AR   +     +  A++       
Sbjct: 269 ALESLRNRGLLALDGRPLRPDEDPLHRALRGEKVENAR-WLVTRPDGSIRALSGTASPLR 327

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
           +          I  ++ D    +R +     +   I+ A  +GI + +  G+I + N + 
Sbjct: 328 HADGSPAGAVLITRDETDAIEAERALRDSEERYRVIISALEEGITLQDERGVIRTANASA 387

Query: 482 SKLFGYPVEDILRKPFT----VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK-EE 536
            ++ G P+  ++           + ++        +   ++L        + LG  + + 
Sbjct: 388 ERILGLPMAQLVGSTMMGPSCRLVREDGSPFPLEMVPSQIALRTGAPQSGVLLGLERLDG 447

Query: 537 KLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLS-------HAKKIAEKESSHK 585
            +L L +  + L            +  DI+  K+ + +          A++ AE  S  K
Sbjct: 448 SVLWLSVNAQPLRGEDGSVAGVVSSFFDITARKRAEEERQGLLAAAESARQEAEAASHLK 507

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
            +FLA +SHE+RTPLTA++G+  ++   R G L   R  +    ++R+      +++DLL
Sbjct: 508 DEFLATMSHELRTPLTAVLGWVRML---RTGKLPEERRDKALETVERNAQAQAQLIDDLL 564

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
           DIS+I +GK+ L    + L   +  A+ +V+  A+ K + + +     +  +  D   ++
Sbjct: 565 DISRIMAGKLRLDVHRIELVPVIDAALEVVRPAADAKGVRLLSLLEPGVGAVAGDAGRLQ 624

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           Q+  N+L+NA+ FTP GG + I     ++    + V DTG G+    L    + F Q  +
Sbjct: 625 QVVWNLLNNAVKFTPRGGVVRIRLD-RADGSAEITVSDTGQGIEPAFLPYVFEQFRQAES 683

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFPLY 811
               R  G GLGL + K++V+ + G  +  S    +G    +  PL 
Sbjct: 684 GTTRRHGGLGLGLTIVKSLVEMHGGTAHALSDGEGRGATFVVQLPLA 730



 Score = 57.7 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 31/484 (6%), Positives = 109/484 (22%), Gaps = 45/484 (9%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIG--------MRLCDVSDILHIDPNNHIGDLLKRQN 141
           D  G ++  +    + +G    +++G          + +      ++        L+   
Sbjct: 375 DERGVIRTANASAERILGLPMAQLVGSTMMGPSCRLVREDGSPFPLEMVPS-QIALRTGA 433

Query: 142 TWYGKTTLW-PIEGTNLYVPIDLAALPIYSRNREFSG-FRGFGIVHVNRVDNDPRALGKR 199
              G       ++G+ L++ +   A P+   +   +G    F  +   +   + R     
Sbjct: 434 PQSGVLLGLERLDGSVLWLSV--NAQPLRGEDGSVAGVVSSFFDITARKRAEEERQGLLA 491

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
             +      E                 +      L     + +       +D  L+T + 
Sbjct: 492 AAESARQEAEAASHLKDEFLATMSHELRTPLTAVLGWVRMLRTGKLPEERRDKALETVER 551

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFG--TLQNNSKESFEYLSHRNHPSLSAYFDE 317
                 +      +    +               + + + E     +      L +  + 
Sbjct: 552 NAQAQAQLIDDLLDISRIMAGKLRLDVHRIELVPVIDAALEVVRPAADAKGVRLLSLLEP 611

Query: 318 GENLTPETVDKCPIPFFVYSHGNLFYANP------SFLLLTKYKSVDDIEIAGGLSTLLD 371
           G         +     +   +  + +                   +   +   G+     
Sbjct: 612 GVGAVAGDAGRLQQVVWNLLNNAVKFTPRGGVVRIRLDRADGSAEITVSDTGQGIEPAFL 671

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
                     +     R     +  +     ++ +   + A++      A    +     
Sbjct: 672 PYVFEQFRQAESGTTRRHGGLGLGLTIVKSLVEMHGGTAHALSDGEGRGATFVVQLPLAA 731

Query: 432 GIEPEDVDTRINKRKMEIEVMQ---LCSILEATSDGIAIINREG--------------II 474
               +                +   L ++     + + + + +                +
Sbjct: 732 PPSHDRGRRLAALPSASAGSDRPPELAAL-----NVLVVEDEDDTRELLVTMLEQCGARV 786

Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI--LSLDLRQTLEKITLGS 532
            + + A   L              V +       +   +  +   S      +       
Sbjct: 787 TAVSSAAEALLAVKALQPDVLVSDVAMPGEDGYALIRKIRALPAASGGRTPAIALTAYAR 846

Query: 533 TKEE 536
           T++ 
Sbjct: 847 TEDR 850


>gi|21229203|ref|NP_635125.1| two component system histidine kinase [Methanosarcina mazei Go1]
 gi|20907772|gb|AAM32797.1| Two component system histidine kinase [Methanosarcina mazei Go1]
          Length = 715

 Score =  352 bits (902), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 106/417 (25%), Positives = 197/417 (47%), Gaps = 12/417 (2%)

Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
                   +   E  L+      +    +  +   NG+  E     + +++++ +  +  
Sbjct: 304 VEVDDFVTRVRSEKDLSQRLSLEDNDELYRLSREINGMLNEIY---LAEQELKAQAREKK 360

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
            +L++ ++    ++ E  I+  N+A  +     +E  +     V    + P V +  L E
Sbjct: 361 VLLDSLNELAVFVDTELKIIWANKAALEYMNMGLEKAIGVCLKVAPGISGPLVEHLNLEE 420

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSH 573
           I +   +++ E     + ++ ++   + I              T  D++E K+ +  L H
Sbjct: 421 IFTTGEKKSGE----YTAQDGRVWFAQAIPVPDEQGKIIGILQTCRDVTERKEAER-LLH 475

Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
            K+IAE  +  KS+FLA +SHE+RTPL +IIGFS+++  + +G L N +       I RS
Sbjct: 476 EKQIAEIANRTKSEFLANMSHELRTPLNSIIGFSDLLYEKVYGEL-NEKQARAVGNISRS 534

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693
           G  +L+++ND+LD+SK+E+GKM L ++   L   ++   SL+   A+ K I I       
Sbjct: 535 GKHLLNLINDILDLSKVEAGKMELDYKEFELAGKLNAIKSLLSPIADRKNIEIDIEVDKG 594

Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753
           +  I AD     QI  N++ NAI F+   G + +       + V + V+D G+G+   + 
Sbjct: 595 LTHIRADEARFVQIMYNLMDNAIKFSHENGLVKVRAE-RKGDLVEITVKDKGIGIKEEDQ 653

Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            K  KPF Q+ +      +GTGLGL L K +V+ + G+ +  S   +G+      P+
Sbjct: 654 CKLFKPFSQVDSFSSKTFQGTGLGLSLVKQIVNLHGGEVWFNSKIGEGSTFAFTVPI 710



 Score = 40.8 bits (94), Expect = 1.00,   Method: Composition-based stats.
 Identities = 19/178 (10%), Positives = 45/178 (25%), Gaps = 22/178 (12%)

Query: 279 NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP-IPFFVYS 337
           +L+Q    +    L   S+E    L+              E      +D    +  FV +
Sbjct: 318 DLSQRLSLEDNDELYRLSREINGMLNEIYLAEQELKAQAREKKV--LLDSLNELAVFVDT 375

Query: 338 HGNLFYANPSFLLLTKYKSVDDIE----IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393
              + +AN + L          I     +A G+S  L      +                
Sbjct: 376 ELKIIWANKAALEYMNMGLEKAIGVCLKVAPGISGPLVEHLNLEEIFTT--------GEK 427

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV 451
            +        +                 ++  + +       +  + +  +R +  + 
Sbjct: 428 KSGEYTAQDGR-------VWFAQAIPVPDEQGKIIGILQTCRDVTERKEAERLLHEKQ 478


>gi|209523453|ref|ZP_03272008.1| PAS/PAC sensor signal transduction histidine kinase [Arthrospira
           maxima CS-328]
 gi|209496195|gb|EDZ96495.1| PAS/PAC sensor signal transduction histidine kinase [Arthrospira
           maxima CS-328]
          Length = 655

 Score =  351 bits (901), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 95/656 (14%), Positives = 217/656 (33%), Gaps = 57/656 (8%)

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244
                        +   +    L          +  +            L   NK+    
Sbjct: 25  QEIADRLRVEEALRASSELLQTLINAIPDLVCFKDSQGRWLEANQAVLDLLQLNKIDYRG 84

Query: 245 EYYAHKDDVLKTEKY---------------PLLTSEESSLPEQEDFHTINLNQYTKKQYF 289
           +  A   D++K                         +    E+E     +          
Sbjct: 85  KTDAEIFDIIKHVNALSCYQEILLDSQCKDEKAWQLQKVYQEEEKIRQNDGILRIYDVMK 144

Query: 290 GTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSF 348
             L   +      +      +     +         V+            G +   N   
Sbjct: 145 VPLFTATGVRKGLVILGRDITAKKQAEADYIRLASMVESSEDAIIGNTLDGIIISWNEGA 204

Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
             +  Y +   I     +  L + P        + +    ++                  
Sbjct: 205 KQIYGYSASQAIGSPISMLALPERPNEMP----RILTSITAEGGIDHYETIHVR---QDG 257

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468
            ++ ++       +   +    + I  +    +  +  +E    Q   IL++  +GI  +
Sbjct: 258 ANIDVSLTISPIKDALGQITGISMIARDISYRKRIECTLEQLRHQNELILDSAGEGICGL 317

Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFL-----------EQNTPSVMNHYLTEIL 517
           N++G I   N A +++ GY + +++                           +     + 
Sbjct: 318 NQDGKITFINPAGARMTGYDIRELIMSDLRQITKGHCRSQTPGEPHPDSLQPSPIFATLE 377

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHA 574
              +R  ++ +     K+  +L +  +   +          +T  DI+E +  +      
Sbjct: 378 DGKVRHVIDGVFW--RKDGTILPVEYVSTPMRQEGAIIGAVITFKDITERQAME------ 429

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
                     K +F++ VSHE+RTPLT+I G   +  +         +     +    + 
Sbjct: 430 --------KMKDEFISVVSHELRTPLTSIRGSLGL-LSSGLLASSPEKSQRMLDIAMFNC 480

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
           + ++ +VND+LD+ ++ SG++ +H + V+L + + +A   +   A +  + +        
Sbjct: 481 DRLMRLVNDILDLERMHSGQLPMHKDWVNLADLMIQAADEMLPVAEKAGVDLCVI--PLE 538

Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELE 754
            +++ D   + Q+  N+LSN+I F+ +  +I  +     N+ V++ VRD G G+   ++E
Sbjct: 539 FKVMVDRDRIIQMLTNLLSNSIRFSGANKRIDFTAKPQEND-VLISVRDRGRGIPPDKIE 597

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
                F Q+  S   +  GTGLGL + +++V  + GK +  S    G+   +  P+
Sbjct: 598 TIFGRFQQVDASDSRQNGGTGLGLAICRSIVQQHGGKIWAESIFGAGSTFFVSLPI 653



 Score = 68.1 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 41/393 (10%), Positives = 100/393 (25%), Gaps = 32/393 (8%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS----DILHIDPNNHIG--DLLKRQNTW 143
           D+ G   E ++ +   +        G    ++      +  +     I      K +  W
Sbjct: 59  DSQGRWLEANQAVLDLLQLNKIDYRGKTDAEIFDIIKHVNALSCYQEILLDSQCKDEKAW 118

Query: 144 YGKTTLWP----IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199
             +          +   +    D+  +P+++      G    G            A   R
Sbjct: 119 QLQKVYQEEEKIRQNDGILRIYDVMKVPLFTATGVRKGLVILG--RDITAKKQAEADYIR 176

Query: 200 LDKKFSHLHEI-----KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254
           L        +        G      E        S    +     + +L E       +L
Sbjct: 177 LASMVESSEDAIIGNTLDGIIISWNEGAKQIYGYSASQAIGSPISMLALPERPNEMPRIL 236

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
            +           ++  ++D   I+++  T       L   +  S           +   
Sbjct: 237 TSITAEGGIDHYETIHVRQDGANIDVSL-TISPIKDALGQITGISMIARDISYRKRIECT 295

Query: 315 FDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEI------AGGLS 367
            ++  +     +D        +   G + + NP+   +T Y   + I         G   
Sbjct: 296 LEQLRHQNELILDSAGEGICGLNQDGKITFINPAGARMTGYDIRELIMSDLRQITKGHCR 355

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
           +        D+    P+     D             + +    L + ++      Q    
Sbjct: 356 SQTPGEPHPDSLQPSPIFATLEDGKVRHV-IDGVFWRKDG-TILPVEYVSTPMR-QEGAI 412

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
           +       +  +    ++ ME    +  S++  
Sbjct: 413 IGAVITFKDITE----RQAMEKMKDEFISVVSH 441



 Score = 48.9 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/222 (9%), Positives = 58/222 (26%), Gaps = 20/222 (9%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS------------DILHIDPNNHIGDL 136
           ++  G +  I+    +  G    ++I   L  ++                + P+     L
Sbjct: 317 LNQDGKITFINPAGARMTGYDIRELIMSDLRQITKGHCRSQTPGEPHPDSLQPSPIFATL 376

Query: 137 LKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRAL 196
              +         W  +GT   +P++  + P+  +     G                  +
Sbjct: 377 EDGKVRHVIDGVFWRKDGTI--LPVEYVSTPMR-QEGAIIGA--VITFKDITERQAMEKM 431

Query: 197 GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256
               D+  S +    +   +  +    + S            ++  +  +   +   L  
Sbjct: 432 K---DEFISVVSHELRTPLTSIRGSLGLLSSGLLASSPEKSQRMLDIAMFNCDRLMRLVN 488

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE 298
           +   L       LP  +D+  +             +   +  
Sbjct: 489 DILDLERMHSGQLPMHKDWVNLADLMIQAADEMLPVAEKAGV 530


>gi|254501085|ref|ZP_05113236.1| hypothetical protein SADFL11_1121 [Labrenzia alexandrii DFL-11]
 gi|222437156|gb|EEE43835.1| hypothetical protein SADFL11_1121 [Labrenzia alexandrii DFL-11]
          Length = 837

 Score =  351 bits (901), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 131/743 (17%), Positives = 260/743 (34%), Gaps = 50/743 (6%)

Query: 92  HGYLKEI--SEELPKTIGNYAFK-MIGMRLCDVSDILHI-------DPNNHIGDLLKRQN 141
              +     +  +P+  G    K  +      +             D   H+  L +   
Sbjct: 114 EQRVIVWTGNGAMPQIWGILPEKSGVPRPPAQLLAFGSWLTAKCAGDLERHLDLLFRTGE 173

Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
           T+   TTL    G+ +          +  R R+ +G R               A      
Sbjct: 174 TFN--TTLKTRTGSYVEALGRTTGGAVVLRLRDLTGER-----QAQAELQTRNAKISGEL 226

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
                L +     +     + ++                 +  +  A   D        +
Sbjct: 227 HMLHALLDAMPAPAWQRDAEGNVIWANDAYAEAVEMPDAQAAVKEGATFLDAAARTAMAV 286

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
             +E+     +         +         +  N   +   +               E  
Sbjct: 287 QRNEDGCFSARIPIVASGQRRV---FEITDVNANVGGAGIAVDISELEQAQKELGRAEEF 343

Query: 322 TPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKS--VDDIEIAGGLSTLLDAPKLSDN 378
              T+D+      +YS    L + N +F  L       ++     G +   L A +    
Sbjct: 344 HGRTLDQLAAAVAIYSGDRKLQFYNAAFRQLWDLDPALLESHPEDGAVLDALRAARKLPE 403

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
            A       +      +  AR          +L +   P              G      
Sbjct: 404 QADYRGWRNKMLEGYQSLEARESWWHLPDGRTLRVIANPHP-----------QGGVTYIY 452

Query: 439 DTRINKRKMEIEVMQLCSI----LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
           +    +  +E     L  +    L+  S+ +A+   +G +   N A  +++    E + R
Sbjct: 453 ENVTEQLDLESRYNALTRVQGETLDNLSEAVAVFGSDGKLRLWNPAFGRIWDLEEEQLSR 512

Query: 495 KP-----FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
            P      +     +        L   ++  +    + ++        +L    +     
Sbjct: 513 FPHVNEVVSACALNDYEKTAWEQLASSVTGLVDNRTQNVSRLERHNGAVLDYATVPLP-- 570

Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                 +T  D+++    +  L    +  E+    K+ F+  VS+E+R+PLT IIGF+++
Sbjct: 571 -DGGTLVTFVDVTDSVNVERALLEKNEALEQADQIKNAFIQHVSYELRSPLTNIIGFAQL 629

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           + + +FG L   +  EYA+YI  S + +L I+ND+LD++ +++G M L    V L   V 
Sbjct: 630 LADPKFGDLT-EKQGEYADYIQSSSSALLAIINDILDLATLDAGIMELDLREVDLASTVE 688

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
            A+  ++    E RI +RT   +NI  ++AD + ++Q+  N++SNA+ ++   G + IS 
Sbjct: 689 AAVEGLKDRIAEARINLRTQVPDNIGNMIADEKRLRQVLFNLISNAVRYSEPDGVVDISC 748

Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
               +++V   V+D G+G+    L +    F  + +    R +G GLGL + K+ V+ + 
Sbjct: 749 D-RDDDKVTFVVQDHGLGIPAEILTQVFNRF--VGHDTGARRQGAGLGLAIVKSFVELHG 805

Query: 790 GKFYIFSTPAKGTLIEIIFPLYD 812
           G   I S   KGT +  +FP + 
Sbjct: 806 GTVDIDSVVGKGTTVTCVFPAHP 828



 Score = 83.5 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 48/497 (9%), Positives = 149/497 (29%), Gaps = 64/497 (12%)

Query: 137 LKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN-----------------REFSGFR 179
           ++ + TW   +      G+   + + L+  P  + +                     G  
Sbjct: 9   VRGRTTWQDWSLKTIKLGSVSGLAMALSGSPAAAADFISGTLAAINPDTMVMFGALGGMC 68

Query: 180 GFGI---VHVNRVDNDPRALGKRLDKKFSHL---HEIKKGHSSVEKEKYDIFSQQSPPPH 233
            F +   + + R       L + L+++   L    +  +   + ++++  +++     P 
Sbjct: 69  AFAVTAAIALVRHRAQSGQLTEALEQEKRDLKFRVDRLETMLNTDEQRVIVWTGNGAMPQ 128

Query: 234 L-----------RMKNKVSSL-TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLN 281
           +           R   ++ +  +   A     L+     L  + E+     +      + 
Sbjct: 129 IWGILPEKSGVPRPPAQLLAFGSWLTAKCAGDLERHLDLLFRTGETFNTTLKTRTGSYVE 188

Query: 282 QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GN 340
              +      +      + E  +     + +A      ++    +D  P P +     GN
Sbjct: 189 ALGRTTGGAVVLRLRDLTGERQAQAELQTRNAKISGELHMLHALLDAMPAPAWQRDAEGN 248

Query: 341 LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400
           + +AN ++         + +E+    + + +     D  A   + + R++  C +A    
Sbjct: 249 VIWANDAYA--------EAVEMPDAQAAVKEGATFLDAAARTAMAVQRNEDGCFSARI-- 298

Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
                     +A       +      N+   GI  +  +    ++++          L+ 
Sbjct: 299 --------PIVASGQRRVFEITDVNANVGGAGIAVDISELEQAQKELGRAEEFHGRTLDQ 350

Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP-----FTVFLEQNTPSVMNHY--L 513
            +  +AI + +  +   N A  +L+      +   P                    Y   
Sbjct: 351 LAAAVAIYSGDRKLQFYNAAFRQLWDLDPALLESHPEDGAVLDALRAARKLPEQADYRGW 410

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH 573
              +    +    + +     + + L +             +    +++E    +++ + 
Sbjct: 411 RNKMLEGYQSLEARESWWHLPDGRTLRVIANPHP---QGGVTYIYENVTEQLDLESRYNA 467

Query: 574 AKKIAEKESSHKSDFLA 590
             ++  +   + S+ +A
Sbjct: 468 LTRVQGETLDNLSEAVA 484



 Score = 65.0 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 42/394 (10%), Positives = 107/394 (27%), Gaps = 39/394 (9%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK 146
           W  DA G +   ++   + +     +     + + +  L       +         +   
Sbjct: 241 WQRDAEGNVIWANDAYAEAVEMPDAQA---AVKEGATFLDAAARTAMAVQRNEDGCFS-- 295

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
               PI  +      +     I   N    G    GI          +    R ++    
Sbjct: 296 -ARIPIVASGQRRVFE-----ITDVNANVGGA---GIAVDISELEQAQKELGRAEEFHGR 346

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
             +      ++      +    +     ++ +   +L E +     VL   +      E+
Sbjct: 347 TLDQLAAAVAIYSGDRKLQFYNAAF--RQLWDLDPALLESHPEDGAVLDALRAARKLPEQ 404

Query: 267 SSLP-----EQEDFHTINLNQYTKKQYFGTLQNN-------SKESFEYLSHRNHPSLSAY 314
           +          E + ++   +       G               ++ Y +      L + 
Sbjct: 405 ADYRGWRNKMLEGYQSLEARESWWHLPDGRTLRVIANPHPQGGVTYIYENVTEQLDLESR 464

Query: 315 FDEGENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
           ++    +  ET+D       V+ S G L   NP+F  +   +  + +     ++ ++ A 
Sbjct: 465 YNALTRVQGETLDNLSEAVAVFGSDGKLRLWNPAFGRIWDLE-EEQLSRFPHVNEVVSAC 523

Query: 374 KLSDNNAIKPVMLYRS-DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
            L+D        L  S        +  +  ++ +    L    +P               
Sbjct: 524 ALNDYEKTAWEQLASSVTGLVDNRTQNVSRLERHNGAVLDYATVPLPDG-------GTLV 576

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
              +  D+   +R +  +   L    +   +   
Sbjct: 577 TFVDVTDSVNVERALLEKNEALEQA-DQIKNAFI 609



 Score = 62.7 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/303 (10%), Positives = 86/303 (28%), Gaps = 35/303 (11%)

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYA--NPSFLLLTKYKSVDDIEI 362
                 L+   ++ +      VD+            +     N +   +           
Sbjct: 82  RAQSGQLTEALEQEKRDLKFRVDRL-ETMLNTDEQRVIVWTGNGAMPQIWGILPEKSGVP 140

Query: 363 AGGLSTLLDAPKLSDN---NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
                 L     L+     +  + + L          + +  T  +              
Sbjct: 141 RPPAQLLAFGSWLTAKCAGDLERHLDLLFRTGETFNTTLKTRTGSY-------------V 187

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ-------LCSILEATSDGIAIINREG 472
           +A              +    R  + +++    +       L ++L+A        + EG
Sbjct: 188 EALGRTTGGAVVLRLRDLTGERQAQAELQTRNAKISGELHMLHALLDAMPAPAWQRDAEG 247

Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
            ++  N A ++    P      K    FL+    + M      +   +      +I + +
Sbjct: 248 NVIWANDAYAEAVEMPDAQAAVKEGATFLDAAARTAM-----AVQRNEDGCFSARIPIVA 302

Query: 533 TKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
           + + ++  +  +   +  +        DISE +Q + +L  A++   +     +  +A  
Sbjct: 303 SGQRRVFEITDVNANVGGAG----IAVDISELEQAQKELGRAEEFHGRTLDQLAAAVAIY 358

Query: 593 SHE 595
           S +
Sbjct: 359 SGD 361



 Score = 38.5 bits (88), Expect = 4.5,   Method: Composition-based stats.
 Identities = 25/178 (14%), Positives = 52/178 (29%), Gaps = 16/178 (8%)

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST- 477
                      +             KR ++  V +L ++L          + + +I+ T 
Sbjct: 71  AVTAAIALVRHRAQSGQLTEALEQEKRDLKFRVDRLETMLNT--------DEQRVIVWTG 122

Query: 478 NRAVSKLFGY-PVEDILRKPFTVFLEQNTPSVMNHY--LTEILSLDLRQTLEKITLGSTK 534
           N A+ +++G  P +  + +P    L   +         L   L L  R      T   T+
Sbjct: 123 NGAMPQIWGILPEKSGVPRPPAQLLAFGSWLTAKCAGDLERHLDLLFRTGETFNTTLKTR 182

Query: 535 EEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
               +                L + D++  +Q + +L         E       L  +
Sbjct: 183 TGSYVEALGRTT----GGAVVLRLRDLTGERQAQAELQTRNAKISGELHMLHALLDAM 236


>gi|261251052|ref|ZP_05943626.1| hypothetical protein VIA_001071 [Vibrio orientalis CIP 102891]
 gi|260937925|gb|EEX93913.1| hypothetical protein VIA_001071 [Vibrio orientalis CIP 102891]
          Length = 1319

 Score =  351 bits (901), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 96/383 (25%), Positives = 170/383 (44%), Gaps = 11/383 (2%)

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
           +       R  ++K+  +      IL AT + +  ++ +G  L+ N    +L G P+++I
Sbjct: 452 LSQNIELQRKAEQKVLEQSQLNQEILNATPNPMYCLSSQGNYLTINAKFCELCGLPMQEI 511

Query: 493 LRKPFTVFLEQNTP-SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL-RIIIKKLPF 550
           + K       Q       +    ++      +  E   L    + + + +          
Sbjct: 512 IGKTPQDVFSQQDASQCFSEAHQQLTLKQGSKNYELSVLDQHLQTRDMLVCEASFSNSHG 571

Query: 551 -SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
             S     + D++E K  + +L  AK+ A+  S  K +FLA +SHEIRTP+  I+G   +
Sbjct: 572 KVSGIVGILLDLTERKLMETELRDAKETADAMSRAKGEFLANMSHEIRTPMNGILGMVHL 631

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
             N    P       +Y   I+ S   +L I+ND+LD SKIE GK+N+     SLDE   
Sbjct: 632 ALNTELDPA----QHKYLTRINESAKNLLGIINDILDFSKIEVGKLNIETIDFSLDEVFD 687

Query: 670 EAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII-I 727
              +++ L A EK+I         +P  ++ D   + Q+ +N+  NA+ FT  G  ++ +
Sbjct: 688 NLTNVISLKAQEKKIEFLLDIEPQVPTGLIGDPLRIGQVLVNLCGNAVKFTEQGEVVVAV 747

Query: 728 STTHTSNEEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
                +  +V+    V+DTG+G+   ++      F Q  +S      GTGLGL ++K +V
Sbjct: 748 RIEMLTERDVVLHFSVKDTGIGIDKEKIAHLFDAFSQADSSITREFGGTGLGLSISKQLV 807

Query: 786 DANMGKFYIFSTPAKGTLIEIIF 808
           +   G+  + ST   G+      
Sbjct: 808 ELMGGQLSVSSTLGAGSTFAFTI 830


>gi|289623553|ref|ZP_06456507.1| two-component sensor/regulator [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|289649156|ref|ZP_06480499.1| two-component sensor/regulator [Pseudomonas syringae pv. aesculi
           str. 2250]
 gi|330867856|gb|EGH02565.1| two-component sensor/regulator [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 576

 Score =  351 bits (901), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 122/529 (23%), Positives = 209/529 (39%), Gaps = 50/529 (9%)

Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS-----TLLDAPKLSDNNAIKPVM-- 385
                HG +   N     +  Y S D +             L+       +    P+   
Sbjct: 48  IATDEHGVIQIFNVGAERMLGYHSEDVVNKITPADISDPAELIIRAAALSHELNTPITPG 107

Query: 386 ---LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
              L       I     L  I+ +     AM        +     +    I  ++   + 
Sbjct: 108 FEALVFKASRGIEDIYELTYIRKDGSRLSAM-VSVTSLRDSAETIIGYLLIGTDNTARKQ 166

Query: 443 NK-------RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
            +       +++  +     S++E+  D + + + +GII   N+ +  L G   ++++  
Sbjct: 167 EEEAQALLDQRLRDQQFYTRSLIESNIDALMMTDPQGIISDVNKQMMALTGRTRDELIGA 226

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--C 553
           P   F     P+  +  +  +LS       E         E ++S               
Sbjct: 227 PCKNFF--TDPASADAAIKRVLSEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRKLKG 284

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
                 D++E K+ +  L       E  S  KS+FLA +SHE+RTPL A+IGFSE +K+ 
Sbjct: 285 VFAAARDVTERKRFERTLEEKNVELEHASHMKSEFLATMSHELRTPLNAVIGFSEALKDG 344

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
             G + +     Y   I  SG  +L ++ND+LD+SK+E+G M L  EPV LDE +S ++ 
Sbjct: 345 MVGDMTDA-QRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELEPVDLDELLSNSLL 403

Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT- 732
           +V+  A  +RI ++     +   +  D R  KQI  N+L+NA+ F+  GG + +S     
Sbjct: 404 IVREQAALQRIQLKLETEADFGLLELDRRKTKQIVYNLLANAVKFSEPGGWVTLSVRQVS 463

Query: 733 -------SNEE---------------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
                                     + L V DTG+G+   ++ K  K F QI +    +
Sbjct: 464 FAQAGVIEGGWPAHTFPLPSSDYEQFLELSVSDTGIGIAQSDMNKLFKAFSQIDSGLARK 523

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819
            EGTGLGL + K + + + G   + S    G    +  P+     P +C
Sbjct: 524 FEGTGLGLAMVKQLTELHGGCVAVASVKDLGARFVVWLPI----RPPEC 568



 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/238 (11%), Positives = 64/238 (26%), Gaps = 7/238 (2%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            D  G + ++++++    G    ++IG    +         +  I  +L        + T
Sbjct: 199 TDPQGIISDVNKQMMALTGRTRDELIGAPCKNFFTDP-ASADAAIKRVLSEHKVSDYELT 257

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           +   +GT     +   A   + R+R+  G   F                +  + +  H  
Sbjct: 258 VRAYDGTETV--VSYNAATFHDRDRKLKGV--FAAARDVTERKRFERTLEEKNVELEHAS 313

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK-VSSLTEYYAHKDDVLKTEKYPLLTSEES 267
            +K    +    +              +K+  V  +T+        +      LL+    
Sbjct: 314 HMKSEFLATMSHELRTPLNAVIGFSEALKDGMVGDMTDAQRRYIGDIFNSGQHLLSLIND 373

Query: 268 SLP-EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
            L   + +   + L             +      +    R    L    D G      
Sbjct: 374 ILDLSKVEAGMMTLELEPVDLDELLSNSLLIVREQAALQRIQLKLETEADFGLLELDR 431



 Score = 44.2 bits (103), Expect = 0.098,   Method: Composition-based stats.
 Identities = 27/270 (10%), Positives = 70/270 (25%), Gaps = 36/270 (13%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGM-RLCDVSDILHI------------DPNNHIGD 135
            D HG ++  +    + +G ++  ++      D+SD   +             P     +
Sbjct: 50  TDEHGVIQIFNVGAERMLGYHSEDVVNKITPADISDPAELIIRAAALSHELNTPITPGFE 109

Query: 136 LL----KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN 191
            L     R      + T    +G+   +   ++   +        G+   G    N    
Sbjct: 110 ALVFKASRGIEDIYELTYIRKDGS--RLSAMVSVTSLRDSAETIIGYLLIGT--DNTARK 165

Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL------------RMKNK 239
                   LD++   L + +    S+ +   D      P   +            R +++
Sbjct: 166 QEEEAQALLDQR---LRDQQFYTRSLIESNIDALMMTDPQGIISDVNKQMMALTGRTRDE 222

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
           +          D          + SE      +      +  +        T  +  ++ 
Sbjct: 223 LIGAPCKNFFTDPASADAAIKRVLSEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRKL 282

Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
               +     +    F+         ++  
Sbjct: 283 KGVFAAARDVTERKRFERTLEEKNVELEHA 312


>gi|56421266|ref|YP_148584.1| two-component sensor histidine kinase [Geobacillus kaustophilus
           HTA426]
 gi|56381108|dbj|BAD77016.1| two-component sensor histidine kinase (phosphate regulation)
           [Geobacillus kaustophilus HTA426]
          Length = 582

 Score =  351 bits (901), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 97/395 (24%), Positives = 178/395 (45%), Gaps = 22/395 (5%)

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINK--RKMEIEVMQLCSILEATSDGIAIINREGII 474
                +               +   + +  R  EI+  +L +++E    G+  I+  G I
Sbjct: 204 AARVPDGEYNEAGMLVRSINRLARHLQEMSRAREIQTDRLHTLIENVGSGLLFIDHRGHI 263

Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
              NRA    F     D L +P+   L           +   ++    +   ++T+G  +
Sbjct: 264 SLINRAFQTQFHLDPSDCLHRPYADVLPHGDIVRFIDDI--FITETTMRRHMRLTIGIER 321

Query: 535 EEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
           +   +    II          +  HDI+E K+ +                + DF+A VSH
Sbjct: 322 KHFDVYGAPIIGTNAEWKGIVVVFHDITELKRLE--------------QIRKDFVANVSH 367

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           E++TP+T+I GF+E + +             +   I +    +  +V +LLD+SKIE   
Sbjct: 368 ELKTPVTSIKGFAETLLDGAM--KDEAALEHFLTIILKESERLQTLVEELLDLSKIEQHG 425

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714
             L  E V + + ++EA ++ +  A EK+I +     + +  I  D   +KQI LN+L+N
Sbjct: 426 FQLQLEDVDIAQVIAEAAAVFRQKAAEKQIDLHIESPSGL-VIRGDRNRMKQILLNLLAN 484

Query: 715 AIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           AI +TP  G++ +     + +EV++ V+DTG+G+   E+ +  + F ++  ++     GT
Sbjct: 485 AITYTPEHGRVAVEAE-ETEKEVLIHVKDTGIGIEEKEIPRIFERFYRVDKARSRDSGGT 543

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GLGL + K +V+A+ G   + S   +GT+  I FP
Sbjct: 544 GLGLSIVKHLVEAHHGYITVASKVGRGTVFTIHFP 578


>gi|297529109|ref|YP_003670384.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           C56-T3]
 gi|297252361|gb|ADI25807.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           C56-T3]
          Length = 582

 Score =  351 bits (901), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 97/395 (24%), Positives = 177/395 (44%), Gaps = 22/395 (5%)

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINK--RKMEIEVMQLCSILEATSDGIAIINREGII 474
                +               +   + +  R  EI+  +L +++E    G+  I+  G I
Sbjct: 204 AARVPDGEYNEAGMLVRSINRLARHLQEMSRAREIQTDRLHTLIENVGSGLLFIDHRGHI 263

Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
              NRA    F     D L +P+   L           +   ++    +   ++T+G  +
Sbjct: 264 SLINRAFQTQFHLDPSDCLHRPYADVLPHGDIVRFIDDI--FITETTMRRHMRLTIGIER 321

Query: 535 EEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
           +   +    II          +  HDI+E K+ +                + DF+A VSH
Sbjct: 322 KHFDVYGAPIIGTNAEWKGIVVVFHDITELKRLE--------------QIRKDFVANVSH 367

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           E++TP+T+I GF+E + +             +   I +    +  +V +LLD+SKIE   
Sbjct: 368 ELKTPVTSIKGFAETLLDGAM--KDEAALEHFLTIILKESERLQTLVEELLDLSKIEQHG 425

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714
             L  E V + + ++EA ++ +  A EK+I +     + +  I  D   +KQI LN+L+N
Sbjct: 426 FQLQLEDVDIAQVIAEAAAVFRQKAAEKQIDLHIESPSGL-VIRGDRNRMKQILLNLLAN 484

Query: 715 AIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           AI +TP  G++ +       +EV++ V+DTG+G+   E+ +  + F ++  ++     GT
Sbjct: 485 AITYTPEHGRVAVEAE-EREKEVLIHVKDTGIGIEEKEIPRIFERFYRVDKARSRDSGGT 543

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GLGL + K +V+A+ G   + S   +GT+  I FP
Sbjct: 544 GLGLAIVKHLVEAHHGYITVASKVGRGTVFTIHFP 578


>gi|126740969|ref|ZP_01756652.1| sensory box sensor histidine kinase/response regulator [Roseobacter
           sp. SK209-2-6]
 gi|126717895|gb|EBA14614.1| sensory box sensor histidine kinase/response regulator [Roseobacter
           sp. SK209-2-6]
          Length = 753

 Score =  351 bits (901), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 106/623 (17%), Positives = 231/623 (37%), Gaps = 33/623 (5%)

Query: 218 EKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHT 277
           E ++  +        H   +               V       +     +    +     
Sbjct: 3   EAQRTKLGPVARHQAHFSPEGLFERYLRGQIRLLWVRLAYCAGMSALLVALFSLE--TGL 60

Query: 278 INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS 337
             L      +   TL                P                      PF++  
Sbjct: 61  AALVLTWFAELTDTLVLRYARLRMQRGAALRPLELLTAFSSLFYGALVSAAAVAPFWMED 120

Query: 338 HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK-------PVMLYRSD 390
            G     N    L+  + +         +  ++   +L+    +         ++    D
Sbjct: 121 GG----LNGQTELILGFPAAFLTGATLNIGMVISYHRLAVLARLACYAVTPLLLLRVWQD 176

Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM--- 447
              +    RL  +         + FI + +         Q     +  +     +++   
Sbjct: 177 AWLLNTDLRLQVVGLVALYVALVWFIVYAQRGFVRTRTLQLTQAMQQQELESAYQRLLEQ 236

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
           + E  +L  +    +D I +I++ G     N+A +K  GY  +++  +   + L      
Sbjct: 237 QTESRRLALVARHANDSILMIDKTGRTEWVNKAFTKTTGYSFKEVYGQDLGLLLNHPDTD 296

Query: 508 VMNHYLTEILSLDLR-QTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDIS 562
            +   +  I     R ++     L   K+ + + +  I   +  +      Y     D++
Sbjct: 297 PV--AVKTINEGRARGESFRVELLNKRKDGQAIWVETIQVPILGADGTLQSYIAIERDVT 354

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           + K+  + L  A+  AE+ +  K++FLA +SHEIRTP+  ++G +++++        +  
Sbjct: 355 QAKEHADHLEEARAAAEEGARAKAEFLANMSHEIRTPMNGVMGMAQLLEETEL----DED 410

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
              Y + I  S   +L ++ND+LD+SK+++GK+ L+           + + L+++ A  K
Sbjct: 411 QRLYTDTILSSARTLLALINDILDLSKLDAGKIELNPTDFDPGLLFEDTLRLMRVQAEAK 470

Query: 683 RILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS----NEEV 737
            + +      ++P R+  D   +KQI +N++ NA+ FT  G +++I+            +
Sbjct: 471 ELELTYEPQADLPTRLRGDDNRIKQILINLIGNAVKFTDEG-KVMIALASEELPDGRAMI 529

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
              V+DTGVG+   +L    + F Q   +   R  G+GLGL +++ +V+   G+  + S 
Sbjct: 530 RFSVKDTGVGIAEDKLSGIFERFTQADAAINRRYGGSGLGLSISRHLVNLMEGEISVASK 589

Query: 798 PAKGTLIEIIFPLYDTSHPHDCI 820
           P +G+   ++ PL       + +
Sbjct: 590 PGQGSCFTVVLPLEQVEPAEEVV 612



 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 42/390 (10%), Positives = 102/390 (26%), Gaps = 24/390 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNTWYGK 146
           ID  G  + +++   KT G    ++ G  L  + +    DP     I +   R  ++  +
Sbjct: 257 IDKTGRTEWVNKAFTKTTGYSFKEVYGQDLGLLLNHPDTDPVAVKTINEGRARGESFRVE 316

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                 +G    + ++   +PI   +     +    I        +     +        
Sbjct: 317 LLNKRKDG--QAIWVETIQVPILGADGTLQSY--IAIERDVTQAKEHADHLEEARAAAEE 372

Query: 207 LHEIKKGHSSVEKEKYD-----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
               K    +    +       +           +       T+        L      +
Sbjct: 373 GARAKAEFLANMSHEIRTPMNGVMGMAQLLEETELDEDQRLYTDTILSSARTLLALINDI 432

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
           L   +    + E   T        +     ++  ++     L++     L       +N 
Sbjct: 433 LDLSKLDAGKIELNPTDFDPGLLFEDTLRLMRVQAEAKELELTYEPQADLPTRLRGDDNR 492

Query: 322 TPETVDKC-PIPFFVYSHGNLFYA-------NPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
             + +             G +  A       +   ++    K          LS + +  
Sbjct: 493 IKQILINLIGNAVKFTDEGKVMIALASEELPDGRAMIRFSVKDTGVGIAEDKLSGIFERF 552

Query: 374 KLSDNNAIKP-----VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
             +D    +      + L  S          +       + S     +P E+     E +
Sbjct: 553 TQADAAINRRYGGSGLGLSISRHLVNLMEGEISVASKPGQGSCFTVVLPLEQVEPAEEVV 612

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458
               +E  D+ +    R +  E  ++  +L
Sbjct: 613 ESPPLEESDLSSLAGLRLLVAEDNRVNRLL 642


>gi|189424609|ref|YP_001951786.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189420868|gb|ACD95266.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 995

 Score =  351 bits (901), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 121/562 (21%), Positives = 207/562 (36%), Gaps = 62/562 (11%)

Query: 273 EDFHTINLNQYTKKQYFGTLQNNSKESFEYL---SHRNHPSLSAYFDEGENLTPETVDKC 329
           E    I+            L ++                        E E       D  
Sbjct: 319 ERMEQIDPQHLADASPIKLLSDDEVGRLAATFNNLLTEVAQTDKRLRESETNFRTFFDTI 378

Query: 330 PIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK------ 382
               FV   +G +   N +      Y+  + +        L+  P    + A +      
Sbjct: 379 DHFLFVLDHNGLILKVNQTVTQRLGYEESELLGQ----HVLVIHPAERRDEAGRIITEML 434

Query: 383 -------PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
                  PV L   D   IA   ++    WN   +L                        
Sbjct: 435 AGTVSFCPVPLVCKDGRLIAVETQVVAGTWNGRPALFGITKDISV--------------- 479

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAI-INREGIILSTNRAVSKLFGYPVEDILR 494
                      ++    +      A+   +A+    +G+ L  N A  +  G+  ++++ 
Sbjct: 480 -----------LQESEEKFSRAFNASPALMALSTLEDGVYLDVNEAFLQQSGFARDEVIG 528

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS--LRIIIKKLPFSS 552
           K                    +   + ++   K  +  +K   LL       + +L    
Sbjct: 529 KSSLELGLFTDYEQRLEMRRLL--NEQQRVRNKKIVMRSKSGGLLYGLFSAELIRLQQRD 586

Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
                M DI++    ++ L  AK+ AE  S  KS+FLA +SHEIRTP+  ++G +E++  
Sbjct: 587 LLLTVMVDITDRVNAEHALLEAKQAAESASRAKSEFLANMSHEIRTPMNGVLGMAELLAF 646

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
                       +Y   I  SG+ +L ++ND+LD+SKIE+GK+ L +   SL +A+++ +
Sbjct: 647 TDLTA----EQEQYLACIKSSGDNLLALINDILDLSKIEAGKIELEYADFSLRKAINDVV 702

Query: 673 SLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
           +      + KR+      A ++P  +L D    KQI LN+LSNAI FT  G  + IS   
Sbjct: 703 TTQISAIHTKRLQFSCDLAEDLPEIVLGDQLRFKQILLNLLSNAIKFTDHGS-VSISAEL 761

Query: 732 TS----NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
                    V + V DTG+G+     +    PF Q  +S   R  GTGLGL +++ + + 
Sbjct: 762 IECHSFQSFVRVTVADTGIGIQAEARQTIFAPFTQADSSTTRRFGGTGLGLAISRQLAEL 821

Query: 788 NMGKFYIFSTPAKGTLIEIIFP 809
             G   + S P  G+   +  P
Sbjct: 822 MGGDIGLESEPGSGSRFYLDLP 843



 Score = 70.8 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 29/236 (12%), Positives = 70/236 (29%), Gaps = 14/236 (5%)

Query: 337 SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA 396
           S G +  AN          + +  +       L     +     +    +     T  A 
Sbjct: 263 SAGWILAAN--------LPTTEAYQPVQRF-RLFFLGGMILVMLMAVWGVRLLVGTFTAG 313

Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
            ARL       +        P +  +                +     +++        +
Sbjct: 314 LARLSERMEQIDPQHLADASPIKLLSDDEVGRLAATFNNLLTEVAQTDKRLRESETNFRT 373

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
             +     + +++  G+IL  N+ V++  GY   ++L +   V             +TE+
Sbjct: 374 FFDTIDHFLFVLDHNGLILKVNQTVTQRLGYEESELLGQHVLVIHPAERRDEAGRIITEM 433

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLR--IIIKKLPFSSCYSLTMHDISEWKQEKNK 570
           L+  +            K+ +L+++   ++               DIS  ++ + K
Sbjct: 434 LAGTVSFC---PVPLVCKDGRLIAVETQVVAGTWNGRPALFGITKDISVLQESEEK 486



 Score = 43.5 bits (101), Expect = 0.17,   Method: Composition-based stats.
 Identities = 35/271 (12%), Positives = 85/271 (31%), Gaps = 23/271 (8%)

Query: 61  SVSNTNYLDSENTFV--FDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRL 118
           + ++    +SE  F   FD I     F + +D +G + ++++ + + +G    +++G  +
Sbjct: 358 AQTDKRLRESETNFRTFFDTIDH---FLFVLDHNGLILKVNQTVTQRLGYEESELLGQHV 414

Query: 119 CDVSDILHIDPNNH-IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSG 177
             +      D     I ++L    ++     +   +G  + V   + A         ++G
Sbjct: 415 LVIHPAERRDEAGRIITEMLAGTVSFCPVPLV-CKDGRLIAVETQVVA-------GTWNG 466

Query: 178 FRG-FGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM 236
               FGI     V  +      R       L       S++E   Y   ++         
Sbjct: 467 RPALFGITKDISVLQESEEKFSRAFNASPALM----ALSTLEDGVYLDVNEAFLQQSGFA 522

Query: 237 KNKVSSLTEYY--AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY--TKKQYFGTL 292
           +++V   +        D   + E   LL  ++    ++    + +              L
Sbjct: 523 RDEVIGKSSLELGLFTDYEQRLEMRRLLNEQQRVRNKKIVMRSKSGGLLYGLFSAELIRL 582

Query: 293 QNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
           Q         +   +  +      E +    
Sbjct: 583 QQRDLLLTVMVDITDRVNAEHALLEAKQAAE 613



 Score = 40.4 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/125 (14%), Positives = 36/125 (28%), Gaps = 3/125 (2%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151
            G   +++E   +  G    ++IG    ++      +    +  LL  Q     K  +  
Sbjct: 505 DGVYLDVNEAFLQQSGFARDEVIGKSSLELGLFTDYEQRLEMRRLLNEQQRVRNKKIVMR 564

Query: 152 -IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
              G  LY     +A  I  + R+        I      ++      +  +       E 
Sbjct: 565 SKSGGLLYGL--FSAELIRLQQRDLLLTVMVDITDRVNAEHALLEAKQAAESASRAKSEF 622

Query: 211 KKGHS 215
               S
Sbjct: 623 LANMS 627


>gi|254561704|ref|YP_003068799.1| histidine kinase [Methylobacterium extorquens DM4]
 gi|254268982|emb|CAX24943.1| putative histidine kinase with HK Homodimeric domain, ATPase domain
           and a sensory PAS domain [Methylobacterium extorquens
           DM4]
          Length = 842

 Score =  351 bits (901), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 176/781 (22%), Positives = 298/781 (38%), Gaps = 82/781 (10%)

Query: 34  FETEKSKKENPCHDS--FEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDA 91
           F++  +K + P  DS              +               +     +R  W  DA
Sbjct: 137 FDSGPAKADPPPADSGPDVAKPEVSSPSPAPE------------VETAELPLRVIWRSDA 184

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151
            G L  +S   P      A  + G     ++    I+    + + L  + T+     L  
Sbjct: 185 DGVLTHVSRTHPDL----AEALSGRSWAMLAADGVIEGA-ALTEALASRRTFRTLPLL-- 237

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
           + G      ++++  P      +FSGF GF I+   R     RA+    D   +   E  
Sbjct: 238 VRGRAFEHALEISGAPAGRSTDDFSGFGGFAILGERRARVMERAVEDEEDGPENLQEEAS 297

Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271
              ++ E                 +  + +   +         + E  P  +     +P 
Sbjct: 298 VDETAAESGLSVNEHAAFREVARVLGLRFAPDEDGDDAPPPPARVESAPSGSVMPFPIP- 356

Query: 272 QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI 331
                                                  LS           E ++  P+
Sbjct: 357 ------------------------------------QGRLSEAETRARLALTELLESLPL 380

Query: 332 PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR 391
              VY    + +A+ +FL LT Y  +  +  A GL+ L       D     PV   R + 
Sbjct: 381 GVLVYRGSEMLFASRTFLDLTGYADLPALRQA-GLAHLFRGLPPRDREITGPVPFARPEG 439

Query: 392 TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV 451
             +A       + W    +          A              +     I      +  
Sbjct: 440 GTVALLVDRAGLVWEGAQAEICLARAMPAAG-------------DIQLPAIPANAARLRA 486

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
            +   +L++  DG+  ++ EG ++  N + ++L     ++++   F       + S +  
Sbjct: 487 EK---VLDSLEDGVVTLDAEGRVVGLNPSAAELVHAHPKEVVGGRFADLFAPESLSALET 543

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK--- 568
            +T+       +               L LRI       +  Y  ++ +I +        
Sbjct: 544 AVTDSRRSGTSEVHGVTVRTGAA---ALRLRIARLLGEDAPGYCASLREIRDEDAAPPVP 600

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
                 ++  E E   K++ LARVS EIR  L AI+G ++++ + RF      R   Y  
Sbjct: 601 VAEPARRREPEAEGVWKANALARVSREIRPSLNAILGLTDMMLSDRFDRADAERLEAYLR 660

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            +  SG  +  +++DL D+++I++G+  L F  ++L+E V+  I+  Q  A   RI++RT
Sbjct: 661 EVRLSGGRIAALIDDLRDLAEIQAGRGKLTFADLALNELVASCIAAQQPQAARDRIVLRT 720

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748
           S A N+P + AD RS++Q AL +L NAI  T +GGQ+I+STT     EV LRVRDTG GM
Sbjct: 721 SLAPNLPAMKADERSIRQAALTVLGNAIRVTEAGGQVIVSTTLAEQGEVALRVRDTGTGM 780

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           T  EL  A++PFG         G+  G GL L KA+V+AN G+F I S   +GTL+E++F
Sbjct: 781 TEDELMSALEPFG-ADLGAVPEGDEKGFGLTLTKALVEANRGRFRISSRKDEGTLVEMLF 839

Query: 809 P 809
           P
Sbjct: 840 P 840


>gi|289432105|ref|YP_003461978.1| multi-sensor signal transduction histidine kinase [Dehalococcoides
            sp. GT]
 gi|288945825|gb|ADC73522.1| multi-sensor signal transduction histidine kinase [Dehalococcoides
            sp. GT]
          Length = 1062

 Score =  351 bits (901), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 111/763 (14%), Positives = 246/763 (32%), Gaps = 66/763 (8%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCD-VSDILHIDPNNHIGDLLKRQNT----W 143
            ++A   + +I++   + +G    +++G    +             +   +          
Sbjct: 326  LNADETISQINKRGCQILGYEYQEIVGQNWFEKFIPGYRRLIKRSMYKQIISGKADLPER 385

Query: 144  YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
            Y    L   +   + +     +  I +++ +       G               +  ++K
Sbjct: 386  YMDVILTKNDQEKVILW---HSTAIRNKDGQIVSILYSG--EDVTELKHTEEALRMSEEK 440

Query: 204  FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
            +  L E     +    +K  I         +  K++   L    A        E   ++ 
Sbjct: 441  YHTLFETMAQGAIYVNDKGTIIETNPAANAIFGKHESELLGTNIADPARTYVHEDGSIMP 500

Query: 264  SEESSLPEQEDFHTI------------NLNQYTKKQYFGTL-----QNNSKESFEYLSHR 306
              E+ +                     + +      +   L     +N+      +    
Sbjct: 501  PGENPVIVALKTGKAVRNVFMGIKNNRSDDIRWVNLFALPLFHINQENSYMVYTTFTDIS 560

Query: 307  NHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGG 365
               +        EN      +        +  +G +   N     +  Y   + +     
Sbjct: 561  RLKNARDALTRSENRYRSIFETAASIIISFDPNGIINDCNMRIEEILGYTPAEILGTN-- 618

Query: 366  LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
                                +   ++  I  +     +  +      +        ++  
Sbjct: 619  ----FLDIIEDSFREEIRKHIASLNQGDIIYNKDCRMLHKDG-QYRDVMVNCSTLIDEHG 673

Query: 426  ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL- 484
              + +  I  +    +     +     ++ S+    ++GI +++ +G I   N+ + K+ 
Sbjct: 674  IVLNEICIITDITQQKQTNYALIASEEKIRSMFNGVNEGIVVMDAKGYITEINQTMLKMN 733

Query: 485  FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
                 + ++ +    F+          YLT+   L+  + LE   L S   E    +   
Sbjct: 734  HCTSKDQLIGRHGLEFIAPKDREEARAYLTQADHLNEVRNLELRCLRSDGTEYFSQISGA 793

Query: 545  IKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
            + +          +   DI+E KQ + +L    ++A        +  + ++HEI  PLT 
Sbjct: 794  VLRGYAGEIQGIIILSVDITERKQMEQQLIMTDRMA-----SVGELASGLAHEINNPLTG 848

Query: 603  IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
            I+GFSE+               E    I R      +IV +LL  ++    +     E  
Sbjct: 849  IVGFSEL----LLMNELEESIKEDIQTIHREALRAAEIVRNLLTFAR----QHTPTREAS 900

Query: 663  SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA-----IH 717
             ++ +V + + L +       I   T    ++PR++ D   ++Q+ +NI+ NA     + 
Sbjct: 901  DINLSVHKVLELRKHDHRINNIRCLTDLDPDLPRVMLDFFQIQQVLINIIINAEFFLRLK 960

Query: 718  FTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
                  QI I T+   N  VI+ + D G G++   +++   PF          G+GTGLG
Sbjct: 961  ---DHPQITIKTS-QHNGYVIISISDNGPGISPENMKRIFDPFFTTK----EVGKGTGLG 1012

Query: 778  LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD--TSHPHD 818
            L +   +++ + GK  + ST   G    I  P  D   + P D
Sbjct: 1013 LSICHGIIEEHHGKISVESTLGNGATFRIELPFADIKPASPAD 1055



 Score = 68.1 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 19/159 (11%), Positives = 55/159 (34%), Gaps = 5/159 (3%)

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
                +    + +M+ E  +    L+     I ++N +  I   N+   ++ GY  ++I+
Sbjct: 292 IRHRQEIAKTETRMKEERDKAQLYLDIAGVIIVVLNADETISQINKRGCQILGYEYQEIV 351

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK---ITLGSTKEEKLLSLRIIIKKLPF 550
            + +          ++   + + +        E+   + L    +EK++       +   
Sbjct: 352 GQNWFEKFIPGYRRLIKRSMYKQIISGKADLPERYMDVILTKNDQEKVILWHSTAIRNKD 411

Query: 551 SSCYSLTM--HDISEWKQEKNKLSHAKKIAEKESSHKSD 587
               S+     D++E K  +  L  +++         + 
Sbjct: 412 GQIVSILYSGEDVTELKHTEEALRMSEEKYHTLFETMAQ 450


>gi|315182010|gb|ADT88923.1| signal transduction histidine kinase-like protein [Vibrio furnissii
           NCTC 11218]
          Length = 1268

 Score =  351 bits (901), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 132/672 (19%), Positives = 234/672 (34%), Gaps = 45/672 (6%)

Query: 168 IYSRNREFSGFRGFGIVH-VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFS 226
                 EF G RGFG++  +     D        ++   H         ++      +F 
Sbjct: 97  TRDYPLEFPGARGFGLIRFILPDQKDAFVAKAAAERPDQHY-----DIRTLTPHNDSLFL 151

Query: 227 QQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKK 286
            Q   P  R +  V       + + D              + +   +             
Sbjct: 152 IQYIEPENRNREAVGLDIGSESMRRDAALNAARYNEVRLTAPITLVQASKKTKQGFLILM 211

Query: 287 QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANP 346
             +      ++                  DE  +      D   +     ++G      P
Sbjct: 212 PIYQHNDVPARIDQRLQELAGWSYAPILIDEVLSSVSGLKDDVSLSIADVTNGAPQ---P 268

Query: 347 SFLLLTKYKSVD-------DIEIAGGLSTLLDAPKLSD--NNAIKPVMLYRSDRTCIAAS 397
            F   T              +        L       D         +      + +   
Sbjct: 269 FFSRGTNEADTPYQTQQIIWLFGRDWALNLTAKQSFVDSLPLPPNEYIYREILGSTLVIV 328

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
             + ++Q              E A    + + +   + E       +   +I  MQ  +I
Sbjct: 329 LIVFSLQLVTTRRAQAAKHEAELALATEQALKEANAKLEQQVAERTEAMAQINAMQ-RTI 387

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTE 515
           L +    I   + +GII   N +  KL GY   +++    P    L +   +       E
Sbjct: 388 LSSAGYAIIASDLDGIITVFNPSAEKLLGYTAAEMVGVCTPSRFHLMEEVATRAKQLSQE 447

Query: 516 ILSLDLRQTLEKITLGS------------TKEEKLLSLRIIIKKLPFSS----CYSLTMH 559
           +           +                 K    + +R+I+  L         Y    +
Sbjct: 448 LGETIHPGFDVFVAKARLGFVDITRWTYVHKNGHHIPIRLIVSCLLDDHQEPVGYLGIAY 507

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           D++E  Q + +L+ AK++AE+ +  KSDFLA +SHE+RTP+ AI+G  ++ +N       
Sbjct: 508 DLTETLQREKELAEAKELAEQANRAKSDFLANMSHELRTPMNAILGLLQIAQNTDL---- 563

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
           N +  +Y N    +   +L ++ND+LD SK+E+GKM +  +P SL E + E   L+    
Sbjct: 564 NKQQRDYLNKTQNAAQSLLVLLNDILDFSKVEAGKMEIEQQPFSLPELMHETGILLSSNL 623

Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEE- 736
             K + I      ++P  ++ D   ++QI LN+  NAI FT +G  ++ I T     +  
Sbjct: 624 QHKHLEIIYQIDEDVPTYLIGDSLRLRQILLNLAGNAIKFTEAGEVKVSIQTESHDGDRC 683

Query: 737 -VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            + + V DTG+GMT  +     + F Q  +S   R  GTGLGL + K +V    G   + 
Sbjct: 684 VLRITVSDTGIGMTEEQQRIVFQGFSQAESSISRRYGGTGLGLSIVKHLVGLMEGSVQVK 743

Query: 796 STPAKGTLIEII 807
           S    G+     
Sbjct: 744 SKQGVGSEFSFT 755



 Score = 43.1 bits (100), Expect = 0.21,   Method: Composition-based stats.
 Identities = 24/214 (11%), Positives = 56/214 (26%), Gaps = 26/214 (12%)

Query: 36  TEKSKKENPCH---DSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAH 92
            + +K E       +   +       Q+    T  +   N      +          D  
Sbjct: 342 AQAAKHEAELALATEQALKEANAKLEQQVAERTEAMAQINAMQRTILSSAGYAIIASDLD 401

Query: 93  GYLKEISEELPKTIGNYAFKMIG-------MRLCDVSDI---------LHIDPNNHIGDL 136
           G +   +    K +G  A +M+G         + +V+             I P   +   
Sbjct: 402 GIITVFNPSAEKLLGYTAAEMVGVCTPSRFHLMEEVATRAKQLSQELGETIHPGFDVFVA 461

Query: 137 LKRQNTWYGKTT--LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR 194
            K +  +   T        G ++ + + ++ L     ++E  G+ G  I +         
Sbjct: 462 -KARLGFVDITRWTYVHKNGHHIPIRLIVSCL--LDDHQEPVGYLG--IAYDLTETLQRE 516

Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228
                  +     +  K    +    +       
Sbjct: 517 KELAEAKELAEQANRAKSDFLANMSHELRTPMNA 550


>gi|49474041|ref|YP_032083.1| two-component sensor histidine kinase [Bartonella quintana str.
           Toulouse]
 gi|49239545|emb|CAF25902.1| Two-component sensor histidine kinase [Bartonella quintana str.
           Toulouse]
          Length = 773

 Score =  351 bits (901), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 121/506 (23%), Positives = 221/506 (43%), Gaps = 53/506 (10%)

Query: 342 FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401
            Y + +   +  Y   D +     ++ ++     +  +  + +M  +     I       
Sbjct: 285 VYWSRAMYEMLGYVPQDALLSISQITGIISPNDANFFDLAQELMSGKKKHIDINV----- 339

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
            ++    + + M         + P      GI  +  +      +     +++   +E  
Sbjct: 340 PMRHADGHYVWMRIRAEVTDEEEP---HLVGISFDISEQHQFAEETAQADLRIRDAIENI 396

Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
           S+   + + EG ++ +N    +    P + +        +E      +N Y  +      
Sbjct: 397 SESFVLWDSEGRLVMSNSKFCEYAAIPKQILQPGIQRETVEAMARPAINEYPLKDDGTG- 455

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK----------- 570
                  ++  T +   L +    ++            DISE KQ++ K           
Sbjct: 456 ----NLTSIRQTADGCWLKIN---ERRTQDGGLVCIGTDISELKQQQEKFEDSERRLFSF 508

Query: 571 ------------------------LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
                                   L   K+ AE  +  KS+FLA +SHE+RTPL AI+GF
Sbjct: 509 IQELKRARGNAQQRATEVEKLNKSLKAEKERAESANKAKSEFLANMSHELRTPLNAILGF 568

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
           S+++    FGPLG+ RY EY   I  SG+ +L ++ND+LD+SKIE+G+  +  + + L+ 
Sbjct: 569 SDIMLQSTFGPLGSKRYKEYMRDIYNSGSHLLTLINDILDMSKIEAGRFTVDCKNIDLEP 628

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726
            +SEA+  +   A EK I + T+ A  +     D R++KQI LN++SNA+ FTPSGG I 
Sbjct: 629 IISEALRTLIPQAQEKNIFVTTNIATKL-HAEVDGRAIKQIFLNLISNAVKFTPSGGNID 687

Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
           +         ++ +++DTGVG+    ++K  +PF Q+ N       G+GLGL +++++++
Sbjct: 688 V-CALKKKNNLVFKIKDTGVGIPQSAIKKLGQPFEQVENQLTKTYTGSGLGLAISRSLLE 746

Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLYD 812
            + GK  I S   KGT + I  P+  
Sbjct: 747 LHKGKLEIISKEMKGTTVTITIPIKQ 772


>gi|212639830|ref|YP_002316350.1| signal transduction histidine kinase [Anoxybacillus flavithermus
           WK1]
 gi|212561310|gb|ACJ34365.1| Signal transduction histidine kinase [Anoxybacillus flavithermus
           WK1]
          Length = 729

 Score =  351 bits (901), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 110/734 (14%), Positives = 248/734 (33%), Gaps = 73/734 (9%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG---DLLKRQNTWYGKTT 148
            G   +++E   +       +++     +    L++ P + +     +L++   +  +  
Sbjct: 49  DGTFVDVNEAACRLFRASKEQLLQKNFEE---YLYLVPEHIVRFQIQMLRKFKAYDDELI 105

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           +   +G   +V + +         + F+ +    ++                +  F  L 
Sbjct: 106 IRLADGEIKHVQLFM----RRYNEQPFNLY----MIRDITSKKVLERERTINETLFKDLF 157

Query: 209 EIKKGHSSVEKEKYDIFSQQSP--PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
                   +  E+                 K ++  L+       +     +  LLT + 
Sbjct: 158 NRAGDCIVIFDEQGRFIDANPSFCASVNVSKEELFKLSMQTFIPIEYYDVFEQLLLTLKR 217

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL-SAYFDEGENLTPET 325
           +     E    +        +   T   +S      + +              E      
Sbjct: 218 TGTVSSELPFILGDGMQKLFELTLTANVHSGFFMAIMRNVTEKRSMEMNLQRSEERFRAI 277

Query: 326 VDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDD--------IEIAGGLSTLLDAPKLS 376
            ++      +    GN+  ANP+     +    D         I+        +      
Sbjct: 278 FEQAHEAILICDDFGNILRANPAASRTFELPLHDLVHANLMQFIDGKNEKVRRVLRQFFR 337

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           D    + +  +  +               N                          I   
Sbjct: 338 DGEIREELTFHMPNGEKKQLEFTSKKGVING---------------------YHLTIFRN 376

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             + R  ++++  +  +  ++     DGI +++ E  I   N    ++F    E ++ K 
Sbjct: 377 VSERRKMEKQLREQEQKFRNVFNHAMDGIVLMDNEKRIFDANPVACRIFALSKEQLMEKR 436

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556
              F+  +       +L      +     +        + K++ L      +       +
Sbjct: 437 LHTFIGSSDLHKFQTWLNNGEEEEQFTITDGE-----GKTKIVELSFKPNIIEHVG--LM 489

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            + DI+E K+ + +L  +  ++           A ++HEIR P+TA+ GF ++++     
Sbjct: 490 MVRDITEKKEMEEQLRKSDTLSVV-----GQLAAGIAHEIRNPMTALKGFIQLLQGSIGN 544

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
                +Y  Y + I      +  I+ + L ++K ++    +H+E   + + + E + L+ 
Sbjct: 545 --DCEQYNMYFHVIMSELKRIESIITEFLVLAKPQA----VHYERGDVAKIMQETVDLLS 598

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
           + A    I I  ++   +P I  D + +KQ+ +NIL NAI   P GG I +S  H +   
Sbjct: 599 VQATMHNIQIEATYEP-VPPIYCDPKQLKQVFINILKNAIEVMPKGGTITVSVAHVAEG- 656

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           V + VRD G G+   +++K  +PF         +  GTGLGL ++  +++ + G+  + S
Sbjct: 657 VRIAVRDEGSGIPKDKIKKLGEPFYTT------KERGTGLGLMVSYKIIEEHQGRIDVES 710

Query: 797 TPAKGTLIEIIFPL 810
               GT   I  P+
Sbjct: 711 EVGVGTTFYITLPI 724



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 30/288 (10%), Positives = 72/288 (25%), Gaps = 24/288 (8%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
                  D   N+    + +       V   G     N +   L +  S + +       
Sbjct: 19  IQEKEAIDRRINMYDFILQQVTDAIVLVKDDGTFVDVNEAACRLFR-ASKEQLLQKNFEE 77

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
            L   P+         V           A      I+        +         ++ E 
Sbjct: 78  YLYLVPEH-------IVRFQIQMLRKFKAYDDELIIRLADGEIKHVQLF----MRRYNEQ 126

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
                +  +    ++ +R+  I       +     D I I + +G  +  N +       
Sbjct: 127 PFNLYMIRDITSKKVLERERTINETLFKDLFNRAGDCIVIFDEQGRFIDANPSFCASVNV 186

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
             E++ +     F+      V    L  +       +          +       + +  
Sbjct: 187 SKEELFKLSMQTFIPIEYYDVFEQLLLTLKRTGTVSS---ELPFILGDGMQKLFELTLTA 243

Query: 548 LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
              S  +   M +++E +  +  L  +++                +HE
Sbjct: 244 NVHSGFFMAIMRNVTEKRSMEMNLQRSEERFRAIFEQ--------AHE 283



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/368 (10%), Positives = 98/368 (26%), Gaps = 35/368 (9%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D  G   + +     ++     ++  + +     I + D    +   LKR  T   +   
Sbjct: 168 DEQGRFIDANPSFCASVNVSKEELFKLSMQTFIPIEYYDVFEQLLLTLKRTGTVSSELPF 227

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGF--GIVHVNRVDNDPRALGKRLDKKFSHL 207
              +G      + L A              GF   I+             +R +++F  +
Sbjct: 228 ILGDGMQKLFELTLTANVH----------SGFFMAIMRNVTEKRSMEMNLQRSEERFRAI 277

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKV-SSLTEYYAHKDDVLKTEKYPLLT 263
            E       +  +  +I            L + + V ++L ++   K++ ++        
Sbjct: 278 FEQAHEAILICDDFGNILRANPAASRTFELPLHDLVHANLMQFIDGKNEKVRRVLRQFFR 337

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
             E  + E+  FH  N  +   +        N      + +      +     E E    
Sbjct: 338 DGE--IREELTFHMPNGEKKQLEFTSKKGVINGYHLTIFRNVSERRKMEKQLREQEQKFR 395

Query: 324 ETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
              +       +  +   +F ANP    +        +E       L      SD +  +
Sbjct: 396 NVFNHAMDGIVLMDNEKRIFDANPVACRIFALSKEQLMEK-----RLHTFIGSSDLHKFQ 450

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             +    +      +        + E    +                   +  +  + + 
Sbjct: 451 TWLNNGEEEEQFTIT--------DGEGKTKIV---ELSFKPNIIEHVGLMMVRDITEKKE 499

Query: 443 NKRKMEIE 450
            + ++   
Sbjct: 500 MEEQLRKS 507


>gi|124007584|ref|ZP_01692289.1| sensory box histidine kinase/response regulator [Microscilla marina
           ATCC 23134]
 gi|123987067|gb|EAY26823.1| sensory box histidine kinase/response regulator [Microscilla marina
           ATCC 23134]
          Length = 1075

 Score =  351 bits (901), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 118/547 (21%), Positives = 211/547 (38%), Gaps = 52/547 (9%)

Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG--NLFYANPSFLLLTKYKSVDD 359
                +  +  A   + E       +K P P  +++     +   N + +    Y   D 
Sbjct: 298 VTDITHQKNAEARLKKSEQDHRLLFNKNPHPMLIFATDNLQILAVNDTMVEKYGYTKED- 356

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
                          L D    + +    ++        R      +      +  +   
Sbjct: 357 ----------FAQMSLRDLCWAEDIPCLEANLNQAKDVTRSRHCLKDG----TLINVDIS 402

Query: 420 KANQF-PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
             +        +  +  +  +    + ++++   +L ++L+    GI + + +  +   N
Sbjct: 403 GRDILYNNQAARLVLIQDVTEKLKAENELQLTSSRLKALLQNMQAGILLEDAQRKVALAN 462

Query: 479 RAVSKLFGYP--VEDILRKPFTVFLE-----QNTPSVMNHYLTEILSLDLRQTLEKI--T 529
                +F  P   E++       F E               + +IL+       E++   
Sbjct: 463 PVFCDMFDVPVPPEELKGLDCAPFAELSKGFFTNSDTFISVINDILTARNIVLGEELELV 522

Query: 530 LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
            G   E   + +    + L     +     D+S  K+ +  L  A+K AE+ S  K  FL
Sbjct: 523 DGRVYERDYIPVFSNEEYL----GHLWQYRDVSNKKKAQKVLIQARKKAEESSLAKERFL 578

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
           A +SHEIRTPL AIIG   ++           R   Y + I  S + +L I+ND+LDISK
Sbjct: 579 ANMSHEIRTPLNAIIGMQRLLSKTSL----EERQQRYLDAIGTSADNLLVIINDILDISK 634

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIA 708
           IE+GK+ L      L + +   +  +   A EK I +  +  +N+ P +L D   + QI 
Sbjct: 635 IEAGKLELENVGFDLCKLIRHLVFTLGYKAEEKGIGLYANIDDNMHPIVLGDSVRLHQIL 694

Query: 709 LNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIP 764
           LN+L+NAI FT  G ++IIST+          V   V DTG G+    +E   + F Q  
Sbjct: 695 LNLLNNAIKFTDVG-KVIISTSLVEANPDTQTVCFEVSDTGRGIKAENIEAVFESFTQED 753

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF-----------PLYDT 813
            S   +  G+GLGL + + +V+   GK  + S  +KGT                 P+++ 
Sbjct: 754 ASITRKFGGSGLGLAIGRQLVELFGGKLTVTSEYSKGTTFSFTLTFKKETLDAIAPVHEV 813

Query: 814 SHPHDCI 820
           +   + I
Sbjct: 814 TQEGEKI 820



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/144 (12%), Positives = 51/144 (35%), Gaps = 6/144 (4%)

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
               ++++  + M   +++E   DG+ I   E  I+  N  + +L GY + ++L +    
Sbjct: 178 RLKMEKQLHEKDMLYRTMVEKLQDGLIITTPESDIIFANPRMEELSGYKLSEMLHRKTYE 237

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYS 555
                   V+ +   ++      ++ +       K+       +        +       
Sbjct: 238 LFIAEDKQVLLN--EKLQGRREGRSDKYEIEQVRKDGTCWQSLVNATPYYNDANEMIGIM 295

Query: 556 LTMHDISEWKQEKNKLSHAKKIAE 579
             + DI+  K  + +L  +++   
Sbjct: 296 ALVTDITHQKNAEARLKKSEQDHR 319



 Score = 55.4 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/283 (9%), Positives = 67/283 (23%), Gaps = 17/283 (6%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ---NTWYGKT 147
               +   +  + +  G    +M+  +  ++      D    + + L+ +    +   + 
Sbjct: 208 PESDIIFANPRMEELSGYKLSEMLHRKTYELFIAE--DKQVLLNEKLQGRREGRSDKYEI 265

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                +GT     +   A P Y+   E  G     +V       +  A  K+ ++    L
Sbjct: 266 EQVRKDGTCWQSLV--NATPYYNDANEMIGIM--ALVTDITHQKNAEARLKKSEQDHRLL 321

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
                    +     D     +    +  K   +          D+   E  P L +  +
Sbjct: 322 FNKNPHPMLI--FATDNLQILAVNDTMVEKYGYTKEDFAQMSLRDLCWAEDIPCLEANLN 379

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL----SHRNHPSLSAYFDEGENLTP 323
              +         +                     L                    +   
Sbjct: 380 QAKDVTRSRHCLKDGTLINVDISGRDILYNNQAARLVLIQDVTEKLKAENELQLTSSRLK 439

Query: 324 ETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYK-SVDDIEIAG 364
             +        +      +  ANP F  +       ++++   
Sbjct: 440 ALLQNMQAGILLEDAQRKVALANPVFCDMFDVPVPPEELKGLD 482


>gi|283851902|ref|ZP_06369178.1| signal transduction histidine kinase with CheB and CheR activity
            [Desulfovibrio sp. FW1012B]
 gi|283572626|gb|EFC20610.1| signal transduction histidine kinase with CheB and CheR activity
            [Desulfovibrio sp. FW1012B]
          Length = 1507

 Score =  351 bits (901), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 104/557 (18%), Positives = 215/557 (38%), Gaps = 38/557 (6%)

Query: 271  EQEDFHTINLNQYTKKQYFGTLQNNS-KESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
            E++     +    T+   + ++ +        ++   +  +      +            
Sbjct: 831  ERQLVGQADQRILTRVIPYRSINDRIDGVVLTFMDVTSAVAAEKRLSQQTEELETLYKTI 890

Query: 330  PIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388
            P  +F V   G +   N              +      S +            + +   R
Sbjct: 891  PDIYFKVAPDGTIL--NCRSTHQPDIIPDATLVAGKHFSEIFGPE--HGATLEEALQEAR 946

Query: 389  SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
                  +             N+  +       A +         +  +    +  + ++ 
Sbjct: 947  EADAQRSLDLHFVA----HGNNRHLEVRIVPVAAET------FVVMRDMTGLKQAEDRLR 996

Query: 449  IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
             +      +L   SD +  ++  G I+  N    ++   P E  + +P   F        
Sbjct: 997  FQAD----VLSQVSDALIAVDEAGSIILWNPGAERILEIPAERAMGQPLEAFTGIKWIMA 1052

Query: 509  MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEW 564
             +         + RQ   K    +  +   + +   +  L  +          + D+S+ 
Sbjct: 1053 DDAAADR---PEDRQLWIKEFDHARADGSHIVVESSVSVLRDTRGNRIGLLAILRDVSDN 1109

Query: 565  KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
            K+   +L  AK+ AE+ +  KS+FLA +SHEIRTP+  I+G +++  N+           
Sbjct: 1110 KRFAKELLEAKQKAERANRTKSEFLANMSHEIRTPMNGILGMTQLALNRDL----PDDVR 1165

Query: 625  EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
            E+   + +SG  +LDI+ND+LD+SKIE+G++ L  +P  L E V   +  + L A +K +
Sbjct: 1166 EFLQLVHQSGQSLLDIINDILDLSKIEAGRVVLEQKPFDLVEMVESTLKPLGLLARDKGL 1225

Query: 685  LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS-----NEEVI 738
                S A  +P  ++ D   ++QI  N++ NAI FT  G ++ +              ++
Sbjct: 1226 TFLFSIAPGVPDRVIGDKGRLRQILTNMVGNAIKFTKRG-RVEVKVRLAEIQEPGRASLL 1284

Query: 739  LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
              ++D G+G+++ ++    + F QI +S  ++  GTGLGL ++KA+V+   G   + S  
Sbjct: 1285 FLIKDEGIGISSAQIHSIFEKFEQIASSAHVQYGGTGLGLAISKALVEMMGGVIQVESEL 1344

Query: 799  AKGTLIEIIFPLYDTSH 815
             +G+    +  L   + 
Sbjct: 1345 HRGSTFSFVLTLEKVAE 1361


>gi|73748079|ref|YP_307318.1| sensor histidine kinase [Dehalococcoides sp. CBDB1]
 gi|73659795|emb|CAI82402.1| sensor histidine kinase [Dehalococcoides sp. CBDB1]
          Length = 1062

 Score =  351 bits (900), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 111/761 (14%), Positives = 246/761 (32%), Gaps = 62/761 (8%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCD-VSDILHIDPNNHIGDLLKRQ--NTWYG 145
            ++A   + +I++   + +G    +++G    +             +   +     +    
Sbjct: 326  LNADETISQINKRGCQILGYEYQEIVGQNWFEKFIPGYRRLIKRSMYKQIISGKADLPER 385

Query: 146  KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
               +   +     V I   +  I +++ +       G               +  ++K+ 
Sbjct: 386  YMDVILTKNDQEKV-ILWHSTAIRNKDGQIVSILYSG--EDVTELKHTEEALRMSEEKYH 442

Query: 206  HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
             L E     +    +K  I         +  K++   L    A        E   ++   
Sbjct: 443  TLFETMAQGAIYVNDKGTIIETNPAANAIFGKHESELLGTNIADPARTYVHEDGSIMPPG 502

Query: 266  ESSLPEQEDFHTI------------NLNQYTKKQYFGTL-----QNNSKESFEYLSHRNH 308
            E+ +                     + +      +   L     +N+      +      
Sbjct: 503  ENPVIVALKTGKAVRNVFMGIKNNRSDDIRWVNLFALPLFHINQENSYMVYTTFTDISRL 562

Query: 309  PSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
             +        EN      +        +  +G +   N     +  Y   + +       
Sbjct: 563  KNARDALTRSENRYRSIFETAASIIISFDPNGIINDCNMRIEEILGYTPAEILGTN---- 618

Query: 368  TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
                              +   ++  I  +     +  +      +        ++    
Sbjct: 619  --FLDIIEDSFREEIRKHIASLNQGDIIYNKDCRMLHKDG-QYRDVMVNCSTLIDEHGIV 675

Query: 428  MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL-FG 486
            + +  I  +    +     +     ++ S+    ++GI +++ +G I   N+ + K+   
Sbjct: 676  LNEICIITDITQQKQTNYALIASEEKIRSMFNGVNEGIVVMDAKGYITEINQTMLKMNHC 735

Query: 487  YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
               + ++ +    F+          YLT+   L+  + LE   L S   E    +   + 
Sbjct: 736  TSKDQLIGRHGLEFIAPKDREEARAYLTQADHLNEVRNLELRCLRSDGTEYFSQISGAVL 795

Query: 547  KLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
            +          +   DI+E KQ + +L    ++A        +  + ++HEI  PLT I+
Sbjct: 796  RGYAGEIQGIIILSVDITERKQMEQQLIMTDRMA-----SVGELASGLAHEINNPLTGIV 850

Query: 605  GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
            GFSE+               E    I R      +IV +LL  ++    +     E   +
Sbjct: 851  GFSEL----LLMNELEESIKEDIQTIHREALRAAEIVRNLLTFAR----QHTPTREAGDI 902

Query: 665  DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA-----IHFT 719
            + +V + + L +       I   T    ++PR++ D   ++Q+ +NI+ NA     +   
Sbjct: 903  NLSVHKVLELRKHDHRINNIRCLTDLDPDLPRVMLDFFQIQQVLINIIINAEFFLRLK-- 960

Query: 720  PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
                QI I T+   N  VI+ + D G G++   +++   PF          G+GTGLGL 
Sbjct: 961  -DHPQITIKTS-QHNGYVIISISDNGPGISPENMKRIFDPFFTTK----EVGKGTGLGLS 1014

Query: 780  LAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD--TSHPHD 818
            +   +++ + GK  + ST   G    I  P  D   + P D
Sbjct: 1015 ICHGIIEEHHGKISVESTLGNGATFRIELPFADIKPASPAD 1055



 Score = 68.1 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 19/159 (11%), Positives = 55/159 (34%), Gaps = 5/159 (3%)

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
                +    + +M+ E  +    L+     I ++N +  I   N+   ++ GY  ++I+
Sbjct: 292 IRHRQEIAKTETRMKEERDKAQLYLDIAGVIIVVLNADETISQINKRGCQILGYEYQEIV 351

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK---ITLGSTKEEKLLSLRIIIKKLPF 550
            + +          ++   + + +        E+   + L    +EK++       +   
Sbjct: 352 GQNWFEKFIPGYRRLIKRSMYKQIISGKADLPERYMDVILTKNDQEKVILWHSTAIRNKD 411

Query: 551 SSCYSLTM--HDISEWKQEKNKLSHAKKIAEKESSHKSD 587
               S+     D++E K  +  L  +++         + 
Sbjct: 412 GQIVSILYSGEDVTELKHTEEALRMSEEKYHTLFETMAQ 450


>gi|303240370|ref|ZP_07326888.1| PAS/PAC sensor hybrid histidine kinase [Acetivibrio cellulolyticus
           CD2]
 gi|302592097|gb|EFL61827.1| PAS/PAC sensor hybrid histidine kinase [Acetivibrio cellulolyticus
           CD2]
          Length = 850

 Score =  351 bits (900), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 112/574 (19%), Positives = 217/574 (37%), Gaps = 37/574 (6%)

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE--- 317
           + + EE  L +       +L+ +        ++N        +      S     ++   
Sbjct: 29  MKSGEEKGLIKDTVLVKKDLSIFFISAKISPVKNEENIICGMVIVFRDISRLRSIEDKLS 88

Query: 318 -GENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
             E       +  P+   V      +   N S L + + +  + I    G         +
Sbjct: 89  FEEKKFKTIYETAPVGMLVVDEKLIIRDINKSMLNIIEKEIDECIGRRFGDGIGCINSFI 148

Query: 376 S-------------DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
           +                 +      R++       A    I  N +  L    I     +
Sbjct: 149 ANGCGKSEKCFECLTAETLTDFFRNRTEFVDFEVEAE---ILLNGKPVLKWFKIYVTNTD 205

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
               N     I+ +  + ++ +  +        S+ +     I            N    
Sbjct: 206 IVGLNDCLLVID-DITEKKLMEDAIIRSRDYYISLFDNFPALIWRTGVGSKCDYFNNNWL 264

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
              G  +E  L   +T  +  +          +  +      L+        +     +R
Sbjct: 265 AFTGRSIEQELGAGWTEGIHHDDLKKCKDVFWDSFNKRGA--LQVEFRLRYNDGSYHWVR 322

Query: 543 IIIKKLPF----SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
            I   +       + Y   + DISE K    +L+ +K+ AE  +  KS FLA +SHEIRT
Sbjct: 323 NIGHPIYDLKGEFAGYIGAVFDISEHKSMMEELNKSKEEAEAANKAKSQFLANMSHEIRT 382

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
           PL  ++G    + +       N    +         + +L ++N++LD SKIE+GK+ L 
Sbjct: 383 PLNGMVG----MIDLTLMSDLNNEQRDNLETAKSCVDSLLKLINEILDFSKIEAGKLELV 438

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIH 717
                L++ + + +   ++ A E  +++  S ++++P  I+ D   +KQ+  N+LSNA+ 
Sbjct: 439 NSSFRLEDLLEQTVKPYKIKAKEHNVMVDYSISSDLPEYIIGDQLRIKQVLNNLLSNALK 498

Query: 718 FTPSGG---QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           FT +G    ++ I+T   ++E ++  V DTGVG+ + ++EK  K F Q+ NS   +  GT
Sbjct: 499 FTEAGSINLKVDINT-IDNDEFILFEVSDTGVGIADEDMEKLFKSFSQVDNSYTRKYNGT 557

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           GLGL ++K +++   G  +I S    G+      
Sbjct: 558 GLGLAISKRLIEKMGGSIWIKSEKGIGSTFSFTI 591



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/142 (11%), Positives = 37/142 (26%), Gaps = 5/142 (3%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTW 143
             W           +       G    + +G    +      +    +   D   ++   
Sbjct: 246 LIWRTGVGSKCDYFNNNWLAFTGRSIEQELGAGWTEGIHHDDLKKCKDVFWDSFNKRGAL 305

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +  L   +G+  Y  +     PIY    EF+G+   G V              +  ++
Sbjct: 306 QVEFRLRYNDGS--YHWVRNIGHPIYDLKGEFAGY--IGAVFDISEHKSMMEELNKSKEE 361

Query: 204 FSHLHEIKKGHSSVEKEKYDIF 225
               ++ K    +    +    
Sbjct: 362 AEAANKAKSQFLANMSHEIRTP 383


>gi|316934884|ref|YP_004109866.1| PAS/PAC sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris DX-1]
 gi|315602598|gb|ADU45133.1| PAS/PAC sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris DX-1]
          Length = 769

 Score =  351 bits (900), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 138/685 (20%), Positives = 265/685 (38%), Gaps = 71/685 (10%)

Query: 181 FGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV 240
            G+V ++R  +    L   L             H  V      I ++        + N+ 
Sbjct: 90  IGVVRLDRPASI-ERLQNLLPALIPSWGIAAGRHVIVTSADQRILARVPIGGAPAVDNRF 148

Query: 241 SSLTEYYAHKDDVLKTEKYPL-LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
             +    A      +     + L    S+L       ++       ++  G++  +    
Sbjct: 149 FEVLGAAALTKAGQQGGIVEIVLPGGASALATMHVVKSLPGQVVIVQEDTGSVLRSDTAL 208

Query: 300 FEYL-----------------SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH--GN 340
              L                             D   +     +++     + +    G 
Sbjct: 209 QVTLSATTGFVVLILGFAFHWQSTRAREGDLINDAVRSRIDTALNRGRCGLWDWDLSRGR 268

Query: 341 LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400
           + + + S   +   +S +D+   G ++ L+    +        ++  R D    +   R 
Sbjct: 269 I-FWSQSMFTILGLESRNDLLTFGEVNALVKGEDIDLFEIADELVAGRVDHIDRSFQMRH 327

Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
               W     + +             +    GI  +  + +    +     ++L   +E 
Sbjct: 328 AQGHW-----IWLRMRCELSQEAGSADKHLIGIAVDITEQKSLAERSVEADLRLRDAIET 382

Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDI-LRKPFTVFLEQNTPSVMNHYLTEILSL 519
             +   + + E  ++  N    +L   P   +     +   LE      +    T +   
Sbjct: 383 IPEAFVLWDAENRLVLCNSHFQRLHKLPDSAVSPGTSYETILEVGRMPQLR---TRLCDN 439

Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA----- 574
                  +       + K L +    ++      Y     DI+  K  + KL        
Sbjct: 440 GGVAPGARTFEAQLDDGKWLHIS---ERRTKDGGYVAVGTDITRIKAHEQKLVDNDLRLR 496

Query: 575 ------------------------------KKIAEKESSHKSDFLARVSHEIRTPLTAII 604
                                         K+ AE+ +  KS FLA +SHE+RTPL AII
Sbjct: 497 ATVADLKITQTKLEKQAHQLADLARKYGDEKRRAEEANQTKSKFLANMSHELRTPLNAII 556

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           GFSE++ +  FG LG+ +Y EY + I  SG+ +L+++ND+LD+SKIE+G+M L  EP+ L
Sbjct: 557 GFSEIMGSGMFGTLGSEKYQEYCHDIMTSGHYLLEVINDILDMSKIEAGRMRLEMEPLDL 616

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724
            + + E++ +V   A  K + +R    + IP I+AD R++KQI +N+LSNA+ FTP  G+
Sbjct: 617 SKTIGESLKVVAGRAEHKHLDLRAEVGDQIP-IVADRRAIKQILINLLSNAVKFTPDAGR 675

Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
           + + +   + + ++L + DTG+G+    L +  +PF Q+ +       G+GLGL +AK++
Sbjct: 676 VTVRSRI-AGDSIVLMIADTGIGIPPQSLRRLGQPFEQVESQLTKSYHGSGLGLAIAKSL 734

Query: 785 VDANMGKFYIFSTPAKGTLIEIIFP 809
           V+ + G   + ST  +GT++ +  P
Sbjct: 735 VNLHGGSMRLRSTLGEGTVVMVSLP 759


>gi|118581557|ref|YP_902807.1| multi-sensor signal transduction histidine kinase [Pelobacter
           propionicus DSM 2379]
 gi|118504267|gb|ABL00750.1| PAS/PAC sensor signal transduction histidine kinase [Pelobacter
           propionicus DSM 2379]
          Length = 587

 Score =  351 bits (900), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 105/567 (18%), Positives = 208/567 (36%), Gaps = 37/567 (6%)

Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN-- 307
               L                  E   +    + T     G ++ +S  S   LSH    
Sbjct: 44  SQTRLAKLLAEQERDTMPPQQLAERIGSAIKARVTLIDRSGLVRGDSDVSKVELSHLENH 103

Query: 308 --HPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365
              P +      G   +    +         + G  + +N  +  +     ++ +  A  
Sbjct: 104 LKRPEVVQAMQGGIGSSLRYSETLKTDMLYTALG--YESNGHYGFIRLSLPLERLSSATA 161

Query: 366 LSTLL----DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
               +        L    A   ++   + R     +     I  + E S      P    
Sbjct: 162 ALHRMTAGSVGMALLAALAFSLLLSRVTSRPLREMAEVAARIGRDGEYSRI----PVASQ 217

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
           ++            E +D ++    ++ E  +L +IL    +G+ + + +G I   N A 
Sbjct: 218 DEIGALASVLNDMAERIDAQM--HGLDAEKTRLDAILRGMGEGVMVASADGAITLVNPAF 275

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
            K+F        +K   V    +  +  +              L +       +  LL+ 
Sbjct: 276 RKMFAMTDGVEGKKLIEVCRNPDLQAAFHDL------ARCGGELSREIRIQPGDVTLLTH 329

Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
            + +             HDI++ K  +                + DF+A VSHE+RTP++
Sbjct: 330 WVPLAMDGAGQGVVAVFHDITDMKHVEE--------------MRRDFVANVSHELRTPVS 375

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
            I G++E +               +   I R    +  ++ND+L +S +E+    L    
Sbjct: 376 VIKGYAETLMQNDMLVSEPEHATRFVEIIRRHAERLTTLINDILTLSCLEARNSALELNA 435

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           + +   ++++ +L+   A EK+I +     NN+PR L D   ++Q+ +N++ NA+ +TP 
Sbjct: 436 MDVGTTIAKSCALLAPRAAEKKICLHNEVGNNLPRTLVDQGRLEQVLVNLIDNAVKYTPE 495

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           GG I +         + + V+D+G+G+   +L +  + F ++   +     GTGLGL +A
Sbjct: 496 GGTIRLFAE-QGETFLRISVQDSGIGIPPRDLPRIFERFYRVDEGRSREQGGTGLGLAIA 554

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIF 808
           K +V  + G+  + STP KG+      
Sbjct: 555 KHIVQLHGGELTVTSTPGKGSTFSFTL 581


>gi|298491263|ref|YP_003721440.1| signal transduction histidine kinase with CheB and CheR activity
            ['Nostoc azollae' 0708]
 gi|298233181|gb|ADI64317.1| signal transduction histidine kinase with CheB and CheR activity
            ['Nostoc azollae' 0708]
          Length = 1407

 Score =  351 bits (900), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 116/584 (19%), Positives = 230/584 (39%), Gaps = 31/584 (5%)

Query: 238  NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297
            ++++S  +Y     +  +     L  + E  L   E+ H+ N    T K+          
Sbjct: 680  HELTSTKDYLQSIIEEQQASNQDLRAANEEILSSNEELHSTNEELETAKEEIQATNEELN 739

Query: 298  ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSV 357
               + L  RN  +     D     +   +        V S   +   N +  ++      
Sbjct: 740  SINDELQRRNIEATLVSNDLQNLFSSINISIL----MVGSDLKIRCFNIAAEIIFNLIPT 795

Query: 358  DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
            D       +   L  P L               +                 +   +   P
Sbjct: 796  DKGRPLSNIKHKLKVPNLEAKIVEVISTSNLKTQEVQDL----------DGHWYDLRIRP 845

Query: 418  FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
            +   +   +      I  +  D R N   ++       +I+    + + +++ +  +++ 
Sbjct: 846  YRTIDNKID--GAVVILVDIDDIRRNANILKSFREYAAAIVSTVRESLVVMDVDLKVVTA 903

Query: 478  NRAVSKLFGYPVEDILRKPFTVFLEQNTP-SVMNHYLTEIL-SLDLRQTLEKITLGSTKE 535
            N+   + F    ++   +      +       +   L + +      Q +E         
Sbjct: 904  NQFFYEAFQVGAKETENRLIYEIGDGQWNIPQLRSLLEDTIPQQGQFQDVEIEHDFEQIG 963

Query: 536  EKLLSLRII-IKKLPFSSCYSLTMHDISEWKQEKNKLSH-------AKKIAEKESSHKSD 587
             K++ L    I ++  +    L + DI++ KQ + + +        A+  AE  +  K +
Sbjct: 964  HKIMRLNGRKITQIGDTPMIILVIEDITQRKQLEAERTQLLAQEQSARTAAETANCAKDE 1023

Query: 588  FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
            FL+ +SHE+R PL  ++G++++++ Q+   L   +  +    I+RS      ++ DLLDI
Sbjct: 1024 FLSVLSHELRNPLNCLLGWTQLLRKQQ---LDEAKTNQALEAIERSAKAQHQLIGDLLDI 1080

Query: 648  SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707
            S+I  G+M L  +PV L   +  AI +VQL A+ K I I++   +    ++ D   ++Q+
Sbjct: 1081 SRISVGQMRLEAQPVKLIPVIEAAIDVVQLAADAKNIQIQSRLDSAGRTLVGDQIRLQQV 1140

Query: 708  ALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
              N+LSN+I FTP GG+I I+  ++  +   ++VRDTGVG++   L      F Q   S 
Sbjct: 1141 IWNLLSNSIKFTPVGGRIDITLDYSPFQG-EIQVRDTGVGISADFLPYIFDRFRQADRSP 1199

Query: 768  QIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFPL 810
                 G GLGL + + +V+ + G   + S    +G    +  PL
Sbjct: 1200 TRSNTGLGLGLSIVRHLVELHGGTVEVTSPGEGQGATFTVRLPL 1243


>gi|317154768|ref|YP_004122816.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316945019|gb|ADU64070.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 1521

 Score =  351 bits (900), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 117/741 (15%), Positives = 244/741 (32%), Gaps = 39/741 (5%)

Query: 86   TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH---IGDLLKRQNT 142
             +     G    ++  L +  G  + +     + D++   + DP +    +  L++    
Sbjct: 655  LYQSTPQGRFVSVNPALVRLTGYDSPQEFMDAITDITTQFYYDPKDRDRLVQALIQHGEV 714

Query: 143  WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
               +  +    G    + + + +        E   F G  I              +    
Sbjct: 715  RQFEILIRRKGGGT--LWVSINSRLSRGLGNEPELFEGSII--DITGRKRVEEALRLTQF 770

Query: 203  KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
                       +      +Y   +          ++ + ++T           T      
Sbjct: 771  SVDMAP--VSIYWIDRSGRYVYVNDHGCSSLGYGQDDLLAMTVSDICPLFSPDTWAEYWN 828

Query: 263  TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
                  +   E  H     +    +     +    + +    +    +     ++    +
Sbjct: 829  ARRLEDIRRFETVHRCRDGRELPVEIVSHYKVYGGKEY-LFVYAYDLTERHQAEQALRWS 887

Query: 323  PETVDKCP----IPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
             E +++         + +       +       L   +       A  +  +L+    S 
Sbjct: 888  RELLNEVQRISLTGGWEHDLDTGANHWTDGQFRLFGLEPD---GSAPDIGHILNRHIHSG 944

Query: 378  NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
            +            R           ++ +    + +      + +         G   + 
Sbjct: 945  DTPRLVEAWTSLLRDMRPVEVEFRCLRDDGSQGVLVGV-AIPETDGRGRLRRVFGSTRDV 1003

Query: 438  VDTRINKRKMEIEVMQLCSILEATSDGIAI--INREGIILSTNRAVSKLFGYPVEDILRK 495
               R   R++     +L +IL+     I +  ++    +L  N  + + +G   +D L  
Sbjct: 1004 TQERQAARELAQSHERLLTILDGIDANIYVSELDSH-EVLFMNAHIQETYGTSGQDSLCH 1062

Query: 496  PFTVFLEQNTPSVMNHYLTEILSLDLR--QTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553
                 L   +          +L+       TL +           L+    I+ L     
Sbjct: 1063 EI---LRGESRQCQVCPKPALLNGRGAPVGTLVREWHSQITGRWYLNHDRAIEWLEGRLV 1119

Query: 554  YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
            +     DI++ K  + +L  A   AE  S  K++FLA +SHEIRTP    +     +   
Sbjct: 1120 HMHMATDITDLKVMEQELKRAMAKAEAASLAKNEFLANMSHEIRTP----LNGLLGMLQL 1175

Query: 614  RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
                +      E+      SG  +L I+ND+LDISKIESGK+ L  + + L E     ++
Sbjct: 1176 LQLTILGGEQREFLEIALSSGRSLLQILNDILDISKIESGKLELDDQELDLGEVAESVVA 1235

Query: 674  LVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH- 731
            + +  A  + I +       +PR  LAD   ++QI  N++ NA  FT SG  +++     
Sbjct: 1236 VFRHQARMRGIEVALVMDKTLPRHFLADKVRLRQILFNLVGNATKFTESGS-VLVEAYPL 1294

Query: 732  -----TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
                     ++   V DTG+G+ + ++++   PF Q+  S   + +GTGLGL + + +V 
Sbjct: 1295 AHPMPDGRAQLFFSVSDTGIGIPDDKMDQIFDPFTQVDGSFTRKYQGTGLGLGIVRRLVA 1354

Query: 787  ANMGKFYIFSTPAKGTLIEII 807
               G   + S    GT +   
Sbjct: 1355 LMGGTIAVDSELGAGTTVVFT 1375



 Score =  200 bits (509), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 55/504 (10%), Positives = 135/504 (26%), Gaps = 27/504 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI----LHIDPNNHIGDLLKRQN 141
            W +D       +S  + +  G     ++G  +          L ++  + +   + R  
Sbjct: 153 VWTVDNDLRYTYVSPSVGRLRGIVPEDVVGRCVDQFVTPQTLPLVLEALDGVRRAVARGE 212

Query: 142 TWYGKTTLWPIE-GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
                     ++      V ++  A P+        GF   G         +     +R 
Sbjct: 213 RSPLARMELEVQHADGSAVWVEAVARPLLDHAGACVGF--IGSTRSIGDRREVEQRLRRN 270

Query: 201 DKKFSHLHEIKKGHSSV--EKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
           ++    L +       +        I +            + + L+ +     + +++ +
Sbjct: 271 ERALRALLDATVEDVGLYGTDGTISIINGNMAARLDLDPEEAAGLSLFDHLPQERVESWR 330

Query: 259 YPLLTSEESSLPEQEDFHTINL-NQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
                  ++  P     H        T    FG        +                 E
Sbjct: 331 ESFRQVAQTGRPVSRKGHLKGRHFDLTLYPVFGQDGEVDGVAIFAKDTTERTRAEEALRE 390

Query: 318 GENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
            E      ++            G + +AN + +    +   D I            P L 
Sbjct: 391 SEARYRRMLETANEGILSMDADGRIAFANQTMVDFMGHDFEDIIGATL--------PDLM 442

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
             +     +                 ++ +                   E      +  +
Sbjct: 443 PPDEHSEYVRRAQAIKSGGVRYEQRFVRRDGTR-TWGRVSATPIRTDVGEYAGAFVMIAD 501

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             + ++ +R +     +   I+E  ++GI  I   G I   N+ + ++ GY V ++L KP
Sbjct: 502 ITEAKMVERSLRESEARYRRIVETANEGIISIGPNGNIRFANKVLCRMLGYAVYELLGKP 561

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---- 552
            +  L       +  +L          + +       K+   +   +    +        
Sbjct: 562 VSALLYPEDIPRLEEHLVRRRQG---LSDQFEQRYRCKDGSSVWALVSASPILGDDGRYQ 618

Query: 553 CYSLTMHDISEWKQEKNKLSHAKK 576
                  DIS  K+ + +L  +++
Sbjct: 619 GVLAMAADISGRKRAEAELVRSER 642



 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 54/545 (9%), Positives = 139/545 (25%), Gaps = 46/545 (8%)

Query: 52  SNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAF 111
            +    +  +     +  +   F   P+P        +D  G +  ++      +G    
Sbjct: 7   KSEAANHGRATDPAAHGPAGPYFDLVPLPCHC-----LDDQGRIVAVNRAWLALLGFSRE 61

Query: 112 KMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT-LWPIEGTNLYVPIDLAALPIYS 170
           +  G  L D            +       +        +   +G  + V  +     I  
Sbjct: 62  EATGRPLDDFLA-----GPPQVWAA-DGSSPESPVCLTMLGRDGCAVEVRAE-----IRR 110

Query: 171 RNREFSGF--------RGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKY 222
            +   +GF        +G         D     L     +      +    ++ V     
Sbjct: 111 PDGAGAGFSLAHFLYPQGEADARTVAGDARIHRLVAENTEDVVWTVDNDLRYTYVSPSVG 170

Query: 223 DIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQ 282
            +          R  ++  +        + +    +             + +    + + 
Sbjct: 171 RLRGIVPEDVVGRCVDQFVTPQTLPLVLEALDGVRRAVARGERSPLARMELEVQHADGSA 230

Query: 283 YTKKQYFGTLQNNSKE----SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY-S 337
              +     L +++           S  +   +       E      +D       +Y +
Sbjct: 231 VWVEAVARPLLDHAGACVGFIGSTRSIGDRREVEQRLRRNERALRALLDATVEDVGLYGT 290

Query: 338 HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397
            G +   N +          +      GLS     P+    +  +           ++  
Sbjct: 291 DGTISIINGNMAARLDLDPEEA----AGLSLFDHLPQERVESWRESFRQVAQTGRPVSRK 346

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
             L    ++           +    Q  E         +  +    +  +     +   +
Sbjct: 347 GHLKGRHFD--------LTLYPVFGQDGEVDGVAIFAKDTTERTRAEEALRESEARYRRM 398

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
           LE  ++GI  ++ +G I   N+ +    G+  EDI+       +  +  S        I 
Sbjct: 399 LETANEGILSMDADGRIAFANQTMVDFMGHDFEDIIGATLPDLMPPDEHSEYVRRAQAIK 458

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAK 575
           S  +R   E+  +          +     +          + + DI+E K  +  L  ++
Sbjct: 459 SGGVR--YEQRFVRRDGTRTWGRVSATPIRTDVGEYAGAFVMIADITEAKMVERSLRESE 516

Query: 576 KIAEK 580
               +
Sbjct: 517 ARYRR 521



 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 51/504 (10%), Positives = 129/504 (25%), Gaps = 33/504 (6%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLW 150
            G +  I+  +   +     +  G+ L D      ++        + +       K    
Sbjct: 291 DGTISIINGNMAARLDLDPEEAAGLSLFDHLPQERVESWRESFRQVAQTGRPVSRK---- 346

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
              G       DL   P++ ++ E  G   F                +  + ++  + E 
Sbjct: 347 ---GHLKGRHFDLTLYPVFGQDGEVDGVAIFA--KDTTERTRAEEALRESEARYRRMLET 401

Query: 211 KKGHSSVEKEKYDIFSQQSP--PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
                        I                 +   T       D            +   
Sbjct: 402 ANEGILSMDADGRIAFANQTMVDFMGHDFEDIIGATLPDLMPPDEHSEYVRRAQAIKSGG 461

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL----SAYFDEGENLTPE 324
           +  ++ F   +  +   +     ++ +  E           +          E E     
Sbjct: 462 VRYEQRFVRRDGTRTWGRVSATPIRTDVGEYAGAFVMIADITEAKMVERSLRESEARYRR 521

Query: 325 TVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
            V+        +  +GN+ +AN     +  Y   + +     +S LL    +     ++ 
Sbjct: 522 IVETANEGIISIGPNGNIRFANKVLCRMLGYAVYELLGKP--VSALLYPEDIPR---LEE 576

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
            ++ R               +    +S+                     +  +    +  
Sbjct: 577 HLVRRRQGLSDQFE---QRYRCKDGSSVWALVSASPILGDDGRYQGVLAMAADISGRKRA 633

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE- 502
           + ++        ++ E + +G+     +G  +S N A+ +L GY          T     
Sbjct: 634 EAELVRSERNYRNLFENSVEGLYQSTPQGRFVSVNPALVRLTGYDSPQEFMDAITDITTQ 693

Query: 503 -QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI----IIKKLPFSSCYSLT 557
               P   +  +  ++     +  +   L   K    L + I              +  +
Sbjct: 694 FYYDPKDRDRLVQALIQHG--EVRQFEILIRRKGGGTLWVSINSRLSRGLGNEPELFEGS 751

Query: 558 MHDISEWKQEKNKLSHAKKIAEKE 581
           + DI+  K+ +  L   +   +  
Sbjct: 752 IIDITGRKRVEEALRLTQFSVDMA 775


>gi|332704672|ref|ZP_08424760.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332554821|gb|EGJ51865.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 939

 Score =  351 bits (900), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 105/570 (18%), Positives = 205/570 (35%), Gaps = 20/570 (3%)

Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
                         E  +  +E     +        +    +   K   E    RN    
Sbjct: 227 TRRLRGLEESAGRLERGVALEEPSPARDEIGRLAGHFGNAARRIQKREAELQQARNEAEK 286

Query: 312 SAYFDE-GENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
            A   E G       ++  P    +      ++  A+   L  +  +    ++I   L +
Sbjct: 287 RAAEAEEGRRTLEAIMEYLPEGLVIADAPDVHIRMASRYALEFSGGEQAKLLDIPEVLHS 346

Query: 369 LLDAPKLSDNNA---IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
                  +D       + + L ++ R         + ++      L M        ++  
Sbjct: 347 SRWKIFDADCQMPMDTRELPLTKAVREGRVVEGGSNCMEDKSGRRLPMHVNAGPIRDRQG 406

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
             +    +  +  D R  +  +     QL   +E     IA+ + +   +  ++     F
Sbjct: 407 NVIGGIVVFRDISDIRQAEEALRRSEGQLRLFVENAPVAIAMFDTQMRYIEASQRWLNNF 466

Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
               + +  +          P          L+  +          +    +        
Sbjct: 467 NLVRQGLRGRSHYETF-PELPEHWKQVHRRSLAGAVEGADADRFERADGSVQWTRWETRP 525

Query: 546 KKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
                       +   D++E  Q +  L  AK+ A+  +  KS+FLA +SHEIRTP+  I
Sbjct: 526 WYTAPGVIGGIIIFSEDVTEAVQIREALRQAKQEADAANKAKSEFLANMSHEIRTPMNGI 585

Query: 604 IGFSE-VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           +G  E  +      P              +S + +LDI+ND+LD+SKIE+GK+ L   P+
Sbjct: 586 MGMIELALLKDPSCPA-----RGNLELAQKSAHHLLDIINDILDLSKIEAGKLELKSRPL 640

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPS 721
            L   V + +  + L A+ K + +     +++P  ++ D   ++Q+ +N++ NA+ FT  
Sbjct: 641 VLRRIVEDVVGTLSLAASRKGVSMHHYIESDVPERLMGDEMRLRQVLMNLVGNAVKFTHE 700

Query: 722 GGQ-IIISTTHTSNEE---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
           G   + + T   ++     +   V DTG+G+    L    + F Q     Q +  GTGLG
Sbjct: 701 GRILVNVETVLRTDGGRICLRFTVSDTGIGIPEERLGDIFESFSQANIETQTKYGGTGLG 760

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           L ++K +V+   G+  + STP  G+     
Sbjct: 761 LTISKLLVELMGGEVSVRSTPGHGSSFTFT 790



 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/183 (7%), Positives = 39/183 (21%), Gaps = 5/183 (2%)

Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212
           + +   +P+ + A PI  R     G  G  +              +R + +     E   
Sbjct: 386 DKSGRRLPMHVNAGPIRDRQGNVIG--GIVVFRDISDIRQAEEALRRSEGQLRLFVENAP 443

Query: 213 GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK---YPLLTSEESSL 269
              ++   +           +     +       +      L       +    +     
Sbjct: 444 VAIAMFDTQMRYIEASQRWLNNFNLVRQGLRGRSHYETFPELPEHWKQVHRRSLAGAVEG 503

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
            + + F   + +    +                +      + +    E      +  D  
Sbjct: 504 ADADRFERADGSVQWTRWETRPWYTAPGVIGGIIIFSEDVTEAVQIREALRQAKQEADAA 563

Query: 330 PIP 332
              
Sbjct: 564 NKA 566


>gi|303247150|ref|ZP_07333425.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           fructosovorans JJ]
 gi|302491576|gb|EFL51461.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           fructosovorans JJ]
          Length = 801

 Score =  351 bits (900), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 112/695 (16%), Positives = 227/695 (32%), Gaps = 64/695 (9%)

Query: 182 GIVHVN-RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV 240
            +     R      A   R D+            +          +         +    
Sbjct: 79  ALCRDIIRETPLGSANCARSDRSLGEACPQGPAVAKCLSGGLLDGATPIFFGKRHIATWF 138

Query: 241 SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF 300
                  +            +   E++     E    ++  ++ K             + 
Sbjct: 139 IGQVADESFDAAAGMAYAREIGADEDAFRRALEKVPRMSRERFGKVCTALYCFAEHLSAM 198

Query: 301 EYLSHRNH------PSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTK 353
              +H+            A     +    + +D  P P   V + G++ + N +   LT 
Sbjct: 199 ALRNHQQSLLIDDLRQAQAELKTRDRNLADLIDFLPDPTMVVNAQGSVVFWNKAMEKLTG 258

Query: 354 YKSVDDI--------EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405
             +VD +        E   G  T L                  +D+   +  A +     
Sbjct: 259 IAAVDMLGKSRFEYGEPFYGAPTPLLIDYARGAVGQPDARYVVADKNVDSIIAEVSVATL 318

Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465
            R     +        +          +  +  D +     +     +   I+E  ++G+
Sbjct: 319 PRGPRH-IWAKAVALRDDTGRITGGIEVIRDITDNQRADLALRESEEKFRRIVETANEGV 377

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
            +++        NR ++ + G   E++       FL + +   +  +L ++         
Sbjct: 378 WVLDAADKTAFVNRRMAAMLGCSAEEMPGSLVEPFLTEKSLPTVRAHLDKLR-QGQTTVF 436

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAE---- 579
           E      T     + +                    DI+  K+ + +L+ +    E    
Sbjct: 437 EHELRAVTGAVLWVMVSASPLYDGSGRYIGALGMFTDITARKKIEEELAESSHRLEAEVE 496

Query: 580 ---------------------KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ---RF 615
                                +    KS FL+ VSHE+RTPLT+I+GF+++I      +F
Sbjct: 497 ERTRDLRLQALELAEANIRLSELDRLKSAFLSTVSHELRTPLTSILGFAKLIGRDFNDQF 556

Query: 616 GPLGN---------PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
            PL            R       +      +  ++ND+LD+++IESG M+      +  E
Sbjct: 557 LPLATGVPALEAKGRRIASNLAVVYGEAERLTRLINDVLDLNRIESGNMHWRDTRFNPLE 616

Query: 667 AVSEAISLVQLYANEK-RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725
            + +A + ++   +++  I        ++P +  D   + Q+  N+L NA+ FT  G   
Sbjct: 617 VLGKAANSIKGLLSQRPEITFVLEMNEDVPEVRMDPDQLIQVVTNLLQNAVKFTREG--- 673

Query: 726 IIS-TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ--IRGEGTGLGLPLAK 782
            +  T     E V L + D+G+G+   ELE     F Q+  S       +GTGLGL + +
Sbjct: 674 TVRMTVRREGEAVELAIADSGIGIPPGELEAIFGKFHQVGRSDTMGETTKGTGLGLAICR 733

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
            +V    G+ +  S   +G++  ++ P  D +   
Sbjct: 734 QIVRHYGGRIWAESQLGQGSVFYVLLPGCDAAQAE 768



 Score = 65.0 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 25/256 (9%), Positives = 67/256 (26%), Gaps = 18/256 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147
           ++A G +   ++ + K  G  A  M+G    +  +  +  P    I            + 
Sbjct: 240 VNAQGSVVFWNKAMEKLTGIAAVDMLGKSRFEYGEPFYGAPTPLLIDYARGAVGQPDARY 299

Query: 148 TLWPIEGTNLYVPIDLAALP------------IYSRNREFSGFRGFGIVHVNRVDNDPRA 195
            +      ++   + +A LP            +       +G  G  ++     +     
Sbjct: 300 VVADKNVDSIIAEVSVATLPRGPRHIWAKAVALRDDTGRITG--GIEVIRDITDNQRADL 357

Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ---SPPPHLRMKNKVSSLTEYYAHKDD 252
             +  ++KF  + E       V              +       +    SL E +  +  
Sbjct: 358 ALRESEEKFRRIVETANEGVWVLDAADKTAFVNRRMAAMLGCSAEEMPGSLVEPFLTEKS 417

Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
           +     +     +  +   + +   +             L + S      L      +  
Sbjct: 418 LPTVRAHLDKLRQGQTTVFEHELRAVTGAVLWVMVSASPLYDGSGRYIGALGMFTDITAR 477

Query: 313 AYFDEGENLTPETVDK 328
              +E    +   ++ 
Sbjct: 478 KKIEEELAESSHRLEA 493



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/225 (10%), Positives = 61/225 (27%), Gaps = 7/225 (3%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            W +DA      ++  +   +G  A +M G  +        +       D L++  T   
Sbjct: 377 VWVLDAADKTAFVNRRMAAMLGCSAEEMPGSLVEPFLTEKSLPTVRAHLDKLRQGQTTVF 436

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +  L  + G    + + ++A P+Y  +  + G  G  +                   +  
Sbjct: 437 EHELRAVTG--AVLWVMVSASPLYDGSGRYIGALG--MFTDITARKKIEEELAESSHRLE 492

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL--LT 263
              E +     ++  +    + +      R+K+   S   +              L    
Sbjct: 493 AEVEERTRDLRLQALELAEANIRLSE-LDRLKSAFLSTVSHELRTPLTSILGFAKLIGRD 551

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
             +  LP       +             +   ++     ++    
Sbjct: 552 FNDQFLPLATGVPALEAKGRRIASNLAVVYGEAERLTRLINDVLD 596


>gi|188583920|ref|YP_001927365.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi
           BJ001]
 gi|179347418|gb|ACB82830.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi
           BJ001]
          Length = 798

 Score =  351 bits (900), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 98/510 (19%), Positives = 193/510 (37%), Gaps = 19/510 (3%)

Query: 317 EGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
                     D  P   ++    GNL + N  +   T     +    A      L  P  
Sbjct: 19  PTMADFRNLADALPQLAWIAEADGNLVWYNRRWYDYTGTTPAEM---ADHGWRKLHHPDH 75

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
            +  A +      +  +          ++           +     N     +   G   
Sbjct: 76  LERAAARFAACIAAGESWQD----TFPLRGKDGRYRWFLSLAEPVRNADGVIVRWYGTNT 131

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
           +  +TR+ +  +     +  ++++A++  I     +G ++      +   G   E     
Sbjct: 132 DVTETRLAQDALGHSEQRFRALVDASAAVIWNTTAQGELMPPQPRWAAYTGQGEEAYQGW 191

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-- 553
            +   +  +  +       E +     +  E        +     + +    +       
Sbjct: 192 GWVDAVHPDDRARAAEVWAECVE--AVKVYEVEYRLRRYDGVWRDMEVRGVPVLAEDGTI 249

Query: 554 --YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
             +     DI+  K+ +  +  A+  AE  +  KS FLA +SHE+RTPL+A+IG+SE + 
Sbjct: 250 REWVGLNIDITARKEAEAAIEQARAAAEAANLAKSQFLANMSHELRTPLSAVIGYSE-ML 308

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
            +    LG    +     I+ +   +L ++ND+LDISKIE+G++ L  E   +   + + 
Sbjct: 309 GEELEDLGQAELLPDLRKIESAARHLLGLINDVLDISKIEAGRLTLAAESFDVASLIEDV 368

Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
            +  Q    +KR   R     ++  +  D   ++Q  +N++ NA  F+  G +I++S   
Sbjct: 369 SAATQSLITKKRNRFRLDLEGDLGAMHQDQLKLRQSLINLIGNAAKFSEDG-EIVLSVRR 427

Query: 732 ---TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                 E +   V DTG+G+T  ++ +  + F Q   S   +  GTGLGL + +A ++  
Sbjct: 428 VREEDGEWLSFAVSDTGIGLTQEQIGRLFERFSQADESTTRQFGGTGLGLAITRAFIERM 487

Query: 789 MGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
            G   + ST   G    I  P    +H  +
Sbjct: 488 GGTIGVESTFGAGATFTIRLPATLAAHEEE 517



 Score = 71.2 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 24/263 (9%), Positives = 57/263 (21%), Gaps = 15/263 (5%)

Query: 56  DQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIG 115
           D    +   T        F         +  W  +A G L   +       G    +M  
Sbjct: 11  DGKVPATGPTM-----ADFRNLADALP-QLAWIAEADGNLVWYNRRWYDYTGTTPAEMAD 64

Query: 116 MRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNRE 174
                +    H++         +    +W     L   +G   Y      A P+ + +  
Sbjct: 65  HGWRKLHHPDHLERAAARFAACIAAGESWQDTFPLRGKDGR--YRWFLSLAEPVRNADGV 122

Query: 175 FSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP---- 230
               R +G           +      +++F  L +           + ++   Q      
Sbjct: 123 IV--RWYGTNTDVTETRLAQDALGHSEQRFRALVDASAAVIWNTTAQGELMPPQPRWAAY 180

Query: 231 PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG 290
                   +     +     D     E +            +      +      +    
Sbjct: 181 TGQGEEAYQGWGWVDAVHPDDRARAAEVWAECVEAVKVYEVEYRLRRYDGVWRDMEVRGV 240

Query: 291 TLQNNSKESFEYLSHRNHPSLSA 313
            +        E++      +   
Sbjct: 241 PVLAEDGTIREWVGLNIDITARK 263


>gi|144898961|emb|CAM75825.1| PAS [Magnetospirillum gryphiswaldense MSR-1]
          Length = 1444

 Score =  351 bits (900), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 117/598 (19%), Positives = 218/598 (36%), Gaps = 29/598 (4%)

Query: 228 QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287
            +    L +  + ++  E+ A +   +         +  S L E     T          
Sbjct: 349 AATLVTLPIARRFAAPLEHLAEESTRIGRLDLQRPVAVASDLAEISALATAQEAMRQALL 408

Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSA---YFDEGENLTPETVDKCPIPFFVYS--HGN-- 340
              +    +  + E         L       +    L  E  D  P   F +    G   
Sbjct: 409 ASTSRLEEANATLEARVSERTWELEQSKGAAEWSRQLLREMADSLPCATFRFEVVPGRSP 468

Query: 341 -LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399
              + +     +    + + +   G     L    L      +   + R   T +     
Sbjct: 469 AFRFVSAQVARILGVTAAELMNDPGLRLKNLHPDDLEPARIAQAEAIDRGQPTNLLYRVV 528

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459
           L         +          +  F      NG   +  +      ++ +   +L ++ +
Sbjct: 529 L------GNTAPRWIETRSMVSESFDGTRVWNGYWLDVTEREEALARIRMAEERLRALTD 582

Query: 460 ATSDGIAIINREG---IILSTNRAVSKLFGYPVEDILRK--PFTVFLEQNTPSVMNHYLT 514
           +    +  +  +G        +R V ++ G   +++          +       +   + 
Sbjct: 583 SVPVAVFEMRSQGDLFWFTFISRKVREILGIGRDELRANAGRLYGTVAAADRDGLEESVV 642

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL-TMHDISEWKQEKNKLSH 573
             +   L  +          +E+ + +  +                DI+  KQ + +L+ 
Sbjct: 643 AAIGGGLHFSASFRLDSP-GDERWIRMEAVPIPGEQGDRVWAGFFQDITAVKQAEAELTR 701

Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
           AK++AE  +  KSDFLA +SHEIRTP+ AIIG S +       P    R  +Y   I  +
Sbjct: 702 AKELAEDATRMKSDFLANMSHEIRTPMNAIIGMSHLTLKTPLTP----RQHDYVKKIQGA 757

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693
           G  +L I+ND+LD SKIE+GK+ +      LD+ +    SL+    N K + +     ++
Sbjct: 758 GQHLLGIINDILDFSKIEAGKLTVEHIGFDLDKVLDNIASLLTEKTNAKNLELVFDVPSD 817

Query: 694 IPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVI--LRVRDTGVGMT 749
           +PR ++ D   + QI +N  +NA+ FT  G   II+     +  EV+    VRDTG+G+T
Sbjct: 818 VPRALVGDSLRLGQILINYANNAVKFTEKGEIDIIVRVQERTQTEVVLYFAVRDTGIGIT 877

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
             +  +  + F Q   S   +  GTGLGL ++K + +   G   + S   KG+     
Sbjct: 878 PEQKARLFQSFEQADTSTTRKFGGTGLGLAISKKLAELMDGAVGVESEYGKGSTFWFT 935



 Score = 45.8 bits (107), Expect = 0.032,   Method: Composition-based stats.
 Identities = 26/270 (9%), Positives = 71/270 (26%), Gaps = 34/270 (12%)

Query: 73  TFVFD--PIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI---GMRLCDVSDILHI 127
           TF F+  P                 + +S ++ + +G  A +++   G+RL ++     +
Sbjct: 457 TFRFEVVPGRSPA-----------FRFVSAQVARILGVTAAELMNDPGLRLKNL-HPDDL 504

Query: 128 DPNN-HIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF-GIVH 185
           +P      + + R            + G      I+  ++     +  F G R + G   
Sbjct: 505 EPARIAQAEAIDRGQPTN--LLYRVVLGNTAPRWIETRSM----VSESFDGTRVWNGYWL 558

Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE 245
                 +  A  +  +++   L +         + + D+F        +R    +     
Sbjct: 559 DVTEREEALARIRMAEERLRALTDSVPVAVFEMRSQGDLFWFTFISRKVREILGIGRDEL 618

Query: 246 YY--------AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297
                         D    E+  +                   ++   +     +     
Sbjct: 619 RANAGRLYGTVAAADRDGLEESVVAAIGGGLHFSASFRLDSPGDERWIRMEAVPIPGEQG 678

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
           +   +       +     +       E  +
Sbjct: 679 DR-VWAGFFQDITAVKQAEAELTRAKELAE 707


>gi|308071607|ref|YP_003873212.1| sensor protein yycG [Paenibacillus polymyxa E681]
 gi|305860886|gb|ADM72674.1| Sensor protein yycG [Paenibacillus polymyxa E681]
          Length = 609

 Score =  351 bits (900), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 87/374 (23%), Positives = 164/374 (43%), Gaps = 25/374 (6%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           R    + E E  +L SIL   SDG+   +  G ++  NR  S + G    ++  +   V 
Sbjct: 251 REALSQNEEEKEKLSSILTNMSDGVVATDDNGRVILVNRRASAMLGVNENEMTGRHIAVL 310

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTM 558
           L  +           + S     TL ++      E  ++ +                  +
Sbjct: 311 LGIDPEET-----EALYSGSSASTLLQLEPAGQDEPIVIRVTFTPIHRREFGITGTIAVL 365

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            D++E ++ +                + +F+A VSHE+RTPLT I  ++E +     G +
Sbjct: 366 QDVTEQEEMETT--------------RREFVANVSHELRTPLTTIRSYAEAL---DDGAM 408

Query: 619 GNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
             P+  E +   I      ++ +V DLL +S+++S +  L  +P  + E + E       
Sbjct: 409 AEPQVAERFVGVIRNETERMIRLVTDLLHLSRLDSNEAPLRMQPTDVMEMLDEVADRFSF 468

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737
              +K I         I +++ D   ++Q+  N++SNA+ +TP GG I I     S   +
Sbjct: 469 QMKQKHIRSGMFVEQGIGKVVIDRDQIEQVLDNLMSNALKYTPDGGSIRIEARRNSEGML 528

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
            + V+DTG+G+   +L++  + F ++  ++     GTGLGL +A+ +V A+ G+ ++ S 
Sbjct: 529 SISVQDTGIGIPKKDLDRIFERFYRVDKARSRNMGGTGLGLSIAREIVKAHGGQIFLESE 588

Query: 798 PAKGTLIEIIFPLY 811
             +GT      P+ 
Sbjct: 589 YGQGTCTTFTLPMS 602



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 34/308 (11%), Positives = 80/308 (25%), Gaps = 35/308 (11%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            D +G +  ++      +G    +M G     ++ +L IDP     + L   ++      
Sbjct: 278 TDDNGRVILVNRRASAMLGVNENEMTGRH---IAVLLGIDPEE--TEALYSGSSASTL-L 331

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                G +  + I +   PI+ R    +G     ++       +     +      SH  
Sbjct: 332 QLEPAGQDEPIVIRVTFTPIHRREFGITGT--IAVLQDVTEQEEMETTRREFVANVSHEL 389

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
                      E  D  +   P                 A +   +   +   +    + 
Sbjct: 390 RTPLTTIRSYAEALDDGAMAEP---------------QVAERFVGVIRNETERMIRLVTD 434

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG-------ENL 321
           L       +       +      + +   + F +   + H     + ++G        + 
Sbjct: 435 LLHLSRLDSNEAPLRMQPTDVMEMLDEVADRFSFQMKQKHIRSGMFVEQGIGKVVIDRDQ 494

Query: 322 TPETVDKCPIPFFVY--SHGNLFYANPSFLLLTKYKSVDDIE---IAGGLSTLLDAPKLS 376
             + +D        Y    G++              SV D         L  + +     
Sbjct: 495 IEQVLDNLMSNALKYTPDGGSIRIEARRNSEGMLSISVQDTGIGIPKKDLDRIFERFYRV 554

Query: 377 DNNAIKPV 384
           D    + +
Sbjct: 555 DKARSRNM 562


>gi|327538028|gb|EGF24718.1| two-component hybrid sensor and regulator [Rhodopirellula baltica
           WH47]
          Length = 953

 Score =  351 bits (900), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 125/728 (17%), Positives = 254/728 (34%), Gaps = 57/728 (7%)

Query: 118 LCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSG 177
             +V  ++ +   +    LLKR  +    T               + A  +  R R+F  
Sbjct: 96  WSEVPILVLLQAGDPDSKLLKRVLSLEHVTL-IHRPLRIAVFINTVRAK-LRDRMRQFE- 152

Query: 178 FRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS----PPPH 233
                 V    ++ D      R + +   +     G ++ E  K  ++  ++        
Sbjct: 153 ------VRDLLLEKDRAQTSLRREARRLDMAIQAGGMAAWEWSKTHVYWSEAFRRLHGFG 206

Query: 234 LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293
             ++   S++       +       +     + +    +   +   L +         ++
Sbjct: 207 KNVQPSESAMFGSIVESEREQIANHWSDAIEQNAPFRSEFRINHPKLGERWLVAVGEPVK 266

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC----PIPFFVYSHGNLFYANPSFL 349
             S ++  Y   +   +     +     + ET  +     P   +V           +  
Sbjct: 267 GKSGKTLRYTGLQWDITERKTAEMELRQSHETFQRLITDNPQGLYVVDADFRMRYVSAGA 326

Query: 350 LLTKYKSVDDIEIA--GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
                     I       + T+       +   +    L   +               + 
Sbjct: 327 RNVFINVNPLIGRPFEDVMRTIWPNEFAEEAIRVFRHTLETGEPYVAPPLVEQRVDTSDI 386

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
           E             N+             +   +++   +         I +A+   + +
Sbjct: 387 EAYDWSIERIVLPDNRQGVVCHFY----NNTQRQLSVDLLRESERYFREIADASPAMLWV 442

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
            +   +    ++      G   E+ +   +T     +  +        + + + RQ    
Sbjct: 443 TDENHMCTFLSKNWYDTTGQTQEEGMGLGWTNATHPDDHARAGEEF--LTAANARQPFLS 500

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESS 583
                  +        + +    S    +     + D+ + K  +  L  AK IAE  + 
Sbjct: 501 EYRLRMADGSYRWAVDVGRPRFDSDGVFVGYTGYVIDVDDRKAFEQSLEQAKVIAENANR 560

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
            + +FLA +SHEIRTP+ AI+G ++++K+     L +P  I+    I R+GN +L+I+ND
Sbjct: 561 SRGEFLANMSHEIRTPMAAILGHADILKDH----LKDPDNIQVVETIRRNGNFLLNIIND 616

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLR 702
           +LD+SKI+SGKM L  + V  D  ++E  SL+ + A+EK + ++  F   IP  I  D  
Sbjct: 617 ILDLSKIDSGKMQLETDRVRPDGLLAEVRSLMDVRASEKHLPLKIEFDGPIPDLIETDAV 676

Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----------------------EVILR 740
            ++QI LN++ NAI FT SG ++ I   +                           +I +
Sbjct: 677 RLRQILLNLVGNAIKFTDSG-EVKILVGYDGPGKRPAEIDQSDPSKLQSPVAGTCRLIFQ 735

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           + DTG+G+   +     +PF Q  ++      GTGLGL + + +  A  G   + ST  K
Sbjct: 736 IVDTGIGIKPEDQASLFEPFVQADSTSTRSFGGTGLGLAICRRLAHALGGDVSVESTYGK 795

Query: 801 GTLIEIIF 808
           G+   +  
Sbjct: 796 GSKFTLTI 803



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/161 (10%), Positives = 44/161 (27%), Gaps = 6/161 (3%)

Query: 69  DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH-I 127
           +SE  F            W  D +     +S+    T G    + +G+   + +      
Sbjct: 424 ESERYFREIADASPA-MLWVTDENHMCTFLSKNWYDTTGQTQEEGMGLGWTNATHPDDHA 482

Query: 128 DPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187
                       +  +  +  L   +G+     +D+   P +  +  F G+ G+ I    
Sbjct: 483 RAGEEFLTAANARQPFLSEYRLRMADGS-YRWAVDV-GRPRFDSDGVFVGYTGYVI--DV 538

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228
                     ++      + +  +    +    +       
Sbjct: 539 DDRKAFEQSLEQAKVIAENANRSRGEFLANMSHEIRTPMAA 579


>gi|148254486|ref|YP_001239071.1| multi-sensor signal transduction histidine kinase [Bradyrhizobium
           sp. BTAi1]
 gi|146406659|gb|ABQ35165.1| multi-sensor signal transduction histidine kinase [Bradyrhizobium
           sp. BTAi1]
          Length = 587

 Score =  351 bits (900), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 116/408 (28%), Positives = 193/408 (47%), Gaps = 24/408 (5%)

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
                   D   R     + +E  +   +    SD I+   R G ++  + AV  L G  
Sbjct: 158 AAVLAFAADTLARTGVTLLSMEEERYRLLARNMSDVISRHRRNGAVMFISPAVENLLGTS 217

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK--------LLS 540
           V  +        +           L+E        ++E         +          + 
Sbjct: 218 VAQLQGHGLFERVHVADRPAYLTALSEAARGSEASSVEFRLRRDAGGDTRGPHHAVDFIW 277

Query: 541 LRIIIKKLPFSSC--------YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
           + +  + L  ++             M D+++ K ++  L  A+  AE+  + K+ FLA +
Sbjct: 278 VEMRCRPLDAAARTPSGAEQEVVAVMRDVTDRKLQEQALELARSAAERADAAKTRFLATM 337

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHE+RTPL AIIGFSE++  ++   L   R  EYA  I+ SG  +L +VN +LD+SK+ES
Sbjct: 338 SHELRTPLNAIIGFSEMLMQEQALVLNAARRREYAQLINDSGQHLLSVVNGILDMSKMES 397

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712
           G   L  EP +   A+    +L+ L A E  + +     +++P I  D R+ KQI +N++
Sbjct: 398 GNFELTPEPFAPRAALINCCNLLALRARENGVDLSADVPHDLPTITGDPRAFKQIVINLV 457

Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           SNAI FT  GG++++S       +++LR+ DTGVG+   +L++   PF Q   + Q R E
Sbjct: 458 SNAIKFTERGGRVMVSAAIE-GPQLLLRITDTGVGIAADDLKRIGDPFFQAGKTYQRRHE 516

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820
           GTGLGL + K++V+ + G+  I S   +GT + I  P+       DC+
Sbjct: 517 GTGLGLSIVKSLVNLHGGEMSIESKLDEGTTVSIALPI-------DCV 557



 Score = 44.2 bits (103), Expect = 0.089,   Method: Composition-based stats.
 Identities = 13/146 (8%), Positives = 37/146 (25%), Gaps = 11/146 (7%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGKTTL 149
            +G +  IS  +   +G    ++ G  L +   +         + +  +       +  L
Sbjct: 199 RNGAVMFISPAVENLLGTSVAQLQGHGLFERVHVADRPAYLTALSEAARGSEASSVEFRL 258

Query: 150 WPIEGTNLY--------VPIDLAALPIYSRNREFSGFRG--FGIVHVNRVDNDPRALGKR 199
               G +          + +++   P+ +  R  SG       ++             + 
Sbjct: 259 RRDAGGDTRGPHHAVDFIWVEMRCRPLDAAARTPSGAEQEVVAVMRDVTDRKLQEQALEL 318

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIF 225
                      K    +    +    
Sbjct: 319 ARSAAERADAAKTRFLATMSHELRTP 344


>gi|325109812|ref|YP_004270880.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
           5305]
 gi|324970080|gb|ADY60858.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
           5305]
          Length = 1097

 Score =  350 bits (899), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 97/600 (16%), Positives = 214/600 (35%), Gaps = 31/600 (5%)

Query: 235 RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294
           R   ++ +  ++    D            S+ S    +      +        +   + +
Sbjct: 226 RNPTQLETFFDHLHDDDRSSIEAAIKKTVSDGSPYDARYRIFLDSGELRHIAAHGQLVYD 285

Query: 295 NSKESFEYLSHRNHPSLSAYFD----EGENLTPETVDKCPIPFF-VYSHGNLFYANPSFL 349
           ++ E    +      +     +      E     T ++  +    V   G+    N    
Sbjct: 286 DNNEPERLIGVCVDRTREQQHEDALAASEERYRATFEQAAMGIAHVGPDGSWLRVNQGLC 345

Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDN-NAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
            +  Y + + + ++             D+  A   ++           S     +     
Sbjct: 346 DIVGYTAEELMALS------FQDITHPDDLTADLELVQQILAGELKRYSLEKRYVHKAGH 399

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468
             + +        +          +  +  + +  +  +     Q   +  +   GI   
Sbjct: 400 T-VWINLTVSLIQHADGSPNYFISVVEDIQERKQAELALRRMTHQFEQLFSSELLGIMTC 458

Query: 469 NREGIILSTNRAVSKLFGYPVE-DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
             +G +   N  + +L        +    +   +  +  +     + +       +  E 
Sbjct: 459 RLDGAVEQMNTELRRLLSLSESVPLTNVNWRKLIAPDCLAHDETVIEQTRETGTARPWET 518

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH-DISEWKQEKNKLSHAKKIAEKESSHKS 586
             L    +   + + + +  +  +S   +    D +  KQ +  L  AK  AEK S+ KS
Sbjct: 519 EFL--RADGTRIPVVMGLTAIDPASSLCIGFVLDATRQKQTEANLLAAKLTAEKASAAKS 576

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
           +FLA +SHE+RTPL  +IG ++++ N       +    ++A     SG  +L +++D+LD
Sbjct: 577 EFLATMSHELRTPLNGVIGMTQLLMNTEL----DSDQHQFARACHSSGKTLLALISDILD 632

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR--TSFANNIPRILADLRSV 704
           +SK+E+G++ L  +P  L   ++E     +       +  +    F   +  +  D   +
Sbjct: 633 LSKVEAGRLELEQQPFRLGNLITEVEDSTRPALEADGLTFQNTRQFPEGL-VLRGDRVRL 691

Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHT----SNEEVILRVRDTGVGMTNYELEKAMKPF 760
            ++ +N+L NA  FTP G  I + T          ++   + DTG+G+   +  +    F
Sbjct: 692 LRVLMNLLGNAGKFTPEGS-ISLVTRMEQPSEDTADLHFSITDTGIGIEGSKQGRLFDAF 750

Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL--IEIIFPLYDTSHPHD 818
            Q+ +S   R  G+GLGL + K +V+A  G+  + S    G+     I  P+   +   D
Sbjct: 751 TQLDSSTTRRYGGSGLGLAICKHLVEAMEGEIGVESELGHGSTFWFRISLPIVPEAELAD 810



 Score = 74.7 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 22/248 (8%), Positives = 71/248 (28%), Gaps = 21/248 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN--TWYGK 146
           +   G    +++ L   +G  A +++ +   D++    +  +  +   +       +  +
Sbjct: 331 VGPDGSWLRVNQGLCDIVGYTAEELMALSFQDITHPDDLTADLELVQQILAGELKRYSLE 390

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                  G  +++ + ++ +     +  +       +V   +         +R+  +F  
Sbjct: 391 KRYVHKAGHTVWINLTVSLIQHADGSPNY----FISVVEDIQERKQAELALRRMTHQFEQ 446

Query: 207 LH----------EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256
           L            +      +  E   + S     P   +  +     +  AH + V+  
Sbjct: 447 LFSSELLGIMTCRLDGAVEQMNTELRRLLSLSESVPLTNVNWRKLIAPDCLAHDETVI-- 504

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
                     ++ P + +F   +  +         +   S     ++        +    
Sbjct: 505 ---EQTRETGTARPWETEFLRADGTRIPVVMGLTAIDPASSLCIGFVLDATRQKQTEANL 561

Query: 317 EGENLTPE 324
               LT E
Sbjct: 562 LAAKLTAE 569



 Score = 43.5 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 22/199 (11%), Positives = 61/199 (30%), Gaps = 10/199 (5%)

Query: 403 IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT---RINKRKMEIEVMQLCSILE 459
           I W     LA        A      +      P+ ++     +   +++  V +L     
Sbjct: 135 IFWWPAYRLAGLLKAITAAVSLATAIVLVRFMPKILEAPSNAVLAEELKETVQRLNCAAA 194

Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK--PFTVFLEQNTPSVMNHYLTEIL 517
           A   G+   + +   L  +  ++++F    E    +   F   L  +  S +   + + +
Sbjct: 195 AAQMGVWEWSIQDNCLRWDEQLAQMFDLQPERNPTQLETFFDHLHDDDRSSIEAAIKKTV 254

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAK 575
           S              + E + ++    +     +          D +  +Q ++ L+ ++
Sbjct: 255 SDGSPYDARYRIFLDSGELRHIAAHGQLVYDDNNEPERLIGVCVDRTREQQHEDALAASE 314

Query: 576 KIAEKESSHKSDFLARVSH 594
           +               ++H
Sbjct: 315 ERYRATFE---QAAMGIAH 330


>gi|225174149|ref|ZP_03728148.1| multi-sensor signal transduction histidine kinase [Dethiobacter
           alkaliphilus AHT 1]
 gi|225169934|gb|EEG78729.1| multi-sensor signal transduction histidine kinase [Dethiobacter
           alkaliphilus AHT 1]
          Length = 587

 Score =  350 bits (899), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 92/369 (24%), Positives = 170/369 (46%), Gaps = 25/369 (6%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +     +  E  +L +I+ + ++G+  I+ +G ++  N     L      D+  K  +  
Sbjct: 240 QQTVEDLSHEKSKLENIMLSMNEGVMAIDGQGKVILANPQARSLLKLSETDLTGKEISSL 299

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII-KKLPFSSCYSLTMH 559
           L       MN    ++++     + E    G     K+LSL+I    +   +      + 
Sbjct: 300 LP---QEEMNQLFMDVIASSEVHSAEYQVFG----GKVLSLQIAPLYRNNQTWGAVGILQ 352

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           D++E +  +                + DF+A VSHE+RTP+T+I GF E + +       
Sbjct: 353 DVTEVRHLE--------------QMRRDFVANVSHELRTPMTSIQGFVEALLDGL--AED 396

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
                 Y N I      +  +V+DLLD+S++E G++    E + L    ++  S +Q   
Sbjct: 397 KESQDRYLNVILDETVRLNRLVSDLLDLSRLEKGEVGWPMETIELKPLFADVASKLQPQV 456

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
            ++ + +      NI  +  +   ++Q+ +N+L NAI FTP GG+I +S      ++V +
Sbjct: 457 AKQELSVDIDTPENISAVTGNRDRIQQVLINLLGNAISFTPPGGKITLS-AKDVGDKVEV 515

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
           +V DTG+G+   E +K  + F ++  ++     GTGLGL + K +VDA+ G   + STP 
Sbjct: 516 QVTDTGMGIPPEEQDKIWERFHKVDKARTRSFGGTGLGLSIVKQIVDAHGGDVGLESTPG 575

Query: 800 KGTLIEIIF 808
           KG+      
Sbjct: 576 KGSTFYFTL 584


>gi|99078407|ref|YP_611665.1| PAS/PAC sensor hybrid histidine kinase [Ruegeria sp. TM1040]
 gi|99035545|gb|ABF62403.1| PAS/PAC sensor hybrid histidine kinase [Ruegeria sp. TM1040]
          Length = 756

 Score =  350 bits (899), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 91/409 (22%), Positives = 185/409 (45%), Gaps = 15/409 (3%)

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR-KMEIEVMQLCSILEATSDGIAI 467
             +    +  ++      N+    ++ + ++    +    + E  +L  I E  +DG+ +
Sbjct: 199 TQIWFVVMVQKRHRNSRRNLRSQALQRQALEDAYMRLFDQKQEARRLAMIAEHANDGVML 258

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFL-EQNTPSVMNHYLTEILSLDLRQTLE 526
           I R+GI+   N   S+L GY  ++++ +     L  +NT       +             
Sbjct: 259 IGRDGIVRWANDGFSRLTGYTFDELVGQNPGKILNSENTDPAALRVIEAGREKGEP--FR 316

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKES 582
              +   K+ K + +      +   +     Y     D++  K+ + +L  A+  AE+ +
Sbjct: 317 AELINRRKDGKEIWIETNQVPVFDDTGQIETYIAVERDVTATKEYERQLKEARLAAEEGA 376

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
             K +FLA +SHE RTP+  +IG +++++        +     Y + I  S   +L ++N
Sbjct: 377 RIKEEFLATMSHEFRTPMNGVIGMAQMLQATDL----SEDQRLYTDTILGSSRALLALIN 432

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADL 701
           D+LD+S + +  ++L      L   V + + L+   A+EK + +      ++P  +  D 
Sbjct: 433 DVLDLSHMNAAGVSLFNVDFDLHACVGDIVRLLSGQADEKHLELSVEIDPDVPVWVTGDD 492

Query: 702 RSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNE-EVILRVRDTGVGMTNYELEKAMKP 759
           R ++QI +N+L NA+ FT SG   I +    T ++  + + V DTG+G+   +LEK  + 
Sbjct: 493 RRLRQILVNLLGNAVKFTTSGSIFIRLRGVVTGDQVALKIEVEDTGIGIPADKLEKIFER 552

Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           F Q  N+   +  G+GLGL +++ +  A  G   + S   +G    ++ 
Sbjct: 553 FSQADNAISRKYGGSGLGLSISRGLAQAMGGDIDVTSVEGEGACFTLML 601



 Score = 68.1 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 22/248 (8%), Positives = 63/248 (25%), Gaps = 11/248 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTWYGK 146
           I   G ++  ++   +  G    +++G     + +  + DP     I    ++   +  +
Sbjct: 259 IGRDGIVRWANDGFSRLTGYTFDELVGQNPGKILNSENTDPAALRVIEAGREKGEPFRAE 318

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                 +G    + I+   +P++    +   +    +        +     K        
Sbjct: 319 LINRRKDG--KEIWIETNQVPVFDDTGQIETY--IAVERDVTATKEYERQLKEARLAAEE 374

Query: 207 LHEIKKGHSSVEKEKYD-----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
              IK+   +    ++      +           +       T+        L      +
Sbjct: 375 GARIKEEFLATMSHEFRTPMNGVIGMAQMLQATDLSEDQRLYTDTILGSSRALLALINDV 434

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
           L     +      F+               L   + E    LS    P +  +    +  
Sbjct: 435 LDLSHMNAAGVSLFNVDFDLHACVGDIVRLLSGQADEKHLELSVEIDPDVPVWVTGDDRR 494

Query: 322 TPETVDKC 329
             + +   
Sbjct: 495 LRQILVNL 502



 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/286 (10%), Positives = 78/286 (27%), Gaps = 19/286 (6%)

Query: 172 NREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231
                GF     V ++        L +        L         +           +  
Sbjct: 105 AGSVCGFAAIPYVQMHTEAGAHEILAEPFFALCIVLGPALSAALDL-----RYVPLAASV 159

Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291
             L +      LT +   ++     +   ++    +    Q  F  +   ++   +    
Sbjct: 160 RLLMLSLLPFGLTAHILLQNQTHGADLQLMVAGLVAFFFTQIWFVVMVQKRHRNSRRNLR 219

Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLL 350
            Q   +++ E    R          +         +        +   G + +AN  F  
Sbjct: 220 SQALQRQALEDAYMR-----LFDQKQEARRLAMIAEHANDGVMLIGRDGIVRWANDGFSR 274

Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
           LT Y   + +    G    +   + +D  A++ +   R         A L   + + +  
Sbjct: 275 LTGYTFDELVGQNPGK---ILNSENTDPAALRVIEAGREKGE--PFRAELINRRKDGKEI 329

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
              T       +   +      +E +   T+  +R+++    +L +
Sbjct: 330 WIETNQ-VPVFDDTGQIETYIAVERDVTATKEYERQLK--EARLAA 372


>gi|125974817|ref|YP_001038727.1| multi-sensor signal transduction histidine kinase [Clostridium
           thermocellum ATCC 27405]
 gi|256004926|ref|ZP_05429899.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           thermocellum DSM 2360]
 gi|281418729|ref|ZP_06249748.1| multi-sensor signal transduction histidine kinase [Clostridium
           thermocellum JW20]
 gi|125715042|gb|ABN53534.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           thermocellum ATCC 27405]
 gi|255991106|gb|EEU01215.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           thermocellum DSM 2360]
 gi|281407813|gb|EFB38072.1| multi-sensor signal transduction histidine kinase [Clostridium
           thermocellum JW20]
 gi|316941937|gb|ADU75971.1| multi-sensor signal transduction histidine kinase [Clostridium
           thermocellum DSM 1313]
          Length = 600

 Score =  350 bits (899), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 84/374 (22%), Positives = 169/374 (45%), Gaps = 24/374 (6%)

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
            + R    ++  E  ++ +IL   +DG+   N  G ++  N     + G    D     F
Sbjct: 249 RELRKTLNQISREKSKIETILNYMTDGVIAFNINGEVIHINPVAKAILGIEKCDFDFNEF 308

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT 557
           +     +       YL    + ++   + +  +        +   +   +   +      
Sbjct: 309 SKRYNLDVSIEEVKYLEIYNAKEVSTNIGEKYVK-------IYFALFTDEENNADGVIAV 361

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
           +HDI+E ++ +              + + +F+A VSHE+RTPLT+I  ++E + +     
Sbjct: 362 LHDITEQQKLE--------------NMRKEFVANVSHELRTPLTSIKSYAETLLDGAL-- 405

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
                  ++ + I+   + +  +V DLL +S++++ +M    + +S ++ V   +  V+ 
Sbjct: 406 EDRELAGKFLSVINSEADRMTRLVKDLLQLSRLDNNQMKWDMQKISFEDLVRNCVEKVKF 465

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737
            + EK   +          I+AD   ++Q+ LNIL+NAI +TP GG+I +        EV
Sbjct: 466 ESEEKNQTLECFTIGEELEIVADKDRMEQVVLNILTNAIKYTPEGGKITVYIG-RMYSEV 524

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
            ++V D+G+G+   +L +  + F +   ++     GTGLGL +AK +V+A+ G   + S 
Sbjct: 525 YVKVVDSGIGIPREDLGRIFERFYRTDKARSREMGGTGLGLAIAKEIVEAHKGSISVASE 584

Query: 798 PAKGTLIEIIFPLY 811
           P KGT + +  P  
Sbjct: 585 PGKGTEVTVKLPAA 598


>gi|88861389|ref|ZP_01136019.1| putative two-component member protein [Pseudoalteromonas tunicata
           D2]
 gi|88816655|gb|EAR26480.1| putative two-component member protein [Pseudoalteromonas tunicata
           D2]
          Length = 1106

 Score =  350 bits (899), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 98/515 (19%), Positives = 209/515 (40%), Gaps = 23/515 (4%)

Query: 312 SAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
           S      E+     ++        + + GN+   N +   +  +++ + I     +  ++
Sbjct: 266 SLLAKSNEDRLHAMMNTAIDGIITIDAKGNVVSVNQAVETILGWQACELIGSN--VKKIM 323

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
            +    +++      L       I     +  +         +         +  +    
Sbjct: 324 PSAIADEHDNFLTRYLNTRQAKIIGIGREVTAVHKQG---HLVPVHLGIGHVKQGKEHFF 380

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII--NREGI-ILSTNRAVSKLFGY 487
            G   +       +  ++ +  +  S++     GIA    N  G  ++  + AV  + GY
Sbjct: 381 VGFISDLTKRNTMELALKRKESKFRSLISNIP-GIAYRCKNEPGWPMVYISNAVQTITGY 439

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
              +        F           ++    S     T         ++ ++  L      
Sbjct: 440 APSEFELPNPQRFFSDLYHPDDIAFIE---SQAKPPTFALEYRIIRRDGQIRWLFEHGNY 496

Query: 548 LPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
           +  ++         + DI+E K+ +  L  AK+ AE+ ++ ++ FLA +SHEIRTP+ AI
Sbjct: 497 IQDNNSGETWLDGFIMDITERKEMEQDLLLAKEHAEQAAAARAAFLANMSHEIRTPMNAI 556

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           IGFS+++ +       +   +++ + I RS   +L ++ND+LD +K++ GK+ L     S
Sbjct: 557 IGFSDILLDTAL----DKEQLKHLSTISRSAKSLLHLLNDVLDSAKLDKGKLELENRVFS 612

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSG 722
           L + +   +S + L A ++ + +    +  +    L     ++QI  N++ NA+ FT  G
Sbjct: 613 LTDEIDTVVSTLWLQAKQQNLALEADISPKMASHYLGSPERLRQILTNLIGNAVKFTAQG 672

Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
            ++ +    ++ + V   + DTG+GM+  +LE     F Q   S   +  GTGLG  ++K
Sbjct: 673 -KVTVKIYPSAEQSVTFEIIDTGIGMSAEQLEHVFDAFSQADASMSRKYGGTGLGTTISK 731

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
            +V+   G+  + S   KG++     P+  +  P 
Sbjct: 732 QLVELMGGEIEVESELGKGSIFRFTLPMQISQQPE 766



 Score = 42.3 bits (98), Expect = 0.37,   Method: Composition-based stats.
 Identities = 47/400 (11%), Positives = 109/400 (27%), Gaps = 55/400 (13%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTWY--- 144
           IDA G +  +++ +   +G  A ++IG  +  +      D +++ +   L  +       
Sbjct: 290 IDAKGNVVSVNQAVETILGWQACELIGSNVKKIMPSAIADEHDNFLTRYLNTRQAKIIGI 349

Query: 145 -GKTTLWPIEGTNLYVPIDLA-ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
             + T    +G    VP+ L        +   F GF     +      N      KR + 
Sbjct: 350 GREVTAVHKQGHL--VPVHLGIGHVKQGKEHFFVGF-----ISDLTKRNTMELALKRKES 402

Query: 203 KFSHLHEIKK--GHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYY-----AHKDDV 253
           KF  L        +    +  + +    +    +     ++              H DD+
Sbjct: 403 KFRSLISNIPGIAYRCKNEPGWPMVYISNAVQTITGYAPSEFELPNPQRFFSDLYHPDDI 462

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
              E       +  +   +      +       ++   +Q+N+             +   
Sbjct: 463 AFIESQA----KPPTFALEYRIIRRDGQIRWLFEHGNYIQDNNSGETWLDGFIMDITERK 518

Query: 314 YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
             ++      + +          +    F AN S  + T   +        G S +L   
Sbjct: 519 EMEQ------DLLLAKEHAEQAAAARAAFLANMSHEIRTPMNA------IIGFSDILLDT 566

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
            L          + RS ++ +     +       +  L +    F   ++    +     
Sbjct: 567 ALDKEQLKHLSTISRSAKSLLHLLNDVLDSAKLDKGKLELENRVFSLTDEIDTVVSTLW- 625

Query: 434 EPEDVDTRINKRKMEI------------EVMQLCSILEAT 461
               +  +     +E                +L  IL   
Sbjct: 626 ----LQAKQQNLALEADISPKMASHYLGSPERLRQILTNL 661


>gi|218781753|ref|YP_002433071.1| multi-sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218763137|gb|ACL05603.1| multi-sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 949

 Score =  350 bits (899), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 92/410 (22%), Positives = 156/410 (38%), Gaps = 33/410 (8%)

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
             +          D +    K+     +  +++E     I   +    ++  N   + LF
Sbjct: 117 AIINALEKARLTRDNKEFAEKIRESEERYRALIENAGSAILFFDANDNVILANEVAASLF 176

Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
           G   + +       F+     +        IL   +    E        +++  S  I  
Sbjct: 177 GMEKDKVEGMGIRDFMPSEDAARFTKRFHAILEKGVGGIYEDWVTLPGGQKRCFSSNIHP 236

Query: 546 KKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKI---------------------AEKES 582
                     +   + DI+  K+ +  L  AK+                      A+  +
Sbjct: 237 ISRSDGHIMGFQCILLDITRQKEVEQALRRAKEETEDANRQLEMIIEDSNRLAVQADLAN 296

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
             KS+FLA +SHEIRTP+  ++G   ++              EYA  +  S + +L+I+N
Sbjct: 297 MAKSEFLANMSHEIRTPMNGVVGMISLLLETELTR----EQKEYAETVRNSAHSLLEIIN 352

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADL 701
           D+LD SKIE+GK++L      L   + EA  +V L A EK +        ++P R+  D 
Sbjct: 353 DILDFSKIEAGKLDLEAIDFDLRNTLEEASDIVALRAQEKGLEFVCIIDPDVPFRLKGDP 412

Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDTGVGMTNYELEKAM 757
             ++QI LN+ +NA+ FT  G  I I             +   V DTG+G+     +   
Sbjct: 413 VRLRQIVLNLANNAVKFTAQGS-ITIRVELLKQAPDLLALKFSVTDTGIGVAPSRQQSLF 471

Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
             F Q   S      GTGLGL ++K +     G+  + S   KG+     
Sbjct: 472 DAFTQAEASTTRNYGGTGLGLAISKKLAQMMKGRIGLESEEGKGSTFWFT 521



 Score = 44.6 bits (104), Expect = 0.064,   Method: Composition-based stats.
 Identities = 27/245 (11%), Positives = 66/245 (26%), Gaps = 29/245 (11%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           DA+  +   +E      G    K+ GM + D                   + T      L
Sbjct: 160 DANDNVILANEVAASLFGMEKDKVEGMGIRDFMPSED-----------AARFTKRFHAIL 208

Query: 150 WPIEGTNLYVPIDLAA----------LPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199
               G      + L             PI   +    GF+   I+       +     +R
Sbjct: 209 EKGVGGIYEDWVTLPGGQKRCFSSNIHPISRSDGHIMGFQ--CILLDITRQKEVEQALRR 266

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
             +      +  +    + ++   +            K++  +   +             
Sbjct: 267 AKE---ETEDANRQLEMIIEDSNRLA--VQADLANMAKSEFLANMSHEIRTPMNGVVGMI 321

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN-NSKESFEYLSHRNHPSLSAYFDEG 318
            LL   E +  ++E   T+  + ++  +    + + +  E+ +         L    +E 
Sbjct: 322 SLLLETELTREQKEYAETVRNSAHSLLEIINDILDFSKIEAGKLDLEAIDFDLRNTLEEA 381

Query: 319 ENLTP 323
            ++  
Sbjct: 382 SDIVA 386


>gi|291566313|dbj|BAI88585.1| two-component sensor histidine kinase [Arthrospira platensis
           NIES-39]
          Length = 655

 Score =  350 bits (899), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 96/655 (14%), Positives = 214/655 (32%), Gaps = 55/655 (8%)

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244
                        +   +    L          +  +            L   NK+    
Sbjct: 25  QEIADRLRVEEALRASSELLQTLINAIPDLVCFKDSQGRWLEANQAVLDLLQLNKIDYRG 84

Query: 245 EYYAHKDDVLKTEKY---------------PLLTSEESSLPEQEDFHTINLNQYTKKQYF 289
           +  A   D++K                         +    E+E     +          
Sbjct: 85  KTDAEIFDIIKHVNALSCYQKILLDSQCKDEKAWQLQKVYQEEEKIRQNDGILRIYDVMK 144

Query: 290 GTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSF 348
             L   +      +      +     +         V+            G +   N   
Sbjct: 145 VPLFTATGVRKGLVILGRDITAKKQAEADYIRLASMVESSEDAIIGNTLDGIIVSWNEGA 204

Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
             +  Y +V+ I     +  L + P        + +    +                   
Sbjct: 205 KQIYGYSAVEAIGSPISMLALPERPNEMP----RILTSITAQGGIDHYETIHVR---QDG 257

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468
            ++ ++       +   +    + I  +    +  +  +E    Q   IL++  +GI  +
Sbjct: 258 ANIDVSLTISPIKDALGQITGISMIARDISYRKRIECTLEQLRHQNELILDSAGEGICGL 317

Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP-----SVMNHYLT-----EILS 518
           NR+G I   N A +++ GY + +++        + +             L        L 
Sbjct: 318 NRDGKITFINPAGARMTGYDIRELIMSDLRQITKGHCRSQTPGEPHPDSLQPSPIFATLE 377

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAK 575
               + +        K+  +L +  +   +          +T  DI+E +  +       
Sbjct: 378 DGKVRYVTDGVFWR-KDGTILPVEYVSTPMRQEGAIIGAVITFKDITERQAME------- 429

Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
                    K +F++ VSHE+RTPLT+I G   +  +         +     +    + +
Sbjct: 430 -------KMKDEFISVVSHELRTPLTSIRGSLGL-LSSGLLASSPQKSERMLDIAMFNCD 481

Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695
            ++ +VND+LD+ ++ SG++ +    V++ + + +A   +   A +  + +         
Sbjct: 482 RLMRLVNDILDLERMHSGQLPMEKHWVNVADLMIQAADEMLPVAEKAGVDLCVV--PLEF 539

Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755
           +++ D   + Q+  N+LSN+I F+ +  +I  +     N  V++ VRD G G+   ++E 
Sbjct: 540 KVMVDRDRIIQMLTNLLSNSIRFSGANKRIDFTAKPQEN-HVLISVRDRGRGIPPDKIET 598

Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
               F Q+  S   +  GTGLGL + +++V  + GK +  S    G+   +  P+
Sbjct: 599 IFGRFQQVDASDSRQNGGTGLGLAICRSIVQQHGGKIWAESIFGDGSTFFVSLPI 653



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/393 (10%), Positives = 100/393 (25%), Gaps = 32/393 (8%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS----DILHIDPNNHIG--DLLKRQNTW 143
           D+ G   E ++ +   +        G    ++      +  +     I      K +  W
Sbjct: 59  DSQGRWLEANQAVLDLLQLNKIDYRGKTDAEIFDIIKHVNALSCYQKILLDSQCKDEKAW 118

Query: 144 YGKTTLWP----IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199
             +          +   +    D+  +P+++      G    G            A   R
Sbjct: 119 QLQKVYQEEEKIRQNDGILRIYDVMKVPLFTATGVRKGLVILG--RDITAKKQAEADYIR 176

Query: 200 LDKKFSHLHEI-----KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254
           L        +        G      E        S    +     + +L E       +L
Sbjct: 177 LASMVESSEDAIIGNTLDGIIVSWNEGAKQIYGYSAVEAIGSPISMLALPERPNEMPRIL 236

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
            +           ++  ++D   I+++  T       L   +  S           +   
Sbjct: 237 TSITAQGGIDHYETIHVRQDGANIDVSL-TISPIKDALGQITGISMIARDISYRKRIECT 295

Query: 315 FDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEI------AGGLS 367
            ++  +     +D        +   G + + NP+   +T Y   + I         G   
Sbjct: 296 LEQLRHQNELILDSAGEGICGLNRDGKITFINPAGARMTGYDIRELIMSDLRQITKGHCR 355

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
           +        D+    P+     D      +  +          L + ++      Q    
Sbjct: 356 SQTPGEPHPDSLQPSPIFATLEDGKVRYVTDGVFW--RKDGTILPVEYVSTPMR-QEGAI 412

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
           +       +  +    ++ ME    +  S++  
Sbjct: 413 IGAVITFKDITE----RQAMEKMKDEFISVVSH 441



 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/118 (11%), Positives = 33/118 (27%), Gaps = 17/118 (14%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS------------DILHIDPNNHIGDL 136
           ++  G +  I+    +  G    ++I   L  ++                + P+     L
Sbjct: 317 LNRDGKITFINPAGARMTGYDIRELIMSDLRQITKGHCRSQTPGEPHPDSLQPSPIFATL 376

Query: 137 LKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR 194
              +  +      W  +GT   +P++  + P+  +     G                 
Sbjct: 377 EDGKVRYVTDGVFWRKDGTI--LPVEYVSTPMR-QEGAIIGA--VITFKDITERQAME 429


>gi|192361097|ref|YP_001983812.1| two-component hybrid sensor and regulator [Cellvibrio japonicus
           Ueda107]
 gi|190687262|gb|ACE84940.1| two-component hybrid sensor and regulator [Cellvibrio japonicus
           Ueda107]
          Length = 761

 Score =  350 bits (899), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 108/642 (16%), Positives = 223/642 (34%), Gaps = 41/642 (6%)

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247
           RV      L +        +     G      +  ++   +     L       S     
Sbjct: 128 RVKQQSIQLERERKNLDLVIRGANMGTWQWNVQTGEVILNERWASILGFTLAELSPMSIQ 187

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFH-------TINLNQYTKKQYFGTLQNNSKESF 300
           A +  +   +      S E    E+ DF+         +            L    +   
Sbjct: 188 AWEHMIHPDDLPAARQSLEQHFAEEMDFYDSKFRMCHKDGTWVWVYTRGRVLSRTDQGEP 247

Query: 301 EYL-----SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG---NLFYANPSFLLLT 352
            ++                    E      +   P   +   +     + Y +P+   L+
Sbjct: 248 LWMFGTHADITELQVYQERLQASEERLQSMIRNFPGAVYRCENNPLWTMHYISPAIERLS 307

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
            Y   +     G +S  L      ++ A     +  +             +  +  +   
Sbjct: 308 GYLP-ESFMGDGAIS--LTQITHPEDIARHYYRVQMAVNRREPFDVVYRLLHRDG-SWRY 363

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-RE 471
           +  +     ++  +    +G   +       +  +++   +L S+ + +   IA+    +
Sbjct: 364 VQEVGTGIYDEQGQLQFLDGFIWDITQAEEARNAIQLNEQKLSSLYQLSPVAIALHRLAD 423

Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
           G  +  N    ++ GY  E+     +         +     L  +         EK  L 
Sbjct: 424 GAFVEGNPEFYRMLGYTAEEFPGLSYWDITPTEYAAAEMEQLESLHITGRYGPYEKHYL- 482

Query: 532 STKEEKLLSLRIIIKKLPFSSC---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
             K+   + + +    +  S         + DI+E K+ +                K++F
Sbjct: 483 -HKDGHQIPVLLNGVLIENSHREKQIWSIIQDITERKRIE--------------QMKNEF 527

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
           ++ VSHE+RTPLT+I G   +I N   G +   R  +      ++   +  ++NDLLD+ 
Sbjct: 528 VSAVSHELRTPLTSISGSLGLILNGMLGEVPV-RARDMLVIAHKNALRLAHLINDLLDME 586

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIA 708
           K+ +GK++ + +P ++   V ++I  ++ YA    + +          +  D + ++Q+ 
Sbjct: 587 KLAAGKLDFYMQPQAVLPIVEQSIESMRGYAENYGVSLVFDAVAGDASVNIDAQRLQQVL 646

Query: 709 LNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
            N LSNA+ F+P G ++I+        E+ L V D G G+++    +  + F Q   S  
Sbjct: 647 TNFLSNAVKFSPEGSRVILRMRVQ-GRELCLAVTDQGPGISDEFRTRIFQKFSQADASSS 705

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            +  GTGLGL ++K +V+   G     S P +G      FPL
Sbjct: 706 RQRGGTGLGLAISKELVERMGGNIGFDSIPGEGATFYACFPL 747



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 33/370 (8%), Positives = 93/370 (25%), Gaps = 31/370 (8%)

Query: 96  KEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ-----NTWYGKTTLW 150
             ++E     +G    ++  M +     ++H D        L++      + +  K  + 
Sbjct: 164 VILNERWASILGFTLAELSPMSIQAWEHMIHPDDLPAARQSLEQHFAEEMDFYDSKFRMC 223

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
             +GT  +V +      + SR  +      FG           +   +  +++   +   
Sbjct: 224 HKDGT--WVWVYTRGR-VLSRTDQGEPLWMFGTHADITELQVYQERLQASEERLQSMIRN 280

Query: 211 KKGHSSV--EKEKYDIFSQQSP-------PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
             G          + +              P   M +   SLT+    +D      +  +
Sbjct: 281 FPGAVYRCENNPLWTMHYISPAIERLSGYLPESFMGDGAISLTQITHPEDIARHYYRVQM 340

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS----HRNHPSLSAYFDE 317
             +              + +    ++    + +   +                       
Sbjct: 341 AVNRREPFDVVYRLLHRDGSWRYVQEVGTGIYDEQGQLQFLDGFIWDITQAEEARNAIQL 400

Query: 318 GENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
            E          P+   ++    G     NP F  +  Y + +      GLS     P  
Sbjct: 401 NEQKLSSLYQLSPVAIALHRLADGAFVEGNPEFYRMLGYTAEE----FPGLSYWDITPTE 456

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
                ++ +                  +  +      +      + +   + +    I  
Sbjct: 457 YAAAEMEQLESLHITGRYGPYEKHY--LHKDGHQIPVLLNGVLIENSHREKQI--WSIIQ 512

Query: 436 EDVDTRINKR 445
           +  + +  ++
Sbjct: 513 DITERKRIEQ 522



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/245 (12%), Positives = 77/245 (31%), Gaps = 14/245 (5%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK-RQNTWYGKTTL 149
           A G   E + E  + +G  A +  G+   D++   +        + L         +   
Sbjct: 422 ADGAFVEGNPEFYRMLGYTAEEFPGLSYWDITPTEYAAAEMEQLESLHITGRYGPYEKHY 481

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
              +G    +P+ L  + I + +RE    + + I+              + +   +  HE
Sbjct: 482 LHKDGHQ--IPVLLNGVLIENSHRE---KQIWSIIQDITERKRIEQ--MKNEFVSAVSHE 534

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
           ++   +S+      I +       +R ++ +       AHK+ +        L   E   
Sbjct: 535 LRTPLTSISGSLGLILNGMLGEVPVRARDML-----VIAHKNALRLAHLINDLLDMEKLA 589

Query: 270 PEQEDFHTINLNQYT-KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
             + DF+          +Q   +++  ++     L        ++   + + L     + 
Sbjct: 590 AGKLDFYMQPQAVLPIVEQSIESMRGYAENYGVSLVFDAVAGDASVNIDAQRLQQVLTNF 649

Query: 329 CPIPF 333
                
Sbjct: 650 LSNAV 654


>gi|328554527|gb|AEB25019.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens
           TA208]
 gi|328912933|gb|AEB64529.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens
           LL3]
          Length = 579

 Score =  350 bits (899), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 86/391 (21%), Positives = 167/391 (42%), Gaps = 28/391 (7%)

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
                     N +  + ++    +   +++  +L +++E    G+ +I+  G I   NR+
Sbjct: 208 RRSDRLGRAMNSLAVDLMEMTRTQ---DMQRDRLLTVIENIGSGLILIDGRGFINLVNRS 264

Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL---TEILSLDLRQTLEKITLGSTKEEK 537
            +K F    E +LR+ +    E      +   +          LR  +         +  
Sbjct: 265 YTKQFHTKPERLLRRLYHDAFEHEEIIRLVEDIFMTETKKCQLLRLPINIERRYFEVDGV 324

Query: 538 LLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
            +     +          L  HD++E K+ +                + DF+A VSHE++
Sbjct: 325 PI-----MGPDDEWKGIVLVFHDMTEIKKLE--------------QIRKDFVANVSHELK 365

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TP+T+I GF+E + +       +    ++ + I +    +  +V DLLD+SK+E     +
Sbjct: 366 TPITSIKGFTETLLDGAM--KDDKALSDFLSIILKESERLQSLVQDLLDLSKMEQQNFTM 423

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
             E     + + E  +L+Q  A EK I  +         +  D   +KQ+ LN+ +NA+ 
Sbjct: 424 RVESFDAAKILHEIEALLQHKAAEKGISFQLDLPEEPIFVTGDAHRLKQVFLNLANNALT 483

Query: 718 FTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
           +TP  G + IS        V ++V DTG+G+   E+ +  + F ++   +     GTGLG
Sbjct: 484 YTPEKGTVGISVNVKET-VVDIKVSDTGIGIQKEEIPRIFERFYRVDKDRSRNSGGTGLG 542

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           L + K +++A+ G   + S P +GT+  +  
Sbjct: 543 LAIVKHLIEAHEGHIEVTSEPGQGTVFTVTL 573


>gi|242278021|ref|YP_002990150.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens
           DSM 2638]
 gi|242120915|gb|ACS78611.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens
           DSM 2638]
          Length = 652

 Score =  350 bits (899), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 93/510 (18%), Positives = 197/510 (38%), Gaps = 29/510 (5%)

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
           +    +  +      +  P+    +   G +   N  F+ L    S + +     ++   
Sbjct: 3   TRERQKDIDHYRLIFEFSPLAMIRFDKTGTIIDCNQKFIDLMG-SSREKLIGFNTITRTT 61

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
                +   A         +           ++  N+   +   F P EK          
Sbjct: 62  PKMSAAVKQA--------VEGATSEYEDIYTSVTGNKTTYIRAVFNPIEKGK---NPTEV 110

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPV 489
                +  + +  + ++     +   + E T D I   +  +      + A   + GYP 
Sbjct: 111 IATLEDISERKRVEEELAKTEARFKIMAENTKDLIYYFSVPDKTFKYVSPACLDVTGYPP 170

Query: 490 E--DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
                  + F   +       M+    ++    +   +E   +    + K L    +   
Sbjct: 171 GTFYADSQFFFDMVHPEWQEFMHQQWMDMAHGKMSPLVEYQIIDRYGKTKWLQQSNVPFY 230

Query: 548 LPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
               +       + D++E K    ++ H K  AE  S  KS+FLA +SHEIRTPL  I+G
Sbjct: 231 DEEGNPIRVEGIVRDVTELKNALERVEHEKAKAETASRTKSEFLANMSHEIRTPLNGIMG 290

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
             ++++++       P+  EY N   ++   + ++++D+LD++++E+GK+NL+ +  +  
Sbjct: 291 MLQLMESE----TQTPKQGEYVNAAMQASKRLNNVLSDILDLARVEAGKLNLYNKEFNPA 346

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQ 724
           + +     L ++ +    + ++      +P  +  D   ++QI  NI+ NA+ FT  G  
Sbjct: 347 DELKHVFELFEVTSRHSGVNLKLKLPPELPLTVTGDPARLQQILTNIVGNALKFTHEG-H 405

Query: 725 IIISTTHTSNE-----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
           ++I+             ++  V DTGVG+ + ++    + F Q       + +G GLGL 
Sbjct: 406 VLITAQLLPRSTPGNCHILFTVEDTGVGIADDKMNLLFQSFTQASEGYTRQYQGAGLGLS 465

Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           + K + +   G   + S   +GT   I  P
Sbjct: 466 ICKRLTELMGGTIAVESNVEQGTTFYISIP 495


>gi|308174604|ref|YP_003921309.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens
           DSM 7]
 gi|307607468|emb|CBI43839.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens
           DSM 7]
          Length = 579

 Score =  350 bits (899), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 86/391 (21%), Positives = 167/391 (42%), Gaps = 28/391 (7%)

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
                     N +  + ++    +   +++  +L +++E    G+ +I+  G I   NR+
Sbjct: 208 RRSDRLGRAMNSLAVDLMEMTRTQ---DMQRDRLLTVIENIGSGLILIDGRGFINLVNRS 264

Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL---TEILSLDLRQTLEKITLGSTKEEK 537
            +K F    E +LR+ +    E      +   +          LR  +         +  
Sbjct: 265 YTKQFHTKPERLLRRLYHDAFEHEEIIRLVEDIFMTETKKCQLLRLPINIERRYFEVDGV 324

Query: 538 LLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
            +     +          L  HD++E K+ +                + DF+A VSHE++
Sbjct: 325 PI-----MGPDDEWKGIVLVFHDMTEIKKLE--------------QIRKDFVANVSHELK 365

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TP+T+I GF+E + +       +    ++ + I +    +  +V DLLD+SK+E     +
Sbjct: 366 TPITSIKGFTETLLDGAM--KDDKALSDFLSIILKESERLQSLVQDLLDLSKMEQQNFTM 423

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
             E     + + E  +L+Q  A EK I  +         +  D   +KQ+ LN+ +NA+ 
Sbjct: 424 RVESFDAAKILHEIEALLQHKAAEKGISFQLDLPEEPIFVTGDAHRLKQVFLNLANNALT 483

Query: 718 FTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
           +TP  G + IS        V ++V DTG+G+   E+ +  + F ++   +     GTGLG
Sbjct: 484 YTPEKGTVGISVNVKET-VVDIKVSDTGIGIQKEEIPRIFERFYRVDKDRSRNSGGTGLG 542

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           L + K +++A+ G   + S P +GT+  +  
Sbjct: 543 LAIVKHLIEAHEGHIEVTSEPGQGTVFTVTL 573


>gi|168702150|ref|ZP_02734427.1| multi-sensor hybrid histidine kinase [Gemmata obscuriglobus UQM
           2246]
          Length = 997

 Score =  350 bits (899), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 104/750 (13%), Positives = 217/750 (28%), Gaps = 70/750 (9%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNT--WYGK 146
            D    +   +    +     A   +G  + +      +             +T     +
Sbjct: 147 TDLDRRVTVFNPAAERMFRCPAGAALGRPVTEFVPDESL-------AAGAPGDTPPLAAR 199

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
              W +       P++++      R R F       IV             +R     S 
Sbjct: 200 PGAWGVRAGGKRFPVEVSVSRGDDRGRRFYTL----IVRDVTDRVRMEDELRRTAGLLSA 255

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPH---LRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
           + E       V+  +                  ++ +          D+  +   + L  
Sbjct: 256 VVEGTTDAVFVKDREGRYLLANPATAAFLRRPAEDIIGRTDAELMPPDEARQVRAHDLQA 315

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
                    E+   +   ++         +  S      +      +         +   
Sbjct: 316 MAADRAVSIEEQLVLGGTRHAFLSTKAAYRTASGAVVGVIGISRDVTERNRLATERDALL 375

Query: 324 ETVD----KCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
             +     + P+ + ++     +   NP+   +  Y   + +   G              
Sbjct: 376 ARLQLQIGRMPLAYVLFDTDLRIVDWNPAAERMFGYTREEALGRDG------LELAAPSF 429

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
                 +L R     +        ++ +    +   +      +          +  +  
Sbjct: 430 RPTAERLLGRIRGGDMTVHPVGENVRKDGRVIVCEWYN-TPLMDPDGRYTGLLSLGQDVT 488

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINRE--GI-ILSTNRAVSKLFGYPVEDILRK 495
                +  +          + A + GI I +    G  I+  +    +L GY   + L +
Sbjct: 489 ARVAAEEALRQRDR----AIHAVTQGIVITDARRPGHPIVFVSPGFERLTGYSAAEALGR 544

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-- 553
                  ++T       L + L  +   T+    L   K+       + +  +       
Sbjct: 545 NCRFLQGKDTDPAAVDRLRDALRDERACTV--ELLNYRKDGTAFWNELSLSPVRDGGDRV 602

Query: 554 --YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
             +   + D+++ +  + +   A+K+              ++H+    LT I GFSE+  
Sbjct: 603 TQFVGVLTDVTQRRALEEQFRQAQKM-----EAIGQLAGGIAHDFNNLLTVINGFSELTL 657

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
            Q      +         I  +G     +   LL  S+ E     +    + L+  V  A
Sbjct: 658 RQL---PTDDPCQPLVTEIRDAGERATRLTRKLLTFSRKE----VVEPVVLDLNATVDGA 710

Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST-- 729
             +++     + + +       + R+ AD   V+Q+ LN+  NA    P GG + + T  
Sbjct: 711 RGMLRWLL-GEGVRLVVKSDPRLDRVRADAGHVEQVILNLAVNARDAMPHGGTLTVGTAN 769

Query: 730 ----------THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
                        +   V L V DTGVGMT     K  +PF          G+GTGLGL 
Sbjct: 770 VTSDGPSGPGRVPAGRYVRLSVADTGVGMTEEIQAKIFEPFFTTKA----IGQGTGLGLS 825

Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
               +V    G   + S P +G   E+ FP
Sbjct: 826 TVYGIVQQTGGHIRVTSAPGRGATFEVYFP 855



 Score =  118 bits (297), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 46/420 (10%), Positives = 99/420 (23%), Gaps = 22/420 (5%)

Query: 176 SGFRGFGIVHVNRVDNDPRALGKRL-----DKKFSHLHEIKKGHSSVEKEKYDIFSQQSP 230
            G R F    +  +D  P A+G+ L     + + + + E  +           +      
Sbjct: 100 VGVRDFVTKSLEYLDYLPDAVGRVLGQVRTEHQLAGIIESARDAIISTDLDRRVTVFNPA 159

Query: 231 PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG 290
               RM    +         + V           +   L  +     +            
Sbjct: 160 AE--RMFRCPAGAALGRPVTEFVPDESLAAGAPGDTPPLAARPGAWGVRAGGKRFPVEVS 217

Query: 291 TLQNNSKESFEYL----SHRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYAN 345
             + + +    Y        +   +         L    V+      FV    G    AN
Sbjct: 218 VSRGDDRGRRFYTLIVRDVTDRVRMEDELRRTAGLLSAVVEGTTDAVFVKDREGRYLLAN 277

Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405
           P+     +  + D I         L  P  +       +    +DR        +     
Sbjct: 278 PATAAFLRRPAEDIIGR---TDAELMPPDEARQVRAHDLQAMAADRA-----VSIEEQLV 329

Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465
                 A               +   GI  +  +      + +  + +L   +       
Sbjct: 330 LGGTRHAFLSTKAAYRTASGAVVGVIGISRDVTERNRLATERDALLARLQLQIGRMPLAY 389

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
            + + +  I+  N A  ++FGY  E+ L +        +        L  I   D+    
Sbjct: 390 VLFDTDLRIVDWNPAAERMFGYTREEALGRDGLELAAPSFRPTAERLLGRIRGGDMTVHP 449

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
               +       +          P            D++     +  L    +     + 
Sbjct: 450 VGENVRKDGRVIVCEWYNTPLMDPDGRYTGLLSLGQDVTARVAAEEALRQRDRAIHAVTQ 509



 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 40/431 (9%), Positives = 102/431 (23%), Gaps = 18/431 (4%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            +  D  G     +      +   A  +IG    ++               L+       
Sbjct: 264 VFVKDREGRYLLANPATAAFLRRPAEDIIGRTDAELMPPDEARQVR--AHDLQAMAADRA 321

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF--GIVHVNRVDNDPRALGKRLDKK 203
            +    +                 + +    G  G    +   NR+  +  AL  RL  +
Sbjct: 322 VSIEEQLVLGGTRHAFLSTKAAYRTASGAVVGVIGISRDVTERNRLATERDALLARLQLQ 381

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
              +        +  +      + +    + R +       E  A             + 
Sbjct: 382 IGRMPLAYVLFDTDLRIVDWNPAAERMFGYTREEALGRDGLELAAPSFRPTAERLLGRIR 441

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
             + ++    +    +      + Y   L +        LS     +     +E      
Sbjct: 442 GGDMTVHPVGENVRKDGRVIVCEWYNTPLMDPDGRYTGLLSLGQDVTARVAAEEALRQRD 501

Query: 324 ETVDKCPIPFFVYSHGN----LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
             +        +         + + +P F  LT Y + + +    G +      K +D  
Sbjct: 502 RAIHAVTQGIVITDARRPGHPIVFVSPGFERLTGYSAAEAL----GRNCRFLQGKDTDPA 557

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
           A+  +     D         L   + +   +           +         G+  +   
Sbjct: 558 AVDRLRDALRDERACTVE--LLNYRKDG-TAFWNELSLSPVRDGGDRVTQFVGVLTDVTQ 614

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
            R  + +   +  ++ +I +    G    +   ++   N            D   +P   
Sbjct: 615 RRALEEQFR-QAQKMEAIGQLA--GGIAHDFNNLLTVINGFSELTLRQLPTDDPCQPLVT 671

Query: 500 FLEQNTPSVMN 510
            +         
Sbjct: 672 EIRDAGERATR 682



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/485 (8%), Positives = 102/485 (21%), Gaps = 54/485 (11%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTWYGKTTLWPI 152
           +  +S    +  G  A + +G   C        DP   + + D L+ +     +   +  
Sbjct: 523 IVFVSPGFERLTGYSAAEALGRN-CRFLQGKDTDPAAVDRLRDALRDERACTVELLNYRK 581

Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212
           +GT      +L+  P+       + F   G++             ++  K  +       
Sbjct: 582 DGTAF--WNELSLSPVRDGGDRVTQF--VGVLTDVTQRRALEEQFRQAQKMEAIGQLAGG 637

Query: 213 GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ 272
                      I             +                 T     L +       +
Sbjct: 638 IAHDFNNLLTVINGFSELTLRQLPTDDPCQPLVTEIRDAGERATRLTRKLLTFSRKEVVE 697

Query: 273 EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP 332
                +N      +     L             R    + A     E +           
Sbjct: 698 PVVLDLNATVDGARGMLRWLLGEGVRLVVKSDPRLD-RVRADAGHVEQVILNLAVNARDA 756

Query: 333 FFVYSHGNLFYAN--------------PSFLLL----TKYKSVDDIEIAGGLSTLLDAPK 374
                   +  AN                ++ L    T     ++I  A           
Sbjct: 757 MPHGGTLTVGTANVTSDGPSGPGRVPAGRYVRLSVADTGVGMTEEI-QAKIFEPFFTTKA 815

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
           +     +    +Y            +         +    + P    +            
Sbjct: 816 IGQGTGLGLSTVY---GIVQQTGGHIRVTSAPGRGATFEVYFPSAGRDPADAQAAHAAEP 872

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
                                         + ++  +  +    R   + FGY V D   
Sbjct: 873 GGPTGRGT----------------------VLVVEDDDRVRRLARIALQRFGYTVLDAPS 910

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554
               + + +     ++  LT+++   +        +   +    + +  +      +   
Sbjct: 911 AEEALRVCERPEPPIDLLLTDVVMPGMGGRELAEVVARLRPG--IKVLYVSGYADDAVVR 968

Query: 555 SLTMH 559
              + 
Sbjct: 969 HGVLR 973


>gi|332532401|ref|ZP_08408279.1| sensor histidine kinase/response regulator [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332038044|gb|EGI74491.1| sensor histidine kinase/response regulator [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 936

 Score =  350 bits (899), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 115/508 (22%), Positives = 212/508 (41%), Gaps = 23/508 (4%)

Query: 314 YFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
              +                 +    G + + N SF +LT +   + +  + G   LL  
Sbjct: 142 QQQKYVKRLSLVASHTNNLVIITDKFGVIEWVNKSFEVLTGFTCDEVVGTSPG--QLLQG 199

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
           PK  + +     ++  + R  +           N  N   +        +   +      
Sbjct: 200 PKTCEKSRK---VMSHAVRNGLPFQVETINYDKNG-NVYWVAIDANPVRDDEGQVKHFIA 255

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
           IE         ++ M        S+++   D +  ++  G +L  N+A  ++    V + 
Sbjct: 256 IETNITQRVKAEQAMAEIEYNYHSVVDNIPDIVLRLDTFGNLLFINQAWQRVLQSNVNES 315

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS- 551
           L  P   F+ +     ++  L +  +   R            +     + I +  +    
Sbjct: 316 LGLPIIKFIAKEDVEKISSTLLDY-NQGKRDIRRFDIRLINAQGINNWVEITLTPIVGGY 374

Query: 552 ----SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
               S  + T+ DI E  + +  L  AK  AE  +  KS F+A +SHEIRTPL A+IG +
Sbjct: 375 ESDLSSIAATLVDIQERIESEQILLEAKHQAETLAESKSRFMANISHEIRTPLNAVIGSA 434

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
           +++ +           + Y   I  S + +L +++D+L  S+ E+  + L  +P S+D  
Sbjct: 435 DILHHTGLTS----EQMRYTQMIKTSSDALLSVLDDVLTYSRFEAQAITLDNQPFSIDTC 490

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII 726
           + EAI ++   A +KR+ +   F  ++P +++ D   V+QI +N+L+NAI FT  G  I 
Sbjct: 491 IEEAIDIITQSALQKRLEVIFDFYPDVPAQVIGDHARVRQIVINLLANAIKFTQHG-VIT 549

Query: 727 ISTTHTS----NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
           ++   T     N  + L V+DTG+G+   ++E    PF Q  NS   +  G+GLGL + K
Sbjct: 550 VTVRCTHIKGNNLNLHLSVKDTGMGIAKNKIESMFMPFIQSDNSITRKHGGSGLGLAICK 609

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            + D   G   + S   KG+   + +PL
Sbjct: 610 QICDVVGGDISVSSELNKGSEFIVNYPL 637



 Score = 73.1 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/264 (11%), Positives = 82/264 (31%), Gaps = 17/264 (6%)

Query: 318 GENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
                 + +       F      N  Y N ++     Y +   I     ++ L++   + 
Sbjct: 22  SNRRQAKLLAILDECIFECDKHLNFTYINEAWEKKLGYSNDSLIGSN--ITKLMNCEDIM 79

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
              A    +L           A    IQ      L   F      ++    +        
Sbjct: 80  HFVAYSCCLLEGKQ-------APSVEIQIKNSLGLMNWFELRLVYDEKSGFIGSFYDIQR 132

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             D++    + +  V +L  +   T++ + I ++ G+I   N++   L G+  ++++   
Sbjct: 133 HKDSQFLLTQQQKYVKRLSLVASHTNNLVIITDKFGVIEWVNKSFEVLTGFTCDEVVGTS 192

Query: 497 FTVFLE-QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-- 553
               L+   T       ++  +   L    +  T+   K   +  + I    +       
Sbjct: 193 PGQLLQGPKTCEKSRKVMSHAVRNGLP--FQVETINYDKNGNVYWVAIDANPVRDDEGQV 250

Query: 554 --YSLTMHDISEWKQEKNKLSHAK 575
             +     +I++  + +  ++  +
Sbjct: 251 KHFIAIETNITQRVKAEQAMAEIE 274



 Score = 65.8 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/385 (10%), Positives = 101/385 (26%), Gaps = 20/385 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            +  D H     I+E   K +G     +IG  +  + +   I         L        
Sbjct: 37  IFECDKHLNFTYINEAWEKKLGYSNDSLIGSNITKLMNCEDIMHFVAYSCCLLEGKQAPS 96

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
                      L    +L    +Y     F G   F  +  ++         ++  K+ S
Sbjct: 97  VEIQIKNSL-GLMNWFELRL--VYDEKSGFIG--SFYDIQRHKDSQFLLTQQQKYVKRLS 151

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDD---VLKTEKYP 260
            +         +  +   I         L     ++V   +     +         +   
Sbjct: 152 LVASHTNNLVIITDKFGVIEWVNKSFEVLTGFTCDEVVGTSPGQLLQGPKTCEKSRKVMS 211

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
                      +   +  N N Y        ++++  +   +++   + +     ++   
Sbjct: 212 HAVRNGLPFQVETINYDKNGNVYWVAIDANPVRDDEGQVKHFIAIETNITQRVKAEQAMA 271

Query: 321 LTP----ETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
                    VD  P         GNL + N ++  + +    + + +         A + 
Sbjct: 272 EIEYNYHSVVDNIPDIVLRLDTFGNLLFINQAWQRVLQSNVNESLGLPIIK---FIAKED 328

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
            +  +   +   +  R       RL  I     N+     +         +         
Sbjct: 329 VEKISSTLLDYNQGKRDIRRFDIRL--INAQGINNWVEITLTPIVGGYESDLSSIAATLV 386

Query: 436 EDVDTRINKRKMEIEVMQLCSILEA 460
           +  +   +++ +     Q  ++ E+
Sbjct: 387 DIQERIESEQILLEAKHQAETLAES 411



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 46/134 (34%), Gaps = 6/134 (4%)

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
               +L +IL+   + I   ++       N A  K  GY  + ++    T  +       
Sbjct: 24  RRQAKLLAILD---ECIFECDKHLNFTYINEAWEKKLGYSNDSLIGSNITKLMNCEDIMH 80

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568
              Y   +L      ++E     S        LR++       S +  + +DI   K  +
Sbjct: 81  FVAYSCCLLEGKQAPSVEIQIKNSLGLMNWFELRLV---YDEKSGFIGSFYDIQRHKDSQ 137

Query: 569 NKLSHAKKIAEKES 582
             L+  +K  ++ S
Sbjct: 138 FLLTQQQKYVKRLS 151


>gi|331015224|gb|EGH95280.1| two-component sensor/regulator [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 576

 Score =  350 bits (898), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 122/571 (21%), Positives = 216/571 (37%), Gaps = 55/571 (9%)

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF---------VYSHGNLFYANPSF 348
              ++ +           +     T           F            HG +   N   
Sbjct: 4   PPVDHPTTETQSRAEKIVESRRQKTLLKTGALQDAIFNSAYFSSIATDEHGVIQIFNVGA 63

Query: 349 LLLTKYKSVDDIEIAGGLS-----TLLDAPKLSDNNAIKPVM-----LYRSDRTCIAASA 398
             +  Y S D ++            L+       +    P+      L       I    
Sbjct: 64  ERMLGYHSEDVVDKITPADISDPAELIIRAAALSHELNTPITPGFEALVFKASRGIEDIY 123

Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK-------RKMEIEV 451
            L  I+ +     AM        +     +    I  ++   +  +       +++  + 
Sbjct: 124 ELTYIRKDGSRLSAM-VSVTSLRDSAETIIGYLLIGTDNTARKQEEETQALLDQRLRDQQ 182

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
               S++E+  D + + + +GII   N+ +  L G   ++++  P   F     P+  + 
Sbjct: 183 FYTRSLIESNIDALMMTDPQGIISDVNKQMMALTGRTRDELIGAPCKNFF--TDPASADA 240

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKN 569
            +  +LS       E         E ++S                     D++E K+ + 
Sbjct: 241 AIKRVLSEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRKLKGVFAAARDVTERKRFER 300

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
            L       E  S  KS+FLA +SHE+RTPL A+IGFSE +K+   G + +     Y   
Sbjct: 301 TLEEKNIELEHASHMKSEFLATMSHELRTPLNAVIGFSEALKDGMVGDMTDA-QRRYIGD 359

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I  SG  +L ++ND+LD+SK+E+G M L  E V LDE +S ++ +V+  A  +RI ++  
Sbjct: 360 IFNSGQHLLSLINDILDLSKVEAGMMLLELEAVDLDELLSNSLLIVREQAALQRIQLKLE 419

Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV------------ 737
              +   +  D R  KQI  N+L+NA+ F+  GG + ++    S  +V            
Sbjct: 420 TEADFGVLELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRQVSRAQVGILDGDWPVHSF 479

Query: 738 -----------ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
                       + V DTG+G+   ++ K  K F QI +S   + EGTGLGL + K + +
Sbjct: 480 SLPPSDYEHFLQVSVSDTGIGIAQSDMNKLFKAFSQIDSSLARKFEGTGLGLAMVKQLTE 539

Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
            + G   + S    G    +  P+   +   
Sbjct: 540 LHGGCVAVASVKDLGARFVVWLPIRTPATEE 570



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/230 (11%), Positives = 63/230 (27%), Gaps = 7/230 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            D  G + ++++++    G    ++IG    +         +  I  +L        + T
Sbjct: 199 TDPQGIISDVNKQMMALTGRTRDELIGAPCKNFFTDP-ASADAAIKRVLSEHKVSDYELT 257

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           +   +GT     +   A   + R+R+  G   F                +  + +  H  
Sbjct: 258 VRAYDGTETV--VSYNAATFHDRDRKLKGV--FAAARDVTERKRFERTLEEKNIELEHAS 313

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK-VSSLTEYYAHKDDVLKTEKYPLLTSEES 267
            +K    +    +              +K+  V  +T+        +      LL+    
Sbjct: 314 HMKSEFLATMSHELRTPLNAVIGFSEALKDGMVGDMTDAQRRYIGDIFNSGQHLLSLIND 373

Query: 268 SLP-EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
            L   + +   + L             +      +    R    L    D
Sbjct: 374 ILDLSKVEAGMMLLELEAVDLDELLSNSLLIVREQAALQRIQLKLETEAD 423



 Score = 45.0 bits (105), Expect = 0.050,   Method: Composition-based stats.
 Identities = 24/265 (9%), Positives = 65/265 (24%), Gaps = 26/265 (9%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGM-RLCDVSDILHI------------DPNNHIGD 135
            D HG ++  +    + +G ++  ++      D+SD   +             P     +
Sbjct: 50  TDEHGVIQIFNVGAERMLGYHSEDVVDKITPADISDPAELIIRAAALSHELNTPITPGFE 109

Query: 136 LL----KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN 191
            L     R      + T    +G+   +   ++   +        G+   G  +  R   
Sbjct: 110 ALVFKASRGIEDIYELTYIRKDGS--RLSAMVSVTSLRDSAETIIGYLLIGTDNTARKQE 167

Query: 192 DP-----RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSSLT 244
           +          +        L E       +   +  I            R ++++    
Sbjct: 168 EETQALLDQRLRDQQFYTRSLIESNIDALMMTDPQGIISDVNKQMMALTGRTRDELIGAP 227

Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
                 D          + SE      +      +  +        T  +  ++     +
Sbjct: 228 CKNFFTDPASADAAIKRVLSEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRKLKGVFA 287

Query: 305 HRNHPSLSAYFDEGENLTPETVDKC 329
                +    F+         ++  
Sbjct: 288 AARDVTERKRFERTLEEKNIELEHA 312


>gi|224370417|ref|YP_002604581.1| multidomain fusion protein (N:DNA-binding domain/C:signal
           transduction histidine kinase) [Desulfobacterium
           autotrophicum HRM2]
 gi|223693134|gb|ACN16417.1| multidomain fusion protein (N:DNA-binding domain/C:signal
           transduction histidine kinase) [Desulfobacterium
           autotrophicum HRM2]
          Length = 772

 Score =  350 bits (898), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 118/397 (29%), Positives = 187/397 (47%), Gaps = 33/397 (8%)

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
           E E+ +L   +E +   + I +  G I   N    ++ GY V ++L +   V        
Sbjct: 228 EEEIRKLLRAVEESPSSVVITDAFGAIEYVNTKFCEVTGYTVSEVLGQNPRVLNSDIQSK 287

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISE 563
                + E LS               K+  L      I  L  +      Y     D++E
Sbjct: 288 AFYREMWETLSQGQEWRG--EFCNKKKDGTLYWEHASISPLCDARGNITHYVAVKEDVTE 345

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            K+   +L  A++ AE  +  KSDFL  +SHE+RTPL AIIGFSEV++++ FGPL + + 
Sbjct: 346 TKRILQELEKAREAAEVSNIAKSDFLTSMSHELRTPLNAIIGFSEVLQDRFFGPLTD-KQ 404

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            EY + I  +G  +L ++ND+LD+SK+E+GKM L  + V + +A+   + +++       
Sbjct: 405 SEYLDDILGAGQHLLSLINDILDLSKVEAGKMMLEIKSVKVSDAIETGLVMLKEKIACHG 464

Query: 684 ILIRTSFANNIPRIL--ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE------ 735
           I ++T F     ++   AD R +KQI  NILSNA+ FTP GG I I       +      
Sbjct: 465 ITVKTDFKETCHKLTLAADERKLKQIIFNILSNAVKFTPDGGTITIEMMVLDPDPIPGTD 524

Query: 736 -----------------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
                             +I+ + DTG+G+++ +L    + F Q     +    GTGLGL
Sbjct: 525 ILPDWMQKATGQVGKQPHLIISIADTGIGISSEDLPHIFEEFYQTLAGIRASTPGTGLGL 584

Query: 779 PLAKAMVDANMGKFYIFST-PAKGTLIEIIFPLYDTS 814
           PL+K M + + G     S  P KG+   ++ PL   S
Sbjct: 585 PLSKRMAELHGGTIMAHSEGPDKGSRFTLLMPLMTVS 621



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/239 (10%), Positives = 67/239 (28%), Gaps = 22/239 (9%)

Query: 43  NPCHDSFEQSNFTDQ----NQESVSNTNYLDSENTF-----VFDPIPRTVRFTWN----- 88
            P      Q   T      N E  +  +   S   F       + I + +R         
Sbjct: 186 PPVSQKVSQPAGTCSCRLCNLEDTTEASTAHSTPPFFMNGRPEEEIRKLLRAVEESPSSV 245

Query: 89  --IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYG 145
              DA G ++ ++ +  +  G    +++G     ++  +        + + L +   W G
Sbjct: 246 VITDAFGAIEYVNTKFCEVTGYTVSEVLGQNPRVLNSDIQSKAFYREMWETLSQGQEWRG 305

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +      +GT        +  P+       + +    +              ++  +   
Sbjct: 306 EFCNKKKDGTLY--WEHASISPLCDARGNITHY--VAVKEDVTETKRILQELEKAREAAE 361

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK-VSSLTEYYAHKDDVLKTEKYPLLT 263
             +  K    +    +              ++++    LT+  +   D +      LL+
Sbjct: 362 VSNIAKSDFLTSMSHELRTPLNAIIGFSEVLQDRFFGPLTDKQSEYLDDILGAGQHLLS 420


>gi|20091183|ref|NP_617258.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
 gi|19916292|gb|AAM05738.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
          Length = 725

 Score =  350 bits (898), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 111/385 (28%), Positives = 193/385 (50%), Gaps = 8/385 (2%)

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
           GI     D  ++++++     +  ++L +  + +  ++ E  I  TN  VS+ FG   E 
Sbjct: 341 GINSMLQDLELSQKEVMHRESEKHALLNSLIEVLIYLDSELKIAWTNNKVSEYFGEKTEA 400

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
           I  +     L  +   ++  ++ + L+    Q+ E            +   + I  +   
Sbjct: 401 ITGRT-HHELWGDKNPILAPFVRKALNNGKTQSFEINVSDKDSWTGEIW-SVTIGSVRDR 458

Query: 552 SCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
               +    ++ DI+E K+ + K+  AK +AE  +  KS+FL+ +SHE+RTPL A+IGF+
Sbjct: 459 DGKLIGTIESILDITEVKKSEEKMLQAKILAENSNRSKSEFLSNMSHELRTPLNAVIGFA 518

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
           +++  + FGPL N +   +   I  SG  +L ++N++LD+SKIE+GKM       S+ E 
Sbjct: 519 DILNEEGFGPL-NKKQKRFVGNISTSGKHLLKLINEILDLSKIEAGKMEFKCTEFSVKEK 577

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727
             E   ++    ++K+I I     + I  I +D     Q+  N++SNAI FT  GG + +
Sbjct: 578 FDEIKDILFPVFSKKKIRIEFEIGDGITTIYSDEGKFVQVLYNLVSNAIKFTEEGGFVKV 637

Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
           S      + + L V+DTG+G+T  +L K   PF Q+ +    + EGTGLGL L   MV  
Sbjct: 638 SARKN-GDMLQLSVKDTGIGITEEDLMKIFHPFVQVDSFSTRQYEGTGLGLALVDQMVQL 696

Query: 788 NMGKFYIFSTPAKGTLIEIIFPLYD 812
             G+  +FS P  G+    + PL +
Sbjct: 697 MGGEICVFSQPGIGSEFICMIPLKN 721



 Score = 43.9 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 9/137 (6%), Positives = 33/137 (24%), Gaps = 3/137 (2%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D+   +   + ++ +  G     + G    ++    +      +   L    T   +  
Sbjct: 377 LDSELKIAWTNNKVSEYFGEKTEAITGRTHHELWGDKNPILAPFVRKALNNGKTQSFEIN 436

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           +   +     +        +  R+ +  G      +              +      + +
Sbjct: 437 VSDKDSWTGEIWSVTIGS-VRDRDGKLIGT--IESILDITEVKKSEEKMLQAKILAENSN 493

Query: 209 EIKKGHSSVEKEKYDIF 225
             K    S    +    
Sbjct: 494 RSKSEFLSNMSHELRTP 510


>gi|291568228|dbj|BAI90500.1| two-component hybrid sensor and regulator [Arthrospira platensis
           NIES-39]
          Length = 1336

 Score =  350 bits (898), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 90/389 (23%), Positives = 160/389 (41%), Gaps = 23/389 (5%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP-------VEDILRKPF 497
           R++      L   LEA   G+ + ++ G I   N+ +  LF +         +       
Sbjct: 436 RQLYDREYWLKQFLEALPVGVLVYDKNGNIYYANQKLKDLFRHEHIPEVSLEDFAGINNL 495

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY--S 555
            +             L   L   +             +    SL          +     
Sbjct: 496 YLNGTDQVYPTKALPLIRALKGKIVPIENIEIRHPD-QTICCSLMATPIFDSDEAIVYGI 554

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSH-------KSDFLARVSHEIRTPLTAIIGFSE 608
               DI++ +Q + +  +  K  ++++         K +FLA  SHE+RTPL  +IG SE
Sbjct: 555 AVFEDITQRRQAEMERQNFTKQLKEKNDALKRMDELKDEFLANTSHELRTPLNGMIGLSE 614

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
            + +   GPL      +  + I +SG+ +  +VND+LD SK+    + L  +P+ L E V
Sbjct: 615 SMLDGVGGPLT-ELQRQNLSMIAKSGHRLSTLVNDILDFSKLRHQTLELKLQPLGLREIV 673

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
              + L +     K I +      + P + AD   ++QI  N++ NAI FT SG  + I+
Sbjct: 674 EVIVVLSKPLIGNKDIELINEIPADFPAVNADENRLQQILYNLIGNAIKFTDSG-TVKIT 732

Query: 729 TTHTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
            +    E      ++ + DTG+G+   +  +  + F Q   S   +  GTGLGL + K +
Sbjct: 733 ASVLDTEVNHSTAVINIYDTGIGIPPDKHHRIFESFEQGDGSTARQYGGTGLGLAITKQL 792

Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
           V+ + GK ++ S    G+      P+ + 
Sbjct: 793 VELHQGKIWLDSVVDSGSTFSFTLPISEE 821



 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/218 (9%), Positives = 62/218 (28%), Gaps = 6/218 (2%)

Query: 241 SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF 300
             +         ++   K     ++              + +  +       Q     S 
Sbjct: 364 IGMFMARRVTRPLVNLNKAARKFAQGDWEHSVNISRCQEVGELAQSFNQMAAQIRQSFSE 423

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDD 359
               +    +L+    + E    + ++  P+   VY  +GN++YAN     L +++ + +
Sbjct: 424 LEEQNNISKALNRQLYDREYWLKQFLEALPVGVLVYDKNGNIYYANQKLKDLFRHEHIPE 483

Query: 360 --IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
             +E   G++ L               ++       +        I+   +     + + 
Sbjct: 484 VSLEDFAGINNLYLNGTDQVYPTKALPLIRALKGKIVPIENI--EIRHPDQTICC-SLMA 540

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
               +     +    +  +    R  + + +    QL 
Sbjct: 541 TPIFDSDEAIVYGIAVFEDITQRRQAEMERQNFTKQLK 578


>gi|317052667|ref|YP_004113783.1| PAS sensor protein [Desulfurispirillum indicum S5]
 gi|316947751|gb|ADU67227.1| PAS sensor protein [Desulfurispirillum indicum S5]
          Length = 753

 Score =  350 bits (898), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 98/632 (15%), Positives = 213/632 (33%), Gaps = 21/632 (3%)

Query: 190 DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH 249
                 L     +    L     G      +  +++        L  ++     +     
Sbjct: 127 QKRKEELLANRQRWQFALEGTNIGVWDWNIQSSEVYFSPRWKEILGYRDHELPNSLEQWQ 186

Query: 250 KD------DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL-QNNSKESFEY 302
           +         +     P  +  +     +      + N          +           
Sbjct: 187 QRIHPDDYQRVMQAHEPAFSKSDRLYRSEYRLRHRDGNYRWISSQGKVMSWARDGTPLRM 246

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIE 361
           +      +     +E +      ++       + +  G + + N     +   +  +D+ 
Sbjct: 247 IGTHADITERKILEEQQERMVRILEATTDSVNIATPDGTMIFWNSHGRAMVGVEPDEDVT 306

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                  L   PK         +    ++      +     I      ++ +T +     
Sbjct: 307 AISF--DLFHPPKSLKILTRVAIPSAITNGIWQGENV----ITNRHGKTIPVTQVIIAHR 360

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
           +Q       + I  +    +  +  +     +L  +LE+T  G+ IIN  G I   N A+
Sbjct: 361 DQQGNLEYLSSIMRDMSPQKKVEEALRSSEQRLWRLLESTPLGVVIINSCGTIEWVNPAM 420

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS- 540
                Y  E +     T  L + +    + +  +  +     + E   +    E  L   
Sbjct: 421 CHKVHYHFESLAGHSLTKILPEESRMAWHQWFEQFGNAHTSSSEEWKFVRRGGESFLAEI 480

Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
           +                + DI++ K+ +++L  + +  E+ +  KS F+  VSHE RTPL
Sbjct: 481 VSTSFADTSGQWRMVAYVTDITKRKRFEDELLRSLRQQEELNELKSTFVQMVSHEFRTPL 540

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
             I+G +E +  +    L   R  E+ + I      ++ ++ ++L +  ++SG+ N    
Sbjct: 541 AGIMGSAE-LLKKYLERLSPERRDEHLDTILSGVQRMVFMMEEILALGAMDSGQTNFSPS 599

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720
           PV L          +      +RI +          +  D   +  I  N+LSNA+ ++P
Sbjct: 600 PVDLVAMCRAIQDQLHSIFPGQRIQLDFRDIPTCAML--DESLLHHILTNLLSNALKYSP 657

Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
           +   +  S    + +E+  RV D G+G+   +  +  + F +   S     +GTG+G+ +
Sbjct: 658 ATSPVHFSI-FNTTKELCFRVTDFGIGIPESDRGRLFEAFFR--GSNASHIQGTGIGMMI 714

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
            K  +D + G   I S P +G+   +  PL  
Sbjct: 715 VKRCLDLHNGTIQIQSKPNQGSTFTVTIPLSQ 746



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 41/519 (7%), Positives = 115/519 (22%), Gaps = 54/519 (10%)

Query: 96  KEISEELPKTIGNYAFKM--IGMRLCDVSDILHIDPNNHIGD-LLKRQNTWYGKTTLWPI 152
              S    + +G    ++     +                 +    + +  Y        
Sbjct: 161 VYFSPRWKEILGYRDHELPNSLEQWQQRIHPDDYQRVMQAHEPAFSKSDRLYRSEYRLRH 220

Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212
              N         +  ++R+      R  G               +R+ +      +   
Sbjct: 221 RDGNYRWISSQGKVMSWARDGTP--LRMIGTHADITERKILEEQQERMVRILEATTDSVN 278

Query: 213 GHSSVEKEKYDIFSQQSPPPHLRMKN-KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271
             +      +     ++       ++    S   ++  K   + T               
Sbjct: 279 IATPDGTMIFWNSHGRAMVGVEPDEDVTAISFDLFHPPKSLKILTRVAIPSAITNGIWQG 338

Query: 272 QEDFHTINLNQYTKKQYFGTLQNNSKE----SFEYLSHRNHPSLSAYFDEGENLTPETVD 327
           +      +       Q     ++        S           +       E      ++
Sbjct: 339 ENVITNRHGKTIPVTQVIIAHRDQQGNLEYLSSIMRDMSPQKKVEEALRSSEQRLWRLLE 398

Query: 328 KCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
             P+    + S G + + NP+      Y   + +        L +  +++ +   +    
Sbjct: 399 STPLGVVIINSCGTIEWVNPAMCHKVHY-HFESLAGHSLTKILPEESRMAWHQWFEQFGN 457

Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
             +  +          ++   E+ LA                       +    +  + +
Sbjct: 458 AHTSSSEEW-----KFVRRGGESFLAEIVS--TSFADTSGQWRMVAYVTDITKRKRFEDE 510

Query: 447 M------EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK-LFGYPVEDILRKPFTV 499
           +      + E+ +L S                 +   +      L G      L K +  
Sbjct: 511 LLRSLRQQEELNELKSTF---------------VQMVSHEFRTPLAGIMGSAELLKKYLE 555

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL-------------LSLRIIIK 546
            L           +   +   +    E + LG+    +               +++  + 
Sbjct: 556 RLSPERRDEHLDTILSGVQRMVFMMEEILALGAMDSGQTNFSPSPVDLVAMCRAIQDQLH 615

Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
            +       L   DI         L H        ++ K
Sbjct: 616 SIFPGQRIQLDFRDIPTCAMLDESLLHHILTNLLSNALK 654


>gi|20809032|ref|NP_624203.1| sensory transduction histidine kinase [Thermoanaerobacter
           tengcongensis MB4]
 gi|20517703|gb|AAM25807.1| Sensory transduction histidine kinases [Thermoanaerobacter
           tengcongensis MB4]
          Length = 577

 Score =  350 bits (898), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 88/370 (23%), Positives = 163/370 (44%), Gaps = 41/370 (11%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +     ++ E  ++ +I++   DG+   +  G I+  N A  K+    +   L  P    
Sbjct: 243 KETLNDIQGEKNKIEAIIKFMKDGVVAADANGNIIHYNEAAEKMLNKKLS--LGMPVEEV 300

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMH 559
           L                               T + ++L +     K+      Y   MH
Sbjct: 301 LPLKEAENPIPM--------------------TCDNRVLMINAASVKINNQVEGYVYVMH 340

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           DI+E  +                  + +F+A VSHE+RTPL  I  + E +    +  + 
Sbjct: 341 DITEQHKL--------------DQMRKEFVANVSHELRTPLATIKSYVETLL---YNDVD 383

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
                ++   I+   + +  +V DLL +SK++S + +L  EP   +E V   ++ + + A
Sbjct: 384 TEYSKKFLRIIETETDRMTRLVKDLLLLSKMDSEENSLKLEPCDFNEIVKNVVNSLSIEA 443

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
            +K   +  + +  + ++  D   V+Q+A+NI++NAI +TP GG I IST +     V  
Sbjct: 444 TKKGHNVILNLSETLQKVNVDKDKVEQMAMNIINNAIKYTPEGGVIEISTAYDEEG-VTF 502

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V+D G+G+   +L +  + F ++  ++     GTGLGL + K +V+ + GK  I S   
Sbjct: 503 TVKDNGIGIPKEDLPRIFERFYRVDKARSRELGGTGLGLSIVKQIVELHKGKVKIESELG 562

Query: 800 KGTLIEIIFP 809
           KGT++ +  P
Sbjct: 563 KGTVVTVQLP 572


>gi|307266331|ref|ZP_07547870.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918638|gb|EFN48873.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 568

 Score =  350 bits (898), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 84/373 (22%), Positives = 161/373 (43%), Gaps = 41/373 (10%)

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
           +  +     ++ E  ++ +I++  +DG+   + +G I+  N A  K+    +E  L  P 
Sbjct: 234 LRLKQTLNDIQGEKNKIEAIIQFMTDGVVATDAKGNIIHYNEAAEKMLNVKLE--LGMPI 291

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSL 556
              L       +                           K+L++ I   K       Y  
Sbjct: 292 EGILNLEKEDAVATM--------------------NCGNKVLTVNIAPLKSNQQIEGYVY 331

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            +HDI+E  +                + + +F+A VSHE+RTPL  I  + E +    + 
Sbjct: 332 VLHDITEQHKL--------------DAMRKEFVANVSHELRTPLATIKSYVETLL---YS 374

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
            +       +   ID   + +  +V DLL +SK++S   NL FE  +L+E + + I+ + 
Sbjct: 375 DVDAEYLKRFLKIIDSETDRMTRLVKDLLLLSKMDSEDKNLKFEHKNLNEVIIDVINRLS 434

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
           + A++K   +          +  D   ++Q+ +N+++NAI +TP  G I + T +     
Sbjct: 435 IEAHKKNQKLIVDLQETPRHVYIDKDKMEQVIVNLVTNAIKYTPENGMIKVMTEY-DENF 493

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
               V D G+G+   +L +  + F ++  ++     GTGLGL + K +V+ + G+  I S
Sbjct: 494 ATFIVEDNGIGIPKEDLPRIFERFYRVDKARSRELGGTGLGLSIVKQIVELHKGEVNIES 553

Query: 797 TPAKGTLIEIIFP 809
              KGT++ +  P
Sbjct: 554 EVGKGTIVRVKLP 566


>gi|83643693|ref|YP_432128.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83631736|gb|ABC27703.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 1263

 Score =  350 bits (898), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 132/736 (17%), Positives = 255/736 (34%), Gaps = 62/736 (8%)

Query: 116 MRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNRE- 174
            R  + +  L  D    + ++            ++P++G    + +DL+A P      E 
Sbjct: 104 ERFTEFAYPL-FDGRAQLRNIGAAPGMVIR--LVYPLQGNEGAIGLDLSATPDQREAAEQ 160

Query: 175 ---------------FSGFRGF----GIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHS 215
                            G  GF     +   +      R  G           +     S
Sbjct: 161 ARTSGQPLVTGPVKLVQGGYGFIGRIPVFTYSDSGKKERFWGLVSAVID---VDQLYKAS 217

Query: 216 SVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDF 275
            +      +        +    + +        H D V+     P  +    + P+   +
Sbjct: 218 GLTGAAQRLDIAIRSAYNSDTDSDIFYGDPAVFHTDPVIAEVTLPNGSWRIGATPKGG-W 276

Query: 276 HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV 335
             +  +    +    T+          +  +          E E L     D  P+   +
Sbjct: 277 PQLAEDAIALRVSVLTIGLLILAPTVLVFRQMRKR-----HENEMLLRSLFDLSPLGIAL 331

Query: 336 YS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393
                G+    N + L  T Y   + + ++         PK  +    + +         
Sbjct: 332 NDYKTGDFLEINNALLGPTGYTRKEFLMLSYWD----ITPKDYEKEESQQLKQLSIRGRY 387

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
                    I+ N E    +         Q  E +    I  +  + +  +        Q
Sbjct: 388 GPYEKEY--IRKNGERYPVLLNGVLISDTQGREYI--WSIIEDITERKQAEAASRAARQQ 443

Query: 454 -------LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
                  L +  + +++ + I N+EG     N   SK+ GY   ++L +P   F+  +  
Sbjct: 444 IEQSQKELQNFFDLSTNFLCIANKEGYFEKINFTFSKVLGYSERELLSEPIVHFIHPDDA 503

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQ 566
                 L ++        L  +        ++++L       P S  +  T  DI+  + 
Sbjct: 504 ESTLQELNKLARGKPA--LSFVNRYRCYSGEVVTLLWSAACDPVSGKFYATAVDITAQRN 561

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
            + +L+ AK  AE  +  KSDFLA +SHEIRTP+  ++G   ++   +     +   +  
Sbjct: 562 AQLELTQAKDAAEAAARAKSDFLATMSHEIRTPMNGVLGMLNLVLQSKL----DSEQLRK 617

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
                 S   +L ++ND+LD SK+++GK+ L      L   + E    + L A EK + +
Sbjct: 618 VKIAKSSAESLLSLINDILDFSKVDAGKLELELLDFDLRHHLDEFAGTMALRAQEKDLEL 677

Query: 687 RTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILRVR 742
               +      +  D   ++QI  N++SNAI FT  G +I+I        +   + + V 
Sbjct: 678 VLDQSAVEQSMVRGDPGRLRQILTNLVSNAIKFTAEG-EIVIRCQLQPEGDHLLLTVSVS 736

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG+G+   ++     PF Q+  S   +  GTGLGL + K + +   G   + S   +G+
Sbjct: 737 DTGIGIPADKIGGLFDPFTQVDASTTRQFGGTGLGLAICKRLSELMEGGITVHSEQGEGS 796

Query: 803 LIE--IIFPLYDTSHP 816
             E  +     + + P
Sbjct: 797 CFEFCVRLQRSELTQP 812



 Score = 40.0 bits (92), Expect = 1.9,   Method: Composition-based stats.
 Identities = 14/115 (12%), Positives = 30/115 (26%), Gaps = 6/115 (5%)

Query: 93  GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK-RQNTWYGKTTLWP 151
           G   EI+  L    G    + + +   D++   +    +     L  R      +     
Sbjct: 337 GDFLEINNALLGPTGYTRKEFLMLSYWDITPKDYEKEESQQLKQLSIRGRYGPYEKEYIR 396

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
             G     P+ L  + I            + I+          A  +   ++   
Sbjct: 397 KNGE--RYPVLLNGVLISDTQGR---EYIWSIIEDITERKQAEAASRAARQQIEQ 446


>gi|213968375|ref|ZP_03396519.1| two-component sensor/regulator [Pseudomonas syringae pv. tomato T1]
 gi|301384641|ref|ZP_07233059.1| two-component sensor/regulator [Pseudomonas syringae pv. tomato
           Max13]
 gi|302058906|ref|ZP_07250447.1| two-component sensor/regulator [Pseudomonas syringae pv. tomato
           K40]
 gi|302133019|ref|ZP_07259009.1| two-component sensor/regulator [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|213927013|gb|EEB60564.1| two-component sensor/regulator [Pseudomonas syringae pv. tomato T1]
          Length = 576

 Score =  350 bits (898), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 122/571 (21%), Positives = 216/571 (37%), Gaps = 55/571 (9%)

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF---------VYSHGNLFYANPSF 348
              ++ +           +     T           F            HG +   N   
Sbjct: 4   PPVDHPTTETQSRAEKIVESRRQKTLLKTGALQDAIFNSAYFSSIATDEHGVIQIFNVGA 63

Query: 349 LLLTKYKSVDDIEIAGGLS-----TLLDAPKLSDNNAIKPVM-----LYRSDRTCIAASA 398
             +  Y S D ++            L+       +    P+      L       I    
Sbjct: 64  ERMLGYHSEDVVDKITPADISDPAELIIRAAALSHELNTPITPGFEALVFKASRGIEDIY 123

Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK-------RKMEIEV 451
            L  I+ +     AM        +     +    I  ++   +  +       +++  + 
Sbjct: 124 ELTYIRKDGSRLSAM-VSVTSLRDSAETIIGYLLIGTDNTARKQEEETQALLDQRLRDQQ 182

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
               S++E+  D + + + +GII   N+ +  L G   ++++  P   F     P+  + 
Sbjct: 183 FYTRSLIESNIDALMMTDPQGIISDVNKQMMALTGRTRDELIGAPCKNFF--TDPASADA 240

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKN 569
            +  +LS       E         E ++S                     D++E K+ + 
Sbjct: 241 AIKRVLSEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRKLKGVFAAARDVTERKRFER 300

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
            L       E  S  KS+FLA +SHE+RTPL A+IGFSE +K+   G + +     Y   
Sbjct: 301 TLEEKNIELEHASHMKSEFLATMSHELRTPLNAVIGFSEALKDGMVGDMTDA-QRRYIGD 359

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I  SG  +L ++ND+LD+SK+E+G M L  E V LDE +S ++ +V+  A  +RI ++  
Sbjct: 360 IFNSGQHLLSLINDILDLSKVEAGMMLLELEAVDLDELLSNSLLIVREQAALQRIQLKLE 419

Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV------------ 737
              +   +  D R  KQI  N+L+NA+ F+  GG + ++    S  +V            
Sbjct: 420 TEADFGVLELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRQVSRAQVGILDGDWPVHSF 479

Query: 738 -----------ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
                       + V DTG+G+   ++ K  K F QI +S   + EGTGLGL + K + +
Sbjct: 480 PLPPGDYEHFLQVSVSDTGIGIAQSDMNKLFKAFSQIDSSLARKFEGTGLGLAMVKQLTE 539

Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
            + G   + S    G    +  P+   +   
Sbjct: 540 LHGGCVAVASVKDLGARFVVWLPIRTPATEE 570



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/230 (11%), Positives = 63/230 (27%), Gaps = 7/230 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            D  G + ++++++    G    ++IG    +         +  I  +L        + T
Sbjct: 199 TDPQGIISDVNKQMMALTGRTRDELIGAPCKNFFTDP-ASADAAIKRVLSEHKVSDYELT 257

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           +   +GT     +   A   + R+R+  G   F                +  + +  H  
Sbjct: 258 VRAYDGTETV--VSYNAATFHDRDRKLKGV--FAAARDVTERKRFERTLEEKNIELEHAS 313

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK-VSSLTEYYAHKDDVLKTEKYPLLTSEES 267
            +K    +    +              +K+  V  +T+        +      LL+    
Sbjct: 314 HMKSEFLATMSHELRTPLNAVIGFSEALKDGMVGDMTDAQRRYIGDIFNSGQHLLSLIND 373

Query: 268 SLP-EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
            L   + +   + L             +      +    R    L    D
Sbjct: 374 ILDLSKVEAGMMLLELEAVDLDELLSNSLLIVREQAALQRIQLKLETEAD 423



 Score = 45.0 bits (105), Expect = 0.050,   Method: Composition-based stats.
 Identities = 24/265 (9%), Positives = 65/265 (24%), Gaps = 26/265 (9%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGM-RLCDVSDILHI------------DPNNHIGD 135
            D HG ++  +    + +G ++  ++      D+SD   +             P     +
Sbjct: 50  TDEHGVIQIFNVGAERMLGYHSEDVVDKITPADISDPAELIIRAAALSHELNTPITPGFE 109

Query: 136 LL----KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN 191
            L     R      + T    +G+   +   ++   +        G+   G  +  R   
Sbjct: 110 ALVFKASRGIEDIYELTYIRKDGS--RLSAMVSVTSLRDSAETIIGYLLIGTDNTARKQE 167

Query: 192 DP-----RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSSLT 244
           +          +        L E       +   +  I            R ++++    
Sbjct: 168 EETQALLDQRLRDQQFYTRSLIESNIDALMMTDPQGIISDVNKQMMALTGRTRDELIGAP 227

Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
                 D          + SE      +      +  +        T  +  ++     +
Sbjct: 228 CKNFFTDPASADAAIKRVLSEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRKLKGVFA 287

Query: 305 HRNHPSLSAYFDEGENLTPETVDKC 329
                +    F+         ++  
Sbjct: 288 AARDVTERKRFERTLEEKNIELEHA 312


>gi|118590595|ref|ZP_01547997.1| ATP-binding region, ATPase-like protein [Stappia aggregata IAM
           12614]
 gi|118437058|gb|EAV43697.1| ATP-binding region, ATPase-like protein [Stappia aggregata IAM
           12614]
          Length = 814

 Score =  350 bits (898), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 116/656 (17%), Positives = 235/656 (35%), Gaps = 40/656 (6%)

Query: 173 REFSGFRGFGIVHVNRVDNDPRALGKRL-------DKKFSHLHEIKKGHSSVEKEKYDIF 225
              +G      +     +   +A                  L +     +     + ++ 
Sbjct: 168 GRTTGGAVVLRLRDLTGERQMQAELAARNAKISGELHMLHALLDAMPAPAWQRDAEGNLI 227

Query: 226 SQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTK 285
                              +  A   D        +  +E+     +         +   
Sbjct: 228 WANQAYAEAVDMTDADLAVKEGASFLDAAARTAMAVQRTEDGCFNARIPIVASGERRV-- 285

Query: 286 KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYA 344
                 +  N   +   +               E     T+D+      +YS    L + 
Sbjct: 286 -FEVTDVNANVGGAGIAVDISELEQAQKELGRAEEFHGRTLDQLAAAVAIYSADRKLQFY 344

Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTL--LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT 402
           N +F  L               + L  L A +     A   V   +   +  +  AR   
Sbjct: 345 NAAFRQLWDLDPAFLESRPEDSAVLDALRAARKIPEQADYRVWRNKMMESYQSLEARESW 404

Query: 403 IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI----L 458
                  +L +   P              G      +    +  +E     L  +    L
Sbjct: 405 WHLPDGRTLRVIANPHP-----------QGGVTYIYENVTEQLDLESRYNALTRVQGETL 453

Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP-----FTVFLEQNTPSVMNHYL 513
           +  S+ +A+   +G +   N A  +++G   + +   P      +      T       L
Sbjct: 454 DNLSEAVAVFGSDGRLRLWNPAFGRIWGLEEDQLTELPHVKEVVSACTLSETERDAWEQL 513

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH 573
              ++  L    +K++        ++    +           +T  D+++    +  L  
Sbjct: 514 AGNVTGLLDNRTQKVSRLERHNGDVVDYATVPLP---DGGTLVTFVDVTDSVNVERALLE 570

Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
             +  E+    K+ F+  VS+E+R+PLT IIGF++++ + +FG L + +  EYA+YI  S
Sbjct: 571 KNEALEQADQIKNAFIQHVSYELRSPLTNIIGFAQLLADPKFGELSD-KQSEYADYIQSS 629

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693
            + +L I+ND+LD++ +++G M L    V +   V+ A+  ++    E RI +RT    +
Sbjct: 630 SSALLAIINDILDLATLDAGIMELDLGEVDVAPTVAAAVEGLKDRIAEARINLRTHVPGD 689

Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753
           I  ++AD + ++Q+  N++SNA+ ++   G + +S +   + +V   V+D G G+    L
Sbjct: 690 IGMMVADEKRLRQVLFNLISNAVRYSEPDGVVDVSCSREDD-KVTFVVQDHGYGIPAEIL 748

Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            +    F  + +    R +G GLGL + K+ V+ + G   I S   KGT +  +FP
Sbjct: 749 TQVFNRF--VGHDTGSRRQGAGLGLAIVKSFVELHGGTVDIQSAEGKGTTVTCVFP 802



 Score = 70.8 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 40/397 (10%), Positives = 104/397 (26%), Gaps = 45/397 (11%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMI---GMRLCDVSDILHIDPNNHIGDLLKRQNTW 143
           W  DA G L   ++   + +      +    G    D +             + + ++  
Sbjct: 218 WQRDAEGNLIWANQAYAEAVDMTDADLAVKEGASFLDAAA-------RTAMAVQRTEDGC 270

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
           +         G      +          N    G    GI          +    R ++ 
Sbjct: 271 FNARIPIVASGERRVFEVT-------DVNANVGGA---GIAVDISELEQAQKELGRAEEF 320

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
                +      ++      +    +     ++ +   +  E       VL   +     
Sbjct: 321 HGRTLDQLAAAVAIYSADRKLQFYNAAF--RQLWDLDPAFLESRPEDSAVLDALRAARKI 378

Query: 264 SEESSLP-----EQEDFHTINLNQYTKKQYFGTLQNN-------SKESFEYLSHRNHPSL 311
            E++          E + ++   +       G               ++ Y +      L
Sbjct: 379 PEQADYRVWRNKMMESYQSLEARESWWHLPDGRTLRVIANPHPQGGVTYIYENVTEQLDL 438

Query: 312 SAYFDEGENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
            + ++    +  ET+D       V+ S G L   NP+F  +   +  D +     +  ++
Sbjct: 439 ESRYNALTRVQGETLDNLSEAVAVFGSDGRLRLWNPAFGRIWGLE-EDQLTELPHVKEVV 497

Query: 371 DAPKLSDNNAIKPVMLY-RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
            A  LS+        L           + ++  ++ +  + +    +P            
Sbjct: 498 SACTLSETERDAWEQLAGNVTGLLDNRTQKVSRLERHNGDVVDYATVPLPDG-------G 550

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
                 +  D+   +R +  +   L    +   +   
Sbjct: 551 TLVTFVDVTDSVNVERALLEKNEALEQA-DQIKNAFI 586



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 32/289 (11%), Positives = 84/289 (29%), Gaps = 29/289 (10%)

Query: 314 YFDEGENLTPETVDKCPIPFFVYSHGNLFYA--NPSFLLLTKYKSVDDIEIAGGLSTLLD 371
             ++ ++     VD+            +     N +   +        +    G      
Sbjct: 68  ALEKEKSDLKFRVDRL-EAMLNTDEQRVIVWTGNGAMPQIWGI-----LPEKSG-----V 116

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
               +   A    +  +           L         +L      + +A          
Sbjct: 117 PRPPAQLLAFGSWLTAKCAGDLERHLDMLFRTGEAFTTTLKTRTGTYVEALGRTTGGAVV 176

Query: 432 GIEPEDVDTRINKRKMEIEVMQ-------LCSILEATSDGIAIINREGIILSTNRAVSKL 484
               +    R  + ++     +       L ++L+A        + EG ++  N+A ++ 
Sbjct: 177 LRLRDLTGERQMQAELAARNAKISGELHMLHALLDAMPAPAWQRDAEGNLIWANQAYAEA 236

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
                 D+  K    FL+    + M      +   +      +I + ++ E ++  +  +
Sbjct: 237 VDMTDADLAVKEGASFLDAAARTAM-----AVQRTEDGCFNARIPIVASGERRVFEVTDV 291

Query: 545 IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
              +  +        DISE +Q + +L  A++   +     +  +A  S
Sbjct: 292 NANVGGAG----IAVDISELEQAQKELGRAEEFHGRTLDQLAAAVAIYS 336


>gi|298241884|ref|ZP_06965691.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297554938|gb|EFH88802.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 854

 Score =  350 bits (898), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 110/732 (15%), Positives = 243/732 (33%), Gaps = 46/732 (6%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD-ILHIDPNNHIGDLLKR---QNTWYGK 146
             G + +I++           +++G  + D+           H+   + R     T   +
Sbjct: 151 PDGLVLDINQRPLADAHLRREEVVGTPVTDLPAWSSDPVVQEHLSAAIARASRGETVLFE 210

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
             + P    +L + I +        +++       G               + L      
Sbjct: 211 AKIHPR--PDLSLDILMTITSHRDASQQVEYLICAG--RDITERKHAEEELRVLIDAIPQ 266

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
           L  + +      ++  +                   L   +      +       + +  
Sbjct: 267 LVWMAR--PDGSRDYCNRRWCDYTDMTSEQYQGDGWLQAIHPDDQQRVLEVWQHSVQTGR 324

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE-- 324
               E                     +++   + ++             ++    + E  
Sbjct: 325 PYETELRLRQGTTGAYRWFLVRAMQHKDDQGTTLKWFGTCTDIDDQKQAEQRLKASEENW 384

Query: 325 --TVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
               +  P   +     G + Y N  F     + + + ++  G    L       ++   
Sbjct: 385 RVLAETVPQLVWTTRPDGRVDYCNQRFCE-YMHAAFEQLQGYGWRQFL-----HPEDVER 438

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
              + + +  T     +                       N+  + +   G   +  D +
Sbjct: 439 VVALRHHTLETGEPFESEHRFRNGRTGAYHWFLARGMPVRNEAGQIVKWFGTCTDIDDQK 498

Query: 442 INKRKMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRK--PFT 498
             +  +     ++ +++++   GI  +   E +++  N A   + GY  ED+  +     
Sbjct: 499 RIEEALRQSQKRIRALIDSNIIGIVSVEGEEDVLVEANNAYLHMTGYTQEDVRSRTLNVE 558

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-YSLT 557
                    + +H L E+ +       E   +   K+   L + +               
Sbjct: 559 RTTPSEQAHLFHHALQELAARGQHTPFETELVC--KDGSRLPVLVGGVIFQECPRQIIGF 616

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
           + D S  K+ + +              K DF++  SHE+R+PLTA+   +  + +++   
Sbjct: 617 VLDNSARKELEQR--------------KDDFISMASHELRSPLTAMKLQT-TLLHRQLAK 661

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
            G P      + ++   N V  +V +LLD+SKI++G++    E V LD  + E    +Q 
Sbjct: 662 QGIPASAPALSSMETQINKVSRLVEELLDVSKIQAGRLEYRQETVDLDALLWEIADTMQQ 721

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737
                RIL+  +   ++   +AD   + Q+  N+LSNA+ ++P    + +  + TS E V
Sbjct: 722 THPSYRILVHGAVRASL---MADRDRLGQVFTNLLSNAVKYSPDAQTVEMDLS-TSQETV 777

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
            +RV D G+G+   + EK    F +     Q    G G+GL +   +V  + G   + ST
Sbjct: 778 TIRVHDHGLGIPREQREKIFDRFYRATGPSQKAIPGLGMGLYIVAEIVKHHGGTIMVEST 837

Query: 798 PAKGTLIEIIFP 809
             KG+   +  P
Sbjct: 838 VGKGSTFTVTIP 849



 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 52/510 (10%), Positives = 135/510 (26%), Gaps = 40/510 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMR-LCDVSDILHIDPNNHIGDLLKRQNTWY 144
            + +D    +   +       G    ++ G    C    ++       +    + +    
Sbjct: 29  VFVVDDTETIVYANASAQTLTGTTREEVCGTSLWCSAPHLVSPSLYQAVHKAKQTREP-- 86

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
                +    TN ++ + L++                G+    +   +P  L   L +  
Sbjct: 87  -TEVAYVSPATNRWLHVSLSST---DE----------GLALFFQEQLEPLPLQHALSQDE 132

Query: 205 SHLHEIKKGHSS----VEKEKYDIFSQQSPPPHLRM-KNKVSSLTEYYAHKDDVLKTEKY 259
               ++ +G S     V  +   +   Q P     + + +V                 + 
Sbjct: 133 HMYRDLLEGFSDGVMIVTPDGLVLDINQRPLADAHLRREEVVGTPVTDLPAWSSDPVVQE 192

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTK-----KQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
            L  +   +   +       ++              + ++ S++    +      +   +
Sbjct: 193 HLSAAIARASRGETVLFEAKIHPRPDLSLDILMTITSHRDASQQVEYLICAGRDITERKH 252

Query: 315 FDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
            +E   +    +D  P   ++    G+  Y N  +   T   S +  +  G L  +    
Sbjct: 253 AEEELRV---LIDAIPQLVWMARPDGSRDYCNRRWCDYTDMTS-EQYQGDGWLQAIHPDD 308

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
           +       +      S +T       L   Q              +  +     +   G 
Sbjct: 309 QQRVLEVWQ-----HSVQTGRPYETELRLRQGTTGAYRWFLVRAMQHKDDQGTTLKWFGT 363

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
             +  D +  +++++        + E     +     +G +   N+   +      E + 
Sbjct: 364 CTDIDDQKQAEQRLKASEENWRVLAETVPQLVWTTRPDGRVDYCNQRFCEYMHAAFEQLQ 423

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL-GSTKEEKLLSLRIIIKKLPFSS 552
              +  FL       +       L        E     G T        R +  +     
Sbjct: 424 GYGWRQFLHPEDVERVVALRHHTLETGEPFESEHRFRNGRTGAYHWFLARGMPVRNEAGQ 483

Query: 553 C--YSLTMHDISEWKQEKNKLSHAKKIAEK 580
              +  T  DI + K+ +  L  ++K    
Sbjct: 484 IVKWFGTCTDIDDQKRIEEALRQSQKRIRA 513



 Score =  103 bits (258), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/413 (8%), Positives = 91/413 (22%), Gaps = 28/413 (6%)

Query: 65  TNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI 124
           T    +E            +  W     G     +          + +  G         
Sbjct: 248 TERKHAEEELRVLIDAIP-QLVWMARPDGSRDYCNRRWCDYTDMTSEQYQGDGWLQAIHP 306

Query: 125 LHIDPNNHIG-DLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI 183
                   +    ++    +  +        T  Y    + A+         +  + FG 
Sbjct: 307 DDQQRVLEVWQHSVQTGRPYETE-LRLRQGTTGAYRWFLVRAMQHKDDQG--TTLKWFGT 363

Query: 184 VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP-----PHLRMKN 238
                         K  ++ +  L E         +    +                   
Sbjct: 364 CTDIDDQKQAEQRLKASEENWRVLAETVPQLVWTTRPDGRVDYCNQRFCEYMHAAFEQLQ 423

Query: 239 KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE 298
                   +    + +   ++  L + E    E    +      +        ++N + +
Sbjct: 424 GYGWRQFLHPEDVERVVALRHHTLETGEPFESEHRFRNGRTGAYHWFLARGMPVRNEAGQ 483

Query: 299 SFEYLSHRNHP----SLSAYFDEGENLTPETVDKCPIPF--FVYSHGNLFYANPSFLLLT 352
             ++            +     + +      +D   I           L  AN ++L +T
Sbjct: 484 IVKWFGTCTDIDDQKRIEEALRQSQKRIRALIDSNIIGIVSVEGEEDVLVEANNAYLHMT 543

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
            Y   D    +  L+     P    +     +    +          L  +  +      
Sbjct: 544 GYTQEDV--RSRTLNVERTTPSEQAHLFHHALQELAARGQHTPFETEL--VCKDGSRLPV 599

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK----MEIEVMQLCSILEAT 461
           +                  G   ++   +  +++    + +   +L S L A 
Sbjct: 600 LVGGVI----FQECPRQIIGFVLDNSARKELEQRKDDFISMASHELRSPLTAM 648



 Score = 78.1 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 41/274 (14%), Positives = 87/274 (31%), Gaps = 22/274 (8%)

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIA 363
             N                  ++  P   FV      + YAN S   LT     +    +
Sbjct: 1   MSNAKQTKRVTPGSRETLLHMLEILPDAVFVVDDTETIVYANASAQTLTGTTREEVCGTS 60

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
              S     P L   +  + V   +  R           +       L ++    ++   
Sbjct: 61  LWCSA----PHLVSPSLYQAVHKAKQTREPTEV----AYVSPATNRWLHVSLSSTDEGLA 112

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
                       E ++    +  +  +      +LE  SDG+ I+  +G++L  N+    
Sbjct: 113 L--------FFQEQLEPLPLQHALSQDEHMYRDLLEGFSDGVMIVTPDGLVLDINQRPLA 164

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR-QTLEKITLGSTKEEKLLSLR 542
                 E+++  P T     ++  V+  +L+  ++   R +T+        + +  L + 
Sbjct: 165 DAHLRREEVVGTPVTDLPAWSSDPVVQEHLSAAIARASRGETVLFEAKIHPRPDLSLDIL 224

Query: 543 IIIKKLPFSSCYSLTM----HDISEWKQEKNKLS 572
           + I     +S     +     DI+E K  + +L 
Sbjct: 225 MTITSHRDASQQVEYLICAGRDITERKHAEEELR 258



 Score = 77.8 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 25/282 (8%), Positives = 74/282 (26%), Gaps = 15/282 (5%)

Query: 55  TDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI 114
           TD + +  +      SE  +         +  W     G +   ++   + +     ++ 
Sbjct: 365 TDIDDQKQAEQRLKASEENWRVLAETVP-QLVWTTRPDGRVDYCNQRFCEYMHAAFEQLQ 423

Query: 115 GMRLCDVSDILHIDPNNHIG-DLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNR 173
           G           ++    +    L+    +  +        T  Y       +P+ +   
Sbjct: 424 GYGWRQFLHPEDVERVVALRHHTLETGEPFESEHRF-RNGRTGAYHWFLARGMPVRNEAG 482

Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK-KGHSSVEKEKYDIFSQQSP-- 230
           +    + FG               ++  K+   L +    G  SVE E+  +    +   
Sbjct: 483 QIV--KWFGTCTDIDDQKRIEEALRQSQKRIRALIDSNIIGIVSVEGEEDVLVEANNAYL 540

Query: 231 ----PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKK 286
                    ++++  ++      +   L       L +     P + +    + ++    
Sbjct: 541 HMTGYTQEDVRSRTLNVERTTPSEQAHLFHHALQELAARGQHTPFETELVCKDGSRLPVL 600

Query: 287 QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
                 Q       + +      S     ++ ++        
Sbjct: 601 VGGVIFQE---CPRQIIGFVLDNSARKELEQRKDDFISMASH 639


>gi|307719098|ref|YP_003874630.1| two-component system, sensor histidine kinase [Spirochaeta
           thermophila DSM 6192]
 gi|306532823|gb|ADN02357.1| two-component system, sensor histidine kinase [Spirochaeta
           thermophila DSM 6192]
          Length = 776

 Score =  350 bits (898), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 95/361 (26%), Positives = 174/361 (48%), Gaps = 11/361 (3%)

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
           L  +LE    G+ +++ EG IL+ N     +  +  E++    F   +  +   V++ ++
Sbjct: 2   LLEVLEHVPVGMILLSPEGDILAANGRFFDMVDWTEEELDGVRFPQIIYSSDEPVVSSFI 61

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH 573
             +   ++ Q    +   + K+  +   R+                DI++ K  +  L  
Sbjct: 62  ERLARGEVDQA-SILVRAARKDGSIAWWRL-WGFSRGGEVLLGAF-DITDQKVTEEHLRK 118

Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
            ++ A +    KS FLA +SHEIRTPL  I+G +E++++ R     +    +Y   I  S
Sbjct: 119 EREEAIRSVQSKSRFLANMSHEIRTPLHTILGMTELLEDTRL----DEEQRDYVQQIRFS 174

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693
           G  +L ++ND+LD SKIE+GK+ +      L E V +A+ +V L A++K + +       
Sbjct: 175 GEALLALINDILDYSKIEAGKLPMEIIEFDLYEVVEQAVGMVSLQAHKKHLEVVVDIGEE 234

Query: 694 IPR-ILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDTGVGMT 749
           +PR +  D   ++QI +N+ +NA+ FT  G    ++ +         V   V DTG+G+ 
Sbjct: 235 VPRKVKGDPLRIRQILVNLANNAVKFTEKGHVFCRVQLVQERKGVAWVAFTVEDTGIGIP 294

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             +  +  + F QI  S   R  GTGLGL ++K++V+   G+  + S   +G+    + P
Sbjct: 295 ENKKHRLFRVFSQIDESTTRRFGGTGLGLAISKSLVEMMKGEIGVRSKEGEGSSFWFLLP 354

Query: 810 L 810
           L
Sbjct: 355 L 355



 Score = 43.1 bits (100), Expect = 0.21,   Method: Composition-based stats.
 Identities = 13/134 (9%), Positives = 44/134 (32%), Gaps = 13/134 (9%)

Query: 321 LTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
           +  E ++  P+   + S  G++  AN  F  +  +   ++++       +  + +   ++
Sbjct: 1   MLLEVLEHVPVGMILLSPEGDILAANGRFFDMVDWT-EEELDGVRFPQIIYSSDEPVVSS 59

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
            I+      +      AS  +   + +   +    +        F           +  D
Sbjct: 60  FIE----RLARGEVDQASILVRAARKDGSIAWWRLW-------GFSRGGEVLLGAFDITD 108

Query: 440 TRINKRKMEIEVMQ 453
            ++ +  +  E  +
Sbjct: 109 QKVTEEHLRKEREE 122


>gi|260769480|ref|ZP_05878413.1| signal transduction histidine kinase-like protein [Vibrio furnissii
           CIP 102972]
 gi|260614818|gb|EEX40004.1| signal transduction histidine kinase-like protein [Vibrio furnissii
           CIP 102972]
          Length = 1268

 Score =  350 bits (898), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 132/672 (19%), Positives = 235/672 (34%), Gaps = 45/672 (6%)

Query: 168 IYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ 227
                 EF G RGFG++        P      + K  +   +      ++      +F  
Sbjct: 97  TRDYPLEFPGARGFGLIRFI----LPDQKNAFVTKAAAERPDQHYDIRTLTPHNDSLFLI 152

Query: 228 QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287
           Q   P  R +  V       + + D              + +   +              
Sbjct: 153 QYIEPENRNREAVGLDIGSESMRRDAALNAARYNEVRLTAPITLVQASKKTKQGFLILMP 212

Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPS 347
            +      ++                  DE  +      D   +     ++G      P 
Sbjct: 213 IYQHNDVPARIDQRLQELTGWSYAPILIDEVLSSVSGLKDDVSLSIADVTNGAPQ---PF 269

Query: 348 FLLLTKYKSVD-------DIEIAGGLSTLLDAPKLSD--NNAIKPVMLYRSDRTCIAASA 398
           F   T              +        L       D         +      + +    
Sbjct: 270 FSRGTNEADTPYQTQQIIWLFGRDWALNLTAKQSFVDSLPLPPNEYIYREILGSTLVIML 329

Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458
            + ++Q              E A    + + +   + E       +   +I  MQ  +IL
Sbjct: 330 IVFSLQLVTTRRAQAAKHEAELALATEQALKEANAKLEQQVAERTEAMAQINAMQ-RTIL 388

Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEI 516
            +    I   + +GII   N +  KL GY   +++    P    L +   +       E+
Sbjct: 389 SSAGYAIIASDLDGIITVFNPSAEKLLGYTAAEMVGVCTPSRFHLMEEVATRAKQLSQEL 448

Query: 517 LSLDLRQTLEKITLGS------------TKEEKLLSLRIIIKKLPFSS----CYSLTMHD 560
                      +                 K    + +R+I+  L         Y    +D
Sbjct: 449 GETIHPGFDVFVAKARLGFVDITRWTYVHKNGHHIPIRLIVSCLLDDHQEPVGYLGIAYD 508

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           ++E  Q + +L+ AK++AE+ +  KSDFLA +SHE+RTP+ AI+G  ++ +N       N
Sbjct: 509 LTETLQREKELAEAKELAEQANRAKSDFLANMSHELRTPMNAILGLLQIAQNTDL----N 564

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
            +  +Y N    +   +L ++ND+LD SK+E+GKM +  +P SL E + E   L+     
Sbjct: 565 KQQRDYLNKTQNAAQSLLVLLNDILDFSKVEAGKMEIEQQPFSLPELMHETGILLSSNLQ 624

Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE--- 736
            K + I      ++P  ++ D   ++QI LN+  NAI FT +G ++ +S    S+     
Sbjct: 625 HKHLEIIYQIDEDVPTYLIGDSLRLRQILLNLAGNAIKFTEAG-EVKVSIQTESHNGDRC 683

Query: 737 -VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            + + V DTG+GMT  +     + F Q  +S   R  GTGLGL + K +V    G   + 
Sbjct: 684 VLRITVSDTGIGMTEEQQRIVFQGFSQAESSISRRYGGTGLGLSIVKHLVGLMEGSVQVK 743

Query: 796 STPAKGTLIEII 807
           S    G+     
Sbjct: 744 SEQGVGSEFSFT 755



 Score = 43.1 bits (100), Expect = 0.19,   Method: Composition-based stats.
 Identities = 24/214 (11%), Positives = 56/214 (26%), Gaps = 26/214 (12%)

Query: 36  TEKSKKENPCH---DSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAH 92
            + +K E       +   +       Q+    T  +   N      +          D  
Sbjct: 342 AQAAKHEAELALATEQALKEANAKLEQQVAERTEAMAQINAMQRTILSSAGYAIIASDLD 401

Query: 93  GYLKEISEELPKTIGNYAFKMIG-------MRLCDVSDI---------LHIDPNNHIGDL 136
           G +   +    K +G  A +M+G         + +V+             I P   +   
Sbjct: 402 GIITVFNPSAEKLLGYTAAEMVGVCTPSRFHLMEEVATRAKQLSQELGETIHPGFDVFVA 461

Query: 137 LKRQNTWYGKTT--LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR 194
            K +  +   T        G ++ + + ++ L     ++E  G+ G  I +         
Sbjct: 462 -KARLGFVDITRWTYVHKNGHHIPIRLIVSCL--LDDHQEPVGYLG--IAYDLTETLQRE 516

Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228
                  +     +  K    +    +       
Sbjct: 517 KELAEAKELAEQANRAKSDFLANMSHELRTPMNA 550


>gi|219850003|ref|YP_002464436.1| multi-sensor hybrid histidine kinase [Chloroflexus aggregans DSM
            9485]
 gi|219544262|gb|ACL26000.1| multi-sensor hybrid histidine kinase [Chloroflexus aggregans DSM
            9485]
          Length = 1352

 Score =  350 bits (898), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 130/648 (20%), Positives = 231/648 (35%), Gaps = 44/648 (6%)

Query: 196  LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255
                     +   +      S  +E   I          ++  +           +D + 
Sbjct: 439  RPLAFHSLATTQVDTLPDPVSYVREAIIIHELSRYGRVWQVAFRPGPTYPQRWLNEDAIW 498

Query: 256  TEKYPLLTSEESSLPEQEDFHTINLNQYTKK--QYFGTLQNNSKESFEYLSHRNHPSLSA 313
                 + +     L            +   +       +        E L         A
Sbjct: 499  RSVLAVGSVAIFFLFVGVRQRHEVRQRRLTRTYALLSAINKMIIREREPLRIFQAVCQIA 558

Query: 314  YFDEGENLTPETVDKC------PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
                G  +    +         PI     +   L   +          +   +     + 
Sbjct: 559  VKQGGFRMAWVGLRNTTNNRLEPIAVAGKADDYLAQLDIVLTEDNPCPTAQALLRKQAI- 617

Query: 368  TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF-IPFEKANQFPE 426
             + D          +   L    R   +       I  + E    ++            E
Sbjct: 618  IVNDVANDRRVAIWREAALRLGYRASASF-----PILIDGEVYATLSLYAAQPGFFDTAE 672

Query: 427  NMPQNGIEPEDV---DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
                N +  +       R  + ++     +   I+    D +  +NREG I+      + 
Sbjct: 673  VHLLNELVQDIAFAIVVRRQEAQLRASEQRNHLIVSTLPDIVFRLNREGRIIDVADGNTN 732

Query: 484  LFGYPVEDILRKPFTVF---LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
                P  +IL +        L     S +   LT   +    QT+    L  + +E+   
Sbjct: 733  SLLKPPAEILNQTLEDLSDVLSSEMISELRLALTTAFATGELQTVAYKLLF-SGQERFFE 791

Query: 541  LRIIIKKLPFSSCYSLTMHDISEWKQEK------------------NKLSHAKKIAEKES 582
             RI        +   + + DI+ W+  +                   +LS A     +  
Sbjct: 792  ARIKAIPTGDEA--IVLVRDITAWRVAELQLQAERDLLAQRVAERTAELSRANAELARSV 849

Query: 583  SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
              K +FLA +SHE+RTPL  I+  SE +  +  GPL N R       I+ SG  +L ++N
Sbjct: 850  RVKDEFLANMSHELRTPLNTILTLSESLLEELRGPL-NERQRASIQLIETSGRHLLTLIN 908

Query: 643  DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702
            D+LD++KIE+G+M L  E V++ +    ++ L++  A +K+I +         R LAD R
Sbjct: 909  DVLDVAKIEAGRMELVKEVVAVSDVCESSLVLIKEQAAKKQIRLHCVIDAPHTRFLADPR 968

Query: 703  SVKQIALNILSNAIHFTPSGGQIIISTTH-TSNEEVILRVRDTGVGMTNYELEKAMKPFG 761
             +KQI +N+LSNA+ FTP GG + +  T  T+   +   V DTG+G+   +L +  +PF 
Sbjct: 969  RLKQILVNLLSNAVKFTPEGGSVELRVTTDTAQGTIAFAVSDTGIGIAPDQLPRLFQPFV 1028

Query: 762  QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            Q+ +S     EG+GLGL L + +VD + G   + STP  G++  +  P
Sbjct: 1029 QLDSSLTREHEGSGLGLALVRRLVDLHGGSVSVTSTPGSGSVFTVTLP 1076



 Score = 41.2 bits (95), Expect = 0.67,   Method: Composition-based stats.
 Identities = 22/196 (11%), Positives = 54/196 (27%), Gaps = 12/196 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR---QNT 142
            + ++  G + ++++    ++     +++   L D+SD+L  +  + +   L        
Sbjct: 714 VFRLNREGRIIDVADGNTNSLLKPPAEILNQTLEDLSDVLSSEMISELRLALTTAFATGE 773

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRV-DNDPRALGKRLD 201
                      G   +    + A+P               +V            L    D
Sbjct: 774 LQTVAYKLLFSGQERFFEARIKAIPTGDEA--------IVLVRDITAWRVAELQLQAERD 825

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
                + E     S    E       +            + L       + +L+  + PL
Sbjct: 826 LLAQRVAERTAELSRANAELARSVRVKDEFLANMSHELRTPLNTILTLSESLLEELRGPL 885

Query: 262 LTSEESSLPEQEDFHT 277
              + +S+   E    
Sbjct: 886 NERQRASIQLIETSGR 901


>gi|21228731|ref|NP_634653.1| sensory transduction histidine kinase [Methanosarcina mazei Go1]
 gi|20907241|gb|AAM32325.1| hypothetical sensory transduction histidine kinase [Methanosarcina
           mazei Go1]
          Length = 716

 Score =  350 bits (898), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 99/397 (24%), Positives = 182/397 (45%), Gaps = 9/397 (2%)

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
                            I     +  + +++++ +  +   +L++ ++    ++ +  I+
Sbjct: 321 RRLPLEGNDELYRLSREINGMLSEIELAEQELKSQEREKKVLLDSLNELAIFVDPDFKII 380

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
             N+A  +     +E           + N     +  L +I +   +++ E         
Sbjct: 381 WANKAALEHMKIDLEKAKGMCVKTTPDINGSLFGHMQLEKIFNSGNKESGEFSLE----N 436

Query: 536 EKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
                ++ I              T  DI+E K  +  L   K++AE  +  KS+FLA +S
Sbjct: 437 GTYWFVQAIPVTDDSGKIIGILGTFRDITERKAIEK-LLQEKQVAEIANRTKSEFLANMS 495

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HE+RTPL +IIGFS+++ +Q +G L N + ++Y N I +SG  +L+++ND+LD+SK+E+G
Sbjct: 496 HELRTPLNSIIGFSDLLCDQIYGKL-NEKQLKYTNNISKSGKHLLNLINDILDLSKVEAG 554

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713
           KM L +    L + ++   SL+   A  K I I  +   ++  I AD     QI  N++ 
Sbjct: 555 KMELDYREFELADRLNSVKSLLSPIAARKNIKIEINVNKDLTTICADEARFVQIMYNLVD 614

Query: 714 NAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
           NAI F+     + I       E +   V D G+G+   +  K  +PF Q+      + +G
Sbjct: 615 NAIKFSFENNPVRIE-ARRKGEFLETTVTDIGIGIKPEDQHKLFQPFSQVAAFSSKKFQG 673

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           TGLGL L K +V+ + G  +  S P +G+      P+
Sbjct: 674 TGLGLSLVKQIVNLHGGYVWFRSIPGEGSTFAFAIPI 710


>gi|315185742|gb|EFU19509.1| multi-sensor hybrid histidine kinase [Spirochaeta thermophila DSM
           6578]
          Length = 785

 Score =  350 bits (898), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 94/361 (26%), Positives = 172/361 (47%), Gaps = 11/361 (3%)

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
           L  +LE    G+ +++ EG IL+ N     +  +  E++    F   +  +   V++ ++
Sbjct: 12  LLEVLEHVPVGMILLSPEGDILAANGRFLDMVDWSEEELDGVRFPQIIYSSDEPVVSSFI 71

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH 573
             +           +   + K+  +   R+       +        DI++ K  +  L  
Sbjct: 72  DRLAR-GEAHQAGLLVRAARKDGSIAWWRL-WGFSRGAEVLLGVF-DITDQKVTEEHLRK 128

Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
            ++ A +    KS FLA +SHEIRTPL  I+G +E++++ R     +    +Y   I  S
Sbjct: 129 EREEAIRSVQSKSRFLANMSHEIRTPLHTILGMTELLEDTRL----DEEQRDYVQQIRFS 184

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693
           G  +L ++ND+LD SKIE+GK+ +      L E V +A+ +V L A++K + +       
Sbjct: 185 GEALLALINDILDYSKIEAGKLPMEIIDFDLYEVVEQAVGMVSLQAHKKHLEVVVDIGEE 244

Query: 694 IPR-ILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDTGVGMT 749
           +PR +  D   ++QI +N+ +NA+ FT  G    ++ +         V   V DTG+G+ 
Sbjct: 245 VPRRVKGDPLRIRQILVNLANNAVKFTEKGHVFCRVQLVQQRKGVAWVAFTVEDTGIGIP 304

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             +  +  + F QI  S   R  GTGLGL ++K++V+   G+  + S   +G+    + P
Sbjct: 305 ENKKHRLFRVFSQIDESTTRRFGGTGLGLAISKSLVEMMKGEIGVRSREGEGSSFWFLLP 364

Query: 810 L 810
           L
Sbjct: 365 L 365



 Score = 41.9 bits (97), Expect = 0.49,   Method: Composition-based stats.
 Identities = 16/137 (11%), Positives = 40/137 (29%), Gaps = 13/137 (9%)

Query: 318 GENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
              +  E ++  P+   + S  G++  AN  FL +  + S ++++              S
Sbjct: 8   SSPMLLEVLEHVPVGMILLSPEGDILAANGRFLDMVDW-SEEELDGV-----RFPQIIYS 61

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
            +  +    + R  R     +  L        +              F           +
Sbjct: 62  SDEPVVSSFIDRLARGEAHQAGLLVRAARKDGSIAWWRLW------GFSRGAEVLLGVFD 115

Query: 437 DVDTRINKRKMEIEVMQ 453
             D ++ +  +  E  +
Sbjct: 116 ITDQKVTEEHLRKEREE 132


>gi|302036411|ref|YP_003796733.1| putative hybrid histidine kinase [Candidatus Nitrospira defluvii]
 gi|300604475|emb|CBK40807.1| putative Hybrid histidine kinase [Candidatus Nitrospira defluvii]
          Length = 1340

 Score =  350 bits (898), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 132/869 (15%), Positives = 266/869 (30%), Gaps = 113/869 (13%)

Query: 27  KKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVS--------NTNYLDSENTFVFDP 78
           +++ ++      S+ E    +     N    N    +             +S   F    
Sbjct: 93  RREAEDALRAANSRLELRVAEQ--TKNLVSANDRLTAQLVEQRRIEAELRESRERFELAA 150

Query: 79  IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIG--MRLCDVSDILHIDPNNHIGDL 136
               V   W  D   +    S      +G    ++ G                      L
Sbjct: 151 EGADVG-VWEWDLQEHTAYYSSRWKSQLGCAESEIGGTIADWETRLHPDDRARALATVTL 209

Query: 137 LKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRAL 196
            +   T   +           Y  I      ++         R  GI             
Sbjct: 210 FQEGYTKQYRLDHRLRHHDGSYRWISSLGAGVFDEQGRMI--RMTGIHLDVTARTQAEEA 267

Query: 197 GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSS---LTEYYAHKD 251
            +  + ++  L E                        +   +  ++     L        
Sbjct: 268 RRESEDRYRTLVEQAGDIIYRTDAAGRFIYCNPTSLRVLGYLPEELLGRHYLEIVLPQCR 327

Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN---NSKESFEYLSHRNH 308
              +         +      +    T +  +    Q+   L      S            
Sbjct: 328 SQAERFYGRQFVRKTPRTVYEVPVATKDGREVWLGQHTQLLLEGGVVSGFQVVARDITER 387

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
             +     E E    +     P    +     G +   N +F+ ++ +   + I    G+
Sbjct: 388 KGVEQALRESEERFSKAFHSSPAGMAISRLEDGRVLDVNEAFVRVSGFSREELI----GM 443

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
           S+L     ++  +      +   D           T   + E    +      +      
Sbjct: 444 SSLDVGIWVNPEDRRHLAEILTRDGFLRHLEKEFRT--KSGEVRHGLFN---VEPVCIGR 498

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCS------------------------------ 456
                 +  +       +  +      L +                              
Sbjct: 499 ETCVLTLVLDITRRTEAEAALRRSQSVLQAHQHALMRLTKSQHIGSGDWQSALEELMQTS 558

Query: 457 ----ILEATSDGIAIINREGIILST-----------------N-----RAVSKLFGYPVE 490
                ++  S  + +++R G IL                   N     R  ++L    V 
Sbjct: 559 ALVLAVDRAS--VWLLDRTGTILDCVELYEQGQARHSRGQRLNVAEYPRYFAELLQEQVV 616

Query: 491 DIL----RKPFTVFLEQNTPSVMNHYLTEI---LSLDLRQTLEKITLGSTKEEKLLSLRI 543
           D          +  ++    ++    L ++       L   +    +G  +E      R 
Sbjct: 617 DAYDVAADSRASELVQPYLGALGIASLLDVPIFFGGRLAGVVCHERVGLPRE----WTRE 672

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
            ++            ++  +  + +  L  AK+ AE  +  KSDFLA +SHEIRTP+ AI
Sbjct: 673 EVQFATSVGNLVALAYEAKQRLEAETALMSAKEAAEFANRAKSDFLATMSHEIRTPMNAI 732

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +G ++++         N    EY      +G+ +L ++ND+LD+SKIE+G ++L      
Sbjct: 733 VGMADLLSETPL----NEDQREYVQIFRDAGSNLLSLINDVLDLSKIEAGHLDLDLVDFD 788

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSG 722
           L++ V  A  LV + A+EK + +      ++P  ++ D   ++Q+ LN+L NAI FT  G
Sbjct: 789 LNDLVQRAAELVAVRASEKNLELAYQIQPDVPTSLVGDPNRLRQVLLNLLGNAIKFTDEG 848

Query: 723 GQIIISTTHTSN----EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
            ++++             ++  VRDTG+G+   +L    + F Q+ +S      GTGLGL
Sbjct: 849 -EVVLRVERDPQADGPGTILFTVRDTGIGIPTDKLAAIFERFTQVDSSTTRPYSGTGLGL 907

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEII 807
            +++ +V+   GK ++ S   +G+     
Sbjct: 908 TISRRLVERMGGKMWVDSELGRGSTFSFT 936



 Score =  127 bits (319), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 40/395 (10%), Positives = 105/395 (26%), Gaps = 18/395 (4%)

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
           LD      H I   +         +    +P  +  +   + +   + A     +    +
Sbjct: 15  LDAAVPLGHGIWLLYLLPLWLSSRLAPPAAPLRYASVCTVLLAGGLWLAPPGVDVTAVMF 74

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP---------S 310
                                 +   +     L+    E  + L   N            
Sbjct: 75  SRAIGTVMIWGAAYLLSQRREAEDALRAANSRLELRVAEQTKNLVSANDRLTAQLVEQRR 134

Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSVDDIEIAGGLSTL 369
           + A   E         +   +  + +       Y +  +         +         T 
Sbjct: 135 IEAELRESRERFELAAEGADVGVWEWDLQEHTAYYSSRWKSQLGCAESEIGGTIADWETR 194

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
           L     +   A   +     +          H ++ +  +   ++ +     ++    + 
Sbjct: 195 LHPDDRARALATVTLF---QEGYTKQYRLD-HRLRHHDGSYRWISSLGAGVFDEQGRMIR 250

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
             GI  +       +        +  +++E   D I   +  G  +  N    ++ GY  
Sbjct: 251 MTGIHLDVTARTQAEEARRESEDRYRTLVEQAGDIIYRTDAAGRFIYCNPTSLRVLGYLP 310

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
           E++L + +   +     S    +          +T+      +TK+ + + L    + L 
Sbjct: 311 EELLGRHYLEIVLPQCRSQAERFYGRQFVRKTPRTV-YEVPVATKDGREVWLGQHTQLLL 369

Query: 550 FSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKE 581
                  + +   DI+E K  +  L  +++   K 
Sbjct: 370 EGGVVSGFQVVARDITERKGVEQALRESEERFSKA 404



 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/227 (9%), Positives = 59/227 (25%), Gaps = 11/227 (4%)

Query: 375 LSDNNAIKPVMLYRSDRTC-IAASARLHTIQWNRENSLAMTFIPFEKANQFPE---NMPQ 430
                 +  VM  R+  T  I  +A L + +   E++L       E              
Sbjct: 63  APPGVDVTAVMFSRAIGTVMIWGAAYLLSQRREAEDALRAANSRLELRVAEQTKNLVSAN 122

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490
           + +  + V+ R  + ++     +     E    G+   + +      +       G    
Sbjct: 123 DRLTAQLVEQRRIEAELRESRERFELAAEGADVGVWEWDLQEHTAYYSSRWKSQLGCAES 182

Query: 491 DILRK--PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
           +I      +   L  +  +     +  +      +           +     +  +   +
Sbjct: 183 EIGGTIADWETRLHPDDRARALATV-TLFQEGYTKQYRLDHRLRHHDGSYRWISSLGAGV 241

Query: 549 PFSSCYSLTMH----DISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
                  + M     D++   Q +     ++           D + R
Sbjct: 242 FDEQGRMIRMTGIHLDVTARTQAEEARRESEDRYRTLVEQAGDIIYR 288


>gi|298675432|ref|YP_003727182.1| multi-sensor signal transduction histidine kinase [Methanohalobium
           evestigatum Z-7303]
 gi|298288420|gb|ADI74386.1| multi-sensor signal transduction histidine kinase [Methanohalobium
           evestigatum Z-7303]
          Length = 851

 Score =  350 bits (897), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 106/388 (27%), Positives = 180/388 (46%), Gaps = 16/388 (4%)

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG----IILSTNRAVSKLFGYP 488
           +  +  +     +K      +L  I+E++     + N++       +S N      FGY 
Sbjct: 469 VSEDLREYTKELKKSNQLRNELAKIIESSPVIAFLWNKDDSCSVNYVSNN---VDQFGYD 525

Query: 489 VEDILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
            +D L     +   +  +    +     E +  +  +         TK  ++  +     
Sbjct: 526 PDDFLSGSLNYADIIHPDDLENVKEKTVETI-TNCLEEFNHEYRILTKNGEVRWVDERTS 584

Query: 547 KLPFSSCYSLTMH----DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
                +     +     D+++ KQ ++ L  AK IAE  +  K++FLA VSHE+RTPL +
Sbjct: 585 SDFDENGNVTYLRGIVIDVTDKKQAEHALIEAKMIAESANRTKNEFLANVSHELRTPLNS 644

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           IIGFSE++  +R G L N     Y N +  SG  +L ++N +LDISKIE+GKM+ + + +
Sbjct: 645 IIGFSELMLTERRGEL-NEYQKHYLNNVKNSGYHLLSLINKILDISKIEAGKMDYNPQNL 703

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
            + + V++  + +   A  K I + T     +  I AD   +K+   N+++NAI FTP  
Sbjct: 704 PIIDLVNDVSNTMHPQALNKNIELETITDKYLGNIYADENKLKEALYNLVTNAIKFTPER 763

Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
           G++ +         +   V+DTG+G+   +     KPF QI  S      G GLGL L K
Sbjct: 764 GKVTLQVNKLD-GNIRFAVKDTGIGIPEDKQSDLFKPFTQIDTSASREYGGAGLGLALVK 822

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             V+ + G+ +I S   KGT I    P+
Sbjct: 823 KFVEMHNGRIWIESEVNKGTAIYFTIPV 850


>gi|326391194|ref|ZP_08212738.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325992763|gb|EGD51211.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 568

 Score =  350 bits (897), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 84/373 (22%), Positives = 162/373 (43%), Gaps = 41/373 (10%)

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
           +  +     ++ E  ++ +I++  +DG+   + +G I+  N A  K+    +E  L  P 
Sbjct: 234 LRLKQTLNDIQGEKNKIEAIIQFMTDGVVATDAKGNIIHYNEAAEKMLNVKLE--LGMPI 291

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSL 556
              L       +                           K+L++ I   K       Y  
Sbjct: 292 EGILNLEKEDAVATM--------------------NCGNKVLTVNIAPLKSNQQIEGYVY 331

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            +HDI+E  +                + + +F+A VSHE+RTPL  I  + E +    + 
Sbjct: 332 VLHDITEQHKL--------------DAMRKEFVANVSHELRTPLATIKSYVETLL---YS 374

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
            +       +   ID   + +  +V DLL +SK++S + NL FE  +L+E + + I+ + 
Sbjct: 375 DVDAEYLKRFLKIIDSETDRMTRLVKDLLLLSKMDSEEKNLKFEHKNLNEVIIDVINRLS 434

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
           + A++K   +          +  D   ++Q+ +N+++NAI +TP  G I + T +     
Sbjct: 435 IEAHKKNQKLIVDLQEVPRHVYIDKDKMEQVIVNLVTNAIKYTPENGMIKVMTEY-DENF 493

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
               V D G+G+   +L +  + F ++  ++     GTGLGL + K +V+ + G+  I S
Sbjct: 494 ATFIVEDNGIGIPKEDLPRIFERFYRVDKARSRELGGTGLGLSIVKQIVELHKGEVNIES 553

Query: 797 TPAKGTLIEIIFP 809
              KGT++ +  P
Sbjct: 554 EVGKGTIVRVKLP 566


>gi|329849802|ref|ZP_08264648.1| non-motile and phage-resistance protein [Asticcacaulis biprosthecum
           C19]
 gi|328841713|gb|EGF91283.1| non-motile and phage-resistance protein [Asticcacaulis biprosthecum
           C19]
          Length = 836

 Score =  350 bits (897), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 150/663 (22%), Positives = 250/663 (37%), Gaps = 47/663 (7%)

Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS 242
           +  ++     P+  G  L                +  +  D  S        R  ++   
Sbjct: 180 VARLDGELAPPQPNGLSLLVAGDGAILESSDERLIGLDIKDALSVSYAQLRARADSRDLI 239

Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302
                      L +          + +P Q+ + +            G L   +      
Sbjct: 240 QGARDGDGFVKLASAPQGDGRIAVAGVPTQQFYSSSAAWIKGLIFVGGPLLIGALFGVLL 299

Query: 303 LSHRNHPSLS-AYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDI 360
           +            F   E      V+      + +     L Y +    ++  +      
Sbjct: 300 VFQARKTHTDNLQFQANEQRYRLAVEAARCGIWDWDLEQDLIYMSDVTGVMLGWGGGGVA 359

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
                ++ +    +     A+    L  +                  ++           
Sbjct: 360 TTGEFVNRVAPEHRADVMKALDSARLKGA------FDVSFRVPNAEGKSIWVDVRGQSVG 413

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
           A      +  NG+  +  D R+ + + +    +L   + + SD   + +R   +L  N+ 
Sbjct: 414 ARNQLGFLRLNGVALDVSDERMAQSRAQRAEARLLDAINSVSDAFVLWDRRHRLLMWNKT 473

Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
             + FG     +        ++Q     +  +  +          E          + + 
Sbjct: 474 FGETFGIDERFLRVGTPRELIDQVMQIAIRRH--QPAPDARDGVYEAEL----NNGRWIQ 527

Query: 541 LRIIIKKLPFSSCYSLTMHDIS----------------------------EWKQEKNKLS 572
           +              LT  DI+                            +      K  
Sbjct: 528 IAESRTL---EGGRVLTGTDITAVKIQEEFRRRNEEELQALVQKLEQARQQQMILARKYE 584

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
            AK  AE  +  KS+FLA +SHE+RTPL AI GFSE++  + FGPLG+ RY EYA  I  
Sbjct: 585 MAKIRAEAANHAKSEFLANMSHELRTPLNAINGFSEIMATEMFGPLGHARYKEYAGDILG 644

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
           SG  +L ++ND+LD+SKIE+GKM L  EPVSLDE + + + LV+  A +  + IR     
Sbjct: 645 SGQHLLSLINDILDMSKIEAGKMTLRIEPVSLDEVIEDTLRLVRQRAEKAGLKIRVHM-P 703

Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752
            +P I AD R++KQI LN+L+NAI FTP  G + IS   T N  V + V DTG+G+   +
Sbjct: 704 QLPEIEADFRALKQILLNLLTNAIKFTPQHGTVTISAAMTDNN-VHIAVADTGIGIAAKD 762

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
           +E+  +PF QI N      EGTGLGL L K++++ + G+  I ST  +GT + +I P+  
Sbjct: 763 MERLARPFEQIENQFSKTKEGTGLGLALTKSLIEMHSGRLEIDSTEGQGTTVNVILPIRQ 822

Query: 813 TSH 815
           T  
Sbjct: 823 TGQ 825


>gi|330963166|gb|EGH63426.1| two-component sensor/regulator [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 576

 Score =  350 bits (897), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 124/573 (21%), Positives = 217/573 (37%), Gaps = 51/573 (8%)

Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP-----IPFFVYSHGNLFYANP 346
           L     E       R    + +   +    T    D               HG +   N 
Sbjct: 2   LNPPVDEPTTETQSRAEKIVESRRQKTLLKTGALQDAIFNSAYFSSIATDEHGVIQIFNV 61

Query: 347 SFLLLTKYKSVDDIEIAGGLS-----TLLDAPKLSDNNAIKPVM-----LYRSDRTCIAA 396
               +  Y S D ++            L+       +    P+      L       I  
Sbjct: 62  GAERMLGYHSEDVVDKITPADISDPAELIIRAAALSHELNTPITPGFEALVFKASRGIED 121

Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK-------RKMEI 449
              L  I+ +     AM        +     +    I  ++   +  +       +++  
Sbjct: 122 IYELTYIRKDGSRLSAM-VSVTSLRDSAETIIGYLLIGTDNTARKQEEETQALLDQRLRD 180

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
           +     S++E+  D + + + +GII   N+ +  L G   ++++  P   F     P+  
Sbjct: 181 QQFYTRSLIESNIDALMMTDPQGIISDVNKQMMALTGRTRDELIGAPCKNFF--TDPASA 238

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQE 567
           +  +  +LS       E         E ++S                     D++E K+ 
Sbjct: 239 DAAIKRVLSEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRKLKGVFAAARDVTERKRF 298

Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
           +  L       E  S  KS+FLA +SHE+RTPL A+IGFSE +K+   G + +     Y 
Sbjct: 299 ERTLEEKNIELEHASHMKSEFLATMSHELRTPLNAVIGFSEALKDGMVGDMTDA-QRRYI 357

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
             I  S   +L ++ND+LD+SK+E+G M L  E V LDE +S ++ +V+  A  +RI ++
Sbjct: 358 GDIFNSSQHLLSLINDILDLSKVEAGMMLLELEAVDLDELLSNSLLIVREQAALQRIQLK 417

Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV---------- 737
                +   +  D R  KQI  N+L+NA+ F+  GG + ++    S  +V          
Sbjct: 418 LETEADFGVLELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRQVSRAQVGILGGDWPVH 477

Query: 738 -------------ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
                         + V DTG+G+   ++ K  K F QI +S   + EGTGLGL + K +
Sbjct: 478 SFPLPPGDYEHFLQVSVSDTGIGIAQSDMNKLFKAFSQIDSSLARKFEGTGLGLAMVKQL 537

Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
            + + G   + S    G    +  P+   +   
Sbjct: 538 TELHGGCVAVASVKDLGARFVVWLPIRPPATEE 570



 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/230 (11%), Positives = 63/230 (27%), Gaps = 7/230 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            D  G + ++++++    G    ++IG    +         +  I  +L        + T
Sbjct: 199 TDPQGIISDVNKQMMALTGRTRDELIGAPCKNFFTDP-ASADAAIKRVLSEHKVSDYELT 257

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           +   +GT     +   A   + R+R+  G   F                +  + +  H  
Sbjct: 258 VRAYDGTETV--VSYNAATFHDRDRKLKGV--FAAARDVTERKRFERTLEEKNIELEHAS 313

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK-VSSLTEYYAHKDDVLKTEKYPLLTSEES 267
            +K    +    +              +K+  V  +T+        +      LL+    
Sbjct: 314 HMKSEFLATMSHELRTPLNAVIGFSEALKDGMVGDMTDAQRRYIGDIFNSSQHLLSLIND 373

Query: 268 SLP-EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
            L   + +   + L             +      +    R    L    D
Sbjct: 374 ILDLSKVEAGMMLLELEAVDLDELLSNSLLIVREQAALQRIQLKLETEAD 423



 Score = 45.0 bits (105), Expect = 0.057,   Method: Composition-based stats.
 Identities = 35/407 (8%), Positives = 100/407 (24%), Gaps = 48/407 (11%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGM-RLCDVSDILHI------------DPNNHIGD 135
            D HG ++  +    + +G ++  ++      D+SD   +             P     +
Sbjct: 50  TDEHGVIQIFNVGAERMLGYHSEDVVDKITPADISDPAELIIRAAALSHELNTPITPGFE 109

Query: 136 LL----KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN 191
            L     R      + T    +G+   +   ++   +        G+   G  +  R   
Sbjct: 110 ALVFKASRGIEDIYELTYIRKDGS--RLSAMVSVTSLRDSAETIIGYLLIGTDNTARKQE 167

Query: 192 DP-----RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSSLT 244
           +          +        L E       +   +  I            R ++++    
Sbjct: 168 EETQALLDQRLRDQQFYTRSLIESNIDALMMTDPQGIISDVNKQMMALTGRTRDELIGAP 227

Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
                 D          + SE      +      +  +        T  +  ++     +
Sbjct: 228 CKNFFTDPASADAAIKRVLSEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRKLKGVFA 287

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364
                +    F+         ++               +    FL    ++    +    
Sbjct: 288 AARDVTERKRFERTLEEKNIELEHAS------------HMKSEFLATMSHELRTPLNAVI 335

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
           G                      R       +S  L ++  +    L ++ +        
Sbjct: 336 G----FSEALKDGMVGDMTDAQRRYIGDIFNSSQHLLSLIND---ILDLSKVEAGMMLLE 388

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471
            E +  + +    +     +  ++   ++L +       G+  ++R 
Sbjct: 389 LEAVDLDELLSNSLLIVREQAALQRIQLKLET---EADFGVLELDRR 432


>gi|83310211|ref|YP_420475.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82945052|dbj|BAE49916.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 687

 Score =  350 bits (897), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 109/421 (25%), Positives = 176/421 (41%), Gaps = 23/421 (5%)

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG-IAIINR 470
            +                    + E+ +  +++   +    Q  ++L+A     I   + 
Sbjct: 14  LLRGEIRVAREAAEITARLVVKQFEETERLLDRF--QSANAQRQAVLDAALQMSIIATDM 71

Query: 471 EGIILSTNRAVSKLFGYPVEDILRKP-FTVFLEQNTPSVMNHYLTEILSLDLRQ------ 523
            G +L  NR    L GY  ++++ +     FL     +     L   L   +        
Sbjct: 72  NGKVLLFNRGAETLLGYASDEVVGQSTLLDFLLPEEVAAHADELAAELGHAVSPETLFAE 131

Query: 524 ------TLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSH 573
                    +      K+     + + I  L               DI+E K  + +   
Sbjct: 132 YVRHGLISAREWTYRRKDGTRFPVSLSITPLKGGDGGLAGTLAAAMDITERKWAEEEAHR 191

Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
           AK+ AE  +  KS FLA +SHE+RTPL AIIG+SE+++ +    LG    I     I  +
Sbjct: 192 AKQAAEAANQAKSSFLANMSHELRTPLNAIIGYSEMLQEE-MEDLGQDDLIPDLAKIHSA 250

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693
           G  +L ++ND+LDISKIE+GKM+L  E   +   V++ ++ +     +    +    A  
Sbjct: 251 GRHLLTLINDVLDISKIEAGKMDLFVEAFEIAPMVADVVATISPLIQKNGNTLVVDGAGE 310

Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753
           I  + ADL  V+Q   N+LSNA  FT  G  I +ST     E +   V DTG+GM   EL
Sbjct: 311 IGAMEADLTKVRQTLFNLLSNASKFTSDG-TITLSTR-RQGEWIEFAVADTGIGMAPAEL 368

Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
           ++  + F Q   S   +  GTGLGL +++       G   + S P +GT   +  P    
Sbjct: 369 DRLFQAFSQADASTTRKFGGTGLGLAISRTFCRMMGGDIAVASEPGRGTTFTVRLPAVSA 428

Query: 814 S 814
           S
Sbjct: 429 S 429



 Score = 51.2 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 37/412 (8%), Positives = 103/412 (25%), Gaps = 48/412 (11%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMR-------LCDVSDILH---------IDPNNH 132
            D +G +   +      +G  + +++G           +V+             + P   
Sbjct: 69  TDMNGKVLLFNRGAETLLGYASDEVVGQSTLLDFLLPEEVAAHADELAAELGHAVSPETL 128

Query: 133 IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192
             + ++       + T    +GT    P+ L+  P+   +   +G     +         
Sbjct: 129 FAEYVRHGLISAREWTYRRKDGT--RFPVSLSITPLKGGDGGLAGTLAAAM--DITERKW 184

Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD 252
                 R  +     ++ K    +    +              ++ ++  L +     D 
Sbjct: 185 AEEEAHRAKQAAEAANQAKSSFLANMSHELRTPLNAIIGYSEMLQEEMEDLGQDDLIPDL 244

Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN----- 307
                    L +  + + +        ++ + +      +  +   +   L  +N     
Sbjct: 245 AKIHSAGRHLLTLINDVLDISKIEAGKMDLFVEAFEIAPMVADVVATISPLIQKNGNTLV 304

Query: 308 ---HPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEI-- 362
                 + A   +   +     +         S G +  +        ++   D      
Sbjct: 305 VDGAGEIGAMEADLTKVRQTLFNLLSNASKFTSDGTITLSTRRQGEWIEFAVADTGIGMA 364

Query: 363 AGGLSTLLDAPKLSDNNAIK-----------PVMLYRSDRTCI-----AASARLHTIQWN 406
              L  L  A   +D +  +                R     I            T++  
Sbjct: 365 PAELDRLFQAFSQADASTTRKFGGTGLGLAISRTFCRMMGGDIAVASEPGRGTTFTVRLP 424

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE--VMQLCS 456
             ++      P       PE      I+ + V   +  R ++      +  +
Sbjct: 425 AVSASPKAARPAGAIESGPELPLVLVIDDDAVARDLLGRFLDENGFRARFAA 476


>gi|254472050|ref|ZP_05085451.1| multi-sensor signal transduction histidine kinase [Pseudovibrio sp.
           JE062]
 gi|211959252|gb|EEA94451.1| multi-sensor signal transduction histidine kinase [Pseudovibrio sp.
           JE062]
          Length = 744

 Score =  350 bits (897), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 127/675 (18%), Positives = 255/675 (37%), Gaps = 74/675 (10%)

Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP---HLRMKNKVSSLTE------ 245
           AL + L +        +     +      I +     P    L++ + +           
Sbjct: 66  ALQRALSEALPPRATSQSRQILLTDPNGTIVASAPTRPDMEGLKITSFLGDTQPMTFFGK 125

Query: 246 --------YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY--FGTLQNN 295
                                 P      + +  ++   +    + +        T    
Sbjct: 126 RAGVLTINEGTKDATRATVHHLPNKLGMVAIMQPEDAIFSSWRAELSANVTIFVATSMVL 185

Query: 296 SKESFEYLSHRNHPSLSAYF-DEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTK 353
               + Y +       +        +     +++     F +       + + S   +  
Sbjct: 186 LVIIYAYFAQATRAQQADGIYAATRSRIDAALNRGRCGLFDWDLSRGRVFWSASLYEMLG 245

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
               +DI     + +L     +   +  K ++             R   ++    + + +
Sbjct: 246 MDPRNDIMGFAEIQSLTHPDDVDLYDLAKSLLDTGKSNVD-----RQWRMRHIDGSWVWL 300

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
                 + +         GI  +  + ++   +     ++L   +E  S+   + + +  
Sbjct: 301 RVRAEVQTDAGTNEPHLIGICMDVTEQKMLAEQSRTADLRLRDAIENISEAFVLWDADNH 360

Query: 474 ILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
           ++  N    KL   P   +    P+   +   +  +++          +   +E      
Sbjct: 361 LVMCNSNYRKLHQLPDHVVQAGTPYATVMSSASQPIISEPEEG---DHIDSDMESSYKVE 417

Query: 533 TKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKK---------------- 576
            +  + L +    ++      +     DI+E K+++ KL  +++                
Sbjct: 418 MEGGRWLQVS---ERRTKDGGFVSVGTDITELKRKEEKLLESERGHMATIADLRQSRQKL 474

Query: 577 -------------------IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
                               AE  +  KS+FLA +SHE+RTPL AIIGFSE++    FG 
Sbjct: 475 ELQAQQLVELTEKYADEKTRAEDANQAKSEFLANISHELRTPLNAIIGFSEIMDQGMFGD 534

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
           LG+ +Y EY   I  SGN +L+++ND+LD+SKIE+G++ L  E V + + V +A  ++  
Sbjct: 535 LGSDKYKEYCKDIHSSGNYLLNVINDILDMSKIEAGRIELSVEDVQIQQIVQDAARIISA 594

Query: 678 YANEKRILIRTSFANNIPRIL--ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
            A EK I +      N+P +   AD R+VKQI LN+L+N++ FTP  G++ +S       
Sbjct: 595 TAAEKNIKV---VNENLPHMHLQADRRAVKQILLNLLANSVKFTPENGEVRVSARKV-GA 650

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
              L++ D G+G+   ++++  KPF Q+ N      +G+GLGL +A+++ + + G   I 
Sbjct: 651 FAELKITDNGIGIAKKDIDRLAKPFVQVENQFTKTHKGSGLGLAIARSLSELHGGYMEID 710

Query: 796 STPAKGTLIEIIFPL 810
           S   KGT + I  PL
Sbjct: 711 SEVGKGTEVTIKLPL 725


>gi|189423629|ref|YP_001950806.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189419888|gb|ACD94286.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 893

 Score =  350 bits (897), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 112/579 (19%), Positives = 204/579 (35%), Gaps = 24/579 (4%)

Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
           H D  +         S    L          L           L      +     +   
Sbjct: 178 HADTRIPVGGIRGGISAAVPLAPHLQAGESGLRGVRLAHGGIWLAGMIGITIASAIYLRQ 237

Query: 309 PSLSAYFDEGENLTPETVDKC----PIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIA 363
             LS   ++                P   F     G   Y N  +  +        +   
Sbjct: 238 QRLSQQAEDDLRAQEALYASLTTASPTGVFQADLHGAYCYVNDRWSAIAGLPFEQALGE- 296

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
           G L  L    ++      +      +     +   R             +     E  + 
Sbjct: 297 GWLQALHPEDRVR---VSEEWQHSVAGDCPFSLEFRFVR---PDGTVAWVYGQSAEIFDS 350

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
               +   G   +    +  +  +  + + L              N +  +LS    +  
Sbjct: 351 KGGIVGYVGTITDISIRKKAEATLAEQALFLRESQSIAHLAGWKSNPDSDLLSWTDEMYH 410

Query: 484 LFGYPVED-ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
           +  +P ++ I       + +     ++   L E +       L    + +         R
Sbjct: 411 MLDHPQDEPISHVACFRYFDPQDLPMVEKALQEAMRNGTPFKLSCRMVSARGRRFWADFR 470

Query: 543 IIIKKLPFSSCYSL-TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
            I +       Y   T+ DISE KQ +  L  AK++AE  S  K++ LA +SHE+RTPL 
Sbjct: 471 CIGRMDGPDGGYIGGTLQDISEHKQIEELLISAKEMAEATSRAKTELLATLSHELRTPLN 530

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
            ++G  ++++             EY   +  S    L +VNDLLD++ +E+  + +   P
Sbjct: 531 GVMGGVQLLEMTDLSA----DQEEYLQMVRTSATNELALVNDLLDLAGLEASGLKVESTP 586

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTP 720
            +L E++  AI+L +     + + + TS   ++ + ++ D R + QI  N+L NAI FT 
Sbjct: 587 FNLLESIKLAITLHRSALETRGLPLVTSLPESLAQLVIGDGRRLTQIVSNLLGNAIKFTE 646

Query: 721 SGGQIIISTTHTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
            GG I ++   T        + +RV DTG+G+   +L++  +PF Q   S   R  GTGL
Sbjct: 647 QGG-ISLAADCTPCGGSELRLQVRVSDTGIGIAEKDLQRIFEPFVQADMSSTRRFGGTGL 705

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
           GL +   + +   G   + S P +G+   +  P    + 
Sbjct: 706 GLAICHRLAERMGGSIRVDSIPGEGSSFTLELPFLAAAA 744



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 16/210 (7%), Positives = 47/210 (22%), Gaps = 12/210 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH-IDPNNHIGDLLKRQNTWY 144
            +  D HG    +++      G    + +G            +  +      +     + 
Sbjct: 266 VFQADLHGAYCYVNDRWSAIAGLPFEQALGEGWLQALHPEDRVRVSEEWQHSVAGDCPFS 325

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            +      +GT     +   +  I+       G+   G +    +     A         
Sbjct: 326 LEFRFVRPDGT--VAWVYGQSAEIFDSKGGIVGY--VGTITDISIRKKAEATLAEQALFL 381

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSP------PPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
                I            D+ S           P     + V+    +      +++   
Sbjct: 382 RESQSIAHLAGWKSNPDSDLLSWTDEMYHMLDHPQDEPISHVACFRYFDPQDLPMVEKAL 441

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQY 288
              + +  +         +    ++     
Sbjct: 442 QEAMRNG-TPFKLSCRMVSARGRRFWADFR 470


>gi|170727319|ref|YP_001761345.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
 gi|169812666|gb|ACA87250.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
          Length = 1340

 Score =  350 bits (897), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 97/396 (24%), Positives = 175/396 (44%), Gaps = 12/396 (3%)

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
             +   +      +       +  + K+  ++     IL+A  + +   N +   +  N 
Sbjct: 434 VKDVIDDLAIGVQLTRNLELQKKTELKVVEQLELNRQILDAIPNPMYYRNVDSEYIGVNE 493

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
           + +  FG    DI+        E  T         ++L        E   + +   ++ +
Sbjct: 494 SFTSFFGLFEADIIGSTPKDIFEAETAQQFEDSEAKLLENIGSLDYEARLVNADGIQRDV 553

Query: 540 SLRIII--KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
            +            +     + D++E KQ + +L  AK+ A++ S  K DFLA +SHEIR
Sbjct: 554 MVYEATFFSTKGDPNGVVGLLLDVTERKQMEVELRKAKEAADEVSKAKGDFLANMSHEIR 613

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TP+ AIIG S +  N       NP+   Y + ID +   +L I+ND+LD SK+E+GK+  
Sbjct: 614 TPMNAIIGMSHLALNADL----NPKQRGYVSKIDMAAKSLLGIINDILDFSKMEAGKLVT 669

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAI 716
                 LDE +    +++ + A EK +        +IP  ++ D   + Q+ +N+  NAI
Sbjct: 670 EDVDFRLDEVLDNLTNIIAVKAEEKGLEFLFDIDPHIPLALVGDPLRIGQVLINLCGNAI 729

Query: 717 HFTPSGGQIIISTTH----TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
            FT SG ++++             +   VRD+G+G++  + +K  K F Q   S   +  
Sbjct: 730 KFTDSG-EVVVGVKLLNKSEDGLNLQFNVRDSGIGLSQEQQDKLFKSFSQADASITRKYG 788

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           GTGLGL ++K +V+   GK ++ S   +G+      
Sbjct: 789 GTGLGLTISKRLVEIMGGKIWVTSDEGQGSTFSFTL 824


>gi|262274200|ref|ZP_06052012.1| hypothetical protein VHA_001176 [Grimontia hollisae CIP 101886]
 gi|262222010|gb|EEY73323.1| hypothetical protein VHA_001176 [Grimontia hollisae CIP 101886]
          Length = 1343

 Score =  350 bits (897), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 96/407 (23%), Positives = 177/407 (43%), Gaps = 14/407 (3%)

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE-VMQL---CSILEATSDGIAI 467
           A+  +  ++ +   E      +  +       + + E     QL     I+ A  +    
Sbjct: 417 AVRLLSDKEMDWLSEMQEDLAVGIQLTLNAEMQMEAEQRISEQLKLNQQIINAIPNPTYF 476

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
            + +G  +  N A +   G    D++ K       ++  ++      E+           
Sbjct: 477 RDTQGAYIGVNDAFTDFLGLFYIDVVDKTPLELFAKDVANMFTEKERELFENPGSTVYNI 536

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
               S  + ++L++                    D+++ K+ ++ L  AK  A + S  K
Sbjct: 537 ELANSHGDVRILNVYEATYYGTDGDPMGIVGLFVDVTKQKRLESDLIAAKDQATEASKAK 596

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
            +FLA +SHEIRTP+ AI+G S +          N +   Y   I+++G  +L I+ND+L
Sbjct: 597 GEFLANMSHEIRTPMNAILGMSHLALLTDL----NDKQRNYVGNIEKAGKSLLGIINDIL 652

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSV 704
           D SKIE+GK+++        E +    +++ + A EK + +      N+P  ++ D   +
Sbjct: 653 DFSKIEAGKLSVEHVDFRFSEVLDNISNIISVKAKEKELELIFDIDPNLPDDLVGDPLRL 712

Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI---LRVRDTGVGMTNYELEKAMKPFG 761
            QI +N+  N++ FT SG  II +   T   E+I     + DTG+GM   +L +  + F 
Sbjct: 713 GQIIINLTGNSVKFTESGEIIIRARKVTDVNEIIEIQFDIEDTGIGMNEEQLGRLFQSFS 772

Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           Q   S   +  GTGLGL ++K+ V+   G+ ++ S P KG+      
Sbjct: 773 QADGSITRKYGGTGLGLTISKSFVELMGGRIWVESQPGKGSTFSFTI 819


>gi|323494892|ref|ZP_08099984.1| sensory box sensor histidine kinase/response regulator [Vibrio
           brasiliensis LMG 20546]
 gi|323310856|gb|EGA64028.1| sensory box sensor histidine kinase/response regulator [Vibrio
           brasiliensis LMG 20546]
          Length = 1318

 Score =  350 bits (897), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 97/383 (25%), Positives = 169/383 (44%), Gaps = 11/383 (2%)

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
           +       R  ++K+  +      IL AT + +  ++ +G  L+ N   S+L G P+++I
Sbjct: 452 LSQNIELQRKAEQKVLEQSQLNQEILNATPNPMYCLSPQGKYLTVNAKFSELCGLPMQEI 511

Query: 493 LRKPFTVFLEQNTP-SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL-RIIIKKLPF 550
           + K       Q       +    +++     +  E   L    + + + +          
Sbjct: 512 IGKTPQQVFSQQDASQCFSETHQQLILQQGSKNYELSLLDQHLQTRDMLVCEASFNNSHG 571

Query: 551 -SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
             S     + D++E K  + +L  AK+ A+  S  K +FLA +SHEIRTP+  I+G   +
Sbjct: 572 KVSGIVGILLDLTERKLMETELRDAKETADAMSRAKGEFLANMSHEIRTPMNGILGMVHL 631

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
             N    P       +Y   I+ S   +L I+ND+LD SKIE GK+N+     SLDE   
Sbjct: 632 ALNTELDPA----QHKYLTRINESAKNLLGIINDILDFSKIEVGKLNIETIDFSLDEVFD 687

Query: 670 EAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI--- 725
              +++ L A EK+I         +P  ++ D   + Q+ +N+  NA+ FT  G  +   
Sbjct: 688 NLTNVISLKAQEKKIEFLLDIDPQVPTGLIGDPLRIGQVLVNLCGNAVKFTEQGEVVVAV 747

Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
            I      +  +   V+DTG+G+   ++      F Q  +S      GTGLGL ++K +V
Sbjct: 748 RIELLTERDVVLHFSVKDTGIGIDKEKIAHLFDAFSQADSSITREFGGTGLGLSISKQLV 807

Query: 786 DANMGKFYIFSTPAKGTLIEIIF 808
           +   G+  + ST   G+      
Sbjct: 808 ELMGGQLSVSSTLGAGSTFAFTI 830


>gi|307153439|ref|YP_003888823.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7822]
 gi|306983667|gb|ADN15548.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7822]
          Length = 1258

 Score =  350 bits (897), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 109/759 (14%), Positives = 236/759 (31%), Gaps = 63/759 (8%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCD-VSDILHIDPNNHIGDLLKRQNTWYGKT 147
            +DA+   +  +    +  G    ++ G  + + + D L+ D    I  +LK +   Y + 
Sbjct: 524  VDANECYRFNNGRYEQWFGIPIEQIKGKTIKETIGDKLYQDIRPRIEQVLKGEEVSYEQE 583

Query: 148  TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
               PI        I    +P +    +  GF    +++            +  +++F  +
Sbjct: 584  IFLPIGECRY---IRANYVPRFDGEGKVEGF--VALINDITDRKRIEDNLRESEERFRMM 638

Query: 208  HEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT- 263
                     V  E                   + ++        H +DV +     L   
Sbjct: 639  ANSSPVMIWVSDETGGRTFVNQTWLNLSGRSFQEELGDGWTKSLHPEDVSRCLDTYLYAL 698

Query: 264  SEESSLPEQEDFHTINLNQYTKKQY-------FGTLQNNSKESFEYLSHRNHPSLSAYFD 316
                    +      N       +        F           +    +         +
Sbjct: 699  DAHQPFEIEYRIKAANGEYRWILERGCPRFTKFAKFSGYIGSCTDVTERQRALQALQESE 758

Query: 317  EGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
            +      + +D       +      + Y N     L  +   +              P+ 
Sbjct: 759  QALQQHAQMLDLANDSIIICDLDESIAYWNQGAERLYGWTKAEVQGQRINSLLKTVFPQS 818

Query: 376  SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
                      L               T      + + ++     + N   + +    I  
Sbjct: 819  ISEIHDILKTLGYWQGEL--------TQTREDGSQIVVSSRWTLQYNSDGQPIAILAISD 870

Query: 436  EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
            +  + +  +  +     +   I E  + G++++N EG  L  N  +S + GY  E++L  
Sbjct: 871  DITERKQVEAALLRSEERFRGIFEQAAVGMSLLNLEGRWLRVNHKLSLIVGYSPEELLEM 930

Query: 496  PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-- 553
             F             +Y+ ++L+    +T         +++ L+ + I +  +  +    
Sbjct: 931  TFQEITYPEDLETNLNYVRQLLA-GEIETYSMEKRYIRRDQSLIWVEITVSLVREAGHSS 989

Query: 554  --------YSLTMHDISEWKQEKNKLSHA--------------KKIAEKESSHKSDFLAR 591
                    +   + +I E KQ +  L                   + +K +     F   
Sbjct: 990  QQIGQPQYFITVVEEIGERKQAERALQERAVELTSLNTVLASTTAMLQKRNQELDQFAYI 1049

Query: 592  VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
            VSH+++ PL AI   SE I+      L      +      +    + +++N +L+ S++ 
Sbjct: 1050 VSHDLKAPLRAIANLSEWIEEDLQAELPPENQQQLQLL-RQRVYRMENLINGVLEYSRV- 1107

Query: 652  SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
             G+     E  S+ E +++ I  +                + +P +      + QI  N+
Sbjct: 1108 -GRKETTIETFSVLELLTDVIDSLSPPP-----TFTIEIVSPMPTLTGIKLFLGQIFSNL 1161

Query: 712  LSNAIHFTP-SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
            + NAI+  P + G + IS            V D G G+     ++    F  +  S   +
Sbjct: 1162 IGNAINHHPRADGHVWIS-AKELENFYEFAVSDDGKGIAPEHHQRIFGIFQTLEKS--EK 1218

Query: 771  GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             E TG+GL + K +V+   G   + S   +GT     +P
Sbjct: 1219 PESTGIGLAIVKKIVELQGGNITVESEVNQGTTFHFSWP 1257



 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 63/523 (12%), Positives = 146/523 (27%), Gaps = 44/523 (8%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYA-FKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
           + +D       I+    + I   A  +++G  +  V   +           L +Q +   
Sbjct: 148 FTVDHQWGFTYINH-HCEMIFERAKQELLGQNIWQVLPEVEATVYEQFHQALAQQRSIRL 206

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI-VHVNRVDNDPRALGKRLDKKF 204
           + +++    +      ++ A PI          +G  + V             K  + +F
Sbjct: 207 EKSIF----SQSEQYYEIRAYPI---------PKGLAVYVLDVTEQRLANRQLKESELRF 253

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL-------TEYYAHKDDVLKTE 257
             L E       +   +       SP           SL        +    +D     +
Sbjct: 254 RQLAENIDQVFWISSAQKANLLYISPAYQTIWGKSCDSLYEFPRSWLDSVHPEDQQRVAK 313

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
               L S +    E       +            +++ +   +         +     +E
Sbjct: 314 ATEKLRSTQEDFKEDYRIIRPDGEIRWIAARTFFIRDENGNKYRVAGLAEDITERKRAEE 373

Query: 318 G----ENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                E      V+       F  + G + YAN  +L +  Y   +          +  A
Sbjct: 374 ANKESERRFRRLVESNLFGVAFANTQGKVHYANDYYLRMLGYTQQELQAGLISWERMTPA 433

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
             L  +     +   +      A            +    +    F       +     G
Sbjct: 434 EWLPLDFK--ALEELKIKGVATAFEKEYF--HKKGQRVPILIGAAFLDEPYS-KATEMIG 488

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
              +    +  ++ ++    +L  I +A    IA ++        N    + FG P+E I
Sbjct: 489 FFLDLTRVKEAEKALQRREEELHLIADAAPALIAYVDANECYRFNNGRYEQWFGIPIEQI 548

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS- 551
             K     +       +   + ++L  +     E+       E + +    + +      
Sbjct: 549 KGKTIKETIGDKLYQDIRPRIEQVLKGEEVS-YEQEIFLPIGECRYIRANYVPRFDGEGK 607

Query: 552 -SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
              +   ++DI++ K+ ++ L        +ES  +   +A  S
Sbjct: 608 VEGFVALINDITDRKRIEDNL--------RESEERFRMMANSS 642



 Score = 91.2 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 35/420 (8%), Positives = 97/420 (23%), Gaps = 29/420 (6%)

Query: 56   DQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIG 115
            D         N  +SE  F        V   W  D  G    +++      G    + +G
Sbjct: 617  DITDRKRIEDNLRESEERFRMMANSSPV-MIWVSDETGGRTFVNQTWLNLSGRSFQEELG 675

Query: 116  MRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNRE 174
                       +    +     L     +  +           Y  I     P +++  +
Sbjct: 676  DGWTKSLHPEDVSRCLDTYLYALDAHQPF--EIEYRIKAANGEYRWILERGCPRFTKFAK 733

Query: 175  FSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK----KGHSSVEKEKYDIFSQQSP 230
            FSG+   G               +  ++      ++           + ++   +  Q  
Sbjct: 734  FSGY--IGSCTDVTERQRALQALQESEQALQQHAQMLDLANDSIIICDLDESIAYWNQGA 791

Query: 231  PPHLRMK--NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288
                                         +   +         +      + +Q      
Sbjct: 792  ERLYGWTKAEVQGQRINSLLKTVFPQSISEIHDILKTLGYWQGELTQTREDGSQIVVSSR 851

Query: 289  FGTLQNNSKESFEYLSHRNHPSLSAYFD----EGENLTPETVDKCPIPF-FVYSHGNLFY 343
            +    N+  +    L+  +  +     +      E       ++  +    +   G    
Sbjct: 852  WTLQYNSDGQPIAILAISDDITERKQVEAALLRSEERFRGIFEQAAVGMSLLNLEGRWLR 911

Query: 344  ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD-RTCIAASARLHT 402
             N    L+  Y   + +E               ++       + +         S     
Sbjct: 912  VNHKLSLIVGYSPEELLE------MTFQEITYPEDLETNLNYVRQLLAGEIETYSMEKRY 965

Query: 403  IQWNRENSLAMTFIPFEKANQ-----FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
            I+ ++        +   +          +      +  E  + +  +R ++   ++L S+
Sbjct: 966  IRRDQSLIWVEITVSLVREAGHSSQQIGQPQYFITVVEEIGERKQAERALQERAVELTSL 1025



 Score = 64.3 bits (155), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 19/147 (12%), Positives = 53/147 (36%), Gaps = 7/147 (4%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +  +  +E+   Q+  ILE+ ++G   ++ +      N     +F    +++L +     
Sbjct: 123 QEKEALLEMTNTQVSQILESITEGFFTVDHQWGFTYINHHCEMIFERAKQELLGQNIWQV 182

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
           L     + +     + L+      LEK        E+   +R            ++ + D
Sbjct: 183 L-PEVEATVYEQFHQALAQQRSIRLEKSIFSQ--SEQYYEIRAYPIP----KGLAVYVLD 235

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSD 587
           ++E +    +L  ++    + + +   
Sbjct: 236 VTEQRLANRQLKESELRFRQLAENIDQ 262


>gi|329888197|ref|ZP_08266795.1| non-motile and phage-resistance protein [Brevundimonas diminuta
           ATCC 11568]
 gi|328846753|gb|EGF96315.1| non-motile and phage-resistance protein [Brevundimonas diminuta
           ATCC 11568]
          Length = 420

 Score =  350 bits (897), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 119/418 (28%), Positives = 199/418 (47%), Gaps = 41/418 (9%)

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490
            G+  +  + R  K + +    +L   +E+ SD   + +R G ++  N+     F +P  
Sbjct: 1   MGVALDVTEARRTKAQAQAAESRLRDAIESVSDAFVLFDRRGRLILWNQGFQDAFAFPKG 60

Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
            +  +P     E N  +          +       E       K+ + L +    ++   
Sbjct: 61  VV--RPGAQKDELNRIAAEAIKAEHPSAGGRAGVREVEL----KDGRWLQM---AERFTG 111

Query: 551 SSCYSLTMHDIS--------------EWKQEKNKLSHAK--------------KIAEKES 582
                +   DI+              E +    +L  ++                AE  +
Sbjct: 112 DGGTVVICADITVIRRQEAERRRAADELRAMVAELEASQANLALLARKYEVAMTRAEAAN 171

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
             KS+FLA +SHE+RTPL AI GFSE++  + FGPLG+ RY  YA  I  SG  +L ++N
Sbjct: 172 QAKSEFLANMSHELRTPLNAINGFSEIMAAEMFGPLGDRRYKGYAADIHGSGQHLLSLIN 231

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702
           D+LD++KIE+GK+ LH+EP++LD   +EA+ L++  A E ++ +      ++  I AD R
Sbjct: 232 DILDMAKIEAGKLTLHYEPMALDVLCAEAVRLMRGKAQEAQLALTLDCPEDL-HIEADQR 290

Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
            +KQ+ LN++SNA+ FTP GG + +         V + V DTG+G+   +LE+  +PF Q
Sbjct: 291 GLKQVLLNLISNAVKFTPEGGAVSVKVAPRDAATVRVSVVDTGIGIAAKDLERLAQPFEQ 350

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820
           +        +GTGLGL L K++++ + G   I S P +GT +    P   T  P   +
Sbjct: 351 VEGQHSKSTQGTGLGLALTKSLIELHGGAMTIESEPGRGTTVWFDLP---TRAPEGAV 405


>gi|159045886|ref|YP_001534680.1| multi-sensor hybrid histidine kinase [Dinoroseobacter shibae DFL
           12]
 gi|157913646|gb|ABV95079.1| multi-sensor hybrid histidine kinase [Dinoroseobacter shibae DFL
           12]
          Length = 781

 Score =  350 bits (897), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 107/376 (28%), Positives = 176/376 (46%), Gaps = 16/376 (4%)

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
              R  E E   L  +    +D + + +R G I   N + +++ GY VE+ L +     L
Sbjct: 243 QTLRAREREARHLAMVAANANDSVIVTDRAGHIEYVNASFTRVTGYTVEEALGRTPAELL 302

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLT 557
                         + +    + +    +  TK  K + +   I  +  S          
Sbjct: 303 NGPNTDT-EAIEAILNARRTHEPVRLELINRTKFGKDIWVETNITPMMDSDGNVVGEVAI 361

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
             DI++ KQ + +L+ AK  AE+ +  K+ FLA +SHEIRTPL  IIG S+V+ +     
Sbjct: 362 ERDITQAKQREQELAAAKTAAEEGARAKAQFLAMISHEIRTPLNGIIGMSDVMLSGPL-- 419

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
             +P +      I  SG  +L I+ND+LD+SK+E+GKM +   P  L   +  A+ LV+ 
Sbjct: 420 --DPEHRGNLQTILASGEGLLTIINDILDLSKLEAGKMEIDQLPFDLRAELQAALDLVRP 477

Query: 678 YANEKRILIRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
            ANEK + +    +  +P   IL D   V+Q+ LN++ NAI FT +G  + +     +  
Sbjct: 478 LANEKGLSLSVDVS-GLPEGRILGDPGRVRQVFLNLMGNAIKFTRAGA-VSLRAAVDTGA 535

Query: 736 ---EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
               V L V+DTG+G+    L++    F Q  ++      GTGLGL +++ +     G  
Sbjct: 536 APPRVTLAVQDTGIGIPADRLDQIFDAFAQADSATTRDFGGTGLGLAISRQLTQQMGGDI 595

Query: 793 YIFSTPAKGTLIEIIF 808
            + S P KG+   + F
Sbjct: 596 TVTSVPGKGSCFTMEF 611



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 26/258 (10%), Positives = 64/258 (24%), Gaps = 20/258 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTWYGK 146
            D  G+++ ++    +  G    + +G    ++ +  + D      I +  +       +
Sbjct: 269 TDRAGHIEYVNASFTRVTGYTVEEALGRTPAELLNGPNTDTEAIEAILNARRTHEPVRLE 328

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                  G +  + ++    P+   +    G     I                       
Sbjct: 329 LINRTKFGKD--IWVETNITPMMDSDGNVVG--EVAIERDITQAKQREQELAAAKTAAEE 384

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
               K    ++          ++P   +   + V             L+T    +L S E
Sbjct: 385 GARAKAQFLAMISH-----EIRTPLNGIIGMSDVMLSGPLDPEHRGNLQT----ILASGE 435

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
             L    D   ++  +  K +      +   E    L      +         +     V
Sbjct: 436 GLLTIINDILDLSKLEAGKMEIDQLPFDLRAELQAALDLVRPLANEKGLSLSVD-----V 490

Query: 327 DKCPIPFFVYSHGNLFYA 344
              P    +   G +   
Sbjct: 491 SGLPEGRILGDPGRVRQV 508


>gi|193213739|ref|YP_001994938.1| multi-sensor hybrid histidine kinase [Chloroherpeton thalassium
           ATCC 35110]
 gi|193087216|gb|ACF12491.1| multi-sensor hybrid histidine kinase [Chloroherpeton thalassium
           ATCC 35110]
          Length = 787

 Score =  350 bits (897), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 103/421 (24%), Positives = 183/421 (43%), Gaps = 23/421 (5%)

Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465
           + E ++                     + P  ++  I+ +K    +  L S++   +D +
Sbjct: 85  DEEIAVNAMKSGAYDYLVKDPERNYLKVLPLSIEKAIHHQKSAERLRLLESVVVNGNDAV 144

Query: 466 AIINREGI-------ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
            I    G        ++  NRA +   GY +E+++ KP  V   + T       + + + 
Sbjct: 145 LIAEHTGKSSGGYPKVIYINRAFTLATGYELEEVIEKPSDVLFGEKTSQRELVKIRKAMK 204

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHA 574
            +  +++    +   K+  +    + I  +   +     +     DI+  K+ +  L  A
Sbjct: 205 GN--ESVRTELICYKKDGAVFWNDVNIVPVKDENGIYTHWVSVHRDITHRKKTEEALVKA 262

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
           K +AE+    K  FLA +SHEIRTP+ A+IG + ++              E  + I +S 
Sbjct: 263 KILAEESMRSKERFLANMSHEIRTPMNAVIGMTNLLLRTPLSS----EQAECVDIIKQSS 318

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
             +L I+ND+LD SKIESGK+     P SL   + + IS   L A+EK + +  S   + 
Sbjct: 319 ENLLVIINDILDFSKIESGKITFESIPFSLHSLLKKTISTFSLKASEKDLSLSLSLDASC 378

Query: 695 PR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN----EEVILRVRDTGVGMT 749
           P  ++ D   + QI +N++ NA+ FT  G +I++             V+  + DTG+G+ 
Sbjct: 379 PDSVMGDSVRLNQILVNLVGNALKFTEKG-KIVVKVQLDRRTPTHSVVLFSISDTGIGID 437

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             + E   + F Q  N    +  GTGLGL + K +V+   GK ++ S    G       P
Sbjct: 438 AEKQETIFESFTQAGNDTTRKFGGTGLGLAITKKLVELQGGKIWVKSELGVGATFSFALP 497

Query: 810 L 810
           L
Sbjct: 498 L 498



 Score = 48.5 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/137 (8%), Positives = 32/137 (23%), Gaps = 7/137 (5%)

Query: 94  YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN--HIGDLLKRQNTWYGKTTLWP 151
            +  I+       G    ++I     DV             I   +K   +   +   + 
Sbjct: 159 KVIYINRAFTLATGYELEEVIEKP-SDVLFGEKTSQRELVKIRKAMKGNESVRTELICYK 217

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
            +G       D+  +P+   N  ++ +    +               +           K
Sbjct: 218 KDG--AVFWNDVNIVPVKDENGIYTHW--VSVHRDITHRKKTEEALVKAKILAEESMRSK 273

Query: 212 KGHSSVEKEKYDIFSQQ 228
           +   +    +       
Sbjct: 274 ERFLANMSHEIRTPMNA 290


>gi|332702972|ref|ZP_08423060.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332553121|gb|EGJ50165.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 736

 Score =  350 bits (897), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 101/496 (20%), Positives = 189/496 (38%), Gaps = 26/496 (5%)

Query: 321 LTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
                V+  P+    +   G + Y N     +T Y +++ +  +G    L         +
Sbjct: 105 RLRGVVEAMPVMIHAHDASGAIVYWNRECERVTGYSALEMLGTSGKEDMLCRGKGCLLGD 164

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
                     +           T +        +           P          +  D
Sbjct: 165 GK------CVNFPWAELQEVEQTFRAKDGTIRNVLLTRVSGKASVP-GWAWWMTGIDITD 217

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREG-IILSTNRAVSKLFGYPVEDILRKPFT 498
            R  +R++         + ++  D I I++ +   ++  N A   LFGY  E++L  P  
Sbjct: 218 RRKTERRLAEREENYRKLFDSALDAIVIMDTQNSTVVDANPAALALFGYTREEMLGLP-- 275

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--YSL 556
                 +P        E+++               K+       I              +
Sbjct: 276 SLALTASPKRAQESFDELMAKGTLPLTRA--RQRRKDGSTFHSEISAASFESFGRKLVCV 333

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV-IKNQRF 615
              D+S     K +L +A + A + +  KS+FLA +SHEIRTP+  +IG +++ + ++R 
Sbjct: 334 FFRDVSSEVATKLRLENAVRQARRSNRVKSEFLANMSHEIRTPIAGVIGTAKMALASERR 393

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
           G        E    I+ +   +L IVND+LD+SKIE+  +    +  S +  V   +   
Sbjct: 394 GN-----QAEQLRRIENAARSLLSIVNDILDMSKIEAKGLEFRAKDFSPEWVVCACVEEF 448

Query: 676 QLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
              A  K + +      ++P  +  D   + Q+  N++ N++ FT  G  I IS      
Sbjct: 449 TALAQAKGLDLAAYVEPDVPACMRGDPDRLLQVLRNLVGNSLKFTERG-HITISVRQPEK 507

Query: 735 EE---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
            E   +   V+DTG+G+     +   KPF Q+  +   R +GTGLGL +++ +V+   G 
Sbjct: 508 GETGLLYFSVKDTGIGIPKNRQKDLFKPFSQLDTTYAKRHQGTGLGLSISRRLVERMGGD 567

Query: 792 FYIFSTPAKGTLIEII 807
            ++ S   +G+     
Sbjct: 568 IWVESERGQGSEFCFT 583



 Score = 38.9 bits (89), Expect = 3.3,   Method: Composition-based stats.
 Identities = 23/239 (9%), Positives = 61/239 (25%), Gaps = 8/239 (3%)

Query: 94  YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIE 153
            + + +       G    +M+G+    ++            +L+ +      +      +
Sbjct: 252 TVVDANPAALALFGYTREEMLGLPSLALTASPK-RAQESFDELMAKGTLPLTRARQRRKD 310

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFG--IVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
           G+  +  I  A+   + R      FR     +    R++N  R   +    K   L  + 
Sbjct: 311 GSTFHSEISAASFESFGRKLVCVFFRDVSSEVATKLRLENAVRQARRSNRVKSEFLANMS 370

Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271
               +                    + +     E  A     +  +   +   E   L  
Sbjct: 371 HEIRTPIAGVIGTAKMALASERRGNQAEQLRRIENAARSLLSIVNDILDMSKIEAKGL-- 428

Query: 272 QEDFHTINLNQYTKKQY-FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
             +F   + +               ++     L+    P + A      +   + +   
Sbjct: 429 --EFRAKDFSPEWVVCACVEEFTALAQAKGLDLAAYVEPDVPACMRGDPDRLLQVLRNL 485


>gi|320322879|gb|EFW78970.1| two-component sensor/regulator [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320329812|gb|EFW85800.1| two-component sensor/regulator [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330874310|gb|EGH08459.1| two-component sensor/regulator [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330890506|gb|EGH23167.1| two-component sensor/regulator [Pseudomonas syringae pv. mori str.
           301020]
          Length = 576

 Score =  349 bits (896), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 121/529 (22%), Positives = 211/529 (39%), Gaps = 50/529 (9%)

Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS-----TLLDAPKLSDNNAIKPVM-- 385
                HG +   N     +  Y S D ++            L+       +    P+   
Sbjct: 48  IATDEHGVIQIFNVGAERMLGYHSEDVVDKITPADISDPAELIIRAAALSHELNTPITPG 107

Query: 386 ---LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
              L       I     L  I+ +     AM        +     +    I  ++   + 
Sbjct: 108 FEALVFKASRGIEDIYELTYIRKDGSRLSAM-VSVTSLRDSAETIIGYLLIGTDNTARKQ 166

Query: 443 NK-------RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
            +       +++  +     S++E+  D + + + +GII   N+ +  L G   ++++  
Sbjct: 167 EEEAQALLDQRLRDQQFYTRSLIESNIDALMMTDPQGIISDVNKQMMALTGRTRDELIGA 226

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--C 553
           P   F     P+  +  +  +LS       E         E ++S               
Sbjct: 227 PCKNFF--TDPASADAAIKRVLSEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRKLKG 284

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
                 D++E K+ +  L       E  S  KS+FLA +SHE+RTPL A+IGFSE +K+ 
Sbjct: 285 VFAAARDVTERKRFERTLEEKNVELEHASHMKSEFLATMSHELRTPLNAVIGFSEALKDG 344

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
             G + +     Y   I  SG  +L ++ND+LD+SK+E+G M L  EPV LDE +S ++ 
Sbjct: 345 MVGDMTDA-QRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELEPVDLDELLSNSLL 403

Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-- 731
           +V+  A  +RI ++     +   +  D R  KQI  N+L+NA+ F+  GG + ++     
Sbjct: 404 IVREQAALQRIQLKLETEADFGLLELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRQVS 463

Query: 732 ---------------------TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
                                   + + L V DTG+G+   ++ K  K F QI +    +
Sbjct: 464 FAQAGVIEGDWPAHTFPLPSSEYEQFLELSVSDTGIGIAQSDMNKLFKAFSQIDSGLARK 523

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819
            EGTGLGL + K + + + G   + S    G    +  P+     P +C
Sbjct: 524 FEGTGLGLAMVKQLTELHGGCVAVASVKDLGARFVVWLPI----RPPEC 568



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/238 (11%), Positives = 64/238 (26%), Gaps = 7/238 (2%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            D  G + ++++++    G    ++IG    +         +  I  +L        + T
Sbjct: 199 TDPQGIISDVNKQMMALTGRTRDELIGAPCKNFFTDP-ASADAAIKRVLSEHKVSDYELT 257

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           +   +GT     +   A   + R+R+  G   F                +  + +  H  
Sbjct: 258 VRAYDGTETV--VSYNAATFHDRDRKLKGV--FAAARDVTERKRFERTLEEKNVELEHAS 313

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK-VSSLTEYYAHKDDVLKTEKYPLLTSEES 267
            +K    +    +              +K+  V  +T+        +      LL+    
Sbjct: 314 HMKSEFLATMSHELRTPLNAVIGFSEALKDGMVGDMTDAQRRYIGDIFNSGQHLLSLIND 373

Query: 268 SLP-EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
            L   + +   + L             +      +    R    L    D G      
Sbjct: 374 ILDLSKVEAGMMTLELEPVDLDELLSNSLLIVREQAALQRIQLKLETEADFGLLELDR 431



 Score = 45.0 bits (105), Expect = 0.055,   Method: Composition-based stats.
 Identities = 27/270 (10%), Positives = 70/270 (25%), Gaps = 36/270 (13%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGM-RLCDVSDILHI------------DPNNHIGD 135
            D HG ++  +    + +G ++  ++      D+SD   +             P     +
Sbjct: 50  TDEHGVIQIFNVGAERMLGYHSEDVVDKITPADISDPAELIIRAAALSHELNTPITPGFE 109

Query: 136 LL----KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN 191
            L     R      + T    +G+   +   ++   +        G+   G    N    
Sbjct: 110 ALVFKASRGIEDIYELTYIRKDGS--RLSAMVSVTSLRDSAETIIGYLLIGT--DNTARK 165

Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL------------RMKNK 239
                   LD++   L + +    S+ +   D      P   +            R +++
Sbjct: 166 QEEEAQALLDQR---LRDQQFYTRSLIESNIDALMMTDPQGIISDVNKQMMALTGRTRDE 222

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
           +          D          + SE      +      +  +        T  +  ++ 
Sbjct: 223 LIGAPCKNFFTDPASADAAIKRVLSEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRKL 282

Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
               +     +    F+         ++  
Sbjct: 283 KGVFAAARDVTERKRFERTLEEKNVELEHA 312


>gi|167040619|ref|YP_001663604.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter sp. X514]
 gi|300914660|ref|ZP_07131976.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter sp. X561]
 gi|307724106|ref|YP_003903857.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter sp. X513]
 gi|166854859|gb|ABY93268.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter sp. X514]
 gi|300889595|gb|EFK84741.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter sp. X561]
 gi|307581167|gb|ADN54566.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter sp. X513]
          Length = 456

 Score =  349 bits (896), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 85/370 (22%), Positives = 174/370 (47%), Gaps = 24/370 (6%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +    ++     +L +IL++  +G+   +    IL  N A  K+     +D++ +     
Sbjct: 101 KETIEELNDRNAKLEAILKSIVNGVIAFDNNEKILLINDAARKILNIKEKDLIGRHILEI 160

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-CYSLTMH 559
           +     S ++ +  ++       +         K  K+ +   I+  +   +  + L + 
Sbjct: 161 VR---NSKLHDFFEDVKKNKNSPSKSLELNVFNKHLKVYT-SPILHPISHQNLGFVLIID 216

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           DI+E ++ +                +S+F+A VSHE+RTPLT+I GF E +   R G + 
Sbjct: 217 DITEMRRLE--------------KIRSEFVANVSHELRTPLTSIRGFIETL---RNGAID 259

Query: 620 NPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
           NP+  + + + ID     +  ++ND+L +S+IE+ K     E + LD  + + + ++   
Sbjct: 260 NPQARDKFLDIIDFESERLTRLINDILTLSEIENVKEGYPKEEIELDNEIEDILYIMDKV 319

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738
           A  K I ++         I  +     Q+ +N++ N I +TP GG + +ST     +++I
Sbjct: 320 ARNKNITLKKDLNCTDLVIKTNKDRFHQMMINLIDNGIKYTPEGGFVKVSTR-EEGDKII 378

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           + V D G+G++   + +  + F ++  S+  +  GTGLGL + K +V++  G+ ++ S  
Sbjct: 379 ITVEDNGIGISKENIPRLFERFYRVDKSRSRKLGGTGLGLAIVKHIVESMKGEIFVESEV 438

Query: 799 AKGTLIEIIF 808
            +GT   I F
Sbjct: 439 GRGTKFIIKF 448


>gi|87118404|ref|ZP_01074303.1| probable sensor/response regulator hybrid [Marinomonas sp. MED121]
 gi|86166038|gb|EAQ67304.1| probable sensor/response regulator hybrid [Marinomonas sp. MED121]
          Length = 1317

 Score =  349 bits (896), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 131/668 (19%), Positives = 239/668 (35%), Gaps = 57/668 (8%)

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP--PHLRMKNKVSSLT 244
               +  R + ++  K  S L  + +   S++ E   I    +         +  +    
Sbjct: 341 VTSLSRRRQVVRQSIKLDSILSSVNEAIISLDTEDCIISWNPAAALLFGYSEEEALGRFF 400

Query: 245 EYYAHKDD--VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN----NSKE 298
                 DD           ++  +S             +  +   +   + +    +   
Sbjct: 401 PGLVLPDDKWAEYDMGKDFISKGQSYNILDTQRRHKEGHLLSLGLHVTPMLDKNKRSMGV 460

Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVD----------KCPIPFF---------VYSHG 339
           +   +   +                E V                               G
Sbjct: 461 TIAAVDISHVKRTEKALQRSNEELEEVVKLRTEQMKSVLNLQSGILNSTAFAVIATDLEG 520

Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK----------------P 383
            + + NP+   L ++   D I       +L  A +L D                      
Sbjct: 521 LVTFINPATKYLFQFNEADVIAKP---DSLFFADELGDAYPPLYQQGSQLARYMKRTLIE 577

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
             L   +R  +    +         +  A +       N   E+M    I  +    +  
Sbjct: 578 QELIDRNRQQVNHEDQERIFIRKDLSRFAGSLSVSLIHNDQGESMGYLAIVTDLTRQKYL 637

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
           + + ++E +      E+TSD +  ++  G ++  N+A     G   + +L +        
Sbjct: 638 EFEWQLEKVS----TESTSDAVLWMDDVGAMIKVNQAACDALGVKSQVLLGRKLFDIFPD 693

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
           ++ S    Y  E+         +        EE  +S+   +  L       L   DI++
Sbjct: 694 HSYSWWRPYQIELQQYKKVW-FDTSFHNVHGEEVHVSVNANLIYLDGKEYVHLVARDIND 752

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             +++++L+ AK+ A+  S  KS FLA +SHE+RTP+ A+IG  E++K     P+     
Sbjct: 753 RLKKEHELATAKERADIASEAKSHFLANMSHELRTPMNAVIGLLELVKKTSLSPV----Q 808

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            ++ +    + + +L I+ND+LD SKIE+  M +      L   + E   ++      K 
Sbjct: 809 SDFIDKTQVAAHSLLKILNDILDFSKIEANSMLVEKHEFQLSSLIDEMALILSASLTTKD 868

Query: 684 ILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           I +     +N+P  I  D   +KQI LN+ SNAI FT  G  ++IS    S  E+ + V 
Sbjct: 869 IEVLFDIDDNLPETIQTDALKLKQILLNLGSNAIKFTQKG-HVLISIKMLSENEISMCVE 927

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D+G+GM   +LE     F Q   S   R  GTGLGL + K +++   G   + S   KGT
Sbjct: 928 DSGIGMNPEQLEHIFTDFKQAEASINRRFGGTGLGLAITKKLIELMDGSIRVESHLGKGT 987

Query: 803 LIEIIFPL 810
              +  PL
Sbjct: 988 SFHVQLPL 995



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/245 (15%), Positives = 87/245 (35%), Gaps = 9/245 (3%)

Query: 348 FLLLTKYKSVDDIEIAGGLS-TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
            L LT+ +    I     L   +     ++  +        +                 +
Sbjct: 253 ALDLTQNELALTIRDVSNLDNQIFFQQDVTQRSEYHANTNLKFYNRHWVIELTASKQFID 312

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
               + +      +   F   +    +    V +   +R++  + ++L SIL + ++ I 
Sbjct: 313 D---MHLVDERSIQRTVFAGALLLAALAFFLVTSLSRRRQVVRQSIKLDSILSSVNEAII 369

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
            ++ E  I+S N A + LFGY  E+ L + F   +  +          + +S      + 
Sbjct: 370 SLDTEDCIISWNPAAALLFGYSEEEALGRFFPGLVLPDDKWAEYDMGKDFISKGQSYNI- 428

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKES 582
             T    KE  LLSL + +  +   +      ++   DIS  K+ +  L  + +  E+  
Sbjct: 429 LDTQRRHKEGHLLSLGLHVTPMLDKNKRSMGVTIAAVDISHVKRTEKALQRSNEELEEVV 488

Query: 583 SHKSD 587
             +++
Sbjct: 489 KLRTE 493



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 38/420 (9%), Positives = 99/420 (23%), Gaps = 55/420 (13%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI-DPNNHIGDLLKRQNTWYGK- 146
           +D    +   +       G    + +G     +          +   D + +  ++    
Sbjct: 371 LDTEDCIISWNPAAALLFGYSEEEALGRFFPGLVLPDDKWAEYDMGKDFISKGQSYNILD 430

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGF--RGFGIVHVNRVDNDPRALGKRLDKKF 204
           T     EG    + + L   P+  +N+   G       I HV R +   +   + L++  
Sbjct: 431 TQRRHKEGHL--LSLGLHVTPMLDKNKRSMGVTIAAVDISHVKRTEKALQRSNEELEEVV 488

Query: 205 SHLHEIKKGHS------------------------SVEKEKYDIFSQQSPPPHLRM---- 236
               E  K                            +      +F         +     
Sbjct: 489 KLRTEQMKSVLNLQSGILNSTAFAVIATDLEGLVTFINPATKYLFQFNEADVIAKPDSLF 548

Query: 237 -KNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE---------DFHTINLNQYTKK 286
             +++         +   L       L  +E     ++          F   +L+++   
Sbjct: 549 FADELGDAYPPLYQQGSQLARYMKRTLIEQELIDRNRQQVNHEDQERIFIRKDLSRFAGS 608

Query: 287 QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYAN 345
                + N+  ES  YL+     +   Y +    L   + +       ++   G +   N
Sbjct: 609 LSVSLIHNDQGESMGYLAIVTDLTRQKYLEFEWQLEKVSTESTSDAVLWMDDVGAMIKVN 668

Query: 346 PSFLLLTKYKSVDDIEIA---------GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA 396
            +       KS   +                                   +      +  
Sbjct: 669 QAACDALGVKSQVLLGRKLFDIFPDHSYSWWRPYQIELQQYKKVWFDTSFHNVHGEEVHV 728

Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
           S   + I  + +  + +         +    +       +      +   +     +L +
Sbjct: 729 SVNANLIYLDGKEYVHLVARDINDRLKKEHELATAKERADIASEAKSHF-LANMSHELRT 787


>gi|154687042|ref|YP_001422203.1| PhoR [Bacillus amyloliquefaciens FZB42]
 gi|154352893|gb|ABS74972.1| PhoR [Bacillus amyloliquefaciens FZB42]
          Length = 579

 Score =  349 bits (896), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 87/392 (22%), Positives = 172/392 (43%), Gaps = 30/392 (7%)

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
                     N +  + ++    +   +++  +L +++E    G+ +I+  G I   NR+
Sbjct: 208 RRSDRLGRAMNSLAVDLMEMTRTQ---DMQRDRLLTVIENIGSGLILIDGRGFINLVNRS 264

Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL---TEILSLDLRQTLEKITLGSTKEEK 537
            +K F    E +LR+ +    E      +   +          LR  +         +  
Sbjct: 265 YTKQFHTKPERLLRRLYHDAFEHEEIIRLVEDIFMTETKKCQLLRLPINIERRYFEVDGV 324

Query: 538 LLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
            +     +          L  HD++E K+ +                + DF+A VSHE++
Sbjct: 325 PI-----MGPDDEWKGIVLVFHDMTEIKKLE--------------QMRKDFVANVSHELK 365

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           TP+T+I GF+E + +   G + + + + ++ + I +    +  +V DLLD+SK+E     
Sbjct: 366 TPITSIKGFTETLLD---GAMKDEKALSDFLSIILKESERLQSLVQDLLDLSKMEQQNFT 422

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716
           +  E     + + E  +L++  A EK I  +         +  D   +KQ+ LN+ +NA+
Sbjct: 423 MRVESFDAAKILHEIEALLRHKAEEKGISFQLDLPEEPIFVTGDAHRLKQVFLNLANNAL 482

Query: 717 HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
            +TP  G + IS        V ++V DTG+G+   E+ +  + F ++   +     GTGL
Sbjct: 483 TYTPEKGTVGISVHVKET-VVDIKVSDTGIGIQKEEIPRIFERFYRVDKDRSRNSGGTGL 541

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           GL + K +++A+ GK  + S P +GT+  +  
Sbjct: 542 GLAIVKHLIEAHEGKIEVTSEPGQGTVFTVTL 573


>gi|212637309|ref|YP_002313834.1| RscS [Shewanella piezotolerans WP3]
 gi|212558793|gb|ACJ31247.1| RscS [Shewanella piezotolerans WP3]
          Length = 934

 Score =  349 bits (896), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 107/552 (19%), Positives = 196/552 (35%), Gaps = 21/552 (3%)

Query: 272 QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI 331
             +   I     +  Q        S      ++            E    T   + +   
Sbjct: 89  PNNLSVIARALLSDPQIVLNANRLSASVASLVADLETILRLKISQEYSKHTINLLQQELW 148

Query: 332 PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK----PVMLY 387
                S   L     +  L    +   ++  +    +L    ++              + 
Sbjct: 149 QEMPNSDDRLHMIGQTMELAMSTQVSPELASSNSFKSLRIHSQILARIKQDISSKTQQVL 208

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR-- 445
            +             +        ++          F         E    + RI +   
Sbjct: 209 NAKVREDINEQEFFWLSVVEGTKQSLLVSCMLLVVIFSLYYRVQVQEQSRKERRILESLV 268

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK-PFTVFLEQN 504
             E E   L  + E   DG  I +++G +   N+  + + GY + D+  K P ++   Q 
Sbjct: 269 ASEQEKEMLALVAEHAQDGFIITDKQGFVTWLNKGFTTISGYTLADLEGKKPGSILQGQE 328

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHD 560
           T       ++  +       +    +   K+     + + I  +  S      +     D
Sbjct: 329 TEKGDVDKISRAIKAGKS--IASEVVNYHKDGTPYWVDMTISAVTDSDGDISNFIAVERD 386

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
            +  KQ ++ L+ A   A+  +  KS FLA +SHE+RTPL  I+G +++I+      L N
Sbjct: 387 TTARKQMQDDLAKAVIKADISNKAKSTFLATMSHELRTPLNGILGMAQIIE----PNLDN 442

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
           P + +    +  SGN +  ++ND+LD SK+E GK+ L  E    +  +       +   +
Sbjct: 443 PEHRKQIQILLESGNHLTSLLNDILDFSKVEQGKLELESELFRFNSVLEPISKTYEPICD 502

Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIII---STTHTSNEE 736
           EK I +      +  +    D   ++Q+  N+LSNA+ FT  G   ++          + 
Sbjct: 503 EKNIQLIVQNEIDEKQCFKGDKSRIRQVIYNLLSNAVKFTEQGSVSLLFKQGVNAEGQQG 562

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           +   + DTG+G+    L     PF Q  +S   +  GTGLGL + K +V+   G   I S
Sbjct: 563 IEATIIDTGIGIRPERLASIFDPFVQAESSTTRQYGGTGLGLSIVKQLVELMGGTISITS 622

Query: 797 TPAKGTLIEIIF 808
              KGT   I  
Sbjct: 623 QVDKGTRFAIFL 634


>gi|144273|gb|AAA23052.1| non-motile and phage-resistance protein [Caulobacter crescentus
           CB15]
          Length = 842

 Score =  349 bits (896), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 143/718 (19%), Positives = 265/718 (36%), Gaps = 52/718 (7%)

Query: 130 NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRV 189
           +              G+T      G    + +  A      R R F    G     V   
Sbjct: 136 DGADWKAAALAAGASGRTNWVGSVGETGRLYV--ATTTSLDRARAFVIASGDASRLVADP 193

Query: 190 DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH 249
           +          D K           +   +E + +  +        ++ + +        
Sbjct: 194 EKGESGALALPDGKLIAARGRGVQGAGALREAFALSIEDLGDGPAAVRGQAADGALLDVA 253

Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
              V +     +  +   S+   +                G            +  R   
Sbjct: 254 VRPVAQGALLAVAAAPTRSVANLDRQVMEGAFSLLVPLGVGIALALLL----MIQSRKAE 309

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
                F + E      V+      + +  +G+  Y +     +  +     +     L  
Sbjct: 310 VAHREFIDSERRFRLAVEAARCGIWEWDLNGDQVYLSDVTGAMFGWGGGGVVSGQDLLER 369

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
           +    +      ++  +   +       S R+   +    +                 + 
Sbjct: 370 ISIDHR----ERVRQALANAAMYGAFDVSFRVPASEQGARSLWIDARGQGFGKPGSEGHA 425

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
              G+  +  + RI + + +    +L   +E+ S+   + +R+G +L  NR    +F   
Sbjct: 426 RIIGVALDVTEERIAQARAQAAENRLRDAIESVSEAFVLWDRQGRLLMCNRNYRSVFSLE 485

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            + +  KP     E N  + +            +   E   +    + + + +    ++ 
Sbjct: 486 PKIL--KPGAARAEVNRFAALAIKQDHPAPDGAKGVREAEMM----DGRWIQIS---ERR 536

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKI----------------------------AEK 580
                  +T  DI+  K ++      ++                             AE 
Sbjct: 537 TAEGGLVMTAADITAIKTQEEARRRNEEQLQNAVAGLERSQEQLAELARKYETEKVKAES 596

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            +  KS+FLA +SHE+RTPL AI GFSE++ N+ FGPLG+ RY  Y+  I  SG  +L +
Sbjct: 597 ANKAKSEFLANMSHELRTPLNAINGFSEIMMNEMFGPLGDQRYKGYSQDIHSSGQHLLAL 656

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILAD 700
           +ND+LD+SKIE+GKMNL FE + L++   +A+ LV+  A    + +   F   +P I AD
Sbjct: 657 INDILDMSKIEAGKMNLKFESMHLEDVAEDAVRLVRNRAEAAGLKLDIDF-PQLPEIEAD 715

Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN---EEVILRVRDTGVGMTNYELEKAM 757
            R+VKQ+ LN+LSNAI FTP  G + +      +   + + + V DTG+G+   +L +  
Sbjct: 716 YRAVKQVLLNLLSNAIKFTPRAGSVTVRVEVRRDPFGDLIKVSVTDTGIGIAKEDLARLA 775

Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
           KPF Q+ +      +GTGLGL L K+++  + G   + STP +GT +    P+  +  
Sbjct: 776 KPFEQVESQFSKTTQGTGLGLALTKSLITMHDGVLEMHSTPGEGTTVSFTLPVRHSDQ 833


>gi|73670466|ref|YP_306481.1| two component system histidine kinase [Methanosarcina barkeri str.
           Fusaro]
 gi|72397628|gb|AAZ71901.1| two component system histidine kinase [Methanosarcina barkeri str.
           Fusaro]
          Length = 729

 Score =  349 bits (896), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 103/407 (25%), Positives = 196/407 (48%), Gaps = 16/407 (3%)

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
                 +          I     +  + +++++ +  +   +L++ ++ +  +N +  I+
Sbjct: 322 RRLPLKDDDELYRLSKEINGMLNEIDLAQQELKAQEREKKVLLDSLNELVIFVNPQLYII 381

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
             N+A  +     ++  +       L+ + P   +  L ++     +++ E     S K+
Sbjct: 382 WANKAALEFMKIDLQKAVGLRLNDTLDISIPLSYSLDLEQVFMTGNKKSGEF----SGKD 437

Query: 536 EKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
           +++  ++ I                 DI+E K  +  L   K+IAE  +  KS+FLA +S
Sbjct: 438 DRVWIVQAIPVTEEGGKIIGVLEMCRDITESKAAET-LLQEKQIAEAANRTKSEFLANMS 496

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HE+RTPL +IIGF++++  Q +G L N R ++    I +SG  +L+++N +LD+SKIE+G
Sbjct: 497 HELRTPLNSIIGFADLLYEQVYGEL-NERQLKSVGNISKSGKHLLNLINGILDLSKIEAG 555

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713
           KM L ++   L   ++   +L+   A+ K + I  S  +++  I AD     QI  N++ 
Sbjct: 556 KMELSYKQFELASKLNIIKNLLSPIADRKNVQIEISIDSSLSSIYADEARFVQIMYNLVD 615

Query: 714 NAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
           NAI F+   G + I       + V + V DTG+G+   +  K  KPF Q+ +    + +G
Sbjct: 616 NAIKFSYENGLVKIE-ARKKGDLVEITVTDTGIGIKPEDQSKLFKPFSQVDSFLSKQFQG 674

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820
           TGLGL L K +V  + G  +  S P +G+    + P+       +CI
Sbjct: 675 TGLGLSLVKQIVQLHGGDIWFRSKPGEGSTFAFVIPI-------ECI 714


>gi|254479591|ref|ZP_05092901.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Carboxydibrachium pacificum DSM 12653]
 gi|214034465|gb|EEB75229.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Carboxydibrachium pacificum DSM 12653]
          Length = 571

 Score =  349 bits (896), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 88/370 (23%), Positives = 164/370 (44%), Gaps = 41/370 (11%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +     ++ E  ++ +I++   DG+   + +G I+  N A  K+    +   L  P    
Sbjct: 237 KETLNDIQGEKNKIEAIIKFMKDGVVAADAKGNIIHYNEAAEKMLNKKLS--LGMPVEEV 294

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMH 559
           L                               T + ++L +     K+      Y   MH
Sbjct: 295 LPLKEAENPIPM--------------------TCDNRVLMINAASVKINNQVEGYVYVMH 334

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           DI+E  +                  + +F+A VSHE+RTPL  I  + E +    +  + 
Sbjct: 335 DITEQHKL--------------DQMRKEFVANVSHELRTPLATIKSYVETLL---YNDVD 377

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
                ++   I+   + +  +V DLL +SK++S + +L  EP   +E V   ++ + + A
Sbjct: 378 TEYSKKFLRIIETETDRMTRLVKDLLLLSKMDSEENSLKLEPCDFNEIVKNVVNSLSIEA 437

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
            +K   +  + +  + ++  D   V+Q+A+NI++NAI +TP GG I IST +     V  
Sbjct: 438 TKKGHNVILNLSETLQKVNVDKDKVEQMAMNIINNAIKYTPEGGVIEISTAYDEEG-VTF 496

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V+D G+G+   +L +  + F ++  ++     GTGLGL + K +V+ + GK  I S   
Sbjct: 497 TVKDNGIGIPKEDLPRIFERFYRVDKARSRELGGTGLGLSIVKQIVELHKGKVKIESELG 556

Query: 800 KGTLIEIIFP 809
           KGT++ +  P
Sbjct: 557 KGTVVTVQLP 566


>gi|66046171|ref|YP_236012.1| PAS [Pseudomonas syringae pv. syringae B728a]
 gi|63256878|gb|AAY37974.1| PAS [Pseudomonas syringae pv. syringae B728a]
          Length = 1353

 Score =  349 bits (896), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 113/611 (18%), Positives = 209/611 (34%), Gaps = 44/611 (7%)

Query: 238 NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297
            ++   T    H  +VL+T  +           E                    +     
Sbjct: 261 RQLIYQTPENDHDQEVLQTYAFEREIYGRVWRMEVGAHPAFIAALDPVPAGRVFIIGTLV 320

Query: 298 ESFEYLSHRNHPSLSAYFDE---GENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTK 353
                +             +   G+      V+            G +   N +   +  
Sbjct: 321 SLMLTVLVGTLLLSRQRKQQVVAGQARLATIVENSSDAIIGEALDGRIITWNRAAEQMFG 380

Query: 354 YKSVDDIEIAGGL-----------STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT 402
           Y   + +                   LL+     +            +   I  +     
Sbjct: 381 YDEHEVLGRPLAPLLVPPELVHEDEQLLERVARGERGPTLETRRLHKNGQLIDVTITCSF 440

Query: 403 IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK-RKMEIEVMQLCSILEAT 461
           I+      L    +  +  ++            +       +  ++      L  +L+A+
Sbjct: 441 IRETDGTLLGAAKMMHDITDRKRVERYLMEFNAQLEQQVSERTAELSRVAGLLQGVLDAS 500

Query: 462 SD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520
           S+  I   + +G I   NR    L GY   ++L                           
Sbjct: 501 SEVSIIATDTQGQIFVFNRGAELLLGYSNSEMLSGNGPGVFHLPEEVAARSAELSREYGT 560

Query: 521 LRQTLE-------------KITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISE 563
           L + ++             +      K+   + + +II  +  +      +     DI+E
Sbjct: 561 LIEGIDVFCYKASREGSETRQWTYVRKDGTTVPVLMIITPIRTADGELIGHLGIAQDITE 620

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
                 +L  AK  AE  ++ KS FLA +SHEIRTP+ A+IG S ++ N       N + 
Sbjct: 621 RLHHSAELHAAKSSAEAANAAKSLFLANMSHEIRTPMNAVIGISHLLHNTAL----NDQQ 676

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            +    +  +G  +L I+ND+LDI+KIE+G+M L   P S  + + E   L    A EK 
Sbjct: 677 RQLLTKLQIAGRTLLGIINDILDIAKIEAGEMRLEHNPFSPRQLLDELGELFTPQAQEKG 736

Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VI 738
           +    +   ++P +++ D   V QI +N++ NA+ FT  GG + ++ +   +      + 
Sbjct: 737 LRFSVNVVASLPGQLIGDALRVNQILMNLVGNALKFTSVGG-VDVTVSREDDHADTCCLR 795

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
             V+DTG G+    L +   PF Q   S   R  GTGLGL + + + +   G+  + S  
Sbjct: 796 FSVQDTGCGIPGDVLGQLFSPFTQADASTTRRFGGTGLGLSVVRGLAEQMGGRIGVESEL 855

Query: 799 AKGTLIEIIFP 809
             G+   +  P
Sbjct: 856 GTGSEFWVELP 866



 Score =  117 bits (294), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 67/436 (15%), Positives = 135/436 (30%), Gaps = 48/436 (11%)

Query: 169 YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228
            +  +E+ G RGFG +      ++   + +  +             S     + D F  Q
Sbjct: 92  RNIEKEYPGARGFGFIRRVAASDEAEFVRRVREDG--RPDFSLSRLSGPGTRQGDRFIIQ 149

Query: 229 SPPPHLRMKNKVSSLTEYYAHKDDVLK---TEKYPLLTSEESSLPEQEDFHTINLNQYTK 285
              P  R    +        H+ D            L++  + L + +D     L     
Sbjct: 150 FIDPLDRNVQALGLDITSEEHRRDAALQAMRSGAATLSAPITLLQDNDDHMRAFLFLLPV 209

Query: 286 KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYAN 345
                   + ++     +     P          +     +              L+  N
Sbjct: 210 YSTPEIPTDIAQRETSLIGWTYAPLAMREVMSNLDPLNHRLHL-----------KLYDVN 258

Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405
               L+ +    D                  D   ++     R          R+  ++ 
Sbjct: 259 EGRQLIYQTPEND-----------------HDQEVLQTYAFER------EIYGRVWRMEV 295

Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE----VMQLCSILEAT 461
               +      P      F      + +    V T +  R+ + +      +L +I+E +
Sbjct: 296 GAHPAFIAALDPVPAGRVFIIGTLVSLMLTVLVGTLLLSRQRKQQVVAGQARLATIVENS 355

Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
           SD I     +G I++ NRA  ++FGY   ++L +P    L        +  L E ++   
Sbjct: 356 SDAIIGEALDGRIITWNRAAEQMFGYDEHEVLGRPLAPLLVPPELVHEDEQLLERVARGE 415

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKI 577
           R      T    K  +L+ + I    +  +    L     MHDI++ K+ +  L      
Sbjct: 416 RGP-TLETRRLHKNGQLIDVTITCSFIRETDGTLLGAAKMMHDITDRKRVERYLMEFNAQ 474

Query: 578 AEKESSHKSDFLARVS 593
            E++ S ++  L+RV+
Sbjct: 475 LEQQVSERTAELSRVA 490



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/363 (8%), Positives = 90/363 (24%), Gaps = 32/363 (8%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNTWYGKTTL 149
            G +   +    +  G    +++G  L  +     +   +   +  + + +     +T  
Sbjct: 365 DGRIITWNRAAEQMFGYDEHEVLGRPLAPLLVPPELVHEDEQLLERVARGERGPTLETRR 424

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR---------- 199
               G    + + +    I   +    G     ++H                        
Sbjct: 425 LHKNG--QLIDVTITCSFIRETDGTLLGAAK--MMHDITDRKRVERYLMEFNAQLEQQVS 480

Query: 200 ------------LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247
                       L        E+    +  + + +                 +S      
Sbjct: 481 ERTAELSRVAGLLQGVLDASSEVSIIATDTQGQIFVFNRGAELLLGYSNSEMLSGNGPGV 540

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
            H  + +      L     + +   + F      + ++ + +  ++ +       +    
Sbjct: 541 FHLPEEVAARSAELSREYGTLIEGIDVFCYKASREGSETRQWTYVRKDGTTVPVLMIITP 600

Query: 308 HPSLSAYFDEGENLTPETVDKC-PIPFFVYSHGNLFYANPS---FLLLTKYKSVDDIEIA 363
             +          +  +  ++         +  +   AN +   FL    ++    +   
Sbjct: 601 IRTADGELIGHLGIAQDITERLHHSAELHAAKSSAEAANAAKSLFLANMSHEIRTPMNAV 660

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
            G+S LL    L+D        L  + RT +     +  I       + +   PF     
Sbjct: 661 IGISHLLHNTALNDQQRQLLTKLQIAGRTLLGIINDILDIAKIEAGEMRLEHNPFSPRQL 720

Query: 424 FPE 426
             E
Sbjct: 721 LDE 723


>gi|308275109|emb|CBX31708.1| hypothetical protein N47_E52200 [uncultured Desulfobacterium sp.]
          Length = 1266

 Score =  349 bits (896), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 105/385 (27%), Positives = 182/385 (47%), Gaps = 17/385 (4%)

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
           E  + +  +   +   ++   +   T   + ++  +GI+LS N A  +  G    DI+ K
Sbjct: 366 ELNERKRLENIQKESELKFKVLYNHTFQLMGLMAPDGIMLSVNEAALESTGTKESDIVEK 425

Query: 496 PFTVFLEQNTPSVMNHYLTE-ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC- 553
            F      +    +   + + ++     Q +   T    K   L  +   IK +   S  
Sbjct: 426 LFWDAPWFSYSEEVKEMVRDSVIKAAAGQFIRFETQIHLKNNILQDIDYSIKPVEDESGN 485

Query: 554 ---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
                    DI+  K+ + +L  AK+ AE  +  K +FLA +SHEIRTP+  II  SE++
Sbjct: 486 AIMLIAEGRDITNMKRLEKELIKAKEKAEVATGAKDEFLANMSHEIRTPMNGIIAASELL 545

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
            N+      + +   Y   I  S   +L+I+ND+LD+SKIE+GK++L      +++ + +
Sbjct: 546 SNEDI----SDKAKHYLRIITTSAYSLLEIINDILDVSKIEAGKLDLEIRDFKIEDVIDK 601

Query: 671 AISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
            +++     ++K I +       IPR +  D   + QI +N++SNA+ FT  GG II+  
Sbjct: 602 LVNMFFHRTSKKFIELLVDIDPEIPRALRGDELRLYQILVNLVSNAVKFTKKGGIIIVGV 661

Query: 730 -----THTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
                    + EV LR  ++DTG+G+ +  +EK  +PF Q   S      GTGLGL + K
Sbjct: 662 KELENRSAESGEVKLRFFIKDTGIGIAHENIEKIFEPFSQADASTTRNYGGTGLGLCICK 721

Query: 783 AMVDANMGKFYIFSTPAKGTLIEII 807
            +V+   G+  + S P KG+     
Sbjct: 722 QLVEMMGGEIRVESEPEKGSTFSFT 746


>gi|299133557|ref|ZP_07026751.1| multi-sensor signal transduction histidine kinase [Afipia sp.
           1NLS2]
 gi|298591393|gb|EFI51594.1| multi-sensor signal transduction histidine kinase [Afipia sp.
           1NLS2]
          Length = 812

 Score =  349 bits (896), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 127/645 (19%), Positives = 241/645 (37%), Gaps = 52/645 (8%)

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
                  ++          +D  +             V  L           +       
Sbjct: 127 GLDRQEGVQLALDGSNDAAFDAVTPAQVQALNDTGEAVIELPLPDGRMALAAQRTLDTAS 186

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
            S      +       +                      +             D      
Sbjct: 187 GSVIVMQAQNAASWRSDTALQITLSATTGFVVLILGFAFHWQSTRARESDLINDAVRGRI 246

Query: 323 PETVDKCPIPFFVYSH--GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
              +++     + +    G + + + S   +   +S +D+   G ++ L+ +  +     
Sbjct: 247 DTALNRGRCGLWDWDLSRGRI-FWSQSMFTMLGLESRNDLLAFGEVNALVHSEDIDLMAI 305

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
              ++             +   ++    + + +                  GI  +  + 
Sbjct: 306 ADQLL----SGQISHID-QTFRMRHADGHWIWLCVRCELTEAGSNGGCHLIGIALDITEQ 360

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTV 499
           +    +     ++L   +E   +   + + E  ++  N    +L   P   +    P+  
Sbjct: 361 KSLAARSVEADLRLRDAIETIPEAFVLWDSENRLVLCNSHFQRLHKLPDSAVTAGTPYET 420

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH 559
            +E      +      +   ++     +       +   L++    ++      +     
Sbjct: 421 VIEVGHMPEIRA---RVADTEISAPGSRTFEAQLNDGSWLNIS---ERRTKDGGFVSVGT 474

Query: 560 DISEWKQEKNKLSHA-----------------------------------KKIAEKESSH 584
           DI++ K+ + +L                                      K+ AE+ +  
Sbjct: 475 DITQIKRHEQRLVDNDLRLTAYVVDLKRSQAALEQQARELADLAQKYAEEKRRAEEANQT 534

Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
           KS FLA +SHE+RTPL AIIGFSEV+    FGPLG+ RY EY   I  SGN +LD++ND+
Sbjct: 535 KSKFLANMSHELRTPLNAIIGFSEVMGRGMFGPLGSGRYQEYCQDILTSGNYLLDVINDV 594

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704
           LD+SKIE+G+M L  E + L E VSE+  +   +A+ KR+ + +     IP I+AD R++
Sbjct: 595 LDMSKIEAGRMKLDPEKLDLAETVSESTRVASSWADGKRLTLDSRIDGAIP-IVADRRAM 653

Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764
           KQI +N+LSNA+ FTP GG+I++ +     + V++ + DTG+G+    L +   PF Q+ 
Sbjct: 654 KQILVNLLSNAVKFTPDGGRIVVRSRII-GDRVMVTIADTGIGIPKEALARLGCPFEQVE 712

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +       G+GLGL +AK++V  + G   + S    GT++ I  P
Sbjct: 713 SQLTKSYHGSGLGLAIAKSLVQLHSGSMKLRSQLHIGTVVRINLP 757


>gi|302337068|ref|YP_003802274.1| multi-sensor signal transduction histidine kinase [Spirochaeta
           smaragdinae DSM 11293]
 gi|301634253|gb|ADK79680.1| multi-sensor signal transduction histidine kinase [Spirochaeta
           smaragdinae DSM 11293]
          Length = 1052

 Score =  349 bits (896), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 124/636 (19%), Positives = 230/636 (36%), Gaps = 37/636 (5%)

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK-NKVSSLTEY 246
           R+    R     L +    + E        ++E    ++  +          +    T  
Sbjct: 337 RLSKTIRQKTLSLIEFKRAVREAGHAIYMTDREGIITYTNPAFERITGYSWEEAEGKTPN 396

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDF--HTINLNQYTKKQYFGTLQNNSKESFEYLS 304
             +   + ++    L  S  +    +E+      +   Y   Q    + ++      +++
Sbjct: 397 ILNSGMMPESYFARLWESILAGELWEEEIINRKQDGTIYYAHQTIAPIFSDFGMVISFVA 456

Query: 305 HRNH----PSLSAYFDEGENLTPETVDKCPIPFFVYSHGN--LFYANPSFLLLTKYKSVD 358
            +N             E E L     +       + +     +   N + +    Y   D
Sbjct: 457 IQNDVTQQRESERRLWESETLYRNLFETAADSILLINPETLGISECNQATIESLGYG-KD 515

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
           +I+    L   +  P            +   D+          T +    N         
Sbjct: 516 EIKQLSYLD--IQPPDHQQRVKELVQGISEFDQATFDTQHTTKTGELREVNVHMTLLN-- 571

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
                  +      I  +  + R  +R ++    +   + E +SD I+     GI L  +
Sbjct: 572 -----LDQRKLLLAIMHDVTERRQAERTIQQSERKYRMLAENSSDMISQHAPGGIYLYVS 626

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
            A  +L GY  E++L +     +       +       L     +    +     K+   
Sbjct: 627 PACIRLLGYEQEELLGRQVEEIIHPEDIERVIEIGKNHLGSPSERITTLVYRIQKKDGSY 686

Query: 539 LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
                   +   S        DISE    +  L       E+ +  KS FLA +SHEIRT
Sbjct: 687 TWFE-THSRRTDSQEIIAISRDISERIAMERGL-------EEANKAKSMFLANMSHEIRT 738

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
           PL A++GF+++I         +P+  EYA  ID SG  +L ++ D+LD SK+E+G +  +
Sbjct: 739 PLNAVLGFNDLIARN----TSDPKLKEYAAQIDLSGKNLLTLIGDILDFSKVEAGGVQFN 794

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIH 717
           ++  S    V E I+L ++ A ++ I + T     IP +I  D   V+QI +N++SNA+ 
Sbjct: 795 YDFFSPHHLVREIIALFEMEAKKRGIDLITKERTPIPKQIKLDEDRVRQILINLVSNALK 854

Query: 718 FTPSGGQ-IIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           FT  G   + I   +   ++    +   V DTG+G+   E     + F Q       +  
Sbjct: 855 FTEKGSVCLEIHAAYIKQKDQRCNLTFSVIDTGIGIPEKEQHVIFEAFRQQEGQSTRKYG 914

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           GTGLGL ++K + +   G   + S    G+   + F
Sbjct: 915 GTGLGLAISKNLAEGMEGSIDVKSNVGSGSTFTLSF 950



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 39/387 (10%), Positives = 99/387 (25%), Gaps = 26/387 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWY 144
            +  D  G +   +    +  G    +  G     ++  +  +     + + +     W 
Sbjct: 363 IYMTDREGIITYTNPAFERITGYSWEEAEGKTPNILNSGMMPESYFARLWESILAGELWE 422

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            +      +GT  Y    +A  PI+S       F    I +      +        +  +
Sbjct: 423 EEIINRKQDGTIYYAHQTIA--PIFSDFGMVISF--VAIQNDVTQQRESERRLWESETLY 478

Query: 205 SHLHEIKKGHSSVEKEKYDIFS------QQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
            +L E       +   +    S       +S         ++S L          +K   
Sbjct: 479 RNLFETAADSILLINPETLGISECNQATIESLGYGKDEIKQLSYLDIQPPDHQQRVKELV 538

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
             +   ++++   Q    T  L +         L                        + 
Sbjct: 539 QGISEFDQATFDTQHTTKTGELREVNVHMTLLNLDQRKLLLAIMHDVTERRQAERTIQQS 598

Query: 319 ENLTPETVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
           E       +        ++ G +  Y +P+ + L  Y+  + +              +  
Sbjct: 599 ERKYRMLAENSSDMISQHAPGGIYLYVSPACIRLLGYEQEELLGRQ-------VEEIIHP 651

Query: 378 NNAIKPVMLYRSDRTCIAASAR--LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
            +  + + + ++     +      ++ IQ    +            +Q         I  
Sbjct: 652 EDIERVIEIGKNHLGSPSERITTLVYRIQKKDGSYTWFETHSRRTDSQE-----IIAISR 706

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATS 462
           +  +    +R +E         L   S
Sbjct: 707 DISERIAMERGLEEANKAKSMFLANMS 733


>gi|254424944|ref|ZP_05038662.1| PAS fold family [Synechococcus sp. PCC 7335]
 gi|196192433|gb|EDX87397.1| PAS fold family [Synechococcus sp. PCC 7335]
          Length = 1492

 Score =  349 bits (896), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 119/656 (18%), Positives = 223/656 (33%), Gaps = 43/656 (6%)

Query: 195  ALGKRLDKKFSHLHEIKKGHSSVEKEKY-DIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253
             L +  +   + L     G   +++  Y   F+  +          V      + ++   
Sbjct: 708  ELVQLNEDIDNLLRSTNVGVVFLDRNLYIRKFTPAAAAVVNLQAGDVDRPIANFTNRLVE 767

Query: 254  LKTEKYPLLTSEESSLPEQED--FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
               +          SL E+E     T          Y          +  +L       +
Sbjct: 768  TSLDALAREVIAHESLIEKEVCNADTKESLLLRAYPYIKADGELDGVTLTFLEVTELKRV 827

Query: 312  SAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLL-TKYKSVDDIEIAGGLSTLL 370
             A  +E   +        P+ F ++        N  F+ L      +D + I   +   +
Sbjct: 828  QAKLEESNAVLETVYATSPVGFALHDE------NLRFVRLNQMLAEIDQLSIEEHIGRTM 881

Query: 371  DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN--SLAMTFIPFEKANQFPENM 428
                 S+       +  +   T               E           F    +     
Sbjct: 882  AEILPSEIGEQAMALHRQVLETGNPVLDYEFEGALPTEPDAYRHWLASYFPVDLKNGRRW 941

Query: 429  PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGY 487
                +  E    +  + +++        + E+    I I +         N +VSK+ GY
Sbjct: 942  -VAAVVNEITAIKKVQTELQDSRNFAQRLSESNPGIIYIYDIPSMSATYLNSSVSKILGY 1000

Query: 488  PVEDILR---KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
               ++           +     S +  Y    +  +    LE       K      + + 
Sbjct: 1001 TPREVRDMGDHIIQRLVHPKDFSKVIQYYQRFI-HNHTDVLETELQIKHKNGSWRWIALR 1059

Query: 545  IKKLPFS-----SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH----------KSDFL 589
                                DI+  K  + +L+  K+  E   +           KS+FL
Sbjct: 1060 SVAFDVDSAGRVQQVLGLATDITGRKTTERRLTKQKQTLENAIAAAQAADSANQAKSEFL 1119

Query: 590  ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
            A +SHEIRTP+  I+G S++++        N R       + R+G  +L ++ND+LD+SK
Sbjct: 1120 ANMSHEIRTPMNLILGTSQLLERTGL----NERQQNLLEVLQRNGQTLLTLINDVLDLSK 1175

Query: 650  IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIA 708
            +E+ ++++  +P  L   +    +     A EK + I     + +P  ++ D   ++QI 
Sbjct: 1176 LEAQELHIDCKPFDLGTLLKTTFANFAPSAEEKGLSITLEVDSTLPTLVIGDSFRLQQIL 1235

Query: 709  LNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIP 764
             N+L NA+ FT  G  I + +      +    V   V DTGVG+     E   +PF Q  
Sbjct: 1236 HNLLGNAVKFTAKGS-IQLRSQRIQRAKNKVTVRFSVTDTGVGIHPDAQENLFEPFIQAD 1294

Query: 765  NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820
            NS   +  GTGLGL + + +V+   G+  + S P +G+    + PL       D +
Sbjct: 1295 NSSTRQYGGTGLGLTICRRIVELMRGEIGVESQPNQGSTFWFVVPLEKAGDSEDVL 1350



 Score = 44.6 bits (104), Expect = 0.077,   Method: Composition-based stats.
 Identities = 19/251 (7%), Positives = 60/251 (23%), Gaps = 17/251 (6%)

Query: 90   DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI-GDLLKRQNTWYG--K 146
            D +     +++ L +       + IG  + ++      +    +   +L+  N       
Sbjct: 853  DENLRFVRLNQMLAEIDQLSIEEHIGRTMAEILPSEIGEQAMALHRQVLETGNPVLDYEF 912

Query: 147  TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                P E       +  +  P+  +N          +V+        +   +        
Sbjct: 913  EGALPTEPDAYRHWL-ASYFPVDLKNGRRWVA---AVVNEITAIKKVQTELQDSRNFAQR 968

Query: 207  LHEIKKGHS---SVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY------AHKDDVLKTE 257
            L E   G      +        +            +V  + ++             +   
Sbjct: 969  LSESNPGIIYIYDIPSMSATYLNSSVSKILGYTPREVRDMGDHIIQRLVHPKDFSKVIQY 1028

Query: 258  KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ-NNSKESFEYLSHRNHPSLSAYFD 316
                + +    L  +      N +             +++    + L      +     +
Sbjct: 1029 YQRFIHNHTDVLETELQIKHKNGSWRWIALRSVAFDVDSAGRVQQVLGLATDITGRKTTE 1088

Query: 317  EGENLTPETVD 327
                   +T++
Sbjct: 1089 RRLTKQKQTLE 1099


>gi|158333667|ref|YP_001514839.1| two-component hybrid histidine kinase sensor and regulator
           [Acaryochloris marina MBIC11017]
 gi|158303908|gb|ABW25525.1| two-component hybrid histidine kinase sensor and regulator
           [Acaryochloris marina MBIC11017]
          Length = 768

 Score =  349 bits (896), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 101/526 (19%), Positives = 193/526 (36%), Gaps = 47/526 (8%)

Query: 323 PETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
              +D           +G +   N   L    Y   + I+    +  +   P+  +  A 
Sbjct: 18  QAILDSADFVIVSTDINGLIQTLNAGALKQFGYSPEEIIDRVTPI--IFHDPEEVEQRAQ 75

Query: 382 ---KPVMLYRSDR-TCIAASARLHTIQ-------WNRENSLAMTFIPFEKANQFPENMPQ 430
                +          +   AR+  +            +   +        N        
Sbjct: 76  VLSHELGHAIEPGMETLIVKARMGMVDENIWTLIRKDHSRFPVRLSVTALRNDLGHLTGF 135

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490
            GI  +    +  +  +     +  +  +    G+A+++  G  L  N A++ L GYP  
Sbjct: 136 LGIGKDITAQQAAEASLVESEARFSAAFQNAPIGMALVSPSGQCLRVNHALAHLLGYPQT 195

Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
            ++    T  +     S+       +++               ++   + + + +  +  
Sbjct: 196 KLMDLILTEMIHPKDRSIEETNRLRLVA-REIGNYCLELRCLHQQGHEVWVLMNVSLVNG 254

Query: 551 SSCY----SLTMHDISEWKQEKNKLSHAKKIAEK------------------ESSHKSDF 588
              Y     + + DI+  KQ + +L       E+                   +  KS F
Sbjct: 255 QEVYPPYCIVQVQDITRRKQAEAQLQRLNANLEQLVEERTRQLKEAIETTEIANQAKSRF 314

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
           +A +SHE RTPL  I+GFS+++   R             N I RSG  +L +VN+++ +S
Sbjct: 315 IANMSHEFRTPLNGIMGFSQLLLQDRRITSD---QQSNLNVILRSGEHLLSLVNEVITLS 371

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQI 707
           KIE+G +    + V+L         L+ L AN K I  +   A ++P+ +  D + ++QI
Sbjct: 372 KIEAGMLAYESKDVNLHHLCEGVEDLLSLQANSKDIQFQIHIAPDVPQYVRTDAKKLRQI 431

Query: 708 ALNILSNAIHFTPSGGQI-IISTT----HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
            +N+L NA+ FT  G  +  +         S  E+   ++DTG G+  + L +  +PF Q
Sbjct: 432 LINLLGNALKFTKRGSVVCQVQWRPSAPERSAHELHFIIQDTGPGIPGHLLPQLFEPFAQ 491

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
                +    G GLGL + +  +    G   I S   +GT +    
Sbjct: 492 -DPLNRETFGGIGLGLTICQRFIHLMKGDISIESVEGQGTTVSFYI 536



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/154 (13%), Positives = 46/154 (29%), Gaps = 18/154 (11%)

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
           +       +IL++    I   +  G+I + N    K FGY  E+I+ +   +        
Sbjct: 11  QHSQSWQQAILDSADFVIVSTDINGLIQTLNAGALKQFGYSPEEIIDRVTPIIFHDPEEV 70

Query: 508 VMNHYLTE--------------ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-- 551
                +                I+   +    E I     K+     +R+ +  L     
Sbjct: 71  EQRAQVLSHELGHAIEPGMETLIVKARMGMVDENIWTLIRKDHSRFPVRLSVTALRNDLG 130

Query: 552 --SCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
             + +     DI+  +  +  L  ++        
Sbjct: 131 HLTGFLGIGKDITAQQAAEASLVESEARFSAAFQ 164



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/336 (9%), Positives = 85/336 (25%), Gaps = 36/336 (10%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL------------ 136
            D +G ++ ++    K  G    ++I      V+ I+  DP                   
Sbjct: 31  TDINGLIQTLNAGALKQFGYSPEEIIDR----VTPIIFHDPEEVEQRAQVLSHELGHAIE 86

Query: 137 -------LKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRV 189
                  +K +     +     I   +   P+ L+   + +     +GF G G       
Sbjct: 87  PGMETLIVKARMGMVDENIWTLIRKDHSRFPVRLSVTALRNDLGHLTGFLGIG--KDITA 144

Query: 190 DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK-----VSSLT 244
                A     + +FS   +      ++               HL    +     +    
Sbjct: 145 QQAAEASLVESEARFSAAFQNAPIGMALVSPSGQCLRVNHALAHLLGYPQTKLMDLILTE 204

Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
             +     + +T +  L+  E  +   +        ++         +          + 
Sbjct: 205 MIHPKDRSIEETNRLRLVAREIGNYCLELRCLHQQGHEVWVLMNVSLVNGQEVYPPYCIV 264

Query: 305 HRNHPSLSAYFDEGENLTPETVDKC------PIPFFVYSHGNLFYANPSFLLLTKYKSVD 358
                +     +         +++        +   + +      A   F+    ++   
Sbjct: 265 QVQDITRRKQAEAQLQRLNANLEQLVEERTRQLKEAIETTEIANQAKSRFIANMSHEFRT 324

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394
            +    G S LL   +   ++    + +       +
Sbjct: 325 PLNGIMGFSQLLLQDRRITSDQQSNLNVILRSGEHL 360



 Score = 41.2 bits (95), Expect = 0.75,   Method: Composition-based stats.
 Identities = 25/188 (13%), Positives = 55/188 (29%), Gaps = 11/188 (5%)

Query: 54  FTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM 113
              Q  E+    +       F   PI   +     +   G    ++  L   +G    K+
Sbjct: 143 TAQQAAEASLVESEARFSAAFQNAPIGMAL-----VSPSGQCLRVNHALAHLLGYPQTKL 197

Query: 114 IGMRLCDVSDILH--IDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSR 171
           + + L ++       I+  N +  + +    +  +      +G    V + +    +  +
Sbjct: 198 MDLILTEMIHPKDRSIEETNRLRLVAREIGNYCLELRCLHQQGH--EVWVLMNVSLVNGQ 255

Query: 172 NREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231
             E         V          A  +RL+     L E +        E  +I +Q    
Sbjct: 256 --EVYPPYCIVQVQDITRRKQAEAQLQRLNANLEQLVEERTRQLKEAIETTEIANQAKSR 313

Query: 232 PHLRMKNK 239
               M ++
Sbjct: 314 FIANMSHE 321


>gi|300869348|ref|ZP_07113938.1| Sensor protein [Oscillatoria sp. PCC 6506]
 gi|300332647|emb|CBN59136.1| Sensor protein [Oscillatoria sp. PCC 6506]
          Length = 1504

 Score =  349 bits (896), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 128/762 (16%), Positives = 252/762 (33%), Gaps = 67/762 (8%)

Query: 92   HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGKTTLW 150
               ++ ++            + IG  LC++          +    +++   +    + ++
Sbjct: 630  DFRIEYVNNAAFLNNQMTGEEQIGRGLCELLPNHRESGLFDEYCQVVETGQSLVKDSLVY 689

Query: 151  PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR---ALGKRLDKKFSHL 207
              E     +      +  +       G                      G+   ++    
Sbjct: 690  EDEYGQQRL------VRAFDIRIAKLGDGFVATWRDITDRKQTEVELQEGRTQLQQQLAE 743

Query: 208  HEIKKGHSSVEKEKYDI--------FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
             E    ++ +     D                 +    +   ++ E      D  +    
Sbjct: 744  IEAIYQNAPIGLAILDTDLRFVRINQRLAEINGYSVEAHLGCTIRELLPDLADAAEGILR 803

Query: 260  PLLTSEESSLPEQ---EDFHTINLNQYTKKQYFGTLQNNSKESFEYL--SHRNHPSLSAY 314
            P+L + E  L  +   E      + +   + +     N+       +             
Sbjct: 804  PILETGEPLLNVEIRGETPARPGVPRIWLEHFLPLKHNDRIIGISTVCEEITERIQTELL 863

Query: 315  FDEGENLTPETVDKCPIPFFV-----YSHGN-----LFYANPSFLLLTKYKSVDDIEIAG 364
              E E       +     F V               L   NP F   T       ++ A 
Sbjct: 864  LRESEERYRTLFESMNEGFCVIEMLFDERDRPIDYHLLEINPVFEQQTG------LKQAQ 917

Query: 365  GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
            G +     P L +N+  +                       N   ++   F         
Sbjct: 918  GKTVRQIVPNL-ENHWFEIYGDIALTGKPARFE--------NGSQAMNRWFEVSAFRVGK 968

Query: 425  PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
            PE+     +  +  D +  +  +     +   + E     +   N EG +L  N+  S  
Sbjct: 969  PESRRVAILFKDISDRKQVEAALRQSEERYRCLAELIPQLVWTANAEGALLDVNQRWSNF 1028

Query: 485  FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
             G  +E +    +   +       +    TE +      + +        +         
Sbjct: 1029 TGLTLEQVHINGWEQVVHSEDLPALFQAWTEAVQQG--SSYQAEGRMRRADGVYRWHLHQ 1086

Query: 545  IKKLPFSSC----YSLTMHDISEWKQEKNKL-------SHAKKIAEKESSHKSDFLARVS 593
                         +  T  DI   KQ + +          A++ AE+ +  K +FLA +S
Sbjct: 1087 AIGQKNEQGQIVKWFGTATDIEAQKQLEVERDRLLQLEQTAREAAERANRIKDEFLAILS 1146

Query: 594  HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
            HE+R+PL  I+G++++++ ++F  +   +  E    I+R+  L   +++DLLD++KI  G
Sbjct: 1147 HELRSPLNPILGWTKLLQTRKFNEI---KTAEALATIERNAKLQCQLIDDLLDVAKILRG 1203

Query: 654  KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713
            K+++   PV+L   +  AI  V+  A  K IL+      NI ++  D   ++QI  N+LS
Sbjct: 1204 KLSIDTTPVNLVFVIESAIDTVRTAAVSKSILLHPVL-PNIGQVAGDSTRLQQIVWNLLS 1262

Query: 714  NAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
            NAI FTP+GG++ I      +    + V DTG G+    L    + F Q   S   +  G
Sbjct: 1263 NAIKFTPNGGRVDIRIERVKD-SAHIIVSDTGKGINPAFLPYIFESFRQEDVSITRKYGG 1321

Query: 774  TGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFPLYDTS 814
             GLGL + + +V+A+ G     S     G    +  PL + +
Sbjct: 1322 LGLGLAIVRNLVEAHGGTISADSPGEGLGATFTVRLPLLNLA 1363



 Score =  115 bits (288), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 44/423 (10%), Positives = 117/423 (27%), Gaps = 31/423 (7%)

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ---SPPPHLRMKNKVS 241
           H         A  +  +++     +  +  +     +    +          L       
Sbjct: 329 HELAERQQVEAALRESEERLQLALKASRMGTWNWNLQTGKITWSDNLEALFGLEPGEFDG 388

Query: 242 SLTEYYAH---KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE 298
           S   + A     D            S   +   +      N            L + + +
Sbjct: 389 SFEMFVARLHPDDRDRVVGAVDRAISTGENYDIEFRIVYPNGTMRWTMSQGKVLYDQNGQ 448

Query: 299 SFEY----LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLT 352
             E     L        +A     E+   +  +     F++       + Y +P++  L 
Sbjct: 449 PMEMTGIDLDITERKRSAAALYASEDRFRQLAENINAVFWIKEIPENQVSYVSPAYQHLW 508

Query: 353 KYKSVDDI-EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411
                +   +    +  +    +   N A +                    I     N  
Sbjct: 509 GLNPQELYKDQQVWVDRIYPEDREEVNRAFQEKAAAGKFDEEY-------RIVLADGNIR 561

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD--GIA--I 467
            +    F   ++  E     GI  +  D + +++ +     +  + ++   D  GI   +
Sbjct: 562 WVRDRCFPLHDETGEIYRFTGIAEDITDRKHSEQALRESEERFRTSVDNMLDCFGIYSAM 621

Query: 468 INREG-----IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522
            N +G      I   N A         E+ + +     L  +  S +     +++    +
Sbjct: 622 RNEQGQIVDFRIEYVNNAAFLNNQMTGEEQIGRGLCELLPNHRESGLFDEYCQVVETG-Q 680

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPF-SSCYSLTMHDISEWKQEKNKLSHAKKIAEKE 581
             ++   +   +  +   +R    ++      +  T  DI++ KQ + +L   +   +++
Sbjct: 681 SLVKDSLVYEDEYGQQRLVRAFDIRIAKLGDGFVATWRDITDRKQTEVELQEGRTQLQQQ 740

Query: 582 SSH 584
            + 
Sbjct: 741 LAE 743



 Score =  113 bits (284), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 50/535 (9%), Positives = 129/535 (24%), Gaps = 54/535 (10%)

Query: 91   AHGYLKEISEELPKTIGNYAFKMIGMR--LCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
                +  +S       G    ++   +    D       +  N           +  +  
Sbjct: 493  PENQVSYVSPAYQHLWGLNPQELYKDQQVWVDRIYPEDREEVNRAFQEKAAAGKFDEEYR 552

Query: 149  LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
            +   +G      +     P++    E   +R  GI              +  +++F    
Sbjct: 553  IVLADGNIR--WVRDRCFPLHDETGEI--YRFTGIAEDITDRKHSEQALRESEERFRTSV 608

Query: 209  EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
            +       +          Q     +   N  ++        ++ +      LL +   S
Sbjct: 609  DNMLDCFGIYSA-MRNEQGQIVDFRIEYVNN-AAFLNNQMTGEEQIGRGLCELLPNHRES 666

Query: 269  LPEQEDFHTINLNQ-------------------YTKKQYFGTLQNNSKESFEYLSHRNHP 309
                E    +   Q                            L +    ++  ++ R   
Sbjct: 667  GLFDEYCQVVETGQSLVKDSLVYEDEYGQQRLVRAFDIRIAKLGDGFVATWRDITDRKQT 726

Query: 310  SLSA-----YFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIA 363
             +          +            PI   +          N     +  Y     +   
Sbjct: 727  EVELQEGRTQLQQQLAEIEAIYQNAPIGLAILDTDLRFVRINQRLAEINGYSVEAHLGCT 786

Query: 364  GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
              +  LL     +    ++P+    +    +    R  T        + +          
Sbjct: 787  --IRELLPDLADAAEGILRPI--LETGEPLLNVEIRGETPARPGVPRIWLEHF--LPLKH 840

Query: 424  FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII-------NR--EGII 474
                +  + +  E  +    +  +     +  ++ E+ ++G  +I       +R  +  +
Sbjct: 841  NDRIIGISTVCEEITERIQTELLLRESEERYRTLFESMNEGFCVIEMLFDERDRPIDYHL 900

Query: 475  LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
            L  N    +  G   +    K     +          Y    L+    +       GS  
Sbjct: 901  LEINPVFEQQTGL--KQAQGKTVRQIVPNLENHWFEIYGDIALTGKPARFEN----GSQA 954

Query: 535  EEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
              +   +       P S   ++   DIS+ KQ +  L  +++     +      +
Sbjct: 955  MNRWFEVSAFRVGKPESRRVAILFKDISDRKQVEAALRQSEERYRCLAELIPQLV 1009



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 33/325 (10%), Positives = 88/325 (27%), Gaps = 25/325 (7%)

Query: 275 FHTINLNQYTKKQYFGTLQNNSKESFEYLSHR----NHPSLSAYFDEGENLTPETVDKCP 330
            H     +  +      L+  + +    L             A   + E    E+ ++  
Sbjct: 290 AHHCLAPRSWQPLEIELLKELTIQVGIALRQAELYQQAKHELAERQQVEAALRESEERLQ 349

Query: 331 IPFFVYSHGNLFYANPSFLLLTKYKSVDDI-----EIAGGLSTLLDAPKLSDNNAI--KP 383
           +       G     N     +T   +++ +         G   +  A    D+       
Sbjct: 350 LALKASRMGTWN-WNLQTGKITWSDNLEALFGLEPGEFDGSFEMFVARLHPDDRDRVVGA 408

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
           V    S             I +                +Q  + M   GI+ +  + + +
Sbjct: 409 VDRAISTGENYDIE---FRIVYPNGTMRWTMSQGKVLYDQNGQPMEMTGIDLDITERKRS 465

Query: 444 KRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDIL--RKPFTVF 500
              +     +   + E  +    I    E  +   + A   L+G   +++   ++ +   
Sbjct: 466 AAALYASEDRFRQLAENINAVFWIKEIPENQVSYVSPAYQHLWGLNPQELYKDQQVWVDR 525

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSL 556
           +       +N    E  +       ++       +  +  +R     L   +     ++ 
Sbjct: 526 IYPEDREEVNRAFQEKAAAGK---FDEEYRIVLADGNIRWVRDRCFPLHDETGEIYRFTG 582

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKE 581
              DI++ K  +  L  +++     
Sbjct: 583 IAEDITDRKHSEQALRESEERFRTS 607



 Score = 90.9 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 34/388 (8%), Positives = 97/388 (25%), Gaps = 27/388 (6%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            +D       I++ L +  G      +G  + ++   L       +  +L+          
Sbjct: 758  LDTDLRFVRINQRLAEINGYSVEAHLGCTIRELLPDLADAAEGILRPILETGEPLLNVEI 817

Query: 149  L--WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                P       + ++   LP+   +R   G     +            L +  ++++  
Sbjct: 818  RGETPARPGVPRIWLE-HFLPLKHNDR-IIGIST--VCEEITERIQTELLLRESEERYRT 873

Query: 207  LHEIKKG----HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
            L E           +  E+           +   + +             ++   +    
Sbjct: 874  LFESMNEGFCVIEMLFDERDRPIDYHLLEINPVFEQQTGLKQAQGKTVRQIVPNLENHWF 933

Query: 263  TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS-----HRNHPSLSAYFDE 317
                      +     N +Q   + +  +     K     ++       +   + A   +
Sbjct: 934  EIYGDIALTGKPARFENGSQAMNRWFEVSAFRVGKPESRRVAILFKDISDRKQVEAALRQ 993

Query: 318  GENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
             E       +  P   +   + G L   N  +   T       +E               
Sbjct: 994  SEERYRCLAELIPQLVWTANAEGALLDVNQRWSNFTGLT----LEQVHINGWEQVVHSED 1049

Query: 377  DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
                 +         +   A  R+   +               + N+  + +   G   +
Sbjct: 1050 LPALFQAWTEAVQQGSSYQAEGRM---RRADGVYRWHLHQAIGQKNEQGQIVKWFGTATD 1106

Query: 437  DVDTRINKRKMEIEVMQLCSILEATSDG 464
                   ++++E+E  +L  + +   + 
Sbjct: 1107 I----EAQKQLEVERDRLLQLEQTAREA 1130



 Score = 58.1 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 23/189 (12%), Positives = 56/189 (29%), Gaps = 6/189 (3%)

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459
           L    W       +  +  +      +       + E  + +  +  +     +L   L+
Sbjct: 294 LAPRSWQPLEIELLKELTIQVGIALRQAELYQQAKHELAERQQVEAALRESEERLQLALK 353

Query: 460 ATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEI 516
           A+  G    N + G I   +  +  LFG    +     + F   L  +    +   +   
Sbjct: 354 ASRMGTWNWNLQTGKIT-WSDNLEALFGLEPGEFDGSFEMFVARLHPDDRDRVVGAVDRA 412

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH--DISEWKQEKNKLSHA 574
           +S      +E   +      +    +  +          +T    DI+E K+    L  +
Sbjct: 413 ISTGENYDIEFRIVYPNGTMRWTMSQGKVLYDQNGQPMEMTGIDLDITERKRSAAALYAS 472

Query: 575 KKIAEKESS 583
           +    + + 
Sbjct: 473 EDRFRQLAE 481



 Score = 55.0 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/184 (11%), Positives = 55/184 (29%), Gaps = 6/184 (3%)

Query: 54   FTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM 113
            F D +           SE  +         +  W  +A G L ++++      G    ++
Sbjct: 978  FKDISDRKQVEAALRQSEERYRCLAELIP-QLVWTANAEGALLDVNQRWSNFTGLTLEQV 1036

Query: 114  IGMRLCDVSDILHIDPNNHIG-DLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172
                   V     +        + +++ +++  +  +   +G  +Y      A+   +  
Sbjct: 1037 HINGWEQVVHSEDLPALFQAWTEAVQQGSSYQAEGRMRRADG--VYRWHLHQAIGQKNEQ 1094

Query: 173  REFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP 232
             +    + FG                RL +      E  +  + ++ E   I S +   P
Sbjct: 1095 GQIV--KWFGTATDIEAQKQLEVERDRLLQLEQTAREAAERANRIKDEFLAILSHELRSP 1152

Query: 233  HLRM 236
               +
Sbjct: 1153 LNPI 1156


>gi|309792184|ref|ZP_07686656.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides
           DG6]
 gi|308225725|gb|EFO79481.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides
           DG6]
          Length = 887

 Score =  349 bits (895), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 114/746 (15%), Positives = 232/746 (31%), Gaps = 46/746 (6%)

Query: 94  YLKEISEELPKTIGNYAFKMIGMR--LCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151
            +   S    + +G      +        V     +D    +            +  +  
Sbjct: 151 RILFSSAAFERVLGYSLQCFVDDPNFFMRVVHPDDLDLAITMRQKALTDGHIEFEHRMLL 210

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
             G      I   +  I+               H               +++     E  
Sbjct: 211 PNG--AVRWILRRSWVIFDDQGRPLIVN--DHAHDITKHKQTEIALMESEQRLRLFVEHA 266

Query: 212 KGHSSVEKEKYDIF----------SQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
               ++                    +      R    V      Y  +      +    
Sbjct: 267 PAAIAMFDRTMVYLLASRRYLEDYQLKDCAIIGRSHYDVFPEIPDYWREIHQRCLQGAVE 326

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
               E           +    +  +   G +      S                ++    
Sbjct: 327 KNEGEPFPRSDGRVDWVRWELHPWRDLQGEIGGLVLFSEVITQRVEALQAFKASEQRYRQ 386

Query: 322 TPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
             E +   P        G +  ANP+      Y  V+ +++          P+    +  
Sbjct: 387 MFE-MHGLPKLIIALDTGQIINANPAAGRFYGYT-VEQLKMLNIADLTFLTPEEVHQHIQ 444

Query: 382 KPVML---------YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
           + +             +D         L  +++     L +      +  +  + + +  
Sbjct: 445 QTINANMYSVECLHRGADGYPRHVEMFLGLLEFEGRQELYVLITDVTERQRTRKALQEA- 503

Query: 433 IEPEDVDTRINKR--KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490
              + ++ R+  R  +++    Q+  +      G   ++  G+ +  N    +  GY  E
Sbjct: 504 --YDLMEQRVIARTIELQRYAAQVQDLYNNAPAGYHSLDTNGVFVQINDTELRWLGYTRE 561

Query: 491 DILRKP-FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
           ++L K      +   T  V              + LE   +   K+  +  + I    + 
Sbjct: 562 EVLGKKYILELISPATRHVFERNFPIFKQQGWIKNLEFELV--RKDGSIFPVLIDATAIF 619

Query: 550 FSSCYSLTMH----DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
                 +       D++E KQ  + L  A +   + S  KS F++  SHE RTPL AI+ 
Sbjct: 620 DDQGRFVHSRSTLYDMTERKQADDALRLAWQKEHELSELKSRFVSMASHEFRTPLAAILA 679

Query: 606 FSEVIKNQRFGPLGNPRYIEY-ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
            +E +    +    N   I+   + I +    + +I+ D+L +++I++G+M        L
Sbjct: 680 TTETL--TIYRDRMNEAQIDARLDKIRQQVMHMKEIMEDVLQLARIQAGRMEFRPLIEDL 737

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724
           D    E +   +    +    I  S          D R ++QI  N++SNA+ ++     
Sbjct: 738 DALCREIVEEYETQVRQPG-RIAYSCPQRPVLAEIDPRLMRQIISNLISNALKYSAPQSS 796

Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
           + I+        VIL V D G+G+   +L++   PF +  N   I   GTGLGL +A   
Sbjct: 797 VCITLQREVQ-RVILTVTDQGIGIPPNDLKRLFDPFHRATNVGTIA--GTGLGLSIAHQA 853

Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPL 810
           +D + G  +I S   +GT + +  PL
Sbjct: 854 IDLHHGTIHIASEVDQGTTMTVTIPL 879



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 46/132 (34%), Gaps = 10/132 (7%)

Query: 455 CSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKP--FTVFLEQNTPSVMNH 511
            +IL+   D     +  +  IL ++ A  ++ GY ++  +  P  F   +  +   +   
Sbjct: 132 QAILDTMLDAFTSFSLTDRRILFSSAAFERVLGYSLQCFVDDPNFFMRVVHPDDLDLAIT 191

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM----HDISEWKQE 567
              + L+      +E           +  +      +       L +    HDI++ KQ 
Sbjct: 192 MRQKALTDGH---IEFEHRMLLPNGAVRWILRRSWVIFDDQGRPLIVNDHAHDITKHKQT 248

Query: 568 KNKLSHAKKIAE 579
           +  L  +++   
Sbjct: 249 EIALMESEQRLR 260



 Score = 51.2 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/249 (10%), Positives = 68/249 (27%), Gaps = 12/249 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRL-CDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
           +D +G   +I++   + +G    +++G +   ++              + K+Q       
Sbjct: 539 LDTNGVFVQINDTELRWLGYTREEVLGKKYILELISPATRHVFERNFPIFKQQGWIKNLE 598

Query: 148 T-LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
             L   +G+    P+ + A  I+     F   R    ++            +   +K   
Sbjct: 599 FELVRKDGSIF--PVLIDATAIFDDQGRFVHSR--STLYDMTERKQADDALRLAWQKEHE 654

Query: 207 LHEIKKGHSSVEKEKYDI-FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
           L E+K    S+   ++    +            +          + D ++ +   +    
Sbjct: 655 LSELKSRFVSMASHEFRTPLAAILATTETLTIYRDRMNEAQIDARLDKIRQQVMHMKEIM 714

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH-----PSLSAYFDEGEN 320
           E  L            +   +      +   +E    +          P      +    
Sbjct: 715 EDVLQLARIQAGRMEFRPLIEDLDALCREIVEEYETQVRQPGRIAYSCPQRPVLAEIDPR 774

Query: 321 LTPETVDKC 329
           L  + +   
Sbjct: 775 LMRQIISNL 783


>gi|295401271|ref|ZP_06811243.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|312111907|ref|YP_003990223.1| signal transduction histidine kinase NtrB [Geobacillus sp. Y4.1MC1]
 gi|294976678|gb|EFG52284.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|311217008|gb|ADP75612.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Geobacillus sp. Y4.1MC1]
          Length = 744

 Score =  349 bits (895), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 111/722 (15%), Positives = 242/722 (33%), Gaps = 49/722 (6%)

Query: 93  GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPI 152
           G   +++E   +       ++IG ++    D++  D       +L +  ++  +  +   
Sbjct: 52  GEFVDVNEAACQLFEMEKRELIGKKMTMFLDLVPPDILMFQQSMLHKFGSFSDELLVKLR 111

Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212
            G   ++   +          EF       I+                +  F  +     
Sbjct: 112 NGKVKHIEFSMK----KDAFNEFD----LVIMRDISARKALERERIIHEFLFKDVFNRAV 163

Query: 213 GHSSVEKEKYDIFSQQSPP--PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270
               +  E                  K K+ +L+       + +      L   +E    
Sbjct: 164 DGIVIFDEFGRFIDVNPAFCMSLNLEKAKLLNLSFQQFIAKECVDDFVRLLAELKEKGTA 223

Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFE-YLSHRNHPSLSAYFDEGENLTPETVDKC 329
           + E             +   T    S              ++     + E       ++ 
Sbjct: 224 KGELSLVRFDGTVKMFELTTTSNVYSGFYMAIMRDVTERKNMEIKLQKSEERFRAIFEQA 283

Query: 330 PIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388
                ++   G +  AN +     +   ++ +     L  L       D    +    +R
Sbjct: 284 HEAILIWDDRGYILNANRAASRTFEL-PLNLLVRKNLLDFL----DRDDEKVQRVFAQFR 338

Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
                        T          + F       Q   +     I     + R  ++++ 
Sbjct: 339 KTGEIRDEL----TFHMPNGEDKQLEFT----MKQGAIDGYHLTIFRNVTERRKMEKELR 390

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
               +  SI +   +GI +   +  IL  N    + F    E +L +P T F+ +     
Sbjct: 391 ESEQKFRSIFDHAMNGILLWGEDYRILDVNPIACEFFQAAKEQLLHRPITAFIPEKARKH 450

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568
            +  + +                S+ E++ +    + K++       + + DI+E K+ +
Sbjct: 451 FDKLIQQCDRCGEAY---AEMDFSSGEKQKIVEFALKKEIIPGVGMIM-LRDITERKELE 506

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
            +L  +  +         +  A ++HEIR P+TA+ GF ++++           Y  Y N
Sbjct: 507 LQLRKSDTLNVV-----GELAAGIAHEIRNPMTALKGFIQLLQGSI-----KEDYSMYFN 556

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I      +  I+ + L ++K ++    + ++   + + + + I L+   A    + I  
Sbjct: 557 VIMSELKRIESIITEFLVLAKPQA----IQYQQNDVCKIMQDTIDLISAQAMMHNVQIVA 612

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748
            FA  IP I  +   +KQ+ +NIL NAI   P GG++ +      +  + + + D G G+
Sbjct: 613 DFALPIPCIYCEPNQLKQVFINILKNAIEVMPKGGEVTVRIGRLDDSHIRISITDQGCGI 672

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
              +++K  +PF         +  GTGLGL ++  +++ + GK  + S    GT   I  
Sbjct: 673 PQDKIKKLGEPFYTT------KERGTGLGLMVSYKIIEEHQGKIDVESEVGVGTTFHITL 726

Query: 809 PL 810
           P+
Sbjct: 727 PI 728



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/368 (8%), Positives = 99/368 (26%), Gaps = 32/368 (8%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D  G   +++     ++     K++ +          +D    +   LK + T  G+ +L
Sbjct: 170 DEFGRFIDVNPAFCMSLNLEKAKLLNLSFQQFIAKECVDDFVRLLAELKEKGTAKGELSL 229

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGF--GIVHVNRVDNDPRALGKRLDKKFSHL 207
              +GT     +   +          + + GF   I+       +     ++ +++F  +
Sbjct: 230 VRFDGTVKMFELTTTS----------NVYSGFYMAIMRDVTERKNMEIKLQKSEERFRAI 279

Query: 208 HEIK-KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS---LTEYYAHKDDVLKTEKYPLLT 263
            E   +     +   Y + + ++      +   +     L ++    D+ ++        
Sbjct: 280 FEQAHEAILIWDDRGYILNANRAASRTFELPLNLLVRKNLLDFLDRDDEKVQRVFAQFRK 339

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
           + E  + ++  FH  N      +        +      + +      +     E E    
Sbjct: 340 TGE--IRDELTFHMPNGEDKQLEFTMKQGAIDGYHLTIFRNVTERRKMEKELRESEQKFR 397

Query: 324 ETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
              D       ++     +   NP      +      +              + +     
Sbjct: 398 SIFDHAMNGILLWGEDYRILDVNPIACEFFQAAKEQLLHRP-------ITAFIPEKARKH 450

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
              L +    C  A A +      ++  +                     +  +  + + 
Sbjct: 451 FDKLIQQCDRCGEAYAEMDFSSGEKQKIVEFALKKEIIPGVGM------IMLRDITERKE 504

Query: 443 NKRKMEIE 450
            + ++   
Sbjct: 505 LELQLRKS 512



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 57/143 (39%), Gaps = 3/143 (2%)

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
           +  +        R+++ ++     I E + D I I N+ G  +  N A  +LF     ++
Sbjct: 13  LMVDVKLLEEENRRLKEQLNGYSIIFERSLDAIVIFNKSGEFVDVNEAACQLFEMEKREL 72

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
           + K  T+FL+   P ++    + +       +     L   +  K+  +   +KK  F+ 
Sbjct: 73  IGKKMTMFLDLVPPDILMFQQSMLHKFG---SFSDELLVKLRNGKVKHIEFSMKKDAFNE 129

Query: 553 CYSLTMHDISEWKQEKNKLSHAK 575
              + M DIS  K  + +    +
Sbjct: 130 FDLVIMRDISARKALERERIIHE 152


>gi|299133494|ref|ZP_07026688.1| multi-sensor signal transduction histidine kinase [Afipia sp.
           1NLS2]
 gi|298591330|gb|EFI51531.1| multi-sensor signal transduction histidine kinase [Afipia sp.
           1NLS2]
          Length = 600

 Score =  349 bits (895), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 120/372 (32%), Positives = 186/372 (50%), Gaps = 9/372 (2%)

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
           + +E  +   +    SD IA     G +   + A   L G P   +L       +     
Sbjct: 199 LAVEERRYRLLARNISDVIARHRANGDLNFISPAAEVLLGVPGPTLLLHGLFDRVHVADR 258

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEE-KLLSLRIIIKKLPFSS-------CYSLTM 558
                 L++        ++E      +    +   + +  + L  +             M
Sbjct: 259 PRYLTALSDAARGGEASSVEFRVRRESPHGPEFAWVEMRCRPLEPTQDQASGAFEVVSVM 318

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            D++E K ++  L  A++ AE+  + KS FLA +SHE+RTPL AIIGFSE+I  +    L
Sbjct: 319 RDVTERKMQEQALEAARQEAEQAGASKSRFLATMSHELRTPLNAIIGFSEMIAREDEMKL 378

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
              R  EYA  I+ SG  +L +VN +LD+SK+ESGK  L  EP +  EA+S   +L+ L 
Sbjct: 379 DAARRREYAGLINESGLHLLSVVNGILDMSKMESGKFELVSEPFAPREALSSCCNLMVLK 438

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738
           A +  I + T   +++P++  D R+ KQI LN+LSNAI FT  GG + +S       E++
Sbjct: 439 ARDNGIDLTTRMPSDLPQMTGDARAFKQILLNLLSNAIKFTGEGGSVTVSAQVE-GRELL 497

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           LRV DTG+G+   +L +   PF Q   S Q R EGTGLGL + K++V  + G+  + S  
Sbjct: 498 LRVADTGIGIGKDDLARLGNPFFQAGASYQGRREGTGLGLSIVKSLVSLHGGEMKVESEL 557

Query: 799 AKGTLIEIIFPL 810
            +GT I +  P+
Sbjct: 558 DRGTTISVRLPM 569



 Score = 46.2 bits (108), Expect = 0.024,   Method: Composition-based stats.
 Identities = 13/226 (5%), Positives = 47/226 (20%), Gaps = 17/226 (7%)

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN---- 295
           + ++    A             L    +++    +        +                
Sbjct: 117 LIAVPLEAALSASRRVVTAAVALALGCAAMLVVLESMNALPPSHLSSDVASLFTGLCIVL 176

Query: 296 ---SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLL 351
                    + +     +        E                +   G+L + +P+  +L
Sbjct: 177 ATIYAAGLAFGAESLARTSKHLLAVEERRYRLLARNISDVIARHRANGDLNFISPAAEVL 236

Query: 352 TKYKSVDDIEIAGGLSTLLDA-PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
                   +     L  L D          +  +          +   R+     +    
Sbjct: 237 LGVPGPTLL-----LHGLFDRVHVADRPRYLTALSDAARGGEASSVEFRVRRESPHGPEF 291

Query: 411 LAMTFIPFEKA---NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
             +           +Q         +  +  + ++ ++ +E    +
Sbjct: 292 AWVEMRCRPLEPTQDQASGAFEVVSVMRDVTERKMQEQALEAARQE 337



 Score = 40.0 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 15/174 (8%), Positives = 43/174 (24%), Gaps = 3/174 (1%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH-IDPNNHIGDLLKRQNTWYGKTTL 149
           A+G L  IS      +G     ++   L D   +         + D  +       +  +
Sbjct: 222 ANGDLNFISPAAEVLLGVPGPTLLLHGLFDRVHVADRPRYLTALSDAARGGEASSVEFRV 281

Query: 150 WPIEGTN-LYVPIDLAALPIYSRNREFSG-FRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                    +  +++   P+     + SG F    ++             +   ++    
Sbjct: 282 RRESPHGPEFAWVEMRCRPLEPTQDQASGAFEVVSVMRDVTERKMQEQALEAARQEAEQA 341

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
              K    +    +              +  +     +    ++      +  L
Sbjct: 342 GASKSRFLATMSHELRTPLNAIIGFSEMIAREDEMKLDAARRREYAGLINESGL 395


>gi|254412809|ref|ZP_05026582.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196180544|gb|EDX75535.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 622

 Score =  349 bits (895), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 91/512 (17%), Positives = 196/512 (38%), Gaps = 23/512 (4%)

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY--SHGNLFYANPSFLLLTKYKSVDDIE 361
                  +     E +      V       + +  S G   Y +P F  +  Y+  +   
Sbjct: 126 QIVQRKDIETSLRETQERFILAVRGSGDGLWDWNISTGE-VYFSPRFKQILGYEEQEGEN 184

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                 + +       +  +  +  +  +    A   RL     +      +        
Sbjct: 185 HYNFWESKVHPED--RDRVMAAMQNHLENHVPYAIEYRLCQKYGD---YCWIYARAQAIW 239

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
           ++  +     G   +  D +  +  ++    +  ++++ T  G  +++R+GI+L  N+  
Sbjct: 240 DETGKPTRMAGSISDITDRKRAEEALQQSEAKYRALIDTTQTGYVVLDRQGIVLDANQEY 299

Query: 482 SKLFGYPV-EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
            ++ G     DIL KP   ++           + + L           T        ++ 
Sbjct: 300 VRVTGQSNVSDILGKPVLDWIAPYDLERNVAEIQKALVER--SVQNLETDYCHANGTIIP 357

Query: 541 LRIIIKKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
           + I  + +             DI+E KQ + +L  A     + +     F    SH++R 
Sbjct: 358 IEINARVIDTDEGCRILALCRDITERKQARQELKAAIADLARSNQDLEQFAYVASHDLRE 417

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
           PL  I  +S+++  +  G L + R  +Y  YI  +   +  +++DLL  S++   K  L 
Sbjct: 418 PLRKIRSYSDLLVKRYRGKL-DERADKYIAYITDATQRMQSLISDLLTYSRV--SKPELI 474

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718
            EP  L   + + ++ +     E + +I T    ++P++ A+   + Q+  N+++N I F
Sbjct: 475 PEPTDLGHILKKTLADLSPLIKENKAIITTD---SLPQVNANPTQMAQLLQNLITNGIKF 531

Query: 719 -TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
            T    +I I T     +   + V+D G+GM     ++    F ++    +    GTG+G
Sbjct: 532 RTQQPPRIHI-TATREGQFWQIAVQDNGIGMDTQYCDRIFVIFQRLH--YREEYPGTGIG 588

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           L ++K +V+ + G+ ++ S   +GT      P
Sbjct: 589 LAVSKKIVERHGGQIWVESELGQGTTFYFTLP 620



 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/137 (14%), Positives = 44/137 (32%), Gaps = 8/137 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNY-AFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGK 146
           +D  G + + ++E  +  G      ++G  + D      ++ N   I   L  ++    +
Sbjct: 286 LDRQGIVLDANQEYVRVTGQSNVSDILGKPVLDWIAPYDLERNVAEIQKALVERSVQNLE 345

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
           T      GT   +PI++ A  I +        R   +          R   K      + 
Sbjct: 346 TDYCHANGTI--IPIEINARVIDTDEGC----RILALCRDITERKQARQELKAAIADLAR 399

Query: 207 LHEIKKGHSSVEKEKYD 223
            ++  +  + V      
Sbjct: 400 SNQDLEQFAYVASHDLR 416



 Score = 48.1 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/244 (9%), Positives = 65/244 (26%), Gaps = 14/244 (5%)

Query: 96  KEISEELPKTIGNYAFKMIGMRLCDVSDI-LHIDPNNHIGDLLKR--QNTWYGKTTLWPI 152
              S    + +G    +  G    +  +  +H +  + +   ++   +N           
Sbjct: 165 VYFSPRFKQILGYEEQE--GENHYNFWESKVHPEDRDRVMAAMQNHLENHVPYAIEYRLC 222

Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212
           +    Y  I   A  I+    + +  R  G +             ++ + K+  L +  +
Sbjct: 223 QKYGDYCWIYARAQAIWDETGKPT--RMAGSISDITDRKRAEEALQQSEAKYRALIDTTQ 280

Query: 213 GHSSVEKEKYDIFSQQSPPPHLRMKNKVS-----SLTEYYAHKDDVLKTEKYPLLTSEES 267
               V   +  +         +  ++ VS      + ++ A  D      +      E S
Sbjct: 281 TGYVVLDRQGIVLDANQEYVRVTGQSNVSDILGKPVLDWIAPYDLERNVAEIQKALVERS 340

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
               + D+   N      +     +  +       L+     +      +        + 
Sbjct: 341 VQNLETDYCHANGTIIPIEINARVIDTDEGCRI--LALCRDITERKQARQELKAAIADLA 398

Query: 328 KCPI 331
           +   
Sbjct: 399 RSNQ 402


>gi|309792417|ref|ZP_07686883.1| two-component hybrid sensor and regulator [Oscillochloris
           trichoides DG6]
 gi|308225527|gb|EFO79289.1| two-component hybrid sensor and regulator [Oscillochloris
           trichoides DG6]
          Length = 616

 Score =  349 bits (895), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 101/465 (21%), Positives = 187/465 (40%), Gaps = 18/465 (3%)

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
            +       L  L+     S  +A     L          S  L T     E    +   
Sbjct: 4   AELEVNQVALQELIHPDDRSRLDATLMAYLR---GETEHFSIELRTNPSEGEPRWVLCRG 60

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476
              + +     +   G   +  +    + ++     +  ++   +  GI   NR G    
Sbjct: 61  QAIEHDTDGAVVRMAGTYMDITERVAIEDQLRASEQRYQTLSTISPVGIYRANRHGFFTY 120

Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
            N     + G P +  L   +  ++      ++ ++  + +S      +         + 
Sbjct: 121 VNPRWCAIVGVPADAGLGMGWLRYIHPEDYMLVRNFWDKTISTQQESQI--EFRYLRPDG 178

Query: 537 KLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKES-------SHK 585
           ++  +   +      S     Y  T  DI+     + +L     + E+ +         K
Sbjct: 179 RICWVIAQVVAETDPSGSLLGYVGTQVDITRRMVVEERLRQQSALLEEANTNLAKAARLK 238

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
             FLA +SHE+RTPLT IIGFSE +    +G LG+ +      ++  +G  +L ++ND+L
Sbjct: 239 DQFLANMSHELRTPLTGIIGFSEALSQGLYGALGDAQQR-AVQHVFDNGQHLLQLINDIL 297

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
           D+++I +G ++L   PV +D+A  E I L+      K+     +       I AD+  V+
Sbjct: 298 DLARIGAGHVDLKLGPVLVDDACGEVIDLLNGLFQSKKQQFTYTACEAGLSIEADILRVR 357

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHT-SNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764
           QI +N+LSNA  FTP GG + +   +    +EV   + D G+G+   +     +PF Q+ 
Sbjct: 358 QILINLLSNASKFTPRGGALGLEIHYDAQRKEVQFCIWDHGIGIAANQQNMLFQPFVQLD 417

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +       GTGLGL L + +V  + G+  + S   +G+   +  P
Sbjct: 418 DRLARDQPGTGLGLALVRQLVTLHGGRIEVESRVGEGSRFRVFLP 462



 Score = 57.3 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 22/195 (11%), Positives = 53/195 (27%), Gaps = 4/195 (2%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL-LKRQNTWY 144
            +  + HG+   ++      +G  A   +GM               +  D  +  Q    
Sbjct: 109 IYRANRHGFFTYVNPRWCAIVGVPADAGLGMGWLRYIHPEDYMLVRNFWDKTISTQQESQ 168

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            +      +G   +V   + A      +    G+ G   V + R       L ++     
Sbjct: 169 IEFRYLRPDGRICWVIAQVVAE--TDPSGSLLGYVG-TQVDITRRMVVEERLRQQSALLE 225

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
                + K     ++   ++  +   P    +    +     Y    D  +     +  +
Sbjct: 226 EANTNLAKAARLKDQFLANMSHELRTPLTGIIGFSEALSQGLYGALGDAQQRAVQHVFDN 285

Query: 265 EESSLPEQEDFHTIN 279
            +  L    D   + 
Sbjct: 286 GQHLLQLINDILDLA 300


>gi|320354602|ref|YP_004195941.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
           2032]
 gi|320123104|gb|ADW18650.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
           2032]
          Length = 1058

 Score =  349 bits (895), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 124/672 (18%), Positives = 233/672 (34%), Gaps = 35/672 (5%)

Query: 172 NREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231
             +  G  G  +  + R     + L +                           +Q +  
Sbjct: 92  AGDQPGDTGATLTQLLREQPIIKELIQVDADGRVLARASTDAPVL---ADLFTVAQANWF 148

Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291
              R  +      +  A  +               +     + F  +    +  +     
Sbjct: 149 VTARRGDTYIGDMQLSAATEPYAVFAVPASRGGVIACRLRVDRFSQLVAELHFGRGGISY 208

Query: 292 LQNNSKESFEYLSHRNHPSLSAY--FDEGENLTPETVDKCPIPFFVYSHGNLFYANPS-- 347
           L +       +   R  P            +L   TVD     +  ++   +     +  
Sbjct: 209 LVSREGRVIAHSGSRLIPGAHEQGHHHHLLDLIRTTVDSWSGTYQNFNGHWVVGTIAAVP 268

Query: 348 ---FLLLTKYKSVDDIEI-AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403
              ++ +T+    +        L TL  A  +        V      +           +
Sbjct: 269 GTPWMAVTELPLEEAHAASWRALWTLFIAALIITATLTVLVTWLLKRQFLGPLEQLQQGV 328

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK-----RKMEIEVMQLCSIL 458
                 +L    I     +++             +  R  +     R M+    +  +I+
Sbjct: 329 TQIGHGALD-HRIVLAGPSEYLHLAGAFNHMAATLQQREAQLAEQNRAMQASEARYRAIV 387

Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
           E  ++ +      G I   N A  + F  P + +        L  + P      L  +  
Sbjct: 388 EDQTELVCRYLPTGDITFANEAFCRYFDRPRDQLDGVDCRQMLSPDNPEAALRLLDTLCP 447

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHA 574
                  E   +    + ++  L    + +         Y+   HD++E KQ    L   
Sbjct: 448 AHPVARSEHRLV--RPDGEIRWLHWTNRAIFDDRGNLVEYAGVGHDVTERKQTAEALLRT 505

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
           K+ AE  +  KS FLA +SHEIRTPL AIIG + +  + R     + +   +   +  + 
Sbjct: 506 KEEAEAANRAKSRFLANMSHEIRTPLNAIIGMTHLAMHTR----EDDKRQRFLATVAHAA 561

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
           + +L ++ND+LDISK+E+G+++L  EP      V  +++ +   A+EK + +R      +
Sbjct: 562 DSLLGLLNDILDISKMEAGQLSLATEPFDPRRLVEASVATLAAQASEKGLDLRLHLGPAL 621

Query: 695 PR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE------EVILRVRDTGVG 747
           P  +L D   ++QI LN+L NA+ FTP+G  I +       E       + LRV DTG+G
Sbjct: 622 PDCLLGDALRLRQILLNLLGNAVKFTPAG-TITLEAFAEEAEDADNRVYLHLRVTDTGIG 680

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           +   +LE     F Q  NS   +  G GLGL ++  +     G+ +  S   +G+    +
Sbjct: 681 IPAEKLELIFNRFEQADNSYGRQYGGAGLGLSISAQLAALMHGRLWAESRENQGSTFHCL 740

Query: 808 FPLYDTSHPHDC 819
            P    + P + 
Sbjct: 741 IPFPRCAWPAEA 752



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/245 (11%), Positives = 59/245 (24%), Gaps = 10/245 (4%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG-KTTL 149
             G +   +E   +       ++ G+    +    + +    + D L   +     +  L
Sbjct: 399 PTGDITFANEAFCRYFDRPRDQLDGVDCRQMLSPDNPEAALRLLDTLCPAHPVARSEHRL 458

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
              +G      +      I+        + G G  H             R  ++    + 
Sbjct: 459 VRPDGEIR--WLHWTNRAIFDDRGNLVEYAGVG--HDVTERKQTAEALLRTKEEAEAANR 514

Query: 210 IKKGHSSVEKEKYD-----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
            K    +    +       I        H R  +K        AH  D L      +L  
Sbjct: 515 AKSRFLANMSHEIRTPLNAIIGMTHLAMHTREDDKRQRFLATVAHAADSLLGLLNDILDI 574

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
            +    +          +   +    TL   + E    L     P+L            +
Sbjct: 575 SKMEAGQLSLATEPFDPRRLVEASVATLAAQASEKGLDLRLHLGPALPDCLLGDALRLRQ 634

Query: 325 TVDKC 329
            +   
Sbjct: 635 ILLNL 639


>gi|294496206|ref|YP_003542699.1| multi-sensor signal transduction histidine kinase [Methanohalophilus
            mahii DSM 5219]
 gi|292667205|gb|ADE37054.1| multi-sensor signal transduction histidine kinase [Methanohalophilus
            mahii DSM 5219]
          Length = 1108

 Score =  349 bits (895), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 129/724 (17%), Positives = 248/724 (34%), Gaps = 95/724 (13%)

Query: 168  IYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ 227
            I+   RE S   GF  ++   ++         L      +             +      
Sbjct: 394  IHDLFREVSDDLGFA-LYKIEMEKKRDQYETHL----HLMSRNMNDVILETDVEGRYTYI 448

Query: 228  QSPPPHL--RMKNKVSSLTEYYAHKDDVL-KTEKYPLLTSEESSLPEQEDFHTINLNQYT 284
                  +  R K  +        H DD+      +  +         +  +         
Sbjct: 449  SPSHQRILGRGKELLGKNCMKDLHPDDIDFVAGIFGEIVETGEQHHAEYRYLHPEKGYIW 508

Query: 285  KKQYFGTLQNNSKESFEYLSHRN---HPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GN 340
             +    +  + + +    ++ R+            + E      + + P   F+    G 
Sbjct: 509  LESVATSYVDENGQKRVLINTRDVTERKETENTLIKSEAKFKSYITQAPAGIFIADENGY 568

Query: 341  LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400
                NP+   +T Y   + + +        D  +   +     +   +           +
Sbjct: 569  YVDVNPAACEMTGYSKDELLGMNLLELLPHDIHRHVIDQFEDVINKGK-------IDIEI 621

Query: 401  HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM----------EIE 450
              +    +                       G   +    +  +  +          E E
Sbjct: 622  PYLTKEGDRKWW------RVTAAALPEGRVIGFVKDITIQKSTESDLSEALNRSQHREKE 675

Query: 451  VMQL----CSILEATSDGIA---IINREGIILSTNRAVSKLFGYPVED-----ILRKPFT 498
            + +L     +ILE     +    I +    ++        L     E+     +      
Sbjct: 676  ITELLNSTRAILEIDDFEVVARHIFDACARVIGAKAGYVALLSDTGEENELLFLEDGGMP 735

Query: 499  VFLEQNTPSVMNHYLTEILSLDLRQTLEK----ITLGSTKEEKLLSLRIIIKKLPFSSCY 554
              ++ + P  +     E                  +    E  ++   ++   L      
Sbjct: 736  CSVDPDLPMPVRGLRNEAYETGEVVFENDFMASEWVKYMPEGHMVLPNVLFSPLNIEGKT 795

Query: 555  SLTMH------DISEW-----------------------------KQEKNKLSHAKKIAE 579
               +       D +                               K+ ++ +  A ++A 
Sbjct: 796  VGVLGFAYKDGDFTIHDAWLAKTFGEHAAIALRNSRNFDVLKGTNKRLEDTVLKANELAA 855

Query: 580  KE---SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
            +    +  KS+FLA +SHE+RTPL +IIGFS+++  + FG L   +  +Y   I++SG  
Sbjct: 856  QAEYANKSKSEFLANMSHELRTPLNSIIGFSDILNGETFGKLT-QKQEKYTANINKSGKH 914

Query: 637  VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696
            +L ++N++LD+SKIE+GKM    +   L+   S+  S++ L A +K I +  S + +I  
Sbjct: 915  LLYLINEILDLSKIEAGKMEFVCDDFKLNSVFSDIESIISLQAQKKSIDLEISKSVDI-E 973

Query: 697  ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKA 756
            I AD   +KQI  N+LSNAI FT   G++ +S      + V + V+DTG+G+   + E  
Sbjct: 974  INADKSKIKQIIFNLLSNAIKFTDENGRVSMSARKVDRDRVEIAVKDTGIGIPEDKFETI 1033

Query: 757  MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL----YD 812
              PF Q+  S   +  GTGLGL L K  V+ + G+ ++ S   KG+      PL    +D
Sbjct: 1034 FDPFMQVDASTSRKYGGTGLGLALVKKYVEKHGGEVWVESEIGKGSTFMFTIPLKQPEFD 1093

Query: 813  TSHP 816
            + HP
Sbjct: 1094 SIHP 1097



 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 62/552 (11%), Positives = 134/552 (24%), Gaps = 77/552 (13%)

Query: 95  LKEISEELPKTIGNYAFK--MIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP- 151
              +++   K +G    +  +       +             D ++   T   K      
Sbjct: 149 FTHVNKASTKLVGYTPEEHYLDPQLAVKIIHPDD---KQRFLDYIE-GKTPIDKPIQVRW 204

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
           I      V I+    P+Y RN +     G G         + +   + +      +  I 
Sbjct: 205 IHKDGQVVWIEQRNTPVYDRNSDLIALEGIG--RDITDIKNAQKREEHIKNVLLAIRNI- 261

Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE--ESSL 269
                 E +   +  +        +    + +      K+ +     +    S       
Sbjct: 262 NQMIVKEHDPERLIQKACSNLTETLGYYSAWIALVDDEKNVISTASSFSDFASGFDRLDR 321

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFE------------------------YLSH 305
             +E      + Q   K     + + +   FE                         +  
Sbjct: 322 QLKEGIFPQCMQQVLAKDEILIMDDPAGNCFECPLSFKYSDRASLCYRLQYNSKVYGILS 381

Query: 306 RNHPSLSAYFDEGENLTPETVD---------------------------KCPIPFFVYS- 337
              P   A  DE  +L  E  D                                      
Sbjct: 382 VAVPRKYADMDEIHDLFREVSDDLGFALYKIEMEKKRDQYETHLHLMSRNMNDVILETDV 441

Query: 338 HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397
            G   Y +PS   +       ++     +  L              ++          A 
Sbjct: 442 EGRYTYISPSHQRILG--RGKELLGKNCMKDLHPDDIDFVAGIFGEIV---ETGEQHHAE 496

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
            R      + E                           +  + +  +  +     +  S 
Sbjct: 497 YR----YLHPEKGYIWLESVATSYVDENGQKRVLINTRDVTERKETENTLIKSEAKFKSY 552

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
           +     GI I +  G  +  N A  ++ GY  +++L       L  +    +     +++
Sbjct: 553 ITQAPAGIFIADENGYYVDVNPAACEMTGYSKDELLGMNLLELLPHDIHRHVIDQFEDVI 612

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI 577
           +      ++      TKE      R+    LP        + DI+  K  ++ LS A   
Sbjct: 613 NKGK---IDIEIPYLTKEGDRKWWRVTAAALP-EGRVIGFVKDITIQKSTESDLSEALNR 668

Query: 578 AEKESSHKSDFL 589
           ++      ++ L
Sbjct: 669 SQHREKEITELL 680



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/266 (9%), Positives = 58/266 (21%), Gaps = 13/266 (4%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID-PNNHIGDLLKRQNTWYGK 146
             D  G    IS    + +G    +++G           ID      G++++     + +
Sbjct: 438 ETDVEGRYTYISPSHQRILG-RGKELLGKNCMKDLHPDDIDFVAGIFGEIVETGEQHHAE 496

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                 E    Y+ ++  A      N +    R            +      + + KF  
Sbjct: 497 YRYLHPE--KGYIWLESVATSYVDENGQ---KRVLINTRDVTERKETENTLIKSEAKFKS 551

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
                     +  E                      +          D            
Sbjct: 552 YITQAPAGIFIADENGYYVDVNPAACEMTGYSKDELLGMNLLELLPHDIHRHVIDQFEDV 611

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE---YLSHRNHPSLSAYFDEGEN 320
             +  +  +  + T   ++   +     L       F     +       LS   +  ++
Sbjct: 612 INKGKIDIEIPYLTKEGDRKWWRVTAAALPEGRVIGFVKDITIQKSTESDLSEALNRSQH 671

Query: 321 LTPETVDKCPIPFFVYSHGNLFYANP 346
              E  +       +    +      
Sbjct: 672 REKEITELLNSTRAILEIDDFEVVAR 697



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/320 (11%), Positives = 93/320 (29%), Gaps = 14/320 (4%)

Query: 53  NFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFK 112
           N  D  +   +    + SE  F            +  D +GY  +++    +  G    +
Sbjct: 528 NTRDVTERKETENTLIKSEAKFKSYITQAPAG-IFIADENGYYVDVNPAACEMTGYSKDE 586

Query: 113 MIGMRLCDVS-DILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSR 171
           ++GM L ++    +H    +   D++ +             EG   +  +  AALP    
Sbjct: 587 LLGMNLLELLPHDIHRHVIDQFEDVINKGKIDIEIP-YLTKEGDRKWWRVTAAALP---- 641

Query: 172 NREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231
                GF     +  +   +   AL +   ++      +    + +E + +++ ++    
Sbjct: 642 EGRVIGFVKDITIQKSTESDLSEALNRSQHREKEITELLNSTRAILEIDDFEVVARHIFD 701

Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291
              R+   + +   Y A   D  +  +   L           D            + + T
Sbjct: 702 ACARV---IGAKAGYVALLSDTGEENELLFLEDGGMPCSVDPDLPMPVRGLR--NEAYET 756

Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF--FVYSHGNLFYANPSFL 349
            +   +  F       +             +P  ++   +    F Y  G+    +    
Sbjct: 757 GEVVFENDFMASEWVKYMPEGHMVLPNVLFSPLNIEGKTVGVLGFAYKDGDFTIHDAWLA 816

Query: 350 LLTKYKSVDDIEIAGGLSTL 369
                 +   +  +     L
Sbjct: 817 KTFGEHAAIALRNSRNFDVL 836



 Score = 46.9 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 18/142 (12%), Positives = 41/142 (28%), Gaps = 12/142 (8%)

Query: 447 MEIEVMQLCSILEATSDGIAI--INREGIILSTNRAVSKLFGYPVED--ILRKPFTVFLE 502
           +     +     E +SD I              N+A +KL GY  E+  +  +     + 
Sbjct: 120 LSQNEAKFYEFAERSSDLIYRYEFTPTPGFTHVNKASTKLVGYTPEEHYLDPQLAVKIIH 179

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS----LTM 558
            +       Y+                    K+ +++ +      +   +          
Sbjct: 180 PDDKQRFLDYIE----GKTPIDKPIQVRWIHKDGQVVWIEQRNTPVYDRNSDLIALEGIG 235

Query: 559 HDISEWKQEKNKLSHAKKIAEK 580
            DI++ K  + +  H K +   
Sbjct: 236 RDITDIKNAQKREEHIKNVLLA 257


>gi|226939943|ref|YP_002795016.1| Sensor protein [Laribacter hongkongensis HLHK9]
 gi|226714869|gb|ACO74007.1| Sensor protein [Laribacter hongkongensis HLHK9]
          Length = 1205

 Score =  349 bits (895), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 110/643 (17%), Positives = 214/643 (33%), Gaps = 32/643 (4%)

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244
            ++   +   A      +    L E+     S    ++ +               +    
Sbjct: 158 TLDDTRSQLVAAEHSYREVIDSLSEVVCRIDSHGYWQF-LNPAWETVSGYPAALSLGHSW 216

Query: 245 EYYAHKDDVLKTEK--YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302
               H  D ++ +     L+                + +      +   +  +  +    
Sbjct: 217 LARWHPADQVQAQIRFADLIAGAVEVCRFDVRCIAADGSLRWLSVHLRPMHGSDCQVSGC 276

Query: 303 LSHRNHPS----LSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSV 357
           +      +      A  D       + VD       ++     L   N     L  Y   
Sbjct: 277 VGTLTDVTETRLAEAELDRTRGQLADAVDSLDAGLLMFDAEDRLVLCNRKLFEL--YPDW 334

Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR--ENSLAMTF 415
                 G         ++S        M      +  A          +           
Sbjct: 335 TAHLRPGTTLESFLQAQISLGGPQAMGM------SEEAFRQYKLAQYRDGCKGQIEPFAR 388

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
              +  +    +     +  +  + +  +  + +   +    +E+ S G+   +     +
Sbjct: 389 GWLQVDSSRTRDGGMVSLHADISEYKALEAALRLSEERFKLAVESASLGLWDWDLVNGDM 448

Query: 476 STNRAVSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
             +  + +  G P        + +   +           L + L        +       
Sbjct: 449 YGSELLYRTTGQPHPVDTGVRRDWFDLVHPADLPHSRAALVQHLKQQTP-VFDSEIRIRD 507

Query: 534 KEEKLLSLRI-----IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
           +  +   +R+       +    +     T+ DI   K  +  +  AK+ AE+ S  KSDF
Sbjct: 508 QSGQYRWVRVCGRVVTRQASGRALRMIGTLADIEARKASEAAILSAKEAAEEASRAKSDF 567

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
           LA +SHEIRTP+  I+G +            +    EY + +D S  L+L ++ND+LD S
Sbjct: 568 LANMSHEIRTPMNGILGMT----RLCLATELSEEQREYLDMVDSSAQLLLTVINDILDFS 623

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQI 707
           KIE+GK+ L     SL E V + +  + L A EK + I      ++     AD   ++Q+
Sbjct: 624 KIEAGKLELSATDFSLRELVRDTLQPLALKAGEKGLEILCDIPPSLADSRHADATRLRQV 683

Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
             N+L NA+ FT  G ++ +     ++  +   VRDTG+G++   L +  + F Q  +S 
Sbjct: 684 LGNLLGNAVKFTEVG-EVELQVREQADGLLRFSVRDTGIGISREGLAQVFESFSQADSSI 742

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             R  GTGLGL ++  +V    G   + S    G+      PL
Sbjct: 743 SRRYGGTGLGLTISSRLVGMMGGTLQVESEAGLGSCFHFAVPL 785



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/375 (8%), Positives = 82/375 (21%), Gaps = 15/375 (4%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
            ID+HGY + ++       G  A   +G                     L        + 
Sbjct: 186 RIDSHGYWQFLNPAWETVSGYPAALSLGHSWLARWHPADQVQAQIRFADLIAGAVEVCRF 245

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
            +  I        + +   P++  + + SG    G +          A   R   + +  
Sbjct: 246 DVRCIAADGSLRWLSVHLRPMHGSDCQVSGC--VGTLTDVTETRLAEAELDRTRGQLADA 303

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHL--RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
            +       +   +  +         L       +   T   +     +       +   
Sbjct: 304 VDSLDAGLLMFDAEDRLVLCNRKLFELYPDWTAHLRPGTTLESFLQAQISLGGPQAMGMS 363

Query: 266 ESSLPEQEDFHTINL-------NQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
           E +  + +     +              Q   +   +      +     + +L A     
Sbjct: 364 EEAFRQYKLAQYRDGCKGQIEPFARGWLQVDSSRTRDGGMVSLHADISEYKALEAALRLS 423

Query: 319 ENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
           E      V+   +  + +    L   +     L    +     +  G+           +
Sbjct: 424 EERFKLAVESASLGLWDWD---LVNGDMYGSELLYRTTGQPHPVDTGVRRDWFDLVHPAD 480

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI-PFEKANQFPENMPQNGIEPED 437
                  L +  +           I+        +               +   G   + 
Sbjct: 481 LPHSRAALVQHLKQQTPVFDSEIRIRDQSGQYRWVRVCGRVVTRQASGRALRMIGTLADI 540

Query: 438 VDTRINKRKMEIEVM 452
              + ++  +     
Sbjct: 541 EARKASEAAILSAKE 555


>gi|157961260|ref|YP_001501294.1| multi-sensor hybrid histidine kinase [Shewanella pealeana ATCC
           700345]
 gi|157846260|gb|ABV86759.1| multi-sensor hybrid histidine kinase [Shewanella pealeana ATCC
           700345]
          Length = 1186

 Score =  349 bits (895), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 102/497 (20%), Positives = 197/497 (39%), Gaps = 19/497 (3%)

Query: 321 LTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
                +      F V    G +   NP+   L  Y   + I     L    +   + D  
Sbjct: 232 RLNAILQTAVDGFVVVDTQGVIEEVNPAVSRLFGYSPSELIGRNVSLLMPSNERNMHDEY 291

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
                 L  +D   +     L   + +       +        +  + +   G+  +  D
Sbjct: 292 IQH--YLKSADDKTVGKGRELLAQKKDGS---LFSIELSISKMRIDDEVLFLGLVKDLSD 346

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
            +  +   +     L + LE + D +  I+  G I   N A   LF +  E ++ +    
Sbjct: 347 VKCAQAAAQRTESILLATLEGSKDALVTIDTSGAIQEVNDAACLLFKFHSEQMIGQRLEE 406

Query: 500 -FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS--TKEEKLLSLRIIIKKLPFSSCYS- 555
                +     ++ L E  +      ++  T       + + +++ + +  +        
Sbjct: 407 VLFRADERDCFHNILEEYRATGEGLAVKHSTQMKATRSDGEKVAIELTLIPVQLGQEMLL 466

Query: 556 -LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
              + DIS   + + +L  AK+ AE+ S  KS FLA +SHEIR+PL A++G  E+I    
Sbjct: 467 TAFIRDISRRMEYETQLKLAKEQAEQGSEAKSRFLATMSHEIRSPLNAVLGSVELILEST 526

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                N     YA+    +G  +L  +ND+LD SKIE+G++ L     S  +  ++ + +
Sbjct: 527 L----NKEQRIYADTAKEAGTALLSTINDILDFSKIEAGQIVLEESAFSPAKLATQVLQV 582

Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
           +   A +K I +      N+P  ++ D + ++Q+  N++ NAI F+  GG + I      
Sbjct: 583 LSPKAQDKGIALAIYVNRNVPESLIGDGQRLRQVLHNLVDNAIKFSF-GGCVAIEMWLAD 641

Query: 734 NEEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
            +E  L  ++ D G+G++        + F Q+ ++      GTGLGL +   ++    G 
Sbjct: 642 VDEARLCCKISDQGIGISEESQLTLFEEFSQVHDTHNTNYSGTGLGLAICAELIAQMGGH 701

Query: 792 FYIFSTPAKGTLIEIIF 808
             + S   +G+      
Sbjct: 702 IGVDSQQGQGSCFSFDL 718



 Score = 90.9 bits (224), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 68/152 (44%), Gaps = 4/152 (2%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           + +    ++L +IL+   DG  +++ +G+I   N AVS+LFGY   +++ +  ++ +  N
Sbjct: 224 QALVSANVRLNAILQTAVDGFVVVDTQGVIEEVNPAVSRLFGYSPSELIGRNVSLLMPSN 283

Query: 505 TPSVMNHYLTEILSLDLRQTL--EKITLGSTKEEKLLSLRIIIK--KLPFSSCYSLTMHD 560
             ++ + Y+   L     +T+   +  L   K+  L S+ + I   ++     +   + D
Sbjct: 284 ERNMHDEYIQHYLKSADDKTVGKGRELLAQKKDGSLFSIELSISKMRIDDEVLFLGLVKD 343

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
           +S+ K  +      + I         D L  +
Sbjct: 344 LSDVKCAQAAAQRTESILLATLEGSKDALVTI 375



 Score = 51.2 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/256 (9%), Positives = 66/256 (25%), Gaps = 18/256 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTWY--- 144
           +D  G ++E++  + +  G    ++IG  +  +      + ++  I   LK  +      
Sbjct: 247 VDTQGVIEEVNPAVSRLFGYSPSELIGRNVSLLMPSNERNMHDEYIQHYLKSADDKTVGK 306

Query: 145 -GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +      +G+   + + ++ + I             G+V         +A  +R +  
Sbjct: 307 GRELLAQKKDGSLFSIELSISKMRIDDE------VLFLGLVKDLSDVKCAQAAAQRTESI 360

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLK----T 256
                E  K           I               +  +    E    + D        
Sbjct: 361 LLATLEGSKDALVTIDTSGAIQEVNDAACLLFKFHSEQMIGQRLEEVLFRADERDCFHNI 420

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
            +    T E  ++           +          +     +     +     S    ++
Sbjct: 421 LEEYRATGEGLAVKHSTQMKATRSDGEKVAIELTLIPVQLGQEMLLTAFIRDISRRMEYE 480

Query: 317 EGENLTPETVDKCPIP 332
               L  E  ++    
Sbjct: 481 TQLKLAKEQAEQGSEA 496


>gi|37519945|ref|NP_923322.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
           7421]
 gi|35210937|dbj|BAC88317.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
           7421]
          Length = 577

 Score =  349 bits (895), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 101/572 (17%), Positives = 195/572 (34%), Gaps = 37/572 (6%)

Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
            L    +  L                   +       G + ++ +     +         
Sbjct: 24  RLTETAWAALVELARQRGISTSDLIEQWARGQFAFPSGPIGDDGEARPVGVGAALAVRPC 83

Query: 313 AYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
               EGE    + ++     FF         Y N     L      + I     +     
Sbjct: 84  DEQAEGE-QVSKILESITDAFFALDEHWCFTYLNRQAERLLSRSREELIGKNIWVE---- 138

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
                          +R+    +           +    + +    +  A          
Sbjct: 139 --FPEALGTTFDREYHRAVERQVRVGFEEFYAPLD----IWLAVRAYPTAKGLAVYFL-- 190

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
               +  + +  ++ +         + +     +     +G     NR   +  G  +E 
Sbjct: 191 ----DIAERKRAEQALLASEQNFRFLADTIPQMVWTTRPDGYHDFFNRRWFEYTGMNLEQ 246

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
                ++  L  +      H     L+      +E        +            L   
Sbjct: 247 TQGWGWSHLLHPHDLDKCLHLWKYSLATGEPYDIEYRFR-RASDGVYRWQLGRALPLRDP 305

Query: 552 SC----YSLTMHDISEWKQEKNKLSH-------AKKIAEKESSHKSDFLARVSHEIRTPL 600
                 +  T  DI + K+ + + +H       A+  AE  +  K +FLA +SHE+RTPL
Sbjct: 306 QGNILRWFGTCTDIDDQKRAEQERTHLLERERQARAEAEAANRAKDEFLAMLSHELRTPL 365

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
             IIG++++++    G L      +    I+R+G L   ++ DLLDIS+I  GK ++   
Sbjct: 366 NPIIGWTQMLRR---GNLTPEMQAKALETIERNGKLQNQLIEDLLDISRIIRGKFSIAPI 422

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP--RILADLRSVKQIALNILSNAIHF 718
           P+ L   +  AI  V+  A +K +L+      +    ++ AD   ++Q+  N+L+NAI F
Sbjct: 423 PIELPPVLHSAIEAVRNLAEQKEVLLDCRCEPSALNRQVSADPTRLQQVIWNLLTNAIKF 482

Query: 719 TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
           TP GG++ +      +  + + VRD G+G+    L    + F Q  +    +  G GLGL
Sbjct: 483 TPKGGRVEVDLA-GDSANLYVAVRDNGMGIAPEFLPYMFERFRQADSRSTRKEGGLGLGL 541

Query: 779 PLAKAMVDANMGKFYIFST-PAKGTLIEIIFP 809
            + + +V+ + G     S    KG +  +  P
Sbjct: 542 FIVRHIVELHGGMVQAESEGEGKGAVFTVELP 573



 Score = 73.1 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/184 (14%), Positives = 47/184 (25%), Gaps = 5/184 (2%)

Query: 54  FTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM 113
           F D  +   +    L SE  F F       +  W     GY    +    +  G    + 
Sbjct: 189 FLDIAERKRAEQALLASEQNFRFLADTIP-QMVWTTRPDGYHDFFNRRWFEYTGMNLEQT 247

Query: 114 IGMRLCDVSDILHIDPNNHIGD-LLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172
            G     +     +D   H+    L     +      +      +Y      ALP+    
Sbjct: 248 QGWGWSHLLHPHDLDKCLHLWKYSLATGEPY-DIEYRFRRASDGVYRWQLGRALPLRDPQ 306

Query: 173 REFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP 232
                 R FG                 L ++        +  +  + E   + S +   P
Sbjct: 307 GNI--LRWFGTCTDIDDQKRAEQERTHLLERERQARAEAEAANRAKDEFLAMLSHELRTP 364

Query: 233 HLRM 236
              +
Sbjct: 365 LNPI 368



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/291 (8%), Positives = 64/291 (21%), Gaps = 22/291 (7%)

Query: 39  SKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEI 98
           +    P  D  E          +V   +               T  F + +D H     +
Sbjct: 57  AFPSGPIGDDGEARPVGVGAALAVRPCDEQAEGEQVSKILESITDAF-FALDEHWCFTYL 115

Query: 99  SEELPKTIGNYAFKMIGMR-LCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNL 157
           + +  + +     ++IG     +  + L    +      ++RQ     +    P++    
Sbjct: 116 NRQAERLLSRSREELIGKNIWVEFPEALGTTFDREYHRAVERQVRVGFEEFYAPLD---- 171

Query: 158 YVPIDLAALPIYSRNREFSGFRGFGI-VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSS 216
            + + + A P           +G  +                  ++ F  L +       
Sbjct: 172 -IWLAVRAYPT---------AKGLAVYFLDIAERKRAEQALLASEQNFRFLADTIPQMVW 221

Query: 217 VEKEKYDIFSQQSPPPH-----LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271
             +                   L            + H  D         L + E    E
Sbjct: 222 TTRPDGYHDFFNRRWFEYTGMNLEQTQGWGWSHLLHPHDLDKCLHLWKYSLATGEPYDIE 281

Query: 272 QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
                  +     +      L++       +             ++     
Sbjct: 282 YRFRRASDGVYRWQLGRALPLRDPQGNILRWFGTCTDIDDQKRAEQERTHL 332


>gi|172058212|ref|YP_001814672.1| multi-sensor signal transduction histidine kinase [Exiguobacterium
           sibiricum 255-15]
 gi|171990733|gb|ACB61655.1| multi-sensor signal transduction histidine kinase [Exiguobacterium
           sibiricum 255-15]
          Length = 577

 Score =  349 bits (895), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 91/362 (25%), Positives = 170/362 (46%), Gaps = 23/362 (6%)

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
           ++  +L S++E    G+ +I+ +G +L  NR   ++F    +   +  + V   +    V
Sbjct: 235 MQRARLESLIEYMGAGLMLIDEKGYVLLVNRTYREMFNIYGQSNGQLYYRVLPNEKMSQV 294

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568
           +            + ++       T       +     K       ++  +DI+E K+ +
Sbjct: 295 IEDVYLTEKPNRKQSSVRFGLNSRTFMVSAAPIF---GKNGRVQGTTVVFNDITEIKKLE 351

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE-YA 627
                           + DF+A VSHE++TPLT+I GF+E + +   G    P   E + 
Sbjct: 352 --------------QMRKDFVANVSHELKTPLTSIKGFAETLLD---GAQDVPEIREQFL 394

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
           N I      +  +V DLL++S++E     L    V +   + E  +L+Q  A EK++ I 
Sbjct: 395 NIIHDESERMQTLVEDLLELSRLEQDNYQLETTIVDVTSLLHETATLLQRKATEKQMTIH 454

Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747
                 +  I ADL  +KQ+ +N+++NA+++TP+GG + IS      E V+LR++D G+G
Sbjct: 455 LETEEEV-FIRADLNRLKQVVVNLVANALNYTPNGGNVWISLE-DGEEAVMLRIKDDGIG 512

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           +   E+++  + F ++  ++     GTGLGL + K ++D + G   + S   +GT   I 
Sbjct: 513 IHPKEMQRIFERFYRVDKARSRNSGGTGLGLAIVKHIIDLHHGTIDVESEENQGTTFTIR 572

Query: 808 FP 809
            P
Sbjct: 573 LP 574


>gi|188579381|ref|YP_001922826.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi
           BJ001]
 gi|179342879|gb|ACB78291.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi
           BJ001]
          Length = 1050

 Score =  349 bits (895), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 111/789 (14%), Positives = 220/789 (27%), Gaps = 55/789 (6%)

Query: 54  FTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM 113
             +     + +    +SE  F         +  W  D HG +   S    +  G    + 
Sbjct: 149 TNETTARVLGDRALRESEEHFRQTVELNP-QVPWTADPHGNIISYSHRWLELTGQAPGEP 207

Query: 114 IGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172
            G           ++P        L   +          I  T  Y      A P     
Sbjct: 208 DGAGWTKALHPEDLEPTMAAFAVALSSGDPV-DIDYRIRIAATGEYRWQRARAHPRRDEA 266

Query: 173 REFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP 232
                 R +G+V          A  +R +++   + E  + H  +  +   I ++ S   
Sbjct: 267 GTII--RWYGVVEDVHDRKIAEAALRRSEEELRLVVESARDHVILTTDTDGIITRWSAGA 324

Query: 233 HLRM---KNKVSSLTEYYAHKDDVLKTEK--YPLLTSEESSLPEQEDFHTINLNQYTK-- 285
              +     +            +          + T+  +     E +H     +     
Sbjct: 325 QAVLGWSPEEAVGKPAVITFTPEDRDRGADLREMATAARNGCAGDERWHVAKDGRRVFLN 384

Query: 286 ----KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGN 340
                                                E       D  P+   FV     
Sbjct: 385 GSSHPLPPDPQGRPRGFLKLARDETGRIRAEEALRASEVQLRLVADALPLLVSFVDRSLT 444

Query: 341 LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400
             +AN ++      K  + +              + +      +               L
Sbjct: 445 YRFANAAYRDWFDRKPEEVVGRT-------IPDLVDEAGLRARLPYIERALAGTPVRTDL 497

Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
               W              + +             +    R  +  +  E  +L    E 
Sbjct: 498 -PWPWPDGRRRIADIRYEPRRDARGAVDGFYVFVQDVTAQRDAEAGLAAERDRL---WEL 553

Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520
           + D +   + EG +L  + + + L G+  E +L +P+   +      V+   L ++ +  
Sbjct: 554 SEDLLVNADYEGHLLRISPSWTILLGHDAETLLTRPYGEIVHPEDFPVVMEALLDMRTTG 613

Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
               +E        +E    +   +   P     +    DI+  K    + +  ++   +
Sbjct: 614 RPVRVENRV--RAADETWRWIAWKLAPEPGGERLTGVGRDITAEKAAAEEKARLEEQLRQ 671

Query: 581 ES--SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
                        ++H+    L  I G  E +   R           Y +    +     
Sbjct: 672 SQKMEAVGQLTGGIAHDFNNLLAGISGSLE-LMQTRMSQGRLKDIDRYMSAAQGASKRAA 730

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
            + + LL  S+    +  L  +P  ++  V     L++       I +    A+ +   L
Sbjct: 731 ALTHRLLAFSR----RQTLDPKPTDVNVLVRGMEELIR-RTVGPAIAVEVVGASGLWPAL 785

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-------------SNEEVILRVRDTG 745
            D   ++   LN+  NA    P  G+I + T +                + + L V DTG
Sbjct: 786 VDPPQLENALLNLCINARDAMPERGRITVETANRWLDEHAARKHDIPPGQYLSLCVTDTG 845

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
            GM+   + KA  PF          G+GTGLGL +       + G+  I+S    GT + 
Sbjct: 846 TGMSPEVVAKAFDPFFTTKP----IGQGTGLGLSMIYGFAKQSGGQVRIYSEVGLGTTVC 901

Query: 806 IIFPLYDTS 814
           +  P Y  +
Sbjct: 902 LYLPRYHGA 910



 Score =  153 bits (387), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 37/503 (7%), Positives = 122/503 (24%), Gaps = 28/503 (5%)

Query: 98  ISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP--IEGT 155
            ++     +G      +G R   V           I D    + +   +   W    +  
Sbjct: 64  FNDTYFPLLGPRLPWAMGERFDVVWADAWSQAKPIIDDAFAGR-SRRFEDMPWKLGTDRG 122

Query: 156 NLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHS 215
                   +   +   +   +G   F   +            +  ++ F    E+     
Sbjct: 123 PADTWFSFSYSRVLDGDGSVAGL--FIFTNETTARVLGDRALRESEEHFRQTVELNPQVP 180

Query: 216 SVEKEKYDIFSQQSPPPHL--RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE 273
                  +I S       L  +   +        A   + L+        +  S  P   
Sbjct: 181 WTADPHGNIISYSHRWLELTGQAPGEPDGAGWTKALHPEDLEPTMAAFAVALSSGDPVDI 240

Query: 274 DFH---TINLNQYTKKQYFGTLQNNSKESFEYLSHR----NHPSLSAYFDEGENLTPETV 326
           D+            ++      ++ +     +        +     A     E      V
Sbjct: 241 DYRIRIAATGEYRWQRARAHPRRDEAGTIIRWYGVVEDVHDRKIAEAALRRSEEELRLVV 300

Query: 327 DKCPIPFFV--YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
           +       +   + G +   +     +  +   + +     ++             ++ +
Sbjct: 301 ESARDHVILTTDTDGIITRWSAGAQAVLGWSPEEAVGKPAVIT--FTPEDRDRGADLREM 358

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
                +         +     +               +          +  ++      +
Sbjct: 359 ATAARNGCAGDERWHVA---KDGRRVFLNGSSHPLPPDPQGRPRGFLKLARDETGRIRAE 415

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
             +    +QL  + +A    ++ ++R       N A    F    E+++ +     +++ 
Sbjct: 416 EALRASEVQLRLVADALPLLVSFVDRSLTYRFANAAYRDWFDRKPEEVVGRTIPDLVDEA 475

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHD 560
                  Y+   L+      +         + +     I  +    +      + + + D
Sbjct: 476 GLRARLPYIERALAG---TPVRTDLPWPWPDGRRRIADIRYEPRRDARGAVDGFYVFVQD 532

Query: 561 ISEWKQEKNKLSHAKKIAEKESS 583
           ++  +  +  L+  +    + S 
Sbjct: 533 VTAQRDAEAGLAAERDRLWELSE 555


>gi|158321803|ref|YP_001514310.1| multi-sensor signal transduction histidine kinase [Alkaliphilus
           oremlandii OhILAs]
 gi|158142002|gb|ABW20314.1| multi-sensor signal transduction histidine kinase [Alkaliphilus
           oremlandii OhILAs]
          Length = 607

 Score =  349 bits (895), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 88/370 (23%), Positives = 165/370 (44%), Gaps = 24/370 (6%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           +++  E  +L +I+   +DGI    +EG IL  N    ++       +  + F    +  
Sbjct: 251 QEVSSEKQKLDTIITYMADGIIAATKEGEILHVNPKAMEMLNIEEGQLAPRNFNEIFKPY 310

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDIS 562
                  YL E+      Q      +   ++  +L                  L + D++
Sbjct: 311 DEEFEMDYLLEMSENQTGQR-----MLYVEDGVILEASYAPFINENGALGGIILLLQDVT 365

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
             ++ +              + + +F+A VSHE++TPLT I  ++E + +          
Sbjct: 366 SAQKLE--------------NMRKEFVANVSHELKTPLTTIKSYTETLLDGVL--ENTEL 409

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
              +   +D     +  +V DLL +S ++  K N + + V+L+E +  +I  + + A  K
Sbjct: 410 ATSFLQVVDGEAERMARLVRDLLQLSNLDYKKSNWNKKEVNLNEIIENSILKIDVSAKNK 469

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
              I T   +    I AD   ++Q+ LNILSN+I +TP GG+II+         V L++R
Sbjct: 470 AQEIITHLQDEPVHIYADKDRIEQVILNILSNSIKYTPEGGRIIVDL-IVDEGVVTLKIR 528

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG+G+   ++ +  + F ++  ++     GTGLGL +AK +++A+ G   IFS    GT
Sbjct: 529 DTGIGIPKEDIARIFERFYRVDKARSREMGGTGLGLSIAKQIIEAHEGTIEIFSEEGHGT 588

Query: 803 LIEIIFPLYD 812
            +    P+ +
Sbjct: 589 EVHTKLPVTE 598


>gi|317483762|ref|ZP_07942704.1| response regulator receiver domain-containing protein [Bilophila
           wadsworthia 3_1_6]
 gi|316924994|gb|EFV46138.1| response regulator receiver domain-containing protein [Bilophila
           wadsworthia 3_1_6]
          Length = 988

 Score =  349 bits (895), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 122/703 (17%), Positives = 237/703 (33%), Gaps = 75/703 (10%)

Query: 166 LPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF 225
            P+ S + E  G R   +V +  ++N  ++  +        +         +  +   + 
Sbjct: 158 APVRS-DGERGGERIGEVVVIIDLENFLQSWKRTA-----SIAPSDGYFHIINAQGKVLA 211

Query: 226 SQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTI------- 278
           S  S  P   M +       +      +    +    +          D+  +       
Sbjct: 212 SWNSEAPPDNMLSPGKQNIFHQPEGQLIRFASRDRHTSLGIWFPIPSTDWRILMAVNENK 271

Query: 279 -NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS 337
                   +    T+   +      L      SL+    E                 +  
Sbjct: 272 ILGPANILRDGTLTISGATGLLLLLLVWVLLSSLTRQIREKNLQLDAISSHLLGGLLITR 331

Query: 338 HGN---LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394
                 + YAN  +L +  Y     +      + +        N  ++ +    S    +
Sbjct: 332 LDRSFTILYANDGYLNMVGYTRSQ-LRKEKRNAAVSLCASEERNATMQAIFSQLSQNGML 390

Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK---------- 444
           +   RL   + +     A+         +  +      I  +  + +  +          
Sbjct: 391 SLEHRLQ--RRDGTRLWALIRGRQVNDPELGQIGVWVII--DVTEQKETQLAFERQSCEL 446

Query: 445 ----RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
               +++     +L  ++++ S  +   + E  ++S N  V ++ G+P   +        
Sbjct: 447 ETLVQQVSASENRLKFLVDSASIPLWSTDLETGLISYNEHVCRMLGWPEGVLHMTLPDFL 506

Query: 501 L--EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI----IIKKLPFSSCY 554
           L    +    + +      + D   TLE              + +     I  L   +  
Sbjct: 507 LRCHPDDVEHVRNVFESFSAEDAGGTLEYEYRVRDGNGNWRWILVKGQKAINPLTHKAER 566

Query: 555 SLTMHDISEWKQ-------------------------EKNKLSHAKKIAEKESSHKSDFL 589
              + D    KQ                            +L  +++ A + +  KS+FL
Sbjct: 567 VGIVIDNHARKQEALDTLQRAAELEAQVQTRTAELAARNAELLKSQQEALEATRAKSEFL 626

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
           A +SHEIRTP+  IIG + +   +           +Y   ID +   +L I+ND+LD SK
Sbjct: 627 ATMSHEIRTPMNGIIGLTYLALQRECPAA----IADYLAKIDVTAKTLLRIINDILDFSK 682

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIA 708
           +ESGKM+    P +L E +   + +      EK + +R      +P+ ++ D   + QI 
Sbjct: 683 VESGKMDFEEIPFTLSEVLDNTLQMFTHAVREKGLSLRFDVGEGVPQSLVGDPTRLGQIL 742

Query: 709 LNILSNAIHFTPSGG-QIIISTTHTSNEEVI--LRVRDTGVGMTNYELEKAMKPFGQIPN 765
           LN++ NA+ FT  G   + +    T  + V     VRDTG+G+   +L    +PF Q   
Sbjct: 743 LNLVGNAMKFTHEGSVTLFVRCVETDQQTVTLGFAVRDTGIGIPADKLPSLFQPFIQADM 802

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           S   R  GTGLGL +A+ +V    G  ++ S   KG+      
Sbjct: 803 SVSRRYGGTGLGLAIARVLVQHMGGTIHVRSVVGKGSTFSFTL 845



 Score = 38.1 bits (87), Expect = 6.1,   Method: Composition-based stats.
 Identities = 26/229 (11%), Positives = 67/229 (29%), Gaps = 19/229 (8%)

Query: 74  FVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS---DILHIDPN 130
           F+ D     +   W+ D    L   +E + + +G     ++ M L D         ++  
Sbjct: 462 FLVDSASIPL---WSTDLETGLISYNEHVCRMLGWPEG-VLHMTLPDFLLRCHPDDVEHV 517

Query: 131 NHIGDLLKRQNTWYGKTTLWPI-EGTNLYVPIDLAAL----PIYSRNREFSGFRGFGIVH 185
            ++ +    ++        + + +G   +  I +       P+  +        G  I +
Sbjct: 518 RNVFESFSAEDAGGTLEYEYRVRDGNGNWRWILVKGQKAINPLTHKAERV----GIVIDN 573

Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE 245
             R       L +  +       + +    +    +  + SQQ      R K++  +   
Sbjct: 574 HARKQEALDTLQRAAE--LEAQVQTRTAELAARNAE-LLKSQQEALEATRAKSEFLATMS 630

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294
           +              L    E      +    I++   T  +    + +
Sbjct: 631 HEIRTPMNGIIGLTYLALQRECPAAIADYLAKIDVTAKTLLRIINDILD 679


>gi|302382337|ref|YP_003818160.1| multi-sensor hybrid histidine kinase [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302192965|gb|ADL00537.1| multi-sensor hybrid histidine kinase [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 915

 Score =  349 bits (895), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 106/586 (18%), Positives = 218/586 (37%), Gaps = 24/586 (4%)

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
              H +D            E     ++    T +  +   +      ++ +         
Sbjct: 199 AQYHPEDQAAGWALAQRARETGEGYDRLMRLTRHGEERVTRTQARVERDETGAVVALFGV 258

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365
               + +A     +    ET+              L  A           S +   I G 
Sbjct: 259 FQDVTEAARATRAQTELVETL-GMAEALAGVGCWRLDVATGRVTW-----SDEVYRIHGK 312

Query: 366 LSTLLDAPKLSD----NNAIKPVMLYRSDRTCIAASARLHTIQ--WNRENSLAMTFIPFE 419
                D          +   +  +    D       A+   ++          +      
Sbjct: 313 TRETFDPSLHDAVSCYHPDDRAAVAASCDEAIRTGDAKEFQLRIVREDGEERIVRSRCRP 372

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
           + +         G+  +  D+  +++++E    +   + +  SD I     +G+I   + 
Sbjct: 373 ERDDAGVTTALFGVFQDVTDSVRSQKRIEASEARYRLLADRASDVIVTYGVDGLIQYISP 432

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKL 538
           +V    G    D++ +P T  +       ++    E++          +         ++
Sbjct: 433 SVEAATGIAPGDLVGRPVTHLILDEDVPALSQRFREMVRAGPGTVQPGVVYRARMASGEI 492

Query: 539 LSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
             +      +       +     + DI+E K+ +++L  A+ +AE  +  KS+FLA +SH
Sbjct: 493 RWMEARTTLIRDDHGRVVQFHDVVRDINETKRLEDELIAARDVAEAAARSKSEFLANMSH 552

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           E+RTPLT++IGFS ++++    P        YA+ I  S   +L ++ND+LD SK+E+  
Sbjct: 553 ELRTPLTSVIGFSGLLQSSEALPAAE---RRYADRIATSSEALLSVINDILDYSKLEADA 609

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILS 713
           + L               S+V+     K + +  + A+++P  I+ D   ++Q+ LN LS
Sbjct: 610 VGLDPVAFDPTAMARATASIVETQCEAKGLSLVITTADDLPGAIMGDEGRLRQVTLNFLS 669

Query: 714 NAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
           NA+ FT +G +I +         + + V D+G+G+   +++   + F Q   S      G
Sbjct: 670 NAVKFTNTG-EIRLDVGSVD-GRMRVAVTDSGIGVAADKIDALFERFTQADASTTRVYGG 727

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819
           TGLGL + + +++   G+    S P  G+      P+   + P D 
Sbjct: 728 TGLGLAICRRLIEMMGGEIGATSRPGHGSTFWFEVPMI-AAEPLDA 772



 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/385 (7%), Positives = 81/385 (21%), Gaps = 18/385 (4%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD--LLKRQNTWYGKTTL 149
            G ++ IS  +    G     ++G  +  +     +   +      +     T       
Sbjct: 424 DGLIQYISPSVEAATGIAPGDLVGRPVTHLILDEDVPALSQRFREMVRAGPGTVQPGVVY 483

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
                +     ++     I   +     F    +V                         
Sbjct: 484 RARMASGEIRWMEARTTLIRDDHGRVVQFH--DVVRDINETKRLEDELIAARDVAEAAAR 541

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
            K    +    +              +++  +       + D +  + +  L    +   
Sbjct: 542 SKSEFLANMSHELRTPLTSVIGFSGLLQSSEALPAAERRYADRIATSSEALLSVINDILD 601

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFE-------YLSHRNHPSLSAYFDEGENLT 322
             + +   + L+              S    +        +         A   +   L 
Sbjct: 602 YSKLEADAVGLDPVAFDPTAMARATASIVETQCEAKGLSLVITTADDLPGAIMGDEGRLR 661

Query: 323 PETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGG--LSTLLDAPKLSDNNA 380
             T++         + G +     S     +    D         +  L +    +D + 
Sbjct: 662 QVTLNFLSNAVKFTNTGEIRLDVGSVDGRMRVAVTDSGIGVAADKIDALFERFTQADAST 721

Query: 381 IKP-----VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
            +      + L    R        +         S     +P   A      +       
Sbjct: 722 TRVYGGTGLGLAICRRLIEMMGGEIGATSRPGHGSTFWFEVPMIAAEPLDAMVEDAVEGL 781

Query: 436 EDVDTRINKRKMEIEVMQLCSILEA 460
            +    +           +  +L+A
Sbjct: 782 PEGLRVLMADDAPANRELVRVLLDA 806


>gi|167037241|ref|YP_001664819.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|320115660|ref|YP_004185819.1| PAS sensor protein [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|166856075|gb|ABY94483.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|319928751|gb|ADV79436.1| PAS sensor protein [Thermoanaerobacter brockii subsp. finnii Ako-1]
          Length = 456

 Score =  348 bits (894), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 85/370 (22%), Positives = 174/370 (47%), Gaps = 24/370 (6%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +    ++     +L +IL++  +G+   +    IL  N A  K+     +D++ +     
Sbjct: 101 KETIEELNDRNAKLEAILKSIVNGVIAFDNNEKILLINDAARKILNIKEKDLIGRHILEI 160

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-CYSLTMH 559
           +     S ++ +  ++       +         K  K+ +   I+  +   +  + L + 
Sbjct: 161 VR---NSKLHDFFEDVKKNKNSPSKSLELNVFNKHLKVYT-SPILHPISHQNLGFVLIID 216

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           DI+E ++ +                +S+F+A VSHE+RTPLT+I GF E +   R G + 
Sbjct: 217 DITEMRRLE--------------KIRSEFVANVSHELRTPLTSIRGFIETL---RNGAID 259

Query: 620 NPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
           NP+  + + + ID     +  ++ND+L +S+IE+ K     E + LD  + + + ++   
Sbjct: 260 NPQARDKFLDIIDFESERLTRLINDILTLSEIENVKEGYPKEEIELDNEIEDILYIMDKV 319

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738
           A  K I ++         I  +     Q+ +N++ N I +TP GG + +ST     +++I
Sbjct: 320 ARNKNITLKKDLNCTDLVIKTNKDRFHQMMINLIDNGIKYTPEGGFVKVSTR-EEGDKII 378

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           + V D G+G++   + +  + F ++  S+  +  GTGLGL + K +V++  G+ ++ S  
Sbjct: 379 VTVEDNGIGISKENIPRLFERFYRVDKSRSRKLGGTGLGLAIVKHIVESMKGEIFVESEV 438

Query: 799 AKGTLIEIIF 808
            +GT   I F
Sbjct: 439 GRGTKFIIKF 448


>gi|303248550|ref|ZP_07334807.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           fructosovorans JJ]
 gi|302490080|gb|EFL50001.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           fructosovorans JJ]
          Length = 695

 Score =  348 bits (894), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 101/679 (14%), Positives = 216/679 (31%), Gaps = 78/679 (11%)

Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253
            A           + +     +++ +    +  Q        + +    L       D+ 
Sbjct: 20  LAALWEAAGDIVVVIDAVGRLAAINESGLRLLGQTR---EQAVGSDWFDLALPPKDNDNA 76

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL-- 311
               +  L          Q       L     +   G +     +    L+         
Sbjct: 77  RILHRALLDGELSPKDLTQNQTIRTALGWRRLRWGLGLIDGPDGQPAMVLACGRDVDAQS 136

Query: 312 --SAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
              A   E E    + +D      F+     G +  AN   + L  Y   +       L 
Sbjct: 137 QLEAAVREKEAEYRDILDAANDAIFIQDPATGQILDANERAVSLYGYGVDE-------LR 189

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
            +      +                      +L       +           +       
Sbjct: 190 RITPDGLSAGTPPHTGAAALAKLDQARRGQPQLFEWLARDKTGRLFWTEVNLRHAVVRGQ 249

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFG 486
                +  +  + +  +R +     +   + E   +   + + +   I   + A   L+G
Sbjct: 250 DRIIAVVRDITERKNAERALRESEKKFRQLAETIGEVFWLASPDVKRIFYVSPAYETLWG 309

Query: 487 YPVEDILRKPFTVF--LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
            P   +   P +    +       +  ++T + S    + +         +  +  ++  
Sbjct: 310 RPPVSLYASPQSWLDSVHPEDRDKVLDHMTRLASGPPARGIFPDFRVVRDDGSVRWVQAR 369

Query: 545 IKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD------------- 587
              +   S      + T+ DI++  Q + +L    +  E     ++              
Sbjct: 370 YFPVIGDSGGVSRLAGTLEDITDRVQTRLELERVNERLEDMVRKRTQTLNRMNEELIHEV 429

Query: 588 --------------------------FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
                                     FLA +SHEIRTP+  I+G ++++         + 
Sbjct: 430 LERREAEASMARAKEAAEAASRAKSAFLANISHEIRTPMNGILGMAQILGQTGL----SD 485

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
              E+   I+ S + +L ++NDLLD S+IE+ ++ L  E   L   ++   + +   A E
Sbjct: 486 DQKEFLKDIEGSASSLLALINDLLDFSRIEAERVELAHEAFGLRAVLASVEAAMGAPARE 545

Query: 682 KRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII----ISTTHTSNE- 735
           K + +    + ++P  +L D   ++Q+  N++ NAI FT  GG ++    +     +   
Sbjct: 546 KGLELSVDISPDVPDMLLGDADRLRQVLTNLVGNAIKFTDHGGVVVQAQCVEACRPAEAI 605

Query: 736 ------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
                 E++  V DTG+G+   +  +  + F Q   S   R  GTGLGL + + +V    
Sbjct: 606 TRGMRQELLFSVSDTGIGILPEDTSRIFEAFTQADGSYTRRFGGTGLGLAITRRLVALMG 665

Query: 790 GKFYIFSTPAKGTLIEIIF 808
           G+  + S P +G++     
Sbjct: 666 GELGVDSVPDQGSVFTFSL 684



 Score = 94.3 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 43/383 (11%), Positives = 106/383 (27%), Gaps = 18/383 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI--GDLLKRQNTWYGK 146
           IDA G L  I+E   + +G    + +G    D++     + N  I    LL  + +    
Sbjct: 34  IDAVGRLAAINESGLRLLGQTREQAVGSDWFDLALPPKDNDNARILHRALLDGELSPKDL 93

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
           T    I     +  +      I   + + +     G        +   A  +  + ++  
Sbjct: 94  TQNQTIRTALGWRRLRWGLGLIDGPDGQPAMVLACG--RDVDAQSQLEAAVREKEAEYRD 151

Query: 207 LHEIKKGHSSVEKEK-YDIFSQQSPPPHL--RMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
           + +       ++      I         L     +++  +T           T    L  
Sbjct: 152 ILDAANDAIFIQDPATGQILDANERAVSLYGYGVDELRRITPDGLSAGTPPHTGAAALAK 211

Query: 264 SEESSLPEQEDFHTIN----LNQYTKK--QYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
            +++   + + F  +        +  +       ++   +            +      E
Sbjct: 212 LDQARRGQPQLFEWLARDKTGRLFWTEVNLRHAVVRGQDRIIAVVRDITERKNAERALRE 271

Query: 318 GENLTPETVDKCPIPFFVYSHG--NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
            E    +  +     F++ S     +FY +P++  L     V            LD+   
Sbjct: 272 SEKKFRQLAETIGEVFWLASPDVKRIFYVSPAYETLWGRPPVSLYASPQSW---LDSVHP 328

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
            D + +   M   +             +  +  +   +    F             G   
Sbjct: 329 EDRDKVLDHMTRLASGPPARGIFPDFRVVRDDGSVRWVQARYFPVIGDSGGVSRLAGTLE 388

Query: 436 EDVDTRINKRKMEIEVMQLCSIL 458
           +  D    + ++E    +L  ++
Sbjct: 389 DITDRVQTRLELERVNERLEDMV 411


>gi|20091382|ref|NP_617457.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
 gi|19916518|gb|AAM05937.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
          Length = 740

 Score =  348 bits (894), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 99/371 (26%), Positives = 188/371 (50%), Gaps = 9/371 (2%)

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
           + +++++ +  +   +L++ ++ +  ++ E  I+  N+A  +     +E  +        
Sbjct: 351 LAEQELKAQAREKKVLLDSLNELVVFVSPELKIIWANKAALEYMNMDLESAMGVCLKATP 410

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMH 559
             + P V   YL  I + + +++ E     + K+ K+   +                T  
Sbjct: 411 GISGPLVEFMYLEHIFTSEEKKSGEF----TAKDGKVWFFQATPVTDDQGKIIGVLQTCR 466

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           D++E K+ +  L   K++AE  +  KS+FLA +SHE+RTPL +IIGFS+++  + +G L 
Sbjct: 467 DVTERKEAEK-LLQEKQVAEVANRTKSEFLANMSHELRTPLNSIIGFSDLLYEKIYGDL- 524

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
           N + ++    I RSG  +L+++ND+LD+SK+E+GK+ L ++   L   ++   +L+   A
Sbjct: 525 NEKQLKAVGNISRSGKHLLNLINDILDLSKVEAGKLELEYKEFELSSKLNSIKNLLSPIA 584

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
           + K I ++     ++  I AD     QI  N+L NAI F+   G + I       + V +
Sbjct: 585 DRKMIEVQIQVDESLNTIRADEARFAQIMYNLLDNAIKFSKENGLVEID-AKRKGDTVEI 643

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V+D G+G+   +  K  KPF QI +    + +GTGLGL L K +V+ + G  +  S   
Sbjct: 644 TVKDYGIGIKVEDQSKLFKPFSQIASFSSKKVQGTGLGLALVKQIVNLHGGYIWFNSRIG 703

Query: 800 KGTLIEIIFPL 810
           +G+      P+
Sbjct: 704 EGSTFAFTIPI 714


>gi|312886915|ref|ZP_07746520.1| PAS/PAC sensor hybrid histidine kinase [Mucilaginibacter paludis
           DSM 18603]
 gi|311300599|gb|EFQ77663.1| PAS/PAC sensor hybrid histidine kinase [Mucilaginibacter paludis
           DSM 18603]
          Length = 766

 Score =  348 bits (894), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 106/585 (18%), Positives = 209/585 (35%), Gaps = 33/585 (5%)

Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY-----LS 304
                      + +  E     +  F   N +           +  ++   EY     ++
Sbjct: 59  LRQFRIIFARHVQSGGEIPFAHEIRFRHKNGSTVFILLTGKVQKFTAEGKPEYMLGNHIN 118

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIA 363
                          +    T +   +  +           +     +       D E A
Sbjct: 119 LTAQKLAEKELKRTRDFLERTSEVAMVGGWELDMLHQKVTWSAVTRQIFGVDK--DFEPA 176

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
            G S          N  ++      +          L  I      +L  T        +
Sbjct: 177 TGTSAFFFREGKDRNLLLEAFHKAITTGE--PYDLELQIITATG--ALKWTRTVGHPEFE 232

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
             + +   GI  +    +  +  +  +  QL + ++ +   IA++++    ++ +     
Sbjct: 233 DGKCIRIYGIFQDITIRKTQEEALRQKQEQLETFIKYSPVAIAMMDKHFNYVAVSDVWVS 292

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
            +   +  +L +          P +   YL+  L  ++ +  E          + L   +
Sbjct: 293 CYNLDMPTLLGRSHFEVF-PELPGIWMSYLSRCLRGEVIKKEEDSFFLINGRREWLRWEV 351

Query: 544 IIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
                         +    I+E KQ +  L  AK+ AE+ +  KS FL+ +SHEIRTP+ 
Sbjct: 352 RPWYESAGTVGGIIMFTELITEKKQIQEALIKAKEDAEQAALIKSRFLSIMSHEIRTPMN 411

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
            +IGF+ ++              E  N +  S   ++ I+ND+L+++KI++GK+ L    
Sbjct: 412 GVIGFTNLLLKNP-----REDQREALNVLKFSAQNLMVIINDVLNLNKIDAGKVELENIS 466

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTP 720
             L E +       +  A EK + +   F  ++P     D   + Q+  N+++NAI FT 
Sbjct: 467 FDLYELLQNICRSQENDAKEKHLNLSVQFDYSLPFWFKGDPVRIGQVITNLVNNAIKFTA 526

Query: 721 SGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
           +G ++ IST      E    +   V DTG+G+   + E   + F Q  +       GTGL
Sbjct: 527 AG-RVSISTALVGEHEGKMTIGFAVSDTGIGIPETKQEHIFELFSQAESDTTRIYGGTGL 585

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEI-------IFPLYDTS 814
           GL + K +++       + STP +G++            P+ +TS
Sbjct: 586 GLTITKRLLELMGSNIQLKSTPGEGSIFYFDLELEKSTLPVEETS 630


>gi|322419402|ref|YP_004198625.1| multi-sensor signal transduction histidine kinase [Geobacter sp.
           M18]
 gi|320125789|gb|ADW13349.1| multi-sensor signal transduction histidine kinase [Geobacter sp.
           M18]
          Length = 771

 Score =  348 bits (894), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 128/706 (18%), Positives = 249/706 (35%), Gaps = 50/706 (7%)

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
           G    V   L A P  S   E     G  +   +                    HE  + 
Sbjct: 67  GRAQEVINTLRANPQISEA-EIFLRDGRLLARYSSRSKTALLTPSLKPDGLYLNHESAEL 125

Query: 214 HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE 273
             S++   +          + + +N +             +       L      +    
Sbjct: 126 TQSLQDGAHLRLVMTLDEFNRQTRNVLWGFAAGVFVLLVTITLGLRAALQKII--ISPVS 183

Query: 274 DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP------ETVD 327
                     T+  Y   +  +  +    L    +  +    +  ++L          +D
Sbjct: 184 TLVETVEQVRTRADYSRRVPASGVDEVARLGQSFNAMMEVIKEREDDLHRLTLFQRTILD 243

Query: 328 KCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIE----------IAGGLSTLLDAPKLS 376
                     + G +   N +   L  Y + + I                  L  + +L 
Sbjct: 244 NAAYGIISTTTEGIVSSFNRAAECLLGYTAGEVIGKLTPVCWHDQEEISRRALQLSEELG 303

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           +  A    +     R  +A       I+ +    + +         +  +     G+  +
Sbjct: 304 ETVAPGFEVFAVRLRRNLAEENEWTYIRKDGTR-VPVLLSVTALRGESDQVTGFVGLTYD 362

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             + +  +  +     +  ++       I  ++ +G IL+ N   +   GY +E+++ + 
Sbjct: 363 LTERKRVEEALRFSEARYRALHRDNPTMIFTLDAQGTILTVNTFGAIQLGYAMEELVGES 422

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--- 553
               L     +     L   +         +      K+ +LL +  + + +   +    
Sbjct: 423 VLKVLHSEDHNAAFEQLRLCVQHPT-SVYRRHFRKIRKDGELLWVDEVAQAVNDLNGSLN 481

Query: 554 YSLTMHDISEWKQEKNKLSHAKK------------------IAEKESSHKSDFLARVSHE 595
             +   DI+E K+ + +L+  K                     ++    KS F+A  SHE
Sbjct: 482 ILVVCLDITERKKAEEELNRYKTHLETLVQERTAELERANVRLQELDRLKSMFIAATSHE 541

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           +RTPL AIIGF+ +      G L N    +    + RS   +L ++ D++DISKIE+GK+
Sbjct: 542 LRTPLNAIIGFTGMTLQGLSGEL-NEEQQDNLARVYRSAKHLLALITDIIDISKIEAGKI 600

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715
           ++  E   L+E V EAI++V      K + +       +  + AD + + Q  +N+LSNA
Sbjct: 601 SIFPEEFPLEELVDEAIAIVTPQLKGKSLSLERELPAAL-TVYADRKRLLQCLVNLLSNA 659

Query: 716 IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
             FT  G +II+     S   + L V+D+G+G+   +L +  KPF ++ +  +++  GTG
Sbjct: 660 AKFTEKG-RIIV-AARESEGSIELSVKDSGIGIAPQDLPRLFKPFERLESHLRVQAGGTG 717

Query: 776 LGLPLAKAMV-DANMGKFYIFSTPAKGTLIEIIFP--LYDTSHPHD 818
           LGL L   +V D   G   + S   +G+   +  P  L     P D
Sbjct: 718 LGLYLTAKLVADVLRGTISVQSREGEGSTFTLSLPRDLRRVPEPPD 763



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/287 (13%), Positives = 79/287 (27%), Gaps = 31/287 (10%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIG--------------MRLCDVSDILHIDPNN---HIG 134
            G +   +      +G  A ++IG               R   +S+ L            
Sbjct: 255 EGIVSSFNRAAECLLGYTAGEVIGKLTPVCWHDQEEISRRALQLSEELGETVAPGFEVFA 314

Query: 135 DLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR 194
             L+R      + T    +GT   VP+ L+   +   + + +GF   G+ +         
Sbjct: 315 VRLRRNLAEENEWTYIRKDGT--RVPVLLSVTALRGESDQVTGF--VGLTYDLTERKRVE 370

Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP---HLRMKNKVSSLTEYYAHKD 251
              +  + ++  LH            +  I +  +         M+  V        H +
Sbjct: 371 EALRFSEARYRALHRDNPTMIFTLDAQGTILTVNTFGAIQLGYAMEELVGESVLKVLHSE 430

Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTI--NLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
           D     +   L  +  +   +  F  I  +       +    + + +      L      
Sbjct: 431 DHNAAFEQLRLCVQHPTSVYRRHFRKIRKDGELLWVDEVAQAVNDLNGSLN-ILVVCLDI 489

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKS 356
           +     +E  N     ++             L  AN     L + KS
Sbjct: 490 TERKKAEEELNRYKTHLETLVQ----ERTAELERANVRLQELDRLKS 532



 Score = 45.4 bits (106), Expect = 0.041,   Method: Composition-based stats.
 Identities = 24/241 (9%), Positives = 61/241 (25%), Gaps = 11/241 (4%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + +DA G +  ++      +G    +++G  +  V      +       L  +  T   
Sbjct: 391 IFTLDAQGTILTVNTFGAIQLGYAMEELVGESVLKVLHSEDHNAAFEQLRLCVQHPTSVY 450

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +     I      + +D  A  +   N          +               R      
Sbjct: 451 RRHFRKIRKDGELLWVDEVAQAVNDLNGSL---NILVVCLDITERKKAEEELNRYKTHLE 507

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
            L  +++  + +E+    +          R+K+   + T +              +    
Sbjct: 508 TL--VQERTAELERANVRLQELD------RLKSMFIAATSHELRTPLNAIIGFTGMTLQG 559

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
            S    +E    +     + K     + +    S       +        +E  +     
Sbjct: 560 LSGELNEEQQDNLARVYRSAKHLLALITDIIDISKIEAGKISIFPEEFPLEELVDEAIAI 619

Query: 326 V 326
           V
Sbjct: 620 V 620


>gi|295399014|ref|ZP_06808996.1| multi-sensor signal transduction histidine kinase [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294978480|gb|EFG54076.1| multi-sensor signal transduction histidine kinase [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 595

 Score =  348 bits (894), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 94/364 (25%), Positives = 158/364 (43%), Gaps = 24/364 (6%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            +  E  QL SIL + +DG+   NR+G IL TN    +          +      +    
Sbjct: 250 ALNQEKEQLASILSSMADGVITFNRDGEILITNPPAERFLQ--AWYFEQGNDAEIIAP-L 306

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
           P  +N     ++  +  Q++E    G T     + L   +            + D++E +
Sbjct: 307 PPQVNELFIRVVREEKEQSIELSLQGRT----WVILMTPLYDKTNVRGAVAVLRDMTEER 362

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           +                  + DF+A VSHE+RTP+  + G+SE I +       +    E
Sbjct: 363 RL--------------DKLRKDFIANVSHELRTPIAMLQGYSEAIIDDI--AATDEEKKE 406

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
            A  I      +  +VNDLLD++++E+G + L++E V L   +   I   Q  A EK+I 
Sbjct: 407 MAKVIYDESLRMGRLVNDLLDLARMEAGHITLNYETVQLAPYIGRIIRKFQGLAKEKQID 466

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +   F N   RI  D   ++Q+  N++ NAI  T   G + I     +   V + V+D+G
Sbjct: 467 LSAEFDNEDIRIRMDPDRIEQVLTNLIDNAIRHTDQNGTVKI-IAEQNGGGVTIHVQDSG 525

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
            G+   +L    + F +   ++     GTGLGL +AK +V+A+ G   + S   +GT   
Sbjct: 526 TGIPEEDLPFVFERFYKADKARTRGRSGTGLGLAIAKNIVEAHKGTISVHSKLHEGTTFT 585

Query: 806 IIFP 809
              P
Sbjct: 586 FHLP 589


>gi|292492033|ref|YP_003527472.1| PAS sensor protein [Nitrosococcus halophilus Nc4]
 gi|291580628|gb|ADE15085.1| PAS sensor protein [Nitrosococcus halophilus Nc4]
          Length = 788

 Score =  348 bits (894), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 110/586 (18%), Positives = 222/586 (37%), Gaps = 30/586 (5%)

Query: 235 RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294
           R+     +L   +    D +         ++E  +  +      + + +       T  +
Sbjct: 60  RIHRLEEALKFVHPQDQDKVLATTQAAKQAKER-VEIRFRCRWPDGSIHWLLARGKTFYH 118

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-----FVYSHGNLFYANPSFL 349
            S   +         +     +E    + E + +          ++       Y +  + 
Sbjct: 119 PSGAPWFVAGTCQEITQLVKAEEALRRSEEMLQRVTDAASVLISYLDRKLRFQYVSSGYE 178

Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
              + + ++DI+       L      +   A++  +        +  +  L   +     
Sbjct: 179 KRFQ-RPLEDIQGRYMWEIL----GKNAFAAVEEYVQRALKGEVVVYNKELPYDEIGPRY 233

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469
                             +  + I  +  ++R    K+     QL +I+E+++D I   +
Sbjct: 234 VHVQYIPDITD----GHVLGFSAITIDLTESR----KLSERAAQLSAIVESSTDAILSQD 285

Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
             GII S N+    LFGY  E+++ +P    +  +           I   +        T
Sbjct: 286 LNGIIQSWNQGAEHLFGYKAEEMIGQPIAPLIPSHRKKEEIQMRKRIKRGERVAPY--ET 343

Query: 530 LGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHK 585
           +   K+   +++ + I  L  S    +       DI+E+K ++ +L    ++  +    K
Sbjct: 344 VRLHKDGSEVTISLTISPLQDSQGRLIGASKIARDITEYKHQQEQLRRQAELLTETDRRK 403

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
            +FLA ++HE+R PL  I    +++K     P    +     +  +R    ++ +V DLL
Sbjct: 404 DEFLATLAHELRNPLAPIANSLQILKQVGNNPEALEKA---VSISERQLQHLVHLVEDLL 460

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
           D+S+I  GK+ L  EPV+LD  +  A+ + + +       +          + ADL  + 
Sbjct: 461 DVSRITRGKIQLRKEPVTLDTIIKSALEISRSHIKAGEHTLCVEVPETQVLLQADLTRLA 520

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           Q   N+L NA  +TP GG I ++     N++V++ V+D G+G+    L +    F Q   
Sbjct: 521 QAVSNLLINAAKYTPPGGHIKLTARCE-NQQVVIAVQDDGIGIAQELLPRIFDMFVQAER 579

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFPL 810
                  G G+GLPL K +V+ + G+    S    +G    I  PL
Sbjct: 580 PGGYAPGGLGIGLPLVKGLVELHGGQAEAASPGLDQGCTFTIRLPL 625



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/247 (10%), Positives = 66/247 (26%), Gaps = 12/247 (4%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY-GKTT 148
           D +G ++  ++      G  A +MIG  +  +           +   +KR       +T 
Sbjct: 285 DLNGIIQSWNQGAEHLFGYKAEEMIGQPIAPLIPSHRKKEEIQMRKRIKRGERVAPYETV 344

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +G+ + + + ++  P+        G     I          +   +R  +  +   
Sbjct: 345 RLHKDGSEVTISLTIS--PLQDSQGRLIGASK--IARDITEYKHQQEQLRRQAELLTETD 400

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
             K    +    +            L++  +V +  E       + + +   L+   E  
Sbjct: 401 RRKDEFLATLAHELRN-PLAPIANSLQILKQVGNNPEALEKAVSISERQLQHLVHLVEDL 459

Query: 269 LPEQEDFH---TINLNQYTKKQYFGTLQNNSKE---SFEYLSHRNHPSLSAYFDEGENLT 322
           L           +     T      +    S+    + E+      P             
Sbjct: 460 LDVSRITRGKIQLRKEPVTLDTIIKSALEISRSHIKAGEHTLCVEVPETQVLLQADLTRL 519

Query: 323 PETVDKC 329
            + V   
Sbjct: 520 AQAVSNL 526



 Score = 41.2 bits (95), Expect = 0.67,   Method: Composition-based stats.
 Identities = 26/242 (10%), Positives = 69/242 (28%), Gaps = 13/242 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTWYGKT 147
           +D     + +S    K        + G  + ++            +   LK +   Y K 
Sbjct: 164 LDRKLRFQYVSSGYEKRFQRPLEDIQGRYMWEILGKNAFAAVEEYVQRALKGEVVVYNKE 223

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI-VHVNRVDNDPRALGKRLDKKFSH 206
             +   G      + +  +P  + +    GF    I +  +R  ++  A    + +  + 
Sbjct: 224 LPYDEIGPRY---VHVQYIPDIT-DGHVLGFSAITIDLTESRKLSERAAQLSAIVESSTD 279

Query: 207 --LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
             L +   G      +  +          +     ++ L   +  K+++   ++      
Sbjct: 280 AILSQDLNGIIQSWNQGAEHLFGYKAEEMIGQP--IAPLIPSHRKKEEIQMRKRIKR--- 334

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
            E   P +      + ++ T       LQ++              +   +  E      E
Sbjct: 335 GERVAPYETVRLHKDGSEVTISLTISPLQDSQGRLIGASKIARDITEYKHQQEQLRRQAE 394

Query: 325 TV 326
            +
Sbjct: 395 LL 396



 Score = 40.4 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/154 (11%), Positives = 52/154 (33%), Gaps = 8/154 (5%)

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK--PFTVFLEQNTPS 507
           +     +   A+  G+   + +   +  +  + +LFG P    + +      F+      
Sbjct: 18  QGEDYRTAFAASEIGVFRWHFQSDRMEWDETLYQLFGIPKGQRIHRLEEALKFVHPQDQD 77

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISE 563
            +            R  +E        +  +  L    K     S      + T  +I++
Sbjct: 78  KVLATTQAAKQAKER--VEIRFRCRWPDGSIHWLLARGKTFYHPSGAPWFVAGTCQEITQ 135

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
             + +  L  ++++ ++ +   S  ++ +  ++R
Sbjct: 136 LVKAEEALRRSEEMLQRVTDAASVLISYLDRKLR 169


>gi|89070245|ref|ZP_01157569.1| PAS/PAC Sensor Hybrid Histidine Kinase [Oceanicola granulosus
           HTCC2516]
 gi|89044165|gb|EAR50323.1| PAS/PAC Sensor Hybrid Histidine Kinase [Oceanicola granulosus
           HTCC2516]
          Length = 1053

 Score =  348 bits (894), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 126/777 (16%), Positives = 271/777 (34%), Gaps = 46/777 (5%)

Query: 52  SNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAF 111
                 +    +    L +   +   P          +D    ++EI +E          
Sbjct: 192 RPRYSLDAPVDTPEERLAALRGWNLGP----------LDPQVLVQEIEDEFAGAFRVRID 241

Query: 112 KMIGMRLCDVSDILHIDPNNHIGDLL--KRQN---TWYGKTTLWPIEGTNLYVPIDLAAL 166
                     + +  + P+  + +++    +N   TW    T   +   +    + +A +
Sbjct: 242 DAGARTRLADTTLPDVQPDFRLTEVVPVLGRNWAFTWESTPTFEAMNARSTPWIVLVAGV 301

Query: 167 PIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFS 226
            + +     +G      + V R+  +     +   +      + +     +      + S
Sbjct: 302 AVTALVAALAGVLARREIAVRRLVEERTRELEARAEMNRSFLDNRVVAMLIVDADGSVLS 361

Query: 227 QQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKK 286
                        VS L     +              S    +        +++      
Sbjct: 362 GNQAA-ARLFGYAVSDLKGVLLNNLIPGAIASIDWTLSTTQGVHRDGSTLYLDVQVNRW- 419

Query: 287 QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYAN 345
                  +N++ +            S   DE E      +++  I  F +    ++   +
Sbjct: 420 ---TNAGDNARSTVLIRDVSEQTRTSRQLDEQEERFNRAINEAGIGVFDIDLESDVSVVS 476

Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405
            S+L +    +   +E       L       ++  I     Y         +   + +++
Sbjct: 477 NSWLRVMGLPADVTLENPQ---ALFRERVHPEDRPIIEAANYAHIDGHTDRTVTEYRVRF 533

Query: 406 NRENSLAMTFIPF-EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
           +      M       + ++    +   G++ +  D    +  +     +    L     G
Sbjct: 534 DDGTWRWMRSNAVVTERDEDGRALRLLGVQTDVTDRHEAQDALRRSEERFRKFLAQAPVG 593

Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
           +AI + +G  L  N A+ KL GY   ++L   F   L ++  + +   + E       + 
Sbjct: 594 MAIFDGQGRFLGLNEAMVKLTGYSEAELLEMRFGDLLSKDDLAQIFDTVVETHGDG-ARG 652

Query: 525 LEKITLGSTKEEKLLS----LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
                  S +    +     +         S  Y + + DISE ++ +            
Sbjct: 653 YTGEHQLSHRNGGHVWALLSVAWTFDADRGSDLYIVQLQDISERREIE------------ 700

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
               KS+F+A VSHE+RTPLT++ G  +++       L         +    + + ++ +
Sbjct: 701 --RLKSEFVATVSHELRTPLTSVKGALDLVVGAMADKLPKSSLR-LLDIAQSNTDRLIYL 757

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILAD 700
           VND+LD+ KI +G+++ H +P S +E +  ++   +  A ++ + +          +LAD
Sbjct: 758 VNDILDLEKISAGQIDFHIQPESANELLDASVKQTRPIAVQQDVHLVWRPQEPDRMVLAD 817

Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760
              + Q+ LN++SNA  F+ +GG++ +        EV+  V+D GVG++        KPF
Sbjct: 818 AGRLNQVLLNLISNACKFSHAGGRVEVWFEVR-GAEVMFFVKDEGVGISATHRNSIFKPF 876

Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
            Q+ +S      GTGLGL + K +V+   G+    ST  +GT      PL + +   
Sbjct: 877 SQVDSSDTREKGGTGLGLNICKELVERMNGRIDFESTLGEGTTFRFTCPLAEPADAE 933


>gi|144900213|emb|CAM77077.1| Signal transduction histidine kinase [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 1183

 Score =  348 bits (894), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 118/660 (17%), Positives = 221/660 (33%), Gaps = 43/660 (6%)

Query: 166 LPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF 225
           LP     R      G  +V  N + +      +R  ++   L  +     ++        
Sbjct: 129 LPQLQELRTLMVSIGDNVVGRNALVDRRLQQTERSRQQGLDLANLDNAVRTLL---ARKG 185

Query: 226 SQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTK 285
           +        +  + +                 +Y  ++   + + +        L    +
Sbjct: 186 TDADLAVVAQASDLLRQAHVSRDMDGLGEMRRRYETVSRRLAEMIDDPRITDSALRDAAR 245

Query: 286 KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYAN 345
                     +              L A  +EG +L   T               +    
Sbjct: 246 TAITLGSGPENVFELRTRGLMTDVRLIAANEEGRDLVARTSSVVGRIVSETEAAAIANER 305

Query: 346 PSFLLLT-------KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398
            +   LT           V  +     +   L    ++    +   M    +        
Sbjct: 306 RAGAALTTGRQVMMGIAVVTVLGPLLFVWMYLGRNIVNRLAGLASAMHRIVEGD------ 359

Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458
                                              +      + +   ++    +L +IL
Sbjct: 360 ------------YHTKVEASGNDEIADMAGELVVFQRALAQLQDSTDALKESEGRLRTIL 407

Query: 459 EATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFLE-QNTPSVMNHYLTEI 516
           + +   +AI    +  IL  N   S+LFG   +D        F         +   +   
Sbjct: 408 DTSPLALAISRVSDNAILYVNPRWSELFGSRPDDSNGVDAASFYADPADRDRVVELVR-- 465

Query: 517 LSLDLRQTLEKITLGSTKEEKLLS--LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA 574
                    +  +     +       +      +       ++  DI++ K++++ L+ A
Sbjct: 466 ---GQGYLADYESRMRRADGSEFWAMMSAAAIDMDGEPAVCVSTADITKRKEQEDALAEA 522

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
           K+ AE  S  KS FLA +SHEIRTP+  ++  ++++++            E A  I  S 
Sbjct: 523 KQTAEDASQAKSLFLATMSHEIRTPMNGVLTMAQLLEDMPLA----QEQKEMARVIRDSA 578

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
             +L I+ND+LD SKIESGK+ L    +SL + +     L+   A+EK I + T     +
Sbjct: 579 TALLTIINDILDFSKIESGKLELEIIEMSLSDVIESVAELLAPRASEKGIGLMTFIDPAL 638

Query: 695 PRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753
           P + L D   ++QI  N+  NA+ FT  G  + IS    ++  V   + DTG+G+ + + 
Sbjct: 639 PDLFLGDATRLRQIVTNLAGNAVKFTDKG-YVRISAEAAADGHVRFTISDTGIGLNDEQQ 697

Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
            K  +PF Q   S   R  GTGLGL + + +V    G+  + S   +G+      PL   
Sbjct: 698 AKLFEPFSQADASISRRYGGTGLGLSICRRLVAMMDGEIGVDSQVGQGSSFWFSLPLEQV 757



 Score = 38.1 bits (87), Expect = 6.8,   Method: Composition-based stats.
 Identities = 22/236 (9%), Positives = 65/236 (27%), Gaps = 21/236 (8%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTWYG-KTTLWP 151
           +  ++    +  G+      G+     +   + DP   + + +L++ Q      ++ +  
Sbjct: 424 ILYVNPRWSELFGSRPDDSNGVD----AASFYADPADRDRVVELVRGQGYLADYESRMRR 479

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVH-VNRVDNDPRALGKRLDKKFSHLHEI 210
            +G+       ++A  I   + E        +         +         +      + 
Sbjct: 480 ADGS--EFWAMMSAAAI-DMDGE----PAVCVSTADITKRKEQEDALAEAKQTAEDASQA 532

Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270
           K    +    +         P +  +           A +   +        T+  + + 
Sbjct: 533 KSLFLATMSHEIRT------PMNGVLTMAQLLEDMPLAQEQKEMARVIRDSATALLTIIN 586

Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
           +  DF  I   +   +    +L +  +   E L+ R            +   P+  
Sbjct: 587 DILDFSKIESGKLELEIIEMSLSDVIESVAELLAPRASEKGIGLMTFIDPALPDLF 642


>gi|83593368|ref|YP_427120.1| PAS/PAC sensor hybrid histidine kinase [Rhodospirillum rubrum ATCC
           11170]
 gi|83576282|gb|ABC22833.1| PAS/PAC sensor hybrid histidine kinase [Rhodospirillum rubrum ATCC
           11170]
          Length = 866

 Score =  348 bits (894), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 113/547 (20%), Positives = 203/547 (37%), Gaps = 32/547 (5%)

Query: 277 TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY 336
                +    +  G               R    +S      +   P    + P P    
Sbjct: 193 RPGEGRGPSSEAIGRTDELGDLFRAVEDLRRRIEMSLLEAATQARFPS---ENPNPVIRT 249

Query: 337 -SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIA 395
              G L YAN S  L   +   + +         + A         + +       T I 
Sbjct: 250 SDSGGLLYANASARLRPGFLDGETL------HPTIIALVRETTGRGEIMTSEIRLGTRIY 303

Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
               L  +    +  + +         +    +       E        R +     +  
Sbjct: 304 L---LTAVPITHDRYVNIYASDVTDRVKAEIALRSLNESLE-AQVLTRTRDLAESEARTR 359

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           +I+    DG+ +++ +G I   N A  ++FGY   +++ +   + +     +        
Sbjct: 360 AIIATMVDGLIVMDDQGRIDLFNAAAQRIFGYDESEVVGQNAALLMSAEDAAGHAEPFGL 419

Query: 516 ILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPF--------SSCYSLTMHDISEWK 565
            L       L   +  +G  K      L + I  LP            ++  + DIS+  
Sbjct: 420 HLWDGRSPLLNGTRKVIGRRKNGASFPLAVAISALPAPPPGGAPARRLFTGVVRDISDQI 479

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + ++ L   K  AE  +  KSDFLA +SHE+RTPL  ++G ++++ +       +     
Sbjct: 480 RHESDLRKVKDEAEVANRAKSDFLAVMSHELRTPLNGVLGMADLLCDTPL----DAEQRR 535

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           Y   I  S   +L I+ND+LD+SKIE+G ++L   P      +    +L++  A +K I 
Sbjct: 536 YTRTIAISAEALLVIINDILDLSKIEAGHLDLESRPFDPATLLEGVRTLMEGPARDKAIA 595

Query: 686 IRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744
           +RTS     P +   D   ++QI LN+ +N + FT  G  + +     +   +   V DT
Sbjct: 596 LRTSIEGAKPPLRLGDEGRLRQILLNLANNGVKFTEKGS-LTLRLKAGTGGALRFEVEDT 654

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G+   + +     F Q+  S   R  G+GLGL + + +V    G+    STP  G+L 
Sbjct: 655 GIGIPKEKQDTLFHDFTQVSASTARRFGGSGLGLSICRRLVGLMGGRLGFDSTPGVGSLF 714

Query: 805 EII--FP 809
                 P
Sbjct: 715 WFEVDLP 721



 Score = 45.0 bits (105), Expect = 0.050,   Method: Composition-based stats.
 Identities = 23/240 (9%), Positives = 67/240 (27%), Gaps = 8/240 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI--GDLLKRQNTW--- 143
           +D  G +   +    +  G    +++G     +        +       L   ++     
Sbjct: 372 MDDQGRIDLFNAAAQRIFGYDESEVVGQNAALLMSAEDAAGHAEPFGLHLWDGRSPLLNG 431

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             K       G +  + + ++ALP        +     G+V          +  +++  +
Sbjct: 432 TRKVIGRRKNGASFPLAVAISALPAPPPGGAPARRLFTGVVRDISDQIRHESDLRKVKDE 491

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
               +  K    +V   +              + +      +    +   +  E   ++ 
Sbjct: 492 AEVANRAKSDFLAVMSHELRTPLNGVLGMADLLCDTPLDAEQRRYTRTIAISAEALLVII 551

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
           ++   L + E  H   L+  ++     TL    +   E  +     +L    +  +    
Sbjct: 552 NDILDLSKIEAGH---LDLESRPFDPATLLEGVRTLMEGPARDKAIALRTSIEGAKPPLR 608


>gi|16126721|ref|NP_421285.1| non-motile and phage-resistance protein [Caulobacter crescentus
           CB15]
 gi|221235503|ref|YP_002517940.1| sensory transduction histidine kinase pleC [Caulobacter crescentus
           NA1000]
 gi|13638405|sp|P37894|PLEC_CAUCR RecName: Full=Non-motile and phage-resistance protein
 gi|13424035|gb|AAK24453.1| non-motile and phage-resistance protein [Caulobacter crescentus
           CB15]
 gi|220964676|gb|ACL96032.1| sensory transduction histidine kinase pleC [Caulobacter crescentus
           NA1000]
          Length = 842

 Score =  348 bits (894), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 143/718 (19%), Positives = 265/718 (36%), Gaps = 52/718 (7%)

Query: 130 NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRV 189
           +              G+T      G    + +  A      R R F    G     V   
Sbjct: 136 DGADWKAAALAAGASGRTNWVGSVGETGRLYV--ATTTSLDRARAFVIASGDASRLVADP 193

Query: 190 DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH 249
           +          D K           +   +E + +  +        ++ + +        
Sbjct: 194 EKGESGALALPDGKLIAARGRGVQGAGALREAFALSIEDLGDGPAAVRGQAADGALLDVA 253

Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
              V +     +  +   S+   +                G            +  R   
Sbjct: 254 VRPVAQGALLAVAAAPTRSVANLDRQVMEGAFSLLVPLGVGIALALLL----MIQSRKAE 309

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
                F + E      V+      + +  +G+  Y +     +  +     +     L  
Sbjct: 310 VAHREFIDSERRFRLAVEAARCGIWEWDLNGDQVYLSDVTGAMFGWGGGGVVSGQDLLER 369

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
           +    +      ++  +   +       S R+   +    +                 + 
Sbjct: 370 ISIDHR----ERVRQALANAAMYGAFDVSFRVPASEQGARSLWIDARGQGFGKPGSEGHA 425

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
              G+  +  + RI + + +    +L   +E+ S+   + +R+G +L  NR    +F   
Sbjct: 426 RIIGVALDVTEERIAQARAQAAENRLRDAIESVSEAFVLWDRQGRLLMCNRNYRSVFSLE 485

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            + +  KP     E N  + +            +   E   +    + + + +    ++ 
Sbjct: 486 PKIL--KPGAARAEVNRFAALAIKQDHPAPDGAKGVREAEMM----DGRWIQIS---ERR 536

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKI----------------------------AEK 580
                  +T  DI+  K ++      ++                             AE 
Sbjct: 537 TAEGGLVMTAADITAIKTQEEARRRNEEQLQNAVAGLERSQEQLAELARKYETEKVKAES 596

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            +  KS+FLA +SHE+RTPL AI GFSE++ N+ FGPLG+ RY  Y+  I  SG  +L +
Sbjct: 597 ANKAKSEFLANMSHELRTPLNAINGFSEIMMNEMFGPLGDQRYKGYSQDIHSSGQHLLAL 656

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILAD 700
           +ND+LD+SKIE+GKMNL FE + L++   +A+ LV+  A    + +   F   +P I AD
Sbjct: 657 INDILDMSKIEAGKMNLKFESMHLEDVAEDAVRLVRNRAEAAGLKLDIDF-PQLPEIEAD 715

Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN---EEVILRVRDTGVGMTNYELEKAM 757
            R+VKQ+ LN+LSNAI FTP  G + +      +   + + + V DTG+G+   +L +  
Sbjct: 716 YRAVKQVLLNLLSNAIKFTPRAGSVTVRAEVRRDPFGDLIKVSVTDTGIGIAKEDLARLA 775

Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
           KPF Q+ +      +GTGLGL L K+++  + G   + STP +GT +    P+  +  
Sbjct: 776 KPFEQVESQFSKTTQGTGLGLALTKSLITMHDGVLEMHSTPGEGTTVSFTLPVRHSDQ 833


>gi|171060137|ref|YP_001792486.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
 gi|170777582|gb|ACB35721.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
          Length = 1333

 Score =  348 bits (894), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 108/594 (18%), Positives = 224/594 (37%), Gaps = 28/594 (4%)

Query: 230 PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYF 289
           P P + +   +             L      L  S    L          L         
Sbjct: 230 PHPFVYVSAALVVAAVQLPLWGAGLVVFTSSLAMSVVVGLGTVPAGQDPPLFASGWVTVL 289

Query: 290 GTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSF 348
             L           +              E      +++  +    V   G +  +NP+ 
Sbjct: 290 PLLLTMLPPLLLAAAQARGRRDRHRLANSEATFRLAMERSALGMALVTIDGRILRSNPAL 349

Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
             +  Y + +    A   +  L  P+  +        L  S+    +A            
Sbjct: 350 QQMLGYGADEL---AQMRTRELRHPEDPELAGSGLQQLASSEGGRYSAE---RCYAHRDG 403

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468
           + + +        ++  + +       +  + R     ++     L  I +     +A  
Sbjct: 404 SKVWVQLSAALVRDERGQVLYTLMQVDDVTERRDRLAALQASERFLRFIADNVPGMLAYW 463

Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528
           +R+   +  NRA  +  G+      +      +     ++   ++  +L+ + +Q     
Sbjct: 464 DRDERCVFANRAHIEWLGHDPTRPPQPRLADVIGAERYALSKPHIRAVLAGEPQQ---FE 520

Query: 529 TLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKN-------KLSHAKKIA 578
              + ++  L+   +             + + + DI+E K  +        +L+   + A
Sbjct: 521 RGHTARDGSLVDAWLQYVPDIEDGVVRGFFVQVSDITELKAAQRKLADANAELAARTRQA 580

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
           E  ++ KS+FLA +SHEIRTP+ AI+G S +++N R     NP   +    +  +   ++
Sbjct: 581 ESANAAKSEFLANMSHEIRTPMAAIVGLSHLLENSRL----NPDQQDLLRKMRGASKSLM 636

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RI 697
            +++D+LD+SKIE+G++ +     SL   + +   L+ L A+++ + +       +P ++
Sbjct: 637 AVIDDVLDLSKIEAGELRIDRSAFSLQALLDDLRGLMALSAHDRTLELVMRCDAGLPDQL 696

Query: 698 LADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDTGVGMTNYELE 754
             DL  ++Q+  N+LSNA+ FT  G    Q+ +    +    +   VRD+G+G++  E  
Sbjct: 697 DGDLMRLRQVLNNLLSNALKFTTVGEVLLQVALVARQSGRLRLRFTVRDSGIGISAAEQA 756

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           +  +PF Q+  S   R  GTGLGL +++ +V    G   + S P KG+      
Sbjct: 757 RLFRPFAQVDASTTRRYGGTGLGLVISRRLVRLMGGDISLRSAPGKGSEFSFDL 810



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/384 (9%), Positives = 94/384 (24%), Gaps = 26/384 (6%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR--QNTWYGKTTL 149
            G +   +  L + +G  A ++  MR  ++      +        L       +  +   
Sbjct: 339 DGRILRSNPALQQMLGYGADELAQMRTRELRHPEDPELAGSGLQQLASSEGGRYSAERCY 398

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
              +G+   V + L+A  +     +         V       D  A  +  ++    + +
Sbjct: 399 AHRDGS--KVWVQLSAALVRDERGQV--LYTLMQVDDVTERRDRLAALQASERFLRFIAD 454

Query: 210 IKKGHSSVEKEKYDIFSQQSP--PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
              G  +                        +            +     K  +      
Sbjct: 455 NVPGMLAYWDRDERCVFANRAHIEWLGHDPTRPPQPRLADVIGAERYALSKPHIRAVLAG 514

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
              + E  HT                        +    +  +               + 
Sbjct: 515 EPQQFERGHTARDGSLVDAWLQYVPDIEDGVVRGFFVQVSDITELKAAQRKLADANAELA 574

Query: 328 KCPIPFFVYSHGNLFYANPS---FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
                           AN +   FL    ++    +    GLS LL+  +L+ +      
Sbjct: 575 A--------RTRQAESANAAKSEFLANMSHEIRTPMAAIVGLSHLLENSRLNPDQQDLLR 626

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
            +  + ++ +A    +  +       L +    F       +      +   D    +  
Sbjct: 627 KMRGASKSLMAVIDDVLDLSKIEAGELRIDRSAFSLQALLDDLRGLMALSAHDRTLELVM 686

Query: 445 R-------KMEIEVMQLCSILEAT 461
           R       +++ ++M+L  +L   
Sbjct: 687 RCDAGLPDQLDGDLMRLRQVLNNL 710


>gi|302188804|ref|ZP_07265477.1| PAS [Pseudomonas syringae pv. syringae 642]
          Length = 576

 Score =  348 bits (894), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 117/524 (22%), Positives = 206/524 (39%), Gaps = 46/524 (8%)

Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS-----TLLDAPKLSDNNAIKPVM-- 385
                HG +   N     +  Y S D ++            L+       +    P+   
Sbjct: 48  IATDEHGVIQIFNVGAERMLGYHSEDVVDKITPADISDPAELIIRAAALSHELNTPITPG 107

Query: 386 ---LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
              L       I     L  I+ +     AM        +     +    I  ++   + 
Sbjct: 108 FEALVFKASRGIEDIYELTYIRKDGSRLSAM-VSVTSLRDSAETIIGYLLIGTDNTARKQ 166

Query: 443 NK-------RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
            +       +++  +     S++E+  D + + + +GII   N+ +  L G   ++++  
Sbjct: 167 EEEAQALLDQRLRDQQFYTRSLIESNIDALMMTDPQGIISDVNKQMMALTGRTRDELIGA 226

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--C 553
           P   F     P+  +  +  +LS       E         E ++S               
Sbjct: 227 PCKNFF--TDPASADAAIKRVLSEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRKLKG 284

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
                 D++E K+ +  L       E  S  KS+FLA +SHE+RTPL A+IGFSE +K+ 
Sbjct: 285 VFAAARDVTERKRFERTLEEKNIELEHASHMKSEFLATMSHELRTPLNAVIGFSEALKDG 344

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
             G + +     Y   I  SG  +L ++ND+LD+SK+E+G M L  E V LDE +S ++ 
Sbjct: 345 MVGDMTDA-QRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELESVDLDELLSNSLL 403

Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
           +V+  A  + I ++     +   +  D R  KQI  N+L+NA+ F+  GG + ++     
Sbjct: 404 IVREQAALQHIQLKLETEADFGVLELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRLVP 463

Query: 734 -----------------------NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
                                   + + L V DTG+G+   ++ K  K F QI +    +
Sbjct: 464 ASQAGLIDGDWPTYGFALPSGDCEQFLELSVSDTGIGIAQSDMNKLFKAFSQIDSGLARK 523

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
            EGTGLGL + K + + + G   + S    G    +  P+    
Sbjct: 524 FEGTGLGLAMVKQLAELHGGCVAVASVKDLGARFVVWLPIRQPE 567



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/176 (12%), Positives = 53/176 (30%), Gaps = 6/176 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            D  G + ++++++    G    ++IG    +         +  I  +L        + T
Sbjct: 199 TDPQGIISDVNKQMMALTGRTRDELIGAPCKNFFTDP-ASADAAIKRVLSEHKVSDYELT 257

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           +   +GT     +   A   + R+R+  G   F                +  + +  H  
Sbjct: 258 VRAYDGTETV--VSYNAATFHDRDRKLKGV--FAAARDVTERKRFERTLEEKNIELEHAS 313

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK-VSSLTEYYAHKDDVLKTEKYPLLT 263
            +K    +    +              +K+  V  +T+        +      LL+
Sbjct: 314 HMKSEFLATMSHELRTPLNAVIGFSEALKDGMVGDMTDAQRRYIGDIFNSGQHLLS 369



 Score = 45.0 bits (105), Expect = 0.057,   Method: Composition-based stats.
 Identities = 27/270 (10%), Positives = 70/270 (25%), Gaps = 36/270 (13%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGM-RLCDVSDILHI------------DPNNHIGD 135
            D HG ++  +    + +G ++  ++      D+SD   +             P     +
Sbjct: 50  TDEHGVIQIFNVGAERMLGYHSEDVVDKITPADISDPAELIIRAAALSHELNTPITPGFE 109

Query: 136 LL----KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN 191
            L     R      + T    +G+   +   ++   +        G+   G    N    
Sbjct: 110 ALVFKASRGIEDIYELTYIRKDGS--RLSAMVSVTSLRDSAETIIGYLLIGT--DNTARK 165

Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL------------RMKNK 239
                   LD++   L + +    S+ +   D      P   +            R +++
Sbjct: 166 QEEEAQALLDQR---LRDQQFYTRSLIESNIDALMMTDPQGIISDVNKQMMALTGRTRDE 222

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
           +          D          + SE      +      +  +        T  +  ++ 
Sbjct: 223 LIGAPCKNFFTDPASADAAIKRVLSEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRKL 282

Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
               +     +    F+         ++  
Sbjct: 283 KGVFAAARDVTERKRFERTLEEKNIELEHA 312


>gi|298505215|gb|ADI83938.1| phosphate sensor histidine kinase, HAMP and PAS domain-containing
           [Geobacter sulfurreducens KN400]
          Length = 589

 Score =  348 bits (894), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 114/566 (20%), Positives = 206/566 (36%), Gaps = 32/566 (5%)

Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS---- 304
                       +      +             + T     G +  +S  + +YL     
Sbjct: 47  ESRLARMVAAREIRDMRRDAPAAAAAISRETRARVTVVLEGGEVVADSDIAPQYLGTLEN 106

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIA 363
           H N P +    ++G             P   V +  N        L L+    +  +E A
Sbjct: 107 HANRPEVRQALEQGGGAAVRYSATIKTPMLYVATVLNTTEGERGVLRLS--LPLTAVEKA 164

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
                 L    L+ +  +  ++ Y   R    +   + T+            IP    ++
Sbjct: 165 KQSIRTLLGASLAVSLVVALLLSYLLSRLTSRSLRTITTLATQLGRGDYGRRIPVITRDE 224

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
             E           ++  + +  +  E  +L +IL    +G+ + +  G +   N A   
Sbjct: 225 VGELARVMNEMASQIERNLAR--ISAEKNRLDTILRGMGEGLMVSDAGGTVTLVNPAFLD 282

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           LFG       R+   +             ++            +       +EK +    
Sbjct: 283 LFGLTQSVEGRQIIEIARFPELHETFRAVVSSRSEH------VEEMTLPLGDEKQVLTHW 336

Query: 544 IIKKLPFS-SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
           +               HDIS+ K+ +                + DF+A VSHE+RTP+T 
Sbjct: 337 VPLMEEDELRGVVAVFHDISDLKRLEVV--------------RRDFVANVSHELRTPVTV 382

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           I G++E +           R   +   I      + D++ DLL +S++ESG + L    +
Sbjct: 383 IKGYAEALAGG-LVEEDPERAGRFLEIICSHSERLADLIRDLLTLSQLESGGLQLELTQI 441

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
            LD AVS A  L++  A  K I I  S     P +LAD   ++Q+ +N++ NA+ +TP G
Sbjct: 442 HLDRAVSHAAGLLEQKAARKEIAIDISALAGAPPVLADPGRLEQVLINLMDNALKYTPPG 501

Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
           G I +S    ++  V + V DTG+G+   +L +  + F ++  ++     GTGLGL + K
Sbjct: 502 GTITLS-ADEADGMVRVSVHDTGIGIPPKDLPRIFERFYRVDAARSRDEGGTGLGLSIVK 560

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIF 808
            ++  + G   + S   KGT      
Sbjct: 561 HIIQLHGGNITVESEHGKGTTFRFTL 586



 Score = 37.7 bits (86), Expect = 9.2,   Method: Composition-based stats.
 Identities = 31/323 (9%), Positives = 71/323 (21%), Gaps = 18/323 (5%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           DA G +  ++       G     + G ++ +++    +  +     ++  ++    +   
Sbjct: 268 DAGGTVTLVNPAFLDLFGLT-QSVEGRQIIEIARFPEL--HETFRAVVSSRSEHV-EEMT 323

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
            P+      +   +   P+   + E  G     + H          + +      SH   
Sbjct: 324 LPLGDEKQVLTHWV---PLMEED-ELRGV--VAVFHDISDLKRLEVVRRDFVANVSHELR 377

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
                              +         +     E      + L      LLT  +   
Sbjct: 378 TPVTVIKG------YAEALAGGLVEEDPERAGRFLEIICSHSERLADLIRDLLTLSQLES 431

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
              +   T            G L+  +      +             +   L    ++  
Sbjct: 432 GGLQLELTQIHLDRAVSHAAGLLEQKAARKEIAIDISALAGAPPVLADPGRLEQVLINLM 491

Query: 330 PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389
                    G       S         V   +   G+              +        
Sbjct: 492 DNALKYTPPGGTI--TLSADEADGMVRVSVHDTGIGIPPKDLPRIFERFYRVDAARSRDE 549

Query: 390 DRTCIAASARLHTIQWNRENSLA 412
             T +  S   H IQ +  N   
Sbjct: 550 GGTGLGLSIVKHIIQLHGGNITV 572


>gi|298249355|ref|ZP_06973159.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297547359|gb|EFH81226.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 554

 Score =  348 bits (894), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 89/576 (15%), Positives = 196/576 (34%), Gaps = 36/576 (6%)

Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302
           +   +      +       + +      EQ    +               ++      +Y
Sbjct: 1   MQCTHPDDRQRVLAVWQRAVQTGGLYETEQRLRQSTTGAYRWFLMQAVPFKDAQGTILKY 60

Query: 303 LSHRNHPSLSAYFDEGENLTPE----TVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSV 357
           +            ++    + E      +  P   +  S  G + Y N  +   T     
Sbjct: 61  IGTCTDIEEQKQAEQRSKTSEENWRMLAETVPQLVWASSPDGRVEYWNQRWYAYTGSSIE 120

Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
             +    G S  L   +    + +                 RL   Q             
Sbjct: 121 HALGH--GWSQFLHPDEYQ--HTLTVWHHALEMGEPYEIEYRLKDGQAEG--YRWFLARG 174

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII-LS 476
               ++  + +   G   +  + +  +  +     ++ +++++   GI  +  EG + + 
Sbjct: 175 MPVRDETGQIVKWFGTSTDIENQKRTEEALRQSQERIRALIDSNIIGIVSVEGEGEVLVE 234

Query: 477 TNRAVSKLFGYPVEDILRKPF--TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
            N A   + GY  ED+  +                   + E+ +      LE   +   K
Sbjct: 235 ANEAFLHMTGYIQEDVRSRTLNRVKITPLEHAPFFQRAIQEVNARGQHTPLETELVC--K 292

Query: 535 EEKLLSLRI-IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
           +   L + +  +            + D S  K+ + +              K DF+   S
Sbjct: 293 DGSRLPVLVGSVIFQKRPRQIISFVLDNSARKELEQR--------------KDDFINMAS 338

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HE+R PL A+   ++ +  +R     +       + ++     +  ++ +LLD+SKI++G
Sbjct: 339 HELRNPLAALKMQTQ-LVRKRLEKQSHHEAATALSRVEGPVKQLERLIGELLDVSKIQAG 397

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713
           K+    EPV L+  + E    +Q  +    +++R         ++ D   ++Q+  N++S
Sbjct: 398 KLEYLQEPVDLEALLHEVADTMQQISTTHAVVVR---GAAPCTLIGDKGRLEQVFTNLIS 454

Query: 714 NAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
           NAI ++P    + I    +    V +RV D G G+   + +K  + F ++ +  Q    G
Sbjct: 455 NAIKYSPDAKTVEIDLDASPE-MVTIRVHDHGPGIPREQRDKIFERFYRVADPNQKAIPG 513

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            G+GL +   +V  + G   + S   KG+   +  P
Sbjct: 514 LGMGLYIVAEIVKRHGGTITVDSEVGKGSTFTVTLP 549



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/321 (8%), Positives = 74/321 (23%), Gaps = 19/321 (5%)

Query: 55  TDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI 114
           TD  ++  +      SE  +         +  W     G ++  ++      G+     +
Sbjct: 65  TDIEEQKQAEQRSKTSEENWRMLAETVP-QLVWASSPDGRVEYWNQRWYAYTGSSIEHAL 123

Query: 115 GMRLCDVSDILHIDPNNHIG-DLLKRQNTWYGKTTLWPIEGTNL-YVPIDLAALPIYSRN 172
           G                 +    L+    +  +      +G    Y       +P+    
Sbjct: 124 GHGWSQFLHPDEYQHTLTVWHHALEMGEPY--EIEYRLKDGQAEGYRWFLARGMPVRDET 181

Query: 173 REFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK-KGHSSVEKEKYDIFSQQSPP 231
            +    + FG               ++  ++   L +    G  SVE E   +       
Sbjct: 182 GQIV--KWFGTSTDIENQKRTEEALRQSQERIRALIDSNIIGIVSVEGEGEVLVEANEAF 239

Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE-QEDFHTINLNQYTKKQYFG 290
            H+          +  +   + +K          + ++ E         L      +   
Sbjct: 240 LHMT----GYIQEDVRSRTLNRVKITPLEHAPFFQRAIQEVNARGQHTPLETELVCKDGS 295

Query: 291 TLQNNSK------ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYA 344
            L              + +S     S     ++ ++                        
Sbjct: 296 RLPVLVGSVIFQKRPRQIISFVLDNSARKELEQRKDDFINMASHELRNPLAALKMQTQLV 355

Query: 345 NPSFLLLTKYKSVDDIEIAGG 365
                  + +++   +    G
Sbjct: 356 RKRLEKQSHHEAATALSRVEG 376


>gi|229542344|ref|ZP_04431404.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           coagulans 36D1]
 gi|229326764|gb|EEN92439.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           coagulans 36D1]
          Length = 606

 Score =  348 bits (893), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 94/379 (24%), Positives = 172/379 (45%), Gaps = 26/379 (6%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +  +   E E  +L SIL   +DG+   +R G I+  N   +++     E +L +P    
Sbjct: 251 QEAQASTEGERRKLDSILTHMTDGVIATDRRGRIILINEPAAEMLDVSRETVLSQPLISV 310

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
           L+       +  LTE  S+ L  + E+               +I  +  F S     +HD
Sbjct: 311 LKIENEHKFDDLLTEQDSVILDFSTEEEPYILRAN-----FSVIQNEAGFVSGLITVLHD 365

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           ++E ++   +              + +F+A VSHE+RTPLT +  + E + +   G   +
Sbjct: 366 VTEQEKIDME--------------RREFVANVSHELRTPLTTMRSYLEALTD---GAWKD 408

Query: 621 PRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
            +   ++          ++ +VNDLL +SK++S   +L+ E V+  E     I   +  A
Sbjct: 409 EKIAPQFLGVTQNETERMIRLVNDLLKLSKMDSKDEHLNKEWVNFVEFFHHVIDRFE-MA 467

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
            ++ +  +    N    +  D   + Q+  NI+SNA+ ++P GGQI        NE++ +
Sbjct: 468 KQQNVTFKRKLPNTEIFVEIDEDKMTQVLYNIISNALKYSPEGGQITFKLR-ELNEKIEV 526

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            + D GVG+    ++K  + F ++  ++  +  GTGLGL +AK MV+ + G  +  S   
Sbjct: 527 SISDQGVGIPKENVKKIFERFYRVDKARSRKLGGTGLGLAIAKEMVEMHGGSIWASSKEG 586

Query: 800 KGTLIEIIFPLYDTSHPHD 818
           KGT I    P Y+ +   +
Sbjct: 587 KGTTIYFTLP-YEPAQEDE 604


>gi|239826363|ref|YP_002948987.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Geobacillus sp. WCH70]
 gi|239806656|gb|ACS23721.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Geobacillus sp. WCH70]
          Length = 744

 Score =  348 bits (893), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 112/731 (15%), Positives = 247/731 (33%), Gaps = 49/731 (6%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151
           +G   +++E   +      +++IG ++    D++  D       +L +  ++  +  +  
Sbjct: 51  NGEFVDVNEAACQLFEMEKYELIGKKMTMFLDLVPPDILMFQQSMLHKFGSFSDELLIKL 110

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
             G   ++   +          EF       I+                +  F  +    
Sbjct: 111 RNGKVKHIEFSMK----KDAFNEFD----LVIMRDISAHKALERERIIHEFLFKDVFNRA 162

Query: 212 KGHSSVEKEKYDIFSQQSPP--PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
                +  E                  K K+  L+       +        L   +E   
Sbjct: 163 VDSIVIFDEFGRFIDVNPAFCMSLNLEKEKLLKLSFQQFISKECADDFVRLLAELKEKGT 222

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFE-YLSHRNHPSLSAYFDEGENLTPETVDK 328
            + E             +   T    S              ++     + E       ++
Sbjct: 223 AKGELSLVRFDGTVKMFELTTTSNVYSGFYMAIMRDVTERKNMEIKLQKSEERFRAIFEQ 282

Query: 329 CPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
                 ++   G++  AN +     +   ++ +     L  L       D    +    +
Sbjct: 283 AHEAILIWDDQGHILNANHAASRTFEL-PLNLLVRKNLLDFL----DHDDEKVQRVFAEF 337

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
           R             T          + F       Q   +     I     + R  +R++
Sbjct: 338 RIKGEIRDEL----TFHMPNGQDKQLEFT----MKQGAIDGYHLTIFRNVTERRKMEREL 389

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
                +  SI + + +GI +      IL  N    ++F    E +L +P T F+ +    
Sbjct: 390 RESEQKFRSIFDHSMNGILLWGEGYHILDVNPIACEIFQATKEQLLHRPITAFIPEKARK 449

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQE 567
                  +   L       ++   +  ++K++   +  + +P      + + DI+E K+ 
Sbjct: 450 HFYKLAQQCDRLGEA--YAEMDFSNGGKQKIVEFSLKKEIIPGVG--MIMLRDITERKEM 505

Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
           + +L  +  +         +  A ++HEIR P+TA+ GF ++++           Y  Y 
Sbjct: 506 ELQLRKSDTLNVV-----GELAAGIAHEIRNPMTALKGFIQLLQGSI-----KEDYSMYF 555

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
           N I      +  I+ + L ++K ++    + F+   + + + + I L+   A    + I 
Sbjct: 556 NVIMSELKRIESIITEFLVLAKPQA----IQFQQNDVCKIMQDTIDLISAQATMHNVQIV 611

Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747
             FA ++P I  +   +KQ+ +NIL NAI   P GG++ +      +  + + + D G G
Sbjct: 612 ADFAPHVPFIYCEPNQLKQVFINILKNAIEVMPKGGEVTVRINRLDDSHIRISITDQGCG 671

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           +   +++K  +PF         +  GTGLGL ++  +++ + GK  + S    GT   I 
Sbjct: 672 IPQDKIKKLGQPFYTT------KERGTGLGLMVSYKIIEEHQGKIDVESEVDVGTTFHIT 725

Query: 808 FPLYDTSHPHD 818
            P+       +
Sbjct: 726 LPIERVEKEDE 736



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/368 (8%), Positives = 99/368 (26%), Gaps = 32/368 (8%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D  G   +++     ++     K++ +           D    +   LK + T  G+ +L
Sbjct: 170 DEFGRFIDVNPAFCMSLNLEKEKLLKLSFQQFISKECADDFVRLLAELKEKGTAKGELSL 229

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGF--GIVHVNRVDNDPRALGKRLDKKFSHL 207
              +GT     +   +          + + GF   I+       +     ++ +++F  +
Sbjct: 230 VRFDGTVKMFELTTTS----------NVYSGFYMAIMRDVTERKNMEIKLQKSEERFRAI 279

Query: 208 HEIK-KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS---LTEYYAHKDDVLKTEKYPLLT 263
            E   +     + + + + +  +      +   +     L ++  H D+ ++        
Sbjct: 280 FEQAHEAILIWDDQGHILNANHAASRTFELPLNLLVRKNLLDFLDHDDEKVQRVFAEFRI 339

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
             E  + ++  FH  N      +        +      + +      +     E E    
Sbjct: 340 KGE--IRDELTFHMPNGQDKQLEFTMKQGAIDGYHLTIFRNVTERRKMERELRESEQKFR 397

Query: 324 ETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
              D       ++  G ++   NP    + +      +              + +     
Sbjct: 398 SIFDHSMNGILLWGEGYHILDVNPIACEIFQATKEQLLHRP-------ITAFIPEKARKH 450

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
              L +         A       N      + F       +         +  +  + + 
Sbjct: 451 FYKLAQQCDRL--GEAYAEMDFSNGGKQKIVEFSL----KKEIIPGVGMIMLRDITERKE 504

Query: 443 NKRKMEIE 450
            + ++   
Sbjct: 505 MELQLRKS 512



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 57/149 (38%), Gaps = 3/149 (2%)

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
              +  +  +        R+++  +     I E + D I I N+ G  +  N A  +LF 
Sbjct: 7   PREEQSLVVDVKSLEEENRRLKERLNGYSIIFERSLDAIVIFNKNGEFVDVNEAACQLFE 66

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
               +++ K  T+FL+   P ++    + +       +     L   +  K+  +   +K
Sbjct: 67  MEKYELIGKKMTMFLDLVPPDILMFQQSMLHKFG---SFSDELLIKLRNGKVKHIEFSMK 123

Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSHAK 575
           K  F+    + M DIS  K  + +    +
Sbjct: 124 KDAFNEFDLVIMRDISAHKALERERIIHE 152


>gi|325915918|ref|ZP_08178214.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas vesicatoria
           ATCC 35937]
 gi|325537885|gb|EGD09585.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas vesicatoria
           ATCC 35937]
          Length = 673

 Score =  348 bits (893), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 102/535 (19%), Positives = 205/535 (38%), Gaps = 42/535 (7%)

Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF----FVYSHGN-----LFYANP 346
           S  S         P+  A       +  E        F     V+         +   N 
Sbjct: 2   STSSPSPDLAAALPAAIAEPFLDPAMYHEIFHNIDAGFCVIDMVFEGDQAVDYMIRTTNG 61

Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
           +F   T   +  ++ I G L          +                I    +   ++  
Sbjct: 62  AFERYTGLSNALNVSIRGMLPE-------HEQEWFDRYGQVARTGNRIHFEMQAKALRR- 113

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
                   +         PE      +  +  + +  +R++     +  ++ +     + 
Sbjct: 114 -------WYSVDAFRVGQPEQARVAVLFMDITERKRVERELAESEARFSALADGLPMPVW 166

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
           +++ +G++   N A  + FG  +       ++  L  +  S+    L+  L    ++ L 
Sbjct: 167 VLDAQGVVRFVNSAYGEFFGLDISSGTVSAWSELLHPDDRSIFQFELSAALE--EQRGLR 224

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH----DISEWKQEKNKLSH-------AK 575
            +      + +   + +       +    + +     D++E ++ +            A+
Sbjct: 225 ALVRARRHDGQWRWIEMTATPRYSADGRFIGLAGSSPDVTEQREIELAREQLLDSERSAR 284

Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
             AE  +  K +FLA +SHE+RTPLT I+G+SE++  +     G+P Y    + I  S  
Sbjct: 285 NEAESMARLKDEFLATLSHELRTPLTTILGWSELLLQRV--EEGHPNYKG-LSVIASSAR 341

Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695
               +++D+LD+S +  GK+ L  E + L E V EA+S  +L A+ K  ++         
Sbjct: 342 AQKRLISDMLDLSSMLLGKVQLEVESLDLAEQVREALSTQELAADGKDQVLELHVPPTPC 401

Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755
            +L D   ++Q+  N+LSNAI FTP+ G+I ++     +  +++ VRD+G G+    L  
Sbjct: 402 LVLGDATRLQQVLWNLLSNAIKFTPAHGRIDVTIE-RDDGHLLVSVRDSGDGIAAEFLPH 460

Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFP 809
               F Q   +   +  G GLGL + + +V+ + G+    S    +G    +  P
Sbjct: 461 LFGRFRQADGTTTRQHGGLGLGLAIVQQLVEMHGGQVGATSGGRGQGATFTVRLP 515



 Score = 76.2 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 47/463 (10%), Positives = 116/463 (25%), Gaps = 48/463 (10%)

Query: 54  FTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM 113
           F D  +         +SE  F        +   W +DA G ++ ++    +  G      
Sbjct: 134 FMDITERKRVERELAESEARFSALADGLPMP-VWVLDAQGVVRFVNSAYGEFFGLDISSG 192

Query: 114 IGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172
                 ++            +   L+ Q            +G   +  I++ A P YS +
Sbjct: 193 TVSAWSELLHPDDRSIFQFELSAALEEQRGLRALVRARRHDG--QWRWIEMTATPRYSAD 250

Query: 173 REFSGFRGFG-IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231
             F G  G    V   R     R      ++   +  E        E         ++P 
Sbjct: 251 GRFIGLAGSSPDVTEQREIELAREQLLDSERSARNEAESMARLKD-EFLATLSHELRTPL 309

Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLN---QYTKKQY 288
             +   +++        H +    +       +++  + +  D  ++ L       +   
Sbjct: 310 TTILGWSELLLQRVEEGHPNYKGLSVIASSARAQKRLISDMLDLSSMLLGKVQLEVESLD 369

Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSF 348
                  +  + E  +      L  +      L      +     +      + +  P+ 
Sbjct: 370 LAEQVREALSTQELAADGKDQVLELHVPPTPCLVLGDATRLQQVLWNLLSNAIKF-TPAH 428

Query: 349 LLLTKYKSVDDI-------EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401
             +      DD        +   G++                    +     +  +    
Sbjct: 429 GRIDVTIERDDGHLLVSVRDSGDGIAAEFLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQ 488

Query: 402 TIQWNREN-----------SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR----K 446
            ++ +              +     +P    +Q      +             +     +
Sbjct: 489 LVEMHGGQVGATSGGRGQGATFTVRLPEHVPDQAKRPRRELRRRLMSEQIVEARALNGLR 548

Query: 447 MEIEVMQ------LCSILE----------ATSDGIAIINREGI 473
           +     Q      L  +LE          + +D +A+I+  G 
Sbjct: 549 LLAVEDQPDMLDYLRRLLEEQGAEVVTAGSATDALALIDHRGH 591



 Score = 58.1 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 20/192 (10%), Positives = 51/192 (26%), Gaps = 13/192 (6%)

Query: 277 TINLNQYTKKQYFGTLQNNSKESFEYL--SHRNHPSLSAYFDEGENLTPETVDKCPIPFF 334
                +         +    +     L         +     E E       D  P+P +
Sbjct: 107 QAKALRRWYSVDAFRVGQPEQARVAVLFMDITERKRVERELAESEARFSALADGLPMPVW 166

Query: 335 VYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393
           V    G + + N ++           ++I+ G  +        D+ +I    L  +    
Sbjct: 167 VLDAQGVVRFVNSAYGEFFG------LDISSGTVSAWSELLHPDDRSIFQFELSAALEEQ 220

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI---NKRKMEIE 450
               A L   + +      +      + +     +   G  P+  + R     + ++   
Sbjct: 221 RGLRA-LVRARRHDGQWRWIEMTATPRYSADGRFIGLAGSSPDVTEQREIELAREQLLDS 279

Query: 451 VMQLCSILEATS 462
                +  E+ +
Sbjct: 280 ERSARNEAESMA 291


>gi|124268351|ref|YP_001022355.1| signal transduction histidine kinase-like protein [Methylibium
           petroleiphilum PM1]
 gi|124261126|gb|ABM96120.1| signal transduction histidine kinase-like protein [Methylibium
           petroleiphilum PM1]
          Length = 1077

 Score =  348 bits (893), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 126/641 (19%), Positives = 254/641 (39%), Gaps = 17/641 (2%)

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244
            V R D        R   +  +    +    S    +  +     P         V++L+
Sbjct: 301 RVARQDLPAFEASLRSLGQPHYRVFERDSALSANDSELMVMRYIEPRAGNDTALGVNALS 360

Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
              A +             +    L ++    T  +      +     ++     F  L 
Sbjct: 361 IRAAREAIARARLNDGATVTPGFRLTQETAQQTGVVVYRAVYRGDEPSRSLQGMVFITLR 420

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364
             +  +  A            +D    P      G+   A P+   L  + +        
Sbjct: 421 MEDALARLAVGAPRYLQFC-LLDSDAPPESRLLAGSSDCARPAVNPLWSHTAEIPFAGRT 479

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
               +     + +  A  P+    +     + +  L T       +L +      +  + 
Sbjct: 480 WELRVQAPNGVPNGPAAGPLSGESATAWLFSLTGLLGTGMM---GALLLLVTGRTRQTET 536

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
                   +E E  +    ++ +     +  SI  +   G+   + +G I   N A   +
Sbjct: 537 AVAERTEQLEHEITERLATEQALRESEQRFRSIFNSVPIGVVYTDLQGRIKQPNAAYCTM 596

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
            GY  E++L             +       +++   L     +     T+   +L + + 
Sbjct: 597 TGYSEEELLSLSLASLTHPEDRAADLASQQDLVDGRLP-LYRRRKRYVTRNGPVLWVSVT 655

Query: 545 IKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
           +  L             + DISE  + + +  HA++ AE  +  K++FL+R+SHE+RTPL
Sbjct: 656 VSLLRDEHGQPHRLVGLVEDISEHLRLE-EAEHARESAETANRAKNEFLSRMSHELRTPL 714

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
            A++GF++ + +   G   + R+  +   I ++G  +L+++ND+LD+S+IESG ++L  E
Sbjct: 715 NAMLGFAQ-LLDLDRGEPLHERHRMWVTQIQQAGWHLLEMINDVLDLSRIESGTLSLQVE 773

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFT 719
            +SL+  ++ +++LV+  A  + + +  + A + P ++L D   VKQI  N+LSNA+ + 
Sbjct: 774 SLSLEPLIAASMALVEPQARGRGLTLVRTMAEHAPLQVLGDATRVKQILTNLLSNAVKYN 833

Query: 720 PSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
              G++ +ST  T + +    + L V DTG+G+    L +  +PF ++   +    EGTG
Sbjct: 834 REAGEVRVSTRRTEDRDGTPMLELDVCDTGLGIEPQLLTQLFQPFNRLGRERG-ATEGTG 892

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           +GL +AK + +   G   + S P  G+   +  PL   + P
Sbjct: 893 IGLVIAKLLAERQGGSLKVRSEPGVGSTFTLRLPLDSQARP 933



 Score = 54.3 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 29/301 (9%), Positives = 81/301 (26%), Gaps = 18/301 (5%)

Query: 36  TEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYL 95
           T ++++         +    +  +   +     +SE  F        +   +  D  G +
Sbjct: 528 TGRTRQTETAVAERTEQLEHEITERLATEQALRESEQRFRSIFNSVPIGVVY-TDLQGRI 586

Query: 96  KEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD-LLKRQNT-WYGKTTLWPIE 153
           K+ +       G    +++ + L  ++       +      L+  +   +  +       
Sbjct: 587 KQPNAAYCTMTGYSEEELLSLSLASLTHPEDRAADLASQQDLVDGRLPLYRRRKRYVTRN 646

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
           G  L+V + ++ L     + +    R  G+V                +   +        
Sbjct: 647 GPVLWVSVTVSLL--RDEHGQP--HRLVGLVEDISEHLRLEEAEHARESAETA------- 695

Query: 214 HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE 273
                + K +  S+ S      +   +         + + L       +T  + +     
Sbjct: 696 ----NRAKNEFLSRMSHELRTPLNAMLGFAQLLDLDRGEPLHERHRMWVTQIQQAGWHLL 751

Query: 274 DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF 333
           +     L+    +    +LQ  S      ++             G  L     +  P+  
Sbjct: 752 EMINDVLDLSRIESGTLSLQVESLSLEPLIAASMALVEPQARGRGLTLVRTMAEHAPLQV 811

Query: 334 F 334
            
Sbjct: 812 L 812


>gi|254411490|ref|ZP_05025267.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196181991|gb|EDX76978.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 1342

 Score =  348 bits (893), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 95/414 (22%), Positives = 179/414 (43%), Gaps = 14/414 (3%)

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
               +  W+  +   +  I  + A+   ++      + +          +E E  QL  +
Sbjct: 485 IHTTSWSWSPSDIELLEAISKQIASACTQSHLYAQTQEQIQLLDNTLNSLERERRQLQQV 544

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
           + +    +A+ + E   ++ ++    + G   E I+ +     +  + P          L
Sbjct: 545 IASAPMAMAMFDNEMRYMAHSQKWLTVQGLEGESIIGR-CHYDVIPDVPEHWKQIHQRAL 603

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI 577
           +  +        +    +  ++ +R  I     S+     +   ++      +L  A++ 
Sbjct: 604 TGQV--ITNPEDIWERSDGSIVYMRWAINPWYTSNGQVGGIVIATDQIN---ELVEAREA 658

Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
           A +    KS FLA +SHEIRTP+  ++G   ++   +       R  +YA  I RS + +
Sbjct: 659 ALEAVRFKSKFLANMSHEIRTPMNGVLGMVGLLLQTQLTS----RQRDYAQTIRRSADHL 714

Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-R 696
           L I+ND+LD SK+E+G+M L      LD  +   + ++   A  K + + T     +P +
Sbjct: 715 LTIINDILDFSKLEAGEMELETIEFDLDGCIESVLDVLATQAEAKNLELATLVDRKVPRQ 774

Query: 697 ILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDTGVGMTNYEL 753
           +  D   ++Q+ LN+ +NAI FTP G     + + T  + N  +   V DTGVG++    
Sbjct: 775 LKGDPARLRQVLLNLANNAIKFTPQGEVVIHVTLETATSKNATLHFAVSDTGVGISPEGQ 834

Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           EK  + F Q+ NS   +  GTGLGL + K +VD   G+  + S   KG+     
Sbjct: 835 EKLFQSFSQVDNSTTRQYGGTGLGLAICKQLVDLMGGEIGVESQVGKGSTFWFT 888


>gi|320101775|ref|YP_004177366.1| PAS/PAC sensor hybrid histidine kinase [Isosphaera pallida ATCC
           43644]
 gi|319749057|gb|ADV60817.1| PAS/PAC sensor hybrid histidine kinase [Isosphaera pallida ATCC
           43644]
          Length = 1093

 Score =  348 bits (893), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 111/581 (19%), Positives = 215/581 (37%), Gaps = 40/581 (6%)

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
            +           H       T  Q  G    +   +    S  +   L           
Sbjct: 104 RTARRGWHPNYAPHPTPTPIVTGLQTIGVHAVSHASTTSTASTDDPVHLEGEMGRLRARF 163

Query: 323 PETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
             ++ +  + ++ +      +   S           ++            P   D     
Sbjct: 164 IASIKRAGLNYWDFDFATNRFIFSSTYKSLLGYENRELPDNANTWRERIHPNDRDLALN- 222

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
              L  +           H ++        +        ++        G+  +    R 
Sbjct: 223 --ALEAAREGRDPILCFSHRLKTKDGGYRWVLAHGVVLRDEAGVPRHITGLILDLTSQRH 280

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIIN-REGI---ILSTNRAVSKLFGYPVE---DILRK 495
           N+ ++ +    + ++++  +D +AI +   G    I+  N       G       ++L +
Sbjct: 281 NQVELRL----MHAVVDHAADAVAITSSAHGRHRAIVYANPTFMDWLGMDASSYFELLGR 336

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--- 552
               F         +     I      + L + TL   ++   L + + +  +P      
Sbjct: 337 EIEEFFCLEDQPSSDASSATISISG--RNLARETLLKRRDGSTLEVDLQVFTIPGEREAD 394

Query: 553 -CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
                   DIS  K+ + +L  AK+IA++ +  K+ FLA +SHEIRTPL +++G + ++ 
Sbjct: 395 LRLVWVARDISVRKRFEAQLVEAKRIADQANEAKTRFLAGMSHEIRTPLNSVLGMTRLLM 454

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
           +            + A  I  SG  +L++VN +LD+SKIESG+M L    +S    V   
Sbjct: 455 DTPLTA----EQRDLAAAIQSSGESLLELVNGVLDLSKIESGRMELEHASMSPRGVVESV 510

Query: 672 ISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIII-- 727
           + ++   A  K + +    A ++P  +  D   ++Q+ +N+ SNA+ FT SG   I +  
Sbjct: 511 LDMIAATAERKGLEVAARVAEDVPERVRGDAAKLRQVLVNLASNAVKFTASGSVTIDVIT 570

Query: 728 -----------STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
                      S +      +   VRDTGVG+   ++ +    + Q   S      GTGL
Sbjct: 571 LGQCPLRPGRDSVSDRPGLILSFTVRDTGVGIAPDKVSRLFDAYRQADASITRLYGGTGL 630

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY-DTSHP 816
           GL ++K +V+   G+  + S P +G++      +  D+SHP
Sbjct: 631 GLAISKKLVELMGGEIEVESEPGRGSIFRFTIRVEPDSSHP 671



 Score = 39.2 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 35/414 (8%), Positives = 87/414 (21%), Gaps = 33/414 (7%)

Query: 61  SVSNTNYLDSENTFVFDPIPRTVRFT----------WNID-AHGYLKEISEELPKTIGNY 109
           S ++T   D       +      RF           W+ D A       S      +G  
Sbjct: 139 STTSTASTDDPVHLEGEMGRLRARFIASIKRAGLNYWDFDFATNRFI-FSSTYKSLLGYE 197

Query: 110 AFKMIGM--RLCDVSDILHID-PNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAAL 166
             ++        +       D   N +    + ++     +     +       +    +
Sbjct: 198 NRELPDNANTWRERIHPNDRDLALNALEAAREGRDPILCFSHRLKTKDGGYR-WVLAHGV 256

Query: 167 PIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL--DKKFSHLHEIKKGHSSVEKEKYDI 224
            +           G  +   ++  N           D     +      H       Y  
Sbjct: 257 VLRDEAGVPRHITGLILDLTSQRHNQVELRLMHAVVDHAADAVAITSSAHGRHRAIVYAN 316

Query: 225 FSQQSPPPHLRMKNKVSSLTEYYAH---KDDVLKTEKYPLLTSEESSLPEQEDFHTINLN 281
            +                  E       +D          ++    +L  +      + +
Sbjct: 317 PTFMDWLGMDASSYFELLGREIEEFFCLEDQPSSDASSATISISGRNLARETLLKRRDGS 376

Query: 282 QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNL 341
                    T+    +     +      S+   F+          D+             
Sbjct: 377 TLEVDLQVFTIPGEREADLRLVWVARDISVRKRFEAQLVEAKRIADQANE---------- 426

Query: 342 FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401
             A   FL    ++    +    G++ LL    L+         +  S  + +     + 
Sbjct: 427 --AKTRFLAGMSHEIRTPLNSVLGMTRLLMDTPLTAEQRDLAAAIQSSGESLLELVNGVL 484

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
            +       + +              +       E     +  R  E    ++ 
Sbjct: 485 DLSKIESGRMELEHASMSPRGVVESVLDMIAATAERKGLEVAARVAEDVPERVR 538


>gi|309390020|gb|ADO77900.1| multi-sensor signal transduction histidine kinase [Halanaerobium
           praevalens DSM 2228]
          Length = 593

 Score =  348 bits (893), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 76/369 (20%), Positives = 167/369 (45%), Gaps = 26/369 (7%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           ++  E  ++ +IL +  DG+  +N EG +   N A  ++F    E I  K     L  + 
Sbjct: 249 EVSQEKNRIEAILASMLDGVIAVNAEGEVTLINPAARRIFNIEAEKIRGKTLISSLFSHR 308

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISE 563
             +         + D ++ + +       E+K++    I         +   + + DI+E
Sbjct: 309 IDMYLQ-----RAFDKKEVISREIKYKNPEQKIIQATFIPLLAADKKLNGGVIVLTDITE 363

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            ++ +                ++DF+A VSHE+RTPLT+IIG+ + +             
Sbjct: 364 LRKLETV--------------RNDFVANVSHELRTPLTSIIGYLDTLLESDI--EDQDTR 407

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
             +   I    + + +++NDLL++SKIES    L  +    ++ V + ++L+   A +++
Sbjct: 408 ERFLQIIKEETDRLSNLINDLLNLSKIESQIFKLEADNF--EKIVKKVVNLLSQKAKKQK 465

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
           + +     NN+P +      +KQ+ +N++ NAI +T  GG++ +      + ++   V+D
Sbjct: 466 LELNLEIDNNLPLVYMVREQIKQVLINLIDNAIKYTAEGGKVEVKVKQEKD-KIYFSVQD 524

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
            G+G+   + E+  + F ++  ++     GTG+GL + + ++  +  +  + S    G+ 
Sbjct: 525 NGMGIPQADQERIFERFYRVDKARSRALGGTGIGLSIVRNIIKQHGSEIQLKSREGVGSE 584

Query: 804 IEIIFPLYD 812
                 + +
Sbjct: 585 FYFYLKIAE 593


>gi|239831458|ref|ZP_04679787.1| PAS domain S-box-containing protein [Ochrobactrum intermedium LMG
           3301]
 gi|239823725|gb|EEQ95293.1| PAS domain S-box-containing protein [Ochrobactrum intermedium LMG
           3301]
          Length = 783

 Score =  348 bits (893), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 155/757 (20%), Positives = 286/757 (37%), Gaps = 68/757 (8%)

Query: 93  GYLKEISEELPKTI-----GNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
           G    I   L + +            +      ++    I+  +     L        + 
Sbjct: 39  GKFVSIEPILRRLVPALIIIFLIILGVARVFSMLAWRDDIEQQHK--AFLSAATANLAQM 96

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                 GT+      L+A  I     EF           +R  + P      +D + S +
Sbjct: 97  IERAANGTDAGA--QLSAKDIQDTMAEFR----------SRGLSSPGMTLAVIDGQSSVV 144

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
                G     K    I S   P      +  V  +T         L       L+   S
Sbjct: 145 AASGPGPDISGKPLDTILSDAQPLFLFAERAGVLKVTLQAEPAFGALSKP----LSLPYS 200

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL-----SHRNHPSLSAYFDEGENLT 322
            +  + +       +             +   F  L                  + +   
Sbjct: 201 IIAVEPESTIFAEWRRAVSLNVTLFAGTTGVMFAILYAYFSQAARAREADDLSGQIQRRI 260

Query: 323 PETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
              + +     + +       Y + S   +  Y++ D +   G ++ +++       +  
Sbjct: 261 DLALARGRCGLWDWDMARGRIYWSRSMYEMLGYEAQDAVLPFGDVAAIINTEDGDLYSIA 320

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
           +      +         R+  ++    + + M       +      +   GI  +  +  
Sbjct: 321 EQA----AAGDISHVD-RVFRMRHADGSWVWMRVRAEIASEGD---LHLVGIAFDVSEQH 372

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVF 500
              ++     M++   +E  S+   + +    ++  N   S+  G PV  +    P    
Sbjct: 373 RFAQQTAEADMRIREAIENISEAFILWDSNNRLVMANSKFSEYAGLPVWTLKPGVPRNEV 432

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKIT---------LGSTKEEKLLSLRIIIKKL--- 548
                P      +    +    QT E+              T++  L+S+   I +L   
Sbjct: 433 DAHTRPFTFERRMANEHNRAGGQTFERQLSDGRWLQVNERRTQDGGLVSIGTDITQLKLH 492

Query: 549 -----PFSSCYSLTMHDISEWKQEKNK-----------LSHAKKIAEKESSHKSDFLARV 592
                        T+HD+S  ++ +                 K+ AE  +  KS+FLA +
Sbjct: 493 QERLVDSERRLMATIHDLSIARKGERDRVRELSELARKYGQEKERAEAANRAKSEFLANM 552

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHE+RTPL AIIGFSE+I+   FGPLG+ RY EY N I  SGN +L+++ND+LD+SKIE+
Sbjct: 553 SHELRTPLNAIIGFSEMIQAGTFGPLGSDRYEEYINDIHTSGNFLLNVINDILDMSKIEA 612

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712
           G  +L  E + L   ++E + ++ L A+EK I + T   + + ++ AD R++KQ+ +N+L
Sbjct: 613 GHFSLDREEIDLCPLINETVRMISLQADEKNIAVNTRIEDAM-QLYADRRAIKQVLINLL 671

Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           SNA+ FT  GGQI +    T +  + + ++DTGVG+    ++K  +PF Q+ N       
Sbjct: 672 SNAVKFTSYGGQITVRARKTGSA-LFMTIQDTGVGIPKSAIKKIGQPFEQVENQFTKTHT 730

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           G+GLGL + +++ + + G   I ST   GT++ +  P
Sbjct: 731 GSGLGLAITRSLAELHGGWLRIRSTEGVGTVVSVCIP 767



 Score = 41.6 bits (96), Expect = 0.51,   Method: Composition-based stats.
 Identities = 28/249 (11%), Positives = 61/249 (24%), Gaps = 13/249 (5%)

Query: 86  TWNID-AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN--HIGDLLKRQNT 142
            W+ D A G +   S  + + +G  A   + +   DV+ I++ +  +   I +     + 
Sbjct: 271 LWDWDMARGRI-YWSRSMYEMLGYEAQDAV-LPFGDVAAIINTEDGDLYSIAEQAAAGDI 328

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
            +             +V + + A      +    G     I       +         D 
Sbjct: 329 SHVDRVFRMRHADGSWVWMRVRAEIASEGDLHLVG-----IAFDVSEQHRFAQQTAEADM 383

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK--YP 260
           +     E       +      +    S          V +L       +    T    + 
Sbjct: 384 RIREAIENISEAFILWDSNNRLVMANSKFSEY-AGLPVWTLKPGVPRNEVDAHTRPFTFE 442

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
              + E +    + F     +    +      Q+    S      +         D    
Sbjct: 443 RRMANEHNRAGGQTFERQLSDGRWLQVNERRTQDGGLVSIGTDITQLKLHQERLVDSERR 502

Query: 321 LTPETVDKC 329
           L     D  
Sbjct: 503 LMATIHDLS 511


>gi|223936889|ref|ZP_03628798.1| multi-sensor hybrid histidine kinase [bacterium Ellin514]
 gi|223894458|gb|EEF60910.1| multi-sensor hybrid histidine kinase [bacterium Ellin514]
          Length = 938

 Score =  348 bits (893), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 103/835 (12%), Positives = 246/835 (29%), Gaps = 110/835 (13%)

Query: 47  DSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTI 106
             F++S      Q S +  +  +SE  F    +  T +  W     G L   +       
Sbjct: 5   SRFDESPD-STPQHSSAEQHLRESEARFR-SLVLATAQAIWTAGPDGRLTSKNPSWEAFT 62

Query: 107 GNYAFKMIGMRLCDVSDILHIDPNNHIGD-LLKRQNTWYGKTTLWPIEGTNLYVPIDLAA 165
           G    + +                       +    ++  +  L   +G   +  +   A
Sbjct: 63  GLTHQESVDFGWLKAVHPEDQQLTLSAWKTAVANTASYSIEHRLQRHDG--QWRYMLTRA 120

Query: 166 LPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK---RLDKKFSHLHEIKKGHSSVEKEKY 222
           +P++    +       G              G     L ++ S     +    ++     
Sbjct: 121 VPVFDEQGQVR--EWIGANTDITERKRAEFRGAVFSVLGQRLSAARTPRDAARTILDAAD 178

Query: 223 DIFSQQSPPPHLRMKNKVS-----------SLTEYYAHKDD---------VLKTEKYPLL 262
            +              +              L    A   D          +  E   L+
Sbjct: 179 QLIGWDGCFLDSYSSEQDVINSVLAMDLMNGLRTEVAPSGDGGEPTATMRRVLAEGAQLI 238

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL------------------- 303
             E             ++N+      F  ++++ K +                       
Sbjct: 239 LRENPQSQPNSTMRFGDVNRPAASLMFVPIRSSLKVAGFLSIQSYKLHAYSREDLRTLQS 298

Query: 304 ------SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYK 355
                 +              E       D+ P P  VY      +  AN + +    Y 
Sbjct: 299 LADYCGAALERIQSEEALHASERKYLLLFDRNPSPLIVYDIETLRVLAANEAAIHHYGYS 358

Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
             + +        +         +    V   ++    +        ++ +    L    
Sbjct: 359 REEFL-------AMTLKDYRPPEDVPFLVKKMQTMGDGLQLLGPFRHLKKDGSIILVDIN 411

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
                         +  +  +  + +  +  +    ++L + +E ++D I  ++ +G+I 
Sbjct: 412 SHSLTFEG---RKARLVMMTDITERKRAEDNL----VRLATAVEQSTDIIIHLDLDGLIE 464

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
             N A  ++ GY  E ++ +                +   +  + +  +     +   K+
Sbjct: 465 YVNPAFERITGYGREAMVGRHINSL--PQDGEAHFEFAHLVGRIAVSGSWSGRFVSRKKD 522

Query: 536 EKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
            +     + I  +         Y     D++     + ++  A+K+              
Sbjct: 523 GQKFEADVSIYPIRDEGGKITSYIAVERDVTRETALEEQVRLAQKM-----EAIGLLAGG 577

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           V+H+    L  I+G++ ++               +   + ++      +   LL   + +
Sbjct: 578 VAHDFNNLLQVIMGYT-MLAR----SASEHELGHHLEQVQKAAERATQLTRQLLAFGRRQ 632

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
           +    +      +++ V++ + +++     + I I      ++  I AD   ++Q+ LN+
Sbjct: 633 A----MQKTDTDINQLVADHLKMLRRLI-GENIEIHFLAGKHLENIFADKGQLEQVLLNL 687

Query: 712 LSNAIHFTPSGGQIIISTT--------------HTSNEEVILRVRDTGVGMTNYELEKAM 757
             NA    P+GGQ+ + T                 +   ++L V D G+GM    L +  
Sbjct: 688 CVNARDAMPNGGQLTLETQNFVIDHSFCEDHPWARAGNFILLTVTDNGMGMDRETLSRIF 747

Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
           +PF         +G GTGLGL +   ++  + G  +++S P  GT  +I  P+  
Sbjct: 748 EPFFTTKP----KGRGTGLGLSVVYGIIRQHEGLIHVYSEPGLGTTFKIYIPMAQ 798


>gi|189203185|ref|XP_001937928.1| autoinducer 2 sensor kinase/phosphatase luxQ [Pyrenophora
           tritici-repentis Pt-1C-BFP]
 gi|187985027|gb|EDU50515.1| autoinducer 2 sensor kinase/phosphatase luxQ [Pyrenophora
           tritici-repentis Pt-1C-BFP]
          Length = 918

 Score =  348 bits (893), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 108/580 (18%), Positives = 210/580 (36%), Gaps = 54/580 (9%)

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
             +    +                  ++   + +  + + +       A  +E E     
Sbjct: 124 TPTLQQPEFPPRGPPTKGNGDMAASASVFQKATQLKDAILNSITMPAYAQIEENEKQFEY 183

Query: 325 TVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
             +  P+  +  +  G   + +  +   T       +        L   P      A + 
Sbjct: 184 IANFMPVMVWTTTPDGMHDWFSQRWYDYTGLTPDKSLGEG---WRLPFHPDDMATTAPR- 239

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
                          R             M        +     +   G   +  D  + 
Sbjct: 240 WFHSLKTGDEYNTEYRCQRY---DGEWRWMLGRALPFYDDSGRIVKWFGTCTDIHDLVMA 296

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINR-------EGIILSTNRAVSKLFGYPVEDILRKP 496
           +++      QL  +++     + +I+R       EG I        ++     +++L + 
Sbjct: 297 RQEARQTREQLQQVIQYAKIVLWVIDRNNEVKVLEGDIT----PHERM---KKKELLGRN 349

Query: 497 FTVFLE--QNTPSVMNHYLTEILSLDLRQTL---EKITLGSTKEEKLLSLRIIIKKLPF- 550
                E   N        + EIL       +     ++       +L+ L +   +    
Sbjct: 350 ILDVFELTGNDRKRWQGPIQEILQGKQSDEIVNGGYMSEARYYRTRLVPL-MSASRTAGI 408

Query: 551 -----SSCYSLTMHDISEWKQE----------KNKLSHAKKIAEKESSHKSDFLARVSHE 595
                         DI+E ++            ++L   +  A++ S  KS FLA +SHE
Sbjct: 409 EGNAFVDGVIGVSMDITELREREEQLKEQEKENSRLLANEAAAKEASRMKSQFLANMSHE 468

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           IRTP+  +IG SE++ +       N    + A  I RS N +L ++ND+LD SK+ESG++
Sbjct: 469 IRTPIAGVIGMSELLFDMNL----NDEQKDCAENIHRSANSLLTVINDILDFSKVESGRL 524

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI---PRILADLRSVKQIALNIL 712
           ++     SL   + +   ++   A  K +  ++S  + +    R++ D   ++QI  N+L
Sbjct: 525 DVEEVQFSLSVVLRDVNKMMSFAAQRKGLDYQSSIQDEVQADLRVMGDPGRLRQILTNVL 584

Query: 713 SNAIHFTPSGGQ---IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
           +N+I FT  G     ++IS        V   V DTG+G+     ++  +PF Q  +S   
Sbjct: 585 TNSIKFTSVGTVKLSVMISQESKDMVTVNFSVVDTGIGIEEEVRKRLFQPFSQADSSTAR 644

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           R  GTGLGL ++K +V+   G+ ++ S   +GT      P
Sbjct: 645 RFGGTGLGLTISKNLVELMKGQIWLDSKLGQGTTATFWIP 684



 Score = 64.3 bits (155), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 21/160 (13%), Positives = 41/160 (25%), Gaps = 6/160 (3%)

Query: 62  VSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV 121
            +     ++E  F +      V   W     G     S+      G    K +G      
Sbjct: 169 PAYAQIEENEKQFEYIANFMPV-MVWTTTPDGMHDWFSQRWYDYTGLTPDKSLGEGWRLP 227

Query: 122 SDILH-IDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRG 180
                           LK  + +  +      +G   +  +   ALP Y  +      + 
Sbjct: 228 FHPDDMATTAPRWFHSLKTGDEYNTEYRCQRYDGE--WRWMLGRALPFYDDSGRIV--KW 283

Query: 181 FGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKE 220
           FG           R   ++  ++   + +  K    V   
Sbjct: 284 FGTCTDIHDLVMARQEARQTREQLQQVIQYAKIVLWVIDR 323


>gi|168703443|ref|ZP_02735720.1| sensory box histidine kinase/response regulator [Gemmata
           obscuriglobus UQM 2246]
          Length = 1018

 Score =  348 bits (893), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 105/592 (17%), Positives = 212/592 (35%), Gaps = 27/592 (4%)

Query: 236 MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN 295
           M N   +       +   L        T    ++     +  +            +  ++
Sbjct: 1   MSNAAGANRAGRVVELAALARGAIHRRTDRTFAVLLLLQWFAMVALAVWVSPRTWSGADS 60

Query: 296 SKESFEYLSHR---------NHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYAN 345
                 + +              +L                       ++   G +    
Sbjct: 61  RTHPHIWAAVALGGLVVSLPVALALRRPGATSTRCVIAAAQMLSAGVLIHLTGGRIETHF 120

Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405
             F  L       D  +    S +     ++   A    +                 + +
Sbjct: 121 HVFGSLAFLALYRDWRVLLVASAVTALDHIARGLAWPESVYGTVAGADWRWVEHAGWVVF 180

Query: 406 NRE--NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
                 +               E   +      +   R    ++  +  +  S  ++ + 
Sbjct: 181 LDVFLGASCWWGERDLTRTAQREAELEAAHATVEERIRERTAELWQQEERFRSAFDSAAI 240

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
           G+AI+  EG  +  NR +    GY  E +L+  F      +       +   ++S ++  
Sbjct: 241 GMAILTPEGRFVRVNRVLCDTVGYTDEQLLQCAFEAVTHPDDRPADAAFTARMISGEIAS 300

Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAE 579
             ++      K   ++ +++ +  +  ++         + DI+  K+ +  L  A   AE
Sbjct: 301 -YQREKRYVHKAGSVVWVQVNVSLVRDAAGRPHHVVSQILDITARKEWEEVLRRATAAAE 359

Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639
             S  KS+FLA +SHEIRTP+  I+G +E++   R  P       E    +  S + +L 
Sbjct: 360 AASRAKSEFLANMSHEIRTPMNGIVGMTELLLETRLTP----EQRESVGLVKSSADALLT 415

Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL- 698
           ++ND+LD SKIE+GK++L   P SL + V + +  +   A+ K + +      ++P +L 
Sbjct: 416 VINDILDFSKIEAGKLDLDPLPFSLRDMVGDTLKALAGRAHAKGLELACELLPDLPDVLL 475

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELE 754
            D   ++Q+  N++ NAI FT  G ++++             +   V DTG+G+   +L+
Sbjct: 476 GDAHRLRQVLTNLVGNAIKFTDRG-EVLVRCERVPESGDAVVLRFSVTDTGIGIPGEKLK 534

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
              +PF Q   S   +  GTGLGL + + +V    G+ +  S   KG+    
Sbjct: 535 AVFEPFTQADGSTTRKYGGTGLGLTICQRLVGLMGGRLWAESESGKGSTFSF 586



 Score = 54.6 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/228 (8%), Positives = 54/228 (23%), Gaps = 14/228 (6%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ--NTWYGKTT 148
             G    ++  L  T+G    +++      V+       +      +      ++  +  
Sbjct: 247 PEGRFVRVNRVLCDTVGYTDEQLLQCAFEAVTHPDDRPADAAFTARMISGEIASYQREKR 306

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                G+   V + +    +               +       +   + +R         
Sbjct: 307 YVHKAGS--VVWVQVNVSLVRDAAGRPHHV--VSQILDITARKEWEEVLRRATAAAEAAS 362

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
             K    +    +          P   +      L E     +                +
Sbjct: 363 RAKSEFLANMSHEIR-------TPMNGIVGMTELLLETRLTPEQRESVGLVKSSADALLT 415

Query: 269 -LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
            + +  DF  I   +        +L++   ++ + L+ R H       
Sbjct: 416 VINDILDFSKIEAGKLDLDPLPFSLRDMVGDTLKALAGRAHAKGLELA 463


>gi|303326243|ref|ZP_07356686.1| sensor histidine kinase with PAS/PAC and response regulator receiver
            domains [Desulfovibrio sp. 3_1_syn3]
 gi|302864159|gb|EFL87090.1| sensor histidine kinase with PAS/PAC and response regulator receiver
            domains [Desulfovibrio sp. 3_1_syn3]
          Length = 1228

 Score =  348 bits (893), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 110/598 (18%), Positives = 216/598 (36%), Gaps = 38/598 (6%)

Query: 233  HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL 292
                  ++S+++E           +    L+   + +        I +     ++    +
Sbjct: 494  VNATDEELSAVSEDTYRAISENLWQTAASLSVSTTLMSVLVILIAIWMASVFTRRIAQMV 553

Query: 293  QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC------PIPFFVYSHGNLFYANP 346
            +  S+        R    +        +      D        P+   V   G L Y N 
Sbjct: 554  RGISRFRAGERQFRFRAPVKDEMGALSDSFDGLADSLVNSDKGPLSI-VDLSGKLAYMNE 612

Query: 347  SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
            + L L      D +      +T+          A        +  T        H+ ++ 
Sbjct: 613  AGLALIGKTLEDVLGKPYAENTIFPPGTAYCPLAC------LARGTEPEVLRHEHSGRYY 666

Query: 407  RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
            +  + ++T       +             +       ++++E +   L +I   + D + 
Sbjct: 667  QGRAESLT-------DGRGVVTGHLVHTADVTAIIEEQKRIERQRALLETIFVNSPDILW 719

Query: 467  IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
              ++ G   + N   + L     E+I   P +        +         +        E
Sbjct: 720  YQDKGGNYQAVNPRFAALVNKTPEEIRGLPASAVFPPEVAARSLENFRAAIEGRTPLYTE 779

Query: 527  KITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKI----- 577
            +       +    ++ ++      +            D+S+    + +L   +       
Sbjct: 780  ETVYF--ADGHSENMDVVRIPQFNAGGEVLALLGVARDVSQRVAVEKELRRIQTELQEAC 837

Query: 578  --AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
              A + +  KS FLAR+SHEIRTP+ AIIG + + + +          +  AN I+ S +
Sbjct: 838  ATANRANEAKSSFLARMSHEIRTPMNAIIGMANIARKKLHARSPTDELLNCANQIEVSSH 897

Query: 636  LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN-NI 694
             +L ++ND+LDISKIE+GK+ L  +  +L + V+   S+++    EK I    +      
Sbjct: 898  HLLGLLNDILDISKIEAGKIELSEDSFALSKLVNSVESIIRPRCMEKNIAFNVAVEGIAT 957

Query: 695  PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTN 750
              + AD   ++Q+ +N+L NA  FTP  G+I+              +   V+D GVG+  
Sbjct: 958  AHLKADSLRLRQVLINLLGNAAKFTPELGEILFRVRQEDRRRGERLISFLVQDNGVGIAE 1017

Query: 751  YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
              L+   +PF Q          GTGLGL ++K+++    G   + STP KG+    + 
Sbjct: 1018 ETLKTLFEPFEQGSTHIARAYGGTGLGLSISKSIIKHMGGDIAVTSTPGKGSAFSFLL 1075



 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/142 (12%), Positives = 46/142 (32%), Gaps = 8/142 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTWY 144
            W  D  G  + ++      +     ++ G+    V        +       ++ +   Y
Sbjct: 718 LWYQDKGGNYQAVNPRFAALVNKTPEEIRGLPASAVFPPEVAARSLENFRAAIEGRTPLY 777

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            + T++  +G +  + +    +P ++   E     G       R  +   A+ K L +  
Sbjct: 778 TEETVYFADGHSENMDVVR--IPQFNAGGEVLALLGVA-----RDVSQRVAVEKELRRIQ 830

Query: 205 SHLHEIKKGHSSVEKEKYDIFS 226
           + L E     +   + K    +
Sbjct: 831 TELQEACATANRANEAKSSFLA 852



 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/247 (8%), Positives = 56/247 (22%), Gaps = 23/247 (9%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D  G L  ++E     IG     ++G    + +          +  L +          
Sbjct: 601 VDLSGKLAYMNEAGLALIGKTLEDVLGKPYAENTIFPPGTAYCPLACLARGTEP------ 654

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVH-----VNRVDNDPRALGKRLDKK 203
                     +  + +      R    +  RG    H           + +   +R    
Sbjct: 655 --------EVLRHEHSGRYYQGRAESLTDGRGVVTGHLVHTADVTAIIEEQKRIERQRAL 706

Query: 204 FSHLHEIKKGHSSVEKEKYDIFS--QQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
              +          + +  +  +   +      +   ++  L        +V        
Sbjct: 707 LETIFVNSPDILWYQDKGGNYQAVNPRFAALVNKTPEEIRGLPASAVFPPEVAARSLENF 766

Query: 262 LTS--EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
             +    + L  +E  +  + +            N   E    L      S     ++  
Sbjct: 767 RAAIEGRTPLYTEETVYFADGHSENMDVVRIPQFNAGGEVLALLGVARDVSQRVAVEKEL 826

Query: 320 NLTPETV 326
                 +
Sbjct: 827 RRIQTEL 833


>gi|288959296|ref|YP_003449637.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
 gi|288911604|dbj|BAI73093.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
          Length = 919

 Score =  348 bits (893), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 100/463 (21%), Positives = 184/463 (39%), Gaps = 23/463 (4%)

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
                      +  V L          S     +  + E +  +                
Sbjct: 160 FAIWTRRRGQPLGAVPLLCFGLLLALVSMSTLLLLPSLELAREVAERTAPALLAIIPVGT 219

Query: 430 QNGIEPEDVDTR--INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
                    + R   ++R++     +   + +  +D I  +  +G +   + +V  + G+
Sbjct: 220 LFLGGLLLREQRHHDSERRLGESEARYRLLADNATDMILELKADGSVRYLSPSVRDILGH 279

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
              +I+       L  +           + S     T         ++   L +   ++ 
Sbjct: 280 DPAEIVGHSPANLLHPDDLDAAALAFAGLKSGSPTVTFTH--RLRHRDGHYLWVESSMRP 337

Query: 548 LPFSSC---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
              S         + D++E K+ + +LS A+  AE  +  KS+FLA +SHEIRTPL  +I
Sbjct: 338 AVGSDGGFVVIGVVRDVTERKRYEGELSAARAEAEAATRVKSEFLASMSHEIRTPLNGVI 397

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           GF++++      P       +Y      +G  +L I+ D+LD SKIE+GK+ L      L
Sbjct: 398 GFADLLLATELTP----EQRQYVALQREAGRGLLAIIGDILDYSKIEAGKLELEERAFDL 453

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG 723
              + +   L+   A++K +L++ S A ++PR +  D   ++QI LN++ NA+ FT  G 
Sbjct: 454 HRLLRDCRDLMSNAASQKGLLLQLSLAGSVPRFVHGDEARIRQILLNLVGNAVKFTERGS 513

Query: 724 QIIISTTHTSNEE----------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
            +++S    +             +   V DTG G+   +     + F Q   S   R  G
Sbjct: 514 -VLVSVGLLTGPGEGGGEGAPVLLRFSVSDTGPGIPPADQANLFQRFSQGDRSTTRRYGG 572

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           TGLGL ++K +V+   G   + S+P  G+      PL   + P
Sbjct: 573 TGLGLIISKQLVELMRGHIGVQSSPGVGSTFWFELPLPVAASP 615



 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/396 (9%), Positives = 98/396 (24%), Gaps = 30/396 (7%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN-TWYGKTTL 149
           A G ++ +S  +   +G+   +++G    ++     +D        LK  + T      L
Sbjct: 262 ADGSVRYLSPSVRDILGHDPAEIVGHSPANLLHPDDLDAAALAFAGLKSGSPTVTFTHRL 321

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
              +G   Y+ ++ +  P    +    GF   G+V                  +      
Sbjct: 322 RHRDGH--YLWVESSMRPAVGSDG---GFVVIGVVRDVTERKRYEGELSAARAEAEAATR 376

Query: 210 IKKGHSSVEKEKYD-----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT- 263
           +K    +    +       +           +  +              L      +L  
Sbjct: 377 VKSEFLASMSHEIRTPLNGVIGFADLLLATELTPEQRQYVALQREAGRGLLAIIGDILDY 436

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
           S+  +   + +    +L++  +          S++                  +   +  
Sbjct: 437 SKIEAGKLELEERAFDLHRLLRDCRDLMSNAASQKGLLLQLSLAGSVPRFVHGDEARIRQ 496

Query: 324 ETVDKCPIPFFVYSHGNLFYAN-----------PSFLLLTKYKSVDDIEIAGGLST--LL 370
             ++           G++  +                +L ++   D            L 
Sbjct: 497 ILLNLVGNAVKFTERGSVLVSVGLLTGPGEGGGEGAPVLLRFSVSDTGPGIPPADQANLF 556

Query: 371 DAPKLSDNNAIKP-----VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
                 D +  +      + L  S +        +         S     +P   A    
Sbjct: 557 QRFSQGDRSTTRRYGGTGLGLIISKQLVELMRGHIGVQSSPGVGSTFWFELPLPVAASPG 616

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
                 G E          R +  E + +  I+ ++
Sbjct: 617 LVASGAGAERGRAAPARGARILLAEDVPMNQIVTSS 652


>gi|229541514|ref|ZP_04430574.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           coagulans 36D1]
 gi|229325934|gb|EEN91609.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           coagulans 36D1]
          Length = 595

 Score =  348 bits (893), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 87/375 (23%), Positives = 176/375 (46%), Gaps = 25/375 (6%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +    +++    QL ++LE    G+ +I   G I+  NRA+ ++ G    +++ K     
Sbjct: 239 KQQMNEIDENEQQLTAVLENMDSGVMLIQTSGRIMLVNRAMEEMTGLSSGELIGKR---H 295

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTM 558
           +E      ++  +   L    R            +E++L   I                +
Sbjct: 296 IEAGKSFGLSQLIDRSLKTGER--FRDEVHLYYPKERILDAHIAPYVGESGELRGVVAVL 353

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
           HD++E ++ +                +S+F+A VSHE++TP+T++ GF+E + +      
Sbjct: 354 HDVTETRRLE--------------QIRSEFVANVSHELKTPVTSVKGFAETLLDGAM--Y 397

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
                 E+   I    + +  +++D+LD+S+IE  ++ L  E +++ + V+E +  ++  
Sbjct: 398 DEATLREFLKIIYDESDRLHRLISDILDLSRIEQHRILLKMEQLNVVDVVAETVQTMRKR 457

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738
             +K++ +          + AD   ++QI LN+++NAI +TP  G+I IS       E+ 
Sbjct: 458 IEKKQLELVL-PQKRHVMMEADKDRLRQILLNLVTNAIAYTPDKGRIEISL-IERENELD 515

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           L V DTG+G++  +L +  + F ++  ++  +  GTGLGL + K +V++  GK  + S  
Sbjct: 516 LIVSDTGIGISEKDLPRIFERFYRVDKARSRQSGGTGLGLAIVKHLVESYHGKIRVESEE 575

Query: 799 AKGTLIEIIFPLYDT 813
            KG+   +  P   T
Sbjct: 576 GKGSTFIVTLPRTQT 590



 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/136 (15%), Positives = 45/136 (33%), Gaps = 10/136 (7%)

Query: 93  GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPI 152
           G +  ++  + +  G  + ++IG R  +      +     I   LK    +  +  L+  
Sbjct: 270 GRIMLVNRAMEEMTGLSSGELIGKRHIEAGKSFGLSQ--LIDRSLKTGERFRDEVHLYYP 327

Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212
           +   L    D    P    + E  G     ++H          +  R +   +  HE+K 
Sbjct: 328 KERIL----DAHIAPYVGESGELRGV--VAVLHDVTETRRLEQI--RSEFVANVSHELKT 379

Query: 213 GHSSVEKEKYDIFSQQ 228
             +SV+     +    
Sbjct: 380 PVTSVKGFAETLLDGA 395



 Score = 43.9 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 35/358 (9%), Positives = 90/358 (25%), Gaps = 48/358 (13%)

Query: 236 MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN 295
             +   ++   +     +            E+S+         + +   +    G L+  
Sbjct: 168 WFSLGLAMAVAFLISGWISYVLARKFTRPIEASIEVSNRLIEKDYDSRVRVNASGELRQL 227

Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKY 354
           +K       +          DE E      ++        + + G +   N +   +T  
Sbjct: 228 TKAINNLAHNLKQQMNE--IDENEQQLTAVLENMDSGVMLIQTSGRIMLVNRAMEEMTGL 285

Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
            S + I                     + +               L+           + 
Sbjct: 286 SSGELIGKRHI-------EAGKSFGLSQLIDRSLKTGERFRDEVHLYYP-----KERILD 333

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI- 473
                   +  E      +  +  +TR     +E    +           +A ++ E   
Sbjct: 334 AHIAPYVGESGELRGVVAVLHDVTETRR----LEQIRSEF----------VANVSHELKT 379

Query: 474 -ILSTNRAVSKLF-GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL--DLRQTLEKIT 529
            + S       L  G   ++   + F   +   +       L  ++S   DL +  +   
Sbjct: 380 PVTSVKGFAETLLDGAMYDEATLREFLKIIYDES-----DRLHRLISDILDLSRIEQHRI 434

Query: 530 LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
           L   ++  ++ +          +    TM    E KQ +  L   + +  +    +  
Sbjct: 435 LLKMEQLNVVDV---------VAETVQTMRKRIEKKQLELVLPQKRHVMMEADKDRLR 483


>gi|86750547|ref|YP_487043.1| histidine kinase [Rhodopseudomonas palustris HaA2]
 gi|86573575|gb|ABD08132.1| histidine kinase [Rhodopseudomonas palustris HaA2]
          Length = 771

 Score =  348 bits (893), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 132/687 (19%), Positives = 260/687 (37%), Gaps = 73/687 (10%)

Query: 181 FGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK- 239
            G+V ++R  +    L   L             H  V      + ++          +  
Sbjct: 90  IGVVRLDRPASI-ERLQNLLPGLIPSWGIAAGRHVIVTSADQRVLARVPGDEGTSAASSF 148

Query: 240 --VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297
             + S T             +  +L S  S+L       ++        +  G++  +  
Sbjct: 149 LDIISATPPLTRSAQQGTITQI-ILPSGASALATLHTVKSLPGQVIVIHEDTGSILRSDA 207

Query: 298 ESFEYL-----------------SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-- 338
                L                             D   +     +++     + +    
Sbjct: 208 ALQITLSATTGFVVLILGFAFHWQSTRAQEGDLINDAVRSRIDTALNRGRCGLWDWDLSR 267

Query: 339 GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398
           G + + + S   L   +S +D+   G ++ L+++  +        ++             
Sbjct: 268 GRI-FWSQSMFTLLGLESRNDLLTFGEVNALVNSDDIDLFAIGDQLIA----GNTDHID- 321

Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458
               ++    + + +            +N    GI  +  + +    +     ++L   +
Sbjct: 322 HSFRMRHANGHWIWLRMRCELSQETQSDNKHLIGIAVDVTEQKSLAERTVEADLRLRDAI 381

Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLTEIL 517
           E   +   + + +  ++  N    +L   P   +     +   +E      +   L    
Sbjct: 382 ETIPEAFVLWDADNRLVLCNSHFQRLHKLPDIAVAPGTSYETVIEVGQMPEIRTRL--CD 439

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA--- 574
           +        +       +   L +    ++      Y     DI+  K  + KL      
Sbjct: 440 NSGGSSPGARTFEAQLADGSWLHIS---ERRTKDGGYVAVGTDITRIKAHEQKLVDNDLR 496

Query: 575 --------------------------------KKIAEKESSHKSDFLARVSHEIRTPLTA 602
                                           K  AE+ +  KS FLA +SHE+RTPL A
Sbjct: 497 LRATVADLKISQYKLERQAIELADLARKYSEEKTRAEEANQTKSKFLANMSHELRTPLNA 556

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           IIGFSE++ +  FG LG+ +Y EY + I  SG+ +L+++ND+LD+SKIE+G+M L  E +
Sbjct: 557 IIGFSEIMGSGMFGTLGSEKYQEYCHDIMTSGHYLLEVINDILDMSKIEAGRMRLDMEEL 616

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
            L   + E++ +V   A  K++ + +   ++IP I+AD R+VKQI +N+LSNA+ FTP G
Sbjct: 617 DLARTLGESLKVVAGRAEHKQLELLSEIEDDIP-IVADRRAVKQILINLLSNAVKFTPDG 675

Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
           G++ + +    N  ++L + D+G+G+    L +  +PF Q+ +       G+GLGL +AK
Sbjct: 676 GRVTVRSRTLPNA-IVLMIADSGIGIAPQSLRRLGQPFEQVESQLSKTYHGSGLGLAIAK 734

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFP 809
           ++   + G   + ST   GT++ +  P
Sbjct: 735 SLTTLHGGSMRLRSTLGAGTVVMVTLP 761


>gi|254478763|ref|ZP_05092131.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Carboxydibrachium pacificum DSM 12653]
 gi|214035275|gb|EEB75981.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Carboxydibrachium pacificum DSM 12653]
          Length = 456

 Score =  348 bits (893), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 90/372 (24%), Positives = 172/372 (46%), Gaps = 28/372 (7%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           R    ++      L +IL++ ++G+   +    IL  N +  K+ G   +D+  +     
Sbjct: 101 RETIEELNDRNATLEAILKSIANGVIAFDNAERILMMNDSAKKILGIEEKDLTGRRVFEV 160

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLT 557
           +     S +      +    +  +         K    L + I     P S     + L 
Sbjct: 161 IRS---SKLYEVFETLRKNKVLSSKSLELNFFNK---HLKVYISPILHPVSHVNLGFVLV 214

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
           + DI+E ++ +                +S+F+A VSHE+RTPLT+I GF E +   R G 
Sbjct: 215 IDDITEMRKLE--------------KMRSEFVANVSHELRTPLTSIRGFIETL---RSGA 257

Query: 618 LGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
           + NP   E + + ID     +  ++ND+L +S+IE+ K     E + +D+ + + + +++
Sbjct: 258 IENPEAREKFLDIIDFEAERLTRLINDILTLSEIENVKEGYPVEKIEMDKEIEDILYIME 317

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
             A +K I ++         I+A+     Q+ +N++ N I +T  GG + +ST     E+
Sbjct: 318 KAAKDKSITLKRDLNCGNLTIIANRDRFHQMMINLIDNGIKYTQEGGFVKVSTRLE-GEK 376

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           +I+ V D G+G+   ++ +  + F ++  S+  +  GTGLGL + K +V++  G+  + S
Sbjct: 377 IIIEVEDNGIGIPKDKIPRLFERFYRVDKSRSRKLGGTGLGLAIVKHIVESMKGEISVES 436

Query: 797 TPAKGTLIEIIF 808
              KGT   I F
Sbjct: 437 EVGKGTKFTIRF 448


>gi|182413629|ref|YP_001818695.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
 gi|177840843|gb|ACB75095.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
          Length = 1085

 Score =  348 bits (893), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 129/819 (15%), Positives = 270/819 (32%), Gaps = 60/819 (7%)

Query: 41  KENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISE 100
            ++   ++        + Q + +     +SE  F        +   +  DA+     +  
Sbjct: 135 AQHRALETAHAQLEELERQHARAEARLRESEERFRLTAASDGIT-LYEQDANLRYVWLYP 193

Query: 101 ELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI-GDLLKRQNTWYGKTTLWPIEGTNLYV 159
           +  +         +G    ++      +       ++L +  +   +       GT  Y 
Sbjct: 194 QHAE-----HGAALGRTDGELLPNAEGERLMQRKQEVLTQGTSCRVEVRAQLPAGTKYY- 247

Query: 160 PIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEK 219
             D    P    +    G  G                 + L        +          
Sbjct: 248 --DTFIAPRRDASGRIVGVAG--TALDVTDRRQREQSRQLLAAIVESSEDAIIALDLEGT 303

Query: 220 EKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTIN 279
                        +   +    S+T     +    + +    + + E     +      +
Sbjct: 304 ITSWNQGSTRLFGYTAAETIGHSVTMLIPRERFHEEPQILERIRAGERIEHYETRRRRKD 363

Query: 280 LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF----FV 335
             +         L+++  E           +L    +          ++          V
Sbjct: 364 GTELEISLSVSPLRDDRGEIVGASKIARDVTLRNRTERNRRFIAMLNERLASSDQPDEIV 423

Query: 336 YSHGNLF-------------YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
            +   L              + + +   L  Y+  +    AG     L     ++     
Sbjct: 424 QTASRLVAQFLGAQDCCFSEWHDETGAALVHYEWGEPGRPAGTGVHRLCEFAPAEWRRQF 483

Query: 383 PVMLYRSDRTCIAASARL------------------HTIQWNRENSLAMTFIPFEKANQF 424
           P     +D T  A  A L                      W     +A       + ++ 
Sbjct: 484 PHEFRIADITREAPDAALVGKCQAAGVGSFATAGVTRKAPWIASIIVASQQPRTWRDDEM 543

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
                        V+   ++  +     QL  I +     +A ++RE  +   N+  ++ 
Sbjct: 544 RLLKAVVARVWPLVERARSETALRTSEEQLRLITDHAPVSLAQVDRERRLKFVNQTYARR 603

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
           FG    D++ +P    +     + +  +L    +    +  E          + +     
Sbjct: 604 FGREPHDLIGQPLKEVVGATAYARIQPHLDGAFAGRHVE-FETEIALPVGGTRWVHAVHT 662

Query: 545 IKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
            +  P  +     + + DI+  K+ + +++ A+  A   +  K DFLA +SHE+RTPL  
Sbjct: 663 PETAPDGTVIGVIVLITDITARKEAERQVALARDQALAAARAKDDFLAALSHELRTPLNP 722

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           ++  +         P            I ++  L   +++DLLD+++I  GK+ L   PV
Sbjct: 723 VLLIASDAAEN---PALAAEVRRDFATIRKNVELEARLIDDLLDVTRITHGKLPLDLRPV 779

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
           S ++ + +A+S+++  A +KRI + T    +   +  D   ++Q+  N+L NA+ FTP+G
Sbjct: 780 SAEQILQDALSVIRPDAEQKRITLVTELTAHRTTVRGDAVRLQQVFWNVLKNAVKFTPAG 839

Query: 723 GQIII-STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP---NSQQIRGEGTGLGL 778
           G+I + S      + + + VRD G+GMT  E+ +    F Q      S   R  G GLGL
Sbjct: 840 GRITVTSANLRGGDTLRVAVRDNGIGMTPAEIARVFDAFTQGDHAVGSNSHRFGGLGLGL 899

Query: 779 PLAKAMVDANMGKFYIFST-PAKGTLIEIIFPLYDTSHP 816
            +++ +V+ + G     S  P +G    I  P+  T+ P
Sbjct: 900 TISRLLVEQHHGDIRAESAGPGQGATFTIELPV--TTQP 936



 Score = 47.3 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/166 (10%), Positives = 48/166 (28%), Gaps = 12/166 (7%)

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII--N 469
           A+      + +     +     + E+++ +  + +  +   +    L A SDGI +   +
Sbjct: 124 ALLHRSRRRRDAQHRALETAHAQLEELERQHARAEARLRESEERFRLTAASDGITLYEQD 183

Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
                +      ++         L +     L       +     E+L+      +    
Sbjct: 184 ANLRYVWLYPQHAE-----HGAALGRTDGELLPNAEGERLMQRKQEVLTQGTSCRV--EV 236

Query: 530 LGSTKEE-KLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLS 572
                   K     I  ++         + T  D+++ +Q +    
Sbjct: 237 RAQLPAGTKYYDTFIAPRRDASGRIVGVAGTALDVTDRRQREQSRQ 282


>gi|303248480|ref|ZP_07334738.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio
           fructosovorans JJ]
 gi|302490100|gb|EFL50020.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio
           fructosovorans JJ]
          Length = 667

 Score =  348 bits (893), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 99/510 (19%), Positives = 202/510 (39%), Gaps = 33/510 (6%)

Query: 316 DEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
                L    V     PF++    G     N +F  L      D +       ++     
Sbjct: 25  QSHALLLDRVVGALSDPFYIKDPQGRFTLVNDAFCTLAGRSREDILGR--DAPSVFPGRA 82

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
            S +     +++           A       +  + + MT                 G+ 
Sbjct: 83  GSPSLKNDAMVMACG----FEDVAEETAFDADDRHRVFMTRKALHVDPDGGR--HVVGLI 136

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
            +  + +  +R +     +   I+E  ++GI ++N     +  N  +  + G   E++  
Sbjct: 137 RDITNRKQAERALFASEARYRRIVETANEGIWVVNEHWRTVYANAVMGFMLGLTPEEMAD 196

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554
           +P + FL      +    L            E+       + + + + I +     +S +
Sbjct: 197 RPVSDFLFPEDRDLHRAMLRRESLPPGGGLYER--RLRRADGQEIWVLIAVSSEYDASGH 254

Query: 555 ----SLTMHDISEWKQEKNKLSHAKKIAEKE-------SSHKSDFLARVSHEIRTPLTAI 603
                    +I+E K+ +  L  ++             S  KS+FLA +SHEIRTPL  +
Sbjct: 255 FTGSVGMFSNITERKRAEESLRLSETRLAAAKEAAETASKAKSEFLANMSHEIRTPLNGL 314

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +G  +++++       +    +       SG  +  ++ D+LD+S++ESGK+ L + P S
Sbjct: 315 LGMLQLLEDTDL----DADQRDCVVTALDSGRRLTRLLTDILDLSRVESGKLALVYAPFS 370

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSG 722
           L E  +   ++      ++ + +  + +  +P  ++ D   ++Q+ LN++ NAI FT +G
Sbjct: 371 LREVFASIQTVFATSLEQRGLTLEPTVSPAVPAMLIGDEGRIRQVLLNLVGNAIKFTRTG 430

Query: 723 GQIIISTTHTSNEE-----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
           G I +    + + E     +IL V DTG+G+   +++   + F Q+  S     +G GLG
Sbjct: 431 G-IFLEAGSSPDPETGKVRLILSVGDTGIGIPREKIKAVFEAFTQVDASNTRIHQGAGLG 489

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           L +   +V    G+ ++ S P  GT +   
Sbjct: 490 LSIVDRLVRLMDGQLWMDSEPGIGTCVMCT 519



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/351 (9%), Positives = 83/351 (23%), Gaps = 13/351 (3%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D  G    +++      G     ++G     V       P+     ++     +      
Sbjct: 46  DPQGRFTLVNDAFCTLAGRSREDILGRDAPSVFPGRAGSPSLKNDAMVMACG-FEDVAEE 104

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
              +  + +             +    G    G++                + ++  + E
Sbjct: 105 TAFDADDRHRVFMTRKALHVDPDG---GRHVVGLIRDITNRKQAERALFASEARYRRIVE 161

Query: 210 IKKGHSSVEKEKYDIFSQQS----PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
                  V  E +      +           +     ++++   +D  L        +  
Sbjct: 162 TANEGIWVVNEHWRTVYANAVMGFMLGLTPEEMADRPVSDFLFPEDRDLHRAMLRRESLP 221

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
                 +      +  +        +  + S      +   ++ +     +E   L+   
Sbjct: 222 PGGGLYERRLRRADGQEIWVLIAVSSEYDASGHFTGSVGMFSNITERKRAEESLRLSETR 281

Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
           +          S      A   FL    ++    +    G+  LL+   L  +     V 
Sbjct: 282 LAAAKEAAETASK-----AKSEFLANMSHEIRTPLNGLLGMLQLLEDTDLDADQRDCVVT 336

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
              S R        +  +       LA+ + PF     F           E
Sbjct: 337 ALDSGRRLTRLLTDILDLSRVESGKLALVYAPFSLREVFASIQTVFATSLE 387



 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/262 (9%), Positives = 64/262 (24%), Gaps = 16/262 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY- 144
            W ++ H      +  +   +G    +M    + D       D    +   + R+ +   
Sbjct: 167 IWVVNEHWRTVYANAVMGFMLGLTPEEMADRPVSDFLFPEDRD----LHRAMLRRESLPP 222

Query: 145 --GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
             G             + + +A    Y  +  F+G    G+              +  + 
Sbjct: 223 GGGLYERRLRRADGQEIWVLIAVSSEYDASGHFTG--SVGMFSNITERKRAEESLRLSET 280

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
           + +   E  +  S  + E     S +   P   +   +  L +     D           
Sbjct: 281 RLAAAKEAAETASKAKSEFLANMSHEIRTPLNGLLGMLQLLEDTDLDADQR-------DC 333

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
                    +      ++   ++ +        +  S   +        +   ++     
Sbjct: 334 VVTALDSGRRLTRLLTDILDLSRVESGKLALVYAPFSLREVFASIQTVFATSLEQRGLTL 393

Query: 323 PETVDKCPIPFFVYSHGNLFYA 344
             TV        +   G +   
Sbjct: 394 EPTVSPAVPAMLIGDEGRIRQV 415


>gi|312110380|ref|YP_003988696.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y4.1MC1]
 gi|311215481|gb|ADP74085.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y4.1MC1]
          Length = 595

 Score =  348 bits (893), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 94/364 (25%), Positives = 158/364 (43%), Gaps = 24/364 (6%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            +  E  QL SIL + +DG+   NR+G IL TN    +          +      +    
Sbjct: 250 ALNQEKEQLASILSSMADGVITFNRDGEILITNPPAERFLQ--AWYFEQGNDAEIIAP-L 306

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
           P  +N     ++  +  Q++E    G T     + L   +            + D++E +
Sbjct: 307 PPQVNELFIRVVREEKEQSIELSLQGRT----WVILMTPLYDKTNVRGAVAVLRDMTEER 362

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           +                  + DF+A VSHE+RTP+  + G+SE I +       +    E
Sbjct: 363 RL--------------DKLRKDFIANVSHELRTPIAMLQGYSEAIIDDI--AATDEEKKE 406

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
            A  I      +  +VNDLLD++++E+G + L++E V L   +   I   Q  A EK+I 
Sbjct: 407 MAKVIYDESLRMGRLVNDLLDLARMEAGHITLNYETVQLAPYIGRIIRKFQGLAKEKQID 466

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +   F N   RI  D   ++Q+  N++ NAI  T   G + I     +   V + V+D+G
Sbjct: 467 LSAEFDNEDIRIRMDPDRIEQVLTNLIDNAIRHTDQNGTVKI-IAEQNGGGVTIHVQDSG 525

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
            G+   +L    + F +   ++     GTGLGL +AK +V+A+ G   + S   +GT   
Sbjct: 526 TGIPEEDLPFVFERFYKADKARTRGRSGTGLGLAIAKNIVEAHKGTISVHSKLHEGTTFT 585

Query: 806 IIFP 809
              P
Sbjct: 586 FHLP 589


>gi|71907402|ref|YP_284989.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
 gi|71847023|gb|AAZ46519.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
          Length = 1169

 Score =  348 bits (893), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 130/782 (16%), Positives = 268/782 (34%), Gaps = 40/782 (5%)

Query: 46  HDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKT 105
               EQ         +  N    +S++              + +D  G    I       
Sbjct: 172 ATKAEQKARDMAADIACKNQQLKESQDALDATLAAIP-DILFEMDEIGTYLAIRTNDEHL 230

Query: 106 IGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAA 165
           +     +++G  + DV         +      KRQ   YG+    P+   + +  + +A 
Sbjct: 231 LAASKNELMGRTVSDVLPPQAAAVVHQALAEAKRQGKSYGRVIKLPLAQGDAWFELSVAR 290

Query: 166 LPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF 225
                        R   I       +      +RL +      E            Y   
Sbjct: 291 KDRTDMEGS----RFIVISRDITSRHRAEEEAQRLSQVIEQSPESIVITDLKTHIIYANS 346

Query: 226 SQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS-LPEQEDFHTINLNQYT 284
           + +    +  ++  +     +         T+     T E+      +      + + Y 
Sbjct: 347 AFKDASGYT-VEEAIGRPAAFLGSGRTPAATKDVMWFTLEQGKVWQGEFINRRKDGSDYL 405

Query: 285 KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG----ENLTPETVDKCPIPFFVYSHGN 340
           ++     L+++S E   Y++ +   +     ++            +       + +   +
Sbjct: 406 EQVIISPLRDSSGEVTHYVAIKRDITTLRQQEQEIARDRKRLINVLSGTGAGPWEWDIDS 465

Query: 341 LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400
                         +S+ +      L          D   ++  +               
Sbjct: 466 GKLILDGASSNLVGRSLAEF-GDDHLEAWFSRIHPEDRLVLEKSLADHLAGDSERFEIEY 524

Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
                ++              ++  + +   G+  +    +  + + +     L S +EA
Sbjct: 525 RIQHADQRWVWIQVRGKVIDWSKDRKPLTMYGVHLDITAHKQAEEQRQYLESILHSAIEA 584

Query: 461 TSDGIAIINREGIILSTNRAVSKLF---------GYPVEDILRKPFTVFLEQNTPSVMNH 511
             +G ++ N    +   N    +L+         G   E+I+R            +    
Sbjct: 585 IGEGFSVYNAADRLTWCNEQYRRLYTISAPAFVPGNSFEEIIRYGIEHGQYPEAQANPEA 644

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571
           ++   L    +       +    + + L +R   ++            DI+E       L
Sbjct: 645 WVQRRLLAHRQSESNF--IQKLADGRWLDVR---ERKTADGSIVGFRVDITE-------L 692

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
            HAK+ AE  +  KS+FLA +SHEIRTP+ +I+G ++++       + +PR  +Y   I 
Sbjct: 693 MHAKQAAEAANRAKSEFLATMSHEIRTPMNSILGMAQIL---CGPDVSDPRSRDYGRVIL 749

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
            SG  +L I+ND+LD++K+ESG++ L   P    +   + ++L +  A  K ++I   + 
Sbjct: 750 ESGKTLLTILNDVLDLAKVESGRVELDPTPWLPQQLAQDILALFRGVAQGKGLIISAEWD 809

Query: 692 -NNIPRILADLRSVKQIALNILSNAIHFTPSGGQ-IIIST--THTSNEEVILRVRDTGVG 747
                  LAD   +KQ+  N++SNA+ FT  G   I IS          +   V DTG+G
Sbjct: 810 GPRTQEYLADGYRLKQMLSNLVSNALKFTAIGSVDIRISEIDRTNDFATLEFSVTDTGIG 869

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           +++ + +   +PF Q   S   R  G+GLGL + + + +   G+  + S   KG+ +   
Sbjct: 870 ISSEKQQGLFQPFTQADGSTTRRYGGSGLGLSIVRHLAELMGGEAGLESEEKKGSRLWFR 929

Query: 808 FP 809
            P
Sbjct: 930 IP 931


>gi|254254553|ref|ZP_04947870.1| hypothetical protein BDAG_03856 [Burkholderia dolosa AUO158]
 gi|124899198|gb|EAY71041.1| hypothetical protein BDAG_03856 [Burkholderia dolosa AUO158]
          Length = 1416

 Score =  348 bits (893), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 114/631 (18%), Positives = 223/631 (35%), Gaps = 27/631 (4%)

Query: 195  ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254
             +G  +                 E+E       +           ++ L          L
Sbjct: 654  RVGMAVRPFRDDQLGSVFLLVVFEEETDVRAEVRRADDANGSNAVLTQLENELHRTKQQL 713

Query: 255  KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA- 313
            +        S E      E+   IN    +  +   T +   +   E L   N    +  
Sbjct: 714  QLTIEQADVSTEELKASNEELQAINEELRSATEELETSKEELQSVNEELITVNAELQAKV 773

Query: 314  -YFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
                +  +     +    I   F+     +    P+ + L    + D       ++  LD
Sbjct: 774  EETAKANDDLQNLIASTGIATIFMDRGMRVKRFTPAAVGLFNLIATDVGRSLLDITHRLD 833

Query: 372  APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
             P+L+ +       L   +R           +  +  N      +P+  ++   +     
Sbjct: 834  YPELAADAVATFESLRLIERE----------VPSSDGNWYLARLLPYRTSDDRID--GAV 881

Query: 432  GIEPEDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVE 490
                +  + R  + K+     +L    E+TS+  I + N +G I++ N+   ++FGY  +
Sbjct: 882  LTLTDITERRRAEAKLRANEARLRLAAESTSNFAIIVQNMDGTIVTWNKGAERVFGYSED 941

Query: 491  DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
            +++ +P  +       S       +   L  R   E+  L    E+      +       
Sbjct: 942  EVIGRPIDMIYLPEDRSHGAVEREQAQRLG-RSDDERWYLRKDGEKIYCGGEVTFINDDT 1000

Query: 551  SSCYSLTMHDISEWKQEKNKLSH-------AKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
               ++    D++E K  + +           ++  E+ +  K +F A +SHE++ PL  I
Sbjct: 1001 FKGFAKIARDLTERKSIEKRQFDQLATERSMREKTEEANRIKDEFFAVLSHELKNPLNLI 1060

Query: 604  IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
               +E + +            +  N I RS      I++DLLD+S+  +GK+ L   P  
Sbjct: 1061 HVKAE-LLSLAPETRELDVVRDAVNAIQRSVMSQAKIIDDLLDMSRARTGKLTLDRVPTD 1119

Query: 664  LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
            L   +   +   +  A  + I +    A+    + AD   V+QI  N+LSNA+ FTP+GG
Sbjct: 1120 LAALLRTLVDACRRDATSRGISVTLDGASAPVVVEADPVRVEQILWNLLSNALKFTPAGG 1179

Query: 724  QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
             + ++     +    + V DTG G+    L K    F Q    +     G G+GL L K 
Sbjct: 1180 TVTLTLAREGDG-ARVDVADTGNGIAPDFLPKIFDMFSQASVPRSRSTHGLGIGLSLVKH 1238

Query: 784  MVDANMGKFYIFS-TPAKGTLIEIIFPLYDT 813
            + + + G+    S     G+   +  P + +
Sbjct: 1239 LAEMHGGRIEAHSDGIGHGSRFRLWLPAHAS 1269



 Score = 47.7 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 26/307 (8%), Positives = 61/307 (19%), Gaps = 32/307 (10%)

Query: 92   HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151
             G +   ++   +  G    ++IG  +  +             +  +R      +     
Sbjct: 922  DGTIVTWNKGAERVFGYSEDEVIGRPIDMIYLPEDRSHGAVEREQAQRLGRSDDERWYLR 981

Query: 152  IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
             +G  +Y          +  +  F GF    I                       + E  
Sbjct: 982  KDGEKIY----CGGEVTFINDDTFKGFAK--IARDLTERKSIEKRQFDQLATERSMRE-- 1033

Query: 212  KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271
                                   R+K++  ++  +       L   K  LL+    +   
Sbjct: 1034 -----------------KTEEANRIKDEFFAVLSHELKNPLNLIHVKAELLSLAPETREL 1076

Query: 272  QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI 331
                  +N  Q +       + +        L      +     D         +     
Sbjct: 1077 DVVRDAVNAIQRSVMSQAKIIDDL-------LDMSRARTGKLTLDRVPTDLAALLRTLVD 1129

Query: 332  PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR 391
                 +                    D + +   L  LL              +    + 
Sbjct: 1130 ACRRDATSRGISVTLDGASAPVVVEADPVRVEQILWNLLSNALKFTPAGGTVTLTLAREG 1189

Query: 392  TCIAASA 398
                   
Sbjct: 1190 DGARVDV 1196


>gi|160896184|ref|YP_001561766.1| PAS/PAC sensor signal transduction histidine kinase [Delftia
           acidovorans SPH-1]
 gi|160361768|gb|ABX33381.1| PAS/PAC sensor signal transduction histidine kinase [Delftia
           acidovorans SPH-1]
          Length = 841

 Score =  348 bits (893), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 102/515 (19%), Positives = 194/515 (37%), Gaps = 16/515 (3%)

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKS 356
              +  + +      A     E+     +       F     G L + N  +   T   S
Sbjct: 327 RRVQQSAQQAMEKAQARIARSEHEMAVLMRSVQELIFRTDSHGRLTFVNARWEQWTGQPS 386

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
            + +     L  ++             +      +  +A        +   E  +     
Sbjct: 387 AEAVGQP--LEGIVHEACRP------QIQALLDPQAKLALRNCQARFRLPDEREILCDIA 438

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476
                 +    +   G   +       +++++ ++     + E T   + + + +  +  
Sbjct: 439 VVPL-LREGRLVGFAGSAVDVTARWKAQQELQTQLAFQHLLFETTPLPMLVTDADQRVAL 497

Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
            N+A    FG     +L          +   +  H   +++       LE          
Sbjct: 498 VNKAWEDFFGRGRYAVLGNEVEGLHSGDHDLLQMHSNQDVMRSGQPMVLEARLPHVDGSY 557

Query: 537 KLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
           + + +     K              D+SE++  ++    A+  AE+    KS+F+A +SH
Sbjct: 558 RDVQISKAAVKNAQGRITGVLSIFVDVSEFRAAEHATHEARDAAEEAFRVKSEFVANMSH 617

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           E+RTPL +I+GF+E+         GN    E  + I  +G  +L +VNDLLD++K+ES  
Sbjct: 618 ELRTPLQSIMGFAEL---GGLRSHGNAAMAEMFSDIHAAGQRMLALVNDLLDVAKLESAV 674

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714
             +H E   L   +   +  ++     K I +R    +      AD    +Q+  N+L+N
Sbjct: 675 GTIHLERTDLRSLIRPVVRELEPQQQHKLIDLRLELDDTPLIAKADPVRFQQVVRNVLAN 734

Query: 715 AIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           AI F+P GG+I +        ++ + V D G G+   EL+K  +PF Q   ++     GT
Sbjct: 735 AIKFSPIGGRIDVQGRIDGQGDICIAVSDQGPGIPPQELDKIFQPFVQSSKTKNGS-GGT 793

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GLGL + + ++DA  G     + PA G +  I  P
Sbjct: 794 GLGLAICRKIIDAMDGTIVASNGPAGGAMFCITLP 828



 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 52/404 (12%), Positives = 116/404 (28%), Gaps = 27/404 (6%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144
             +  D+HG L  ++    +  G  + + +G  L  +           I  LL  Q    
Sbjct: 361 LIFRTDSHGRLTFVNARWEQWTGQPSAEAVGQPLEGIVHEAC---RPQIQALLDPQAKLA 417

Query: 145 GKTTLWPIEGTNLY-VPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
            +         +   +  D+A +P+  R     GF G  +          +   +     
Sbjct: 418 LRNCQARFRLPDEREILCDIAVVPLL-REGRLVGFAGSAV--DVTARWKAQQELQTQLAF 474

Query: 204 FSHLHEIKKGHSSVEKEKYDIF----SQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
              L E       V      +     + +      R     + +   ++   D+L+    
Sbjct: 475 QHLLFETTPLPMLVTDADQRVALVNKAWEDFFGRGRYAVLGNEVEGLHSGDHDLLQMHSN 534

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
             +      +  +     ++ +    +     ++N        LS     S     +   
Sbjct: 535 QDVMRSGQPMVLEARLPHVDGSYRDVQISKAAVKNAQGRITGVLSIFVDVSEFRAAEHAT 594

Query: 320 NLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSV---DDIEIAGGLSTLLDAPKLS 376
           +   +  ++       +   + F AN S  L T  +S+    ++           A   S
Sbjct: 595 HEARDAAEEA------FRVKSEFVANMSHELRTPLQSIMGFAELGGLRSHGNAAMAEMFS 648

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           D +A    ML   +     A         + E +   + I        P+   +      
Sbjct: 649 DIHAAGQRMLALVNDLLDVAKLESAVGTIHLERTDLRSLIRPVVRELEPQQQHKLIDLRL 708

Query: 437 DVDTRINKRKM------EIEVMQLCSILEATSDGIAIINREGII 474
           ++D      K       ++    L + ++ +  G   I+ +G I
Sbjct: 709 ELDDTPLIAKADPVRFQQVVRNVLANAIKFSPIG-GRIDVQGRI 751


>gi|323706107|ref|ZP_08117676.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534551|gb|EGB24333.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 453

 Score =  348 bits (893), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 85/392 (21%), Positives = 174/392 (44%), Gaps = 22/392 (5%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
            +  ++  +         + +   I+  ++     +L +IL++  +G+   +    IL  
Sbjct: 80  IKSIDEIGQLSFAINTMSDKLQETID--ELYDRNAKLEAILKSLVNGVVAFDENERILLI 137

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
           N +   + G      + K     +     S  +  L +I+                K  K
Sbjct: 138 NDSARTMLGIKDNYAVGKHILDVVR---NSKFHDVLEKIIKDKGYNIDNFEIDTFNKHLK 194

Query: 538 LLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
           + S  I+ +       + + ++DI+E ++ +                +SDF+A VSHE+R
Sbjct: 195 IYSSPIVHQVTHKKLGFVVIINDITEIRKLE--------------KIRSDFVANVSHELR 240

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TPLT+I GF E ++      +   R   +   I+     +  ++ND+L +S+IE+ K   
Sbjct: 241 TPLTSIRGFIETLREGAIDNI--ERRDRFLEIIEFEAERLTRLINDILTLSEIENLKEGF 298

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
             E + +DE ++E   +++  A +K I +          I      ++Q+ +N++ N I 
Sbjct: 299 VKEDIVIDEEINEIFYIMEKTAEDKNIKLIKDLNCKDVVIKISKDRLRQMIINLVDNGIK 358

Query: 718 FTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
           +TP GG + ++TT   N  +++ V D+G+G++   + +  + F ++   +  +  GTGLG
Sbjct: 359 YTPEGGYVKVTTTDMENN-IVIEVEDSGIGISKENIPRLFERFYRVDKGRSRKLGGTGLG 417

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           L + K +V++  G   + S   KGT   I+ P
Sbjct: 418 LAIVKHIVESMKGSITVESEVGKGTKFAIVLP 449


>gi|91976421|ref|YP_569080.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas
           palustris BisB5]
 gi|91682877|gb|ABE39179.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas
           palustris BisB5]
          Length = 607

 Score =  348 bits (892), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 114/384 (29%), Positives = 186/384 (48%), Gaps = 17/384 (4%)

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
           + +E  +   +    SD I+  +R G +   + AV  L G P   +        +     
Sbjct: 199 LSVEEERYRLLALHMSDVISRHSRNGAVQFISPAVETLLGLPAARLAGHGLFDRVHVADR 258

Query: 507 SVMNHYLTEILSLDLRQTLEKITLG---STKEEK-----LLSLRIIIKKLP--------F 550
                 L++       +++E             +      + L +  +            
Sbjct: 259 PAYLKALSDAGLGGEGRSVEFRVRREVARDDRGRPTAPEFIWLEMRCRPFAPGTQSSAAG 318

Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
            +     M D+++ K ++  L  A+  A +  + KS FLA +SHE+RTPL AIIGFS++I
Sbjct: 319 ETGVVAVMRDVTDRKLQEQALEQARAEASRADASKSRFLATMSHELRTPLNAIIGFSDMI 378

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
            ++    L   R  EYA  I+ SG  +L +VN +LD+SK+ESG   +  EP +   A+  
Sbjct: 379 LHEDELMLAPERRKEYAQLINDSGQHLLSVVNGILDMSKMESGNFEIVPEPFAPRPALLN 438

Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
             +L+ L A E  I + T    ++P I+ D R+ KQI LN++SNAI FT  GG + +   
Sbjct: 439 CCNLLALKARENGIELVTRAPEDLPEIVGDARAFKQILLNLVSNAIKFTERGGTVSVEAA 498

Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
             +   ++LRVRD GVG+   +L++   PF Q   + Q R EGTGLGL + K++V  + G
Sbjct: 499 VEA-ARLVLRVRDNGVGIAAEDLKRIGDPFFQAGKTYQRRHEGTGLGLSIVKSLVGLHGG 557

Query: 791 KFYIFSTPAKGTLIEIIFPLYDTS 814
           K  + S   +GT++ I  PL  ++
Sbjct: 558 KIDVTSEVDRGTIVTISLPLAPSA 581


>gi|238790320|ref|ZP_04634093.1| PAS/PAC domain [Yersinia frederiksenii ATCC 33641]
 gi|238721584|gb|EEQ13251.1| PAS/PAC domain [Yersinia frederiksenii ATCC 33641]
          Length = 1522

 Score =  348 bits (892), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 112/651 (17%), Positives = 229/651 (35%), Gaps = 36/651 (5%)

Query: 183  IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS 242
            +      D +  AL  +       + ++K+    V      I          +   K+  
Sbjct: 369  LARNMTADLERLALVAKNTSNAVVITDVKRNIVWVNDGFERITGYSQDEVIGKSPGKLLQ 428

Query: 243  LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302
             +       D     +         S   +    T +  +Y  +       N+  E   +
Sbjct: 429  CSNT-----DQSVATEMKTALDAGESFKGEIVNRTKSGQEYWIELEIQPRYNDKNELIGF 483

Query: 303  LSHRNHPSLSAY----FDEGENLTPETVDKCPIPFFV---YSHGNLFYANPSFLLLTKYK 355
            ++  +  S         +         +    +   +      G +   N +F  ++ Y 
Sbjct: 484  MAIESDISERKATYQRLEAALRENNALLSTLNLHGIISTADRDGIITDVNDAFCTISGYS 543

Query: 356  SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
              + I      +  L        +  + +    ++   I+    +     +  +   +  
Sbjct: 544  REELIGQ----TYRLVDSHTHSTDFWQSMWNNIANG--ISWRGEICNKAKDG-SLYWVDT 596

Query: 416  IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
                  N   +      I+ +    +  +  + I   QL    +    GI   N      
Sbjct: 597  TIAPFNNSDGQIERYISIQVDITANKNQQANLIIARNQLVRAADVAELGIWTWNITENTF 656

Query: 476  STNRAVSKLFGYPVEDILRKPF-----TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530
            S +  ++ ++G P E++   P         L       +   +   L  +         +
Sbjct: 657  SFDDRMNDIYGVP-EELHNAPIPLSYWYSCLHPEDIPDVKSAIKTALENESVYRQIFRIV 715

Query: 531  GSTKEEKLLSLRIIIKKLPFSSCYS--LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
                +   +     +++              DI++ ++ ++ L  A++ AE+ +  KS F
Sbjct: 716  VRD-QIHFIQSTGTVERDESGKAMLMMGINRDITQQREAEDILKTAREAAEEANKAKSAF 774

Query: 589  LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
            LA +SHE+RTP+ AI+G   +++        + +  +YA   + +   +L ++ND+LD S
Sbjct: 775  LANMSHELRTPMNAILGMLTLLRRTGL----DRKQADYAVKSEAATRTLLRLLNDILDFS 830

Query: 649  KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQI 707
            KIESGKM L   P  +   + +   ++      K++ +      ++P+ +  D   ++QI
Sbjct: 831  KIESGKMELECIPFDIHVMLRDLAVILSSNLKVKKVEVLFDIDPSLPQFVEGDSMRLQQI 890

Query: 708  ALNILSNAIHFTPSGGQII-ISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIP 764
              N+  NA+ FT  G  ++ I      +  V L   VRDTG+G+     E     F Q  
Sbjct: 891  LTNLGGNALKFTELGEVVLFIKVITQDSHHVTLHFGVRDTGIGIAPENQESIFSGFTQAE 950

Query: 765  NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
             S   R  GTGLGL +++  V    G   + S P +G+L      L   S+
Sbjct: 951  ASTTRRFGGTGLGLVISQRFVALMGGTLTLESQPGQGSLFHFTLTLSLPSY 1001



 Score = 88.5 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 52/448 (11%), Positives = 117/448 (26%), Gaps = 47/448 (10%)

Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH 233
           EF G RGFG +   +       +              +          Y I        +
Sbjct: 111 EFPGVRGFGFIQRVQRSQLNEFIADTRADGAPTFALHQLQDKQHND-LYIIKYVAPAEKN 169

Query: 234 LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293
             ++               +      P L+     +          L     K       
Sbjct: 170 QGVEGLDIGSESVRREAALLAINSGKPTLSGTIHLVQSNVKTPGALLFVPVYKSGSNPTT 229

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGE-----NLTPETVDKCPIPF---FVYSHGNLFYAN 345
              +++       +   ++    +        +  E  D          V+      Y N
Sbjct: 230 IAERQASLLGLLYSPIVIADLLRDIPEFMNGRVDVELFDSLNDLSNKTMVFDADGSKYDN 289

Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405
                       +++      + +     +      + + L  S      A         
Sbjct: 290 --------LIPDEELHDEAIAARIFHNTSVLP-LPGREMTLRVSSTPVFEALT------- 333

Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465
             E  +      F         +             +  R M  ++ +L  + + TS+ +
Sbjct: 334 --ERYVPWLVFAFGLLLSSALALLIRQQVSGRNRAEMLARNMTADLERLALVAKNTSNAV 391

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ-NTPSVMNHYLTEILSLDLRQT 524
            I + +  I+  N    ++ GY  ++++ K     L+  NT   +   +   L     ++
Sbjct: 392 VITDVKRNIVWVNDGFERITGYSQDEVIGKSPGKLLQCSNTDQSVATEMKTALDAG--ES 449

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEK 580
            +   +  TK  +   + + I+           +     DISE K    +L       E 
Sbjct: 450 FKGEIVNRTKSGQEYWIELEIQPRYNDKNELIGFMAIESDISERKATYQRL-------EA 502

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                +  L+ ++      L  II  ++
Sbjct: 503 ALRENNALLSTLN------LHGIISTAD 524



 Score = 80.8 bits (198), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 33/377 (8%), Positives = 97/377 (25%), Gaps = 21/377 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP--NNHIGDLLKRQNTWYGK 146
            D    +  +++   +  G    ++IG     +    + D      +   L    ++ G+
Sbjct: 394 TDVKRNIVWVNDGFERITGYSQDEVIGKSPGKLLQCSNTDQSVATEMKTALDAGESFKGE 453

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                  G      I+L   P Y+   E  GF    I              +   ++ + 
Sbjct: 454 IVNRTKSG--QEYWIELEIQPRYNDKNELIGFM--AIESDISERKATYQRLEAALRENNA 509

Query: 207 LHEIKKGHSSVEKEKYD----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
           L      H  +     D      +          + ++   T                + 
Sbjct: 510 LLSTLNLHGIISTADRDGIITDVNDAFCTISGYSREELIGQTYRLVDSHTHSTDFWQSMW 569

Query: 263 TSEESSLPEQEDF--HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE--- 317
            +  + +  + +      + + Y          N+  +   Y+S +   + +        
Sbjct: 570 NNIANGISWRGEICNKAKDGSLYWVDTTIAPFNNSDGQIERYISIQVDITANKNQQANLI 629

Query: 318 -GENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
              N      D   +  + ++   N F  +     +      +++  A    +   +   
Sbjct: 630 IARNQLVRAADVAELGIWTWNITENTFSFDDRMNDIYGVP--EELHNAPIPLSYWYSCLH 687

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
            ++       +  +             +  +      +      + ++  + M   GI  
Sbjct: 688 PEDIPDVKSAIKTALENESVYRQIFRIVVRD--QIHFIQSTGTVERDESGKAMLMMGINR 745

Query: 436 EDVDTRINKRKMEIEVM 452
           +    R  +  ++    
Sbjct: 746 DITQQREAEDILKTARE 762



 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/251 (10%), Positives = 73/251 (29%), Gaps = 12/251 (4%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKRQNTWYGKTT 148
           D  G + ++++      G    ++IG     V S     D    + + +    +W G+  
Sbjct: 524 DRDGIITDVNDAFCTISGYSREELIGQTYRLVDSHTHSTDFWQSMWNNIANGISWRGEIC 583

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +G+  +V   +A  P  + + +   +    +      + + +A       +     
Sbjct: 584 NKAKDGSLYWVDTTIA--PFNNSDGQIERYISIQV--DITANKNQQANLIIARNQLVRAA 639

Query: 209 EIKKGHSSVEKEKYDIFSQQSP-------PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
           ++ +          + FS           P  L       S      H +D+   +    
Sbjct: 640 DVAELGIWTWNITENTFSFDDRMNDIYGVPEELHNAPIPLSYWYSCLHPEDIPDVKSAIK 699

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
              E  S+  Q     +    +  +      ++ S ++   +      +     ++    
Sbjct: 700 TALENESVYRQIFRIVVRDQIHFIQSTGTVERDESGKAMLMMGINRDITQQREAEDILKT 759

Query: 322 TPETVDKCPIP 332
             E  ++    
Sbjct: 760 AREAAEEANKA 770


>gi|238792323|ref|ZP_04635957.1| PAS/PAC domain [Yersinia intermedia ATCC 29909]
 gi|238728249|gb|EEQ19769.1| PAS/PAC domain [Yersinia intermedia ATCC 29909]
          Length = 1521

 Score =  348 bits (892), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 115/649 (17%), Positives = 231/649 (35%), Gaps = 40/649 (6%)

Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS 242
           +      + +  AL  +       + ++K+    V +    I          +   K+  
Sbjct: 368 LARNMTANLERLALVAKNTSNAVVITDVKRNIVWVNEGFERITGYSLAEALGKSPGKLLQ 427

Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302
            +       D        +      S   +    T +  +Y  +       N+  E   +
Sbjct: 428 CSNT-----DQGVARAMKIALDAGESFKGEIVNRTKSGREYWIELEIQPRYNDKNEPIGF 482

Query: 303 LSHRNHPSLSAY----FDEGENLTPETVDKCPIPFFV---YSHGNLFYANPSFLLLTKYK 355
           ++  +  S         +         +    +   +      G +   N +F  ++ Y 
Sbjct: 483 MAIESDISERKATYQRLEAALRENNALLSTLNLHGIISTADREGIITDVNDAFCNISGYS 542

Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
             + I      +  L           + +    ++   I+    +     +  +   +  
Sbjct: 543 REELIGQ----TYRLVDSHTHSTAFWQSMWNDIANG--ISWRGEICNKAKDG-SLYWVDT 595

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGII 474
                 N   +      I+ +    +  +  + I   QL    +    GI   N  EG  
Sbjct: 596 TIAPFNNSTGQIERYISIQVDITANKNQQTNLIIARNQLVRAADVAELGIWTWNIPEGT- 654

Query: 475 LSTNRAVSKLFGYPVEDILRKPF-----TVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
           LS +  ++ ++G P E++   P         +       +   +   L  +         
Sbjct: 655 LSFDDRMNDIYGVP-EELHNAPIPLTYWYSLVHPEDIPEVKRAIKVALENESVYRQVFRI 713

Query: 530 LGSTKEEKLLSLRIIIKKLPFSSCYS--LTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
           +    +   +     +++              DI++ ++ +N L  A++ AE+ +  KS 
Sbjct: 714 IVRN-QVHFIQSTGTVERDESGKAMLMMGINRDITQQREAENILKTARETAEEANKAKSA 772

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           FLA +SHE+RTP+ AI+G   +++        + +  +YA   + +   +L ++ND+LD 
Sbjct: 773 FLANMSHELRTPMNAILGMLTLLRRTGL----DRKQADYAVKSEAATRTLLHLLNDILDF 828

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQ 706
           SKIESGKM L   P  +   + +   ++      K++ +       +P+ +  D   ++Q
Sbjct: 829 SKIESGKMALECIPFDIHVMLRDLAVILSSNLKVKKVEVLFDIDPALPQFVEGDSMRLQQ 888

Query: 707 IALNILSNAIHFTPSGGQII-ISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQI 763
           I  N+  NA+ FT  G  ++ I      +  V L   VRDTG+G+     E     F Q 
Sbjct: 889 ILTNLGGNALKFTELGEVVLFIKVITQDSHHVTLHFGVRDTGIGIAPENQESIFSGFTQA 948

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL--IEIIFPL 810
             S   R  GTGLGL +++  V    G   + S P +G+L    I  PL
Sbjct: 949 EASTTRRFGGTGLGLVISQRFVALMGGTLALESQPGQGSLFHFTITLPL 997



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 58/448 (12%), Positives = 113/448 (25%), Gaps = 47/448 (10%)

Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH 233
           EF G RGFG +           +              +      +   Y I        +
Sbjct: 110 EFPGVRGFGFIQRVPRSQLNEFITDTRADGAPAFALRQLQDKQHDD-LYIIKYIAPAEKN 168

Query: 234 LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ-YFGTL 292
              +               +      P L+     +          L     K   + T 
Sbjct: 169 QGAEGLDIGSESIRREAALLAINSGKPTLSGTIHLVQSNVKTPGTLLFVPVYKSGTYPTT 228

Query: 293 QNNSKESFEYLSHRNHPSLSAYFDEGE----NLTPETVDKCPIPF---FVYSHGNLFYAN 345
           Q   + S   L +          D  E     +  E  D          ++      Y N
Sbjct: 229 QAERQASLVGLLYSPIVIADLLRDIPEFMNGRVDVELFDSLNDLSNKTMIFDADGSKYGN 288

Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405
                       +        + +     +      + + L  S      A         
Sbjct: 289 --------LIPNEKHHDGAIAARIFHNTSVLP-LPGREMTLRVSSTPVFEAFT------- 332

Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465
             E         F         +             +  R M   + +L  + + TS+ +
Sbjct: 333 --ERYAPWLVFAFGFLLSSALALLIRQQISGRNRAEMLARNMTANLERLALVAKNTSNAV 390

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ-NTPSVMNHYLTEILSLDLRQT 524
            I + +  I+  N    ++ GY + + L K     L+  NT   +   +   L     ++
Sbjct: 391 VITDVKRNIVWVNEGFERITGYSLAEALGKSPGKLLQCSNTDQGVARAMKIALDAG--ES 448

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEK 580
            +   +  TK  +   + + I+           +     DISE K    +L       E 
Sbjct: 449 FKGEIVNRTKSGREYWIELEIQPRYNDKNEPIGFMAIESDISERKATYQRL-------EA 501

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                +  L+ ++      L  II  ++
Sbjct: 502 ALRENNALLSTLN------LHGIISTAD 523



 Score = 78.9 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 35/377 (9%), Positives = 95/377 (25%), Gaps = 21/377 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD--LLKRQNTWYGK 146
            D    +  ++E   +  G    + +G     +    + D          L    ++ G+
Sbjct: 393 TDVKRNIVWVNEGFERITGYSLAEALGKSPGKLLQCSNTDQGVARAMKIALDAGESFKGE 452

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                  G      I+L   P Y+   E  GF    I              +   ++ + 
Sbjct: 453 IVNRTKSGREY--WIELEIQPRYNDKNEPIGFM--AIESDISERKATYQRLEAALRENNA 508

Query: 207 LHEIKK--GHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEKYPLL 262
           L       G  S    +  I        ++    + ++   T                + 
Sbjct: 509 LLSTLNLHGIISTADREGIITDVNDAFCNISGYSREELIGQTYRLVDSHTHSTAFWQSMW 568

Query: 263 TSEESSLPEQEDF--HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE--- 317
               + +  + +      + + Y          N++ +   Y+S +   + +        
Sbjct: 569 NDIANGISWRGEICNKAKDGSLYWVDTTIAPFNNSTGQIERYISIQVDITANKNQQTNLI 628

Query: 318 -GENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
              N      D   +  + ++        +     +      +++  A    T   +   
Sbjct: 629 IARNQLVRAADVAELGIWTWNIPEGTLSFDDRMNDIYGVP--EELHNAPIPLTYWYSLVH 686

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
            ++       +  +             I  N      +      + ++  + M   GI  
Sbjct: 687 PEDIPEVKRAIKVALENESVYRQVFRIIVRN--QVHFIQSTGTVERDESGKAMLMMGINR 744

Query: 436 EDVDTRINKRKMEIEVM 452
           +    R  +  ++    
Sbjct: 745 DITQQREAENILKTARE 761



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 39/336 (11%), Positives = 96/336 (28%), Gaps = 24/336 (7%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKRQNTWYGKTT 148
           D  G + ++++      G    ++IG     V S          + + +    +W G+  
Sbjct: 523 DREGIITDVNDAFCNISGYSREELIGQTYRLVDSHTHSTAFWQSMWNDIANGISWRGEIC 582

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +G+  +V   +A  P  +   +   +    +      + + +        +     
Sbjct: 583 NKAKDGSLYWVDTTIA--PFNNSTGQIERYISIQV--DITANKNQQTNLIIARNQLVRAA 638

Query: 209 EIKKGHSSVEKEKYDIFSQQSP-------PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
           ++ +             S           P  L       +      H +D+ + ++   
Sbjct: 639 DVAELGIWTWNIPEGTLSFDDRMNDIYGVPEELHNAPIPLTYWYSLVHPEDIPEVKRAIK 698

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
           +  E  S+  Q     +    +  +      ++ S ++   +      +     +     
Sbjct: 699 VALENESVYRQVFRIIVRNQVHFIQSTGTVERDESGKAMLMMGINRDITQQREAENILKT 758

Query: 322 TPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
             ET ++               A  +FL    ++    +    G+ TLL    L    A 
Sbjct: 759 ARETAEEANK------------AKSAFLANMSHELRTPMNAILGMLTLLRRTGLDRKQAD 806

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
             V    + RT +     +          +A+  IP
Sbjct: 807 YAVKSEAATRTLLHLLNDILDFSKIESGKMALECIP 842


>gi|239909089|ref|YP_002955831.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239798956|dbj|BAH77945.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 975

 Score =  348 bits (892), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 118/808 (14%), Positives = 245/808 (30%), Gaps = 74/808 (9%)

Query: 50  EQSNFTDQNQESVSNTN--YLDSENTFVFDPIPRTVRFT-WNIDAHGYLKEIS------E 100
            +       + +++     YL +            + F        G+ + +       E
Sbjct: 23  AREPAPALPRPALTEAELAYLAARPVLRVGVGQGQIPFQDVVTSPQGHPRYVGLAADYLE 82

Query: 101 ELPKTIGNYAFKMIGMRLC---DVSDILHID------PNNHIGDLLKRQNTWYGKTTLWP 151
            L   +G       G+      +++    ID              L     +  +     
Sbjct: 83  TLSAMLGVALEPSFGISYARALELAQTGGIDLFACISDTPARRAYLHMTTPYASQPYAMI 142

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
               +  V        +              + +             R   +F       
Sbjct: 143 TRAGSDAVW------SVPDLAGRVVAVSPSYVAY---ERLQQEYPALRARFEFKRNAPET 193

Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP---LLTSEESS 268
               +  +      +  +    +R     +          D       P   L    + +
Sbjct: 194 LQAVADGQADACFLNVVAATSIIREYGLTNLRITAVMAWPDNALCMASPDPVLAGIIQKA 253

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH-------------------- 308
           L        I L            ++  +    +L+                        
Sbjct: 254 LDAIPVDRRIALAARWYDAGPLPAKSYVRPIQLWLAAGAVALVALCVWWWRRLRREVARR 313

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLS 367
            +               ++       V     ++   N +            +       
Sbjct: 314 EATERDLCRHRETLEAVLNATTDAILVLDEAYHVVMVNRTGAERFGLAVEAMLGQG---- 369

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
             +     +   A +     ++  T             ++          +       + 
Sbjct: 370 --ILELTDAPVAASRRQHYRQAQATGRPVRFT------DKRAGRVYENTIYPIPALAGDR 421

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFG 486
                   +  +     + +     +L +I   +   + +    +G +L  N A S   G
Sbjct: 422 PRLAIYARDVTEQIAADQAVRQSQERLANIFRLSPVIVTVTTLPDGRLLDVNEAFSAYSG 481

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
           +  E+++ +  T       P   +     +      + LE              L     
Sbjct: 482 FSREEVIDRTPTELGLWAHPGDRDRIFRAVERDGQVRNLELSMRMRDGRLATFLLSCTPM 541

Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
           +     C    + DIS  K  +  L  AK+ AE  +  KS FL+ +SHEIRTP+  I+G 
Sbjct: 542 EAYGRHCLLSVLVDISGRKTMEEALRLAKESAEAANKAKSRFLSTMSHEIRTPMNTILGM 601

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
            +V++          R  E+   ++ +G  ++ ++ D+L++SKIESG + L        E
Sbjct: 602 VDVLRGTELSG----RQQEFLRTLEVAGESLMALLTDILELSKIESGVLELAEAAYDPLE 657

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQI 725
              + ++L+   A  K + +R     + P + + D   ++QI +N++ NAI FT +G ++
Sbjct: 658 LAGQVVALLSPQAQAKGLTLRLEAGKDAPRQAVGDPDRIRQILINLVGNAIKFTAAG-EV 716

Query: 726 IISTTHTS----NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
            +  +        EE++  V DTG+G+   + E   KPF Q+ +S      GTGLGL + 
Sbjct: 717 ALKLSLLPARLSREELLFAVSDTGIGIPPEKREAIFKPFTQVDSSTTRAYGGTGLGLAIC 776

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             +VD   G+ ++ S P  G++     P
Sbjct: 777 ALLVDGMNGRLWLESEPGAGSVFYCALP 804


>gi|152996044|ref|YP_001340879.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1]
 gi|150836968|gb|ABR70944.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1]
          Length = 1258

 Score =  348 bits (892), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 115/535 (21%), Positives = 212/535 (39%), Gaps = 35/535 (6%)

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEI 362
                        E +       D  P           +   NP+F  L  Y+    ++ 
Sbjct: 310 DRTVQIQYENELREQKVFFKSLFDNAPEAIIHVGANREIKMLNPAFTELFGYR----LDE 365

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
             G +T +   + SD           +D   +    R+       +   A T       N
Sbjct: 366 LQGQTTQVLYAEESDFIKRGQAY--NADMKDVLNRYRVSYKSKQGKIFHAETIGSII-RN 422

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
                        +  +    ++KM    ++L    +A   G+   + +   L  +  + 
Sbjct: 423 ADGNLGGYIAHIRDVTERLAVEQKMIDTNLRLSIAADAAGIGVWEFDLQDSTLQWDDWMY 482

Query: 483 KLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEILSLD-----------LRQTLEKIT 529
           +L+G+  ++     + +   +     + +    + +               + + L+   
Sbjct: 483 RLYGFAEDERTSPLQVWDDCVYTEDKNRLAEVFSSLERSGAYFTTKEDASHISKELDFDF 542

Query: 530 LGSTKEEKLLSL----RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
               K+ ++  L     I+  K   +S       DI+  K+ +  L +A   A   S  K
Sbjct: 543 RIKRKDGQVRYLKSNGAIVFNKKGQASHLVGVNMDITSRKETEVLLRNASDQAVAASKAK 602

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
           SDFLA +SHEIRTPL  ++G +E++   +     NP      N +  SG  +L ++NDLL
Sbjct: 603 SDFLATMSHEIRTPLNGVLGMAELLSGTKL----NPEQTTQLNVLKESGEGLLGLINDLL 658

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSV 704
           D SKIE+G +++     +L++A+ + I L+ + A+EK I +   +    PR ++ D+  +
Sbjct: 659 DFSKIEAGHISIERVDFNLEKAIYDVIRLLMMRADEKGIDLLVEYDEVCPRFLVGDVFRI 718

Query: 705 KQIALNILSNAIHFTPSGGQIIISTT--HTSNEEV--ILRVRDTGVGMTNYELEKAMKPF 760
           KQI  N++SNAI FT  G  +++S       +  V   + V DTGVG+ +         F
Sbjct: 719 KQILTNLISNAIKFTSIG-HVLVSVKGIVDKHGMVSITISVADTGVGIADKVQPHLFTAF 777

Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            Q  +S   +  GTGLGL + K ++    G   + S    G+   + F L ++  
Sbjct: 778 VQADSSTTRKFGGTGLGLAITKQLIGLMNGNISLSSKLNVGSTFTVTFALPESHA 832


>gi|94267625|ref|ZP_01290943.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
 gi|93451924|gb|EAT02648.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
          Length = 483

 Score =  348 bits (892), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 90/418 (21%), Positives = 181/418 (43%), Gaps = 18/418 (4%)

Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465
             +  L    +          +    G   +    R  ++++     +L SIL++   G+
Sbjct: 30  RGQWWLLPLALLLGLLPAAYLDHLLAGFRRDSEQQRQTEQRLRDSEGRLSSILQSIGAGV 89

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE---QNTPSVMNHYLTEILSLDLR 522
              +++G +   N    +L G+ + D L +P    L    + +   +   L ++L     
Sbjct: 90  IATDQQGRLAFLNPVAERLTGWDLVDALNRPVGEVLALTDEESGQPLPSPLKQVLEDGEI 149

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL---TMHDISEWKQEKNKLSHAKKIAE 579
               +  + + +  +   +   +  +   S          D    ++ ++ L  AK+ AE
Sbjct: 150 IDWRERLMLTPRRGEPCPVACTVAPIASFSGIIGAVFVFRDTRREREIQSHLLAAKEQAE 209

Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639
                K +FLA +SHEIRTPLTA++G ++++   R     +    +Y      +G  +LD
Sbjct: 210 GALRAKGEFLAGMSHEIRTPLTAVLGMADLLDKTRL----DSHQRQYVAASRAAGENLLD 265

Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RIL 698
           ++N +LD+SKIE+G++ +      LD+ V +   ++ L A ++ +      +   P  ++
Sbjct: 266 LINGILDLSKIEAGRLEVESVEFDLDQLVRQTCEIMNLRARQQGLEFVHHSSCAGPCLVM 325

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS------NEEVILRVRDTGVGMTNYE 752
            D   ++Q+ +N++ NAI FT  G ++++                   V DTG+G+   +
Sbjct: 326 GDPTRIRQVLVNLIGNAIKFTEEG-RVMVELACLPAAPPYPGPFFRCTVSDTGIGIPAAK 384

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            E   + F Q  +S   R  GTGLGL +++ +V    G+  + S    G+   +  PL
Sbjct: 385 QEMIFEDFAQADSSMTRRYGGTGLGLAISRKLVTMMGGQISLVSREGGGSTFTMEIPL 442



 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/158 (14%), Positives = 37/158 (23%), Gaps = 4/158 (2%)

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEI 362
                        + E      +             G L + NP    LT +  VD +  
Sbjct: 60  DSEQQRQTEQRLRDSEGRLSSILQSIGAGVIATDQQGRLAFLNPVAERLTGWDLVDALNR 119

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
             G   L    + S      P+     D   I    RL       E    +       A+
Sbjct: 120 PVG-EVLALTDEESGQPLPSPLKQVLEDGEIIDWRERLMLTPRRGEP-CPVACTVAPIAS 177

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
                +    +  +    R  +  +     Q    L A
Sbjct: 178 FSG-IIGAVFVFRDTRREREIQSHLLAAKEQAEGALRA 214



 Score = 41.9 bits (97), Expect = 0.44,   Method: Composition-based stats.
 Identities = 18/144 (12%), Positives = 42/144 (29%), Gaps = 13/144 (9%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP----NNHIGDLLKRQNT-- 142
            D  G L  ++    +  G      +   + +V  +   +      + +  +L+      
Sbjct: 92  TDQQGRLAFLNPVAERLTGWDLVDALNRPVGEVLALTDEESGQPLPSPLKQVLEDGEIID 151

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRG-FGIVHVNRVDNDPRALGKRLD 201
           W  +  L P  G    V   +A +        FSG  G   +    R + + ++      
Sbjct: 152 WRERLMLTPRRGEPCPVACTVAPIA------SFSGIIGAVFVFRDTRREREIQSHLLAAK 205

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIF 225
           ++       K    +    +    
Sbjct: 206 EQAEGALRAKGEFLAGMSHEIRTP 229


>gi|282897782|ref|ZP_06305781.1| Multi-sensor Signal Transduction Histidine Kinase [Raphidiopsis
           brookii D9]
 gi|281197461|gb|EFA72358.1| Multi-sensor Signal Transduction Histidine Kinase [Raphidiopsis
           brookii D9]
          Length = 421

 Score =  348 bits (892), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 95/385 (24%), Positives = 177/385 (45%), Gaps = 22/385 (5%)

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
              I  +  D +  +  +     +  +  E    G+A+++  G  +  NRA+ ++ GY  
Sbjct: 53  VISIIKDITDRKKIEENLRQSEERFRTAFENAGSGMALVSLNGYFIKVNRALCQILGYDS 112

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
            D+L K  T  +             + +S       +       K  K++ + + +  L 
Sbjct: 113 PDLLTKKVTEIITGEELLKDFDLAYQFIS-GQITNYQVEKSCLHKSGKIIWVLLNVSLLS 171

Query: 550 FSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
             +     +   + DISE  + +                K++F++ VSHE+RTPLTAI G
Sbjct: 172 DVNGKPLHFIWQIQDISEQHEVE--------------QLKNEFVSVVSHELRTPLTAIKG 217

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
             E++              +       +   +L +VN++L++  ++SGKM L+ E   ++
Sbjct: 218 ALEILATGILVDEPRE-AEQMLKIAVSNSERLLRLVNNILNLEMLDSGKMRLNLELCDIN 276

Query: 666 EAVSEAISLVQLYANEKRILIRTS-FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724
             V +A+  VQ  A +KR+ I  S    +  +ILAD  ++ Q+  N+LSN++ F+ +G +
Sbjct: 277 IMVKQAMETVQPIAQQKRMEISYSTLDVHNSKILADEETIIQVLTNLLSNSVKFSHAGTK 336

Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
           + I T    ++E+I+ V+D G G+   +L+   + F Q+  S   +  GTGLGL + K +
Sbjct: 337 VEIYTKM-GDKEIIIAVKDYGKGIPADKLKTIFERFEQVDVSDARQNGGTGLGLAICKNI 395

Query: 785 VDANMGKFYIFSTPAKGTLIEIIFP 809
           V+ + GK +I ST   G+      P
Sbjct: 396 VEKHQGKIWIESTLDSGSTFYFTLP 420



 Score = 45.4 bits (106), Expect = 0.036,   Method: Composition-based stats.
 Identities = 8/108 (7%), Positives = 35/108 (32%), Gaps = 2/108 (1%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +  +GY  +++  L + +G  +  ++  ++ ++     +  +  +            +  
Sbjct: 91  VSLNGYFIKVNRALCQILGYDSPDLLTKKVTEIITGEELLKDFDLAYQFISGQITNYQVE 150

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRAL 196
              +  +   + + L    +   N +   F     +      ++   L
Sbjct: 151 KSCLHKSGKIIWVLLNVSLLSDVNGKPLHFIW--QIQDISEQHEVEQL 196



 Score = 41.9 bits (97), Expect = 0.42,   Method: Composition-based stats.
 Identities = 13/80 (16%), Positives = 30/80 (37%)

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH 573
            ++ +    + LE   L  + E K   +      +    C    + DI++ K+ +  L  
Sbjct: 13  EQLKNQGYVRNLEFDWLIKSGEVKTSLVSCEPIVIDNKDCVISIIKDITDRKKIEENLRQ 72

Query: 574 AKKIAEKESSHKSDFLARVS 593
           +++       +    +A VS
Sbjct: 73  SEERFRTAFENAGSGMALVS 92


>gi|239908403|ref|YP_002955145.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239798270|dbj|BAH77259.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 855

 Score =  348 bits (892), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 111/694 (15%), Positives = 218/694 (31%), Gaps = 84/694 (12%)

Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE 245
                 +   L     K             + +    DI +  +        +   +   
Sbjct: 3   PTPRPENREPLTAEHAKILLAAAGDIAAILAPDGRIQDIGAPGAALLGPDEAHLAGTDFM 62

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTI--NLNQYTKKQYFGTLQNNSKESFEYL 303
            +    D     ++     +  ++P +     +       +      +L          L
Sbjct: 63  EHLAPGDGRDRLRHAFAAIQGGAVPPKPMAADLLTAGGSISLFWSMTSLPGPGGRPKAVL 122

Query: 304 -----SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKS 356
                   + P L+    E E       +      F+     G    AN   + L  Y  
Sbjct: 123 ISGRLPVSSCPPLAEGACESEADYRAVFNAASDAIFIQDAATGIFLDANDRAVSLYGYAR 182

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
            +       L  L      S            +     A   RL       +        
Sbjct: 183 DE-------LRRLDPERLSSGFPPYTLADALINLGQAAAGQPRLFDWLARDKAGRLFWVE 235

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG-IIL 475
              +            +  +  + +  +R +     +   + EA  +   + + +   I 
Sbjct: 236 VSLRGMDTGRPGRVIAVVRDISERKTTERALRESEKKFRQLAEAIGEVFWLGSPDWKRIY 295

Query: 476 STNRAVSKLFGYPVEDILRKPFTVF--LEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
             + A  +L+G+  + +   P +    +  +    +  Y+ ++    LR           
Sbjct: 296 YISPAYERLWGHTTKSLYDAPMSWLDAVHPDDRDRVLRYIADLAGRPLRPGQFPEYRIVR 355

Query: 534 KEEKLLSLRIIIKKLPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESSHKS--- 586
            +  +  +   I  +   +           DI++    +  L    +  E     ++   
Sbjct: 356 PDGSMRWIAARIFPVIDDAGVVYRVAGIAEDITDRVLSRQDLERVNERLEDMVRERTRTL 415

Query: 587 ------------------------------------DFLARVSHEIRTPLTAIIGFSEVI 610
                                               +FLA +SHEIRTP+  I+G ++V+
Sbjct: 416 NRMNQELIHEVTERREAEAAMAQAKEAAEAASQAKSEFLANMSHEIRTPMNGILGMAQVL 475

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
                    +     Y   I+ S   +L ++ND+LD SKIE+ ++ L  EP SL   +S 
Sbjct: 476 GQTDL----DAAQASYLRDIEDSAASLLKLINDILDFSKIEADRLELAQEPFSLRGLLSL 531

Query: 671 AISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
             + + + A EK + +    A   P IL  D   ++Q+ +N++ NAI FT  GG I+IS 
Sbjct: 532 IEASLGVLAREKGLGLSVEVAPETPDILIGDADRLRQVLVNLVGNAIKFTTRGG-IVISA 590

Query: 730 THTSNE----------------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
                +                E++  V DTG+G+   +  +  + F Q   S   R  G
Sbjct: 591 RPAEPDPDVTLPGEAETTEATREILFSVSDTGIGIRPEDAGRIFEAFTQADGSYTRRFGG 650

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           TGLGL +++ +     G   + S P +G+   + 
Sbjct: 651 TGLGLAISRRLARLMGGDISLDSEPGQGSTFTLS 684



 Score = 88.2 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 40/289 (13%), Positives = 79/289 (27%), Gaps = 11/289 (3%)

Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIE 361
             + R         +  + L     D   I   +   G +         L        + 
Sbjct: 2   PPTPRPENREPLTAEHAKILLAAAGD---IAAILAPDGRIQDIGAPGAALLG-PDEAHLA 57

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
               +  L         + ++                    +      SL  +       
Sbjct: 58  GTDFMEHL---APGDGRDRLRHAFAAIQGGAVPPKPMAADLLTAGGSISLFWSMTSLPGP 114

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRA 480
              P+ +  +G  P      + +   E E     ++  A SD I I +   GI L  N  
Sbjct: 115 GGRPKAVLISGRLPVSSCPPLAEGACESEAD-YRAVFNAASDAIFIQDAATGIFLDANDR 173

Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
              L+GY  +++ R           P  +   L  +      Q      L   K  +L  
Sbjct: 174 AVSLYGYARDELRRLDPERLSSGFPPYTLADALINLGQAAAGQPRLFDWLARDKAGRLFW 233

Query: 541 LRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
           + + ++ +           + DISE K  +  L  ++K   + +    +
Sbjct: 234 VEVSLRGMDTGRPGRVIAVVRDISERKTTERALRESEKKFRQLAEAIGE 282


>gi|119484858|ref|ZP_01619340.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
 gi|119457676|gb|EAW38800.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
          Length = 650

 Score =  348 bits (892), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 96/495 (19%), Positives = 192/495 (38%), Gaps = 29/495 (5%)

Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA--------S 397
             F  + +    +++        +L    L   + I  + + +     +           
Sbjct: 28  AEFTCVNRCSEFEEVLKTLFPDLILSDYVLPSFDGIAALEIAQQICPEVPFIMVSGMLGE 87

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
            R             +           P          E  +    +  +      L +I
Sbjct: 88  ERAIEALKQGATDYVLK---QRLERLVPSVKRALRESQERQERLRVEEALRQTDDLLKAI 144

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
           ++A+   I  +N E  +++ N A  +++G+  ++++ +     +        N    + L
Sbjct: 145 VDASPVAIITLNLEKKVITWNIAAERIYGWQSQEVIDQ-LLPLIPPEEDEQFNRLFQQAL 203

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSH 573
               R           K   L+ + I +  L  +        +T  DI+  K+ + +  +
Sbjct: 204 QNYTRT--NYEFQHRGKNNDLIEISISLAPLHNAEGNVCGVVMTAVDITTRKRIEAERFN 261

Query: 574 AKKIAEKESSH-------KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
             +  +   +        K +FLA +SHE+RTPL +I+G+  +I+  +       +    
Sbjct: 262 LLQREQSARAEAEAANRIKDEFLAVLSHELRTPLNSILGWITLIQRGKLNQTTLEQA--- 318

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
              I+R+ ++   ++ DLLDIS+I  G++NL+   V+L E +   +  V+  A  K I I
Sbjct: 319 LEVIERNASIQTQLIEDLLDISRISRGQLNLNINSVNLVELIQTTVDTVRPAAEAKSIAI 378

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
                + I  I  D   ++Q+  N+ SNAI FTP  G + I      +    ++V D+G+
Sbjct: 379 ELILDHRINIISGDGNRLQQVFWNLFSNAIKFTPKEGSVTIKLNKVEDSYAQIKVIDSGI 438

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIE 805
           G+    L    + F Q   S      G GLGL +++ +V+ + G   + S    KG++  
Sbjct: 439 GIEPNFLPYVFEYFRQADASTTRSQGGLGLGLAISRHLVELHGGTIDVESEGKGKGSVFI 498

Query: 806 IIFPLYDTSHPHDCI 820
           ++ P+       D I
Sbjct: 499 VMLPIRPIQFDQDQI 513



 Score = 46.9 bits (110), Expect = 0.016,   Method: Composition-based stats.
 Identities = 15/190 (7%), Positives = 46/190 (24%), Gaps = 17/190 (8%)

Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN----HPSLSAYFDEGENLTPETV 326
            +E          T       L+         L           +     + ++L    V
Sbjct: 86  GEERAIEALKQGATDYVLKQRLERLVPSVKRALRESQERQERLRVEEALRQTDDLLKAIV 145

Query: 327 DKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
           D  P+    +     +   N +   +  ++S + I+           P +      +   
Sbjct: 146 DASPVAIITLNLEKKVITWNIAAERIYGWQSQEVIDQLL--------PLIPPEEDEQFNR 197

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
           L++        +      +    + + ++       N             +    +  + 
Sbjct: 198 LFQQALQNYTRTNYEFQHRGKNNDLIEISISLAPLHNAEGNVCGVVMTAVDITTRKRIEA 257

Query: 446 K----MEIEV 451
           +    ++ E 
Sbjct: 258 ERFNLLQREQ 267


>gi|256831239|ref|YP_003159967.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256580415|gb|ACU91551.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 1078

 Score =  348 bits (892), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 122/531 (22%), Positives = 206/531 (38%), Gaps = 35/531 (6%)

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAG 364
                  A   E E+     V+       + S  G +  AN     LT     D +    
Sbjct: 427 TERQWAEAALGESESRYRALVELAVDGILLGSHEGVITGANECMCDLTGLTREDMLG--M 484

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
            +S L   P+  +    +   L   D            I+ +    L       E  ++ 
Sbjct: 485 HISALPFKPESLEREPFRFEQLEHGD----IVQKERVLIRPDGTEIL------VEMRSKM 534

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA-----IIN-REGIILSTN 478
             +     I  +    R  +  +     +L  + +    G+       ++ RE      +
Sbjct: 535 MPDGTYQSIFRDVTARRKAEAALRESEERLRMLSDNLPGGLVYQIEVGLDGRERRFTYIS 594

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
             V  L G  V+D+L     ++ +            E  +L                 K+
Sbjct: 595 GGVESLHGLSVQDVLDDASVLYAQLPEKDGEQLAEREAEALSAMSLFHAEARFRLASGKV 654

Query: 539 LS--LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
               L    +++     +     DI+E K+ +  L  AK+ AE  +  K++FLA +SHEI
Sbjct: 655 RWSYLASAPRRIGDRVVWDGVEIDITELKKTEAALLEAKETAETANRVKTEFLANMSHEI 714

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTPL  I+G  ++++     P       +Y      S   +  ++ D+LDIS+IE+GKM+
Sbjct: 715 RTPLNGILGMMQLLRQTSLEP----EQEKYVELSITSAARLTRLLADILDISRIEAGKMS 770

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNA 715
           L   P S  E V   + L  + A EK + +R +    +P +L  D   V+QI  N++ NA
Sbjct: 771 LFNAPFSAAELVDSVVELFAVPAREKGLRLRCAIHPGLPPLLVGDEARVRQILFNLVGNA 830

Query: 716 IHFTPSGGQIIISTTHTSNE-----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           + +T  G  I +       +      + +RV DTGVG+  + L    +PF Q+  S    
Sbjct: 831 LKYTEQG-DITLELFARDADLCRSECMCIRVVDTGVGIPAHMLSGVFEPFRQVEGSHTRS 889

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH---PHD 818
            EG GLGL + + +V+   G+  + S P  GT + +  PL   S    P D
Sbjct: 890 YEGAGLGLAIVQRLVELMQGEISVQSEPGAGTAVLVSLPLRAASEYCIPQD 940



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 40/378 (10%), Positives = 100/378 (26%), Gaps = 13/378 (3%)

Query: 214 HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE 273
             +  +  YD          + +     +            K           +    + 
Sbjct: 195 ALAASRPVYDSHGTALGVVSVDVFLSQLTRFLQQLRIGSTGKAFILDRTGVLVAGSGTEP 254

Query: 274 DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF 333
            F         ++      ++    +          +L     E             +  
Sbjct: 255 LFVPARGGNPGRRILGTQSRDLLVHAASQALSSRFGNLEKISAEHHFEFSGLGQHLLVTV 314

Query: 334 FVYSH----GNLFYA----NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
                      L       +     +     V  I + G L+  L    L     +KP+ 
Sbjct: 315 SPLRDPLGIDWLIVVAVPESDFMARIGDNARVTAIIMLGVLALSLLVGTLLARRIVKPIS 374

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
                   +A  + L  I          +            +    G++ E  + +  + 
Sbjct: 375 GLEEAAGRLAGDSSLEMIGETSRFVEVQSLTRSFNRMARQLSQTMQGMKRELTERQWAEA 434

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF-LEQN 504
            +     +  +++E   DGI + + EG+I   N  +  L G   ED+L    +    +  
Sbjct: 435 ALGESESRYRALVELAVDGILLGSHEGVITGANECMCDLTGLTREDMLGMHISALPFKPE 494

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564
           +         ++   D    ++K  +    +   + + +   K+     Y     D++  
Sbjct: 495 SLEREPFRFEQLEHGD---IVQKERVLIRPDGTEILVEMR-SKMMPDGTYQSIFRDVTAR 550

Query: 565 KQEKNKLSHAKKIAEKES 582
           ++ +  L  +++     S
Sbjct: 551 RKAEAALRESEERLRMLS 568



 Score = 62.7 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/252 (10%), Positives = 62/252 (24%), Gaps = 24/252 (9%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSD-ILHIDPNNHIGDLLKRQNTWYGKTTLW 150
            G +   +E +    G     M+GM +  +      ++      + L+  +    +  L 
Sbjct: 460 EGVITGANECMCDLTGLTREDMLGMHISALPFKPESLEREPFRFEQLEHGDIVQKERVLI 519

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
             +GT + V +    +P    +  +       I           A  +  +++   L + 
Sbjct: 520 RPDGTEILVEMRSKMMP----DGTYQ-----SIFRDVTARRKAEAALRESEERLRMLSDN 570

Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT------------EYYAHKDDVLKTEK 258
             G    + E      ++           +  L+                 KD     E+
Sbjct: 571 LPGGLVYQIEVGLDGRERRFTYISGGVESLHGLSVQDVLDDASVLYAQLPEKDGEQLAER 630

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
                S  S    +  F   +                  +   +       +     +  
Sbjct: 631 EAEALSAMSLFHAEARFRLASGKVRWSYLASAP--RRIGDRVVWDGVEIDITELKKTEAA 688

Query: 319 ENLTPETVDKCP 330
                ET +   
Sbjct: 689 LLEAKETAETAN 700



 Score = 41.6 bits (96), Expect = 0.52,   Method: Composition-based stats.
 Identities = 30/289 (10%), Positives = 61/289 (21%), Gaps = 19/289 (6%)

Query: 51  QSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNI-----DAHGYLKEISEELPKT 105
           QS F D      +     +SE               + I             IS  +   
Sbjct: 541 QSIFRDVTARRKAEAALRESEERLRMLSDNLPGGLVYQIEVGLDGRERRFTYISGGVESL 600

Query: 106 IGNYAFKMIGMR---LCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPID 162
            G     ++         + +           + L   + ++ +       G        
Sbjct: 601 HGLSVQDVLDDASVLYAQLPEKDGEQLAEREAEALSAMSLFHAEARFRLASG--KVRWSY 658

Query: 163 LAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKY 222
           LA+ P    +R        G+           A      +     + +K    +    + 
Sbjct: 659 LASAPRRIGDRVVWD----GVEIDITELKKTEAALLEAKETAETANRVKTEFLANMSHEI 714

Query: 223 D-----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHT 277
                 I           ++ +     E        L      +L        +   F+ 
Sbjct: 715 RTPLNGILGMMQLLRQTSLEPEQEKYVELSITSAARLTRLLADILDISRIEAGKMSLFNA 774

Query: 278 INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
                             ++E    L    HP L       E    + +
Sbjct: 775 PFSAAELVDSVVELFAVPAREKGLRLRCAIHPGLPPLLVGDEARVRQIL 823


>gi|304317189|ref|YP_003852334.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302778691|gb|ADL69250.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 453

 Score =  348 bits (892), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 82/386 (21%), Positives = 174/386 (45%), Gaps = 22/386 (5%)

Query: 426 ENMPQNGIEPEDVDTRINKR--KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           + + Q       +  ++ +   ++     +L +IL+   +G+   +    IL  N +   
Sbjct: 84  DEIGQLSSAINIMSDKLQETIDELYDRNAKLEAILKGLINGVIAFDENEKILLINDSARA 143

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +       ++ K     +        +  L +I+                K  K+ S  I
Sbjct: 144 ILDIKESSVVGKHILDVVRNT---KFHDILEKIIKNKGYNIDNLEINTFNKYLKIYSSPI 200

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
           + +       + + ++DI+E ++ +                +SDF+A VSHE+RTPLT+I
Sbjct: 201 VHQVTHKKLGFVVIINDITEVRKLE--------------KIRSDFVANVSHELRTPLTSI 246

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
            GF E ++      +      ++   I+     +  ++ND+L +S+IE+ K     E ++
Sbjct: 247 RGFIETLREGAIDNV--EERDKFLEIIEFEAERLTRLINDILTLSEIENLKEGFVKEDIA 304

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
           +D+ V+E   +++  AN+K I +      +   I      ++Q+ +N++ N I +TP GG
Sbjct: 305 IDDEVNEIFYIMEKTANDKSIKLIKDLNCSGVVIKTSKDRLRQMIINLVDNGIKYTPEGG 364

Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
            + ++T      +V++ V+D+G+G++   + +  + F ++   +  +  GTGLGL + K 
Sbjct: 365 YVKVTT-IDRKGDVVIEVKDSGIGISKENIPRLFERFYRVDKGRSRKLGGTGLGLAIVKH 423

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFP 809
           +V++  G   + S   KGT   I+ P
Sbjct: 424 IVESMKGSISVESEVGKGTKFTIVLP 449


>gi|330974060|gb|EGH74126.1| signal transduction histidine kinase with CheB and CheR activity
            [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 1377

 Score =  348 bits (892), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 107/584 (18%), Positives = 209/584 (35%), Gaps = 25/584 (4%)

Query: 238  NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297
              +S+L          L+        S E      E+   IN    +  +   T +   +
Sbjct: 669  QMLSNLDRELQRTKLQLQDVIEQAEVSSEELKASNEEMQAINEELRSASEELETSKEELQ 728

Query: 298  ESFEYLSHRNHPSLSA--YFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKY 354
               E L   NH         D+  +     +    I   FV     + +  P    +   
Sbjct: 729  SINEELLTVNHELKIKVEETDQVNDYLSNLISSTDIATIFVDRELRIKWFTPRATDIFNM 788

Query: 355  KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
            ++VD       ++  L   ++ D+       L   +R   +A            +     
Sbjct: 789  RAVDAGRPLMDITHRLKYDEMIDDAMSVFGSLKSIEREIASA------------SGGWYI 836

Query: 415  FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINREGI 473
                   +   +         +    R  ++++ +   ++  + E T D  I +++ +G+
Sbjct: 837  VRVLPFRSNVDQIGGIVLTFVDITSRREAEQELRLSEERMRLVTEGTHDYAIVVLDEKGL 896

Query: 474  ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
            I   N+     FGY  E+   + F               +  + S       +       
Sbjct: 897  ITDWNKGAWHTFGYSREEAEGRHFRFIFSAEDRRAGVPEME-LASARAHGRCDDERWHVR 955

Query: 534  KEEKLLSLR--IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
            K+         +          +     D++   + + +   +   +      K  F A 
Sbjct: 956  KDGSRFYCSGEVTALASKGFQGFVKIARDMTNHIKLQEEQQQSLAESLNSIQQKDQFFAV 1015

Query: 592  VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
            +SHE++ PL  I   ++V   +      +P   +    I  +      I++DL+D++++ 
Sbjct: 1016 MSHELKHPLNLIQLNAQV-ARRLPVAKKDPTLQKAIGTITDAVASQARIIDDLMDVARVR 1074

Query: 652  SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
            +GK+ L  + + +   V+E   +V  +  E    I          I AD   ++QI  N+
Sbjct: 1075 NGKLQLQCKTLDVVALVNEIQQVV--FKAEPGCKILFETPEQSLFIHADQTRIEQIIWNL 1132

Query: 712  LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ-IR 770
            LSNAI FTP  G + + TT      V + V DTG G+   +LE+  + FGQ  +     R
Sbjct: 1133 LSNAIKFTPVEGTVSVVTTQQEQ-WVRIEVIDTGPGIEKDQLERIFEMFGQADHQPSGKR 1191

Query: 771  GEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFPLYDT 813
              G G+GL L + +V+++ G+ + +S    KG+   +  PL D 
Sbjct: 1192 RGGLGIGLALVQQLVESHHGRIHAYSEGAGKGSRFTVELPLADV 1235



 Score = 38.5 bits (88), Expect = 5.2,   Method: Composition-based stats.
 Identities = 17/125 (13%), Positives = 37/125 (29%), Gaps = 11/125 (8%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            +D  G + + ++    T G    +  G     +             +L   +        
Sbjct: 891  LDEKGLITDWNKGAWHTFGYSREEAEGRHFRFIFSAEDRRAGVPEMELASARAHGRCDDE 950

Query: 149  LWPI--EGTNLYVPIDLAALPIYSRNREFSGFRGFG-IVHVNR-VDNDPRALGKRLDKKF 204
             W +  +G+  Y   ++ AL          GF+GF  I               + L +  
Sbjct: 951  RWHVRKDGSRFYCSGEVTALASK-------GFQGFVKIARDMTNHIKLQEEQQQSLAESL 1003

Query: 205  SHLHE 209
            + + +
Sbjct: 1004 NSIQQ 1008


>gi|330506779|ref|YP_004383207.1| two-component hybrid sensor and regulator [Methanosaeta concilii
           GP-6]
 gi|328927587|gb|AEB67389.1| two-component hybrid sensor and regulator [Methanosaeta concilii
           GP-6]
          Length = 1103

 Score =  348 bits (892), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 108/395 (27%), Positives = 182/395 (46%), Gaps = 27/395 (6%)

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR- 494
           E  +    +  M     ++  I+    D   +IN+EG++++ NRA+  +     EDIL  
Sbjct: 425 EVQERIQAEAAMRDSERRMADIINFLPDATFVINKEGVVIAWNRAIEMMTQVKAEDILGK 484

Query: 495 -------------KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
                        +P  + L  N    +     E+   +         + +    KL  L
Sbjct: 485 GEYEYSLPFYKKRRPILIDLVTNQDLDVKGCYEELKWHEDGSLAGVSFISNL-NGKLTYL 543

Query: 542 RIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
           +     L  S         ++ DI++ K  +  L ++K+ AE  +  KS+FLA +SHEIR
Sbjct: 544 QGSAAVLYDSEGNIYGAIESIRDITDQKMVEEDLKNSKERAELATRSKSNFLANMSHEIR 603

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TP+ A++G + ++      P       EY   I   GN +L I+N++LD SKIE  KM L
Sbjct: 604 TPMNAVVGMTGLLLETDLKP----EQREYLETIRTGGNTLLAIINNILDYSKIEGEKMEL 659

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAI 716
              P  L   + E++ +V   A EK + I     +++PR IL D   ++QI +N+L NA 
Sbjct: 660 EILPFDLLGCIEESMDMVAANAAEKGLEIAYFQDDDVPRFILGDQIRLRQILVNLLGNAT 719

Query: 717 HFTPSGGQI-IISTTHTSNEEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
            FT  G  +  +STT   +  +    RV DTG+G++   L +  + F Q+ +S      G
Sbjct: 720 KFTEKGEIVLSLSTTPLDDGRIELHFRVMDTGIGISQENLSRLFQFFTQVDSSTTRHYGG 779

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           TGLGL +++ +V+   G+ ++ S    G+      
Sbjct: 780 TGLGLAISRRLVEMMEGRIWVESEKGVGSTFHFTI 814



 Score = 41.6 bits (96), Expect = 0.59,   Method: Composition-based stats.
 Identities = 19/208 (9%), Positives = 48/208 (23%), Gaps = 27/208 (12%)

Query: 35  ETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGY 94
           + E + ++  C                    + ++      F            I+  G 
Sbjct: 414 QLEDTNRDLNCEVQERIQAEAAMRDSERRMADIINFLPDATFV-----------INKEGV 462

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG---KTTLWP 151
           +   +  +       A  ++G    + S   +      + DL+  Q+       +   W 
Sbjct: 463 VIAWNRAIEMMTQVKAEDILGKGEYEYSLPFYKKRRPILIDLVTNQDLDVKGCYEELKWH 522

Query: 152 IEGTNLYVP-----------IDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
            +G+   V            +  +A  +Y       G      +             K  
Sbjct: 523 EDGSLAGVSFISNLNGKLTYLQGSAAVLYDSEGNIYGA--IESIRDITDQKMVEEDLKNS 580

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228
            ++       K    +    +       
Sbjct: 581 KERAELATRSKSNFLANMSHEIRTPMNA 608


>gi|218778728|ref|YP_002430046.1| multi-sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218760112|gb|ACL02578.1| multi-sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 1022

 Score =  348 bits (892), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 86/370 (23%), Positives = 166/370 (44%), Gaps = 16/370 (4%)

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
           + +   +  +ILE+  +G   ++  G  L  N  + K+ GY   ++  K +   L + T 
Sbjct: 210 LRLSEEKHRTILESIEEGYYEVDLAGSFLFFNPGLCKILGYTKAELSGKNYREILTEKTA 269

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF----SSCYSLTMHDIS 562
            +     +++        +    +   K+    ++   I  +       + +     D++
Sbjct: 270 QIAYEKFSDVYRTGEPSKVADWIMIK-KDGSECAVEASISLIKDLNDKPAGFRGVARDVT 328

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E  +   +    +++AE  S  KSDFLAR+SHEIRTPL A++G +E+  N++     N  
Sbjct: 329 ENLRL-LEADQKRQLAEAASLAKSDFLARMSHEIRTPLNAVVGMAELASNEKM----NQN 383

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             +    I    N ++ +VN +LD SKIE+ KM L   P  L   + +    + L A +K
Sbjct: 384 LKKIIETITSESNALVALVNRILDFSKIEAQKMELEEFPFDLGYLLEDIADSMGLEAYKK 443

Query: 683 RILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----V 737
            +         IP ++  D   ++Q+  N++ NAI FT  G ++ +     +  +    +
Sbjct: 444 GLEFILHINPEIPVQVKGDPGRIRQVLTNLIGNAIKFTSEG-EVFVKAELETRTDEKAII 502

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
              ++DTG+G+   +     + F Q  +S   +  GTGLG  ++K +V+   G+  + S 
Sbjct: 503 KFHIQDTGIGIPEEKRGLIFEAFTQADDSTTRKYGGTGLGTTISKKIVELMGGEIGLESR 562

Query: 798 PAKGTLIEII 807
              G++    
Sbjct: 563 EGCGSIFWFT 572



 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/128 (14%), Positives = 40/128 (31%), Gaps = 7/128 (5%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID-PNNHIGDLLKRQNTWYG 145
           + +D  G     +  L K +G    ++ G    ++              D+ +       
Sbjct: 229 YEVDLAGSFLFFNPGLCKILGYTKAELSGKNYREILTEKTAQIAYEKFSDVYRTGEPSKV 288

Query: 146 KT-TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRV-DNDPRALGKRLDKK 203
               +   +G+     ++ +   I   N + +GFRG  +            A  KR   +
Sbjct: 289 ADWIMIKKDGS--ECAVEASISLIKDLNDKPAGFRG--VARDVTENLRLLEADQKRQLAE 344

Query: 204 FSHLHEIK 211
            + L +  
Sbjct: 345 AASLAKSD 352


>gi|124009854|ref|ZP_01694522.1| PAS [Microscilla marina ATCC 23134]
 gi|123984175|gb|EAY24536.1| PAS [Microscilla marina ATCC 23134]
          Length = 1808

 Score =  348 bits (892), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 107/678 (15%), Positives = 228/678 (33%), Gaps = 62/678 (9%)

Query: 183  IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP----PHLRMKN 238
            +V         +   ++ +++     +           +  +            + + + 
Sbjct: 862  LVTDVTSHKTAQRRLRQSEEQLQDFLDNASILIQSVDLEGTVHYVNKYWCKKLGYSKAEA 921

Query: 239  KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN--NS 296
              ++L +    ++          L +E  +        T +      +      ++    
Sbjct: 922  LRTNLIDLVVPEEQEDYRALLQHLKTEGGAQQISTRLITKDGKTLMLEGSINIRKDGKPL 981

Query: 297  KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYK 355
                                E   L    ++  PI   +Y   G     N +   +    
Sbjct: 982  LTRSFLQDVTERNQAERAILEQNRLFEAFLENSPIGIQIYDKQGFSLQMNDAQKRILGLD 1041

Query: 356  SVDDIEIAGGLSTLLDAPKLS----DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411
            S +  +             L          + + L R +   +        IQ      +
Sbjct: 1042 SQETPKFNILQDERSQEAGLDFFYKAAYGGESIFLPRLETELVIKEEEGKAIQKE----V 1097

Query: 412  AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-R 470
             +  I F   N + E         +  +    ++++      + SI +A  + + + +  
Sbjct: 1098 CLNLIIFPIKNDYNEVEGVVTFTQDVSEQFTIEQELNESRYFIKSIADAIPNDVYVYDLE 1157

Query: 471  EGIILSTNRAVSKLFGYPVEDILR---KPFTVFLEQNTPSVMNHYLTEILSLDL------ 521
            +   + TN    K  G+ ++++ R   +     +  N    +     E+           
Sbjct: 1158 QERYVYTNTQYFKHSGFTIKEVDRGGLERIWDMIHPNDLPEIKAIFEEVYKGGEDMYEMS 1217

Query: 522  --------------RQTLEKITLGSTKEEKLLSLRIIIKKL-----PFSSCYSLTMHDIS 562
                           Q+L+   L    + K + +   +           +     + +I+
Sbjct: 1218 YRLACNLNNKKGKTHQSLDPTQLHQEGQ-KYVWVYDRLVPFKINVEGRVTQILGVVQNIT 1276

Query: 563  EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
            + K  + +L  AK+ AEK    K  FL+ +SHEIRTP+ A+IG + ++  +   P     
Sbjct: 1277 DSKNFEEELIQAKQDAEKALQAKEQFLSTMSHEIRTPMNAVIGITHLLLEEDHKP----E 1332

Query: 623  YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             +E    +  S   +L ++ND+LD +KIE+GK++      +L E ++         A EK
Sbjct: 1333 QLENLKTLKFSAENLLALINDILDYNKIEAGKISFERVDFNLREFINNIKHAFNYQAAEK 1392

Query: 683  RILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS-------- 733
             I +      ++P +L  D   + QI  N+L NAI FT  G  +++              
Sbjct: 1393 GIELEFYVERDVPNLLIGDPVRLNQILTNLLGNAIKFTDKGF-VVVKVQLQETLPDKQNI 1451

Query: 734  ---NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
                  ++  V+D+G+G+   +     + F Q  +    R  GTGLGL + K +++   G
Sbjct: 1452 PHQEVSLLFSVKDSGIGIAPDKQSTIFERFTQADSDTTRRFGGTGLGLSITKYLIEHQGG 1511

Query: 791  KFYIFSTPAKGTLIEIIF 808
            +  + S   KG+      
Sbjct: 1512 EIGLHSELGKGSEFYFFL 1529



 Score =  134 bits (336), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 59/499 (11%), Positives = 135/499 (27%), Gaps = 24/499 (4%)

Query: 92   HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD-LLKRQNTWYGKTTLW 150
             G+   IS  +    G    +M+  ++ +            +   +LK +     +    
Sbjct: 525  EGFFSYISPSVEGLTGYKDGEMMHQKVIEWVYEEDQAYVISVWHKVLKSRALQILEYRFK 584

Query: 151  PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
               G    V ++    P+Y    +    +G                 K+       + + 
Sbjct: 585  HKNGEL--VWLETHLFPVYDDAGKLKHVQGN--TRNITERKQSEFTLKQTRDYLIEVLDH 640

Query: 211  KKGHSSVEKEKYDIFSQQSP--PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT--SEE 266
                  V+ E+Y+  S          + + +V   T+Y     +   T +       S  
Sbjct: 641  IPDPVFVKNERYEFISVNEAYCELVGKPREQVLLKTDYDIFASEDAHTLREKDSQVFSTG 700

Query: 267  SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE---SFEYLSHRNHPSLSAYFDEGENLTP 323
            ++   Q     +N  +          +++  +              +        E    
Sbjct: 701  NTAEYQRVITNLNGEKRHILVKIDIFRDDKNQKVLVGVIRDITQQKTAEERLANNERSLK 760

Query: 324  ETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
              +       F          N  F      K     +    L   +         +   
Sbjct: 761  AILTSFNDIVFE------INQNLIFTNFWGDKDKLFFDDQDFLGKKVTKVMDDPMRSYFA 814

Query: 384  VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
              L        +      ++Q   ++  + T     + ++       + +  +    +  
Sbjct: 815  SSLRHVLDNKTSKIIEYPSVQNGVKSWYSCTINYLPETSE--RQAGVSVLVTDVTSHKTA 872

Query: 444  KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            +R++     QL   L+  S  I  ++ EG +   N+   K  GY   + LR      +  
Sbjct: 873  QRRLRQSEEQLQDFLDNASILIQSVDLEGTVHYVNKYWCKKLGYSKAEALRTNLIDLVVP 932

Query: 504  NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL--TMHDI 561
                     L  + +    Q +    +  TK+ K L L   I              + D+
Sbjct: 933  EEQEDYRALLQHLKTEGGAQQISTRLI--TKDGKTLMLEGSINIRKDGKPLLTRSFLQDV 990

Query: 562  SEWKQEKNKLSHAKKIAEK 580
            +E  Q +  +    ++ E 
Sbjct: 991  TERNQAERAILEQNRLFEA 1009



 Score =  115 bits (287), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 52/481 (10%), Positives = 135/481 (28%), Gaps = 30/481 (6%)

Query: 117 RLCDVSDILHIDPNNHIGD---LLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNR 173
           +L  V     +            LK+    + +  +   EG+  ++   LA   ++++  
Sbjct: 169 QLKSVIHPDDLSQLIAYRQGLVSLKKGEIDFVEYRIKTKEGSYAWL---LAKDVVFTQEA 225

Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP-- 231
                +  G+        +      + +  +  +   ++           +         
Sbjct: 226 SGEVTQVLGLARDITEIKEANQKLLQSEALYRAVINTQQEILCRFLPDTTLTFVNEAYCQ 285

Query: 232 PHLRMKNKVSS---LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288
              +  + + +   L    A     +K     +   +     E +            +  
Sbjct: 286 FFNKTADDLINTPFLEMVPAENHASVKKRLKKIAQEKRPITQEYKVMVEDQTEDIWLRWT 345

Query: 289 FGTLQNNSKESFE----YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFY 343
              + +   +  E     L   +   +     E + +    ++  PI  F+      L +
Sbjct: 346 DYPIFDEKGQLVEFQSVGLEITDRKRVEIELQEQKQMLESILNTLPIHVFIKDENSRLLF 405

Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403
            N + L   + K    I         +   K++D       +L + D            I
Sbjct: 406 VNQTMLDFLRKKPEQLIGK---TDAEIFPSKVADKFFDDDELLKKGDLPDNWEE----EI 458

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
           + +                         G   E    +  + ++     +   I   T+D
Sbjct: 459 EVDNHR-HFFRTGKCLIPLPMQNTHYLLGYSFEITPLKETQLQLHESEAKYRLIANNTND 517

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
            I +   EG     + +V  L GY   +++ +    ++ +   + +     ++L     Q
Sbjct: 518 LICLHTYEGFFSYISPSVEGLTGYKDGEMMHQKVIEWVYEEDQAYVISVWHKVLKSRALQ 577

Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM----HDISEWKQEKNKLSHAKKIAE 579
            L        K  +L+ L   +  +   +     +     +I+E KQ +  L   +    
Sbjct: 578 IL--EYRFKHKNGELVWLETHLFPVYDDAGKLKHVQGNTRNITERKQSEFTLKQTRDYLI 635

Query: 580 K 580
           +
Sbjct: 636 E 636



 Score =  101 bits (252), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 55/522 (10%), Positives = 148/522 (28%), Gaps = 46/522 (8%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D +  L  +++ +   +     ++IG    ++      D      +LLK+ +        
Sbjct: 398 DENSRLLFVNQTMLDFLRKKPEQLIGKTDAEIFPSKVADKFFDDDELLKKGDLPDNWEEE 457

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
             ++    +       +P+     + + +   G         + +      + K+  +  
Sbjct: 458 IEVDNHRHFFRTGKCLIPL---PMQNTHYL-LGYSFEITPLKETQLQLHESEAKYRLIAN 513

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK----DDVLKTEKYPLLTSE 265
                  +   +            L        + +         D       +  +   
Sbjct: 514 NTNDLICLHTYEGFFSYISPSVEGLTGYKDGEMMHQKVIEWVYEEDQAYVISVWHKVLKS 573

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD----EGENL 321
            +    +  F   N      + +   + +++ +      +  + +     +    +  + 
Sbjct: 574 RALQILEYRFKHKNGELVWLETHLFPVYDDAGKLKHVQGNTRNITERKQSEFTLKQTRDY 633

Query: 322 TPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
             E +D  P P FV +        N ++  L        +        +  +        
Sbjct: 634 LIEVLDHIPDPVFVKNERYEFISVNEAYCELVGKPREQVLLKTDY--DIFASEDAH---- 687

Query: 381 IKPVMLYRSDRTCIAASARLHTIQ----WNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
                L   D    +        +     N E    +  I   + ++  + +   G+  +
Sbjct: 688 ----TLREKDSQVFSTGNTAEYQRVITNLNGEKRHILVKIDIFRDDKNQKVL--VGVIRD 741

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV-SKLFGYPVEDILRK 495
               +  + ++      L +IL + +D +  IN+   ++ TN         +  +D L K
Sbjct: 742 ITQQKTAEERLANNERSLKAILTSFNDIVFEINQN--LIFTNFWGDKDKLFFDDQDFLGK 799

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF----S 551
             T  ++    S     L  +L     + +E  ++   +          I  LP      
Sbjct: 800 KVTKVMDDPMRSYFASSLRHVLDNKTSKIIEYPSV---QNGVKSWYSCTINYLPETSERQ 856

Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
           +  S+ + D++  K         ++   +      DFL   S
Sbjct: 857 AGVSVLVTDVTSHKTA-------QRRLRQSEEQLQDFLDNAS 891



 Score = 98.9 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 35/311 (11%), Positives = 95/311 (30%), Gaps = 20/311 (6%)

Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDE----GENLTPETVDKCPIPFFVYSHGN-LFYANP 346
            Q  S E  + L      +     ++     E L    ++        +     L + N 
Sbjct: 222 TQEASGEVTQVLGLARDITEIKEANQKLLQSEALYRAVINTQQEILCRFLPDTTLTFVNE 281

Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
           ++       + D I      +T       ++N+A     L +  +     +     +  +
Sbjct: 282 AYCQFFNKTADDLI------NTPFLEMVPAENHASVKKRLKKIAQEKRPITQEYKVMVED 335

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
           +   + + +  +   ++  + +    +  E  D +  + +++ +   L SIL      + 
Sbjct: 336 QTEDIWLRWTDYPIFDEKGQLVEFQSVGLEITDRKRVEIELQEQKQMLESILNTLPIHVF 395

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
           I +    +L  N+ +        E ++ K                    +   DL    E
Sbjct: 396 IKDENSRLLFVNQTMLDFLRKKPEQLIGKTDAEIFPSKVADKFFDDDELLKKGDLPDNWE 455

Query: 527 KITLGSTKEEKLLSLR-IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
           +            + + +I   +  +        +I+  K+ + +L          S  K
Sbjct: 456 EEIEVDNHRHFFRTGKCLIPLPMQNTHYLLGYSFEITPLKETQLQLHE--------SEAK 507

Query: 586 SDFLARVSHEI 596
              +A  ++++
Sbjct: 508 YRLIANNTNDL 518



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/264 (12%), Positives = 82/264 (31%), Gaps = 10/264 (3%)

Query: 322 TPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
               +   P   +VY     +L Y+N  +           +     L +++    LS   
Sbjct: 125 LKGVLQTTPDLIYVYDLREESLVYSNRIYDNKFALDQAPFLP-LDQLKSVIHPDDLSQLI 183

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
           A +  ++            R+ T       +  +            E     G+  +  +
Sbjct: 184 AYRQGLVSLKKGEIDFVEYRIKT--KEGSYAWLLAKDVVFTQEASGEVTQVLGLARDITE 241

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
            +   +K+        +++    + +     +  +   N A  + F    +D++  PF  
Sbjct: 242 IKEANQKLLQSEALYRAVINTQQEILCRFLPDTTLTFVNEAYCQFFNKTADDLINTPFLE 301

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH 559
            +     + +   L +I       T E   +    + + + LR     +       +   
Sbjct: 302 MVPAENHASVKKRLKKIAQEKRPITQEYKVMVED-QTEDIWLRWTDYPIFDEKGQLVEFQ 360

Query: 560 ----DISEWKQEKNKLSHAKKIAE 579
               +I++ K+ + +L   K++ E
Sbjct: 361 SVGLEITDRKRVEIELQEQKQMLE 384



 Score = 68.5 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 45/412 (10%), Positives = 98/412 (23%), Gaps = 50/412 (12%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR-QNTWYGKT 147
            +D  G +  +++   K +G    + +   L D+      +    +   LK         T
Sbjct: 897  VDLEGTVHYVNKYWCKKLGYSKAEALRTNLIDLVVPEEQEDYRALLQHLKTEGGAQQIST 956

Query: 148  TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
             L   +G  L +   +       ++ +    R F  +      N         ++ F   
Sbjct: 957  RLITKDGKTLMLEGSINIR----KDGKPLLTRSF--LQDVTERNQAERAILEQNRLFEAF 1010

Query: 208  HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
             E       +  ++             R+    S  T  +    D    E       + +
Sbjct: 1011 LENSPIGIQIYDKQGFSLQMNDA--QKRILGLDSQETPKFNILQDERSQEAGLDFFYKAA 1068

Query: 268  SLPEQEDFHTINLNQYTKKQYFGTLQNNS-----------------KESFEYLSHRNHPS 310
               E      +      K++    +Q                                 +
Sbjct: 1069 YGGESIFLPRLETELVIKEEEGKAIQKEVCLNLIIFPIKNDYNEVEGVVTFTQDVSEQFT 1128

Query: 311  LSAYFDEGENLTPETVDKCPIPFFVYSH--GNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
            +    +E         D  P   +VY        Y N  +   + +   +     GGL  
Sbjct: 1129 IEQELNESRYFIKSIADAIPNDVYVYDLEQERYVYTNTQYFKHSGFTIKEV--DRGGLER 1186

Query: 369  LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH-------------------TIQWNREN 409
            + D    +D   IK +                                     +    + 
Sbjct: 1187 IWDMIHPNDLPEIKAIFEEVYKGGEDMYEMSYRLACNLNNKKGKTHQSLDPTQLHQEGQK 1246

Query: 410  SLAMTFIPFE-KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
             + +       K N         G+     D++  + ++          L+A
Sbjct: 1247 YVWVYDRLVPFKINVEGRVTQILGVVQNITDSKNFEEELIQAKQDAEKALQA 1298



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 36/272 (13%), Positives = 77/272 (28%), Gaps = 21/272 (7%)

Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
               + G + + N        Y   + +      + L     L D   +       +  +
Sbjct: 2   IVTDAQGTILFFNKGAENKLGYTCSEVV------NKLNLTHFLLDFELLDLAENNLTQPS 55

Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM--------PQNGIEPEDVDTRINK 444
                A L          +    +  +    +   +            +  +    +  K
Sbjct: 56  PTTLFAILENKVVQASPCIEQLTVSTKDEKLWKCQLILNKEAHGNYVVMLHDMTQIKARK 115

Query: 445 RKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKP-FTVFLE 502
             + I    L  +L+ T D I + + RE  ++ +NR     F       L        + 
Sbjct: 116 DDLIIHHNFLKGVLQTTPDLIYVYDLREESLVYSNRIYDNKFALDQAPFLPLDQLKSVIH 175

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI-----IIKKLPFSSCYSLT 557
            +  S +  Y   ++SL   +         TKE     L         +     +     
Sbjct: 176 PDDLSQLIAYRQGLVSLKKGEIDFVEYRIKTKEGSYAWLLAKDVVFTQEASGEVTQVLGL 235

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
             DI+E K+   KL  ++ +     + + + L
Sbjct: 236 ARDITEIKEANQKLLQSEALYRAVINTQQEIL 267



 Score = 41.2 bits (95), Expect = 0.74,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 49/125 (39%), Gaps = 17/125 (13%)

Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRK--------------PFTVFLEQNTPSVMN 510
           + + + +G IL  N+      GY   +++ K                   L Q +P+ + 
Sbjct: 1   MIVTDAQGTILFFNKGAENKLGYTCSEVVNKLNLTHFLLDFELLDLAENNLTQPSPTTLF 60

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570
             L   +        +     STK+EKL   ++I+ K    + Y + +HD+++ K  K+ 
Sbjct: 61  AILENKVVQASPCIEQ--LTVSTKDEKLWKCQLILNKEAHGN-YVVMLHDMTQIKARKDD 117

Query: 571 LSHAK 575
           L    
Sbjct: 118 LIIHH 122


>gi|163749758|ref|ZP_02157004.1| two-component hybrid sensor and regulator [Shewanella benthica
           KT99]
 gi|161330571|gb|EDQ01529.1| two-component hybrid sensor and regulator [Shewanella benthica
           KT99]
          Length = 1176

 Score =  348 bits (892), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 119/551 (21%), Positives = 211/551 (38%), Gaps = 23/551 (4%)

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN--LTPETV 326
           L E +      L   T  Q      +   ++ +  +           D           +
Sbjct: 189 LSELKRASKRILQGETGVQIPVNSHDEIGQTTQAFNRMIEKIEKNAQDLESANIRLSTIL 248

Query: 327 DKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
           +     F +    G +   NP+   L  Y + D I     +                 + 
Sbjct: 249 EAAVDGFIIIDTQGIIVQVNPAVGHLFGYDNNDLIGHNVSI---FMPSHERHMQNDFLMR 305

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
              S R  +    R    Q        +             ++   G+  +  D +  + 
Sbjct: 306 FINSKRGGLQGKGRELVAQHKSGKLFPIDLS--VSKMLIDGDVMLLGLVKDLSDIKRKEA 363

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF-LEQN 504
           + +     L + LEA+ D +  I+  G I   N A S+LFG+  E  L + F        
Sbjct: 364 EAKRTESILLATLEASQDALITIDITGRIQEFNEAASQLFGHSREQALGEIFEELIFVDI 423

Query: 505 TPSVMNHYLTEILSLDLRQTLEK--ITLGSTKEEKLLSLRI--IIKKLPFSSCYSLTMHD 560
                   L           ++K    +    +     + +  I  +L      +  +HD
Sbjct: 424 ERKAFKEELEVFRKTGCGPAIKKSVELMSIRADGTHFPVEMKMIPVQLGDEILLTAFLHD 483

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           +SE  Q + +L  AK+ AE  S  KS FLA +SHEIR+PL A++G  E++ + +     N
Sbjct: 484 VSERMQYETELKQAKEQAELGSKAKSRFLATMSHEIRSPLNAVLGGVELMLDSKL----N 539

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
                YA+    +G  +L  +ND+LD SKIE+G+M L     S  + V++ + ++   AN
Sbjct: 540 KDQRIYAHTAKEAGTALLSTINDILDFSKIEAGQMVLKNMSFSPAKMVAQVMQILAPKAN 599

Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
           EK + + T    N+P  +  D + ++Q+  N++ NAI F+ SGG I +           +
Sbjct: 600 EKGVNLATFINRNVPALVKGDAQRLRQVLHNLVDNAIKFS-SGGCISVEMWIPDGHHQEV 658

Query: 740 R----VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
           +    V D G+G++    +K  + F Q+ +       GTGLGL +   ++    G+  + 
Sbjct: 659 QLHCAVTDEGIGISLSAQKKLFQEFSQVHDQHNTNYTGTGLGLAICSELITMMGGEIELS 718

Query: 796 STPAKGTLIEI 806
           S    G+    
Sbjct: 719 SRLGHGSCFRF 729


>gi|87310159|ref|ZP_01092291.1| sensory box sensor histidine kinase/response regulator
           [Blastopirellula marina DSM 3645]
 gi|87287149|gb|EAQ79051.1| sensory box sensor histidine kinase/response regulator
           [Blastopirellula marina DSM 3645]
          Length = 845

 Score =  347 bits (891), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 113/503 (22%), Positives = 214/503 (42%), Gaps = 24/503 (4%)

Query: 315 FDEGENLTPETVDKCPIPFFVYSHGNLFY-ANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
                      ++   I  + +   N  + A+   L +   ++ D++        LL   
Sbjct: 190 LQTANERLDCALEAGGIGVWQWRDENDQFEADGRALQMHGIQATDNVSTLAEFLDLLHED 249

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
              +        +     T  + + R   I         +       ++   +     G+
Sbjct: 250 DREELRTATARCVSH--GTNYSVNYR---IPRANGTVRYIQSHGKVLSSDDGKTRKLVGV 304

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
             +  +       ++    +L  +  +T   + I N+ G     N A ++L GY  E+ +
Sbjct: 305 CIDQTELTEYHAAVK----KLSLVASSTRHSVVITNQAGETEWVNNAFTQLTGYSAEEAI 360

Query: 494 RKPFTVFLE-QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
            +     L+   T       +   L    ++ +    L   K+     + + I+ +    
Sbjct: 361 GRKPGSLLQGPETNQETIEIVRRALQ--KQEQVSAELLNYAKDGHSYWIALEIEPVFDQE 418

Query: 553 C----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                +  T  DI++  +   +L  A + AE  +  KS FLA +SHEIRTPL  I+GF++
Sbjct: 419 GRLSNFIATQIDITDQVRRTEELIEAMETAESANHAKSQFLANMSHEIRTPLNGIMGFTD 478

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
           ++         +    EY   +  SG  +L ++N++LD+SKIESG++ +   P S  + +
Sbjct: 479 LLLYDIESTEAD--RREYLETVRSSGEHLLALINEILDLSKIESGQLLIEKFPCSPQQIL 536

Query: 669 SEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIII 727
           ++ IS+++    EK+I IR  + ++IP ++L D   +KQ+ LNI+ NAI FT +G ++ I
Sbjct: 537 TDVISVLRPKFEEKKIQIRRHWDSDIPTQVLTDAPRLKQLLLNIVGNAIKFTQTG-EVRI 595

Query: 728 STTHTSNE---EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
                +      +I  V DTG+G+   +LE   +PF Q  +S   R  GTGLGL +++ +
Sbjct: 596 VARLEAEATRSRLIFDVIDTGIGIPQGKLEMIFQPFSQADSSVTRRFGGTGLGLTISRNL 655

Query: 785 VDANMGKFYIFSTPAKGTLIEII 807
            +   G  +  S    G+   I 
Sbjct: 656 AELLGGSLHAESVEGLGSKFTIT 678



 Score = 58.1 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 15/168 (8%), Positives = 47/168 (27%), Gaps = 6/168 (3%)

Query: 98  ISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTWYGKTTLWPIEGT 155
           ++    +  G  A + IG +   +      +      +   L++Q     +   +  +G 
Sbjct: 344 VNNAFTQLTGYSAEEAIGRKPGSLLQGPETNQETIEIVRRALQKQEQVSAELLNYAKDGH 403

Query: 156 NLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHS 215
           + ++ +++   P++ +    S F    I                  +     +  K    
Sbjct: 404 SYWIALEI--EPVFDQEGRLSNFIATQI--DITDQVRRTEELIEAMETAESANHAKSQFL 459

Query: 216 SVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
           +    +              +   + S         + +++    LL 
Sbjct: 460 ANMSHEIRTPLNGIMGFTDLLLYDIESTEADRREYLETVRSSGEHLLA 507


>gi|119483262|ref|ZP_01618676.1| sensory transduction histidine kinase [Lyngbya sp. PCC 8106]
 gi|119458029|gb|EAW39151.1| sensory transduction histidine kinase [Lyngbya sp. PCC 8106]
          Length = 1710

 Score =  347 bits (891), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 116/594 (19%), Positives = 224/594 (37%), Gaps = 39/594 (6%)

Query: 245  EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY-----FGTLQNNSKES 299
            E      ++++     + T+ E  L  +    T       +             +     
Sbjct: 899  EVIPELLEIVEPIYRQVQTTGEPVLNIEIQGTTAAQPDIKRDWITSYYPVELSSDKIGFG 958

Query: 300  FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG---NLFYANPSFLLLTKYKS 356
                       +     + E      ++  P   F           Y +P+   L  Y+ 
Sbjct: 959  VVVTEVTQLKQVQEALRQSEARLQYLLNNTPAVIFSCKPQGDYAATYISPNIRNLLGYEP 1018

Query: 357  VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
             + +  +           L  ++  + +                + ++        ++  
Sbjct: 1019 EEFLNNSD-----FWVTHLHPDDRARILTGLPKGLNEDGFYTHEYRLRTTENTYRWVSAT 1073

Query: 417  PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476
                 +Q    +   G   +  +  + +        +    L  +       + E     
Sbjct: 1074 LQMIKDQQNTPLECVGCLMDITERVVAEEAWRWSEERFNLALSNSPITFTTQDCELRYTW 1133

Query: 477  T-NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
              N A     G+  E+I+    T  L  +    +      ++   +R   E   +    +
Sbjct: 1134 VYNPA----PGFTFEEIVGNLETELLSADEAERILAIKQPVIETGIRNCQEY-FIARDGQ 1188

Query: 536  EKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEK------NKLSHAKKIAEKESSHKSD 587
             +   L +   +   ++    +  + DI+E KQ +       +L   K+ AE  +  KS 
Sbjct: 1189 MRYYELSVEPLRDSDNNIIGIATVVIDITERKQAELERQRARELQREKEAAESANLAKSR 1248

Query: 588  FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
            FLA +SHE+RTPL AI+GF++++  Q   P  +    EY N I RSG  +L ++ND+L +
Sbjct: 1249 FLANMSHELRTPLNAILGFTQLLLRQ---PQFSGEPSEYLNIIHRSGKHLLGLINDILTL 1305

Query: 648  SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQ 706
            SK+E+G++ L  +P  L   +    ++  L A  KR+ +      N+PR ++ D   + Q
Sbjct: 1306 SKVEAGRIYLKTKPFDLSLLLKTLENMFSLKAANKRLQLEIKADANVPRGLIGDEDKLHQ 1365

Query: 707  IALNILSNAIHFTPSGGQ-IIISTTHTSNE------EVILRVRDTGVGMTNYELEKAMKP 759
            + +N+LSNAI FT  G   + + +     E       +   VRDTG G+   ELEK  +P
Sbjct: 1366 VLINLLSNAIKFTSFGEVCLTVRSQPVPAEMSSNSCYLQFEVRDTGAGINFDELEKIFEP 1425

Query: 760  FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
            F Q    ++++ + TGLGL +++  V+   GK  + S    G++ +   PL   
Sbjct: 1426 FIQTEAGEKVK-QSTGLGLAISREFVELMGGKITVESQLKHGSVFQFTIPLERV 1478



 Score = 68.5 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 35/394 (8%), Positives = 89/394 (22%), Gaps = 56/394 (14%)

Query: 90   DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
            D +     +++ L    G    + IG +  +V   L          +             
Sbjct: 869  DENWRYLRMNKILADINGKSVEEHIGKQPQEVIPELLEIVEPIYRQVQTTGEPVLNIEIQ 928

Query: 150  --------WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFG-IVHVNRVDNDPRALGKRL 200
                       +    Y P++L+           S   GFG +V         +   ++ 
Sbjct: 929  GTTAAQPDIKRDWITSYYPVELS-----------SDKIGFGVVVTEVTQLKQVQEALRQS 977

Query: 201  DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM----KNKVSSLTE----YYAHKDD 252
            + +  +L           K + D  +    P    +      +  + ++    +    D 
Sbjct: 978  EARLQYLLNNTPAVIFSCKPQGDYAATYISPNIRNLLGYEPEEFLNNSDFWVTHLHPDDR 1037

Query: 253  VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
                   P   +E+     +    T              +++      E +      +  
Sbjct: 1038 ARILTGLPKGLNEDGFYTHEYRLRTTENTYRWVSATLQMIKDQQNTPLECVGCLMDITER 1097

Query: 313  AYFDEGENLTPE----TVDKCPIPFFVYSHG-NLFYA-NPS----FLLLTKYKSVDDIEI 362
               +E    + E     +   PI F          +  NP+    F  +      + +  
Sbjct: 1098 VVAEEAWRWSEERFNLALSNSPITFTTQDCELRYTWVYNPAPGFTFEEIVGNLETELLSA 1157

Query: 363  AGGLSTL-LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                  L +  P +              D                               
Sbjct: 1158 DEAERILAIKQPVIETGIRNCQEYFIARDGQMRYYE-----------------LSVEPLR 1200

Query: 422  NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
            +     +    +  +  + +  + + +       
Sbjct: 1201 DSDNNIIGIATVVIDITERKQAELERQRARELQR 1234



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/343 (9%), Positives = 98/343 (28%), Gaps = 27/343 (7%)

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
           E+     +E+    N    T  +    +      S E L   N    +   +    +   
Sbjct: 666 EDELQQARENLQATNEELETTNEEQQAINEELIASNEELQSTNQELYTINSEYQNQIQKL 725

Query: 325 TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIE---IAGGLSTLLDAPKLSDNNAI 381
                 +   + S           L + K+     +        +   L     + +   
Sbjct: 726 IELSNDVNNLLQSTDIGVIFLDKSLKIRKFTPAVVVAINLNEVDIDRPLQHISYNFDCPH 785

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
              +L +           +  +         +         +               +T+
Sbjct: 786 FYSLLQQVLTHEQPIEQEVKILTTGD----TLLMRIHPYRQENQSCEGLVLSFVNISETK 841

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
             + ++E + ++L +I      G+ + +     L  N+ ++ + G  VE+ + K     +
Sbjct: 842 EFQNEIERQNIELENIYANIPVGLCLQDENWRYLRMNKILADINGKSVEEHIGKQPQEVI 901

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK-----EEKLLSLRIIIKKLPFSSCYSL 556
                 ++     ++ +      L     G+T      +   ++    ++       + +
Sbjct: 902 -PELLEIVEPIYRQVQTTGEP-VLNIEIQGTTAAQPDIKRDWITSYYPVELSSDKIGFGV 959

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
            + ++++ KQ +  L        ++S  +  +L        TP
Sbjct: 960 VVTEVTQLKQVQEAL--------RQSEARLQYLLN-----NTP 989



 Score = 45.8 bits (107), Expect = 0.029,   Method: Composition-based stats.
 Identities = 17/179 (9%), Positives = 45/179 (25%), Gaps = 10/179 (5%)

Query: 70   SENTFVFDPIPRTVRFTWNIDAHGYLKEI-SEELPKTIGNYAFKMIGMRLCDVSDILHID 128
            SE  F        + FT   D       + +       G    +++G    ++      +
Sbjct: 1107 SEERFNLALSNSPITFTTQ-DCELRYTWVYNPA----PGFTFEEIVGNLETELLSADEAE 1161

Query: 129  PNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNR 188
                I   +        +      +G       +L+  P+   +    G     I     
Sbjct: 1162 RILAIKQPVIETGIRNCQEYFIARDG--QMRYYELSVEPLRDSDNNIIGIATVVI--DIT 1217

Query: 189  VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247
                     +R  +        +  + +  +   ++  +   P +  +      L +  
Sbjct: 1218 ERKQAELERQRARELQREKEAAESANLAKSRFLANMSHELRTPLNAILGFTQLLLRQPQ 1276


>gi|294140286|ref|YP_003556264.1| sensory box histidine kinase/response regulator [Shewanella
           violacea DSS12]
 gi|293326755|dbj|BAJ01486.1| sensory box histidine kinase/response regulator [Shewanella
           violacea DSS12]
          Length = 1214

 Score =  347 bits (891), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 113/504 (22%), Positives = 200/504 (39%), Gaps = 21/504 (4%)

Query: 314 YFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
             +         ++     F +    G +   NP+   L  Y + D I     +      
Sbjct: 258 ELESANIRLSTILEAAVDGFIIIDTQGLIVQVNPAVGQLFGYDNNDLIGHNVSI---FMP 314

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
                      +    S R  +    R    Q        +             ++   G
Sbjct: 315 SHERHMQHDFLMRFINSKRGVLQGRGRELVAQHKNGKLFPIDLS--VSKMLIDGDIMLLG 372

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
           +  +  D +  + + +     L + LEA+ D +  I+  G I   N A S LFG+  E  
Sbjct: 373 LVKDLSDIKRKEAEAKRTESILLATLEASQDALITIDITGRIQEFNEAASHLFGHSREQA 432

Query: 493 LRKPFTVF-LEQNTPSVMNHYLTEILSLDLRQTLEK--ITLGSTKEEKLLSLRI--IIKK 547
           L +                  L           ++K    +    +     + +  I  +
Sbjct: 433 LGEILEDLIFVDIEKKAFKEGLETFRKTGCGPAIKKSVELMSIRADGTNFPVEMKMIPVQ 492

Query: 548 LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
           L      +  +HD+SE  Q + +L  AKK AE  S  KS FLA +SHEIR+PL A++G  
Sbjct: 493 LGDEILLTAFLHDVSERMQYETELKQAKKQAELGSKAKSRFLATMSHEIRSPLNAVLGGV 552

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
           E++ + +     N     YA+    +G  +L  +ND+LD SKIE+G+M L     S  + 
Sbjct: 553 ELMLDSKL----NKDQRIYAHTAKEAGTALLSTINDILDFSKIEAGQMVLENMSFSPAKM 608

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII 726
           V++ + ++   ANEK + + T    N+P  +  D + ++Q+  N++ NAI F+ SGG + 
Sbjct: 609 VAQVMQILAPKANEKGVNLATFINRNVPELVKGDAQRLRQVLHNLVDNAIKFS-SGGCVS 667

Query: 727 ISTTHTSNEEVILR----VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
           +      +    ++    V D G+G++    +K  K F Q+ +      +GTGLGL +  
Sbjct: 668 VEMWIPDSHHQEVQLHCAVTDEGIGISLPAQKKLFKEFSQVHDQHNTNYKGTGLGLAICS 727

Query: 783 AMVDANMGKFYIFSTPAKGTLIEI 806
            ++    G+  + S    G+    
Sbjct: 728 ELIIMMGGEIELSSRLGHGSCFRF 751



 Score = 46.9 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 24/187 (12%), Positives = 54/187 (28%), Gaps = 18/187 (9%)

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEI 362
              +     A     E++   T++        +   G +   N +   L  +     +  
Sbjct: 376 DLSDIKRKEAEAKRTESILLATLEASQDALITIDITGRIQEFNEAASHLFGHSREQALGE 435

Query: 363 ---------------AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
                            GL T               +M  R+D T      ++  +Q   
Sbjct: 436 ILEDLIFVDIEKKAFKEGLETFRKTGCGPAIKKSVELMSIRADGTNFPVEMKMIPVQLGD 495

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI-A 466
           E  L        +  Q+   + Q   + E + ++   R +     ++ S L A   G+  
Sbjct: 496 EILLTAFLHDVSERMQYETELKQAKKQAE-LGSKAKSRFLATMSHEIRSPLNAVLGGVEL 554

Query: 467 IINREGI 473
           +++ +  
Sbjct: 555 MLDSKLN 561



 Score = 41.6 bits (96), Expect = 0.52,   Method: Composition-based stats.
 Identities = 19/154 (12%), Positives = 42/154 (27%), Gaps = 17/154 (11%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS--------DILHIDPNNHIGDLLKRQ 140
           ID  G + +++  + +  G     +IG  +                +   N    +L+ +
Sbjct: 280 IDTQGLIVQVNPAVGQLFGYDNNDLIGHNVSIFMPSHERHMQHDFLMRFINSKRGVLQGR 339

Query: 141 NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
                +       G    + + ++ + I   + +       G+V          A  KR 
Sbjct: 340 G---RELVAQHKNGKLFPIDLSVSKMLI---DGDIM---LLGLVKDLSDIKRKEAEAKRT 390

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL 234
           +       E  +           I        HL
Sbjct: 391 ESILLATLEASQDALITIDITGRIQEFNEAASHL 424


>gi|205374548|ref|ZP_03227344.1| sensory box histidine kinase PhoR [Bacillus coahuilensis m4-4]
          Length = 527

 Score =  347 bits (891), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 84/387 (21%), Positives = 173/387 (44%), Gaps = 26/387 (6%)

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
           ++         I   ++   ++ ++++    +L +++E    G+ +I+  G ++  N+  
Sbjct: 152 DETSMLSTSINILARNLQEMVSAQELQQ--DRLLTLIENMGSGLLLIDPRGFVVLMNKTF 209

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
            +LF     + L+K +   ++      +   +         +  +++ L    E K   +
Sbjct: 210 KELFEVDPSNYLKKRYHEAIQHEDIIKVVEEVFMTEE----KVRKQLLLPLHLERKHFEV 265

Query: 542 RIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                           L  HDI+E K+ +                + DF+A VSHE++TP
Sbjct: 266 YGAPIIGISDEWKGILLVFHDITELKKLE--------------QMRKDFVANVSHELKTP 311

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           +T+I GFSE + +          Y  + N +    + +  ++ DLLD+SK+E     L  
Sbjct: 312 ITSIKGFSETLLDGALEDRDTLEY--FLNIMLTESDRLQSLIQDLLDLSKLEQHGFKLDV 369

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719
               L   + E + +++  A EK I ++      +  +  D+   KQ+ +N+++NAI +T
Sbjct: 370 STFDLSRLLEEVVLMLKGKAEEKEIQLQFEPIPEL-TLEGDMNRFKQVFINLINNAISYT 428

Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
             GG + +       +E+ ++V+D GVG+   EL +  + F +I  ++     GTGLGL 
Sbjct: 429 GPGGHVKVFVK-EERDEITIKVQDNGVGIAASELPRIFERFYRIDKARSRNSGGTGLGLA 487

Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEI 806
           + K +V+A+ G+  + S+   GT   +
Sbjct: 488 IVKHIVEAHHGEIDVESSEGVGTTFIV 514


>gi|328545814|ref|YP_004305923.1| Alkaline phosphatase synthesis sensor protein phor [polymorphum
           gilvum SL003B-26A1]
 gi|326415554|gb|ADZ72617.1| Alkaline phosphatase synthesis sensor protein phor [Polymorphum
           gilvum SL003B-26A1]
          Length = 807

 Score =  347 bits (891), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 117/685 (17%), Positives = 237/685 (34%), Gaps = 40/685 (5%)

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS--- 205
                G    V +              +G      +     +   +A     + + S   
Sbjct: 137 RLRSAGDAFAVTLTTRKRTYVEAVGRTAGGVAVLRLRDLTGERQAQAELAARNARLSGEL 196

Query: 206 ----HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
                L E     +     +  +    S           ++         D    E    
Sbjct: 197 HMLHALLEAMPAPAWQRDAEGRVTWANSAYACAVDVADAATAVRDNVDFLDAAGREAMSR 256

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
              ++     +         +         +  N   +   +       L       E  
Sbjct: 257 DRDDDGCFRARMPIVAAGERRV---FEVTDVSANVGGAALAIDISELDRLKKELRRTEEF 313

Query: 322 TPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKS--VDDIEIAGGLSTLLDAPKLSDN 378
              T+D+      +Y     L + N +F  L    +  +D     G +   L A +    
Sbjct: 314 HGSTLDQLATAVAIYGGDRKLQFYNSAFRALWNLDTAFLDGRPEDGAVLDALRAARKLPE 373

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
            A   V   +   +  +  AR          +L +   P              G      
Sbjct: 374 QADYRVWRTKMLESYQSLEARESWWHLPDGRTLRVIANPHP-----------QGGVTYIY 422

Query: 439 DTRINKRKMEIEVMQLCSI----LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
           +    +  +E     L  +    L+  S+ +A+   +G +   N A   ++  P + +  
Sbjct: 423 ENVTERLDLESRYNALIRVQGETLDNLSEAVAVFGSDGRLRLWNPAFGSIWDLPEDQLAN 482

Query: 495 KP-----FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
            P           +         L   ++  +            ++  +L    +     
Sbjct: 483 MPHINDVVEWCAARPDEVQAWSQLAGSVTGLVDSRTHLAGRMERRDGTVLDYATVPLP-- 540

Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                 +T  ++++    +  L    +  E+    K+ F+  VS+E+R+PLT IIGF+++
Sbjct: 541 -DGGTLVTFVNVTDSVNVERALVEKNEALEQADQLKNAFIQHVSYELRSPLTNIIGFAQL 599

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           + + +FG L   +  EYA+YI  S + +L I+ND+LD++ I++G M L    V + + V+
Sbjct: 600 LSDPKFGELSR-KQGEYADYILSSSSALLAIINDILDLATIDAGIMELDLGEVDVADTVA 658

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
            A+  ++    + +I++RT    +I  + AD R ++Q+  N+++NA+ ++  GG I ++ 
Sbjct: 659 AAVEGLKDRLADAKIVLRTHVPGDIGTLYADERRLRQVLFNLIANAVRYSDEGGVIDVTC 718

Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
                  V+  V+D G G+    +++    F       + R  G GLGL + K+ V+ + 
Sbjct: 719 GRKD-GAVVFTVKDHGCGIPQEMIDQVFSRFVGHDAGTKRR--GAGLGLSIVKSFVELHG 775

Query: 790 GKFYIFSTPAKGTLIEIIFPLYDTS 814
           G+  I S    GT +   FP    S
Sbjct: 776 GQVEIQSREGVGTTVTCTFPAVPES 800



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/386 (8%), Positives = 87/386 (22%), Gaps = 23/386 (5%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR-QNTWYG 145
           W  DA G +   +      +                ++  +D      + + R ++    
Sbjct: 211 WQRDAEGRVTWANSAYACAVDVADAATAVRD-----NVDFLDAAGR--EAMSRDRDDDGC 263

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
                PI         ++        +    G      +             +       
Sbjct: 264 FRARMPIVAAGERRVFEVT-----DVSANVGGAALAIDISELDRLKKELRRTEEFHGSTL 318

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
                       +++     S      +L          +           +        
Sbjct: 319 DQLATAVAIYGGDRKLQFYNSAFRALWNLDTAFLDGRPEDGAVLDALRAARKLPEQADYR 378

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNN-------SKESFEYLSHRNHPSLSAYFDEG 318
                  E + ++   +       G               ++ Y +      L + ++  
Sbjct: 379 VWRTKMLESYQSLEARESWWHLPDGRTLRVIANPHPQGGVTYIYENVTERLDLESRYNAL 438

Query: 319 ENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
             +  ET+D       V+ S G L   NP+F  +      D +     ++ +++      
Sbjct: 439 IRVQGETLDNLSEAVAVFGSDGRLRLWNPAFGSIWDL-PEDQLANMPHINDVVEWCAARP 497

Query: 378 NNAIKPVMLYRSDRTCIAASARL-HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           +       L  S    + +   L   ++      L    +P          +        
Sbjct: 498 DEVQAWSQLAGSVTGLVDSRTHLAGRMERRDGTVLDYATVPLPDGGTLVTFVNVTDSVNV 557

Query: 437 DVDTRINKRKMEIEVMQLCSILEATS 462
           +         +E       + ++  S
Sbjct: 558 ERALVEKNEALEQADQLKNAFIQHVS 583



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/341 (9%), Positives = 81/341 (23%), Gaps = 32/341 (9%)

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
              S  ++     +               G        +  +L  R    +       E+
Sbjct: 7   ACQSTLAAAAPLAEIGLSADKIVWLGALGGACAFAVTAAVAFLRTRRAGDVRMEALARES 66

Query: 321 LTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
                        +V    ++   N     +  +   +D     G+    ++        
Sbjct: 67  RDLRL--------YVDRLESML--NTEEQRMIAWVGAEDRPRVWGVMP--ESSGAPRAPG 114

Query: 381 IKPVMLYRSDRTCIAA-SARLHTIQWNRENSLAMTFIPFEKANQFPENMP---QNGIEPE 436
                    +        A L  ++   +              +               +
Sbjct: 115 QLLAFGSWLEPKSAEVLEAHLGRLRSAGDAFAVTLTTRKRTYVEAVGRTAGGVAVLRLRD 174

Query: 437 DVDTRINKRKMEIEVMQL-------CSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
               R  + ++     +L        ++LEA        + EG +   N A +       
Sbjct: 175 LTGERQAQAELAARNARLSGELHMLHALLEAMPAPAWQRDAEGRVTWANSAYACAVDVAD 234

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
                +    FL+      M          D      ++ + +  E ++  +  +   + 
Sbjct: 235 AATAVRDNVDFLDAAGREAM-----SRDRDDDGCFRARMPIVAAGERRVFEVTDVSANVG 289

Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
            +        DISE  + K +L   ++         +  +A
Sbjct: 290 GA----ALAIDISELDRLKKELRRTEEFHGSTLDQLATAVA 326


>gi|258625183|ref|ZP_05720099.1| Signal transduction histidine-protein kinase barA, putative [Vibrio
           mimicus VM603]
 gi|258582558|gb|EEW07391.1| Signal transduction histidine-protein kinase barA, putative [Vibrio
           mimicus VM603]
          Length = 1053

 Score =  347 bits (891), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 114/423 (26%), Positives = 199/423 (47%), Gaps = 19/423 (4%)

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR--KMEIEVMQLCSILEATSDGIA 466
             L       E  ++  E           ++  I KR  ++ +      +I+E     +A
Sbjct: 115 RELWQEKGRDELLDELHETNRALAQHQAGLEQEIAKRTKELAVSEELSRTIIEGAPSSVA 174

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
           II+ +G+IL  N+     +GY  E+ L +P    L+   P  +   LT  L  + +Q L 
Sbjct: 175 IIDSQGLILLWNKTAITTYGYTAEEALGQPLLTLLKMALPPELAAALTLPLRAEQQQLLN 234

Query: 527 K---ITLGSTKEEKLLSLR--IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE 581
           +        T++  L+ +   + I +L      ++ + D++  K  + +L+ AK  AE+ 
Sbjct: 235 EAFYEAETYTRDGTLVPIDLGVSIFELNGQCQAAMFLRDVTARKAAEQELNEAKAKAEEA 294

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
              KS FLA +SHEIRTP+ AIIG S +       P    +  +Y + I  S  L+L I+
Sbjct: 295 VEVKSMFLANMSHEIRTPMNAIIGMSHLALKTELTP----KQRDYVSKIHSSATLLLGII 350

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILAD 700
           ND+LD SKIE+GK+++     SL+E +     +    A +K + +  S    IP  ++ D
Sbjct: 351 NDILDFSKIEAGKLSIEHIEFSLEEVLHNVSMVTGQKAFDKGLELLFSLPREIPHKLIGD 410

Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDTGVGMTNYELEKA 756
              + Q+ +N+++NA+ FT  G +I +S      +    +++  V DTG+GMT  +    
Sbjct: 411 PLRIGQVVINLVNNAVKFTEQG-EISVSVQVGERQPGRIKLLFNVSDTGIGMTEKQTRNL 469

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI--IFPLYDTS 814
            + F Q   S   +  GTGLGL +++ +V+   G+  + S P  G+       F + +  
Sbjct: 470 FQAFTQADGSTTRKYGGTGLGLSISRRLVELMEGEISVTSKPDAGSCFTFNAWFDVDENQ 529

Query: 815 HPH 817
            PH
Sbjct: 530 APH 532



 Score = 40.4 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 26/205 (12%), Positives = 59/205 (28%), Gaps = 20/205 (9%)

Query: 35  ETEKSKKENPCHDSFEQ--SNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAH 92
           E  + +  +  H++      +     QE    T  L          I         ID+ 
Sbjct: 120 EKGRDELLDELHETNRALAQHQAGLEQEIAKRTKELAVSEELSRTIIEGAPSSVAIIDSQ 179

Query: 93  GYLKEISEELPKTIGNYAFKMIGMRL---------CDVSDILHIDPNNHIGDLLKRQNTW 143
           G +   ++    T G  A + +G  L          +++  L + P       L  +  +
Sbjct: 180 GLILLWNKTAITTYGYTAEEALGQPLLTLLKMALPPELAAALTL-PLRAEQQQLLNEAFY 238

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +T  +  +GT + + + ++   I+  N +    +    +                  K
Sbjct: 239 EAET--YTRDGTLVPIDLGVS---IFELNGQ---CQAAMFLRDVTARKAAEQELNEAKAK 290

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQ 228
                E+K    +    +       
Sbjct: 291 AEEAVEVKSMFLANMSHEIRTPMNA 315


>gi|254490059|ref|ZP_05103252.1| NMT1/THI5 like family [Methylophaga thiooxidans DMS010]
 gi|224464723|gb|EEF80979.1| NMT1/THI5 like family [Methylophaga thiooxydans DMS010]
          Length = 896

 Score =  347 bits (891), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 107/387 (27%), Positives = 196/387 (50%), Gaps = 9/387 (2%)

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
           ++ E  + +  +     E ++L ++L+ T D +  IN+ GII + N+A  +LFGY  +++
Sbjct: 365 MKEELRERKALEATARHESLRLQTLLDNTIDSVITINQSGIIENYNKASVQLFGYQPDEV 424

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK--ITLGSTKEEKLLSLRIIIKKLPF 550
           + K  T+ +  +        +   LS +  + + K        K      + + +    +
Sbjct: 425 IGKNITMLMPASYRDQHKLGMARFLSTEETRIIGKPVEVEALHKSGNTFPIELTLSDFKW 484

Query: 551 SSCYS--LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
              Y       DIS+ K E+  L  AK  AE+ ++ KS+FL+ +SHE+RTPL  I+GFS+
Sbjct: 485 EQKYLFTGIARDISQQKAEQEALLKAKYEAERANNAKSEFLSSMSHELRTPLNGILGFSQ 544

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
           +I +     L N +     N I  SG  +L ++ND+L++S+I+SG++    + V +    
Sbjct: 545 LILSDTEHTL-NEKQRHNINQIIHSGKHLLSLINDVLELSEIDSGRIKTSDDHVPIASVF 603

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
            E   L+Q  A ++ I I          +LAD   +KQ+ + ++SNAI +  +GG++++S
Sbjct: 604 EECQPLLQALAKQQNINIDFQ-DGTDAVVLADFTKLKQVFITLVSNAIKYNKTGGEVLVS 662

Query: 729 TTH-TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
            +  T N  + L + DTG G++     +    F ++   Q+   EG G+GL ++K +++A
Sbjct: 663 ASVQTHNNSLKLTITDTGKGISKDRQAQVFTAFERL--GQERHVEGAGIGLSVSKRLIEA 720

Query: 788 NMGKFYIFSTPAKGTLIEIIFPLYDTS 814
             G+    ST  +GT   I  PL   +
Sbjct: 721 MGGQIDFASTEGQGTSFWIELPLSKNA 747


>gi|254502393|ref|ZP_05114544.1| hypothetical protein SADFL11_2432 [Labrenzia alexandrii DFL-11]
 gi|222438464|gb|EEE45143.1| hypothetical protein SADFL11_2432 [Labrenzia alexandrii DFL-11]
          Length = 756

 Score =  347 bits (891), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 128/653 (19%), Positives = 239/653 (36%), Gaps = 60/653 (9%)

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
                  S   +   D+     P      +  V S+      +D              + 
Sbjct: 110 ASAPLQPSLEGRPLTDLLGPAQPLTVFGERAGVLSIPVNLTGRDGPEPVLATVRHLDGQL 169

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH--------RNHPSLSAYFDEGE 319
            +       ++ +    +      +      S   L+                  +    
Sbjct: 170 GMIAVVQPESV-VFADWRSALSANVTLYVGVSLVLLAIIYGFFSQASRAEQADENYAATR 228

Query: 320 NLTPETVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
                 +       F +       + + S   L   +  DDI     +S L     +   
Sbjct: 229 ARIDTALTHGRCGLFDWDLSRGRMFWSSSLYELLGREPKDDILSFSEVSDLTHPDDIDLL 288

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
              +         +          ++    + + +      + +         GI  +  
Sbjct: 289 GLAE-----HLLESGETLVDETFRMRHADGSWIWLRARGEIQVDPGRAEPHLIGICLDIT 343

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
           +  +   + ++  ++L   +E  S+   + N    ++  N     L   P   +      
Sbjct: 344 EQHLLAEQSQMADLRLRDAIETISEAFVLWNTRNELVICNSNYQSLHNLPPSAVKPGTPY 403

Query: 499 V--FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556
                           +            E       ++ + L +    ++      +  
Sbjct: 404 KDVLAAAENGPASPQPVQLSKRQGGP---EGSYEAQLEDGRWLQIS---ERRTKDGGFVS 457

Query: 557 TMHDISEWKQEKNKL-----------------------------------SHAKKIAEKE 581
              DI+  K+ + +L                                      K  AE  
Sbjct: 458 VGTDITALKKHEERLTESEKRLKATVTDLQRSRKILEVQTRQLSEMAEKYQEEKTRAEAA 517

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
           +  KS+FLA +SHE+RTPL AIIGFS+++  + FGPLG  RY +Y   I  SG  +L+++
Sbjct: 518 NQAKSEFLANISHELRTPLNAIIGFSDIMTQEMFGPLGTDRYADYCKDIYSSGTYLLNVI 577

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701
           ND+LD+SKIE+G+M++  E V+  EA  +A  ++   A+EK I+I    A+N+  +  D 
Sbjct: 578 NDILDMSKIEAGRMSIETEVVNASEAAEDAARIITGAASEKNIVISADVADNL-HVDVDK 636

Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761
           R++KQ+ LN+L+NA+ FTP  G + +       ++V   V DTG+G++  ++E+  KPF 
Sbjct: 637 RALKQVLLNLLANAVKFTPDHGTVTLKARPR-GDKVRFEVTDTGIGISERDIERLAKPFV 695

Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           Q+ N      +G+GLGL +A+++V+ + GK  I S   KGT++    PL  T 
Sbjct: 696 QVENQFTKTHQGSGLGLAIARSLVELHGGKLAIESEVKKGTVVSFSLPLARTD 748



 Score = 45.0 bits (105), Expect = 0.048,   Method: Composition-based stats.
 Identities = 32/251 (12%), Positives = 57/251 (22%), Gaps = 11/251 (4%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGM--RLCDVSDILHIDPNNHIGDLLKRQNT 142
           F W++   G     S  L + +G      I     + D++    ID       LL+   T
Sbjct: 243 FDWDLSR-GR-MFWSSSLYELLGREPKDDILSFSEVSDLTHPDDIDLLGLAEHLLESGET 300

Query: 143 WYGKT-TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN-DPRALGKRL 200
              +T  +   +G+  ++ +           R        GI       +          
Sbjct: 301 LVDETFRMRHADGS--WIWLRARGEIQVDPGRAEPHL--IGICLDITEQHLLAEQSQMAD 356

Query: 201 DKKFSHLHEIKKG-HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
            +    +  I +       + +  I +      H    + V   T Y             
Sbjct: 357 LRLRDAIETISEAFVLWNTRNELVICNSNYQSLHNLPPSAVKPGTPYKDVLAAAENGPAS 416

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
           P            E  +   L      Q       +                     E E
Sbjct: 417 PQPVQLSKRQGGPEGSYEAQLEDGRWLQISERRTKDGGFVSVGTDITALKKHEERLTESE 476

Query: 320 NLTPETVDKCP 330
                TV    
Sbjct: 477 KRLKATVTDLQ 487


>gi|52081411|ref|YP_080202.1| two-component sensor histidine kinase [Bacillus licheniformis ATCC
           14580]
 gi|52786787|ref|YP_092616.1| PhoR [Bacillus licheniformis ATCC 14580]
 gi|319647319|ref|ZP_08001541.1| sensor protein [Bacillus sp. BT1B_CT2]
 gi|52004622|gb|AAU24564.1| two-component sensor histidine kinase [Bacillus licheniformis ATCC
           14580]
 gi|52349289|gb|AAU41923.1| PhoR [Bacillus licheniformis ATCC 14580]
 gi|317390666|gb|EFV71471.1| sensor protein [Bacillus sp. BT1B_CT2]
          Length = 581

 Score =  347 bits (891), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 103/473 (21%), Positives = 191/473 (40%), Gaps = 49/473 (10%)

Query: 339 GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398
            +L   N    +L          I  GL   + +   +   +   V +  +        A
Sbjct: 150 DSLQDINQKIWILLGVSLGTAFLIIAGLGARITSQYTNPIESATQVAIELAKG---NYKA 206

Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458
           R        E  L+ +     +  Q                     R  E++  +L +++
Sbjct: 207 RTFN---EDETMLSQSINMLAQNLQDMT------------------RAQEMQRDRLQTVI 245

Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL---TE 515
           E    G+ +I+ +G I   NRA  K F    + +L   +   LE      +   +     
Sbjct: 246 ENIDSGLILIDGKGYIHLVNRAYQKQFHVEADQLLYHFYHEVLEHEEIINLIEEIFMTEA 305

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575
            +    +  ++        +   +     I          L  HD++E KQ +       
Sbjct: 306 KVRKMFKLPIKIERRYFEVDGVPI-----IGINDEWKGIVLVFHDMTERKQLEE------ 354

Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
                    + DF+A VSHE++TP+T+I GF+E + +           +++ + I +  +
Sbjct: 355 --------MRKDFVANVSHELKTPITSIKGFTETLLDGAMNE--RETLLQFLSIILKESS 404

Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695
            +  ++ DLLD+SKIE     L+ +  ++ E ++E   L++  A EK I +     +   
Sbjct: 405 RLQTLIQDLLDLSKIEQQNFTLNIQNCNIGEILAEIEMLLKNKAEEKGITLTLEKPDKPA 464

Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755
               D   +KQI LN+++NA+ +TP  G + IS     +  V ++VRDTG+G+   E+ +
Sbjct: 465 VASGDPHRLKQIFLNLVNNALTYTPEDGSVTISADVLEDA-VQVKVRDTGIGIKQSEIPR 523

Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
             + F +I   +     GTGLGL + K +V+A+ G+  + S   KGT   +  
Sbjct: 524 IFERFYRIDKDRSRNSGGTGLGLAIVKHLVEAHQGEIDVESERGKGTEFTVRL 576


>gi|302341533|ref|YP_003806062.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM
           2075]
 gi|301638146|gb|ADK83468.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM
           2075]
          Length = 993

 Score =  347 bits (891), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 115/666 (17%), Positives = 232/666 (34%), Gaps = 49/666 (7%)

Query: 180 GFGIVHVNRVDNDPRALGKRLD---KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL-- 234
           G+      R + +  A  + L     K+  + E       V      +         +  
Sbjct: 207 GYLTYREMRAEGERAAAQEVLRQTLDKYRAVLEASPDPVIVYNYVGLVDYVNPAFSRVFG 266

Query: 235 -RMKNKVSSLTEYYAHKD-DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL 292
            R    +    ++    + +        +    +  L  +    T +             
Sbjct: 267 WRADEVLGGKIDFVPDDEKEATLAAINAVYDHPDGLLSFESRRLTRDGRARNVMVSLAVY 326

Query: 293 QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI-----PFFVYSHGNLFYANPS 347
           + +       + +    +      E    + E               +   G + + N +
Sbjct: 327 RGDGGAPLGMVVNLTDITSMKRSAEALRESEEKFRSISANALDGVVMIDPQGRITFWNQA 386

Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
              +  Y + + +     L  LL  P+   +           D     A  R+  +   R
Sbjct: 387 ATAIFGYAADETLGRE--LHPLLAPPRYHADYVKAFAEF--GDSGTGKAVGRMLELVARR 442

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
           +N           + Q        GI  +  + +  +  +     +  +ILE     IAI
Sbjct: 443 KNGQEFPAELSVSSLQLHGQWYAVGIVRDITERKQAEEALRQSESRYRTILETVPYSIAI 502

Query: 468 IN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
            + R G  L  N     L G+  +D L K        N P        ++      +   
Sbjct: 503 SDLRSGANLEINDGFCLLSGHSRQDALGKTALDLGLYNRPEDHLTLRDQLERDG--EING 560

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEKESS- 583
           +      K+ +LL   + +++  ++          D+S  +Q + + +  +   ++    
Sbjct: 561 QPVTYRAKDGRLLECLVSVRRFVYAGRPCLLSVAQDVSALRQAEREQARLQAQLQRAQRM 620

Query: 584 -HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
                    V+H+    L AI G++++I      P  + +   YA  ID +     D+V 
Sbjct: 621 EAIGTLAGGVAHDFNNILQAISGYTQLI---GGHPGLDQKVRRYAEDIDLAARRATDLVK 677

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702
            LL  S+    K+    + V L+  +  A+++++     K + I T    ++  + AD  
Sbjct: 678 RLLTFSR----KVEPALQKVDLNRQIDHAVAMLERTIP-KMVRITTRLDPDLKAVKADPG 732

Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTT--------------HTSNEEVILRVRDTGVGM 748
            ++Q+ +N+ +NA    P GG+++I T                T++E V+LRV D+G+GM
Sbjct: 733 QMEQVLMNLGTNARDAMPEGGELMIETQNVRAEDLSPGAACQLTADEYVMLRVSDSGMGM 792

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
                +K   PF          G+GTGLGL +   +++ + G+   +S P +GT+ EI  
Sbjct: 793 DAETQKKIFDPFFTTKG----VGQGTGLGLSIVYGIIEGHGGRISCYSQPGQGTVFEICL 848

Query: 809 PLYDTS 814
           P+ D S
Sbjct: 849 PVADDS 854



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 40/417 (9%), Positives = 104/417 (24%), Gaps = 44/417 (10%)

Query: 93  GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTW--------Y 144
           G +  ++    +  G  A +++G ++          P++     L   N           
Sbjct: 252 GLVDYVNPAFSRVFGWRADEVLGGKI-------DFVPDDEKEATLAAINAVYDHPDGLLS 304

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            ++     +G    V + LA            G      +             +  ++KF
Sbjct: 305 FESRRLTRDGRARNVMVSLAV--YRGDGGAPLGM--VVNLTDITSMKRSAEALRESEEKF 360

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSS-----LTEYYAHKDDVLKT 256
             +         +   +  I                  +       L     H D V   
Sbjct: 361 RSISANALDGVVMIDPQGRITFWNQAATAIFGYAADETLGRELHPLLAPPRYHADYVKAF 420

Query: 257 EKYPLLTSEESSLPEQE-DFHTINLNQYTKKQYFGTLQNNSK--ESFEYLSHRNHPSLSA 313
            ++    + ++     E      N  ++  +    +LQ + +                  
Sbjct: 421 AEFGDSGTGKAVGRMLELVARRKNGQEFPAELSVSSLQLHGQWYAVGIVRDITERKQAEE 480

Query: 314 YFDEGENLTPETVDKCPIPFFV--YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
              + E+     ++  P    +     G     N  F LL+ +   D +        L +
Sbjct: 481 ALRQSESRYRTILETVPYSIAISDLRSGANLEINDGFCLLSGHSRQDALGKTALDLGLYN 540

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
            P+       +       +   +   A       +      +  +        P  +   
Sbjct: 541 RPEDHLTLRDQLERDGEINGQPVTYRA------KDGRLLECLVSVRRFVYAGRPCLLSVA 594

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
                       + +++ ++ +   +     + I  +   G+    N  +  + GY 
Sbjct: 595 QDVSALRQAEREQARLQAQLQRAQRM-----EAIGTL-AGGVAHDFNNILQAISGYT 645



 Score = 68.5 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 58/601 (9%), Positives = 144/601 (23%), Gaps = 89/601 (14%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI--LHIDPNNHIGDLLKRQNTWYG- 145
           ID  G +   ++      G  A + +G  L  +      H D      +     ++  G 
Sbjct: 374 IDPQGRITFWNQAATAIFGYAADETLGRELHPLLAPPRYHADYVKAFAEF---GDSGTGK 430

Query: 146 ------KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199
                 +       G      + +++L ++ +      +   GIV             ++
Sbjct: 431 AVGRMLELVARRKNGQEFPAELSVSSLQLHGQ------WYAVGIVRDITERKQAEEALRQ 484

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDI-------------FSQQSPPPHLRMKNKVSSLTEY 246
            + ++  + E      ++   +                 S+Q       +   + +  E 
Sbjct: 485 SESRYRTILETVPYSIAISDLRSGANLEINDGFCLLSGHSRQDALGKTALDLGLYNRPED 544

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
           +    D L+ +   +     +   +        ++             +  +    L   
Sbjct: 545 HLTLRDQLERDG-EINGQPVTYRAKDGRLLECLVSVRRFVYAGRPCLLSVAQDVSALRQA 603

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
                            E +         +   N+  A   +  L               
Sbjct: 604 EREQARLQAQLQRAQRMEAIGTLAGGVA-HDFNNILQAISGYTQLIG------------- 649

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA-MTFIPFEKANQFP 425
                 P L          +  + R       RL T     E +L  +            
Sbjct: 650 ----GHPGLDQKVRRYAEDIDLAARRATDLVKRLLTFSRKVEPALQKVDLNRQIDHAVAM 705

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL--------EATSDGIAIINREGIILST 477
                  +         + + ++ +  Q+  +L        +A  +G      E +I + 
Sbjct: 706 LERTIPKMVRITTRLDPDLKAVKADPGQMEQVLMNLGTNARDAMPEG-----GELMIETQ 760

Query: 478 NRAVSKLFGYPVEDILRKPFTVF--------LEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
           N     L       +    + +         ++  T   +         +     L    
Sbjct: 761 NVRAEDLSPGAACQLTADEYVMLRVSDSGMGMDAETQKKIFDPFFTTKGVGQGTGLGLSI 820

Query: 530 LG--STKEEKLLSLRIIIKKLPFSSCYSLTMHD-ISEWKQEKNKLSHAKKIAEKESSHKS 586
           +          +S      +            D ++E +  +       +   +      
Sbjct: 821 VYGIIEGHGGRISCYSQPGQGTVFEICLPVADDSLTEREAPEVVTVRQAQSNGETILVVD 880

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
           D  A            I+  S  +       +   R  E A  I R+    + +V  ++D
Sbjct: 881 DEAA------------ILDVSTELLQGAGYKVITARCGEDALEIYRTRGQAISLV--IMD 926

Query: 647 I 647
           +
Sbjct: 927 L 927


>gi|330938948|gb|EGH42439.1| PAS protein [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 576

 Score =  347 bits (891), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 116/520 (22%), Positives = 205/520 (39%), Gaps = 46/520 (8%)

Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS-----TLLDAPKLSDNNAIKPVM-- 385
                HG +   N     +  Y S D ++            L+       +    P+   
Sbjct: 48  IATDEHGVIQIFNVGAERMLGYHSEDVVDKITPADISDPAELIIRAAALSHELNTPITPG 107

Query: 386 ---LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
              L       I     L  I+ +     AM        +     +    I  ++   + 
Sbjct: 108 FEALVFKASRGIEDIYELTYIRKDGSRLSAM-VSVTSLRDSAETIIGYLLIGTDNTARKQ 166

Query: 443 NK-------RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
            +       +++  +     S++E+  D + + + +GII   N+ +  L G   ++++  
Sbjct: 167 EEEAQALLDQRLRDQQFYTRSLIESNIDALMMTDPQGIISDVNKQMMALTGRTRDELIGA 226

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--C 553
           P   F     P+  +  +  +LS       E         E ++S               
Sbjct: 227 PCKNFF--TDPASADAAIKRVLSEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRKLKG 284

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
                 D++E K+ +  L       E  S  KS+FLA +SHE+RTPL A+IGFSE +++ 
Sbjct: 285 VFAAARDVTERKRFERTLEEKNIELEHASHMKSEFLATMSHELRTPLNAVIGFSEALRDG 344

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
             G + +     Y   I  SG  +L ++ND+LD+SK+E+G M L  E V LDE +S ++ 
Sbjct: 345 MVGDMTDA-QRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELESVDLDELLSNSLL 403

Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
           +V+  A  + I ++         +  D R  KQI  N+L+NA+ F+  GG + ++     
Sbjct: 404 IVREQAALQHIQLKLETEAEFGELELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRLVP 463

Query: 734 -----------------------NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
                                   + + L V DTG+G+   ++ K  K F QI +    +
Sbjct: 464 ASQAGLIDGDWPTYGFALPSGNCEQFLELSVSDTGIGIAQSDMNKLFKAFSQIDSGLARK 523

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            EGTGLGL + K + + + G   + S    G    +  P+
Sbjct: 524 FEGTGLGLAMVKQLTELHGGCVAVASVKDLGARFVVWLPI 563



 Score = 51.2 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 53/161 (32%), Gaps = 19/161 (11%)

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
           +       + V+TR  K  ++   +Q  +I  +        +  G+I   N    ++ GY
Sbjct: 11  VDAQSRAEKIVETRRQKILLKTGALQ-DAIFNSAYFSSIATDEHGVIQIFNVGAERMLGY 69

Query: 488 PVEDILRK-PFTVFLEQNTPSVMNHYLTEILSLDLRQTLE-------------KITLGST 533
             ED++ K       +     +    L+  L+  +    E                    
Sbjct: 70  HSEDVVDKITPADISDPAELIIRAAALSHELNTPITPGFEALVFKASRGIEDIYELTYIR 129

Query: 534 KEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNK 570
           K+   LS  + +  L  S+     Y L   D +  KQE+  
Sbjct: 130 KDGSRLSAMVSVTSLRDSAETIIGYLLIGTDNTARKQEEEA 170



 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/238 (11%), Positives = 66/238 (27%), Gaps = 10/238 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            D  G + ++++++    G    ++IG    +         +  I  +L        + T
Sbjct: 199 TDPQGIISDVNKQMMALTGRTRDELIGAPCKNFFTDP-ASADAAIKRVLSEHKVSDYELT 257

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           +   +GT     +   A   + R+R+  G   F                +  + +  H  
Sbjct: 258 VRAYDGTETV--VSYNAATFHDRDRKLKGV--FAAARDVTERKRFERTLEEKNIELEHAS 313

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK-VSSLTEYYAHKDDVLKTEKYPLLTSEES 267
            +K    +    +              +++  V  +T+        +      LL+    
Sbjct: 314 HMKSEFLATMSHELRTPLNAVIGFSEALRDGMVGDMTDAQRRYIGDIFNSGQHLLS---- 369

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
            + +  D   +     T +     L      S   +  +          E E    E 
Sbjct: 370 LINDILDLSKVEAGMMTLELESVDLDELLSNSLLIVREQAALQHIQLKLETEAEFGEL 427



 Score = 45.0 bits (105), Expect = 0.055,   Method: Composition-based stats.
 Identities = 27/270 (10%), Positives = 70/270 (25%), Gaps = 36/270 (13%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGM-RLCDVSDILHI------------DPNNHIGD 135
            D HG ++  +    + +G ++  ++      D+SD   +             P     +
Sbjct: 50  TDEHGVIQIFNVGAERMLGYHSEDVVDKITPADISDPAELIIRAAALSHELNTPITPGFE 109

Query: 136 LL----KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN 191
            L     R      + T    +G+   +   ++   +        G+   G    N    
Sbjct: 110 ALVFKASRGIEDIYELTYIRKDGS--RLSAMVSVTSLRDSAETIIGYLLIGT--DNTARK 165

Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL------------RMKNK 239
                   LD++   L + +    S+ +   D      P   +            R +++
Sbjct: 166 QEEEAQALLDQR---LRDQQFYTRSLIESNIDALMMTDPQGIISDVNKQMMALTGRTRDE 222

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
           +          D          + SE      +      +  +        T  +  ++ 
Sbjct: 223 LIGAPCKNFFTDPASADAAIKRVLSEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRKL 282

Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
               +     +    F+         ++  
Sbjct: 283 KGVFAAARDVTERKRFERTLEEKNIELEHA 312


>gi|212634459|ref|YP_002310984.1| PAS domain-containing protein [Shewanella piezotolerans WP3]
 gi|212555943|gb|ACJ28397.1| PAS domain protein [Shewanella piezotolerans WP3]
          Length = 1192

 Score =  347 bits (891), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 105/518 (20%), Positives = 198/518 (38%), Gaps = 49/518 (9%)

Query: 314 YFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
             +         +         + +HG +   NP+   L  YK  + +     L   L  
Sbjct: 225 ALENANTRLSTILGTALDGYIIINTHGEISEVNPAVSRLFGYKDSELLGQNVSLLLPLAE 284

Query: 373 PKLSDN--------------NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
             + D                  + +M    +         +  +  + E          
Sbjct: 285 RGMHDVYIRKYLDSGESKIIGKGRELMAQHKEGELFPIELSISKMILDGE---------- 334

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
                    +   G+  +  D +  +   +     L + LE + DG+  I+  G I   N
Sbjct: 335 ---------LLFLGLVKDLSDVKRAQVAAQRTESILLATLEGSKDGLITIDITGEIQEVN 385

Query: 479 RAVSKLFGYPVEDILRKPFT-VFLEQNTPSVMNHYLTEILSLDLRQTL--EKITLGSTKE 535
            +   +F      ++ +       +    +     L E       +          +  +
Sbjct: 386 DSACLMFQAHSSALVGERMETCLFQGGARATFREILEEYRLTGAGKAFKNATEIFATRFD 445

Query: 536 EKLLSLRIIIKK--LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
            KLL + + +    L      +  + DIS   + + +L  AK+ AE+ S  KS FLA +S
Sbjct: 446 GKLLPIELTLIPVQLGEEMLLTAFIRDISRRMEYETQLKLAKEQAEQGSKAKSRFLATMS 505

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HEIR+PL A++G  +++ + R     N     YAN    +G  +L  +ND+LD SKIE+G
Sbjct: 506 HEIRSPLNAVLGSVDLLLDSRL----NKEQRIYANTAKEAGTALLSTINDILDFSKIEAG 561

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNIL 712
           +M L     S  + V++ + ++   A +K I + +    N+P  ++ D + ++Q+  N++
Sbjct: 562 QMLLEKSSFSAAKLVTQVLQILSPKAQDKGITLASFVNCNVPESLIGDGQRLRQVLQNLV 621

Query: 713 SNAIHFTPSGGQIIIST----THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
            NAI F+ SGG I +      +     ++   V D G+G++        K F Q+ +   
Sbjct: 622 DNAIKFS-SGGCIAVEMWLLESQQGKAQLCCTVTDQGIGISEEAQLTLFKEFSQVHDEHN 680

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
               GTGLGL +   ++    G   + S   +G+    
Sbjct: 681 TNYSGTGLGLAICAELITRMEGSIAVRSEQGRGSCFSF 718



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 36/172 (20%), Positives = 69/172 (40%), Gaps = 6/172 (3%)

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
           +P    ++  +         E +D +     +E    +L +IL    DG  IIN  G I 
Sbjct: 197 VPVTSQDEIGQAAHAFNQMVEQIDIKT--HALENANTRLSTILGTALDGYIIINTHGEIS 254

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL--EKITLGST 533
             N AVS+LFGY   ++L +  ++ L      + + Y+ + L     + +   +  +   
Sbjct: 255 EVNPAVSRLFGYKDSELLGQNVSLLLPLAERGMHDVYIRKYLDSGESKIIGKGRELMAQH 314

Query: 534 KEEKLLSLRIIIKK--LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
           KE +L  + + I K  L     +   + D+S+ K+ +      + I      
Sbjct: 315 KEGELFPIELSISKMILDGELLFLGLVKDLSDVKRAQVAAQRTESILLATLE 366



 Score = 41.9 bits (97), Expect = 0.50,   Method: Composition-based stats.
 Identities = 26/252 (10%), Positives = 65/252 (25%), Gaps = 18/252 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTWY--- 144
           I+ HG + E++  + +  G    +++G  +  +  +     ++  I   L    +     
Sbjct: 247 INTHGEISEVNPAVSRLFGYKDSELLGQNVSLLLPLAERGMHDVYIRKYLDSGESKIIGK 306

Query: 145 -GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +      EG    + + ++ + +   + E       G+V         +   +R +  
Sbjct: 307 GRELMAQHKEGELFPIELSISKMIL---DGELL---FLGLVKDLSDVKRAQVAAQRTESI 360

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLKT---- 256
                E  K          +I                  V    E    +     T    
Sbjct: 361 LLATLEGSKDGLITIDITGEIQEVNDSACLMFQAHSSALVGERMETCLFQGGARATFREI 420

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
            +   LT    +     +      +          +     E     +     S    ++
Sbjct: 421 LEEYRLTGAGKAFKNATEIFATRFDGKLLPIELTLIPVQLGEEMLLTAFIRDISRRMEYE 480

Query: 317 EGENLTPETVDK 328
               L  E  ++
Sbjct: 481 TQLKLAKEQAEQ 492


>gi|255039493|ref|YP_003090114.1| multi-sensor hybrid histidine kinase [Dyadobacter fermentans DSM
           18053]
 gi|254952249|gb|ACT96949.1| multi-sensor hybrid histidine kinase [Dyadobacter fermentans DSM
           18053]
          Length = 1204

 Score =  347 bits (891), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 110/515 (21%), Positives = 194/515 (37%), Gaps = 27/515 (5%)

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLL----TKYKSVDDIE 361
                     +         D      + V     L   N ++  L       +      
Sbjct: 415 ARKQSEEELSKYLARLNAIFDSSSHLIWSVNKSLQLTSFNRNYADLIHNQLGVRPSLQSS 474

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                  ++               L                I       + + F      
Sbjct: 475 AEKFGWRMVGNSNRRTLETKYRQALR---GEPQYFE---FKIDRKDAGEMWLEFYLNPIH 528

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
                    +GI  +    +  +  +         I E   D    INR G I   +++V
Sbjct: 529 YADGVIEEVSGIARDITRRKEAELSLRHSEELFRGIFENLQDIYCRINRLGEITMISQSV 588

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
            K  GY  E+++    T F        ++  L  +                 K+      
Sbjct: 589 LKRLGYLPEEVIGHKITEFFA--DKKRIHSALIRLRKTK--SLRNFEITMYRKDGTERQF 644

Query: 542 RIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
            I +             ++   DI+E K+ + +L  AK+ AE+    K  FLA +SHEIR
Sbjct: 645 MINMLMFTNDKGKPTEVAVLARDITELKRNELELLKAKEHAERSLKVKEGFLANMSHEIR 704

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TP+  +IG  +++         N    +Y   I RS   +L+I+ND+LD+SKIE+GKM L
Sbjct: 705 TPMNGVIGMIDLLGETPL----NTEQKDYVLTIKRSSETLLNILNDILDLSKIEAGKMEL 760

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAI 716
           H  P++++E + + +SL    A  K   +      +IP+ I+AD   + QI  N+ SNA+
Sbjct: 761 HEAPIAVEELLLKLVSLFGQTAKSKGNTLSYHVGPDIPKFIIADQTRLLQIMSNLTSNAL 820

Query: 717 HFTPSGG-QIIISTTHTSN--EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
            FT +G  ++ ++         ++ + V+D+G+G++  + +     F Q+ NS +    G
Sbjct: 821 KFTENGSVKVFLTLVKKDGLFHKIKVDVQDSGIGISATDKQILFTSFTQLDNSSRKSFGG 880

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           TGLGL ++K +     G+  + ST  +G+     F
Sbjct: 881 TGLGLAISKQLCALMNGEIGVESTLGEGSTFWFTF 915



 Score = 88.9 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/289 (10%), Positives = 92/289 (31%), Gaps = 16/289 (5%)

Query: 314 YFDEGENLTPETVDKCPIPFFVYSHGNLFY-ANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                      T+    +    +S   +    +P  L+ T +   + +        L+  
Sbjct: 5   LSQTDWQTIHHTLQHLNLIGITFSPDFVIRSVSPHALMKTGWHESE-LVGFSIFDKLIPR 63

Query: 373 PKLSDNN---AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
            +  +             + ++  +   A+  T++         +        Q  +   
Sbjct: 64  DEEHEVRQMLEEGIQGKRKLEQREVPFLAQKGTLR-------TFSINSVLIHQQNGDVEC 116

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
              +  +    R  +  +     QL  +++ TSD I ++  +G  +  N+A  ++ GY +
Sbjct: 117 ITLVGDDITRRRRMESAIAKSNSQLQDLVDNTSDLIQLVAIDGKFIFVNKAWREVLGYGL 176

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
           ++I        L           L +I       + E + +    ++  ++  +  +   
Sbjct: 177 DEIASMRMEDILHPQHKEEALEQLKKIEQGIANPSFEAVFMNRDGKKVFVAGSVNCRFDN 236

Query: 550 FSS-CYSLTMHDISEWKQEK--NKLSHAKKIAEKESSHKSDFLARVSHE 595
                +   ++D +E  + +    L ++       + +  +F   + H+
Sbjct: 237 GKPTAFRCILNDFTEKIRAEKAQNLYYSIANWTVNTQNLDEFYHGI-HD 284



 Score = 65.8 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 22/167 (13%), Positives = 55/167 (32%), Gaps = 11/167 (6%)

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
                      +G     +  + ++ ++   + +L +I +++S  I  +N+   + S NR
Sbjct: 396 DTRDLELLEFISGQVAMAIARKQSEEELSKYLARLNAIFDSSSHLIWSVNKSLQLTSFNR 455

Query: 480 AVSKL----FGYPVE-DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
             + L     G         + F   +  N+                 Q  E       K
Sbjct: 456 NYADLIHNQLGVRPSLQSSAEKFGWRMVGNSNRRTLETKYRQALRGEPQYFEFKI--DRK 513

Query: 535 EEKLLSLRIIIKKLPFSSCYS----LTMHDISEWKQEKNKLSHAKKI 577
           +   + L   +  + ++            DI+  K+ +  L H++++
Sbjct: 514 DAGEMWLEFYLNPIHYADGVIEEVSGIARDITRRKEAELSLRHSEEL 560


>gi|94265110|ref|ZP_01288875.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93454397|gb|EAT04695.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 699

 Score =  347 bits (891), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 90/418 (21%), Positives = 182/418 (43%), Gaps = 18/418 (4%)

Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465
             +  L    +          +    G   +    R  ++++     +L SIL++   G+
Sbjct: 30  RGQWWLLPLALLLGLLPAAYLDHLLAGFRRDSEQQRQTEQRLRDSEGRLSSILQSIGAGV 89

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE---QNTPSVMNHYLTEILSLDLR 522
              +++G +   N    +L G+ + D L +P    L    + +   +   L ++L     
Sbjct: 90  IATDQQGRLAFLNPVAERLTGWDLVDALNRPVGEVLALTDEESGQPLPSPLKQVLEDGEI 149

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL---TMHDISEWKQEKNKLSHAKKIAE 579
               +  + + +  +   +   +  +   S          D    ++ ++ L  AK+ AE
Sbjct: 150 IDWRERLMLTPRRGEPCPVACTVAPIASFSGIIGAVFVFRDTRREREIQSHLLAAKEQAE 209

Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639
                K +FLA +SHEIRTPLTA++G ++++   R     + +  +Y      +G  +LD
Sbjct: 210 GALRAKGEFLAGMSHEIRTPLTAVLGMADLLDKTRL----DSQQRQYVAASRAAGENLLD 265

Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RIL 698
           ++N +LD+SKIE+G++ +      LD+ V +   ++ L A ++ +      +   P  ++
Sbjct: 266 LINGILDLSKIEAGRLEVESVEFDLDQLVRQTCEIMNLRARQQGLEFVHHSSCAGPCLVM 325

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS------NEEVILRVRDTGVGMTNYE 752
            D   ++Q+ +N++ NAI FT  G ++++                   V DTG+G+   +
Sbjct: 326 GDPTRIRQVLVNLIGNAIKFTEEG-RVMVELACLPAAPPYPGPFFRCTVSDTGIGIPAAK 384

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            E   + F Q  +S   R  GTGLGL +++ +V    G+  + S    G+   +  PL
Sbjct: 385 QEMIFEDFAQADSSMTRRYGGTGLGLAISRKLVTMMGGQISLVSREGGGSTFTMEIPL 442



 Score = 48.9 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/158 (14%), Positives = 37/158 (23%), Gaps = 4/158 (2%)

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEI 362
                        + E      +             G L + NP    LT +  VD +  
Sbjct: 60  DSEQQRQTEQRLRDSEGRLSSILQSIGAGVIATDQQGRLAFLNPVAERLTGWDLVDALNR 119

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
             G   L    + S      P+     D   I    RL       E    +       A+
Sbjct: 120 PVG-EVLALTDEESGQPLPSPLKQVLEDGEIIDWRERLMLTPRRGEP-CPVACTVAPIAS 177

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
                +    +  +    R  +  +     Q    L A
Sbjct: 178 FSG-IIGAVFVFRDTRREREIQSHLLAAKEQAEGALRA 214



 Score = 41.6 bits (96), Expect = 0.53,   Method: Composition-based stats.
 Identities = 18/144 (12%), Positives = 42/144 (29%), Gaps = 13/144 (9%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP----NNHIGDLLKRQNT-- 142
            D  G L  ++    +  G      +   + +V  +   +      + +  +L+      
Sbjct: 92  TDQQGRLAFLNPVAERLTGWDLVDALNRPVGEVLALTDEESGQPLPSPLKQVLEDGEIID 151

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRG-FGIVHVNRVDNDPRALGKRLD 201
           W  +  L P  G    V   +A +        FSG  G   +    R + + ++      
Sbjct: 152 WRERLMLTPRRGEPCPVACTVAPIA------SFSGIIGAVFVFRDTRREREIQSHLLAAK 205

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIF 225
           ++       K    +    +    
Sbjct: 206 EQAEGALRAKGEFLAGMSHEIRTP 229


>gi|254415827|ref|ZP_05029584.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196177254|gb|EDX72261.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 1218

 Score =  347 bits (891), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 87/633 (13%), Positives = 216/633 (34%), Gaps = 28/633 (4%)

Query: 188  RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP---PPHLRMKNKVSSLT 244
                + + +  +L +K + +    +G  ++   K +                   +   +
Sbjct: 600  HEIAERQQVEIQLRQKLAAIEATTEG-IAILNAKGEYTYLNPAHVQLFGYDTSEALLGKS 658

Query: 245  EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY-L 303
              + +  + +   +  + T  +     + +   +  N     +                 
Sbjct: 659  WRHLYPPEEITRFERDIFTILQQQGYWRGEAVALRQNGSKFAEEVSLTLTPEGNFICICR 718

Query: 304  SHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEI 362
                     A     E     T ++  +              N +F  +  Y   + +  
Sbjct: 719  DITQRQQTEAALRTSEERFRSTFEQVTVGITHTGWDDRFLRVNQTFCDIVGYTVDELLTK 778

Query: 363  AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
                   +  P   D +      L   +    +   R   I+ +  + + +         
Sbjct: 779  TFVD---ITHPDDVDGDKYYVNQLLAGEIKTFSMEKRY--IRKDG-SIVWVNLRGSLVRK 832

Query: 423  QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAV 481
               E     G+  +  D +  +  ++    +   + E   +   I +  +  ++  + A 
Sbjct: 833  STGELDYFVGVIEDIRDRKRTEAALQESEQRFRQLAENIHEVFWITDVAKSQMIYVSPAY 892

Query: 482  SKLFGYPVEDILRKPFTVF--LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
             +++G   + I   P +    +       +     +    +      +         +  
Sbjct: 893  QQIWGRSCQSIYDNPLSFVETIHPEDRERVMAAFAKQARGE----YHEDYRIIQPGGEQR 948

Query: 540  SLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
             +R     +  +S           DI+E+KQ + ++  A    ++ +  KS F++  SHE
Sbjct: 949  WIRDRAFPVYDTSGQVYRIVGIAEDITEYKQAEQEIRQALAREQELNELKSRFISMTSHE 1008

Query: 596  IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
             RTPLT I+  +E +           +   +   I  + + +  ++ND+L + K E+GK+
Sbjct: 1009 FRTPLTTILSSTE-LLKYYSSKFTEEKKQIHFERIQSNVHHITQMLNDILLLGKAEAGKL 1067

Query: 656  NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715
            + +   + + +   + +   Q      R  +  +    +  +  D + ++ I  N+LSNA
Sbjct: 1068 DFNPAQMDVRQFCQQLVEEFQ-QGIGHRHSLCFTHQGQLTPVSLDEKLLRHILGNLLSNA 1126

Query: 716  IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
            + ++P    + +  T   N E+I R++D G+G++  + ++  + F +   +      GTG
Sbjct: 1127 LKYSPIDRPVCLELTCRHN-ELIFRIKDQGIGISETDQQRLFESFHR--GTNVGNISGTG 1183

Query: 776  LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            LGL + K  VD + G   + S    GT   ++ 
Sbjct: 1184 LGLSIVKKAVDRHGGTINLESKLGVGTTFTVVI 1216



 Score =  117 bits (292), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 48/446 (10%), Positives = 124/446 (27%), Gaps = 30/446 (6%)

Query: 22  TQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQN-QESVSNTNYLDSENTFVFDPIP 80
           T+ + +K+++   +  K + E    +   Q   ++Q  Q  ++    ++ +       I 
Sbjct: 561 TELIQRKRVELELQQAKQELERRVEERTAQLQQSNQKLQHEIAERQQVEIQLRQKLAAIE 620

Query: 81  RTVRFTWNIDAHGYLKEISEELPKTIGN-YAFKMIGMRLCDVSDILHIDP-NNHIGDLLK 138
            T      ++A G    ++    +  G   +  ++G     +     I      I  +L+
Sbjct: 621 ATTEGIAILNAKGEYTYLNPAHVQLFGYDTSEALLGKSWRHLYPPEEITRFERDIFTILQ 680

Query: 139 RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
           +Q  W G+       G+     + L   P       F       I           A  +
Sbjct: 681 QQGYWRGEAVALRQNGSKFAEEVSLTLTP----EGNF-----ICICRDITQRQQTEAALR 731

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLK 255
             +++F    E      +                      +   ++       H DDV  
Sbjct: 732 TSEERFRSTFEQVTVGITHTGWDDRFLRVNQTFCDIVGYTVDELLTKTFVDITHPDDVDG 791

Query: 256 TE--KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE----SFEYLSHRNHP 309
            +     LL  E  +   ++ +   + +          ++ ++ E           R+  
Sbjct: 792 DKYYVNQLLAGEIKTFSMEKRYIRKDGSIVWVNLRGSLVRKSTGELDYFVGVIEDIRDRK 851

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
              A   E E    +  +     F++       + Y +P++  +         +      
Sbjct: 852 RTEAALQESEQRFRQLAENIHEVFWITDVAKSQMIYVSPAYQQIWGRSCQSIYDNPLS-- 909

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
                    ++         +  R       R   I         +    F   +   + 
Sbjct: 910 --FVETIHPEDRERVMAAFAKQARGEYHEDYR---IIQPGGEQRWIRDRAFPVYDTSGQV 964

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQ 453
               GI  +  + +  ++++   + +
Sbjct: 965 YRIVGIAEDITEYKQAEQEIRQALAR 990



 Score = 81.6 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 30/240 (12%), Positives = 74/240 (30%), Gaps = 22/240 (9%)

Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
                +   ++ ++       +              ++  +           L   +   
Sbjct: 527 APRQWQTSEIELLQQLAVQVGIGIQQSSLFEQVQTELIQRKR------VELELQQAKQEL 580

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
           E           +            ++ E  + +  + ++     +L +I EAT++GIAI
Sbjct: 581 ER--------RVEERTAQLQQSNQKLQHEIAERQQVEIQLR---QKLAAI-EATTEGIAI 628

Query: 468 INREGIILSTNRAVSKLFGYPVED-ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
           +N +G     N A  +LFGY   + +L K +         +     +  IL        E
Sbjct: 629 LNAKGEYTYLNPAHVQLFGYDTSEALLGKSWRHLYPPEEITRFERDIFTILQQQGYWRGE 688

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
            + L     +    + + +        +     DI++ +Q +  L  +++         +
Sbjct: 689 AVALRQNGSKFAEEVSLTLTP---EGNFICICRDITQRQQTEAALRTSEERFRSTFEQVT 745


>gi|307153867|ref|YP_003889251.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306984095|gb|ADN15976.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 1486

 Score =  347 bits (891), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 130/799 (16%), Positives = 294/799 (36%), Gaps = 42/799 (5%)

Query: 36   TEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVF----DPIPRTVRFTWNIDA 91
              ++  E     S E         E+         + +  F         ++ + +++  
Sbjct: 563  AGRASAELERKRSDEALQQLKATLEAQVEERTQQLQESQRFIQQITDQSPSILYLYDL-Q 621

Query: 92   HGYLKEISEELPKTIGNYAFKMIGMR---LCDVSDILHIDPNNHIGDLL-KRQNTWYGKT 147
                  I++E+ + +G    ++  M    +  +     +   N   + L + Q+      
Sbjct: 622  EQRNIYINQEVSRILGYSPTEIQEMGNLIISRLIHPQDLSRFNRYLEQLKQAQDHEILGV 681

Query: 148  TLWPIEGTNLYVPIDLAAL-PIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                 +    +     +    ++SR+ +    +  G+                  ++   
Sbjct: 682  EYRFQDIKGQWRW--FSGRDAVFSRDSQGRVKQVIGVAQDITERKQAEQTLYLQAQQEKL 739

Query: 207  LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
            L EI +        +    +       L   ++V           D  +     ++    
Sbjct: 740  LREINQRIRQSLDLQTIFDTACQEILLLLQVDRVGIFRFDPESHYDDGEFIAEAMVAGLP 799

Query: 267  SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
            S++      H       +       L  +   + E +                 L     
Sbjct: 800  SAIAIHVHDHCFGEKFSSLYAQGKFLAVDDINNSELMDCHREILSQFQIKAHLVLPLLCE 859

Query: 327  DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
            ++      V+   +  +   + + L +  +   + IA   ++L +  +           +
Sbjct: 860  EQLWGLLCVHQCYDTRHWKEAEIKLLQQITHQ-LTIAIQQASLYEQIRQKLRQQQAIAAI 918

Query: 387  YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
             +  R  +     L+TI  +               ++       +      ++  ++   
Sbjct: 919  VQQVRQSLNIEEILNTITQD--------VRALFDCDRVIIFRLYSDGGSRIIEESVSTEF 970

Query: 447  M------EIEVMQLCSILEATSDGIAIINREGIIL--STNRAVSK-LFGYPVEDILRKPF 497
            +        +      IL            +  I+    N   ++ L  Y  E  ++   
Sbjct: 971  LPLKYCHWDDETWSQDILN------LYWQGQPRIVPDVMNDIYTECLHEYSREGQIQSKI 1024

Query: 498  TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT 557
               +  +     NH    + S +  +    + + + +E+++            ++  ++ 
Sbjct: 1025 VAPILLDLKEKENH--RWVASTNSHKLWGILVVHACREKRVWQNSEAQLLQQIANQLAIA 1082

Query: 558  MHDIS--EWKQEKNKLSHAK-KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
            +   S  E  Q + +    K    ++ +  K +FLA +SHE+RTPL AI+G +E ++++ 
Sbjct: 1083 IQQASLFEQLQVEIEDKQQKNAELDRATRLKDEFLANMSHELRTPLNAILGMTEGLQDEI 1142

Query: 615  FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
            FG + N R  +    I+++GN +L+++ND+LD+SKIESG++ LH     +      +++ 
Sbjct: 1143 FGQI-NERQRKSLKIIEQAGNHLLELINDILDVSKIESGQLELHCTSTEIIPLCQSSLAF 1201

Query: 675  VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
            V+  A +KRI +  + ++NI  +  D R ++Q+ +N+L+NA+ FTP GG++ +       
Sbjct: 1202 VKQQAVKKRIQLDFNISSNILMLTLDERRIRQVIINLLNNAVKFTPEGGKVGLEVVQIGE 1261

Query: 735  EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
              V   V+DTG+G+    + K  +PF QI ++   +  GTGLGL L K +VD + G+  +
Sbjct: 1262 NTVRFAVKDTGIGIAAENIPKLFQPFMQIDSALNRQYTGTGLGLALVKRLVDLHGGEVSV 1321

Query: 795  FSTPAKGTLIEIIFPLYDT 813
             S    G+   +  PL ++
Sbjct: 1322 TSELGVGSCFSVDLPLMES 1340



 Score =  111 bits (277), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 57/574 (9%), Positives = 133/574 (23%), Gaps = 74/574 (12%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQNTWY 144
            +  D  GY   ++    +  G  + +  G     V      D  +      ++    + 
Sbjct: 195 IFRTDTQGYCVYVNPRWCEIAGLTSEEAKGKGWEQVLHPDDDDEVSAQWYRSVEENRLFQ 254

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            +       G   Y  +   ++ +   N++  G+ G   +             K   +  
Sbjct: 255 LEYRFKRPNGEIRY--VYGQSVALRDINQQIIGYLG--TITDITEQKKTEYRLKEALRLA 310

Query: 205 SHLHEIKK--GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
              +       +     E+      + P P     +    L     H DD  K       
Sbjct: 311 KLGNWELDVQNNIGYWSEEVFHIFGREPQPFSPSFDGFLEL----VHPDDRSKVVASYTQ 366

Query: 263 TSEESSLPE-QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
             E+    E        +       +   T  +   +    L      +     +     
Sbjct: 367 HLEKRIPHEVVHRVPMPDGRIKVVVERCETAYDAEGKPIHSLGTVQDITEYYKQETILKK 426

Query: 322 T-------------PETVDKCPIPFFV----------YSHGNLFYA-NPSFLLLTKYKSV 357
                            V        V                 +  +            
Sbjct: 427 LLAGTSNTLTQEFFSALVRHIAEALEVSYVIIAELIDERLHTFAFWGDEQLQKNIDVAIC 486

Query: 358 DDIEIAGGLSTLL-------------DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
                                              +   ++L   +   I     L    
Sbjct: 487 QTPCEYVIKDGFFYCSHSIQEQFPQNTHLAQMQAESYLGIVLTDKNSHPIGILCVLDVKP 546

Query: 405 WNRENSLAMTFIPFE--------KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
            +RE +  +  I              +  +   Q      +       ++++     +  
Sbjct: 547 MDRETAEMIQQILQIFAGRASAELERKRSDEALQQLKATLEAQVEERTQQLQESQRFIQQ 606

Query: 457 ILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRK---PFTVFLEQNTPSVMNHY 512
           I + +   + + + +E   +  N+ VS++ GY   +I        +  +     S  N Y
Sbjct: 607 ITDQSPSILYLYDLQEQRNIYINQEVSRILGYSPTEIQEMGNLIISRLIHPQDLSRFNRY 666

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRII-IKKLPFSSC----YSLTMHDISEWKQE 567
           L ++      + L         + +              S            DI+E KQ 
Sbjct: 667 LEQLKQAQDHEILGVEYRFQDIKGQWRWFSGRDAVFSRDSQGRVKQVIGVAQDITERKQA 726

Query: 568 KNKLS---HAKKIAEKESSHKSDFLARVSHEIRT 598
           +  L      +K+  + +      L     +++T
Sbjct: 727 EQTLYLQAQQEKLLREINQRIRQSL-----DLQT 755



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 22/160 (13%), Positives = 55/160 (34%), Gaps = 6/160 (3%)

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
                         +  +RK++   +   S+ E    GI   + +G  +  N    ++ G
Sbjct: 157 QAAILDEINHISSPKQEQRKLQESELNYTSLAEIAPIGIFRTDTQGYCVYVNPRWCEIAG 216

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
              E+   K +   L  +    ++      +  +  +  +          ++  +     
Sbjct: 217 LTSEEAKGKGWEQVLHPDDDDEVSAQWYRSVEEN--RLFQLEYRFKRPNGEIRYVYGQSV 274

Query: 547 KLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKES 582
            L   +     Y  T+ DI+E K+ + +L  A ++A+  +
Sbjct: 275 ALRDINQQIIGYLGTITDITEQKKTEYRLKEALRLAKLGN 314


>gi|51246144|ref|YP_066028.1| two-component system sensory/regulatory protein [Desulfotalea
           psychrophila LSv54]
 gi|50877181|emb|CAG37021.1| related to two-component system sensory/regulatory protein (hybrid
           family) [Desulfotalea psychrophila LSv54]
          Length = 1102

 Score =  347 bits (891), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 101/430 (23%), Positives = 189/430 (43%), Gaps = 32/430 (7%)

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS--ILEATSDGIA 466
           +++A+  +              N +   +++ ++ ++  ++   +L +  I++     I 
Sbjct: 315 SAMAVFIVGIVLTVLLALQFRNNALRTSEIEWQVAEKTAQLRKSELRAEAIIDKAVIPII 374

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
            I+  GI+ S NR+  K+FGY  E+I+ +   + + +   S  N Y+   L     + + 
Sbjct: 375 TIDETGIVQSFNRSAEKMFGYGPEEIIGRNVRMLMPEPHRSSHNKYVDHYLKTGRMKAIG 434

Query: 527 K--ITLGSTKEEKLLSLRIIIKKLPFSSC-YSLTMHDISEWKQEKNKLSHAK-------- 575
                 G  K+     + + + ++      +   + D+SE  + +  L   +        
Sbjct: 435 VGNKLTGVRKDGVEFPMHLSVSEVRLEKRIFVGMVVDLSEINRAEEALRKHRDNLARLVE 494

Query: 576 ----------KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
                     + AE  +  KS FLA +SHEIRTP+ +++GF ++    R   L       
Sbjct: 495 ERTYELKIAKEAAETANIAKSAFLANMSHEIRTPMNSVLGFIQITLESR---LLCAELRR 551

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           +      S   +L I+ND+LD+SK+ESG+  L    + +   V EA+  V+  A EK I 
Sbjct: 552 HLETAYSSAKGLLIIINDILDVSKLESGEFALEATCLDMPRIVQEALKTVESQAEEKGIG 611

Query: 686 IRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE--VILRVR 742
           +   F  ++P     D   + Q+ +N++ NAI FT +G +I I    +   +  +   V 
Sbjct: 612 LDFHFDADLPHCYLGDPTRLGQVIINLVGNAIKFTKTG-KITIGVRASDQGDASLHFSVA 670

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G+GMT  +      PF Q   S      GTGLGL ++K +V+   G+ ++ S   +G 
Sbjct: 671 DRGIGMTAEQAANIFNPFTQADISTARCYGGTGLGLTISKQLVELMGGRIWVESELGRGV 730

Query: 803 LIEII--FPL 810
                   P+
Sbjct: 731 TFHFTAQLPV 740



 Score = 46.9 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 50/157 (31%), Gaps = 12/157 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNT----W 143
           ID  G ++  +    K  G    ++IG  +  +    H   +N  +   LK         
Sbjct: 376 IDETGIVQSFNRSAEKMFGYGPEEIIGRNVRMLMPEPHRSSHNKYVDHYLKTGRMKAIGV 435

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             K T    +G  +  P+ L+   +    R F G      V      N      ++    
Sbjct: 436 GNKLTGVRKDG--VEFPMHLSVSEVRLEKRIFVGM-----VVDLSEINRAEEALRKHRDN 488

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV 240
            + L E +     + KE  +  +         M +++
Sbjct: 489 LARLVEERTYELKIAKEAAETANIAKSAFLANMSHEI 525


>gi|160897314|ref|YP_001562896.1| PAS/PAC sensor signal transduction histidine kinase [Delftia
           acidovorans SPH-1]
 gi|160362898|gb|ABX34511.1| PAS/PAC sensor signal transduction histidine kinase [Delftia
           acidovorans SPH-1]
          Length = 842

 Score =  347 bits (890), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 115/615 (18%), Positives = 222/615 (36%), Gaps = 23/615 (3%)

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
             L    +G              Q   PH    + + +                +PLL  
Sbjct: 227 RPLASTNEGTGVQTAAALQTPLFQEWLPHSEFGSYIGAGMLGRHQIVSFRTVRNWPLLLV 286

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
            E            N   +                    + R   S     ++ +     
Sbjct: 287 VEEPYAAMVARWRDNAFAFFVAGVALLGLVLGLSWSVLKTRRVQKSALQAMEQAQARLAR 346

Query: 325 TVDKCPIPF-----FVYSHGN---LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
           +  +  +        ++   +   L + N  +  LT   S + +     L  ++D   L+
Sbjct: 347 SEHEMAVLMRSVQELIFRTDSQGLLTFVNARWEQLTGQPSAEAVGQP--LENIVDGSYLA 404

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
              A+   +   + R C A        +        +  I      +  + +   G   +
Sbjct: 405 QIQALLDPLARLAPRNCQAM------FRLPGNRE-MLCDIAVVPLLRDGQLVGFAGSAVD 457

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
                  +++++ ++     + E T   + + + +  +   N+A    FG     +L   
Sbjct: 458 VTARWKAQQELQTQLAFQHLLFETTPLPMLVTDADQRVALVNKAWEDFFGRGRYAVLGHE 517

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CY 554
                 ++   +       ++    R  +E          + + +     K         
Sbjct: 518 IKGLHARDDALLQMRSNQVVMRSGQRMMVEARLPHVDGSYRDVQISKAAVKNAQGRITGV 577

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                D+SE++  ++    A+  AE+    KS+F+A +SHE+RTPL +I+GF+E+     
Sbjct: 578 LSIFVDVSEFRAAEHATREARDAAEEAFRVKSEFVANMSHELRTPLQSIMGFAEL---GG 634

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
               GNP   +  N I  +G  +L +VNDLLD++K+ES    +H E   L   +   +  
Sbjct: 635 LRSRGNPAMADMFNDIHEAGIRMLALVNDLLDVAKLESAVGTIHVERTDLRSLIRPVVRE 694

Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
           ++    +K I +R    +      AD    +Q+  N+L+NAI F+P GG+I +       
Sbjct: 695 LEPQQQQKLIDLRLELDDTPLIAKADPVRFQQVVRNVLANAIKFSPIGGRIDVQGRIDEQ 754

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
            ++ + V D G G+   EL+K  +PF Q   ++     GTGLGL + + ++DA  G    
Sbjct: 755 GDICIAVSDQGPGIPPQELDKIFQPFVQSSKTRNGS-GGTGLGLAICRKIIDAMDGTIAA 813

Query: 795 FSTPAKGTLIEIIFP 809
            +    G+L  I  P
Sbjct: 814 SNRSEGGSLFRITLP 828



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/287 (12%), Positives = 82/287 (28%), Gaps = 11/287 (3%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144
             +  D+ G L  ++    +  G  + + +G  L ++ D  ++     + D L R     
Sbjct: 361 LIFRTDSQGLLTFVNARWEQLTGQPSAEAVGQPLENIVDGSYLAQIQALLDPLARLAPRN 420

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR-ALGKRLDKK 203
            +            +  D+A +P+  R+ +  GF G  +    R                
Sbjct: 421 CQAMFRLPGNR--EMLCDIAVVPLL-RDGQLVGFAGSAVDVTARWKAQQELQTQLAFQHL 477

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
                 +    +  ++    +               +    +    +DD L   +   + 
Sbjct: 478 LFETTPLPMLVTDADQRVALVNKAWEDFFGRGRYAVLGHEIKGLHARDDALLQMRSNQVV 537

Query: 264 SEESSLPEQE-DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
                    E     ++ +    +     ++N        LS     S     +      
Sbjct: 538 MRSGQRMMVEARLPHVDGSYRDVQISKAAVKNAQGRITGVLSIFVDVSEFRAAEHATREA 597

Query: 323 PETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
            +  ++       +   + F AN S  L T  +S+      GGL + 
Sbjct: 598 RDAAEEA------FRVKSEFVANMSHELRTPLQSIMGFAELGGLRSR 638


>gi|258514818|ref|YP_003191040.1| multi-sensor hybrid histidine kinase [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257778523|gb|ACV62417.1| multi-sensor hybrid histidine kinase [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 1172

 Score =  347 bits (890), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 110/514 (21%), Positives = 209/514 (40%), Gaps = 39/514 (7%)

Query: 318 GENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
            +N           P  V      +   N + +        + I                
Sbjct: 165 EKNKFHTIFQSMAEPVIVVDAKRRIREINNAAVKCFNLDYKNVIGKP-------CYEIFR 217

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
             + +    L R+ R          +I  N               +   +      +  +
Sbjct: 218 CCHELDECPLKRAMREASQYDNLEISIDINNH-LRKFLVSGSFLEDISGKFAGGVELFID 276

Query: 437 DVDTRINKRKM-------EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK-LFGYP 488
             ++R N+ K+       ++E  +L +++    +G+   +    I+  N      + G  
Sbjct: 277 VTESRENELKLLKARNDADLEAAKLRAMISGMGEGVVFADAGDRIIEVNDFFLNYIAGCS 336

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
             ++L K    F   +    + + +    +      +             L + + ++ +
Sbjct: 337 RSELLGKSIWDFHAGDLLGEVRNLINSFKTKSYSSHVSVTRRIRE-----LEMIMRVQPI 391

Query: 549 PFSSCYSLTM---HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
             +  Y   +    D++E  + + +   AK+ AE  +  KSDFLA +SHEIRTP+  I+G
Sbjct: 392 YSNGLYQGVLLNAIDVTELSRARIEAERAKEQAESANRAKSDFLAVMSHEIRTPMNGILG 451

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
           F+E++ NQ           E    I   G  +LD++N++LD+SKIESGKM L     SL+
Sbjct: 452 FAEILLNQALSS----EQKESVQAISLCGEQLLDLINEILDLSKIESGKMVLEETDFSLE 507

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ 724
             + + I+ V+  A +K + IR +F ++IP+  + D   ++QI  N+L NA+ FT  G  
Sbjct: 508 NIIKDVITTVRQKAQDKGLEIRVNFLDDIPQRFIGDSIRIRQILSNLLFNAVKFTMQGS- 566

Query: 725 IIISTTHTSNEE--------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
           +IIS +    E         + + V DTG+G++  + E     F Q       +  G+GL
Sbjct: 567 VIISVSKRQEECHERDDIFPLQIEVADTGIGISQDKRELIFDAFTQAEGVIAQKFGGSGL 626

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           GL + ++++D   G+ ++ S   +GT+     P+
Sbjct: 627 GLTICRSLLDLMGGEIWVNSNKPQGTIFTFCLPV 660



 Score = 68.5 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 22/161 (13%), Positives = 54/161 (33%), Gaps = 7/161 (4%)

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
                +   R +  E  +  +I ++ ++ + +++ +  I   N A  K F    ++++ K
Sbjct: 151 RVSQLQEVNRILTNEKNKFHTIFQSMAEPVIVVDAKRRIREINNAAVKCFNLDYKNVIGK 210

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555
           P                   +        LE   +       L    +    L   S   
Sbjct: 211 PCYEIFRCCHELDECPLKRAMREASQYDNLE---ISIDINNHLRKFLVSGSFLEDISGKF 267

Query: 556 L----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
                   D++E ++ + KL  A+  A+ E++     ++ +
Sbjct: 268 AGGVELFIDVTESRENELKLLKARNDADLEAAKLRAMISGM 308


>gi|206900464|ref|YP_002250466.1| alkaline phosphatase synthesis sensor protein PhoR [Dictyoglomus
           thermophilum H-6-12]
 gi|206739567|gb|ACI18625.1| alkaline phosphatase synthesis sensor protein PhoR [Dictyoglomus
           thermophilum H-6-12]
          Length = 815

 Score =  347 bits (890), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 93/372 (25%), Positives = 166/372 (44%), Gaps = 32/372 (8%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED--------ILRKPF 497
           ++ +E  ++  ILE   DG+ I++    +   N    ++F    E         +  +  
Sbjct: 339 EVNLEREKMKKILENVGDGLVILDGRKRLSMFNNVAEEIFKLSPEQKEKRCTEVLKCRNL 398

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT 557
           +  L  +   +       +         E       KE  L        +    + + L 
Sbjct: 399 SGELMCSECPLDKMVFQGL----SLMQYEMKVWNGEKEIILGCNLSSTWEGRKVTNFILA 454

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
           + DIS              +A++    KS+F+A VSHE++TPLTAI G+SE++      P
Sbjct: 455 LRDIS--------------LAKELDRMKSEFVANVSHELKTPLTAIKGYSELLIKMNLPP 500

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
               +   Y   I +    +  ++NDLL++S+IESGK+ L  E V + + + E  +  Q 
Sbjct: 501 ---EKVRNYYQIIYKESERLTQLINDLLEVSRIESGKIELKKEMVEIRKVIKERATFFQT 557

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737
             ++    I   F      IL D   + Q+  N+L NAI ++P+GG I +  +    E++
Sbjct: 558 QTSKH--TIVLQFPEYPTFILGDNARLAQVFHNLLDNAIKYSPNGGNIWVRVS-DKMEDI 614

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
           ++ V+D G+G+    L      F ++ +S +    GTGLGL + K++++A+ GK  + S 
Sbjct: 615 VIEVQDQGIGIPPEHLPHIFDRFYRVDSSLRKSTSGTGLGLSIVKSIIEAHGGKISVASK 674

Query: 798 PAKGTLIEIIFP 809
             +GT   I  P
Sbjct: 675 VGEGTTFTIRLP 686


>gi|85715579|ref|ZP_01046559.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A]
 gi|85697518|gb|EAQ35395.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A]
          Length = 611

 Score =  347 bits (890), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 117/389 (30%), Positives = 188/389 (48%), Gaps = 14/389 (3%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           R     + +E  +   +     D I+   R G +   + A   L G PV ++        
Sbjct: 193 RTGASLLNVEEDRYRLLARHMGDVISRHRRNGAVQFISPAAESLLGVPVSELQDHGLFDR 252

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE---------EKLLSLRIIIKKL--- 548
           +           L         Q++E                     + + +  + L   
Sbjct: 253 VHVADRPAYLTTLAAAALGKGAQSVEFRLRREAASDARFEAHLSGDFIWVEMRCQPLESS 312

Query: 549 -PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
            P        M ++++ KQ+++ L  A+  AE+  + K+ FLA +SHE+RTPL AIIGFS
Sbjct: 313 SPAEPEVVAVMREVTDRKQQEHALDLARTAAERADAAKTRFLATMSHELRTPLNAIIGFS 372

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
           E+I  +   PL   R  EYA  I+ SG  +L +VN +LD+SK+ESG   +  EP +  E 
Sbjct: 373 EMIVQEATLPLDATRRKEYAQLINDSGQHLLSVVNSILDMSKMESGSFEILPEPFAPREV 432

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727
           +    +L+ L A +  I + T    N+P+++ D R+ +QI LN++SNAI FT  GG++ I
Sbjct: 433 LLNGCNLLALKARDNGIELVTRVPENLPQMIGDPRAFRQIVLNLVSNAIKFTERGGRVTI 492

Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
           S        ++LRV D GVG+   +L++   PF Q   + Q R EGTGLGL + K +V+ 
Sbjct: 493 SARVE-GARMVLRVMDDGVGIAQEDLKRIGDPFFQAGKTYQRRHEGTGLGLSIVKNLVEL 551

Query: 788 NMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           + G+  + S   +GT + ++ PL  T  P
Sbjct: 552 HRGEIDVQSKVEEGTTVTVMLPLTLTLVP 580


>gi|239905593|ref|YP_002952332.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239795457|dbj|BAH74446.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 1248

 Score =  347 bits (890), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 104/533 (19%), Positives = 203/533 (38%), Gaps = 39/533 (7%)

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYK 355
                         +     E ++      +  P+   ++   G +   N  F+      
Sbjct: 302 VSLMVVALSAIMVRMLNELRESDSRHRIMFENSPLGIVYLKDDGTIINCNDKFVEQMGST 361

Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
               I          +  K S  N  + V    +            +I   + + L + F
Sbjct: 362 KDKIIG--------FNQAKQSGINLQEKVKNALA-GDLSVFEDVYTSITGAKTSFLHIIF 412

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
            P    N             +  D + +++ +  E      +L+     +     E    
Sbjct: 413 NPI---NPGKNPTEVIATIEDITDRKESEQALAREAEDRRILLDTIPTQVWYQPDEYSYG 469

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
             N+A +   G   + +  K  +     +  SV     +E+         E+    ++ E
Sbjct: 470 VVNKAHASFVGIQEDQLAFKKLSEVYPPDVVSVCIQSSSEVFRNGKTIVTEEWVPNASGE 529

Query: 536 EKLLSLRIIIKKLPFSSCYSLTM--HDISEWKQ--------------EKNKLSHAKKIAE 579
            +LL +    KK    +   +     DI+E ++                 +L+ A   A+
Sbjct: 530 ARLLLITKSPKKRENGTVEYIVFAAEDITEQRRSVDSLADYANRMELTNKQLNIALARAD 589

Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639
           + +  K DFLA +SHEIRTP+  +IG + ++ +             +A  I  SG L+L 
Sbjct: 590 EAAKAKGDFLANMSHEIRTPMNGVIGMAGLLLDTSL----TDEQQRFAETIRSSGELLLL 645

Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RIL 698
           +VND+LD SKIE+GK+ L      L + + + +  + + ++ K + +  +   ++P ++ 
Sbjct: 646 LVNDILDFSKIEAGKLELEIVDFDLVQILDDVMDSMAVGSHSKGLELLCATDPSVPYQLQ 705

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELE 754
            D   ++QI  N++ NAI FT  G Q+ +  +  + +E    +   V DTG+G+ + +  
Sbjct: 706 GDPARLRQILSNLVGNAIKFTVQG-QVSVRVSIVNEKESDCILKFSVSDTGIGIQSDKQV 764

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
              + F Q+  S   +  GTGLGL ++K +V+   G   + S   +G      
Sbjct: 765 LIFEQFNQVDASTTRKFGGTGLGLAISKRLVEMMGGTIGVESNLGEGASFWFT 817


>gi|323700495|ref|ZP_08112407.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. ND132]
 gi|323460427|gb|EGB16292.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio desulfuricans
           ND132]
          Length = 1086

 Score =  347 bits (890), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 116/644 (18%), Positives = 230/644 (35%), Gaps = 41/644 (6%)

Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE 245
                    A   R  +    L +       ++  K+ I            + +     E
Sbjct: 330 EIEQRTRAEAQVARSREWMHSLLDHLPLSVYLQTGKHRIAFANEHFRRTLGRCEDGPCHE 389

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
               + +     +   +     +L  +            +   F  +          +  
Sbjct: 390 VIYGRREPCVHCRTREVLESGRALTWETTTRD-GATLLVRNLPFRDMDGTPVVLAAAMDI 448

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAG 364
                +     E ENL    +D  P     +       + + + L LT   +   +    
Sbjct: 449 SGMKRIEVALHESENLYRTLIDNMPDIVMRFDRESRHLFVSRNVLELTGVPASAFLGK-- 506

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
             S  L   +       + +          AA   ++   W   +S    +  F + ++ 
Sbjct: 507 -TSRELGIDEELCRFWDEHIRRVFETGEPQAAEFHMN---WRGRSSH-FDWRLFPERDES 561

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI----AIINREG-----IIL 475
            E      +  +    R  +++          +     DG      I +  G       L
Sbjct: 562 GEVQSVFSLSRDITRQRSLEKE-------YELLFHRMLDGFASHEIICDEAGVPVDYRFL 614

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
             N A  ++      DI+ +             +  Y    L+    + +      + ++
Sbjct: 615 RVNPAFERITDVTAADIVGRTLLEVFPGTERYWIETYGKVALTG---EPIHFEHYAAEQD 671

Query: 536 EKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
            K  ++       P    ++    DI+E       L  AK +AE  S  KS+FLA +SHE
Sbjct: 672 -KFFNVSA---FRPAPGQFACIFSDITERVLTSRALVEAKDLAESASRVKSEFLANMSHE 727

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           IRTPL  I+G  ++++             EYA Y  ++   +  ++ D+LD+S+IE+GK+
Sbjct: 728 IRTPLNGIMGMLQLLRAGDL----TEEQAEYAAYGIKASRRLTRLLTDILDLSRIEAGKL 783

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSN 714
           ++  EPV+L + +S    +  + A  K + +     +++P  +  D   ++Q+ +N++ N
Sbjct: 784 DIREEPVNLRDTLSGLEQMFAVAARSKGLSLVFDLPDDLPDRLFGDDTRIQQVLVNLIGN 843

Query: 715 AIHFTPSGG-QIIISTTHT---SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           AI +T +GG  + ++T          V+  V DTG+G+ + +L    + F Q+ +     
Sbjct: 844 AIKYTETGGVTVEVTTLPRLRPDTVHVLFTVTDTGIGIPDDKLGTVFEHFTQVSSGFTRH 903

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
            +G GLGL + K M+    G   + S P +GT+  +  PL    
Sbjct: 904 YQGAGLGLAITKRMIGLLGGTLAVDSEPGRGTVFGLCVPLRPAD 947



 Score = 94.3 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 40/343 (11%), Positives = 90/343 (26%), Gaps = 30/343 (8%)

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
             P  +  +++         + L        F  +Q N K +             A    
Sbjct: 284 PRPKPSFLQTARQSLVFVLPLALVMAVGGLIFLKIQVNRKTAHLREEIEQRTRAEAQVAR 343

Query: 318 GENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
                   +D  P+  ++ +    + +AN  F            E       +    +  
Sbjct: 344 SREWMHSLLDHLPLSVYLQTGKHRIAFANEHFRRTLGRC-----EDGPCHEVIYGRREPC 398

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
            +   + V          +  A           +L +  +PF   +  P          +
Sbjct: 399 VHCRTREV--------LESGRALTWETTTRDGATLLVRNLPFRDMDGTPV---VLAAAMD 447

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
               +  +  +        ++++   D +   +RE   L  +R V +L G P    L K 
Sbjct: 448 ISGMKRIEVALHESENLYRTLIDNMPDIVMRFDRESRHLFVSRNVLELTGVPASAFLGKT 507

Query: 497 FTVF-LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SC 553
                +++      + ++  +      Q  E       +       R+  ++        
Sbjct: 508 SRELGIDEELCRFWDEHIRRVFETGEPQAAEFHMNWRGRS-SHFDWRLFPERDESGEVQS 566

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
                 DI+  +  + +                 F    SHEI
Sbjct: 567 VFSLSRDITRQRSLEKEY------ELLFHRMLDGF---ASHEI 600



 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/354 (11%), Positives = 90/354 (25%), Gaps = 24/354 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP--NNHIGDLLKRQNTW 143
               D       +S  + +  G  A   +G    ++     +    + HI  + +     
Sbjct: 476 VMRFDRESRHLFVSRNVLELTGVPASAFLGKTSRELGIDEELCRFWDEHIRRVFETGEPQ 535

Query: 144 YGK-TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
             +    W    ++    +     P    + E        +  ++R     R+L K  + 
Sbjct: 536 AAEFHMNWRGRSSHFDWRLF----PERDESGEVQ-----SVFSLSRDITRQRSLEKEYEL 586

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
            F  + +    H  +  E         P  +  ++   +          D++      + 
Sbjct: 587 LFHRMLDGFASHEIICDEAGV------PVDYRFLRVNPAFERITDVTAADIVGRTLLEVF 640

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
              E    E      +       + Y          S    +      + +   E    +
Sbjct: 641 PGTERYWIETYGKVALTGEPIHFEHYAAEQDKFFNVSAFRPAPGQFACIFSDITERVLTS 700

Query: 323 PETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
              V+   +        + F AN S  + T       +    G+  LL A  L++  A  
Sbjct: 701 RALVEAKDLAESASRVKSEFLANMSHEIRTP------LNGIMGMLQLLRAGDLTEEQAEY 754

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
                ++ R        +  +       L +   P    +          +   
Sbjct: 755 AAYGIKASRRLTRLLTDILDLSRIEAGKLDIREEPVNLRDTLSGLEQMFAVAAR 808



 Score = 39.2 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 22/254 (8%), Positives = 55/254 (21%), Gaps = 32/254 (12%)

Query: 94  YLKEISEELPKTIGNYAFKMIGMRLCDV---SDILHIDPNNHIGDLLKRQNTWYGKTTLW 150
               ++    +     A  ++G  L +V   ++   I+    +           G+   +
Sbjct: 612 RFLRVNPAFERITDVTAADIVGRTLLEVFPGTERYWIETYGKVA--------LTGEPIHF 663

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
                      +++A        +F+      I                          +
Sbjct: 664 EHYAAEQDKFFNVSA--FRPAPGQFA-----CIFSDITERVLTSRALVEAKDLAESASRV 716

Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270
           K    +    +                     +      +   L  E+         +  
Sbjct: 717 KSEFLANMSHEIRTPLN-------------GIMGMLQLLRAGDLTEEQAEYAAYGIKASR 763

Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330
                 T  L+    +     ++       + LS        A   +G +L  +  D  P
Sbjct: 764 RLTRLLTDILDLSRIEAGKLDIREEPVNLRDTLSGLEQMFAVAARSKGLSLVFDLPDDLP 823

Query: 331 IPFFVYSHGNLFYA 344
              F      +   
Sbjct: 824 DRLFGDDT-RIQQV 836


>gi|239827569|ref|YP_002950193.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus
           sp. WCH70]
 gi|239807862|gb|ACS24927.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus
           sp. WCH70]
          Length = 597

 Score =  347 bits (890), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 94/373 (25%), Positives = 161/373 (43%), Gaps = 28/373 (7%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            +  E  QL SIL + +DG+   NR+G IL TN    +          +      +    
Sbjct: 252 ALNQEKEQLASILSSMADGVITFNRDGEILITNPPAERFLQ--AWYFEQGNGAETMAP-L 308

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
           P  +      ++  +  Q++E    G T     + L   +            + D++E +
Sbjct: 309 PPQVKELFIRVVREEKEQSIELSLQGRT----WVILMTPLYSKTTVRGAVAVLRDMTEER 364

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           +                  + DF+A VSHE+RTP+  + G+SE I +       +    E
Sbjct: 365 RL--------------DKLRKDFVANVSHELRTPIAMLQGYSEAIIDDI--AATDEEKKE 408

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
            A  I      +  +VNDLLD++++E+G + L +E V L   +   I   Q  A EK+I 
Sbjct: 409 MAKVIYDESLRIGRLVNDLLDLARMEAGHITLDYETVQLVPYIERIIRKFQGLAKEKQID 468

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +   F N   +I  D   ++Q+  N++ NAI  T   G + I    + +  V + V+D+G
Sbjct: 469 LSAEFKNEDIQITMDPDRIEQVLTNLIDNAIRHTDKNGMVKIIVERSGDG-VTIHVQDSG 527

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
            G+   +L    + F +   ++     GTGLGL +AK +V+A+ G   + S   +GT   
Sbjct: 528 SGIPEEDLPFVFERFYKADKARTRGRSGTGLGLAIAKNIVEAHKGTISVHSKLHEGTTFT 587

Query: 806 IIFPLYDTSHPHD 818
              P    + PH+
Sbjct: 588 FYLP----NGPHE 596


>gi|330975736|gb|EGH75802.1| PAS protein [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 576

 Score =  347 bits (890), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 116/520 (22%), Positives = 205/520 (39%), Gaps = 46/520 (8%)

Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS-----TLLDAPKLSDNNAIKPVM-- 385
                HG +   N     +  Y S D ++            L+       +    P+   
Sbjct: 48  IATDEHGVIQIFNVGAERMLGYHSEDVVDKITPADISDPAELIIRAAALSHELNTPITPG 107

Query: 386 ---LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
              L       I     L  I+ +     AM        +     +    I  ++   + 
Sbjct: 108 FEALVFKASRGIEDIYELTYIRKDGSRLSAM-VSVTSLRDSAETIIGYLLIGTDNTARKQ 166

Query: 443 NK-------RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
            +       +++  +     S++E+  D + + + +GII   N+ +  L G   ++++  
Sbjct: 167 EEEAQALLDQRLRDQQFYTRSLIESNIDALMMTDPQGIISDVNKQMMALTGRTRDELIGA 226

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--C 553
           P   F     P+  +  +  +LS       E         E ++S               
Sbjct: 227 PCKNFF--TDPASADAAIKRVLSEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRKLKG 284

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
                 D++E K+ +  L       E  S  KS+FLA +SHE+RTPL A+IGFSE +++ 
Sbjct: 285 VFAAARDVTERKRFERTLEEKNIELEHASHMKSEFLATMSHELRTPLNAVIGFSEALRDG 344

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
             G + +     Y   I  SG  +L ++ND+LD+SK+E+G M L  E V LDE +S ++ 
Sbjct: 345 MVGDMTDA-QRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELESVDLDELLSNSLL 403

Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
           +V+  A  + I ++         +  D R  KQI  N+L+NA+ F+  GG + ++     
Sbjct: 404 IVREQAALQHIQLKLETEAEFGELELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRLVP 463

Query: 734 -----------------------NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
                                   + + L V DTG+G+   ++ K  K F QI +    +
Sbjct: 464 ASQAGLIDGDWPAYGFALPSGNCEQFLELSVSDTGIGIAQSDMNKLFKAFSQIDSGLARK 523

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            EGTGLGL + K + + + G   + S    G    +  P+
Sbjct: 524 FEGTGLGLAMVKQLTELHGGCVAVASVKDLGARFVVWLPI 563



 Score = 51.2 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 53/161 (32%), Gaps = 19/161 (11%)

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
           +       + V+TR  K  ++   +Q  +I  +        +  G+I   N    ++ GY
Sbjct: 11  VDAQSRAEKIVETRRQKILLKTGALQ-DAIFNSAYFSSIATDEHGVIQIFNVGAERMLGY 69

Query: 488 PVEDILRK-PFTVFLEQNTPSVMNHYLTEILSLDLRQTLE-------------KITLGST 533
             ED++ K       +     +    L+  L+  +    E                    
Sbjct: 70  HSEDVVDKITPADISDPAELIIRAAALSHELNTPITPGFEALVFKASRGIEDIYELTYIR 129

Query: 534 KEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNK 570
           K+   LS  + +  L  S+     Y L   D +  KQE+  
Sbjct: 130 KDGSRLSAMVSVTSLRDSAETIIGYLLIGTDNTARKQEEEA 170



 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/238 (11%), Positives = 66/238 (27%), Gaps = 10/238 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            D  G + ++++++    G    ++IG    +         +  I  +L        + T
Sbjct: 199 TDPQGIISDVNKQMMALTGRTRDELIGAPCKNFFTDP-ASADAAIKRVLSEHKVSDYELT 257

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           +   +GT     +   A   + R+R+  G   F                +  + +  H  
Sbjct: 258 VRAYDGTETV--VSYNAATFHDRDRKLKGV--FAAARDVTERKRFERTLEEKNIELEHAS 313

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK-VSSLTEYYAHKDDVLKTEKYPLLTSEES 267
            +K    +    +              +++  V  +T+        +      LL+    
Sbjct: 314 HMKSEFLATMSHELRTPLNAVIGFSEALRDGMVGDMTDAQRRYIGDIFNSGQHLLS---- 369

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
            + +  D   +     T +     L      S   +  +          E E    E 
Sbjct: 370 LINDILDLSKVEAGMMTLELESVDLDELLSNSLLIVREQAALQHIQLKLETEAEFGEL 427



 Score = 45.0 bits (105), Expect = 0.057,   Method: Composition-based stats.
 Identities = 27/270 (10%), Positives = 70/270 (25%), Gaps = 36/270 (13%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGM-RLCDVSDILHI------------DPNNHIGD 135
            D HG ++  +    + +G ++  ++      D+SD   +             P     +
Sbjct: 50  TDEHGVIQIFNVGAERMLGYHSEDVVDKITPADISDPAELIIRAAALSHELNTPITPGFE 109

Query: 136 LL----KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN 191
            L     R      + T    +G+   +   ++   +        G+   G    N    
Sbjct: 110 ALVFKASRGIEDIYELTYIRKDGS--RLSAMVSVTSLRDSAETIIGYLLIGT--DNTARK 165

Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL------------RMKNK 239
                   LD++   L + +    S+ +   D      P   +            R +++
Sbjct: 166 QEEEAQALLDQR---LRDQQFYTRSLIESNIDALMMTDPQGIISDVNKQMMALTGRTRDE 222

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
           +          D          + SE      +      +  +        T  +  ++ 
Sbjct: 223 LIGAPCKNFFTDPASADAAIKRVLSEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRKL 282

Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
               +     +    F+         ++  
Sbjct: 283 KGVFAAARDVTERKRFERTLEEKNIELEHA 312


>gi|262402984|ref|ZP_06079544.1| hypothetical protein VOA_000965 [Vibrio sp. RC586]
 gi|262350483|gb|EEY99616.1| hypothetical protein VOA_000965 [Vibrio sp. RC586]
          Length = 1586

 Score =  347 bits (890), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 116/510 (22%), Positives = 199/510 (39%), Gaps = 34/510 (6%)

Query: 330  PIPFFVYSHGNLFYANPSF--LLLTKYKSVDDIEIAGGLSTLL--DAPKLSDNNAIKPVM 385
            P   F + HG+ F    +F             + I G         A  L D    +  +
Sbjct: 586  PESTFAFEHGHSFRWQDAFKEADFLSLDVAGVLSIKGWRGNFWEKQAKLLLDAGLDQRFI 645

Query: 386  LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
               + +  +    R+ T        L +  I                +            
Sbjct: 646  TIHNAQPQLPVLMRIAT------QILIVIAIMMVFVLMSVSIQYWLWLTSMVKQREEWNL 699

Query: 446  KMEIEVM----QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
            +++ +      +  ++LE++ +   I++  GII   N    K+FGY  +++   P     
Sbjct: 700  QLQNQKEKEVLRFKALLESSPEATLIVDTSGIIKMVNEEAEKVFGYGRDELEGYPMHRLF 759

Query: 502  EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS--LTMH 559
              +  S    +          Q +E   +    +E    + I    +         +++ 
Sbjct: 760  LHDLESARAKHARWYELRPGNQRIE---IAVRSDETEFPVEISSSSVQMDDGLLISVSIR 816

Query: 560  DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
            +I++    +  L  A   AE+ +  KS FLA  SHEIRTPL AI+G + ++ ++      
Sbjct: 817  NITDRLAFEQTLKKALHDAEQATQAKSVFLANTSHEIRTPLNAILGLTHLLSDESL---- 872

Query: 620  NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
                    + I  SG  +L IVND+LD+SKIE+ +M L   P+ L E + E  S+    A
Sbjct: 873  TESQHRLVDKIGISGKSLLGIVNDVLDLSKIEANEMILEALPLDLKEFLEEVASVFSTQA 932

Query: 680  NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN---- 734
              K +  +     ++P  ++AD   ++QI  N+LSNA+ FT  G  I +           
Sbjct: 933  EAKNLDFKLEMGADLPHWVIADSMRLRQILTNLLSNALKFTSVG-HIALRVEVIDKFSWN 991

Query: 735  ----EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
                  V   + DTG+G++    ++  KPF Q   S   R  GTGLGL +   ++    G
Sbjct: 992  GAEKNIVRFSITDTGIGISEEAQKRLFKPFSQADTSTSRRFGGTGLGLSIVHKLLGLMEG 1051

Query: 791  KFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820
            K  + S+  +G+      PL   S   D I
Sbjct: 1052 KIGVESSEGQGSTFWAEMPLQTLSD-EDII 1080



 Score = 41.6 bits (96), Expect = 0.61,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 41/141 (29%), Gaps = 2/141 (1%)

Query: 169 YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228
               REF G  GFG +   RV     A      ++    +   +  +  + +++ I    
Sbjct: 93  RDIEREFPGALGFGFIR--RVPVAQEADFVAAARRDDFPNFTIRTLTPHDGDRFIIQYIY 150

Query: 229 SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288
              P+L+                     E+ P LT+  + +          L        
Sbjct: 151 PEKPNLQAIGLDIGSETNRRKAALASVREQQPYLTAPITLVQADSKPRRGVLILLPVYPS 210

Query: 289 FGTLQNNSKESFEYLSHRNHP 309
              L+  ++    +L     P
Sbjct: 211 RMELKTPAEREKYFLGWAYAP 231


>gi|326391595|ref|ZP_08213125.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325992377|gb|EGD50839.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 456

 Score =  347 bits (890), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 85/370 (22%), Positives = 173/370 (46%), Gaps = 24/370 (6%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +    ++     +L +IL++  +G+   +    IL  N A  K+     +D++ +     
Sbjct: 101 KETIEELNDRNAKLEAILKSIVNGVIAFDDNEKILLINDAARKILNIKEKDLIGRHILEV 160

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-CYSLTMH 559
           +     S ++    ++       +         K  K+ +   I+  +   +  + L + 
Sbjct: 161 VR---NSKLHDLFEDVKKNKNSSSRSLELNVFNKHLKVYT-SPILHPISHQNLGFVLIID 216

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           DI+E ++ +                +S+F+A VSHE+RTPLT+I GF E +   R G + 
Sbjct: 217 DITEMRRLE--------------KIRSEFVANVSHELRTPLTSIRGFIETL---RNGAID 259

Query: 620 NPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
           NP+  + + + ID     +  ++ND+L +S+IE+ K     E + LD  + + + ++   
Sbjct: 260 NPQTRDKFLDIIDFESERLTRLINDILTLSEIENVKEGYPTEEIELDNEIEDILYIMDKV 319

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738
           A  K I ++         I  +     Q+ +N++ N I +TP GG + +ST     +++I
Sbjct: 320 ARNKNITLKKDLNCTDLVINTNKDRFHQMMINLIDNGIKYTPEGGFVKVSTR-EEGDKII 378

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           + V D G+G++   + +  + F ++  S+  +  GTGLGL + K +V++  G+ ++ S  
Sbjct: 379 IEVEDNGIGISKENIPRLFERFYRVDKSRSRKLGGTGLGLAIVKHIVESMKGEIFVESEV 438

Query: 799 AKGTLIEIIF 808
            +GT   I F
Sbjct: 439 GRGTKFIIKF 448


>gi|307824939|ref|ZP_07655161.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
            SV96]
 gi|307733986|gb|EFO04841.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
            SV96]
          Length = 2035

 Score =  347 bits (890), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 118/780 (15%), Positives = 257/780 (32%), Gaps = 62/780 (7%)

Query: 87   WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS---DILHIDP-NNHIGDLLKRQNT 142
            W +D    +   S+E+ +       +  G                       + LK +  
Sbjct: 1029 WEMDHVDNVLSWSDEIFRIF-EVDPEQFGATYEAFLNAVHPYDRAAVERAYTESLKSREP 1087

Query: 143  WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
            +  +  L   +G   Y  +       Y+ + +       G V          A       
Sbjct: 1088 YEIEHRLLMADGRVKY--VLERCETAYADDGKP--LNSLGTVQDITERKRMEAELISQTD 1143

Query: 203  ----KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH-----KDDV 253
                  + + +       +E+ +      +         ++        A        D 
Sbjct: 1144 FQQTILNAVADAGMQVMMIEEGRIIHVGNRKLAYEFGFTDEDIDTHPALADIIHPDDRDR 1203

Query: 254  LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ--NNSKESFEYLSHRNHPSL 311
            +       +  E  S   +    T N  +   +     +   +  +             +
Sbjct: 1204 IIDYHVRRMAGEAVSASYELGLVTRNGERREYETSVAIVPGTDPVRVITVGKDISERKRM 1263

Query: 312  SAYFDEGENLTPETVDKC----PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
                    +     ++           + +   + + N        +   D       + 
Sbjct: 1264 ETELLSQADFQKTIINAVCDVGMQLIVIENGRMIHFGNQLLARKFGFTDEDIDGYPSFID 1323

Query: 368  TLLDAPKLS------------DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
             +    +                     + L   +         +  +       L   F
Sbjct: 1324 FVHPDDRARVIGYHVSRMKGEAAPNNYELGLVAGNGERREYETSVAVVPDTDPVRLIAIF 1383

Query: 416  IPFEKANQFPENMP----QNGIEPEDVDTRINKR--KMEIEVMQLCSILEATSDGIAIIN 469
                +  +  E +     +       ++ R+ +R  ++  +   L ++++       + +
Sbjct: 1384 RDITERKRMEEALANREQELCALNASLELRVLERTEELRQQTRYLRTMIDTLPMFAWLKD 1443

Query: 470  REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
             +   L  N+A++    + V++++ K       +           E+++   R+ +E+  
Sbjct: 1444 TDSRFLVVNQALAAACSHNVDELVGKSDLDVWPREHAETYRADDAEVMATGQRKAVEEPF 1503

Query: 530  LGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
            + +      +                      DISE K  +     A   AE+ +  +S+
Sbjct: 1504 VDARDGAIWVETFKAPVVDEDGRVLGTVGVSRDISERKAVEAAREAALVEAERLARLRSE 1563

Query: 588  FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
            F+AR+SHE+RTPL  I+G+S+++  +      N R     N + +SG  +L ++ND+LD 
Sbjct: 1564 FMARMSHELRTPLNGILGYSQILLGENR---LNERQHVMVNVMQQSGEHLLSLINDILDF 1620

Query: 648  SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQ 706
            +KIE+GK  L    + L   +     +V + A +K++      A  +P  I AD   +KQ
Sbjct: 1621 AKIEAGKQELSLSDIHLPSFLHNLADIVSVKAEQKQLAFICDIAAAVPEGIRADDMRLKQ 1680

Query: 707  IALNILSNAIHFTPSGGQIIIST----------THTSNEEVILRVRDTGVGMTNYELEKA 756
            + LN+LSNA+ ++  G QI +                   +   ++D+G+G+   +LE  
Sbjct: 1681 VLLNLLSNAVKYSEQG-QISLRVTVLKKPFSEGAPVELGRLRFEIQDSGIGIEAGQLESI 1739

Query: 757  MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF--PLYDTS 814
             KPF Q     Q  G GTGLGL +++ +V     + ++ S   +G+        P+ D +
Sbjct: 1740 FKPFEQA-ADIQYSGGGTGLGLVISRELVRLMGSEIFVSSRVGEGSTFWFDLDAPVVDVN 1798



 Score =  134 bits (338), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 51/508 (10%), Positives = 138/508 (27%), Gaps = 27/508 (5%)

Query: 88   NIDAHGYLKEISEELPKTIGNYAF---KMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTW 143
              D  G +K ++ +L   +G         IG +  ++      D     I  +++     
Sbjct: 530  RYDRDGRIKYMNSQLHAALGLDEATARAAIGKKSTELYPDGDFDAYEQTIKSVIESGQ-V 588

Query: 144  YGKTTLWPIEGTNLY-VPIDLAALPIYSRNREFSGFRGFG-IVHVNRVDNDPRALGKRLD 201
                 + P  G  +    + + A        E  G    G  +   R     +     + 
Sbjct: 589  SELEVVLPDTGDGIRYHWVRMVAE--REPFGEVIGVLALGRDITETRALQQRQTQYFAMA 646

Query: 202  KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
                   E +           D   +        +   + +L       D  +   K   
Sbjct: 647  PGLFSTIEHRADGCYAMPFVSDGVRELFGLEPEEVMRDIGTLVARAHPDDIEMTFRKTEE 706

Query: 262  LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
               + +    +      +      +      Q        ++   +  +     +     
Sbjct: 707  SERDLTPFHVEYRIIHPSNGLRWIEC-NSMPQRLPDGGTRWMGFYHDVTERKAIENALQD 765

Query: 322  TPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEI----AGGLSTLLDAPKLSD 377
            + + + +      V S   +   N   +   +   + +I+     A  ++ L        
Sbjct: 766  SEQMLQEAQRIAHVGSWD-VDMVNDKLVWSDEIFRIWEIDKTKFKADFVAFLETVHPEDR 824

Query: 378  NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
            +   +       +R+        H + +       +      + +   + +   G   + 
Sbjct: 825  DRVSQAYNEAVINRSLYEVE---HRLLFPDGRVKHVLERGEPQYDAQGKPVRFIGTSLDI 881

Query: 438  VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
             + +  ++++      L   L+   D + +   +      N+      GY  +++L    
Sbjct: 882  TERKAIEKQL----ALLNYALDHVKDTVLLTGEDAHFYYVNKEACTTLGYSYDEMLGLGV 937

Query: 498  TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP-FSSCY-S 555
                          +  ++ +     +L   +   TK+ ++  + I           Y  
Sbjct: 938  PNIDPVYQQDHWPDHWRDLKANG---SLTFESRHRTKDGRIFPVEINANYFEFDGQGYNL 994

Query: 556  LTMHDISEWKQEKNKLSHAKKIAEKESS 583
                DISE KQ ++ L   ++I  +   
Sbjct: 995  ALARDISERKQMEDALRKNRQILTEAQR 1022



 Score = 78.9 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 49/427 (11%), Positives = 117/427 (27%), Gaps = 43/427 (10%)

Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL-------------RMKNKV 240
               ++ + +   L  I  G +    +     + + P P               +   + 
Sbjct: 221 EQSLQQGEGQPPELSVIDPGIAGSASDPSLFATNRPPSPFAVVVFQKRVDQDFLQAVERK 280

Query: 241 SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF 300
           + +       D     +  PL  S +  LP      +  +   T     G+    +    
Sbjct: 281 TGMWPLLFSPDGQHSRQMGPLNLSLQELLP-DLAKASAGIKAKTVSTGQGSFYAAALPWQ 339

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDK----------CPIPFFVYSHGN----LFYANP 346
                    +L A  D       +TV              I   ++  G     +     
Sbjct: 340 FEQQPGFVLALVASQDSTLQNIRQTVAAILTVTSLILALSIGIGIFWVGRFIDPIIALTN 399

Query: 347 SFLLLTKYKSVD-----DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401
           +   +     ++     D  +       L      +   +             +  +   
Sbjct: 400 AVKAIGLVSRLERDRQSDYRLTAENLRPLAIQAPGEIGDLAWAFDVMIGELHHSFDSLEQ 459

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGI-----EPEDVDTRINKRKMEIEVMQLCS 456
            ++       A+  +  E+  Q  E   + G        E  + ++ +  + +   +  S
Sbjct: 460 RVEERTAELRALHQVLEEQNLQLEEQSFELGASNSSLLEEIGERKLIEDLLRLREQEFRS 519

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPV---EDILRKPFTVFLEQNTPSVMNHYL 513
           + E + D IA  +R+G I   N  +    G         + K  T              +
Sbjct: 520 LAENSPDNIARYDRDGRIKYMNSQLHAALGLDEATARAAIGKKSTELYPDGDFDAYEQTI 579

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKL 571
             ++       LE +   +    +   +R++ ++ PF           DI+E +  + + 
Sbjct: 580 KSVIESGQVSELEVVLPDTGDGIRYHWVRMVAEREPFGEVIGVLALGRDITETRALQQRQ 639

Query: 572 SHAKKIA 578
           +    +A
Sbjct: 640 TQYFAMA 646



 Score = 70.8 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/193 (9%), Positives = 56/193 (29%), Gaps = 7/193 (3%)

Query: 36   TEKSKKENPCHDSFEQ--SNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHG 93
            TE+ + E    +  ++  +         +  T  L  +  ++   I     F W  D   
Sbjct: 1387 TERKRMEEALANREQELCALNASLELRVLERTEELRQQTRYLRTMIDTLPMFAWLKDTDS 1446

Query: 94   YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTWYGKTTLWPI 152
                +++ L     +   +++G    DV    H +       +++        +     +
Sbjct: 1447 RFLVVNQALAAACSHNVDELVGKSDLDVWPREHAETYRADDAEVMATGQRKAVEEPF--V 1504

Query: 153  EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212
            +  +  + ++    P+   +    G    G+           A  +    +   L  ++ 
Sbjct: 1505 DARDGAIWVETFKAPVVDEDGRVLGT--VGVSRDISERKAVEAAREAALVEAERLARLRS 1562

Query: 213  GHSSVEKEKYDIF 225
               +    +    
Sbjct: 1563 EFMARMSHELRTP 1575


>gi|262274843|ref|ZP_06052654.1| signal transduction histidine kinase [Grimontia hollisae CIP
           101886]
 gi|262221406|gb|EEY72720.1| signal transduction histidine kinase [Grimontia hollisae CIP
           101886]
          Length = 808

 Score =  347 bits (890), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 100/431 (23%), Positives = 189/431 (43%), Gaps = 20/431 (4%)

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
            V++ R     +A        +    +    T    ++     +   Q   E   ++ + 
Sbjct: 257 AVVITRRLGNKMAWPIVALAREVKEGHYPINTLQADKEIATLADAFNQATQEINRINEQN 316

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            K +      Q+ +I++   D I  I+  G I + N A   LFGY   +++ +   + + 
Sbjct: 317 IKEERLSGQSQVQAIVDTVVDSIITIDAHGYIATFNPAAEGLFGYRATEVIGQKINILMP 376

Query: 503 QNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLS--LRIIIKKLPFSSCYSLTM 558
               S  + YL   ++    + +   +  +G  K+  +    L +   ++  +  ++  +
Sbjct: 377 PPFASEHDSYLENFMNGKQAKIIGIGREVVGMRKDGSIFPAELSVSEMRVSGNPMFTGII 436

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            DI+  K+++              + K++F+A VSHE+RTPLT+I G   +I  +  G L
Sbjct: 437 RDITSRKKDE--------------AMKNEFVATVSHELRTPLTSIRGALGIILGKFSGEL 482

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
            +           R+   +  ++ND+LDI K+ESG M  HF   +L   ++ +I     Y
Sbjct: 483 PDKTQK-MLTLALRNCERLTLLINDILDIEKLESGAMLYHFNRCNLYSIIARSIEDNTGY 541

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738
           A   +I +          I AD   ++Q+  N+LSNAI ++ SGG++ ++    +     
Sbjct: 542 AKHHQITVTFESDTETAYINADSTRMQQVMANLLSNAIKYSKSGGEVNVTLE-NNGSSFR 600

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           + + D G G+     E     F Q  +S   R  GTGLGL +AK++++A+ G+ + FS P
Sbjct: 601 VEITDHGAGIPPEFHEHLFTRFSQADSSDTRRVGGTGLGLAIAKSIIEAHKGQLHFFSVP 660

Query: 799 AKGTLIEIIFP 809
            +G       P
Sbjct: 661 KQGATFFFTVP 671



 Score = 46.9 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 26/180 (14%), Positives = 56/180 (31%), Gaps = 16/180 (8%)

Query: 25  LSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLD---SENTFVFDPIPR 81
           L+++  +  +     + +       +  N   Q    ++  N  +   S  + V   +  
Sbjct: 275 LAREVKEGHYPINTLQADKEIATLADAFNQATQEINRINEQNIKEERLSGQSQVQAIVDT 334

Query: 82  TVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN 141
            V     IDAHGY+   +       G  A ++IG ++  +        ++   +      
Sbjct: 335 VVDSIITIDAHGYIATFNPAAEGLFGYRATEVIGQKINILMPPPFASEHDSYLENFMNGK 394

Query: 142 TWY-----GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF-GIVHVNRVDNDPRA 195
                    +      +G+    P +L+   +       SG   F GI+          A
Sbjct: 395 QAKIIGIGREVVGMRKDGSIF--PAELSVSEMR-----VSGNPMFTGIIRDITSRKKDEA 447


>gi|295688681|ref|YP_003592374.1| PAS/PAC sensor signal transduction histidine kinase [Caulobacter
           segnis ATCC 21756]
 gi|295430584|gb|ADG09756.1| PAS/PAC sensor signal transduction histidine kinase [Caulobacter
           segnis ATCC 21756]
          Length = 843

 Score =  347 bits (890), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 136/664 (20%), Positives = 245/664 (36%), Gaps = 55/664 (8%)

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY 246
            R+  +P                + +G  +             P    R  + +      
Sbjct: 191 ARLIEEPARGESSALALPDGTLIVAQGGRAQGATAVRQAFALKPADLRRPADDLRG---- 246

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
              +    K     +    E +L       +              L   +      L   
Sbjct: 247 ---RASDGKPLDVAVKPVGEGALTAVFAAPSSGDGGVPTSSALSLLIPLAAGIGLALLLV 303

Query: 307 NHPSLSAYFDEG----ENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEI 362
                S          E      V+      + +              +T          
Sbjct: 304 VQSRKSEAAQREFIDSEQRFRLAVEAARCGIWEWDLNADEVF---LSDVTGAMFGWGGGG 360

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
                 LLD         ++  +   +       S R+  +   + +             
Sbjct: 361 VVSGQDLLDRIAPDHRERLRKALANAALYGAFDVSFRVPAVGQGQRSLWIDARGQGFGRA 420

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
                    G+  +  + R+ + + +    +L   +E+ S+   + +R G +L  NR   
Sbjct: 421 DADGYSRIIGVALDVTEERVAQARAQAAENRLRDAIESVSEAFVLWDRHGRLLMCNRNYR 480

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
            +F    + +  KP     E N  + +            +   E   +    + + + + 
Sbjct: 481 NVFSLDPKLL--KPGAARAEINRRAALAIKQDHSAPDAAKGVREAELM----DGRWIQIS 534

Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE--------------------- 581
              ++        +T  DI+  K +       ++  +                       
Sbjct: 535 ---ERRTAEGGLVMTAADITAIKNQDEARRLNQEQLQNAVAGLERSQEQLAELARKYETE 591

Query: 582 -------SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
                  +  KS+FLA +SHE+RTPL AI GFSE++ N+ FGPLG+ RY  Y+  I  SG
Sbjct: 592 KVRAEGANRAKSEFLANMSHELRTPLNAINGFSEIMMNEMFGPLGDERYKGYSQDIHSSG 651

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
             +L ++ND+LD+SKIE+GKMNL FEP+ +++   +A+ LV+  A    + +R  F   +
Sbjct: 652 QHLLALINDILDMSKIEAGKMNLKFEPMHVEDVAEDAVRLVRNRAEAAGLNLRIDFPP-L 710

Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN---EEVILRVRDTGVGMTNY 751
           P I AD R++KQ+ LN+LSNAI FTP  G + ++     +   + V + V DTG+G+   
Sbjct: 711 PEIEADYRAIKQVLLNLLSNAIKFTPRAGSVTLTAEVRRDAFGDMVRVSVADTGIGIAKE 770

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
           +L +  +PF Q+ +      +GTGLGL L K+++  + G   + STP +GT +    P+ 
Sbjct: 771 DLARLARPFEQVESQFSKTTQGTGLGLALTKSLISMHDGALEMTSTPGEGTTVSFALPIR 830

Query: 812 DTSH 815
            + H
Sbjct: 831 QSEH 834


>gi|240139110|ref|YP_002963585.1| putative histidine kinase with HK Homodimeric domain, ATPase domain
           and a sensory PAS domain [Methylobacterium extorquens
           AM1]
 gi|240009082|gb|ACS40308.1| putative histidine kinase with HK Homodimeric domain, ATPase domain
           and a sensory PAS domain [Methylobacterium extorquens
           AM1]
          Length = 843

 Score =  347 bits (890), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 175/783 (22%), Positives = 306/783 (39%), Gaps = 81/783 (10%)

Query: 34  FETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHG 93
           F++  +K + P  DS       + +  S   +   + E           +R  W  DA G
Sbjct: 137 FDSGPAKADPPPADSGPDVAKPEASFPSPVPSPVPEVETA------ELPLRVIWRSDADG 190

Query: 94  YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIE 153
            L  +S   P      A  + G     ++    I+    + + L  + T+     L  + 
Sbjct: 191 VLTHVSRTHPDL----AEALSGRSWAMLAADGVIEGA-ALTEALAGRRTFRTLPLL--VR 243

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
           G      ++++  P      +FSGF GF I+                         + + 
Sbjct: 244 GRAYEHALEISGAPAGRSTDDFSGFGGFAIL-------------------GERRARVMES 284

Query: 214 HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE 273
               E++  +   +++P      ++ +S        +   +   ++      + + P   
Sbjct: 285 AVEDEEDGLENLQEEAPVDETEAESGLSVNEHAAFREVARVLGLRFAPDEDGDDAAPPPA 344

Query: 274 DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF 333
              +                                 LS           E ++  P+  
Sbjct: 345 RPESAP------------------SGSVMPFPIPQGRLSEAETRARLALTELLESLPLGV 386

Query: 334 FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393
            VY    + +A+ +FL LT Y  +  +  A GL+ L       D   I PV   R +   
Sbjct: 387 LVYRGSEMLFASRTFLDLTGYADLPALRQA-GLAHLFRGLPPRDREIIGPVPFARPEGGT 445

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
           +A       + W    +          A                        ++     +
Sbjct: 446 VALLVDRAGLVWEGAQAEICLARAMPAAGDI---------------------QLPANAAR 484

Query: 454 LCS--ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
           L +  +L++  DG+  ++ EG ++  N + ++L     ++++   F       + S +  
Sbjct: 485 LRAEKVLDSLEDGVVTLDAEGRVVGLNPSAAELVHAHPKEVVGGRFADLFASESLSALET 544

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK---QEK 568
            +T+       +               L LRI       +  Y  ++ +I +        
Sbjct: 545 AVTDSRRSGTSKVHGVTVRTGAA---ALRLRIARLLGEDAPGYCASLREIRDEDVAPPAP 601

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
                 +   E E   K++ LARVS EIR  L AI+G ++++ + RF      R   Y  
Sbjct: 602 VAEPVRRSEPEAEGVWKANALARVSREIRPSLNAILGLTDMMLSDRFDRADAERLEAYLR 661

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            +  SG  +  +++DLLD+++I++G+  L F  ++L+E V+  I+  Q  A   RI++RT
Sbjct: 662 EVRLSGGRIAALIDDLLDLAEIQAGRGKLTFADLALNELVASCIAAQQPQAARDRIVLRT 721

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748
           S A N+P + AD RS++Q AL +L NAI  T +GGQ+I+STT     EV LRVRDTG GM
Sbjct: 722 SLAPNLPAMKADERSIRQAALTVLGNAIRVTEAGGQVIVSTTLAEQGEVALRVRDTGTGM 781

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           T  EL  A++PFG         G+  G GL L KA+V+AN G+F I S   +GTL+E++F
Sbjct: 782 TEDELMSALEPFG-ADLGAVPEGDEKGFGLTLTKALVEANRGRFRISSRKDEGTLVEMLF 840

Query: 809 PLY 811
           P  
Sbjct: 841 PAA 843


>gi|295687501|ref|YP_003591194.1| PAS/PAC sensor hybrid histidine kinase [Caulobacter segnis ATCC
           21756]
 gi|295429404|gb|ADG08576.1| PAS/PAC sensor hybrid histidine kinase [Caulobacter segnis ATCC
           21756]
          Length = 910

 Score =  347 bits (890), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 125/742 (16%), Positives = 244/742 (32%), Gaps = 49/742 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +   G    ++       G  A +++G                     L+   +   +  
Sbjct: 41  VSPEGRFARVNAAWTTLTGWSADELVGHPTIKFIHPDSHAELIDSSRRLRETGSAINEVR 100

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           +   +G   +V        +  R+R        G++H    + + RA  +   +    L 
Sbjct: 101 VLCKDGR--WVW-------LQGRSRLGPHGEMIGLMHDISGEVEARAQLEAARRTHEMLA 151

Query: 209 EIKKGHSSV---EKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
           E              + D          L      +    +     +           + 
Sbjct: 152 EAAGIGIWSYEPADARIDWTPDAVAALGLTPAEIATPELFFARIAPEQRGKVAEAFSRAV 211

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL-----SHRNHPSLSAYFDEGEN 320
           ++      ++     +                     L     +  +           E 
Sbjct: 212 QTGEGGSMEYRLRGHHGRWLTFRSTYRAEPRPGGLHALKGISQNITDVARSRDKAIWSER 271

Query: 321 LTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIA-----GGLSTLLDAPK 374
                V+  P    VY     L   +P FL + K    D I  +      G         
Sbjct: 272 RARRLVEDAPFAVGVYDVDLRLRLVSPKFLEIFKATEADVIGRSLQELTNGSRRRFV--- 328

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
                A+   ++ R +   + A    H ++W                +   E +      
Sbjct: 329 AGVARALSGEIVTRREDRLLDAEGDEHCLRWEARPW----------RDVNGEIVGVITYM 378

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP-VEDIL 493
            +       +R+  I   +L   L A   G+  I+ E      +    ++ G     + +
Sbjct: 379 DDVTALAAARREARINARRLKVALGAARAGVYEIDHERASFWGSPEFHRMVGRRVGYEDV 438

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553
           R+     +       +     E   L  +   E        E +   +R+  +    SS 
Sbjct: 439 REAIWPMIHPEDRKKLYAAAAEWRRLGDQGAHEYDVRLCPSEGETRWIRVFHEARRDSSG 498

Query: 554 Y----SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                   + DI E K+ +  L  A++ A+  S  K+ FLA +SHEIRTP+  ++G   V
Sbjct: 499 RPRKAFGLVLDIDEHKRAELALMAAERAAQAASEAKAQFLANMSHEIRTPMNGVLGVLHV 558

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           +K +    L +    +       +G ++  +++D++DIS+IE+G++ L+ E V   E   
Sbjct: 559 LKRE----LPSGENADLLGEALAAGQMLSTLLDDVIDISRIEAGRLELNHEAVDPAELAR 614

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
             + L+   A+EK + +    A N+  I  D   V+Q   N++ NA+ FT  G  + +  
Sbjct: 615 GVVRLLAGPASEKGLSLDLDIAQNLGWIQTDATRVRQALFNLIGNAVKFTVKGS-VTVRV 673

Query: 730 TH---TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
                   + ++  V DTGVG+     E+  + F Q   S   R  G+GLGL +++ +  
Sbjct: 674 RRLGAADAQRLVFDVVDTGVGVPLAAQERLFERFQQADASTTRRFGGSGLGLAISRNLAR 733

Query: 787 ANMGKFYIFSTPAKGTLIEIIF 808
              G   + S P +G+   +  
Sbjct: 734 MLGGDITLRSKPGEGSTFSLTI 755



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 51/137 (37%), Gaps = 6/137 (4%)

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
           E E  +     +  SD   +++ EG     N A + L G+  ++++  P   F+  ++ +
Sbjct: 23  EAEAARW--FFDNASDLFTVVSPEGRFARVNAAWTTLTGWSADELVGHPTIKFIHPDSHA 80

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQE 567
            +      +                 K+ + + L+    +L         MHDIS   + 
Sbjct: 81  ELIDSSRRLRETGSAIN---EVRVLCKDGRWVWLQGR-SRLGPHGEMIGLMHDISGEVEA 136

Query: 568 KNKLSHAKKIAEKESSH 584
           + +L  A++  E  +  
Sbjct: 137 RAQLEAARRTHEMLAEA 153


>gi|170076780|ref|YP_001733418.1| two-component hybrid sensor kinase/response regulator
           [Synechococcus sp. PCC 7002]
 gi|169884449|gb|ACA98162.1| two-component hybrid sensor and regulator; PAS domain S-box protein
           [Synechococcus sp. PCC 7002]
          Length = 1076

 Score =  347 bits (890), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 102/568 (17%), Positives = 196/568 (34%), Gaps = 29/568 (5%)

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ-NNSKESFEYLSHRNHPSLSAYFDE 317
             + +  E     +  +   + +          ++ +   +    +      +    F+E
Sbjct: 219 QHIASHGEIPFCNEVRYRHRDGSTVWVLCSGKVIEWDAQGQPLRIIGSHIDLTPYKRFEE 278

Query: 318 GENLTPETVDKCPIPFFVYS------HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
               +  ++ +      + S       G L   +P  L +                 L+ 
Sbjct: 279 RLKRSEASLQEAQRLAHIGSWEVDLATGRLS-WSPELLRMFGLNMAQGPPTYDEHWALIH 337

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
                         +   +   +   A+L                   + +   + +   
Sbjct: 338 PDDQERLKRCVETAMRTGESYMVQYRAQLTN-----GQIFYHEARGSSQKDASGKTIRFF 392

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
           G   +  +  + ++ +    ++    LE + DG+   N +   +  +R    + GY   +
Sbjct: 393 GTALDITERVLAEQALRESELRWQFALEGSGDGVWDWNAQTNRVFFSRQWKAMLGYSEAE 452

Query: 492 ILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR-----II 544
           I      +   +  +  ++    +   L     +          K+     +      I 
Sbjct: 453 IGDTLMEWESRVHPDDLAMTYQAIQAHL-DGQTEIYRSEHRVRCKDGSYKWILDRGKVIE 511

Query: 545 IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
                       T  DI + KQ +  L  AK+ AE  +  KS FLA +SHEIRTP+  II
Sbjct: 512 WTPSGEPLRIIGTHSDIGDRKQAELALIDAKEAAEAAAHAKSMFLATMSHEIRTPMNGII 571

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           G   ++    +         E+A+    S   +L ++ND+LD SK+E+GK+ L      L
Sbjct: 572 GMLNLLL---YSEGLTTEQQEHAHIALSSAESLLMLLNDILDFSKMEAGKLQLETVDFDL 628

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGG 723
            +       L+   A EK + +           I  D   ++QI  N++SNAI FT  G 
Sbjct: 629 HQFFENFAKLMAFAAQEKGLNLIFDLRGLRHGSIQGDPGRLRQILTNLVSNAIKFTNQG- 687

Query: 724 QIIISTTHT---SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
           +++I           +    V DTG+G+   +L    +PF Q+      R  GTGLGL +
Sbjct: 688 EVMIRCQTERVGDRLDFTCSVTDTGIGIAAEKLNDLFEPFTQLEAGTTRRYGGTGLGLAI 747

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            + +     G   + STP +G+      
Sbjct: 748 TQRLCQVMGGTIEVISTPGEGSCFTFTL 775



 Score = 76.2 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/293 (9%), Positives = 81/293 (27%), Gaps = 14/293 (4%)

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364
               P      +   +L  + V   P    +     L  A+   + +        +    
Sbjct: 2   SAARPLRFLTPEIIASLLHQPVIVSPDLSLIALSDRLC-ADLQLVGVLVMADEQLLGTVS 60

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA----RLHTIQWNRENSLAMTFIPFEK 420
               L    +  +        + +        +A          +  +    +T +  + 
Sbjct: 61  PGDILRAIAQGENPQTATAAEIMQRPAPTYPVAALDQIESLCQYFAEQQLAWLTLVDEQG 120

Query: 421 ANQFPENMPQNGIEPEDVDTRINKR--KMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
                    +     + +D            E+     ILE    G    +    I   +
Sbjct: 121 RPVGILPGDRLAELRQHLDPEPAAAPEYSHHELKFFEEILENAFAGYWDWDCINNIEYLS 180

Query: 479 RAVSKLFGYPVEDILRKP--FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
            +  ++FGY   ++  +P  +   +       +NH L + ++               ++ 
Sbjct: 181 PSFKRMFGYADHELPNRPESWQKLIFPEDLQKVNHNLQQHIASHGEIPFCNEVRYRHRDG 240

Query: 537 KLLSLRIIIKKLPFSS-----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
             + +    K + + +         +  D++ +K+ + +L  ++   ++    
Sbjct: 241 STVWVLCSGKVIEWDAQGQPLRIIGSHIDLTPYKRFEERLKRSEASLQEAQRL 293



 Score = 44.2 bits (103), Expect = 0.085,   Method: Composition-based stats.
 Identities = 26/247 (10%), Positives = 57/247 (23%), Gaps = 21/247 (8%)

Query: 87  WNID-AHGYLKEISEELPKTIGNYAFKM---IGMRLCDVSDILHIDPNNH-IGDLLKRQN 141
           W +D A G L   S EL +  G    +           +      +     +   ++   
Sbjct: 299 WEVDLATGRL-SWSPELLRMFGLNMAQGPPTYDEHWA-LIHPDDQERLKRCVETAMRTGE 356

Query: 142 TWYGKTTLWPIEGT-NLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
           ++      +  + T       +         + +    R FG               +  
Sbjct: 357 SY---MVQYRAQLTNGQIFYHEARGSSQKDASGK--TIRFFGTALDITERVLAEQALRES 411

Query: 201 D-KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT----EYYAHKDDVLK 255
           + +    L     G      +   +F  +     L         T    E   H DD+  
Sbjct: 412 ELRWQFALEGSGDGVWDWNAQTNRVFFSRQWKAMLGYSEAEIGDTLMEWESRVHPDDLAM 471

Query: 256 T--EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ-NNSKESFEYLSHRNHPSLS 312
           T       L  +      +      + +          ++   S E    +   +     
Sbjct: 472 TYQAIQAHLDGQTEIYRSEHRVRCKDGSYKWILDRGKVIEWTPSGEPLRIIGTHSDIGDR 531

Query: 313 AYFDEGE 319
              +   
Sbjct: 532 KQAELAL 538


>gi|152994395|ref|YP_001339230.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1]
 gi|150835319|gb|ABR69295.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1]
          Length = 1310

 Score =  347 bits (889), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 94/389 (24%), Positives = 166/389 (42%), Gaps = 35/389 (8%)

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
               +  S+ E T D + I+     I+  N A      YP ++ L       +     + 
Sbjct: 392 ESEERFRSMFEITPDPVWIL-MNQKIVECNNAAINTLHYPAKEALLGLEMCDISPEKQTT 450

Query: 509 MNHYLTEILSLDLRQTL----EKITLGSTKEEKLLSLRIII--KKLPFSSCYSLTMHDIS 562
                + + S   + TL        +    + + +   + I            ++  D++
Sbjct: 451 GMLSSSSLNSHFEQVTLSGNTRTEWVFQRYDGEPIYADMTILSIAFNNHPATIISWRDVT 510

Query: 563 EWKQEKN------------------KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
           E    +                   +L  AK+ AE  +  KS+FLA +SHEIRTP+ +II
Sbjct: 511 ERVMSQQSLAQYKEKLEHDIALQTTELQTAKEAAENANQAKSEFLANMSHEIRTPMNSII 570

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           G S +          N +   Y   +  S   +L+I+ND+LD SKIE+ KM++   P  L
Sbjct: 571 GMSSLALQTPL----NDKQRGYIEKVSHSAESLLNIINDILDFSKIEARKMDIENVPFML 626

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG 723
              + +   +++L   EK + +       +P+ ++ D   ++QI LN+ +NA+ FT  G 
Sbjct: 627 PSLIHKVAHVLELKIEEKGLELIIDIDAEVPQQVVGDPTRLRQILLNLGNNAVKFTQQG- 685

Query: 724 QIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
           +III   H+ N +    +   V+DTG+G++  +     + F Q   S   R  GTGLGL 
Sbjct: 686 EIIIRAAHSKNNQDDNIIHFSVQDTGIGISKDKQNNLFQSFSQADTSTTRRFGGTGLGLA 745

Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           ++K ++    G  ++ S   KG+      
Sbjct: 746 ISKRLIQLMGGDIWVESEENKGSTFHFTI 774



 Score = 41.9 bits (97), Expect = 0.48,   Method: Composition-based stats.
 Identities = 17/170 (10%), Positives = 44/170 (25%), Gaps = 18/170 (10%)

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDI 360
            +   R      + F E E       +  P P ++  +  +   N + +    Y + + +
Sbjct: 376 AWAISRKVTRQLSGFIESEERFRSMFEITPDPVWILMNQKIVECNNAAINTLHYPAKEAL 435

Query: 361 EIAGGLS----------------TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
                                             N     +  R D   I A   + +I 
Sbjct: 436 LGLEMCDISPEKQTTGMLSSSSLNSHFEQVTLSGNTRTEWVFQRYDGEPIYADMTILSIA 495

Query: 405 WNRENSLAMTFIPFEKA--NQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
           +N   +  +++    +   +Q      +  +E +        +  +    
Sbjct: 496 FNNHPATIISWRDVTERVMSQQSLAQYKEKLEHDIALQTTELQTAKEAAE 545


>gi|158424746|ref|YP_001526038.1| PAS protein [Azorhizobium caulinodans ORS 571]
 gi|158331635|dbj|BAF89120.1| PAS protein [Azorhizobium caulinodans ORS 571]
          Length = 763

 Score =  347 bits (889), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 141/691 (20%), Positives = 266/691 (38%), Gaps = 72/691 (10%)

Query: 163 LAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKY 222
           LAALP  + +    G R +      RV         R+      +   +      E+   
Sbjct: 103 LAALPPRATSG---GRRIYVTDPSGRVIAAAPESAPRVTSLADLMDPSQPLTVFAERAGV 159

Query: 223 DIFSQQSPPPHLRMKNKVSSLTE-YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLN 281
              +         ++N    L +  Y    +          T   +              
Sbjct: 160 LEIAVGDTQMLATVRNLNPPLGQIVYLQPMNRALAVWSDSTTLTITLF------------ 207

Query: 282 QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNL 341
                   G +      SF + + R   +   Y D         +++     + +     
Sbjct: 208 -----ATTGAVLLILGFSFHWQASRAREADHIY-DTVRMRIDTALNRGRCGMWDWDMARG 261

Query: 342 F-YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400
             Y + +   +   +  D++   G ++ L       D+  +  +    ++R   +   R+
Sbjct: 262 RMYWSDTMFEILGLERRDELLSFGEIAKL----VHPDDGNLYELAQELAERPGASVD-RV 316

Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
             ++  R + + +            +     GI  +  + +    +     M+L   +E+
Sbjct: 317 FRMRTARGDFVWLRMRAEVVQQAGEDGPHLIGIAMDVTEAQRLAERTVTADMRLRDAIES 376

Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLTEILSL 519
            S+   + + +  ++  N     L   P + I+   PF          V    L      
Sbjct: 377 ISEAFVLWDSQNRLVLCNSKFQTLHELPDDAIVAGTPFETIATVGRHPVTRTPL---KPE 433

Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579
           D  +   +         + L +    ++      Y     DI+  K+ + +L   +K   
Sbjct: 434 DKPEEGSRAFEAQLSNGRWLKI---AERRTKDGGYVSVGTDITPLKRHEERLMDNEKRLM 490

Query: 580 K-----------------------------------ESSHKSDFLARVSHEIRTPLTAII 604
                                                +  KS+FLA +SHE+RTPL AII
Sbjct: 491 ALVADLRKSQQTLEHQAQQLAELAEKYSEEKTRAEDANRAKSEFLANMSHELRTPLNAII 550

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           GFSE++++  FGPLG+ +Y EY + I  SG  +LD++ND+LD+SKIE+G+M L  E + L
Sbjct: 551 GFSEIMESGMFGPLGSDKYREYCSDIKGSGTYLLDVINDILDMSKIEAGRMQLELEDIRL 610

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724
           DE +++A+ +  +  +EK++ +          +  D R++KQI LN+LSNA+ FTP GG 
Sbjct: 611 DEIIADAMRVTAVKGDEKQLDMTAQVGAGQ-VMRGDRRALKQILLNLLSNAVKFTPEGGH 669

Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
           + +          ++ + DTG+G+  + L K  +PF Q+ +      +G+GLGL +AK++
Sbjct: 670 VAVRAKVN-GGAAVIAIEDTGIGIPRHALNKIGRPFEQVESQFTKTHKGSGLGLAIAKSL 728

Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            + + G   I ST   GT + +  P++   H
Sbjct: 729 AELHGGSMRIRSTEGAGTTVVVRLPIHGVPH 759



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 48/406 (11%), Positives = 112/406 (27%), Gaps = 35/406 (8%)

Query: 84  RFTWNIDAHGYLKEISEE-------LPKTIGNYAFKMIGMRLCDVSDILHID-PNNHIGD 135
           R  +  D  G +   + E       L   +       +     + + +L I   +  +  
Sbjct: 115 RRIYVTDPSGRVIAAAPESAPRVTSLADLMDPSQPLTV---FAERAGVLEIAVGDTQMLA 171

Query: 136 LLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPI--YSRNREFSGFRGFGI-VHVNRVDND 192
            ++  N   G+          L V  D   L I  ++         GF      +R    
Sbjct: 172 TVRNLNPPLGQIVYLQPMNRALAVWSDSTTLTITLFATTGAVLLILGFSFHWQASRAREA 231

Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL-----TEYY 247
                    +  + L+  + G    +  +  ++   +    L ++ +   L      +  
Sbjct: 232 DHIYDTVRMRIDTALNRGRCGMWDWDMARGRMYWSDTMFEILGLERRDELLSFGEIAKLV 291

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
              D  L      L     +S+       T   +    +     +Q   ++    +    
Sbjct: 292 HPDDGNLYELAQELAERPGASVDRVFRMRTARGDFVWLRMRAEVVQQAGEDGPHLIGIAM 351

Query: 308 HPSLSAYFDEG----ENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEI 362
             + +    E     +    + ++     F ++     L   N  F  L +      +  
Sbjct: 352 DVTEAQRLAERTVTADMRLRDAIESISEAFVLWDSQNRLVLCNSKFQTLHELPDDAIVAG 411

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW---------NRENSLAM 413
               +             +KP    + +    A  A+L   +W         +       
Sbjct: 412 TPFETIATVGRHPVTRTPLKPED--KPEEGSRAFEAQLSNGRWLKIAERRTKDGGYVSVG 469

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459
           T I   K ++      +  +     D R +++ +E +  QL  + E
Sbjct: 470 TDITPLKRHEERLMDNEKRLMALVADLRKSQQTLEHQAQQLAELAE 515


>gi|226310981|ref|YP_002770875.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC
           100599]
 gi|226093929|dbj|BAH42371.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC
           100599]
          Length = 587

 Score =  347 bits (889), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 93/367 (25%), Positives = 171/367 (46%), Gaps = 24/367 (6%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           ++     +L  +L   + G+  I+ +  I+  N AV KL G    +I+ K   + +E   
Sbjct: 242 EISENQQRLAGVLTNMTSGVIFISEQRRIMLVNPAVEKLLGTAGHEIVGK---LHIEAGK 298

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL--PFSSCYSLTMHDISE 563
              ++ Y+   L  D  +   +       +E++L +           S    + +HDI++
Sbjct: 299 SFGLSQYIDRCL--DRSEKFRQEVHIYYPQERILDVNFAPYINFKGESRGVVVVLHDITD 356

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            ++ +                +S+F+A VSHE+RTP+T+I GF+E +             
Sbjct: 357 IRRLE--------------KMRSEFVANVSHELRTPITSIKGFTETLLEGAMQ--DEETC 400

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
             +   I      +  ++ D+LD+SKIE  ++ LH   V L + +S A++++   A  K 
Sbjct: 401 RNFLQIISDESERLYRMIRDILDLSKIEQKRIPLHLGQVHLQDLISSAVAIMHDQAQRKE 460

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
           + I          ++ D   ++QI LN+L+NAI +T  GG+I I T    +E + ++V D
Sbjct: 461 LTITLPSPKPDIWLMTDKDCLQQIILNLLTNAIAYTQEGGKISIKTE-ADSENITIQVMD 519

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TG+G+   EL +  + F ++  ++     GTGLGL + K +V+   G   + S   +GT 
Sbjct: 520 TGIGIPEKELTRIFERFYRVDKARSRDSGGTGLGLAIVKHLVENLHGHISVESKEGRGTT 579

Query: 804 IEIIFPL 810
             +  PL
Sbjct: 580 FTVTLPL 586


>gi|146280453|ref|YP_001170606.1| hypothetical protein PST_0056 [Pseudomonas stutzeri A1501]
 gi|145568658|gb|ABP77764.1| conserved hypothetical protein [Pseudomonas stutzeri A1501]
          Length = 1012

 Score =  347 bits (889), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 110/594 (18%), Positives = 219/594 (36%), Gaps = 37/594 (6%)

Query: 231  PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG 290
             P   +++   +L   +      L      L      S   +             +    
Sbjct: 442  EPQRLLEDAAQALVHVHPQDLPRLHRALLRL-AVHPGSGAVEFRIQHPQRGLLWAEGRAS 500

Query: 291  TLQNNSKES---FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG---NLFYA 344
              +                     +    + E+     V   P   +   +     + Y 
Sbjct: 501  AERLADGTVLWHGFVTEITELMEATRALQKSESRFRAMVGNLPGVVYRCRNDGRRRMSYL 560

Query: 345  NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
            +     LT Y + D +         L  P         P           +   R++ I 
Sbjct: 561  SEGIERLTGYPASDFVGDRVRSYGSLIHPDDQAQAEQSPA--------QDSFE-RIYRIT 611

Query: 405  WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
                 ++ +         +       +G   +  D  + K++ME     L  +++   D 
Sbjct: 612  NAEGRTVYVREKARVLRERDDPVGWCDGFIWDVTDQALAKQEMEERERYLSMLIDNVIDA 671

Query: 465  IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
            I II+  GII + N A  ++FGY  ++++ +  ++ + +   S  + YL         + 
Sbjct: 672  IIIIDGRGIIETFNHAAEQIFGYRSDEVIGRNLSMLMPEPDRSAHDGYLDHYTRRGTSRA 731

Query: 525  LE--KITLGSTKEEKLLSLRIIIKKL--PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
            LE  +      +  +  ++ + + ++       +   + DI+E K+ +            
Sbjct: 732  LEQNRELTALRRNGETFTIELRVSQISHHGERRFIGLVRDITERKRIE------------ 779

Query: 581  ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
                KS+ ++ VSHE+RTPLT+I G   +I     G   +P  ++      ++   +  +
Sbjct: 780  --RMKSELVSIVSHELRTPLTSISGALGLIVGGALGE-PSPTMLQMLTIAHQNSLRLGRL 836

Query: 641  VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILAD 700
            V+DLLD+ K+ +GKM L     SL   +  A    Q YA +  + ++      + +++AD
Sbjct: 837  VDDLLDMDKLVAGKMTLQLHGHSLVRQMQLATEANQGYAAKHGVYLQLEPLPTL-QLIAD 895

Query: 701  LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760
               ++Q+  N++SNA+ F+P GG + +         V + VRD G G+      +  + F
Sbjct: 896  DDRLQQVLANLISNAVKFSPEGGTVSLGAQQR-GAWVRIWVRDQGPGIAPEFHARIFQKF 954

Query: 761  GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
             Q  +S   +  GTGLGL ++K +++   G+    S P  G       PL   +
Sbjct: 955  SQADSSDTRQKGGTGLGLAISKELIEHMHGRIGFDSEPGHGACFWCELPLAPAA 1008



 Score = 45.8 bits (107), Expect = 0.033,   Method: Composition-based stats.
 Identities = 24/270 (8%), Positives = 61/270 (22%), Gaps = 20/270 (7%)

Query: 70  SENTFVFDPIPRTVRFTWNIDAHGY--LKEISEELPKTIGNYAFKMIG---MRLCDVSDI 124
           SE+ F            +     G   +  +SE + +  G  A   +G        +   
Sbjct: 531 SESRFRAMVGNLPG-VVYRCRNDGRRRMSYLSEGIERLTGYPASDFVGDRVRSYGSLIHP 589

Query: 125 LHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIV 184
                        +       +            V +   A  +  R+       GF  +
Sbjct: 590 DDQ------AQAEQSPAQDSFERIYRITNAEGRTVYVREKARVLRERDDPVGWCDGF--I 641

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL--RMKNKVSS 242
                    +   +  ++  S L +       +   +  I +       +     ++V  
Sbjct: 642 WDVTDQALAKQEMEERERYLSMLIDNVIDAIIIIDGRGIIETFNHAAEQIFGYRSDEVIG 701

Query: 243 LTEYYAHKDDVLKTEKYPL----LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE 298
                   +         L          +L +  +   +  N  T        Q +   
Sbjct: 702 RNLSMLMPEPDRSAHDGYLDHYTRRGTSRALEQNRELTALRRNGETFTIELRVSQISHHG 761

Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
              ++      +     +  ++     V  
Sbjct: 762 ERRFIGLVRDITERKRIERMKSELVSIVSH 791



 Score = 43.9 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/140 (12%), Positives = 37/140 (26%), Gaps = 11/140 (7%)

Query: 98  ISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY-----GKTTLWPI 152
            +    +  G  + ++IG  L  +        ++   D   R+ T        + T    
Sbjct: 684 FNHAAEQIFGYRSDEVIGRNLSMLMPEPDRSAHDGYLDHYTRRGTSRALEQNRELTALRR 743

Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212
            G    + + ++ +  +   R        G+V           +   L    SH      
Sbjct: 744 NGETFTIELRVSQISHHGERRFI------GLVRDITERKRIERMKSELVSIVSHELRTPL 797

Query: 213 GHSSVEKEKYDIFSQQSPPP 232
              S         +   P P
Sbjct: 798 TSISGALGLIVGGALGEPSP 817



 Score = 37.7 bits (86), Expect = 8.1,   Method: Composition-based stats.
 Identities = 24/274 (8%), Positives = 71/274 (25%), Gaps = 11/274 (4%)

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDI----FSQQSPPPHLRMKNKV 240
               +     A    + ++   +    +   S++  + +           P    M+   
Sbjct: 88  RQADMVATALAGNAEVLRQMRLIDAALRDGRSLDDPRLERSRQRLRAALTPAWRSMQRHQ 147

Query: 241 SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF 300
           +   + +     V            ++   ++     +   +   +Q+   +      S 
Sbjct: 148 ALQLQLFWGDAGVTVLRMQQSERFGDTQAAQRPMLQRVL--RDGIEQFGLEVDALGASSR 205

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDI 360
             +  R      +       +    + + P      + G     N   L  ++      +
Sbjct: 206 AIVPLRAVDRQDSEVIGALEVGYNVLPELPDLSAQLAAGLALIVNREALQASQTTPPSGV 265

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
           +++ G   LL        +A + +   ++       S +   +      S  +  IP   
Sbjct: 266 QLSEGSDWLLIGH-----SATQVLHWAQAGVLPEPGSGKGSRLLDADGRSYILNQIPLHD 320

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
             Q   + P         D    + +      +L
Sbjct: 321 EQQAEPSTPPLAAALAWRDISAMQGEHLQAERRL 354


>gi|296271900|ref|YP_003654531.1| multi-sensor hybrid histidine kinase [Arcobacter nitrofigilis DSM
           7299]
 gi|296096075|gb|ADG92025.1| multi-sensor hybrid histidine kinase [Arcobacter nitrofigilis DSM
           7299]
          Length = 1420

 Score =  347 bits (889), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 109/503 (21%), Positives = 209/503 (41%), Gaps = 26/503 (5%)

Query: 314 YFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                E    + +D       +    GNL   + SF     Y + +  E+      +   
Sbjct: 454 EQYLSEKKYKDLLDYASDAIHILDKEGNLIEFSQSFAQSLGYTNEEMWELNIVDWDIFI- 512

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
                      V     +     +S      + +             + N          
Sbjct: 513 -------LEVEVKNRIKELIDFPSSFEAKHKRKDGSIIDVQINAKGIEINGEE---YLYA 562

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
            + +    +  ++++  E   + +I++  +  IA+I+  G ++  N+      GY  E+I
Sbjct: 563 SQRDITKQKKLEKEILSEKDFISTIIDNANAIIAVIDSMGRMIKINKYAQDFVGYAEEEI 622

Query: 493 LRKPFTV--FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
             +P+    FL ++    +   + +    ++ +  +   +    EEK+     ++ +   
Sbjct: 623 ASEPYFWSRFLPKDKKQKVLEIVKKANKGEIVKNFKNSWISKDGEEKVFEWSNMLVQKDD 682

Query: 551 S--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
              +  +    D++E  +   +L  AKK AEK +  KS+FLA +SHEIRTP++ + G   
Sbjct: 683 GSMNYIATIGIDVTENHELLEELKGAKKNAEKANVVKSEFLANMSHEIRTPISGVTGLIS 742

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
           +I +    PL      +Y N   +S N +L I+ND+LD SKIE+GK+++  +  SL+E  
Sbjct: 743 LILDMPLEPL----QRDYLNKAKKSSNALLSIINDILDYSKIEAGKLDIIEQDFSLEEIF 798

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIII 727
               +L      +K++        NIP  I+ D   + QI  N++ NAI FT   G + +
Sbjct: 799 KNISNLFGYETYKKQLEFTFVLDGNIPSLIIGDSLRLTQILNNLVGNAIKFT-ENGYVAL 857

Query: 728 STTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
            +      E    +   + DTG+G++    +K    F Q+  S + +  G+GLGL + K 
Sbjct: 858 KSEIKEINEDVVVLRFCIEDTGIGISKEGQKKLFNTFEQLDTSNKRKYSGSGLGLSITKQ 917

Query: 784 MVDANMGKFYIFSTPAKGTLIEI 806
           +++   GK ++ S   KG+    
Sbjct: 918 LIELMHGKIWLESEEGKGSKFYF 940


>gi|288941216|ref|YP_003443456.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
 gi|288896588|gb|ADC62424.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
          Length = 1169

 Score =  347 bits (889), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 112/617 (18%), Positives = 222/617 (35%), Gaps = 44/617 (7%)

Query: 230 PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYF 289
           P   +   +++  L +  A           PL+   +++  +++                
Sbjct: 55  PWDIIISDDRLPGLDDPKALARMRRGWPDVPLIVLLDAA--DEDIGVRAMKAGANDYILK 112

Query: 290 GTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSF 348
           G L          L   N    +             +D       V    G +   N   
Sbjct: 113 GHLARLGVLVERELQEANRRRQTLVTKVQ---FRALLDSVQDAIMVVDEHGRIQVYNQGA 169

Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD-RTCIAASARLHTIQWNR 407
             +  Y   + +    G+  LL              +    D         R   ++  R
Sbjct: 170 EAIFGYAMREMLGQ--GIGFLLPGDGYERLKCNPVQLKSPGDLTGTQVYERRYVVVEGRR 227

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
            +   +T            +     I  +  + +  +  +     +   ++++ S  I  
Sbjct: 228 HDGRMLTLEASSSCASVFGSRTYTFILRDITEQQQAEAALRESERRYRELVQSASSAIIR 287

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS---VMNHYLTEILSLDLRQT 524
             R+G +   N    + FG+  E+++ K     L  +  S    +   +  +L+      
Sbjct: 288 WTRDGTLTFFNEYAERFFGWSAEEVVGKCRIDILVPDQTSTGTDLRGLIENLLAHPEDYR 347

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKN----------- 569
              I     ++ + + +    + +  +            D++   Q +            
Sbjct: 348 SN-INENVCRDGRRVWMSWTNQAIRDAHGAVSEILSVGSDVTARLQAEEAVRRLNADLEQ 406

Query: 570 -------KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
                  +L  A++ A + +  +S+FLA +SHEIRTP+ A++G + +++ Q   P     
Sbjct: 407 RVTERTAELRAAREQALRLAQARSEFLANMSHEIRTPMNAVLGLAYLLERQENLP---EE 463

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             + A  I  SG  +L I+ND+LD+SKIESGK+ +      L + +    +++   A  K
Sbjct: 464 ACDLARKIYHSGQSLLGIINDILDVSKIESGKILIEQTRFQLSQVLDNLATIMTTAARGK 523

Query: 683 RILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----V 737
            + +      +    +L D   + QI +N+ +NAI FT SG  + +  T   +      +
Sbjct: 524 DLALAIVPPRDCDWPLLGDPLRLGQILINLTNNAIKFTDSG-VVEVRITPVESSASNLVM 582

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
              VRDTG+G+      +  +PF Q   S   R  G+GLGL +++ +V+   G+  + S 
Sbjct: 583 RFTVRDTGIGIDAETQARLFQPFMQADASTTRRFGGSGLGLMISRQLVELMGGRLGVESA 642

Query: 798 PAKGTLIEIIFPLYDTS 814
           P  G+      PL  T 
Sbjct: 643 PGVGSTFWFEVPLGRTE 659



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/327 (10%), Positives = 79/327 (24%), Gaps = 29/327 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D HG ++  ++      G    +M+G  +  +      +        LK      G   
Sbjct: 156 VDEHGRIQVYNQGAEAIFGYAMREMLGQGIGFLLPGDGYERLKCNPVQLKSPGDLTGTQV 215

Query: 149 L---------WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199
                        +G  L +    +   ++  +R ++      I+          A  + 
Sbjct: 216 YERRYVVVEGRRHDGRMLTLEASSSCASVFG-SRTYT-----FILRDITEQQQAEAALRE 269

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLKT 256
            ++++  L +              +               +  V          D     
Sbjct: 270 SERRYRELVQSASSAIIRWTRDGTLTFFNEYAERFFGWSAEEVVGKCRIDILVPDQTSTG 329

Query: 257 EKYPLLTSEESSLPEQEDF-----HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
                L     + PE            +  +         +++      E LS  +  + 
Sbjct: 330 TDLRGLIENLLAHPEDYRSNINENVCRDGRRVWMSWTNQAIRDAHGAVSEILSVGSDVTA 389

Query: 312 SAYFDEGENLTPETVDK------CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365
               +E        +++        +         L  A   FL    ++    +    G
Sbjct: 390 RLQAEEAVRRLNADLEQRVTERTAELRAAREQALRLAQARSEFLANMSHEIRTPMNAVLG 449

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRT 392
           L+ LL+  +     A            
Sbjct: 450 LAYLLERQENLPEEACDLARKIYHSGQ 476


>gi|183220873|ref|YP_001838869.1| putative sensory transduction histidine kinase [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
 gi|189910970|ref|YP_001962525.1| two component response regulator sensor histidine kinase/response
           regulator subunits [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167775646|gb|ABZ93947.1| Sensor histidine kinase and response regulator of a two component
           complex [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|167779295|gb|ABZ97593.1| Putative sensory transduction histidine kinase [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 914

 Score =  347 bits (889), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 117/561 (20%), Positives = 226/561 (40%), Gaps = 20/561 (3%)

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
           L   +  S   ++ + T +            +++       YLS   + + S   +    
Sbjct: 199 LNQGQIPSFQIKKRYITKSKESIWTILNKSIIRDTLGNPLYYLSQILNMTDSIQSEMELR 258

Query: 321 LTPETVDKCPIPFFVYSHGNLFYANPS-FLLLTK--YKSVDDIEIAGGLSTLLDAPKLSD 377
                +D+      +         N + +  +TK  ++  +D              + S 
Sbjct: 259 SISRLLDQMANLAKIGGWDLDLKTNQANWTNITKRIHEVEEDYIPNVENGLSFYHSEESR 318

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
           N     V    S+         + T +    N   +      +  +  + +   GI  + 
Sbjct: 319 NKITTAVEALISEGKEYDLELEMVTAK---GNQTWIRTNGRAEW-ENGKVVKIYGIIQDI 374

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP--VEDILRK 495
            + +  +  +  +   L S +E     +A++++E   ++ ++     +  P   E+I+ K
Sbjct: 375 NERKEWEMALASQTSILWSFVEHAPAAVAMLDQEMRYVALSQRWIDDYKIPLSKEEIIGK 434

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL--PFSSC 553
                      +    +   +L   L++  +        +++++   I    L       
Sbjct: 435 CHYEIFPNIGEAWKEIHARGLLGEVLKRDEDIWRPPGWDKDQVIQWEIRPWTLLSGGIGG 494

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
             +   DI+E  + K +L  AK++AE   + KS+FLA +SHEIRTPL  IIG+S+++   
Sbjct: 495 ILMFTRDITESYETKLELKKAKELAENAYNAKSEFLANMSHEIRTPLNGIIGYSDLLAET 554

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
                 N    EYA  + +S + +L IVND+LD SK E+GK+ L   P  L   + EAI 
Sbjct: 555 LVDTSFN----EYAQIVKQSAHTLLSIVNDILDFSKAEAGKLQLAEVPNDLKNLILEAIK 610

Query: 674 LVQLYANEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSG----GQIIIS 728
           ++ + A    + IR     +IP +L  D   ++Q+ LN++ NAI FT +G        + 
Sbjct: 611 IMDIQAIVHGLDIRLHIDESIPNVLMFDSNRLRQVMLNLIGNAIKFTETGFIECRLTRLE 670

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
           +      +V + V+DTG+G+     +K    F Q   S   +  GTGLGL + + ++   
Sbjct: 671 SAIKQEVKVRISVKDTGIGIAKENQKKIFDSFTQEDFSTTRKFGGTGLGLAICRQLLQLM 730

Query: 789 MGKFYIFSTPAKGTLIEIIFP 809
             +  + S   +G+      P
Sbjct: 731 KSELKLKSEVGQGSEFFFEIP 751



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 31/375 (8%), Positives = 98/375 (26%), Gaps = 21/375 (5%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           + HG + E++  L + +G  + ++    L D++    +       + L +      +   
Sbjct: 152 NPHGEMIEVNPILCEWLGYDSDELKSKSLSDLTHPDDLPIELSYLEKLNQGQIPSFQIKK 211

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
             I  +   +   L    I         +     +             + + +    +  
Sbjct: 212 RYITKSKESIWTILNKSIIRDTLGNPLYY--LSQILNMTDSIQSEMELRSISRLLDQMAN 269

Query: 210 IKKGHSSVEKEKYDIFSQQSPP------PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
           + K        K +  +  +            + N  + L+ Y++ +     T     L 
Sbjct: 270 LAKIGGWDLDLKTNQANWTNITKRIHEVEEDYIPNVENGLSFYHSEESRNKITTAVEALI 329

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
           SE      + +  T   NQ   +   G  +  + +  +        +    ++       
Sbjct: 330 SEGKEYDLELEMVTAKGNQTWIR-TNGRAEWENGKVVKIYGIIQDINERKEWEMALASQT 388

Query: 324 ETV----DKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
             +    +  P     +         +  ++   K      +     +         +  
Sbjct: 389 SILWSFVEHAPAAVAMLDQEMRYVALSQRWIDDYKIP----LSKEEIIGKCHYEIFPNIG 444

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQ-WNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
            A K +         +     +     W+++  +     P+   +             + 
Sbjct: 445 EAWKEIHARGLLGEVLKRDEDIWRPPGWDKDQVIQWEIRPWTLLSGG--IGGILMFTRDI 502

Query: 438 VDTRINKRKMEIEVM 452
            ++   K +++    
Sbjct: 503 TESYETKLELKKAKE 517



 Score = 60.0 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/262 (10%), Positives = 82/262 (31%), Gaps = 22/262 (8%)

Query: 332 PFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLST---LLDAPKLSDNNAIKPVMLY 387
            + V+     + Y +P  +                L+       + + + +  +  +   
Sbjct: 25  GYLVWDTNVGIVYPSPIAIRSMGLSHHQPFPAECILTHSGMRFQSEETTSDFILGRICFD 84

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
            S+            +    +  + +    F    +                     +  
Sbjct: 85  PSNSAGFPFRFHSKEVFELGKRFIILALDAFLDEKEKNLPPIL--------------QSA 130

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
           EI      S  + ++ G+ I N  G ++  N  + +  GY  +++  K  +     +   
Sbjct: 131 EISRDLFTSSFQYSNIGMEISNPHGEMIEVNPILCEWLGYDSDELKSKSLSDLTHPDDLP 190

Query: 508 VMNHYLTEILSLDLRQT-LEKITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEW 564
           +   YL ++    +    ++K  +  +KE     L   I +    +   Y   + ++++ 
Sbjct: 191 IELSYLEKLNQGQIPSFQIKKRYITKSKESIWTILNKSIIRDTLGNPLYYLSQILNMTDS 250

Query: 565 KQEKNKLSHAKKIAEK-ESSHK 585
            Q + +L    ++ ++  +  K
Sbjct: 251 IQSEMELRSISRLLDQMANLAK 272


>gi|20808059|ref|NP_623230.1| sensory transduction histidine kinase [Thermoanaerobacter
           tengcongensis MB4]
 gi|20516640|gb|AAM24834.1| Sensory transduction histidine kinases [Thermoanaerobacter
           tengcongensis MB4]
          Length = 456

 Score =  347 bits (889), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 90/372 (24%), Positives = 172/372 (46%), Gaps = 28/372 (7%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           R    ++      L +IL++ ++G+   +    IL  N +  K+ G   +D+  +     
Sbjct: 101 RETIEELNDRNATLEAILKSIANGVIAFDNAERILMMNDSAKKILGIEEKDLTGRRVFEV 160

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLT 557
           +     S +      +    +  +         K    L + I     P S     + L 
Sbjct: 161 IRS---SKLYEVFETLRKNKVLSSKSLELNFFNK---HLKVYISPILHPVSHVNLGFVLV 214

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
           + DI+E ++ +                +S+F+A VSHE+RTPLT+I GF E +   R G 
Sbjct: 215 IDDITEMRKLE--------------KIRSEFVANVSHELRTPLTSIRGFIETL---RSGA 257

Query: 618 LGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
           + NP   E + + ID     +  ++ND+L +S+IE+ K     E + +D+ + + + +++
Sbjct: 258 IENPEAREKFLDIIDFEAERLTRLINDILTLSEIENVKEGYPVEKIEMDKEIEDILYIME 317

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
             A +K I ++         I+A+     Q+ +N++ N I +T  GG + +ST     E+
Sbjct: 318 KAAKDKSITLKRDLNCGNLTIIANRDRFHQMMINLIDNGIKYTQEGGFVKVSTRLE-GEK 376

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           +I+ V D G+G+   ++ +  + F ++  S+  +  GTGLGL + K +V++  G+  + S
Sbjct: 377 IIIEVEDNGIGIPKDKIPRLFERFYRVDKSRSRKLGGTGLGLAIVKHIVESMKGEISVES 436

Query: 797 TPAKGTLIEIIF 808
              KGT   I F
Sbjct: 437 EVGKGTKFTIRF 448


>gi|89094968|ref|ZP_01167898.1| serine/threonine kinase with two-component sensor domain
            [Oceanospirillum sp. MED92]
 gi|89080752|gb|EAR59994.1| serine/threonine kinase with two-component sensor domain
            [Oceanospirillum sp. MED92]
          Length = 2109

 Score =  347 bits (889), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 103/379 (27%), Positives = 171/379 (45%), Gaps = 16/379 (4%)

Query: 445  RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            + +E       S+     +GI   + +G  LS N A++ L GY   D      T    Q 
Sbjct: 1475 QSLEQSEYDYKSLFLNAVEGIFRASPDGHFLSANPALATLLGYRSMDEFHDEITDIASQC 1534

Query: 505  TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS----LTMHD 560
                              + L   T    K  + + + +  +K+  +S        ++ D
Sbjct: 1535 FYVDHERVAFLEKLDTQHKILNFETRWRKKSGEPIYVSLSARKVLDASGQVQYYEGSLTD 1594

Query: 561  ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
            I+E K ++     A+  AE E+  KS FLA +SHEIRTP+  I+G ++++K  +     N
Sbjct: 1595 ITERKAKEAA-EQARHEAEAENEAKSMFLATMSHEIRTPMNGILGMAQLMKQGQL----N 1649

Query: 621  PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
                E  + I  +G  +L I+N++LD SKIESG++ L  +P  + + + E  +L +  A 
Sbjct: 1650 SEQNEQIDTIYNAGQTLLSILNNILDYSKIESGQLELEEKPFLIQDVMDEIYNLFKPVAQ 1709

Query: 681  EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT----HTSNEE 736
            EK + I  +    +P +  D R + QI +N+ SNA+ FT  G  I IS           +
Sbjct: 1710 EKSLQIVPNIERTLPAVSGDPRVLSQILMNLCSNALKFTHQG-YIRISCEGLPDTQDKLK 1768

Query: 737  VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
                + DTG+G+      +  + F Q  +S   R  GTGLGL + + +++   G+    S
Sbjct: 1769 TRFTIEDTGIGIPEKAQSRIFQHFTQADSSITRRYGGTGLGLAITRQIIERLNGEIGFES 1828

Query: 797  TPAKGTLIEI--IFPLYDT 813
            T  +GT       FP+ D 
Sbjct: 1829 TEEQGTTFWFELSFPITDE 1847



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/142 (10%), Positives = 42/142 (29%), Gaps = 6/142 (4%)

Query: 86   TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI-LHIDPNN-HIGDLLKRQNTW 143
             +     G+    +  L   +G  +       + D++    ++D       + L  Q+  
Sbjct: 1495 IFRASPDGHFLSANPALATLLGYRSMDEFHDEITDIASQCFYVDHERVAFLEKLDTQHKI 1554

Query: 144  YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                T W  + +   + + L+A  +   + +   + G   +          A  +    +
Sbjct: 1555 LNFETRWRKK-SGEPIYVSLSARKVLDASGQVQYYEG--SLTDITERKAKEAAEQA-RHE 1610

Query: 204  FSHLHEIKKGHSSVEKEKYDIF 225
                +E K    +    +    
Sbjct: 1611 AEAENEAKSMFLATMSHEIRTP 1632


>gi|316934984|ref|YP_004109966.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas
           palustris DX-1]
 gi|315602698|gb|ADU45233.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas
           palustris DX-1]
          Length = 607

 Score =  347 bits (889), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 129/590 (21%), Positives = 223/590 (37%), Gaps = 36/590 (6%)

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTS--EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297
           +    +   H    L         +      L     F    L    +            
Sbjct: 7   IGECLDALLHPSARLDALTSARHRAFIAPRLLGSLAAFAAFPLYLVLRGAPTAIEAAALA 66

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSV 357
                +      S +  ++    L+   +    I     + G   +   + + L      
Sbjct: 67  WLIAPILVAWFLSRTGRYEHAHFLSSLALTVLVIGVAALTGGIQSF---AAVWLVVIPIE 123

Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
             +  +  + T   +  L     +  +  +       AA     T+      S A+    
Sbjct: 124 AALSASRRVVTFAVSLALGGALLLIALGGFGLLPQPEAAETSNTTLAAFGIGSAALYASV 183

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
                 +                      + +E  +   +    SD I+  NR G +   
Sbjct: 184 LAYGAAWLARTNG--------------ALLNVEEERYRLLARNMSDVISRHNRNGAVRFI 229

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG---STK 534
           + A   L G P+  +        +           +++        ++E          +
Sbjct: 230 SPAAENLIGVPMVQLAEHGLFDRVHVADRPAYLKAISDAARGRETGSVEFRIRREVVRDE 289

Query: 535 EEK-----LLSLRIIIKKLP--------FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE 581
             +      + + +  + L           +     M DI+E K  +  L  A+  A++ 
Sbjct: 290 RGRPSAAEFVWVEMRCRPLEPGAATAPTGETEVVAVMRDITERKLHEQALDEARAEADRA 349

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
              KS FLA +SHE+RTPL AIIGFS++I  +    LG  R  EYA  I+ SG  +L +V
Sbjct: 350 DDAKSRFLATMSHELRTPLNAIIGFSDMIVQEDELRLGAERRKEYAQLINDSGQHLLSVV 409

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701
           N +LD+SK+ESG   +  EP +   A+    +L+ L A +  I + T    N+P ++ D 
Sbjct: 410 NGILDMSKMESGNFEIVPEPFAPRPALLNCCNLLALKARDSGIDLVTRAPENLPDVVGDP 469

Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761
           R+ KQI LN++SNA+ FT  GG + +S     +  ++L V DTGVG+   +L++   PF 
Sbjct: 470 RAFKQILLNLVSNAVKFTERGGTVTVSAAVE-STRLVLCVTDTGVGIAEEDLKRLGDPFF 528

Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
           Q   + Q R EGTGLGL + K++V  + G+  + S    GT + +  PL 
Sbjct: 529 QAGKTYQRRHEGTGLGLSIVKSLVRMHGGEIDVRSQIDCGTTVTVSLPLA 578



 Score = 38.5 bits (88), Expect = 5.1,   Method: Composition-based stats.
 Identities = 25/261 (9%), Positives = 64/261 (24%), Gaps = 28/261 (10%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNT---- 142
             + +G ++ IS      IG    ++    L D   +         I D  + + T    
Sbjct: 219 RHNRNGAVRFISPAAENLIGVPMVQLAEHGLFDRVHVADRPAYLKAISDAARGRETGSVE 278

Query: 143 -WYGKTTLWPIEGT---NLYVPIDLAALPIYSRNREFSGFRG----FGIVHVNRVDNDPR 194
               +  +    G      +V +++   P+       +   G      ++          
Sbjct: 279 FRIRREVVRDERGRPSAAEFVWVEMRCRPL--EPGAATAPTGETEVVAVMRDITERKLHE 336

Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254
                   +     + K    +    +                  +   ++    +D++ 
Sbjct: 337 QALDEARAEADRADDAKSRFLATMSHELRTPLNA-----------IIGFSDMIVQEDELR 385

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN--NSKESFEYLSHRNHPSLS 312
              +     ++  +   Q     +N      K   G  +           L +  +    
Sbjct: 386 LGAERRKEYAQLINDSGQHLLSVVNGILDMSKMESGNFEIVPEPFAPRPALLNCCNLLAL 445

Query: 313 AYFDEGENLTPETVDKCPIPF 333
              D G +L     +  P   
Sbjct: 446 KARDSGIDLVTRAPENLPDVV 466


>gi|298529315|ref|ZP_07016718.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298510751|gb|EFI34654.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 806

 Score =  347 bits (889), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 96/409 (23%), Positives = 176/409 (43%), Gaps = 24/409 (5%)

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
                 +              + D R  +  +         + E     I   + +G ++
Sbjct: 263 NRVPTEDDKKVIGIIASALSAEEDRRQAREDLVRSQESFKRLAEQCPISIMQFDSQGRLI 322

Query: 476 STNRAVSKLFG---YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD---LRQTLEKIT 529
             N    + F       + +L       L     + +N  +++IL+ +   + +      
Sbjct: 323 FVNEWHMQHFAGNAVDKQKLLGMHI-QELPGLEKAGINEQVSQILNGEHLDVPEIFFPEF 381

Query: 530 LGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
           +G         + +    L          L   D++ WK+ + +L  A++ AE  S  K+
Sbjct: 382 IG----GGCGWVSLRGVPLKEGDKITGGILIREDLTAWKKTEQELVKARQEAEAASRVKT 437

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
           +FLA +SHEIRTPL  I G  +++K        +    EY +   +S + +  +++D+LD
Sbjct: 438 EFLANMSHEIRTPLNGIAGMLQLLKETSL----DMEQKEYVDLGIKSSHRLTRLLSDILD 493

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVK 705
           +S+IE+G M +H E     E  S    L  +    K + +   F    P R++ D   ++
Sbjct: 494 LSRIEAGHMTIHQEEFDPLELCSSVNELFAVTTRNKHLSLECIFQEGFPSRLVGDEARIQ 553

Query: 706 QIALNILSNAIHFTPSGGQIIISTTH----TSNEEVILRVRDTGVGMTNYELEKAMKPFG 761
           QI  N++ NA+ FT  GG + +S +      + ++V + V+DTG+GM    L++  KPF 
Sbjct: 554 QILFNLVGNALKFTEKGG-VQVSWSLYAGDDTEQQVRITVQDTGIGMEQEVLQELFKPFV 612

Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           Q  NS   + +G GLGL + K +V+   G   + S P +G+   +  PL
Sbjct: 613 QAENSYTRKYQGAGLGLSIVKRLVELMHGNISVKSVPGQGSTFYVDLPL 661



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 14/142 (9%), Positives = 46/142 (32%), Gaps = 10/142 (7%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            +     +   + E +  GI   + +GII+  N    K+ G   + ++        +   
Sbjct: 7   NLCSSEERYRKLFENSPLGIFQADDKGIIVDCNDNFVKIIGSSRQALIGLNIHSLPDTKL 66

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS----LTMHDI 561
            +     L+            +    S   +K   +++    +   +         + D+
Sbjct: 67  VTEFKKSLSG------EAGFYEDVYHSVSVDKATPVKVHFAPIFADNGRIQGCMGIVEDV 120

Query: 562 SEWKQEKNKLSHAKKIAEKESS 583
           ++ K ++ ++    +   + + 
Sbjct: 121 TQKKLDEEEIHKNARRLSEINH 142



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/418 (8%), Positives = 102/418 (24%), Gaps = 59/418 (14%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            +  D  G + + ++   K IG+    +IG+ +  +               L  +  +Y 
Sbjct: 26  IFQADDKGIIVDCNDNFVKIIGSSRQALIGLNIHSL---PDTKLVTEFKKSLSGEAGFY- 81

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
              ++     +   P+ +   PI++ N    G  G  IV              +  ++ S
Sbjct: 82  -EDVYHSVSVDKATPVKVHFAPIFADNGRIQGCMG--IVEDVTQKKLDEEEIHKNARRLS 138

Query: 206 HL--------HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD------ 251
            +         + +     +     D+        +      + S+ ++ A +D      
Sbjct: 139 EINHCLLGLGQDFETNVQRLTALCGDLLGAACALYNRLESGLLCSMGQWQAPEDYDPRDH 198

Query: 252 --------------------DVLKTEKYPLLTSEESSLPEQEDFHTI-------NLNQYT 284
                                 L   +Y            +                   
Sbjct: 199 PQGHICYDAIKQGQNETMVVTDLDQTEYARTDPNVRRYNLKTYLGHPVKCGEDFVGTLCV 258

Query: 285 KKQYFGTLQNN-----SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH- 338
             Q       +        +    +  +           +       ++CPI    +   
Sbjct: 259 VYQENRVPTEDDKKVIGIIASALSAEEDRRQAREDLVRSQESFKRLAEQCPISIMQFDSQ 318

Query: 339 GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398
           G L + N       ++ + + ++    L   +      +   I   +    +   +    
Sbjct: 319 GRLIFVN---EWHMQHFAGNAVDKQKLLGMHIQELPGLEKAGINEQVSQILNGEHLDVPE 375

Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
                ++       ++           +      I  +    +  ++++     +  +
Sbjct: 376 IFFP-EFIGGGCGWVSLRGVPLKEGD-KITGGILIREDLTAWKKTEQELVKARQEAEA 431


>gi|209965994|ref|YP_002298909.1| non-motile and phage-resistance protein [Rhodospirillum centenum
           SW]
 gi|209959460|gb|ACJ00097.1| non-motile and phage-resistance protein [Rhodospirillum centenum
           SW]
          Length = 693

 Score =  347 bits (889), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 123/404 (30%), Positives = 196/404 (48%), Gaps = 8/404 (1%)

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471
                                +E    +       +     +   + +   +GI I + E
Sbjct: 260 VQRRSRAHARMSATLRRANLELEARIQERDRVSAILTESERKYRDLYQNALEGIFITSLE 319

Query: 472 GIILSTNRAVSKLFGY--PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
           G  LS N A+ ++ GY    E ++            P+     L ++      Q  E   
Sbjct: 320 GRFLSVNPAMVRMLGYGSETELLVGLLDIGSQLYVDPARRGEMLRQMREKGTVQDFEAEM 379

Query: 530 LGSTKEEKLLSLRIIIKKLPFSSCYSLTMH----DISEWKQEKNKLSHAKKIAEKESSHK 585
               ++   + L +  + L  S+    +      D++E ++    +  A + +E  +  K
Sbjct: 380 --RRRDGSTVWLSLTARALRNSAGQITSFQGSCEDVTERRRAVEIMRVAMQQSEMANRAK 437

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
            +FLA +SHE+RTPL AIIGFSE+I  Q  GP+GNP Y EYA+ I  SG ++LD++N++L
Sbjct: 438 GEFLANMSHELRTPLNAIIGFSEIIAAQSLGPIGNPAYAEYASDIHDSGRVLLDVINEIL 497

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
           D+S IE+G+  L    V +   V  ++ L++  A +  + + T+    +P + AD  ++K
Sbjct: 498 DLSAIETGRRELKERTVDIGRVVRGSLRLIRERALQGGVTLETALDETLPLVRADETALK 557

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           QI  N+LSNA+ FTP GG+I      T +  ++L VRDTG+GM   +L  AM+PF Q+  
Sbjct: 558 QILSNLLSNAVKFTPPGGRITAGARETEDGRMLLTVRDTGIGMRPEDLAHAMEPFRQVEK 617

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
                  G GLGLPL KA+VD + G F + STP  GTL  +  P
Sbjct: 618 PLTRHAGGAGLGLPLVKALVDLHGGSFELESTPDAGTLASVWLP 661



 Score = 75.8 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 55/492 (11%), Positives = 121/492 (24%), Gaps = 62/492 (12%)

Query: 131 NHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVH----- 185
                 L  ++   G       +G+   +P     LP     R   G R  G        
Sbjct: 108 PRFAGTLLERHPHLGAFAWRLADGSTGVLPERQGPLP---DLRAGDGVRLSGDTLVFERT 164

Query: 186 -VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH-LRMKNKVSSL 243
                     A      +   H         +       +     P    L + ++   L
Sbjct: 165 VPADGGPASVAALVTARELSDHPLPGSLAFRATLLAPGTVAPPAGPNSLMLELPDQGWIL 224

Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303
                    V        L    +       +  +   +             +    E  
Sbjct: 225 RLEAPPVPPVSPAIPLATLCFALAVTVALAAYAQMVQRRSRAHARMSATLRRANLELEA- 283

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEI 362
             +    +SA   E E    +         F+ S  G     NP+ + +  Y S  ++  
Sbjct: 284 RIQERDRVSAILTESERKYRDLYQNALEGIFITSLEGRFLSVNPAMVRMLGYGSETEL-- 341

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
             GL  +     +      + +   R   T     A +   +    +++ ++       N
Sbjct: 342 LVGLLDIGSQLYVDPARRGEMLRQMREKGTVQDFEAEM---RRRDGSTVWLSLTARALRN 398

Query: 423 QFPENMPQNGIEPEDVDTRIN----KRKMEIEVMQLCS---ILEATS-------DGIAII 468
              +     G   +  + R      +  M+   M   +    L   S       + I   
Sbjct: 399 SAGQITSFQGSCEDVTERRRAVEIMRVAMQQSEMANRAKGEFLANMSHELRTPLNAIIGF 458

Query: 469 NREGIILST-------NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
           +    I++        N A ++                    ++  V+   + EIL L  
Sbjct: 459 SE---IIAAQSLGPIGNPAYAE--------------YASDIHDSGRVLLDVINEILDLSA 501

Query: 522 RQTLEKITLGSTKE-EKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
            +T  +     T +  +++   + + +             ++        L   +     
Sbjct: 502 IETGRRELKERTVDIGRVVRGSLRLIRERALQGG------VTLETALDETLPLVRADETA 555

Query: 581 ESSHKSDFLARV 592
                S+ L+  
Sbjct: 556 LKQILSNLLSNA 567



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/382 (8%), Positives = 90/382 (23%), Gaps = 26/382 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH---IGDLLKRQNT 142
            +     G    ++  + + +G  +   + + L D+   L++DP      +  + ++   
Sbjct: 313 IFITSLEGRFLSVNPAMVRMLGYGSETELLVGLLDIGSQLYVDPARRGEMLRQMREKGTV 372

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
              +  +   +G+   V + L A  + +   + + F+G               + +   +
Sbjct: 373 QDFEAEMRRRDGST--VWLSLTARALRNSAGQITSFQG--SCEDVTERRRAVEIMRVAMQ 428

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL- 261
           +    +  K    +    +              +  +        A+ +           
Sbjct: 429 QSEMANRAKGEFLANMSHELRTPLNAIIGFSEIIAAQSLGPIGNPAYAEYASDIHDSGRV 488

Query: 262 ---LTSEESSLPEQEDFHTINLNQ-----YTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
              + +E   L   E        +        +     ++  + +    L      +L  
Sbjct: 489 LLDVINEILDLSAIETGRRELKERTVDIGRVVRGSLRLIRERALQGGVTLETALDETLPL 548

Query: 314 YFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
              +   L     +       F    G +              +V D  I      L  A
Sbjct: 549 VRADETALKQILSNLLSNAVKFTPPGGRITAGARETEDGRMLLTVRDTGIGMRPEDLAHA 608

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW---------NRENSLAMTFIPFEKANQ 423
            +                   +     L  +           +     ++          
Sbjct: 609 MEPFRQVEKPLTRHAGGAGLGLPLVKALVDLHGGSFELESTPDAGTLASVWLPADRVRRD 668

Query: 424 FPENMPQNGIEPEDVDTRINKR 445
            P    + G       T    R
Sbjct: 669 TPPEASRTGGGKAGTATVCAAR 690


>gi|2765035|emb|CAA71030.1| sensory histidine protein kinase [Calothrix viguieri]
          Length = 744

 Score =  347 bits (889), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 107/415 (25%), Positives = 189/415 (45%), Gaps = 25/415 (6%)

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
           I  E   Q  E   Q      +        ++      L  +L+    GI   + EGI+ 
Sbjct: 328 IATELERQQTEAARQQAQYELERLVEQRTTELSKANELLKVLLDNVQAGIVACDAEGILT 387

Query: 476 STNRAVSKLFGYPVEDI----LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
             N+A  +  G P + +      K + ++L      +  + +    +L  +       + 
Sbjct: 388 LFNQAARQFHGLPEQALPPEEWAKHYDLYLPDGKTRMSKNEIPLFRALQEQTVKNVEMVI 447

Query: 532 STKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNKLSHAKKI---------- 577
           + K  K+ +L    + +  +        + MHDI+E K  + +     +           
Sbjct: 448 APKHGKVKTLLASGQAIVDNEGKKQGAVVVMHDITERKIAEAERIQLIRQQVQEQSARLK 507

Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
           AE+ +  K +FLA +SHE+RTPL  I+G+++++   R G L + +       I+R+  L 
Sbjct: 508 AEEANRLKDEFLAVLSHELRTPLNPILGWTKLL---RAGKLDSAKTDYALETIERNAKLQ 564

Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697
             ++ DLLD+S+I  GK++L+   V+L   +S AI  VQL A  K I I T F  N+ ++
Sbjct: 565 TQLIGDLLDVSRILQGKLSLNMAAVNLAPTISAAIETVQLAAQAKSIQIETVFDPNVGQV 624

Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757
           L D   ++Q+  N+LSNA+ FT +GG++ I      + +  ++V DTG G++   L    
Sbjct: 625 LGDSTRLQQVVWNLLSNAVKFTKNGGRVEIRLECVDS-QAEIKVSDTGKGISPDFLPHVF 683

Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK--GTLIEIIFPL 810
           + F Q   +   +  G GLGL + + +V+ + G  Y  S P +  G    +  PL
Sbjct: 684 ESFRQADATITRKFGGLGLGLAIVRHLVELHGGTIYAES-PGEDLGATFTVRLPL 737


>gi|327478670|gb|AEA81980.1| conserved hypothetical protein [Pseudomonas stutzeri DSM 4166]
          Length = 992

 Score =  347 bits (889), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 110/594 (18%), Positives = 219/594 (36%), Gaps = 37/594 (6%)

Query: 231 PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG 290
            P   +++   +L   +      L      L      S   +             +    
Sbjct: 422 EPQRLLEDAAQALVHVHPQDLPRLHRALLRL-AVHPGSGAVEFRIQHPQRGLLWAEGRAS 480

Query: 291 TLQNNSKES---FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG---NLFYA 344
             +                     +    + E+     V   P   +   +     + Y 
Sbjct: 481 AERLADGTVLWHGFVTEITELMEATRALQKSESRFRAMVGNLPGVVYRCRNDGRRRMSYL 540

Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
           +     LT Y + D +         L  P         P           +   R++ I 
Sbjct: 541 SEGIERLTGYPASDFVGDRVRSYGSLIHPDDQAQAEQSPA--------QDSFE-RIYRIT 591

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
                ++ +         +       +G   +  D  + K++ME     L  +++   D 
Sbjct: 592 NAEGRTVYVREKARVLRERDDPVGWCDGFIWDVTDQALAKQEMEERERYLSMLIDNVIDA 651

Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
           I II+  GII + N A  ++FGY  ++++ +  ++ + +   S  + YL         + 
Sbjct: 652 IIIIDGRGIIETFNHAAEQIFGYRSDEVIGRNLSMLMPEPDRSAHDGYLDHYTRRGTSRA 711

Query: 525 LE--KITLGSTKEEKLLSLRIIIKKL--PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
           LE  +      +  +  ++ + + ++       +   + DI+E K+ +            
Sbjct: 712 LEQNRELTALRRNGETFTIELRVSQISHHGERRFIGLVRDITERKRIE------------ 759

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
               KS+ ++ VSHE+RTPLT+I G   +I     G   +P  ++      ++   +  +
Sbjct: 760 --RMKSELVSIVSHELRTPLTSISGALGLIVGGALGE-PSPTMLQMLTIAHQNSLRLGRL 816

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILAD 700
           V+DLLD+ K+ +GKM L     SL   +  A    Q YA +  + ++      + +++AD
Sbjct: 817 VDDLLDMDKLVAGKMTLQLHGHSLVRQMQLATEANQGYAAKHGVYLQLEPLPTL-QLIAD 875

Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760
              ++Q+  N++SNA+ F+P GG + +         V + VRD G G+      +  + F
Sbjct: 876 DDRLQQVLANLISNAVKFSPEGGTVSLGAQQR-GAWVRIWVRDQGPGIAPEFHARIFQKF 934

Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
            Q  +S   +  GTGLGL ++K +++   G+    S P  G       PL   +
Sbjct: 935 SQADSSDTRQKGGTGLGLAISKELIEHMHGRIGFDSEPGHGACFWCELPLAPAA 988



 Score = 45.8 bits (107), Expect = 0.033,   Method: Composition-based stats.
 Identities = 24/270 (8%), Positives = 61/270 (22%), Gaps = 20/270 (7%)

Query: 70  SENTFVFDPIPRTVRFTWNIDAHGY--LKEISEELPKTIGNYAFKMIG---MRLCDVSDI 124
           SE+ F            +     G   +  +SE + +  G  A   +G        +   
Sbjct: 511 SESRFRAMVGNLPG-VVYRCRNDGRRRMSYLSEGIERLTGYPASDFVGDRVRSYGSLIHP 569

Query: 125 LHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIV 184
                        +       +            V +   A  +  R+       GF  +
Sbjct: 570 DDQ------AQAEQSPAQDSFERIYRITNAEGRTVYVREKARVLRERDDPVGWCDGF--I 621

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL--RMKNKVSS 242
                    +   +  ++  S L +       +   +  I +       +     ++V  
Sbjct: 622 WDVTDQALAKQEMEERERYLSMLIDNVIDAIIIIDGRGIIETFNHAAEQIFGYRSDEVIG 681

Query: 243 LTEYYAHKDDVLKTEKYPL----LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE 298
                   +         L          +L +  +   +  N  T        Q +   
Sbjct: 682 RNLSMLMPEPDRSAHDGYLDHYTRRGTSRALEQNRELTALRRNGETFTIELRVSQISHHG 741

Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
              ++      +     +  ++     V  
Sbjct: 742 ERRFIGLVRDITERKRIERMKSELVSIVSH 771



 Score = 43.9 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 18/140 (12%), Positives = 37/140 (26%), Gaps = 11/140 (7%)

Query: 98  ISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY-----GKTTLWPI 152
            +    +  G  + ++IG  L  +        ++   D   R+ T        + T    
Sbjct: 664 FNHAAEQIFGYRSDEVIGRNLSMLMPEPDRSAHDGYLDHYTRRGTSRALEQNRELTALRR 723

Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212
            G    + + ++ +  +   R        G+V           +   L    SH      
Sbjct: 724 NGETFTIELRVSQISHHGERRFI------GLVRDITERKRIERMKSELVSIVSHELRTPL 777

Query: 213 GHSSVEKEKYDIFSQQSPPP 232
              S         +   P P
Sbjct: 778 TSISGALGLIVGGALGEPSP 797



 Score = 37.7 bits (86), Expect = 8.4,   Method: Composition-based stats.
 Identities = 33/315 (10%), Positives = 77/315 (24%), Gaps = 47/315 (14%)

Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH 233
            F+ +R   +     ++         L     +        ++      ++         
Sbjct: 33  AFNDYRARDVAWHLEIETHGELQSLALQSAQLNQRRQADMVATALAGNAEVL-------- 84

Query: 234 LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293
            +M+   ++L +  +  D  L+  +  L  +   +    +    + L  +        L+
Sbjct: 85  RQMRLIDAALRDGRSLDDPRLERSRQRLRAALTPAWRSMQRHQALQLQLFWGDAGVTVLR 144

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC------------------------ 329
               E F        P L     +G       VD                          
Sbjct: 145 MQQPERFGDTQAAQRPMLQRVLRDGIEQFGLEVDALGASSRVIVPLRAVDRQDSEVIGAL 204

Query: 330 ----------PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
                     P      + G     N   L  ++      ++++ G   LL        +
Sbjct: 205 EVGYNVLPELPDLSAQLAAGLALIVNREALQASQTTPPSGVQLSEGSDWLLIGH-----S 259

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
           A + +   ++       S +   +      S  +  IP     Q   + P         D
Sbjct: 260 ATQVLHWAQAGVLPEPGSGKGSRLLDADGRSYILNQIPLHDEQQAEPSTPPLAAALAWRD 319

Query: 440 TRINKRKMEIEVMQL 454
               + +      +L
Sbjct: 320 ISAMQGEHLQAERRL 334


>gi|32477267|ref|NP_870261.1| histidine protein kinase homolog GacS [Rhodopirellula baltica SH 1]
 gi|32447818|emb|CAD77336.1| histidine protein kinase homolog GacS [Rhodopirellula baltica SH 1]
          Length = 1182

 Score =  347 bits (889), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 105/572 (18%), Positives = 202/572 (35%), Gaps = 51/572 (8%)

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
           L  +      +      + +  +LQ                      D+ E      +D+
Sbjct: 147 LQGRLRTRLKHQRTLQHRVHRRSLQIRRVNRALRNEVTRRQETQHRLDQSETTFQSLIDR 206

Query: 329 CPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
             +     S  G   YAN  F        VD I   G     L    +        + + 
Sbjct: 207 MHLQVARKSAEGVFTYANEQFCADIGMTPVDVI---GSTDAELFGDSIGAKYRADDLSVM 263

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
            + +                            + +Q  + +    I  +  +   N+  +
Sbjct: 264 STGQAVDKVEVHPGP----DGRIGFAQVFKAPEYDQNGQCVGVQIIFWDITEKHRNEIAL 319

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
                +  ++ +A  D + +I+ +  I+  N + S+L       ++ +P    +   +  
Sbjct: 320 RDSEARKRALFDAAGDAVLLIDDQRAIVEANPSASELLQAGGGRLVGRPLNDLISPVSNQ 379

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS--LRIIIKKLPFSSCYSLTMHDISEWK 565
                        L             +       + I    +  ++  ++ + D++  +
Sbjct: 380 W----------GGLPLAERHQLRLRRGDGSSFESEVSIHHIPVGDATGQAVIIRDVTLQR 429

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
                +  AK  AE+ +  K+ F+A +SHE+RTPL  I G ++++  Q            
Sbjct: 430 AAFEAMREAKAAAEQANRTKTQFMAGISHELRTPLGGIRGLTDLLGQQTLPTAA----RR 485

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           Y N I ++  L+ D++ D+LD + IE+G++ +   PV L E V +A   + +   +K + 
Sbjct: 486 YVNLIAQNTELLRDVIEDILDFAAIEAGRVAIDPVPVDLHEVVGDAFGCLAVRVADKPVR 545

Query: 686 IRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG--------------------- 723
           +  S A + PR ++AD + ++QI +N+  NAI FT  G                      
Sbjct: 546 LCLSIAPDTPRRVIADPKRIRQIVINLAGNAIKFTNRGEVSLRLGPIGDAPPSHGNDANS 605

Query: 724 -QIII--STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
            +I    ST  T      L V DTG+G+      +    F Q       +  GTGLGL +
Sbjct: 606 PEITTNGSTDDTPMAWFELTVSDTGIGIAPENQSRIFDAFEQADRGTNKQFGGTGLGLAI 665

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIE--IIFPL 810
           A+ +     G   + S    G+  +  +  PL
Sbjct: 666 ARGLAQRMGGDITVTSQVDLGSQFQCALALPL 697



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 35/369 (9%), Positives = 93/369 (25%), Gaps = 25/369 (6%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKRQNTWYGK 146
              A G     +E+    IG     +IG    ++  D +          ++         
Sbjct: 213 RKSAEGVFTYANEQFCADIGMTPVDVIGSTDAELFGDSIGAKYRADDLSVMSTGQAVDKV 272

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                 +G   +  +     P Y +N +  G +   I       +      +  + +   
Sbjct: 273 EVHPGPDGRIGFAQV--FKAPEYDQNGQCVGVQ--IIFWDITEKHRNEIALRDSEARKRA 328

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHL----------RMKNKVSSLTEYYAHKDDVLKT 256
           L +       +  ++  I         L          R  N + S          + + 
Sbjct: 329 LFDAAGDAVLLIDDQRAIVEANPSASELLQAGGGRLVGRPLNDLISPVSNQWGGLPLAER 388

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
            +  L   + SS   +   H I +   T +     +++ + +   + + R   + +   +
Sbjct: 389 HQLRLRRGDGSSFESEVSIHHIPVGDATGQAVI--IRDVTLQRAAFEAMREAKAAAEQAN 446

Query: 317 EGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
             +      +            G +          T   +          +T L    + 
Sbjct: 447 RTKTQFMAGISH----ELRTPLGGIRGLTDLLGQQTLPTAARRYVNLIAQNTELLRDVIE 502

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           D      +   R     +             +    +     +K  +   ++  +     
Sbjct: 503 DILDFAAIEAGRVAIDPVPVDLHEVV----GDAFGCLAVRVADKPVRLCLSIAPDTPRRV 558

Query: 437 DVDTRINKR 445
             D +  ++
Sbjct: 559 IADPKRIRQ 567


>gi|218778400|ref|YP_002429718.1| multi-sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218759784|gb|ACL02250.1| multi-sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 1153

 Score =  347 bits (889), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 89/376 (23%), Positives = 159/376 (42%), Gaps = 21/376 (5%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY--PVEDILRKPFTVFLE 502
             +     +  S+ E + +G+   +++G + S N A++++ GY  P +            
Sbjct: 245 AALRKAEAKYRSMFENSREGLFKTDQDGGLESANPALARILGYQSPRDLPDGATMLKQHL 304

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTM 558
                       E+        +     G  ++         + ++         Y   +
Sbjct: 305 IPEKEKRIQLYRELEEAGEA--VGVEVRGVRRDGSFFWGEFTVLRVEGEAESSRSYECIL 362

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            D +E K  +      K+ A   +  KS F+A +SHEIRTP+ AIIG S +         
Sbjct: 363 VDTTERKFREIA-EREKQAAVMANETKSLFVANMSHEIRTPMNAIIGLSSLALRTDLTS- 420

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
              R  +Y   I+ S   +L I+ND+LD+SKIE+G++ +      L++A++    +V + 
Sbjct: 421 ---RQRDYLTKIEYSAQSLLRIINDILDLSKIEAGRLTMEAIEFDLEDALNNLAKMVSVK 477

Query: 679 ANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-- 735
           A+EK + +      ++P  ++ D   + Q+ LN+  NA+ FT  G Q+II          
Sbjct: 478 ADEKGLDVIFDIGKDVPTGLIGDPTRLNQVLLNLTDNAVKFTEQG-QVIIKVRREREAAD 536

Query: 736 ----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
                +   V DTG+GM   +     + F Q   S   +  GTGLGL ++K +VD   G+
Sbjct: 537 VQGSTLRFSVIDTGIGMRAQQAPYLFQSFTQADASITRKHGGTGLGLTISKHIVDLMGGE 596

Query: 792 FYIFSTPAKGTLIEII 807
             + S    G+     
Sbjct: 597 ISVSSEFGVGSTFTFT 612



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/353 (11%), Positives = 89/353 (25%), Gaps = 31/353 (8%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI---GDLLKRQNT 142
            +  D  G L+  +  L + +G  + + +      +   L  +    I    +L +    
Sbjct: 265 LFKTDQDGGLESANPALARILGYQSPRDLPDGATMLKQHLIPEKEKRIQLYRELEEAGEA 324

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
              +      +G+  +               EF+  R  G    +R       L    ++
Sbjct: 325 VGVEVRGVRRDGSFFW--------------GEFTVLRVEGEAESSRSYECI--LVDTTER 368

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK---- 258
           KF  + E +K  + +  E   +F            N +  L+      D   +       
Sbjct: 369 KFREIAEREKQAAVMANETKSLFVANMSHEIRTPMNAIIGLSSLALRTDLTSRQRDYLTK 428

Query: 259 -YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
                 S    + +  D   I   + T +     L++      + +S +          +
Sbjct: 429 IEYSAQSLLRIINDILDLSKIEAGRLTMEAIEFDLEDALNNLAKMVSVKADEKGLDVIFD 488

Query: 318 GENLTPETVDKCPIP---FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
                P  +   P       +    N         ++ K +   +     G +       
Sbjct: 489 IGKDVPTGLIGDPTRLNQVLLNLTDNAVKFTEQGQVIIKVRREREAADVQGSTLRFSVID 548

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
                  +         T     A     + +    L +T           E 
Sbjct: 549 TGIGMRAQQAPYLFQSFTQ----ADASITRKHGGTGLGLTISKHIVDLMGGEI 597


>gi|154245571|ref|YP_001416529.1| PAS/PAC sensor signal transduction histidine kinase [Xanthobacter
           autotrophicus Py2]
 gi|154159656|gb|ABS66872.1| PAS/PAC sensor signal transduction histidine kinase [Xanthobacter
           autotrophicus Py2]
          Length = 770

 Score =  346 bits (888), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 136/693 (19%), Positives = 265/693 (38%), Gaps = 58/693 (8%)

Query: 162 DLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEK 221
           DL+ L + +     +   G  +  V     +          + +++ + +    +     
Sbjct: 75  DLSLLALATAEG-LTLRAGNSLARVPSALEESLPPRATESGRRAYVTDAQGRIIASAPRS 133

Query: 222 YDIFSQQS----PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHT 277
               +         P +    +   L   +     +           +   L   E    
Sbjct: 134 EAPANLADLIDPAQPLVIFAERAGVLEVPFGTGTALATVRNLSAPLGQIVFLQPTERALA 193

Query: 278 INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY---FDEGENLTPETVDKCPIPFF 334
              +  T      T          +  H            +D         +++     +
Sbjct: 194 SWSDSTTLTVTLFTTTGTVLLILGFSFHWQASRAREADAIYDTVRRRIDTALNRGRCGMW 253

Query: 335 VYSHGNLF-YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393
            +       Y + +   +   +  D++   G ++ L       D+  +  +    ++R  
Sbjct: 254 DWDMARGRMYWSDTMFEILGLERKDELVSFGEIAKL----VHPDDGDLYELAQELAERPG 309

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
                R+  ++  + + + +         Q  +     GI  +  + +    +     M+
Sbjct: 310 TPVD-RVFRMRTAKGDFVWLRMRAEVVQQQGEDGPHLIGIAMDVTEAQRMAERTVTADMR 368

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHY 512
           L   +E+ S+   + + +  ++  N     L   P E I    PF V        +    
Sbjct: 369 LRDAIESISEAFVLWDSQNRLVLCNSKFQSLHELPDEAIHAGTPFDVIASVGRHPITRTP 428

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572
           L      D  +   +         + L +    ++    + Y     DI+  K+ + +L 
Sbjct: 429 L---KPEDKPEEGSRAFEAQLSNGRWLKI---AERRTKDNGYVSVGTDITTMKRHEERLM 482

Query: 573 HAKKIAEK-----------------------------------ESSHKSDFLARVSHEIR 597
             +K                                        +  KS+FLA +SHE+R
Sbjct: 483 DNEKRLMALVADLRKSQQTLEHQAQQLAELAEKYSEERNKAEDANRAKSEFLANMSHELR 542

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TPL AIIGFSE++++  FGPLG+ +Y EY   I  SG  +LD++ND+LD+SKIE+G+M L
Sbjct: 543 TPLNAIIGFSEIMESGMFGPLGSEKYAEYCTDIKGSGTYLLDVINDILDMSKIEAGRMQL 602

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
             E ++LD+ +++A+ +  +  +EK I +  + A N+  I  D R++KQI LN+LSNA+ 
Sbjct: 603 EVEDLALDDIIADALRVTAVNGDEKNIAMTMAAAPNL-AIKGDRRALKQILLNLLSNAVK 661

Query: 718 FTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
           FTP GG I +          ++ + DTG+G+    L +  +PF Q+ +      +G+GLG
Sbjct: 662 FTPEGGNIAVKARIN-GAAAVIAIEDTGIGIAKDALARIGRPFEQVESQFTKTHKGSGLG 720

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           L +AK++V+ + G   I S   +GT + +  P+
Sbjct: 721 LAIAKSLVELHGGAMRIRSVEGRGTTVIVRLPV 753


>gi|88857165|ref|ZP_01131808.1| hypothetical protein PTD2_01356 [Pseudoalteromonas tunicata D2]
 gi|88820362|gb|EAR30174.1| hypothetical protein PTD2_01356 [Pseudoalteromonas tunicata D2]
          Length = 781

 Score =  346 bits (888), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 104/380 (27%), Positives = 176/380 (46%), Gaps = 14/380 (3%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           +++++   +  +IL   +D I I + +G IL  +   +++FGY  ++++    T  +  +
Sbjct: 272 KQLKMTQAEQNAILACLTDAIIICDAKGNILFFSEQATEMFGYSAKEMIGVNVTKLMIND 331

Query: 505 TPSVMNHYLTEILSLDLRQTL--EKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHD 560
                + Y+    +    + +   +  +   K      + ++IK+L   S   +   + D
Sbjct: 332 HAKHHHDYIKGYQASGTSKVIGKNRDLIAVKKSGDEFPISLVIKELANISKLTFVGIISD 391

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           IS  KQ + +L  AK  AE  +  KS FLA  SHEIRTP+  I G  ++++ +     G 
Sbjct: 392 ISHIKQREKELQDAKNSAESAALAKSAFLANTSHEIRTPMNGIYGILQLLECEPLTQNG- 450

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
                       S   ++ IVND+LD SKIE+GK+NL      +   ++   S + L   
Sbjct: 451 ---QNLLKQATYSTQALMTIVNDILDFSKIEAGKLNLEHTHFKVSALLAHLESDMSLQTK 507

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----- 735
           +K I ++            D   ++QI +NI+SNAI FT  GG I+IS            
Sbjct: 508 DKNITLKIHNTITHDDWYGDALRIRQILINIISNAIKFTQQGG-IVISCYCNQANNASIN 566

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
           +V   + DTG+GM+   L+K  + F Q  NS   R  GTGLG+ +  ++     GK  + 
Sbjct: 567 QVTFEITDTGIGMSKMALDKLFERFEQADNSTTRRFGGTGLGMSIVHSLTTLMEGKINVQ 626

Query: 796 STPAKGTLIEIIFPLYDTSH 815
           S    GT  +I+ PL     
Sbjct: 627 SEEGVGTKFQIMLPLKRAEA 646


>gi|153009989|ref|YP_001371204.1| multi-sensor signal transduction histidine kinase [Ochrobactrum
           anthropi ATCC 49188]
 gi|151561877|gb|ABS15375.1| multi-sensor signal transduction histidine kinase [Ochrobactrum
           anthropi ATCC 49188]
          Length = 784

 Score =  346 bits (888), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 139/666 (20%), Positives = 263/666 (39%), Gaps = 59/666 (8%)

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247
               + R+ G         + + +    ++     D+  +      +      +     +
Sbjct: 117 DTIAEFRSRGLSSSGMTLAVIDPQSSVVAISGPISDLSGK-----PVDTILTEAQPLFLF 171

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLN---------QYTKKQYFGTLQNNSKE 298
           A +  VLK            S P    +  I +          +             +  
Sbjct: 172 AERAGVLKVMLQGEPAFGALSKPMTLPYSVIAVEPESTIFAEWRRAVSLNVTLFAGTTGV 231

Query: 299 SFEYL-----SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLT 352
            F  L                  + +      + +     + +       Y + S   + 
Sbjct: 232 MFAILYAYFSQAARAREADDLSGQIQRRIDLALGRGRCGLWDWDMARGRIYWSRSMYEML 291

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
            Y++ D +   G ++ +++       +  +      +         R+  ++    + + 
Sbjct: 292 GYEAQDAVLPFGDVAAIINTEDGDLYSIAEQA----AAGDISHVD-RVFRMRHADGSWVW 346

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG 472
           M       +      +   GI  +  +     ++     M++   +E  S+   + +   
Sbjct: 347 MRVRAEIASEGD---LHLVGIAFDVSEQHRFAQQTAEADMRIREAIENISEAFILWDSNN 403

Query: 473 IILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-- 529
            ++  N   S+  G PV  +    P         P      +    +    QT E+    
Sbjct: 404 RLVMANSKFSEYAGLPVWTLKPGVPRNEVDAHTRPFTFERRMANEHNRAGGQTFERQLSD 463

Query: 530 -------LGSTKEEKLLSLRIIIKKL--------PFSSCYSLTMHDISEWKQEKNK---- 570
                     T++  L+S+   I +L                T+HD+S  ++ +      
Sbjct: 464 GRWLQVNERRTQDGGLVSIGTDITQLKLHQERLVDSERRLMATIHDLSIARKGERDRVRE 523

Query: 571 -------LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
                      K+ AE  +  KS+FLA +SHE+RTPL AIIGFSE+I+   FGPLG+ RY
Sbjct: 524 LSELARKYGQEKERAEAANRAKSEFLANMSHELRTPLNAIIGFSEMIQAGTFGPLGSDRY 583

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            EY N I  SGN +L+++ND+LD+SKIE+G  +L  E + L   ++E + ++ L A+EK 
Sbjct: 584 EEYINDIHTSGNFLLNVINDILDMSKIEAGHFSLDREQIDLCPLINETVRMISLQADEKN 643

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
           I + T     + ++ AD R++KQ+ +N+LSNA+ FT  GGQI +    T +  + + ++D
Sbjct: 644 IAVNTRIEEAM-QLYADRRAIKQVLINLLSNAVKFTSYGGQITVRARKTGSA-LFMTIQD 701

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TGVG+    ++K  +PF Q+ N       G+GLGL + +++ + + G   I ST   GT+
Sbjct: 702 TGVGIPKSAIKKIGQPFEQVENQFTKTHTGSGLGLAITRSLAELHGGWLRIRSTEGVGTV 761

Query: 804 IEIIFP 809
           + +  P
Sbjct: 762 VSVCIP 767



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 52/526 (9%), Positives = 138/526 (26%), Gaps = 47/526 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG--- 145
           ID    +  IS  +    G     ++     +   +        +  ++ +    +G   
Sbjct: 137 IDPQSSVVAISGPISDLSGKPVDTIL----TEAQPLFLFAERAGVLKVMLQGEPAFGALS 192

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRG-----FGIV-----HVNRVDNDPRA 195
           K    P     +     + A    + +   + F G     F I+        R       
Sbjct: 193 KPMTLPYSVIAVEPESTIFAEWRRAVSLNVTLFAGTTGVMFAILYAYFSQAARAREADDL 252

Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT-----EYYAHK 250
            G+   +    L   + G    +  +  I+  +S    L  + + + L           +
Sbjct: 253 SGQIQRRIDLALGRGRCGLWDWDMARGRIYWSRSMYEMLGYEAQDAVLPFGDVAAIINTE 312

Query: 251 DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG-TLQNNSKESFEYLSHRNHP 309
           D  L +        + S +         + +    +       + +              
Sbjct: 313 DGDLYSIAEQAAAGDISHVDRVFRMRHADGSWVWMRVRAEIASEGDLHLVGIAFDVSEQH 372

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
             +    E +    E ++     F ++  +  L  AN  F     Y  +    +  G+  
Sbjct: 373 RFAQQTAEADMRIREAIENISEAFILWDSNNRLVMANSKFSE---YAGLPVWTLKPGVPR 429

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
                        + +    +         +L   +W             +   +  ++ 
Sbjct: 430 NEVDAHTRPFTFERRMANEHNRAGGQTFERQLSDGRW------------LQVNERRTQDG 477

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
               I  +    ++++ ++     +L + +   S  IA       +   +    K     
Sbjct: 478 GLVSIGTDITQLKLHQERLVDSERRLMATIHDLS--IARKGERDRVRELSELARKYGQEK 535

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
                          N    +   L  I+     + ++  T G    ++       I  +
Sbjct: 536 ERAEAANRAKSEFLANMSHELRTPLNAII--GFSEMIQAGTFGPLGSDRY---EEYINDI 590

Query: 549 PFSSCYSL-TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
             S  + L  ++DI +  + +       +         ++ +  +S
Sbjct: 591 HTSGNFLLNVINDILDMSKIEAGHFSLDREQIDLCPLINETVRMIS 636



 Score = 41.9 bits (97), Expect = 0.41,   Method: Composition-based stats.
 Identities = 28/249 (11%), Positives = 61/249 (24%), Gaps = 13/249 (5%)

Query: 86  TWNID-AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN--HIGDLLKRQNT 142
            W+ D A G +   S  + + +G  A   + +   DV+ I++ +  +   I +     + 
Sbjct: 271 LWDWDMARGRI-YWSRSMYEMLGYEAQDAV-LPFGDVAAIINTEDGDLYSIAEQAAAGDI 328

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
            +             +V + + A      +    G     I       +         D 
Sbjct: 329 SHVDRVFRMRHADGSWVWMRVRAEIASEGDLHLVG-----IAFDVSEQHRFAQQTAEADM 383

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK--YP 260
           +     E       +      +    S          V +L       +    T    + 
Sbjct: 384 RIREAIENISEAFILWDSNNRLVMANSKFSEY-AGLPVWTLKPGVPRNEVDAHTRPFTFE 442

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
              + E +    + F     +    +      Q+    S      +         D    
Sbjct: 443 RRMANEHNRAGGQTFERQLSDGRWLQVNERRTQDGGLVSIGTDITQLKLHQERLVDSERR 502

Query: 321 LTPETVDKC 329
           L     D  
Sbjct: 503 LMATIHDLS 511


>gi|258406487|ref|YP_003199229.1| multi-sensor hybrid histidine kinase [Desulfohalobium retbaense DSM
           5692]
 gi|257798714|gb|ACV69651.1| multi-sensor hybrid histidine kinase [Desulfohalobium retbaense DSM
           5692]
          Length = 1316

 Score =  346 bits (888), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 127/799 (15%), Positives = 251/799 (31%), Gaps = 93/799 (11%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +   G  + ++    +T+G    + + M   D+    H     +    L +   +     
Sbjct: 144 VGPDGLFQFVNPAWEETLGYSQDEALQMFFEDIIAPEHRSHCRNRFQGLLQGREFRDIRV 203

Query: 149 -LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
            +    G  +    +    P   +N E    +G  I                  ++    
Sbjct: 204 PMLTKAGRIIQT--EAHLFPRL-QNGEVIATQG--IFQDITERLQAEKRELAAQQRLRDF 258

Query: 208 HEIKKGHSSVEKEK-----YDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
            ++                           +   +    S    + H +D     +    
Sbjct: 259 FQLAPAVIYRLDPDSWQVLDVTPYVSELLGYTIQETLAPSWWRDHLHPEDKHAAFEANAD 318

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES----FEYLSHRNHPSLSAYFDEG 318
                S+  +        +    +     +++N  +       +L+     +L     E 
Sbjct: 319 LFATGSVAHEYRIRHKKGHWVWVQDRIKLIRDNQGQPQEIIGAWLNISERRALEIQLQES 378

Query: 319 ENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDI----EIAGGLSTLLDA 372
           E       +      F+    +G +  ANP+      +     +         L+     
Sbjct: 379 EARYRNIFNNHHTVMFIIDPANGQIEDANPAAETFYGWDRATLLSMNVAEINTLTEREVQ 438

Query: 373 PKLSDNNAIK----PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK----ANQF 424
            ++ +    +         R+D +          +     N L        +     ++ 
Sbjct: 439 EEMQNARRQRRTYFEFQHRRADGSVRFVEVYSGPVHLYGRNLLYSIVHDATERVQARDEI 498

Query: 425 PENMPQNGIEPEDVDTRIN-KRKMEIEVMQLCSILE---ATSDGIAIINREGIILSTNRA 480
                        +   +    + +I    L + L+   ++   + I   EG +   N  
Sbjct: 499 WRQKNLLASINTILHDALYCDTEAKIAESGLEAALKLTGSSGGWVGIRTPEGKV---NTL 555

Query: 481 VSKLFGYPVEDILR-----------------------------KPFTVFLEQNTPSVMNH 511
             +  G                                     K             + +
Sbjct: 556 ALQWSGSEGTPHKGPHQLQGLHMQGLWGAVIQQGASLLTNAPQKHPRFEGLPENHIPLQN 615

Query: 512 YLT----------EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDI 561
           +L            +++L         T  +T E+  ++L   +++            ++
Sbjct: 616 FLGVPLQQGGVTIGLIALANASEGFTETDRTTAEDLSVALAEALQRKKADQALHAFNAEL 675

Query: 562 SEWKQEKN--------KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
            E  + +          L  AK  AE  +  KS FLA +SHEIRTP+ AI+G   +IK  
Sbjct: 676 EERVRARTTDLEKANTALEEAKDAAEVANRTKSAFLANMSHEIRTPMNAILGMLHLIKQT 735

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
                   +   Y + +  S   +L+I+ND+LD SKIESGK+ L      ++  +     
Sbjct: 736 HLSA----KQANYMDKVHTSTEALLNIINDILDFSKIESGKLQLEQTEFDIETEMRTVAE 791

Query: 674 LVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH- 731
           L+ L A +K I++      N P   + D   ++Q+ +N++ NAI FT  G  I ++    
Sbjct: 792 LLGLEAQQKGIVLNFDLDLNAPERFVGDAMRLRQVLINLVGNAIKFTEHG-HIQVTQRLT 850

Query: 732 ---TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
               +  E I  V DTG G+   + E   + F Q   S      GTGLGL ++K +V+  
Sbjct: 851 QWVEAQAECIFEVEDTGPGIAPGQQELLFQAFSQADASTTREFGGTGLGLAISKRLVEMM 910

Query: 789 MGKFYIFSTPAKGTLIEII 807
            G+  + STP +G+     
Sbjct: 911 GGEIGLQSTPGQGSRFTFR 929



 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 50/514 (9%), Positives = 122/514 (23%), Gaps = 35/514 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH-----IDPNNHIGDLLKRQNTW 143
           +D    +   +      +   A  + G +L D +         +  + H   +       
Sbjct: 27  LDHTLCIIAANTSAAALLQTSADLLPGQKLPDFAGQGQPWLAKLCAHLHRFPVFTDLELD 86

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
            G T    +   +   P  LA       +    G                          
Sbjct: 87  RGITANSRLFAGDTETPRLLAVGLDLPSSHPLPG-------RDTTDAEHRYQTLVTNAPL 139

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
                        V     +                + +            +     LL 
Sbjct: 140 LIQSVGPDGLFQFVNPAWEETLGYSQDEALQMFFEDIIA-----PEHRSHCRNRFQGLLQ 194

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL--SHRNHPSLSAYFDEGENL 321
             E                 T+   F  LQN    + + +                 +  
Sbjct: 195 GREFRDIRVPMLTKAGRIIQTEAHLFPRLQNGEVIATQGIFQDITERLQAEKRELAAQQR 254

Query: 322 TPETVDKCPIPFFVYSHG--NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
             +     P   +        +    P    L  Y   + +  +     L    K +   
Sbjct: 255 LRDFFQLAPAVIYRLDPDSWQVLDVTPYVSELLGYTIQETLAPSWWRDHLHPEDKHAAFE 314

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
           A   +    S        A  + I+  + + + +        +   +     G      +
Sbjct: 315 ANADLFATGS-------VAHEYRIRHKKGHWVWVQDRIKLIRDNQGQPQEIIGAWLNISE 367

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRKPFT 498
            R  + +++    +  +I       + II+   G I   N A    +G+    +     +
Sbjct: 368 RRALEIQLQESEARYRNIFNNHHTVMFIIDPANGQIEDANPAAETFYGWDRATL----LS 423

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE--KLLSLRIIIKKLPFSSCYSL 556
           + + +           E+ +   ++           +   + + +      L   +    
Sbjct: 424 MNVAEINTLTEREVQEEMQNARRQRRTYFEFQHRRADGSVRFVEVYSGPVHLYGRNLLYS 483

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
            +HD +E  Q ++++   K +    ++   D L 
Sbjct: 484 IVHDATERVQARDEIWRQKNLLASINTILHDALY 517



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/284 (13%), Positives = 71/284 (25%), Gaps = 29/284 (10%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
           PS     +           + P          +  AN S   L +  +            
Sbjct: 2   PSAPTPSERRLARHCAEASRAPFLVL-DHTLCIIAANTSAAALLQTSAD----------- 49

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
           LL   KL D        L +     + A      +  + E    +T      A       
Sbjct: 50  LLPGQKLPDFAGQGQPWLAK-----LCAHLHRFPVFTDLELDRGITANSRLFAGDTETPR 104

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
                        +  R       +  +++      I  +  +G+    N A  +  GY 
Sbjct: 105 LLAVGLDLPSSHPLPGRDTTDAEHRYQTLVTNAPLLIQSVGPDGLFQFVNPAWEETLGYS 164

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            ++ L+  F   +     S   +    +L     +  +      TK  +++     +   
Sbjct: 165 QDEALQMFFEDIIAPEHRSHCRNRFQGLLQGR--EFRDIRVPMLTKAGRIIQTEAHLFPR 222

Query: 549 PFSSCYSL---TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
             +           DI+E  Q +       K          DF 
Sbjct: 223 LQNGEVIATQGIFQDITERLQAE-------KRELAAQQRLRDFF 259


>gi|312887628|ref|ZP_07747221.1| PAS/PAC sensor hybrid histidine kinase [Mucilaginibacter paludis
           DSM 18603]
 gi|311299894|gb|EFQ76970.1| PAS/PAC sensor hybrid histidine kinase [Mucilaginibacter paludis
           DSM 18603]
          Length = 822

 Score =  346 bits (888), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 97/435 (22%), Positives = 182/435 (41%), Gaps = 26/435 (5%)

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459
           L+   +     L  +                     + +     +  +E    +  +I+E
Sbjct: 110 LNEAHFKGALILYWSAAFEVDDLIAEFLNHAWVALRDVICLMQTQYDIEELSTRFNAIME 169

Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL 519
            T  GI  ++  G     N+  S++ G   +    +P  + +             EI   
Sbjct: 170 TTPQGIVFVDDSGKGAWVNKQASQILGVNND--KNEPLAISMAMTRLRSAAINQEEIQRE 227

Query: 520 DL-------RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS-------EWK 565
            +       +  L+   +       +LS+                  DI+       +  
Sbjct: 228 GMKLFSSPNQSLLDWRWIFGDPVSLVLSVSCTPVVSENIRGRLWAFTDITSLHITNSQLS 287

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           +   +L   +KIA++++  KS FLA +SHEIRTP+  +IG + ++ +            +
Sbjct: 288 ELNIELDEKRKIADEQNQAKSAFLANMSHEIRTPMNGVIGMTSLLISTSL----TDEQQD 343

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           Y   I  SG  +L ++ND+LD SKIESGKM L  +P SL   + E   L+ + A+EK + 
Sbjct: 344 YVETIRISGETLLSLINDILDFSKIESGKMELETQPFSLTSVIEETYDLLTVKADEKGLD 403

Query: 686 IRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILR 740
           +      ++P  I+ D+  ++QI +N++SN I FT  G +I+IS            +   
Sbjct: 404 LLYLIDADVPSEIIGDVTRLRQILVNLVSNGIKFTEKG-EILISIELLEKAGSIYTLQFS 462

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V+D+G+G+   +  +  + F Q+ +S   +  GTGLGL +++ +V+A  G     S   +
Sbjct: 463 VKDSGIGIPQDKFHRLFQSFSQVDSSTTRKHGGTGLGLAISQRLVEAMQGSIRAESKYGE 522

Query: 801 GTLIEIIFPLYDTSH 815
           G+       +  ++ 
Sbjct: 523 GSCFIFTIKVEASAQ 537


>gi|182678613|ref|YP_001832759.1| multi-sensor signal transduction histidine kinase [Beijerinckia
           indica subsp. indica ATCC 9039]
 gi|182634496|gb|ACB95270.1| multi-sensor signal transduction histidine kinase [Beijerinckia
           indica subsp. indica ATCC 9039]
          Length = 583

 Score =  346 bits (888), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 104/398 (26%), Positives = 184/398 (46%), Gaps = 22/398 (5%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           ++  ++       L  ++    D + + +R G   + NR      G P +D++ +     
Sbjct: 155 KVEAQRARRRNPDLLPLIHQLGDFVVVHDRSGTAWALNRHFEHHLGLPPDDLMGRGLFDH 214

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL-----SLRIIIKKLPFSSC-- 553
           +           + +    +    +     G  ++   +        + I +        
Sbjct: 215 VHVLDRPAFLRAIADAAGGEGASNITIRLRGRGEDLSSVEPCFRWFDVCINRFENGHAKK 274

Query: 554 -----------YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
                            DIS  ++ + +L  A+  AE  +  K  FLA +SHE+RTPL A
Sbjct: 275 REEAEADDQAMIIGVYRDISAMRRVEQELDAARVAAETANQAKDRFLANMSHELRTPLNA 334

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           IIGFSE++ + +  P    +  EYA  I  SG  +L +VN +LD+SKI SG   L  +P+
Sbjct: 335 IIGFSEMLADPQLCPQDPLKQREYAAIIHSSGEHLLHVVNSILDMSKIHSGTFPLQPQPI 394

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
            L   ++   ++++  A  K I +    A+    I+AD ++ KQI LN+LSNA+ FTP  
Sbjct: 395 VLAPLIASCCAMLRPQAEAKEIELVQIHADPWDEIVADQQACKQILLNLLSNAVKFTPRR 454

Query: 723 GQIIISTTHTSN--EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
           G++ I+     +  +++ + V+DTG+G++  +L +  +PF Q    Q+   EGTGLGL +
Sbjct: 455 GRVTIAVDCVVDCLDDIQIAVQDTGIGISADDLTRLGEPFFQAMVRQERPHEGTGLGLSI 514

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
            + +V+ + G   I S P +GT + +  P      P D
Sbjct: 515 VRGLVELHGGTLLIESEPDQGTSMIVRLP--REGRPQD 550


>gi|220908645|ref|YP_002483956.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219865256|gb|ACL45595.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 796

 Score =  346 bits (888), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 109/559 (19%), Positives = 201/559 (35%), Gaps = 63/559 (11%)

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLT 352
                    +  R   +        +      +      F+V        Y N  +  + 
Sbjct: 118 RRIALRHAEIMRRRSEAAQEEVQATKQHLERVLCSIHDGFYVLDRHWRYTYVNDRYCEMA 177

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
             +    +     L  L         + +    L R+    I          W R     
Sbjct: 178 GMQREAILGEN--LWQLFPD----GVDTLFDHHLQRAIDKQIPLQFEYFYGAWQRWYEHR 231

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII---- 468
           +   P                  E  D +  +  +     +     E + D   I+    
Sbjct: 232 VYPSPD----------GITVFVNEITDHKQVQVALRQSQERFRISQELSLDAFTILNSVR 281

Query: 469 NREGIIL-----STNRAVSKLFGYPVEDILRKPFTVFLEQNT-PSVMNHYLTEILSLDLR 522
           ++ G I+       N   +++  Y V+ ++ +     L  N   S +      ++     
Sbjct: 282 DQTGTIVDFVWIYANPKAAEILQYSVDQLIGQRLLDLLPGNQTNSDLFDRYVRVVETGEP 341

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE- 581
             +E             ++ + +         ++   DI++ KQ + +     K A+   
Sbjct: 342 HDIELAYNSEGISGWFRNMAVKL-----EDGVAIFFSDITDRKQAEAERERLLKEAQAAR 396

Query: 582 ------SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
                 +  K +FLA +SHE+R+PL  I+G+++++++QRF      +  E    I+R+  
Sbjct: 397 AEAEAANRIKDEFLAVLSHELRSPLNPILGWTQLMQSQRFDA---AKTTEALAAIERNAK 453

Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695
           L   +++DLLD++KI  GKM+L+  PV+L   +  AI +V   A  K I + +  A  I 
Sbjct: 454 LQTQLIDDLLDVAKILRGKMSLNRVPVNLMFVIKAAIDIVMTAAVAKSIQLHSELAQ-IG 512

Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-------------------E 736
            +  D   ++Q+  N+LSNAI FTP+GG++ I       +                    
Sbjct: 513 AVYGDAGRLQQVIWNLLSNAIKFTPAGGRVEIRLKRVEQQLYQPQPNSLPSIHPLPTTPY 572

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
             + V DTG G+    L    + F Q   S   +  G GLGL + + +V+A+ G     S
Sbjct: 573 AHITVSDTGKGINPNFLPYIFESFHQEDASITRKYGGLGLGLAIVRYLVEAHGGTVTAES 632

Query: 797 -TPAKGTLIEIIFPLYDTS 814
               +G    +  PL D  
Sbjct: 633 PGEGQGATFTVCLPLLDAE 651



 Score = 42.3 bits (98), Expect = 0.30,   Method: Composition-based stats.
 Identities = 16/245 (6%), Positives = 61/245 (24%), Gaps = 27/245 (11%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP--NNHIGDLLKRQNTWYGK 146
           +D H     +++   +  G     ++G  L  +     +D   ++H+   + +Q     +
Sbjct: 160 LDRHWRYTYVNDRYCEMAGMQREAILGENLWQL-FPDGVDTLFDHHLQRAIDKQIPLQFE 218

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                          +    P         G   F  V+        +   ++  ++F  
Sbjct: 219 YFY-----GAWQRWYEHRVYPSPD------GITVF--VNEITDHKQVQVALRQSQERFRI 265

Query: 207 LHEIKKGHSSVE-----------KEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255
             E+     ++               +   + ++        +++           +   
Sbjct: 266 SQELSLDAFTILNSVRDQTGTIVDFVWIYANPKAAEILQYSVDQLIGQRLLDLLPGNQTN 325

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
           ++ +        +    +     N    +       ++     +  +    +     A  
Sbjct: 326 SDLFDRYVRVVETGEPHDIELAYNSEGISGWFRNMAVKLEDGVAIFFSDITDRKQAEAER 385

Query: 316 DEGEN 320
           +    
Sbjct: 386 ERLLK 390



 Score = 41.2 bits (95), Expect = 0.77,   Method: Composition-based stats.
 Identities = 25/255 (9%), Positives = 67/255 (26%), Gaps = 21/255 (8%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSD--ILHIDPNNHIGDLLKRQNTWYGKTTL 149
                  + +  + +     ++IG RL D+      + D  +    +++           
Sbjct: 289 DFVWIYANPKAAEILQYSVDQLIGQRLLDLLPGNQTNSDLFDRYVRVVETGEPH-DIELA 347

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
           +  EG + +              R  +     G+        D +      ++       
Sbjct: 348 YNSEGISGWF-------------RNMAVKLEDGVAIFFSDITDRKQAEAERERLLKEAQA 394

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
            +    +  + K +  +  S      +   +       + + D  KT +        + L
Sbjct: 395 ARAEAEAANRIKDEFLAVLSHELRSPLNPILGWTQLMQSQRFDAAKTTEALAAIERNAKL 454

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
             Q     +++ +  + +   +L          +       ++A   +   L  E     
Sbjct: 455 QTQLIDDLLDVAKILRGKM--SLNRVPVNLMFVIKAAIDIVMTAAVAKSIQLHSEL---A 509

Query: 330 PIPFFVYSHGNLFYA 344
            I       G L   
Sbjct: 510 QIGAVYGDAGRLQQV 524


>gi|218887461|ref|YP_002436782.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
            'Miyazaki F']
 gi|218758415|gb|ACL09314.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
            'Miyazaki F']
          Length = 1499

 Score =  346 bits (888), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 119/696 (17%), Positives = 235/696 (33%), Gaps = 59/696 (8%)

Query: 173  REFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP 232
            R   G +G+G     RV   P  L       F  +  +++   ++   +  +        
Sbjct: 612  RTLGGRQGWGQFRC-RVARGPDRLPLHAQGTFQDITSLREAELALRDSEARL---NEAQF 667

Query: 233  HLRMKNKVSSLTEYYAHKDDVLKT------EKYPLLTSEESSLPEQEDFHTINLNQYTKK 286
              RM +   +L +  A     L           PL+  E       E          T  
Sbjct: 668  IARMGSYSVNLRDGEAFWSPGLFRLLDLDPHDGPLVPGEAFRRHAPEAAPWFEAFLATPA 727

Query: 287  QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD------------------- 327
                + +  S         R    L      G +  PE +                    
Sbjct: 728  DRPESTERRSFPYITATGRRGFGRLHMMARHGADGLPEHIRGTFQDITPLHEAEQALRES 787

Query: 328  --KCPIPFFVYSHGNL---FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
              +      +   G+       + +        ++ +++ +           +     + 
Sbjct: 788  EARLQEAQQIARMGSFDLDLVHDRADYWSPGLYALLELDPSQPPPPPSRGSAIHSPERVG 847

Query: 383  PVMLYRSDRTCIAASARLHTIQW--NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
                 R+ R  +  +    T+ +                +       +   G   +    
Sbjct: 848  WFDELRTSRVPVPETVHSETVPYFTASGRKGVGHMQAVVQRGPDGTPVRMRGTFQDITRL 907

Query: 441  RINKRKMEIEVMQLCSILEA-TSDGIAIIN---REGIILSTNRAVSKLFGYPVEDILRKP 496
               ++ +     +L   LEA    GI   +      +    +  +  L        L +P
Sbjct: 908  HQTEQALRDSEARL---LEAQLIAGIGSFDFDIANDVATYWSTGLYALLEVEPGTPLPRP 964

Query: 497  FT-VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL--SLRIIIKKLPFSSC 553
                 +     +     +    + +            T + + +   ++ ++++ P    
Sbjct: 965  LEGCHIYAPDYAAQFERMITEPADEPESVFWDNIPLRTAKGRRMMGQMKAVVQRGPDGRP 1024

Query: 554  YSLT--MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
                    DIS   + +  L  AK+ AE  +  KS F+A +SHE+RTPL+ I+G  +V  
Sbjct: 1025 VRARGAFQDISRLYEAEQALQRAKEEAESANELKSQFVANISHEMRTPLSGILGIVDVAL 1084

Query: 612  NQRFG---PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
            ++      P  +     Y + I      +L ++NDLLD S++E+G++ L      L  AV
Sbjct: 1085 SRLNDTALPAHDNEQGHYLSMIRNVSEGLLHVINDLLDFSRMEAGRLGLDQVEYDLRAAV 1144

Query: 669  SEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSG-GQII 726
            S+A++ + + A  K + +      ++P R+  D   ++QI +N+  NA+ FT +  G + 
Sbjct: 1145 SDALAPLAVQAERKGLSLTVHIDADVPARLQGDPLRLRQILVNLAGNAVKFTDTDTGSVH 1204

Query: 727  ISTTH-----TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
            +              +   V+DTG G+T  +L    + F Q   S   R  G+GLGL ++
Sbjct: 1205 VDVRRSAQCPRPGGCLRFTVQDTGPGITADKLPLLFESFSQADGSHTRRHSGSGLGLAIS 1264

Query: 782  KAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
            + +V    G   + STP +G+      P+ D   P 
Sbjct: 1265 RHIVRLQGGDIGVNSTPGQGSRFWFTLPI-DKDAPQ 1299



 Score = 67.7 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 35/410 (8%), Positives = 96/410 (23%), Gaps = 25/410 (6%)

Query: 190 DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKY---DIFSQQSPPPHLRMKNKVSSLTEY 246
             +     +R + ++  L E   G + +  +      +         L  + ++      
Sbjct: 396 RLEAETALRRSEARYRTLAENYPGGAIMLFDGDMRCLLADGLGLAGLLAPRQRIEGAIPS 455

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY--LS 304
                 V      P     + +L   E   T+ + +   +     L  + +       +S
Sbjct: 456 DVLPPQVAL----PFEEQLQLALAGTEVTFTMAVGERIHEVRLRPLHEDRETGMPARCMS 511

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEI-- 362
                +           +     +      +   G+      +   +      + +    
Sbjct: 512 VLQDITQREAARMALRHSEA---RLQEAQQIARMGSFELHMDTGAFVWSAGLYEMLGHDP 568

Query: 363 ---AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
                  + +       + +     +   SD        R+   +          F    
Sbjct: 569 ALPPPPPAEVFAIHAPEELDWYHEHVAIMSDEPVTELQ-RVFPYRTLGGRQGWGQFRCRV 627

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTN 478
                   +   G   +    R  +  +     +L         G   +N R+G     +
Sbjct: 628 ARGPDRLPLHAQGTFQDITSLREAELALRDSEARLNEAQFIARMGSYSVNLRDGE-AFWS 686

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSV-MNHYLTEILSLDLRQTLEKITLGSTKEEK 537
             + +L      D    P   F      +           +     T  +     T   +
Sbjct: 687 PGLFRLLDLDPHDGPLVPGEAFRRHAPEAAPWFEAFLATPADRPESTERRSFPYITATGR 746

Query: 538 LLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
               R+ +     +         T  DI+   + +  L  ++   ++   
Sbjct: 747 RGFGRLHMMARHGADGLPEHIRGTFQDITPLHEAEQALRESEARLQEAQQ 796


>gi|193214405|ref|YP_001995604.1| multi-sensor hybrid histidine kinase [Chloroherpeton thalassium ATCC
            35110]
 gi|193087882|gb|ACF13157.1| multi-sensor hybrid histidine kinase [Chloroherpeton thalassium ATCC
            35110]
          Length = 1487

 Score =  346 bits (888), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 110/758 (14%), Positives = 239/758 (31%), Gaps = 70/758 (9%)

Query: 99   SEELPKTIGNYAFK---MIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGT 155
            +E   + IG    +   +       +     +  +  +     ++ T   +  +     T
Sbjct: 630  NERWAEIIGYTLEELQPITSQTRRSLVHPEDLSHSAILLKEHFKKRTSQYECEVRMKHKT 689

Query: 156  NLYVPIDLAALPI-YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214
              +V +      + +  NR     R  G +    +        ++ +     + +     
Sbjct: 690  GEWVWVLERGKVMEWDENR--LPIRMAGTLLDISLRKLTEETLRKNEHFLQTITDCTPSF 747

Query: 215  SSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA---------HKDDVLKTEKYPLLTSE 265
              +           +P             T   A           D    ++  P L ++
Sbjct: 748  IYIYDLIEGRNFWVNPTHQQIFGEIFYKDTSTLAFHDIMERMHPDDKSKMSKCIPSLQNK 807

Query: 266  ESSLPEQEDFHTINLNQ--YTKKQYFGTLQNNSKE-----SFEYLSHRNHPSLSAYFDEG 318
                  + +F  I+ +   +         + N K          +             E 
Sbjct: 808  PDGEIFEVEFRMIDDDGVCHWFDDKVSVFERNEKGEITKIIGAGIDVSARKRAETAQQES 867

Query: 319  ENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
                   ++  P+  + ++     + +  +   +  +         G+   L+A    D 
Sbjct: 868  RAQLLSVLNNSPLQIWAFNGEEYLFLSEEWYRYSGQQRT----PHPGIDIWLEAVPTEDL 923

Query: 379  NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
                 V          +A      ++                 N   E     G   +  
Sbjct: 924  GRAGAVWQKAW--AEKSAHDNFFRLRNFNGEYRYFQCRAVPIFNHDGEFQYFIGYNVDIS 981

Query: 439  DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
            D    + ++     +   ++E +   + I +  G I   N   +KL GY  E++L K   
Sbjct: 982  DRIRAEEELR----KFSKVVEQSPSCVLITDLNGNIEYVNPFFTKLTGYSAEEVLGKNPK 1037

Query: 499  VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS--- 555
            +         +   L + ++               K  +L    + I  L     Y    
Sbjct: 1038 ILKSGEMNETVYDTLWKTITAG--GIWNGELHNQKKNGELFWEEVSICPLFDEEGYITHY 1095

Query: 556  -LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                 DI+  K+ + +L  ++K+              V+H+    LT I+  SE+   + 
Sbjct: 1096 FAVKQDITSKKKIEEQLRQSQKM-----EAIGQLAGGVAHDFNNILTVILANSEIALAKL 1150

Query: 615  FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                  P   +    + ++ N    +   LL  S+    K  L  + + L++ +     +
Sbjct: 1151 ---KDQPSAQDNIQQVKKAANRAASLTRQLLAFSR----KQILEPKILDLNDLIQNLQKM 1203

Query: 675  VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT---- 730
            +      + I +   +A N+ +I AD   ++Q+ +N+  NA    PSGG +II T     
Sbjct: 1204 L-ARLIGEDISLIIKYAPNLKQIKADPGQIEQVIVNLAVNARDAMPSGGNLIIETENAHV 1262

Query: 731  ----------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
                         +E V++ + DTG+GM    L++  +PF         + +GTGLGL  
Sbjct: 1263 DESFFKHHNCLDHSEFVLMTITDTGLGMDKATLKRIFEPFFTTKG----QSKGTGLGLAT 1318

Query: 781  AKAMVDANMGKFYIFSTPAKGTLIEIIFP-LYDTSHPH 817
               ++  + G   ++S P  GT+ ++  P + + + P 
Sbjct: 1319 VYGIIRQSGGLIQVYSEPEMGTVFKVYLPAISEKTKPE 1356



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 62/523 (11%), Positives = 138/523 (26%), Gaps = 44/523 (8%)

Query: 89   IDAHGYLKEISEELPK-------TIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN 141
            +DA+  +  ++  +          +G   ++       D S      P+      L+   
Sbjct: 492  LDANLNVIRVNRSMENRHANQMPLVGKKCYEA----YRDRSTPC---PHCPTMKALQTGK 544

Query: 142  TWYGKTTLWP--IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199
                 T   P    G      I+L A PI S +   +G   +  +    +          
Sbjct: 545  PHTD-TVQVPHNKIGETGPSWIELRAFPIKSDDGNITGVIEY--IKDITLQKQIEEQHLI 601

Query: 200  LDKKFSHLH----------EIKKGHSSVEKEKYDIFS--QQSPPPHLRMKNKVSSLTEYY 247
             +++ +              +        +   +I     +   P      +     E  
Sbjct: 602  SEERLNLAVLGAGVGLWDWHVTSDELITNERWAEIIGYTLEELQPITSQTRRSLVHPEDL 661

Query: 248  AHKDDVLKTEKYPLLTSEESSLPE-QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
            +H   +LK       +  E  +    +    + + +  K   +   +   + +   L   
Sbjct: 662  SHSAILLKEHFKKRTSQYECEVRMKHKTGEWVWVLERGKVMEWDENRLPIRMAGTLLDIS 721

Query: 307  NHPSLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTK---YKSVDDIE 361
                      + E+      D  P   ++Y    G  F+ NP+   +     YK    + 
Sbjct: 722  LRKLTEETLRKNEHFLQTITDCTPSFIYIYDLIEGRNFWVNPTHQQIFGEIFYKDTSTLA 781

Query: 362  IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                +  +    K S  +   P +  + D        R+  I  +         +   + 
Sbjct: 782  FHDIMERMHPDDK-SKMSKCIPSLQNKPDGEIFEVEFRM--IDDDGVCHWFDDKVSVFER 838

Query: 422  NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
            N+  E     G   +    +  +   +    QL S+L  +   I   N E   L  +   
Sbjct: 839  NEKGEITKIIGAGIDVSARKRAETAQQESRAQLLSVLNNSPLQIWAFNGE-EYLFLSEEW 897

Query: 482  SKLFGYPVEDILRKPFT-VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
             +  G               +             +  +                E +   
Sbjct: 898  YRYSGQQRTPHPGIDIWLEAVPTEDLGRAGAVWQKAWAEKSAHDNFFRLRNFNGEYRYFQ 957

Query: 541  LRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKE 581
             R +           +     DIS+  + + +L    K+ E+ 
Sbjct: 958  CRAVPIFNHDGEFQYFIGYNVDISDRIRAEEELRKFSKVVEQS 1000



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 58/546 (10%), Positives = 131/546 (23%), Gaps = 72/546 (13%)

Query: 90  DAHGYLKEISEELPKTIGNY-AFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           D HG L E +++  +  G     ++   RL D    +  +        LK++   + + +
Sbjct: 209 DVHGALLEANQKAIEMFGYENEAEIKTRRLIDHHPSIENEFLESTCAALKKEGLVHLEIS 268

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +G     P +++A  I    +++  +    IV          A        +  L 
Sbjct: 269 ALRKDG--AMFPAEISATLIKIDEKKYIQW----IVRDLVAKKQADAALLENAAHYQALF 322

Query: 209 EIKKGHSSVEK--EKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
           E        E   E  + F   +      +   +    E       ++K           
Sbjct: 323 ENSPIPLWEEDCSELVEYFRHLTALGISDIPTYLEENPEAVYQSISLVKIVDMNRAALAL 382

Query: 267 SSLPEQEDF----------------------------------------HTINLNQYTKK 286
                +E                                                  +  
Sbjct: 383 HRAASKEILTPVFPSILVNTSIEAIKEILISIAQKKPKSNIDVKITTLDGEDKEILLSWD 442

Query: 287 QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYAN 345
              G  Q   +     +               E    +  +       V     N+   N
Sbjct: 443 TVPGYEQTLKRVFVSTIDITPLKQAQTALQTQERFLDDVFNSIQDGISVLDANLNVIRVN 502

Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405
            S     ++ +   +                  +      L              + I  
Sbjct: 503 RSMEN--RHANQMPLVGKKCYEA-YRDRSTPCPHCPTMKALQTGKPHTDTVQVPHNKIGE 559

Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465
              + + +   P +  +             +    +  + +  I   +L   +     G+
Sbjct: 560 TGPSWIELRAFPIKSDD--GNITGVIEYIKDITLQKQIEEQHLISEERLNLAVLGAGVGL 617

Query: 466 AIINREGIILS----TNRAVSKLFGYPVEDILR---KPFTVFLEQNTPSVMNHYLTEILS 518
                +  + S    TN   +++ GY +E++     +     +     S     L E   
Sbjct: 618 W----DWHVTSDELITNERWAEIIGYTLEELQPITSQTRRSLVHPEDLSHSAILLKEHFK 673

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-----CYSLTMHDISEWKQEKNKLSH 573
               Q  E       K  + + +    K + +         + T+ DIS  K  +  L  
Sbjct: 674 KRTSQ-YECEVRMKHKTGEWVWVLERGKVMEWDENRLPIRMAGTLLDISLRKLTEETLRK 732

Query: 574 AKKIAE 579
            +   +
Sbjct: 733 NEHFLQ 738



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 15/184 (8%), Positives = 47/184 (25%), Gaps = 6/184 (3%)

Query: 403 IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
           I         +                      +    +  +  ++ +   L  +  +  
Sbjct: 427 ITTLDGEDKEILLSWDTVPGYEQTLKRVFVSTIDITPLKQAQTALQTQERFLDDVFNSIQ 486

Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522
           DGI++++    ++  NR++          ++ K         +    +    + L     
Sbjct: 487 DGISVLDANLNVIRVNRSMENR-HANQMPLVGKKCYEAYRDRSTPCPHCPTMKALQTGKP 545

Query: 523 QTLEKIT-LGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKI 577
            T           E     + +    +             + DI+  KQ + +   +++ 
Sbjct: 546 HTDTVQVPHNKIGETGPSWIELRAFPIKSDDGNITGVIEYIKDITLQKQIEEQHLISEER 605

Query: 578 AEKE 581
               
Sbjct: 606 LNLA 609



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/160 (11%), Positives = 46/160 (28%), Gaps = 6/160 (3%)

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
             +          ++      + M+    +  S+   ++D I I +  G +L  N+   +
Sbjct: 164 AGDIGFALYSIEMELKATQATKAMKEREEKYRSLFHFSTDAIVIYDVHGALLEANQKAIE 223

Query: 484 LFGYPVE-DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS-- 540
           +FGY  E +I  +             +      +        +        K+  +    
Sbjct: 224 MFGYENEAEIKTRRLIDHHPSIENEFLESTCAALKKEG---LVHLEISALRKDGAMFPAE 280

Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
           +   + K+         + D+   KQ    L       + 
Sbjct: 281 ISATLIKIDEKKYIQWIVRDLVAKKQADAALLENAAHYQA 320



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 12/114 (10%), Positives = 37/114 (32%), Gaps = 5/114 (4%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKRQNTWYGKT 147
             D +G ++ ++    K  G  A +++G     + S  ++    + +   +     W G+ 
Sbjct: 1007 TDLNGNIEYVNPFFTKLTGYSAEEVLGKNPKILKSGEMNETVYDTLWKTITAGGIWNGEL 1066

Query: 148  TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
                  G       +++  P++      + +  F +              ++  
Sbjct: 1067 HNQKKNGELF--WEEVSICPLFDEEGYITHY--FAVKQDITSKKKIEEQLRQSQ 1116


>gi|39656325|gb|AAR29885.1| putative histidine kinase HHK6p [Cochliobolus heterostrophus]
          Length = 1364

 Score =  346 bits (888), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 104/535 (19%), Positives = 201/535 (37%), Gaps = 52/535 (9%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
             ++   ++ E       +  P+  +  +  G   + +  +   T       +     L 
Sbjct: 446 QKIAEQIEQNEKQFEYITNFMPVMVWTTTPDGMHDWFSKRWYDYTGLTVDKSLGEGWRLP 505

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
                  +      +                R             M        +     
Sbjct: 506 --FHPDDMH--ATAERWFHSLKTGDEYNTEYRCQRF---DGQWRWMLGRAVPFYDDAGRI 558

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII------LSTNRAV 481
           +   G   +  D  + +++      QL  +++     + +I+R   +      +  N   
Sbjct: 559 VKWFGTCTDIHDLVLARQEARQTREQLQQVIQHAKIVLWVIDRNNRVKVLEGDIDANE-- 616

Query: 482 SKLFGYPVEDILRKPFTVFLEQNT--PSVMNHYLTEILSLDLRQTL---EKITLGSTKEE 536
                   + +L K      E            + EIL       +     ++       
Sbjct: 617 ----HLSKDQLLGKDVYDVFEFTDNNRERWRGPIQEILQGKQSDEIVNGGYMSENRYYRT 672

Query: 537 KLLSLRIIIKKLPF------SSCYSLTMHDISEWKQEKN----------KLSHAKKIAEK 580
           +L+ L +   +                  DI+E ++ +           +L   +  A++
Sbjct: 673 RLVPL-MSTSRTAGIESQAFVDGVIGVSMDITELREREEQLKEQEKENSRLLANEAAAKE 731

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            S  KS FLA +SHEIRTP+  +IG SE++ +       N    E A  I RS N +L +
Sbjct: 732 ASRMKSQFLANMSHEIRTPIAGVIGMSELLFDMDL----NEEQKECAENIHRSANSLLTV 787

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI---PRI 697
           +ND+LD SK+ESG++++     SL   + +   ++   AN K +  ++   + +    R+
Sbjct: 788 INDILDFSKVESGRLDVEEVQFSLSVVLRDVNKMMAFAANRKGLEYQSLIQDEVQSDLRV 847

Query: 698 LADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVI--LRVRDTGVGMTNYELE 754
           + D   ++QI  N+L+N+I FT  G  Q+ +S +H + E V     + DTG+G+     +
Sbjct: 848 IGDPGRLRQILTNVLTNSIKFTSVGTVQLSVSISHETKETVTVNFSIVDTGIGIEEEVRK 907

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +  +PF Q  +S   R  GTGLGL ++K +V+   G+ ++ S   +GT      P
Sbjct: 908 RLFQPFSQADSSTARRFGGTGLGLTISKNLVELMKGQIWLDSKLGQGTTATFWIP 962



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/157 (12%), Positives = 40/157 (25%), Gaps = 6/157 (3%)

Query: 69  DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID 128
            +E  F +      V   W     G     S+      G    K +G           + 
Sbjct: 454 QNEKQFEYITNFMPV-MVWTTTPDGMHDWFSKRWYDYTGLTVDKSLGEGWRLPFHPDDMH 512

Query: 129 PNNHIG-DLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187
                    LK  + +  +      +G   +  +   A+P Y         + FG     
Sbjct: 513 ATAERWFHSLKTGDEYNTEYRCQRFDG--QWRWMLGRAVPFYDDAGRIV--KWFGTCTDI 568

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDI 224
                 R   ++  ++   + +  K    V      +
Sbjct: 569 HDLVLARQEARQTREQLQQVIQHAKIVLWVIDRNNRV 605


>gi|296120393|ref|YP_003628171.1| PAS sensor protein [Planctomyces limnophilus DSM 3776]
 gi|296012733|gb|ADG65972.1| PAS sensor protein [Planctomyces limnophilus DSM 3776]
          Length = 1561

 Score =  346 bits (888), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 111/807 (13%), Positives = 254/807 (31%), Gaps = 67/807 (8%)

Query: 38   KSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVR-FTWNIDAHGYLK 96
            +++  +  H    Q     Q+  +         E    +           W++D      
Sbjct: 644  RARATSDQHGRPIQFVGVTQDITARKQAELARLEVEERYRLAILATNDLIWDLDPVAGTV 703

Query: 97   EISEELPKTIGNYAFKMIGMRLC-DVSDILHIDP-NNHIGDLLKRQNT-WYGKTTLWPIE 153
              SE+   T+G        ++   D       +     +   +    T W         +
Sbjct: 704  AWSEQYAATLGRTPESSDSLQWWIDRIHPADRERTARSLSAAVDGTATYWTADYEFLRAD 763

Query: 154  GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
            G    V   +      +R+      R  G +             +R  +    + E    
Sbjct: 764  G----VWASIHDRAYIARDAAGHARRVVGAMQDVTDRKRAETEVRRTAELLRAVAEGTSD 819

Query: 214  HSSVEKEKYDIFSQQSPP--PHLRMKNKVSSLTEYYAHKDD-VLKTEKYPLLTSEESSLP 270
               V+                  +   +V    +      +      +          + 
Sbjct: 820  AVFVKDRDGKYLLANQAACQFMGKPLEQVLGRDDSEWFDAEGARLVLEVDREVMRSGLVR 879

Query: 271  EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330
              E+  T N    T        ++        +      +     +    L   +VD   
Sbjct: 880  TSEETLTANYVTRTYLASKAPYRDELGNVIGIIGISRDITARKEAERMLRLNQFSVDHAV 939

Query: 331  IPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEI-AGGLSTLLDAPKLSDNNAIKPVMLYR 388
                ++ +   + Y N +      Y   + +      +           +          
Sbjct: 940  DSIFWINASSEILYVNNAACRTLGYTRDEMLGKTVPDIDPNFLPEAWPAHWEELRCR--- 996

Query: 389  SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
                  + +     +  +      +         Q+        I  +  + +  + +M 
Sbjct: 997  -----GSFTFESDHVTKDGRT---LKTEVTVNYLQYEGQEYNCAIMRDISERKQAELEMR 1048

Query: 449  IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP-S 507
              + ++ + LE+T+DGI +++ EG +L  NR    ++ +P E I     +  +  +    
Sbjct: 1049 QSLSRMRATLESTADGILVVDLEGRVLDYNRRFISIWRFPEEMIAEANKSDIIASSDQHQ 1108

Query: 508  VMNHYLTEILSLDLRQTLEKITLGST----------KEEKLLSLRIIIKKLPFSS-CYSL 556
             +   L ++   +      +    +           K+ +++      + +        L
Sbjct: 1109 AVQKMLAQLKDPEGFVRRVQEMYQNREESSFDVLEFKDGRIVERFSQPQWMDGQPVGRVL 1168

Query: 557  TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            +  D+SE ++ + +L  ++K+          F   ++H+    LT I  + E++ +Q+  
Sbjct: 1169 SFRDVSEQRKLEEQLRQSQKM-----EAVGQFAGGIAHDFNNLLTVINCYCELLLDQKSQ 1223

Query: 617  PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
            P     + E   +I   G     +   LLD S+    + +     + L++ +  +  L++
Sbjct: 1224 PQN---WRESVQHIRDEGLRAAQLTKQLLDFSR----RSHFQPRVIHLNDVIEGSQKLLR 1276

Query: 677  LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH----- 731
                 +RI +       +P I AD   + Q+ +N++ NA    P+GG++ I T+      
Sbjct: 1277 RLI-GERIQLILHLDPLLPAIKADTTHLDQVLMNLVVNARDAMPAGGRLTIRTSRLSPQD 1335

Query: 732  ---------TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
                          V L V DTG+GM+     +  +PF          G G+GLGL +  
Sbjct: 1336 ARQFLTNISLETPYVQLEVADTGIGMSADVQARIFEPFFTTK----EIGSGSGLGLAVVH 1391

Query: 783  AMVDANMGKFYIFSTPAKGTLIEIIFP 809
             ++  + G+ ++ + P  GT   ++FP
Sbjct: 1392 GIMQQHDGQIHVTTEPGVGTTFRLLFP 1418



 Score =  174 bits (441), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 60/542 (11%), Positives = 145/542 (26%), Gaps = 27/542 (4%)

Query: 69  DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID 128
           +SE  F         +  W     G L  ++ +  +  G    ++ G     V     + 
Sbjct: 423 ESEQRFRELADAIP-QIVWVAALDGGLTYLNAKATEYTGVGMDQLTGWSWEQVIHPEDVP 481

Query: 129 PNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNR 188
                      Q                         +PI   +      R +G      
Sbjct: 482 NAIERWTATLEQELPRDIELRIRQTDGAYR-WHISRQVPIRDASGAIV--RWYGTCTDID 538

Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS-------PPPHLRMKNKVS 241
                +A  ++ +        I    S +     +  +            P +   ++  
Sbjct: 539 DLKRTQAALQQSESTLEEAMRIGDMGSWIIDLVQNRATWSDEGFRLLGYVPGVDQPSQEL 598

Query: 242 SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301
            L   Y    D +         + ++SL  +  F   +              +      +
Sbjct: 599 FLNGVYPADRDTV-RHDLANAIATQTSLNSEFRFVRPDGQLRWLHSRARATSDQHGRPIQ 657

Query: 302 YLSHRNHPSLSAYFDEGENLTPET--VDKCPIPFFVYSHG---NLFYANPSFLLLTKYKS 356
           ++      +     +       E   +        ++           +  +        
Sbjct: 658 FVGVTQDITARKQAELARLEVEERYRLAILATNDLIWDLDPVAGTVAWSEQYAATLGRTP 717

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
                +   +  +      +D       +    D T    +A    ++ +     ++   
Sbjct: 718 ESSDSLQWWIDRIH----PADRERTARSLSAAVDGTATYWTADYEFLRADG-VWASIHDR 772

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476
            +   +         G   +  D +  + ++      L ++ E TSD + + +R+G  L 
Sbjct: 773 AYIARDAAGHARRVVGAMQDVTDRKRAETEVRRTAELLRAVAEGTSDAVFVKDRDGKYLL 832

Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
            N+A  +  G P+E +L +  + + +     ++     E++   L +T E  TL +    
Sbjct: 833 ANQAACQFMGKPLEQVLGRDDSEWFDAEGARLVLEVDREVMRSGLVRTSE-ETLTANYVT 891

Query: 537 KLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
           +         +    +         DI+  K+ +  L   +   +      S F    S 
Sbjct: 892 RTYLASKAPYRDELGNVIGIIGISRDITARKEAERMLRLNQFSVDHAVD--SIFWINASS 949

Query: 595 EI 596
           EI
Sbjct: 950 EI 951



 Score =  131 bits (329), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 42/532 (7%), Positives = 125/532 (23%), Gaps = 48/532 (9%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT- 148
           D+ G     +    K       +++     D + +   D    I     ++    G    
Sbjct: 38  DSSGRYLFCNAAGTKLTNRTREQILDQ---DDTAVFGSDTA-RIMRAQDQRVMQSGLPAA 93

Query: 149 --LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNR------------------ 188
                  G NL   I +   P   ++    G     I                       
Sbjct: 94  ETHVVQIGDNLR-SIQMTTKPYQDQHGTVQGV--IVIARDFADAAMGNRSHTVGVAAANH 150

Query: 189 -VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS------ 241
              +      +  +++ +    I +  S V +              L   +         
Sbjct: 151 LERSGAEQALRESERQLADAQRIARIGSWVWEPSSGKVWWSRGVFALFGVDPQVVQPSFQ 210

Query: 242 SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301
           +  +     D      +   + +      +       +             ++       
Sbjct: 211 AFLQLLHPDDLPTAVARVDAMLAGADRFEDDLRIIRPDGQMIWLHSRAVATRDADGNILR 270

Query: 302 YLSHRNHPSLS----AYFDEGENLTPETVDKCPIPFFVYSHGN--LFYANPSFLLLTKYK 355
                   +      A     +       +  P+  +V+      + Y+N   +    + 
Sbjct: 271 VEGTDQDITARKLAAAEVQASQKFVKAVAETSPLTIYVFDLQQQSITYSNYYLMRDLGFT 330

Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
             + I+             +   N    +  + +        A       +      ++ 
Sbjct: 331 P-EAIQGRSWAELAELVHPIDFANVTTLLQRWDTVDDQQVLLAEYRLQDVHGNWRWFVSR 389

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
               +           G   +  + +  ++ +     +   + +A    + +   +G + 
Sbjct: 390 DRVFERTPDGRVSQIIGTAEDITERKRVEQSLRESEQRFRELADAIPQIVWVAALDGGLT 449

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
             N   ++  G  ++ +    +   +            T  L  +L + +         +
Sbjct: 450 YLNAKATEYTGVGMDQLTGWSWEQVIHPEDVPNAIERWTATLEQELPRDI--ELRIRQTD 507

Query: 536 EKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
                       +  +S     +  T  DI + K+ +  L  ++   E+   
Sbjct: 508 GAYRWHISRQVPIRDASGAIVRWYGTCTDIDDLKRTQAALQQSESTLEEAMR 559



 Score = 93.9 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 51/443 (11%), Positives = 119/443 (26%), Gaps = 41/443 (9%)

Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP--HLRMKNKV 240
             +++R D    A    L    + + E       V+          +       R + ++
Sbjct: 2   TANLDREDVRNSAPSLPLLDLLAAVSEASLDALFVKDSSGRYLFCNAAGTKLTNRTREQI 61

Query: 241 SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQED--------FHTINLNQYTKKQYFGTL 292
               +      D  +  +       +S LP  E           +I +     +   GT+
Sbjct: 62  LDQDDTAVFGSDTARIMRAQDQRVMQSGLPAAETHVVQIGDNLRSIQMTTKPYQDQHGTV 121

Query: 293 QNNSKESF----------------EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY 336
           Q     +                    +H           E E    +      I  +V+
Sbjct: 122 QGVIVIARDFADAAMGNRSHTVGVAAANHLERSGAEQALRESERQLADAQRIARIGSWVW 181

Query: 337 SHGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIA 395
              +   + +     L                 LL    L    A    ML  +DR    
Sbjct: 182 EPSSGKVWWSRGVFALFGVDPQVVQPSFQAFLQLLHPDDLPTAVARVDAMLAGADR---- 237

Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
               L  I+ +    + +        +     +   G + +    ++   +++     + 
Sbjct: 238 FEDDLRIIRPDG-QMIWLHSRAVATRDADGNILRVEGTDQDITARKLAAAEVQASQKFVK 296

Query: 456 SILEATSDGIAIINREGI-ILSTNRAVSKLFGYPVEDILRKPFTVF---LEQNTPSVMNH 511
           ++ E +   I + + +   I  +N  + +  G+  E I  + +      +     + +  
Sbjct: 297 AVAETSPLTIYVFDLQQQSITYSNYYLMRDLGFTPEAIQGRSWAELAELVHPIDFANVTT 356

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRII-----IKKLPFSSCYSLTMHDISEWKQ 566
            L    ++D +Q L                               S    T  DI+E K+
Sbjct: 357 LLQRWDTVDDQQVLLAEYRLQDVHGNWRWFVSRDRVFERTPDGRVSQIIGTAEDITERKR 416

Query: 567 EKNKLSHAKKIAEKESSHKSDFL 589
            +  L  +++   + +      +
Sbjct: 417 VEQSLRESEQRFRELADAIPQIV 439


>gi|298485838|ref|ZP_07003916.1| Signal transduction histidine kinase [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298159662|gb|EFI00705.1| Signal transduction histidine kinase [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 576

 Score =  346 bits (888), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 121/529 (22%), Positives = 211/529 (39%), Gaps = 50/529 (9%)

Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS-----TLLDAPKLSDNNAIKPVM-- 385
                HG +   N     +  Y S D ++            L+       +    P+   
Sbjct: 48  IATDEHGVIQIFNVGAERMLGYHSEDVVDKITPADISDPAELIIRAAALSHELNTPITPG 107

Query: 386 ---LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
              L       I     L  I+ +     AM        +     +    I  ++   + 
Sbjct: 108 FEALVFKASRGIEDIYELTYIRKDGSRLSAM-VSVTSLRDSAETIIGYLLIGTDNTARKQ 166

Query: 443 NK-------RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
            +       +++  +     S++E+  D + + + +GII   N+ +  L     ++++  
Sbjct: 167 EEEAQALLDQRLRDQQFYTRSLIESNIDALMMTDPQGIISDVNKQMMALTARTRDELIGA 226

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--C 553
           P   F     P+  +  +  +LS       E         E ++S               
Sbjct: 227 PCKNFF--TDPASADAAIKRVLSEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRKLKG 284

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
                 D++E K+ +  L       E  S  KS+FLA +SHE+RTPL A+IGFSE +K+ 
Sbjct: 285 VFAAARDVTERKRFERTLEEKNVELEHASHMKSEFLATMSHELRTPLNAVIGFSEALKDG 344

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
             G + +     Y   I  SG  +L ++ND+LD+SK+E+G M L  EPV LDE +S ++ 
Sbjct: 345 MVGNMTDA-QRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELEPVDLDELLSNSLL 403

Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
           +V+  A  +RI ++     +   +  D R  KQI  N+L+NA+ F+  GG + ++    S
Sbjct: 404 IVREQAALQRIQLKLETEADFGLLELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRQVS 463

Query: 734 -----------------------NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
                                   + + L V DTG+G+   ++ K  K F QI +    +
Sbjct: 464 FARTGVIEGDWPAHTFPLPSGDYEQFLELSVSDTGIGIAQSDMNKLFKAFSQIDSGLARK 523

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819
            EGTGLGL + K + + + G   + S    G    +  P+     P +C
Sbjct: 524 FEGTGLGLAMVKQLTELHGGCVAVASVKDLGARFVVWLPI----RPPEC 568



 Score = 45.4 bits (106), Expect = 0.040,   Method: Composition-based stats.
 Identities = 24/265 (9%), Positives = 65/265 (24%), Gaps = 26/265 (9%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGM-RLCDVSDILHI------------DPNNHIGD 135
            D HG ++  +    + +G ++  ++      D+SD   +             P     +
Sbjct: 50  TDEHGVIQIFNVGAERMLGYHSEDVVDKITPADISDPAELIIRAAALSHELNTPITPGFE 109

Query: 136 LL----KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN 191
            L     R      + T    +G+   +   ++   +        G+   G  +  R   
Sbjct: 110 ALVFKASRGIEDIYELTYIRKDGS--RLSAMVSVTSLRDSAETIIGYLLIGTDNTARKQE 167

Query: 192 DP-----RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSSLT 244
           +          +        L E       +   +  I            R ++++    
Sbjct: 168 EEAQALLDQRLRDQQFYTRSLIESNIDALMMTDPQGIISDVNKQMMALTARTRDELIGAP 227

Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
                 D          + SE      +      +  +        T  +  ++     +
Sbjct: 228 CKNFFTDPASADAAIKRVLSEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRKLKGVFA 287

Query: 305 HRNHPSLSAYFDEGENLTPETVDKC 329
                +    F+         ++  
Sbjct: 288 AARDVTERKRFERTLEEKNVELEHA 312


>gi|317483933|ref|ZP_07942870.1| hsp90-like protein [Bilophila wadsworthia 3_1_6]
 gi|316924807|gb|EFV45956.1| hsp90-like protein [Bilophila wadsworthia 3_1_6]
          Length = 858

 Score =  346 bits (888), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 112/447 (25%), Positives = 184/447 (41%), Gaps = 22/447 (4%)

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
                 S+       A L          LA T     +  +  ++     +E      R+
Sbjct: 279 EYARRISNGQL---EATLDVYGQGELGVLANTLRSMARIVKQDQDRLNRLVEERTDQLRL 335

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
           ++ ++  E   L +IL    D I   +  GI    N+A     G   ++I+ K      +
Sbjct: 336 SQERLLKESALLKTILNTVPDLIFYKDMNGIYKGCNKAFGAFIGKSEQEIIGKDDVELFQ 395

Query: 503 ---QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYS 555
                    +   L  +         E+  L    + K + L  I               
Sbjct: 396 LSGNAAQKFIEDDLQVMRGKLDTLIREEEVLY--PDGKRIYLETIKTLYYSEDNAPFGMV 453

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
               +I   K+ +   + A + A + S  KS+F+AR+SHEIRTPL AIIG + ++K    
Sbjct: 454 GISRNIQLRKETEKAYAEAIQRAHEASKAKSEFVARISHEIRTPLNAIIGMNYLLKQSCT 513

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
            P+       Y   ++ S   +L I+ND+LD SKIESGK+ +    +S+++ V + +S+ 
Sbjct: 514 DPV----QESYLRKMELSAKNLLSIINDVLDFSKIESGKLEIEKNTLSIEKLVRDVVSIN 569

Query: 676 QLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTS 733
           +  A        T     IP +L  D   + QI LN++SNA+ F+  G  +I +      
Sbjct: 570 EPKAKAANESFETHIDPGIPDVLIGDTLRISQIMLNLVSNAVKFSHHGTIKIEVLCERVH 629

Query: 734 NEEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
            E V     VRD G+GM+  +L+K   PF Q   S   +  GTGLGL + K +V+   G+
Sbjct: 630 GENVTLLFSVRDQGIGMSQQQLDKLFIPFTQADGSTTRKYGGTGLGLSICKMLVELMHGE 689

Query: 792 FYIFSTPAKGTLIEIIFPLY--DTSHP 816
            +  +    G+       L   D + P
Sbjct: 690 IWAVTEEGVGSTFFFRLQLEKKDAATP 716


>gi|138894502|ref|YP_001124955.1| two-component sensor histidine kinase [Geobacillus
           thermodenitrificans NG80-2]
 gi|196247897|ref|ZP_03146599.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Geobacillus sp. G11MC16]
 gi|134266015|gb|ABO66210.1| Two-component sensor histidine kinase [Geobacillus
           thermodenitrificans NG80-2]
 gi|196212681|gb|EDY07438.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Geobacillus sp. G11MC16]
          Length = 738

 Score =  346 bits (888), Expect = 9e-93,   Method: Composition-based stats.
 Identities = 106/739 (14%), Positives = 236/739 (31%), Gaps = 66/739 (8%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151
           +G   +++E   K      F +IG       +++  D       +L++  ++  +  +  
Sbjct: 51  NGEFVDVNEAACKLFEMDKFDLIGRSFSSFLELVPPDILLFQRSMLQKFGSFSDELLIKL 110

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
            +    +V   +          EF       ++                +  F  +    
Sbjct: 111 PDDKVKHVEFSMK----KDVFNEFD----LVMMRDVSAHKALERERIIHEFLFRDVFNRA 162

Query: 212 KGHSSVEKEKYDIFSQQSPPP--HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
                +  E                  K K+ +L+       +        L   +E   
Sbjct: 163 VDGIVIFDEFGRFIDVNPAFSMSLNLEKGKLLNLSFQQFVARECADEFARLLSEVKEKGT 222

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFE-YLSHRNHPSLSAYFDEGENLTPETVDK 328
            + E             +   T    S              ++     + E       ++
Sbjct: 223 AKGELSLVRLDGTVKMFELTATSNVYSGFYMAIMRDVTERKNMEIKLQKSEERFRAIFEQ 282

Query: 329 CPIPFFVYSH-GNLFYANPSFLLLTKYKSV--------DDIEIAGGLSTLLDAPKLSDNN 379
                 ++   G +  ANP+     +            D ++        + +       
Sbjct: 283 AHEAIIIWDDFGYILNANPAASRTFELPLNLLVRRNLLDFVQYGDEKVKRIFSEFRRKGE 342

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
               +  +  +         +     +                          I     +
Sbjct: 343 IRDELTFHMPNGEDKQLEFTMKKGAIDG---------------------YHLTIFRNVSE 381

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
            R  +R++     +  SI +   DGI + + +  I+  N    + F    E +L +    
Sbjct: 382 RRKIERELRESEQKFRSIFDHAMDGILLWDEKHRIIDANPIACEFFSATKEALLGQTVME 441

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH 559
            + +     +N    +           ++      +EK++   +  + +P      +   
Sbjct: 442 LVPERARRQLNKLFVQCERAGEAS--GEVEFSDEGKEKIVEFSLKKEVIPGVG--MMRFR 497

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           D++E K+ + +L  +  +         +  A ++HEIR P+TA+ GF ++++    G   
Sbjct: 498 DVTERKEMELQLRKSDTLNVV-----GELAAGIAHEIRNPMTALKGFIQLLQGSVGG--- 549

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
              Y  Y N I      +  I+ + L ++K ++ +   +     + + + + I L+   A
Sbjct: 550 --DYSMYFNVIMSELKRIESIITEFLVLAKPQAVQYKQN----DICKIMQDTIDLISAQA 603

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
               + I   F   +P +  +   +KQ+ +NIL NAI   P GG I +    T    V +
Sbjct: 604 MMHNVQIIADFERGLPPVYCEPNQLKQVFINILKNAIEVMPKGGDITVRIART-GRHVRI 662

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            + D G G+   +++K  +PF         +  GTGLGL ++  +++ + GK  + S   
Sbjct: 663 SITDQGCGIPKDKIKKLGEPFYTT------KERGTGLGLMVSYKIIEEHRGKIDVESEVG 716

Query: 800 KGTLIEIIFPLYDTSHPHD 818
            GT   I  P+  T    +
Sbjct: 717 VGTTFHITLPIERTEREDN 735



 Score = 71.2 bits (173), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 33/368 (8%), Positives = 92/368 (25%), Gaps = 32/368 (8%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D  G   +++     ++     K++ +           D    +   +K + T  G+ +L
Sbjct: 170 DEFGRFIDVNPAFSMSLNLEKGKLLNLSFQQFVARECADEFARLLSEVKEKGTAKGELSL 229

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGF--GIVHVNRVDNDPRALGKRLDKKFSHL 207
             ++GT     +   +          + + GF   I+       +     ++ +++F  +
Sbjct: 230 VRLDGTVKMFELTATS----------NVYSGFYMAIMRDVTERKNMEIKLQKSEERFRAI 279

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHL----RMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
            E       +  +   I +                   +L ++  + D+ +K        
Sbjct: 280 FEQAHEAIIIWDDFGYILNANPAASRTFELPLNLLVRRNLLDFVQYGDEKVKRIFSEFRR 339

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
             E  + ++  FH  N      +        +      + +      +     E E    
Sbjct: 340 KGE--IRDELTFHMPNGEDKQLEFTMKKGAIDGYHLTIFRNVSERRKIERELRESEQKFR 397

Query: 324 ETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
              D       ++     +  ANP             +         L   +        
Sbjct: 398 SIFDHAMDGILLWDEKHRIIDANPIACEFFSATKEALLGQTVME---LVPERARRQLNKL 454

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
            V   R+                +      + F       +            +  + + 
Sbjct: 455 FVQCERAGEASGEVEF------SDEGKEKIVEFSL----KKEVIPGVGMMRFRDVTERKE 504

Query: 443 NKRKMEIE 450
            + ++   
Sbjct: 505 MELQLRKS 512



 Score = 67.7 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 57/142 (40%), Gaps = 3/142 (2%)

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
             +        R+++  +     I E + D I I+N+ G  +  N A  KLF     D++
Sbjct: 14  TQDVRLLEEENRRLKERLNSYSIIFERSLDAIVILNKNGEFVDVNEAACKLFEMDKFDLI 73

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553
            + F+ FLE   P ++    + +       +     L    ++K+  +   +KK  F+  
Sbjct: 74  GRSFSSFLELVPPDILLFQRSMLQKFG---SFSDELLIKLPDDKVKHVEFSMKKDVFNEF 130

Query: 554 YSLTMHDISEWKQEKNKLSHAK 575
             + M D+S  K  + +    +
Sbjct: 131 DLVMMRDVSAHKALERERIIHE 152


>gi|222056634|ref|YP_002538996.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           FRC-32]
 gi|221565923|gb|ACM21895.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           FRC-32]
          Length = 591

 Score =  346 bits (887), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 98/410 (23%), Positives = 183/410 (44%), Gaps = 22/410 (5%)

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK-RKMEIEVMQLCSIL 458
           L TI           +          E      +  +  +    +   +  E  +L +IL
Sbjct: 198 LRTISAIAARIGKGEYGLRVPRESSDEVGELAVVMNDMSERIEAQLSSIMAERNRLDTIL 257

Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
               +G+ + + +GII   N A  K+F    ED+  +P    +E +    ++    +I++
Sbjct: 258 RGMGEGLMVTDAQGIITLVNPAFRKVFSVD-EDVEGRPL---IEVSRQPALHAAYRKIMA 313

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578
             + +  E    G  K+  +L+  + +      +      HDIS+ K+            
Sbjct: 314 DGIERQEEMSLNG-EKDGNILTHWVPLIDGNRLTGVVAVFHDISDLKRL----------- 361

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
              ++ + DF+A VSHE+RTP++ I G++E +           R   +   I      + 
Sbjct: 362 ---AATRRDFVANVSHELRTPVSVIQGYAETLLAGALES-DPDRARRFIQVIHNHAERLS 417

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
            ++ DLL +S++ESGK+ L   P++L  AV +A+SL+   A +K I + T        +L
Sbjct: 418 ALIADLLTLSELESGKVLLEPHPLNLRSAVKQAMSLLSQRATDKGITLDTGNIEASRFVL 477

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
           AD   + Q+ +N+L NAI +TP  G++ + T     E + + V DTG+G+   +L +  +
Sbjct: 478 ADKGKLDQVLVNLLDNAIKYTPGNGKVTV-TAEDEAEMLKISVTDTGLGIPAKDLPRIFE 536

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            F ++  ++     GTGLGL + K +V ++ G   + S P +G+      
Sbjct: 537 RFYRVDEARSRDKGGTGLGLSIVKHIVQSHGGMISVKSIPGEGSTFSFTL 586



 Score = 43.1 bits (100), Expect = 0.20,   Method: Composition-based stats.
 Identities = 39/322 (12%), Positives = 82/322 (25%), Gaps = 22/322 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK-T 147
            DA G +  ++    K   +    + G  L +VS    +  +     ++        + +
Sbjct: 267 TDAQGIITLVNPAFRKVF-SVDEDVEGRPLIEVSRQPAL--HAAYRKIMADGIERQEEMS 323

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                +G  L   + L             G R  G+V V    +D + L        +++
Sbjct: 324 LNGEKDGNILTHWVPL-----------IDGNRLTGVVAVFHDISDLKRLAATRRDFVANV 372

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
               +   SV +   +              ++     +   +  + L      LLT  E 
Sbjct: 373 SHELRTPVSVIQGYAETL---LAGALESDPDRARRFIQVIHNHAERLSALIADLLTLSEL 429

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
              +          +   KQ    L   + +    L   N  +      +   L    V+
Sbjct: 430 ESGKVLLEPHPLNLRSAVKQAMSLLSQRATDKGITLDTGNIEASRFVLADKGKLDQVLVN 489

Query: 328 KCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
                  +   +G +         + K    D                      +     
Sbjct: 490 LLDNAIKYTPGNGKVTVTAEDEAEMLKISVTDTGLGIPAKD---LPRIFERFYRVDEARS 546

Query: 387 YRSDRTCIAASARLHTIQWNRE 408
                T +  S   H +Q +  
Sbjct: 547 RDKGGTGLGLSIVKHIVQSHGG 568


>gi|192290456|ref|YP_001991061.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas
           palustris TIE-1]
 gi|192284205|gb|ACF00586.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas
           palustris TIE-1]
          Length = 610

 Score =  346 bits (887), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 115/386 (29%), Positives = 182/386 (47%), Gaps = 20/386 (5%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
             + +E  +   +    SD I+  NR G +   + A   L G PV  +        +   
Sbjct: 197 ALLNVEEERYRLLARNMSDVISRHNRNGAVRFISPAAENLLGTPVARLAEHGLFDRVHVA 256

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLG---STKEEK-----LLSLRIIIKKLP------- 549
                   +++        ++E          +  +      + + +  + L        
Sbjct: 257 DRPAYLKAMSDAARGRETGSVEFRIRRDVARDERGRPSAAEFVWVEMRCRPLESNLTTTA 316

Query: 550 ----FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
                 +     M DI+E K  +  L  A+  A++  + KS FLA +SHE+RTPL AIIG
Sbjct: 317 ASNAGETEVVAVMRDITERKIHEQALDQARAEADRADAAKSRFLATMSHELRTPLNAIIG 376

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
           FS++I       LG  R  EYA  I+ SG  +L +VN +LD+SK+ESG   +  EP +  
Sbjct: 377 FSDMILQDDVLMLGPERRKEYAQLINDSGQHLLSVVNGILDMSKMESGSFEIVPEPFAPR 436

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725
            A+    +L+ L A +  I + T    N+P ++ D R+ KQI LN++SNAI FT  GG +
Sbjct: 437 PALLNCCNLLALKARDSGIDLVTRAPENLPEVVGDPRAFKQILLNLVSNAIKFTERGGTV 496

Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
            +S        ++LRV DTGVG+   +L++   PF Q   + Q R EGTGLGL + K++V
Sbjct: 497 TVSAAVE-GTRLVLRVTDTGVGIAEEDLKRLGDPFFQAGKTYQRRHEGTGLGLSIVKSLV 555

Query: 786 DANMGKFYIFSTPAKGTLIEIIFPLY 811
             + G+  + S    GT + +  PL 
Sbjct: 556 RMHGGEIEVQSQIDCGTTVTVSLPLA 581


>gi|330969226|gb|EGH69292.1| PAS protein [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 576

 Score =  346 bits (887), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 116/520 (22%), Positives = 205/520 (39%), Gaps = 46/520 (8%)

Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS-----TLLDAPKLSDNNAIKPVM-- 385
                HG +   N     +  Y S D ++            L+       +    P+   
Sbjct: 48  IATDEHGVIQIFNVGAERMLGYHSEDVVDKITPADISDPAELIIRAAALSHELNTPITPG 107

Query: 386 ---LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
              L       I     L  I+ +     AM        +     +    I  ++   + 
Sbjct: 108 FEALVFKASRGIEDIYELTYIRKDGSRLSAM-VSVTSLRDSAETIIGYLLIGTDNTARKQ 166

Query: 443 NK-------RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
            +       +++  +     S++E+  D + + + +GII   N+ +  L G   ++++  
Sbjct: 167 EEEAQALLDQRLRDQQFYTRSLIESNIDALMMTDPQGIISDVNKQMMALTGRTRDELIGA 226

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--C 553
           P   F     P+  +  +  +LS       E         E ++S               
Sbjct: 227 PCKNFF--TDPASADAAIKRVLSEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRKLKG 284

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
                 D++E K+ +  L       E  S  KS+FLA +SHE+RTPL A+IGFSE +++ 
Sbjct: 285 VFAAARDVTERKRFERTLEEKNIELEHASHMKSEFLATMSHELRTPLNAVIGFSEALRDG 344

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
             G + +     Y   I  SG  +L ++ND+LD+SK+E+G M L  E V LDE +S ++ 
Sbjct: 345 MVGDMTDA-QRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELESVDLDELLSNSLL 403

Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
           +V+  A  + I ++         +  D R  KQI  N+L+NA+ F+  GG + ++     
Sbjct: 404 IVREQAALQHIQLKLETEAEFGELELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRLVP 463

Query: 734 -----------------------NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
                                   + + L V DTG+G+   ++ K  K F QI +    +
Sbjct: 464 ASQAGLIDGDWPTYGFALPSGDCEQFLELSVSDTGIGIAQSDMNKLFKAFSQIDSGLARK 523

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            EGTGLGL + K + + + G   + S    G    +  P+
Sbjct: 524 FEGTGLGLAMVKQLTELHGGCVAVASVKDLGARFVVWLPI 563



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/238 (11%), Positives = 66/238 (27%), Gaps = 10/238 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            D  G + ++++++    G    ++IG    +         +  I  +L        + T
Sbjct: 199 TDPQGIISDVNKQMMALTGRTRDELIGAPCKNFFTDP-ASADAAIKRVLSEHKVSDYELT 257

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           +   +GT     +   A   + R+R+  G   F                +  + +  H  
Sbjct: 258 VRAYDGTETV--VSYNAATFHDRDRKLKGV--FAAARDVTERKRFERTLEEKNIELEHAS 313

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK-VSSLTEYYAHKDDVLKTEKYPLLTSEES 267
            +K    +    +              +++  V  +T+        +      LL+    
Sbjct: 314 HMKSEFLATMSHELRTPLNAVIGFSEALRDGMVGDMTDAQRRYIGDIFNSGQHLLS---- 369

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
            + +  D   +     T +     L      S   +  +          E E    E 
Sbjct: 370 LINDILDLSKVEAGMMTLELESVDLDELLSNSLLIVREQAALQHIQLKLETEAEFGEL 427



 Score = 44.6 bits (104), Expect = 0.062,   Method: Composition-based stats.
 Identities = 27/270 (10%), Positives = 70/270 (25%), Gaps = 36/270 (13%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGM-RLCDVSDILHI------------DPNNHIGD 135
            D HG ++  +    + +G ++  ++      D+SD   +             P     +
Sbjct: 50  TDEHGVIQIFNVGAERMLGYHSEDVVDKITPADISDPAELIIRAAALSHELNTPITPGFE 109

Query: 136 LL----KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN 191
            L     R      + T    +G+   +   ++   +        G+   G    N    
Sbjct: 110 ALVFKASRGIEDIYELTYIRKDGS--RLSAMVSVTSLRDSAETIIGYLLIGT--DNTARK 165

Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL------------RMKNK 239
                   LD++   L + +    S+ +   D      P   +            R +++
Sbjct: 166 QEEEAQALLDQR---LRDQQFYTRSLIESNIDALMMTDPQGIISDVNKQMMALTGRTRDE 222

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
           +          D          + SE      +      +  +        T  +  ++ 
Sbjct: 223 LIGAPCKNFFTDPASADAAIKRVLSEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRKL 282

Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
               +     +    F+         ++  
Sbjct: 283 KGVFAAARDVTERKRFERTLEEKNIELEHA 312


>gi|108756960|ref|YP_634851.1| response regulator/sensory box histidine kinase [Myxococcus xanthus
           DK 1622]
 gi|108460840|gb|ABF86025.1| response regulator/sensory box histidine kinase [Myxococcus xanthus
           DK 1622]
          Length = 671

 Score =  346 bits (887), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 95/529 (17%), Positives = 197/529 (37%), Gaps = 34/529 (6%)

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTK 353
             +   + +  R     +            T +  P   +     G+  YAN +    T 
Sbjct: 156 EQQIQRQAVLLRQREREALERQSELRHLRLT-ESLPEVMWAARSDGSFTYANRAARDYTG 214

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
            ++   + +   L      P   +      V   R  +       R   ++         
Sbjct: 215 IQAEQPLSLNTFLE--FVHPVDREAMRAAWVQAIRMGQRVE----REFRLRRFDGVYRWH 268

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-G 472
                 + ++         +  +  D R  +  +     +  + L+AT D + + + +  
Sbjct: 269 LARAVPERDENGLLAGWIAVATDIDDKRRAEEAL----GRFKATLDATLDCVLMFSPDSL 324

Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
            +   N   +K      ++++             +     L  ++S  L       T   
Sbjct: 325 TLTYANAGAAKQLASSTDELVGLSVLEVEGAFDEAGFRKLLAPLVSGTLPS-QTYSTSHR 383

Query: 533 TKEEKLLSLRIIIKKLPFSSC---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
            ++   + + ++++ +        +     DI+E ++ +  L          S  K  FL
Sbjct: 384 RRDGSEVPVEVVLQYVAADGGPGRFISVARDITERQRAETAL-------RLASEAKDSFL 436

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
           A  SHE+RTPL A  G +  +   + G        +    I+R  + +  +V DLLDIS+
Sbjct: 437 AAASHELRTPLAAAKGHA-HLALLKLGGETEAGPGKSLKIINRQIDRMAKLVEDLLDISR 495

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709
           +++G+++L  E   L   V E    + + +    I +    A++      D   + Q+  
Sbjct: 496 LQAGRLSLELERFDLSHLVHETRDRMAVLSQGHEIHVE---ASDQLEGTWDRGRLDQVLT 552

Query: 710 NILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
           N+LSNA+ ++P GG + +      +E V L V DTGVG+   +     + FG+   S   
Sbjct: 553 NLLSNALRYSPEGGPVWVRVQGEHDEGVHLSVTDTGVGIPKEKQGLIFERFGRAHGS--- 609

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFS--TPAKGTLIEIIFPLYDTSHP 816
           +  G GLGL +++ +V+ + G+ ++ S     +G+   +  P  +T  P
Sbjct: 610 KYGGLGLGLTISQGIVEQHGGRIWVESPGVAGEGSTFHVWLP-RETEAP 657



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 22/251 (8%), Positives = 62/251 (24%), Gaps = 17/251 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGM-RLCDVSDILHIDPNNHIG-DLLKRQNTW 143
            W   + G     +       G  A + + +    +    +  +         ++     
Sbjct: 193 MWAARSDGSFTYANRAARDYTGIQAEQPLSLNTFLEFVHPVDREAMRAAWVQAIRMGQRV 252

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +  L   +G  +Y      A+P    N   +G+    +                   +
Sbjct: 253 EREFRLRRFDG--VYRWHLARAVPERDENGLLAGW--IAVATDIDDKRRAEEAL----GR 304

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK------VSSLTEYYAHKDDVLKTE 257
           F    +       +        +  +     ++ +       +S L    A  +   +  
Sbjct: 305 FKATLDATLDCVLMFSPDSLTLTYANAGAAKQLASSTDELVGLSVLEVEGAFDEAGFRKL 364

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
             PL++    S          + ++   +     +  +      ++S     +     + 
Sbjct: 365 LAPLVSGTLPSQTYSTSHRRRDGSEVPVEVVLQYVAADGGP-GRFISVARDITERQRAET 423

Query: 318 GENLTPETVDK 328
              L  E  D 
Sbjct: 424 ALRLASEAKDS 434



 Score = 41.9 bits (97), Expect = 0.40,   Method: Composition-based stats.
 Identities = 23/238 (9%), Positives = 60/238 (25%), Gaps = 14/238 (5%)

Query: 94  YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY--GKTTLWP 151
            L   +    K + +   +++G+ + +V           +   L           T+   
Sbjct: 325 TLTYANAGAAKQLASSTDELVGLSVLEVEGAFDEAGFRKLLAPLVSGTLPSQTYSTSHRR 384

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
            +G+ + V + L  +        F       +              +          E K
Sbjct: 385 RDGSEVPVEVVLQYVAADGGPGRF-----ISVARDITERQRAETALR-------LASEAK 432

Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271
               +    +       +         K+   TE    K   +   +   +      L +
Sbjct: 433 DSFLAAASHELRTPLAAAKGHAHLALLKLGGETEAGPGKSLKIINRQIDRMAKLVEDLLD 492

Query: 272 QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
                   L+   ++     L + +++    LS  +   + A            +D+ 
Sbjct: 493 ISRLQAGRLSLELERFDLSHLVHETRDRMAVLSQGHEIHVEASDQLEGTWDRGRLDQV 550


>gi|109898566|ref|YP_661821.1| multi-sensor hybrid histidine kinase [Pseudoalteromonas atlantica
           T6c]
 gi|109700847|gb|ABG40767.1| multi-sensor hybrid histidine kinase [Pseudoalteromonas atlantica
           T6c]
          Length = 1143

 Score =  346 bits (887), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 124/511 (24%), Positives = 205/511 (40%), Gaps = 21/511 (4%)

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY-ANPSFLLLTKYKSVDDIEIAGGLST 368
            L+      E     T++        +    +   AN +F  L   +S D I        
Sbjct: 296 ELTEKARINEARLRATINTSVDGVLGFDSNGIVDSANDAFCQLVGCRSDDIIGQ----DV 351

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
            +   K + N   + ++    D        R   I+    +   +         +  +  
Sbjct: 352 RVLIRKENINEFNQYLIDRTQDNGHALGRGRDALIKHFDGS--LIPIRLAIGHVRLNKES 409

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI---ILSTNRAVSKLF 485
                  +       +R +     Q  S++     GIA   +      ++  + AV  + 
Sbjct: 410 HFVAFMSDLRYRIEMERALREREAQFRSLISNIP-GIAYRCKNMENWPMVFISDAVESIT 468

Query: 486 GYPVED-ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
           GYP ED I   P   F E   P  +     ++L     Q LE     +  + + L     
Sbjct: 469 GYPAEDYISPDPKRHFYEHVHPDDIADITQKVLPHGEFQ-LEYRIYNAKGDIRWLLGYGT 527

Query: 545 IKKLPFSSCYS--LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
                 S        + DI+E K+ +  L  AK  AE+ +S ++ FLA +SHEIRTP+ A
Sbjct: 528 HVDDEESGQRWLDGFIMDITERKEMEQSLLLAKDKAEQAASARAAFLANMSHEIRTPMNA 587

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           IIGFS+++ +    P       ++   I++S   +L ++ND+LD +K++ GK +L     
Sbjct: 588 IIGFSDILLDDAIEP----DQKKHLTTINKSAKSLLHLLNDILDSAKLDKGKFDLEMRDF 643

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPS 721
           SL E V   +S + L A+ K + +  +    +  +       ++Q+  NI+ NAI FT  
Sbjct: 644 SLIEEVDSVVSTLWLGASNKNLYLNVNIDPAVENQFHGAPDRIRQVLTNIVGNAIKFTLE 703

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           GG I I+     +  +   V DTG+GMT  +L      FGQ   S   R  GTGLG  ++
Sbjct: 704 GG-IDINIGVKPSGCIDFSVSDTGIGMTPEQLALVFDAFGQADASMSRRFGGTGLGTTIS 762

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
           K +V+   GK    S   KG+      PL  
Sbjct: 763 KQLVELMGGKISATSEFGKGSCFSFSLPLAP 793



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 53/140 (37%), Gaps = 3/140 (2%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +    K  I   +L + +  + DG+   +  GI+ S N A  +L G   +DI+ +   V 
Sbjct: 295 KELTEKARINEARLRATINTSVDGVLGFDSNGIVDSANDAFCQLVGCRSDDIIGQDVRVL 354

Query: 501 LEQNTPSVMNHYL-TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCYSLT 557
           + +   +  N YL              +  L    +  L+ +R+ I   +L   S +   
Sbjct: 355 IRKENINEFNQYLIDRTQDNGHALGRGRDALIKHFDGSLIPIRLAIGHVRLNKESHFVAF 414

Query: 558 MHDISEWKQEKNKLSHAKKI 577
           M D+    + +  L   +  
Sbjct: 415 MSDLRYRIEMERALREREAQ 434



 Score = 41.2 bits (95), Expect = 0.72,   Method: Composition-based stats.
 Identities = 26/249 (10%), Positives = 65/249 (26%), Gaps = 24/249 (9%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D++G +   ++   + +G  +  +IG  +  +    +I+        L  +    G    
Sbjct: 323 DSNGIVDSANDAFCQLVGCRSDDIIGQDVRVLIRKENIN---EFNQYLIDRTQDNGHALG 379

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREF-----SGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
              +    +   D + +PI            S F  F      R   +     +  + +F
Sbjct: 380 RGRDALIKHF--DGSLIPIRLAIGHVRLNKESHFVAFMS--DLRYRIEMERALREREAQF 435

Query: 205 SHLHEIKKGHSSV-----EKEKYDIFSQQSPPPHLRMKNKVSSLTE----YYAHKDDVLK 255
             L     G +             I            ++ +S   +     + H DD+  
Sbjct: 436 RSLISNIPGIAYRCKNMENWPMVFISDAVESITGYPAEDYISPDPKRHFYEHVHPDDIAD 495

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
             +  L          +   +    +      Y   + +               +     
Sbjct: 496 ITQKVL---PHGEFQLEYRIYNAKGDIRWLLGYGTHVDDEESGQRWLDGFIMDITERKEM 552

Query: 316 DEGENLTPE 324
           ++   L  +
Sbjct: 553 EQSLLLAKD 561


>gi|239906656|ref|YP_002953397.1| putative sensor histidine kinase [Desulfovibrio magneticus RS-1]
 gi|239796522|dbj|BAH75511.1| putative sensor histidine kinase [Desulfovibrio magneticus RS-1]
          Length = 788

 Score =  346 bits (887), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 111/629 (17%), Positives = 210/629 (33%), Gaps = 64/629 (10%)

Query: 238 NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297
           ++ + L    A+  ++   E        E        F  I    +    +  TL     
Sbjct: 157 DEEADLEAMAAYAREIGADEAAFRAALAEVPRMPLARFEKICQALHHFANHLSTL--AVA 214

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKS 356
              +           A     +    E ++  P P F V   G + + N +   LT   +
Sbjct: 215 NFEQAWRIDELRQAQASIKARDRSFSEIIEFLPDPAFAVDRDGRVTFWNKALERLTGIAA 274

Query: 357 VDDIEIA---------GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
            D +            G  + LL        +   P     +D       A +       
Sbjct: 275 ADMLGKGDFAYGAAFYGQPTPLLLDYARGAVSMPDP-RYQVADMAPGEIIAEVTLTAMPG 333

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
                +        ++  +         +  D    +  +         I+E   +G+ +
Sbjct: 334 GLRH-VWAKAVALYDESGQVNGAIEAIRDVTDRERREAALRQSEAMFRGIVETAHEGVWV 392

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
            +        N+ ++ + GY   ++L +  T FL   +                  +   
Sbjct: 393 YDVNYDTTFVNKRMADMLGYASHELLGRNLTEFLPPESQQRAARQQQRRRDG---FSDVF 449

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHA--------- 574
                 ++  +L + I    L               D+S  K  + +L            
Sbjct: 450 EQCIERRDGTMLWVLISASPLQDEHGNFAGSLGMFSDLSAVKAVEAELRAHRQRLEEEVE 509

Query: 575 ----------------KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN---QRF 615
                                +    KS FL+ VSHE+RTPLT+I+GF+++I     + F
Sbjct: 510 ERTRELREQAMELAEANIRLSELDRLKSAFLSTVSHELRTPLTSILGFAKLIGREFGEHF 569

Query: 616 GPLGNP---------RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
            PL            R       +      +  ++ND+LD+++IESG M    + +    
Sbjct: 570 SPLAGDNPALAARGKRIAHNLGVVYGEAERLTRLINDVLDLNRIESGNMQWRDQCIDPVA 629

Query: 667 AVSEAISLVQ-LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725
            + +A+  ++ L A    I  R     + P +L D   + Q+  N+L NA+ FT  G ++
Sbjct: 630 VLHQAVQSIEGLLAQRPEIRFRFLAHTSAPPLLMDPDQLVQVIANLLQNAVKFTERG-EV 688

Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI---PNSQQIRGEGTGLGLPLAK 782
           ++     +   V++ VRD GVG+   +LE     F Q+           +GTGLGL + +
Sbjct: 689 VLEVRAEAEA-VLMTVRDQGVGIPADQLESIFDRFHQVGRGDTIVSPTIKGTGLGLAICR 747

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
            +V    G+ +  S   +G+   +  P+ 
Sbjct: 748 QIVRHYGGRIWAESRLGEGSAFHVRLPMA 776



 Score = 62.7 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/253 (11%), Positives = 62/253 (24%), Gaps = 22/253 (8%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMR---------------LCDVSDILHIDPNN 131
           + +D  G +   ++ L +  G  A  M+G                 L D +      P+ 
Sbjct: 251 FAVDRDGRVTFWNKALERLTGIAAADMLGKGDFAYGAAFYGQPTPLLLDYARGAVSMPDP 310

Query: 132 HIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN 191
                         + TL  + G   +V     A+ +Y  + + +G      +       
Sbjct: 311 RYQVADMAPGEIIAEVTLTAMPGGLRHVW--AKAVALYDESGQVNGA--IEAIRDVTDRE 366

Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP---HLRMKNKVSSLTEYYA 248
              A  ++ +  F  + E       V    YD                   +      + 
Sbjct: 367 RREAALRQSEAMFRGIVETAHEGVWVYDVNYDTTFVNKRMADMLGYASHELLGRNLTEFL 426

Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
             +   +  +      +  S   ++     +            LQ+        L   + 
Sbjct: 427 PPESQQRAARQQQRRRDGFSDVFEQCIERRDGTMLWVLISASPLQDEHGNFAGSLGMFSD 486

Query: 309 PSLSAYFDEGENL 321
            S     +     
Sbjct: 487 LSAVKAVEAELRA 499



 Score = 60.0 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/374 (9%), Positives = 92/374 (24%), Gaps = 43/374 (11%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            W  D +     +++ +   +G  + +++G  L +                 +   +   
Sbjct: 390 VWVYDVNYDTTFVNKRMADMLGYASHELLGRNLTEFLPPESQQRAARQQQRRRDGFSDVF 449

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +  +   +GT   + + ++A P+   +  F+G    G+           A  +       
Sbjct: 450 EQCIERRDGT--MLWVLISASPLQDEHGNFAG--SLGMFSDLSAVKAVEAELRA------ 499

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
                   H    +E+ +  +++     + +      L+E    K   L T  + L T  
Sbjct: 500 --------HRQRLEEEVEERTRELREQAMELAEANIRLSELDRLKSAFLSTVSHELRTPL 551

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
            S L   +         ++             +   +     +           +     
Sbjct: 552 TSILGFAKLIGREFGEHFSPLAGDNPALAARGKRIAHNLGVVYGEAERLTRLIND----- 606

Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
                    V     +   N  +            +    +  LL           + + 
Sbjct: 607 ---------VLDLNRIESGNMQWRDQCIDPVAVLHQAVQSIEGLLAQ---RPEIRFRFLA 654

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
              +    +     +  I    +N++  T           E         +         
Sbjct: 655 HTSAPPLLMDPDQLVQVIANLLQNAVKFTERGEVVLEVRAEAEAVLMTVRDQGVGIPA-- 712

Query: 446 KMEIEVMQLCSILE 459
                  QL SI +
Sbjct: 713 ------DQLESIFD 720


>gi|226227266|ref|YP_002761372.1| two-component hybrid sensor and regulator [Gemmatimonas aurantiaca
           T-27]
 gi|226090457|dbj|BAH38902.1| two-component hybrid sensor and regulator [Gemmatimonas aurantiaca
           T-27]
          Length = 745

 Score =  346 bits (887), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 107/377 (28%), Positives = 182/377 (48%), Gaps = 11/377 (2%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           R+ E+   +L + L+   DGI   +  G I+  N A  +LFG+   +I  +     +   
Sbjct: 13  RRAEMSESRLRATLDTAVDGIVTTDAIGTIVGFNPAAERLFGWDSAEITGRNIKEVMPSR 72

Query: 505 TPSVMNHYLTEILSLDLRQTLEK--ITLGSTKEEKLLSLRIIIKK--LPFSSCYSLTMHD 560
              +        L    ++ +      LG  ++  L+ LR+ + +  L     Y   + D
Sbjct: 73  DQIMQLREQQHGLIARAQEYVGSSSEILGRRRDGSLVPLRLALGRMQLHDEMLYVGFVSD 132

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           ISE +  ++ L  A   AE+ ++ KS FLA +SHEIRTP+ AIIGF+E++          
Sbjct: 133 ISERRAMESSLREAAAQAERAAAAKSTFLANMSHEIRTPMNAIIGFTELLLQSDLTTT-- 190

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
                + + + +S   +L ++ND+LD +++E G M L     SL     +  S ++L A 
Sbjct: 191 --QRNHLSTVRQSSRSLLGLINDILDTTRLEKGGMVLEMIDFSLKGISMQIESSLRLSAQ 248

Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
            + + + TS+  N+P   L D   + Q+  N++ NAI FT  GG + +S +     +VI+
Sbjct: 249 ARGLSLTTSYPANLPEYFLGDPLRILQVLTNLVGNAIKFTERGG-VELSFSSEDE-QVII 306

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            VRDTG+GMT  ++     PF Q   S   R  GTGLG  +++ +V+   G+  + S   
Sbjct: 307 MVRDTGIGMTQEQVASIFTPFTQADASISRRFGGTGLGTTISRQLVELMDGQIEVESALG 366

Query: 800 KGTLIEIIFPLYDTSHP 816
           +G+   +  PL     P
Sbjct: 367 QGSCFRVRLPLAPGKCP 383



 Score = 42.7 bits (99), Expect = 0.29,   Method: Composition-based stats.
 Identities = 12/146 (8%), Positives = 37/146 (25%), Gaps = 13/146 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI------DPNNHIGDLLKRQNT 142
            DA G +   +    +  G  + ++ G  + +V              +  I    +   +
Sbjct: 36  TDAIGTIVGFNPAAERLFGWDSAEITGRNIKEVMPSRDQIMQLREQQHGLIARAQEYVGS 95

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
              +      +G+ + + + L  + ++            G V          +  +    
Sbjct: 96  -SSEILGRRRDGSLVPLRLALGRMQLHDE------MLYVGFVSDISERRAMESSLREAAA 148

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQ 228
           +       K    +    +       
Sbjct: 149 QAERAAAAKSTFLANMSHEIRTPMNA 174


>gi|170740074|ref|YP_001768729.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
 gi|168194348|gb|ACA16295.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
          Length = 927

 Score =  346 bits (887), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 110/754 (14%), Positives = 215/754 (28%), Gaps = 60/754 (7%)

Query: 97  EISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY-GKTTLWPIEGT 155
             ++   + +G+     +G R  D+   +  +    I   L  + TW      +    G 
Sbjct: 67  LYNDAYAEILGDKHPAALGRRFRDIWTEIWAEIEPLIAAALAGEATWSENLPLVMNRRGH 126

Query: 156 NLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHS 215
           +       +  P+        G   F                +  ++    +        
Sbjct: 127 DEQTWFTFSYSPLRDDEGAVVGM--FCACTETTGQVLAEERLRASEEFNRRILASSADCI 184

Query: 216 SVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDF 275
            V      +                  +   +       +          E+       F
Sbjct: 185 KVLSLDGRLEFMSEGGMCAMAVEDFGLIRGAHWPDFWQGEGRDQARAAIREARRGGTGRF 244

Query: 276 HT----INLNQYTKKQYFGTLQNNSKESFEYLSHRNH----PSLSAYFDEGENLTPETVD 327
                              ++        + L+                E E    +  D
Sbjct: 245 QGLATTARGTPRWWDVIVTSIDGPDDRPEKLLAVSRDVTATREAEERVRESEARFRQMAD 304

Query: 328 KCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
             P   ++    G   + N  +   T          A   + +      +   A      
Sbjct: 305 AVPQIVWITDAEGRTEFFNRQWTAYTGAPYAPTTAAAVAAAHVHPDDAQATMAAFGE--- 361

Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ-FPENMPQNGIEPEDVDTRINKR 445
            R            H I+                 +    E +   G   +  D ++ + 
Sbjct: 362 ARRSGGTFLVE---HRIRSAAGTYRWFLVRAEPSRDPVTGEVVRWFGASVDIHDRKLAEE 418

Query: 446 KMEIEVMQLCS-----------ILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDIL 493
            +      L             I + + D +++I+ +     + N A +   G+P  +I 
Sbjct: 419 ALLALNADLEREVVARTRERGLIWQLSLDLLSVIDIDTAAFAAANPAWTAALGWPTSEIE 478

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553
            +P+   +  +           I        L       T++     L  +         
Sbjct: 479 GRPYAELVHPDDVGASLAAFDAIRQG--SPVLHFENRYRTRDGGWRWLSWVAVP--EGGK 534

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKES--SHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
                 D++E K+ + +L  A++   +             V+H+    LT I+G  ++++
Sbjct: 535 LYSVTRDVTEEKERRAELEAAQEALRQSQKMEAMGQLTGGVAHDFNNLLTPIVGSLDMLQ 594

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
            +  G     R         +S      +V  LL  ++    +  L   PV + + V+  
Sbjct: 595 RRGLGG---EREQRLIAGAMQSAERAKTLVQRLLAFAR----RQPLQPIPVDVAKLVTGM 647

Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS--- 728
             LV       +I +     + +P   AD   ++   LN+  NA    P GG + IS   
Sbjct: 648 GDLVASTM-GPQIRVAVDAPDALPPAKADPNQIEMALLNLCVNARDAMPEGGTLRISARA 706

Query: 729 --------TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
                   TT      + L V D+G GM    L +A++PF     S +  G+GTGLGL +
Sbjct: 707 ETVGPGHRTTLRPGPYIRLSVADSGTGMDEATLARAVEPFF----STKGVGKGTGLGLSM 762

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
              +     G   I S P  GT +E+  P  D +
Sbjct: 763 VHGLASQLSGALTIQSRPGLGTNVELWLPRSDAA 796



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 42/441 (9%), Positives = 95/441 (21%), Gaps = 36/441 (8%)

Query: 47  DSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVR-FTWNIDAHGYLKEISEELPKT 105
           D  E+     ++  +         E+   F  +   V    W  DA G  +  + +    
Sbjct: 270 DRPEKLLAVSRDVTATREAEERVRESEARFRQMADAVPQIVWITDAEGRTEFFNRQWTAY 329

Query: 106 IGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDL 163
            G          +                 G+  +   T+  +  +    GT  Y    +
Sbjct: 330 TGAPYAPTTAAAVAAAHVHPDDAQATMAAFGEARRSGGTFLVEHRIRSAAGT--YRWFLV 387

Query: 164 AALPIYSR-NREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHS------- 215
            A P       E    R FG                 L+         +           
Sbjct: 388 RAEPSRDPVTGEVV--RWFGASVDIHDRKLAEEALLALNADLEREVVARTRERGLIWQLS 445

Query: 216 ---------SVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
                              +  +       + +     E     D       +  +    
Sbjct: 446 LDLLSVIDIDTAAFAAANPAWTAALGWPTSEIEGRPYAELVHPDDVGASLAAFDAIRQGS 505

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
             L  +  + T +                       ++            +      + +
Sbjct: 506 PVLHFENRYRTRDGGWRWLSWVAVPEGGKLYSVTRDVTEEKERRAELEAAQEALRQSQKM 565

Query: 327 DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
           +         + G     N     +    S+D ++  G               + +    
Sbjct: 566 EAMGQ----LTGGVAHDFNNLLTPIVG--SLDMLQRRGLGGEREQRLIAGAMQSAERAKT 619

Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
                   A    L  I  +   +  +T +    A+     +      P+ +        
Sbjct: 620 LVQRLLAFARRQPLQPIPVD--VAKLVTGMGDLVASTMGPQIRVAVDAPDALPPAKADPN 677

Query: 447 MEIEVMQLCSIL---EATSDG 464
            +IE+  L   +   +A  +G
Sbjct: 678 -QIEMALLNLCVNARDAMPEG 697


>gi|90423355|ref|YP_531725.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas
           palustris BisB18]
 gi|90105369|gb|ABD87406.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas
           palustris BisB18]
          Length = 775

 Score =  346 bits (887), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 134/637 (21%), Positives = 249/637 (39%), Gaps = 65/637 (10%)

Query: 219 KEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTI 278
            +   I    S    L      S +T+            +  +      SLP Q      
Sbjct: 144 GDATRILEVLSATQPLTASAPQSGITDIALPDGRTAIATQRVI-----RSLPGQVVIIQE 198

Query: 279 NLNQYTKKQYFGTLQNNSKESFEYL--------SHRNHPSLSAYFDEGENLTPETVDKCP 330
           N+    +     ++  ++   F  L                    D         +++  
Sbjct: 199 NVEPIWRSDTALSITLSATTGFVVLILGFAFHWQSTRAREGDLINDAVRGRIDTALNRGR 258

Query: 331 IPFFVYSH--GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388
              + +    G + + + S   +   +S  D+   G ++ L+ +  +        ++   
Sbjct: 259 CGLWDWDLSRGRI-FWSQSMFTMLGLESRSDLLTFGEVNALVKSDDIDLFAIANQLIT-- 315

Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
                I+       +Q    + + +                  GI  +  + +    +  
Sbjct: 316 ---GTISQIDHTFRMQHANGHWIWLRVRCELSQGAGDAGTHLIGIAVDITEHKSLAERTV 372

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPS 507
              ++L   +E   +   + + E  ++  N    +L   P   +     +   +E  T  
Sbjct: 373 EADLRLRDAIETIPEAFVLWDAENRLVLCNSHFQRLHKLPDSAVTPGTSYETVVEVGTMP 432

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQE 567
                 T +          +         K L +    ++      Y     DI+  K+ 
Sbjct: 433 ---EARTRLPEAGHHPPGARTFEAQLDNGKWLHIS---ERRTKDGGYVAVGTDITRIKEH 486

Query: 568 KNKLSHA-----------------------------------KKIAEKESSHKSDFLARV 592
           + KL                                      K  AE  +  KS FLA +
Sbjct: 487 EQKLVENDLRLRATVVDLKRSQATLERQAVELVDLAQKYSEEKNRAEDANQTKSKFLANM 546

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHE+RTPL AIIGFSE++ +  FG LG+ +Y EY + I  SG+ +L+++ND+LD+SKIE+
Sbjct: 547 SHELRTPLNAIIGFSEIMGSGMFGSLGSEKYQEYCHDILTSGHYLLEVINDILDMSKIEA 606

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712
           G+M L  EP  L   +SE++ +V   A+ K++++R    N+IP +LAD R++KQI +N+L
Sbjct: 607 GRMKLDLEPFDLATTLSESLRVVSGRADNKQLMLRADIDNDIP-VLADRRAIKQILVNLL 665

Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           SNA+ FTP GG++ +        +++L + DTG+G+    L +  +PF Q+ +       
Sbjct: 666 SNAVKFTPDGGRVTVRGRVFEE-QIVLLIADTGIGIAKQSLRRLGQPFEQVESQLTKTYH 724

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           G+GLGL +AK++ + + G   + S    GT++ +  P
Sbjct: 725 GSGLGLAIAKSLTNLHGGSMRLRSQLGVGTVVRVALP 761


>gi|237801381|ref|ZP_04589842.1| PAS protein [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|237806664|ref|ZP_04593368.1| PAS protein [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331024240|gb|EGI04297.1| PAS protein [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331027778|gb|EGI07833.1| PAS protein [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 1117

 Score =  346 bits (887), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 114/604 (18%), Positives = 212/604 (35%), Gaps = 42/604 (6%)

Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303
           T     + ++L+T  +           E        +           +          +
Sbjct: 264 TPENGPEPEILQTYAFEREIYGRVWRMEVGAHPQFVVALDPVPAGRVFIIGVLVSLMLTV 323

Query: 304 SHRNHPSLSAYFDE---GENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDD 359
                        +   G+      V+            G +   N +   +  Y   + 
Sbjct: 324 LVGTLLVSRQRKQQFIAGQARLATIVENSSDAIIGEALDGRIITWNRAAEQMFGYDEGEV 383

Query: 360 IEIAGGL-----------STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
           +                   LL      +  +             I  +     I+    
Sbjct: 384 LGSPLAPLLVPPPLVHEDEQLLKRVARGELGSTLETQRLHKSGQLIDVTITCSFIREADG 443

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK-RKMEIEVMQLCSILEATSD-GIA 466
             L    +  +  ++            +       +  ++      L ++L+A+S+  I 
Sbjct: 444 TILGAAKMMHDITDRKRVERYLIEFNAQLEQQVSERTAELSRVAGLLQAVLDASSEVSII 503

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE-QNTPSVMNHYLTEILSL------ 519
           +I+ +G I+  NR    L GY   +++R+            +  +  L+           
Sbjct: 504 VIDPQGQIVVFNRGAELLLGYGNSEMVRRKDPSVFHLPEEVAARSAELSREYGTSIVGID 563

Query: 520 ------DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKN 569
                 D   +  +      ++   + + +I+  +  +      +     DI+E      
Sbjct: 564 VFFYKADREGSETRQWTYVRRDGTTVPVSMIVTPIRTADGEVIGHLGIAQDITERLHRNA 623

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  AK  AE  ++ KS FLA +SHEIRTP+ A+IG S ++ N       N +  +    
Sbjct: 624 ELHAAKASAEAANAAKSLFLANMSHEIRTPMNAVIGISHLLHNTAL----NDQQRQLLTK 679

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           +  +G  +L I+ND+LDI+KIE+G+M L   P S      E   L    A EK +    S
Sbjct: 680 LQIAGRSLLGIINDILDIAKIEAGEMRLENNPFSPRLLFDELSELFSPQAQEKGLRFSVS 739

Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNE--EVILRVRDTG 745
               +P  ++ D   V QI +N++ NA+ FT  GG  + +S    + +   + L V+DTG
Sbjct: 740 VVTPLPGLLIGDALRVNQILMNLVGNALKFTTVGGVDVTVSCESDTADTCWLRLSVQDTG 799

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
            G+    L +   PF Q   S   R  GTGLGL + + + +   G+  + S    G+   
Sbjct: 800 CGIPADVLGQLFSPFTQADASTTRRFGGTGLGLSVVRGLSEQMGGRVGVESELGAGSEFW 859

Query: 806 IIFP 809
           +  P
Sbjct: 860 VSLP 863



 Score = 43.1 bits (100), Expect = 0.19,   Method: Composition-based stats.
 Identities = 16/262 (6%), Positives = 58/262 (22%), Gaps = 28/262 (10%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNTWYGKTTL 149
            G +   +    +  G    +++G  L  +     +   +   +  + + +     +T  
Sbjct: 362 DGRIITWNRAAEQMFGYDEGEVLGSPLAPLLVPPPLVHEDEQLLKRVARGELGSTLETQR 421

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR---------- 199
               G    + + +    I   +    G     ++H                        
Sbjct: 422 LHKSG--QLIDVTITCSFIREADGTILGAAK--MMHDITDRKRVERYLIEFNAQLEQQVS 477

Query: 200 ------------LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247
                       L        E+       + +                   V       
Sbjct: 478 ERTAELSRVAGLLQAVLDASSEVSIIVIDPQGQIVVFNRGAELLLGYGNSEMVRRKDPSV 537

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
            H  + +      L     +S+   + F      + ++ + +  ++ +       +    
Sbjct: 538 FHLPEEVAARSAELSREYGTSIVGIDVFFYKADREGSETRQWTYVRRDGTTVPVSMIVTP 597

Query: 308 HPSLSAYFDEGENLTPETVDKC 329
             +          +  +  ++ 
Sbjct: 598 IRTADGEVIGHLGIAQDITERL 619



 Score = 42.3 bits (98), Expect = 0.30,   Method: Composition-based stats.
 Identities = 21/156 (13%), Positives = 40/156 (25%), Gaps = 20/156 (12%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH----------------IDPNNH 132
           ID  G +   +      +G    +M+  +   V  +                  I   + 
Sbjct: 505 IDPQGQIVVFNRGAELLLGYGNSEMVRRKDPSVFHLPEEVAARSAELSREYGTSIVGIDV 564

Query: 133 IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192
                 R+ +   + T    +GT   VP+ +   PI + + E  G  G  I         
Sbjct: 565 FFYKADREGSETRQWTYVRRDGTT--VPVSMIVTPIRTADGEVIGHLG--IAQDITERLH 620

Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228
             A            +  K    +    +       
Sbjct: 621 RNAELHAAKASAEAANAAKSLFLANMSHEIRTPMNA 656


>gi|20091380|ref|NP_617455.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
 gi|19916516|gb|AAM05935.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
          Length = 726

 Score =  346 bits (887), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 102/378 (26%), Positives = 181/378 (47%), Gaps = 13/378 (3%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS---KLFGYPVEDILRKPF 497
           R+ +++++    +   IL++  + + + +    I   NRA      L     +       
Sbjct: 359 RLAEQELKAREYEKKFILDSLEEMVVLRDPNFNIRWANRAALNNKDLLKAEDKAPEADSP 418

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT 557
                 N P  +     +  + +L  +  K  L  +K      +     K+  +     T
Sbjct: 419 EAQDRYNIPKPLYPLAPDYAAHELTSSEGKTWLLRSK-----PV---CDKIGNTIAVLET 470

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
             +I+E K  + +L  AK+ AE  +  KS FLA +SHE+RTPL +IIGFS+++  + +G 
Sbjct: 471 GVEITERKNYEIELFRAKQDAEVANRAKSAFLANMSHELRTPLNSIIGFSDLLYEKVYGE 530

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
           L N +  +    I  SG  +L+++N++LD+SK+E+G   LH+    L E  +E   ++  
Sbjct: 531 L-NLKQTKAVGNISNSGKHLLNLINEILDLSKVEAGSFELHYSTFWLAEVFAEVRDMIFP 589

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737
           +A  K + I     +N+ R+ AD   + Q+  N+++NA+ F+   G + +      +  +
Sbjct: 590 FATSKGLKIELEIDSNLSRVYADKERILQVLSNLVTNAVKFSNENGCVKVK-AVQMDGFL 648

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
            + V D G+G+   + EK  KPF QI +S   R +GTGLGL L K +V  + G  +  S 
Sbjct: 649 KITVADDGIGIAAADHEKLFKPFSQIDSSFSKRYQGTGLGLALVKEIVQLHGGTVWFESE 708

Query: 798 PAKGTLIEIIFPLYDTSH 815
             KG++     PL   S 
Sbjct: 709 VGKGSVFGFSIPLPGRSE 726


>gi|86750625|ref|YP_487121.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas
           palustris HaA2]
 gi|86573653|gb|ABD08210.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas
           palustris HaA2]
          Length = 627

 Score =  346 bits (887), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 131/603 (21%), Positives = 222/603 (36%), Gaps = 31/603 (5%)

Query: 230 PPPHLRMKNKVSSLTEYYAHKDDVLKTEKY--PLLTSEESSLPEQEDFHTINL-NQYTKK 286
           P       + V+         D +L        L ++   +      F ++     +   
Sbjct: 12  PSRATASADSVALSRIIGERLDALLHPSARYDALASARHRAFIAPRLFGSLAAFAAFPIY 71

Query: 287 QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANP 346
                     +                    G   +   +    +   +     L     
Sbjct: 72  LAMRGAPTALEALAFAWLIAPILLSWFLSRTGRYESAHVLSSLSLTGLILVIATLTGGIT 131

Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
           SF  +     +  +E A   S  + A           V++           A       +
Sbjct: 132 SFAAIWLI--LVPLEAALSASRRVVAFAAMLALGAAAVLIAI--GQLGWLPAAPAGDVSH 187

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
                         A              + +        + +E  +   +    SD I+
Sbjct: 188 GALMAVSVASATLYAAGLAFGSESLTRTSDTL--------LSVEEERYRLLARHMSDVIS 239

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
              R G +   + AV  L G P   +        +           L++       +++E
Sbjct: 240 RHGRNGAVQFISPAVEALIGVPASALSGHGLFDRVHVADRPAYLKALSDAGRGGEARSVE 299

Query: 527 KITLG---STKEEK-----LLSLRIIIKKLP-------FSSCYSLTMHDISEWKQEKNKL 571
                        +      + L +  +            +     M D+++ KQ++  L
Sbjct: 300 FRVRREVARDDRGRPSAAEFIWLEMRCRPFETGVVSAAGEADVVAVMRDVTDRKQQEQAL 359

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
             A+  A +  + KS FLA +SHE+RTPL A+IGFS++I ++    L   R  EYA  I+
Sbjct: 360 EEARAEAGRADATKSRFLATMSHELRTPLNAVIGFSDMILHEDELMLAPERRKEYAQLIN 419

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
            SG  +L +VN +LD+SKIESG   +  EP +   A+    +L+ L A E  I + T   
Sbjct: 420 DSGQHLLSVVNGILDMSKIESGHFEIAPEPFAPRPALLNCCNLLALKARENGIDLVTRAP 479

Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751
            N+P I+ D R+ KQI LN++SNAI FT  GG + +         ++LRV DTGVG+   
Sbjct: 480 ENLPEIVGDPRAFKQILLNLVSNAIKFTERGGTVSVD-AMVEGARLVLRVSDTGVGIAAE 538

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
           +L++   PF Q   + Q R EGTGLGL + K++V  + G   + S   +GT + +  PL 
Sbjct: 539 DLKRIGDPFFQAGTTYQRRHEGTGLGLSIVKSLVGMHGGDIEVKSEVDRGTTVTVSLPLA 598

Query: 812 DTS 814
             +
Sbjct: 599 QPA 601



 Score = 40.0 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 30/257 (11%), Positives = 69/257 (26%), Gaps = 21/257 (8%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGK 146
               +G ++ IS  +   IG  A  + G  L D   +         + D  +       +
Sbjct: 240 RHGRNGAVQFISPAVEALIGVPASALSGHGLFDRVHVADRPAYLKALSDAGRGGEARSVE 299

Query: 147 TTLWPIEGTNLY--------VPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
             +      +          + +++   P        S      +V V R   D +   +
Sbjct: 300 FRVRREVARDDRGRPSAAEFIWLEMRCRPF--ETGVVSAAGEADVVAVMRDVTDRKQQEQ 357

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
            L++         +  +         F            N V   ++   H+D+++   +
Sbjct: 358 ALEE--------ARAEAGRADATKSRFLATMSHELRTPLNAVIGFSDMILHEDELMLAPE 409

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFG--TLQNNSKESFEYLSHRNHPSLSAYFD 316
                ++  +   Q     +N      K   G   +          L +  +       +
Sbjct: 410 RRKEYAQLINDSGQHLLSVVNGILDMSKIESGHFEIAPEPFAPRPALLNCCNLLALKARE 469

Query: 317 EGENLTPETVDKCPIPF 333
            G +L     +  P   
Sbjct: 470 NGIDLVTRAPENLPEIV 486


>gi|39934927|ref|NP_947203.1| sensor histidine kinase [Rhodopseudomonas palustris CGA009]
 gi|39648777|emb|CAE27299.1| sensor histidine kinase with a PAS domain [Rhodopseudomonas
           palustris CGA009]
          Length = 610

 Score =  346 bits (887), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 115/386 (29%), Positives = 182/386 (47%), Gaps = 20/386 (5%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
             + +E  +   +    SD I+  NR G +   + A   L G PV  +        +   
Sbjct: 197 ALLNVEEERYRLLARNMSDVISRHNRNGAVRFISPAAENLLGTPVARLAEHGLFDRVHVA 256

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLG---STKEEK-----LLSLRIIIKKLP------- 549
                   +++        ++E          +  +      + + +  + L        
Sbjct: 257 DRPAYLKAMSDAARGRETGSVEFRIRRDVARDERGRPSAAEFVWVEMRCRPLESNLTTTA 316

Query: 550 ----FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
                 +     M DI+E K  +  L  A+  A++  + KS FLA +SHE+RTPL AIIG
Sbjct: 317 ASNAGETEVVAVMRDITERKIHEQALDQARAEADRADAAKSRFLATMSHELRTPLNAIIG 376

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
           FS++I       LG  R  EYA  I+ SG  +L +VN +LD+SK+ESG   +  EP +  
Sbjct: 377 FSDMILQDDVLMLGPERRKEYAQLINDSGQHLLSVVNGILDMSKMESGSFEIVPEPFAPR 436

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725
            A+    +L+ L A +  I + T    N+P ++ D R+ KQI LN++SNAI FT  GG +
Sbjct: 437 PALLNCCNLLALKARDSGIDLVTRAPENLPEVVGDPRAFKQILLNLVSNAIKFTERGGTV 496

Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
            +S        ++LRV DTGVG+   +L++   PF Q   + Q R EGTGLGL + K++V
Sbjct: 497 TVSAAVE-GTRLVLRVTDTGVGIAEEDLKRLGDPFFQAGKTYQRRHEGTGLGLSIVKSLV 555

Query: 786 DANMGKFYIFSTPAKGTLIEIIFPLY 811
             + G+  + S    GT + +  PL 
Sbjct: 556 RMHGGEIEVQSQIDCGTTVTVSLPLA 581


>gi|66044351|ref|YP_234192.1| PAS [Pseudomonas syringae pv. syringae B728a]
 gi|63255058|gb|AAY36154.1| PAS [Pseudomonas syringae pv. syringae B728a]
          Length = 576

 Score =  346 bits (887), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 116/520 (22%), Positives = 205/520 (39%), Gaps = 46/520 (8%)

Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS-----TLLDAPKLSDNNAIKPVM-- 385
                HG +   N     +  Y S D ++            L+       +    P+   
Sbjct: 48  IATDEHGVIQIFNVGAERMLGYHSEDVVDKITPADISDPAELIIRAAALSHELNTPITPG 107

Query: 386 ---LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
              L       I     L  I+ +     AM        +     +    I  ++   + 
Sbjct: 108 FEALVFKASRGIEDIYELTYIRKDGSRLSAM-VSVTSLRDSAETIIGYLLIGTDNTARKQ 166

Query: 443 NK-------RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
            +       +++  +     S++E+  D + + + +GII   N+ +  L G   ++++  
Sbjct: 167 EEEAQALLDQRLRDQQFYTRSLIESNIDALMMTDPQGIISDVNKQMMALTGRTRDELIGA 226

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--C 553
           P   F     P+  +  +  +LS       E         E ++S               
Sbjct: 227 PCKNFF--TDPASADAAIKRVLSEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRKLKG 284

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
                 D++E K+ +  L       E  S  KS+FLA +SHE+RTPL A+IGFSE +++ 
Sbjct: 285 VFAAARDVTERKRFERTLEEKNIELEHASHMKSEFLATMSHELRTPLNAVIGFSEALRDG 344

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
             G + +     Y   I  SG  +L ++ND+LD+SK+E+G M L  E V LDE +S ++ 
Sbjct: 345 MVGDMTDA-QRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELESVDLDELLSNSLL 403

Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
           +V+  A  + I ++         +  D R  KQI  N+L+NA+ F+  GG + ++     
Sbjct: 404 IVREQAALQHIQLKLETEAEFGELELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRLVP 463

Query: 734 -----------------------NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
                                   + + L V DTG+G+   ++ K  K F QI +    +
Sbjct: 464 ASQAGLIDGDWPTYGFALASGDCEQFLELSVSDTGIGIAQSDMNKLFKAFSQIDSGLARK 523

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            EGTGLGL + K + + + G   + S    G    +  P+
Sbjct: 524 FEGTGLGLAMVKQLTELHGGCVAVASVKDLGARFVVWLPI 563



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/238 (11%), Positives = 66/238 (27%), Gaps = 10/238 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            D  G + ++++++    G    ++IG    +         +  I  +L        + T
Sbjct: 199 TDPQGIISDVNKQMMALTGRTRDELIGAPCKNFFTDP-ASADAAIKRVLSEHKVSDYELT 257

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           +   +GT     +   A   + R+R+  G   F                +  + +  H  
Sbjct: 258 VRAYDGTETV--VSYNAATFHDRDRKLKGV--FAAARDVTERKRFERTLEEKNIELEHAS 313

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK-VSSLTEYYAHKDDVLKTEKYPLLTSEES 267
            +K    +    +              +++  V  +T+        +      LL+    
Sbjct: 314 HMKSEFLATMSHELRTPLNAVIGFSEALRDGMVGDMTDAQRRYIGDIFNSGQHLLS---- 369

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
            + +  D   +     T +     L      S   +  +          E E    E 
Sbjct: 370 LINDILDLSKVEAGMMTLELESVDLDELLSNSLLIVREQAALQHIQLKLETEAEFGEL 427



 Score = 44.6 bits (104), Expect = 0.063,   Method: Composition-based stats.
 Identities = 27/270 (10%), Positives = 70/270 (25%), Gaps = 36/270 (13%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGM-RLCDVSDILHI------------DPNNHIGD 135
            D HG ++  +    + +G ++  ++      D+SD   +             P     +
Sbjct: 50  TDEHGVIQIFNVGAERMLGYHSEDVVDKITPADISDPAELIIRAAALSHELNTPITPGFE 109

Query: 136 LL----KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN 191
            L     R      + T    +G+   +   ++   +        G+   G    N    
Sbjct: 110 ALVFKASRGIEDIYELTYIRKDGS--RLSAMVSVTSLRDSAETIIGYLLIGT--DNTARK 165

Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL------------RMKNK 239
                   LD++   L + +    S+ +   D      P   +            R +++
Sbjct: 166 QEEEAQALLDQR---LRDQQFYTRSLIESNIDALMMTDPQGIISDVNKQMMALTGRTRDE 222

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
           +          D          + SE      +      +  +        T  +  ++ 
Sbjct: 223 LIGAPCKNFFTDPASADAAIKRVLSEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRKL 282

Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
               +     +    F+         ++  
Sbjct: 283 KGVFAAARDVTERKRFERTLEEKNIELEHA 312


>gi|310644836|ref|YP_003949595.1| sensory box histidine kinase yycg [Paenibacillus polymyxa SC2]
 gi|309249787|gb|ADO59354.1| Sensory box histidine kinase YycG [Paenibacillus polymyxa SC2]
          Length = 609

 Score =  345 bits (886), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 86/374 (22%), Positives = 162/374 (43%), Gaps = 25/374 (6%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           R    + E E  +L SIL   SDG+   +  G ++  NR  S + G    ++  +   V 
Sbjct: 251 REALSQNEEEKEKLSSILTNMSDGVVATDDHGRVILVNRRASAMLGVNENEMTGRHIAVL 310

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTM 558
           L  +           + S     TL ++      E  ++ +                  +
Sbjct: 311 LGIDPEET-----EALYSGSSASTLLQLEPAGQDEPIVIRVTFTPIHRREFGITGTIAVL 365

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            D++E ++ +                + +F+A VSHE+RTPLT I  ++E +     G +
Sbjct: 366 QDVTEQEEMETT--------------RREFVANVSHELRTPLTTIRSYAEAL---DDGAM 408

Query: 619 GNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
             P+  E +   I      ++ +V DLL +S+++S +  L  +P  + E + E       
Sbjct: 409 AEPQLAERFVGVIRNETERMIRLVTDLLHLSRLDSNEAPLRMQPADVMEMLDEVADRFSF 468

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737
              E  I         I +++ D   + Q+  N++SNA+ +TP GG I I     +   +
Sbjct: 469 QMKENHIRSGMFVEQGIGKVVIDRDQIDQVLDNLMSNALKYTPEGGSIRIEARRNNEGML 528

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
            + V+DTG+G+   +L++  + F ++  ++     GTGLGL +A+ +V A+ G+ ++ S 
Sbjct: 529 AISVQDTGIGIPKKDLDRIFERFYRVDKARSRNMGGTGLGLSIAREIVKAHGGQIFLESE 588

Query: 798 PAKGTLIEIIFPLY 811
             +GT      P+ 
Sbjct: 589 YGQGTCTTFTLPMS 602



 Score = 57.7 bits (138), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 29/248 (11%), Positives = 67/248 (27%), Gaps = 30/248 (12%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            D HG +  ++      +G    +M G     ++ +L IDP     + L   ++      
Sbjct: 278 TDDHGRVILVNRRASAMLGVNENEMTGRH---IAVLLGIDPEE--TEALYSGSSASTL-L 331

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                G +  + I +   PI+ R    +G     ++       +     +      SH  
Sbjct: 332 QLEPAGQDEPIVIRVTFTPIHRREFGITGT--IAVLQDVTEQEEMETTRREFVANVSHEL 389

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
                      E  D  +   P                 A +   +   +   +    + 
Sbjct: 390 RTPLTTIRSYAEALDDGAMAEP---------------QLAERFVGVIRNETERMIRLVTD 434

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG-------ENL 321
           L       +       +      + +   + F +    NH     + ++G        + 
Sbjct: 435 LLHLSRLDSNEAPLRMQPADVMEMLDEVADRFSFQMKENHIRSGMFVEQGIGKVVIDRDQ 494

Query: 322 TPETVDKC 329
             + +D  
Sbjct: 495 IDQVLDNL 502


>gi|259415385|ref|ZP_05739306.1| PAS/PAC sensor hybrid histidine kinase [Silicibacter sp. TrichCH4B]
 gi|259348615|gb|EEW60377.1| PAS/PAC sensor hybrid histidine kinase [Silicibacter sp. TrichCH4B]
          Length = 756

 Score =  345 bits (886), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 91/393 (23%), Positives = 183/393 (46%), Gaps = 24/393 (6%)

Query: 434 EPEDVDTRINKRKME----------IEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
                   + ++ +E           E  +L  I E  +DG+ +I R+GI+   N   S+
Sbjct: 215 RRNLRSQALQRQALEDAYMRLFDQKQEARRLAMIAEHANDGVMLIGRDGIVRWVNDGFSR 274

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR-QTLEKITLGSTKEEKLLSLR 542
           L GY  ++++ +     L  +        L  I    ++ +      +   K+ + + + 
Sbjct: 275 LTGYSFDELVGRNPGDILNSDNTDP--DTLRTIEEGRIKGKPFRAELINRRKDGEDIWIE 332

Query: 543 IIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
                +   +     Y     D++  K+ + +L  A+  AE+ +  K +FLA +SHE RT
Sbjct: 333 TNQVPVFDDTGRIETYIAVERDVTATKEYERQLKEARLAAEEGARIKEEFLATMSHEFRT 392

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
           P+  +IG +++++        +     YA+ I  S   +L ++ND+LD+S++ +  ++L 
Sbjct: 393 PMNGVIGMTQMLQATDL----SEDQRLYADTILSSSRALLSLINDVLDLSRMNAAGVSLF 448

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIH 717
                L   V +   L+   A EK++ +      ++P  +  D R ++QI +N++ NA+ 
Sbjct: 449 NVDFDLHACVRDTARLLSSQAEEKQLALGVEIDPDVPVWVTGDDRRLRQILVNLVGNAVK 508

Query: 718 FTPSGG-QIIISTTHTSNE-EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           FT SG   I +S   + +E  + + V DTG+G+   +L+   + F Q  N+   +  G+G
Sbjct: 509 FTTSGSVTIRLSAALSGDEIALSIAVEDTGIGIPADKLDCIFERFSQADNAISRKYGGSG 568

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           LGL +++ +  A  G  ++ STP +G+   +  
Sbjct: 569 LGLSISRGLAQAMGGDIHVTSTPGEGSCFTLTL 601



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/255 (10%), Positives = 73/255 (28%), Gaps = 23/255 (9%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTWYGK 146
           I   G ++ +++   +  G    +++G    D+ +  + DP+    I +   +   +  +
Sbjct: 259 IGRDGIVRWVNDGFSRLTGYSFDELVGRNPGDILNSDNTDPDTLRTIEEGRIKGKPFRAE 318

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                 +G +  + I+   +P++        +    +        +     K        
Sbjct: 319 LINRRKDGED--IWIETNQVPVFDDTGRIETY--IAVERDVTATKEYERQLKEARLAAEE 374

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
              IK+   +    ++               N V  +T+     D    +E   L     
Sbjct: 375 GARIKEEFLATMSHEFRTPM-----------NGVIGMTQMLQATD---LSEDQRLYADTI 420

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
            S          ++   ++    G   +     F+  +     +        E      V
Sbjct: 421 LSSSRALLSLINDVLDLSRMNAAGV--SLFNVDFDLHACVRDTARLLSSQAEEKQLALGV 478

Query: 327 DKCP-IPFFVYSHGN 340
           +  P +P +V     
Sbjct: 479 EIDPDVPVWVTGDDR 493



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 43/402 (10%), Positives = 116/402 (28%), Gaps = 35/402 (8%)

Query: 59  QESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYA--FKMIGM 116
           +++  +T+   S++   F P     R+     A    +     +    G       + G 
Sbjct: 2   EQTQPDTDGPLSQHNLRFSPRGLMTRY-----AAIRTRLFYARMAAAAGLTLVLSLIFGP 56

Query: 117 RLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYV-PIDLAALPIYSRNREF 175
               V  + ++  +      L+R              G+      + L    +Y+ +   
Sbjct: 57  LWPMVFFVFYLVADKAETSYLRR------LPERLDKGGSLRQAQRVILLFSLLYAIS--- 107

Query: 176 SGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR 235
               GF ++   ++           +  F+    +    S+     Y      +    + 
Sbjct: 108 --VCGFAVIPYVQMHIQGGEHEVLAEPFFALCVVLGPALSAALD--YRYTPLPAAVRLIM 163

Query: 236 MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN 295
           +     +LT +   + +    +   ++    +    Q  F  +   ++   +     Q  
Sbjct: 164 LSLLPLALTSHTLWQHETHGADLQLMVAGLLAFFFAQIWFLVLVQKRHRNSRRNLRSQAL 223

Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKY 354
            +++ E    R          +         +        +   G + + N  F  LT Y
Sbjct: 224 QRQALEDAYMR-----LFDQKQEARRLAMIAEHANDGVMLIGRDGIVRWVNDGFSRLTGY 278

Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
              + +    G    +     +D + ++ +   R         A L   + + E+    T
Sbjct: 279 SFDELVGRNPGD---ILNSDNTDPDTLRTIEEGRIKGK--PFRAELINRRKDGEDIWIET 333

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
                  +          +E +   T+  +R+++    +L +
Sbjct: 334 NQ-VPVFDDTGRIETYIAVERDVTATKEYERQLK--EARLAA 372


>gi|220910721|ref|YP_002486031.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219867493|gb|ACL47830.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 766

 Score =  345 bits (886), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 111/560 (19%), Positives = 222/560 (39%), Gaps = 31/560 (5%)

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
            LP       +     +  Q    LQ   +   E  ++R   +              T+ 
Sbjct: 55  PLPTDSSIAEVQGLTESFNQMAEQLQQFFQTKVEAEANRQSEARFQQLAAAVPGMIYTLT 114

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
           + P            Y + +   + + +S   +E    +   +     S  + +    + 
Sbjct: 115 QSPDG-----SQKFEYVSSASRTILELESEQALEDINSVIEQIHPDDRSTYDEVSAQSVS 169

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
             +      S    TI  + +                  ++   GI  +  D +  +  +
Sbjct: 170 LME----PFSLSFRTITPSGQLKWVEASS--RPLLNTNGSITWYGILLDVSDRKRAEIAL 223

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
                Q   I+  T+DGI +I+ +      N+     +   + +I+  P +  + Q+   
Sbjct: 224 R----QYERIVANTTDGIILIDTQFRYQIANQTYLLWYNKSIFEIIGFPVSKIIGQDVFE 279

Query: 508 V-MNHYLTEILSLDLRQTLE-KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
                YL   L+ +  ++ E        ++   ++    + +    +    ++ +I+  K
Sbjct: 280 TNFRPYLVRCLAGETIESREWFEIPTLGRQFFSVTYSPYLDENLAIAGIVASLRNITSLK 339

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
             + +L  AK+ AEK S  KS FLA +SHE+RTPL  I+  ++++          P Y E
Sbjct: 340 LAEQELEKAKEEAEKASQAKSLFLANMSHELRTPLNVILIMTQMMNRT---ANKIPEYQE 396

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           Y + I R+ + +L ++ND+LD+ K+E+ K +L     +L E +       +    +K I 
Sbjct: 397 YIDLISRNSDHLLKMINDVLDLFKVEAEKASLENSETNLFELLQSIYVTFKQQCTDKHIQ 456

Query: 686 IRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEE------- 736
           I       +PR IL D++ ++Q+ +N++ NA+ FT  G   + ++   T ++        
Sbjct: 457 INLEIDEKVPRLILVDVQKLQQVLINLIGNAVKFTEHGEITVRVTVELTQDKTKWQDASI 516

Query: 737 -VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            +   V DTGVG+   E+ +    F Q    +Q    GTGLGL +++ +V    G+  + 
Sbjct: 517 PLAFTVEDTGVGIAPEEMNQIFDAFAQAAAGRQ-MTGGTGLGLSISQGLVQLMGGEITVK 575

Query: 796 STPAKGTLIEIIFPLYDTSH 815
           ST   G+    + P+   + 
Sbjct: 576 STLGVGSTFHFVLPVQPVAE 595


>gi|124007263|ref|ZP_01691971.1| PAS [Microscilla marina ATCC 23134]
 gi|123987293|gb|EAY27022.1| PAS [Microscilla marina ATCC 23134]
          Length = 1386

 Score =  345 bits (886), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 116/742 (15%), Positives = 256/742 (34%), Gaps = 48/742 (6%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            ++  G   +++    K +G    +++ + + D++   +      I      Q    G+  
Sbjct: 388  VNDEGRYVDVNPAACKLLGYSKAELLNLSVWDITPGTNQTEGKKIWQTFINQAYLTGEYE 447

Query: 149  LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
            +   +GT      +  A+P                +                 +      
Sbjct: 448  VICKDGT--RRITEFHAVP------NIQAGLHLSNLQDITGRKAMEKALADTTRDLKEAV 499

Query: 209  EIKKGHSSVEKE---KYDIFSQQSPPPHLRMKNKVSSLTE--YYAHKDDV--LKTEKYPL 261
            +                +   +         ++  ++  +     H DD   L  +   +
Sbjct: 500  QAGNVGLWYWDLHTNTVEYSPEWKKQLGYAEEDVFNTFEDFTSRVHPDDQPLLNAKIAEV 559

Query: 262  LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY----FDE 317
            +  E   +         +              N +         +   + S        E
Sbjct: 560  MAGEVQKIEWSFRLRRKDDFYCWVSLQGAAFTNAAGNLVRIKGTQLDITESKQMLQDLKE 619

Query: 318  GENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
             EN     +    +  + ++   G + + N  +  +  Y   +          +   P+ 
Sbjct: 620  SENRLELALSSAGLGTWDWNLQTGEIIF-NERWAKILGYTPEEIAPNISTWEKIRVHPED 678

Query: 376  SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
                 ++  +    +            +  + +    +         +    +   G   
Sbjct: 679  MP--RVEQALSDHLEGKTTIYREEQRLMTKSGK--WVLDTGKVFVRAKHGAPLRAVGTCL 734

Query: 436  EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-- 493
            +  + + N+ +++    +     EA S G+   N +      +  + ++FG   +     
Sbjct: 735  DIDERKRNEEELKSLNHKFQLAYEAASIGVWEHNYKTEQSIWDDKMYEIFGVSRQTFKTE 794

Query: 494  -RKPFTVFLEQNTPSVMNHYLTEILSLDLR-QTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
             +      +  +  + +   +     L +  Q  E   +    + K L     I+     
Sbjct: 795  KQSWIEQLVHPDDRNRLKEEIATFFHLGITIQENEFRVITPGGKTKYLKSSAYIEYDNSG 854

Query: 552  SCYSLTM--HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
            +    T    D++  K+ + K   A K          +FLA +SHEIRTPL  +IGF ++
Sbjct: 855  NPLFGTGLSIDLTYIKEAEAKAKQASKAKS-------EFLANMSHEIRTPLNGVIGFVDL 907

Query: 610  IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
            +         N    EY   + +S + +LDI+ D+LD SKIE+GKM +      L   ++
Sbjct: 908  LLETSL----NESQKEYLKTVHQSAHTLLDIITDILDFSKIEAGKMEISITQTDLMHLIN 963

Query: 670  EAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG---QI 725
            + +S+V+    +K++ +    ++++P+ I AD    KQI  N++SNA+ FT +G    ++
Sbjct: 964  QVVSVVKYTVYQKKLELLLDLSDDLPQFIYADDVRFKQILTNLMSNAVKFTEAGEVVLKV 1023

Query: 726  IISTTHTSNEEV-ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
             +      NE +    V+DTGVG+   +  K ++ F Q   S   +  GTGLGL +   +
Sbjct: 1024 ELLKQLPDNEAIFRFSVKDTGVGIAPEKQSKVLEAFSQEDASTTRKFGGTGLGLTITNKL 1083

Query: 785  VDANMGKFYIFSTPAKGTLIEI 806
            +     +  + S P +G++   
Sbjct: 1084 LKLMESRLKLKSVPGEGSIFYF 1105



 Score = 98.2 bits (243), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 33/274 (12%), Positives = 79/274 (28%), Gaps = 14/274 (5%)

Query: 313 AYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
               E +       +       + +     +  AN + + L  +   +           L
Sbjct: 240 QQVTEHQGKYQALFELASDAIMLINPVSREIIDANQATVQLLGHSKKEL--------QKL 291

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
           +   +         +   + +      ARL T+ W  +    +      K    P     
Sbjct: 292 NRNDIIAAEVRDETLQNWTKQLAEKEEARLDTV-WVNKEGKTILVEVLGKIIHLPGEEVL 350

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490
             I  +  +    +++++   +   S+ E   D I ++N EG  +  N A  KL GY   
Sbjct: 351 MLIGRDRTEYIKIQQELQQSHLIYQSLFENALDAILLVNDEGRYVDVNPAACKLLGYSKA 410

Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
           ++L             +         ++     T E   +      ++            
Sbjct: 411 ELLNLSVWDITPGTNQTEGKKIWQTFINQAYL-TGEYEVICKDGTRRIT--EFHAVPNIQ 467

Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
           +  +   + DI+  K  +  L+   +  ++    
Sbjct: 468 AGLHLSNLQDITGRKAMEKALADTTRDLKEAVQA 501



 Score = 93.9 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 50/481 (10%), Positives = 122/481 (25%), Gaps = 36/481 (7%)

Query: 115 GMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNRE 174
           G  L D +  +          LL+ + ++  K                    P++  N +
Sbjct: 169 GKHLKDFAPEMVYQALLDKMHLLESKQSFSHKVK-------IKGFTFTNVYQPVFDENGQ 221

Query: 175 FSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH-SSVEKEKYDIFSQQSPPPH 233
                   I +     +  +        K+  L E+       +     +I         
Sbjct: 222 LDSI--IIITNNVTRLHHYQQQVTEHQGKYQALFELASDAIMLINPVSREIIDANQATVQ 279

Query: 234 L--RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291
           L    K ++  L        +V                  + D   +N    T       
Sbjct: 280 LLGHSKKELQKLNRNDIIAAEVRDETLQNWTKQLAEKEEARLDTVWVNKEGKTILVEVLG 339

Query: 292 ----LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANP 346
               L               +  +     +   +     +        V   G     NP
Sbjct: 340 KIIHLPGEEVLMLIGRDRTEYIKIQQELQQSHLIYQSLFENALDAILLVNDEGRYVDVNP 399

Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
           +   L  Y   + + ++    T               +                + +   
Sbjct: 400 AACKLLGYSKAELLNLSVWDITPGTNQTEGKKIWQTFINQAYLTGE--------YEVICK 451

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
                   F                    +    +  ++ +      L   ++A + G+ 
Sbjct: 452 DGTRRITEFHAVPNIQAGLHLSN----LQDITGRKAMEKALADTTRDLKEAVQAGNVGLW 507

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
             +     +  +    K  GY  ED+    + FT  +  +   ++N  + E+++ ++++ 
Sbjct: 508 YWDLHTNTVEYSPEWKKQLGYAEEDVFNTFEDFTSRVHPDDQPLLNAKIAEVMAGEVQK- 566

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH----DISEWKQEKNKLSHAKKIAEK 580
           +E       K++    + +       ++   + +     DI+E KQ    L  ++   E 
Sbjct: 567 IEWSFRLRRKDDFYCWVSLQGAAFTNAAGNLVRIKGTQLDITESKQMLQDLKESENRLEL 626

Query: 581 E 581
            
Sbjct: 627 A 627



 Score = 55.0 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 29/374 (7%), Positives = 74/374 (19%), Gaps = 21/374 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            W  D H    E S E  K +G     +      D +  +H D    +   +        
Sbjct: 506 LWYWDLHTNTVEYSPEWKKQLGYAEEDVF-NTFEDFTSRVHPDDQPLLNAKIAEVMAGEV 564

Query: 146 KTTLW---PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD- 201
           +   W        + Y  + L      +        R  G               K  + 
Sbjct: 565 QKIEWSFRLRRKDDFYCWVSLQGAAFTNAAGNLV--RIKGTQLDITESKQMLQDLKESEN 622

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV----------SSLTEYYAHKD 251
           +    L     G      +  +I   +     L    +             +      + 
Sbjct: 623 RLELALSSAGLGTWDWNLQTGEIIFNERWAKILGYTPEEIAPNISTWEKIRVHPEDMPRV 682

Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
           +   ++     T+               +    K           +     L        
Sbjct: 683 EQALSDHLEGKTTIYREEQRLMTKSGKWVLDTGKVFVRAKHGAPLRAVGTCLDIDERKRN 742

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
                   +      +   I  + ++        +     +                  L
Sbjct: 743 EEELKSLNHKFQLAYEAASIGVWEHNYKTEQSIWDDKMYEIFGVSRQTFKTEKQSWIEQL 802

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
             P   +    +    +      I        +      +  +    + + +     +  
Sbjct: 803 VHPDDRNRLKEEIATFFHL---GITIQENEFRVITPGGKTKYLKSSAYIEYDNSGNPLFG 859

Query: 431 NGIEPEDVDTRINK 444
            G+  +    +  +
Sbjct: 860 TGLSIDLTYIKEAE 873


>gi|78049360|ref|YP_365535.1| two-component system sensor histidine kinase-response regulator
           hybrid protein [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78037790|emb|CAJ25535.1| two-component system sensor histidine kinase-response regulator
           hybrid protein [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 678

 Score =  345 bits (886), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 98/537 (18%), Positives = 195/537 (36%), Gaps = 41/537 (7%)

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS---HGN------LFYA 344
           + S  S         P+  A       +  E        F V      G       +   
Sbjct: 4   DLSTPSSSPTLAAALPAAIAEPFLDPAMYHEIFHNIDAGFCVIDMVFDGEQAVDYVIRTT 63

Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
           N +F   T             +  LL      +                I    +   ++
Sbjct: 64  NGAFERYTGLSPNAL---NVSIRNLLPE---HEQEWFDRYGHVARTGNRIHFEMQAKALK 117

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
                     +         PE      +  +  + +  +R++     +  ++ +     
Sbjct: 118 R--------WYSVDAFRVGQPEQARVAILFMDITERKRVERELAESEARFSALADGLPMP 169

Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
           + +++ +G++   N A  + FG  +       ++  L  +             SL  ++ 
Sbjct: 170 VWVLDAQGVVRFVNSAYGEFFGLDISSGTVSAWSELLHPDDLPTFQ--FELAASLQEQRG 227

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH----DISEWKQEK-------NKLSH 573
           L  +      + +   + +       +    + +     D++E ++ +            
Sbjct: 228 LRALVRARRHDGQWRWIEMTATPRYSADGRFIGLAGSSPDVTEQREIELAREQLLESERS 287

Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
           A+  AE  +  K +FLA +SHE+RTPLT I+G+SE++  +         Y +  + I  S
Sbjct: 288 ARNEAESMARLKDEFLATLSHELRTPLTTILGWSELLLQRVEEGQP---YYKGLSVIASS 344

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693
                 +++D+LD+S +  GK+ L  E + L E V EA++  +L A  K  ++       
Sbjct: 345 ARAQKRLISDMLDLSSMLLGKVQLEVESLDLVEQVREALNTQELAAEGKDQVLELHVPPT 404

Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753
              +L D   ++Q+  N+LSNAI FTP+ G+I +      +  +++ V D+G G+    L
Sbjct: 405 PCLVLGDATRLQQVLWNLLSNAIKFTPAHGRIDVKIE-RDDGHLVVSVCDSGDGIAAEFL 463

Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFP 809
                 F Q   +   +  G GLGL + + +V+ + G+    S    KG    +  P
Sbjct: 464 PHLFGRFRQADGTTTRQHGGLGLGLAIVQQLVEMHGGQVGATSGGRGKGATFTVRLP 520



 Score = 73.5 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 47/463 (10%), Positives = 117/463 (25%), Gaps = 48/463 (10%)

Query: 54  FTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM 113
           F D  +         +SE  F        +   W +DA G ++ ++    +  G      
Sbjct: 139 FMDITERKRVERELAESEARFSALADGLPMP-VWVLDAQGVVRFVNSAYGEFFGLDISSG 197

Query: 114 IGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172
                 ++     +      +   L+ Q            +G   +  I++ A P YS +
Sbjct: 198 TVSAWSELLHPDDLPTFQFELAASLQEQRGLRALVRARRHDG--QWRWIEMTATPRYSAD 255

Query: 173 REFSGFRGFG-IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231
             F G  G    V   R     R      ++   +  E        E         ++P 
Sbjct: 256 GRFIGLAGSSPDVTEQREIELAREQLLESERSARNEAESMARLKD-EFLATLSHELRTPL 314

Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291
             +   +++               +       +++  + +  D  ++ L +   +     
Sbjct: 315 TTILGWSELLLQRVEEGQPYYKGLSVIASSARAQKRLISDMLDLSSMLLGKVQLEVESLD 374

Query: 292 LQN---NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSF 348
           L      +  + E  +      L  +      L      +     +      + +  P+ 
Sbjct: 375 LVEQVREALNTQELAAEGKDQVLELHVPPTPCLVLGDATRLQQVLWNLLSNAIKF-TPAH 433

Query: 349 LLLTKYKSVDDI-------EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401
             +      DD        +   G++                    +     +  +    
Sbjct: 434 GRIDVKIERDDGHLVVSVCDSGDGIAAEFLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQ 493

Query: 402 TIQWNREN-----------SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR----K 446
            ++ +              +     +P    +Q      +             +     +
Sbjct: 494 LVEMHGGQVGATSGGRGKGATFTVRLPEHIPDQAKRPRRELRRRLMSEQIVEARALNGLR 553

Query: 447 MEIEVMQ------LCSILE----------ATSDGIAIINREGI 473
           +     Q      L  +LE          + +D +A+I+  G 
Sbjct: 554 LLAVEDQPDMLDYLRRLLEEQGAEVVVAGSATDALALIDHRGH 596


>gi|87307297|ref|ZP_01089442.1| sensory transduction histidine kinase [Blastopirellula marina DSM
           3645]
 gi|87290037|gb|EAQ81926.1| sensory transduction histidine kinase [Blastopirellula marina DSM
           3645]
          Length = 1138

 Score =  345 bits (886), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 131/654 (20%), Positives = 242/654 (37%), Gaps = 34/654 (5%)

Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH 233
           EF G  GFG++   RV+ D        ++  +    + +   +     Y I        +
Sbjct: 329 EFPGAIGFGMIQ--RVERDDIDSFVATERSDNAPEFMVRSLGA-ASVAYIIQHIYPLEDN 385

Query: 234 LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293
                          +  +       P +T       +              K       
Sbjct: 386 RAAWGYDIGSESVRRNAIEKAIRSGDPTITGMIHLRQDDVMRAGFLYFVPIYKNGTNPQT 445

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTK 353
              +E+           L    D   +L  + +D     F ++         P +     
Sbjct: 446 PAERETNLAGVLYAPIILERSLDYMGDLLDDGLD-----FEIFDGDKATQRTPLYDHDRH 500

Query: 354 YKSVDDIEIAGGL-STLLDAPKLSDNNAIKPVMLYRSDRTCIAASA-RLHTIQWNRENSL 411
                DIE A    +  +           +   +  S      A   R+         + 
Sbjct: 501 LDQFVDIESAKAAYARRMFFHSSPIMVGGRTWTIVTSTTAPFHAQVDRVTPAALGLGGAT 560

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME----IEVMQLCSILEATSDGIAI 467
               +     +          +  +         K+      E  +L  I+  TS+G+ I
Sbjct: 561 LSLLLAGIIWSMGLSQTRAMALAEDMTQELRASEKIATQSAEEAERLAKIIRRTSNGVII 620

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL-DLRQTLE 526
            + +G I   N   +++ GY +E+ L K     L           +  +     L+    
Sbjct: 621 TDIDGKIEWINDGFTRISGYQLEEALGKSPRDLLYGPN--SNLDAIARLEDAFRLQAPTN 678

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISE-------WKQEKNKLSHAK 575
              +   K+ +   +   I  L  +S     + +  +DI+E        K    +L  A 
Sbjct: 679 SEIVNYAKDGREYVVATEIAPLLDTSGTLTGFMMIENDITEKCAAEARLKAVNAELMLAH 738

Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
           + AE+ S  KS+FLA +SHEIRTP+TAI+GFS+++  Q    +      +    I R+GN
Sbjct: 739 QDAERASKIKSEFLANMSHEIRTPMTAIVGFSDLLLEQ---GMSEEEKRKSVGTIQRNGN 795

Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695
            +L+++ND+LD+SK+ESGK ++    +   E + +   L+   A  +   ++      +P
Sbjct: 796 HLLELINDILDLSKVESGKFDIELRDMDPTEVIRDVHELLNERAITQENRLQIELKGALP 855

Query: 696 R-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-SNEEVILRVRDTGVGMTNYEL 753
           + I +D   +KQ   N++ NAI FT   G + +      ++E++I +V D+G+GM+  +L
Sbjct: 856 QTIHSDSTRLKQALFNLVGNAIKFT-QNGVVKVIAECDFAHEQMIFQVIDSGIGMSPEQL 914

Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           E+  +PF Q   S   +  GTGLGL + K + +   G   + S    G+   + 
Sbjct: 915 EQIFQPFRQADASTTRKFGGTGLGLTITKQIAELLGGDVRVESQSGVGSSFTLR 968



 Score = 61.2 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 33/254 (12%), Positives = 73/254 (28%), Gaps = 15/254 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL--HIDPNNHIGDLLKRQNTWYGK 146
            D  G ++ I++   +  G    + +G    D+      ++D    + D  + Q     +
Sbjct: 621 TDIDGKIEWINDGFTRISGYQLEEALGKSPRDLLYGPNSNLDAIARLEDAFRLQAPTNSE 680

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
              +  +G    V  ++A  P+   +   +GF    I +         A  K ++ +   
Sbjct: 681 IVNYAKDGREYVVATEIA--PLLDTSGTLTGFM--MIENDITEKCAAEARLKAVNAELML 736

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
            H+  +  S ++ E     S +   P   +         +     +   +E+    +   
Sbjct: 737 AHQDAERASKIKSEFLANMSHEIRTPMTAIVG-------FSDLLLEQGMSEEEKRKSVGT 789

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSK--ESFEYLSHRNHPSLSAYFDEGENLTPE 324
                      IN      K   G      +  +  E +   +         +   L  E
Sbjct: 790 IQRNGNHLLELINDILDLSKVESGKFDIELRDMDPTEVIRDVHELLNERAITQENRLQIE 849

Query: 325 TVDKCPIPFFVYSH 338
                P      S 
Sbjct: 850 LKGALPQTIHSDST 863


>gi|71907525|ref|YP_285112.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
 gi|71847146|gb|AAZ46642.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
          Length = 865

 Score =  345 bits (886), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 106/521 (20%), Positives = 190/521 (36%), Gaps = 42/521 (8%)

Query: 317 EGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
              ++    ++  P   ++  S G     N  F         + +              L
Sbjct: 203 RERSMLRTLINTLPDLIWLKDSKGVYLACNHRFEQFFGASEPEIVGK---TDYDFVDKAL 259

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
           +D      +         +           +  +   +        ++  + +   GI  
Sbjct: 260 ADFFRAHDLAAMEKKAPSVNEEEITFA---DDGHRELLITTKIPMLDENSQLVGVLGIGH 316

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR- 494
           +    ++ ++ +E    QL  +LE    G    +     +S N   + + GY  ++I + 
Sbjct: 317 DTTQQKMAEQALENSEQQLRFVLEGAELGFWDWDIAAGTVSRNERWANMLGYSHDEIRQT 376

Query: 495 -KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS- 552
            + +T F+  +  S     +   L                K+  ++ +    K +   + 
Sbjct: 377 TQQWTDFIFPDDRSRAWDSINAALE-GRASMHRLEYRMLRKDGSIIWILDQAKVMQRDAQ 435

Query: 553 ----CYSLTMHDISEWKQEKNKLSHAKK------------------IAEKESSHKSDFLA 590
                   T  DISE K    +L+  ++                   AE  +  KS FLA
Sbjct: 436 GKPLRMCGTHTDISEIKATHEELTQHRRHLEKLVGERTHELTLAKEAAETATIAKSAFLA 495

Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650
            +SHEIRTPL AI G + +++     P       +  + I+ +G  +L+I+N +LD+SKI
Sbjct: 496 NMSHEIRTPLNAITGMTHILRRSGLSP----EQTDKLDKIEGAGKHLLEIINAILDLSKI 551

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710
           E+GK+ L   PV +   +    S++   A    I I          +L D   ++Q  LN
Sbjct: 552 EAGKLTLESVPVHVGSLLENVASMLSQRARALGIAINLEPITISSPLLGDPTRLQQALLN 611

Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
             +NA+ FT  G  I +     +  E    +   V DTGVG+    L K    F Q  NS
Sbjct: 612 YATNALKFTEQG-HITLRVKEEAQTEERVTLRFEVSDTGVGIAPNILPKLFGTFEQADNS 670

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
              +  GTGLGL + K + +   G   + S   +G+     
Sbjct: 671 TTRKYGGTGLGLAITKKLAELMGGTVGVSSIEGQGSTFWFS 711



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/313 (10%), Positives = 82/313 (26%), Gaps = 20/313 (6%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID--PNNHIGDLLKRQNT 142
             W  D+ G     +    +  G    +++G    D  D    D    + +  + K+  +
Sbjct: 218 LIWLKDSKGVYLACNHRFEQFFGASEPEIVGKTDYDFVDKALADFFRAHDLAAMEKKAPS 277

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
              +   +  +G    +      +P+   N +  G  G G  H            +  ++
Sbjct: 278 VNEEEITFADDGHRELLITT--KIPMLDENSQLVGVLGIG--HDTTQQKMAEQALENSEQ 333

Query: 203 KFSHLHE-IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA-----HKDDVLKT 256
           +   + E  + G    +     +   +     L   +     T           D     
Sbjct: 334 QLRFVLEGAELGFWDWDIAAGTVSRNERWANMLGYSHDEIRQTTQQWTDFIFPDDRSRAW 393

Query: 257 EKYPLLTSEESSLPEQE-DFHTINLNQYTKKQYFGTLQNNS-KESFEYLSHRNHPSLSAY 314
           +         +S+   E      + +          +Q ++  +           S    
Sbjct: 394 DSINAALEGRASMHRLEYRMLRKDGSIIWILDQAKVMQRDAQGKPLRMCGTHTDISEIKA 453

Query: 315 FDEGENLTPETVDKCP------IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
             E        ++K        +     +      A  +FL    ++    +    G++ 
Sbjct: 454 THEELTQHRRHLEKLVGERTHELTLAKEAAETATIAKSAFLANMSHEIRTPLNAITGMTH 513

Query: 369 LLDAPKLSDNNAI 381
           +L    LS     
Sbjct: 514 ILRRSGLSPEQTD 526


>gi|117925825|ref|YP_866442.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117609581|gb|ABK45036.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 801

 Score =  345 bits (886), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 99/387 (25%), Positives = 181/387 (46%), Gaps = 21/387 (5%)

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIIN--REGIILSTNRAVSKLFGYPVEDILRKPFTV 499
             +R ++    +  +++E +   + +        +   NR+ + LFGY V D+       
Sbjct: 256 QERRSLQQSESRFRTLVETSPIPMLVTRAAPNQRVALMNRSFTDLFGYTVADVPDIHHWW 315

Query: 500 FLEQNTPSVMNHYLT---------EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
            L    P+                 +    +   +      +    + + + + +     
Sbjct: 316 PLAYPDPTYRQEIQQLWQARVEEMSLKKTQIMHPVTANVTCNNGNIRFIEVHMSVI---- 371

Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
                +   D++  KQE  +L  AK+ AE  +  K DFLA +SHEIRTP+  ++G  EV+
Sbjct: 372 DDHALVIFQDLTHRKQESEELRQAKEAAEAANQAKGDFLAVMSHEIRTPMNVMLGMVEVL 431

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
           +        +    E  + + ++G  +L ++N +LD+SK+++G + L  E ++L E + E
Sbjct: 432 QESTL----DQEQQEQLHSVQKAGKNLLALINQILDLSKLDAGHLQLQPEALNLHELIKE 487

Query: 671 AISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
            + LV + A+EK +L+      ++P  ILAD   ++QI  N+L NAI FT  G  + I+ 
Sbjct: 488 VVGLVAVLASEKNLLLSHQIDTSVPQWILADELRLRQILFNLLGNAIKFTEKGS-VNITL 546

Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
           +    +++ L +RDTG+G+         +PF Q   +   R  GTGLGL L++ +V+   
Sbjct: 547 SMRDPQQLALVIRDTGIGVDPAHHHAIFEPFTQQDGTITRRFGGTGLGLTLSRRLVELMH 606

Query: 790 GKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           G+  + S    GT  EI+ P+  T  P
Sbjct: 607 GQIRMDSQLGCGTQFEILLPVERTQPP 633


>gi|284165631|ref|YP_003403910.1| PAS/PAC sensor signal transduction histidine kinase [Haloterrigena
           turkmenica DSM 5511]
 gi|284015286|gb|ADB61237.1| PAS/PAC sensor signal transduction histidine kinase [Haloterrigena
           turkmenica DSM 5511]
          Length = 767

 Score =  345 bits (886), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 106/752 (14%), Positives = 245/752 (32%), Gaps = 45/752 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + +DA      I++   +  G     ++G  +  V D             L+       
Sbjct: 34  VYQLDAAERFVTINDRFVELTGYARDALLGEHVSLVFDETDRQRVKRELSELRTTGGRRN 93

Query: 146 KTTLWPI-EGTNLYVPIDLAALPIYSRNREFSGF---RGFGIVHVNRVDNDPRALGKRLD 201
           +T    +       +  +L   P+        G    R       NR         +R +
Sbjct: 94  ETIETAVHTADGETIRCELRVHPLSDEVHGSVGVLQERSEPTSDGNRTGRVEAEGRRRNE 153

Query: 202 KKFSHLHEIKKGHSSVEKEKYD-IFSQQSPPPHLRMKNKVSSLTEYYAHKD----DVLKT 256
             F  L E       +            S    +  +++     +     D    D  + 
Sbjct: 154 VTFRQLVEHLDQVVWMSTADMRETIYVNSAFEEVYGRDRERLYEDPEVLLDAVHPDDREL 213

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
            +  L T  E     +      + +          + ++    F  +      +     +
Sbjct: 214 LRSELETEVEEPHVIEYRIVQPDGDVRWIHDRVVPVYDDDGNVFRIVGEAMDITERKEHE 273

Query: 317 EGENLTPETVDKCPIPFFV------YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
                T   ++       V           +    PSF               G      
Sbjct: 274 RELEDTKSQLEAATEAGAVGTWEWHVRTDEMIVG-PSFARTFGVNPEAA--RDGVSLDRF 330

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
                 D+       +     TC    +  + ++        +      +  +  E M  
Sbjct: 331 VEAVHEDDRDRVAAEIEEVVETCGEYESE-YRVRDADGELRWVVARGHIECAENGEAMTF 389

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490
            G   +  + +  + ++E    QL ++ E    G+ + + +G  +  N    +++G  V 
Sbjct: 390 PGALTDITERKRAELRLEQTTEQLATLFEILPVGVVVADSDGGFVEANETAKEIWGGDVF 449

Query: 491 DIL----RKPFTVFLEQNTPSVMNHYL---TEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           D+      + +T +  ++   V          +   ++               +++    
Sbjct: 450 DVESVAEYERYTGWWAESDEPVEPEEWTMSRVLEGEEVTDPDIYEIETVDGARRIIQAEG 509

Query: 544 IIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
           +             +T+ DI+E +         ++  E+ +     F    SH+++ PL 
Sbjct: 510 MPVWDADGDVTRGVVTISDITERRA-------YQRKLEESNERLEQFAYAASHDLQEPLR 562

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
            +  + + +   R+    +    E+  +     + +  +++ LL+ S++E+      FEP
Sbjct: 563 MVTSYLQ-LLESRYADAFDEDGREFLEFAVDGADRMRAMIDGLLEYSRVETRGDP--FEP 619

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
             L++ + +  S +QL   E    I T    ++PR+  D+  ++Q+  N+LSNAI ++  
Sbjct: 620 TDLNDVLEDVRSDLQLQIEESGAEITTE---DLPRVNGDVDQLRQLFQNLLSNAIIYSGE 676

Query: 722 GG-QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
           G  ++ +       + V + V D G+G+   + E+    F ++ +  +   EGTG+GL L
Sbjct: 677 GSPRVRVDARRRGRQWV-ISVEDNGIGIDPEDQERIFTVFDRLHS--REEYEGTGIGLAL 733

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
            + +V+ + G+ ++ S    G    +  P   
Sbjct: 734 CERIVERHGGEIWVDSEAGDGATFSMTLPAAR 765



 Score = 62.7 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/113 (13%), Positives = 44/113 (38%), Gaps = 1/113 (0%)

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
            +  +++    DG+  ++     ++ N    +L GY  + +L +  ++  ++     +  
Sbjct: 21  RRYQTLVNEIDDGVYQLDAAERFVTINDRFVELTGYARDALLGEHVSLVFDETDRQRVKR 80

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISE 563
            L+E+ +   R+     T   T + + +   + +  L          + + SE
Sbjct: 81  ELSELRTTGGRRNETIETAVHTADGETIRCELRVHPLSDEVHGSVGVLQERSE 133


>gi|170726058|ref|YP_001760084.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
 gi|169811405|gb|ACA85989.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
          Length = 1168

 Score =  345 bits (886), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 116/520 (22%), Positives = 208/520 (40%), Gaps = 49/520 (9%)

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIE--------- 361
           +   +         +      F +    G +   NP+   L  Y   + +          
Sbjct: 230 AKELEGANTRLNTILSAAVDGFIIIDVYGVITQVNPAICRLFGYMEDEIVGKNVSIFMPS 289

Query: 362 -----IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
                    L   ++  + +     +  M    D         +  +   +E        
Sbjct: 290 YERHTHNAFLKRFIEGKREAVERNGREFMALHKDGNLFPIELSISKMTIEKE-------- 341

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476
                      +   G+  +  D +  + + +     L + LEA+ D +  I+  G I  
Sbjct: 342 -----------IMLLGLVKDLSDIKQKEIEAKRTESILLATLEASQDALITIDIAGKIQE 390

Query: 477 TNRAVSKLFGYPVEDILRKPFTV-FLEQNTPSVMNHYLTEILSLDLRQTLEK--ITLGST 533
            N A S+LFG+  E ++ +            +     L E         ++K    +   
Sbjct: 391 FNEAASQLFGHDKESVIGEQLAEVIFTDIEKACFKEGLEEFRQTGDGPAIKKSIELMSMK 450

Query: 534 KEEKLLSLR--IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
            +   L +   +I  +L      +  +HDIS+  + + +L +AK+ AE  S  KS FLA 
Sbjct: 451 LDGSTLPIELKMIPVQLGDDIFLTAFIHDISKRMEYELQLKNAKEEAESGSKAKSRFLAT 510

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           +SHEIR+PL A++G  E++ +       N     YA     +G  +L  +ND+LD SKIE
Sbjct: 511 MSHEIRSPLNAVLGSVELLLDSML----NKEQRLYAQTAREAGTALLSTINDILDFSKIE 566

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALN 710
           +G+M L  E  S  + VS+ + ++   A EK + + T    N+P I+  D + ++Q+  N
Sbjct: 567 AGQMALETESFSPAKLVSQVMQILAPKAAEKGVNLATFINRNVPEIVKGDAQRLRQVLHN 626

Query: 711 ILSNAIHFTPSGGQIIISTTHTS--NEEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNS 766
           ++ NAI F+ SG  I +        ++EV L   V D G+G++    EK  + F Q+ + 
Sbjct: 627 LVDNAIKFSDSG-CISVEMWIPDSHHQEVQLYCTVTDEGIGVSLSAQEKLFQEFSQVHDQ 685

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
                +GTGLGL +   ++    GK  + S    G+    
Sbjct: 686 HNTSYKGTGLGLAICSELITMMGGKIELSSRLGHGSCFRF 725



 Score = 43.1 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 17/154 (11%), Positives = 43/154 (27%), Gaps = 17/154 (11%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI--------GDLLKRQ 140
           ID +G + +++  + +  G    +++G  +           +N           + ++R 
Sbjct: 254 IDVYGVITQVNPAICRLFGYMEDEIVGKNVSIFMPSYERHTHNAFLKRFIEGKREAVERN 313

Query: 141 NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
                +      +G    + + ++ + I    +E       G+V             KR 
Sbjct: 314 G---REFMALHKDGNLFPIELSISKMTI---EKEIM---LLGLVKDLSDIKQKEIEAKRT 364

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL 234
           +       E  +           I         L
Sbjct: 365 ESILLATLEASQDALITIDIAGKIQEFNEAASQL 398



 Score = 40.0 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 35/246 (14%), Positives = 79/246 (32%), Gaps = 22/246 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN---NHIGDLLKRQN---- 141
           ID  G ++E +E   +  G+    +IG +L +V     I+       + +  +  +    
Sbjct: 382 IDIAGKIQEFNEAASQLFGHDKESVIGEQLAEVIFT-DIEKACFKEGLEEFRQTGDGPAI 440

Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
               +     ++G+   +PI+L  +P+   +  F        +H      +     K   
Sbjct: 441 KKSIELMSMKLDGST--LPIELKMIPVQLGDDIFLTA----FIHDISKRMEYELQLKNAK 494

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE-KYP 260
           ++     + K    +    +          P   +   V  L +   +K+  L  +    
Sbjct: 495 EEAESGSKAKSRFLATMSHEIRS-------PLNAVLGSVELLLDSMLNKEQRLYAQTARE 547

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
             T+  S++ +  DF  I   Q   +    +      +  + L+ +              
Sbjct: 548 AGTALLSTINDILDFSKIEAGQMALETESFSPAKLVSQVMQILAPKAAEKGVNLATFINR 607

Query: 321 LTPETV 326
             PE V
Sbjct: 608 NVPEIV 613


>gi|307942838|ref|ZP_07658183.1| multi-sensor signal transduction histidine kinase [Roseibium sp.
           TrichSKD4]
 gi|307773634|gb|EFO32850.1| multi-sensor signal transduction histidine kinase [Roseibium sp.
           TrichSKD4]
          Length = 812

 Score =  345 bits (886), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 116/650 (17%), Positives = 238/650 (36%), Gaps = 28/650 (4%)

Query: 173 REFSGFRGFGIVHVNRVDNDPRALGKRL-------DKKFSHLHEIKKGHSSVEKEKYDIF 225
              +G      +     +   +A                  L +     +     +  + 
Sbjct: 166 GRTTGGAVVLRLRDMTGERQIQAEISARNAKISGELHMLHSLLDALPSPAWQRDAEGKLI 225

Query: 226 SQQSP-PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYT 284
                    +   ++ +++ E     D     +      +E+     +         +  
Sbjct: 226 WVNQAYATAIDAPDQKAAIKEGDDFLDSAA-RDAAGKNRNEDGCFTARIPMVAAGERRV- 283

Query: 285 KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFY 343
                  +  N   +   +       +       E     T+D+      +Y     L +
Sbjct: 284 --FEVTDVAANVGGAGVAIDISELDQVRRELSRAEEFHGRTLDQLVTAVAIYGGDRKLQF 341

Query: 344 ANPSFLLLTKYKS--VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401
            N +F  L + +   ++     G +   L A +     A   V       +  +   + H
Sbjct: 342 HNEAFRQLWELEPVFLESSPEDGAVLDALRAARKLPEQADYRVWRNTMLESYQSVETKEH 401

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
                   +L +   P          +       E +D       +     +    LE  
Sbjct: 402 WWHLPDGRTLRVVASPHP----QGGVIYIYENVTERLDLESRYNALIRVQGE---TLENL 454

Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP--SVMNHYLTEILSL 519
           S+ +A+   +G +   N A S+++ +  + + + P    LE               + + 
Sbjct: 455 SEAVAVFGSDGRLRLWNPAFSRIWNFEEDRLSQLPHVNQLESTCALSPAEQEAWDRLSAN 514

Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579
                  +  + +  E    ++              +T  D+++    +  L    +  E
Sbjct: 515 VTSLLENRTPVANRMERHDGAVLDYATVPLPDGGTLVTFVDVTDSVNVERALVEKNEALE 574

Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639
           +    K+ F+  VS+E+R+PLT IIGF++++ + +FG L   +  EYA+YI  S + +L 
Sbjct: 575 QADELKNAFIQHVSYELRSPLTNIIGFAQLLTDPKFGDLS-EKQGEYADYIRSSSSALLA 633

Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA 699
           I+ND+LD++ +++G M L    V +   V  A+  ++    E RI +RT   +NI  ++A
Sbjct: 634 IINDILDLATLDAGIMELELSEVDVAATVEAAVEGLKDRLAESRINLRTDVPDNIGSMVA 693

Query: 700 DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKP 759
           D + ++Q+  N++SNA+ ++   G + +   +  +E V   V+D G G+    L +    
Sbjct: 694 DEKRLRQVLYNLISNAVRYSEEEGVVDV-VCNRKDEAVEFVVKDHGCGIPADILTQVFNR 752

Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           F    N+   R +G GLGL + K+ V+ + GK  I S   KGT +   FP
Sbjct: 753 FV-GHNAGARR-QGAGLGLSIVKSFVELHGGKVDINSVEGKGTTVTCSFP 800



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/388 (11%), Positives = 94/388 (24%), Gaps = 27/388 (6%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK 146
           W  DA G L  +++     I     K       D  D    D         K +N     
Sbjct: 216 WQRDAEGKLIWVNQAYATAIDAPDQKAAIKEGDDFLDSAARDAAG------KNRNEDGCF 269

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
           T   P+         ++             G    G+       +  R    R ++    
Sbjct: 270 TARIPMVAAGERRVFEVT-----DVAANVGGA---GVAIDISELDQVRRELSRAEEFHGR 321

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
             +      ++      +            L      SS  +           +      
Sbjct: 322 TLDQLVTAVAIYGGDRKLQFHNEAFRQLWELEPVFLESSPEDGAVLDALRAARKLPEQAD 381

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE-------YLSHRNHPSLSAYFD 316
                    E + ++   ++      G                  Y +      L + ++
Sbjct: 382 YRVWRNTMLESYQSVETKEHWWHLPDGRTLRVVASPHPQGGVIYIYENVTERLDLESRYN 441

Query: 317 EGENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
               +  ET++       V+ S G L   NP+F  +  ++  D +     ++ L     L
Sbjct: 442 ALIRVQGETLENLSEAVAVFGSDGRLRLWNPAFSRIWNFE-EDRLSQLPHVNQLESTCAL 500

Query: 376 SDNNAIKPVMLYRSDRTCIAASA-RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
           S         L  +  + +       + ++ +    L    +P          +      
Sbjct: 501 SPAEQEAWDRLSANVTSLLENRTPVANRMERHDGAVLDYATVPLPDGGTLVTFVDVTDSV 560

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATS 462
             +         +E       + ++  S
Sbjct: 561 NVERALVEKNEALEQADELKNAFIQHVS 588


>gi|167630148|ref|YP_001680647.1| signal transduction histidine kinase, putative [Heliobacterium
           modesticaldum Ice1]
 gi|167592888|gb|ABZ84636.1| signal transduction histidine kinase, putative [Heliobacterium
           modesticaldum Ice1]
          Length = 477

 Score =  345 bits (886), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 86/425 (20%), Positives = 177/425 (41%), Gaps = 22/425 (5%)

Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
                         +    E          ++ ++            E V T+I   ++ 
Sbjct: 75  WSGQLAKTLEEYTRVVHRLEAGHGACHYLMDQPDELGRLARAIHQTVETVRTKI--HQLS 132

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
            +  +  +ILE+  +G+   +  G IL  N A  ++     E +  K             
Sbjct: 133 QDKTKFETILESMIEGVVGFDHMGRILLMNSAAEQMLRVQSERVRGKLLLEAFRH---RE 189

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568
           +   LT+ L+    Q  +     +  +   + +  +          ++ + D++E ++ +
Sbjct: 190 LEGLLTQALNTGKAQKKQMQLWPNKPQTFRVQVVPVWTDQRRLLGAAMVIDDVTEVRRLE 249

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
                           +++F+A VSHE+RTPLT+I GF E + +             + +
Sbjct: 250 --------------QMRTEFVANVSHELRTPLTSIKGFVETLLDGALD--DTKVARRFLS 293

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I+     +  ++ DLL +S+IES    +      L+  +    +L++  A +KRI ++ 
Sbjct: 294 IINEETQRLQRLIEDLLQLSRIESQLGRVVEGQSYLEPEIQRVRNLLEPIAADKRIALQV 353

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748
               N+P +     ++KQ+ +N+  NAI +TP GGQ+ +       + VIL V+DTG+G+
Sbjct: 354 DVETNLPLLPLSPDNLKQVLVNLTENAIKYTPEGGQVSVR-ATRGCDSVILEVQDTGIGI 412

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
               L +  + F ++  ++     GTGLGL + K +++ + G+  + S    G+   + F
Sbjct: 413 PEESLPRIFERFYRVDKARSRELGGTGLGLAIVKHIIERSGGRVTVQSKVGVGSTFTVTF 472

Query: 809 PLYDT 813
           P+ + 
Sbjct: 473 PVAEE 477


>gi|90418499|ref|ZP_01226411.1| putative two-component signal transduction histidine kinase
            [Aurantimonas manganoxydans SI85-9A1]
 gi|90338171|gb|EAS51822.1| putative two-component signal transduction histidine kinase
            [Aurantimonas manganoxydans SI85-9A1]
          Length = 1302

 Score =  345 bits (886), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 106/663 (15%), Positives = 223/663 (33%), Gaps = 46/663 (6%)

Query: 152  IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
                ++   ++L    I +R RE            NR   D   +G  +     H+  + 
Sbjct: 529  RREESIRNTVELKTHAIAARERE------------NRAIVDTAVVGFIVLDCAGHILSVN 576

Query: 212  KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271
            +   ++     D    +     L      +        + +        + T  ++  P 
Sbjct: 577  RAVEAIFGHTADEIRNRHVETILSYDAITAVTLATAVGEGEPASDSPVVIRTRSKAGKPL 636

Query: 272  QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI 331
              D    + +  +       +  +       +            +  E      ++   I
Sbjct: 637  YLDVQRNDWSTESGDLRHTLIIRDVTAQRLAV---------EALEANERRWNHALEGAGI 687

Query: 332  PFFVYSHGNLF-YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390
              F         + + ++  +  +   DDIE        +    L    A++       D
Sbjct: 688  GVFDIDFRRGQSFVSDTWKQMLGFSPSDDIEPRAEWLARIHPEDLPALKAVEDAYY---D 744

Query: 391  RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450
                 + A     + +       +     + ++  + M   G + E  + +  +  +   
Sbjct: 745  TATFRSEAEYRIRRKDNVWIWLRSDSIVIERDKAGQPMRVIGTQSEITELKTAEAALRSS 804

Query: 451  VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
              ++   L     G+A+++  G  +  N+A+    GY  +++L++        +   +  
Sbjct: 805  EERVRLALRDAPVGMAMLDLNGGWIRVNQALCAFLGYSEDELLQRDLAAVTHPDDVGIDR 864

Query: 511  HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---YSLTMHDISEWKQE 567
              + ++++  L  T +       ++ + L     +  +            + DI++ K  
Sbjct: 865  EQMAQMIAQTLP-TYQVEKRFLHRDGRALWCLFSVSLVHDHDGQAYLVSHVQDINDRK-- 921

Query: 568  KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
                        +    K++F+A VSHE+RTPLT+I G    +          P      
Sbjct: 922  ------------EMDRLKNEFVATVSHELRTPLTSIRGSL-GLIQGVMAKDVPPAATRLL 968

Query: 628  NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
                 +   ++ ++ND+LD+ KI +G M      V  + AVS+AI   Q Y     + + 
Sbjct: 969  TIAVANCERLVALINDILDLEKITAGMMAFETVLVDPNAAVSQAIEANQPYFARFGVSVA 1028

Query: 688  TSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
             +        I  D    +Q+  N+LSNA  F+P GG I ++        + + V D G 
Sbjct: 1029 FNATGKGEAWIPVDPARFQQVLANLLSNAAKFSPQGGIIDVAIEPID-GAIRISVTDHGT 1087

Query: 747  GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
            G+      +    F Q  +S      GTGLGL + + +++   G     + P  G    I
Sbjct: 1088 GIPAEFQSRIFDRFTQADSSATREKGGTGLGLHITRQIIETMGGTIDFANVPGAGARFWI 1147

Query: 807  IFP 809
              P
Sbjct: 1148 DMP 1150



 Score = 68.5 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 33/421 (7%), Positives = 103/421 (24%), Gaps = 42/421 (9%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D  G++  ++  +    G+ A ++    +  +     I     +   +           
Sbjct: 566 LDCAGHILSVNRAVEAIFGHTADEIRNRHVETILSYDAITAVT-LATAVGEGEPASDSPV 624

Query: 149 LWPIE---GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +       G  LY+ +          + E    R   I+             +  +++++
Sbjct: 625 VIRTRSKAGKPLYLDVQ-----RNDWSTESGDLRHTLIIRDVTAQRLAVEALEANERRWN 679

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPP-------PHLRMKNKVSSLTEYYAHKDDVLKTEK 258
           H  E           +                 P   ++ +   L   +      LK  +
Sbjct: 680 HALEGAGIGVFDIDFRRGQSFVSDTWKQMLGFSPSDDIEPRAEWLARIHPEDLPALKAVE 739

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN-SKESFEYLSHRNHP----SLSA 313
                +       +      +      +     ++ + + +    +  ++      +  A
Sbjct: 740 DAYYDTATFRSEAEYRIRRKDNVWIWLRSDSIVIERDKAGQPMRVIGTQSEITELKTAEA 799

Query: 314 YFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                E      +   P+    +  +G     N +      Y   + ++       L   
Sbjct: 800 ALRSSEERVRLALRDAPVGMAMLDLNGGWIRVNQALCAFLGYSEDELLQR-----DLAAV 854

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM-TFIPFEKANQFPENMPQN 431
               D    +  M     +T          +  +      + +       +     +   
Sbjct: 855 THPDDVGIDREQMAQMIAQTLPTYQVEKRFLHRDGRALWCLFSVSLVHDHDGQAYLVSHV 914

Query: 432 GIEPEDVD-TRINKRKMEIEVMQLCSILEATS------DGIAIINREGIILSTNRAVSKL 484
               +  +  R+    +     +L + L +         G+   +          A ++L
Sbjct: 915 QDINDRKEMDRLKNEFVATVSHELRTPLTSIRGSLGLIQGVMAKD-------VPPAATRL 967

Query: 485 F 485
            
Sbjct: 968 L 968



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/325 (8%), Positives = 83/325 (25%), Gaps = 16/325 (4%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL--KRQNTWYGK 146
            +D +G    +++ L   +G    +++   L  V+    +  +      +  +   T+  +
Sbjct: 822  LDLNGGWIRVNQALCAFLGYSEDELLQRDLAAVTHPDDVGIDREQMAQMIAQTLPTYQVE 881

Query: 147  TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                  +G    +    +   ++  + +      + + HV  +++       + +   + 
Sbjct: 882  KRFLHRDGRA--LWCLFSVSLVHDHDGQ-----AYLVSHVQDINDRKEMDRLKNEFVATV 934

Query: 207  LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
             HE++   +S+      I           +    + L        + L      +L  E+
Sbjct: 935  SHELRTPLTSIRGSLGLIQGV----MAKDVPPAATRLLTIAVANCERLVALINDILDLEK 990

Query: 267  SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
             +         +        Q     Q         ++        A+         + +
Sbjct: 991  ITAGMMAFETVLVDPNAAVSQAIEANQPYFARFGVSVAFNATGKGEAWIPVDPARFQQVL 1050

Query: 327  DKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
                     +S  G +     +   +     +   +   G+     +             
Sbjct: 1051 ANLLSNAAKFSPQGGIIDV--AIEPIDGAIRISVTDHGTGIPAEFQSRIFDRFTQADSSA 1108

Query: 386  LYRSDRTCIAASARLHTIQWNRENS 410
                  T +        I+      
Sbjct: 1109 TREKGGTGLGLHITRQIIETMGGTI 1133


>gi|157374520|ref|YP_001473120.1| Signal transduction histidine kinase-like protein [Shewanella
           sediminis HAW-EB3]
 gi|157316894|gb|ABV35992.1| Signal transduction histidine kinase-like protein [Shewanella
           sediminis HAW-EB3]
          Length = 1468

 Score =  345 bits (886), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 94/498 (18%), Positives = 189/498 (37%), Gaps = 19/498 (3%)

Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
           +D+  I       G + Y N  F  ++ Y S + +    G +  +           K + 
Sbjct: 445 LDQHSIVAVTDLKGTITYVNQLFTEISGYASEELL----GRNHRILNSGHHPRGFFKQMY 500

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
              +      A                +        +          I  +  +      
Sbjct: 501 EVITKGEVWNAEICNRA---KNGTLYWVDTTVVPLKDAEGHPHSYIAIRTDITERMTASI 557

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           K    +  + S+LE+T +GI + + +G IL  N    +L+    + ++ +  +       
Sbjct: 558 KANEALSLMHSVLESTDNGILVTSIQGKILQVNNRFMELWKIDDKTLIGRDDSEIAHYAK 617

Query: 506 PSVMNH--YLTEILSLDLRQTLEKITLGSTKEEKLL-SLRIIIKKLPFSSCYSLTMHDIS 562
             +++   ++  I  L     LE     +  + ++   + + +           +  D++
Sbjct: 618 SQLVDSASFIQGIERLYRDPELELFDTLAFIDGRVFERVSLPMMSEGGVLGRVWSFRDVT 677

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E  + +++L  AK+ AE     KS+FLA +SHEIRTP+  ++G   ++ N +     +  
Sbjct: 678 ESMKIRSELMLAKEGAELAVKAKSEFLASMSHEIRTPMNGVLGMLGLLLNTKL----SDF 733

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                +    S   +L ++ND+LD SKI++GK+ L     +L   + E    +   A +K
Sbjct: 734 QRRRVSIAQSSAESLLTLINDILDYSKIDAGKLELENLDFNLRGMLGEFAEGMAHLAQDK 793

Query: 683 RILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQII----ISTTHTSNEEV 737
            + +           +  D   ++Q   N+  NAI FT  G  +I    +     +   +
Sbjct: 794 DLELILDVKGVEYSMVNGDPGRLRQALTNLTGNAIKFTKQGEVVIKAELVPCDDETLWRL 853

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
              V DTG+G+   +++     F Q+  S   +  GTGLGL +   + +   G   + S 
Sbjct: 854 KCSVSDTGIGIAEDKIDSLFDSFSQVDASTTRKYGGTGLGLAIVDKVCNLMGGSVSVESE 913

Query: 798 PAKGTLIEIIFPLYDTSH 815
              G+       L  ++H
Sbjct: 914 EGVGSCFRFEVSLGRSTH 931



 Score = 54.3 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 29/268 (10%), Positives = 67/268 (25%), Gaps = 12/268 (4%)

Query: 68  LDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI 127
           L+S     F     ++      D  G +  +++   +  G  + +++G     ++   H 
Sbjct: 435 LESLEGQKFALDQHSIVAV--TDLKGTITYVNQLFTEISGYASEELLGRNHRILNSGHHP 492

Query: 128 DP-NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHV 186
                 + +++ +   W  +       GT  +V   +  +P+         +    I   
Sbjct: 493 RGFFKQMYEVITKGEVWNAEICNRAKNGTLYWVDTTV--VPLKDAEGHPHSY--IAIRTD 548

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSL 243
                               + E       V   +  I    +       +  K  +   
Sbjct: 549 ITERMTASIKANEALSLMHSVLESTDNGILVTSIQGKILQVNNRFMELWKIDDKTLIGRD 608

Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSL--PEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301
               AH       +    +   E     PE E F T+        +       +      
Sbjct: 609 DSEIAHYAKSQLVDSASFIQGIERLYRDPELELFDTLAFIDGRVFERVSLPMMSEGGVLG 668

Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKC 329
            +      + S        L  E  +  
Sbjct: 669 RVWSFRDVTESMKIRSELMLAKEGAELA 696


>gi|325292361|ref|YP_004278225.1| two component sensor kinase [Agrobacterium sp. H13-3]
 gi|325060214|gb|ADY63905.1| two component sensor kinase [Agrobacterium sp. H13-3]
          Length = 775

 Score =  345 bits (886), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 113/544 (20%), Positives = 224/544 (41%), Gaps = 51/544 (9%)

Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDI 360
           Y+  +        F E        + +     + +       + + S   +         
Sbjct: 237 YMQVKRARDADDIFAESNLRVETALSRGRCGLWDFDLSTRRMFWSGSLYEILGRPPKAAP 296

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
                 + ++ +   +     + V        C          +        +      +
Sbjct: 297 LSFSDAARMMHSEDGNLYELARAV-------GCGDLRQIDQIFRMRHAKGHYVWLRARAQ 349

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
             +        GI  +  +     ++      +L   +E+TS+   + ++   ++  N  
Sbjct: 350 VIRTNNGPRVIGIAMDVTEQHRLAQRYAEADQRLADAIESTSEAFVLWDKNDRLVMCNTH 409

Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
             K +G P   ++       +     +     +   ++   +  L ++T     +++ L 
Sbjct: 410 YQKAYGLPDSVLVAGTEKSAV---QAAAARPVVERRVADPDQSGLSRMTEVQLADDRWLQ 466

Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH--------------------------- 573
           +     +            DI+  K+ + +L                             
Sbjct: 467 INERRTR---DGGLVSVGTDITLLKRHQERLRDSERRLMATIGDLSASQHKLERQKTELS 523

Query: 574 --------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
                    K+ A+  +  KS+FLA +SHE+RTPL AI+GFS++++N+ FGP+G+P+Y E
Sbjct: 524 DANANYLAEKERAQAANLAKSEFLANMSHELRTPLNAILGFSDILQNEMFGPVGSPKYSE 583

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           YA  I  SG  +L+++ND+LD+SKIE+G M ++ E + L   + E + L  + A +K I 
Sbjct: 584 YARDIHDSGKHLLNVINDILDMSKIEAGHMRINRETIDLAPLIEETLRLTAIQAEQKNIT 643

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           ++      +  +  D R++KQI LN+LSNA+ FT +GG++ + T       + L + DTG
Sbjct: 644 VQQKVCAGL-TMQGDRRAMKQIMLNLLSNAVKFTGNGGRVALRTHVHQAAMI-LTIADTG 701

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+    L+K  +PF Q+ +       G+GLGL +++++V  + G   I S   +GT++ 
Sbjct: 702 IGIPAEALDKIGQPFEQVQSQYAKSQGGSGLGLAISRSLVRLHGGTMKIRSCEGRGTVVT 761

Query: 806 IIFP 809
           II P
Sbjct: 762 IIIP 765


>gi|254293651|ref|YP_003059674.1| histidine kinase [Hirschia baltica ATCC 49814]
 gi|254042182|gb|ACT58977.1| histidine kinase [Hirschia baltica ATCC 49814]
          Length = 752

 Score =  345 bits (886), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 116/420 (27%), Positives = 189/420 (45%), Gaps = 47/420 (11%)

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
             P     +GI  +  +    + +  +      S+ +A     A  ++   +L  NR  +
Sbjct: 336 GGPFQDGLSGIMTDTTERVRAEARSRMSEHLARSVADAYPGPFASWDQRHRLLLWNRHFA 395

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
           +LF  P   +        +       +               +E+   GS    ++L L 
Sbjct: 396 RLFNLPENVLKAGTSYDVVMAEAAKQIR--------------IERPVPGSDNGREILLLS 441

Query: 543 IIIK----KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK------------------ 580
            I      +            DIS  K  +  L   +K   +                  
Sbjct: 442 DIWLNFYDRPTAGGGLVTVGLDISSIKNHQESLLGKEKKLRRLVLELDRMQGQSEEHARK 501

Query: 581 ----------ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
                      S  KS FLA +SHE+RTPL AI GFSE++  + +GPLG+ RYI YA  I
Sbjct: 502 YAEEKTKAEKASQAKSVFLANMSHELRTPLNAINGFSEMLIKEIYGPLGDERYIGYAEDI 561

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
             SG  +LD++ND+LD++KIE+GKM++    +   EAV  A+ +++  A +K I +  + 
Sbjct: 562 LSSGQHLLDMINDILDMAKIEAGKMSISTREIDPVEAVDSAVRMIRRRAADKDIDLNLTV 621

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
            ++IP I  D R++KQ+ LN++SNAI FT  GG I IS     N  V + V D G+G+  
Sbjct: 622 KDDIPDIEGDHRAIKQMVLNLVSNAIKFTDPGGYINISV-VKENAFVRVSVADNGIGIPK 680

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            ++ +  +PF Q    +    +G+GLGL L K+  + + G+  I S   +GT +  + P+
Sbjct: 681 QDIPRLAQPFEQSSADENRNSKGSGLGLSLTKSFAEMHGGRLEIESEFGEGTTVSFLLPV 740


>gi|332798940|ref|YP_004460439.1| multi-sensor signal transduction histidine kinase
           [Tepidanaerobacter sp. Re1]
 gi|332696675|gb|AEE91132.1| multi-sensor signal transduction histidine kinase
           [Tepidanaerobacter sp. Re1]
          Length = 581

 Score =  345 bits (885), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 90/363 (24%), Positives = 173/363 (47%), Gaps = 22/363 (6%)

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
           ++    +  ++L + ++G+  ++    I+  N A  KLF    ++ L +     L     
Sbjct: 239 LKDGRDKTEAVLSSMAEGLIAVDHNCHIVMMNSAAEKLFKIKKDEFLGRHLLEMLR---N 295

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQ 566
             +   +  +L+    + L +     T  EK+  + I       +S   + + DI++ ++
Sbjct: 296 KELYDLVNTVLTT--SKNLSQELKIITSTEKIFYINISPINKIENSGAVIILRDITDLRK 353

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
            +                +++F+A +SHE++TPLT+I GF E + +  +    + +Y  +
Sbjct: 354 LE--------------KVRTEFVANISHELKTPLTSIAGFVETLLDGAYKSQDHCKY--F 397

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
              I +  + +  ++N+LL  S IE     +  +PV + E + +A+S++Q   NEK+  +
Sbjct: 398 LGIIKQETDRMTRLINELLYFSHIEKNGTEIIKKPVDMIEVIMKALSILQTAINEKKHKV 457

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
                 NI  IL++  S+ QI +N+L NAI +TP GG I I     + E V++ V D G+
Sbjct: 458 NLKLPENIAHILSNEDSLLQIMINLLDNAIKYTPEGGTISIMVE-ETLENVLITVADNGI 516

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+   EL++  + F ++  ++     GTGLGL + K +V    G   + S   KGT   +
Sbjct: 517 GIAEDELDRIFERFYRVDRARSGEIGGTGLGLAMVKHLVKGLEGWIKVESELEKGTSFTV 576

Query: 807 IFP 809
             P
Sbjct: 577 YIP 579


>gi|330873086|gb|EGH07235.1| two-component sensor/regulator [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 576

 Score =  345 bits (885), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 123/569 (21%), Positives = 217/569 (38%), Gaps = 51/569 (8%)

Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP-----IPFFVYSHGNLFYANPSFLL 350
             +       R    + +   +    T    D               HG +   N     
Sbjct: 6   VDQPTTETQSRAEKIVESRRQKTLLKTGALQDAIFNSAYFSSIATDEHGVIQIFNVGAER 65

Query: 351 LTKYKSVDDIEIAGGLS-----TLLDAPKLSDNNAIKPVM-----LYRSDRTCIAASARL 400
           +  Y S D ++            L+       +    P+      L       I     L
Sbjct: 66  MLGYHSEDVVDKITPADISDPAELIIRAAALSHELNTPITPGFEALVFKASRGIEDIYEL 125

Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK-------RKMEIEVMQ 453
             I+ +     AM        +     +    I  ++   +  +       +++  +   
Sbjct: 126 TYIRKDGSRLSAM-VSVTSLRDSAETIIGYLLIGTDNTARKQEEETQALLDQRLRDQQFY 184

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
             S++E+  D + + + +GII   N+ +  L G   ++++  P   F     P+  +  +
Sbjct: 185 TRSLIESNIDALMMTDPQGIISDVNKQMMALTGRTRDELIGAPCKNFF--TDPASADAAI 242

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKL 571
             +LS       E         E ++S                     D++E K+ +  L
Sbjct: 243 KRVLSEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRKLKGVFAAARDVTERKRFERTL 302

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
                  E  S  KS+FLA +SHE+RTPL A+IGFSE +K+   G + +     Y   I 
Sbjct: 303 EEKNIELEHASHMKSEFLATMSHELRTPLDAVIGFSEALKDGMVGDMTDA-QRRYIGDIF 361

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
            SG  +L ++ND+LD+SK+E+G M L  E V LDE +S ++ +V+  A  +RI ++    
Sbjct: 362 NSGQHLLSLINDILDLSKVEAGMMLLELEAVDLDELLSNSLLIVREQAALQRIQLKLETE 421

Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL------------ 739
            +   +  D R  KQI  N+L+NA+ F+  GG + ++    S  +V +            
Sbjct: 422 ADFGVLELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRQVSRAQVSILDGDWPVHSVPL 481

Query: 740 -----------RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                       V DTG+G+   ++ K  K F QI +S   + EGTGLGL + K + + +
Sbjct: 482 PPGDYEHFLQVSVSDTGIGIAQSDMNKLFKAFSQIDSSLARKFEGTGLGLAMVKQLTELH 541

Query: 789 MGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
            G   + S    G    +  P+   +   
Sbjct: 542 GGCVAVASVKDLGARFVVWLPIRPPATEE 570



 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/230 (11%), Positives = 63/230 (27%), Gaps = 7/230 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            D  G + ++++++    G    ++IG    +         +  I  +L        + T
Sbjct: 199 TDPQGIISDVNKQMMALTGRTRDELIGAPCKNFFTDP-ASADAAIKRVLSEHKVSDYELT 257

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           +   +GT     +   A   + R+R+  G   F                +  + +  H  
Sbjct: 258 VRAYDGTETV--VSYNAATFHDRDRKLKGV--FAAARDVTERKRFERTLEEKNIELEHAS 313

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK-VSSLTEYYAHKDDVLKTEKYPLLTSEES 267
            +K    +    +              +K+  V  +T+        +      LL+    
Sbjct: 314 HMKSEFLATMSHELRTPLDAVIGFSEALKDGMVGDMTDAQRRYIGDIFNSGQHLLSLIND 373

Query: 268 SLP-EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
            L   + +   + L             +      +    R    L    D
Sbjct: 374 ILDLSKVEAGMMLLELEAVDLDELLSNSLLIVREQAALQRIQLKLETEAD 423



 Score = 45.4 bits (106), Expect = 0.042,   Method: Composition-based stats.
 Identities = 41/454 (9%), Positives = 113/454 (24%), Gaps = 49/454 (10%)

Query: 43  NPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFT-WNIDAHGYLKEISEE 101
           NP  D       +   +   S       +   + D I  +  F+    D HG ++  +  
Sbjct: 3   NPPVDQPTTETQSRAEKIVESRRQKTLLKTGALQDAIFNSAYFSSIATDEHGVIQIFNVG 62

Query: 102 LPKTIGNYAFKMIGM-RLCDVSDILHI------------DPNNHIGDLL----KRQNTWY 144
             + +G ++  ++      D+SD   +             P     + L     R     
Sbjct: 63  AERMLGYHSEDVVDKITPADISDPAELIIRAAALSHELNTPITPGFEALVFKASRGIEDI 122

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP-----RALGKR 199
            + T    +G+   +   ++   +        G+   G  +  R   +          + 
Sbjct: 123 YELTYIRKDGS--RLSAMVSVTSLRDSAETIIGYLLIGTDNTARKQEEETQALLDQRLRD 180

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSSLTEYYAHKDDVLKTE 257
                  L E       +   +  I            R ++++          D      
Sbjct: 181 QQFYTRSLIESNIDALMMTDPQGIISDVNKQMMALTGRTRDELIGAPCKNFFTDPASADA 240

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
               + SE      +      +  +        T  +  ++     +     +    F+ 
Sbjct: 241 AIKRVLSEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRKLKGVFAAARDVTERKRFER 300

Query: 318 GENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
                   ++               +    FL    ++    ++   G            
Sbjct: 301 TLEEKNIELEHAS------------HMKSEFLATMSHELRTPLDAVIG----FSEALKDG 344

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
                     R       +   L ++  +    L ++ +         E +  + +    
Sbjct: 345 MVGDMTDAQRRYIGDIFNSGQHLLSLIND---ILDLSKVEAGMMLLELEAVDLDELLSNS 401

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471
           +     +  ++   ++L +       G+  ++R 
Sbjct: 402 LLIVREQAALQRIQLKLET---EADFGVLELDRR 432


>gi|327541216|gb|EGF27760.1| multi-sensor hybrid histidine kinase [Rhodopirellula baltica WH47]
          Length = 1150

 Score =  345 bits (885), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 103/575 (17%), Positives = 201/575 (34%), Gaps = 57/575 (9%)

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
           L  +      +      + +  +LQ                      D+ E      +D+
Sbjct: 115 LQGRLRTRLKHQRTLQHRVHRRSLQIRRVNRALRNEVTRRQETQHRLDQSETTFQSLIDR 174

Query: 329 CPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
             +     S  G   YAN  F        VD I   G     L    +        + + 
Sbjct: 175 MHLQVARKSAEGVFTYANEQFCADIGMTPVDVI---GSTDAELFGDSIGAKYRADDLSVM 231

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
            + +                            + +Q  + +    I  +  +   N+  +
Sbjct: 232 STGQAVDKVEVHPGP----DGRIGFAQVFKAPEYDQNGQCVGVQIIFWDITEKHRNEIAL 287

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
                +  ++ +A  D + +I+ +  I+  N + S+L       ++ +P    +   +  
Sbjct: 288 RDSEARKRALFDAAGDAVLLIDDQRAIVEANPSASELLQAGGGRLVGRPLNDLISPVSNQ 347

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS--LRIIIKKLPFSSCYSLTMHDISEWK 565
                        L             +       + I    +  ++  ++ + D++  +
Sbjct: 348 W----------GGLPLAERHQLRLRRGDGSSFESEVSIHHIPVGDATGQAVIIRDVTLQR 397

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
                +  AK  AE+ +  K+ F+A +SHE+RTPL  I G ++++  Q            
Sbjct: 398 AAFEAMREAKAAAEQANRTKTQFMAGISHELRTPLGGIRGLTDLLGQQTLPTAA----RR 453

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           Y N I ++  L+ D++ D+LD + IE+G++ +   PV L E V +A   + +   +K + 
Sbjct: 454 YVNLIAQNTELLRDVIEDILDFAAIEAGRVAIDPVPVDLHEVVGDAFGCLAVRVADKPVR 513

Query: 686 IRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV------- 737
           +  S A + PR ++AD + ++QI +N+  NAI FT  G    +S       +V       
Sbjct: 514 LCLSIAPDTPRRVIADPKRIRQIVINLAGNAIKFTNRG---EVSLRLGPIGDVPPSHSND 570

Query: 738 --------------------ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
                                L V DTG+G+      +    F Q       +  GTGLG
Sbjct: 571 ANSPELTTNESTDDTPMAWFELTVSDTGIGIAPENQSRIFDAFEQADRGTNKQFGGTGLG 630

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIE--IIFPL 810
           L +A+ +     G   + S    G+  +  +  PL
Sbjct: 631 LAIARGLAQRMGGDITVTSQVDLGSQFQCALALPL 665



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 35/369 (9%), Positives = 93/369 (25%), Gaps = 25/369 (6%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKRQNTWYGK 146
              A G     +E+    IG     +IG    ++  D +          ++         
Sbjct: 181 RKSAEGVFTYANEQFCADIGMTPVDVIGSTDAELFGDSIGAKYRADDLSVMSTGQAVDKV 240

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                 +G   +  +     P Y +N +  G +   I       +      +  + +   
Sbjct: 241 EVHPGPDGRIGFAQV--FKAPEYDQNGQCVGVQ--IIFWDITEKHRNEIALRDSEARKRA 296

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHL----------RMKNKVSSLTEYYAHKDDVLKT 256
           L +       +  ++  I         L          R  N + S          + + 
Sbjct: 297 LFDAAGDAVLLIDDQRAIVEANPSASELLQAGGGRLVGRPLNDLISPVSNQWGGLPLAER 356

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
            +  L   + SS   +   H I +   T +     +++ + +   + + R   + +   +
Sbjct: 357 HQLRLRRGDGSSFESEVSIHHIPVGDATGQAVI--IRDVTLQRAAFEAMREAKAAAEQAN 414

Query: 317 EGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
             +      +            G +          T   +          +T L    + 
Sbjct: 415 RTKTQFMAGISH----ELRTPLGGIRGLTDLLGQQTLPTAARRYVNLIAQNTELLRDVIE 470

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           D      +   R     +             +    +     +K  +   ++  +     
Sbjct: 471 DILDFAAIEAGRVAIDPVPVDLHEVV----GDAFGCLAVRVADKPVRLCLSIAPDTPRRV 526

Query: 437 DVDTRINKR 445
             D +  ++
Sbjct: 527 IADPKRIRQ 535


>gi|67924436|ref|ZP_00517862.1| PAS [Crocosphaera watsonii WH 8501]
 gi|67853725|gb|EAM49058.1| PAS [Crocosphaera watsonii WH 8501]
          Length = 1044

 Score =  345 bits (885), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 94/380 (24%), Positives = 174/380 (45%), Gaps = 20/380 (5%)

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR--KPFTVFLEQN 504
           +     +    +  T+DGI   +     +  +    K+ GY    +      ++  +   
Sbjct: 572 LRESERRYHLAVSGTNDGIWDWDLRDDTVYYSPVWMKILGYENNPLPHLLSTWSDNVHPE 631

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHD 560
             +     +   L        E        +   + +    K + +          T+ D
Sbjct: 632 DYAQAIKDIENHL-QGNTNIYENFHRIRHHDGHYIWIEAKGKCIRYQQGKPYRLVGTITD 690

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I+  K  +  L  AK+ AE  +  KS+FLA +SHEIRTP+ AI+GF +++K++    + +
Sbjct: 691 ITNKKAAQEALEKAKEAAEVANKAKSEFLATMSHEIRTPMNAILGFCDLLKSK----ITD 746

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
            +   Y + IDR G ++L +++D+LDISKIE+GK+++ +EP+ L E + E   +    A 
Sbjct: 747 EKSQNYLDSIDRIGKVLLSLIDDILDISKIEAGKLDITYEPIKLREIIIEIQRMFLEKAK 806

Query: 681 EKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-----SN 734
           EK++ I  +    +P ++  D   ++QI  N++ NAI FT  G  I IS          +
Sbjct: 807 EKQLQILVNIEVEVPDVIVFDEIRLRQILFNLVGNAIKFTEEG-LITISVKRDLLQWKDD 865

Query: 735 EE--VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
           +   + + ++DTG+G+   + ++    F Q       +  GTGLGL + + +     G  
Sbjct: 866 QYCSLEIAIKDTGIGIAPEQQKRVFDVFTQSEGQSNRKYGGTGLGLSITERLTKILGGTI 925

Query: 793 YIFSTPAKGTLIEIIFPLYD 812
            + S   KG+   ++FP  D
Sbjct: 926 QLESELGKGSTFTLLFPRVD 945



 Score = 42.7 bits (99), Expect = 0.27,   Method: Composition-based stats.
 Identities = 13/139 (9%), Positives = 38/139 (27%), Gaps = 5/139 (3%)

Query: 315 FDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
             E E      V       + +    +  Y +P ++ +  Y++         L +     
Sbjct: 572 LRESERRYHLAVSGTNDGIWDWDLRDDTVYYSPVWMKILGYENN----PLPHLLSTWSDN 627

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
              ++ A     +    +         H I+ +  + + +         Q  +     G 
Sbjct: 628 VHPEDYAQAIKDIENHLQGNTNIYENFHRIRHHDGHYIWIEAKGKCIRYQQGKPYRLVGT 687

Query: 434 EPEDVDTRINKRKMEIEVM 452
             +  + +  +  +E    
Sbjct: 688 ITDITNKKAAQEALEKAKE 706


>gi|114563673|ref|YP_751186.1| multi-sensor hybrid histidine kinase [Shewanella frigidimarina
           NCIMB 400]
 gi|114334966|gb|ABI72348.1| multi-sensor hybrid histidine kinase [Shewanella frigidimarina
           NCIMB 400]
          Length = 1132

 Score =  345 bits (885), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 108/512 (21%), Positives = 199/512 (38%), Gaps = 25/512 (4%)

Query: 314 YFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                E     T+         ++  G +   N +  LL  +  ++D+            
Sbjct: 289 LAKLTEARYRATISTAVDGIITFNAKGRIESGNQAVELLLGW-RLEDVCHQNIRD--FIP 345

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
               D    +      +     +    +  +  N      +                   
Sbjct: 346 SPFIDEFNARLDSFSNNIGQQKSTGRDVEALHVNGTT---IPVRVSIGHACIEGKSLFVM 402

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI--INREGI-ILSTNRAVSKLFGYPV 489
              +       +R +     Q  S++     GIA   +N E   ++  + AV  + GYP 
Sbjct: 403 YISDLRHRIEMQRALIKSEAQFRSLITNIP-GIAYRCLNVENWPMVFISDAVENITGYPA 461

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL-----SLRII 544
            D +         Q+        +   +  D    LE     +  + + L      +  I
Sbjct: 462 SDYIGATPKRHFYQHVHPDDLEQIGNQVVTDQVFKLEYRIYNANGDIRWLLGYGAHVDGI 521

Query: 545 IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
             +  +   + +   DI++ K+ +  L  AK  AE+ +S +S FLA +SHEIRTP+ AII
Sbjct: 522 DVQDKWLDGFIM---DITDRKEMEQSLLIAKDKAEQAASARSAFLANMSHEIRTPMNAII 578

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           GFS+++ +            ++   I++S   +L ++ND+LD +K++ GK +L     S+
Sbjct: 579 GFSDILLDDSLPA----EQQKHLRTINQSAKSLLHLLNDVLDSAKLDKGKFDLELRDFSV 634

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGG 723
            E +   +S + L A+ K + +  + + ++          ++Q+  N++ NAI FT  GG
Sbjct: 635 IEEIDSVVSTLWLQASSKGLFLNVNVSADVAISYHGAPDRIRQVLTNLIGNAIKFTAEGG 694

Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
            + I  +   +  +   + DTG+GMT  +L      F Q   S   R  GTGLG  ++K 
Sbjct: 695 -VSIDVSVKPSGCIEFAINDTGIGMTPEQLALVFDAFAQADASMNRRFGGTGLGTTISKQ 753

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
           +V+   GK    ST  +G+      PL    H
Sbjct: 754 LVELMGGKITAKSTFGQGSCFGFTLPLTAPKH 785


>gi|258622445|ref|ZP_05717467.1| conserved hypothetical protein [Vibrio mimicus VM573]
 gi|258585145|gb|EEW09872.1| conserved hypothetical protein [Vibrio mimicus VM573]
          Length = 1053

 Score =  345 bits (885), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 119/496 (23%), Positives = 216/496 (43%), Gaps = 25/496 (5%)

Query: 342 FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401
            +A   F  L        +++    S L  A +   + +     +             + 
Sbjct: 42  LHAADLFNQLLSVAPSATLQVTINDSGLTLAGRYPVSVSASAQYMLGMQVNSHRFVCHIA 101

Query: 402 TIQWNRE------NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR--KMEIEVMQ 453
             +            L +     E   +  E           ++  I KR  ++ +    
Sbjct: 102 AKRKTSRDEQEKLRELWLEKGRDELLEELHETNRALAQHQAGLEEEIAKRTKELAVSEEL 161

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
             +I+E     +AII+ +G+IL  N+     +GY  ++ L +P    L+   P  +   L
Sbjct: 162 SRTIIEGAPSSVAIIDSQGLILLWNKTAITTYGYTADEALGQPLLTLLKMALPPELAAAL 221

Query: 514 TEILSLDLRQTLEK---ITLGSTKEEKLLSLR--IIIKKLPFSSCYSLTMHDISEWKQEK 568
           T  L ++ +Q L +        T++  L+ +   + I +L      ++ + D++  K  +
Sbjct: 222 TLPLRVEQQQLLNEAFYEAETYTRDGTLVPIDLGVSIFELNGQCQAAMFLRDVTARKAAE 281

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
            +L+ AK  AE+    KS FLA +SHEIRTP+ AIIG S +       P    +  +Y +
Sbjct: 282 QELNEAKAKAEEAVEVKSMFLANMSHEIRTPMNAIIGMSHLALKTELTP----KQRDYVS 337

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I  S  L+L I+ND+LD SKIE+GK+++     SL+E +     +    A +K + +  
Sbjct: 338 KIHSSATLLLGIINDILDFSKIEAGKLSIEHIEFSLEEVLHNVSMVTGQKAFDKGLELLF 397

Query: 689 SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRD 743
           S    IP  ++ D   + Q+ +N+++NA+ FT  G +I +S      +    +++  V D
Sbjct: 398 SLPREIPHKLIGDPLRIGQVVINLVNNAVKFTEQG-EISVSVQVGERQPGRIKLLFNVSD 456

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TG+GMT  +     + F Q   S   +  GTGLGL +++ +V+   G+  + S P  G+ 
Sbjct: 457 TGIGMTEKQTRNLFQAFTQADGSTTRKYGGTGLGLSISRRLVELMEGEISVTSKPDAGSC 516

Query: 804 IEI--IFPLYDTSHPH 817
                 F + +   PH
Sbjct: 517 FTFNAWFDVDENQAPH 532



 Score = 38.5 bits (88), Expect = 4.9,   Method: Composition-based stats.
 Identities = 19/149 (12%), Positives = 46/149 (30%), Gaps = 18/149 (12%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRL---------CDVSDILHIDPNNHIGDLLKR 139
           ID+ G +   ++    T G  A + +G  L          +++  L + P       L  
Sbjct: 176 IDSQGLILLWNKTAITTYGYTADEALGQPLLTLLKMALPPELAAALTL-PLRVEQQQLLN 234

Query: 140 QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199
           +  +  +T  +  +GT + + + ++   I+  N +    +    +               
Sbjct: 235 EAFYEAET--YTRDGTLVPIDLGVS---IFELNGQ---CQAAMFLRDVTARKAAEQELNE 286

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228
              K     E+K    +    +       
Sbjct: 287 AKAKAEEAVEVKSMFLANMSHEIRTPMNA 315


>gi|307267066|ref|ZP_07548579.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306917897|gb|EFN48158.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 456

 Score =  345 bits (885), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 85/370 (22%), Positives = 171/370 (46%), Gaps = 24/370 (6%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +    ++     +L +IL++  +G+   +    IL  N A  K+     +D++ +     
Sbjct: 101 KETIEELNDRNAKLEAILKSIVNGVIAFDDNEKILLINDAARKILNIKEKDLIGRHILEV 160

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-CYSLTMH 559
           +     S ++    ++       +         K  K+ +   I+  +   +  + L + 
Sbjct: 161 VR---NSKLHDLFEDVKKNKNSSSRSLELNVFNKHLKVYT-SPILHPISHQNLGFVLIID 216

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           DI+E ++ +                +S+F+A VSHE+RTPLT+I GF E +   R G + 
Sbjct: 217 DITEMRRLE--------------KIRSEFVANVSHELRTPLTSIRGFIETL---RNGAIE 259

Query: 620 NPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
           NP   + + + ID     +  ++ND+L +S+IE+ K     E + LD  + + + ++   
Sbjct: 260 NPEARDKFLDIIDFESERLTRLINDILTLSEIENVKEGYPTEEIELDNEIEDILYIMDKV 319

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738
           A  K I ++         I  +     Q+ +N++ N I +TP GG + +ST     +++I
Sbjct: 320 ARNKNITLKKDLNCTDLVINTNKDRFHQMMINLIDNGIKYTPEGGFVKVSTR-EEGDKII 378

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           + V D G+G++   + +  + F ++  S+  +  GTGLGL + K +V+   G+ ++ S  
Sbjct: 379 IEVEDNGIGISKENIPRLFERFYRVDKSRSRKLGGTGLGLAIVKHIVEYMKGEIFVESEV 438

Query: 799 AKGTLIEIIF 808
            +GT   I F
Sbjct: 439 GRGTKFIIKF 448


>gi|289578660|ref|YP_003477287.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter italicus Ab9]
 gi|289528373|gb|ADD02725.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter italicus Ab9]
          Length = 456

 Score =  345 bits (885), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 85/370 (22%), Positives = 170/370 (45%), Gaps = 24/370 (6%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           ++   ++     +L +IL++  +G+   +    IL  N A  K+     +D++ K     
Sbjct: 101 KVTIEELNDRNAKLEAILKSIVNGVIAFDNNERILLINDAARKILNIKGKDLIGKHILEI 160

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-CYSLTMH 559
           +     S +     ++       +         K  K+ +   I+  +   +  + L + 
Sbjct: 161 VR---NSKLYDLFEDVKKNKNSPSKSLELNVFNKHLKVYT-SPILHPISHQNLGFVLIID 216

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           DI+E ++ +                +++F+A VSHE+RTPLT+I GF E +   R G + 
Sbjct: 217 DITEMRRLE--------------KIRNEFVANVSHELRTPLTSIRGFIETL---RNGAIE 259

Query: 620 NPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
           NP   + + + ID     +  ++ND+L +S+IE+ K     E   LD  + + + ++   
Sbjct: 260 NPEARDKFLDIIDFESERLTRLINDILTLSEIENVKEGYPTEETELDNEIEDILYIMDKM 319

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738
           A  K I +          I  +     Q+ +N++ N I +TP GG + +ST     +++I
Sbjct: 320 ARNKNITLIKDLNCPGLVINTNKDRFHQMMINLIDNGIKYTPEGGFVKVSTR-EEGDKII 378

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           + V+D G+G++   + +  + F ++  S+  +  GTGLGL + K +V++  G+  + S  
Sbjct: 379 IEVKDNGIGISKENIPRLFERFYRVDKSRSRKLGGTGLGLAIVKHIVESMKGEISVESEI 438

Query: 799 AKGTLIEIIF 808
            KGT   + F
Sbjct: 439 GKGTKFIMKF 448


>gi|83313245|ref|YP_423509.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82948086|dbj|BAE52950.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 1258

 Score =  345 bits (885), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 112/454 (24%), Positives = 195/454 (42%), Gaps = 22/454 (4%)

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
             LL   +L+   A  P      D   +   A    I      + A+      +A     
Sbjct: 391 ERLLAVVELATLEAFGPAEQSLLDGA-LPVLAMSLEILERGAKTAALLEETRVQAATLAA 449

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
           +  Q     E+++    +     E  +L  IL +  +GI  + ++G +   N A +++ G
Sbjct: 450 SERQVAARKEELEAINGQLAEAEERSRL--ILGSVDEGICGLAQDGTMSFVNPAGARMLG 507

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTE-----ILSLDLRQTLEKITLGSTKEEKLLSL 541
           Y +++I+ KP         P                     +T     L   K+     +
Sbjct: 508 YGLDEIVGKPLHALAHHTYPDGTPFPRECCSMFLTSQDGQPRTEVDEVLWR-KDGTSFPV 566

Query: 542 RIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
                 +          +T  DI+E K+    L  A   AE  S  K+DFLA +SHEIRT
Sbjct: 567 EYSTTPVLKDGTVVGTVVTFRDITERKRADALLHQALDRAEAASQAKADFLANMSHEIRT 626

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
           P+ AIIG S +          NPR  +Y   I +SG  +L I+ND+LD SKIE+GK+++ 
Sbjct: 627 PMNAIIGMSHLALKTEL----NPRQRDYVRKIQQSGQHLLGIINDILDFSKIEAGKLSVE 682

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIH 717
              V LD  +    +L+      K + +    A+++P  ++ D   + QI +N  +NA+ 
Sbjct: 683 KTAVHLDTVLDNVANLISEKTIAKGLELIFDVASDVPNDMVGDPLRLGQILINYANNAVK 742

Query: 718 FTPSGGQIIISTTHTSN----EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
           FT +G +I+++     +      +   VRDTG+G++  ++ +  + F Q   S   +  G
Sbjct: 743 FTETG-EIVVAVRLAEDLGEAVRLRFEVRDTGIGLSAEQMGRLFQSFQQADTSTTRKYGG 801

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           TGLGL +++ + +   G+  + S P +G+     
Sbjct: 802 TGLGLAISRKLAELMDGEVGVESQPGRGSTFWFT 835



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/193 (9%), Positives = 57/193 (29%), Gaps = 19/193 (9%)

Query: 50  EQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNID-------AHGYLKEISEEL 102
           + +      ++  +    L++ N  + +   R+     ++D         G +  ++   
Sbjct: 443 QAATLAASERQVAARKEELEAINGQLAEAEERSRLILGSVDEGICGLAQDGTMSFVNPAG 502

Query: 103 PKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL------KRQNTWYGK-TTLWPIEGT 155
            + +G    +++G  L  ++   + D      +        +           LW  +GT
Sbjct: 503 ARMLGYGLDEIVGKPLHALAHHTYPDGTPFPRECCSMFLTSQDGQPRTEVDEVLWRKDGT 562

Query: 156 NLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHS 215
           +   P++ +  P+  ++    G                 AL  +   +     + K    
Sbjct: 563 SF--PVEYSTTPVL-KDGTVVGT--VVTFRDITERKRADALLHQALDRAEAASQAKADFL 617

Query: 216 SVEKEKYDIFSQQ 228
           +    +       
Sbjct: 618 ANMSHEIRTPMNA 630


>gi|307153403|ref|YP_003888787.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7822]
 gi|306983631|gb|ADN15512.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7822]
          Length = 556

 Score =  345 bits (885), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 93/580 (16%), Positives = 207/580 (35%), Gaps = 77/580 (13%)

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
                   +       ++    ++    ++            +      + +    +++ 
Sbjct: 10  HLLNIIEDLEKRLAIAEETLEAIRQGEVDALVIFDSEGEKVFT--LQGSDYVYRLLIEQM 67

Query: 330 PIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAG---------GLSTLLDAPKLSDNN 379
                 +   G + Y N S   L K      I              +   +   +     
Sbjct: 68  KEGAATMTPDGFILYCNQSLADLVKQPLEKVIGSNFKQFICPKDLAICHPIFNHQGEIKT 127

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
             + + L   D   I      + +         +                      +   
Sbjct: 128 FDEEINLLTGDGREIPVYLSSNELIVEHNVIHYVVV-------------------TDLSQ 168

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
            + N+  +     Q     E    GIA++  +G  L  N +  ++ GYP  ++L K F  
Sbjct: 169 KKQNEAALRQSEEQFRKAFEYAPIGIALVGLDGQWLKVNSSFCQIVGYPEAELLSKKFQD 228

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YS 555
                  +V   Y+ +++  ++    E       K+  ++ +++    +  S+     + 
Sbjct: 229 LTVAEDLAVNIKYINQLIRGEMNA-YEIKKRYIHKDGHIVWVQLHSSLIRDSNGKPQHFI 287

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
             + DI++ +  +                K +F+A VSHE+RTPLT+I G   ++    +
Sbjct: 288 TQVEDITQRELME--------------QMKKNFIALVSHELRTPLTSIHGSLGLLAAGIY 333

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
               + +  +         N ++ +VND+L + +++S +  L  +  ++   + ++I  +
Sbjct: 334 DKAPD-KMKKMLQIAATQTNRLVALVNDILSLERMDSSRYKLSKQTCNVKTLIEQSIDAM 392

Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
              A +  I+ +T  AN   ++ A+  ++ Q+ +N+L+NAI F+P    I+IS       
Sbjct: 393 LGLAEQNSIIFKTDVAN--LKVWANADAIIQVLINLLNNAIKFSPPNTTIVISAELFEAS 450

Query: 736 ------------------------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
                                    V+ ++ D G G+   +LE   +PF QI +S     
Sbjct: 451 KSQTIKVPKACLSSTCDCSGSFYPYVLFKIEDQGRGIPPDKLETIFEPFLQIDSSDSREK 510

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
            GTGLGL +  +++  + G+ ++ S   +G++     PL 
Sbjct: 511 GGTGLGLAICHSIIKQHHGEIWVTSILGQGSIFYFTLPLS 550



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/125 (14%), Positives = 41/125 (32%), Gaps = 11/125 (8%)

Query: 73  TFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH 132
            F + PI   +     +   G   +++    + +G    +++  +  D++    +  N  
Sbjct: 186 AFEYAPIGIAL-----VGLDGQWLKVNSSFCQIVGYPEAELLSKKFQDLTVAEDLAVNIK 240

Query: 133 -IGDLLKRQ-NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVD 190
            I  L++ + N +  K      +G    V + L +  I   N +   F     V      
Sbjct: 241 YINQLIRGEMNAYEIKKRYIHKDGHI--VWVQLHSSLIRDSNGKPQHF--ITQVEDITQR 296

Query: 191 NDPRA 195
                
Sbjct: 297 ELMEQ 301



 Score = 46.6 bits (109), Expect = 0.019,   Method: Composition-based stats.
 Identities = 22/243 (9%), Positives = 72/243 (29%), Gaps = 11/243 (4%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150
             G++   ++ L   +     K+IG           +   + I +      T+  +  L 
Sbjct: 76  PDGFILYCNQSLADLVKQPLEKVIGSNFKQFICPKDLAICHPIFNHQGEIKTFDEEINLL 135

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
              G    +P+ L++  +         +    +V          A  ++ +++F    E 
Sbjct: 136 --TGDGREIPVYLSSNEL-IVEHNVIHYV---VVTDLSQKKQNEAALRQSEEQFRKAFEY 189

Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL-----TEYYAHKDDVLKTEKYPLLTSE 265
                ++           S    +    +   L         A    V       L+  E
Sbjct: 190 APIGIALVGLDGQWLKVNSSFCQIVGYPEAELLSKKFQDLTVAEDLAVNIKYINQLIRGE 249

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
            ++   ++ +   + +    + +   +++++ +   +++     +     ++ +      
Sbjct: 250 MNAYEIKKRYIHKDGHIVWVQLHSSLIRDSNGKPQHFITQVEDITQRELMEQMKKNFIAL 309

Query: 326 VDK 328
           V  
Sbjct: 310 VSH 312


>gi|262173308|ref|ZP_06040985.1| hypothetical protein VII_000398 [Vibrio mimicus MB-451]
 gi|261890666|gb|EEY36653.1| hypothetical protein VII_000398 [Vibrio mimicus MB-451]
          Length = 1053

 Score =  345 bits (885), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 115/423 (27%), Positives = 200/423 (47%), Gaps = 19/423 (4%)

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR--KMEIEVMQLCSILEATSDGIA 466
             L       E  ++  E           ++  I KR  ++ +      +I+E     +A
Sbjct: 115 RELWQEKGRDELLDELHETNRALAQHQAGLEQEIAKRTKELAVSEELSRTIIEGAPSSVA 174

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
           II+ +G+IL  N+     +GY  ++ L +P    L+   P  +   LT  L +D RQ L 
Sbjct: 175 IIDSQGLILLWNKTAITTYGYTADEALGQPLLTLLKMALPPELAAALTLPLRVDQRQLLN 234

Query: 527 K---ITLGSTKEEKLLSLR--IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE 581
           +        T++  L+ +   + I +L      ++ + D++  K  + +L+ AK  AE+ 
Sbjct: 235 EAFYEAETYTRDGTLVPIDLGVSIFELNGQCQAAMFLRDVTARKAAEQELNEAKAKAEEA 294

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
              KS FLA +SHEIRTP+ AIIG S +       P    +  +Y + I  S  L+L I+
Sbjct: 295 VEVKSMFLANMSHEIRTPMNAIIGMSHLALKTELTP----KQRDYVSKIHSSATLLLGII 350

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILAD 700
           ND+LD SKIE+GK+++     SL+E +     +    A +K + +  S    IP  ++ D
Sbjct: 351 NDILDFSKIEAGKLSIEHIEFSLEEVLHNVSMVTGQKAFDKGLELLFSLPREIPHKLIGD 410

Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDTGVGMTNYELEKA 756
              + Q+ +N+++NA+ FT  G +I +S      +    +++  V DTG+GMT  +    
Sbjct: 411 PLRIGQVVINLVNNAVKFTEQG-EISVSVQVGERQPGRIKLLFNVSDTGIGMTEKQTRNL 469

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI--IFPLYDTS 814
            + F Q   S   +  GTGLGL +++ +V+   G+  + S P  G+       F + +  
Sbjct: 470 FQAFTQADGSTTRKYGGTGLGLSISRRLVELMEGEISVTSKPDAGSCFTFNAWFDVDENQ 529

Query: 815 HPH 817
            PH
Sbjct: 530 APH 532



 Score = 39.6 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 26/205 (12%), Positives = 59/205 (28%), Gaps = 20/205 (9%)

Query: 35  ETEKSKKENPCHDSFEQ--SNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAH 92
           E  + +  +  H++      +     QE    T  L          I         ID+ 
Sbjct: 120 EKGRDELLDELHETNRALAQHQAGLEQEIAKRTKELAVSEELSRTIIEGAPSSVAIIDSQ 179

Query: 93  GYLKEISEELPKTIGNYAFKMIGMRL---------CDVSDILHIDPNNHIGDLLKRQNTW 143
           G +   ++    T G  A + +G  L          +++  L + P       L  +  +
Sbjct: 180 GLILLWNKTAITTYGYTADEALGQPLLTLLKMALPPELAAALTL-PLRVDQRQLLNEAFY 238

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +T  +  +GT + + + ++   I+  N +    +    +                  K
Sbjct: 239 EAET--YTRDGTLVPIDLGVS---IFELNGQ---CQAAMFLRDVTARKAAEQELNEAKAK 290

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQ 228
                E+K    +    +       
Sbjct: 291 AEEAVEVKSMFLANMSHEIRTPMNA 315


>gi|52080825|ref|YP_079616.1| two-component sensor histidine kinase ResE [Bacillus licheniformis
           ATCC 14580]
 gi|52786196|ref|YP_092025.1| ResE1 [Bacillus licheniformis ATCC 14580]
 gi|52004036|gb|AAU23978.1| two-component sensor histidine kinase ResE [Bacillus licheniformis
           ATCC 14580]
 gi|52348698|gb|AAU41332.1| ResE1 [Bacillus licheniformis ATCC 14580]
          Length = 593

 Score =  345 bits (885), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 87/364 (23%), Positives = 153/364 (42%), Gaps = 24/364 (6%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            +  E   L +IL + +DG+  IN +G IL TN    +           +   V      
Sbjct: 245 ALNQEKEHLSNILSSMADGVITINIDGTILVTNPPAERFL---QAWYYEQNMNVKEGHEL 301

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
           P          +S +  Q +E    G T     + L   +            + D++E +
Sbjct: 302 PPEARELFQNTVSTEKEQMIEMTLQGRT----WVLLMSPLYNQSHVRGAVAVLRDMTEER 357

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           +                  + DF+A VSHE+RTP++ + G+SE I +            E
Sbjct: 358 RL--------------DKLRKDFIANVSHELRTPISMLQGYSEAIVDDI--ASSEEEKKE 401

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
            A  I      +  +VNDLLD++++E+G ++L+ EPV L E            A +K I 
Sbjct: 402 IAQVIYDESLRMGRLVNDLLDLARMEAGHISLNVEPVELREFFERVFRKFYGVAGDKNIT 461

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +  +   +  + + D   ++Q+  N++ NAI  T +GG + +      +  + + V+D+G
Sbjct: 462 LSHNLDLHEAKFVFDPDKMEQVLTNLIDNAIRHTNAGGTVHVDVQSAESG-LKIAVKDSG 520

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
            G+   +L    + F +   ++     GTGLGL + K +VDA+ G   + S   +GT   
Sbjct: 521 SGIPEEDLPFIFERFYKADKARTRGKGGTGLGLAIVKNIVDAHNGSITVHSMLNEGTSFT 580

Query: 806 IIFP 809
              P
Sbjct: 581 FYIP 584


>gi|212638881|ref|YP_002315401.1| Redox sensor histidine kinase ResE [Anoxybacillus flavithermus WK1]
 gi|212560361|gb|ACJ33416.1| Redox sensor histidine kinase ResE [Anoxybacillus flavithermus WK1]
          Length = 587

 Score =  345 bits (885), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 90/365 (24%), Positives = 159/365 (43%), Gaps = 26/365 (7%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            +  E  QL SIL + +DG+  +NR G +L TN    +       +  ++   + L    
Sbjct: 248 ALNQEKEQLASILSSMADGVITLNRNGEVLITNPPADRFLQAWYYEQGQRDDLLPLPPQ- 306

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
              +N    + ++ +  Q +E    G       + +   +            + D++E +
Sbjct: 307 ---VNELFKKAVTEEKEQAIEMALQGRN----WVIVMTPLYNGKVIRGAVAVLRDMTEER 359

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           +                  + DF+A VSHE+RTP+  + G+SE I +       +    E
Sbjct: 360 RL--------------DKLRKDFIANVSHELRTPIAMLQGYSEAIVDDI--AATDEEKKE 403

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
            A  I      +  +VNDLLD++++E+G + LH E V L   V   I   Q  A EK + 
Sbjct: 404 LAKVIYDESLRMGRLVNDLLDLARMEAGHLMLHHEQVPLKPYVERIIHKFQALAKEKGVH 463

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +     + +  +  D   V+Q+  N++ NA+  T  GG++ +       E V + V+D+G
Sbjct: 464 LLVEMNDELI-VSFDPDRVEQVLTNLIDNALRHTDEGGEVRVIVD-ADEEVVRISVQDSG 521

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
            G+   +L    + F +   ++     GTGLGL +AK +V+A+ G   + S   +GT   
Sbjct: 522 SGIPEEDLPFVFERFYKADKARTRGRSGTGLGLAIAKNIVEAHKGTITVHSKLGEGTTFT 581

Query: 806 IIFPL 810
              PL
Sbjct: 582 FTLPL 586


>gi|77919621|ref|YP_357436.1| two component sensor histidine kinase [Pelobacter carbinolicus DSM
           2380]
 gi|77545704|gb|ABA89266.1| PAS/PAC sensor signal transduction histidine kinase [Pelobacter
           carbinolicus DSM 2380]
          Length = 613

 Score =  345 bits (885), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 96/570 (16%), Positives = 204/570 (35%), Gaps = 38/570 (6%)

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
           +   +D     ++             +      + +    + Y       + +    + +
Sbjct: 77  HIHPEDRTHAFKEMHRTLRSGQPTQLEYRVQHRDGHYVWVQDYSYVCCRGANDVCHIVGY 136

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364
             + S +       +L    +D       F    G L Y N SF+ +      +      
Sbjct: 137 LQNISDTKKHLNDLDLARRAIDSSINAIAFTDLEGCLSYVNRSFVRMMGIDKPETAIGRQ 196

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
            + TL   PK +                  A                          +  
Sbjct: 197 -VGTLWKNPKKARVVLRNLQKFGEWSGEVAALR--------PDGLLAYFEVSAHVVEDSG 247

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSK 483
                      +  + +  +++++    +   +  + SD I I +     I+  N A   
Sbjct: 248 GHPHCYMASFVDVTEQKKAEQEVQESEEKYRLLFSSCSDAIVIFDAGSLRIVDVNGAALD 307

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           L+GY  ++ L        E+   S +   + +I+S  LR     +     K+   + + +
Sbjct: 308 LYGYTRDEFLALDVLDLSEEPEQSRLR--MQQIISGTLRHFP--LVSHRRKDGTRVDVEV 363

Query: 544 IIKKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
            +    +     ++    D+SE ++ +                K D L+ VSHE+RTPLT
Sbjct: 364 SVGSFSWQKRQVFAGFFRDVSERQRIEE--------------LKDDMLSSVSHEMRTPLT 409

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           AI+GF++ +      P    R  +Y + I +    + ++V + L++ ++ +G       P
Sbjct: 410 AIMGFTDYLLKSNDRP---ERQKDYLSIIQQQSERLKELVENHLNLQRLRAGHGVGAIHP 466

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           V +   +    ++        R  IR     ++P +  D   + +   N+LSNAI ++  
Sbjct: 467 VEVLPLLHGVSNMFSS--ARGRDRIRIQCPEDLPPVRGDENQLYRALYNLLSNAIKYSSE 524

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
             +I++      +  V+  V+D GVG+ N         F ++  +      G+GLGL L 
Sbjct: 525 DQEILLGARRADDAAVLF-VKDQGVGIPNEHQATIFDRFFRV-PAGDHGMRGSGLGLSLV 582

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
           + ++ A+ G+ ++ S P +G+   +  PL+
Sbjct: 583 QEIIKAHNGRIWLDSVPGQGSCFYLKLPLF 612



 Score = 54.6 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 27/316 (8%), Positives = 83/316 (26%), Gaps = 22/316 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFK-MIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
            D  G L  ++    + +G    +  IG ++  +    +      +   L++   W G+ 
Sbjct: 167 TDLEGCLSYVNRSFVRMMGIDKPETAIGRQVGTLW--KNPKKARVVLRNLQKFGEWSGEV 224

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                +G  L    +++A  +         +    +              +  ++K+  L
Sbjct: 225 AALRPDG--LLAYFEVSAHVVEDSGGHPHCYMASFV--DVTEQKKAEQEVQESEEKYRLL 280

Query: 208 HEIKKGHSSVEKEKYDIF---SQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
                    +           +  +   +   +++  +L      ++      +   + S
Sbjct: 281 FSSCSDAIVIFDAGSLRIVDVNGAALDLYGYTRDEFLALDVLDLSEEPEQSRLRMQQIIS 340

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTL--QNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
                         +  +   +   G+   Q     +  +        +    D+  +  
Sbjct: 341 GTLRHFPLVSHRRKDGTRVDVEVSVGSFSWQKRQVFAGFFRDVSERQRIEELKDDMLSSV 400

Query: 323 PETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSV---------DDIEIAGGLSTLLDAP 373
              +         +    L  +N        Y S+         + +E    L  L    
Sbjct: 401 SHEMRTPLTAIMGF-TDYLLKSNDRPERQKDYLSIIQQQSERLKELVENHLNLQRLRAGH 459

Query: 374 KLSDNNAIKPVMLYRS 389
            +   + ++ + L   
Sbjct: 460 GVGAIHPVEVLPLLHG 475



 Score = 46.9 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 17/138 (12%), Positives = 46/138 (33%), Gaps = 8/138 (5%)

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI--LRKPFTVFLEQNTPSVMN 510
           +  ++ EA    +  +N  G  L  +    ++FG   E++    + + V +     +   
Sbjct: 28  KYQALAEAFGGVVYELNHPGGRLDWSDQCWRMFGITREEMGSDIQSWLVHIHPEDRTHAF 87

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSL----RIIIKKLPFSSCYSLTMHDISEWKQ 566
             +   L       L        ++   + +     +  +           + +IS+ K+
Sbjct: 88  KEMHRTLRSGQPTQL--EYRVQHRDGHYVWVQDYSYVCCRGANDVCHIVGYLQNISDTKK 145

Query: 567 EKNKLSHAKKIAEKESSH 584
             N L  A++  +   + 
Sbjct: 146 HLNDLDLARRAIDSSINA 163


>gi|303246174|ref|ZP_07332455.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
 gi|302492570|gb|EFL52441.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
          Length = 1620

 Score =  345 bits (884), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 124/638 (19%), Positives = 232/638 (36%), Gaps = 37/638 (5%)

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL-----------R 235
            +   +     + LD+  + +          ++   D+                     R
Sbjct: 344 IKASEEAAQNERFLDQLINSIAAGILIVDPADRTIVDVNDFALKLAGRDRNEVVGKVCHR 403

Query: 236 MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ-EDFHTINLNQYTKKQYFGTLQN 294
           +   V                 K  LLT E   +P      H +   +    + F  + +
Sbjct: 404 LTCPVEKDNCPILDLAQPRNMSKRTLLTKEGREIPILKTVSHIVRDGRELLLETFVDITD 463

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTK 353
             +   E    +    L     E        +D        + S G +   +P+   +  
Sbjct: 464 EERSREEL--EKTKKELEDKVTERTAHLRGIIDTANNGIIVIDSKGRITEFSPAASEIFG 521

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
           Y   + +     +S L+  P  S +       L       I     L   + +       
Sbjct: 522 YSREEIMGR--DISLLMPEPHKSKHAQYIRNYLNGGAPKVIGRQIVLDAQKKDGS---IF 576

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
                       ++M    +  +    +  + ++E E  +L  ILE +  G  ++    +
Sbjct: 577 PMEIALNTAVVNDDMIFVAVLRDVTVRKRMEEELENEQHRLQKILETSPVG-VVVTVNDV 635

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
               N++++ + G  V    R+          P      L  +      +  E       
Sbjct: 636 ARFANKSMAAM-GLSVGTQARR------AYADPVDRERMLALLAENGRVEHFETKFRARD 688

Query: 534 KEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
            E   + L                + DI+E K  +  L+ AK+ AE+ +  KSDFLA +S
Sbjct: 689 GEILDVILFCYDFDYHGERAILGWVIDITERKAAEEALAKAKEQAEEATKAKSDFLANMS 748

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HEIRTP+ AI+G S +            +  +Y   + RS   +L I+ND+LD SKIE+G
Sbjct: 749 HEIRTPMNAIMGLSHLALQTEL----TDKQRKYIEKVYRSAENLLGILNDILDFSKIEAG 804

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713
           K+++      L++      S+V L A E  + +      N+P ++ D   + QI +N+ +
Sbjct: 805 KLDMEHVAFHLEDVFENMASMVGLKAEEAGLELLFDLPGNMPTLVGDPLRLGQILINLGN 864

Query: 714 NAIHFTPSGGQIIISTTHTS----NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
           NA+ FTP G ++++S           ++   V+DTG+G++  + +K  + F Q   S   
Sbjct: 865 NAVKFTPRG-EVVVSARVIEETGTGAKLHFSVKDTGIGLSEEQRKKLFQHFSQADASTTR 923

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           +  G GLGL + K + +   G  ++ S P  G++    
Sbjct: 924 KYGGAGLGLAICKKLTELMGGDIWLESEPGMGSVFHFT 961



 Score = 65.4 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 51/436 (11%), Positives = 112/436 (25%), Gaps = 44/436 (10%)

Query: 161 IDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKE 220
           + L+AL I+  +      RG+ +      D        R  ++ +     + G   +   
Sbjct: 97  LSLSALAIWDEHGRIIFERGYDV--DGNEDQAMVERLVRKMEQAAPPPNPQDGIKGLALL 154

Query: 221 KYDIFSQQSPPPHLRMKNKVSSLTEYY-AHKDDVLKTEKYPLLTSEESSLPEQEDFHTIN 279
              + +     P L+       +     A        E+          L   E      
Sbjct: 155 DNGLLALVVKRPVLKSDASGPPIGAMLMAKLVTPRMLEELSESLGFSVHLESIEKKPAAF 214

Query: 280 LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG 339
             +     +      ++  +   L       ++           +               
Sbjct: 215 SGKLKGGFFIERPNKDAISATSSLEGVRREPVAVLTVVTNRDIGK------------RGE 262

Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399
            +               +  +     +  L     +S   A+   +              
Sbjct: 263 RITDV------YYAVIGLTILATCWLIYFLFYKKVVSRIEALSGQVSRLG------GKGD 310

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459
           L  +                       N     IE           +       L  ++ 
Sbjct: 311 LRRVHVEG--------NDEIHDLGAGINEMLASIEQARDGLIKASEEAAQNERFLDQLIN 362

Query: 460 ATSDGIAIINREGI-ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
           + + GI I++     I+  N    KL G    +++ K                    IL 
Sbjct: 363 SIAAGILIVDPADRTIVDVNDFALKLAGRDRNEVVGKVCHRLTCPVEKDNCP-----ILD 417

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL--TMHDISEWKQEKNKLSHAKK 576
           L   + + K TL  TKE + + +   +  +       L  T  DI++ ++ + +L   KK
Sbjct: 418 LAQPRNMSKRTLL-TKEGREIPILKTVSHIVRDGRELLLETFVDITDEERSREELEKTKK 476

Query: 577 IAEKESSHKSDFLARV 592
             E + + ++  L  +
Sbjct: 477 ELEDKVTERTAHLRGI 492



 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/200 (11%), Positives = 49/200 (24%), Gaps = 15/200 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNT-WYGK 146
           ID+ G + E S    +  G    +++G  +  +    H   +   I + L        G+
Sbjct: 503 IDSKGRITEFSPAASEIFGYSREEIMGRDISLLMPEPHKSKHAQYIRNYLNGGAPKVIGR 562

Query: 147 TTLWP---IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +      +G+   + I L    +              ++    V        +    +
Sbjct: 563 QIVLDAQKKDGSIFPMEIALNTAVVNDD------MIFVAVLRDVTVRKRMEEELENEQHR 616

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
              + E       V       F+ +S           +          +        LL 
Sbjct: 617 LQKILETSPVGVVVTVNDVARFANKSMAAMGLSVGTQARRAYADPVDRER----MLALLA 672

Query: 264 SEESSLPEQEDFHTINLNQY 283
                   +  F   +    
Sbjct: 673 ENGRVEHFETKFRARDGEIL 692



 Score = 47.3 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 41/371 (11%), Positives = 102/371 (27%), Gaps = 26/371 (7%)

Query: 89  IDAHGY-LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
           +D     + ++++   K  G    +++G     ++  +  D N  I DL + +N    K 
Sbjct: 371 VDPADRTIVDVNDFALKLAGRDRNEVVGKVCHRLTCPVEKD-NCPILDLAQPRNM--SKR 427

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
           TL   EG  + +   ++ + +    RE        I    R   +     K L+ K +  
Sbjct: 428 TLLTKEGREIPILKTVSHI-VRDG-RELLLETFVDITDEERSREELEKTKKELEDKVTER 485

Query: 208 HEIKKGHSSVE-------KEKYDIFSQQSPPPHL------RMKNKVSSLTEYYAHKD--D 252
               +G              K  I         +       +  +  SL     HK    
Sbjct: 486 TAHLRGIIDTANNGIIVIDSKGRITEFSPAASEIFGYSREEIMGRDISLLMPEPHKSKHA 545

Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYF--GTLQNNSKESFEYLSHRNHPS 310
                       +        D    + + +  +       + ++               
Sbjct: 546 QYIRNYLNGGAPKVIGRQIVLDAQKKDGSIFPMEIALNTAVVNDDMIFVAVLRDVTVRKR 605

Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLL---TKYKSVDDIEIAGGLS 367
           +    +  ++   + ++  P+   V  +    +AN S   +      ++           
Sbjct: 606 MEEELENEQHRLQKILETSPVGVVVTVNDVARFANKSMAAMGLSVGTQARRAYADPVDRE 665

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
            +L     +             D   +      +   ++ E ++    I   +     E 
Sbjct: 666 RMLALLAENGRVEHFETKFRARDGEILDVILFCYDFDYHGERAILGWVIDITERKAAEEA 725

Query: 428 MPQNGIEPEDV 438
           + +   + E+ 
Sbjct: 726 LAKAKEQAEEA 736


>gi|149182829|ref|ZP_01861290.1| phosphate regulon sensor protein [Bacillus sp. SG-1]
 gi|148849444|gb|EDL63633.1| phosphate regulon sensor protein [Bacillus sp. SG-1]
          Length = 576

 Score =  345 bits (884), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 90/396 (22%), Positives = 174/396 (43%), Gaps = 26/396 (6%)

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEI--EVMQLCSILEATSDGIAIINREGII 474
                    +           +   + + K     +  +L +++E    G+ +I+  G  
Sbjct: 195 RARTYEDRMDETSMLSTSINILARNLQEMKSAQDIQQNRLTTLIENMGSGLLLIDHRGYA 254

Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
           + TN+A  + F    E I  K +   ++      +N  + EI   + ++  +++ L  T 
Sbjct: 255 VLTNKAFKEFFSITAERITNKRYYEVIK---FPEVNKLVEEIFMTE-QKIRKQLLLPLTI 310

Query: 535 EEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
           E K   L                L  HDI+E K+ +                + DF+A V
Sbjct: 311 ERKHFELYGAPIIGTKEEWKGIVLVFHDITELKKLE--------------QMRKDFVANV 356

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHE+RTP+T+I GFSE + +             + N I R  + +  ++ DLLD+SK+E 
Sbjct: 357 SHELRTPITSIKGFSETLLDGAMN--DKETLEMFLNIILRESDRLQSLITDLLDLSKMEK 414

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712
               L+     + E + E I++++    +K I +       +     D   +KQ+ +N++
Sbjct: 415 QGFQLNVHETDMKELLIEVITILEKKPEKKDIELVLHADEAVLA-EVDSFRIKQVFINLI 473

Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
            NAI +TP+GG++ +S   + +  +++ VRD G+G+   E  +  + F ++  ++     
Sbjct: 474 GNAITYTPAGGEVSVSLKQSDS-VIVIEVRDNGIGIEESEFPRIFERFYRVDKARSRDSG 532

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           GTGLGL + K +++A+ G   + S   +GT   +  
Sbjct: 533 GTGLGLAIVKHLIEAHGGTIGVESKVNEGTTFTVTL 568


>gi|307151157|ref|YP_003886541.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306981385|gb|ADN13266.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 634

 Score =  345 bits (884), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 96/408 (23%), Positives = 174/408 (42%), Gaps = 16/408 (3%)

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
           + +  +         Q  E +         +  R  +        +     +   DG+ +
Sbjct: 95  DRAKGLNGGADAYLVQPVEAIELIATVKALLRIREAEEAALTSAREWQITFDTIRDGVGL 154

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
           ++ +G  +  N+A++KL   PV +++       L                    R+++E 
Sbjct: 155 LDSKGNFVRCNKAMTKLLDQPVHELIGNSHQDILHLILNESYMTPFIRAKETLQRESIEI 214

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
            +             III  +             + DI+E KQ + +     + +++ + 
Sbjct: 215 ESKNK-------WYNIIIDPILNQHRVLTGAVFIIVDITERKQIEKEREILYEESQRANR 267

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
            K +FLA +SHE+R+PL  I+G++ ++K  +F              I+R+ NL   ++ D
Sbjct: 268 IKDEFLAILSHELRSPLNPILGWASLLKTSKFNA---DTIKHGLEIIERNANLQTRLIED 324

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703
           LLD+S+I  GK+ L+  PV L   ++ A+ +VQL A  K I I T    N+  + AD   
Sbjct: 325 LLDVSRILRGKLILNTYPVELPSIIASALEIVQLSAKAKSIEIETKIDANVGAVQADPSR 384

Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
           ++Q+  N+LSNAI FTPSGG++ I           + + DTG G++   L      F Q 
Sbjct: 385 LQQVIWNLLSNAIKFTPSGGKVTIYLERIDK-YAQITISDTGKGISKEFLPYVFDYFRQA 443

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFPL 810
            ++   +  G GLGL +   +V+ + G     S    +G    +  P+
Sbjct: 444 DSTTTRKFGGLGLGLAIVHHLVELHGGTVQAQSAGEGQGASFIVRLPV 491



 Score = 40.0 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 41/467 (8%), Positives = 125/467 (26%), Gaps = 40/467 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D+ G     ++ + K +     ++IG    D+  ++  +    +   ++ + T   ++ 
Sbjct: 155 LDSKGNFVRCNKAMTKLLDQPVHELIGNSHQDILHLILNESY--MTPFIRAKETLQRESI 212

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +     + ID    PI +++R  +G     I+             + L ++    +
Sbjct: 213 EIESKNKWYNIIID----PILNQHRVLTGA--VFIIVDITERKQIEKEREILYEESQRAN 266

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
            IK    ++   +              +        +   H  ++++          E  
Sbjct: 267 RIKDEFLAILSHELRS-PLNPILGWASLLKTSKFNADTIKHGLEIIERNANLQTRLIEDL 325

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
           L          L   T      ++  ++ E  +  +      +    D           +
Sbjct: 326 LDVSRILRG-KLILNTYPVELPSIIASALEIVQLSAKAKSIEIETKIDANVGAVQADPSR 384

Query: 329 CPIPFFVYSHGNLFY------ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
                +      + +             + KY  +   +   G+S               
Sbjct: 385 LQQVIWNLLSNAIKFTPSGGKVTIYLERIDKYAQITISDTGKGISKEFLPYVFDYFRQAD 444

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
                +     +  +   H ++ +     A +    + A+                + +I
Sbjct: 445 STTTRKFGGLGLGLAIVHHLVELHGGTVQAQSAGEGQGASFIVRLPVIAPQSTTYKENKI 504

Query: 443 NKRKMEIE---------VMQLCSILEAT-----SDGIAIINREGIILSTNRAVSKLFGYP 488
           + + + ++            +   L        +D IA+ +        N+A+  L    
Sbjct: 505 STQTLSLQGLKVLVVDDEADMRDFLRFALQQYGADVIAVAD-------ANQALLALIDKH 557

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
            + +L     + +      +    + ++      Q           +
Sbjct: 558 PDILLS---DIGMPGMDGYMFIRQVRKLEPTQGGQIPAIALTAYAGD 601


>gi|221066757|ref|ZP_03542862.1| PAS/PAC sensor signal transduction histidine kinase [Comamonas
           testosteroni KF-1]
 gi|220711780|gb|EED67148.1| PAS/PAC sensor signal transduction histidine kinase [Comamonas
           testosteroni KF-1]
          Length = 837

 Score =  345 bits (884), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 104/531 (19%), Positives = 205/531 (38%), Gaps = 24/531 (4%)

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKS 356
              + ++ +      A     E      +       F      L  + N  + +LT   S
Sbjct: 323 RKLQRVARQAMDRSQARLARSEQELAVLMRSVQELIFRTDKDGLLTFVNARWEMLTGQSS 382

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
              +         L   K+ +      V +     +  +               +     
Sbjct: 383 KMALG--------LRFEKIVEPQCRNQVKVLLDANSQQSLRTCQAFFSLPNGKEILCEIA 434

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476
                 +  + +   G   +       +  ++ ++     + E T   + I + +  I  
Sbjct: 435 VVPLIKK-GQIVGFAGSAVDVTARWKAQHDLQTQLAFQHLLFETTPLPLLITDEKNSITL 493

Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
            NRA  +  G     I+ K        +  S+      ++L    +  ++   +      
Sbjct: 494 VNRAWEEFSGVSALQIMGKYLKDVCSCDNASMQLMINQKVLDSGQKAVIDAKII--HANG 551

Query: 537 KLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
               ++I    +  S            D+++++  +     A+  AE+    KS+F+A +
Sbjct: 552 YYRDMQITKAAIKDSRGKATGVLSIFVDVTDFRAAEQATREARDAAEEAFRVKSEFVANM 611

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHE+RTPL +IIGF+E+          +P++ E  N I  +G  +L +VNDLLD++K+ES
Sbjct: 612 SHELRTPLQSIIGFAEL---GHLRSRKSPQFSEMFNDIHSAGQRMLALVNDLLDVAKLES 668

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712
               +H E + L   +      ++   ++K+I +R    N      AD    +Q+  N+L
Sbjct: 669 AVGVIHLERIDLRGLIRPIARELEPLQHQKQIDLRLDLENFPMIAKADPVRFQQVVRNML 728

Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           +NAI F+P+ G++ +      +  + +   D G G+   EL++  +PF Q  +  +    
Sbjct: 729 ANAIKFSPNHGRVDVIGRFDDHGNICIDFSDQGPGIPPQELDQIFQPFVQ-SSKTKDGSG 787

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP---LYDTSHPHDCI 820
           GTGLGL + + ++DA  G     + P  G +  I  P   +Y+T  P + I
Sbjct: 788 GTGLGLAICRKIIDAMDGTISAKNKPDGGAIFRITLPSRSVYET-QPGELI 837



 Score = 40.4 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/250 (7%), Positives = 61/250 (24%), Gaps = 15/250 (6%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL-----LKR 139
             +  D  G L  ++       G  +   +G+R   + +    +    + D      L+ 
Sbjct: 357 LIFRTDKDGLLTFVNARWEMLTGQSSKMALGLRFEKIVEPQCRNQVKVLLDANSQQSLRT 416

Query: 140 QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND-PRALGK 198
              ++              +  ++A +P+  +  +  GF G  +    R           
Sbjct: 417 CQAFFSLP-------NGKEILCEIAVVPL-IKKGQIVGFAGSAVDVTARWKAQHDLQTQL 468

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
                      +    +  +     +         +     +    +     D+      
Sbjct: 469 AFQHLLFETTPLPLLITDEKNSITLVNRAWEEFSGVSALQIMGKYLKDVCSCDNASMQLM 528

Query: 259 YPLLTSEESSLPEQED-FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
                 +       +      N      +     ++++  ++   LS     +     ++
Sbjct: 529 INQKVLDSGQKAVIDAKIIHANGYYRDMQITKAAIKDSRGKATGVLSIFVDVTDFRAAEQ 588

Query: 318 GENLTPETVD 327
                 +  +
Sbjct: 589 ATREARDAAE 598


>gi|157376076|ref|YP_001474676.1| putative PAS/PAC sensor protein [Shewanella sediminis HAW-EB3]
 gi|157318450|gb|ABV37548.1| putative PAS/PAC sensor protein [Shewanella sediminis HAW-EB3]
          Length = 1169

 Score =  345 bits (884), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 111/509 (21%), Positives = 201/509 (39%), Gaps = 23/509 (4%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
               +  +         ++     F +    G +   N +   L +Y+  + I     + 
Sbjct: 224 EKNRSDLESANTRLSTILETAVDGFIIVDTSGVITQVNSAVCRLFEYELDELIGENVSIF 283

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
                  + D    + +   R  R     +A          +                  
Sbjct: 284 MPTHERHMHDGFMSRFIQSARDARKGRELTA-------QNRSGEQFPIELSISRMTIENE 336

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
               G+  +  D +  +         L + LEA+ D +  I+  G I   N A  KLFG+
Sbjct: 337 TMLLGLVKDLSDIKRKEVAALRTETILLATLEASQDALITIDITGRIQEFNDAACKLFGH 396

Query: 488 PVEDILRKPFTVF-LEQNTPSVMNHYLTEILSLDLRQTLEK--ITLGSTKEEKLLSLRI- 543
             E  L +                  +           ++K    +   ++     + + 
Sbjct: 397 KREQALGELLEDLIFVDIEKKNFKQGIQLFRQTGEGPAIKKSIEMMSVKRDGSSFPVEMK 456

Query: 544 -IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
            I  +L      +  +HDIS+  + + +L  AK  AE  S  KS FLA +SHEIR+PL A
Sbjct: 457 MIPVQLGEEILLTAFVHDISKRIEYETQLKQAKDQAESGSKAKSRFLATMSHEIRSPLNA 516

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           ++G  E++ + +     N     YA+    +G  +L  +ND+LD SKIE+G+M L     
Sbjct: 517 VLGSVELMLDSKL----NKEQRIYAHTAKEAGTALLSTINDILDFSKIEAGQMMLESVSF 572

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPS 721
           S  + V++ + ++   A+EK I +      N+P  +  D + ++Q+  N++ NAI F+ S
Sbjct: 573 SPAKIVAQVLRILAPNAHEKGINLACFINRNVPELVKGDPQRLRQVIHNLVDNAIKFS-S 631

Query: 722 GGQIIISTTHTS--NEEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
           GG + +        +EEV L   V D G+G++    +K  K F Q+ +      +G+GLG
Sbjct: 632 GGCVSVEMWIPDSHHEEVQLYCAVTDEGIGVSMAAQKKLFKEFSQVHDQHNTNYKGSGLG 691

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           L +   +++   GK  + S    G+    
Sbjct: 692 LAICAELIEMMGGKIELSSRLGHGSCFRF 720



 Score = 38.9 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 14/145 (9%), Positives = 36/145 (24%), Gaps = 7/145 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL--KRQNTWYGK 146
           +D  G + +++  + +       ++IG  +           ++          ++   G+
Sbjct: 251 VDTSGVITQVNSAVCRLFEYELDELIGENVSIFMPTHERHMHDGFMSRFIQSARDARKGR 310

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                   +    PI+L+   +   N         G+V              R +     
Sbjct: 311 ELTAQNR-SGEQFPIELSISRMTIENETML----LGLVKDLSDIKRKEVAALRTETILLA 365

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPP 231
             E  +           I       
Sbjct: 366 TLEASQDALITIDITGRIQEFNDAA 390


>gi|37522318|ref|NP_925695.1| two-component hybrid sensor and regulator [Gloeobacter violaceus PCC
            7421]
 gi|35213318|dbj|BAC90690.1| two-component hybrid sensor and regulator [Gloeobacter violaceus PCC
            7421]
          Length = 1296

 Score =  345 bits (884), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 103/611 (16%), Positives = 213/611 (34%), Gaps = 29/611 (4%)

Query: 227  QQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKK 286
            +       RM + V +           L         +    +                +
Sbjct: 688  EALAAVERRMPDLVLTDVMMPRLDGFGLLAALRTDERTRALPVIVLSARAGEEATLAGLE 747

Query: 287  QYFGTLQNNSKESFEYLSHRNHPSLSAYFD-EGENLTPETVDKCPIPFFVYSHGNLFYAN 345
            +      +    + E L         +    E   L   + ++  +   V   G   +  
Sbjct: 748  RGADDYLSKPFAARELLGRVKANLELSRLRGETARLLHASEERARLAIRVGRLGTWRFVP 807

Query: 346  PSFLLLTKYKSVDDIEIAGGLSTL-----LDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400
             S +     +  +          L     ++    +D   +   +    D          
Sbjct: 808  TSGVATMDERMREIWGEPEDTFQLSLAQAMERIHPADRERVSQAVDAALDPASAGTLEID 867

Query: 401  HTIQWNRENSLAMTFIPFE----KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
            + I W   +   ++                 +   G   +  + +  ++ +     +   
Sbjct: 868  YRIVWPNGSERWVSANGQVFFEQTEAGSRRAVDFIGTALDITERKRIEQALAGSEQRYRL 927

Query: 457  ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
            + E+    +   +  G +L  N   S+  G+ +E + +  +   +       +    T  
Sbjct: 928  LAESIPQLVWTADVGGTLLDVNGRWSQYTGFTLEQVKKSGWESVVHPEDVPGLRRQWTAA 987

Query: 517  LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLS 572
            +                 +            L         +  T  DI E KQ + +  
Sbjct: 988  IK--AVAAYRAEGRMRRTDGTYRWHLHQAMPLMDGEGRILKWFGTATDIEERKQLEAERE 1045

Query: 573  H-------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
                    A++ AE  +  K +FLA + HE+RTPL  IIG++++++  + GP    ++ +
Sbjct: 1046 QLLERAEQAREAAEAANRTKDEFLAILGHELRTPLNPIIGWTQMLRRGKVGP---DKHDQ 1102

Query: 626  YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
                I+R+  L   +++DLLD+S+I  G + +  +P++L   V  A+  V+  A +K++ 
Sbjct: 1103 ALEIIERNARLQTQLIDDLLDVSRIMRGSLRIAPQPITLAAIVVCALEAVRGLAEQKQVQ 1162

Query: 686  IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
            +        P + AD   ++Q+  N+L+NA+ FTP+GGQ+ +    +      L + DTG
Sbjct: 1163 LFEQLRTTAP-LSADPTRLQQVVWNLLTNAVKFTPAGGQVQVRLE-SGGGMARLTISDTG 1220

Query: 746  VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLI 804
            VG+    L    + F Q         +G GLGL + + +V+A+ G     S    KG   
Sbjct: 1221 VGIPAEFLPHLFERFRQADTKSTREQKGLGLGLFIVRHIVEAHGGTVQAESEGEGKGAAF 1280

Query: 805  EIIFPLYDTSH 815
             ++ PL   + 
Sbjct: 1281 TVVLPLGGEAQ 1291



 Score =  246 bits (629), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 68/255 (26%), Positives = 114/255 (44%), Gaps = 5/255 (1%)

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           +         +   +    K+ F + VSHE RTPL+ ++G  E +              E
Sbjct: 354 RAYEAECRRAEALAEIDRAKTVFFSNVSHEFRTPLSLLLGPLEDVLAGDGISAPT---RE 410

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
                 R+G  +L +VN LLD S+IE+G++  +F P  L    ++ +S+ +    +  + 
Sbjct: 411 QLTLAQRNGRRLLKLVNTLLDFSRIEAGRIQANFLPTDLASLTAQLVSVFRSAVEKAGLR 470

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +          +  D    ++I LN+LSNA  FT  G QI +     +  EV L + DTG
Sbjct: 471 LVIDCPPLAEAVYVDRDMWEKIVLNLLSNAFKFTLRG-QIAVRLRQQT-GEVCLELEDTG 528

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           VG+  +EL +    F ++        EG+G+GL L   +V+ + GK  + S   +G+   
Sbjct: 529 VGIAAHELPRIFDRFHRVAGVAGRSHEGSGIGLALVAELVEIHGGKVSVQSVSGRGSTFT 588

Query: 806 IIFPLYDTSHPHDCI 820
           +  P      P D I
Sbjct: 589 VRLPTGTAHLPADRI 603



 Score = 62.7 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/358 (8%), Positives = 73/358 (20%), Gaps = 20/358 (5%)

Query: 68   LDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI 127
              SE  +         +  W  D  G L +++    +  G    ++       V     +
Sbjct: 919  AGSEQRYRLLAESIP-QLVWTADVGGTLLDVNGRWSQYTGFTLEQVKKSGWESVVHPEDV 977

Query: 128  DPNNHIG-DLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHV 186
                      +K    +  +  +   +GT  +      A+P+          + FG    
Sbjct: 978  PGLRRQWTAAIKAVAAYRAEGRMRRTDGTYRWHLHQ--AMPLMDGEGRI--LKWFGTATD 1033

Query: 187  NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR---MKNKVSSL 243
                    A  ++L ++     E  +  +  + E   I   +   P          +   
Sbjct: 1034 IEERKQLEAEREQLLERAEQAREAAEAANRTKDEFLAILGHELRTPLNPIIGWTQMLRRG 1093

Query: 244  TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303
                   D  L+  +       +      +    +  +     Q                
Sbjct: 1094 KVGPDKHDQALEIIERNARLQTQLIDDLLDVSRIMRGSLRIAPQPITLAAIVVCALEAVR 1153

Query: 304  SHRNHP--------SLSAYFDEGENLTPETV-DKCPIPFFVYSHGNLFYANPSFLLLTKY 354
                            +A          + V +           G               
Sbjct: 1154 GLAEQKQVQLFEQLRTTAPLSADPTRLQQVVWNLLTNAVKFTPAGGQVQV--RLESGGGM 1211

Query: 355  KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
              +   +   G+                           +      H ++ +     A
Sbjct: 1212 ARLTISDTGVGIPAEFLPHLFERFRQADTKSTREQKGLGLGLFIVRHIVEAHGGTVQA 1269



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 57/495 (11%), Positives = 121/495 (24%), Gaps = 44/495 (8%)

Query: 99  SEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL--WPIEGTN 156
           ++    T+G      +G     V   +  D    I  +LK     Y +  L      G  
Sbjct: 91  NDAYRPTLGIKHPWALGHPAQQVWKEIWRDIAPRIETVLKTGEATYDEALLLFLERSGFP 150

Query: 157 LYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSS 216
                  +  P+     E +G     +V               L +  S L   +     
Sbjct: 151 EETYHTFSYSPLADEAGEVAGM--LCVVTEETERVIGERRMALLRELASDLAATQTQEEV 208

Query: 217 VEKEKYDIFSQQSPPPHLRM----KNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ 272
               +  +       P   M     +         A   +       P++       P  
Sbjct: 209 FAAVQRQVGKYSKDLPFTLMYLFDSDAGGRARLAAATGIEAKHPGARPIIDPATYGGPWS 268

Query: 273 EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP-- 330
                          + G L  N               +       E      V      
Sbjct: 269 AHKLWEGAPPILLNDFEGQLGGNPPSGGWDKPPHQVSVVPIKSQGQERPAGFLVAALNPY 328

Query: 331 -------IPFFVYSHGNLFY--ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
                    F     G +    AN       + +  + +       T+  +    +    
Sbjct: 329 RRYDAEYAGFVDLLTGQIAAGLANARAYE-AECRRAEALAEIDRAKTVFFSNVSHEFRTP 387

Query: 382 KPVML------YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
             ++L         D        +L   Q N    L +     + +      +  N +  
Sbjct: 388 LSLLLGPLEDVLAGDGISAPTREQLTLAQRNGRRLLKLVNTLLDFSRIEAGRIQANFLPT 447

Query: 436 E---DVDTRINKRKMEIEVMQLCSILEA--TSDGIAIINREGIILSTNRAVSKLFGYPVE 490
           +        ++  +  +E   L  +++    ++ + + +R+       + V  L     +
Sbjct: 448 DLASLTAQLVSVFRSAVEKAGLRLVIDCPPLAEAVYV-DRD----MWEKIVLNLLSNAFK 502

Query: 491 DILRKPFTVFLEQNTPSVMNHYLT---EILSLDLRQTLEK-----ITLGSTKEEKLLSLR 542
             LR    V L Q T  V          I + +L +  ++        G + E   + L 
Sbjct: 503 FTLRGQIAVRLRQQTGEVCLELEDTGVGIAAHELPRIFDRFHRVAGVAGRSHEGSGIGLA 562

Query: 543 IIIKKLPFSSCYSLT 557
           ++ + +         
Sbjct: 563 LVAELVEIHGGKVSV 577


>gi|297544880|ref|YP_003677182.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|296842655|gb|ADH61171.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 456

 Score =  345 bits (884), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 84/370 (22%), Positives = 169/370 (45%), Gaps = 24/370 (6%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           ++   ++     +L +IL++  +G+   +    IL  N A  K+     + ++ K     
Sbjct: 101 KVTIEELNDRNAKLEAILKSIVNGVIAFDNNERILLINDAAKKILNIKGKYLIGKHILEI 160

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-CYSLTMH 559
           +     S +     ++       +         K  K+ +   I+  +   +  + L + 
Sbjct: 161 VR---NSKLYDLFEDVKKNKNSPSKSLELNVFNKHLKVYT-SPILHPISHQNLGFVLIID 216

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           DI+E ++ +                +++F+A VSHE+RTPLT+I GF E +   R G + 
Sbjct: 217 DITEMRRLE--------------KIRNEFVANVSHELRTPLTSIRGFIETL---RNGAIE 259

Query: 620 NPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
           NP   + + + ID     +  ++ND+L +S+IE+ K     E   LD  + + + ++   
Sbjct: 260 NPEARDKFLDIIDFESERLTRLINDILTLSEIENVKEGYPTEETELDNEIEDILYIMDKM 319

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738
           A  K I +          I  +     Q+ +N++ N I +TP GG + +ST     +++I
Sbjct: 320 ARNKNITLIKDLNCPGLVINTNKDRFHQMMINLIDNGIKYTPEGGFVKVSTR-EEGDKII 378

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           + V+D G+G++   + +  + F ++  S+  +  GTGLGL + K +V++  G+  + S  
Sbjct: 379 IEVKDNGIGISKENIPRLFERFYRVDKSRSRKLGGTGLGLAIVKHIVESMKGEISVESEV 438

Query: 799 AKGTLIEIIF 808
            KGT   + F
Sbjct: 439 GKGTKFIMKF 448


>gi|298489822|ref|YP_003719999.1| multi-sensor signal transduction histidine kinase ['Nostoc azollae'
           0708]
 gi|298231740|gb|ADI62876.1| multi-sensor signal transduction histidine kinase ['Nostoc azollae'
           0708]
          Length = 884

 Score =  345 bits (884), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 96/647 (14%), Positives = 232/647 (35%), Gaps = 32/647 (4%)

Query: 184 VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKN-KVSS 242
             +        AL        S +    +   +++          +          +V  
Sbjct: 251 AEIVERQRTEAALRHTNQTLQSLIAASPRAIFTLDLHNNVKMWNPAAERMFGWSETEVLD 310

Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302
                   +     +    +    +    +      + +          L N+       
Sbjct: 311 QPNPIMSAELEEYEKIKETVIQGITPPSVEVRQRKKDNSLIDIVFSAAPLHNSEGVISGM 370

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-------NLFYANPSFLLLTKYK 355
           ++     +      E        V        +            + Y N +F  +T Y 
Sbjct: 371 VAVVADITEQKRQAEQVRFLESVVVNTNDAVLITEAEPIDEPVPRILYINEAFTRMTGYS 430

Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
             + +    G+   L  PK +     +   +  +  +  + +      + +      +  
Sbjct: 431 PEEVLGKTPGI---LQGPKTTGAVLDQ---VRTALFSRESVTVEAINYRKDGSE-FWVES 483

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
                A++         I+ +  + +  ++ +     +  S++E   D I I++ +G I 
Sbjct: 484 SIVPVADKTGYYTHWISIQRDVSERKRIEQALRCSEERFRSLIENALDVITILDTDGTIH 543

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
             + +V K+ GY   +++ + F  ++  +      + +T  +       L        ++
Sbjct: 544 YMSPSVEKVLGYRSVELINQNFFAWIHPDDFVATCYNITNAIKN-PDVPLPVEFRYRHQD 602

Query: 536 EKLLSLRIIIKKLPFSSCYSLTM---HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
           +   +L  I +K   +S  +  +    DI+E K+ +      ++  ++ S+ K  F +  
Sbjct: 603 DSWRTLEAISQKFVDNSELTSIVVNSRDITERKRLEEVRLALERE-KELSAMKIRFFSMA 661

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHE RTPL+  +  +++++N         +       I  S   ++ +++D+L I++ E+
Sbjct: 662 SHEFRTPLSTALAAAQLLENSPHAWENGGKRSRNLRRIQDSVKNMVQLLDDILTINRAET 721

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP--------RILADLRSV 704
           G +  + + + L+    + +  ++L    + I +  +  +           +   D + +
Sbjct: 722 GNLEFNPQWLDLERFCRQFVEEIRLSNTSEYI-LTFTCDSVPWRNTVEQWQQAYLDEKLL 780

Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764
           + I  N+LSNAI ++P   Q+        + +VI+++ D G+G++  + ++  +PF +  
Sbjct: 781 RSILGNLLSNAIKYSPEKTQVDFCLNF-DHNQVIIQISDHGIGISTTDQDQLFEPFHRGH 839

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
           N       GTGLGL + K  VD + G   I S    GT + +  PL 
Sbjct: 840 N--VRNIAGTGLGLVVVKKCVDLHGGHLNIVSELGHGTTVTVTLPLA 884



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 28/244 (11%), Positives = 76/244 (31%), Gaps = 9/244 (3%)

Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML-YRSDRTCIAASARLHTIQ 404
                + +  + + +  +  L  LL A + S+    +   +          A A   +  
Sbjct: 161 QEVRKVRETDNSESLHPSPHLWGLLIAHQCSNVRQWQTWEVELMKQLATQVAIAIQQSEL 220

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
           + +   L        +            +  E V+ +  +  +      L S++ A+   
Sbjct: 221 YEQLQQLNAQLEHRVQQRTEELARTNTSLRAEIVERQRTEAALRHTNQTLQSLIAASPRA 280

Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
           I  ++    +   N A  ++FG+   ++L +P    +              ++      +
Sbjct: 281 IFTLDLHNNVKMWNPAAERMFGWSETEVLDQP--NPIMSAELEEYEKIKETVIQGITPPS 338

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAEK 580
           +        K+  L+ +      L  S          + DI+E K++  ++   + +   
Sbjct: 339 V--EVRQRKKDNSLIDIVFSAAPLHNSEGVISGMVAVVADITEQKRQAEQVRFLESVVVN 396

Query: 581 ESSH 584
            +  
Sbjct: 397 TNDA 400



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 47/476 (9%), Positives = 132/476 (27%), Gaps = 62/476 (13%)

Query: 84  RFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD-LLKRQNT 142
           R  + +D H  +K  +    +  G    +++            ++    I + +++    
Sbjct: 279 RAIFTLDLHNNVKMWNPAAERMFGWSETEVLDQPNP--IMSAELEEYEKIKETVIQGITP 336

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
              +      + +   + I  +A P+++     SG     +V             + L+ 
Sbjct: 337 PSVEVRQRKKDNSL--IDIVFSAAPLHNSEGVISGM--VAVVADITEQKRQAEQVRFLES 392

Query: 203 KFSHLHEIKKGHSS--VEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEK 258
              + ++      +  +++    I         +      +V   T              
Sbjct: 393 VVVNTNDAVLITEAEPIDEPVPRILYINEAFTRMTGYSPEEVLGKTPGILQGPKTTGAVL 452

Query: 259 YPLLTSE--ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
             + T+     S+  +   +  + +++  +     + + +     ++S +   S     +
Sbjct: 453 DQVRTALFSRESVTVEAINYRKDGSEFWVESSIVPVADKTGYYTHWISIQRDVSERKRIE 512

Query: 317 EGEN----LTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLS---- 367
           +            ++       +    G + Y +PS   +  Y+SV+ I           
Sbjct: 513 QALRCSEERFRSLIENALDVITILDTDGTIHYMSPSVEKVLGYRSVELINQNFFAWIHPD 572

Query: 368 -------TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE-NSLAMTFIPFE 419
                   + +A K  D            D +     A       N E  S+ +      
Sbjct: 573 DFVATCYNITNAIKNPDVPLPVEFRYRHQDDSWRTLEAISQKFVDNSELTSIVVNSRDIT 632

Query: 420 KANQFPENMPQNGIEPEDVDTR------------------INKRKMEI-----------E 450
           +  +  E       E E    +                  +   ++              
Sbjct: 633 ERKRLEEVRLALEREKELSAMKIRFFSMASHEFRTPLSTALAAAQLLENSPHAWENGGKR 692

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
              L  I ++  + + +++    IL+ NRA +    +  + +  + F     +   
Sbjct: 693 SRNLRRIQDSVKNMVQLLDD---ILTINRAETGNLEFNPQWLDLERFCRQFVEEIR 745



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 43/396 (10%), Positives = 113/396 (28%), Gaps = 26/396 (6%)

Query: 77  DPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGD 135
           +PI   V           +  I+E   +  G    +++G     +          + +  
Sbjct: 407 EPIDEPVP---------RILYINEAFTRMTGYSPEEVLGKTPGILQGPKTTGAVLDQVRT 457

Query: 136 LLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA 195
            L  + +   +   +  +G+     ++ + +P+  +   ++ +    I            
Sbjct: 458 ALFSRESVTVEAINYRKDGS--EFWVESSIVPVADKTGYYTHW--ISIQRDVSERKRIEQ 513

Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP---HLRMKNKVSSLTEYYAHKDD 252
             +  +++F  L E      ++      I             R    ++     + H DD
Sbjct: 514 ALRCSEERFRSLIENALDVITILDTDGTIHYMSPSVEKVLGYRSVELINQNFFAWIHPDD 573

Query: 253 VLKT--EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310
            + T       + + +  LP +  +   + +  T +       +NS E    + +    +
Sbjct: 574 FVATCYNITNAIKNPDVPLPVEFRYRHQDDSWRTLEAISQKFVDNS-ELTSIVVNSRDIT 632

Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANP-----SFLLLTKYKSVDDIEIAGG 365
                +E         +   +    +S  +  +  P     +   L +       E  G 
Sbjct: 633 ERKRLEEVRLALEREKELSAMKIRFFSMASHEFRTPLSTALAAAQLLENSPHAW-ENGGK 691

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
            S  L   + S  N ++ +    +       +   +    + E            +N   
Sbjct: 692 RSRNLRRIQDSVKNMVQLLDDILTINRAETGNLEFNPQWLDLERFCRQFVEEIRLSNTSE 751

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
             +          +T    ++  ++   L SIL   
Sbjct: 752 YILTFTCDSVPWRNTVEQWQQAYLDEKLLRSILGNL 787


>gi|325106899|ref|YP_004267967.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
           5305]
 gi|324967167|gb|ADY57945.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
           5305]
          Length = 929

 Score =  345 bits (884), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 100/388 (25%), Positives = 171/388 (44%), Gaps = 16/388 (4%)

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRK 495
                  +  +  E   L ++LE   D I   + E      + +++ L       +I+ K
Sbjct: 124 IAQRDQIQDALLNEKFLLQTLLEHLPDAIYFKDAESRFTRVSGSMATLLKVKDASEIVGK 183

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-- 553
               F  +   +        +L       + K  +    + +   +      L       
Sbjct: 184 SDADFFPKEFAAEAYSDEQWLLETG-SMMIGKEEMPIWADGRQTWVSTTKGVLRDVEGNV 242

Query: 554 --YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
                  HDI+  K  + +L  AK+ AE  +  KSDFLA +SHEIRTP+ AIIG SE++ 
Sbjct: 243 IGTFGISHDITRQKNAEQELKAAKEAAESANRAKSDFLANMSHEIRTPMNAIIGMSELLL 302

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
           +         +   Y   +  S   +L I+N++LD SKIE+G + L +E + L + V E 
Sbjct: 303 DSEL----QHQQDVYVRTVLDSAESLLSIINEILDFSKIEAGHLELSWERIDLRDLVVET 358

Query: 672 ISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
           +  +   A+ K + +      +IP++ + D   ++QI +N++ NAI FT +G +I++   
Sbjct: 359 LRSLAARAHRKGLELAWRVDPSIPQVVMGDPVRIRQILMNLVGNAIKFTEAG-EIVVQVK 417

Query: 731 H----TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
                T + E+   VRDTG+G+    L+K    F Q   S   +  GTGLGL +A  +  
Sbjct: 418 SLEMSTDSVELHFEVRDTGIGIQQDRLQKIFDAFEQADASTTRQFGGTGLGLAIASRLAS 477

Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           A  G  +  S   +G++      L  +S
Sbjct: 478 AMGGMIWAESMLGQGSVFHFKIQLTSSS 505



 Score = 60.0 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 60/482 (12%), Positives = 122/482 (25%), Gaps = 54/482 (11%)

Query: 90  DAHGYLKEISEELPKTIG-NYAFKMIGMRLCDVSD-ILHIDPNNHIGDLLKRQNTWYGKT 147
           DA      +S  +   +    A +++G    D        +  +    LL+  +   GK 
Sbjct: 156 DAESRFTRVSGSMATLLKVKDASEIVGKSDADFFPKEFAAEAYSDEQWLLETGSMMIGKE 215

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
              PI        +      +        G   FGI H      +     K   +     
Sbjct: 216 -EMPIWADGRQTWVSTTKGVLRDVEGNVIGT--FGISHDITRQKNAEQELKAAKEAAESA 272

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
           +  K    +    +         P +  +      L     H+ DV          S  S
Sbjct: 273 NRAKSDFLANMSHEIRT------PMNAIIGMSELLLDSELQHQQDVYVRTVLDSAESLLS 326

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
            + E  DF  I             L++   E+   L+ R H          +   P+ V 
Sbjct: 327 IINEILDFSKIEAGHLELSWERIDLRDLVVETLRSLAARAHRKGLELAWRVDPSIPQVVM 386

Query: 328 KCPIP---FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
             P+      +   GN      +  ++ + KS++         ++    ++ D       
Sbjct: 387 GDPVRIRQILMNLVGNAIKFTEAGEIVVQVKSLEM-----STDSVELHFEVRDTGIGIQQ 441

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
              +         A   T +      L +       +        ++ +    V     +
Sbjct: 442 DRLQKIFDAFE-QADASTTRQFGGTGLGLAIASRLASAMGGMIWAESMLGQGSVFHFKIQ 500

Query: 445 RKMEIEVMQLCSILEATSD----GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
                    L S ++   D     + +++       TN    +L    + +      T  
Sbjct: 501 LTSSSRNEILDSQVDVLPDLDSRPVLVVDDN----ETN----RLLLQDMLNSWGLEVTSM 552

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT--M 558
                       L                        +L L +    +P    ++L   +
Sbjct: 553 SRAADALAYLEAL--------------------PAGNVLPLLVSDVNMPGMDGFTLVETI 592

Query: 559 HD 560
            D
Sbjct: 593 RD 594



 Score = 42.7 bits (99), Expect = 0.23,   Method: Composition-based stats.
 Identities = 11/144 (7%), Positives = 34/144 (23%), Gaps = 6/144 (4%)

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIA 363
                 +       + L    ++  P   +           + S   L K K   +I   
Sbjct: 124 IAQRDQIQDALLNEKFLLQTLLEHLPDAIYFKDAESRFTRVSGSMATLLKVKDASEIVGK 183

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
                       ++  + +  +L             +    W       ++       + 
Sbjct: 184 SDAD-FFPKEFAAEAYSDEQWLLETGSMMIGKEEMPI----WADGRQTWVSTTKGVLRDV 238

Query: 424 FPENMPQNGIEPEDVDTRINKRKM 447
               +   GI  +    +  ++++
Sbjct: 239 EGNVIGTFGISHDITRQKNAEQEL 262


>gi|307717858|ref|YP_003873390.1| transcriptional regulatory protein [Spirochaeta thermophila DSM
           6192]
 gi|306531583|gb|ADN01117.1| transcriptional regulatory protein [Spirochaeta thermophila DSM
           6192]
          Length = 751

 Score =  345 bits (884), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 99/425 (23%), Positives = 184/425 (43%), Gaps = 29/425 (6%)

Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPE--------DVDTRINKRKMEIEVMQLCSI 457
                 +    P          +  +G+                 ++ +++    +L  I
Sbjct: 171 EGAPYFSFLLDPVGIVAGGAVLLFYSGLGAAYLVTVIDFIAKAARSEIQLKKSEERLEGI 230

Query: 458 LEATSDGIAI---INREGII--LSTNRAVSKLFGYPVEDILRKPFTVF--LEQNTPSVMN 510
           ++    G+ +   ++  G I     +    ++FG  V+ IL+ PF     + +     + 
Sbjct: 231 VQNIP-GVILQLEMSVSGNIYYTYISDQAREIFGEKVDRILQNPFATLRFMPKEKLRAIV 289

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEE-KLLSLRIIIKKLPFSSCYS-LTMHDISEWKQEK 568
           H +  +    +   L       T+   +   + + +      + Y    + D  E    +
Sbjct: 290 HTIRNL--DRISVPLGWDVRLRTRRGHRWFRVTVSVTPSAEGTFYLNAIILDTEEIHAYQ 347

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
            +L  AK+ AE+ +  KS FLA +SHE+RTPL  IIG SE++ +           +EYA 
Sbjct: 348 ERLKEAKEEAERANRAKSAFLATMSHELRTPLNGIIGMSELLMSSGLSG----ELVEYAR 403

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I  +G  +L ++ND+LDIS++ESGK+ +   P  L   +      +      K +    
Sbjct: 404 TIQTAGENLLALINDILDISQLESGKLKVERRPCDLKAVLLHVYKTLYPQTIHKNLRFVL 463

Query: 689 SFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EVILRVRDT 744
             A+ IP ++  D   + Q+  N++ NAI FT  G ++++       E   E++ +VRDT
Sbjct: 464 EVASEIPAVVISDEARLSQVLFNLVGNAIKFTSRG-EVVLRVWMEEEEGRAELVFQVRDT 522

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G+   EL +  + F Q+      R +G+GLGL +AK +V+   G+  + S   KG+  
Sbjct: 523 GIGIPREELPRVFERFHQVDQGVTRRFQGSGLGLSIAKDLVELMGGRIDVESEEGKGSCF 582

Query: 805 EIIFP 809
            +  P
Sbjct: 583 TVRIP 587


>gi|39996203|ref|NP_952154.1| sensory box histidine kinase [Geobacter sulfurreducens PCA]
 gi|39982968|gb|AAR34427.1| sensory box histidine kinase [Geobacter sulfurreducens PCA]
          Length = 537

 Score =  345 bits (884), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 93/402 (23%), Positives = 165/402 (41%), Gaps = 25/402 (6%)

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
                   IP    ++  E           ++  + +  +  E  +L +IL    +G+ +
Sbjct: 157 GRGDYGRRIPVITRDEVGELARVMNEMASQIERNLAR--ISAEKNRLDTILRGMGEGLMV 214

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
            +  G +   N A  +LFG       R+   +             ++            +
Sbjct: 215 SDAGGTVTLVNPAFLELFGLTQSVEGRQIIEIARFPELHETFRAVVSSRSEH------VE 268

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
                  +EK +    +               HDIS+ K+ +                + 
Sbjct: 269 EMTLPLGDEKQVLTHWVPLMEEDELRGVVAVFHDISDLKRLEVV--------------RR 314

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
           DF+A VSHE+RTP+T I G++E +           R   +   I      + D++ DLL 
Sbjct: 315 DFVANVSHELRTPVTVIKGYAEALAGG-LVEEDPERAGRFLEIICSHSERLADLIRDLLT 373

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706
           +S++ESG + L    + LD AVS A  L++  A  K I+I  S     P +LAD   ++Q
Sbjct: 374 LSQLESGGLQLELTQIHLDRAVSHAAGLLEQKAARKEIVIDISALAGAPPVLADPGRLEQ 433

Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
           + +N++ NA+ +TP GG I +S    ++  V + V DTG+G+   +L +  + F ++  +
Sbjct: 434 VLINLMDNALKYTPPGGTITLS-ADEADGMVRVSVHDTGIGIPPKDLPRIFERFYRVDAA 492

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           +     GTGLGL + K ++  + G   + S   KGT      
Sbjct: 493 RSRDEGGTGLGLSIVKHIIQLHGGSITVESEHGKGTTFRFTL 534


>gi|258627627|ref|ZP_05722403.1| multi-sensor hybrid histidine kinase [Vibrio mimicus VM603]
 gi|258580070|gb|EEW05043.1| multi-sensor hybrid histidine kinase [Vibrio mimicus VM603]
          Length = 1586

 Score =  344 bits (883), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 105/384 (27%), Positives = 173/384 (45%), Gaps = 20/384 (5%)

Query: 448  EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
            E EV +  ++LE++ +   I++  GII   N    K+FGY  +++   P       +  S
Sbjct: 706  EKEVFRFKALLESSPEATLIVDTNGIIKMVNEEAEKVFGYGRDELEGYPMHRLFPHDLES 765

Query: 508  VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS--LTMHDISEWK 565
                +       +LR   ++I +    +E    + I    +         +++ +I++  
Sbjct: 766  ARAKHAQW---HELRPGNQRIEIAVRSDETEFPVEISSSSVQMDDGLLISVSIRNITDRL 822

Query: 566  QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
              +  L  A   AE+ +  KS FLA  SHEIRTPL AI+G + ++ ++            
Sbjct: 823  AFEQTLKQALHDAEQATQAKSVFLANTSHEIRTPLNAILGLTHLLSDESL----TESQHR 878

Query: 626  YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
              + I  SG  +L IVND+LD+SKIE+ +M L   P+ L E + E  S+    A  K + 
Sbjct: 879  LVDKIGISGKSLLGIVNDVLDLSKIEANEMILEALPLDLREFLEEVASVFSTQAEAKNLD 938

Query: 686  IRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH--------TSNEE 736
             +     ++P  ++AD   ++QI  N+LSNA+ FT  G  I +                 
Sbjct: 939  FKLEIGVDLPHWVIADSMRLRQILTNLLSNALKFTSVG-HIALRAEIIDKFIWKGAEKNI 997

Query: 737  VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
            V   + DTG+G++    ++  KPF Q   S   R  GTGLGL +   ++    GK  + S
Sbjct: 998  VRFSITDTGIGISEEAQKRLFKPFSQADTSTSRRFGGTGLGLSIVHKLLGLMEGKIGVES 1057

Query: 797  TPAKGTLIEIIFPLYDTSHPHDCI 820
               +G+      PL   S   D I
Sbjct: 1058 REGQGSTFWTDMPLQTLSD-EDII 1080



 Score = 40.0 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 40/141 (28%), Gaps = 2/141 (1%)

Query: 169 YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228
               REF G  GFG +   RV  D  A      ++    +   +  +  + +++ I    
Sbjct: 93  RDIEREFPGALGFGFIR--RVPVDKEADFIVAARRDDFPNFTIRTLTPHDGDRFIIQYIY 150

Query: 229 SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288
              P+L+                     E+ P LT+  + +          L        
Sbjct: 151 PEKPNLQAIGLDIGSETNRRKAALASVREQQPYLTAPITLVQADNKPRRGVLILLPVYPS 210

Query: 289 FGTLQNNSKESFEYLSHRNHP 309
              L    +    +L     P
Sbjct: 211 RMELNTPDEREKYFLGWAYAP 231


>gi|257094180|ref|YP_003167821.1| multi-sensor hybrid histidine kinase [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257046704|gb|ACV35892.1| multi-sensor hybrid histidine kinase [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 1138

 Score =  344 bits (883), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 112/660 (16%), Positives = 243/660 (36%), Gaps = 51/660 (7%)

Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV------SS 242
                +   +R  +  + + E       +     +I +       +   ++         
Sbjct: 317 RIAAQQRELERERRLVASVFEASAASILITTASGEILAANPAFEQITGYSRAEVIGINPR 376

Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302
           + +   +     +        S  +    +      +   Y +      + ++  +   +
Sbjct: 377 ILKSGLNPPQTYEDLWE--TISHGAVWRGELQNRKKSGELYWEALAISPVVDDHGKITHF 434

Query: 303 LSHRNHPSLSAYFDEGEN----LTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSV 357
           +      +     ++       L   T+D       V   +G     N +FL + +  +V
Sbjct: 435 IGVAPDITEGKLAEQALRASFSLLDATLDSTTDGILVVDRNGKAAKWNRAFLDMWQAPAV 494

Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
                A      + A  L    +    +   +      A+  L  I+            P
Sbjct: 495 ---AAAADNEEAVVAQALGQLASSGRGLTEVTGPHPNPAAGSLDQIELADGRVFERYSQP 551

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILS 476
                Q    + +     +    +  + ++     Q  ++   +   I + +RE G I+ 
Sbjct: 552 QRIGEQ---IVGRVWCFHDVTRQKRTEAELRASEQQFRALFADSPVSILVHDRESGEIID 608

Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
            N      +G      L+          + +    ++ +  +   +Q          ++ 
Sbjct: 609 ANPTAWTAYGLSSLQELQASDFWLAPPYSFAEALSWIRKAAAHGKQQ---FEWRNQRRDG 665

Query: 537 KLLSLRIIIKK--LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAE--------------- 579
           +L    + + +  +        T  DIS+ K+ + +L+   +  E               
Sbjct: 666 ELFWEHVTLSRVTIGGVERILATAIDISDRKRAEQQLAEYGEHLEVLVDERTTALAQART 725

Query: 580 ------KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
                   ++ K++FL+R+SHE+RTPL AI+GF +++      PL   +  +    I R+
Sbjct: 726 AIADAQAANAAKTEFLSRMSHELRTPLNAILGFGQLLALPGDAPLS-AQQADNVQEILRA 784

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693
           G  +L+ VN++LD+++IESG++ L  E V L   V+E ++LV+  A  + + I  +  ++
Sbjct: 785 GRHLLEQVNEVLDLARIESGRIELSLEAVPLSSVVAECVALVRPLAEARGVSIDAAIDDS 844

Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753
              + AD   ++Q+ LN+LSNAI +    G + +       E +   V D+G G+ +  L
Sbjct: 845 --MLQADPTRLRQVILNLLSNAIKYNREHGTVRLD-NTREGERLRFAVTDSGRGIASEHL 901

Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
            +  +PF ++ +S     EG+G+GL L+K +V+   G   + S    G+      PL   
Sbjct: 902 PRLFQPFERLESSY-EGIEGSGVGLALSKRLVEMMAGSIRVDSRIGVGSTFSFDLPLARV 960


>gi|114777667|ref|ZP_01452627.1| multi-sensor hybrid histidine kinase [Mariprofundus ferrooxydans
            PV-1]
 gi|114551883|gb|EAU54417.1| multi-sensor hybrid histidine kinase [Mariprofundus ferrooxydans
            PV-1]
          Length = 1427

 Score =  344 bits (883), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 113/646 (17%), Positives = 233/646 (36%), Gaps = 43/646 (6%)

Query: 185  HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244
               +   +  +           +        SV      +F  Q+        + +    
Sbjct: 379  RRVQETQNRLSAVVEHTVDSVVVINHLGIIESVNPAVEKVFGYQASELLGNNVSMLMPEP 438

Query: 245  EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL- 303
                H D + +             +  + +    + + +  +      + +S   F    
Sbjct: 439  HRGVHNDYISRFMDSGDARVIG--IGREVEAIRSDGSLFPAELTVSRFELDSGTHFAGTL 496

Query: 304  -SHRNHPSLSAYFDEGENLTPETVDKCPIP----FFV-YSHGNLFYANPSFLLLTKYKSV 357
                      A  +        T           F+V      +   N       KY   
Sbjct: 497  RDLTQRKKAEAELEAERKSNEITKRALERGNIGEFWVNVHTAAILRVNDWACDYLKYSRE 556

Query: 358  DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
            + +      +  +          + P  +        A     H  +    + + + FI 
Sbjct: 557  ELL------NMTIPEIAPEFPMELFPQTMEEIRGQGWARLESFHRAR--DGSVIPLEFIV 608

Query: 418  FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINREGIILS 476
                 +  ++        +  + +  + ++     ++ S++ A +D G+ +   +  I  
Sbjct: 609  DYVKAKDAKDDIIIAFSLDISERKQIEDEL-----RMMSLVAAETDNGVVVTGLDQKIKW 663

Query: 477  TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL-DLRQTLEKITLGSTKE 535
             N   + + GY  ++++ +    FL    P      ++ + +    ++ +        K 
Sbjct: 664  VNPGFTDITGYDFDEVIGRKPGDFLHG--PKTEQDAVSCLGTAIRKQERVATDITNYGKN 721

Query: 536  EKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
             +   L I I  +   S     +     +++E ++   ++  AK+ AE  +  KS FLA 
Sbjct: 722  GEPYILHIEIMPIRDESGEVVEFIALESNVTEQRRADKEIKEAKEAAELANRAKSSFLAA 781

Query: 592  VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
            +SHEIRTPL  ++G  +++++ R          +       S   ++ I++D+LD SKIE
Sbjct: 782  MSHEIRTPLNGVVGTIDLLEHTRLESN----QRDMVRTARDSSLTLMGIIDDVLDFSKIE 837

Query: 652  SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
            +GK+ L   PVSL   V   +  +Q  A +  I +       IP ++ DL  ++QI LN+
Sbjct: 838  AGKLELDDAPVSLQRVVEGCVESMQPLAAKNNIELLVFCEPAIPEVMGDLVRLRQILLNL 897

Query: 712  LSNAIHFT-----PSGGQIIISTTHT----SNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
              NAI F+        G++ +S         + ++ L V+D G+GM+    EK  +PF Q
Sbjct: 898  TGNAIKFSAGLKSGRQGRVEVSAALESVEEQDVKIRLSVKDNGIGMSADAQEKLFRPFVQ 957

Query: 763  IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
              +S   R  GTGLGL +++ +V+   G   + S   +G    +  
Sbjct: 958  AESSTTRRFGGTGLGLAISRRLVEMMGGHIEVESRLDQGACFSVAL 1003



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 38/373 (10%), Positives = 102/373 (27%), Gaps = 25/373 (6%)

Query: 93  GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWY----GKT 147
           G ++ ++  + K  G  A +++G  +  +    H   + ++I   +   +        + 
Sbjct: 406 GIIESVNPAVEKVFGYQASELLGNNVSMLMPEPHRGVHNDYISRFMDSGDARVIGIGREV 465

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR----LDKK 203
                +G+     + ++    +  +   SG    G +          A  +      +  
Sbjct: 466 EAIRSDGSLFPAELTVS---RFELD---SGTHFAGTLRDLTQRKKAEAELEAERKSNEIT 519

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEKYPL 261
              L     G   V      I              + ++ ++T      +  ++     +
Sbjct: 520 KRALERGNIGEFWVNVHTAAILRVNDWACDYLKYSREELLNMTIPEIAPEFPMELFPQTM 579

Query: 262 LTSEESSLPEQEDFHTI-NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
                      E FH   + +    +     ++    +    ++     S     ++   
Sbjct: 580 EEIRGQGWARLESFHRARDGSVIPLEFIVDYVKAKDAKDDIIIAFSLDISERKQIEDELR 639

Query: 321 LTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
           +      +      V      + + NP F  +T Y   + I    G    L  PK   + 
Sbjct: 640 MMSLVAAETDNGVVVTGLDQKIKWVNPGFTDITGYDFDEVIGRKPG--DFLHGPKTEQDA 697

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
                   R        +  +     N E    +        ++  E +    +E    +
Sbjct: 698 VSCLGTAIRKQER---VATDITNYGKNGEPY-ILHIEIMPIRDESGEVVEFIALESNVTE 753

Query: 440 TRINKRKMEIEVM 452
            R   ++++    
Sbjct: 754 QRRADKEIKEAKE 766



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 40/448 (8%), Positives = 106/448 (23%), Gaps = 64/448 (14%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNTWYGK 146
                  +K ++       G    ++IG +  D       + +    +G  +++Q      
Sbjct: 655  TGLDQKIKWVNPGFTDITGYDFDEVIGRKPGDFLHGPKTEQDAVSCLGTAIRKQERVATD 714

Query: 147  TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
             T +   G    + I++  +PI   + E   F    +              K   +    
Sbjct: 715  ITNYGKNGEPYILHIEI--MPIRDESGEVVEF--IALESNVTEQRRADKEIKEAKEAAEL 770

Query: 207  LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
             +  K    +    +          P   +   +  L       +           +   
Sbjct: 771  ANRAKSSFLAAMSHEIR-------TPLNGVVGTIDLLEHTRLESNQRDMVRTARDSSLTL 823

Query: 267  SSLPEQ-EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH----------PSLSAYF 315
              + +   DF  I   +        +LQ   +   E +                      
Sbjct: 824  MGIIDDVLDFSKIEAGKLELDDAPVSLQRVVEGCVESMQPLAAKNNIELLVFCEPAIPEV 883

Query: 316  DEGENLTPETVDKC-------PIPFFVYSHGNLFYANPSFLLL--------TKYKSVDDI 360
                    + +                   G +   + +   +           K     
Sbjct: 884  MGDLVRLRQILLNLTGNAIKFSAGLKSGRQGRVE-VSAALESVEEQDVKIRLSVKDNGIG 942

Query: 361  EIAGGLSTLLDAPKLSDNNAIKPV-----------MLYRSDRTCIAASARL-----HTIQ 404
              A     L      ++++  +              L       I   +RL      ++ 
Sbjct: 943  MSADAQEKLFRPFVQAESSTTRRFGGTGLGLAISRRLVEMMGGHIEVESRLDQGACFSVA 1002

Query: 405  WNRENSLAMTFIPFEKANQF--------PENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
               + +L     P               PE +    +        +        + +  +
Sbjct: 1003 LTMKVALDQQVTPDSGLAGLQVLLVKGHPEAVRIIDVYLRFAGVIVTLATPADALERFKT 1062

Query: 457  ILEATSDGIAIINREGIILSTNRAVSKL 484
            ++    + + +I+ +G    TN+  +++
Sbjct: 1063 LVNNDGEVLLVIDSQGEEERTNQMRAEM 1090



 Score = 38.1 bits (87), Expect = 6.3,   Method: Composition-based stats.
 Identities = 17/242 (7%), Positives = 70/242 (28%), Gaps = 11/242 (4%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEG 154
           +  +++     +     +++ M + +++    ++      + ++ Q     ++     +G
Sbjct: 540 ILRVNDWACDYLKYSREELLNMTIPEIAPEFPMELFPQTMEEIRGQGWARLESFHRARDG 599

Query: 155 TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214
           + + +   +  +       +        I+  +   ++ + +   L        E   G 
Sbjct: 600 SVIPLEFIVDYVKAKDAKDDI-------IIAFSLDISERKQIEDELRMMSLVAAETDNGV 652

Query: 215 SSVE-KEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE---ESSLP 270
                 +K    +           ++V              + +    L +    +  + 
Sbjct: 653 VVTGLDQKIKWVNPGFTDITGYDFDEVIGRKPGDFLHGPKTEQDAVSCLGTAIRKQERVA 712

Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330
                +  N   Y        +++ S E  E+++  ++ +     D+      E  +   
Sbjct: 713 TDITNYGKNGEPYILHIEIMPIRDESGEVVEFIALESNVTEQRRADKEIKEAKEAAELAN 772

Query: 331 IP 332
             
Sbjct: 773 RA 774


>gi|23099619|ref|NP_693085.1| two-component sensor histidine kinase [Oceanobacillus iheyensis
           HTE831]
 gi|22777849|dbj|BAC14120.1| two-component sensor histidine kinase involved in phosphate
           regulation [Oceanobacillus iheyensis HTE831]
          Length = 453

 Score =  344 bits (883), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 82/366 (22%), Positives = 166/366 (45%), Gaps = 29/366 (7%)

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
           +++  QL +I++    G+ +I+ +G +   NR   ++FG    +     +    E     
Sbjct: 112 QMQSEQLTTIVDNMQSGLVLIDEKGYVHVVNRKFLEMFGEEESNYRGHLYYDVFENENVH 171

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISE 563
                         +  + +  L        + + ++   +           L ++DI+E
Sbjct: 172 ETVQKTFLYEETVKKSFVHREGLNK------IYVEVVGAPIFNERNMLKGAVLVLYDITE 225

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            K+ +                + DF+A VSHE+RTP+T+I GF+E + +     + +P  
Sbjct: 226 LKKLE--------------KMRKDFVANVSHELRTPITSIRGFAETLLDNN---ITDPAT 268

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            E+   I +  + +  ++ DLL +S++E     L  +   + + V E +  +   A  K 
Sbjct: 269 KEFMEIIYKESHRLQLLIEDLLALSRLEREDFRLLIDNYDVRQMVEEILPQLHQKAENKN 328

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
           +       + +  + AD   +KQ+ +N++ N+IH+TPSGG I ++ +    + +  +V+D
Sbjct: 329 LTFDLEVPDQL-TMRADKDRMKQVLINLIDNSIHYTPSGGDICLAIS-EETDVIHFQVKD 386

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           +G+GM      +  + F ++  ++     GTGLGL + K +V+ + GK  + ST  +GT 
Sbjct: 387 SGIGMDEKSQTRVFERFYRVDKARSRNTGGTGLGLAIVKHIVEVHKGKIDVESTLNQGTT 446

Query: 804 IEIIFP 809
           I I  P
Sbjct: 447 IHIYIP 452



 Score = 39.6 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 28/244 (11%), Positives = 68/244 (27%), Gaps = 9/244 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  GY+  ++ +  +  G       G    DV +  ++  +  +      + T   K +
Sbjct: 132 IDEKGYVHVVNRKFLEMFGEEESNYRGHLYYDVFENENV--HETVQKTFLYEETV--KKS 187

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               EG    + +++   PI++      G     +++             R D   +  H
Sbjct: 188 FVHREG-LNKIYVEVVGAPIFNERNMLKGA--VLVLYDITELKKLEK--MRKDFVANVSH 242

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           E++   +S+      +       P  +   ++     +              L   +   
Sbjct: 243 ELRTPITSIRGFAETLLDNNITDPATKEFMEIIYKESHRLQLLIEDLLALSRLEREDFRL 302

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
           L +  D   +      +       +N + +                     NL   ++  
Sbjct: 303 LIDNYDVRQMVEEILPQLHQKAENKNLTFDLEVPDQLTMRADKDRMKQVLINLIDNSIHY 362

Query: 329 CPIP 332
            P  
Sbjct: 363 TPSG 366


>gi|167644019|ref|YP_001681682.1| PAS/PAC sensor hybrid histidine kinase [Caulobacter sp. K31]
 gi|167346449|gb|ABZ69184.1| PAS/PAC sensor hybrid histidine kinase [Caulobacter sp. K31]
          Length = 901

 Score =  344 bits (883), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 103/743 (13%), Positives = 223/743 (30%), Gaps = 56/743 (7%)

Query: 93  GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR-QNTWYGKTTLWP 151
           G    ++    +  G     ++G                    L++     +     +  
Sbjct: 38  GRFATVNPAWTRVTGWSRQDLVGQPALRFVHPESRQDFIETASLIRAAGEAFNRLKVVCK 97

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
             G      + L +      N E  G      +     D   RA      +    L    
Sbjct: 98  NGG-----WVWLESQSRLGPNGEMVGA-----LRDVTADMARRAELAVARQTRELLASSA 147

Query: 212 KGHSSVEKEKYDIFSQQS--------PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
                  +                   P  +   ++     +    +      +      
Sbjct: 148 GIGVWSYEPHGQHIEWSRDILTVTGLEPEDIAQPDQFYDRLDPAEREGLRATFDAAVRTG 207

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
              +                   +                +  +          GE    
Sbjct: 208 EGATIEHRLRGAGDQWFTYRATFRTEPRGDGLFALKGISQNVTDVARTRDAAVWGERQAR 267

Query: 324 ETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIA-----GGLSTLLDAPKLSD 377
             V++ P    +Y     L   +P FL + +      I  +      G            
Sbjct: 268 RLVEEAPFAVALYDRDLRLRVVSPRFLEIFQATEEGVIGRSLHDLTSGTRRRFVNAV--- 324

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
             A+    + R +     A  R HT++W                +   E         + 
Sbjct: 325 ERALTGETVVRREDQLRDALGRSHTLRWEARPW----------RDADGEIGGVITYMDDV 374

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
                 +R+  +   +L   L A   G+  I+        +    ++ G  +     +  
Sbjct: 375 TALSDARREARVNARRLRVALGAAQAGVYEIDHVDKAFWGSPEFHRILGRRISYEDVRSA 434

Query: 498 TVFLEQNTPSV----MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553
              +            +            ++ +   +    E + + +   +++      
Sbjct: 435 VWPMIHPDDVASVYDASDAWLGKREDGGGRSFDVRVVTGRGETRWIRIFHEVRQDAGGRI 494

Query: 554 Y--SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
                 + DI + K+ +  L  A++ A+  +  K+ FLA +SHEIRTP+  ++G   ++K
Sbjct: 495 RKAFGLILDIDDKKRAELALVEAERAAQAANEAKAQFLANMSHEIRTPMNGVLGVMHLLK 554

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
            ++     +             G ++  +++D++D S+IE+G++++  E V   E     
Sbjct: 555 REKLPGDAD----HLLGEALACGRMLSTLLDDVIDFSRIEAGRLDVTREAVDPSELAMSV 610

Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
             L++  A  K + +R   A ++  IL D   ++Q   N++ NA+ FT +G  + +    
Sbjct: 611 ARLLRAQAEHKGLELRVE-APDLGLILTDPSRLRQALFNLVGNAVKFTLAGS-VTLKVRL 668

Query: 732 TSNE------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
                     +++  V DTGVG+      +  + F Q   S   R  G+GLGL + + + 
Sbjct: 669 LDGGGPQDVPKIVFEVIDTGVGIAAEAQARLFERFQQADASTTRRFGGSGLGLAITRRLA 728

Query: 786 DANMGKFYIFSTPAKGTLIEIIF 808
           +   G+    S    G+   +  
Sbjct: 729 EMMGGEVGFTSREDAGSTFLLTI 751



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/263 (14%), Positives = 75/263 (28%), Gaps = 19/263 (7%)

Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
            D     F V S G     NP++  +T +   D +        L      S  + I+   
Sbjct: 25  FDHSHDLFAVVSRGRFATVNPAWTRVTGWSRQDLVGQP----ALRFVHPESRQDFIETAS 80

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
           L R+         RL  +  N      +      +     E +        D+  R    
Sbjct: 81  LIRAAGEAF---NRLKVVCKNGG---WVWLESQSRLGPNGEMVGALRDVTADMARRAELA 134

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR-KPFTVFLEQN 504
                   L S   +   G+      G  +  +R +  + G   EDI +   F   L+  
Sbjct: 135 VARQTRELLAS---SAGIGVWSYEPHGQHIEWSRDILTVTGLEPEDIAQPDQFYDRLDPA 191

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL---TMHDI 561
               +       +      T+E    G    ++  + R   +  P             ++
Sbjct: 192 EREGLRATFDAAVRTGEGATIEHRLRG--AGDQWFTYRATFRTEPRGDGLFALKGISQNV 249

Query: 562 SEWKQEKNKLSHAKKIAEKESSH 584
           ++  + ++     ++ A +    
Sbjct: 250 TDVARTRDAAVWGERQARRLVEE 272



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/376 (9%), Positives = 93/376 (24%), Gaps = 16/376 (4%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMI-GMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144
            W+ + HG   E S ++    G     +    +  D  D    +      D   R     
Sbjct: 151 VWSYEPHGQHIEWSRDILTVTGLEPEDIAQPDQFYDRLDPAEREGLRATFDAAVRTGEGA 210

Query: 145 GKTTLWPIEGTNLYVPI-DLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                    G   +         P         G      V       D    G+R  ++
Sbjct: 211 TIEHRLRGAGDQWFTYRATFRTEPRGDGLFALKGISQ--NVTDVARTRDAAVWGERQARR 268

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK-TEKYPLL 262
                            +  + S +        +  V   + +        +        
Sbjct: 269 LVEEAPFAVALYD-RDLRLRVVSPRFLEIFQATEEGVIGRSLHDLTSGTRRRFVNAVERA 327

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG---- 318
            + E+ +  ++         +T +      ++   E    +++ +  +  +         
Sbjct: 328 LTGETVVRREDQLRDALGRSHTLRWEARPWRDADGEIGGVITYMDDVTALSDARREARVN 387

Query: 319 ENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYK-SVDDIEIAGGLSTLLDAPKLS 376
                  +       + +      F+ +P F  +   + S +D+  A     +      S
Sbjct: 388 ARRLRVALGAAQAGVYEIDHVDKAFWGSPEFHRILGRRISYEDVRSAVW-PMIHPDDVAS 446

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
             +A    +  R D    +   R+ T +     +  +      + +         G+  +
Sbjct: 447 VYDASDAWLGKREDGGGRSFDVRVVTGR---GETRWIRIFHEVRQDAGGRIRKAFGLILD 503

Query: 437 DVDTRINKRKMEIEVM 452
             D +  +  +     
Sbjct: 504 IDDKKRAELALVEAER 519


>gi|218777967|ref|YP_002429285.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
            alkenivorans AK-01]
 gi|218759351|gb|ACL01817.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
            alkenivorans AK-01]
          Length = 1147

 Score =  344 bits (883), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 108/750 (14%), Positives = 238/750 (31%), Gaps = 53/750 (7%)

Query: 92   HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151
            +G ++ ++ +     G     M+   + D      +           R        +   
Sbjct: 290  NGVIRFVNAKAGDFTGVDPQGMLARDMTDFIHPEDLALVTERHAQRLRGEAPPSSYSFRL 349

Query: 152  IEGTNLYVPIDLAALPIYSRNREFSGFRG-FGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
            +  +     ++L+  PI     E+ G       +                +K+F    + 
Sbjct: 350  LHESGHVRWVELSVTPI-----EWEGKPATLNFLRDISDRKKAENEIIEREKRFRATLDN 404

Query: 211  KKGHSSVEKEKYDIFSQQSPPP----HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
                  +    +                +      S+ + Y   +               
Sbjct: 405  MLEGCQIIGFDWSYIYLNDAAAKHGRMNKQDMTGKSMLDLYPGIEQTEIFALMQDGMINR 464

Query: 267  SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
             S   +  F+  N +    +     +          +           F E E+      
Sbjct: 465  VSHQVENVFYYGNGSNRWFELSIQPVPE--GIFVLSIDVTERKWAEHSFKESESRFRTLF 522

Query: 327  DKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
            ++ PI    V  +G    +N +   L  Y   +         + L+     +  A + ++
Sbjct: 523  EQAPIGIIMVAPNGFPIRSNKALRELVGYTEKEI-----CARSFLEWTHPDERKASQRLI 577

Query: 386  LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
               +             +  N +  +          N          +  +  ++++ ++
Sbjct: 578  KSIAAGEETLKIMEKRYLHKNGD-MVWGRTAVTAVRNSAGAVEYFIAMVEDIRESKMAEQ 636

Query: 446  KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED-ILRKPFTVFLEQN 504
             ++    +  S+   + D +     +G +   N+A   LFG   ++ I+ KP    +   
Sbjct: 637  VLQDSENRYRSLFMHSPDAVFTA-LDGKVFLVNQACLNLFGAKKDEDIVGKPILDLVAPE 695

Query: 505  TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI--IIKKLPFSSCYSLTMHDIS 562
              S+       + +      L         + K + + +      +  +    + + DIS
Sbjct: 696  FRSLAAKRRDILDAEGRPLPL-VEMQMLRMDGKPVDVEVLTSAFSMGAAMATHVILRDIS 754

Query: 563  EWKQEKNKLSHAKKIAEKESSHKS--DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
              K  + +    ++        +S       V+H++   L+ IIGF E++ +       +
Sbjct: 755  ARKNMEKEKEQLQEQLSMSQKLESIGRLAGGVAHDLNNLLSPIIGFGEILSDDIG---PD 811

Query: 621  PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
                E    I  +G    ++V  LL  S+    K  L F+P+ + + +    +L++    
Sbjct: 812  DPKREAVEEILGAGLRARNLVRQLLAFSR----KQTLEFKPLDISKTLGAFKNLLRRTIP 867

Query: 681  EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS------- 733
            E  I IR   +  +  ++AD   ++Q+ +N+  NA    P+GG + + T           
Sbjct: 868  E-DIEIRVISSQKVLPVMADAGQIEQVIMNLAVNAADAMPNGGVLTLETGMADLDADYAK 926

Query: 734  -------NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
                        L + DTG GM     E+A +PF            GTGLGL     +V 
Sbjct: 927  LHSEVQPGRYAALVISDTGQGMDQAARERAFEPFFSTKGKH-----GTGLGLATVYGIVK 981

Query: 787  ANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
             + G  +++S   +G   +I  P+ + S P
Sbjct: 982  QHGGSIWLYSEEGQGATFKIYLPVAEESPP 1011



 Score =  127 bits (318), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 57/543 (10%), Positives = 135/543 (24%), Gaps = 25/543 (4%)

Query: 44  PCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELP 103
           P ++  EQ   + Q   S          +     P      F       G +  +++   
Sbjct: 5   PSYEELEQQVLSLQRDNSQLREEERRCRSLMDEAPGLICT-FL----PDGEIVYVNQPYC 59

Query: 104 KTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN-TWYGKTTLWPIEGTNLYVPID 162
                   ++ G     +      D        L R+N T   +  +   +G+       
Sbjct: 60  AYFKKDFDELAGTSFLLLLPEPDRDAVLKNIHALTRENPTMPHEHQVVAADGS--VRWQR 117

Query: 163 LAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKY 222
                 ++ N E   ++  G                +  KKF  + E       V  E  
Sbjct: 118 WTNRAFFNSNGEAEMYQAVG--EDVTERKLAAQAILKERKKFEDVLEKFPYGVCVVDENR 175

Query: 223 DIFSQQSPPPHLRMKNKVSSLTEYYAHKD-DVLKTEKYPLLTSEESSLPEQEDFHTINLN 281
            I              +   L  +   KD   L          +E     +      + +
Sbjct: 176 RIEFVNKK--IREEFGEPGDLLCHQYFKDMPGLCPACRTGAAFQEEFCKMEWRSQGKDRH 233

Query: 282 QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNL 341
                        +      +          +   E E      V+      ++  +G +
Sbjct: 234 YEVYDIPLKNENGSKSRVQIFNDITEQKKAESALQESEAKYRALVENAGEAIYIVQNGVI 293

Query: 342 FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401
            + N      T           G L+  +      ++ A+      +  R     S+   
Sbjct: 294 RFVNAKAGDFTGVDPQ------GMLARDMTDFIHPEDLALVTERHAQRLRGEAPPSSYSF 347

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
            +     +   +          +           +  D +  + ++     +  + L+  
Sbjct: 348 RLLHESGHVRWVELSVTPIE--WEGKPATLNFLRDISDRKKAENEIIEREKRFRATLDNM 405

Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
            +G  II  +   +  N A +K      +D+  K           + +   + + +   +
Sbjct: 406 LEGCQIIGFDWSYIYLNDAAAKHGRMNKQDMTGKSMLDLYPGIEQTEIFALMQDGMINRV 465

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE 581
              +E +        +   L I            +   D++E K  ++    ++      
Sbjct: 466 SHQVENVFYYGNGSNRWFELSIQPVP----EGIFVLSIDVTERKWAEHSFKESESRFRTL 521

Query: 582 SSH 584
              
Sbjct: 522 FEQ 524



 Score = 99.3 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/285 (13%), Positives = 89/285 (31%), Gaps = 15/285 (5%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
              ++   E E      +D+ P     +   G + Y N  +    K     D +   G S
Sbjct: 18  QRDNSQLREEERRCRSLMDEAPGLICTFLPDGEIVYVNQPYCAYFKK----DFDELAGTS 73

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
            LL  P+   +  +K +     +   +      H +     +     +      N   E 
Sbjct: 74  FLLLLPEPDRDAVLKNIHALTRENPTMP---HEHQVVAADGSVRWQRWTNRAFFNSNGEA 130

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
                +  +  + ++  + +  E  +   +LE    G+ +++    I   N+ + + FG 
Sbjct: 131 EMYQAVGEDVTERKLAAQAILKERKKFEDVLEKFPYGVCVVDENRRIEFVNKKIREEFGE 190

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
           P + +  + F                 E       +  +       K+       I +K 
Sbjct: 191 PGDLLCHQYFKDMPGLCPACRTGAAFQE-------EFCKMEWRSQGKDRHYEVYDIPLKN 243

Query: 548 LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
              S       +DI+E K+ ++ L  ++        +  + +  V
Sbjct: 244 ENGSKSRVQIFNDITEQKKAESALQESEAKYRALVENAGEAIYIV 288



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/292 (9%), Positives = 83/292 (28%), Gaps = 15/292 (5%)

Query: 56  DQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIG 115
           D  +   +  ++ +SE+ F        +     +  +G+    ++ L + +G    ++  
Sbjct: 500 DVTERKWAEHSFKESESRFRTLFEQAPIGII-MVAPNGFPIRSNKALRELVGYTEKEICA 558

Query: 116 MRLCDVSDILHIDPNNHIGDLLKRQNTW--YGKTTLWPIEGTNLYVPIDLAALPIYSRNR 173
               + +       +  +   +          +       G    V    A   + +   
Sbjct: 559 RSFLEWTHPDERKASQRLIKSIAAGEETLKIMEKRYLHKNGD--MVWGRTAVTAVRNSAG 616

Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP--- 230
               F    +V   R       + +  + ++  L            +       Q+    
Sbjct: 617 AVEYF--IAMVEDIRESKMAEQVLQDSENRYRSLFMHSPDAVFTALDGKVFLVNQACLNL 674

Query: 231 PPHLRMKNKVS-SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYF 289
               + ++ V   + +  A +   L  ++  +L +E   LP  E    + ++        
Sbjct: 675 FGAKKDEDIVGKPILDLVAPEFRSLAAKRRDILDAEGRPLPLVE-MQMLRMDGKPVDVEV 733

Query: 290 GTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNL 341
            T   +   +          S     ++ +    +  ++  +   + S G L
Sbjct: 734 LTSAFSMGAAMATHVILRDISARKNMEKEK---EQLQEQLSMSQKLESIGRL 782


>gi|167630091|ref|YP_001680590.1| signal transduction histidine kinase [Heliobacterium modesticaldum
           Ice1]
 gi|167592831|gb|ABZ84579.1| signal transduction histidine kinase [Heliobacterium modesticaldum
           Ice1]
          Length = 567

 Score =  344 bits (883), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 96/394 (24%), Positives = 181/394 (45%), Gaps = 31/394 (7%)

Query: 443 NKRKMEIEVMQLCS-ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
              ++   + +L +  L     GIA+++ E  IL  N  + +L G   +++  K      
Sbjct: 21  AAEQINENIAELQAYALANADMGIAVLDEEYQILVWNAWLERLTGKKADEVRGKKLVELF 80

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLE---KITLGSTKEEKLLS-----LRIIIKKLPFSSC 553
            +   SV              +              +  LL      +++   ++     
Sbjct: 81  PRFNHSVFRPIFERAFFDGQNRFFSGAFHRYFFPPADGSLLPYIRQNMQVQPARIGDRQY 140

Query: 554 YSLTMHDIS--------------EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
             + + DI+              E K  K +L  ++++A   +  KS+FLA +SHEIRTP
Sbjct: 141 VLIQITDITRQELRVRQLKGLIRELKLAKEELKVSREMAVVANRAKSEFLANMSHEIRTP 200

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           + AI+GF ++          N    +Y   +  +   ++ ++ D+LDISKIESG++ +  
Sbjct: 201 MNAILGFVDLTLATEL----NAEQSKYLGMVRSAAQSLMRLLEDVLDISKIESGQLVVEQ 256

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHF 718
           +P SL   +  A+ L+ + A++K + +R      +P +L  D   + Q+ +N+LSNA+ F
Sbjct: 257 QPFSLASVLRSAVDLLSVKASDKALQLRYQIPAGVPEVLVGDANRLTQVLVNLLSNAVKF 316

Query: 719 TPSGGQII-ISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T +G  ++ +      + ++ LR  VRDTG+G+    LE   + F Q+ +S   R  G+G
Sbjct: 317 TDAGEVVLGLDILEQDHRQISLRFYVRDTGIGIAPDRLEAVFEKFYQVDSSSTRRFGGSG 376

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           LGL + + +V+   G+ ++ S   KG+   +  P
Sbjct: 377 LGLAIVRQLVENMGGRVWVESELGKGSTFYVTLP 410



 Score = 43.5 bits (101), Expect = 0.17,   Method: Composition-based stats.
 Identities = 57/502 (11%), Positives = 141/502 (28%), Gaps = 37/502 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI--GDLLKRQNTWYGK 146
           +D    +   +  L +  G  A ++ G +L ++    +      I        QN ++  
Sbjct: 47  LDEEYQILVWNAWLERLTGKKADEVRGKKLVELFPRFNHSVFRPIFERAFFDGQNRFFSG 106

Query: 147 TTLW----PIEGTNL-YVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
                   P +G+ L Y+  ++   P    +R++   +   I          + L + L 
Sbjct: 107 AFHRYFFPPADGSLLPYIRQNMQVQPARIGDRQYVLIQITDITRQELRVRQLKGLIRELK 166

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
                L   ++      + K +  +  S      M   +  +    A + +  +++   +
Sbjct: 167 LAKEELKVSREMAVVANRAKSEFLANMSHEIRTPMNAILGFVDLTLATELNAEQSKYLGM 226

Query: 262 LTSEE----SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
           + S        L +  D   I   Q   +Q   +L +  + + + LS +          +
Sbjct: 227 VRSAAQSLMRLLEDVLDISKIESGQLVVEQQPFSLASVLRSAVDLLSVKASDKALQLRYQ 286

Query: 318 GENLTPE------------TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIA-- 363
                PE             V+           G +           +  S+        
Sbjct: 287 IPAGVPEVLVGDANRLTQVLVNLLSNAVKFTDAGEVVLGLDILEQDHRQISLRFYVRDTG 346

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
            G++             +      R   + +  +     ++         + +       
Sbjct: 347 IGIAPDRLEAVFEKFYQVDSSSTRRFGGSGLGLAIVRQLVENMGGRVWVESELGKGSTFY 406

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR---- 479
                     +P+     +++R M +         EA    I +++ +      NR    
Sbjct: 407 VTLPFGIAAPQPDQYAEDVSERDMGLGEND---AGEARGAHILLVDDD----VFNRTIIG 459

Query: 480 AVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
           A  + +GY + +    K     LE+    ++           +            K   +
Sbjct: 460 AWLRRWGYRLREATNGKEALAVLEEERFDLILMDEQMPGMSGIETVDRIRADARWKNIPV 519

Query: 539 LSLRIIIKKLPFSSCYSLTMHD 560
           +++     K       +  M+D
Sbjct: 520 IAVTANAMKGDRERFLAAGMND 541


>gi|311068828|ref|YP_003973751.1| two-component sensor histidine kinase [Bacillus atrophaeus 1942]
 gi|310869345|gb|ADP32820.1| two-component sensor histidine kinase [Bacillus atrophaeus 1942]
          Length = 595

 Score =  344 bits (883), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 90/364 (24%), Positives = 156/364 (42%), Gaps = 24/364 (6%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            +  E  QL +IL + +DG+  IN +G IL TN    +           +   V  + + 
Sbjct: 247 ALNQEKEQLSNILSSMADGVITINIDGTILVTNPPAERFL---QAWYYEQNMNVQADDHL 303

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
           P          ++ +  Q +E    G       + L   +            + D++E +
Sbjct: 304 PPEAKELFQNTVNTEKEQMIEMTLQGR----SWVLLMSPLYAQSHVRGAVAVLRDMTEER 359

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           +                  + DF+A VSHE+RTP++ + G+SE I +       +    E
Sbjct: 360 RL--------------DKLREDFIANVSHELRTPISMLQGYSEAIVDDIASSEDD--RKE 403

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
            A  I      +  +VNDLLD++++ESG   LH+  V+LDE + +        A EK I 
Sbjct: 404 IAQIIYDESLRMGRLVNDLLDLARMESGHTALHYVKVNLDEFLEKIFRKFSGVAKEKNIS 463

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +    + N      D   ++Q+  N++ NA+  T SGG + I+     +  + + V+D+G
Sbjct: 464 LTDDISLNETEFAFDEDKMEQVFTNLIDNALRHTQSGGTVHIAVQSVKDG-LKIDVKDSG 522

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
            G+   +L    + F +   ++     GTGLGL + K +V+A+ G   + S   KGT   
Sbjct: 523 SGIPEEDLPFIFERFYKADKARTRGRAGTGLGLAIVKNIVEAHNGSITVHSRIDKGTTFT 582

Query: 806 IIFP 809
              P
Sbjct: 583 FYIP 586


>gi|256751996|ref|ZP_05492865.1| PAS/PAC sensor signal transduction histidine kinase
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|256749106|gb|EEU62141.1| PAS/PAC sensor signal transduction histidine kinase
           [Thermoanaerobacter ethanolicus CCSD1]
          Length = 361

 Score =  344 bits (883), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 85/370 (22%), Positives = 174/370 (47%), Gaps = 24/370 (6%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +    ++     +L +IL++  +G+   +    IL  N A  K+     +D++ +     
Sbjct: 6   KETIEELNDRNAKLEAILKSIVNGVIAFDNNEKILLINDAARKILNIKEKDLIGRHILEI 65

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-CYSLTMH 559
           +     S ++ +  ++       +         K  K+ +   I+  +   +  + L + 
Sbjct: 66  VR---NSKLHDFFEDVKKNKNSPSKSLELNVFNKHLKVYT-SPILHPISHQNLGFVLIID 121

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           DI+E ++ +                +S+F+A VSHE+RTPLT+I GF E +   R G + 
Sbjct: 122 DITEMRRLE--------------KIRSEFVANVSHELRTPLTSIRGFIETL---RNGAID 164

Query: 620 NPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
           NP+  + + + ID     +  ++ND+L +S+IE+ K     E + LD  + + + ++   
Sbjct: 165 NPQARDKFLDIIDFESERLTRLINDILTLSEIENVKEGYPKEEIELDNEIEDILYIMDKV 224

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738
           A  K I ++         I  +     Q+ +N++ N I +TP GG + +ST     +++I
Sbjct: 225 ARNKNITLKKDLNCTDLVIKTNKDRFHQMMINLIDNGIKYTPEGGFVKVSTR-EEGDKII 283

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           + V D G+G++   + +  + F ++  S+  +  GTGLGL + K +V++  G+ ++ S  
Sbjct: 284 ITVEDNGIGISKENIPRLFERFYRVDKSRSRKLGGTGLGLAIVKHIVESMKGEIFVESEV 343

Query: 799 AKGTLIEIIF 808
            +GT   I F
Sbjct: 344 GRGTKFIIKF 353


>gi|291568909|dbj|BAI91181.1| two-component hybrid histidine kinase [Arthrospira platensis
           NIES-39]
          Length = 933

 Score =  344 bits (883), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 114/589 (19%), Positives = 223/589 (37%), Gaps = 32/589 (5%)

Query: 239 KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE 298
           ++ +  ++      +            +++L + +    ++      ++  G        
Sbjct: 104 EIIAKIQHQLEWRSLQIQLDQVTDNHPQTTLGKYQVAADLSDFSAIIQELIGVKPEEIMA 163

Query: 299 SFEYL-SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYK 355
           + + L    +   +       E       ++  +         G    AN  F  L  Y 
Sbjct: 164 NPKMLMDIIDMKQVEQRLALRETQLRAIFEQAAVGINQADIKSGLFIRANQCFCELLGYS 223

Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
             +  +      T        D     P+M         + S     +  N   ++    
Sbjct: 224 EHELYQK-----TFEQVTHPEDLIRCLPLMQELHRGEIESVSLEKRYLHKNG-MAIWTKG 277

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA--IINREGI 473
                 N   E +    I  +  D R  +  ++    +L SI       I   +++ + +
Sbjct: 278 SFSLIYNSQGEAISHLAIVVDISDRRRAEEALKFSQARLESIATNIPGAIYSYVVSSDNL 337

Query: 474 I--LSTNRAVSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
                 +    +LF    E +L   K     +  +        +  + S     +     
Sbjct: 338 FGFEYISEGCRELFELEAEQVLADSKILLQQIHPDDVPTYYQKI--MDSQADLSSFSHEW 395

Query: 530 LGSTKEEKLLSLRIIIKKLPFSSC---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
                  K   +    +     +    +   + DIS+ KQ + +L  AK++AE  +  K+
Sbjct: 396 RHILPSGKTRWILGNCRPEKRPNGDILWQGVVLDISDRKQAEEELVRAKEVAEAANQAKT 455

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
            FL  +SHE+RTPL AI+GF++++    +G           N I RSG  +L ++ND+LD
Sbjct: 456 TFLTNMSHELRTPLNAILGFTQLL---NYGDNLTEHQHNNLNIIQRSGEHLLSLINDILD 512

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVK 705
           +SKIE+G++ +  +   L   + E   L  L A++K + +   ++ ++PR I  D   ++
Sbjct: 513 LSKIEAGRVTVSDDDFDLWRMLDEIKDLFSLKASQKNLYLDCVYSPDLPRYIRGDRLKLR 572

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHT------SNEEVILRVRDTGVGMTNYELEKAMKP 759
           QI +N++ NAI FT  G +++I+  H           + + V D+GVGMT  E+ +  +P
Sbjct: 573 QIMINLIGNAIKFTEQG-RVVITADHKFISSSPPICCLQIAVTDSGVGMTPEEIAQLYEP 631

Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           F Q       + EGTGLGL + +  +     +  + S    GT  +   
Sbjct: 632 FFQAQAGIDSQ-EGTGLGLTICQKYLQLMGAEIEVISEVGHGTTFKFKL 679



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/125 (10%), Positives = 30/125 (24%), Gaps = 6/125 (4%)

Query: 93  GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ--NTWYGKTTLW 150
           G     ++   + +G    ++       V+    +     +   L R    +   +    
Sbjct: 207 GLFIRANQCFCELLGYSEHELYQKTFEQVTHPEDLIRCLPLMQELHRGEIESVSLEKRYL 266

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
              G  + +    +   IY+   E        IV             K    +   +   
Sbjct: 267 HKNG--MAIWTKGSFSLIYNSQGE--AISHLAIVVDISDRRRAEEALKFSQARLESIATN 322

Query: 211 KKGHS 215
             G  
Sbjct: 323 IPGAI 327


>gi|284052794|ref|ZP_06383004.1| two-component hybrid sensor and regulator [Arthrospira platensis
           str. Paraca]
          Length = 549

 Score =  344 bits (883), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 99/400 (24%), Positives = 184/400 (46%), Gaps = 20/400 (5%)

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIA---IINREG--IILSTNRAVSKLFGYP 488
           E    + +     ++    +   I      G+    +++ +G    +  +    ++FG  
Sbjct: 8   ETALRERQKAADTIKKSEDRFGRIANNMP-GVLYQYVLHPDGSHNFMYMSERCQEIFGLD 66

Query: 489 VEDILRK--PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS-LRIII 545
            + I R         E      +   +    +     + E   +  + E K +  +    
Sbjct: 67  ADTITRDANQLFQLFEAEDFISLKASILLSATTLNTWSWEGKLVTPSGENKWIQGISQPE 126

Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
           +++     +   + DISE K  + +L       ++ +  K +FLA +SHE+RTPL  I+G
Sbjct: 127 RQVNGDIVWDGVVVDISERKLMEIELQKTVAELDRATRLKDEFLANMSHELRTPLNGILG 186

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
            SE +K    G L N         I++SG  +L++++D+LDISKIE+GK+ L+   V + 
Sbjct: 187 MSEALKEGILGAL-NSNQHHAIAMIEKSGKHLLELISDILDISKIEAGKLELYLTEVRVQ 245

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGG 723
           E  + +++LV   A  K+I I  +    + +  I  D R ++Q+ +N+LSNA+ FT   G
Sbjct: 246 ELCTSSLTLVNHLAFTKQINIEINIPQALEKTLIKVDNRRLRQVLINLLSNALKFTHKSG 305

Query: 724 QIIIST--------THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           +I ++           ++ + +   V D G+G+   +L K   PF QI +S   +  GTG
Sbjct: 306 KINLNVGIKTSPNAAISTPQSIYFSVIDNGIGIAPDDLNKLFLPFTQIDSSLNRQYSGTG 365

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
           LGL L K +++ + G   + S   KG+   +  P  +TS+
Sbjct: 366 LGLALVKQIIELHGGCVEVSSQLGKGSCFTVYLPYQETSN 405


>gi|332525071|ref|ZP_08401250.1| putative hybrid sensor and regulator [Rubrivivax benzoatilyticus
           JA2]
 gi|332108359|gb|EGJ09583.1| putative hybrid sensor and regulator [Rubrivivax benzoatilyticus
           JA2]
          Length = 820

 Score =  344 bits (883), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 124/744 (16%), Positives = 253/744 (34%), Gaps = 67/744 (9%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKRQNTWYG 145
           W +DA   L     +   T      +  G    ++       +  + +   L  +  +  
Sbjct: 114 WELDAEHRLVAAYRQRGDTSPLAGTEARGRLPWELPQFQCDDETLDLLRADLDARAPFRD 173

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD---- 201
           +   W +      + + ++  P       F+GF  +G+      + D R      +    
Sbjct: 174 RLVHW-LGADGRPLSLLVSGEPRRDERGGFAGF--WGVARDVSAEMDARRALAAAETRCE 230

Query: 202 ----KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257
               +  + L   ++G          +         L     + +     + + +  + +
Sbjct: 231 ELFARIPTPLVLHRRGRVLDANPAALVLLGCDMLETLVGHELLGAYEAGESRERERRRFD 290

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
           +        +              + + +     ++         LS     +     ++
Sbjct: 291 ELEGAPVGTALTIADFRLQPRGGERLSVRAISVRIEAEGG--PATLSIYADDTERLAAEQ 348

Query: 318 GENLTPETVDKC----PIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
               +   +       P    +     G    AN +F+  T + + D +        L  
Sbjct: 349 TLRRSEAVLAHLFASSPELITLTDLGTGRFTMANDTFVRATGFAAADVVGRTAIELGLWL 408

Query: 372 APKLSDNNAIK----------PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
             +     A +          P      D   ++             + L +      + 
Sbjct: 409 HDEQRRQFAEQMQRSGTATDLPADFRARDGRVLSVLVSGTRFSVEGHDYLVVNARDVTET 468

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
            +                                +IL+  S GIA+  R G  +  NR  
Sbjct: 469 ERSRRERE--------------------------AILDNASIGIAVT-RGGRFMMANRRF 501

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
            ++FG+P   ++ +P       +   ++      + +L   + +E       ++      
Sbjct: 502 EQMFGWPPGGLVERPAAAVWPGSD-EIVEIARGTLPALARGEPVEIEGHAQRRDGSTFLA 560

Query: 542 RIIIKKL----PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
           R+++K +    P        + D++E ++ + +L+ A+  AE  S  KS FLA  +HE+R
Sbjct: 561 RLVVKAVDPVDPARGGAVWIVEDVTERREFERRLAAARDAAEAASRAKSAFLANTNHELR 620

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
            PL  +I  +++ ++     L      +Y ++I  S   +  IV+D+LD+SKIE+G+M L
Sbjct: 621 NPLNGMINLAKLARD---AQLDEQVRQQYLDHIAESAQSLAAIVSDILDVSKIEAGRMEL 677

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAI 716
             EP  L E +  A  +    A  + + +       +   ++ D   V+QI  N L NA+
Sbjct: 678 ASEPFDLVELLHGAQRVYATMAAARSLTLDFDIGPGLDGTVVGDPLRVRQIVTNFLGNAL 737

Query: 717 HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
            FT +GG   +         V L V DTG G+      +  +PF Q   S   R  GTGL
Sbjct: 738 KFTAAGGV-RVVVRRVPAGRVRLEVHDTGPGIDPATQARLFRPFTQADESTTRRFGGTGL 796

Query: 777 GLPLAKAMVDANMGKFYIFSTPAK 800
           GL + + +     G+  + S P +
Sbjct: 797 GLSICRELATLMGGEVGVDSQPGR 820


>gi|109391496|gb|ABG33876.1| Yen1 [Yersinia sp. MH-1]
          Length = 1522

 Score =  344 bits (883), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 116/648 (17%), Positives = 233/648 (35%), Gaps = 38/648 (5%)

Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS 242
           +      D +  AL  +       + ++K+    V +    I          +   ++  
Sbjct: 369 LARNMTADLERLALVAKNTSNAVVITDVKRNIVWVNEGFERITGYSQAEAFGKSPGRLLQ 428

Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302
                    D     +  +          +    T +  +Y  +       N+  E   +
Sbjct: 429 CKNT-----DRGVASQMRVALDAGEPFKGEIVNCTKSGQEYWVELEIQPRYNDKNEPIGF 483

Query: 303 LSHRNHPSLSAYFDEGE-------NLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYK 355
           ++  +  S      +         +    T++   I       G +   N +F  ++ Y 
Sbjct: 484 MAIESDISERKATYQRLEVALRENDALLSTLNLHGITSTADRDGIITDVNDAFCTISGYS 543

Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
             + +      +  L        +  + +    ++   I+    +     +  +   +  
Sbjct: 544 REELMGQ----TYRLVDSHTHSTDFWQSMWNDIANG--ISWRGEICNKAKDG-SLYWVDT 596

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
                 N   +      I+ +    +  +  + I   QL    +    GI   N     L
Sbjct: 597 TIAPFNNSSGQVERYISIQVDITANKNQQANLIIAKNQLVRAADVAELGIWTWNIPEDTL 656

Query: 476 STNRAVSKLFGYPVEDILRKPF-----TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530
           S +  ++ ++G P E++   P         L Q     +   +   L            +
Sbjct: 657 SFDDRMNDIYGVP-EELHNAPIPLAYWYSLLHQEDVPNVKSAIKAALENKSVYRQVFRIV 715

Query: 531 GSTKEEKLLSLRIIIKKLPFSSCYS--LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
               +   +     +++              DI++ ++ +N L  A++ AEK +  KS F
Sbjct: 716 VKN-QVHFIQSTGTVEQDENGKALLMMGINRDITQQREAENILKTAREAAEKANKAKSAF 774

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
           LA +SHE+RTP+ AI+G   +++        + +  +YA   + +   +L ++ND+LD S
Sbjct: 775 LANMSHELRTPMNAILGMLTLLRRTGL----DRKQADYAVKSEAATRTLLRLLNDILDFS 830

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQI 707
           KIESGKM L   P  +   + +   ++  Y   K++ +      ++P+ +  D   ++QI
Sbjct: 831 KIESGKMELECIPFDIHIMLRDLAVILSSYLKVKKVEVLFDIDPSLPQFVEGDSMRLQQI 890

Query: 708 ALNILSNAIHFTPSGGQII-ISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIP 764
             N+  NA+ FT  G  ++ I      + +V L   VRDTG+G+     E     F Q  
Sbjct: 891 LTNLGGNALKFTELGEVVLFIKVIAQDSHQVTLHFGVRDTGIGIAPENQESIFSGFTQAE 950

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL--IEIIFPL 810
            S   R  GTGLGL +++  V    G   + S   +G+L    I  PL
Sbjct: 951 ASTTRRFGGTGLGLVISQRFVALMGGTLTLESQLGQGSLFHFTITLPL 998



 Score = 83.9 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 56/421 (13%), Positives = 112/421 (26%), Gaps = 36/421 (8%)

Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH 233
           EF G RGFG +   RV  +         +     +   +     + +   I     P   
Sbjct: 111 EFPGVRGFGFIQ--RVQRNQLNSFIADVRADGAPNYALRQLQDKQHDDLYIIRYIEPSEG 168

Query: 234 LRMKN--KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291
            +      V S     A     + + K  L  +        +    +            T
Sbjct: 169 NQGAEGLDVGSEPVRRAAVLSAIDSGKPTLSGAIHLVQSNFKAPGVLLFVPVYIYGSNPT 228

Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGE----NLTPETVDKCPIPF---FVYSHGNLFYA 344
                + S   + +          D  E     +  E  D          ++   +   A
Sbjct: 229 TPAERRASLVGVLYSPIAIAELLSDIPESMNGRVDVELFDSLNDLSNKNLIFDADSSKSA 288

Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
           +          S  +++    LS  +           + + L  S      A        
Sbjct: 289 DF---------SPTELQSDKVLSARIFHSTNVLRLPGRDMTLRISSTPTFEAQI------ 333

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
              E  +      F         +             +  R M  ++ +L  + + TS+ 
Sbjct: 334 ---ERYVPWLLFAFGLLLSSAFALLIRQQVSGRNRAEMLARNMTADLERLALVAKNTSNA 390

Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ-NTPSVMNHYLTEILSLDLRQ 523
           + I + +  I+  N    ++ GY   +   K     L+  NT   +   +   L      
Sbjct: 391 VVITDVKRNIVWVNEGFERITGYSQAEAFGKSPGRLLQCKNTDRGVASQMRVALDAGEP- 449

Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAE 579
             +   +  TK  +   + + I+           +     DISE K    +L  A +  +
Sbjct: 450 -FKGEIVNCTKSGQEYWVELEIQPRYNDKNEPIGFMAIESDISERKATYQRLEVALREND 508

Query: 580 K 580
            
Sbjct: 509 A 509



 Score = 70.8 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/375 (8%), Positives = 93/375 (24%), Gaps = 17/375 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP--NNHIGDLLKRQNTWYGK 146
            D    +  ++E   +  G    +  G     +    + D    + +   L     + G+
Sbjct: 394 TDVKRNIVWVNEGFERITGYSQAEAFGKSPGRLLQCKNTDRGVASQMRVALDAGEPFKGE 453

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF--GIVHVNRVDNDPRALGKRLDKKF 204
                  G      ++L   P Y+   E  GF      I              +  D   
Sbjct: 454 IVNCTKSG--QEYWVELEIQPRYNDKNEPIGFMAIESDISERKATYQRLEVALRENDALL 511

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
           S L+      ++         +          + ++   T                +   
Sbjct: 512 STLNLHGITSTADRDGIITDVNDAFCTISGYSREELMGQTYRLVDSHTHSTDFWQSMWND 571

Query: 265 EESSLPEQEDF--HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE----G 318
             + +  + +      + + Y          N+S +   Y+S +   + +          
Sbjct: 572 IANGISWRGEICNKAKDGSLYWVDTTIAPFNNSSGQVERYISIQVDITANKNQQANLIIA 631

Query: 319 ENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
           +N      D   +  + ++   +    +     +      +++  A        +    +
Sbjct: 632 KNQLVRAADVAELGIWTWNIPEDTLSFDDRMNDIYGVP--EELHNAPIPLAYWYSLLHQE 689

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
           +       +  +             +  N      +      + ++  + +   GI  + 
Sbjct: 690 DVPNVKSAIKAALENKSVYRQVFRIVVKN--QVHFIQSTGTVEQDENGKALLMMGINRDI 747

Query: 438 VDTRINKRKMEIEVM 452
              R  +  ++    
Sbjct: 748 TQQREAENILKTARE 762



 Score = 58.1 bits (139), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 27/251 (10%), Positives = 74/251 (29%), Gaps = 12/251 (4%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKRQNTWYGKTT 148
           D  G + ++++      G    +++G     V S     D    + + +    +W G+  
Sbjct: 524 DRDGIITDVNDAFCTISGYSREELMGQTYRLVDSHTHSTDFWQSMWNDIANGISWRGEIC 583

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +G+  +V   +A  P  + + +   +    +      + + +A       +     
Sbjct: 584 NKAKDGSLYWVDTTIA--PFNNSSGQVERYISIQV--DITANKNQQANLIIAKNQLVRAA 639

Query: 209 EIKKGHSSVEKEKYDIFSQQSP-PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
           ++ +          D  S          +  ++ +     A+   +L  E  P + S   
Sbjct: 640 DVAELGIWTWNIPEDTLSFDDRMNDIYGVPEELHNAPIPLAYWYSLLHQEDVPNVKSAIK 699

Query: 268 SLPEQEDFHTINLNQYTKKQY------FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
           +  E +  +        K Q           Q+ + ++   +      +     +     
Sbjct: 700 AALENKSVYRQVFRIVVKNQVHFIQSTGTVEQDENGKALLMMGINRDITQQREAENILKT 759

Query: 322 TPETVDKCPIP 332
             E  +K    
Sbjct: 760 AREAAEKANKA 770


>gi|321311783|ref|YP_004204070.1| two-component sensor histidine kinase [Bacillus subtilis BSn5]
 gi|320018057|gb|ADV93043.1| two-component sensor histidine kinase [Bacillus subtilis BSn5]
          Length = 589

 Score =  344 bits (883), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 88/364 (24%), Positives = 156/364 (42%), Gaps = 24/364 (6%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            +  E  QL +IL + +DG+  IN +G IL TN    +           +   +    N 
Sbjct: 247 ALNQEKEQLSNILSSMADGVITINIDGTILVTNPPAERFL---QAWYYEQNMNIKEGDNL 303

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
           P          +S +  Q +E    G       + L   +            + D++E +
Sbjct: 304 PPEAKELFQNAVSTEKEQMIEMTLQGR----SWVLLMSPLYAESHVRGAVAVLRDMTEER 359

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           +                  + DF+A VSHE+RTP++ + G+SE I +            E
Sbjct: 360 RL--------------DKLREDFIANVSHELRTPISMLQGYSEAIVDDI--ASSEEDRKE 403

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
            A  I      +  +VNDLLD++++ESG   LH+E ++++E + + I      A EK I 
Sbjct: 404 IAQIIYDESLRMGRLVNDLLDLARMESGHTGLHYEKINVNEFLEKIIRKFSGVAKEKNIA 463

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +    +      + D   ++Q+  N++ NA+  T +GG + IS     +  + + ++D+G
Sbjct: 464 LHHDISLTEEEFMFDEDKMEQVFTNLIDNALRHTSAGGSVSISVHSVKDG-LKIDIKDSG 522

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
            G+   +L    + F +   ++     GTGLGL + K +V+A+ G   + S   KGT   
Sbjct: 523 SGIPEEDLPFIFERFYKADKARTRGRAGTGLGLAIVKNIVEAHNGSITVHSRIDKGTTFT 582

Query: 806 IIFP 809
              P
Sbjct: 583 FYIP 586


>gi|242278432|ref|YP_002990561.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens DSM
           2638]
 gi|242121326|gb|ACS79022.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens DSM
           2638]
          Length = 802

 Score =  344 bits (883), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 90/390 (23%), Positives = 168/390 (43%), Gaps = 20/390 (5%)

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILRKPF 497
           + +     +     Q  ++ E     + IIN + G IL  N A ++ +GY   ++  K  
Sbjct: 285 ERKKYDLAIRESEEQYRALFENNHSVMLIINPQTGKILDANTAATEFYGYSHTELQAKNI 344

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYS 555
                          ++ +           I     K   +  + +       +      
Sbjct: 345 FDI----NVLSRAEVISNMSEAHKADRTNFIFQHRCKNGDIKDVEVFSGPFNHNGKTLLI 400

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
             +HDI++  + + +LS AK+ A + +  K +FLA +SHEIRTPL  ++G  +V+ + + 
Sbjct: 401 SIIHDITKRLKNEKELSAAKESAIRANKTKDEFLANISHEIRTPLNGVMGMLQVMNSAKL 460

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
               N  +    +   +S   +L +++D+LD+SK+E G ++L  +  SL++ + E+I+L 
Sbjct: 461 ----NQEHRNCISVALQSSRNLLRVLDDILDLSKVEMGTLDLFEDKFSLNKLLEESINLF 516

Query: 676 QLYANEKRILIRTSF-ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT---- 730
           +  A +K + +  S           D   ++QI  N++ N+I FT  G +I +       
Sbjct: 517 KPQAEKKEVDLSYSIFPETESYYFGDEGRIRQILFNLIGNSIKFTDHG-EIRVEARAGPG 575

Query: 731 -HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
                  +   V DTG+G+     E+    F Q+  S   R +G GLGL + K +++   
Sbjct: 576 TCQDKNNLHFTVSDTGIGIPEDYQERIFDSFTQVDGSLSRRYKGAGLGLAIVKRLIELME 635

Query: 790 GKFYIFSTPAKGTL--IEIIFPLYDTSHPH 817
           G   I S+   GT     I   + D   P+
Sbjct: 636 GSIKIESSLHHGTTISFTISLRIADPPEPN 665



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/177 (14%), Positives = 61/177 (34%), Gaps = 16/177 (9%)

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           +L+A +  I ++  +G ++  NR V+ +     E +  K    +L     +   H    +
Sbjct: 10  LLDANTQSILLLENDGTVIHVNRIVADILKTTPESLTGKNIFDYLPPELAAYRKHMFDNV 69

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT-MHDISEWKQEKNKLSHAK 575
           +        +      T+E +++                     DI+E   ++ +L+H+K
Sbjct: 70  VKSGEPIKFQD-----TREGRIILHSHYPIIENDKVSRVAIYAEDITEVINKERELAHSK 124

Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR-----FGPLGNPRYIEYA 627
            +          F    + ++   + +I    E++  +      F  L +    E  
Sbjct: 125 HLQSVLYEIICQF--NSAKDLNELMQSIH---EIMLKELKAKNFFIALIDQEQEELV 176


>gi|15894978|ref|NP_348327.1| sensor histidine kinase [Clostridium acetobutylicum ATCC 824]
 gi|15024665|gb|AAK79667.1|AE007679_13 Sensory histidine kinase (with HAMP and PAS domains) [Clostridium
           acetobutylicum ATCC 824]
 gi|325509115|gb|ADZ20751.1| Sensory histidine kinase (with HAMP and PAS domains) [Clostridium
           acetobutylicum EA 2018]
          Length = 566

 Score =  344 bits (883), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 83/365 (22%), Positives = 163/365 (44%), Gaps = 30/365 (8%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           R+   +  +L +IL +   G+  ++R+  I+  N    K+FG     I +          
Sbjct: 230 RESVEKQKKLEAILVSMDSGVIAVDRKHKIIMINPYAEKIFGIDKNIIGQSLMDCIRNYE 289

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564
              + N        +      E+     T +         I            + DI++ 
Sbjct: 290 FEDIFNKRAEGYAEIKTSWPKERNLRIKTAD---------IINGYECIGTVAVVQDITDI 340

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           ++ +              + ++ F+A VSHE++TPLT+I GF+E ++        + +  
Sbjct: 341 RKLE--------------NMRTQFVANVSHELKTPLTSIKGFAETLR----YVEDDNQKG 382

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           E+ + ID   + +  +++D+L +S IE     +  E   ++E +     L++  A+ K I
Sbjct: 383 EFLDIIDDEVDRLTRLISDILTLSDIEIRPF-MKKEEFDVNEIIKAVCGLLEKSASRKNI 441

Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744
            ++  F  ++P ++ D    KQ+ +N++ NAI +T +GG++ +   +T ++ VI+ V+D 
Sbjct: 442 SLKV-FGEDVPNLIGDNDKFKQMIINLVDNAIKYTEAGGEVSVYKKYTKDD-VIISVKDN 499

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           GVG+    L++  + F ++  ++     GTGLGL + K +V    G   I S    GT  
Sbjct: 500 GVGIPKEHLQRIFERFYRVDKARSRANGGTGLGLAIVKHIVLNFNGSINIESKLGVGTEF 559

Query: 805 EIIFP 809
            I  P
Sbjct: 560 IITIP 564


>gi|320106380|ref|YP_004181970.1| multi-sensor signal transduction histidine kinase [Terriglobus
           saanensis SP1PR4]
 gi|319924901|gb|ADV81976.1| multi-sensor signal transduction histidine kinase [Terriglobus
           saanensis SP1PR4]
          Length = 791

 Score =  344 bits (883), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 106/642 (16%), Positives = 201/642 (31%), Gaps = 45/642 (7%)

Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ---SPPPHLRMKNKVSS 242
            +RV     +         S + E       V      +               +  V  
Sbjct: 169 ESRVRQRVESALTVERNFVSAVLETAGALVVVMDTAGRVVRFNRACEAISGFATREIVGR 228

Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLP--EQEDFHTINLNQYTKKQYFGTLQNNSKESF 300
                   ++          T    S P   ++ +          +     L +   E  
Sbjct: 229 YLWETLIPEEDRAEANRAFETIRSGSFPVSFEDRWKVRGGGLRRIQWTATALMDAQNELN 288

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIP----FFVYSH-GNLFYANPSFLLLTKYK 355
             ++     +L    ++    +     +         F ++  G L   N        Y 
Sbjct: 289 FVIATGIDVTLQRVAEDTLRQSEAQYRQLVEGSLGVVFTHTPKGRLISLNTYGAESLGYG 348

Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
             + +  +           + D + +         R    A      +  N E       
Sbjct: 349 IEEMLGRS-------LTDFMPDEDFVAFDAYLEKMRKTGEAQGTFCLLHRNGERRTLAYR 401

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
                      +    G   +  +    +  +    +Q  SIL++  DGI   + +G+  
Sbjct: 402 NRLIAP--EGRDRFVLGFGVDITEKVRAEESLSALTLQSNSILDSVGDGIFATSLDGVAT 459

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLE-----QNTPSVMNHYLTEILSLDLRQTLEKITL 530
             N A + + GY   +IL +  +  L          +     +   L             
Sbjct: 460 VVNPAAASMLGYGTHEILGRKISDLLRLTRADGTEYADDESPIERSLHQREAVRASTDLF 519

Query: 531 GSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
              K+     +  +   +          +   D +E +                   K +
Sbjct: 520 WR-KDGSSFPVEYVACPIVKDGRATGIVVAFTDTTERR--------------ALDKMKDE 564

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           F++ VSHE+RTPLT++     +I +         +  +       +   ++ +VND+L++
Sbjct: 565 FISTVSHELRTPLTSMRASLGLIASGALASRP-EKQKQMLEIAIGNTERLVSLVNDILEL 623

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707
            +I SGK  LH    S D+    A  L+   A +  I            +  D   + Q 
Sbjct: 624 ERIGSGKAELHSTLSSADDLFRRATGLLTGTAAKAGIKF--EIEARGVNVWGDPDRILQT 681

Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
             N+LSNAI F+P GG+I +   + S +E  + V D G G+ N +LE   + F Q+  S 
Sbjct: 682 ITNLLSNAIKFSPEGGKIRLEARNLSGDEAQIEVHDHGRGIPNDKLESIFERFQQVDASD 741

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
                GTGLGL + +++V  + G  +  S   +G+      P
Sbjct: 742 SRAMGGTGLGLAICRSIVSQHGGHIWAESKYGRGSTFFFTLP 783



 Score =  107 bits (268), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 37/297 (12%), Positives = 91/297 (30%), Gaps = 9/297 (3%)

Query: 277 TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY 336
                +    Q    L+  ++        R    + +      N     ++       V 
Sbjct: 142 EATALRILSTQVMTRLELQARVRLMDNESRVRQRVESALTVERNFVSAVLETAGALVVVM 201

Query: 337 SH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIA 395
              G +   N +   ++ + + + +      + +   P+     A +     RS    ++
Sbjct: 202 DTAGRVVRFNRACEAISGFATREIVGRYLWETLI---PEEDRAEANRAFETIRSGSFPVS 258

Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
              R    +        + +      +   E         +    R+ +  +     Q  
Sbjct: 259 FEDR---WKVRGGGLRRIQWTATALMDAQNELNFVIATGIDVTLQRVAEDTLRQSEAQYR 315

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
            ++E +   +     +G ++S N   ++  GY +E++L +  T F+        + YL +
Sbjct: 316 QLVEGSLGVVFTHTPKGRLISLNTYGAESLGYGIEEMLGRSLTDFMPDEDFVAFDAYLEK 375

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM-HDISEWKQEKNKL 571
           +      Q      L    E + L+ R  +        + L    DI+E  + +  L
Sbjct: 376 MRKTGEAQG-TFCLLHRNGERRTLAYRNRLIAPEGRDRFVLGFGVDITEKVRAEESL 431



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/386 (9%), Positives = 90/386 (23%), Gaps = 27/386 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQNTWYGKT 147
           +D  G +   +       G    +++G  L +           +   + ++  +      
Sbjct: 201 MDTAGRVVRFNRACEAISGFATREIVGRYLWETLIPEEDRAEANRAFETIRSGSFPVSFE 260

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
             W + G  L   I   A  +     E +     GI     +        ++ + ++  L
Sbjct: 261 DRWKVRGGGLR-RIQWTATALMDAQNELNFVIATGI--DVTLQRVAEDTLRQSEAQYRQL 317

Query: 208 HEIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
            E   G       K  + S  +           ++   +      D+        L    
Sbjct: 318 VEGSLGVVFTHTPKGRLISLNTYGAESLGYGIEEMLGRSLTDFMPDEDFVAFDAYLEKMR 377

Query: 266 ESSLPEQED-FHTINLNQYTKKQYFGTLQNNSKESFEY---LSHRNHPSLSAYFDEGENL 321
           ++   +        N  + T       +    ++ F     +                  
Sbjct: 378 KTGEAQGTFCLLHRNGERRTLAYRNRLIAPEGRDRFVLGFGVDITEKVRAEESLSALTLQ 437

Query: 322 TPETVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK------ 374
           +   +D      F  S   +    NP+   +  Y + + +         L          
Sbjct: 438 SNSILDSVGDGIFATSLDGVATVVNPAAASMLGYGTHEILGRKISDLLRLTRADGTEYAD 497

Query: 375 ----------LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
                       +       + +R D +          I  +   +  +         + 
Sbjct: 498 DESPIERSLHQREAVRASTDLFWRKDGSSFPVEYVACPIVKDGRATGIVVAFTDTTERRA 557

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIE 450
            + M    I     + R     M   
Sbjct: 558 LDKMKDEFISTVSHELRTPLTSMRAS 583



 Score = 75.8 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 20/182 (10%), Positives = 61/182 (33%), Gaps = 7/182 (3%)

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
              + A+  +  +   +         ++ E    +  +  + +E   + ++LE     + 
Sbjct: 140 DAEATALRILSTQVMTRLELQARVRLMDNESRVRQRVESALTVERNFVSAVLETAGALVV 199

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFT-VFLEQNTPSVMNHYLTEILSLDLRQTL 525
           +++  G ++  NRA   + G+   +I+ +      + +   +  N     I S     + 
Sbjct: 200 VMDTAGRVVRFNRACEAISGFATREIVGRYLWETLIPEEDRAEANRAFETIRSGSFPVSF 259

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKE 581
           E       +   L  ++     L  +         T  D++  +  ++ L  ++    + 
Sbjct: 260 ED--RWKVRGGGLRRIQWTATALMDAQNELNFVIATGIDVTLQRVAEDTLRQSEAQYRQL 317

Query: 582 SS 583
             
Sbjct: 318 VE 319



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/306 (11%), Positives = 83/306 (27%), Gaps = 17/306 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD------ILHIDPNNHIGDLLKR 139
            +     G    ++      +G    +++G ++ D+          + D  + I   L +
Sbjct: 449 IFATSLDGVATVVNPAAASMLGYGTHEILGRKISDLLRLTRADGTEYADDESPIERSLHQ 508

Query: 140 QNTWYGKT-TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
           +      T   W  +G++   P++  A PI          R  GIV       + RAL K
Sbjct: 509 REAVRASTDLFWRKDGSSF--PVEYVACPI------VKDGRATGIVVAFTDTTERRALDK 560

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
             D+  S +    +   +  +    + +  +       + ++  +      +   L  + 
Sbjct: 561 MKDEFISTVSHELRTPLTSMRASLGLIASGALASRPEKQKQMLEIAIGNTERLVSLVNDI 620

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR--NHPSLSAYFD 316
             L               + +                +   FE  +              
Sbjct: 621 LELERIGSGKAELHSTLSSADDLFRRATGLLTGTAAKAGIKFEIEARGVNVWGDPDRILQ 680

Query: 317 EGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
              NL    +   P    +         + + + +  +      +    +         S
Sbjct: 681 TITNLLSNAIKFSPEGGKIRLEARNLSGDEAQIEVHDHGRGIPNDKLESIFERFQQVDAS 740

Query: 377 DNNAIK 382
           D+ A+ 
Sbjct: 741 DSRAMG 746


>gi|149178788|ref|ZP_01857370.1| probable sensor/response regulator hybrid [Planctomyces maris DSM
            8797]
 gi|148842405|gb|EDL56786.1| probable sensor/response regulator hybrid [Planctomyces maris DSM
            8797]
          Length = 1780

 Score =  344 bits (883), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 104/520 (20%), Positives = 213/520 (40%), Gaps = 26/520 (5%)

Query: 304  SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEI 362
                         + E  +   V+      +  +        +P++   T     +    
Sbjct: 1123 DISLRKQQEEALRDSEGRSKALVEASAHMVWTMTPDARTVEDSPTWREFTGQTYEE---- 1178

Query: 363  AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
                          D+          +  +               E     +     + N
Sbjct: 1179 --WKDKGWIDGIHPDDREQTLRNWQTAFESVTPLDCEYRLCNREGE-WCWTSVRAVPQIN 1235

Query: 423  QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
                 +   G+  +    +  ++++E    +L   L+A   G+A    +      +  + 
Sbjct: 1236 SEGTVLRWVGMNLDITRQKHLQQEVEANEKRLFMALKAA--GMAAWEWQPHASFWSNELY 1293

Query: 483  KLFGYP-VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
            +L G P       +     + +     +     E +  +     ++I      + ++  L
Sbjct: 1294 ELLGIPNTTSASPETLFSCVYKEDLPGLIKAWDEAVQGEKE--YDQIFRIVRPDGEIRWL 1351

Query: 542  RIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
              + + +               D ++ ++ +  L  ++K A++ +  KS FLA +SHEIR
Sbjct: 1352 AGVGEIVRDPQGNVTQIFGLNWDFTQEREGEEALRRSEKQAKQANVAKSAFLANMSHEIR 1411

Query: 598  TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
            TP+TA++G+++++     G        EY   I R+GN +L+I+ND+LD+SKIE+GK+ +
Sbjct: 1412 TPMTAVLGYTDLLI----GMEQEQEKAEYLQNIKRNGNFLLEIINDILDLSKIEAGKLEI 1467

Query: 658  HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAI 716
              E  SL+E +++  S++++ A EK +     F +++P  I  D + ++QI LN++SNAI
Sbjct: 1468 SQESFSLNEMLADLQSMMRVRAEEKNLEFGIEFISDLPERIETDPKRLRQILLNLISNAI 1527

Query: 717  HFTPSGG-QIIISTTHTSNEEVI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
             FT +G  +++I+      + V+   V DTG+G+T  +  +  + F Q   S      GT
Sbjct: 1528 KFTETGSVKVVINFLREKADAVLKFDVIDTGIGITPKQQSRLFQSFSQGDASVTRNYGGT 1587

Query: 775  GLGLPLAKAMVDANMGKFYIFSTPAKGTLI--EIIFPLYD 812
            GLGL +++ +     G   + S P +G+     I  P+ +
Sbjct: 1588 GLGLAISQRLAGMLNGNISVSSKPGEGSTFSCTINLPVRE 1627



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 64/161 (39%), Gaps = 6/161 (3%)

Query: 444  KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF-TVFLE 502
            + ++  EV +  +IL +  D I   +  G I+  N A  + FGY  ++++ K    + L 
Sbjct: 1001 QDQLYEEVARKNAILSSAIDCIITTDAAGNIVDFNPAAERTFGYTAQEVIGKTLCDLLLL 1060

Query: 503  QNTPSVMNHYLTEILSLDLRQTLEK--ITLGSTKEEKLLSLRIIIKKLPFSSC---YSLT 557
            +      +  L + L       + +        ++     + + I           ++L 
Sbjct: 1061 EEYHERYHTALEQFLKTGESDLIGRHIELPVMHQDGSHFPVELAISVTHLEDGHPFFTLC 1120

Query: 558  MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
            + DIS  KQ++  L  ++  ++      +  +  ++ + RT
Sbjct: 1121 LRDISLRKQQEEALRDSEGRSKALVEASAHMVWTMTPDART 1161



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/380 (11%), Positives = 94/380 (24%), Gaps = 28/380 (7%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCD--VSDILHIDPNNHIGDLLKRQNT-WYG 145
             DA G + + +    +T G  A ++IG  LCD  + +  H   +  +   LK   +   G
Sbjct: 1025 TDAAGNIVDFNPAAERTFGYTAQEVIGKTLCDLLLLEEYHERYHTALEQFLKTGESDLIG 1084

Query: 146  KTTLWPI---EGTNLYVPIDLAALPIYSRNREFSGFRGFGIV-HVNRVDNDPRALGKRLD 201
            +    P+   +G+  + P++LA    +  +        F +      +        +  +
Sbjct: 1085 RHIELPVMHQDGS--HFPVELAISVTHLEDGH----PFFTLCLRDISLRKQQEEALRDSE 1138

Query: 202  KKFSHLHEIKKGHSSVEKEKYDIFSQQSP--PPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
             +   L E                           +   +            D  +    
Sbjct: 1139 GRSKALVEASAHMVWTMTPDARTVEDSPTWREFTGQTYEEWKDKGWIDGIHPDDREQTLR 1198

Query: 260  PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY------LSHRNHPSLSA 313
               T+ ES  P   ++   N            +   + E          L       L  
Sbjct: 1199 NWQTAFESVTPLDCEYRLCNREGEWCWTSVRAVPQINSEGTVLRWVGMNLDITRQKHLQQ 1258

Query: 314  YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
              +  E      +    +  + +     F++N     L    +          S +    
Sbjct: 1259 EVEANEKRLFMALKAAGMAAWEWQPHASFWSNE-LYELLGIPNTTSASPETLFSCVYKED 1317

Query: 374  KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
                  A    +    +   I        I         +  +     +         G+
Sbjct: 1318 LPGLIKAWDEAVQGEKEYDQI------FRIVRPDGEIRWLAGVGEIVRDPQGNVTQIFGL 1371

Query: 434  EPEDVDTRINKRKMEIEVMQ 453
              +    R  +  +     Q
Sbjct: 1372 NWDFTQEREGEEALRRSEKQ 1391



 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/252 (9%), Positives = 60/252 (23%), Gaps = 10/252 (3%)

Query: 86   TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD-LLKRQNTWY 144
             W +       E S    +  G    +       D       +          +      
Sbjct: 1152 VWTMTPDARTVEDSPTWREFTGQTYEEWKDKGWIDGIHPDDREQTLRNWQTAFESVTPLD 1211

Query: 145  GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
             +  L   EG   +    + A+P  +        R  G+          +   +  +K+ 
Sbjct: 1212 CEYRLCNREGE--WCWTSVRAVPQINSEGTV--LRWVGMNLDITRQKHLQQEVEANEKRL 1267

Query: 205  SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH----KDDVLKTEKYP 260
              +     G ++ E + +  F        L + N  S+  E        +D     + + 
Sbjct: 1268 F-MALKAAGMAAWEWQPHASFWSNELYELLGIPNTTSASPETLFSCVYKEDLPGLIKAWD 1326

Query: 261  LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
                 E    +       +            +++      +        +     +E   
Sbjct: 1327 EAVQGEKEYDQIFRIVRPDGEIRWLAGVGEIVRDPQGNVTQIFGLNWDFTQEREGEEALR 1386

Query: 321  LTPETVDKCPIP 332
             + +   +  + 
Sbjct: 1387 RSEKQAKQANVA 1398


>gi|262173448|ref|ZP_06041125.1| hypothetical protein VII_000538 [Vibrio mimicus MB-451]
 gi|261890806|gb|EEY36793.1| hypothetical protein VII_000538 [Vibrio mimicus MB-451]
          Length = 1586

 Score =  344 bits (883), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 103/386 (26%), Positives = 172/386 (44%), Gaps = 24/386 (6%)

Query: 448  EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--NT 505
            E EV++  ++LE++ +   I++  GII   N    K+FGY  +++   P          +
Sbjct: 706  EKEVLRFKALLESSPEATLIVDPNGIIKMVNEEAEKVFGYGRDELEGYPMHRLFPHDLES 765

Query: 506  PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS--LTMHDISE 563
                +    E+   +     ++I +    +E    + I    +         +++ +I++
Sbjct: 766  ARAKHAQWNELRPGN-----QRIEIAVRSDETEFPVEISSSSVQMDDGLLISVSIRNITD 820

Query: 564  WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
                +  L  A   AE+ +  KS FLA  SHEIRTPL AI+G + ++ ++          
Sbjct: 821  RLAFEQTLKQALHDAEQATQAKSVFLANTSHEIRTPLNAILGLTHLLSDESL----TESQ 876

Query: 624  IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
                + I  SG  +L IVND+LD+SKIE+ +M L   P+ L E + E  S+    A  K 
Sbjct: 877  HRLVDKIGISGKSLLGIVNDVLDLSKIEANEMILEALPLDLREFLEEVASVFSTQAEAKN 936

Query: 684  ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH--------TSN 734
            +  +     ++P  ++AD   ++QI  N+LSNA+ FT  G  I +               
Sbjct: 937  LDFKLEMGVDLPHWVIADSMRLRQILTNLLSNALKFTSVG-HIALRAEIIDKFIWKGAEK 995

Query: 735  EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
              V   + DTG+G++    ++  KPF Q   S   R  GTGLGL +   +     GK  +
Sbjct: 996  NIVRFSITDTGIGISEEAQKRLFKPFSQADTSTSRRFGGTGLGLSIVHKLSGLMEGKIGV 1055

Query: 795  FSTPAKGTLIEIIFPLYDTSHPHDCI 820
             S   +G+      PL   S   D I
Sbjct: 1056 ESREGQGSTFWTEMPLQTLSD-EDII 1080



 Score = 39.6 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 40/141 (28%), Gaps = 2/141 (1%)

Query: 169 YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228
               REF G  GFG +   RV  D  A      ++    +   +  +  + +++ I    
Sbjct: 93  RDIEREFPGALGFGFIR--RVPVDKEADFIVAARRDDFPNFTIRTLTPHDGDRFIIQYIY 150

Query: 229 SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288
              P+L+                     E+ P LT+  + +          L        
Sbjct: 151 PEKPNLQAIGLDIGSETNRRKAALASVREQQPYLTAPITLVQADSKPRRGVLILLPVYPS 210

Query: 289 FGTLQNNSKESFEYLSHRNHP 309
              L    +    +L     P
Sbjct: 211 RMELNTPDEREKYFLGWAYAP 231



 Score = 38.9 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 12/167 (7%), Positives = 44/167 (26%), Gaps = 16/167 (9%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY---- 144
           +D +G +K ++EE  K  G    ++ G  +  +           +     +   W     
Sbjct: 726 VDPNGIIKMVNEEAEKVFGYGRDELEGYPMHRLFPHD-------LESARAKHAQWNELRP 778

Query: 145 -GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +     +       P+++++  +   +           +             K+    
Sbjct: 779 GNQRIEIAVRSDETEFPVEISSSSVQMDDGLLISVS----IRNITDRLAFEQTLKQALHD 834

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK 250
                + K    +    +              + ++  + +++    
Sbjct: 835 AEQATQAKSVFLANTSHEIRTPLNAILGLTHLLSDESLTESQHRLVD 881


>gi|158335122|ref|YP_001516294.1| two-component signal transduction sensor histidine kinase
           [Acaryochloris marina MBIC11017]
 gi|158305363|gb|ABW26980.1| two-component signal transduction sensor histidine kinase
           [Acaryochloris marina MBIC11017]
          Length = 927

 Score =  344 bits (882), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 125/667 (18%), Positives = 234/667 (35%), Gaps = 53/667 (7%)

Query: 168 IYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ 227
           +   +     F GF +     VDN      + L  +               +        
Sbjct: 9   LLGVSGALLLFGGF-VAKSLSVDNQQHQQYRTLMAQQLDKDATVNQSVLKARYALLTSY- 66

Query: 228 QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287
               P +R  ++   L E        +  ++  L    E      + F        + K 
Sbjct: 67  ---DPLVRAISEQLELQEDLKQVPGFIGNQQSLLSQLSE----NNQVFTQKEELVESFKS 119

Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPS 347
               L+N+     E +      S      +        +D   +         +      
Sbjct: 120 KNAILKNSLTYLPELVKEVRTGSAKGLSTDEAIQLESLLDNVLLYSLSSDEDLVPQIEAQ 179

Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
              L   KS   I++A   + ++   K   +   + ++   + +      A         
Sbjct: 180 ITQLEGKKSSQGIQLALAHTRMILEYKPQVDTLTRDILKLPTAQAISTLEAAYTNQYDAA 239

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
             +  +  +          +     +           ++      ++  IL + +D    
Sbjct: 240 TQTADLFRLLSFGCLLVLVSGGAYLVV----------QQQRRSNERVSGILSSLTDAFVA 289

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
           +N +  I   N   +++     + +L + F         +       + L    + + E 
Sbjct: 290 LNPQWQITYINDKAAEILQADSQQLLNQDFWQSFPDVLGADHLSDYRQALKEKQKTSFEV 349

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE------ 581
                      + L I +         SL + D++  K+ +  L    +  E        
Sbjct: 350 FYPP-----SQMWLEIRVYP--SVDGLSLFLQDVTIRKEAEASLKQMNQELETRVKARTA 402

Query: 582 -------------------SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
                              +  KS+FLA +SHE+RTPL AIIG+SE +  +    +G   
Sbjct: 403 QLASSMEAAEEAREKAEEANKSKSEFLANMSHELRTPLNAIIGYSE-MLEEDAEDMGQDD 461

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
           ++     I  S   +L+++N +LD+SK+E+G+M L+ E   +   V    + +Q  A+++
Sbjct: 462 FVPDLQKISGSAKHLLELINAVLDLSKVEAGRMELYLESFEIAPMVKTIAATLQPIADKQ 521

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
             +I      NI  + AD   V+Q   N+LSNA  FT SG ++ ++ +  + EEV+  ++
Sbjct: 522 SNMISLHCPENIGTLYADQTKVRQSLYNLLSNACKFTESG-EVSLTISEDAGEEVVFSIK 580

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG+GMT  +LEK  K F Q   S   +  GTGLGL + K  ++   G   + S    GT
Sbjct: 581 DTGIGMTPEQLEKVFKAFTQADASTTRKYGGTGLGLTITKQFIEMMGGHISVTSQYGYGT 640

Query: 803 LIEIIFP 809
              I  P
Sbjct: 641 EFTIHLP 647


>gi|51244735|ref|YP_064619.1| two-component system sensory/regulatory protein [Desulfotalea
           psychrophila LSv54]
 gi|50875772|emb|CAG35612.1| related to two-component system sensory/regulatory protein (hybrid
           family) [Desulfotalea psychrophila LSv54]
          Length = 1041

 Score =  344 bits (882), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 100/389 (25%), Positives = 181/389 (46%), Gaps = 9/389 (2%)

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
                    K++       +IL+  S+ I  I+ +  +LS N    + F Y  E+I+ + 
Sbjct: 295 RKQVASRTTKLQASEAWTVAILDTASNPIITIDEDETVLSFNLGAERSFAYSAEEIIGQK 354

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKL--PFSS 552
             + L        + + T   + D    ++  +      K   +  + + + ++      
Sbjct: 355 VKILLPDLYEKYEDEFATSFFAKDDAHLIDMDREIDARRKNGTIFPIHLSVGEMIVSGKR 414

Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
            + + + D+S  KQ   +L  A+  AE     K+ FLA +SHEIRTP+ AI+GF  ++  
Sbjct: 415 MFVIILVDLSVQKQRNLELELARDAAEAAMEAKAIFLANMSHEIRTPMNAILGFLAIVLE 474

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
               P       ++      S   +L I+ND+LD+SK +SG+M L F    L   + +A+
Sbjct: 475 SSSLPAD---LRKHIVTAHGSAESLLVIINDVLDVSKFDSGRMELVFSVFHLPRTIGKAL 531

Query: 673 SLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTT 730
             + + A EK + I  ++  ++P   L D   ++Q+ +N+++NAI FT  G   I +  T
Sbjct: 532 QTLYMPAQEKELNIHLNYDEDLPYCFLGDSVRLRQVIINLVANAIKFTEEGSITIEVKGT 591

Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
              ++ ++  V DTG+G+   ++ +  +PF Q  +S      GTGLGL + K +VD   G
Sbjct: 592 SGEDDLLLFTVVDTGIGIRPEQVARIFEPFTQADDSSTRNIGGTGLGLAICKEIVDLMGG 651

Query: 791 KFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819
           + ++ S   KG+    + PL       DC
Sbjct: 652 RIWVESEKGKGSSFNFMVPLPRAECIKDC 680


>gi|170750082|ref|YP_001756342.1| multi-sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
 gi|170656604|gb|ACB25659.1| multi-sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 1124

 Score =  344 bits (882), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 116/661 (17%), Positives = 214/661 (32%), Gaps = 50/661 (7%)

Query: 182 GIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS 241
            ++     + + RA  +        + E      +   E  D     S   +       +
Sbjct: 191 AVIREQHREINARARAQEAANHQLTMAEQLASVGNWRIELGDGQPVWSASLYAIAGRDPA 250

Query: 242 SLTEY------YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN 295
           +   +        H DD  + E          +  + E        +       G  +  
Sbjct: 251 TPPPHLDVFSEIYHPDDRARLEAIVADAVARRTRFDFEARLLRPDGELRDVVVRGMARGE 310

Query: 296 SKESF---EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLL 350
              +      +               E       +  P+  +      G   Y N  F  
Sbjct: 311 GASAGLFGVLIDVTERRRAEDEVRRSELRYRGLAEALPLLVWTMRVGDGRATYVNAQFQA 370

Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE-- 408
                  +          L+              +      T  +   R   I+ +    
Sbjct: 371 YYGPIGPE------RAERLVRNHPEDAAAMEAAWIRAVETGTGYSGQWR---IRRHDGVY 421

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468
               ++ IP              G   +  D    +  +E     L   L+A   G    
Sbjct: 422 RWHKLSLIPIRLDPADGAVAEWLGTALDVDDIVTARLAVEEARGLLDIALDAAEAGTWDW 481

Query: 469 NREGIILSTNRAVSKLFGYP----VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
           +    +   +   +++ G P       I    +T  ++ +  + +   +   +       
Sbjct: 482 DMRTGLAVLSPESARMHGLPDTGGAHTISASAWTALIDPDDVADVWTEIRRAVESGTPYA 541

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA-------KKI 577
            E          +  +L                  DI+E K  +  L  A       +  
Sbjct: 542 AEFRVGARWLYARGRTLS---GADGQPQRMVALHLDITERKAVEAALRTATRDAEAARTE 598

Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
           AE+ S+ KS+FLA +SHEIRTPL  I+G+++++ +     + N         I  SG  +
Sbjct: 599 AERASAAKSEFLAAMSHEIRTPLNGILGYADLLLDG--DAIQNEDRRR-LELIQSSGAAL 655

Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR- 696
           L +VND+LD SKIE+G++ L      L   V   +S+V+  A    + I       +P  
Sbjct: 656 LTVVNDILDFSKIEAGELTLDPVTFPLVSIVDGTVSIVRGSALRSGLAIEARIDPALPTF 715

Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---------EVILRVRDTGVG 747
           ++ D   ++Q+ LN+L+NA+ FTP G  + +                  V   V DTG+G
Sbjct: 716 VVGDAGRLRQVLLNLLNNAVKFTPEGS-VTVIVEREDAGGAPDGRPGDTVRFSVVDTGIG 774

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           +   + ++  K F Q+  S   R  GTGLGL +++ +V    G+  + S    G+     
Sbjct: 775 IAPAQQDRLFKRFSQVDGSISRRFGGTGLGLAISRHLVTLMGGEIGVESREGAGSTFWFR 834

Query: 808 F 808
            
Sbjct: 835 L 835



 Score = 55.0 bits (131), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 25/320 (7%), Positives = 70/320 (21%), Gaps = 15/320 (4%)

Query: 78  PIPRTVRFTWNID-AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-D 135
                +   W +    G    ++ +     G    +     +   +              
Sbjct: 344 AEALPL-LVWTMRVGDGRATYVNAQFQAYYGPIGPERAERLVR--NHPEDAAAMEAAWIR 400

Query: 136 LLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRV-DNDPR 194
            ++    + G+  +   +G  +Y    L+ +PI     + +     G             
Sbjct: 401 AVETGTGYSGQWRIRRHDG--VYRWHKLSLIPIRLDPADGAVAEWLGTALDVDDIVTARL 458

Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254
           A+ +        L   + G    +                 + +   + T   +    ++
Sbjct: 459 AVEEARGLLDIALDAAEAGTWDWDMRTGLAVLSPESARMHGLPDTGGAHTISASAWTALI 518

Query: 255 KTEKYP--LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
             +           +            +          TL     +    ++     +  
Sbjct: 519 DPDDVADVWTEIRRAVESGTPYAAEFRVGARWLYARGRTLSGADGQPQRMVALHLDITER 578

Query: 313 AYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
              +          +                A   FL    ++    +    G + LL  
Sbjct: 579 KAVEAALRTATRDAEAA-----RTEAERASAAKSEFLAAMSHEIRTPLNGILGYADLLLD 633

Query: 373 PKLSDNNAIKPVMLYRSDRT 392
                N   + + L +S   
Sbjct: 634 GDAIQNEDRRRLELIQSSGA 653


>gi|315126040|ref|YP_004068043.1| sensor protein [Pseudoalteromonas sp. SM9913]
 gi|315014554|gb|ADT67892.1| putative sensor protein [Pseudoalteromonas sp. SM9913]
          Length = 1101

 Score =  344 bits (882), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 110/514 (21%), Positives = 205/514 (39%), Gaps = 25/514 (4%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
            S      + E      V       + +    N  Y +P   +L  Y   D   +     
Sbjct: 287 ESSREAIKQSEARYELAVKGSNDGIWDWDIVTNEVYFSPRISVLLGYDENDKNALPHCAD 346

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
            L       D+       +     + I  +        +       T       N+  + 
Sbjct: 347 ALY-KLLHPDDITKHKKQIANHLISNIPFNYDYRLKTKSGA-YRYFTVKGMALRNEHNKA 404

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQ---LCSILEATSDGIAIINR--EGI-ILSTNRAV 481
           +   G   +  + + +++ ++    Q   L   +E+ + GI+I +   +G  ++  N   
Sbjct: 405 IRMAGSVTDITEQKRSQKALKQAKEQNDLLAQAIESCNVGISIADASVQGFPLVFLNSEF 464

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
            K+ GY  E++L    ++    NT       +T  +     Q +    L   K+      
Sbjct: 465 EKITGYSKEEMLGINCSLLQGPNTDKNAIDIITNAIKTLKTQRI--EILNYKKDGTEFWN 522

Query: 542 RIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
            + I  +         Y     DI+E K     L  AK  AE+ +  KS+FLA +SHEIR
Sbjct: 523 SLQISPVFNEQQQLTAYVGIQQDITEQKAANQLLIEAKAAAEQANIAKSEFLAAMSHEIR 582

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TP+  ++G   +I +       N +     +    S N +L+I+ND+LD SK+++GK+ L
Sbjct: 583 TPMNGVLGMLNLILDSSL----NEKQHHQVSIALNSANSLLNIINDILDFSKVDAGKLEL 638

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAI 716
                +L   + + I  + ++A+ K I +     +     ++ D   +KQI  N+++NA+
Sbjct: 639 EELEFNLCNMLDDFIETIAIHAHSKNIPLMLDIEHLEYAFVIGDAGRLKQILTNLVNNAL 698

Query: 717 HFTPSGGQIIISTTHTS--NEEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
            FT  G ++ +    T   N ++    +V D+G+G++  +  K  K F Q+ +S   +  
Sbjct: 699 KFTHKG-EVQVIAKLTPINNNQMRFNCQVIDSGIGISAAQQAKLFKSFSQVDSSTTRKYG 757

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           GTGLGL + K +     G   + S   KG+    
Sbjct: 758 GTGLGLAIVKKLCHLMEGDIQVQSKENKGSNFSF 791



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/133 (14%), Positives = 46/133 (34%), Gaps = 7/133 (5%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTWYGKTTLWPI 152
           L  ++ E  K  G    +M+G+  C +    + D N  + I + +K   T   +   +  
Sbjct: 457 LVFLNSEFEKITGYSKEEMLGIN-CSLLQGPNTDKNAIDIITNAIKTLKTQRIEILNYKK 515

Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212
           +GT  +  + ++  P+++  ++ + +   GI            L           +  K 
Sbjct: 516 DGTEFWNSLQIS--PVFNEQQQLTAY--VGIQQDITEQKAANQLLIEAKAAAEQANIAKS 571

Query: 213 GHSSVEKEKYDIF 225
              +    +    
Sbjct: 572 EFLAAMSHEIRTP 584


>gi|304408466|ref|ZP_07390110.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           curdlanolyticus YK9]
 gi|304342551|gb|EFM08401.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           curdlanolyticus YK9]
          Length = 623

 Score =  344 bits (882), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 113/640 (17%), Positives = 222/640 (34%), Gaps = 32/640 (5%)

Query: 177 GFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM 236
           G     ++ +       + L      + + +          +    ++F      P    
Sbjct: 9   GMLSVIVLAIIASLPRRKRLLMHASHRMAGIGSWSYNIEKNQLFGTELFFGLIGLPVPPR 68

Query: 237 KNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS 296
                       H DD +   +    T+ E S         ++              +  
Sbjct: 69  ARMKLEQFLELVHPDDRV-RIEQHRDTNHEGSFSIDFRMIRMDGKVRWMHAQMQAT-SPH 126

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY-ANPSFLLLTKYK 355
           +            +L        +     +D    P  ++    +    N +F  L  Y 
Sbjct: 127 RCVGILQDRTAARNLETEARLAHHHLYSFIDHHLDPIVIWRADGIVMSVNRAFTSLLGYS 186

Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
           + + IE  G   T    P        +       ++T +        ++ +      +  
Sbjct: 187 TYE-IEGKGIADTPFI-PDEHREQMDRYCRQTIENKTAVTFETE--RLKKDGGKLHIL-L 241

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
                            I  +  +     RK++    +L S ++   D IA  NR+G I 
Sbjct: 242 SITPLVGADGRMDSWISILRDCTEQLAANRKLKEAQEELESFVDHNIDAIAFFNRDGKIR 301

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
             N A  ++FG+ ++++   P   +   N  +           +  + T      G  K+
Sbjct: 302 KMNTAFQRMFGWTLDELQAAPVQEYPFSNGRTEAELRERLEEIMSGKVTKNAEFQGRRKD 361

Query: 536 EKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
             +L + +     P  +  ++   D+SE KQ ++ L        +  S      A V+HE
Sbjct: 362 GTVLPVMVSSTPFPDRNGLAVMFKDMSELKQTRDMLGR-----SEMLSVLGQLAAGVAHE 416

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           I+ PLT++ GF+ +++      L N     +   +    + +  IVN++L +SK +    
Sbjct: 417 IKNPLTSLKGFARLLE----PSLQNKEQR-FIGIMKEELDRIELIVNEMLVLSKPQ---- 467

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715
            + FE   + E ++  I L+   A  K I I+  F   +P I  + R +KQ+ +N+L NA
Sbjct: 468 VIMFEERDMSELLNYVIELLGTQAIMKSIEIKKEFEP-VPLIACEDRQLKQVFVNLLKNA 526

Query: 716 IHFTPSGGQIIISTTHTSNEE---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           I   P  G   I  +         + + V D G G+    L +  +PF         + +
Sbjct: 527 IEAMPGDGHGQIRVSLQQAGHSDSIRIEVSDQGQGIAPDRLARLTEPFYTT------KEK 580

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
           GTGLGL +  ++V+ + G  +  S    GT + +  P+  
Sbjct: 581 GTGLGLMMTASIVERHGGTIHFASELGVGTTVTVTLPIQQ 620



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/260 (8%), Positives = 62/260 (23%), Gaps = 21/260 (8%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-----IGDLLKRQ 140
            W   A G +  ++      +G   +++ G  + D       D +           ++ +
Sbjct: 165 IWR--ADGIVMSVNRAFTSLLGYSTYEIEGKGIAD--TPFIPDEHREQMDRYCRQTIENK 220

Query: 141 NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
                +T     +G  L+  I L+  P+   +          I+             K  
Sbjct: 221 TAVTFETERLKKDGGKLH--ILLSITPLVGADGRMD--SWISILRDCTEQLAANRKLKEA 276

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLKTE 257
            ++     +      +       I    +         +    ++  + Y   +   + E
Sbjct: 277 QEELESFVDHNIDAIAFFNRDGKIRKMNTAFQRMFGWTLDELQAAPVQEYPFSNGRTEAE 336

Query: 258 KYPLLT---SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
               L    S + +   +      +              + +  +  +            
Sbjct: 337 LRERLEEIMSGKVTKNAEFQGRRKDGTVLPVMVSSTPFPDRNGLAVMFKDMSELKQTRDM 396

Query: 315 FDEGENLTPETVDKCPIPFF 334
              G +     + +      
Sbjct: 397 L--GRSEMLSVLGQLAAGVA 414


>gi|170079099|ref|YP_001735737.1| two-component hybrid sensor kinase/response regulator [Synechococcus
            sp. PCC 7002]
 gi|169886768|gb|ACB00482.1| two-component hybrid sensor and regulator (His Kinase A domain
            protein) [Synechococcus sp. PCC 7002]
          Length = 1427

 Score =  344 bits (882), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 122/788 (15%), Positives = 262/788 (33%), Gaps = 60/788 (7%)

Query: 66   NYLDSENTFVFDP-IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI 124
              L  E  F+          F   ++  G +   +    +  G    ++    L D+   
Sbjct: 655  MELRQEQDFLETLFDLTPALFM-VLNREGRIIRFNPACEQLTGYQFTEVAHQYLWDLLLW 713

Query: 125  LHIDPNN---HIGDLLKRQNTWYGKTTLWPIEG--TNLYVPIDLAALPIYSRNREF--SG 177
               D          LL+++     +       G   +L     +    +  +        
Sbjct: 714  DRYDVAEIVQEFQRLLQQKKPRTYEVDWRAKSGKVHHLRWSHGV----LLDKQGNVHYVI 769

Query: 178  FRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK 237
              G  +      +   + L + L+ +      + +      + +            +  +
Sbjct: 770  ATGMDMSDRQAFETTLKTLNQELEFRVEQRTRVLENIEQNLRRQLAAVDAAVDAIAILQR 829

Query: 238  NKVSSLTEYYAHKDD-------------VLKTEKYPLLTSEESSLPEQEDFHTINLNQYT 284
             +  S+   +    D              +          E+  LP      +       
Sbjct: 830  EEFISVNPAFLELFDYPHRLSLTGHSWKEVLFAPSEQKRLEKDILPHLNRHKSWQGEAIA 889

Query: 285  KKQYFGTLQNNSKESFEYLS--------HRNHPSLSAYFDEGENLTPETVDKCPIPF--F 334
            ++Q           +                    +    E E L        PIP   +
Sbjct: 890  QRQNGQIFTQEISLTITSDGDYICVCRDITARNRAALKIRETEALLRSQYRNFPIPTYTW 949

Query: 335  VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM--LYRSDRT 392
             +  GN +        L  Y S  +I   G L   L  P  +   A   +   + R    
Sbjct: 950  QHRQGNFY--------LIDYNSAAEIANDGSLQDFLHCPSHAIYGADHAIHQNIRRCFDF 1001

Query: 393  CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
                   L     +   +    F+         +         +  + +  +R ++    
Sbjct: 1002 KTTFEEALQIPSPDDPEAFQRYFLATYIY---IQPDLVMVHTQDLTERKRAERDLQQSQT 1058

Query: 453  QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ-NTPSVMNH 511
             L  +++   + I + +++G  L  N+A++  +G  V +++ K                 
Sbjct: 1059 FLRLVIDNNPNLIFVKDKDGRFLLVNQAMANFYGTTVNELVGKRECDLHPDSEEADCFIQ 1118

Query: 512  YLTEILSLDLRQTLEK----ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQE 567
               ++L       +++      LG+T+  + + L + +              +I++ ++ 
Sbjct: 1119 ADQQVLREQKIVVIDEAKATDFLGATRYFRTVKLPLQLPGDHPQYQVLGVASEITQQRRA 1178

Query: 568  KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
            K +L  A     + +  K+ F+   SHE RTPLT I+G ++ I +     L   R  +Y 
Sbjct: 1179 KRELEKALTQERELNHLKTRFIDTASHEFRTPLTVILGAAQ-ILSAYHDHLPEARRSQYL 1237

Query: 628  NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA-NEKRILI 686
            N I+ S   +  +++DLL +S++E+GK+    + V +     + I+ +++    +    +
Sbjct: 1238 NNIEDSVMRLRQLIDDLLTMSRLEAGKLGCQRQAVDIVTLCRDLIAELKIGIGKQHHFNL 1297

Query: 687  RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
             T+ A   P  L D   ++ I  N+L NA  ++  G  + +    ++   + L + D GV
Sbjct: 1298 ETTGAIAAPLAL-DPNLLQHILNNLLGNACKYSAPGTTVTVQLGSSAEA-LTLTIIDQGV 1355

Query: 747  GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
            G+   +     + F +   S      GTGLGL + K  V  + G+  + S  +KG+   +
Sbjct: 1356 GIPPEDQPHIFESFYRA--SNTQNIPGTGLGLNIVKEYVQLHGGQIELTSQLSKGSQFTV 1413

Query: 807  IFPLYDTS 814
              PL + S
Sbjct: 1414 TIPLTEDS 1421



 Score = 88.5 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 45/419 (10%), Positives = 102/419 (24%), Gaps = 14/419 (3%)

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244
            +         L    D++       +      +                 +  +     
Sbjct: 391 RLQNSAAQRPILLLTDDRQEDIQLAHQCIELGAQDYLLRSLCAGESQTEREILMRSVRYV 450

Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
              A     L+     L +  +    E+     I             L     +    ++
Sbjct: 451 LETAGAKRYLQQRDQQLQSLSQRLKAEKTAKQAIAQQLKLTDGQMKALFEAITDIVFVIN 510

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIP--FFVYSHGNLFYANPSFLLLTKYKSVDDIEI 362
            +          +  N     +D C     F       L       +        + +  
Sbjct: 511 PQTWKIKQVTAPQ-NNHCCGPLDLCQGTYQFLQAHQSRLTPYLHQAIAKGTTPDHEPLSG 569

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM---TFIPFE 419
                     P            +   ++  +  +A   T     +  L           
Sbjct: 570 ESVKYEYSLQPDPHLAPVWFVAKIVAINQQQVVWAAHDVTPFKLSQQKLITDQENLTTII 629

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
           +            +  E    ++ + ++  E   L ++ + T     ++NREG I+  N 
Sbjct: 630 QERTRELKALNATLNTEIQQRKLTEMELRQEQDFLETLFDLTPALFMVLNREGRIIRFNP 689

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQN--TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
           A  +L GY   ++  +     L  +    + +      +L     +T         K  K
Sbjct: 690 ACEQLTGYQFTEVAHQYLWDLLLWDRYDVAEIVQEFQRLLQQKKPRTY--EVDWRAKSGK 747

Query: 538 LLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
           +  LR     L            T  D+S+ +  +  L    +  E     ++  L  +
Sbjct: 748 VHHLRWSHGVLLDKQGNVHYVIATGMDMSDRQAFETTLKTLNQELEFRVEQRTRVLENI 806


>gi|117924517|ref|YP_865134.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117608273|gb|ABK43728.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 803

 Score =  344 bits (882), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 106/498 (21%), Positives = 196/498 (39%), Gaps = 35/498 (7%)

Query: 347 SFLLLTKYKSVDDIEIAGGLSTL-----------LDAPKLSDNNAIKPVMLYRSDRTCIA 395
           +   L K    + IE   G   L           L    +   +  +   +         
Sbjct: 43  ALRRLLKNTHAELIEAESGNEALGLMLEHELALMLLDVDMPGMDGFEVSRMASGLDRTSN 102

Query: 396 ASARLHTI-------QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN--KRK 446
               L T        +     + A+ +I     ++         +   +        ++ 
Sbjct: 103 VPIILITAAYKDYSHRIKGYQAGAIDYIEKPIDDRILNAKVAIFLNLYNAHRESEQLRQD 162

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR--KPFTVFLEQN 504
           + +   +L   LE  ++G+   N     +  +     + GY   ++ +    +   +  +
Sbjct: 163 LTLNQERLELALEGANEGLWDWNILSNQVYYSPRWITMLGYATNEVNQDFSTWKTLIHPD 222

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR-----IIIKKLPFSSCYSLTMH 559
                   L    +    +         TK+     +      +                
Sbjct: 223 DFESALACLERHFTT-PEEPYRAEFRMRTKQGGWCWILARGKVVARTADGQPHRMVGAHQ 281

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           DIS+ KQ +  L  AK  AE+ +  KS FLA +SHEIRTP+  I+G  E++ N    P  
Sbjct: 282 DISQRKQLEADLLAAKTEAEQANQAKSRFLANMSHEIRTPMNTILGMGEILLN---APNL 338

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
            P+   Y +   R+G+ +L ++ND+LD+SKIE+G+++L     +L + +   I++++  A
Sbjct: 339 TPKQHRYLSISQRAGDTLLGLINDILDLSKIEAGELHLEHTLFALHDELKSLITMLRPMA 398

Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738
            +K + ++      +P  +  D +  +QI LN+LSNA+ FT  G  I +         + 
Sbjct: 399 RDKGLSMQCVIDPQLPTHVHGDPQRFRQIVLNLLSNALKFTDQGS-ITLHAKPIETGRLQ 457

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
             V DTG+GM    + K  +PF Q   +   R  GTGLGL + + +V    G+ Y  S  
Sbjct: 458 FTVSDTGIGMPEQVITKIFRPFVQAEANTTRRFGGTGLGLSICRQLVTMMHGEIYANSQV 517

Query: 799 AKGT--LIEIIFPLYDTS 814
            +G+  + EI  P  ++ 
Sbjct: 518 GEGSQFIFEIELPAANSE 535


>gi|326797637|ref|YP_004315456.1| multi-sensor hybrid histidine kinase [Sphingobacterium sp. 21]
 gi|326548401|gb|ADZ76786.1| multi-sensor hybrid histidine kinase [Sphingobacterium sp. 21]
          Length = 1203

 Score =  344 bits (882), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 161/777 (20%), Positives = 292/777 (37%), Gaps = 68/777 (8%)

Query: 89  IDAHGYLKEISEELPKT-------------IGNYAFKMIGMRLCDV---SDILHIDPNNH 132
           +D    + E S E  +              +  +A ++ G++  ++   +    I     
Sbjct: 193 LDRTKRMLEKSNEAARIGQWDINFGENSIHLSKFAGEIFGLKENELSVNAFCGLIKEKER 252

Query: 133 IGDLLK------RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHV 186
              LL+      R            +    L   I    +P+Y +  +  G   +G++  
Sbjct: 253 FQYLLEKLKQSNRDQEGRMDEVFSILSSRRLEGWIRFIGIPLY-KGGQCIGA--YGLIQD 309

Query: 187 NRVDNDPR-ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK-NKVSSLT 244
                +    L K   +    L     G      +  +I   +     L  + N+V  +T
Sbjct: 310 IHEQKNTECNLIKERQRLKYVLQGANLGTWEWNVQTDEILFNEQWAMLLGYELNEVQPIT 369

Query: 245 EY------YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE 298
                   Y    D  K       + E      +        +          L  + K 
Sbjct: 370 GSAFQRFIYPGDFDKAKNAMESYFSGETDIYQCEMRMIHKAGHTVWMLVQGKILSWDDKG 429

Query: 299 SFEY-----LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTK 353
           +  +     L +     L       E+     +   P   F+ S          FL    
Sbjct: 430 APLWMYGTHLENTKEKQLQENLRRSESYAHSLITSIPDSMFILSKDG------EFLDYKS 483

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
           ++     +    L         +    +    + +S RT          I   +E     
Sbjct: 484 HEKDLYTKPNLFLGKNFKDIFPAKLGLLIEEKIEQSIRTDSLVEFTYSLILHEQEKYYRA 543

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-G 472
             +PF       E      +  +D    I +R++     +  SI++ +  GIA++  + G
Sbjct: 544 RVVPF-------EGDKIIVLCRDDTVNFIAERELRALNAKFKSIVDNSPIGIALVEYQTG 596

Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
           I    N A+    GY  +++LR  F+    +         L ++         EK  L  
Sbjct: 597 IFQEVNPAIPMFTGYTRDELLRLSFSDITPRAYHEADKLQLKQLHKNGRFDNYEKEYL-- 654

Query: 533 TKEEKLLSLRIIIKKLPFSSC---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
            K+ K + + +        S        + DIS+ K+++  L  AK+ AE  ++ KS+FL
Sbjct: 655 RKDGKRVWVSVTGVAFTDVSGEKKILTIVQDISQQKEQQRALKAAKEQAEIANNAKSEFL 714

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
           A +SHE+RTPL AIIGF++++         +    EY   + +SG  +LD++NDLLD+SK
Sbjct: 715 ANMSHEMRTPLNAIIGFTDLLLKSPL----SEAQKEYMRAVFQSGQSLLDLINDLLDLSK 770

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIA 708
           IESGK++L FE V L +   + + +++  AN+K +      +  +P  +L+D + ++Q+ 
Sbjct: 771 IESGKLDLVFESVDLIKLAKQVVEILKYQANKKGLDFNLILSPELPPLVLSDGQRLRQVL 830

Query: 709 LNILSNAIHFTPSGGQ---IIISTTHTSNEEV-ILRVRDTGVGMTNYELEKAMKPFGQIP 764
            N+LSNA+ FT  G     I +    ++ E +    V DTG+G+     EK  + F Q  
Sbjct: 831 FNLLSNALKFTERGSVDLDIQVEQHLSAKEVIIRFSVTDTGIGIAEENREKIFEAFVQEN 890

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI--IFPLYDTSHPHDC 819
           +S   R  GTGLGL ++  ++     +  + S    G+      +  L DT  P + 
Sbjct: 891 SSIIKRFGGTGLGLTISNRILSLMGSQLKLRSETGTGSTFYFDLLLTLVDTDQPSEA 947


>gi|325923655|ref|ZP_08185280.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas gardneri ATCC
           19865]
 gi|325545854|gb|EGD17083.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas gardneri ATCC
           19865]
          Length = 664

 Score =  344 bits (882), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 98/522 (18%), Positives = 203/522 (38%), Gaps = 42/522 (8%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIPF----FVYSHGN-----LFYANPSFLLLTKYKSVDD 359
           P+  A       +  E        F     V+         +   N +F   T   +  +
Sbjct: 6   PAAIAEPFLDPAMYHEIFHNVDAGFCVIDMVFDGDKAVDYVIRSTNGAFERYTGLTNAVN 65

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
           + + G L+         +                I    +   ++          +    
Sbjct: 66  VSVRGMLAE-------HEQEWFDRYGHVARTGNRIHFEMQAKALRR--------WYSVDA 110

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
                P+      +  +  + +  +R++     +  ++ +     + +++ +G++   N 
Sbjct: 111 FRVGQPQQARVAVLFMDITERKRVERELAESEARFSALADGLPMPVWVLDAQGVVRFVNS 170

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
           A  + FG  +       ++  L  +  S+         SL+ ++ L  +      + +  
Sbjct: 171 AYGEFFGIDISSGTVSAWSELLHPDDLSIFQ--FELAASLEEQRALHALVRARRHDGQWR 228

Query: 540 SLRIIIKKLPFSSCYSLTMH----DISEWKQEK-------NKLSHAKKIAEKESSHKSDF 588
            + +       +    + +     D++E ++ +            A+  AE  +  K +F
Sbjct: 229 WIEMAATPRYSADGRFIGLAGSSPDVTEQREIELAREQLLESERTARNEAESMARFKDEF 288

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
           LA +SHE+RTPLT I+G+SE++  +     G P Y    + I  S      +++D+LD+S
Sbjct: 289 LATLSHELRTPLTTILGWSELLLQRV--EEGQPTYKG-LSVIASSARAQKRLISDMLDLS 345

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIA 708
            +  GK+ L  E + L E V EA++  +L A  K  ++     +    +L D   ++Q+ 
Sbjct: 346 SMLLGKVQLEVESLDLAEQVHEALTTQELAAEGKDQILEVHVPDTPCLVLGDATRLQQVL 405

Query: 709 LNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
            N+LSNAI FTP+ G+I ++     +  +++ VRD+G G+    L      F Q   +  
Sbjct: 406 WNLLSNAIKFTPAHGRIDVTIE-RDDGHLLVSVRDSGDGIAAEFLPHLFGRFRQADGTTT 464

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFP 809
            +  G GLGL + + +V+ + G+    S    KG    +  P
Sbjct: 465 RQHGGLGLGLAIVQQLVEMHGGQVGATSGGRGKGATFTVRLP 506



 Score = 73.1 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 48/462 (10%), Positives = 120/462 (25%), Gaps = 48/462 (10%)

Query: 54  FTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM 113
           F D  +         +SE  F        +   W +DA G ++ ++    +  G      
Sbjct: 125 FMDITERKRVERELAESEARFSALADGLPMP-VWVLDAQGVVRFVNSAYGEFFGIDISSG 183

Query: 114 IGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172
                 ++     +      +   L+ Q   +        +G   +  I++AA P YS +
Sbjct: 184 TVSAWSELLHPDDLSIFQFELAASLEEQRALHALVRARRHDG--QWRWIEMAATPRYSAD 241

Query: 173 REFSGFRGFG-IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231
             F G  G    V   R     R      ++   +  E        E         ++P 
Sbjct: 242 GRFIGLAGSSPDVTEQREIELAREQLLESERTARNEAESMARFKD-EFLATLSHELRTPL 300

Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291
             +   +++               +       +++  + +  D  ++ L +   +     
Sbjct: 301 TTILGWSELLLQRVEEGQPTYKGLSVIASSARAQKRLISDMLDLSSMLLGKVQLEVESLD 360

Query: 292 LQN---NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSF 348
           L      +  + E  +      L  +  +   L      +     +      + +  P+ 
Sbjct: 361 LAEQVHEALTTQELAAEGKDQILEVHVPDTPCLVLGDATRLQQVLWNLLSNAIKF-TPAH 419

Query: 349 LLLTKYKSVDDI-------EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401
             +      DD        +   G++                    +     +  +    
Sbjct: 420 GRIDVTIERDDGHLLVSVRDSGDGIAAEFLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQ 479

Query: 402 TIQWNREN-----------SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR----K 446
            ++ +              +     +P    +Q      +             +     +
Sbjct: 480 LVEMHGGQVGATSGGRGKGATFTVRLPEHIPDQAKRPRRELRRRLMSEQIIEARALNGLR 539

Query: 447 MEIEVMQ------LCSILE----------ATSDGIAIINREG 472
           +     Q      L  +LE          + +D +A+I+  G
Sbjct: 540 LLAVEDQPDMLDYLRRLLEEQGAEVVTAGSATDALALIDHRG 581



 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/192 (11%), Positives = 52/192 (27%), Gaps = 13/192 (6%)

Query: 277 TINLNQYTKKQYFGTLQNNSKESFEYL--SHRNHPSLSAYFDEGENLTPETVDKCPIPFF 334
                +         +    +     L         +     E E       D  P+P +
Sbjct: 98  QAKALRRWYSVDAFRVGQPQQARVAVLFMDITERKRVERELAESEARFSALADGLPMPVW 157

Query: 335 VYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393
           V    G + + N ++           I+I+ G  +        D+ +I    L  S    
Sbjct: 158 VLDAQGVVRFVNSAYGEFFG------IDISSGTVSAWSELLHPDDLSIFQFELAASLEEQ 211

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI---NKRKMEIE 450
            A  A L   + +      +      + +     +   G  P+  + R     + ++   
Sbjct: 212 RALHA-LVRARRHDGQWRWIEMAATPRYSADGRFIGLAGSSPDVTEQREIELAREQLLES 270

Query: 451 VMQLCSILEATS 462
                +  E+ +
Sbjct: 271 ERTARNEAESMA 282


>gi|189424608|ref|YP_001951785.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189420867|gb|ACD95265.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 1199

 Score =  344 bits (882), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 101/486 (20%), Positives = 186/486 (38%), Gaps = 35/486 (7%)

Query: 341 LFYANPSFLLLTKYKS---VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397
           L   +     +    +   +  I +A   +  L    +      + +         I   
Sbjct: 450 LLQTSQQVSRVLGVIAFVLLLAIALANYFANYLARVFVRLEENTRSLSQRIMAGDAIVWP 509

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK--MEIEVMQLC 455
           A              +T    + A        +      +++ R+ +R   +     Q+ 
Sbjct: 510 AASVR------EVEGLTANFQQMAVSLQHQSLELQSLNGELEQRVQERTSDLRNAEAQMR 563

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF--LEQNTPSVMNHYL 513
           +++    D I + + +G  L  N    +LFG        K             +   +  
Sbjct: 564 TLINLIPDIICLKDGKGRWLIANNFDLELFGLSGVAYQGKTDMELASFSPFYQNAFANCE 623

Query: 514 TEILSLDLRQTLEK-ITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEK 568
                      L +   +    +   ++  +I   +           +   DI+  K  +
Sbjct: 624 RSDELAWQAGGLNRYEEIIPRPDGSSITFDVIKLPVFEPDGSRKALVVVGRDITARKLTE 683

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
             L          +  K  FLA +SHEIRTP+  +IG + +++        NP   +Y  
Sbjct: 684 QALQD-------ATEAKMQFLANMSHEIRTPMNGVIGMTGLLQESGL----NPEQQQYVE 732

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I  SG+L+L I+ND+LD SK+E+G++ L   P  +   ++E I LV   A  K + +  
Sbjct: 733 VIRASGDLLLSIINDILDFSKMEAGRLELEQTPFDVSMILNEVIDLVSTQAQSKGLALER 792

Query: 689 SFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRD 743
                 P  +  D+  ++QI LN+L NAI FT SG  + +       ++    ++ +VRD
Sbjct: 793 HLELAQPCYLKGDVTRLRQILLNLLVNAIKFTESGS-VTLQARVEPGQDRRSMLLCQVRD 851

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TG+G++  +LE    PF Q   S   +  GTGLGL +++ +     G+  + S   +GT 
Sbjct: 852 TGIGISEQQLETLFDPFTQADASITRKYGGTGLGLAISRHLTQLMEGEIGVDSHQGQGTT 911

Query: 804 IEIIFP 809
             +  P
Sbjct: 912 FRLSIP 917


>gi|284041098|ref|YP_003391028.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
 gi|283820391|gb|ADB42229.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
          Length = 952

 Score =  344 bits (882), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 105/562 (18%), Positives = 209/562 (37%), Gaps = 24/562 (4%)

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ---NNSKESFEYLSHRNHPSLSAYFDE 317
           +++  + S   +      N       Q    ++      +         +        + 
Sbjct: 127 MMSERQDSTYIEFPVLAKNGRTVWIGQTVRLIETHGQIEELVAVARDISDRKLAEMELET 186

Query: 318 GENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
            +      +        V    G +  AN  F  + +     D     G        ++ 
Sbjct: 187 TQTRLSTLITNLQSGVMVEDERGRVILANALFCDIFQLPLTPD--QLVGYDCTEARQQVK 244

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHT-IQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
              A     + R +       A +   I       L + +IP        + M       
Sbjct: 245 QLFAQPEQFISRMNELLTGRQACVGEEISMANGRILELDYIPI--FLDANQYMGHLWKYT 302

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
           +  +  + +  +     +   I+     G+  ++ + II+ +     ++ GY   +++ K
Sbjct: 303 DVTEKYMARELIRRSEEKYRGIMNNMELGLFEVDNDQIIVRSYERCCQMLGYSEAEMVGK 362

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555
                L       +     +     +  +       + K+   + + +    +       
Sbjct: 363 NAIDLLVPAEFVGIVERQQQERQQGIAGSY--ELQLTKKDGSRIWVLVSGVPIQDEHGTV 420

Query: 556 L----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
           +      +D++E KQ +++L+ AK+ AE+    +  F A +SHEIRTPL AIIG S ++ 
Sbjct: 421 VGSMSIHYDMNERKQLEHELARAKQYAEEAQQAEKQFFANMSHEIRTPLNAIIGMSHLLY 480

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
           + +     + +  EY N +  S + +  +++DLLD++KIE+G + +H  P  L   +   
Sbjct: 481 DTQ----PSAQQREYINILKTSADFLHSLISDLLDMTKIEAGHIEVHARPFDLAGLLRST 536

Query: 672 ISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIIST 729
             + ++    + I I       I    + D   + QI +N++ NA  FT  G  QII   
Sbjct: 537 QKVFEMKLQGRPISIDVLLDTRITNAFVGDDVMLNQIMMNLVGNAEKFTEEGQIQIIGKV 596

Query: 730 THTSNE--EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
                +   +   V DTGVG+   ++    K F Q+ NSQ  + +GTGLGL + K +V+ 
Sbjct: 597 KKEEGDKTWIEFTVSDTGVGIPADKIGLVFKKFKQV-NSQGYKHKGTGLGLAITKELVEL 655

Query: 788 NMGKFYIFSTPAKGTLIEIIFP 809
             G   + S    G+    + P
Sbjct: 656 QGGTISVKSQEGVGSSFTFVIP 677



 Score = 80.8 bits (198), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 48/136 (35%), Gaps = 4/136 (2%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           ++     +   ++E+  D I  ++  G     +  V KL GY  E+ L   FT  ++   
Sbjct: 57  ELRESEQRYRQLIESVQDIIYKVSPNGFFTFVSPVVEKLLGYTEEEFLNSHFTSVVKPGY 116

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY---SLTMHDIS 562
             V+  +   ++S     T         K  + + +   ++ +              DIS
Sbjct: 117 RKVLIDFYRTMMSERQDSTY-IEFPVLAKNGRTVWIGQTVRLIETHGQIEELVAVARDIS 175

Query: 563 EWKQEKNKLSHAKKIA 578
           + K  + +L   +   
Sbjct: 176 DRKLAEMELETTQTRL 191



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/383 (7%), Positives = 100/383 (26%), Gaps = 27/383 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL--KRQNTW 143
            + +  +G+   +S  + K +G    + +      V    +          +  +RQ++ 
Sbjct: 76  IYKVSPNGFFTFVSPVVEKLLGYTEEEFLNSHFTSVVKPGYRKVLIDFYRTMMSERQDST 135

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR-ALGKRLDK 202
           Y +  +    G  +++   +  +  + +  E        +             L     +
Sbjct: 136 YIEFPVLAKNGRTVWIGQTVRLIETHGQIEEL-----VAVARDISDRKLAEMELETTQTR 190

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQ---SPPPHLRMKNKVSSLTEYYAH--------KD 251
             + +  ++ G    ++    I +              +++       A         + 
Sbjct: 191 LSTLITNLQSGVMVEDERGRVILANALFCDIFQLPLTPDQLVGYDCTEARQQVKQLFAQP 250

Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
           +   +    LLT  ++ + E+       + +      F          ++Y         
Sbjct: 251 EQFISRMNELLTGRQACVGEEISMANGRILELDYIPIFLDANQYMGHLWKYTDVTEKYMA 310

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYSHGNLFYAN-PSFLLLTKYKSVDDIEIAGGLSTLL 370
                  E      ++   +  F   +  +   +      +  Y   + +          
Sbjct: 311 RELIRRSEEKYRGIMNNMELGLFEVDNDQIIVRSYERCCQMLGYSEAEMVGKNAI----- 365

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
               L     +  V   + +R    A +    +     + + +        ++    +  
Sbjct: 366 --DLLVPAEFVGIVERQQQERQQGIAGSYELQLTKKDGSRIWVLVSGVPIQDEHGTVVGS 423

Query: 431 NGIEPEDVDTRINKRKMEIEVMQ 453
             I  +  + +  + ++      
Sbjct: 424 MSIHYDMNERKQLEHELARAKQY 446


>gi|262164518|ref|ZP_06032256.1| hypothetical protein VMA_000961 [Vibrio mimicus VM223]
 gi|262026898|gb|EEY45565.1| hypothetical protein VMA_000961 [Vibrio mimicus VM223]
          Length = 1053

 Score =  344 bits (882), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 115/423 (27%), Positives = 199/423 (47%), Gaps = 19/423 (4%)

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR--KMEIEVMQLCSILEATSDGIA 466
             L +     E   +  E           ++  I KR  ++ +      +I+E     +A
Sbjct: 115 RELWLEKGRDELLEELHETNRALAQHQAGLEEEIAKRTKELAVSEELSRTIIEGAPSSVA 174

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
           II+ +G+IL  N+     +GY  ++ L +P    L+   P  +   LT  L +D RQ L 
Sbjct: 175 IIDSQGLILLWNKTAITTYGYTADEALGQPLLTLLKMALPPELAAALTLPLRVDQRQLLN 234

Query: 527 K---ITLGSTKEEKLLSLR--IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE 581
           +        T++  L+ +   + I +L      ++ + D++  K  + +L+ AK  AE  
Sbjct: 235 EAFYEAETYTRDGTLVPIDLGVSIFELNGQCQAAMFLRDVTARKAAEQELNEAKAKAEDA 294

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
              KS FLA +SHEIRTP+ AIIG S +       P    +  +Y + I  S  L+L I+
Sbjct: 295 VEVKSMFLANMSHEIRTPMNAIIGMSHLALKTELTP----KQRDYVSKIHSSATLLLGII 350

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILAD 700
           ND+LD SKIE+GK+++     SL+E +     +    A +K + +  S    IP  ++ D
Sbjct: 351 NDILDFSKIEAGKLSIEHIEFSLEEVLHNVSMVTGQKAFDKGLELLFSLPREIPHKLIGD 410

Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDTGVGMTNYELEKA 756
              + Q+ +N+++NA+ FT  G +I +S      +    +++  V DTG+GMT  +    
Sbjct: 411 PLRIGQVVINLVNNAVKFTEQG-EISVSVQVGERQPGRIKLLFHVSDTGIGMTEKQTRNL 469

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI--IFPLYDTS 814
            + F Q   S   +  GTGLGL +++ +V+   G+  + S P  G+       F + +  
Sbjct: 470 FQAFTQADGSTTRKYGGTGLGLSISRRLVELMEGEISVTSQPDMGSCFTFNAWFDVDENQ 529

Query: 815 HPH 817
            PH
Sbjct: 530 APH 532



 Score = 37.7 bits (86), Expect = 7.7,   Method: Composition-based stats.
 Identities = 19/149 (12%), Positives = 46/149 (30%), Gaps = 18/149 (12%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRL---------CDVSDILHIDPNNHIGDLLKR 139
           ID+ G +   ++    T G  A + +G  L          +++  L + P       L  
Sbjct: 176 IDSQGLILLWNKTAITTYGYTADEALGQPLLTLLKMALPPELAAALTL-PLRVDQRQLLN 234

Query: 140 QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199
           +  +  +T  +  +GT + + + ++   I+  N +    +    +               
Sbjct: 235 EAFYEAET--YTRDGTLVPIDLGVS---IFELNGQ---CQAAMFLRDVTARKAAEQELNE 286

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228
              K     E+K    +    +       
Sbjct: 287 AKAKAEDAVEVKSMFLANMSHEIRTPMNA 315


>gi|117620646|ref|YP_855451.1| virulence sensor protein BvgS, putative [Aeromonas hydrophila subsp.
            hydrophila ATCC 7966]
 gi|117562053|gb|ABK39001.1| virulence sensor protein BvgS, putative [Aeromonas hydrophila subsp.
            hydrophila ATCC 7966]
          Length = 1425

 Score =  344 bits (882), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 97/519 (18%), Positives = 196/519 (37%), Gaps = 25/519 (4%)

Query: 304  SHRNHPSLSAYFDEGENLTPETVDKCP-IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEI 362
                        +E        ++  P +         +   N ++        + ++  
Sbjct: 547  QIVQRKLAEHKLNEQLTFVQTLLNSLPNMVVLRDREQRITLCNQAYRDAF----IGELTQ 602

Query: 363  AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
              G   L   P       ++           +         +        + +      +
Sbjct: 603  DDG-DDLDRMPARERERVLREESGVWQSGEQLEG---AGNSRRQDGAMFHVIYTKRPYRS 658

Query: 423  QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI----INR-EGIILST 477
               + +    +  +    +  + +      +L  I ++   GI      +   +G  L  
Sbjct: 659  PKGDMLGVLTVLTDVTRIKEAEARARKAETRLTQITDSMP-GIVYQYLWLGPGKGRFLYA 717

Query: 478  NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR-QTLEKITLGSTKEE 536
            ++  S++ G   ++IL       +   T   +  +++++ +       L+        E 
Sbjct: 718  SQGASEILGASRQEILSAESGGEVFGFTEEALQDFVSKVANHAETLAPLDLEVRVERPEG 777

Query: 537  -KLLSLRIIIKKLPFSSCYS-LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
             + L +R                + DI+  K +++ L  A+  AE+    +S FLA +SH
Sbjct: 778  ARYLQVRGSFVPQEEGHLILNGVIQDITALKHQEHDLREARAYAEQAMQVRSRFLATMSH 837

Query: 595  EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
            E+RTP++ + G  E+++        N         +  S N +L +VND+LD SKIE+G+
Sbjct: 838  ELRTPISGMHGMLELLQMSEL----NDDQRYLLRNVVTSTNNLLYLVNDVLDFSKIEAGQ 893

Query: 655  MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILS 713
            + LH++   L   + + I      A+ K + +   +A  +P +   D   V Q+  N+L+
Sbjct: 894  LQLHYQDCRLASVICDVIRGHATLAHGKGLKVTLEWAPEVPDQARIDAVRVGQVLSNLLN 953

Query: 714  NAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
            NA+ FT  G +I I  +      + + V DTG+G+   + ++   PF Q+ +    R  G
Sbjct: 954  NAVKFTERG-EIRIQVSFEKE-RLAIAVSDTGIGIAEDKQDRLFTPFEQVESDITRRFGG 1011

Query: 774  TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
            TGLGL +   +     G   + S P  GT +   FPL +
Sbjct: 1012 TGLGLAICHQLAQKMGGTLVLESKPGHGTRLTFDFPLAE 1050



 Score = 57.7 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 14/152 (9%), Positives = 50/152 (32%), Gaps = 7/152 (4%)

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
           +  + V  ++ + K+  ++  + ++L +  + + + +RE  I   N+A    F   +   
Sbjct: 544 LRRQIVQRKLAEHKLNEQLTFVQTLLNSLPNMVVLRDREQRITLCNQAYRDAFIGELTQD 603

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP--- 549
                   +       +    + +     +  LE       ++  +  +    +      
Sbjct: 604 DGDDLDR-MPARERERVLREESGVWQSGEQ--LEGAGNSRRQDGAMFHVIYTKRPYRSPK 660

Query: 550 -FSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
                    + D++  K+ + +   A+    +
Sbjct: 661 GDMLGVLTVLTDVTRIKEAEARARKAETRLTQ 692



 Score = 38.1 bits (87), Expect = 6.8,   Method: Composition-based stats.
 Identities = 29/307 (9%), Positives = 73/307 (23%), Gaps = 39/307 (12%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD-------LLKRQNT 142
           D    +   ++             IG    D  D L   P             + +    
Sbjct: 580 DREQRITLCNQAY-------RDAFIGELTQDDGDDLDRMPARERERVLREESGVWQSGEQ 632

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
             G       +G   +V       P  S   +  G     ++       +  A  ++ + 
Sbjct: 633 LEGAGNSRRQDGAMFHVIYT--KRPYRSPKGDMLGV--LTVLTDVTRIKEAEARARKAET 688

Query: 203 KFSHLHEIKK----GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY-----YAHKDDV 253
           + + + +        +  +   K            +   ++   L+       +   ++ 
Sbjct: 689 RLTQITDSMPGIVYQYLWLGPGKGRFLYASQGASEILGASRQEILSAESGGEVFGFTEEA 748

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
           L+     +    E+  P   +            Q  G+     +            +   
Sbjct: 749 LQDFVSKVANHAETLAPLDLEVRVERPEGARYLQVRGSFVPQEEGHLILNGVIQDITALK 808

Query: 314 YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
           + +          ++                   FL    ++    I    G+  LL   
Sbjct: 809 HQEHDLREARAYAEQA------------MQVRSRFLATMSHELRTPISGMHGMLELLQMS 856

Query: 374 KLSDNNA 380
           +L+D+  
Sbjct: 857 ELNDDQR 863


>gi|108761684|ref|YP_628477.1| sensory box histidine kinase/response regulator [Myxococcus xanthus
           DK 1622]
 gi|108465564|gb|ABF90749.1| sensory box histidine kinase/response regulator [Myxococcus xanthus
           DK 1622]
          Length = 967

 Score =  344 bits (882), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 101/808 (12%), Positives = 238/808 (29%), Gaps = 108/808 (13%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNT--W 143
            +  D  G    ++       G    + +G    D       + +      L        
Sbjct: 43  VFQTDLAGTWTFLNPAWTDITGFSVEESLGRSFSDFLHPDDRERDPEPLQKLFAGEVEFV 102

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +      +G+  Y  +++ A  ++  +    G  G   ++             R ++ 
Sbjct: 103 RHEMRYLTRDGS--YRWVEVFARLMHDDDGGILGTAG--TLNDFTERKAADGALARRERY 158

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
            + L ++++   + +          +P  H    ++V     + A    +L +++     
Sbjct: 159 LTALVDMQQRLLATQDGGDLYGPALAPLGHASGASRVYVFELHRAQDGAILSSQRAEWCA 218

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFG-----TLQNNSKESFEYLSHRNHPSLSAYFDEG 318
                  +  D   + +    ++          ++               P         
Sbjct: 219 PGVKPEIDNPDLQNVPMEPALRRWTETLSRGDVIEGLVASFPASERELLDPQGILSLLVL 278

Query: 319 ENLTPETV---------------DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIE-- 361
                  +               D+  +     + G +  A          +  +     
Sbjct: 279 PLRVRGVLTGFVGFDNTSEARRWDRLEVDLLSAAAGAISMALERRESERALRERERRFRQ 338

Query: 362 -IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW--------------- 405
                   L    + +         +  +       +       W               
Sbjct: 339 LAENASDVLYVYRREAPRGFAYVSRVAHTKLGYGPVAHYADAELWYRRVHEEDRALMEQL 398

Query: 406 ------------------NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
                                 +L +  +     +     +   G+  +  + R  +  +
Sbjct: 399 LEAPEPFQGAPVVVRFLHPDGRTLWLEHVVAPVTDASGRMVAVEGLARDITERRQAEEAL 458

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV-EDILRKPFTVFLEQNTP 506
            +      ++LE   D  A I R+  I+  N A+    G+   + ++ +P T F+     
Sbjct: 459 RLSEASFRALLEGVPDA-AAIERDNQIVYANAALVATLGFERADQLVGRPLTEFVRDMRS 517

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQ 566
                            T E+  +      ++  +  +  +            D++E +Q
Sbjct: 518 PDAVRA--------GALTGERRLVRRDGRTRVAEVVSLPLRFDGQPAVVSIARDVTEQRQ 569

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ------------- 613
            + +L+ A ++A   +       A ++HEI  PL  ++     + ++             
Sbjct: 570 LQARLTLADRLASVGT-----LAAGIAHEINNPLAFVLSNLGFLSDEFSRSLPPGDGAAA 624

Query: 614 ----RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
                 G      + E           V  IV  L   S+ +  +++    P+ +   + 
Sbjct: 625 LQARLKGEPDLGEWQEVLQEACEGAERVRQIVRQLKTFSRPDEERVS----PLDVHAVLE 680

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG----QI 725
               +        R  +R  +  +IP ++A+   + Q+ LN++ NA    P G     +I
Sbjct: 681 SVAMMAANEI-RHRAQLRRDY-GDIPPVMANEGKLSQVFLNLVVNAAQAIPEGAAHRHEI 738

Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
            ++T       V++ V DTGVG+    +++   PF          G GTGLGL +  +++
Sbjct: 739 RLATRVDGAGRVVVEVADTGVGIAREVIDRIFDPFFTTKP----VGVGTGLGLSICHSII 794

Query: 786 DANMGKFYIFSTPAKGTLIEIIFPLYDT 813
               G   + S P +GTL  ++ P  +T
Sbjct: 795 SGLGGDITVDSEPERGTLFRVVLPTPET 822



 Score = 78.9 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 19/145 (13%), Positives = 55/145 (37%), Gaps = 5/145 (3%)

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
             +   ++++  + +   +  G     N A + + G+ VE+ L + F+ FL  +      
Sbjct: 29  EHRYRGVIDSLREVVFQTDLAGTWTFLNPAWTDITGFSVEESLGRSFSDFLHPDDRERDP 88

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQ 566
             L ++ + ++ + +       T++     + +  + +          + T++D +E K 
Sbjct: 89  EPLQKLFAGEV-EFVRHEMRYLTRDGSYRWVEVFARLMHDDDGGILGTAGTLNDFTERKA 147

Query: 567 EKNKLSHAKKIAEKESSHKSDFLAR 591
               L+  ++        +   LA 
Sbjct: 148 ADGALARRERYLTALVDMQQRLLAT 172


>gi|83814352|ref|YP_446607.1| two-component sensor histidine kinase [Salinibacter ruber DSM
           13855]
 gi|83755746|gb|ABC43859.1| two-component sensor histidine kinase [Salinibacter ruber DSM
           13855]
          Length = 959

 Score =  343 bits (881), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 134/753 (17%), Positives = 257/753 (34%), Gaps = 43/753 (5%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ-NTWYG 145
           + +D  G  +  ++ + +T G    + +G  +  +   +  +        ++R   T  G
Sbjct: 225 FALDPTGQFQWWNDRVLETTGLS-DEDVG-SVDALDHFVPAEREKQAKQAIRRVLQTGSG 282

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +  +  +    + VP +    P+ +   E    +   +              +  +++F 
Sbjct: 283 QVEVPLVADDGVAVPYEFVGNPVENLEGE---RQIVCVGRNVAERKRRERELRESERRFQ 339

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL-----TEYYAHKDDVLKTEKYP 260
            +       + V                     +   L        +   ++     +  
Sbjct: 340 AMLNDPNILAGVLSPDGTFQKVNDTALGYIEATRADVLGRPFWETPWWETENRSAVREKV 399

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG-- 318
              +E   +  + +  T +    T       +     E           +     +E   
Sbjct: 400 ERVAEGEYVRFEAEHVTPDGEARTVTGIMRPVTGEEGEVVSIFVTARDITERKRREEALQ 459

Query: 319 --ENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
             E      ++  P   F++        A    L        D     GG   +  A   
Sbjct: 460 VAEGRYRALIENFPGGVFLFDEDLQYTLAGGRELRDAGLSPSDV--EGGGPHDIFPAAL- 516

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
                +        +    A    +     +               ++    +    +  
Sbjct: 517 --AEELDMYFRRALNGEKNAFEQTM-----DGRRYF---NRTLPVRDESGTVIAGMAVAQ 566

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED-ILR 494
           +  + R  K K+E +        E  + G    + +   L+      ++ G      +  
Sbjct: 567 DITEERRRKEKLERKNDLFQRAQEIANVGGWEYDLDTGALTLTDQAYRIHGVSPGAKMTL 626

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-C 553
           +        N                +   +E   +    EEK +  R   ++    +  
Sbjct: 627 ERSHGLYHPNDRWEAEEAFRRAAEDGVPYDVEARLITDAGEEKWIRTRGAPQQDDGRTVR 686

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKE-------SSHKSDFLARVSHEIRTPLTAIIGF 606
              T+ DI++ K+ +  L  AK  AE         S  KS FLA +SHEIRTPLT+IIGF
Sbjct: 687 VRGTIQDITDQKEREQALRTAKADAEAARQEAEEASRLKSAFLANISHEIRTPLTSIIGF 746

Query: 607 SEVIKNQRFG-PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
           +E+I ++     L +     YA  I+RSG  +L+ +  +L++SK++SG+M L   PV L+
Sbjct: 747 AELIGSEAGALDLSDSPLPGYATMIERSGKRLLETLEGVLNLSKLQSGQMKLETAPVDLN 806

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725
           E +  A+  ++  A EK +  R            D   ++ +  N++SNAI +T  GG+I
Sbjct: 807 EQIRWAVQELRPKAEEKGV--RLQLETGCAVAEGDEGGIQIVIRNLVSNAIKYTEQGGRI 864

Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
            +  +  + +  +L V DTG+GM     E   +PF Q         EGTG+GL +    V
Sbjct: 865 WVR-SFQNEDRAVLEVEDTGIGMDPAVAESLFEPFRQASEGLNREYEGTGVGLAVTNKAV 923

Query: 786 DANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
               G   + +   +GT   I  P  +  HP D
Sbjct: 924 AQMDGSIEVDTEKGEGTRFTIHLPASE-EHPTD 955



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/166 (12%), Positives = 40/166 (24%), Gaps = 19/166 (11%)

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINK-----RKMEIEVMQLC-------SILE 459
           A+   P              G+    V           R++E +  +L         +L 
Sbjct: 159 AVQLSPLVLCGGMAMVAFVVGVVARWVLRVRRHLADQARELEEQRDRLEGHRAYTNRLLN 218

Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP-FTVFLEQNTPSVMNHYLTEILS 518
           AT D    ++  G     N  V +  G   ED+        F+           +  +L 
Sbjct: 219 ATDDLFFALDPTGQFQWWNDRVLETTGLSDEDVGSVDALDHFVPAEREKQAKQAIRRVLQ 278

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKK---LPFSSCYSLTMHDI 561
               Q           +   +    +      L           ++
Sbjct: 279 TGSGQV---EVPLVADDGVAVPYEFVGNPVENLEGERQIVCVGRNV 321


>gi|117925519|ref|YP_866136.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117609275|gb|ABK44730.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1049

 Score =  343 bits (881), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 93/414 (22%), Positives = 172/414 (41%), Gaps = 12/414 (2%)

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468
           N LAM     E+     +   +  +    +D + + R +         ++E     I   
Sbjct: 366 NELAMQVHDREQQLTATKEDLEKRVAARTLDLQTSMRALSEREANYRYLVEHARSIILRW 425

Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI--LSLDLRQTLE 526
             +G+I   N      FGY  + +L       +  N  S   +    +  ++        
Sbjct: 426 KPDGVITFCNDYALSFFGYSEQALLGSSVYETIVPNRESSGRNLHQRVDEVANTPNSFTF 485

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKES 582
                  K+ + + +    + +               DI+  K  + +L+ A+  A   +
Sbjct: 486 HENENICKDGRRVWVAWANRAILDEQGQLKELLSVGADITHLKMIQQELTLARDAANAAN 545

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
             KS FLA +SHEIRTP+ +I+G ++++         +         I R+G+ ++ I+N
Sbjct: 546 RAKSAFLAVMSHEIRTPMNSILGMTDLLMEHAL----DAEQRHALQAIARAGDALMIIIN 601

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI-PRILADL 701
           D+LD+SKIE+ ++ L      LD  ++    ++ L A EK + +       + P    D 
Sbjct: 602 DILDLSKIEADRLELELVETDLDNLMANLGDMLTLRAQEKGVKLSLLREEQLSPYRWCDQ 661

Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761
             ++QI +N++ NAI FT  G  I +  +      +   V D+G+G+   + E   + F 
Sbjct: 662 VRLRQILVNLIGNAIKFTHQGS-IEVKLSKGPGNRIRFSVSDSGIGIDLQQQEAIFESFN 720

Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
           Q  +S   R  GTGLGL +++ +V    G   ++S P KG+      P+    H
Sbjct: 721 QGDSSVTRRYGGTGLGLSISQRLVKLMGGVLKVYSRPGKGSTFFFTIPMAPVPH 774



 Score = 38.5 bits (88), Expect = 5.2,   Method: Composition-based stats.
 Identities = 28/294 (9%), Positives = 67/294 (22%), Gaps = 24/294 (8%)

Query: 44  PCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIP---------RTVRFTWNIDAHGY 94
             HD  +Q   T ++ E       LD + +                            G 
Sbjct: 371 QVHDREQQLTATKEDLEKRVAARTLDLQTSMRALSEREANYRYLVEHARSIILRWKPDGV 430

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDI----LHIDPNNHIGDLLKRQNTWY-GKTTL 149
           +   ++      G     ++G  + +           + +  + ++    N++   +   
Sbjct: 431 ITFCNDYALSFFGYSEQALLGSSVYETIVPNRESSGRNLHQRVDEVANTPNSFTFHENEN 490

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
              +G    V +  A   I     +       G           +          +  + 
Sbjct: 491 ICKDGR--RVWVAWANRAILDEQGQLKELLSVGA--DITHLKMIQQELTLARDAANAANR 546

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
            K    +V   +              +     +L     H    +      L+      +
Sbjct: 547 AKSAFLAVMSHEIRTPMNSILGMTDLLMEH--ALDAEQRHALQAIARAGDALMII----I 600

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
            +  D   I  ++   +     L N      + L+ R            E    
Sbjct: 601 NDILDLSKIEADRLELELVETDLDNLMANLGDMLTLRAQEKGVKLSLLREEQLS 654


>gi|242278764|ref|YP_002990893.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens DSM
           2638]
 gi|242121658|gb|ACS79354.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens DSM
           2638]
          Length = 822

 Score =  343 bits (881), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 91/384 (23%), Positives = 185/384 (48%), Gaps = 20/384 (5%)

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF--GYPVEDILRK 495
               +  RK+     QL S+L + S  IA+++ + ++++ N +  ++F  G   + +   
Sbjct: 170 RQLDVANRKLLAREEQLSSVLASMSAKIAVLDTDMMVIAANDSWREIFLPGTSEDVLDGI 229

Query: 496 PFTVFLEQN-----TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
            F   +  +     +   +   +  ++  + R+   + +     E K   L +   +   
Sbjct: 230 DFRDAVFSSGCLRGSLHELVDGVRSVVEGNSRKFSYEYSFEQGGEPKWYLLEVTPMQ-GE 288

Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
           S     +  +I+E K+ + +L  A+  AEK +  KS FLA +SHEIRTPL AIIG +++ 
Sbjct: 289 SGGAVASFIEITERKEMERELITARDAAEKANRFKSRFLASMSHEIRTPLNAIIGLTDLT 348

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
                      +  E    +  S + +L ++ND+LD+SK+E+  + L     SL EA+ +
Sbjct: 349 LRSELST----KQAEDLELVKISADQLLTLINDILDLSKVEARMLTLEESDFSLSEAMRD 404

Query: 671 AISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
            +  ++  A +K + +     +++P  +  D   +KQI  N++ N+I FT +GG + +  
Sbjct: 405 VVRSMEQQARDKGLALNIEVDDDVPEAVCGDQVRLKQILYNLIGNSIKFTENGG-VFVQV 463

Query: 730 TH------TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
           +       +    +++ VRDTG+G+ + +     + F Q  +S   +  GTGLGL +++ 
Sbjct: 464 SKLEDRKDSDEAVILVSVRDTGIGIPDEKQNIVFESFRQADDSTTRKFGGTGLGLAISRE 523

Query: 784 MVDANMGKFYIFSTPAKGTLIEII 807
           +V+   G+  + S+   G++    
Sbjct: 524 LVEMMGGRIGVKSSEGFGSVFSFH 547


>gi|147679019|ref|YP_001213234.1| signal transduction histidine kinase [Pelotomaculum
           thermopropionicum SI]
 gi|146275116|dbj|BAF60865.1| signal transduction histidine kinase [Pelotomaculum
           thermopropionicum SI]
          Length = 589

 Score =  343 bits (881), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 79/428 (18%), Positives = 176/428 (41%), Gaps = 35/428 (8%)

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
            L RS    ++  + +            +     ++  +  E+        +        
Sbjct: 186 WLSRSISRPLSQMSAVTREMARGNFRQRVEVTSDDEVGRLAEDFNYLAASLDQTV----- 240

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
             +  E  ++ +IL   ++G+  ++  G ++  N A+S+       ++L +P +     +
Sbjct: 241 SALSHEKGKIENILANMTEGVLAVDGRGQVILANGAISRTLKVDPAELLGRPVSEL---S 297

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---YSLTMHDI 561
               +    + +      ++ E        +     +   +  L  +         + DI
Sbjct: 298 CCPGLAGLFSAVAGSGEPRSAEFEM-----DGGRTFVLAHLAPLREAGGSYGAVGVLQDI 352

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           +E ++ +                + DF+A VSHE+RTPLT+I GF E + +   G +G  
Sbjct: 353 TELRKLE--------------LLRRDFVANVSHELRTPLTSIQGFLEALMD---GTIGES 395

Query: 622 RYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
           +  E Y   I +    +  ++N+LLD+++IESGK+     P+ +   V   I  ++    
Sbjct: 396 QARERYLKVIHQETLRLNRLINELLDLAQIESGKVRWEINPIDVPSLVGRVILKLKPQIE 455

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
             +I +       +P +L +   ++Q+  N+L NA+ ++P G  + +        ++ + 
Sbjct: 456 RHQITVVPEMPEGLPLMLGNEDRIEQVLTNLLENAVRYSPPGSTVTVRAAGRE-GKITVE 514

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V D G G+   +L    + F ++  S+     GTGLGL + + +++A+ G+  + S   +
Sbjct: 515 VADRGPGIPPEDLPHIWERFHRVEKSRSRSLGGTGLGLAIVRQIIEAHGGQVDVQSEAGQ 574

Query: 801 GTLIEIIF 808
           G++     
Sbjct: 575 GSVFSFTL 582


>gi|154251104|ref|YP_001411928.1| PAS/PAC sensor signal transduction histidine kinase [Parvibaculum
           lavamentivorans DS-1]
 gi|154155054|gb|ABS62271.1| PAS/PAC sensor signal transduction histidine kinase [Parvibaculum
           lavamentivorans DS-1]
          Length = 661

 Score =  343 bits (881), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 138/631 (21%), Positives = 256/631 (40%), Gaps = 26/631 (4%)

Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL-----TEYY 247
                      +  L E      ++      I  Q          ++   +        +
Sbjct: 18  AGEFRAASGDFYRALVENVGDILTILDCDGVITYQSPAVRKAMGTSEDLLVGRRIADLVH 77

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
               + ++           S + E      +N      +     L  +  +    L    
Sbjct: 78  PDDRERIERRIAECARVPGSEVLELVRLPHLNGTWRRLETRGCNLIGD-PDVAGILCVSR 136

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGL 366
             + +   +       +         + +  G      +     +   +    +  AG  
Sbjct: 137 DVTETHMLESKLREAEQLARF---GHWRWVKGEPAPQWSRGVARILGLEEGQ-LPAAGDW 192

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
              L  P+  D    + +  + +     + +      +    N   +    + +A+ + E
Sbjct: 193 YEHLVHPEDRDELLSQFIDAFETHEPVNSIT----RFRAGDGNYRYIKTYAYAEADAYSE 248

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
                G+  +  +    +  ++    +   + E  SD +A  + E  ++  + AV  + G
Sbjct: 249 IGALVGLAEDVHEEVEAELALKASEAKYRLMTEQASDVVAHYDAESKVIFISPAVEPILG 308

Query: 487 YPVEDILRKPFTV-FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
              E+ +  P +   + +           + ++    +++        K+   + L   +
Sbjct: 309 RKAEEFIGNPISEEMIHREDFPRARDAFIQCITSG--ESVHFDYRFLHKDGHYVWLESTM 366

Query: 546 KKLPFSSC-----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
           ++   +             DISE K+ + +L  A++ AE  S  KS FLA +SHE+RTPL
Sbjct: 367 RRACDTDGRQTAEVIGITRDISERKRHEMELLDARERAETASRTKSRFLANMSHELRTPL 426

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
            AIIGFSE+++ Q FG LG+PRY EYA  I+ SG L+LD+++D+LD+SKIE+GK  LH E
Sbjct: 427 NAIIGFSEILRMQMFGALGHPRYTEYAQLINESGALLLDLISDILDMSKIEAGKYELHPE 486

Query: 661 PVSLDEAVSEAISLVQLYANEKRILI--RTSFANNIPRILADLRSVKQIALNILSNAIHF 718
            V     +   + LV+  A E  I +  +   A     ++AD R++KQI LN+LSN+  F
Sbjct: 487 TVDAAALIESCVRLVRGRAEENGIHLVKKIQCAELGGTLVADERALKQIMLNLLSNSAKF 546

Query: 719 TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
           TP+GG+I ++ T  + E +   V DTG G+   ++ +  +PF QI     +  EGTGLGL
Sbjct: 547 TPAGGRISVALT-ETEETICFAVADTGRGIPADQIARLGQPFEQIATDAALSKEGTGLGL 605

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            L +++ + + G   I S    GT + +  P
Sbjct: 606 ALVRSLAELHGGSMAIDSELGVGTTVTVTLP 636



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/374 (7%), Positives = 89/374 (23%), Gaps = 16/374 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147
           +D  G +   S  + K +G     ++G R+ D+      +     I +  +   +   + 
Sbjct: 43  LDCDGVITYQSPAVRKAMGTSEDLLVGRRIADLVHPDDRERIERRIAECARVPGSEVLEL 102

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
              P                I   +   +G     +       +   +  +  ++     
Sbjct: 103 VRLPHLNGTWRRLETRGCNLIGDPD--VAGI--LCVSRDVTETHMLESKLREAEQLARFG 158

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
           H          +    +                      +    D L ++      + E 
Sbjct: 159 HWRWVKGEPAPQWSRGVARILGLEEGQLPAAGDWYEHLVHPEDRDELLSQFIDAFETHEP 218

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE--- 324
            +     F   + N    K Y     +   E    +            +     +     
Sbjct: 219 -VNSITRFRAGDGNYRYIKTYAYAEADAYSEIGALVGLAEDVHEEVEAELALKASEAKYR 277

Query: 325 -TVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
              ++       Y     + + +P+   +   K+ + I        +         +A  
Sbjct: 278 LMTEQASDVVAHYDAESKVIFISPAVEPILGRKAEEFIGNPISEEMIHREDFPRARDAFI 337

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
                 +    +    R   +  +       + +         +     GI  +  + + 
Sbjct: 338 QC---ITSGESVHFDYRF--LHKDGHYVWLESTMRRACDTDGRQTAEVIGITRDISERKR 392

Query: 443 NKRKMEIEVMQLCS 456
           ++ ++     +  +
Sbjct: 393 HEMELLDARERAET 406


>gi|297545596|ref|YP_003677898.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|296843371|gb|ADH61887.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 568

 Score =  343 bits (881), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 89/363 (24%), Positives = 163/363 (44%), Gaps = 41/363 (11%)

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
           + E  ++ +I+   +DG+   + +G I+  N A  K+    +E  L  P    L      
Sbjct: 244 QGEKNKIEAIIRFMTDGVVATDAKGRIIHFNEAAEKMLNANLE--LGMPIEGIL------ 295

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISEWKQ 566
                   +   D+  T+           K+L++ I   K       Y   +HDI+E  +
Sbjct: 296 -------NLKKEDVVATMNC-------GNKVLTVNIAPLKGNQQIEGYVYVLHDITEQHK 341

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
                           + + +F+A VSHE+RTP+  I  + E +    +  +      ++
Sbjct: 342 L--------------DTMRKEFVANVSHELRTPIATIKSYVETLL---YSDVDAEYSKKF 384

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
              ID   + +  +V DLL +SK++S   NL FE  +L++ V EAI+ + + A +K   +
Sbjct: 385 LKIIDSETDRMTRLVKDLLLLSKMDSEDNNLKFEQKNLNDIVVEAINRLSIEAQKKNQKL 444

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
                     +  D   ++Q+ +N+++NAI +TP  G I I T +       L V D G+
Sbjct: 445 IVDLQETPRYVYIDRDKMEQVIVNLVTNAIKYTPENGMIKIMTEY-DESFASLIVEDNGI 503

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+   +L +  + F ++  ++     GTGLGL + K +V+ + G+  I S   KGT++ +
Sbjct: 504 GIPKEDLPRIFERFYRVDKARSRELGGTGLGLSIVKQIVELHKGEVNIESEVGKGTIVRV 563

Query: 807 IFP 809
             P
Sbjct: 564 KLP 566


>gi|218438990|ref|YP_002377319.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7424]
 gi|218171718|gb|ACK70451.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7424]
          Length = 1516

 Score =  343 bits (881), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 110/628 (17%), Positives = 231/628 (36%), Gaps = 32/628 (5%)

Query: 202  KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
            +  + + E  +            +  Q P   +      +        K +        +
Sbjct: 900  QDQNRVLEQWEQALETNSPFQAEYRFQRPDGIVTWVYGQAVAETNDQGKLEGFLGTITDI 959

Query: 262  LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
               +++ +  Q+    +      + ++      + ++                  + E  
Sbjct: 960  SDRKQAEVKLQKLNDELEQKVEVRTRHLQQANQHLRQE-----ILERQQAEEALHKSEAQ 1014

Query: 322  TPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
                 +   I   FV   G  F +NP+      Y+S + +              ++D   
Sbjct: 1015 LRSMFENAAIGIAFVDLEGKPFKSNPALEKFLGYRSSE-LAQMSFTEFTYPEDIMTDLLL 1073

Query: 381  IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
             + +     +    +       I+ +    +          N   +      +  +  D 
Sbjct: 1074 YQDLFTSNKN----SYQMEKRYIRKDG-QGVWGHLTVSLVRNTQGKPQFAIAMVEDISDA 1128

Query: 441  RI-------NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
            +         +  ++   + L ++++   + I + NR+G     N+A++  +G  VE++ 
Sbjct: 1129 KQSEIERILAQEALKENQIFLRNVIDTVPNLIFVKNRQGQYTLANQAMAMAYGTTVEELE 1188

Query: 494  RKPFT--VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII--IKKLP 549
             K       +      V       + SL+     E+    +  E +         I    
Sbjct: 1189 GKSDADFHIIPAEVTQVQIDEEEVMNSLESLLIPEQPLTLANGEIRYFQTIKTPLISPDG 1248

Query: 550  FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
             +        DI+E KQ + K+  A    ++ +  K+ F+  VSHE RTPLT+I+G++E 
Sbjct: 1249 KAHYILGVATDITEHKQIQQKIEKALIKEKELNQLKTQFIDVVSHEFRTPLTSILGYAE- 1307

Query: 610  IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
            +  +    L   +   Y + I  +G  + D++ D+L IS+ ESGK+ L+  P++L+    
Sbjct: 1308 LLERHSDKLSEQKKNNYLHKIRIAGQRLSDLIEDVLCISRAESGKLQLNPHPLNLEVFCQ 1367

Query: 670  EAISLVQLYANEKRILIRTSFANN----IPRILADLRSVKQIALNILSNAIHFTPSGGQI 725
            + I  +Q+    K   +  +   +    +  IL D + ++ I  N+LSNA+ ++  G ++
Sbjct: 1368 DLIEEIQIGI-GKNHEMIFTRQPDSFNSLNGILLDEKLLRHILSNLLSNALKYSSLGSRV 1426

Query: 726  IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
             +S  +  NE+VI  + D G+G+      K    F +   S      GTGLGL +    V
Sbjct: 1427 ELSLYYK-NEQVIFEISDQGIGIPAEAHPKLFDSFYRA--SNVGNIPGTGLGLHIVYKYV 1483

Query: 786  DANMGKFYIFSTPAKGTLIEIIFPLYDT 813
              + G     S  + GT   +  P+ +T
Sbjct: 1484 TLHGGTIDFSSKISVGTTFRVKIPISET 1511



 Score =  135 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 48/511 (9%), Positives = 127/511 (24%), Gaps = 28/511 (5%)

Query: 97  EISEELPKTIGNYAFKM--IGMRLCDVSDILHID-PNNHIGDLLKRQNTWYGKTTLWPIE 153
             SEE  +  G  + ++        D       +         L  + ++     +   +
Sbjct: 505 YWSEETYRIFGLESQELHLTEKTFFDCLHPNDREFVIQQFKQALSNRESYNINYRIIRPD 564

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
            T     I      I          +  G +             K  ++K  H+      
Sbjct: 565 QTIRI--IQNQGNIILDSQGNPI--QMIGTIQDITESKLMEDHLKESEEKLRHIVTTTAD 620

Query: 214 HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE 273
              V           +P        K    + Y  +      + +  +       L  + 
Sbjct: 621 GIIVMNHSG-YIYFVNPAAESFFGLKADEFSGYEWNFSINHDSTELAIEHPNNKLLFLEV 679

Query: 274 DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF 333
                  +                                     E    + ++      
Sbjct: 680 KIVETLWDGEPVYLISLR------------DITQRKQAEEALKVSEKRYRDLINNLHAGV 727

Query: 334 FVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
            VY     +  +NP    L +      +             +      ++   +     T
Sbjct: 728 IVYRADKSILLSNPKANELLEISLEQMLGKTAIDPDWYFLREDGTKMPVEEYPVNIVIST 787

Query: 393 CIAASARLHTIQWNRE-NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV 451
                  +  +   R    + +    F + N   +         +  + +  +  ++   
Sbjct: 788 RYPLKNYVVGVHRPRSKTIIWLLINAFGEFNSCKQLNQVIVTFVDITEFKQAQEALQDSK 847

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
            +  ++ +A+  GI   + +G  +  N+    + G   +  L K ++  +     + +  
Sbjct: 848 RRYVTLAQASPVGIFRTDIQGNCIYVNQRWQAIAGLTWQKALGKGWSQAIHPQDQNRVLE 907

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQE 567
              + L  +     +        +  +  +                +  T+ DIS+ KQ 
Sbjct: 908 QWEQALETN--SPFQAEYRFQRPDGIVTWVYGQAVAETNDQGKLEGFLGTITDISDRKQA 965

Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
           + KL       E++   ++  L + +  +R 
Sbjct: 966 EVKLQKLNDELEQKVEVRTRHLQQANQHLRQ 996



 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 65/560 (11%), Positives = 138/560 (24%), Gaps = 96/560 (17%)

Query: 93   GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPI 152
            GY+  ++       G  A +  G           I+ ++    +    N           
Sbjct: 629  GYIYFVNPAAESFFGLKADEFSGYEWN-----FSINHDSTELAIEHPNNKLLFLEVKI-- 681

Query: 153  EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212
                  V       P+Y              +             K  +K++  L     
Sbjct: 682  ------VETLWDGEPVY-----------LISLRDITQRKQAEEALKVSEKRYRDLINNLH 724

Query: 213  GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP-- 270
                V +    I         L   +    L +     D     E    +  EE  +   
Sbjct: 725  AGVIVYRADKSILLSNPKANELLEISLEQMLGKTAIDPDWYFLREDGTKMPVEEYPVNIV 784

Query: 271  --------------EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
                           +    TI          F + +  ++    ++             
Sbjct: 785  ISTRYPLKNYVVGVHRPRSKTIIWLLINAFGEFNSCKQLNQVIVTFVDITEFKQAQEALQ 844

Query: 317  EGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
            + +          P+  F     GN  Y N  +  +        +   G    +    + 
Sbjct: 845  DSKRRYVTLAQASPVGIFRTDIQGNCIYVNQRWQAIAGLTWQKAL-GKGWSQAIHPQDQ- 902

Query: 376  SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
              N  ++         +   A  R             +      + N   +     G   
Sbjct: 903  --NRVLEQWEQALETNSPFQAEYRFQR---PDGIVTWVYGQAVAETNDQGKLEGFLGTIT 957

Query: 436  EDVDTRINKRKMEI---------------------------------------EVMQLCS 456
            +  D +  + K++                                           QL S
Sbjct: 958  DISDRKQAEVKLQKLNDELEQKVEVRTRHLQQANQHLRQEILERQQAEEALHKSEAQLRS 1017

Query: 457  ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
            + E  + GIA ++ EG    +N A+ K  GY   ++ +  FT F              ++
Sbjct: 1018 MFENAAIGIAFVDLEGKPFKSNPALEKFLGYRSSELAQMSFTEFTYPEDIMTDLLLYQDL 1077

Query: 517  LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLS 572
             + +     +       K+ + +   + +  +  +          + DIS+ KQ + +  
Sbjct: 1078 FTSNKNS-YQMEKRYIRKDGQGVWGHLTVSLVRNTQGKPQFAIAMVEDISDAKQSEIE-- 1134

Query: 573  HAKKIAEKESSHKSDFLARV 592
              + +A++       FL  V
Sbjct: 1135 --RILAQEALKENQIFLRNV 1152



 Score =  101 bits (252), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 54/517 (10%), Positives = 148/517 (28%), Gaps = 59/517 (11%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            D  G    I   +    G    ++  M+  D     ++     I  L +       +  
Sbjct: 378 TDEQGNFTYICPNIKHIFGYSCQEIENMKSIDQLFGQNL---FKITQLEESGEIINIERE 434

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD-KKFSHL 207
           +    G    + I++    IY + + F                   A  +    +     
Sbjct: 435 ILDKLGNTHVILINI--KQIYIKEKNF-----LFTCRDITERKQAEASLRDSQVRLAKAQ 487

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT-----EYYAHKDDVLKTEKYPLL 262
                G+       ++ +  +       ++++   LT     +     D     +++   
Sbjct: 488 QIAHLGNCDWNLITHEFYWSEETYRIFGLESQELHLTEKTFFDCLHPNDREFVIQQFKQA 547

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
            S   S          +      +     + ++     + +      + S   ++    +
Sbjct: 548 LSNRESYNINYRIIRPDQTIRIIQNQGNIILDSQGNPIQMIGTIQDITESKLMEDHLKES 607

Query: 323 PETVDKC----PIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
            E +            V    G +++ NP+       K+ +                 S 
Sbjct: 608 EEKLRHIVTTTADGIIVMNHSGYIYFVNPAAESFFGLKADEFSG---------YEWNFSI 658

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
           N+    + +   +   +    ++    W+ E    ++                     + 
Sbjct: 659 NHDSTELAIEHPNNKLLFLEVKIVETLWDGEPVYLISLR-------------------DI 699

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK-- 495
              +  +  +++   +   ++     G+ +   +  IL +N   ++L    +E +L K  
Sbjct: 700 TQRKQAEEALKVSEKRYRDLINNLHAGVIVYRADKSILLSNPKANELLEISLEQMLGKTA 759

Query: 496 --PFTVFLEQNTPSVMNHY--LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
             P   FL ++   +      +  ++S         + +   + + ++ L I       S
Sbjct: 760 IDPDWYFLREDGTKMPVEEYPVNIVISTRYPLKNYVVGVHRPRSKTIIWLLINAFGEFNS 819

Query: 552 ----SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
               +   +T  DI+E+KQ +  L  +K+     +  
Sbjct: 820 CKQLNQVIVTFVDITEFKQAQEALQDSKRRYVTLAQA 856



 Score = 86.2 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 46/483 (9%), Positives = 122/483 (25%), Gaps = 73/483 (15%)

Query: 38   KSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRF-TWNIDAHGYLK 96
             +  E        Q   T  +            ++   +  + +      +  D  G   
Sbjct: 812  NAFGEFNSCKQLNQVIVTFVDITEFKQAQEALQDSKRRYVTLAQASPVGIFRTDIQGNCI 871

Query: 97   EISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD-LLKRQNTWYGKTTLWPIEGT 155
             +++      G    K +G            +      +  L+  + +  +      +G 
Sbjct: 872  YVNQRWQAIAGLTWQKALGKGWSQAIHPQDQNRVLEQWEQALETNSPFQAEYRFQRPDG- 930

Query: 156  NLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHS 215
             +   +   A+   +   +  GF G   +             ++L+ +     E++  H 
Sbjct: 931  -IVTWVYGQAVAETNDQGKLEGFLG--TITDISDRKQAEVKLQKLNDELEQKVEVRTRHL 987

Query: 216  --SVEKEKYDIFSQQSPPPHLRMKNKVSS------------------------------- 242
              + +  + +I  +Q     L                                       
Sbjct: 988  QQANQHLRQEILERQQAEEALHKSEAQLRSMFENAAIGIAFVDLEGKPFKSNPALEKFLG 1047

Query: 243  -----------LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291
                           Y             L TS ++S   ++ +   +            
Sbjct: 1048 YRSSELAQMSFTEFTYPEDIMTDLLLYQDLFTSNKNSYQMEKRYIRKDGQGVWGHLTVSL 1107

Query: 292  LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE-----------TVDKCPIPFFV-YSHG 339
            ++N   +    ++     S +   +    L  E            +D  P   FV    G
Sbjct: 1108 VRNTQGKPQFAIAMVEDISDAKQSEIERILAQEALKENQIFLRNVIDTVPNLIFVKNRQG 1167

Query: 340  NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399
                AN +  +     +V+++E        +   +++     +  ++   +   I     
Sbjct: 1168 QYTLANQAMAMAYG-TTVEELEGKSDADFHIIPAEVTQVQIDEEEVMNSLESLLIP---- 1222

Query: 400  LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM------EIEVMQ 453
               +            I     +   +     G+  +  + +  ++K+      E E+ Q
Sbjct: 1223 EQPLTLANGEIRYFQTIKTPLISPDGKAHYILGVATDITEHKQIQQKIEKALIKEKELNQ 1282

Query: 454  LCS 456
            L +
Sbjct: 1283 LKT 1285



 Score = 85.8 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 60/173 (34%), Gaps = 14/173 (8%)

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
                  +++ + N++ +         IL   SD + I + +G        +  +FGY  
Sbjct: 340 FAVRAAAELERQYNEKALRESEQFYRLILSNISDAVLITDEQGNFTYICPNIKHIFGYSC 399

Query: 490 EDI-LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
           ++I   K       QN        +T++        +E+  L       ++ + I    +
Sbjct: 400 QEIENMKSIDQLFGQNLFK-----ITQLEESGEIINIEREILDKLGNTHVILINIKQIYI 454

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR-----VSHEI 596
              + +  T  DI+E KQ +  L  ++    K        L       ++HE 
Sbjct: 455 KEKN-FLFTCRDITERKQAEASLRDSQVRLAKAQQIAH--LGNCDWNLITHEF 504


>gi|296132739|ref|YP_003639986.1| multi-sensor signal transduction histidine kinase [Thermincola sp.
           JR]
 gi|296031317|gb|ADG82085.1| multi-sensor signal transduction histidine kinase [Thermincola
           potens JR]
          Length = 598

 Score =  343 bits (881), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 88/371 (23%), Positives = 177/371 (47%), Gaps = 30/371 (8%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            +  E  ++ S++ +  +G+   +R G ++  N    KL  +  +     P    +++  
Sbjct: 255 ALHQEKSKIESLIMSLGEGVIATDRTGTVVRVNTMARKLMQFAED-----PIGRNIKECC 309

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISE 563
              +   + ++L   + ++         KE   +       K    +       + DISE
Sbjct: 310 SGGVAEIIQKVLEEGIGKSA-----TLKKENITVLALASPIKDSRENISGTVCVLQDISE 364

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            ++ +                + DF++ VSHE+RTPLTAI G++E + +   G + +P  
Sbjct: 365 AEKLE--------------QMRKDFVSDVSHELRTPLTAIRGYNEALSD---GTVEDPEI 407

Query: 624 IE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
            + Y N I      +  +++DLLD+S+++SGK++L  EP+ +   +   +  ++   N K
Sbjct: 408 RQKYHNIIREETQRLERLIHDLLDLSRLQSGKISLELEPLDVGAVIRSTVEKLEPQINIK 467

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
            I +      NIP I+ +   + Q+ + +L NA+ +T +GG+I +S      + V + + 
Sbjct: 468 GIAVELDIPQNIPYIMGNEDRLVQLLIILLDNAVRYTDAGGKIFVSVGDVGLKGVEIAIT 527

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG G+   ++    + F ++  S+   G GTGLGL +A+ +V+ + G   + S   +GT
Sbjct: 528 DTGKGIPKEDIPFIWERFYKVDKSRTRTGAGTGLGLAIARQIVELHHGTIEVESELGRGT 587

Query: 803 LIEIIFPLYDT 813
             +I+FPL ++
Sbjct: 588 TFKIVFPLAES 598


>gi|168701427|ref|ZP_02733704.1| multi-sensor hybrid histidine kinase [Gemmata obscuriglobus UQM
           2246]
          Length = 1032

 Score =  343 bits (881), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 112/783 (14%), Positives = 232/783 (29%), Gaps = 95/783 (12%)

Query: 73  TFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH 132
              FDPI      TW +   G +   +    +  G  A + +G    ++   +  D    
Sbjct: 149 DHAFDPI-----LTWELG--GNITYWNAGAERLYGYTAAEAVGRSAHELLQTVLPDSRTA 201

Query: 133 IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192
           +   L+    W G+       G  + V    + + +          +             
Sbjct: 202 LEATLRCGGRWEGELRHRTKGGNWVVVD---SRMVVARATGALEILQS---DRDVTDQQR 255

Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL--RMKNKVSSLTEYYAHK 250
             A  +   ++F  + E          E+  + +       +     ++V          
Sbjct: 256 VEADVRDALERFRGVVEQAVDGIITIDERGTVETVNPAVARVFGYAPDEVVGRNVSLLMP 315

Query: 251 DDVLKTEKYPLLTSEESS------LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL- 303
           D         L     +       +  +      N  ++        ++  S   F  + 
Sbjct: 316 DPYRGEHDGYLADYLRTGTAKVIGVGREVRGRRKNGTEFPLDLTVSEIRVASGRRFTGIV 375

Query: 304 -SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIE 361
                           E      V++    FF++   G +   N        +   + + 
Sbjct: 376 RDITERKRAEEQLRASEARFRNFVEQAADAFFLHDAGGTILDVNRRACESLGFTREELVG 435

Query: 362 IA---------GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
           +            L   +     +           R D        RL   + +      
Sbjct: 436 MRAEAIDPDLSPDLLRRVAEDLATGRQVSLDARHRRKDGATFPVEVRLSPFEVDGRR--- 492

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR-- 470
                               +  +  D R+ +  + +        ++A + GI I +   
Sbjct: 493 ----------------LVLSLVRDITDRRLAEESLRLRDR----AIQAVTQGILITSPAL 532

Query: 471 -EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
            +  I   +     + GYP  + L +       +++       + E +       +    
Sbjct: 533 PDNPITYASPGFEGVTGYPPREALGRNCRFLQGKDSDPAAVALVREAVRAGRDCAV--EV 590

Query: 530 LGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
           L   K+       + +  +   +     +   + D+++ K+ + +  HA K+        
Sbjct: 591 LNYRKDGTPFWNALSVSPIRDDAGELTHFVGVLVDVTDRKKLEEQFHHALKM-----EAV 645

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
                 V+H+    LT I G+SEV+           R       I  +G     + + LL
Sbjct: 646 GRLAGGVAHDFNNLLTVINGYSEVLLAGMSDESDPDR--RAVAAIRDAGERAAALTSQLL 703

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
             S+    +  L    + L++ V+E   L+      + + + T+      R+  D     
Sbjct: 704 AFSR----RAVLKPRVLDLNKVVAETGKLL-GRLIGEDVRLSTALDPRAGRVSVDPGQFG 758

Query: 706 QIALNILSNAIHFTPSGGQIIISTT--------------HTSNEEVILRVRDTGVGMTNY 751
           Q+ +N+  NA    P+GGQ+ I T                     V+  V DTG GMT+ 
Sbjct: 759 QVLMNLAVNARDAMPTGGQLTIETRAVVLDEAYAKGWPEVRPGRYVMTAVSDTGCGMTDE 818

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
              +  +PF     +    G+GTGLGL     +V  + G   ++S    GT  ++  P  
Sbjct: 819 VKSRVFEPFFTTKEA----GKGTGLGLATVFGIVKQSGGHAEVYSEVGVGTTFKVYLPAV 874

Query: 812 DTS 814
             +
Sbjct: 875 SDA 877



 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 43/438 (9%), Positives = 117/438 (26%), Gaps = 16/438 (3%)

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
           G  +Y+ +  A + +    R   G        V       R   + L K+ + L +    
Sbjct: 94  GLLVYLAVGGAGVYLADARRTAQGLAEASAAAVATESAAHRQTQEALRKQQARLLDHAFD 153

Query: 214 HSSVEKEKYDIFSQQS-PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ 272
                +   +I    +            +     +     VL   +  L  +       +
Sbjct: 154 PILTWELGGNITYWNAGAERLYGYTAAEAVGRSAHELLQTVLPDSRTALEATLRCGGRWE 213

Query: 273 EDFHTINLNQYTK----KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
            +               +          +         +   + A   +        V++
Sbjct: 214 GELRHRTKGGNWVVVDSRMVVARATGALEILQSDRDVTDQQRVEADVRDALERFRGVVEQ 273

Query: 329 CPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
                  +   G +   NP+   +  Y   + +     L  L+  P   +++      L 
Sbjct: 274 AVDGIITIDERGTVETVNPAVARVFGYAPDEVVGRNVSL--LMPDPYRGEHDGYLADYLR 331

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
                 I    R    +        +     E            GI  +  + +  + ++
Sbjct: 332 TGTAKVIGV-GREVRGRRKNGTEFPLDLTVSEIRVASGR--RFTGIVRDITERKRAEEQL 388

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
                +  + +E  +D   + +  G IL  NR   +  G+  E+++           +P 
Sbjct: 389 RASEARFRNFVEQAADAFFLHDAGGTILDVNRRACESLGFTREELVGMRAEAIDPDLSPD 448

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL--TMHDISEWK 565
           ++     ++ +        +      K+     + + +          +   + DI++ +
Sbjct: 449 LLRRVAEDLATGRQVSLDAR---HRRKDGATFPVEVRLSPFEVDGRRLVLSLVRDITDRR 505

Query: 566 QEKNKLSHAKKIAEKESS 583
             +  L    +  +  + 
Sbjct: 506 LAEESLRLRDRAIQAVTQ 523


>gi|269139259|ref|YP_003295960.1| PAS/PAC domain protein [Edwardsiella tarda EIB202]
 gi|267984920|gb|ACY84749.1| PAS/PAC domain protein [Edwardsiella tarda EIB202]
 gi|304559167|gb|ADM41831.1| hypothetical protein ETAF_1723 [Edwardsiella tarda FL6-60]
          Length = 1520

 Score =  343 bits (881), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 111/666 (16%), Positives = 219/666 (32%), Gaps = 45/666 (6%)

Query: 178  FRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK 237
            FR   +      D +  AL  R       L + ++  + V      I   +      ++ 
Sbjct: 355  FRAERLAQGMTADLERLALVARNTSNAVILTDPQRRITWVNDGFERITGYRHDDVLGKVP 414

Query: 238  NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297
              +    +           +          +   +         +Y  +       +   
Sbjct: 415  GALLQCEKTDP-----RVIQAVHQALDRGLAFKGELLNRGRAGEEYWIEMEIQPRYDAEH 469

Query: 298  ESFEYLSHRNHPSLSA----YFDEGENLTPETVDKCPIPFFVYSHGN---LFYANPSFLL 350
                +++  +  +         +         +    +   +        L   N ++  
Sbjct: 470  RLIGFMAVESDITERKNTQHRLEAALRDNDALLATLNVHGIIAITDRHRRLIEVNDAYCQ 529

Query: 351  LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
            +T Y     +     +               +                            
Sbjct: 530  ITGYPREALLGQPPSI----VNSGTQSPAFWRQAWELLLAGQPWRGEVCNRA---RDGRV 582

Query: 411  LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN- 469
              +        +   +      I+ +    +  +  + I   QL    E    G+   + 
Sbjct: 583  YWVDTTIAPFKDADGQIDKYISIQFDITQAKTLQTNLSIARNQLLRATEVAELGVWSWSM 642

Query: 470  REGIILS---TNRAVSKLFGYPVEDILRKP----FTVFLEQNTPSVMNHYLTEILSLDLR 522
             +G ++     N     ++  P E          +   +  +    ++  L E L     
Sbjct: 643  ADGTLIFDETMN----AIYAIPPEMQDPHRLYAYWHTLIHPDDVEEVDATLQETLRAGQG 698

Query: 523  QTLEKITLGSTKEEKLLSLRIIIKK---LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579
                +       +++ +     + +   +  +        DI+  +Q +  L  AK  AE
Sbjct: 699  HVCRQRFRIRVGDQERIIESAAVVEQQGIGDTLMLVGINRDITRQRQAEATLQAAKLAAE 758

Query: 580  KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639
              +  KS FLA +SHE+RTPL AI+G   ++           R  +YA   + +   +L 
Sbjct: 759  NANQAKSAFLANMSHELRTPLNAILGMLTLLLKSGLTH----RQADYATKSEAAARALLR 814

Query: 640  IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RIL 698
            ++ND+LD SKIE+GKM L  EP SL   + +   ++   + +K + +      ++P  ++
Sbjct: 815  LLNDILDYSKIEAGKMELETEPFSLCNLLQDLAVILSSSSRQKPVEVLFDIDPSLPHWLV 874

Query: 699  ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILR--VRDTGVGMTNYELEK 755
             D   ++Q+ +N+  NA+ FT  G   + I       + V L   VRDTG+G+   +   
Sbjct: 875  GDSLRLQQVLINLGGNALKFTERGEVTLFIRLLAQDQQTVTLHFGVRDTGIGIAPEKQRA 934

Query: 756  AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL--IEIIFPLYDT 813
                F Q   S   R  GTGLGL +++  V    G   + S P KG+L    +  PL   
Sbjct: 935  IFSGFSQAEASITRRFGGTGLGLSISQRFVTMMGGTLQVESEPGKGSLFHFTLTLPLAAA 994

Query: 814  -SHPHD 818
             +HP D
Sbjct: 995  DAHPDD 1000



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/391 (8%), Positives = 95/391 (24%), Gaps = 27/391 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTWYGK 146
            D    +  +++   +  G     ++G     +      DP     +   L R   + G+
Sbjct: 385 TDPQRRITWVNDGFERITGYRHDDVLGKVPGALLQCEKTDPRVIQAVHQALDRGLAFKGE 444

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                  G      I++   P Y       GF    +        + +   +   +    
Sbjct: 445 LLNRGRAGEEY--WIEMEIQPRYDAEHRLIGFM--AVESDITERKNTQHRLEAALRDNDA 500

Query: 207 LHEIKK--GHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEKYPLL 262
           L       G  ++      +         +    +  +        +             
Sbjct: 501 LLATLNVHGIIAITDRHRRLIEVNDAYCQITGYPREALLGQPPSIVNSGTQSPAFWRQAW 560

Query: 263 TSEESSLPEQEDF--HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE--- 317
               +  P + +      +   Y         ++   +  +Y+S +   + +        
Sbjct: 561 ELLLAGQPWRGEVCNRARDGRVYWVDTTIAPFKDADGQIDKYISIQFDITQAKTLQTNLS 620

Query: 318 -GENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSV--DDIEIAGGLSTLLDAP 373
              N      +   +  + +S        + +   +        D   +     TL+   
Sbjct: 621 IARNQLLRATEVAELGVWSWSMADGTLIFDETMNAIYAIPPEMQDPHRLYAYWHTLIHPD 680

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
            + + +A     L            R+       +    +      +     + +   GI
Sbjct: 681 DVEEVDATLQETLRAGQGHVCRQRFRIRV----GDQERIIESAAVVEQQGIGDTLMLVGI 736

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
             +    R  +  ++    +L +  E  +  
Sbjct: 737 NRDITRQRQAEATLQA--AKLAA--ENANQA 763



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 48/415 (11%), Positives = 117/415 (28%), Gaps = 33/415 (7%)

Query: 170 SRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS 229
              RE+ G RG G +      +  R + +            +      + E Y +   Q 
Sbjct: 97  DLPREYPGVRGIGFIQRVARADLSRFVQQARIDDKIDFTPHQIQPQR-DPELYLVKYVQP 155

Query: 230 PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYF 289
             P+                          P LT     + + +      L         
Sbjct: 156 LTPNQAALGLDLRSEAVRWAGLQQAIDSGLPTLTGHIHLVQDSKQQPGALLYLPVYAVDA 215

Query: 290 GTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFL 349
             LQ   +     L                 +  + ++  P     Y+ G +        
Sbjct: 216 ALLQTPEQRRAALLG----------VIYSPLVIADLLNNIPE----YASGRVDI---ELY 258

Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI--KPVMLYRSDRTCIAASARLHTIQWNR 407
                 + D++      S  L    + D++    +  +   +    +     +  I    
Sbjct: 259 DTRGEMNSDNLIFDADGSKRLQHGIIDDHSPQEMRARVFIHTLPLSLPGRTMMLRISSTS 318

Query: 408 ENSLAMTF---IPFEKANQFPENMPQNGIEPEDVDTRINKRKME---IEVMQLCSILEAT 461
               ++ +               +  + +  + +     +R  +    ++ +L  +   T
Sbjct: 319 HFEASINYYSPWLLFTFGVLLSVLFTSLLRQQILGRFRAERLAQGMTADLERLALVARNT 378

Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN-TPSVMNHYLTEILSLD 520
           S+ + + + +  I   N    ++ GY  +D+L K     L+   T   +   + + L   
Sbjct: 379 SNAVILTDPQRRITWVNDGFERITGYRHDDVLGKVPGALLQCEKTDPRVIQAVHQALDRG 438

Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKL 571
           L    +   L   +  +   + + I+    +      +     DI+E K  +++L
Sbjct: 439 LA--FKGELLNRGRAGEEYWIEMEIQPRYDAEHRLIGFMAVESDITERKNTQHRL 491


>gi|262403062|ref|ZP_06079622.1| hypothetical protein VOA_001043 [Vibrio sp. RC586]
 gi|262350561|gb|EEY99694.1| hypothetical protein VOA_001043 [Vibrio sp. RC586]
          Length = 1045

 Score =  343 bits (881), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 103/378 (27%), Positives = 183/378 (48%), Gaps = 13/378 (3%)

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
           +     +++ +      +I+E     + II+ +G+IL  N+     +GY  E+ L +P  
Sbjct: 147 EIAKRTKELAVSEELSRTIIEGAPSSVVIIDSQGVILLWNKIAMTTYGYTSEEALGQPLF 206

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLE---KITLGSTKEEKLLSLR--IIIKKLPFSSC 553
             L+   P  +   LT  L ++ +Q+L          T++   + +   I I +L     
Sbjct: 207 TLLKMALPPKLATVLTLPLQVEQQQSLNDAFFEADTYTRDGTWVPIDLGISIFELNGQCQ 266

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
            ++ + D++  K  + +L+ A+  AE+    KS FLA +SHEIRTP+ AIIG S +    
Sbjct: 267 AAMFLRDVTVRKAVEQELNEARAKAEEAVEIKSMFLANMSHEIRTPMNAIIGMSHLALKT 326

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
                   +  +Y + I  S  L+L I+ND+LD SKIE+GK+++     SLDE +     
Sbjct: 327 ELSA----KQRDYVSKIHSSATLLLGIINDILDFSKIEAGKLSIERIEFSLDEVLHNVSM 382

Query: 674 LVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTH 731
           +    A +K + +  S    IPR ++ D   + Q+ +N+++NA+ FT  G   + +    
Sbjct: 383 VTGQKAFDKGLELLFSLPREIPRKLIGDPLRIGQVVINLVNNAVKFTEQGEISVNVQVGE 442

Query: 732 TSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
                + L+  V DTG+GMT  +     + F Q   S   +  GTGLGL +++ +V+   
Sbjct: 443 RQTGRIQLQFHVMDTGIGMTEKQTRHLFQAFTQADGSTTRKYGGTGLGLSISRRLVELME 502

Query: 790 GKFYIFSTPAKGTLIEII 807
           G+  + S P +G+     
Sbjct: 503 GEISVISQPEEGSCFTFT 520


>gi|326795319|ref|YP_004313139.1| multi-sensor hybrid histidine kinase [Marinomonas mediterranea MMB-1]
 gi|326546083|gb|ADZ91303.1| multi-sensor hybrid histidine kinase [Marinomonas mediterranea MMB-1]
          Length = 1479

 Score =  343 bits (881), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 108/531 (20%), Positives = 200/531 (37%), Gaps = 23/531 (4%)

Query: 297  KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYK 355
               F +          A   +   L        P    V   +G +   NP+F  L    
Sbjct: 539  GSVFTFQDCSEQVKFEAQLFDQIQLFKSLFVDAPEAVVVVGKNGLIQMVNPAFCHLYGAS 598

Query: 356  SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
              ++  +A  L  L      +             D       ++  T +    +   +  
Sbjct: 599  --EEYLVATPLQALCAEKDRAQFELTHVF-----DEETKVLESKQSTYKMFDGSEHVLDS 651

Query: 416  IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
            I     ++  E +       +  +    + ++     +L    ++   G    +     L
Sbjct: 652  IGSVLRDRDGEAVGFILHLRDITEKLKTEEEIFKSQSRLSMAADSVGIGTWEWDVTTNQL 711

Query: 476  STNRAVSKLFGYPV---EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
              +  + ++FG+     ++   K  ++    +   ++                +      
Sbjct: 712  EIDEWMYRIFGFEECSIDETFDKWQSLLFPSDYERLLLEIDELAQEKCEFLDSDYRITRP 771

Query: 533  TKEEKLLSLR--IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
              + + + +   I    +           DI+  K+ +  L  AK+ AE  S  KSDFLA
Sbjct: 772  DGQTRYIKVNAKITYNAIFDPIRMIGVNLDITTRKETELVLQKAKEQAELTSKAKSDFLA 831

Query: 591  RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650
             +SHEIRTPL  ++G +E++ +    P      +   + I  SG  +L+++N++LD SKI
Sbjct: 832  TMSHEIRTPLNGVLGMAELMSHTDLSP----EQLTQLDVIRDSGEGLLELINEILDFSKI 887

Query: 651  ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIAL 709
            E+G + L     +L++A+ +   L+ + A +K I +   F    P  ++ D+  +KQI  
Sbjct: 888  EAGHLVLESIDFNLEKAIFDIAHLLIVKAEDKGIELLVEFEQRCPRMLVGDVYRIKQIIT 947

Query: 710  NILSNAIHFTPSGGQ-IIISTTHTSNEEV--ILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
            N++SNAI FT  G   I +S     +  V   L V DTG+G+         K F Q  +S
Sbjct: 948  NLVSNAIKFTSEGEVVIRVSGKPLPSGGVDLRLSVSDTGIGIQESVQRNLFKAFTQADSS 1007

Query: 767  QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII--FPLYDTSH 815
               +  GTGLGL +   + +   G   + S   KG+   +    P    S 
Sbjct: 1008 TTRQYGGTGLGLAITSQLTNLMDGTIEVESQLGKGSCFSVSMVLPKSHLSE 1058



 Score = 99.3 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 32/280 (11%), Positives = 83/280 (29%), Gaps = 10/280 (3%)

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365
                       E      +         + S G + + N +   L  Y S +++     
Sbjct: 419 TRELSHQAIRGIEAKQRSILASSHDGIIGIDSEGQITFVNQAVAKLVSY-SQEELVGRPF 477

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
           +       K  D      +     D+       R   +      ++A++F      ++  
Sbjct: 478 VECFYSVDKNGDRYTPCVISTAILDKK--DVQDRRVYLIKKSGQAIAISFSVATVTDEND 535

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
                     +  +    + ++  ++    S+     + + ++ + G+I   N A   L+
Sbjct: 536 RYQGSVFTFQDCSEQVKFEAQLFDQIQLFKSLFVDAPEAVVVVGKNGLIQMVNPAFCHLY 595

Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
           G   E ++  P      +   +     LT +   + +    K +     +     L  I 
Sbjct: 596 GASEEYLVATPLQALCAEKDRAQFE--LTHVFDEETKVLESKQSTYKMFDGSEHVLDSIG 653

Query: 546 KKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKE 581
             L         + L + DI+E  + + ++  ++      
Sbjct: 654 SVLRDRDGEAVGFILHLRDITEKLKTEEEIFKSQSRLSMA 693



 Score = 75.4 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 60/147 (40%), Gaps = 6/147 (4%)

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
           ++   ++ + +     +  SIL ++ DGI  I+ EG I   N+AV+KL  Y  E+++ +P
Sbjct: 417 ELTRELSHQAIRGIEAKQRSILASSHDGIIGIDSEGQITFVNQAVAKLVSYSQEELVGRP 476

Query: 497 FTVFLEQNTPSVMN--HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-- 552
           F         +       +     LD +   ++      K  + +++   +  +   +  
Sbjct: 477 FVECFYSVDKNGDRYTPCVISTAILDKKDVQDRRVYLIKKSGQAIAISFSVATVTDENDR 536

Query: 553 --CYSLTMHDISEWKQEKNKLSHAKKI 577
                 T  D SE  + + +L    ++
Sbjct: 537 YQGSVFTFQDCSEQVKFEAQLFDQIQL 563



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/379 (9%), Positives = 105/379 (27%), Gaps = 22/379 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN-----HIGDLLKRQNTW 143
           ID+ G +  +++ + K +     +++G    +    +  + +          +L +++  
Sbjct: 448 IDSEGQITFVNQAVAKLVSYSQEELVGRPFVECFYSVDKNGDRYTPCVISTAILDKKDVQ 507

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +  L    G    + I  +   +   N  + G                 A      + 
Sbjct: 508 DRRVYLIKKSG--QAIAISFSVATVTDENDRYQG--SVFTFQDCSEQVKFEAQLFDQIQL 563

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL- 262
           F  L         V  +   I        HL   ++   +              ++ L  
Sbjct: 564 FKSLFVDAPEAVVVVGKNGLIQMVNPAFCHLYGASEEYLVATPLQALCAEKDRAQFELTH 623

Query: 263 ---TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG- 318
                 +    +Q  +   + +++        L++   E+  ++ H    +     +E  
Sbjct: 624 VFDEETKVLESKQSTYKMFDGSEHVLDSIGSVLRDRDGEAVGFILHLRDITEKLKTEEEI 683

Query: 319 ---ENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
              ++      D   I  + +    N    +     +  ++    I+        L  P 
Sbjct: 684 FKSQSRLSMAADSVGIGTWEWDVTTNQLEIDEWMYRIFGFEECS-IDETFDKWQSLLFPS 742

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
             +   ++   L +     + +  R   I      +  +        N   + +   G+ 
Sbjct: 743 DYERLLLEIDELAQEKCEFLDSDYR---ITRPDGQTRYIKVNAKITYNAIFDPIRMIGVN 799

Query: 435 PEDVDTRINKRKMEIEVMQ 453
            +    +  +  ++    Q
Sbjct: 800 LDITTRKETELVLQKAKEQ 818



 Score = 48.1 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/199 (7%), Positives = 57/199 (28%), Gaps = 11/199 (5%)

Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI- 457
             + ++ + +    +                   +  + ++     +  + +  +L ++ 
Sbjct: 98  DSYVMRCDDQIIGVLICKGITGKA----LTALTSLCSKTLEDYEASKAAKAQSTELRNMT 153

Query: 458 --LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
             +      +A  N +      N A   + G    +         +  +    +   +  
Sbjct: 154 HMMNNLPLSVAYYNTDLNYEFMNHAYQNVLGLEDGEWKGLSVPDVIT-DNFESVQPLIER 212

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSH 573
           + +      L K+   + +  K +       ++       Y +++ D + +++  + L  
Sbjct: 213 VRNEGKVDELIKVKPIADESIKYVHAYYA-SRVEDDELTGYFVSLQDQTSFRRTLDTLKA 271

Query: 574 AKKIAEKESSHKSDFLARV 592
              I         + L  +
Sbjct: 272 LHLITSDSRLSLDEKLQNI 290


>gi|332666257|ref|YP_004449045.1| multi-sensor hybrid histidine kinase [Haliscomenobacter hydrossis
           DSM 1100]
 gi|332335071|gb|AEE52172.1| multi-sensor hybrid histidine kinase [Haliscomenobacter hydrossis
           DSM 1100]
          Length = 814

 Score =  343 bits (880), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 107/559 (19%), Positives = 204/559 (36%), Gaps = 29/559 (5%)

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
            + +     N     +       Q   + S +  S     S      +  +   E V+  
Sbjct: 8   GKDQLLEERNARLRAEALLLEKEQLIIQLSQQNESLHTQLSSLDDLKQELHYVQEIVNNA 67

Query: 330 PIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388
               F+    G   Y NP+   L  +   +            D  ++        V    
Sbjct: 68  QDIVFISDYQGIFRYINPAAAQLLGFAMDEMSGKHFSALIREDYAEIIRAQYRDQVKNRL 127

Query: 389 SDR-TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
           +                W  +    +            +    + I  +    R    ++
Sbjct: 128 ASSYLEFPVKNAEEREMWLGQQVSFVYHGD--------KLFEAHSIARDITTLRTAGERL 179

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
                +  SI+E    G+  ++    I+       ++ GYP E+++ K            
Sbjct: 180 RKSEEKYRSIMENMELGLLEVDSTAKIIRAYPRFCEMVGYPEEELVGKDPKALFSP--QG 237

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISE 563
            ++    E +     +++        K   ++   I    +       +       DI+E
Sbjct: 238 FLDRAQQEEVKFLKGKSVIWEAPLRKKNGSIMWTLINNTPIYNDQGALVGTLGIHLDITE 297

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            K  +  L   ++ AE+    +  FLA +SHEIR P+ +I+G + ++ +       +   
Sbjct: 298 QKLLQVDLERTRQEAEQARDAEKAFLANISHEIRNPINSIVGMTNLLYDTYL----SEEQ 353

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
           +EY N +  S +L+  +V+D+LDISKIE GKM    E     E         +   +++ 
Sbjct: 354 LEYVNTLKYSADLLHALVSDVLDISKIEQGKMEPQLEDFDFFEMAKAMCKTFEFRLSQRP 413

Query: 684 ILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-----SNEEV 737
           I  +   + ++P+   +D   + QI +N+++NA  FT  G    IS           + +
Sbjct: 414 IQFQCEVSPSVPQRFRSDSTFINQILINLMNNAFKFTEEG---TISCLAEAKFIDQQQWI 470

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
              V+DTG+G+    L    + F Q   + +++ +GTGLGLP+ K +V+   G   + ST
Sbjct: 471 EFIVKDTGIGIPPDRLPFIFERFNQAGKANKVQRDGTGLGLPITKQLVELLGGNIKVQST 530

Query: 798 PAKGTLIEIIFPLYDTSHP 816
           P  GT   I+ P+     P
Sbjct: 531 PGVGTTFNILLPIEPALEP 549



 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/253 (8%), Positives = 67/253 (26%), Gaps = 11/253 (4%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID-PNNHIGDLLKRQNTWY 144
            +  D  G  + I+    + +G    +M G     +    + +       D +K +    
Sbjct: 71  VFISDYQGIFRYINPAAAQLLGFAMDEMSGKHFSALIREDYAEIIRAQYRDQVKNRLASS 130

Query: 145 GKTTLWP-IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                    E   +++   ++ +    +      F    I              ++ ++K
Sbjct: 131 YLEFPVKNAEEREMWLGQQVSFVYHGDKL-----FEAHSIARDITTLRTAGERLRKSEEK 185

Query: 204 FSHLHE-IKKGHSSVEK-EKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD--VLKTEKY 259
           +  + E ++ G   V+   K      +        + ++              + + ++ 
Sbjct: 186 YRSIMENMELGLLEVDSTAKIIRAYPRFCEMVGYPEEELVGKDPKALFSPQGFLDRAQQE 245

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
            +   +  S+  +      N +          + N+       L      +         
Sbjct: 246 EVKFLKGKSVIWEAPLRKKNGSIMWTLINNTPIYNDQGALVGTLGIHLDITEQKLLQVDL 305

Query: 320 NLTPETVDKCPIP 332
             T +  ++    
Sbjct: 306 ERTRQEAEQARDA 318


>gi|308068363|ref|YP_003869968.1| signal transduction histidine kinase [Paenibacillus polymyxa E681]
 gi|305857642|gb|ADM69430.1| Signal transduction histidine kinase [Paenibacillus polymyxa E681]
          Length = 600

 Score =  343 bits (880), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 86/404 (21%), Positives = 170/404 (42%), Gaps = 30/404 (7%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
            ++ ++  +         + +  ++  + +      L S++   + GI +I+    I   
Sbjct: 221 VQRRDEVGQLGEAINRMADSLQNQM--KTIRDNEDLLQSVMSNMTGGILMIDASECIALV 278

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
           NR   ++ G   + +  KP+    +    + +        S+  R+ L         EE+
Sbjct: 279 NRESERMLGVVGKRVTDKPYHELKKHYELTKLIEG-----SIQRRERLHGEVHLYNPEER 333

Query: 538 LLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
           ++ L  +               + DI+  ++ +              + +S+F+A VSHE
Sbjct: 334 IVLLDGVPMYEDEGGYRGMLFLLQDITAIRRLE--------------NMRSEFVANVSHE 379

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           ++TP+ A+ GF+E +     G         +   I      +  ++ D+L++SKIES + 
Sbjct: 380 LKTPIAAVKGFAETLLGG--GVKDEETARSFLQIIYDESERLNRLIGDILELSKIESKRS 437

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715
            L   PV +   +   +  +   A +KRI +     + +  + AD   ++QI LN+LSN 
Sbjct: 438 TLDCSPVHVSSFIESLLEKLNNVAAKKRITLHMDIPDEL-FMEADEDKLQQIFLNLLSNG 496

Query: 716 IHFTPSGGQIIIST----THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           I++T  GG++ I           E+V+  V DTG+G+   +L +  + F ++   +    
Sbjct: 497 INYTLDGGKVKIKVLTIQRENDTEKVVFTVSDTGIGIPKKDLPRIFERFYRVDKGRSRNS 556

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            GTGLGL + K +VD + G   + S    GT   +  PL     
Sbjct: 557 GGTGLGLSIVKHLVDLHHGTLSVESELGLGTTFTVELPLLQQEE 600



 Score = 39.2 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 22/168 (13%), Positives = 53/168 (31%), Gaps = 15/168 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           IDA   +  ++ E  + +G    ++      ++     +     I   ++R+   +G+  
Sbjct: 269 IDASECIALVNRESERMLGVVGKRVTDKPYHELKKHYELTK--LIEGSIQRRERLHGEVH 326

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           L+  E       + L  +P+Y       G+RG   +             +RL+   S   
Sbjct: 327 LYNPEERI----VLLDGVPMYEDEG---GYRGMLFL------LQDITAIRRLENMRSEFV 373

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256
                           F++      ++ +    S  +    + + L  
Sbjct: 374 ANVSHELKTPIAAVKGFAETLLGGGVKDEETARSFLQIIYDESERLNR 421


>gi|320158373|ref|YP_004190751.1| two-component system sensor protein [Vibrio vulnificus MO6-24/O]
 gi|319933685|gb|ADV88548.1| two-component system sensor protein [Vibrio vulnificus MO6-24/O]
          Length = 1072

 Score =  343 bits (880), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 103/378 (27%), Positives = 181/378 (47%), Gaps = 15/378 (3%)

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
           +  +    ++       +I++     +AI++    I   N     ++GY  E+   +   
Sbjct: 149 EIELRTADLKASEELSRTIIDGAPSSVAIVDESLSISLWNSTAQNVYGYSSEEATGENIL 208

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLE---KITLGSTKEEKLLSLR--IIIKKLPFSSC 553
             L  + P  ++H L+  L+L  +  +E        +TKE  ++ +   + I +L  +  
Sbjct: 209 TLLNMSLPDALSHVLSAPLALQNQPDVEGGFFEVETTTKEGHMVPIDLGVSIFELNGACH 268

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
            +L + D++  K  + +L+ AK  AE+    KS FLA +SHEIRTP+ AIIG S +    
Sbjct: 269 AALFLRDVTSRKAVEKELNDAKAKAEEAVEVKSMFLANMSHEIRTPMNAIIGMSHLALKT 328

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
              P    +  +Y + I  S  L+L I+ND+LD SKIE+GK+++      LD+       
Sbjct: 329 DLTP----KQHDYVSKIHSSATLLLGIINDILDFSKIEAGKLSIETTEFYLDDVFHNVSM 384

Query: 674 LVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH- 731
           +    A EK + +        PR +L D   + QI +N+++N++ FT  G +I +S  H 
Sbjct: 385 VTGQKAFEKGLELIFDLPRETPRCLLGDPLRLGQIIINLVNNSVKFTEKG-EITVSVHHI 443

Query: 732 ---TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                  E+  R+ DTG+GMT+ +++     F Q   S   +  GTGLGL + + +V+  
Sbjct: 444 RNVEDLVELEFRISDTGIGMTDKQMKSLFTAFTQADGSTTRKYGGTGLGLSICRRLVELM 503

Query: 789 MGKFYIFSTPAKGTLIEI 806
            G+  + S   KG+    
Sbjct: 504 GGQIRVESEAGKGSHFIF 521


>gi|154686556|ref|YP_001421717.1| ResE [Bacillus amyloliquefaciens FZB42]
 gi|154352407|gb|ABS74486.1| ResE [Bacillus amyloliquefaciens FZB42]
          Length = 593

 Score =  343 bits (880), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 88/364 (24%), Positives = 157/364 (43%), Gaps = 24/364 (6%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            +  E  QL +IL + +DG+  IN +G IL TN    +           +   +    N 
Sbjct: 247 ALNQEKEQLSNILSSMADGVITINIDGTILVTNPPAERFL---QAWYYEQNMNIKEGDNL 303

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
           P          ++ +  Q +E    G       + L   +            + D++E +
Sbjct: 304 PPEAKELFQNAVNTEKEQMIEMTLQGR----SWVLLMSPLYAESHVRGAVAVLRDMTEER 359

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           +                  + DF+A VSHE+RTP++ + G+SE I +            E
Sbjct: 360 RL--------------DKLREDFIANVSHELRTPISMLQGYSEAIVDDI--ASTEEEKKE 403

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
            A  I      +  +VNDLLD++++ESG   LH+E V+L E + +        A EK + 
Sbjct: 404 IAQIIYDESLRMGRLVNDLLDLARMESGHTGLHYETVNLHEFLEKISRKFSGVAKEKGVS 463

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +    + + P  + D   ++Q+  N++ NA+  T SGG + I+     +  + + ++D+G
Sbjct: 464 LTEDISVSQPECVFDEDKMEQVFTNLIDNALRHTESGGSVHIAAQIVKDG-LKIDIKDSG 522

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
            G+   +L    + F +   ++     GTGLGL + K +V+A+ G   + S+  KGT   
Sbjct: 523 SGIPEEDLPFIFERFYKADKARTRGRAGTGLGLAIVKNIVEAHGGSIAVHSSIDKGTTFT 582

Query: 806 IIFP 809
              P
Sbjct: 583 FYIP 586


>gi|115377643|ref|ZP_01464838.1| two-component sensor histidine kinase [Stigmatella aurantiaca
           DW4/3-1]
 gi|115365352|gb|EAU64392.1| two-component sensor histidine kinase [Stigmatella aurantiaca
           DW4/3-1]
          Length = 593

 Score =  343 bits (880), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 94/513 (18%), Positives = 190/513 (37%), Gaps = 34/513 (6%)

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEI 362
           +        A   E E      ++  P   +   + G L Y N  +   T  ++ +    
Sbjct: 84  ALLRQKEREALERESELRYRRLLNALPEAMWAAGADGKLNYVNQVWREYTGLEAEEPSLE 143

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
                      +       + V                 T +W+   +         + +
Sbjct: 144 VFLKVVHPADREHMRREWTEAVRQVSRMEREFRMRRHDGTWRWHLGRA-------VPERD 196

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAV 481
                +    +  +  D +  +  +E    +  + L+AT D + +   E   +   N   
Sbjct: 197 GTGRLVGFIAVATDIDDKKRAEATLE----RFKATLDATLDCVLMFEPEHLTLTYANVGA 252

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
           +K  G   E ++        +          L  + S +        T    ++   + +
Sbjct: 253 TKQLGLEREQLVGTRMLEVEDAFDEEAFRKILAPLQSGEQPS-HTYSTTHRRRDGTEIPV 311

Query: 542 RIIIKKLPFSSC---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
            ++++ +        +     DI+E K+ +  L          S  K  FLA  SHE+RT
Sbjct: 312 EVVLQYVAAGGGPGRFVSVARDITERKRAEEAL-------LLASEAKDAFLAAASHELRT 364

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
           PL A  G +  +   + G  G     +    I+R  + +  +V DLLDIS++++G+++L 
Sbjct: 365 PLAAAKGHA-HLALLKLGGEGETGTGKSLKIINRQIDRMTKLVEDLLDISRLQAGRLSLD 423

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718
            E   L   + E    + + +      +R      +  +  D   + Q+  N+LSNAI +
Sbjct: 424 LERFDLGTLIRETCDRMGVLSQLHP--LRVELQEQLEGLW-DRGRLDQVLTNLLSNAIRY 480

Query: 719 TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
           +P GG++++       E V L V+D GVG+   +     + FG+   S   +  G GLGL
Sbjct: 481 SPEGGEVLVKAA-ADGEGVQLSVKDCGVGIPPEKQGLIFERFGRAHGS---KYGGLGLGL 536

Query: 779 PLAKAMVDANMGKFYIFST--PAKGTLIEIIFP 809
            +++ +V+ + G+ ++ S      G+   +  P
Sbjct: 537 TISQGIVEQHGGRIWVDSQGCAGDGSTFHVWLP 569



 Score = 64.7 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 28/245 (11%), Positives = 58/245 (23%), Gaps = 6/245 (2%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQNTWY 144
            W   A G L  +++   +  G  A +        V      +       + +++ +   
Sbjct: 113 MWAAGADGKLNYVNQVWREYTGLEAEEPSLEVFLKVVHPADREHMRREWTEAVRQVSRME 172

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            +  +   +GT  +      A+P         GF    +           A  +R     
Sbjct: 173 REFRMRRHDGT--WRWHLGRAVPERDGTGRLVGF--IAVATDIDDKKRAEATLERFKATL 228

Query: 205 SHLHE-IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
               + +           Y            R +   + + E     D+    +    L 
Sbjct: 229 DATLDCVLMFEPEHLTLTYANVGATKQLGLEREQLVGTRMLEVEDAFDEEAFRKILAPLQ 288

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
           S E         H          +              ++S     +     +E   L  
Sbjct: 289 SGEQPSHTYSTTHRRRDGTEIPVEVVLQYVAAGGGPGRFVSVARDITERKRAEEALLLAS 348

Query: 324 ETVDK 328
           E  D 
Sbjct: 349 EAKDA 353



 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 61/238 (25%), Gaps = 14/238 (5%)

Query: 94  YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK--TTLWP 151
            L   +    K +G    +++G R+ +V D    +    I   L+          TT   
Sbjct: 244 TLTYANVGATKQLGLEREQLVGTRMLEVEDAFDEEAFRKILAPLQSGEQPSHTYSTTHRR 303

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
            +GT + V + L  +        F       +                         E K
Sbjct: 304 RDGTEIPVEVVLQYVAAGGGPGRF-----VSVARDITERKRAEEALL-------LASEAK 351

Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271
               +    +       +         K+    E    K   +   +   +T     L +
Sbjct: 352 DAFLAAASHELRTPLAAAKGHAHLALLKLGGEGETGTGKSLKIINRQIDRMTKLVEDLLD 411

Query: 272 QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
                   L+   ++   GTL   + +    LS  +   +              +D+ 
Sbjct: 412 ISRLQAGRLSLDLERFDLGTLIRETCDRMGVLSQLHPLRVELQEQLEGLWDRGRLDQV 469


>gi|288940464|ref|YP_003442704.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
 gi|288895836|gb|ADC61672.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
          Length = 963

 Score =  343 bits (880), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 130/706 (18%), Positives = 247/706 (34%), Gaps = 51/706 (7%)

Query: 146 KTTLWPIEGTNLYVPIDLAALP----IYSRNRE------------FSGFRGFGI---VHV 186
              ++P+EG    + +DL + P       + R               G  GF     VHV
Sbjct: 126 IRLIYPLEGNTAALGLDLRSRPDQASAADQARRDRRAVLNGPIQLVQGGCGFAARFPVHV 185

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY 246
            R   + R  G               G              +   P   +    + + + 
Sbjct: 186 ERPGAEERFWGLVSALIDCEQLYRDSGLLETGTTLEVAMRGRDGDPDSDVFFGRAGIFDE 245

Query: 247 YAHKDD-VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
                +  L    + +        P                     L   +       + 
Sbjct: 246 DPVLIELPLPHGSWRIAAIPHGGWPAHAANVWTLRLALLIVLLLVLLPAMALARTASTTR 305

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365
                 +      E     T +       +   G +  +N   + + +      +   G 
Sbjct: 306 ALSQRTAEALSLTEATLEATDNGI---LVIDLAGRVVSSNQRVIDMWRIPH--ALLETGD 360

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
            + +L        +    V   R       AS+R   +  +      +            
Sbjct: 361 DAQILTHVIDQLADPEPFVRKVRELYEHPDASSRDTLLFRDGR----VFARFSHPQRVGS 416

Query: 426 ENMPQNGIEPEDVDTRINKR-----------KMEIEVMQ---LCSILEATSDGIAIINRE 471
             + +     +  D    ++           ++E    Q   L  +L A  D + + + +
Sbjct: 417 AVVGRVWSFLDVTDQTRAEQNVRELSRQLSEELERSEQQRYLLQCLLSAIPDAVWMKDPQ 476

Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
           G+ LS N   +++ G  V+ I+      +                         E+    
Sbjct: 477 GVFLSCNPEFAQMLGQDVDRIIGTSDDDYFPPEVAEAFRADDRRAAESTTPIRCEEWIDY 536

Query: 532 STKEEKLLSLRI-IIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
            +   ++L   +    +              DI+       +L  A+  A + S  KS F
Sbjct: 537 VSDARRVLWATVKSAVRAEDGRLLGVLGIARDITSQHTVLTELEEARNAALQASEAKSRF 596

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
           LA +SHE+RTPL AIIGFS+++      PL   +     ++I  SG  +L+++ND+LD++
Sbjct: 597 LAHMSHELRTPLNAIIGFSQMLDMGALDPLT-AQQQTAVSHIRDSGRHLLELINDILDLA 655

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIA 708
           +IESG+  L+ + + LD  + E ++L +  A+ +RI I       +  + AD   ++Q+ 
Sbjct: 656 RIESGQSELNLDAIPLDPLIDEVMALSRPAADGRRICIDRGGEAGL-HVYADRTRLRQVL 714

Query: 709 LNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
           LN+ SNAI +   GG++ I     + E V +RV DTG G+     E+  +PF ++  +++
Sbjct: 715 LNLTSNAIKYNRLGGRVTIDVEP-AGEWVRIRVSDTGAGIDESLREEIFQPFQRL-GAEK 772

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF-PLYDT 813
              EGTG+GL + K +++   G     S P +G+       P++  
Sbjct: 773 TAIEGTGIGLIICKHLIEVMGGSIDFDSVPGQGSRFWFELRPVHPE 818



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/243 (7%), Positives = 53/243 (21%), Gaps = 8/243 (3%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTWY 144
            W  D  G     + E  + +G    ++IG    D       +          +      
Sbjct: 470 VWMKDPQGVFLSCNPEFAQMLGQDVDRIIGTSDDDYFPPEVAEAFRADDRRAAESTTPIR 529

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            +  +  +      +   +    + + +    G  G  I       +      +      
Sbjct: 530 CEEWIDYVSDARRVLWATVK-SAVRAEDGRLLGVLG--IARDITSQHTVLTELEEARNAA 586

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK----NKVSSLTEYYAHKDDVLKTEKYP 260
               E K    +    +              +     + +++  +               
Sbjct: 587 LQASEAKSRFLAHMSHELRTPLNAIIGFSQMLDMGALDPLTAQQQTAVSHIRDSGRHLLE 646

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
           L+         +     +NL+          +   S+ + +           A      +
Sbjct: 647 LINDILDLARIESGQSELNLDAIPLDPLIDEVMALSRPAADGRRICIDRGGEAGLHVYAD 706

Query: 321 LTP 323
            T 
Sbjct: 707 RTR 709


>gi|294624628|ref|ZP_06703300.1| sensor histidine kinase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292601063|gb|EFF45128.1| sensor histidine kinase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
          Length = 667

 Score =  343 bits (880), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 90/481 (18%), Positives = 184/481 (38%), Gaps = 32/481 (6%)

Query: 341 LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400
           +   N +F   T             +  LL      +                I    + 
Sbjct: 13  IRTTNGAFERYTGLSPNAL---NVSIRNLLPE---HEQEWFDRYGHVARTGNRIHFEMQA 66

Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
             ++          +         PE      +  +  + +  +R++     +  ++ + 
Sbjct: 67  KALKR--------WYSVDAFRVGQPEQARVAILFMDITERKRVERELAESEARFSALADG 118

Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520
               + +++ +G++   N A  + FG  +       ++  L  +             SL 
Sbjct: 119 LPMPVWVLDAQGVVRFVNSAYGEFFGLDISSGTVSAWSELLHPDDLPTFQ--FELAASLQ 176

Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH----DISEWKQEK-------N 569
            ++ L  +      + +   + +       +    + +     D++E ++ +        
Sbjct: 177 EQRGLRALVRARRHDGQWRWIEMTATPRYSADGRFIGLAGSSPDVTEQREIELAREQLLE 236

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
               A+  AE  +  K +FLA +SHE+RTPLT I+G+SE++  +         Y +  + 
Sbjct: 237 SERSARNEAESMARLKDEFLATLSHELRTPLTTILGWSELLLQRVEEGQP---YYKGLSV 293

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I  S      +++D+LD+S +  GK+ L  E + L E V EA++  +L A  K  ++   
Sbjct: 294 IASSARAQKRLISDMLDLSSMLLGKVQLEVESLDLVEQVREALNTQELAAEGKDQVLELH 353

Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749
                  +L D   ++Q+  N+LSNAI FTP+ G+I +      +  +++ V D+G G+ 
Sbjct: 354 VPPTPCLVLGDATRLQQVLWNLLSNAIKFTPAHGRIDVKIE-RDDGHLVVSVCDSGDGIA 412

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIF 808
              L      F Q   +   +  G GLGL + + +V+ + G+    S    KG    +  
Sbjct: 413 AEFLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQLVEMHGGQVGATSGGRGKGATFTVRL 472

Query: 809 P 809
           P
Sbjct: 473 P 473



 Score = 73.5 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 47/463 (10%), Positives = 117/463 (25%), Gaps = 48/463 (10%)

Query: 54  FTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM 113
           F D  +         +SE  F        +   W +DA G ++ ++    +  G      
Sbjct: 92  FMDITERKRVERELAESEARFSALADGLPMP-VWVLDAQGVVRFVNSAYGEFFGLDISSG 150

Query: 114 IGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172
                 ++     +      +   L+ Q            +G   +  I++ A P YS +
Sbjct: 151 TVSAWSELLHPDDLPTFQFELAASLQEQRGLRALVRARRHDG--QWRWIEMTATPRYSAD 208

Query: 173 REFSGFRGFG-IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231
             F G  G    V   R     R      ++   +  E        E         ++P 
Sbjct: 209 GRFIGLAGSSPDVTEQREIELAREQLLESERSARNEAESMARLKD-EFLATLSHELRTPL 267

Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291
             +   +++               +       +++  + +  D  ++ L +   +     
Sbjct: 268 TTILGWSELLLQRVEEGQPYYKGLSVIASSARAQKRLISDMLDLSSMLLGKVQLEVESLD 327

Query: 292 LQN---NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSF 348
           L      +  + E  +      L  +      L      +     +      + +  P+ 
Sbjct: 328 LVEQVREALNTQELAAEGKDQVLELHVPPTPCLVLGDATRLQQVLWNLLSNAIKF-TPAH 386

Query: 349 LLLTKYKSVDDI-------EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401
             +      DD        +   G++                    +     +  +    
Sbjct: 387 GRIDVKIERDDGHLVVSVCDSGDGIAAEFLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQ 446

Query: 402 TIQWNREN-----------SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR----K 446
            ++ +              +     +P    +Q      +             +     +
Sbjct: 447 LVEMHGGQVGATSGGRGKGATFTVRLPEHIPDQAKRPRRELRRRLMSEQIVEARALNGLR 506

Query: 447 MEIEVMQ------LCSILE----------ATSDGIAIINREGI 473
           +     Q      L  +LE          + +D +A+I+  G 
Sbjct: 507 LLAVEDQPDMLDYLRRLLEEQGAEVVTAGSATDALALIDHRGH 549



 Score = 57.7 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 19/173 (10%), Positives = 51/173 (29%), Gaps = 11/173 (6%)

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLT 352
             ++ +  ++       +     E E       D  P+P +V    G + + N ++    
Sbjct: 84  EQARVAILFMDITERKRVERELAESEARFSALADGLPMPVWVLDAQGVVRFVNSAYGEFF 143

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
                  ++I+ G  +        D+       L  S +      A L   + +      
Sbjct: 144 G------LDISSGTVSAWSELLHPDDLPTFQFELAASLQEQRGLRA-LVRARRHDGQWRW 196

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRI---NKRKMEIEVMQLCSILEATS 462
           +      + +     +   G  P+  + R     + ++        +  E+ +
Sbjct: 197 IEMTATPRYSADGRFIGLAGSSPDVTEQREIELAREQLLESERSARNEAESMA 249



 Score = 43.9 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 14/110 (12%), Positives = 38/110 (34%), Gaps = 5/110 (4%)

Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530
           + +I +TN A  +  G     +        L ++     + Y     + +    +     
Sbjct: 10  DYVIRTTNGAFERYTGLSPNALNV-SIRNLLPEHEQEWFDRYGHVARTGNR---IHFEMQ 65

Query: 531 GSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
               + +  S+       P  +  ++   DI+E K+ + +L+ ++     
Sbjct: 66  AKALK-RWYSVDAFRVGQPEQARVAILFMDITERKRVERELAESEARFSA 114


>gi|256830393|ref|YP_003159121.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256579569|gb|ACU90705.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 902

 Score =  343 bits (880), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 85/392 (21%), Positives = 162/392 (41%), Gaps = 17/392 (4%)

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI--INREGIILSTNRAVSKLFGY 487
              +  +       ++ +     +   + E     IA+     +GI    N+A   L+GY
Sbjct: 354 AESLTLDIARRTQAEKALLESESRFRKLFEQVP-AIAVQGYGMDGIARYWNQASENLYGY 412

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
             ++ +    T  +               +                K+   + +      
Sbjct: 413 SADEAIGAKLTDLIIPPEMRTDVEAAMRSMGETKIPIPASELTLMRKDGSRVVVFSSHAI 472

Query: 548 LPFSSC---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
           +  +           D++  K+ +  L   K  AE  +  KS+FLA +SHEIRTP+  ++
Sbjct: 473 VEKAGGEPELFCVDIDLTSRKEAEEALLKLKDAAEAANQAKSEFLANMSHEIRTPINGVM 532

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           G  ++++        +     Y +    + N +  ++ D+LD+S++E+GKM +   P  +
Sbjct: 533 GMLQLLETTPL----DAEQASYIHMAAEAANRLTRLLTDILDLSRVEAGKMEIREAPFHI 588

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG 723
            + +     L  + A  K +++    A ++P IL  D   ++Q+  N++ NA+ FT  G 
Sbjct: 589 QDIIDSVTGLFAVTARNKGLILECRLAPDMPGILLGDEMRIRQVLFNLVGNALKFTERG- 647

Query: 724 QII-----ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
           ++      +S        V L V DTG+G+    L +  +PF Q+ NS     +G GLGL
Sbjct: 648 RVEMDISALSAKDEDTCRVHLCVTDTGIGIAEDRLGEIFEPFRQVENSFTRNYQGAGLGL 707

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            +   +V    G   I S P +GT + ++ PL
Sbjct: 708 SIVHRLVALMAGTISIESAPGEGTSVHVVLPL 739



 Score = 46.2 bits (108), Expect = 0.021,   Method: Composition-based stats.
 Identities = 29/300 (9%), Positives = 75/300 (25%), Gaps = 26/300 (8%)

Query: 50  EQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNY 109
            +S   D  + + +    L+SE+ F                  G  +  ++      G  
Sbjct: 354 AESLTLDIARRTQAEKALLESESRFRKLFEQVPAIAVQGYGMDGIARYWNQASENLYGYS 413

Query: 110 AFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN-----TWYGKTTLWPIEGTNLYVPIDLA 164
           A + IG +L D+     +  +  +   ++            + TL   +G+ +   +  +
Sbjct: 414 ADEAIGAKLTDLIIPPEMRTD--VEAAMRSMGETKIPIPASELTLMRKDGSRV---VVFS 468

Query: 165 ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDI 224
           +  I  +         F +        +      +L       ++ K    +    +   
Sbjct: 469 SHAIVEKAGGEPEL--FCVDIDLTSRKEAEEALLKLKDAAEAANQAKSEFLANMSHEIRT 526

Query: 225 FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYT 284
                 P +  M       T     +                  L +  D   +   +  
Sbjct: 527 ------PINGVMGMLQLLETTPLDAEQASYIHMAAEAANRLTRLLTDILDLSRVEAGKME 580

Query: 285 KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYA 344
            ++    +Q+         +           ++G  L        P    +     +   
Sbjct: 581 IREAPFHIQDIIDSVTGLFAVTAR-------NKGLILECRLAPDMP-GILLGDEMRIRQV 632


>gi|166713559|ref|ZP_02244766.1| two-component system sensor histidine kinase-response regulator
           hybrid protein [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 648

 Score =  343 bits (880), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 94/481 (19%), Positives = 189/481 (39%), Gaps = 32/481 (6%)

Query: 341 LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400
           +   N +F   T   +         +  LL      +        L       I    + 
Sbjct: 30  IRTTNGAFERYTGLSTNAL---NVSIRDLLPE---HEQEWFDRYGLVARTGNRIHFEMQA 83

Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
             ++          +         PE      +  +  + +  +R++     +  ++ + 
Sbjct: 84  KALKR--------WYSVDAFRVGRPEQGRVAILFMDITERKRVERELAESEARFSALADG 135

Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520
               + +++ +G++   N A  + FG  +       ++  L  +             SL 
Sbjct: 136 LPMPVWVLDAQGVVRFVNSAYGEFFGLDISSGTVSAWSDLLHPDDLPTFQ--FELAASLQ 193

Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH----DISEWKQEK-------N 569
            ++ L  +      + +   + +       +    + +     D++E ++ +        
Sbjct: 194 EQRGLRALVRARRHDGQWRWIEMTATPRYSADGRFIGLAGSSPDVTEQREIELAREQLLE 253

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
               A+  AE  +  K +FLA +SHE+RTPLT I+G+SE++  +     G+P Y    + 
Sbjct: 254 SERSARNEAESMARLKDEFLATLSHELRTPLTTILGWSELLLQRV--EEGHPTYKG-LSV 310

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I  S      +++D+LD+S +  GK+ L  E + L E V EA++  +L A  K  ++   
Sbjct: 311 IASSARAQKRLISDMLDLSSMLLGKVQLEVESLDLVEQVREALNTQELAAEGKDQILELH 370

Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749
                  +L D   ++Q+  N+LSNAI FTP+ G+I +S     +  +++ V D+G G+ 
Sbjct: 371 VPPTPCLVLGDATRLQQVVWNLLSNAIKFTPAHGRIDVSIE-RDDGHLVVSVCDSGDGIA 429

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIF 808
              L      F Q   +   +  G GLGL + + +V+ + G+    S    KG    +  
Sbjct: 430 AEFLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQLVEMHGGQVGATSGGRGKGATFTVRL 489

Query: 809 P 809
           P
Sbjct: 490 P 490



 Score = 75.8 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 49/463 (10%), Positives = 118/463 (25%), Gaps = 48/463 (10%)

Query: 54  FTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM 113
           F D  +         +SE  F        +   W +DA G ++ ++    +  G      
Sbjct: 109 FMDITERKRVERELAESEARFSALADGLPMP-VWVLDAQGVVRFVNSAYGEFFGLDISSG 167

Query: 114 IGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172
                 D+     +      +   L+ Q            +G   +  I++ A P YS +
Sbjct: 168 TVSAWSDLLHPDDLPTFQFELAASLQEQRGLRALVRARRHDG--QWRWIEMTATPRYSAD 225

Query: 173 REFSGFRGFG-IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231
             F G  G    V   R     R      ++   +  E        E         ++P 
Sbjct: 226 GRFIGLAGSSPDVTEQREIELAREQLLESERSARNEAESMARLKD-EFLATLSHELRTPL 284

Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291
             +   +++        H      +       +++  + +  D  ++ L +   +     
Sbjct: 285 TTILGWSELLLQRVEEGHPTYKGLSVIASSARAQKRLISDMLDLSSMLLGKVQLEVESLD 344

Query: 292 LQN---NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSF 348
           L      +  + E  +      L  +      L      +     +      + +  P+ 
Sbjct: 345 LVEQVREALNTQELAAEGKDQILELHVPPTPCLVLGDATRLQQVVWNLLSNAIKF-TPAH 403

Query: 349 LLLTKYKSVDDI-------EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401
             +      DD        +   G++                    +     +  +    
Sbjct: 404 GRIDVSIERDDGHLVVSVCDSGDGIAAEFLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQ 463

Query: 402 TIQWNREN-----------SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR----K 446
            ++ +              +     +P    +Q      +             +     +
Sbjct: 464 LVEMHGGQVGATSGGRGKGATFTVRLPEHIPDQAKRPRRELRRRLMSEQIVEARALNGLR 523

Query: 447 MEIEVMQ------LCSILE----------ATSDGIAIINREGI 473
           +     Q      L  +LE          + +D +A+I+  G 
Sbjct: 524 LLAVEDQPDMLDYLRRLLEEQGAEVVTAGSATDALALIDHRGH 566



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/173 (10%), Positives = 50/173 (28%), Gaps = 11/173 (6%)

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLT 352
              + +  ++       +     E E       D  P+P +V    G + + N ++    
Sbjct: 101 EQGRVAILFMDITERKRVERELAESEARFSALADGLPMPVWVLDAQGVVRFVNSAYGEFF 160

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
                  ++I+ G  +        D+       L  S +      A L   + +      
Sbjct: 161 G------LDISSGTVSAWSDLLHPDDLPTFQFELAASLQEQRGLRA-LVRARRHDGQWRW 213

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRI---NKRKMEIEVMQLCSILEATS 462
           +      + +     +   G  P+  + R     + ++        +  E+ +
Sbjct: 214 IEMTATPRYSADGRFIGLAGSSPDVTEQREIELAREQLLESERSARNEAESMA 266


>gi|124009081|ref|ZP_01693764.1| PAS [Microscilla marina ATCC 23134]
 gi|123985295|gb|EAY25215.1| PAS [Microscilla marina ATCC 23134]
          Length = 1290

 Score =  343 bits (880), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 106/539 (19%), Positives = 194/539 (35%), Gaps = 18/539 (3%)

Query: 278  INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS 337
                   +           + + E L   N    S      E+    ++        ++ 
Sbjct: 608  AEETVKLQYLQIEMQNQELQATNEELRQTNEVLFSTMEQLRESEQRLSLATLSAKMGIWD 667

Query: 338  HG---NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394
                 N    +     L   K  D    A         P   D   +    L   +    
Sbjct: 668  WDLLNNHLVWDKQMFELYGCKPGD-FPNAYDAWEKHLHPD--DKKQVYLDSLLAREGKAE 724

Query: 395  AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
                    +     N   +        +   + +   GI  +    +  +  +  +   L
Sbjct: 725  Y--NTEFRVCHPNGNIRHIKGFGKVVFDDHAQPVRMIGINWDITTQKRAEEDLTNQKRIL 782

Query: 455  CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
              IL+     I I + EG ++  N+A  + +    ++IL K       +           
Sbjct: 783  EQILDTLPINIYIKDDEGRLMFLNKATCQTYRIT-KEILGKTDAEIFPEYLAEAFVKDDM 841

Query: 515  EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH-DISEWKQEKNKLSH 573
             + +     T E+          LL  + +I      + Y L    DI+  K+ + +L  
Sbjct: 842  LVRAGTKPGTWEEQISWQHLNIDLLVGKKLISFEKNKAPYILGYSLDITARKRFERELIT 901

Query: 574  AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
            AK+ AE+ +  K  FL+ +SHEIRTP+ A+IG + V+   +         +E    +  S
Sbjct: 902  AKQKAEEAALAKEQFLSTMSHEIRTPMNAVIGMTHVLLENK----PRVDQLENLKILKFS 957

Query: 634  GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693
               +L ++ND+LD +KI++GK+        L E +          A EK I ++ S   N
Sbjct: 958  AQTLLSLINDILDFTKIDAGKVEFEEVLFDLPELIESIQKSFAFTAQEKNIQLKFSTDTN 1017

Query: 694  IPR-ILADLRSVKQIALNILSNAIHFTPSGGQ---IIISTTHTSNEEVILRVRDTGVGMT 749
            IP  ++ D   + Q+  N+++NAI FT  G     + + T +    ++   V+DTGVG+ 
Sbjct: 1018 IPHKVIGDPVRLTQVLTNLMNNAIKFTLKGEVKLMLQLITQNNRQVQLRFTVKDTGVGIP 1077

Query: 750  NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
              + +     F Q       +  GTGLGL + K +++    + ++ S   KG       
Sbjct: 1078 KEKQQIIFDRFTQANPETIRKFGGTGLGLAIVKRLLELQDSQIHLESEENKGAKFYFDL 1136



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 54/547 (9%), Positives = 144/547 (26%), Gaps = 67/547 (12%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID-PNNHIGDLLKRQNTWY-G 145
             D +  L   S  + + +G    +   ++L  ++           I +   +Q  +   
Sbjct: 251 RFDRNHQLIYTSPSIERILGYTLQERKKIKLTQIAHPDDAHWLLQKIQENTAKQQKYSTY 310

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
                  +G   Y+ +++ A   +  N ++ G              +     +  +++F 
Sbjct: 311 VFRARHKQGH--YIWLEVVANAFFDSNGQYEGA--ISSARDVSERMEAEKKLQANEERFR 366

Query: 206 HLHEIKKGHSS-VEKEKYDIFSQQSPPPHLRMKNKVS-----SLTEYYAHKDDVLKTEKY 259
                             ++         L + ++V         +     D  +   K 
Sbjct: 367 LAQNFANIGIWEWTPTNNEMLWSPQTNYLLGLYHQVGKPSFEVFMKAVHPDDQAMVQAKM 426

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
               +       +      +   Y  K      ++      + L    + +     +   
Sbjct: 427 QHSVNTVKKYELEHRVVWQDGTIYWVKSQGNVQRDQYGNVMKMLGVMQNITQRKVDEHKL 486

Query: 320 NLTPET-------VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
             + +T       +D+  I   +   GN+ YAN +F  ++ Y + +            D 
Sbjct: 487 KSSHKTLSDFKMALDEATIVATIDLQGNITYANDNFATISGYATHEL------TGRHYDV 540

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
                       +               + +  + +    +        N          
Sbjct: 541 LIPKKQALSSEALNTVQSGKVWQGET--NNVHKSGKQY-WLKTTIIPFLNDRKLPFQYMI 597

Query: 433 IEPEDVDTRINK--------------RKMEIEVMQLC-------SILEATSD-------- 463
           I  +  D +  +              ++++    +L        S +E   +        
Sbjct: 598 ICMDITDHKKAEETVKLQYLQIEMQNQELQATNEELRQTNEVLFSTMEQLRESEQRLSLA 657

Query: 464 ------GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
                 GI   +     L  ++ + +L+G    D            +       YL  +L
Sbjct: 658 TLSAKMGIWDWDLLNNHLVWDKQMFELYGCKPGDFPNAYDAWEKHLHPDDKKQVYLDSLL 717

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSH 573
           + + +               +  ++   K +               DI+  K+ +  L++
Sbjct: 718 AREGKAEYNTEFRVCHPNGNIRHIKGFGKVVFDDHAQPVRMIGINWDITTQKRAEEDLTN 777

Query: 574 AKKIAEK 580
            K+I E+
Sbjct: 778 QKRILEQ 784



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/316 (9%), Positives = 100/316 (31%), Gaps = 29/316 (9%)

Query: 336 YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIA 395
             +  L Y +PS   +  Y     ++    +   L      D+       +  +      
Sbjct: 253 DRNHQLIYTSPSIERILGYT----LQERKKIK--LTQIAHPDDAHWLLQKIQENTAKQQK 306

Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
            S  +   +  + + + +  +     +   +         +  +    ++K++    +  
Sbjct: 307 YSTYVFRARHKQGHYIWLEVVANAFFDSNGQYEGAISSARDVSERMEAEKKLQANEERFR 366

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP----FTVFLEQNTPSVMNH 511
                 + GI         +  +   + L G   +  + KP    F   +  +  +++  
Sbjct: 367 LAQNFANIGIWEWTPTNNEMLWSPQTNYLLGLYHQ--VGKPSFEVFMKAVHPDDQAMVQA 424

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKN 569
            +   ++   +  LE   +        +  +  +++  + +       M +I++ K +++
Sbjct: 425 KMQHSVNTVKKYELEHRVVWQDGTIYWVKSQGNVQRDQYGNVMKMLGVMQNITQRKVDEH 484

Query: 570 KLSHAKKIAEKESSHKSDF--LARVSHEIRTPLT-------AIIGFSEV-IKNQRFGPLG 619
           KL  + K          +   +A +  +++  +T        I G++   +  + +  L 
Sbjct: 485 KLKSSHKTLSDFKMALDEATIVATI--DLQGNITYANDNFATISGYATHELTGRHYDVLI 542

Query: 620 NPRYI---EYANYIDR 632
             +     E  N +  
Sbjct: 543 PKKQALSSEALNTVQS 558



 Score = 65.8 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 22/154 (14%), Positives = 60/154 (38%), Gaps = 9/154 (5%)

Query: 438 VDTRINKRKMEIEVMQ---LCSIL-EATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
            + +   +  + E+ +   L  IL E +SD I   +R   ++ T+ ++ ++ GY +++  
Sbjct: 218 AEQKEALKNTQKELKKNVILYQILTENSSDLIERFDRNHQLIYTSPSIERILGYTLQERK 277

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553
           +   T     +    +   + E  +   ++    +     K+   + L ++      S+ 
Sbjct: 278 KIKLTQIAHPDDAHWLLQKIQE-NTAKQQKYSTYVFRARHKQGHYIWLEVVANAFFDSNG 336

Query: 554 Y----SLTMHDISEWKQEKNKLSHAKKIAEKESS 583
                  +  D+SE  + + KL   ++      +
Sbjct: 337 QYEGAISSARDVSERMEAEKKLQANEERFRLAQN 370


>gi|27366536|ref|NP_762063.1| Two-component system sensor protein [Vibrio vulnificus CMCP6]
 gi|27358102|gb|AAO07053.1| Two-component system sensor protein [Vibrio vulnificus CMCP6]
          Length = 1072

 Score =  343 bits (880), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 103/378 (27%), Positives = 181/378 (47%), Gaps = 15/378 (3%)

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
           +  +    ++       +I++     +AI++    I   N     ++GY  E+   +   
Sbjct: 149 EIELRTADLKASEELSRTIIDGAPSSVAIVDESLSISLWNSTAQNVYGYSSEEATGENIL 208

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLE---KITLGSTKEEKLLSLR--IIIKKLPFSSC 553
             L  + P  ++H L+  L+L  +  +E        +TKE  ++ +   + I +L  +  
Sbjct: 209 TLLNMSLPDALSHVLSAPLALQNQPDVEGGFFEVETTTKEGHMVPIDLGVSIFELNGACH 268

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
            +L + D++  K  + +L+ AK  AE+    KS FLA +SHEIRTP+ AIIG S +    
Sbjct: 269 AALFLRDVTSRKAVEKELNDAKAKAEEAVEVKSMFLANMSHEIRTPMNAIIGMSHLALKT 328

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
              P    +  +Y + I  S  L+L I+ND+LD SKIE+GK+++      LD+       
Sbjct: 329 DLTP----KQHDYVSKIHSSATLLLGIINDILDFSKIEAGKLSIETTEFYLDDVFHNVSM 384

Query: 674 LVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH- 731
           +    A EK + +        PR +L D   + QI +N+++N++ FT  G +I +S  H 
Sbjct: 385 VTGQKAFEKGLELIFDLPRETPRCLLGDPLRLGQIIINLVNNSVKFTEKG-EITVSVHHI 443

Query: 732 ---TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                  E+  R+ DTG+GMT+ +++     F Q   S   +  GTGLGL + + +V+  
Sbjct: 444 RNVEDLVELEFRISDTGIGMTDKQMKSLFTAFTQADGSTTRKYGGTGLGLSICRRLVELM 503

Query: 789 MGKFYIFSTPAKGTLIEI 806
            G+  + S   KG+    
Sbjct: 504 GGQIRVESEAGKGSHFIF 521


>gi|32471016|ref|NP_864009.1| sensory histidine protein kinase [Rhodopirellula baltica SH 1]
 gi|32396718|emb|CAD71683.1| sensory histidine protein kinase [Rhodopirellula baltica SH 1]
          Length = 1170

 Score =  343 bits (880), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 108/743 (14%), Positives = 240/743 (32%), Gaps = 44/743 (5%)

Query: 92   HGYLKEISEELPKTI-GNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150
             G L +++    K I  N    + G  + ++     +D      + +   ++   +  + 
Sbjct: 311  DGTLTQMNAAGLKMIEANPTANVAGNSVYELIAPEFLDCFREFNERVCSGHSGVLEFDII 370

Query: 151  PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
             + G+  ++  +  A+P+   + E        +           A  +  +++F  L + 
Sbjct: 371  GLRGSRRHM--ETHAVPLSLTSGE---TVQLAVTRDITERKRSEATLRENERRFRALTQA 425

Query: 211  KKGHSSVEKEKYDIFSQQSP-PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
                       +                    S  ++Y H DD  +  K    + E+ S 
Sbjct: 426  TSDIVFRMNADWSEMGMLEGRAFIDSTTEPSRSWLDHYFHPDDQTEVRKVVQNSVEKQSF 485

Query: 270  PEQE-DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV-- 326
             E E     I+            + +++    E+       +     +E ++   +T+  
Sbjct: 486  YELEHRVIRIDGTLGWMHSRAVPILDDAGNVVEWFGAGTDVTERKQSEEFQHRATQTLLT 545

Query: 327  --DKCPIPFFVYSHGN-----LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
              ++ P+  ++             A P+F  +      D  E    + T+      S+  
Sbjct: 546  VIEQSPLGIYLVDGDFKIAQVSLGAGPAFQNVQPVIGRDFEE---VMHTIWPPEFASEAV 602

Query: 380  AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
             I    L   +                 E+              +           +   
Sbjct: 603  RIFRHTLKTGEPYVSPGLTEKRKDLGETESYEWQVNRITLADGSYGVVCYFF----DTTR 658

Query: 440  TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
             +     +    ++   + +  S         G     N+   +  G   E++    +  
Sbjct: 659  LQQAADALRESEVRFRMLADNMSQLAWTCCDLGECNWYNQRWYEYTGCTFEEMQGWGWRQ 718

Query: 500  FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YS 555
                +    +   +    +    +  E       ++ +          +         + 
Sbjct: 719  VHHPDHVDRVVERIQRAATAG--EVWEDTFPLKGRDGQYRWFLSRAVPIRDEEGTIVRWF 776

Query: 556  LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
             T  D++E ++ +  L             K +FLA ++HE+R PL  I    +++     
Sbjct: 777  GTNTDVNELRETQQLLHD-------ADRRKDEFLAMLAHELRNPLAPIRSGLDLLA---- 825

Query: 616  GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
                +  + +    +      V+ +V+DLLD+S+I  GK+ L  E +     V +AI  V
Sbjct: 826  -IADDDEHRDVVRVMQEQVTHVVRLVDDLLDVSRIMRGKVELRKERIEFQSTVRKAIDAV 884

Query: 676  QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
            +         +  +       + AD   + Q+  N+LSNA  +    G I +S +   NE
Sbjct: 885  RDVIESHGHSLTITLPEKTVWLEADPVRIVQVLENLLSNATKYMDGSGAIELSASVK-NE 943

Query: 736  EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
             + ++++D G+G+    L    + F Q   S      G G+GL L K +++ + G  +  
Sbjct: 944  SLFIQIKDEGIGIDQEFLPNIFELFAQSDRSLDRSKGGLGIGLTLVKQLLEMHGGNIHAE 1003

Query: 796  S-TPAKGTLIEIIFPLYDTSHPH 817
            S    KG+   I  P+     P+
Sbjct: 1004 SDGLGKGSSFHIELPIASPPEPN 1026



 Score =  112 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 49/410 (11%), Positives = 118/410 (28%), Gaps = 9/410 (2%)

Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE 245
           +   ++  RA  K++  +   L  +  G S+ ++     F        LR  + V  L +
Sbjct: 30  IAESNDQRRAHLKQVLDRQHDLVTVDGGKSAWQQLTQGRFDAVVAGFDLREVSGVKLLAQ 89

Query: 246 YYAHKDDVLKT-EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
             AH +             S       Q+ F     +          L            
Sbjct: 90  TRAHAELRGVPFVLVADEASPIDPTTWQQVFEFGRSDILCSPINEHELLARVDSIIRRAR 149

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364
            +N  +      +          +     +  S   + Y + + + +   KS+ D     
Sbjct: 150 VKNESADMLQRQKSRLQMALLASRMVAVEWDISADTVLY-SENAIEIFGIKSLSDHATGP 208

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
               L       D+       +  + +       +   I+ +    + +    +   +  
Sbjct: 209 TARKL----VHPDDIDTVEKTIRNTLQGSREFQTQFRIIRPDNGEIVWIEERGYVATDAS 264

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
            +      +  +    R  ++ ++     L +I + T + I ++  +G +   N A  K+
Sbjct: 265 GKPTKLIAVAVDITARRNAEQAIQEREHYLQAIFDTTPECIKVVKSDGTLTQMNAAGLKM 324

Query: 485 FGY-PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
               P  ++        +          +   + S      LE   +G     + +    
Sbjct: 325 IEANPTANVAGNSVYELIAPEFLDCFREFNERVCS-GHSGVLEFDIIGLRGSRRHMETHA 383

Query: 544 IIKKLPFSSCY-SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
           +   L            DI+E K+ +  L   ++     +   SD + R+
Sbjct: 384 VPLSLTSGETVQLAVTRDITERKRSEATLRENERRFRALTQATSDIVFRM 433


>gi|251800212|ref|YP_003014943.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           sp. JDR-2]
 gi|247547838|gb|ACT04857.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           sp. JDR-2]
          Length = 614

 Score =  343 bits (880), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 79/395 (20%), Positives = 146/395 (36%), Gaps = 23/395 (5%)

Query: 423 QFPENMPQNGIEPEDVDTRINKRKM-EIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
              E    +    +          + E E  +L SIL   SDG+   +  G ++  NR  
Sbjct: 236 GDDEIGRLSSAFNDMTIRLKEALSVNEEENEKLASILSNMSDGVIAADENGKVIVWNRRS 295

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
            ++      +         L           L       +     +       EE +L +
Sbjct: 296 QEMLDVRTCE--GCSLPELLGMPVQK--YRELQNGREQTVILPRNEEEADMDDEEGILRV 351

Query: 542 RIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                             + D++E ++ +                +  F+A VSHE+RTP
Sbjct: 352 TFTPIHRRDKGITGTIAVLQDVTEQEKLE--------------QSRRQFVANVSHELRTP 397

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           LT I  ++E + +             +   I      ++ +V DLL +S+++S +  L  
Sbjct: 398 LTTIKSYAEALNDGALDE--RELSERFVGVIRNETERMIRLVTDLLHLSRLDSNQAPLRR 455

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719
              ++ E + E          +K IL       ++     D   + Q+  N++SNAI +T
Sbjct: 456 RKTNIHEMLDEVTDRFSFQLRQKSILATIIVDRDLKSAWLDRDQIDQVLDNLISNAIKYT 515

Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
             GG I +S        + + V+DTG+G+   +L +    F ++  ++     GTGLGL 
Sbjct: 516 LEGGAIELSAHKQDAATIAISVKDTGIGIPKKDLSRIFDRFYRVDKARSRNMGGTGLGLS 575

Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           +A+ +V A+ G   + S    GT +    P+    
Sbjct: 576 IAREIVKAHGGTISLKSELNDGTTVTFTLPVLQEE 610


>gi|114048722|ref|YP_739272.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-7]
 gi|113890164|gb|ABI44215.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-7]
          Length = 1118

 Score =  343 bits (880), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 104/517 (20%), Positives = 207/517 (40%), Gaps = 23/517 (4%)

Query: 311 LSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
           LS      E+     ++        +   G +   N +   +  +   + +         
Sbjct: 270 LSLLAKSNEDRMRAMMNTAVDGIITIDGQGIIVNVNKAVTTILGWSPAELLGENV---KK 326

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
           +    +  ++         +    I  + R    Q    +S+ +                
Sbjct: 327 IVPESIRPHHDGYLARYINTREAQIIGTGREVEAQHKAGHSVPVRLSIGHVMQGKAH--Y 384

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII--NREGI-ILSTNRAVSKLFG 486
             G   +       +++++    +  S++     GIA    + EG  ++  + AV  + G
Sbjct: 385 FVGFLSDLSLRNEMEQELKNNEAKFRSLITNIP-GIAYRCKSTEGWPMVFISEAVLNITG 443

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
           YP ED        F            +  I +     T          + ++  L     
Sbjct: 444 YPAEDFELPHPKRFFSDLYYP---DDIESIYAQAQPPTFSMEYRIIRADGEVRWLFEHGN 500

Query: 547 KLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
            +   +         + DI+E K  +  L  AK  AE+ ++ ++ FLA +SHEIRTP+ A
Sbjct: 501 YILDETSNEVWIDGFLMDITERKVMEQDLVTAKNNAEQAAAARAAFLANMSHEIRTPMNA 560

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           IIGFS+++         +    +  + I+RS   ++ ++ND+LD +K++ GK+ L     
Sbjct: 561 IIGFSDILLESVL----DNEQHKQLSTINRSAKSLMHLLNDVLDSAKLDKGKLELENRVF 616

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPS 721
            L + +   IS + L A ++R+ +    A ++    +     ++Q+ +N++ NA+ FT  
Sbjct: 617 CLTDEIDTVISTLWLQAKKQRLSLEVDIAPSMAANFIGSPERIRQVLINLIGNAVKFTCE 676

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           G ++ +S    ++  V   + DTG+GMT  +L +  + F Q   S   +  GTGLG  ++
Sbjct: 677 G-KVTVSVFPQNDNLVTFEIIDTGIGMTPEQLNRVFEAFAQADASMSRKYGGTGLGTTIS 735

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
           K +V+   G+    ST  +G+      PL  +S P +
Sbjct: 736 KQLVELMGGQLEAESTLGQGSTFRFTIPLQPSSEPLE 772



 Score = 45.4 bits (106), Expect = 0.040,   Method: Composition-based stats.
 Identities = 22/243 (9%), Positives = 69/243 (28%), Gaps = 20/243 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP--NNHIGDLLKRQNTWY-- 144
           ID  G +  +++ +   +G    +++G  +  +     I P  + ++   +  +      
Sbjct: 295 IDGQGIIVNVNKAVTTILGWSPAELLGENVKKIV-PESIRPHHDGYLARYINTREAQIIG 353

Query: 145 --GKTTLWPIEGTNLYVPIDLA-ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
              +       G +  VP+ L+    +  +   F GF     +    + N+     K  +
Sbjct: 354 TGREVEAQHKAGHS--VPVRLSIGHVMQGKAHYFVGF-----LSDLSLRNEMEQELKNNE 406

Query: 202 KKFSHLHEIKK--GHSSVEKEKYDIFSQQSPPPHLR-MKNKVSSLTEYYAHKDDVLKTEK 258
            KF  L        +     E + +        ++     +   L        D+   + 
Sbjct: 407 AKFRSLITNIPGIAYRCKSTEGWPMVFISEAVLNITGYPAEDFELPHPKRFFSDLYYPDD 466

Query: 259 YPL--LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
                  ++  +   +      +       ++   + + +             +     +
Sbjct: 467 IESIYAQAQPPTFSMEYRIIRADGEVRWLFEHGNYILDETSNEVWIDGFLMDITERKVME 526

Query: 317 EGE 319
           +  
Sbjct: 527 QDL 529


>gi|188993224|ref|YP_001905234.1| Two-component system sensor histidine kinase-response regulator
           hybrid protein [Xanthomonas campestris pv. campestris
           str. B100]
 gi|167734984|emb|CAP53196.1| Two-component system sensor histidine kinase-response regulator
           hybrid protein [Xanthomonas campestris pv. campestris]
          Length = 702

 Score =  343 bits (879), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 107/572 (18%), Positives = 208/572 (36%), Gaps = 44/572 (7%)

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
                P  +  H    +            + S  S E +   + P      D G  +  E
Sbjct: 2   RARCAPADDIGHGFIRSSSALASPVDPDSSTSALSPESIVAASAPVAEPTLDSG--MYRE 59

Query: 325 TVDKCPIPF----FVYSHGN-----LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
             D     F     V+             N +F   T    V ++       ++      
Sbjct: 60  IFDNVDAGFCIIDMVFEGNRPTDYIFRVTNEAFQRYTGLSEVANV-------SMRSLRAD 112

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
            +                I    +   +           +         PE      +  
Sbjct: 113 HEQEWFDRYGHVALTGNRIHFEMQAKALNR--------WYSVDAFRVGPPELKRVAVLFM 164

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
           +  + +  +R++     +  ++ +     + +++ +G++   N A  + FG  +      
Sbjct: 165 DITERKRVERELAESEARFSALADGLPMPVWVLDAQGVVRFVNSAYGEFFGVDISSGTVS 224

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555
            ++  L      V         SL+ ++ L  +      + +   + +       +    
Sbjct: 225 AWSELLHPEDVPVFQ--FELAASLEEQRGLHALVRARRHDGQWRWIEMTATPRYSADGRF 282

Query: 556 LTMH----DISEWK-------QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
           + +     D++E +       Q       A+  AE  +  K +FLA +SHE+RTPLT I+
Sbjct: 283 IGLAGSSPDVTEQREIALAREQLLESERSARNEAESMARLKDEFLATLSHELRTPLTTIL 342

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           G+SE++  +     G+P Y    + I  S      +++D+LD+S +  GK+ L  E + L
Sbjct: 343 GWSELLLQRV--EEGHPNYKG-LSVIASSARAQKRLISDMLDLSSMLLGKVQLEVESLDL 399

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724
            E V EA+   +  A  K  +++         +L D   ++Q+  N+LSNAI FTP+ G+
Sbjct: 400 AEQVREALGAQEPVAEGKDQVLQLHVPPTPCLVLGDATRLQQVFWNLLSNAIKFTPAHGR 459

Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
           I ++  H  +   I+ VRD+G G+ +  L      F Q   +   +  G GLGL + + +
Sbjct: 460 IDVTVEH-DDGHFIVSVRDSGDGIASEFLPHLFGRFRQADATTTRQHGGLGLGLAIVQQL 518

Query: 785 VDANMGKFYIFS-TPAKGTLIEIIFPLYDTSH 815
           V+ + G+    S    KG    +  P +    
Sbjct: 519 VEMHGGQVGATSGGRGKGATFTVRLPEHQPDQ 550



 Score = 73.5 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 48/462 (10%), Positives = 122/462 (26%), Gaps = 48/462 (10%)

Query: 54  FTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM 113
           F D  +         +SE  F        +   W +DA G ++ ++    +  G      
Sbjct: 163 FMDITERKRVERELAESEARFSALADGLPMP-VWVLDAQGVVRFVNSAYGEFFGVDISSG 221

Query: 114 IGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172
                 ++     +      +   L+ Q   +        +G   +  I++ A P YS +
Sbjct: 222 TVSAWSELLHPEDVPVFQFELAASLEEQRGLHALVRARRHDG--QWRWIEMTATPRYSAD 279

Query: 173 REFSGFRGFG-IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231
             F G  G    V   R     R      ++   +  E        E         ++P 
Sbjct: 280 GRFIGLAGSSPDVTEQREIALAREQLLESERSARNEAESMARLKD-EFLATLSHELRTPL 338

Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLN---QYTKKQY 288
             +   +++        H +    +       +++  + +  D  ++ L       +   
Sbjct: 339 TTILGWSELLLQRVEEGHPNYKGLSVIASSARAQKRLISDMLDLSSMLLGKVQLEVESLD 398

Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSF 348
                  +  + E ++      L  +      L      +    F+      + +  P+ 
Sbjct: 399 LAEQVREALGAQEPVAEGKDQVLQLHVPPTPCLVLGDATRLQQVFWNLLSNAIKF-TPAH 457

Query: 349 LLLTKYKSVDDI-------EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401
             +      DD        +   G+++                   +     +  +    
Sbjct: 458 GRIDVTVEHDDGHFIVSVRDSGDGIASEFLPHLFGRFRQADATTTRQHGGLGLGLAIVQQ 517

Query: 402 TIQWNREN-----------SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR----K 446
            ++ +              +     +P  + +Q      +             +     +
Sbjct: 518 LVEMHGGQVGATSGGRGKGATFTVRLPEHQPDQAKRPRRELRRRLMSEQIVEARALNGLR 577

Query: 447 MEIEVMQ------LCSILE----------ATSDGIAIINREG 472
           +     Q      L  +LE          + +D +A+I+  G
Sbjct: 578 LLAVEDQPDMLDYLRRLLEEQGAEVVTAGSATDALALIDHRG 619



 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/239 (8%), Positives = 58/239 (24%), Gaps = 11/239 (4%)

Query: 228 QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287
                     ++V++++      D   +        +   +    E         Y+   
Sbjct: 89  NEAFQRYTGLSEVANVSMRSLRADHEQEWFDRYGHVALTGNRIHFEMQAKALNRWYSVDA 148

Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANP 346
           +        + +  ++       +     E E       D  P+P +V    G + + N 
Sbjct: 149 FRVGPPELKRVAVLFMDITERKRVERELAESEARFSALADGLPMPVWVLDAQGVVRFVNS 208

Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
           ++                  S LL    +          L           A     + +
Sbjct: 209 AYGEFFGVDISS--GTVSAWSELLHPEDVPVFQFELAASLEEQRGLHALVRA-----RRH 261

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI---NKRKMEIEVMQLCSILEATS 462
                 +      + +     +   G  P+  + R     + ++        +  E+ +
Sbjct: 262 DGQWRWIEMTATPRYSADGRFIGLAGSSPDVTEQREIALAREQLLESERSARNEAESMA 320


>gi|115523964|ref|YP_780875.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas
           palustris BisA53]
 gi|115517911|gb|ABJ05895.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas
           palustris BisA53]
          Length = 771

 Score =  343 bits (879), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 136/680 (20%), Positives = 251/680 (36%), Gaps = 71/680 (10%)

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY 246
                 P  L   L             H  V      + ++  P   +   +++  +   
Sbjct: 92  ADRTATPGQLQGALQGLIPAWGFAAGRHIIVVDANQRVIARVPPNATIGDASRILEVLGA 151

Query: 247 YAHKDDVLKTEKYPLLTSE-----------ESSLPEQEDFHTINLNQYTKKQYFGTLQNN 295
                          LT               +LP Q      +L          ++  +
Sbjct: 152 TQPLTTSGLQSGVVDLTLPSGRTIHAVQRIVRALPGQVVVIQEDLGSIWGSNTALSITLS 211

Query: 296 SKESFEYL--------SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH--GNLFYAN 345
           +   F  L                 A  D         +D      + +    G + + +
Sbjct: 212 ATTGFVVLILGFAFHWQSTRAREGDAINDAVRGRIDTALDSGRCGLWDWDLSRGRI-FWS 270

Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405
            S   +   +S  D+   G ++ L+ +  +        ++L       I        +  
Sbjct: 271 RSMFTMLGLESRSDLLTFGEVNALVKSDDIDLFAIANQLIL-----GEITQIDHTFRMLH 325

Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465
              + + +              +   GI  +  + +    +     ++L   +E   +  
Sbjct: 326 ANGHWIWLRVRCEIGEGGGDAGLHLIGIAVDITEHKSLAERTVEADLRLRDAIETIPEAF 385

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
            + + E  ++  N    +L   P   +     +   +E  +        T        Q 
Sbjct: 386 VLWDAENRLVLCNSHFQRLHQLPDSAVTPGTSYDTVIEVGSMP---EARTRSPECGGAQL 442

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA---------- 574
             +         + L +    ++      Y     DI+  K  ++KL             
Sbjct: 443 GARTFEAQLDNGQWLHIS---ERRTKDGGYVAVGTDITRIKDHEHKLIDNDLRLRATVAD 499

Query: 575 -------------------------KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                                    K  AE  +  KS FLA +SHE+RTPL AIIGFSE+
Sbjct: 500 LKISQVKLERQAVQLADLARKYAEEKYRAEDANQTKSKFLANMSHELRTPLNAIIGFSEI 559

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           + +  FG LG+ +Y EY + I  SG+ +L+++ND+LD+SKIE+G+M L  EP+     +S
Sbjct: 560 MGSGMFGRLGSEKYQEYCHDILTSGHYLLEVINDILDMSKIEAGRMKLDLEPLDFAGTLS 619

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
           E++ +V   A  K++ +       I  ++AD R+VKQI +N+LSNA+ FTP GGQI +  
Sbjct: 620 ESLRVVSGRAENKQLELHADIEQGI-SVIADRRAVKQILVNLLSNAVKFTPEGGQITVRG 678

Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
              ++  ++L + DTG+G+    L K  +PF Q+ +       G+GLGL +AK++ + + 
Sbjct: 679 RARAD-SIVLMIADTGIGIAPQSLRKLGQPFEQVESQLTKSYHGSGLGLAIAKSLTNLHG 737

Query: 790 GKFYIFSTPAKGTLIEIIFP 809
           G   + S   +GT++ ++ P
Sbjct: 738 GSMRLRSQLGQGTVVRLVLP 757


>gi|328470886|gb|EGF41797.1| putative sensory box sensor histidine kinase/response regulator
           [Vibrio parahaemolyticus 10329]
          Length = 873

 Score =  343 bits (879), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 100/376 (26%), Positives = 172/376 (45%), Gaps = 12/376 (3%)

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
           +  ++ QL  + E   D I I + +G I   N A  +L  Y +E+++ K     L+    
Sbjct: 234 LSAKISQLAEVAEHARDTIIITHPDGTIAWVNSAFEQLTEYSLEEVVGKSPGELLQGEDT 293

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDIS 562
                 L    S+     +    L  TK  +   + + +  +   +     +     DI+
Sbjct: 294 DANTVALLS-QSVRSHSPVRVEILNYTKSRRPYWVELELSPVFDENGELLRFIAVERDIT 352

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           + ++ + +LS A   ++K +  KS+FLA +SHEIRTP+ AI+G SE++            
Sbjct: 353 DRREMEKRLSSALDKSKKATQAKSEFLANMSHEIRTPMNAIMGISEILLENENRREP--- 409

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             E    + +S N ++ I+ND+LD SK+E+GK+ L  E   L   V    +L    A++K
Sbjct: 410 -RELLLLLHKSANNLVTIINDILDYSKVEAGKLTLVEEEFDLRSLVESCTALCAYQADKK 468

Query: 683 RILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
            + +       +  ++  D   + QI LN++ NA+ FT  G  +++    + +      V
Sbjct: 469 NLKLLVDMPLAMNTVVVGDKGRINQILLNLIGNAVKFTDEG-HVLLKVRESEHGF-DFSV 526

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            DTG+G+    L   M  F Q+  S   R EGTGLGL ++K ++    G+  + S   KG
Sbjct: 527 SDTGIGIPEDRLTHIMDKFEQVDTSATRRHEGTGLGLAISKRLISMYNGELCVHSDFGKG 586

Query: 802 TLIEIIFPLYDTSHPH 817
           +       L   S PH
Sbjct: 587 SCFSFSLQLPKRSQPH 602



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 12/140 (8%), Positives = 38/140 (27%), Gaps = 6/140 (4%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTWYGKTT 148
             G +  ++    +       +++G    ++      D N    +   ++  +    +  
Sbjct: 257 PDGTIAWVNSAFEQLTEYSLEEVVGKSPGELLQGEDTDANTVALLSQSVRSHSPVRVEIL 316

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
            +       +V ++L+  P++  N E    R   +        +          K     
Sbjct: 317 NYTKSRRPYWVELELS--PVFDENGEL--LRFIAVERDITDRREMEKRLSSALDKSKKAT 372

Query: 209 EIKKGHSSVEKEKYDIFSQQ 228
           + K    +    +       
Sbjct: 373 QAKSEFLANMSHEIRTPMNA 392



 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 48/134 (35%), Gaps = 7/134 (5%)

Query: 321 LTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
              E  +       + +  G + + N +F  LT+Y   + +  + G   LL      D +
Sbjct: 240 QLAEVAEHARDTIIITHPDGTIAWVNSAFEQLTEYSLEEVVGKSPG--ELLQG---EDTD 294

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
           A    +L +S R+       +     +R     +        ++  E +    +E +  D
Sbjct: 295 ANTVALLSQSVRSHSPVRVEILNYTKSRRPY-WVELELSPVFDENGELLRFIAVERDITD 353

Query: 440 TRINKRKMEIEVMQ 453
            R  ++++   + +
Sbjct: 354 RREMEKRLSSALDK 367


>gi|296137724|ref|YP_003644968.1| sensory box histidine kinase/response regulator [Salinibacter ruber
            M8]
 gi|295981893|emb|CBH22851.1| sensory box histidine kinase/response regulator [Salinibacter ruber
            M8]
          Length = 1501

 Score =  343 bits (879), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 132/748 (17%), Positives = 250/748 (33%), Gaps = 46/748 (6%)

Query: 89   IDAH-GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
            ID   G +++ +    +  G    +   + + D++D+   +      D  +         
Sbjct: 454  IDPESGAIRDANASAAEFYGYTDEEWERLHVQDLNDLPADEVAARRADA-EGGEQNRFIF 512

Query: 148  TLWPIEGTNLYVPIDLAALPIYSRNREFSG-FRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                  G      +++ + PI     E +G    F I+H      + R   +R  +KF  
Sbjct: 513  PHRLKSGEAR--TVEVRSTPI-----EVNGTALLFSIIHDITAREEAREKLRRSRRKFKT 565

Query: 207  LHEIKKGHSSVEKEKYDIFSQQSPPPHLRM--KNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
            L E       +   +  I         L    + ++   T    H  DVL      L   
Sbjct: 566  LFETSHDAIFLIDPEGHILDVNERATELFQMDRERLLKKTVPDLHPPDVLDRVASALEQV 625

Query: 265  EESSLPEQEDFHTINLNQYTKKQYFG---TLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
            E       E     +     +         + + +                      E  
Sbjct: 626  EAGESVRLEIPIRRSDGTRLQTDISATPMQIGDRTLVQAVMRDITERKEAEEQLRRSEER 685

Query: 322  TPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
                V+    P  +   G + Y NP+   +   ++ ++I            P + +    
Sbjct: 686  WRRLVESNRDPIQITVDGTIRYINPAGARIFGAEAPEEIIGRSPTD-FAAKPDVLEKLRA 744

Query: 382  KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
            +   L R + T       +   + + E    +++    +               +  + R
Sbjct: 745  RNRQLARGEPTE-PMEHTIQ--RLDGEERTVVSYAQPIEYKGESAAQTVI---RDVTEQR 798

Query: 442  INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV-F 500
              + ++         +L A    +AI   EG                   I         
Sbjct: 799  EAEEELRHLKDFYEQVLNAMPIDLAIFGPEGRYEYVTPGAISDPERREHVIGMTDVEYAR 858

Query: 501  LEQNTPSVMNHYLTEILS-LDLRQTLEKITLGSTKEE---KLLSLRIIIKKLPFSSCYSL 556
            +  N        L  I      R+T +               +     + +         
Sbjct: 859  VRGNDVDAARRRLETIRRVARTRETEQFEETIEDHNGNPQHFIRFVTPVVQDGAVVNVLG 918

Query: 557  TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
               +I++ KQ + KL  AK+ AE   + K  FLA +SHE+RTPL A++G ++++      
Sbjct: 919  YGLEITQRKQTEMKLRDAKEQAEASLAAKERFLATMSHEVRTPLNAVLGMAQLLARTDL- 977

Query: 617  PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
                     Y   I  SGN +L +++ +LD +K+E+G+++L                +++
Sbjct: 978  ---TEDQRSYLQSIRFSGNTLLTLLDTVLDFAKLEAGEVDLEQVAFDPVRLAHHVRDMLR 1034

Query: 677  LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIII------ST 729
              A E  +  R      +P  ++ D   V QI  N+ SNA+ FT  G  +I       S 
Sbjct: 1035 SKAKESDLDFRIEADPQLPTSVVGDAARVGQILTNLGSNALKFTDDGSVVICVEEGPASA 1094

Query: 730  THTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPN----SQQIRGEGTGLGLPLA 781
                + E    +  RV DTG+G+   + ++    F Q       +++   EGTGLGL + 
Sbjct: 1095 APAEDSEAPTWITFRVEDTGIGIPPEQRDRIFGHFNQADTDTGETRKETREGTGLGLAIV 1154

Query: 782  KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            + +VD   G   + STP +G++  +  P
Sbjct: 1155 QTLVDQMGGTIDLESTPGEGSVFTVRLP 1182



 Score =  160 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 41/509 (8%), Positives = 128/509 (25%), Gaps = 24/509 (4%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            +  D  G    ++    +  G    +++G     +    H +   H  +    +     
Sbjct: 325 IYRCDRDGCFTYVNPVATEVTGYAHDELVGQHFTALVHPDHRERLVHFYENQINEEIPDT 384

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +     +        +      +   +    G +   I              +  + +F 
Sbjct: 385 RREFPIVTAEGDKRWVSQQVQLVR-EDGAVVGVQ--AIARDITERKRAVEALQESEARFR 441

Query: 206 HLHEIKKGHSSVEKEKY---DIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
            + E       +   +       +  +   +     +   L     +     +       
Sbjct: 442 IMFERHSAPMLLIDPESGAIRDANASAAEFYGYTDEEWERLHVQDLNDLPADEVAARRAD 501

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL--SHRNHPSLSAYFDEGEN 320
                           +    T +     ++ N       +                   
Sbjct: 502 AEGGEQNRFIFPHRLKSGEARTVEVRSTPIEVNGTALLFSIIHDITAREEAREKLRRSRR 561

Query: 321 LTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
                 +      F +   G++   N     L +      ++                + 
Sbjct: 562 KFKTLFETSHDAIFLIDPEGHILDVNERATELFQMDRERLLKKT-------VPDLHPPDV 614

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
             +            +    +   + +      +         Q  +      +  +  +
Sbjct: 615 LDRVASALEQVEAGESVRLEIPIRRSDGTR---LQTDISATPMQIGDRTLVQAVMRDITE 671

Query: 440 TRINKRKMEIEVMQLCSILEATSDGI-AIINREGIILSTNRAVSKLFGYP-VEDILRKPF 497
            +  + ++     +   ++E+  D I   ++  G I   N A +++FG    E+I+ +  
Sbjct: 672 RKEAEEQLRRSEERWRRLVESNRDPIQITVD--GTIRYINPAGARIFGAEAPEEIIGRSP 729

Query: 498 TVFLE-QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556
           T F    +    +     ++   +  + +E        EE+ +       +    S    
Sbjct: 730 TDFAAKPDVLEKLRARNRQLARGEPTEPMEHTIQRLDGEERTVVSYAQPIEYKGESAAQT 789

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHK 585
            + D++E ++ + +L H K   E+  +  
Sbjct: 790 VIRDVTEQREAEEELRHLKDFYEQVLNAM 818



 Score =  116 bits (290), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 48/427 (11%), Positives = 116/427 (27%), Gaps = 41/427 (9%)

Query: 162 DLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEK 221
           DL  + ++ RN E  G      +H+        A  + L    + +  ++   S      
Sbjct: 43  DLEGVAVWRRNEEGEG------LHLLHATPASYAEAEALPADHALVQRLRADASVSVHAS 96

Query: 222 YDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLN 281
              F   +     R     +                + P                 +   
Sbjct: 97  DPEFESLATGRAARGGALAALRLGDLGFLGLHDSRREAPFPP--RELRQLDPVLVKLEQA 154

Query: 282 QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN- 340
               + +   L+   +                      +     +        + +    
Sbjct: 155 LRGGRSH-QQLEEEVER---------RVRTEEALRRSRSQLSALIQNLQDAVLLENEDRE 204

Query: 341 LFYANPSFLLLTKYK-SVDDIEIAG------GLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393
           L  AN +F  L +     + +  A           L   P    +     +         
Sbjct: 205 LLLANQAFCDLFEIPKPPEALPGADCGAVAEAAEDLFADPTALSDRVESILTA----GEP 260

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
           ++A     T+  N    L      +   +   E         +  + R    +++     
Sbjct: 261 VSAE----TLHLNDGRILE---RDYVPIDLDDETTGHLWKYRDVTEQRRLDARLQERERA 313

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
              ++E+ SD I   +R+G     N   +++ GY  ++++ + FT  +  +    + H+ 
Sbjct: 314 YRRLVESASDIIYRCDRDGCFTYVNPVATEVTGYAHDELVGQHFTALVHPDHRERLVHFY 373

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNK 570
              ++ ++  T  +     T E     +   ++ +              DI+E K+    
Sbjct: 374 ENQINEEIPDT-RREFPIVTAEGDKRWVSQQVQLVREDGAVVGVQAIARDITERKRAVEA 432

Query: 571 LSHAKKI 577
           L  ++  
Sbjct: 433 LQESEAR 439



 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 44/383 (11%), Positives = 116/383 (30%), Gaps = 18/383 (4%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + ID  G++ +++E   +       +++   + D+     +D      + ++   +   
Sbjct: 574 IFLIDPEGHILDVNERATELFQMDRERLLKKTVPDLHPPDVLDRVASALEQVEAGESVRL 633

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +  +   +GT   +  D++A P+   +R         ++       +     +R ++++ 
Sbjct: 634 EIPIRRSDGT--RLQTDISATPMQIGDRTLVQA----VMRDITERKEAEEQLRRSEERWR 687

Query: 206 HLHEIKKGHSSVEKEK---YDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK--TEKYP 260
            L E  +    +  +    Y   +          +  +      +A K DVL+    +  
Sbjct: 688 RLVESNRDPIQITVDGTIRYINPAGARIFGAEAPEEIIGRSPTDFAAKPDVLEKLRARNR 747

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ--NNSKESFEYLSHRNHPSLSAYFDEG 318
            L   E + P +     ++  + T   Y   ++    S                      
Sbjct: 748 QLARGEPTEPMEHTIQRLDGEERTVVSYAQPIEYKGESAAQTVIRDVTEQREAEEELRHL 807

Query: 319 ENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
           ++   + ++  PI   ++   G   Y  P    ++  +  + +     +          D
Sbjct: 808 KDFYEQVLNAMPIDLAIFGPEGRYEYVTPGA--ISDPERREHVIGMTDVEYARVRGNDVD 865

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
               +   + R  RT             N      + F+     +     +   G   E 
Sbjct: 866 AARRRLETIRRVARTRETEQFEETIEDHNGNPQHFIRFVTPVVQDGA--VVNVLGYGLEI 923

Query: 438 VDTRINKRKMEIEVMQLCSILEA 460
              +  + K+     Q  + L A
Sbjct: 924 TQRKQTEMKLRDAKEQAEASLAA 946



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/192 (13%), Positives = 63/192 (32%), Gaps = 11/192 (5%)

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
                +  +  +             +E E       +  +     QL ++++   D + +
Sbjct: 139 RELRQLDPVLVKLEQALRGGRSHQQLEEEVERRVRTEEALRRSRSQLSALIQNLQDAVLL 198

Query: 468 INREGIILSTNRAVSKLFGYP--VEDILRKPFTVFLE-----QNTPSVMNHYLTEILSLD 520
            N +  +L  N+A   LF  P   E +         E        P+ ++  +  IL+  
Sbjct: 199 ENEDRELLLANQAFCDLFEIPKPPEALPGADCGAVAEAAEDLFADPTALSDRVESILTAG 258

Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-CYSLTMHDISEWKQEKNKLSHAKKIAE 579
              + E        + ++L    +   L   +  +     D++E ++   +L   ++   
Sbjct: 259 EPVSAE---TLHLNDGRILERDYVPIDLDDETTGHLWKYRDVTEQRRLDARLQERERAYR 315

Query: 580 KESSHKSDFLAR 591
           +     SD + R
Sbjct: 316 RLVESASDIIYR 327


>gi|262164440|ref|ZP_06032178.1| hypothetical protein VMA_000882 [Vibrio mimicus VM223]
 gi|262026820|gb|EEY45487.1| hypothetical protein VMA_000882 [Vibrio mimicus VM223]
          Length = 1576

 Score =  343 bits (879), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 104/384 (27%), Positives = 173/384 (45%), Gaps = 20/384 (5%)

Query: 448  EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
            E EV++  ++LE++ +   I++  GII   N    K+FGY  +++   P       +  S
Sbjct: 696  EKEVLRFKALLESSPEATLIVDTSGIIKMVNEEAEKVFGYGRDELEGYPMHRLFLHDLES 755

Query: 508  VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS--LTMHDISEWK 565
                +          Q +E   +    +E    + I    +         +++ +I++  
Sbjct: 756  ARAKHAQWYELRPGNQRIE---IAVRSDETEFPVEISSSSVQMDDGLLISVSIRNITDRL 812

Query: 566  QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
              +  L  A + AE+ +  KS FLA  SHEIRTPL AI+G + ++ ++            
Sbjct: 813  AFEQTLKKALRDAEQATQAKSVFLANTSHEIRTPLNAILGLTHLLSDESL----TESQHR 868

Query: 626  YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
              + I  SG  +L IVND+LD+SKIE+ +M L   P+ L E + E  S+    A  K + 
Sbjct: 869  LVDKIGISGKSLLGIVNDVLDLSKIEANEMILEALPLDLKEFLEEVASVFSTQAEAKNLD 928

Query: 686  IRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH--------TSNEE 736
             +     ++P  ++AD   ++QI  N+LSNA+ FT  G  I +                 
Sbjct: 929  FKLEMGADLPHWVIADSMRLRQILTNLLSNALKFTSVG-HIALHAEVIDKFIWKGAEKNI 987

Query: 737  VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
            V   + DTG+G++    ++  KPF Q   S   R  GTGLGL +   ++    GK  + S
Sbjct: 988  VRFSITDTGIGISEEAQKRLFKPFSQADTSTSRRFGGTGLGLSIVHKLLGLMEGKIGVES 1047

Query: 797  TPAKGTLIEIIFPLYDTSHPHDCI 820
            +  +G+      PL   S   D I
Sbjct: 1048 SEGQGSTFWTEMPLQTLSD-EDII 1070



 Score = 41.2 bits (95), Expect = 0.71,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 41/141 (29%), Gaps = 2/141 (1%)

Query: 169 YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228
               REF G  GFG +   RV     A      ++    +   +  +  + +++ I    
Sbjct: 83  RDIEREFPGALGFGFIR--RVPVAQEADFVAAARRDDFPNFTIRTLTPHDGDRFIIQYIY 140

Query: 229 SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288
              P+L+                     E+ P LT+  + +          L        
Sbjct: 141 PEKPNLQAIGLDIGSETNRRKAALASVREQQPYLTAPITLVQADSKPRRGVLILLPVYPS 200

Query: 289 FGTLQNNSKESFEYLSHRNHP 309
              L+  ++    +L     P
Sbjct: 201 RMELKTPAEREKYFLGWAYAP 221


>gi|95928336|ref|ZP_01311084.1| PAS/PAC sensor signal transduction histidine kinase [Desulfuromonas
           acetoxidans DSM 684]
 gi|95135607|gb|EAT17258.1| PAS/PAC sensor signal transduction histidine kinase [Desulfuromonas
           acetoxidans DSM 684]
          Length = 867

 Score =  343 bits (879), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 101/519 (19%), Positives = 199/519 (38%), Gaps = 37/519 (7%)

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSVDDIEIAGGL 366
                    E E      +D     F+ +         +  +  +  Y+  +        
Sbjct: 374 RKIAEQLIYEKEERLRLALDGSQDGFWDWDVSTGSNIVDERWCRMLGYEPDEIEHHIDVW 433

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
             L+      D    +PV            +               +        +Q   
Sbjct: 434 EKLVHPD---DMKKTRPVHERCMRGEISHFATEFRMRTKQGGWKWILGRGMVVSRDQQGN 490

Query: 427 NMPQNGIEPEDVDTRINKRKM-------EIEVMQLCSILEATSDGIAIINREGIILSTNR 479
            +   G   +    +  +  +       E     + +IL + +DG+ + NR+  I   NR
Sbjct: 491 PLRLTGTHKDISQQKNTEHALKKALQESEEARNNINAILTSLTDGMIVSNRDHHITMINR 550

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE-KL 538
           A  KL        + +     ++    S     +  +       T++   +  +++E ++
Sbjct: 551 AAQKLLDVDEHQAIGQLVETIVDGQVFSDELGSI--LSQEKTTTTIDVEMMDQSRQEMRV 608

Query: 539 LSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
           +  R        S  S     + D++  +              + +  KS+F++  +HE+
Sbjct: 609 IQARFSAIYDNESIPSGAITLLQDVTRSR--------------EMARLKSEFISTAAHEL 654

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM- 655
           RTPLTA++GFS+++       +      EY   I      +  IV+DLLD+S+IESG++ 
Sbjct: 655 RTPLTAMLGFSDLLLESPD--ISAEERREYLQIISSKSESLAAIVDDLLDLSRIESGRLI 712

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715
            L  + + L + +   I   +    + +    T   +    +  D   + Q+  N+LSNA
Sbjct: 713 TLDQKQIPLQQTLVGLIEQYRDSCPDHQ--FITHLNDIDSMLYIDENKMAQVIENLLSNA 770

Query: 716 IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           + ++P GG I I T    +  + L + D G+GMT  ++E+    F ++  +      G G
Sbjct: 771 VKYSPEGGNISIETRREPDGFL-LTIADQGIGMTPAQVERIFNKFYRVDGTNT-AVGGLG 828

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           LG+ +AK +V+A+ G+ ++ ST  +GT   +  PL D S
Sbjct: 829 LGMSIAKHIVEAHQGEIWVESTINQGTTSYVRLPLSDLS 867


>gi|91774050|ref|YP_566742.1| multisensor signal transduction histidine kinase [Methanococcoides
           burtonii DSM 6242]
 gi|91713065|gb|ABE52992.1| HATPase domain-containing multisensor signal transduction histidine
           kinase [Methanococcoides burtonii DSM 6242]
          Length = 582

 Score =  343 bits (879), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 104/372 (27%), Positives = 184/372 (49%), Gaps = 5/372 (1%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +     ++    +   I+   +DGI +I +   +   N   +K+ GY   DI+ +PF+ +
Sbjct: 207 KRKTEMIKSASEKYSVIINKGNDGI-VIEQNDKLKFVNPRFAKMVGYDANDIIGQPFSEY 265

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI--IIKKLPFSSCYSLTM 558
           ++ +  + + +   ++   +            + E  ++ + I   I      S     +
Sbjct: 266 VQNHHKNELTNINRKLWKSEGPADHRYEISLISNENDIIPVEISSTILNYEGKSSIVSVI 325

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            DI+E KQ + +L  AK  AE  ++ +S+F+  +SHE+RTPL + IGFSE++  +  GPL
Sbjct: 326 RDITEHKQHEQELLDAKVKAENANTAQSEFIHNISHELRTPLNSTIGFSEMMITEVLGPL 385

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
            N +  +Y N +  SG  +L ++N++L+ISKIE+G++ L  + V +   V +   L+   
Sbjct: 386 -NDKQKKYLNNVKISGKHLLSLINEILNISKIENGEVELELDEVDIYTTVEDVEMLMAPI 444

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738
             E +  +  +   N+ +  AD   +KQI  NILSNAI F+P    II+        ++ 
Sbjct: 445 LAENKNELIVNIEANVGKFTADRLKLKQILYNILSNAIKFSPENENIIMDIKVID-GKLQ 503

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
             + D G G++  E     +PF Q+ +    + +GTGLGL + K  V  + GK +I S  
Sbjct: 504 TNITDKGKGLSEKEQANIFQPFVQLDDEHSEKQKGTGLGLTIVKRFVQLHKGKIWIDSEE 563

Query: 799 AKGTLIEIIFPL 810
            KGT      PL
Sbjct: 564 GKGTTFCFTIPL 575



 Score = 42.3 bits (98), Expect = 0.35,   Method: Composition-based stats.
 Identities = 19/156 (12%), Positives = 47/156 (30%), Gaps = 7/156 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL-KRQNTWYGKT 147
           I+ +  LK ++    K +G  A  +IG    +     H +   +I   L K +     + 
Sbjct: 233 IEQNDKLKFVNPRFAKMVGYDANDIIGQPFSEYVQNHHKNELTNINRKLWKSEGPADHRY 292

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRG-FGIVHVNRVDNDPRALGKRLDKKFSH 206
            +  I   N  +P+++++  +      + G      ++                  K  +
Sbjct: 293 EISLISNENDIIPVEISSTIL-----NYEGKSSIVSVIRDITEHKQHEQELLDAKVKAEN 347

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS 242
            +  +         +       +      M  +V  
Sbjct: 348 ANTAQSEFIHNISHELRTPLNSTIGFSEMMITEVLG 383


>gi|253700700|ref|YP_003021889.1| multi-sensor hybrid histidine kinase [Geobacter sp. M21]
 gi|251775550|gb|ACT18131.1| multi-sensor hybrid histidine kinase [Geobacter sp. M21]
          Length = 1260

 Score =  343 bits (879), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 115/828 (13%), Positives = 255/828 (30%), Gaps = 81/828 (9%)

Query: 33   GFETEKSKKENPCHDSFEQ-----SNFTDQNQESVSNTNYLDSENTF-VFDPIPRTVRFT 86
            G   +K   +    ++ ++       F    +E ++  + L S+  F         +   
Sbjct: 323  GMTQQKEAAQPIGANTGDEIAVLRHAFDQLLKELIAQKSELKSQLDFSRILIDIIPIPVY 382

Query: 87   WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYG 145
            +  D  G     ++      G    +++G  + DV      D       +LL+       
Sbjct: 383  YK-DTFGRYLGCNQAFLDFNGITRDELLGKTVHDVVPSDLADQYHRSDEELLRAGGVQVF 441

Query: 146  KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
            +     + G      I        + +    G  G  +              +   +   
Sbjct: 442  EAKA--VNGRLTQRDITFFKTTFPASDGSRGGILGAML--DITEHKQAEEALQTQKEFAE 497

Query: 206  HLHEIKKGHSSVEKEKYDIFSQQSPPPHLR--------------------MKNKVSSLTE 245
             L       + V   ++ +    S    L                      +  ++ L  
Sbjct: 498  SLVMNSTVPTFVLDHRHRVIIWNSALEALTGIKADDVLGLENLWKIFYETERPLLADLII 557

Query: 246  YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
              A  D       Y         +  +  +   +   +        +++ +      L  
Sbjct: 558  DEALDDLSKHYGHYQQSPLISGGIQAEGWYRDPSGEGHYITISAAPIRDRNGILVGALQV 617

Query: 306  RNHPSLSAYFDEG----ENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDI 360
                +      +            +D        V + G + + NP+   +  +   + +
Sbjct: 618  MEDITERKQAQDAHEKTRRQLQLILDAAGEGINGVDTQGKITFVNPAAADMVGWTQEELL 677

Query: 361  EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
                    +  + +   N  ++   +  +        +     + +  +          +
Sbjct: 678  GQNQHA-LMHHSREDGSNFPVQECAIAAACHEGRPYKSEELFWRKDGTSFYVECNCSPLR 736

Query: 421  ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
             +   + +    I  +  + R+ + ++     +L   +  +   I I +  G I   N  
Sbjct: 737  ED--GQLVGAVIIYKDMTERRLAEEQLL----KLSQAVMQSPVSIMITDTLGNIEFVNPR 790

Query: 481  VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
             + + GY  ++++ +   +     T   +   L   ++    +          K      
Sbjct: 791  FTHVTGYEADEVIGRNPKLLQSGKTSPELYQGLWNTITSG--RVWTGELYNRYKSGATHW 848

Query: 541  LRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
                I  +  S+     +   M  ISE K+ + +L  A+K+              V+H+ 
Sbjct: 849  EHATISPIRNSAGTISHFMAFMESISERKKLEEQLRQAQKM-----EAVGQLAGGVAHDF 903

Query: 597  RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
               LT I+GF ++++     P G+P  +E    I  + +    +   LL  S+    K  
Sbjct: 904  NNILTVIMGFGQLLQ--HSLPAGDP-MLESMEQILDAADRATHLTRSLLAFSR----KQV 956

Query: 657  LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716
            +    V L +   +    + +    + + ++T F      ++AD   ++Q+ +N+ +NA 
Sbjct: 957  MLLHQVELSDLARKHAKFL-VRIIGEDVTLKTYFCEEKLMVMADSGQIEQVLMNLATNAR 1015

Query: 717  HFTPSGGQIIISTTHT--------------SNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
               P GG++II T                      ++ V DTG GM     +K  +PF  
Sbjct: 1016 DAMPGGGELIIKTEAVQLDKAFHRLHGYGMPGRYALITVTDTGTGMDPETQQKIFEPFFT 1075

Query: 763  IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
                    G GTGLGL +   ++  + G   IFS    GT   I  PL
Sbjct: 1076 TKLP----GRGTGLGLSIVYGIIKQHGGYVTIFSQRGFGTTFSIYLPL 1119



 Score = 76.2 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/257 (15%), Positives = 80/257 (31%), Gaps = 15/257 (5%)

Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
            T Q            P          + ++  +    +    K +++ ++     +++ 
Sbjct: 317 FTEQIRGMTQQKEAAQPIGANTGDEIAVLRHAFDQLLKELIAQKSELKSQLDFSRILIDI 376

Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520
               +   +  G  L  N+A     G   +++L K     +  +     +    E+L   
Sbjct: 377 IPIPVYYKDTFGRYLGCNQAFLDFNGITRDELLGKTVHDVVPSDLADQYHRSDEELLRAG 436

Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIA 578
             Q  E   +     ++ ++                   M DI+E KQ +  L   K+ A
Sbjct: 437 GVQVFEAKAVNGRLTQRDITFFKTTFPASDGSRGGILGAMLDITEHKQAEEALQTQKEFA 496

Query: 579 EK--ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
           E    +S    F+    H        II  S  ++        +   +E    I      
Sbjct: 497 ESLVMNSTVPTFVLDHRH------RVIIWNSA-LEALTGIKADDVLGLENLWKIFYETER 549

Query: 637 --VLDIVND--LLDISK 649
             + D++ D  L D+SK
Sbjct: 550 PLLADLIIDEALDDLSK 566


>gi|58580321|ref|YP_199337.1| sensor histidine kinase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|188578743|ref|YP_001915672.1| sensor histidine kinase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|58424915|gb|AAW73952.1| sensor histidine kinase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|188523195|gb|ACD61140.1| sensor histidine kinase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 678

 Score =  343 bits (879), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 97/518 (18%), Positives = 194/518 (37%), Gaps = 41/518 (7%)

Query: 313 AYFDEGENLTPETVDKCPIPFFVYS---HGN------LFYANPSFLLLTKYKSVDDIEIA 363
           A       +  E        F V      G       +   N +F   T   +       
Sbjct: 23  AEPFLDPAMYHEIFHNIDAGFCVIDMVFDGEQAVDYLIRTTNGAFERYTGLSTNAL---N 79

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
             +  LL      +        L       I    +   ++          +        
Sbjct: 80  ISIRDLLPE---HEQEWFDRYGLVARTGNRIHFEMQAKALKR--------WYSVDAFRVG 128

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
            P+      +  +  + +  +R++     +  ++ +     + +++ +G++   N A  +
Sbjct: 129 RPDQGRVAVLFMDITERKRVERELAESEARFSALADGLPMPVWVLDAQGVVRFVNSAYGE 188

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
            FG  +       ++  L  +             SL  ++ L  +      + +   + +
Sbjct: 189 FFGLDISSGTVSAWSELLHPDDLPTFQ--FELAASLQEQRGLRALVRARRHDGQWRWIEM 246

Query: 544 IIKKLPFSSCYSLTMH----DISEWKQEK-------NKLSHAKKIAEKESSHKSDFLARV 592
                  +    + +     D++E ++ +            A+  AE  +  K +FLA +
Sbjct: 247 TATPRYSADGRFIGLAGSSPDVTEQREIELAREQLLESERSARNEAESMARLKDEFLATL 306

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHE+RTPLT I+G+SE++  +     G+  Y    + I  S      +++D+LD+S +  
Sbjct: 307 SHELRTPLTTILGWSELLLQRV--EEGHTTYKG-LSVIASSARAQKRLISDMLDLSSMLL 363

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712
           GK+ L  E + L E V EA++  +L A  K  ++          +L D   ++Q+  N+L
Sbjct: 364 GKVQLEVESLDLAEQVREALNTQELAAEGKDQILELHVPPTPCLVLGDATRLQQVVWNLL 423

Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           SNAI FTP+ G+I +S     +  +++ V D+G G+    L      F Q   +   +  
Sbjct: 424 SNAIKFTPAHGRIDVSIE-RDDGHLVVSVCDSGDGIAAEFLPHLFGRFRQADGTTTRQHG 482

Query: 773 GTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFP 809
           G GLGL + + +V+ + G+    S    KG    +  P
Sbjct: 483 GLGLGLAIVQQLVEMHGGQVGATSGGRGKGATFTVRLP 520



 Score = 76.2 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/463 (9%), Positives = 116/463 (25%), Gaps = 48/463 (10%)

Query: 54  FTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM 113
           F D  +         +SE  F        +   W +DA G ++ ++    +  G      
Sbjct: 139 FMDITERKRVERELAESEARFSALADGLPMP-VWVLDAQGVVRFVNSAYGEFFGLDISSG 197

Query: 114 IGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172
                 ++     +      +   L+ Q            +G   +  I++ A P YS +
Sbjct: 198 TVSAWSELLHPDDLPTFQFELAASLQEQRGLRALVRARRHDG--QWRWIEMTATPRYSAD 255

Query: 173 REFSGFRGFG-IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231
             F G  G    V   R     R      ++   +  E        E         ++P 
Sbjct: 256 GRFIGLAGSSPDVTEQREIELAREQLLESERSARNEAESMARLKD-EFLATLSHELRTPL 314

Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLN---QYTKKQY 288
             +   +++        H      +       +++  + +  D  ++ L       +   
Sbjct: 315 TTILGWSELLLQRVEEGHTTYKGLSVIASSARAQKRLISDMLDLSSMLLGKVQLEVESLD 374

Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSF 348
                  +  + E  +      L  +      L      +     +      + +  P+ 
Sbjct: 375 LAEQVREALNTQELAAEGKDQILELHVPPTPCLVLGDATRLQQVVWNLLSNAIKF-TPAH 433

Query: 349 LLLTKYKSVDDI-------EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401
             +      DD        +   G++                    +     +  +    
Sbjct: 434 GRIDVSIERDDGHLVVSVCDSGDGIAAEFLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQ 493

Query: 402 TIQWNREN-----------SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR----K 446
            ++ +              +     +P    +Q      +             +     +
Sbjct: 494 LVEMHGGQVGATSGGRGKGATFTVRLPEHIPDQAKRPRRELRRRLMSEQIVEARALNGLR 553

Query: 447 MEIEVMQ------LCSILE----------ATSDGIAIINREGI 473
           +     Q      L  +LE          + +D +A+++  G 
Sbjct: 554 LLAVEDQPDMLDYLRRLLEEQGAEVVTAGSATDALALLDHRGH 596


>gi|302391635|ref|YP_003827455.1| multi-sensor signal transduction histidine kinase [Acetohalobium
           arabaticum DSM 5501]
 gi|302203712|gb|ADL12390.1| multi-sensor signal transduction histidine kinase [Acetohalobium
           arabaticum DSM 5501]
          Length = 592

 Score =  343 bits (879), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 82/390 (21%), Positives = 176/390 (45%), Gaps = 26/390 (6%)

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
           ++            + ++ +IN  ++  E  ++ +IL    DG+  ++ +G I+  N A 
Sbjct: 224 DELGRLSRAFNNMADKLEAKIN--EISGEKNKIEAILRGMGDGVIAVDEDGKIILLNPAA 281

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
            ++F    E  L K     +E      ++  +   L      T E  T+     E+++ +
Sbjct: 282 EEIFQLKEEKTLGK---YTMEVTRSHKLDDAIMASLKNGEDITEEIETIYPV--ERMIRV 336

Query: 542 RIIIKKLPF--SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
            +   K            + D++E ++ +                +++F++ VSHE+RTP
Sbjct: 337 HVTPIKNDKTTERGAVAVLRDVTELRRLE--------------QIRTEFVSNVSHELRTP 382

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           LT+I G+ E + ++R    G      +   I    + +  ++ DLL++S++ES   +   
Sbjct: 383 LTSIKGYVETLLDERDCEPGVRE--RFLQVIKDETDRLERLITDLLNLSQLESASDSFDQ 440

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719
           E V+L++ +   ++ V   A+ K I ++     +I  I      ++++ +N++ N I +T
Sbjct: 441 ELVNLNQVIENVLTTVMPKADNKGIDLKVDVPVDITGIKGSRGQLERLYINLVDNGIKYT 500

Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
             GGQ+ I   +   + V   + DTG+G+   +L +  + F ++  ++  +  GTGLGL 
Sbjct: 501 SEGGQVKIKV-YEDEDRVWSEIIDTGMGIPEEDLPRIFERFYRVDKTRSRKLGGTGLGLS 559

Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           + K +++ + G   + S   +GT      P
Sbjct: 560 IVKHILERHNGGIEVESKVEEGTKFIFWLP 589



 Score = 46.2 bits (108), Expect = 0.026,   Method: Composition-based stats.
 Identities = 30/240 (12%), Positives = 73/240 (30%), Gaps = 12/240 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D  G +  ++    +       K +G    +V+    +D  + I   LK       +  
Sbjct: 268 VDEDGKIILLNPAAEEIFQLKEEKTLGKYTMEVTRSHKLD--DAIMASLKNGEDITEEIE 325

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                   + V +     PI +      G     ++           +  R +   +  H
Sbjct: 326 TIYPVERMIRVHVT----PIKNDKTTERGA--VAVLRDVTELRRLEQI--RTEFVSNVSH 377

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           E++   +S++     +  ++   P +R   +   + +    + + L T+   L   E +S
Sbjct: 378 ELRTPLTSIKGYVETLLDERDCEPGVR--ERFLQVIKDETDRLERLITDLLNLSQLESAS 435

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
               ++   +N              +N     +     +   +     + E L    VD 
Sbjct: 436 DSFDQELVNLNQVIENVLTTVMPKADNKGIDLKVDVPVDITGIKGSRGQLERLYINLVDN 495


>gi|289665498|ref|ZP_06487079.1| two-component system sensor histidine kinase-response regulator
           hybrid protein [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 660

 Score =  343 bits (879), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 97/522 (18%), Positives = 192/522 (36%), Gaps = 41/522 (7%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYS---HGN------LFYANPSFLLLTKYKSVDD 359
           P+  A       +  E        F V      G       +   N +F   T   +   
Sbjct: 1   PAAIAEPFLDPAMYHEIFHNIDAGFCVIDMVFDGEQAVDYLIRTTNGAFERYTGLSTNAL 60

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
                 +  LL      +                I    +   ++          +    
Sbjct: 61  ---NVSIRNLLPE---HEQEWFDRYGHVARTGNRIHFEMQAKALKR--------WYSVDA 106

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
                PE      +  +  + +  +R++     +  ++ +     + +++ +G++   N 
Sbjct: 107 FRVGPPEQGRVAILFMDITERKRVERELAESEARFSALADGLPMPVWVLDAQGVVRFVNS 166

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
           A  + FG  +       +   L  +             SL  +  L  +      + +  
Sbjct: 167 AYGEFFGLDISSGTVSAWRELLHPDDLPTFQ--FELTASLQEQHGLRALVRARRHDGQWR 224

Query: 540 SLRIIIKKLPFSSCYSLTMH----DISEWKQEK-------NKLSHAKKIAEKESSHKSDF 588
            + +       +    + +     D++E ++ +            A+  AE  +  K +F
Sbjct: 225 WIEMTATPRYSADGRFIGLAGSSPDVTEQREIELAREQLLESERSARNEAESMARLKDEF 284

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
           LA +SHE+RTPLT I+G+SE++  +      N +     + I  S      +++D+LD+S
Sbjct: 285 LATLSHELRTPLTTILGWSELLLQRVEEGQPNYKG---LSVIASSARAQKRLISDMLDLS 341

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIA 708
            +  GK+ L  E + L E V EA++  +L A  K  ++          +L D   ++Q+ 
Sbjct: 342 SMLLGKVQLEVESLDLVEQVREALNTQELAAEGKDQILELHVPPTPCLVLGDATRLQQVL 401

Query: 709 LNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
            N+LSNAI FTP+ G+I +S     +  +++ V D+G G+    L      F Q   +  
Sbjct: 402 WNLLSNAIKFTPAHGRIDVSIE-RDDGHLVVSVSDSGDGIAAEFLPHLFGRFRQADGTTT 460

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFP 809
            +  G GLGL + + +V+ + G+    S    KG    +  P
Sbjct: 461 RQHGGLGLGLAIVQQLVEMHGGQVGATSGGRGKGATFTVRLP 502



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 46/462 (9%), Positives = 118/462 (25%), Gaps = 46/462 (9%)

Query: 54  FTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM 113
           F D  +         +SE  F        +   W +DA G ++ ++    +  G      
Sbjct: 121 FMDITERKRVERELAESEARFSALADGLPMP-VWVLDAQGVVRFVNSAYGEFFGLDISSG 179

Query: 114 IGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172
                 ++     +      +   L+ Q+           +G   +  I++ A P YS +
Sbjct: 180 TVSAWRELLHPDDLPTFQFELTASLQEQHGLRALVRARRHDG--QWRWIEMTATPRYSAD 237

Query: 173 REFSGFRGFG-IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231
             F G  G    V   R     R      ++   +  E        E         ++P 
Sbjct: 238 GRFIGLAGSSPDVTEQREIELAREQLLESERSARNEAESMARLKD-EFLATLSHELRTPL 296

Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291
             +   +++          +    +       +++  + +  D  ++ L +   +     
Sbjct: 297 TTILGWSELLLQRVEEGQPNYKGLSVIASSARAQKRLISDMLDLSSMLLGKVQLEVESLD 356

Query: 292 LQN---NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYA---- 344
           L      +  + E  +      L  +      L      +     +      + +     
Sbjct: 357 LVEQVREALNTQELAAEGKDQILELHVPPTPCLVLGDATRLQQVLWNLLSNAIKFTPAHG 416

Query: 345 --NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT 402
             + S      +  V   +   G++                    +     +  +     
Sbjct: 417 RIDVSIERDDGHLVVSVSDSGDGIAAEFLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQL 476

Query: 403 IQWNREN-----------SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR----KM 447
           ++ +              +     +P    +Q      +             +     ++
Sbjct: 477 VEMHGGQVGATSGGRGKGATFTVRLPEHIPDQAKRPRRELRRRLMSEQIVEARALNGLRL 536

Query: 448 EIEVMQ------LCSILE----------ATSDGIAIINREGI 473
                Q      L  +LE          + +D +A+I+  G 
Sbjct: 537 LAVEDQPDMLDYLRRLLEEQGAEVVTAGSATDALALIDHRGH 578



 Score = 55.4 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/175 (10%), Positives = 50/175 (28%), Gaps = 11/175 (6%)

Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLL 350
                + +  ++       +     E E       D  P+P +V    G + + N ++  
Sbjct: 111 PPEQGRVAILFMDITERKRVERELAESEARFSALADGLPMPVWVLDAQGVVRFVNSAYGE 170

Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
                    ++I+ G  +        D+       L  S +      A L   + +    
Sbjct: 171 FFG------LDISSGTVSAWRELLHPDDLPTFQFELTASLQEQHGLRA-LVRARRHDGQW 223

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRI---NKRKMEIEVMQLCSILEATS 462
             +      + +     +   G  P+  + R     + ++        +  E+ +
Sbjct: 224 RWIEMTATPRYSADGRFIGLAGSSPDVTEQREIELAREQLLESERSARNEAESMA 278


>gi|91976495|ref|YP_569154.1| ATP-binding region, ATPase-like [Rhodopseudomonas palustris BisB5]
 gi|91682951|gb|ABE39253.1| ATP-binding region, ATPase-like [Rhodopseudomonas palustris BisB5]
          Length = 771

 Score =  343 bits (879), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 128/686 (18%), Positives = 258/686 (37%), Gaps = 71/686 (10%)

Query: 181 FGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK- 239
            G+V ++R  +    L   L             H  V      + ++          N+ 
Sbjct: 90  IGVVRLDRAASI-ERLQSLLPGLVPSWGIAAGRHVIVTGADQRVLARVPGDEGASAANRF 148

Query: 240 --VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297
             + S T             +  L +   +                 ++     L++++ 
Sbjct: 149 LDIISATPTLTKSSQQGVLSEITLPSGASALATLHTIKSLPGQVIIIQEDTGSILRSDAA 208

Query: 298 ESFEYLSHR----------------NHPSLSAYFDEGENLTPETVDKCPIPFFVYSH--G 339
                 +                           D   +     +++     + +    G
Sbjct: 209 LQITLSATTGFVVLILGFAFHWQSTRAREGDLINDAVRSRIDTALNRGRCGLWDWDLSRG 268

Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399
            + + + S   L   +S +D+   G ++ L+++  +        ++   +D         
Sbjct: 269 RI-FWSQSMFTLLGLESRNDLLTFGEVNALVNSDDIDLFTIGDELIAGAAD-----HIDH 322

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459
              ++    + + +            EN    GI  +  + +    +     ++L   +E
Sbjct: 323 SFRMRHANGHWIWLRMRCELSQESPTENKHLIGIAVDVTEQKSLAERTVEADLRLRDAIE 382

Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLTEILS 518
              +   + + +  ++  N    +L   P   I     +   +E      +     +   
Sbjct: 383 TLPEAFVLWDSDNRLVLCNSHFQRLHKLPDSAIAPGTSYETVIEVGQMPEIRT--RQCDV 440

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA---- 574
                   +       +   L +    ++      Y     +I+  K  + KL       
Sbjct: 441 GAGSPPGARTFEAQLDDGSWLHIS---ERRTKDGGYVAVGTNITRIKAHEQKLVDNDLRL 497

Query: 575 -------------------------------KKIAEKESSHKSDFLARVSHEIRTPLTAI 603
                                          K  AE+ +  KS FLA +SHE+RTPL AI
Sbjct: 498 RATVADLKISQVKLERQAIELADLARKYSEEKNRAEEANQAKSKFLANMSHELRTPLNAI 557

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           IGFSE++ +  FG LG+ +Y EY + I  SG+ +L+++ND+LD+SKIE+G+M L  E + 
Sbjct: 558 IGFSEIMGSGMFGTLGSEKYQEYCHDIMTSGHYLLEVINDILDMSKIEAGRMRLEMEELD 617

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
           L   + E++ +V   A+ K + +R    + IP I+AD R++KQI +N+LSNA+ FTP GG
Sbjct: 618 LARTLGESLKVVAGRADNKHLELRAEIEDGIP-IVADRRAIKQILINLLSNAVKFTPDGG 676

Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
           ++ + +    +  +++ + D+G+G+    L +  +PF Q+ +       G+GLGL +AK+
Sbjct: 677 RVTVRSRTLED-SIVMMIADSGIGIAPQSLRRLGQPFEQVESQLTKTYHGSGLGLAIAKS 735

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFP 809
           +   + G   + ST   GT++ +  P
Sbjct: 736 LTRLHGGSMRLRSTLGAGTVVMVTLP 761


>gi|330831029|ref|YP_004393981.1| Virulence sensor protein BvgS [Aeromonas veronii B565]
 gi|328806165|gb|AEB51364.1| Virulence sensor protein BvgS, putative [Aeromonas veronii B565]
          Length = 1413

 Score =  343 bits (879), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 102/596 (17%), Positives = 220/596 (36%), Gaps = 34/596 (5%)

Query: 227  QQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKK 286
               P     M   + ++T+       +L+     +  + ES       +  I        
Sbjct: 466  NAQPELLRIMDKLLLTITDEEW---QLLERRWLNVSVNIESDYTLIYKWLAIGGGALLVS 522

Query: 287  QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYAN 345
                     S                   +E        ++  P    +  S   +   N
Sbjct: 523  GLLVMFWARSLRR----QIAQRKIAEDKLNEQLLFVQTLLNSLPTMVALRDSEQRITLCN 578

Query: 346  PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405
             ++           +        L + P+   N+ ++   L                ++ 
Sbjct: 579  QAY-------RDAFLGAGSSSEELQNMPETLRNSVLEEERLVWQTGQ--DLEGAGSNLRA 629

Query: 406  NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465
            +      +        +     +    +  +    +  + +      +L  I ++   G+
Sbjct: 630  DGTPCHVIYAKR-PYRDPDGNMLGVLTVLTDVSRIKEAEERARQAENRLTQITDSMP-GV 687

Query: 466  A---IINR--EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520
                +     +G  L  ++  S++ G   +++        +   T   +  +++++ +  
Sbjct: 688  VYQYLWQGPGKGRFLYASQGASEILGASRQELFNAESGCEVFGFTEEALQDFVSKVANHA 747

Query: 521  LR-QTLEKITLGSTKEE-KLLSLRIIIKKLPFSSCYS-LTMHDISEWKQEKNKLSHAKKI 577
                 L+        +  + L +R    +    +      + DI+  KQ++ +L  A+  
Sbjct: 748  ETLAPLDLEVKVERPDGDRYLQVRGNFVRQEQQALILNGVIQDITALKQQEYELREARAY 807

Query: 578  AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
            AE+    +S FLA +SHE+RTP++ + G  E+++        N         +  S N +
Sbjct: 808  AEQAMQARSRFLATMSHELRTPISGMHGMLELLQMSEL----NDDQRFMVRNVVTSTNNL 863

Query: 638  LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-R 696
            L +VND+LD SKIE+G++ L+++   L   + +AI      A+ K + +   + +++P  
Sbjct: 864  LYLVNDILDFSKIEAGQLQLNYQSSRLQTVICDAIRGHAALAHNKGLNVVLEWEHHVPDW 923

Query: 697  ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKA 756
               D   + Q+  N+L+NA+ FT  GG I I  ++  +E++ + V DTG+G+   +    
Sbjct: 924  ADIDGVRIGQVISNLLNNAVKFTEQGG-ITIRVSYL-SEQLTISVSDTGIGIAEEKQALL 981

Query: 757  MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
              PF Q+ +    R  GTGLGL + + +V    G   + S   +G+      PL +
Sbjct: 982  FTPFEQVESDINRRFGGTGLGLAICEQLVCKMGGALTLTSKAGEGSCFRFTVPLTN 1037


>gi|283851408|ref|ZP_06368689.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283573146|gb|EFC21125.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 967

 Score =  343 bits (879), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 107/587 (18%), Positives = 206/587 (35%), Gaps = 39/587 (6%)

Query: 245 EYYAHKDDVLKTEKYPLLTS--EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302
           +  AH D       +P L S               + L           L          
Sbjct: 259 DPAAHPDSGGAPAGHPPLASFLGVPLRQRGLALGLLALANKPGGYTDEDLLAAEALGLAI 318

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV---YSHGNLFYANPSFLLLTKYKSVDD 359
               +           E      V+  P   FV          Y +PS   ++       
Sbjct: 319 AEVLSRGRAEEALRASEEEHRTLVENLP-GVFVSKFDRDLRHTYVSPSVARISGLPQDHF 377

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
           +      +   +        A    +               +++  +           + 
Sbjct: 378 LGRRPTETVWREMGFADRIEAAVERVFATGQGDGF-----QYSLPSDDGERHR-KVRTYP 431

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI----AIINREGI-- 473
              +  +         +  D     R+++    +   + ++  +G      + +  G   
Sbjct: 432 DRVENGQVASVVAFSYDVTDLVEMGRELKASEERFRFLFDSMDEGFCLIEVLFDPAGRPV 491

Query: 474 ---ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530
               L  N A +K  G      + +     +              + +      +EK   
Sbjct: 492 DYRFLEVNPAFAKQTGLIG--AVGRRMRELV-PEHEEHWFQIYGHVAATGQSVRVEKPAA 548

Query: 531 GSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
           G     +   +       P     ++   D++E ++ +  L  AK+ AE  +  KS+FLA
Sbjct: 549 GL---GRFYDVNAFRVGDPEQRRVAIFFTDMTERRRGEEALLQAKQEAEAANQAKSEFLA 605

Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650
            +SHEIRTP+  I+G    +   +     +P  ++Y +  D+S   +L IVND+LD+SK+
Sbjct: 606 NMSHEIRTPMNGIMGMI-HLARLKS---ADPTILQYLDLADKSALHLLGIVNDVLDLSKM 661

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIAL 709
           E+GK+ L   P +L      A+  + + A EK ++     A+++P  ++ D   ++Q+  
Sbjct: 662 EAGKIRLAAAPFALRREFESAVEPLLVAAGEKGLVFEHGVADDVPDHVIGDAGRLRQVLT 721

Query: 710 NILSNAIHFTPSGGQIIISTTHTSNE------EVILRVRDTGVGMTNYELEKAMKPFGQI 763
           N++ NA+ FT  G +I +     +         ++  VRDTG+G+    L +  + F Q 
Sbjct: 722 NLVGNALKFTGKG-RIEVRVALAAGAAEPGTRRLLFTVRDTGIGIPAKRLSRIFESFEQA 780

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            +S      GTGLGL ++K +V+   G+    S   +G+       L
Sbjct: 781 HSSAHALYGGTGLGLTISKRLVELMGGEIIAESREGQGSTFSFSITL 827



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/356 (10%), Positives = 79/356 (22%), Gaps = 31/356 (8%)

Query: 69  DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS---DIL 125
            SE             F    D       +S  + +  G      +G R  +        
Sbjct: 333 ASEEEHRTLVENLPGVFVSKFDRDLRHTYVSPSVARISGLPQDHFLGRRPTETVWREMGF 392

Query: 126 HIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF---- 181
                  +  +        G     P +    +  +     P    N + +    F    
Sbjct: 393 ADRIEAAVERVFATGQGD-GFQYSLPSDDGERHRKVRT--YPDRVENGQVASVVAFSYDV 449

Query: 182 -GIVHVNRVDNDPRALGKRLDKKFSH---LHEIKKGHSSVEKEKYDIFSQQSP------- 230
             +V + R         + L         L E+     +     Y               
Sbjct: 450 TDLVEMGRELKASEERFRFLFDSMDEGFCLIEVLFDP-AGRPVDYRFLEVNPAFAKQTGL 508

Query: 231 --PPHLRMKNKVSSLTEY----YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYT 284
                 RM+  V    E+    Y H     ++ +     +      +   F   +  Q  
Sbjct: 509 IGAVGRRMRELVPEHEEHWFQIYGHVAATGQSVRVEKPAAGLGRFYDVNAFRVGDPEQRR 568

Query: 285 KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG--ENLTPETVDKCPIPFFVYSHGNLF 342
              +F  +    +     L  +     +         N++ E          +     L 
Sbjct: 569 VAIFFTDMTERRRGEEALLQAKQEAEAANQAKSEFLANMSHEIRTPMNGIMGMIHLARLK 628

Query: 343 YANPSFLLLTKYKSVDDIEIAGGL-STLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397
            A+P+ L          + + G +   L  +   +    +             A  
Sbjct: 629 SADPTILQYLDLADKSALHLLGIVNDVLDLSKMEAGKIRLAAAPFALRREFESAVE 684



 Score = 51.2 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/147 (12%), Positives = 50/147 (34%), Gaps = 15/147 (10%)

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTN----RAVSKLFGYPVEDILRKPFTVF--- 500
           E  V  L  IL+ +S+ +A  + +   L+ N     A +++FG      +          
Sbjct: 20  EAVVSLLQGILDGSSELMAAHDPDFRCLAVNGAYREAFARIFGV--AIAVGTNLMAALAG 77

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM-- 558
           L +   + +        + +    +E          +     I    L        T+  
Sbjct: 78  LPEERTAGVRELFERARAGEAFSVVEG---FGDPGPERTWYEIRFVPLRRDGVRVGTIQY 134

Query: 559 -HDISEWKQEKNKLSHAKKIAEKESSH 584
             D++   + +  L   ++++ ++++ 
Sbjct: 135 LRDVTNRLRREEALRDREELSRRQNAL 161


>gi|310641218|ref|YP_003945976.1| sensor protein [Paenibacillus polymyxa SC2]
 gi|309246168|gb|ADO55735.1| Sensor protein [Paenibacillus polymyxa SC2]
          Length = 600

 Score =  342 bits (878), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 86/404 (21%), Positives = 170/404 (42%), Gaps = 30/404 (7%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
            ++ ++  +         + +  ++  + +      L S++   + GI +I+    I   
Sbjct: 221 VQRRDEVGQLGEAINRMADSLQNQM--KTIRDNEDLLQSVMSNMTGGILMIDARECIALV 278

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
           NR   ++ G   + +  KP+    +    + +        S+  R+ L         EE+
Sbjct: 279 NRESERMLGVVGKRVTDKPYHELKKHYELTKLIEG-----SIQSRERLHGEVHLYNPEER 333

Query: 538 LLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
           L+ L  +               + DI+  ++ +              + +S+F+A VSHE
Sbjct: 334 LVLLDGVPMYEDEGGYRGMLFLLQDITAIRRLE--------------NMRSEFVANVSHE 379

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           ++TP+ A+ GF+E +     G         +   I      +  ++ D+L++SKIES + 
Sbjct: 380 LKTPIAAVKGFAETLLGG--GVKDEETARSFLQIIYDESERLNRLIGDILELSKIESKRS 437

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715
            L   P+ +   +   +  +   A +KRI +     + +  + AD   ++QI LN+LSN 
Sbjct: 438 PLDCSPIHISSFIESLLEKLNNVAAKKRITLHMDIPDEL-FMEADEDKLQQIFLNLLSNG 496

Query: 716 IHFTPSGGQIIIST----THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           I++T  GG++ I           E+V+  V DTG+G+   +L +  + F ++   +    
Sbjct: 497 INYTLDGGKVKIKVITLQRDNDTEKVVFTVSDTGIGIPKKDLPRIFERFYRVDKGRSRNS 556

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            GTGLGL + K +VD + G   + S    GT   +  PL     
Sbjct: 557 GGTGLGLSIVKHLVDLHHGTLSVESELGLGTTFTVELPLLQQEE 600


>gi|288959269|ref|YP_003449610.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
 gi|288911577|dbj|BAI73066.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
          Length = 1300

 Score =  342 bits (878), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 133/721 (18%), Positives = 246/721 (34%), Gaps = 52/721 (7%)

Query: 127 IDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHV 186
           ID        ++ +    G   L  + G   +  +  A      R +     R       
Sbjct: 7   IDAPAPPASPIRTRVLLSGAFALIALLGVGFWSYVVWA-----DREQTLHHSREQAQST- 60

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY 246
            R+  +                     +  +     +  +  +    +    ++++L   
Sbjct: 61  ARLLQEHVRRTVATADLALSRARDLIRYHGLAGLDTNREAWITIRDMVDALPEIAALWID 120

Query: 247 YAHKDDVLKTEKYPLLTSEESSLP----EQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302
               D +L + ++P      +         +        +   +         S+     
Sbjct: 121 GPAGDAILTSRQFPTPQVSAADRSFFKAHLDGTEFHVGERIAGRITGTEFFTVSRSIMVE 180

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIE 361
              +     +   D    L             +Y   G      P+   L        + 
Sbjct: 181 GRFQGVVHTNVDLDYYRQLYESLDIGPGSAIALYRTDGKPVLRFPASEPLAGPDGPIVLR 240

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT----IQWNRENSLA----- 412
            A   +T       ++    + +   R     +     L        W            
Sbjct: 241 HAAEAATETFEIDGTEAGTRRILSYQRVPDLPLVVFVALSEPTELAPWRERTIRGSILVA 300

Query: 413 --------MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV-----MQLCSILE 459
                   + +       +      +      ++D +  + +   E       +L  IL 
Sbjct: 301 LAVLACAGLAYAALRSLEREVAGRRRLADTNAELDAKKRELESANEAFASANRRLNLILR 360

Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN-----TPSVMNHYLT 514
           + SD I  ++R G++   N A S L GY  E++L       +            +   +T
Sbjct: 361 SASDSICGVDRNGLVTFANPATSALTGYANEELLGGNLHELIHARRADGGHFPALECPVT 420

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKL 571
           E+L               TK  K   +      +          L  H+I+E K+ +  +
Sbjct: 421 EVLLSG-ESRRGLEDTYWTKGGKPFLVEYTASPMLADGKVEGAVLVFHEIAERKRAEAAM 479

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
             A+  AE  S  KS+FLA +SHEIRTP+ AI+G   +++          R  +Y   + 
Sbjct: 480 QRARLAAEAASRAKSEFLANMSHEIRTPMNAILGLIHLLQQTELTG----RQADYVQKVR 535

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
            S   +L I+ND+LD SK+E+GK+ L      LD+ +     +V   A EK I +  S A
Sbjct: 536 VSAQSLLGILNDILDFSKVEAGKLELERADFRLDDLLQTLAVIVGSAAQEKDIDVLFSVA 595

Query: 692 NNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT---SNEEVI-LRVRDTGV 746
            ++P  ++ D   ++QI +N+  NAI FT +G ++++S        +  V+   VRDTG+
Sbjct: 596 PDVPLELVGDPLRLQQILINLAGNAIKFTETG-EVVVSVRLRTLADDGAVLDFSVRDTGI 654

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+   + E+  + F Q  +S   R  GTGLGL +   +V    G   + S P KG++   
Sbjct: 655 GIAPEQRERLFEAFSQGDSSTTRRFGGTGLGLAICARLVRLMNGAMDVESEPGKGSVFRF 714

Query: 807 I 807
            
Sbjct: 715 R 715



 Score = 55.0 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/189 (13%), Positives = 52/189 (27%), Gaps = 21/189 (11%)

Query: 55  TDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWN--------IDAHGYLKEISEELPKTI 106
            D N E  +    L+S N   F    R +             +D +G +   +       
Sbjct: 328 ADTNAELDAKKRELESANE-AFASANRRLNLILRSASDSICGVDRNGLVTFANPATSALT 386

Query: 107 GNYAFKMIGMRLCDVSDILHIDP------NNHIGDLLKRQNTWYG-KTTLWPIEGTNLYV 159
           G    +++G  L ++      D          + ++L    +  G + T W   G     
Sbjct: 387 GYANEELLGGNLHELIHARRADGGHFPALECPVTEVLLSGESRRGLEDTYWTKGGKPF-- 444

Query: 160 PIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEK 219
            ++  A P+   + +  G     + H         A  +R           K    +   
Sbjct: 445 LVEYTASPML-ADGKVEGA--VLVFHEIAERKRAEAAMQRARLAAEAASRAKSEFLANMS 501

Query: 220 EKYDIFSQQ 228
            +       
Sbjct: 502 HEIRTPMNA 510


>gi|167034015|ref|YP_001669246.1| signal transduction histidine kinase with CheB and CheR activity
            [Pseudomonas putida GB-1]
 gi|166860503|gb|ABY98910.1| signal transduction histidine kinase with CheB and CheR activity
            [Pseudomonas putida GB-1]
          Length = 1371

 Score =  342 bits (878), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 120/789 (15%), Positives = 258/789 (32%), Gaps = 63/789 (7%)

Query: 35   ETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGY 94
            E E +++    H + +      + +            +                 D  G 
Sbjct: 503  EVEPARRPGRLH-TPDTQAIRAKPKPKPLRKLSYAEIHHRALSRRTPPSLIV---DGDGN 558

Query: 95   LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEG 154
            +  +S+ + + + +   ++    L  V   L     + +               +  I+ 
Sbjct: 559  ILHMSDGVGRFLRHAGGEVSPSLLNLVLTPLRPALRSSLLQAHNTGQPVSSGAVITTID- 617

Query: 155  TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214
             +  V I +   P                                 +   S    +    
Sbjct: 618  -DQRVEIQVQVQPHQD------------------------------EPSGSECLLVVFQV 646

Query: 215  SSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQED 274
               +        Q        ++ ++    +      +        L+ S E      E+
Sbjct: 647  READPHSPPAIQQTEGMVLNTLERELQRTRQQLQETIEQSDISSQELMASNEEMQAINEE 706

Query: 275  FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP-F 333
                +    T K+   ++          L  +   +     D+  +     +    I   
Sbjct: 707  LRLASEELETSKEELQSINEELLTVNYELKTKVDET-----DKVNDYLSNLIASTQIATV 761

Query: 334  FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393
            FV  + ++ +  P    +     VD       ++  L+ P L+D+           +R  
Sbjct: 762  FVDRNLHIRWFTPGATAIFSILPVDTGRSLLDITHRLEYPGLADDARAVIERETTIEREV 821

Query: 394  IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
            I             ++                          +  ++R  + ++     +
Sbjct: 822  I------------GQDQHWYLARLLPYRASEQNVDGTVLTFIDITESRAAEERLRQGEER 869

Query: 454  LCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
            +  + E+T D  I +++ +G+I+  N   + +FGY  +++L   + +   +         
Sbjct: 870  MRLVAESTHDFAIILLDEQGLIIDWNTGAALIFGYAKDEVLGLHYALIFTEQDRENGEPE 929

Query: 513  LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNK 570
              E+ +       +       K+         + +L  S    Y     D++  K+ +++
Sbjct: 930  -RELRAARQHGRGQDERWHVRKDGSRFYCSGEVSRLKGSSLRGYVKIARDLTGHKRLQDE 988

Query: 571  LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
             S     ++  S  K +F A +SHE++ PL  I   ++ I  +           +  N I
Sbjct: 989  QSKRLAESQSSSHMKDEFFAVMSHELKHPLNLIQLNAD-ILRRIPSVTSTGMASKAVNVI 1047

Query: 631  DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
              +      I++DLLD+++I +GK+ L  +PV L   +    ++       + + +    
Sbjct: 1048 REAVTSQARIIDDLLDVARIRTGKLKLKTQPVDLCAVLQGICAVACNEQRGRSVRLTLPA 1107

Query: 691  ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
                  + AD   V+QI  N+L+NA+ F+P+ G I++  T     +  L V D G+G+  
Sbjct: 1108 DGEPVLVEADSTRVEQIIWNLLNNALKFSPADGDILLRLTRQDE-QARLEVIDQGIGLAE 1166

Query: 751  YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFP 809
              LE   + F Q   +   R EG G+GL L + +V+A+ G   + S    +G    I  P
Sbjct: 1167 DSLEGIFELFNQATPTGHGR-EGLGIGLSLVRQLVEAHGGAVSVESPGVGQGCTFVITLP 1225

Query: 810  L-YDTSHPH 817
            L   T  P 
Sbjct: 1226 LCVYTQQPQ 1234



 Score = 40.0 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 31/397 (7%), Positives = 86/397 (21%), Gaps = 13/397 (3%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            +D  G + + +       G    +++G+    +      +      +L   +    G+  
Sbjct: 885  LDEQGLIIDWNTGAALIFGYAKDEVLGLHYALIFTEQDRENGEPERELRAARQHGRGQDE 944

Query: 149  LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
             W +           +      +     G+    I          +    +   +     
Sbjct: 945  RWHVRKDGSRFYC--SGEVSRLKGSSLRGY--VKIARDLTGHKRLQDEQSKRLAESQSSS 1000

Query: 209  EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
             +K    +V   +              ++   S  +   A K   +  E           
Sbjct: 1001 HMKDEFFAVMSHELKHPLNLIQLNADILRRIPSVTSTGMASKAVNVIREAVTSQARIIDD 1060

Query: 269  LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
            L +     T  L   T+      +                  L+   D    L      +
Sbjct: 1061 LLDVARIRTGKLKLKTQPVDLCAVLQGICAVACNEQRGRSVRLTLPADGEPVLVEADSTR 1120

Query: 329  CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388
                 +   +  L ++     +L +    D+      +   +   + S     +      
Sbjct: 1121 VEQIIWNLLNNALKFSPADGDILLRLTRQDEQARLEVIDQGIGLAEDSLEGIFELFNQAT 1180

Query: 389  SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
                         ++      +                                 + +  
Sbjct: 1181 PTGHGREGLGIGLSLVRQLVEAHGGAVSVESPGVGQGCTFVITLPLCVYTQQPQVQGEAL 1240

Query: 449  IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
                +L      T   I +++    +L     + +L 
Sbjct: 1241 PSEGRL------TGVRILLVDDSLDVLEV---MEQLL 1268


>gi|325929297|ref|ZP_08190428.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas perforans
           91-118]
 gi|325929316|ref|ZP_08190447.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas perforans
           91-118]
 gi|325540319|gb|EGD11930.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas perforans
           91-118]
 gi|325540338|gb|EGD11949.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas perforans
           91-118]
          Length = 648

 Score =  342 bits (878), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 90/481 (18%), Positives = 184/481 (38%), Gaps = 32/481 (6%)

Query: 341 LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400
           +   N +F   T             +  LL      +                I    + 
Sbjct: 30  IRTTNGAFERYTGLSPNAL---NVSIRNLLPE---HEQEWFDRYGHVARTGNRIHFEMQA 83

Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
             ++          +         PE      +  +  + +  +R++     +  ++ + 
Sbjct: 84  KALKR--------WYSVDAFRVGQPEQARVAILFMDITERKRVERELAESEARFSALADG 135

Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520
               + +++ +G++   N A  + FG  +       ++  L  +             SL 
Sbjct: 136 LPMPVWVLDAQGVVRFVNSAYGEFFGLDISSGTVSAWSELLHPDDLPTFQ--FELAASLQ 193

Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH----DISEWKQEK-------N 569
            ++ L  +      + +   + +       +    + +     D++E ++ +        
Sbjct: 194 EQRGLRALVRARRHDGQWRWIEMTATPRYSADGRFIGLAGSSPDVTEQREIELAREQLLE 253

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
               A+  AE  +  K +FLA +SHE+RTPLT I+G+SE++  +         Y +  + 
Sbjct: 254 SERSARNEAESMARLKDEFLATLSHELRTPLTTILGWSELLLQRVEEGQP---YYKGLSV 310

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I  S      +++D+LD+S +  GK+ L  E + L E V EA++  +L A  K  ++   
Sbjct: 311 IASSARAQKRLISDMLDLSSMLLGKVQLEVESLDLVEQVREALNTQELAAEGKDQVLELH 370

Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749
                  +L D   ++Q+  N+LSNAI FTP+ G+I +      +  +++ V D+G G+ 
Sbjct: 371 VPPTPCLVLGDATRLQQVLWNLLSNAIKFTPAHGRIDVKIE-RDDGHLVVSVCDSGDGIA 429

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIF 808
              L      F Q   +   +  G GLGL + + +V+ + G+    S    KG    +  
Sbjct: 430 AEFLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQLVEMHGGQVGATSGGRGKGATFTVRL 489

Query: 809 P 809
           P
Sbjct: 490 P 490



 Score = 73.1 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 47/463 (10%), Positives = 117/463 (25%), Gaps = 48/463 (10%)

Query: 54  FTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM 113
           F D  +         +SE  F        +   W +DA G ++ ++    +  G      
Sbjct: 109 FMDITERKRVERELAESEARFSALADGLPMP-VWVLDAQGVVRFVNSAYGEFFGLDISSG 167

Query: 114 IGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172
                 ++     +      +   L+ Q            +G   +  I++ A P YS +
Sbjct: 168 TVSAWSELLHPDDLPTFQFELAASLQEQRGLRALVRARRHDG--QWRWIEMTATPRYSAD 225

Query: 173 REFSGFRGFG-IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231
             F G  G    V   R     R      ++   +  E        E         ++P 
Sbjct: 226 GRFIGLAGSSPDVTEQREIELAREQLLESERSARNEAESMARLKD-EFLATLSHELRTPL 284

Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291
             +   +++               +       +++  + +  D  ++ L +   +     
Sbjct: 285 TTILGWSELLLQRVEEGQPYYKGLSVIASSARAQKRLISDMLDLSSMLLGKVQLEVESLD 344

Query: 292 LQN---NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSF 348
           L      +  + E  +      L  +      L      +     +      + +  P+ 
Sbjct: 345 LVEQVREALNTQELAAEGKDQVLELHVPPTPCLVLGDATRLQQVLWNLLSNAIKF-TPAH 403

Query: 349 LLLTKYKSVDDI-------EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401
             +      DD        +   G++                    +     +  +    
Sbjct: 404 GRIDVKIERDDGHLVVSVCDSGDGIAAEFLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQ 463

Query: 402 TIQWNREN-----------SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR----K 446
            ++ +              +     +P    +Q      +             +     +
Sbjct: 464 LVEMHGGQVGATSGGRGKGATFTVRLPEHIPDQAKRPRRELRRRLMSEQIVEARALNGLR 523

Query: 447 MEIEVMQ------LCSILE----------ATSDGIAIINREGI 473
           +     Q      L  +LE          + +D +A+I+  G 
Sbjct: 524 LLAVEDQPDMLDYLRRLLEEQGAEVVVAGSATDALALIDHRGH 566



 Score = 57.7 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 19/173 (10%), Positives = 51/173 (29%), Gaps = 11/173 (6%)

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLT 352
             ++ +  ++       +     E E       D  P+P +V    G + + N ++    
Sbjct: 101 EQARVAILFMDITERKRVERELAESEARFSALADGLPMPVWVLDAQGVVRFVNSAYGEFF 160

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
                  ++I+ G  +        D+       L  S +      A L   + +      
Sbjct: 161 G------LDISSGTVSAWSELLHPDDLPTFQFELAASLQEQRGLRA-LVRARRHDGQWRW 213

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRI---NKRKMEIEVMQLCSILEATS 462
           +      + +     +   G  P+  + R     + ++        +  E+ +
Sbjct: 214 IEMTATPRYSADGRFIGLAGSSPDVTEQREIELAREQLLESERSARNEAESMA 266



 Score = 47.7 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/132 (12%), Positives = 43/132 (32%), Gaps = 13/132 (9%)

Query: 457 ILEATSDGIAIINR--------EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
           I      G  +I+         + +I +TN A  +  G     +        L ++    
Sbjct: 5   IFHNIDAGFCVIDMVFDGEQAVDYVIRTTNGAFERYTGLSPNALNV-SIRNLLPEHEQEW 63

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568
            + Y     + +    +         + +  S+       P  +  ++   DI+E K+ +
Sbjct: 64  FDRYGHVARTGNR---IHFEMQAKALK-RWYSVDAFRVGQPEQARVAILFMDITERKRVE 119

Query: 569 NKLSHAKKIAEK 580
            +L+ ++     
Sbjct: 120 RELAESEARFSA 131


>gi|91772161|ref|YP_564853.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanococcoides burtonii DSM 6242]
 gi|91711176|gb|ABE51103.1| HATPase domain-containing multisensor signal transduction histidine
           kinase [Methanococcoides burtonii DSM 6242]
          Length = 763

 Score =  342 bits (878), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 103/367 (28%), Positives = 185/367 (50%), Gaps = 12/367 (3%)

Query: 452 MQLCSILEATSDGIAII-NREGI-ILSTNRAVSKLFGYPVEDIL--RKPFTVFLEQNTPS 507
            ++ +I+E +   +    N +G  +   +  +++ FGY  +D L  +  +   +  +   
Sbjct: 391 EEMNNIIEHSPVTVFKWKNEKGWPVELVSENITQ-FGYNADDFLSKQMDYADIIHPDDVG 449

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISE 563
            +   L E L   +   + +     +K  ++  +          +         + +I++
Sbjct: 450 RVEDRLGESLKRHVPNFISQ-YRIISKSGEIFWVEEQTLSHADQNGDTKYLHGIIVNITK 508

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            K+ ++ +  AK  AE  +  KS+FLA +SHE+RTPL +IIGFSE++  +  G + N + 
Sbjct: 509 RKKAEDMVIQAKLDAEATNRTKSEFLANMSHELRTPLNSIIGFSELLLEKTIGDINN-KQ 567

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
             Y + I   G  +L ++N++LDISK+ESGKM LH++  ++   +S+ + L+   A   R
Sbjct: 568 ERYISNILTGGQHLLSLINEILDISKVESGKMELHYDEFAISSMISDIVILLNPLAITNR 627

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
           I I T     +  I AD   +KQI  N+LSNAI FT   G I I      ++ + + ++D
Sbjct: 628 IEIITDIDKRLSLINADKIKIKQILYNLLSNAIKFTNENGTISIEAIF-DDKLMQICIKD 686

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
            G+G+    +EK  +PF QI ++   + +GTGLGL L K  V+ + G  ++ S   KG+ 
Sbjct: 687 NGIGIEKENIEKLFQPFQQIDSAASRKYQGTGLGLALVKNFVEMHGGNIWVDSEMGKGSA 746

Query: 804 IEIIFPL 810
                P+
Sbjct: 747 FTFTIPI 753


>gi|89902313|ref|YP_524784.1| PAS/PAC sensor hybrid histidine kinase [Rhodoferax ferrireducens
           T118]
 gi|89347050|gb|ABD71253.1| PAS/PAC sensor hybrid histidine kinase [Rhodoferax ferrireducens
           T118]
          Length = 1007

 Score =  342 bits (878), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 118/803 (14%), Positives = 264/803 (32%), Gaps = 93/803 (11%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGM--------------RLCDVSDILHIDPNNHIG 134
            D  G ++  +    + +G  A  ++                R  ++S  L         
Sbjct: 51  TDERGVIQIFNIGAERMLGYAAADVLNKITPADISDPQELILRATELSAELETAIAPGFE 110

Query: 135 DLL---KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN 191
            L+    R      + T    +G+    P  ++   + +      G+   G  +  R   
Sbjct: 111 ALVFKASRGIEDIYELTYIRKDGS--RFPAIVSVTALRNARGTVIGYLLIGTDNTARKQV 168

Query: 192 DPRAL-------------------GKRLDKKFSHLHEIKKGHSSVEKEKYD------IFS 226
           +                        +  ++KF+                        +  
Sbjct: 169 EAERQHLLKEQEWTNQQLHQANLTLRESEEKFAVTLHSIGDAVIATDAAARVTLLNPLAE 228

Query: 227 QQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE---QEDFHTINLNQY 283
           + +     +   +         +K+  L        T    ++            + ++ 
Sbjct: 229 RLTGWTQAQASGRPVDEIFTIINKETRLSATVPVAETLAHGTIQGLANHTVVIARDGSEC 288

Query: 284 TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV------YS 337
                   +++   +    +      +      +    +   +                 
Sbjct: 289 DIADSCAPIRDRDGQVIGAVLVFRDVTEEYAAQQALRDSTALIQTILNTVADGIITIYAR 348

Query: 338 HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397
            G +   NP+   +  Y  ++ +        LL      D           SD    A  
Sbjct: 349 GGMIKTVNPAAERMFGYSGIELVGQNFS---LLIPELDQDQRNGSLEYYSASDEARAAGL 405

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
            R    +    +   M                  GI  +    +  +  +        +I
Sbjct: 406 GREVLGRRQDGSVFPMEM--AVSEMWLGGERYFTGILRDTTARKQAEEALLQAGALQSAI 463

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK-PFTVFLEQNTPSVMNHYLTEI 516
             + +      + +G+I   N    ++ GY   +++ K       +          L+  
Sbjct: 464 FNSANFSSIATDAKGVIQIFNVGAERMLGYTAAEVMNKVTPADISDSKEVIARAKALSLE 523

Query: 517 LSLDLRQTLE-------------KITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMH 559
           L   +    E                    K+       + +  L  +      Y L   
Sbjct: 524 LGTQIEPGFEALVFKASRGIEDIYELTYIRKDGSRFPAVVSVTALRDAQGVIIGYLLIGT 583

Query: 560 DISEWKQEKNK--------------LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
           D +  K+ + +              L  A++ A+K +  KS+FL+ +SHE+R+PL AI+G
Sbjct: 584 DNTARKRVEAERAVLDRALRDKNVELESARQAADKANLAKSEFLSSMSHELRSPLNAILG 643

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
           F++++  +   P          + I   G  +L+++N++LD++ IESGK++L  EP++L 
Sbjct: 644 FAQLM--ESGVPPPTATQKASIDQILHGGWYLLELINEILDLALIESGKLSLSMEPIALP 701

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725
           + + +  ++++  A +  I I     N    + AD   VKQ+ +N++SNAI +   GG +
Sbjct: 702 DVLLDCQAMIEPQAQKSDIRISFPQFNAPCFVNADRTRVKQVIVNLMSNAIKYNRVGGTV 761

Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
            ++    + + + + VRD+G G++  ++ +  +PF ++   +    EGTG+GL ++K +V
Sbjct: 762 EVTCKKVAAQRLRISVRDSGEGLSAEKVTQLFQPFNRL-GQEVGSEEGTGIGLVVSKRLV 820

Query: 786 DANMGKFYIFSTPAKGTLIEIIF 808
           +   G+    S    G++     
Sbjct: 821 ELMGGEIGAQSIVGTGSVFWFEL 843



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/184 (14%), Positives = 51/184 (27%), Gaps = 18/184 (9%)

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
           +  P+        PE +     +  +        +IL + +      +  G+I   N   
Sbjct: 5   DPIPDLPKAVAGTPEGLTEFRRQEALLKTGALQNAILNSANFSSIATDERGVIQIFNIGA 64

Query: 482 SKLFGYPVEDILRK-PFTVFLEQNTPSVMNHYLTEILSLDLRQTLE-------------K 527
            ++ GY   D+L K       +     +    L+  L   +    E              
Sbjct: 65  ERMLGYAAADVLNKITPADISDPQELILRATELSAELETAIAPGFEALVFKASRGIEDIY 124

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
                 K+       + +  L  +      Y L   D +  KQ + +  H  K  E  + 
Sbjct: 125 ELTYIRKDGSRFPAIVSVTALRNARGTVIGYLLIGTDNTARKQVEAERQHLLKEQEWTNQ 184

Query: 584 HKSD 587
               
Sbjct: 185 QLHQ 188


>gi|223940722|ref|ZP_03632560.1| multi-sensor hybrid histidine kinase [bacterium Ellin514]
 gi|223890613|gb|EEF57136.1| multi-sensor hybrid histidine kinase [bacterium Ellin514]
          Length = 1463

 Score =  342 bits (878), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 99/746 (13%), Positives = 234/746 (31%), Gaps = 65/746 (8%)

Query: 92   HGYLKEISEELPKTIGNYAFKM--IGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
               +  +S    +  G     +        +              +  +    +  +  +
Sbjct: 613  EAEVLYVSPAYEEIWGRTRESLYQSPKAWMENIHPEDRQRVADAVEKKQVIGQYDEEYRI 672

Query: 150  WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
               +G      I     PI         +R  G+              +    +   + +
Sbjct: 673  IRPDGEIR--WISDRGFPIKDETGHI--YRIAGVAQDITRRKQAEQAVQESQARLQAILD 728

Query: 210  IKKGHSSVEKEKYDIFSQQ---SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
                   ++  +          +   HL  +  +  +   +                 ++
Sbjct: 729  NSPNLVFMKDLEGRYLLVNRQFAKSFHLTREQIIGRMDTEFLPAAQAALYRGNDRKVLKQ 788

Query: 267  SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
              L   E   T+         +   L+++S             +     +E    +   +
Sbjct: 789  GEL--MEFTETMENPHRISVVHKFPLRDSSGTIKALCGIATDITERILVEEQLRRSESLL 846

Query: 327  DKCP----IPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
                    +  + Y     L   +P+ L + + +S +     G L        +   +  
Sbjct: 847  GHAQRIAGLGSWSYDFATRLVEWSPATLEIFRLQSGEF---PGTLEAFF--EMVHPEDRQ 901

Query: 382  KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
              +              + + I     +   +        ++    + + G   +  ++R
Sbjct: 902  GLIRAQEEALRGGKMIDQEYRIVLRDGSVRNVQERGEVVCDEHGVPLKRVGSILDVTESR 961

Query: 442  INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
              ++ +  +     ++L+   D I + N    ++  N++  +L+GY + +   +  T  +
Sbjct: 962  RKEQLLREQ----AALLDKAQDAILVRNMNDEVVYWNKSAERLYGYTMSEAAGRKITDLI 1017

Query: 502  EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLT 557
                 ++ +     +L+              TK  + + +      +             
Sbjct: 1018 Y-KDTTIFDETRQALLTKGE---WHGEIAQVTKSGREVLVEARWTLVRNDQGEPQSVLAI 1073

Query: 558  MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
              DI+E K+ +N+   A+++              ++H++   L  I+   E+++++    
Sbjct: 1074 NTDITEKKKLENQFLRAQRM-----ESIGTLAGGIAHDLNNVLAPILMSCELLEHE---- 1124

Query: 618  LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
            L +    E  + I        D+V  +L  ++   G+  L  +P  L   + + +     
Sbjct: 1125 LRDAEIREVISSIKTGAQRGADLVRQVLSFARGVEGR-RLALQPRHLIREIEQIMGETFP 1183

Query: 678  YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT---HTSN 734
                K I +  S    +  ++ D   + Q+ LN+  NA    P+GGQ+ +S        N
Sbjct: 1184 ----KSIQVDVSPDPELWMVVGDPTQLHQVLLNLCVNARDAMPAGGQLTLSAGNVLREEN 1239

Query: 735  -----------EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
                         V++RV DTG G+     EK   PF          G+GTGLGL    A
Sbjct: 1240 QLMAGLNSQATAYVVIRVADTGTGIPPELREKIFDPFFTTK----EVGKGTGLGLSTTLA 1295

Query: 784  MVDANMGKFYIFSTPAKGTLIEIIFP 809
            ++ ++ G  ++ S P +G+  EI  P
Sbjct: 1296 IIKSHDGFIHVSSEPGRGSTFEIYLP 1321



 Score =  161 bits (408), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 53/513 (10%), Positives = 141/513 (27%), Gaps = 38/513 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           I+  G + E +  + K +G    + + ++  D      ++        + +   +  +  
Sbjct: 359 IELDGRIVEGNPAVCKMLGYTCDEFVRLKPADFIHPDSMNLFYTFVQEVGQGRRFNCEAK 418

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS--- 205
               +GT   +P+++   P   R R         IV             ++ +++     
Sbjct: 419 GVRKDGT--VIPVEVQGSPFSYRGRP----HLLSIVRDVSARRTAEESLRKNEEELRVTF 472

Query: 206 -------HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
                   L  +                            + +   +  A          
Sbjct: 473 ENAAISIALVNMAGHPVKCNPALEKFLGYSEKELRRMSFAEFTHPEDVEAD-----MVLY 527

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP----SLSAY 314
             L+         ++ F   N      +     ++   +E    +             A 
Sbjct: 528 RELMAGTRDHYEIEKRFIHRNGEIKWGRLTASLVRGAGQEPQYGIGMVEDITEYKRSRAE 587

Query: 315 FDEGENLTPETVDKCPIPFFVYSH--GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
             E E+   +  +     F++ +     + Y +P++  +         +           
Sbjct: 588 LRESEDRFKQLAENIQEVFWMANTVEAEVLYVSPAYEEIWGRTRESLYQSPKAW-----M 642

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
             +   +  +        +           I+ + E    ++   F   ++        G
Sbjct: 643 ENIHPEDRQRVADAVEKKQVIGQYDEEYRIIRPDGE-IRWISDRGFPIKDETGHIYRIAG 701

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
           +  +    +  ++ ++    +L +IL+ + + + + + EG  L  NR  +K F    E I
Sbjct: 702 VAQDITRRKQAEQAVQESQARLQAILDNSPNLVFMKDLEGRYLLVNRQFAKSFHLTREQI 761

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDL--RQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
           + +  T FL     ++      ++L        T                LR     +  
Sbjct: 762 IGRMDTEFLPAAQAALYRGNDRKVLKQGELMEFTETMENPHRISVVHKFPLRDSSGTIKA 821

Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
                    DI+E    + +L  ++ +      
Sbjct: 822 ---LCGIATDITERILVEEQLRRSESLLGHAQR 851



 Score =  110 bits (276), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 86/302 (28%), Gaps = 14/302 (4%)

Query: 286 KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYA 344
           +      +N S              +       E       +        +   G +   
Sbjct: 309 RLLNALAENISFAVESLEKEMERGRVEMALRMSEEQYRNVFETVAEGLTIIELDGRIVEG 368

Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
           NP+   +  Y   + +        L  A  +  ++        +        +     ++
Sbjct: 369 NPAVCKMLGYTCDEFV-------RLKPADFIHPDSMNLFYTFVQEVGQGRRFNCEAKGVR 421

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
            +      +          +        I  +    R  +  +     +L    E  +  
Sbjct: 422 KDG---TVIPVEVQGSPFSYRGRPHLLSIVRDVSARRTAEESLRKNEEELRVTFENAAIS 478

Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL-DLRQ 523
           IA++N  G  +  N A+ K  GY  +++ R  F  F              E+++      
Sbjct: 479 IALVNMAGHPVKCNPALEKFLGYSEKELRRMSFAEFTHPEDVEADMVLYRELMAGTRDHY 538

Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT--MHDISEWKQEKNKLSHAKKIAEKE 581
            +EK  +    E K   L   + +            + DI+E+K+ + +L  ++   ++ 
Sbjct: 539 EIEKRFIHRNGEIKWGRLTASLVRGAGQEPQYGIGMVEDITEYKRSRAELRESEDRFKQL 598

Query: 582 SS 583
           + 
Sbjct: 599 AE 600



 Score = 97.0 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 51/529 (9%), Positives = 128/529 (24%), Gaps = 48/529 (9%)

Query: 85   FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTW- 143
              +  D  G    ++ +  K+      ++IG    +                L R N   
Sbjct: 733  LVFMKDLEGRYLLVNRQFAKSFHLTREQIIGRMDTEFLP--------AAQAALYRGNDRK 784

Query: 144  ---YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
                G+   +     N +    +   P+   +         GI              +R 
Sbjct: 785  VLKQGELMEFTETMENPHRISVVHKFPLRDSSGTIKAL--CGIATDITERILVEEQLRRS 842

Query: 201  DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL------RMKNKVSSLTEYYAHKDDVL 254
            +    H   I    S        +         +           + +  E    +D   
Sbjct: 843  ESLLGHAQRIAGLGSWSYDFATRLVEWSPATLEIFRLQSGEFPGTLEAFFEMVHPEDRQG 902

Query: 255  KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
                          + ++      + +    ++    + +      + +      + S  
Sbjct: 903  LIRAQEEALRGGKMIDQEYRIVLRDGSVRNVQERGEVVCDEHGVPLKRVGSILDVTESRR 962

Query: 315  FDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
             ++        +DK      V + +  + Y N S   L  Y   +          +    
Sbjct: 963  KEQLLREQAALLDKAQDAILVRNMNDEVVYWNKSAERLYGYTMSEA-AGRKITDLIYKDT 1021

Query: 374  KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
             + D      +            +             + +        N   E      I
Sbjct: 1022 TIFDETRQALLTKGEWHGEIAQVT--------KSGREVLVEARWTLVRNDQGEPQSVLAI 1073

Query: 434  EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII--LSTNRAVSKLFGYPVED 491
              +  + +  + +  +   ++ SI   T  G    +   ++  +  +    +L  + + D
Sbjct: 1074 NTDITEKKKLENQF-LRAQRMESI--GTLAGGIAHDLNNVLAPILMS---CELLEHELRD 1127

Query: 492  ILRKPFTVFLEQNTPSVMNHYLTEILS-----LDLRQTLEKITLGSTKE---EKLLSLRI 543
               +     ++          + ++LS        R  L+   L    E    +     I
Sbjct: 1128 AEIREVISSIKTGAQRG-ADLVRQVLSFARGVEGRRLALQPRHLIREIEQIMGETFPKSI 1186

Query: 544  IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
             +   P    + +   D ++  Q    L    + A       +     V
Sbjct: 1187 QVDVSPDPELWMVVG-DPTQLHQVLLNLCVNARDAMPAGGQLTLSAGNV 1234



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 83/204 (40%), Gaps = 11/204 (5%)

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
                 ++++    +  + +   Q  ++ E  ++G+ II  +G I+  N AV K+ GY  
Sbjct: 321 AVESLEKEMERGRVEMALRMSEEQYRNVFETVAEGLTIIELDGRIVEGNPAVCKMLGYTC 380

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI--IIKK 547
           ++ +R     F+  ++ ++   ++ E+      +       G  K+  ++ + +      
Sbjct: 381 DEFVRLKPADFIHPDSMNLFYTFVQEV---GQGRRFNCEAKGVRKDGTVIPVEVQGSPFS 437

Query: 548 LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK--ESSHKSDFLARVS-HEIR-TP-LTA 602
                     + D+S  +  +  L   ++      E++  S  L  ++ H ++  P L  
Sbjct: 438 YRGRPHLLSIVRDVSARRTAEESLRKNEEELRVTFENAAISIALVNMAGHPVKCNPALEK 497

Query: 603 IIGFSEV-IKNQRFGPLGNPRYIE 625
            +G+SE  ++   F    +P  +E
Sbjct: 498 FLGYSEKELRRMSFAEFTHPEDVE 521



 Score = 40.4 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 17/149 (11%), Positives = 45/149 (30%), Gaps = 15/149 (10%)

Query: 449 IEVMQLCSILEATSDGIAIINRE----GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
              M+L  IL+ + D +A +  E      ++  N    +  G     + ++         
Sbjct: 20  EAEMRLRLILDHSLDMMAFVRVEPGPVFRVVYINEKYMEGIGRSGFALTKEDLMNKTVDE 79

Query: 505 TPSVMNH--------YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556
               +           L    +    +      +  T + +     ++      S   +L
Sbjct: 80  VLRKIQASPSLTEQVLLRYSEAARSMRPQRYEEIIETTQGRYYGESVLTPGADSSGGCAL 139

Query: 557 TM---HDISEWKQEKNKLSHAKKIAEKES 582
            +    +++E K  + K+    ++    S
Sbjct: 140 ILYTSREVTERKLAEKKIQRLNRLYAVSS 168


>gi|167746413|ref|ZP_02418540.1| hypothetical protein ANACAC_01123 [Anaerostipes caccae DSM 14662]
 gi|167653373|gb|EDR97502.1| hypothetical protein ANACAC_01123 [Anaerostipes caccae DSM 14662]
          Length = 1116

 Score =  342 bits (878), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 113/534 (21%), Positives = 210/534 (39%), Gaps = 44/534 (8%)

Query: 318 GENLTPETVDKCPIPFFVYSHG---NLFYANPSFLLLTKYKSVDDIEIAGG--LSTLLDA 372
             +      +  P    + S          N   + L KY   D  +   G  +  L+  
Sbjct: 318 QADYIGHLYNAVPEGIALISVDKPYRFLQLNRQGMQLLKYTEGDVEDTVLGEPIENLIHP 377

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
                   +  +    +D        R+            ++ I     ++  E +    
Sbjct: 378 DDYDRLVKM--IETADTDGRKSTFEFRVQR---AGGEYFWVSGILERTFDENGEPV-FVA 431

Query: 433 IEPEDVDTRINKRKMEIEVMQLC-SILEATSDG---IAIIN---REGIILSTNRAVSKLF 485
              +  + ++ +++ E E++Q   +++ A S+    I  IN        +     +    
Sbjct: 432 AFHDVTEEKLAEQEAEREILQERITLVGAISNAYPVIISINLTEDTLNFIYVKPGLMIGL 491

Query: 486 GYPVEDI-LRKPFTVFLEQNTPSVMN-----HYLTEILSLDLRQTLEKITLGSTKEEKLL 539
           G       L +   + +               YLTE L  +  +           + +  
Sbjct: 492 GQQKSYSRLFQDMALTVHPEHADEFRHRFGTEYLTETLGHEKDEVF-LEVRQKLTDGRYH 550

Query: 540 SLRIIIK----KLPFSSCYSLTMHDISEWKQEKNK-----LSHAKKIAEKESSHKSDFLA 590
            +   I              L     ++ ++ + +     L  A   A   +  K  FL+
Sbjct: 551 WISTQIINVDNPYSNDKLAILISR-RTDEQRYEEEQQRQALQTALDNANAANKAKGQFLS 609

Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650
            +SH+IRTP+ AIIG S +            R +E    I+ SG  +L ++ND+LD+SKI
Sbjct: 610 NMSHDIRTPMNAIIGMSAIASAHLD---DRERIMECLGKINLSGKHLLSLINDILDMSKI 666

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF-ANNIPRILADLRSVKQIAL 709
           ESGK++L  EP +L E +++ + L++  A+ +RI ++    +     ++ D   ++Q+ +
Sbjct: 667 ESGKLSLRKEPFNLAELITDTVELIRPQADSRRIRVKVRLRSLKNENVIGDPLRIRQVCI 726

Query: 710 NILSNAIHFTPSGGQIIISTTHTSN-----EEVILRVRDTGVGMTNYELEKAMKPFGQIP 764
           NILSNA+ +TP GG+I I      +     +  I    DTG+GM    L+K   PF +  
Sbjct: 727 NILSNAVKYTPEGGKIDIQVRQEDSVRREYQNFIFCCSDTGIGMDRQFLKKLFHPFERAS 786

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
           +S   +  GTGLG+ + K ++D   G   + S+P KG++  +  PL       D
Sbjct: 787 DSTSSKMTGTGLGMAITKNIIDLMSGDIQVESSPGKGSVFTVTLPLKLQDVSQD 840


>gi|16079368|ref|NP_390192.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221310229|ref|ZP_03592076.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221314552|ref|ZP_03596357.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221319474|ref|ZP_03600768.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221323750|ref|ZP_03605044.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|466195|sp|P35164|RESE_BACSU RecName: Full=Sensor histidine kinase resE
 gi|410142|gb|AAA67498.1| ORFX18 [Bacillus subtilis subsp. subtilis str. 168]
 gi|2634746|emb|CAB14243.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 589

 Score =  342 bits (878), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 88/364 (24%), Positives = 156/364 (42%), Gaps = 24/364 (6%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            +  E  QL +IL + +DG+  IN +G IL TN    +           +   +    N 
Sbjct: 247 ALNQEKEQLSNILSSMADGVITINIDGTILVTNPPAERFL---QAWYYEQNMNIKEGDNL 303

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
           P          +S +  Q +E    G       + L   +            + D++E +
Sbjct: 304 PPEAKELFQNAVSTEKEQMIEMTLQGR----SWVLLMSPLYAESHVRGAVAVLRDMTEER 359

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           +                  + DF+A VSHE+RTP++ + G+SE I +            E
Sbjct: 360 RL--------------DKLREDFIANVSHELRTPISMLQGYSEAIVDDI--ASSEEDRKE 403

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
            A  I      +  +VNDLLD++++ESG   LH+E ++++E + + I      A EK I 
Sbjct: 404 IAQIIYDESLRMGRLVNDLLDLARMESGHTGLHYEKINVNEFLEKIIRKFSGVAKEKNIA 463

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +    +      + D   ++Q+  N++ NA+  T +GG + IS     +  + + ++D+G
Sbjct: 464 LDHDISLTEEEFMFDEDKMEQVFTNLIDNALRHTSAGGSVSISVHSVKDG-LKIDIKDSG 522

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
            G+   +L    + F +   ++     GTGLGL + K +V+A+ G   + S   KGT   
Sbjct: 523 SGIPEEDLPFIFERFYKADKARTRGRAGTGLGLAIVKNIVEAHNGSITVHSRIDKGTTFS 582

Query: 806 IIFP 809
              P
Sbjct: 583 FYIP 586


>gi|108761502|ref|YP_631002.1| sensory box histidine kinase/response regulator [Myxococcus xanthus
           DK 1622]
 gi|108465382|gb|ABF90567.1| sensory box histidine kinase/response regulator [Myxococcus xanthus
           DK 1622]
          Length = 1077

 Score =  342 bits (878), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 108/648 (16%), Positives = 221/648 (34%), Gaps = 31/648 (4%)

Query: 175 FSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL 234
             G     +V + R+    +                  G                 P   
Sbjct: 288 LDGLAQHAVVDLGRITEATKQAVAANVPVLLESVPSLLGARQFGPWPEPTEKALVLPLRR 347

Query: 235 RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294
              + +  +                         L        +   +  +++ +   + 
Sbjct: 348 TRTDSLRGVVVLGISPRLRFDDTYRQFFEDLARELATH---LAVEQEKRAEREAYTHAKQ 404

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKY 354
              ++   ++ R     +    E          +  +    Y  G +   +   L     
Sbjct: 405 ARAQAEAEVARRAQAEAALRASEERLRMALAAGQLGVVELQYERG-VLSWDERALQHLGL 463

Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
                   +  L          D N  +  +         A         W+      + 
Sbjct: 464 PP----GKSPTLKEAAARIHPDDVNRARRTIEQALRPGAEAIRLECRVQGWDGVQRFLLA 519

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII 474
            +     +   +     G   +  + R  +R    E  +L +I+E + D I + +  G  
Sbjct: 520 MVKTH-FDAQGQPDRVVGALQDVTEQRSAER----ERERLATIVEQSPDFIGVGDPSGRA 574

Query: 475 LSTNRAVSKLFGYPVEDILRK-PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
           +  N A  +L G  +++ + +     F      + ++ ++   +    R+          
Sbjct: 575 VWVNDAGRRLLGLGLDEDITRYHLRDFFLAEDQTYVDEHIAAAILQGGRREGAFRFRHFP 634

Query: 534 KEE----KLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH-------AKKIAEKES 582
             E    +  +  ++          +    DI   K+ + +          A++ AE+ +
Sbjct: 635 TGEPIAAQYHTFALVEHDTQRQMGIATVGRDIRAQKRLEAERERLLARERVAREEAEEAN 694

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
             K +FLA VSHE+RTPLTA++G+ +++   R G L   +       ++R+      +V 
Sbjct: 695 RLKDEFLATVSHELRTPLTAVLGWVQML---RTGTLPPEKRERALATVERNARAQGQLVE 751

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702
           DLLD+S+I +GK+ L    V + + V   +  ++  A  K I I+ +  +    I+ D+ 
Sbjct: 752 DLLDVSRIMTGKLKLDVSSVDVSQVVEAVLESLRPAAEAKGIRIQAALDSG-GTIMGDVS 810

Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
            ++Q+  N+LSNA+ FTP GG++ +      N  V + V DTG G++   L    + F Q
Sbjct: 811 RLQQVVWNLLSNAVKFTPKGGRVQVLVERR-NSSVEITVADTGQGISPQFLPHVFERFRQ 869

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFP 809
              S   +  G GLGL + + +V+ + G     S    +G    +  P
Sbjct: 870 ADGSTTRKAGGLGLGLAIVRHLVELHGGTVMATSEGEGRGATFIVSLP 917



 Score = 41.6 bits (96), Expect = 0.54,   Method: Composition-based stats.
 Identities = 47/417 (11%), Positives = 102/417 (24%), Gaps = 45/417 (10%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGM-RLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147
           D  G    +++   + +G    + I    L D          + HI   + +     G  
Sbjct: 569 DPSGRAVWVNDAGRRLLGLGLDEDITRYHLRDFFLAEDQTYVDEHIAAAILQGGRREGAF 628

Query: 148 TLWP-IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIV-HVNRVDNDPRALGKRLDKKFS 205
                  G  +       AL  +   R+     G   V    R      A  +RL  +  
Sbjct: 629 RFRHFPTGEPIAAQYHTFALVEHDTQRQM----GIATVGRDIRAQKRLEAERERLLARER 684

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
              E  +  + ++ E     S +   P L        +        +  +     +  + 
Sbjct: 685 VAREEAEEANRLKDEFLATVSHELRTP-LTAVLGWVQMLRTGTLPPEKRERALATVERNA 743

Query: 266 ESSLPEQEDFHTIN------LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
            +     ED   ++      L           +     ES    +      + A  D G 
Sbjct: 744 RAQGQLVEDLLDVSRIMTGKLKLDVSSVDVSQVVEAVLESLRPAAEAKGIRIQAALDSGG 803

Query: 320 NLTPETVDKCPIPFFVYSHGNLFYA-----NPSFLLLTKYKSVDDIEIAG-GLSTLLDAP 373
            +  + V +     +      + +          +          +   G G+S      
Sbjct: 804 TIMGD-VSRLQQVVWNLLSNAVKFTPKGGRVQVLVERRNSSVEITVADTGQGISPQFLPH 862

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
                         ++    +  +   H ++ +    +A +      A           +
Sbjct: 863 VFERFRQADGSTTRKAGGLGLGLAIVRHLVELHGGTVMATSEGEGRGATFIVSLPQAVAL 922

Query: 434 EPEDVDTRINKRKMEIE----------------------VMQLCSILEATSDGIAII 468
             E +     +  ++ +                         L SI+EA   GI   
Sbjct: 923 RREVLVPPTLRGPLQEQDIPCPPQLASLRVLVVDDEEDTRELLRSIIEACG-GIVTT 978


>gi|186683692|ref|YP_001866888.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC
           73102]
 gi|186466144|gb|ACC81945.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC
           73102]
          Length = 684

 Score =  342 bits (878), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 88/386 (22%), Positives = 176/386 (45%), Gaps = 23/386 (5%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            ++     +L S+   +  GI  I+ EG    TN     + G    + L K +   +   
Sbjct: 146 AELRQSEERLRSLSTCSPVGIFEIDTEGGCRYTNPRYQIICGLKATESLEKSWLESVHPE 205

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHD 560
                    +  +     +   +     T +  +  +++    +         Y  T+ D
Sbjct: 206 DRERAVASWSNYICEG--RDYSEEFRFQTAQGIIRWVQVRSSPMLSGQGELLGYVGTLED 263

Query: 561 ISEWKQEKNKLSHA------KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
           I+E KQ +   +        ++ AE  +  K +FLA +SHE+RTPLT+++G+S+++++++
Sbjct: 264 ITERKQAEEVRAQVIREQTARQEAEAANRMKDEFLAVLSHELRTPLTSMLGWSKILRSKK 323

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                  R       I+R+    + ++ D+LD+S+I  G++ L+   V+L   +  A+  
Sbjct: 324 LDDKATSRA---LEAIERNAISQMQLIEDILDVSRIIRGQLRLNVSAVNLISVMEAALEA 380

Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH--- 731
           V+  A  K I + T    ++  +  D   ++QI  N+L+NAI FTP GG++ ++ +    
Sbjct: 381 VRPLAEPKEIQLNTVLDTSVGSVYGDPARLQQIVWNLLTNAIKFTPKGGRVEVNLSIVYG 440

Query: 732 ----TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
               T+ +   ++V DTG+G+++  L K  + F Q  ++      G GLGL + + +V+ 
Sbjct: 441 EEQQTTQKYAQIQVIDTGIGISSEFLPKVFERFRQADSTTTRSHNGLGLGLAIVRHLVEL 500

Query: 788 NMGKFYIFS-TPAKGTLIEIIFPLYD 812
           + G  +  S    +G    +  PL  
Sbjct: 501 HKGTIFAQSPGSGQGATFTVRLPLLQ 526



 Score = 55.4 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 36/408 (8%), Positives = 104/408 (25%), Gaps = 31/408 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + ID  G  +  +       G  A + +     +       +           +   Y 
Sbjct: 166 IFEIDTEGGCRYTNPRYQIICGLKATESLEKSWLESVHPEDRERAVASWSNYICEGRDYS 225

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +   +      +   + + + P+ S   E  G+   G +           +  ++ ++ +
Sbjct: 226 EEFRFQTAQGIIR-WVQVRSSPMLSGQGELLGY--VGTLEDITERKQAEEVRAQVIREQT 282

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
              E +  +   ++    +  +   P    +       ++    K      E        
Sbjct: 283 ARQEAEAANRMKDEFLAVLSHELRTPLTSMLGWSKILRSKKLDDKATSRALEAIERNAIS 342

Query: 266 ESSLPEQ-------------------EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
           +  L E                         +       +      +       +     
Sbjct: 343 QMQLIEDILDVSRIIRGQLRLNVSAVNLISVMEAALEAVRPLAEPKEIQLNTVLDTSVGS 402

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
            +   +       NL    +   P    V  + ++ Y         KY  +  I+   G+
Sbjct: 403 VYGDPARLQQIVWNLLTNAIKFTPKGGRVEVNLSIVYGEEQ-QTTQKYAQIQVIDTGIGI 461

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
           S+                     +   +  +   H ++ ++    A +      + Q   
Sbjct: 462 SSEFLPKVFERFRQADSTTTRSHNGLGLGLAIVRHLVELHKGTIFAQS----PGSGQGAT 517

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG---IAIINRE 471
              +  +  ++   R N+   E     + S + +T      + +++ E
Sbjct: 518 FTVRLPLLQDNRGNRGNRENREAAEG-ISSSVASTPLAGLKVLVVDDE 564


>gi|197119323|ref|YP_002139750.1| HAMP/PAS domain-containing phosphate sensor histidine kinase
           [Geobacter bemidjiensis Bem]
 gi|197088683|gb|ACH39954.1| phosphate sensor histidine kinase, HAMP and PAS domain-containing
           protein [Geobacter bemidjiensis Bem]
          Length = 584

 Score =  342 bits (878), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 96/415 (23%), Positives = 179/415 (43%), Gaps = 27/415 (6%)

Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458
           RL T             I  +  ++  E           ++ ++    +  E  QL +IL
Sbjct: 196 RLATGAQRIGRGEFGARIAVQSQDEMGELAHVMNEMSGRIERQLEL--ISSEKNQLDAIL 253

Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
               +G+ + +R+ ++   N A   +F     ++  +P            +     E+LS
Sbjct: 254 NGMGEGVMVTDRDAVVTLVNPAFCTMFA-TGAELQGRPLLQITRHPD---LYAACREVLS 309

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISEWKQEKNKLSHAKKI 577
               Q  E    G     K + +  +  +            HDIS +K+ +         
Sbjct: 310 ARQEQHQEIALAG----GKTVLVHWVPLRDGDGLQGAVAVFHDISAFKRVE--------- 356

Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
                  + DF+A VSHE+RTP+T I G++E + +         R   +   I    + +
Sbjct: 357 -----KIRRDFVANVSHELRTPVTVIKGYAETLLSGALAA-DPERAERFLLIIQNHADRL 410

Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697
             +V DLL +S++ESG+M +  +PV+LDEA+ +A+ LV     EK + +          +
Sbjct: 411 SGLVRDLLTLSELESGEMGMQLKPVALDEAIRQALLLVGQRGEEKGVQLEQPAGEAGLTV 470

Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757
            AD   ++Q+ +N+L NAI ++ +G  + + T     + V + VRD+G+G+   +L +  
Sbjct: 471 QADRGRLEQVLINLLDNAIKYSETGKSVGVETARE-GDLVRVSVRDSGIGIPEKDLPRLF 529

Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
           + F ++  ++     GTGLGL + K +V A+ G   + S   KG++     P+  
Sbjct: 530 ERFYRVDEARSRDNGGTGLGLSIVKHIVQAHGGTLEVKSEQGKGSVFSFTLPIAR 584



 Score = 45.4 bits (106), Expect = 0.037,   Method: Composition-based stats.
 Identities = 26/264 (9%), Positives = 67/264 (25%), Gaps = 23/264 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            D    +  ++            ++ G  L  ++    +       ++L  +     +  
Sbjct: 263 TDRDAVVTLVNPAFCTMF-ATGAELQGRPLLQITRHPDL--YAACREVLSARQ-EQHQEI 318

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                 T L   +     P+   +    G     + H          + +  D   +  H
Sbjct: 319 ALAGGKTVLVHWV-----PLRDGDG-LQGA--VAVFHDISAFKRVEKIRR--DFVANVSH 368

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           E++   + ++     + S        R   +   + + +A +   L  +   L   E   
Sbjct: 369 ELRTPVTVIKGYAETLLSGALAADPERA-ERFLLIIQNHADRLSGLVRDLLTLSELESGE 427

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
           +  Q     ++          G          E  +     ++ A     E +    +D 
Sbjct: 428 MGMQLKPVALDEAIRQALLLVGQRGEEKGVQLEQPAGEAGLTVQADRGRLEQVLINLLDN 487

Query: 329 C--------PIPFFVYSHGNLFYA 344
                     +       G+L   
Sbjct: 488 AIKYSETGKSVGVETAREGDLVRV 511


>gi|34498958|ref|NP_903173.1| sensor/response regulator hybrid [Chromobacterium violaceum ATCC
           12472]
 gi|34332887|gb|AAQ61164.2| probable sensor/response regulator hybrid [Chromobacterium
           violaceum ATCC 12472]
          Length = 1229

 Score =  342 bits (878), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 116/612 (18%), Positives = 221/612 (36%), Gaps = 31/612 (5%)

Query: 216 SVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDF 275
            +E            PP L ++ + + L       D   +     +  S     P +   
Sbjct: 125 PLENFVKLPEPDDRAPPLLSVQREQTPLELICFLHDRDGRRLDAAVTMS-----PVKTSD 179

Query: 276 HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV 335
               +    +                    +     +A       L    +         
Sbjct: 180 KQGGVALIIRDITELVANERDIRKLNASLEQQVEQRTAEIRVFSALQNAILANAGYAIIA 239

Query: 336 -YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394
               G +   NP+   +  + + D I     L+   D  +L++        L +   +  
Sbjct: 240 TDRSGVITLFNPAAERMLGHAAADVIGRV-SLTRFHDPRELAERARQIGERLGQQIESGF 298

Query: 395 AA----------SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
            A               T      ++L +        N          I  +      ++
Sbjct: 299 DAIVSPSRQARSDESQWTYIRRNGSTLPVLLTISALENDDGHVTSYLVIAADITQREQDR 358

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED----ILRKPFTVF 500
            ++E+   QL    E    GI     +  +L  N  + +++  P       +    +   
Sbjct: 359 HQLELARDQLVKAAEVAELGIWSWTLDSDVLEWNDRMFEIYDLPRSFRDFGLYYNHWRGR 418

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII--KKLPFSSCYSLTM 558
           +  +    + H L   L        +   L    E + L +   I       +   +   
Sbjct: 419 VHPDDIERIEHQLQRALEGADAFNADFRILRQDGEARHLQVAARIEYGADGKAVRVTGIN 478

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            D++  ++ +  LS AK  A+  +  KS+FLA +SHEIRTP+ AI+G  ++I+       
Sbjct: 479 RDVTLEREREAWLSQAKSAADSANRAKSEFLANMSHEIRTPMNAILGMLQLIQQTGL--- 535

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
            N R  +YA+    +   +L I+ND+LD S++E GK+ L   P S+D+ + +   ++   
Sbjct: 536 -NARQADYADKASSAARTLLGILNDILDFSRVEVGKLTLAPHPFSIDKLLRDVGVIMSAN 594

Query: 679 ANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII---ISTTHTSN 734
             +K + +       +P  I AD   ++QI +N+  NAI FT  G  +I   ++    + 
Sbjct: 595 VGDKDVEVLFDIDPELPDWISADSLRLQQILINLSGNAIKFTERGEVVIAARLARRDEAG 654

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
             +   VRDTG+G+    L++  + F Q   S   R  G+GLGL +++ +V    G+  +
Sbjct: 655 LRIAFSVRDTGIGIAPEHLQRIFEGFSQAEASTARRYGGSGLGLAISQRLVALMGGQLTV 714

Query: 795 FSTPAKGTLIEI 806
            S   KG++   
Sbjct: 715 ESEEGKGSVFRF 726



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 32/405 (7%), Positives = 98/405 (24%), Gaps = 52/405 (12%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150
           A G +   +      +G  A + +G  L +   +   D        ++R+ T        
Sbjct: 99  ADGRIDSWNRGAENMLGYPAQETLGKPLENFVKLPEPDDRAPPLLSVQREQTPLELICFL 158

Query: 151 P-IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
              +G  L   + ++ +    +    +      I+             ++L+       E
Sbjct: 159 HDRDGRRLDAAVTMSPVKTSDKQGGVA-----LIIRDITELVANERDIRKLNASLEQQVE 213

Query: 210 IK------------------------------------KGHSSVEKEKYDIFSQQSPPPH 233
            +                                         +     D+  + S    
Sbjct: 214 QRTAEIRVFSALQNAILANAGYAIIATDRSGVITLFNPAAERMLGHAAADVIGRVSLTRF 273

Query: 234 LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDF--HTINLNQYTKKQYFGT 291
              +       +        +++    +++    +  ++  +     N +          
Sbjct: 274 HDPRELAERARQIGERLGQQIESGFDAIVSPSRQARSDESQWTYIRRNGSTLPVLLTISA 333

Query: 292 LQNNSKESFEYLSHRNHPSLSA----YFDEGENLTPETVDKCPIPFFVYSHGN-LFYANP 346
           L+N+      YL      +         +   +   +  +   +  + ++  + +   N 
Sbjct: 334 LENDDGHVTSYLVIAADITQREQDRHQLELARDQLVKAAEVAELGIWSWTLDSDVLEWND 393

Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
               +            G            D+       L R+     A +A    ++ +
Sbjct: 394 RMFEIYDLPRS--FRDFGLYYNHWRGRVHPDDIERIEHQLQRALEGADAFNADFRILRQD 451

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV 451
            E +  +      +     + +   GI  +    R  +  +    
Sbjct: 452 GE-ARHLQVAARIEYGADGKAVRVTGINRDVTLEREREAWLSQAK 495



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/268 (8%), Positives = 62/268 (23%), Gaps = 27/268 (10%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGM--------------RLCDVSDILHIDPNNHIG 134
            D  G +   +    + +G+ A  +IG               R   + + L     +   
Sbjct: 240 TDRSGVITLFNPAAERMLGHAAADVIGRVSLTRFHDPRELAERARQIGERLGQQIESGFD 299

Query: 135 DLLKRQNTWYGKTTLW---PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN 191
            ++          + W      G+ L V + ++AL   + +   + +       + + + 
Sbjct: 300 AIVSPSRQARSDESQWTYIRRNGSTLPVLLTISAL--ENDDGHVTSYLVIA-ADITQREQ 356

Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD 251
           D   L    D+        + G  S   +   +           +         YY H  
Sbjct: 357 DRHQLELARDQLVKAAEVAELGIWSWTLDSDVLEWNDRMFEIYDLPRSFRDFGLYYNHWR 416

Query: 252 DVLKTEKYP-------LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
             +  +                 +          +      +           ++     
Sbjct: 417 GRVHPDDIERIEHQLQRALEGADAFNADFRILRQDGEARHLQVAARIEYGADGKAVRVTG 476

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIP 332
                +L    +   +      D     
Sbjct: 477 INRDVTLEREREAWLSQAKSAADSANRA 504


>gi|118587761|ref|ZP_01545171.1| PAS domain protein [Stappia aggregata IAM 12614]
 gi|118439383|gb|EAV46014.1| PAS domain protein [Stappia aggregata IAM 12614]
          Length = 784

 Score =  342 bits (878), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 117/562 (20%), Positives = 222/562 (39%), Gaps = 49/562 (8%)

Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLF-YANP 346
              +L   +     +       +    +          +       F +       + + 
Sbjct: 231 VGTSLVLLAVIYGFFSQATRAEAADDMYAATRARIDTALTHGRCGLFDWDLSRGRMFWSS 290

Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
           S   L   +  DDI     ++ +     +      +         +          ++  
Sbjct: 291 SLYELLGREPKDDILSFADVADITHPDDIDLLGLAE-----HLLESGETLVDETFRMRHA 345

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
             + + +      ++          GI  +  +      +  +  ++L   +E  S+   
Sbjct: 346 DGSWIWLRARGEIQSEPGRAEPHLIGICIDITEQHELAEQSRMADLRLRDAIETISEAFV 405

Query: 467 IINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
           + N    ++  N     L   P   I    P+   +   + + +  +   +         
Sbjct: 406 LWNARNELVICNSNYQSLHSLPNSVIKPGTPYKDVMAAASNAEVAPHPVTLRQRGGAPDG 465

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL-------------- 571
                   ++ + L +    ++      +     DI+  K+ + KL              
Sbjct: 466 SYE--AQLEDGRWLQIS---ERRTKDGGFVSVGTDITALKKHEEKLVDSEKRLKATVTDL 520

Query: 572 ---------------------SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
                                   K  AE  +  KS+FLA +SHE+RTPL AIIGFS+++
Sbjct: 521 QKSRQTLEVQARQLVEMADKYQEEKTRAEAANKAKSEFLANISHELRTPLNAIIGFSDIM 580

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
             + FGP+G  RY +Y   I  SG  +L+++ND+LD+SKIE+G+M +  E V+  E+  +
Sbjct: 581 TQEMFGPVGTDRYSDYCKDIYSSGTYLLNVINDILDMSKIEAGRMTIETETVNASESAED 640

Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
           A  +V   A EK I + T    N+  + AD R++KQI LN+L+NA+ FTP  G + +   
Sbjct: 641 ASRIVTGAATEKNITVTTDVVENV-SVHADKRALKQILLNLLANAVKFTPDNGTVTLKAR 699

Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
               +++   V DTG+G++  ++E+  +PF Q+ N      +G+GLGL +A+++V+ + G
Sbjct: 700 PR-GDKLHFEVIDTGIGISERDIERLAQPFVQVENQFTKTHQGSGLGLAIARSLVELHGG 758

Query: 791 KFYIFSTPAKGTLIEIIFPLYD 812
              I S   KGT +    PL +
Sbjct: 759 ALVIKSEVKKGTTVSFTLPLAE 780



 Score = 45.4 bits (106), Expect = 0.035,   Method: Composition-based stats.
 Identities = 27/249 (10%), Positives = 55/249 (22%), Gaps = 10/249 (4%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIG--MRLCDVSDILHIDPNNHIGDLLKRQNT 142
           F W++   G     S  L + +G      I     + D++    ID       LL+   T
Sbjct: 277 FDWDLSR-GR-MFWSSSLYELLGREPKDDILSFADVADITHPDDIDLLGLAEHLLESGET 334

Query: 143 WYGKT-TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
              +T  +   +G+  ++ +           R      G  I  +               
Sbjct: 335 LVDETFRMRHADGS--WIWLRARGEIQSEPGRAEPHLIGICI-DITEQHELAEQSRMADL 391

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
           +    +  I +           +    +      + N V      Y          +   
Sbjct: 392 RLRDAIETISEAFVLWNARNELVICNSNYQSLHSLPNSVIKPGTPYKDVMAAASNAEVAP 451

Query: 262 LTSEESSLPEQEDF--HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
                       D        +    +      ++    S                D  +
Sbjct: 452 HPVTLRQRGGAPDGSYEAQLEDGRWLQISERRTKDGGFVSVGTDITALKKHEEKLVDSEK 511

Query: 320 NLTPETVDK 328
            L     D 
Sbjct: 512 RLKATVTDL 520


>gi|256828945|ref|YP_003157673.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256578121|gb|ACU89257.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 1143

 Score =  342 bits (878), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 119/752 (15%), Positives = 237/752 (31%), Gaps = 68/752 (9%)

Query: 97  EISEELPKTIGNYAFKMIGMR--LCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEG 154
             S +    +G    +    +    D        P       L  +  +        +  
Sbjct: 273 YCSPQALDVLGYSPGETDKAKGFWTDRIHPEDA-PVYTEAMKLASRTGFLDVEYRV-LSE 330

Query: 155 TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH------ 208
           T       L    + +      G    G+              K L++K   L       
Sbjct: 331 TGKETW--LHDKAVMTDKGA--GLVMHGVATDITEQKREIETRKALERKSRQLDTMLRLI 386

Query: 209 -EIKKGHSSVEKEKYDIFSQQSP-----PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
            +        +  +                       +     ++A ++     +     
Sbjct: 387 CDNVPDMIWAKDMQKKYIFANKAVCETLLIARDTDEPIGRTDLFFAQRERARHPDNPDWH 446

Query: 263 TSEESSLPEQ------------EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH-- 308
           +  E                  +++  +             L + S  +   +       
Sbjct: 447 SFGEICRDTDQITIDAGCPQQFDEYGNVGGKFLFLDVRKAPLFDESGVNIGTVGSARDVT 506

Query: 309 --PSLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAG 364
               +    + G       +D  P    V       + + N S    +            
Sbjct: 507 GQRRMEKKLEAGNVALRAILDSIPADICVVDVATDEILFMNASMRENSVES--------- 557

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
           G        +      + P    + +         + + +    ++           +  
Sbjct: 558 GTGFHHPRQQSDGGEPLCPGKALQGN--------EMASWEALDHSTGKWNLHFDRPVSWL 609

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
                +  I  +    +  +R ME  V +   +L+     I  +  E    + N A +  
Sbjct: 610 DGRPARIRIAMDITARKHAERLMEKAVDEQRILLDYIQTQIWYLIDEQTYGAVNEAHAAF 669

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
            G  + D+  +        +   V       + S       E+     + E++ LS+   
Sbjct: 670 NGLGIGDMAYRDIYEIYPVDVADVCRQGNEVVFSSGRPVRTEEWLPHFSGEKRFLSILKS 729

Query: 545 IKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
            K            +  DI+E  + +  L  AK+ AE+ S  KS FLA +SHEIRTP+  
Sbjct: 730 PKLRADGTVEYVVCSGEDITERWKSEEALKKAKEQAEEASRVKSGFLASMSHEIRTPING 789

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           I+G  ++++        N     + +   RS + ++ +++D++D S+IE+GK+ +   P+
Sbjct: 790 IMGMLQLLQTADL----NADQASFVDMAVRSCDRLVRLLSDIMDFSRIEAGKLTIQSAPM 845

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPS 721
           SL+   S    L    +    +++  +    +P  IL D   ++QI  N++ NA  FT S
Sbjct: 846 SLESVFSHVRELFTPLSGSNGVVLDFTLDPALPDRILGDAFRLQQILNNLVDNACKFTTS 905

Query: 722 GGQIIIS----TTHTSNE-EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
           G +I +     T        V   V DTG+G+ + +L +   PF Q+ +      +G GL
Sbjct: 906 G-RITVQAWNLTAVEPRTVRVFFEVSDTGIGIPDEDLRRLFDPFIQLCDGYVRSHKGVGL 964

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           GL + K +V+   G   + S   KGT      
Sbjct: 965 GLSICKRLVELMGGGMSVTSEAGKGTTFAFSL 996


>gi|269926146|ref|YP_003322769.1| histidine kinase [Thermobaculum terrenum ATCC BAA-798]
 gi|269789806|gb|ACZ41947.1| histidine kinase [Thermobaculum terrenum ATCC BAA-798]
          Length = 617

 Score =  342 bits (878), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 108/368 (29%), Positives = 188/368 (51%), Gaps = 32/368 (8%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
           + ++E E   L  I  A+SD I +   +  ++  N A  KL G      L +      + 
Sbjct: 279 RIELETEKKNL--IFNASSDAILVF-SDNRLIQVNPAGKKLLGIDQ---LGEHLQDLDKI 332

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                    + EIL+LD    +   T    +E ++  L     + P  +   +TM D++E
Sbjct: 333 CDVG-----IDEILNLDSPSIIRIETSIGIRELEVRKLE---PENPNDNQKIITMRDVTE 384

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            +              +    KS+F++ VSHE+RTPL +++GF+ VI +   GPL + R 
Sbjct: 385 QR--------------ELDRAKSNFISMVSHELRTPLNSVLGFANVILSGATGPLSD-RQ 429

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS-EAISLVQLYANEK 682
            E+  YI  S   ++ +V+D+LD+S++++G   LH   V L E ++ + +S +   A E+
Sbjct: 430 REFLEYIQASSRHLVQLVSDILDLSRMDAGTFTLHKSKV-LPEIIAKQVVSQLSGLAAEQ 488

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
            I +       IP+I AD R V+Q+ +N++ NAI FTP GG++I+       + V+  V 
Sbjct: 489 NIELAFLSDKKIPKIEADGRRVEQVLINLVGNAIKFTPPGGKVIVRVR-NQGDHVLFSVS 547

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG G++  ++++  + F Q   + Q   +GTGLGL +AK++V+ + GK ++ STP +G 
Sbjct: 548 DTGPGISEEDMDRIFERFYQPIMNPQAATKGTGLGLAIAKSLVEQHGGKIWVDSTPGQGA 607

Query: 803 LIEIIFPL 810
                 P+
Sbjct: 608 TFYFTLPI 615


>gi|209965866|ref|YP_002298781.1| sensory box histidine kinase [Rhodospirillum centenum SW]
 gi|209959332|gb|ACI99968.1| sensory box histidine kinase [Rhodospirillum centenum SW]
          Length = 1057

 Score =  342 bits (877), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 127/765 (16%), Positives = 241/765 (31%), Gaps = 63/765 (8%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMI-GMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           DA   +   ++         A  +  G+    V   L       I    ++   W     
Sbjct: 160 DAEDRVMLFNQRFLDFFPELAPYVRPGITFEAVMRNLMASGTLPIPP--EKAEAWLTDRL 217

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRG-FGIVHVNRVDNDPRALGKRLDKKFSHL 207
                         L    I       +G  G   +V             + L       
Sbjct: 218 HRH-RNPGPPFETALGKDRIIRVAEHRTGAGGHVSLVVDVTALRTSERRLRDLIDGSLQG 276

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
             I +G   V                  +    S           + +     LL    S
Sbjct: 277 IVIHRG-FDVLYANQSFAGIFGFDTAEALLEGGSLDFIIPPENKGLARRSLDRLLREGGS 335

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE--YLSHRNHPSLSAYFDEGENLTPET 325
               +      +  +   +    ++      + +   +               E    + 
Sbjct: 336 FQRSRVAALRRDGTRIWIEVAVRSVDWLDGPALQSIVMDVTERARAEDALAASEARFRDL 395

Query: 326 VDKCPIPF--FVYSHGNL---FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
           V   P     +    G +    Y +P    +      D +       +LL       +  
Sbjct: 396 VSTVPGLVYQWYERTGGVHGYSYVSPRSREMYGIAPEDLVRD----WSLLPIHPEDQDRW 451

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
            + +       T  +   R         +      +        P+ +  NGI  +  + 
Sbjct: 452 RRTIADAVLRETDWSFEGRFI---LPDGSVRWWRAVSRPVRVG-PDEVRFNGIVIDIEEQ 507

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIIL-STNRAVSKLFGYPVEDILRK--PF 497
           +  + +++     L         G  + +R        +  ++ + G  VE+ L     F
Sbjct: 508 KRAEAELQSREAMLRYSASLAGLGYWVWDRRLAWTTYCSPELAAIRGVTVEEYLETLGSF 567

Query: 498 TVFLEQNTPSVMNHYLTEILS-LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--- 553
              L    P   ++Y T  L     R+T          + +   +R +   +        
Sbjct: 568 EQQLRWIQPEDRDYYRTHALDVARSRRTYVVEYRILRPDGQTRYVREVGGPVYDDRGELV 627

Query: 554 -YSLTMHDISEWKQEKNKLSHAKKIAEK---------------------ESSHKSDFLAR 591
            Y   + DI++ KQ + +L  A+   E+                      S  KS FLA 
Sbjct: 628 KYVGALQDITDRKQRELELEEARDRLERQASEMTALALELQTARDAAEAASRAKSRFLAV 687

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           +SHE+RTP+T +IG  +++     G         Y   +  S + +L ++ND+LD SKIE
Sbjct: 688 MSHELRTPMTGVIGMIDLLL----GTTVTSDQRRYLETLHSSADALLVVLNDILDFSKIE 743

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN-----IP-RILADLRSVK 705
           +G++ +   PV L   + + I L    A++K + +R           +P  +  D   ++
Sbjct: 744 AGQLVIEAIPVRLQALLDDVIDLFAPAASQKGVELRVRQPERRQKNRLPKELTGDPTRLR 803

Query: 706 QIALNILSNAIHFTPSGG-QIIISTTHTSNEE--VILRVRDTGVGMTNYELEKAMKPFGQ 762
           Q+ +N++ NA+ FTP+G  ++             +   V DTG+G+    +    + F Q
Sbjct: 804 QVLMNLVGNAVKFTPAGSIELRAEAQREDGGTWLLRFEVEDTGIGIPPDVVPMLFESFTQ 863

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
              S   R  GTGLGL + K +V    G+  + S P +G++    
Sbjct: 864 ADASTTRRFGGTGLGLAICKRLVTMMGGEIGVRSEPRRGSVFWFT 908



 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 35/389 (8%), Positives = 97/389 (24%), Gaps = 28/389 (7%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNH-IGDLLKRQNTWYG 145
                     +S    +  G     ++      +       D     I D + R+  W  
Sbjct: 409 RTGGVHGYSYVSPRSREMYGIAPEDLV-RDWSLLPIHPEDQDRWRRTIADAVLRETDWSF 467

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +      +G+ +     ++  P+     E    R  GIV          A  +  +    
Sbjct: 468 EGRFILPDGS-VRWWRAVS-RPVRVGPDEV---RFNGIVIDIEEQKRAEAELQSREAMLR 522

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHL-------RMKNKVSSLTEYYA---HKDDVLK 255
           +   +      V   +    +  SP                + S  +       +D    
Sbjct: 523 YSASLAGLGYWVWDRRLAWTTYCSPELAAIRGVTVEEYLETLGSFEQQLRWIQPEDRDYY 582

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
                 +     +   +      +      ++  G + ++  E  +Y+      +     
Sbjct: 583 RTHALDVARSRRTYVVEYRILRPDGQTRYVREVGGPVYDDRGELVKYVGALQDITDRKQR 642

Query: 316 DEGENLTPETVDKCPIPF------FVYSHGNLFYANPS---FLLLTKYKSVDDIEIAGGL 366
           +       + +++              +      A+ +   FL +  ++    +    G+
Sbjct: 643 ELELEEARDRLERQASEMTALALELQTARDAAEAASRAKSRFLAVMSHELRTPMTGVIGM 702

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
             LL    ++ +       L+ S    +     +          L +  IP        +
Sbjct: 703 IDLLLGTTVTSDQRRYLETLHSSADALLVVLNDILDFSKIEAGQLVIEAIPVRLQALLDD 762

Query: 427 NM-PQNGIEPEDVDTRINKRKMEIEVMQL 454
            +        +       ++    +  +L
Sbjct: 763 VIDLFAPAASQKGVELRVRQPERRQKNRL 791



 Score = 38.1 bits (87), Expect = 6.3,   Method: Composition-based stats.
 Identities = 18/135 (13%), Positives = 44/135 (32%), Gaps = 14/135 (10%)

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF---------GYPVEDILRKPF 497
            +     L   LE   DG+ + + E  ++  N+     F         G   E ++R   
Sbjct: 138 AQEAATHLIDGLERLKDGLILYDAEDRVMLFNQRFLDFFPELAPYVRPGITFEAVMRNLM 197

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT 557
                   P     +LT+ L           T     +++++ +    +    +  +   
Sbjct: 198 ASGTLPIPPEKAEAWLTDRLHRHRNPGPPFETAL--GKDRIIRV---AEHRTGAGGHVSL 252

Query: 558 MHDISEWKQEKNKLS 572
           + D++  +  + +L 
Sbjct: 253 VVDVTALRTSERRLR 267


>gi|113969135|ref|YP_732928.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-4]
 gi|113883819|gb|ABI37871.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-4]
          Length = 1118

 Score =  342 bits (877), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 104/517 (20%), Positives = 206/517 (39%), Gaps = 23/517 (4%)

Query: 311 LSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
           LS      E+     ++        +   G +   N +   +  +   + +         
Sbjct: 270 LSLLAKSNEDRMRAMMNTAVDGIITIDGQGIIVNVNKAVTTILGWSPAELLGENV---KK 326

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
           +    +  ++         +    I  + R    Q    +S+ +                
Sbjct: 327 IVPESIRPHHDGYLARYINTREAQIIGTGREVEAQHKAGHSVPVRLSIGHVMQGKAH--Y 384

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII--NREGI-ILSTNRAVSKLFG 486
             G   +       +++++    +  S++     GIA    + EG  ++  + AV  + G
Sbjct: 385 FVGFLSDLSLRNEMEQELKNNEAKFRSLITNIP-GIAYRCKSTEGWPMVFISEAVLNITG 443

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
           YP ED        F            +  I +     T          + ++  L     
Sbjct: 444 YPAEDFELPHPKRFFSDLYYP---DDIESIYAQAQPPTFSMEYRIIRADGEVRWLFEHGN 500

Query: 547 KLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
            +   +         + DI+E K  +  L  AK  AE+ ++ ++ FLA +SHEIRTP+ A
Sbjct: 501 YILDETSNEVWIDGFLMDITERKVMEQDLVTAKNNAEQAAAARAAFLANMSHEIRTPMNA 560

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           IIGFS+++              +  + I+RS   ++ ++ND+LD +K++ GK+ L     
Sbjct: 561 IIGFSDILLESVLDT----EQHKQLSTINRSAKSLMHLLNDVLDSAKLDKGKLELENRVF 616

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPS 721
            L + +   IS + L A ++R+ +    A ++    +     ++Q+ +N++ NA+ FT  
Sbjct: 617 CLTDEIDTVISTLWLQAKKQRLSLEVDIAPSMAANFIGSPERIRQVLINLIGNAVKFTCE 676

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           G ++ +S    ++  V   + DTG+GMT  +L +  + F Q   S   +  GTGLG  ++
Sbjct: 677 G-KVTVSVFPQNDNLVTFEIIDTGIGMTPEQLNRVFEAFAQADASMSRKYGGTGLGTTIS 735

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
           K +V+   G+    ST  +G+      PL  +S P +
Sbjct: 736 KQLVELMGGQLEAESTLGQGSTFRFTIPLQSSSEPLE 772



 Score = 45.4 bits (106), Expect = 0.042,   Method: Composition-based stats.
 Identities = 22/243 (9%), Positives = 69/243 (28%), Gaps = 20/243 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP--NNHIGDLLKRQNTWY-- 144
           ID  G +  +++ +   +G    +++G  +  +     I P  + ++   +  +      
Sbjct: 295 IDGQGIIVNVNKAVTTILGWSPAELLGENVKKIV-PESIRPHHDGYLARYINTREAQIIG 353

Query: 145 --GKTTLWPIEGTNLYVPIDLA-ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
              +       G +  VP+ L+    +  +   F GF     +    + N+     K  +
Sbjct: 354 TGREVEAQHKAGHS--VPVRLSIGHVMQGKAHYFVGF-----LSDLSLRNEMEQELKNNE 406

Query: 202 KKFSHLHEIKK--GHSSVEKEKYDIFSQQSPPPHLR-MKNKVSSLTEYYAHKDDVLKTEK 258
            KF  L        +     E + +        ++     +   L        D+   + 
Sbjct: 407 AKFRSLITNIPGIAYRCKSTEGWPMVFISEAVLNITGYPAEDFELPHPKRFFSDLYYPDD 466

Query: 259 YPL--LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
                  ++  +   +      +       ++   + + +             +     +
Sbjct: 467 IESIYAQAQPPTFSMEYRIIRADGEVRWLFEHGNYILDETSNEVWIDGFLMDITERKVME 526

Query: 317 EGE 319
           +  
Sbjct: 527 QDL 529


>gi|253577301|ref|ZP_04854619.1| PAS sensor protein [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843305|gb|EES71335.1| PAS sensor protein [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 586

 Score =  342 bits (877), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 93/486 (19%), Positives = 184/486 (37%), Gaps = 31/486 (6%)

Query: 334 FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393
            +Y    +        +       D  E        L    L        V    +    
Sbjct: 123 MLYVAQRVTAGEFDGYIRLSMSLADVEEGLAQAWMWLFGALLVLFLIAGLVSYRVAAGLT 182

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
                                     + ++  +         + +  ++ +  +      
Sbjct: 183 KPLEQITRVAHRISRFDYDARVK-LARKDEIGQLGMAINGMADSLQQQLKR--IRDNEDL 239

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
           + S+L   + GI +++    I   NR   ++     E +L KP+                
Sbjct: 240 MQSVLANMTGGILMVDATEHIALINRKAERILHTKGELVLGKPYQELKRNYEFVKFME-- 297

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKL 571
                +  ++ +++       EEK+L    +               + D++E ++ +   
Sbjct: 298 ---EGIARKEAVQEERNVYDPEEKILHFDGVPMFEDNGNYRGMLFLVQDVTEIRKLE--- 351

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
                        +S+F+A VSHE++TP+ A+ GF+E +     G         +   I 
Sbjct: 352 -----------RMRSEFVANVSHELKTPIAAVKGFAETLL--AGGVKDEETTRSFLQIIY 398

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
             G+ +  ++ DLL++SKIES ++ L + PV L E       ++   A +K I +     
Sbjct: 399 DEGDRLNRLIGDLLELSKIESKRVPLEYAPVQLSELFDSLYEVLLPAAEKKSISMSHDVP 458

Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT----SNEEVILRVRDTGVG 747
            ++  I AD   ++QI +N+LSNAI ++  GG++ +S +        E+V + V DTG+G
Sbjct: 459 EHL-FIEADEDRLRQIFMNLLSNAISYSLEGGKVRVSASIIGEGGDEEKVRILVSDTGIG 517

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           +   +L +  + F ++  ++     GTGLGL + K +VD + G   + S   +GT   + 
Sbjct: 518 IPKKDLPRIFERFYRVDKARSRSSGGTGLGLSIVKHLVDLHRGTIRVESKVGEGTTFILE 577

Query: 808 FPLYDT 813
            PL  +
Sbjct: 578 LPLMHS 583


>gi|150392115|ref|YP_001322164.1| PAS/PAC sensor signal transduction histidine kinase [Alkaliphilus
           metalliredigens QYMF]
 gi|149951977|gb|ABR50505.1| PAS/PAC sensor signal transduction histidine kinase [Alkaliphilus
           metalliredigens QYMF]
          Length = 784

 Score =  342 bits (877), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 120/746 (16%), Positives = 252/746 (33%), Gaps = 50/746 (6%)

Query: 92  HG-YLKEISEELPKTIGN-YAFKMIGMRLCDVSDILHIDPNNHIGDL--LKRQNTWYGKT 147
            G  +   ++   +        ++IG ++  +     +D +  I     L RQ      +
Sbjct: 29  EGDRIIRCNDAAVEMFELLSKDQLIGKKVYGLFPKRQLDGSLSIKKAKELVRQAEENEVS 88

Query: 148 T----LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                     GT  YV I +  +PI  +            +         R L K  +  
Sbjct: 89  KFEWTHSRRCGTLFYVEIVMVVIPINGKK------VINVSLRDITEKIKARILLKTNEDI 142

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY--PL 261
           +  + E    +  +           +P                      +    +    +
Sbjct: 143 YQDMFEKNHANMLLADGDTGEIVDANPAACAFYGYDKEQFITMNVTDLSIGSHHEVFNRI 202

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS---LSAYFDEG 318
              + +          +   +    + +    N +     Y    +            E 
Sbjct: 203 EDVKCNKGKHYYFKDQLASGEIKDVEAYSGSINKNGRELVYSIIHDVTEKNKALEALKES 262

Query: 319 ENLTPETVDKCPIPFFVYSH------GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
           E       +      F+         G     N +      Y   + +E          +
Sbjct: 263 EKKFKTLFNNANDLIFLNHAEDPSSSGQFIEVNEAACKRLGYTREELLEKTP-------S 315

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
               D    +     +       A+     I         +         +  E   +  
Sbjct: 316 HITVDKAEGELAGYRKEIYKNGCATFETTLISKRG---YEIPVEVNLHTFKLFETQVELS 372

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV-ED 491
           I  +  + +  +  +     +   +++   + + II++E IIL +N   +K  G+    D
Sbjct: 373 IVRDITERKQIEVSLIKSKEKYRKLMDFLPESVLIIDKE-IILFSNATATKFLGFDTFND 431

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS--LRIIIKKLP 549
           ++ +P   F+       M  ++ +I      + L        K+  +    +        
Sbjct: 432 MINRPLLDFIYWEDYDDMVEWINKIQRNKNSKPL-VEIRFIKKDGSIAYGNIVETKVSFN 490

Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                 + + DI+E K+ K  L    +   K    K++F   ++HE+RTPL  I G  ++
Sbjct: 491 DQESTMMIIRDITEQKEAKKLL----EETIKYDKLKTEFFVNIAHELRTPLNVIFGALQL 546

Query: 610 I-KNQRFGPLGNPRYI----EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           +  + +   +     +    +    + ++   +L +VN+++DI+KIESG   L  + V +
Sbjct: 547 LELDFKQDEIEKKEALLGVDKRIKSMKQNCYRLLRLVNNIIDITKIESGYYQLELQNVDI 606

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724
              V      V  Y   + I ++         I  D   +++I LN+L+NAI FT SGGQ
Sbjct: 607 VNVVENITMSVSEYMEIRGINLQFDTQVESKLIACDPDKMERIMLNLLANAIKFTESGGQ 666

Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
           I ++  +   E +++ ++DTG+G+    +    + F Q+  S     EG+G+GL L K++
Sbjct: 667 IKVNM-YEKEENMMISIQDTGIGIPEDRINVIFERFSQVDRSLTRSHEGSGIGLSLVKSL 725

Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPL 810
           V+   G+  + S   +G+   I  P+
Sbjct: 726 VELQGGQITVKSKIGQGSEFIIALPI 751



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/279 (9%), Positives = 74/279 (26%), Gaps = 10/279 (3%)

Query: 314 YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
              E +       +K P    +     +   N + + + +  S D +             
Sbjct: 6   LVKEQDLDYKILFEKSPDASLIIEGDRIIRCNDAAVEMFELLSKDQLIGKKVYGLFPKRQ 65

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
                +  K   L R       +       +           +     N        N  
Sbjct: 66  LDGSLSIKKAKELVRQAEENEVSKFEWTHSRRCGTLFYVEIVMVVIPINGKKV---INVS 122

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDI 492
             +  +    +  ++        + E     + + + + G I+  N A    +GY  E  
Sbjct: 123 LRDITEKIKARILLKTNEDIYQDMFEKNHANMLLADGDTGEIVDANPAACAFYGYDKEQF 182

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
           +    T      +    +     I  +   +             ++  +      +  + 
Sbjct: 183 ITMNVTDL----SIGSHHEVFNRIEDVKCNKGKHYYFKDQLASGEIKDVEAYSGSINKNG 238

Query: 553 CYSL--TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
              +   +HD++E  +    L  ++K  +   ++ +D +
Sbjct: 239 RELVYSIIHDVTEKNKALEALKESEKKFKTLFNNANDLI 277


>gi|312144338|ref|YP_003995784.1| multi-sensor signal transduction histidine kinase [Halanaerobium
           sp. 'sapolanicus']
 gi|311904989|gb|ADQ15430.1| multi-sensor signal transduction histidine kinase [Halanaerobium
           sp. 'sapolanicus']
          Length = 592

 Score =  342 bits (877), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 92/520 (17%), Positives = 208/520 (40%), Gaps = 29/520 (5%)

Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLL 351
           L ++     +  +H N   + A     E               +Y    +   N    ++
Sbjct: 95  LADSHYNIEDMDNHINRQEIEAAIRTQEAADSIRYSSTIDEDMLYLAQAIIINNEVMGVI 154

Query: 352 TKYKSVDDIEIAGGLS-TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
              +S++ I               +  +  +  +    +           +T +   +  
Sbjct: 155 RTARSLEFINNILIEDIKNYLFFFIILSFFMFFLTWQLTSNIVKPLEKITNTAEKIAQGD 214

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470
           L+      +  ++  +          +++ +I   ++  E  ++ +IL++  DG+   + 
Sbjct: 215 LSQRISIRKYNSEIEKLAMMFNHMAAELEDKIA--EISKEKNRIEAILKSMVDGVIATDS 272

Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530
           EG +   N A  K+F    + I  K     L  +   +         SLD ++++ +  +
Sbjct: 273 EGRVSLINPAAQKIFNIDEQAIKGKNLISSLFNHRLDMYLQ-----RSLDEKESISREII 327

Query: 531 GSTKEEKLLSLRIII--KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
               ++K++    I         +   + + DI+E ++ +                ++DF
Sbjct: 328 YQNPDKKIIQTTFIPLLGDNKDINGGVIVLTDITELRKLETV--------------RNDF 373

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
           +A VSHE+RTPLT+I+G+ + +              ++   I    N +  ++ DLL++S
Sbjct: 374 VANVSHELRTPLTSILGYLDTLLESDIEDQKTKE--KFLKIIKEETNRLSLLITDLLNLS 431

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIA 708
           KIES    L+  P    +   +   L++  A  K I I     +++P++      V+Q+ 
Sbjct: 432 KIESQSFELY--PGDFLKTFQKVYHLLEKNAQLKDININLEIEDDLPQVYMVREQVEQVL 489

Query: 709 LNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
           +N++ NAI ++ SGG I IS    S+ ++   ++D G+G+   E E+  + F ++  ++ 
Sbjct: 490 INLIDNAIKYSSSGGTINISVQKKSD-KLYFEIQDNGIGIPVDEQERIFERFYRVDKARS 548

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
               GTG+GL + + ++  +  +  + S   +G+      
Sbjct: 549 RELGGTGIGLSIVRNIIKQHGSEIKVESRVGEGSKFSFYL 588


>gi|310659855|ref|YP_003937576.1| sensory box histidine kinase yycg [Clostridium sticklandii DSM 519]
 gi|308826633|emb|CBH22671.1| sensory box histidine kinase yycg [Clostridium sticklandii]
          Length = 602

 Score =  342 bits (877), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 70/370 (18%), Positives = 168/370 (45%), Gaps = 23/370 (6%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           ++  E  +L +I++   DG+  I+ +G I+  N +   +     +D+  K +   ++  +
Sbjct: 250 EISSEKSKLNAIIKHMEDGLVAIDGKGQIIHYNPSFLSMLNLREKDLTDKSYDKIIDDYS 309

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISE 563
             +    + +    +  + +         ++++L     + +          +   DI+E
Sbjct: 310 KDLEYGAILQKSISNSSENIIFE----NNKKRILKASPALFRDEAGRISGAIVVFQDITE 365

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            ++ ++               + +F+A VSHE++TP+T I  +SE +             
Sbjct: 366 SQRLED--------------MRREFVANVSHELKTPITTIKSYSETLLCGAL--EDKELS 409

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
             +   I+   + +  +V DLL +S ++  K+      + L E V++++  ++++   K 
Sbjct: 410 KNFVEVIENEADRMSSLVKDLLQLSHMDYEKVVWEMHHLDLREIVTDSVRKLEVHFQNKN 469

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
             +    ++    I AD   ++Q+ +N+L+NAI +TP  G I IS        +  +++D
Sbjct: 470 QKLNMKISDEAVPIYADRGKIQQVIINLLTNAIKYTPENGNIRISAQVVDKNAI-FQIQD 528

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           +G+G+   ++++  + F ++   +     GTGLGL +A  ++  + G   + S   KG++
Sbjct: 529 SGIGIPKEDIKRIFERFYRVDKGRSRAQGGTGLGLSIAHNIIKQHKGSIKVSSELEKGSI 588

Query: 804 IEIIFPLYDT 813
             + FP+ ++
Sbjct: 589 FTVYFPVDNS 598


>gi|15888325|ref|NP_354006.1| two component sensor kinase [Agrobacterium tumefaciens str. C58]
 gi|15155995|gb|AAK86791.1| two component sensor kinase [Agrobacterium tumefaciens str. C58]
          Length = 778

 Score =  342 bits (877), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 116/544 (21%), Positives = 222/544 (40%), Gaps = 51/544 (9%)

Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDI 360
           Y+  +        F E        + +     + +       + + S   +         
Sbjct: 240 YMQVKRARDADDIFAESNLRVETALSRGRCGLWDFDLSSRRMFWSGSLYEILGLPPKAAP 299

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
                 + ++ +   +     + V        C          +        +      +
Sbjct: 300 LSFSDAARMMHSEDGNLYELARAV-------GCGNLRQIDQIFRMRHSKGHYVWLRARAQ 352

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
             +        GI  +  +     ++      +L   +E+TS+   + ++   ++  N  
Sbjct: 353 VIRTNNGPRVIGIAMDVTEQHRLAQRYAEADQRLADAIESTSEAFVLWDKNDRLVMCNIH 412

Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
             K +G P   ++       +     +     +   ++   +  L + T     +++ L 
Sbjct: 413 YQKAYGLPDSVLVAGTEKSTVY---AAAARPVVERRVADPDQSGLSRTTEVQLADDRWLQ 469

Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH--------------------------- 573
           +     +            DI+  K+ + +L                             
Sbjct: 470 INERRTR---DGGLVSVGTDITLLKRHQERLRDSERRLMATIGDLSASQHKLERQKTELS 526

Query: 574 --------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
                    K+ A+  +  KS+FLA +SHE+RTPL AI+GFSE+++N+ FGP+G+P+Y E
Sbjct: 527 DANANYLAEKERAQAANRAKSEFLANMSHELRTPLNAILGFSEILQNEMFGPVGSPKYSE 586

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           YA  I  SG  +L+++ND+LD+SKIE+G M ++ E + L   + E + L  + A +K I 
Sbjct: 587 YARDIHDSGKHLLNVINDILDMSKIEAGHMRINRETIDLAPLIEETLRLTAIQAEQKNIT 646

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           ++      +  +  D R++KQI LNILSNA+ FT  GG+I + T       + L + DTG
Sbjct: 647 VQQKVCAGL-TMQGDRRAMKQIMLNILSNAVKFTGDGGRIALRTHVHEAAMI-LTIADTG 704

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+    L+K  +PF Q+ +       G+GLGL +++++V  + G   I S   +GT++ 
Sbjct: 705 IGIPAQALQKIGQPFEQVQSQYAKSQGGSGLGLAISRSLVKLHGGTMKIRSCEGRGTVVT 764

Query: 806 IIFP 809
           II P
Sbjct: 765 IIIP 768


>gi|256829214|ref|YP_003157942.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256578390|gb|ACU89526.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 676

 Score =  342 bits (877), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 107/509 (21%), Positives = 195/509 (38%), Gaps = 22/509 (4%)

Query: 313 AYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
              +E  N     ++    P  +      +  A+ +F         + I      S L D
Sbjct: 37  LLTEEALNYAQSILETIREPLLILDKDMKVISASRNFYNTFSVNPDETIG-----SVLYD 91

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
                 +      +L                  ++      M     +      ++    
Sbjct: 92  LGNKQWDIPKLRELLETIIPRETNFGNYEVEHVFDSIGRRVMLLNARQIQRTSDKDPIIL 151

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVE 490
               +  + +  +  +     +   + E  +DGI ++  REG I   N A  K+FGY V+
Sbjct: 152 LAIEDITERKRLEDLLADSEERYRRLFETANDGIVLLEKREGTITHANPAFEKMFGYNVK 211

Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
           +IL K           S     + ++    +    +       K    L +   I  +  
Sbjct: 212 EILGKHLEDIGIFLENSDFQIIMQKLRDTGVINYDDVSI----KTNFNLDIDTDIYLVDR 267

Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
           +S     + D+++ K     L  A K AE  +  KS+FLA +SHEIRTPL  I+G  +++
Sbjct: 268 ASLVQCNIRDMTQNKINLKSLIRATKQAEIANIAKSEFLANMSHEIRTPLNGIMGMIQLL 327

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
                G        +Y      S N +  +++D+LD+S+IE+G M +H       +  + 
Sbjct: 328 DGTPVGA----DQNKYIELALTSCNRLTRLLSDILDLSRIEAGMMEIHESKFRFADLRNS 383

Query: 671 AISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
            + L  + +  K + ++      I P ++ D   V QI  N++ N + FT  G  + +  
Sbjct: 384 ILGLFAVESLTKAVTLKCIIDPTIHPEVIGDEGRVLQILFNLVGNGLKFTKEGS-VTVEI 442

Query: 730 -----THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
                   ++  V+  V DTG+G+    L+   KPF QI  S   + +G GLGL + K +
Sbjct: 443 TPLGSEKNNDYRVLFTVSDTGIGIHEDHLKNLFKPFVQIEKSYTRKYQGAGLGLSIVKKL 502

Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
           V    G   + S   +GT + ++ P   +
Sbjct: 503 VHLMGGSIEVDSVVGEGTSMNVVLPFKQS 531



 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 59/147 (40%), Gaps = 4/147 (2%)

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
            +++ +    E  +    SILE   + + I++++  ++S +R     F    ++ +    
Sbjct: 30  TESKSDVLLTEEALNYAQSILETIREPLLILDKDMKVISASRNFYNTFSVNPDETIGSVL 89

Query: 498 TVF-LEQNTPSVMNHYLTEILSLDLR-QTLEKITLGSTKEEKLLSLRII-IKKLPFSSCY 554
                +Q     +   L  I+  +      E   +  +   +++ L    I++       
Sbjct: 90  YDLGNKQWDIPKLRELLETIIPRETNFGNYEVEHVFDSIGRRVMLLNARQIQRTSDKDPI 149

Query: 555 SLT-MHDISEWKQEKNKLSHAKKIAEK 580
            L  + DI+E K+ ++ L+ +++   +
Sbjct: 150 ILLAIEDITERKRLEDLLADSEERYRR 176



 Score = 40.8 bits (94), Expect = 0.89,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 16/48 (33%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK 138
             G +   +    K  G    +++G  L D+   L       I   L+
Sbjct: 191 REGTITHANPAFEKMFGYNVKEILGKHLEDIGIFLENSDFQIIMQKLR 238


>gi|229543965|ref|ZP_04433024.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           coagulans 36D1]
 gi|229325104|gb|EEN90780.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           coagulans 36D1]
          Length = 589

 Score =  342 bits (877), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 87/394 (22%), Positives = 163/394 (41%), Gaps = 29/394 (7%)

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
           +P    ++  E              + N   ++ E  QL +IL + +DG+   NR+G IL
Sbjct: 222 VPILTRDEIGELATAFNTMGR--QLKFNMDALKQEKEQLRNILSSMADGVLTFNRDGAIL 279

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
             N            +   K      +   P  ++  L +++  +  QT E    G    
Sbjct: 280 IMNPPAEMFLQNWYHNQAAK------DAPLPEGLSALLAKVVETEKEQTDEIEINGRY-- 331

Query: 536 EKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
              + +   +  L         + D++E ++                  + DF+A VSHE
Sbjct: 332 --YVMIASPLYNLSRIRGVVTIIRDMTEERKL--------------DKLRDDFIANVSHE 375

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           +RTP+  + G+SE I +            E+A  I      +  +VN+LLD++++E+G  
Sbjct: 376 LRTPVAMLQGYSEAIIDDI--AASEEEKKEFAKIIYDETLRIGRLVNELLDLARMEAGHF 433

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715
           +   EPVS +  +          A EK I +    +++   +  D   ++Q+  N++ NA
Sbjct: 434 SFRMEPVSFNSFIERVTHKFNGIAKEKGIDLVCETSDSDLTLEIDADRIEQVLTNLIDNA 493

Query: 716 IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           +  T S G + +     +   V + V D G G+ + +L    + F +   ++     GTG
Sbjct: 494 LRHTSSNGYVKVK-EEEAPGGVYVHVEDNGSGIPDEDLPFVFERFYKADKARTRGKSGTG 552

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           LGL +AK +V+ + G+ ++ S   +GT      P
Sbjct: 553 LGLAIAKNIVEGHGGRIFVKSKLGEGTTFSFFLP 586


>gi|117926678|ref|YP_867295.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117610434|gb|ABK45889.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 957

 Score =  342 bits (877), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 109/655 (16%), Positives = 221/655 (33%), Gaps = 41/655 (6%)

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL------RMKN 238
                      + +   +       +    S       +          L          
Sbjct: 178 QELAARQRAENMIRESQQALVKAQLVAHMGSWSSDVAIEHMEWSQGLCQLLGVKVDEAPL 237

Query: 239 KVSSLTEYYAHKDDV-LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297
            V  L           +      L   +++ +  +   H               ++  + 
Sbjct: 238 PVERLLGLVPQPQQQSVLEMLDRLSQQQQNQVQMEHRIHRETGGVLQVLHRCERVEGANG 297

Query: 298 ESFE--YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY------SHGNLFYANPSFL 349
              +   +      +L       E       D       +Y          +   N +  
Sbjct: 298 PRVQGILIDTSQSEALRGALAASEEKFRNLFDNMGSGVAIYEAIDNGDDFIIRGFNKAST 357

Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
           + TK      +     ++ +   P +     +                   ++ Q     
Sbjct: 358 VFTKLDRESILGKR--VTEIF--PGIRAMGLLDLFKRVWHSGVPEHLPLTQYSDQR---- 409

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469
                    E      EN     +  +    R  ++++    ++   + E   D   I +
Sbjct: 410 ----ITQWVENYVYRLENGEVVAVFDDVTSNRQAQQELAQSELRFREMAETLEDVFWITS 465

Query: 470 REG-IILSTNRAVSKLFGYPVEDILRKP--FTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
             G  IL  N A  K++GY V+ + +    ++  +     + +   L +  S       E
Sbjct: 466 AHGHRILYVNPAFEKVWGYSVQALEQDINLWSQSIHPEDRARVEEALLQSTSHADGFDQE 525

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM---HDISEWKQEKNKLSHAKKIAEKESS 583
              +    + +L  +      +         +    DI+  K+ +  L  A + A++ S 
Sbjct: 526 YRIV-RGDDGQLRWIHNRGYPIEEQGQVVRVVGLATDITAKKENEAALQQAMRQAQQASQ 584

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
            KS+FLA +SHEIRTP+  +IG +E++         +     Y   +  SG  +LD++N 
Sbjct: 585 AKSEFLAAMSHEIRTPMNTVIGMTELLLETPL----SEEQQRYVRSLRSSGTALLDVINA 640

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLR 702
           +LD+++IESG++ L  E   L E + E   ++   A +K++ +      N P  ++ D  
Sbjct: 641 ILDLTRIESGRLELTEERYDLHELMRETCEVMGYAAAKKKLEMVLEMNPNTPNYLVGDAP 700

Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFG 761
            ++QI +N++ NAI FT  G Q+ +        E + + V D+G+G+    +      F 
Sbjct: 701 RLRQILINLVGNAIKFTEVG-QVCVRVWLDEAVERLRIEVEDSGIGIPKEHINTIFDMFA 759

Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           Q  +S   R  G+GLGL +++ +     G+  + S   KG+   +  P      P
Sbjct: 760 QADSSMARRFGGSGLGLTISQRLAQLMGGRLAVQSQVQKGSCFTLSMPCQIGEEP 814



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 46/372 (12%), Positives = 101/372 (27%), Gaps = 25/372 (6%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK 146
           W+ D      E S+ L + +G    +        V  +L + P      +L+  +    +
Sbjct: 209 WSSDVAIEHMEWSQGLCQLLGVKVDEA----PLPVERLLGLVPQPQQQSVLEMLDRLSQQ 264

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF---GIVHVNRVDNDPRALGKRLDKK 203
                     ++       L +  R     G  G    GI+         R      ++K
Sbjct: 265 QQNQVQMEHRIHRE-TGGVLQVLHRCERVEGANGPRVQGILIDTSQSEALRGALAASEEK 323

Query: 204 FSHLHEIKKGHSSV-------EKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256
           F +L +      ++       +      F++ S       +  +                
Sbjct: 324 FRNLFDNMGSGVAIYEAIDNGDDFIIRGFNKASTVFTKLDRESILGKRVTEIFPGIRAMG 383

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQY--TKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
                     S +PE       +  +     + Y   L+N    +       N  +    
Sbjct: 384 LLDLFKRVWHSGVPEHLPLTQYSDQRITQWVENYVYRLENGEVVAVFDDVTSNRQAQQEL 443

Query: 315 FDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                    E  +     F++ S     + Y NP+F  +  Y SV  +E       L   
Sbjct: 444 AQSELR-FREMAETLEDVFWITSAHGHRILYVNPAFEKVWGY-SVQALEQDI---NLWSQ 498

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
               ++ A     L +S             ++ +      +    +    +  + +   G
Sbjct: 499 SIHPEDRARVEEALLQSTSHADGFDQEYRIVRGDDGQLRWIHNRGYPIE-EQGQVVRVVG 557

Query: 433 IEPEDVDTRINK 444
           +  +    + N+
Sbjct: 558 LATDITAKKENE 569



 Score = 40.0 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/203 (8%), Positives = 42/203 (20%), Gaps = 12/203 (5%)

Query: 87  WNIDAHG-YLKEISEELPKTIGNYAFKM--IGMRLCDVSDILHIDPNNHIGDLLKRQNTW 143
           W   AHG  +  ++    K  G     +                     + + L +  + 
Sbjct: 462 WITSAHGHRILYVNPAFEKVWGYSVQALEQDINLWSQSIHPED---RARVEEALLQSTSH 518

Query: 144 Y---GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
                +              I     PI     +    R  G+        +  A  ++ 
Sbjct: 519 ADGFDQEYRIVRGDDGQLRWIHNRGYPI-EEQGQVV--RVVGLATDITAKKENEAALQQA 575

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
            ++     + K    +    +              +     S  +    +          
Sbjct: 576 MRQAQQASQAKSEFLAAMSHEIRTPMNTVIGMTELLLETPLSEEQQRYVRSLRSSGTALL 635

Query: 261 LLTSEESSLPEQEDFHTINLNQY 283
            + +    L   E        + 
Sbjct: 636 DVINAILDLTRIESGRLELTEER 658


>gi|329851989|ref|ZP_08266670.1| mmoS [Asticcacaulis biprosthecum C19]
 gi|328839838|gb|EGF89411.1| mmoS [Asticcacaulis biprosthecum C19]
          Length = 1042

 Score =  342 bits (877), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 122/655 (18%), Positives = 224/655 (34%), Gaps = 37/655 (5%)

Query: 172 NREFSGFRGFGIVHVNRVDNDPRALG------KRLDKKFSHLHEIKKGHSSVEKEKYDIF 225
                G    G+V   R+      L       +  + +F  +            E   + 
Sbjct: 259 AGTMLGLIILGVVSARRMSESENRLESERLRAQASEAQFHSVIANAHQAIVTTDEHGRVA 318

Query: 226 SQQ---SPPPHLRMKNKVSS--LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINL 280
           S                V           +     T+          +    +      L
Sbjct: 319 SWNGQAEAVFGWSETEVVGRRMSDMIIPERFRDAHTKGMARFMETGEARVIGQRIELPAL 378

Query: 281 NQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHG 339
           N+   +       + ++ S  +        ++    + + L        PI    V   G
Sbjct: 379 NRSGTEFTIELALSAARNSAGWQFTAMMHDVTERLAQTQ-LFEAAFHHAPIGVALVGLDG 437

Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399
                N +F  L   +  D +         +  P   D +      L R D        R
Sbjct: 438 GFLKVNLAFCRLVDLEREDLLAADFQK---ITHPDDLDRDLELLAELTRGDIPSYQMDKR 494

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459
                      + +         +               +    +        +   + E
Sbjct: 495 ---YLRPNGEVVWVNLSVSMVREETGAPKHYIAQVQNLTERMEAEA-------RYQLMAE 544

Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL 519
            T+D I   +        + AV +L G    + L      ++ +   + +          
Sbjct: 545 NTTDLIVTCDLNLRRSFVSAAVRRLQGISPAEALACRPEDYMHEEDVASVVATFRRTAEG 604

Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAK 575
           +    +               +      +         +   + DIS    ++ KL  A 
Sbjct: 605 ETGLRVRWRCWNQEA-HIWTWVESSPSLIRNGDDTAPMFVDVVRDISSQVTQEQKLEAAT 663

Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
             AE  ++ K+DF+A +SHEIRTPLT +IGFS ++  ++  P      + YA  I  + N
Sbjct: 664 DAAEAAAAAKADFMANMSHEIRTPLTVMIGFSSLLTERQDMP---DDALRYAQRIATASN 720

Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695
            +L +VND+LD SK+E+G++ L  +P  + E   E   ++Q  A  K + +R    N++P
Sbjct: 721 SLLSLVNDILDFSKLEAGQLELKPKPTEIVEMSRELFLMMQAQAAAKGLNLRFEDDNSVP 780

Query: 696 R-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELE 754
             +  D ++ +Q+ LN++ NAI FT +G  + +   +  N+ + +RV DTG GM      
Sbjct: 781 DTVFLDPQAYRQVLLNLVGNAIKFTDTGS-VTLMLGY-DNKHLTVRVIDTGPGMNEAGQA 838

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           K  + F Q+  S   +  GTGLGL + + +V+A  G   + S P +G+      P
Sbjct: 839 KLFQRFSQVDGSSTRKHGGTGLGLAICRGLVEAMGGTIGVTSAPGEGSHFHFTLP 893



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/408 (9%), Positives = 97/408 (23%), Gaps = 28/408 (6%)

Query: 50  EQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNY 109
                ++      S      +        I    +     D HG +   + +     G  
Sbjct: 272 SARRMSESENRLESERLRAQASEAQFHSVIANAHQAIVTTDEHGRVASWNGQAEAVFGWS 331

Query: 110 AFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNT-WYGKTTLWP---IEGTNLYVPIDL 163
             +++G R+ D+             +   ++       G+    P     GT   + + L
Sbjct: 332 ETEVVGRRMSDMIIPERFRDAHTKGMARFMETGEARVIGQRIELPALNRSGTEFTIELAL 391

Query: 164 AALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL---DKKFSHLHEIKKGHSSVEKE 220
           +A       R  +G++   ++H          L +           L  +  G   V   
Sbjct: 392 SAA------RNSAGWQFTAMMHDVTERLAQTQLFEAAFHHAPIGVALVGLDGGFLKVNLA 445

Query: 221 KYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINL 280
              +   +          K+      +    D        L   +  S    + +   N 
Sbjct: 446 FCRLVDLEREDLLAADFQKI-----THPDDLDRDLELLAELTRGDIPSYQMDKRYLRPNG 500

Query: 281 NQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN 340
                      ++  +     Y++   + +     +    L  E  +   +      +  
Sbjct: 501 EVVWVNLSVSMVREETGAPKHYIAQVQNLTERMEAEARYQLMAE--NTTDLIVTCDLNLR 558

Query: 341 LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400
             + + +   L      + +          +     ++ A       R+         R 
Sbjct: 559 RSFVSAAVRRLQGISPAEALACRP------EDYMHEEDVASVVATFRRTAEGETGLRVRW 612

Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
                       +   P    N          +  +       ++K+E
Sbjct: 613 RCWNQEAHIWTWVESSPSLIRNGDDTAPMFVDVVRDISSQVTQEQKLE 660


>gi|78060129|ref|YP_366704.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. 383]
 gi|77964679|gb|ABB06060.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. 383]
          Length = 781

 Score =  342 bits (877), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 102/561 (18%), Positives = 194/561 (34%), Gaps = 33/561 (5%)

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS---LSAYFDEGENLTP 323
           +        ++  L +   +     L      +   +      +                
Sbjct: 84  TLFLSDPAAYSEPLPERLVRLGTFVLVGALVCAVAAMLRHARLTNDAALRREAAARRRLE 143

Query: 324 ETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
             +   P         G L Y N +   L      D    A     L    +        
Sbjct: 144 AVLQALPHGVIATDTNGRLTYLNAAAAALVGCPPGDATGRA-VRDVLRVVDRDGRRVQST 202

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
           P+ L           +  H +Q      + +  +     +          +  +    R 
Sbjct: 203 PLDLAL---GGAGVVSDRHWLQVEGGEPVPIVEVAAPLGDADGNVDGAVLLLRDAGADRS 259

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
                 ++     ++++A+ D I  I+ +G I+S N A  ++FGY       + F   + 
Sbjct: 260 RADASRLQ----RAVVDASPDAIVGIDTDGRIVSWNPAAQRMFGYDDAHARGRTFESLVA 315

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM---- 558
                +    LTE              L   ++ +     +    +   +   + +    
Sbjct: 316 M--RWLKRKPLTESFDDMHEAVGPIDLLCVRRDGRRFRATVSAGPVRSDARACVALSLTL 373

Query: 559 --------HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
                    D+   +        A+  A   +  K + LA VSHE+RTPL  I G+ EV+
Sbjct: 374 RESGAQRRRDLRAQRSL-RGARVARDQAATSNRLKDELLATVSHELRTPLNVIYGWVEVL 432

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
           +N     L      +  + IDRS   +  +V D+LD S + +GK+ L   PV +    S+
Sbjct: 433 RNSGDSAL----QQQAIDAIDRSARSLTRMVGDILDASSLATGKLQLDAMPVDVVRLFSD 488

Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
           ++   Q  A+   I++    A +   +  D   ++Q+  N++SNA+ FTP+GG + +   
Sbjct: 489 SVGAFQTAASSAGIVLEFDCAASTCVVSGDAERLRQMLSNLVSNALKFTPAGGSVTVGLA 548

Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
              +  V+L V DTG G+    L      F +  +S      G GLGL + + + + + G
Sbjct: 549 -RDDVRVVLTVSDTGQGIVPAFLPYVFDMFRRADDSPASSRRGLGLGLSIVRHIAELHGG 607

Query: 791 KFYIFST-PAKGTLIEIIFPL 810
              + S    +G    +  P+
Sbjct: 608 SVTVKSAGRNRGATFTVTLPV 628



 Score = 67.7 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 30/263 (11%), Positives = 60/263 (22%), Gaps = 25/263 (9%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH----IGDLLKRQNTWY 144
            D +G L  ++      +G       G  + DV  ++  D        +   L       
Sbjct: 156 TDTNGRLTYLNAAAAALVGCPPGDATGRAVRDVLRVVDRDGRRVQSTPLDLALGGAGVVS 215

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGF----RGFGIVHVNRVDNDPRALGKRL 200
                W        VPI   A P+   +    G     R  G        +  +      
Sbjct: 216 D--RHWLQVEGGEPVPIVEVAAPLGDADGNVDGAVLLLRDAGADRSRADASRLQRAVVDA 273

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK---------- 250
                   +      S       +F         R    + ++                 
Sbjct: 274 SPDAIVGIDTDGRIVSWNPAAQRMFGYDDAHARGRTFESLVAMRWLKRKPLTESFDDMHE 333

Query: 251 -----DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
                D +          +  S+ P + D         T ++     + + +        
Sbjct: 334 AVGPIDLLCVRRDGRRFRATVSAGPVRSDARACVALSLTLRESGAQRRRDLRAQRSLRGA 393

Query: 306 RNHPSLSAYFDEGENLTPETVDK 328
           R     +A  +  ++    TV  
Sbjct: 394 RVARDQAATSNRLKDELLATVSH 416



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 25/249 (10%), Positives = 61/249 (24%), Gaps = 22/249 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G +   +    +  G       G     +  +  +     + +     +   G   
Sbjct: 281 IDTDGRIVSWNPAAQRMFGYDDAHARGRTFESLVAMRWL-KRKPLTESFDDMHEAVGPID 339

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           L  +          ++A P+ S  R         +    R     R    R  +      
Sbjct: 340 LLCVRRDGRRFRATVSAGPVRSDARA-----CVALSLTLRESGAQRRRDLRAQRSLRGAR 394

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
             +                       R+K+++ +   +       +      +L +   S
Sbjct: 395 VARDQ----------------AATSNRLKDELLATVSHELRTPLNVIYGWVEVLRNSGDS 438

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
             +Q+    I+ +  +  +  G + + S  +   L     P              +T   
Sbjct: 439 ALQQQAIDAIDRSARSLTRMVGDILDASSLATGKLQLDAMPVDVVRLFSDSVGAFQTAAS 498

Query: 329 CPIPFFVYS 337
                  + 
Sbjct: 499 SAGIVLEFD 507


>gi|310818443|ref|YP_003950801.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309391515|gb|ADO68974.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 661

 Score =  342 bits (877), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 94/513 (18%), Positives = 190/513 (37%), Gaps = 34/513 (6%)

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEI 362
           +        A   E E      ++  P   +   + G L Y N  +   T  ++ +    
Sbjct: 152 ALLRQKEREALERESELRYRRLLNALPEAMWAAGADGKLNYVNQVWREYTGLEAEEPSLE 211

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
                      +       + V                 T +W+   +         + +
Sbjct: 212 VFLKVVHPADREHMRREWTEAVRQVSRMEREFRMRRHDGTWRWHLGRA-------VPERD 264

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAV 481
                +    +  +  D +  +  +E    +  + L+AT D + +   E   +   N   
Sbjct: 265 GTGRLVGFIAVATDIDDKKRAEATLE----RFKATLDATLDCVLMFEPEHLTLTYANVGA 320

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
           +K  G   E ++        +          L  + S +        T    ++   + +
Sbjct: 321 TKQLGLEREQLVGTRMLEVEDAFDEEAFRKILAPLQSGEQPS-HTYSTTHRRRDGTEIPV 379

Query: 542 RIIIKKLPFSSC---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
            ++++ +        +     DI+E K+ +  L          S  K  FLA  SHE+RT
Sbjct: 380 EVVLQYVAAGGGPGRFVSVARDITERKRAEEAL-------LLASEAKDAFLAAASHELRT 432

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
           PL A  G +  +   + G  G     +    I+R  + +  +V DLLDIS++++G+++L 
Sbjct: 433 PLAAAKGHA-HLALLKLGGEGETGTGKSLKIINRQIDRMTKLVEDLLDISRLQAGRLSLD 491

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718
            E   L   + E    + + +      +R      +  +  D   + Q+  N+LSNAI +
Sbjct: 492 LERFDLGTLIRETCDRMGVLSQLHP--LRVELQEQLEGLW-DRGRLDQVLTNLLSNAIRY 548

Query: 719 TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
           +P GG++++       E V L V+D GVG+   +     + FG+   S   +  G GLGL
Sbjct: 549 SPEGGEVLVKAA-ADGEGVQLSVKDCGVGIPPEKQGLIFERFGRAHGS---KYGGLGLGL 604

Query: 779 PLAKAMVDANMGKFYIFST--PAKGTLIEIIFP 809
            +++ +V+ + G+ ++ S      G+   +  P
Sbjct: 605 TISQGIVEQHGGRIWVDSQGCAGDGSTFHVWLP 637



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 28/245 (11%), Positives = 58/245 (23%), Gaps = 6/245 (2%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQNTWY 144
            W   A G L  +++   +  G  A +        V      +       + +++ +   
Sbjct: 181 MWAAGADGKLNYVNQVWREYTGLEAEEPSLEVFLKVVHPADREHMRREWTEAVRQVSRME 240

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            +  +   +GT  +      A+P         GF    +           A  +R     
Sbjct: 241 REFRMRRHDGT--WRWHLGRAVPERDGTGRLVGF--IAVATDIDDKKRAEATLERFKATL 296

Query: 205 SHLHE-IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
               + +           Y            R +   + + E     D+    +    L 
Sbjct: 297 DATLDCVLMFEPEHLTLTYANVGATKQLGLEREQLVGTRMLEVEDAFDEEAFRKILAPLQ 356

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
           S E         H          +              ++S     +     +E   L  
Sbjct: 357 SGEQPSHTYSTTHRRRDGTEIPVEVVLQYVAAGGGPGRFVSVARDITERKRAEEALLLAS 416

Query: 324 ETVDK 328
           E  D 
Sbjct: 417 EAKDA 421



 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 61/238 (25%), Gaps = 14/238 (5%)

Query: 94  YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK--TTLWP 151
            L   +    K +G    +++G R+ +V D    +    I   L+          TT   
Sbjct: 312 TLTYANVGATKQLGLEREQLVGTRMLEVEDAFDEEAFRKILAPLQSGEQPSHTYSTTHRR 371

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
            +GT + V + L  +        F       +                         E K
Sbjct: 372 RDGTEIPVEVVLQYVAAGGGPGRF-----VSVARDITERKRAEEALL-------LASEAK 419

Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271
               +    +       +         K+    E    K   +   +   +T     L +
Sbjct: 420 DAFLAAASHELRTPLAAAKGHAHLALLKLGGEGETGTGKSLKIINRQIDRMTKLVEDLLD 479

Query: 272 QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
                   L+   ++   GTL   + +    LS  +   +              +D+ 
Sbjct: 480 ISRLQAGRLSLDLERFDLGTLIRETCDRMGVLSQLHPLRVELQEQLEGLWDRGRLDQV 537


>gi|149276653|ref|ZP_01882796.1| two-component hybrid sensor and regulator [Pedobacter sp. BAL39]
 gi|149232322|gb|EDM37698.1| two-component hybrid sensor and regulator [Pedobacter sp. BAL39]
          Length = 828

 Score =  342 bits (877), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 98/484 (20%), Positives = 193/484 (39%), Gaps = 23/484 (4%)

Query: 342 FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA-RL 400
            +A        +Y     +    G  + +     S    +    L +      +     +
Sbjct: 62  IFAVDDLEENQQYIDPQLLLPFSG--STIPQYYASAPETLTDKRLLKLIPGTTSLLVLPI 119

Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
             +       +          +     +       E +    +   +E   ++  +IL+ 
Sbjct: 120 QELDIQGYILIGWHMSFTFSESFQKFVLHGLDKIRETIHLGQHYYALEELKVRFNAILQT 179

Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM--NHYLTE--- 515
              GI  I+  G     N   + + G    ++     +  ++Q                 
Sbjct: 180 VEQGIVFIDDSGKNSWINEPAAAILGISGGNVPPAELSAAMQQLRSRADNKEEIFRRGME 239

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW-------KQEK 568
           I +   ++      + ST E  +L++          S    T  DI++        K+  
Sbjct: 240 IFTSADKRVKNWQWIFSTPETYVLNVCCTPTISEHISGMLWTFDDITQQYLYDEHLKELN 299

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
            +L    +IA++++  KS+FLA +SHEIRTP+  +IG + +++N R     +    ++  
Sbjct: 300 VQLEEKSRIADEQNKAKSEFLANMSHEIRTPMNGVIGMTSLLRNTRL----DEDQFDFVE 355

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I  S + +L+I+N++LD SKIESGK+ L   P  L + V E   L+   A EK + +  
Sbjct: 356 SIRISADALLEIINEILDFSKIESGKLELEEHPFVLSKIVEETYDLLSFKAQEKDLDLLY 415

Query: 689 SFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EVILRVRDT 744
               ++P  ++ D+  ++QI +N++ NAI FT  G  +             E+   V+D+
Sbjct: 416 IIDPDVPYEVIGDMTRLRQIIVNLVGNAIKFTDEGEILTSIKLLEKKGSTYELEFSVQDS 475

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G+   ++ K    F Q+ +S   +  GTGLGL ++  ++    G+ ++ S    GT  
Sbjct: 476 GIGIPQDKMHKLFNSFSQVDSSTTRKYGGTGLGLVISARLIQKMNGRIWVESEVNVGTTF 535

Query: 805 EIIF 808
           +   
Sbjct: 536 KFTI 539


>gi|255523233|ref|ZP_05390204.1| PAS/PAC sensor hybrid histidine kinase [Clostridium carboxidivorans
           P7]
 gi|296186196|ref|ZP_06854601.1| PAS domain S-box domain-containing protein [Clostridium
           carboxidivorans P7]
 gi|255513101|gb|EET89370.1| PAS/PAC sensor hybrid histidine kinase [Clostridium carboxidivorans
           P7]
 gi|296049464|gb|EFG88893.1| PAS domain S-box domain-containing protein [Clostridium
           carboxidivorans P7]
          Length = 779

 Score =  342 bits (877), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 93/499 (18%), Positives = 185/499 (37%), Gaps = 30/499 (6%)

Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
             V   G + + N +   +T + S +           L      +     P+        
Sbjct: 26  IAVDMDGKIVFLNSAAEGITGWSSKEAKNENFNTVFPLINISTGEKVKS-PIDNVIKLGK 84

Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
            +  +     I  +      ++       +          +  +    R  + ++  +  
Sbjct: 85  SVGLTKNSGLITKDNRKKY-ISANSSPIKDDLGNFTGIVVVFRDITRIRSIELELINKEH 143

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--------- 503
              ++  +   G+ I++   I+ + N  V K        I+ K                 
Sbjct: 144 GFKALFNSVPVGVVILDENEIVYAVNNCVLKFLNIKKTQIIGKAVGNGFCCKNSFDDERG 203

Query: 504 ---------NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554
                     +      +  +       +    + + + + E  L L I           
Sbjct: 204 CGYGENCKSCSLRKAITFAEKFNVSTNMEFNNVVVIENKEIEVWLKLSITPVYFGEKRVI 263

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
              + DI + K ++ +L  AK+ AE  S  KS+FLA +SHEIRTPL  ++G  ++     
Sbjct: 264 VAVLMDIKDRKNKEIELRKAKEEAEAASKAKSEFLANMSHEIRTPLNGLVGMVDLTLLTD 323

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                N    E         N +L ++ND+LD SK+E+GK+ +      +   + E I  
Sbjct: 324 L----NCEQKENLMTAKSCTNSLLKVINDILDFSKLEAGKLVIENINFDIKNLIEEIIKA 379

Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTT--- 730
               A  K+I +  +F++ IP+ +L D   ++Q+  N+++NAI FT  G +I +      
Sbjct: 380 NSSTALAKQIELNYTFSSTIPQFLLGDPNRLRQVLNNLINNAIKFTEHG-EISLKVKNIE 438

Query: 731 -HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
               + ++   + DTG+G++   +    + F Q+  S      GTGLGL ++K + +   
Sbjct: 439 TIDEHVKLEFSITDTGIGISEENINTIFESFSQVDGSSTRTVGGTGLGLAISKQLTEIMG 498

Query: 790 GKFYIFSTPAKGTLIEIIF 808
           G   + S   +G+    + 
Sbjct: 499 GNLLVKSKLGQGSSFYFVL 517



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 49/130 (37%), Gaps = 7/130 (5%)

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE---QNTPSVMN 510
           L + L   +DG+  ++ +G I+  N A   + G+  ++   + F         +T   + 
Sbjct: 14  LINALSCMADGVIAVDMDGKIVFLNSAAEGITGWSSKEAKNENFNTVFPLINISTGEKVK 73

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQ 566
             +  ++ L     L K +   TK+ +   +      +       +   +   DI+  + 
Sbjct: 74  SPIDNVIKLGKSVGLTKNSGLITKDNRKKYISANSSPIKDDLGNFTGIVVVFRDITRIRS 133

Query: 567 EKNKLSHAKK 576
            + +L + + 
Sbjct: 134 IELELINKEH 143


>gi|94971085|ref|YP_593133.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Koribacter
           versatilis Ellin345]
 gi|94553135|gb|ABF43059.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Koribacter
           versatilis Ellin345]
          Length = 1326

 Score =  342 bits (877), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 120/687 (17%), Positives = 225/687 (32%), Gaps = 52/687 (7%)

Query: 166 LPIYSRNREFSGFRGFGIVHVNRVDNDPRA--LGKRLDKKFSHLHEIKKGHSSVEKEKYD 223
            P+   N      +   ++          A    + L    S   + +    +VE     
Sbjct: 129 RPVRDSNIAGDHVKALALMRDKTGPRLLVARDALESLIALQSKALDEESAALTVETNHTI 188

Query: 224 IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQ- 282
           +         +      S +       D +L      L  +E     + E     N    
Sbjct: 189 LIVWAFMGLGIVATFGFSLVVIQREVVDVILSFRDRVLDVAENRLDQKIEGLALPNEIGE 248

Query: 283 --YTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN 340
                       +    + +               +  E      + +      +     
Sbjct: 249 MSRALHSLQTAAKERETQRWLKSEVATTIESLQKSESHEAFARTLLSRISESVGIVYGAA 308

Query: 341 LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK------------PVMLYR 388
             Y            +    + +GG +       L+     +             + +  
Sbjct: 309 --YFLDRARQRYVRSATFAFDGSGGSNEFAAGEGLAGQAVAEKRALQIHLSEQNELSIPA 366

Query: 389 SDRTCIAASARLHTIQWNRENSLA---------------MTFIPFEKANQFPENMPQNGI 433
                  A      I  + E                   +            E +  N  
Sbjct: 367 GIGVVRPAQLWFVPITTSDEVIGVVELASAGTLTAEQIELLHALLPAIALNLEILNANLA 426

Query: 434 EPEDVDTRINKR-KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
             + ++    +  ++     +   IL +  +GIA ++ +G I   N A + + GY    I
Sbjct: 427 TRKLLERTQQQAIEIAETEEKSRLILGSVDEGIAGMDAKGYITFINPAGADMLGYDQAGI 486

Query: 493 LRKPFTVFLEQNTPS-----VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
           +       +             +  +           ++   L   K+            
Sbjct: 487 VGAHLHSTIHYAHSDGSPYSRDDCPMYRTAITGEACAVDDEVLWR-KDGGAFPAEYAATP 545

Query: 548 LPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
           +          +   DI+E K+ + +L  A++ AE  +  KSDFLA +SHEIRTP+ AII
Sbjct: 546 VLKDGRAVGTVVAFRDITERKKNEAELRRAREAAEDATRTKSDFLANMSHEIRTPMNAII 605

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           G S +       P    +  +Y N I  S + +L ++ND+LD SKIE+GK+N+     SL
Sbjct: 606 GMSHLALKTNLSP----QQRDYLNKIQISSHHLLGVINDILDFSKIEAGKLNVESIDFSL 661

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG 723
           ++ +    +L+   A+ K + +    + ++P  ++ D   + QI  N  SNA+ FT  G 
Sbjct: 662 EKVLETLANLIGEKASAKGLELIFDISPDVPHNLIGDPLRLGQILTNYASNAVKFTEHGE 721

Query: 724 QII---ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
            +I   +         +   VRDTG+G+T  +  +  + F Q   S   +  GTGLGL +
Sbjct: 722 IVIGAKVQERTDDEVLLYFAVRDTGLGLTAEQKARLFQSFQQADTSTTRKHGGTGLGLAI 781

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEII 807
           +K +     G+  + S P KG+     
Sbjct: 782 SKQLSALMHGEVGVESEPGKGSTFWFT 808



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 36/147 (24%), Gaps = 12/147 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD-------ILHIDPNNHIGDLLKRQN 141
           +DA GY+  I+      +G     ++G  L                D        +  + 
Sbjct: 462 MDAKGYITFINPAGADMLGYDQAGIVGAHLHSTIHYAHSDGSPYSRDDCPMYRTAITGEA 521

Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
                  LW  +G     P + AA P+    R       F             A  +R  
Sbjct: 522 CAVDDEVLWRKDGGAF--PAEYAATPVLKDGRAVGTVVAF---RDITERKKNEAELRRAR 576

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQ 228
           +        K    +    +       
Sbjct: 577 EAAEDATRTKSDFLANMSHEIRTPMNA 603


>gi|144898582|emb|CAM75446.1| Signal transduction histidine kinase [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 822

 Score =  342 bits (877), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 127/651 (19%), Positives = 247/651 (37%), Gaps = 45/651 (6%)

Query: 171 RNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP 230
           R    +G      V  +++      L +  D        +                  +P
Sbjct: 69  RQDNLAGAARIAQVIDSKMQQVQPGLNQSADVSDRDYARVLAQLEEGG------LFPGTP 122

Query: 231 PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG 290
                       L+   A+  D  +     +L+ +E   P ++     +           
Sbjct: 123 IISSLTGAPQWPLSLRRANPADSTQVGLVRMLSVDEVQRPLEQARVKPDG---------- 172

Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLL 350
                      ++   +   ++      + +      + P          L  A    + 
Sbjct: 173 ---------MAWIIRDDGTIITVAPWRADQIGQNVAGQLPAKVLRGGAERLVAATFDGVD 223

Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
                +        GL   +       +  I            +       ++       
Sbjct: 224 YLVTSAP-----VQGLPLRVAVAGPMSDYFIDWWREAGMQGLLMLV-MTATSLYSGHRQW 277

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470
             +  +    A+   E   Q+ +   ++  R    K+      L + LE +   + I + 
Sbjct: 278 TLLGQLDDANASLQQEVRSQSAVLNAEIRERQEHEKL---ARVLRNALEYSGSMVLITDA 334

Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530
            G++   N A  K  GY ++DI+ K  ++              + IL+      +     
Sbjct: 335 HGLMEYVNPAFVKATGYDLDDIIGKRPSMLRHPELSPAATGLWSTILACRSWTGM---FC 391

Query: 531 GSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
              K+   L +   I  +   S     +     D +  +  + +L  AK++AE  S  KS
Sbjct: 392 NQRKDGTPLWVSATISPVTDDSGVITHFVAVEEDATSRRDGEEELREAKRMAEAASLAKS 451

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
           +FL+ +SHE+RTP+ AI+GF++++ N     LG  R   YA+ I +SGN +L +VND+LD
Sbjct: 452 EFLSSMSHELRTPMNAILGFAQLLTNADNDSLG-ERQRFYADSILKSGNHLLSLVNDILD 510

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN-NIPRILADLRSVK 705
           +++IE+G+++L FE V  D+ ++E I ++   A  +++ +    +    P + AD   +K
Sbjct: 511 MARIEAGRLSLSFERVEPDQVMAEIIPMIAATAERRKVTLIDEISGRGAPAVEADFTRLK 570

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           Q  +N+ SNA+ +  +GG +  S +H     V + V DTG+G+      +  +PF ++  
Sbjct: 571 QALINLASNAVKYNRTGGTVRFSISHGETGPVRIAVSDTGIGIPEKRRTEVFQPFARL-G 629

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           ++    EGTG+GL + K +V+A  G+   F+    GT   +  P    S P
Sbjct: 630 AEASTVEGTGIGLTITKMLVEAMGGQIGFFTQENLGTTFWLEIPRA-ASQP 679



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 43/373 (11%), Positives = 96/373 (25%), Gaps = 28/373 (7%)

Query: 50  EQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVR--------FTWNIDAHGYLKEISEE 101
           + +    Q   S S     +       + + R +R             DAHG ++ ++  
Sbjct: 285 DANASLQQEVRSQSAVLNAEIRERQEHEKLARVLRNALEYSGSMVLITDAHGLMEYVNPA 344

Query: 102 LPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPI 161
             K  G     +IG R   +           +   +    +W G       +GT L+V  
Sbjct: 345 FVKATGYDLDDIIGKRPSMLRHPELSPAATGLWSTILACRSWTGMFCNQRKDGTPLWVSA 404

Query: 162 DLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEK 221
            ++  P+   +   + F    +        D     +   +        K    S    +
Sbjct: 405 TIS--PVTDDSGVITHF--VAVEEDATSRRDGEEELREAKRMAEAASLAKSEFLSSMSHE 460

Query: 222 YDIFSQQSPPPH--LRMKNKVSSLTEYYAHKDDVLKTEKYPLLT-------SEESSLPEQ 272
                         L   +  S       + D +LK+  + L         +   +    
Sbjct: 461 LRTPMNAILGFAQLLTNADNDSLGERQRFYADSILKSGNHLLSLVNDILDMARIEAGRLS 520

Query: 273 EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP 332
             F  +  +Q   +          +     +   +     A   +   L    ++     
Sbjct: 521 LSFERVEPDQVMAEIIPMIAATAERRKVTLIDEISGRGAPAVEADFTRLKQALINLASNA 580

Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
                 G     + S    T    +   +   G+      P+       +P     ++ +
Sbjct: 581 VKYNRTGGTVRFSISHGE-TGPVRIAVSDTGIGI------PEKRRTEVFQPFARLGAEAS 633

Query: 393 CIAASARLHTIQW 405
            +  +    TI  
Sbjct: 634 TVEGTGIGLTITK 646


>gi|20090591|ref|NP_616666.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
 gi|19915625|gb|AAM05146.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
          Length = 742

 Score =  342 bits (877), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 105/410 (25%), Positives = 189/410 (46%), Gaps = 15/410 (3%)

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
              +  +          I     +  + +++++++  +   +L++ ++ +  +N +  I+
Sbjct: 334 RRLDLKDNDELYRLAKEINGMLNEIELAEQELKVQEREKKVLLDSLNEMVIFVNPQLNIV 393

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
             N+A  +     +E             + P V +  L EI S   +++ E     +T++
Sbjct: 394 WANKAALEYMHMDLEKAKGIHLKAIPSMSGPLVEHLPLEEIFSSGNKESGEF----TTED 449

Query: 536 EKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
               S++                T  DI+  K  +  L   K+IAE  +  KS+FLA +S
Sbjct: 450 GNSWSIQATPVTDDDGKIIGVLETFRDITGKKAVEK-LIQEKQIAEIANRTKSEFLANIS 508

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HE+RTPL +IIGFS+++  Q FG L N + + YA  I +SG  +L ++ND+LD+SK+E+G
Sbjct: 509 HELRTPLNSIIGFSDLLCEQIFGEL-NEKQLRYAGNISKSGKHLLSLINDILDLSKVEAG 567

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713
           KM L +    L   ++   +L+   A+ K I I     + +  + AD     QI  N++ 
Sbjct: 568 KMELDYTEFELAGKLNTIKNLLAPIADRKSIQIEIEVDSRLTNLYADEAKFAQIMYNLVD 627

Query: 714 NAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
           NAI F      + +       ++V + V D G G+   +  K  KPF Q+      + +G
Sbjct: 628 NAIKFASENSPVNVGARMK-GDKVEITVTDIGAGIKPEDQHKLFKPFSQVDYFASKQHQG 686

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL------YDTSHPH 817
           TGLGL L K +V  + G  +  S P +G+      P+       + + PH
Sbjct: 687 TGLGLYLVKQIVQMHRGYVWFRSVPGEGSTFAFAIPINGKKSDGNDTAPH 736


>gi|148380483|ref|YP_001255024.1| putative phosphate regulon sensor protein [Clostridium botulinum A
           str. ATCC 3502]
 gi|153933173|ref|YP_001384707.1| putative phosphate regulon sensor protein [Clostridium botulinum A
           str. ATCC 19397]
 gi|153936407|ref|YP_001388228.1| putative phosphate regulon sensor protein [Clostridium botulinum A
           str. Hall]
 gi|148289967|emb|CAL84080.1| two-component sensor kinase [Clostridium botulinum A str. ATCC
           3502]
 gi|152929217|gb|ABS34717.1| sensor histidine kinase [Clostridium botulinum A str. ATCC 19397]
 gi|152932321|gb|ABS37820.1| sensor histidine kinase [Clostridium botulinum A str. Hall]
          Length = 569

 Score =  342 bits (876), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 88/392 (22%), Positives = 171/392 (43%), Gaps = 33/392 (8%)

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
            ++            + ++  +   ++  +  +L +IL++   G+  I++E  ++  N  
Sbjct: 208 EDEIGRLGRTFNAMADILENSLV--EVRDKQNRLEAILKSMDSGVVAIDKEFKVIMINPY 265

Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
            +KLFG   + I         +     V+         + +    ++     T +     
Sbjct: 266 ANKLFGIKRDIIGENLMDNIRDFELEKVLRDKEPGYKEIGILWPEKRTLRVKTTD----- 320

Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
               I     +      + DI++ K+ +              + +  F+A VSHE++TPL
Sbjct: 321 ----IISKYDNIGTVAVVQDITDIKKLE--------------NMREQFVANVSHELKTPL 362

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           T+I GFSE +K      + + +  E +   I+   + +  ++ND+L +S IE  K  L  
Sbjct: 363 TSIKGFSETLKY-----VDDKKNREKFLQIINDEADRLTRLINDILVLSNIEKQKQELIK 417

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719
           E + L+E + +   LV+  A +K I I       +P ++ +     Q+ +N++ NAI +T
Sbjct: 418 EKIDLNELIEKVYCLVKKSAEDKNIKINI-VGEKVPLLIGNKDKYNQMIINLVDNAIKYT 476

Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
              G + I T       ++  V DTGVG++   L++  + F ++  ++     GTGLGL 
Sbjct: 477 EPNGYVSIGTR-QDKGNIVFWVEDTGVGISEEHLDRIFERFYRVDKARSRVEGGTGLGLA 535

Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
           + K +V +  GK  + S P KGT   +  PL 
Sbjct: 536 IVKHIVLSINGKIEVKSEPKKGTKFIVKIPLS 567


>gi|217037915|gb|ACJ76429.1| hybrid sensor kinase RscS [Aliivibrio fischeri]
          Length = 943

 Score =  342 bits (876), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 99/382 (25%), Positives = 180/382 (47%), Gaps = 15/382 (3%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +    + E E  +L  + E   + I I++++  +   N++ S L G  +EDI  K     
Sbjct: 264 KRELIRSEKEKTKLALVAEHAHNAIFILDKQSKLTWINQSYSVLSGNTLEDIKGKDLPSV 323

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSL 556
           L+        +  T + SL    ++      + K+  L  + + +  +   +     Y +
Sbjct: 324 LQ-LDKIQHANIFTLLQSLKAGTSVSFELTNNHKDGTLYWIDVSVTPIFKPNGNIMHYVV 382

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
              DI++ K+ ++KL  A   A+  +  KS FLA +SHE+RTPL  I+G +++I++    
Sbjct: 383 VERDITKKKELEDKLIKAADKADVSNKAKSTFLATMSHELRTPLNGILGMAQIIESN--- 439

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
            + +    +    +  SG+ +L ++ND+LD SKIE  K+ L+      ++ +    +  Q
Sbjct: 440 -IKDEEQHKQIKVLLESGDHLLSLLNDILDFSKIEQNKLELNHASFYFNDVIDPIANTYQ 498

Query: 677 LYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIII----STTH 731
               +K +        N   I + D   ++QI  N++SNA+ FT  G  I +    + T 
Sbjct: 499 SICEDKGLQFIIDNNINEKTIFIGDKPRIRQIIFNLISNAVKFTHKGS-ITLNFSHTLTA 557

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
              + V ++V+DTG+G+    L+   +PF Q   S   +  GTGLGL + K + D   G 
Sbjct: 558 KGEQAVQIKVQDTGIGIRKKRLKHIFEPFIQAETSTTRQYGGTGLGLAIVKQLTDTMKGY 617

Query: 792 FYIFSTPAKGTLIEIIFPLYDT 813
             + S+  KGT   ++ PL  T
Sbjct: 618 ISVNSSEGKGTCFTLVLPLEIT 639



 Score = 43.9 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 43/142 (30%), Gaps = 6/142 (4%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL--LKRQNTW 143
            + +D    L  I++      GN    + G  L  V  +  I   N    L  LK   + 
Sbjct: 288 IFILDKQSKLTWINQSYSVLSGNTLEDIKGKDLPSVLQLDKIQHANIFTLLQSLKAGTSV 347

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             + T    +GT     ID++  PI+  N     +    +        +      +   K
Sbjct: 348 SFELTNNHKDGTLY--WIDVSVTPIFKPNGNIMHY--VVVERDITKKKELEDKLIKAADK 403

Query: 204 FSHLHEIKKGHSSVEKEKYDIF 225
               ++ K    +    +    
Sbjct: 404 ADVSNKAKSTFLATMSHELRTP 425


>gi|241764934|ref|ZP_04762934.1| PAS/PAC sensor signal transduction histidine kinase [Acidovorax
           delafieldii 2AN]
 gi|241365496|gb|EER60261.1| PAS/PAC sensor signal transduction histidine kinase [Acidovorax
           delafieldii 2AN]
          Length = 1425

 Score =  342 bits (876), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 106/571 (18%), Positives = 200/571 (35%), Gaps = 36/571 (6%)

Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
                 +          L S    L        +              +          +
Sbjct: 284 PLVTLVEQPYHATLERWLASLRGPLLFMSVALALIGFMTYASWRSARAREA--------A 335

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIA 363
            R            E              F     G + + N  +  +T           
Sbjct: 336 ERGRNEAQQETARREQELSVLFKSVQELIFRTDPHGRIRFVNARWHTITHQPVETA---R 392

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
           G     +  P+         V    +             +        A+        + 
Sbjct: 393 GKHLRDIVHPESRAC-----VDALFAPEPPTGVRMAQVQLTGPDGGPRALDISVVPLRDP 447

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
             +     G   +       +++++ ++     +LE     I + + EG  LS N+A   
Sbjct: 448 TGQLRGFAGSAVDVTPLLTAQQRLQEQLAFTSQVLECNPLPICMTDPEGRFLSVNQAWED 507

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
             G P   +L    + FL        +    ++L       +         +     +++
Sbjct: 508 FMGVPRASVLGLRNSDFLAPQEARTYDASNDQLLREG--SRVRYEERVRRPDGSFRDVQV 565

Query: 544 IIKKL----PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
               +           +   DI+E+          + +AE+ S  KS+F+A +SHE+RTP
Sbjct: 566 TKVPVFTNNRQPVGILIVKMDITEFLAA-------RDLAEEASRSKSEFVANISHELRTP 618

Query: 600 LTAIIGFSE-VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
           L +I+GFSE  +   R     + +     + I  +G  +L +VNDLLDI+KIES     H
Sbjct: 619 LQSILGFSELGMLRGR----QHEKLAAMFSDIHAAGQRMLVLVNDLLDIAKIESTVGAFH 674

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718
           FE + + + + +  + ++L    KR+ +R +          D    +Q+  N+L+NA+ F
Sbjct: 675 FERIDVRDLIDDVAAEMELLLGRKRLDLRLALGRAPLIAKVDPSRFQQVVRNVLANAVKF 734

Query: 719 TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
           +P G  I IS +   ++ + ++V D G G+   ELE   + F Q   ++     GTGLGL
Sbjct: 735 SPKGSAIDISASTPDDDFIHIQVCDQGPGIPPSELEAVFEAFVQSSQTRDGS-GGTGLGL 793

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            + + ++ A+ G+    + P  G +  I+ P
Sbjct: 794 AICRKIITAHGGRINATNVPGGGAMFHIVLP 824



 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 90/361 (24%), Positives = 162/361 (44%), Gaps = 18/361 (4%)

Query: 464  GIAIINREGII-LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522
            G+A++  +GII +      S      + D L +  +      T +V +  +  I+     
Sbjct: 1058 GVALVGLDGIIRVRVLGGASANVDAQLPDDLLQTMSKTSRGATAAVSSDGIRRIIGFSRV 1117

Query: 523  QTL---------EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH-DISEWKQEKNKLS 572
                        E       +  +   L + +        +       IS        L+
Sbjct: 1118 GDYPLVVLSGTSETEAFAPWRTTRNTVLMLTVLLSLAVVAFVAVFLGSISRLALSHAALT 1177

Query: 573  HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
             ++  A++ +  KS+FLA +SHE+RTPLT+I GF+E+++ +   PL   +       I +
Sbjct: 1178 QSEAEAQRANQAKSEFLAAMSHELRTPLTSIRGFAELMELRSKDPLIQEQS----ALIRQ 1233

Query: 633  SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
                +  ++ ++LD+++IE+G M  H EPV L + V E   L ++ A  K + +  + ++
Sbjct: 1234 GAEHLNALLTEILDLARIEAGAMPAHPEPVVLHDLVHEVSELFRVSAVAKSLALTAAVSD 1293

Query: 693  NIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIST-THTSNEEVILRVRDTGVGMTN 750
              P+ ++ D   +KQI  N+LSNAI FTP+G ++ I         +V   V DTG G+  
Sbjct: 1294 AAPQTLVTDRLKLKQILSNLLSNAIKFTPAG-RVEIFVDACPDGSQVHFHVNDTGPGIPA 1352

Query: 751  YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
                   + F Q       +  GTGLGL L++A+ +   G   + S   +G+   +  PL
Sbjct: 1353 SLHGVIFEKFSQGHARISYQHGGTGLGLSLSRALAELLGGTLTVRSAVGEGSTFTLSLPL 1412

Query: 811  Y 811
            +
Sbjct: 1413 H 1413



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/435 (8%), Positives = 93/435 (21%), Gaps = 41/435 (9%)

Query: 176 SGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR 235
           +G   +  +   +  +  +                     +++    ++  +   P  L 
Sbjct: 41  TGSLMWMELRRAQAQDRQQLELLASVMDAHATQLFDNTKVALDSLAKNLTHEAISPAQLE 100

Query: 236 MKN----KVSSLTEYYAHKD--DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYF 289
            +     +        A  D    +     P     +  L         +          
Sbjct: 101 AQQSYRLQGLPFLRSIAALDIQGRVLASSAPSDRGGKVDLARLPAAPATDDRVVIGPWVN 160

Query: 290 GTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC-PIPF--------------- 333
           G             +      +          +   V +  P                  
Sbjct: 161 GRTLVADPRRGAVPARLGFIPMVRLVHLSPTTSVLLVAQINPDALANYQQQLTNGTSGGT 220

Query: 334 ---FVYSHGNLFYAN-----PSFLLLTKYKSVDDIE----IAGGLSTLLDAPKLSDNNAI 381
                   G L          +   L  +     +        G   + DA KL   +  
Sbjct: 221 QVLLALDSGTLLTQVGGETPAAGTRLRDHPVFQGLLPTHKGTYGPVRIFDARKLGAWHTS 280

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
               L         A+                  +       +         E  +    
Sbjct: 281 SSQPLVTLVEQPYHATLERWLASLRGPLLFMSVALALIGFMTYASWRSARAREAAERGRN 340

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
             +++      +L  + ++  + I   +  G I   N     +   PVE    K     +
Sbjct: 341 EAQQETARREQELSVLFKSVQELIFRTDPHGRIRFVNARWHTITHQPVETARGKHLRDIV 400

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLT 557
              + + ++          +R         +  +    +L I +  L         ++ +
Sbjct: 401 HPESRACVDALFAPEPPTGVRM---AQVQLTGPDGGPRALDISVVPLRDPTGQLRGFAGS 457

Query: 558 MHDISEWKQEKNKLS 572
             D++     + +L 
Sbjct: 458 AVDVTPLLTAQQRLQ 472



 Score = 58.1 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 28/254 (11%), Positives = 65/254 (25%), Gaps = 14/254 (5%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144
             +  D HG ++ ++               G  L D+      +    +  L   +    
Sbjct: 363 LIFRTDPHGRIRFVNARWHTITHQPVETARGKHLRDIVHP---ESRACVDALFAPEPPTG 419

Query: 145 GKTTLWPIEGTNLYVP-IDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
            +     + G +     +D++ +P+     +  GF G  +          +   +     
Sbjct: 420 VRMAQVQLTGPDGGPRALDISVVPLRDPTGQLRGFAGSAV--DVTPLLTAQQRLQEQLAF 477

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPP----PHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
            S + E       +   +    S            R        +++ A ++        
Sbjct: 478 TSQVLECNPLPICMTDPEGRFLSVNQAWEDFMGVPRASVLGLRNSDFLAPQEARTYDASN 537

Query: 260 PLLTSEESSLPEQEDFHTINLNQY----TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
             L  E S +  +E     + +      TK   F   +         +      +     
Sbjct: 538 DQLLREGSRVRYEERVRRPDGSFRDVQVTKVPVFTNNRQPVGILIVKMDITEFLAARDLA 597

Query: 316 DEGENLTPETVDKC 329
           +E      E V   
Sbjct: 598 EEASRSKSEFVANI 611



 Score = 54.6 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 23/241 (9%), Positives = 54/241 (22%), Gaps = 5/241 (2%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            D  G    +++     +G     ++G+R  D          +   D L R+ +      
Sbjct: 492 TDPEGRFLSVNQAWEDFMGVPRASVLGLRNSDFLAPQEARTYDASNDQLLREGSRVRYEE 551

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                  +    + +  +P+++ NR+  G     IV +  +     A     +   S   
Sbjct: 552 RVRRPDGSFR-DVQVTKVPVFTNNRQPVG---ILIVKM-DITEFLAARDLAEEASRSKSE 606

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
            +      +      I            +++  +      H            L      
Sbjct: 607 FVANISHELRTPLQSILGFSELGMLRGRQHEKLAAMFSDIHAAGQRMLVLVNDLLDIAKI 666

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
                 FH   ++                                      +   + V  
Sbjct: 667 ESTVGAFHFERIDVRDLIDDVAAEMELLLGRKRLDLRLALGRAPLIAKVDPSRFQQVVRN 726

Query: 329 C 329
            
Sbjct: 727 V 727


>gi|289668325|ref|ZP_06489400.1| two-component system sensor histidine kinase-response regulator
           hybrid protein [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 674

 Score =  342 bits (876), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 96/518 (18%), Positives = 190/518 (36%), Gaps = 41/518 (7%)

Query: 313 AYFDEGENLTPETVDKCPIPFFVYS---HGN------LFYANPSFLLLTKYKSVDDIEIA 363
           A       +  E        F V      G       +   N +F   T   +       
Sbjct: 19  AEPFLDPAMYHEIFHNIDAGFCVIDMVFDGEQAVDYLIRTTNGAFERYTGLSTNAL---N 75

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
             +  LL      +                I    +   ++          +        
Sbjct: 76  VSIRNLLPE---HEQEWFDRYGHVARTGNRIHFEMQAKALKR--------WYSVDAFRVG 124

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
            PE      +  +  + +  +R++     +  ++ +     + +++ +G++   N A  +
Sbjct: 125 PPEQGRVAILFMDITERKRVERELAESEARFSALADGLPMPVWVLDAQGVVRFVNSAYGE 184

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
            FG  +       +   L  +             SL  +  L  +      + +   + +
Sbjct: 185 FFGLDISSGTVSAWRELLHPDDLPTFQ--FELTASLQEQHGLRALVRARRHDGQWRWIEM 242

Query: 544 IIKKLPFSSCYSLTMH----DISEWKQEK-------NKLSHAKKIAEKESSHKSDFLARV 592
                  +    + +     D++E ++ +            A+  AE  +  K +FLA +
Sbjct: 243 TATPRYSADGRFIGLAGSSPDVTEQREIELAREQLLESERSARNEAESMARLKDEFLATL 302

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHE+RTPLT I+G+SE++  +      N +     + I  S      +++D+LD+S +  
Sbjct: 303 SHELRTPLTTILGWSELLLQRVEEGQPNYKG---LSVIASSARAQKRLISDMLDLSSMLL 359

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712
           GK+ L  E + L E V EA++  +L A  K  ++          +L D   ++Q+  N+L
Sbjct: 360 GKVQLEVESLDLVEQVREALNTQELAAEGKDQILELHVPPTPCLVLGDATRLQQVLWNLL 419

Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           SNAI FTP+ G+I +S     +  +++ V D+G G+    L      F Q   +   +  
Sbjct: 420 SNAIKFTPAHGRIDVSIE-RDDGHLVVSVSDSGDGIAAEFLPHLFGRFRQADGTTTRQHG 478

Query: 773 GTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFP 809
           G GLGL + + +V+ + G+    S    KG    +  P
Sbjct: 479 GLGLGLAIVQQLVEMHGGQVGATSGGRGKGATFTVRLP 516



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 46/462 (9%), Positives = 118/462 (25%), Gaps = 46/462 (9%)

Query: 54  FTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM 113
           F D  +         +SE  F        +   W +DA G ++ ++    +  G      
Sbjct: 135 FMDITERKRVERELAESEARFSALADGLPMP-VWVLDAQGVVRFVNSAYGEFFGLDISSG 193

Query: 114 IGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172
                 ++     +      +   L+ Q+           +G   +  I++ A P YS +
Sbjct: 194 TVSAWRELLHPDDLPTFQFELTASLQEQHGLRALVRARRHDG--QWRWIEMTATPRYSAD 251

Query: 173 REFSGFRGFG-IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231
             F G  G    V   R     R      ++   +  E        E         ++P 
Sbjct: 252 GRFIGLAGSSPDVTEQREIELAREQLLESERSARNEAESMARLKD-EFLATLSHELRTPL 310

Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291
             +   +++          +    +       +++  + +  D  ++ L +   +     
Sbjct: 311 TTILGWSELLLQRVEEGQPNYKGLSVIASSARAQKRLISDMLDLSSMLLGKVQLEVESLD 370

Query: 292 LQN---NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYA---- 344
           L      +  + E  +      L  +      L      +     +      + +     
Sbjct: 371 LVEQVREALNTQELAAEGKDQILELHVPPTPCLVLGDATRLQQVLWNLLSNAIKFTPAHG 430

Query: 345 --NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT 402
             + S      +  V   +   G++                    +     +  +     
Sbjct: 431 RIDVSIERDDGHLVVSVSDSGDGIAAEFLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQL 490

Query: 403 IQWNREN-----------SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR----KM 447
           ++ +              +     +P    +Q      +             +     ++
Sbjct: 491 VEMHGGQVGATSGGRGKGATFTVRLPEHIPDQAKRPRRELRRRLMSEQIVEARALNGLRL 550

Query: 448 EIEVMQ------LCSILE----------ATSDGIAIINREGI 473
                Q      L  +LE          + +D +A+I+  G 
Sbjct: 551 LAVEDQPDMLDYLRRLLEEQGAEVVTAGSATDALALIDHRGH 592



 Score = 55.4 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/175 (10%), Positives = 50/175 (28%), Gaps = 11/175 (6%)

Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLL 350
                + +  ++       +     E E       D  P+P +V    G + + N ++  
Sbjct: 125 PPEQGRVAILFMDITERKRVERELAESEARFSALADGLPMPVWVLDAQGVVRFVNSAYGE 184

Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
                    ++I+ G  +        D+       L  S +      A L   + +    
Sbjct: 185 FFG------LDISSGTVSAWRELLHPDDLPTFQFELTASLQEQHGLRA-LVRARRHDGQW 237

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRI---NKRKMEIEVMQLCSILEATS 462
             +      + +     +   G  P+  + R     + ++        +  E+ +
Sbjct: 238 RWIEMTATPRYSADGRFIGLAGSSPDVTEQREIELAREQLLESERSARNEAESMA 292


>gi|117921773|ref|YP_870965.1| multi-sensor hybrid histidine kinase [Shewanella sp. ANA-3]
 gi|117614105|gb|ABK49559.1| multi-sensor hybrid histidine kinase [Shewanella sp. ANA-3]
          Length = 1122

 Score =  342 bits (876), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 103/519 (19%), Positives = 206/519 (39%), Gaps = 27/519 (5%)

Query: 311 LSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
           LS      E+     ++        +   G +   N +   +  +   + +   G     
Sbjct: 270 LSLLAKSNEDRMRAMMNTAVDGIITIDGQGIIVNVNKAVTTILGWSPAELL---GANVKK 326

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
           +    +  ++        ++    I  + R   ++   +    +            +   
Sbjct: 327 IVPEAIRPHHDGYLARYAQTREAQIIGTGR--EVEAQHKAGHLVPVRLSIGHVMQGKAHY 384

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII--NREGI-ILSTNRAVSKLFG 486
             G   +       +++++I   +  S++     GIA    + EG  ++  + AV  + G
Sbjct: 385 FVGFISDLSQRNEMEQELKINEAKFRSLITNIP-GIAYRCKSTEGWPMVFISDAVQNITG 443

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
           YP ED        F            +  I +     T          +  +  L     
Sbjct: 444 YPAEDFELPHPKRFFSDLYHP---DDIETIYAQAQPPTFSMEYRIIRADGGVRWLFEHGN 500

Query: 547 KLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
            +   +         + DI+E K+ +  L  AK  AE+ ++ ++ FLA +SHEIRTP+ A
Sbjct: 501 YILDETSKEVWIDGFLMDITERKEMEQDLVTAKNNAEQAAAARAAFLANMSHEIRTPMNA 560

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           IIGFS+++         +    +  + I+RS   +L ++ND+LD +K++ GK+ L     
Sbjct: 561 IIGFSDILLESVL----DLEQQKQLSTINRSAKSLLHLLNDVLDSAKLDKGKLELENRVF 616

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPS 721
            L + +   IS + L A ++R+ +    A  +    +     ++Q+ +N++ NA+ FT  
Sbjct: 617 CLTDEIDTVISTLWLQAKKQRLSLEVDVAPTMAANFIGSPERIRQVLINLIGNAVKFTCE 676

Query: 722 GGQIIIST----THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
           G  + +      T     ++   + DTG+GM+  +L +  + F Q   S   +  GTGLG
Sbjct: 677 G-TVTVRVFPQDTTQDTTKITFEIIDTGIGMSPEQLNRVFEAFAQADASMSRKYGGTGLG 735

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
             ++K +V+   G+    ST  +G+      PL  +S P
Sbjct: 736 TTISKQLVELMGGELTAESTLGQGSTFRFTIPLQPSSEP 774



 Score = 41.9 bits (97), Expect = 0.41,   Method: Composition-based stats.
 Identities = 22/243 (9%), Positives = 68/243 (27%), Gaps = 20/243 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP--NNHIGDLLKRQNTWY-- 144
           ID  G +  +++ +   +G    +++G  +  +     I P  + ++    + +      
Sbjct: 295 IDGQGIIVNVNKAVTTILGWSPAELLGANVKKIV-PEAIRPHHDGYLARYAQTREAQIIG 353

Query: 145 --GKTTLWPIEGTNLYVPIDLA-ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
              +       G    VP+ L+    +  +   F GF     +      N+     K  +
Sbjct: 354 TGREVEAQHKAGHL--VPVRLSIGHVMQGKAHYFVGF-----ISDLSQRNEMEQELKINE 406

Query: 202 KKFSHLHEIKK--GHSSVEKEKYDIFSQQSPPPHLR-MKNKVSSLTEYYAHKDDVLKTEK 258
            KF  L        +     E + +        ++     +   L        D+   + 
Sbjct: 407 AKFRSLITNIPGIAYRCKSTEGWPMVFISDAVQNITGYPAEDFELPHPKRFFSDLYHPDD 466

Query: 259 YPL--LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
                  ++  +   +      +       ++   + + + +           +     +
Sbjct: 467 IETIYAQAQPPTFSMEYRIIRADGGVRWLFEHGNYILDETSKEVWIDGFLMDITERKEME 526

Query: 317 EGE 319
           +  
Sbjct: 527 QDL 529


>gi|307155071|ref|YP_003890455.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306985299|gb|ADN17180.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 1200

 Score =  342 bits (876), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 96/377 (25%), Positives = 173/377 (45%), Gaps = 17/377 (4%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI--LRKPFTVFLE 502
             +     +    +  ++D I   +     +  +    K+ G            +   + 
Sbjct: 570 ADLRESEERYSLAVSGSNDAIWDWDLRTNSVYYSPVWMKISGEDNYYYSNCWSLWQENIH 629

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTM 558
                ++   +   L        E+       +   + +    K L            T+
Sbjct: 630 SEDLPLVLSSIQNHLEGKNP-IYEQTYRIKHCQGHYIWVEAKAKCLHDREGKPYRMVGTI 688

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            DI+  KQ + +L  AK+ AE  +  KS F+A +SHEIRTP+ AI+GF E++ N      
Sbjct: 689 TDITAKKQAEEELKAAKEAAEIANRIKSQFIANISHEIRTPMNAILGFCELLLNIH---- 744

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
            +PR + Y   I  SG  +L ++ND+LD+SKIE+GK+ L++EP++L E + +   +    
Sbjct: 745 NDPRTLSYIQSISSSGRTLLALINDILDLSKIEAGKLELNYEPINLRELIIDVCQIFSTQ 804

Query: 679 ANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSG-GQIIISTT--HTSN 734
           A  K++ + T F  N+P ++  D   ++QI  NI+ NA+ FT  G  ++ + +    T+N
Sbjct: 805 AQTKKLQLLTEFEPNVPHVINFDEVRLRQILFNIIGNALKFTEKGYVKVTVFSENLATNN 864

Query: 735 EEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
             +   + V DTG+G+   + ++    F Q       +  GTGLGL + K + +   G+ 
Sbjct: 865 NYIQLKISVEDTGIGIATGQQDRIFDMFTQSEGQSTRKYGGTGLGLSITKRLTEMLGGQI 924

Query: 793 YIFSTPAKGTLIEIIFP 809
            + S   KG++  +IFP
Sbjct: 925 ILQSELGKGSIFTLIFP 941


>gi|169602473|ref|XP_001794658.1| hypothetical protein SNOG_04238 [Phaeosphaeria nodorum SN15]
 gi|160706176|gb|EAT87998.2| hypothetical protein SNOG_04238 [Phaeosphaeria nodorum SN15]
          Length = 968

 Score =  342 bits (876), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 112/640 (17%), Positives = 229/640 (35%), Gaps = 53/640 (8%)

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
            L  +    ++        F  Q        + +++             +  +   L   
Sbjct: 13  ALMRLLPRDATYTPGDQRAFLSQFTVWTEDFQRELTIDEFPIVELCRTRQKLEKRRLGLR 72

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
           +     +  F  I+        +  T +                 ++A  +E E      
Sbjct: 73  QPVTGTRLVFEVISEPVI----HDETGEFLGGIVIFKDITEFTKQIAAQIEENEKQFEYI 128

Query: 326 VDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
            +  P+  +  + +G   + +  +   T       +        L   P        +  
Sbjct: 129 ANFMPVMVWTTTPNGLHDWFSQRWYDYTGLTEDQSLGEG---WRLPFHPDDMTATKSR-W 184

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
               +         R             M        +   + +   G   +  D  + +
Sbjct: 185 FHSLATGDEYNTEYRCQRF---DGEWRWMLGRALPFFDDDGKIVKWFGTCTDIHDLVMAR 241

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILS------TNRAVS--KLFGYPVEDILRKP 496
           ++      QL  ++      +  +NR+  ++         R     +L G  + D+    
Sbjct: 242 QEARRTREQLQQVIAHAKILLWAVNRDNRLVLLEGDTKWRRDGENTELLGNDIYDVFG-- 299

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL--GSTKEEKLLSLRIIIKKLPFSS-- 552
                           + EIL+   +  + +  +        +L+ L    +        
Sbjct: 300 ----FTGADRDRWREPIQEILNGKQQDEIVERYMSENRYFRTRLVPLLNASRIAGAEGTA 355

Query: 553 ---CYSLTMHDISEWKQEKNKLSHAKKIAEKE----------SSHKSDFLARVSHEIRTP 599
                     DI+E ++ +++L   +K  E+           S  KS FLA +SHEIRTP
Sbjct: 356 YVDGVIGVSMDITELREREDQLREQEKENERLLANAAAAKEASRMKSQFLANMSHEIRTP 415

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           +  +IG SE++ +       +    E A  I RS N +L ++ND+LD SK+ESG++++  
Sbjct: 416 IAGVIGMSELLSDMNL----DEEQKECAENIHRSANSLLTVINDILDFSKVESGRLDVEE 471

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI---PRILADLRSVKQIALNILSNAI 716
              SL   + +   ++   A  K ++ +++  + +    R++ D   ++QI  N+L+N+I
Sbjct: 472 VQFSLSVVLRDVNKMMSFAAQRKGLVYQSTIQDEVEQDLRVMGDPGRLRQILTNVLTNSI 531

Query: 717 HFTPSGG-QIIISTTHTSNEEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
            FT  G  ++ +S +  +N+ V     V DTG+G+     ++  +PF Q  +S   R  G
Sbjct: 532 KFTSEGSVKLSVSISQETNDSVTVNFSVIDTGIGIEEEVRKRLFQPFSQADSSTARRFGG 591

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
           TGLGL ++K +V+   G+ ++ S   +GT      P    
Sbjct: 592 TGLGLTISKNLVELMKGQIWLDSKLGQGTTATFWIPFSRA 631



 Score = 68.5 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 45/418 (10%), Positives = 99/418 (23%), Gaps = 36/418 (8%)

Query: 69  DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID 128
           ++E  F +      V   W    +G     S+      G    + +G           + 
Sbjct: 120 ENEKQFEYIANFMPV-MVWTTTPNGLHDWFSQRWYDYTGLTEDQSLGEGWRLPFHPDDMT 178

Query: 129 PNNHIG-DLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187
                    L   + +  +      +G   +  +   ALP +  + +    + FG     
Sbjct: 179 ATKSRWFHSLATGDEYNTEYRCQRFDGE--WRWMLGRALPFFDDDGKIV--KWFGTCTDI 234

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247
                 R   +R  ++   +    K           +   +      R       L    
Sbjct: 235 HDLVMARQEARRTREQLQQVIAHAKILLWAVNRDNRLVLLEGDTKWRRDGENTELLGNDI 294

Query: 248 AHKDDVLKTEKYPLLTSEESSL---PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY-- 302
                    ++       +  L    + E            +     L N S+ +     
Sbjct: 295 YDVFGFTGADRDRWREPIQEILNGKQQDEIVERYMSENRYFRTRLVPLLNASRIAGAEGT 354

Query: 303 ----------LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLT 352
                     +             E E      +             + F AN S  + T
Sbjct: 355 AYVDGVIGVSMDITELREREDQLREQEKENERLLANAAAAKEASRMKSQFLANMSHEIRT 414

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
                  I    G+S LL    L +        ++RS  + +     +          L 
Sbjct: 415 P------IAGVIGMSELLSDMNLDEEQKECAENIHRSANSLLTVINDILDFSKVESGRLD 468

Query: 413 -------MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM--QLCSILEAT 461
                  ++ +  +          + G+  +       ++ + +     +L  IL   
Sbjct: 469 VEEVQFSLSVVLRDVNKMMSFAAQRKGLVYQSTIQDEVEQDLRVMGDPGRLRQILTNV 526


>gi|254470855|ref|ZP_05084258.1| alkaline phosphatase synthesis sensor protein phor [Pseudovibrio
           sp. JE062]
 gi|211959997|gb|EEA95194.1| alkaline phosphatase synthesis sensor protein phor [Pseudovibrio
           sp. JE062]
          Length = 817

 Score =  342 bits (876), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 123/723 (17%), Positives = 250/723 (34%), Gaps = 40/723 (5%)

Query: 113 MIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALP--IYS 170
           + G    ++     +         L  ++    +  L  + G      + L  +      
Sbjct: 109 VAGHLPENLELSGGLSQLVEFETWLDVKSAEALRAFLEHLRGHGEVFRLTLTTIDGVYLE 168

Query: 171 RNREFSGFRGFGIVHVNRVDNDPRALG-------KRLDKKFSHLHEIKKGHSSVEKEKYD 223
            +   +G      +     D    A         +        L +   G +        
Sbjct: 169 ASGHTAGGLAVLRLRDLTGDRQLSARLSEQNKELREQISSLHSLLDALPGPAWQRDHHGQ 228

Query: 224 IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY 283
           +    +            ++ +      +     K  ++   +               + 
Sbjct: 229 LVWVNTAYVDAVEAESTRTVVDDQIELLEAKGRNKLNMMRQTDGVYHSPMPVVAAGERRV 288

Query: 284 TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLF 342
                   + +    +           +             T+D+   P  V+     L 
Sbjct: 289 ---FELTDVNSEHGNAGLAQDISELERVQGQLRRTLESHTRTLDQLQTPVAVFGADHRLQ 345

Query: 343 YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA---- 398
           + N ++  L              +       K  +   +  +   R              
Sbjct: 346 FYNAAYRSLWD------------IDQSFLETKPEEGELLDALRAARKLPEQADYRGWRTK 393

Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL---- 454
            L   Q     +      P  +  +   +    G      +    +  +E     L    
Sbjct: 394 HLECYQALDAQAFWWHL-PDGRTLRVIASPHPQGGVTYFYENVTEQLDLESRFNALTRVQ 452

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM--NHY 512
              L+  ++ +A+    G +  +N A ++++G   E +   P    L  N   +M  +  
Sbjct: 453 RETLDHLTEAVAVFGSNGRMRLSNPAFAEIWGLSQEFLEGAPHVNDLLDNCRELMGDSDR 512

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572
             E+       +  + ++    E    S+   +          LT  ++++    +  L 
Sbjct: 513 WQELARGVTGLSDNRTSVSGRMERIDGSVIDYVTVPLPDGGTLLTFVNVTDTVNVERALH 572

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
                 ++    K+ F+  VS+E+R+PLT IIGF++++ + +FG L  P+  EY +YI  
Sbjct: 573 ATNDALQEADQLKNAFIQHVSYELRSPLTTIIGFAQLLGDAKFGDLS-PKQEEYTDYILS 631

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
           S + +L I+ND+LD++ +++G M L    V + + VSEA+  ++    E  I +RT   +
Sbjct: 632 SSSALLHIINDILDLATVDAGIMELEISEVDVAQTVSEAVEGLKDRLVESDITLRTHMPD 691

Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752
           +I  + AD R ++Q+  N+LSNAI ++  GG + IS     N E+  R++D G G+    
Sbjct: 692 DIGILKADERRLRQVLFNLLSNAIRYSDKGGLVDISCQREEN-EIRFRIKDHGAGIPQEM 750

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
           LE+    F  +        +G GLGL + K+ V+ + G   I S   +GT ++  FPL  
Sbjct: 751 LEQVFSRF--VGRGAGGNRQGVGLGLSIVKSFVELHGGTVDITSEEGQGTTVDCTFPLEP 808

Query: 813 TSH 815
             H
Sbjct: 809 HIH 811



 Score = 67.4 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 45/421 (10%), Positives = 109/421 (25%), Gaps = 38/421 (9%)

Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL-----RMK 237
           I+ + +   D  A   RL+     L E +     V   +          P        + 
Sbjct: 69  ILQLRQDRADAMARIDRLE----SLLETEDSLLLVWDGEAKHPGVAGHLPENLELSGGLS 124

Query: 238 NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297
             V   T       + L+     L    E           + L           +     
Sbjct: 125 QLVEFETWLDVKSAEALRAFLEHLRGHGEVFRLTLTTIDGVYLEASGHTAGGLAVLRLRD 184

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKS 356
            + +          +    E  +     +D  P P +    HG L + N ++        
Sbjct: 185 LTGDRQLSARLSEQNKELREQISSLHSLLDALPGPAWQRDHHGQLVWVNTAY-------- 236

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
           VD +E     + + D  +L +      + + R       +              +A    
Sbjct: 237 VDAVEAESTRTVVDDQIELLEAKGRNKLNMMRQTDGVYHSPM----------PVVAAGER 286

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476
              +           G+  +  +    + ++   +      L+     +A+   +  +  
Sbjct: 287 RVFELTDVNSEHGNAGLAQDISELERVQGQLRRTLESHTRTLDQLQTPVAVFGADHRLQF 346

Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE-------KIT 529
            N A   L+      +  KP    L     +               + LE       +  
Sbjct: 347 YNAAYRSLWDIDQSFLETKPEEGELLDALRAARKLPEQADYRGWRTKHLECYQALDAQAF 406

Query: 530 LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
                + + L +             +    +++E    +++ +   ++  +   H ++ +
Sbjct: 407 WWHLPDGRTLRVIASPHP---QGGVTYFYENVTEQLDLESRFNALTRVQRETLDHLTEAV 463

Query: 590 A 590
           A
Sbjct: 464 A 464


>gi|194333102|ref|YP_002014962.1| multi-sensor hybrid histidine kinase [Prosthecochloris aestuarii
           DSM 271]
 gi|194310920|gb|ACF45315.1| multi-sensor hybrid histidine kinase [Prosthecochloris aestuarii
           DSM 271]
          Length = 1040

 Score =  342 bits (876), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 136/754 (18%), Positives = 260/754 (34%), Gaps = 113/754 (14%)

Query: 75  VFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN-HI 133
           VF  I         +D +  +   +    K  G     +IG +  ++       P+   +
Sbjct: 77  VFHAISHPTII---LDENQIILSANPATAKAFGLDTPDLIGRKCTELFHATWCTPDRCPM 133

Query: 134 GDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193
            ++   +N   G           L     ++  P+ +   +        I+H+       
Sbjct: 134 QEVKMTRNPAEGIMIS-----ETLGRYFLVSCTPVLNTTGDVE-----KIIHIATDITQQ 183

Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253
               + L +  S L  ++          +     Q+        N+V S+       +  
Sbjct: 184 IKAEQTLQRSDSILSTLQ----------FVTTELQNSHRFEETINRVLSMLGTVLEVNRA 233

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
              E   +                 NL    +  Y  + +                SL  
Sbjct: 234 YIVECQAV----------DTKTPFTNLRYLWQDPYALSKKQKPLFQEPLSDRGERASLLK 283

Query: 314 YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVD--DIEIAGGLSTLLD 371
             ++                           N     +T   S     I  A  ++++L 
Sbjct: 284 TLEK---------------------------NLVLQRITNDTSGAERAILQAAHITSILA 316

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
            P   +      +               +  ++   E   A                   
Sbjct: 317 IPINIEKKWWGFIGFDDCRNDRSWTRTEIEALRSAAETLGAAIIH--------------- 361

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
                    +    K++    +  ++L A  D + ++++EG+ L  +   +     P + 
Sbjct: 362 ---------QRTTLKLKESEARNGAMLNALPDMLFVLDKEGVCLDFHARNNNEPHPPAKQ 412

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
            + K       +   S + H + E+      +  E       +  K     I +  L   
Sbjct: 413 FIGKSLKEIFPEAHSSALQHLIHEVSESGAPKIHEYQM---KRSGKTSHYEIRVVPLGTD 469

Query: 552 SCYSLTMHDISEWKQEKNKLSHAKK--------------IAEKESSHKSDFLARVSHEIR 597
                 + ++++ K+ +NKL    +               A++ S  KS+FLA +SHEIR
Sbjct: 470 K-TLNIVRNMTDQKETENKLLRTNRKLENASRKAKKLAEQAQEASKAKSEFLANISHEIR 528

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TP+  +IG + ++      P    +   YA  I  S   +LD++ND+LD+SKIE+GK+ L
Sbjct: 529 TPMNGVIGMTGLLLETDLTP----QQHRYAGTIASSAQSLLDLINDILDVSKIEAGKLTL 584

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAI 716
                 L E + +  +   + A +K +    S    IP R+  D   ++QI +NI  NA+
Sbjct: 585 EILDFDLQELMDDFAASFAIQAEQKNLEFLCSIEPGIPTRLTGDPGRLRQILMNIAGNAV 644

Query: 717 HFTPSGGQ-IIISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
            FT  G   I ++     +++V+LR  +RDTG+G+   +++   + F QI  S   +  G
Sbjct: 645 KFTSKGEIAIYVTLDSDCDDQVVLRFCIRDTGIGIAKEKIDTLFEKFTQIDASATRQYGG 704

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           TGLGL +AK +V+   G   + ST  +G+L    
Sbjct: 705 TGLGLSIAKDLVELMQGSIGVESTVNQGSLFWFT 738


>gi|197117192|ref|YP_002137619.1| sensor histidine kinase response regulator [Geobacter bemidjiensis
           Bem]
 gi|197086552|gb|ACH37823.1| sensor histidine kinase response regulator [Geobacter bemidjiensis
           Bem]
          Length = 882

 Score =  341 bits (875), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 97/375 (25%), Positives = 171/375 (45%), Gaps = 16/375 (4%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
           + +      +   ++EA    + I + +  +   N  + +  G      +       L  
Sbjct: 369 RNEARASEARYRGMIEAFDGLMYICSPDRHLEFMNERLIERTGRDGTGGICHQVLHDLPA 428

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR-IIIKKLPFSSCYSLTMHDIS 562
             P      +       ++         S ++ +   +    ++    +S     + D++
Sbjct: 429 PCPWCH--GVESFEGKSVQWEWN-----SPEDGRWYQVFNTTVENAYGTSSKLAMITDVT 481

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E K+ +  L  A   AE+ +  KS+FL+ +SHEIRTP+  +IG +++++        N  
Sbjct: 482 ERKEAEEALRQAMDAAERANRAKSEFLSNMSHEIRTPMNGVIGMTQLLELTEL----NAE 537

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             EY + +   G  +L ++ND+LDISKIE+G M L  E  SL +++ + +      A EK
Sbjct: 538 QREYVSSLKSCGKNLLTLINDILDISKIEAGMMTLESEQFSLLQSIRDVVMTQNPAAREK 597

Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILR 740
            + ++   A ++P  +L D    KQI LN+L NA+ FT  GG  I ++         + +
Sbjct: 598 ALRLQVEVAPDVPDAVLGDQLRFKQILLNLLGNAVKFTEKGGVTITVTLLEQPVAPPLFQ 657

Query: 741 --VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
             VRDTGVG+    LE+  KPF Q+  S   +  GTGLGL +++ + +   G   I STP
Sbjct: 658 MAVRDTGVGIAAEALEEIFKPFVQVDGSTTRKYGGTGLGLSISRRLAEMMGGSISIESTP 717

Query: 799 AKGTLIEIIFPLYDT 813
             G+   +  PL   
Sbjct: 718 GVGSCFTLTLPLSPA 732


>gi|295703343|ref|YP_003596418.1| two-component sensor histidine kinase/ response regulator [Bacillus
           megaterium DSM 319]
 gi|294801002|gb|ADF38068.1| two-component sensor histidine kinase/ response regulator [Bacillus
           megaterium DSM 319]
          Length = 1012

 Score =  341 bits (875), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 108/408 (26%), Positives = 200/408 (49%), Gaps = 21/408 (5%)

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
            E     G   +  D    + K+        S+L   S+G+   + EG +++ N   +K+
Sbjct: 471 GEVQEVIGSIVDITDLHEAREKLAKSESMYRSVLSTMSEGVVFHDLEGNLIAANAYAAKI 530

Query: 485 FGYPVEDILRKPF----TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG-STKEEKLL 539
              P + +L           +  +        +  +  L  ++ +    +G    E+KL 
Sbjct: 531 LNVPYDQMLSVNPFGLDWEIIHPDGTPFALEDIPSVRCLHTKEPVRNTVMGIYLNEKKLT 590

Query: 540 SLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHA-------KKIAEKESSHKSDFL 589
            L +  + L  S       +T +DI++ ++++  L H+       K+ AEK +  KS+FL
Sbjct: 591 WLSVNAEPLQESKYYKGVVVTFYDITKQQEQEQDLLHSNQQMIIAKEEAEKANQAKSEFL 650

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
           ++VSHE+RTPL +I+G+++ I  ++       + +     I ++GN +L ++N+ LD+SK
Sbjct: 651 SKVSHELRTPLNSILGYAQ-ILEEQGEKDLTEKQLNRIRKILKAGNHLLYLINETLDLSK 709

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN-NIPRILADLRSVKQIA 708
           IESG + ++ EPVS+ EA+ +A+ +++  A +K  ++ T F       I  D    +QI 
Sbjct: 710 IESGHLAINLEPVSVKEAIEDALKIMKPLAKDKHSILYTRFHAYQEVFIEVDELRFQQIL 769

Query: 709 LNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
           LN+L+NAI ++P+   I I T  T +  V + + D G G+   EL +  +PF ++    +
Sbjct: 770 LNLLTNAIKYSPAYRDITIYTDITQH-HVTISIEDKGFGIPASELNRIFEPFYRV---NR 825

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           +  +GTG+GL L K +V    G   + S   KG+   + FP+     P
Sbjct: 826 LEKDGTGIGLALVKQLVVLMNGTCGVRSEEGKGSTFWVRFPIVHPPVP 873



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 20/162 (12%), Positives = 60/162 (37%), Gaps = 8/162 (4%)

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
           +    +       +   R+ +++     S+     + +  ++  G I + N    +L GY
Sbjct: 230 LLIVFLLVAAFKRQEEVRESQLKEEYYQSLFNYNPNIVCAVDLYGNIQTINPKGIELTGY 289

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
            +  + + PF     +   +    Y+ + LS D   ++        K+ + + + +    
Sbjct: 290 TLHQMEKIPFPYMFREAEQA--EEYMWKSLSGD---SVYYEATLIRKDNQPVYVEVTQMP 344

Query: 548 L---PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
           +          +   D+++ K+ + +L   +K  ++  S + 
Sbjct: 345 IIVHGQIKGSYVIAKDVTDRKKAQQQLLDLQKDLKRTLSQQD 386



 Score = 62.7 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/336 (13%), Positives = 99/336 (29%), Gaps = 24/336 (7%)

Query: 282 QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GN 340
           Q        ++       F  ++              E       +  P         GN
Sbjct: 216 QAPFSNIIASITITLLIVFLLVAAFKRQEEVRESQLKEEYYQSLFNYNPNIVCAVDLYGN 275

Query: 341 LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400
           +   NP  + LT Y           +  +       +    +  M        +   A L
Sbjct: 276 IQTINPKGIELTGYT-------LHQMEKIPFPYMFREAEQAEEYMWKSLSGDSVYYEATL 328

Query: 401 HTIQWNRENSLA-MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459
             I+ + +     +T +P        +      I  +  D +  ++++      L   L 
Sbjct: 329 --IRKDNQPVYVEVTQMPIIV---HGQIKGSYVIAKDVTDRKKAQQQLLDLQKDLKRTLS 383

Query: 460 ATSDGI--AIINREGII-LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
                I   + N +G I       + +  GY   D++ K    FL ++       Y  + 
Sbjct: 384 QQDGAIFKFVKNDKGYIHTMCEGKMVREMGYEEIDVVGKTLEEFLPESYAKENKRYYEKA 443

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKK 576
            + +         L +  +    +  I             ++ DI++  + + KL+ ++ 
Sbjct: 444 WAGEKVS---YEVLLN--DFAYYTKLIPHIYKGEVQEVIGSIVDITDLHEAREKLAKSES 498

Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
           +     S  S+    V H++   L A   ++  I N
Sbjct: 499 MYRSVLSTMSE--GVVFHDLEGNLIAANAYAAKILN 532



 Score = 55.0 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 37/377 (9%), Positives = 101/377 (26%), Gaps = 25/377 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL---KRQNTWYG 145
           +D +G ++ I+ +  +  G         ++  +             + +      ++ Y 
Sbjct: 270 VDLYGNIQTINPKGIELTGYTL-----HQMEKIPFPYMFREAEQAEEYMWKSLSGDSVYY 324

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           + TL   +     V +++  +PI   + +  G   + I          +     L K   
Sbjct: 325 EATLIRKDN--QPVYVEVTQMPI-IVHGQIKG--SYVIAKDVTDRKKAQQQLLDLQKDLK 379

Query: 206 HLHEIKKGHS--SVEKEKYDIFSQQSPPPHLRMK----NKVSSLTEYYAHKDDVLKTEKY 259
                + G     V+ +K  I +         M     + V    E +  +    + ++Y
Sbjct: 380 RTLSQQDGAIFKFVKNDKGYIHTMCEGKMVREMGYEEIDVVGKTLEEFLPESYAKENKRY 439

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
                    +  +   +            +       +     +   +         + E
Sbjct: 440 YEKAWAGEKVSYEVLLNDFAYYTKLIPHIYKG--EVQEVIGSIVDITDLHEAREKLAKSE 497

Query: 320 NLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIE-IAGGLSTLLDAPKLSD 377
           ++    +         +   GNL  AN     +        +     GL   +  P  + 
Sbjct: 498 SMYRSVLSTMSEGVVFHDLEGNLIAANAYAAKILNVPYDQMLSVNPFGLDWEIIHPDGTP 557

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
             A++ +   R   T       +  I  N +    ++        +            + 
Sbjct: 558 -FALEDIPSVRCLHTKEPVRNTVMGIYLNEKKLTWLSVNAEPL-QESKYYKGVVVTFYDI 615

Query: 438 VDTRINKRKMEIEVMQL 454
              +  ++ +     Q+
Sbjct: 616 TKQQEQEQDLLHSNQQM 632


>gi|284167284|ref|YP_003405562.1| PAS/PAC sensor signal transduction histidine kinase [Haloterrigena
           turkmenica DSM 5511]
 gi|284016939|gb|ADB62889.1| PAS/PAC sensor signal transduction histidine kinase [Haloterrigena
           turkmenica DSM 5511]
          Length = 883

 Score =  341 bits (875), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 102/739 (13%), Positives = 248/739 (33%), Gaps = 43/739 (5%)

Query: 89  IDAH-GYLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKRQNTWYGK 146
           +D   G   ++++   +  G    + + + + D+ ++I   +      + L+ +      
Sbjct: 167 VDPETGRYLDVNDTACERRGYSREEFLDLTVMDLETEIPDQEAWRSFVEELRAEGQLTFD 226

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                 +GT   V ++ + +     ++E+       I        +     +    +   
Sbjct: 227 GHHRRKDGTTYPVEVNTSYV---DLDKEYV----LAIARDVTKRREYERYLEDAKSQLEA 279

Query: 207 LHEIKKGHSSVEKEKYD------IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
             E     +       D       F++            V       A  +D  K  +  
Sbjct: 280 ATEAGAVGTWEWHIPEDEMVVGTSFARTFGIEPEVASEGVPLDQFIEAIHEDDRKRVEVA 339

Query: 261 LLTSEESSLPEQEDFH--TINLNQYTKKQYFG---TLQNNSKESFEYLSHRNHPSLSAYF 315
           +  + E+    +E++     + N                  +                  
Sbjct: 340 IEEAVETCGDYEEEYRVWDADDNLRWVVARGHVECDDGEPVRFPGALTDITKRKRAELKL 399

Query: 316 DEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
            +         +  P+   V    G +  AN     +      D   +       +   +
Sbjct: 400 QQNNEQLETLFEVLPVGVVVAEADGQIIQANDIAHEIWGGDVFDAESVEEYEQYPVWDAE 459

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
             +      + L R           ++ I+        +        ++  E        
Sbjct: 460 SGERVQPDEMTLARVVNGEEVLDPDIYEIEAVDGERRVIRLEGMPVRDEHGEVTRGVATL 519

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDG-IAIINREGIILSTNRAVSKLFGYPVEDIL 493
            +  D R  +R +E    +  +++E   +G + + +      +    +     Y  ED +
Sbjct: 520 TDITDRREAQRALEESERRYRTLVENFPNGAVGLFDDNLRYTAVGGQLFDRLDYDPEDRI 579

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553
              FT     +    +  +    L      T E    G       L +R    ++     
Sbjct: 580 GYRFTELHTPDLVEELEPHFRAAL-DGEASTFEIEYQGRYLHAHTLPVRDADDEVYAG-- 636

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
             L + D++E ++ +       ++ E+ +     F    SH+++ PL  +  + + +  +
Sbjct: 637 -MLVIRDVTERREYE-------RMLEESNDRLEQFAYAASHDLQEPLRMVSSYLQ-LLER 687

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
           R+    +    E+  +     + + ++++ LL  S++E+      FE VSLD+ ++E   
Sbjct: 688 RYDDDLDEDGQEFLEFAVDGADRMREMIDGLLKYSRVETRGDP--FETVSLDDVLTEVCD 745

Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG-GQIIISTTHT 732
            +Q+   E    I T    ++PR+  D   ++Q+  N+L NAI ++     +I I     
Sbjct: 746 DLQVMIQESNAEITTE---DLPRVEGDHGQLRQVFQNLLDNAIEYSGDDPPRIYIDAE-R 801

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
             ++ ++ V D GVG+   + ++  + F ++    +    GTG+GL L + +++ + G  
Sbjct: 802 DGDQWLVSVEDNGVGIDPEDTDRVFEVFQRLHA--RGEHAGTGIGLALVERIIERHGGDV 859

Query: 793 YIFSTPAKGTLIEIIFPLY 811
           ++ S P +G+      P+ 
Sbjct: 860 WVESDPGQGSTFSFTLPVA 878



 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 57/519 (10%), Positives = 140/519 (26%), Gaps = 31/519 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + +DA G    +++ +    G    +++G     V D   +                 G
Sbjct: 36  IYQLDAEGRFVAVNDAIVSLTGYAREELLGKHASTVIDDEDVSRIQREIYQRFTDGDREG 95

Query: 146 KTT---LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK--RL 200
           +         +G  +   ++L  L     +  F G    G+V             +   L
Sbjct: 96  EPLEFTARMADGETIPCELELHLLV---EDGTFQGT--IGVVRDIADRKQTEQEFREHEL 150

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEK 258
           +   + L+        V+ E              R   + +   LT      +   +   
Sbjct: 151 ELFRTLLNHSNDSVLVVDPETGRYLDVNDTACERRGYSREEFLDLTVMDLETEIPDQEAW 210

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK---ESFEYLSHRNHPSLSAYF 315
              +    +      D H    +  T      T   +                     Y 
Sbjct: 211 RSFVEELRAEGQLTFDGHHRRKDGTTYPVEVNTSYVDLDKEYVLAIARDVTKRREYERYL 270

Query: 316 DEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
           ++ ++      +   +  + +      +     SF      +     E            
Sbjct: 271 EDAKSQLEAATEAGAVGTWEWHIPEDEMVVGT-SFARTFGIEPEVASEGVP--LDQFIEA 327

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
              D+     V +  +  TC           W+ +++L              E +   G 
Sbjct: 328 IHEDDRKRVEVAIEEAVETCGDYEEEYRV--WDADDNLRWVVARGHVECDDGEPVRFPGA 385

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG------Y 487
             +    +  + K++    QL ++ E    G+ +   +G I+  N    +++G       
Sbjct: 386 LTDITKRKRAELKLQQNNEQLETLFEVLPVGVVVAEADGQIIQANDIAHEIWGGDVFDAE 445

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE-KITLGSTKEEKLLSLRIIIK 546
            VE+  + P                L  +++ +     +         E +++ L  +  
Sbjct: 446 SVEEYEQYPVWDAESGERVQPDEMTLARVVNGEEVLDPDIYEIEAVDGERRVIRLEGMPV 505

Query: 547 KLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
           +           T+ DI++ ++ +  L  +++       
Sbjct: 506 RDEHGEVTRGVATLTDITDRREAQRALEESERRYRTLVE 544



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 53/136 (38%), Gaps = 3/136 (2%)

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
           E  V +  +++    DGI  ++ EG  ++ N A+  L GY  E++L K  +  ++    S
Sbjct: 19  ERTVDRYSTLVNMVDDGIYQLDAEGRFVAVNDAIVSLTGYAREELLGKHASTVIDDEDVS 78

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEW 564
            +   + +  +   R+           + + +   + +  L            + DI++ 
Sbjct: 79  RIQREIYQRFTDGDREGEPLEFTARMADGETIPCELELHLLVEDGTFQGTIGVVRDIADR 138

Query: 565 KQEKNKLSHAKKIAEK 580
           KQ + +    +    +
Sbjct: 139 KQTEQEFREHELELFR 154


>gi|220907212|ref|YP_002482523.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219863823|gb|ACL44162.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 1330

 Score =  341 bits (875), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 134/782 (17%), Positives = 269/782 (34%), Gaps = 76/782 (9%)

Query: 85   FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144
            F   +   G L E +    +        ++G    D         +  +   L++  T  
Sbjct: 431  FVGVMTPDGILIEANRTALEAAALRPADVLGKPFED---TYWWSYSPELQTQLRQAITRA 487

Query: 145  --GKTTLWP---IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR-ALGK 198
              G+   +        +  + ID    PI+            GI            AL +
Sbjct: 488  AQGEMVRYDAIVRVREDQLITIDFTLGPIFDEAGRVKYLIPSGI--DITERKQAEIALQQ 545

Query: 199  RLDKKFSHLHEIKKGHSSV----------EKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA 248
               +    L EI+  + S            +                 ++   ++ +   
Sbjct: 546  SQSQVQRQLAEIETIYQSAPIGLNILDTDLRFVRINQRLADMNGFSVEEHLGKTIRDLLP 605

Query: 249  HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLN---QYTKKQYFGTLQNNSKESFEYL-- 303
               D  +    P+L + E  L  +    T       Q   + +    Q++       +  
Sbjct: 606  DLADTAEALLRPILATGEPLLNVEIRGETPAQPGVQQIWLESFLPLKQDDRIIGISTVCE 665

Query: 304  SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS----------HGNLFYANPSFLLLTK 353
                           E       +     F V                   NP+F   T 
Sbjct: 666  EITERKQAEEALRRSEERYRTLFETMEDGFCVIEILFDANQTPIDYRFLEINPAFEQQTG 725

Query: 354  YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
                  +  A G +     P L D        +  +    +        +         +
Sbjct: 726  ------LHQAVGKTARQLIPNLEDFWFETYGRVALT-GEPLRFENGSAVM----NRWFEV 774

Query: 414  TFIPFEKANQFPENMPQNGIEPE---DVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470
               P  +       +    I      + + +  +  +     +L   + +   G      
Sbjct: 775  YAFPVGQPEHHKVALLFKEISERKRLEAERQQAEIALRENEDRLRMAIASAQLGTW---- 830

Query: 471  EGIILS----TNRAVSKLFGY-PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
            +  I++     +     +FG  P  +I  + F   +       +   +   L+     + 
Sbjct: 831  DWNIVTGKLKWDTGCKAMFGLGPDAEINMETFFAGVHPQDREQLKAMVQSRLNPASGGSF 890

Query: 526  EKITLGSTKEEKL-LSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSH------- 573
            +        ++K+   LR   +    ++     +S T+ DI++ KQ +            
Sbjct: 891  DTEYRTIGLQDKVERWLRSKGQAYYDANGNPLRFSGTVLDITQQKQAEAHREQLLQQEQA 950

Query: 574  AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
            A++ AE+ +  K +FLA +SHE+RTPL  I+G+S+++++     +   +  +    I+R+
Sbjct: 951  AREAAERANRIKDEFLAVLSHELRTPLNPILGWSKLLQS---PQISAQKLQQGLATIERN 1007

Query: 634  GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693
                + +++DLLD S+I  G+++L+   ++L E +  A+  V+L A  K I +     + 
Sbjct: 1008 AKQQVQLIDDLLDTSRIIRGQLSLNLAVINLSEPILAALETVRLSAETKEIKLEVKLGSW 1067

Query: 694  IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753
            + +I  D+  ++Q+  N+LSNAI FTP GG+I +  +        ++VRDTG G+    L
Sbjct: 1068 LGQIRGDVGRLQQVVWNLLSNAIKFTPPGGRITVRLSQVDR-WAQIQVRDTGKGIQPQFL 1126

Query: 754  EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFPLYD 812
                + F Q  +S      G GLGL +A+ +V+A+ G     S    +G    ++ PL  
Sbjct: 1127 PHVFELFRQEDSSTTRSFGGLGLGLAIARQVVEAHGGTIMAASQGEGQGATFTVLLPLIP 1186

Query: 813  TS 814
             +
Sbjct: 1187 AA 1188



 Score =  147 bits (370), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 68/561 (12%), Positives = 150/561 (26%), Gaps = 62/561 (11%)

Query: 54  FTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM 113
             +    S  + + L +E  F FD    ++     +   GY K I+    +T+G  A ++
Sbjct: 2   TAEGPFTSPVHQSSL-AEEAFFFD---LSLDLLAVVGLDGYFKRINPMFSQTLGYSATEL 57

Query: 114 IGMRLCDVSDILHIDPNNHIGDLLKRQN-TWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172
           +     D              + LK    T   +      EG   Y  +   A P   R 
Sbjct: 58  LTSPFLDFVHPDDRAATLAEMEQLKGGTPTLAFENRYLTREGD--YRWLSWTASPQLDR- 114

Query: 173 REFSGFRGFGIVHVNRVDNDPRALGKRL-DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231
                   + +              +   ++    L     G      +  ++F      
Sbjct: 115 -----AVIYCVARDVTQQKQTEIALRVSEERWQLALRGSNDGIWDWNVQTNEVFFSARWK 169

Query: 232 PHLRMKNKVSS----LTEYYAHKDDVL--KTEKYPLLTSEESSLPEQEDFHTINLNQYTK 285
             L  +    S          H DD+             +      +      +      
Sbjct: 170 TMLGYEEDEISHHLEEWAKRVHPDDLAWVMQAIQDHFAQKTPFYVAEHRVQCKDGGYKWI 229

Query: 286 KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV------------------- 326
                 + +   +    +      +     +       ET+                   
Sbjct: 230 LDRGQAIWDQDGKVLRMVGSHTDVTERKTLEAALRTANETLEQRVAQRTAELEQINRSLQ 289

Query: 327 ----------DKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
                     +  P  F +Y     + + N + L L+     D +          D    
Sbjct: 290 ASELKFRTAIEHIPDVFVIYDAHRRIQFVNRAGLALSGGSLPDFLGRR-------DEEIF 342

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
                   + L +             TI         +        +   E     GI  
Sbjct: 343 PVEVTQTYLPLLQQAVATKRYQTGECTIALPNREPYTIVVQYVPLLDGNGEIQQIFGISH 402

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
           +    +  +        Q+  IL++    + ++  +GI++  NR   +       D+L K
Sbjct: 403 DITRRKQAEDATRRSEQQIRRILDSLFSFVGVMTPDGILIEANRTALEAAALRPADVLGK 462

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLR-QTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554
           PF      +    +   L + ++   + + +    +   +E++L+++   +  +   +  
Sbjct: 463 PFEDTYWWSYSPELQTQLRQAITRAAQGEMVRYDAIVRVREDQLITIDFTLGPIFDEAGR 522

Query: 555 SLTM----HDISEWKQEKNKL 571
              +     DI+E KQ +  L
Sbjct: 523 VKYLIPSGIDITERKQAEIAL 543



 Score =  112 bits (280), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 42/429 (9%), Positives = 101/429 (23%), Gaps = 37/429 (8%)

Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254
                 +  F  L         ++     I    S          ++S    + H DD  
Sbjct: 13  QSSLAEEAFFFDLSLDLLAVVGLDGYFKRINPMFSQTLGYSATELLTSPFLDFVHPDDRA 72

Query: 255 KT-EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
            T  +   L     +L  +  + T   +            + +                 
Sbjct: 73  ATLAEMEQLKGGTPTLAFENRYLTREGDYRWLSWTASPQLDRAVIYCVARDVTQQKQTEI 132

Query: 314 YFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                E      +       + ++      + +  +  +  Y+  +              
Sbjct: 133 ALRVSEERWQLALRGSNDGIWDWNVQTNEVFFSARWKTMLGYEEDEISHHLEE----WAK 188

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
               D+ A     +              H +Q        +        +Q  + +   G
Sbjct: 189 RVHPDDLAWVMQAIQDHFAQKTPFYVAEHRVQCKDGGYKWILDRGQAIWDQDGKVLRMVG 248

Query: 433 IEPEDVDTRINKRKME-------------------------IEVMQLCSILEATSDGIAI 467
              +  + +  +  +                             ++  + +E   D   I
Sbjct: 249 SHTDVTERKTLEAALRTANETLEQRVAQRTAELEQINRSLQASELKFRTAIEHIPDVFVI 308

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
            +    I   NRA   L G  + D L +                 L + ++    QT E 
Sbjct: 309 YDAHRRIQFVNRAGLALSGGSLPDFLGRRDEEIFPVEVTQTYLPLLQQAVATKRYQTGEC 368

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
                    +  ++ +    L   +          HDI+  KQ ++    +++   +   
Sbjct: 369 TIAL--PNREPYTIVVQYVPLLDGNGEIQQIFGISHDITRRKQAEDATRRSEQQIRRILD 426

Query: 584 HKSDFLARV 592
               F+  +
Sbjct: 427 SLFSFVGVM 435


>gi|297616302|ref|YP_003701461.1| multi-sensor signal transduction histidine kinase [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297144139|gb|ADI00896.1| multi-sensor signal transduction histidine kinase [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 589

 Score =  341 bits (875), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 88/420 (20%), Positives = 174/420 (41%), Gaps = 32/420 (7%)

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459
           +  I            I    +++  +         E +D  +    +  E  ++ SIL 
Sbjct: 198 MSRITREMAKGNFDQRIEVTTSDEVGQLAQDFNYLAESLDATVT--ALFREKSKIESILA 255

Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL 519
             ++G+  ++ +G ++  N A+S+      EDI+ +P +        S +      +   
Sbjct: 256 HMAEGVLAVDGQGQVILANTAISRTLAVKPEDIINRPLSEL----PFSGIPEVFASVTDS 311

Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNKLSHAK 575
              ++ E              + I +  L       S     + DI++ K  +       
Sbjct: 312 GEPRSAELDL-----NGGKTCVLIHVAPLTNGAGKISGAVGVLQDITDIKNLEVW----- 361

Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
                    + D +A VSHE+RTPLT+I GF E I +             Y   I +   
Sbjct: 362 ---------RRDLVANVSHELRTPLTSIRGFIEAILDGTIS--DPEAQRHYLKVIHQETV 410

Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695
            +  ++ +LLD++++E+GK+     P+ + E VS  +  +     + +I ++   + ++P
Sbjct: 411 RLTRLIRELLDLAQMEAGKIVWELHPIEVSELVSRVLFKLGPQLEQHQISVKVDISQSLP 470

Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755
            +LA+   ++Q+  N++ NAI ++P G  + +    + N  V + V D G G+   +L  
Sbjct: 471 LMLANEDRMEQVLTNLVENAIRYSPPGKTVTVKAG-SDNGLVQIEVSDEGPGIPEEDLPY 529

Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
               F ++  S+     GTGLGL + K +V+A+ GK  + S P +G+      P     +
Sbjct: 530 IWDRFHRVEKSRSRSLGGTGLGLAIVKQIVEAHGGKVGVHSQPGQGSTFFFSIPAVPAEN 589


>gi|317471229|ref|ZP_07930594.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
 gi|316901276|gb|EFV23225.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
          Length = 1090

 Score =  341 bits (875), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 113/534 (21%), Positives = 210/534 (39%), Gaps = 44/534 (8%)

Query: 318 GENLTPETVDKCPIPFFVYSHG---NLFYANPSFLLLTKYKSVDDIEIAGG--LSTLLDA 372
             +      +  P    + S          N   + L KY   D  +   G  +  L+  
Sbjct: 292 QADYIGHLYNAVPEGIALISVDKPYRFLQLNRQGMQLLKYPEGDVEDTVLGEPIENLIHP 351

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
                   +  +    +D        R+            ++ I     ++  E +    
Sbjct: 352 DDYDRLVKM--IETADTDGRKSTFEFRVQR---AGGEYFWVSGILERTFDENGEPV-FVA 405

Query: 433 IEPEDVDTRINKRKMEIEVMQLC-SILEATSDG---IAIIN---REGIILSTNRAVSKLF 485
              +  + ++ +++ E E++Q   +++ A S+    I  IN        +     +    
Sbjct: 406 AFHDVTEEKLAEQEAEREILQERITLVGAISNAYPVIISINLTEDTLNFIYVKPGLMIGL 465

Query: 486 GYPVEDI-LRKPFTVFLEQNTPSVMN-----HYLTEILSLDLRQTLEKITLGSTKEEKLL 539
           G       L +   + +               YLTE L  +  +           + +  
Sbjct: 466 GQQKSYSRLFQDMALTVHPEYADEFRHRFGTEYLTETLGHEKDEVF-LEVRQKLTDGRYH 524

Query: 540 SLRIIIK----KLPFSSCYSLTMHDISEWKQEKNK-----LSHAKKIAEKESSHKSDFLA 590
            +   I              L     ++ ++ + +     L  A   A   +  K  FL+
Sbjct: 525 WISTQIINVDNPYSNDKLAILISR-RTDEQRYEEEQQRQALQTALDNANAANKAKGQFLS 583

Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650
            +SH+IRTP+ AIIG S +            R +E    I+ SG  +L ++ND+LD+SKI
Sbjct: 584 NMSHDIRTPMNAIIGMSAIASAHLD---DRERIMECLGKINLSGKHLLSLINDILDMSKI 640

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF-ANNIPRILADLRSVKQIAL 709
           ESGK++L  EP +L E +++ + L++  A+ +RI ++    +     ++ D   ++Q+ +
Sbjct: 641 ESGKLSLRKEPFNLAELITDTVELIRPQADSRRIRVKVRLRSLKNENVIGDPLRIRQVCI 700

Query: 710 NILSNAIHFTPSGGQIIISTTHTSN-----EEVILRVRDTGVGMTNYELEKAMKPFGQIP 764
           NILSNA+ +TP GG+I I      +     +  I    DTG+GM    L+K   PF +  
Sbjct: 701 NILSNAVKYTPEGGKIDIQVRQEDSVRREYQNFIFCCSDTGIGMDRQFLKKLFHPFERAS 760

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
           +S   +  GTGLG+ + K ++D   G   + S+P KG++  +  PL       D
Sbjct: 761 DSTSSKMTGTGLGMAITKNIIDLMSGDIQVESSPGKGSVFTVTLPLKLQDVSQD 814


>gi|189346303|ref|YP_001942832.1| multi-sensor signal transduction histidine kinase [Chlorobium
           limicola DSM 245]
 gi|189340450|gb|ACD89853.1| multi-sensor signal transduction histidine kinase [Chlorobium
           limicola DSM 245]
          Length = 590

 Score =  341 bits (875), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 82/397 (20%), Positives = 177/397 (44%), Gaps = 29/397 (7%)

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII 474
            IP  + ++  +         +++  +      + +     ++     + I + N  G I
Sbjct: 217 VIPVHRDDEIGKLARVINFMSDEIKKK------QRQEEWYRAVFSGIREAILVTNAAGEI 270

Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
           +  N A S++F      ++ +P        +   +   +  +         E+++L ++K
Sbjct: 271 VLVNPAASRMFRIDGAMLMFRPIRKL----SDRRLQEIIDGVHENKTALLKEEVSLATSK 326

Query: 535 EEKLLSLR-IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
             ++L +  + + K   S       +DI+  +  +                + DF++ VS
Sbjct: 327 GTRILQISSMPVMKNSRSDGTVFVFNDITRLRNLE--------------RIRRDFVSSVS 372

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HE+RTPLT+I G++E +               +   I +    +  +VND+LD+S+IESG
Sbjct: 373 HELRTPLTSIKGYTETLLEGAMH--DPEHATAFLQIILKESEQLTALVNDVLDLSRIESG 430

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713
           K+  HF PV L   + + + ++     +K+I +   + ++IP + AD   ++ +  N+L 
Sbjct: 431 KIEYHFAPVDLCRVIEKTVEMLTPAIEKKQIRLERHYQDDIPEVTADAGYLEIVVRNLLD 490

Query: 714 NAIHFTPS-GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           NA+ +     G++ IS    +  +V + + D G+G+   +L++  + F ++  ++     
Sbjct: 491 NAVKYVDDRNGRVRISV-FRTGMDVRMEIEDNGIGIAPADLDRIFERFYRVDKARSRTLG 549

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GTGLGL + K +V  + G   + S   +G++  I  P
Sbjct: 550 GTGLGLAIVKHIVIGHKGHIEVRSRINQGSVFSITLP 586


>gi|261253472|ref|ZP_05946045.1| multi-sensor hybrid histidine kinase [Vibrio orientalis CIP 102891]
 gi|260936863|gb|EEX92852.1| multi-sensor hybrid histidine kinase [Vibrio orientalis CIP 102891]
          Length = 1037

 Score =  341 bits (875), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 100/413 (24%), Positives = 174/413 (42%), Gaps = 27/413 (6%)

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM--------QLCSILEATSDGIAIINR 470
             A    + + +       +     + K++ +          +L +IL+  +DGI  IN 
Sbjct: 329 TIAATINQLLQRVHTNTISIQRLNEEVKLKQQSEVSQKLVSQKLEAILDTAADGIITIND 388

Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT------ 524
           +G ILS N+A  ++FGY   + +  P    + +   S+   ++    +    +       
Sbjct: 389 KGKILSFNQAAQRMFGYLETEAIGMPIEKLMPKKYASMHQVFIDRYRATGRSKIIGVKTK 448

Query: 525 ---LEKITLGSTKEEKLLSLRIIIKKLPFSSCYS--LTMHDISEWKQEKNKLSHAKKIAE 579
              L +      K  +L  + + I ++  +        + DIS+ KQ +N L  AK+ AE
Sbjct: 449 DGRLGREFQAINKAGELFPILLSIAQVETNDGVIYSGLVKDISQQKQAENALIAAKEEAE 508

Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639
           + +  KS+FLA +SHEIRTP+  IIG  ++          +  +  Y      S   +L 
Sbjct: 509 QAARSKSEFLAVMSHEIRTPMNGIIGMLDL--LLENNLNTSQSHQAYLA--HTSALSLLG 564

Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS-FANNIPRIL 698
           ++ND+LD SKI++ K+ L  +  +L   + +    +        + I           IL
Sbjct: 565 LLNDILDFSKIDADKLELERQHFNLRHMLGDFAEQMAASLTNPNVEIILDMVQVEHSMIL 624

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVIL--RVRDTGVGMTNYELEK 755
           AD   ++QI  N++SNA+ FT  G   I +           L   ++D+G+G+    L  
Sbjct: 625 ADSTRIRQIFSNLVSNALKFTEQGEVVITVRLEENDENTWQLNASIKDSGIGIPQDRLNS 684

Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
               F Q+  S   R  GTGLGL + K +  A  G   + S   KG+      
Sbjct: 685 LFDKFSQVDASTTRRYGGTGLGLAIVKRLCQAMKGSVTVSSEAGKGSEFSFHI 737


>gi|162453233|ref|YP_001615600.1| hypothetical protein sce4957 [Sorangium cellulosum 'So ce 56']
 gi|161163815|emb|CAN95120.1| torS [Sorangium cellulosum 'So ce 56']
          Length = 669

 Score =  341 bits (875), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 111/544 (20%), Positives = 206/544 (37%), Gaps = 51/544 (9%)

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTK 353
                    +    P   +     ++     +D  P     V  HG + + N     +  
Sbjct: 4   EISSVERLSAPEQAPHGPSARQLDDSTFRMLIDAAPDAMVVVDEHGRIVFVNVQTERMFG 63

Query: 354 YKSVDDIEIAGGL--------------STLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399
           Y     I  A  +              ST + AP+     +   +   R D +       
Sbjct: 64  YTRGGLIGQAIEILLPERFQRSHVANRSTFIAAPRARPMGSGLELFGRRRDGSEFPVEIS 123

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459
           L  +                           +    +  D +  +   +     L S +E
Sbjct: 124 LSPLATEGGT-------------------LFSSAIRDISDRKRLEAVAQRTSDLLRSAVE 164

Query: 460 ATSDGIAIINREGIILSTNRAVSKLFG---------YPVEDILRKPFTVFLEQNTPSVMN 510
           +     A+ + +  +   N       G            ++I+ +     L         
Sbjct: 165 SFQGAFAVFDAQDRLALCNSVYRHWLGARVSGPMIGRSYDEIVGESLAAGLFALGGEPPA 224

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570
            +   +L+       +      T + + L      ++         T+ D++     + +
Sbjct: 225 AFRERMLAYHAEP--DGTLDLCTSDGRSLRAT---ERRTAEGGTVCTLWDMTGDVHREEE 279

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           L  A+ IAE  SS KS+FLA +SHE+RTPL AI+GF++++   R  PL + R  E   ++
Sbjct: 280 LRKARGIAEAASSAKSEFLASMSHELRTPLNAILGFAQLLHRDRKTPLTD-RQKERIEHV 338

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS- 689
            + G  +L +++D+LD+S+IE+G++ +  EPV++ E + E  + +   A    I I  + 
Sbjct: 339 LKGGEHLLKLIDDILDLSRIEAGRVTVSIEPVNVPEVLIEVKTTLDPMAQRAGIEIALAP 398

Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749
               +P+I AD     QI +N  SNAI +   GG+  I+ +   +  V + V D G+G+ 
Sbjct: 399 LPAELPKITADRTRFAQILMNYGSNAIKYGRRGGRATIAVSMPEDGVVKICVIDNGIGIP 458

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             +  K  +PF +    +    EGTG+GL + K + +   G     S P +G+   I  P
Sbjct: 459 QEQHAKIFQPFQRA-GQETGPIEGTGIGLAITKRLAELMGGGVGFASIPGEGSEFWIELP 517

Query: 810 LYDT 813
            +  
Sbjct: 518 AHQE 521



 Score = 47.7 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 23/299 (7%), Positives = 68/299 (22%), Gaps = 18/299 (6%)

Query: 45  CHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPK 104
            H+       +   Q     +     ++TF              +D HG +  ++ +  +
Sbjct: 2   THEISSVERLSAPEQAPHGPSARQLDDSTFRMLIDAAPDAMV-VVDEHGRIVFVNVQTER 60

Query: 105 TIGNYAFKMIGMRLCDVSDILHIDPNNH----IGDLLKRQNTWYGKTTL-WPIEGTNLYV 159
             G     +IG  +  +        +           + +    G        +G+    
Sbjct: 61  MFGYTRGGLIGQAIEILLPERFQRSHVANRSTFIAAPRARPMGSGLELFGRRRDGS--EF 118

Query: 160 PIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEK 219
           P++++  P+ +             +          A+ +R         E  +G  +V  
Sbjct: 119 PVEISLSPLATEGGTL----FSSAIRDISDRKRLEAVAQRTSDLLRSAVESFQGAFAVFD 174

Query: 220 EKYDIFSQQS----PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDF 275
            +  +    S              +    +    +                         
Sbjct: 175 AQDRLALCNSVYRHWLGARVSGPMIGRSYDEIVGESLAAGLFALGGEPPAAFRERMLAYH 234

Query: 276 HTINLNQYTKKQYFGTLQNNSKESFEYLSHRN--HPSLSAYFDEGENLTPETVDKCPIP 332
              +           +L+   + + E  +       +   + +E         +     
Sbjct: 235 AEPDGTLDLCTSDGRSLRATERRTAEGGTVCTLWDMTGDVHREEELRKARGIAEAASSA 293


>gi|239905207|ref|YP_002951946.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239795071|dbj|BAH74060.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 853

 Score =  341 bits (875), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 106/632 (16%), Positives = 209/632 (33%), Gaps = 27/632 (4%)

Query: 190 DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK--VSSLTEYY 247
                A       ++  + E       +                L   ++  +  LT   
Sbjct: 80  RKQALAALGESQARYQGVVENAPAAIFIVNAAGRFLDVNPKACRLTGYDRETLLGLTIGE 139

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
               D  +     L   +E +   +      +  +         L          L    
Sbjct: 140 VLDQDSWQAVATYLADFKEGARIAEVSGRRRDGAKRWWSVSAVRLDGER-----VLGFAA 194

Query: 308 HPSLSAYFDEGENLTPETVDKCP-IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
             +     D+  ++  E V     +  F          N ++  LT  + ++D+      
Sbjct: 195 DVTERRRRDDARSVFYELVQNAEHVVVFKDRDLRYVMVNRAYQNLTG-RPLEDVVGKTDP 253

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
                                  +            ++             F    +   
Sbjct: 254 EAFEGLSAPEQIARYVENDRRALNLPRGRTLTSEEEMRGEGGGVRTFLTKKFPVYAEDGR 313

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF- 485
            +    +  E  + +  + ++     +   + E     I   +  G I+  NR     F 
Sbjct: 314 LLGVATMASEITERKKAEARLRESEGRYRLLAELAPVSIMAFDAAGRIIFVNRRHLDTFA 373

Query: 486 --GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK-LLSLR 542
                 +  L +  T        + +   L  +L               T      ++LR
Sbjct: 374 AGRRDRDYFLGRRLTDL-PGIVRAGIAGKLAPLLEGREVDLEAVHFPEFTGGHSGYVNLR 432

Query: 543 IIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
            +       S     L   D++   + +  L+ A+  A+  +  KS+FLA +SHEIRTPL
Sbjct: 433 GVPFLRDDGSLAGGILIREDVTARIEMERTLTAARNEAQAANQTKSEFLANMSHEIRTPL 492

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
             ++G  +++++            EYA+   +S   +  ++ D+LD+S++E+GKM +  E
Sbjct: 493 NGVLGMLQLLRDTPLTA----EQGEYADLAIQSSRRLTRLLADILDLSRVEAGKMAILCE 548

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFT 719
              L  AV+EA+ L +  A +  + +R      +P R+  D    +Q+  N++ NA+ FT
Sbjct: 549 SFELARAVTEAVELFRPSARQAGVELRVYVDAALPARVAGDAARFQQVLANLVGNALKFT 608

Query: 720 PSGGQIIIST-----THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
             G  + +               +  V DTG G+ + +L +  +PF Q         +G 
Sbjct: 609 AKGS-VAVEAYPLPPRREGETRALFSVADTGCGIADADLTRLFEPFVQGSRGYSRNAQGA 667

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           GLGL + K++V+   G   + S   +GT I  
Sbjct: 668 GLGLSICKSLVELMGGNIAVDSEVGRGTTIFF 699



 Score = 83.5 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/381 (9%), Positives = 98/381 (25%), Gaps = 23/381 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK--RQNTW 143
            + ++A G   +++ +  +  G     ++G+ + +V   L  D    +   L   ++   
Sbjct: 105 IFIVNAAGRFLDVNPKACRLTGYDRETLLGLTIGEV---LDQDSWQAVATYLADFKEGAR 161

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             + +    +G   +  +      +        GF     V   R  +D R++   L + 
Sbjct: 162 IAEVSGRRRDGAKRWWSV----SAVRLDGERVLGFA--ADVTERRRRDDARSVFYELVQN 215

Query: 204 FSHLHEIKKG-------HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256
             H+   K         + + +                     +S+  +   + ++  + 
Sbjct: 216 AEHVVVFKDRDLRYVMVNRAYQNLTGRPLEDVVGKTDPEAFEGLSAPEQIARYVENDRRA 275

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
              P   +  S    + +   +      K   +         +             A   
Sbjct: 276 LNLPRGRTLTSEEEMRGEGGGVRTFLTKKFPVYAEDGRLLGVATMASEITERKKAEARLR 335

Query: 317 EGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
           E E       +  P+    +   G + + N   L        D          L D P +
Sbjct: 336 ESEGRYRLLAELAPVSIMAFDAAGRIIFVNRRHLDTFAAGRRD--RDYFLGRRLTDLPGI 393

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
                   +     +   +   A     ++   +S  +                   I  
Sbjct: 394 VRAGIAGKLAPLL-EGREVDLEAVHFP-EFTGGHSGYVNLRGVPFLRDDGSLAGGILIRE 451

Query: 436 EDVDTRINKRKMEIEVMQLCS 456
           +       +R +     +  +
Sbjct: 452 DVTARIEMERTLTAARNEAQA 472


>gi|288959744|ref|YP_003450084.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
 gi|288912052|dbj|BAI73540.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
          Length = 1082

 Score =  341 bits (875), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 135/651 (20%), Positives = 244/651 (37%), Gaps = 30/651 (4%)

Query: 178 FRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK 237
           F G+  V ++        L        + L  +     +         + +      +  
Sbjct: 115 FGGWPAVLLSAAVAGAVRLWLGGVGAITGLAGLALTAVA---APLLAGAMERRAVRRKGG 171

Query: 238 NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297
             V       A     L      L     ++     D                   +   
Sbjct: 172 AGVGKGAGKAAFGFGRLAVFGLALTPLTLAAFLLLPDSRLALRVLEEAALPLIAFTSLGI 231

Query: 298 ESFEYLSHRNHPS--LSAYFDEGENLTPETVDKCPIPFFVYSHG-----NLFYANPSFLL 350
                +  R H      A   E   L     D       V   G      L YAN + + 
Sbjct: 232 GLLGTMLAREHRRFADEAALAESAALFRAVFDSSVDSLLVVRVGADGAFTLRYANTAAVH 291

Query: 351 LTKYKSV---DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
                +            L  LL    ++   A     +     T      R        
Sbjct: 292 ELGALAAGGRPQPVEGQPLDALLPPDLVARVTADLHACIAAGAPT------RFEEQHSQG 345

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
             +           ++    +  +    +       +R + +   +   +    +D I  
Sbjct: 346 GVTRWWEVSQVPIRDESGAIVMLSVGARDITRRHEAERAIRVSEARYRQLARGVTDIIGR 405

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
           I  +G+    + +     G P  +++ +P    +  +        L+ +     R TL+ 
Sbjct: 406 IGLDGVRRFCSESTRDRLGSPPAELVGRPLVERMHPDDRDAAAAGLSRL--TPERPTLKT 463

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
                  + + L     ++ +         Y     DI+  K  + +L  A++ AE  S 
Sbjct: 464 TYRLRHADGRWLWFEAAVRLVTDDWGAPQEYVSVERDITSRKIMEAELQDARQAAEAASR 523

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
            K++FLA +SHE+RTP+ A+IGF+++I  +  GP+GN +Y ++A  I  SG  +L+++N+
Sbjct: 524 GKTEFLASLSHELRTPMNAVIGFADLIAREAEGPVGNAQYRDFAINIRDSGQHLLELINE 583

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703
           +LD  + E+G++ L  EPV LD A + AI L+   A    I I          +  D R 
Sbjct: 584 ILDQVRAEAGQLVLDDEPVDLDAAATFAIRLLTPRAARAGIAIAAKVEPAARHMRGDERR 643

Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
           ++QI LN+LSNA+ +TP+GG + ++T    +  ++L VRDTGVG+   ELE+    + ++
Sbjct: 644 IRQILLNLLSNAVKYTPAGGSVSLTTGPAPDGGLLLEVRDTGVGIPEPELERVPPAYTRV 703

Query: 764 PN-----SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
                  ++  R EG+GLGLPL + +V+ + G   + S   +GT + + FP
Sbjct: 704 DGPDGRRAESRRIEGSGLGLPLTRRLVELHGGTLTLASRVGRGTTVTVHFP 754



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/383 (8%), Positives = 77/383 (20%), Gaps = 19/383 (4%)

Query: 88  NIDAHGYLK--EISEEL-----PKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL-LKR 139
            + A G       +            G     + G  L  +     +          +  
Sbjct: 273 RVGADGAFTLRYANTAAVHELGALAAGGRPQPVEGQPLDALLPPDLVARVTADLHACIAA 332

Query: 140 QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199
                 +      +G       +++ +PI   +         G        ++     + 
Sbjct: 333 GAPTRFEEQ--HSQGGVTRWW-EVSQVPIRDESGAIV-MLSVG-ARDITRRHEAERAIRV 387

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL---RMKNKVSSLTEYYAHKDDV-LK 255
            + ++  L                                   V        H DD    
Sbjct: 388 SEARYRQLARGVTDIIGRIGLDGVRRFCSESTRDRLGSPPAELVGRPLVERMHPDDRDAA 447

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
                 LT E  +L         +      +     + ++     EY+S     +     
Sbjct: 448 AAGLSRLTPERPTLKTTYRLRHADGRWLWFEAAVRLVTDDWGAPQEYVSVERDITSRKIM 507

Query: 316 DEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
           +       +  +        +              +  +  +   E  G +         
Sbjct: 508 EAELQDARQAAEAASRGKTEFLASLSHELRTPMNAVIGFADLIAREAEGPVGNAQYRDFA 567

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
            +       +L   +       A    +  + E         F      P          
Sbjct: 568 INIRDSGQHLLELINEILDQVRAEAGQLVLDDEPVDLDAAATFAIRLLTPRAARAGIAIA 627

Query: 436 EDVDTRINKRKMEIEVMQLCSIL 458
             V+     R M  +  ++  IL
Sbjct: 628 AKVEP--AARHMRGDERRIRQIL 648



 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/340 (7%), Positives = 74/340 (21%), Gaps = 16/340 (4%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
            I   G  +  SE     +G+   +++G  L +       D        L  +      T
Sbjct: 405 RIGLDGVRRFCSESTRDRLGSPPAELVGRPLVERMHPDDRDAAAAGLSRLTPERPTLKTT 464

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                     ++  + A   +         +    +           A  +   +     
Sbjct: 465 YRLRHA-DGRWLWFEAAVRLVTDDWGAPQEY--VSVERDITSRKIMEAELQDARQAAEAA 521

Query: 208 HEIKKGHSSVEKEKYDIFSQQ---SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
              K    +    +                R         +Y     ++  + ++ L   
Sbjct: 522 SRGKTEFLASLSHELRTPMNAVIGFADLIAREAEGPVGNAQYRDFAINIRDSGQHLLELI 581

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN------HPSLSAYFDEG 318
            E     + +   + L+                 +               P+      + 
Sbjct: 582 NEILDQVRAEAGQLVLDDEPVDLDAAATFAIRLLTPRAARAGIAIAAKVEPAARHMRGDE 641

Query: 319 ENLTPETVDKCPIPF-FVYSHGNLFYANPSFLL---LTKYKSVDDIEIAGGLSTLLDAPK 374
             +    ++       +  + G++            L + +          L  +  A  
Sbjct: 642 RRIRQILLNLLSNAVKYTPAGGSVSLTTGPAPDGGLLLEVRDTGVGIPEPELERVPPAYT 701

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
             D    +     R + + +        ++ +       +
Sbjct: 702 RVDGPDGRRAESRRIEGSGLGLPLTRRLVELHGGTLTLAS 741


>gi|320162521|ref|YP_004175746.1| putative two-component sensor histidine kinase [Anaerolinea
            thermophila UNI-1]
 gi|319996375|dbj|BAJ65146.1| putative two-component sensor histidine kinase [Anaerolinea
            thermophila UNI-1]
          Length = 1314

 Score =  341 bits (875), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 148/787 (18%), Positives = 288/787 (36%), Gaps = 67/787 (8%)

Query: 47   DSFEQSNFTDQNQ---ESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELP 103
            +S ++  F+  +Q   E+++    +   N   F    R  R          L  I++   
Sbjct: 577  ESPQEEAFSLTDQDLVEAIAAQLGVAWSNALRFQASERAAR---------RLDLINQASQ 627

Query: 104  KTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDL 163
            +   + + K +   + DV   + ++ +     L++ +           + G +  V   L
Sbjct: 628  RLTFSPSLKTVAEVVLDVCFAM-LNAHKGGVYLVENEGALR----PLALRGVSRAVEKSL 682

Query: 164  AALPIYSRNREFSG-FRGFGIVHVNRVDNDPRAL---GKRLDKKFSHLHEIKKGHSSVEK 219
               P+      FS  +R    V +  V NDPR +   G   ++ +            +  
Sbjct: 683  QEKPLSVHTGLFSTVYRTRRAVFIPDVKNDPRVVFIPGYTGEQIYCFPLISGNRVVGMVD 742

Query: 220  EKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL-KTEKYPLLTSEESSLPEQEDFHTI 278
                   +++        +++ +  E     D  +  +++  +L +  + L    D  T+
Sbjct: 743  VDAIPADEETMTLLHTFFSRIGAALENILLYDQTVHLSQQRAMLLNVSTQLATALDLPTV 802

Query: 279  NLNQYTKKQYFGTLQNN---SKESFEYLSHRNHPSLSAYFD-EGENLTPETVDKCPIPFF 334
                    Q           S     +     HP +    +   +      V   PI   
Sbjct: 803  QAEILVSAQSVLETDVVWLFSISQNIFTLLAGHPPVWKAGNVILQPGISMPVSHNPILSQ 862

Query: 335  VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394
            V     +   N          + + +    GL T++ AP L   + I  ++         
Sbjct: 863  VLEEKKIQIVNRG-------DTPNTLLQNKGLETMVIAPLLVGEDPIGLLVWGSRQPNFF 915

Query: 395  AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
            A   +L  IQ     +                      +  E         ++  E  + 
Sbjct: 916  AEDDKLTLIQGVANQAAIALHRGMLNQRLQRHAEELAEMVEERT------AQLRAEKERT 969

Query: 455  CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
             ++L+A  +GI +++ +G  L  N A   + GY + ++       +L++N  ++   Y  
Sbjct: 970  QAVLDAAGEGIFVLDPQGAFLYCNPAFESITGYSLVELQVGSPWRWLDENEGNLFKTYQN 1029

Query: 515  EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNK 570
              +   L    EK   G  +        + +  +         +  T+ DI+  K     
Sbjct: 1030 REI---LSTRWEKEIHGWRRNGAPFDAILTLTPVHDEDGNVIKHVGTLQDITRLK----- 1081

Query: 571  LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
                     +    KS F++ VSHE+RTPLT+I  ++E +           R   Y   +
Sbjct: 1082 ---------ELDRLKSQFVSNVSHELRTPLTSIKLYAEQL-----PTASAERSARYLAAL 1127

Query: 631  DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
             R    +  +V DLL IS+++ GK  +    + L   V + +   ++ A+ + + +    
Sbjct: 1128 QRETARLEAMVEDLLTISRLDLGKTRIQISALPLAPFVQQIVEDRRMLAHSRGLTLHFQQ 1187

Query: 691  ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH--TSNEEVILRVRDTGVGM 748
              ++P +  D R V QI  N+L+NAI++TP+G  I IS  H       + L + D GVG+
Sbjct: 1188 DKHLPPVAGDERFVMQIVTNLLTNAINYTPAGRNIFISVRHDPQEAGFLRLTIEDEGVGI 1247

Query: 749  TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
               E+    + F +    ++++  GTGLGL + K MV+   GK +I S   KGT   +  
Sbjct: 1248 PPEEMPHLFERFFRGSAGRKLQVPGTGLGLAIVKEMVERLNGKIHIESEVGKGTKAIVWL 1307

Query: 809  PLYDTSH 815
            P++   H
Sbjct: 1308 PVWKDEH 1314



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/132 (12%), Positives = 44/132 (33%), Gaps = 6/132 (4%)

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
           G   ++ +  I   +  ++ L G   ED+L +       +     ++  +  +L      
Sbjct: 3   GFLTLSPDLTITQWSEPLAHLTGKTEEDVLGRNLFDLFPELRTRGVDVAVHHVLETGAPF 62

Query: 524 TLEKIT---LGSTKEEKLLSLRIIIKKL---PFSSCYSLTMHDISEWKQEKNKLSHAKKI 577
            L       +        +     +  L          +T+ D+S+    + +L    ++
Sbjct: 63  FLSHTLHRNILPAANGAAVMQSGQVYPLFKGEEVVGVIMTVQDVSDRAAVEEELRQTIRL 122

Query: 578 AEKESSHKSDFL 589
            + ++  +S  L
Sbjct: 123 LQAQNDIRSALL 134



 Score = 46.9 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 70/232 (30%), Gaps = 12/232 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN-HIGDLLKRQNT-WYGK 146
           +     + + SE L    G     ++G  L D+   L     +  +  +L+     +   
Sbjct: 7   LSPDLTITQWSEPLAHLTGKTEEDVLGRNLFDLFPELRTRGVDVAVHHVLETGAPFFLSH 66

Query: 147 TTLWPIEGTNLYVPIDLAAL--PIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
           T    I        +  +    P+      F G    G++   +  +D  A+ + L +  
Sbjct: 67  TLHRNILPAANGAAVMQSGQVYPL------FKGEEVVGVIMTVQDVSDRAAVEEELRQTI 120

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
             L       S++  E+     Q      L + + V  L   Y ++ + L         S
Sbjct: 121 RLLQAQNDIRSALLDEETGALEQTIVQQALTVSDAV--LVHLYLYEGEQLSPAASASPDS 178

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
           + + LP +       + Q     +             +   +   +L    +
Sbjct: 179 QATVLPPEPPLLVQEVFQQGAPLHILNAFATPGYRPFHPQTQAAVALPLSAE 230


>gi|117925745|ref|YP_866362.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117609501|gb|ABK44956.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1128

 Score =  341 bits (875), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 99/411 (24%), Positives = 179/411 (43%), Gaps = 17/411 (4%)

Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465
             E  +A+   P          +    +    + + +  R++      + SIL+  S G 
Sbjct: 221 QGETGVAVYNSPLPL--AISVAVATLTLLLIALGSALASRRIAHSRRWMNSILQNMSQGF 278

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
            +++ +G IL  N A+          +  +PF   L       +   L ++L     Q +
Sbjct: 279 VMMDLQGRILEANPALLSWVALSPSQVQGEPFQKLLSVQDHQPLQLALQQLL---EGQPV 335

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKE 581
                    +   + +++                  + DI   +     L  A+  AE+ 
Sbjct: 336 RCALSLCCLDAPPIPVQMHGNTHRDEEGQIMGIYAILTDIRAEQAAAKALRDARDAAEQA 395

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
           S  K +FLA +SHEIRTP+ AI+G + +          N R   +   +  +G+ +L I+
Sbjct: 396 SQAKGEFLANMSHEIRTPMNAILGMTHLCLQTDL----NERQRHFLEKVYAAGSALLRIL 451

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-AD 700
           ND+LD SKIE+G + +    + +DE ++    L+ + A+EK+I +      N+P IL  D
Sbjct: 452 NDILDFSKIEAGSLEIEKTSLKMDEVLASLADLMSIRADEKKIELLFHRDANLPEILVGD 511

Query: 701 LRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757
              + Q+ +N++ NA+ FT  G    +I +  +     +V   V+DTG+G+TN ++    
Sbjct: 512 PLRLGQVLINLVGNALKFTEQGEVVVRIEVIQSAERQVKVRFSVKDTGIGLTNEQMSNIF 571

Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           + F Q  +S   R  GTGLGL ++  +V    G   + STP +G+      
Sbjct: 572 QSFKQADSSTTRRYGGTGLGLAISHRLVQLMGGVLKVESTPGQGSCFSFTL 622



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/239 (10%), Positives = 60/239 (25%), Gaps = 12/239 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D  G + E +  L   +     ++ G     +  +    P       L          +
Sbjct: 281 MDLQGRILEANPALLSWVALSPSQVQGEPFQKLLSVQDHQPLQLALQQLLEGQPVRCALS 340

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           L  ++     +P+ +          +  G   + I+   R +       +          
Sbjct: 341 LCCLDAPP--IPVQMHGNTHRDEEGQIMGI--YAILTDIRAEQAAAKALRDARDAAEQAS 396

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL-TSEES 267
           + K    +    +          P   +        +   ++      EK     ++   
Sbjct: 397 QAKGEFLANMSHEIR-------TPMNAILGMTHLCLQTDLNERQRHFLEKVYAAGSALLR 449

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
            L +  DF  I       ++    +        + +S R            +   PE +
Sbjct: 450 ILNDILDFSKIEAGSLEIEKTSLKMDEVLASLADLMSIRADEKKIELLFHRDANLPEIL 508


>gi|296332245|ref|ZP_06874707.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305674947|ref|YP_003866619.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296150559|gb|EFG91446.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305413191|gb|ADM38310.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 589

 Score =  341 bits (875), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 88/364 (24%), Positives = 155/364 (42%), Gaps = 24/364 (6%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            +  E  QL +IL + +DG+  IN +G IL TN    +           +   +    N 
Sbjct: 247 ALNQEKEQLSNILSSMADGVITINIDGTILVTNPPAERFL---QAWYYEQNMNIKEGDNL 303

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
           P          +S +  Q +E    G       + L   +            + D++E +
Sbjct: 304 PPEAKELFQNAVSTEKEQMIEMTLQGR----SWVLLMSPLYAESHVRGAVAVLRDMTEER 359

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           +                  + DF+A VSHE+RTP++ + G+SE I +            E
Sbjct: 360 RL--------------DKLREDFIANVSHELRTPISMLQGYSEAIVDDI--ASSEEDRKE 403

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
            A  I      +  +VNDLLD++++ESG   LH+E V+++E + + I      A EK I 
Sbjct: 404 IAQIIYDESLRMGRLVNDLLDLARMESGHTGLHYEKVNVNEFLEKIIRKFSGVAKEKNIT 463

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +    +      + D   ++Q+  N++ NA+  T S G + I+     +  + + ++D+G
Sbjct: 464 LHQDISLTEEEFMFDEDKMEQVFTNLIDNALRHTSSEGSVSIAVHSVKDG-LKIDIKDSG 522

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
            G+   +L    + F +   ++     GTGLGL + K +V+A+ G   + S   KGT   
Sbjct: 523 SGIPEEDLPFIFERFYKADKARTRGRAGTGLGLAIVKNIVEAHNGSITVHSRMDKGTTFT 582

Query: 806 IIFP 809
              P
Sbjct: 583 FYIP 586


>gi|158523274|ref|YP_001531144.1| PAS/PAC sensor hybrid histidine kinase [Desulfococcus oleovorans
           Hxd3]
 gi|158512100|gb|ABW69067.1| PAS/PAC sensor hybrid histidine kinase [Desulfococcus oleovorans
           Hxd3]
          Length = 1134

 Score =  341 bits (875), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 106/761 (13%), Positives = 225/761 (29%), Gaps = 64/761 (8%)

Query: 82  TVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI-LHIDPNNHIGDLLKRQ 140
                +  D +G     +       G    +++G R  ++          +   +LLK  
Sbjct: 267 PAPVFFK-DRNGLYLGCNPAFEAITGKTEAEILGKRPHEIWPENYSSTYRDKDLELLKTG 325

Query: 141 NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
                +      +GT   V    +A           G    G++             +  
Sbjct: 326 GKQQYEYQYAGPDGTARDVVFYKSA--FQDSAGRVDGL--VGVMLDISERKQAEEALRES 381

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
           +KK+  L +                               +    T       +      
Sbjct: 382 EKKYRVLIDGLPDIVMRFDRDGRHLFVSDNISDLIDLPAARFIGRTHRELDFPEPACRFW 441

Query: 259 YPLLTS---EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
              +      ++    +  F           +       + +        RN  +     
Sbjct: 442 EKAIQGVFDSKTPFETEFRFQGKQGEVVFNWRLIPEQDAHGEIRSVLSFCRNVTAHRKIE 501

Query: 316 DEGENLTPETVDKCPIPFFVYSHG------NLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
            +   L  E +D   +   +               NP+F  +T   + + +    G + L
Sbjct: 502 QDYHTLFREMLDGFALHEIIRDAAGRAIDYRFLAVNPAFERMTGLAAREIV----GKTVL 557

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
              P        +   +       +        ++          F P            
Sbjct: 558 EVLPDTEPYWIERYAGVA-ETGDPVFFEEHARALEK---YFAVTAFRPAPN--------Q 605

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
              I  +  + +  +  +     +  S+L+    G   ++  G +   N ++ K+ GYP 
Sbjct: 606 FASIFQDITERKQAEEALRKNEERYRSVLDNIETGYYEVDLAGNLTFFNPSLCKILGYPS 665

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR-QTLEKITLGSTKEEKLLSLRIIIKKL 548
           ++ +   +  ++   T   +      +       ++ E   +    E+  ++  I + + 
Sbjct: 666 DEAMGMNYKKYMAPETAKKVFQIFNHVFRTGETDKSFEWTLIKKNGEKCHVATSISLMRD 725

Query: 549 PFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKE--SSHKSDFLARVSHEIRTPLTAII 604
              +   +     DI+E KQ + +         +             V+H+    L  I+
Sbjct: 726 TDGNPIGFRGIERDITEHKQAEAEKEKLSAQLIQARKMEAVGRLAGGVAHDFNNMLNVIV 785

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           G +E+  ++      +    E  N I  +     +I   LL  ++    K  +H   + L
Sbjct: 786 GHAELALDE---TRPDDPVCETLNEILGAARRSAEITRQLLAFAR----KQTIHPRVLDL 838

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724
           +  + + + ++Q     + + +  +   ++  +  D   + Q+  N+L NA       G+
Sbjct: 839 NATMGDRLKVLQ-RLLGEDVDMAWTPGPDLWPVRMDPSQIDQVMANLLDNARDAIDGVGR 897

Query: 725 IIIST--------------THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           + I T                   E V L VRDTG GM    L+   +PF          
Sbjct: 898 VEIETDNVRLGPWDCVDCPGLVPGEYVRLSVRDTGRGMDRKTLDNLFEPFFTTKG----V 953

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
           GEGTGLGL     ++  N G  Y  S P +GT   +  P +
Sbjct: 954 GEGTGLGLATVYGIIKQNNGFIYAASRPGQGTAFTVYLPRH 994



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 69/220 (31%), Gaps = 5/220 (2%)

Query: 363 AGGLSTLLDAPKLSDNNAIK-PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
              L  L +         +   V   R     +AA+A    +      SLA++F      
Sbjct: 169 VSALVPLFEPQTGRVAAVLGMDVDARRWQGAVLAAAAWPSVLTAALIASLALSFALAVAR 228

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
            +      +     +  +      + E E   L ++L A    +   +R G+ L  N A 
Sbjct: 229 RRTLNFQTEIARARKQAEQ--AAAETERERRLLQTLLHAIPAPVFFKDRNGLYLGCNPAF 286

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
             + G    +IL K       +N  S       E+L    +Q  E    G     + +  
Sbjct: 287 EAITGKTEAEILGKRPHEIWPENYSSTYRDKDLELLKTGGKQQYEYQYAGPDGTARDVVF 346

Query: 542 RIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAE 579
                +            M DISE KQ +  L  ++K   
Sbjct: 347 YKSAFQDSAGRVDGLVGVMLDISERKQAEEALRESEKKYR 386


>gi|311235101|gb|ADP87955.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris
           RCH1]
          Length = 953

 Score =  341 bits (875), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 116/771 (15%), Positives = 237/771 (30%), Gaps = 63/771 (8%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK 146
           + +D+ G +  +++     +   A  ++G  L  V   +H      +             
Sbjct: 38  FTLDSDGLVVFMNDPFLDLVLRPAADLLGKPLSVVVPAIHA---PLVARAAADILAGTCD 94

Query: 147 TTLWPIEGTNL---------YVPIDLAALPI----------YSRNREFSGFRGFGIV--- 184
             L P+ G               +D    P+             +        F +    
Sbjct: 95  DLLLPVSGQGGTALPVRFRTVHAVDAEGAPVCHAFATHALPRRHDESLRYAELFHLCPVP 154

Query: 185 ---HVNRVDNDPRALGKRL-DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV 240
                           +           E      +    +  I         L    + 
Sbjct: 155 LWQQDVTEAQQAIDTLRTSGVHDLRAYFEAHPHVLAEFARRIRIVDANETASGLFAGCRE 214

Query: 241 SSLTEYYAHKDDVLK--TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE 298
             L      +  + +   E   +L S    L  +     ++  +   +     +      
Sbjct: 215 DLLDPDLFMRLGMRQFVMELLVMLASGADRLSVEAACRALDGGERALQIEARLMPGFGLT 274

Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF--FVYSHG---NLFYANPSFLLLTK 353
               ++     +               V+         +++        +AN +      
Sbjct: 275 GMRVIACGTDITERNRSQAALADFRNLVEAMSDNMIDMLWAKDTECRYIFANRAIRENLL 334

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR---ENS 410
           +   +   + G         +    +      L       +  +      + +       
Sbjct: 335 HSDDE--RVLGRTDLHFAERQRHLGHEHTFGELCIDSDRVVLQTRTSGRFREDGKVQGRY 392

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470
           L +        ++  + +   G   +    +  +  +      L   +EA++D I   + 
Sbjct: 393 LMLDVQKSPLYDRQGKLLGTVGTGRDITLLKAQEDALLRSQQLLKWTVEASTDTIWQYDV 452

Query: 471 -EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
                L  N     L      +          +     ++ H L         +      
Sbjct: 453 VHDRFL-CNNRCPGLLALSDAEDEC-HCRHRADPADAELLLHNLRN--GQGGDKGFSMEL 508

Query: 530 LGSTKEEKLLSLRII--IKKLPFSSCYSLTM---HDISEWKQEKNKLSHAKKIAEKESSH 584
                E     +     + +       +L +    DI+E K+ + +L  A+  AE  +  
Sbjct: 509 RLRDDEGVWHWMYCRGKVVEYDEEGRPTLVVGANTDITERKRFETELRQARDDAEAANKA 568

Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
           KS FLA +SHEIRTPL  ++G  +++++            E  +   +S   +L ++ND+
Sbjct: 569 KSIFLANMSHEIRTPLNGVLGMLQLLEDAPLTS----DQQELLHVASQSSRNLLTVINDI 624

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRS 703
           LD +++ S   +   +P     A+      +   A +K I I T  + N+P +L  D+  
Sbjct: 625 LDFTRLGSVAPSFASDPFDAAGALYTVRDTLATGAKDKDIRIETDISPNVPPLLIGDVTR 684

Query: 704 VKQIALNILSNAIHFTPSGGQIIIST----THTSNEEVI--LRVRDTGVGMTNYELEKAM 757
            +QI  N++ NA+ FT  G  + IS      H+    +   L V D+G+G+    L    
Sbjct: 685 FRQILFNLVGNAVKFTQQG-TVRISLHGLERHSPAGALRMLLMVEDSGIGIPQDMLGNVF 743

Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           +PF Q+  S + R  GTGLGL + +++V    G   I S    GT I    
Sbjct: 744 EPFFQVDGSYRRRYPGTGLGLGIVRSLVHGMGGTIAIDSEEGAGTTIACTL 794



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/372 (10%), Positives = 93/372 (25%), Gaps = 31/372 (8%)

Query: 86  TWNIDAHGYLKEISEELPK-TIGNYAFKMIGMRLCDVS---------DILHIDPNNHIGD 135
            W  D        +  + +  + +   +++G      +                 +    
Sbjct: 313 LWAKDTECRYIFANRAIRENLLHSDDERVLGRTDLHFAERQRHLGHEHTFGELCIDSDRV 372

Query: 136 LLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA 195
           +L+ + +   +     ++G  L + +  +  P+Y R  +  G  G G      +      
Sbjct: 373 VLQTRTSGRFREDG-KVQGRYLMLDVQKS--PLYDRQGKLLGTVGTG--RDITLLKAQED 427

Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL---TEYYAHKDD 252
              R  +      E            +D F   +  P L   +               D 
Sbjct: 428 ALLRSQQLLKWTVEASTDTIWQYDVVHDRFLCNNRCPGLLALSDAEDECHCRHRADPADA 487

Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ-NNSKESFEYLSHRNHPSL 311
            L           +     +          +        ++ +        +      + 
Sbjct: 488 ELLLHNLRNGQGGDKGFSMELRLRDDEGVWHWMYCRGKVVEYDEEGRPTLVVGANTDITE 547

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
              F+       +  +            ++F AN S  + T       +    G+  LL+
Sbjct: 548 RKRFETELRQARDDAEAANKA------KSIFLANMSHEIRTP------LNGVLGMLQLLE 595

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
              L+ +      +  +S R  +     +         + +    PF+ A          
Sbjct: 596 DAPLTSDQQELLHVASQSSRNLLTVINDILDFTRLGSVAPSFASDPFDAAGALYTVRDTL 655

Query: 432 GIEPEDVDTRIN 443
               +D D RI 
Sbjct: 656 ATGAKDKDIRIE 667



 Score = 40.4 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/154 (12%), Positives = 47/154 (30%), Gaps = 16/154 (10%)

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           +L A       ++ +G+++  N     L   P  D+L KP +V +      ++     +I
Sbjct: 29  VLSAIRIPAFTLDSDGLVVFMNDPFLDLVLRPAADLLGKPLSVVVPAIHAPLVARAAADI 88

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW--KQEKNKLSH- 573
           L+      L      S +    L +R        +    +     +    ++    L + 
Sbjct: 89  LAGTCDDLL---LPVSGQGGTALPVRFRTVHAVDAEGAPVCHAFATHALPRRHDESLRYA 145

Query: 574 ----------AKKIAEKESSHKSDFLARVSHEIR 597
                      ++   +             H++R
Sbjct: 146 ELFHLCPVPLWQQDVTEAQQAIDTLRTSGVHDLR 179


>gi|46581448|ref|YP_012256.1| sensory box histidine kinase/response regulator [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|46450870|gb|AAS97516.1| sensory box histidine kinase/response regulator [Desulfovibrio
           vulgaris str. Hildenborough]
          Length = 955

 Score =  341 bits (875), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 116/771 (15%), Positives = 237/771 (30%), Gaps = 63/771 (8%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK 146
           + +D+ G +  +++     +   A  ++G  L  V   +H      +             
Sbjct: 40  FTLDSDGLVVFMNDPFLDLVLRPAADLLGKPLSVVVPAIHA---PLVARAAADILAGTCD 96

Query: 147 TTLWPIEGTNL---------YVPIDLAALPI----------YSRNREFSGFRGFGIV--- 184
             L P+ G               +D    P+             +        F +    
Sbjct: 97  DLLLPVSGQGGTALPVRFRTVHAVDAEGAPVCHAFATHALPRRHDESLRYAELFHLCPVP 156

Query: 185 ---HVNRVDNDPRALGKRL-DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV 240
                           +           E      +    +  I         L    + 
Sbjct: 157 LWQQDVTEAQQAIDTLRTSGVHDLRAYFEAHPHVLAEFARRIRIVDANETASGLFAGCRE 216

Query: 241 SSLTEYYAHKDDVLK--TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE 298
             L      +  + +   E   +L S    L  +     ++  +   +     +      
Sbjct: 217 DLLDPDLFMRLGMRQFVMELLVMLASGADRLSVEAACRALDGGERALQIEARLMPGFGLT 276

Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF--FVYSHG---NLFYANPSFLLLTK 353
               ++     +               V+         +++        +AN +      
Sbjct: 277 GMRVIACGTDITERNRSQAALADFRNLVEAMSDNMIDMLWAKDTECRYIFANRAIRENLL 336

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR---ENS 410
           +   +   + G         +    +      L       +  +      + +       
Sbjct: 337 HSDDE--RVLGRTDLHFAERQRHLGHEHTFGELCIDSDRVVLQTRTSGRFREDGKVQGRY 394

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470
           L +        ++  + +   G   +    +  +  +      L   +EA++D I   + 
Sbjct: 395 LMLDVQKSPLYDRQGKLLGTVGTGRDITLLKAQEDALLRSQQLLKWTVEASTDTIWQYDV 454

Query: 471 -EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
                L  N     L      +          +     ++ H L         +      
Sbjct: 455 VHDRFL-CNNRCPGLLALSDAEDEC-HCRHRADPADAELLLHNLRN--GQGGDKGFSMEL 510

Query: 530 LGSTKEEKLLSLRII--IKKLPFSSCYSLTM---HDISEWKQEKNKLSHAKKIAEKESSH 584
                E     +     + +       +L +    DI+E K+ + +L  A+  AE  +  
Sbjct: 511 RLRDDEGVWHWMYCRGKVVEYDEEGRPTLVVGANTDITERKRFETELRQARDDAEAANKA 570

Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
           KS FLA +SHEIRTPL  ++G  +++++            E  +   +S   +L ++ND+
Sbjct: 571 KSIFLANMSHEIRTPLNGVLGMLQLLEDAPLTS----DQQELLHVASQSSRNLLTVINDI 626

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRS 703
           LD +++ S   +   +P     A+      +   A +K I I T  + N+P +L  D+  
Sbjct: 627 LDFTRLGSVAPSFASDPFDAAGALYTVRDTLATGAKDKDIRIETDISPNVPPLLIGDVTR 686

Query: 704 VKQIALNILSNAIHFTPSGGQIIIST----THTSNEEVI--LRVRDTGVGMTNYELEKAM 757
            +QI  N++ NA+ FT  G  + IS      H+    +   L V D+G+G+    L    
Sbjct: 687 FRQILFNLVGNAVKFTQQG-TVRISLHGLERHSPAGALRMLLMVEDSGIGIPQDMLGNVF 745

Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           +PF Q+  S + R  GTGLGL + +++V    G   I S    GT I    
Sbjct: 746 EPFFQVDGSYRRRYPGTGLGLGIVRSLVHGMGGTIAIDSEEGAGTTIACTL 796



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/372 (10%), Positives = 93/372 (25%), Gaps = 31/372 (8%)

Query: 86  TWNIDAHGYLKEISEELPK-TIGNYAFKMIGMRLCDVS---------DILHIDPNNHIGD 135
            W  D        +  + +  + +   +++G      +                 +    
Sbjct: 315 LWAKDTECRYIFANRAIRENLLHSDDERVLGRTDLHFAERQRHLGHEHTFGELCIDSDRV 374

Query: 136 LLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA 195
           +L+ + +   +     ++G  L + +  +  P+Y R  +  G  G G      +      
Sbjct: 375 VLQTRTSGRFREDG-KVQGRYLMLDVQKS--PLYDRQGKLLGTVGTG--RDITLLKAQED 429

Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL---TEYYAHKDD 252
              R  +      E            +D F   +  P L   +               D 
Sbjct: 430 ALLRSQQLLKWTVEASTDTIWQYDVVHDRFLCNNRCPGLLALSDAEDECHCRHRADPADA 489

Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ-NNSKESFEYLSHRNHPSL 311
            L           +     +          +        ++ +        +      + 
Sbjct: 490 ELLLHNLRNGQGGDKGFSMELRLRDDEGVWHWMYCRGKVVEYDEEGRPTLVVGANTDITE 549

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
              F+       +  +            ++F AN S  + T       +    G+  LL+
Sbjct: 550 RKRFETELRQARDDAEAANKA------KSIFLANMSHEIRTP------LNGVLGMLQLLE 597

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
              L+ +      +  +S R  +     +         + +    PF+ A          
Sbjct: 598 DAPLTSDQQELLHVASQSSRNLLTVINDILDFTRLGSVAPSFASDPFDAAGALYTVRDTL 657

Query: 432 GIEPEDVDTRIN 443
               +D D RI 
Sbjct: 658 ATGAKDKDIRIE 669



 Score = 40.4 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/154 (12%), Positives = 47/154 (30%), Gaps = 16/154 (10%)

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           +L A       ++ +G+++  N     L   P  D+L KP +V +      ++     +I
Sbjct: 31  VLSAIRIPAFTLDSDGLVVFMNDPFLDLVLRPAADLLGKPLSVVVPAIHAPLVARAAADI 90

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW--KQEKNKLSH- 573
           L+      L      S +    L +R        +    +     +    ++    L + 
Sbjct: 91  LAGTCDDLL---LPVSGQGGTALPVRFRTVHAVDAEGAPVCHAFATHALPRRHDESLRYA 147

Query: 574 ----------AKKIAEKESSHKSDFLARVSHEIR 597
                      ++   +             H++R
Sbjct: 148 ELFHLCPVPLWQQDVTEAQQAIDTLRTSGVHDLR 181


>gi|126727740|ref|ZP_01743571.1| sensory box sensor histidine kinase [Rhodobacterales bacterium
            HTCC2150]
 gi|126702996|gb|EBA02098.1| sensory box sensor histidine kinase [Rhodobacterales bacterium
            HTCC2150]
          Length = 1521

 Score =  341 bits (875), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 109/755 (14%), Positives = 246/755 (32%), Gaps = 51/755 (6%)

Query: 86   TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRL-CDVSDILHIDPNNHIG-DLLKRQNTW 143
             + IDA G + E ++   +  G    ++IG  L  +     +  P   +    L  + T 
Sbjct: 784  IFGIDAEGRVNEWNQTAERITGFTKDEVIGENLVAEYITDDYKKPVKEVLDKALAGEQTA 843

Query: 144  YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
              +  L+   G    V + L +      + + +G  G G        N  R    R+   
Sbjct: 844  NYEFPLFTNSGD--RVDVLLNSTTRRDSDGKITGVVGVG--QDITELNKVRVEQDRIAND 899

Query: 204  FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSS--LTEYYAHKDDVLKTEKY 259
             + L +           +  +         +    K++V    L   Y   D     ++ 
Sbjct: 900  LTQLIDTANAPIFGIDAEGRVNEWNQTAERITGFTKDEVIGKNLVAEYITDDYKKPVKEV 959

Query: 260  PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA-----Y 314
                         E     N           T + +S      +                
Sbjct: 960  LDKALAGEQTANYEFPLFTNSGDRVDVLLNSTTRRDSDGKITGVVGVGQDITELNKVRVE 1019

Query: 315  FDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
             D   N   + +D    P F + + G +   N +   +T +   + I        + D  
Sbjct: 1020 QDRIANDLTQLIDTANAPIFGIDAEGRVNEWNQTAERITGFTKDEVIGENLVAEYITDDY 1079

Query: 374  KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
            K         +    +          L T   +R   + +      + +   +     G+
Sbjct: 1080 KKPVKEV---LDKALAGEQTANYEFPLFTNSGDR---VDVLLNFTTRRDSDGKITGVVGV 1133

Query: 434  EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
              +  +    + + +     L  +++  +  I  I+ EG +   N+   ++ G+  ++++
Sbjct: 1134 GQDITELNKVRVEQDRIANDLTQLIDTANAPIFGIDAEGRVNEWNQTAERITGFTKDEVI 1193

Query: 494  RKPF-TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
             K     ++  +    +   L + L+ +     E     ++ +   + L    ++     
Sbjct: 1194 GKNLVAEYITDDFKESVKEVLDKALAGEQTANYEFPLFTNSGDRVDVLLNFTTRRDSDGK 1253

Query: 553  --CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
                     DI+E K+ + ++ H+ K+A        +    V+HE+  PL  I   +   
Sbjct: 1254 ITGVVGVGQDITELKKSQAQVIHSSKLAT-----LGEMATSVAHELNQPLNVIRLAAGNC 1308

Query: 611  KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
            + +      +   +E  + I+        I++ +    +    K +     +++ E +  
Sbjct: 1309 RLRIDP--DSTYLVEKLSRIEEQTARAALIIDHMKMFGR----KTDEKPSNINVHEVIQS 1362

Query: 671  AISLVQLYANEKRILIR-----TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ- 724
               LV        I +R     +S   +   ++     ++Q+ +N+++NA     + G+ 
Sbjct: 1363 TFDLVGEQIRLAGINLREKKRCSSSKEHEIFVIGHEIQLEQVFINLITNARDALQTRGRS 1422

Query: 725  ---IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
               I I     S E + +++ DTG G+    +++   PF           +GTGLGL ++
Sbjct: 1423 LKEITIEI-VESLESIQIKIFDTGGGIPEKVIDQIFHPFFTTK----EVSKGTGLGLSIS 1477

Query: 782  KAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
              ++    G     +   +G    II P      P
Sbjct: 1478 YGIITDMGGSLECCNWE-EGACFSIILPKAKIDEP 1511



 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 59/510 (11%), Positives = 149/510 (29%), Gaps = 25/510 (4%)

Query: 86   TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRL--CDVSDILHIDPNNHIGDLLKRQNTW 143
             + IDA G + E ++   +  G    +++G  L    ++D       + +   L  + T 
Sbjct: 530  IFGIDAEGRVNEWNQMAEQITGFAKDEVMGQDLVGNHITDDYKKSVQDVLDKALNGEQTA 589

Query: 144  YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
              +  L+   G    + + L +      + +  G  G G        N  R   +++  +
Sbjct: 590  NFEFPLFSKTGE--RIDVLLNSTTRRDSDGKIIGVVGVG--QDITELNKVRVEQEQVAIE 645

Query: 204  FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSS--LTEYYAHKDDVLKTEKY 259
             + L             K  +         +    KN+V +      Y   D     +  
Sbjct: 646  LAQLLNTANVPMFGIDAKGCVNEWNDATAEITSLTKNEVLNKNFVGNYITDDYKKSVQDV 705

Query: 260  PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA-----Y 314
                         E        +        T + +S      +                
Sbjct: 706  FDKALNGEQTANFEFPLFSKTGERIDVLLNSTTRRDSDGKIIGVVGVGQDITELNKVRVE 765

Query: 315  FDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
             D   N   + +D    P F + + G +   N +   +T +   + I        + D  
Sbjct: 766  QDRIANDLTQLIDTANAPIFGIDAEGRVNEWNQTAERITGFTKDEVIGENLVAEYITDDY 825

Query: 374  KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
            K         +    +          L T   +R   + +      + +   +     G+
Sbjct: 826  KKPVKEV---LDKALAGEQTANYEFPLFTNSGDR---VDVLLNSTTRRDSDGKITGVVGV 879

Query: 434  EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
              +  +    + + +     L  +++  +  I  I+ EG +   N+   ++ G+  ++++
Sbjct: 880  GQDITELNKVRVEQDRIANDLTQLIDTANAPIFGIDAEGRVNEWNQTAERITGFTKDEVI 939

Query: 494  RKPF-TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
             K     ++  +    +   L + L+ +     E     ++ +   + L    ++     
Sbjct: 940  GKNLVAEYITDDYKKPVKEVLDKALAGEQTANYEFPLFTNSGDRVDVLLNSTTRRDSDGK 999

Query: 553  --CYSLTMHDISEWKQEKNKLSHAKKIAEK 580
                     DI+E  + + +         +
Sbjct: 1000 ITGVVGVGQDITELNKVRVEQDRIANDLTQ 1029



 Score =  103 bits (256), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 34/389 (8%), Positives = 116/389 (29%), Gaps = 19/389 (4%)

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEKYPLL 262
             L ++          +  +         +    K++V        H  D  K     +L
Sbjct: 520 QQLIDLANAPIFGIDAEGRVNEWNQMAEQITGFAKDEVMGQDLVGNHITDDYKKSVQDVL 579

Query: 263 T---SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL----SAYF 315
               + E +   +    +    +        T +++  +    +      +         
Sbjct: 580 DKALNGEQTANFEFPLFSKTGERIDVLLNSTTRRDSDGKIIGVVGVGQDITELNKVRVEQ 639

Query: 316 DEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
           ++      + ++   +P F + + G +   N +   +T     + +      + + D  K
Sbjct: 640 EQVAIELAQLLNTANVPMFGIDAKGCVNEWNDATAEITSLTKNEVLNKNFVGNYITDDYK 699

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
            S  +        ++      A+          E    +      + +   + +   G+ 
Sbjct: 700 KSVQDVFD-----KALNGEQTANFEFPLFSKTGERI-DVLLNSTTRRDSDGKIIGVVGVG 753

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
            +  +    + + +     L  +++  +  I  I+ EG +   N+   ++ G+  ++++ 
Sbjct: 754 QDITELNKVRVEQDRIANDLTQLIDTANAPIFGIDAEGRVNEWNQTAERITGFTKDEVIG 813

Query: 495 KPF-TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS- 552
           +     ++  +    +   L + L+ +     E     ++ +   + L    ++      
Sbjct: 814 ENLVAEYITDDYKKPVKEVLDKALAGEQTANYEFPLFTNSGDRVDVLLNSTTRRDSDGKI 873

Query: 553 -CYSLTMHDISEWKQEKNKLSHAKKIAEK 580
                   DI+E  + + +         +
Sbjct: 874 TGVVGVGQDITELNKVRVEQDRIANDLTQ 902



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 25/224 (11%), Positives = 66/224 (29%), Gaps = 11/224 (4%)

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                  LL    LS    I   +     +     +  +  I+    +            
Sbjct: 431 QDIAKDILLIITFLSATMIISIWLRRWIAKLTFHLAMEIQRIEKQHGS------RSEYMR 484

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL--CSILEATSDGIAIINREGIILSTNR 479
           +     +    +    +  R+  R  E+E        +++  +  I  I+ EG +   N+
Sbjct: 485 SSLVYELRWISVWLAKLHQRVKYRTAELEKSLYDHQQLIDLANAPIFGIDAEGRVNEWNQ 544

Query: 480 AVSKLFGYPVEDILRKPFT-VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
              ++ G+  ++++ +      +  +    +   L + L+ +     E      T E   
Sbjct: 545 MAEQITGFAKDEVMGQDLVGNHITDDYKKSVQDVLDKALNGEQTANFEFPLFSKTGERID 604

Query: 539 LSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEK 580
           + L    ++              DI+E  + + +         +
Sbjct: 605 VLLNSTTRRDSDGKIIGVVGVGQDITELNKVRVEQEQVAIELAQ 648


>gi|37676244|ref|NP_936640.1| hypothetical protein VVA0584 [Vibrio vulnificus YJ016]
 gi|37200785|dbj|BAC96610.1| conserved hypothetical protein [Vibrio vulnificus YJ016]
          Length = 1072

 Score =  341 bits (875), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 104/378 (27%), Positives = 181/378 (47%), Gaps = 15/378 (3%)

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
           +  +    ++       +I++     +AI+N    I   N     ++GY  E+   +   
Sbjct: 149 EIELRTADLKASEELSRTIIDGAPSSVAIVNESLFISLWNSTAQNVYGYSSEEATGENIL 208

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLE---KITLGSTKEEKLLSLR--IIIKKLPFSSC 553
             L  + P  ++H L+  L+L  +  +E        +TKE  ++ +   + I +L  +  
Sbjct: 209 TLLNMSLPDALSHVLSAPLALQNQPDVEGGFFEVETTTKEGHMVPIDLGVSIFELNGACH 268

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
            +L + D++  K  + +L+ AK  AE+    KS FLA +SHEIRTP+ AIIG S +    
Sbjct: 269 AALFLRDVTSRKAVEKELNDAKAKAEEAVEVKSMFLANMSHEIRTPMNAIIGMSHLALKT 328

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
              P    +  +Y + I  S  L+L I+ND+LD SKIE+GK+++      LD+       
Sbjct: 329 DLTP----KQHDYVSKIHSSATLLLGIINDILDFSKIEAGKLSIETTEFYLDDVFHNVSM 384

Query: 674 LVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH- 731
           +    A EK + +        PR +L D   + QI +N+++N++ FT  G +I +S  H 
Sbjct: 385 VTGQKAFEKGLELIFDLPRETPRCLLGDPLRLGQIIINLVNNSVKFTEKG-EITVSVHHI 443

Query: 732 ---TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                  E+  R+ DTG+GMT+ +++     F Q   S   +  GTGLGL + + +V+  
Sbjct: 444 RNVEDLVELEFRISDTGIGMTDKQMKSLFTAFTQADGSTTRKYGGTGLGLSICRRLVELM 503

Query: 789 MGKFYIFSTPAKGTLIEI 806
            G+  + S   KG+    
Sbjct: 504 GGQIRVESEAGKGSHFIF 521


>gi|219846968|ref|YP_002461401.1| multi-sensor signal transduction histidine kinase [Chloroflexus
            aggregans DSM 9485]
 gi|219541227|gb|ACL22965.1| multi-sensor signal transduction histidine kinase [Chloroflexus
            aggregans DSM 9485]
          Length = 2783

 Score =  341 bits (874), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 106/617 (17%), Positives = 214/617 (34%), Gaps = 42/617 (6%)

Query: 223  DIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQ 282
                 +     +      +S     A   D +      L         E E    +   +
Sbjct: 2172 PAAYDEEALAVVFTIASQASQAIQNARLFDQISNLAADLDARVRERTAELEQATQLLSEE 2231

Query: 283  YTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH---- 338
              + +    +        +                  +     +        +       
Sbjct: 2232 KERLEAVNRIALELTTQLDLDLIIQRALALISDSLQVDRGSLMLRDVESGALICRAVLHG 2291

Query: 339  -GNLFYANP--SFLLLTKYKSVDDI---EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
             G +  AN    F   T+  +   +   E         D   + ++     V        
Sbjct: 2292 RGQVQAANVPLRFANNTEGLAGWIMQHQEPVNIRDVTHDPRWVQESGRADTVRSVAGVPL 2351

Query: 393  CIAASARL-------HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
                +A             ++      +  I    A           +    +   +   
Sbjct: 2352 QTGDTAIGVIILSSPQPNYFSDSQMNLLGTIASVIAAAVYNAQLYGFVNDLALRNAVLLE 2411

Query: 446  KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL---- 501
            +   E  +  +I  + ++G+ +++    I   N A  ++     + +L +P         
Sbjct: 2412 EQRAESSKSAAIFRSMTEGVIVLDTTNQITLFNPAAEQMLDIAADLVLGQPLAHLAEVGN 2471

Query: 502  ----EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-CYSL 556
                 +   ++    L  +  +   Q +   ++  T   +++++ I   +   +      
Sbjct: 2472 DDISRRRGQTIYQGILHGLRRMRETQGIFSTSIDLTDPTQVIAVNIAPVRGLDTDYGTVA 2531

Query: 557  TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
             + DI+                 +    K  F++ VSHE+RTPLTAI G+ +V+      
Sbjct: 2532 VLRDITR--------------EIEADKEKRQFISDVSHELRTPLTAIKGYVDVLLLTASL 2577

Query: 617  PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
             L  P  + Y N I  + N +  ++ D+L+ S+ +S K  L F  V +   + E +  ++
Sbjct: 2578 NLT-PDQLSYLNIIKNNTNRLRALIEDILEFSRPDSKK-KLTFTQVDIPTVIEEVVQSLR 2635

Query: 677  LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
            L    K + +R   + ++P ++AD + V QI  N+ SNA+ +T  GG I +         
Sbjct: 2636 LEYERKGMKVRIDTSPSLPPVIADQKRVSQIIFNLFSNAVKYTYEGGSITVRAFVNRANM 2695

Query: 737  VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
            + + V DTGVGM+  +L+K  +PF +  N  +    GTGLGL +AK +V+ + G+ ++ S
Sbjct: 2696 MQIEVEDTGVGMSPEQLKKLFRPFYRADNPLRDIAGGTGLGLSIAKQLVEMHGGEIWVTS 2755

Query: 797  TPAKGTLIEIIFPLYDT 813
               KG+      PL  T
Sbjct: 2756 ELGKGSTFSFAIPLQQT 2772


>gi|217037909|gb|ACJ76426.1| hybrid sensor kinase RscS [Aliivibrio fischeri]
          Length = 943

 Score =  341 bits (874), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 99/382 (25%), Positives = 179/382 (46%), Gaps = 15/382 (3%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +    + E E  +L  + E   D I I++++  +   N++ S L G  +EDI  K     
Sbjct: 264 KRELIRSEKEKTKLALVAEHAHDAIFILDKQSKLTWINQSYSVLSGNTLEDIKGKDLPSV 323

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSL 556
           L+        +  T + SL    ++      + K+  L  + + +  +   +     Y +
Sbjct: 324 LQ-LDKIQHANIFTLLQSLKAGTSVSFELTNNHKDGTLYWIDVSVTPIFKPNGNIMHYVV 382

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
              DI++ K+ +NKL  A   A+  +  KS FLA +SHE+RTPL  I+G +++I++    
Sbjct: 383 VERDITKKKELENKLIKAADKADVSNKAKSTFLATMSHELRTPLNGILGMAQIIESN--- 439

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
            + +    +    +  SG+ +L ++ND+LD SKIE  K+ L+      ++ +    +   
Sbjct: 440 -IKDEEQHKQIKVLLESGDHLLSLLNDILDFSKIEQNKLELNHASFYFNDVIDPIANTYL 498

Query: 677 LYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIII----STTH 731
               +K +        N   I + D   ++QI  N++SNA+ FT  G  I +    + T 
Sbjct: 499 SICEDKGLQFIIDNNINEKTIFIGDKPRIRQIIFNLISNAVKFTHKGS-ITLNFSHTLTA 557

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
              + + ++V+DTG+G+    L+   +PF Q   S   +  GTGLGL + K + D   G 
Sbjct: 558 KGEQAIQIKVQDTGIGIRKKRLKHIFEPFIQAETSTTRQYGGTGLGLAIVKQLTDTMKGY 617

Query: 792 FYIFSTPAKGTLIEIIFPLYDT 813
             + S+  KGT   ++ PL  T
Sbjct: 618 ISVNSSEGKGTCFTLVLPLEIT 639



 Score = 43.1 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 43/142 (30%), Gaps = 6/142 (4%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL--LKRQNTW 143
            + +D    L  I++      GN    + G  L  V  +  I   N    L  LK   + 
Sbjct: 288 IFILDKQSKLTWINQSYSVLSGNTLEDIKGKDLPSVLQLDKIQHANIFTLLQSLKAGTSV 347

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             + T    +GT     ID++  PI+  N     +    +        +      +   K
Sbjct: 348 SFELTNNHKDGTLY--WIDVSVTPIFKPNGNIMHY--VVVERDITKKKELENKLIKAADK 403

Query: 204 FSHLHEIKKGHSSVEKEKYDIF 225
               ++ K    +    +    
Sbjct: 404 ADVSNKAKSTFLATMSHELRTP 425


>gi|134291091|ref|YP_001114860.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia vietnamiensis
           G4]
 gi|134134280|gb|ABO58605.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia vietnamiensis
           G4]
          Length = 989

 Score =  341 bits (874), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 106/651 (16%), Positives = 235/651 (36%), Gaps = 43/651 (6%)

Query: 182 GIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS 241
           G     R      A+            ++    + V      +          R  ++V 
Sbjct: 128 GAERRLRESEQRYAITLSSIGDGVLSTDVDGFVTFVNLAGEALTGWSRSEATGRRLSEVF 187

Query: 242 SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301
           SL +   H   +       L T  +  LP +        +    +     + +       
Sbjct: 188 SLHDENTHAP-IEDPMAAVLQTGSDGGLPARTILRARGGSDLPVECTGTPMTDERGVRQG 246

Query: 302 YLSHRNHPSLSAYFDEGE------NLTPETVDKCPIPFFV-------YSHGNLFYANPSF 348
            +      +      E E            +    +  +        +  G   Y+N   
Sbjct: 247 IVIVFRDVTQKRRAQEAEILRETNARLEMAMYGSNVGVWEIDMPEGDHKRGFARYSN--I 304

Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
                + +           ++L        +      L   D        RL   +    
Sbjct: 305 YEWLGFDTPQARLDYEAYMSVLHPDHRDSTDRAVASFLESGDG-LFELENRL---RHRDG 360

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468
           +   +      + +   + +   G   +  + ++ ++ +     +     E  + G+A  
Sbjct: 361 SDRWVLVRGTARRDATGKPVRFVGSLVDITELKMTEQALRASEERFRGTFENAAVGVAHC 420

Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528
           + +G  L  N+   ++ G+P + + ++     +  +           +    L+   E  
Sbjct: 421 DLDGRFLRVNQRSGEIVGWPRDALQQRRLHELIHADFSVASTERFRLLTEGRLKHYSE-E 479

Query: 529 TLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
                 + + + + + +     +S       + + DISE K  +  +  AK  AE  S  
Sbjct: 480 VPLVRFDGERVWVTLSVALQHDASGQTAHVIVIIQDISERKALEETVRVAKDAAEAASRA 539

Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
           K  FLA +SHE+RTPL  I+G++++++        + R +     I++SG  +L ++ND+
Sbjct: 540 KDQFLANISHELRTPLNGILGYAQILQRDAR---LDTRQLASVGVIEQSGQHLLTLINDI 596

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRS 703
           LD +++ +GK+ L    VSL   +     +V + A +KR+++    A ++P  +  D R 
Sbjct: 597 LDFARLGAGKLELQVGEVSLRGFLETIAEIVAVRAQQKRLVLNYVAAPDLPAVVRVDERR 656

Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
           ++Q+ LN+L+NA+ FT  G ++ +S +  +   +   VRDTG+G++   LE   +PF Q 
Sbjct: 657 LRQVLLNLLANAVQFTDHG-EVTLSVSRGAAGRLRFEVRDTGIGVSADRLEAIFQPFEQA 715

Query: 764 PNSQ------QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            +         +          +++ +V    G+  + S+  +G++     
Sbjct: 716 GDHTRRGGGAGLGLA-------ISRQLVRMMGGEIEVTSSAGEGSVFGFEL 759



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/390 (9%), Positives = 107/390 (27%), Gaps = 32/390 (8%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP----NNHIGDLLKRQ- 140
             + D  G++  ++       G    +  G RL +V  +   +      + +  +L+   
Sbjct: 151 VLSTDVDGFVTFVNLAGEALTGWSRSEATGRRLSEVFSLHDENTHAPIEDPMAAVLQTGS 210

Query: 141 -NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSG-FRGFGIVHVNRVDNDPRALGK 198
                 +T L    G++  +P++    P+        G    F  V   R   +   L +
Sbjct: 211 DGGLPARTILRARGGSD--LPVECTGTPMTDERGVRQGIVIVFRDVTQKRRAQEAEILRE 268

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP-----------PPHLRMKNKVSSLTEYY 247
              +    ++    G   ++  + D     +             P  R+  +      + 
Sbjct: 269 TNARLEMAMYGSNVGVWEIDMPEGDHKRGFARYSNIYEWLGFDTPQARLDYEAYMSVLHP 328

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
            H+D          L S +     +      + +           ++ + +   ++    
Sbjct: 329 DHRDST-DRAVASFLESGDGLFELENRLRHRDGSDRWVLVRGTARRDATGKPVRFVGSLV 387

Query: 308 HPSL----SAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEI 362
             +            E     T +   +        G     N     +  +   D ++ 
Sbjct: 388 DITELKMTEQALRASEERFRGTFENAAVGVAHCDLDGRFLRVNQRSGEIVGWPR-DALQQ 446

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
                 L +      + A        ++      S  +  ++++ E  + +T     + +
Sbjct: 447 R----RLHELIHADFSVASTERFRLLTEGRLKHYSEEVPLVRFDGER-VWVTLSVALQHD 501

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
              +      I  +  + +  +  + +   
Sbjct: 502 ASGQTAHVIVIIQDISERKALEETVRVAKD 531



 Score = 88.9 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/273 (10%), Positives = 77/273 (28%), Gaps = 22/273 (8%)

Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL-LDAPKLSDNNAIKPVMLYRSDR 391
             +     +  A      +++   V       G   L L     +D+     +M  R + 
Sbjct: 6   ILIVEDDRIV-ARDIAQQMSRAGYVVVGSTGSGEDALALVETLAADSKPDLVLMDVRLEG 64

Query: 392 TCIAASARLHTIQWNRENSLAMTFIP---FEKANQFPENMPQNGIEPEDVDTRI------ 442
                       +      + +T        +     E         +D+  R       
Sbjct: 65  ELDGIDTARRIREARDIPVVFLTAYADEETIRRATAAEPYGYVLKPFDDMQLRTVVEMAL 124

Query: 443 ----NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
                +R++     +    L +  DG+   + +G +   N A   L G+   +   +  +
Sbjct: 125 YKHGAERRLRESEQRYAITLSSIGDGVLSTDVDGFVTFVNLAGEALTGWSRSEATGRRLS 184

Query: 499 VFL---EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY- 554
                 ++NT + +   +  +L       L   T+   +    L +      +       
Sbjct: 185 EVFSLHDENTHAPIEDPMAAVLQTGSDGGLPARTILRARGGSDLPVECTGTPMTDERGVR 244

Query: 555 ---SLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
               +   D+++ ++ +      +  A  E + 
Sbjct: 245 QGIVIVFRDVTQKRRAQEAEILRETNARLEMAM 277



 Score = 65.4 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 33/373 (8%), Positives = 90/373 (24%), Gaps = 18/373 (4%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN--TWYGKT 147
           D  G    +++   + +G     +   RL ++        +     LL       +  + 
Sbjct: 421 DLDGRFLRVNQRSGEIVGWPRDALQQRRLHELIHADFSVASTERFRLLTEGRLKHYSEEV 480

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
            L   +G    V + L+    +  + + +      I+             +         
Sbjct: 481 PLVRFDGE--RVWVTLSVALQHDASGQTAHV--IVIIQDISERKALEETVRVAKDAAEAA 536

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT---- 263
              K    +    +           + ++  + + L         V++     LLT    
Sbjct: 537 SRAKDQFLANISHELRT-PLNGILGYAQILQRDARLDTRQLASVGVIEQSGQHLLTLIND 595

Query: 264 --SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE-YLSHRNHPSLSAYFDEGEN 320
                     + +     ++     +    +     +     L++   P L A     E 
Sbjct: 596 ILDFARLGAGKLELQVGEVSLRGFLETIAEIVAVRAQQKRLVLNYVAAPDLPAVVRVDER 655

Query: 321 LTPE-TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
              +  ++          HG +  +             +  +   G+S            
Sbjct: 656 RLRQVLLNLLANAVQFTDHGEVTLSVSRGAA--GRLRFEVRDTGIGVSADRLEAIFQPFE 713

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
                           A +R   ++         +         F  + P +   P +  
Sbjct: 714 QAGDHTRRGGGAGLGLAISR-QLVRMMGGEIEVTSSAGEGSVFGFELDAPASAAGPCERI 772

Query: 440 TRINKRKMEIEVM 452
            R+   +++    
Sbjct: 773 PRLQADRLDGARR 785


>gi|221197648|ref|ZP_03570695.1| PAS domain protein [Burkholderia multivorans CGD2M]
 gi|221204320|ref|ZP_03577338.1| PAS domain protein [Burkholderia multivorans CGD2]
 gi|221176486|gb|EEE08915.1| PAS domain protein [Burkholderia multivorans CGD2]
 gi|221184202|gb|EEE16602.1| PAS domain protein [Burkholderia multivorans CGD2M]
          Length = 1380

 Score =  341 bits (874), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 133/793 (16%), Positives = 283/793 (35%), Gaps = 71/793 (8%)

Query: 36   TEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFV-FDPIPRTVRFTWN------ 88
            T ++K    C       + +   +   + T    +      F       R          
Sbjct: 501  THRAKAATACPPLLHVESGSADERPVPTPTLRAPASPVQRNFSYAELHQRALEMYSPPSV 560

Query: 89   -IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
             ID    +  +S+   + + +   ++    +  V   L +D    I   L+   +   + 
Sbjct: 561  IIDKESNVVHLSDNAGRFLRHVGGELSSNIMTLVLPDLRLDLRTAIFRALQTGTSVEARR 620

Query: 148  TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
              W  +       I++   P + +                    +   L    D+    +
Sbjct: 621  VKWTHD--TQVSWINMTVRPFHDK------------------VANADFLLVVFDEVDGRM 660

Query: 208  HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
             +  +  +S +            P   ++++++    E  A   +  +T    L  S E 
Sbjct: 661  TDEDQAEASGQD-----------PVLAQLEHELQHSREQLATIIEQYETSVEELKASNEE 709

Query: 268  SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
                 E+  + +    + K+   ++      +   +  R   +  A  D    +    + 
Sbjct: 710  LQAINEELRSTSEELESSKEELQSVNEELTTANAEMQARIEDTAKANDDLHNIIASSEI- 768

Query: 328  KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
                  FV     +    P+   +      D       ++  L  P L+D+       L 
Sbjct: 769  ---ATVFVDKEIRIKRFTPNATAIFNLIDSDLGRSLFHITHSLRYPTLADDVRQSFQSLR 825

Query: 388  RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
              +R           I+        +  +P+  A+             +  D    +   
Sbjct: 826  LIERE----------IESEAGRWYLIRLLPYRTAD--DHIDGAVITLIDVTDRHHAEEAA 873

Query: 448  EIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
                 +L  + ++T D  I I +  GII S N    ++FGY  ++++ +   +  E N  
Sbjct: 874  RAGEQRLRLVAQSTKDYAIIIQDGNGIIASWNAGAERIFGYTEDEMIGQDVELIYEPNDR 933

Query: 507  SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEW 564
                      ++    +  +      TK+ + +    ++  +  +  + ++  + D+++ 
Sbjct: 934  HARVPAHEREVATREGRA-DDERWHRTKDGRRIFCSGVVTPISDTSFNGFAKIVRDLTQR 992

Query: 565  KQEKNKLSHA-------KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
            K  ++    A       ++ A   +  K +F+A +SHE+R PL  I   +E +  +    
Sbjct: 993  KLSEDANREALAREQAAREQALSSNQLKDEFIAVLSHELRHPLNLIGVRAE-MLPRLPET 1051

Query: 618  LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
               P   E A  I ++      I++DLLD+S+I +GK+ L    V L   +   +   + 
Sbjct: 1052 RDIPAVREAAELIRQAVRAQAQIIDDLLDLSRIRTGKLALELSRVDLTAVLRTIVDTCEA 1111

Query: 678  YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737
             A+ + ++++T F +     LAD    +QI  N++SNA+ FT +GG+I++  TH +   +
Sbjct: 1112 DAHARGLVLQTEFPDEPAIALADPIRCEQIFWNLMSNALKFTHAGGRIVVRLTHEAR-ML 1170

Query: 738  ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS- 796
             + V D G G+    L      F Q P  +     G G+GL L + +V+ + G+    S 
Sbjct: 1171 RVDVIDDGQGIDRDTLPHVFDMFRQAPRDRTR--GGLGIGLALVRQLVEMHDGRISAASD 1228

Query: 797  TPAKGTLIEIIFP 809
             P +GT + +  P
Sbjct: 1229 GPGRGTTMTVWLP 1241


>gi|262196389|ref|YP_003267598.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
 gi|262079736|gb|ACY15705.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
          Length = 765

 Score =  341 bits (874), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 124/594 (20%), Positives = 230/594 (38%), Gaps = 34/594 (5%)

Query: 229 SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288
                 RM+  V S+       D++ + E++ +    E  +              T  ++
Sbjct: 36  EHQAVQRMRTMVHSVNYAVESMDELSQLERFVMAVGGEDDIEVLAIIGGEPARVVTSSRF 95

Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSF 348
               +  S  + E        +  +  +       + +     P ++   G       S 
Sbjct: 96  GWNGRQISDMASEIPLDAIAEAQRSGGERLLEEGEDHLRLLS-PLYLNKTGRARAMWHSG 154

Query: 349 LLL----TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
           L++          +    A   S L     L         +     R   A SA +   +
Sbjct: 155 LIMAVIDFGTVRHEAERDAVQASLLALGLILVLATGAVVTLRRVVLRPLRAVSAAMGR-R 213

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
              +      +      ++  E         + +  +           QL ++++  S  
Sbjct: 214 TAGQR---QAYAKVYADDELGELARTLNHMVDVLSDK---------EAQLRTLIDNVSGA 261

Query: 465 IAIINREG--IILSTNRAVSKLFGYPVEDILRK-PFTVFLEQNTPSVMNHYLTEILSLDL 521
           +  +  +G   +   +  + +L GYP   +     F   +  +   V+   + E      
Sbjct: 262 VYQLKWQGNWRLAFMSEHLEELAGYPSSYLDGNFRFVNLIHPDDVGVLRALMQETTKARG 321

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKI 577
               +        + +   +   ++ +   S         + D++E  Q+   L  AK+ 
Sbjct: 322 -SGYQLEYRIIHADGEERWVLDRVRLVYDDSGRPLHADGILVDVTERHQQSELLREAKEA 380

Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
           AE  S  KSDFLA +SHEIRTPL  +IG + ++ +       +    EYA  ID SGNL+
Sbjct: 381 AEVASRVKSDFLATMSHEIRTPLNGVIGMASLLLDTEL----SDEQREYAETIDVSGNLL 436

Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR- 696
           L ++ND+LD SKIE+G+M L      L   + E +++V   A EK + +       +PR 
Sbjct: 437 LALINDILDFSKIEAGRMELEEVAFELRYLIEETLAIVAPRAREKNLSLDWQAEAAVPRR 496

Query: 697 ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRVR--DTGVGMTNYEL 753
           ++ D + ++Q+ LN++ NAI FT  G  +I +       + ++L V   DTG+G++  E+
Sbjct: 497 VIGDAQRMRQVLLNLVGNAIKFTHDGSVEIRVRVREREGDALLLEVAVADTGIGISPGEM 556

Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
            +  +PF Q   S   +  GTGLGL + K +VD   G   + S P +G+     
Sbjct: 557 MRIFEPFSQADASTTRQYGGTGLGLAICKRLVDRMGGTVVVKSQPGRGSTFSFT 610


>gi|81300166|ref|YP_400374.1| multi-sensor signal transduction histidine kinase [Synechococcus
            elongatus PCC 7942]
 gi|81169047|gb|ABB57387.1| multi-sensor signal transduction histidine kinase [Synechococcus
            elongatus PCC 7942]
          Length = 1807

 Score =  341 bits (874), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 101/731 (13%), Positives = 228/731 (31%), Gaps = 51/731 (6%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            +D  G L   +    + +     ++    L  +   L +                     
Sbjct: 1117 VDERGKLAFANPTAQEWLAIDKSELSQQSLDQLL-PLDLTA------------------- 1156

Query: 149  LWPIEGTNLYVPIDLAALPIYSRNREFSG----FRGFGIVHVNRVDNDPRALGKRLDKKF 204
             W   G      + L    +    R   G         ++H            +  D+ F
Sbjct: 1157 -WNQGGVGNQGELKLKGRILQYEARPLVGPVAERGWVLVLHDVTAQRQVDQAMRERDQFF 1215

Query: 205  SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
            S   E+      +      +    +          V           D  +         
Sbjct: 1216 SLSLEMFC-MVDLRGRFIQVNPAFAATLRYSTAELVGRPYLELVDLGDRSQIATTIRRLK 1274

Query: 265  EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
                + +          +    Q    L ++              ++     +   L   
Sbjct: 1275 AGLLIHDLVIRVWDKAGELHWLQISAALGDDRVIYCVARDVTEQRAIQEQILQQNLLLRM 1334

Query: 325  TVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
                  +  + V         +P    L  +   D          L   P        K 
Sbjct: 1335 AGQTAKLGGWSVELPSREVIWSPETFSLLGFTDED---EPDLEEALSLYPPAERALVTKA 1391

Query: 384  VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
            +               +H         L          ++    +  +G   +  D +  
Sbjct: 1392 LEDCIQQGISFDFDVAVHNTS---GFLLDARVTGQAVRDETGAIVRISGAFQDVSDRKRA 1448

Query: 444  KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            +R+ +    +L + LE+ +DG   ++        N+  ++  G  VE+ L +        
Sbjct: 1449 QREAQRLADRLRTTLESITDGFYTLDENWRFSYLNQEGAQQLGVNVEETLGQMVWTAFPG 1508

Query: 504  NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
            +  S + H   + ++       E          +   +             ++   D+SE
Sbjct: 1509 SYESELGHIYRQAIATGEAAHFE---TYYEPFGRWFEVHAYPS----EDGLAVYFRDVSE 1561

Query: 564  WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             +Q +  L    +  E+ +    +F    SH+++ PL  I  FS+ +  +      +   
Sbjct: 1562 RRQTEQNLRITLRELERSNQELQEFAFVASHDLQEPLRKIQAFSDRLIAR--TSNLDDES 1619

Query: 624  IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
             +Y   +  +   +  ++ DLL+ S++ +  + L  +P+SLD+ + + +  ++   ++  
Sbjct: 1620 QDYLRRMASAAGRMQTLIIDLLNYSRVNTRGLPL--QPLSLDQVLDDVLVDMEASLDQAS 1677

Query: 684  ILIRTSFANNIPRILADLRSVKQIALNILSNAIHF--TPSGGQIIISTTHTSNEEVILRV 741
             ++       +P I  D    +Q+  N+LSNA+ F    +   I I +  T   ++ L +
Sbjct: 1678 AIVERQ---PLPTIQGDAGQFRQVFQNLLSNALKFQSADNQPLIQIYSELTEAGQLRLCI 1734

Query: 742  RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
             D G+G     L++   PF ++ +  +    GTG+GL + K +++ +       S P +G
Sbjct: 1735 ADNGIGFDEKYLDRIFNPFQRLHS--RDAYAGTGIGLAIVKKIIERHGATITAKSIPGQG 1792

Query: 802  TLIEIIFPLYD 812
            ++  I FP+ +
Sbjct: 1793 SVFFITFPVTE 1803



 Score = 84.7 bits (208), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 27/216 (12%), Positives = 71/216 (32%), Gaps = 7/216 (3%)

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
            +   L    R+C +     H  Q     ++   F      +Q  + +    +       
Sbjct: 717 DRDTALIHGLRSCWSFPLIAHNGQVQGTLAVYQPFPQTPSEDQLQQCLTVAQLAAIAFAR 776

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
            +++++++    +  S+     D +   + +GI  S N A  ++     + I+ K F+  
Sbjct: 777 SLDRQQLQDSEQRFRSLFTFNPDAVYSFDLQGIYQSMNSAGFEILDRQADQIIGKHFSDV 836

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLT 557
           +          +  +    + +         + +  +L  L +    +  ++        
Sbjct: 837 VISEDLEKCQQHFDQACKGEAQ---HYEIRINGRNGQLFYLDVSKFPIVVNNKIVGVFGI 893

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
             DI++ KQ    L  A   + K++      L   +
Sbjct: 894 AKDITQRKQITADLQQALMQSNKQTEQLRR-LGNAA 928



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 55/159 (34%), Gaps = 15/159 (9%)

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
             I+E T D +   +REG  L  + +  KLFGY  E+++ +P+   +      +      
Sbjct: 503 QRIMEFTMDVLCSFDREGRFLEVSPSCLKLFGYSPEELIGRPYLELVLPEDRDLTIQEAQ 562

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA 574
           ++++     T         K+  ++ +                 HDI+   Q +   +  
Sbjct: 563 QLMTGRP--TYNFRNRYRHKDGHVIHILWSADWSETDQVLFAVAHDITPLVQNEAFANRQ 620

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
           + I    S  +             PLT I+     +  +
Sbjct: 621 RDILSLISLDR-------------PLTEILTAICAMVEE 646



 Score = 78.1 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 55/545 (10%), Positives = 133/545 (24%), Gaps = 98/545 (17%)

Query: 48   SFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIG 107
                  F           +     + F F+P        ++ D  G  + ++    + + 
Sbjct: 768  QLAAIAFARSLDRQQLQDSEQRFRSLFTFNPDA-----VYSFDLQGIYQSMNSAGFEILD 822

Query: 108  NYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPIEGT-NLYVPIDLAA 165
              A ++IG    DV     ++    H     K +           I G       +D++ 
Sbjct: 823  RQADQIIGKHFSDVVISEDLEKCQQHFDQACKGEAQH----YEIRINGRNGQLFYLDVSK 878

Query: 166  LPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF 225
             PI   N +  G   FGI          + +   L +     ++  +    +        
Sbjct: 879  FPIV-VNNKIVGV--FGIAKDIT---QRKQITADLQQALMQSNKQTEQLRRLGNAAIATA 932

Query: 226  SQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTK 285
              Q          ++                    L   ++ S        +     +  
Sbjct: 933  ELQDH-------QELVKYLVEQVRLTIRAHQAVISLTRCDDWSQSINAISLSDKYAAWKN 985

Query: 286  KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYAN 345
                 T +       E                      +  DK P               
Sbjct: 986  YDELSTGEGIYTLICETNQPLVLTQEELEKHPRWRGFGDQADKHP--------------- 1030

Query: 346  PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405
                            + G L+  L  P       +  + L   +               
Sbjct: 1031 ---------------PMRGWLAVPLFDPN---GRNLGVLQLSDKEEGEFD---------- 1062

Query: 406  NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465
            + + ++A  F     A                 +    +++++ ++    +I +  ++G+
Sbjct: 1063 DDDLAIAQQFAQMTVA--------VLENNRLLNEVLTAEQQLKEQLSFNSTITDCMAEGL 1114

Query: 466  AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
              ++  G +   N    +       ++ ++     L  +        LT      +    
Sbjct: 1115 LAVDERGKLAFANPTAQEWLAIDKSELSQQSLDQLLPLD--------LTAWNQGGVGNQG 1166

Query: 526  EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
            E    G   + +   L   +        + L +HD++  +Q            ++    +
Sbjct: 1167 ELKLKGRILQYEARPLVGPV----AERGWVLVLHDVTAQRQV-----------DQAMRER 1211

Query: 586  SDFLA 590
              F +
Sbjct: 1212 DQFFS 1216



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/430 (9%), Positives = 94/430 (21%), Gaps = 76/430 (17%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN-TWYGKTT 148
           D  G   E+S    K  G    ++IG    ++      D        L     T+  +  
Sbjct: 517 DREGRFLEVSPSCLKLFGYSPEELIGRPYLELVLPEDRDLTIQEAQQLMTGRPTYNFRNR 576

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA---------LGKR 199
               +G  +++        ++S +   +    F + H         A             
Sbjct: 577 YRHKDGHVIHI--------LWSADWSETDQVLFAVAHDITPLVQNEAFANRQRDILSLIS 628

Query: 200 LDKKFSHLHEIKKGHS-----------------------------------SVEKEKYDI 224
           LD+  + +                                           +++      
Sbjct: 629 LDRPLTEILTAICAMVEEFNPSTYCSILRLDRETQQIWTVVAPSLPKEYCQAIDGATVGP 688

Query: 225 FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYT 284
            +        R +  + +  E      +   T     L S   S P       +      
Sbjct: 689 NTGSCGAAIFRRQPVLVADIESDPLWANDRDTALIHGLRS-CWSFPLIAHNGQVQGTLAV 747

Query: 285 KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG-----ENLTPETVDKCPIPFFVYSH- 338
            + +  T   +  +    ++     + +   D       E          P   + +   
Sbjct: 748 YQPFPQTPSEDQLQQCLTVAQLAAIAFARSLDRQQLQDSEQRFRSLFTFNPDAVYSFDLQ 807

Query: 339 GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398
           G     N +   +   ++   I          D     D    +                
Sbjct: 808 GIYQSMNSAGFEILDRQADQIIGK-----HFSDVVISEDLEKCQQHFDQACKGEAQHYEI 862

Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI-------EV 451
           R   I         +    F       + +   GI  +    +     ++        + 
Sbjct: 863 R---INGRNGQLFYLDVSKFPIV-VNNKIVGVFGIAKDITQRKQITADLQQALMQSNKQT 918

Query: 452 MQLCSILEAT 461
            QL  +  A 
Sbjct: 919 EQLRRLGNAA 928



 Score = 41.9 bits (97), Expect = 0.39,   Method: Composition-based stats.
 Identities = 18/246 (7%), Positives = 58/246 (23%), Gaps = 17/246 (6%)

Query: 87   WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI-GDLLKRQNTWYG 145
            + +D +     +++E  + +G    + +G  +       +     HI    +      + 
Sbjct: 1471 YTLDENWRFSYLNQEGAQQLGVNVEETLGQMVWTAFPGSYESELGHIYRQAIATGEAAHF 1530

Query: 146  KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI-VHVNRVDNDPRALGK-RLDKK 203
            +T   P          ++ A P            G  +               +  L + 
Sbjct: 1531 ETYYEPFG-----RWFEVHAYPSED---------GLAVYFRDVSERRQTEQNLRITLREL 1576

Query: 204  FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
                 E+++       +  +   +        +    +   E   +   +          
Sbjct: 1577 ERSNQELQEFAFVASHDLQEPLRKIQAFSDRLIARTSNLDDESQDYLRRMASAAGRMQTL 1636

Query: 264  SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
              +     + +   + L   +  Q    +  + + S +  S                   
Sbjct: 1637 IIDLLNYSRVNTRGLPLQPLSLDQVLDDVLVDMEASLDQASAIVERQPLPTIQGDAGQFR 1696

Query: 324  ETVDKC 329
            +     
Sbjct: 1697 QVFQNL 1702


>gi|319651394|ref|ZP_08005523.1| sensor protein [Bacillus sp. 2_A_57_CT2]
 gi|317396925|gb|EFV77634.1| sensor protein [Bacillus sp. 2_A_57_CT2]
          Length = 594

 Score =  341 bits (874), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 87/364 (23%), Positives = 157/364 (43%), Gaps = 24/364 (6%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            +  E  QL SIL   +DG+   NR+G IL TN    +       ++          +  
Sbjct: 251 ALSQEKEQLASILSGMADGVITFNRDGTILITNPPAERFLQSWFYELDD---IENNTEEV 307

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
           PS +       ++ +  Q  E    G       + +   +    +       + D++E +
Sbjct: 308 PSKVMELFQLAVNTEKEQIGEISIQGR----SWVIIVSPLYNNKYIRGAVAVIRDMTEER 363

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           +                  ++DF+A VSHE+RTP++ + G+SE I +   G   +    E
Sbjct: 364 KL--------------DKLRNDFIANVSHELRTPISMMQGYSEAIVDDIAGT--DEEKKE 407

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
            A+ I      +  +VN+LLD++++E+G + L  E   ++  +   I   Q  A EK I 
Sbjct: 408 MASVIYDESLRMGRLVNELLDLARMEAGHIQLTMEETEVNSYLQRIIRKFQGLAKEKEIS 467

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +     +    I  D   ++Q+  N++ NAI  TP  G++ +    +    + + VRD+G
Sbjct: 468 LEHDLQSKGVPIQIDPDRIEQVMTNLIDNAIRHTPQNGEVKV-LERSDERGLFIEVRDSG 526

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
            G+   +L    + F +   ++     GTGLGL +AK +++A+ G   + S    GT   
Sbjct: 527 SGIPEEDLPFVFERFYKADKARTRGRSGTGLGLAIAKNIIEAHKGHITVQSKTGHGTTFS 586

Query: 806 IIFP 809
           I  P
Sbjct: 587 IFIP 590


>gi|71908367|ref|YP_285954.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
 gi|71847988|gb|AAZ47484.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
          Length = 1275

 Score =  341 bits (874), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 120/726 (16%), Positives = 243/726 (33%), Gaps = 61/726 (8%)

Query: 119 CDVSDILHIDPNNHIGDLLKRQNTWYGKTT--LWPIEGTNLYVPIDLAALPIYSRNREFS 176
             +  +L  D +      + R       +   L    GT   + I L  L ++ R     
Sbjct: 280 AKLIALLDNDQHPVASMAILRDIAADRVSRTQLLFFVGTGSALFIVLLMLALHRRVGSVE 339

Query: 177 GFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM 236
                 ++  N          +   +  +        +        ++       P   +
Sbjct: 340 QH----VIQANDALAASNQRFRDFSESSADWLWETDANLRFSYFSENLQRICGIDPQKVL 395

Query: 237 KNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS 296
               S L                 +L + E+    +                     +  
Sbjct: 396 GKARSELWLNDEINKPDALAGHLAVLENREAFRDFEYCLLNDRGEHLWLLASGIPYFDKE 455

Query: 297 KESFEYLSHRN----HPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLL 351
                Y            L    ++   L  E V+   + F +Y     L   N ++L +
Sbjct: 456 GHFAGYRGIGQNITVRKDLELAAEKSAKLLREAVENVSVGFTIYDEEDRLVICNETYLDI 515

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKL-----SDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
               S   +        +    +      +  +    V    +        A    +  N
Sbjct: 516 YSDSSDLIVPGMHFADIIRKGAERGQYPEAQGDIDGWVCSRVAQHQHPDGLAIEQEL--N 573

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
               L +                  G   +    +  +R++ +    L   +E +++GI 
Sbjct: 574 DGRWLLIIENRTPSG-------YIVGNRIDITARKQAERQLLL----LSMAVEQSTEGIL 622

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
           I + +  I   N A  ++ G+  E+ + +   +     TP      +  +LS    Q  +
Sbjct: 623 ITDVDANIEYVNEAFVRISGFSREEAIGQTPRILDSGLTPRETYAEMWAVLSRG--QLWQ 680

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSC---YSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
              +   K  ++ + R+ I  +        Y     D++E ++  ++L   +   E+  +
Sbjct: 681 GELINKRKSGEIYTERLTIMPMRQDGRVTHYVAVKEDVTEKRRNADELERHRHHLEELVA 740

Query: 584 HKSD------------------FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
            ++                   FLA +SHEIRTP+ AI+G + +++      + +    +
Sbjct: 741 ERTAELAVAHEAAEAASRAKSAFLANMSHEIRTPMNAIVGLTYMLRRT----ITDSGQAD 796

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
               I  S + +L ++ND+LDISKIE+ K+ L     +L+E +S   S+V     EKR+ 
Sbjct: 797 KLGKIAASADHLLGVINDILDISKIEANKLALDQSEFNLEELLSRVTSMVIDRVREKRLE 856

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRV 741
           +      ++  ++ D   + Q  +N L NA+ FT  G  I++             +   V
Sbjct: 857 LIIDTDASLGFLMGDATRLGQSLINYLGNAVKFTDYGS-IVLRARLVEESSNDVLIRFEV 915

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            DTG+G+    L +  + F Q  ++   R  GTGLGL + + +     G+  + ST   G
Sbjct: 916 EDTGIGVAPENLPRLFQVFEQGDSTTTRRYGGTGLGLAITRRLAQLMGGEAGVESTLGVG 975

Query: 802 TLIEII 807
           +   + 
Sbjct: 976 STFWLT 981



 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 48/408 (11%), Positives = 124/408 (30%), Gaps = 25/408 (6%)

Query: 64  NTNYLDSENTFVF-DPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS 122
             N   + +   F D    +  + W  DA+      SE L +  G    K++G    ++ 
Sbjct: 344 QANDALAASNQRFRDFSESSADWLWETDANLRFSYFSENLQRICGIDPQKVLGKARSELW 403

Query: 123 DILHIDPNNHIG---DLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFR 179
               I+  + +     +L+ +  +         +    ++ +  + +P + +   F+G+R
Sbjct: 404 LNDEINKPDALAGHLAVLENREAFRDFEYCLLND-RGEHLWLLASGIPYFDKEGHFAGYR 462

Query: 180 GFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK 239
           G G      V  D     ++  K      E      ++  E+  +         +   + 
Sbjct: 463 GIG--QNITVRKDLELAAEKSAKLLREAVENVSVGFTIYDEEDRLVICNETYLDIYSDSS 520

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEES-------SLPEQEDFHTINLNQYTKKQYFGTL 292
              +   +         E+     ++          + + +    + + Q      +  +
Sbjct: 521 DLIVPGMHFADIIRKGAERGQYPEAQGDIDGWVCSRVAQHQHPDGLAIEQELNDGRWLLI 580

Query: 293 QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLL 351
             N   S   + +R   +     +    L    V++      +     N+ Y N +F+ +
Sbjct: 581 IENRTPSGYIVGNRIDITARKQAERQLLLLSMAVEQSTEGILITDVDANIEYVNEAFVRI 640

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411
           + +   + I         +    L+       +    S          L   + + E   
Sbjct: 641 SGFSREEAIGQTP----RILDSGLTPRETYAEMWAVLSRGQLWQGE--LINKRKSGEIYT 694

Query: 412 -AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458
             +T +P     Q         ++ +  + R N  ++E     L  ++
Sbjct: 695 ERLTIMPM---RQDGRVTHYVAVKEDVTEKRRNADELERHRHHLEELV 739


>gi|116751159|ref|YP_847846.1| putative PAS/PAC sensor protein [Syntrophobacter fumaroxidans MPOB]
 gi|116700223|gb|ABK19411.1| putative PAS/PAC sensor protein [Syntrophobacter fumaroxidans MPOB]
          Length = 1268

 Score =  341 bits (874), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 109/767 (14%), Positives = 225/767 (29%), Gaps = 68/767 (8%)

Query: 86   TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
             W  D       ++  L + +G    +M+G  + +  D              +       
Sbjct: 386  IWLTDRQWKTSYVNSRLERMLGYEPGEMLGRHIEEFMDDEGRLLAREKMAGRESGMPGTY 445

Query: 146  KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
            +  L   +G+ L+  +  +  P+ S + +F G     ++             K  D +F 
Sbjct: 446  EFKLVRRDGSELWAMV--STSPVVSASGQFEGA--LAMLTDITQHKQAEEELKERDDRFK 501

Query: 206  HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
             L     G     K + D       P       ++   T     +D              
Sbjct: 502  KLSSHVPGMIYQFKRRPDGTY--CVPFTTDAVREIFGCTPEAVREDYSPIAGVISAEDWG 559

Query: 266  ESSLPEQEDFH---------TINLNQYTKKQYFGTLQNNSKESFEYL------SHRNHPS 310
                   E             + +     +   G       +    +             
Sbjct: 560  GVIRSIGESAASMTIWQCTFRVQVPGRPVRWMLGNSTPERLDDGSIVWHGFITDVTERKQ 619

Query: 311  LSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDI-EIAGGLST 368
                    E       +   +  F     G+L  ANP+  ++  ++S   + +  G L+ 
Sbjct: 620  AGEALIRSEERYGRLFEDAVLGIFRSTPTGSLVDANPALAVMFGFESPAQMKDSVGNLAG 679

Query: 369  LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
            + D P        + +   +              ++ +   S       +   ++    +
Sbjct: 680  VYDDPARRKEIVQRLLETRK------PVRTEGRFLRRDG-TSFIGNIHLWTVRDEHDNIL 732

Query: 429  PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
               G   +  + ++ +  +E    Q   IL +  +GI  ++ EG     N A   + G+ 
Sbjct: 733  HIEGFVEDITERKLAEEAIEQLRRQNELILNSVGEGILGLDVEGRHTFVNSAAMGMLGFE 792

Query: 489  VEDILRKPFTVFLEQ-----NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
              +++ +             +        + +        +L + T    K+     +R 
Sbjct: 793  PAELIGRRGHDMYHHTRESGDRFPEEECPIYQSYRSGRACSLTQATFWR-KDGSSFPVRY 851

Query: 544  IIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKES--SHKSDFLARVSHEIRT 598
                L          +   DI+  +Q + +         +             ++H+   
Sbjct: 852  SCAPLIEGGKVLGAVVAFRDITRQRQIEEEKDRLTAQLAQAQKMEAIGTLAGGIAHDFNN 911

Query: 599  PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
             L  I+G++E+          +    E    + ++      +   +L  S+    K    
Sbjct: 912  ILGIIMGYAEIA---NLDLPFDSSAKESIAEVLKATRRARGLTAQILTFSR----KHVQE 964

Query: 659  FEPVSLDEAVSEAISLVQLYANEK-RILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
              P+     V EA+ L++        I             L D   + QI +N+ +NA H
Sbjct: 965  KRPLRTVPVVKEALKLLRATLPTTVEIRGEIDLPEGEDLTLGDPTQIHQILMNLSTNAAH 1024

Query: 718  FTPS-GGQIIIST--------------THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
                 GG + +                  +    + L V+DTG GM    L++   P+  
Sbjct: 1025 AMREHGGILSVFLTQVAFDPANDAGVMGLSPGRYLRLTVQDTGHGMDRTVLDRIFDPYFT 1084

Query: 763  IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
               S    GEGTGLGL +   +V    G   + S P  GT+  +  P
Sbjct: 1085 TKGS----GEGTGLGLAVVHGIVKNCNGAITVHSKPGAGTVFHVHLP 1127



 Score = 91.6 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 48/146 (32%), Gaps = 3/146 (2%)

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
                   ++    +   I+E T +GI + +R+      N  + ++ GY   ++L +   
Sbjct: 360 QRTQAYEALQASEERYRRIIETTEEGIWLTDRQWKTSYVNSRLERMLGYEPGEMLGRHIE 419

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSL 556
            F++     +    +       +  T E   +     E    +                 
Sbjct: 420 EFMDDEGRLLAREKMAG-RESGMPGTYEFKLVRRDGSELWAMVSTSPVVSASGQFEGALA 478

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKES 582
            + DI++ KQ + +L       +K S
Sbjct: 479 MLTDITQHKQAEEELKERDDRFKKLS 504



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 50/465 (10%), Positives = 128/465 (27%), Gaps = 33/465 (7%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL-------KRQN 141
            +D  G    ++      +G    ++IG R  D+        +    +           + 
Sbjct: 772  LDVEGRHTFVNSAAMGMLGFEPAELIGRRGHDMYHHTRESGDRFPEEECPIYQSYRSGRA 831

Query: 142  TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
                + T W  +G++   P+  +  P+        G +  G V   R     R + +  D
Sbjct: 832  CSLTQATFWRKDGSSF--PVRYSCAPL------IEGGKVLGAVVAFRDITRQRQIEEEKD 883

Query: 202  KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
            +  + L + +K  +             +    +    ++++L   +         E    
Sbjct: 884  RLTAQLAQAQKMEAIGTLAGGIAHDFNNILGIIMGYAEIANLDLPFDSSAKESIAEVLKA 943

Query: 262  LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
                     +   F   ++ +    +    ++   K     L             EGE+L
Sbjct: 944  TRRARGLTAQILTFSRKHVQEKRPLRTVPVVKEALKLLRATLPTTVEIRGEIDLPEGEDL 1003

Query: 322  TPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
            T         P  ++        N +  +      +             +   +   +  
Sbjct: 1004 T------LGDPTQIHQILMNLSTNAAHAMREHGGILSVFLTQVAFDPA-NDAGVMGLSPG 1056

Query: 382  KPVMLYRSDRTCIAASARLHTI---------QWNRENSLAMTFIPFEKANQFPENMPQNG 432
            + + L   D         L  I                         K       +    
Sbjct: 1057 RYLRLTVQDTGHGMDRTVLDRIFDPYFTTKGSGEGTGLGLAVVHGIVKNCNGAITVHSKP 1116

Query: 433  IEPEDVDTRINKRKMEIEVMQLCSI-LEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
                     + K + E   +++  + +   S+ + +++ E  ++   + + +  GY V  
Sbjct: 1117 GAGTVFHVHLPKLEREASSIEVAPVSIATGSESVIVVDDEEKLVIAIKRMLEYLGYKVTA 1176

Query: 492  ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT-LEKITLGSTKE 535
            +     T+ L +  P   +  +T+     +    L +  +G   +
Sbjct: 1177 MTSSVATLSLFRQQPEGFDVMITDYTMPGMTGIDLAREIIGIRPD 1221


>gi|186682604|ref|YP_001865800.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC
           73102]
 gi|186465056|gb|ACC80857.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC
           73102]
          Length = 709

 Score =  341 bits (874), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 94/538 (17%), Positives = 202/538 (37%), Gaps = 19/538 (3%)

Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPS 347
               L N  +     ++           ++    + +   +  +       G   +   +
Sbjct: 40  ILAPLYNPEQAIAGVIAVSRDIGERKRTEQALRQSEQ---RLQMAQRAGKIGTWEWNVAT 96

Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKL---SDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
             +       + + +  G       P +     N+  + +                  I 
Sbjct: 97  GEVFWSEGIWEILGLEIGTEEPGVKPWVDFIHPNDRPRVMEGVEKVLAEGKEYYDEFRIV 156

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
                 + +        +   +     G+  +  + +  +   +    +  + +  +   
Sbjct: 157 RRDNTVIWVASKGQIIRDAEGQAECFLGVNIDISERKQAEEVRQESEERFQAFMAHSPAA 216

Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR-Q 523
             I + +G ++  +      F    +D + K      +    + + + +  +   +   +
Sbjct: 217 AWITDADGKVIYLSPTYVNTFQLFTQDAIGKTAFELFDLEIATQLLNNIQTVAKTNQVLE 276

Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA-------KK 576
           T+E            L  +  I  L   S       D++  ++ + +           ++
Sbjct: 277 TIEMAPRLDGTIGDFLVYKFPIAHLSGQSLVGGVAIDVTSRRRAEEEREELLLREQAARE 336

Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
            AE  +  K +FLA +SHE+RTPL  I+G+ ++++  +   L   +       I+R+  L
Sbjct: 337 AAETANRIKDEFLAVLSHELRTPLNPILGWIKLLRTHQ---LSEEKKAIALETIERNAKL 393

Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696
              ++ DLLD+S+I  GK+ L+   V L   ++ A   V L A  K I I T  A ++  
Sbjct: 394 QTQLIADLLDVSRILQGKLTLNISSVDLAATIAAANETVALAAEAKSIQIHTEIAPDVQL 453

Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKA 756
            + D   ++Q+  N+L+NA+ FTP+GG++ I    T N    ++V DTG G+T   L   
Sbjct: 454 FMGDASRLQQVVWNLLTNAVKFTPTGGEVKIKLEST-NTYTQIQVSDTGKGITPEFLPYV 512

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFPLYDT 813
            + F Q  ++   +  G GLGL + + +V+ + G  +  S    +G +  +  PL  T
Sbjct: 513 FETFRQADSATTRKFGGLGLGLAIVRHIVEMHGGTVHADSKGEDQGAIFTVRLPLITT 570



 Score = 46.2 bits (108), Expect = 0.024,   Method: Composition-based stats.
 Identities = 12/137 (8%), Positives = 33/137 (24%), Gaps = 7/137 (5%)

Query: 96  KEISEELPKTIGNY--AFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTWYGKTTLWPI 152
              SE + + +G      +       D             +  +L     +Y +  +   
Sbjct: 99  VFWSEGIWEILGLEIGTEEPGVKPWVDFIHPNDRPRVMEGVEKVLAEGKEYYDEFRIVRR 158

Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212
           + T   + +      I     +   F G  I            + +  +++F        
Sbjct: 159 DNT--VIWVASKGQIIRDAEGQAECFLGVNI--DISERKQAEEVRQESEERFQAFMAHSP 214

Query: 213 GHSSVEKEKYDIFSQQS 229
             + +      +     
Sbjct: 215 AAAWITDADGKVIYLSP 231


>gi|295402149|ref|ZP_06812108.1| multi-sensor signal transduction histidine kinase [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312112731|ref|YP_003991047.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y4.1MC1]
 gi|294975832|gb|EFG51451.1| multi-sensor signal transduction histidine kinase [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311217832|gb|ADP76436.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y4.1MC1]
          Length = 609

 Score =  341 bits (874), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 96/387 (24%), Positives = 165/387 (42%), Gaps = 25/387 (6%)

Query: 426 ENMPQNGIEPEDVDTRINKRKM--EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           + + Q  +   ++  ++ + +   E E  +L S+L   +DG+   +R G I+  N A   
Sbjct: 235 DEIGQLAMTFNNLTKKLQEAQATTEGERRKLESVLTHMTDGVIATDRRGRIILINDAALN 294

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +     E +L       L           L E  SL L  + ++             L +
Sbjct: 295 ILNVSRETVLSSSIIDVLGIGDQYTFETLLEEQDSLILDFSTDEELYILRAS-----LSV 349

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
           I K+  F +   + +HDI+E ++                  + +F+A VSHE+RTPLT +
Sbjct: 350 IQKETGFVNGLIVVLHDITEQEKI--------------DRERREFVANVSHELRTPLTTM 395

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
             + E +    +          +   I      ++ +VNDLL +SK++S    L+   V+
Sbjct: 396 KSYLEALAEGAWQ--DKAIAPRFIEVIQTETERMIRLVNDLLQLSKLDSKDYKLNKSWVN 453

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
             E   + I   +     + I            I  D   + Q+  NI+SNAI ++P GG
Sbjct: 454 FSEYFHKVIDRFE-LTKSENITFVRKIPKEAIFIEIDEDKITQVLDNIISNAIKYSPQGG 512

Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
           +I         +E+I+ V D GVG+   +L K  + F ++  ++  +  GTGLGL +AK 
Sbjct: 513 KITFRVR-ELADEIIVSVSDEGVGIPKADLAKVFERFYRVDKARSRKLGGTGLGLAIAKE 571

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFPL 810
           +V A+ G  +  S   KGT I    PL
Sbjct: 572 VVIAHGGTIWAESKEHKGTTIFFTLPL 598


>gi|308270675|emb|CBX27286.1| hypothetical protein N47_I07060 [uncultured Desulfobacterium sp.]
          Length = 701

 Score =  341 bits (874), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 103/396 (26%), Positives = 174/396 (43%), Gaps = 36/396 (9%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           ++     +   ++   +  I   + +G I   N    + FGY   +IL +     +    
Sbjct: 303 ELRASERKYRELVMLANSIILRWSDDGRITFLNEFGQRFFGYSETEILGQHVIGTIVPEN 362

Query: 506 P---SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTM 558
                 +   + +IL+   +             E+ + +    K +   S          
Sbjct: 363 ETTGRNLRPLMEDILADPQKFERNINENMRRNCER-VWIDWTNKVVLDESGRIKEILSIG 421

Query: 559 HDISEWKQEKN-------------------------KLSHAKKIAEKESSHKSDFLARVS 593
            DI++ KQ +                          +L  AK+ AE     K  FLA +S
Sbjct: 422 SDITDRKQAEEQISRLNNDLRRHAKELEQRVADRTAELVIAKERAESADRIKPAFLATMS 481

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HE+RTPL +IIGF+ ++  +  GPL N    +    +  S   +L ++ND+LDISKIE+G
Sbjct: 482 HELRTPLNSIIGFTGIMLQELAGPL-NEEQRKQLTMVQSSSRHLLSLINDVLDISKIEAG 540

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713
           ++ L      L  ++ + + LV   A +K + +R   A++I     D R ++Q+ LN+L+
Sbjct: 541 QLELSVTSFELRPSIEKMVKLVLPMAKKKGLDLRVYIADDINTAATDQRRLEQVVLNLLN 600

Query: 714 NAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
           NA+ FT  G  + IS    +++ + L V DTG G+   EL    +PF QI      + EG
Sbjct: 601 NAVKFTEKG-YVHISCRIENDKYL-LSVSDTGTGIRPEELSGLFQPFHQIDTGLTRKYEG 658

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           TGLGL + K ++D   G   + S   KG+   + FP
Sbjct: 659 TGLGLSICKRLLDMMGGTIDVQSQWGKGSTFIVRFP 694



 Score = 43.9 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 20/244 (8%), Positives = 63/244 (25%), Gaps = 8/244 (3%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY---GKTT 148
            G +  ++E   +  G    +++G  +       +     ++  L++          +  
Sbjct: 328 DGRITFLNEFGQRFFGYSETEILGQHVIGTIVPENETTGRNLRPLMEDILADPQKFERNI 387

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
              +      V ID     +   +         G                RL+       
Sbjct: 388 NENMRRNCERVWIDWTNKVVLDESGRIKEILSIGS--DITDRKQAEEQISRLNNDLRRHA 445

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           +  +   +    +  I  +++          +++++       + +      +L      
Sbjct: 446 KELEQRVADRTAELVIAKERAESADRIKPAFLATMSHELRTPLNSIIGFTGIMLQELAGP 505

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
           L E++    + + Q + +     + +    S            S           + V  
Sbjct: 506 LNEEQRKQ-LTMVQSSSRHLLSLINDVLDISKIEAGQLELSVTSFELRPSIEKMVKLV-- 562

Query: 329 CPIP 332
            P+ 
Sbjct: 563 LPMA 566


>gi|315187462|gb|EFU21218.1| integral membrane sensor hybrid histidine kinase [Spirochaeta
           thermophila DSM 6578]
          Length = 752

 Score =  340 bits (873), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 96/426 (22%), Positives = 183/426 (42%), Gaps = 30/426 (7%)

Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPE--------DVDTRINKRKMEIEVMQLCSI 457
                 +    P          +  +G+                 ++ +++    +L  I
Sbjct: 171 EGAPYFSFLLDPVGIVAGGAVLLFYSGLGAAYLVTVIDFIAKAARSEIQLKKSEERLEGI 230

Query: 458 LEATSDGIAI---INREGII--LSTNRAVSKLFGYPVEDILRKPFTVF--LEQNTPSVMN 510
           ++    G+ +   ++  G I     +    ++FG  V+ IL+ PF     + +     + 
Sbjct: 231 VQNIP-GVILQLEMSVSGNIYYTYISDQAREIFGEKVDRILQNPFATLRFMPKEKLRAIV 289

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEE-KLLSLRIIIKKLPFSSCYS-LTMHDISEWKQEK 568
           H +  +    +   L       T+   +   + + +      + Y    + D  E    +
Sbjct: 290 HTIRNL--DRISVPLGWDVRLRTRRGYRWFRVTVSVTPSAEGTFYLNAIVLDTEEIHAYQ 347

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
            +L  AK+ AE+    KS FLA +SHE+RTPL  IIG SE++ +           +EYA 
Sbjct: 348 ERLKEAKEEAERADRAKSAFLATMSHELRTPLNGIIGMSELLMSSGLSG----ELVEYAR 403

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I  +G  +L ++ND+LD+S++ESGK+ +   P  L   +      +      K +    
Sbjct: 404 TIQTAGENLLALINDILDVSQLESGKLKVERRPCDLKAVLLHVYKTLYPQTIHKSLRFVL 463

Query: 689 SFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRD 743
             A+ +P ++  D   + Q+  N++ NAI FT  G ++++       EE    ++ +VRD
Sbjct: 464 EVASEVPAVVVSDEARLSQVLFNLVGNAIKFTSRG-EVVLRVWMEEAEEGRAKIVFQVRD 522

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TG+G+   EL +  + F Q+      R +G+GLGL +A+ +V+   G+  + S   KG+ 
Sbjct: 523 TGIGIPREELPRVFERFHQVDQGVTRRFQGSGLGLSIARDLVELMGGRIEVESEEGKGSC 582

Query: 804 IEIIFP 809
             +  P
Sbjct: 583 FTVRIP 588


>gi|298527923|ref|ZP_07015327.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298511575|gb|EFI35477.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 1346

 Score =  340 bits (873), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 125/840 (14%), Positives = 266/840 (31%), Gaps = 131/840 (15%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTW 143
            +     G     +  L +  G  + + +   + D++  L  DP     +  LL      
Sbjct: 33  IFKTTLEGRFIYANRALAEIFGYSSPRDLIASVTDIATQLFADPVQWEEVRHLLDLHGIV 92

Query: 144 -YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
              +      +GT        +   +     + S F+GF +  ++             + 
Sbjct: 93  KNYECRQIRRDGT--VFWASGSIQAVTDAKGKASHFQGF-VSDISDRKLAQDQWQSTFEA 149

Query: 203 KFSHLHEIKKGHS--SVEKEKYDIFSQQSPPPHLR----MKNKVSSLTEYYAHKDDVLKT 256
               +  +   H    V     +    Q      R    + + +S+  ++  H   +   
Sbjct: 150 LPDLIALVDNDHRILRVNNAMAEHLGLQPREIEGRFCYEVVHGLSAPPDFCPHSRTLRSR 209

Query: 257 EKYPLLTSEES--------SLPEQEDFHTINLNQYTKKQYF----------GTLQNNSKE 298
            +      EE         + P ++    I  + +  +               ++ + + 
Sbjct: 210 NEENAEVFEERLHGYFNVTTTPFRDAGGFILGSVHVARDITIQKHKHDVMQQAIEESRRS 269

Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKC--------------------PIPFFVYSH 338
                S            +  +      D                          F+ S 
Sbjct: 270 EAHLSSMFESARAILTTKDFPSAARHIFDSVSSLIGSSAGYVALLADDGRENELVFLESG 329

Query: 339 GNLFYANPS-------------------FLLLTKYKSVDDIEIAGG--LSTLLDAPKLSD 377
           G   Y +P+                   F          D    G   L  +L AP + D
Sbjct: 330 GRPCYVDPALPMPIRGLRAQSYSLNAVVFENDFMNSQWMDFMPPGHVQLDNVLFAPLVLD 389

Query: 378 NNAIKPVMLYRSDRTCIAASARL---------------HTIQWNRENSLAMTFIPFEKAN 422
              +  + L           A                   ++   EN  ++ +    +  
Sbjct: 390 EKTVGIIGLANKPGGFTEKDANAAKSFGDLAAIALRNSRNLEKLAENEQSLNYRLDLQRL 449

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
                M    +  ++++   ++      +M+L          I   + E  +++      
Sbjct: 450 LMDLAMDFLNVPTDNLNQATDRA-----LMRLGQFTGTDRVYIFYYDYENHVMTNTHEWC 504

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNH-----------------YLTEILSLDLRQTL 525
              G   +    +   + L      + N                  +   +   D++  L
Sbjct: 505 A-PGIEPQIDNLQKIPLALNPEHVRMHNEGRPFYLPDVSKLDNNDPFRLHLEFQDIQSLL 563

Query: 526 EKITLGSTKEEKLL---SLRIIIKKLPFSSCYSLTM----HDISEWKQEKNKLSHAKKIA 578
               +G       +   S+R               +     +    +  +  L  A + A
Sbjct: 564 AIPLMGPEGCLGFVGLDSVRSTRTWSDSEINLFALLAKLLVNAQLRQSREQDLKDAMEQA 623

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
           E  +  KS+FLA +SHEIRTP+  +IG ++++ +    P         A  I  SG  +L
Sbjct: 624 EIATQAKSEFLANMSHEIRTPMNGVIGMTDLLLDTELRP----EQRSLAESIQSSGEALL 679

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RI 697
            ++ND+LD SKIE+G++ L     +L   + +  SL+ + A+EK + +      ++P ++
Sbjct: 680 ALINDILDFSKIEAGRLELESVNFNLHYLLEDLASLMAVRADEKGLELICLPDPDVPAQV 739

Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----------VILRVRDTGVG 747
             D   ++QI  N++ NAI FT  G  +++     +  +          ++  V+DTG+G
Sbjct: 740 QGDPGRLRQILTNLVGNAIKFTHQGEVVVMVQKSEARSQKSDNSADDVLLLFTVQDTGIG 799

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           +   +++     F Q+  S   +  GTGLGL +++ + +   G+  + S   +G      
Sbjct: 800 VPEDKIDLLFNKFSQVDASTTRKFGGTGLGLAISRQLAEMMGGEVGVQSEYGRGCKFWFT 859



 Score =  104 bits (260), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 36/279 (12%), Positives = 76/279 (27%), Gaps = 22/279 (7%)

Query: 316 DEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
                   + +DK  I  F     G   YAN +   +  Y S  D+     ++ +     
Sbjct: 16  QSVLPDAQDILDKATIGIFKTTLEGRFIYANRALAEIFGYSSPRDL--IASVTDIATQLF 73

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
                  +   L            R              +       +   +     G  
Sbjct: 74  ADPVQWEEVRHLLDLHGIVKNYECRQIR---RDGTVFWASGSIQAVTDAKGKASHFQGFV 130

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
            +  D ++ +        Q  S  EA  D IA+++ +  IL  N A+++  G    +I  
Sbjct: 131 SDISDRKLAQ-------DQWQSTFEALPDLIALVDNDHRILRVNNAMAEHLGLQPREIEG 183

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554
           +     +   +        +  L     +                   +       +  +
Sbjct: 184 RFCYEVVHGLSAPPDFCPHSRTLRSRNEE--NAEVFEERLHGYF---NVTTTPFRDAGGF 238

Query: 555 SL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
            L       DI+  K + + +  A + + +  +H S   
Sbjct: 239 ILGSVHVARDITIQKHKHDVMQQAIEESRRSEAHLSSMF 277


>gi|220909777|ref|YP_002485088.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219866388|gb|ACL46727.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 1548

 Score =  340 bits (873), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 127/804 (15%), Positives = 252/804 (31%), Gaps = 90/804 (11%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            +D       I++ L    G      +G  + +V   L     + +  +L+          
Sbjct: 619  LDRELRFVRINQRLADINGVPVEAHLGRTVREVLPDLGNTAESLLRPILETGEPLLNVEL 678

Query: 149  L--WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                P +     V ++   LP+   + +  G     +                 + +   
Sbjct: 679  RGQTPAQPGVERVWME-HFLPLKQDD-QVIGIS--VVCEEITERLQAEKSIADNEARLRG 734

Query: 207  LHEIKKGHSSVEKEKYDIFSQQS------PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
              E              I                 +++   S  +    +   L  E   
Sbjct: 735  FVESNVVGILYGDIYGKIAEANDELLRIIGYTRAELQSGSISWIDLTPPEHLSLDQEAIA 794

Query: 261  LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
                  +  P ++++   + ++      +  +    +ES  ++      S     +E   
Sbjct: 795  EARLRGACTPYEKEYIRKDGSRVPVLVGYSLVGEAREESVAFIL---DLSDRKRDEEALR 851

Query: 321  LTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGG---------LSTLL 370
                 ++    P  V++    +   N     L  Y   + I                   
Sbjct: 852  QLNLLIELSYEPILVWNLEQGIILWNQGCEQLYGYTRTEAIGQNSHQLLQTLHPLPLPDF 911

Query: 371  DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
             A    +      V         +   +R   I+   +  +  T +   +  Q      Q
Sbjct: 912  LAQLEQERQWTGEVTQTTRTGQQVIVESRQQLIETRGQKLVLETNLNITERKQAELEREQ 971

Query: 431  NGIEPEDVDTRI----NKRKMEIEVMQLCSILEATSD----------------------- 463
              +  +    ++               + + L+  ++                       
Sbjct: 972  LLLRVQRYAQQLHGLTQAALAINSASTIPATLDLVTEQAYRIIGCHQAVTSLTLGQNWAQ 1031

Query: 464  ---GIAIIN-----------REGI-ILSTNRAVSKLFGYPVEDILRKPFTVFL--EQNTP 506
                I + +            +G  I +     ++       ++   P         +  
Sbjct: 1032 SIHAIYLSDKYAHWRNYEAKPDGSGIYALVGQFNRPLRLTQTELESHPNWRGFSQAADHH 1091

Query: 507  SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQ 566
              +  +L   L       L  I L    E +       I                 E  +
Sbjct: 1092 PPLRGWLAAPLVGRDGHNLGLIQLSDKYEGEFSEADETILVQLAQMAAVAI-----ENTR 1146

Query: 567  EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
                   A+  AE+ +  K +FLA +SHE+R+PL  I+G+S++++N+ F         + 
Sbjct: 1147 LYQAEQEARAAAERTNRIKDEFLAILSHELRSPLNPILGWSQLLQNRPFDAATT---QQA 1203

Query: 627  ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
               I+R+  L + +++DLLD+++I  GK+N+   PV L   +  AI  V+  A  K I +
Sbjct: 1204 LTTIERNARLQIQLIDDLLDVARILRGKLNMETSPVDLVAVIEAAIDTVKTAALAKSIHL 1263

Query: 687  RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----------- 735
                A  I  +  D   ++QI  N+LSNAI FTP GG++ +       E           
Sbjct: 1264 ELDLAQ-IGPVCGDATRLQQIVWNLLSNAIKFTPQGGRVEVRLGEVEGEAGTDQTVPSPH 1322

Query: 736  EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
               L V DTG G++   L    + F Q   S   +  G GLGL + +++V+A+ G  +  
Sbjct: 1323 FAKLTVTDTGKGISPDFLPHIFESFRQEDASTTRKYGGLGLGLAIVRSLVEAHGGTIWAD 1382

Query: 796  ST-PAKGTLIEIIFPLYDTSHPHD 818
            S    +G    + FPL   +   +
Sbjct: 1383 SAGEGQGATFTVCFPLLTPTPAQE 1406



 Score =  135 bits (339), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 56/530 (10%), Positives = 138/530 (26%), Gaps = 38/530 (7%)

Query: 69  DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM--IGMRLCDVSDILH 126
           +SE  F          F     A   +  +S    +  G    ++        +      
Sbjct: 336 NSEERFRQLAENINAVFWIREAAEDRVSYVSPAYQRLWGLNPEELYTDPQVWVNYIHPDD 395

Query: 127 IDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHV 186
            +              +  +  +   +G+     +     P+Y +  +   +R  GI   
Sbjct: 396 REVVAQAFAQKAAIGQFDQEYRIVLPDGSL--HWVRDRCFPLYDQTGQV--YRFTGIAED 451

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ-------SPPPHLRMKNK 239
                      +  +++      + +  S   +   D   +             L  ++ 
Sbjct: 452 VTATKQVEVALRDSEQRNELAMSVARMFSFEWEPSTDRVRRSSQCHAILPASGILTTEDT 511

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
             +  ++    D          LT E  +          +    + ++    L +   + 
Sbjct: 512 GYNFFQHIHPDDRDRFIALLQSLTPENPTYRTTYRLVGPDQVIVSLEESARALFDAQGKL 571

Query: 300 FEYLSHRNHPSLS-----------AYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPS 347
              +      S             A   +            PI   V          N  
Sbjct: 572 NRLIGIVGDVSERQRMELELQTSKAQLQQQLAELESIYQSAPIGLTVLDRELRFVRINQR 631

Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
              +     V+          L   P L +        +  +    +    R  T     
Sbjct: 632 LADINGV-PVEAHLGRTVREVL---PDLGNTAESLLRPILETGEPLLNVELRGQTPAQPG 687

Query: 408 -ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
            E      F+P ++ +Q    +  + +  E  +    ++ +     +L   +E+   GI 
Sbjct: 688 VERVWMEHFLPLKQDDQ---VIGISVVCEEITERLQAEKSIADNEARLRGFVESNVVGIL 744

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTV--FLEQNTPSVMNHYLTEILSLDLRQT 524
             +  G I   N  + ++ GY   ++     +          S+    + E         
Sbjct: 745 YGDIYGKIAEANDELLRIIGYTRAELQSGSISWIDLTPPEHLSLDQEAIAEARLRGACTP 804

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSCY-SLTMHDISEWKQEKNKLSH 573
            EK  +   K+   + + +    +  +       + D+S+ K+++  L  
Sbjct: 805 YEKEYI--RKDGSRVPVLVGYSLVGEAREESVAFILDLSDRKRDEEALRQ 852



 Score =  120 bits (302), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 70/562 (12%), Positives = 162/562 (28%), Gaps = 44/562 (7%)

Query: 41  KENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISE 100
            E+       +    D  Q    N   +     F F+  P T R                
Sbjct: 449 AEDVTATKQVEVALRDSEQR---NELAMSVARMFSFEWEPSTDRV--------RRSSQCH 497

Query: 101 ELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVP 160
            +    G    +  G            D    +   L  +N    +TT   +    + V 
Sbjct: 498 AILPASGILTTEDTGYNFFQHIHPDDRDRFIALLQSLTPENP-TYRTTYRLVGPDQVIVS 556

Query: 161 IDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR-ALGKRLDKKFSHLHEIKKGHSSV-- 217
           ++ +A  ++    + +  R  GIV            L     +    L E++  + S   
Sbjct: 557 LEESARALFDAQGKLN--RLIGIVGDVSERQRMELELQTSKAQLQQQLAELESIYQSAPI 614

Query: 218 --------EKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
                    +                  +   ++ E      +  ++   P+L + E  L
Sbjct: 615 GLTVLDRELRFVRINQRLADINGVPVEAHLGRTVREVLPDLGNTAESLLRPILETGEPLL 674

Query: 270 PEQEDFHTINL---NQYTKKQYFGTLQNNSKESFEYL--SHRNHPSLSAYFDEGENLTPE 324
             +    T       +   + +    Q++       +               + E     
Sbjct: 675 NVELRGQTPAQPGVERVWMEHFLPLKQDDQVIGISVVCEEITERLQAEKSIADNEARLRG 734

Query: 325 TVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
            V+   +       +G +  AN   L +  Y   +    +G +S +   P    +   + 
Sbjct: 735 FVESNVVGILYGDIYGKIAEANDELLRIIGYTRAEL--QSGSISWIDLTPPEHLSLDQEA 792

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
           +   R    C         I+ +      +         +            +  D + +
Sbjct: 793 IAEARLRGACTPYEKEY--IRKDGSRVPVLVGYSLVGEAREESVAFIL----DLSDRKRD 846

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
           +  +     QL  ++E + + I + N E  I+  N+   +L+GY   + + +     L+ 
Sbjct: 847 EEALR----QLNLLIELSYEPILVWNLEQGIILWNQGCEQLYGYTRTEAIGQNSHQLLQT 902

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
             P  +  +L ++   + + T E      T ++ ++  R  + +         T  +I+E
Sbjct: 903 LHPLPLPDFLAQL-EQERQWTGEVTQTTRTGQQVIVESRQQLIETRGQKLVLETNLNITE 961

Query: 564 WKQEKNKLSHAKKIAEKESSHK 585
            KQ + +        ++ +   
Sbjct: 962 RKQAELEREQLLLRVQRYAQQL 983


>gi|99078255|ref|YP_611513.1| periplasmic sensor hybrid histidine kinase [Ruegeria sp. TM1040]
 gi|99035393|gb|ABF62251.1| periplasmic sensor hybrid histidine kinase [Ruegeria sp. TM1040]
          Length = 741

 Score =  340 bits (873), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 97/364 (26%), Positives = 170/364 (46%), Gaps = 13/364 (3%)

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           +  AT D + +++  G  +S N A  +L G        +P           ++      +
Sbjct: 247 MFYATQDPVILVDAGGQFVSANPAARQLIG-DRIPDYGEPIEQL--PEVGPLVKDL---V 300

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKK 576
            +  L +       G   + + + +   I+       + +++ DI+E ++    L  A  
Sbjct: 301 KAGGLGKPGPIRLAGRAFDPRAVPIDSPIQAQIPLLGWCISLVDITERERAAEALREALS 360

Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
           +AE  +  K+ FLA VSHEIRTPL  ++G + V+   +     +    E+   I+ SG +
Sbjct: 361 LAEAANRAKTQFLANVSHEIRTPLNGVLGMASVLGETKL----DEEQQEFLQVIEDSGQV 416

Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696
           +L  + D+LD+SK+E+GKM L  +P +L  A+  A +L    A EK I +     +++PR
Sbjct: 417 LLTTIGDVLDLSKVEAGKMTLETKPFTLRNALEGARALFSARAKEKGIGLHLEMHDDLPR 476

Query: 697 I-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL-RVRDTGVGMTNYELE 754
           + L D    +Q+  N++SNAI FT +G  + IS     N  ++L RV DTG G+     +
Sbjct: 477 VILGDDHRFRQVVHNLVSNAIKFTETGA-VTISAAPAENGSILLVRVSDTGPGIPAEARD 535

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
              +PF Q+      +  GTGLGL +++ +     G   +     +G   EI  PL   +
Sbjct: 536 MIFQPFQQVEGGDARKFGGTGLGLSISRQLCHLMGGSLQVADDEPQGATFEIRLPLLPAN 595

Query: 815 HPHD 818
              +
Sbjct: 596 EAQE 599



 Score = 38.9 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 38/279 (13%), Positives = 64/279 (22%), Gaps = 30/279 (10%)

Query: 67  YLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH 126
                 T +F      V      DA G     +    + IG+      G  +  +     
Sbjct: 239 TAAQGRTLMFYATQDPVILV---DAGGQFVSANPAARQLIGDRIPD-YGEPIEQL----- 289

Query: 127 IDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVH- 185
            +    + DL+K      GK     + G       D  A+PI S  +      G+ I   
Sbjct: 290 PEVGPLVKDLVKAGGL--GKPGPIRLAGRAF----DPRAVPIDSPIQAQIPLLGWCISLV 343

Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE 245
                       +         +  K    +    +                     L  
Sbjct: 344 DITERERAAEALREALSLAEAANRAKTQFLANVSHEIRTPLN-------------GVLGM 390

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
                +  L  E+   L   E S           L+    +    TL+         L  
Sbjct: 391 ASVLGETKLDEEQQEFLQVIEDSGQVLLTTIGDVLDLSKVEAGKMTLETKPFTLRNALEG 450

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYA 344
                 +   ++G  L  E  D  P    +         
Sbjct: 451 ARALFSARAKEKGIGLHLEMHDDLPR-VILGDDHRFRQV 488


>gi|322806796|emb|CBZ04365.1| phosphate regulon sensor protein PhoR (SphS) [Clostridium botulinum
           H04402 065]
          Length = 522

 Score =  340 bits (873), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 88/392 (22%), Positives = 171/392 (43%), Gaps = 33/392 (8%)

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
            ++            + ++  +   ++  +  +L +IL++   G+  I++E  ++  N  
Sbjct: 161 EDEIGRLGRTFNAMADILENSLV--EVRDKQNRLEAILKSMDSGVVAIDKEFKVIMINPY 218

Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
            +KLFG   + I         +     V+         + +    ++     T +     
Sbjct: 219 ANKLFGIKRDIIGENLMDNIRDFELEKVLRDKEPGYKEIGILWPEKRTLRVKTTD----- 273

Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
               I     +      + DI++ K+ +              + +  F+A VSHE++TPL
Sbjct: 274 ----IISKYDNIGTVAVVQDITDIKKLE--------------NMREQFVANVSHELKTPL 315

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           T+I GFSE +K      + + +  E +   I+   + +  ++ND+L +S IE  K  L  
Sbjct: 316 TSIKGFSETLKY-----VDDKKNREKFLQIINDEADRLTRLINDILVLSNIEKQKQELIK 370

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719
           E + L+E + +   LV+  A +K I I       +P ++ +     Q+ +N++ NAI +T
Sbjct: 371 EKIDLNELIEKVYCLVKKSAEDKNIRINI-VGEKVPLLIGNKDKYNQMIINLVDNAIKYT 429

Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
              G + I T       ++  V DTGVG++   L++  + F ++  ++     GTGLGL 
Sbjct: 430 EPNGYVSIGTK-QDKGNIVFWVEDTGVGISEEHLDRIFERFYRVDKARSRAEGGTGLGLA 488

Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
           + K +V +  GK  + S P KGT   +  PL 
Sbjct: 489 IVKHIVLSINGKIEVKSQPKKGTKFIVKIPLS 520


>gi|313682762|ref|YP_004060500.1| multi-sensor hybrid histidine kinase [Sulfuricurvum kujiense DSM
           16994]
 gi|313155622|gb|ADR34300.1| multi-sensor hybrid histidine kinase [Sulfuricurvum kujiense DSM
           16994]
          Length = 977

 Score =  340 bits (873), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 99/381 (25%), Positives = 180/381 (47%), Gaps = 13/381 (3%)

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
            + +     + K+  E     +++E+ +  IA++NR+G++++ N    +  G+  ++I  
Sbjct: 242 EDIIQRNELENKLLFEKSINKTLVESANAIIAMLNRDGVMININPYGERFTGFTQQEIAS 301

Query: 495 KPFTV--FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
           +P+    FL       + + ++      + ++ +   +     E++      +       
Sbjct: 302 EPYFWARFLPPEMHDKVVNIISNARKGTITRSFQNAWVSKDGIERMFEWSNALVLDEKGQ 361

Query: 553 --CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
               +    DI+E K+ + +L  AK+ AE  +  K+DFLA +SHEIRTPL  IIG +E++
Sbjct: 362 MQYVTTIGIDITEQKERQLELEKAKEAAETAAKAKADFLANMSHEIRTPLNGIIGLTELV 421

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
                 P    +  ++    + S + +LDI+ND+LD SKIE+GK +L  +P  L+  +  
Sbjct: 422 LKTDLEP----KQRDFLEKSNLSSHALLDIINDILDYSKIEAGKFDLENKPFELNNVIQN 477

Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
            +SL +  A +K I++      N   ++ D   + QI  N++ NA+ FT SG  I I   
Sbjct: 478 IMSLFEFQAVQKGIILTYDIQLNENVMIGDALRLTQILTNLVGNAVKFTESG-HIGIRVI 536

Query: 731 HTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
            T   E    +   V DTG+GM      K  + F Q   S   +  G+GLGL ++K +V 
Sbjct: 537 STDENEEDIRLQFSVEDTGIGMNAEAQNKLFQEFSQADTSITRKYGGSGLGLAISKQLVQ 596

Query: 787 ANMGKFYIFSTPAKGTLIEII 807
              G  ++ S    G+     
Sbjct: 597 MMGGDIWVESEEGIGSRFIFT 617


>gi|312891906|ref|ZP_07751410.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM
           18603]
 gi|311295639|gb|EFQ72804.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM
           18603]
          Length = 1082

 Score =  340 bits (873), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 122/736 (16%), Positives = 263/736 (35%), Gaps = 48/736 (6%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEG 154
             +  + L       A +++G  L D+      +        + +  T   K   +  +G
Sbjct: 227 WCQYDDALAA----DAEQLVGKTLADLQIPGLSN--------MAKTATKTLKPLRFEFQG 274

Query: 155 T-NLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
                   +    P+++ + +F+G      +          +  K  +    +   + K 
Sbjct: 275 LFGNDFWYNATIAPVFTDDLQFTG-NFTLTLTDITELKTTTSKLKENELVLYNEQIVAKI 333

Query: 214 HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE------YYAHKDDVLKTEKYPLLTSEES 267
            S          S  +    +     +              H +D  K + Y     +  
Sbjct: 334 GSWWTHVSGRDISWSNNLFSILEVTDIPPDRSKLNYYISLVHPEDREKAQLYFANLGDNP 393

Query: 268 SLPEQEDFHTINLNQYTKKQYFG-TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
               +    T   N    K   G  +++   +  +        + S    +        +
Sbjct: 394 LNEFEHRLITPKGNLKYFKVVSGYPVKDGQGKVVKMAGIVQDITDSILAHKTIRKNEAEL 453

Query: 327 DKCPIPFFV--YSHGNLF---YANPSFLLLTKYKSVDDIEIAGGLSTL--LDAPKLSDNN 379
            +      +  +    +      +     + +    + ++       L     P    N 
Sbjct: 454 MQVQAIAKIGGWRWDIILNNLAWSDEMYRIYEL-DKEQVKHEDHFKLLLSFVHPDDRPNV 512

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
           A       +  R+ +        I         ++ I  +   +        G   +  D
Sbjct: 513 AGIFKDHLKIVRSFVEY-----RIITPEGKLKYLSLIVGKTLAKDGAIKSILGTLQDQTD 567

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
            +  +   E    +  ++LE  +     ++++G I+  N+ ++ + GY   D++   +  
Sbjct: 568 RKKIEFDFERAENKYKNVLETVNLAAVTLDKQGDIVFCNKHLADIIGYDKVDLIGMNWAD 627

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY--SLT 557
                   + + +   + S           +    +++++S +  +    F      +  
Sbjct: 628 NFVP--AKLQDQFRQWLDSDSFYAQHTSPIICRNGKQRIISWKNTVTHDEFGKIVETTSI 685

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
             DI++ K+ +  L  AK+ AEK S  KS+FL+ +SHEIRTP+ A+IG + ++      P
Sbjct: 686 GEDITDIKKAREALIIAKENAEKSSRFKSEFLSIMSHEIRTPMNAVIGTTNLLLQDNPAP 745

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
               R +EY N +  S N +L+++ND+LD +KIE+GK+ L+  P ++++     +   + 
Sbjct: 746 ----RQLEYLNTLRFSSNNLLELINDILDYNKIEAGKLELYKTPFNINKLAQNILQSFKN 801

Query: 678 YANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT---- 732
            A      +     + IP  ++ D   + Q+  N+LSNA+ FT  G  + +         
Sbjct: 802 KAEANSSYLELKLDDRIPANLIGDQLRLGQVLNNLLSNAVKFTRDG-TVFLKLELEQLRY 860

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
               +   + DTG+G++   ++K   PF Q  NS Q    GTGLGL + K +++ +    
Sbjct: 861 DKVTIKFIIEDTGIGISPENIDKIFDPFTQEYNSTQSDYGGTGLGLAITKRLIELHNSTI 920

Query: 793 YIFSTPAKGTLIEIIF 808
            + S   +GT      
Sbjct: 921 KLVSNIGEGTQFSFSI 936



 Score = 38.9 bits (89), Expect = 3.3,   Method: Composition-based stats.
 Identities = 16/140 (11%), Positives = 32/140 (22%), Gaps = 5/140 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D  G +   ++ L   IG     +IGM   D      +   +     L   + +   T+
Sbjct: 596 LDKQGDIVFCNKHLADIIGYDKVDLIGMNWADNFVPAKLQ--DQFRQWLDSDSFYAQHTS 653

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                     + I       +    +       G           R       +      
Sbjct: 654 PIICRNGKQRI-ISWKNTVTHDEFGKIVETTSIG--EDITDIKKAREALIIAKENAEKSS 710

Query: 209 EIKKGHSSVEKEKYDIFSQQ 228
             K    S+   +       
Sbjct: 711 RFKSEFLSIMSHEIRTPMNA 730


>gi|83310940|ref|YP_421204.1| hypothetical protein amb1841 [Magnetospirillum magneticum AMB-1]
 gi|82945781|dbj|BAE50645.1| hypothetical protein [Magnetospirillum magneticum AMB-1]
          Length = 1616

 Score =  340 bits (873), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 121/720 (16%), Positives = 235/720 (32%), Gaps = 30/720 (4%)

Query: 100  EELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGKTTLWPIEGTNLY 158
                  +   A + I +   D++  +++  +   I +L   Q                  
Sbjct: 407  RRFAAPLEALAQESIRIGRLDLARPVNVASDLGEIQELSAAQEAMREALLSSTTRLEEAN 466

Query: 159  VPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVE 218
              ++     +  R  E    +       +R      A           +           
Sbjct: 467  TTLEAR---VLERTEELEHSK--STAEWSRQLMRDMADSLPCAAFRFEVAPSGDQSFRFI 521

Query: 219  KEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTI 278
              K +     +P   +   +                  E+  L  S  + L    + H  
Sbjct: 522  SAKAEEIWGYTPDELINEPDLRFWRIHPGDLAKAHQALEEALLEGSSTNQLYRVMNRHGE 581

Query: 279  NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH 338
                 T+             +  +L         A                 +   V   
Sbjct: 582  ARWIETRAMASRLADGTRVWNGYWLDVTEREEALAAMTGAMEEQSAIFQSAGLGIAVIRD 641

Query: 339  GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398
             ++  +N S   L  Y   +    + G+  +       +    +      +         
Sbjct: 642  RHIVRSNKSLAQLLGYGPSELDGQSTGV--VFANEGDFE-RMGREAYPALAQGETFQGDW 698

Query: 399  RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458
                 +     +           +    +     +  +  D R  + +++    +L ++ 
Sbjct: 699  E---YRRKNGTTFWGRTSGRAI-DSGDLSKGSVWVCDDITDRRNWEHRLQQAEERLRALT 754

Query: 459  EATSDGIAIINREGI---ILSTNRAVSKLFGYPVEDILRK--PFTVFLEQNTPSVMNHYL 513
             +    +  +  EG         R V  + G   + +L         +       +   +
Sbjct: 755  NSVPAAVFELRNEGEDFWFTFMGRQVRGILGVGADQLLANAGRLYGTVRDGDRETLESVI 814

Query: 514  TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-YSLTMHDISEWKQEKNKLS 572
               L   +R + +        EE+ + +  +          ++    D+S  K  +  L+
Sbjct: 815  EGALEQGVRFSTQYRLDAP-GEERWVRMEAVPIVAQAGGGTWAGFFQDVSAEKLAEAALT 873

Query: 573  HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
             AK++AE  +  KSDFLA +SHEIRTP+ AIIG S +       P    R  +Y   I  
Sbjct: 874  RAKELAEDATRMKSDFLANMSHEIRTPMNAIIGMSHLALKTELTP----RQHDYVKKIQS 929

Query: 633  SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
            +G  +L I+ND+LD SKIE+GK+ +      LD+ +    +L+      K + +     +
Sbjct: 930  AGQHLLGIINDILDFSKIEAGKLAVEHTDFELDKVLDNIANLLTEKTRAKSLELVFDIPS 989

Query: 693  NIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVG 747
             +PR ++ D   + QI +N  +NA+ FT   G+I I        E    +   VRDTG+G
Sbjct: 990  EVPRTLVGDSLRLGQILINYANNAVKFT-ENGEIDIIARVKERSETEVLLYFAVRDTGIG 1048

Query: 748  MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
            +T  +  +  + F Q   S   +  GTGLGL ++K + +   G+  + S   KG+     
Sbjct: 1049 ITAEQAARLFQSFEQADTSTTRKFGGTGLGLAISKRLAELMGGEVGVESEYGKGSTFWFT 1108



 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/384 (8%), Positives = 99/384 (25%), Gaps = 28/384 (7%)

Query: 84  RFTWNIDAHGYLKEISEELPKTIGNYAFKMI---GMRLCDVSDILHIDPNNHIGDLLKRQ 140
           RF          + IS +  +  G    ++I    +R   +        +  + + L   
Sbjct: 507 RFEVAPSGDQSFRFISAKAEEIWGYTPDELINEPDLRFWRIHPGDLAKAHQALEEALLEG 566

Query: 141 NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
           ++      +    G   ++     A  +    R ++G+             +  A     
Sbjct: 567 SSTNQLYRVMNRHGEARWIETRAMASRLADGTRVWNGYW-----LDVTEREEALAAMTGA 621

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP-----PHLRMKNKVSSLTEYYAHKDDVLK 255
            ++ S + +      +V ++++ + S +S           +  + + +        + + 
Sbjct: 622 MEEQSAIFQSAGLGIAVIRDRHIVRSNKSLAQLLGYGPSELDGQSTGVVFANEGDFERMG 681

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN---NSKESFEYLSHRNHPSLS 312
            E YP L   E+      ++   N   +  +     + +   +    +      +  +  
Sbjct: 682 REAYPALAQGET-FQGDWEYRRKNGTTFWGRTSGRAIDSGDLSKGSVWVCDDITDRRNWE 740

Query: 313 AYFDEGENLTPETVDKCPIPFFVYS----HGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
               + E       +  P   F            +       +    +   +  AG    
Sbjct: 741 HRLQQAEERLRALTNSVPAAVFELRNEGEDFWFTFMGRQVRGILGVGADQLLANAG---R 797

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
           L    +  D   ++ V+    +             + +         +            
Sbjct: 798 LYGTVRDGDRETLESVI----EGALEQGVRFSTQYRLDAPGEERWVRMEAVPIVAQAGGG 853

Query: 429 PQNGIEPEDVDTRINKRKMEIEVM 452
              G   +    ++ +  +     
Sbjct: 854 TWAGFFQDVSAEKLAEAALTRAKE 877


>gi|82702619|ref|YP_412185.1| PAS/PAC sensor hybrid histidine kinase [Nitrosospira multiformis
           ATCC 25196]
 gi|82410684|gb|ABB74793.1| PAS/PAC sensor hybrid histidine kinase [Nitrosospira multiformis
           ATCC 25196]
          Length = 835

 Score =  340 bits (873), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 100/551 (18%), Positives = 195/551 (35%), Gaps = 30/551 (5%)

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
           S     D     ++         T    ++                   E E    + ++
Sbjct: 173 SREVSPDAKQTGVSGVLVTVTETTELVRARAHEAKKIRFKEALAEQALRESEQRFCQALE 232

Query: 328 KCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
              +    +     +  AN +FL ++ +   D+   A     L+        +  +    
Sbjct: 233 IETVGIIFFDSENRITEANDAFLEMSGFSRDDERAGALRCDELIPPEW--RMSTSRAAEE 290

Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
            ++          L   + +     A+  +     N+            +  + +  +  
Sbjct: 291 LKAMGRVAPHEKELF--RKDGSRWWALIAMKQLLGNEA------VAYVVDITERKRVEHS 342

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
           +     +  ++ EA+   I  ++ +G  +  N+    +FG  +E+++   +   L  +  
Sbjct: 343 LRESEARFRALAEASPALIWQVDPQGNAVYLNQRYQYMFGKSLEELMPTGWRELLHPDDA 402

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK----LPFSSCYSLTMHDIS 562
                     L       L +     T E +   L+             + +     DI+
Sbjct: 403 PAYVAAFERALHDRAH--LRQRVRARTAEGEWRWLKSYALPWFTVRDEYAGHVGISIDIT 460

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E    +  L        +    K +FLA ++HE+R PL  I     +I     GP G   
Sbjct: 461 EAVAAETAL-------LEADRRKDEFLATLAHELRNPLAPIASALTLIA----GPDGAAE 509

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                  I+R  N ++ +V+DLL+IS+I SGK+ L  +P  L   +  A         EK
Sbjct: 510 IPRLLPVINRQVNYMVRLVDDLLEISRITSGKVELRQKPTDLAIVLRNAAEASMEQIREK 569

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
            + +  S  +    +  D   ++QI  N+L+NA+ +T  GG+I + T    + + ++ V+
Sbjct: 570 ELELSISITDTPLIVYGDTVRLEQIFANLLNNAVRYTGRGGKIWL-TARQEDHKAVVSVK 628

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKG 801
           D G+G+    L +    F Q   S     EG G+GL L   +V  + G     S    KG
Sbjct: 629 DNGIGILPGMLPRLFDMFAQERRSGMGTQEGLGIGLNLVDRLVQMHGGSVEASSEGKDKG 688

Query: 802 TLIEIIFPLYD 812
           +   +  PL +
Sbjct: 689 SEFTVRLPLSE 699



 Score = 78.5 bits (192), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 42/400 (10%), Positives = 101/400 (25%), Gaps = 46/400 (11%)

Query: 99  SEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY--GKTTLWPIEGTN 156
           ++     +G      +G  + +    +          +++R+ ++    +  +    G+ 
Sbjct: 94  NDGYRNLMGAKHPDGLGQPVSECWPEVWHFLAPICEGVMERRQSFSFDDQPLVINRTGSP 153

Query: 157 LYVPIDLAALPIYSRNREF----------SGFRGFGI-VHVNRVDND------------- 192
                 L   P+      F          +G  G  + V                     
Sbjct: 154 EEAFFKLTYSPVPDIKDSFSREVSPDAKQTGVSGVLVTVTETTELVRARAHEAKKIRFKE 213

Query: 193 --PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP----PHLRMKNKVSSLTEY 246
                  +  +++F    EI+         +  I              R   +  +L   
Sbjct: 214 ALAEQALRESEQRFCQALEIETVGIIFFDSENRITEANDAFLEMSGFSRDDERAGALRCD 273

Query: 247 YAHKDDVL--KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
                +     +     L +     P +++    + +++        L  N   ++  + 
Sbjct: 274 ELIPPEWRMSTSRAAEELKAMGRVAPHEKELFRKDGSRWWALIAMKQLLGNEAVAY-VVD 332

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIA 363
                 +     E E       +  P   + V   GN  Y N  +  +   KS++++   
Sbjct: 333 ITERKRVEHSLRESEARFRALAEASPALIWQVDPQGNAVYLNQRYQYMFG-KSLEELMPT 391

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
           G    LL         A     L+          AR    +W       +          
Sbjct: 392 GWRE-LLHPDDAPAYVAAFERALHDRAHLRQRVRARTAEGEWR-----WLKSYALPWFTV 445

Query: 424 FPENMPQNGIEPEDVDTRINKRKM---EIEVMQLCSILEA 460
             E     GI  +  +    +  +   +    +  + L  
Sbjct: 446 RDEYAGHVGISIDITEAVAAETALLEADRRKDEFLATLAH 485



 Score = 71.6 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 31/254 (12%), Positives = 68/254 (26%), Gaps = 12/254 (4%)

Query: 69  DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID 128
           +SE  F            W +D  G    +++      G    +++     ++       
Sbjct: 345 ESEARFRALAEASPA-LIWQVDPQGNAVYLNQRYQYMFGKSLEELMPTGWRELLHPDDAP 403

Query: 129 PN-NHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187
                    L  +     +      EG   +  +   ALP ++   E++G  G  I    
Sbjct: 404 AYVAAFERALHDRAHLRQRVRARTAEGE--WRWLKSYALPWFTVRDEYAGHVGISI--DI 459

Query: 188 RVDNDPRALGKRLDKK-----FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS 242
                        D++      +  HE++   + +      I          R+   ++ 
Sbjct: 460 TEAVAAETALLEADRRKDEFLATLAHELRNPLAPIASALTLIAGPDGAAEIPRLLPVINR 519

Query: 243 LTEYYAHK-DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301
              Y     DD+L+  +      E    P        N  + + +Q        S    +
Sbjct: 520 QVNYMVRLVDDLLEISRITSGKVELRQKPTDLAIVLRNAAEASMEQIREKELELSISITD 579

Query: 302 YLSHRNHPSLSAYF 315
                   ++    
Sbjct: 580 TPLIVYGDTVRLEQ 593



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/242 (9%), Positives = 57/242 (23%), Gaps = 16/242 (6%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLC--DVSDILHIDPNNHIGDLLKR-QNTWYGK 146
           D+   + E ++   +  G          L   ++         +   + LK        +
Sbjct: 242 DSENRITEANDAFLEMSGFSRDDERAGALRCDELIPPEWRMSTSRAAEELKAMGRVAPHE 301

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
             L+  +G+  +  I +          +  G      V             +  + +F  
Sbjct: 302 KELFRKDGSRWWALIAMK---------QLLGNEAVAYVVDITERKRVEHSLRESEARFRA 352

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDV-LKTEKYPLL 262
           L E           + +               ++  + +      H DD       +   
Sbjct: 353 LAEASPALIWQVDPQGNAVYLNQRYQYMFGKSLEELMPTGWRELLHPDDAPAYVAAFERA 412

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
             + + L ++    T        K Y         E   ++      + +   +      
Sbjct: 413 LHDRAHLRQRVRARTAEGEWRWLKSYALPWFTVRDEYAGHVGISIDITEAVAAETALLEA 472

Query: 323 PE 324
             
Sbjct: 473 DR 474


>gi|144900968|emb|CAM77832.1| sensor histidine kinase protein [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 845

 Score =  340 bits (873), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 123/733 (16%), Positives = 253/733 (34%), Gaps = 37/733 (5%)

Query: 98  ISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL---LKRQNTWYGKTTLWPIEG 154
            S  L   +     + +   L DV           +      L+ +   +          
Sbjct: 124 CSRRLAVLL--TLPRGLDSSLEDVLACFDPHDGLRLETAIGVLRDEGQAFEVDLTLSAGS 181

Query: 155 TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN-RVDNDPRALGKRLDKKFSHLHEIKKG 213
             +      AA P      +   FR      V                     L +    
Sbjct: 182 RRIRAMGVRAASPAGDMLADLVWFRDVSDSAVAVDDLARSLQALAADATYLKALIDTLPM 241

Query: 214 HSSVEKEKYDIFSQQSPPPHL--RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271
              +  E   +                + +   +     DD ++  +     +  +  P 
Sbjct: 242 PVWLRDEDLSVLMVNKAYAAAVEATSAEAAVQAQVELASDDHVREARALAARARAAGEPR 301

Query: 272 QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP---ETVDK 328
              FH +   +                        +H  +    ++  +      E +++
Sbjct: 302 SASFHLVLAGERRLAHITEMPLEVGDTLLTAGFIEDHTRVEELQEQLSHHVSAQVEVLER 361

Query: 329 CPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
                 +++    L + N +F  L + +  D +E       ++DA +             
Sbjct: 362 LSTAIAIFTTDTRLAFFNTAFSRLWRLER-DWLENQPTYGAVMDALRDRRLLPEAADYRA 420

Query: 388 RSDRTCIAASARLHTI----QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
             +       + +  I          +L     P                  +  DT   
Sbjct: 421 LKEEELRRFISLIDPIETLMHLPDGRTLRRVVSPHP-------YGGLIFTYEDFTDTLAM 473

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
           +R     +    + L+   +G+A+   +  +  +N A ++++G  V+D+  +P    L +
Sbjct: 474 ERSFNTAMAVQRATLDHLHEGLAVFGDDRRLKLSNPAFARMWGLSVDDLAGEPHLNELVE 533

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL-------LSLRIIIKKLPFSSCYSL 556
                         +    +      +G  +  +        + L      LP  +    
Sbjct: 534 RLRPYFEGRPDRASTWAPARERLLALVGERRGGEWRLERQDGMILDCASVPLPDGASLLA 593

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            + D+++  + +  L    +      + KS+F++ VS E+  PLT IIGF+E++ +  FG
Sbjct: 594 FL-DVTDTARVERALIERNEALAAADTLKSEFMSNVSAEVAKPLTTIIGFAEMLDSDYFG 652

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
            L   R  +Y   I  +GN +  ++ D+LD++ IE+G + L  + V +   +S  + LV+
Sbjct: 653 KLSK-RQHDYMKGIVEAGNALKSLIADILDLAAIEAGHLTLELDTVDIHPMLSSVLGLVR 711

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
               EK++ +      ++  I+AD R ++Q+  N++ NA+ +TP+GG I +        E
Sbjct: 712 ERVREKKLQLDFDCPLDMGWIVADQRRLRQVMFNLIGNAVKYTPNGGAIAVRAERRD-GE 770

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           V L V DTG G+   ++E+  K F +         +G GLGL L +  V+ + G   + S
Sbjct: 771 VALIVADTGPGIPPEDMERVFKSFVRT---IHDGQDGAGLGLALVRRFVELHGGTVELDS 827

Query: 797 TPAKGTLIEIIFP 809
            P +GT + +  P
Sbjct: 828 VPGQGTTVTVRLP 840



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/386 (10%), Positives = 102/386 (26%), Gaps = 27/386 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            W  D    +  +++     +   + +       +++   H+     +    +       
Sbjct: 243 VWLRDEDLSVLMVNKAYAAAVEATSAEAAVQAQVELASDDHVREARALAARARAAGEPRS 302

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
            +    + G      I    L +             G +  +    + +           
Sbjct: 303 ASFHLVLAGERRLAHITEMPLEVGDT------LLTAGFIEDHTRVEELQEQLSHHVSAQV 356

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHL-RMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
            + E      ++      +    +    L R++         Y    D L+  +     +
Sbjct: 357 EVLERLSTAIAIFTTDTRLAFFNTAFSRLWRLERDWLENQPTYGAVMDALRDRRLLPEAA 416

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES----------FEYLSHRNHPSLSAY 314
           +  +L E+E    I+L    +           +            F Y    +  ++   
Sbjct: 417 DYRALKEEELRRFISLIDPIETLMHLPDGRTLRRVVSPHPYGGLIFTYEDFTDTLAMERS 476

Query: 315 FDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTL---L 370
           F+    +   T+D       V+     L  +NP+F  +    SVDD+     L+ L   L
Sbjct: 477 FNTAMAVQRATLDHLHEGLAVFGDDRRLKLSNPAFARMWGL-SVDDLAGEPHLNELVERL 535

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
                   +        R     +    R    +  R++ + +        +        
Sbjct: 536 RPYFEGRPDRASTWAPARERLLALVGERRGGEWRLERQDGMILDCASVPLPDGAS----- 590

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCS 456
                +  DT   +R +      L +
Sbjct: 591 LLAFLDVTDTARVERALIERNEALAA 616


>gi|288957454|ref|YP_003447795.1| two-component sensor histidine kinase [Azospirillum sp. B510]
 gi|288909762|dbj|BAI71251.1| two-component sensor histidine kinase [Azospirillum sp. B510]
          Length = 545

 Score =  340 bits (873), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 110/537 (20%), Positives = 216/537 (40%), Gaps = 16/537 (2%)

Query: 282 QYTKKQYFGTLQNNSKESFEYLSHRNH----PSLSAYFDEGENLTPETVDKCPIPFFVYS 337
             +        ++   +  +            +L+      +      ++  P+      
Sbjct: 1   MPSDDCRQAATRDAQGDPGQADPGHPDLDDLIALAKLLRVSKARYRTLLEAVPVGILHAD 60

Query: 338 -HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA 396
             G + + N     +T     D +  AG L  +    +       +            + 
Sbjct: 61  AGGRVLFVNSRLAGITGLSP-DRLLGAGWLDAVHPEDRARVAADWRIEPAGEGRSAPRST 119

Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
             R H           +            E         +  +       + +   +   
Sbjct: 120 DFRFHDPDGEGAERRVLCQRVAL------EEGGFIATVTDVSEYVHTANALRLSEARNEG 173

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           IL+  ++ I  I+  GI++S NRA   +FG   +D+L +P    +             + 
Sbjct: 174 ILDTVAEAILTIDEAGILISFNRAAEAMFGVVADDVLWRPLGRLIPLADLLEAGGERLDF 233

Query: 517 LSLDLRQTLEKIT--LGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKNKLS 572
                   + +         +     + + +          Y+  + D++E ++ + +L 
Sbjct: 234 APGQTMALVTRDRAAEAERADGTRFPVELSVSASEVEGRRLYTAILRDVTERRRAEAELL 293

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
            AK  AE     KS F+A +SHE+RTPL A+IGFS++++ Q     G+ + +   + I +
Sbjct: 294 AAKAAAEAGDRAKSTFIAVMSHELRTPLNAVIGFSQLLELQAGDAAGDGQLLSCVDAIGQ 353

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
           +G  +L I++D+LD++++ESG ++L    V L   V   ++ ++  A  + + +  +   
Sbjct: 354 AGRRLLAIIDDILDMARVESGGLSLSEGVVDLFALVERCVADLRFQATRQGVTVSVALDG 413

Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752
           ++P +  D R + Q   N+LSNAI F+  G ++ ++     +  V L VRD GVGM   +
Sbjct: 414 DLPPLRGDWRRLGQALGNLLSNAIKFSHPGAEVALAAAIAEDGWVELSVRDQGVGMRPED 473

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +++A+ PF QI  +     EG GLGLPLA+ +V+A+ G   + S P  G    +  P
Sbjct: 474 IDRALAPFAQIDQAATHHHEGVGLGLPLARRLVEAHGGVLRLDSAPGLGCTATLRLP 530



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/235 (7%), Positives = 49/235 (20%), Gaps = 17/235 (7%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH---IDPNNHIGDLLKRQ-NTWYG 145
           DA G +  ++  L    G    +++G    D         +  +  I    + +      
Sbjct: 60  DAGGRVLFVNSRLAGITGLSPDRLLGAGWLDAVHPEDRARVAADWRIEPAGEGRSAPRST 119

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
                  +G      +      +      F        V             +  + +  
Sbjct: 120 DFRFHDPDGEGAERRVL--CQRVALEEGGF-----IATVTDVSEYVHTANALRLSEARNE 172

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
            + +          E   + S          +   + +           D+L+     L 
Sbjct: 173 GILDTVAEAILTIDEAGILISFNRAAEAMFGVVADDVLWRPLGRLIPLADLLEAGGERLD 232

Query: 263 TSEESSLPEQEDFHTINLNQY---TKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
            +   ++            +              +  +    Y +     +    
Sbjct: 233 FAPGQTMALVTRDRAAEAERADGTRFPVELSVSASEVEGRRLYTAILRDVTERRR 287



 Score = 41.2 bits (95), Expect = 0.71,   Method: Composition-based stats.
 Identities = 31/246 (12%), Positives = 61/246 (24%), Gaps = 18/246 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G L   +       G  A  ++   L  +  +  +              T    T 
Sbjct: 185 IDEAGILISFNRAAEAMFGVVADDVLWRPLGRLIPLADLLEAGGERLDFAPGQTMALVTR 244

Query: 149 LWPIEGT---NLYVPIDLAALPIYSRNREFSGFRGF-GIVHVNRVDNDPRALGKRLDKKF 204
               E         P++L+         E  G R +  I+          A         
Sbjct: 245 DRAAEAERADGTRFPVELSVSAS-----EVEGRRLYTAILRDVTERRRAEAELLAAKAAA 299

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
                 K    +V   +       +P   +   +++  L    A  D  L +    +  +
Sbjct: 300 EAGDRAKSTFIAVMSHELR-----TPLNAVIGFSQLLELQAGDAAGDGQLLSCVDAIGQA 354

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
               L   +D     L+    +    +L     + F  +             +G  ++  
Sbjct: 355 GRRLLAIIDDI----LDMARVESGGLSLSEGVVDLFALVERCVADLRFQATRQGVTVSVA 410

Query: 325 TVDKCP 330
                P
Sbjct: 411 LDGDLP 416


>gi|225017309|ref|ZP_03706501.1| hypothetical protein CLOSTMETH_01235 [Clostridium methylpentosum
           DSM 5476]
 gi|224949926|gb|EEG31135.1| hypothetical protein CLOSTMETH_01235 [Clostridium methylpentosum
           DSM 5476]
          Length = 586

 Score =  340 bits (873), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 79/367 (21%), Positives = 165/367 (44%), Gaps = 25/367 (6%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP-VEDILRKPFTVFLEQN 504
           ++E + ++L S+L + ++G+  ++ +  ++ TN A  ++FG P  + ++ K     +   
Sbjct: 229 QLEEQNVKLSSMLNSMTEGVVAVDTKFRLILTNPAAHEMFGLPEPKGLIGKNIYGLMRNE 288

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDIS 562
              ++   L E+      ++ E          ++L L                  + D++
Sbjct: 289 EFYLL---LEEVAESGRSRSRELEWQVPGGS-RMLRLNAAPFFRQGGEPYGVLFVVEDVT 344

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           + ++ +                ++DF++ VSHE++TPLT+IIGF + +K           
Sbjct: 345 QIRRLE--------------QMRTDFVSNVSHELKTPLTSIIGFVDTLKAGAM--EDADT 388

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
              + + I      +  ++ D+L +S IES   +++  PV+L E   +   L++  A +K
Sbjct: 389 ARHFLDIISIESGRLYRLLQDILTLSSIESADQDVNVSPVALGEIARQVDQLLRPKAGDK 448

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           ++       +N+P    +   + Q+ +NI+ NA+ +T  G  I   T     + + + V 
Sbjct: 449 QLAFEIRVEDNLPPFACNRDRISQMLINIIENAVKYTEHGSVIT--TIEKRGDNLKICVS 506

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG+G+   +L++  + F ++   +     GTGLGL + K +V    G   + S   KG+
Sbjct: 507 DTGIGIPADQLDRVFERFYRVDKGRSRSMGGTGLGLSIVKHIVLLYQGSVSVSSEVGKGS 566

Query: 803 LIEIIFP 809
              I  P
Sbjct: 567 EFTIFLP 573


>gi|21244408|ref|NP_643990.1| sensor histidine kinase [Xanthomonas axonopodis pv. citri str. 306]
 gi|21110069|gb|AAM38526.1| sensor histidine kinase [Xanthomonas axonopodis pv. citri str. 306]
          Length = 631

 Score =  340 bits (873), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 90/481 (18%), Positives = 184/481 (38%), Gaps = 32/481 (6%)

Query: 341 LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400
           +   N +F   T             +  LL      +                I    + 
Sbjct: 13  IRTTNGAFERYTGLSPNAL---NVSIRNLLPE---HEQEWFDRYGHVARTGNRIHFEMQA 66

Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
             ++          +         PE      +  +  + +  +R++     +  ++ + 
Sbjct: 67  KALKR--------WYSVDAFRVGQPEQARVAILFMDITERKRVERELAESEARFSALADG 118

Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520
               + +++ +G++   N A  + FG  +       ++  L  +             SL 
Sbjct: 119 LPMPVWVLDAQGVVRFVNSAYGEFFGLDISSGTVSAWSELLHPDDLPTFQ--FELAASLQ 176

Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH----DISEWKQEK-------N 569
            ++ L  +      + +   + +       +    + +     D++E ++ +        
Sbjct: 177 EQRGLRALVRARRHDGQWRWIEMTATPRYSADGRFIGLAGSSPDVTEQREIELAREQLLE 236

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
               A+  AE  +  K +FLA +SHE+RTPLT I+G+SE++  +         Y +  + 
Sbjct: 237 SERSARNEAESMARLKDEFLATLSHELRTPLTTILGWSELLLQRVEEGQP---YYKGLSV 293

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I  S      +++D+LD+S +  GK+ L  E + L E V EA++  +L A  K  ++   
Sbjct: 294 IASSARAQKRLISDMLDLSSMLLGKVQLEVESLDLVEQVREALNTQELAAEGKDQVLELH 353

Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749
                  +L D   ++Q+  N+LSNAI FTP+ G+I +      +  +++ V D+G G+ 
Sbjct: 354 VPPTPCLVLGDATRLQQVLWNLLSNAIKFTPAHGRIDVKIE-RDDGHLVVSVCDSGDGIA 412

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIF 808
              L      F Q   +   +  G GLGL + + +V+ + G+    S    KG    +  
Sbjct: 413 AEFLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQLVEMHGGQVGATSGGRGKGATFTVRL 472

Query: 809 P 809
           P
Sbjct: 473 P 473



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 47/463 (10%), Positives = 117/463 (25%), Gaps = 48/463 (10%)

Query: 54  FTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM 113
           F D  +         +SE  F        +   W +DA G ++ ++    +  G      
Sbjct: 92  FMDITERKRVERELAESEARFSALADGLPMP-VWVLDAQGVVRFVNSAYGEFFGLDISSG 150

Query: 114 IGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172
                 ++     +      +   L+ Q            +G   +  I++ A P YS +
Sbjct: 151 TVSAWSELLHPDDLPTFQFELAASLQEQRGLRALVRARRHDG--QWRWIEMTATPRYSAD 208

Query: 173 REFSGFRGFG-IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231
             F G  G    V   R     R      ++   +  E        E         ++P 
Sbjct: 209 GRFIGLAGSSPDVTEQREIELAREQLLESERSARNEAESMARLKD-EFLATLSHELRTPL 267

Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291
             +   +++               +       +++  + +  D  ++ L +   +     
Sbjct: 268 TTILGWSELLLQRVEEGQPYYKGLSVIASSARAQKRLISDMLDLSSMLLGKVQLEVESLD 327

Query: 292 LQN---NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSF 348
           L      +  + E  +      L  +      L      +     +      + +  P+ 
Sbjct: 328 LVEQVREALNTQELAAEGKDQVLELHVPPTPCLVLGDATRLQQVLWNLLSNAIKF-TPAH 386

Query: 349 LLLTKYKSVDDI-------EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401
             +      DD        +   G++                    +     +  +    
Sbjct: 387 GRIDVKIERDDGHLVVSVCDSGDGIAAEFLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQ 446

Query: 402 TIQWNREN-----------SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR----K 446
            ++ +              +     +P    +Q      +             +     +
Sbjct: 447 LVEMHGGQVGATSGGRGKGATFTVRLPEHVPDQAKRPRRELRRRLMSEQIVEARALNGLR 506

Query: 447 MEIEVMQ------LCSILE----------ATSDGIAIINREGI 473
           +     Q      L  +LE          + +D +A+I+  G 
Sbjct: 507 LLAVEDQPDMLDYLRRLLEEQGAEVVTAGSATDALALIDHRGH 549



 Score = 57.3 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 19/173 (10%), Positives = 51/173 (29%), Gaps = 11/173 (6%)

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLT 352
             ++ +  ++       +     E E       D  P+P +V    G + + N ++    
Sbjct: 84  EQARVAILFMDITERKRVERELAESEARFSALADGLPMPVWVLDAQGVVRFVNSAYGEFF 143

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
                  ++I+ G  +        D+       L  S +      A L   + +      
Sbjct: 144 G------LDISSGTVSAWSELLHPDDLPTFQFELAASLQEQRGLRA-LVRARRHDGQWRW 196

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRI---NKRKMEIEVMQLCSILEATS 462
           +      + +     +   G  P+  + R     + ++        +  E+ +
Sbjct: 197 IEMTATPRYSADGRFIGLAGSSPDVTEQREIELAREQLLESERSARNEAESMA 249



 Score = 43.5 bits (101), Expect = 0.17,   Method: Composition-based stats.
 Identities = 14/110 (12%), Positives = 38/110 (34%), Gaps = 5/110 (4%)

Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530
           + +I +TN A  +  G     +        L ++     + Y     + +    +     
Sbjct: 10  DYVIRTTNGAFERYTGLSPNALNV-SIRNLLPEHEQEWFDRYGHVARTGNR---IHFEMQ 65

Query: 531 GSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
               + +  S+       P  +  ++   DI+E K+ + +L+ ++     
Sbjct: 66  AKALK-RWYSVDAFRVGQPEQARVAILFMDITERKRVERELAESEARFSA 114


>gi|298486447|ref|ZP_07004507.1| Sensory box histidine kinase/response regulator [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|298158924|gb|EFH99984.1| Sensory box histidine kinase/response regulator [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
          Length = 523

 Score =  340 bits (873), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 106/383 (27%), Positives = 186/383 (48%), Gaps = 18/383 (4%)

Query: 441 RINKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
              +R +     +L  I+E   D GI  ++R G + + N    ++ GY  ++I+ K F+V
Sbjct: 3   AERERALRDNEERLRLIIEGVKDYGIFALDRNGYVTTWNAGAERIKGYTEQEIIGKHFSV 62

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYS 555
           F               +    +     + +    K+       ++I            +S
Sbjct: 63  FYLPEECPQHPDM--ALREATVNGRYTEESWRRRKDGSRFWASVVITAQYDGNDELRGFS 120

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
               DIS+ +  +  L  A++ AE+ S  KS+FL+R+SHE+RTPL +I+GF++++     
Sbjct: 121 KITRDISDRRVAEIALGTAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLL----- 175

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
                        +I R+G  +L ++N++LDI++IE+G ++L  EPVSL   + EA+ LV
Sbjct: 176 DMDSPASQRPQIGHILRAGQHLLKLINEVLDIARIEAGHVSLSLEPVSLSSVLEEALVLV 235

Query: 676 QLYANEKRILIRT--SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
              A +  I ++      + +  ++AD + + Q+ LN+LSNAI +    GQ+ I    + 
Sbjct: 236 SPMAADANIELKALPQLPDKLG-VVADRQRLIQVLLNLLSNAIKYNRPEGQVRIEVEQSD 294

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
              V + V DTG G+    + +  KPF ++        EGTGLGL L+K+M++   G   
Sbjct: 295 E-RVTVSVIDTGYGIAPERIGQLFKPFERLDA--NPSVEGTGLGLALSKSMLEMMHGTLS 351

Query: 794 IFSTPAKGTLIEIIFPLYDTSHP 816
           + +TPA+G    +  PL     P
Sbjct: 352 VQNTPAEGCRFILELPLVLVHAP 374



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/259 (9%), Positives = 69/259 (26%), Gaps = 20/259 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH--IDPNNHIGDLLKRQNTW 143
            + +D +GY+   +    +  G    ++IG               P+  + +       +
Sbjct: 28  IFALDRNGYVTTWNAGAERIKGYTEQEIIGKHFSVFYLPEECPQHPDMALREATVNGR-Y 86

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGF---------RGFGIVHVNRVDNDPR 194
             ++     +G+  +  + + A   Y  N E  GF         R    + +     +  
Sbjct: 87  TEESWRRRKDGSRFWASVVITAQ--YDGNDELRGFSKITRDISDRRVAEIALGTAREEAE 144

Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254
              +   +  S +    +   +       +    SP         +    ++      + 
Sbjct: 145 RASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSPASQRPQIGHILRAGQHLLKL--IN 202

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
           +      + +   SL  +    +  L     +         +  + E  +    P     
Sbjct: 203 EVLDIARIEAGHVSLSLEPVSLSSVLE----EALVLVSPMAADANIELKALPQLPDKLGV 258

Query: 315 FDEGENLTPETVDKCPIPF 333
             + + L    ++      
Sbjct: 259 VADRQRLIQVLLNLLSNAI 277


>gi|241203816|ref|YP_002974912.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240857706|gb|ACS55373.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 769

 Score =  340 bits (873), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 133/678 (19%), Positives = 257/678 (37%), Gaps = 55/678 (8%)

Query: 171 RNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP 230
            + + +G +     ++ +   D  A    +            G S V     D F + S 
Sbjct: 105 DSGDITGAQARLAKYLPQDRLDSGAFVLLVQASGKVFAATTAGLSHVGSNVGDFFPEVSA 164

Query: 231 PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG 290
               R  ++   +           +            +    ++   +   +        
Sbjct: 165 --IRRFGDRAGVIETTIGGVPHYAEITLMGNAGGYIVAATSLDEIGRLWREELALNVTLF 222

Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFD---EGENLTPETVDKCPIPFFVYS-HGNLFYANP 346
              ++      Y  +          D   E        + +     + +      F+ + 
Sbjct: 223 AGISSILLVILYAYYTQVKRARDADDIFLESNLRVETALSRGRCGLWDFDFENREFFWSR 282

Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
           S   +      D     G  + L+      D+  +  +              ++  ++  
Sbjct: 283 SMYDMLGLPGSDKTMGFGEAARLMH----PDDGGLYEIARAIGKGASGQVD-QIFRMRHA 337

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
             + + M        +     M   GI  +  +     ++      +L   +E TS+   
Sbjct: 338 GGHYVWMRARAQVIRSNSGR-MHLIGIAMDVTEQHRLAQRYAEADQRLADAIECTSEAFV 396

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
           + ++   ++  N    + +G P   ++       +     +     +   +S        
Sbjct: 397 LWDKNDRLVMCNTHFQQAYGLPDSVLVPGTERSTV---NAAAARPVIERRISDADGSGYS 453

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH------------- 573
           + T     +E+ L +     +            DI+  K+ + +L               
Sbjct: 454 RTTEVQLADERWLQINERRTR---DGGRVSVGTDITLMKRHQERLRESERRLMATIGDLS 510

Query: 574 ----------------------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
                                  K+ AE  +  KS+FLA +SHE+RTPL AI+GFSE+++
Sbjct: 511 ASRQTLEIQKSELSTANSNYQAEKERAEAANKAKSEFLANMSHELRTPLNAILGFSEILQ 570

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
           NQ FGPLG+ +Y EYA  I  SG  +L+++ND+LD+SKIE+G + LH E + L   + E+
Sbjct: 571 NQMFGPLGSLKYDEYARDIHDSGKHLLNVINDILDMSKIEAGHVRLHCERIDLVPLIEES 630

Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
           +    + A EK I+I     + +  ++AD R++KQ+ LN+LSNA+ FT +GG+I + T  
Sbjct: 631 LRFTAMPAAEKNIVIEQRICSGL-TLMADRRAMKQVLLNLLSNAVKFTDNGGRIAVRTRR 689

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
                V++ + DTG+G+    L K  +PF Q+ +       G+GLGL +++++   + G+
Sbjct: 690 VD-GAVVVTIADTGIGIPRSALSKIGQPFEQVQSQYAKSKGGSGLGLAISRSLTSLHGGR 748

Query: 792 FYIFSTPAKGTLIEIIFP 809
             I S  A GT+I +  P
Sbjct: 749 MKIRSREAVGTVISLRIP 766



 Score = 45.4 bits (106), Expect = 0.042,   Method: Composition-based stats.
 Identities = 22/247 (8%), Positives = 54/247 (21%), Gaps = 7/247 (2%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN--HIGDLLKRQNTW 143
            W+ D        S  +   +G        M   + + ++H D      I   + +  + 
Sbjct: 268 LWDFDFENREFFWSRSMYDMLGLPGSDKT-MGFGEAARLMHPDDGGLYEIARAIGKGASG 326

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                         YV +   A  I S +         GI       +         D++
Sbjct: 327 QVDQIFRMRHAGGHYVWMRARAQVIRSNSGR---MHLIGIAMDVTEQHRLAQRYAEADQR 383

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL-RMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
            +   E       +  +   +    +       + + V       +  +           
Sbjct: 384 LADAIECTSEAFVLWDKNDRLVMCNTHFQQAYGLPDSVLVPGTERSTVNAAAARPVIERR 443

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
            S+               ++   +      ++  + S                +    L 
Sbjct: 444 ISDADGSGYSRTTEVQLADERWLQINERRTRDGGRVSVGTDITLMKRHQERLRESERRLM 503

Query: 323 PETVDKC 329
               D  
Sbjct: 504 ATIGDLS 510


>gi|168180587|ref|ZP_02615251.1| putative phosphate regulon sensor protein [Clostridium botulinum
           NCTC 2916]
 gi|226949882|ref|YP_002804973.1| sensor histidine kinase [Clostridium botulinum A2 str. Kyoto]
 gi|182668500|gb|EDT80479.1| putative phosphate regulon sensor protein [Clostridium botulinum
           NCTC 2916]
 gi|226842408|gb|ACO85074.1| sensor histidine kinase [Clostridium botulinum A2 str. Kyoto]
          Length = 569

 Score =  340 bits (873), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 94/392 (23%), Positives = 175/392 (44%), Gaps = 33/392 (8%)

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
            ++            + ++  +   ++  +  +L +IL++   G+  I++E  ++  N  
Sbjct: 208 EDEIGRLGRTFNAMADILENSLV--EVRDKQNRLEAILKSMDSGVVAIDKEFKVIMINPY 265

Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
            +KLFG    DI+ +     +           L ++L        E   L   K    + 
Sbjct: 266 ANKLFGIKR-DIIGENLMDNIRDFE-------LEKVLKDKEPGYKEIGILWPEKRTLRVK 317

Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
              II K   +      + DI++ K+ +              + +  F+A VSHE++TPL
Sbjct: 318 TTDIISKY-DNIGTVAVVQDITDIKKLE--------------NMREQFVANVSHELKTPL 362

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           T+I GFSE +K      + + +  E +   I+   + +  ++ND+L +S IE  K  L  
Sbjct: 363 TSIKGFSETLKY-----VDDKKNREKFLQIINDEADRLTRLINDILVLSNIEKQKQELIK 417

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719
           E + L+E + +   LV+  A +K I I       +P ++ +     Q+ +N++ NAI +T
Sbjct: 418 EKIDLNELIEKVYCLVKKSAEDKNIKINI-VGEKVPLLIGNKDKYNQMIINLVDNAIKYT 476

Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
              G + I T       ++  V DTGVG++   L++  + F ++  ++     GTGLGL 
Sbjct: 477 EPNGYVSIGTK-QDKGNIVFWVEDTGVGISEEHLDRIFERFYRVDKARSRAEGGTGLGLA 535

Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
           + K +V +  GK  + S P KGT   +  PL 
Sbjct: 536 IVKHIVLSINGKIEVKSEPKKGTKFIVKIPLS 567


>gi|84622292|ref|YP_449664.1| sensor histidine kinase [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|84366232|dbj|BAE67390.1| sensor histidine kinase [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 631

 Score =  340 bits (873), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 92/481 (19%), Positives = 189/481 (39%), Gaps = 32/481 (6%)

Query: 341 LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400
           +   N +F   T   +         +  LL      +        L       I    + 
Sbjct: 13  IRTTNGAFERYTGLSTNAL---NISIRDLLPE---HEQEWFDRYGLVARTGNRIHFEMQA 66

Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
             ++          +         P+      +  +  + +  +R++     +  ++ + 
Sbjct: 67  KALKR--------WYSVDAFRVGRPDQGRVAVLFMDITERKRVERELAESEARFSALADG 118

Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520
               + +++ +G++   N A  + FG  +       ++  L  +             SL 
Sbjct: 119 LPMPVWVLDAQGVVRFVNSAYGEFFGLDISSGTVSAWSELLHPDDLPTFQ--FELAASLQ 176

Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH----DISEWKQEK-------N 569
            ++ L  +      + +   + +       +    + +     D++E ++ +        
Sbjct: 177 EQRGLRALVRARRHDGQWRWIEMTATPRYSADGRFIGLAGSSPDVTEQREIELAREQLLE 236

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
               A+  AE  +  K +FLA +SHE+RTPLT I+G+SE++  +     G+  Y    + 
Sbjct: 237 SERSARNEAESMARLKDEFLATLSHELRTPLTTILGWSELLLQRV--EEGHTTYKG-LSV 293

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I  S      +++D+LD+S +  GK+ L  E + L E V EA++  +L A  K  +++  
Sbjct: 294 IASSARAQKRLISDMLDLSSMLLGKVQLEVESLDLAEQVREALNTQELAAEGKDQILKLH 353

Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749
                  +L D   ++Q+  N+LSNAI FTP+ G+I +S     +  +++ V D+G G+ 
Sbjct: 354 VPPTPCLVLGDATRLQQVVWNLLSNAIKFTPAHGRIDVSIE-RDDGHLVVSVCDSGDGIA 412

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIF 808
              L      F Q   +   +  G GLGL + + +V+ + G+    S    KG    +  
Sbjct: 413 AEFLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQLVEMHGGQVGATSGGRGKGATFTVRL 472

Query: 809 P 809
           P
Sbjct: 473 P 473



 Score = 74.7 bits (182), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 46/463 (9%), Positives = 116/463 (25%), Gaps = 48/463 (10%)

Query: 54  FTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM 113
           F D  +         +SE  F        +   W +DA G ++ ++    +  G      
Sbjct: 92  FMDITERKRVERELAESEARFSALADGLPMP-VWVLDAQGVVRFVNSAYGEFFGLDISSG 150

Query: 114 IGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172
                 ++     +      +   L+ Q            +G   +  I++ A P YS +
Sbjct: 151 TVSAWSELLHPDDLPTFQFELAASLQEQRGLRALVRARRHDG--QWRWIEMTATPRYSAD 208

Query: 173 REFSGFRGFG-IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231
             F G  G    V   R     R      ++   +  E        E         ++P 
Sbjct: 209 GRFIGLAGSSPDVTEQREIELAREQLLESERSARNEAESMARLKD-EFLATLSHELRTPL 267

Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLN---QYTKKQY 288
             +   +++        H      +       +++  + +  D  ++ L       +   
Sbjct: 268 TTILGWSELLLQRVEEGHTTYKGLSVIASSARAQKRLISDMLDLSSMLLGKVQLEVESLD 327

Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSF 348
                  +  + E  +      L  +      L      +     +      + +  P+ 
Sbjct: 328 LAEQVREALNTQELAAEGKDQILKLHVPPTPCLVLGDATRLQQVVWNLLSNAIKF-TPAH 386

Query: 349 LLLTKYKSVDDI-------EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401
             +      DD        +   G++                    +     +  +    
Sbjct: 387 GRIDVSIERDDGHLVVSVCDSGDGIAAEFLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQ 446

Query: 402 TIQWNREN-----------SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR----K 446
            ++ +              +     +P    +Q      +             +     +
Sbjct: 447 LVEMHGGQVGATSGGRGKGATFTVRLPEHIPDQAKRPRRELRRRLMSEQIVEARALNGLR 506

Query: 447 MEIEVMQ------LCSILE----------ATSDGIAIINREGI 473
           +     Q      L  +LE          + +D +A+++  G 
Sbjct: 507 LLAVEDQPDMLDYLRRLLEEQGAEVVTAGSATDALALLDHRGH 549



 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/173 (10%), Positives = 51/173 (29%), Gaps = 11/173 (6%)

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLT 352
           +  + +  ++       +     E E       D  P+P +V    G + + N ++    
Sbjct: 84  DQGRVAVLFMDITERKRVERELAESEARFSALADGLPMPVWVLDAQGVVRFVNSAYGEFF 143

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
                  ++I+ G  +        D+       L  S +      A L   + +      
Sbjct: 144 G------LDISSGTVSAWSELLHPDDLPTFQFELAASLQEQRGLRA-LVRARRHDGQWRW 196

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRI---NKRKMEIEVMQLCSILEATS 462
           +      + +     +   G  P+  + R     + ++        +  E+ +
Sbjct: 197 IEMTATPRYSADGRFIGLAGSSPDVTEQREIELAREQLLESERSARNEAESMA 249


>gi|182412630|ref|YP_001817696.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
 gi|177839844|gb|ACB74096.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
          Length = 929

 Score =  340 bits (873), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 124/642 (19%), Positives = 225/642 (35%), Gaps = 26/642 (4%)

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247
             +     +G   D +   ++   +  S   +E+    S       +R + +   L +  
Sbjct: 56  DANPAFMTIGHVADGRLLEVNPAFERESGYRREEVLGRSTLELNLWVRPEERDEFLRQMR 115

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLN--QYTKKQYFGTLQNNSKESFEYLSH 305
           A          +   + E  +L    D           T        +   +        
Sbjct: 116 ATGSVRDFEANFRAKSGEIRTLLLNADILAGEGPACMLTVGIDITERRRREQVQNATYRI 175

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIP----FFVYSHGNLFYANPSFLLLTKYKSVDDIE 361
                               +            + S      + P F+            
Sbjct: 176 SQAALADNDLAAFFAEIHLIIAGLMPARNLYVALLSLDRSLLSFPYFVDERSTAPAPRKP 235

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH-----TIQWNRENSLAMTFI 416
             G    +LD  K     A +  +L R      A  A         +         +   
Sbjct: 236 GNGLTEYVLDTAKPLLTTADELTVLLRERGRYQAMGAPAALWLGAPLLVEGRAIGVIAVQ 295

Query: 417 PFEKANQFPENMPQNGI-----EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471
            +     + E   +            V  R     +     Q   I E   +G+   +  
Sbjct: 296 DYSNPKAYGEEEQRLLTFVAEQAATVVHRRQIHAAIRQAEEQYRGIFENALEGLYQSSPS 355

Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN--TPSVMNHYLTEILSLDLRQTLEKIT 529
           G  L  N A++++ GY   + L         Q          +L      D     E   
Sbjct: 356 GRFLRANSALARMCGYESSEQLLHAINDIGHQIYVDEHRREQFLELAKVHDQVTDFESEI 415

Query: 530 LGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
                    +S  + + +        +     DI++ ++    L  AK+ A+  S  KS 
Sbjct: 416 FRRDGSRIWISESVRVVRNSAGELARFEGVAIDITQQREAARALQAAKEAADAASGAKSQ 475

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           FLA VSHE+RTPL  I+G++++++     PL   +  E    I  S   +L ++ND+LD+
Sbjct: 476 FLASVSHELRTPLNGILGYTQILRRD---PLLGEKQREGIRVIHESAEHLLVLINDVLDL 532

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQ 706
           SKIE+G++ LH    +L E  + A  +    A EK +L+ T+ A ++P  +  D   ++Q
Sbjct: 533 SKIEAGRIELHPGDFALAEFAAGAERVFAPRAREKNLLLETALAPDLPEFVRGDEARLRQ 592

Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
           +  N+L NA+ FT  GG ++ S + ++   +   V DTG G+   +L +  +PF Q+  S
Sbjct: 593 VVFNLLGNAVKFTAQGG-VVFSISSSAGGGLRFSVSDTGRGIAAADLSRIFEPFTQVGES 651

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
                 GTGLGL +++++V+   G+  + S P  G+      
Sbjct: 652 TGAAT-GTGLGLAISRSLVERMGGRLQVESKPGWGSRFWFDL 692



 Score = 89.3 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 46/447 (10%), Positives = 114/447 (25%), Gaps = 49/447 (10%)

Query: 45  CHDSFEQSNFTDQNQES--VSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEEL 102
                  S    + QE+  VS  +  +SE+ F           T    A G L E++   
Sbjct: 20  SASPNAASTELARVQEALRVSEASRRESESLFAKTFDANPAFMTIGHVADGRLLEVNPAF 79

Query: 103 PKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPID 162
            +  G    +++G    +++  +  +  +     ++   +       +  + +     + 
Sbjct: 80  ERESGYRREEVLGRSTLELNLWVRPEERDEFLRQMRATGSVRDFEANFRAK-SGEIRTLL 138

Query: 163 LAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK---------FSHLHEIKKG 213
           L A  +           G  I    R +    A  +              F+ +H I  G
Sbjct: 139 LNADILAGEGPACMLTVGIDITERRRREQVQNATYRISQAALADNDLAAFFAEIHLIIAG 198

Query: 214 HSSVEK------------------EKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255
                                         +     P   +   V    +      D L 
Sbjct: 199 LMPARNLYVALLSLDRSLLSFPYFVDERSTAPAPRKPGNGLTEYVLDTAKPLLTTADELT 258

Query: 256 TEKYPL--------LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
                           +     P   +   I +                +    +++ + 
Sbjct: 259 VLLRERGRYQAMGAPAALWLGAPLLVEGRAIGVIAVQDYSNPKAYGEEEQRLLTFVAEQA 318

Query: 308 -----HPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIE 361
                   + A   + E       +      +  S  G    AN +   +  Y+S + + 
Sbjct: 319 ATVVHRRQIHAAIRQAEEQYRGIFENALEGLYQSSPSGRFLRANSALARMCGYESSEQLL 378

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
            A  ++ +     + ++   + + L +         + +        + + ++       
Sbjct: 379 HA--INDIGHQIYVDEHRREQFLELAKVHDQVTDFESEIFR---RDGSRIWISESVRVVR 433

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKME 448
           N   E     G+  +    R   R ++
Sbjct: 434 NSAGELARFEGVAIDITQQREAARALQ 460


>gi|114049035|ref|YP_739585.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-7]
 gi|113890477|gb|ABI44528.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-7]
          Length = 1681

 Score =  340 bits (873), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 114/585 (19%), Positives = 213/585 (36%), Gaps = 28/585 (4%)

Query: 235  RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294
                  S L + +A        E      + +  L  ++        +            
Sbjct: 622  DWPELQSILNKAFAQIPQDKAREIQHRWVNVQYDLGLKKQQVFNWAVRIAVAVLLVLFLF 681

Query: 295  NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTK 353
            + +                      +      D          S G +   N + L L K
Sbjct: 682  SLRNRRLNKDIAQRIHTEQQLSLSMHKFQALFDSAVDACVITDSQGVIIECNSALLSLLK 741

Query: 354  YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS----DRTCIAASARLHTIQWNREN 409
            Y+S D +    G  TL+  P+ SD+   + V   R     D+  +   +   T       
Sbjct: 742  YQSKDQL---IGQRTLVYYPEQSDDALNQSVFERRLQTVLDQGQLKFESEFITT-----A 793

Query: 410  SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469
            +  +      K  +   ++   G   +  + ++    +E E   L ++L  +  G+ I  
Sbjct: 794  AEIIHVDVTLKRIELNGSLFVLGSYHDLSERKLMNALLERERDLLKNVLGRSPIGVWIC- 852

Query: 470  REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
             EG+    N  ++++ G      + +          P     ++ E+         E   
Sbjct: 853  VEGVCRYVNEQITEMTGLE----VGQSVYRIFV--QPEDYRCHIRELDLSQDSTVFETQL 906

Query: 530  LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
              +  + + + L          +       DI++ K  +++L+ AK  AE  +  KSDFL
Sbjct: 907  FDAHGQRRDVLLTSYHTVQDGQNANLCWALDITDTKSIQDELAIAKDAAEAANRAKSDFL 966

Query: 590  ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
            A +SHEIRTP+ AI+G S ++           +  +Y   + ++   +L I+ND+LD SK
Sbjct: 967  ANMSHEIRTPMNAILGMSYLVLQTELSS----KQRDYVGKVHQAAGSLLGILNDILDFSK 1022

Query: 650  IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIA 708
            IE+ KM++      LD+ +S   ++V     EK +         +PR    D   + QI 
Sbjct: 1023 IEAEKMDIECTVFDLDDVLSNLANVVSYKVEEKNMAFIFDLPPELPRYYHGDGLRLGQIL 1082

Query: 709  LNILSNAIHFTPSGGQIIISTTHTSNEE---VILRVRDTGVGMTNYELEKAMKPFGQIPN 765
            +N  +NA+ F+ +   +++S       E   +   V D G+G+   +       F Q+  
Sbjct: 1083 INYCNNAVKFSHNDSSVVLSCQTQQQGEQVELTFCVEDFGIGIPEQKQGVLFGSFEQVDA 1142

Query: 766  SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            S      GTGLGL + K +     G+ +  S    G+   +   L
Sbjct: 1143 STSREYGGTGLGLAICKRLAHLMGGEVWCESELGVGSRFYLRLTL 1187



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/306 (11%), Positives = 92/306 (30%), Gaps = 22/306 (7%)

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLF--YAN-PSFLLL 351
            S +           + +   D+  ++    V              +   + N PS   L
Sbjct: 535 ESLKGKSVSVVAGDITQNHLLDDYPDIVLVPVSNLEQALTAVDKRQVDAAFVNFPSTAHL 594

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS-ARLHTIQWNRENS 410
            +    + ++I                +  +   +       I    AR    +W     
Sbjct: 595 LQSPPFNRLQITAATDYRFGISMGVRKDWPELQSILNKAFAQIPQDKAREIQHRWVNVQY 654

Query: 411 -----------LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459
                       A+          F  ++    +  +       ++++ + + +  ++ +
Sbjct: 655 DLGLKKQQVFNWAVRIAVAVLLVLFLFSLRNRRLNKDIAQRIHTEQQLSLSMHKFQALFD 714

Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRKPFTVFLEQNTPSV-----MNHYL 513
           +  D   I + +G+I+  N A+  L  Y   + ++ +   V+  + +            L
Sbjct: 715 SAVDACVITDSQGVIIECNSALLSLLKYQSKDQLIGQRTLVYYPEQSDDALNQSVFERRL 774

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH 573
             +L     +  E   + +  E   + + +   +L  S     + HD+SE K     L  
Sbjct: 775 QTVLDQGQLK-FESEFITTAAEIIHVDVTLKRIELNGSLFVLGSYHDLSERKLMNALLER 833

Query: 574 AKKIAE 579
            + + +
Sbjct: 834 ERDLLK 839



 Score = 41.9 bits (97), Expect = 0.46,   Method: Composition-based stats.
 Identities = 25/274 (9%), Positives = 69/274 (25%), Gaps = 26/274 (9%)

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL---RMKNKVS 241
                             KF  L +       +   +  I    S    L   + K+++ 
Sbjct: 690 KDIAQRIHTEQQLSLSMHKFQALFDSAVDACVITDSQGVIIECNSALLSLLKYQSKDQLI 749

Query: 242 SLTEYYAHKDDVLKTEKYPLLTSE------ESSLPEQEDFHTINLNQYTKKQYFGTLQ-- 293
                  + +         +          +  L  + +F T              ++  
Sbjct: 750 GQRTLVYYPEQSDDALNQSVFERRLQTVLDQGQLKFESEFITTAAEIIHVDVTLKRIELN 809

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTK 353
            +      Y        ++A  +   +L    + + PI  ++   G   Y N     +T 
Sbjct: 810 GSLFVLGSYHDLSERKLMNALLERERDLLKNVLGRSPIGVWICVEGVCRYVNEQITEMTG 869

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
                 +E+   +  +   P+    +      +   D +  +          + +    +
Sbjct: 870 ------LEVGQSVYRIFVQPEDYRCH------IRELDLSQDSTVFETQLFDAHGQRRDVL 917

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
                   +    N+       +  DT+  + ++
Sbjct: 918 LTSYHTVQDGQNANLCWAL---DITDTKSIQDEL 948


>gi|197118519|ref|YP_002138946.1| sensor histidine kinase [Geobacter bemidjiensis Bem]
 gi|197087879|gb|ACH39150.1| sensor histidine kinase, Cache, PAS, PAS, PAS and PAS
            domain-containing protein [Geobacter bemidjiensis Bem]
          Length = 1260

 Score =  340 bits (873), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 107/776 (13%), Positives = 230/776 (29%), Gaps = 75/776 (9%)

Query: 79   IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLL 137
                +   +  DA G+    ++      G    +++G  + DV      D       +L 
Sbjct: 375  DIIPIPVYYK-DAQGHYLGCNQAFLDFNGLGREELMGKTVHDVVPPDLADKYYRSDKELF 433

Query: 138  KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG 197
                    +     + G      I        + +    G  G  +              
Sbjct: 434  GVGGVQVFEAKA--VNGQLAQRDITFFKTTFPASDGSHGGILGAML--DITEHKQAEEAL 489

Query: 198  KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR--------------------MK 237
            +   +    L       + V   ++ +    S    L                      +
Sbjct: 490  QTQKEFAESLVMKSTVPTFVLDHRHRVIIWNSALEALTGIKADDVLGLENLWKIFYETER 549

Query: 238  NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297
              ++ L    A          Y         +  +  +   +   +        +++ + 
Sbjct: 550  PLLADLILDEALDGLSEHYGHYRHSPLISGGIQAEGWYRDPSGAGHYITISAAPIRDRNG 609

Query: 298  ESFEYLSHRNHPSLSAYFDEG----ENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLT 352
                 L      +      +            +D        V + G + + NP+   + 
Sbjct: 610  VLVGALQVMEDITERKLAQDAHEKTRRQLQLILDAAGEGINGVDTQGRITFVNPAAADMV 669

Query: 353  KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
             +   + +               S     +  +            +     + +  +   
Sbjct: 670  GWTQEELLGQNQHALMHHSREDGSPFPVQECAVAAACH-EGRPYKSEELFWRKDGTSFYV 728

Query: 413  MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG 472
                   + +   E +    I  +  + R+ + ++     +L   +  +   I I +  G
Sbjct: 729  ECNCSPLRED--GELVGAVIIYKDMTERRLAEEQLL----KLSQAVMQSPVSIIITDTLG 782

Query: 473  IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
             I   N   + + GY  ++++ +   +     T   +   L   ++    +         
Sbjct: 783  NIEFVNPRFTHVTGYEADEVIGRNPRLLQSGKTSPELYQGLWNTITSG--RVWTGELNNR 840

Query: 533  TKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
             K          I  +  S+     +   M  ISE K+ + +L  A+K+           
Sbjct: 841  YKSGATHWEHATISPIRNSAGAISHFMAFMESISERKKLEEQLRQAQKM-----EAIGQL 895

Query: 589  LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
               V+H+    LT I+GF ++++     P G+P  +E    I  + +    +   LL  S
Sbjct: 896  AGGVAHDFNNILTVIMGFGQLLQ--HSLPAGDP-MLESMEQILDAADRATHLTRSLLAFS 952

Query: 649  KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIA 708
            +    K  +    V L +   +    + +    + + ++T F      ++AD   ++Q+ 
Sbjct: 953  R----KQVMLLHQVELSDLARKHAKFL-VRIIGEDVTLKTYFCEEKLMVMADSGQIEQVL 1007

Query: 709  LNILSNAIHFTPSGGQIIISTTHT--------------SNEEVILRVRDTGVGMTNYELE 754
            +N+ +NA    P GG++ I T                      ++ V DTG GM     +
Sbjct: 1008 MNLATNARDAMPGGGELTIKTEAVQLDEEFHRMHGYGMPGRYALITVTDTGTGMDPETQQ 1067

Query: 755  KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            K  +PF          G GTGLGL +   ++  + G   IFS    GT   I  PL
Sbjct: 1068 KIFEPFFTTKLP----GRGTGLGLSIVYGIIKQHGGYVTIFSQRGFGTTFSIYLPL 1119



 Score = 75.8 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 24/181 (13%), Positives = 56/181 (30%), Gaps = 2/181 (1%)

Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
            T Q            P          + ++  +    +    K +++ ++     +++ 
Sbjct: 317 FTEQIRGMTQHKEAAQPVGVNTGDEIEVLRDAFDQLLAELEAQKSELKRQLDFSRILIDI 376

Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520
               +   + +G  L  N+A     G   E+++ K     +  +          E+  + 
Sbjct: 377 IPIPVYYKDAQGHYLGCNQAFLDFNGLGREELMGKTVHDVVPPDLADKYYRSDKELFGVG 436

Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIA 578
             Q  E   +     ++ ++                   M DI+E KQ +  L   K+ A
Sbjct: 437 GVQVFEAKAVNGQLAQRDITFFKTTFPASDGSHGGILGAMLDITEHKQAEEALQTQKEFA 496

Query: 579 E 579
           E
Sbjct: 497 E 497


>gi|329848921|ref|ZP_08263949.1| sensory box protein [Asticcacaulis biprosthecum C19]
 gi|328843984|gb|EGF93553.1| sensory box protein [Asticcacaulis biprosthecum C19]
          Length = 639

 Score =  340 bits (873), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 105/496 (21%), Positives = 199/496 (40%), Gaps = 32/496 (6%)

Query: 322 TPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
               V+            G +   N S   L  Y   + I         L  PK   +  
Sbjct: 15  LAAIVESSDDAIIGKTLDGIVTAWNASATRLFGYTPEEAIGQHIS----LIIPKDRLDEE 70

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
              +   +  +                  ++ ++       +     +  + I  +    
Sbjct: 71  FVIIGKVKEGQRLEHFETVRQ---GQNGRTIDISLTVSPIKDAKGRIVGVSKIARDISIA 127

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +  +R        L +I++A+ D I     +G+I S N +  ++FGY  ++ + +   + 
Sbjct: 128 KRAERLAAS----LNAIVDASDDAIVSKTLDGVITSWNPSAVRIFGYTPDEAIGQHIGLI 183

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL---- 556
           +  +        L +I     ++     TL   K+   + L + +  L       +    
Sbjct: 184 IPPDRIDEEYTILGKI--GAGQKVDHFETLRRHKDGSFVELAVTVSPLLDGRGRVMGATK 241

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
               I+E KQ +  L        + +  K +FLA +SHE+RTP+ A+IG + ++      
Sbjct: 242 VARPIAEAKQTERAL-------RESNRRKDEFLANMSHELRTPMNAVIGLAHIL---GMS 291

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
              NP+  +    + +SG+ +L ++N+LLD S++ES  + L     +  + V  ++ ++Q
Sbjct: 292 ENLNPKEQQCVAMLKQSGDNLLGLINNLLDFSRLESDALELEVLEFNPADVVENSMIMIQ 351

Query: 677 LYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQ---IIISTTHT 732
           L A EK + IR ++  NI  R L D   ++QI  N+L+NA+ FT  G     + I     
Sbjct: 352 LKAQEKDLPIRVTYDRNIKDRYLGDPARLQQILTNLLANAVKFTDEGQIDVAVRIKAERL 411

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
           ++  +   V DTG+G+   + E     F Q   S   +  G+GLGL + +A+  A  G  
Sbjct: 412 NDTVLAFDVTDTGIGIAADKAEMIFDTFTQADASMTRKYGGSGLGLSICRALARAMNGSI 471

Query: 793 YIFSTPAKGTLIEIIF 808
            + S P  G+   +  
Sbjct: 472 SVVSRPGIGSTFTVEL 487



 Score = 62.7 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 11/127 (8%), Positives = 32/127 (25%), Gaps = 5/127 (3%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG-KTTLW 150
            G +   +    +  G    + IG  +  +     ID    I   +         +T   
Sbjct: 154 DGVITSWNPSAVRIFGYTPDEAIGQHIGLIIPPDRIDEEYTILGKIGAGQKVDHFETLRR 213

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
             +G+ + + + ++  P+        G     +              +  +++       
Sbjct: 214 HKDGSFVELAVTVS--PLLDGRGRVMGATK--VARPIAEAKQTERALRESNRRKDEFLAN 269

Query: 211 KKGHSSV 217
                  
Sbjct: 270 MSHELRT 276



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/236 (8%), Positives = 57/236 (24%), Gaps = 13/236 (5%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGKTTLW 150
            G +   +    +  G    + IG  +  +     +D     IG + + Q   + +T   
Sbjct: 32  DGIVTAWNASATRLFGYTPEEAIGQHISLIIPKDRLDEEFVIIGKVKEGQRLEHFETVRQ 91

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
              G  + + + ++  PI        G     I     +         RL    + + + 
Sbjct: 92  GQNGRTIDISLTVS--PIKDAKGRIVGVSK--IARDISIAKRAE----RLAASLNAIVDA 143

Query: 211 KKGHSSVEKEKYDIFSQQSPPPHL--RMKNKVSSLTEYYAHKDDVLKTE--KYPLLTSEE 266
                  +     I S       +     ++            D +  E      + + +
Sbjct: 144 SDDAIVSKTLDGVITSWNPSAVRIFGYTPDEAIGQHIGLIIPPDRIDEEYTILGKIGAGQ 203

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
                +      + +          L +               + +   +     +
Sbjct: 204 KVDHFETLRRHKDGSFVELAVTVSPLLDGRGRVMGATKVARPIAEAKQTERALRES 259


>gi|170757594|ref|YP_001782071.1| putative phosphate regulon sensor protein [Clostridium botulinum B1
           str. Okra]
 gi|169122806|gb|ACA46642.1| sensor histidine kinase [Clostridium botulinum B1 str. Okra]
          Length = 569

 Score =  340 bits (873), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 95/392 (24%), Positives = 175/392 (44%), Gaps = 33/392 (8%)

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
            ++            + ++  +   ++  +  +L +IL++   G+  I++E  ++  N  
Sbjct: 208 EDEIGRLGRTFNAMADILENSLV--EVRDKQNRLEAILKSMDSGVVAIDKEFKVIMINPY 265

Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
            +KLFG    DI+ +     +           L ++L        E   L   K    + 
Sbjct: 266 ANKLFGIKR-DIIGENLMDNIRDFE-------LEKVLKDKEPGYKEIGILWPEKRTLRVK 317

Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
              II K   +      + DI++ K+ +              + +  F+A VSHE++TPL
Sbjct: 318 TTDIISKY-DNIGTVAVVQDITDIKKLE--------------NMREQFVANVSHELKTPL 362

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           T+I GFSE +K      + + +  E +   I+   + +  ++ND+L +S IE  K  L  
Sbjct: 363 TSIKGFSETLKY-----VDDKKNREKFLQIINDEADRLTRLINDILVLSNIEKQKQELIK 417

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719
           E + L+E + +   LV+  A +K I I       IP ++ +     Q+ +N++ NAI +T
Sbjct: 418 EKIDLNELIEKVYCLVKKSAEDKNIKINI-VGEKIPLLIGNKDKYNQMIINLVDNAIKYT 476

Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
              G + I T       ++  V DTGVG++   L++  + F ++  ++     GTGLGL 
Sbjct: 477 EPNGYVSIGTK-QDKGNIVFWVEDTGVGISEEHLDRIFERFYRVDKARSRAEGGTGLGLA 535

Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
           + K +V +  GK  + S P KGT   +  PL 
Sbjct: 536 IVKHIVLSINGKIEVKSEPKKGTKFIVKIPLS 567


>gi|294508545|ref|YP_003572604.1| two-component sensor histidine kinase [Salinibacter ruber M8]
 gi|294344874|emb|CBH25652.1| two-component sensor histidine kinase [Salinibacter ruber M8]
          Length = 959

 Score =  340 bits (873), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 135/753 (17%), Positives = 256/753 (33%), Gaps = 43/753 (5%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ-NTWYG 145
           + +D  G  +  ++ + +T G    + +G  +  +   +  +        ++R   T  G
Sbjct: 225 FALDPTGQFQWWNDRVLETTGLS-DEDVG-SVDALDHFVPAEREKQAKQAIRRVLQTGSG 282

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +  +  +    + VP +    P+ +   E    +   +              +  +++F 
Sbjct: 283 QVEVPLVADDGVAVPYEFVGNPVENLEGE---RQIVCVGRNVAERKRRERELRESERRFQ 339

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL-----TEYYAHKDDVLKTEKYP 260
            +       + V                     +   L        +   ++     K  
Sbjct: 340 AMLNDPNILAGVLSPDGTFQKVNDTALGYIEATRADVLGRPFWETPWWETENRSAVRKKV 399

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG-- 318
              +E   +  + +  T +    T       +     E           +     +E   
Sbjct: 400 ERVAEGEYMRFEAEHVTPDGEARTVTGIMRPVTGEEGEVVSIFVTARDITERKRREEALQ 459

Query: 319 --ENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
             E      ++  P   F++        A    L        D     GG   +  A   
Sbjct: 460 VAEGRYRALIENFPGGVFLFDEDLQYTLAGGRELRDAGLSPSDV--EGGGPHDIFPAAL- 516

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
                +        +    A    +     +               ++    +    +  
Sbjct: 517 --AEELDMYFRRALNGEKNAFEQTM-----DGRRYF---NRTLPVRDEAGTVIAGMAVAQ 566

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED-ILR 494
           +  + R  K K+E +        E  + G    + +   L+      ++ G      +  
Sbjct: 567 DITEERRRKEKLERKNDLFQRAQEIANVGGWEYDLDTGALTLTDQAYRIHGVSPGAKMTL 626

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-C 553
           +        N                +   +E   +    EEK +  R   ++    +  
Sbjct: 627 ERSHGLYHPNDRWEAEEAFRRAAEDGVPYDVEARLITDAGEEKWIRTRGAPQQDDGRTVR 686

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKE-------SSHKSDFLARVSHEIRTPLTAIIGF 606
              T+ DI++ K+ +  L  AK  AE         S  KS FLA +SHEIRTPLT+IIGF
Sbjct: 687 VRGTIQDITDQKEREQALRTAKADAEAARQEAEEASRLKSAFLANISHEIRTPLTSIIGF 746

Query: 607 SEVIKNQRFG-PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
           +E+I ++     L +     YA  I+RSG  +L+ +  +L++SK++SG+M L   PV L+
Sbjct: 747 AELIGSEAGALDLSDSPLPGYATMIERSGKRLLETLEGVLNLSKLQSGQMKLETAPVDLN 806

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725
           E +  A+  ++  A EK +  R            D   ++ +  N++SNAI +T  GG I
Sbjct: 807 EQIRWAVQELRPKAEEKGV--RLQLETGCAVAEGDEGGIQIVIRNLVSNAIKYTEQGGHI 864

Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
            +  +  + +  +L V DTG+GM     E   +PF Q         EGTG+GL +    V
Sbjct: 865 WVR-SFQNEDRAVLEVEDTGIGMDPAVAESLFEPFRQASEGLNREYEGTGVGLAVTNKAV 923

Query: 786 DANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
               G   + +   +GT   I  P  +  HP D
Sbjct: 924 AQMDGSIEVDTEKDEGTRFTIQLPASE-EHPTD 955



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/166 (12%), Positives = 40/166 (24%), Gaps = 19/166 (11%)

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINK-----RKMEIEVMQLC-------SILE 459
           A+   P              G+    V           R++E +  +L         +L 
Sbjct: 159 AVQLSPLVLCGGMAMVAFVVGVVARWVLRVRRHLADQARELEEQRDRLEGHRAYTNRLLN 218

Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP-FTVFLEQNTPSVMNHYLTEILS 518
           AT D    ++  G     N  V +  G   ED+        F+           +  +L 
Sbjct: 219 ATDDLFFALDPTGQFQWWNDRVLETTGLSDEDVGSVDALDHFVPAEREKQAKQAIRRVLQ 278

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKK---LPFSSCYSLTMHDI 561
               Q           +   +    +      L           ++
Sbjct: 279 TGSGQV---EVPLVADDGVAVPYEFVGNPVENLEGERQIVCVGRNV 321


>gi|194017044|ref|ZP_03055657.1| sensor protein ResE [Bacillus pumilus ATCC 7061]
 gi|194011650|gb|EDW21219.1| sensor protein ResE [Bacillus pumilus ATCC 7061]
          Length = 593

 Score =  340 bits (873), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 86/364 (23%), Positives = 151/364 (41%), Gaps = 24/364 (6%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            +  E   L +IL + +DG+  IN +G IL TN    +           +   +      
Sbjct: 247 ALNQEKEHLSNILSSMADGVITINIDGTILMTNPPAERFL---QAWYYEQNMKIKDGDEL 303

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
           P          +S +  Q +E    G T     + L   +            + D++E +
Sbjct: 304 PPEARELFHTAVSTEKEQMIEVTLQGRT----WVLLMSPLYNQQDVRGAVAVLRDMTEER 359

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           +                  + DF+A VSHE+RTP+  + G+SE I +   G        E
Sbjct: 360 RL--------------DKLRKDFIANVSHELRTPIAMLQGYSEAIVDDIAG--SEEEKKE 403

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
            A  I      +  +VNDLLD++++E+G + L+ E    +E   +        A EK++ 
Sbjct: 404 IAQIIYDESLRMGRLVNDLLDLARMEAGHITLNLESTDTEELTEKIYRKFLGIAKEKQVD 463

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +      + P  + D   ++Q+  N++ NAI  TP GG++  S     +  + + V+D+G
Sbjct: 464 LTYDIQVDEPYFVLDPDKIEQVFTNLIDNAIRHTPEGGEVHFSVQSVESG-LKMDVKDSG 522

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
            G+   +L    + F +   ++     GTGLGL + K +V+A+ G  +  S    GT   
Sbjct: 523 SGIPEEDLPFIFERFYKADKARTRGRSGTGLGLAIVKNIVEAHQGSIHAHSKAGTGTHFT 582

Query: 806 IIFP 809
              P
Sbjct: 583 FYIP 586


>gi|217037907|gb|ACJ76425.1| hybrid sensor kinase RscS [Aliivibrio fischeri]
          Length = 927

 Score =  340 bits (873), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 96/379 (25%), Positives = 178/379 (46%), Gaps = 15/379 (3%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +    + E E  +L  + E   D I I++++G +   N++ S L G  +EDI  K     
Sbjct: 256 KRELIRSEKEKAKLALVAEYAHDAIFILDKQGRLTWINQSYSALSGNTLEDIEGKDLPSI 315

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSL 556
           L+        + +  + SL+   ++        K+  L  + + I  +   +     Y  
Sbjct: 316 LQ-LDKIKHANIIILLQSLETGTSISFELTNHHKDGTLFWIDVSITPILEPNGNIMHYIA 374

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
              DI++ K+ ++KL  A   A+  +  KS FLA +SHE+RTPL  I+G +++I++    
Sbjct: 375 VERDITKKKELEDKLIKAANKADVSNRAKSTFLATMSHELRTPLNGILGMAQIIESN--- 431

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
            + +    +    +  SG+ +L ++N++LD SKIE  K+ L+       + +    +   
Sbjct: 432 -IKDKEQHKQIKMLLESGDHLLFLLNEILDFSKIEQNKLELNHASFYFVDIIEPITNTYL 490

Query: 677 LYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
                K +        N   + + D   ++QI  N++SNA+ FT  G  I ++ +HT   
Sbjct: 491 SVCENKGLKFIIDNKINNEIVFIGDKPRIRQIIFNLISNAVKFTHEGS-ITLNFSHTLTG 549

Query: 736 E----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
           +    V ++++DTGVG+    L+   +P+ Q   S   +  GTGLGL + K + D   G 
Sbjct: 550 KGKQAVQIKIKDTGVGIRENRLKHIFEPYIQAEASTTRQYGGTGLGLAIVKQLTDIMRGY 609

Query: 792 FYIFSTPAKGTLIEIIFPL 810
             + S+  KG+   ++ PL
Sbjct: 610 ISVSSSEGKGSCFTLVLPL 628



 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 42/142 (29%), Gaps = 6/142 (4%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI--GDLLKRQNTW 143
            + +D  G L  I++      GN    + G  L  +  +  I   N I     L+   + 
Sbjct: 280 IFILDKQGRLTWINQSYSALSGNTLEDIEGKDLPSILQLDKIKHANIIILLQSLETGTSI 339

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             + T    +GT     ID++  PI   N     +    +        +      +   K
Sbjct: 340 SFELTNHHKDGTLF--WIDVSITPILEPNGNIMHY--IAVERDITKKKELEDKLIKAANK 395

Query: 204 FSHLHEIKKGHSSVEKEKYDIF 225
               +  K    +    +    
Sbjct: 396 ADVSNRAKSTFLATMSHELRTP 417


>gi|59713420|ref|YP_206195.1| hybrid sensor kinase RscS [Vibrio fischeri ES114]
 gi|12620414|gb|AAG60694.1|AF319618_1 RscS [Aliivibrio fischeri]
 gi|59481668|gb|AAW87307.1| hybrid sensor kinase RscS [Vibrio fischeri ES114]
          Length = 927

 Score =  340 bits (873), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 96/379 (25%), Positives = 178/379 (46%), Gaps = 15/379 (3%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +    + E E  +L  + E   D I I++++G +   N++ S L G  +EDI  K     
Sbjct: 256 KRELIRSEKEKAKLALVAEYAHDAIFILDKQGRLTWINQSYSALSGNTLEDIEGKDLPSI 315

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSL 556
           L+        + +  + SL+   ++        K+  L  + + I  +   +     Y  
Sbjct: 316 LQ-LDKIKHANIIILLQSLETGTSISFELTNHHKDGTLFWIDVSITPILEPNGNIMHYIA 374

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
              DI++ K+ ++KL  A   A+  +  KS FLA +SHE+RTPL  I+G +++I++    
Sbjct: 375 VERDITKKKELEDKLIKAANKADVSNRAKSTFLATMSHELRTPLNGILGMAQIIESN--- 431

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
            + +    +    +  SG+ +L ++N++LD SKIE  K+ L+       + +    +   
Sbjct: 432 -IKDKEQHKQIKMLLESGDHLLFLLNEILDFSKIEQNKLELNHASFYFVDIIEPITNTYL 490

Query: 677 LYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
                K +        N   + + D   ++QI  N++SNA+ FT  G  I ++ +HT   
Sbjct: 491 SVCENKGLKFIIDNKINNEIVFIGDKPRIRQIIFNLISNAVKFTHEGS-ITLNFSHTLTG 549

Query: 736 E----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
           +    V ++++DTGVG+    L+   +P+ Q   S   +  GTGLGL + K + D   G 
Sbjct: 550 KGKQAVQIKIKDTGVGIRENRLKHIFEPYIQAEASTTRQYGGTGLGLAIVKQLTDIMRGY 609

Query: 792 FYIFSTPAKGTLIEIIFPL 810
             + S+  KG+   ++ PL
Sbjct: 610 ISVSSSEGKGSCFTLVLPL 628



 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 42/142 (29%), Gaps = 6/142 (4%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI--GDLLKRQNTW 143
            + +D  G L  I++      GN    + G  L  +  +  I   N I     L+   + 
Sbjct: 280 IFILDKQGRLTWINQSYSALSGNTLEDIEGKDLPSILQLDKIKHANIIILLQSLETGTSI 339

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             + T    +GT     ID++  PI   N     +    +        +      +   K
Sbjct: 340 SFELTNHHKDGTLF--WIDVSITPILEPNGNIMHY--IAVERDITKKKELEDKLIKAANK 395

Query: 204 FSHLHEIKKGHSSVEKEKYDIF 225
               +  K    +    +    
Sbjct: 396 ADVSNRAKSTFLATMSHELRTP 417


>gi|217967138|ref|YP_002352644.1| GAF sensor signal transduction histidine kinase [Dictyoglomus
           turgidum DSM 6724]
 gi|217336237|gb|ACK42030.1| GAF sensor signal transduction histidine kinase [Dictyoglomus
           turgidum DSM 6724]
          Length = 815

 Score =  340 bits (873), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 90/371 (24%), Positives = 165/371 (44%), Gaps = 38/371 (10%)

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED--------ILRKPFTVFL 501
           E  ++  ILE   DG+ I++    +   N   S++F              +  +  +  +
Sbjct: 342 EREKMKKILENVGDGLVILDGRKRLSMFNNVASEIFQLSFGQAGKRCTEVLKCRNLSGEI 401

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS---LRIIIKKLPFSSCYSLTM 558
             +   +       +        ++        E++++    L     +    + + L +
Sbjct: 402 MCSECPLDKMVFQGL------SLMQYEMKVWNGEKEIILGCNLSGTW-EGRKVTNFILAL 454

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            DIS              +A++    KS+F+A VSHE++TPLTAI G+SE++      P 
Sbjct: 455 RDIS--------------LAKELDRMKSEFVANVSHELKTPLTAIKGYSELLMKMNLPP- 499

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
              R   Y   I +    +  +VNDLL++S+IESG++ L  + V + + + E  +  Q  
Sbjct: 500 --ERVRNYYQIIYKESERLTQLVNDLLEVSRIESGRIELKKDMVEIRKIIKERATFFQTR 557

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738
            ++    I   F      +L D   + Q+  N+L NAI ++P+GG + +       E+++
Sbjct: 558 TSKH--TIVLQFPEYPTFVLGDSARLTQVFHNLLDNAIKYSPNGGNVWVRVA-DKMEDIL 614

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           + V+D GVG+    L      F ++ +S +    GTGLGL + K++V+A+ GK    S  
Sbjct: 615 IEVQDQGVGIPPEHLPHIFDRFYRVDSSLRKSTSGTGLGLSIVKSIVEAHGGKISATSKV 674

Query: 799 AKGTLIEIIFP 809
            +GT   I  P
Sbjct: 675 GEGTTFTIRLP 685


>gi|331268507|ref|YP_004394999.1| sensory transduction histidine kinase [Clostridium botulinum
           BKT015925]
 gi|329125057|gb|AEB75002.1| sensory transduction histidine kinase [Clostridium botulinum
           BKT015925]
          Length = 554

 Score =  340 bits (872), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 98/508 (19%), Positives = 201/508 (39%), Gaps = 21/508 (4%)

Query: 317 EGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA-PKL 375
           E E      +   P   F      + +AN   + L       DI        +     K+
Sbjct: 17  EDEEFYRNLIKILPDAVFFEKDKKIIFANDEGIKLLDGIEKKDIIGKEVEEFIHSNFIKI 76

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
            D N  K +   +S       +     I       + +        N+  E +    I  
Sbjct: 77  LDLNKEKNLNSVKSHNE----NIIEQKIVTLNNKIIDVEVKSIYLFNKNREQIKVV-IVR 131

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILR 494
           +  + +  ++ +         + +    G+ I + + I+   N+    + G    +D+L 
Sbjct: 132 DITERKRYEKALRDSEYLHRKLTQMLPVGVFIHDYD-IVEFANKTCLNILGIKDEKDLLN 190

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC- 553
           K    F+ +         L  I     +   E       +  +++ +          +  
Sbjct: 191 KSIFKFIHKGKIRDSKQRLKTIFEYGEKTLPEFYNKVVRQNGEIIDVETWSTTFYDENKL 250

Query: 554 -YSLTMHDISE------WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG- 605
                  D++E       KQ+ N+         + +  +++F A +SHE++TPL  I+  
Sbjct: 251 KILSVFRDVTEYLEIENIKQKSNENKKLLDKEREFNKIRTEFFANLSHELKTPLNVILSS 310

Query: 606 ---FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
               +  ++N  F  +   +  ++   + ++ N +L ++++L+DI++I+SG  +L+ +  
Sbjct: 311 QQLLALYLRNGEFAGIDYEKIEKHLKTLKQNSNRLLRLIDNLIDITRIDSGFFSLNLQNH 370

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
           ++   + +    V  Y   K I +           L D   +++I LN+LSNA+ FTP G
Sbjct: 371 NIVTIIEDITLSVVEYIKNKDIKLIFDTDIEEKLTLCDEDKIERIILNLLSNAVKFTPKG 430

Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
           G+I ++  H   + + + VRD G+G+   ++      F Q+  S     EG+G+GL L K
Sbjct: 431 GRIKVNI-HDDGDSLRITVRDNGIGIPKDKIHIIFDRFRQVDTSFTRISEGSGIGLSLVK 489

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           A+V+ + G   + S   +G+   I FP+
Sbjct: 490 ALVEMHNGTISVESEYGEGSEFIIYFPI 517



 Score = 43.5 bits (101), Expect = 0.15,   Method: Composition-based stats.
 Identities = 17/171 (9%), Positives = 43/171 (25%), Gaps = 13/171 (7%)

Query: 293 QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLT 352
                +                  + E L  +     P+  F++ +  + +AN + L + 
Sbjct: 121 NREQIKVVIVRDITERKRYEKALRDSEYLHRKLTQMLPVGVFIHDYDIVEFANKTCLNIL 180

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM-------------LYRSDRTCIAASAR 399
             K   D+        +           +K +              + R +   I     
Sbjct: 181 GIKDEKDLLNKSIFKFIHKGKIRDSKQRLKTIFEYGEKTLPEFYNKVVRQNGEIIDVETW 240

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450
             T     +  +   F    +  +      ++    + +D      K+  E
Sbjct: 241 STTFYDENKLKILSVFRDVTEYLEIENIKQKSNENKKLLDKEREFNKIRTE 291


>gi|170738618|ref|YP_001767273.1| multi-sensor signal transduction histidine kinase [Methylobacterium
           sp. 4-46]
 gi|168192892|gb|ACA14839.1| multi-sensor signal transduction histidine kinase [Methylobacterium
           sp. 4-46]
          Length = 764

 Score =  340 bits (872), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 120/672 (17%), Positives = 240/672 (35%), Gaps = 56/672 (8%)

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ--SPPPHLRMKNKVSSLT 244
                   AL    +       E+      V         +      P L +  +   +T
Sbjct: 92  LDGAVPAGALIPGREIHLIGPDEVITASLPVPLPPGRSLGEHLGEAQPLLILGERAGLMT 151

Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ--YFGTLQNNSKESFEY 302
                   +      P      + +   +        +   +                 Y
Sbjct: 152 VGLRGAPALATLRALPGGQQRVAVVQSLDTVTAAWQGRARTEAMVIGTATLVIVCIGLAY 211

Query: 303 LSHRNHPSLSAYF-DEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDD 359
               +         ++        + +     + +    G + Y + S   L  Y    +
Sbjct: 212 TLQADRARAVDRVCEQVRQRLDTALCRGRCGLWDWDIARGRI-YWSDSMYQLLGYTREHE 270

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
               G ++ L+             +    +             I+      + +      
Sbjct: 271 FLSFGDVNALVHPDDTDLYGLASQLAAQDATVD------HEFRIRSAAGEWIWLKARAEI 324

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
             +Q        GI  +  + R          M+L   +EA S+   + + +  ++  N 
Sbjct: 325 VRDQEDGGRHLVGIAIDISEQRRLAESTATADMRLRDAVEAVSEAFVLWDAQNRLVLCNS 384

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
              +L     ED   +P   +      + +     EI + +  +T  +       + + L
Sbjct: 385 KFRRLHALTPEDA--QPGRRYDTIMGRAAVPPVRREIQAGEFAETGARTFEAELADGRWL 442

Query: 540 SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK------------------- 580
            +    ++      Y     DI+  K+ + +L  +++                       
Sbjct: 443 QIS---ERRTKDGGYVSVGTDITALKRHQERLVESERQLIATIADLKRSRRTLELQTQQL 499

Query: 581 ----------------ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
                            +  KS+FLA +SHE+RTPL AI+GF+EV++++ FG LG  +Y 
Sbjct: 500 ADLAERYLDQKAQAESANRSKSEFLANMSHELRTPLNAILGFAEVMQDEVFGHLGCEKYR 559

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           EY   I  SG  +L +++D+LD+S+IE+ ++ L  +P+ + E +   + +V   A  K +
Sbjct: 560 EYCRDIRSSGQYLLSVIDDILDMSRIEARRVTLAKQPLPVAEVLERVLKVVAEAARAKGL 619

Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744
            +      +   +LAD R++ QI LN+L NA+ FTP  G++ + T    +  V + V D+
Sbjct: 620 TLSVEMNADA-VVLADARALHQILLNLLQNAVKFTPDAGRVAVRTRRALDA-VHIYVEDS 677

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G+    L K   PF Q+ ++     +G+GLGL +A+++ + + G+  I S    GT++
Sbjct: 678 GIGIPRTVLPKLGAPFEQVESNLSRSFKGSGLGLAIARSLTELHGGRLRIRSEVGSGTIV 737

Query: 805 EIIFPLYDTSHP 816
            +  P      P
Sbjct: 738 LVRLPQPPGDAP 749



 Score = 43.5 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 25/248 (10%), Positives = 55/248 (22%), Gaps = 10/248 (4%)

Query: 86  TWNID-AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNT 142
            W+ D A G +   S+ + + +G        +   DV+ ++H D  +   +   L  Q+ 
Sbjct: 243 LWDWDIARGRI-YWSDSMYQLLGYTREHEF-LSFGDVNALVHPDDTDLYGLASQLAAQDA 300

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
                          ++ +   A  +  +        G  I                 D 
Sbjct: 301 TVDHEFRIRSAA-GEWIWLKARAEIVRDQEDGGRHLVGIAI--DISEQRRLAESTATADM 357

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPP--PHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
           +     E       +   +  +    S     H            Y              
Sbjct: 358 RLRDAVEAVSEAFVLWDAQNRLVLCNSKFRRLHALTPEDAQPGRRYDTIMGRAAVPPVRR 417

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
            + + E +      F     +    +      ++    S                +    
Sbjct: 418 EIQAGEFAETGARTFEAELADGRWLQISERRTKDGGYVSVGTDITALKRHQERLVESERQ 477

Query: 321 LTPETVDK 328
           L     D 
Sbjct: 478 LIATIADL 485


>gi|113968826|ref|YP_732619.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-4]
 gi|113883510|gb|ABI37562.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-4]
          Length = 1681

 Score =  340 bits (872), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 114/585 (19%), Positives = 214/585 (36%), Gaps = 28/585 (4%)

Query: 235  RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294
                  S L + +A        E      + +  L  ++        +            
Sbjct: 622  DWPELQSILNKAFAQIPQDKAREIQHRWVNVQYDLGLKKQQVFNWAVRIAVAVLLVLFLF 681

Query: 295  NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTK 353
            + +                      +      D          S G +   N + L L K
Sbjct: 682  SLRNRRLNKDIAQRIHTEQQLSLSMHKFQALFDSAVDACVITDSQGVIIECNSALLSLLK 741

Query: 354  YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS----DRTCIAASARLHTIQWNREN 409
            Y+S D +    G  TL+  P+ SD+   + V   R     D+  +   +   T       
Sbjct: 742  YQSKDQL---IGQRTLVYYPEQSDDALNQSVFERRLQTVLDQGQLKFESEFITT-----A 793

Query: 410  SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469
            +  +      K  +   ++   G   +  + ++    +E E   L ++L  +  G+ I  
Sbjct: 794  AEIIHVDVTLKRIELNGSLFVLGSYHDLSERKLMNALLERERDLLKNVLGRSPIGVWIC- 852

Query: 470  REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
             EG+    N  ++++ G      + +          P     ++ E+         E   
Sbjct: 853  VEGVCRYVNEQITEMTGLE----VGQSVYRIFV--QPEDYRCHIRELDLSQDSTVFETQL 906

Query: 530  LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
              +  + + + L          +       DI++ K  +++L+ AK  AE  +  KSDFL
Sbjct: 907  FDAHGQRRDVLLTSYHTVQDGQNANLCWALDITDTKSIQDELAIAKDAAEAANRAKSDFL 966

Query: 590  ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
            A +SHEIRTP+ AI+G S ++           +  +Y   + ++   +L I+ND+LD SK
Sbjct: 967  ANMSHEIRTPMNAILGMSYLVLQTELSS----KQRDYVGKVHQAAGSLLGILNDILDFSK 1022

Query: 650  IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIA 708
            IE+ KM++      LD+ +S   ++V     EK +         +PR    D   + QI 
Sbjct: 1023 IEAEKMDIECTVFDLDDVLSNLANVVSYKVEEKNMAFIFDLPPELPRYYHGDGLRLGQIL 1082

Query: 709  LNILSNAIHFTPSGGQIIISTTHTSNEE---VILRVRDTGVGMTNYELEKAMKPFGQIPN 765
            +N  +NA+ F+ +   +++S       E   +   V D G+G+ + +       F Q+  
Sbjct: 1083 INYCNNAVKFSHNDSSVVLSCQTQQQGEQVELTFCVEDFGIGIPDQKQGVLFGSFEQVDA 1142

Query: 766  SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            S      GTGLGL + K +     G+ +  S    G+   +   L
Sbjct: 1143 STSREYGGTGLGLAICKRLAHLMGGEVWCESELGVGSRFYLRLTL 1187



 Score = 73.1 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/306 (11%), Positives = 92/306 (30%), Gaps = 22/306 (7%)

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLF--YAN-PSFLLL 351
            S +           + +   D+  ++    V              +   + N PS   L
Sbjct: 535 ESLKGKSVSVVAGDITQNHLLDDYPDIVLVPVSNLEQALTAVDKRQVDAAFVNFPSTAHL 594

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS-ARLHTIQWNRENS 410
            +    + ++I                +  +   +       I    AR    +W     
Sbjct: 595 LQSPPFNRLQITAATDYRFGISMGVRKDWPELQSILNKAFAQIPQDKAREIQHRWVNVQY 654

Query: 411 -----------LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459
                       A+          F  ++    +  +       ++++ + + +  ++ +
Sbjct: 655 DLGLKKQQVFNWAVRIAVAVLLVLFLFSLRNRRLNKDIAQRIHTEQQLSLSMHKFQALFD 714

Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRKPFTVFLEQNTPSV-----MNHYL 513
           +  D   I + +G+I+  N A+  L  Y   + ++ +   V+  + +            L
Sbjct: 715 SAVDACVITDSQGVIIECNSALLSLLKYQSKDQLIGQRTLVYYPEQSDDALNQSVFERRL 774

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH 573
             +L     +  E   + +  E   + + +   +L  S     + HD+SE K     L  
Sbjct: 775 QTVLDQGQLK-FESEFITTAAEIIHVDVTLKRIELNGSLFVLGSYHDLSERKLMNALLER 833

Query: 574 AKKIAE 579
            + + +
Sbjct: 834 ERDLLK 839



 Score = 42.3 bits (98), Expect = 0.38,   Method: Composition-based stats.
 Identities = 25/274 (9%), Positives = 69/274 (25%), Gaps = 26/274 (9%)

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL---RMKNKVS 241
                             KF  L +       +   +  I    S    L   + K+++ 
Sbjct: 690 KDIAQRIHTEQQLSLSMHKFQALFDSAVDACVITDSQGVIIECNSALLSLLKYQSKDQLI 749

Query: 242 SLTEYYAHKDDVLKTEKYPLLTSE------ESSLPEQEDFHTINLNQYTKKQYFGTLQ-- 293
                  + +         +          +  L  + +F T              ++  
Sbjct: 750 GQRTLVYYPEQSDDALNQSVFERRLQTVLDQGQLKFESEFITTAAEIIHVDVTLKRIELN 809

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTK 353
            +      Y        ++A  +   +L    + + PI  ++   G   Y N     +T 
Sbjct: 810 GSLFVLGSYHDLSERKLMNALLERERDLLKNVLGRSPIGVWICVEGVCRYVNEQITEMTG 869

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
                 +E+   +  +   P+    +      +   D +  +          + +    +
Sbjct: 870 ------LEVGQSVYRIFVQPEDYRCH------IRELDLSQDSTVFETQLFDAHGQRRDVL 917

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
                   +    N+       +  DT+  + ++
Sbjct: 918 LTSYHTVQDGQNANLCWAL---DITDTKSIQDEL 948


>gi|168182604|ref|ZP_02617268.1| putative phosphate regulon sensor protein [Clostridium botulinum
           Bf]
 gi|237795966|ref|YP_002863518.1| sensor histidine kinase [Clostridium botulinum Ba4 str. 657]
 gi|182674114|gb|EDT86075.1| putative phosphate regulon sensor protein [Clostridium botulinum
           Bf]
 gi|229263502|gb|ACQ54535.1| sensor histidine kinase [Clostridium botulinum Ba4 str. 657]
          Length = 569

 Score =  340 bits (872), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 94/392 (23%), Positives = 174/392 (44%), Gaps = 33/392 (8%)

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
            ++            + ++  +   ++  +  +L +IL++   G+  I++E  ++  N  
Sbjct: 208 EDEIGRLGRTFNAMADILENSLV--EVRDKQNRLEAILKSMDSGVVAIDKEFKVIMINPY 265

Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
            +KLFG    DI+ +     +           L ++L        E   L   K    + 
Sbjct: 266 ANKLFGIKR-DIIGENLMDNIRDFE-------LEKVLKDKEPGYKEIGILWPEKRTLRVK 317

Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
              II K   +      + DI++ K+ +              + +  F+A VSHE++TPL
Sbjct: 318 TTDIISKY-DNIGTVAVVQDITDIKKLE--------------NMREQFVANVSHELKTPL 362

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           T+I GFSE +K      + + +  E +   I+   + +  ++ND+L +S IE  K  L  
Sbjct: 363 TSIKGFSETLKY-----VDDKKNREKFLQIINDEADRLTRLINDILVLSNIEKQKQELIK 417

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719
           E + L+E + +   LV+  A  K I I       +P ++ +     Q+ +N++ NAI +T
Sbjct: 418 EKIDLNELIEKVYCLVKKSAENKNIKINI-VGEKVPLLIGNKDKYNQMIINLVDNAIKYT 476

Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
              G + I T       ++  V DTGVG++   L++  + F ++  ++     GTGLGL 
Sbjct: 477 EPNGYVSIGTK-QDKGNIVFWVEDTGVGISEEHLDRIFERFYRVDKARSRAEGGTGLGLA 535

Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
           + K +V +  GK  + S P KGT   +  PL 
Sbjct: 536 IVKHIVLSINGKIEVKSEPKKGTKFIVKIPLS 567


>gi|117926550|ref|YP_867167.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117610306|gb|ABK45761.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1691

 Score =  340 bits (872), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 94/395 (23%), Positives = 169/395 (42%), Gaps = 17/395 (4%)

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
           E         +  ++     ++   V +  ++L+   D I   +++G +LS N A  +LF
Sbjct: 237 EPEELISRVYQMAESVERYGELNQMVARHKAVLDNAQDAIITTDQQGDVLSYNPAAERLF 296

Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL----EKITLGSTKEEKLLSL 541
           GYP ++++    T  L   +                 + +        +G   + +L+ L
Sbjct: 297 GYPRQNVMGVSLTERLIPESLQNKQAPSLTNAMHGALEMVPNKGRLEAIGKRIDGELIDL 356

Query: 542 RIIIKKLPFSSC---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
           ++ +  +P       Y+  + DI++ KQ    L      AE  S  KS F+A +SHEIRT
Sbjct: 357 QVALSAMPQQGGELHYTAFIQDITDKKQLLKSLEETLSAAESASKAKSAFIANMSHEIRT 416

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
           P+ A++GF+++       P    +  +Y      + + ++ I+ND+LD SK++ G++ L 
Sbjct: 417 PMNAVLGFTDLALRGDLSP----KVRDYLEKTKNASHSLMGIINDILDFSKMDVGRLELD 472

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIH 717
                L   +     L    A +  + +      N  ++   D   ++QI +N++ NA+ 
Sbjct: 473 PVKFDLHFLLERLADLFSKQAADHAVDLVFLAPLNFNQVLYGDAMRLEQIFINLIRNAVK 532

Query: 718 FTPSGGQIIISTTHT--SNEEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
           FT   G I +           V L   V D+G+G+   +L     PF Q  +S   R  G
Sbjct: 533 FT-KNGFITVRAQPELLEGHRVRLTCSVSDSGIGIDPEQLPHLFAPFVQADSSTTRRFGG 591

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           TGLGL + K +V    G  +  S P KG+      
Sbjct: 592 TGLGLSIVKRLVSLMDGSVWAESEPGKGSQFHFEI 626



 Score =  296 bits (759), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 130/724 (17%), Positives = 242/724 (33%), Gaps = 68/724 (9%)

Query: 132  HIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFG--IVHVNRV 189
                 ++ Q  W     L    GT     +DL  L          GF+GF    +   R+
Sbjct: 863  EAMQRIRAQEAWRSLPVLALSTGTGEEEQLDLQDL----------GFQGFLHKPIRPERL 912

Query: 190  DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM------------K 237
                +    R     S     +     + +             +  +             
Sbjct: 913  YGALKRWITRPTLDASWRIVARGDEVPLLRGVDPEIGINRLAGNQELYVVLLSRFFQLYA 972

Query: 238  NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297
              + S+ +        +   +   L +  ++L   E    +   +         +   + 
Sbjct: 973  EVLPSMQQQLQRGQWAVLGRQIHGLRNRAAALGAVELAKAVVALELAMADGHEAMIEAAF 1032

Query: 298  ESF--EYLSHRNHPSLSAYFDEGENLTPETV-DKCPI---------PFFVYSHGNLFYAN 345
            +SF           +      +G  L+   + D  P          P      G L Y +
Sbjct: 1033 QSFSHRLEQVLQGIASHQVEQKGVALSSNLLHDDLPELVVDLHQVGPLLDQLAGRLKYHS 1092

Query: 346  PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405
                 L     +  +      + L  A         +           + A A  + I  
Sbjct: 1093 IDAAAL-----LQALGELLKETPLATAYWTVCKQVDRYNFYEALQSFLLIAKALKYPIID 1147

Query: 406  NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465
                  A         +  P+N+       + ++       +      + +  +   D +
Sbjct: 1148 QNVRCPASVKERILIVDDQPDNVDVL---KDILEDYERMAALSGPEALMLAQCDPAPD-M 1203

Query: 466  AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
             +++           + ++ GY V   L+                  + +     L   +
Sbjct: 1204 VLLDI---------MMPEMNGYEVCRRLKAMEATQEIPVIFVSAKKEVVDEAEGFLIGGV 1254

Query: 526  EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS-EWKQEKNKLSHAKKIAEKESSH 584
            + IT     E     +   ++           +   + E +    +    K  AE  +  
Sbjct: 1255 DYITKPYHGEVVRRRIHSQLELKRHRERLEKQVRMRTAELELATREAELRKDEAEAGNRA 1314

Query: 585  KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
            KS+FLA +SHEIRTPL AI+G  E++                      +G L+L++VN+ 
Sbjct: 1315 KSEFLAIMSHEIRTPLNAILGTHELLSESALSS----EQQRLMEISRNAGELLLNLVNET 1370

Query: 645  LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRS 703
            LD++KIE+GK++L +    L   V E   + ++ A  K + + +  A  +PR ++ D   
Sbjct: 1371 LDLAKIEAGKLDLEYTIFDLPRLVEEITQIKRVAAEHKGVRLESEMALEVPRFVMGDPDR 1430

Query: 704  VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
            ++QI +N+LSNAI FT SG  + +  +    +    +V DTGVG+  + +EK   PF Q 
Sbjct: 1431 LRQILVNLLSNAIKFTNSG-TVSLQMSRGVADRTFFKVSDTGVGIAAHSMEKIFHPFTQA 1489

Query: 764  PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY-------DTSHP 816
              S   +  GTGLGL + K + +A  G   + S    G+   +  PL        + S P
Sbjct: 1490 DTSTTRKFGGTGLGLTICKHLCEAMGGDIQVESQVGVGSTFSVNLPLPRAESSMDEPSAP 1549

Query: 817  HDCI 820
             + I
Sbjct: 1550 EEVI 1553



 Score = 43.9 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 13/147 (8%), Positives = 38/147 (25%), Gaps = 12/147 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID--PNNHIGDLLKR-----QN 141
            D  G +   +    +  G     ++G+ L +      +       + + +        N
Sbjct: 279 TDQQGDVLSYNPAAERLFGYPRQNVMGVSLTERLIPESLQNKQAPSLTNAMHGALEMVPN 338

Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
               +     I+G  + + + L+A+P       ++ F     +             +   
Sbjct: 339 KGRLEAIGKRIDGELIDLQVALSAMPQQGGELHYTAF-----IQDITDKKQLLKSLEETL 393

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQ 228
                  + K    +    +       
Sbjct: 394 SAAESASKAKSAFIANMSHEIRTPMNA 420



 Score = 42.7 bits (99), Expect = 0.28,   Method: Composition-based stats.
 Identities = 24/238 (10%), Positives = 52/238 (21%), Gaps = 4/238 (1%)

Query: 213 GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ 272
                +         Q  P  L + +         A    +        +     S   Q
Sbjct: 157 QVRLAQDGAEAWALLQETPVDLVVTDYEMPNLNGVALTAKLRSRYSRDEMGIMGLSSAGQ 216

Query: 273 EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP 332
            +   ++  +     Y        +                  ++        +D     
Sbjct: 217 SEL-AVDFIKAGANDYINKPYEPEELISRVYQMAESVERYGELNQMVARHKAVLDNAQDA 275

Query: 333 FFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR 391
                  G++   NP+   L  Y   + +     L+  L    L +  A           
Sbjct: 276 IITTDQQGDVLSYNPAAERLFGYPRQNVMG--VSLTERLIPESLQNKQAPSLTNAMHGAL 333

Query: 392 TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449
             +    RL  I    +  L    +      Q    +       +  D +   + +E 
Sbjct: 334 EMVPNKGRLEAIGKRIDGELIDLQVALSAMPQQGGELHYTAFIQDITDKKQLLKSLEE 391


>gi|294497989|ref|YP_003561689.1| two-component sensor histidine kinase/ response regulator [Bacillus
           megaterium QM B1551]
 gi|294347926|gb|ADE68255.1| two-component sensor histidine kinase/ response regulator [Bacillus
           megaterium QM B1551]
          Length = 1012

 Score =  340 bits (872), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 110/408 (26%), Positives = 200/408 (49%), Gaps = 21/408 (5%)

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
            E     G   +  D    + K+        S+L   S+G+   + EG +++ N   +K+
Sbjct: 471 GEVKEVIGSIVDVTDLHEAREKLAKSESMYRSVLSTMSEGVVFHDLEGNLIAANAYAAKI 530

Query: 485 FGYPVEDILRKPF----TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG-STKEEKLL 539
              P + IL           +  +        +  +  L  ++ +    +G    E+KL 
Sbjct: 531 LNVPYDQILSVNPFGLDWEIIHPDGTPFALEDIPSVRCLRTKEPVRNTVMGIYLNEKKLT 590

Query: 540 SLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHA-------KKIAEKESSHKSDFL 589
            L +  + L  S       +T +DI++ ++++  L H+       K+ AEK +  KS+FL
Sbjct: 591 WLSVNAEPLQESKYYKGVVVTFYDITKQQEQEQDLLHSNQQMIIAKEEAEKANQAKSEFL 650

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
           ++VSHE+RTPL +I+G+++ I  ++       + +     I ++GN +L ++N+ LD+SK
Sbjct: 651 SKVSHELRTPLNSILGYAQ-ILEEQGEKDLTEKQLNRIRKILKAGNHLLYLINETLDLSK 709

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN-NIPRILADLRSVKQIA 708
           IESG + ++ EPVS+ EA+ +A+ +++  A +K  ++ T F       +  D    +QI 
Sbjct: 710 IESGHLAINLEPVSVKEAIEDALKIMKPLAKDKHSILYTRFHAYQEVFVEVDELRFQQIL 769

Query: 709 LNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
           LN+L+NAI ++P+   I I T  T +  V + + D G G+   EL +  +PF +I    +
Sbjct: 770 LNLLTNAIKYSPAYRDITIYTEITQH-HVTILIEDRGFGIPASELNRIFEPFYRI---NR 825

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           +  +GTG+GL L K +V    G   + S   KG+   + FPL     P
Sbjct: 826 LEKDGTGIGLALVKQLVVLMNGTCGVRSEEGKGSTFWVRFPLVHPPVP 873



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/162 (11%), Positives = 58/162 (35%), Gaps = 8/162 (4%)

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
           +    +       +   R  +++     S+     + +  ++  G I + N    +L GY
Sbjct: 230 LLIVFLLVAAFKRQEEVRDSQLKEEYYQSLFNYNPNIVCAVDLYGNIQTINPKGIELTGY 289

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
            +  + + PF     +        Y+ + LS D   ++        K+ + + + +    
Sbjct: 290 TLHQMEKIPFPYMFRE--AEKAEEYMWKSLSGD---SVYYEATLIRKDNQPVYVEVTQMP 344

Query: 548 L---PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
           +          +   D+++ K+ + +L   ++  ++  S + 
Sbjct: 345 IIVHGQIKGSYVIAKDVTDRKKAQQQLLDLQEDLKRTLSQQD 386



 Score = 62.7 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/342 (13%), Positives = 101/342 (29%), Gaps = 24/342 (7%)

Query: 282 QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GN 340
           Q        ++       F  ++              E       +  P         GN
Sbjct: 216 QAPFSNMIASITITLLIVFLLVAAFKRQEEVRDSQLKEEYYQSLFNYNPNIVCAVDLYGN 275

Query: 341 LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400
           +   NP  + LT Y           +  +       +    +  M        +   A L
Sbjct: 276 IQTINPKGIELTGYT-------LHQMEKIPFPYMFREAEKAEEYMWKSLSGDSVYYEATL 328

Query: 401 HTIQWNRENSLA-MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459
             I+ + +     +T +P        +      I  +  D +  ++++      L   L 
Sbjct: 329 --IRKDNQPVYVEVTQMPIIV---HGQIKGSYVIAKDVTDRKKAQQQLLDLQEDLKRTLS 383

Query: 460 ATSDGI--AIINREGII-LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
                I   + N EG I       + +  GY   D++ K    FL ++       Y  + 
Sbjct: 384 QQDGAIFKFVKNDEGYIHTMCEGKMIREMGYEEIDVVGKTLEEFLPESYAKENKRYYEKA 443

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKK 576
            + +         L +  +    +  I             ++ D+++  + + KL+ ++ 
Sbjct: 444 WAGEKVS---YEVLLN--DFAYYTKLIPHIYKGEVKEVIGSIVDVTDLHEAREKLAKSES 498

Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
           +     S  S+    V H++   L A   ++  I N  +  +
Sbjct: 499 MYRSVLSTMSE--GVVFHDLEGNLIAANAYAAKILNVPYDQI 538



 Score = 57.7 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 35/377 (9%), Positives = 98/377 (25%), Gaps = 25/377 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL---KRQNTWYG 145
           +D +G ++ I+ +  +  G         ++  +             + +      ++ Y 
Sbjct: 270 VDLYGNIQTINPKGIELTGYTL-----HQMEKIPFPYMFREAEKAEEYMWKSLSGDSVYY 324

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           + TL   +     V +++  +PI   + +  G   + I          +     L +   
Sbjct: 325 EATLIRKDN--QPVYVEVTQMPI-IVHGQIKG--SYVIAKDVTDRKKAQQQLLDLQEDLK 379

Query: 206 HLHEIKKGHSS---VEKEKYDIFSQQS---PPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
                + G         E Y     +            + V    E +  +    + ++Y
Sbjct: 380 RTLSQQDGAIFKFVKNDEGYIHTMCEGKMIREMGYEEIDVVGKTLEEFLPESYAKENKRY 439

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
                    +  +   +            +       +     +   +         + E
Sbjct: 440 YEKAWAGEKVSYEVLLNDFAYYTKLIPHIYKG--EVKEVIGSIVDVTDLHEAREKLAKSE 497

Query: 320 NLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIE-IAGGLSTLLDAPKLSD 377
           ++    +         +   GNL  AN     +        +     GL   +  P  + 
Sbjct: 498 SMYRSVLSTMSEGVVFHDLEGNLIAANAYAAKILNVPYDQILSVNPFGLDWEIIHPDGTP 557

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
             A++ +   R  RT       +  I  N +    ++        +            + 
Sbjct: 558 -FALEDIPSVRCLRTKEPVRNTVMGIYLNEKKLTWLSVNAEPL-QESKYYKGVVVTFYDI 615

Query: 438 VDTRINKRKMEIEVMQL 454
              +  ++ +     Q+
Sbjct: 616 TKQQEQEQDLLHSNQQM 632


>gi|221233560|ref|YP_002515996.1| PAS-family sensor histidine kinase [Caulobacter crescentus NA1000]
 gi|220962732|gb|ACL94088.1| PAS-family sensor histidine kinase [Caulobacter crescentus NA1000]
          Length = 735

 Score =  340 bits (872), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 109/583 (18%), Positives = 223/583 (38%), Gaps = 36/583 (6%)

Query: 251 DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310
              L  E   L+    S          +++             ++ + + E L+      
Sbjct: 24  RRRLGVEALELIRRGTSQNALLGKGFAVDVGASGSDLCLWASGSDGEAARELLTELASLV 83

Query: 311 LSAYFDEGENLTPETVDKCPIPFFVY--SHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
           +    D         +++ P     +    G L   +P++  +      +          
Sbjct: 84  VELVADASPF---AMLEQAPDDLISHYDLTGRLLRVSPAWSRIIGGSVAEAAGRRTWD-- 138

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
              AP+     A     L R +    ++  R+  ++    +   +   P    N      
Sbjct: 139 -FIAPEDHPAVAAYYADLLR-EGAAPSSRLRM-RVRHVAGDIRVLESRPMPIRNAEGVVT 195

Query: 429 PQNGIEPEDVDT--------------RINKRKMEIEVMQLCSILEATSDGIAIINREGII 474
               I  +  +                  + + E    +L  + E+  D    ++  G I
Sbjct: 196 GFVDIARDITEQIETERRYQLALAQAHEARERAEASEWRLRLLAESAQDLTVQVDASGKI 255

Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS--LDLRQTLEKITLGS 532
           L  + +  +L G          F   +  +       ++        D R +L+      
Sbjct: 256 LYASSSADRL-GLANLAQEGASFMSLVHPDETERAATFIAGAFESRGDKRPSLDTELRFL 314

Query: 533 TKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
           + +     +         +    +    T  D+++    +  L  A+  AE     KS F
Sbjct: 315 SVDGDYRWMEGKGWLERDADGVPVALTSTFRDMTDRHSLEESLIAARVRAEAAVRAKSAF 374

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
           LA ++HE+RTPLT++IGF+E I+ +   P  +P     ++ I   G  +L  +ND+LD S
Sbjct: 375 LANMTHELRTPLTSVIGFAEQIQAE---PALSPTVRHASDRISAGGRALLSTINDILDFS 431

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA-DLRSVKQI 707
           K+ESG +++      ++  ++E ++L+ + A+ K + +    +  +    A D + V+Q+
Sbjct: 432 KLESGGVSIVTAATEVNGLIAETVALLSVQADRKGLSLSYDGSAVLGLCAALDSQHVRQV 491

Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
            LN++ NAI FT  GG + ++     +  + + V DTG+G+    LE+    F Q+ ++ 
Sbjct: 492 LLNLIGNAIKFTEQGG-VTVTAQRNDDGMLEIAVADTGIGIAEDHLERLFGRFSQVDDTI 550

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             R  G+GLGL + + + +A  G+  + ST  +G+   +  PL
Sbjct: 551 ARRFGGSGLGLAIGRFLAEAMGGEIQVSSTVGRGSTFTLTLPL 593



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 30/252 (11%), Positives = 64/252 (25%), Gaps = 24/252 (9%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH-IDPNNHIGDLLKRQNTWYGKTT 148
           D  G L  +S    + IG    +  G R  D            +  DLL+       +  
Sbjct: 108 DLTGRLLRVSPAWSRIIGGSVAEAAGRRTWDFIAPEDHPAVAAYYADLLREGAAPSSRLR 167

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVD--------------NDPR 194
           +           ++   +PI +     +GF    I                     ++ R
Sbjct: 168 MRVRHVAGDIRVLESRPMPIRNAEGVVTGF--VDIARDITEQIETERRYQLALAQAHEAR 225

Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV-------SSLTEYY 247
              +  + +   L E  +  +        I    S    L + N         S +    
Sbjct: 226 ERAEASEWRLRLLAESAQDLTVQVDASGKILYASSSADRLGLANLAQEGASFMSLVHPDE 285

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
             +        +     +  SL  +  F +++ +    +      ++         S   
Sbjct: 286 TERAATFIAGAFESRGDKRPSLDTELRFLSVDGDYRWMEGKGWLERDADGVPVALTSTFR 345

Query: 308 HPSLSAYFDEGE 319
             +     +E  
Sbjct: 346 DMTDRHSLEESL 357


>gi|120601381|ref|YP_965781.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4]
 gi|120561610|gb|ABM27354.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4]
          Length = 955

 Score =  340 bits (872), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 116/771 (15%), Positives = 237/771 (30%), Gaps = 63/771 (8%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK 146
           + +D+ G +  +++     +   A  ++G  L  V   +H      +             
Sbjct: 40  FTLDSDGLVVFMNDPFLDLVLRPAADLLGKPLSVVVPAIHA---PLVARAAADILAGTCD 96

Query: 147 TTLWPIEGTNL---------YVPIDLAALPI----------YSRNREFSGFRGFGIV--- 184
             L P+ G               +D    P+             +        F +    
Sbjct: 97  DLLLPVSGQGGTALPVRFRTVHAVDAEGAPVCHAFATHALPRRHDESLRYAELFHLCPVP 156

Query: 185 ---HVNRVDNDPRALGKRL-DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV 240
                           +           E      +    +  I         L    + 
Sbjct: 157 LWQQDVTEAQQAIDTLRTSGVHDLRAYFEAHPHVLAEFARRIRIVDANETASGLFAGCRE 216

Query: 241 SSLTEYYAHKDDVLK--TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE 298
             L      +  + +   E   +L S    L  +     ++  +   +     +      
Sbjct: 217 DLLDPDLFMRLGMRQFVMELLVMLASGADRLSVEAACRALDGGERALQIEARLMPGFGLT 276

Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF--FVYSHG---NLFYANPSFLLLTK 353
               ++     +               V+         +++        +AN +      
Sbjct: 277 GMRVIACGTDITERNRSQAALADFRNLVEAMSDNMIDMLWAKDTECRYIFANRAIRENLL 336

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR---ENS 410
           +   +   + G         +    +      L       +  +      + +       
Sbjct: 337 HSDDE--RVLGRTDLHFAERQRRLGHEHTFGELCIDSDRVVLQTRTSGRFREDGKVQGRY 394

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470
           L +        ++  + +   G   +    +  +  +      L   +EA++D I   + 
Sbjct: 395 LMLDVQKSPLYDRQGKLLGTVGTGRDITLLKAQEDALLRSQQLLKWTVEASTDTIWQYDV 454

Query: 471 -EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
                L  N     L      +          +     ++ H L         +      
Sbjct: 455 VHDRFL-CNNRCPGLLALSDAEDEC-HCRHRADPADAELLLHNLRN--GQGGDKGFSMEL 510

Query: 530 LGSTKEEKLLSLRII--IKKLPFSSCYSLTM---HDISEWKQEKNKLSHAKKIAEKESSH 584
                E     +     + +       +L +    DI+E K+ + +L  A+  AE  +  
Sbjct: 511 RLRDDEGVWHWMYCRGKVVEYDEEGRPTLVVGANTDITERKRFETELRQARDDAEAANKA 570

Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
           KS FLA +SHEIRTPL  ++G  +++++            E  +   +S   +L ++ND+
Sbjct: 571 KSIFLANMSHEIRTPLNGVLGMLQLLEDAPLTS----DQQELLHVASQSSRNLLTVINDI 626

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRS 703
           LD +++ S   +   +P     A+      +   A +K I I T  + N+P +L  D+  
Sbjct: 627 LDFTRLGSVAPSFASDPFDAAGALYTVRDTLATGAKDKDIRIETDISPNVPPLLIGDVTR 686

Query: 704 VKQIALNILSNAIHFTPSGGQIIIST----THTSNEEVI--LRVRDTGVGMTNYELEKAM 757
            +QI  N++ NA+ FT  G  + IS      H+    +   L V D+G+G+    L    
Sbjct: 687 FRQILFNLVGNAVKFTQQG-TVRISLHGLERHSPAGALRMLLMVEDSGIGIPQDMLGNVF 745

Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           +PF Q+  S + R  GTGLGL + +++V    G   I S    GT I    
Sbjct: 746 EPFFQVDGSYRRRYPGTGLGLGIVRSLVHGMGGTIAIDSEEGAGTTIACTL 796



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/372 (10%), Positives = 93/372 (25%), Gaps = 31/372 (8%)

Query: 86  TWNIDAHGYLKEISEELPK-TIGNYAFKMIGMRLCDVS---------DILHIDPNNHIGD 135
            W  D        +  + +  + +   +++G      +                 +    
Sbjct: 315 LWAKDTECRYIFANRAIRENLLHSDDERVLGRTDLHFAERQRRLGHEHTFGELCIDSDRV 374

Query: 136 LLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA 195
           +L+ + +   +     ++G  L + +  +  P+Y R  +  G  G G      +      
Sbjct: 375 VLQTRTSGRFREDG-KVQGRYLMLDVQKS--PLYDRQGKLLGTVGTG--RDITLLKAQED 429

Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL---TEYYAHKDD 252
              R  +      E            +D F   +  P L   +               D 
Sbjct: 430 ALLRSQQLLKWTVEASTDTIWQYDVVHDRFLCNNRCPGLLALSDAEDECHCRHRADPADA 489

Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ-NNSKESFEYLSHRNHPSL 311
            L           +     +          +        ++ +        +      + 
Sbjct: 490 ELLLHNLRNGQGGDKGFSMELRLRDDEGVWHWMYCRGKVVEYDEEGRPTLVVGANTDITE 549

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
              F+       +  +            ++F AN S  + T       +    G+  LL+
Sbjct: 550 RKRFETELRQARDDAEAANKA------KSIFLANMSHEIRTP------LNGVLGMLQLLE 597

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
              L+ +      +  +S R  +     +         + +    PF+ A          
Sbjct: 598 DAPLTSDQQELLHVASQSSRNLLTVINDILDFTRLGSVAPSFASDPFDAAGALYTVRDTL 657

Query: 432 GIEPEDVDTRIN 443
               +D D RI 
Sbjct: 658 ATGAKDKDIRIE 669



 Score = 40.4 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/154 (12%), Positives = 47/154 (30%), Gaps = 16/154 (10%)

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           +L A       ++ +G+++  N     L   P  D+L KP +V +      ++     +I
Sbjct: 31  VLSAIRIPAFTLDSDGLVVFMNDPFLDLVLRPAADLLGKPLSVVVPAIHAPLVARAAADI 90

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW--KQEKNKLSH- 573
           L+      L      S +    L +R        +    +     +    ++    L + 
Sbjct: 91  LAGTCDDLL---LPVSGQGGTALPVRFRTVHAVDAEGAPVCHAFATHALPRRHDESLRYA 147

Query: 574 ----------AKKIAEKESSHKSDFLARVSHEIR 597
                      ++   +             H++R
Sbjct: 148 ELFHLCPVPLWQQDVTEAQQAIDTLRTSGVHDLR 181


>gi|119483445|ref|ZP_01618859.1| adenylate cyclase [Lyngbya sp. PCC 8106]
 gi|119458212|gb|EAW39334.1| adenylate cyclase [Lyngbya sp. PCC 8106]
          Length = 1361

 Score =  340 bits (872), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 83/405 (20%), Positives = 166/405 (40%), Gaps = 41/405 (10%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLF--GYPVE---DILRKPFT 498
            ++     +L   LE+   G+ + +  +  ++  N+    LF  G   +   +   + + 
Sbjct: 438 ERLSQSETRLYQFLESLPVGVLVYDGVQDKLMFMNQTAQALFRKGIIPDTSLETFSQTYQ 497

Query: 499 VFLEQNTP--SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--- 553
           ++L             L   L     ++            +++   ++ + +        
Sbjct: 498 LYLAGTDKIYPAKALPLIRALKGKSLKSENIEIRHRD---QVIPCEVLAQPIYDCDHNII 554

Query: 554 -YSLTMHDISEWKQEKNKLSHAKKIAEKESSH-------KSDFLARVSHEIRTPLTAIIG 605
              +   DI++ KQ + +  +     + ++         K +FLA  SHE+RTPL  +IG
Sbjct: 555 YAVVVFEDITQRKQAEVERHNFTAQLKLKNEALERLDKLKDEFLANTSHELRTPLNGMIG 614

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
            +E +     G L      +    I  SG+ +  +VND+LD SK+    + L  +P  L 
Sbjct: 615 IAESMLEGATGTLS-ELQRKNLIMIAHSGHRLSTLVNDILDFSKLRHNTIRLQVKPTGLR 673

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725
           E     ++L Q     K + +    + ++P + AD   ++QI  N++ NA+ FT  G  I
Sbjct: 674 EITEIVLTLNQSLVRNKDLQLINDISPDLPLVKADENRLQQILHNLVGNAVKFTERGS-I 732

Query: 726 IISTTH-----------------TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
            +S                     +N ++ + V DTG+G+   ++ +  + F Q   S  
Sbjct: 733 TVSAQVISWDENSDNHQPKVDQKATNSQIAVTVSDTGIGIPANKINRIFESFEQADGSTA 792

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
            +  GTGLGL + K +V+ + GK ++ S    G+      P+++ 
Sbjct: 793 RQFSGTGLGLAVTKQLVELHGGKIWVESIENVGSNFIFTLPIFEE 837


>gi|75908887|ref|YP_323183.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
 gi|75702612|gb|ABA22288.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
          Length = 708

 Score =  340 bits (872), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 99/437 (22%), Positives = 176/437 (40%), Gaps = 27/437 (6%)

Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450
              +   A L   Q + E  + +       AN+         ++ E  + +     +   
Sbjct: 140 GERLKVEAELRKYQNHLEELVNIRTNEITNANEK--------LQQEIHERQRIVEILRES 191

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
             +   + EA    +   +  G     N+      G  +E+ L   +   L         
Sbjct: 192 EERYRYLAEAIPQLVWTADANGECDYFNQNWCDYTGLTLEESLGSGWLAALHLEDLERSY 251

Query: 511 HYLTEILSLDLRQTLEKITLG-STKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWK 565
              ++ +        E         +     L      L         +  T  DI E K
Sbjct: 252 ETWSKAVETGT--LYENEYRFKRAADGSYRWLLGRGLPLKDHQGRVVKWFGTCTDIHEQK 309

Query: 566 QEKNKL-------SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
           Q   +          A+  AE  +  K +FLA +SHE+RTPL AI+G+S++++ ++  P 
Sbjct: 310 QILEERARLLELEQTARAEAETANRIKDEFLAVLSHELRTPLNAILGWSKLLQERKLEP- 368

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
              R  +    I+R+  L + ++ DLLDIS+I  GK+ ++   V+L   +  A+  ++L 
Sbjct: 369 --ARTFQALATIERNATLQVQLIEDLLDISRILQGKLVINITKVNLVIVILTALETMRLA 426

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738
           A  K I + T+F + + +++ D   ++Q+  N+LSNA+ FTP GG+I +S          
Sbjct: 427 AESKLIQVSTNFPSKMGQVMGDSARLQQVVWNLLSNAVKFTPKGGKIEVSLEKVD-GYAQ 485

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-T 797
           + V DTG G+    L      F Q  +S   R  G GLGL + + +V+ + G     S  
Sbjct: 486 IVVSDTGKGIKPEFLPYVFDYFRQADSSSTRRFGGLGLGLAIVRKIVEIHGGTVTAQSLG 545

Query: 798 PAKGTLIEIIFPLYDTS 814
             +G    +  P+    
Sbjct: 546 EEQGASFTVRLPILPEE 562



 Score = 71.2 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 20/168 (11%), Positives = 45/168 (26%), Gaps = 3/168 (1%)

Query: 69  DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID 128
           +SE  + +       +  W  DA+G     ++      G    + +G        +  ++
Sbjct: 190 ESEERYRYLAEAIP-QLVWTADANGECDYFNQNWCDYTGLTLEESLGSGWLAALHLEDLE 248

Query: 129 PNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNR 188
            +           T Y     +       Y  +    LP+          + FG      
Sbjct: 249 RSYETWSKAVETGTLYENEYRFKRAADGSYRWLLGRGLPLKDHQGRVV--KWFGTCTDIH 306

Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM 236
                     RL +         +  + ++ E   + S +   P   +
Sbjct: 307 EQKQILEERARLLELEQTARAEAETANRIKDEFLAVLSHELRTPLNAI 354


>gi|159185161|ref|NP_355290.2| two component sensor kinase/response regulator hybrid
           [Agrobacterium tumefaciens str. C58]
 gi|159140432|gb|AAK88075.2| two component sensor kinase/response regulator hybrid
           [Agrobacterium tumefaciens str. C58]
          Length = 1231

 Score =  340 bits (872), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 125/765 (16%), Positives = 254/765 (33%), Gaps = 63/765 (8%)

Query: 90  DAHGYLKEISEELPKTI---------GNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ 140
           D    L   +    +           G     ++             +      D +++Q
Sbjct: 160 DRDNQLVYCNARFAEFYSDLDIELKPGIRLEALMKTLYSSSVYRCAKNDGPSFEDWMQKQ 219

Query: 141 NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
              +    L  +E       + +    +   N    G R    V   +      +   R 
Sbjct: 220 LHDFSLPYLERVEQFADGRWVRMVNKRL--ENGMLVGLR--VDVTEFKAHETLLSTQIRE 275

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSP---PPHLRMKNKVSSLTEYYAHKDDVLKTE 257
                   E       +  +   +    +         + + +         ++     +
Sbjct: 276 TWLLRAALEQLPVGVFLRDQDRRLTYANAAYNTFLGGNLADHIGKTETEMFPQNGPRFRQ 335

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN------NSKESFEYLSHRNHP-- 309
           +   +     ++    +    +          G +              +    ++    
Sbjct: 336 ENERILQTGEAIERTGNMPWRDGGAVPVITRLGRVATPDDEYYLVGSVTDVSLLQDREKA 395

Query: 310 --SLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVD-------- 358
             +  A  +         +   P+   + +    + Y NP F  +      +        
Sbjct: 396 LIAAQAEAEALHRQLQAVLRALPVGVLLLNADLVIEYVNPFFYQVWGEIGGEKSLVGKSY 455

Query: 359 -DIEIAGGLSTLLD-APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
            +       S L D   +  D+   + V                  ++        ++  
Sbjct: 456 REFMEMNFDSGLYDYGDRPFDDVYEERVQRLLKADAFAP-----REVRSKSGKVTVISKT 510

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476
             E             +   D +    + ++E     +     A + G+ ++  +G I+ 
Sbjct: 511 RLEGGKILSTYADVTDVRMRDAEISKARAELERVGEYMQGATRAMAQGLVLV-EQGTIIM 569

Query: 477 TNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
           +N A++++F  P   +   + +  F                        + +  + + + 
Sbjct: 570 SNEAMARMFDVPPHLLEKGRNWAGFFAHC---AGRGDFGTAAEAGETLRIWRENIAANRP 626

Query: 536 EKLL-------SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
              L        L +        + + + + D++E K  + +L      AE     KS+F
Sbjct: 627 FSWLVHVAGKSWLNLEAT-NSSGNYWLIIVTDVTEMKVREEELQRLLSRAEAADRAKSEF 685

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
           LA +SHEIRTP+  ++G +E++   +       R   + + I +SGN +L I+ND+LD S
Sbjct: 686 LANMSHEIRTPMNGVLGMAELLAKSKLDT----RQKTFTDIIVKSGNALLTIINDILDFS 741

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQI 707
           KIE+G+M L   P    EAV + +SL+   A EK I +      ++  +++ D    +QI
Sbjct: 742 KIEAGQMKLRSVPFDPAEAVEDVVSLLSSAALEKDIELIVRIDASVSGKVIGDAGRFRQI 801

Query: 708 ALNILSNAIHFTPSGGQ-IIISTTHTSNEE--VILRVRDTGVGMTNYELEKAMKPFGQIP 764
             NI+ NA+ FT +G   + +S       E    LRV D+G+G+   +LE     F Q+ 
Sbjct: 802 VTNIVGNAVKFTETGHVLVELSAQSAEASESIFSLRVEDSGIGIPVDKLETIFDKFSQVD 861

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            S   R EGTGLGL +   +V    GK  + S   +G+  E+  P
Sbjct: 862 GSATRRHEGTGLGLAITVGLVGLFDGKINVVSEVGRGSAFEVDIP 906



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/278 (11%), Positives = 85/278 (30%), Gaps = 26/278 (9%)

Query: 324 ETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
             V    +P  +          N ++  +   ++    E    LS L    + ++    +
Sbjct: 22  RAVAALELPACIKDGELRYVVVNEAYGRVMG-RAPSAFEGQTSLS-LSGDIRDAEREDRE 79

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
              L  +    IA  A L         S  +    F   +            P  V  + 
Sbjct: 80  RRSLVFATDEAIACHAALSA------QSHMLRCERFIGDDGSLFLFEVFEEMPSAVSRKS 133

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF---------GYPVEDIL 493
                  +++    +++    GI + +R+  ++  N   ++ +         G  +E ++
Sbjct: 134 AAVGGASDILFSSGVMDFIDAGIVVYDRDNQLVYCNARFAEFYSDLDIELKPGIRLEALM 193

Query: 494 RKPFT---VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
           +  ++       +N       ++ + L       LE+  +    + + + +   + K   
Sbjct: 194 KTLYSSSVYRCAKNDGPSFEDWMQKQLHDFSLPYLER--VEQFADGRWVRM---VNKRLE 248

Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
           +        D++E+K  +  LS   +      +     
Sbjct: 249 NGMLVGLRVDVTEFKAHETLLSTQIRETWLLRAALEQL 286


>gi|312899665|ref|ZP_07758989.1| PAS domain S-box [Enterococcus faecalis TX0470]
 gi|311293171|gb|EFQ71727.1| PAS domain S-box [Enterococcus faecalis TX0470]
          Length = 609

 Score =  340 bits (872), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 84/418 (20%), Positives = 181/418 (43%), Gaps = 29/418 (6%)

Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
              R   I+  R +      +     ++  +         E ++    +  ME E  +L 
Sbjct: 207 GEMREQAIRIARGDYAG--KVEVHGKDELGQLAETFNQLSERIEE--AQETMEAERNRLD 262

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           S+L   +DG+   +R G +++ N     L     E+++       L+          L +
Sbjct: 263 SVLTHMTDGVIATDRRGKVITINEMALSLLNVKNENVIGTSLLELLDIEEDYT----LRK 318

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSH 573
           +L       +++ T    +++ ++ +   + +      +     +HD++E ++ + +   
Sbjct: 319 LLEEPDELLIDRSTSDREEDQMIIWVDFTMIRRESGFITGLVCVLHDVTEQEKNERE--- 375

Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
                      + +F++ VSHE+RTPLT++  + E +    +          +       
Sbjct: 376 -----------RREFVSNVSHELRTPLTSMRSYIEALSEGAW--ENPEIAPNFLKVTLEE 422

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN--EKRILIRTSFA 691
            + ++ ++NDLL++S+++SG  +L  E V+ +E ++  +    +     +K   IR  F 
Sbjct: 423 TDRMIRMINDLLNLSRMDSGNTHLQLEYVNFNELINFVLDRFDMMIENEQKNYKIRREFT 482

Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751
                +  D   V Q+  NIL+NAI ++P GG I       ++  V+  + D G+G+   
Sbjct: 483 KRDLWVELDTDKVIQVLDNILNNAIKYSPDGGVITCRL-VETHNNVVFSISDQGLGIPKK 541

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +L K  + F ++  ++     GTGLGL ++K ++ A+ G  ++ ST  +G+   I  P
Sbjct: 542 DLGKVFERFYRVDKARARAQGGTGLGLAISKEVIRAHNGSIWVESTEGEGSTFYISLP 599



 Score = 40.4 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/143 (13%), Positives = 43/143 (30%), Gaps = 7/143 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            D  G +  I+E     +      +IG  L ++   L I+ +  +  LL+  +      +
Sbjct: 275 TDRRGKVITINEMALSLLNVKNENVIGTSLLEL---LDIEEDYTLRKLLEEPDELLIDRS 331

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               E   + + +D     I   +   +G     ++H            +      SH  
Sbjct: 332 TSDREEDQMIIWVDFTM--IRRESGFITGL--VCVLHDVTEQEKNERERREFVSNVSHEL 387

Query: 209 EIKKGHSSVEKEKYDIFSQQSPP 231
                      E     + ++P 
Sbjct: 388 RTPLTSMRSYIEALSEGAWENPE 410


>gi|328954529|ref|YP_004371863.1| multi-sensor signal transduction histidine kinase [Desulfobacca
           acetoxidans DSM 11109]
 gi|328454853|gb|AEB10682.1| multi-sensor signal transduction histidine kinase [Desulfobacca
           acetoxidans DSM 11109]
          Length = 824

 Score =  340 bits (872), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 116/652 (17%), Positives = 223/652 (34%), Gaps = 39/652 (5%)

Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS 242
           +    R+            K    +     G   +      +    S    L   N    
Sbjct: 192 LCQDLRISERRYRRIFEGSKDMILVVAPGGGLLDINPAGIAMLGLASKSQALETVNLQDC 251

Query: 243 L-TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301
                   +   L      +   E + L        + L+   +    G L +    +  
Sbjct: 252 FYPWRDWERFRQLLKVHGSVQDFEATLLKGDGGAIQVLLSGAARNNQAGHLVSLDIIAK- 310

Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDI 360
                          + +  T   ++  P+P F +     + Y N +   LT Y     I
Sbjct: 311 --DITERKRNEQELLQEKKTTEGILEGLPVPAFVINRQHRIIYWNKACEELTGYSRQQMI 368

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR------------TCIAASARLHTIQWNRE 408
           +            + +  + +    +   ++               A  A +   Q    
Sbjct: 369 DSKKQWLPFYTQERPTLADLVVDQNIKALEKYYNKQKLHKSIHFPGAYEASIQFPQPAGG 428

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468
           +   +  +     N   + +       +  +       +     +   ++EA+ DGIA+ 
Sbjct: 429 DRY-LFLVASPIFNDRGQIIGAVQAMLDFTERERLAHNLMESEEKYRLLVEASLDGIALH 487

Query: 469 NREGIILSTNRAVSKLFGYP-VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
            R   ++  N A   +FGY   E++   P   F+       +  +L EI     R  +  
Sbjct: 488 TRN-QVMFANSAFLNMFGYSCPEELTGVPLLSFISPIHHPPLLRHLREINRQFNRPRI-F 545

Query: 528 ITLGSTKEEKLLSLRII--IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
              G  K+     + ++           +   + DI+E K+ +++L+ ++K+A       
Sbjct: 546 EIKGMKKDGSEFDIEVVSFPTIFGGQRAFQTHIRDITEKKRLEDQLARSEKLA-----AV 600

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
               A V+HEI  PL  I+ +S  +  +   P    R       I R      +I+  LL
Sbjct: 601 GQLSAGVAHEINNPLGGILVYS-YLMLEDLAPDRPERQQ--VEKIIREATRCKEIIKGLL 657

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
           D S+    +     +PV L+  ++E +SLV+ + N + + I+   A  +P +L D   ++
Sbjct: 658 DFSR----QQPFRLKPVDLNSMLAELLSLVENHLNFQDVGIKKKLAPELPPVLGDKNKLE 713

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           Q+ +N+  NA H     G + ++T       V +RV D G G+    L +   PF     
Sbjct: 714 QVFINLFMNASHAMAGHGVLTVATGQNVLGAVEIRVSDNGPGIHPEHLHRIFDPFF---- 769

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
           S +  G G GLGL ++  ++  + G+ Y+ ST   G    I  P      P 
Sbjct: 770 STKEVGRGVGLGLSISYGIIKQHRGRIYVDSTAPGGATFVIELPATRPETPQ 821


>gi|295319850|gb|ADG00228.1| putative phosphate regulon sensor protein [Clostridium botulinum F
           str. 230613]
          Length = 522

 Score =  340 bits (872), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 88/392 (22%), Positives = 171/392 (43%), Gaps = 33/392 (8%)

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
            ++            + ++  +   ++  +  +L +IL++   G+  I++E  ++  N  
Sbjct: 161 DDEIGRLGRTFNAMADILENSLV--EVRDKQNRLEAILKSMDSGVVAIDKEFKVIMINPY 218

Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
            +KLFG   + I         +     V+         + +    ++     T +     
Sbjct: 219 ANKLFGIKRDIIGENLMDNIRDFELEKVLKDKELGYKEIGILWPEKRTLRVKTTD----- 273

Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
               I     +      + DI++ K+ +              + +  F+A VSHE++TPL
Sbjct: 274 ----IISKYDNIGTVAVVQDITDIKKLE--------------NMREQFVANVSHELKTPL 315

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           T+I GFSE +K      + + +  E +   I+   + +  ++ND+L +S IE  K  L  
Sbjct: 316 TSIKGFSETLKY-----VDDKKNREKFLQIINDEADRLTRLINDILVLSNIEKQKQELIK 370

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719
           E + L+E + +   LV+  A +K I I       +P ++ +     Q+ +N++ NAI +T
Sbjct: 371 EKIDLNELIEKVYCLVKKSAEDKNIRINI-VGEKVPLLIGNKDKYNQMIINLVDNAIKYT 429

Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
              G + I T       ++  V DTGVG++   L++  + F ++  ++     GTGLGL 
Sbjct: 430 EPNGYVSIGTK-QDKGNIVFWVEDTGVGISEEHLDRIFERFYRVDKARSRAEGGTGLGLA 488

Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
           + K +V +  GK  + S P KGT   +  PL 
Sbjct: 489 IVKHIVLSINGKIEVKSEPKKGTKFIVKIPLS 520


>gi|153941140|ref|YP_001391824.1| putative phosphate regulon sensor protein [Clostridium botulinum F
           str. Langeland]
 gi|152937036|gb|ABS42534.1| putative phosphate regulon sensor protein [Clostridium botulinum F
           str. Langeland]
          Length = 569

 Score =  340 bits (872), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 88/392 (22%), Positives = 171/392 (43%), Gaps = 33/392 (8%)

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
            ++            + ++  +   ++  +  +L +IL++   G+  I++E  ++  N  
Sbjct: 208 DDEIGRLGRTFNAMADILENSLV--EVRDKQNRLEAILKSMDSGVVAIDKEFKVIMINPY 265

Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
            +KLFG   + I         +     V+         + +    ++     T +     
Sbjct: 266 ANKLFGIKRDIIGENLMDNIRDFELEKVLKDKELGYKEIGILWPEKRTLRVKTTD----- 320

Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
               I     +      + DI++ K+ +              + +  F+A VSHE++TPL
Sbjct: 321 ----IISKYDNIGTVAVVQDITDIKKLE--------------NMREQFVANVSHELKTPL 362

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           T+I GFSE +K      + + +  E +   I+   + +  ++ND+L +S IE  K  L  
Sbjct: 363 TSIKGFSETLKY-----VDDKKNREKFLQIINDEADRLTRLINDILVLSNIEKQKQELIK 417

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719
           E + L+E + +   LV+  A +K I I       +P ++ +     Q+ +N++ NAI +T
Sbjct: 418 EKIDLNELIEKVYCLVKKSAEDKNIRINI-VGEKVPLLIGNKDKYNQMIINLVDNAIKYT 476

Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
              G + I T       ++  V DTGVG++   L++  + F ++  ++     GTGLGL 
Sbjct: 477 EPNGYVSIGTK-QDKGNIVFWVEDTGVGISEEHLDRIFERFYRVDKARSRAEGGTGLGLA 535

Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
           + K +V +  GK  + S P KGT   +  PL 
Sbjct: 536 IVKHIVLSINGKIEVKSEPKKGTKFIVKIPLS 567


>gi|307945461|ref|ZP_07660797.1| Non-motile and phage-resistance protein [Roseibium sp. TrichSKD4]
 gi|307771334|gb|EFO30559.1| Non-motile and phage-resistance protein [Roseibium sp. TrichSKD4]
          Length = 790

 Score =  340 bits (872), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 113/546 (20%), Positives = 225/546 (41%), Gaps = 49/546 (8%)

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSH--GNLFYANPSFLLLTKYKSVDDIEIAG 364
                   +          ++      F +    G + + + S   +  +K  D +    
Sbjct: 250 RAEQADEIYAATRTRIDTALNHGRCGLFDWDLSRGRI-FWSSSLYEMLGHKPKDSLLSFA 308

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
            ++ L     +          L  +    +    ++  ++    + + +      ++   
Sbjct: 309 EVADLTHPDDVDLYELATE--LLEAGGGIVD---KMFRMRHANGSWVWLRARGEIQSEPG 363

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
                  GI  +  +    + +     ++L   +E  S+   + N+   ++  N    +L
Sbjct: 364 RSEPHLIGICIDVTEQHRLEEQSRTADLRLRDAIETISEAFVLWNKNNELVICNSNYQEL 423

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
            G P   +        +     +         +S  +    E        + + L +   
Sbjct: 424 HGLPTHAVTPGTPYKDVMAAAENTQVAPQPVKISQRVDAP-EGSYEAQLDDGRWLQIS-- 480

Query: 545 IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK------------------------ 580
            ++      +     DI+  K+ + +L   +K                            
Sbjct: 481 -ERRTKDGGFVSVGTDITALKRHEEQLIDREKELNATVDDLTRSRKTLQLQAKQLEELAD 539

Query: 581 -----------ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
                       +  KS+FLA +SHE+RTPL AIIGFS+++  + FGPLG  +Y +Y + 
Sbjct: 540 KYSEERNRAENANKAKSEFLANISHELRTPLNAIIGFSDIMNKEMFGPLGTEKYSDYCHD 599

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I  SG  +L+++ND+LD+SKIE+G+M++  E +S  EA  +A  ++   A EK I +  +
Sbjct: 600 IHNSGTYLLNVINDILDMSKIEAGRMSIETEDLSAKEAAEDAARIMSTAAREKHIDVTCT 659

Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749
             + I ++ AD R++KQI LN+L+NA+ FTP  G + +   H     +   + DTG+G+ 
Sbjct: 660 VEDGI-QVRADRRALKQILLNLLANAVKFTPEHGTVSLK-AHQEKNRICFEISDTGIGIA 717

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           + ++ +  +PF Q+ N      +G+GLGL +A+++++ + GK  I S   +GT +  + P
Sbjct: 718 DKDIARLAQPFVQVENQFTKTHQGSGLGLAIARSLIEIHGGKLEISSELGEGTHVRFLLP 777

Query: 810 LYDTSH 815
             D S 
Sbjct: 778 SSDPSA 783



 Score = 43.1 bits (100), Expect = 0.22,   Method: Composition-based stats.
 Identities = 31/249 (12%), Positives = 62/249 (24%), Gaps = 9/249 (3%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIG--MRLCDVSDILHIDPNNHIGDLLKRQNT 142
           F W++   G +   S  L + +G+     +     + D++    +D      +LL+    
Sbjct: 277 FDWDLSR-GRI-FWSSSLYEMLGHKPKDSLLSFAEVADLTHPDDVDLYELATELLEAGGG 334

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
              K         + +V +           R      G  I       +      +  D 
Sbjct: 335 IVDKMFRMRHANGS-WVWLRARGEIQSEPGRSEPHLIGICI--DVTEQHRLEEQSRTADL 391

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSP--PPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
           +     E       +  +  ++    S     H    + V+  T Y         T+  P
Sbjct: 392 RLRDAIETISEAFVLWNKNNELVICNSNYQELHGLPTHAVTPGTPYKDVMAAAENTQVAP 451

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
                   +   E  +   L+     Q       +                     + E 
Sbjct: 452 QPVKISQRVDAPEGSYEAQLDDGRWLQISERRTKDGGFVSVGTDITALKRHEEQLIDREK 511

Query: 321 LTPETVDKC 329
               TVD  
Sbjct: 512 ELNATVDDL 520


>gi|256376496|ref|YP_003100156.1| multi-sensor hybrid histidine kinase [Actinosynnema mirum DSM
           43827]
 gi|255920799|gb|ACU36310.1| multi-sensor hybrid histidine kinase [Actinosynnema mirum DSM
           43827]
          Length = 1433

 Score =  340 bits (872), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 115/628 (18%), Positives = 222/628 (35%), Gaps = 25/628 (3%)

Query: 198 KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257
           + L + ++   EI++ + +      D  + +     L+ +N +   T        ++   
Sbjct: 309 RALVRSYAERPEIREANFAEGVGALD--AVREAVTSLQRQNPMFEATWAMDADGTLVAVS 366

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN-------SKESFEYLSHRNHPS 310
             P      +          ++       Q +  L+ +       +             +
Sbjct: 367 PGPSTPPRNNFAYRDYFQGALSTGGPYVSQVYEGLRADHPELVAIAAPVRVGSEIVGVIA 426

Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
            S           E      +   V   G          +      + D +IA  L    
Sbjct: 427 TSFPIGALTGFVSEVAAGQDVRLAVADRGGSLLTGEQLGVPGLTSGLGDPQIAAALRGQQ 486

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARL-HTIQWNRENSLAMTFIPFEKANQFPENMP 429
                  ++               A  A +     +          +           + 
Sbjct: 487 GRATTGPDDNPVETSYRSVPGLGWAVVASIDSRTAFAGVARFTGRVLAVTTLLLQMLLVG 546

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
                  +   R+ + ++        SIL A  D    I  +GI+   N +  ++FG+  
Sbjct: 547 LVVTVRGERRGRLAEERLARSAAHTDSILNAAGDAFVTIRPDGIVTRWNSSAERIFGWTG 606

Query: 490 EDILRKPFTVFLEQNTPSV-MNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIII- 545
           E+ L       +  +         +  I+       L   +  +   K+       + + 
Sbjct: 607 EEALGSALVDLVVPDPQRADHLSGVRRIIEGSRPTVLGTTREVVARRKDRSEFPAELTLW 666

Query: 546 -KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
                    +S  + DI+E K  + +++ A+  A   S  KS F+A +SHEIRTPL  +I
Sbjct: 667 SSHYEDRRVFSAFIRDITERKAAEEEIARARDEALSASRMKSAFVANMSHEIRTPLNGVI 726

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           G              + R  +YA  +  S + +L ++ND+LD SKIE+GK+ +       
Sbjct: 727 GL----TELLLDTDLDCRQRDYAQTLQNSADALLAVINDILDFSKIEAGKLEIDPVDFDP 782

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG 723
              V + +SL+   A    + I       +P  ++ D   V+Q+ +N++SNAI FTP G 
Sbjct: 783 RALVEDVVSLLAASAQAAGLEIAAVVHPPMPPTLVGDAHRVRQVLVNLVSNAIRFTPKGE 842

Query: 724 QII-ISTTH----TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
            ++ +         S  EV   V DTG+G+ +   +   + F Q+  S   +  GTGLGL
Sbjct: 843 VVVWVDVAPAAPGESGHEVTFTVADTGIGIPDERQQHLFEAFTQVDASTTRQYGGTGLGL 902

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEI 806
            ++K +V+   G+  + S P +G++   
Sbjct: 903 TISKQLVELMGGEMGLASEPGEGSVFYF 930



 Score = 57.7 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 35/376 (9%), Positives = 82/376 (21%), Gaps = 44/376 (11%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
           TW +DA G L  +S       G                  +    ++    L     +  
Sbjct: 353 TWAMDADGTLVAVSP------GPSTP-----------PRNNFAYRDYFQGALSTGGPYVS 395

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +      EG     P  +A         E  G                 +          
Sbjct: 396 QVY----EGLRADHPELVAIAAPVRVGSEIVGV--IATSFPIGALTGFVSEVAAGQDVRL 449

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK---NKVSSLTEYYAHKDDVLKTEKYPLL 262
            + +      + E+      +     P +       +  + T    +  +        L 
Sbjct: 450 AVADRGGSLLTGEQLGVPGLTSGLGDPQIAAALRGQQGRATTGPDDNPVETSYRSVPGLG 509

Query: 263 TSEESSLPEQEDFHTINL--NQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
            +  +S+  +  F  +     +                       R              
Sbjct: 510 WAVVASIDSRTAFAGVARFTGRVLAVTTLLLQMLLVGLVVTVRGERRGRLAEERLARSAA 569

Query: 321 LTPETVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSVDDIE---------------IAG 364
            T   ++     F       +    N S   +  +   + +                   
Sbjct: 570 HTDSILNAAGDAFVTIRPDGIVTRWNSSAERIFGWTGEEALGSALVDLVVPDPQRADHLS 629

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
           G+  +++  + +     + V+  R DR+   A   L +  +      +       +    
Sbjct: 630 GVRRIIEGSRPTVLGTTREVVARRKDRSEFPAELTLWSSHYEDRRVFSAFIRDITERKAA 689

Query: 425 PENMPQNGIEPEDVDT 440
            E + +   E      
Sbjct: 690 EEEIARARDEALSASR 705



 Score = 41.9 bits (97), Expect = 0.49,   Method: Composition-based stats.
 Identities = 23/281 (8%), Positives = 66/281 (23%), Gaps = 18/281 (6%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL--HIDPNNHIGDLLKRQNT----WY 144
             G +   +    +  G    + +G  L D+        D  + +  +++          
Sbjct: 587 PDGIVTRWNSSAERIFGWTGEEALGSALVDLVVPDPQRADHLSGVRRIIEGSRPTVLGTT 646

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            +      + +     + L +   Y   R FS F     +              R   + 
Sbjct: 647 REVVARRKDRSEFPAELTLWSS-HYEDRRVFSAF-----IRDITERKAAEEEIARARDEA 700

Query: 205 SHLHEIKKGHSSVEKEKYD-----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
                +K    +    +       +           +  +     +   +  D L     
Sbjct: 701 LSASRMKSAFVANMSHEIRTPLNGVIGLTELLLDTDLDCRQRDYAQTLQNSADALLAVIN 760

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
            +L   +    + E        +   +     L  +++ +   ++   HP +        
Sbjct: 761 DILDFSKIEAGKLEIDPVDFDPRALVEDVVSLLAASAQAAGLEIAAVVHPPMPPTLVGDA 820

Query: 320 NLTPE-TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDD 359
           +   +  V+           G +                + 
Sbjct: 821 HRVRQVLVNLVSNAIRFTPKGEVVVWVDVAPAAPGESGHEV 861


>gi|90021056|ref|YP_526883.1| Signal transduction histidine kinase-like protein [Saccharophagus
           degradans 2-40]
 gi|89950656|gb|ABD80671.1| ATP-binding region, ATPase-like protein [Saccharophagus degradans
           2-40]
          Length = 685

 Score =  340 bits (872), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 110/537 (20%), Positives = 219/537 (40%), Gaps = 25/537 (4%)

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC-PIPFFVYS-HGNLFYANPSFLLL 351
           +    S +     +  +      E                F  +         N  F   
Sbjct: 5   SEVITSRKRQQRSSLGARLRAMQEVRQRYERIFRGSHGYGFVDWDFKNRKMDWNGGFWAY 64

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411
             Y   D                 +D+ A     +    +   +    +  I+  +   +
Sbjct: 65  LGYGETDM--EHISSPGQFMEYVHTDDRAKVNNFVLGELKGVGSGEL-VFRIRKKKGGYI 121

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471
                     +        +G+  +    +  ++ + I   +   I+++++DGI   + +
Sbjct: 122 WAEVRVDNVRDSQGRVSFMSGVVFDVTKQKQTEQALLISEARHARIIQSSNDGIWEWSAD 181

Query: 472 -GIILSTNRAVSKLFGYPVEDIL-------RKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
            G    +NR    L GY   D          + +   +      + +  L + +  +   
Sbjct: 182 HGGFQFSNRCWE-LLGYDQHDDELNQGVDKVQAWRDRMHPEDGELFDRTLEKHIKGEGP- 239

Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAE 579
             +       K      +R   +    ++      S T  DI++ KQ + K+  AK++AE
Sbjct: 240 -FDVEYRIKGKNGNWRWIRGRGQLAFDAAGQPLRMSGTNMDITQLKQAEEKVVKAKELAE 298

Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639
           K +  KS+FL+ +SHE+RTPL AI+GF+++ +        NP   E    I+++G  +L+
Sbjct: 299 KANKAKSEFLSSMSHELRTPLNAILGFAQLFE---LDKNLNPAQRENIGEIEKAGKHLLE 355

Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS-FANNIPRIL 698
           ++ D+LD++KIE+GKM+   E ++    V E I L++  A + R+ I    F      + 
Sbjct: 356 LIGDVLDLAKIEAGKMDFELEQLNPMRLVDECIPLMRPLAVKNRVEINVHNFELGNASVR 415

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
           AD   +KQ+ +N++SNAI +    G++ I  + T    + + V+DTG G+   + +   +
Sbjct: 416 ADSVRLKQVFINLISNAIKYNRKDGRVDIVFSETEEGHLRVSVQDTGFGIPLKQQKYMFQ 475

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
           PF ++  +++   EG+G+GL + + +V+   G+    S   KG+   +  PLY  S 
Sbjct: 476 PFNRL-GAERGEIEGSGVGLVITRQLVEQMGGELGFSSDEGKGSKFWVQLPLYSESA 531



 Score = 42.3 bits (98), Expect = 0.30,   Method: Composition-based stats.
 Identities = 16/200 (8%), Positives = 43/200 (21%), Gaps = 13/200 (6%)

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
            G+      +    Y+  ++    +       S   G  +V                + +
Sbjct: 106 SGELVFRIRKKKGGYIWAEVRVDNVRDSQGRVSFMSG--VVFDVTKQKQTEQALLISEAR 163

Query: 204 FSHLHEIKKGHSSVEKEKY-----------DIFSQQSPPPHLRMKNKVSSLTEYYAHKDD 252
            + + +            +            +   Q      +  +KV +  +    +D 
Sbjct: 164 HARIIQSSNDGIWEWSADHGGFQFSNRCWELLGYDQHDDELNQGVDKVQAWRDRMHPEDG 223

Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
            L           E     +      N N    +       + + +           +  
Sbjct: 224 ELFDRTLEKHIKGEGPFDVEYRIKGKNGNWRWIRGRGQLAFDAAGQPLRMSGTNMDITQL 283

Query: 313 AYFDEGENLTPETVDKCPIP 332
              +E      E  +K    
Sbjct: 284 KQAEEKVVKAKELAEKANKA 303


>gi|332992814|gb|AEF02869.1| putative two-component member protein [Alteromonas sp. SN2]
          Length = 1109

 Score =  340 bits (872), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 100/513 (19%), Positives = 206/513 (40%), Gaps = 19/513 (3%)

Query: 311 LSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
           +S+   E E +     D        V S G +  ANP+   +T Y   + I   G +   
Sbjct: 261 VSSRAIESERIQRAITDIAVDAIITVDSTGIIKTANPAVTAVTGYSPEELIGQQGKILA- 319

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
                    +        +              +    +    +         +   N  
Sbjct: 320 ----PDDKKSIYSSDFFEQKSVPTEQIIGTSREVVIVGKGGEYIPVRVGIGYTKVDGNAL 375

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI--IN-REGIILSTNRAVSKLFG 486
             G   +    +  +  +     +  S +     GIA   +N  +  ++  + AVS++ G
Sbjct: 376 FVGFFSDLRKRKAMEDALRESEAKFRSFISNIP-GIAYRCLNEPDWPMVFISDAVSEITG 434

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
           +  +D +     +             +   ++     ++E   +    + + ++   +  
Sbjct: 435 HAADDFILPNPRITFGSLCHPDDLKRVETEVTDQNTFSIEYRIINKKGDVRWVTEHGVHV 494

Query: 547 KLPFSSCYS--LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
                +       + DI+  ++ + +L  AK+ AE+ ++ +++FLA +SHEIRTP+ AII
Sbjct: 495 LDEQGNTIYLDGFISDITARREMEEELKAAKERAEQAAAARTNFLANMSHEIRTPMNAII 554

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           GFS+++  ++  P        +   ++RS   +L ++ND+LD +K++ GK++L +    +
Sbjct: 555 GFSDLMLAEKMSP----EQHGHLTTVNRSARSLLHLLNDILDSAKLDKGKLDLDYRDFII 610

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG 723
            E V   IS   L A  KRI +     + +          ++Q+  N++ NA+ FT  G 
Sbjct: 611 REEVDTVISTFWLEAKSKRISLEVQVGSEVREAYNGVPERIRQVLNNLIGNAVKFTGDGS 670

Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
            +++  + + +  V  +V+D+G+GM + ++ +    F Q   S   +  GTGLG  ++K 
Sbjct: 671 -VVLEVS-SDSSFVYFKVKDSGIGMNSEQVNRVFDAFAQADASMSRKYGGTGLGTTISKQ 728

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           +V+   G     S    G+      PL     P
Sbjct: 729 LVELMGGNICAQSELGVGSTFTFRLPLVPAKAP 761



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/252 (13%), Positives = 84/252 (33%), Gaps = 20/252 (7%)

Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
           +  +     +V   + + G   L+ +  +    A        + R  +       +    
Sbjct: 170 ALWIKFGLSAVGIKKSSLGRDALIASIVMGLAIAGMHYTGMLAARFVMPPGMEFTSQPSE 229

Query: 407 RENSLAMTFIPFEKAN-QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465
               LA++              +       +     I   +++       +I +   D I
Sbjct: 230 ISIYLALSIAMVTVTLIALVLGITLLFKYKDVSSRAIESERIQ------RAITDIAVDAI 283

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
             ++  GII + N AV+ + GY  E+++ +   +    +  S+ +    E  S+   Q +
Sbjct: 284 ITVDSTGIIKTANPAVTAVTGYSPEELIGQQGKILAPDDKKSIYSSDFFEQKSVPTEQII 343

Query: 526 E--KITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEKE 581
              +  +   K  + + +R+ I          +     D+ + K  ++ L        +E
Sbjct: 344 GTSREVVIVGKGGEYIPVRVGIGYTKVDGNALFVGFFSDLRKRKAMEDAL--------RE 395

Query: 582 SSHKSD-FLARV 592
           S  K   F++ +
Sbjct: 396 SEAKFRSFISNI 407



 Score = 42.7 bits (99), Expect = 0.25,   Method: Composition-based stats.
 Identities = 37/395 (9%), Positives = 103/395 (26%), Gaps = 44/395 (11%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH---------IDPNNHIGDLLKR 139
           +D+ G +K  +  +    G    ++IG +   +               +  +   + +  
Sbjct: 286 VDSTGIIKTANPAVTAVTGYSPEELIGQQ-GKILAPDDKKSIYSSDFFEQKSVPTEQIIG 344

Query: 140 QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199
                 +  +    G  + V + +    +   N  F GF         R         + 
Sbjct: 345 T---SREVVIVGKGGEYIPVRVGIGYTKV-DGNALFVGF-----FSDLRKRKAMEDALRE 395

Query: 200 LDKKFSH----LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD--V 253
            + KF      +  I     +         S           +                 
Sbjct: 396 SEAKFRSFISNIPGIAYRCLNEPDWPMVFISDAVSEITGHAADDFILPNPRITFGSLCHP 455

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
              ++     +++++   +        +     ++   + +    +       +  +   
Sbjct: 456 DDLKRVETEVTDQNTFSIEYRIINKKGDVRWVTEHGVHVLDEQGNTIYLDGFISDITARR 515

Query: 314 YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
             +E      E  ++        +    F AN S  + T   +        G S L+ A 
Sbjct: 516 EMEEELKAAKERAEQ------AAAARTNFLANMSHEIRTPMNA------IIGFSDLMLAE 563

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
           K+S         + RS R+ +     +       +  L + +  F    +    +    +
Sbjct: 564 KMSPEQHGHLTTVNRSARSLLHLLNDILDSAKLDKGKLDLDYRDFIIREEVDTVISTFWL 623

Query: 434 EPEDVDTRINKR---KMEIEV----MQLCSILEAT 461
           E +     +  +   ++         ++  +L   
Sbjct: 624 EAKSKRISLEVQVGSEVREAYNGVPERIRQVLNNL 658


>gi|288555913|ref|YP_003427848.1| Hybrid signal transduction histidine kinase PAS/PAC [Bacillus
           pseudofirmus OF4]
 gi|288547073|gb|ADC50956.1| Hybrid signal transduction histidine kinase PAS/PAC [Bacillus
           pseudofirmus OF4]
          Length = 960

 Score =  340 bits (872), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 104/511 (20%), Positives = 212/511 (41%), Gaps = 34/511 (6%)

Query: 319 ENLTPETVDKCPIP-----FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
           E+L  E +             ++     FY +         + ++  +   GL       
Sbjct: 316 EDLFDELLTHLSDIYPVDKMLLFLTEETFYRSRGIYDKHVTQLLNHFDQGIGLILREKNN 375

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA---NQFPENMPQ 430
                  +  V    ++    A    +       E           K     +  E    
Sbjct: 376 YHLVEREVTDVERGLAEGVLTAYDLYIPIYSSGGELRAVFATNRVGKPFLQTEINELSGV 435

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490
                  ++  +   + E E      I++  ++ I  ++ EG +L  N++  +L     +
Sbjct: 436 MNHMSIAIEKVLMHEETEKERQLNQDIIDNVNEAIQFVDNEGHLLQFNQSFCQLIECEQK 495

Query: 491 DILRKPFTVFLEQNTP-----SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
             L+ PF+++ +           +  +  E L  D    L       TK++++  +    
Sbjct: 496 AQLKAPFSMWFQALEHVVGGNEAVASFYNEALKQDNSSVLSMNYEIHTKQKRIFKVYAEP 555

Query: 546 KKLPFSS-CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
               ++         DI++  + +                KS+ ++ VSHE+RTPL++I+
Sbjct: 556 VYHGYNKVGTIFVHRDITKQHEVE--------------QMKSELVSTVSHELRTPLSSIL 601

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           GF+E++ +++  P    +  +Y   I +  N + +++ND LD+ ++ESG      E + +
Sbjct: 602 GFTELMLHRKLKP---EKQEKYLKTIHKEANRLTNLINDFLDLQRMESGGQMYTNESLDI 658

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724
            + +SE ++  + Y+ +  +         I  I  D   ++Q+  NI+SNAI F+P+GG 
Sbjct: 659 RDLISEVLTRFEAYSEKHTLHFINLAEKTI--IQGDSERIQQVITNIISNAIKFSPNGGD 716

Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
           I  +T  +++  + + V+D G+G+   E++   + F +I NS + +  GTGLGLP+ K +
Sbjct: 717 IT-TTLASNSTSLFVSVKDDGLGIPENEMKNLFRKFYRIDNSDRKKIGGTGLGLPICKEI 775

Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
           V+A+ G   + S   +G+   I  PL D S 
Sbjct: 776 VEAHNGTISVESKENEGSTFIIELPLNDCSQ 806


>gi|196229798|ref|ZP_03128662.1| PAS/PAC sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
 gi|196226124|gb|EDY20630.1| PAS/PAC sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
          Length = 528

 Score =  340 bits (872), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 98/367 (26%), Positives = 181/367 (49%), Gaps = 12/367 (3%)

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
           L +I++++ D I   N   I+ S N++  ++FG+  E+++ +P +     +      H L
Sbjct: 20  LPAIIDSSEDAIVSKNLHSIVTSWNKSAERIFGFTAEEMIGQPISRLFPPDRMEEETHIL 79

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKN 569
           + I + +  +     T+   K+ K + + + I  +   +   +       DI+  K    
Sbjct: 80  SRITAGE--RVEHFETIRVRKDGKEIDVSLTISPVRDKTGKIVGASKIARDITGQKDAAR 137

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L+ A +  ++    K DFLA +SHE+RTPLTAI+G+ +++K +           +    
Sbjct: 138 RLAQAHEDLKRADRLKIDFLATLSHELRTPLTAILGWIQILKEEA----TPADLAQGLEV 193

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I+R+  L   ++ DLLD+S+IE+GK++L  + V L   V+ A+  V+  A+ K I + + 
Sbjct: 194 IERNVRLQSQLIEDLLDMSRIEAGKVSLDLQRVDLSAVVNAAVQTVRPTADAKDIRLTSL 253

Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749
            A+     + D   ++QI  N+L+NAI FTP+ G+I + T H +   V + V D G G+ 
Sbjct: 254 LADVDGVTMGDKNRLQQIVWNLLTNAIKFTPTHGRIQV-TMHRAKSNVEVIVSDNGQGIA 312

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIF 808
              L+     F Q   S   +  G G+GL +A+ + + + G   + S    KG    +  
Sbjct: 313 PEFLDHVFDRFRQADASTTRKHGGLGIGLSIARHLAELHGGHLKVSSLGLGKGASFTLSL 372

Query: 809 PLYDTSH 815
           P+    H
Sbjct: 373 PMLSAHH 379



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/250 (8%), Positives = 71/250 (28%), Gaps = 8/250 (3%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG-KTTLWPIE 153
           +   ++   +  G  A +MIG  +  +     ++   HI   +         +T     +
Sbjct: 40  VTSWNKSAERIFGFTAEEMIGQPISRLFPPDRMEEETHILSRITAGERVEHFETIRVRKD 99

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
           G  + V + ++  P+  +  +  G     I        D      +  +       +K  
Sbjct: 100 GKEIDVSLTIS--PVRDKTGKIVGASK--IARDITGQKDAARRLAQAHEDLKRADRLKID 155

Query: 214 HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE 273
             +    +              +K +    T     +   +      L +     L +  
Sbjct: 156 FLATLSHELRTPLTAILGWIQILKEEA---TPADLAQGLEVIERNVRLQSQLIEDLLDMS 212

Query: 274 DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF 333
                 ++   ++     + N + ++    +      L++   + + +T    ++     
Sbjct: 213 RIEAGKVSLDLQRVDLSAVVNAAVQTVRPTADAKDIRLTSLLADVDGVTMGDKNRLQQIV 272

Query: 334 FVYSHGNLFY 343
           +      + +
Sbjct: 273 WNLLTNAIKF 282


>gi|294851985|ref|ZP_06792658.1| two-component system protein [Brucella sp. NVSL 07-0026]
 gi|294820574|gb|EFG37573.1| two-component system protein [Brucella sp. NVSL 07-0026]
          Length = 798

 Score =  340 bits (872), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 123/543 (22%), Positives = 227/543 (41%), Gaps = 54/543 (9%)

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEI 362
                        + +      + +     + +       Y + S   +  Y++ D +  
Sbjct: 256 QAARAREADDLSRQIQRRIDMALARGRCGLWDWDMARGRIYWSRSMYEMLGYEAQDAVLP 315

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
            G ++ +++       +  +      +         R+  ++    + + M       + 
Sbjct: 316 FGDVAAIINEEDGDLYSIAEQA----AAGDISHVD-RVFRMRHADGSWVWMRVRAEIASE 370

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
                +   GI  +  +     ++     M++   +E  S+   + +    ++  N   S
Sbjct: 371 GD---LHLVGIAFDVSEQHRFAQQTAEADMRIREAIENISEAFVLWDANNRLVMANSKFS 427

Query: 483 KLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
           +  G PV  +    P         P      +    +    QT E+       + + L +
Sbjct: 428 EYAGLPVWMLKPGVPRNEVDAHTRPFTFERRMANEHNRAGGQTFERQL----SDGRWLQV 483

Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH---------------------------- 573
               ++            DI++ K  + +L                              
Sbjct: 484 N---ERRTQDGGMVSIGTDITQLKLHQERLVDSERRLMATVHDLSIARKGERDRVRELSE 540

Query: 574 -------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
                   K+ AE  +  KS+FLA +SHE+RTPL AIIGFSE+I+   FGPLG+ RY EY
Sbjct: 541 LARKYSLEKERAEAANRAKSEFLANMSHELRTPLNAIIGFSEMIQAGTFGPLGSDRYEEY 600

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
            N I  SGN +L+++ND+LD+SKIE+G  +L  E + L   ++E + ++ L A EK I +
Sbjct: 601 INDIHTSGNFLLNVINDILDMSKIEAGHFSLDREEIDLCPLINETVRIISLQAEEKNIAV 660

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
            T   + +  + AD R++KQ+ +N+LSNA+ FT  GG+I +    T    + + ++DTGV
Sbjct: 661 ETRIEDAM-ELYADRRAIKQVLINLLSNAVKFTSYGGRITVRARKT-GAALFMTIQDTGV 718

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+    L K  +PF Q+ N       G+GLGL +++++ + + G   I ST   GT++ +
Sbjct: 719 GIPKSALRKIGQPFEQVENQFTKTHTGSGLGLAISRSLAELHGGWLRIRSTERVGTVVSV 778

Query: 807 IFP 809
             P
Sbjct: 779 CIP 781



 Score = 40.8 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 30/254 (11%), Positives = 60/254 (23%), Gaps = 18/254 (7%)

Query: 86  TWNID-AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN--HIGDLLKRQNT 142
            W+ D A G +   S  + + +G  A   + +   DV+ I++ +  +   I +     + 
Sbjct: 285 LWDWDMARGRI-YWSRSMYEMLGYEAQDAV-LPFGDVAAIINEEDGDLYSIAEQAAAGDI 342

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
            +             +V + + A      +    G     I       +         D 
Sbjct: 343 SHVDRVFRMRHADGSWVWMRVRAEIASEGDLHLVG-----IAFDVSEQHRFAQQTAEADM 397

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
           +     E       +      +    S          V  L       +    T      
Sbjct: 398 RIREAIENISEAFVLWDANNRLVMANSKFSEY-AGLPVWMLKPGVPRNEVDAHTRP---F 453

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG---- 318
           T E     E          +      +  +     +    +S     +      E     
Sbjct: 454 TFERRMANEHNRAGGQTFERQLSDGRWLQVNERRTQDGGMVSIGTDITQLKLHQERLVDS 513

Query: 319 ENLTPETVDKCPIP 332
           E     TV    I 
Sbjct: 514 ERRLMATVHDLSIA 527


>gi|157692812|ref|YP_001487274.1| sensor histidine kinase [Bacillus pumilus SAFR-032]
 gi|157681570|gb|ABV62714.1| sensor histidine kinase [Bacillus pumilus SAFR-032]
          Length = 593

 Score =  340 bits (872), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 86/364 (23%), Positives = 151/364 (41%), Gaps = 24/364 (6%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            +  E   L +IL + +DG+  IN +G IL TN    +           +   +      
Sbjct: 247 ALNQEKEHLSNILSSMADGVITINIDGTILMTNPPAERFL---QAWYYEQNMKIKDGDEL 303

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
           P          +S +  Q +E    G T     + L   +            + D++E +
Sbjct: 304 PPEARELFHTAVSTEKEQMIEVTLQGRT----WVLLMSPLYNQQDVRGAVAVLRDMTEER 359

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           +                  + DF+A VSHE+RTP+  + G+SE I +   G        E
Sbjct: 360 RL--------------DKLRKDFIANVSHELRTPIAMLQGYSEAIIDDIAG--SEEEKKE 403

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
            A  I      +  +VNDLLD++++E+G + L+ E    +E   +        A EK++ 
Sbjct: 404 IAQIIYDESLRMGRLVNDLLDLARMEAGHITLNLESTDTEELTEKIYRKFLGIAKEKQVD 463

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +      + P  + D   ++Q+  N++ NAI  TP GG++  S     +  + + V+D+G
Sbjct: 464 LTYDIQVDEPHFVLDPDKMEQVFTNLIDNAIRHTPEGGEVHFSVQSVESG-LKMDVKDSG 522

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
            G+   +L    + F +   ++     GTGLGL + K +V+A+ G  +  S    GT   
Sbjct: 523 SGIPEEDLPFIFERFYKADKARTRGRSGTGLGLAIVKNIVEAHQGSIHAHSKAGTGTHFT 582

Query: 806 IIFP 809
              P
Sbjct: 583 FYIP 586


>gi|323698341|ref|ZP_08110253.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. ND132]
 gi|323458273|gb|EGB14138.1| multi-sensor hybrid histidine kinase [Desulfovibrio desulfuricans
           ND132]
          Length = 1141

 Score =  340 bits (872), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 105/425 (24%), Positives = 180/425 (42%), Gaps = 56/425 (13%)

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
             R+ + ++     +   + E + +GI +I+    I   NR  + + GY  E+++ K   
Sbjct: 215 QVRLRETELRESEEKYRRLFETSIEGIVMIDVTEHIFEVNRIFADMLGYSEEELVGKFVP 274

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----Y 554
             +           +    +    Q        + K+   +   I       +       
Sbjct: 275 DLIHGEDQKNHEKEIALRRAGHASQ---YERRLARKDGSEVWTMISASPQFDARGEFNGV 331

Query: 555 SLTMHDISE---------------------------------------WKQEKNKLSHAK 575
              + DI+                                         KQ + ++  AK
Sbjct: 332 FAMITDITPLRIAQANLKTAYDELEKRVVERTDELNKTNRLLTSEIHIRKQTEKEIIKAK 391

Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
           + AEK +  KS+FLA +SHEIRTP+ AIIG + +IK             +Y N ID S  
Sbjct: 392 EAAEKATLAKSEFLANMSHEIRTPMNAIIGMTHLIKMTELSAT----QRDYLNKIDISAK 447

Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695
            +L I+ND+LD+SKIE+G + +      L++ + +  ++V   ANEK++    S   ++P
Sbjct: 448 SLLGIINDVLDLSKIEAGMLTVESVGFKLEQVLEQLTTIVSPRANEKKLEFLISVGKDVP 507

Query: 696 R-ILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNE--EVILRVRDTGVGMTNY 751
             I  D   + QI +N+ +NA+ FT  G  ++ IST     +   +   V+D G+G+   
Sbjct: 508 PAIQGDPMRMAQILINLCNNAVKFTDEGSVVVGISTLEKDADKARLRFTVKDDGIGIKPG 567

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE--IIFP 809
           ++++  +PF Q   S   +  GTGLGL L K +VD   G+    S   KG+L    + FP
Sbjct: 568 KIQELFQPFTQADASTTRKYGGTGLGLSLCKQLVDLMGGEIGAESEFGKGSLFWFEVTFP 627

Query: 810 LYDTS 814
           +Y   
Sbjct: 628 IYRDE 632



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 41/112 (36%), Gaps = 4/112 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID   ++ E++      +G    +++G  + D+        +     L +  +    +  
Sbjct: 244 IDVTEHIFEVNRIFADMLGYSEEELVGKFVPDLIHGEDQKNHEKEIALRRAGHASQYERR 303

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
           L   +G+   V   ++A P +    EF+G   F ++         +A  K  
Sbjct: 304 LARKDGS--EVWTMISASPQFDARGEFNGV--FAMITDITPLRIAQANLKTA 351



 Score = 48.5 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/145 (11%), Positives = 39/145 (26%), Gaps = 9/145 (6%)

Query: 312 SAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
                E E       +        +    ++F  N  F  +  Y S +++        + 
Sbjct: 220 ETELRESEEKYRRLFETSIEGIVMIDVTEHIFEVNRIFADMLGY-SEEELVGKFVPDLI- 277

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
                   N  K + L R+      AS     +     + +        + +   E    
Sbjct: 278 --HGEDQKNHEKEIALRRA----GHASQYERRLARKDGSEVWTMISASPQFDARGEFNGV 331

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLC 455
             +  +    RI +  ++    +L 
Sbjct: 332 FAMITDITPLRIAQANLKTAYDELE 356


>gi|171060213|ref|YP_001792562.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
 gi|170777658|gb|ACB35797.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
          Length = 1603

 Score =  340 bits (872), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 113/763 (14%), Positives = 233/763 (30%), Gaps = 56/763 (7%)

Query: 86   TWNIDAHGYLKEISEELPKTIGNYAFKM----IGMRLCDVSDILHIDPNNHIGDLLKRQN 141
            TW  +        +E      G    ++    IG     ++    +  +  + +      
Sbjct: 349  TWEWNVETGETIFNERWAGIAGYTLDELAPTHIG-TWSALTHPDDLRRSAVLLEHHFNGA 407

Query: 142  TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
                +  +        +V +      +  R+         G            A  +   
Sbjct: 408  LPAYECEVRMRHRDGHWVWVLDRGK-LSGRSESGRPLWMAGTHMDISERKHAEAALRASQ 466

Query: 202  KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA-----HKDDVLKT 256
                    I                       +         T          +   L  
Sbjct: 467  DLLDRTGRIGGVGGWSYDLGTQEILWTDQTCRIHGVEPGHRPTLTEVMSYFDPESRPLLE 526

Query: 257  EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT---LQNNSKESFEYLSHRNHPSLSA 313
            +      +       +  F T        +    T        +             L +
Sbjct: 527  QAVQRSIATGEGYDMELPFTTAGGQHIWVRAVGETEFVGDQAVRMLGTLQEVTARRELES 586

Query: 314  YFDEGENLTPETVDKCPIPFFVYSHGNLFYA-NPSFLLLTKYKSVDDIEIAGGLSTLL-- 370
                   +    ++  P    V+    L  A N  F  L                 ++  
Sbjct: 587  ELRRNNEVLASVLENLPCGLSVFDADGLLVAANAQFRSLLDLPDRLFEGPVTRFEDIIRH 646

Query: 371  -DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
                     + I+  +    DR                  SL +   P            
Sbjct: 647  NAEHGEYGPDDIEAKIRTIVDRARSPVVQHQFERVRPDGTSLEIRGGPLP-------AGG 699

Query: 430  QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF---- 485
                  +    R  + +++     L   ++   +   + + +  ++  N    +++    
Sbjct: 700  FVTTYTDISARRKAEAEVQRSAQLLRGAIDTIDEAFVLYDPDDRLVFCNDKYRRIYAASA 759

Query: 486  -----GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
                 G   E+I+RK        +    ++ ++ E ++           + +  + + L 
Sbjct: 760  DLIVPGTTFEEIVRKGAERGQYVDAIGRVDDWVAERMAAHRAG--NAPLVQALDDGRTLR 817

Query: 541  LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
            +   +++            DI+E          A++ AE  S  KS+FLA +SHEIRTP+
Sbjct: 818  I---VERRMPDGHTVGFRIDITE-------FQRAREAAEAASRAKSEFLANMSHEIRTPM 867

Query: 601  TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
             AI+G   ++      P    R  +Y    + +   +L ++ND+LD SK E+ +M L   
Sbjct: 868  NAILGMLALLHKTELAP----RQADYVAKTEGAARSLLRLLNDILDFSKAEAERMVLEAR 923

Query: 661  PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFT 719
            P  +D+ + +   ++      K + +       +PR ++ D   ++Q+ +N+  NAI FT
Sbjct: 924  PFRIDQLLRDLSVILSANIGGKEVEVLFDIDPTLPRALVGDAMRLQQVLINLGGNAIKFT 983

Query: 720  PSGGQIIISTTHTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
              G ++++S            + + VRDTG+G+      +    F Q   S   R  GTG
Sbjct: 984  AEG-EVVVSVAVRERSALGVTLQIAVRDTGIGIAAENQARIFSAFTQAEASTTRRFGGTG 1042

Query: 776  LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
            LG+ +++ +V    G+  + S P +G+       L     P D
Sbjct: 1043 LGVAISQRLVALMGGELQVASEPGRGSRFHFCITLPVAPEPAD 1085



 Score =  116 bits (290), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 33/510 (6%), Positives = 129/510 (25%), Gaps = 31/510 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTWYGK 146
            D    +  +++   +  G    + +G     +       P   + +            +
Sbjct: 93  TDRALRITWVNDAFTQVYGYSPEQALGATPGRLLGHPDSSPAAIDTLLRSAAAGVGCRVE 152

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                 +G +++V  ++   P++    +  GF    I                  ++ + 
Sbjct: 153 ILNRAADGHDVWVDTEV--QPVHDDAGQVIGF--VEIATDISASKLAVQEIADQRRRLAA 208

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPP---HLRMKNKVSSLTEY----------YAHKDDV 253
           + +  +  +             +         +    + L  +           A  +  
Sbjct: 209 IIDGTQAGTWEHDLAKSENRVNAAYAQMLGYTLPEYTALLRAHSFPSLVHPDDLARVEQA 268

Query: 254 LKTEKYPLLTSEESSLPEQE-DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
            ++      +  E+    +    H + +    +             +  +L         
Sbjct: 269 RESHLTGRSSEYEAEFRMRHKAGHWVWIQSRGRVTGHDAHGRPLVIAGIHLDISARKHAE 328

Query: 313 AYFDEGENLTPETVDKCPIPFFVY--SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
                G+      +    +  + +    G   + N  +  +  Y   +      G  + L
Sbjct: 329 LELTRGQQRLANILAGTDVGTWEWNVETGETIF-NERWAGIAGYTLDELAPTHIGTWSAL 387

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
             P   D      ++ +  +    A    +     +      +        ++    +  
Sbjct: 388 THPD--DLRRSAVLLEHHFNGALPAYECEVRMRHRDGHWVWVLDRGKLSGRSESGRPLWM 445

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-PV 489
            G   +  + +  +  +      L         G    +     +       ++ G  P 
Sbjct: 446 AGTHMDISERKHAEAALRASQDLLDRTGRIGGVGGWSYDLGTQEILWTDQTCRIHGVEPG 505

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI---IIK 546
                     + +  +  ++   +   ++    +  +     +T   + + +R       
Sbjct: 506 HRPTLTEVMSYFDPESRPLLEQAVQRSIATG--EGYDMELPFTTAGGQHIWVRAVGETEF 563

Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSHAKK 576
               +     T+ +++  ++ +++L    +
Sbjct: 564 VGDQAVRMLGTLQEVTARRELESELRRNNE 593



 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 41/522 (7%), Positives = 120/522 (22%), Gaps = 37/522 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFK----MIGMRLCDVSDILHIDPNNHIGDLLKRQN 141
           TW  D       ++    + +G    +    +       +     +       +      
Sbjct: 217 TWEHDLAKSENRVNAAYAQMLGYTLPEYTALLRAHSFPSLVHPDDLARVEQARESHLTGR 276

Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPI-YSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
           +   +           +V I        +  +       G   + ++   +    L +  
Sbjct: 277 SSEYEAEFRMRHKAGHWVWIQSRGRVTGHDAHGRPLVIAGIH-LDISARKHAELELTRGQ 335

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT-------EYYAHKDDV 253
            +  + L     G      E  +    +             + T         +      
Sbjct: 336 QRLANILAGTDVGTWEWNVETGETIFNERWAGIAGYTLDELAPTHIGTWSALTHPDDLRR 395

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS-----HRNH 308
                         +   +      + +             +      +++         
Sbjct: 396 SAVLLEHHFNGALPAYECEVRMRHRDGHWVWVLDRGKLSGRSESGRPLWMAGTHMDISER 455

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLS 367
               A     ++L   T     +  + Y  G            +   +            
Sbjct: 456 KHAEAALRASQDLLDRTGRIGGVGGWSYDLGTQEILWTDQTCRIHGVEPG---HRPTLTE 512

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
            +      S     + V    +                     + +  +   +     + 
Sbjct: 513 VMSYFDPESRPLLEQAVQRSIATGEGYDMEL---PFTTAGGQHIWVRAVGETEFVGD-QA 568

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
           +   G   E    R  + ++      L S+LE    G+++ + +G++++ N     L   
Sbjct: 569 VRMLGTLQEVTARRELESELRRNNEVLASVLENLPCGLSVFDADGLLVAANAQFRSLLDL 628

Query: 488 PVEDILR--KPFTVFLEQNT------PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
           P          F   +  N       P  +   +  I+       ++        +   L
Sbjct: 629 PDRLFEGPVTRFEDIIRHNAEHGEYGPDDIEAKIRTIVDRARSPVVQHQFERVRPDGTSL 688

Query: 540 SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE 581
            +R        +  +  T  DIS  ++ + ++  + ++    
Sbjct: 689 EIRGGPLP---AGGFVTTYTDISARRKAEAEVQRSAQLLRGA 727



 Score =  104 bits (259), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 40/409 (9%), Positives = 103/409 (25%), Gaps = 22/409 (5%)

Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA 248
            ++   AL  R       + +     + V      ++             ++    +   
Sbjct: 74  AEHGLLALVARRTSNAVIITDRALRITWVNDAFTQVYGYSPEQALGATPGRLLGHPDSSP 133

Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
              D L       +      L         + +          + +++ +   ++     
Sbjct: 134 AAIDTLLRSAAAGVGCRVEILN-----RAADGHDVWVDTEVQPVHDDAGQVIGFVEIATD 188

Query: 309 PSLSAYFDEG----ENLTPETVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSVD--DIE 361
            S S    +            +D      + +         N ++  +  Y   +   + 
Sbjct: 189 ISASKLAVQEIADQRRRLAAIIDGTQAGTWEHDLAKSENRVNAAYAQMLGYTLPEYTALL 248

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
            A    +L+    L+     +   L           A               +       
Sbjct: 249 RAHSFPSLVHPDDLARVEQARESHLT---GRSSEYEAEFRMRHKAGHWVWIQSRGRVTGH 305

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
           +     +   GI  +    +  + ++     +L +IL  T  G    N E      N   
Sbjct: 306 DAHGRPLVIAGIHLDISARKHAELELTRGQQRLANILAGTDVGTWEWNVETGETIFNERW 365

Query: 482 SKLFGYPVEDILRKPFTVF--LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
           + + GY ++++       +  L        +  L E          E       ++   +
Sbjct: 366 AGIAGYTLDELAPTHIGTWSALTHPDDLRRSAVLLEHHFNGALPAYECEVRMRHRDGHWV 425

Query: 540 SLRII---IKKLPFSSCY--SLTMHDISEWKQEKNKLSHAKKIAEKESS 583
            +        +         + T  DISE K  +  L  ++ + ++   
Sbjct: 426 WVLDRGKLSGRSESGRPLWMAGTHMDISERKHAEAALRASQDLLDRTGR 474



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 23/184 (12%), Positives = 56/184 (30%), Gaps = 10/184 (5%)

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ---LCSILEAT 461
                  A        A      +    +       R  + +M+  + +   L  +   T
Sbjct: 27  RPEAPQHAWAPWLASAAGLLGNAVLAVWLWRRVRRCRQVESQMQQWLAEHGLLALVARRT 86

Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL-EQNTPSVMNHYLTEILSLD 520
           S+ + I +R   I   N A ++++GY  E  L       L   ++       L    +  
Sbjct: 87  SNAVIITDRALRITWVNDAFTQVYGYSPEQALGATPGRLLGHPDSSPAAIDTLLRSAAAG 146

Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKK 576
           +   +    L    +   + +   ++ +   +     +     DIS  K    +++  ++
Sbjct: 147 VGCRV--EILNRAADGHDVWVDTEVQPVHDDAGQVIGFVEIATDISASKLAVQEIADQRR 204

Query: 577 IAEK 580
               
Sbjct: 205 RLAA 208


>gi|320353798|ref|YP_004195137.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
           2032]
 gi|320122300|gb|ADW17846.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
           2032]
          Length = 1073

 Score =  340 bits (872), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 115/750 (15%), Positives = 233/750 (31%), Gaps = 63/750 (8%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
             + DAH  +  ++       G    + I   L +V  ++              +    G
Sbjct: 213 VLSTDAHNRVLFMNPVAEALTGWTLAEAINKPLTEVVRMVDGQGGPV------PREGSAG 266

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +  L   +G      I      I   + + +G     +      ++  R   +R +  F 
Sbjct: 267 RAVLRCRDGAQY--TITQHTAAIRDGHHDRAGT--VLVFRDIGEEDRARQRLQRSELLFR 322

Query: 206 HLHEIKKGH-SSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEKYPLL 262
           +L E        ++ +  DI              K  +  +     +   +   ++    
Sbjct: 323 NLFEHHAAVKLIIDPDTGDIIEANQAAELFYGWPKELLIQMNIAQINTLPLEDIQREINK 382

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH--RNHPSLSAYFDEGEN 320
                           + +      +   ++   +     + H   +           EN
Sbjct: 383 AKHARRKYFAFRHRLADGSVRDVDVFNSNIEVAGRTLLHSIVHDVTSQKMAQEALQAKEN 442

Query: 321 LTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
                    P+   V         N     +T Y   +      G    L  P   +   
Sbjct: 443 YLRSIFRAAPVGIGVVRQRVFVTVNDHLCAMTGYTQAEL----TGQDARLLYPDEHEYLR 498

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
           +         +     +     ++ + +    +            E +    +  +  +T
Sbjct: 499 VGVGKYRMIAQRGT-GTMETQWVRKDGQCIDVLLGSTPFNPGDLGEGVTFTAL--DITET 555

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +     +E    +L   ++   +   + + +G +   N A  +L G+ +EDI+ +   V 
Sbjct: 556 KQKAADLE----RLRVAIDQAGEIFIVTDPQGTVQYANPAFEQLTGHTLEDIVGQNPRVL 611

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSL 556
                 +     L   +S     T     +   K+  L +    I  +         Y  
Sbjct: 612 KSGQHDAAFYQDLWATISKGK--TWNGRLVNKRKDGSLYTEEATISPVFAPGGEIINYVA 669

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
              DI+   + + +   A+K+              V+H+    L+ IIG++E+   Q   
Sbjct: 670 VKRDITAHLKLEQQFLQAQKM-----ESVGRLTGGVAHDFNNILSVIIGYTEMALEQ--- 721

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
              + +       I  + +   DIV  LL  S+    +  +  + ++L+  V   +++++
Sbjct: 722 TEPSQKIHHNLRKILEAASRSADIVRQLLAFSR----QQIIAPKVLNLNSTVEGMLNMLR 777

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST------- 729
                ++I +    A  +P I  D   V QI  N+  NA       G I+I+T       
Sbjct: 778 PML-GEQIELIWRPAQGVPAITMDPVQVDQIVANLCINARDAIDGTGTIVIATQDVVVDE 836

Query: 730 -------THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
                         V L V DTG G+    ++K  +PF          G GTGLGL    
Sbjct: 837 GNRAENDECAPGAYVRLSVSDTGCGIEKPLIDKIFEPFFTTKG----VGHGTGLGLSTVY 892

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
            +V  N G   + STP +GT  +I  P + 
Sbjct: 893 GIVKQNRGTIQVHSTPGQGTRFDIHLPAHH 922



 Score = 68.1 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 15/134 (11%), Positives = 39/134 (29%), Gaps = 13/134 (9%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           ++      L +IL +  + +   +    +L  N     L G+ + + + KP T  +    
Sbjct: 194 EVRQTKEHLHTILHSLGEAVLSTDAHNRVLFMNPVAEALTGWTLAEAINKPLTEVVRMVD 253

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDI 561
                                   +   ++    ++      +           L   DI
Sbjct: 254 GQGGPVPREGSAGRA---------VLRCRDGAQYTITQHTAAIRDGHHDRAGTVLVFRDI 304

Query: 562 SEWKQEKNKLSHAK 575
            E  + + +L  ++
Sbjct: 305 GEEDRARQRLQRSE 318


>gi|329851158|ref|ZP_08265915.1| sensory box protein [Asticcacaulis biprosthecum C19]
 gi|328840004|gb|EGF89576.1| sensory box protein [Asticcacaulis biprosthecum C19]
          Length = 1409

 Score =  340 bits (871), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 103/641 (16%), Positives = 203/641 (31%), Gaps = 39/641 (6%)

Query: 184  VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVE--------KEKYDIFSQQSPPPHLR 235
            +    ++   R   +   +  + L  +  G  +V+                  +    + 
Sbjct: 784  LRAADLELARRNSEQEALRTAAVLDTVLDGVLTVDIEGMITSINPAGVEIFGYAAEDIVG 843

Query: 236  MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ-- 293
                +  +        +    +         S L  +      N   +        ++  
Sbjct: 844  QPASLLMIEPQRLFT-ERYSAQPDNRGRFATSILGLETLARRQNGELFPIDLSVSAMRLS 902

Query: 294  NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLT 352
              +                             ++  P    ++  G     A+  +L   
Sbjct: 903  GKAVFVTTVRDITERKRQEIALSVTVEQLKLLIENTPAAVAMFDKGLRCIMASHRWLQDY 962

Query: 353  KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
                 + I    G       P++ +      +             +R  + Q        
Sbjct: 963  NLVGTEII----GRHHYDIFPEIRNMPHWVDIHRRALCGEV--FDSREESWQRVDGEREW 1016

Query: 413  MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG 472
            + +          +              +  +  +        S +E  S G+A+++ EG
Sbjct: 1017 LNWAIHPWTGPDGDTGGIVMFTEVITPRKQAEIALMTSEETFRSAMENASIGMALVSPEG 1076

Query: 473  IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
              L  N A+  L GY   + L          +           +L  ++           
Sbjct: 1077 RWLKVNTALCALLGYAELEFLASDVQSLTHADDLEGDRAQADRLLGDEIES-YTLEKRYF 1135

Query: 533  TKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
             +   ++     +  +  S      +   + DI++ ++ +                +S+F
Sbjct: 1136 HRNGHVIWGLQSVSLVRKSDGQPDYFIAQIQDITQRREME--------------HIQSEF 1181

Query: 589  LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
            ++  SHE+RTPLTAI G    +                 +   R+   +L +VND+LDI 
Sbjct: 1182 VSVASHELRTPLTAIHGSL-GMLAGPMASQLPETAGRMVDLAHRNSERLLGLVNDILDID 1240

Query: 649  KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIA 708
            K+ SG+M    +  SL E V++++   Q +A+   + +  S  +   R   D     Q+ 
Sbjct: 1241 KLTSGQMRFDMQVESLAELVAQSVEANQPFADRYGVSMHLSPVDAGLRARLDGDRFAQVM 1300

Query: 709  LNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
             N+LSNA  F+   G+I I      + +V + V D GVG+      K  + F Q  +S  
Sbjct: 1301 ANLLSNAAKFSHREGRIDIDVQIE-SGQVRITVTDHGVGIPEAFRGKIFERFSQADSSMT 1359

Query: 769  IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
                GTGLGL +A+ MV+   G+    S   +GT   I  P
Sbjct: 1360 RNKGGTGLGLYIARQMVERMGGQLGFDSVEGEGTSFWIKLP 1400



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 47/401 (11%), Positives = 112/401 (27%), Gaps = 22/401 (5%)

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY 246
             + +  R     L  + +   E         K      +         +   +  +   
Sbjct: 546 VTLRDKERDYTLGLVDRDAARLETMLNGRIQSKVAALSQTAHRWQAAGEVTQALWQVETR 605

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ----NNSKESFEY 302
               +           +  ++   E +      +   +        Q    ++ K  F  
Sbjct: 606 GYKDEGAGIVTLVWFDSDGKAKWIEPDVPAVAAVLPRSGPTVVDVSQPYALSDGKLGFSV 665

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEI 362
                    +     G        D          +     A     +++  +S      
Sbjct: 666 AFPVEDRRRTTGHVSGVFSVQALFDNLFGGDTGDDYRVTLKATAGDFVISAPQSRLAGNA 725

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
              +  +       +           + R+ +                + +         
Sbjct: 726 WVVVRQMRVLDHAWELRLEPTAAFVAAQRSPLPV--------------IVLFAGLTIAIL 771

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
                           D  + +R  E E ++  ++L+   DG+  ++ EG+I S N A  
Sbjct: 772 AALSVNALMLARLRAADLELARRNSEQEALRTAAVLDTVLDGVLTVDIEGMITSINPAGV 831

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL--RQTLEKITLGSTKEEKLLS 540
           ++FGY  EDI+ +P ++ + +        Y  +  +        L   TL   +  +L  
Sbjct: 832 EIFGYAAEDIVGQPASLLMIEPQRLFTERYSAQPDNRGRFATSILGLETLARRQNGELFP 891

Query: 541 --LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579
             L +   +L   + +  T+ DI+E K+++  LS   +  +
Sbjct: 892 IDLSVSAMRLSGKAVFVTTVRDITERKRQEIALSVTVEQLK 932



 Score = 78.1 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 27/374 (7%), Positives = 74/374 (19%), Gaps = 27/374 (7%)

Query: 86   TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
               +D  G +  I+    +  G  A  ++G     +                  +  +  
Sbjct: 814  VLTVDIEGMITSINPAGVEIFGYAAEDIVGQPASLLMIEPQRLFTERYSAQPDNRGRFAT 873

Query: 146  -----KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
                 +T      G    + + ++A+ +  +            V                
Sbjct: 874  SILGLETLARRQNGELFPIDLSVSAMRLSGK------AVFVTTVRDITERKRQEIALSVT 927

Query: 201  DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH--LRMKNKVSSLTEYYAHKDDVLKTEK 258
             ++   L E      ++  +                 +  ++     Y    +       
Sbjct: 928  VEQLKLLIENTPAAVAMFDKGLRCIMASHRWLQDYNLVGTEIIGRHHYDIFPEIRNMPHW 987

Query: 259  Y---PLLTSEESSLPEQEDFHTINLNQYTKKQYF----GTLQNNSKESFEYLSHRNHPSL 311
                      E     +E +  ++  +           G   +                 
Sbjct: 988  VDIHRRALCGEVFDSREESWQRVDGEREWLNWAIHPWTGPDGDTGGIVMFTEVITPRKQA 1047

Query: 312  SAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
                   E      ++   I    V   G     N +   L  Y  ++ +         L
Sbjct: 1048 EIALMTSEETFRSAMENASIGMALVSPEGRWLKVNTALCALLGYAELEFLASDV---QSL 1104

Query: 371  DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
                  + +  +   L   +        R         + +              +    
Sbjct: 1105 THADDLEGDRAQADRLLGDEIESYTLEKRYF---HRNGHVIWGLQSVSLVRKSDGQPDYF 1161

Query: 431  NGIEPEDVDTRINK 444
                 +    R  +
Sbjct: 1162 IAQIQDITQRREME 1175



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/324 (8%), Positives = 70/324 (21%), Gaps = 16/324 (4%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG--K 146
            +   G   +++  L   +G    + +   +  ++    ++ +    D L          +
Sbjct: 1072 VSPEGRWLKVNTALCALLGYAELEFLASDVQSLTHADDLEGDRAQADRLLGDEIESYTLE 1131

Query: 147  TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS- 205
               +   G    +    +   +   + +   F     +       +   +        S 
Sbjct: 1132 KRYFHRNGH--VIWGLQSVSLVRKSDGQPDYF--IAQIQDITQRREMEHIQSEFVSVASH 1187

Query: 206  HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
             L                  + Q P    RM +   +          V        LTS 
Sbjct: 1188 ELRTPLTAIHGSLGMLAGPMASQLPETAGRMVD--LAHRNSERLLGLVNDILDIDKLTSG 1245

Query: 266  ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
            +     Q +     + Q    +      +    S                D    +    
Sbjct: 1246 QMRFDMQVESLAELVAQSV--EANQPFADRYGVSMHLSPVDAGLRARLDGDRFAQVMANL 1303

Query: 326  VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
            +       F +  G +        + +    +   +   G+            +     M
Sbjct: 1304 LSNA--AKFSHREGRIDIDVQ---IESGQVRITVTDHGVGIPEAFRGKIFERFSQADSSM 1358

Query: 386  LYRSDRTCIAASARLHTIQWNREN 409
                  T +        ++     
Sbjct: 1359 TRNKGGTGLGLYIARQMVERMGGQ 1382


>gi|298251303|ref|ZP_06975106.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297545895|gb|EFH79763.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 744

 Score =  340 bits (871), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 109/748 (14%), Positives = 232/748 (31%), Gaps = 55/748 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D    +   +       G      +G  +    +   +          +   T      
Sbjct: 32  VDQENTIFYANATAEAMAGATRGAFLGKNIWQCPNTPRVINAPLYNTFFQATQTHT--PL 89

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                    +    +   P          F      H   +    +    + ++    + 
Sbjct: 90  QVEYVSPLTHTWRHVHIAPT--AEGAMVHF------HETTLYTMLQDALFQSEQLRQAIA 141

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           +      ++      +      P           + +  A       +        +  +
Sbjct: 142 DGVPAGIAILTADGIVLEINKVPLENAQVQLEDVVGKPLADAPWWASSSAMQQRLHDAVA 201

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS----AYFDEGENLTPE 324
              + +    +   Y KK     L+              +   +          E     
Sbjct: 202 QAGKGEVVRFDARVYPKKVGERELEVTITPHLNANQEVTYLLYTGFDVTERKRAEAELRF 261

Query: 325 TVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
             +  P   +V     L  Y N  +   T                    P+      ++ 
Sbjct: 262 LAETIPQFVWVARADGLSEYHNQRWYDYTNTTPEQ---GFSDRWVQFVHPE-DRQRVLEA 317

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
                   T   A  R    +                 ++    +   G   +  D +  
Sbjct: 318 WYTSVQTGTPYEAEFRFRNGRT--GEYRWFLARAMPFKDEQGNIVRWFGTFTDIHDKKQT 375

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV--FL 501
           + ++ +   +   +L++   G+A+ +  G I   N A +++ GY  E++           
Sbjct: 376 ETRLRLSEARYQRLLDSNIIGLALGDIYGHIYEANEAFARMIGYTQEEVRAGLIRWDTIT 435

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-YSLTMHD 560
                 +    L E+  L +    EK      K+   + + +   +L  +       + D
Sbjct: 436 PPEYRYLDEKALKELQELGVCHPFEKE--YQRKDGSRVPVIVGAARLAEADGKIISFIVD 493

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           ISE K+ +                K +F++  SHE++TPLTA+      +  ++      
Sbjct: 494 ISERKELE--------------KRKDEFVSLASHELKTPLTALKMLLYQL-RKKSKQEEY 538

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
                  + ++     +  ++NDLLD+SKI+ G+ +   EP+ LD  + E +  +Q    
Sbjct: 539 QDVTRILSRMEAQVTTLTQLINDLLDVSKIQMGRFDYADEPIDLDTVIQEVVETLQQTTT 598

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
            + + +  +       I+AD R + Q+  NI+SNAI ++P    + I  + + N   ++R
Sbjct: 599 TQTLRLHGAVHQC---IVADKRRLAQVFTNIISNAIKYSPQADSVDIWVSASQN-TAVIR 654

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
           V+D GVG+         + F +       +   G G+GL +AK +V    G   + S   
Sbjct: 655 VQDYGVGIPEELQSTVFERFNRGSYGASEKVFPGLGMGLYIAKEIVKHYGGTITVESAEG 714

Query: 800 KGTLIEIIFP---------LYDTSHPHD 818
           +GT   +  P         +  T+ PH+
Sbjct: 715 RGTTFTVSLPGVDGRACGTVSVTAPPHE 742



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 36/276 (13%), Positives = 80/276 (28%), Gaps = 22/276 (7%)

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIA 363
             +H  +       ++     +D  P     V     +FYAN +   +        +   
Sbjct: 1   MASHKHIEDVSPSLDDRVIHILDLLPDALLMVDQENTIFYANATAEAMAGATRGAFLGKN 60

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
                       +      P+       T      ++  +         +   P  +   
Sbjct: 61  IW------QCPNTPRVINAPLYNTFFQATQTHTPLQVEYVSPLTHTWRHVHIAPTAEGA- 113

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLC-SILEATSDGIAIINREGIILSTNRAVS 482
                    +   +       +    +  QL  +I +    GIAI+  +GI+L  N+   
Sbjct: 114 --------MVHFHETTLYTMLQDALFQSEQLRQAIADGVPAGIAILTADGIVLEINKVPL 165

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT-EILSLDLRQTLEKITLGSTKEEKLLSL 541
           +     +ED++ KP        + S M   L   +      + +        K+     L
Sbjct: 166 ENAQVQLEDVVGKPLADAPWWASSSAMQQRLHDAVAQAGKGEVVRFDARVYPKKVGEREL 225

Query: 542 RIIIKKLPFSSCYSLTMH----DISEWKQEKNKLSH 573
            + I     ++     +     D++E K+ + +L  
Sbjct: 226 EVTITPHLNANQEVTYLLYTGFDVTERKRAEAELRF 261



 Score = 65.0 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 27/269 (10%), Positives = 61/269 (22%), Gaps = 10/269 (3%)

Query: 65  TNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI 124
           T    +E    F       +F W   A G  +  ++           +    R       
Sbjct: 250 TERKRAEAELRFLAETIP-QFVWVARADGLSEYHNQRWYDYTNTTPEQGFSDRWVQFVHP 308

Query: 125 LHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIV 184
                         +  T Y     +    T  Y      A+P           R FG  
Sbjct: 309 EDRQRVLEAWYTSVQTGTPYEAEFRFRNGRTGEYRWFLARAMPFKDEQGNIV--RWFGTF 366

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP------PHLRMKN 238
                        +  + ++  L +      ++      I+                ++ 
Sbjct: 367 TDIHDKKQTETRLRLSEARYQRLLDSNIIGLALGDIYGHIYEANEAFARMIGYTQEEVRA 426

Query: 239 KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE 298
            +         +   L  +    L       P ++++   + ++         L     +
Sbjct: 427 GLIRWDTITPPEYRYLDEKALKELQELGVCHPFEKEYQRKDGSRVPVIVGAARLAEADGK 486

Query: 299 SFEY-LSHRNHPSLSAYFDEGENLTPETV 326
              + +       L    DE  +L    +
Sbjct: 487 IISFIVDISERKELEKRKDEFVSLASHEL 515



 Score = 45.8 bits (107), Expect = 0.032,   Method: Composition-based stats.
 Identities = 15/124 (12%), Positives = 38/124 (30%), Gaps = 5/124 (4%)

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           IL+   D + ++++E  I   N     + G      L K                Y T  
Sbjct: 21  ILDLLPDALLMVDQENTIFYANATAEAMAGATRGAFLGKNIWQCPNTPRVINAPLYNTFF 80

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKK 576
            +      L+   +          + I       +    +  H+ + +   ++ L  +++
Sbjct: 81  QATQTHTPLQVEYVSPL-THTWRHVHIAPT----AEGAMVHFHETTLYTMLQDALFQSEQ 135

Query: 577 IAEK 580
           + + 
Sbjct: 136 LRQA 139


>gi|332703674|ref|ZP_08423762.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332553823|gb|EGJ50867.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 1087

 Score =  340 bits (871), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 136/807 (16%), Positives = 266/807 (32%), Gaps = 85/807 (10%)

Query: 65  TNYLDSENTFVFDPIPRTVR-FTWNIDAHGYLKEI-SEELPKTIGNYAFKMIGMRLCDVS 122
           T     E+   F           +  D       I +       G    ++IG RL D+ 
Sbjct: 154 TEKALRESEERFQIALLHSPAVVFAKDRDLRFTWIYNPPF----GLSPDEIIGHRLQDLF 209

Query: 123 DILHIDPNNHIGD-LLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF 181
                D    I   +++   +   +    PI         D+A       + + +G  G 
Sbjct: 210 KQGEDDIQESIARTVIETGRSARLEA---PIRVHGEITWWDIALEQTRDEHGQATGIIGV 266

Query: 182 GIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEK-EKYDIFSQQSPPPHLR--MKN 238
                        A  +  ++KF  +        S+   E                 +++
Sbjct: 267 AF--NITDRMKAEASLRESEEKFRKIFSSCPDPISISTLEDGRYIEVNDAFTRTSGFLRD 324

Query: 239 KVS---SLTEYYAHKDDVLKTEKYPLLTSE-ESSLPEQEDFHTINLNQYTKKQYFGTLQN 294
           +V    SL        +  +     L       +   +                   +  
Sbjct: 325 EVIGKSSLDLGVWRAPEDRQQVIDKLKDKGSLRNFVSKRRTKAGKARTVLLSTEILEIAG 384

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTK 353
                             +   + E      V+  P     +       Y NP+F  +T 
Sbjct: 385 QPCLLSVSKDITLLKKRESELRKREADYRSLVEHSPDSIVRFDRKLRRIYINPAFERVTG 444

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
            +    +      +T      L  N++     L     T +     L  +  + +  L  
Sbjct: 445 ARQECSLNKTPSETT-----GLPVNSSAFEDTLREIFETGVPKEIDLSYLNPSGQRILHC 499

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL------EATSDGIAI 467
             +P    +   E      I  +  + +  +  M+++  +L ++L      E+T D I  
Sbjct: 500 WLVPEFGHDGQVET--VLSIAHDITEHKQAEASMQLQQDRLETLLRLSQMTESTEDEILG 557

Query: 468 INREGIILSTNRAVSKLFGYPVEDI----------LRKPFTVFLEQNTPSVMNHYLT-EI 516
              E  I  T      L     ++             +   V +   + ++    L    
Sbjct: 558 FILETSIRLTGSRFGFLGAVHRDNGFMTFPKCSIGTMEHCDVKILPESFALDRAGLWSNC 617

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-------CYSLTM---------HD 560
           L       +   +     ++ L    + I +L            +   +          D
Sbjct: 618 LRQAKPSIINDYSAEHPAKKGLPPGHVPITRLLAVPLLDSGKVTFIAVVANKPDDYDQSD 677

Query: 561 ISE-------------WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
           I++              ++ +     A++ AE  +  K++FLA +SHE+RTPL  ++G  
Sbjct: 678 ITQVTLLLEGMLAHLKRRRAEEGHKQAREEAEAANRAKTEFLANMSHELRTPLNGVLGMI 737

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
           E+          +P+  ++      SG ++LDI+NDLLD++KIE+GK+ L  +  +L EA
Sbjct: 738 EL----AGMSCADPKTHDFLRMAKDSGRMLLDIINDLLDLAKIEAGKVELEKKVFNLREA 793

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII 726
           +      V + A  K +        ++P  ++ DL   +Q+  N++ NA+ FT  G ++ 
Sbjct: 794 LDNTFYPVCMVAERKGLRCSLVVDQSVPEHLVGDLGRFRQVVTNLVGNAVKFTEKG-EVN 852

Query: 727 ISTTH------TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
           +S         T + ++  RV+DTG+G+           F Q+  S   +  GTGLGL +
Sbjct: 853 LSVMRIPHPFATDSVQIRFRVKDTGIGIPQDMHNAIFDDFTQVGRSYSSKYGGTGLGLAI 912

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEII 807
           ++ +V+   G   + S   KG+     
Sbjct: 913 SRNLVNLMGGDISVVSEEGKGSTFTFT 939



 Score =  163 bits (413), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 65/515 (12%), Positives = 143/515 (27%), Gaps = 29/515 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH-IDPNNHIGDLLKR----- 139
            W  DA   LK +++     +G     +    L DV+  L  ++P+     L +      
Sbjct: 43  IWFCDAEANLKLLNKAARTELGLETSDLF-RPLDDVNAQLEILNPDGTPRSLEEAPLRLA 101

Query: 140 --QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG 197
                  G+  +  ++ T      +  A P+     + +G    G+V             
Sbjct: 102 LKGQAVQGEERIRHLK-TGELRWREYRANPVRDERGDITGA--VGLVRDITGIKRTEKAL 158

Query: 198 KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257
           +  +++F             +          +PP  L     +    +    + +    E
Sbjct: 159 RESEERFQIALLHSPAVVFAKDRDLRFTWIYNPPFGLSPDEIIGHRLQDLFKQGEDDIQE 218

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR----NHPSLSA 313
                  E       E    ++             ++   ++   +       +     A
Sbjct: 219 SIARTVIETGRSARLEAPIRVHGEITWWDIALEQTRDEHGQATGIIGVAFNITDRMKAEA 278

Query: 314 YFDEGENLTPETVDKCPIPFFV--YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
              E E    +    CP P  +     G     N +F   + +   + I    G S+L  
Sbjct: 279 SLRESEEKFRKIFSSCPDPISISTLEDGRYIEVNDAFTRTSGFLRDEVI----GKSSLDL 334

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
               +  +  + +   +   +               +    +      +    P  +   
Sbjct: 335 GVWRAPEDRQQVIDKLKDKGSLRNF--VSKRRTKAGKARTVLLSTEILEIAGQPCLLSV- 391

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
               +    +  + ++        S++E + D I   +R+   +  N A  ++ G   E 
Sbjct: 392 --SKDITLLKKRESELRKREADYRSLVEHSPDSIVRFDRKLRRIYINPAFERVTGARQEC 449

Query: 492 ILRKPFTVFLE-QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL-LSLRIIIKKLP 549
            L K  +         S     L EI    + + ++   L  + +  L   L        
Sbjct: 450 SLNKTPSETTGLPVNSSAFEDTLREIFETGVPKEIDLSYLNPSGQRILHCWLVPEFGHDG 509

Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
                    HDI+E KQ +  +   +   E     
Sbjct: 510 QVETVLSIAHDITEHKQAEASMQLQQDRLETLLRL 544



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/296 (8%), Positives = 71/296 (23%), Gaps = 14/296 (4%)

Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFL 349
            +   S E              A      NL    ++      +      NL   N +  
Sbjct: 2   QVSRESYEQLRMELEVERARAEALA-CDRNLLTALIESLSDEIWFCDAEANLKLLNKAAR 60

Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
                ++ D       ++  L+                R      A              
Sbjct: 61  TELGLETSDLFRPLDDVNAQLEILNPDGTPRSLEEAPLRLALKGQAVQGEERIRHLKTGE 120

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469
                +      ++  +     G+  +    +  ++ +     +    L  +   +   +
Sbjct: 121 LRWREYRANPVRDERGDITGAVGLVRDITGIKRTEKALRESEERFQIALLHSPAVVFAKD 180

Query: 470 REGIILST-NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528
           R+       N      FG   ++I+        +Q    +       ++       LE  
Sbjct: 181 RDLRFTWIYNPP----FGLSPDEIIGHRLQDLFKQGEDDIQESIARTVIETGRSARLEAP 236

Query: 529 TLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEK 580
                   ++    I +++                +I++  + +  L  +++   K
Sbjct: 237 IRVH---GEITWWDIALEQTRDEHGQATGIIGVAFNITDRMKAEASLRESEEKFRK 289



 Score = 65.0 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 51/161 (31%), Gaps = 9/161 (5%)

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
              +  E    R     +  +   L +++E+ SD I   + E  +   N+A     G   
Sbjct: 8   YEQLRMELEVERARAEALACDRNLLTALIESLSDEIWFCDAEANLKLLNKAARTELGLET 67

Query: 490 EDI------LRKPFTVFLEQNTPSVMNHY-LTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
            D+      +     +     TP  +    L   L     Q  E+I    T E +    R
Sbjct: 68  SDLFRPLDDVNAQLEILNPDGTPRSLEEAPLRLALKGQAVQGEERIRHLKTGELRWREYR 127

Query: 543 IIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKE 581
               +            + DI+  K+ +  L  +++  +  
Sbjct: 128 ANPVRDERGDITGAVGLVRDITGIKRTEKALRESEERFQIA 168


>gi|217037913|gb|ACJ76428.1| hybrid sensor kinase RscS [Aliivibrio fischeri]
          Length = 943

 Score =  340 bits (871), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 102/381 (26%), Positives = 180/381 (47%), Gaps = 13/381 (3%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +    + E E  +L  + E   D I I++++  +   N++ S L G  +EDI  K     
Sbjct: 264 KRELIRSEKEKTKLALVAEYAHDAIFILDKQSKLTWINQSYSVLSGNTLEDIKGKDLPSV 323

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSL 556
           L+        +  T + SL    ++      + K+  L  + + +  +   +     Y +
Sbjct: 324 LQ-LDKIQHANIFTLLQSLKTGTSVSFELTNNHKDGTLYWIDVSVTPIFKPNGNIMHYVV 382

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
              DI++ K+ ++KL  A   A+  +  KS FLA +SHE+RTPL  I+G +++I++    
Sbjct: 383 VERDITKKKELEDKLIKAADKADVSNKAKSTFLATMSHELRTPLNGILGMAQIIESN--- 439

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
            + +    +    +  SG+ +L ++ND+LD SKIE  K+ L+      ++ +    +   
Sbjct: 440 -IKDEEQHKQIKVLLESGDHLLSLLNDILDFSKIEQNKLELNHASFYFNDVIDPIANTYL 498

Query: 677 LYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSN 734
               +K +    +   N   I L D   ++QI  N++SNA+ FT  G   +  S T T  
Sbjct: 499 SICEDKGLQFIINNNINEKTIFLGDKPRIRQIIFNLISNAVKFTHKGSITLNFSHTLTPK 558

Query: 735 EE--VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
            E  V ++V+DTG+G+    L+   +PF Q   S   +  GTGLGL + K + D   G  
Sbjct: 559 GEQAVQIKVQDTGIGIRKKRLKHIFEPFIQAETSTTRQYGGTGLGLAIVKQLTDTMKGYI 618

Query: 793 YIFSTPAKGTLIEIIFPLYDT 813
            + S+  KGT   ++ PL  T
Sbjct: 619 SVNSSEGKGTCFTLVLPLEIT 639



 Score = 44.2 bits (103), Expect = 0.081,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 43/142 (30%), Gaps = 6/142 (4%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL--LKRQNTW 143
            + +D    L  I++      GN    + G  L  V  +  I   N    L  LK   + 
Sbjct: 288 IFILDKQSKLTWINQSYSVLSGNTLEDIKGKDLPSVLQLDKIQHANIFTLLQSLKTGTSV 347

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             + T    +GT     ID++  PI+  N     +    +        +      +   K
Sbjct: 348 SFELTNNHKDGTLY--WIDVSVTPIFKPNGNIMHY--VVVERDITKKKELEDKLIKAADK 403

Query: 204 FSHLHEIKKGHSSVEKEKYDIF 225
               ++ K    +    +    
Sbjct: 404 ADVSNKAKSTFLATMSHELRTP 425


>gi|94263810|ref|ZP_01287616.1| ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
 gi|93455821|gb|EAT05988.1| ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
          Length = 970

 Score =  340 bits (871), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 120/681 (17%), Positives = 250/681 (36%), Gaps = 56/681 (8%)

Query: 168 IYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ 227
           +      F+G     I+H          L +   +    +   +     +        S 
Sbjct: 198 VLDALVAFAGVEKILIIH-------KELLEREQWEAGMAMLGREADWDRLPDHAVIYASI 250

Query: 228 QSPPPHLRMKNKVSSLTEYYAHKDD-VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKK 286
             P   +R         ++ A  D+  +    + L+ +  + +  +     + L   T  
Sbjct: 251 SLPEQAVRFICCDDPDHDHRATTDEIRIDGGAWRLMLTPVADVSGRRVGKLLLLLDVTGA 310

Query: 287 QYFGTLQNNSKESFEYLSH---------------RNHPSLSAYFDEGENLTPETVDKCPI 331
           +     Q  +  +                      +  +  A   + E       ++ P+
Sbjct: 311 KVEQRRQMLATGAGAVALLLALLGLTFVTLRRTDADILAQKAELRKSEERYRHISEEMPL 370

Query: 332 PFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390
               +     + Y N ++      K+ D++     ++ +  +   +    I  + +    
Sbjct: 371 MICRFLPDYTISYVNRAYCDCFG-KNQDELIGVSFMTLIPVSDHDAVKATIGSLTV---- 425

Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450
                  ++ H      +  +   +      ++    +    I  +  ++R  ++ +   
Sbjct: 426 --DAPVVSQDHRAIMPDQTIVWHRWTDRALFDETGIIVAYQSIGEDITESRQAQQALRQA 483

Query: 451 VMQLCSILEATSDGIAII-------NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
                 I+     GI +        +R   ++S N A  ++ G  V D++ K        
Sbjct: 484 HD----IISNMQIGIYVYHLEDIDDDRTLRMISANPATEEITGVKVIDVVGKTLDENFPS 539

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT-MHDIS 562
                +     E+      +  E +      +  ++     +   P    +      +I+
Sbjct: 540 LREMNLPQGFAEVARSGEARVYEDVVY---DDNWVVRACFSVMAFPLPGNHVGIAFENIT 596

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E K+ + +L  AK+ A+  +  KS FLA ++HE RTP+ A+I  + +   +      NPR
Sbjct: 597 ERKKAEEELRTAKQQADSATLAKSRFLANMNHEFRTPMNAVINLTRLALEEE---ELNPR 653

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             +Y   + R+G  +L I+ND+LD SKIE+GK+ L   P  L   + + +  +   A++K
Sbjct: 654 QRDYLGKVLRAGEDLLVIINDILDFSKIEAGKLELDPVPFGLRGLIDDVVRPLSPNAHDK 713

Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI-IISTTHTSNEEVILR 740
            I  R   A  +P  ++ D   ++Q+  N+  N I FT  G  +  +       ++V L 
Sbjct: 714 AIKFRVELAEELPERLVGDATRLRQVLFNLADNGIKFTEQGEVLLKVQLLKRQGDQVTLA 773

Query: 741 --VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
             V D+G+G++  E ++  +PF Q  +S   R  GTGLGL + K ++     +  + S P
Sbjct: 774 FMVSDSGIGISAAEQQRLGEPFSQADDSISRRYGGTGLGLAITKQLLVLMGSELEVESVP 833

Query: 799 AKGTLIEIIFPLY---DTSHP 816
            +G+       L    DTS P
Sbjct: 834 GEGSNFAFTIQLALADDTSTP 854



 Score = 43.9 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 33/389 (8%), Positives = 87/389 (22%), Gaps = 20/389 (5%)

Query: 70  SENTFVFDPIPRTV---RFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH 126
           SE  +        +   RF         +  ++       G    ++IG+    +  +  
Sbjct: 357 SEERYRHISEEMPLMICRFL----PDYTISYVNRAYCDCFGKNQDELIGVSFMTLIPVSD 412

Query: 127 IDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHV 186
            D        L        +     I      V        ++        ++  G    
Sbjct: 413 HDAVKATIGSLTVDAPVVSQD-HRAIMPDQTIVWHRWTDRALFDETGIIVAYQSIG--ED 469

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY 246
                  +   ++     S++      +   + +        S  P      +++ +   
Sbjct: 470 ITESRQAQQALRQAHDIISNMQIGIYVYHLEDIDDDRTLRMISANP---ATEEITGVKVI 526

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
                 + +        +      E        + +         ++         L   
Sbjct: 527 DVVGKTLDENFPSLREMNLPQGFAEVARSGEARVYEDVVYDDNWVVRACFSVMAFPLPGN 586

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
           +         E +    E               +   A   FL    ++    +     L
Sbjct: 587 HVGIAFENITERKKAEEELRTAKQQA------DSATLAKSRFLANMNHEFRTPMNAVINL 640

Query: 367 STL-LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
           + L L+  +L+         + R+    +     +          L +  +PF       
Sbjct: 641 TRLALEEEELNPRQRDYLGKVLRAGEDLLVIINDILDFSKIEAGKLELDPVPFGLRGLID 700

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
           + +        D   +      E    +L
Sbjct: 701 DVVRPLSPNAHDKAIKFRVELAEELPERL 729


>gi|256830078|ref|YP_003158806.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256579254|gb|ACU90390.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 1055

 Score =  340 bits (871), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 95/380 (25%), Positives = 182/380 (47%), Gaps = 18/380 (4%)

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
               +   R+++    +   +  A+  GIAI + +GIIL  N+ +S++ GY  ++++   
Sbjct: 539 RRQVKKRTRELQESEERFKVLHNASFGGIAIHD-QGIILDCNQGLSEITGYSADELIGMN 597

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556
             + + +++  ++   +  +   D         LG  K  +   +R+  + +P+ + +  
Sbjct: 598 GLMLISEDSRDMVMSNI--LFGDDGP----YEALGLRKNGEEYPVRLEARNIPYKAKHVR 651

Query: 557 T--MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+ +  L  AK  AE  +  KS+FLA +SHEIRTP+  ++G  ++++   
Sbjct: 652 VTEFRDITEQKRAEEALLQAKTQAETANQAKSEFLANMSHEIRTPINGVMGMLQLLETTP 711

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                +     Y +    + N +  ++ D+LD+S++E+GKM +   P  + + +     L
Sbjct: 712 L----DAEQASYIHMATEAANRLTRLLTDILDLSRVEAGKMEIREAPFQIQDIIDSVSGL 767

Query: 675 VQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-- 731
             + A  K + +    A  +P +L  D   V+Q+  N++ NA+ FT  G  ++  T    
Sbjct: 768 FAVTARNKNVALECRLAPGMPEVLVGDEMRVRQVLFNLVGNALKFTERGRVVMDITALPA 827

Query: 732 TSNEE--VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
             + +  V  RV DTG+G+    L    +PF Q+ NS     +G GLGL + + +V    
Sbjct: 828 KDDGDYRVHFRVTDTGIGIAEDRLGDIFEPFRQVENSLTRNYQGAGLGLSIVQRLVGLMG 887

Query: 790 GKFYIFSTPAKGTLIEIIFP 809
           G   I ST  +GT   ++ P
Sbjct: 888 GTITIESTLGQGTSAHVVLP 907



 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/234 (10%), Positives = 60/234 (25%), Gaps = 24/234 (10%)

Query: 272 QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI 331
                   L           L       + ++  R     +    E E       +    
Sbjct: 506 HPPSFAAILRNLAMVVAPLLLLLFGFFLWSWMLRRQVKKRTRELQESEERFKVLHNASFG 565

Query: 332 PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG-------GLSTLLDAPKLSDNNAIKPV 384
              ++  G +   N     +T Y + + I + G           ++      D+   + +
Sbjct: 566 GIAIHDQGIILDCNQGLSEITGYSADELIGMNGLMLISEDSRDMVMSNILFGDDGPYEAL 625

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
            L   +            I +  ++     F    +  +  E + Q   + E  +   ++
Sbjct: 626 GLR-KNGEEYPVRLEARNIPYKAKHVRVTEFRDITEQKRAEEALLQAKTQAETANQAKSE 684

Query: 445 RKMEIEVMQ---------LCSILEATSDGIAIINREG--IILSTNRAVSKLFGY 487
               +             +  +LE T      ++ E    I     A ++L   
Sbjct: 685 FLANMSHEIRTPINGVMGMLQLLETTP-----LDAEQASYIHMATEAANRLTRL 733



 Score = 47.7 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 26/259 (10%), Positives = 65/259 (25%), Gaps = 19/259 (7%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151
            G + + ++ L +  G  A ++IGM    +      D  + +   +   +    +     
Sbjct: 572 QGIILDCNQGLSEITGYSADELIGMNGLMLISE---DSRDMVMSNILFGDDGPYEALGLR 628

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
             G    V ++   +P  +++   + F                    +   +    ++ K
Sbjct: 629 KNGEEYPVRLEARNIPYKAKHVRVTEF------RDITEQKRAEEALLQAKTQAETANQAK 682

Query: 212 KGHSSVEKEKYDI--------FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
               +    +                  P    +     +    A++   L T+   L  
Sbjct: 683 SEFLANMSHEIRTPINGVMGMLQLLETTPLDAEQASYIHMATEAANRLTRLLTDILDLSR 742

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
            E   +  +E    I     +    F     N   + E       P +    +       
Sbjct: 743 VEAGKMEIREAPFQIQDIIDSVSGLFAVTARNKNVALECRLAPGMPEVLVGDEMRVRQV- 801

Query: 324 ETVDKCPIPFFVYSHGNLF 342
              +           G + 
Sbjct: 802 -LFNLVGNALKFTERGRVV 819


>gi|22298825|ref|NP_682072.1| two-component hybrid sensor and regulator [Thermosynechococcus
            elongatus BP-1]
 gi|22295006|dbj|BAC08834.1| two-component hybrid sensor and regulator [Thermosynechococcus
            elongatus BP-1]
          Length = 1353

 Score =  340 bits (871), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 118/753 (15%), Positives = 261/753 (34%), Gaps = 72/753 (9%)

Query: 95   LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPIE 153
            +  ++    +  G  A ++IG     +       P    I + +K+  +       +   
Sbjct: 342  VIYVNPAFERMTGYRATEVIGKNCRFLQGSDRHQPGATAIRNAIKKGQSCRVVLRNYRKN 401

Query: 154  GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
            G       +LA  PIY+   E + + G           + +     L ++      + + 
Sbjct: 402  G--QLFWNELAISPIYNEFGEITHYIGI-----QSDVTERQRAQLFLQQQVKRTLLLNRI 454

Query: 214  HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE 273
               + ++       ++    + +   VS    +   ++         L+           
Sbjct: 455  TEEIRQQIEREHICRTAVQQVGVTLNVSRCLLFVYQEN---APTPMELVAEYCGPGVPSV 511

Query: 274  DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV------D 327
            +   ++L Q           ++   S + + + +  +    + E   +    +      +
Sbjct: 512  NECDLDLTQMRAPFLASVFASDEVFSCDDVQNDDRLAPLHAYCEALRVKSALIVRTAYRN 571

Query: 328  KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
            +      ++          +   L K  +         +  L    +       +     
Sbjct: 572  QANGLLILHQCDRQRRWTDAIQSLLKSVAAQVGIGLAQVQLLEQETRQRQQLQQQMQRAL 631

Query: 388  RSD------RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
              +      R  +       T       +  +      + +  P         P+  +  
Sbjct: 632  LLNQITEQIRQSLDTETVFATTVTQIGQAFGVNRCLIHRYDPGPPP-----HIPDVAE-- 684

Query: 442  INKRKMEIEVMQLCSI---LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
                 ++     +  I   +E     +A+++ +  ++S N                    
Sbjct: 685  ----YLQPGYASMRGISIPVENNPHALAVLSGDTAVVS-NDVTQ-----DPLLANAMHLC 734

Query: 499  VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM 558
               +  +   +      + +  +            ++ +     I +  L   +      
Sbjct: 735  HQFQIQSMLAIRTSYKGVPNGIIG------LHQCDRQRQWTPEEIEL--LEAVAAQVGIA 786

Query: 559  HDISEWKQEKN-----------KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
               +E  + +            +L  A+  AE  +  KS+FLA +SHEIRTP+ A++GF+
Sbjct: 787  IAQAELLRHEQQQRQLLAQQNQELEQARLQAELANRAKSEFLATMSHEIRTPMNAVLGFT 846

Query: 608  EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
             ++ +       N +  ++   + ++G  +L I+ND+LD SKIESGK+ L  +P  + E 
Sbjct: 847  NLLLDTPL----NEQQRDFLQTLHQAGEALLTIINDILDFSKIESGKLVLEQQPFDVREC 902

Query: 668  VSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII 726
            V + +SL+   A EK + +  +     P +I  D+  ++QI +N++ N I FT  G Q+ 
Sbjct: 903  VEDVLSLLASKAQEKELELLYTCTPETPAQIKGDVTRLRQILVNLVGNGIKFTHEG-QVA 961

Query: 727  ISTT---HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
            +          + +  +V+DTG+G+    L++  KPF Q+  S      GTGLGL ++K 
Sbjct: 962  VHVGVLKREGKDFLQFQVQDTGIGIPRDRLDRLFKPFSQVDASTTREYGGTGLGLVISKR 1021

Query: 784  MVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
            + +   G   + ST  +GT       L +   P
Sbjct: 1022 LCELMGGDMSVESTEGQGTTFTFTI-LAEGQKP 1053



 Score = 75.4 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 22/187 (11%), Positives = 57/187 (30%), Gaps = 18/187 (9%)

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII 474
                      + + +  I      T+     ++       ++  +++  I     +GII
Sbjct: 142 VQQQTLRTLARQVINELEIRHHLEVTQQQLAYIQQMSSLQEAVFNSSNHAIIATRTDGII 201

Query: 475 LSTNRAVSKLFGYPVEDILRK-PFTVFLEQNTPSVMNHYLTEILSLDLRQTL-------- 525
              NRA  +  GYP  +++ K     F +          L+  L   +            
Sbjct: 202 TLMNRAAQQWLGYPASELVGKATPERFHDPQEMERYAQILSAQLGEPIPAGFETLVARAR 261

Query: 526 -----EKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKK 576
                E+      ++     + + +  +         +  +  DI++ KQ +  L   ++
Sbjct: 262 RGLADEQEWTFVRRDGSCFPVSLSVTPMHDRQGQLIGFLESAVDITDKKQIEAALRLRER 321

Query: 577 IAEKESS 583
                ++
Sbjct: 322 AIIASTN 328



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/249 (9%), Positives = 69/249 (27%), Gaps = 13/249 (5%)

Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270
           +     +     ++  + +P      +          A   + +      L+      L 
Sbjct: 206 RAAQQWLGYPASELVGKATPERFHDPQEMERYAQILSAQLGEPIPAGFETLVARARRGLA 265

Query: 271 EQED--FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
           ++++  F   + + +        + +   +   +L      +     +    L    +  
Sbjct: 266 DEQEWTFVRRDGSCFPVSLSVTPMHDRQGQLIGFLESAVDITDKKQIEAALRLRERAIIA 325

Query: 329 CPIPFFVYSHGN----LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
                 +  +      + Y NP+F  +T Y++ + I    G +                +
Sbjct: 326 STNGIVITDYRQPDNPVIYVNPAFERMTGYRATEVI----GKNCRFLQGSDRHQPGATAI 381

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
                     +    L   + N               N+F E     GI+ +  + +  +
Sbjct: 382 RNAIKKGQ--SCRVVLRNYRKNG-QLFWNELAISPIYNEFGEITHYIGIQSDVTERQRAQ 438

Query: 445 RKMEIEVMQ 453
             ++ +V +
Sbjct: 439 LFLQQQVKR 447



 Score = 55.4 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/249 (9%), Positives = 61/249 (24%), Gaps = 22/249 (8%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGM-RLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150
            G +  ++    + +G  A +++G        D   ++    I      +    G  TL 
Sbjct: 198 DGIITLMNRAAQQWLGYPASELVGKATPERFHDPQEMERYAQILSAQLGEPIPAGFETLV 257

Query: 151 PIEGTNLY--------------VPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRAL 196
                 L                P+ L+  P++ R  +  GF    +           A 
Sbjct: 258 ARARRGLADEQEWTFVRRDGSCFPVSLSVTPMHDRQGQLIGFLESAV--DITDKKQIEAA 315

Query: 197 GKRLDKKFSHLHE--IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254
            +  ++         +   +   +     +          R    V      +    D  
Sbjct: 316 LRLRERAIIASTNGIVITDYRQPDNPVIYVNPAFERMTGYRATE-VIGKNCRFLQGSDRH 374

Query: 255 KTEKYPLLTSEESSLPEQEDFH--TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
           +     +  + +     +        N   +  +     + N   E   Y+  ++  +  
Sbjct: 375 QPGATAIRNAIKKGQSCRVVLRNYRKNGQLFWNELAISPIYNEFGEITHYIGIQSDVTER 434

Query: 313 AYFDEGENL 321
                    
Sbjct: 435 QRAQLFLQQ 443


>gi|317151760|ref|YP_004119808.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316942011|gb|ADU61062.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 1180

 Score =  340 bits (871), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 101/542 (18%), Positives = 206/542 (38%), Gaps = 57/542 (10%)

Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFL 349
             +   +++ + L  R     S    E         D      F++   G +  AN   L
Sbjct: 381 RAETELRKTHQSLEERVRERTS-EVKETMEALRTVFDASHDAIFIHDVTGRILEANERML 439

Query: 350 LLTKYKSVDDIE------------IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397
            +    +    +                LS+   +    +    +       D       
Sbjct: 440 KMYGLSADQIHDVSIARDISSRDNAVYRLSSYWRSVLNGEPQNFEWKARRPHDGAEFDVE 499

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
             L+ I ++ + ++                        +    + ++ ++   + +  +I
Sbjct: 500 VYLNRIVFHGQEAILTNVR-------------------DITVRKESENRIRQTLSKFEAI 540

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
           LE +  GIA+ ++   + + NR  +++FG    +++       L   + + +  ++    
Sbjct: 541 LENSLMGIAM-SKGRRLATINRRGAEIFGRTPAELVGSELAALLS--SSNAVTDFVRTAR 597

Query: 518 -SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSH 573
            +L               E   +  R+  K +   S          DI+  ++ ++ L  
Sbjct: 598 DALSQSGEFNTEQAFLDSEGNTVWCRMYAKAVDQGSLDKGVIWAWDDITAQRRAQDDLMR 657

Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
           A++ AE  +  KS+FLA +SHEIRTP+ AI+G +++               +Y   +  S
Sbjct: 658 AREDAEAANRAKSEFLAAMSHEIRTPMNAIVGMTDITLQTSLTT----EQRDYLKTVMDS 713

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693
              +L I+ND+LD+SKIE+ K+ L      L   V   +  +++ A +K +        +
Sbjct: 714 AQHLLGIINDILDLSKIEARKLCLDRVDFDLPSHVRTTLKGLEMQARQKGLDFVLELDQD 773

Query: 694 IPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNE-------EVILRVRDT 744
           +P  +  D  S++Q+ +N++ NAI FT  G  ++++S      +        V   V DT
Sbjct: 774 VPACVKGDPLSLRQVLMNLVGNAIKFTHKGSIRVLVSPAQAQPDADDQRTVGVRFEVADT 833

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G+    +    + F Q          GTGLGL + K ++    G   + ST  +G++ 
Sbjct: 834 GIGIPESFMGTIFQSFSQT----TRAFGGTGLGLAICKQLIGLMGGDISVTSTMGRGSVF 889

Query: 805 EI 806
             
Sbjct: 890 SF 891



 Score = 37.7 bits (86), Expect = 9.1,   Method: Composition-based stats.
 Identities = 34/255 (13%), Positives = 77/255 (30%), Gaps = 36/255 (14%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR--QNTWYGKT 147
           D  G + E +E + K  G  A ++      DVS    I   ++    L    ++   G+ 
Sbjct: 426 DVTGRILEANERMLKMYGLSADQI-----HDVSIARDISSRDNAVYRLSSYWRSVLNGEP 480

Query: 148 ------TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
                    P +G    V + L  +  + +    +       V    V  +     ++  
Sbjct: 481 QNFEWKARRPHDGAEFDVEVYLNRIVFHGQEAILTN------VRDITVRKESENRIRQTL 534

Query: 202 KKFSHLHEIK---------KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD 252
            KF  + E           +  +++ +   +IF +    P   + +++++L        D
Sbjct: 535 SKFEAILENSLMGIAMSKGRRLATINRRGAEIFGR---TPAELVGSELAALLSSSNAVTD 591

Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN---NSKESFEYLSHRNHP 309
            ++T +  L  S E     ++ F     N    + Y   +     +    + +       
Sbjct: 592 FVRTARDALSQSGE--FNTEQAFLDSEGNTVWCRMYAKAVDQGSLDKGVIWAWDDITAQR 649

Query: 310 SLSAYFDEGENLTPE 324
                          
Sbjct: 650 RAQDDLMRAREDAEA 664


>gi|75907850|ref|YP_322146.1| multi-sensor signal transduction histidine kinase [Anabaena
            variabilis ATCC 29413]
 gi|75701575|gb|ABA21251.1| multi-sensor signal transduction histidine kinase [Anabaena
            variabilis ATCC 29413]
          Length = 1026

 Score =  340 bits (871), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 101/651 (15%), Positives = 215/651 (33%), Gaps = 41/651 (6%)

Query: 177  GFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM 236
              R    + + R  +   ++          +       +   +   ++F   S    + +
Sbjct: 397  HLRKIAELELRRQKDLCESIYNESADALFLVDPQTLLIADCNRRAVELFEADSKSELISI 456

Query: 237  KNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKK-----QYFGT 291
            K     L  + + +   + T+                  +    N   K+          
Sbjct: 457  KVNTLQLQPFTSDELAQITTQIQQKGVWNTEIQYLTRKGNLFWGNLAAKEVTMVCDRPSV 516

Query: 292  LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY------SHGNLFYAN 345
            + N                      + E    +     P   ++       +     Y +
Sbjct: 517  ITNQVVYLVRVTDITERKRAETALLQSEARFQKIAAASPAQIYILAYYPDINQMRYEYIS 576

Query: 346  PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405
                 + + +    +        LL   ++  ++      L       +   A    I  
Sbjct: 577  SGVQEIQELEPHQVL-----ADPLLTYQQVHPDDLALYNQLTTRSLKTLKPFAHEWRIIT 631

Query: 406  NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465
                   +      +     E +   G+  +  D +  +  +     +          G+
Sbjct: 632  PSGKVKWVRANSRPERRSNGE-IAWYGVVLDITDLKQAEAALRESEERFRHAFYDAPIGM 690

Query: 466  AIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
            A++   +   L  N  + ++ GY   +         +       + + +T++LS    + 
Sbjct: 691  ALLGLEDQQWLQANPMLREMLGYSELEFFSFQAFEIIHPEDIHRLENCITQVLSNQNPRV 750

Query: 525  LEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEK 580
             +          ++      +  +         Y L + DI+E +  +            
Sbjct: 751  -QVELRYLCNGGRIAWGLTSLSLVRDCQNQPLYYVLQIQDITEQQAIE------------ 797

Query: 581  ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
                K++F++ VSHE+RTPLTAI GF   + N       + +          + + ++ +
Sbjct: 798  --QIKNEFISIVSHELRTPLTAIQGFL-GLLNTGIYDNKSQKAKWMIQQALTNSDRLVRL 854

Query: 641  VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILAD 700
            VND+LD+ ++ SG++ L  E     + +  A+  VQ  A    I I  S       + A 
Sbjct: 855  VNDILDLERLSSGRVQLVKEVCHAADLMQRAVEGVQSIALASAITI--SLTPTTACVWAS 912

Query: 701  LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760
               + Q  +N+LSNAI F+P    I +S    S+  V+ +V+D G G+   +LE   + F
Sbjct: 913  PDLIIQTLINLLSNAIKFSPHNSVITLSAQPQSD-WVLFKVQDQGRGIPANKLETIFERF 971

Query: 761  GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
             Q+  S      GTGLGL + ++++  + G  +  ST  +G+      P+ 
Sbjct: 972  QQVDISDARAKGGTGLGLAICQSIIQQHDGSIWAESTLGEGSTFYFTLPIS 1022



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 65/192 (33%), Gaps = 16/192 (8%)

Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465
               +L +    F   +          +  E    +I + ++  +     SI   ++D +
Sbjct: 365 AGAIALGLFLTQFIIRSMEQLGQTSLALYNELHLRKIAELELRRQKDLCESIYNESADAL 424

Query: 466 AIINRE-GIILSTNRAVSKLFGYP--VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522
            +++ +  +I   NR   +LF      E I  K  T+ L+  T   +    T+I      
Sbjct: 425 FLVDPQTLLIADCNRRAVELFEADSKSELISIKVNTLQLQPFTSDELAQITTQIQQKG-- 482

Query: 523 QTLEKITLGSTKEEKLLS----------LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572
                     T++  L            +      +     Y + + DI+E K+ +  L 
Sbjct: 483 -VWNTEIQYLTRKGNLFWGNLAAKEVTMVCDRPSVITNQVVYLVRVTDITERKRAETALL 541

Query: 573 HAKKIAEKESSH 584
            ++   +K ++ 
Sbjct: 542 QSEARFQKIAAA 553


>gi|281354822|ref|ZP_06241316.1| PAS/PAC sensor hybrid histidine kinase [Victivallis vadensis ATCC
           BAA-548]
 gi|281317702|gb|EFB01722.1| PAS/PAC sensor hybrid histidine kinase [Victivallis vadensis ATCC
           BAA-548]
          Length = 1137

 Score =  340 bits (871), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 111/589 (18%), Positives = 218/589 (37%), Gaps = 22/589 (3%)

Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291
               M  +  +     +   D ++      +     +    E  + +       +     
Sbjct: 406 FPREMSCREGAGVHNISRLADKVQQSFSAWIQEAFRTGQRMEKDYELEGAHRHVEFIPLP 465

Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE---TVDKCPIPFFVYS-HGNLFYANPS 347
             N+  E        +   L         +  +   T++              +   NP 
Sbjct: 466 KNNSFHEEAVMWISSDQTELHQAHRMVSRIAEQFRLTLESIGDGVIATDSEERITLLNPI 525

Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
              +T Y  +++               L       P+    S    I  +     I  + 
Sbjct: 526 AAQMTGYT-LEEARGKKLNEVFNIISYLDGRKVESPLTKALSTGKIIELANHTDLIARDG 584

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
             +  +        +   + +    +  +  +    + ++    + L +  +        
Sbjct: 585 -TARHIADSAAPIRDVEGKIIGGVLVFRDVTEEYKKRDRLRTHSVILANAAKIAKFFYFQ 643

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
            +  G + + +    + F     +  R P   +L  +     +      L   +      
Sbjct: 644 CDNTGRLTALSAQNYRAF----REEERVPLAEWLAPDDRQRFDGNWNRFLESGIGGDTSS 699

Query: 528 --ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
                 + K    L     + ++         + DI+E  +++ KL  A + A      K
Sbjct: 700 FSDVFAAGKSRFELRAEKSVNEINGKWEICGVIQDITELAEQQEKLQQALEQARAADRAK 759

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
           S FLA VSHE+RTPL A+IGFSE+++     P       EY   I+ +GN +L+++ND+L
Sbjct: 760 SYFLATVSHELRTPLNAVIGFSELLQGADVEP---QEQQEYLGSINFAGNALLNLINDVL 816

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
           D+S++E+ ++ L   PV +   V E + + +  A EK + ++ ++ N  P +  D   +K
Sbjct: 817 DLSRLEADQVELDCRPVDVKRLVREIVGVFKQKAVEKNLSLQMTYTNLPPTLYLDDLRIK 876

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHT-----SNEEVILRVRDTGVGMTNYELEKAMKPF 760
           QI LN+  NA+ FT  GG + +S             +I  + DTG+G+   ++ +  +PF
Sbjct: 877 QILLNLTGNALKFTHDGG-VTVSAVFRLAEEAGQGTLIFSITDTGIGILPEKISQIFEPF 935

Query: 761 GQIPNSQQIR-GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            Q    +  R  EG+GLGL ++K +V+   GK    STP KG+   +  
Sbjct: 936 VQDSGVRGHRIYEGSGLGLAISKRLVEKMGGKLSAESTPGKGSTFTVRL 984



 Score = 65.8 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/303 (10%), Positives = 70/303 (23%), Gaps = 24/303 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCD----VSDILHIDPNNHIGDLLKRQNT-- 142
            D+   +  ++    +  G    +  G +L +    +S +      + +   L       
Sbjct: 513 TDSEERITLLNPIAAQMTGYTLEEARGKKLNEVFNIISYLDGRKVESPLTKALSTGKIIE 572

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVD-NDPRALGKRLD 201
               T L   +GT  +  I  +A PI     +  G  G  +      +      L     
Sbjct: 573 LANHTDLIARDGTARH--IADSAAPIRDVEGKIIG--GVLVFRDVTEEYKKRDRLRTHSV 628

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
              +     K  +   +                R + +V                     
Sbjct: 629 ILANAAKIAKFFYFQCDNTGRLTALSAQNYRAFREEERVPLAEWLAPDDRQRFDGNWNRF 688

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
           L S                 +   +       N     +E        +  A   E    
Sbjct: 689 LESGIGGDTSS-FSDVFAAGKSRFELRAEKSVNEINGKWEICGVIQDITELAEQQE---K 744

Query: 322 TPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
             + +++               A   FL    ++    +    G S LL    +      
Sbjct: 745 LQQALEQARAA------DR---AKSYFLATVSHELRTPLNAVIGFSELLQGADVEPQEQQ 795

Query: 382 KPV 384
           + +
Sbjct: 796 EYL 798



 Score = 40.4 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 29/274 (10%), Positives = 71/274 (25%), Gaps = 14/274 (5%)

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
                +    AG ++  + + + +    ++    +            +   +      L 
Sbjct: 280 MVSGQEQGYQAGSIARRIFSGESAAAIPVQEGEFHPVFDYPSLQRIGIDRKRLPAGTELL 339

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG 472
              + F    Q         +    +        +     ++  +       I ++NR G
Sbjct: 340 NPPVDFITRYQVEIISVLASLGLLLLLLLFRLIILARMKKRIAVLFNNLPLRICVVNRSG 399

Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
            IL   +   +       +         L        + ++ E      R   +    G+
Sbjct: 400 RILF--QHFPR--EMSCREGAGVHNISRLADKVQQSFSAWIQEAFRTGQRMEKDYELEGA 455

Query: 533 TKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD-FLAR 591
            +  + + L                  D +E  Q    +S   +          D  +A 
Sbjct: 456 HRHVEFIPL--PKNNSFHEEAVMWISSDQTELHQAHRMVSRIAEQFRLTLESIGDGVIAT 513

Query: 592 VSHE---IRTPLTA-IIGFSEVIKNQRFGPLGNP 621
            S E   +  P+ A + G++     +  G   N 
Sbjct: 514 DSEERITLLNPIAAQMTGYT---LEEARGKKLNE 544


>gi|320324827|gb|EFW80899.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. glycinea str. B076]
 gi|320329193|gb|EFW85190.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. glycinea str. race 4]
          Length = 778

 Score =  340 bits (871), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 111/426 (26%), Positives = 198/426 (46%), Gaps = 18/426 (4%)

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
           AR+H +Q N +       +  +   +         +          +R +     +L  I
Sbjct: 215 ARVHQVQRNAQRLALGHPLLPQPPEKDEIGQLGTRLVEAGQLLAERERALRDNEERLRLI 274

Query: 458 LEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           +E   D GI  ++R G + + N    ++ GY  ++I+ K F+VF               +
Sbjct: 275 IEGVKDYGIFALDRNGYVTTWNAGAERIKGYTEQEIIGKHFSVFYLPEECPQHPDM--AL 332

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNKLS 572
               +     + +    K+       ++I            +S    DIS+ +  +  L 
Sbjct: 333 REATVNGRYTEESWRRRKDGSRFWASVVITAQYDGNDELRGFSKITRDISDRRVAEIALG 392

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
            A++ AE+ S  KS+FL+R+SHE+RTPL +I+GF++++                  +I R
Sbjct: 393 TAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLL-----DMDSPASQRPQIGHILR 447

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT--SF 690
           +G  +L ++N++LDI++IE+G ++L  EPVSL   + EA+ LV   A +  I ++     
Sbjct: 448 AGQHLLKLINEVLDIARIEAGHVSLSLEPVSLSSVLEEALVLVSPMAADANIELKALPQL 507

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
            + +  ++AD + + Q+ LN+LSNAI +    GQ+ I    +    V + V DTG G+  
Sbjct: 508 PDKLG-VVADRQRLIQVLLNLLSNAIKYNRPEGQVRIEVEQSDE-RVTVSVIDTGYGIAP 565

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             + +  KPF ++        EGTGLGL L+K+M++   G   + +TPA+G    +  PL
Sbjct: 566 ERIGQLFKPFERLDA--NPSVEGTGLGLALSKSMLEMMHGTLSVQNTPAEGCRFILELPL 623

Query: 811 YDTSHP 816
                P
Sbjct: 624 VLVHAP 629



 Score = 55.4 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/259 (9%), Positives = 69/259 (26%), Gaps = 20/259 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH--IDPNNHIGDLLKRQNTW 143
            + +D +GY+   +    +  G    ++IG               P+  + +       +
Sbjct: 283 IFALDRNGYVTTWNAGAERIKGYTEQEIIGKHFSVFYLPEECPQHPDMALREATVNGR-Y 341

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGF---------RGFGIVHVNRVDNDPR 194
             ++     +G+  +  + + A   Y  N E  GF         R    + +     +  
Sbjct: 342 TEESWRRRKDGSRFWASVVITAQ--YDGNDELRGFSKITRDISDRRVAEIALGTAREEAE 399

Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254
              +   +  S +    +   +       +    SP         +    ++      + 
Sbjct: 400 RASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSPASQRPQIGHILRAGQHLLKL--IN 457

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
           +      + +   SL  +    +  L     +         +  + E  +    P     
Sbjct: 458 EVLDIARIEAGHVSLSLEPVSLSSVLE----EALVLVSPMAADANIELKALPQLPDKLGV 513

Query: 315 FDEGENLTPETVDKCPIPF 333
             + + L    ++      
Sbjct: 514 VADRQRLIQVLLNLLSNAI 532


>gi|16124840|ref|NP_419404.1| sensory box histidine kinase [Caulobacter crescentus CB15]
 gi|13421786|gb|AAK22572.1| sensory box histidine kinase [Caulobacter crescentus CB15]
          Length = 716

 Score =  340 bits (871), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 109/583 (18%), Positives = 223/583 (38%), Gaps = 36/583 (6%)

Query: 251 DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310
              L  E   L+    S          +++             ++ + + E L+      
Sbjct: 5   RRRLGVEALELIRRGTSQNALLGKGFAVDVGASGSDLCLWASGSDGEAARELLTELASLV 64

Query: 311 LSAYFDEGENLTPETVDKCPIPFFVY--SHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
           +    D         +++ P     +    G L   +P++  +      +          
Sbjct: 65  VELVADASPF---AMLEQAPDDLISHYDLTGRLLRVSPAWSRIIGGSVAEAAGRRTWD-- 119

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
              AP+     A     L R +    ++  R+  ++    +   +   P    N      
Sbjct: 120 -FIAPEDHPAVAAYYADLLR-EGAAPSSRLRM-RVRHVAGDIRVLESRPMPIRNAEGVVT 176

Query: 429 PQNGIEPEDVDT--------------RINKRKMEIEVMQLCSILEATSDGIAIINREGII 474
               I  +  +                  + + E    +L  + E+  D    ++  G I
Sbjct: 177 GFVDIARDITEQIETERRYQLALAQAHEARERAEASEWRLRLLAESAQDLTVQVDASGKI 236

Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS--LDLRQTLEKITLGS 532
           L  + +  +L G          F   +  +       ++        D R +L+      
Sbjct: 237 LYASSSADRL-GLANLAQEGASFMSLVHPDETERAATFIAGAFESRGDKRPSLDTELRFL 295

Query: 533 TKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
           + +     +         +    +    T  D+++    +  L  A+  AE     KS F
Sbjct: 296 SVDGDYRWMEGKGWLERDADGVPVALTSTFRDMTDRHSLEESLIAARVRAEAAVRAKSAF 355

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
           LA ++HE+RTPLT++IGF+E I+ +   P  +P     ++ I   G  +L  +ND+LD S
Sbjct: 356 LANMTHELRTPLTSVIGFAEQIQAE---PALSPTVRHASDRISAGGRALLSTINDILDFS 412

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA-DLRSVKQI 707
           K+ESG +++      ++  ++E ++L+ + A+ K + +    +  +    A D + V+Q+
Sbjct: 413 KLESGGVSIVTAATEVNGLIAETVALLSVQADRKGLSLSYDGSAVLGLCAALDSQHVRQV 472

Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
            LN++ NAI FT  GG + ++     +  + + V DTG+G+    LE+    F Q+ ++ 
Sbjct: 473 LLNLIGNAIKFTEQGG-VTVTAQRNDDGMLEIAVADTGIGIAEDHLERLFGRFSQVDDTI 531

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             R  G+GLGL + + + +A  G+  + ST  +G+   +  PL
Sbjct: 532 ARRFGGSGLGLAIGRFLAEAMGGEIQVSSTVGRGSTFTLTLPL 574



 Score = 64.7 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 30/252 (11%), Positives = 64/252 (25%), Gaps = 24/252 (9%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH-IDPNNHIGDLLKRQNTWYGKTT 148
           D  G L  +S    + IG    +  G R  D            +  DLL+       +  
Sbjct: 89  DLTGRLLRVSPAWSRIIGGSVAEAAGRRTWDFIAPEDHPAVAAYYADLLREGAAPSSRLR 148

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVD--------------NDPR 194
           +           ++   +PI +     +GF    I                     ++ R
Sbjct: 149 MRVRHVAGDIRVLESRPMPIRNAEGVVTGF--VDIARDITEQIETERRYQLALAQAHEAR 206

Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV-------SSLTEYY 247
              +  + +   L E  +  +        I    S    L + N         S +    
Sbjct: 207 ERAEASEWRLRLLAESAQDLTVQVDASGKILYASSSADRLGLANLAQEGASFMSLVHPDE 266

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
             +        +     +  SL  +  F +++ +    +      ++         S   
Sbjct: 267 TERAATFIAGAFESRGDKRPSLDTELRFLSVDGDYRWMEGKGWLERDADGVPVALTSTFR 326

Query: 308 HPSLSAYFDEGE 319
             +     +E  
Sbjct: 327 DMTDRHSLEESL 338


>gi|255535913|ref|YP_003096284.1| PAS/PAC domain protein [Flavobacteriaceae bacterium 3519-10]
 gi|255342109|gb|ACU08222.1| PAS/PAC domain protein [Flavobacteriaceae bacterium 3519-10]
          Length = 1298

 Score =  340 bits (871), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 125/732 (17%), Positives = 260/732 (35%), Gaps = 36/732 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D +  +K ++     T G  +   +G    ++        +     L+     ++    
Sbjct: 183 LDNNFNVKTVNTAFENTYGTSSEA-LGKNFREILSRGGNPVSLSEDHLMDAGEYFFTSRL 241

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                G+   + I+      ++R         F            +   +R +++F    
Sbjct: 242 N---SGSGETMVIEWLIKRNHNRT------EIFCFGRNVTRLIAEKQKLERSERRFRSFF 292

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHL----RMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
           E   G  S+   + +I +              + +  +L +     +  L       +  
Sbjct: 293 ENAIGLMSMHDMEGNILAVNEKGRETLKYSAEETQKLNLRDLVPKDNWQLLQGYLERIAE 352

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE--GENLT 322
            +                         +  N +      +      +S   D    + + 
Sbjct: 353 YKEDSGYMMLCAKDGEQLVWMYHNLVEIDENGRPYVVSTALNVTEKMSLEKDLIYTKKIL 412

Query: 323 PETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
            +T     +  + V       + + +   + K     + E+A  L    +    S     
Sbjct: 413 EQTSAAARVGGWEVNLQNGKTFWSQTTKEIHKVADDFEPELASALDFYTEE---SRERVS 469

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
                             L        + + +  I   +           GI       +
Sbjct: 470 ALFDRAVKTGERYDDEFELSQ---PDGSRIWVRAIGIPEFEHGVC-KKVFGIIQNIDIAK 525

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
               ++E +   L S ++     +A+ +     LS ++  +  F   V  +  +      
Sbjct: 526 RTYLELEKKEAMLQSFVKDVPVAVAMFDHNLNYLSVSKWWTDEFSMDVNAMKGRNIFEVS 585

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMH 559
                  +  Y+  +     +     + +    + +  ++ +    L         +++ 
Sbjct: 586 PNVPEERVKMYMGALQGKSYKSENLVLPVPGKTQVQHYNMEVSPWFLANKVIGGVIVSVQ 645

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           +I+E  +   +L +A+++A + S  KS+FLA +SHEIRTPL  +IGFS+++         
Sbjct: 646 NITERVRTTVELKNAQQLAVRASKAKSEFLANMSHEIRTPLNGVIGFSDLLLKTPL---- 701

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
           N    +Y NYI+ SG  +L I+ND+LD SKIESGKM L  +   + + V + I+++   +
Sbjct: 702 NEMQTQYLNYINESGESLLTIINDILDFSKIESGKMELMIDRTPVYDMVGQVINVILFQS 761

Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTH----TSN 734
            +K + +  +    +P IL  D   VKQI +N+L NA+ FT  G +I +           
Sbjct: 762 QKKDLELLLNIEPGLPEILFLDESRVKQILINLLGNAVKFTLRG-EIELKVQKLRMDAER 820

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
             +   VRDTG+G+   + ++    F Q  +S   +  GTGLGL ++  ++        +
Sbjct: 821 IALRFAVRDTGIGIPKDKQKRIFDAFTQEDSSVSKKYGGTGLGLTISNNILKYMGTSLSL 880

Query: 795 FSTPAKGTLIEI 806
            STP +G+    
Sbjct: 881 KSTPGEGSEFYF 892



 Score = 43.9 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 20/165 (12%), Positives = 57/165 (34%), Gaps = 5/165 (3%)

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG 472
           +  I ++      E +       E V  ++  ++          +   T++ I +++   
Sbjct: 128 LCVIDYKPRTLSDEQIAALSKLAEAVSRQLMAKRKAAHAEYYEQLFTVTNNLICVLDNNF 187

Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
            + + N A    +G    + L K F   L +    V       + + +        +  +
Sbjct: 188 NVKTVNTAFENTYGTSS-EALGKNFREILSRGGNPVSLSEDHLMDAGE----YFFTSRLN 242

Query: 533 TKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI 577
           +   + + +  +IK+    +       +++    EK KL  +++ 
Sbjct: 243 SGSGETMVIEWLIKRNHNRTEIFCFGRNVTRLIAEKQKLERSERR 287


>gi|330881741|gb|EGH15890.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. glycinea str. race 4]
          Length = 554

 Score =  340 bits (871), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 106/383 (27%), Positives = 186/383 (48%), Gaps = 18/383 (4%)

Query: 441 RINKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
              +R +     +L  I+E   D GI  ++R G + + N    ++ GY  ++I+ K F+V
Sbjct: 34  AERERALRDNEERLRLIIEGVKDYGIFALDRNGYVTTWNAGAERIKGYTEQEIIGKHFSV 93

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYS 555
           F               +    +     + +    K+       ++I            +S
Sbjct: 94  FYLPEECPQHPDM--ALREATVNGRYTEESWRRRKDGSRFWASVVITAQYDGNDELRGFS 151

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
               DIS+ +  +  L  A++ AE+ S  KS+FL+R+SHE+RTPL +I+GF++++     
Sbjct: 152 KITRDISDRRVAEIALGTAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLL----- 206

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
                        +I R+G  +L ++N++LDI++IE+G ++L  EPVSL   + EA+ LV
Sbjct: 207 DMDSPASQRPQIGHILRAGQHLLKLINEVLDIARIEAGHVSLSLEPVSLSSVLEEALVLV 266

Query: 676 QLYANEKRILIRT--SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
              A +  I ++      + +  ++AD + + Q+ LN+LSNAI +    GQ+ I    + 
Sbjct: 267 SPMAADANIELKALPQLPDKLG-VVADRQRLIQVLLNLLSNAIKYNRPEGQVRIEVEQSD 325

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
              V + V DTG G+    + +  KPF ++        EGTGLGL L+K+M++   G   
Sbjct: 326 E-RVTVSVIDTGYGIAPERIGQLFKPFERLDA--NPSVEGTGLGLALSKSMLEMMHGTLS 382

Query: 794 IFSTPAKGTLIEIIFPLYDTSHP 816
           + +TPA+G    +  PL     P
Sbjct: 383 VQNTPAEGCRFILELPLVLVHAP 405



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/259 (9%), Positives = 69/259 (26%), Gaps = 20/259 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH--IDPNNHIGDLLKRQNTW 143
            + +D +GY+   +    +  G    ++IG               P+  + +       +
Sbjct: 59  IFALDRNGYVTTWNAGAERIKGYTEQEIIGKHFSVFYLPEECPQHPDMALREATVNGR-Y 117

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGF---------RGFGIVHVNRVDNDPR 194
             ++     +G+  +  + + A   Y  N E  GF         R    + +     +  
Sbjct: 118 TEESWRRRKDGSRFWASVVITAQ--YDGNDELRGFSKITRDISDRRVAEIALGTAREEAE 175

Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254
              +   +  S +    +   +       +    SP         +    ++      + 
Sbjct: 176 RASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSPASQRPQIGHILRAGQHLLKL--IN 233

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
           +      + +   SL  +    +  L     +         +  + E  +    P     
Sbjct: 234 EVLDIARIEAGHVSLSLEPVSLSSVLE----EALVLVSPMAADANIELKALPQLPDKLGV 289

Query: 315 FDEGENLTPETVDKCPIPF 333
             + + L    ++      
Sbjct: 290 VADRQRLIQVLLNLLSNAI 308


>gi|302392020|ref|YP_003827840.1| multi-sensor signal transduction histidine kinase [Acetohalobium
           arabaticum DSM 5501]
 gi|302204097|gb|ADL12775.1| multi-sensor signal transduction histidine kinase [Acetohalobium
           arabaticum DSM 5501]
          Length = 723

 Score =  340 bits (871), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 103/510 (20%), Positives = 212/510 (41%), Gaps = 29/510 (5%)

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEI 362
                        E E      +D  P   F + S G     N +   L+ Y   + +  
Sbjct: 202 DITERKKTEQTLKESEAKFRSYIDNAPYGVFVINSRGEYIEVNEAACELSGYSKEELL-- 259

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
              +  +    + +  + ++ +            S  +  ++ +     A         N
Sbjct: 260 NMSIEDVTVDRQKAKRHLVQLL-------EVGELSLEIMLLKKDGSKFHANINAVKASEN 312

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
           +        G   +    +  + K++ E  +L    + T   +  ++R G +   NR   
Sbjct: 313 RL------LGFVEDITARKEAEEKVKEERDKLQKYFDITEVIVVNLDRTGKVELLNRKGC 366

Query: 483 KLFGYPVEDILRKPF-TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
           ++ G   E++L   +   F+++   +     +  +L  ++     +I   S +E K+L  
Sbjct: 367 EILGVKEEEVLGHDWTENFVKEEDSAETKQIINSLLEGEIINDKNRIITKSGEERKILWH 426

Query: 542 RIIIKKLPFS-SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
             ++K      +    T  DI+E +  K K+++        +  K +F A +SHE RTPL
Sbjct: 427 NAVLKDEQSQMNKILSTGIDITEVESLKEKVAY--------NKLKMEFFANISHEFRTPL 478

Query: 601 TAIIGFSEVIK--NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
             I    ++++   ++  P  + +  +Y   I ++G  +L + N+L+DI+K++SG   L 
Sbjct: 479 NLIFSAQQMLEMYQKKLEPEQSSKMGKYTTIIKQNGRRLLRLANNLIDITKMDSGSFELE 538

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718
            E  ++   V +    V  +   K +            I  D  +++++ LN+LSNA+ F
Sbjct: 539 LENCNIVSLVRKVACSVAEHIEYKELEFEFDSEIEEKIIACDPFNIERVILNLLSNAVKF 598

Query: 719 TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
           T  G ++ ++  +T   +V++ V+DTG+G++  + E   K FGQ   S     EGTG+GL
Sbjct: 599 TDIGDKVSVNI-YTEEGKVLISVKDTGIGISQEKQELIFKRFGQADKSFTRSNEGTGIGL 657

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            + K++V+ + G+  + S    G+   I  
Sbjct: 658 SIVKSIVELHNGQISVESEEGVGSEFIIEL 687



 Score = 97.8 bits (242), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 33/281 (11%), Positives = 83/281 (29%), Gaps = 35/281 (12%)

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
             S      ++   + +      F + +  G +  AN S+  +  Y   + +E+      
Sbjct: 85  EQSLELTMEKDKLNKILYTTMDGFLILNTEGEIIEANKSYQEMIGYSREELLEMTIDDID 144

Query: 369 LLDAPKLSDNNAIKPVM---------LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
           +    +   ++  + +              +   I        I    E           
Sbjct: 145 ITKNKEEVKDHMERIMTDEQDRFETKCSCKNGEVIDVEVSTTYIDDLEEPIFV------- 197

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
                         + +  + +  ++ ++    +  S ++    G+ +IN  G  +  N 
Sbjct: 198 ------------SFDRDITERKKTEQTLKESEAKFRSYIDNAPYGVFVINSRGEYIEVNE 245

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
           A  +L GY  E++L                  +L ++L +          +   K+    
Sbjct: 246 AACELSGYSKEELLNMSIEDV--TVDRQKAKRHLVQLLEVGELSL---EIMLLKKDGSKF 300

Query: 540 SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
              I   K    +     + DI+  K+ + K+   +   +K
Sbjct: 301 HANINAVKA-SENRLLGFVEDITARKEAEEKVKEERDKLQK 340



 Score = 83.5 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 56/137 (40%), Gaps = 5/137 (3%)

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
               +    ++ +E  +L  IL  T DG  I+N EG I+  N++  ++ GY  E++L   
Sbjct: 80  RERLKEQSLELTMEKDKLNKILYTTMDGFLILNTEGEIIEANKSYQEMIGYSREELLEMT 139

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF--SSCY 554
                       +  ++  I++ +  +     T  S K  +++ + +    +       +
Sbjct: 140 IDDIDITKNKEEVKDHMERIMTDEQDR---FETKCSCKNGEVIDVEVSTTYIDDLEEPIF 196

Query: 555 SLTMHDISEWKQEKNKL 571
                DI+E K+ +  L
Sbjct: 197 VSFDRDITERKKTEQTL 213



 Score = 70.4 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/352 (9%), Positives = 89/352 (25%), Gaps = 14/352 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ++  G + E ++   + IG    +++ M + D+    + +      + +        +T 
Sbjct: 111 LNTEGEIIEANKSYQEMIGYSREELLEMTIDDIDITKNKEEVKDHMERIMTDEQDRFETK 170

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                G    + ++++    Y  + E   F  F                K  + KF    
Sbjct: 171 CSCKNGE--VIDVEVSTT--YIDDLEEPIFVSFD--RDITERKKTEQTLKESEAKFRSYI 224

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           +       V   + +          L   +K   L           +  K  L+   E  
Sbjct: 225 DNAPYGVFVINSRGEYIEVNEAACELSGYSKEELLNMSIEDVTVDRQKAKRHLVQLLEVG 284

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
               E                    + ++                   E  +   +  D 
Sbjct: 285 ELSLEIMLLKKDGSKFHANINAVKASENRLLGFVEDITARKEAEEKVKEERDKLQKYFDI 344

Query: 329 CPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
             +    +   G +   N     +   K  + +      + +    K  D+   K ++  
Sbjct: 345 TEVIVVNLDRTGKVELLNRKGCEILGVKEEEVLGHDWTENFV----KEEDSAETKQIINS 400

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
             +   I    R+  I  + E    +        ++  +         +  +
Sbjct: 401 LLEGEIINDKNRI--ITKSGEERKILWHNAV-LKDEQSQMNKILSTGIDITE 449



 Score = 46.9 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 36/280 (12%), Positives = 86/280 (30%), Gaps = 20/280 (7%)

Query: 42  ENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEE 101
           E P   SF++    D  +   +     +SE  F            + I++ G   E++E 
Sbjct: 192 EEPIFVSFDR----DITERKKTEQTLKESEAKFRSYIDNAPYG-VFVINSRGEYIEVNEA 246

Query: 102 LPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPI 161
             +  G    +++ M + DV  +       H+  LL+       +  L   +G+  +   
Sbjct: 247 ACELSGYSKEELLNMSIEDV-TVDRQKAKRHLVQLLEVGE-LSLEIMLLKKDGSKFH--- 301

Query: 162 DLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEK 221
                 + +      GF     V       +     K    K     +I +         
Sbjct: 302 -ANINAVKASENRLLGF-----VEDITARKEAEEKVKEERDKLQKYFDITEVIVVNLDRT 355

Query: 222 Y--DIFSQQSPPPHLRMKNKVSSLTEYY--AHKDDVLKTEKYPLLTSEESSLPEQEDFHT 277
              ++ +++        + +V           ++D  +T++      E   + ++    T
Sbjct: 356 GKVELLNRKGCEILGVKEEEVLGHDWTENFVKEEDSAETKQIINSLLEGEIINDKNRIIT 415

Query: 278 INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
            +  +     +   L++   +  + LS     +      E
Sbjct: 416 KSGEERKILWHNAVLKDEQSQMNKILSTGIDITEVESLKE 455


>gi|301100834|ref|XP_002899506.1| hybrid signal transduction histidine kinase, putative [Phytophthora
            infestans T30-4]
 gi|262103814|gb|EEY61866.1| hybrid signal transduction histidine kinase, putative [Phytophthora
            infestans T30-4]
          Length = 4070

 Score =  340 bits (871), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 127/740 (17%), Positives = 254/740 (34%), Gaps = 63/740 (8%)

Query: 86   TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRL-CDVSDILHIDPNNHIGD-LLKRQNTW 143
             + +D +G +   + +  +T      +++G  L  +     +  P   + +   +   T 
Sbjct: 2757 IFGVDINGRVNIWNRKAAETTQYTNAEVLGKDLVAEFISNEYKMPVRSVLEKAFEGIETA 2816

Query: 144  YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
              +  L    G    V I L A P Y+ + E  G  G G                RL   
Sbjct: 2817 NFEFPLITKAGR--RVEILLNATPRYNEHGEVMGMVGIG--QDITERIAQEQEYTRLIDT 2872

Query: 204  FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
             +           +         + +       ++ +          ++     +  L  
Sbjct: 2873 ANAPIF----GVDINGHVNIWNRKAAHIMQYTNEDVLGKDLVAEFISEEYKVPVRSVLEK 2928

Query: 264  SEESSLPEQEDFHTINLNQYTKK--QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
            + E       +F  I       +         N   E    +      +     ++    
Sbjct: 2929 AFEGVETANFEFPLITKAGRRVEILLNATPRYNEHGEVKGMVGIGQDITERIAQEQE--- 2985

Query: 322  TPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
                +D    P F       +   N     +T Y   + +     L     +P+     A
Sbjct: 2986 YSRLIDTANAPIFGVDANMCVNIWNRKAAQITNYSIGEVMGEN--LVETFISPEFRPIVA 3043

Query: 381  IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
                +L ++      A+     I         +      + +     +   GI  +  D 
Sbjct: 3044 E---VLSQALTGVETANFEFPLITRPGTRIEIL-LNATPRYDLNGNIVGVVGIGQDITDR 3099

Query: 441  RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
                  +  E      +++  +  I  I+  G I   N+ + ++ GY   ++L       
Sbjct: 3100 ------IAQEHEYFR-LIDTANAPIFGIDNNGRINEWNQKIEEITGYHKSNVLGLSLVHT 3152

Query: 501  LE-QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYS 555
                +    +   L + L        E     +TK    L L +                
Sbjct: 3153 FVTPDCRQQVRQLLNQALIG--IDVGEMELPMTTKRGVFLLLLVNASSKKDMHGNIRGVI 3210

Query: 556  LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
                D +  K  +              + K +FLA  SHE+RTPL  ++G  E++K Q  
Sbjct: 3211 GVGQDYTARKHME--------------AAKVNFLASFSHELRTPLNGVLGMLELLKEQPL 3256

Query: 616  GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
                +     Y +    SG+L+L+++ND+LD+SKIE+G + +   P  + + +  +I + 
Sbjct: 3257 ----DKSIERYVHMAYVSGSLLLNLINDILDLSKIEAGHLEISTAPFQMHDLLDYSIEIF 3312

Query: 676  QLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
            +  A E+ + +     +N+P+ ++ D+  ++Q+ LN+LSNAI FT  G  I ++ +   +
Sbjct: 3313 KFKAKERGLKLELKCGDNVPKAVIGDVVRLRQVLLNLLSNAIKFTNEGS-ITVACSVVHS 3371

Query: 735  EEV-------ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
             E+       + +V DTG+GM   E  +    F ++  ++Q    G+GLGL + K + + 
Sbjct: 3372 PELPPQFKKLLFQVIDTGIGMDAEEKMRLFSLFTKLERTRQNNPTGSGLGLAICKQLAEL 3431

Query: 788  NMGKFYIFSTPAKGTLIEII 807
              G   + S    G+     
Sbjct: 3432 MDGSIDVDSELGVGSNFFFT 3451



 Score =  147 bits (371), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 61/505 (12%), Positives = 138/505 (27%), Gaps = 36/505 (7%)

Query: 86   TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCD--VSDILHIDPNNHIGDLLKRQNTW 143
             + +D  G +   + +    +      ++G  L +  +S+   +   + +    +   T 
Sbjct: 1317 IFGVDTDGRVNIWNRKAADIMQYTNEDVLGKNLVEQFISEEYRVAVRSVLEKAFEGVETA 1376

Query: 144  YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
              +  L    G    V I L A P Y+   E  G  G G                RL   
Sbjct: 1377 NFEFPLITRAGR--RVEILLNATPRYNERGEVMGMVGIG--QDITERIAQEQEYSRLIDT 1432

Query: 204  FSHLHEIKKG----HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
             +            +    K  + +           +  +  S       +  + K  + 
Sbjct: 1433 ANAPIFGVDINGRVNIWNRKAAHIMQYTNEDVLDKDLVAEFISEEYKVPVRSVLEKAFEG 1492

Query: 260  PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
                + E  L       T    +           N   E    +      +     ++  
Sbjct: 1493 VETANFEFPL------ITKAGRRVEILLNATPRYNEHGEVMGMVGIGQDITERIAQEQE- 1545

Query: 320  NLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
                  +D    P F V  +G++   N     + +Y + D +        + +  K+   
Sbjct: 1546 --YTRLIDTANAPIFGVDINGHVNIWNRKAAHIMQYTNEDVLGKDLVAEFISNEYKVPVR 1603

Query: 379  NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
            +      L ++      A+     I         +      + N+  E M   GI  +  
Sbjct: 1604 SV-----LEKAFEGIETANFEFPLITKAGRRVEIL-LNATPRYNERGEVMGMVGIGQDIT 1657

Query: 439  DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF- 497
            +          +  +   +++  +  I  ++  G +   NR  + +  Y  ED+L K   
Sbjct: 1658 ERI-------AQEEEYSRLIDTANAPIFGVDINGRVNIWNRKAADIMQYTNEDVLGKDLV 1710

Query: 498  TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYS 555
              F+ +     +   L +          E   +        + L    +           
Sbjct: 1711 AEFISKEYKVPVRSVLEKAFEGVETANFEFPLITRAGRRVEILLNATPRYNERGEVMGMV 1770

Query: 556  LTMHDISEWKQEKNKLSHAKKIAEK 580
                DI++   ++ + +     A  
Sbjct: 1771 GIGQDITDRIAQEQEYTRLIDSANA 1795



 Score =  143 bits (360), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 64/506 (12%), Positives = 143/506 (28%), Gaps = 38/506 (7%)

Query: 86   TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRL-CDVSDILHIDPNNHIGD-LLKRQNTW 143
             + +D +G +   + +  +T      +++G  L  +     +  P   + +   +   T 
Sbjct: 1917 IFGVDINGRVNIWNRKAAETTQYTNAEVLGKDLVAEFISKEYKVPVRSVLEKAFEGVETA 1976

Query: 144  YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
              +  L    G    V I L A P Y+ + E  G  G G                RL   
Sbjct: 1977 NFEFPLITKAGR--RVEILLNATPRYNEHGEVMGMVGIG--QDITERIAQEQEYTRLIDT 2032

Query: 204  FSHL---HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
             +      +I    +   ++  DI            ++ +          ++     +  
Sbjct: 2033 ANAPIFGVDINGHVNIWNRKAADIMQ-------YSNEDVLGKDLVVEFISNEYKVPVRSV 2085

Query: 261  LLTSEESSLPEQEDFHTINLNQYTKK--QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
            L  + E       +F  I       +         N   E    +      +     ++ 
Sbjct: 2086 LEKAFEGIETANFEFPLITKAGRRVEILLNATPRYNERGEVMGMVGIGQDITERIAQEQE 2145

Query: 319  ENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
                   +D    P F V  +G++   N     + +Y + D +        + +  K+  
Sbjct: 2146 ---YSRLIDTANAPIFGVDINGHVNIWNRKAAHIMQYTNEDVLGKDLVAEFISNEYKVPV 2202

Query: 378  NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
             +      L ++      A+     I         +      + N+  E     GI  + 
Sbjct: 2203 RSV-----LEKAFEGVETANFEFPLITKAGRRVEIL-LNATPRYNEHGEVKGMVGIGQDI 2256

Query: 438  VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
             +          +  +   +++  +  I  ++  G +   NR  + +  Y  ED+L K  
Sbjct: 2257 TERI-------AQEQEYSRLIDTANAPIFGVDINGHVNIWNRKAADIMQYTNEDVLGKDL 2309

Query: 498  -TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CY 554
               F+ +     +   L +          E   +        + L    +          
Sbjct: 2310 VAEFISKEYKVPVRSVLEKAFEGIETANFEFPLITKAGRRVEILLNATPRYNERGEVMGM 2369

Query: 555  SLTMHDISEWKQEKNKLSHAKKIAEK 580
                 DI+E   ++ + S     A  
Sbjct: 2370 VGIGQDITERIAQEEEYSRLIDTANA 2395



 Score =  140 bits (353), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 63/501 (12%), Positives = 136/501 (27%), Gaps = 28/501 (5%)

Query: 86   TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRL-CDVSDILHIDPNNHIGD-LLKRQNTW 143
             + +D +G +   + +  +T      +++G  L  +     +  P   + +   +   T 
Sbjct: 760  IFGVDINGRVNIWNRKAAETTQYTNAEVLGKDLVAEFISEEYKVPVRSVLEKAFQDVETA 819

Query: 144  YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
              +  L    G    V I L A P Y+   +  G  G G      V         R+   
Sbjct: 820  NFEFPLITKAGR--RVEILLNATPRYNEQGQVMGMVGIG--QDITVRMAQEKEKNRMIHS 875

Query: 204  FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
             +           V      +           M   + +      H+D+V    +  L  
Sbjct: 876  ANAPIFGVDQDGLVNIWNLKVAEITQFSSEEVMGQDLVNRFVAEDHRDEVNFNLRKAL-- 933

Query: 264  SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
              + +        T    +           +   + F         +     ++      
Sbjct: 934  EGKPTGNFDFPLITKTGRRVEILLNATPRYDELGQIFGVTGIGQDITERIAQEQE---YI 990

Query: 324  ETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
              +D    P F V S G +   N     + +Y +   +        L++     D     
Sbjct: 991  RLIDTANAPIFGVNSEGRVNIWNKKAASIMQYTTDAVMGEK-----LVEKYITKDYQEAV 1045

Query: 383  PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
              +L  +      A+     I         +      + N+    +   GI  +  D   
Sbjct: 1046 SNVLSEALNGVETANFEFPLITKAGRRVEIL-LNATPRYNEHGAVIGMVGIGQDITDRI- 1103

Query: 443  NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF-TVFL 501
                   +  +   +++  +  I  ++  G +   NR  + +  Y  ED+L K     F+
Sbjct: 1104 ------AQEQEYTRLIDTANAPIFGVDINGRVNIWNRKAADIMQYTNEDVLGKDLVAEFI 1157

Query: 502  EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMH 559
             +     +   L +          E   +        + L    +               
Sbjct: 1158 SEEYKVPVRSVLEKAFEGIETANFEFPLITKAGRRVEILLNATPRYNERGEVMGMVGIGQ 1217

Query: 560  DISEWKQEKNKLSHAKKIAEK 580
            DI+E   ++ + S     A  
Sbjct: 1218 DITERIAQEEEYSRLIDTANA 1238



 Score =  139 bits (349), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 56/504 (11%), Positives = 135/504 (26%), Gaps = 34/504 (6%)

Query: 86   TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRL-CDVSDILHIDPNNHIGD-LLKRQNTW 143
             + +D +G +   + +    +      ++   L  +     +  P   + +   +   T 
Sbjct: 1437 IFGVDINGRVNIWNRKAAHIMQYTNEDVLDKDLVAEFISEEYKVPVRSVLEKAFEGVETA 1496

Query: 144  YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
              +  L    G    V I L A P Y+ + E  G  G G                RL   
Sbjct: 1497 NFEFPLITKAGR--RVEILLNATPRYNEHGEVMGMVGIG--QDITERIAQEQEYTRLIDT 1552

Query: 204  FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
             +           +         + +       ++ +          ++     +  L  
Sbjct: 1553 ANAPIF----GVDINGHVNIWNRKAAHIMQYTNEDVLGKDLVAEFISNEYKVPVRSVLEK 1608

Query: 264  SEESSLPEQEDFHTINLNQYTKK--QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
            + E       +F  I       +         N   E    +      +     +E    
Sbjct: 1609 AFEGIETANFEFPLITKAGRRVEILLNATPRYNERGEVMGMVGIGQDITERIAQEEE--- 1665

Query: 322  TPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
                +D    P F V  +G +   N     + +Y + D +        +    K+   + 
Sbjct: 1666 YSRLIDTANAPIFGVDINGRVNIWNRKAADIMQYTNEDVLGKDLVAEFISKEYKVPVRSV 1725

Query: 381  IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
                 L ++      A+     I         +      + N+  E M   GI  +  D 
Sbjct: 1726 -----LEKAFEGVETANFEFPLITRAGRRVEIL-LNATPRYNERGEVMGMVGIGQDITDR 1779

Query: 441  RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
                     +  +   ++++ +  I  ++  G +   N+  +++  Y   D++ +     
Sbjct: 1780 I-------AQEQEYTRLIDSANAPIFGVDVNGCVNIWNKKAAEITQYTPNDVMGENLVEK 1832

Query: 501  LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSL 556
                        +       + +T        TK  + + + +                 
Sbjct: 1833 FITEDYRKAVGLVLSKALDGV-ETANFEFPLMTKAGRRVEILLNATSRFNEHGEVIGMVG 1891

Query: 557  TMHDISEWKQEKNKLSHAKKIAEK 580
               DI+E   ++ + +     A  
Sbjct: 1892 IGQDITERIAQEQEYTRLIDTANA 1915



 Score =  135 bits (340), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 59/503 (11%), Positives = 135/503 (26%), Gaps = 32/503 (6%)

Query: 86   TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCD--VSDILHIDPNNHIGDLLKRQNTW 143
             + +D +G +   +++  +        ++G  L +  +++         +   L    T 
Sbjct: 1797 IFGVDVNGCVNIWNKKAAEITQYTPNDVMGENLVEKFITEDYRKAVGLVLSKALDGVETA 1856

Query: 144  YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
              +  L    G    V I L A   ++ + E  G  G G                RL   
Sbjct: 1857 NFEFPLMTKAGR--RVEILLNATSRFNEHGEVIGMVGIG--QDITERIAQEQEYTRLIDT 1912

Query: 204  FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
             +           +         + +          +           +     +  L  
Sbjct: 1913 ANAPIF----GVDINGRVNIWNRKAAETTQYTNAEVLGKDLVAEFISKEYKVPVRSVLEK 1968

Query: 264  SEESSLPEQEDFHTINLNQYTKK--QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
            + E       +F  I       +         N   E    +      +     ++    
Sbjct: 1969 AFEGVETANFEFPLITKAGRRVEILLNATPRYNEHGEVMGMVGIGQDITERIAQEQE--- 2025

Query: 322  TPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
                +D    P F V  +G++   N     + +Y + D +     +  + +  K+   + 
Sbjct: 2026 YTRLIDTANAPIFGVDINGHVNIWNRKAADIMQYSNEDVLGKDLVVEFISNEYKVPVRSV 2085

Query: 381  IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
                 L ++      A+     I         +      + N+  E M   GI  +  + 
Sbjct: 2086 -----LEKAFEGIETANFEFPLITKAGRRVEIL-LNATPRYNERGEVMGMVGIGQDITER 2139

Query: 441  RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF-TV 499
                     +  +   +++  +  I  ++  G +   NR  + +  Y  ED+L K     
Sbjct: 2140 I-------AQEQEYSRLIDTANAPIFGVDINGHVNIWNRKAAHIMQYTNEDVLGKDLVAE 2192

Query: 500  FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLT 557
            F+       +   L +          E   +        + L    +             
Sbjct: 2193 FISNEYKVPVRSVLEKAFEGVETANFEFPLITKAGRRVEILLNATPRYNEHGEVKGMVGI 2252

Query: 558  MHDISEWKQEKNKLSHAKKIAEK 580
              DI+E   ++ + S     A  
Sbjct: 2253 GQDITERIAQEQEYSRLIDTANA 2275



 Score =  131 bits (330), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 53/506 (10%), Positives = 135/506 (26%), Gaps = 38/506 (7%)

Query: 86   TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRL-CDVSDILHIDPNNHIGD-LLKRQNTW 143
             + +D +G++   + +    +      ++G  L  +     +  P   + +   +   T 
Sbjct: 2277 IFGVDINGHVNIWNRKAADIMQYTNEDVLGKDLVAEFISKEYKVPVRSVLEKAFEGIETA 2336

Query: 144  YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
              +  L    G    V I L A P Y+   E  G  G G                RL   
Sbjct: 2337 NFEFPLITKAGR--RVEILLNATPRYNERGEVMGMVGIG--QDITERIAQEEEYSRLIDT 2392

Query: 204  FSHLHEIKKGH----SSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
             +        +        K    +           +  +  S       +  + K  + 
Sbjct: 2393 ANAPIFGVDINGCVNIWNRKAADIMQYTNEDVLGKDLVAEFISKEYKEPVRSVLEKAFEG 2452

Query: 260  PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
                + E  L       T    +           N   +    +      +     ++  
Sbjct: 2453 VETANFEFPL------ITKAGRRVEILLNATPRYNERGDVMGMVGIGQDITERIAQEQE- 2505

Query: 320  NLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
                  +D    P F V ++  +   N     +T + S + +     + T++        
Sbjct: 2506 --YSRLIDTANAPIFGVDTNMRINIFNRKAQQITNFSSEELVGEMY-VETIISQEF--KA 2560

Query: 379  NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
                 +          +    L T        + +      + +Q  + +   GI  +  
Sbjct: 2561 VTYDIMCKALQGNETASFELALTTKT---GRKVNILLNATARFDQHGQIVGVVGIGQDIT 2617

Query: 439  DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
            D          +  +   ++++ +  I  ++  G +   N+  +++  Y   D++ +   
Sbjct: 2618 DRI-------AQEQEYTRLIDSANAPIFGVDVNGCVNIWNKKAAEITQYTPNDVMGENLV 2670

Query: 499  VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK----KLPFSSCY 554
                          +         +T        TK  + + + +       ++      
Sbjct: 2671 EKFITEDYREAVGLVFSKACEGT-ETANFEFPLMTKAGRRVEILLNATSRFNEIGEVMGV 2729

Query: 555  SLTMHDISEWKQEKNKLSHAKKIAEK 580
                 DI+E   ++ + +     A  
Sbjct: 2730 VGIGQDITERIAQEQEYTRLIDTANA 2755



 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 58/505 (11%), Positives = 135/505 (26%), Gaps = 36/505 (7%)

Query: 86   TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRL-CDVSDILHIDPNNHIGD-LLKRQNTW 143
             + +D +G +   + +    +      ++G  L  +     + +P   + +   +   T 
Sbjct: 2397 IFGVDINGCVNIWNRKAADIMQYTNEDVLGKDLVAEFISKEYKEPVRSVLEKAFEGVETA 2456

Query: 144  YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
              +  L    G    V I L A P Y+   +  G  G G                RL   
Sbjct: 2457 NFEFPLITKAGR--RVEILLNATPRYNERGDVMGMVGIG--QDITERIAQEQEYSRLIDT 2512

Query: 204  FSHLHEIKKGHSSVE----KEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
             +        +  +     K +                  + S        D + K  + 
Sbjct: 2513 ANAPIFGVDTNMRINIFNRKAQQITNFSSEELVGEMYVETIISQEFKAVTYDIMCKALQG 2572

Query: 260  PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
                S E +L  +         +           +   +    +      +     ++  
Sbjct: 2573 NETASFELALTTKT------GRKVNILLNATARFDQHGQIVGVVGIGQDITDRIAQEQE- 2625

Query: 320  NLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
                  +D    P F V  +G +   N     +T+Y   D +        L++     D 
Sbjct: 2626 --YTRLIDSANAPIFGVDVNGCVNIWNKKAAEITQYTPNDVMGEN-----LVEKFITEDY 2678

Query: 379  NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
                 ++  ++      A+     +         +      + N+  E M   GI  +  
Sbjct: 2679 REAVGLVFSKACEGTETANFEFPLMTKAGRRVEIL-LNATSRFNEIGEVMGVVGIGQDIT 2737

Query: 439  DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF- 497
            +          +  +   +++  +  I  ++  G +   NR  ++   Y   ++L K   
Sbjct: 2738 ERI-------AQEQEYTRLIDTANAPIFGVDINGRVNIWNRKAAETTQYTNAEVLGKDLV 2790

Query: 498  TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYS 555
              F+       +   L +          E   +        + L    +           
Sbjct: 2791 AEFISNEYKMPVRSVLEKAFEGIETANFEFPLITKAGRRVEILLNATPRYNEHGEVMGMV 2850

Query: 556  LTMHDISEWKQEKNKLSHAKKIAEK 580
                DI+E   ++ + +     A  
Sbjct: 2851 GIGQDITERIAQEQEYTRLIDTANA 2875



 Score =  125 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 61/501 (12%), Positives = 133/501 (26%), Gaps = 28/501 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTW 143
            + +D +G +   + +   T      +++G+ L +              + + LK Q T 
Sbjct: 400 IFGVDENGCVNIWNRKAADTTQYSNEEVLGVNLVENFIPDDFQEAVWTVLSEALKGQETA 459

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +  L   +G    V I L A P Y+           GI     V         RL   
Sbjct: 460 NFEFPLITKDGR--RVEILLNATPRYNEKGVVI--GVVGIGQDITVRMAQEKETNRLIHS 515

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
            +           V      +           M   + +      H++ V    +  L  
Sbjct: 516 ANAPIFGVDQDGRVNIWNLKVAEITQFSSQEIMGKDLVNRFVAEDHRESVGLLLRKAL-- 573

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
             E +        T    +           +   + F  +      +     ++      
Sbjct: 574 QGEQTGNFDFPIITKTGRRVEILLNATPRYDELGQIFGVMGIGQDITERIAQEQE---YI 630

Query: 324 ETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
             +D    P F V S G +   N     + +Y +   +        L++     D     
Sbjct: 631 RLIDTANAPIFGVDSEGRVNIWNKKAAEIMQYTTDAVMGEK-----LVEKYITKDYQDAV 685

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             +L  +      A+     I         +      + N+    +   GI  +  D   
Sbjct: 686 RNVLSEALNGVETANFEFPLITKAGRRVEIL-LNATPRYNEHGAVIGMVGIGQDITDRI- 743

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF-TVFL 501
                  +  +   +++  +  I  ++  G +   NR  ++   Y   ++L K     F+
Sbjct: 744 ------AQEQEYMRLIDTANAPIFGVDINGRVNIWNRKAAETTQYTNAEVLGKDLVAEFI 797

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMH 559
            +     +   L +          E   +        + L    +               
Sbjct: 798 SEEYKVPVRSVLEKAFQDVETANFEFPLITKAGRRVEILLNATPRYNEQGQVMGMVGIGQ 857

Query: 560 DISEWKQEKNKLSHAKKIAEK 580
           DI+    ++ + +     A  
Sbjct: 858 DITVRMAQEKEKNRMIHSANA 878



 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 57/526 (10%), Positives = 143/526 (27%), Gaps = 34/526 (6%)

Query: 62  VSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCD- 120
           V+  N  + E   + +         + +D  G +   + +  +       +++G+ L D 
Sbjct: 140 VTERNTKEMEYKKLIETANAP---IFGVDTEGRVVIFNAKAAQISEYAPDEVMGVDLVDT 196

Query: 121 -VSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFR 179
            +S+    +         +   T   +  L    G    V + L A P Y    +  G  
Sbjct: 197 LISEDFRSEVAAVFQRAFQGIETANFEFPLVTKTGR--KVELLLNATPRYDHTGQLVGVV 254

Query: 180 GFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK 239
           G G                RL    +              E      + +       ++ 
Sbjct: 255 GIG--QDITDRIIQEKEYSRLIDTANAPIF----GVDCNCEVIIWNKKAAAITDYTNEDT 308

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL-QNNSKE 298
           +      +  +D      K      E       +        +        T   ++   
Sbjct: 309 IGQKIFKFISEDYRDVVGKVLSKAMEGEGTANFDFPLITKSGRRLDILLNATPKYDHFGN 368

Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSV 357
               +      +     ++        +D    P F V  +G +   N      T+Y + 
Sbjct: 369 ICGAVGIGQDITDRRAQEQE---YTRLIDTANAPIFGVDENGCVNIWNRKAADTTQYSNE 425

Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
           + + +      L++     D       +L  + +    A+     I  +      +    
Sbjct: 426 EVLGVN-----LVENFIPDDFQEAVWTVLSEALKGQETANFEFPLITKDGRRVEIL-LNA 479

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
             + N+    +   GI  +       +++          ++ + +  I  ++++G +   
Sbjct: 480 TPRYNEKGVVIGVVGIGQDITVRMAQEKETNR-------LIHSANAPIFGVDQDGRVNIW 532

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH-YLTEILSLDLRQTLEKITLGSTKEE 536
           N  V+++  +  ++I+ K                  L + L  +     +   +  T   
Sbjct: 533 NLKVAEITQFSSQEIMGKDLVNRFVAEDHRESVGLLLRKALQGEQTGNFDFPIITKTGRR 592

Query: 537 KLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEK 580
             + L    +               DI+E   ++ +       A  
Sbjct: 593 VEILLNATPRYDELGQIFGVMGIGQDITERIAQEQEYIRLIDTANA 638



 Score =  124 bits (312), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 56/456 (12%), Positives = 118/456 (25%), Gaps = 36/456 (7%)

Query: 134  GDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193
            G   +   T   +  L    G    V I L A P Y+   E  G  G G           
Sbjct: 1247 GRAFEGVETANFEFPLITRAGR--RVEILLNATPRYNERGEVMGMVGIG--QDITDRIAQ 1302

Query: 194  RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM---KNKVSSLTEYYAHK 250
                 R       + +              +         +     ++ +          
Sbjct: 1303 EQEHSR-------MIDTANAPIFGVDTDGRVNIWNRKAADIMQYTNEDVLGKNLVEQFIS 1355

Query: 251  DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKK--QYFGTLQNNSKESFEYLSHRNH 308
            ++     +  L  + E       +F  I       +         N   E    +     
Sbjct: 1356 EEYRVAVRSVLEKAFEGVETANFEFPLITRAGRRVEILLNATPRYNERGEVMGMVGIGQD 1415

Query: 309  PSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
             +     ++        +D    P F V  +G +   N     + +Y + D ++      
Sbjct: 1416 ITERIAQEQE---YSRLIDTANAPIFGVDINGRVNIWNRKAAHIMQYTNEDVLDKDLVAE 1472

Query: 368  TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
             + +  K+   +      L ++      A+     I         +      + N+  E 
Sbjct: 1473 FISEEYKVPVRSV-----LEKAFEGVETANFEFPLITKAGRRVEIL-LNATPRYNEHGEV 1526

Query: 428  MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
            M   GI  +  +          +  +   +++  +  I  ++  G +   NR  + +  Y
Sbjct: 1527 MGMVGIGQDITERI-------AQEQEYTRLIDTANAPIFGVDINGHVNIWNRKAAHIMQY 1579

Query: 488  PVEDILRKPF-TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
              ED+L K     F+       +   L +          E   +        + L    +
Sbjct: 1580 TNEDVLGKDLVAEFISNEYKVPVRSVLEKAFEGIETANFEFPLITKAGRRVEILLNATPR 1639

Query: 547  KLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEK 580
                           DI+E   ++ + S     A  
Sbjct: 1640 YNERGEVMGMVGIGQDITERIAQEEEYSRLIDTANA 1675



 Score =  112 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 58/499 (11%), Positives = 126/499 (25%), Gaps = 30/499 (6%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
            +D  G +   + +     G  +  M+G  L  V D       +   +            
Sbjct: 44  ELDKEGNITVWNSKTESMTGYASVDMLGEPLLPVVDESFRKIVSEKIEQALSGIAGADFE 103

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
               +      V I L   P +       G    G        N      K+L +  +  
Sbjct: 104 LPL-VTARGSRVEIVLCLTPRFDTLGSVMGVVAIG--QDVTERNTKEMEYKKLIETANAP 160

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
                    V              P   M   +         + +V    +      E +
Sbjct: 161 IFGVDTEGRVVIFNAKAAQISEYAPDEVMGVDLVDTLISEDFRSEVAAVFQRAFQGIETA 220

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
           +        T    +           +++ +    +      +     ++        +D
Sbjct: 221 NFEFPLVTKTGRKVELLLNA--TPRYDHTGQLVGVVGIGQDITDRIIQEKE---YSRLID 275

Query: 328 KCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
               P F       +   N     +T Y + D I           +    D       +L
Sbjct: 276 TANAPIFGVDCNCEVIIWNKKAAAITDYTNEDTIGQKIFK---FISEDYRDVVGK---VL 329

Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
            ++      A+     I  +    L +      K + F       GI  +  D R     
Sbjct: 330 SKAMEGEGTANFDFPLITKSGRR-LDILLNATPKYDHFGNICGAVGIGQDITDRR----- 383

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT- 505
              +  +   +++  +  I  ++  G +   NR  +    Y  E++L          +  
Sbjct: 384 --AQEQEYTRLIDTANAPIFGVDENGCVNIWNRKAADTTQYSNEEVLGVNLVENFIPDDF 441

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDI 561
              +   L+E L    ++T        TK+ + + + +                    DI
Sbjct: 442 QEAVWTVLSEALKG--QETANFEFPLITKDGRRVEILLNATPRYNEKGVVIGVVGIGQDI 499

Query: 562 SEWKQEKNKLSHAKKIAEK 580
           +    ++ + +     A  
Sbjct: 500 TVRMAQEKETNRLIHSANA 518



 Score = 65.0 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 21/165 (12%), Positives = 58/165 (35%), Gaps = 9/165 (5%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
                +    +   G+  +  +  I ++       Q  +++   +  I  +++EG I   
Sbjct: 2   TPLLAEDGTCVGVYGVGQDVTEWAIQEK-------QYATVMMQANAPIIELDKEGNITVW 54

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
           N     + GY   D+L +P    ++++   +++  + + LS       E   + +     
Sbjct: 55  NSKTESMTGYASVDMLGEPLLPVVDESFRKIVSEKIEQALSGIAGADFELPLVTARGSRV 114

Query: 538 LLSLRIIIK--KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
            + L +  +   L           D++E   ++ +     + A  
Sbjct: 115 EIVLCLTPRFDTLGSVMGVVAIGQDVTERNTKEMEYKKLIETANA 159


>gi|332686790|ref|YP_004456564.1| two-component sensor kinase [Melissococcus plutonius ATCC 35311]
 gi|332370799|dbj|BAK21755.1| two-component sensor kinase [Melissococcus plutonius ATCC 35311]
          Length = 608

 Score =  340 bits (871), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 84/393 (21%), Positives = 169/393 (43%), Gaps = 28/393 (7%)

Query: 423 QFPENMPQNGIEPEDVDTRINKRK-MEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
              E         +  +     ++ ME E  +L S+L   +DG+   +R G IL+ N   
Sbjct: 228 GKDELGQLAETFNQLSERVEETQETMEAERNRLNSVLSHMTDGVIATDRRGKILTINEMA 287

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
             L     E+ +       L+          L ++L       +++       E+ ++  
Sbjct: 288 LSLLDVKTEEAIGTFILTLLDIEADYN----LRKLLEAPNELLIDRSVSNKNDEQLIIRA 343

Query: 542 RIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
              + +      +     +HD++E ++ + +              + +F++ VSHE+RTP
Sbjct: 344 DFTMIRRESGFITGIVCVLHDVTEQEKNERE--------------RREFVSNVSHELRTP 389

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
           LT++  + E +     G   NP    ++        + ++ ++NDLL++S+++SG   L 
Sbjct: 390 LTSMHSYIEALSE---GAWKNPEVAPDFLKVTLEETDRMIRMINDLLNLSRMDSGTSELQ 446

Query: 659 FEPVSLDEAVSEAISLVQLYA--NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716
            E V+ +E V+  +    +     +K   I   F      +  D   + Q+  NIL+NAI
Sbjct: 447 LEYVNFNELVNFVLDRFDMMLDKEKKNYTIDREFTRRDLWLEIDTDKIIQVLDNILNNAI 506

Query: 717 HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
            ++P GG+I       ++   +  V D G+G+   ++ K    F ++  ++  +  GTGL
Sbjct: 507 KYSPDGGKITCRL-LETHNNAVFSVTDQGLGIPKKDIAKVFDRFYRVDKARARKQGGTGL 565

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GL ++K ++ A+ G  ++ S   KG+   I  P
Sbjct: 566 GLAISKEVIRAHNGFIWVESEEGKGSTFYISLP 598


>gi|284990063|ref|YP_003408617.1| multi-sensor signal transduction histidine kinase [Geodermatophilus
           obscurus DSM 43160]
 gi|284063308|gb|ADB74246.1| multi-sensor signal transduction histidine kinase [Geodermatophilus
           obscurus DSM 43160]
          Length = 634

 Score =  340 bits (871), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 112/642 (17%), Positives = 222/642 (34%), Gaps = 50/642 (7%)

Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH---LRMKNKVSSLTEYYAHKD 251
            L  RL      +  +        K  + +  Q++P               L      +D
Sbjct: 15  RLAARLLDVPFAMVNLVADDHQWTKAGHGLAVQRTPLSDSICRYPVQSGVRLEVNDLTED 74

Query: 252 DVLKTEKYPLLTSEESSLPEQE--DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
           +  +T  + +          +      T              L ++ +     L+     
Sbjct: 75  EPFRTNAFVVEDPHVRFYAGEPLSAGGTPVGTLCVLDTEPRELSDDQRALLAELAAWAEA 134

Query: 310 SLS--------AYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDI 360
            L+        A   + E+     VD  P   F V   G     N     L         
Sbjct: 135 ELNNTALNHLVAELHDREHRLQRLVDAVPEGVFLVDEAGAARATNAVAERLFGLP----H 190

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
                L TLL        +   P    R        +    T +    +   +       
Sbjct: 191 GRRVPLDTLL-----PGLSPDSPPFARRRRGDRTGVTRAEVTGRSADGHRFPLEVSVSPL 245

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
            +   +      +  +       + ++  +      IL +  DGI   +  G+++  N A
Sbjct: 246 EDAGDD--RWLVLARDLSPREDAEAELRRQERLTSMILASAGDGIVGSDHAGVVVFANPA 303

Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS----TKEE 536
            +++ G    D++ K          P        E  +       + + + +     ++ 
Sbjct: 304 ATRILGCRESDLVGKSLHAVAHHTRPDGSPFPQDECPTHRAITESQFVVVHTDLFWRRDG 363

Query: 537 KLLSLRIIIKKL---PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
           + + + + +  +           T  DIS+  + +                K +F++ VS
Sbjct: 364 RPVPIEMSVAPIVSGDEVHGAVTTFRDISQRTEVE--------------RLKDEFISVVS 409

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HE+RTPLT+I G   ++ N   GP+   +     +   R+   + ++V+D+LD+ ++E+G
Sbjct: 410 HELRTPLTSIKGSLSLLTNGVMGPVPAAQQP-LLDMARRNAERLGELVDDILDLDRLEAG 468

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS-FANNIPRILADLRSVKQIALNIL 712
           +M L       DE  ++ +  +Q  A    + +           +  D   + Q+  N++
Sbjct: 469 RMPLRPVETDADELAAQVVGSLQPAAAVAGVELSVKPCGGGATVVRVDPHRMNQVLTNLV 528

Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
            NAI F+  G  + +S +  + +EV L VRD G G+   +     + F Q+      R  
Sbjct: 529 GNAIKFSSPGCPVTVSVS-RAGDEVCLAVRDRGPGIPEDQHAAVFERFRQVHEPGGART- 586

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           GTGLGLP+A+ +VD + G+  + S P KG+   ++ P    +
Sbjct: 587 GTGLGLPIARGIVDRSGGRIELTSEPGKGSTFTVVLPAARET 628



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/355 (12%), Positives = 90/355 (25%), Gaps = 32/355 (9%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD-------ILHIDPNNHIGDLLKRQNT 142
           D  G +   +    + +G     ++G  L  V+            D       + + Q  
Sbjct: 292 DHAGVVVFANPAATRILGCRESDLVGKSLHAVAHHTRPDGSPFPQDECPTHRAITESQFV 351

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
                  W  +G    VPI+++  PI       SG    G V   R  +    + +  D+
Sbjct: 352 VVHTDLFWRRDGRP--VPIEMSVAPI------VSGDEVHGAVTTFRDISQRTEVERLKDE 403

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
             S +    +   +  K    + +     P    +  +  +    A +   L  +   L 
Sbjct: 404 FISVVSHELRTPLTSIKGSLSLLTNGVMGPVPAAQQPLLDMARRNAERLGELVDDILDLD 463

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
             E   +P +      +       Q  G+LQ  +  +   LS +     +       +  
Sbjct: 464 RLEAGRMPLRPVETDADE---LAAQVVGSLQPAAAVAGVELSVKPCGGGATVVRVDPHRM 520

Query: 323 PETVDKC------------PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
            + +               P+   V   G+      +          D           +
Sbjct: 521 NQVLTNLVGNAIKFSSPGCPVTVSVSRAGDEVCL--AVRDRGPGIPEDQHAAVFERFRQV 578

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
             P  +       + + R           L +          +     E      
Sbjct: 579 HEPGGARTGTGLGLPIARGIVDRSGGRIELTSEPGKGSTFTVVLPAARETTGGDG 633


>gi|196232629|ref|ZP_03131481.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Chthoniobacter flavus Ellin428]
 gi|196223391|gb|EDY17909.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Chthoniobacter flavus Ellin428]
          Length = 1047

 Score =  340 bits (871), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 105/753 (13%), Positives = 239/753 (31%), Gaps = 69/753 (9%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL-HIDPNNHIGDLLKRQNTWYGKT 147
            D  G ++ ++       G    + IG     +       +    +   +    TW G+ 
Sbjct: 185 TDEKGIIQWVNPAFTAMTGYTPEEAIGQNPRLLKSGEHDPEFYQRLWQTILSGQTWRGEF 244

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
           T    +G+       ++  P+  ++ E + F    +++    +    A  +  + KF  +
Sbjct: 245 TNRRKDGSLYCDLHTIS--PVRGKDGEITHF--VAVMNDVTENRRKEAAMRASETKFRSV 300

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK-----VSSLTEYYAHKDDVLKTE-KYPL 261
            E       +  +     +         +  +                D     E     
Sbjct: 301 FEAANDGMLILHDGAFTDANTKTLEMFGLAREQLIGATPGDISPETQPDGRGSREVAMGK 360

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
           + +  +  P+  ++     +        G  +   +     L+     S      E    
Sbjct: 361 MQNALAGEPQFFEWVLRRQDGRPIDVEVGLNRFELEGENYLLAITRDISERKRAAEKLGR 420

Query: 322 TPETV----DKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
           + E +        +  + +    N    +     L   K     E   G           
Sbjct: 421 SVERLNLATHAAGLGVWDWDVQKNELIWDDRMYELYGLKK----EHFSGAYDTWIQHVHP 476

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           ++     + +  + R           I+W   N   +        +   + +   G+  +
Sbjct: 477 EDAVRCDLEVQMALRGQKDLDME-FRIRWPNGNVRQIKAYAEVVRDAGGQPLRVTGVNYD 535

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRK 495
             + R   +++  +   L        + I       G++   N    +L+G+   + + +
Sbjct: 536 ITERRRADQRIREQAEMLKR----AHEAIIEREVHTGLVTFWNEGAERLYGWSAAEAMGR 591

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-- 553
             +       P  M      +L+    +          K+ + L +   +  L       
Sbjct: 592 HGSFLFA--DPGAMERITENLLAAGEWRG---EVQHVAKDGRKLVVSSHVTLLRGDDGEP 646

Query: 554 --YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
               +   DI+E K+ + +   A+++            + V+H++   L  I+  S  + 
Sbjct: 647 KSALVINIDITEQKKMEAQFLRAQRM-----ESVGTLASGVAHDLNNILAPIM-MSVPLL 700

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK-IESGKMNLHFEPVSLDEAVSE 670
            Q+  P          + I+        IV  +L   + +E  ++ L      +   + E
Sbjct: 701 RQQLPPDTLDAV---VSNIETCVERGARIVQQVLAFGRGLEGERLPLK-----IGAVIDE 752

Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
            +++++     K I +       +P ++ D   + Q+ LN+  NA    P GG++ +S T
Sbjct: 753 MMAIMRETFP-KDITLECLPVAKMPPVVGDATQLHQVLLNLCVNARDAMPGGGKLRLSAT 811

Query: 731 H--------------TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
           H                   V+L V D+G G+    +E+  +PF     +    G+GTGL
Sbjct: 812 HLEVDASYASMLPEAKPGPYVLLEVADSGSGIPPEVVERIFEPFFTTKET----GKGTGL 867

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GL     +V ++ G   + + P KGT  ++  P
Sbjct: 868 GLSTVHGIVRSHGGFIKVATEPGKGTTFQVYLP 900



 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 37/337 (10%), Positives = 101/337 (29%), Gaps = 17/337 (5%)

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
               +     SE +++  +     ++  +  K+     +    +++ E  +         
Sbjct: 106 ASPHELVAAISEAAAVHHRPPSVHLSETEILKEYSERLVLKLEEKNVELQA---RTEELE 162

Query: 314 YFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                  L  + ++       +    G + + NP+F  +T Y   + I         L  
Sbjct: 163 RSRAQSLLQAKVLETTANAVIITDEKGIIQWVNPAFTAMTGYTPEEAIGQNP----RLLK 218

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
               D    + +                 T +    +             +  E      
Sbjct: 219 SGEHDPEFYQRLWQTILSGQTWRGE---FTNRRKDGSLYCDLHTISPVRGKDGEITHFVA 275

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
           +  +  + R  +  M     +  S+ EA +DG+ I+  +G     N    ++FG   E +
Sbjct: 276 VMNDVTENRRKEAAMRASETKFRSVFEAANDGMLIL-HDGAFTDANTKTLEMFGLAREQL 334

Query: 493 LRKP---FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK-- 547
           +       +   + +        + ++ +    +      +   ++ + + + + + +  
Sbjct: 335 IGATPGDISPETQPDGRGSREVAMGKMQNALAGEPQFFEWVLRRQDGRPIDVEVGLNRFE 394

Query: 548 LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
           L   +       DISE K+   KL  + +     +  
Sbjct: 395 LEGENYLLAITRDISERKRAAEKLGRSVERLNLATHA 431



 Score = 84.7 bits (208), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 63/167 (37%), Gaps = 9/167 (5%)

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQ--LCS-ILEATSDGIAIINREGIILSTNRAVSKL 484
                +E ++V+ +    ++E    Q  L + +LE T++ + I + +GII   N A + +
Sbjct: 142 RLVLKLEEKNVELQARTEELERSRAQSLLQAKVLETTANAVIITDEKGIIQWVNPAFTAM 201

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
            GY  E+ + +   +             L + +     QT         K+  L      
Sbjct: 202 TGYTPEEAIGQNPRLLKSGEHDPEFYQRLWQTILSG--QTWRGEFTNRRKDGSLYCDLHT 259

Query: 545 IKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
           I  +         +   M+D++E ++++  +  ++          +D
Sbjct: 260 ISPVRGKDGEITHFVAVMNDVTENRRKEAAMRASETKFRSVFEAAND 306



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/399 (9%), Positives = 87/399 (21%), Gaps = 20/399 (5%)

Query: 93  GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPI 152
           G +   +E   +  G  A + +G     +           I + L     W G+      
Sbjct: 568 GLVTFWNEGAERLYGWSAAEAMGRHGSFLFADPGAM--ERITENLLAAGEWRGEVQHVAK 625

Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212
           +G  L   +      +   + E        I           A   R  +  S       
Sbjct: 626 DGRKLV--VSSHVTLLRGDDGEPKSALVINI--DITEQKKMEAQFLRAQRMESVGTLASG 681

Query: 213 GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ 272
               +      I             + + ++        +        +L        E+
Sbjct: 682 VAHDLNNILAPIMMSVPLLRQQLPPDTLDAVVSNIETCVERGARIVQQVLAFGRGLEGER 741

Query: 273 EDF--HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330
                  +        +         +              +       NL     D  P
Sbjct: 742 LPLKIGAVIDEMMAIMRETFPKDITLECLPVAKMPPVVGDATQLHQVLLNLCVNARDAMP 801

Query: 331 IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390
               +         + S+  +          +     +    P        +P    +  
Sbjct: 802 GGGKLRLSATHLEVDASYASMLPEAKPGPYVLLEVADSGSGIPPEVVERIFEPFFTTKET 861

Query: 391 R-TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449
                   + +H I  +    + +   P +            G      D    + ++  
Sbjct: 862 GKGTGLGLSTVHGIVRSHGGFIKVATEPGKGTTFQVYLPASPGCSQ-VRDADTARAEIPE 920

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
              +L          I +++ E  +  + R   + FGY 
Sbjct: 921 GHGEL----------ILVVDDEAAVRESARHALEAFGYE 949


>gi|148254533|ref|YP_001239118.1| two-component sensor histidine kinase [Bradyrhizobium sp. BTAi1]
 gi|146406706|gb|ABQ35212.1| putative two-component sensor histidine kinase with a ATP-binding
           domain (C-term) [Bradyrhizobium sp. BTAi1]
          Length = 774

 Score =  340 bits (871), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 133/685 (19%), Positives = 261/685 (38%), Gaps = 75/685 (10%)

Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKG----HSSVEKEKYDIFSQQSPPPHLRMKNKVS 241
              +  D  A  + L      +          H  V    + I ++      L   +++ 
Sbjct: 90  HMAMRPDRVAHIEHLQSLLPDMIPAWGAAPGRHVIVTGADHRILARVPVDAALGENDRIL 149

Query: 242 SL--TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
            L  T        +        L +   +    +    +       ++    +  +    
Sbjct: 150 DLISTAQLLATPGLQGAVTEITLPNGRPAFAISQLIKALPGRVVIIQEKLEPIWGSDAAL 209

Query: 300 FEYL-----------------SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH--GN 340
              L                             D         +++     + +    G 
Sbjct: 210 SVTLSATTGFVVLILGFAFHWQSTRAREGDLINDAVRGRIDTALNRGRCGLWDWDLSRGR 269

Query: 341 LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400
           +F++N S   +    +  D+   G ++ L+++  +        ++        I    + 
Sbjct: 270 IFWSN-SMFEMLGLDNRTDLLTFGEVNALVNSDDIDLFAIADQLVA-----GDIHQIDQS 323

Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
             ++    + + +              +   GI  +  + +    K     ++L   +E 
Sbjct: 324 FRMRHTEGHWIWLRVRCELSQGTTASGLHLIGIAVDITEQKSLAEKTVEADLRLRDAIET 383

Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLTEILSL 519
            S+   + +    ++  N    KL   P   ++    +   +E      +   L +    
Sbjct: 384 ISEAFVLWDANNRLVLCNSHFQKLHKLPDSAVIPGTSYETVIEVGKMPEIRTRLHD---H 440

Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL-------- 571
             +    +       +   L +    ++      Y     DI+  K+ + KL        
Sbjct: 441 SQQSPGARTFEAQLDDGSWLHIS---ERRTKDGGYVSVGTDITRIKEHEQKLVDNDLRLR 497

Query: 572 ---------------------------SHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
                                      S  K  AE+ +  KS FLA +SHE+RTPL AII
Sbjct: 498 ATVIDLQRSQSALERQAIELADLAEKYSQEKTRAEEANQTKSKFLANMSHELRTPLNAII 557

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           GFSE++ +  FG LG+ +Y EY + I  SG  +L+++ND+LD+SKIE+G+M L  EP+ L
Sbjct: 558 GFSEIMGSGMFGSLGSEKYQEYCHDILTSGQYLLEVINDILDMSKIEAGRMKLDMEPLDL 617

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724
            + ++E++ +V   A +KR+++      NIP I+AD R+ KQI +N+LSNA+ FTP GG+
Sbjct: 618 AKTLAESLRVVSGRAQDKRLVLDADIEGNIP-IVADRRATKQIMVNLLSNAVKFTPEGGR 676

Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
           + + +    + +V+L + DTG+G+    L +  +PF Q+ +       G+GLGL +A+++
Sbjct: 677 VTMRSRVFDD-KVVLIIADTGIGIPAQSLARLGRPFEQVESQMTKTYHGSGLGLAIARSL 735

Query: 785 VDANMGKFYIFSTPAKGTLIEIIFP 809
              + G   + S    GT++ +  P
Sbjct: 736 TQLHGGSMRLRSRIESGTVVRVTLP 760


>gi|327541975|gb|EGF28476.1| multi-sensor hybrid histidine kinase [Rhodopirellula baltica WH47]
          Length = 1150

 Score =  339 bits (870), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 111/743 (14%), Positives = 241/743 (32%), Gaps = 44/743 (5%)

Query: 92   HGYLKEISEELPKTI-GNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150
             G L +++    K I  N    + G  + ++     +D      + +   ++   +  + 
Sbjct: 291  DGTLTQMNAAGLKMIEANPTANVAGNSVYELIAPEFLDCFREFNERVCSGHSGVLEFDII 350

Query: 151  PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
             + G+  ++  +  A+P+   N E        +           A  +  +++F  L + 
Sbjct: 351  GLRGSRRHM--ETHAVPLSLTNGE---TVQLAVTRDITERKRSEATLRENERRFRALTQA 405

Query: 211  KKGHSSVEKEKYDIFSQQSP-PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
                       +                    S  ++Y H DD  +  K    + E+ S 
Sbjct: 406  TSDIVFRMNADWSEMGMLEGRAFIDSTTEPSRSWLDHYFHPDDQTEVRKVVQNSVEKQSF 465

Query: 270  PEQE-DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV-- 326
             E E     I+            + +++    E+       +     +E ++   +T+  
Sbjct: 466  YELEHRVIRIDGTLGWMHSRAVPILDDAGNVVEWFGAGTDVTERKQSEEFQHRATQTLLT 525

Query: 327  --DKCPIPFFVYSHGN-----LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
              ++ P+  ++             A P+F  +      D  E    + T+      S+  
Sbjct: 526  VIEQSPLGIYLVDGDFKIAQVSLGAEPAFQNVQPVIGRDFEE---VMHTIWPPEFASEAV 582

Query: 380  AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
             I    L   +                 E+              +           +   
Sbjct: 583  RIFRHTLKTGEPYVSPGLTEKRKDLGETESYEWQVNRITLADGSYGVVCYFF----DTTR 638

Query: 440  TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
             +     +    ++   + +  S         G     N+   +  G   E++    +  
Sbjct: 639  LQQAADALRESEVRFRMLADNMSQLAWTCCDLGECNWYNQRWYEYTGCTFEEMQGWGWRQ 698

Query: 500  FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YS 555
                +    +   +    +    +  E       ++ +          +         + 
Sbjct: 699  VHHPDHVDRVVERIQRAATAG--EVWEDTFPLKGRDGQYRWFLSRAVPIRDEEGTIVRWF 756

Query: 556  LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
             T  D++E ++ +  L             K +FLA ++HE+R PL  I    +++     
Sbjct: 757  GTNTDVNELRETQQLLHD-------ADRRKDEFLAMLAHELRNPLAPIRSGLDLLA---- 805

Query: 616  GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
                +  + +    +      V+ +V+DLLD+S+I  GK+ L  E +     V +AI  V
Sbjct: 806  -IADDDEHRDVVRVMQEQVTHVVRLVDDLLDVSRIMRGKVELRKERIEFQSTVRKAIDAV 864

Query: 676  QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
            +        L+  +       + AD   + Q+  N+LSNA  +    G I +S  H  NE
Sbjct: 865  RDVIESHGHLLTITLPEKTVWLEADPVRIVQVLENLLSNATKYMDGSGAIELS-AHVKNE 923

Query: 736  EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
             + ++++D G+G+    L    + F Q   S      G G+GL L K +++ + G  +  
Sbjct: 924  SLFIQIKDEGIGIDQEFLPNIFELFAQSDRSLDRSKGGLGIGLTLVKQLLEMHGGNIHAE 983

Query: 796  S-TPAKGTLIEIIFPLYDTSHPH 817
            S    KG+   I  P+     P+
Sbjct: 984  SDGLGKGSSFHIELPIASPPEPN 1006



 Score =  110 bits (275), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 48/410 (11%), Positives = 117/410 (28%), Gaps = 9/410 (2%)

Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE 245
           +   ++  RA  K++  +   L  +  G S+ ++     F        LR  + V  L +
Sbjct: 10  IAESNDQRRAHLKQVLDRRHDLVTVDGGKSAWQQLTQGRFDAVVAGFDLREVSGVKLLAQ 69

Query: 246 YYAHKDDVLKT-EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
             AH +             S       Q+ F     +          L            
Sbjct: 70  TRAHAELRGVPFVLVADEASPIDPTTWQQVFEFGRSDILCSPINEHELLARVDSIIRRAR 129

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364
            +N  +      +          +     +  S   + Y + + + +   K + D     
Sbjct: 130 VKNESADMLQRQKSRLQMALLASRMVAVEWDISADTVLY-SENAIEIFGIKLLSDHATGP 188

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
               L       D+       +  + +       +   I+ +    + +    +   +  
Sbjct: 189 TARKL----VHPDDIDTVEKTIRNTLQGSREFQTQFRIIRPDNGEIVWIEERGYVATDAS 244

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
            +      +  +    R  ++ ++     L +I + T + I ++  +G +   N A  K+
Sbjct: 245 GKPTKLIAVAVDITARRNAEQAIQEREHYLQAIFDTTPECIKVVKSDGTLTQMNAAGLKM 304

Query: 485 FGY-PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
               P  ++        +          +   + S      LE   +G     + +    
Sbjct: 305 IEANPTANVAGNSVYELIAPEFLDCFREFNERVCS-GHSGVLEFDIIGLRGSRRHMETHA 363

Query: 544 IIKKLPFSSCY-SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
           +   L            DI+E K+ +  L   ++     +   SD + R+
Sbjct: 364 VPLSLTNGETVQLAVTRDITERKRSEATLRENERRFRALTQATSDIVFRM 413


>gi|119898108|ref|YP_933321.1| putative two-component hybrid sensor and regulator [Azoarcus sp.
           BH72]
 gi|119670521|emb|CAL94434.1| conserved hypothetical two-component hybrid sensor and regulator
           [Azoarcus sp. BH72]
          Length = 1014

 Score =  339 bits (870), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 117/656 (17%), Positives = 218/656 (33%), Gaps = 53/656 (8%)

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
           L  +   L                + +       +R  +++  L E+      ++     
Sbjct: 206 LTFRMVRLDVAVPSLGMALPVATALAAASFSLLVMRPASRLVQLLEHD-SPGALIFRRLV 264

Query: 260 PLLTSEESSLPEQEDFH-TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS-------- 310
           P+       +   +         + T+ +   T+          L   +           
Sbjct: 265 PMAVGLPLLVAWLQALGLRAGWFESTESEGVLTVAAIVAGVGLILQMSSRLDEMNLSRSQ 324

Query: 311 LSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
                D        T+         V     + + N +   L   ++   I         
Sbjct: 325 AERRADTQRQWLEVTLANIGDAVVTVNDEVRVSFMNAAAEALLDVRAAAAIGQPVAELLT 384

Query: 370 LDAPKLSDN---------------NAIKPVMLYRSDRTCIAASARLHTIQWNRENSL--- 411
           L     S+                       +   D T  A       I+ +RE  +   
Sbjct: 385 LVDGSSSEPLACPLHAAFSLARTVAVEGEPAVRHRDGTLQAVEVTATPIKDHRERVVGGV 444

Query: 412 -AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK----MEIEVMQLCSILEATSDGIA 466
             +  +   +A +  E      ++    +      +    +      L +I  +T + I 
Sbjct: 445 MVLRDVSVGRAREHAEREAYAALDRRVAERTRALDRTMSVLRESTTLLRTIAASTPELIV 504

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL-EQNTPSVMNHYLTEILSLDLRQTL 525
             +R+G I+  N A  +  G     ++ +       +             ++       +
Sbjct: 505 AKSRDGRIMMINPAALQAMGMSRAQVVGRKEEELFGDAEDIRRSAENDRRVIETGRPVVV 564

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKL-------SHA 574
           E+           L   +    L  +            DI+E K+ +  L          
Sbjct: 565 EERRTVQEGARTYL---VTKSPLRDAQGQVFGLVGVAKDITERKRAQQDLEQLLAAEHRL 621

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
           +  AE+ +  K +FLA VSHE+R+PL A+ G+S+V+   R            A  I R+ 
Sbjct: 622 RGEAERANRAKDEFLAIVSHELRSPLNALKGWSQVLIGSR--EPDAALVARAAEAIKRNI 679

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
           +    +++DLLD S+I SGK++L    V+L + V+  + L    A +K I +R +     
Sbjct: 680 DHQTRLIDDLLDSSRIISGKLDLALHRVNLVDVVNAVLDLSTDSAQDKHIELRFACDVEE 739

Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELE 754
             +  D   ++Q+  N+LSNAI FTP GG++ +    T      L V D G+G+    L 
Sbjct: 740 LYVDGDFDRLQQVLSNLLSNAIKFTPEGGRVQVRLLCTER-SAELSVTDNGIGIEPDFLP 798

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFP 809
                F Q   S   R  G G+GL L + +V+ + G     S    +G +  +I P
Sbjct: 799 HVFDRFSQADTSMTRRYLGLGIGLALVRNLVELHGGTVQASSAGSNQGAMFTVILP 854



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 34/339 (10%), Positives = 81/339 (23%), Gaps = 25/339 (7%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVS--DILHIDPNNHIGDLLKRQNTWYGKTT 148
             G +  I+    + +G    +++G +  ++            +   +++       +  
Sbjct: 508 RDGRIMMINPAALQAMGMSRAQVVGRKEEELFGDAEDIRRSAENDRRVIETGRPVVVEER 567

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               EG   Y+   +   P+     +  G    G+          +   ++L      L 
Sbjct: 568 RTVQEGARTYL---VTKSPLRDAQGQVFGL--VGVAKDITERKRAQQDLEQLLAAEHRLR 622

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
              +  +  + E   I S +   P   +K     L         ++      +  + +  
Sbjct: 623 GEAERANRAKDEFLAIVSHELRSPLNALKGWSQVLIGSREPDAALVARAAEAIKRNIDHQ 682

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH------PSLSAYFDEGENLT 322
               +D    +     K        N        L             L    D  E   
Sbjct: 683 TRLIDDLLDSSRIISGKLDLALHRVNLVDVVNAVLDLSTDSAQDKHIELRFACDVEELYV 742

Query: 323 PETVDKCPIPF---------FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
               D+              F    G +       L   +   +   +   G+       
Sbjct: 743 DGDFDRLQQVLSNLLSNAIKFTPEGGRVQV---RLLCTERSAELSVTDNGIGIEPDFLPH 799

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
                +     M  R     I  +   + ++ +     A
Sbjct: 800 VFDRFSQADTSMTRRYLGLGIGLALVRNLVELHGGTVQA 838


>gi|303241662|ref|ZP_07328160.1| multi-sensor signal transduction histidine kinase [Acetivibrio
           cellulolyticus CD2]
 gi|302590777|gb|EFL60527.1| multi-sensor signal transduction histidine kinase [Acetivibrio
           cellulolyticus CD2]
          Length = 606

 Score =  339 bits (870), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 83/376 (22%), Positives = 171/376 (45%), Gaps = 24/376 (6%)

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
           + +    ++  E  ++ +IL   +DG+   N +G ++  N A   + G    ++    F+
Sbjct: 246 ELKKTLNEISREKNKIETILNYMTDGVIAFNLDGEVVHANPASKLMLGVNEFNMDFNKFS 305

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM 558
                        YL    + +   + +   +        +   +       +      M
Sbjct: 306 NMYNLGITIEEMLYLETFSTKEASLSFDNKYIR-------VYFALSTNDQNKAEGIIAVM 358

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
           HD +  ++                + + +F+A VSHE+RTPLT+I  +SE + +      
Sbjct: 359 HDNTVQQKL--------------DNMRREFVANVSHELRTPLTSIKSYSETLMDGAL--E 402

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
                  + N I+   + +  +V DLL +S++E+ +M  + +P   +  V  ++  ++L 
Sbjct: 403 DKETAYRFLNVINSEADRMTRLVKDLLQLSRLENEQMQWNMQPFCFESLVRSSVEKIELS 462

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738
           A EKR +I      + P + AD   ++Q+ LN+L+NAI +TP  G+I +        +  
Sbjct: 463 AKEKRQVIECFSIGDKPEVYADKDRIEQVVLNVLTNAIKYTPDKGKITVYIG-KMYSDAY 521

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           ++V D+G+G+   ++++  + F ++  ++     GTGLGL +AK +++A+ G   I S  
Sbjct: 522 VKVVDSGIGIPEEDIKRVFERFYRVDKARSREMGGTGLGLSIAKEIIEAHKGSISISSQL 581

Query: 799 AKGTLIEIIFPLYDTS 814
            KGT + +  P++  S
Sbjct: 582 GKGTEVIVRLPIHYES 597


>gi|238755038|ref|ZP_04616386.1| PAS/PAC domain [Yersinia ruckeri ATCC 29473]
 gi|238706742|gb|EEP99111.1| PAS/PAC domain [Yersinia ruckeri ATCC 29473]
          Length = 1522

 Score =  339 bits (870), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 111/644 (17%), Positives = 228/644 (35%), Gaps = 36/644 (5%)

Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS 242
           +      D +  AL  +       + ++ +    V +    I          +   K+  
Sbjct: 369 LARNMTADLERLALVAKNTSNAVIITDVNRKIVWVNEGFERITGYSRAEAFGKSPGKLLQ 428

Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302
             +      D     K         S   +      +  +Y  +       N+  E   +
Sbjct: 429 CKDT-----DQAVASKMRTALDAGESFKGEIVNRDKSGREYWIELEIQPRYNDQNEPIGF 483

Query: 303 LSHRNHPSLSAY----FDEGENLTPETVDKCPIPFFV---YSHGNLFYANPSFLLLTKYK 355
           ++  +  S         +         +    +   +    S G +   N +F  ++ Y+
Sbjct: 484 MAIESDISERKATYQRLEAALRENNALLSTLNLHGIISTADSTGTITDVNNAFCNISGYR 543

Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
             + I      +  L           + +    +    I+    +     +  +   +  
Sbjct: 544 REELIGQ----TYRLVDSHTHSAEFWQSMWNDIASG--ISWRGEICNKAKDG-SLYWVDT 596

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
                 N   +      I+ +    +  +  + I   QL    +    GI  +N     L
Sbjct: 597 TIAPFNNSAGQIERYISIQVDITANKEQQASLIIAKNQLVRAADVAELGIWTLNVSDGSL 656

Query: 476 STNRAVSKLFGYPVEDILRKPF-----TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530
           S +  ++ ++  P E +   P         L     S +   +   L   +    +   +
Sbjct: 657 SFDDRMNDIYSLP-ESLRNTPIPLTYWYSLLHPEDISEVKKAIETALEN-VSVYRQIFRI 714

Query: 531 GSTKEEKLLSLRIIIKKLPFSSCYS--LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
               +   +     +++              DI++ ++ +N L  A++ AE+ +  KS F
Sbjct: 715 FVKNQVHFIQSTGTVERDENGKAMLMMGINRDITQQREAENILKTARETAEEANKAKSAF 774

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
           LA +SHE+RTP+ AI+G   +++        + +  +YA   + +   +L ++ND+LD S
Sbjct: 775 LANMSHELRTPMNAILGMLTLLRRTGL----DRKQADYAAKSETATRTLLRLLNDILDFS 830

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQI 707
           KIESGKM L   P  +   + +   ++       ++ +      ++P+ +  D   ++QI
Sbjct: 831 KIESGKMALECIPFDIHVMLRDLAVILSSNLKATKVEVLFDIDPSLPQFVEGDSMRLQQI 890

Query: 708 ALNILSNAIHFTPSGGQII-ISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIP 764
             N+  NA+ FT  G  ++ I     S  +V L+  VRDTG+G+     +     F Q  
Sbjct: 891 LTNLGGNALKFTEQGEVVLFIKVIDRSRHQVRLQFGVRDTGIGIAPENQKTIFSGFTQAE 950

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            S   R  GTGLGL +++  V    G+  + S   KG+L     
Sbjct: 951 ASTTRRFGGTGLGLVISQRFVALMGGELTLESQLGKGSLFHFTI 994



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 53/450 (11%), Positives = 117/450 (26%), Gaps = 51/450 (11%)

Query: 174 EFSGFRGFGIVHVNRVD--NDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231
           EF G RGFG +        ND  A  +        L +++        + Y I   +   
Sbjct: 111 EFPGVRGFGFIQHVERSHLNDFIAETRADGAPNFALRQLQDKQH---DDLYIIKYIEPAE 167

Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291
            +                          P L+     +    +   + L     K     
Sbjct: 168 KNQGADGLDIGSESVRREAALSAINSGKPTLSGTIRLVQSNVNTPGVLLFVPVYKWGTNP 227

Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGE-----NLTPETVDKCPIPF---FVYSHGNLFY 343
                +++       +   ++    +        +  E  D          V+      Y
Sbjct: 228 TTPAERQASLVGLLYSPIVIADLLRDIPEFVNGRVDVELFDSLNELSNQTLVFDADGSKY 287

Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403
           A+        +   +        + +     +      + + L  S              
Sbjct: 288 AD--------FIPDEKHTNQTIAARIFHNTNILP-LPGREMTLRVSSTPAFE-ELTQRYA 337

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
            W     + +       A         +G    ++  R     +E    +L  + + TS+
Sbjct: 338 PW----LILVFGFLLSSALALLIWQQVSGRNRAEMLARNMTADLE----RLALVAKNTSN 389

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT-PSVMNHYLTEILSLDLR 522
            + I +    I+  N    ++ GY   +   K     L+       +   +   L     
Sbjct: 390 AVIITDVNRKIVWVNEGFERITGYSRAEAFGKSPGKLLQCKDTDQAVASKMRTALDAG-- 447

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIA 578
           ++ +   +   K  +   + + I+           +     DISE K    +L       
Sbjct: 448 ESFKGEIVNRDKSGREYWIELEIQPRYNDQNEPIGFMAIESDISERKATYQRL------- 500

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
           E      +  L+ ++      L  II  ++
Sbjct: 501 EAALRENNALLSTLN------LHGIISTAD 524



 Score = 76.2 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/377 (8%), Positives = 91/377 (24%), Gaps = 21/377 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP--NNHIGDLLKRQNTWYGK 146
            D +  +  ++E   +  G    +  G     +      D    + +   L    ++ G+
Sbjct: 394 TDVNRKIVWVNEGFERITGYSRAEAFGKSPGKLLQCKDTDQAVASKMRTALDAGESFKGE 453

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                  G      I+L   P Y+   E  GF    I              +   ++ + 
Sbjct: 454 IVNRDKSGREY--WIELEIQPRYNDQNEPIGFM--AIESDISERKATYQRLEAALRENNA 509

Query: 207 LHEIKKGHSSVEKEKY----DIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
           L      H  +            +          + ++   T                + 
Sbjct: 510 LLSTLNLHGIISTADSTGTITDVNNAFCNISGYRREELIGQTYRLVDSHTHSAEFWQSMW 569

Query: 263 TSEESSLPEQEDF--HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE- 319
               S +  + +      + + Y          N++ +   Y+S +   + +        
Sbjct: 570 NDIASGISWRGEICNKAKDGSLYWVDTTIAPFNNSAGQIERYISIQVDITANKEQQASLI 629

Query: 320 ---NLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
              N      D   +  + +         +     +  Y   + +       T   +   
Sbjct: 630 IAKNQLVRAADVAELGIWTLNVSDGSLSFDDRMNDI--YSLPESLRNTPIPLTYWYSLLH 687

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
            ++ +     +  +                N      +      + ++  + M   GI  
Sbjct: 688 PEDISEVKKAIETALENVSVYRQIFRIFVKN--QVHFIQSTGTVERDENGKAMLMMGINR 745

Query: 436 EDVDTRINKRKMEIEVM 452
           +    R  +  ++    
Sbjct: 746 DITQQREAENILKTARE 762



 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/251 (10%), Positives = 73/251 (29%), Gaps = 12/251 (4%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKRQNTWYGKTT 148
           D+ G + +++       G    ++IG     V S     +    + + +    +W G+  
Sbjct: 524 DSTGTITDVNNAFCNISGYRREELIGQTYRLVDSHTHSAEFWQSMWNDIASGISWRGEIC 583

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +G+  +V   +A  P  +   +   +    +      + + +A       +     
Sbjct: 584 NKAKDGSLYWVDTTIA--PFNNSAGQIERYISIQV--DITANKEQQASLIIAKNQLVRAA 639

Query: 209 EIKKGHSSVEKEKYDIFSQQSP-------PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
           ++ +             S           P  LR      +      H +D+ + +K   
Sbjct: 640 DVAELGIWTLNVSDGSLSFDDRMNDIYSLPESLRNTPIPLTYWYSLLHPEDISEVKKAIE 699

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
              E  S+  Q     +    +  +      ++ + ++   +      +     +     
Sbjct: 700 TALENVSVYRQIFRIFVKNQVHFIQSTGTVERDENGKAMLMMGINRDITQQREAENILKT 759

Query: 322 TPETVDKCPIP 332
             ET ++    
Sbjct: 760 ARETAEEANKA 770


>gi|307153865|ref|YP_003889249.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7822]
 gi|306984093|gb|ADN15974.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7822]
          Length = 1153

 Score =  339 bits (870), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 108/788 (13%), Positives = 245/788 (31%), Gaps = 79/788 (10%)

Query: 86   TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
             +  D  G+   I     +  G    ++   +       L  D  +   +L + +     
Sbjct: 376  VFITDDQGFFTFICPNTEQIFGYDYQEI---KFMKNIKNLLGDIFDTQQELTQFEKIINL 432

Query: 146  KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
            +  +    G    + I++    +                           + +  +++F 
Sbjct: 433  EKVIINKFGERRVLLINI--QQVSIAQGTI-----LYTCREITHRKKAEEILQDREEQFR 485

Query: 206  HLHEIKKGHSS-VEKEKYDIFSQQSPPPHL-------RMKNKVSSLTEYYAHKDDVLKTE 257
             L E  +      +   Y +         +         ++ +  +   Y    + +  +
Sbjct: 486  QLAENIRDVFFIHDSHSYQLIYISPAFEKIWGIKQEKVYEDSLIWMNSIYPEDREKVINK 545

Query: 258  KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD- 316
                  ++ + L  +      N      +     + NN  E +  +      +     D 
Sbjct: 546  VKQEQANQPTQL--EYRIVKPNQEIRWIRVRSFPVFNNLGEVYRIVGIAEDITERKQADQ 603

Query: 317  ---EGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIE--IAGGLSTLL 370
               E E      ++       V+     +   N   + L   +    +E      +   L
Sbjct: 604  LIYESEQRYRNLINNLHAGVIVHGSDSQILLCNSKAVELLGIERECLLEKTALDPVWHFL 663

Query: 371  DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
                   +    PV    + +  +  +  +  I+ N +  +      F + +        
Sbjct: 664  KEDGSLMSLKDYPVNQVIATKKSLT-NYVVGVIRKNSKTLIWGLVNAFPELDIEGNLTQI 722

Query: 431  NGIEPEDVDTR---------------------------------------INKRKMEIEV 451
                 +  + +                                         +  +E   
Sbjct: 723  VVTFFDITERQETELKLQKMNEELELKIEERTYHLHQANQQLRLEIFEREQAELALEENK 782

Query: 452  MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK-PFTVFLEQNTPSVMN 510
              L ++++     I + + +  ++  N  ++K +   ++ I  +       +        
Sbjct: 783  AFLRNVIDNVPSMIFVKDADSRVILANNFLAKFYNKSIDQIEGQQHIEFVPDLADQKKFL 842

Query: 511  HYLTEILSLDLRQTL-EKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQE 567
                ++        + E+     + E +                        DI+E K  
Sbjct: 843  QEDQQVFKSLETLLIPEQTITLPSGEVRYFQTSKTPLISIDGKVKYLLGVATDITERKNF 902

Query: 568  KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
            + +L  A    ++    K  F+  +SHE RTPLTAI+G +E +  +    L   +  ++ 
Sbjct: 903  EQQLEIALAQEKELHKLKIQFIDLISHEFRTPLTAILGSAEFV-ERHGEQLKAEKKEKHL 961

Query: 628  NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ-LYANEKRILI 686
              I  +G  + ++V+D+L IS+ ESGK+  +  P+   E     I  +Q  +A    I +
Sbjct: 962  RNILLAGRRLNELVDDVLSISRAESGKLEFNPTPLDFVEFCQNLIEEIQFGFAKNHHIEL 1021

Query: 687  RTS---FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
                     +      D + ++ I +N+LSNA  ++     I +S       ++I ++ D
Sbjct: 1022 LLKGFVPEKDCNICYLDEKCLRHILINLLSNATKYSAVDSLIQLSLDCQEQ-QIIFQISD 1080

Query: 744  TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
             G+G+   +     +PF +  N       GTGLGL + +  V  + GK    S   +GT 
Sbjct: 1081 QGIGIPLEDQSLLFEPFYRANNVHT--IPGTGLGLKIVQTYVTLHKGKVEFISEEGEGTT 1138

Query: 804  IEIIFPLY 811
              +  P Y
Sbjct: 1139 FTVTLPRY 1146



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 57/167 (34%), Gaps = 8/167 (4%)

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
                  ++  +   + ++        IL   SD + I + +G          ++FGY  
Sbjct: 341 FAVRTELELQQQKTAKILQDSENLHRLILTNISDSVFITDDQGFFTFICPNTEQIFGYDY 400

Query: 490 EDI-LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
           ++I   K     L       +     E+   +    LEK+ +    E ++L + I    +
Sbjct: 401 QEIKFMKNIKNLLGD-----IFDTQQELTQFEKIINLEKVIINKFGERRVLLINIQQVSI 455

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK-ESSHKSDFLARVSH 594
                   T  +I+  K+ +  L   ++   +   + +  F    SH
Sbjct: 456 -AQGTILYTCREITHRKKAEEILQDREEQFRQLAENIRDVFFIHDSH 501


>gi|117918935|ref|YP_868127.1| putative PAS/PAC sensor protein [Shewanella sp. ANA-3]
 gi|117611267|gb|ABK46721.1| putative PAS/PAC sensor protein [Shewanella sp. ANA-3]
          Length = 1686

 Score =  339 bits (870), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 111/591 (18%), Positives = 208/591 (35%), Gaps = 24/591 (4%)

Query: 235  RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294
                  S L +  A        E      + +  L  ++        +         L  
Sbjct: 623  DWPELQSILNKALAQIPQDKVREIQHRWVNVQYELGLKKQQVFDWAVRIAVAVVLVLLMF 682

Query: 295  NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTK 353
            + +                      N      D            G +   N + L L K
Sbjct: 683  SLRNRRLNKDIAQRIHTEEQLSLSMNKFQALFDSAVDACVITDRQGVIIECNSALLSLLK 742

Query: 354  YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS-DRTCIAASARLHTIQWNRENSLA 412
            Y+    +     L         +D+  +    L    ++  +   A   T       +  
Sbjct: 743  YQHKHQLIGRRTLVYYPPHLGETDSETLFEQRLQTVLEQGQLRFEADFVT-----SMAEI 797

Query: 413  MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG 472
            +      K  +   ++   G   +  + ++    +E E   L  +L  +  G+ I   EG
Sbjct: 798  VNVEVTLKRIELNGSLFVLGTYHDLSERKLMNALLERERDLLKHVLGRSPIGVWIC-IEG 856

Query: 473  IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
            +    N  ++++ G      + +       Q        +++E+         E      
Sbjct: 857  VCRYVNEQITEMTGLQ----VGQSVYPIFAQPD--DYRCHISELDLSQDSTVFETQLFDC 910

Query: 533  TKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
              + + + L          +       DI++ K  +++L+ AK  AE  +  KSDFLA +
Sbjct: 911  KGQRRDVLLTAYHTVQDGQNANLCWALDITDTKSIQDELAIAKDAAEAANRAKSDFLANM 970

Query: 593  SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
            SHEIRTP+ AI+G S ++           +  +Y   + ++   +L I+ND+LD SKIE+
Sbjct: 971  SHEIRTPMNAILGMSYLVLQTELSS----KQRDYVGKVHQAAGSLLGILNDILDFSKIEA 1026

Query: 653  GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNI 711
             KM++      LD+ +S   ++V     EK +         +PR    D   + QI +N 
Sbjct: 1027 EKMDIECAVFDLDDVLSNLANVVSYKVEEKNMAFIFDLPPELPRYYHGDGLRLGQILINY 1086

Query: 712  LSNAIHFTPSGGQIIISTTHTSNEE---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
             +NA+ F+ +   +++S     + E   +   V D G+G+   +       F Q+  S  
Sbjct: 1087 CNNAVKFSHNDSNVVLSCESKVHGEQVELTFCVEDFGIGIPEQKQGVLFGSFEQVDASTS 1146

Query: 769  IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL--YDTSHPH 817
                GTGLGL + K +     G+ +  S    G+   +   L   DT  P+
Sbjct: 1147 REYGGTGLGLAICKRLAHLMGGEVWCESELGVGSRFYVRLTLDCADTYDPN 1197


>gi|256060749|ref|ZP_05450912.1| PAS domain S-box-containing protein [Brucella neotomae 5K33]
 gi|261324738|ref|ZP_05963935.1| multi-sensor signal transduction histidine kinase [Brucella
           neotomae 5K33]
 gi|261300718|gb|EEY04215.1| multi-sensor signal transduction histidine kinase [Brucella
           neotomae 5K33]
          Length = 783

 Score =  339 bits (870), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 123/543 (22%), Positives = 227/543 (41%), Gaps = 54/543 (9%)

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEI 362
                        + +      + +     + +       Y + S   +  Y++ D +  
Sbjct: 241 QAARAREADDLSGQIQRRIDMALARGRCGLWDWDMARGRIYWSRSMYEMLGYEAQDAVLP 300

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
            G ++ +++       +  +      +         R+  ++    + + M       + 
Sbjct: 301 FGDVAAIINEEDGDLYSIAEQA----AAGDISHVD-RVFRMRHADGSWVWMRVRAEIASE 355

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
                +   GI  +  +     ++     M++   +E  S+   + +    ++  N   S
Sbjct: 356 GD---LHLVGIAFDVSEQHRFAQQTAEADMRIREAIENISEAFVLWDANNRLVMANSKFS 412

Query: 483 KLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
           +  G PV  +    P         P      +    +    QT E+       + + L +
Sbjct: 413 EYAGLPVWTLKPGVPRNEVDAHTRPFTFERRMANEHNRAGGQTFERQL----SDGRWLQV 468

Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH---------------------------- 573
               ++            DI++ K  + +L                              
Sbjct: 469 N---ERRTQDGGMVSIGTDITQLKLHQERLVDSERRLMATVHDLSIARKGERDRVRELSE 525

Query: 574 -------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
                   K+ AE  +  KS+FLA +SHE+RTPL AIIGFSE+I+   FGPLG+ RY EY
Sbjct: 526 LARKYSLEKERAEAANRAKSEFLANMSHELRTPLNAIIGFSEMIQAGTFGPLGSDRYEEY 585

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
            N I  SGN +L+++ND+LD+SKIE+G  +L  E + L   ++E + ++ L A EK I +
Sbjct: 586 INDIHTSGNFLLNVINDILDMSKIEAGHFSLDREEIDLCPLINETVRIISLQAEEKNIAV 645

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
            T   + +  + AD R++KQ+ +N+LSNA+ FT  GG+I +    T    + + ++DTGV
Sbjct: 646 ETRIEDAM-ELYADRRAIKQVLINLLSNAVKFTSYGGRITVRARKT-GAALFMTIQDTGV 703

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+    L K  +PF Q+ N       G+GLGL +++++ + + G   I ST   GT++ +
Sbjct: 704 GIPKSALRKIGQPFEQVENQFTKTHTGSGLGLAISRSLAELHGGWLRIRSTERVGTVVSV 763

Query: 807 IFP 809
             P
Sbjct: 764 CIP 766



 Score = 41.2 bits (95), Expect = 0.67,   Method: Composition-based stats.
 Identities = 30/254 (11%), Positives = 61/254 (24%), Gaps = 18/254 (7%)

Query: 86  TWNID-AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN--HIGDLLKRQNT 142
            W+ D A G +   S  + + +G  A   + +   DV+ I++ +  +   I +     + 
Sbjct: 270 LWDWDMARGRI-YWSRSMYEMLGYEAQDAV-LPFGDVAAIINEEDGDLYSIAEQAAAGDI 327

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
            +             +V + + A      +    G     I       +         D 
Sbjct: 328 SHVDRVFRMRHADGSWVWMRVRAEIASEGDLHLVG-----IAFDVSEQHRFAQQTAEADM 382

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
           +     E       +      +    S          V +L       +    T      
Sbjct: 383 RIREAIENISEAFVLWDANNRLVMANSKFSEY-AGLPVWTLKPGVPRNEVDAHTRP---F 438

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG---- 318
           T E     E          +      +  +     +    +S     +      E     
Sbjct: 439 TFERRMANEHNRAGGQTFERQLSDGRWLQVNERRTQDGGMVSIGTDITQLKLHQERLVDS 498

Query: 319 ENLTPETVDKCPIP 332
           E     TV    I 
Sbjct: 499 ERRLMATVHDLSIA 512


>gi|254422420|ref|ZP_05036138.1| PAS fold family [Synechococcus sp. PCC 7335]
 gi|196189909|gb|EDX84873.1| PAS fold family [Synechococcus sp. PCC 7335]
          Length = 1023

 Score =  339 bits (870), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 93/406 (22%), Positives = 176/406 (43%), Gaps = 39/406 (9%)

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
             +  R ++ ++     +  + +  T   + + + +G     NR +   F    ++++ K
Sbjct: 176 RLLQRRQSEERLRDSEARFRAFMNNTDAMVFMKDSQGCFTYVNRPLEAEFKLQPDELVGK 235

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-- 553
                  +     +      +LS +  Q+L ++    T +      ++        S   
Sbjct: 236 DDFYLSSEEVAKQVRENDARVLSNNQSQSLVEVV--PTPDGISRYWKVNKFPFTDHSGQK 293

Query: 554 -YSLTMHDISEWKQEKNKLSHAKKIAEKES--------------SHKSDFLARVSHEIRT 598
               T  DI++ KQ + +L+  K   ++ +                KS FLA +SHEIRT
Sbjct: 294 HVGGTAFDITQQKQLEKRLTLEKLEQQRINESLAIAIKAAEAASQAKSSFLAMMSHEIRT 353

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
           P+ A++G +E++     G   +P+  ++ N I   GN +L ++ND+LD SKIES  + L 
Sbjct: 354 PMNAMLGMAELL----DGTELSPQQQDFINIIRTGGNTLLTVINDILDFSKIESNNLELE 409

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN-NIPRI----LADLRSVKQIALNILS 713
                L E + + ++L    A EK++ + +      + RI      D+  ++QI  N++S
Sbjct: 410 ISRFDLYECIEQVLTLFSNQAEEKQLSLTSIVEPIELDRIPTYFKGDVTRLQQILSNLVS 469

Query: 714 NAIHFTPSGG---QIIISTTHTSNE--------EVILRVRDTGVGMTNYELEKAMKPFGQ 762
           N+I FT  G    Q+ +    +           E+   V DTG+G+   ++    +PF Q
Sbjct: 470 NSIKFTQEGEVSLQVKVGAVASEERAEEPSSNYELQFLVTDTGIGIAEEKIPYLFQPFSQ 529

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           +  S   R  GTGLGL ++K +V+   G+  + S    G+      
Sbjct: 530 VDASMTRRYGGTGLGLAISKQLVELMGGEMGMVSKVGSGSTFHFCI 575


>gi|75911124|ref|YP_325420.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
 gi|75704849|gb|ABA24525.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
          Length = 889

 Score =  339 bits (870), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 99/433 (22%), Positives = 189/433 (43%), Gaps = 20/433 (4%)

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
           +  ++R+ I     +  ++     S A       + N+    +     E       + +R
Sbjct: 313 IAITERSSIQVELAVEKVRRGEYQSRAELSEKLIQLNESLVEINDCLEESHREKDELLRR 372

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           + +    +L +IL + +D    +NR+  I   N   +K+     ED++ K +     +  
Sbjct: 373 E-QALRSRLSNILSSMTDAFIAVNRDWDITYCNHQAAKIQHLEPEDLIGKNYWEQWARTK 431

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
            +         L+ ++   +    L    +   +   +                +I+E K
Sbjct: 432 GTDFEREYRRSLAENIP--VHFEVLYELWD---MWFEVHAYPAEDGLGIF--FRNITERK 484

Query: 566 QEKNKLSH-------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
           Q + +  +       A+  AE+ +  K DFLA +SHE+RTPL  I+G++ ++K +    L
Sbjct: 485 QAEQEREYLLMREQIARSEAERANRLKDDFLAVLSHELRTPLNPILGWATLLKKRN---L 541

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
                      I+R+  L + ++ DLLD+S+I+ GK+NL+ + V+L   + EA+  V L 
Sbjct: 542 EEATRRRGIETIERNAKLQIQLIEDLLDVSRIQQGKLNLNIQSVNLVNTIEEALETVSLA 601

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738
              K I ++T+   N+  +  D   ++QI  N+L+NAI FTP  GQI ++     N    
Sbjct: 602 IEAKNIDVKTALNVNVCMVAGDAARLQQIIWNLLANAIKFTPPAGQIQVALERV-NNSAQ 660

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST- 797
           ++++D G G+++  L    + F Q   +   +  G GLGL + K + + + G     S  
Sbjct: 661 IQIQDNGKGISSEFLPYVFEYFRQADGTITRQFGGLGLGLAIVKHLTELHGGTVKAESAG 720

Query: 798 PAKGTLIEIIFPL 810
              G    +  PL
Sbjct: 721 EGMGATFTVNLPL 733


>gi|37523305|ref|NP_926682.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
           7421]
 gi|35214309|dbj|BAC91677.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
           7421]
          Length = 910

 Score =  339 bits (870), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 121/784 (15%), Positives = 244/784 (31%), Gaps = 78/784 (9%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMI-GM-RLCDVSDILHIDPNNHIGDLLK-RQNTWYGK 146
           D  G + E ++   + +G    ++  G  R   ++   + + +      L         +
Sbjct: 126 DCAGMIVEANDAFLQLVGYNREELAAGRVRWAQMTPPEYRERDEQAMAELASTGACRPYE 185

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                 +G    VPI + A  +     E      F +    R   D     +R       
Sbjct: 186 KEYIHKDGR--RVPILIGATLL--EGGERVACFVFDLGGHRRARADLERANERFQLAAKA 241

Query: 207 L-----HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
                     + +              +        +   +   +   ++         L
Sbjct: 242 AGCLVYDWDLEANRVEHAYGLLELLGYNAEEISEPAHLWWAEQIHPDDRERANAEVWAAL 301

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
             +E  +   +        +           +     +   +      S S   +     
Sbjct: 302 QDAEMPNYAIEYRVRNRQGHHINVCDRGVVRRAPDGRAIRVVGCTLDLSESKNLEARVRS 361

Query: 322 TPE----TVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
           T E      +  P   +     G L Y N  +   T        E  G    L       
Sbjct: 362 TDEHYRFLAESIPQIVWTARPDGALDYYNRRWYDYTGLTPQQS-EGWGWQPVLHPEDL-- 418

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
            +  +K      +  +      R    +                 ++  + +   G   +
Sbjct: 419 -DRCLKYWRQAVATGSSYEIEYRFR--RAGDGAYRWHLGRALPMRDREGQIVKWFGTSTD 475

Query: 437 DVDTRINKRKM------EIEVMQLCSILEATSDGIAIINR-------------------- 470
             D +    ++      +  + +  SIL ++ D    ++R                    
Sbjct: 476 IDDQKRAAAELAAREQAQRFLAEAASILASSLDYTVTLDRVAQLTVPLLADWCSVDMVSE 535

Query: 471 EGII-------LSTNRAVS-----KLFGYPVEDILR-----KPFTVFLEQNTPSVMN--- 510
           +G I       +   +A+      + + +   +        +             +    
Sbjct: 536 DGGIEKLVIAHVDAQKALQIRELQRRYPFDPREASGVANVLRTGRSEFYPKITDELLIAI 595

Query: 511 ----HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQ 566
                +L  +        L        +    ++L +      +         D++    
Sbjct: 596 ARSPEHLELLRKAGFSAALLVPLTARGRTFGAITLVMSDSGRRYGRTDLALAEDLACHAA 655

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
                +     A + +  K +FLA VSHE+RTPL AI+G++++++ ++            
Sbjct: 656 IAIDNARLYHQAWEANRIKDEFLATVSHELRTPLNAILGWTQILRRRKLDA---ESQARA 712

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
              I+R+G     ++ D+LD+S+I +GK+ L   P+ L   + EA+  V L +  K I +
Sbjct: 713 LETIERNGRAQNQLIEDILDVSRIITGKLKLDVRPLDLAAVIEEALDSVCLASEAKHIAL 772

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
             +       +  D   ++Q+  N+LSNAI FTP GG+I +          +L VRD+GV
Sbjct: 773 HCTLDAEAASVSGDPARLQQVVWNLLSNAIKFTPEGGRIDVRLA-ADGASALLSVRDSGV 831

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIE 805
           G+T   L    + F Q   S      G GLGL + + +V+ + G     S  P +G L  
Sbjct: 832 GITPEALPYIFERFRQADGSNTRAFGGLGLGLAIVRHLVELHGGTVTAHSDGPGRGALFA 891

Query: 806 IIFP 809
           +  P
Sbjct: 892 VRLP 895



 Score = 94.7 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 38/435 (8%), Positives = 106/435 (24%), Gaps = 27/435 (6%)

Query: 173 REFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP- 231
           RE    RG          +       R + +F  L                I        
Sbjct: 85  RELEQARG-----EAAERHRVETALCRSEARFRQLVAENLIAIGFGDCAGMIVEANDAFL 139

Query: 232 ---PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL--TSEESSLPEQEDFHTINLNQYTKK 286
               + R +     +        +  + ++  +    S  +  P ++++   +  +    
Sbjct: 140 QLVGYNREELAAGRVRWAQMTPPEYRERDEQAMAELASTGACRPYEKEYIHKDGRRVPIL 199

Query: 287 QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANP 346
                L+   + +        H    A  +                 + +       AN 
Sbjct: 200 IGATLLEGGERVACFVFDLGGHRRARADLERANERFQLAAKAAGCLVYDWD----LEANR 255

Query: 347 -----SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401
                  L L  Y + +  E A       +     D       +        +   A  +
Sbjct: 256 VEHAYGLLELLGYNAEEISEPAHLWWA--EQIHPDDRERANAEVWAALQDAEMPNYAIEY 313

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
            ++  + + + +      +       +   G   +  +++  + ++         + E+ 
Sbjct: 314 RVRNRQGHHINVCDRGVVRRAPDGRAIRVVGCTLDLSESKNLEARVRSTDEHYRFLAESI 373

Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
              +     +G +   NR      G   +      +   L          Y  + ++   
Sbjct: 374 PQIVWTARPDGALDYYNRRWYDYTGLTPQQSEGWGWQPVLHPEDLDRCLKYWRQAVATGS 433

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKI 577
              +E        +            +         +  T  DI + K+   +L+  ++ 
Sbjct: 434 SYEIEYRFR-RAGDGAYRWHLGRALPMRDREGQIVKWFGTSTDIDDQKRAAAELAAREQA 492

Query: 578 AEKESSHKSDFLARV 592
               +   S   + +
Sbjct: 493 QRFLAEAASILASSL 507



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 48/410 (11%), Positives = 94/410 (22%), Gaps = 14/410 (3%)

Query: 74  FVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI 133
           + F       +  W     G L   +       G    +  G     V     +D     
Sbjct: 366 YRFLAESIP-QIVWTARPDGALDYYNRRWYDYTGLTPQQSEGWGWQPVLHPEDLDRCLKY 424

Query: 134 GDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193
                   + Y     +   G   Y      ALP+  R  +    + FG           
Sbjct: 425 WRQAVATGSSYEIEYRFRRAGDGAYRWHLGRALPMRDREGQIV--KWFGTSTDIDDQKRA 482

Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253
            A     ++    L E     +S       +         L        +       + +
Sbjct: 483 AAELAAREQAQRFLAEAASILASSLDYTVTLDRVAQLTVPLLADWCSVDMVSEDGGIEKL 542

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
           +          +   L  +  F     +        G  +   K + E L          
Sbjct: 543 VIAHVDAQKALQIRELQRRYPFDPREASGVANVLRTGRSEFYPKITDELLIAIARSPEHL 602

Query: 314 YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL---- 369
                   +   +   P+     + G +               +   E     + +    
Sbjct: 603 ELLRKAGFSAALL--VPLTARGRTFGAITLVMSDSGRRYGRTDLALAEDLACHAAIAIDN 660

Query: 370 --LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
             L       N      +   S       +A L   Q  R   L                
Sbjct: 661 ARLYHQAWEANRIKDEFLATVSHELRTPLNAILGWTQILRRRKLDAESQARALETIERNG 720

Query: 428 MPQNGIEPEDVDTRI---NKRKMEIEVMQLCSILEATSDGIAIINREGII 474
             QN +  + +D       K K+++  + L +++E   D + + +    I
Sbjct: 721 RAQNQLIEDILDVSRIITGKLKLDVRPLDLAAVIEEALDSVCLASEAKHI 770



 Score = 70.8 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 23/208 (11%), Positives = 64/208 (30%), Gaps = 5/208 (2%)

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP-EDV 438
           A + +    ++R    +       +    +  ++     +   Q  +   +      E  
Sbjct: 36  AWERLRRQAAERGISRSEIVEQFARAEEPDDSSLERRVLDLERQNEQLRRELEQARGEAA 95

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
           +    +  +     +   ++      I   +  G+I+  N A  +L GY  E++      
Sbjct: 96  ERHRVETALCRSEARFRQLVAENLIAIGFGDCAGMIVEANDAFLQLVGYNREELAAGRVR 155

Query: 499 V--FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556
                           + E+ S    +  EK  +   K+ + + + I    L      + 
Sbjct: 156 WAQMTPPEYRERDEQAMAELASTGACRPYEKEYI--HKDGRRVPILIGATLLEGGERVAC 213

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSH 584
            + D+   ++ +  L  A +  +  +  
Sbjct: 214 FVFDLGGHRRARADLERANERFQLAAKA 241


>gi|92118136|ref|YP_577865.1| multi-sensor signal transduction histidine kinase [Nitrobacter
           hamburgensis X14]
 gi|91801030|gb|ABE63405.1| multi-sensor signal transduction histidine kinase [Nitrobacter
           hamburgensis X14]
          Length = 614

 Score =  339 bits (870), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 114/387 (29%), Positives = 184/387 (47%), Gaps = 18/387 (4%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           R     + +E  +   +     D I+   R G +   + A   L G P  ++        
Sbjct: 189 RTGTSLLNVEEDRYRLLARNMCDVISRHRRNGAVQFISPAAEALLGVPASELQDHGLFDR 248

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLG---STKEEK------LLSLRIIIKKLP-- 549
           +           L      +  Q++E           + +       + + +  + L   
Sbjct: 249 VHVADRPAYLTALAAAALGNDGQSVEFRLRRDVARASQGEARHSADFIWVEMRCRPLEPA 308

Query: 550 ------FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
                         M DI+E K +++ L  A   AE+  + K+ FLA +SHE+RTPL AI
Sbjct: 309 SAAGTSAEPEVVAVMRDITERKHQEHALDLALTTAERADAAKTRFLATMSHELRTPLNAI 368

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           IGFSE++  +    L   R  EYA  I+ SG  +L +VN +LDISK+ESG   +  EP +
Sbjct: 369 IGFSEMMVQEDALSLDAARRKEYAQLINDSGQHLLSVVNSILDISKMESGNFEILPEPFA 428

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
             E +  + +L+ L A +  I + T    ++P+I  D R+ +QI LN++SNA+ FT  GG
Sbjct: 429 PREVLLNSSNLLALKARDNGIELVTRVPEDLPQITGDPRAFRQIVLNLVSNAVKFTERGG 488

Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
           ++ IS     +  V LRV D GVG+   +L++   PF Q   + Q R EGTGLGL + K+
Sbjct: 489 RVTISARVEGSRMV-LRVMDNGVGIAQEDLKRIGDPFFQAGKTYQRRHEGTGLGLSIVKS 547

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFPL 810
           +V  + G+  + S   +GT + ++ PL
Sbjct: 548 LVALHRGEIDVQSKVEEGTTVTVMLPL 574


>gi|147677757|ref|YP_001211972.1| hypothetical protein PTH_1422 [Pelotomaculum thermopropionicum SI]
 gi|146273854|dbj|BAF59603.1| hypothetical membrane protein [Pelotomaculum thermopropionicum SI]
          Length = 796

 Score =  339 bits (870), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 120/741 (16%), Positives = 245/741 (33%), Gaps = 57/741 (7%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH---IGDLLKRQNTWYGK 146
           D    +  I+       G    +++G+    + + L   P      I   +K        
Sbjct: 90  DTSSKIVYINNGFENITGYGK-ELLGLEYKALEEKLFPLPERRNLDIEKAIKNCQQMNEH 148

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                I      + +    LP+ S     +G     +       +       R    F  
Sbjct: 149 RRSL-ISKDGRVITVKAKILPLKSSKGALTGT----LCLFCETASYLELQNLRQKTHFFL 203

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
                   +   + +  IF+  S       K  V          D   +           
Sbjct: 204 DFTSSCVLAVDNRLRVTIFNAASEKLTGLKKEDVLGRHVTEIFNDYEAENYPIIKTIITG 263

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL----- 321
            +    E    +N    T       + ++  +    +      S S   +E         
Sbjct: 264 ETFHNYEVTLFVNGQMRTLLFDTALITDDGGKVNGAIGIFKDISESKRIEEELKRTVFAY 323

Query: 322 ------TPETVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVD---DIEIAGGLSTLLD 371
                     ++  P+    Y    +  + N     LT Y+  +    ++       +  
Sbjct: 324 SKEKSFMRNVLNNLPLAIITYDRDLMPTFMNKMAEDLTGYRFEEFASSMQNISANEPVFP 383

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
           +   S + A   +       +         TI      ++ ++       +   E     
Sbjct: 384 SSDFSRHLAEAVLS------SGEPIFGEQRTITSRDGTAIPVSLDIHPIYSALREKNGVM 437

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
            I  +  + R ++  + +       IL + +  +  I+    I+  N    +LFG   + 
Sbjct: 438 IIARDIREIREHEHLLYLSK----CILNSLNSAVISIDANYRIIIFNPFAERLFGISADH 493

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
           ++ K                 L   L +       +  +    EE  L +   + +    
Sbjct: 494 VIGKNINEVHLPFLKE--ERMLQNTLEIGTGFQFTEAAIQVKGEEITLLINSAVVRDKDD 551

Query: 552 S--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
           +         DI+E ++ +  +   +++A           A ++HE++ PLTA+ GF+++
Sbjct: 552 NIVGAVAIFQDITELRRTQKAVRERERLAI-----IGQMAAGMAHEVKNPLTAVRGFTQL 606

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           +K +      NP+ + YA  I    +    ++ + L +++          +  SL+  V 
Sbjct: 607 LKEKC---PDNPKLVSYAEIILEEIDRANSVITEFLQLARP----KQPALKRQSLNSLVE 659

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
           E  ++V   A  K I +     +N+P  + D   +KQ+ LN+  NAI   P GG +++ T
Sbjct: 660 EIAAIVSSQAFLKNIKVEYECVDNLPLCMLDRDQIKQVLLNMCQNAIEAMPGGGILVMKT 719

Query: 730 T-HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
               + +EV + + DTG G+   ++EK   PF            GTGLGL ++ +++ A+
Sbjct: 720 GFLPAQKEVFIDINDTGCGIPREQIEKIGVPFFTTKAD------GTGLGLSISYSIIGAH 773

Query: 789 MGKFYIFSTPAKGTLIEIIFP 809
            G+  + S   KGT   I  P
Sbjct: 774 KGRVEVDSKEGKGTKFRIYLP 794



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 44/394 (11%), Positives = 104/394 (26%), Gaps = 32/394 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D    +   +    K  G     ++G  + ++ +    +    I  ++    T++    
Sbjct: 213 VDNRLRVTIFNAASEKLTGLKKEDVLGRHVTEIFNDYEAENYPIIKTII-TGETFHNYEV 271

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
              + G    +  D A   I     + +G    GI              KR    +S   
Sbjct: 272 TLFVNGQMRTLLFDTAL--ITDDGGKVNGA--IGIFKDISESKRIEEELKRTVFAYSKEK 327

Query: 209 EIKKGHSSVEKEKYDIFSQQS-PPPHLRMKNKVSSLT--------------EYYAHKDDV 253
              +   +        + +   P    +M   ++                 E      D 
Sbjct: 328 SFMRNVLNNLPLAIITYDRDLMPTFMNKMAEDLTGYRFEEFASSMQNISANEPVFPSSDF 387

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
            +     +L+S E    EQ    + +            + +  +E    +          
Sbjct: 388 SRHLAEAVLSSGEPIFGEQRTITSRDGTAIPVSLDIHPIYSALREKNGVMIIARDIREIR 447

Query: 314 YFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
             +    L+   ++        + ++  +   NP    L    +   I        L   
Sbjct: 448 EHEHLLYLSKCILNSLNSAVISIDANYRIIIFNPFAERLFGISADHVIGKNINEVHL--- 504

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
                    +  ML  +             IQ   E    +        ++    +    
Sbjct: 505 -----PFLKEERMLQNTLEIGTGFQFTEAAIQVKGEEITLLINSAV-VRDKDDNIVGAVA 558

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
           I  +  + R  ++ +  E  +L +I+   + G+A
Sbjct: 559 IFQDITELRRTQKAVR-ERERL-AIIGQMAAGMA 590



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/192 (10%), Positives = 57/192 (29%), Gaps = 16/192 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           IDA+  +   +    +  G  A  +IG  + +V  +  +     + + L+    +     
Sbjct: 470 IDANYRIIIFNPFAERLFGISADHVIGKNINEV-HLPFLKEERMLQNTLEIGTGFQFTEA 528

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK----- 203
              ++G    + + + +  +  ++    G     I          +   +  ++      
Sbjct: 529 AIQVKGE--EITLLINSAVVRDKDDNIVGA--VAIFQDITELRRTQKAVRERERLAIIGQ 584

Query: 204 -FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
             + +    K   +  +    +  ++ P        K+ S  E    + D   +     L
Sbjct: 585 MAAGMAHEVKNPLTAVRGFTQLLKEKCPDNP-----KLVSYAEIILEEIDRANSVITEFL 639

Query: 263 TSEESSLPEQED 274
                  P  + 
Sbjct: 640 QLARPKQPALKR 651



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 40/112 (35%), Gaps = 4/112 (3%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE--DILRKPFTVFLEQ 503
           +ME E+  L  +LE    G+ + +    I+  N     + GY  E   +  K     L  
Sbjct: 67  RMEGEINWLRGVLEGLPLGVVVFDTSSKIVYINNGFENITGYGKELLGLEYKALEEKLFP 126

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555
                       I +   +Q  E      +K+ ++++++  I  L  S    
Sbjct: 127 LPERRNLDIEKAIKN--CQQMNEHRRSLISKDGRVITVKAKILPLKSSKGAL 176


>gi|126660147|ref|ZP_01731266.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110]
 gi|126618590|gb|EAZ89340.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110]
          Length = 946

 Score =  339 bits (870), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 94/392 (23%), Positives = 176/392 (44%), Gaps = 19/392 (4%)

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
             G    ++       ++     +   ++E+    +   + +G ++  N+  S+  G  +
Sbjct: 413 FAGKTAAELQREQAIAELRNSEERYRYLVESIPQLVWTADSQGKVMDVNQRWSEFTGLTL 472

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
             +  + +   +     + +N     I++ +     +        +            L 
Sbjct: 473 VQVQTQGWETVVHPEDITTLNRKW--IIAQENATNYQAEGRMRRNDGVYRWHLHQAVPLK 530

Query: 550 FSSC----YSLTMHDISEWKQEKNKLSHA-------KKIAEKESSHKSDFLARVSHEIRT 598
            +      +  T  DI   KQ + +           ++ AE+ +  K +FL+ +SHE+R+
Sbjct: 531 NNRGKIIKWFGTATDIENAKQLEQQRLQLLEQERTVREKAERANRIKDEFLSILSHELRS 590

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
           PL  I+G++++++ ++   L   +  E    I+R+  L   +++DLLD++KI  GK+ L+
Sbjct: 591 PLNPILGWTQLLQTKK---LEEQQVEEALAVIERNVKLQTQLIDDLLDMAKILRGKITLN 647

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718
             PV L   +  AI +V++ A  K I ++ + +NN   I  D   ++QI  N+LSNAI F
Sbjct: 648 MTPVDLSSTIKAAIEVVRMAAERKNISLKVNLSNNC-YIKGDQGRIQQIIWNLLSNAIKF 706

Query: 719 TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
           TP GG+++I+     N++V + V DTG G+    L    + F Q   S      G GLGL
Sbjct: 707 TPEGGKVMINLEQV-NQQVQITVTDTGKGIDPEFLPHIFESFRQEDVSITRHYGGLGLGL 765

Query: 779 PLAKAMVDANMGKFYIFS-TPAKGTLIEIIFP 809
            + K +VDA+ G     S    KG    I  P
Sbjct: 766 SIVKYLVDAHGGTIVADSLGEDKGATFLITLP 797



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/193 (13%), Positives = 59/193 (30%), Gaps = 13/193 (6%)

Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
                A L  I +  E  L    I   ++ Q         ++  + + +   + ++  V 
Sbjct: 84  IRDIGAGLRIILFVSEGILISHLIGNLRSAQEKIRKNFEKLQVTETEIKDLNQTLQRRVN 143

Query: 453 QLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVE--------DILRKPFTVFLEQ 503
           +L ++ +     IAI  + +  ++  N A S L   P               P     + 
Sbjct: 144 ELQTLFDTIPINIAIAEDIDCRVVRLNPAFSHLLKMPKNANASAVMLSEHPDPPFTVYQN 203

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMH 559
                  +     +S    +  +       K++K+ +L      L               
Sbjct: 204 GQRLTGENLPQMYVSKHGVELRDIEIEIVRKDKKVFNLYGHAIPLFDELGNPRGSVGVYV 263

Query: 560 DISEWKQEKNKLS 572
           D+S+ K+ +  L 
Sbjct: 264 DMSDRKRIEMALY 276



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/183 (12%), Positives = 58/183 (31%), Gaps = 4/183 (2%)

Query: 54  FTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM 113
              + Q   +     +SE  + +       +  W  D+ G + ++++   +  G    ++
Sbjct: 417 TAAELQREQAIAELRNSEERYRYLVESIP-QLVWTADSQGKVMDVNQRWSEFTGLTLVQV 475

Query: 114 IGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNR 173
                  V     I   N    ++ ++N    +          +Y      A+P+ +   
Sbjct: 476 QTQGWETVVHPEDITTLNRKW-IIAQENATNYQAEGRMRRNDGVYRWHLHQAVPLKNNRG 534

Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH 233
           +    + FG                +L ++   + E  +  + ++ E   I S +   P 
Sbjct: 535 KII--KWFGTATDIENAKQLEQQRLQLLEQERTVREKAERANRIKDEFLSILSHELRSPL 592

Query: 234 LRM 236
             +
Sbjct: 593 NPI 595


>gi|186683828|ref|YP_001867024.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186466280|gb|ACC82081.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 1888

 Score =  339 bits (870), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 118/837 (14%), Positives = 262/837 (31%), Gaps = 132/837 (15%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            +D      +I++ L +  G      IG  + +    +          +L        +  
Sbjct: 813  VDNQLRFVQINQVLAEINGISQEAHIGKTIHEALPKIASVVEPFYQQVLLTGEPILNQEL 872

Query: 149  LWP-IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK---- 203
                I+  ++     ++  PI   +   SG  G  +V ++ +    R     L ++    
Sbjct: 873  SAASIKQPDIIRHFLVSYFPIPGEDDRLSGV-GTVLVEISELQAALRERQAALRERKHVE 931

Query: 204  -FSHLHEIKKGHSSVEKE-----KYDIFSQQSPPPHLRMKNKVSSLTE-----------Y 246
                L   +  +                   S     +    +                +
Sbjct: 932  QELRLANERLQYLLTSSPVVIYSSKKTLGNFSTTFISKNVKAMVGYEAQEFVENPNFWLH 991

Query: 247  YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE----Y 302
            + H +D+    +      E+     +  +   +   +   +    +++ +    E    +
Sbjct: 992  HVHPEDIELISEKFSQLVEQEYTSYEYRWLHADGTYHWFYEKMRLIRDETGNPIECVGYW 1051

Query: 303  LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIE 361
                +          G        +  P   F     GN+ Y N  +  ++   ++++  
Sbjct: 1052 TDINDAKLAELALQTGRQRYQLLAETSPACIFHTDVDGNVLYFNQRWSEISGC-NLEESL 1110

Query: 362  IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
              G    +    +           + +            H    +    + +      + 
Sbjct: 1111 GTGWTKAVHPDDREQLLLTWNQARVAKV------MYKYEHRFLCDDSTVVWVICQALPEF 1164

Query: 422  NQFPENMPQNGIEPEDVDTRINKRK----MEIEV-----------------------MQL 454
                E     G   +  + ++ +       E E                         +L
Sbjct: 1165 RDDGEIKGYIGTITDITERKLAEEALRESAERERAIAQVIQRMRQTLDLETIFAATTQEL 1224

Query: 455  CSILEATSDGIAIINREGIILSTNRA----VSKLFGYPVED--------ILRKPFTVFLE 502
              +L      +   N +      + +       L      D           +     L+
Sbjct: 1225 RQVLNCDRVVVYRFNPQWNGEFVSESVGNGWISLIEEHNNDPNLTEGVLQQGRCLAKILD 1284

Query: 503  QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT----- 557
                   +  +  I      Q      +      +     I + +   +  Y +      
Sbjct: 1285 SGDNQAEDADMQAIQDGIYAQGATFRCVPDIYNAEFHPSYISLLERFQAKAYIIVPILYG 1344

Query: 558  -----------MHDISEWKQEK----------------------------NKLSHAKKIA 578
                         D  +WK  +                              L  A   A
Sbjct: 1345 SQIWGLLASYQNSDSRQWKPGEINIVVQIGNQLGVALQQAQLLAQTQRQSQALQEAVITA 1404

Query: 579  EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
            +  +  KS+FLA +SHE+RTPL AI+GF++++ + R        + +    I+R+G  +L
Sbjct: 1405 DAANRAKSEFLANMSHELRTPLNAILGFTQIMSHDRALST---EHQQNLAIINRAGEHLL 1461

Query: 639  DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-I 697
            +++ND+L++SKIE+G++ L+     L   +     +++  A  K + +   + + +P+ I
Sbjct: 1462 NLINDILEMSKIEAGRITLNLNSFDLIRLLENLEEMLRFRATSKGLELNFEYTSYLPQYI 1521

Query: 698  LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE--------VILRVRDTGVGMT 749
             AD   ++Q+ LN+L NAI FT +G ++++     +  E        +   V DTG G+ 
Sbjct: 1522 QADESKLRQVLLNLLGNAIKFTDTG-RVMLRVAMENMGEKILPHPPHLFFEVTDTGRGIA 1580

Query: 750  NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
              E+    + FGQ    ++ + +GTGLGL +++  V+   G   + S   +G+    
Sbjct: 1581 PQEINLLFEAFGQTETGRKSQ-QGTGLGLAISRKYVELMGGDISVTSIIGEGSTFAF 1636



 Score = 84.3 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 36/272 (13%), Positives = 80/272 (29%), Gaps = 24/272 (8%)

Query: 324 ETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
             +D+      V   G++ Y    F      ++ + +       TL    K         
Sbjct: 86  GVLDELSEEVNVCDLGDVDYITQPF------QAKEVLLRIQNQLTL-QRLKKQLKEQNSQ 138

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
           +     +R  +A    L   Q                    P        E    +  + 
Sbjct: 139 LQEEIKERQRVAVELNLRNQQIE-----------EIFTEIPPSLSKAFCREVYQNERLLV 187

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
           +  ++    Q   ++E + D I  ++ +G+I   N AV +++GY  ++++ +    F+  
Sbjct: 188 EAALKKSESQYRHLVETSQDMIWSVDIDGLITFVNPAVKQIYGYEPQEMIGRTLIDFISP 247

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS----LTMH 559
              +        +L        +  T    K+  LL L      L            T  
Sbjct: 248 QQVTKDKVVFERVLHGKP--IFQHETTCVAKDGTLLYLMFNAIALRNEEGLVIGMTGTAS 305

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
           +I++ +  +  L  +       +   +     
Sbjct: 306 NITQRRGIEKLLQESAIKLRNHNLVLTQLAQN 337



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 48/589 (8%), Positives = 140/589 (23%), Gaps = 95/589 (16%)

Query: 72   NTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN 131
            + F   P P  +        +    E+++   +  G    ++I     +++  ++ +  N
Sbjct: 506  SAFRSSPDPIALITV----PNKRFVEVNDSFCRFFGYSRSQVIDRTDQELNIWVNPEEYN 561

Query: 132  HIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF-GIVHVNRVD 190
             +  +L++               +       L+A  I     E  G     G        
Sbjct: 562  FLTQMLQKTKAIRNYEIDVCTC-SGEIRTTLLSAEMI-----EIDGKCYVLGTAKDITER 615

Query: 191  NDPRALGKRLDKKFSHLHEIKK-------------------------------------- 212
                   + L      +                                           
Sbjct: 616  KQAENESRLLLLTTQAITRANDVNSSLALVLRLICHTIGWDFGEAWIPNEDSSVLEHSLG 675

Query: 213  --GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD----------DVLKTEKYP 260
              G  S  +E          P  + +  +V    E    +D             +  K  
Sbjct: 676  WYGEQSNLEEFCRHSQIVKFPLGVGLPGRVWQNQEPEWIEDVSEVTEPIFLRSQQAAKVG 735

Query: 261  LLTS-EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR-NHPSLSAYFDEG 318
            L        L   +    +   + +       L          L       +L       
Sbjct: 736  LKAGFGVPILAGNKVLAVLVFFKRSSVLVDRRLLLLVNAVAAQLGGLIERKTLEQELALR 795

Query: 319  ENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
            E          P+   +  +       N     +    S +          L      S 
Sbjct: 796  EARLNAFFTGAPVGMNIVDNQLRFVQINQVLAEINGI-SQEAHIGKTIHEAL--PKIASV 852

Query: 378  NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN------ 431
                   +L   +       +     Q +      +++ P    +     +         
Sbjct: 853  VEPFYQQVLLTGEPILNQELSAASIKQPDIIRHFLVSYFPIPGEDDRLSGVGTVLVEISE 912

Query: 432  ------GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII-----LSTNRA 480
                    +    + +  ++++ +   +L  +L ++   + I + +  +        ++ 
Sbjct: 913  LQAALRERQAALRERKHVEQELRLANERLQYLLTSSP--VVIYSSKKTLGNFSTTFISKN 970

Query: 481  VSKLFGYPVEDILRKP--FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
            V  + GY  ++ +  P  +   +      +++   ++++  +              +   
Sbjct: 971  VKAMVGYEAQEFVENPNFWLHHVHPEDIELISEKFSQLVEQEYTS---YEYRWLHADGTY 1027

Query: 539  LSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
                  ++ +   +           DI++ K  +  L   ++  +  + 
Sbjct: 1028 HWFYEKMRLIRDETGNPIECVGYWTDINDAKLAELALQTGRQRYQLLAE 1076



 Score = 70.8 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 13/160 (8%), Positives = 43/160 (26%), Gaps = 5/160 (3%)

Query: 86   TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQNTWY 144
             ++ D  G +   ++   +  G    + +G            +            +  + 
Sbjct: 1082 IFHTDVDGNVLYFNQRWSEISGCNLEESLGTGWTKAVHPDDREQLLLTWNQARVAKVMYK 1141

Query: 145  GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
             +      + T   V +   ALP +  + E  G+   G +             +   ++ 
Sbjct: 1142 YEHRFLCDDST--VVWVICQALPEFRDDGEIKGY--IGTITDITERKLAEEALRESAERE 1197

Query: 205  SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244
              + ++ +        +    +       +   ++V    
Sbjct: 1198 RAIAQVIQRMRQTLDLETIFAATTQELRQVLNCDRVVVYR 1237



 Score = 65.0 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 44/133 (33%), Gaps = 1/133 (0%)

Query: 453 QLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
           +L S   ++ D IA+I       +  N +  + FGY    ++ +          P   N 
Sbjct: 503 KLASAFRSSPDPIALITVPNKRFVEVNDSFCRFFGYSRSQVIDRTDQELNIWVNPEEYNF 562

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571
               +      +  E      + E +   L   + ++        T  DI+E KQ +N+ 
Sbjct: 563 LTQMLQKTKAIRNYEIDVCTCSGEIRTTLLSAEMIEIDGKCYVLGTAKDITERKQAENES 622

Query: 572 SHAKKIAEKESSH 584
                  +  +  
Sbjct: 623 RLLLLTTQAITRA 635



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 40/428 (9%), Positives = 100/428 (23%), Gaps = 78/428 (18%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI-GDLLKRQNTWY 144
            W++D  G +  ++  + +  G    +MIG  L D      +  +  +   +L  +  + 
Sbjct: 209 IWSVDIDGLITFVNPAVKQIYGYEPQEMIGRTLIDFISPQQVTKDKVVFERVLHGKPIFQ 268

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL---- 200
            +TT    +GT LY+     A+ + +      G    G             L +      
Sbjct: 269 HETTCVAKDGTLLYL--MFNAIALRNEEGLVIGMT--GTASNITQRRGIEKLLQESAIKL 324

Query: 201 -----------DKKFSHLHEIKKGHSSVEKEKYDIFSQQSP------------------P 231
                        +  +  ++K     + +        +                     
Sbjct: 325 RNHNLVLTQLAQNQILYQGDLKAALGKITETAVKNIGMERASVWLYDETGLKIECFDLFE 384

Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDF---------------- 275
                 ++   L+E           +  P+   +  + P   +F                
Sbjct: 385 GSRNQHSEGLVLSEADYPAYFAALQQDQPIAADDAHTDPRIREFSPSYSRLNITSILYTP 444

Query: 276 -------------HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
                          + +  +   +     ++        L  +      A     E   
Sbjct: 445 IRQEGKTVGVLCLEAVGVAHHWTLEDQNFARSLGNLVSLVLEAKERQRAEAARRASEEKL 504

Query: 323 PETVDKCPIPFFV--YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
                  P P  +    +      N SF     Y     I+       +   P+      
Sbjct: 505 ASAFRSSPDPIALITVPNKRFVEVNDSFCRFFGYSRSQVIDRTDQELNIWVNPE----EY 560

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
                + +  +        + T     E    +      + +         G   +  + 
Sbjct: 561 NFLTQMLQKTKAIRNYEIDVCTCS--GEIRTTLLSAEMIEIDGK---CYVLGTAKDITER 615

Query: 441 RINKRKME 448
           +  + +  
Sbjct: 616 KQAENESR 623



 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/166 (10%), Positives = 55/166 (33%), Gaps = 15/166 (9%)

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
           + +  ++++ +   +L +       G+ I++ +   +  N+ ++++ G   E  + K   
Sbjct: 784 ERKTLEQELALREARLNAFFTGAPVGMNIVDNQLRFVQINQVLAEINGISQEAHIGKTIH 843

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE----KLLSLRIIIKKLPFSS-- 552
             L     SV+  +  ++L       L +    ++ ++    +   +             
Sbjct: 844 EAL-PKIASVVEPFYQQVLLTGEP-ILNQELSAASIKQPDIIRHFLVSYFPIPGEDDRLS 901

Query: 553 CYSLTMHDIS-------EWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
                + +IS       E +    +  H ++     +      L  
Sbjct: 902 GVGTVLVEISELQAALRERQAALRERKHVEQELRLANERLQYLLTS 947


>gi|254713753|ref|ZP_05175564.1| PAS domain S-box-containing protein [Brucella ceti M644/93/1]
 gi|254717189|ref|ZP_05179000.1| PAS domain S-box-containing protein [Brucella ceti M13/05/1]
 gi|261219005|ref|ZP_05933286.1| multi-sensor signal transduction histidine kinase [Brucella ceti
           M13/05/1]
 gi|261321495|ref|ZP_05960692.1| multi-sensor signal transduction histidine kinase [Brucella ceti
           M644/93/1]
 gi|260924094|gb|EEX90662.1| multi-sensor signal transduction histidine kinase [Brucella ceti
           M13/05/1]
 gi|261294185|gb|EEX97681.1| multi-sensor signal transduction histidine kinase [Brucella ceti
           M644/93/1]
          Length = 783

 Score =  339 bits (870), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 123/543 (22%), Positives = 227/543 (41%), Gaps = 54/543 (9%)

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEI 362
                        + +      + +     + +       Y + S   +  Y++ D +  
Sbjct: 241 QAARAREADDLSGQIQRRIDMALARGRCGLWDWDMARGRIYWSRSMYEMLGYEAQDAVLP 300

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
            G ++ +++       +  +      +         R+  ++    + + M       + 
Sbjct: 301 FGDVAAIINEEDGDLYSIAEQA----AAGDISHVD-RVFRMRHADGSWVWMRVRAEIASE 355

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
                +   GI  +  +     ++     M++   +E  S+   + +    ++  N   S
Sbjct: 356 GD---LHLVGIAFDVSEQHRFAQQTAEADMRIREAIENISEAFVLWDANNRLVMANSKFS 412

Query: 483 KLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
           +  G PV  +    P         P      +    +    QT E+       + + L +
Sbjct: 413 EYAGLPVWTLKPGVPRNEVDAHTRPFTFERRMANEHNRAGGQTFERQL----SDGRWLQV 468

Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH---------------------------- 573
               ++            DI++ K  + +L                              
Sbjct: 469 N---ERRTQDGGMVSIGTDITQLKLHQERLVDSERRLMATVHDLSIARKGERDRVRELSE 525

Query: 574 -------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
                   K+ AE  +  KS+FLA +SHE+RTPL AIIGFSE+I+   FGPLG+ RY EY
Sbjct: 526 LARKYSLEKERAEAANRAKSEFLANMSHELRTPLNAIIGFSEMIQAGTFGPLGSDRYEEY 585

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
            N I  SGN +L+++ND+LD+SKIE+G  +L  E + L   ++E + ++ L A EK I +
Sbjct: 586 INDIHTSGNFLLNVINDILDMSKIEAGHFSLDREEIDLCPLINETVRIISLQAEEKNIAV 645

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
            T   + +  + AD R++KQ+ +N+LSNA+ FT  GG+I +    T    + + ++DTGV
Sbjct: 646 ETRIEDAM-ELYADRRAIKQVLINLLSNAVKFTSYGGRITVRARKT-GAALFMTIQDTGV 703

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+    L K  +PF Q+ N       G+GLGL +++++ + + G   I ST   GT++ +
Sbjct: 704 GIPKSALRKIGQPFEQVENQFTKTHTGSGLGLAISRSLAELHGGWLRIRSTERVGTVVSV 763

Query: 807 IFP 809
             P
Sbjct: 764 CIP 766



 Score = 41.2 bits (95), Expect = 0.71,   Method: Composition-based stats.
 Identities = 30/254 (11%), Positives = 61/254 (24%), Gaps = 18/254 (7%)

Query: 86  TWNID-AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN--HIGDLLKRQNT 142
            W+ D A G +   S  + + +G  A   + +   DV+ I++ +  +   I +     + 
Sbjct: 270 LWDWDMARGRI-YWSRSMYEMLGYEAQDAV-LPFGDVAAIINEEDGDLYSIAEQAAAGDI 327

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
            +             +V + + A      +    G     I       +         D 
Sbjct: 328 SHVDRVFRMRHADGSWVWMRVRAEIASEGDLHLVG-----IAFDVSEQHRFAQQTAEADM 382

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
           +     E       +      +    S          V +L       +    T      
Sbjct: 383 RIREAIENISEAFVLWDANNRLVMANSKFSEY-AGLPVWTLKPGVPRNEVDAHTRP---F 438

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG---- 318
           T E     E          +      +  +     +    +S     +      E     
Sbjct: 439 TFERRMANEHNRAGGQTFERQLSDGRWLQVNERRTQDGGMVSIGTDITQLKLHQERLVDS 498

Query: 319 ENLTPETVDKCPIP 332
           E     TV    I 
Sbjct: 499 ERRLMATVHDLSIA 512


>gi|17987608|ref|NP_540242.1| sensory transduction protein kinase [Brucella melitensis bv. 1 str.
           16M]
 gi|23501503|ref|NP_697630.1| sensory box histidine kinase [Brucella suis 1330]
 gi|62289578|ref|YP_221371.1| histidine kinase [Brucella abortus bv. 1 str. 9-941]
 gi|148559697|ref|YP_001258609.1| sensory box histidine kinase [Brucella ovis ATCC 25840]
 gi|161618591|ref|YP_001592478.1| multi-sensor signal transduction histidine kinase [Brucella canis
           ATCC 23365]
 gi|225852141|ref|YP_002732374.1| PAS domain S-box-containing protein [Brucella melitensis ATCC
           23457]
 gi|254688899|ref|ZP_05152153.1| PAS domain S-box-containing protein [Brucella abortus bv. 6 str.
           870]
 gi|254697031|ref|ZP_05158859.1| PAS domain S-box-containing protein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254701410|ref|ZP_05163238.1| PAS domain S-box-containing protein [Brucella suis bv. 5 str. 513]
 gi|254703955|ref|ZP_05165783.1| PAS domain S-box-containing protein [Brucella suis bv. 3 str. 686]
 gi|254707666|ref|ZP_05169494.1| PAS domain S-box-containing protein [Brucella pinnipedialis
           M163/99/10]
 gi|254709750|ref|ZP_05171561.1| PAS domain S-box-containing protein [Brucella pinnipedialis B2/94]
 gi|254729930|ref|ZP_05188508.1| PAS domain S-box-containing protein [Brucella abortus bv. 4 str.
           292]
 gi|256031240|ref|ZP_05444854.1| PAS domain S-box-containing protein [Brucella pinnipedialis
           M292/94/1]
 gi|256044318|ref|ZP_05447222.1| PAS domain S-box-containing protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256113155|ref|ZP_05454032.1| PAS domain S-box-containing protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|256254648|ref|ZP_05460184.1| PAS domain S-box-containing protein [Brucella ceti B1/94]
 gi|256257147|ref|ZP_05462683.1| PAS domain S-box-containing protein [Brucella abortus bv. 9 str.
           C68]
 gi|256264347|ref|ZP_05466879.1| sensory box histidine kinase [Brucella melitensis bv. 2 str. 63/9]
 gi|256369055|ref|YP_003106563.1| sensory box histidine kinase [Brucella microti CCM 4915]
 gi|260168376|ref|ZP_05755187.1| sensory box histidine kinase [Brucella sp. F5/99]
 gi|260563672|ref|ZP_05834158.1| sensory box histidine kinase [Brucella melitensis bv. 1 str. 16M]
 gi|260566796|ref|ZP_05837266.1| sensory box histidine kinase [Brucella suis bv. 4 str. 40]
 gi|260754384|ref|ZP_05866732.1| multi-sensor signal transduction histidine kinase [Brucella abortus
           bv. 6 str. 870]
 gi|260757603|ref|ZP_05869951.1| multi-sensor signal transduction histidine kinase [Brucella abortus
           bv. 4 str. 292]
 gi|260761429|ref|ZP_05873772.1| multi-sensor signal transduction histidine kinase [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|260883409|ref|ZP_05895023.1| multi-sensor signal transduction histidine kinase [Brucella abortus
           bv. 9 str. C68]
 gi|261221823|ref|ZP_05936104.1| multi-sensor signal transduction histidine kinase [Brucella ceti
           B1/94]
 gi|261315163|ref|ZP_05954360.1| multi-sensor signal transduction histidine kinase [Brucella
           pinnipedialis M163/99/10]
 gi|261317281|ref|ZP_05956478.1| multi-sensor signal transduction histidine kinase [Brucella
           pinnipedialis B2/94]
 gi|261751949|ref|ZP_05995658.1| multi-sensor signal transduction histidine kinase [Brucella suis
           bv. 5 str. 513]
 gi|261754607|ref|ZP_05998316.1| multi-sensor signal transduction histidine kinase [Brucella suis
           bv. 3 str. 686]
 gi|261757836|ref|ZP_06001545.1| sensory box histidine kinase [Brucella sp. F5/99]
 gi|265988319|ref|ZP_06100876.1| multi-sensor signal transduction histidine kinase [Brucella
           pinnipedialis M292/94/1]
 gi|265990730|ref|ZP_06103287.1| multi-sensor signal transduction histidine kinase [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|265994568|ref|ZP_06107125.1| multi-sensor signal transduction histidine kinase [Brucella
           melitensis bv. 3 str. Ether]
 gi|297247993|ref|ZP_06931711.1| two-component system, PleD family, sensor histidine kinase PleC
           [Brucella abortus bv. 5 str. B3196]
 gi|17983316|gb|AAL52506.1| sensory transduction protein kinase [Brucella melitensis bv. 1 str.
           16M]
 gi|23347410|gb|AAN29545.1| sensory box histidine kinase [Brucella suis 1330]
 gi|62195710|gb|AAX74010.1| histidine kinase [Brucella abortus bv. 1 str. 9-941]
 gi|148370954|gb|ABQ60933.1| sensory box histidine kinase [Brucella ovis ATCC 25840]
 gi|161335402|gb|ABX61707.1| multi-sensor signal transduction histidine kinase [Brucella canis
           ATCC 23365]
 gi|225640506|gb|ACO00420.1| PAS domain S-box-containing protein [Brucella melitensis ATCC
           23457]
 gi|255999215|gb|ACU47614.1| sensory box histidine kinase [Brucella microti CCM 4915]
 gi|260153688|gb|EEW88780.1| sensory box histidine kinase [Brucella melitensis bv. 1 str. 16M]
 gi|260156314|gb|EEW91394.1| sensory box histidine kinase [Brucella suis bv. 4 str. 40]
 gi|260667921|gb|EEX54861.1| multi-sensor signal transduction histidine kinase [Brucella abortus
           bv. 4 str. 292]
 gi|260671861|gb|EEX58682.1| multi-sensor signal transduction histidine kinase [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|260674492|gb|EEX61313.1| multi-sensor signal transduction histidine kinase [Brucella abortus
           bv. 6 str. 870]
 gi|260872937|gb|EEX80006.1| multi-sensor signal transduction histidine kinase [Brucella abortus
           bv. 9 str. C68]
 gi|260920407|gb|EEX87060.1| multi-sensor signal transduction histidine kinase [Brucella ceti
           B1/94]
 gi|261296504|gb|EEY00001.1| multi-sensor signal transduction histidine kinase [Brucella
           pinnipedialis B2/94]
 gi|261304189|gb|EEY07686.1| multi-sensor signal transduction histidine kinase [Brucella
           pinnipedialis M163/99/10]
 gi|261737820|gb|EEY25816.1| sensory box histidine kinase [Brucella sp. F5/99]
 gi|261741702|gb|EEY29628.1| multi-sensor signal transduction histidine kinase [Brucella suis
           bv. 5 str. 513]
 gi|261744360|gb|EEY32286.1| multi-sensor signal transduction histidine kinase [Brucella suis
           bv. 3 str. 686]
 gi|262765681|gb|EEZ11470.1| multi-sensor signal transduction histidine kinase [Brucella
           melitensis bv. 3 str. Ether]
 gi|263001514|gb|EEZ14089.1| multi-sensor signal transduction histidine kinase [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|263094621|gb|EEZ18419.1| sensory box histidine kinase [Brucella melitensis bv. 2 str. 63/9]
 gi|264660516|gb|EEZ30777.1| multi-sensor signal transduction histidine kinase [Brucella
           pinnipedialis M292/94/1]
 gi|297175162|gb|EFH34509.1| two-component system, PleD family, sensor histidine kinase PleC
           [Brucella abortus bv. 5 str. B3196]
 gi|326408641|gb|ADZ65706.1| PAS domain S-box-containing protein [Brucella melitensis M28]
 gi|326538363|gb|ADZ86578.1| PAS domain S-box-containing protein [Brucella melitensis M5-90]
          Length = 783

 Score =  339 bits (870), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 123/543 (22%), Positives = 227/543 (41%), Gaps = 54/543 (9%)

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEI 362
                        + +      + +     + +       Y + S   +  Y++ D +  
Sbjct: 241 QAARAREADDLSGQIQRRIDMALARGRCGLWDWDMARGRIYWSRSMYEMLGYEAQDAVLP 300

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
            G ++ +++       +  +      +         R+  ++    + + M       + 
Sbjct: 301 FGDVAAIINEEDGDLYSIAEQA----AAGDISHVD-RVFRMRHADGSWVWMRVRAEIASE 355

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
                +   GI  +  +     ++     M++   +E  S+   + +    ++  N   S
Sbjct: 356 GD---LHLVGIAFDVSEQHRFAQQTAEADMRIREAIENISEAFVLWDANNRLVMANSKFS 412

Query: 483 KLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
           +  G PV  +    P         P      +    +    QT E+       + + L +
Sbjct: 413 EYAGLPVWTLKPGVPRNEVDAHTRPFTFERRMANEHNRAGGQTFERQL----SDGRWLQV 468

Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH---------------------------- 573
               ++            DI++ K  + +L                              
Sbjct: 469 N---ERRTQDGGMVSIGTDITQLKLHQERLVDSERRLMATVHDLSIARKGERDRVRELSE 525

Query: 574 -------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
                   K+ AE  +  KS+FLA +SHE+RTPL AIIGFSE+I+   FGPLG+ RY EY
Sbjct: 526 LARKYSLEKERAEAANRAKSEFLANMSHELRTPLNAIIGFSEMIQAGTFGPLGSDRYEEY 585

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
            N I  SGN +L+++ND+LD+SKIE+G  +L  E + L   ++E + ++ L A EK I +
Sbjct: 586 INDIHTSGNFLLNVINDILDMSKIEAGHFSLDREEIDLCPLINETVRIISLQAEEKNIAV 645

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
            T   + +  + AD R++KQ+ +N+LSNA+ FT  GG+I +    T    + + ++DTGV
Sbjct: 646 ETRIEDAM-ELYADRRAIKQVLINLLSNAVKFTSYGGRITVRARKT-GAALFMTIQDTGV 703

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+    L K  +PF Q+ N       G+GLGL +++++ + + G   I ST   GT++ +
Sbjct: 704 GIPKSALRKIGQPFEQVENQFTKTHTGSGLGLAISRSLAELHGGWLRIRSTERVGTVVSV 763

Query: 807 IFP 809
             P
Sbjct: 764 CIP 766



 Score = 41.2 bits (95), Expect = 0.71,   Method: Composition-based stats.
 Identities = 30/254 (11%), Positives = 61/254 (24%), Gaps = 18/254 (7%)

Query: 86  TWNID-AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN--HIGDLLKRQNT 142
            W+ D A G +   S  + + +G  A   + +   DV+ I++ +  +   I +     + 
Sbjct: 270 LWDWDMARGRI-YWSRSMYEMLGYEAQDAV-LPFGDVAAIINEEDGDLYSIAEQAAAGDI 327

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
            +             +V + + A      +    G     I       +         D 
Sbjct: 328 SHVDRVFRMRHADGSWVWMRVRAEIASEGDLHLVG-----IAFDVSEQHRFAQQTAEADM 382

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
           +     E       +      +    S          V +L       +    T      
Sbjct: 383 RIREAIENISEAFVLWDANNRLVMANSKFSEY-AGLPVWTLKPGVPRNEVDAHTRP---F 438

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG---- 318
           T E     E          +      +  +     +    +S     +      E     
Sbjct: 439 TFERRMANEHNRAGGQTFERQLSDGRWLQVNERRTQDGGMVSIGTDITQLKLHQERLVDS 498

Query: 319 ENLTPETVDKCPIP 332
           E     TV    I 
Sbjct: 499 ERRLMATVHDLSIA 512


>gi|254693380|ref|ZP_05155208.1| PAS domain S-box-containing protein [Brucella abortus bv. 3 str.
           Tulya]
 gi|261213630|ref|ZP_05927911.1| multi-sensor signal transduction histidine kinase [Brucella abortus
           bv. 3 str. Tulya]
 gi|260915237|gb|EEX82098.1| multi-sensor signal transduction histidine kinase [Brucella abortus
           bv. 3 str. Tulya]
          Length = 783

 Score =  339 bits (870), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 123/543 (22%), Positives = 227/543 (41%), Gaps = 54/543 (9%)

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEI 362
                        + +      + +     + +       Y + S   +  Y++ D +  
Sbjct: 241 QAARAREADDLSGQIQRRIDMALARGRCGLWDWDMARGRIYWSRSMYEMLGYEAQDAVLP 300

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
            G ++ +++       +  +      +         R+  ++    + + M       + 
Sbjct: 301 FGDVAAIINEEDGDLYSIAEQA----AAGDISHVD-RVFRMRHADGSWVWMRVRAEIASE 355

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
                +   GI  +  +     ++     M++   +E  S+   + +    ++  N   S
Sbjct: 356 GD---LHLVGIAFDVSEQHRFAQQTAEADMRIREAIENISEAFVLWDANNRLVMANSKFS 412

Query: 483 KLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
           +  G PV  +    P         P      +    +    QT E+       + + L +
Sbjct: 413 EYAGLPVWTLKPGVPRNEVDAHTRPFTFERRMANEHNRAGGQTFERQL----SDGRWLQV 468

Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH---------------------------- 573
               ++            DI++ K  + +L                              
Sbjct: 469 N---ERRTQDGGMVSIGTDITQLKLHQERLVDSERRLMATVHDLSIARKGERDRVRELSE 525

Query: 574 -------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
                   K+ AE  +  KS+FLA +SHE+RTPL AIIGFSE+I+   FGPLG+ RY EY
Sbjct: 526 LARKYSLEKERAEAANRAKSEFLANMSHELRTPLNAIIGFSEMIQAGTFGPLGSDRYEEY 585

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
            N I  SGN +L+++ND+LD+SKIE+G  +L  E + L   ++E + ++ L A EK I +
Sbjct: 586 INDIHTSGNFLLNVINDILDMSKIEAGHFSLDREEIDLCPLINETVRIISLQAEEKNIAV 645

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
            T   + +  + AD R++KQ+ +N+LSNA+ FT  GG+I +    T    + + ++DTGV
Sbjct: 646 ETRIEDAM-ELYADRRAIKQVLINLLSNAVKFTSYGGRITVRARKT-GAALFMTIQDTGV 703

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+    L K  +PF Q+ N       G+GLGL +++++ + + G   I ST   GT++ +
Sbjct: 704 GIPKSALRKIGQPFEQVENQFTKTHTGSGLGLAISRSLAELHGGWLRIRSTERVGTVVSV 763

Query: 807 IFP 809
             P
Sbjct: 764 CIP 766



 Score = 41.2 bits (95), Expect = 0.71,   Method: Composition-based stats.
 Identities = 30/254 (11%), Positives = 61/254 (24%), Gaps = 18/254 (7%)

Query: 86  TWNID-AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN--HIGDLLKRQNT 142
            W+ D A G +   S  + + +G  A   + +   DV+ I++ +  +   I +     + 
Sbjct: 270 LWDWDMARGRI-YWSRSMYEMLGYEAQDAV-LPFGDVAAIINEEDGDLYSIAEQAAAGDI 327

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
            +             +V + + A      +    G     I       +         D 
Sbjct: 328 SHVDRVFRMRHADGSWVWMRVRAEIASEGDLHLVG-----IAFDVSEQHRFAQQTAEADM 382

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
           +     E       +      +    S          V +L       +    T      
Sbjct: 383 RIREAIENISEAFVLWDANNRLVMANSKFSEY-AGLPVWTLKPGVPRNEVDAHTRP---F 438

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG---- 318
           T E     E          +      +  +     +    +S     +      E     
Sbjct: 439 TFERRMANEHNRAGGQTFERQLSDGRWLQVNERRTQDGGMVSIGTDITQLKLHQERLVDS 498

Query: 319 ENLTPETVDKCPIP 332
           E     TV    I 
Sbjct: 499 ERRLMATVHDLSIA 512


>gi|330989302|gb|EGH87405.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. lachrymans str. M301315]
          Length = 778

 Score =  339 bits (870), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 111/426 (26%), Positives = 198/426 (46%), Gaps = 18/426 (4%)

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
           AR+H +Q N +       +  +   +         +          +R +     +L  I
Sbjct: 215 ARVHQVQRNAQRLALGHPLLPQPPEKDEIGQLGTRLVEAGQLLAERERALRDNEERLRLI 274

Query: 458 LEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           +E   D GI  ++R G + + N    ++ GY  ++I+ K F+VF               +
Sbjct: 275 IEGVKDYGIFALDRNGYVTTWNAGAERIKGYTEQEIIGKHFSVFYLPEECPQHPDM--AL 332

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNKLS 572
               +     + +    K+       ++I            +S    DIS+ +  +  L 
Sbjct: 333 REATVNGRYTEESWRRRKDGSRFWASVVITAQYDGNDELRGFSKITRDISDRRVAEIALG 392

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
            A++ AE+ S  KS+FL+R+SHE+RTPL +I+GF++++                  +I R
Sbjct: 393 TAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLL-----DMDSPASQRPQIGHILR 447

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT--SF 690
           +G  +L ++N++LDI++IE+G ++L  EPVSL   + EA+ LV   A +  I ++     
Sbjct: 448 AGQHLLKLINEVLDIARIEAGHVSLSLEPVSLSSVLEEALVLVSPMAADANIELKALPQL 507

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
            + +  ++AD + + Q+ LN+LSNAI +    GQ+ I    +    V + V DTG G+  
Sbjct: 508 PDKLG-VVADRQRLIQVLLNLLSNAIKYNRPEGQVRIEVEQSDE-RVTVSVIDTGYGIAP 565

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             + +  KPF ++        EGTGLGL L+K+M++   G   + +TPA+G    +  PL
Sbjct: 566 ERIGQLFKPFERLDA--NPSVEGTGLGLALSKSMLEMMHGTLSVQNTPAEGCRFILELPL 623

Query: 811 YDTSHP 816
                P
Sbjct: 624 VLVHAP 629



 Score = 55.0 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/259 (9%), Positives = 69/259 (26%), Gaps = 20/259 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH--IDPNNHIGDLLKRQNTW 143
            + +D +GY+   +    +  G    ++IG               P+  + +       +
Sbjct: 283 IFALDRNGYVTTWNAGAERIKGYTEQEIIGKHFSVFYLPEECPQHPDMALREATVNGR-Y 341

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGF---------RGFGIVHVNRVDNDPR 194
             ++     +G+  +  + + A   Y  N E  GF         R    + +     +  
Sbjct: 342 TEESWRRRKDGSRFWASVVITAQ--YDGNDELRGFSKITRDISDRRVAEIALGTAREEAE 399

Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254
              +   +  S +    +   +       +    SP         +    ++      + 
Sbjct: 400 RASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSPASQRPQIGHILRAGQHLLKL--IN 457

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
           +      + +   SL  +    +  L     +         +  + E  +    P     
Sbjct: 458 EVLDIARIEAGHVSLSLEPVSLSSVLE----EALVLVSPMAADANIELKALPQLPDKLGV 513

Query: 315 FDEGENLTPETVDKCPIPF 333
             + + L    ++      
Sbjct: 514 VADRQRLIQVLLNLLSNAI 532


>gi|300864267|ref|ZP_07109147.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC
           6506]
 gi|300337732|emb|CBN54293.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC
           6506]
          Length = 677

 Score =  339 bits (870), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 92/485 (18%), Positives = 194/485 (40%), Gaps = 33/485 (6%)

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN--- 409
             +++  +        LLD    + +      ++   DR+ +     +     N      
Sbjct: 41  GAEALRCLLNEDFAVILLDVQMPAMDGFETATLIRSRDRSRLTPIIFITAFTSNDSQVFK 100

Query: 410 -----SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI-------EVMQLCSI 457
                ++   F P E      +      +  + V+ +    ++            +  ++
Sbjct: 101 GYSLGAVDYLFKPIEAEILTSKVAVFVELFQKTVEVKRQAAELAAVNTELSKSEERFRTL 160

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
              +  GI + + EG     N     + G  +E+ L   +   +       +       +
Sbjct: 161 SACSPLGIYLADVEGRCTYINPRCKGICGLNLEEGLIDVWQRSVHPEDRDRVVADWLAWM 220

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNKL-- 571
                 + E      +    +  + +    +         +  T+ DI++ KQ + +   
Sbjct: 221 ETGQEYSEEFRL---SANGSMRWVHVQSSPMFSDLGKPIGHVGTIIDITDRKQAEEERGR 277

Query: 572 ----SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
                 A+  AE+ +  K +FLA +SHE+RTPL AI+G+S++++ ++F      +     
Sbjct: 278 LIGEQVARHEAERANRMKDEFLAILSHELRTPLNAILGWSKLLRAKKFDQATIDKA---L 334

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
             I+R+      ++ D+LD+S+I  GK+NL+  P+ L   +  AI  ++  A  K I I 
Sbjct: 335 ETIERNAKSQAQLIEDILDVSRILRGKLNLNLHPIPLGYVIEVAIDALRPLAETKSIAIE 394

Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747
               ++I +++ D   ++Q+  N+LSNAI FTP GG++ +       +   +++ DTG+G
Sbjct: 395 FVCISDIGQVIGDSDRLQQVVWNLLSNAIKFTPEGGKVEVRLELV-GDYAEIQIIDTGIG 453

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEI 806
           ++   L      F Q  ++      G GLGL + + +V+ + G     +     G    +
Sbjct: 454 ISAEFLPYVFDRFRQADSTTTRSYGGLGLGLAIVRHLVELHGGTVGAENNSSGIGAKFTV 513

Query: 807 IFPLY 811
             P+ 
Sbjct: 514 SLPIA 518



 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/357 (10%), Positives = 88/357 (24%), Gaps = 15/357 (4%)

Query: 64  NTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD 123
           NT    SE  F        +   +  D  G    I+       G    + +         
Sbjct: 147 NTELSKSEERFRTLSACSPLG-IYLADVEGRCTYINPRCKGICGLNLEEGLIDVWQRSVH 205

Query: 124 ILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI 183
               D               Y +       G+  +V +  +  P++S   +  G    G 
Sbjct: 206 PEDRDRVVADWLAWMETGQEYSEEFRLSANGSMRWVHVQSS--PMFSDLGKPIGH--VGT 261

Query: 184 VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK-NKVSS 242
           +              RL  +    HE ++ +   ++    +  +   P +  +  +K+  
Sbjct: 262 IIDITDRKQAEEERGRLIGEQVARHEAERANRMKDEFLAILSHELRTPLNAILGWSKLLR 321

Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ---NNSKES 299
             ++     D           S+   + +  D   I   +     +   L      + ++
Sbjct: 322 AKKFDQATIDKALETIERNAKSQAQLIEDILDVSRILRGKLNLNLHPIPLGYVIEVAIDA 381

Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY------ANPSFLLLTK 353
              L+     ++               D+     +      + +            L+  
Sbjct: 382 LRPLAETKSIAIEFVCISDIGQVIGDSDRLQQVVWNLLSNAIKFTPEGGKVEVRLELVGD 441

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
           Y  +  I+   G+S                          +  +   H ++ +    
Sbjct: 442 YAEIQIIDTGIGISAEFLPYVFDRFRQADSTTTRSYGGLGLGLAIVRHLVELHGGTV 498


>gi|120611088|ref|YP_970766.1| signal transduction histidine kinase with CheB and CheR activity
            [Acidovorax citrulli AAC00-1]
 gi|120589552|gb|ABM32992.1| signal transduction histidine kinase with CheB and CheR activity
            [Acidovorax citrulli AAC00-1]
          Length = 1535

 Score =  339 bits (870), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 96/644 (14%), Positives = 204/644 (31%), Gaps = 35/644 (5%)

Query: 194  RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253
              LG       + +         ++++        S      + +               
Sbjct: 762  DELGHANSDMQNLMDATAIATVFLDRDLRITRFTPSAVTLFHLISTDVGRPLSNLRTQLQ 821

Query: 254  LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN--SKESFEYLSHRNHPSL 311
                        E     + +    + N Y  +       ++  +     ++        
Sbjct: 822  YPELAEDARRVLERLALVEREVGASDGNWYLVRMLPYRTLDDRIAGVVLTFVDISERKQG 881

Query: 312  SAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
                   E+     V++  +        G++ + N  +  +  Y   + I       T L
Sbjct: 882  QEALRRSEDRFSAIVNQAVVGVVQTDLEGHITFVNRHYSHMLGYGHDELIG------TQL 935

Query: 371  DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
                   +  +   ++ R              ++ +    L +       A+        
Sbjct: 936  LDLIHPADRQLSAHLMRRLAEHGEPFHIEKRCLRKDGST-LWLHNSVSYLADAHGGPTAS 994

Query: 431  NGIEPEDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPV 489
              +  +  + +  +  +     +L  ++E   +  I   + +  I + N    ++ GY  
Sbjct: 995  IVVCNDISERKRAENALRESTERLRLVIENAVEYAIFSTDLDRRITTWNSGAERILGYSE 1054

Query: 490  EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
             + + +   +       +          +L     L+   L   K+         +  + 
Sbjct: 1055 NEAVGQLADMIFTPEDRAAGAPLSETRTALATGGALD-DRLHQRKDGSRFWASGALMPMH 1113

Query: 550  FSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSH--------------KSDFLAR 591
              +     +   + D S+ +  +  L  ++                       K  FLA 
Sbjct: 1114 DGADAVVGFVKILRDQSDQRASQQALEQSRADLLTALRENEEARAALQAADATKDRFLAV 1173

Query: 592  VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
            +SHE+R PL +I G S V+  +   P    +    A  + R    +  +++DL+D+S++ 
Sbjct: 1174 LSHELRNPLASIAGASAVLATEGAAPADRDQA---ARIVQRQARAMAVLLDDLMDLSRLR 1230

Query: 652  SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
             G+M L    V LDE V  A+                        + AD   + Q+  N+
Sbjct: 1231 LGRMVLQQRDVLLDEIVEAALEATLGAIQAAGHEFVQDLPGEAVLLHADPVRIAQVLANL 1290

Query: 712  LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
            LSNA  +TP  G++ +S   T      L V D G+GM    ++     F Q P++     
Sbjct: 1291 LSNAAKYTPDHGRVRLS-AWTEGGWFHLCVEDNGIGMDPDTVDDMFTMFSQSPDAGSRHT 1349

Query: 772  EGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFPLYDTS 814
            +G G+GL L + +V+ + G     S  P +G+   +  PL   S
Sbjct: 1350 QGLGIGLALVRNIVEMHQGTVRGESAGPGQGSRFTVQLPLPVQS 1393



 Score =  137 bits (345), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 64/495 (12%), Positives = 137/495 (27%), Gaps = 56/495 (11%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            +D    +  +S    + +  +  ++    L  +           +   L R     G+  
Sbjct: 577  VDGEQNILHMSPSAGRFLAFHGGELS-RNLMRLIHPAL---RIELRAALYRIG-RTGQPM 631

Query: 149  LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                      VP++ A                 G V V         LG  L     +  
Sbjct: 632  RL------TAVPVETAG----------------GTVRVAPEVRPVPDLGAGLSLVLLYTL 669

Query: 209  EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
                  +   +   D  ++Q       +  ++  L        +  +     L  S E  
Sbjct: 670  PDLPSSALAAEVPQDTAAEQ-------LDRELELLNAQLRSTIEQYEASTEELRASNEEL 722

Query: 269  LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
                E+  +      T ++   ++          L  +      A  D    +    +  
Sbjct: 723  QAMNEELRSATEELETNREELQSINEELTTVNHELKSKVDELGHANSDMQNLMDATAI-- 780

Query: 329  CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388
                 F+     +    PS + L    S D       L T L  P+L+++       L  
Sbjct: 781  --ATVFLDRDLRITRFTPSAVTLFHLISTDVGRPLSNLRTQLQYPELAEDARRVLERLAL 838

Query: 389  SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
             +R   A          +  N   +  +P+   +             +  + +  +  + 
Sbjct: 839  VEREVGA----------SDGNWYLVRMLPYRTLD--DRIAGVVLTFVDISERKQGQEALR 886

Query: 449  IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
                +  +I+     G+   + EG I   NR  S + GY  ++++       +      +
Sbjct: 887  RSEDRFSAIVNQAVVGVVQTDLEGHITFVNRHYSHMLGYGHDELIGTQLLDLIHPADRQL 946

Query: 509  MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEW 564
              H +  +                 K+   L L   +  L  +        +  +DISE 
Sbjct: 947  SAHLMRRLAEHGEP--FHIEKRCLRKDGSTLWLHNSVSYLADAHGGPTASIVVCNDISER 1004

Query: 565  KQEKNKLSHAKKIAE 579
            K+ +N L  + +   
Sbjct: 1005 KRAENALRESTERLR 1019



 Score = 76.2 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/378 (7%), Positives = 102/378 (26%), Gaps = 13/378 (3%)

Query: 88   NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR-QNTWYGK 146
              D  G++  ++      +G    ++IG +L D+        + H+   L      ++ +
Sbjct: 905  QTDLEGHITFVNRHYSHMLGYGHDELIGTQLLDLIHPADRQLSAHLMRRLAEHGEPFHIE 964

Query: 147  TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                  +G+ L++   ++ L     +   +      + +            +   ++   
Sbjct: 965  KRCLRKDGSTLWLHNSVSYLA--DAHGGPT--ASIVVCNDISERKRAENALRESTERLRL 1020

Query: 207  LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK----NKVSSLTEYYAHKDDVLKTEKYPLL 262
            + E    ++    +     +  +      +       V  L +     +D          
Sbjct: 1021 VIENAVEYAIFSTDLDRRITTWNSGAERILGYSENEAVGQLADMIFTPEDRAAGAPLSET 1080

Query: 263  TSEESSLPEQEDFHTI--NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
             +  ++    +D      + +++        + + +     ++      S      +   
Sbjct: 1081 RTALATGGALDDRLHQRKDGSRFWASGALMPMHDGADAVVGFVKILRDQSDQRASQQALE 1140

Query: 321  LTPE-TVDKCPIPFFVYSHGNLFYAN-PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
             +    +          +      A    FL +  ++  + +    G S +L     +  
Sbjct: 1141 QSRADLLTALRENEEARAALQAADATKDRFLAVLSHELRNPLASIAGASAVLATEGAAPA 1200

Query: 379  NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
            +  +   + +     +A                 +        ++  E   +  +     
Sbjct: 1201 DRDQAARIVQRQARAMAVLLDDLMDLSRLRLGRMVLQQRDVLLDEIVEAALEATLGAIQA 1260

Query: 439  DTRINKRKMEIEVMQLCS 456
                  + +  E + L +
Sbjct: 1261 AGHEFVQDLPGEAVLLHA 1278



 Score = 65.8 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 45/403 (11%), Positives = 107/403 (26%), Gaps = 27/403 (6%)

Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA 248
                 A          H   +    +  E+       +++ P        +  L     
Sbjct: 516 AAVALHAQHTAHQGPVVHSGAMVPYFADAERPAVRAMGEKALPWGEVHLRLLEQLAPPSI 575

Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
             D                +    E    +       +     L+   + +   +     
Sbjct: 576 LVDGEQNILHMSPSAGRFLAFHGGELSRNL------MRLIHPALRIELRAALYRIGRTGQ 629

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
           P               TV   P    V   G       + L L    ++ D+  +   + 
Sbjct: 630 PMRLTAVPVE--TAGGTVRVAPEVRPVPDLG-------AGLSLVLLYTLPDLPSSALAAE 680

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
           +         +    ++  +   T     A    ++ + E   AM         +   N 
Sbjct: 681 VPQDTAAEQLDRELELLNAQLRSTIEQYEASTEELRASNEELQAMNEELRSATEELETNR 740

Query: 429 PQNGIEPEDV-----DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
            +     E++     + +    ++      + ++++AT+     ++R+  I     +   
Sbjct: 741 EELQSINEELTTVNHELKSKVDELGHANSDMQNLMDATAIATVFLDRDLRITRFTPSAVT 800

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           LF     D+  +P +    Q     +      +L       +E+       +     +R+
Sbjct: 801 LFHLISTDV-GRPLSNLRTQLQYPELAEDARRVLE--RLALVEREV--GASDGNWYLVRM 855

Query: 544 IIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
           +  +          LT  DISE KQ +  L  ++       + 
Sbjct: 856 LPYRTLDDRIAGVVLTFVDISERKQGQEALRRSEDRFSAIVNQ 898



 Score = 65.4 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/368 (9%), Positives = 96/368 (26%), Gaps = 41/368 (11%)

Query: 86   TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD---LLKRQNT 142
             ++ D    +   +    + +G    + +G     +           + +    L     
Sbjct: 1030 IFSTDLDRRITTWNSGAERILGYSENEAVGQLADMIFTPEDRAAGAPLSETRTALATGGA 1089

Query: 143  WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
                      +G+        A +P++       GF     V + R  +D RA  + L++
Sbjct: 1090 L-DDRLHQRKDGS--RFWASGALMPMHDGADAVVGF-----VKILRDQSDQRASQQALEQ 1141

Query: 203  KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
              + L    + +                      K++  ++  +              +L
Sbjct: 1142 SRADLLTALRENEEARAALQA---------ADATKDRFLAVLSHELRNPLASIAGASAVL 1192

Query: 263  TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
             +E ++  +++             Q    +Q  ++     L      S            
Sbjct: 1193 ATEGAAPADRD-------------QAARIVQRQARAMAVLLDDLMDLSRLRLGRMVLQQR 1239

Query: 323  PETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKS----VDDIEIAGGLSTLLDAPKLSDN 378
               +D+        + G +  A   F+     ++     D + IA  L+ LL        
Sbjct: 1240 DVLLDEIVEAALEATLGAIQAAGHEFVQDLPGEAVLLHADPVRIAQVLANLLSNAAKYTP 1299

Query: 379  NAIKPVMLYRSDRTCIAASARLHTIQWN----RENSLAMTFIPFEKANQFPENMPQNGIE 434
            +  +  +   ++          + I  +     +     +  P   +           + 
Sbjct: 1300 DHGRVRLSAWTEGGWFHLCVEDNGIGMDPDTVDDMFTMFSQSPDAGSRHTQGLGIGLALV 1359

Query: 435  PEDVDTRI 442
               V+   
Sbjct: 1360 RNIVEMHQ 1367


>gi|71736179|ref|YP_274133.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|71556732|gb|AAZ35943.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. phaseolicola 1448A]
          Length = 778

 Score =  339 bits (870), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 111/426 (26%), Positives = 198/426 (46%), Gaps = 18/426 (4%)

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
           AR+H +Q N +       +  +   +         +          +R +     +L  I
Sbjct: 215 ARVHQVQRNAQRLALGHPLLPQPPEKDEIGQLGTRLVEAGQLLAERERALRDNEERLRLI 274

Query: 458 LEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           +E   D GI  ++R G + + N    ++ GY  ++I+ K F+VF               +
Sbjct: 275 IEGVKDYGIFALDRNGYVTTWNAGAERIKGYTEQEIIGKHFSVFYLPEECPQHPDM--AL 332

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNKLS 572
               +     + +    K+       ++I            +S    DIS+ +  +  L 
Sbjct: 333 REATVNGRYTEESWRRRKDGSRFWASVVITAQYDGNDELRGFSKITRDISDRRVAEIALG 392

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
            A++ AE+ S  KS+FL+R+SHE+RTPL +I+GF++++                  +I R
Sbjct: 393 TAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLL-----DMDSPASQRPQIGHILR 447

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT--SF 690
           +G  +L ++N++LDI++IE+G ++L  EPVSL   + EA+ LV   A +  I ++     
Sbjct: 448 AGQHLLKLINEVLDIARIEAGHVSLSLEPVSLSSVLEEALVLVSPMAADANIELKALPQL 507

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
            + +  ++AD + + Q+ LN+LSNAI +    GQ+ I    +    V + V DTG G+  
Sbjct: 508 PDKLG-VVADRQRLIQVLLNLLSNAIKYNRPEGQVRIEVEQSDE-RVTVSVIDTGYGIAP 565

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             + +  KPF ++        EGTGLGL L+K+M++   G   + +TPA+G    +  PL
Sbjct: 566 ERIGQLFKPFERLDA--NPSVEGTGLGLALSKSMLEMMHGTLSVQNTPAEGCRFILELPL 623

Query: 811 YDTSHP 816
                P
Sbjct: 624 VLVHAP 629



 Score = 55.0 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/259 (9%), Positives = 69/259 (26%), Gaps = 20/259 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH--IDPNNHIGDLLKRQNTW 143
            + +D +GY+   +    +  G    ++IG               P+  + +       +
Sbjct: 283 IFALDRNGYVTTWNAGAERIKGYTEQEIIGKHFSVFYLPEECPQHPDMALREATVNGR-Y 341

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGF---------RGFGIVHVNRVDNDPR 194
             ++     +G+  +  + + A   Y  N E  GF         R    + +     +  
Sbjct: 342 TEESWRRRKDGSRFWASVVITAQ--YDGNDELRGFSKITRDISDRRVAEIALGTAREEAE 399

Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254
              +   +  S +    +   +       +    SP         +    ++      + 
Sbjct: 400 RASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSPASQRPQIGHILRAGQHLLKL--IN 457

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
           +      + +   SL  +    +  L     +         +  + E  +    P     
Sbjct: 458 EVLDIARIEAGHVSLSLEPVSLSSVLE----EALVLVSPMAADANIELKALPQLPDKLGV 513

Query: 315 FDEGENLTPETVDKCPIPF 333
             + + L    ++      
Sbjct: 514 VADRQRLIQVLLNLLSNAI 532


>gi|120602614|ref|YP_967014.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4]
 gi|120562843|gb|ABM28587.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4]
          Length = 1039

 Score =  339 bits (870), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 113/677 (16%), Positives = 210/677 (31%), Gaps = 30/677 (4%)

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN-DPRALGKRLD 201
           W          G N  + +  A        R F     F I+   R         G    
Sbjct: 226 WEELGRRLQRVGANDAILLLSAYKDQRGVVRNFEEGLAF-ILRNTRSPVYHLWEHGMGKG 284

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
                L    +           I +  SP     ++   ++   +            + +
Sbjct: 285 LLGGKLISHYEQGRLAADMALKILAGASPASLPVIEGNDANAYLFDYEVLRRHGISTHRI 344

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
                     +  +            +   L        +++               E  
Sbjct: 345 PQGSRVINEPESIWRDYWRELLVAVAFVAVLCVLVVVLLKHVLRLREARTE--IKRSETR 402

Query: 322 TPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
                D+ P+    Y   G +   N  F  L        I          +      +  
Sbjct: 403 YRLVFDQSPLGLVQYDGDGIIIDVNERFAELCGASRDQIIG--------FNYINQMHDAR 454

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
           +   +L               +     + +  +  +         +     GI  +  D 
Sbjct: 455 MLGAVLASLRGGIGGFEGVYTSPL--GKKTAFIRCLFKGVKAPAGDVFIGIGIIEDVSDR 512

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK-PFTV 499
           +  +  +    + L         G    N     L  +  V+++   P +       +  
Sbjct: 513 KQAEEALRERELFLLETQRIAKIGGWKANIRTDYLFWSEEVNRILDLPEDYKPGLAEWLT 572

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT-- 557
                    +   L ++L       +E   +      K   LR  + ++   S   +   
Sbjct: 573 SFMPEYLPRIRAMLEDVLHHGGTADIECEAMTRLGRRKWTHLR-AVGRVDEGSGALVVGT 631

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
             D+ E K+ + +L  AK  A   +  K +FLA +SHEIRTPL  I G   ++ +    P
Sbjct: 632 FQDVDERKRTELELVEAKTKAVAANRAKDEFLANMSHEIRTPLNGIFGMLRMLADASLAP 691

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
               R  E A    RS   + D++ D+LDIS+I++GK+ +   P  L  ++ +   L   
Sbjct: 692 ----RQQELAEMAMRSCRRLADLLTDVLDISRIDAGKLEIVSIPFDLSRSIRQVRELFIP 747

Query: 678 YANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH----- 731
            A +  + +       IP R++ D   ++Q+  N+L NA  FT  G  + +   H     
Sbjct: 748 SAMQAGVSLHVHIDAAIPSRVVGDASRLQQVLTNLLGNAFKFTEKGS-VTLRAEHLSPVL 806

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
            ++  V+  V DTG G+ + +  K   PF Q     +   +G GLGL + + ++    G 
Sbjct: 807 ANSCRVLFSVEDTGCGIPDEKHGKLFTPFTQACEGFKRSHQGAGLGLSICRRIIRVMGGH 866

Query: 792 FYIFSTPAKGTLIEIIF 808
               S    GT +    
Sbjct: 867 LAFESEAGTGTTVYFTL 883



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 46/364 (12%), Positives = 92/364 (25%), Gaps = 15/364 (4%)

Query: 65  TNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI 124
           T    SE  +        +      D  G + +++E   +  G    ++IG     ++ +
Sbjct: 394 TEIKRSETRYRLVFDQSPLGLV-QYDGDGIIIDVNERFAELCGASRDQIIG--FNYINQM 450

Query: 125 LHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIV 184
                   +   L+     +      P+     ++        + +   +   F G GI+
Sbjct: 451 HDARMLGAVLASLRGGIGGFEGVYTSPLGKKTAFIRCLFKG--VKAPAGDV--FIGIGII 506

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244
                        +  +        I K        + D           R+ +      
Sbjct: 507 EDVSDRKQAEEALRERELFLLETQRIAKIGGWKANIRTDYLFWSE--EVNRILDLPEDYK 564

Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
              A        E  P + +    +        I     T+          +    +  S
Sbjct: 565 PGLAEWLTSFMPEYLPRIRAMLEDVLHHGGTADIECEAMTRLGRRKWTHLRAVGRVDEGS 624

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364
                      DE +    E V+            + F AN S  + T       +    
Sbjct: 625 GALVVGTFQDVDERKRTELELVEAKTKAVAANRAKDEFLANMSHEIRTP------LNGIF 678

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
           G+  +L    L+        M  RS R        +  I       L +  IPF+ +   
Sbjct: 679 GMLRMLADASLAPRQQELAEMAMRSCRRLADLLTDVLDISRIDAGKLEIVSIPFDLSRSI 738

Query: 425 PENM 428
            +  
Sbjct: 739 RQVR 742


>gi|260777379|ref|ZP_05886273.1| multi-sensor hybrid histidine kinase [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260607045|gb|EEX33319.1| multi-sensor hybrid histidine kinase [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 1103

 Score =  339 bits (870), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 103/560 (18%), Positives = 215/560 (38%), Gaps = 38/560 (6%)

Query: 278 INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS 337
           +N    ++ +        S +  + L    +  ++    +   +  + VD       + +
Sbjct: 132 LNQADISQMKQVRQELKTSNQKLQQLVSNQNQRINEQEVQMGVMFEQAVDNM---LLLNA 188

Query: 338 HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL-LDAPKLSDNNAIKPVMLYRSDRTCIAA 396
              +   N S L L ++   D + +             + D  +   +            
Sbjct: 189 ELKVLDVNDSALSLFEHSKSDLLGLELTSLLYEFTENNIEDKLSSVEMYQ---------- 238

Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
              L  +      S  ++ +   +               +    ++ + ++     +L  
Sbjct: 239 EVPLDEVIKVSRTSDVLSLLGSVRYITMKTQKYIVLTLRDISKEQMAQNELRRSQSELEE 298

Query: 457 ILEATS-------DGIAIINREGIILSTNRAVSKLFGYPVEDI--LRKPFTVFLEQNTPS 507
           ++ + +        GI   +     LS +  + +++G   ++       +   + +    
Sbjct: 299 VVRSLNLATQAGGIGIWSWDFTTNELSWDDRMYEIYGVDPDNCKNNYTMWQERVLEEDIF 358

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEW 564
                L +      +   E       KE + +     +      +          D+++ 
Sbjct: 359 TAEEALNKARENLTQFNSEFRIQLPDKEIRWIKAAANVLFDQDGTTPIGMGGINIDVTKE 418

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           K  +  L H  +IA   S  KS FLA +SHEIRTP+  ++G   ++         N    
Sbjct: 419 KNAQANLRHESEIALAASEAKSMFLANMSHEIRTPMNGVVGMLSLLSESEL----NGEQK 474

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
                I  S   +L I+ND+LD SKIE+G+M+L   PV L + +   + ++ L AN K I
Sbjct: 475 SMVTTIKDSALTLLHIINDILDFSKIEAGQMSLESVPVELQKLIERTLDVLCLQANNKGI 534

Query: 685 LIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPS----GGQIIISTTHTSNE---E 736
            +  ++  ++P++ ++D   + Q+ LN++ NA+ FT S     G++ +S T   ++    
Sbjct: 535 ELYLTYDASLPKVIMSDSVRLSQVLLNLVGNAVKFTDSTDEMKGKVWVSATLNQHDIAPY 594

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           V + + D G+GMT  ++EK  K F Q   S      GTGLGL + +++++   G  ++ S
Sbjct: 595 VEIIIEDNGIGMTEEQIEKLFKAFSQADTSTTRLYGGTGLGLSITRSLLEMMGGDIHVDS 654

Query: 797 TPAKGTLIEIIFPLYDTSHP 816
               G+   +  P  +   P
Sbjct: 655 RFGVGSRFSVELPFIEVEEP 674



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 42/295 (14%), Positives = 91/295 (30%), Gaps = 30/295 (10%)

Query: 314 YFDEGENLTPETVDKCPIPFFVYSHG----NLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
              + +++    +D       ++        +FYANP+FL      S   I         
Sbjct: 18  APQQDDSIKTSVLDLLSDGMVIFDGQVGSNAIFYANPAFLKYYGLPSNQVIGRNII--EF 75

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
                  D+ A     ++ +            T          +         Q   N  
Sbjct: 76  YSHYLNDDHIAELHSAVHEATSHTTEICVNQET------KKGWLRINLEAMRKQGGGNHY 129

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSI------------------LEATSDGIAIINRE 471
               + +    +  +++++    +L  +                   E   D + ++N E
Sbjct: 130 LILNQADISQMKQVRQELKTSNQKLQQLVSNQNQRINEQEVQMGVMFEQAVDNMLLLNAE 189

Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
             +L  N +   LF +   D+L    T  L + T + +   L+ +         E I + 
Sbjct: 190 LKVLDVNDSALSLFEHSKSDLLGLELTSLLYEFTENNIEDKLSSVEMYQEVPLDEVIKVS 249

Query: 532 STKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
            T +   L   +    +       LT+ DIS+ +  +N+L  ++   E+     +
Sbjct: 250 RTSDVLSLLGSVRYITMKTQKYIVLTLRDISKEQMAQNELRRSQSELEEVVRSLN 304



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 54/137 (39%), Gaps = 6/137 (4%)

Query: 456 SILEATSDGIAIINRE---GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
           S+L+  SDG+ I + +     I   N A  K +G P   ++ +    F            
Sbjct: 28  SVLDLLSDGMVIFDGQVGSNAIFYANPAFLKYYGLPSNQVIGRNIIEFYSHYLNDDHIAE 87

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH--DISEWKQEKNK 570
           L   +      T E      TK+   L + +   +      + L ++  DIS+ KQ + +
Sbjct: 88  LHSAVHEATSHTTEICVNQETKKG-WLRINLEAMRKQGGGNHYLILNQADISQMKQVRQE 146

Query: 571 LSHAKKIAEKESSHKSD 587
           L  + +  ++  S+++ 
Sbjct: 147 LKTSNQKLQQLVSNQNQ 163


>gi|161519742|ref|YP_001583169.1| signal transduction histidine kinase with CheB and CheR activity
            [Burkholderia multivorans ATCC 17616]
 gi|189354079|ref|YP_001949706.1| chemotaxis protein methyltransferase [Burkholderia multivorans ATCC
            17616]
 gi|160343792|gb|ABX16877.1| signal transduction histidine kinase with CheB and CheR activity
            [Burkholderia multivorans ATCC 17616]
 gi|189338101|dbj|BAG47170.1| chemotaxis protein methyltransferase [Burkholderia multivorans ATCC
            17616]
          Length = 1380

 Score =  339 bits (869), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 124/732 (16%), Positives = 264/732 (36%), Gaps = 63/732 (8%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            ID    +  +S+   + + +   ++    +  V   L +D    I   L+   +   +  
Sbjct: 562  IDKESNVVHLSDNAGRFLRHVGGELSSNIMTLVLPDLRLDLRTAIFRALQTGTSVEARRV 621

Query: 149  LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
             W  +       I++   P + +                    +   L    D+    + 
Sbjct: 622  KWTHD--TQVSWINMTVRPFHDK------------------VANADFLLVVFDEVAGRMT 661

Query: 209  EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
            +  +  ++ +            P   ++++++    E  A   +  +T    L  S E  
Sbjct: 662  DEDQAEATGQD-----------PVLAQLEHELQHSREQLATIIEQYETSVEELKASNEEL 710

Query: 269  LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
                E+  + +    + K+   ++      +   +  R   +  A  D    +    +  
Sbjct: 711  QAINEELRSTSEELESSKEELQSVNEELTTANAEMQARIEDTAKANDDLHNIIASSEI-- 768

Query: 329  CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388
                 FV     +    P+   +      D       ++  L  P L+D+       L  
Sbjct: 769  --ATVFVDKEIRIKRFTPNATAIFNLIDSDLGRSLFHITHSLRYPTLADDVRQSFQSLRL 826

Query: 389  SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
             +R           I+        +  +P+  A+             +  D    +    
Sbjct: 827  IERE----------IESEAGRWYLIRLLPYRTAD--DHIDGAVITLIDVTDRHHAEEAAR 874

Query: 449  IEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
                +L  + ++T D  I I +  GII S N    ++FGY  ++++ +   +  E N   
Sbjct: 875  AGEQRLRLVAQSTKDYAIIIQDGNGIIASWNAGAERIFGYTEDEMIGQDVELIYEPNDRH 934

Query: 508  VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR--IIIKKLPFSSCYSLTMHDISEWK 565
                     ++    +  +      TK+ + +     +        + ++  + D+++ K
Sbjct: 935  ARVPAHEREVAAREGRA-DDERWHRTKDGRRIFCSGVVTPIADTSFNGFAKIVRDLTQRK 993

Query: 566  QEKNKLSHA-------KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
              ++    A       ++ A   +  K +F+A +SHE+R PL  I   +E +  +     
Sbjct: 994  LSEDANREALAREQAAREQALSSNQLKDEFIAVLSHELRHPLNLIGVRAE-MLPRLPETR 1052

Query: 619  GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
              P   E A  I ++      I++DLLD+S+I +GK+ L    V L   +   +   +  
Sbjct: 1053 DIPAVREAAELIRQAVRAQAQIIDDLLDLSRIRTGKLALELSRVDLTAVLRTIVDTCEAD 1112

Query: 679  ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738
            A+ + +++     +     LAD    +QI  N++SNA+ FT +GG+I++  TH +   + 
Sbjct: 1113 AHARGLVLTAELPDEPAIALADPIRCEQIFWNLMSNALKFTHAGGRIVVRLTHEAR-MLR 1171

Query: 739  LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST- 797
            + V D G G+    L      F Q P  +     G G+GL L + +V+ + G+    S  
Sbjct: 1172 VDVIDDGQGIDRDTLPHVFDMFRQAPRDRTR--GGLGIGLALVRQLVEMHDGRISAASEG 1229

Query: 798  PAKGTLIEIIFP 809
            P +GT + +  P
Sbjct: 1230 PGRGTTMTVWLP 1241


>gi|163842891|ref|YP_001627295.1| PAS domain-containing protein [Brucella suis ATCC 23445]
 gi|163673614|gb|ABY37725.1| PAS domain S-box [Brucella suis ATCC 23445]
          Length = 783

 Score =  339 bits (869), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 123/543 (22%), Positives = 227/543 (41%), Gaps = 54/543 (9%)

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEI 362
                        + +      + +     + +       Y + S   +  Y++ D +  
Sbjct: 241 QAARAREADDLSGQIQRRIDMALARGRCGLWDWDMARGRIYWSRSMYEMLGYEAQDAVLP 300

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
            G ++ +++       +  +      +         R+  ++    + + M       + 
Sbjct: 301 FGDVAAIINEEDGDLYSIAEQA----AAGDISHVD-RVFRMRHADGSWVWMRVRAEIASE 355

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
                +   GI  +  +     ++     M++   +E  S+   + +    ++  N   S
Sbjct: 356 GD---LHLVGIAFDVSEQHRFAQQTAEADMRIREAIENISEAFVLWDANNRLVMANSKFS 412

Query: 483 KLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
           +  G PV  +    P         P      +    +    QT E+       + + L +
Sbjct: 413 EYAGLPVWTLKPGVPRNEVDAHTRPFTFERRMANEHNRAGGQTFERQL----SDGRWLQV 468

Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH---------------------------- 573
               ++            DI++ K  + +L                              
Sbjct: 469 N---ERRTQDGGMVSIGTDITQLKLHQERLVDSERRLMATVHDLSIARKGERDRVRELSE 525

Query: 574 -------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
                   K+ AE  +  KS+FLA +SHE+RTPL AIIGFSE+I+   FGPLG+ RY EY
Sbjct: 526 LARKYSLEKERAEAANRAKSEFLANMSHELRTPLNAIIGFSEMIQAGTFGPLGSDRYEEY 585

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
            N I  SGN +L+++ND+LD+SKIE+G  +L  E + L   ++E + ++ L A EK I +
Sbjct: 586 INDIHTSGNFLLNVINDILDMSKIEAGHFSLDREEIDLCPLINETVRIISLQAEEKNIAV 645

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
            T   + +  + AD R++KQ+ +N+LSNA+ FT  GG+I +    T    + + ++DTGV
Sbjct: 646 ETRIEDAM-ELYADRRAIKQVLINLLSNAVKFTSYGGRITVRARKT-GAALFMTIQDTGV 703

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+    L K  +PF Q+ N       G+GLGL +++++ + + G   I ST   GT++ +
Sbjct: 704 GIPKSALRKIGQPFEQVENQFTKTHTGSGLGLAISRSLAELHGGWLRIRSTERVGTVVSV 763

Query: 807 IFP 809
             P
Sbjct: 764 CIP 766



 Score = 41.2 bits (95), Expect = 0.72,   Method: Composition-based stats.
 Identities = 30/254 (11%), Positives = 61/254 (24%), Gaps = 18/254 (7%)

Query: 86  TWNID-AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN--HIGDLLKRQNT 142
            W+ D A G +   S  + + +G  A   + +   DV+ I++ +  +   I +     + 
Sbjct: 270 LWDWDMARGRI-YWSRSMYEMLGYEAQDAV-LPFGDVAAIINEEDGDLYSIAEQAAAGDI 327

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
            +             +V + + A      +    G     I       +         D 
Sbjct: 328 SHVDRVFRMRHADGSWVWMRVRAEIASEGDLHLVG-----IAFDVSEQHRFAQQTAEADM 382

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
           +     E       +      +    S          V +L       +    T      
Sbjct: 383 RIREAIENISEAFVLWDANNRLVMANSKFSEY-AGLPVWTLKPGVPRNEVDAHTRP---F 438

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG---- 318
           T E     E          +      +  +     +    +S     +      E     
Sbjct: 439 TFERRMANEHNRAGGQTFERQLSDGRWLQVNERRTQDGGMVSIGTDITQLKLHQERLVDS 498

Query: 319 ENLTPETVDKCPIP 332
           E     TV    I 
Sbjct: 499 ERRLMATVHDLSIA 512


>gi|82702620|ref|YP_412186.1| PAS/PAC sensor hybrid histidine kinase [Nitrosospira multiformis
           ATCC 25196]
 gi|82410685|gb|ABB74794.1| PAS/PAC sensor hybrid histidine kinase [Nitrosospira multiformis
           ATCC 25196]
          Length = 696

 Score =  339 bits (869), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 104/518 (20%), Positives = 185/518 (35%), Gaps = 38/518 (7%)

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
           +   DE  ++   T++       V    G++   N  +L + + K  D +E       L 
Sbjct: 41  TKQLDESLSILRATIESTADGILVTDEYGHMLRYNERYLQMWQIKLPDIVE-------LH 93

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ------- 423
              +L   +         +D              W  E    +         +       
Sbjct: 94  QHRQLQKLSCKY-----LADPKQYLERIEEIYDAWPPETYDLLELTDGRIFERYSKIQYA 148

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
               + +     +    +  +  ++    +L  + EA    I     +G +   N+    
Sbjct: 149 EDLCVGRVWSFRDITARKHAEEALQESTERLHFMAEAMPQKIFTARADGAVDYFNQQWKD 208

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
             G   E +    +   +  +            L+      L+                +
Sbjct: 209 YTGLAREKMQGWEWIKLIHPDDAPECVRRWQHSLNTGEH--LQMECRFRQANGTYRWHLL 266

Query: 544 IIKKLPFSSCY----SLTMHDISEWKQEKNKLSH-------AKKIAEKESSHKSDFLARV 592
             +    +  Y      +  DI   K+   +          A+  AE+ +  K DFLA +
Sbjct: 267 QAQARRDTKGYISMWVGSNTDIDTLKRADEEKKQLLENERIARSEAERANRIKDDFLATL 326

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHE+RTPL AI+G+S++I     G + N         I+R+      ++ DLL++S I S
Sbjct: 327 SHELRTPLNAILGWSQLILQ---GTMKNEDIQRGLETIERNARAQNKLIEDLLEMSSIIS 383

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712
            K+ L  +   L      A+  V   A  K I IR +      R+L D   ++QI  N+L
Sbjct: 384 NKIRLDMQEWDLGAIAEAAVESVAPAAEAKGICIRRTIDATAGRVLGDNHRLQQIIWNLL 443

Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           SNA+ FTP GG + +     ++ ++ + V+D+GVG+    L      F Q  +S      
Sbjct: 444 SNAVKFTPDGGTVEVIVERAAS-QLRVIVKDSGVGIKPEFLAYVFDRFRQADSSLTRNHG 502

Query: 773 GTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFP 809
           G GLGL + K +V  + G     S    +G    +  P
Sbjct: 503 GLGLGLAIVKQLVGLHGGTVCAESKGEGQGASFCVTLP 540



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 32/287 (11%), Positives = 71/287 (24%), Gaps = 9/287 (3%)

Query: 53  NFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFK 112
           +F D      +     +S     F       +  +   A G +   +++     G    K
Sbjct: 158 SFRDITARKHAEEALQESTERLHFMAEAMPQK-IFTARADGAVDYFNQQWKDYTGLAREK 216

Query: 113 MIGMRLCDVSDILH-IDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSR 171
           M G     +       +        L        +       GT  Y    L A      
Sbjct: 217 MQGWEWIKLIHPDDAPECVRRWQHSLNTGEHLQMECRFRQANGT--YRWHLLQAQARRDT 274

Query: 172 NREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231
               S + G     ++ +        + L+ +     E ++ +   +     +  +   P
Sbjct: 275 KGYISMWVGSNT-DIDTLKRADEEKKQLLENERIARSEAERANRIKDDFLATLSHELRTP 333

Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ--EDFHTINLNQYTK--KQ 287
            +  +      L     ++D     E        ++ L E   E    I+        + 
Sbjct: 334 LNAILGWSQLILQGTMKNEDIQRGLETIERNARAQNKLIEDLLEMSSIISNKIRLDMQEW 393

Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF 334
             G +   + ES    +      +    D           +     +
Sbjct: 394 DLGAIAEAAVESVAPAAEAKGICIRRTIDATAGRVLGDNHRLQQIIW 440


>gi|289627276|ref|ZP_06460230.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. aesculi str. NCPPB3681]
 gi|289650434|ref|ZP_06481777.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. aesculi str. 2250]
 gi|330869471|gb|EGH04180.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. aesculi str. 0893_23]
          Length = 778

 Score =  339 bits (869), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 111/426 (26%), Positives = 198/426 (46%), Gaps = 18/426 (4%)

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
           AR+H +Q N +       +  +   +         +          +R +     +L  I
Sbjct: 215 ARVHQVQRNAQRLALGHPLLPQPPEKDEIGQLGTRLVEAGQLLAERERALRDNEERLRLI 274

Query: 458 LEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           +E   D GI  ++R G + + N    ++ GY  ++I+ K F+VF               +
Sbjct: 275 IEGVKDYGIFALDRNGYVTTWNAGAERIKGYTEQEIIGKHFSVFYLPEECPQHPDM--AL 332

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNKLS 572
               +     + +    K+       ++I            +S    DIS+ +  +  L 
Sbjct: 333 REATVNGRYTEESWRRRKDGSRFWASVVITAQYDGNDELRGFSKITRDISDRRVAEIALG 392

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
            A++ AE+ S  KS+FL+R+SHE+RTPL +I+GF++++                  +I R
Sbjct: 393 TAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLL-----DMDSPASQRPQIGHILR 447

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT--SF 690
           +G  +L ++N++LDI++IE+G ++L  EPVSL   + EA+ LV   A +  I ++     
Sbjct: 448 AGQHLLKLINEVLDIARIEAGHVSLSLEPVSLSSVLEEALVLVSPMAADANIELKALPQL 507

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
            + +  ++AD + + Q+ LN+LSNAI +    GQ+ I    +    V + V DTG G+  
Sbjct: 508 PDKLG-VVADRQRLIQVLLNLLSNAIKYNRPEGQVRIEVEQSDE-RVTVSVIDTGYGIAP 565

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             + +  KPF ++        EGTGLGL L+K+M++   G   + +TPA+G    +  PL
Sbjct: 566 ERIGQLFKPFERLDA--NPSVEGTGLGLALSKSMLEMMHGTLSVQNTPAEGCRFILELPL 623

Query: 811 YDTSHP 816
                P
Sbjct: 624 VLVHAP 629



 Score = 55.0 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/259 (9%), Positives = 69/259 (26%), Gaps = 20/259 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH--IDPNNHIGDLLKRQNTW 143
            + +D +GY+   +    +  G    ++IG               P+  + +       +
Sbjct: 283 IFALDRNGYVTTWNAGAERIKGYTEQEIIGKHFSVFYLPEECPQHPDMALREATVNGR-Y 341

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGF---------RGFGIVHVNRVDNDPR 194
             ++     +G+  +  + + A   Y  N E  GF         R    + +     +  
Sbjct: 342 TEESWRRRKDGSRFWASVVITAQ--YDGNDELRGFSKITRDISDRRVAEIALGTAREEAE 399

Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254
              +   +  S +    +   +       +    SP         +    ++      + 
Sbjct: 400 RASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSPASQRPQIGHILRAGQHLLKL--IN 457

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
           +      + +   SL  +    +  L     +         +  + E  +    P     
Sbjct: 458 EVLDIARIEAGHVSLSLEPVSLSSVLE----EALVLVSPMAADANIELKALPQLPDKLGV 513

Query: 315 FDEGENLTPETVDKCPIPF 333
             + + L    ++      
Sbjct: 514 VADRQRLIQVLLNLLSNAI 532


>gi|254718765|ref|ZP_05180576.1| PAS domain S-box-containing protein [Brucella sp. 83/13]
 gi|265983743|ref|ZP_06096478.1| multi-sensor signal transduction histidine kinase [Brucella sp.
           83/13]
 gi|264662335|gb|EEZ32596.1| multi-sensor signal transduction histidine kinase [Brucella sp.
           83/13]
          Length = 783

 Score =  339 bits (869), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 123/543 (22%), Positives = 227/543 (41%), Gaps = 54/543 (9%)

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEI 362
                        + +      + +     + +       Y + S   +  Y++ D +  
Sbjct: 241 QAARAREADDLSGQIQRRIDMALARGRCGLWDWDMARGRIYWSRSMYEMLGYEAQDAVLP 300

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
            G ++ +++       +  +      +         R+  ++    + + M       + 
Sbjct: 301 FGDVAAIINEEDGDLYSIAEQA----AAGDISHVD-RVFRMRHADGSWVWMRVRAEIASE 355

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
                +   GI  +  +     ++     M++   +E  S+   + +    ++  N   S
Sbjct: 356 GD---LHLVGIAFDVSEQHRFAQQTAEADMRIREAIENISEAFVLWDANNRLVMANSKFS 412

Query: 483 KLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
           +  G PV  +    P         P      +    +    QT E+       + + L +
Sbjct: 413 EYAGLPVWTLKPGVPRNEVDAHTRPFTFERRMANEHNRAGGQTFERQL----SDGRWLQV 468

Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH---------------------------- 573
               ++            DI++ K  + +L                              
Sbjct: 469 N---ERRTQDGGMVSIGTDITQLKLHQERLVDSERRLMATVHDLSIARKGERDRVRELSE 525

Query: 574 -------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
                   K+ AE  +  KS+FLA +SHE+RTPL AIIGFSE+I+   FGPLG+ RY EY
Sbjct: 526 LARKYSLEKERAEAANRAKSEFLANMSHELRTPLNAIIGFSEMIQAGTFGPLGSDRYEEY 585

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
            N I  SGN +L+++ND+LD+SKIE+G  +L  E + L   ++E + ++ L A EK I +
Sbjct: 586 INDIHTSGNFLLNVINDILDMSKIEAGHFSLDREEIDLCPLINETVRIISLQAEEKNIAV 645

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
            T   + +  + AD R++KQ+ +N+LSNA+ FT  GG+I +    T    + + ++DTGV
Sbjct: 646 ETRIEDAM-ELYADRRAIKQVLINLLSNAVKFTSYGGRITVRARKT-GAALFMTIQDTGV 703

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+    L K  +PF Q+ N       G+GLGL +++++ + + G   I ST   GT++ +
Sbjct: 704 GIPKSALRKIGQPFEQVENQFTKTHTGSGLGLAISRSLAELHGGWLRIRSTERVGTVVSV 763

Query: 807 IFP 809
             P
Sbjct: 764 CIP 766



 Score = 41.2 bits (95), Expect = 0.72,   Method: Composition-based stats.
 Identities = 30/254 (11%), Positives = 61/254 (24%), Gaps = 18/254 (7%)

Query: 86  TWNID-AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN--HIGDLLKRQNT 142
            W+ D A G +   S  + + +G  A   + +   DV+ I++ +  +   I +     + 
Sbjct: 270 LWDWDMARGRI-YWSRSMYEMLGYEAQDAV-LPFGDVAAIINEEDGDLYSIAEQAAAGDI 327

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
            +             +V + + A      +    G     I       +         D 
Sbjct: 328 SHVDRVFRMRHADGSWVWMRVRAEIASEGDLHLVG-----IAFDVSEQHRFAQQTAEADM 382

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
           +     E       +      +    S          V +L       +    T      
Sbjct: 383 RIREAIENISEAFVLWDANNRLVMANSKFSEY-AGLPVWTLKPGVPRNEVDAHTRP---F 438

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG---- 318
           T E     E          +      +  +     +    +S     +      E     
Sbjct: 439 TFERRMANEHNRAGGQTFERQLSDGRWLQVNERRTQDGGMVSIGTDITQLKLHQERLVDS 498

Query: 319 ENLTPETVDKCPIP 332
           E     TV    I 
Sbjct: 499 ERRLMATVHDLSIA 512


>gi|82699508|ref|YP_414082.1| PAS domain-containing protein [Brucella melitensis biovar Abortus
           2308]
 gi|189023837|ref|YP_001934605.1| sensory box histidine kinase [Brucella abortus S19]
 gi|260545661|ref|ZP_05821402.1| sensory box histidine kinase [Brucella abortus NCTC 8038]
 gi|82615609|emb|CAJ10596.1| PAS domain:PAC motif:ATP-binding region, ATPase-like:Histidine
           kinase A, N-terminal:Bacterial sensor protein,
           C-terminal:Hist [Brucella melitensis biovar Abortus
           2308]
 gi|189019409|gb|ACD72131.1| sensory box histidine kinase [Brucella abortus S19]
 gi|260097068|gb|EEW80943.1| sensory box histidine kinase [Brucella abortus NCTC 8038]
          Length = 783

 Score =  339 bits (869), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 123/543 (22%), Positives = 227/543 (41%), Gaps = 54/543 (9%)

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEI 362
                        + +      + +     + +       Y + S   +  Y++ D +  
Sbjct: 241 QAARAREADDLSGQIQRRIDMALARGRCGLWDWDMARGRIYWSRSMYEMLGYEAQDAVLP 300

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
            G ++ +++       +  +      +         R+  ++    + + M       + 
Sbjct: 301 FGDVAAIINEEDGDLYSIAEQA----AAGDISHVD-RVFRMRHADGSWVWMRVRAEIASE 355

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
                +   GI  +  +     ++     M++   +E  S+   + +    ++  N   S
Sbjct: 356 GD---LHLVGIAFDVSEQHRFAQQTAEADMRIREAIENISEAFVLWDANNRLVMANSKFS 412

Query: 483 KLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
           +  G PV  +    P         P      +    +    QT E+       + + L +
Sbjct: 413 EYAGLPVWTLKPGVPRNEVDAHTRPFTFERRMANEHNRAGGQTFERQL----SDGRWLQV 468

Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH---------------------------- 573
               ++            DI++ K  + +L                              
Sbjct: 469 N---ERRTQDGGMVSIGTDITQLKLHQERLVDSERRLMATVHDLSIARKGERDRVRELSE 525

Query: 574 -------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
                   K+ AE  +  KS+FLA +SHE+RTPL AIIGFSE+I+   FGPLG+ RY EY
Sbjct: 526 LARKYSLEKERAEAANRAKSEFLANMSHELRTPLNAIIGFSEMIQAGTFGPLGSDRYEEY 585

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
            N I  SGN +L+++ND+LD+SKIE+G  +L  E + L   ++E + ++ L A EK I +
Sbjct: 586 INDIHTSGNFLLNVINDILDMSKIEAGHFSLDREEIDLCPLINETVRIISLQAEEKNIAV 645

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
            T   + +  + AD R++KQ+ +N+LSNA+ FT  GG+I +    T    + + ++DTGV
Sbjct: 646 ETRIEDAM-ELYADRRAIKQVLINLLSNAVKFTSYGGRITVRARKT-GAALFMTIQDTGV 703

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+    L K  +PF Q+ N       G+GLGL +++++ + + G   I ST   GT++ +
Sbjct: 704 GIPKSALRKIGQPFEQVENQFTKTHTGSGLGLAISRSLAELHGGWLRIRSTERVGTVVSV 763

Query: 807 IFP 809
             P
Sbjct: 764 CIP 766



 Score = 41.2 bits (95), Expect = 0.72,   Method: Composition-based stats.
 Identities = 30/254 (11%), Positives = 61/254 (24%), Gaps = 18/254 (7%)

Query: 86  TWNID-AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN--HIGDLLKRQNT 142
            W+ D A G +   S  + + +G  A   + +   DV+ I++ +  +   I +     + 
Sbjct: 270 LWDWDMARGRI-YWSRSMYEMLGYEAQDAV-LPFGDVAAIINEEDGDLYSIAEQAAAGDI 327

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
            +             +V + + A      +    G     I       +         D 
Sbjct: 328 SHVDRVFRMRHADGSWVWMRVRAEIASEGDLHLVG-----IAFDVSEQHRFAQQTAEADM 382

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
           +     E       +      +    S          V +L       +    T      
Sbjct: 383 RIREAIENISEAFVLWDANNRLVMANSKFSEY-AGLPVWTLKPGVPRNEVDAHTRP---F 438

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG---- 318
           T E     E          +      +  +     +    +S     +      E     
Sbjct: 439 TFERRMANEHNRAGGQTFERQLSDGRWLQVNERRTQDGGMVSIGTDITQLKLHQERLVDS 498

Query: 319 ENLTPETVDKCPIP 332
           E     TV    I 
Sbjct: 499 ERRLMATVHDLSIA 512


>gi|330921689|ref|XP_003299527.1| hypothetical protein PTT_10535 [Pyrenophora teres f. teres 0-1]
 gi|311326752|gb|EFQ92366.1| hypothetical protein PTT_10535 [Pyrenophora teres f. teres 0-1]
          Length = 1358

 Score =  339 bits (869), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 106/525 (20%), Positives = 200/525 (38%), Gaps = 38/525 (7%)

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
           +A  +E E       +  P+  +  +  G   + +  +   T       +        L 
Sbjct: 449 AAQIEENEKQFEYIANFMPVMVWTTTPDGMHDWFSQRWYDYTGLTPDKSLGEG---WRLP 505

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
             P        +                R             M        +     +  
Sbjct: 506 FHPDDMATTGPR-WFHSLKTGDEYNTEYRCQRY---DGEWRWMLGRALPFYDDSGRIVKW 561

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490
            G   +  D  + +++      QL  +++     + +I+R   +      ++       E
Sbjct: 562 FGTCTDIHDLVMARQEARQTREQLQQVIQYAKIVLWVIDRNDEVKVLEGDIAPHGRMRKE 621

Query: 491 DILRKPFTVFLE--QNTPSVMNHYLTEILSLDLRQTL---EKITLGSTKEEKLLSLRII- 544
           +++ +      E   N        + EIL       +     ++       +L+ L    
Sbjct: 622 ELIGRNIFDVFELTGNDRKRWQGPIQEILQGKQSDEIVNGRYMSEARYYRTRLVPLMSAC 681

Query: 545 ----IKKLPFSSCYSLTMHDISEWKQE----------KNKLSHAKKIAEKESSHKSDFLA 590
               I+   F         DI+E ++            ++L   +  A++ S  KS FLA
Sbjct: 682 RTAGIEGNTFVDGVIGVSMDITELREREEQLKEQEKENSRLLANEAAAKEASRMKSQFLA 741

Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650
            +SHEIRTP+  +IG SE++ +       N    + A  I RS N +L ++ND+LD SK+
Sbjct: 742 NMSHEIRTPIAGVIGMSELLFDMNL----NDEQKDCAENIHRSANSLLTVINDILDFSKV 797

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI---PRILADLRSVKQI 707
           ESG++++     SL   + +   ++   A  K +  ++S  + +    R++ D   ++QI
Sbjct: 798 ESGRLDVEEVQFSLSVVLRDVNKMMSFAAQRKGLDYQSSIQDEVQADLRVMGDPGRLRQI 857

Query: 708 ALNILSNAIHFTPSGGQ---IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764
             N+L+N+I FT  G     ++IS        V   V DTG+G+     ++  +PF Q  
Sbjct: 858 LTNVLTNSIKFTSVGTVKLSVMISQESKDMVTVNFSVVDTGIGIEEEVRKRLFQPFSQAD 917

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +S   R  GTGLGL ++K +V+   G+ ++ S   +GT      P
Sbjct: 918 SSTARRFGGTGLGLTISKNLVELMKGQIWLDSKLGQGTTATFWIP 962



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/285 (9%), Positives = 71/285 (24%), Gaps = 18/285 (6%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKS-------VDDI 360
            S ++ F +   L    ++   +P +  +   N    N + L L    +        D +
Sbjct: 308 ASSASVFQKATQLKDAILNSITMPAYAMWKDENFGIPNKALLRLLSSDASYIPGDQRDFL 367

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
                 +         D   I  V   R          R           +         
Sbjct: 368 SQFSCWTEDFQRLLTIDEFPIIEVCRTRDRVEKRRIGMRH---PQTGTRLVYEINGEPVF 424

Query: 421 ANQFPENMPQNGIEPEDVD-TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
            ++  + +    I  +  + T+    ++E    Q   I       +     +G+    ++
Sbjct: 425 HDETGDFLGGIVIFKDITEYTKQIAAQIEENEKQFEYIANFMPVMVWTTTPDGMHDWFSQ 484

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
                 G   +  L + + +    +  +         L                 + +  
Sbjct: 485 RWYDYTGLTPDKSLGEGWRLPFHPDDMATTGPRWFHSLKTGDE--YNTEYRCQRYDGEWR 542

Query: 540 SLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEK 580
            +          S     +  T  DI +    + +    ++  ++
Sbjct: 543 WMLGRALPFYDDSGRIVKWFGTCTDIHDLVMARQEARQTREQLQQ 587



 Score = 65.4 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 23/177 (12%), Positives = 48/177 (27%), Gaps = 8/177 (4%)

Query: 69  DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID 128
           ++E  F +      V   W     G     S+      G    K +G           + 
Sbjct: 454 ENEKQFEYIANFMPV-MVWTTTPDGMHDWFSQRWYDYTGLTPDKSLGEGWRLPFHPDDMA 512

Query: 129 PNNHIG-DLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187
                    LK  + +  +      +G   +  +   ALP Y  +      + FG     
Sbjct: 513 TTGPRWFHSLKTGDEYNTEYRCQRYDGE--WRWMLGRALPFYDDSGRIV--KWFGTCTDI 568

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEK--EKYDIFSQQSPPPHLRMKNKVSS 242
                 R   ++  ++   + +  K    V    ++  +      P     K ++  
Sbjct: 569 HDLVMARQEARQTREQLQQVIQYAKIVLWVIDRNDEVKVLEGDIAPHGRMRKEELIG 625



 Score = 38.5 bits (88), Expect = 4.4,   Method: Composition-based stats.
 Identities = 12/104 (11%), Positives = 32/104 (30%), Gaps = 15/104 (14%)

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV------- 508
           + L+     + +++    ++  N A+++LFG   E I     +  L+  T          
Sbjct: 46  TALQYLPVPVLVLSSHKTVVLANEAMARLFGIGFESINDLSISDVLQDKTMGELGVDILQ 105

Query: 509 --------MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
                      +L  ++   +  +L++                 
Sbjct: 106 NGSPILITWEDFLECVIKDSITSSLDEDGDSRMGSGHTTPTAAT 149


>gi|302878534|ref|YP_003847098.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
           ES-2]
 gi|302581323|gb|ADL55334.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
           ES-2]
          Length = 963

 Score =  339 bits (869), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 125/695 (17%), Positives = 249/695 (35%), Gaps = 56/695 (8%)

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
           W     L    G       ++A L I    +                    R      + 
Sbjct: 68  WNVDDELISKIGRAFVANAEIAELTIRDDQQRVIYQH-----RHRDGRLILREFSVEHEG 122

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
           K+    EI     + E++ + +         L + + + ++    A             +
Sbjct: 123 KYIGSVEISLSLRAFEEKNHWLLLTSLGTAALLIISLLGAMRWMLA-------RLLKKPV 175

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
            +   ++ +  +     +        F  + +  K   + ++ R      A     E   
Sbjct: 176 DNLVGAIAQVVEGRYPLIALAQTYTEFAPIISGFKTMSDAVASR-----EASLRASEQKM 230

Query: 323 PETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
              ++      ++    G+  +AN     L + +  D I   G         +       
Sbjct: 231 LSILEGVDAYIYLKDTEGHYLFANRPLRELWQVEMNDLI---GFGDEKFFNAESVVTLRQ 287

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
               + R   T  +              ++           +        GI  +  + +
Sbjct: 288 TDSRVLRGGETLHSEEVNTIAAT---GKTVYYQSTKLPLYREDGSIYALCGISVDITERK 344

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF- 500
             +  + +   +L     A   GI   +    +L+ + ++  L+G    D          
Sbjct: 345 RIEEALRVNEERLKLATRAGGIGIWDWDVAANVLTWDDSMYLLYGLCAGDFGGAYDAWLS 404

Query: 501 -LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLT 557
            L  +  ++ +  +   L  +   + E   +    E + +     + +    S      T
Sbjct: 405 TLHPDDRALSDAEIQAALRGEREFSPEFRVIRPDGEIRKIKAFAKVYRDESGSPTRMVGT 464

Query: 558 MHDISEWKQEKNKLSHAKKIAEK------------------ESSHKSDFLARVSHEIRTP 599
             DI++ K+ + +L   K   E+                   +  KS FLA +SHE+RTP
Sbjct: 465 NFDITDLKRIEEELRKYKDHLEEEVQSRTSELVLARNAAETANLAKSVFLANMSHELRTP 524

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L A++GFS +++     PL +       N I+RSG  +L ++ND+L+++KIE+G + L  
Sbjct: 525 LNAVLGFSSLLRKD---PLLSKEQRTNLNIINRSGEYLLALINDVLEMAKIEAGWVQLDS 581

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P+ L   V +   ++Q+ A EK + +    ++  PR I  D   ++QI +N++ NA+ F
Sbjct: 582 APLDLGMLVRDVTDMMQVRAQEKGLQLLIDQSSEFPRYIRGDEARLRQILINLVGNAVKF 641

Query: 719 TPSGGQIIISTTHTSN---EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T  GG + +      N     +++ V DTG G+   + EK  +PF Q+   +    +GTG
Sbjct: 642 TQQGG-VTVRFGLKPNTTPAHLLIEVEDTGSGIAAEDQEKIFEPFVQV--GEVAMQKGTG 698

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           LGL + +  V    G   + S P  G+L  +  P+
Sbjct: 699 LGLTITRQFVQLMGGSVTLNSKPGSGSLFRVELPI 733



 Score = 54.6 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 38/395 (9%), Positives = 95/395 (24%), Gaps = 24/395 (6%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTW 143
           + +  D  G+    +  L +        +IG       +   +         +L+   T 
Sbjct: 240 YIYLKDTEGHYLFANRPLRELWQVEMNDLIGFGDEKFFNAESVVTLRQTDSRVLRGGETL 299

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
           + +     I  T   V      LP+Y  +     +   GI              +  +++
Sbjct: 300 HSEEVN-TIAATGKTVYYQSTKLPLYREDGSI--YALCGISVDITERKRIEEALRVNEER 356

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSP-----PPHLRMKNKVSSLTEYYAHKDDVLKT-E 257
                              ++ +                           H DD   +  
Sbjct: 357 LKLATRAGGIGIWDWDVAANVLTWDDSMYLLYGLCAGDFGGAYDAWLSTLHPDDRALSDA 416

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
           +       E     +      +      K +    ++ S      +      +     +E
Sbjct: 417 EIQAALRGEREFSPEFRVIRPDGEIRKIKAFAKVYRDESGSPTRMVGTNFDITDLKRIEE 476

Query: 318 GENLTPETVD---KCPIPFFVYSHGNLFYANPS---FLLLTKYKSVDDIEIAGGLSTLLD 371
                 + ++   +      V +      AN +   FL    ++    +    G S+LL 
Sbjct: 477 ELRKYKDHLEEEVQSRTSELVLARNAAETANLAKSVFLANMSHELRTPLNAVLGFSSLLR 536

Query: 372 APKLSDNNAIKPVMLYRSDRT--------CIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
              L        + +               +  +             L +  +  +  + 
Sbjct: 537 KDPLLSKEQRTNLNIINRSGEYLLALINDVLEMAKIEAGWVQLDSAPLDLGMLVRDVTDM 596

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458
                 + G++     +    R +  +  +L  IL
Sbjct: 597 MQVRAQEKGLQLLIDQSSEFPRYIRGDEARLRQIL 631


>gi|163793548|ref|ZP_02187523.1| PAS/PAC Sensor Signal Transduction Histidine Kinase [alpha
           proteobacterium BAL199]
 gi|159181350|gb|EDP65865.1| PAS/PAC Sensor Signal Transduction Histidine Kinase [alpha
           proteobacterium BAL199]
          Length = 514

 Score =  339 bits (869), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 118/489 (24%), Positives = 213/489 (43%), Gaps = 13/489 (2%)

Query: 326 VDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
           +         V     + + N S   +  Y + + +     L  L+       + +    
Sbjct: 10  LHSLDEGVVGVNDASTIVFVNASAERMFGYSAAEMLGQ--SLDVLIPENHRDRHESDVEK 67

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
               +  + +       T +    N         + +    + +    +  +  +     
Sbjct: 68  FRQSAQSSRMMQERGGVTGRRKDGNQFDAEVSISKISFDGGQIL--LALVRDVTERARAD 125

Query: 445 RKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            ++     +   ILE  +D + + +   G IL  N     LFG     ++          
Sbjct: 126 ARLRALEARHRVILETCADAVLLADAVTGAILDANDQAGALFGCDGSALIGIHKDELCAW 185

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII--IKKLPFSSCYSLTMHDI 561
           +  +     +    +     T         ++ +L+ + I   + ++  +        DI
Sbjct: 186 DQDNRDGWCVERTQAAGRVHTPNATI--RRRDGQLVPVEITSGMTQIDGAPTLVGFFRDI 243

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           +  K  + +L  A+  A++ S  K+ FLA VSHE+RTPL AIIG SE+I+++ +G +GNP
Sbjct: 244 TPHKAREEELVEAQLAAKEGSESKTRFLANVSHELRTPLNAIIGMSEIIRDEMWGGIGNP 303

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
           +Y EYA  I+ SG  +LD++N +LD S+IE  K+ LH + V +   + ++   VQ   +E
Sbjct: 304 KYREYATDINDSGLHLLDVINAILDYSRIEMDKVTLHDDQVDVVGVLDQSRRTVQRLLDE 363

Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
             +      A     ++AD RSV+Q+ LN+LSNAI  TP GG+I ++    +  E++L V
Sbjct: 364 GGLTCELQ-AKGPLVLVADRRSVRQMLLNLLSNAIKHTPPGGRITLTAEAGNEGELVLTV 422

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQ-IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           RD+G G+    L    +PF  +       R  GTGLGL + K ++  + G   I S   +
Sbjct: 423 RDSGEGIPRERLALVTEPFN-LDEDISVSRQGGTGLGLAITKGLIKRHGGAMSINSRVGE 481

Query: 801 GTLIEIIFP 809
           GT + ++FP
Sbjct: 482 GTTVRLVFP 490



 Score = 38.1 bits (87), Expect = 6.2,   Method: Composition-based stats.
 Identities = 19/248 (7%), Positives = 54/248 (21%), Gaps = 24/248 (9%)

Query: 94  YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK------RQNTWYGKT 147
            +  ++    +  G  A +M+G  L  +    H D +    +  +      R     G  
Sbjct: 25  TIVFVNASAERMFGYSAAEMLGQSLDVLIPENHRDRHESDVEKFRQSAQSSRMMQERGGV 84

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFR-GFGIVHVNRV----------DNDPRAL 196
           T    +G      + ++ +        F G +    +V                     +
Sbjct: 85  TGRRKDGNQFDAEVSISKI-------SFDGGQILLALVRDVTERARADARLRALEARHRV 137

Query: 197 GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256
                     L +   G      ++            + +        +        ++ 
Sbjct: 138 ILETCADAVLLADAVTGAILDANDQAGALFGCDGSALIGIHKDELCAWDQDNRDGWCVER 197

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
            +        ++   + D   + +   +                +   H+          
Sbjct: 198 TQAAGRVHTPNATIRRRDGQLVPVEITSGMTQIDGAPTLVGFFRDITPHKAREEELVEAQ 257

Query: 317 EGENLTPE 324
                  E
Sbjct: 258 LAAKEGSE 265


>gi|83591310|ref|YP_431319.1| multi-sensor signal transduction histidine kinase [Moorella
           thermoacetica ATCC 39073]
 gi|83574224|gb|ABC20776.1| multi-sensor signal transduction histidine kinase [Moorella
           thermoacetica ATCC 39073]
          Length = 489

 Score =  339 bits (869), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 85/369 (23%), Positives = 162/369 (43%), Gaps = 24/369 (6%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           R++  E  ++ +IL + +DG+  +++ G ++  N A  K+FG    ++  K     +  +
Sbjct: 128 REIADERNKMKAILASITDGLVAVDQVGRVIMLNPAAEKMFGKKGAEVEHKYLLKVVRNH 187

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDIS 562
               ++  + EIL+  L   LE          +L  +                LT+ DI+
Sbjct: 188 ---EIDAMVKEILASGLP--LENEVRLFPTTSQLFRIYGTPITSEQGRIIGAVLTIRDIT 242

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           + ++ +                +++F+A VSHE+RTPLT+I GF E +            
Sbjct: 243 DIRRLE--------------QMRTEFVANVSHELRTPLTSIRGFVETLLEGAL--EDPEV 286

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
              +   I+     +  ++ DLL +S++ES           L   +   ++ V   A EK
Sbjct: 287 SRRFLGIINHEAQRLQQLIEDLLSLSRLESQPKRQDAGRADLAATLDRVLTTVNQLAREK 346

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
            + +       IP +      + Q+ LN++ N I +TP+GG++ I       E V + V 
Sbjct: 347 GVALEKEIPAEIPELAISESYLNQVLLNLIDNGIKYTPAGGRVTIRAA-RLGELVQVEVA 405

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG+G+    L +  + F ++  ++     GTGLGL + K +V+++ G   + S P +G+
Sbjct: 406 DTGIGIPPESLPRVFERFYRVDKARSREMGGTGLGLAIVKHIVESHGGSISVTSRPGQGS 465

Query: 803 LIEIIFPLY 811
                 P+ 
Sbjct: 466 HFFFTLPIA 474



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/300 (12%), Positives = 79/300 (26%), Gaps = 20/300 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D  G +  ++    K  G    ++    L  V     ID    + ++L        +  
Sbjct: 151 VDQVGRVIMLNPAAEKMFGKKGAEVEHKYLLKVVRNHEIDA--MVKEILASGLPLENEVR 208

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           L+P       +       PI S      G      +             +RL++  +   
Sbjct: 209 LFPTTSQLFRIY----GTPITSEQGRIIGA--VLTIRDITDI-------RRLEQMRTEFV 255

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT-SEES 267
                           F +      L              H+   L+     LL+ S   
Sbjct: 256 ANVSHELRTPLTSIRGFVETLLEGALEDPEVSRRFLGIINHEAQRLQQLIEDLLSLSRLE 315

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
           S P+++D    +L   T  +   T+   ++E    L       +         L    ++
Sbjct: 316 SQPKRQDAGRADLA-ATLDRVLTTVNQLAREKGVALEKEIPAEIPELAISESYLNQVLLN 374

Query: 328 KCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAG--GLSTLLDAPKLSDNNAIKPV 384
                  +  + G +         L + +  D         L  + +     D    + +
Sbjct: 375 LIDNGIKYTPAGGRVTIRAARLGELVQVEVADTGIGIPPESLPRVFERFYRVDKARSREM 434


>gi|254415722|ref|ZP_05029480.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196177428|gb|EDX72434.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 974

 Score =  339 bits (869), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 93/408 (22%), Positives = 168/408 (41%), Gaps = 24/408 (5%)

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
            Q  +      +  E ++ +  + ++     QL   LEA   G+ +++ EG     N+  
Sbjct: 139 AQQAQADLLENLRQEVIERQRIQEELRASERQLAQFLEAVPVGLFVVDAEGQSYYANQRA 198

Query: 482 SKLFG---YPVEDILRKPFTVFLE----QNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
            +L G    P   +        +             + + + L  +              
Sbjct: 199 QQLVGKGMIPGATVEELSQVYQIYVAGTHQLYPTEKNPIVQALRGERVTVDNMEI---HH 255

Query: 535 EEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSH------ 584
            E+++ L +    +               DIS  KQ + +     +  E++++       
Sbjct: 256 GEQVIPLEVWATPIYNEQGEIVYAIAAFQDISLHKQAEAERLQFTQALEQQNAALQRLDQ 315

Query: 585 -KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
            K +FLA  SHE+RTPL  IIG +E + +   G L  P  I     +  SG  +  ++ND
Sbjct: 316 LKDEFLANTSHELRTPLNGIIGITESLIDGAAGSLS-PVQIANLAMVVSSGKRLNSLIND 374

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703
           +LD +K+++  + LH + V   +     ++L +     K + +      + P I  D   
Sbjct: 375 ILDFAKLKNHDIELHRKSVDFRQITEVVLTLSRPLIQGKSLELNNEIPADFPGIDGDENR 434

Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
           ++QI  N++ NAI FT SG  I +S T   N    + V DTG+G++  + E   K F Q+
Sbjct: 435 LQQIMYNLVGNAIKFTESGS-ITVSATQQQN-MAEVTVADTGIGISPDKFEDIFKSFEQL 492

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
             S      GTGLGL + K +++ + G+  + S   +G+      PL 
Sbjct: 493 NASVSYPSRGTGLGLSITKQLIELHGGRIRVESEVGQGSRFIFTLPLS 540



 Score = 41.6 bits (96), Expect = 0.64,   Method: Composition-based stats.
 Identities = 26/194 (13%), Positives = 58/194 (29%), Gaps = 17/194 (8%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS----------DILHIDPNNHIGD 135
            + +DA G     ++   + +G     + G  + ++S            L+    N I  
Sbjct: 182 LFVVDAEGQSYYANQRAQQLVGKGM--IPGATVEELSQVYQIYVAGTHQLYPTEKNPIVQ 239

Query: 136 LLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA 195
            L+ +           I      +P+++ A PIY+   E              +     A
Sbjct: 240 ALRGERVTVD---NMEIHHGEQVIPLEVWATPIYNEQGEIVYA--IAAFQDISLHKQAEA 294

Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255
              +  +     +   +    ++ E     S +   P   +     SL +  A     ++
Sbjct: 295 ERLQFTQALEQQNAALQRLDQLKDEFLANTSHELRTPLNGIIGITESLIDGAAGSLSPVQ 354

Query: 256 TEKYPLLTSEESSL 269
                ++ S    L
Sbjct: 355 IANLAMVVSSGKRL 368


>gi|87308528|ref|ZP_01090668.1| FOG: CheY-like receiver [Blastopirellula marina DSM 3645]
 gi|87288620|gb|EAQ80514.1| FOG: CheY-like receiver [Blastopirellula marina DSM 3645]
          Length = 954

 Score =  339 bits (869), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 98/424 (23%), Positives = 185/424 (43%), Gaps = 16/424 (3%)

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
            +  + +  LA+      +  + P+   +       +       + +    +L  I++++
Sbjct: 126 PVFLDDKPVLALELFGDSERLEDPQIDVKMADAMRGLSVLAACWRRDESYQRLAQIVDSS 185

Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
            D I   + +  I   N     ++GY  E+ L KP ++                 L    
Sbjct: 186 YDAIISRDVDDKITCWNAGADAVYGYQAEEALGKPISILFPPTRREEEPEITDARLHGKR 245

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKI 577
               E       ++ +++S+ I +  L  ++      S    DISE K  + +L  AK  
Sbjct: 246 LTQFETER--RRRDGRIISVSITVSPLRDANERIIGVSTIERDISERKFAERELQKAKAA 303

Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
           AE+ +  +S+FLA VSHEIRTP+ AIIG +++   +           EY    + S + +
Sbjct: 304 AERANRARSEFLANVSHEIRTPMNAIIGMTKLTLAEDL----PEAVREYVETANSSAHTL 359

Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR- 696
           L ++ND+LD SKIE+GK  +     +L + +   +  +   A  K + +   +   IP  
Sbjct: 360 LSLLNDILDFSKIEAGKFTIDRSEFNLRQTIDATMRALSERAFSKGLEVAIDYDPRIPEE 419

Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQ---IIISTTHTSNEEVILRVRDTGVGMTNYEL 753
           ++ D   ++QI  N++SNA+ FT  G     + +         +   + DTGVG+T  + 
Sbjct: 420 LIGDAIRLRQIITNLVSNAVKFTERGEVLLSVKLLRRFPREVRIRFTISDTGVGITPADQ 479

Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI--IFPLY 811
           ++  +PF Q+ +S      G+GLGL +   +++   G+  + S P  G+      +FP  
Sbjct: 480 KRIFEPFTQVDSSSTRNFGGSGLGLTICHELLELMGGRLELNSEPGVGSRFSFALLFPRT 539

Query: 812 DTSH 815
            T+ 
Sbjct: 540 RTAE 543



 Score = 55.0 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/252 (8%), Positives = 65/252 (25%), Gaps = 10/252 (3%)

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
              +  +      +     +     +  + S          V           + L +  
Sbjct: 55  ANPQTLAAQLWHPEELIDCDDVAQRLRRRYSEAAPAEAGAAVRRAFLEQRPMIEPLDSTM 114

Query: 259 YPLLTSEESSLP-EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
               +    ++P   +D   + L  +   +     Q + K +          +     DE
Sbjct: 115 SADQSLSILAIPVFLDDKPVLALELFGDSERLEDPQIDVKMADAMRGLSVLAACWRR-DE 173

Query: 318 GENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
                 + VD              +   N     +  Y++ + +     +  L    +  
Sbjct: 174 SYQRLAQIVDSSYDAIISRDVDDKITCWNAGADAVYGYQAEEALGKPISI--LFPPTRRE 231

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           +   I    L+    T           +      ++++       +     +  + IE +
Sbjct: 232 EEPEITDARLHGKRLTQFETE-----RRRRDGRIISVSITVSPLRDANERIIGVSTIERD 286

Query: 437 DVDTRINKRKME 448
             + +  +R+++
Sbjct: 287 ISERKFAERELQ 298



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/246 (9%), Positives = 56/246 (22%), Gaps = 10/246 (4%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL-LKRQNTWYGKTT 148
           D    +   +       G  A + +G  +  +      +    I D  L  +     +T 
Sbjct: 193 DVDDKITCWNAGADAVYGYQAEEALGKPISILFPPTRREEEPEITDARLHGKRLTQFETE 252

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +G  + V I ++  P+   N    G     I              ++        +
Sbjct: 253 RRRRDGRIISVSITVS--PLRDANERIIGVS--TIERDISERKFAERELQKAKAAAERAN 308

Query: 209 EIKKGHSSVEKEKYD-----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
             +    +    +       I           +   V    E        L +    +L 
Sbjct: 309 RARSEFLANVSHEIRTPMNAIIGMTKLTLAEDLPEAVREYVETANSSAHTLLSLLNDILD 368

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
             +    +     +    + T       L   +      ++    P +            
Sbjct: 369 FSKIEAGKFTIDRSEFNLRQTIDATMRALSERAFSKGLEVAIDYDPRIPEELIGDAIRLR 428

Query: 324 ETVDKC 329
           + +   
Sbjct: 429 QIITNL 434


>gi|298505397|gb|ADI84120.1| sensor histidine kinase response regulator, PAS and PAS
           domain-containing [Geobacter sulfurreducens KN400]
          Length = 772

 Score =  339 bits (869), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 100/496 (20%), Positives = 184/496 (37%), Gaps = 31/496 (6%)

Query: 322 TPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
                +      F+    G+    NP+      Y   + + +  G+           ++ 
Sbjct: 41  YRALFEHAIDGIFIMDAEGHYLDVNPAICSAIGYTRDEFLALDWGV------LSRGVDSG 94

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
                L R          R    +   + ++ ++                 GI  +  + 
Sbjct: 95  WAAASLARIVGGEPLREERTVWTRNGDQLTVELSAHLLPDGK-------ILGIARDVSER 147

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +  +  +      L +IL+     I I + +G +   N A  +  G P    + +     
Sbjct: 148 KRMEESLRSTSEFLDTILDEAPLPIYITSVDGTLRLANNAWERETGIPRNAAVGRRLNEL 207

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL----LSLRIIIKKLPFSSCYSL 556
                    +     ++  +     ++                 LR     +      S+
Sbjct: 208 FPAAMCDQFSEINRRVVESNATAVQDEFLDFGAGVRVFHTIKFPLRDAAGGVVDVGGISI 267

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
              DI++  + + +L  A   A   S  K DFLA +SHEIRTP+  +IG  E+++     
Sbjct: 268 ---DITDRSKMEGELRAAHAAAVDSSRAKIDFLANMSHEIRTPMNGVIGTLELLRETDL- 323

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
              +PR  EYA     S   +L ++N +LD SKIES ++ L   P ++ EAV  A+   +
Sbjct: 324 ---DPRQREYAEIARESAESMLAVINMVLDYSKIESHQLVLEAVPFAIREAVERAVKPFR 380

Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
             A  K +++      ++P  ++ D     QI  N++ NA+ FT  G  I +     + +
Sbjct: 381 AVAARKGVMVAADVPPHVPETVVGDPVRFSQIVANLVGNAVKFTEQGA-ITVQLGAAAVD 439

Query: 736 EVILRVR----DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
           +  + V     DTG G++  + +    PF Q   S      GTGLGL + + +V+A  G 
Sbjct: 440 DCRIDVSCSVGDTGAGISPEKFDTIFDPFVQADGSTTRIHGGTGLGLAIVRRLVEAMDGV 499

Query: 792 FYIFSTPAKGTLIEII 807
             + S P  G+     
Sbjct: 500 ISVASEPGMGSTFSFR 515



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/396 (9%), Positives = 95/396 (23%), Gaps = 25/396 (6%)

Query: 45  CHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPK 104
           C  S   + +T   +     T  L   + +        +   + +DA G+  +++  +  
Sbjct: 12  CAASVLGAPYTLLCRLLPRITADLRYGSGYR-ALFEHAIDGIFIMDAEGHYLDVNPAICS 70

Query: 105 TIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLA 164
            IG    + + +    +S  +           +        + T+W   G  L V +   
Sbjct: 71  AIGYTRDEFLALDWGVLSRGVDSGWAAASLARIVGGEPLREERTVWTRNGDQLTVELSAH 130

Query: 165 ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDI 224
            LP    + +  G     I              +   +    + +       +      +
Sbjct: 131 LLP----DGKILG-----IARDVSERKRMEESLRSTSEFLDTILDEAPLPIYITSVDGTL 181

Query: 225 -FSQQSPPPHLRMKNK--VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLN 281
             +  +      +     V              +  +      E ++   Q++F      
Sbjct: 182 RLANNAWERETGIPRNAAVGRRLNELFPAAMCDQFSEINRRVVESNATAVQDEFLDFGAG 241

Query: 282 QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNL 341
                     L++ +    +        +  +  +                         
Sbjct: 242 VRVFHTIKFPLRDAAGGVVDVGGISIDITDRSKMEGELRAAHA------AAVDSSRAKID 295

Query: 342 FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401
           F AN S  + T       +    G   LL    L         +   S  + +A    + 
Sbjct: 296 FLANMSHEIRTP------MNGVIGTLELLRETDLDPRQREYAEIARESAESMLAVINMVL 349

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
                  + L +  +PF         +         
Sbjct: 350 DYSKIESHQLVLEAVPFAIREAVERAVKPFRAVAAR 385


>gi|294667293|ref|ZP_06732513.1| sensor histidine kinase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292602965|gb|EFF46396.1| sensor histidine kinase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 631

 Score =  339 bits (869), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 90/481 (18%), Positives = 184/481 (38%), Gaps = 32/481 (6%)

Query: 341 LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400
           +   N +F   T             +  LL      +                I    + 
Sbjct: 13  IRTTNGAFERYTGLSPNAL---NVSIRNLLPE---HEQEWFDRYGHVARTGNRIHFEMQA 66

Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
             ++          +         PE      +  +  + +  +R++     +  ++ + 
Sbjct: 67  KALKR--------WYSVDAFRVGQPEQARVAILFMDITERKRVERELAESEARFSALADG 118

Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520
               + +++ +G++   N A  + FG  +       ++  L  +             SL 
Sbjct: 119 LPMPVWVLDAQGVVRFVNSAYGEFFGLDISSGTVSAWSELLHPDDLPTFQ--FELAASLQ 176

Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH----DISEWKQEK-------N 569
            ++ L  +      + +   + +       +    + +     D++E ++ +        
Sbjct: 177 EQRGLRALVRARRHDGQWRWIEMTATPRYSADGRFIGLAGSSPDVTEQREIELAREQLLE 236

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
               A+  AE  +  K +FLA +SHE+RTPLT I+G+SE++  +         Y +  + 
Sbjct: 237 SERSARNEAESMARLKDEFLATLSHELRTPLTTILGWSELLLQRVEEGQP---YYKGLSV 293

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I  S      +++D+LD+S +  GK+ L  E + L E V EA++  +L A  K  ++   
Sbjct: 294 IASSARAQKRLISDMLDLSSMLLGKVQLEVESLDLVEQVREALNTQELAAEGKDQVLELH 353

Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749
                  +L D   ++Q+  N+LSNAI FTP+ G+I +      +  +++ V D+G G+ 
Sbjct: 354 APPTPCLVLGDATRLQQVLWNLLSNAIKFTPAHGRIDVKIE-RDDGHLVVSVCDSGDGIA 412

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIF 808
              L      F Q   +   +  G GLGL + + +V+ + G+    S    KG    +  
Sbjct: 413 AEFLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQLVEMHGGQVGATSGGRGKGATFTVRL 472

Query: 809 P 809
           P
Sbjct: 473 P 473



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 47/463 (10%), Positives = 117/463 (25%), Gaps = 48/463 (10%)

Query: 54  FTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM 113
           F D  +         +SE  F        +   W +DA G ++ ++    +  G      
Sbjct: 92  FMDITERKRVERELAESEARFSALADGLPMP-VWVLDAQGVVRFVNSAYGEFFGLDISSG 150

Query: 114 IGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172
                 ++     +      +   L+ Q            +G   +  I++ A P YS +
Sbjct: 151 TVSAWSELLHPDDLPTFQFELAASLQEQRGLRALVRARRHDG--QWRWIEMTATPRYSAD 208

Query: 173 REFSGFRGFG-IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231
             F G  G    V   R     R      ++   +  E        E         ++P 
Sbjct: 209 GRFIGLAGSSPDVTEQREIELAREQLLESERSARNEAESMARLKD-EFLATLSHELRTPL 267

Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291
             +   +++               +       +++  + +  D  ++ L +   +     
Sbjct: 268 TTILGWSELLLQRVEEGQPYYKGLSVIASSARAQKRLISDMLDLSSMLLGKVQLEVESLD 327

Query: 292 LQN---NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSF 348
           L      +  + E  +      L  +      L      +     +      + +  P+ 
Sbjct: 328 LVEQVREALNTQELAAEGKDQVLELHAPPTPCLVLGDATRLQQVLWNLLSNAIKF-TPAH 386

Query: 349 LLLTKYKSVDDI-------EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401
             +      DD        +   G++                    +     +  +    
Sbjct: 387 GRIDVKIERDDGHLVVSVCDSGDGIAAEFLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQ 446

Query: 402 TIQWNREN-----------SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR----K 446
            ++ +              +     +P    +Q      +             +     +
Sbjct: 447 LVEMHGGQVGATSGGRGKGATFTVRLPEHIPDQAKRPRRELRRRLMSEQIVEARALNGLR 506

Query: 447 MEIEVMQ------LCSILE----------ATSDGIAIINREGI 473
           +     Q      L  +LE          + +D +A+I+  G 
Sbjct: 507 LLAVEDQPDMLDYLRRLLEEQGAEVVTAGSATDALALIDHRGH 549



 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/173 (10%), Positives = 51/173 (29%), Gaps = 11/173 (6%)

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLT 352
             ++ +  ++       +     E E       D  P+P +V    G + + N ++    
Sbjct: 84  EQARVAILFMDITERKRVERELAESEARFSALADGLPMPVWVLDAQGVVRFVNSAYGEFF 143

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
                  ++I+ G  +        D+       L  S +      A L   + +      
Sbjct: 144 G------LDISSGTVSAWSELLHPDDLPTFQFELAASLQEQRGLRA-LVRARRHDGQWRW 196

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRI---NKRKMEIEVMQLCSILEATS 462
           +      + +     +   G  P+  + R     + ++        +  E+ +
Sbjct: 197 IEMTATPRYSADGRFIGLAGSSPDVTEQREIELAREQLLESERSARNEAESMA 249



 Score = 43.1 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 14/110 (12%), Positives = 38/110 (34%), Gaps = 5/110 (4%)

Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530
           + +I +TN A  +  G     +        L ++     + Y     + +    +     
Sbjct: 10  DYVIRTTNGAFERYTGLSPNALNV-SIRNLLPEHEQEWFDRYGHVARTGNR---IHFEMQ 65

Query: 531 GSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
               + +  S+       P  +  ++   DI+E K+ + +L+ ++     
Sbjct: 66  AKALK-RWYSVDAFRVGQPEQARVAILFMDITERKRVERELAESEARFSA 114


>gi|218441977|ref|YP_002380306.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
 gi|218174705|gb|ACK73438.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
          Length = 1058

 Score =  339 bits (869), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 99/397 (24%), Positives = 178/397 (44%), Gaps = 38/397 (9%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            +++    +L   LEA   GI++ +  G +   NR   ++ G       +K         
Sbjct: 436 AELQNTQHRLNQFLEAIPVGISVHDTTGKLYYANRKSQEILGITSPLDAQKEQLSQAYHT 495

Query: 505 TPSVMNHY-------LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS-- 555
             +  N         +   L  +     +       ++ K++ + +    +         
Sbjct: 496 YQAGTNQLYPIETMPVIRALRGETAYVEDMEL---HQDNKIIPIEVWATPIYDDQGQIVY 552

Query: 556 --LTMHDISEWKQEKN------------------KLSHAKKIAEKESSHKSDFLARVSHE 595
                 DI++ K  +                   +L+ AK+ AE  +  KS F+A +SHE
Sbjct: 553 AIAAFQDITQRKHTEQLLADYNHTLEKQVIQRTAELAEAKEKAEVANQAKSRFIANMSHE 612

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           +RTPL AI+GFS+++      P   P + E    I+RSG  +L ++N++L ++KIE+GK 
Sbjct: 613 LRTPLNAILGFSQLMNRSTTLP---PEHQENIQIINRSGEYLLTLINNILTLAKIEAGKT 669

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSN 714
           +L+     L   ++E   +  L A +K + +       IP+ I  D   ++++ +N+LSN
Sbjct: 670 SLNLSNFDLYSLLNEIEEIFYLAAKKKNLNLTFERDKTIPQYIRTDEVKLREVLINLLSN 729

Query: 715 AIHFTPSGGQ-IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
           AI FTP G   + + T       ++  V+DTGVG+T  EL+     F Q  + +  + EG
Sbjct: 730 AIKFTPRGDILVDVQTLSQKPITLLFTVKDTGVGITPEELDILFDAFSQTQSGKNSQ-EG 788

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           TGLGL +++  V+   G+  + S  A GT+     P+
Sbjct: 789 TGLGLAISRQFVELMGGELTVDSQIAVGTIFRFTLPV 825


>gi|306845222|ref|ZP_07477798.1| PAS domain S-box-containing protein [Brucella sp. BO1]
 gi|306274381|gb|EFM56188.1| PAS domain S-box-containing protein [Brucella sp. BO1]
          Length = 783

 Score =  339 bits (869), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 123/543 (22%), Positives = 227/543 (41%), Gaps = 54/543 (9%)

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEI 362
                        + +      + +     + +       Y + S   +  Y++ D +  
Sbjct: 241 QAARAREADDLSGQIQRRIDMALARGRCGLWDWDMARGRIYWSRSMYEMLGYEAQDAVLP 300

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
            G ++ +++       +  +      +         R+  ++    + + M       + 
Sbjct: 301 FGDVAAIINEEDGDLYSIAEQA----AAGDISHVD-RVFRMRHADGSWVWMRVRAEIASE 355

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
                +   GI  +  +     ++     M++   +E  S+   + +    ++  N   S
Sbjct: 356 GD---LHLVGIAFDVSEQHRFAQQTAEADMRIREAIENISEAFVLWDANNRLVMANSKFS 412

Query: 483 KLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
           +  G PV  +    P         P      +    +    QT E+       + + L +
Sbjct: 413 EYAGLPVWTLKPGVPRNEVDAHTRPFTFERRMANEHNRAGGQTFERQL----SDGRWLQV 468

Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH---------------------------- 573
               ++            DI++ K  + +L                              
Sbjct: 469 N---ERRTQDGGMVSIGTDITQLKLHQERLVDSERRLMATVHDLSIARKGERDRVRELSE 525

Query: 574 -------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
                   K+ AE  +  KS+FLA +SHE+RTPL AIIGFSE+I+   FGPLG+ RY EY
Sbjct: 526 LARKYSLEKERAEAANRAKSEFLANMSHELRTPLNAIIGFSEMIQAGTFGPLGSDRYEEY 585

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
            N I  SGN +L+++ND+LD+SKIE+G  +L  E + L   ++E + ++ L A EK I +
Sbjct: 586 INDIHTSGNFLLNVINDILDMSKIEAGHFSLDREEIDLCPLINETVRIISLQAEEKNIAV 645

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
            T   + +  + AD R++KQ+ +N+LSNA+ FT  GG+I +    T    + + ++DTGV
Sbjct: 646 ETRIEDAM-ELYADRRAIKQVLINLLSNAVKFTSYGGRITVRARKT-GAALFMTIQDTGV 703

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+    L K  +PF Q+ N       G+GLGL +++++ + + G   I ST   GT++ +
Sbjct: 704 GIPKSALRKIGQPFEQVENQFTKTHTGSGLGLAISRSLAELHGGWLRIRSTERVGTVVSV 763

Query: 807 IFP 809
             P
Sbjct: 764 CIP 766



 Score = 41.2 bits (95), Expect = 0.72,   Method: Composition-based stats.
 Identities = 30/254 (11%), Positives = 61/254 (24%), Gaps = 18/254 (7%)

Query: 86  TWNID-AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN--HIGDLLKRQNT 142
            W+ D A G +   S  + + +G  A   + +   DV+ I++ +  +   I +     + 
Sbjct: 270 LWDWDMARGRI-YWSRSMYEMLGYEAQDAV-LPFGDVAAIINEEDGDLYSIAEQAAAGDI 327

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
            +             +V + + A      +    G     I       +         D 
Sbjct: 328 SHVDRVFRMRHADGSWVWMRVRAEIASEGDLHLVG-----IAFDVSEQHRFAQQTAEADM 382

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
           +     E       +      +    S          V +L       +    T      
Sbjct: 383 RIREAIENISEAFVLWDANNRLVMANSKFSEY-AGLPVWTLKPGVPRNEVDAHTRP---F 438

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG---- 318
           T E     E          +      +  +     +    +S     +      E     
Sbjct: 439 TFERRMANEHNRAGGQTFERQLSDGRWLQVNERRTQDGGMVSIGTDITQLKLHQERLVDS 498

Query: 319 ENLTPETVDKCPIP 332
           E     TV    I 
Sbjct: 499 ERRLMATVHDLSIA 512


>gi|186682272|ref|YP_001865468.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186464724|gb|ACC80525.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 713

 Score =  339 bits (869), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 94/391 (24%), Positives = 170/391 (43%), Gaps = 19/391 (4%)

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
           ++ E ++ +     +     +   + EA    +   N  G     N+   +  G  +E  
Sbjct: 178 LQQEILERQRILEVLRQSEERYRYLAEAIPQLVWTTNANGECDFFNQNWCEYTGLTLEQS 237

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK-EEKLLSLRIIIKKLPFS 551
           L   +   L  +     +   +  +      T           +            L   
Sbjct: 238 LGSGWLAALHPDDIQNADQIWSNAVKN--STTYNNEYRFKRASDGSYRWQLARGLPLKDE 295

Query: 552 SCYSL----TMHDISEWKQEKNKLSH-------AKKIAEKESSHKSDFLARVSHEIRTPL 600
               +    T  DI E KQ   + +H       A+  AE  +  K +FLA +SHE+RTPL
Sbjct: 296 QGIVVKWFGTCTDIHEQKQILEERAHLLELEQIARAKAETANRIKDEFLAILSHELRTPL 355

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
            AI+G+S++++++R   L   +  +    I+++ NL + ++ DLLDIS+I  GK+ L   
Sbjct: 356 NAILGWSKLLQSRR---LDQEKTSQALATIEKNANLQVQLIEDLLDISRILQGKLTLDIT 412

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720
            ++L   +  A+  ++L A  K I + T F  N+ +++ D   ++Q+  N+LSNA+ FTP
Sbjct: 413 KINLKSTILSALETMRLAAETKLIEVSTVFEPNVGQVMGDSTRLQQVVWNLLSNALKFTP 472

Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
            GG+I +     ++    + V DTG G++   L      F Q  ++      G GLGL +
Sbjct: 473 KGGKIEVRLE-QADGYAQIIVSDTGKGISPEFLPFVFDYFRQADSTSTRNFGGLGLGLAI 531

Query: 781 AKAMVDANMGKFYIFST-PAKGTLIEIIFPL 810
            + +V+ + G     S    KG +  +  PL
Sbjct: 532 VRNIVEIHGGIVKAKSEGEDKGAIFTVSLPL 562



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/169 (11%), Positives = 44/169 (26%), Gaps = 5/169 (2%)

Query: 69  DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID 128
            SE  + +       +  W  +A+G     ++   +  G    + +G           I 
Sbjct: 194 QSEERYRYLAEAIP-QLVWTTNANGECDFFNQNWCEYTGLTLEQSLGSGWLAALHPDDIQ 252

Query: 129 PNNHIGD-LLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187
             + I    +K   T+  +         +         LP+          + FG     
Sbjct: 253 NADQIWSNAVKNSTTYNNEYRFKRASDGSYR-WQLARGLPLKDEQGIVV--KWFGTCTDI 309

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM 236
                       L +         +  + ++ E   I S +   P   +
Sbjct: 310 HEQKQILEERAHLLELEQIARAKAETANRIKDEFLAILSHELRTPLNAI 358


>gi|297617002|ref|YP_003702161.1| PAS/PAC sensor signal transduction histidine kinase
           [Syntrophothermus lipocalidus DSM 12680]
 gi|297144839|gb|ADI01596.1| PAS/PAC sensor signal transduction histidine kinase
           [Syntrophothermus lipocalidus DSM 12680]
          Length = 352

 Score =  339 bits (869), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 88/360 (24%), Positives = 170/360 (47%), Gaps = 23/360 (6%)

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
            E  ++ +IL    DG+  ++R+GI+   N+A  ++F    E ++ +PF   +   +   
Sbjct: 13  RERNKMKAILTTLVDGVMAVSRDGIVTLANKAAEEIFKARHEGLVGRPFASLV---SSQE 69

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568
           +N  L ++     +   E            + +  I  +        +  HD+++ ++  
Sbjct: 70  LNQMLEDVFETGRQIFTETALEQCLFR---VQMAAINGEKGDVEGAVVVFHDVTDARKF- 125

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
                           +S+F+A VSHE+RTPLTAI GF E + +             +  
Sbjct: 126 -------------DQMRSEFVANVSHELRTPLTAIKGFVETLLDGAL--EDKLICRRFLT 170

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I+   N +  +++DLL +S IES +  L  +PV L  ++ + ++++   A EKR+ +  
Sbjct: 171 IIEGENNRLTRLIDDLLTLSAIESRERKLTLKPVCLVTSIIQVMNILGPQAREKRLHLEL 230

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748
            F  ++P + AD   V Q+ +N++ NAI +T  GG+I+I       ++V   + DTG G+
Sbjct: 231 IFNRDLPPVKADEDLVGQVLINLIDNAIKYTSPGGKIVIRVK-RGGDQVFTSITDTGTGI 289

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
               L +  + F ++  ++     GTGLGL + K +V+++ G+ ++ S   KG+      
Sbjct: 290 PQESLPRLFERFYRVDKARSRELGGTGLGLAIVKHIVESHGGEVFVESELGKGSTFGFSL 349


>gi|17227678|ref|NP_484226.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17135160|dbj|BAB77706.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 715

 Score =  339 bits (869), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 99/437 (22%), Positives = 177/437 (40%), Gaps = 27/437 (6%)

Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450
              +   A L   Q + E  + +       AN+         ++ +  + +     +   
Sbjct: 140 GERLKVEAELRKYQNHLEELVTIRTNEITNANEK--------LQQQINERQHIVEILRES 191

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
             +   + EA    +   +  G     N+      G  +E+ L   +   L         
Sbjct: 192 EERYRYLAEAIPQLVWTADANGECDYFNQNWCDYTGLNLEESLGSGWLAALHLEDLERSY 251

Query: 511 HYLTEILSLDLRQTLEKITLG-STKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWK 565
              ++ +        E         +     L      L         +  T  DI E K
Sbjct: 252 ETWSKAVETGA--LYENEYRFKRAADGSYRWLLGRGLPLKDHQGRVVKWFGTCTDIHEQK 309

Query: 566 QEKNKL-------SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
           Q   +          A+  AE  +  K +FLA +SHE+RTPL AI+G+S++++ ++  P 
Sbjct: 310 QILEERARLLELEQTARAEAETANRIKDEFLAVLSHELRTPLNAILGWSKLLQERKLDPT 369

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
              R  +    I+R+  L + ++ DLLDIS+I  GK+ ++   V+L   +  A+  ++L 
Sbjct: 370 ---RTFQALATIERNATLQVQLIEDLLDISRILQGKLVINITKVNLVTVILAALETMRLA 426

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738
           A  K I + T+F  NI +++ D   ++Q+  N+LSNA+ FTP+GG+I ++          
Sbjct: 427 AESKLIQVLTNFPPNIGQVMGDSARLQQVVWNLLSNAVKFTPNGGKIEVTLDKME-GYAQ 485

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-T 797
           + V DTG G+    L      F Q  +S   R  G GLGL + + +V+ + G     S  
Sbjct: 486 IVVSDTGKGIQPEFLPYVFDYFRQADSSSTRRFGGLGLGLAIVRKIVEIHGGTVTAQSLG 545

Query: 798 PAKGTLIEIIFPLYDTS 814
             +G    +  P+    
Sbjct: 546 EEQGASFTVRLPILPEE 562



 Score = 70.8 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 17/169 (10%), Positives = 46/169 (27%), Gaps = 5/169 (2%)

Query: 69  DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID 128
           +SE  + +       +  W  DA+G     ++      G    + +G        +  ++
Sbjct: 190 ESEERYRYLAEAIP-QLVWTADANGECDYFNQNWCDYTGLNLEESLGSGWLAALHLEDLE 248

Query: 129 PNNHIG-DLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187
            +       ++    +  +         +    +    LP+          + FG     
Sbjct: 249 RSYETWSKAVETGALYENEYRFKRAADGSYR-WLLGRGLPLKDHQGRVV--KWFGTCTDI 305

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM 236
                      RL +         +  + ++ E   + S +   P   +
Sbjct: 306 HEQKQILEERARLLELEQTARAEAETANRIKDEFLAVLSHELRTPLNAI 354


>gi|308174101|ref|YP_003920806.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens
           DSM 7]
 gi|307606965|emb|CBI43336.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens
           DSM 7]
 gi|328552770|gb|AEB23262.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens
           TA208]
 gi|328912432|gb|AEB64028.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens
           LL3]
          Length = 593

 Score =  339 bits (869), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 90/364 (24%), Positives = 157/364 (43%), Gaps = 24/364 (6%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            +  E  QL +IL + +DG+  IN +G IL TN    +           +   +    N 
Sbjct: 247 ALNQEKEQLSNILSSMADGVITINIDGTILVTNPPAERFL---QAWYYEQNMNIKEGDNL 303

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
           P          +S +  Q +E    G       + L   +            + D++E +
Sbjct: 304 PPEAKELFQNAVSTEKEQMIEMTLQGR----SWVLLMSPLYAESHVRGAVAVLRDMTEER 359

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           +                  + DF+A VSHE+RTP++ + G+SE I +            E
Sbjct: 360 RL--------------DKLREDFIANVSHELRTPISMLQGYSEAIVDDI--ASTEEEKKE 403

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
            A  I      +  +VNDLLD++++ESG   LH+E V+L E + +        A EK + 
Sbjct: 404 IAQIIYDESLRMGRLVNDLLDLARMESGHTGLHYETVNLHEFLEKISRKFSGVAKEKGVS 463

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +    A + P  + D   ++Q+  N++ NA+  T SGG + I+     +  + + ++D+G
Sbjct: 464 LTEDIAVSQPECVFDEDKMEQVFTNLIDNALRHTESGGSVHIAAQTVKDG-LKIDIKDSG 522

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
            G+   +L    + F +   ++     GTGLGL + K +V+A+ G   + S+  KGT   
Sbjct: 523 SGIPEEDLPFIFERFYKADKARTRGRAGTGLGLAIVKNIVEAHGGSIAVHSSIDKGTAFT 582

Query: 806 IIFP 809
              P
Sbjct: 583 FYIP 586


>gi|320353326|ref|YP_004194665.1| signal transduction histidine kinase, nitrogen specific, NtrB
            [Desulfobulbus propionicus DSM 2032]
 gi|320121828|gb|ADW17374.1| signal transduction histidine kinase, nitrogen specific, NtrB
            [Desulfobulbus propionicus DSM 2032]
          Length = 1165

 Score =  339 bits (869), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 115/768 (14%), Positives = 230/768 (29%), Gaps = 73/768 (9%)

Query: 87   WNIDAHGY--LKEISEELPKTIGNYAFKMIGMRLCDVSDILH----IDPNNHIGDLLKRQ 140
            + +   G       S  +         ++      D + +       D +     +L   
Sbjct: 291  YRLYPDGRSCFPYASPGIWNIYEVTPEQVR----EDAAPVFDRLHPADHDRVAEAILASA 346

Query: 141  NT----WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRAL 196
             T    +     + P +G   Y      A P    +    G    GI+            
Sbjct: 347  RTLETFFCEFKVILPRQGLRWYWSQ---AQPQRLEDG---GTLWHGIISDITARKQAEET 400

Query: 197  GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH-----LRMKNKVSSLTEYYAHKD 251
             +  +     + +       V   +  +    +          R   ++S          
Sbjct: 401  LRAREHYLHTILQTSVEGFWVLDTQGRVVEVNNAYLAMTGYSRREILRLSISDLDAIESP 460

Query: 252  DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY-LSHRNHPS 310
            D +      ++ +       +      + + +  +     L         +         
Sbjct: 461  DQIAVRIQRIIANGSELFESRH--RRKDGSLFPVEVSVTWLDEEGGRMVCFCRDLSERKR 518

Query: 311  LSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
                      L    ++       V+       Y +  +L +   K  D I         
Sbjct: 519  AEEALRHSHELMRHLIEHTNSGVAVHDRNLRYVYVSQRYLEMYGLKGRDVIGQ------- 571

Query: 370  LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
                 +  +   K   ++R   T    SA+               +              
Sbjct: 572  -HHYDIFPDLPEKWRDVHRQVLTGKTMSAKRDPYVRADGTMEWTRWECRPWYESPGTIGG 630

Query: 430  QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
                     +  + +  +        ++++A+   I  ++ EG +LS NRA  ++FG+  
Sbjct: 631  LIVYTEVITEQVLAEEALRKSEEFQRALIDASPLAIISLDPEGQVLSWNRAAERIFGWSE 690

Query: 490  EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
            ++ L + F +         +    T IL+ +    L        K+   + + +    + 
Sbjct: 691  KEALGQ-FLLIGNSEQAETLAALRTRILAGETLSRL--ELHLCHKDGSPIVVSLSTAPIR 747

Query: 550  FSSCYSL----TMHDISEWKQEKNK--LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
                  +     + DISE K+ + +  L   +    ++          ++H+    L  I
Sbjct: 748  NPDGELIAIMSVLEDISERKRAEEEKKLLAVQLQQAQKMEAIGTLAGGIAHDFNNLLGVI 807

Query: 604  IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
            IG+ E+ K          R       I  +G    D+V  +L   +    + N+   P+ 
Sbjct: 808  IGYGEIAKEALPDHSTTARD---LEKILEAGERAADLVKQILAFGR----RANVEKIPLE 860

Query: 664  LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS-G 722
                V EA+ L++       I IR   +     ILAD   + QI +N+ +NA H     G
Sbjct: 861  PVHLVKEAVKLLRATLPS-TITIRQQLSARTGTILADPTQIHQIVMNLCTNAFHAMEQTG 919

Query: 723  GQIIISTT--------------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
            G + I+                    + V+L V DTG G+     +K  +P+        
Sbjct: 920  GVLDITLAECERDVQDLLYHPQVRPGKFVVLTVADTGPGIPPEIRDKIFEPYFTTKG--- 976

Query: 769  IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
              G+GTGLGL +   +V    G     S P +GT   +  P ++ S P
Sbjct: 977  -VGKGTGLGLAIVHGIVADTGGFITCESEPGQGTAFHVFLPAHEASVP 1023



 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 62/520 (11%), Positives = 150/520 (28%), Gaps = 31/520 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +DA G L ++++    ++G    ++IG    D            +   ++  +   G   
Sbjct: 44  LDAAGRLADVNQAWLDSLGYTREEVIGRAFTDFLPPDQRQCFGGMMSRIEALDEILGAEL 103

Query: 149 LWP-IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                +G+ L+   ++ A             R   I              +  +     +
Sbjct: 104 AMAARDGSTLWGACNIRAE--RDAQGRLLKTRWVFI--DITARLLAENERRENEMHLKAI 159

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPP---HLRMKNKVSSLTE---YYAHKDDVLKTEKYPL 261
                    +   +              H+ + + +          A  +   +  +  +
Sbjct: 160 LNASTETIQLLDTEGRTIIANEASAKRLHVSVDDLIGRPVFDFFPPAVAEQRRECCRQVV 219

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
            T +  ++ ++ D        Y      G ++  +  S          ++     E   L
Sbjct: 220 ATGQPLTVQDERDGIAFEAYLYPVADEQGVVRRIALFSM---DITRRKAMERQLAESHAL 276

Query: 322 TPETVDKCPIPFFVYS---HGN--LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
                ++ P   + Y     G     YA+P    + +       E A  +   L      
Sbjct: 277 LANLANQVPGVVYQYRLYPDGRSCFPYASPGIWNIYEVTPEQVREDAAPVFDRLHPADHD 336

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
                        +         L                P    +        +GI  +
Sbjct: 337 RVAEAILASARTLETFFCEFKVIL---PRQGLRWYWSQAQPQRLEDG---GTLWHGIISD 390

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
               +  +  +      L +IL+ + +G  +++ +G ++  N A   + GY   +ILR  
Sbjct: 391 ITARKQAEETLRAREHYLHTILQTSVEGFWVLDTQGRVVEVNNAYLAMTGYSRREILRLS 450

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556
            +      +P  +   +  I++          +    K+  L  + + +  L       +
Sbjct: 451 ISDLDAIESPDQIAVRIQRIIANGSEL---FESRHRRKDGSLFPVEVSVTWLDEEGGRMV 507

Query: 557 TM-HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
               D+SE K+ +  L H+ ++      H +  +A   H+
Sbjct: 508 CFCRDLSERKRAEEALRHSHELMRHLIEHTNSGVAV--HD 545


>gi|225627123|ref|ZP_03785161.1| PAS domain S-box-containing protein [Brucella ceti str. Cudo]
 gi|225617958|gb|EEH15002.1| PAS domain S-box-containing protein [Brucella ceti str. Cudo]
          Length = 798

 Score =  338 bits (868), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 123/543 (22%), Positives = 227/543 (41%), Gaps = 54/543 (9%)

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEI 362
                        + +      + +     + +       Y + S   +  Y++ D +  
Sbjct: 256 QAARAREADDLSGQIQRRIDMALARGRCGLWDWDMARGRIYWSRSMYEMLGYEAQDAVLP 315

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
            G ++ +++       +  +      +         R+  ++    + + M       + 
Sbjct: 316 FGDVAAIINEEDGDLYSIAEQA----AAGDISHVD-RVFRMRHADGSWVWMRVRAEIASE 370

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
                +   GI  +  +     ++     M++   +E  S+   + +    ++  N   S
Sbjct: 371 GD---LHLVGIAFDVSEQHRFAQQTAEADMRIREAIENISEAFVLWDANNRLVMANSKFS 427

Query: 483 KLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
           +  G PV  +    P         P      +    +    QT E+       + + L +
Sbjct: 428 EYAGLPVWTLKPGVPRNEVDAHTRPFTFERRMANEHNRAGGQTFERQL----SDGRWLQV 483

Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH---------------------------- 573
               ++            DI++ K  + +L                              
Sbjct: 484 N---ERRTQDGGMVSIGTDITQLKLHQERLVDSERRLMATVHDLSIARKGERDRVRELSE 540

Query: 574 -------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
                   K+ AE  +  KS+FLA +SHE+RTPL AIIGFSE+I+   FGPLG+ RY EY
Sbjct: 541 LARKYSLEKERAEAANRAKSEFLANMSHELRTPLNAIIGFSEMIQAGTFGPLGSDRYEEY 600

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
            N I  SGN +L+++ND+LD+SKIE+G  +L  E + L   ++E + ++ L A EK I +
Sbjct: 601 INDIHTSGNFLLNVINDILDMSKIEAGHFSLDREEIDLCPLINETVRIISLQAEEKNIAV 660

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
            T   + +  + AD R++KQ+ +N+LSNA+ FT  GG+I +    T    + + ++DTGV
Sbjct: 661 ETRIEDAM-ELYADRRAIKQVLINLLSNAVKFTSYGGRITVRARKT-GAALFMTIQDTGV 718

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+    L K  +PF Q+ N       G+GLGL +++++ + + G   I ST   GT++ +
Sbjct: 719 GIPKSALRKIGQPFEQVENQFTKTHTGSGLGLAISRSLAELHGGWLRIRSTERVGTVVSV 778

Query: 807 IFP 809
             P
Sbjct: 779 CIP 781



 Score = 41.2 bits (95), Expect = 0.74,   Method: Composition-based stats.
 Identities = 30/254 (11%), Positives = 61/254 (24%), Gaps = 18/254 (7%)

Query: 86  TWNID-AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN--HIGDLLKRQNT 142
            W+ D A G +   S  + + +G  A   + +   DV+ I++ +  +   I +     + 
Sbjct: 285 LWDWDMARGRI-YWSRSMYEMLGYEAQDAV-LPFGDVAAIINEEDGDLYSIAEQAAAGDI 342

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
            +             +V + + A      +    G     I       +         D 
Sbjct: 343 SHVDRVFRMRHADGSWVWMRVRAEIASEGDLHLVG-----IAFDVSEQHRFAQQTAEADM 397

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
           +     E       +      +    S          V +L       +    T      
Sbjct: 398 RIREAIENISEAFVLWDANNRLVMANSKFSEY-AGLPVWTLKPGVPRNEVDAHTRP---F 453

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG---- 318
           T E     E          +      +  +     +    +S     +      E     
Sbjct: 454 TFERRMANEHNRAGGQTFERQLSDGRWLQVNERRTQDGGMVSIGTDITQLKLHQERLVDS 513

Query: 319 ENLTPETVDKCPIP 332
           E     TV    I 
Sbjct: 514 ERRLMATVHDLSIA 527


>gi|87308220|ref|ZP_01090362.1| ammonium/methylammonium permease [Blastopirellula marina DSM 3645]
 gi|87289302|gb|EAQ81194.1| ammonium/methylammonium permease [Blastopirellula marina DSM 3645]
          Length = 1259

 Score =  338 bits (868), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 91/434 (20%), Positives = 177/434 (40%), Gaps = 28/434 (6%)

Query: 392 TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV 451
             I     +   +   + S  +   P  +  Q      +   +      + ++ +     
Sbjct: 403 ELIDLLTDMQRQRNLGDFSDDVHVEPHTEVGQIAAEYNRVLAKVNCEMKQRSEAE----- 457

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT--PSVM 509
            +   I E   +GI     EG  ++ N A++++ GYP    LR                 
Sbjct: 458 RRFREIFENAVEGIYQTTPEGFFVTANPALARMLGYPDLASLRDDIKNVATDVYVNRDRR 517

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS----LTMHDISEWK 565
           + ++ EI    +       +     +     +          +        T+ DI+E +
Sbjct: 518 DEFVDEIHQNGV--VFNFESEIRRGDGTFAWISENASARRNQNGDVLYYEGTVEDITEHR 575

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           +   +L+   K AE  +  KS FLA +SHEIRTPL  +IGF +++   +     + +   
Sbjct: 576 KA-LQLTDEIKAAEAANEAKSTFLASMSHEIRTPLNGVIGFLDLLHTTKL----DDQQGR 630

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           +      S + +L ++ND+LD+SKIE+G + L      L + +     +         + 
Sbjct: 631 FVELAKSSASSLLHLINDILDLSKIEAGGIELEQTEFVLTDLIESVPEMFAPQCRMTGLE 690

Query: 686 IRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN--------EE 736
           + +S A ++P+  + D   ++Q+ +N+ +NA+ FT +GG + +      +          
Sbjct: 691 LNSSVATDVPQAAIGDCERIRQVLVNLFANAVKFTETGG-VYLRVERERSVASSHDAIAR 749

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           +   V DTG+G+   ++++  K F Q+  S      GTGLGL + K +V+   G+  + S
Sbjct: 750 IRFSVEDTGIGVPRSKMQRLFKAFSQVDASTTRSYGGTGLGLAICKQLVELMGGEIGVES 809

Query: 797 TPAKGTLIEIIFPL 810
              KG+      PL
Sbjct: 810 EVGKGSTFWFTLPL 823



 Score = 46.2 bits (108), Expect = 0.025,   Method: Composition-based stats.
 Identities = 12/117 (10%), Positives = 40/117 (34%), Gaps = 7/117 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH---IGDLLKRQNT 142
            +     G+    +  L + +G      +   + +V+  ++++ +     + ++ +    
Sbjct: 471 IYQTTPEGFFVTANPALARMLGYPDLASLRDDIKNVATDVYVNRDRRDEFVDEIHQNGVV 530

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199
           +  ++ +   +GT  +  I   A    ++N +   + G   V           L   
Sbjct: 531 FNFESEIRRGDGT--FAWISENASARRNQNGDVLYYEG--TVEDITEHRKALQLTDE 583


>gi|326317598|ref|YP_004235270.1| signal transduction histidine kinase with CheB and CheR activity
            [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323374434|gb|ADX46703.1| signal transduction histidine kinase with CheB and CheR activity
            [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 1534

 Score =  338 bits (868), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 98/640 (15%), Positives = 207/640 (32%), Gaps = 35/640 (5%)

Query: 194  RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253
              LG       + +         ++++        S      +          +      
Sbjct: 762  DELGHANSDMQNLMDATAIATVFLDRDLRITRFTPSAVTLFNLIATDVGRPLSHLRTQLQ 821

Query: 254  LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN--SKESFEYLSHRNHPSL 311
                        E     + +    + N Y  +       ++  +     ++        
Sbjct: 822  YPELSEDARRVLERLALVEREVGASDGNWYLVRMLPYRTLDDRIAGVVLTFVDISERKQG 881

Query: 312  SAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
                   E+     V++  +        G++ + N  +  +  Y   + I       T L
Sbjct: 882  QEALRRSEDRFSAIVNQAVVGVVQTELDGHITFVNRHYSHMLGYGHDELIG------TQL 935

Query: 371  DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
                   +  +   ++ R              ++ +    L +       A+        
Sbjct: 936  LDLIHPADRQLSAHLMRRLAEHGEPFHIEKRCLRKDGST-LWLHNSVSYLADAHGGPTAS 994

Query: 431  NGIEPEDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPV 489
              +  +  + +  +  +     +L  ++E   +  I   + +  I + N    ++ GY  
Sbjct: 995  IVVCNDISERKRAENALRESTERLRLVIENAVEYAIFSTDLDRRITTWNSGAERILGYSE 1054

Query: 490  EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
             + + +   +       +          +L     L+   L   K+         +  + 
Sbjct: 1055 NEAVGQLADMIFTPEDRAAGAPLSETSTALATGGALD-DRLHQRKDGSRFWASGALMPMH 1113

Query: 550  FSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSH--------------KSDFLAR 591
              +     +   + D S+ +  +  L  ++    K                  K  FLA 
Sbjct: 1114 DDADTVVGFVKILRDQSDQRASQQALEQSRADLLKALRENEEARAALQAADATKDRFLAV 1173

Query: 592  VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
            +SHE+R PL +I G S V+  +        +    A  + R    +  +++DL+D+S++ 
Sbjct: 1174 LSHELRNPLASIAGASAVLATEGAATGDRDQA---ARIVQRQARAMAVLLDDLMDLSRLR 1230

Query: 652  SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
             G+M L    V LDE V  A+                    +   +LAD   + Q+  N+
Sbjct: 1231 LGRMVLQQREVPLDEIVEAALEATLGAIRAAGHDFVQELPADTVMLLADPVRIAQVLANL 1290

Query: 712  LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
            LSNA  +TP  G+I +S   T    + LRV D G+GM    ++     F Q P++     
Sbjct: 1291 LSNAAKYTPDHGRIRLS-AWTEGGSIYLRVEDNGIGMDPETVDDMFTMFSQSPDAGMRHT 1349

Query: 772  EGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFPL 810
            +G G+GL L + +V+ + G     S  P +G+   +  PL
Sbjct: 1350 QGLGIGLALVRNIVEMHQGTVRGESAGPGQGSRFTVQLPL 1389



 Score =  134 bits (338), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 68/496 (13%), Positives = 142/496 (28%), Gaps = 57/496 (11%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            +D    +  +S    + +  +  +                P+ ++  L+        +  
Sbjct: 576  VDGEQNILHMSPSAGRFLVFHGGE----------------PSRNLMRLIHPALRIELRAA 619

Query: 149  LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD-KKFSHL 207
            L+    T    P+ LAA P+             G V V         LG  L       L
Sbjct: 620  LYRAGRTGQ--PMRLAATPV-DAAG--------GRVRVAPEVRPVPELGPGLALVLLQML 668

Query: 208  HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
             E+   H    +   D  ++Q       +  ++  L        +  +     L  S E 
Sbjct: 669  PELPAAHHLAAEVPQDTAAEQ-------LDRELELLNAQLRSTIEQYEASTEELRASNEE 721

Query: 268  SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
                 E+  +      T ++   ++          L  +      A  D    +    + 
Sbjct: 722  LQAMNEELRSATEELETNREELQSINEELTTVNHELKSKVDELGHANSDMQNLMDATAI- 780

Query: 328  KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
                  F+     +    PS + L    + D       L T L  P+LS++       L 
Sbjct: 781  ---ATVFLDRDLRITRFTPSAVTLFNLIATDVGRPLSHLRTQLQYPELSEDARRVLERLA 837

Query: 388  RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
              +R   A          +  N   +  +P+   +             +  + +  +  +
Sbjct: 838  LVEREVGA----------SDGNWYLVRMLPYRTLD--DRIAGVVLTFVDISERKQGQEAL 885

Query: 448  EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
                 +  +I+     G+     +G I   NR  S + GY  ++++       +      
Sbjct: 886  RRSEDRFSAIVNQAVVGVVQTELDGHITFVNRHYSHMLGYGHDELIGTQLLDLIHPADRQ 945

Query: 508  VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISE 563
            +  H +  +                 K+   L L   +  L  +        +  +DISE
Sbjct: 946  LSAHLMRRLAEHGEP--FHIEKRCLRKDGSTLWLHNSVSYLADAHGGPTASIVVCNDISE 1003

Query: 564  WKQEKNKLSHAKKIAE 579
             K+ +N L  + +   
Sbjct: 1004 RKRAENALRESTERLR 1019



 Score = 71.6 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 26/378 (6%), Positives = 105/378 (27%), Gaps = 13/378 (3%)

Query: 88   NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR-QNTWYGK 146
              +  G++  ++      +G    ++IG +L D+        + H+   L      ++ +
Sbjct: 905  QTELDGHITFVNRHYSHMLGYGHDELIGTQLLDLIHPADRQLSAHLMRRLAEHGEPFHIE 964

Query: 147  TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                  +G+ L++   ++ L     +   +      + +            +   ++   
Sbjct: 965  KRCLRKDGSTLWLHNSVSYLA--DAHGGPT--ASIVVCNDISERKRAENALRESTERLRL 1020

Query: 207  LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK----NKVSSLTEYYAHKDDVLKTEKYPLL 262
            + E    ++    +     +  +      +       V  L +     +D          
Sbjct: 1021 VIENAVEYAIFSTDLDRRITTWNSGAERILGYSENEAVGQLADMIFTPEDRAAGAPLSET 1080

Query: 263  TSEESSLPEQEDFHTI--NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
            ++  ++    +D      + +++        + +++     ++      S      +   
Sbjct: 1081 STALATGGALDDRLHQRKDGSRFWASGALMPMHDDADTVVGFVKILRDQSDQRASQQALE 1140

Query: 321  LTPE-TVDKCPIPFFVYSHGNLFYAN-PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
             +    +          +      A    FL +  ++  + +    G S +L     +  
Sbjct: 1141 QSRADLLKALRENEEARAALQAADATKDRFLAVLSHELRNPLASIAGASAVLATEGAATG 1200

Query: 379  NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
            +  +   + +     +A                 +        ++  E   +  +     
Sbjct: 1201 DRDQAARIVQRQARAMAVLLDDLMDLSRLRLGRMVLQQREVPLDEIVEAALEATLGAIRA 1260

Query: 439  DTRINKRKMEIEVMQLCS 456
                  +++  + + L +
Sbjct: 1261 AGHDFVQELPADTVMLLA 1278



 Score = 65.8 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 37/351 (10%), Positives = 91/351 (25%), Gaps = 29/351 (8%)

Query: 86   TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD---LLKRQNT 142
             ++ D    +   +    + +G    + +G     +           + +    L     
Sbjct: 1030 IFSTDLDRRITTWNSGAERILGYSENEAVGQLADMIFTPEDRAAGAPLSETSTALATGGA 1089

Query: 143  WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
                      +G+        A +P++       GF     V + R  +D RA  + L++
Sbjct: 1090 L-DDRLHQRKDGS--RFWASGALMPMHDDADTVVGF-----VKILRDQSDQRASQQALEQ 1141

Query: 203  KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
              + L +  + +                      K++  ++  +              +L
Sbjct: 1142 SRADLLKALRENEEARAALQA---------ADATKDRFLAVLSHELRNPLASIAGASAVL 1192

Query: 263  TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
             +E ++  +++    I   Q                  + +             + E   
Sbjct: 1193 ATEGAATGDRDQAARIVQRQARAMAVLLD---------DLMDLSRLRLGRMVLQQREVPL 1243

Query: 323  PETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
             E V+                        T     D + IA  L+ LL        +  +
Sbjct: 1244 DEIVEAALEATLGAIRAAGHDFVQELPADTVMLLADPVRIAQVLANLLSNAAKYTPDHGR 1303

Query: 383  PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
              +   ++   I      + I  + E    M  +  +  +    +    GI
Sbjct: 1304 IRLSAWTEGGSIYLRVEDNGIGMDPETVDDMFTMFSQSPDAGMRHTQGLGI 1354



 Score = 44.6 bits (104), Expect = 0.061,   Method: Composition-based stats.
 Identities = 39/459 (8%), Positives = 101/459 (22%), Gaps = 20/459 (4%)

Query: 121 VSDILHIDPNNHIGDLLKRQNTWYGK-TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFR 179
           ++     +P    GD    +         L    G +     D     +  R        
Sbjct: 218 LAPPHGTEPPASGGDAADDEAALREVLALLRHRTGRDFG---DYKRATVVRRVGRRMQVN 274

Query: 180 GFGIV--HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK 237
           G G +  +++ +   P   G  L      +    +   +    +  +             
Sbjct: 275 GIGTMSGYLDCLRTRPGESGALLQDLLISVTNFFRDPVAFAALESHLPQLFQGKTGADTL 334

Query: 238 NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297
               +          +         T + + + +       +      +  F      S 
Sbjct: 335 RVWVAGCATGEEAYSIAMLLAEYARTLDTAPVLQIFATDLDDAAIRAARDGFYPAAIESD 394

Query: 298 ESFEYLSH---RNHPSLSAYFDEGENLTPETVDKCPIP-----FFVYSHGNLFYANPSFL 349
            S E L     R         +  E++     D            +     L Y N    
Sbjct: 395 VSAERLRRFFVRERGGYRVRRELRESVLFAVHDLLRDSPFSRLDLISCRNLLIYLNREAQ 454

Query: 350 -LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
             +        +          ++    D        L+R      +A   L        
Sbjct: 455 HRVLDTFHFALLPGKLLFLGSAESVDDGDTRFSVIDKLHRLYGHQTSAHPDLLRPGGLAP 514

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVD---TRINKRKMEIEVMQLCSILEATSDGI 465
            + A+                      +          ++ +    + L  +LE  +   
Sbjct: 515 AAAALHAQHAAHQGPVVHAGAMVPYFADTERPPAQAAGEKALPWGEVHLR-LLEQLAPPS 573

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
            +++ E  IL  + +  +   +   +   +     +       +   L           L
Sbjct: 574 ILVDGEQNILHMSPSAGRFLVFHGGE-PSRNLMRLIHPALRIELRAALYRAGRTGQPMRL 632

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564
               + +      ++  +            + +  + E 
Sbjct: 633 AATPVDAAGGRVRVAPEVRPVPELGPGLALVLLQMLPEL 671


>gi|332971397|gb|EGK10355.1| sensor histidine kinase VicK [Desmospora sp. 8437]
          Length = 595

 Score =  338 bits (868), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 84/369 (22%), Positives = 163/369 (44%), Gaps = 22/369 (5%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           R    + E E  +L S+L   SDG+   +R+G ++ +NR    +    + D       + 
Sbjct: 240 RDALSQNEEEKGRLQSVLANMSDGVIATDRKGKVIVSNRRAEGMLDKKIGDGEEINQVLP 299

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
           L       +       L LD +   E   +  T       +   ++    +    + + D
Sbjct: 300 LANPLVFPVTEMRQTFLELDAQDEEELTVIKLT----FTPV---LRASREAVGLIVVLQD 352

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           ++E ++                  + +F+A VSHE+RTPLT I  + E + ++       
Sbjct: 353 VTEEEKL--------------DRQRKEFVANVSHELRTPLTTIKSYLEAL-DEGGAMEEP 397

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
                +     +    +  +++DLL +S++++ K+     P+ L+  + +A         
Sbjct: 398 ELASRFMRVTRQEAERMTRLIHDLLQLSRLDAEKVRFRKAPLPLESVLVDAADRFAFQCR 457

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
           +K I  + S   ++PR+ AD   + Q+  N+LSNA+ +TP G +I ++    S+  V + 
Sbjct: 458 QKEIDFQLSLEEDLPRVYADRDQIDQVLDNLLSNAVKYTPEGKKISLTARKCSDGYVEVA 517

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V D G+G+   +LE+  + F ++  ++     GTGLGL +A+ +V A+ G   + S   K
Sbjct: 518 VADRGIGIPKKDLERIFERFYRVDKARSRSLGGTGLGLSIAREIVRAHGGSIQLESNYGK 577

Query: 801 GTLIEIIFP 809
           GT +    P
Sbjct: 578 GTTVRFTLP 586


>gi|189423635|ref|YP_001950812.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189419894|gb|ACD94292.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 627

 Score =  338 bits (868), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 97/386 (25%), Positives = 179/386 (46%), Gaps = 26/386 (6%)

Query: 445 RKMEIEVMQLCSILEATSDGIAII----NREGI-----ILSTNRAVSKLFGYPVEDILRK 495
           +++     +  ++ +A  +G A+     + +G      I   N+A  +L G   E ++ K
Sbjct: 110 QRLTSSEERFHALFDAMVEGCALHRIQYSPDGTPVNYVIEEANQAFEQLLGLKREQVVGK 169

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555
           P T   + ++P  +  Y   +++       E       +  ++ + R+          ++
Sbjct: 170 PATEAYQTDSPLYLQEY-ATVVATGQPSRFESCCAPLDRHFRISACRV------GPERFA 222

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
               DI+E K     L    +  +  +  KS FLA +SHEIRTPL  I G  +++++   
Sbjct: 223 TLFEDITEQKSHVETLRSTMQQLKSANEAKSRFLAVMSHEIRTPLNGITGMVQLLRDMEM 282

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
            P       EY N+ID S   +L+++ND+LD SKIE+ ++ L   P    + + + + ++
Sbjct: 283 PPA----QREYLNFIDSSAESLLNVINDILDFSKIEAERLELELVPFQPLKLLHDTLRVM 338

Query: 676 QLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
           +L    K +L+      ++  +L  D   + QI  N++ NAI FT +GG+I++  +  S 
Sbjct: 339 RLRTQAKGLLLSLVCPPDLAEVLVGDPHRLTQILNNLVGNAIKFT-AGGEIVVRASSRSR 397

Query: 735 EE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
            +      + V+D+G+GM     +   +PF Q  +S   R  GTGLGL + K +V+   G
Sbjct: 398 GDGTVLFAVEVQDSGIGMDQATQQTIFEPFIQADSSTSRRFGGTGLGLAICKQLVELMHG 457

Query: 791 KFYIFSTPAKGTLIEIIFPLYDTSHP 816
              + S+P  G+      PL     P
Sbjct: 458 TITVASSPGNGSTFCFAVPLKPGVLP 483


>gi|237815075|ref|ZP_04594073.1| PAS domain S-box-containing protein [Brucella abortus str. 2308 A]
 gi|237789912|gb|EEP64122.1| PAS domain S-box-containing protein [Brucella abortus str. 2308 A]
          Length = 798

 Score =  338 bits (868), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 123/543 (22%), Positives = 227/543 (41%), Gaps = 54/543 (9%)

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEI 362
                        + +      + +     + +       Y + S   +  Y++ D +  
Sbjct: 256 QAARAREADDLSGQIQRRIDMALARGRCGLWDWDMARGRIYWSRSMYEMLGYEAQDAVLP 315

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
            G ++ +++       +  +      +         R+  ++    + + M       + 
Sbjct: 316 FGDVAAIINEEDGDLYSIAEQA----AAGDISHVD-RVFRMRHADGSWVWMRVRAEIASE 370

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
                +   GI  +  +     ++     M++   +E  S+   + +    ++  N   S
Sbjct: 371 GD---LHLVGIAFDVSEQHRFAQQTAEADMRIREAIENISEAFVLWDANNRLVMANSKFS 427

Query: 483 KLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
           +  G PV  +    P         P      +    +    QT E+       + + L +
Sbjct: 428 EYAGLPVWTLKPGVPRNEVDAHTRPFTFERRMANEHNRAGGQTFERQL----SDGRWLQV 483

Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH---------------------------- 573
               ++            DI++ K  + +L                              
Sbjct: 484 N---ERRTQDGGMVSIGTDITQLKLHQERLVDSERRLMATVHDLSIARKGERDRVRELSE 540

Query: 574 -------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
                   K+ AE  +  KS+FLA +SHE+RTPL AIIGFSE+I+   FGPLG+ RY EY
Sbjct: 541 LARKYSLEKERAEAANRAKSEFLANMSHELRTPLNAIIGFSEMIQAGTFGPLGSDRYEEY 600

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
            N I  SGN +L+++ND+LD+SKIE+G  +L  E + L   ++E + ++ L A EK I +
Sbjct: 601 INDIHTSGNFLLNVINDILDMSKIEAGHFSLDREEIDLCPLINETVRIISLQAEEKNIAV 660

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
            T   + +  + AD R++KQ+ +N+LSNA+ FT  GG+I +    T    + + ++DTGV
Sbjct: 661 ETRIEDAM-ELYADRRAIKQVLINLLSNAVKFTSYGGRITVRARKT-GAALFMTIQDTGV 718

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+    L K  +PF Q+ N       G+GLGL +++++ + + G   I ST   GT++ +
Sbjct: 719 GIPKSALRKIGQPFEQVENQFTKTHTGSGLGLAISRSLAELHGGWLRIRSTERVGTVVSV 778

Query: 807 IFP 809
             P
Sbjct: 779 CIP 781



 Score = 41.2 bits (95), Expect = 0.74,   Method: Composition-based stats.
 Identities = 30/254 (11%), Positives = 61/254 (24%), Gaps = 18/254 (7%)

Query: 86  TWNID-AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN--HIGDLLKRQNT 142
            W+ D A G +   S  + + +G  A   + +   DV+ I++ +  +   I +     + 
Sbjct: 285 LWDWDMARGRI-YWSRSMYEMLGYEAQDAV-LPFGDVAAIINEEDGDLYSIAEQAAAGDI 342

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
            +             +V + + A      +    G     I       +         D 
Sbjct: 343 SHVDRVFRMRHADGSWVWMRVRAEIASEGDLHLVG-----IAFDVSEQHRFAQQTAEADM 397

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
           +     E       +      +    S          V +L       +    T      
Sbjct: 398 RIREAIENISEAFVLWDANNRLVMANSKFSEY-AGLPVWTLKPGVPRNEVDAHTRP---F 453

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG---- 318
           T E     E          +      +  +     +    +S     +      E     
Sbjct: 454 TFERRMANEHNRAGGQTFERQLSDGRWLQVNERRTQDGGMVSIGTDITQLKLHQERLVDS 513

Query: 319 ENLTPETVDKCPIP 332
           E     TV    I 
Sbjct: 514 ERRLMATVHDLSIA 527


>gi|82703807|ref|YP_413373.1| multi-sensor hybrid histidine kinase [Nitrosospira multiformis ATCC
           25196]
 gi|82411872|gb|ABB75981.1| multi-sensor hybrid histidine kinase [Nitrosospira multiformis ATCC
           25196]
          Length = 1118

 Score =  338 bits (868), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 127/620 (20%), Positives = 227/620 (36%), Gaps = 28/620 (4%)

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
            L +    L    + + +    K++          +R  +K   L     H D +L    
Sbjct: 51  ELRQSSDDLTRTARAYVATGNPKFEQIYFDILA--IRNGDKERPLHYERGHWDLILGHLN 108

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
                    SL  Q         +  K          ++     L+ R + + +A     
Sbjct: 109 PESAPGRRISLRSQIRKLGFTATELAK-------LTKAENRSNQLTEREYKAFNAMKGLF 161

Query: 319 ENLTPE-TVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
           ++   E  V   P      S  +   Y      ++       ++      +T+  A   +
Sbjct: 162 QDSAGEFGVKGAPDAALASSLLHDESYHTAKAEIIRLLNEFHELLDKRTRNTMALAQNRA 221

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           +        +        A S R+  +    +N   +                      E
Sbjct: 222 NLYISGVFFMLAFLMAWFAFSYRV--VHRKVQNLAWLEDKARNIGEASNSPSFYIDSNDE 279

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
                      + E  +       + + +AI   +      N A +K+FGY  E++L KP
Sbjct: 280 IGSLSRAFIVAQAERDRY---FNQSLNFLAISGFDNRFKRVNTAWTKVFGYSEEELLSKP 336

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556
           F   +   + +     L +++       +   +    K+     +   I        +  
Sbjct: 337 FMDLVFSGSRADTAAELDKLVMG---SNVSFESQMRCKDGSFRWVLWNIAAAQDVREFYF 393

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
           +  DI+  K  + +L +A+K AE  +  KS+FLA +SHEIRTP+  ++G   ++ N    
Sbjct: 394 SGQDITARKNIERELQNARKAAEAANRAKSEFLANMSHEIRTPMNGVLGAVGLLLNTTLT 453

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
           P       E A     SG  +L I+ND+LD SKIE+GK+ +   P  L +AV E   +V 
Sbjct: 454 P----SQRELAGLARASGETLLCIINDILDFSKIEAGKLVISPVPFDLLQAVEEVAGMVA 509

Query: 677 LY-ANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTH-- 731
           +  A +  + +   +  N+PR +  DL  ++Q+ +N+ +NAI FT  G   I +      
Sbjct: 510 MQPARKANVNVIVRYLPNVPRYVFGDLGRIRQVLINLTNNAIKFTDKGHVLIDVEAEALS 569

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
                + + V D+G+G+   +L+     F Q   S   R  GTGLGL ++K +V    G 
Sbjct: 570 EDEVSLRISVEDSGLGIAPDKLQSIFDKFTQADASTTRRYGGTGLGLAISKQLVQLMGGT 629

Query: 792 FYIFSTPAKGTLIEIIFPLY 811
               S    G+      PL 
Sbjct: 630 IAAKSRVGAGSTFWFTLPLA 649



 Score = 46.2 bits (108), Expect = 0.023,   Method: Composition-based stats.
 Identities = 25/255 (9%), Positives = 57/255 (22%), Gaps = 25/255 (9%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151
               K ++    K  G    +++     D+             D L   +    ++ +  
Sbjct: 311 DNRFKRVNTAWTKVFGYSEEELLSKPFMDLVFSGSRADTAAELDKLVMGSNVSFESQMRC 370

Query: 152 IEGTNLYVPIDLAALPIYS-RNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
            +G+  +  +          R   FSG              +     +   K     +  
Sbjct: 371 KDGS--FRWVLWNIAAAQDVREFYFSG-------QDITARKNIERELQNARKAAEAANRA 421

Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL-TSEESSL 269
           K    +    +          P   +   V  L                     +    +
Sbjct: 422 KSEFLANMSHEIR-------TPMNGVLGAVGLLLNTTLTPSQRELAGLARASGETLLCII 474

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
            +  DF  I   +         L    +E    ++ +     +       N+    +   
Sbjct: 475 NDILDFSKIEAGKLVISPVPFDLLQAVEEVAGMVAMQPARKANV------NVIVRYLPNV 528

Query: 330 PIPFFVYSHGNLFYA 344
           P   F    G +   
Sbjct: 529 PRYVF-GDLGRIRQV 542


>gi|116749808|ref|YP_846495.1| multi-sensor hybrid histidine kinase [Syntrophobacter fumaroxidans
            MPOB]
 gi|116698872|gb|ABK18060.1| PAS/PAC sensor hybrid histidine kinase [Syntrophobacter fumaroxidans
            MPOB]
          Length = 1509

 Score =  338 bits (868), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 125/786 (15%), Positives = 242/786 (30%), Gaps = 85/786 (10%)

Query: 79   IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP---NNHIGD 135
                  F + +D  G     +  + +TIG    +M G  L  +  +L  D       I +
Sbjct: 611  DVLPGMF-FVLDTEGRFVRWNRVVRETIGTSDEQMDG--LDALIPVLAEDRHLIAGAIRN 667

Query: 136  LLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA 195
            + +R       TT   I G N       +   I      F    G               
Sbjct: 668  VFERGYA---DTTARIITGQNEVRHFYFSGKKIVIGKNTFLLATGL----DVTERQKAED 720

Query: 196  LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV--------------- 240
                 +++   + E     + V      + +       +   +K                
Sbjct: 721  ALISANQQLYDIIEFLPDATLVLDNGKRVIAWNRAIETMTGASKQDMIGKGDNACMVPLY 780

Query: 241  ----SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS 296
                  L +     DD L+++ + +  +      E                    L +  
Sbjct: 781  GGPRPHLPDLIDVGDDELESKYHYVKRAGNVVYAETFLPCVYGGKGAYVMAKAAPLFDAH 840

Query: 297  KESFEYLSHRNHPS----LSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLL 351
                  +      +          E      + +D  P   F +   G +   N +   +
Sbjct: 841  GNRVGVIESIRDITEYKQAEEALRESRRQLADIIDFLPNATFVIDREGRVIAWNRAIEEM 900

Query: 352  TKYKSVDDIEIA---------GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT 402
            T   + D +            G    +L    L                  +   A  HT
Sbjct: 901  TGVNAADMLGRGDYEYALPFYGKRRPILIDLVLHPLGQEGAAYSKIGKGGTV-FEAEEHT 959

Query: 403  IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
                   +  +        +     +       +  + +  +  +     +  SI E   
Sbjct: 960  PTLRGRGAY-LIGTASVLRDSKGNIVGAIESLRDITERKRMEEALARAEEKYRSIFENAL 1018

Query: 463  DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522
            +GI     EG  LS N +++++ GY   +   +  T    Q             L+L+  
Sbjct: 1019 EGIFQTTPEGRFLSVNPSLARILGYGSPEETIRSVTDLSRQVYVDPERRLELLQLTLERG 1078

Query: 523  QTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS----LTMHDISEWKQEKNKLSHAKKIA 578
               +       K+  L  ++I ++ +            T  DI++ K  +++L  A+KI 
Sbjct: 1079 IVQDFEIQVQRKDRSLAWIKISLRGVRDRGGRLIYMEGTAQDITDRKVLESRLLQAQKI- 1137

Query: 579  EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
                         ++H+    L AIIG++E+ +      + +P    Y + + ++ +   
Sbjct: 1138 ----EAIGTLAGGIAHDFNNILAAIIGYTEMTRQT----VEHPDPRRYLDQVLKACDRAR 1189

Query: 639  DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
            ++V  +L  S+    K      PV +   V EA+  ++   +   I IR   A     +L
Sbjct: 1190 NLVGQILAFSR----KAERDIRPVDVRSIVKEALKFLRATLSS-TIKIRQKIAPGTHAVL 1244

Query: 699  ADLRSVKQIALNILSNAIHFT-PSGGQIIISTTHTS--------------NEEVILRVRD 743
            AD   + Q+ +N+ +NA H     GG + +   +                   + L + D
Sbjct: 1245 ADPTQIHQVLINLCTNAAHAMREKGGVLQVDLENIDVRPGSTAFPADLPSGPYLKLTISD 1304

Query: 744  TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
            TG G+ +  L +   PF          GEGTGLGL +   +V    G   + S P  G++
Sbjct: 1305 TGTGIDHAILHRIFDPFFTTK----RPGEGTGLGLSVVYGIVKECGGTVTVSSEPGAGSV 1360

Query: 804  IEIIFP 809
              +  P
Sbjct: 1361 FSVWLP 1366



 Score =  151 bits (382), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 66/549 (12%), Positives = 143/549 (26%), Gaps = 66/549 (12%)

Query: 86   TWNIDAHGYLKEISEELPKTIGNYAFKMIG--MRLCDV-------SDILHIDPN-----N 131
            T+ I     +   +  L K  G  +  MIG                  L +D +      
Sbjct: 474  TFVIGKDHRVLYWNAALEKFSGIGSEDMIGTNRHWSAFYDGERPCMADLLLDEDLKEFSK 533

Query: 132  HIGDLLKRQNTWYG---KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNR 188
              G   ++ +   G    T   P  GT     + + A P+        G      V    
Sbjct: 534  RYGHAARKSDLVAGAFEATPFLPNLGTGGK-WLHVTAGPVRDSRGAIVGA--VQSVQDIT 590

Query: 189  VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA 248
                     ++  +    L ++  G   V   +             R+  +    ++   
Sbjct: 591  ERKLAELALQQEKEFSDTLIDVLPGMFFVLDTEGRFVRWN------RVVRETIGTSDEQM 644

Query: 249  HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG-----------TLQNNSK 297
               D L             ++    +    +                       +  N+ 
Sbjct: 645  DGLDALIPVLAEDRHLIAGAIRNVFERGYADTTARIITGQNEVRHFYFSGKKIVIGKNTF 704

Query: 298  ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKS 356
                 L                    + ++  P    V  +G  +   N +   +T    
Sbjct: 705  LLATGLDVTERQKAEDALISANQQLYDIIEFLPDATLVLDNGKRVIAWNRAIETMTGASK 764

Query: 357  VDDIEI----------AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
             D I             G    L D   + D+         +     + A   L  +   
Sbjct: 765  QDMIGKGDNACMVPLYGGPRPHLPDLIDVGDDELESKYHYVKRAGNVVYAETFLPCVY-- 822

Query: 407  RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
                  +        +     +       +  + +  +  +     QL  I++   +   
Sbjct: 823  GGKGAYVMAKAAPLFDAHGNRVGVIESIRDITEYKQAEEALRESRRQLADIIDFLPNATF 882

Query: 467  IINREGIILSTNRAVSKLFGYPVEDILRK---PFTVFLEQNTPSVMNHYLTEILSLDLR- 522
            +I+REG +++ NRA+ ++ G    D+L +    + +        ++   +   L  +   
Sbjct: 883  VIDREGRVIAWNRAIEEMTGVNAADMLGRGDYEYALPFYGKRRPILIDLVLHPLGQEGAA 942

Query: 523  --------QTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNK 570
                       E      T   +   L      L  S    +    ++ DI+E K+ +  
Sbjct: 943  YSKIGKGGTVFEAEEHTPTLRGRGAYLIGTASVLRDSKGNIVGAIESLRDITERKRMEEA 1002

Query: 571  LSHAKKIAE 579
            L+ A++   
Sbjct: 1003 LARAEEKYR 1011



 Score =  118 bits (297), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 45/424 (10%), Positives = 116/424 (27%), Gaps = 25/424 (5%)

Query: 179 RGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH---------SSVEKEKYDIFSQQS 229
           R F IV   +         +  + K+  L E  +               +    +   + 
Sbjct: 309 RAFLIVEEEKKRKVAEQALRVSEVKYRTLFESARAAICIIQDWKFVDANESARALLGIRE 368

Query: 230 PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYF 289
                     +S            L  E+   + +  +    +  F   +  +       
Sbjct: 369 GMDFDSAMENLSPCGLPGGGDSRQLLRERIRAVLASGAPEAFELRFLRGDGTRLDMYASV 428

Query: 290 GTLQ--NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANP 346
             L+    +           +       ++ E +    +   P P F +     + Y N 
Sbjct: 429 DRLELGAQTLVQAIIRDITAYKQAIEATEKSERMLHRIIQASPNPTFVIGKDHRVLYWNA 488

Query: 347 SFLLLTKYKSVDDIE-----------IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIA 395
           +    +   S D I                ++ LL    L + +        +SD    A
Sbjct: 489 ALEKFSGIGSEDMIGTNRHWSAFYDGERPCMADLLLDEDLKEFSKRYGHAARKSDLVAGA 548

Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
             A    +         +        +     +       +  + ++ +  ++ E     
Sbjct: 549 FEATPF-LPNLGTGGKWLHVTAGPVRDSRGAIVGAVQSVQDITERKLAELALQQEKEFSD 607

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           ++++       +++ EG  +  NR V +  G   E +      + +      ++   +  
Sbjct: 608 TLIDVLPGMFFVLDTEGRFVRWNRVVRETIGTSDEQMDGLDALIPVLAEDRHLIAGAIRN 667

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575
           +       T  +I  G   E +          +  ++    T  D++E ++ ++ L  A 
Sbjct: 668 VFERGYADTTARIITGQN-EVRHFYFSGKKIVIGKNTFLLATGLDVTERQKAEDALISAN 726

Query: 576 KIAE 579
           +   
Sbjct: 727 QQLY 730



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 16/165 (9%), Positives = 53/165 (32%), Gaps = 11/165 (6%)

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
                I  E+   ++ ++ + +  ++  ++ E+    I II ++   +  N +   L G 
Sbjct: 308 TRAFLIVEEEKKRKVAEQALRVSEVKYRTLFESARAAICII-QDWKFVDANESARALLGI 366

Query: 488 PVEDILRKPFTVFLE------QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
                                 ++  ++   +  +L+    +           +   L +
Sbjct: 367 REGMDFDSAMENLSPCGLPGGGDSRQLLRERIRAVLASGAPEAF--ELRFLRGDGTRLDM 424

Query: 542 RIIIKKLPFSSCYS--LTMHDISEWKQEKNKLSHAKKIAEKESSH 584
              + +L   +       + DI+ +KQ       ++++  +    
Sbjct: 425 YASVDRLELGAQTLVQAIIRDITAYKQAIEATEKSERMLHRIIQA 469


>gi|94263963|ref|ZP_01287765.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93455635|gb|EAT05817.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 914

 Score =  338 bits (868), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 108/536 (20%), Positives = 208/536 (38%), Gaps = 40/536 (7%)

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIP-FFVY-SHGNLFYANPSFLLLTKYKSVDDIE 361
                       +  E       D  P     +  S G     N +      Y + +   
Sbjct: 2   GKSAEIVAREALERSEEKFRMLFDLFPDATVLIDLSTGLPVQFNRTAHTQLGYSAEE--- 58

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL-HTIQWNRENSLAMTFIPFEK 420
                       ++ D  A +      +    I  S R     Q   +    +       
Sbjct: 59  --------FAQLQIPDYEAQETPEETAAHIQTIMESGRDDFETQHRTKGGAILDIRVTVM 110

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
             +         +  +  + +  +R ++    +L    ++   G+   + E  IL  +  
Sbjct: 111 KLEIGAKPHFLCVFRDISEQKQLQRTLQESRDRLEVAADSAQIGVWDYDVERDILVWDEW 170

Query: 481 VSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
           + +++    +D     + ++  L     S +    ++ L     Q    +         +
Sbjct: 171 MYRIYNISADDFTGAYEAWSQALHPEDFSWVTALFSQALLDPKVQ-FNPVFRIIWPNGTI 229

Query: 539 LSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAE-------KESSHKSD 587
            +++   K    SS        +  DI+E  Q + +L  ++             S+ KS 
Sbjct: 230 RTIKATSKVALNSSGKAIRVVGSNRDITEQHQAQEELKKSEAQLTIAKEQAEAASAAKSA 289

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           FLA +SHEIRTP+ AI+GFS +       P       +Y   ID+S + +L I+ND+LD 
Sbjct: 290 FLANMSHEIRTPMNAIVGFSRLALQDELPPKP----RDYLEKIDQSAHSLLKIINDILDF 345

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQ 706
           SKIE+GK+ +   P  L E +     ++ +   EK + +  +    +P  ++ D   + Q
Sbjct: 346 SKIEAGKLTMEEVPFDLSEVLDNVGQMMAMRTEEKGLELLFALGPEVPPNLIGDPLRLSQ 405

Query: 707 IALNILSNAIHFTPSGGQIIISTTH----TSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
           + +N+ +NA+ FT  G +I++  +         E+   ++D+G+GM   ++ +  +PF Q
Sbjct: 406 VLINLTNNAVKFTEQG-EIVLQVSCPEPTADPVELQFAIKDSGIGMNEEQIARIFQPFTQ 464

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI--IFPLYDTSHP 816
             +S      GTGLGL + + +V++  G+  + STP KG+      IFP    + P
Sbjct: 465 ADDSTTRSYGGTGLGLSIVRRLVESMGGEVEVSSTPGKGSTFSFNAIFPRDSQASP 520


>gi|91790296|ref|YP_551248.1| multi-sensor hybrid histidine kinase [Polaromonas sp. JS666]
 gi|91699521|gb|ABE46350.1| multi-sensor hybrid histidine kinase [Polaromonas sp. JS666]
          Length = 839

 Score =  338 bits (868), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 106/628 (16%), Positives = 222/628 (35%), Gaps = 37/628 (5%)

Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254
                L    +   E+ +   +  ++        +      +  ++    +  A +    
Sbjct: 105 QDMLALKNLIARRVELMEQTIAARQQAG--LEAAAALVGSDLNRQLHQEIDGLAQRIKSA 162

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
           +T        E     +  ++  ++    +       +Q                 + A 
Sbjct: 163 ETLTLGRSKEEARQSAQTVEWLILSGGVLSLAVLAWAIQ------MIGRFQAQRRLVEAR 216

Query: 315 FDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
             + E ++    +            G +  AN +   L  Y   D I     ++TLL A 
Sbjct: 217 LSDSEAMSRAITESMAEGVMTATPQGVIVGANSAARTLFGYTLDDLIGRQ--VATLLPAR 274

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
             SD  A    +  R      + +  +  ++ +                          I
Sbjct: 275 YQSDFTAFYEALASRPRGFRESGT-EVSGVRRDGTEF---PVHVSFGDVHVGGQRLFTAI 330

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
             +  ++R   + +     QL  + +     IA ++++  +   N+A  + FG   E I 
Sbjct: 331 IRDITESRRISQALRDSEAQLRQLTDTVPALIAYVDKDQRLQFHNKAYEEAFGLTHEQIH 390

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS- 552
           +K     + +   + +  ++ E L+       E+  +      +   +    +     + 
Sbjct: 391 QKTLLEVMGEEFYAGVKDHVAEALA-GYSVRYEREQVSVGGGRREYVMNYFPRYGEGKAW 449

Query: 553 ----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                +    +D++E K+                  KS+F++ VSHE+RTPLT+I G   
Sbjct: 450 DQAIGFFALGNDVTELKRI--------------DRMKSEFVSTVSHELRTPLTSIRGSLG 495

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
           ++     G L   +          +   ++ ++ND+LD  KIESGKM    +PV LD  +
Sbjct: 496 LVWGGVTGELP-EKAKALVGIAKNNCERLIRLINDILDSEKIESGKMRFEMQPVELDPLL 554

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
            + ++  + +A + ++ +          +  D   + Q+  N+LSNAI F+P+ G + + 
Sbjct: 555 EQVLAANEGFAAQHQVKLVLRTGRRPVLVNVDSDRLTQVVTNLLSNAIKFSPAEGTVQV- 613

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
              +    V + + D G G+     +   + F Q   S   +  GTGLGL ++KAM++  
Sbjct: 614 LLRSGAGRVRVEISDKGPGIPEEFRQHIFQKFSQADASDTRQRGGTGLGLSISKAMLERM 673

Query: 789 MGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
            G     +    GT      P +  + P
Sbjct: 674 EGSIGFTTEQNVGTTFFFELPEWKEAPP 701



 Score = 44.2 bits (103), Expect = 0.089,   Method: Composition-based stats.
 Identities = 20/208 (9%), Positives = 54/208 (25%), Gaps = 18/208 (8%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ----NTWYGK 146
             G +   +       G     +IG ++  +    +        + L  +         +
Sbjct: 240 PQGVIVGANSAARTLFGYTLDDLIGRQVATLLPARYQSDFTAFYEALASRPRGFRESGTE 299

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF-GIVHVNRVDNDPRALGKRLDKKFS 205
            +    +GT   V +          +    G R F  I+             +  + +  
Sbjct: 300 VSGVRRDGTEFPVHVSFG-------DVHVGGQRLFTAIIRDITESRRISQALRDSEAQLR 352

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
            L +      +   +   +        H +   +   LT    H+  +L+          
Sbjct: 353 QLTDTVPALIAYVDKDQRLQ------FHNKAYEEAFGLTHEQIHQKTLLEVMGEEFYAGV 406

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQ 293
           +  + E    +++   +       G  +
Sbjct: 407 KDHVAEALAGYSVRYEREQVSVGGGRRE 434


>gi|242280724|ref|YP_002992853.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens DSM
           2638]
 gi|242123618|gb|ACS81314.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens DSM
           2638]
          Length = 1083

 Score =  338 bits (868), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 122/632 (19%), Positives = 234/632 (37%), Gaps = 35/632 (5%)

Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255
           L  R  +  +        +    KE       Q   P     +  +       ++  ++ 
Sbjct: 96  LMARHARDMTGELLGSDRYRLNVKEFAVAIDSQLAEPMRLALSGKTGTLTGEDYRGVLVV 155

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTK-KQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
               P+           +      +    +       L         +   R    + + 
Sbjct: 156 AAYTPVNIGGNRFGFVAKVDLREMVRPIWQTSLGIVILAGVLIGWGAWRFLRLVNPVISK 215

Query: 315 FDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
            ++        +   P     +   G +   N     L  Y   + +     +  L+   
Sbjct: 216 LEDEIRANEAMIATSPSGIIVIEDDGQVVQFNTVASQLFGYSKDEVVGQNVKI--LMPPN 273

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
             S +N+     L   +R  I     +   + +                +F + +   GI
Sbjct: 274 IASRHNSFIKRHLDTGERRVIGVGREVEGQRKDGS---LFPLHLAIGKMEFQQRVRFIGI 330

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE-DI 492
             +    +  +  +  +       +E +  G+ I++ +G I   N A  ++ GY    ++
Sbjct: 331 LTDISALKTAEEGLRQKHR----AVEESPVGVIIMDLDGRIEYLNPASLRIHGYHAAVEL 386

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
             K F VF     P+     +   L     ++ +       ++  L+ +R     +    
Sbjct: 387 EGKYFNVFESSEIPTDAYSNMWAQLKAG--ESWKGELQNKRQDGSLVWVRQHFCPIRMED 444

Query: 553 C----YSLTMHDISEWKQEK-----------NKLSHAKKIAEKESSHKSDFLARVSHEIR 597
                Y     D++E+++ +            +L  AK  AE+ +  K+ F A +SHEIR
Sbjct: 445 GSIKHYLSIQEDVTEFREHRSILEQTVRERTAELEKAKDAAEEGARVKAAFTANMSHEIR 504

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TP+ AI+GF+EV+         + +   +   I  S   +L I+ND+LD+SK+ESGK  L
Sbjct: 505 TPINAILGFAEVVMQD---SDLSSQTAGHVGTILSSAKSLLGIINDILDVSKMESGKFAL 561

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAI 716
                 L  A+++A+  ++  A+EK + +   +  N+  R + D   ++Q+ LN+  NA+
Sbjct: 562 EIVCFHLPNALADALRTLEHRADEKSLKLALDYDVNLSTRFMGDPTRLRQVVLNLAGNAV 621

Query: 717 HFTPSGGQIIISTTHTSNEEV-ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
            FT  G  I I        E+    V DTG+GMT  ++ K    F Q   S   R  GTG
Sbjct: 622 KFTEHGS-ITIGVEVGDAPEILHFFVSDTGIGMTEKQVAKVFDSFSQADESTTRRFGGTG 680

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           LG  ++K +V+   G+ ++ S   KG++    
Sbjct: 681 LGTTISKQIVEMMDGEIWVESQLGKGSVFHFT 712



 Score = 54.6 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/154 (10%), Positives = 45/154 (29%), Gaps = 13/154 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAF-KMIGMRLCDVSDILHI-DPNNHIGDLLKRQNTWYGK 146
           +D  G ++ ++    +  G +A  ++ G             D  +++   LK   +W G+
Sbjct: 361 MDLDGRIEYLNPASLRIHGYHAAVELEGKYFNVFESSEIPTDAYSNMWAQLKAGESWKGE 420

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                 +G+   V +     PI   +     +             +     +        
Sbjct: 421 LQNKRQDGSL--VWVRQHFCPIRMEDGSIKHYL---------SIQEDVTEFREHRSILEQ 469

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV 240
               +       K+  +  ++        M +++
Sbjct: 470 TVRERTAELEKAKDAAEEGARVKAAFTANMSHEI 503



 Score = 38.1 bits (87), Expect = 7.1,   Method: Composition-based stats.
 Identities = 36/366 (9%), Positives = 100/366 (27%), Gaps = 22/366 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           I+  G + + +    +  G    +++G  +  +        +N       +++   G+  
Sbjct: 237 IEDDGQVVQFNTVASQLFGYSKDEVVGQNVKILMPPNIASRHNSFI----KRHLDTGERR 292

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFS---GFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +  +         D +  P++    +       R  GI+             +    +  
Sbjct: 293 VIGVGREVEGQRKDGSLFPLHLAIGKMEFQQRVRFIGILTDISALKTAEEGLR----QKH 348

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV------LKTEKY 259
              E       +      I         +   +    L   Y +  +         +  +
Sbjct: 349 RAVEESPVGVIIMDLDGRIEYLNPASLRIHGYHAAVELEGKYFNVFESSEIPTDAYSNMW 408

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
             L + ES   E ++    + +    +Q+F  ++        YLS +   +         
Sbjct: 409 AQLKAGESWKGELQNKRQ-DGSLVWVRQHFCPIRMEDGSIKHYLSIQEDVTEFREHRSIL 467

Query: 320 NLT--PETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
             T    T +             +  A  + +       ++ I   G    ++    LS 
Sbjct: 468 EQTVRERTAELEKAKDAAEEGARVKAAFTANMSHEIRTPINAI--LGFAEVVMQDSDLSS 525

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
             A     +  S ++ +     +  +        A+  + F   N   + +       ++
Sbjct: 526 QTAGHVGTILSSAKSLLGIINDILDVSKMESGKFALEIVCFHLPNALADALRTLEHRADE 585

Query: 438 VDTRIN 443
              ++ 
Sbjct: 586 KSLKLA 591


>gi|162455108|ref|YP_001617475.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
 gi|161165690|emb|CAN96995.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
          Length = 714

 Score =  338 bits (868), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 92/403 (22%), Positives = 168/403 (41%), Gaps = 13/403 (3%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
             +            +E E+ D R  +  +      L +I++ ++  I + + EG  L  
Sbjct: 155 RVRERTAELASSNAALEAENADRRRAELALRESQHLLQAIIDNSTAVIFVKDLEGRYLMI 214

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
           NR   +LF    + I  K             +  +    ++      +E+          
Sbjct: 215 NRRYEELFHVTAQWIAGKTDYDLFPAECADALRAFDRRAVAAGGPLEIEESVPQGDGLHT 274

Query: 538 LLSLRIIIKKLPFSS-CYSLTMHDISEWKQEKNKLSH--AKKIAEKES-----SHKSDFL 589
            ++++  +      +        DIS+ K+ + +      ++ A +         K +FL
Sbjct: 275 YIAIKCPLFDESGRAYAVCGISTDISDRKRTEAEREMLLCREQAARAELERTGRLKDEFL 334

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
           A +SHE+RTPLTAI+G+S+++   R     +         I+R+      +V+DLLD+S+
Sbjct: 335 ALLSHELRTPLTAILGWSQLL---RLRGPSDEILGRALGTIERNARAQSKLVDDLLDMSR 391

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709
           I  G+++L  E V L E +   +   +  A  K I +  S  +   +++ D   ++QI  
Sbjct: 392 IIGGRLSLDVEVVDLTEMLETLLESAEPAAKAKGIRLELSVESAGEQVMGDPNRLQQIVW 451

Query: 710 NILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
           N++SNA+ FT  GGQ+ +S          L V DTG+G+    L    + F Q   S   
Sbjct: 452 NLVSNAMKFTRQGGQVKVSLR-REGTYARLAVSDTGIGIAPEFLPYVFEQFRQADASTTR 510

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFPLY 811
              G GLGL + + +V+ + G     S    +G    +  PL 
Sbjct: 511 EYGGLGLGLSIVQHLVELHGGTVEASSAGKDQGASFTVKLPLS 553



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 30/333 (9%), Positives = 78/333 (23%), Gaps = 17/333 (5%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI-GDLLKRQNTWYGKTT 148
           D  G    I+    +     A  + G    D+      D         +        + +
Sbjct: 206 DLEGRYLMINRRYEELFHVTAQWIAGKTDYDLFPAECADALRAFDRRAVAAGGPLEIEES 265

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           +   +G  L+  I +   P++  +     +   GI           A  + L  +     
Sbjct: 266 V--PQGDGLHTYIAIKC-PLFDESGR--AYAVCGISTDISDRKRTEAEREMLLCREQAAR 320

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMK--NKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
              +    ++ E   + S +   P   +   +++  L                    ++ 
Sbjct: 321 AELERTGRLKDEFLALLSHELRTPLTAILGWSQLLRLRGPSDEILGRALGTIERNARAQS 380

Query: 267 SSLPEQEDFHTINLNQYTKKQY---FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
             + +  D   I   + +          +     ES E  +      L    +       
Sbjct: 381 KLVDDLLDMSRIIGGRLSLDVEVVDLTEMLETLLESAEPAAKAKGIRLELSVESAGEQVM 440

Query: 324 ETVDKCPIPFFVYSHGNLFYANP------SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
              ++     +      + +         S      Y  +   +   G++          
Sbjct: 441 GDPNRLQQIVWNLVSNAMKFTRQGGQVKVSLRREGTYARLAVSDTGIGIAPEFLPYVFEQ 500

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
                           +  S   H ++ +    
Sbjct: 501 FRQADASTTREYGGLGLGLSIVQHLVELHGGTV 533


>gi|114567640|ref|YP_754794.1| bacteriophytochrome-like protein [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
 gi|114338575|gb|ABI69423.1| PAS/PAC sensor signal transduction histidine kinase [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
          Length = 727

 Score =  338 bits (868), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 111/734 (15%), Positives = 243/734 (33%), Gaps = 54/734 (7%)

Query: 93  GY-LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151
           G      + +L   +G    +   M   D+      +    +G   +R         L  
Sbjct: 26  GRKFSYANPKLQNDLGYSLEEFYSMDFWDIVHPDLREMTRQMGLARQRGEEVPDSYELRL 85

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGI-VHVNRVDNDPRALGKRLDKKFSHLHEI 210
           +        + + A           G R   +            A   R  +    L E 
Sbjct: 86  LGKQGNCFWVHIKAKNT-----SVEGERTVIVSAFDISERKAIEADLLRQKESLLLLLEN 140

Query: 211 KKGHSSVEKEKYDIFSQQSPP-------PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
               + +   +                       ++V          +       +    
Sbjct: 141 NPVATVLVDPEGKTLYVNPRFIEYTGYGLEEVSTSQVWEENVLAEMPNRREIMRSWYQNL 200

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
            E      +      +  +     +   L +       +    +         E ++   
Sbjct: 201 KEIGYSKGKVVLRRRDGERRFFNIHSVALPDGHIVLAAWD-INDQVEAQKILQESQDRFK 259

Query: 324 ETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIE------IAGGLSTLLDAPKLSD 377
              +       +  +G    AN +   L  Y   + I        A     ++ +  +S 
Sbjct: 260 ALSEASFEGIIITENGICIEANQAAEELFGYSREELIGLDVMSFTAPEAREIVKSQMMSA 319

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
           + A    ++ R D T +    +  +  +      A                       + 
Sbjct: 320 SQAPYEAIVLRQDGTRVPVEIQGRSFIYQGREVRA-------------------AAIRDL 360

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
            + R  + ++  +   L ++   T D + + +    IL  N    + FGY +E+      
Sbjct: 361 SERRRAEEEIYRQSTNLQALFYNTPDAVVLCDSLHRILDANPRFFEFFGYSIEECRGFIL 420

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT 557
              L        + +++ ++S      + + ++   K  +LL + + +  +  SS Y + 
Sbjct: 421 EEVLVPEEMREESAFMSRMVSDGQA--ISRESMRKKKNGELLPVLVTMIPI-ASSGYYVL 477

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
             DISE K+ +  +    K  E +++    F   VSH++R+PL  I GFS ++       
Sbjct: 478 YTDISERKEAEATIQQQIKELEAKNAEMERFTYTVSHDLRSPLITIKGFSGLLLQD-LEK 536

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
               R  +    I  +   + +++ DLL++S+I  G++   +    +++   E + L+  
Sbjct: 537 GKTARLQKDIQRIINASGKMEELLEDLLELSRI--GRILNPYSNFPMNQLCFEVVELLSG 594

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-TSNEE 736
             ++K+  +    A  +P +  D R + ++  N+L NAI F     +  I   +     E
Sbjct: 595 PISQKKAEVVV--APYMPWVQGDRRRIAEVVQNLLENAIKFMGDNERPRIEIGYFPGEGE 652

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
            +  ++D G+G+     EK    F ++  S     EGTG+GL L K +++ + G+ ++ S
Sbjct: 653 CVFFIKDNGIGIEAKYREKVFGLFDKLDQST----EGTGIGLALVKRIIELHQGRIWVES 708

Query: 797 T-PAKGTLIEIIFP 809
               +G+      P
Sbjct: 709 AGAGQGSTFYFTLP 722



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 39/376 (10%), Positives = 103/376 (27%), Gaps = 31/376 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL----LKRQNTWY 144
           +D  G    ++    +  G    ++   ++ + + +  +     I       LK      
Sbjct: 148 VDPEGKTLYVNPRFIEYTGYGLEEVSTSQVWEENVLAEMPNRREIMRSWYQNLKEIGYSK 207

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
           GK  L   +G   +  I   ALP    +                   + + + +    +F
Sbjct: 208 GKVVLRRRDGERRFFNIHSVALP----DGHI-----VLAAWDINDQVEAQKILQESQDRF 258

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK-NKVSSLTEYYAHKDDVLKTEKYPLLT 263
             L E       + +    I + Q+          ++  L        +  +  K  +++
Sbjct: 259 KALSEASFEGIIITENGICIEANQAAEELFGYSREELIGLDVMSFTAPEAREIVKSQMMS 318

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTL--QNNSKESFEYLSHRNHPSLSAYFDEGENL 321
           + ++  P +      +  +   +    +   Q     +                      
Sbjct: 319 ASQA--PYEAIVLRQDGTRVPVEIQGRSFIYQGREVRAAAIRDLSERRRAEEEIYRQSTN 376

Query: 322 TPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
                   P    +      +  ANP F     Y   +       L  +L   ++ + +A
Sbjct: 377 LQALFYNTPDAVVLCDSLHRILDANPRFFEFFGYSIEEC--RGFILEEVLVPEEMREESA 434

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
              +    SD   I+   R    +      L +       A+          +  +  + 
Sbjct: 435 --FMSRMVSDGQAIS---RESMRKKKNGELLPVLVTMIPIASS-----GYYVLYTDISER 484

Query: 441 RINKRKMEIEVMQLCS 456
           +  +  ++ ++ +L +
Sbjct: 485 KEAEATIQQQIKELEA 500



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 35/121 (28%), Gaps = 6/121 (4%)

Query: 459 EATSDGIAIINREGI-ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
           E T   IA+I   G      N  +    GY +E+     F   +  +   +    +    
Sbjct: 15  ENTDIMIAVI--RGRKFSYANPKLQNDLGYSLEEFYSMDFWDIVHPDLREMTRQ-MGLAR 71

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIII--KKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575
                           K+     + I      +       ++  DISE K  +  L   K
Sbjct: 72  QRGEEVPDSYELRLLGKQGNCFWVHIKAKNTSVEGERTVIVSAFDISERKAIEADLLRQK 131

Query: 576 K 576
           +
Sbjct: 132 E 132


>gi|182414886|ref|YP_001819952.1| PAS/PAC sensor hybrid histidine kinase [Opitutus terrae PB90-1]
 gi|177842100|gb|ACB76352.1| PAS/PAC sensor hybrid histidine kinase [Opitutus terrae PB90-1]
          Length = 689

 Score =  338 bits (868), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 107/566 (18%), Positives = 212/566 (37%), Gaps = 23/566 (4%)

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
           +           +     +  + +        Q+    +   L+                
Sbjct: 1   MHRDAADRPTGDQSGDRHDAGERSSPAQSDQPQDREGVTPGELASALREREE-------- 52

Query: 321 LTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
              +  D  P   +  +  G + Y N  +          +             P   D+ 
Sbjct: 53  GFRQLADAMPQLVWTANPDGRVDYYNARWREYAGISPATEGSEPSWDWAPTLHP---DDE 109

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
           A       R+  T        H ++               + +     +   G   +  D
Sbjct: 110 AATIHAWRRAIGTGRPYQIE-HRVRMADGRVRWHLSRGIPRRDATGRIIKWYGTATDIHD 168

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI--LRKPF 497
            R+ + +  +   +   + +AT+D I   +     +  + A     GY  E I    + +
Sbjct: 169 FRVAQEEARLNEERYRLVAQATNDVIWDWDLRTNQIGWSEATLANLGYTAEQIGTSFENW 228

Query: 498 TVFLEQNTPSVMNHYLTEILS-LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY-- 554
              +     + ++  +   ++      + E           +   R  I +      Y  
Sbjct: 229 RERVHPADRARLDASIQAAIASGGDTWSDEYRFRRQDGSYGVFLDRGHIARDKSGRAYRM 288

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
             ++ D++E ++ + +L  AK  AE+ S  K +FLA +SHE+RTPLT ++  +++++ +R
Sbjct: 289 IGSLLDLTERRRVEAELRQAKDDAERASRAKDEFLAALSHELRTPLTPVLMMTQMLEQER 348

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
             P   P   +    I R+  L + +++DLLD+++I  GK+ ++ E V +   + +AI +
Sbjct: 349 SFP---PEVRDDLRTIRRNVELEMRLIDDLLDLTRITRGKLRMNEEIVDVHRVLQDAIKI 405

Query: 675 -VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
                 ++KR+ +R  F  N   +  D   + Q+  N++ NA+ FTP  G I + T + S
Sbjct: 406 GCDDMCSQKRLRVRCEFEANRSAMRGDTARLGQVFWNLIKNAVKFTPEDGAITLRTRNPS 465

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
            E + +RV DTG+G+    L +    F Q       R  G GLGL + +A+V+ + G   
Sbjct: 466 PERLEVRVADTGIGIEASVLPQIFNAFEQGGAHITRRFGGLGLGLAICRALVELHHGTIV 525

Query: 794 IFST-PAKGTLIEIIFPLYDTSHPHD 818
             S  P  G    +  P    +   D
Sbjct: 526 ARSEGPGHGAEFIVELPTCPDATAQD 551



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/380 (7%), Positives = 86/380 (22%), Gaps = 36/380 (9%)

Query: 22  TQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPR 81
           T D S  + D G  +  ++ + P      Q        E  S     +    F       
Sbjct: 10  TGDQSGDRHDAGERSSPAQSDQP------QDREGVTPGELASALRERE--EGFRQLADAM 61

Query: 82  TVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI----GDLL 137
             +  W  +  G +   +    +  G            D +  LH D            +
Sbjct: 62  P-QLVWTANPDGRVDYYNARWREYAGISPATEGSEPSWDWAPTLHPDDEAATIHAWRRAI 120

Query: 138 KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG 197
                +  +  +   +G           +P           + +G           +   
Sbjct: 121 GTGRPYQIEHRVRMADGR--VRWHLSRGIPRRDATGRII--KWYGTATDIHDFRVAQEEA 176

Query: 198 KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP-PHLRMKNKVSSL------TEYYAHK 250
           +  ++++  + +           + +          +L    +             +   
Sbjct: 177 RLNEERYRLVAQATNDVIWDWDLRTNQIGWSEATLANLGYTAEQIGTSFENWRERVHPAD 236

Query: 251 DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310
              L       + S   +  ++  F   + +           ++ S  ++  +      +
Sbjct: 237 RARLDASIQAAIASGGDTWSDEYRFRRQDGSYGVFLDRGHIARDKSGRAYRMIGSLLDLT 296

Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
                +                           A   FL    ++    +     ++ +L
Sbjct: 297 ERRRVEAELRQAK------------DDAERASRAKDEFLAALSHELRTPLTPVLMMTQML 344

Query: 371 DAPKLSDNNAIKPVMLYRSD 390
           +  +         +   R +
Sbjct: 345 EQERSFPPEVRDDLRTIRRN 364


>gi|94499610|ref|ZP_01306147.1| multi-sensor hybrid histidine kinase [Oceanobacter sp. RED65]
 gi|94428364|gb|EAT13337.1| multi-sensor hybrid histidine kinase [Oceanobacter sp. RED65]
          Length = 1120

 Score =  338 bits (867), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 116/594 (19%), Positives = 219/594 (36%), Gaps = 53/594 (8%)

Query: 242 SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301
            L   +      ++ +   +L     S P +     ++      +     L++ + +   
Sbjct: 413 DLDMPWRDDAIAIQKQDQEVLAGRFDSSPFEGKLIGVDG-VSWVQARKMPLKSINDKVLG 471

Query: 302 YLSHRNHPS-----------LSAYFDEGENLTPETVDKCPIPFF--VYSHGN--LFYANP 346
            L      +            ++  +E      + +D  P       Y      +   N 
Sbjct: 472 VLGVYQDITDYKSVIEQLNSQNSLINESNQKLSQLIDSSPDIIVYREYQEDRLIISVYNH 531

Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
            F       + +          +     LS       V++   D+    A + L      
Sbjct: 532 MFEKWVGDLTDE-------KDCVFSKEVLSVLEEKDSVVVRELDQVLYKAESSLS----- 579

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
               + +  +     +          I  +  +TR    +++       ++   T D   
Sbjct: 580 DGRRVLLDIVKVPVFSDLNIVKGILFIGRDVTETR----ELQ---SLYEALFSLTQDPFF 632

Query: 467 IINREGIILSTNRAVSKLFGYP-VEDILRKPFTVFLEQNTPSVMNH------YLTEILSL 519
           +I+  G I S N A +++ G     +++                         + E +  
Sbjct: 633 VIDEVGAISSCNDAGAQILGLENRTNLIGMRLIEHFTPEYQPDGERSESKVKRVNESVEK 692

Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKI 577
                ++        +   + +R+ I +L         +  HDI +    +  L  AK  
Sbjct: 693 ASDARVQFDFTHKDIDGNPIHVRVFIVRLNGGPKKRLLVQWHDIKDMYAREESLRQAKAD 752

Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
           AE+ +  KS FLA +SHEIRTPL A++G S ++         + +  +Y   I+++   +
Sbjct: 753 AEELADQKSMFLANMSHEIRTPLNALVGLSNLL----VANETHVKAQDYMRSINKASIHL 808

Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS--FANNIP 695
             IV+D+LD SKI++ +++L    V+ DE + E  SL +  A EK +         N+I 
Sbjct: 809 KSIVDDILDFSKIDADRIDLDEIAVNFDEFLCEIKSLHEQSAREKGLHFEVDNRLDNDI- 867

Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755
            I+ D    +QI  N++SNAI FT  G  I+++      E ++L V DTG G+   +L  
Sbjct: 868 AIVIDPVRYRQIINNLVSNAIKFTEKGEVIVVT--KKQQESLLLSVCDTGCGLDENQLSN 925

Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
              PF Q   +   +  GTGLGL + K + +   G   + S   KG+   +  P
Sbjct: 926 LFDPFSQADITTTRKYGGTGLGLSICKGLAERMSGSISVSSELGKGSCFYVSIP 979



 Score = 67.7 bits (164), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 21/154 (13%), Positives = 52/154 (33%), Gaps = 9/154 (5%)

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRKPFTVF 500
             ++++      L S+L+    G+   +     L  N+   +  G+   EDI+ K     
Sbjct: 357 RERQRLLEGSDLLRSVLDLIPVGVYWKDDRLRFLGCNKRFLRDSGFESFEDIVGKSDLDM 416

Query: 501 LEQNTPSVMNHYLTEILSLD-LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYS 555
             ++    +     E+L+        E   +G      +  ++     L   +       
Sbjct: 417 PWRDDAIAIQKQDQEVLAGRFDSSPFEGKLIGVDG---VSWVQARKMPLKSINDKVLGVL 473

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
               DI+++K    +L+    +  + +   S  +
Sbjct: 474 GVYQDITDYKSVIEQLNSQNSLINESNQKLSQLI 507


>gi|39996387|ref|NP_952338.1| sensory box sensor histidine kinase/response regulator [Geobacter
           sulfurreducens PCA]
 gi|39983267|gb|AAR34661.1| sensory box sensor histidine kinase/response regulator [Geobacter
           sulfurreducens PCA]
          Length = 772

 Score =  338 bits (867), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 100/496 (20%), Positives = 184/496 (37%), Gaps = 31/496 (6%)

Query: 322 TPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
                +      F+    G+    NP+      Y   + + +  G+           ++ 
Sbjct: 41  YRALFEHAIDGIFIMDAEGHYLDVNPAICSAIGYTRDEFLALDWGV------LSRGVDSG 94

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
                L R          R    +   + ++ ++                 GI  +  + 
Sbjct: 95  WAAASLARIVGGEPLREERTVWTRNGDQLTVELSAHLLPDGK-------ILGIARDVSER 147

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +  +  +      L +IL+     I I + +G +   N A  +  G P    + +     
Sbjct: 148 KRMEESLRSTSEFLDTILDEAPLPIYITSVDGTLRLANNAWERETGIPRNAAVGRRLNEL 207

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL----LSLRIIIKKLPFSSCYSL 556
                    +     ++  +     ++                 LR     +      S+
Sbjct: 208 FPAAMCDQFSEINRRVVESNATAVQDEFLDFGAGVRVFHTIKFPLRDAAGGVVDVGGISI 267

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
              DI++  + + +L  A   A   S  K DFLA +SHEIRTP+  +IG  E+++     
Sbjct: 268 ---DITDRSKMEGELRAAHAAAVDSSRAKIDFLANMSHEIRTPMNGVIGTLELLRETDL- 323

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
              +PR  EYA     S   +L ++N +LD SKIES ++ L   P ++ EAV  A+   +
Sbjct: 324 ---DPRQREYAEIARESAESMLAVINMVLDYSKIESHQLVLEAVPFAIREAVERAVKPFR 380

Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
             A  K +++      ++P  ++ D     QI  N++ NA+ FT  G  I +     + +
Sbjct: 381 AVAARKGVMVAADVPPHVPETVVGDPVRFSQIVANLVGNAVKFTEQGA-ITVQLGAAAVD 439

Query: 736 EVILRVR----DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
           +  + V     DTG G++  + +    PF Q   S      GTGLGL + + +V+A  G 
Sbjct: 440 DCRIDVSCSVGDTGAGISPEKFDTIFDPFVQADGSTTRIHGGTGLGLAIVRRLVEAMDGV 499

Query: 792 FYIFSTPAKGTLIEII 807
             + S P  G+     
Sbjct: 500 ISVASEPGMGSTFSFR 515



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/396 (9%), Positives = 95/396 (23%), Gaps = 25/396 (6%)

Query: 45  CHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPK 104
           C  S   + +T   +     T  L   + +        +   + +DA G+  +++  +  
Sbjct: 12  CAASVLGAPYTLLCRLLPRITADLRYGSGYR-ALFEHAIDGIFIMDAEGHYLDVNPAICS 70

Query: 105 TIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLA 164
            IG    + + +    +S  +           +        + T+W   G  L V +   
Sbjct: 71  AIGYTRDEFLALDWGVLSRGVDSGWAAASLARIVGGEPLREERTVWTRNGDQLTVELSAH 130

Query: 165 ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDI 224
            LP    + +  G     I              +   +    + +       +      +
Sbjct: 131 LLP----DGKILG-----IARDVSERKRMEESLRSTSEFLDTILDEAPLPIYITSVDGTL 181

Query: 225 -FSQQSPPPHLRMKNK--VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLN 281
             +  +      +     V              +  +      E ++   Q++F      
Sbjct: 182 RLANNAWERETGIPRNAAVGRRLNELFPAAMCDQFSEINRRVVESNATAVQDEFLDFGAG 241

Query: 282 QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNL 341
                     L++ +    +        +  +  +                         
Sbjct: 242 VRVFHTIKFPLRDAAGGVVDVGGISIDITDRSKMEGELRAAHA------AAVDSSRAKID 295

Query: 342 FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401
           F AN S  + T       +    G   LL    L         +   S  + +A    + 
Sbjct: 296 FLANMSHEIRTP------MNGVIGTLELLRETDLDPRQREYAEIARESAESMLAVINMVL 349

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
                  + L +  +PF         +         
Sbjct: 350 DYSKIESHQLVLEAVPFAIREAVERAVKPFRAVAAR 385


>gi|306842114|ref|ZP_07474784.1| PAS domain S-box-containing protein [Brucella sp. BO2]
 gi|306287787|gb|EFM59215.1| PAS domain S-box-containing protein [Brucella sp. BO2]
          Length = 783

 Score =  338 bits (867), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 123/543 (22%), Positives = 227/543 (41%), Gaps = 54/543 (9%)

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEI 362
                        + +      + +     + +       Y + S   +  Y++ D +  
Sbjct: 241 QAARAREADDLSGQIQRRIDMALARGRCGLWDWDMARGRIYWSRSMYEMLGYEAQDAVLP 300

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
            G ++ +++       +  +      +         R+  ++    + + M       + 
Sbjct: 301 FGDVAAIINEEDGDLYSIAEQA----AAGDISHVD-RVFRMRHADGSWVWMRVRAEIASE 355

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
                +   GI  +  +     ++     M++   +E  S+   + +    ++  N   S
Sbjct: 356 GD---LHLVGIAFDVSEQHRFAQQTAEADMRIREAIENISEAFVLWDANNRLVMANSKFS 412

Query: 483 KLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
           +  G PV  +    P         P      +    +    QT E+       + + L +
Sbjct: 413 EYAGLPVWTLKPGVPRNEVDAHTRPFTFERRMANEHNRAGGQTFERQL----SDGRWLQV 468

Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH---------------------------- 573
               ++            DI++ K  + +L                              
Sbjct: 469 N---ERRTQDGGMVSIGTDITQLKLHQERLVDSERRLMATVHDLSIARKGERDRVRELSE 525

Query: 574 -------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
                   K+ AE  +  KS+FLA +SHE+RTPL AIIGFSE+I+   FGPLG+ RY EY
Sbjct: 526 LARKYSLEKERAEAANRAKSEFLANMSHELRTPLNAIIGFSEMIQAGTFGPLGSDRYEEY 585

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
            N I  SGN +L+++ND+LD+SKIE+G  +L  E + L   ++E + ++ L A EK I +
Sbjct: 586 INDIHTSGNFLLNVINDILDMSKIEAGHFSLDREEIDLCPLINETVRIISLQAEEKNIAV 645

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
            T   + +  + AD R++KQ+ +N+LSNA+ FT  GG+I +    T    + + ++DTGV
Sbjct: 646 ETRIEDAM-ELYADRRAIKQVLINLLSNAVKFTSYGGRITVRARKT-GAALFMTIQDTGV 703

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+    L K  +PF Q+ N       G+GLGL +++++ + + G   I ST   GT++ +
Sbjct: 704 GIPKSALRKIGQPFEQVENQFTKTHTGSGLGLAISRSLAELHGGWLRIRSTERVGTVVSV 763

Query: 807 IFP 809
             P
Sbjct: 764 CIP 766



 Score = 41.2 bits (95), Expect = 0.77,   Method: Composition-based stats.
 Identities = 30/254 (11%), Positives = 61/254 (24%), Gaps = 18/254 (7%)

Query: 86  TWNID-AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN--HIGDLLKRQNT 142
            W+ D A G +   S  + + +G  A   + +   DV+ I++ +  +   I +     + 
Sbjct: 270 LWDWDMARGRI-YWSRSMYEMLGYEAQDAV-LPFGDVAAIINEEDGDLYSIAEQAAAGDI 327

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
            +             +V + + A      +    G     I       +         D 
Sbjct: 328 SHVDRVFRMRHADGSWVWMRVRAEIASEGDLHLVG-----IAFDVSEQHRFAQQTAEADM 382

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
           +     E       +      +    S          V +L       +    T      
Sbjct: 383 RIREAIENISEAFVLWDANNRLVMANSKFSEY-AGLPVWTLKPGVPRNEVDAHTRP---F 438

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG---- 318
           T E     E          +      +  +     +    +S     +      E     
Sbjct: 439 TFERRMANEHNRAGGQTFERQLSDGRWLQVNERRTQDGGMVSIGTDITQLKLHQERLVDS 498

Query: 319 ENLTPETVDKCPIP 332
           E     TV    I 
Sbjct: 499 ERRLMATVHDLSIA 512


>gi|307316590|ref|ZP_07596033.1| integral membrane sensor hybrid histidine kinase [Sinorhizobium
           meliloti AK83]
 gi|306897788|gb|EFN28531.1| integral membrane sensor hybrid histidine kinase [Sinorhizobium
           meliloti AK83]
          Length = 917

 Score =  338 bits (867), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 119/638 (18%), Positives = 225/638 (35%), Gaps = 27/638 (4%)

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244
            +  +    R          S +        ++ +    +   +                
Sbjct: 23  RITDLPISARVAALTAAGLISLVLSSLFLTQALYRSAERMAETRELFDRAASAASAHVAF 82

Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY-TKKQYFGTLQNNSKESFEYL 303
               +    L      L+ S+ ++   +E              +    ++       E  
Sbjct: 83  GDLRYWLTDLSVSL--LMNSQRNADEARERLQEQLAGLAKHAPEAVEAIRTEVDAYVETA 140

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIA 363
                         G  L  +                L     +     + + V   E  
Sbjct: 141 LQAADSYTQDNRIVGNALLAKARTHS--GKVDADLNRLVEQVKAEAEAARNEVVVQTEKT 198

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
              + +L    +   + +  ++L            RL+ +  +         IP E  ++
Sbjct: 199 ATTAAILVGGVVLIGSLLTLLVLRSIVGPLR----RLNRVIGDLTEGRYDVDIPEEGGDE 254

Query: 424 FPENMPQNGIEPEDV-DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
                    +  E   + +  + + E +   + + LE  SDG  + + E  IL  N    
Sbjct: 255 LGAMARTLSLFRESAIEKKKLEDEAERQRRTIAAALEVISDGFVLYDSEDRILVANSKYC 314

Query: 483 KLF-GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE----- 536
           ++F  +    +  + F   +EQN                     E++ L           
Sbjct: 315 EIFPSHKPNTLRGRSFREIVEQNLEMGQVDLEG---KSPQEWVDERVRLHRDPAGLVDEK 371

Query: 537 --KLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
                 +RI  +K+P          DI+E KQ + +L  AK  AE  +  KS FLA +SH
Sbjct: 372 RFGDKWVRISKRKIPD-GGTVAVYTDITELKQRQVELERAKSHAESANEAKSRFLASMSH 430

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           E+RTPL AIIG+SE++  +      +   +   + I  +G  +L ++ND+LD+SKIE+ K
Sbjct: 431 ELRTPLNAIIGYSEMLIEEARDHE-DEELVPDLDKIASAGRHLLSLINDILDLSKIEANK 489

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714
           M +  E  S+ + + +  + V          +   F  ++  + +D   ++Q   N+LSN
Sbjct: 490 MEVFLETFSVADLLRDVAATVAPLMARNGNELTQDFETDLGEMHSDQTKLRQNLFNLLSN 549

Query: 715 AIHFTPSGGQIIISTTHT---SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           A  FT +GG++ +          + ++ +V DTG+GM+  + E+    F Q   S     
Sbjct: 550 AAKFT-NGGRVTLRVRREQRADRDWLVFQVTDTGIGMSPEQQERLFNAFTQADASTTRNY 608

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            GTGLGL + ++      G   + S   KG++  I  P
Sbjct: 609 GGTGLGLSITRSFCRMIGGVVTVESEVGKGSVFTIEVP 646



 Score = 41.9 bits (97), Expect = 0.42,   Method: Composition-based stats.
 Identities = 18/235 (7%), Positives = 52/235 (22%), Gaps = 3/235 (1%)

Query: 90  DAHGYLKEISEELPKTI-GNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           D+   +   + +  +    +    + G    ++ +         +    K    W  +  
Sbjct: 301 DSEDRILVANSKYCEIFPSHKPNTLRGRSFREIVEQNLEMGQVDLEG--KSPQEWVDERV 358

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +   L          +    R+        +          +   +R        +
Sbjct: 359 RLHRDPAGLVDEKRFGDKWVRISKRKIPDGGTVAVYTDITELKQRQVELERAKSHAESAN 418

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           E K    +    +              +  +     +     D          L S  + 
Sbjct: 419 EAKSRFLASMSHELRTPLNAIIGYSEMLIEEARDHEDEELVPDLDKIASAGRHLLSLIND 478

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
           + +        +  + +      L  +   +   L  RN   L+  F+       
Sbjct: 479 ILDLSKIEANKMEVFLETFSVADLLRDVAATVAPLMARNGNELTQDFETDLGEMH 533


>gi|254416315|ref|ZP_05030069.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196176997|gb|EDX72007.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 1474

 Score =  338 bits (867), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 127/827 (15%), Positives = 279/827 (33%), Gaps = 115/827 (13%)

Query: 87   WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK 146
            WN D  G++ + +       G    + +G     +           I   L     WY K
Sbjct: 436  WNTD--GHIVDWNPAAESIFGYCRDEALGHPSTLIVPPAAQAQIKQIKAKL-----WYDK 488

Query: 147  TTLWP------IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
                        +G    +  +    P+        G     +        + +   +  
Sbjct: 489  QVARSCNQNITKDGRT--IICEWYNTPLIDSQGNLLGIASMAL--DITQRQETQTALRES 544

Query: 201  DKKFSHLHEIKKGHSSVEKEKYDIFSQQS-------PPPHLRMKNKVSSLTEYYAHKDDV 253
            +++F+   +           K + +            P      +    +   +     +
Sbjct: 545  EERFALAIQANDSGLFDINFKTNTYYYSPQFLHLIGYPEDRDTPSFDELMARVHPEDQSM 604

Query: 254  LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS----HRNHP 309
            +K     L  SE S    +      N +          L++ + +    +       +  
Sbjct: 605  VKISIDQLFISELSQWKLEFRMVHSNGSTPWFLSRGLVLRDENGKVTRIVGTHTDISDRK 664

Query: 310  SLSAYFDEGENLTPETVDKCPIPFFVYSHG--NLFYANPSFLLLTKYKSVDDIEIA-GGL 366
               A   E E    +  +     FF+ +     +FY +P++  +         +     L
Sbjct: 665  QAEAALLEREEQFRQLAENIREVFFLTTPDLSRMFYLSPAYEEVWGRSRESLYDQPMTWL 724

Query: 367  STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
              +    +     A+      +  +           ++ +      +    F   +   +
Sbjct: 725  DNIHPYDRDRVAEALG-----KQLQGEQDFEQEYRILRPDGSE-RWVWVRTFRVFDDKGK 778

Query: 427  NMPQNGIEPEDVDTRINKRKMEIE----------------VMQLCSILEAT--------- 461
                 GI  +  + + ++ ++  +                 +QL +IL+ T         
Sbjct: 779  MTRIAGIAEDITERKHSEAELRRQTLQRQLFAEITLKIRQSLQLDAILQTTVTEVRRILQ 838

Query: 462  --SDGIAIINREGIILSTNRA---------VSKLF------GYPVEDILRK--PFTVFLE 502
                 I  +N +G  +    A           +++      GY  +    +        +
Sbjct: 839  VDRVVIYQLNDDGTGVIMTEAVVPGWTPIQGQEIYDPCFREGYLEQYRQGRIRAIEDLYQ 898

Query: 503  QNTPSVMNHYLT--EILSLDLRQTLEKITLGST---------KEEKLLSLRIIIKKLPFS 551
             +        L    + +  +   L++  L            ++ ++  + ++ +     
Sbjct: 899  ADLEPCHIELLQPFGVRANLVVPILQRENLWGLLIAHQCSGPRQWEMFEIELLSQLADQV 958

Query: 552  SCYSLTMHDISEWKQEKNKL-------SHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
                     + E  +   +L         A++ AE  +  KS+FLA +SHE+RTPL  I+
Sbjct: 959  GIALAQSQLLEEQTRISQQLAEKNLHLEQARQEAETANHAKSEFLANMSHELRTPLNGIL 1018

Query: 605  GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
            G+ +V+K +   P    +  +  + I + G  +L ++ND+LD+SKIE+ KM+L       
Sbjct: 1019 GYVQVLKRE---PHPTAKQQQGLSIIQQCGEHLLTLLNDILDLSKIEARKMDLCLSEFQF 1075

Query: 665  DEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG 723
               +   I +V++ A+EK I       + +P+ +  D + ++Q+ +N+L NAI FT  G 
Sbjct: 1076 PHFLEGIIEMVRIRADEKAIAFHYQPLSPLPKIVRGDEKRLRQVLINLLGNAIKFTDQGS 1135

Query: 724  QIIISTTH--------TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
             I     +         ++  +  ++ DTG+G+   +L     PF QI   +  + EGTG
Sbjct: 1136 -ITFKVGYTSAQAPATEASNTMRFQIEDTGIGIAAEQLNDIFLPFHQI-GDRNRQVEGTG 1193

Query: 776  LGLPLAKAMVDANMGKFYIFSTPAKGTLIEI--IFPLYDTSHPHDCI 820
            LGL +++ +V    G+ ++ S   +G+   +    P        D +
Sbjct: 1194 LGLAISQRLVQLLGGELHVESNVGQGSTFYVDLELPAVSPDQAIDVV 1240



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/275 (14%), Positives = 93/275 (33%), Gaps = 22/275 (8%)

Query: 396 ASARLHTIQWNRENSLAMTFIPFE-KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
           A+A       + ++   +  +  + +            +  E V+ +  ++ +     +L
Sbjct: 363 ATAYQELCDRDTQSRHIVAHLDQQFQERTAALKAANRQLLAEVVEQKQMEKALRKNDQRL 422

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
             +++ T   +   N +G I+  N A   +FGY  ++ L  P T+ +     + +     
Sbjct: 423 SLLVQQTPLAVIEWNTDGHIVDWNPAAESIFGYCRDEALGHPSTLIVPPAAQAQIKQIKA 482

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNK 570
           ++             +  TK+ + +        L  S       +    DI++ ++ +  
Sbjct: 483 KLWYDKQVARSCNQNI--TKDGRTIICEWYNTPLIDSQGNLLGIASMALDITQRQETQTA 540

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRT----P--LTAIIGFSEVIKNQRFGPLGNPRYI 624
           L  +++            L  ++ +  T    P  L  I G+ E            P + 
Sbjct: 541 LRESEERFALAIQANDSGLFDINFKTNTYYYSPQFLHLI-GYPE--------DRDTPSFD 591

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           E    +      ++ I  D L IS++   K+    
Sbjct: 592 ELMARVHPEDQSMVKISIDQLFISELSQWKLEFRM 626


>gi|83646938|ref|YP_435373.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83634981|gb|ABC30948.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 874

 Score =  338 bits (867), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 101/532 (18%), Positives = 191/532 (35%), Gaps = 27/532 (5%)

Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPS 347
           F + +            +          + E      V       + ++      Y  P 
Sbjct: 352 FLSFRREQALELAKRMTQTIRDNETRLRQSEERYQLAVRGSNDGIWDWNLETGHMYYAPR 411

Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
           F  L  Y+            T  +      +       +     +          +  + 
Sbjct: 412 FQALLGYEE----GSFSNTFTEFEQKIHPQDKNPVLQAIKAHLESESPYDITHRLLTRSG 467

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
           E             N+    +   G   +    ++ + + E       +IL   +DGI  
Sbjct: 468 E-WRWFRSRGAAIRNKENVAIRMAGSISDIHQQKLAEAEAEEHAQHTQAILNNINDGIIT 526

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT--- 524
           ++  G I S NRA  ++F Y  + ++           + +  +  +++ LS  LR     
Sbjct: 527 VDEIGFIASFNRAAERIFHYNADSVIGYNLKRLFANYSDNDASESMSDYLSASLRSDASG 586

Query: 525 LEKITLGSTKEEKLLSLRIIIKKL--PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES 582
            E+   G  +  +   + I + ++       + + + DI+E K+                
Sbjct: 587 EEQEIEGVRQNGERFPVGISVSEVHRRAERLFIVVVRDITERKRV--------------D 632

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
             K++F++ VSHE+RTPLT+I G   ++ N   G      +  +     ++   +  ++N
Sbjct: 633 RMKNEFISTVSHELRTPLTSITGALSLLLNGAVGQ-PTEEFSRFLQIAYKNSQRLALLIN 691

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702
           DLLD+ KI +G +   F    +   V ++I   ++Y  +  +  +     +   I  D  
Sbjct: 692 DLLDMEKITAGGVKYSFSVEPVMPLVEQSIDTNRVYGQQHEVEYKIIHREDASLINVDPL 751

Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
             +QI  N LSNA  F+P G  + IS     N  V + V D G G+      +  K F Q
Sbjct: 752 RFQQILANFLSNAAKFSPQGCTVDISVQRREN-YVRISVTDRGPGIPPEFYTRIFKKFSQ 810

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
             +S + +  GTGLGL +++ +     G+    S   KG    +  PL   S
Sbjct: 811 ADSSDRRQKGGTGLGLFISRELAKGMRGRIDFESEVGKGATFYVELPLASGS 862


>gi|145219951|ref|YP_001130660.1| multi-sensor signal transduction histidine kinase [Prosthecochloris
           vibrioformis DSM 265]
 gi|145206115|gb|ABP37158.1| multi-sensor signal transduction histidine kinase [Chlorobium
           phaeovibrioides DSM 265]
          Length = 597

 Score =  338 bits (867), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 87/374 (23%), Positives = 171/374 (45%), Gaps = 26/374 (6%)

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
                   ++     + I + +  G I+  N + S+LF         +   +     +  
Sbjct: 244 RRSEEWYRAVFSGIREAILVTDAAGDIILVNPSASRLFRLEGAMFQSRSTALV----SDE 299

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR-IIIKKLPFSSCYSLTMHDISEWKQ 566
            +   L  +         E++T+ + K +++L +  + + +          ++DI+  + 
Sbjct: 300 GLRTLLQRVHGSKKAIVKEEMTVTTLKGKRILQISSMPVMREGVFDGTVFVLNDITRLRN 359

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE- 625
            +                + DF++ VSHE+RTPLT+I G++E + +   G + +  + E 
Sbjct: 360 LE--------------RIRRDFVSSVSHELRTPLTSIRGYTETLLD---GAMHDAEHTEA 402

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           +   I +    +  +VND+LD+SKIESG++   F PVSL E V  ++S +     +K + 
Sbjct: 403 FLRIIHQESEQLTALVNDVLDLSKIESGRIEYSFAPVSLMEVVERSMSTLAPQFAKKDVR 462

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS-GGQIIISTTHTSNEEVILRVRDT 744
           +  S   ++P +  D   ++ +  N+L NA+ +     G+I +S        V L V D 
Sbjct: 463 LDLSIPADLPLVRGDASYLEIVVRNLLDNAVKYVDEHNGRIRLSAAKRD-GFVTLEVEDN 521

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G+   +L++  + F ++  ++  +  GTGLGL + K +V A+ G   + S   +GT  
Sbjct: 522 GIGIAQKDLDRIFERFYRVDKARSRQLGGTGLGLSIVKHIVLAHKGDIKVRSRLNRGTAF 581

Query: 805 EIIFPLYDTSHPHD 818
            +  P+ D  HP D
Sbjct: 582 TLTLPVADQ-HPLD 594


>gi|260903049|ref|ZP_05911444.1| PAS domain protein [Vibrio parahaemolyticus AQ4037]
 gi|308108353|gb|EFO45893.1| PAS domain protein [Vibrio parahaemolyticus AQ4037]
          Length = 873

 Score =  338 bits (867), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 99/376 (26%), Positives = 171/376 (45%), Gaps = 12/376 (3%)

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
           +  ++ QL  + E   D I I + +G I   N A  +L  Y +E+++ K     L+    
Sbjct: 234 LSAKISQLAEVAEHARDTIIITHPDGTIAWVNSAFEQLTEYSLEEVVGKSPGELLQGEDT 293

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDIS 562
                 L    S+     +    L  TK ++   + + +  +   +     +     DI+
Sbjct: 294 DANTVALLS-QSVRSHSPVRVEILNYTKSQRPYWVELELSPVFDENGELLRFIAVERDIT 352

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           + ++ + +LS A   ++K +  KS+FLA +SHEIRTP+ AI+G SE++            
Sbjct: 353 DRREMEKRLSSALDKSKKATQAKSEFLANMSHEIRTPMNAIMGISEILLENENRREP--- 409

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             E    + +S N ++ I+ND+LD SK+E+GK+ L  E   L   V    +L    A++K
Sbjct: 410 -RELLLLLHKSANNLVTIINDILDYSKVEAGKLTLVEEEFDLRSLVESCTALCAYQADKK 468

Query: 683 RILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
            + +       +  ++  D   + QI LN++ NA+ FT  G  +++    +        V
Sbjct: 469 NLKLLVDIPLAMNTVVVGDKGRINQILLNLIGNAVKFTDEG-HVLLKVRESELGF-DFSV 526

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            DTG+G+    L   M  F Q+  S   R EGTGLGL ++K ++    G+  + S    G
Sbjct: 527 TDTGIGIPEDRLTHIMDKFEQVDTSATRRHEGTGLGLAISKRLISMYNGELCVHSDFGNG 586

Query: 802 TLIEIIFPLYDTSHPH 817
           +       L   S PH
Sbjct: 587 SCFSFSLQLPKRSQPH 602



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 12/140 (8%), Positives = 38/140 (27%), Gaps = 6/140 (4%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTWYGKTT 148
             G +  ++    +       +++G    ++      D N    +   ++  +    +  
Sbjct: 257 PDGTIAWVNSAFEQLTEYSLEEVVGKSPGELLQGEDTDANTVALLSQSVRSHSPVRVEIL 316

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
            +       +V ++L+  P++  N E    R   +        +          K     
Sbjct: 317 NYTKSQRPYWVELELS--PVFDENGEL--LRFIAVERDITDRREMEKRLSSALDKSKKAT 372

Query: 209 EIKKGHSSVEKEKYDIFSQQ 228
           + K    +    +       
Sbjct: 373 QAKSEFLANMSHEIRTPMNA 392



 Score = 50.8 bits (120), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 19/134 (14%), Positives = 48/134 (35%), Gaps = 7/134 (5%)

Query: 321 LTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
              E  +       + +  G + + N +F  LT+Y   + +  + G   LL      D +
Sbjct: 240 QLAEVAEHARDTIIITHPDGTIAWVNSAFEQLTEYSLEEVVGKSPG--ELLQG---EDTD 294

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
           A    +L +S R+       +     ++     +        ++  E +    +E +  D
Sbjct: 295 ANTVALLSQSVRSHSPVRVEILNYTKSQRPY-WVELELSPVFDENGELLRFIAVERDITD 353

Query: 440 TRINKRKMEIEVMQ 453
            R  ++++   + +
Sbjct: 354 RREMEKRLSSALDK 367


>gi|182678998|ref|YP_001833144.1| multi-sensor signal transduction histidine kinase [Beijerinckia
           indica subsp. indica ATCC 9039]
 gi|182634881|gb|ACB95655.1| multi-sensor signal transduction histidine kinase [Beijerinckia
           indica subsp. indica ATCC 9039]
          Length = 797

 Score =  338 bits (867), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 120/659 (18%), Positives = 250/659 (37%), Gaps = 58/659 (8%)

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
                 +         ++    D      P      K  V  +T   A +          
Sbjct: 121 ADPSGRIIGAYPAIPGLKGTLADYLGPAQPLTTFAEKAGVLRITLADATEALATVRTLGL 180

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKK--QYFGTLQNNSKESFEYLSHRNHPSLSAYF-DE 317
               + + +    +  +       +     F T       +  Y         +    + 
Sbjct: 181 ASAGQVALIHPMTEVLSEWRANSWRAGLLLFSTSFVLVALACAYFWQATRAKEAGETCER 240

Query: 318 GENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
                   +++     + +       + + S   +      +     G ++ L+      
Sbjct: 241 MRERIDTALNRGRCGLWDWDLARGRVFWSQSMYEILGMSPSEQFISFGDINALMHPQDGD 300

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
                + +   ++D     A      ++    + + +        +         GI  +
Sbjct: 301 LAAIAEMLAASKTD-----AIDHAFRMRNVAGDWVWLRARAELVRDHLSNTPHLVGICVD 355

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RK 495
             + ++   +     M+L   +E  S+   + + +  ++  N    +      + ++   
Sbjct: 356 ITEHKVLAERTATADMRLRDAIETVSEAFVLWDADNRLVMCNEKFQRFHNLANDILVPGT 415

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555
           P+   + + TP ++    ++I   +  Q   +       + + L +    ++      Y 
Sbjct: 416 PYMQVMAKGTPPLIQ---SQIALGERPQAGARTYEARLGDGRWLQIN---ERRTKDGGYV 469

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEK----------------------------------- 580
               DI+  K+ + +L  +++                                       
Sbjct: 470 SVGTDITTLKRHEEQLMESERRLMATIADLRKSRQTLELQAQQLADLAEKYLEQKAEAET 529

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            +  KS+FL  +SHE+RTPL AIIGFSE++  + +GPLG+PRY++Y N I +SG  +L +
Sbjct: 530 ANRAKSEFLTNMSHELRTPLNAIIGFSELMGQEPYGPLGSPRYLDYCNDIRQSGQYLLGV 589

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILAD 700
           ++D+LD+S++E+G++ L      +D  VS+AI+ V+  A EK I +          + AD
Sbjct: 590 ISDVLDMSRLEAGRVRLEKTDFEIDTVVSKAIAGVKATAEEKEITLLAETTPQT-SVHAD 648

Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760
             ++++I L +L NAI FTP+ G++ + T       + + V DTG+G+    L +  +PF
Sbjct: 649 RGAIEKILLILLRNAIKFTPAQGRVTVRTRMI-QGALNIYVEDTGMGIPPAPLARLGRPF 707

Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819
            Q+  S     +G+GLGL +A+++VD + G   I ST   GT++ +  P      P+D 
Sbjct: 708 EQLHGSMANGMKGSGLGLAIARSLVDLHGGSMRIRSTVGSGTIVLVRIP-----EPNDI 761



 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/248 (9%), Positives = 52/248 (20%), Gaps = 9/248 (3%)

Query: 86  TWNID-AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN--HIGDLLKRQNT 142
            W+ D A G     S+ + + +G    +       D++ ++H    +   I ++L    T
Sbjct: 256 LWDWDLARGR-VFWSQSMYEILGMSPSEQFI-SFGDINALMHPQDGDLAAIAEMLAASKT 313

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
                          +V +   A  +           G  +                 D 
Sbjct: 314 DAIDHAFRMRNVAGDWVWLRARAELVRDHLSNTPHLVGICV--DITEHKVLAERTATADM 371

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPP--PHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
           +     E       +      +          H    + +   T Y              
Sbjct: 372 RLRDAIETVSEAFVLWDADNRLVMCNEKFQRFHNLANDILVPGTPYMQVMAKGTPPLIQS 431

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
            +   E        +     +    +      ++    S                +    
Sbjct: 432 QIALGERPQAGARTYEARLGDGRWLQINERRTKDGGYVSVGTDITTLKRHEEQLMESERR 491

Query: 321 LTPETVDK 328
           L     D 
Sbjct: 492 LMATIADL 499


>gi|239908130|ref|YP_002954871.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239797996|dbj|BAH76985.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 1233

 Score =  338 bits (867), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 98/713 (13%), Positives = 233/713 (32%), Gaps = 81/713 (11%)

Query: 168 IYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSV-------EKE 220
           +   +    G   +  V          A   RL  +     ++    ++         + 
Sbjct: 262 VADPDGFLIGLLTWTDVAAVLSGIVSDAETARLRDQADRYRDLYDNAATGLFRLDHQGRP 321

Query: 221 KYDIFSQQSPPPHLRMKN--KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTI 278
                +      +  + +  + S    +    D   + E  P   S+   +  +      
Sbjct: 322 VAVNAALSRMLGYRDVADCLRQSRQPAHPLRLDGPSRRELMPRALSQADPVTFEARGPRR 381

Query: 279 NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF--DEGENLTPETVDKCPIPFFVY 336
                        +++   +   +         +A       +      ++        +
Sbjct: 382 EGGYRRLACSVRAVRDAYDQPTGFEGACADVPQAAVPGGPSDDAGYRSLIEHQTELICRF 441

Query: 337 S-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIA 395
              G L + N ++           +            P L  ++A        S      
Sbjct: 442 DPAGRLIFVNAAYARYWGKTPEVCLAENF-------QPALHPDDAAMVARRVASLCPHRP 494

Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
            +     +      +    +      +   E +    +  +    ++ ++ ++    +L 
Sbjct: 495 TTGYEVRVLRPDGRARYQRWTRRAIFDAAGELVEYQAVGRDITPRKLAEQSLKRRAEELH 554

Query: 456 ---------------------------------------SILEATSDGIAIINREGIILS 476
                                                  ++L    DG+ +++ E  +L+
Sbjct: 555 VLAEEKNAEAAALADRLGAALADGRRLADALREKTFFLDAVLAGVQDGVCLLSPEMEVLA 614

Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
            NR++  ++     +I+ +         +    +      ++         +       +
Sbjct: 615 VNRSLRGMYA-SRGEIVGQRCHEVYHGLSAPCQDCPSLRAMATRKLAIS--VVPKDDPGD 671

Query: 537 KLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
               + +    +  ++         + D++  K+ + +L+ A + AE  S  K  FLA +
Sbjct: 672 SAGWVELFCYPMLDAAGSVAAVVEIVRDVTAGKKLEAELAAALERAEAASQAKGAFLANM 731

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHEIRTPL A++G+ +++   R  P       +    ++ S   +L I+ND+LD SKIE+
Sbjct: 732 SHEIRTPLNAVLGYVQLMLRDRLEPA----QRQRLAVVEESAATLLSIINDILDYSKIEA 787

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNI 711
           G++ +  E   L + ++  +   ++ A EK + +       +P  +  D   ++QI  N+
Sbjct: 788 GRLEIKAESFDLAQCLAAVVKEQEVLAREKGLTLDLQLDPGLPGSVRGDGLRLRQILRNL 847

Query: 712 LSNAIHFTPSGGQIIISTTHTSNE----------EVILRVRDTGVGMTNYELEKAMKPFG 761
           ++NA+ +T  G  + +  +                +   V DTGVG+   +L      F 
Sbjct: 848 VNNAVKYTEHGS-VTLRASLLDRSPCPTGSGERVTLRFAVIDTGVGIPADQLPAIFDSFT 906

Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           Q+      R  GTGLGL + + +     G+ ++ S   KG++  +  P    +
Sbjct: 907 QVDGGLTKRQAGTGLGLAICRRLAGLMSGEVFVDSVAGKGSVFWLECPFEAAA 959



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 29/274 (10%), Positives = 69/274 (25%), Gaps = 13/274 (4%)

Query: 61  SVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCD 120
           S + T  L  +     D         + +D  G    ++  L + +G         +   
Sbjct: 287 SDAETARLRDQADRYRDLYDNAATGLFRLDHQGRPVAVNAALSRMLGYRDVADCLRQSRQ 346

Query: 121 VSDILHIDPNNHIG---DLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSG 177
            +  L +D  +        L + +    +      EG    +    +   +     + +G
Sbjct: 347 PAHPLRLDGPSRRELMPRALSQADPVTFEARGPRREGGYRRLAC--SVRAVRDAYDQPTG 404

Query: 178 FRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP---PPHL 234
           F G        V       G   D  +  L E +            +    +        
Sbjct: 405 FEGAC----ADVPQAAVPGGPSDDAGYRSLIEHQTELICRFDPAGRLIFVNAAYARYWGK 460

Query: 235 RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE-DFHTINLNQYTKKQYFGTLQ 293
             +  ++   +   H DD     +              E      +     ++     + 
Sbjct: 461 TPEVCLAENFQPALHPDDAAMVARRVASLCPHRPTTGYEVRVLRPDGRARYQRWTRRAIF 520

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
           + + E  EY +     +     ++      E + 
Sbjct: 521 DAAGELVEYQAVGRDITPRKLAEQSLKRRAEELH 554



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/404 (7%), Positives = 84/404 (20%), Gaps = 25/404 (6%)

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
           W   G    +   L   P+           G             R L      +   L  
Sbjct: 18  WRRAGDGAVMA-KLHETPLRDLPPAAPITLGL----WTTAAQAARTLLGAGAGEALVLDG 72

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
            +            + +             V          D +    ++ L        
Sbjct: 73  GRPLGVVTTSGLSKVLTHNIVQAAHLAVRDVMDPVAVSPESDYLPGALRHLLAAPSRRLA 132

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
                   + +         G   +   E     +       +   +    +        
Sbjct: 133 VVDAAGRAVGMLAPFHVARLGVALDELAERTVASAMTRTVVTARAGEALPMVLARMTRLG 192

Query: 330 PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389
                V                T   +V  +     +  +     +S   A     L  +
Sbjct: 193 VGGVVVARDDVPCGV------FTARDAVRLLAGGADIRDMAVDAAMSAPVATVAPQLPLA 246

Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449
           +               +   +  +     +                  + +     ++  
Sbjct: 247 EGLAG----------MDGAGAGRLVVADPDGFLIGLLTWTDVAAVLSGIVSDAETARLRD 296

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--NTPS 507
           +  +   + +  + G+  ++ +G  ++ N A+S++ GY       +              
Sbjct: 297 QADRYRDLYDNAATGLFRLDHQGRPVAVNAALSRMLGYRDVADCLRQSRQPAHPLRLDGP 356

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
                +   LS     T      G  +E     L   ++ +  +
Sbjct: 357 SRRELMPRALSQADPVTF--EARGPRREGGYRRLACSVRAVRDA 398


>gi|209524002|ref|ZP_03272554.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
 gi|209495674|gb|EDZ95977.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
          Length = 966

 Score =  338 bits (867), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 96/526 (18%), Positives = 204/526 (38%), Gaps = 36/526 (6%)

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
               SA   +    +   + +      V S  G +   N +   ++ Y+  + I+    +
Sbjct: 34  RKPASAEIIDTIKRSQSFLQQMGCIVIVLSLEGKIVEWNHAAEEISGYRREEVIDRNYWM 93

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
             L   P+   +      +   + +  +      H +  +      + F      N   E
Sbjct: 94  LCL---PESVRDGVKFRYLQAIATQQQVHVH---HILLGSDGRQQQVNFQIVPWRNYCGE 147

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
            +           +     + E+E  +L  ++      IA+ + E   L+ +    +   
Sbjct: 148 ILGAIVTGEPVACSPDGSCEQELECERLQQLISYLPLPIAMFDTEMRYLAYSEGWIQHLK 207

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
             +  ++                  +   +    +    +       ++  L+     + 
Sbjct: 208 PQIYSLIGLNHYDVFPNVKNDWKLAHKKALRGEKVSALEDSWIR---EDGSLIYHGWTVG 264

Query: 547 K----LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
                        L +  +       N L   +  A      KS FLA++SHEIRTP++ 
Sbjct: 265 PWYRNSGEVGGVILVIIPL-------NNLVETRNAALDAVQFKSRFLAQMSHEIRTPMSG 317

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           ++G  E++      P    +  +Y   I RS   +L ++N++LD+SK+E+G+ +L     
Sbjct: 318 VLGMVELLMQTHLTP----QQKDYTQTIYRSAKHLLTVINEILDLSKLEAGETHLESHDF 373

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPS 721
            L + +   + L+ + A +K++ +      N+PR +  D   ++Q+ +N+++NAI FT S
Sbjct: 374 DLQDCLETVVDLLAVKAEDKQLELIILLEPNLPRYLKGDGMRLQQVLINLVNNAIKFTKS 433

Query: 722 GGQIIISTTHT----SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
           G  III  T       +  +   + DTG+G+++    +  +PF    ++   +  GTGLG
Sbjct: 434 G-HIIIRVTPRVISQDHINIYFAIEDTGMGISDELQPQLFQPFSPASSATNRQYGGTGLG 492

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEI---IFP--LYDTSHPHD 818
           L + + +V+   G+  + S   +G++        P  L +TS P +
Sbjct: 493 LSICQHLVNLMGGEIGVKSQEEEGSIFWFNATFLPSELSETSAPKE 538



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 14/140 (10%), Positives = 45/140 (32%), Gaps = 1/140 (0%)

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476
           P          +            +    ++   + +  S L+     + +++ EG I+ 
Sbjct: 11  PLVLTLGISAMISMVASLTLVRWRKPASAEIIDTIKRSQSFLQQMGCIVIVLSLEGKIVE 70

Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
            N A  ++ GY  E+++ + + +     +      +   + ++  +Q +    +    + 
Sbjct: 71  WNHAAEEISGYRREEVIDRNYWMLCLPESVRDGVKF-RYLQAIATQQQVHVHHILLGSDG 129

Query: 537 KLLSLRIIIKKLPFSSCYSL 556
           +   +   I          L
Sbjct: 130 RQQQVNFQIVPWRNYCGEIL 149



 Score = 46.9 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 16/121 (13%), Positives = 34/121 (28%), Gaps = 6/121 (4%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG--DLLKRQNTWYGKTTL 149
            G + E +    +  G    ++I      +     +           +  Q   +    L
Sbjct: 65  EGKIVEWNHAAEEISGYRREEVIDRNYWMLCLPESVRDGVKFRYLQAIATQQQVHVHHIL 124

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFR--GFGIVHVNRVDNDPRALGKRLDKKFSHL 207
              +G    V   +  +P  +   E  G    G  +        +     +RL +  S+L
Sbjct: 125 LGSDGRQQQVNFQI--VPWRNYCGEILGAIVTGEPVACSPDGSCEQELECERLQQLISYL 182

Query: 208 H 208
            
Sbjct: 183 P 183


>gi|149187193|ref|ZP_01865491.1| RscS; sensor kinase protein [Vibrio shilonii AK1]
 gi|148838729|gb|EDL55668.1| RscS; sensor kinase protein [Vibrio shilonii AK1]
          Length = 934

 Score =  338 bits (867), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 115/419 (27%), Positives = 189/419 (45%), Gaps = 17/419 (4%)

Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM--EIEVMQLCSIL 458
             +Q + +  L +              +       + V+ ++NK  +  E E  QL  ++
Sbjct: 225 FWLQRSSDTKLQIALSSVTLFLCLGAYLYWRQWLQQHVEAKLNKELLDNEKERSQLAMVV 284

Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
           E  SD I I NR+G+    N A  KL GY + + + K     L+    S           
Sbjct: 285 EHASDAIVITNRDGLTTWVNSAFEKLSGYQLTETIGKKPGDLLQGIDTSK-EEIKRISDE 343

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHA 574
           L    T++   L   K+ +   + I+I  +         +     D S+ KQ +  L  A
Sbjct: 344 LSQGHTVQSELLNYHKDGRPYWIDIVITPIRNIHNQIEQFIAVERDSSDRKQLEQNLQQA 403

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
            ++A+  +  KS FLA +SHE+RTPL  I+G +++++      +   ++ E  + +  SG
Sbjct: 404 VQVADASNRAKSTFLATMSHELRTPLNGILGMAQILE----SSVTQAQHKEQLSVLLESG 459

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NN 693
           N +L ++ND+LDISKIE GK+ L     ++DE  S  IS      NEK I  + +    +
Sbjct: 460 NHLLSLLNDILDISKIEEGKLELEDIDFAIDELCSPIISTYSAICNEKGIQFKLNNQLPS 519

Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIII-----STTHTSNEEVILRVRDTGVGM 748
                 D   ++Q+  N+L NA+ FT  G   ++     S+   S E++ + V DTGVG+
Sbjct: 520 GKSFRGDKSRIRQLIFNLLGNAVKFTERGSVELVFSNSQSSMSKSKEQLNIDVIDTGVGI 579

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
            N  L     PF Q   S   +  GTGLGL + K + +   G  Y+ S   KG+   + 
Sbjct: 580 PNDRLATIFDPFTQAEASTTRQFGGTGLGLAIVKKLSNLMGGDAYVSSELGKGSKFTVT 638



 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/139 (11%), Positives = 42/139 (30%), Gaps = 6/139 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN--HIGDLLKRQNTWYGK 146
            +  G    ++    K  G    + IG +  D+   +         I D L + +T   +
Sbjct: 294 TNRDGLTTWVNSAFEKLSGYQLTETIGKKPGDLLQGIDTSKEEIKRISDELSQGHTVQSE 353

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
              +  +G   ++ I +   PI + + +   F    +   +          ++  +    
Sbjct: 354 LLNYHKDGRPYWIDIVI--TPIRNIHNQIEQF--IAVERDSSDRKQLEQNLQQAVQVADA 409

Query: 207 LHEIKKGHSSVEKEKYDIF 225
            +  K    +    +    
Sbjct: 410 SNRAKSTFLATMSHELRTP 428



 Score = 47.7 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/138 (11%), Positives = 40/138 (28%), Gaps = 7/138 (5%)

Query: 316 DEGENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
           ++  +     V+       +    G   + N +F  L+ Y+  + I    G   LL    
Sbjct: 274 EKERSQLAMVVEHASDAIVITNRDGLTTWVNSAFEKLSGYQLTETIGKKPG--DLLQGID 331

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
            S     +   +           + L     +      +  +     N   +      +E
Sbjct: 332 TSKEEIKR---ISDELSQGHTVQSELLNYHKDGRPY-WIDIVITPIRNIHNQIEQFIAVE 387

Query: 435 PEDVDTRINKRKMEIEVM 452
            +  D +  ++ ++  V 
Sbjct: 388 RDSSDRKQLEQNLQQAVQ 405


>gi|162449198|ref|YP_001611566.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
 gi|161159780|emb|CAN91085.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
          Length = 779

 Score =  338 bits (867), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 100/644 (15%), Positives = 205/644 (31%), Gaps = 38/644 (5%)

Query: 185 HVNRVDNDPRALGK----RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV 240
             +RV     A  +       ++            ++  +  D                 
Sbjct: 10  RCSRVPQGTPASLRPRHAHQLEREPPGAGNGSAARALGADGQDNPGAFEVGWIALDTFDG 69

Query: 241 SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF 300
           S++ E    + +     ++P   +   S            +                 + 
Sbjct: 70  STIDESVVTRSNRSSGRRWPCAAAGGRSRRRLMGHCCARHSPLPAATMTARRCGEQDGNG 129

Query: 301 EYLSHRNHPSLSAYFDEGENLTPE--TVDKCPIPF------FVYSHGNLFYANPSFLLLT 352
           E     N                                   + + G +   N     + 
Sbjct: 130 EPRRVANVHPCCRLCRMDPTGLGADLQFRLLVEGVKDYAIFMLDTEGRVISWNAGAEQIK 189

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
            Y + + I      S    A  +        +   R              ++ +     A
Sbjct: 190 GYSAQEVIG--SHFSRFYPAEAIERKWPQTELAEARRVGR---FEDEGWRVRKDGSMFWA 244

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINRE 471
              I         E      I  +  + +  +  +     +  +++E   D  I +++ E
Sbjct: 245 -NVIITALRGPDGELRGFCKITRDLTERKRQEESLRQSEERFRTLVEGVKDYAIFMLDPE 303

Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
           G +   N    ++ GY  ++++   F+ F               + +     + E     
Sbjct: 304 GRVTMWNAGAERIKGYSAQEVIGTHFSRFYPAEAIERGRPE-AVLAAARREGSFEDEGWR 362

Query: 532 STKEEKLLS----LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
             K+         +  I         +S    D+SE K+ +   S+        +    +
Sbjct: 363 VRKDGSSFWASVLVTAIYGPSGELRGFSKITRDLSERKRLEQMESN--------ARQMEE 414

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           F+A ++HE+R PL  I   + V+   +     N + +  A  ++R    ++ +V+DLLD+
Sbjct: 415 FVAMLAHELRNPLAPIANATSVL---KLEGKDNAQVVWAAGLMERQLGQLVRLVDDLLDV 471

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN-IPRILADLRSVKQ 706
           S+I  GK+ L  + + L + V+ A    + + + +   +        +  +  DL  + Q
Sbjct: 472 SRITRGKIALESKRIDLADVVTRAAEASRTWIDAREQTLELQLPEGPLAIVSGDLARLTQ 531

Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
           +  N+L NA  FTP  G I ++     +   ILRVRD GVG++   L +    F Q    
Sbjct: 532 VVSNLLHNAAKFTPPRGAIRVTVE-ADDAHAILRVRDNGVGISPELLPQVFDLFTQGDRG 590

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFP 809
                 G GLGL + + +V+ + G     S  P +G+   +  P
Sbjct: 591 LDRVEGGLGLGLTIVRRLVELHGGTVQALSEGPGRGSEFIVRLP 634



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/365 (10%), Positives = 100/365 (27%), Gaps = 9/365 (2%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + +D  G +   +    +  G  A ++IG           I+      +L + +     
Sbjct: 169 IFMLDTEGRVISWNAGAEQIKGYSAQEVIGSHFSRFYPAEAIERKWPQTELAEARRVGRF 228

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +   W +         ++    +   + E  GF    I              ++ +++F 
Sbjct: 229 EDEGWRVRKDGSMFWANVIITALRGPDGELRGF--CKITRDLTERKRQEESLRQSEERFR 286

Query: 206 HLHEIKKGHS-SVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEKYPLL 262
            L E  K ++  +   +  +    +    ++     +V        +  + ++  +   +
Sbjct: 287 TLVEGVKDYAIFMLDPEGRVTMWNAGAERIKGYSAQEVIGTHFSRFYPAEAIERGRPEAV 346

Query: 263 TSEESSLPEQEDFHTI---NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
            +        ED       + + +        +   S E   +       S     ++ E
Sbjct: 347 LAAARREGSFEDEGWRVRKDGSSFWASVLVTAIYGPSGELRGFSKITRDLSERKRLEQME 406

Query: 320 NLTPETVDKCPIPFFVYSHGNLFYANP-SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
           +   +  +   +      +     AN  S L L    +   +  AG +   L       +
Sbjct: 407 SNARQMEEFVAMLAHELRNPLAPIANATSVLKLEGKDNAQVVWAAGLMERQLGQLVRLVD 466

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
           + +    + R      +    L  +      +        E+  +         I   D+
Sbjct: 467 DLLDVSRITRGKIALESKRIDLADVVTRAAEASRTWIDAREQTLELQLPEGPLAIVSGDL 526

Query: 439 DTRIN 443
                
Sbjct: 527 ARLTQ 531


>gi|298249186|ref|ZP_06972990.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297547190|gb|EFH81057.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 845

 Score =  338 bits (867), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 112/735 (15%), Positives = 237/735 (32%), Gaps = 54/735 (7%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDV----SDILHIDPNNHIGDLLKRQNTWYGK 146
             G + +I++           +++G  L D+    SD    +          R  T   +
Sbjct: 144 PDGLVLDINQRPLADAHLRREQVVGTPLTDLPAWSSDPAVQEHLRAAIARAARGETVRFE 203

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
             + P    +L + I +        +++       G               + L      
Sbjct: 204 AKIHPRL--DLSLAILMTITAHRDASQQVEYLICAG--RDITERKHAEDELRTLVDALPQ 259

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
           L  I +    V      +         L        L   +      ++      + +  
Sbjct: 260 LVWIARPDGYVTYHNQRLI--DYMAMTLEQAEGDGWLASVHPDDRQRVRAAWQTSIQTGV 317

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE-- 324
               E       +             +N       ++            ++    + E  
Sbjct: 318 PYEVELRLQDGTSGAYRWFLVRGMPQRNAQGTILHWVGTCTDIDDQKRAEQRIKESEENW 377

Query: 325 --TVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
               +  P   +     G + Y N  +  LT+    + +              L   +A 
Sbjct: 378 RVLAETVPQLVWTTRPDGRVDYCNQRYCDLTQ-ADFEQLRDYRW------RQFLHPEDAE 430

Query: 382 KPVMLYR---SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
           + + L +   +         RL   Q                 ++  +     G   +  
Sbjct: 431 RALTLRQQSLATGELFENEQRLRDGQT--GRYRWFLARALPVRDEAGQIDKWFGTCTDID 488

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
           D +  +  +     ++  ++ ++  GI +   E  I+  N    ++ GY  ED+      
Sbjct: 489 DQKRMEEALRESQERVNILMNSSIIGIFLA-EEEQIVDVNDTYLRMTGYTREDLQAGNIN 547

Query: 499 VFL--EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-CYS 555
                     +       E++        EK  +   K+  LL + + +  L        
Sbjct: 548 WMRMTPPKYLARTQQARQELVVQQYGTPYEKEYVC--KDGSLLPVVVGVVALRRDPLHTI 605

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
             + D S  K+ + +              K DF++  SHE+R PL A+    + +  +R 
Sbjct: 606 GFVLDNSARKELEQR--------------KDDFISMASHELRNPLAALKMQIQ-LVRKRL 650

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
               +       + ++     +  ++ +LLD+SKI++G++    E V LD  + E    +
Sbjct: 651 ERQSHHEAATALSRVEGPVKQLERLIGELLDVSKIQAGRLEYLQETVDLDALLHEVADTM 710

Query: 676 QLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
           Q  +    I++R       PR+L  D   + Q+  N+LSNAI ++P    + +  + +  
Sbjct: 711 QQLSTTHTIVVR----GAAPRVLVGDKDRLGQVFTNLLSNAIKYSPGAETVEMDLSASEE 766

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
             V +RV D G+G+   + +K  + F ++   +Q    G G+GL +   +V  + G   +
Sbjct: 767 -TVTVRVHDHGLGIPREQRDKIFERFYRVAGPKQKAIPGLGMGLYIVAEIVKHHGGTLTV 825

Query: 795 FSTPAKGTLIEIIFP 809
            S   KG+   +  P
Sbjct: 826 DSAVGKGSTFTVTLP 840



 Score =  134 bits (337), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 56/524 (10%), Positives = 126/524 (24%), Gaps = 38/524 (7%)

Query: 69  DSENTFVFDPIPRTV--RFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH 126
           +++ T    P  R       + +D    +   +       G    ++           L 
Sbjct: 3   NAKQTRRVTPGSRETLPDALFVVDDTETIVYANASAQAITGTTPEELRRNSFWRCVPRLV 62

Query: 127 IDP-NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVH 185
             P    +    + +        + P+  T     + ++  P               +  
Sbjct: 63  STPLYQAVQKAKQTREP-TEVEYVSPVTNT----WLHVSLSPT-DEGLAL-------LFQ 109

Query: 186 VNRVDNDPRALGKRLDKKFSHLHEI-KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244
            N      +    R ++ +  L E    G + V  +   +   Q P     ++ +    T
Sbjct: 110 ENLEPPHFQDALSRNEQMYRDLLESFSDGVTIVTPDGLVLDINQRPLADAHLRREQVVGT 169

Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFH-----TINLNQYTKKQYFGTLQNNSKES 299
                            L +  +     E           L+         T   ++ + 
Sbjct: 170 PLTDLPAWSSDPAVQEHLRAAIARAARGETVRFEAKIHPRLDLSLAILMTITAHRDASQQ 229

Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVD 358
            EYL               E+     VD  P   ++    G + Y N   +         
Sbjct: 230 VEYLICAGRDITER--KHAEDELRTLVDALPQLVWIARPDGYVTYHNQRLIDYMAMT--- 284

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
            +E A G   L                             RL                  
Sbjct: 285 -LEQAEGDGWLASVHPDDRQRVRAAWQTSIQTGVPYEVELRLQDGTS--GAYRWFLVRGM 341

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
            + N     +   G   +  D +  +++++        + E     +     +G +   N
Sbjct: 342 PQRNAQGTILHWVGTCTDIDDQKRAEQRIKESEENWRVLAETVPQLVWTTRPDGRVDYCN 401

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE-EK 537
           +    L     E +    +  FL             + L+    +  E        +  +
Sbjct: 402 QRYCDLTQADFEQLRDYRWRQFLHPEDAERALTLRQQSLATG--ELFENEQRLRDGQTGR 459

Query: 538 LLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKI 577
                     +   +     +  T  DI + K+ +  L  +++ 
Sbjct: 460 YRWFLARALPVRDEAGQIDKWFGTCTDIDDQKRMEEALRESQER 503



 Score =  101 bits (251), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 34/399 (8%), Positives = 94/399 (23%), Gaps = 24/399 (6%)

Query: 65  TNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI 124
           T    +E+           +  W     GY+   ++ L   +     +  G         
Sbjct: 241 TERKHAEDELRTLVDALP-QLVWIARPDGYVTYHNQRLIDYMAMTLEQAEGDGWLASVHP 299

Query: 125 LHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIV 184
                         +    Y          +  Y    +  +P  +       +   G  
Sbjct: 300 DDRQRVRAAWQTSIQTGVPYEVELRLQDGTSGAYRWFLVRGMPQRNAQGTILHW--VGTC 357

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKN--KVSS 242
                        K  ++ +  L E         +    +         L   +  ++  
Sbjct: 358 TDIDDQKRAEQRIKESEENWRVLAETVPQLVWTTRPDGRVDYCNQRYCDLTQADFEQLRD 417

Query: 243 LTE---YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
                  +    +   T +   L + E    EQ                   +++ + + 
Sbjct: 418 YRWRQFLHPEDAERALTLRQQSLATGELFENEQRLRDGQTGRYRWFLARALPVRDEAGQI 477

Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCP----IPFFVYSHGNLFYANPSFLLLTKYK 355
            ++             +E    + E V+       I  F+     +   N ++L +T Y 
Sbjct: 478 DKWFGTCTDIDDQKRMEEALRESQERVNILMNSSIIGIFLAEEEQIVDVNDTYLRMTGYT 537

Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
             D          +     L+     +  ++ +   T          +  +      +  
Sbjct: 538 REDLQAGNINWMRMTPPKYLARTQQARQELVVQQYGTPYEKE----YVCKDGSLLPVVVG 593

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
           +   + +     +   G   ++      ++++E      
Sbjct: 594 VVALRRD----PLHTIGFVLDNS----ARKELEQRKDDF 624



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 28/382 (7%), Positives = 88/382 (23%), Gaps = 17/382 (4%)

Query: 55  TDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI 114
           TD + +  +     +SE  +         +  W     G +   ++           ++ 
Sbjct: 358 TDIDDQKRAEQRIKESEENWRVLAETVP-QLVWTTRPDGRVDYCNQRYCDLTQADFEQLR 416

Query: 115 GMRLCDVSDILHIDPNNHIGDL-LKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNR 173
             R          +    +    L     +  +  L   + T  Y      ALP+     
Sbjct: 417 DYRWRQFLHPEDAERALTLRQQSLATGELFENEQRLRDGQ-TGRYRWFLARALPVRDEAG 475

Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ---SP 230
           +    + FG               +   ++ + L         + +E+  +         
Sbjct: 476 QID--KWFGTCTDIDDQKRMEEALRESQERVNILMNSSIIGIFLAEEEQIVDVNDTYLRM 533

Query: 231 PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL--LTSEESSLPEQEDFHTINLNQYTKKQY 288
             + R   +  ++          L   +     L  ++   P ++++   + +       
Sbjct: 534 TGYTREDLQAGNINWMRMTPPKYLARTQQARQELVVQQYGTPYEKEYVCKDGSLLPVVVG 593

Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSF 348
              L+ +       +      S     ++ ++                    +       
Sbjct: 594 VVALRRD---PLHTIGFVLDNSARKELEQRKDDFISMASHELRNPLAALKMQIQLVRKRL 650

Query: 349 LLLTKYKSVDDIEIAGG----LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
              + +++   +    G    L  L+             +   +      A    +    
Sbjct: 651 ERQSHHEAATALSRVEGPVKQLERLIGELLDVSKIQAGRLEYLQETVDLDALLHEVADTM 710

Query: 405 WNRENSLAMTFIPFEKANQFPE 426
                +  +            +
Sbjct: 711 QQLSTTHTIVVRGAAPRVLVGD 732



 Score = 48.1 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/134 (12%), Positives = 46/134 (34%), Gaps = 7/134 (5%)

Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
           E   D + +++    I+  N +   + G   E++ R  F   + +   + +   + +   
Sbjct: 16  ETLPDALFVVDDTETIVYANASAQAITGTTPEELRRNSFWRCVPRLVSTPLYQAVQKAKQ 75

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578
                 +E ++  +      L + +           +L   +  E    ++ LS  +++ 
Sbjct: 76  TREPTEVEYVSPVTN---TWLHVSLSPT----DEGLALLFQENLEPPHFQDALSRNEQMY 128

Query: 579 EKESSHKSDFLARV 592
                  SD +  V
Sbjct: 129 RDLLESFSDGVTIV 142


>gi|270307577|ref|YP_003329635.1| sensor histidine kinase [Dehalococcoides sp. VS]
 gi|270153469|gb|ACZ61307.1| sensor histidine kinase [Dehalococcoides sp. VS]
          Length = 1062

 Score =  338 bits (867), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 111/755 (14%), Positives = 258/755 (34%), Gaps = 64/755 (8%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCD-VSDILHIDPNNHIGDLL---KRQNTWY 144
            ++    + +I++   + +G     ++G    +             +   +   K +    
Sbjct: 326  LNEDETVAQINKRGCQILGYEYQDILGQNWFENFIPGYRRLIKRSMYKQIISGKTELPER 385

Query: 145  GKTTLWPIEG-TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                +   +G   + +     +  I S+N + S     G               +  ++K
Sbjct: 386  YMDVVLTKDGQEKVILW---HSTAIRSKNGQMSSILYSG--EDVTELKHTEEALRMSEEK 440

Query: 204  FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL--RMKNKVSSLTEYYA------HKDDVLK 255
            +  L E     +     K  I         +  R ++++  +               ++ 
Sbjct: 441  YHTLFETMAQGAIYVDNKGIIIETNPAANTIFGRHESELLGVNIADPIWTYVHEDGSIMP 500

Query: 256  TEKYPLLTSEESSLPEQEDF----HTINLNQYTKKQYFGTL-----QNNSKESFEYLSHR 306
              + P++ + ++    +  F    + ++        +   L     +N+      +    
Sbjct: 501  PGENPVIAALKTGKAIRNVFMGIKNNLSGEIRWVNLFALPLFRINQENSYMVYTTFTDIS 560

Query: 307  NHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGG 365
               +        EN      +        +  +G +   N     +  Y   + +     
Sbjct: 561  RLKNARDALTRSENRYRSIFETAASIIISFDRNGIINDCNMRIQEILGYTPAEML-GTNF 619

Query: 366  LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
            L   +      D        L R D   I  +     +  +      +        ++  
Sbjct: 620  LD--IIHESFRDEVRNHIASLNRGD---IIYNKDCRMLHKDG-QYRDVMVNCSTLLDEHG 673

Query: 426  ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
              +    I  +  + +     +     ++ S+    ++GIA+++  G +   N+ + K+ 
Sbjct: 674  SVLNAICIISDMTEQKQTHYALIASEEKIRSMFNGVNEGIAVMDTSGYVTEINQTMLKMN 733

Query: 486  GY-PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
                 + ++ +    F+      +   Y+ +  SL+  + LE   L     E    +   
Sbjct: 734  NCTSKDQLIGRHALEFVSLKDRDMARSYMNQADSLNEIRNLELRCLRPDGTEYFSQISGA 793

Query: 545  IKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
            + +          +   DI+E KQ + +L    ++A        +  + ++HEI  PLT 
Sbjct: 794  VLRGYAGEIKGIIILSVDITERKQIEQQLIMTDRMA-----SVGELASGLAHEINNPLTG 848

Query: 603  IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
            I+GFSE+               E    I R      ++V +LL  ++    +     +  
Sbjct: 849  IVGFSEL----LLMNELEESIKEDVQTIHREALRAAEVVRNLLTFAR----QQPPTRKAG 900

Query: 663  SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA-----IH 717
             ++ ++ + + L +       I   T    ++PR++ D   ++Q+ +NI+ NA     + 
Sbjct: 901  DINLSIHKVLELRKHDHRINNIRCITELDPDLPRVMLDFFQIQQVLINIIINAEFFLRLK 960

Query: 718  FTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
                  QIII T+   N+ VI+ + D G G++   +++   PF          G+GTGLG
Sbjct: 961  ---EHPQIIIKTS-QHNKHVIISISDNGPGISPENIKRIFDPFFTTK----EVGKGTGLG 1012

Query: 778  LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
            L +   +++ + G+  + STP  GT   I  P+ D
Sbjct: 1013 LSICHGIIEEHNGRISVESTPRNGTTFRIELPVAD 1047



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 18/159 (11%), Positives = 55/159 (34%), Gaps = 5/159 (3%)

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
                +    + +++ E  +    L+     I ++N +  +   N+   ++ GY  +DIL
Sbjct: 292 IRRRRELARTEIRLKEERDKAQLYLDIAGVIIVVLNEDETVAQINKRGCQILGYEYQDIL 351

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK---ITLGSTKEEKLLSLRIIIKKLPF 550
            + +          ++   + + +     +  E+   + L    +EK++       +   
Sbjct: 352 GQNWFENFIPGYRRLIKRSMYKQIISGKTELPERYMDVVLTKDGQEKVILWHSTAIRSKN 411

Query: 551 SS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
                   +  D++E K  +  L  +++         + 
Sbjct: 412 GQMSSILYSGEDVTELKHTEEALRMSEEKYHTLFETMAQ 450


>gi|170077996|ref|YP_001734634.1| two-component hybrid sensor and regulator [Synechococcus sp. PCC
           7002]
 gi|169885665|gb|ACA99378.1| two-component hybrid sensor and regulator [Synechococcus sp. PCC
           7002]
          Length = 1019

 Score =  338 bits (867), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 119/695 (17%), Positives = 222/695 (31%), Gaps = 59/695 (8%)

Query: 156 NLYVPIDLAALPIYSRNREFSGF-------RGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           N  +P+      IY     F G        + F    ++R  N        L ++  +  
Sbjct: 184 NQDLPVYGVLAYIYDEQNNFIGAAYLEKDPQNFLYSLLDRAANASTTAETLLVRREGNNI 243

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
                          +         L  +  + S           +        T++   
Sbjct: 244 RYLNPLRFASDPPLRLSRSLDQDSLLATQAILQSRRLVRGTDYRDILVVGASFETTQAPW 303

Query: 269 LPEQED-FHTINLNQYTKKQYFGTLQNNSKESFEYLSHR------------NHPSLSAYF 315
           +   +      N            L         ++ ++               +     
Sbjct: 304 IVIYKVNLREANAPFRQLAIAISGLSGLLIGVVFWVGYQMLRLQRFKLEAIAREAEIEKA 363

Query: 316 DEGENLTPETVDKCPIPF----FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
                     +            +   G     N +   +T Y   D++        L+ 
Sbjct: 364 QIRAASASRYLTAIETAIDGYAVLDDRGYFLEVNVALGEMTGY-DCDELLQRSIFDLLIT 422

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
                     +     R               QW  +             +   +     
Sbjct: 423 DNLDPAQLLTEWGDRRRLK----------LYQQWRHKKGQIREMQLSLTTDLSEDQSRFF 472

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
               +    +     +     +L   ++     I +   +G IL  NR  + L GY + +
Sbjct: 473 IFVQDITQQKQANAALGESEQRLYRAIQDAPFPILLYASDGEILQLNRTWTVLTGYDITE 532

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILS----LDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
           I       +  +         L  I       +     E   L    E+++         
Sbjct: 533 IP--TIAAWAAKAYGEAYLTALQGIEKVYEIQNSTHDGEYAILTKDGEKRIWDFSSAPLG 590

Query: 548 LPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
                         D+++ K ++  L  AKK AE+ +  KS FLA +SHE+RTPL  I+G
Sbjct: 591 TLPDGRKLQITMAMDVTDRKADELALQAAKKQAEEANRAKSLFLANMSHELRTPLNGILG 650

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
           +++++    F    +       + I++ G  +L ++ D+LD SKIE+ ++ L    V   
Sbjct: 651 YAQILM---FDESLSAEQKSSLSIIEQCGQHLLRLIADVLDFSKIEAQRLELIPTAVQFH 707

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ 724
             + + I   Q+ A EK++L+      +IP  +L D + ++Q+ LN+L NAI FT  G  
Sbjct: 708 YFILDIIQTCQIKATEKQLLLNYDIDPDIPDYLLVDDQRLRQVLLNLLGNAIKFTHQGSV 767

Query: 725 II-ISTTHTSN----------EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
           ++ +  +                V   VRDTG G+     +K   PF QI + +     G
Sbjct: 768 VLDVQLSQPPQTPPKSPKHHWHRVHFAVRDTGCGIDPENHQKIFLPFEQIGDRRSRPH-G 826

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           TGLGL +++ +V    G+  + S P KG+      
Sbjct: 827 TGLGLAISQKLVAMMGGELQLTSYPNKGSCFSFDL 861



 Score = 48.9 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/244 (11%), Positives = 60/244 (24%), Gaps = 15/244 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D  GY  E++  L +  G    +++   + D+    ++DP      LL           
Sbjct: 387 LDDRGYFLEVNVALGEMTGYDCDELLQRSIFDLLITDNLDP----AQLLTEWGDRRRLKL 442

Query: 149 L---WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
                  +G    + + L       ++R F        V          A     +++  
Sbjct: 443 YQQWRHKKGQIREMQLSLTTDLSEDQSRFFI------FVQDITQQKQANAALGESEQRLY 496

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
              +       +     +I           +     +     A        E Y      
Sbjct: 497 RAIQDAPFPILLYASDGEILQLNR--TWTVLTGYDITEIPTIAAWAAKAYGEAYLTALQG 554

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
              + E ++           K     + + S      L       ++   D  +    E 
Sbjct: 555 IEKVYEIQNSTHDGEYAILTKDGEKRIWDFSSAPLGTLPDGRKLQITMAMDVTDRKADEL 614

Query: 326 VDKC 329
             + 
Sbjct: 615 ALQA 618


>gi|92117002|ref|YP_576731.1| periplasmic sensor signal transduction histidine kinase
           [Nitrobacter hamburgensis X14]
 gi|91799896|gb|ABE62271.1| periplasmic sensor signal transduction histidine kinase
           [Nitrobacter hamburgensis X14]
          Length = 775

 Score =  338 bits (867), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 136/650 (20%), Positives = 250/650 (38%), Gaps = 52/650 (8%)

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
            D++      I+       +    I + QSP         V+ +           +    
Sbjct: 128 ADQRVLARVPIEAAPGESSRILELISTAQSPALRGMSSASVADIILLDGSGALATQRVVR 187

Query: 260 PLLT-SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
            LL             +        T     G +      +F + S R         D  
Sbjct: 188 SLLGHVTVIQEKTDSVWRPDTALSITLSATTGFVVLILGFAFHWQSTRAREG-DVINDAV 246

Query: 319 ENLTPETVDKCPIPFFVYSH--GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
                  +++     + +    G + + + S   +   +S  D+   G +S L +   + 
Sbjct: 247 RGRIDTALNRGRCGLWDWDLSRGRI-FWSQSMFTMLGLESRSDLLTFGEISALANPDDID 305

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
                  ++        I    +   ++ +  + + +                  GI  +
Sbjct: 306 LFAIGDQLIS-----GKIHHIDQSFRMRHSGGHWIWLRVRCELSQGAGDGAAHLIGIAVD 360

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             + +    K     ++L   +E   +   + + +  ++  N    +L   P   +    
Sbjct: 361 ITEQKSLAEKTVEADLRLRDAIETIPEAFVLWDADDRLVLCNSHFQRLHKLPESAVAAGT 420

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556
               + +     M+                +           L++    ++      Y  
Sbjct: 421 SYETVIEVGR--MHEICARPPETGTTAPGARTFEAQLDNGCWLNIS---ERRTKDGGYVS 475

Query: 557 TMHDISEWKQEKNKLSHA-----------------------------------KKIAEKE 581
              DI+  K+ + KL                                      K  AE  
Sbjct: 476 VGTDITRIKEHEQKLVDNDLRLRATVIDLKRTQATLEQQAIELADLAQKYAKEKDRAEDA 535

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
           +  KS FLA +SHE+RTPL AIIGFSE++ N  FG LG+ +Y EY + I  SG  +L+++
Sbjct: 536 NRAKSKFLANMSHELRTPLNAIIGFSEIMSNGMFGTLGSEKYSEYCHDILTSGQYLLEVI 595

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701
           ND+LD+SKIE+G+M L  EP+ L   ++E++ +V    ++K++       ++I  I AD 
Sbjct: 596 NDVLDMSKIEAGRMKLDMEPLDLSRTLAESLRVVTGRTSDKKLTFDVRIDDDI-AITADH 654

Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761
           R+VKQI +N+LSNA+ FTP GG+++  +   +N  V L + DTG+G+  + L K  KPF 
Sbjct: 655 RAVKQIIVNLLSNAVKFTPDGGRVMARSQVFAN-SVALTIADTGIGIAPHSLRKLGKPFE 713

Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
           Q+ +       G+GLGL +AK++V+ + G   + S P  GT++ +  P +
Sbjct: 714 QVESQLTKTYAGSGLGLAIAKSLVNLHGGSMRLRSKPGTGTVVRVTLPRH 763


>gi|168702165|ref|ZP_02734442.1| PAS/PAC sensor hybrid histidine kinase [Gemmata obscuriglobus UQM
           2246]
          Length = 881

 Score =  338 bits (866), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 109/714 (15%), Positives = 231/714 (32%), Gaps = 59/714 (8%)

Query: 122 SDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAAL--PIYSRNREFSGFR 179
            ++   D    +    +R            I   +    I L A    +  R        
Sbjct: 58  WNLPQFDALRALEVARERVPEVPFIIVSGSIGEEHAVRAIKLGASDYLLKDRLGRLGPAV 117

Query: 180 GFGIVH--VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDI-FSQQSPPPHLRM 236
              +V   +   +   R   +  ++++  L +         +    I ++ +    +   
Sbjct: 118 KQALVQRDLRDAERRARDELRASEERYRVLADSVPQIVWTARPDGSIDYTNRRATEYAGT 177

Query: 237 KNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFH--TINLNQYTKKQYFGTLQN 294
             +++  +       D L            +  P + +F     +            L++
Sbjct: 178 NGRLTDWSWERLVHPDDLPHTMATWGAVLRTGEPHEFEFRLRRSDGAFRWHLARQVALRS 237

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTK 353
                  +              E      + +        V    G + Y N     L  
Sbjct: 238 PDGAVERWFGTCTDIHDQKTTAELLAQDAQVLAHVRDSVVVTDPDGVVTYWNAGATRLFG 297

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
           + + + I      S    A    + +     +  R+D T                  + +
Sbjct: 298 WTAQEMIGRRY--SDRFPAEFRPELSRE---VRARADGTEWHGEYE---DLRKDGTRVWV 349

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
                   +         G+  +  D +  +         L +++ + +D I  I+  G 
Sbjct: 350 HARVGPIRDAAGRVCGVLGLASDLTDRKRAE-------ESLAAVMRSVADAIVTIDERGT 402

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLG 531
           I+S N A  +LF Y  ++++ +   V + +      + YL +     +   +   +   G
Sbjct: 403 IVSVNPATERLFNYTADELVGRNVRVLVSEPPRGRHDSYLEDHFGTGVSSLIGVGREVEG 462

Query: 532 STKEEKLLS--LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
             K+       L +   ++  +  ++  + D++E K+ + +   A+K+            
Sbjct: 463 RRKDGTTFPADLSVTEFRIEDARHFTGVVRDVTERKRLEAQFRQAQKM-----EAVGRLA 517

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
             V+H+    LT I G+++++                   +  +G     + + LL  S+
Sbjct: 518 GGVAHDFNNLLTVINGYTDLLLGGPLAEND----RAALAAVRDAGERAAGLTSQLLAFSR 573

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709
               K  +  + + L E V++A  L++     + + +  +       I ADL  + Q+ +
Sbjct: 574 ----KAIVAPQVLDLKEVVAQAERLLRRLI-GEDVALTVTSHAGPCWIEADLNQLDQVIM 628

Query: 710 NILSNAIHFTPSGGQIIISTTH--------------TSNEEVILRVRDTGVGMTNYELEK 755
           N+  NA    P+GG++   T                 +   V L VRDTG GM+N    +
Sbjct: 629 NLAVNARDAMPTGGRLTFETRRIPVAPGSSTDSGELRAGWYVSLAVRDTGCGMSNEVKAR 688

Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             +PF          G+GTGLGL +   +V    G  +  S P  GT   I+FP
Sbjct: 689 LFEPFFTTKGP----GKGTGLGLAVVHGIVKQAGGHIWAESAPGAGTTFHILFP 738



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 34/393 (8%), Positives = 89/393 (22%), Gaps = 32/393 (8%)

Query: 58  NQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMR 117
           + E  +      SE  +         +  W     G +   +    +  G    ++    
Sbjct: 128 DAERRARDELRASEERYRVLADSVP-QIVWTARPDGSIDYTNRRATEYAG-TNGRLTDWS 185

Query: 118 LCDVSDILHIDPNNHIG-DLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFS 176
              +     +         +L+       +  L   +G   +       + + S +    
Sbjct: 186 WERLVHPDDLPHTMATWGAVLRTGEPHEFEFRLRRSDG--AFRWHLARQVALRSPDGAVE 243

Query: 177 GFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM 236
             R FG             L   L +    L  ++      + +    +           
Sbjct: 244 --RWFGTCTDIHDQKTTAEL---LAQDAQVLAHVRDSVVVTDPDGVVTYWNAGATRLFGW 298

Query: 237 KNKV---SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293
             +       ++ +  +     + +            E ED    +  +       G ++
Sbjct: 299 TAQEMIGRRYSDRFPAEFRPELSREVRARADGTEWHGEYEDLRK-DGTRVWVHARVGPIR 357

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLT 352
           + +      L   +  +     +E        +         +   G +   NP+   L 
Sbjct: 358 DAAGRVCGVLGLASDLTDRKRAEES---LAAVMRSVADAIVTIDERGTIVSVNPATERLF 414

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDN--------------NAIKPVMLYRSDRTCIAASA 398
            Y + + +     +          D+                 + V   R D T   A  
Sbjct: 415 NYTADELVGRNVRVLVSEPPRGRHDSYLEDHFGTGVSSLIGVGREVEGRRKDGTTFPADL 474

Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
            +   +               +  +      Q 
Sbjct: 475 SVTEFRIEDARHFTGVVRDVTERKRLEAQFRQA 507


>gi|330962291|gb|EGH62551.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. maculicola str. ES4326]
          Length = 775

 Score =  338 bits (866), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 106/425 (24%), Positives = 199/425 (46%), Gaps = 18/425 (4%)

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
           AR+H +Q N +       +  +   +         +          +R +     +L  I
Sbjct: 215 ARVHQVQRNAQRLALGHPLLPQPPEKDEIGQLGTRLVEAGQLLAERERALRDNEERLRLI 274

Query: 458 LEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           +E   D GI  ++R G +++ N    ++ GY  ++I+ + F+VF               +
Sbjct: 275 IEGVKDYGIFALDRNGYVITWNAGAERIKGYTEQEIIGQHFSVFYLPQECPQHPDM--AL 332

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNKLS 572
               +     + +    K+       ++I     S      +S    DIS+ +  +  L 
Sbjct: 333 HEATVNGRYTEESWRRRKDGSRFWASVVITAQYDSNDQLRGFSKITRDISDRRVAEIALG 392

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
            A++ AE+ S  KS+FL+R+SHE+RTPL +I+GF+++++                 +I R
Sbjct: 393 TAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLLEMD-----SPASQRPQVGHILR 447

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI--RTSF 690
           +G  +L ++N++LDI++IE+G ++L  EPV L   + EA+ LV   A +  I +      
Sbjct: 448 AGQHLLKLINEVLDIARIEAGHISLSLEPVPLSNVLQEALVLVSPMAADGNIELPALPQL 507

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
            + +  ++AD + + Q+ LN+LSNAI +    GQ+ I    ++   V + V D+G G+  
Sbjct: 508 PDELG-VVADRQRLIQVLLNLLSNAIKYNRPNGQVRIEVEQSAE-RVAVSVVDSGHGIAP 565

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             +++  KPF ++        EGTGLGL L+K+M++   G   + S P +G+   +  P+
Sbjct: 566 ELIDQLFKPFERLNADPS--VEGTGLGLALSKSMLEMMHGTLSVHSVPGEGSRFTLELPV 623

Query: 811 YDTSH 815
                
Sbjct: 624 VQVQQ 628



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/259 (8%), Positives = 71/259 (27%), Gaps = 20/259 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH--IDPNNHIGDLLKRQNTW 143
            + +D +GY+   +    +  G    ++IG               P+  + +       +
Sbjct: 283 IFALDRNGYVITWNAGAERIKGYTEQEIIGQHFSVFYLPQECPQHPDMALHEATVNGR-Y 341

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGF---------RGFGIVHVNRVDNDPR 194
             ++     +G+  +  + + A   Y  N +  GF         R    + +     +  
Sbjct: 342 TEESWRRRKDGSRFWASVVITAQ--YDSNDQLRGFSKITRDISDRRVAEIALGTAREEAE 399

Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254
              +   +  S +    +   +       +    SP         +    ++      + 
Sbjct: 400 RASRAKSEFLSRMSHELRTPLNSILGFAQLLEMDSPASQRPQVGHILRAGQHLLKL--IN 457

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
           +      + +   SL  +     + L+   ++         +  + E  +    P     
Sbjct: 458 EVLDIARIEAGHISLSLEP----VPLSNVLQEALVLVSPMAADGNIELPALPQLPDELGV 513

Query: 315 FDEGENLTPETVDKCPIPF 333
             + + L    ++      
Sbjct: 514 VADRQRLIQVLLNLLSNAI 532


>gi|283852829|ref|ZP_06370092.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283571821|gb|EFC19818.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 674

 Score =  338 bits (866), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 105/541 (19%), Positives = 206/541 (38%), Gaps = 33/541 (6%)

Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLL 350
           L      +                   +      V     PF+V    G     N +F +
Sbjct: 8   LLAAGLSALVTAVGAAALCRRRSRRRDDLFLERVVGTLADPFYVKGPDGRFLLVNDAFCI 67

Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
           L      D +       T+      S +     ++L           A    +  +  + 
Sbjct: 68  LAGRSRPDILGRNAA--TVFPGRFGSASLKNDAMVLVCG----FEDIAEESAVDADGRHR 121

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470
             MT                 GI  +    +   R +    ++   I+E  ++GI  ++ 
Sbjct: 122 TFMTRKTLHVDGLGRR--HVVGIIRDITARKEAARALAQSEVRYRRIVETANEGIWAVDA 179

Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530
                  N  ++ + G     ++ +  + FL      +    L   +        E+   
Sbjct: 180 RWRTTYVNAVMAAMLGCDAPGMIGRSASEFLFPEDRELHRAMLRREVLPPGGGVYER--R 237

Query: 531 GSTKEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLS-------HAKKIAE 579
              ++ + +   I +     +S           +I++ KQ +  L         AK+ AE
Sbjct: 238 LKRQDGREIWTIIAVSSEFDASGRFLGSVGMFTNITDRKQAEEALRLSEARLAAAKEAAE 297

Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639
             +  KS+FLA +SHEIRTPL  ++G  +++++       +    +        G  +  
Sbjct: 298 AANKSKSEFLANMSHEIRTPLNGLLGMLQIVEDTAL----DGDQRDCVVTALDCGRRLTR 353

Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL- 698
           ++ D+LD+S++ESGK+ L  +P SL E  +   ++  +  +++ + + T+   ++P +L 
Sbjct: 354 LLTDILDLSRVESGKLVLVADPFSLREVFASIQTVFAVTLDQRGLALETAIHPDVPALLL 413

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-----VILRVRDTGVGMTNYEL 753
            D   ++QI LN++ NA+ FT SG  I +       +E     + L V DTG+G+ + + 
Sbjct: 414 GDEGRIRQILLNLVGNAVKFTRSG-TITLEAGWHPADETGGRRLALAVGDTGIGIPHDKH 472

Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
           +   + F Q+  S     +G GLGL +   +V    G   + S P  GT++  + PL   
Sbjct: 473 DTVFETFTQVDASNTRIHQGAGLGLSIVDRLVRLMGGTVLLDSEPGIGTMVMCLLPLAPA 532

Query: 814 S 814
           +
Sbjct: 533 A 533



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/263 (8%), Positives = 68/263 (25%), Gaps = 20/263 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY- 144
            W +DA      ++  +   +G  A  MIG    +         +  +   + R+     
Sbjct: 174 IWAVDARWRTTYVNAVMAAMLGCDAPGMIGRSASEFLFPE----DRELHRAMLRREVLPP 229

Query: 145 ----GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
                +  L   +G  ++  I +++   +  +  F G    G+              +  
Sbjct: 230 GGGVYERRLKRQDGREIWTIIAVSSE--FDASGRFLG--SVGMFTNITDRKQAEEALRLS 285

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
           + + +   E  +  +  + E     S +   P   +   +  + +     D         
Sbjct: 286 EARLAAAKEAAEAANKSKSEFLANMSHEIRTPLNGLLGMLQIVEDTALDGDQR------- 338

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
                      +      ++   ++ +    +      S   +        +   D+   
Sbjct: 339 DCVVTALDCGRRLTRLLTDILDLSRVESGKLVLVADPFSLREVFASIQTVFAVTLDQRGL 398

Query: 321 LTPETVDKCPIPFFVYSHGNLFY 343
                +        +   G +  
Sbjct: 399 ALETAIHPDVPALLLGDEGRIRQ 421



 Score = 54.3 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 13/238 (5%), Positives = 47/238 (19%), Gaps = 10/238 (4%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD-ILHIDPNNHIGDLLKRQNTWYGKTT 148
              G    +++      G     ++G     V           +   +L     +     
Sbjct: 53  GPDGRFLLVNDAFCILAGRSRPDILGRNAATVFPGRFGSASLKNDAMVLVCG--FEDIAE 110

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
              ++    +                       GI+       +      + + ++  + 
Sbjct: 111 ESAVDADGRHRTFMTRKTLHVDGLGR---RHVVGIIRDITARKEAARALAQSEVRYRRIV 167

Query: 209 EIKKGHSSVEKEKYDIFSQQ---SPPPHLRMKNKVSSLTEYYAHKDDV-LKTEKYPLLTS 264
           E           ++         +          +      +   +D  L          
Sbjct: 168 ETANEGIWAVDARWRTTYVNAVMAAMLGCDAPGMIGRSASEFLFPEDRELHRAMLRREVL 227

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
                  +      +  +        +  + S      +    + +     +E   L+
Sbjct: 228 PPGGGVYERRLKRQDGREIWTIIAVSSEFDASGRFLGSVGMFTNITDRKQAEEALRLS 285


>gi|221210474|ref|ZP_03583454.1| PAS domain protein [Burkholderia multivorans CGD1]
 gi|221169430|gb|EEE01897.1| PAS domain protein [Burkholderia multivorans CGD1]
          Length = 1380

 Score =  338 bits (866), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 130/793 (16%), Positives = 279/793 (35%), Gaps = 71/793 (8%)

Query: 36   TEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFV-FDPIPRTVRFTWN------ 88
            T ++K    C       + +  ++   + T    +      F       R          
Sbjct: 501  THRAKTPTGCPPLLHVESGSADDRPVPTPTLRAPASPVQRNFSYAELHQRALEMYSPPSV 560

Query: 89   -IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
             ID    +  +S+   + + +   ++    +  V   L +D    I   L+   +   + 
Sbjct: 561  IIDKESNVVHLSDNAGRFLRHVGGELSSNIMTLVLPDLRLDLRTAIFRALQTGTSVEARR 620

Query: 148  TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
              W  +       I++   P + +                    +   L    D+    +
Sbjct: 621  VKWTHD--TQVSWINMTVRPFHDK------------------VANADFLLVVFDEVAGRM 660

Query: 208  HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
             +  +  ++ +            P   ++++++    E  A   +  +T    L  S E 
Sbjct: 661  TDEDQAEANGQD-----------PVLAQLEHELQHSREQLATIIEQYETSVEELKASNEE 709

Query: 268  SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
                 E+  + +    + K+   ++      +   +  R   +  A  D    +    + 
Sbjct: 710  LQAINEELRSTSEELESSKEELQSVNEELTTANAEMQARIEDTAKANDDLHNIIASSEI- 768

Query: 328  KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
                  FV     +    P+   +      D       ++  L  P L+D+       L 
Sbjct: 769  ---ATVFVDKEIRIKRFTPNATAIFNLIDSDLGRSLFHITHSLRYPTLADDVRQSFQSLR 825

Query: 388  RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
              +R           I+        +  +P+  A+             +  D    +   
Sbjct: 826  LIERE----------IESEAGRWYLIRLLPYRTAD--DHIDGAVITLIDVTDRHHAEEAA 873

Query: 448  EIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
                 +L  + ++T D  I I +  GII S N    ++FGY  ++++ +   +  E N  
Sbjct: 874  RAGEQRLRLVAQSTKDYAIIIQDGNGIIASWNAGAERIFGYTEDEMIGQDVELIYEPNDR 933

Query: 507  SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR--IIIKKLPFSSCYSLTMHDISEW 564
                      ++    +  +      TK+ + +     +        + ++  + D+++ 
Sbjct: 934  HARVPAHEREVAAREGRA-DDERWHRTKDGRRIFCSGVVTPIADTSFNGFAKIVRDLTQR 992

Query: 565  KQEKNKLSHA-------KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
            K  ++    A       ++ A   +  K +F+A +SHE+R PL  I   +E +  +    
Sbjct: 993  KLSEDANREALAREQAAREQALSSNQLKDEFIAVLSHELRHPLNLIGVRAE-MLPRLPET 1051

Query: 618  LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
               P   E A  I ++      I++DLLD+S+I +GK+ L    V L   +   +   + 
Sbjct: 1052 RDIPAVREAAELIRQAVRAQAQIIDDLLDLSRIRTGKLALELSRVDLTAVLRTIVDTCEA 1111

Query: 678  YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737
             A+ + +++     ++    LAD    +QI  N++SNA+ FT +GG+I++  TH +   +
Sbjct: 1112 DAHARGLVLTAELPDDPAIALADPIRCEQIFWNLMSNALKFTHAGGRIVVRLTHEAR-ML 1170

Query: 738  ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS- 796
             + V D G G+    L      F Q P  +     G G+GL L + +V+ + G+    S 
Sbjct: 1171 RVDVIDDGQGIDRDTLPHVFDMFRQAPRDRTR--GGLGIGLALVRQLVEMHDGRISAASD 1228

Query: 797  TPAKGTLIEIIFP 809
             P +GT + +  P
Sbjct: 1229 GPGRGTTMTVWLP 1241


>gi|254413294|ref|ZP_05027065.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196179914|gb|EDX74907.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 498

 Score =  338 bits (866), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 93/404 (23%), Positives = 168/404 (41%), Gaps = 19/404 (4%)

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
                        +     +  +    +   + E+   G+  +   G I+  N  + +L 
Sbjct: 94  HYTRLAAAVRAAWERSKQHQAFKEMQQRYQQLFESVPIGLYRMTPTGQIIEANPTLLQLL 153

Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
           GYP    L       + ++      + L +                   +  ++ +R   
Sbjct: 154 GYPSVQAL---LDTNISKHLVDTQANRLWQSQIDGEGVVRNLEIPMRRCDNTMIWVRYNA 210

Query: 546 KKLPFSSCYS----LTMHDISEWKQEKNKLSH-------AKKIAEKESSHKSDFLARVSH 594
           + +  S          + D+++ KQ + + +        A+  AE  +  K +FLA +SH
Sbjct: 211 RAIRNSQGEVMYYEGAIEDVTQRKQAETERTQLLKSEQAARAEAETANRLKDEFLATLSH 270

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           E+RTPL AI+G++ +++ ++  P    +       I+R+      +++DLLD+S+I  G 
Sbjct: 271 ELRTPLNAILGWAGLLRRKQLSP---DKVQRALEVIERNAKSQAQLIDDLLDVSRIIRGN 327

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714
           + L   PV L + ++ AI  +Q  A+ K I I +    +   I  D   ++QI  N+LSN
Sbjct: 328 LRLTVIPVDLQQIINAAIDTLQPAADAKSIQIDSFLEPSQTVIKGDSDRLQQIVWNLLSN 387

Query: 715 AIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           AI FTP+ GQ+ I      N  V +RV+DTG G++          F Q   S      G 
Sbjct: 388 AIKFTPTHGQVKIYLEWLENA-VQIRVQDTGKGVSVDIAPYIFDRFRQAEGSITRSHGGL 446

Query: 775 GLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFPLYDTSHPH 817
           GLGL + + +V+ + G  +  S    KG    +  PL   +   
Sbjct: 447 GLGLAIVRHLVELHGGTVWCESDGDGKGATFIVELPLKPQADAE 490



 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/255 (8%), Positives = 67/255 (26%), Gaps = 11/255 (4%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYA-FKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144
            + +   G + E +  L + +G  +   ++   +     ++    N      +  +    
Sbjct: 133 LYRMTPTGQIIEANPTLLQLLGYPSVQALLDTNISK--HLVDTQANRLWQSQIDGEGVVR 190

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
                      N  + +   A  I +   E   + G   +              +L K  
Sbjct: 191 NLEIPMRRC-DNTMIWVRYNARAIRNSQGEVMYYEG--AIEDVTQRKQAETERTQLLKSE 247

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD---DVLKTEKYPL 261
                  +  + ++ E     S +   P   +      L       D     L+  +   
Sbjct: 248 QAARAEAETANRLKDEFLATLSHELRTPLNAILGWAGLLRRKQLSPDKVQRALEVIERNA 307

Query: 262 LTSEESSLPEQEDFHTINLNQYT--KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
            +  +      +    I  N            + N + ++ +  +      + ++ +  +
Sbjct: 308 KSQAQLIDDLLDVSRIIRGNLRLTVIPVDLQQIINAAIDTLQPAADAKSIQIDSFLEPSQ 367

Query: 320 NLTPETVDKCPIPFF 334
            +     D+     +
Sbjct: 368 TVIKGDSDRLQQIVW 382


>gi|90423287|ref|YP_531657.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas
           palustris BisB18]
 gi|90105301|gb|ABD87338.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas
           palustris BisB18]
          Length = 612

 Score =  338 bits (866), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 119/393 (30%), Positives = 189/393 (48%), Gaps = 17/393 (4%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           R +   +  E  +   +    SD I+   R G +L  + A   L G PV  +L       
Sbjct: 192 RTSVALLYDEEDRYRLLARNMSDVISRHARNGAVLFVSPAAEPLLGVPVSRLLGHGLFDR 251

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK--------LLSLRIIIKKLP--- 549
           +           L++       +++E                    + L +  + L    
Sbjct: 252 VHVADRPAFLTALSDAGRGGEARSVEFRIRRDVPRGDRGRCNTADFIWLEMRCRPLEPSA 311

Query: 550 ----FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
                 +     M D+++ K+++  L  A+  AE+  + +S FLA +SHE+RTPL AIIG
Sbjct: 312 KNATSEAEVVAVMRDVTDRKEQEQALELARAAAERADASRSHFLATMSHELRTPLNAIIG 371

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
           FSE+I  +    +   R  EYA  I+ SG  +L +VN +LD+SK+ESGK  +  EP +  
Sbjct: 372 FSEMIVQEDVLMISAARRKEYAQLINDSGQHLLSVVNGILDMSKMESGKFEILPEPFAPR 431

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725
            A+    +L+ L A E  + + T    N+P++  D R+ KQI LN++SNAI FT  GG +
Sbjct: 432 PALLNCCNLLALKARENEVDLVTRAPENLPQLTGDPRAFKQIVLNLVSNAIKFTERGGTV 491

Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
            +S        + LRV DTGVG+   +L++  + F Q   S   R EGTGLGL + K++V
Sbjct: 492 TVSAAVE-GARLALRVSDTGVGIGADDLKRIGEAFFQASKSYHRRHEGTGLGLSIVKSLV 550

Query: 786 DANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
             + G+  + S   +GT + ++ PL  T  P D
Sbjct: 551 ALHGGEMSVESKLDEGTTVTVMLPLAFT-RPQD 582


>gi|170748577|ref|YP_001754837.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
 gi|170655099|gb|ACB24154.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 796

 Score =  338 bits (866), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 91/512 (17%), Positives = 188/512 (36%), Gaps = 23/512 (4%)

Query: 319 ENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
           +       +  P   ++    G + + N  +   T   S+D++   G  +          
Sbjct: 13  DADYRNLAETLPQLAWIAEADGTIIWYNQRWYDYTG-TSLDEMRGWGWRT---VHHPDHV 68

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
               +      +             ++    +            ++    +   G   + 
Sbjct: 69  AAVTERYRAAITLGRSWE---DTFPLRGRDGSYRWFLSKALPHRDESGRILRWYGTNTDI 125

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
              R  + ++     +  ++++A++  I   +  G ++      S   G   E      +
Sbjct: 126 TGRRAVEERLRHSEQRFRALVDASAAVIWNTDAAGELMPPQVRWSTYTGQTEEAYQGWGW 185

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---- 553
              +  +            +      T E        +    ++ +    +         
Sbjct: 186 LDAVHPDDRGHAADAWAACVEARA--TYEVEYRLRRYDGVWRAMEVRGVPVLAEDGSLRE 243

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
           +  T  D++E K+ +  +  A++ AE  +  KS F+A +SHE+RTPL+A+IG+SE +  +
Sbjct: 244 WVGTCVDVTERKEAEEAVERARQAAEAANRAKSQFIANMSHELRTPLSAVIGYSE-MLGE 302

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
               +G    +     I+ +   +L ++ND+LDISKIE+G+M    E  ++ + + +   
Sbjct: 303 ELEDIGQAALLPDLRKIEAAARHLLSLINDVLDISKIEAGRMTASAETFTVSDLLRDVSD 362

Query: 674 LVQLYANEKRILIRTSF----ANNIPRILADLRSVKQIALNILSNAIHFTPSGG-QIIIS 728
                  +K              ++  +  D   ++Q  LN++ NA  FT  G   + + 
Sbjct: 363 STGSLVEKKGNRFVLDTGAAGTADLGSMHQDQTKIRQCLLNLIGNAAKFTERGTITLTVR 422

Query: 729 TTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
                  + +   V DTG+G+T  ++ +  + F Q  +S   +  GTGLGL + +A    
Sbjct: 423 RHREEGADWLSFAVADTGIGLTEEQIGRLFERFVQADDSTTRQFGGTGLGLAITRAFCRT 482

Query: 788 NMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819
             G   + STP  G    I  P   T  P D 
Sbjct: 483 MGGDIGVASTPGAGATFTIRLPA--TLRPEDA 512



 Score = 86.6 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/262 (10%), Positives = 64/262 (24%), Gaps = 14/262 (5%)

Query: 67  YLDSENTFVFDPIPRTV-----RFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV 121
             +S    V D   R +     +  W  +A G +   ++      G    +M G     V
Sbjct: 3   ETESGPGSVTDADYRNLAETLPQLAWIAEADGTIIWYNQRWYDYTGTSLDEMRGWGWRTV 62

Query: 122 SDILHIDPNNHI-GDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRG 180
               H+          +    +W     L   +G+  Y      ALP    +      R 
Sbjct: 63  HHPDHVAAVTERYRAAITLGRSWEDTFPLRGRDGS--YRWFLSKALPHRDESGRI--LRW 118

Query: 181 FGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ----SPPPHLRM 236
           +G               +  +++F  L +             ++   Q    +       
Sbjct: 119 YGTNTDITGRRAVEERLRHSEQRFRALVDASAAVIWNTDAAGELMPPQVRWSTYTGQTEE 178

Query: 237 KNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS 296
             +     +     D     + +       ++   +      +      +     +    
Sbjct: 179 AYQGWGWLDAVHPDDRGHAADAWAACVEARATYEVEYRLRRYDGVWRAMEVRGVPVLAED 238

Query: 297 KESFEYLSHRNHPSLSAYFDEG 318
               E++      +     +E 
Sbjct: 239 GSLREWVGTCVDVTERKEAEEA 260


>gi|56479368|ref|YP_160957.1| two-component hybrid sensor kinase/response regulator [Aromatoleum
           aromaticum EbN1]
 gi|56315411|emb|CAI10056.1| Two-component regulatory system protein containing hybrid kinase
           and response regulator domains [Aromatoleum aromaticum
           EbN1]
          Length = 1015

 Score =  338 bits (866), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 132/678 (19%), Positives = 224/678 (33%), Gaps = 58/678 (8%)

Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE 245
            +R+    R L   +             H               P     +    S L  
Sbjct: 180 DSRLVAISRLLAVAVGGVALVAVVGLTFHFVRLNLAIPSVGIALPVALALLITSFSLLLR 239

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
               +   L     P        LP       +        Q FG       E    ++ 
Sbjct: 240 NPPPRFIQLLEHDSPGAVIFRRLLPVAIAVPLLAGWLQALGQRFGWFGVIEGEGVVAVAM 299

Query: 306 -------------------RNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYAN 345
                               +        +  +     T+         V +   + + N
Sbjct: 300 IVACTVLILWTAARLDEMNTDRSIAEIRANTQQQWLEVTLATIEDAVITVNNEMRVGFLN 359

Query: 346 PSFLLLTKYKSVDDIEIA---------GGLSTLLDAPKLSDNNAIKPVM------LYRSD 390
           P+   L   K  D I                  + +P     + +  V       L   D
Sbjct: 360 PAAETLLDVKVGDAIGRDLQELVVLVDEATDQPMGSPFARAFSELGQVTISGEPGLRMRD 419

Query: 391 RTCIAASARLHTIQ-WNRE---NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
            +  A  A    I+ W        L +      +A +  +      ++    D      +
Sbjct: 420 GSVRAVEATATPIRDWKGGINGGVLVLRDARAHRAREHADRQAYAALDRRVGDRTRALER 479

Query: 447 ----MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL- 501
               +      L +I  +T + I   +REG I+  N A  +  G     ++         
Sbjct: 480 TMSVLRESTTLLRTIAASTPELIVAKSREGRIMMVNPAALQAMGLSRAQVVGHKEESLFG 539

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMH 559
                  +      ++       +E  +  +    +   +     +              
Sbjct: 540 SSEEMRRILENDRRVIETRRPIVVE-ESRTTRAGTRTFLVTKSPLRDSQGHVFGLVGVSK 598

Query: 560 DISEWKQEKNKL-------SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
           DI+E K+ + +L          +  AE+ +  K +FLA VSHE+R+PL A+ G+S+V+  
Sbjct: 599 DITERKRAQRELEQLLVAEHRLRGEAERANRAKDEFLAIVSHELRSPLNALKGWSQVL-- 656

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
              G       +  A  I R+ +    +++DLLD S+I SGK+ L+   V+L E V  AI
Sbjct: 657 TASGNPEPATVLRAAEAIKRNIDHQARLIDDLLDTSRIISGKLELNSRRVNLVEIVHAAI 716

Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
            L    A  KRI +R   A     I  D   ++QI +N+L+NA+ FTP GG + +     
Sbjct: 717 DLSWDTAKAKRIELRVDTACPSLMINGDHDRLQQIVINLLANALKFTPEGGWVELRLA-Q 775

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
               VIL V D+GVG+    L      F Q   S   R +G G+GL L + +V+ + G  
Sbjct: 776 GETSVILSVADSGVGIEAGFLPHVFDRFSQADTSMTRRHQGLGIGLALVRNLVELHGGAV 835

Query: 793 YIFST-PAKGTLIEIIFP 809
            + S  P  G++  +  P
Sbjct: 836 RVESAGPGCGSVFTVELP 853



 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 46/398 (11%), Positives = 101/398 (25%), Gaps = 53/398 (13%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR------QNT 142
           ++    +  ++      +       IG  L ++  ++    +  +G    R      Q T
Sbjct: 349 VNNEMRVGFLNPAAETLLDVKVGDAIGRDLQELVVLVDEATDQPMGSPFARAFSELGQVT 408

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR----ALGK 198
             G+  L   +G+     ++  A PI       +G  G  ++   R              
Sbjct: 409 ISGEPGLRMRDGS--VRAVEATATPIRDWKGGING--GVLVLRDARAHRAREHADRQAYA 464

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP------------------------PPHL 234
            LD++        +   SV +E   +    +                            L
Sbjct: 465 ALDRRVGDRTRALERTMSVLRESTTLLRTIAASTPELIVAKSREGRIMMVNPAALQAMGL 524

Query: 235 RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP-EQEDFHTINLNQYTKKQYFGTLQ 293
                V    E      + ++          E+  P   E+  T      T       L+
Sbjct: 525 SRAQVVGHKEESLFGSSEEMRRILENDRRVIETRRPIVVEESRTTRAGTRTFLVTKSPLR 584

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPS---FLL 350
           ++    F  +      +                 +          G    AN +   FL 
Sbjct: 585 DSQGHVFGLVGVSKDITERKRAQRELEQLLVAEHRL--------RGEAERANRAKDEFLA 636

Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
           +  ++    +    G S +L A           +    + +  I   ARL     +    
Sbjct: 637 IVSHELRSPLNALKGWSQVLTASGNP--EPATVLRAAEAIKRNIDHQARLIDDLLDTSRI 694

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
           ++       +     E +        D   +  + ++ 
Sbjct: 695 ISGKLELNSRRVNLVEIVHAAIDLSWDTA-KAKRIELR 731



 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/255 (11%), Positives = 72/255 (28%), Gaps = 13/255 (5%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDV--SDILHIDPNNHIGDLLKRQNTWYGKTT 148
             G +  ++    + +G    +++G +   +  S         +   +++ +     + +
Sbjct: 507 REGRIMMVNPAALQAMGLSRAQVVGHKEESLFGSSEEMRRILENDRRVIETRRPIVVEES 566

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                GT  ++   +   P+            FG+V V++   + +   + L++     H
Sbjct: 567 RTTRAGTRTFL---VTKSPLRDSQGHV-----FGLVGVSKDITERKRAQRELEQLLVAEH 618

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
            ++       + K +  +  S      +                        L  +E   
Sbjct: 619 RLRGEAERANRAKDEFLAIVSHELRSPLNALKG---WSQVLTASGNPEPATVLRAAEAIK 675

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
                    I+    T +   G L+ NS+             LS    + + +       
Sbjct: 676 RNIDHQARLIDDLLDTSRIISGKLELNSRRVNLVEIVHAAIDLSWDTAKAKRIELRVDTA 735

Query: 329 CPIPFFVYSHGNLFY 343
           CP       H  L  
Sbjct: 736 CPSLMINGDHDRLQQ 750


>gi|325108211|ref|YP_004269279.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
           5305]
 gi|324968479|gb|ADY59257.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
           5305]
          Length = 797

 Score =  338 bits (866), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 114/454 (25%), Positives = 200/454 (44%), Gaps = 52/454 (11%)

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469
             ++    F        +  +   E      +    + +    +   I E+   GI  ++
Sbjct: 191 IFSLVLHTFRIRTFSRMSELRICDEMRAEKLKEAVSQSQENENKFRRISESVPFGIFQVD 250

Query: 470 REGIILSTN---RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
            +G    +N   R+     G    +     +   L  +          + ++     T  
Sbjct: 251 TDGFCGYSNNIYRSFCMSAGVTRIE---HRWVEILPADVREQTQQQWAQAVADFTSFTGV 307

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK------------------ 568
            +T   + E++ L + I        + +  T+ DI+E K                     
Sbjct: 308 YLTQTVSGEQRWLEILISPVFSDDGAVFVGTIEDITEKKLAHDQLGKTADDLRISKEQLE 367

Query: 569 ----------NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
                      +L  AK+ AE+ +  KS+FLA +SHEIRTP+TAI+G+++V+ ++     
Sbjct: 368 KNSRRLQDVVEQLEVAKERAEQSARSKSEFLANMSHEIRTPMTAILGYTDVLLHEV---A 424

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
            NP + +    I R+G  +L I+ND+LDISKIE+GKM +   P S  + +++  +L+ + 
Sbjct: 425 DNPHFQDSLTTIKRNGEHLLQIINDILDISKIEAGKMEVEIIPTSPTQLIADVYTLMAVR 484

Query: 679 ANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS---- 733
           A EK + +   FA+ +P  I  D   ++QI LN++SNAI FT  GG + I          
Sbjct: 485 AQEKDVELSYEFASRLPHTIQTDPTRLRQILLNLVSNAIKFTDKGG-VRIRAAIEQGLPG 543

Query: 734 --NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
             +  + + V+D+G+GM++ +  K  +PF Q   S   R  GTGLGL +++ +     GK
Sbjct: 544 QTDPRLAIYVQDSGIGMSDEQKAKLFQPFTQADTSMSRRFGGTGLGLTISQRLAQKLGGK 603

Query: 792 FYIFSTPAKGTLIEIIF------PLYDTSHPHDC 819
             + S P KG+   +        P+ D  HP +C
Sbjct: 604 ISVESMPGKGSTFCVSIATQVVCPI-DGGHPCNC 636


>gi|217037911|gb|ACJ76427.1| hybrid sensor kinase RscS [Aliivibrio fischeri]
          Length = 943

 Score =  338 bits (866), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 102/381 (26%), Positives = 180/381 (47%), Gaps = 13/381 (3%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +    + E E  +L  + E   D I I++++  +   N++ S L G  +EDI  K     
Sbjct: 264 KRELIRSEKEKTKLALVAEYAHDAIFILDKQSKLTWINQSYSVLSGNTLEDIKGKDLPSV 323

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSL 556
           L+        +  T + SL    ++      + K+  L  + + +  +   +     Y +
Sbjct: 324 LQ-LDKIQHANIFTLLQSLKTGTSVSFELTNNHKDGTLYWIDVSVTPIFKPNGNIMHYVV 382

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
              DI++ K+ ++KL  A   A+  +  KS FLA +SHE+RTPL  I+G +++I++    
Sbjct: 383 VERDITKKKELEDKLIKAADKADVSNKAKSTFLATMSHELRTPLNGILGMAQIIESN--- 439

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
            + +    +    +  SG+ +L ++ND+LD SKIE  K+ L+      ++ +    +   
Sbjct: 440 -IKDEEQHKQIKVLLESGDHLLSLLNDILDFSKIEQNKLELNHASFYFNDVIDPIANTYL 498

Query: 677 LYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSN 734
               +K +    +   N   I L D   ++QI  N++SNA+ FT  G   +  S T T  
Sbjct: 499 SICEDKGLQFIINNNINEKTIFLGDKPRIRQIIFNLISNAVKFTHKGSITLNFSHTLTPK 558

Query: 735 EE--VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
            E  V ++V+DTG+G+    L+   +PF Q   S   +  GTGLGL + K + D   G  
Sbjct: 559 GEQAVQIKVQDTGIGIRKKRLKHIFEPFIQAETSTTRQYGGTGLGLTIVKQLTDTMKGYI 618

Query: 793 YIFSTPAKGTLIEIIFPLYDT 813
            + S+  KGT   ++ PL  T
Sbjct: 619 SVNSSEGKGTCFTLVLPLEIT 639



 Score = 44.2 bits (103), Expect = 0.081,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 43/142 (30%), Gaps = 6/142 (4%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL--LKRQNTW 143
            + +D    L  I++      GN    + G  L  V  +  I   N    L  LK   + 
Sbjct: 288 IFILDKQSKLTWINQSYSVLSGNTLEDIKGKDLPSVLQLDKIQHANIFTLLQSLKTGTSV 347

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             + T    +GT     ID++  PI+  N     +    +        +      +   K
Sbjct: 348 SFELTNNHKDGTLY--WIDVSVTPIFKPNGNIMHY--VVVERDITKKKELEDKLIKAADK 403

Query: 204 FSHLHEIKKGHSSVEKEKYDIF 225
               ++ K    +    +    
Sbjct: 404 ADVSNKAKSTFLATMSHELRTP 425


>gi|46579974|ref|YP_010782.1| sensory box histidine kinase/response regulator [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|46449390|gb|AAS96041.1| sensory box histidine kinase/response regulator [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|311234028|gb|ADP86882.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris RCH1]
          Length = 1039

 Score =  338 bits (866), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 111/676 (16%), Positives = 209/676 (30%), Gaps = 28/676 (4%)

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
           W          G N  + +  A        R F     F + +           G     
Sbjct: 226 WEELGRRLQRVGANDAILLLSAYKDQRGVVRNFEEGLAFILQNTRSPVYHLWEHGMGKGL 285

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
               L    +           I +  SP     ++   ++   +            + + 
Sbjct: 286 LGGKLISHYEQGRLAADMALKILAGASPASLPVIEGNDANAYLFDYEVLRRHGISTHRIP 345

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
                    +  +            +   L        +++               E   
Sbjct: 346 QGSRVINEPESIWRDYWRELLVAVAFVAVLCVLVVVLLKHVLRLREARTE--IKRSETRY 403

Query: 323 PETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
               D+ P+    Y   G +   N  F  L        I          +      +  +
Sbjct: 404 RLVFDQSPLGLVQYDGDGIIIDVNERFAELCGASRGQIIG--------FNYINQMHDARM 455

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
              +L               +     + +  +  +         +     GI  +  D +
Sbjct: 456 LGAVLASLRGGIGGFEGVYTSPL--GKKTAFIRCLFKGVKAPAGDVFIGIGIIEDVSDRK 513

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK-PFTVF 500
             +  +    + L         G    N     L  +  V+++   P +       +   
Sbjct: 514 QAEEALRERELFLLETQRIAKIGGWKANIRTDYLFWSEEVNRILDLPEDYKPGLAEWLTS 573

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT--M 558
                   +   L ++L       +E   +      K   LR  + ++   S   +    
Sbjct: 574 FMPEYLPRIRAMLEDVLHHGGTADIECEAMTRLGRRKWTHLR-AVGRVDEGSGALVVGTF 632

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            D+ E K+ + +L  AK  A   +  K +FLA +SHEIRTPL  I G   ++ +    P 
Sbjct: 633 QDVDERKRTELELVEAKTKAVAANRAKDEFLANMSHEIRTPLNGIFGMLRMLADASLAP- 691

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
              R  E A    RS   + D++ D+LDIS+I++GK+ +   P  L  ++ +   L    
Sbjct: 692 ---RQQELAEMAMRSCRRLADLLTDVLDISRIDAGKLEIVSIPFDLSRSIRQVRELFIPS 748

Query: 679 ANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-----T 732
           A +  + +       IP R++ D   ++Q+  N+L NA  FT  G  + +   H      
Sbjct: 749 AMQAGVSLHVHIDAAIPSRVVGDASRLQQVLTNLLGNAFKFTEKGS-VTLRAEHLSPVLA 807

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
           ++  V+  V DTG G+ + +  K   PF Q     +   +G GLGL + + ++    G  
Sbjct: 808 NSCRVLFSVEDTGCGIPDEKHGKLFTPFTQACEGFKRSHQGAGLGLSICRRIIRVMGGHL 867

Query: 793 YIFSTPAKGTLIEIIF 808
              S    GT +    
Sbjct: 868 AFESEAGTGTTVYFTL 883



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 46/364 (12%), Positives = 92/364 (25%), Gaps = 15/364 (4%)

Query: 65  TNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI 124
           T    SE  +        +      D  G + +++E   +  G    ++IG     ++ +
Sbjct: 394 TEIKRSETRYRLVFDQSPLGLV-QYDGDGIIIDVNERFAELCGASRGQIIG--FNYINQM 450

Query: 125 LHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIV 184
                   +   L+     +      P+     ++        + +   +   F G GI+
Sbjct: 451 HDARMLGAVLASLRGGIGGFEGVYTSPLGKKTAFIRCLFKG--VKAPAGDV--FIGIGII 506

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244
                        +  +        I K        + D           R+ +      
Sbjct: 507 EDVSDRKQAEEALRERELFLLETQRIAKIGGWKANIRTDYLFWSE--EVNRILDLPEDYK 564

Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
              A        E  P + +    +        I     T+          +    +  S
Sbjct: 565 PGLAEWLTSFMPEYLPRIRAMLEDVLHHGGTADIECEAMTRLGRRKWTHLRAVGRVDEGS 624

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364
                      DE +    E V+            + F AN S  + T       +    
Sbjct: 625 GALVVGTFQDVDERKRTELELVEAKTKAVAANRAKDEFLANMSHEIRTP------LNGIF 678

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
           G+  +L    L+        M  RS R        +  I       L +  IPF+ +   
Sbjct: 679 GMLRMLADASLAPRQQELAEMAMRSCRRLADLLTDVLDISRIDAGKLEIVSIPFDLSRSI 738

Query: 425 PENM 428
            +  
Sbjct: 739 RQVR 742


>gi|17230767|ref|NP_487315.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17132370|dbj|BAB74974.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 889

 Score =  338 bits (866), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 95/384 (24%), Positives = 174/384 (45%), Gaps = 23/384 (5%)

Query: 439 DTRINKRKMEIEVMQLCS----ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
           ++   K ++      L S    IL + +D    +NR+  I   N   +K+     ED++ 
Sbjct: 361 ESHREKDELLQREQALRSRLSNILSSMTDAFIAVNRDWDITYCNHQAAKIQDLEPEDLIG 420

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554
           K +     +   +         L+ ++   +    L    +   + L +           
Sbjct: 421 KNYWEQWTRTKGTDFEREYRRSLAENIP--VHFEILYELWD---MWLEVHAYPSEDGLGI 475

Query: 555 SLTMHDISEWKQEKNKLSH-------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
                +I+E KQ + +  +       A+  AE+ +  K DFLA +SHE+RTPL  I+G++
Sbjct: 476 F--FRNITERKQAEQEREYLLMREQIARGEAERANRLKDDFLAVLSHELRTPLNPILGWA 533

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
            ++K +    L           I+R+  L + ++ DLLD+S+I+ GK++L+ + V+L   
Sbjct: 534 TLLKKRN---LEEATRRRGIETIERNAKLQIQLIEDLLDVSRIQQGKLSLNIQSVNLVHT 590

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727
           + EA+  V+L    K I I+T+   N+  +  D   ++QI  N+L+NAI FTP  GQI +
Sbjct: 591 IEEALETVRLAIEAKSIHIKTALGVNVGMVAGDAARLQQIIWNLLANAIKFTPPAGQIQV 650

Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
                 N    ++++D G G+++  L    + F Q   +   +  G GLGL + K + + 
Sbjct: 651 VLERV-NNSAQIQIQDNGKGISSEFLPYVFEYFRQADGTITRQFGGLGLGLAIVKHLTEL 709

Query: 788 NMGKFYIFST-PAKGTLIEIIFPL 810
           + G     S     G +  +  PL
Sbjct: 710 HGGTVKAESAGEGMGAIFTVNLPL 733


>gi|300023813|ref|YP_003756424.1| multi-sensor signal transduction histidine kinase [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299525634|gb|ADJ24103.1| multi-sensor signal transduction histidine kinase [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 836

 Score =  338 bits (866), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 116/639 (18%), Positives = 246/639 (38%), Gaps = 21/639 (3%)

Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE 245
                 D  A   R  +    L         +      +    +             + E
Sbjct: 201 EIARIEDQHATLARDIRSSRALLNTLPMPVWLRGVDNRLIWVNAAYVQAVDAKSEIEVLE 260

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
           +     +  + +      +  +    +   H ++  +    +    L  +   +   +  
Sbjct: 261 HQIELLEGRQRKSV--SRALAAGQTYRSRIHLVSGGERKAHEVV-VLPVDGMTAGAAVDV 317

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAG 364
            +  S     +   +    T+D+      ++S  + L + N +F  L    + D +    
Sbjct: 318 TDIESAQGELERQSSAYDRTLDRVETAVAIFSPDHKLAFYNAAFAKLWSLDT-DWLASNP 376

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
             + +LD  +L +   ++PV+ +R  +      A   T     +              + 
Sbjct: 377 SDNVILD--RLREIGVLEPVVNHRDWKAQ--VLACYQTGTPFDDTWNLTDGRILHVMAEQ 432

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
             +     +  ++ +    + +    +      L +  +G+A+    G +   N+A   +
Sbjct: 433 RPDGGVTFLFADETERLSLESRYNALIDVQRETLNSLKEGVAVFGTNGRLKLFNKAFCNI 492

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMN--HYLTEILSLDLRQTLEKITLGS--TKEEKLLS 540
           +    + +   P    +     ++         I         E+ T     T+++ ++ 
Sbjct: 493 WHMQQKRLAELPHVGEVIAAAQTLHPNNDTWRRIGHAVTAFLDERETFSGQMTRDDGVV- 551

Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
           +   +  LP  +   +T  D+++ K+ +  L    +        K++F+  +S+E+RTPL
Sbjct: 552 VDYALMPLPDGA-TLMTFADVTDAKRAERALVERNEALVAADRLKTNFIGHISYELRTPL 610

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
            +IIGFSE++ +  FG L N +  EY   I  S   +L I+ND+LD++ I++G M L   
Sbjct: 611 NSIIGFSEMLASPLFGDL-NAKQREYLADIMSSSKTLLAIINDILDLATIDAGAMQLKPT 669

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720
           PV +   +  AI  ++  A   R+ I  + A+ +   +AD   ++Q+  N+LSNA+ F+ 
Sbjct: 670 PVGVRALIDAAILGIRERAVRNRLTIEIAVADEVNEFVADEARMRQVLYNLLSNAVGFSK 729

Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG-QIPNSQQIRGEGTGLGLP 779
             G + +    + N  +I RV D GVG+    + +    F  Q   S      G GLGL 
Sbjct: 730 VNGTVRL-ACWSENGTIIFRVEDDGVGIPKDRIGRIFDRFESQSHGSDHR---GAGLGLS 785

Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
           + K++V+ + G   +FS   +GT + +  P +  +   D
Sbjct: 786 IVKSLVELHGGTIEVFSEENRGTRVTVRLPEHPVTPAGD 824



 Score = 39.6 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 28/347 (8%), Positives = 79/347 (22%), Gaps = 27/347 (7%)

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN-SKESFEYLSHRNHPSLSAY 314
                   +         DF    L           +       S      R   S S +
Sbjct: 29  ATMLAGFVNGHGIGSVDFDFRHTWLFLTVAVGALAAIAVIWRMGSMARREARAAKSESVH 88

Query: 315 FDEGENLTPETVDKCPIPFFVYSHG---NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
                      +   P     +  G    +     + +        + +     L +   
Sbjct: 89  LRRNLAAADAIIRAEPQVLVFWEQGQAVRIVSHTLASVPGLPEHHAEILRFGQWLES--- 145

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
                         L  +             I       +                   +
Sbjct: 146 ---------TSAHSLKAALDKLFVNGRSFSIILKTIAGGIIEAEGRAAGGRAVLRLKEVS 196

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
           G + E          +  ++    ++L      + +   +  ++  N A  +      E 
Sbjct: 197 GYKLEIARIEDQHATLARDIRSSRALLNTLPMPVWLRGVDNRLIWVNAAYVQAVDAKSEI 256

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
            + +     LE      ++     + +    ++   +  G  ++   + +      LP  
Sbjct: 257 EVLEHQIELLEGRQRKSVS---RALAAGQTYRSRIHLVSGGERKAHEVVV------LPVD 307

Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS--HEI 596
              +    D+++ +  + +L       ++        +A  S  H++
Sbjct: 308 GMTAGAAVDVTDIESAQGELERQSSAYDRTLDRVETAVAIFSPDHKL 354


>gi|187778877|ref|ZP_02995350.1| hypothetical protein CLOSPO_02472 [Clostridium sporogenes ATCC
           15579]
 gi|187772502|gb|EDU36304.1| hypothetical protein CLOSPO_02472 [Clostridium sporogenes ATCC
           15579]
          Length = 569

 Score =  338 bits (866), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 94/391 (24%), Positives = 172/391 (43%), Gaps = 31/391 (7%)

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
            ++            + ++  +   ++  +  +L +IL++   G+  I++E  ++  N  
Sbjct: 208 EDEIGRLGITFNAMADILENSLV--EVRDKQNRLEAILKSMDSGVVAIDKEFKVIMINPY 265

Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
            +KLFG    DI+ +     +           L  +L        E   L   K    + 
Sbjct: 266 ANKLFGIKR-DIIGENLMDNIRDFE-------LERVLKDKEPGYKEINILWPEKRTLRIK 317

Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
              II K   +      + DI++ K+ +              + +  F+A VSHE++TPL
Sbjct: 318 TTDIISKY-DNIGTVAVVQDITDIKKLE--------------NMREQFVANVSHELKTPL 362

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
           T+I GFSE +K             ++   I+   + +  ++ND+L +S IE  K  L  E
Sbjct: 363 TSIKGFSETLK----YVEDKKNREKFLQIINDEADRLTRLINDILVLSNIEKQKQELIKE 418

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720
            + L+E + +   LV+  A +K I I       +P ++ +     Q+ +N++ NAI +T 
Sbjct: 419 EIDLNELIEKVYCLVKKSAEDKNIKINI-VGGKVPLLIGNKDKYNQMIINLIDNAIKYTE 477

Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
             G++ I T     + +I  V DTGVG++   L++  + F ++  ++     GTGLGL +
Sbjct: 478 PNGEVNIGTR-QDKDNIIFWVEDTGVGISKEHLDRIFERFYRVDKARSRAEGGTGLGLAI 536

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
            K +V    GK  + S P KGT   +  PL 
Sbjct: 537 VKHIVLGINGKIEVKSEPKKGTKFIVKIPLS 567


>gi|227518448|ref|ZP_03948497.1| histidine kinase [Enterococcus faecalis TX0104]
 gi|229546128|ref|ZP_04434853.1| histidine kinase [Enterococcus faecalis TX1322]
 gi|229550317|ref|ZP_04439042.1| histidine kinase [Enterococcus faecalis ATCC 29200]
 gi|255973089|ref|ZP_05423675.1| sensory box histidine kinase VicK [Enterococcus faecalis T1]
 gi|255976128|ref|ZP_05426714.1| sensory box histidine kinase VicK [Enterococcus faecalis T2]
 gi|256618777|ref|ZP_05475623.1| hypothetical protein EFDG_00205 [Enterococcus faecalis ATCC 4200]
 gi|256762197|ref|ZP_05502777.1| sensory box histidine kinase VicK [Enterococcus faecalis T3]
 gi|256852842|ref|ZP_05558212.1| VicK protein [Enterococcus faecalis T8]
 gi|256958686|ref|ZP_05562857.1| PAS [Enterococcus faecalis DS5]
 gi|256962216|ref|ZP_05566387.1| PAS [Enterococcus faecalis Merz96]
 gi|256965406|ref|ZP_05569577.1| PAS [Enterococcus faecalis HIP11704]
 gi|257077960|ref|ZP_05572321.1| PAS [Enterococcus faecalis JH1]
 gi|257082849|ref|ZP_05577210.1| sensory box histidine kinase VicK [Enterococcus faecalis E1Sol]
 gi|257085547|ref|ZP_05579908.1| sensory box histidine kinase [Enterococcus faecalis Fly1]
 gi|257086547|ref|ZP_05580908.1| PAS/PAC sensor signal transduction histidine kinase [Enterococcus
           faecalis D6]
 gi|257089604|ref|ZP_05583965.1| two component system sensor histidine kinase vicK [Enterococcus
           faecalis CH188]
 gi|257415811|ref|ZP_05592805.1| PAS [Enterococcus faecalis AR01/DG]
 gi|257422895|ref|ZP_05599885.1| two component system sensor histidine kinase vicK [Enterococcus
           faecalis X98]
 gi|293383243|ref|ZP_06629159.1| sensory box histidine kinase VicK [Enterococcus faecalis R712]
 gi|293387602|ref|ZP_06632148.1| sensory box histidine kinase VicK [Enterococcus faecalis S613]
 gi|294781109|ref|ZP_06746459.1| PAS domain S-box [Enterococcus faecalis PC1.1]
 gi|300860119|ref|ZP_07106207.1| PAS domain S-box protein [Enterococcus faecalis TUSoD Ef11]
 gi|307273519|ref|ZP_07554762.1| PAS domain S-box [Enterococcus faecalis TX0855]
 gi|307274482|ref|ZP_07555665.1| PAS domain S-box [Enterococcus faecalis TX2134]
 gi|307279012|ref|ZP_07560070.1| PAS domain S-box [Enterococcus faecalis TX0860]
 gi|307288505|ref|ZP_07568491.1| PAS domain S-box [Enterococcus faecalis TX0109]
 gi|307291177|ref|ZP_07571062.1| PAS domain S-box [Enterococcus faecalis TX0411]
 gi|312903944|ref|ZP_07763113.1| PAS domain S-box [Enterococcus faecalis TX0635]
 gi|312907169|ref|ZP_07766160.1| PAS domain S-box [Enterococcus faecalis DAPTO 512]
 gi|312909788|ref|ZP_07768636.1| PAS domain S-box [Enterococcus faecalis DAPTO 516]
 gi|312951045|ref|ZP_07769953.1| PAS domain S-box [Enterococcus faecalis TX0102]
 gi|227074126|gb|EEI12089.1| histidine kinase [Enterococcus faecalis TX0104]
 gi|229304580|gb|EEN70576.1| histidine kinase [Enterococcus faecalis ATCC 29200]
 gi|229308652|gb|EEN74639.1| histidine kinase [Enterococcus faecalis TX1322]
 gi|255964107|gb|EET96583.1| sensory box histidine kinase VicK [Enterococcus faecalis T1]
 gi|255969000|gb|EET99622.1| sensory box histidine kinase VicK [Enterococcus faecalis T2]
 gi|256598304|gb|EEU17480.1| hypothetical protein EFDG_00205 [Enterococcus faecalis ATCC 4200]
 gi|256683448|gb|EEU23143.1| sensory box histidine kinase VicK [Enterococcus faecalis T3]
 gi|256711301|gb|EEU26339.1| VicK protein [Enterococcus faecalis T8]
 gi|256949182|gb|EEU65814.1| PAS [Enterococcus faecalis DS5]
 gi|256952712|gb|EEU69344.1| PAS [Enterococcus faecalis Merz96]
 gi|256955902|gb|EEU72534.1| PAS [Enterococcus faecalis HIP11704]
 gi|256985990|gb|EEU73292.1| PAS [Enterococcus faecalis JH1]
 gi|256990879|gb|EEU78181.1| sensory box histidine kinase VicK [Enterococcus faecalis E1Sol]
 gi|256993577|gb|EEU80879.1| sensory box histidine kinase [Enterococcus faecalis Fly1]
 gi|256994577|gb|EEU81879.1| PAS/PAC sensor signal transduction histidine kinase [Enterococcus
           faecalis D6]
 gi|256998416|gb|EEU84936.1| two component system sensor histidine kinase vicK [Enterococcus
           faecalis CH188]
 gi|257157639|gb|EEU87599.1| PAS [Enterococcus faecalis ARO1/DG]
 gi|257164719|gb|EEU94679.1| two component system sensor histidine kinase vicK [Enterococcus
           faecalis X98]
 gi|291079421|gb|EFE16785.1| sensory box histidine kinase VicK [Enterococcus faecalis R712]
 gi|291082934|gb|EFE19897.1| sensory box histidine kinase VicK [Enterococcus faecalis S613]
 gi|294451787|gb|EFG20239.1| PAS domain S-box [Enterococcus faecalis PC1.1]
 gi|300850937|gb|EFK78686.1| PAS domain S-box protein [Enterococcus faecalis TUSoD Ef11]
 gi|306497831|gb|EFM67363.1| PAS domain S-box [Enterococcus faecalis TX0411]
 gi|306500580|gb|EFM69911.1| PAS domain S-box [Enterococcus faecalis TX0109]
 gi|306504137|gb|EFM73349.1| PAS domain S-box [Enterococcus faecalis TX0860]
 gi|306508876|gb|EFM77963.1| PAS domain S-box [Enterococcus faecalis TX2134]
 gi|306509796|gb|EFM78823.1| PAS domain S-box [Enterococcus faecalis TX0855]
 gi|310626197|gb|EFQ09480.1| PAS domain S-box [Enterococcus faecalis DAPTO 512]
 gi|310631000|gb|EFQ14283.1| PAS domain S-box [Enterococcus faecalis TX0102]
 gi|310632664|gb|EFQ15947.1| PAS domain S-box [Enterococcus faecalis TX0635]
 gi|311289746|gb|EFQ68302.1| PAS domain S-box [Enterococcus faecalis DAPTO 516]
 gi|315027747|gb|EFT39679.1| PAS domain S-box [Enterococcus faecalis TX2137]
 gi|315031522|gb|EFT43454.1| PAS domain S-box [Enterococcus faecalis TX0017]
 gi|315035062|gb|EFT46994.1| PAS domain S-box [Enterococcus faecalis TX0027]
 gi|315147676|gb|EFT91692.1| PAS domain S-box [Enterococcus faecalis TX4244]
 gi|315151378|gb|EFT95394.1| PAS domain S-box [Enterococcus faecalis TX0012]
 gi|315154082|gb|EFT98098.1| PAS domain S-box [Enterococcus faecalis TX0031]
 gi|315157369|gb|EFU01386.1| PAS domain S-box [Enterococcus faecalis TX0043]
 gi|315158432|gb|EFU02449.1| PAS domain S-box [Enterococcus faecalis TX0312]
 gi|315165411|gb|EFU09428.1| PAS domain S-box [Enterococcus faecalis TX1302]
 gi|315166595|gb|EFU10612.1| PAS domain S-box [Enterococcus faecalis TX1341]
 gi|315169876|gb|EFU13893.1| PAS domain S-box [Enterococcus faecalis TX1342]
 gi|315172773|gb|EFU16790.1| PAS domain S-box [Enterococcus faecalis TX1346]
 gi|315578293|gb|EFU90484.1| PAS domain S-box [Enterococcus faecalis TX0630]
 gi|323480427|gb|ADX79866.1| histidine sensor kinase [Enterococcus faecalis 62]
 gi|327534819|gb|AEA93653.1| sensor histidine kinase [Enterococcus faecalis OG1RF]
          Length = 609

 Score =  338 bits (866), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 84/418 (20%), Positives = 181/418 (43%), Gaps = 29/418 (6%)

Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
              R   I+  R +      +     ++  +         E ++    +  ME E  +L 
Sbjct: 207 GEMREQAIRIARGDYAG--KVEVHGKDELGQLAETFNQLSERIEE--AQETMEAERNRLD 262

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           S+L   +DG+   +R G +++ N     L     E+++       L+          L +
Sbjct: 263 SVLTHMTDGVIATDRRGKVITINEMALSLLNVKNENVIGTSLLELLDIEEDYT----LRK 318

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSH 573
           +L       +++ T    +++ ++ +   + +      +     +HD++E ++ + +   
Sbjct: 319 LLEEPDELLIDRSTSDREEDQMIIRVDFTMIRRESGFITGLVCVLHDVTEQEKNERE--- 375

Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
                      + +F++ VSHE+RTPLT++  + E +    +          +       
Sbjct: 376 -----------RREFVSNVSHELRTPLTSMRSYIEALSEGAW--ENPEIAPNFLKVTLEE 422

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN--EKRILIRTSFA 691
            + ++ ++NDLL++S+++SG  +L  E V+ +E ++  +    +     +K   IR  F 
Sbjct: 423 TDRMIRMINDLLNLSRMDSGNTHLQLEYVNFNELINFVLDRFDMMIENEQKNYKIRREFT 482

Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751
                +  D   V Q+  NIL+NAI ++P GG I       ++  V+  + D G+G+   
Sbjct: 483 KRDLWVELDTDKVIQVLDNILNNAIKYSPDGGVITCRL-VETHNNVVFSISDQGLGIPKK 541

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +L K  + F ++  ++     GTGLGL ++K ++ A+ G  ++ ST  +G+   I  P
Sbjct: 542 DLGKVFERFYRVDKARARAQGGTGLGLAISKEVIRAHNGSIWVESTEGEGSTFYISLP 599



 Score = 37.7 bits (86), Expect = 7.9,   Method: Composition-based stats.
 Identities = 20/143 (13%), Positives = 43/143 (30%), Gaps = 7/143 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            D  G +  I+E     +      +IG  L ++   L I+ +  +  LL+  +      +
Sbjct: 275 TDRRGKVITINEMALSLLNVKNENVIGTSLLEL---LDIEEDYTLRKLLEEPDELLIDRS 331

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               E   + + +D     I   +   +G     ++H            +      SH  
Sbjct: 332 TSDREEDQMIIRVDFTM--IRRESGFITGL--VCVLHDVTEQEKNERERREFVSNVSHEL 387

Query: 209 EIKKGHSSVEKEKYDIFSQQSPP 231
                      E     + ++P 
Sbjct: 388 RTPLTSMRSYIEALSEGAWENPE 410


>gi|220909141|ref|YP_002484452.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219865752|gb|ACL46091.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 934

 Score =  338 bits (866), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 116/671 (17%), Positives = 223/671 (33%), Gaps = 37/671 (5%)

Query: 172 NREFSGFRGF---GIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228
           +    G  G    G +     +        R D     +   +   + ++        + 
Sbjct: 136 DSNIIGVVGCDIKGAITSANDEFLRMTGFSRADVLAGRVRWDEMTPADLKPLDEPAMEEL 195

Query: 229 SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288
                     K     +       V          S  S + +             +   
Sbjct: 196 LSKGKNTAYEKALIGKDGRRVPVVVGAALLRNDPESVISFVLDLTRLRLTEQRLTVQYAV 255

Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFD-------EGENLTPETVDKCPIPFFVYSHGNL 341
              L                   S  ++       + +      ++  P    +      
Sbjct: 256 TRVLAEAVTVRESVAPILQALCQSLDWEFAIIWTVDQQAGVLRYLESWPTDTLLLDEFRS 315

Query: 342 FYANPSFLLLTKYK-SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400
                +F         +        +  L   P      A +   L  +           
Sbjct: 316 LKQPITFTPGMGLPGRIWATGQPAWIECLATDPNFPRAAAAQRAGLQSAMG--------- 366

Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP----EDVDTRINKRKMEIEVMQLCS 456
             I+ + +    +            + +   G       + ++ +  +  +         
Sbjct: 367 FPIRLDDQVLGVIEGFSTHGRPPDQDLLQLMGAIGSQIGQFMERKRAEESLRQSQALFDR 426

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
            +  T     I+++   I+  N    +LF +P +D + K                    +
Sbjct: 427 FMSHTPVAAWIVDQASRIVYLNPTYFRLFNFPAQDAIGKTVAELYPPQFAEQFLQNNRPV 486

Query: 517 LSL-DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL---- 571
            +  ++ +T+E          + L  +  I + P          DI+E KQ + +     
Sbjct: 487 FTHQEVVETIETAPRTDGSTGEFLVYKFPIPQEPDELLLGGVALDITERKQAEAERERLL 546

Query: 572 ---SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
                A++ AE  +  K +FLA +SHE+R+PL  I+G++++++ + F P    +  +   
Sbjct: 547 QREQEAREQAESANRIKDEFLAVLSHELRSPLNPILGWAKLLQTRPFAP---EKAQQALQ 603

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I+R+  L   ++ DLLD+S+I  GKM L+  PV L   +  A+  VQL A  K I +  
Sbjct: 604 TIERNAKLQAQLIEDLLDVSRILRGKMVLNVCPVDLVTVIEAALETVQLSAEAKGIQLER 663

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748
             AN+I  I  D   ++QI  N+LSNAI F+P G ++ I        E  ++VRDTG G+
Sbjct: 664 HLANDIGFISGDAGRLQQIVWNLLSNAIKFSPPGHRVDIRLERV-GAEAQMQVRDTGKGI 722

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEII 807
               L    + F Q  +    +  G GLGL + + + + + G     S    +G   ++ 
Sbjct: 723 NPSFLPHVFEYFRQEDSRTTRKFGGLGLGLAIVRYLTELHGGTVQAESGGEGQGATFKVR 782

Query: 808 FPLYDTSHPHD 818
            PL    H  +
Sbjct: 783 LPLLKVGHSSE 793



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/415 (8%), Positives = 109/415 (26%), Gaps = 63/415 (15%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMI-GMRLCDVSDILHIDPNNHIG--DLLKRQNTWYGK 146
           D  G +   ++E  +  G     ++ G    D      + P +     +LL +      +
Sbjct: 146 DIKGAITSANDEFLRMTGFSRADVLAGRVRWDEMTPADLKPLDEPAMEELLSKGKNTAYE 205

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
             L   +G    VP+ + A  + +       F     +   R+      +   + +  + 
Sbjct: 206 KALIGKDGR--RVPVVVGAALLRNDPESVISF--VLDLTRLRLTEQRLTVQYAVTRVLAE 261

Query: 207 LHEIKKGHSS------------------VEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA 248
              +++  +                   V+++   +   +S P    + ++  SL +   
Sbjct: 262 AVTVRESVAPILQALCQSLDWEFAIIWTVDQQAGVLRYLESWPTDTLLLDEFRSLKQPIT 321

Query: 249 HKDDVLK--TEKYPLLTSEESSLPEQEDFHTINLNQYT---------------------- 284
               +            +    L    +F      Q                        
Sbjct: 322 FTPGMGLPGRIWATGQPAWIECLATDPNFPRAAAAQRAGLQSAMGFPIRLDDQVLGVIEG 381

Query: 285 KKQYFGTLQNNSKESFEYLSHR-----NHPSLSAYFDEGENLTPETVDKCPIPFFVYS-H 338
              +      +  +    +  +               + + L    +   P+  ++    
Sbjct: 382 FSTHGRPPDQDLLQLMGAIGSQIGQFMERKRAEESLRQSQALFDRFMSHTPVAAWIVDQA 441

Query: 339 GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398
             + Y NP++  L  + + D I     ++ L               +    +        
Sbjct: 442 SRIVYLNPTYFRLFNFPAQDAIGKT--VAELYPPQFAEQFLQNNRPVFTHQE----VVET 495

Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
                + +      + +       Q P+ +   G+  +  + +  + + E  + +
Sbjct: 496 IETAPRTDGSTGEFLVYKF--PIPQEPDELLLGGVALDITERKQAEAERERLLQR 548



 Score = 67.7 bits (164), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 19/164 (11%), Positives = 57/164 (34%), Gaps = 7/164 (4%)

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
                  +  +    R    +++    +   ++++   G+   + +G I S N    ++ 
Sbjct: 105 HLCGALRLAQDRT--RTTLEQLQANETRFRRLVDSNIIGVVGCDIKGAITSANDEFLRMT 162

Query: 486 GYPVEDILRKPFTV--FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           G+   D+L            +   +    + E+LS       EK  +G  K+ + + + +
Sbjct: 163 GFSRADVLAGRVRWDEMTPADLKPLDEPAMEELLSKGKNTAYEKALIG--KDGRRVPVVV 220

Query: 544 IIKKLPFSSCYSLTMH-DISEWKQEKNKLSHAKKIAEKESSHKS 586
               L       ++   D++  +  + +L+    +    +   +
Sbjct: 221 GAALLRNDPESVISFVLDLTRLRLTEQRLTVQYAVTRVLAEAVT 264



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 27/258 (10%), Positives = 67/258 (25%), Gaps = 13/258 (5%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD-LLKRQNTWYG 145
           W +D    +  ++    +     A   IG  + ++      +        +   Q     
Sbjct: 436 WIVDQASRIVYLNPTYFRLFNFPAQDAIGKTVAELYPPQFAEQFLQNNRPVFTHQEVVET 495

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
             T    +G+     +    +P    +    G    G+           A  +RL ++  
Sbjct: 496 IETAPRTDGSTGEFLVYKFPIP-QEPDELLLG----GVALDITERKQAEAERERLLQREQ 550

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
              E  +  + ++ E   + S +   P   +    + L +      +  +     +  + 
Sbjct: 551 EAREQAESANRIKDEFLAVLSHELRSPLNPIL-GWAKLLQTRPFAPEKAQQALQTIERNA 609

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
           +      ED   ++     K        +        L      + +       +L  + 
Sbjct: 610 KLQAQLIEDLLDVSRILRGKMVLNVCPVDLVTVIEAALETVQLSAEAKGIQLERHLANDI 669

Query: 326 VDKCPIPFFVYSHGNLFY 343
                  F     G L  
Sbjct: 670 ------GFISGDAGRLQQ 681


>gi|218887072|ref|YP_002436393.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218758026|gb|ACL08925.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 1058

 Score =  337 bits (865), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 120/651 (18%), Positives = 225/651 (34%), Gaps = 52/651 (7%)

Query: 184 VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL 243
            H  R  +     G + D  +  +     G +  E   Y +               V   
Sbjct: 217 AHQARQVSQASQDGGKADDDYLRVLAAWLGDAPGEPFDYALHGTPCARVLNSPDLCVYPD 276

Query: 244 TEYYAHKDDVLKTE---KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF 300
                  +  L      +  +  +   +         +  +         ++      + 
Sbjct: 277 GVQENFPEAELHASLGIRSYMGLALRDARGTPLGVLAVFHDLPMAPPTGESMALMRILAG 336

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDK-CPIPFFVY-SHGNLFYANPSFLLLTKYKSVD 358
              +            E E       +    +   +  +   +  A+P+      +   D
Sbjct: 337 RATAELERLRAGRALRESEARYRGLFENNHVVALLIDPTTKAIRDASPAAAEFYGWPR-D 395

Query: 359 DIEIAGGLSTLLDAPK---------LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
            +            P                        ++ T     +   T+  + E 
Sbjct: 396 VLRTMHISDINTLPPGTLHGELSSAARGERQRFRFRHRLANGTTRDVESNTGTLVLHGEP 455

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469
            L                     I  +  + R  +  +    ++L  ++E+  D I + +
Sbjct: 456 LLY-------------------SIITDVTEQRRAEEALRHSELRLRMLVESAGDAIYLAD 496

Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
             G IL  N       G+  E +LR       E+    V      E+ S          T
Sbjct: 497 GAGHILDANPEAEHQTGHTREQLLRMTLFDIDERLDQRVFARLRAELESARKAT---FET 553

Query: 530 LGSTKEEKLLSLRIIIKKLPFSSC------YSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
              T+    L + + + ++  +            + D S  K+ +++L  AK++AE  S 
Sbjct: 554 THRTRNGTPLPVEVRMAQVEETGEAEGDPLLLAIVRDSSARKRAESELRCAKEVAEAASR 613

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
            K +FLA +SHEIRTPL  I+G  ++++      +       Y     +S   +  ++ D
Sbjct: 614 TKGEFLANMSHEIRTPLNGIMGMLQLLQTDPPKAMRTV----YVGAATQSCRRLGLLLGD 669

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLR 702
           +LD+S+IE+GK+ LH EP      + E   L +  A E+ + +R S    IPR +  D  
Sbjct: 670 ILDLSRIEAGKLELHDEPFEARAVLDEVRGLFEGPAAERGLTLRVSVDERIPRHLRGDAM 729

Query: 703 SVKQIALNILSNAIHFTPSGGQI----IISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
            ++Q+  N++ NA+ FT  G  +     +  + +    V+  VRDTG+G+    L+   +
Sbjct: 730 RLRQVLFNLVGNAVKFTDQGEVVVEAWRVQASRSRGCRVVFTVRDTGIGIAEERLKDIFE 789

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           PF Q   +   R +G GLGLP+ + +V    G   + STP  GT   +  P
Sbjct: 790 PFVQAETASTRRYQGAGLGLPIVRRLVRLMCGTVTVESTPGAGTAFSVSLP 840


>gi|154252416|ref|YP_001413240.1| multi-sensor hybrid histidine kinase [Parvibaculum lavamentivorans
           DS-1]
 gi|154156366|gb|ABS63583.1| multi-sensor hybrid histidine kinase [Parvibaculum lavamentivorans
           DS-1]
          Length = 846

 Score =  337 bits (865), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 103/404 (25%), Positives = 176/404 (43%), Gaps = 52/404 (12%)

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
            QL  +   T  G+ I +R G I+  N    ++ G   EDI  +     L ++       
Sbjct: 263 EQLALVANGTDAGVLIADRTGQIVWANAGYLRMTGLEREDIEGRLPRDILVRHAGIGALK 322

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQE 567
            L E  +    +      +G TK+       I I+ +  +      Y +  +D+S  KQ 
Sbjct: 323 ILAESAADGEGR--NVEMIGLTKQGTQYWASIEIRPVRDAKGSIRNYIVVENDVSRAKQT 380

Query: 568 K-----------------------------------NKLSHAKKIAEKESSHKSDFLARV 592
           +                                     LS AK+ AE  +  KS FLA +
Sbjct: 381 EIKLKRSQLELQDRVLDLQHTSLQLEQERAKLTRTAQDLSIAKEAAENANRAKSAFLATM 440

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHE+RTP+  ++G ++++ +            +    I  SG  +L I+ND+LD+SK+E+
Sbjct: 441 SHELRTPMNGVLGMADLLLSGPL----TQEQRDGVTTIRESGECLLTILNDILDLSKLEA 496

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNI 711
           G++ L  EP S    +   + +++  A EK +++  S   +IP+ I++D   ++QI  N+
Sbjct: 497 GRLELEPEPTSPMTVLETVVEVLRPNAKEKGLVLTKSEEGHIPQRIMSDPTRLRQILFNL 556

Query: 712 LSNAIHFTPSGGQIIISTTHT-----SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
           + NAI FTP G ++ +S            E++  VRDTG+G+    L +    F Q  +S
Sbjct: 557 VGNAIKFTPQG-EVSVSLAARACDDPDTAELVFTVRDTGIGIPEAMLPRLFTRFQQADSS 615

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
                 GTGLGL + + +     G   + ST  KG+   +  P+
Sbjct: 616 ISRTYGGTGLGLAITRELTTLMNGTIEVESTEGKGSCFTVRLPV 659



 Score = 46.2 bits (108), Expect = 0.026,   Method: Composition-based stats.
 Identities = 24/236 (10%), Positives = 57/236 (24%), Gaps = 10/236 (4%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD-ILHIDPNNHIGDLLKRQNTWYGKTT 148
           D  G +   +    +  G     + G    D+      I     + +          +  
Sbjct: 280 DRTGQIVWANAGYLRMTGLEREDIEGRLPRDILVRHAGIGALKILAESAADGEGRNVEMI 339

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF--GIVHVNRVDNDPRALGKRLDKKFSH 206
               +GT  +  I++   P+         +      +    + +   +     L  +   
Sbjct: 340 GLTKQGTQYWASIEI--RPVRDAKGSIRNYIVVENDVSRAKQTEIKLKRSQLELQDRVLD 397

Query: 207 LHEIKKGHSSVEKEKYDIFSQ-----QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
           L            +            ++     R K+   +   +              L
Sbjct: 398 LQHTSLQLEQERAKLTRTAQDLSIAKEAAENANRAKSAFLATMSHELRTPMNGVLGMADL 457

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
           L S   +  +++   TI  +          + + SK     L     P+      E
Sbjct: 458 LLSGPLTQEQRDGVTTIRESGECLLTILNDILDLSKLEAGRLELEPEPTSPMTVLE 513


>gi|307268694|ref|ZP_07550063.1| PAS domain S-box [Enterococcus faecalis TX4248]
 gi|306515006|gb|EFM83552.1| PAS domain S-box [Enterococcus faecalis TX4248]
          Length = 609

 Score =  337 bits (865), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 84/418 (20%), Positives = 181/418 (43%), Gaps = 29/418 (6%)

Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
              R   I+  R +      +     ++  +         E ++    +  ME E  +L 
Sbjct: 207 GEMREQAIRIARGDYAG--KVEVHGKDELGQLAETFNQLSERIEE--AQETMEAERNRLD 262

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           S+L   +DG+   +R G +++ N     L     E+++       L+          L +
Sbjct: 263 SVLTHMTDGVIATDRRGKVITINEMALSLLNVKNENVIGTSLLELLDIEEDYT----LRK 318

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSH 573
           +L       +++ T    +++ ++ +   + +      +     +HD++E ++ + +   
Sbjct: 319 LLEEPDELLIDRSTSDREEDQMIIRVDFTMIRRESGFITGLVCVLHDVTEQEKNERE--- 375

Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
                      + +F++ VSHE+RTPLT++  + E +    +          +       
Sbjct: 376 -----------RREFVSNVSHELRTPLTSMRSYIEALSEGAW--ENPEIAPNFLKVTLEE 422

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN--EKRILIRTSFA 691
            + ++ ++NDLL++S+++SG  +L  E V+ +E ++  +    +     +K   IR  F 
Sbjct: 423 TDRMIRMINDLLNLSRMDSGNTHLQLEYVNFNELINFVLDRFDMMIENEQKNYKIRREFT 482

Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751
                +  D   V Q+  NIL+NAI ++P GG I       ++  V+  + D G+G+   
Sbjct: 483 KRDLWVELDTDKVIQVLDNILNNAIKYSPDGGVITCRL-VETHNNVVFSISDQGLGIPKK 541

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +L K  + F ++  ++     GTGLGL ++K ++ A+ G  ++ ST  +G+   I  P
Sbjct: 542 DLGKVFERFYRVDKARARAQGGTGLGLAISKEVIRAHNGSIWVESTEGEGSTFYISLP 599



 Score = 37.7 bits (86), Expect = 8.1,   Method: Composition-based stats.
 Identities = 20/143 (13%), Positives = 43/143 (30%), Gaps = 7/143 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            D  G +  I+E     +      +IG  L ++   L I+ +  +  LL+  +      +
Sbjct: 275 TDRRGKVITINEMALSLLNVKNENVIGTSLLEL---LDIEEDYTLRKLLEEPDELLIDRS 331

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               E   + + +D     I   +   +G     ++H            +      SH  
Sbjct: 332 TSDREEDQMIIRVDFTM--IRRESGFITGL--VCVLHDVTEQEKNERERREFVSNVSHEL 387

Query: 209 EIKKGHSSVEKEKYDIFSQQSPP 231
                      E     + ++P 
Sbjct: 388 RTPLTSMRSYIEALSEGAWENPE 410


>gi|309792207|ref|ZP_07686679.1| multi-sensor signal transduction histidine kinase [Oscillochloris
            trichoides DG6]
 gi|308225748|gb|EFO79504.1| multi-sensor signal transduction histidine kinase [Oscillochloris
            trichoides DG6]
          Length = 2607

 Score =  337 bits (865), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 114/614 (18%), Positives = 230/614 (37%), Gaps = 28/614 (4%)

Query: 213  GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ 272
               +VE              + R+ +++S L      +      +               
Sbjct: 2002 DAEAVEGTFALASQASQAIRNARLFDQISKLAADLEVRVLERTADLARATDQLSEEKERL 2061

Query: 273  EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP 332
            E  H I L   T+      +Q   +   E L       +    + G  L    +      
Sbjct: 2062 EAVHAITLELTTQLDLDSIIQRALELISENLGVVRGSIMLRDTENGSLLCRAVLYNRGDA 2121

Query: 333  FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
                   +   +      + + +   ++         +     +D+      +  +++  
Sbjct: 2122 RAANIPLSFQGSEGLAGWVMRTQEPVNVSDVNEDERWVKEAGRADDVRSVAAVPIKTNDA 2181

Query: 393  CIAASARLHTIQW--NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450
             +        ++          +  I    A+        N I        I   +   E
Sbjct: 2182 ALGVLVLSSPVEHYFTDSQMNLLGTIASVIASAVSNAQLYNFITELATRNSILLEEQREE 2241

Query: 451  VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE---QNTPS 507
              +  ++  + ++G+ +++ +G +   N A  ++   P E +LR+P     +    +   
Sbjct: 2242 SSKSAAVFRSVTEGVIVLDPQGQVTLFNPAAEQVLEIPAERLLRQPLNRLHDYGEDDDQR 2301

Query: 508  VMNHYLTEILSLDLRQTLEKITLG-----STKEEKLLSLRIIIKKLPFSSCY--SLTMHD 560
                 L   L   L+Q  E   +       T   ++++L I     P    Y   + + D
Sbjct: 2302 KRAQTLYTGLMTGLKQVQETDKIYSSSLDLTNPNQVIALNIAPVIGPDGQGYGKVIVLRD 2361

Query: 561  ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
            I+                 +    K  F++ VSHE+RTPLTAI G+ +V+       L +
Sbjct: 2362 ITR--------------EIEADEAKRQFISDVSHELRTPLTAIKGYVDVLLLSGTQTLTS 2407

Query: 621  PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
               + Y   I  + N +  ++ D+L+ S+ ++ K  L+F  +S+ E + E +S ++L   
Sbjct: 2408 D-QVSYLGIIKNNTNRLKALIEDILEFSRPDASK-KLNFTRLSIPEVIDEVVSSLRLEYQ 2465

Query: 681  EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
             K + +     +++P ++AD + + Q+  N+ SNA+ +T  GG I +           + 
Sbjct: 2466 RKDMSVEVDAPHDLPTVMADQKRITQVVFNLFSNAVKYTFEGGHIHVRAFLNRANMFQVD 2525

Query: 741  VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
            V DTGVGM+  + +K  +PF +  N  +    GTGLGL +AKA+++ + G+ ++ S   K
Sbjct: 2526 VEDTGVGMSPEQRKKLFRPFYRADNPLRDVAGGTGLGLSIAKALIEQHGGEMWVTSEIGK 2585

Query: 801  GTLIEIIFPLYDTS 814
            G+    I PL  T 
Sbjct: 2586 GSTFSFILPLQQTD 2599



 Score = 40.4 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/117 (11%), Positives = 34/117 (29%), Gaps = 9/117 (7%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ-------N 141
            +D  G +   +    + +   A +++   L  + D    D        L           
Sbjct: 2259 LDPQGQVTLFNPAAEQVLEIPAERLLRQPLNRLHDYGEDDDQRKRAQTLYTGLMTGLKQV 2318

Query: 142  TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
                K     ++ TN    I L   P+   + +  G+    ++     + +     +
Sbjct: 2319 QETDKIYSSSLDLTNPNQVIALNIAPVIGPDGQ--GYGKVIVLRDITREIEADEAKR 2373


>gi|114776707|ref|ZP_01451750.1| two-component hybrid sensor and regulator alr3120 [Mariprofundus
           ferrooxydans PV-1]
 gi|114552793|gb|EAU55224.1| two-component hybrid sensor and regulator alr3120 [Mariprofundus
           ferrooxydans PV-1]
          Length = 701

 Score =  337 bits (865), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 112/495 (22%), Positives = 211/495 (42%), Gaps = 25/495 (5%)

Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA----------IK 382
               ++G +   N     +  Y++ D +              ++   A            
Sbjct: 42  IATDANGVIQIFNVGAERMLGYEAADVMNNITPADLSDPQELIARAEALSAELDTPITPG 101

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
              L       I     L  I+ +     A+        +     +    I  ++   + 
Sbjct: 102 FEALVFKATRGIEDIYELTYIRKDGSRFPAV-VSVTALRDPQNNIIGYLLIGTDNTARKQ 160

Query: 443 NKR-------KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
            +        ++  +     S++E+  D I   +  GII   N+ +  L G   ++++  
Sbjct: 161 VEADQAKLDQRLRDQQFYTRSLIESNIDAIIATDPSGIISDVNKQMEALTGCTRDELIGA 220

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SC 553
           P   F     P      +  +L+       E        +E ++S               
Sbjct: 221 PMKNFF--TDPQRAEAGIKRVLNEKKVTDYELTARAWDGKETVVSYNATTFYDRDRKLQG 278

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
                 D+++ K    +L  AK +AEK S  KSDFL+ +SHE+R+PL AI+GF ++++++
Sbjct: 279 VFAAARDVTDRKHLDVELEDAKSVAEKASLAKSDFLSSMSHELRSPLNAILGFGQLMESE 338

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
              P       E    I ++G  +L ++N++LD+SK+ESGK+ L  EPV L E + E  S
Sbjct: 339 --SPPPTDSQKESIAQILQAGWHLLTLINEILDLSKVESGKVPLSREPVLLSEVMLECQS 396

Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
           +V+  A E+ I +    ++    I AD   VKQI +N+L+NAI +  + G+I +  T ++
Sbjct: 397 MVEPQAQERGIRMTFPQSDTPYFIHADRTRVKQIMINLLTNAIKYNSAKGEIEVEYTESA 456

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
              + + ++D+G G+T  +LE+  +PF ++   +    EGTG+GL ++K +V+   G   
Sbjct: 457 PGRLRISIKDSGAGLTPEQLEQLFEPFNRL-GQENGSEEGTGVGLVVSKRLVELMGGTIG 515

Query: 794 IFSTPAKGTLIEIIF 808
             S+   G++     
Sbjct: 516 AESSLGAGSVFWFEL 530



 Score = 54.3 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 29/321 (9%), Positives = 74/321 (23%), Gaps = 42/321 (13%)

Query: 40  KKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEIS 99
           ++ N      +      Q +  +         N+  F  I          DA+G ++  +
Sbjct: 3   RQTNETAGIDDAIPEAGQPKALLREALQNAIFNSANFSSIA--------TDANGVIQIFN 54

Query: 100 EELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK--------------------- 138
               + +G  A  +    + +++     DP   I                          
Sbjct: 55  VGAERMLGYEAADV----MNNITPADLSDPQELIARAEALSAELDTPITPGFEALVFKAT 110

Query: 139 RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRAL-- 196
           R      + T    +G+    P  ++   +        G+   G  +  R   +      
Sbjct: 111 RGIEDIYELTYIRKDGS--RFPAVVSVTALRDPQNNIIGYLLIGTDNTARKQVEADQAKL 168

Query: 197 ---GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKD 251
               +        L E              I         L    ++++          D
Sbjct: 169 DQRLRDQQFYTRSLIESNIDAIIATDPSGIISDVNKQMEALTGCTRDELIGAPMKNFFTD 228

Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
                     + +E+     +      +  +        T  +  ++     +     + 
Sbjct: 229 PQRAEAGIKRVLNEKKVTDYELTARAWDGKETVVSYNATTFYDRDRKLQGVFAAARDVTD 288

Query: 312 SAYFDEGENLTPETVDKCPIP 332
             + D          +K  + 
Sbjct: 289 RKHLDVELEDAKSVAEKASLA 309



 Score = 45.0 bits (105), Expect = 0.051,   Method: Composition-based stats.
 Identities = 22/175 (12%), Positives = 47/175 (26%), Gaps = 5/175 (2%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            D  G + ++++++    G    ++IG  + +               L +++ T Y  T 
Sbjct: 193 TDPSGIISDVNKQMEALTGCTRDELIGAPMKNFFTDPQRAEAGIKRVLNEKKVTDYELTA 252

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                       +   A   Y R+R+  G   F                +          
Sbjct: 253 R---AWDGKETVVSYNATTFYDRDRKLQGV--FAAARDVTDRKHLDVELEDAKSVAEKAS 307

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
             K    S    +              M+++    T+        +    + LLT
Sbjct: 308 LAKSDFLSSMSHELRSPLNAILGFGQLMESESPPPTDSQKESIAQILQAGWHLLT 362


>gi|254227634|ref|ZP_04921065.1| conserved hypothetical protein [Vibrio sp. Ex25]
 gi|262395682|ref|YP_003287535.1| putative sensory box sensor histidine kinase/response regulator
           [Vibrio sp. Ex25]
 gi|151939676|gb|EDN58503.1| conserved hypothetical protein [Vibrio sp. Ex25]
 gi|262339276|gb|ACY53070.1| putative sensory box sensor histidine kinase/response regulator
           [Vibrio sp. Ex25]
          Length = 873

 Score =  337 bits (865), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 97/374 (25%), Positives = 167/374 (44%), Gaps = 12/374 (3%)

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
           +  ++ QL  + E   D I I + +G I   N A  +L  Y +E+++ K     L+    
Sbjct: 234 LSAKISQLAEVAEHARDTIIITHPDGTIAWVNPAFEQLTEYTLEEVIGKSPGELLQGPDT 293

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDIS 562
                 L    S+     +    L  TK +    + + +  +         +     DI+
Sbjct: 294 DPNTVALLS-KSVRKHSPIRVEILNYTKSKHPYWVELELSPVFDEDGGLLRFIAVERDIT 352

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           + ++ + +LS A   ++K    KS+FLA +SHEIRTP+ AI+G SE++            
Sbjct: 353 DRRRMERRLSSALDKSKKAMQAKSEFLANMSHEIRTPMNAIMGISEILLENENRREP--- 409

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             E    + +S N ++ I+ND+LD SK+E+GK+ L  E       V    +L    A++K
Sbjct: 410 -RELLLLLHKSANNLVTIINDILDYSKVEAGKLTLVEEEFDFRSLVESCTALCAYQADKK 468

Query: 683 RILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
            + +       +  ++  D   + QI LN++ NA+ FT  G  +++    + +      V
Sbjct: 469 NLKLLVDMPLAMNTVVVGDKGRINQILLNLIGNAVKFTDEG-HVLLKVRESEHGF-DFSV 526

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            DTG+G+    L   M  F Q+  S   R EGTGLGL ++K ++    G+  + S   KG
Sbjct: 527 SDTGIGIPEDRLAHIMDKFEQVDTSATRRHEGTGLGLAISKRLISMYNGELCVHSDFGKG 586

Query: 802 TLIEIIFPLYDTSH 815
           +       L   S 
Sbjct: 587 SCFSFSLQLPKQSQ 600



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 12/140 (8%), Positives = 38/140 (27%), Gaps = 6/140 (4%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTWYGKTT 148
             G +  ++    +       ++IG    ++      DPN    +   +++ +    +  
Sbjct: 257 PDGTIAWVNPAFEQLTEYTLEEVIGKSPGELLQGPDTDPNTVALLSKSVRKHSPIRVEIL 316

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
            +       +V ++L+  P++  +      R   +                   K     
Sbjct: 317 NYTKSKHPYWVELELS--PVFDEDGGL--LRFIAVERDITDRRRMERRLSSALDKSKKAM 372

Query: 209 EIKKGHSSVEKEKYDIFSQQ 228
           + K    +    +       
Sbjct: 373 QAKSEFLANMSHEIRTPMNA 392



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 47/134 (35%), Gaps = 7/134 (5%)

Query: 321 LTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
              E  +       + +  G + + NP+F  LT+Y   + I  + G   LL  P   D +
Sbjct: 240 QLAEVAEHARDTIIITHPDGTIAWVNPAFEQLTEYTLEEVIGKSPG--ELLQGP---DTD 294

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
                +L +S R        +     ++     +        ++    +    +E +  D
Sbjct: 295 PNTVALLSKSVRKHSPIRVEILNYTKSKHPY-WVELELSPVFDEDGGLLRFIAVERDITD 353

Query: 440 TRINKRKMEIEVMQ 453
            R  +R++   + +
Sbjct: 354 RRRMERRLSSALDK 367


>gi|296188236|ref|ZP_06856628.1| PAS domain S-box domain-containing protein [Clostridium
           carboxidivorans P7]
 gi|296047362|gb|EFG86804.1| PAS domain S-box domain-containing protein [Clostridium
           carboxidivorans P7]
          Length = 859

 Score =  337 bits (865), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 121/526 (23%), Positives = 218/526 (41%), Gaps = 29/526 (5%)

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLT 352
           +   ES        +  L       E       ++ PI   ++   G +  +N SF  + 
Sbjct: 223 DTVCESVIARDITENKKLHKELYNSEKKFRSIYEQSPIGIELFDADGEVISSNESFCKMF 282

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
               + + +     S   + P + ++   +      S  TC     +    + N+     
Sbjct: 283 NLDDIKEFK----YSNFFNTPHIYESVKNRIRNKKTSRITCKYKLNQRADFETNKNRIYY 338

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA-IINRE 471
              +     N+  +         +    +  ++K++             SD I  I + +
Sbjct: 339 FDIVTTPILNEKKDLTAILLQVQDITKLKTVEKKVQN--------FTNLSDDIFSIFDYD 390

Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
           G  L  +  ++K+  +  +D+L K F  F+  +      +  + +L         +    
Sbjct: 391 GKFLQVSAGMNKILEWSEKDVLYKNFKDFVHLDDIQGCVNDFSYMLKCGRHIFKNRYI-- 448

Query: 532 STKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
             K      +      +   S       DI++  + +++L  AK  AE+ +  KS FLA 
Sbjct: 449 -CKNGTYKWIEWNSFVIKEYSLIYSIGRDITKRMESEDELKKAKIAAEEANIEKSRFLAN 507

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           +SHEIRTP+  I+G +++               EY N +  S + +LDI+ND+LDISKIE
Sbjct: 508 MSHEIRTPINGIMGMTDLTLMTELTN----EQREYLNMVKASSSHLLDIINDILDISKIE 563

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR--ILADLRSVKQIAL 709
           SGK  L   P +L+E +S+ +  + + A +K I +      NI    I+ D   + QI +
Sbjct: 564 SGKFKLDLVPFNLEERISKMVKNISVLAYKKFIEVMYFIDPNISEGNIIGDPSKLDQILM 623

Query: 710 NILSNAIHFTPSGGQIIISTTHT---SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
           N+LSNAI FT  G  I+ +          ++   V DTG+G+   +++K  K F QI +S
Sbjct: 624 NLLSNAIKFTDRGNIIVCAKKVEGPKDKIKIQFSVSDTGIGIPEDKMDKLFKTFSQIDDS 683

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII---FP 809
              +  GTGLGL ++K +V+   G  ++ S   +G+        FP
Sbjct: 684 YTKKYGGTGLGLSISKHLVNMMNGDIWVTSKHNEGSCFYFTAEFFP 729



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 6/127 (4%)

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
           QL SI +A+ D I     +G I+S N+A  ++FGY  +++L K F++       +  N  
Sbjct: 128 QLASIADASEDAIIGKTLDGKIISWNKAAERIFGYSEQELLGKKFSIL----DNNENNKV 183

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS--LTMHDISEWKQEKNK 570
           L   +S +  +  E   +    E   LS+ I   K          +   DI+E K+   +
Sbjct: 184 LCSTISKNGIKDYEIEMINRNNEVIYLSISISPVKNYSGDTVCESVIARDITENKKLHKE 243

Query: 571 LSHAKKI 577
           L +++K 
Sbjct: 244 LYNSEKK 250



 Score = 78.1 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 29/260 (11%), Positives = 78/260 (30%), Gaps = 17/260 (6%)

Query: 321 LTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
                 D            G +   N +   +  Y   + +     +        L +N 
Sbjct: 128 QLASIADASEDAIIGKTLDGKIISWNKAAERIFGYSEQELLGKKFSI--------LDNNE 179

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
             K +    S          +          + ++       N   + + ++ I  +  +
Sbjct: 180 NNKVLCSTISKNGIKDYEIEMIN---RNNEVIYLSISISPVKNYSGDTVCESVIARDITE 236

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV-EDILRKPFT 498
            +   +++     +  SI E +  GI + + +G ++S+N +  K+F     ++     F 
Sbjct: 237 NKKLHKELYNSEKKFRSIYEQSPIGIELFDADGEVISSNESFCKMFNLDDIKEFKYSNFF 296

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CY 554
                           +   +  +  L +     T + ++    I+   +          
Sbjct: 297 NTPHIYESVKNRIRNKKTSRITCKYKLNQRADFETNKNRIYYFDIVTTPILNEKKDLTAI 356

Query: 555 SLTMHDISEWKQEKNKLSHA 574
            L + DI++ K  + K+ + 
Sbjct: 357 LLQVQDITKLKTVEKKVQNF 376



 Score = 41.9 bits (97), Expect = 0.50,   Method: Composition-based stats.
 Identities = 13/140 (9%), Positives = 43/140 (30%), Gaps = 7/140 (5%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151
            G +   ++   +  G    +++G +   +    + + N  +   + +      +  +  
Sbjct: 146 DGKIISWNKAAERIFGYSEQELLGKKFSIL---DNNENNKVLCSTISKNGIKDYEIEMIN 202

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
                +Y+ I ++  P+ + +          I      +          +KKF  ++E  
Sbjct: 203 RNNEVIYLSISIS--PVKNYSG--DTVCESVIARDITENKKLHKELYNSEKKFRSIYEQS 258

Query: 212 KGHSSVEKEKYDIFSQQSPP 231
                +     ++ S     
Sbjct: 259 PIGIELFDADGEVISSNESF 278


>gi|237654220|ref|YP_002890534.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T]
 gi|237625467|gb|ACR02157.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T]
          Length = 1023

 Score =  337 bits (865), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 104/631 (16%), Positives = 208/631 (32%), Gaps = 30/631 (4%)

Query: 197 GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256
           G+R D  F+ +  + +  + +   +          P L + +   S              
Sbjct: 97  GRRDDAAFARMRALVEELARLRGWQGVALLDADGAPTLAVGSPDLSAHAELIADVLRQPR 156

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
            +   L  +            +              +       E        + +    
Sbjct: 157 VELVDLHQDARGRTHYGVLAPVGAPSRGVAYLTWEAETALYPMVEAWPVPTRSAETYLVR 216

Query: 317 EGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
                              +          +         +     A G   +L   +  
Sbjct: 217 REGEGVRFLTP------LRHQADAAL----ALERPLATPDLPAARAALGERGILSGGRDY 266

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
               +        + T     A +   +           +    A           +   
Sbjct: 267 RGVPV-LAYAAAVEGTPWLMLAEIDEREAYSGIRTLTWGMGVVMALGLMLVYSGGYLVWR 325

Query: 437 DVDTRINKRKMEIE---VMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDI 492
               +  +  ++       +   I E    G+ +++     I   N   + + G  V ++
Sbjct: 326 RDREQRERATLQARQIAEARFRVIFEQAPLGVVLLDPRTRRITEANPRFAAIVGRSVGEL 385

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL---- 548
           +          +  +     L  + +  +             +   + + +    +    
Sbjct: 386 VGVDPIALTHPDDVAESLRQLGRLDAGRIAG-YRLNKRYLRPDGTPVWVSLAFAPVQVAS 444

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
             +  Y   + DIS   + + +L  A   A   ++ KS+FLA +SHEIRTP+ A++G ++
Sbjct: 445 EDAPRYLGIVEDISARIEMEERLREASAAAAAANAAKSEFLAHMSHEIRTPMNAVLGLAQ 504

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
           V++ +   P       +    I  +G  +L I++D+LD+SKIE+G++ +   P  L   +
Sbjct: 505 VLEREPLAPA----QRDMVGRIRGAGASLLAILDDVLDLSKIEAGQLRIEPRPFDLRALL 560

Query: 669 SEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIII 727
           +   SL+   A  K + +R       P ++  D   ++QI +N++SNAI FT  G ++ +
Sbjct: 561 ANLDSLMGQAARAKGLALRIEPPALPPGQLRGDGLRIEQILINLVSNAIKFTERG-EVSL 619

Query: 728 STTHTSNEEVILR----VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
                   +V LR    VRDTG+G+      +   PF Q       R  GTGLGL + K 
Sbjct: 620 RVRADEVGDVRLRLRAEVRDTGIGIAPEAQARLFAPFTQADAGIARRFGGTGLGLSICKR 679

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           +V+   G   + S P  G+      PL   +
Sbjct: 680 LVELMGGAIGVHSQPGLGSTFWFELPLERVA 710



 Score = 55.4 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 42/405 (10%), Positives = 92/405 (22%), Gaps = 46/405 (11%)

Query: 94  YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNT--WYGKTTLWP 151
            + E +      +G    +++G+    ++    +  +      L       +        
Sbjct: 366 RITEANPRFAAIVGRSVGELVGVDPIALTHPDDVAESLRQLGRLDAGRIAGYRLNKRYLR 425

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
            +GT   V + LA  P+   + +    R  GIV       +     +      +  +  K
Sbjct: 426 PDGTP--VWVSLAFAPVQVASEDAP--RYLGIVEDISARIEMEERLREASAAAAAANAAK 481

Query: 212 KGHSSVEKEKYDIF-------------SQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
               +    +                    +P     +     +     A  DDVL   K
Sbjct: 482 SEFLAHMSHEIRTPMNAVLGLAQVLEREPLAPAQRDMVGRIRGAGASLLAILDDVLDLSK 541

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
                      P        NL+    +           E       +            
Sbjct: 542 IEAGQLRIEPRPFDLRALLANLDSLMGQAARAKGLALRIEPPALPPGQLRGDGLRIEQIL 601

Query: 319 ENLTPETV-----DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIA---------G 364
            NL    +      +  +       G++     + +  T      + +            
Sbjct: 602 INLVSNAIKFTERGEVSLRVRADEVGDVRLRLRAEVRDTGIGIAPEAQARLFAPFTQADA 661

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYR---------SDRTCIAASARLHTIQWNRENSLAMTF 415
           G++       L  +   + V L              +       L  +      S+ +  
Sbjct: 662 GIARRFGGTGLGLSICKRLVELMGGAIGVHSQPGLGSTFWFELPLERVAGGEPASVGVVA 721

Query: 416 IPFEKANQFPENMPQNGIEPED----VDTRINKRKMEIEVMQLCS 456
            P       P       +  +D     D       +E     L +
Sbjct: 722 APEGDRAAGPRLAGMQVLVVDDSAMNRDLVQGALALEGACATLAA 766


>gi|327542873|gb|EGF29329.1| sensory transduction histidine kinase [Rhodopirellula baltica WH47]
          Length = 784

 Score =  337 bits (865), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 97/488 (19%), Positives = 209/488 (42%), Gaps = 27/488 (5%)

Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399
            + + N     +   ++ +  E A           L        + + + +   +     
Sbjct: 132 RIKHLNA----VLDIRAEEGSEAARAAVIQNLDQNLMGKIDDLAISMRKIEEDLLVVREA 187

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM--EIEVMQLCSI 457
           + T  +      +++             +       E    +  +  +       ++   
Sbjct: 188 MATRAYRSGIVTSVSSTLIGLI-----LVGSVLYLLERNRRKAERDALMLNATRERVQLA 242

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
           L+A   G   I+ E   L T+    ++ G   E++  +     +  +  + +   +   +
Sbjct: 243 LDAAEMGAWNIDPETNTLQTDERYRRIHGVEQEEMTFEDSLKRIHPDDRARVRQAVRASM 302

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRII-IKKLPFSSC------YSLTMHDISEWKQEKNK 570
           S               ++  +  +    I +            +  T+ D++E K+++ +
Sbjct: 303 SPLDPSPYSVEYRVVHRDGSIRWVSSKGIARASRRRGKAVLTSFDGTVADVTERKRQEER 362

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           L  +++IA   +  KS+FLA +SHEIRTP+ AI+G+++V+     G L +P        I
Sbjct: 363 LQRSEQIALAANQSKSEFLANMSHEIRTPMAAILGYADVLL----GHLEDPDNRNCVMII 418

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
            R+G  +L ++ND+LD+S+IE+GK+++  E V L   V +  SL+Q+ A+EK +  +  F
Sbjct: 419 KRNGEHLLSLINDILDLSRIEAGKLSVDAESVPLPRLVGDIQSLMQVRADEKNVDFQVEF 478

Query: 691 ANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILRVRDTGV 746
              +P+ I  D   ++Q+ +N++ NAI FT  G  + +        +   V   + DTG+
Sbjct: 479 EGRVPQSIETDPTRLRQVLINLIGNAIKFTDEGS-VRLKVRFMKGADPPVVEFSIVDTGI 537

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G++  + ++  KPF Q   S   +  G+GLGL +++ +++   G+  + S   +G+   +
Sbjct: 538 GISKEQQDRLFKPFSQGDASVTRKYGGSGLGLAISQRLIEMMDGEMSLESELGEGSTFFV 597

Query: 807 IFPLYDTS 814
             P++   
Sbjct: 598 RLPVHSVE 605



 Score = 41.9 bits (97), Expect = 0.49,   Method: Composition-based stats.
 Identities = 31/252 (12%), Positives = 66/252 (26%), Gaps = 18/252 (7%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR------Q 140
           WNID      +  E   +  G    +   M   D    +H D    +   ++        
Sbjct: 251 WNIDPETNTLQTDERYRRIHGVEQEE---MTFEDSLKRIHPDDRARVRQAVRASMSPLDP 307

Query: 141 NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
           + +  +  +   +G+  +V     A     R  +       G V             +R 
Sbjct: 308 SPYSVEYRVVHRDGSIRWVSSKGIARASRRR-GKAVLTSFDGTVADVTERKRQEERLQRS 366

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
           ++     ++ K    +    +          P   +      L  +    D+        
Sbjct: 367 EQIALAANQSKSEFLANMSHEIR-------TPMAAILGYADVLLGHLEDPDNRNCVMIIK 419

Query: 261 LLTSEESSL-PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
                  SL  +  D   I   + +       L     +    +  R       +  E E
Sbjct: 420 RNGEHLLSLINDILDLSRIEAGKLSVDAESVPLPRLVGDIQSLMQVRADEKNVDFQVEFE 479

Query: 320 NLTPETVDKCPI 331
              P++++  P 
Sbjct: 480 GRVPQSIETDPT 491


>gi|307592363|ref|YP_003899954.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7822]
 gi|306986008|gb|ADN17888.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7822]
          Length = 1262

 Score =  337 bits (865), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 119/807 (14%), Positives = 255/807 (31%), Gaps = 89/807 (11%)

Query: 67   YLDSENTFVFDPIPRTVRFTWN--------IDAHGYLKEISEELPKTIGNYAFKMI-GMR 117
                E  F       T++  +         +D +      S+         +   + G  
Sbjct: 479  TAQKETEFALKQGKETLKLFFKYVPAGVVVVDRNMCYLMASQRWLDDYKISSDDTLQGHS 538

Query: 118  LCDVSDILHIDPNNHIGDLLKRQNTWY-GKTTLWPIEGTNLYVPIDLAALPIYSRNREFS 176
            L  +           I  L  +  T    +      +GT  ++  ++  +P Y    + +
Sbjct: 539  LYQIV-PEIPPKWRQIHQLCVKGATEKCDEELFIRSDGTEQWLRWEI--VPWYDNLGKEA 595

Query: 177  GFRGFG-----------IVHVN------RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEK 219
            G   F             +         R+      L +        L E KK    + K
Sbjct: 596  GIIIFTENISERKQAEIALQELNSQLEQRIIERTEQLQRAKKNIEQELLERKKLERELRK 655

Query: 220  EKYDIFSQQSPPPHLRMKNKVSSL---------------------------TEYYAHKDD 252
             +  +    +     ++   ++ L                            +       
Sbjct: 656  REQLLDGFFNAASDAKVGMCINDLNFRFLKINQALADINGYSIEDHLGRNLDDVLPELAP 715

Query: 253  VLKTEKYPLLTSEESS-LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
             LK     ++ S +   L       +           +  +   ++      +     + 
Sbjct: 716  TLKPLWENVIDSNQPINLEISAVVPSSRGVMRYWSVAYFPILAENENLIGIGAVVIEITE 775

Query: 312  SAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
            S   +  +    E ++  P      S     + Y N +   L        +         
Sbjct: 776  SKRLELEQAKLIEILEATPDIIATASSATQKVGYCNQALRKLLGVAPNSPVTDLTIADVY 835

Query: 370  LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
                        + +     +      +A L          +  + +             
Sbjct: 836  --PQWAYSMIQNEGIPTAIREGIWRGETAFLGI----DGEEIPFSQVIIAHTFGTEAVQS 889

Query: 430  QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
             + I  +  + +  +  +     +  S+L      +  ++ +G +   N     L  Y  
Sbjct: 890  VSTIARDISEQKQKEAILRESDRRWQSLLNNIKLIVVGLDLQGNVEYVNPFFLSLTEYTE 949

Query: 490  EDILRKPFTVFLEQNTPSVMNH--YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
             +IL K +                   E+L  +     +   L S+ EE+L++    + +
Sbjct: 950  PEILGKNWFNQFLPADIQTSLTTTIFRELLEQEKYIYYQNPILTSSGEERLIAWTNTVLR 1009

Query: 548  LPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
                          DI+E ++               +  K +F++ VSHE+RTPLT++  
Sbjct: 1010 DANEQPIGTVSIGQDITESEKL--------------ARMKDEFISVVSHELRTPLTSLQA 1055

Query: 606  FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
               ++  +   P  +    E         N ++ +VND+LD+ ++ SGK+ L  +    D
Sbjct: 1056 ALSLLYEKIIDPTSDEGQ-ETIEIATEGVNRLVRLVNDILDLERLSSGKIRLEKQFCQTD 1114

Query: 666  EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725
              +  A+  ++  A E +I+I++ + N       D   + QI +N+L+NAI F+P    I
Sbjct: 1115 GVILAALDQIKEIAKEAQIIIKSEYEN--FFFWCDSDRLVQILINLLNNAIKFSPQNSII 1172

Query: 726  IISTTHTSNEE--VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
             +     ++    ++  + D G G+ + +LE     FGQ+  S      GTGLGL + ++
Sbjct: 1173 ELKVQQQNSPMPSLLFSISDQGRGIPSDKLESIFDRFGQVDASDSRAKGGTGLGLAICRS 1232

Query: 784  MVDANMGKFYIFSTPAKGTLIEIIFPL 810
            +V  + G+ ++ S   +G+      PL
Sbjct: 1233 IVTQHGGEIWVNSKLGQGSTFYFTIPL 1259



 Score =  107 bits (267), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 59/551 (10%), Positives = 146/551 (26%), Gaps = 61/551 (11%)

Query: 94  YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIE 153
            +   +    +  G    + +G ++  +               +  Q  W G+      +
Sbjct: 261 KIIYWNRGAERLYGWTKEEALGQKIESMLQTQFPISLEAAHQTIIEQEYWEGELLHIRRD 320

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
           G    + ++   +                               K  +++     E+   
Sbjct: 321 G--QPLIVESRQVLQRDSKGNPE--IILETNRDLTRRKQLEENLKINEERLRLTLELTGI 376

Query: 214 HSSVEKEKYD-------IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
            S     K +       +F      P     +    L + ++   + ++ +    + + +
Sbjct: 377 GSWDFNLKTEAFISSDNVFRMSGLDPKTAAPSYALWLEQIHSDDRERVEQKLQEAIQN-Q 435

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
           + L  +        +          + + + ++   L      +     +       ET+
Sbjct: 436 TPLEVKYRVVHPKGHICWILSKASFICDQTGQATRMLGIWMDITAQKETEFALKQGKETL 495

Query: 327 DK----CPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEI----------AGGLSTLLD 371
                  P    V         A+  +L   K  S D ++                 +  
Sbjct: 496 KLFFKYVPAGVVVVDRNMCYLMASQRWLDDYKISSDDTLQGHSLYQIVPEIPPKWRQIHQ 555

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN-RENSLAMTFIPFEKANQFPENMPQ 430
                        +  RSD T       +     N  + +  + F       +  E   Q
Sbjct: 556 LCVKGATEKCDEELFIRSDGTEQWLRWEIVPWYDNLGKEAGIIIFTENISERKQAEIALQ 615

Query: 431 NG---------------------IEPEDVDTRINKRKMEIEVMQLCSILEATSD---GIA 466
                                  IE E ++ +  +R++      L     A SD   G+ 
Sbjct: 616 ELNSQLEQRIIERTEQLQRAKKNIEQELLERKKLERELRKREQLLDGFFNAASDAKVGMC 675

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
           I +     L  N+A++ + GY +ED L +     L       +      ++  +    LE
Sbjct: 676 INDLNFRFLKINQALADINGYSIEDHLGRNLDDVL-PELAPTLKPLWENVIDSNQPINLE 734

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKES 582
              +  +    +    +    +   +         + +I+E K+ + +    +    +  
Sbjct: 735 ISAVVPSSRGVMRYWSVAYFPILAENENLIGIGAVVIEITESKRLELE----QAKLIEIL 790

Query: 583 SHKSDFLARVS 593
               D +A  S
Sbjct: 791 EATPDIIATAS 801



 Score = 89.3 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 42/417 (10%), Positives = 112/417 (26%), Gaps = 15/417 (3%)

Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL---RMKNK 239
           +V   + +   R   +   ++ + L ++             I         L     +  
Sbjct: 221 LVRQQQEELIRRREIETELRQQTQLLDLSDEAIIALNINRKIIYWNRGAERLYGWTKEEA 280

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
           +    E        +  E       E+     +      +      +      +++    
Sbjct: 281 LGQKIESMLQTQFPISLEAAHQTIIEQEYWEGELLHIRRDGQPLIVESRQVLQRDSKGNP 340

Query: 300 FEYLSHRNHPSLSAYFDEG----ENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKY 354
              L      +     +E     E     T++   I  + ++     F ++ +   ++  
Sbjct: 341 EIILETNRDLTRRKQLEENLKINEERLRLTLELTGIGSWDFNLKTEAFISSDNVFRMSGL 400

Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
                         L      SD+       L  + +       +   +         + 
Sbjct: 401 DPKTAAPSY----ALWLEQIHSDDRERVEQKLQEAIQNQTPLEVKYRVVHPKGH-ICWIL 455

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII 474
                  +Q  +     GI  +    +  +  ++     L    +    G+ +++R    
Sbjct: 456 SKASFICDQTGQATRMLGIWMDITAQKETEFALKQGKETLKLFFKYVPAGVVVVDRNMCY 515

Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
           L  ++     +    +D L+      +    P          +     +  E++ + S  
Sbjct: 516 LMASQRWLDDYKISSDDTLQGHSLYQIVPEIPPKWRQIHQLCVKGATEKCDEELFIRSDG 575

Query: 535 EEKLLSLRIIIKK--LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
            E+ L   I+     L   +   +   +ISE KQ +  L       E+    +++ L
Sbjct: 576 TEQWLRWEIVPWYDNLGKEAGIIIFTENISERKQAEIALQELNSQLEQRIIERTEQL 632



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 61/166 (36%), Gaps = 7/166 (4%)

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
           Q    + Q  +  +  +  I +R++E E+ Q   +L+ + + I  +N    I+  NR   
Sbjct: 211 QVAIAIQQALLVRQQQEELIRRREIETELRQQTQLLDLSDEAIIALNINRKIIYWNRGAE 270

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
           +L+G+  E+ L +     L+   P  +      I+     +  E   L   ++ + L + 
Sbjct: 271 RLYGWTKEEALGQKIESMLQTQFPISLEAAHQTIIEQ---EYWEGELLHIRRDGQPLIVE 327

Query: 543 IIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
                   S         T  D++  KQ +  L   ++        
Sbjct: 328 SRQVLQRDSKGNPEIILETNRDLTRRKQLEENLKINEERLRLTLEL 373


>gi|146341839|ref|YP_001206887.1| two-component sensor histidine kinase [Bradyrhizobium sp. ORS278]
 gi|146194645|emb|CAL78670.1| putative two-component sensor histidine kinase with a ATP-binding
           domain (C-term) [Bradyrhizobium sp. ORS278]
          Length = 774

 Score =  337 bits (865), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 131/685 (19%), Positives = 257/685 (37%), Gaps = 75/685 (10%)

Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKK----GHSSVEKEKYDIFSQQSPPPHLRMKNKVS 241
              +  D  A  + L      L          H  V    + I ++      L   +++ 
Sbjct: 90  HIAMRPDRIANIEHLQALLPDLIPAWGSAPGRHVIVTGADHRILARVPVDTGLGENDRIL 149

Query: 242 SL--TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
            L  T        +        L +   +    +    +       ++    +  +    
Sbjct: 150 DLISTAQLLATPGLQGAVTEITLPNGRPAFAVSQLIKALPGRVVVIQEKLEPIWGSDAAL 209

Query: 300 FEYL-----------------SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH--GN 340
              L                             D         +++     + +    G 
Sbjct: 210 SITLSATTGFVVLILGFAFHWQSTRAREGDLINDAVRGRIDTALNRGRCGLWDWDLSRGR 269

Query: 341 LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400
           +F++N S   +    +  D+   G ++ L+++  +        ++             + 
Sbjct: 270 IFWSN-SMFAMLGLDNRTDLLTFGEVNALVNSDDIDLFAIADQLVA----GELRHID-QS 323

Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
             ++    + + +              +   GI  +  + +    K     ++L   +E 
Sbjct: 324 FRMRHTEGHWIWLRVRCELSQGTTDSGLHLIGIAVDVTEQKSLVEKTVEADLRLRDAIET 383

Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLTEILSL 519
            S+   + +    ++  N    KL   P   +     +   +E      +   L +    
Sbjct: 384 ISEAFVLWDSNNRLVLCNSHFQKLHKLPDSAVTPGTSYETVIEVGKMPEIRTRLHDNSQQ 443

Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL-------- 571
                  +       +   L +    ++      Y     DI+  K+ + KL        
Sbjct: 444 AQGG---RTFEAQLDDGSWLHIS---ERRTKDGGYVSVGTDITRIKEHEQKLVDNDLRLR 497

Query: 572 ---------------------------SHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
                                      S  K  AE+ +  KS FLA +SHE+RTPL AII
Sbjct: 498 ATVIDLQRSQSALERQAIELADLAEKYSQEKTRAEEANQTKSKFLANMSHELRTPLNAII 557

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           GFSE++ +  FG LG+ +Y EY + I  SG  +L+++ND+LD+SKIE+G+M L  EP+ L
Sbjct: 558 GFSEIMGSGMFGSLGSEKYQEYCHDILTSGQYLLEVINDILDMSKIEAGRMKLDMEPLDL 617

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724
            + ++E++ +V   A +K +++      NIP ++AD R+ KQI +N+LSNA+ FTP GG+
Sbjct: 618 AKTLAESLRVVSGRAQDKSLVLDADIEGNIP-VIADRRATKQIMVNLLSNAVKFTPEGGR 676

Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
           + + +    + +V+L + DTG+G+    L +  +PF Q+ +       G+GLGL +A+++
Sbjct: 677 VTMRSRVFED-KVVLIIADTGIGIPAQSLARLGRPFEQVESQMTKTYHGSGLGLAIARSL 735

Query: 785 VDANMGKFYIFSTPAKGTLIEIIFP 809
              + G   + S    GT++ +  P
Sbjct: 736 AQLHGGSMRLRSRLEHGTVVRVTLP 760


>gi|295112753|emb|CBL31390.1| PAS/PAC sensor signal transduction histidine kinase [Enterococcus
           sp. 7L76]
 gi|315145505|gb|EFT89521.1| PAS domain S-box [Enterococcus faecalis TX2141]
 gi|315162568|gb|EFU06585.1| PAS domain S-box [Enterococcus faecalis TX0645]
          Length = 609

 Score =  337 bits (865), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 84/418 (20%), Positives = 181/418 (43%), Gaps = 29/418 (6%)

Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
              R   I+  R +      +     ++  +         E ++    +  ME E  +L 
Sbjct: 207 GEMREQAIRIARGDYAG--KVEVHGKDELGQLAETFNQLSERIEE--AQETMEAERNRLD 262

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           S+L   +DG+   +R G +++ N     L     E+++       L+          L +
Sbjct: 263 SVLTHMTDGVIATDRRGKVITINEMALSLLNVKNENVIGTSLLELLDIEEDYT----LRK 318

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSH 573
           +L       +++ T    +++ ++ +   + +      +     +HD++E ++ + +   
Sbjct: 319 LLEEPDELLIDRSTSDREEDQMIIRVDFTMIRRESGFITGLVCVLHDVTEQEKNERE--- 375

Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
                      + +F++ VSHE+RTPLT++  + E +    +          +       
Sbjct: 376 -----------RREFVSNVSHELRTPLTSMRSYIEALSEGAW--ENPEIAPNFLKVTLEE 422

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN--EKRILIRTSFA 691
            + ++ ++NDLL++S+++SG  +L  E V+ +E ++  +    +     +K   IR  F 
Sbjct: 423 TDRMIRMINDLLNLSRMDSGNTHLQLEYVNFNELINFVLDRFDMMIENEQKNYKIRREFT 482

Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751
                +  D   V Q+  NIL+NAI ++P GG I       ++  V+  + D G+G+   
Sbjct: 483 KRDLWVELDTDKVIQVFDNILNNAIKYSPDGGVITCRL-VETHNNVVFSISDQGLGIPKK 541

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +L K  + F ++  ++     GTGLGL ++K ++ A+ G  ++ ST  +G+   I  P
Sbjct: 542 DLGKVFERFYRVDKARARAQGGTGLGLAISKEVIRAHNGSIWVESTEGEGSTFYISLP 599



 Score = 37.7 bits (86), Expect = 7.7,   Method: Composition-based stats.
 Identities = 20/143 (13%), Positives = 43/143 (30%), Gaps = 7/143 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            D  G +  I+E     +      +IG  L ++   L I+ +  +  LL+  +      +
Sbjct: 275 TDRRGKVITINEMALSLLNVKNENVIGTSLLEL---LDIEEDYTLRKLLEEPDELLIDRS 331

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               E   + + +D     I   +   +G     ++H            +      SH  
Sbjct: 332 TSDREEDQMIIRVDFTM--IRRESGFITGL--VCVLHDVTEQEKNERERREFVSNVSHEL 387

Query: 209 EIKKGHSSVEKEKYDIFSQQSPP 231
                      E     + ++P 
Sbjct: 388 RTPLTSMRSYIEALSEGAWENPE 410


>gi|254463944|ref|ZP_05077355.1| sensory box sensor histidine kinase/response regulator
           [Rhodobacterales bacterium Y4I]
 gi|206684852|gb|EDZ45334.1| sensory box sensor histidine kinase/response regulator
           [Rhodobacterales bacterium Y4I]
          Length = 755

 Score =  337 bits (865), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 104/456 (22%), Positives = 187/456 (41%), Gaps = 32/456 (7%)

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE-KANQFPENMPQNGIEPE 436
           +     V L     T +A  A LH+  W R +S  +               +       +
Sbjct: 154 HRPSAFVRLAVYAVTPLAMLAFLHSQGWERASSPQLHLAGLAMLYAAVGWALYFASRNFD 213

Query: 437 DVD-----TRINKRKMEI----------EVMQLCSILEATSDGIAIINREGIILSTNRAV 481
                       +  +E           E  +L  + E  +D   +++REG  L  N A 
Sbjct: 214 ITRANLLAQAQQQEALEAANASLKVQRAEARRLALVAENANDITRLLDREGRTLWANDAF 273

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR-QTLEKITLGSTKEEKLLS 540
           +++ GY + +   K     +    P      L  I       + L    L  +K+ +   
Sbjct: 274 TRVTGYTLAEAKGKLLGDLIR--DPDTSLEVLARISEARQAGRPLRVEILNRSKDGRTFW 331

Query: 541 LRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
           L      +  +      Y     DI+  K  + +L  A+  AE+ +  K+DFLA +SHEI
Sbjct: 332 LETNQVPMLDACGRVDSYVAIERDITAAKLHEQELEKARIAAEEGARAKADFLATMSHEI 391

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTP+  +IG ++++++       N     YA  I  S + +L ++ND+LD+SK+++  ++
Sbjct: 392 RTPMNGVIGMAQLLRDSGL----NEEQELYAGAILSSADTLLALINDVLDVSKMDAEGVS 447

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNA 715
           L            + + L++  A  K + +       +P R+  D R ++QI LN+  NA
Sbjct: 448 LSCTDFDPRACFEDTMRLLKAQAEAKGLDLLLDIKACVPARLHGDDRRIRQILLNLAGNA 507

Query: 716 IHFTPSGGQIIISTTHTSNEE---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           I FT  G Q+ ++       +   ++  V DTG+G+    L K  + F Q   +   R  
Sbjct: 508 IKFTERG-QVQVTLDAEPAGQGTGLVFSVADTGIGIPREMLSKVFERFSQADAAISRRFG 566

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           GTGLGL +++ + +A  G   + S    G+   +  
Sbjct: 567 GTGLGLAISRRLAEAMGGSISVASDLGIGSCFTVRL 602



 Score = 62.7 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/248 (7%), Positives = 53/248 (21%), Gaps = 11/248 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH--IDPNNHIGDLLKRQNTWYGK 146
           +D  G     ++   +  G    +  G  L D+       ++    I +  +       +
Sbjct: 260 LDREGRTLWANDAFTRVTGYTLAEAKGKLLGDLIRDPDTSLEVLARISEARQAGRPLRVE 319

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                 +G      ++   +P+         +    I              ++       
Sbjct: 320 ILNRSKDGRTF--WLETNQVPMLDACGRVDSY--VAIERDITAAKLHEQELEKARIAAEE 375

Query: 207 LHEIKKGHSSVEKEKYD-----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
               K    +    +       +           +  +            D L      +
Sbjct: 376 GARAKADFLATMSHEIRTPMNGVIGMAQLLRDSGLNEEQELYAGAILSSADTLLALINDV 435

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
           L   +          T    +   +     L+  ++     L       + A     +  
Sbjct: 436 LDVSKMDAEGVSLSCTDFDPRACFEDTMRLLKAQAEAKGLDLLLDIKACVPARLHGDDRR 495

Query: 322 TPETVDKC 329
             + +   
Sbjct: 496 IRQILLNL 503


>gi|46581020|ref|YP_011828.1| sensory box histidine kinase/response regulator [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|46450441|gb|AAS97088.1| sensory box histidine kinase/response regulator [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|311234704|gb|ADP87558.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris RCH1]
          Length = 1000

 Score =  337 bits (865), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 113/657 (17%), Positives = 224/657 (34%), Gaps = 37/657 (5%)

Query: 175 FSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL 234
           F GF+  G+    R  +    L +  ++    L     G       K  +F  +     L
Sbjct: 195 FLGFQLHGLAE--RFRSAAEQLRESEERWNFALEGAGDGVWDWNLAKGTLFLSRKWKEML 252

Query: 235 RMKNKVSSLT------EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288
              +              +    D         L+               +         
Sbjct: 253 GFNDDELVNDFETWRSLAHPEDIDTALATINRCLSGGTDQYEHVYRMLRKDGTACWILDR 312

Query: 289 FGTL-QNNSKESFEYLSHRNHPSLSAYFDEGENLTPE----TVDKCPIPFFV-YSHGNLF 342
              + ++       ++      +     +E    + E    T+             G + 
Sbjct: 313 GRVVARDAEGNPVRFIGTHTDITAQKLSEESARASGENLAVTLSSIGDAVIATDRDGRVT 372

Query: 343 YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT 402
             NP    LT +     I        ++ +   +  +   PV         ++ S     
Sbjct: 373 LMNPVAEKLTGWTQSSAIGKPVSAVFVIISA-TTKQSLPSPVEEVLRTGRTVSLSNDTTL 431

Query: 403 IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
           +  +      +        +   E      +  +       KRK+     +  + L+   
Sbjct: 432 VSRSGREFQ-IADSAAPIHDASGEMSGVVMVFTDVTQQYRFKRKLAESEHRFRTALDEAP 490

Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522
             + + +  G +L  NR  S L GY    +        L        + +          
Sbjct: 491 FPVLLHDARGDVLMLNRQWSLLTGYEPSQVPTIHRWKDLSDPEIDPESRF------SGQA 544

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPF--SSCYSLTM--HDISEWKQEKNKLSHAKKIA 578
           ++ +        +  L +  + + +L       +   +   D++   +    L  +KK A
Sbjct: 545 RSTDGEQNIRCSDGTLRTWNVSMIELGAMPDGRHITMLAAVDVTVQSETMRALQRSKKAA 604

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
           E  ++ K++FLA +SHEIRTPL  I+G  +++ +       +    +Y +    S   + 
Sbjct: 605 ESANAAKTEFLANMSHEIRTPLNGIMGMMQLLVSTPL----DDEQKQYVSNAISSSGRLS 660

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-I 697
            +++D+LD+S+IE+G + L  E V+  E +     L  L     ++ +    +  +P+ I
Sbjct: 661 QLLSDVLDLSRIEAGGLVLRDECVTPSELLDAIKDLFTLGTRSSQVELALEISPGLPQHI 720

Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS-----NEEVILRVRDTGVGMTNYE 752
           L D   ++QI  N++ NA+ FT  G  I +     +      + +++ V DTG+G+    
Sbjct: 721 LLDGGRLRQILFNLVGNALKFTEKG-HIHVRLDELAIHGGMRQLLLISVEDTGIGIPQGA 779

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +     PF Q+  S   R  G GLGL + + +V A  G   I S   +GT I +  P
Sbjct: 780 MRDIFNPFYQVDGSHVRRQGGVGLGLSIVRRLVIAMGGALCIDSAEGEGTRIHLSLP 836



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 34/374 (9%), Positives = 80/374 (21%), Gaps = 32/374 (8%)

Query: 96  KEISEELPKTIGNYAFKMIG--MRLCDVSDILHIDPNNH-IGDLLKRQ-NTWYGKTTLWP 151
             +S +  + +G    +++        ++    ID     I   L    + +     +  
Sbjct: 242 LFLSRKWKEMLGFNDDELVNDFETWRSLAHPEDIDTALATINRCLSGGTDQYEHVYRMLR 301

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL-DKKFSHLHEI 210
            +GT  ++      +            R  G               +   +     L  I
Sbjct: 302 KDGTACWILDRGRVVA-RDAEGNPV--RFIGTHTDITAQKLSEESARASGENLAVTLSSI 358

Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNK------------VSSLTEYYAHKDDVLKTEK 258
                + +++                               + S T   +    V +  +
Sbjct: 359 GDAVIATDRDGRVTLMNPVAEKLTGWTQSSAIGKPVSAVFVIISATTKQSLPSPVEEVLR 418

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
                S  +                +           S     +              E 
Sbjct: 419 TGRTVSLSNDTTLVSRSGREFQIADSAAPIHDASGEMSGVVMVFTDVTQQYRFKRKLAES 478

Query: 319 ENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
           E+     +D+ P P  ++   G++   N  + LLT Y+      I         +    D
Sbjct: 479 EHRFRTALDEAPFPVLLHDARGDVLMLNRQWSLLTGYEPSQVPTIHRWKD---LSDPEID 535

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
             +        +D            I+ +            E                + 
Sbjct: 536 PESRFSGQARSTDGE--------QNIRCSDGTLRTWNVSMIELGAMPDGRHITMLAAVDV 587

Query: 438 VDTRINKRKMEIEV 451
                  R ++   
Sbjct: 588 TVQSETMRALQRSK 601



 Score = 65.4 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 24/248 (9%), Positives = 63/248 (25%), Gaps = 6/248 (2%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP----NNHIGDLLKRQNTWY 144
            D  G +  ++    K  G      IG  +  V  I+         + + ++L+   T  
Sbjct: 365 TDRDGRVTLMNPVAEKLTGWTQSSAIGKPVSAVFVIISATTKQSLPSPVEEVLRTGRTVS 424

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
                  +  +     I  +A PI+  + E SG     +          +      + +F
Sbjct: 425 LSNDTTLVSRSGREFQIADSAAPIHDASGEMSGV--VMVFTDVTQQYRFKRKLAESEHRF 482

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
               +       +   + D+         L         T +        + +     + 
Sbjct: 483 RTALDEAPFPVLLHDARGDVLMLNRQWSLLTGYEPSQVPTIHRWKDLSDPEIDPESRFSG 542

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
           +  S   +++    +    T       L          +      ++ +        + +
Sbjct: 543 QARSTDGEQNIRCSDGTLRTWNVSMIELGAMPDGRHITMLAAVDVTVQSETMRALQRSKK 602

Query: 325 TVDKCPIP 332
             +     
Sbjct: 603 AAESANAA 610


>gi|332977344|gb|EGK14129.1| sensor histidine kinase ResE [Desmospora sp. 8437]
          Length = 600

 Score =  337 bits (865), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 82/413 (19%), Positives = 166/413 (40%), Gaps = 30/413 (7%)

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK--RKMEIEVMQLCSI 457
           +   +     +           +   + +    +    +  ++ +  + +  E  QL SI
Sbjct: 207 IQMKRGAERMARGEFSARVPVRSHEWDEIGDLAVAFNRMAGQLEESIQALSREKEQLASI 266

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
           L + +DG+  ++ +G ++ TN    K      E+     +        PS +  +  ++L
Sbjct: 267 LRSMADGVITLDAKGHVIVTNPPAEKFLSDWREEGGGSLW--------PSPLEQFFHQVL 318

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI 577
             +     +    G T    +  L     ++         + D++E ++           
Sbjct: 319 EGEREVFGDIDVHGRTWALVMAPLYAGPDEIR---GAVAVLRDVTEERRM---------- 365

Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
                  + DF+A VSHE+RTPL+ + G+SE + +            E    I      +
Sbjct: 366 ----DKLRKDFVANVSHELRTPLSMLQGYSEALLDDI--AASPEDQREITRVIHDESLRM 419

Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697
             +V +LLD++++E+G + L    V + E +       Q  A E+++ ++    + +  +
Sbjct: 420 GRLVRELLDLARMEAGHIRLEPSTVHVPELIRRVYRKFQAIAREEKVALQVDLPDGMDPV 479

Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757
             D   V+Q+  N+  NAI  TP GG++ +         V L V DTG G+   +L    
Sbjct: 480 QWDEDKVEQVLTNLTDNAIRHTPEGGRVTLRALFAEKG-VQLIVEDTGSGIPQEDLPFVF 538

Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           + F +   ++     GTGLGL + K + +A+ G   + S   +GT   +  P+
Sbjct: 539 ERFYKADKARTRGQGGTGLGLAIVKHIAEAHAGSVSVKSKEGEGTRFTVQLPV 591


>gi|220907213|ref|YP_002482524.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219863824|gb|ACL44163.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 1965

 Score =  337 bits (865), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 119/802 (14%), Positives = 248/802 (30%), Gaps = 88/802 (10%)

Query: 86   TWN-IDAHGYLKEISEELPKTIGNYAF--KMIGMRLCDVSDILHID-PNNHIGDLLKRQN 141
             W  + A   +   S+E  + +G               V            +   L    
Sbjct: 1042 MWQWLKAENRMI-WSDETFRMLGYEPGQCSASHQAWVQVVHPDDRAIAEQAVQRSLAENC 1100

Query: 142  TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
              Y +  +   +G+     +       Y    + +G  G  I              +R +
Sbjct: 1101 PLYSEYRVCLPDGSIR--WLADIGQVTYDEAGDQTGTIGIQI--DISQRKQSELERERSE 1156

Query: 202  KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP-----------HLRMKNKVSSLTEYYAHK 250
               +          ++                             ++  V ++   +   
Sbjct: 1157 AILNAFLTASPIALTLLDRDLRFIYANEALAAVNGLPLSEHLGRTLEEVVPTMAPQFGPM 1216

Query: 251  DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310
               +   + P+L  E      +                                      
Sbjct: 1217 LRQIIATQTPVLNLE---FSGEVQPGLYRQTIANHFPVCLPDGEVLGVGVTVTDISELKR 1273

Query: 311  LSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY-ANPSFLLLTKYKSVDDIEIAGGLSTL 369
            + A   + E      +       +  +        +P +  +  Y+  +  E    L   
Sbjct: 1274 VEAELRQSEERLSLALKAANQGLYDLNLQTGQAIVSPEYARMLGYEPEELEETTARLRDR 1333

Query: 370  LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
            L    L+  + +    +     T      R  TI         ++       +Q    + 
Sbjct: 1334 LHPDDLATVDRVYQEYVANLH-TEYRVEFRQRTIT--GGWVWILSIGKIVNWDQDGNPLR 1390

Query: 430  QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL----- 484
              G   +  D +  ++ ++    +L  + + T +   +++ +  +   N+   +L     
Sbjct: 1391 MLGTHTDISDRKQAEQALQQHSERLNLLYQTTRE---LLSAKQPLDLMNQLFERLSAQMQ 1447

Query: 485  ------FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
                  F   + +  ++   +     +      +    L   +   + +        +  
Sbjct: 1448 LHYYYHFKLCMREGRQQLRLMNYSGLSVEQAEEFAWIELGQSMCGLVAQERRQIVLNQTD 1507

Query: 539  LSL-------------------------------RIIIKKLPFSSCYSLTMHDISEWKQE 567
            ++                                   + +  F+      +  ISE    
Sbjct: 1508 IAAHANAHKICLMGVSAYVGHPLIVNGQLLGTLSFASLTRTQFTPAEVNLLQAISEQVAI 1567

Query: 568  KNK-------LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
              +       L    +   + +  K +FLA +SHE+R+PL  I+G+++++++Q F P   
Sbjct: 1568 ALERAELVASLEQQTEDLARANRVKDEFLAVLSHELRSPLNPILGWTKLLQSQSFSP--- 1624

Query: 621  PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
             +  +    I+R+  L   ++ DLLD+S+I  GKM L+   V+L   +  A+  V+L A 
Sbjct: 1625 DKAAKALATIERNAKLQAQLIEDLLDVSRILQGKMVLNVTSVNLGSVIEAALETVRLAAE 1684

Query: 681  EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
             K I + T     I  IL D   ++QI  N+L+NA+ FTP GGQ+ +           L+
Sbjct: 1685 AKAIQLETLMEPEIDPILGDPARLQQIVWNLLTNAVKFTPQGGQVTVRLQRVDT-FAQLQ 1743

Query: 741  VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPA 799
            V+DTG G++   L      F Q   +   +  G GLGL + + + + + G     S    
Sbjct: 1744 VQDTGKGISPAFLPHVFDYFRQEDGTTTRKFGGLGLGLAIVRHLTEQHGGTVAADSPGEG 1803

Query: 800  KGTLIEIIFPLY----DTSHPH 817
             G    I  PL     +T+ P 
Sbjct: 1804 LGATFTIRLPLQAKATETADPQ 1825



 Score =  162 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 75/643 (11%), Positives = 166/643 (25%), Gaps = 58/643 (9%)

Query: 44   PCHDSFEQS---NFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISE 100
            P           +  D  Q          SE  +         +  W  DA G     + 
Sbjct: 872  PSASQPYDHVLVSLLDITQRKQVEAALQASEERYRHLAEAMP-QIVWTTDAQGLATYFNP 930

Query: 101  ELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQNTWYGKTTLWPIEGTNLYV 159
                  G  A + +G+   +       D         ++   ++  +  L   +G  +Y 
Sbjct: 931  NWYGYTGLTAAESMGLESPNALHPEDRDRVLQQWLQAVEAGTSYEIEIRLRRWDG--VYR 988

Query: 160  PIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS-HLHEIKKGHSSVE 218
                  LP+     E       G           +A   + +++ S  L   + G     
Sbjct: 989  WFLCRGLPVRDPRGEII--SWVGTNTDIDDQKHIQAALHQSEERLSLALRSAQAGMWQWL 1046

Query: 219  KEKYDIFSQQSPPPHLRMKNKVSSLTEYYA-----HKDDVLKTEKYPLLTSEESSLPEQE 273
            K +  +         L  +    S +           D  +  +      +E   L  + 
Sbjct: 1047 KAENRMIWSDETFRMLGYEPGQCSASHQAWVQVVHPDDRAIAEQAVQRSLAENCPLYSEY 1106

Query: 274  DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK----C 329
                 + +            + + +    +  +   S     +     +   ++      
Sbjct: 1107 RVCLPDGSIRWLADIGQVTYDEAGDQTGTIGIQIDISQRKQSELERERSEAILNAFLTAS 1166

Query: 330  PIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388
            PI    +       YAN +   +      + +              +         ML +
Sbjct: 1167 PIALTLLDRDLRFIYANEALAAVNGLPLSEHLGRT-------LEEVVPTMAPQFGPMLRQ 1219

Query: 389  SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
               T         + +             F       E +       +  + +  + ++ 
Sbjct: 1220 IIATQTPVLNLEFSGEVQPGLYRQTIANHFPVCLPDGEVLGVGVTVTDISELKRVEAELR 1279

Query: 449  IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP--FTVFLEQNTP 506
                +L   L+A + G+  +N +      +   +++ GY  E++          L  +  
Sbjct: 1280 QSEERLSLALKAANQGLYDLNLQTGQAIVSPEYARMLGYEPEELEETTARLRDRLHPDDL 1339

Query: 507  SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR-----IIIKKLPFSSCYSLTMHDI 561
            + ++    E ++  L           T     + +      +   +         T  DI
Sbjct: 1340 ATVDRVYQEYVAN-LHTEYRVEFRQRTITGGWVWILSIGKIVNWDQDGNPLRMLGTHTDI 1398

Query: 562  SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
            S+ KQ +  L    +          + L+      + PL         + NQ F  L   
Sbjct: 1399 SDRKQAEQALQQHSERLNLLYQTTRELLSA-----KQPL--------DLMNQLFERLSAQ 1445

Query: 622  RYIEY---ANYIDRSGNLVLDI-------VNDLLDISKIESGK 654
              + Y        R G   L +       V    + + IE G+
Sbjct: 1446 MQLHYYYHFKLCMREGRQQLRLMNYSGLSVEQAEEFAWIELGQ 1488



 Score =  130 bits (327), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 59/538 (10%), Positives = 149/538 (27%), Gaps = 33/538 (6%)

Query: 72   NTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN 131
              F          F   + +   + ++++   +  G      +   L  +          
Sbjct: 778  EDFAQYLAEHP-EFVRQMASSVRIHDVNQAALQMFGAKDKAELLSSLNQIFVPETEAAFI 836

Query: 132  HIGDLLKRQNT-WYGKTTLWPIEGTNLYVPIDL---AALPIYSRNREFSGFRGFGIVHVN 187
                 +    T +  +T +  ++G  L V   +   +A   Y              +   
Sbjct: 837  GELLAIAEGKTYFAAETVVQTLQGERLRVWFTITFPSASQPYDHV--------LVSLLDI 888

Query: 188  RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS---PPPHLRMKNKVSSLT 244
                   A  +  ++++ HL E           +               L     +   +
Sbjct: 889  TQRKQVEAALQASEERYRHLAEAMPQIVWTTDAQGLATYFNPNWYGYTGLTAAESMGLES 948

Query: 245  EYYAHKDDVLKTEKYPLLTSEESSLPEQE-DFHTINLNQYTKKQYFGTLQNNSKESFEYL 303
                H +D  +  +  L   E  +  E E      +            +++   E   ++
Sbjct: 949  PNALHPEDRDRVLQQWLQAVEAGTSYEIEIRLRRWDGVYRWFLCRGLPVRDPRGEIISWV 1008

Query: 304  SHRNHPS----LSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVD 358
                       + A   + E      +       + +    N    +     +  Y+   
Sbjct: 1009 GTNTDIDDQKHIQAALHQSEERLSLALRSAQAGMWQWLKAENRMIWSDETFRMLGYEP-- 1066

Query: 359  DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
                              D+ AI    + RS        +  + +     +   +  I  
Sbjct: 1067 --GQCSASHQAWVQVVHPDDRAIAEQAVQRSLAENCPLYSE-YRVCLPDGSIRWLADIGQ 1123

Query: 419  EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
               ++  +     GI+ +    + ++ + E     L + L A+   + +++R+   +  N
Sbjct: 1124 VTYDEAGDQTGTIGIQIDISQRKQSELERERSEAILNAFLTASPIALTLLDRDLRFIYAN 1183

Query: 479  RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
             A++ + G P+ + L +     +           L +I++      L     G  +    
Sbjct: 1184 EALAAVNGLPLSEHLGRTLEEVV-PTMAPQFGPMLRQIIATQTP-VLNLEFSGEVQPGLY 1241

Query: 539  LSLRII--IKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
                       LP        +T+ DISE K+ + +L  +++         +  L  +
Sbjct: 1242 RQTIANHFPVCLPDGEVLGVGVTVTDISELKRVEAELRQSEERLSLALKAANQGLYDL 1299



 Score =  120 bits (302), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 38/552 (6%), Positives = 114/552 (20%), Gaps = 71/552 (12%)

Query: 92   HGYLKEISEELPKTIGNYAFKMIGMRLCDVS---DILHIDPNNHIGDLL--KRQNTWYGK 146
                   + ++   +G  + ++  M    ++       ++              +   G 
Sbjct: 498  EQRNVYTNRQITDFLGYTSEQVQAMGANAIATLIHPDDLEQILSYFAAFQHAADDVVLGI 557

Query: 147  TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                             + +   + +       G  I              +  +     
Sbjct: 558  EYRAHHANGEWRWMYSQSVVFNRTVDGIPRQLLGVAI--DITDRKRSEQALQESEAWTRL 615

Query: 207  LHEIKKGHSSVEKEKYDIFSQQ--------SPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
              ++ +        + ++             P   + +   +     + A ++ V     
Sbjct: 616  AAQVAQLGGWRLHLETNLVEIDQRMGQIWGEPENTVLLPLPIVLERIHPADRERVTHAVT 675

Query: 259  YPLLTSEESSLPEQEDFHTINLNQYT-------KKQYFGTLQNNSKESFEYLSHRNHPSL 311
              L          +      + ++         + +  GT +         L   +    
Sbjct: 676  AALDPQSLGVYETEYRIVWKDGSERWVLAKGQARFEGEGTARRTVDFFGTALDITDRKQA 735

Query: 312  SAYFDEGENLTPETVDKCPIPFFVYSHG-------------------------------- 339
             A     E       +   +  +                                     
Sbjct: 736  EAALAAQEQRYRYIFESVSVAIWEEDFSAVKAAINQLQGSGIEDFAQYLAEHPEFVRQMA 795

Query: 340  ---NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA 396
                +   N + L +   K   ++  +      L+   + +  A     L          
Sbjct: 796  SSVRIHDVNQAALQMFGAKDKAELLSS------LNQIFVPETEAAFIGELLAIAEGKTYF 849

Query: 397  SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
            +A         E       I F  A+Q            +    +  +  ++    +   
Sbjct: 850  AAETVVQTLQGERLRVWFTITFPSASQ--PYDHVLVSLLDITQRKQVEAALQASEERYRH 907

Query: 457  ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
            + EA    +   + +G+    N       G    + +       L       +     + 
Sbjct: 908  LAEAMPQIVWTTDAQGLATYFNPNWYGYTGLTAAESMGLESPNALHPEDRDRVLQQWLQA 967

Query: 517  LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLS 572
            +        E        +            +         +  T  DI + K  +  L 
Sbjct: 968  VEAGTS--YEIEIRLRRWDGVYRWFLCRGLPVRDPRGEIISWVGTNTDIDDQKHIQAALH 1025

Query: 573  HAKKIAEKESSH 584
             +++        
Sbjct: 1026 QSEERLSLALRS 1037



 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 57/558 (10%), Positives = 128/558 (22%), Gaps = 66/558 (11%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYG 145
           W       L   +       G     +IG  + +    L   P   H  D++    +   
Sbjct: 370 WQDPGSFRLLLANPAASAATGFDFEPVIGRTMAESFPHLLQTPLVQHYLDVVHTGRSLDL 429

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
               +  +G    +   L A P+        G                 +  +   +   
Sbjct: 430 GEVSYSEDGIATGIY-SLKAFPL-------PGHCLGLAFENITPRKQIESQLQESQRFNQ 481

Query: 206 HLHEIKKGHSSV----------EKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255
            + E   G   V             +   F   +      M     +   +    + +L 
Sbjct: 482 QIAEAMPGVVFVHDLVEQRNVYTNRQITDFLGYTSEQVQAMGANAIATLIHPDDLEQILS 541

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE-----YLSHRNHPS 310
                   +++  L  +   H  N                            +   +   
Sbjct: 542 YFAAFQHAADDVVLGIEYRAHHANGEWRWMYSQSVVFNRTVDGIPRQLLGVAIDITDRKR 601

Query: 311 LSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
                 E E  T        +  + ++   NL   +     +        +     +   
Sbjct: 602 SEQALQESEAWTRLAAQVAQLGGWRLHLETNLVEIDQRMGQIWGEPENTVLLPLPIV--- 658

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
           L+    +D   +   +    D   +      + I W   +   +      +         
Sbjct: 659 LERIHPADRERVTHAVTAALDPQSLGVYETEYRIVWKDGSERWVLAKGQARFEGEGTARR 718

Query: 430 ---QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN----------REG---- 472
                G   +  D +  +  +  +  +   I E+ S  I   +           +G    
Sbjct: 719 TVDFFGTALDITDRKQAEAALAAQEQRYRYIFESVSVAIWEEDFSAVKAAINQLQGSGIE 778

Query: 473 --------------------IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
                                I   N+A  ++FG   +  L           T +     
Sbjct: 779 DFAQYLAEHPEFVRQMASSVRIHDVNQAALQMFGAKDKAELLSSLNQIFVPETEAAFIGE 838

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRII-IKKLPFSSCYSLTMHDISEWKQEKNKL 571
           L  I         E +      E   +   I             +++ DI++ KQ +  L
Sbjct: 839 LLAIAEGKTYFAAETVVQTLQGERLRVWFTITFPSASQPYDHVLVSLLDITQRKQVEAAL 898

Query: 572 SHAKKIAEKESSHKSDFL 589
             +++     +      +
Sbjct: 899 QASEERYRHLAEAMPQIV 916


>gi|83644997|ref|YP_433432.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83633040|gb|ABC29007.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 905

 Score =  337 bits (865), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 88/373 (23%), Positives = 163/373 (43%), Gaps = 23/373 (6%)

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
               +++    +L +I E T DG+  +  EG I + N AV  LFGY   ++      V +
Sbjct: 552 ERTAELKHSEQRLRAIYEHTPDGMLTVTEEGNITAVNPAVENLFGYACSNLAGLNIRVLI 611

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMH 559
                S +      +        L+    G  +  +   L +    L  ++   Y   + 
Sbjct: 612 PDYQASTVESSQESVALNTGPGYLQ----GLRRNGQDFPLELQTVCLSQTTPASYLCIVR 667

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           D++E  + +                K +F++ +SHE+RTPLTAI G    + + +     
Sbjct: 668 DVTERAEAE--------------RIKDEFISTISHELRTPLTAINGSLA-LLDAKVAMAA 712

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
             +  +      R+ + +L++VN +LD+ K+ SG+M L     +L + VS+ ++L Q  A
Sbjct: 713 PDKQAQMIGIARRNTDRLLNLVNAILDLKKMASGEMTLQLSHFNLAQLVSDVLALNQGLA 772

Query: 680 NEKRILIRTSFANN-IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738
           +   +       ++ +  + AD   + Q+  N++SNA  F+P   +I++S T   +    
Sbjct: 773 HNADVSFSLQIPSDCVIVVEADEERLTQVLTNLISNAAKFSPPHTEIVVSVTLEDSI-AR 831

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           + V D G G+    L +    F Q  +S      GTGLGL ++KA+++ + GK    + P
Sbjct: 832 VSVTDKGPGVPPEFLNRIFGRFAQADSSNTRNKSGTGLGLNISKAIIERHGGKIGFHNNP 891

Query: 799 AKGTLIEIIFPLY 811
             G       P +
Sbjct: 892 GGGCTFYFELPAH 904


>gi|28900985|ref|NP_800640.1| putative sensory box sensor histidine kinase/response regulator
           [Vibrio parahaemolyticus RIMD 2210633]
 gi|260366196|ref|ZP_05778656.1| PAS domain protein [Vibrio parahaemolyticus K5030]
 gi|260879838|ref|ZP_05892193.1| putative sensory box sensor histidine kinase/response regulator
           [Vibrio parahaemolyticus AN-5034]
 gi|260894512|ref|ZP_05903008.1| putative sensory box sensor histidine kinase/response regulator
           [Vibrio parahaemolyticus Peru-466]
 gi|28809431|dbj|BAC62473.1| putative sensory box sensor histidine kinase/response regulator
           [Vibrio parahaemolyticus RIMD 2210633]
 gi|308086398|gb|EFO36093.1| putative sensory box sensor histidine kinase/response regulator
           [Vibrio parahaemolyticus Peru-466]
 gi|308091833|gb|EFO41528.1| putative sensory box sensor histidine kinase/response regulator
           [Vibrio parahaemolyticus AN-5034]
 gi|308114853|gb|EFO52393.1| PAS domain protein [Vibrio parahaemolyticus K5030]
          Length = 873

 Score =  337 bits (865), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 99/376 (26%), Positives = 171/376 (45%), Gaps = 12/376 (3%)

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
           +  ++ QL  + E   D I I + +G I   N A  +L  Y +E+++ K     L+    
Sbjct: 234 LSAKISQLAEVAEHARDTIIITHPDGTIAWVNSAFEQLTEYSLEEVVGKSPGELLQGEDT 293

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDIS 562
                 L    S+     +    L  TK ++   + + +  +   +     +     DI+
Sbjct: 294 DANTVALLS-QSVRSHSPVRVEILNYTKSQRPYWVELELSPVFDENGELLRFIAVERDIT 352

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           + ++ + +LS A   ++K +  KS+FLA +SHEIRTP+ AI+G SE++            
Sbjct: 353 DRREMEKRLSSALDKSKKATQAKSEFLANMSHEIRTPMNAIMGISEILLENENRREP--- 409

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             E    + +S N ++ I+ND+LD SK+E+GK+ L  E   L   V    +L    A++K
Sbjct: 410 -RELLLLLHKSANNLVTIINDILDYSKVEAGKLTLVEEEFDLRSLVESCTALCAYQADKK 468

Query: 683 RILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
            + +       +  ++  D   + QI LN++ NA+ FT  G  +++    +        V
Sbjct: 469 NLKLLVDMPLAMNTVVVGDKGRINQILLNLIGNAVKFTDEG-HVLLKVRESELGF-DFSV 526

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            DTG+G+    L   M  F Q+  S   R EGTGLGL ++K ++    G+  + S    G
Sbjct: 527 TDTGIGIPEDRLTHIMDKFEQVDTSATRRHEGTGLGLAISKRLISMYNGELCVRSDFGNG 586

Query: 802 TLIEIIFPLYDTSHPH 817
           +       L   S PH
Sbjct: 587 SCFSFSLQLPKRSQPH 602



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 12/140 (8%), Positives = 38/140 (27%), Gaps = 6/140 (4%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTWYGKTT 148
             G +  ++    +       +++G    ++      D N    +   ++  +    +  
Sbjct: 257 PDGTIAWVNSAFEQLTEYSLEEVVGKSPGELLQGEDTDANTVALLSQSVRSHSPVRVEIL 316

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
            +       +V ++L+  P++  N E    R   +        +          K     
Sbjct: 317 NYTKSQRPYWVELELS--PVFDENGEL--LRFIAVERDITDRREMEKRLSSALDKSKKAT 372

Query: 209 EIKKGHSSVEKEKYDIFSQQ 228
           + K    +    +       
Sbjct: 373 QAKSEFLANMSHEIRTPMNA 392



 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/134 (14%), Positives = 48/134 (35%), Gaps = 7/134 (5%)

Query: 321 LTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
              E  +       + +  G + + N +F  LT+Y   + +  + G   LL      D +
Sbjct: 240 QLAEVAEHARDTIIITHPDGTIAWVNSAFEQLTEYSLEEVVGKSPG--ELLQG---EDTD 294

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
           A    +L +S R+       +     ++     +        ++  E +    +E +  D
Sbjct: 295 ANTVALLSQSVRSHSPVRVEILNYTKSQRPY-WVELELSPVFDENGELLRFIAVERDITD 353

Query: 440 TRINKRKMEIEVMQ 453
            R  ++++   + +
Sbjct: 354 RREMEKRLSSALDK 367


>gi|298527776|ref|ZP_07015180.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298511428|gb|EFI35330.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 949

 Score =  337 bits (865), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 95/491 (19%), Positives = 182/491 (37%), Gaps = 25/491 (5%)

Query: 332 PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR 391
              V   G +   N +          D I        L            +        +
Sbjct: 336 ALLVDFDGTILALNKAVARAFGTTP-DKIAGCSAFKFL---------EWERFEYFMVKVQ 385

Query: 392 TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV 451
             +     L   +        +   P  + +   +         +  +    + ++    
Sbjct: 386 EVLCTGKPLRFNENVGNVHFDVQVSPVVEPS--GKAFQAVFYLNDITEVVQAEEELHRSW 443

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
            +LC+++++    +   +  G  +  N+   ++ GY  E++L  P    +      +   
Sbjct: 444 ARLCAVVDSMPVLVHAHDEAGNFVFWNKESERVLGYTAEEMLNNPDAFEILYTEKGLRKK 503

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLR--IIIKKLPFSSCYSLTMHDISEWKQEKN 569
            L      D +          +   K +          +     +   + D++E K  + 
Sbjct: 504 ALKCWADYDGKTPCTLEVKDKSGCIKTIEWHRLSSNYPIAGWKDWEAGL-DVTEKKAGER 562

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  A    EK +  KS FLA +SHE+RTP++ +IG S ++         +         
Sbjct: 563 QLLKAIAETEKANQLKSRFLANISHEVRTPISGVIGLSSMLLKTS----ADDDQKRMIQN 618

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I      +L I+N++LD SK+ESG  +L      LD       + +     EK +  +  
Sbjct: 619 IANLSEYLLQIINEILDFSKLESGSYSLEQHDFDLDSMFESIAAALCSQVQEKNVEFKVL 678

Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH----TSNEEVILRVRDT 744
             +++P  +  D  S+K+I +N+ +NA+ FT +G  +I+  +         E++  V DT
Sbjct: 679 IEDDVPVHLRGDGYSLKRILVNLTANAVKFTDAG-NVILRASLLNRSKDRLEILFVVFDT 737

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           GVG+     E   +PF Q       R  GTGLGL + K++V+   G  ++ STP +G+  
Sbjct: 738 GVGVPAAIQETIFEPFTQAEGGFSRRYGGTGLGLAICKSLVEMMGGHIWMESTPGEGSSF 797

Query: 805 EIIFPLYDTSH 815
            +  P      
Sbjct: 798 FVRIPFEPAEA 808



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 38/317 (11%), Positives = 91/317 (28%), Gaps = 44/317 (13%)

Query: 315 FDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDI-------------E 361
            ++ E +    V   P  F++     + Y +P + ++   + +D +             +
Sbjct: 153 LEQTEKIFLHLVQYIPSVFWLREKNRMLYVSPGYEMIWG-RPLDALFNDMEHFYRSVHVK 211

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS----------- 410
                   L     S ++      + R +        R + I  +               
Sbjct: 212 DLDWAFKCLHEDFFSKHSIELEFRIVRPEGAVRWVRIRSYPIFEDGSVVRRAGIAEDITS 271

Query: 411 ----------LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
                              K      +     +E +  D +   +K+        S +++
Sbjct: 272 EKAMLGELDRYRFHLDEMVKEKTVRLSCLNQILENDVEDRKKLHKKLIKSNALFRSFVDS 331

Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520
                 +++ +G IL+ N+AV++ FG   + I       FLE          + E+L   
Sbjct: 332 FIHPALLVDFDGTILALNKAVARAFGTTPDKIAGCSAFKFLEWERFEYFMVKVQEVLCTG 391

Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM--HDISEWKQEKNKLSHAKKIA 578
                 +             +++     P    +      +DI+E  Q + +L  +    
Sbjct: 392 KPLRFNENVGNVH-----FDVQVSPVVEPSGKAFQAVFYLNDITEVVQAEEELHRSWARL 446

Query: 579 EKESSHKSDFLARVSHE 595
                     +   +H+
Sbjct: 447 CAVVDSMPVLVH--AHD 461


>gi|194016316|ref|ZP_03054930.1| sensor protein YycG [Bacillus pumilus ATCC 7061]
 gi|194011789|gb|EDW21357.1| sensor protein YycG [Bacillus pumilus ATCC 7061]
          Length = 612

 Score =  337 bits (865), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 87/434 (20%), Positives = 169/434 (38%), Gaps = 32/434 (7%)

Query: 392 TCIAASARLHTIQWNRENSLAMT--FIPFEKANQFPENMPQNGIEPEDVDTRINKRKM-- 447
                    H I   R+ ++ +       +      + + Q       +   + + ++  
Sbjct: 200 GIFIFRTITHPISDMRKQAIELAKGNFSRKVRKYGHDEIGQLATTFNHLTRELEEAQLMT 259

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
           E E  +L S++   +DG+   N+ G I+  N    +L     E  L  P T  L      
Sbjct: 260 EGERKKLSSVIAYMTDGVIATNQNGAIILLNSPALELLNVSRETALEMPITSLLGLEDTH 319

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWK 565
                +           +E        +  +L +   + +            ++D++E +
Sbjct: 320 TFEDLVEN----QDSMLIEIE---REDQLSVLRVNFSVIQKEHGKIDGLIAVIYDVTEQE 372

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           +   +              + +F+A VSHE+RTPLT +  + E +     G         
Sbjct: 373 KIDAE--------------RREFVANVSHELRTPLTTMRSYLEALAEGAIG--DKELAPR 416

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           + +        ++ +VNDLL +SK +S     + E  +  + +S  I   +    E+ + 
Sbjct: 417 FLSVTQNETERMIRLVNDLLQLSKFDSKDYQFNREWTNFIKFISLVIDRFE-MTKEQHVD 475

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-TSNEEVILRVRDT 744
              +       +  D   + Q+  NI+SNA+ ++P GG I  +      N  V+  V+D 
Sbjct: 476 FIRNLPQREIYVEIDQDKITQVLDNIISNAMKYSPEGGHITFTVDLDEENGLVLFSVKDE 535

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G+   +++K  + F ++  ++  +  GTGLGL +AK MV A+ G  +  S   KGT +
Sbjct: 536 GIGIPKKDMDKIFERFYRVDKARTRKLGGTGLGLAIAKEMVQAHGGDIWADSIEGKGTTV 595

Query: 805 EIIFPLYDTSHPHD 818
               P Y+     D
Sbjct: 596 TFTLP-YNEEQEDD 608


>gi|309790727|ref|ZP_07685276.1| PAS sensor protein [Oscillochloris trichoides DG6]
 gi|308227218|gb|EFO80897.1| PAS sensor protein [Oscillochloris trichoides DG6]
          Length = 1050

 Score =  337 bits (865), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 106/388 (27%), Positives = 180/388 (46%), Gaps = 23/388 (5%)

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
             ++ + +   QL ++ +A  D   I+ R+G+I+  +   S          L +     L
Sbjct: 402 EARQALAVSEAQLRALRDAMPDMFFIMRRDGMIIDYHCPASAQLFIQPSAFLGQNVVDVL 461

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDI 561
             +        L ++ +  +  T E       +      +  I+        Y + + DI
Sbjct: 462 PPDVSQPALTALDQVSTGKVIATFEYCLSMEEERNFEARVVHIVA-----DRYMVLVRDI 516

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           ++ K  +  L  AK+ AE     KS FLA +SHEIRTPLTAIIG S ++         NP
Sbjct: 517 TQQKVAERALVQAKEAAETADRAKSTFLAHISHEIRTPLTAIIGMSSLLLESPL----NP 572

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
              E A  I+  G  +L ++ D+LD+SKIE+G+++L  +P  L      A+ LVQ  A++
Sbjct: 573 EQYENAQIINAGGKTLLSLIGDILDVSKIEAGQLDLVMQPFDLRAVCRLALDLVQQSAHD 632

Query: 682 KRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTT----HTSNEE 736
           KR+ +      ++P  ++ D   ++Q+ +N+L NA+ FT  G  + +             
Sbjct: 633 KRLRLNLQITPDLPASLIGDSGRLRQVLVNLLFNAVKFTEQG-VVELIVRGHFQAEERYH 691

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           V + V DTGVG+   ++E+  KPF QI +    +  G+GLGL +++ +V+   G   + S
Sbjct: 692 VEIIVHDTGVGIPADQIEQIFKPFVQIDHHMTEQTPGSGLGLTISQQLVELMGGTLEVSS 751

Query: 797 TPAKGTLIEIIF--------PLYDTSHP 816
           T   GT   +          P+   SHP
Sbjct: 752 TLGVGTTFTLTISMEVAEIAPVRHDSHP 779


>gi|83950384|ref|ZP_00959117.1| PAS [Roseovarius nubinhibens ISM]
 gi|83838283|gb|EAP77579.1| PAS [Roseovarius nubinhibens ISM]
          Length = 1083

 Score =  337 bits (865), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 127/798 (15%), Positives = 250/798 (31%), Gaps = 103/798 (12%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMI-GMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
            +D    +   ++         A  +  G+   D+  +          D + R+  W  + 
Sbjct: 300  LDEEYRMVLFNQPYLDLHDKIADAIKPGVYFKDILALGI--ERGQFPDAVGREEEWLAEQ 357

Query: 148  TLWP-IEG--------TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
               P  +G           +V I     P    N    G R      V        A   
Sbjct: 358  LKPPGEDGNDFEVAFSGGRWVRIYEKGTP----NGGLVGLRSDITRQVETRYRAEVAEQL 413

Query: 199  R--LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH---LRMKNKVSSLTEYYAHKDDV 253
                        E       +   +  +               +  V         +  +
Sbjct: 414  AQKSKDLLMTAIETLPDAFVLYDAEDRLVVCNRKYKEFYKKSAEAMVPGARFVDILRFGL 473

Query: 254  LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ-------YFGTLQNNSKESFEYLSHR 306
               +    L  EE  L ++   H    +   ++               +       +   
Sbjct: 474  RHGQYPEALGREEEWLADRMASHRAADDIIEQQLDDGRCLRILERPTPDGGRVSLRMDVT 533

Query: 307  NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAG- 364
                  A  ++ E    + ++  P  F++      L   N  +L L +  +         
Sbjct: 534  ELVQSRARAEQAERRLRDAINAMPAGFWLTDGDRRLTMFNDYYLSLYEKSAPAIKIGVSE 593

Query: 365  ------GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
                  GL        +            R D         L   +W R  S   +    
Sbjct: 594  EDVVAYGLERGEYPEAVGREEEWLAAHHKRMDGGEYQWEYPLQNGRWVRSYSHPTS---- 649

Query: 419  EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL--------------EATSDG 464
                    +  + GI  +  + +  + ++     +L + L              E ++D 
Sbjct: 650  --------DGGRVGIRVDITELKKQETQLLSSNEKLRTALSERDAAEKRFSDVAEISNDW 701

Query: 465  IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT--PSVMNHYLTEILSLDLR 522
                + +      +    +LFG      +    +  +E  +    V +  L         
Sbjct: 702  FWEQDADLRFTYISEGFERLFGGDTRKSIGMKISEIVEALSGLKEVADWELLFAAQDRRE 761

Query: 523  QTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIA 578
                 +    + + +   ++I        +     Y     DI+        L +A + A
Sbjct: 762  TFRNLVYPALSSDRQPKWIQISGVPFYDDNGNFAGYRGVGTDIT-------VLYNALQEA 814

Query: 579  EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP----------------- 621
            E  +  K+DFL  +SHE+RTPLT I+G++  +                            
Sbjct: 815  EAANVAKTDFLNVMSHELRTPLTVILGYNSFLAKPELLTSVKELREAASAGDLTATGAIE 874

Query: 622  -------RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                      +YA  ++ SG  +L ++N++LD++KI++GK+ +    + L+  V   +  
Sbjct: 875  HLEAVQREVGKYAGKMEDSGKHLLKLINEMLDLAKIDAGKLKIDPVDLELERVVRSVLDQ 934

Query: 675  VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
                A+EK + +  +       + AD   ++QI +N++ NA+ FT  G QI I       
Sbjct: 935  FSNAAHEKSVDLVGAIGE--LSVFADEMRLRQILINLVGNALKFTDKG-QIRIEAEVK-G 990

Query: 735  EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
             +V + VRD+G G+   E       F QI +S      GTGLGL +++ +V+   G+  +
Sbjct: 991  ADVAIHVRDSGCGIPAKEQALIFDQFNQIDSSASRAKGGTGLGLTISRRLVELQGGRISV 1050

Query: 795  FSTPAKGTLIEIIFPLYD 812
             S   KG++     P+ +
Sbjct: 1051 TSEEGKGSVFTFTLPMEE 1068



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 40/101 (39%), Gaps = 5/101 (4%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL----KRQNT 142
           W  DA      ISE   +  G    K IGM++ ++ + L         +LL     R+ T
Sbjct: 703 WEQDADLRFTYISEGFERLFGGDTRKSIGMKISEIVEALSGLKEVADWELLFAAQDRRET 762

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI 183
           +        +        I ++ +P Y  N  F+G+RG G 
Sbjct: 763 FRNL-VYPALSSDRQPKWIQISGVPFYDDNGNFAGYRGVGT 802



 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/151 (14%), Positives = 52/151 (34%), Gaps = 16/151 (10%)

Query: 442 INKRKMEIEVMQ--LCSILEATSDGIAIINREGIILSTNRAVSKLF---------GYPVE 490
           + ++ +E    Q  L   +++ SDG  +++ E  ++  N+    L          G   +
Sbjct: 272 LRQQNLERRRAQVQLKLAVDSLSDGFILLDEEYRMVLFNQPYLDLHDKIADAIKPGVYFK 331

Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
           DIL          +       +L E L        +          + + +    +K   
Sbjct: 332 DILALGIERGQFPDAVGREEEWLAEQLKPPGEDGNDFEVAF--SGGRWVRIY---EKGTP 386

Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKE 581
           +        DI+   + + +   A+++A+K 
Sbjct: 387 NGGLVGLRSDITRQVETRYRAEVAEQLAQKS 417


>gi|301100816|ref|XP_002899497.1| hybrid signal transduction histidine kinase, putative [Phytophthora
            infestans T30-4]
 gi|262103805|gb|EEY61857.1| hybrid signal transduction histidine kinase, putative [Phytophthora
            infestans T30-4]
          Length = 2036

 Score =  337 bits (865), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 130/742 (17%), Positives = 263/742 (35%), Gaps = 67/742 (9%)

Query: 86   TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCD-VSDILHIDPNNHI-GDLLKRQNTW 143
             + +D  G +   +++  + +     +++G  L +      + +    +    L    T 
Sbjct: 820  IFGVDKEGCVNIWNKKAAEIMQYSNDEVVGENLVEKFITEDYREAVGAVLSKALDGFETA 879

Query: 144  YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
              +  L    G    V I L A P ++ +    G  G G                RL +K
Sbjct: 880  NFEFPLVTKAGR--RVEILLNATPRFNEHGTVIGMVGIG--QDITDRIAQEQEYARLIEK 935

Query: 204  FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM--KNKVSSLTEYYAHKDDVLKTEKYPL 261
             +           V+ E              R   +  V      +A  +      +  L
Sbjct: 936  ANAPI------FGVDSEGKINIWNHKTAEMTRFSKEEAVGKDLMSWAIPEQYRDAVETIL 989

Query: 262  LTSEESSLPEQEDFHTINLNQYTK--KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
              + E       D         T   +       +   +    +      +     ++  
Sbjct: 990  WKALEGDETSNFDVELKKKTGRTVNIRMNATARFDQHGQIVGVVGIGQDITDRIVQEQE- 1048

Query: 320  NLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
                  +D    P F V ++  +   N     +TKY + + I     L     +P+    
Sbjct: 1049 --YTRLIDTANAPIFGVDANLCVNIWNKKAAQITKYSTAEVIGEN--LVETFISPEYRPA 1104

Query: 379  NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
             A    +  ++      A+     I         +      + +     +   GI  +  
Sbjct: 1105 VAD---VFSKALNGIQTANFEFPLITRPGTRIEIL-LNATPRNDMHGNIVGVVGIGQDIT 1160

Query: 439  DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
            D       +  E      +++  +  I  ++  G +   N+ + ++ GY    +L     
Sbjct: 1161 DR------IAQEHEYFR-LIDTANAPIFGVDTFGCVNEWNQKIEEITGYHKSTVLGLSLV 1213

Query: 499  V-FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SC 553
              F+     S +   L + L        E     +T   + L L +              
Sbjct: 1214 DAFINAENRSEVRKLLNQALIG--IDVGEMELPMTTAAGRSLLLLVNASSKKDMHGNIRG 1271

Query: 554  YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
                  D +  K  +              + K +FLA  SHE+RTPL  ++G  E++++Q
Sbjct: 1272 VIGVGQDYTAKKHME--------------AAKVNFLASFSHELRTPLNGVLGMLELLRDQ 1317

Query: 614  RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
            +           Y +    SG+L+L+++ND+LD+SKIE+G M +  +P  +++ +  ++ 
Sbjct: 1318 KLDKTPE----RYVHIAYISGSLLLNLINDILDLSKIEAGHMEISADPFQMEDLLEYSVE 1373

Query: 674  LVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
            + +  A EK I ++   +  +P R++ D+  ++Q+ LN+LSNAI FT  G  I +     
Sbjct: 1374 IFKFKAREKHIKLKLECSPKVPKRVIGDVSRLRQVLLNLLSNAIKFTNEGS-ITVRCNMV 1432

Query: 733  SNEEV-------ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
             + ++       + +V DTGVGM + E  +    F ++  +++    G+GLGL + K +V
Sbjct: 1433 PSPDLPKHCVKLLFQVIDTGVGMDDEEKSRLFSLFTKLERTRKNNPTGSGLGLAICKQLV 1492

Query: 786  DANMGKFYIFSTPAKGTLIEII 807
            +   G   + S   +G+     
Sbjct: 1493 ELMDGDIDVDSELGEGSEFFFT 1514



 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 61/503 (12%), Positives = 138/503 (27%), Gaps = 32/503 (6%)

Query: 86   TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCD--VSDILHIDPNNHIGDLLKRQNTW 143
             + ID  G +   + +          +  G RL +  +        ++ I   ++ + T 
Sbjct: 580  IFGIDMDGRVDIWNRKAVAITEYTVLEARGTRLVESFIPHDYRAGVSDVISKAMEGEGTA 639

Query: 144  YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
              +  L    G    V I L A P Y+++ E  G  G G                RL   
Sbjct: 640  NFEFPLITKTGR--RVDILLNATPRYNQHGEIVGVVGIG--QDITERIVQEQEYSRLIDT 695

Query: 204  FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
             +           V                  M   +        ++  V       L  
Sbjct: 696  ANAPIFGVDMAGLVNIWNDKSAEITQFTADEVMGKDLVQEFISEGYRSAVGLVLSQAL-- 753

Query: 264  SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
            +   +        T +  +           N   E    +S     +     ++      
Sbjct: 754  NGVQTANFNFPLITKSGRRVEILLNATPRYNELGEIVGVVSIGQDITERIAQEQE---YS 810

Query: 324  ETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
              +D    P F V   G +   N     + +Y + + +        L++     D     
Sbjct: 811  RLIDTANAPIFGVDKEGCVNIWNKKAAEIMQYSNDEVVGEN-----LVEKFITEDYREAV 865

Query: 383  PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
              +L ++      A+     +         +      + N+    +   GI  +  D   
Sbjct: 866  GAVLSKALDGFETANFEFPLVTKAGRRVEIL-LNATPRFNEHGTVIGMVGIGQDITDRI- 923

Query: 443  NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF-TVFL 501
                   +  +   ++E  +  I  ++ EG I   N   +++  +  E+ + K   +  +
Sbjct: 924  ------AQEQEYARLIEKANAPIFGVDSEGKINIWNHKTAEMTRFSKEEAVGKDLMSWAI 977

Query: 502  EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLT 557
             +     +   L + L  D     +       K  + +++R+                  
Sbjct: 978  PEQYRDAVETILWKALEGDETSNFDVEL--KKKTGRTVNIRMNATARFDQHGQIVGVVGI 1035

Query: 558  MHDISEWKQEKNKLSHAKKIAEK 580
              DI++   ++ + +     A  
Sbjct: 1036 GQDITDRIVQEQEYTRLIDTANA 1058



 Score =  133 bits (334), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 69/595 (11%), Positives = 169/595 (28%), Gaps = 56/595 (9%)

Query: 18  CKGNTQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTF--- 74
           C+ +++   K+K   G + + SK+ N  H+                  +   S +     
Sbjct: 8   CRAHSKPSQKQK--PGRKKKASKQSNNNHEKVTAPPSATAGTRRSRRDSNCSSGSGIDAD 65

Query: 75  -----------VFDPIPRTVRF---------TWNIDAHGYLKEISEELPKTIGNYAFKMI 114
                         P      F            +D  G +   + +L +  G  +  ++
Sbjct: 66  DRRPSIASATERISPGLHPRLFRILSEANAPALAMDMTGRVTFWNHKLAELCGLPSVDVV 125

Query: 115 GMRLCDV-SDILHIDPNNHIGDLLKRQN-TWYGKTTLW--PIEGTNLYVPIDLAALPIYS 170
           G  + ++ +     D    +       N T YG       P  G N+ + ++L       
Sbjct: 126 GRPITELVTAHTTADVMRGLEQARSDINATVYGVEIELNTPELGRNVKLLVNLTV----D 181

Query: 171 RNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP 230
            + +        I     V            +  + + E+ +                  
Sbjct: 182 VDDKNKASSVVAIGQDVTVWMQGSQYALVAQQANAPIVELDRDGRITLWNPK-----AEA 236

Query: 231 PPHLRMKNKVS-SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYF 289
                +   +   L +    +  VL  E    + S  +S+ E E           +  + 
Sbjct: 237 LTGYAIDQVIGTPLVDLVHDEFQVLVAELLARVASTNTSVSELELPLKTASGARVELLFS 296

Query: 290 GTLQNNSKESFEYLSHRNHPSLSAYFD-EGENLTPETVDKCPIPFF-VYSHGNLFYANPS 347
            T Q         ++               E    + VD    P F V + G +   N  
Sbjct: 297 LTPQATVDGVDTTVNRIVAIGQDVTARNASEMEHSKLVDSANAPIFGVDTEGCVVIFNKK 356

Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
              ++ Y   + + +   L + L      +  A    +  ++ R    A+     I  + 
Sbjct: 357 AAQISGYWPGEVMGVE--LVSFLIHEDYREKVA---AVFQKALRGIETANFEFPLITKDG 411

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
                +      + N     +   GI  +  +  + +++          +++  +  I  
Sbjct: 412 RRVEIL-LNATPRYNHAGAIVGVVGIGQDITERIVQEQE-------YNRLIDTANAPIVG 463

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
           ++++  +   N+  + L  Y     + K    F+ ++    +   L++ +        E 
Sbjct: 464 VDKKFRVTIWNKKAATLTDYSYTQAIGKDLLGFIAEHARDTVADVLSKAMGGVETPNFEF 523

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEK 580
             +  T  +  + L    +     +      T  D ++ + ++ +       A  
Sbjct: 524 PLVTKTGRQLDILLNATPRFDHSGAITGVVGTGQDFTDQRAQEEEYIRLIDTANA 578



 Score =  132 bits (332), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 53/505 (10%), Positives = 137/505 (27%), Gaps = 36/505 (7%)

Query: 86   TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCD--VSDILHIDPNNHIGDLLKRQNTW 143
             + +D  G +   +++  +     A +++G  L    +S+         +   L    T 
Sbjct: 700  IFGVDMAGLVNIWNDKSAEITQFTADEVMGKDLVQEFISEGYRSAVGLVLSQALNGVQTA 759

Query: 144  YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                 L    G    V I L A P Y+   E  G    G                RL   
Sbjct: 760  NFNFPLITKSGR--RVEILLNATPRYNELGEIVGVVSIG--QDITERIAQEQEYSRLIDT 815

Query: 204  FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK--NKVSSLTEYYAHKDDVLKTEKYPL 261
             +           V+KE       +     ++      V          +D  +     L
Sbjct: 816  ANAPI------FGVDKEGCVNIWNKKAAEIMQYSNDEVVGENLVEKFITEDYREAVGAVL 869

Query: 262  LTSEESSLPEQEDFHTINLNQYTKK--QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
              + +       +F  +       +         N        +      +     ++  
Sbjct: 870  SKALDGFETANFEFPLVTKAGRRVEILLNATPRFNEHGTVIGMVGIGQDITDRIAQEQE- 928

Query: 320  NLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
                  ++K   P F V S G +   N     +T++   + +        +   P+   +
Sbjct: 929  --YARLIEKANAPIFGVDSEGKINIWNHKTAEMTRFSKEEAVGKDLMSWAI---PEQYRD 983

Query: 379  NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
                 +               L         ++ +      + +Q  + +   GI  +  
Sbjct: 984  AVETILWKALEGDETSNFDVELKKKT---GRTVNIRMNATARFDQHGQIVGVVGIGQDIT 1040

Query: 439  DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF- 497
            D  + +++          +++  +  I  ++    +   N+  +++  Y   +++ +   
Sbjct: 1041 DRIVQEQE-------YTRLIDTANAPIFGVDANLCVNIWNKKAAQITKYSTAEVIGENLV 1093

Query: 498  TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYS 555
              F+       +    ++ L+       E   +        + L    +     +     
Sbjct: 1094 ETFISPEYRPAVADVFSKALNGIQTANFEFPLITRPGTRIEILLNATPRNDMHGNIVGVV 1153

Query: 556  LTMHDISEWKQEKNKLSHAKKIAEK 580
                DI++   ++++       A  
Sbjct: 1154 GIGQDITDRIAQEHEYFRLIDTANA 1178



 Score =  128 bits (322), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 48/498 (9%), Positives = 133/498 (26%), Gaps = 29/498 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147
           +D    +   +++          + IG  L         D   + +   +    T   + 
Sbjct: 464 VDKKFRVTIWNKKAATLTDYSYTQAIGKDLLGFIAEHARDTVADVLSKAMGGVETPNFEF 523

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
            L    G    + I L A P +  +   +G  G G                RL    +  
Sbjct: 524 PLVTKTGRQ--LDILLNATPRFDHSGAITGVVGTG--QDFTDQRAQEEEYIRL--IDTAN 577

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
             I         + ++  +       +        +  +  H      ++        E 
Sbjct: 578 APIFGIDMDGRVDIWNRKAVAITEYTVLEARGTRLVESFIPHDYRAGVSDVISKAMEGEG 637

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
           +   +    T    +           N   E    +      +     ++        +D
Sbjct: 638 TANFEFPLITKTGRRVDILLNATPRYNQHGEIVGVVGIGQDITERIVQEQE---YSRLID 694

Query: 328 KCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
               P F V   G +   N     +T++ + + +        L+         +   ++L
Sbjct: 695 TANAPIFGVDMAGLVNIWNDKSAEITQFTADEVMGK-----DLVQEFISEGYRSAVGLVL 749

Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
            ++      A+     I  +      +      + N+  E +    I  +  +       
Sbjct: 750 SQALNGVQTANFNFPLITKSGRRVEIL-LNATPRYNELGEIVGVVSIGQDITERI----- 803

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
              +  +   +++  +  I  +++EG +   N+  +++  Y  ++++ +           
Sbjct: 804 --AQEQEYSRLIDTANAPIFGVDKEGCVNIWNKKAAEIMQYSNDEVVGENLVEKFITEDY 861

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDIS 562
                 +         +T        TK  + + + +                    DI+
Sbjct: 862 REAVGAVLSKALDGF-ETANFEFPLVTKAGRRVEILLNATPRFNEHGTVIGMVGIGQDIT 920

Query: 563 EWKQEKNKLSHAKKIAEK 580
           +   ++ + +   + A  
Sbjct: 921 DRIAQEQEYARLIEKANA 938


>gi|257487363|ref|ZP_05641404.1| two-component sensor/regulator [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|330988052|gb|EGH86155.1| two-component sensor/regulator [Pseudomonas syringae pv. lachrymans
           str. M301315]
 gi|331009038|gb|EGH89094.1| two-component sensor/regulator [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 576

 Score =  337 bits (865), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 120/529 (22%), Positives = 211/529 (39%), Gaps = 50/529 (9%)

Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS-----TLLDAPKLSDNNAIKPVM-- 385
                HG +   N     +  Y S D ++            L+       +    P+   
Sbjct: 48  IATDEHGVIQIFNVGAERMLGYHSEDVVDKITPADISDPAELIIRAAALSHELNTPITPG 107

Query: 386 ---LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
              L       I     L  I+ +     AM        +     +    I  ++   + 
Sbjct: 108 FEALVFKASRGIEDIYELTYIRKDGSRLSAM-VSVTSLRDSAETIIGYLLIGTDNTARKQ 166

Query: 443 NK-------RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
            +       +++  +     S++E+  D + + + +GII   N+ +  L G   ++++  
Sbjct: 167 EEEAQALLDQRLRDQQFYTRSLIESNIDALMMTDPQGIISDVNKQMMALTGRTRDELIGA 226

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--C 553
           P   F     P+  +  +  +LS       E         E ++S               
Sbjct: 227 PCKNFF--TDPASADAAIKRVLSEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRKLKG 284

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
                 D++E K+ +  L       E  S  KS+FLA +SHE+RTPL A+IGFSE +K+ 
Sbjct: 285 VFAAARDVTERKRFERTLEEKNVELEHASHMKSEFLATMSHELRTPLNAVIGFSEALKDG 344

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
             G + +     Y   I  SG  +L ++ND+LD+SK+E+G M L  EPV L+E +S ++ 
Sbjct: 345 MVGDMTDA-QRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELEPVDLEELLSNSLL 403

Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-- 731
           +V+  A  +RI ++     +   +  D R  KQI  N+L+NA+ F+  GG + ++     
Sbjct: 404 IVREQAALQRIQLKLETEADFGLLELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRQVS 463

Query: 732 ---------------------TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
                                   + + L V DTG+G+   ++ K  K F QI +    +
Sbjct: 464 FAQAGVIEGDWPAHTFPLPSSEYEQFLELSVSDTGIGIAQSDMNKLFKAFSQIDSGLARK 523

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819
            EGTGLGL + K + + + G   + S    G    +  P+     P +C
Sbjct: 524 FEGTGLGLAMVKQLTELHGGCVAVASVKDLGARFVVWLPI----RPPEC 568



 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/238 (11%), Positives = 64/238 (26%), Gaps = 7/238 (2%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            D  G + ++++++    G    ++IG    +         +  I  +L        + T
Sbjct: 199 TDPQGIISDVNKQMMALTGRTRDELIGAPCKNFFTDP-ASADAAIKRVLSEHKVSDYELT 257

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           +   +GT     +   A   + R+R+  G   F                +  + +  H  
Sbjct: 258 VRAYDGTETV--VSYNAATFHDRDRKLKGV--FAAARDVTERKRFERTLEEKNVELEHAS 313

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK-VSSLTEYYAHKDDVLKTEKYPLLTSEES 267
            +K    +    +              +K+  V  +T+        +      LL+    
Sbjct: 314 HMKSEFLATMSHELRTPLNAVIGFSEALKDGMVGDMTDAQRRYIGDIFNSGQHLLSLIND 373

Query: 268 SLP-EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
            L   + +   + L             +      +    R    L    D G      
Sbjct: 374 ILDLSKVEAGMMTLELEPVDLEELLSNSLLIVREQAALQRIQLKLETEADFGLLELDR 431



 Score = 45.0 bits (105), Expect = 0.054,   Method: Composition-based stats.
 Identities = 27/270 (10%), Positives = 70/270 (25%), Gaps = 36/270 (13%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGM-RLCDVSDILHI------------DPNNHIGD 135
            D HG ++  +    + +G ++  ++      D+SD   +             P     +
Sbjct: 50  TDEHGVIQIFNVGAERMLGYHSEDVVDKITPADISDPAELIIRAAALSHELNTPITPGFE 109

Query: 136 LL----KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN 191
            L     R      + T    +G+   +   ++   +        G+   G    N    
Sbjct: 110 ALVFKASRGIEDIYELTYIRKDGS--RLSAMVSVTSLRDSAETIIGYLLIGT--DNTARK 165

Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL------------RMKNK 239
                   LD++   L + +    S+ +   D      P   +            R +++
Sbjct: 166 QEEEAQALLDQR---LRDQQFYTRSLIESNIDALMMTDPQGIISDVNKQMMALTGRTRDE 222

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
           +          D          + SE      +      +  +        T  +  ++ 
Sbjct: 223 LIGAPCKNFFTDPASADAAIKRVLSEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRKL 282

Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
               +     +    F+         ++  
Sbjct: 283 KGVFAAARDVTERKRFERTLEEKNVELEHA 312


>gi|288942569|ref|YP_003444809.1| multi-sensor signal transduction histidine kinase [Allochromatium
           vinosum DSM 180]
 gi|288897941|gb|ADC63777.1| multi-sensor signal transduction histidine kinase [Allochromatium
           vinosum DSM 180]
          Length = 706

 Score =  337 bits (865), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 103/576 (17%), Positives = 203/576 (35%), Gaps = 36/576 (6%)

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
                       +        N           +  S     +    +            
Sbjct: 130 ETTLGGAPPRIGRPWVGRDLANATPSTGQPPPPRAASLIPVMHRFELDDTPYWWLAALNP 189

Query: 320 NLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
           +       +          G +        LL    S DDI      S  + A       
Sbjct: 190 DDFIGHFSQL----LPIEEGRVQLL-RYDGLLLLSTSPDDIPGRPDQSGAVPARLERQEL 244

Query: 380 AIKPVMLYRSDRTCIAASARLH-----TIQWNRENSLAMTFIP------FEKANQFPENM 428
                 L        A  A         +  +R    A                    + 
Sbjct: 245 GELAQTLADGHHVLTAYRASSRYPAVIAVHLDRGYIQAQWLREAGRLSMIVVPILAALSA 304

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
               +          + ++E +     S+ EA+SD I +    G ILSTN A  ++ GY 
Sbjct: 305 AILLLWLRRRRLAQQRAELERQRRLTSSVFEASSDAIMLTTPSGEILSTNPAFERMTGYS 364

Query: 489 VEDILRKPFTVFLEQ-NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
             + L +         +  +        +++    +      +   ++ +L +  + I  
Sbjct: 365 GAEALGRNPRFLSSGLHDQTFYRDIWCAVITQGHWRG---EIVNRRRDGELYNALLTIDA 421

Query: 548 LPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
           +         Y     DI++ K+ + +L  AK+ AE  +  K+ FL+ +SHE+RTP+  I
Sbjct: 422 VHDEYGELQHYVGVTSDITDRKRHEAELLAAKERAESAARAKTTFLSTMSHELRTPMHGI 481

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +G ++++         N R     + + RS + +L I+ D+LD +++++ ++ L   P  
Sbjct: 482 LGMTQLLLESDL----NERQRRQLDTVKRSADTLLAILADILDYTRMDAEELQLQPGPCD 537

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSG 722
               + + +++    A +K +      +      ++ D R ++QI   + +NA+ FT  G
Sbjct: 538 PLRIIRDVMTVYAPQAEKKGLGFVLDSSRPAPGFVIVDARRLQQILDKLTANAVKFTHEG 597

Query: 723 GQIIISTTHTSN------EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
            +I ++T   +         + + V DTG+G+ +   E   +PF Q   S   R  GTGL
Sbjct: 598 -EIRLATWLDTETPAGGSGRLAICVTDTGIGIPDALHESIFEPFVQADGSHTRRYGGTGL 656

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
           GL +A+ + +A  G   + S P +G+   +  P+  
Sbjct: 657 GLAIARRLAEALGGTLSVESEPDQGSRFTLSIPVQP 692



 Score = 68.5 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 26/262 (9%), Positives = 58/262 (22%), Gaps = 11/262 (4%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTL 149
             G +   +    +  G    + +G     +S  LH       I   +  Q  W G+   
Sbjct: 346 PSGEILSTNPAFERMTGYSGAEALGRNPRFLSSGLHDQTFYRDIWCAVITQGHWRGEIVN 405

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
              +G      + + A  ++    E   +   G+           A      ++      
Sbjct: 406 RRRDGELYNALLTIDA--VHDEYGELQHY--VGVTSDITDRKRHEAELLAAKERAESAAR 461

Query: 210 IKKGHSSVEKEKYD-----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
            K    S    +       I           +  +     +      D L      +L  
Sbjct: 462 AKTTFLSTMSHELRTPMHGILGMTQLLLESDLNERQRRQLDTVKRSADTLLAILADILDY 521

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
                 E +            +         +++        +      +         +
Sbjct: 522 TRMDAEELQLQPGPCDPLRIIRDVMTVYAPQAEKKGLGFVLDSSRPAPGFVIVDARRLQQ 581

Query: 325 TVDKCPI-PFFVYSHGNLFYAN 345
            +DK           G +  A 
Sbjct: 582 ILDKLTANAVKFTHEGEIRLAT 603


>gi|21233072|ref|NP_638989.1| sensor histidine kinase [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66770012|ref|YP_244774.1| sensor histidine kinase [Xanthomonas campestris pv. campestris str.
           8004]
 gi|21114924|gb|AAM42913.1| sensor histidine kinase [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66575344|gb|AAY50754.1| sensor histidine kinase [Xanthomonas campestris pv. campestris str.
           8004]
          Length = 630

 Score =  337 bits (865), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 96/499 (19%), Positives = 191/499 (38%), Gaps = 38/499 (7%)

Query: 334 FVYSHGN-----LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388
            V+             N +F   T    V ++       ++       +           
Sbjct: 1   MVFEGDRPTDYIFRVTNEAFQRYTGLSEVANV-------SMRSLRADHEQEWFDRYGHVA 53

Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
                I    +   +           +         PE      +  +  + +  +R++ 
Sbjct: 54  LTGNRIHFEMQAKALNR--------WYSVDAFRVGPPELKRVAVLFMDITERKRVERELA 105

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
               +  ++ +     + +++ +G++   N A  + FG  +       ++  L      V
Sbjct: 106 ESEARFSALADGLPMPVWVLDAQGVVRFVNSAYGEFFGVDISSGTVSAWSELLHPEDVPV 165

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH----DISEW 564
                    SL+ ++ L  +      + +   + +       +    + +     D++E 
Sbjct: 166 FQ--FELAASLEEQRGLHALVRARRHDGQWRWIEMTATPRYSADGRFIGLAGSSPDVTEQ 223

Query: 565 K-------QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
           +       Q       A+  AE  +  K +FLA +SHE+RTPLT I+G+SE++  +    
Sbjct: 224 REIALAREQLLESERSARNEAESMARLKDEFLATLSHELRTPLTTILGWSELLLQRV--E 281

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
            G+P Y    + I  S      +++D+LD+S +  GK+ L  E + L E V EA+   + 
Sbjct: 282 EGHPNYKG-LSVIASSARAQKRLISDMLDLSSMLLGKVQLEVESLDLAEQVREALGAQEP 340

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737
            A  K  +++         +L D   ++Q+  N+LSNAI FTP+ G+I ++  H  +   
Sbjct: 341 VAEGKDQVLQLHVPPTPCLVLGDATRLQQVFWNLLSNAIKFTPAHGRIDVTVEH-DDGHF 399

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS- 796
           I+ VRD+G G+ +  L      F Q   +   +  G GLGL + + +V+ + G+    S 
Sbjct: 400 IVSVRDSGDGIASEFLPHLFGRFRQADATTTRQHGGLGLGLAIVQQLVEMHGGQVGATSG 459

Query: 797 TPAKGTLIEIIFPLYDTSH 815
              KG    +  P +    
Sbjct: 460 GRGKGATFTVRLPEHQPDQ 478



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 48/462 (10%), Positives = 122/462 (26%), Gaps = 48/462 (10%)

Query: 54  FTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM 113
           F D  +         +SE  F        +   W +DA G ++ ++    +  G      
Sbjct: 91  FMDITERKRVERELAESEARFSALADGLPMP-VWVLDAQGVVRFVNSAYGEFFGVDISSG 149

Query: 114 IGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172
                 ++     +      +   L+ Q   +        +G   +  I++ A P YS +
Sbjct: 150 TVSAWSELLHPEDVPVFQFELAASLEEQRGLHALVRARRHDG--QWRWIEMTATPRYSAD 207

Query: 173 REFSGFRGFG-IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231
             F G  G    V   R     R      ++   +  E        E         ++P 
Sbjct: 208 GRFIGLAGSSPDVTEQREIALAREQLLESERSARNEAESMARLKD-EFLATLSHELRTPL 266

Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLN---QYTKKQY 288
             +   +++        H +    +       +++  + +  D  ++ L       +   
Sbjct: 267 TTILGWSELLLQRVEEGHPNYKGLSVIASSARAQKRLISDMLDLSSMLLGKVQLEVESLD 326

Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSF 348
                  +  + E ++      L  +      L      +    F+      + +  P+ 
Sbjct: 327 LAEQVREALGAQEPVAEGKDQVLQLHVPPTPCLVLGDATRLQQVFWNLLSNAIKF-TPAH 385

Query: 349 LLLTKYKSVDDI-------EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401
             +      DD        +   G+++                   +     +  +    
Sbjct: 386 GRIDVTVEHDDGHFIVSVRDSGDGIASEFLPHLFGRFRQADATTTRQHGGLGLGLAIVQQ 445

Query: 402 TIQWNREN-----------SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR----K 446
            ++ +              +     +P  + +Q      +             +     +
Sbjct: 446 LVEMHGGQVGATSGGRGKGATFTVRLPEHQPDQAKRPRLELRRRLMSEQIVEARALNGLR 505

Query: 447 MEIEVMQ------LCSILE----------ATSDGIAIINREG 472
           +     Q      L  +LE          + +D +A+I+  G
Sbjct: 506 LLAVEDQPDMLDYLRRLLEEQGAEVVTAGSATDALALIDHRG 547



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/239 (8%), Positives = 58/239 (24%), Gaps = 11/239 (4%)

Query: 228 QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287
                     ++V++++      D   +        +   +    E         Y+   
Sbjct: 17  NEAFQRYTGLSEVANVSMRSLRADHEQEWFDRYGHVALTGNRIHFEMQAKALNRWYSVDA 76

Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANP 346
           +        + +  ++       +     E E       D  P+P +V    G + + N 
Sbjct: 77  FRVGPPELKRVAVLFMDITERKRVERELAESEARFSALADGLPMPVWVLDAQGVVRFVNS 136

Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
           ++                  S LL    +          L           A     + +
Sbjct: 137 AYGEFFGVDISS--GTVSAWSELLHPEDVPVFQFELAASLEEQRGLHALVRA-----RRH 189

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI---NKRKMEIEVMQLCSILEATS 462
                 +      + +     +   G  P+  + R     + ++        +  E+ +
Sbjct: 190 DGQWRWIEMTATPRYSADGRFIGLAGSSPDVTEQREIALAREQLLESERSARNEAESMA 248


>gi|298244389|ref|ZP_06968195.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297551870|gb|EFH85735.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 745

 Score =  337 bits (865), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 131/736 (17%), Positives = 259/736 (35%), Gaps = 51/736 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147
           +D    +   S      +G    K+ G  L   +  L        +   +  Q +    T
Sbjct: 50  LDPSATIYYASTRAAAMLGTSKQKLQGGTLWQGAPHLVGTALYQAVTTAIHTQESLA-IT 108

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFR-GFGIVHVNRVDNDPRALGKRLDKKFSH 206
              PI  T  ++ + L  LP +        F+ G   V ++          + L + F+ 
Sbjct: 109 YRCPI--TQNWLRVRL--LPTHG--GVLLFFQKGKEPVRLSDALPQSEQRYRSLLESFT- 161

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
                 G   +  E   I   Q P    ++  +                      L +  
Sbjct: 162 -----DGIVILTPEGLIIDINQHPLVVAQVSREEVIGRPMVDFPTWKSAPVAQKQLRAAI 216

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQ------NNSKESFEYLSHRNHPSLSAYFDEGEN 320
           +     E  H   +  Y + +++  L       +   +  EYL+            E E 
Sbjct: 217 ARASGGETVH-FEVRLYPQAEHYRDLALVIIPHHADNQRIEYLTCVGLEVTERKQAEEEW 275

Query: 321 LTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
                +D  P   +V    G+  Y N  +   T     DD  I G    +    +     
Sbjct: 276 RV--LLDVLPHFVWVMRPDGSPSYQNRRWRDYTTVAVEDDQGIDGWSHWIHPDDRQRVLE 333

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
             +  +     ++      +   ++               + +Q               +
Sbjct: 334 TWQAAV-----QSGNPYEVQHRLLEGETGTYRWYLTRGVPRKDQQGVIWQWVRTCTNVDE 388

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
            +  +  +     ++ +++++   GI  I+R+  I+  N    ++ GY  ED+ +     
Sbjct: 389 LKEVETALYQSRERMRTLMDSNIIGIF-ISRDDEIIEANNTFLRMTGYSQEDLRQGNMDW 447

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY-SLTM 558
           F   +  S       +      +  L        K+   L + +     PF        +
Sbjct: 448 FRMTHPDSFTRTQQAQQELTQHQTLLPYEKEYVCKDGSRLPVLVCAVAFPFDPSQNICFV 507

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            D S  K+ + +              K +FL+  SHE++TPLTAI    + +   R    
Sbjct: 508 LDNSARKELELR--------------KENFLSMASHELKTPLTAIKMRLQ-LARVRLLKQ 552

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
           G        +  +   +L+  ++ +LLD+SK+++GK++  +EPV ++  V E     QL 
Sbjct: 553 GLGEAATMLSRAEEPVHLLDRLIGELLDVSKLQAGKLDYLYEPVDMEALVYEIAETTQLM 612

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738
           +    I++  S       ++ D   ++Q+ +N++SNAI ++P    + I    TS   V 
Sbjct: 613 STTHTIVVHGSAPG---TVIGDKGRLEQVFINLISNAIAYSPDANTVDIDLHATSEA-VT 668

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           + VRD G+G+   + EK  + F +  +  Q    G G+GL +A+ +V  + G   + S  
Sbjct: 669 VSVRDYGIGIPQGQREKIFERFYRAFDLSQRAVPGLGMGLTIAQEIVTQHGGTITVQSEE 728

Query: 799 AKGTLIEIIFPLYDTS 814
            KG+  ++  PL   +
Sbjct: 729 GKGSTFQVTLPLERPT 744



 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/316 (8%), Positives = 70/316 (22%), Gaps = 16/316 (5%)

Query: 65  TNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIG-MRLCDVSD 123
           T    +E  +          F W +   G     +               G         
Sbjct: 266 TERKQAEEEWRVLLDVLP-HFVWVMRPDGSPSYQNRRWRDYTTVAVEDDQGIDGWSHWIH 324

Query: 124 ILHIDPNNHIGD-LLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFG 182
                         ++  N +  +  L     T  Y       +P   +      ++   
Sbjct: 325 PDDRQRVLETWQAAVQSGNPYEVQHRLLE-GETGTYRWYLTRGVPRKDQQGVI--WQWVR 381

Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS 242
                    +      +  ++   L +       + ++   I +  +         +   
Sbjct: 382 TCTNVDELKEVETALYQSRERMRTLMDSNIIGIFISRDDEIIEANNTFLRMTGYSQEDLR 441

Query: 243 LTEYYA-----HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTK-KQYFGTLQNNS 296
                              +    LT  ++ LP ++++   + ++            + S
Sbjct: 442 QGNMDWFRMTHPDSFTRTQQAQQELTQHQTLLPYEKEYVCKDGSRLPVLVCAVAFPFDPS 501

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKS 356
           +     L +     L    +   ++    +              L  A    L     ++
Sbjct: 502 QNICFVLDNSARKELELRKENFLSMASHELKTPLTAI----KMRLQLARVRLLKQGLGEA 557

Query: 357 VDDIEIAGGLSTLLDA 372
              +  A     LLD 
Sbjct: 558 ATMLSRAEEPVHLLDR 573



 Score = 41.2 bits (95), Expect = 0.81,   Method: Composition-based stats.
 Identities = 16/135 (11%), Positives = 39/135 (28%), Gaps = 7/135 (5%)

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
           QL S+LE  SD +  ++    I   +   + + G   + +              + +   
Sbjct: 35  QLTSLLETLSDTLIFLDPSATIYYASTRAAAMLGTSKQKLQGGTLWQGAPHLVGTALYQA 94

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572
           +T  +       +      +        LR+ +          L      E  +  + L 
Sbjct: 95  VTTAIHTQESLAITYRCPITQN-----WLRVRLLPTH--GGVLLFFQKGKEPVRLSDALP 147

Query: 573 HAKKIAEKESSHKSD 587
            +++         +D
Sbjct: 148 QSEQRYRSLLESFTD 162


>gi|32475597|ref|NP_868591.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
 gi|32446139|emb|CAD75968.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
          Length = 801

 Score =  337 bits (865), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 107/623 (17%), Positives = 238/623 (38%), Gaps = 34/623 (5%)

Query: 214 HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE 273
                + +  + S  +      +   + +          ++ +         E      +
Sbjct: 12  ALFHARMEARVNSTATTENQRSLTRSLVNPLAVAVVMIVLIISGVIAFHNIRELQETRLK 71

Query: 274 DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK----- 328
              T+ +     +     +     +        +       F E    T E++D+     
Sbjct: 72  VGLTLKVLASLAEIEGAVMDAERGQRD--YLITDDQRHLEPFKEAVKRTRESLDQFEKLT 129

Query: 329 ----CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
                    F Y   N+         +   ++ +  E A           L        +
Sbjct: 130 QDHAVQRAKFNYLRENVEERIKHLNAVLDIRAEEGPEAARAAVIQNLDQNLMGKIDDLAI 189

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
            + + +   +     + T  +      +++             +       E    +  +
Sbjct: 190 SMRKIEEDLLVVREAMATRAYRSGIVTSVSSTLIGLI-----LVGSVLYLLERNRRKAER 244

Query: 445 RKM--EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
             +       ++   L+A   G   I+ E   L T+    ++ G   E++  +     + 
Sbjct: 245 DALMLNATRERVQLALDAAEMGAWNIDPETNTLQTDERYRRIHGVEQEEMTFEDSLKRIH 304

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII-IKKLPFSSC------YS 555
            +  + +   +   +S               ++  +  +    I +            + 
Sbjct: 305 PDDRARVRQAVRASMSPLDPSPYSVEYRVVHRDGSIRWVSSKGIARASRRRGKAVLTSFD 364

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
            T+ D++E K+++ +L  +++IA   +  KS+FLA +SHEIRTP+ AI+G+++V+     
Sbjct: 365 GTVADVTERKRQEERLQRSEQIALAANQSKSEFLANMSHEIRTPMAAILGYADVLL---- 420

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
           G L +P        I R+G  +L ++ND+LD+S+IE+GK+++  E V L   V +  SL+
Sbjct: 421 GHLEDPDNRNCVMIIKRNGEHLLSLINDILDLSRIEAGKLSVDAESVPLPRLVGDIQSLM 480

Query: 676 QLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
           Q+ A+EK +  +  F   +P+ I  D   ++Q+ +N++ NAI FT  G  + +       
Sbjct: 481 QVRADEKNVDFQVEFEGRVPQSIETDPTRLRQVLINLIGNAIKFTDEGS-VRLKVRFMKG 539

Query: 735 EE---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
            +   V   + DTG+G++  + ++  KPF Q   S   +  G+GLGL +++ +++   G+
Sbjct: 540 ADPPVVEFSIVDTGIGISKEQQDRLFKPFSQGDASVTRKYGGSGLGLAISQRLIEMMDGE 599

Query: 792 FYIFSTPAKGTLIEIIFPLYDTS 814
             + S   +G+   +  P++   
Sbjct: 600 MSLESELGEGSTFFVRLPVHSVE 622



 Score = 41.6 bits (96), Expect = 0.53,   Method: Composition-based stats.
 Identities = 31/252 (12%), Positives = 66/252 (26%), Gaps = 18/252 (7%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR------Q 140
           WNID      +  E   +  G    +   M   D    +H D    +   ++        
Sbjct: 268 WNIDPETNTLQTDERYRRIHGVEQEE---MTFEDSLKRIHPDDRARVRQAVRASMSPLDP 324

Query: 141 NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
           + +  +  +   +G+  +V     A     R  +       G V             +R 
Sbjct: 325 SPYSVEYRVVHRDGSIRWVSSKGIARASRRR-GKAVLTSFDGTVADVTERKRQEERLQRS 383

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
           ++     ++ K    +    +          P   +      L  +    D+        
Sbjct: 384 EQIALAANQSKSEFLANMSHEIR-------TPMAAILGYADVLLGHLEDPDNRNCVMIIK 436

Query: 261 LLTSEESSL-PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
                  SL  +  D   I   + +       L     +    +  R       +  E E
Sbjct: 437 RNGEHLLSLINDILDLSRIEAGKLSVDAESVPLPRLVGDIQSLMQVRADEKNVDFQVEFE 496

Query: 320 NLTPETVDKCPI 331
              P++++  P 
Sbjct: 497 GRVPQSIETDPT 508


>gi|114766988|ref|ZP_01445907.1| cytoplasmic sensor hybrid histidine kinase [Pelagibaca bermudensis
           HTCC2601]
 gi|114540834|gb|EAU43897.1| cytoplasmic sensor hybrid histidine kinase [Roseovarius sp.
           HTCC2601]
          Length = 855

 Score =  337 bits (864), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 128/586 (21%), Positives = 234/586 (39%), Gaps = 41/586 (6%)

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
               ++   +     LL  +++ L         +    + + +    +     S   L  
Sbjct: 5   ARLAEERRARLAAERLLELKQAELFAANRKLGKHARALSDEIHETRAEITEVRSENRLVK 64

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSVDDIEIAG 364
                     +  E    + +      F +Y+   L   ANP+FL    ++ +D +    
Sbjct: 65  SQLGLAHEKIELVEGQLWKALQTMRDGFAMYNSDALLELANPAFLA--PFEDIDSVGPGA 122

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
               +L    + +          R   + +     +  I    E     T    +  ++ 
Sbjct: 123 SYRHVL-EMLVEEGIVDLQGERRRHWLSRMQERWEMSPIPP--ETIRLWTGQFIKIQDRR 179

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
             +     +  +             E+M++ S +E   DG  I + E  +L  N     L
Sbjct: 180 MPDGGVVSLCVDIT-----------ELMRMWSAIEELPDGFVIYDAEDRLLMCNAPYRNL 228

Query: 485 F---------GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
           +         G   EDILR   +             +L E LS   R   E+      ++
Sbjct: 229 YSDSAPAIIPGASFEDILRYGLSQGQYAEALGREEDWLEERLSAHRRA--EQEMEQQLRD 286

Query: 536 EKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
            + L +    ++            DI+E K+ + +L  AK+ AE+ S  KS FLA +SHE
Sbjct: 287 GRWLRIY---ERALSDGGRVGLRIDITEAKRIQQELVEAKRRAEEASHAKSAFLANMSHE 343

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           IRTP+  ++G +E+++        +     Y + I  SG  +L I+ND+LD SKIE+ ++
Sbjct: 344 IRTPMNGVVGMAELLRESAL----SDEQALYVDTIRNSGEALLVIINDILDYSKIEAERL 399

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSN 714
            L  EP  L+  V E + ++Q  A EK + +   +   +P R + D   V+QI  N++ N
Sbjct: 400 QLKPEPFDLERTVHEVLLMLQPTAREKGLELLVDYDMFLPTRFVGDPGRVRQIFTNLVGN 459

Query: 715 AIHFTPSGGQ-IIISTTHTSNEEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           A+ FT  G   I I+       E  +   V DTG+G+   ++E     F Q+ + +  + 
Sbjct: 460 AVKFTNEGHVLIRITGRCVEEGEAAVHATVEDTGIGIPPDKIEHIFGEFNQVEDDRNRQF 519

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI--EIIFPLYDTSH 815
           EGTGLGL + K + D   G+ ++ S   +G+     ++ P+ + + 
Sbjct: 520 EGTGLGLAITKRLTDLMGGEIWVESEAGRGSCFGLRMVLPVDEPAQ 565


>gi|329576539|gb|EGG58046.1| sensor protein kinase WalK [Enterococcus faecalis TX1467]
          Length = 609

 Score =  337 bits (864), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 83/418 (19%), Positives = 180/418 (43%), Gaps = 29/418 (6%)

Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
                  I+  R +      +     ++  +         E ++    +  ME E  +L 
Sbjct: 207 GEMHEQAIRIARGDYAG--KVEVHGKDELGQLAETFNQLSERIEE--AQETMEAERNRLD 262

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           S+L   +DG+   +R G +++ N     L     E+++       L+          L +
Sbjct: 263 SVLTHMTDGVIATDRRGKVITINEMALSLLNVKNENVIGTSLLELLDIEEDYT----LRK 318

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSH 573
           +L       +++ T    +++ ++ +   + +      +     +HD++E ++ + +   
Sbjct: 319 LLEEPDELLIDRSTSDREEDQMIIRVDFTMIRRESGFITGLVCVLHDVTEQEKNERE--- 375

Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
                      + +F++ VSHE+RTPLT++  + E +    +          +       
Sbjct: 376 -----------RREFVSNVSHELRTPLTSMRSYIEALSEGAW--ENPEIAPNFLKVTLEE 422

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN--EKRILIRTSFA 691
            + ++ ++NDLL++S+++SG  +L  E V+ +E ++  +    +     +K   IR  F 
Sbjct: 423 TDRMIRMINDLLNLSRMDSGNTHLQLEYVNFNELINFVLDRFDMMIENEQKNYKIRREFT 482

Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751
                +  D   V Q+  NIL+NAI ++P GG I       ++  V+  + D G+G+   
Sbjct: 483 KREFWVELDTDKVIQVLDNILNNAIKYSPDGGVITCRL-VETHNNVVFSISDQGLGIPKK 541

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +L K  + F ++  ++     GTGLGL ++K ++ A+ G  ++ ST  +G+   I  P
Sbjct: 542 DLGKVFERFYRVDKARARAQGGTGLGLAISKEVIRAHNGSIWVESTEGEGSTFYISLP 599



 Score = 38.1 bits (87), Expect = 7.2,   Method: Composition-based stats.
 Identities = 20/143 (13%), Positives = 43/143 (30%), Gaps = 7/143 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            D  G +  I+E     +      +IG  L ++   L I+ +  +  LL+  +      +
Sbjct: 275 TDRRGKVITINEMALSLLNVKNENVIGTSLLEL---LDIEEDYTLRKLLEEPDELLIDRS 331

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               E   + + +D     I   +   +G     ++H            +      SH  
Sbjct: 332 TSDREEDQMIIRVDFTM--IRRESGFITGL--VCVLHDVTEQEKNERERREFVSNVSHEL 387

Query: 209 EIKKGHSSVEKEKYDIFSQQSPP 231
                      E     + ++P 
Sbjct: 388 RTPLTSMRSYIEALSEGAWENPE 410


>gi|298529160|ref|ZP_07016563.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298510596|gb|EFI34499.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 1154

 Score =  337 bits (864), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 93/418 (22%), Positives = 172/418 (41%), Gaps = 53/418 (12%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILRKPFTV 499
           R +  ++     +  ++   +   I I + + G IL  N+A   L  Y   + L+     
Sbjct: 259 RRSGAELLRSETRFKTMFHDSPVAIYINDAQSGTILDANQAACNLCEYASLEELQTGNIW 318

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH 559
              Q + +    ++ + +     Q  E      +     + + +   ++  + C   T  
Sbjct: 319 LDPQYSFAEAQEWIRKAVEQG-PQVFEWHMRSRSGRSFWVQIHLRCIEVNAAPCVLATAI 377

Query: 560 DISEWKQEKNKLSHAKKIAEK--------------ESSHKSDFLARVSHEIRTPLTAIIG 605
           DI+E +Q + KL    +  E+               S  KS+FLA +SHEIRTP+  +IG
Sbjct: 378 DITERRQAEEKLHETARQMERKTVELDAALTRADAASKAKSEFLANMSHEIRTPMNGVIG 437

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
            + ++         N     YA  +  SG  +L ++ND+LD SKIESGK+ L      L 
Sbjct: 438 MTGLLLETDL----NETQRRYAETVRSSGQALLALLNDILDFSKIESGKLELEALNFDLR 493

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ 724
           + +    S++   A EK +    S   ++P  ++ D   ++QI  N++ NA+ FT  G +
Sbjct: 494 DTLDNFASMMAFKAEEKGLEFICSADPDVPDNLIGDPGRIRQILTNLVGNAVKFTERG-E 552

Query: 725 IIISTTHTSNE-------------------------------EVILRVRDTGVGMTNYEL 753
           +++  +   +                                 +   VRDTG+G+   ++
Sbjct: 553 VVVRVSIQESGVRRQETGDKSQETGDKSQETGDKSQESEEFCMLRFSVRDTGIGIPEDKI 612

Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
               + F Q+  S   +  GTGLGL +++ + +   G+  + S   +GT      PL 
Sbjct: 613 GLLFQSFSQVDASVTRKFGGTGLGLAISRQLAELMGGEVGVESIEGQGTTFWFTVPLS 670



 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/405 (9%), Positives = 88/405 (21%), Gaps = 42/405 (10%)

Query: 75  VFDPIPRTVRFTWN-IDAHGYLKEISEE--LPKTIGNYAF---KMIGMRLCDVSDI---- 124
            F+P     R       A+G    +         +G       + +G+ L D+++     
Sbjct: 11  AFEPGSSPARPLSRGPRANGRFVTLILAVVWLLVLGGSLAWNWRHVGVSLTDLAETEAHS 70

Query: 125 -LHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYS----RNREFSGFR 179
               D    +   +             P        P  L+ LP         RE +   
Sbjct: 71  AFMKDVTYRLWASMHGG-------VYVPPTEATPPNP-YLSHLPHRDVVTADGRELTLVN 122

Query: 180 GFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK 239
              +                       L           +              +   + 
Sbjct: 123 PAYMTRQVHELGRQEYGLVGHITSLQPLRPANAADPWETEALQTFLDGADRAVTVEQMDG 182

Query: 240 VSSLTEYYA--HKDDVLKTEKYPLLTSEESSLP-----EQEDFHTINLNQYTKKQYFGTL 292
                           L           +             +      Q         L
Sbjct: 183 QPVFRLMRPLVALPSCLTCHSEQGYQEGDPMGGISVSVPLRPYLDAAGQQRLFLLVAHGL 242

Query: 293 QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH--GNLFYANPSFLL 350
                 S    + R+     A     E          P+  ++     G +  AN +   
Sbjct: 243 IGGLGLSGLVWAGRSLRRSGAELLRSETRFKTMFHDSPVAIYINDAQSGTILDANQAACN 302

Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
           L +Y S+++++       +   P+ S   A + +         +     +     +  + 
Sbjct: 303 LCEYASLEELQ----TGNIWLDPQYSFAEAQEWIRKAVEQGPQV-FEWHMR--SRSGRSF 355

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
                +   + N  P          +  + R  + K+     Q+ 
Sbjct: 356 WVQIHLRCIEVNAAPC---VLATAIDITERRQAEEKLHETARQME 397


>gi|6687470|emb|CAB64973.1| VicK protein [Enterococcus faecalis]
          Length = 611

 Score =  337 bits (864), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 83/418 (19%), Positives = 180/418 (43%), Gaps = 29/418 (6%)

Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
              R   I+  R +      +     ++  +         E ++    +  ME E  +L 
Sbjct: 209 GEMREQAIRIARGDYAG--KVEVHGKDELGQLAETFNQLSERIEE--AQETMEAERNRLD 264

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           S+L   +DG+   +R G +++ N     L     E+++       L+          L +
Sbjct: 265 SVLTHMTDGVIATDRRGKVITINEMALSLLNVKNENVIGTSLLELLDIEEDYT----LRK 320

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSH 573
           +L       +++ T    +++ ++ +   + +      +     +HD++E ++ + +   
Sbjct: 321 LLEEPDELLIDRSTSDREEDQMIIRVDFTMIRRESGFITGLVCVLHDVTEQEKNERE--- 377

Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
                      + +F++ VSHE+RTPLT++  + E +    +          +       
Sbjct: 378 -----------RREFVSNVSHELRTPLTSMRSYIEALSEGAW--ENPEIAPNFLKVTLEE 424

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN--EKRILIRTSFA 691
            + ++ ++NDLL++S+++SG  +L  E V+ +E ++  +    +     +K   I   F 
Sbjct: 425 TDRMIRMINDLLNLSRMDSGNTHLQLEYVNFNELINFVLDRFDMMIENEQKNYKICREFT 484

Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751
                +  D   V Q+  NIL+NAI ++P GG I       ++  V+  + D G+G+   
Sbjct: 485 KRDLWVELDTDKVIQVLDNILNNAIKYSPDGGVITCRL-VETHNNVVFSISDQGLGIPKK 543

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +L K  + F ++  ++     GTGLGL ++K ++ A+ G  ++ ST  +G+   I  P
Sbjct: 544 DLGKVFERFYRVDKARARAQGGTGLGLAISKEVIRAHNGSIWVESTEGEGSTFYISLP 601



 Score = 38.1 bits (87), Expect = 6.8,   Method: Composition-based stats.
 Identities = 20/143 (13%), Positives = 43/143 (30%), Gaps = 7/143 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            D  G +  I+E     +      +IG  L ++   L I+ +  +  LL+  +      +
Sbjct: 277 TDRRGKVITINEMALSLLNVKNENVIGTSLLEL---LDIEEDYTLRKLLEEPDELLIDRS 333

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               E   + + +D     I   +   +G     ++H            +      SH  
Sbjct: 334 TSDREEDQMIIRVDFTM--IRRESGFITGL--VCVLHDVTEQEKNERERREFVSNVSHEL 389

Query: 209 EIKKGHSSVEKEKYDIFSQQSPP 231
                      E     + ++P 
Sbjct: 390 RTPLTSMRSYIEALSEGAWENPE 412


>gi|302923768|ref|XP_003053746.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256734687|gb|EEU48033.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 1371

 Score =  337 bits (864), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 104/562 (18%), Positives = 194/562 (34%), Gaps = 48/562 (8%)

Query: 295  NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTK 353
             +              ++   +  E       D  P   +   S G + + N  F   + 
Sbjct: 484  LAGVVTGRDVTVMTEEITQIKERDEERFKLICDTMPQLVWTATSDGLVDFWNTRFYNYSG 543

Query: 354  YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
                + +  +             D+          S  T             +      +
Sbjct: 544  LTPENSLGKS------WVNAFHPDDLVEAQRRWKHSLNTGDPYMTEYRCQSRDGHWRWFL 597

Query: 414  TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
                 ++  +  +     G   +  ++   K   +    QL S++  +   I  ++ +  
Sbjct: 598  GRALPQRNKETGKVERWFGTCTDVHESIQTKMNAKRTRQQLLSVIAHSHVTIFTVDPKRR 657

Query: 474  ILS------TNRAVSKLFGYPVEDI------LRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
            +         N    +        +      +    T  L           +  IL   +
Sbjct: 658  VTMLEGALIWNNTHEENHDGTRWFVGENMYKVFNRLTAQLADGERPEFLEPIELILDGRV 717

Query: 522  RQTL-EKITLGSTKEEKLLSLRIIIKKLPFS------SCYSLTMHDISEWKQEKNKLSHA 574
             + + E          + L +     +   +            + D++E K  +  L   
Sbjct: 718  AEDVKEHGIDDRWYRTRFLPMFGKKTQESGAKNDTYIEGVIGVIMDVTELKSREQALEKQ 777

Query: 575  KKI----------AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
             K           A++ +  KS FLA +SHEIRTP+T ++G +E++         +    
Sbjct: 778  SKEKRKAIANEAAAKEANRLKSQFLANMSHEIRTPITGVLGMAELLAGMHL----DEEQQ 833

Query: 625  EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
            EY   I  S   +L ++ND+LD SK+ESG++++     SL   V E   ++Q     K +
Sbjct: 834  EYVENIQSSATSLLTVINDILDFSKVESGRLDIEEVQFSLSHIVKEVGRMLQFAVERKNL 893

Query: 685  LIRTSFANNIPR---ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EV 737
              ++   ++I     ++ D   V+QI  N+L+N+I FT  G  +  S           EV
Sbjct: 894  DFQSEIGDSIENDLVVIGDPGRVRQILTNLLTNSIKFTNQG-YVRFSVVAEKETAESIEV 952

Query: 738  ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
               V D+G+G+ +   +K  +PF Q   S   R  GTGLGL + K ++D   G+  + S 
Sbjct: 953  RFTVEDSGIGIQDEVRKKLFQPFSQGDASTARRFGGTGLGLTICKNLLDLMHGRISLESN 1012

Query: 798  PAKGTLIEIIFPLYDTSHPHDC 819
               GT      P    S P + 
Sbjct: 1013 VGVGTRATFWIPFNKPSGPAEA 1034



 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/172 (9%), Positives = 39/172 (22%), Gaps = 7/172 (4%)

Query: 70  SENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI-D 128
            E  F         +  W   + G +   +       G      +G    +      + +
Sbjct: 507 DEERFKLICDTMP-QLVWTATSDGLVDFWNTRFYNYSGLTPENSLGKSWVNAFHPDDLVE 565

Query: 129 PNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYS-RNREFSGFRGFGIVHVN 187
                   L   + +  +      +G   +      ALP  +    +    R FG     
Sbjct: 566 AQRRWKHSLNTGDPYMTEYRCQSRDGH--WRWFLGRALPQRNKETGKVE--RWFGTCTDV 621

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK 239
                 +   KR  ++   +             K  +   +          +
Sbjct: 622 HESIQTKMNAKRTRQQLLSVIAHSHVTIFTVDPKRRVTMLEGALIWNNTHEE 673


>gi|163795672|ref|ZP_02189637.1| multi-sensor hybrid histidine kinase [alpha proteobacterium BAL199]
 gi|159178968|gb|EDP63503.1| multi-sensor hybrid histidine kinase [alpha proteobacterium BAL199]
          Length = 1188

 Score =  337 bits (864), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 129/774 (16%), Positives = 257/774 (33%), Gaps = 77/774 (9%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFK-MIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWY 144
           W I+  G     S +  +  G      M       +      +     +   ++      
Sbjct: 143 WRIETPGDRHVWSAQTYRIHGIEPGTPMSSANASALYHPDDRERVAAAVNQAIRFGVDIA 202

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            +  +   +GT   V           R+ + +     G++         R      ++  
Sbjct: 203 FEAKIIWPDGTVRKVACR--GTTERGRDGKATAV--VGVLQDLTDQIAARETLAERNRAL 258

Query: 205 SHLHEIKKGH----SSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK----- 255
           + L E  +      S  ++    + + +            + L          +      
Sbjct: 259 AILRETVEIVPYSISVYDEHDRFVLANRKYFELYPYLENETKLIGKTFEDVLRISLQNKV 318

Query: 256 ---TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
                      +  ++             +     ++  ++ N   S   +S R   +  
Sbjct: 319 IMDRTALEDPENYVAARMADRRGGLPMAERRLANGHWYLIRENRTTSGHTISTRIDITEQ 378

Query: 313 AYFDEGENL----TPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSV--DDIEIAGG 365
                           T+D  P     +     L   N +F+ L   +    +      G
Sbjct: 379 KQAQLELGRTMEVLQATLDTMPNALIAFDADNRLMAWNSAFVSLVGVEPERFERGRPLRG 438

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
           L+  + A   S    I+P+ L+ + R+           + N     A+   P        
Sbjct: 439 LTKDVLAKLPSTETGIRPMFLHIARRSPADFE-----WRRNDGEIYAVLGRPMPNG---- 489

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
                  +       R  + +      +L + LE  S+G A+ +   I++  N    +++
Sbjct: 490 ---GYVTLFRNVTTERRAQVRAAQFEHRLSNALELMSEGFALFDANDILILCNETYRRMY 546

Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL------ 539
           G     I  +P   F++    +         +  +     E++ L     ++        
Sbjct: 547 GKSTAYI--RPGRRFVDIVRDAAATGQFPAAVGREEEWVAERLELHRNPPDQPTLQALAD 604

Query: 540 -SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI--------------------- 577
             + ++ +             DI+E  + +N L  A+                       
Sbjct: 605 GRVLLVAENRTSDGGSVGIRSDITERVRTENDLRAARDELEEQAQSLRDLAEQIDAARLR 664

Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
           AE+  + KS FLA +SHE+RTP+T ++G  E+                Y   +  S   +
Sbjct: 665 AEEAGAAKSRFLAVMSHELRTPMTGLLGMIELASRTELSK----EQQGYVRIMRDSAETL 720

Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-R 696
           L ++ND+LD SK+E+GK+ L     + ++ + +   L Q  A+ K +++      ++P  
Sbjct: 721 LALLNDILDFSKLEAGKVQLEEITFAPEQIIGDVFGLFQAQASAKGLVLEADLRPSVPAW 780

Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN--EEVIL--RVRDTGVGMTNYE 752
           +  D   VKQI  N++SNAI FT  G +I +    T      V L   V DTG G+    
Sbjct: 781 VRGDPLRVKQILSNLISNAIKFTTKG-RITVRLGATEGPSGLVRLQGEVIDTGQGIAAGV 839

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           LE   + F Q  +S   +  GTGLGL +++ + +   G   + S   +G++   
Sbjct: 840 LEHLFQAFEQGDSSTTRQFGGTGLGLAISRRLAEGMGGSITVESELGRGSVFRF 893



 Score =  127 bits (318), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 51/526 (9%), Positives = 131/526 (24%), Gaps = 55/526 (10%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D  G +   +    +  G      IG     + +    DP      +L  +   +     
Sbjct: 32  DPAGTIVAWNPAAERLFGIVTTDAIG-GPRSLIEPED-DPAGWFDGVLGGRPRRFRGRR- 88

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
              +  +   P+D+ A PI + +    G     +V   R      +       +      
Sbjct: 89  --TDAQHNPFPVDVTASPIVNADGAVQG-----VVQTLRRAPMEDSRPLIELAEDMAWIG 141

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
             +  +  ++  +   + +            ++ +  Y   D                 +
Sbjct: 142 HWRIETPGDRHVWSAQTYRIHGIEPGTPMSSANASALYHPDDRERVAAAVNQAIRFGVDI 201

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH-------PSLSAYFDEGENLT 322
             +      +           T +    ++   +                A  +    + 
Sbjct: 202 AFEAKIIWPDGTVRKVACRGTTERGRDGKATAVVGVLQDLTDQIAARETLAERNRALAIL 261

Query: 323 PETVDKCPIPFFVYSH-GNLFYANPSFLLLT----------KYKSVDDIEIAGGLSTLLD 371
            ETV+  P    VY        AN  +  L                D + I+     ++D
Sbjct: 262 RETVEIVPYSISVYDEHDRFVLANRKYFELYPYLENETKLIGKTFEDVLRISLQNKVIMD 321

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
              L D        +         A  RL    W            +        +    
Sbjct: 322 RTALEDPENYVAARMADRRGGLPMAERRLANGHW------------YLIRENRTTSGHTI 369

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
               +  + +  + ++   +  L + L+   + +   + +  +++ N A   L G   E 
Sbjct: 370 STRIDITEQKQAQLELGRTMEVLQATLDTMPNALIAFDADNRLMAWNSAFVSLVGVEPER 429

Query: 492 I-LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK------ITLGSTKEEKLLSLRII 544
               +P            +   L    +      L               + ++ ++   
Sbjct: 430 FERGRPLRGL-----TKDVLAKLPSTETGIRPMFLHIARRSPADFEWRRNDGEIYAVLGR 484

Query: 545 IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
                 +  Y     +++  ++ + + +  +          S+  A
Sbjct: 485 PMP---NGGYVTLFRNVTTERRAQVRAAQFEHRLSNALELMSEGFA 527



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/126 (11%), Positives = 40/126 (31%), Gaps = 6/126 (4%)

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           S+++A  D I   +  G I++ N A  +LFG    D +  P ++   ++ P+     +  
Sbjct: 19  SLVDAIDDAIIAFDPAGTIVAWNPAAERLFGIVTTDAIGGPRSLIEPEDDPAGWFDGVLG 78

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575
                 R         +  +     + +    +  +      +         ++     +
Sbjct: 79  GRPRRFRGRR------TDAQHNPFPVDVTASPIVNADGAVQGVVQTLRRAPMEDSRPLIE 132

Query: 576 KIAEKE 581
              +  
Sbjct: 133 LAEDMA 138


>gi|293606829|ref|ZP_06689180.1| sensor histidine kinase with CheB and CheR activity [Achromobacter
            piechaudii ATCC 43553]
 gi|292814833|gb|EFF73963.1| sensor histidine kinase with CheB and CheR activity [Achromobacter
            piechaudii ATCC 43553]
          Length = 1372

 Score =  337 bits (864), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 120/628 (19%), Positives = 224/628 (35%), Gaps = 24/628 (3%)

Query: 202  KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
            + F H          +  E  D+ S +   P +     ++ L        + L+      
Sbjct: 629  RPFRHEETANDYMLVLFDEVEDVMSPEGVAPTVGASAVLTQLEAELQGTKEQLQATIEQS 688

Query: 262  LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA--YFDEGE 319
             TS E      E+   IN    +  +   T +   +   E L   N    S      +  
Sbjct: 689  ETSTEELKASNEELQAINEELRSATEELETGKEELQSVNEELITVNAELKSKVDETAKIN 748

Query: 320  NLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
            +     +    I   FV    ++ +  P    +    + D       ++  LD P ++ +
Sbjct: 749  DDLQNLIASTDIATVFVDRKMHIQWFTPRATDVFNVITSDAGRSLLDITHRLDYPDMARD 808

Query: 379  NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
             A              +  A    ++ +         +P+  A    E         +  
Sbjct: 809  AA----------GVFESLRAVEREVRSDAGRWYLARLLPYRSAEHRIE--GAVLTFIDIT 856

Query: 439  DTRINKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
            D R  + ++ +    L  + E+  D GI  ++ EGII + N     +FGY   + + K F
Sbjct: 857  DRRQAEDQVRLGEAHLKLMTESARDFGILTLDSEGIITNWNVGAETMFGYNRTEAIGKSF 916

Query: 498  TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL--PFSSCYS 555
            ++               E+                 K+  L+     + ++  P    ++
Sbjct: 917  SIIFTDADIEAGRPE-KELERARQIGYAPDERWHRRKDGGLIFCTGGVNRMDDPDYQGFA 975

Query: 556  LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
              + D+++ K    +       A  ++  K +F A VSHE++ PL  I   +E++     
Sbjct: 976  KIVRDVTDLKLRDAEQESRLDRARADNVLKDEFFAMVSHELKHPLNLIQLNAELLARTPA 1035

Query: 616  GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
                +P     A+ I RS      I++DLLD+S++ +GK+ L+     +    +  + ++
Sbjct: 1036 VR-NSPGAARSADLIQRSVKGQARIIDDLLDLSRVRTGKLALNQSIFDITAIATNILEVL 1094

Query: 676  QLYANEKRILIRTSFANN-IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
               A    + +R+ F       + AD   V+QI  N+L+N I FTP GG + +       
Sbjct: 1095 DPVARAAGLTLRSEFDAGRAIHLNADPLRVEQIIWNLLNNGIKFTPPGGIVTLRLEVED- 1153

Query: 735  EEVILRVRDTGVGMTNYELEKAMKPFGQIP-NSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
              + L V DTG G+    L K    F Q     + +   G G+GL +A  +V A+ G   
Sbjct: 1154 ARLRLDVVDTGQGIDAQFLGKVFDMFSQADLRQRNLASPGLGIGLAVASELVKAHGGTIQ 1213

Query: 794  IFS-TPAKGTLIEIIFPLYDTSHPHDCI 820
              S    +G    +  PL         +
Sbjct: 1214 AHSDGHGRGARFTVRMPLASAQQEESSL 1241



 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/248 (9%), Positives = 63/248 (25%), Gaps = 13/248 (5%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            +D+ G +   +       G    + IG     +     I+      +L + +   Y    
Sbjct: 887  LDSEGIITNWNVGAETMFGYNRTEAIGKSFSIIFTDADIEAGRPEKELERARQIGYAPDE 946

Query: 149  LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFG-IVHVNRVDNDPRALGKRLDKKFSHL 207
             W        +        +   +     ++GF  IV          A  +    +    
Sbjct: 947  RWHRRKDGGLIFCTGGVNRMDDPD-----YQGFAKIVRDVTDLKLRDAEQESRLDRARA- 1000

Query: 208  HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK--YPLLTSE 265
                      E         + P   +++  ++ + T    +     ++       +  +
Sbjct: 1001 ----DNVLKDEFFAMVSHELKHPLNLIQLNAELLARTPAVRNSPGAARSADLIQRSVKGQ 1056

Query: 266  ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
               + +  D   +   +    Q    +   +    E L      +      E +      
Sbjct: 1057 ARIIDDLLDLSRVRTGKLALNQSIFDITAIATNILEVLDPVARAAGLTLRSEFDAGRAIH 1116

Query: 326  VDKCPIPF 333
            ++  P+  
Sbjct: 1117 LNADPLRV 1124


>gi|309789734|ref|ZP_07684314.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides DG6]
 gi|308228220|gb|EFO81868.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides DG6]
          Length = 1491

 Score =  337 bits (864), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 119/561 (21%), Positives = 228/561 (40%), Gaps = 37/561 (6%)

Query: 270  PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
               E        Q           +    +  ++   +  + +         T   +D+ 
Sbjct: 663  AVNEMIVRERDPQRLFTTACQIAVSRGGFTMAWVGLLDPTTHAVLPVASAGFTNGYLDQL 722

Query: 330  PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389
             I       G+   A    L    +   +DI     +            +++    L   
Sbjct: 723  QISLADNPRGHGPVAT--ALRTQHHVIANDIATDPRMEPWRANALKRGYSSVGVFPLIVR 780

Query: 390  DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449
             +     S     + +  +  + +            +         ++   R+ + ++  
Sbjct: 781  GQVRGVISLYASEVHFFDQAEIQLF------DEMANDLAFALEFTEQERQRRLAEEQLRT 834

Query: 450  EVMQLCSILEATSDGIAIINREGIILST--NRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
               +   +L A  D +  +  +G +L    N    +    P E  L +     L  +  +
Sbjct: 835  SEHRSRVLLNAIPDMMFRLGLDGRLLDYFGNP--EQRLYVPPEIFLGRMLNEILPPDVTA 892

Query: 508  VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQE 567
              N+ +  + +    QT E + L    + + +S    +            + DI+  KQ 
Sbjct: 893  QWNNAI--LAAPQGLQTFEYVLLI---DGEPVSFEARLVLNEDEHEVVAIVRDITARKQM 947

Query: 568  KNKLSHAKK------------------IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
            +  L H ++                     +    K DFLA +SHE+RTPL AI+  SE 
Sbjct: 948  ERDLLHERQSLARRVAERTEDLSRANQELARAVRAKDDFLANMSHELRTPLNAILALSEG 1007

Query: 610  IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
            +  Q  GPL N R I     I+ SG  +L ++ND+LD+SKIE+G+M+L  + + + +  +
Sbjct: 1008 MLEQLRGPL-NERQIAALRNIESSGRHLLALINDILDLSKIEAGRMDLQIDQILVSDVCA 1066

Query: 670  EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
             ++  ++  A++K+  I      +  R  AD R +KQ+ +N+L+NA+ FTP GGQI +  
Sbjct: 1067 ASMIFIKEQASKKQQKINLIQEESGLRFYADQRRLKQMLVNLLTNAVKFTPVGGQIDLIV 1126

Query: 730  THTSNEEVI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
               +++ V+ + V DTG+G+++ E+++  KPF Q+ +    + EGTGLGL L + + + +
Sbjct: 1127 KADASQGVLAITVADTGIGISDEEMQRLFKPFIQLDSGLTRQHEGTGLGLALVRRLAELH 1186

Query: 789  MGKFYIFSTPAKGTLIEIIFP 809
             G   + STP  G+   I+ P
Sbjct: 1187 GGSVSLESTPGVGSRFTILLP 1207



 Score = 74.3 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 53/401 (13%), Positives = 107/401 (26%), Gaps = 25/401 (6%)

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHL-RMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
           S L E     S V    Y   S+++   H  RM  +V      Y      +   +     
Sbjct: 266 SPLLERSPTISLVVWAPYIRNSERAAFEHSQRMIGRVGFSITQYTPTGQFIPASQRAFYF 325

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
                 P   +   +  +  ++   + TL   S+     L+                L  
Sbjct: 326 PGTFFEPYTINQVALGFDVASEPVRYATLTRASQSGQSMLTSPIRLVSRPQAPPHILLIS 385

Query: 324 ET-VDKCPIPFFVYSHGN---LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
                  P+            + +A+     L  Y        A  L             
Sbjct: 386 PIYASNAPLASIAEREAALRGIVFASIQMDTLLSYALNHLTPRAIDLVFYDVTDSAPQLL 445

Query: 380 AIKPV----MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
           A +P          D     A     ++     +   +T             +    +  
Sbjct: 446 AYRPFDPQQTAAPRDPDAALAEGYSQSLTIFGRHWQVLTRADPTYIADIRGRIAWPILSV 505

Query: 436 EDVDTR----------INKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKL 484
                            N + +        +I+    D IA+ +      +  N A  + 
Sbjct: 506 GLASVIAFLLFMAAWLRNTQALRAREEIFSAIVGQAVDAIALFDVATERFVEFNTAAHEG 565

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
            GY  ++  +K       Q++ + + H + +IL+          T    K+  L  + + 
Sbjct: 566 LGYTRDEFAQKSLLDIQAQHSSAEIRHNIEQILTEGSAS---FETQHLHKDGSLRMVEVR 622

Query: 545 IKKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
            ++L        +    DI+E K +  +L    +     S+
Sbjct: 623 ARRLNLQRRNYIAGVWTDITERKADDLQLRKLNRAYMVLSA 663


>gi|29375769|ref|NP_814923.1| sensory box histidine kinase VicK [Enterococcus faecalis V583]
 gi|227552978|ref|ZP_03983027.1| histidine kinase [Enterococcus faecalis HH22]
 gi|257419020|ref|ZP_05596014.1| PAS/PAC sensor signal transduction histidine kinase [Enterococcus
           faecalis T11]
 gi|29343230|gb|AAO80993.1| sensory box histidine kinase VicK [Enterococcus faecalis V583]
 gi|227177887|gb|EEI58859.1| histidine kinase [Enterococcus faecalis HH22]
 gi|257160848|gb|EEU90808.1| PAS/PAC sensor signal transduction histidine kinase [Enterococcus
           faecalis T11]
 gi|315575747|gb|EFU87938.1| PAS domain S-box [Enterococcus faecalis TX0309B]
 gi|315579809|gb|EFU92000.1| PAS domain S-box [Enterococcus faecalis TX0309A]
          Length = 609

 Score =  337 bits (864), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 83/418 (19%), Positives = 180/418 (43%), Gaps = 29/418 (6%)

Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
              R   I+  R +      +     ++  +         E ++    +  ME E  +L 
Sbjct: 207 GEMREQAIRIARGDYAG--KVEVHGKDELGQLAETFNQLSERIEE--AQETMEAERNRLD 262

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           S+L   +DG+   +R G +++ N     L     E+++       L+          L +
Sbjct: 263 SVLTHMTDGVIATDRRGKVITINEMALSLLNVKNENVIGTSLLELLDIEEDYT----LRK 318

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSH 573
           +L       +++ T    +++ ++ +   + +      +     +HD++E ++ + +   
Sbjct: 319 LLEEPDELLIDRSTSDREEDQMIIRVDFTMIRRESGFITGLVCVLHDVTEQEKNERE--- 375

Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
                      + +F++ VSHE+RTPLT++  + E +    +          +       
Sbjct: 376 -----------RREFVSNVSHELRTPLTSMRSYIEALSEGAW--ENPEIAPNFLKVTLEE 422

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN--EKRILIRTSFA 691
            + ++ ++NDLL++S+++SG  +L  E V+ +E ++  +    +     +K   I   F 
Sbjct: 423 TDRMIRMINDLLNLSRMDSGNTHLQLEYVNFNELINFVLDRFDMMIENEQKNYKICREFT 482

Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751
                +  D   V Q+  NIL+NAI ++P GG I       ++  V+  + D G+G+   
Sbjct: 483 KRDLWVELDTDKVIQVLDNILNNAIKYSPDGGVITCRL-VETHNNVVFSISDQGLGIPKK 541

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +L K  + F ++  ++     GTGLGL ++K ++ A+ G  ++ ST  +G+   I  P
Sbjct: 542 DLGKVFERFYRVDKARARAQGGTGLGLAISKEVIRAHNGSIWVESTEGEGSTFYISLP 599



 Score = 38.1 bits (87), Expect = 7.0,   Method: Composition-based stats.
 Identities = 20/143 (13%), Positives = 43/143 (30%), Gaps = 7/143 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            D  G +  I+E     +      +IG  L ++   L I+ +  +  LL+  +      +
Sbjct: 275 TDRRGKVITINEMALSLLNVKNENVIGTSLLEL---LDIEEDYTLRKLLEEPDELLIDRS 331

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               E   + + +D     I   +   +G     ++H            +      SH  
Sbjct: 332 TSDREEDQMIIRVDFTM--IRRESGFITGL--VCVLHDVTEQEKNERERREFVSNVSHEL 387

Query: 209 EIKKGHSSVEKEKYDIFSQQSPP 231
                      E     + ++P 
Sbjct: 388 RTPLTSMRSYIEALSEGAWENPE 410


>gi|150019295|ref|YP_001311549.1| multi-sensor signal transduction histidine kinase [Clostridium
           beijerinckii NCIMB 8052]
 gi|149905760|gb|ABR36593.1| multi-sensor signal transduction histidine kinase [Clostridium
           beijerinckii NCIMB 8052]
          Length = 568

 Score =  337 bits (864), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 88/382 (23%), Positives = 172/382 (45%), Gaps = 12/382 (3%)

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             + +   +K++   + L +I  + SD I I +  GII++ N   ++L+GY  ++++   
Sbjct: 155 IDELKQTNKKLKKSEVYLSTIFNSVSDAILIHDFNGIIVNVNDTANRLYGYLHDELIGMS 214

Query: 497 FTVFLEQNTPSVMNHYL---TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL--PFS 551
               + +N+P + +  L    +     +   +    +   K  K   +    + +     
Sbjct: 215 IKDIISKNSPYIYDDILKLINDRKKNKINTPVTLEAISIDKNHKEFWVESNSRAIIFNEQ 274

Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
                T+ DI+E K  +     +K+ A +    +++F A +SHE+RTPL  I+G  ++++
Sbjct: 275 KAIIATVRDITERKNTE---LKSKEEALELEKLRTEFFANISHELRTPLNIILGVIQILR 331

Query: 612 NQRFG---PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
                   P+   + I   +   ++   +L ++N+L+D +K+++G   +     ++   V
Sbjct: 332 RDLLDKEKPIDKGKIINNIDIERQNCFRLLRLINNLIDSTKLDAGHFEIDMINCNIVSVV 391

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
            E    V  Y     I +          I  D   +++I LN+LSN I FT   G I ++
Sbjct: 392 EEITLSVAGYIINNNINLIFDTDVEEKIIACDPDKIERIMLNLLSNCIKFTDDDGSIFVN 451

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                 E + L V DTG+G+   ++E     F Q+  S     EG+G+GL L K++V+ +
Sbjct: 452 I-FDGEEYITLSVEDTGIGIPEEKVEIIFDRFRQVDKSFTRNYEGSGIGLSLVKSLVEMH 510

Query: 789 MGKFYIFSTPAKGTLIEIIFPL 810
            G   + S    GT   I  P+
Sbjct: 511 DGTISVESKYGVGTKFTIKLPV 532


>gi|57234234|ref|YP_181736.1| sensory box sensor histidine kinase/response regulator
            [Dehalococcoides ethenogenes 195]
 gi|57224682|gb|AAW39739.1| sensory box sensor histidine kinase/response regulator
            [Dehalococcoides ethenogenes 195]
          Length = 1258

 Score =  337 bits (864), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 113/753 (15%), Positives = 245/753 (32%), Gaps = 69/753 (9%)

Query: 87   WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKRQNTW-Y 144
            W  D    L   S    +  G  +  +    +  +       D +  + DL+K    +  
Sbjct: 406  WEFDLANGLVYPSAGAREIYGLESESITIPFVQQIPLSEYRSDLDKAMNDLIKHNIPYDI 465

Query: 145  GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
                  P +G  LYV     ++  Y   R       FG +           L +  + +F
Sbjct: 466  EFKIKRPTDGAVLYV----HSIAEYDAKRNLV----FGTIQDITKRKQAEELLRESEARF 517

Query: 205  SHLHEIKKGHSSVEKEKYDIFSQQSPP--PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
                +     +++    +                 +++++L+       D    +   L 
Sbjct: 518  RSTFDQSPIGAAIYDLGFKYRQVNDKFCKMLDYSDDELTNLSVRDITHPDDWPKDLIHLN 577

Query: 263  TSEESSLPEQE---DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
              +   +   E    +   + + +        +++       YL+     +     ++  
Sbjct: 578  QLKNREISRYETDKRYIHKSGSVFWVHLSVAGIRDAGGNLLYYLAMIVDITARKEAEDAL 637

Query: 320  NLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
                   +             G L  AN + +    Y     + +         A  LSD
Sbjct: 638  QKYKLIAEDSRDIILFLDRQTGRLLEANTAAVKSYGYSRKQLLSMRIQDLRAPQARILSD 697

Query: 378  NNAIK--------PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
            +   +          M  R D +                 +L                  
Sbjct: 698  SEFEQAYAHGMLFETMHRRKDGSTFPVEVSSRGADIEGTTTL------------------ 739

Query: 430  QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-----GIILSTNRAVSKL 484
               I  +  + +  ++ +   +     +  + +D I +   E     G  +  N A   +
Sbjct: 740  -INIIRDTTERKQAEKALSESLQSYQVLFNSVTDAILVYQPEADYSPGKFIEMNDAAVAM 798

Query: 485  FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
             GY  +++L+      +       +N +   +   +    L       TK  + + + + 
Sbjct: 799  LGYSRQEMLQMNPLDVVS-KGIPTVNVFTDTMRQAEKNSELVAEQTLKTKSGETIPVELH 857

Query: 545  --IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS--HKSDFLARVSHEIRTPL 600
              + +            DISE K+ + +    +  +E  S      +  A ++HEI  PL
Sbjct: 858  SRMFEFGGKHTVITLARDISERKRLEEEQKKLRHQSEMSSRLAAIGEMAAGIAHEINNPL 917

Query: 601  TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
            T +IGF+ ++ ++   P   P  +E    I+     V++IV  +L  ++    +      
Sbjct: 918  TGVIGFASILMDREDLP---PDAMEQLQIINSGSQRVVEIVKRMLTFAR----QSKPVRS 970

Query: 661  PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA---IH 717
             +++ E +   + L         I +   +   +P +  D   ++Q+ LN++ NA   + 
Sbjct: 971  SINITELIDNTLELRSYVLKTANIDVVRHYEPGLPLLTVDSGQIQQVILNLILNAEYSMK 1030

Query: 718  FTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
                 G + I+ + T  + + +  RD G+GM+   L K  +PF          GEG+GLG
Sbjct: 1031 KAHEKGTLTITVSRT-GDRIRMSFRDNGMGMSAETLGKLFQPFFTTKEP----GEGSGLG 1085

Query: 778  LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            L L+  ++  + G     S P +G    +  P+
Sbjct: 1086 LSLSHGIILEHDGTIRGESIPGEGAEFIVELPI 1118



 Score =  150 bits (380), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 62/504 (12%), Positives = 138/504 (27%), Gaps = 25/504 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D+ G L E+++     +G    ++ G    D      ID       + K   T   +  
Sbjct: 154 LDSEGRLIEVNQVWLDEMGYTKEEVAGRWFGDFLRPDQIDLFKKRFAVFKNTGTAATEFY 213

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           +   +G+   V I  +          F   +    +      +      +   +K+  L 
Sbjct: 214 MNRKDGS--VVLIAFSGKIARDTKGNFK--QTHCTLQDITQRHLAEEAIRESQRKYQALF 269

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS---------SLTEYYAHKDDVLKTEKY 259
           E     + V       ++ +    +    + +          S+ E +      L  E+ 
Sbjct: 270 ESIGDAAFVCYIDDHKWADEFIELNKVASDMLGYTHEQLLSMSVKELFFSLPSDLILEET 329

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
                    +  +             +  F  L +   +       R+  S      E E
Sbjct: 330 TDKLYRHKVITRESRLRHKCGQAIPVEMTFH-LFDLQGKPAVLTLARDITSRKEAARELE 388

Query: 320 NLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
                 V    +  F Y   +L  AN         + +  +E        +    LS+  
Sbjct: 389 QSHSRLVKAEQVAGFGYWEFDL--ANGLVYPSAGAREIYGLESESITIPFVQQIPLSEYR 446

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
           +     +    +  I         +      L +  I    A +        G   +   
Sbjct: 447 SDLDKAMNDLIKHNIPYDIEFKIKRPTDGAVLYVHSIAEYDAKRN----LVFGTIQDITK 502

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
            +  +  +     +  S  + +  G AI +        N    K+  Y  +++       
Sbjct: 503 RKQAEELLRESEARFRSTFDQSPIGAAIYDLGFKYRQVNDKFCKMLDYSDDELTNLSVRD 562

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YS 555
               +       +L ++         E       K   +  + + +  +  +      Y 
Sbjct: 563 ITHPDDWPKDLIHLNQL-KNREISRYETDKRYIHKSGSVFWVHLSVAGIRDAGGNLLYYL 621

Query: 556 LTMHDISEWKQEKNKLSHAKKIAE 579
             + DI+  K+ ++ L   K IAE
Sbjct: 622 AMIVDITARKEAEDALQKYKLIAE 645



 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 50/513 (9%), Positives = 139/513 (27%), Gaps = 49/513 (9%)

Query: 89  IDAH-GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
           IDA  G + + +  L + +G     +IG +L ++    HI  N    ++L+ ++    + 
Sbjct: 29  IDAESGKITDANPFLFEMLGYDTDAIIGKKLWEIGLFHHIVSNRKAFEVLQAKSGIRHED 88

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                +   +      +       ++          +             ++ ++++   
Sbjct: 89  VYLETKSGQIRQAEFTSNTYYVGEDKILQ-----CNIRDITERKLAEEELRKTEERYREF 143

Query: 208 HEIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
           ++           +  +              K +V+        + D +   K      +
Sbjct: 144 YQKSPIGYQSLDSEGRLIEVNQVWLDEMGYTKEEVAGRWFGDFLRPDQIDLFKKRFAVFK 203

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF-----EYLSHRNHPSLSAYFDEGEN 320
            +     E +            + G +  ++K +F                     E + 
Sbjct: 204 NTGTAATEFYMNRKDGSVVLIAFSGKIARDTKGNFKQTHCTLQDITQRHLAEEAIRESQR 263

Query: 321 LTPETVDKCPIPFFVY------SHGNLFYANPSFLLLTKYKSVDDI-----EIAGGLSTL 369
                 +      FV               N     +  Y     +     E+   L + 
Sbjct: 264 KYQALFESIGDAAFVCYIDDHKWADEFIELNKVASDMLGYTHEQLLSMSVKELFFSLPSD 323

Query: 370 LDAPKLSD-----NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
           L   + +D         +   L       I      H      + +              
Sbjct: 324 LILEETTDKLYRHKVITRESRLRHKCGQAIPVEMTFHLFDLQGKPA-------------- 369

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
                   +  +    +   R++E    +L    +    G    +    ++  +    ++
Sbjct: 370 -----VLTLARDITSRKEAARELEQSHSRLVKAEQVAGFGYWEFDLANGLVYPSAGAREI 424

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
           +G   E I              S ++  + +++  ++   +E   +    +  +L +  I
Sbjct: 425 YGLESESITIPFVQQIPLSEYRSDLDKAMNDLIKHNIPYDIEFK-IKRPTDGAVLYVHSI 483

Query: 545 IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI 577
            +     +    T+ DI++ KQ +  L  ++  
Sbjct: 484 AEYDAKRNLVFGTIQDITKRKQAEELLRESEAR 516



 Score =  101 bits (251), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 33/288 (11%), Positives = 77/288 (26%), Gaps = 18/288 (6%)

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEI 362
                        + E    E   K PI +  + S G L   N  +L    Y   +    
Sbjct: 122 DITERKLAEEELRKTEERYREFYQKSPIGYQSLDSEGRLIEVNQVWLDEMGYTKEEVAGR 181

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
             G       P   D    +  +    +    A    ++       + + + F      +
Sbjct: 182 WFGD---FLRPDQIDLFKKRFAVF--KNTGTAATEFYMNR---KDGSVVLIAFSGKIARD 233

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG--IAIINRE---GIILST 477
                   +    +     + +  +     +  ++ E+  D   +  I+        +  
Sbjct: 234 TKGNFKQTHCTLQDITQRHLAEEAIRESQRKYQALFESIGDAAFVCYIDDHKWADEFIEL 293

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
           N+  S + GY  E +L              ++         L   + + + +    K  +
Sbjct: 294 NKVASDMLGYTHEQLLSMSVKELFFSLPSDLILE--ETTDKLYRHKVITRESRLRHKCGQ 351

Query: 538 LLSLRII--IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
            + + +   +  L           DI+  K+   +L  +     K   
Sbjct: 352 AIPVEMTFHLFDLQGKPAVLTLARDITSRKEAARELEQSHSRLVKAEQ 399



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 27/282 (9%), Positives = 78/282 (27%), Gaps = 18/282 (6%)

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYSH--GNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
               +  E       +       +     G +  ANP    +  Y +   I        L
Sbjct: 5   RPNPEVSELRYRRLFETAQDGILIIDAESGKITDANPFLFEMLGYDTDAIIGKKLWEIGL 64

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
                 +         + ++          L T       +   +   +   ++      
Sbjct: 65  FHHIVSNRKAFE----VLQAKSGIRHEDVYLETKSGQIRQAEFTSNTYYVGEDKI----- 115

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
                 +  + ++ + ++     +     + +  G   ++ EG ++  N+      GY  
Sbjct: 116 LQCNIRDITERKLAEEELRKTEERYREFYQKSPIGYQSLDSEGRLIEVNQVWLDEMGYTK 175

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
           E++  + F  FL  +   +         +     T       + K+  ++ +    K   
Sbjct: 176 EEVAGRWFGDFLRPDQIDLFKKRFAVFKNTGTAAT---EFYMNRKDGSVVLIAFSGKIAR 232

Query: 550 FSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
            +         T+ DI++    +  +  +++  +       D
Sbjct: 233 DTKGNFKQTHCTLQDITQRHLAEEAIRESQRKYQALFESIGD 274


>gi|298489788|ref|YP_003719965.1| multi-sensor hybrid histidine kinase ['Nostoc azollae' 0708]
 gi|298231706|gb|ADI62842.1| multi-sensor hybrid histidine kinase ['Nostoc azollae' 0708]
          Length = 1418

 Score =  337 bits (864), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 105/763 (13%), Positives = 242/763 (31%), Gaps = 76/763 (9%)

Query: 96   KEISEELPKTIGNYAFKM--IGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG--KTTLWP 151
              ++    K  G     M        +       D +  I  +  +++   G  +  +  
Sbjct: 562  VYVNPAYEKFWGRSRASMGNNPKSWIEGVHP--QDRDRVIAQIQSQKDNESGVLEYRVLR 619

Query: 152  IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
             +G+  ++        I +   +   F G  I           A  K+ ++KF +  E  
Sbjct: 620  PDGSISWLW--ARRFTIKNEQGQIQYFGG--IAEDITEHKQTEAALKKTEEKFRYFTENS 675

Query: 212  KGHSSVE----------KEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
                 +              Y+    +S                 +    D +  E    
Sbjct: 676  DTLIWMASKDSKETLYINPAYEKIWGRSCQSLRENPQSW--REAIHPEDRDRILAEIEEH 733

Query: 262  LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
                E +   +      N +          ++N   E   Y S     +     +E    
Sbjct: 734  HQKGEGA-NLEYRIVQPNGSIRWIWGRCFPVKNEQGELDYYGSLTEDITDRKLAEESLRD 792

Query: 322  TPE----TVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
            +       ++   +  +  +         + +   L           +         P+ 
Sbjct: 793  SETRLTLALENANMGIWECNLITDQ-CICSDNVGPLYGLPKGSVCPSSHEEFFNFFYPED 851

Query: 376  SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
             +            +       A  + + W   +   +        NQ  + +   G   
Sbjct: 852  REFCIQAVKRAIEQEGEF----AVEYRVVWPDGSLHWLRGTGKVYHNQQGQPIRMIGTTR 907

Query: 436  EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
            +  + +  + ++  +     ++L+  +D I + + +  IL  N+   +++G+   + + K
Sbjct: 908  DISERKETEHQLYEQ----AALLDIATDAIFVRDFQTKILFWNQGAERIYGWQKHEAVGK 963

Query: 496  PFTVFLEQ-NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC- 553
                      T    +  L  ++ L    T +      TK  + + +      +  +   
Sbjct: 964  NLKDLFCSKTTQQQESSALRTVVKLG---TWQGELRKKTKLGQEIIVESRWTLMFDADGQ 1020

Query: 554  ---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
                 +   DI+E KQ + +    +++              ++H++   LT I+G ++++
Sbjct: 1021 PKSILIVDSDITEKKQLEEQFFRTQRL-----ESIGTLAGGIAHDLNNILTPILGAAQLL 1075

Query: 611  KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
            K +        R+ +    I+ +      +V  +L  ++   G+  +    V +   ++E
Sbjct: 1076 KGR--FAKDEERHPQLLAIIENNAQRGAALVKQVLSFARGLKGERGI----VQVKHLIAE 1129

Query: 671  AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST- 729
             I  +      K I   T    N+  +  D   + Q+ +N++ NA    P GG + I+T 
Sbjct: 1130 IIQ-IGKQTFPKSIEFTTQIPENLWTVSGDTTQLHQVLMNLVVNARDAMPEGGTLTITTE 1188

Query: 730  -------------THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
                                +++ V DTGVGMT   L++  +PF      +     GTGL
Sbjct: 1189 NIYIDEAYTRMLIESKIGNYIVITVTDTGVGMTKEILDRIFEPFFTTKEFK----GGTGL 1244

Query: 777  GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819
            GL  A  ++ ++ G   + S   KG+  ++  P  ++    D 
Sbjct: 1245 GLSTALGILKSHNGFVTVSSQVGKGSTFKVFLPSVESPQVPDI 1287



 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 35/309 (11%), Positives = 84/309 (27%), Gaps = 17/309 (5%)

Query: 280 LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV----DKCPIPFFV 335
           L + + +      +   +      +                 + ET     +      ++
Sbjct: 365 LRRSSDELEQRVAERRRELIVANQALEQEIKERKETQAALRKSEETFRQFAENLEAYIWI 424

Query: 336 YSHG--NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393
            S     LFY NP++  +         E        +    L    A   V         
Sbjct: 425 CSQDCSTLFYINPAYEKIWGRSCQSLWENPLSWIEAVHPEDLEPMMA--EVEKQHQKGEN 482

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
           I+   R+  +     +   +    F   N+  +     GI  +  + +  +  +     +
Sbjct: 483 ISVQYRIIRL---DGSIRWLWSRRFPIKNEQGQIQYYGGIGEDITERKQTEAAVRESEYK 539

Query: 454 LCSILEATSDGIAIINREGI-ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
                +     + I + +    +  N A  K +G     +       ++E   P   +  
Sbjct: 540 FHQFADNIQAVVWIASVDCTENVYVNPAYEKFWGRSRASM-GNNPKSWIEGVHPQDRDRV 598

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEK 568
           + +I S    ++          +  +  L      +         +     DI+E KQ +
Sbjct: 599 IAQIQSQKDNESGVLEYRVLRPDGSISWLWARRFTIKNEQGQIQYFGGIAEDITEHKQTE 658

Query: 569 NKLSHAKKI 577
             L   ++ 
Sbjct: 659 AALKKTEEK 667



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/341 (10%), Positives = 90/341 (26%), Gaps = 44/341 (12%)

Query: 277 TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY 336
            IN       +    ++   ++  + L+     +     +       +  +  P  F V 
Sbjct: 209 QINEELQQTLEELQIIKEELRQQNKQLATAREIT-----ESERRRYQDLFEFTPNGFLVT 263

Query: 337 S-HGNLFYANPSFLLLT-------KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388
              G +  AN +   L          K +           +L    LS +     + +  
Sbjct: 264 DKLGVIQEANHAASSLLCVHQKYLVGKPITIFLGQSDRHNVLSHLSLSQHFQEWEIYIQP 323

Query: 389 SDRTCIAASARLHTIQWNRENSLAMT----------------------FIPFEKANQFPE 426
            +     AS RL  +   +   L                                 +   
Sbjct: 324 REGVPFPASIRLRAVYDRQGQWLGWCWLICNISVQKQAEKTLRRSSDELEQRVAERRREL 383

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG-IILSTNRAVSKLF 485
            +    +E E  + +  +  +           E     I I +++   +   N A  K++
Sbjct: 384 IVANQALEQEIKERKETQAALRKSEETFRQFAENLEAYIWICSQDCSTLFYINPAYEKIW 443

Query: 486 GYPVEDILRKPFTVF--LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           G   + +   P +    +       M   + +        +++   +    +  +  L  
Sbjct: 444 GRSCQSLWENPLSWIEAVHPEDLEPMMAEVEKQHQKGENISVQYRIIRL--DGSIRWLWS 501

Query: 544 IIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEK 580
               +         Y     DI+E KQ +  +  ++    +
Sbjct: 502 RRFPIKNEQGQIQYYGGIGEDITERKQTEAAVRESEYKFHQ 542



 Score = 74.7 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 57/155 (36%), Gaps = 9/155 (5%)

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
                +   E E  +   + E T +G  + ++ G+I   N A S L     + ++ KP T
Sbjct: 234 QLATAREITESERRRYQDLFEFTPNGFLVTDKLGVIQEANHAASSLLCVHQKYLVGKPIT 293

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CY 554
           +FL Q+    +  +L+       +   E       +E       I ++ +         +
Sbjct: 294 IFLGQSDRHNVLSHLSL-----SQHFQEWEIYIQPREGVPFPASIRLRAVYDRQGQWLGW 348

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
              + +IS  KQ +  L  +    E+  + +   L
Sbjct: 349 CWLICNISVQKQAEKTLRRSSDELEQRVAERRREL 383


>gi|315029161|gb|EFT41093.1| PAS domain S-box [Enterococcus faecalis TX4000]
          Length = 609

 Score =  337 bits (864), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 84/418 (20%), Positives = 180/418 (43%), Gaps = 29/418 (6%)

Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
              R   I+  R +      +     ++  +         E ++    +  ME E   L 
Sbjct: 207 GEMREQAIRIARGDYAG--KVEVHGKDELGQLAETFNQLSERIEE--AQETMEAERNHLD 262

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           S+L   +DG+   +R G +++ N     L     E+++       L+          L +
Sbjct: 263 SVLTHMTDGVIATDRRGKVITINEMALSLLNVKNENVIGTSLLELLDIEEDYT----LRK 318

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSH 573
           +L       +++ T    +++ ++ +   + +      +     +HD++E ++ + +   
Sbjct: 319 LLEEPDELLIDRSTSDREEDQMIIRVDFTMIRRESGFITGLVCVLHDVTEQEKNERE--- 375

Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
                      + +F++ VSHE+RTPLT++  + E +    +          +       
Sbjct: 376 -----------RREFVSNVSHELRTPLTSMRSYIEALSEGAW--ENPEIAPNFLKVTLEE 422

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN--EKRILIRTSFA 691
            + ++ ++NDLL++S+++SG  +L  E V+ +E ++  +    +     +K   IR  F 
Sbjct: 423 TDRMIRMINDLLNLSRMDSGNTHLQLEYVNFNELINFVLDRFDMMIENEQKNYKIRREFT 482

Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751
                +  D   V Q+  NIL+NAI ++P GG I       ++  V+  + D G+G+   
Sbjct: 483 KRDLWVELDTDKVIQVLDNILNNAIKYSPDGGVITCRL-VETHNNVVFSISDQGLGIPKK 541

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +L K  + F ++  ++     GTGLGL ++K ++ A+ G  ++ ST  +G+   I  P
Sbjct: 542 DLGKVFERFYRVDKARARAQGGTGLGLAISKEVIRAHNGSIWVESTEGEGSTFYISLP 599



 Score = 37.7 bits (86), Expect = 7.4,   Method: Composition-based stats.
 Identities = 20/143 (13%), Positives = 43/143 (30%), Gaps = 7/143 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            D  G +  I+E     +      +IG  L ++   L I+ +  +  LL+  +      +
Sbjct: 275 TDRRGKVITINEMALSLLNVKNENVIGTSLLEL---LDIEEDYTLRKLLEEPDELLIDRS 331

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               E   + + +D     I   +   +G     ++H            +      SH  
Sbjct: 332 TSDREEDQMIIRVDFTM--IRRESGFITGL--VCVLHDVTEQEKNERERREFVSNVSHEL 387

Query: 209 EIKKGHSSVEKEKYDIFSQQSPP 231
                      E     + ++P 
Sbjct: 388 RTPLTSMRSYIEALSEGAWENPE 410


>gi|306840195|ref|ZP_07472975.1| PAS domain S-box-containing protein [Brucella sp. NF 2653]
 gi|306404726|gb|EFM61025.1| PAS domain S-box-containing protein [Brucella sp. NF 2653]
          Length = 769

 Score =  337 bits (864), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 123/543 (22%), Positives = 227/543 (41%), Gaps = 54/543 (9%)

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEI 362
                        + +      + +     + +       Y + S   +  Y++ D +  
Sbjct: 227 QAARAREADDLSGQIQRRIDMALARGRCGLWDWDMARGRIYWSRSMYEMLGYEAQDAVLP 286

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
            G ++ +++       +  +      +         R+  ++    + + M       + 
Sbjct: 287 FGDVAAIINEEDGDLYSIAEQA----AAGDISHVD-RVFRMRHADGSWVWMRVRAEIASE 341

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
                +   GI  +  +     ++     M++   +E  S+   + +    ++  N   S
Sbjct: 342 GD---LHLVGIAFDVSEQHRFAQQTAEADMRIREAIENISEAFVLWDANNRLVMANSKFS 398

Query: 483 KLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
           +  G PV  +    P         P      +    +    QT E+       + + L +
Sbjct: 399 EYAGLPVWTLKPGVPRNEVDAHTRPFTFERRMANEHNRAGGQTFERQL----SDGRWLQV 454

Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH---------------------------- 573
               ++            DI++ K  + +L                              
Sbjct: 455 N---ERRTQDGGMVSIGTDITQLKLHQERLVDSERRLMATVHDLSIARKGERDRVRELSE 511

Query: 574 -------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
                   K+ AE  +  KS+FLA +SHE+RTPL AIIGFSE+I+   FGPLG+ RY EY
Sbjct: 512 LARKYSLEKERAEAANRAKSEFLANMSHELRTPLNAIIGFSEMIQAGTFGPLGSDRYEEY 571

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
            N I  SGN +L+++ND+LD+SKIE+G  +L  E + L   ++E + ++ L A EK I +
Sbjct: 572 INDIHTSGNFLLNVINDILDMSKIEAGHFSLDREEIDLCPLINETVRIISLQAEEKNIAV 631

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
            T   + +  + AD R++KQ+ +N+LSNA+ FT  GG+I +    T    + + ++DTGV
Sbjct: 632 ETRIEDAM-ELYADRRAIKQVLINLLSNAVKFTSYGGRITVRARKT-GAALFMTIQDTGV 689

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+    L K  +PF Q+ N       G+GLGL +++++ + + G   I ST   GT++ +
Sbjct: 690 GIPKSALRKIGQPFEQVENQFTKTHTGSGLGLAISRSLAELHGGWLRIRSTERVGTVVSV 749

Query: 807 IFP 809
             P
Sbjct: 750 CIP 752



 Score = 40.8 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 28/249 (11%), Positives = 61/249 (24%), Gaps = 13/249 (5%)

Query: 86  TWNID-AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN--HIGDLLKRQNT 142
            W+ D A G +   S  + + +G  A   + +   DV+ I++ +  +   I +     + 
Sbjct: 256 LWDWDMARGRI-YWSRSMYEMLGYEAQDAV-LPFGDVAAIINEEDGDLYSIAEQAAAGDI 313

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
            +             +V + + A      +    G     I       +         D 
Sbjct: 314 SHVDRVFRMRHADGSWVWMRVRAEIASEGDLHLVG-----IAFDVSEQHRFAQQTAEADM 368

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK--YP 260
           +     E       +      +    S          V +L       +    T    + 
Sbjct: 369 RIREAIENISEAFVLWDANNRLVMANSKFSEY-AGLPVWTLKPGVPRNEVDAHTRPFTFE 427

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
              + E +    + F     +    +      Q+    S      +         D    
Sbjct: 428 RRMANEHNRAGGQTFERQLSDGRWLQVNERRTQDGGMVSIGTDITQLKLHQERLVDSERR 487

Query: 321 LTPETVDKC 329
           L     D  
Sbjct: 488 LMATVHDLS 496


>gi|302038577|ref|YP_003798899.1| putative histidine kinase [Candidatus Nitrospira defluvii]
 gi|300606641|emb|CBK42974.1| putative Histidine kinase [Candidatus Nitrospira defluvii]
          Length = 1058

 Score =  337 bits (863), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 109/576 (18%), Positives = 207/576 (35%), Gaps = 45/576 (7%)

Query: 254  LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
            ++     L  S    +  +     +   +  + Q             E            
Sbjct: 508  VEIHATALFESGGGLVHSRAFVRDVTERRLLEAQIHQYTTRLELAVNE------RTRQLV 561

Query: 314  YFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKS-----------VDDIE 361
               E         D      F V   G +   N        Y             V+ + 
Sbjct: 562  ASQE---RYKALFDLVADSVFMVGEDGVIVAVNKREEQALGYSEQQVVGSSILNVVEPLH 618

Query: 362  IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                   L            + + +  +          L  ++ +    + +        
Sbjct: 619  HDEMRVLLEKIRAGERQVPTQEITVRDATGRETPVEMDLILVRGSDHTWVMVQLRDITDR 678

Query: 422  NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
             +    M     E E        R++E     L ++LE  +D I  ++ E      N  V
Sbjct: 679  KRLERQMHTYQQELE-AKVGERTREIEETKQYLENLLENANDVIYTLDSEQCFTYVNSKV 737

Query: 482  SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
               +GY  ED+L +P+   L +         L   L + ++Q  E   L  + E + + +
Sbjct: 738  LA-WGYAKEDLLGRPYLGLLSKRHRG---RRLKSTLDIGVKQVYEVEVLTKSGEPRSVMV 793

Query: 542  RIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
             +                  D++E K+ + ++ +++K+A           A V+HEI  P
Sbjct: 794  SVSPLHGVEGEILGVLGIARDMTETKKLEQQIRNSEKLA-----SVGKLAAGVAHEINNP 848

Query: 600  LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
            L  I+     + N R G L   R  EY   ++     V  IV  LLD S+  + ++ L  
Sbjct: 849  LGGILN---CLYNMRKGTLSPSRQEEYLASMEDGLRRVQRIVRQLLDFSQQHNPELALA- 904

Query: 660  EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719
                +++ V+  + L        R+ + T+ + +IP ++ D   ++Q+ +N++ NAI   
Sbjct: 905  ---DINQVVNRVLLLTDHLFVPHRVQLETALSPDIPELMIDRHMMEQVLMNLVLNAIQAM 961

Query: 720  PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
             +GG + I T+       ++R++D+G G+++  L +   PF    N     GEGTGLGL 
Sbjct: 962  RTGGVLTIRTSM-DEAHCLVRIQDSGCGISSSVLPRIFDPFFTTKN----EGEGTGLGLS 1016

Query: 780  LAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            ++  +V+ + G+ ++ S   KGT   +  PL    H
Sbjct: 1017 VSLGIVERHGGRIFVESEVGKGTTFTVSIPLATERH 1052



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 27/211 (12%), Positives = 74/211 (35%), Gaps = 9/211 (4%)

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
              + R          R+ + + +++  L       + A+ F +         E ++ R+
Sbjct: 355 ARRIARPIGLLHEGVQRIGSGRLDQQLDLKTGDEIEQLADAFNKMAANLRTSFEQIEQRM 414

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
               +     +   ++E + + I  +N+ G  +  N+      GY +E++L+      + 
Sbjct: 415 E--DVRRLEARYRDLIEHSPEMIYQLNKAGQFVHVNKTGLDKLGYSLEEMLQMRLWDLVP 472

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS----LTM 558
           +   + +  YL  ++S          T+    +   + + I    L  S          +
Sbjct: 473 KGREAEVLAYLERLVSQGRSTI---ETVFVAGDGHPIDVEIHATALFESGGGLVHSRAFV 529

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
            D++E +  + ++       E   + ++  L
Sbjct: 530 RDVTERRLLEAQIHQYTTRLELAVNERTRQL 560



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 49/467 (10%), Positives = 119/467 (25%), Gaps = 65/467 (13%)

Query: 40  KKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTV-----RFTWNIDAHGY 94
           K  +      +  N    N  +         E+    +   R +        + ++  G 
Sbjct: 384 KTGDEIEQLADAFNKMAANLRTSFEQIEQRMEDVRRLEARYRDLIEHSPEMIYQLNKAGQ 443

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEG 154
              +++     +G    +M+ MRL D+             + L  Q     +T    + G
Sbjct: 444 FVHVNKTGLDKLGYSLEEMLQMRLWDLVPKGREAEVLAYLERLVSQGRSTIETVF--VAG 501

Query: 155 TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA------------------L 196
               + +++ A  ++         R F  V          A                   
Sbjct: 502 DGHPIDVEIHATALFESGGGLVHSRAF--VRDVTERRLLEAQIHQYTTRLELAVNERTRQ 559

Query: 197 GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256
                +++  L ++      +  E   I +           ++   +     +  + L  
Sbjct: 560 LVASQERYKALFDLVADSVFMVGEDGVIVAVNKREEQALGYSEQQVVGSSILNVVEPLHH 619

Query: 257 EKYPLL----TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN----- 307
           ++  +L     + E  +P QE        + T  +    L   S  ++  +  R+     
Sbjct: 620 DEMRVLLEKIRAGERQVPTQEITVRDATGRETPVEMDLILVRGSDHTWVMVQLRDITDRK 679

Query: 308 ----------------HPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLL 350
                               +   +E +      ++      +         Y N   L 
Sbjct: 680 RLERQMHTYQQELEAKVGERTREIEETKQYLENLLENANDVIYTLDSEQCFTYVNSKVLA 739

Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
              Y   D +            P L   +        +S             +       
Sbjct: 740 -WGYAKEDLLG----------RPYLGLLSKRHRGRRLKSTLDIGVKQVYEVEVLTKSGEP 788

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
            ++            E +   GI  +  +T+  ++++     +L S+
Sbjct: 789 RSVMVSVSPLHGVEGEILGVLGIARDMTETKKLEQQIRNS-EKLASV 834



 Score = 46.6 bits (109), Expect = 0.016,   Method: Composition-based stats.
 Identities = 22/269 (8%), Positives = 76/269 (28%), Gaps = 24/269 (8%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + +   G +  +++   + +G    +++G  + +V + LH D    + + ++       
Sbjct: 578 VFMVGEDGVIVAVNKREEQALGYSEQQVVGSSILNVVEPLHHDEMRVLLEKIRAGERQVP 637

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
              +   + T    P+++  + +   +  +   +    +                 ++  
Sbjct: 638 TQEITVRDATGRETPVEMDLILVRGSDHTWVMVQ----LRDITDRKRLERQMHTYQQELE 693

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV------SSLTEYYAHKDDVLKTEKY 259
                +       K+  +   + +      + ++       S +  +   K+D+L     
Sbjct: 694 AKVGERTREIEETKQYLENLLENANDVIYTLDSEQCFTYVNSKVLAWGYAKEDLLGRPYL 753

Query: 260 PLLTSEESSLPE------------QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
            LL+                    + +  T +    +       L     E    L    
Sbjct: 754 GLLSKRHRGRRLKSTLDIGVKQVYEVEVLTKSGEPRSVMVSVSPLHGVEGEILGVLGIAR 813

Query: 308 HPSLSAYFDEGENLTPET--VDKCPIPFF 334
             + +   ++    + +   V K      
Sbjct: 814 DMTETKKLEQQIRNSEKLASVGKLAAGVA 842


>gi|220925321|ref|YP_002500623.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium nodulans ORS 2060]
 gi|219949928|gb|ACL60320.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium nodulans ORS 2060]
          Length = 782

 Score =  337 bits (863), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 119/672 (17%), Positives = 248/672 (36%), Gaps = 69/672 (10%)

Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP--PPHLRMKNKVSSLTEYYAHK 250
                 RLD        +      +      I +      PP  R+ + +          
Sbjct: 90  APESELRLDGAVPASALVAGRAVYLIGPDDRIAASLPALLPPGHRLADHLGEAQPLLILG 149

Query: 251 DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR---- 306
           +               ++L              +        ++ ++     +       
Sbjct: 150 ERAGVMTATLGGAPALATLRALPSGRGRVAVVQSLDTATADWRSRARTEAVVIGTATLVI 209

Query: 307 ------------NHPSLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLT 352
                          ++    ++        + +     + +    G + Y + S   L 
Sbjct: 210 VCVGLAYTLQADRARTVDRVCEQVRQRLDTALCRGRCGLWDWDIARGRI-YWSDSMYQLL 268

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
            Y    +    G ++ L+             +    +             I+      + 
Sbjct: 269 GYVREHEFLSFGDVNALVHPDDTDLYGLASQLAAQDATVD------HEFRIRSAAGEWIW 322

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG 472
           +        +Q        GI  +  + R          M+L   +EA S+   + + + 
Sbjct: 323 LKARAEIVRDQDDGGRHLVGIIIDISEQRRLAESTATADMRLRDAVEAVSEAFVLWDAQN 382

Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
            ++  N    +L    +E+   +P   +      + +     EI + DL +   +     
Sbjct: 383 RLVLCNSKFRRLHALTLEEA--QPGRRYDAIMGRAAVPAVRREIPNTDLAELGARTFEAE 440

Query: 533 TKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK------------ 580
             + + L +    ++      Y     DI+  K+ + +L  +++                
Sbjct: 441 LADGRWLQIS---ERRTKDGGYVSVGTDITTLKRHQERLVESERQLIATIADLKRSRRTL 497

Query: 581 -----------------------ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
                                   +  KS+FLA +SHE+RTPL AI+GF+EV++++ FG 
Sbjct: 498 ELQTQQLADLAERYLDQKAQAESANRSKSEFLANMSHELRTPLNAILGFAEVMQDEVFGQ 557

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
           LG+ +Y EY   I  SG+ +L +++D+LD+S+IE+ ++ L  +PV + EA+  A+ L+  
Sbjct: 558 LGSEKYREYCRDIRSSGHYLLSVIDDILDMSRIEARRVTLVKQPVPVAEALERALKLIAE 617

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737
            A  K + +    + +   +LAD R++ QI +N+L NA+ FTP  G++ + T    +  V
Sbjct: 618 PARAKGLTLSVEMSAD-AVVLADERALHQILVNLLQNAVKFTPEAGRVAVRTRRALDA-V 675

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
            + V D+G+G+    L K   PF Q+ ++     +G+GLGL +++++ + + G+  I S 
Sbjct: 676 HIFVEDSGIGIPKAVLPKLGAPFEQVESNFSRSFKGSGLGLAISRSLTELHGGRLRIRSE 735

Query: 798 PAKGTLIEIIFP 809
              GT++ +  P
Sbjct: 736 VGCGTIVLVRLP 747



 Score = 43.9 bits (102), Expect = 0.10,   Method: Composition-based stats.
 Identities = 38/406 (9%), Positives = 96/406 (23%), Gaps = 32/406 (7%)

Query: 86  TWNID-AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNT 142
            W+ D A G +   S+ + + +G        +   DV+ ++H D  +   +   L  Q+ 
Sbjct: 248 LWDWDIARGRI-YWSDSMYQLLGYVREHEF-LSFGDVNALVHPDDTDLYGLASQLAAQDA 305

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
                          ++ +   A  +  ++    G    GI+                D 
Sbjct: 306 TVDHEFRIRSAA-GEWIWLKARAEIVRDQDD--GGRHLVGIIIDISEQRRLAESTATADM 362

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPP--PHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
           +     E       +   +  +    S     H     +      Y A            
Sbjct: 363 RLRDAVEAVSEAFVLWDAQNRLVLCNSKFRRLHALTLEEAQPGRRYDAIMGRAAVPAVRR 422

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
            + + + +      F     +    +      ++    S                +    
Sbjct: 423 EIPNTDLAELGARTFEAELADGRWLQISERRTKDGGYVSVGTDITTLKRHQERLVESERQ 482

Query: 321 LTPETVDK--------CPIPFFVYSHGNLFYANPSFLLLTKYKSVDD----IEIAGGLST 368
           L     D                                 + KS        E+   L+ 
Sbjct: 483 LIATIADLKRSRRTLELQTQQLADLAERYLDQKAQAESANRSKSEFLANMSHELRTPLNA 542

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
           +L   ++  +     +                  I+ +    L++     + +      +
Sbjct: 543 ILGFAEVMQDEVFGQL-------GSEKYREYCRDIRSSGHYLLSVIDDILDMSRIEARRV 595

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQ---LCSILEATSDGIAIINRE 471
                     +      K+  E  +   L   +E ++D + + +  
Sbjct: 596 TLVKQPVPVAEALERALKLIAEPARAKGLTLSVEMSADAVVLADER 641


>gi|251795375|ref|YP_003010106.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Paenibacillus sp. JDR-2]
 gi|247543001|gb|ACT00020.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Paenibacillus sp. JDR-2]
          Length = 606

 Score =  337 bits (863), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 119/565 (21%), Positives = 225/565 (39%), Gaps = 39/565 (6%)

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS----HRNHPS 310
           +          ES   ++      +            L++ S      +       +   
Sbjct: 67  RRLMIEKAKLGESVQGQETFKLRKDGTMLYISLSLTALRDESGTIIGVVGFERDISDRIK 126

Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
           + A   E E+L     D      FV   G + YANP    L  Y + + +++   L+ L+
Sbjct: 127 MEASLFEAESLYSHLADSALAGVFVGQGGRILYANPYLAALYGYTNEELLQVE--LNKLM 184

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
              +L        V L   D+  I     +  ++ +                  P     
Sbjct: 185 LPGELEVVTRDAQVTL--MDQKQIYFHFNITGVKKDGSPVHLEGNSCLISFQGKPAL--- 239

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-PV 489
            G   +    +  +R +         I++   + I +I+  G I+  N+   KL G    
Sbjct: 240 LGTVQDITIKKEKERSLRDSANMYQRIIKFLPEPIVLID-NGEIVYANKLAVKLIGAADD 298

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
            +++ +P   +++      +   L +++  D              + + + + +   ++ 
Sbjct: 299 SEMVGRPILDYVDPAYSDDLMDVLYKVIHTDDPTNF-IENKLLCNDGQTIDVEMSSIRIH 357

Query: 550 FSSC---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
                      + D+++ K+ +  L  ++K++           A V+HEIR PLTA+ GF
Sbjct: 358 NYRGKMVILTVIRDLTDRKRSEEMLVRSEKLSV-----IGQLAAGVAHEIRNPLTALKGF 412

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
           ++++K++  G         Y + +    + +  IVN+ + ++K    K +       LD 
Sbjct: 413 TQLLKSKAEGNSF------YYDIMTNELDRINFIVNEFMTLAKPHFSKFSTRR----LDH 462

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726
            +   IS+++  A    + IRT F N IP I  D   +KQ+ +NI+ NAI   P GGQI 
Sbjct: 463 ILHAVISILETQAILMNVSIRTEFENCIPSIYCDENQLKQVFINIIKNAIEAMPLGGQIT 522

Query: 727 ISTTHT-SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
           IS      +E V L +RD G+G+ +  + +  +PF         + +GTGLGL ++  ++
Sbjct: 523 ISAAMESDHERVRLTIRDEGMGIPDEIIRQIGQPFITT------KEKGTGLGLMISSRII 576

Query: 786 DANMGKFYIFSTPAKGTLIEIIFPL 810
           + + G   I S P +GT IEII PL
Sbjct: 577 EQHQGLMNISSVPGEGTTIEIILPL 601



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 45/386 (11%), Positives = 119/386 (30%), Gaps = 21/386 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG-KT 147
           ID    + +++       G    ++IG   C  + +  ++    + +  K   +  G +T
Sbjct: 27  IDLDENILDVNPGFVALHGWTREELIGRPCC-FTPVHLLEERRLMIEKAKLGESVQGQET 85

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                +GT LY+   L+   +   +    G  GF             A     +  +SHL
Sbjct: 86  FKLRKDGTMLYIS--LSLTALRDESGTIIGVVGFE--RDISDRIKMEASLFEAESLYSHL 141

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS---SLTEYYAHKDDVLKTEKYPLLTS 264
            +       V +    +++           N+      L +     +  + T    +   
Sbjct: 142 ADSALAGVFVGQGGRILYANPYLAALYGYTNEELLQVELNKLMLPGELEVVTRDAQVTLM 201

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN---- 320
           ++  +    +   +  +         +   + +     L      ++    +        
Sbjct: 202 DQKQIYFHFNITGVKKDGSPVHLEGNSCLISFQGKPALLGTVQDITIKKEKERSLRDSAN 261

Query: 321 LTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
           +    +   P P  +  +G + YAN   + L       ++     L      P  SD+  
Sbjct: 262 MYQRIIKFLPEPIVLIDNGEIVYANKLAVKLIGAADDSEMVGRPILD--YVDPAYSDDLM 319

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
                +  +D      +   + +  N   ++ +        N   + +    +  +  D 
Sbjct: 320 DVLYKVIHTDD---PTNFIENKLLCNDGQTIDVEMSSIRIHNYRGKMV-ILTVIRDLTDR 375

Query: 441 RINKRKMEIEVMQLCSILEATSDGIA 466
           + ++  + +   +L S++   + G+A
Sbjct: 376 KRSEEML-VRSEKL-SVIGQLAAGVA 399



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 48/143 (33%), Gaps = 10/143 (6%)

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
           + SI     DGI +I+ +  IL  N     L G+  E+++ +P                +
Sbjct: 13  MESIWNNIPDGIVVIDLDENILDVNPGFVALHGWTREELIGRP--CCFTPVHLLEERRLM 70

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKN 569
            E   L       + T    K+  +L + + +  L   S           DIS+  + + 
Sbjct: 71  IEKAKLG-ESVQGQETFKLRKDGTMLYISLSLTALRDESGTIIGVVGFERDISDRIKMEA 129

Query: 570 KLSHAKKIAEKESSHKSDFLARV 592
            L    +     S      LA V
Sbjct: 130 SLF---EAESLYSHLADSALAGV 149


>gi|85715377|ref|ZP_01046359.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A]
 gi|85697798|gb|EAQ35673.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A]
          Length = 788

 Score =  337 bits (863), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 141/630 (22%), Positives = 250/630 (39%), Gaps = 54/630 (8%)

Query: 228 QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287
           QSP  H      V+ +          ++     LL            +        T   
Sbjct: 156 QSPALHGMSPASVADIVLLDGSGALAVQRAIRSLLGQVTVIQEADAVWRPDTALSITLSA 215

Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH--GNLFYAN 345
             G +      +F + S R         D         +++     + +    G + + +
Sbjct: 216 TTGFVVLILGFAFHWQSTRAREG-DLINDAVRGRIDTALNRGRCGLWDWDLSRGRI-FWS 273

Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405
            S   L   +S  D+   G +S+L+++  +        ++  + D    +   R  +  W
Sbjct: 274 QSMFTLLGLESRSDLLAFGEVSSLVNSEDIDLFEIADELISGKIDHIDQSFRMRHSSGHW 333

Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465
                + +        N         GI  +  + +    K     ++L   +E+  +  
Sbjct: 334 -----IWLRVRCELSQNASG-GAHLIGIAVDVTEQKSLAEKSVEADLRLRDAIESIPEAF 387

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
            + + +  ++  N    +L   P   ++   P+   +E      +              +
Sbjct: 388 VLWDADDRLVLCNSHFQRLHKLPDSAVVVGTPYETVVEVGRMPEIRA---RQPETGTVTS 444

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL------------- 571
                     +   L +    ++      Y     DI+  K+ + KL             
Sbjct: 445 EAHTFDVQLADGNWLHIS---ERRTKDGGYVSVGTDITRIKEHEQKLVENDLRLRATVID 501

Query: 572 ----------------------SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                                 +  K  AE  +  KS FLA +SHE+RTPL AIIGFSE+
Sbjct: 502 LKRTQATLERQALKLADLAQKYADQKNRAEDANRAKSKFLANMSHELRTPLNAIIGFSEI 561

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           + N  FG LG+ +Y EY   I  SG  +L+++ND+LD+SKIE+G+MNL  E   L   + 
Sbjct: 562 MSNGMFGTLGSKKYSEYCRDILTSGQYLLEVINDVLDMSKIEAGRMNLDMEAFDLTGVLD 621

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
           E++ +V    ++K +       + I  I+AD R+VKQI +N+LSNAI FTP GG+I+  +
Sbjct: 622 ESLRVVSGRTSDKSLTFDLRNNDGI-SIVADRRAVKQILVNLLSNAIKFTPDGGRIMARS 680

Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
               N  + L + DTG+G+ ++ L K  KPF Q+ +       G+GLGL +AK++V+ + 
Sbjct: 681 KIFEN-FITLTIADTGIGIASHALRKLGKPFEQVESQLTKTHAGSGLGLAIAKSLVNLHN 739

Query: 790 GKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819
           G   + S P  GT++ +  P +  +    C
Sbjct: 740 GSMKLRSKPGVGTVVRVTLPRHCQARTAIC 769


>gi|332702803|ref|ZP_08422891.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332552952|gb|EGJ49996.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 784

 Score =  337 bits (863), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 124/622 (19%), Positives = 227/622 (36%), Gaps = 33/622 (5%)

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY-YAHKDDVLKTEKY 259
            +  +    +      V +    I             ++   L  +      + + T + 
Sbjct: 18  ARYRTLFRAVSDSLFVVRQRDGRILDVNEAAVAQYGYSREEFLEMHNVDVSVEPVMTTEA 77

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
            L   E   L                 +    L   +              +     + E
Sbjct: 78  TLSVRERIPLRYHRRKDGTAFPVEITAKTV-QLNAETLIVSSTRDISERQRMEDALRDSE 136

Query: 320 NLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
                 +D  P P ++        Y N   +     +  D +  +       D   + + 
Sbjct: 137 QRFHAFMDTIPAPAWITDEQHRYLYINKPTMEQMGGRREDYLGRSAW-----DVFPIEEQ 191

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT-FIPFEKANQFPENMPQNGIEPED 437
                    R+ +              +      +    P   A+         G+  + 
Sbjct: 192 LNSYMEHARRAMQAGHPLREEADYPLTDGSLRRWVRYIFPIHTADGH---RLIGGVAFDI 248

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
            + +  +  +     +L SI E +S GI     +G  L  N A + + GY   +   +  
Sbjct: 249 SERKRTEDALRTSEEKLRSIFENSSLGIFRSTPQGRFLEANPATASILGYSSPEESIREV 308

Query: 498 TVFLEQNT-PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--- 553
                Q          +  +L  + RQ +        K   +L+LRI +  +   +    
Sbjct: 309 KDIGSQVYVNPEQRDAIMRMLLEERRQHVTTEIQVRHKSGSILTLRINMHPVWDENGRPR 368

Query: 554 -YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
                + D++E  + + +L  AK  AE  +  KS+FLA +SHEIRTP+  I+G  EV   
Sbjct: 369 YLEGFVEDMTERVRMERELRAAKSAAEAANLAKSEFLATMSHEIRTPMNGILGMVEVAMR 428

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
           Q   P       +    + +S   +LDI+ D+LD S+IE+GKM    +   L E +   +
Sbjct: 429 QEPSPA----VTQSLRLVRQSARALLDIIGDILDFSRIEAGKMERKEQRFLLRELLRPTL 484

Query: 673 SLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIST-- 729
            L+   A +K + +    A ++P  +L D  S++Q+ +N+L NAI FT  G ++ +    
Sbjct: 485 DLLAQTAVDKGLRLSKHIARDVPEALLGDAASLRQVLVNLLGNAIKFTHEG-EVALDVDL 543

Query: 730 ---THTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
              +   +  V LR  V D+G+G+   +L+   +PFGQ+  +      GTGLGL ++  +
Sbjct: 544 AEPSAKDSGYVRLRFTVSDSGIGIPEDKLQTIFEPFGQLDGA---SYAGTGLGLSISAKL 600

Query: 785 VDANMGKFYIFSTPAKGTLIEI 806
           V    G+  + STP KG+    
Sbjct: 601 VALLGGRLEVRSTPGKGSRFSF 622



 Score = 91.2 bits (225), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 39/401 (9%), Positives = 105/401 (26%), Gaps = 32/401 (7%)

Query: 62  VSNTNYLDSENTFVFDPIPRTVR---FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRL 118
             + + L SE+   +  + R V    F       G + +++E      G    + + M  
Sbjct: 6   PPDVSCLHSESEARYRTLFRAVSDSLFVVRQ-RDGRILDVNEAAVAQYGYSREEFLEMHN 64

Query: 119 CDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGF 178
            DVS    +             +        +         P+++ A  +          
Sbjct: 65  VDVSVEPVMTTE-------ATLSVRERIPLRYHRRKDGTAFPVEITAKTVQLNAETLI-- 115

Query: 179 RGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLR 235
                              +  +++F    +     + +  E++       P       R
Sbjct: 116 --VSSTRDISERQRMEDALRDSEQRFHAFMDTIPAPAWITDEQHRYLYINKPTMEQMGGR 173

Query: 236 MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY-----FG 290
            ++ +          ++ L +       + ++  P +E+      +   ++         
Sbjct: 174 REDYLGRSAWDVFPIEEQLNSYMEHARRAMQAGHPLREEADYPLTDGSLRRWVRYIFPIH 233

Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFL 349
           T   +                       E       +   +  F     G    ANP+  
Sbjct: 234 TADGHRLIGGVAFDISERKRTEDALRTSEEKLRSIFENSSLGIFRSTPQGRFLEANPATA 293

Query: 350 LLTKYKSVDD-IEIAGGL-STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
            +  Y S ++ I     + S +   P+  D      +M    +      +  +  ++   
Sbjct: 294 SILGYSSPEESIREVKDIGSQVYVNPEQRD-----AIMRMLLEERRQHVTTEIQ-VRHKS 347

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
            + L +        ++        G   +  +    +R++ 
Sbjct: 348 GSILTLRINMHPVWDENGRPRYLEGFVEDMTERVRMERELR 388



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 36/316 (11%), Positives = 78/316 (24%), Gaps = 25/316 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLL--KRQN 141
            +     G   E +      +G  + +     + D+   ++++P   + I  +L  +R+ 
Sbjct: 276 IFRSTPQGRFLEANPATASILGYSSPEESIREVKDIGSQVYVNPEQRDAIMRMLLEERRQ 335

Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
               +  +    G+ L + I++   P++  N       GF  V             +   
Sbjct: 336 HVTTEIQVRHKSGSILTLRINMH--PVWDENGRPRYLEGF--VEDMTERVRMERELRAAK 391

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
                 +  K    +    +            +R            A + +        L
Sbjct: 392 SAAEAANLAKSEFLATMSHE------------IRTPMNGILGMVEVAMRQEPSPAVTQSL 439

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
               +S+    +    I      +       +       E L            D+G  L
Sbjct: 440 RLVRQSARALLDIIGDILDFSRIEAGKMER-KEQRFLLRELLRPTLDLLAQTAVDKGLRL 498

Query: 322 TPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
           +       P        G+        + L         E    L   L  P   D+  +
Sbjct: 499 SKHIARDVPEALL----GDAASLRQVLVNLLGNAIKFTHEGEVALDVDLAEPSAKDSGYV 554

Query: 382 KPVMLYRSDRTCIAAS 397
           +           I   
Sbjct: 555 RLRFTVSDSGIGIPED 570



 Score = 55.0 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 32/300 (10%), Positives = 73/300 (24%), Gaps = 23/300 (7%)

Query: 46  HDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKT 105
            ++   S+  D ++         DSE  F            W  D       I++   + 
Sbjct: 111 AETLIVSSTRDISERQRMEDALRDSEQRFHAFMDTIPAP-AWITDEQHRYLYINKPTMEQ 169

Query: 106 IGNYAFKMIGMRLCDVSDILHI--DPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDL 163
           +G      +G    DV  I         H    ++  +    +      +G+ L   +  
Sbjct: 170 MGGRREDYLGRSAWDVFPIEEQLNSYMEHARRAMQAGHPLREEADYPLTDGS-LRRWVRY 228

Query: 164 AALPIYSRNR-EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK---------- 212
              PI++ +     G    G+              +  ++K   + E             
Sbjct: 229 -IFPIHTADGHRLIG----GVAFDISERKRTEDALRTSEEKLRSIFENSSLGIFRSTPQG 283

Query: 213 GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ 272
                      I    SP   +R    + S       + D +      LL      +  +
Sbjct: 284 RFLEANPATASILGYSSPEESIREVKDIGSQVYVNPEQRDAIMRM---LLEERRQHVTTE 340

Query: 273 EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP 332
                 + +  T +     + + +             +     +          +   + 
Sbjct: 341 IQVRHKSGSILTLRINMHPVWDENGRPRYLEGFVEDMTERVRMERELRAAKSAAEAANLA 400


>gi|226357435|ref|YP_002787174.1| histidine kinase [Deinococcus deserti VCD115]
 gi|226319425|gb|ACO47420.1| putative histidine kinase, classic [Deinococcus deserti VCD115]
          Length = 1416

 Score =  337 bits (863), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 105/811 (12%), Positives = 249/811 (30%), Gaps = 98/811 (12%)

Query: 88   NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN--HIGDLLKRQ-NTWY 144
             +   G   +I+      +G    +++G  L DV+      P        L+  + + + 
Sbjct: 619  RVLPDGRWLDINPAGEALLGYTREELLGRTLLDVTHPDDRGPEGTRPFRRLVAGEVDAFS 678

Query: 145  GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
             +      +G  ++  + ++A  +              I++          L +  +++F
Sbjct: 679  QEKRYVRKDGQLVWTKVTVSA--VRDEAGATQYV--VAILNDISEQKKAEDLLRASEERF 734

Query: 205  SHLHEIKKGHSSVEKEKYDIFSQQSPP----PHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
              L        +V      +    +                 +        +    ++  
Sbjct: 735  RQLVGSSPTGIAVGSIDGTLRFPNAAYLEMLGFTLEDFDAGLVNWAALTPPEYRSADENA 794

Query: 261  LLTSEESSLPEQEDFHTIN----------------------------------LNQYTKK 286
               + ES +    +   ++                                    Q T +
Sbjct: 795  FRQAFESGVSRPYEKEMLDRYGRRVPVGLVLTRYEQHDETFVVGYVQDLTLHKAAQRTLR 854

Query: 287  QYFGTLQNNSKESFEYLSHRNHP--------SLSAYFDEGENLTPETVDKC-----PIPF 333
            ++   L+    E    L  +            L+A       LT   VD       P+  
Sbjct: 855  EHGEELERRVAERTHALEEQRAALDAFVRFTELAAAATGLAELTRHAVDVLRATIGPVSV 914

Query: 334  FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393
              Y   ++ +   ++       ++  I     L     A  + D  A             
Sbjct: 915  AYYERHDMLWKAVTWSEDIPEVALAMIRGGVPLDQPSFAQVVQDQQAFYMEEWDAQGEQL 974

Query: 394  IAASAR----LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE----DVDTRINKR 445
                      L+    + +    +    F +    P +              ++ R    
Sbjct: 975  GGFRMYGAGALYPFFIDGQAHGLLNMASFSQRTWTPRDKAIFRAVGRSFALALERREQTA 1034

Query: 446  KMEIEVMQL--------------CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
            ++E +  +L               ++LE+ ++GI   + +G +   N       G   E 
Sbjct: 1035 QLEAQKAELDMRTQALEQDQGFLRTLLESLTEGIVACDAQGHLTVFNDVTRAFHGLGPEP 1094

Query: 492  ILRKPFTVFLEQNTPSVMNHY------LTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
            +    +    +      +         L         +    +        + ++     
Sbjct: 1095 LPPAAWAERFDLYREDGVTPLPTEEIPLFRAFQGQRVRDQGMVIAPKNGPRRWINANGNP 1154

Query: 546  --KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
                        + M D++  +Q + +L       ++ ++    F A  SH++++PL  I
Sbjct: 1155 MYSLTGEKLGAVIAMQDVTARRQAEQELQRVNVELQRSNADLEHFAAVASHDLKSPLRTI 1214

Query: 604  IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
              + E +  +R     + R + Y  +   +   +  +++DLL  +++   +   +   V 
Sbjct: 1215 RSYLE-LIERRLTGQLDERSMRYMGFATEAAARMDTLIDDLLAYARVGRQR---NITRVE 1270

Query: 664  LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
                V E +  +     E+   IR     ++  + AD   ++Q+  N++ NA+ F P G 
Sbjct: 1271 PQRVVQEVLGGLTASIQERGAQIRV---GDLMPVQADESQLRQVFQNLVGNALKFQPEGR 1327

Query: 724  QIIIST-THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
               +          V+ +VRD G+G++    E+    F Q+    +    G+GLGL + +
Sbjct: 1328 VPEVMIDATRDGRYVLFQVRDNGIGISEEYYERVFALFQQLHG--KSEFPGSGLGLAIVR 1385

Query: 783  AMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
             +++ + G+ ++ S   +GT      P  DT
Sbjct: 1386 KIIEEHDGRIWLTSVVGEGTTFHFTLPSSDT 1416



 Score =  144 bits (362), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 42/412 (10%), Positives = 107/412 (25%), Gaps = 16/412 (3%)

Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP----PPHLRMKNKVSSLT 244
            +    A  +  ++++  L +  +           +   Q          R + +     
Sbjct: 465 DNARRYATVRTGEERYRSLVDATRQTVWTNTPDGRLLGDQPGWARLTGQTREEYEGFGWA 524

Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
                 D       +    +  S     +     + +                   E+  
Sbjct: 525 AVLHPDDQERSVAAWHQAVASASPYEINQRVRVADGSYRHFHVRVVPALGQDGSVREWTG 584

Query: 305 ----HRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDD 359
                           + E      V+   +    V   G     NP+   L  Y   + 
Sbjct: 585 VHTDITERVRAEQELRDREERYRVLVEYAAVGVARVLPDGRWLDINPAGEALLGYTREEL 644

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
           +       TLLD     D          R     + A ++           +        
Sbjct: 645 LGR-----TLLDVTHPDDRGPEGTRPFRRLVAGEVDAFSQEKRYVRKDGQLVWTKVTVSA 699

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
             ++         I  +  + +  +  +     +   ++ ++  GIA+ + +G +   N 
Sbjct: 700 VRDEAGATQYVVAILNDISEQKKAEDLLRASEERFRQLVGSSPTGIAVGSIDGTLRFPNA 759

Query: 480 AVSKLFGYPVEDILRK--PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
           A  ++ G+ +ED       +         S   +   +     + +  EK  L       
Sbjct: 760 AYLEMLGFTLEDFDAGLVNWAALTPPEYRSADENAFRQAFESGVSRPYEKEMLDRYGRRV 819

Query: 538 LLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
            + L +   +    +     + D++  K  +  L    +  E+  + ++  L
Sbjct: 820 PVGLVLTRYEQHDETFVVGYVQDLTLHKAAQRTLREHGEELERRVAERTHAL 871



 Score =  132 bits (331), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 50/395 (12%), Positives = 114/395 (28%), Gaps = 19/395 (4%)

Query: 191 NDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK 250
                L + L   F    EI      V +    +     P   +              H+
Sbjct: 356 AQKEELLRSLLNHFPSDPEIYGTSGWVVRTGESVLIPVIPAAMVES-------LPTEVHR 408

Query: 251 DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310
           D +     + L+    +    +     +     ++      L+   + S       ++  
Sbjct: 409 DAMRNLGFHSLILVPMTVRGRRTGVLGVATTHPSRTFVHDDLELARQLSERAALALDNAR 468

Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
             A    GE      VD      +  +  G L    P +  LT     ++ E  G  + L
Sbjct: 469 RYATVRTGEERYRSLVDATRQTVWTNTPDGRLLGDQPGWARLTGQTR-EEYEGFGWAAVL 527

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
               +     A    +   S             ++    +             Q      
Sbjct: 528 HPDDQERSVAAWHQAVASAS-----PYEIN-QRVRVADGSYRHFHVRVVPALGQDGSVRE 581

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
             G+  +  +    ++++     +   ++E  + G+A +  +G  L  N A   L GY  
Sbjct: 582 WTGVHTDITERVRAEQELRDREERYRVLVEYAAVGVARVLPDGRWLDINPAGEALLGYTR 641

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
           E++L +        +            L         +      K+ +L+  ++ +  + 
Sbjct: 642 EELLGRTLLDVTHPDDRGPEGTRPFRRLVAGEVDAFSQEKRYVRKDGQLVWTKVTVSAVR 701

Query: 550 FSSC----YSLTMHDISEWKQEKNKLSHAKKIAEK 580
             +         ++DISE K+ ++ L  +++   +
Sbjct: 702 DEAGATQYVVAILNDISEQKKAEDLLRASEERFRQ 736



 Score =  101 bits (252), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 35/381 (9%), Positives = 90/381 (23%), Gaps = 21/381 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            W     G L        +  G    +  G     V      + +           + Y 
Sbjct: 491 VWTNTPDGRLLGDQPGWARLTGQTREEYEGFGWAAVLHPDDQERSVAAWHQAVASASPYE 550

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
                 +   +      +  +P   ++     + G  +              +  ++++ 
Sbjct: 551 INQRVRVADGSYRHFH-VRVVPALGQDGSVREWTG--VHTDITERVRAEQELRDREERYR 607

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQ---SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP-- 260
            L E      +                       +  +        H DD       P  
Sbjct: 608 VLVEYAAVGVARVLPDGRWLDINPAGEALLGYTREELLGRTLLDVTHPDDRGPEGTRPFR 667

Query: 261 -LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS----LSAYF 315
            L+  E  +  +++ +   +      K     +++ +  +   ++  N  S         
Sbjct: 668 RLVAGEVDAFSQEKRYVRKDGQLVWTKVTVSAVRDEAGATQYVVAILNDISEQKKAEDLL 727

Query: 316 DEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
              E    + V   P    V S  G L + N ++L +  +  ++D +        L  P+
Sbjct: 728 RASEERFRQLVGSSPTGIAVGSIDGTLRFPNAAYLEMLGFT-LEDFDAGLVNWAALTPPE 786

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
               +                    +            +         +  +     G  
Sbjct: 787 YRSADEN-AFRQAFESGVSRPYEKEML-----DRYGRRVPVGLVLTRYEQHDETFVVGYV 840

Query: 435 PEDVDTRINKRKMEIEVMQLC 455
            +    +  +R +     +L 
Sbjct: 841 QDLTLHKAAQRTLREHGEELE 861



 Score = 75.8 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 62/606 (10%), Positives = 145/606 (23%), Gaps = 96/606 (15%)

Query: 70  SENTFVFDPIPRTVRFTWN------IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD 123
               F   P      FT +      +D    +   +  L   IG      +G  L +V  
Sbjct: 2   IGEAFTAPPGLFEAVFTHSSCAMGVLDRSLQIVSGNPALAALIGQPLHAFVGRPLAEVFG 61

Query: 124 ILHIDPNNHIGDLLKRQNTWYGK-------------TTLWPIEGTNLYVP--IDLAALPI 168
            L          +L+  ++                 T  +P+  T   +   I   AL  
Sbjct: 62  PLPAHVLEAYDQVLQGGSSQKELTFPTSQNPHQLLSTIAYPVAETPAGITGLIATFALAH 121

Query: 169 YSRNREFSG--------------FRGFGIVHVNRVDNDPRA-----LGKRLDKKFSHLHE 209
               +                    G  +  V      P          R+  K     E
Sbjct: 122 KDTWQTPEHSCQLAKLGHSLATALTGNDVSRVILEQAGPILGAYGGTLIRVLDKHMLYME 181

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS- 268
              G+ +  ++ +  F  +S  P ++      ++    +            LL    +  
Sbjct: 182 GSFGYGTQVEDTWQPFPTESGYPVVQAVENRDAVFVTVSELPQRFPAIVPLLLPETRAIA 241

Query: 269 -LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
            LP   +    ++   + +       +      E  +        A   + + L  E   
Sbjct: 242 VLPLLSEQGVPSVLSLSFRDEQDIAADRRDFMLELAALCARALERARRYDADLLARERAT 301

Query: 328 KCPIPFFVYSH--------GNL----FYANPSFLLLTKYKSVDDI---------EIAGGL 366
                  + S           +          +  + +      I              L
Sbjct: 302 LLANASSLLSASLDVQETLQRITSLAIEHVADWCAVYQPDDTGRICPVVVAHKDAQKEEL 361

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCI-----------AASARLHTIQWNRENSLAMTF 415
              L     SD                +           +    +H          ++  
Sbjct: 362 LRSLLNHFPSDPEIYGTSGWVVRTGESVLIPVIPAAMVESLPTEVHRDAMRNLGFHSLIL 421

Query: 416 IPFEKANQFPENMPQNGIEPEDV---DTRINKRKMEIE-----------------VMQLC 455
           +P     +    +      P      D     R++                      +  
Sbjct: 422 VPMTVRGRRTGVLGVATTHPSRTFVHDDLELARQLSERAALALDNARRYATVRTGEERYR 481

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           S+++AT   +     +G +L      ++L G   E+     +   L  +          +
Sbjct: 482 SLVDATRQTVWTNTPDGRLLGDQPGWARLTGQTREEYEGFGWAAVLHPDDQERSVAAWHQ 541

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIII--KKLPFSSCYSLTMHDISEWKQEKNKLSH 573
            ++      + +    +    +   +R++    +      ++    DI+E  + + +L  
Sbjct: 542 AVASASPYEINQRVRVADGSYRHFHVRVVPALGQDGSVREWTGVHTDITERVRAEQELRD 601

Query: 574 AKKIAE 579
            ++   
Sbjct: 602 REERYR 607


>gi|237653493|ref|YP_002889807.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T]
 gi|237624740|gb|ACR01430.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T]
          Length = 1407

 Score =  337 bits (863), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 113/677 (16%), Positives = 214/677 (31%), Gaps = 75/677 (11%)

Query: 192  DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD 251
               A+ +  + +     +++                 +      M      +  +     
Sbjct: 343  QAAAVLRESENRLRKALDVQNVGVMFWDVTSGTLIDANDTFLKIMGYSRQEVDAHQLTWQ 402

Query: 252  D-------VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
                         +     +     P ++++   + ++         L  N    +  + 
Sbjct: 403  TFTPPEYIETSIAEMESFRANGRVGPYEKEYLRKDGSRQWFVFAGSALDENRCVEYC-ID 461

Query: 305  HRNHPSLSAYFDEGENLTPETVDKCPIPFF---VYSHGNLFYANPSFLLLTKYKSVDDIE 361
                    +   E E      +    +  +   V S   L   N  +  +  Y     +E
Sbjct: 462  VSGQKRAESALAESEERLRLALQATNLGLYDLNVQSGEALV--NAEYAAMLGYAPETFVE 519

Query: 362  -IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
              A  +  +       D                            + +    ++      
Sbjct: 520  TNAAWIERIHPD----DREITARAYADYVAGRTAQYRVEFRQKTRDGDWKWILSLGKIVA 575

Query: 421  ANQFPENMPQNGIEPEDVDTRINK------------------------RKMEIEVMQLCS 456
             +   + +   G   +  + +  +                        R+ E  + QL  
Sbjct: 576  FDDAGKPLRMLGTHTDITERKRAEASVAQHARELERGRQALLSVLQDQRRAETSLRQLAL 635

Query: 457  ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
             +E + + I I N    I   N A     GY  E ++ +   +     TP      +   
Sbjct: 636  AVEQSPESIVITNLSAEIEYVNAAFLATTGYTREQVIGRNPRILQSGRTPRATYDAIWAA 695

Query: 517  LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLS 572
            L+    QT +   +      +       I  L         Y     DI+E K+   +L 
Sbjct: 696  LT--AEQTWKGELVNRKASGEDYVEFAHIAPLRQPDGRISHYVAVKEDITEKKRLGEELD 753

Query: 573  HAKKIAEKESSH------------------KSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
              +   E   +                   KS FLA +SHEIRTP+ AIIG + +++   
Sbjct: 754  RHRHHLEDLVTQRTAELAQARQQAEAASQAKSAFLANMSHEIRTPMNAIIGLTHLLRKDG 813

Query: 615  FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
              P  + R       I+ SG  +L ++ND+LD+SKIE+GK++L  E   L   +    SL
Sbjct: 814  VTPQQDGR----LEQIEASGRHLLGLINDILDLSKIEAGKLDLALEDFHLSAVLDHVASL 869

Query: 675  VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
            ++  A  K + I          +  D   ++Q   N+  NA+ FT  G  I++      +
Sbjct: 870  IRPSAQSKGLHIELDGDAVPTWLRGDPMRLRQCLFNLAGNAVKFTERGS-IVLRAKLLKD 928

Query: 735  E----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
                 +V   V DTG+G+T  + ++    F Q       +  GTGLGL L + +     G
Sbjct: 929  GAEGLQVRFEVEDTGIGVTPAQGQRLFHVFQQAEVGTTRKYGGTGLGLALTRNLAQMMGG 988

Query: 791  KFYIFSTPAKGTLIEII 807
            +  + S P +G+     
Sbjct: 989  EAGMDSIPGEGSTFWFT 1005



 Score = 78.1 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 40/433 (9%), Positives = 97/433 (22%), Gaps = 35/433 (8%)

Query: 157 LYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSS 216
             VP     L      +     + +      R      AL     ++   + E   G ++
Sbjct: 83  QDVPQAARYLQRPDDAQALESVQAWMSGIQQRHGYRAVALFDAAGERCLAVPETYCGDAA 142

Query: 217 VEKEKYDIFSQQSPPPHLRMKN--KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQED 274
                 +   +      +   +  ++   +        V  + +          +     
Sbjct: 143 NLAHGREHVRRNRLAREVSFSDLHRLPDQSIQMIFAAQVGLSSQAGEPAIGMLLVVIDPR 202

Query: 275 FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF 334
                L Q              +   + L   N     A       L   T    P    
Sbjct: 203 RFLYPLIQRWPTPSASAETILIRREGDELVSLNDLRHRADSALRLRLPIATNPLLPAAMA 262

Query: 335 VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394
           V     +           +   V  +      +      K+ ++    PV          
Sbjct: 263 VQGVQGVVEGVD-----YRGTPVLAVVRRVMNTPWFMVAKVDEDEIHAPVR--------- 308

Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
                          +     +           +     +   V  +     +     +L
Sbjct: 309 -------------RQAWTTGLLSVLLMLLASLGVALLWRQQRLVSAQQAAAVLRESENRL 355

Query: 455 CSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTV--FLEQNTPSVMNH 511
              L+  + G+   +   G ++  N    K+ GY  +++     T   F           
Sbjct: 356 RKALDVQNVGVMFWDVTSGTLIDANDTFLKIMGYSRQEVDAHQLTWQTFTPPEYIETSIA 415

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571
            +    +       EK  L      +     +        +       D+S  K+ ++ L
Sbjct: 416 EMESFRANGRVGPYEKEYLRKDGSRQWF---VFAGSALDENRCVEYCIDVSGQKRAESAL 472

Query: 572 SHAKKIAEKESSH 584
           + +++        
Sbjct: 473 AESEERLRLALQA 485



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/147 (11%), Positives = 41/147 (27%), Gaps = 5/147 (3%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPIE 153
           ++ ++     T G    ++IG     +          + I   L  + TW G+       
Sbjct: 653 IEYVNAAFLATTGYTREQVIGRNPRILQSGRTPRATYDAIWAALTAEQTWKGELVNRKAS 712

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
           G +          P+   +   S +    +               R       L   +  
Sbjct: 713 GEDYVEF--AHIAPLRQPDGRISHY--VAVKEDITEKKRLGEELDRHRHHLEDLVTQRTA 768

Query: 214 HSSVEKEKYDIFSQQSPPPHLRMKNKV 240
             +  +++ +  SQ        M +++
Sbjct: 769 ELAQARQQAEAASQAKSAFLANMSHEI 795



 Score = 45.0 bits (105), Expect = 0.046,   Method: Composition-based stats.
 Identities = 32/403 (7%), Positives = 89/403 (22%), Gaps = 67/403 (16%)

Query: 97  EISEELPKTIGNYAFKMIGMR--LCDVSDILHID-PNNHIGDLLKRQNTWYGKTTLWPIE 153
            ++ E    +G      +       +       +       D +  +   Y         
Sbjct: 501 LVNAEYAAMLGYAPETFVETNAAWIERIHPDDREITARAYADYVAGRTAQYRVEFRQKTR 560

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRAL----GKRLDKKFSHLHE 209
             +    + L  +  +    +    R  G            A      + L++    L  
Sbjct: 561 DGDWKWILSLGKIVAFDDAGKP--LRMLGTHTDITERKRAEASVAQHARELERGRQALLS 618

Query: 210 IKKGHSSVE----------------------KEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247
           + +     E                        + +  +          + +V       
Sbjct: 619 VLQDQRRAETSLRQLALAVEQSPESIVITNLSAEIEYVNAAFLATTGYTREQVIGRNPRI 678

Query: 248 AHKDDVLKTEKYPLLT--SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
                  +     +    + E +   +      +   Y +  +   L+        Y++ 
Sbjct: 679 LQSGRTPRATYDAIWAALTAEQTWKGELVNRKASGEDYVEFAHIAPLRQPDGRISHYVAV 738

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365
           +   +      E  +     ++             +           +         +  
Sbjct: 739 KEDITEKKRLGEELDRHRHHLEDL-----------VTQRTAELAQARQQAEAASQAKSAF 787

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
           L+ +    +   N  I    L R D        RL  I+ +                   
Sbjct: 788 LANMSHEIRTPMNAIIGLTHLLRKDGVTPQQDGRLEQIEASGR----------------- 830

Query: 426 ENMPQNGIEPEDVDTRINKR---KMEIEVMQLCSILEATSDGI 465
                 G+  + +D    +     + +E   L ++L+  +  I
Sbjct: 831 ---HLLGLINDILDLSKIEAGKLDLALEDFHLSAVLDHVASLI 870


>gi|219852263|ref|YP_002466695.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanosphaerula palustris E1-9c]
 gi|219546522|gb|ACL16972.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanosphaerula palustris E1-9c]
          Length = 781

 Score =  337 bits (863), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 115/738 (15%), Positives = 255/738 (34%), Gaps = 63/738 (8%)

Query: 93  GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPI 152
           G +   +             +IG  L D          +   +LL R  T  G+  +   
Sbjct: 75  GMILYANTAFVAMRRQRLSAIIGTSLRDHIAPRD---RSRFDELLTRSLTGPGRGEMLVC 131

Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212
            G     P+ ++  PI        G     +V      +D +    RL  +   L  +  
Sbjct: 132 SGAGS-FPVLVSMTPIM-----VDGSPKLSVV-----ISDRKEDYDRLHLQSRMLDAVAD 180

Query: 213 GHSSVEKEKYDIFSQQSPPPHLRMKNKVS---SLTEYYAHKDDVLKTEKYPLLTSEESSL 269
              + +     I+   S       K   +   SL E    +      ++        ++ 
Sbjct: 181 AVIATDPAGRIIYWNWSATRTYGWKEAEAMGQSLNEAVVRELSQDDADRMAEQLGSGNAW 240

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE----- 324
             +   H  + + +        + +   E    +   +  S     +     +       
Sbjct: 241 SGEFQVHHRDGHLFPIHVNQAPVFDEDGEFVAVIGTSHDISERKAIERALAESEAEARSF 300

Query: 325 ---TVDKCPIPFFVYSHG------NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
               VD C I   VYS         L   N +        + +      G +     P+L
Sbjct: 301 MDNMVDACAICETVYSPDGKPIDIRLVEVNAALAQELGRPAAE----IAGWTAFKIRPEL 356

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
           +     + + ++R+    +        +         +   P               +  
Sbjct: 357 TLPWFDRFLEVHRT-GAAMQFEEPFPVV----GRWYRIAAFPVRGG-------RVAVVFH 404

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
              + +  +  +     +  S++E + D + +   +G IL+ N   S++FG   E++++ 
Sbjct: 405 NITERKQAEEALAESEDRYRSLVEKSIDAVLLSLPDGSILAANAGASQIFGMTEEELIQA 464

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555
                ++++ P     Y     +               K+  L    +        +   
Sbjct: 465 GRASLIDESDPRFTAAYEERARTGR----FSGELTYRRKDGTLFPGEVTSALFTDRNGAI 520

Query: 556 L---TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
           +    + DI++ K+ +  L    +  +  +     F    SH+++ PL +I+ FS+ + +
Sbjct: 521 MSTMIIRDITKRKEIEESLKIYSERLQVSNEELQRFAYIASHDLQAPLRSIVSFSQ-LLD 579

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
           +R+    +    +Y  +I   G  + +++ DLL +S+IE+   +  F P      V++ I
Sbjct: 580 RRYRGKFDKDADDYIRFIVDGGVRMQNLIKDLLLVSRIETQVQS--FAPTDARTVVADTI 637

Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT-PSGGQIIISTTH 731
             ++    E   ++       +P ++AD   ++Q+  N++ NAI +  P    ++  +  
Sbjct: 638 RSLETLILEIGAVVTVD---PLPIVMADPPQLEQVFTNLIGNAIKYRRPEVPVVVWVSAV 694

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
                    VRD G+G+     ++  + F ++    +   EGTG+GL + + +V  + GK
Sbjct: 695 RQGGWWEFAVRDNGIGIEPEYFDQIFEMFSRL--QTKDEYEGTGIGLAIVRKIVARHGGK 752

Query: 792 FYIFSTPAKGTLIEIIFP 809
            ++ STP KG++     P
Sbjct: 753 IWVESTPGKGSIFHFTLP 770



 Score =  101 bits (252), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 41/378 (10%), Positives = 100/378 (26%), Gaps = 26/378 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCD-VSDILHIDPNNHIGDLLKRQNTWYGKT 147
            D  G +   +    +T G    + +G  L + V   L  D  + + + L   N W G+ 
Sbjct: 185 TDPAGRIIYWNWSATRTYGWKEAEAMGQSLNEAVVRELSQDDADRMAEQLGSGNAWSGEF 244

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH- 206
            +   +G     PI +   P++  + EF      G  H               + +    
Sbjct: 245 QVHHRDGHLF--PIHVNQAPVFDEDGEFVAV--IGTSHDISERKAIERALAESEAEARSF 300

Query: 207 ---LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK-----DDVLKTEK 258
              + +      +V          +    +  +  ++       A          L    
Sbjct: 301 MDNMVDACAICETVYSPDGKPIDIRLVEVNAALAQELGRPAAEIAGWTAFKIRPELTLPW 360

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
           +        +    +      +     +     ++   + +  + +            E 
Sbjct: 361 FDRFLEVHRTGAAMQFEEPFPVVGRWYRIAAFPVRG-GRVAVVFHNITERKQAEEALAES 419

Query: 319 ENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
           E+     V+K      +    G++  AN     +      + I+   G ++L+D      
Sbjct: 420 EDRYRSLVEKSIDAVLLSLPDGSILAANAGASQIFGMTEEELIQ--AGRASLIDESDPRF 477

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
             A +           +       T +                 ++    M    I  + 
Sbjct: 478 TAAYEERARTGRFSGEL-------TYRRKDGTLFPGEVTSALFTDRNGAIMSTM-IIRDI 529

Query: 438 VDTRINKRKMEIEVMQLC 455
              +  +  ++I   +L 
Sbjct: 530 TKRKEIEESLKIYSERLQ 547



 Score = 46.6 bits (109), Expect = 0.020,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 51/157 (32%), Gaps = 8/157 (5%)

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
            +        + R     +E        ++E   +G   +   G+IL  N A   +    
Sbjct: 32  GEVDAIVVSKEGRKEIYTLEGADHLYRVLVEKIQEGALTLTVTGMILYANTAFVAMRRQR 91

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL-LSLRIIIKK 547
           +  I+       +     S  +  LT  L+   R       L  +      + + +    
Sbjct: 92  LSAIIGTSLRDHIAPRDRSRFDELLTRSLTGPGRG----EMLVCSGAGSFPVLVSMTPIM 147

Query: 548 LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
           +  S   S+    IS+ K++ ++L    ++ +  +  
Sbjct: 148 VDGSPKLSVV---ISDRKEDYDRLHLQSRMLDAVADA 181


>gi|182412731|ref|YP_001817797.1| PAS/PAC sensor hybrid histidine kinase [Opitutus terrae PB90-1]
 gi|177839945|gb|ACB74197.1| PAS/PAC sensor hybrid histidine kinase [Opitutus terrae PB90-1]
          Length = 876

 Score =  337 bits (863), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 117/616 (18%), Positives = 214/616 (34%), Gaps = 60/616 (9%)

Query: 237 KNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS 296
              + +    Y      L  E    +     +    E           +   + ++++  
Sbjct: 20  AAGIGAGYWRYLRARAELLAELTARVQGCAVAFHVAELQELTGAPAERESPVYASVKDRL 79

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKS 356
                    +   SL  Y      L P   D  P             A P+    T    
Sbjct: 80  GRLRTSDERQPRISLLRYLPANGTLLP-LADSAP---------RTDPAQPAPRTGTLPAR 129

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR--LHTIQWNRENSLAMT 414
           +         +    A      +  + V  Y           +  +       E   A+ 
Sbjct: 130 LSPGLEGVIETGYPTAEGPRQEDGGRWVSGYALIGPHTPGRPQHLIAFDLTAHEWYRALW 189

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG---IAIINRE 471
                 A      +            ++ + +       L ++ EA   G   I I++  
Sbjct: 190 NTALGTAGYVWMLLLLPLAALVTTHRQLMQGEA------LRNLTEAMEQGHSPIMIVDLG 243

Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
             I   N    +L GY   ++L + +  F        +   +   +      T     + 
Sbjct: 244 LRIEYANAKFCRLLGYSRRELLGREWRTFHGAEARPEIFADMVTTIRAGHPWTG--EWMM 301

Query: 532 STKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
             K+  +  LR  I  +   +     +     D++E +Q +  L  AK+ AE     K  
Sbjct: 302 PRKDGTVFPLRAAITPVKNRAGEIRSFVGVFEDMTEIRQTEALLREAKERAEAGDRAKGQ 361

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           FLA +SHE+RTPL  I+GF+ ++      P      +EY   I  S   ++ +  D+LD 
Sbjct: 362 FLATMSHEVRTPLNGIVGFASLLLETELTP----EQLEYVETIRTSSETLIQLTGDILDY 417

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQ 706
           ++IESG++ L  +P    E V  A+ L    A  K + +     + +P  I+AD+  ++Q
Sbjct: 418 ARIESGRLKLEPQPCDPRECVENALDLAATLALPKGVELLHWIDDTVPAAIVADVGRLRQ 477

Query: 707 IALNILSNAIHFTPSGGQIIISTTH-------------------------TSNEEVILRV 741
           + +N+++NA+ FTP+G ++ +                              ++  +   V
Sbjct: 478 VIVNLVNNAVKFTPTG-EVAVDVRVVASSPAPETADAEALPSARETADAGEASCTLEFSV 536

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
           RDTG+G+      K  +PF Q+ +S   R  GTGLGL + K +V    G     S   +G
Sbjct: 537 RDTGIGIAPAHHPKIFRPFSQVDDSTTRRYGGTGLGLAICKNLVGLMNGHITFTSELGRG 596

Query: 802 T--LIEIIFPLYDTSH 815
           +     I  P++  + 
Sbjct: 597 SRFTFTIRVPVHTPAA 612



 Score = 65.0 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 34/258 (13%), Positives = 73/258 (28%), Gaps = 21/258 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTWYGK 146
           +D    ++  + +  + +G    +++G             P     +   ++  + W G+
Sbjct: 240 VDLGLRIEYANAKFCRLLGYSRRELLGREWRTF-HGAEARPEIFADMVTTIRAGHPWTGE 298

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
             +   +GT    P+  A  P+ +R  E   F   G+           AL +   ++   
Sbjct: 299 WMMPRKDGT--VFPLRAAITPVKNRAGEIRSF--VGVFEDMTEIRQTEALLREAKERAEA 354

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
               K    +    +          P   +    S L E     + +   E     +   
Sbjct: 355 GDRAKGQFLATMSHEVR-------TPLNGIVGFASLLLETELTPEQLEYVETIRTSSETL 407

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
             L          L+    +     L+    +  E + +    + +    +G  L     
Sbjct: 408 IQLTGDI------LDYARIESGRLKLEPQPCDPRECVENALDLAATLALPKGVELLHWID 461

Query: 327 DKCPIPFFVYSHGNLFYA 344
           D  P    V   G L   
Sbjct: 462 DTVPAAI-VADVGRLRQV 478


>gi|153836639|ref|ZP_01989306.1| putative sensory box sensor histidine kinase/response regulator
           [Vibrio parahaemolyticus AQ3810]
 gi|149749988|gb|EDM60733.1| putative sensory box sensor histidine kinase/response regulator
           [Vibrio parahaemolyticus AQ3810]
          Length = 873

 Score =  337 bits (863), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 99/376 (26%), Positives = 171/376 (45%), Gaps = 12/376 (3%)

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
           +  ++ QL  + E   D I I + +G I   N A  +L  Y +E+++ K     L+    
Sbjct: 234 LSAKISQLAEVAEHARDTIIITHPDGAIAWVNSAFEQLTEYSLEEVVGKSPGELLQGEDT 293

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDIS 562
                 L    S+     +    L  TK ++   + + +  +   +     +     DI+
Sbjct: 294 DANTVALLS-QSVRSHSPVRVEILNYTKSQRPYWVELELSPVFDENGELLRFIAVERDIT 352

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           + ++ + +LS A   ++K +  KS+FLA +SHEIRTP+ AI+G SE++            
Sbjct: 353 DRREMEKRLSSALDKSKKATQAKSEFLANMSHEIRTPMNAIMGISEILLENENRREP--- 409

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             E    + +S N ++ I+ND+LD SK+E+GK+ L  E   L   V    +L    A++K
Sbjct: 410 -RELLLLLHKSANNLVTIINDILDYSKVEAGKLTLVEEEFDLRSLVESCTALCAYQADKK 468

Query: 683 RILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
            + +       +  ++  D   + QI LN++ NA+ FT  G  +++    +        V
Sbjct: 469 NLKLLVDMPLAMNTVVVGDKGRINQILLNLIGNAVKFTDEG-HVLLKVRESELGF-DFSV 526

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            DTG+G+    L   M  F Q+  S   R EGTGLGL ++K ++    G+  + S    G
Sbjct: 527 TDTGIGIPEDRLTHIMDKFEQVDTSATRRHEGTGLGLAISKRLISMYNGELCVRSDFGNG 586

Query: 802 TLIEIIFPLYDTSHPH 817
           +       L   S PH
Sbjct: 587 SCFSFSLQLPKRSQPH 602



 Score = 58.1 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 12/140 (8%), Positives = 38/140 (27%), Gaps = 6/140 (4%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTWYGKTT 148
             G +  ++    +       +++G    ++      D N    +   ++  +    +  
Sbjct: 257 PDGAIAWVNSAFEQLTEYSLEEVVGKSPGELLQGEDTDANTVALLSQSVRSHSPVRVEIL 316

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
            +       +V ++L+  P++  N E    R   +        +          K     
Sbjct: 317 NYTKSQRPYWVELELS--PVFDENGEL--LRFIAVERDITDRREMEKRLSSALDKSKKAT 372

Query: 209 EIKKGHSSVEKEKYDIFSQQ 228
           + K    +    +       
Sbjct: 373 QAKSEFLANMSHEIRTPMNA 392



 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/134 (14%), Positives = 48/134 (35%), Gaps = 7/134 (5%)

Query: 321 LTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
              E  +       + +  G + + N +F  LT+Y   + +  + G   LL      D +
Sbjct: 240 QLAEVAEHARDTIIITHPDGAIAWVNSAFEQLTEYSLEEVVGKSPG--ELLQG---EDTD 294

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
           A    +L +S R+       +     ++     +        ++  E +    +E +  D
Sbjct: 295 ANTVALLSQSVRSHSPVRVEILNYTKSQRPY-WVELELSPVFDENGELLRFIAVERDITD 353

Query: 440 TRINKRKMEIEVMQ 453
            R  ++++   + +
Sbjct: 354 RREMEKRLSSALDK 367


>gi|117924952|ref|YP_865569.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117608708|gb|ABK44163.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 837

 Score =  337 bits (863), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 98/534 (18%), Positives = 207/534 (38%), Gaps = 28/534 (5%)

Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVD 358
                  +  + +             ++       +      + + N +     +     
Sbjct: 12  TAQSQPADLDTPATEASLYAQCYQNLLNVGQQGLCLLGRDRLIVHTNKTMADWLRVSPEA 71

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
             +        L+  +  +   I              ++  L+ +     N  ++  +  
Sbjct: 72  LYQTPFSQWVDLNDREKLEAFFIDV-------DQDGPSAITLNLVPDLGRNGRSVRVMGA 124

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
             ++          +  +  D R   +++  E+    +I   T D  +  + +G +   N
Sbjct: 125 GLSDVGGVAGMGLALV-DLSDQRAMLQQLNHELTTYRNIANFTHDWESWFDAQGRVQWIN 183

Query: 479 RAVSKLFGYP--VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
            AV ++ GY       +             S +   + E  +  +   +         + 
Sbjct: 184 PAVQRVTGYSIAACMEMATYPVDLFHAQDRSTLERLMQEGRAGAVAHDVSLRIKHREGDL 243

Query: 537 KLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
           + +SL +            +  ++ DISE ++ +  L  AK+ AE  S  KS FL+ +SH
Sbjct: 244 RWVSLSLQPMLTNAGEKLGFRTSIRDISERREAEQALEAAKRSAETASKAKSRFLSTMSH 303

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           EIRTP+TAI+G +E++       +      E+ + I RSG+ +L++++D+L IS+ E  +
Sbjct: 304 EIRTPMTAILGVAELMSGTHLDRV----QREHVSIIRRSGDALLELIDDILVISQNEGAQ 359

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILS 713
                    +D  +   + +    A EK I + +  A  +P R++ D   ++Q+ +N++ 
Sbjct: 360 EGEKQVVFDVDHLLESVMDMASYRATEKGIKLLSHVAALVPVRVMGDPVRLRQVLINLVG 419

Query: 714 NAIHFTPSGGQIIISTTHTSNE-----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
           NAI F+  G +++I             +    V D G+G+   + E     F Q+  ++ 
Sbjct: 420 NAIKFSEKG-EVVIQVRPGPRNGPERSDYRFSVSDNGIGIPMEKREAIFDAFSQVDETES 478

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFY-IFSTPAKGTLIEIIFPLY---DTSHPHD 818
            R  GTGLGL + + +V+   G+   +FS P  G+      PL    + ++P +
Sbjct: 479 RRFGGTGLGLTICRRLVNLMGGQLELLFSEPGVGSTFAFDIPLQPAMEQANPAN 532



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/138 (11%), Positives = 38/138 (27%), Gaps = 5/138 (3%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMR--LCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
           DA G ++ I+  + +  G      + M     D+           +    +     +  +
Sbjct: 174 DAQGRVQWINPAVQRVTGYSIAACMEMATYPVDLFHAQDRSTLERLMQEGRAGAVAHDVS 233

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                   +L   + L+  P+ +   E  GFR    +       +     +   +     
Sbjct: 234 LRIKHREGDLR-WVSLSLQPMLTNAGEKLGFR--TSIRDISERREAEQALEAAKRSAETA 290

Query: 208 HEIKKGHSSVEKEKYDIF 225
            + K    S    +    
Sbjct: 291 SKAKSRFLSTMSHEIRTP 308


>gi|312879124|ref|ZP_07738924.1| multi-sensor signal transduction histidine kinase [Aminomonas
           paucivorans DSM 12260]
 gi|310782415|gb|EFQ22813.1| multi-sensor signal transduction histidine kinase [Aminomonas
           paucivorans DSM 12260]
          Length = 877

 Score =  337 bits (863), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 124/702 (17%), Positives = 245/702 (34%), Gaps = 49/702 (6%)

Query: 123 DILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAAL---PIYSRNREFSGFR 179
              + D       +L+ + +  G+   +P E   L     + ++   P++    +F GF 
Sbjct: 89  HPYNPDFQRW-ERVLRSRASIRGEVRTFPEEERELLESQGIRSILVVPVFLEE-QFWGFA 146

Query: 180 GFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK 239
           GF      R  ++       L         ++         +      +     L+ + +
Sbjct: 147 GFDDCRRERRFDEDEESVLSLAAAGIGAALVRSRM-----HRRMEEEVRERTRDLQRQGE 201

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
           V           +     +   L S         DF ++   +  ++      ++     
Sbjct: 202 VLRQEVAERQAGERRLRLQNRFLESLH---QISLDFLSLQDPREVERAILERARDLFGAR 258

Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDD 359
             YL      S  A         P   +  P   +            +   L        
Sbjct: 259 RAYLVSAETKSPGAPSPRYLRDVPPG-ETDPRHPWGGDL--------ASETLRGGIPRLR 309

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
           +   GG    L  P L   +A   ++L   D    +A              L        
Sbjct: 310 VRENGGTC--LGLPLLWGEDAAGALLLDLQDPGTPSAD-----------RLLLAHAFTDL 356

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
            A  +        +  +  + R  +  +E    +   +++    GI  +   G ++ +N 
Sbjct: 357 AALSWRNASLHEALLKQLEEGRRTRAVLEESRERYRRLVDHAPLGIVRLEGGGRVVDSNA 416

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
            + +LF    E +  +             +   + +       + L       T  + L 
Sbjct: 417 KLLELFDTTGERLADRDIFSR-PGRLLPEVLEAVRQCQQTRRPRVLSFAFPKGTGCKHLK 475

Query: 540 SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES-------SHKSDFLARV 592
           +  + +            + D+++  + +  L    +     S         K +FLA +
Sbjct: 476 AHLVPLGPEE----LLGVVEDVTDLVEAEKALWKRTEELSAASADLTRTARMKDEFLAHM 531

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHE+RTPL A++  +E +  +  G L N         I+  G   L ++ D+LD+SK+E+
Sbjct: 532 SHELRTPLGAMLNLAEALAEESLGTL-NEAQRRILQSIEECGRHFLSLIGDILDLSKVEA 590

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712
           G+++L   P+ +      A++ +     +K I +      ++PR   D + V+QI +N+L
Sbjct: 591 GRLDLVRSPLDVASLARGALTALSRDFEKKGIAVSLEAPEDLPRADGDPKRVRQILVNLL 650

Query: 713 SNAIHFTPSGGQIIISTTHTS-NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           SNA+ FTP GG++ +          V + V D G+G++  +L++   PF Q         
Sbjct: 651 SNAVKFTPQGGRVGVEVLRDPLRPAVAVTVWDRGIGISPEDLDRLFVPFVQGEGGLSRSF 710

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
            GTGLGL L   MV+ + G   + S P +G+   +  PL + 
Sbjct: 711 SGTGLGLSLVLRMVELHGGGLQVESAPGEGSRFTVRLPLAEE 752


>gi|227889096|ref|ZP_04006901.1| histidine kinase [Lactobacillus johnsonii ATCC 33200]
 gi|227850325|gb|EEJ60411.1| histidine kinase [Lactobacillus johnsonii ATCC 33200]
          Length = 621

 Score =  337 bits (863), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 89/422 (21%), Positives = 181/422 (42%), Gaps = 37/422 (8%)

Query: 397 SARLHTIQWN-RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
             R   ++    + S  +     ++  Q  E      +  E           + E  +L 
Sbjct: 214 EMRKQALRVANGDYSGHVRVYAQDELGQLAEAFNTLSVRIERTQEIS-----DSERRRLD 268

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           ++L   +DG+   +R G I   N       G   +D++ KP T  L     +     + +
Sbjct: 269 NVLTHMTDGVIATDRHGNITIINETALDFLGKTEKDVIGKPITNLLGLKDVT-----IQD 323

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575
           +LS      +        +     +  +I +   F S     +HDI++ ++ + +     
Sbjct: 324 LLSTQQELVVRVNDNTRDEMILHANFSLIQRVTGFVSGLVCVLHDITQQQKNEREQQ--- 380

Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI-EYANYIDRSG 634
                       F++ VSHE+RTPLT++  + E + +   G   +P    ++ + I    
Sbjct: 381 -----------QFVSNVSHELRTPLTSLRAYVEALND---GAWKDPNIAPKFLHVIQDET 426

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN-------EKRILIR 687
             ++ ++NDLL +S+++ G   +  E V+L++ V+  ++   +          +K+  I+
Sbjct: 427 ERMIRMINDLLSLSRMDRGVAKMDLEWVNLNDFVNHVLNRFDMMLKSDTDKMHKKKYSIK 486

Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747
             F +    +  D   + Q+  NI++NAI ++P GG I +     + + VIL + D G+G
Sbjct: 487 REFPHQALWVEIDTDKMMQVIDNIMNNAIKYSPDGGVITVRL-LQAQKHVILSISDQGLG 545

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           +   +L K    F ++  ++  +  GTGLGL ++K +V+A+ G+ +  S    G+   I 
Sbjct: 546 IPRKDLNKIFDRFYRVDKARSRKQGGTGLGLAISKEIVEAHHGRIWADSAEGSGSTFYIS 605

Query: 808 FP 809
            P
Sbjct: 606 LP 607


>gi|218438944|ref|YP_002377273.1| integral membrane sensor signal transduction histidine kinase
           [Cyanothece sp. PCC 7424]
 gi|218171672|gb|ACK70405.1| integral membrane sensor signal transduction histidine kinase
           [Cyanothece sp. PCC 7424]
          Length = 633

 Score =  337 bits (863), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 101/444 (22%), Positives = 189/444 (42%), Gaps = 28/444 (6%)

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
           +    ++       A       +   ++ +T     +      N   + +       +  
Sbjct: 190 LSRSITEPLQQMTRATKQLAAGDLSQTITITSNDELEVLAESFNSMTSRLRELIARIQDR 249

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILST------NRAVSKLFGYPVEDILRKPF 497
             ++     +  ++L+A  D I + N+EGI+L        N         P + I+ K  
Sbjct: 250 AEQLHQSESKNRALLDAIPDLILVFNQEGILLDCKCQTNENTP----LSLPFKSIIGKKI 305

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT 557
                 ++  ++  ++ E L+    Q  E                     +         
Sbjct: 306 DEVFAHDSAELLFFHIKEALTCKTLQVCEYEQFI----GDEKLYYETRIVVSGEGEVLAI 361

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
           + DI++ K  + +   AK+ AE  +  K+ FLA +SHE+RTPL  I+G S+++       
Sbjct: 362 IRDITKNKLAQAEWQQAKEAAEAANQAKTAFLASMSHELRTPLNGILGLSQLLLEDAQEA 421

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
                +IE    I++SG  +L ++ D+LDISKIE+GKM L+ E   +   ++E ++ +Q 
Sbjct: 422 GYLD-FIEDLQQINQSGLHLLGLIEDILDISKIEAGKMILYPETFDVSLLITEVVNTIQP 480

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT----- 732
              +    ++  F+N +  ++AD + VKQI +N+LSNA  FT  G +I+++         
Sbjct: 481 LIKKNGNSLQIKFSNPLGPMVADRKRVKQILINLLSNAAKFTEQG-KILLTVNRQVFNET 539

Query: 733 -------SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
                   +  ++  V DTG+GMT  ++ K  +PF Q  +S   +  GTGLGL + +   
Sbjct: 540 PQPSINSPSTWLVFSVIDTGIGMTQEQISKIFQPFVQADSSTTKKYGGTGLGLSICQRFC 599

Query: 786 DANMGKFYIFSTPAKGTLIEIIFP 809
           +   G   + S    G+   +  P
Sbjct: 600 EMMGGYITVESQVNVGSAFTVGLP 623


>gi|288553692|ref|YP_003425627.1| two-component sensor histidine kinase [Bacillus pseudofirmus OF4]
 gi|288544852|gb|ADC48735.1| two-component sensor histidine kinase involved in phosphate
           regulation [Bacillus pseudofirmus OF4]
          Length = 593

 Score =  337 bits (863), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 113/564 (20%), Positives = 233/564 (41%), Gaps = 31/564 (5%)

Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
             +    T +     + +           ++            L  ++ +  +  +H + 
Sbjct: 46  EAELAAFTIESHSEEAIDEQQLALRMSERLDARVTIIAADGTVLGESATDPEDMDNHADR 105

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
           P +    +          D        Y+      A  S  +     +    ++   + T
Sbjct: 106 PEIREVREGKNGTEMRYSDTIGQELLYYAVPYQVDAEQSGYVRLGLATQTIAKLNETIWT 165

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAAS-ARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
           +L          I  +    ++        A    I+    N  A TF    K ++  + 
Sbjct: 166 ILIVSFTVAFIVIGAITYRIANEMIRPIENASEVAIELAEGNFKARTF--EGKQDEVGQL 223

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
                +   +++    + + + E  +L +++     G+  IN  G I   N+   ++F  
Sbjct: 224 TRSMNVLAYNLEQITKRHEAQQE--RLETLINNMGSGLIFINTRGDISLINQKCHEIF-- 279

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK- 546
             E+   K       +   S     + + + +  ++  E+I L +  + K   ++     
Sbjct: 280 --EENTDKWLNQLYHEVFKSKELIKIVQTIFITEKRHREQIQLVTGIDTKHFDIQAAPIL 337

Query: 547 -KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
            ++       L +HDI+E K+ +                + DF+A VSHE++TP+T+I G
Sbjct: 338 SEMGMVKGIVLVLHDITELKKLEQV--------------RKDFVANVSHELKTPVTSIKG 383

Query: 606 FSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           FSE + +   G + +P Y+E +   I +    +  ++ DLL++SK+E     L++    L
Sbjct: 384 FSETLLD---GAMADPAYMEKFLTIIHKESERLQSLIQDLLELSKLEQHYFRLNWGRAEL 440

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724
            + V +A+ L++  A  K I +    A+++  +  D   +KQ+A+N++SNAI +TP+ G+
Sbjct: 441 TKIVQDAVELLRPKAEAKEIALSLHAASSV-EMDGDSERLKQVAINLISNAITYTPNHGE 499

Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
           I +S T   ++ ++  V D G+G+ + EL +  + F ++  ++     GTGLGL + K +
Sbjct: 500 INVSVT-QDHQSILFTVSDNGIGIESSELPRIFERFYRVDRARSRNSGGTGLGLAIVKHL 558

Query: 785 VDANMGKFYIFSTPAKGTLIEIIF 808
           V+A+ GK  + S    GT   I F
Sbjct: 559 VEAHNGKLSVESELGHGTTFTIHF 582


>gi|27378182|ref|NP_769711.1| two-component sensor histidine kinase [Bradyrhizobium japonicum
           USDA 110]
 gi|27351329|dbj|BAC48336.1| two-component sensor histidine kinase [Bradyrhizobium japonicum
           USDA 110]
          Length = 634

 Score =  337 bits (863), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 114/391 (29%), Positives = 187/391 (47%), Gaps = 18/391 (4%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           R     +  E  +   +    SD I+   R G +   + A   + G PV  +        
Sbjct: 200 RTGVALLSREEERYRLLARNMSDVISRHRRNGAVQFISPAAEAMLGMPVAQLHGHGLFDR 259

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK----LLSLRIIIKKLPFSSC--- 553
           +           L++    ++R    ++    T  E+     + + +  + L        
Sbjct: 260 VHVADRPAYLTALSDAARGNVRSVEFRLRREPTGSERGQVDFIWVEMRCRPLDQDLGRQD 319

Query: 554 ----------YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
                         M D+++ K  +  L  A+  AE   + K+ FLA +SHE+RTPL AI
Sbjct: 320 IDRDVARETEVVAVMRDVTDRKLSEQALDQARSAAEAADAAKTRFLATMSHELRTPLNAI 379

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           IGFS++I  ++   LG  +  EYA  I+ SG  +L +VN +LD+SK+ESG   +  EP +
Sbjct: 380 IGFSDMIAQEQALMLGAAQRKEYAQVINDSGQHLLSVVNGILDMSKMESGNFEIASEPFA 439

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
              ++    +L+ L A E  I + T    ++P +  D R+ KQI LN+++NAI FT  GG
Sbjct: 440 PRASLMHCCNLLALKARENGIDLITDAPQDLPVMTGDPRAFKQIVLNLVANAIKFTERGG 499

Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
           Q+ +S   +    + LR+ DTGVG+   +L++   PF Q   + Q R EGTGLGL + K+
Sbjct: 500 QVSVSAAVS-GSHLTLRISDTGVGIAPDDLKRIGAPFFQAGKTYQRRHEGTGLGLSIVKS 558

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           +V  ++G   + S   +GT + +  PL  TS
Sbjct: 559 LVALHLGDLTVQSRLGEGTAVTVKLPLVYTS 589



 Score = 38.5 bits (88), Expect = 4.5,   Method: Composition-based stats.
 Identities = 15/173 (8%), Positives = 42/173 (24%), Gaps = 12/173 (6%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150
            +G ++ IS      +G    ++ G  L D   +              R N    +  L 
Sbjct: 229 RNGAVQFISPAAEAMLGMPVAQLHGHGLFDRVHVADRPAYLTALSDAARGNVRSVEFRLR 288

Query: 151 P-----IEGTNLYVPIDLAALPI------YSRNREFS-GFRGFGIVHVNRVDNDPRALGK 198
                   G   ++ +++   P+         +R+ +       ++              
Sbjct: 289 REPTGSERGQVDFIWVEMRCRPLDQDLGRQDIDRDVARETEVVAVMRDVTDRKLSEQALD 348

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD 251
           +           K    +    +              +  + + +      K+
Sbjct: 349 QARSAAEAADAAKTRFLATMSHELRTPLNAIIGFSDMIAQEQALMLGAAQRKE 401


>gi|288958191|ref|YP_003448532.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
 gi|288910499|dbj|BAI71988.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
          Length = 1138

 Score =  337 bits (863), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 109/657 (16%), Positives = 222/657 (33%), Gaps = 51/657 (7%)

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
            +  +   ++    +   +    +          R+           +H  ++       
Sbjct: 28  AEGGASTPDLTAILTDRLRRSPHLRGLTLLDRTGRIVATTEGTIPAGSHLTELDVFRMQA 87

Query: 261 LLTSEE----SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
                        P +        N+ +  ++   +    ++S   L      +++  + 
Sbjct: 88  AAQGNGLVIGDPRPGRSLIDRPAGNERSVGRWLLPMSRALRDSDGTLEAVVVATVNPDYF 147

Query: 317 EGENLTPETVDKCPIP--FFVYSHGNLFYANP-----------SFLLLTKYKSVDDIEIA 363
           +G     +  +   +     +Y +                   +   L K          
Sbjct: 148 QGLYRAVQGGEAAGVGDRIALYRYDGTLLTVQPQAGEEIGRSFATTPLFKTHLPQAEYGV 207

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
              S                          ++         W+       T         
Sbjct: 208 FRHSGTDIGAGPDTRIVAYRTTPVWPLVLTVSVRRDTVLALWHGN---LWTATLLSGGMI 264

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
              ++    +       R   +++E    +L +I++  ++GI     +G+I + N A   
Sbjct: 265 LLLSLFGLLLARSLATQREQGKELEATNARLSAIVDTAAEGIITTRPDGVIEAANPAAHA 324

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL-------------RQTLEKITL 530
           +F +   +++ +     L  +        L EI                  R  ++    
Sbjct: 325 IFRHAPGELVGRSVVELLPADRREDAARTLDEIAHGRRHLDPTARGEAIALRPAVDGEAG 384

Query: 531 GSTKEEKLLSL--RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
           G + + +   L   + + K      Y+  + D++E K+ ++ L  AK+ AE     K +F
Sbjct: 385 GESGKTESFPLAYSMALVKTAAGPLYAAILRDLTEEKRLEHTLRDAKEQAEDGQRIKMEF 444

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
           LA +SHEIRTP+  +IG + ++ +             YA  I  S   +L ++ND+LD S
Sbjct: 445 LATMSHEIRTPMNGVIGMAGLLLDTAL----QADQRGYAETIRDSAESLLVVINDILDFS 500

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQI 707
           KI++G++ L      L   V     ++   A  K + + +     +   +L D   ++QI
Sbjct: 501 KIDAGRLELEIGEFELVPLVESVAEILAPRAVAKGLDLASFVPPGLRGTLLGDAGRLRQI 560

Query: 708 ALNILSNAIHFTPSGGQIIISTTHT--------SNE--EVILRVRDTGVGMTNYELEKAM 757
            LN+  NA+ FT SG  + I                   V   VRDTG+G+   +  +  
Sbjct: 561 LLNLAGNAVKFTDSGS-VTILLNEEAPIDNDSGDGGGVRVRFEVRDTGIGIPEEDRPRLF 619

Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
             F Q+ +S   R  GTGLGL + K + +   G+  + S P  G++  +  PL   +
Sbjct: 620 TMFSQVDSSPARRHGGTGLGLAICKRLTELMGGRIGLDSHPGTGSVFWVSVPLKRGA 676


>gi|116251211|ref|YP_767049.1| two component sensor histidine kinase transcriptional regulatory
           protein [Rhizobium leguminosarum bv. viciae 3841]
 gi|115255859|emb|CAK06940.1| putative two component sensor histidine kinase transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 769

 Score =  337 bits (863), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 135/688 (19%), Positives = 261/688 (37%), Gaps = 56/688 (8%)

Query: 161 IDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKE 220
           +   A  I+  + + +G +     ++ +   D  A    +            G S V   
Sbjct: 96  VFADAADIFD-SGDITGAQARLAKYLPQDRLDSGAFVLLVQASGKVFAATTAGLSHVGSN 154

Query: 221 KYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINL 280
             D F + S     R  ++   +           +            +    ++   +  
Sbjct: 155 VGDFFPEVSA--IRRFGDRADVIETTIGGVPHYAEITLMGNAGGYIVAATSLDEIDRLWR 212

Query: 281 NQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD---EGENLTPETVDKCPIPFFVYS 337
            +           ++      Y  +          D   E        + +     + + 
Sbjct: 213 EELALNVTLFAGISSILLVILYAYYTQVKRARDADDIFLESNLRVETALSRGRCGLWDFD 272

Query: 338 -HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA 396
                F+ + S   +      D     G  + L+      D+  +  +       +    
Sbjct: 273 FENREFFWSRSMYDMLGLPGSDKTMGFGEAARLMH----PDDGGLYEIARAIGKGSSGQV 328

Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
             ++  ++    + + M        +     M   GI  +  +     ++      +L  
Sbjct: 329 D-QIFRMRHAGGHYVWMRARAQVIRSNSGR-MHLIGIAMDVTEQHRLAQRYAEADQRLAD 386

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
            +E TS+   + ++   ++  N    + +G P   ++       +     +     +   
Sbjct: 387 AIECTSEAFVLWDKNDRLVMCNTHFQQAYGLPDSVLVPGTERSTV---NAAAARPVIERR 443

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH--- 573
           +S        + T     +E+ L +     +            DI+  K+ + +L     
Sbjct: 444 ISDADGSGYSRTTEVQLADERWLQINERRTR---DGGRVSVGTDITLMKRHQERLRESER 500

Query: 574 --------------------------------AKKIAEKESSHKSDFLARVSHEIRTPLT 601
                                            K+ AE  +  KS+FLA +SHE+RTPL 
Sbjct: 501 RLMATIGDLSASRQTLEIQKSELSTANANYQAEKERAEAANKAKSEFLANMSHELRTPLN 560

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           AI+GFSE+++NQ FGPLG+ +Y EYA  I  SG  +L+++ND+LD+SKIE+G + LH E 
Sbjct: 561 AILGFSEILQNQMFGPLGSLKYDEYARDIHDSGKHLLNVINDILDMSKIEAGHVRLHCER 620

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           + L   + E++    + A EK I+I     + +  ++AD R++KQ+ LN+LSNA+ FT +
Sbjct: 621 IDLVPLIEESLRFTAMPAAEKNIVIEQRICSGL-TLMADRRAMKQVLLNLLSNAVKFTDN 679

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           GG+I + T       V + + DTG+G+    L K  +PF Q+ +       G+GLGL ++
Sbjct: 680 GGRIALRTRRVD-GAVFVTIADTGIGIPRSALSKIGQPFEQVQSQYAKSKGGSGLGLAIS 738

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +++   + G+  I S  A GT+I +  P
Sbjct: 739 RSLTSLHGGRMKIRSREAVGTVISLRIP 766



 Score = 44.6 bits (104), Expect = 0.061,   Method: Composition-based stats.
 Identities = 22/247 (8%), Positives = 55/247 (22%), Gaps = 7/247 (2%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN--HIGDLLKRQNTW 143
            W+ D        S  +   +G        M   + + ++H D      I   + + ++ 
Sbjct: 268 LWDFDFENREFFWSRSMYDMLGLPGSDKT-MGFGEAARLMHPDDGGLYEIARAIGKGSSG 326

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                         YV +   A  I S +         GI       +         D++
Sbjct: 327 QVDQIFRMRHAGGHYVWMRARAQVIRSNSGR---MHLIGIAMDVTEQHRLAQRYAEADQR 383

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL-RMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
            +   E       +  +   +    +       + + V       +  +           
Sbjct: 384 LADAIECTSEAFVLWDKNDRLVMCNTHFQQAYGLPDSVLVPGTERSTVNAAAARPVIERR 443

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
            S+               ++   +      ++  + S                +    L 
Sbjct: 444 ISDADGSGYSRTTEVQLADERWLQINERRTRDGGRVSVGTDITLMKRHQERLRESERRLM 503

Query: 323 PETVDKC 329
               D  
Sbjct: 504 ATIGDLS 510


>gi|255533739|ref|YP_003094111.1| PAS sensor protein [Pedobacter heparinus DSM 2366]
 gi|255346723|gb|ACU06049.1| PAS sensor protein [Pedobacter heparinus DSM 2366]
          Length = 797

 Score =  337 bits (863), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 98/538 (18%), Positives = 200/538 (37%), Gaps = 31/538 (5%)

Query: 280 LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-H 338
             +         L+  ++    ++S +         +             P    +    
Sbjct: 137 APRKLSDAQKEGLEILARTVVAHISLKKKSEALIANNHRYEELLNITAVSPEIHCILDYT 196

Query: 339 GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398
           G + + N +   + +Y   + I +        +          + +     +        
Sbjct: 197 GKVLFINNAITNILEYTVEEAIGLNIWNFCHREDIDRIVKIIEEGLRNKIKE-----FVI 251

Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458
               +            +         +N        +  + +  + ++    M+L  + 
Sbjct: 252 DFRIVSKTGVIRWLGWSMV-------AKNGRWYAYGRDITENKKVEHEL----MKLSFVA 300

Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
              ++ I I +    +   N A  K+ G+ ++D+  +     +      +          
Sbjct: 301 SKVNNAIVINDANNHVTWVNEAFEKITGFNLDDLKGRRLGDLIAGPETDMALMERARA-Q 359

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHA 574
             L Q+     L   K+ + + L I    +             + DI++ K+ + ++  A
Sbjct: 360 TKLNQSFTVDLLAYRKDGQPIWLSIYNTVVFNDLGNVEIEVEIIIDITDKKRVEREMLEA 419

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
           K+ A + S  K  FL+ +SHEIRTPL A+IG + ++             IE  N +  SG
Sbjct: 420 KEQALQLSEAKEMFLSVMSHEIRTPLNAVIGMTHLLIEND----PRASQIEDLNILKFSG 475

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
             +L+I+ND+LD +K+E+G + L   P S+    ++ I+ + + A +K  ++   + + I
Sbjct: 476 ENLLNIINDILDFTKMETGNLQLEALPFSMKALTTDIITSLYVGATKKGNILELLYDDQI 535

Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV----ILRVRDTGVGMTN 750
           P +  D   + QI +N+L NAI FT  G +II+S      + V       + DTG+G+  
Sbjct: 536 PHLSGDKTRLYQILMNLLGNAIKFTDQG-KIILSVKLLEQDAVNASLYFEISDTGIGIPE 594

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            +L    + F Q       +  GTGLGL + K +++    +  + S    GT      
Sbjct: 595 DKLSYIFETFTQAKTDISRKYGGTGLGLAITKKLLELYNSEIQVKSREGAGTTFSFTL 652


>gi|83589679|ref|YP_429688.1| multi-sensor signal transduction histidine kinase [Moorella
           thermoacetica ATCC 39073]
 gi|83572593|gb|ABC19145.1| multi-sensor signal transduction histidine kinase [Moorella
           thermoacetica ATCC 39073]
          Length = 604

 Score =  337 bits (863), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 96/463 (20%), Positives = 180/463 (38%), Gaps = 38/463 (8%)

Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
                    G +S L+    L        + L+ + R      +     +       ++ 
Sbjct: 176 PEASLSAAMGAMSRLILYAGLVAVLLATILALFAARRVTRPLKSLSLAARQMARGDFSVR 235

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII 474
             P   A++  +          ++   +    +  E  +L  ++   +DG+      G +
Sbjct: 236 V-PVASADELGQLAGSFNFLAGELSRTVA--ALSREKEKLNRVVRDMTDGVLAFTASGRV 292

Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
           L  N    KL G P+      P           +++     +        +         
Sbjct: 293 LFANPRAEKLLGLPLSPGAELPV---------ELLDPLRAAVAGEGTTGEINW------- 336

Query: 535 EEKLLSLRIIIKKLPF--SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
           +E++L++R    +            + DI+  K+ +                + +FLA V
Sbjct: 337 QERVLAVRAAPLQEEDPCGEAAVAILQDITTQKKME--------------QMRREFLASV 382

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHE+RTPL+ I G+ E + +      G     EY   I    N +  +V+DL D++K+ +
Sbjct: 383 SHELRTPLSFIQGYGEALADGL--ATGEKERQEYTGIILAEANRLRRLVDDLFDLNKMAA 440

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712
           G + L    V   E V+      Q    E  +++       +P + AD   ++Q+ +N+L
Sbjct: 441 GHLPLELAEVDPGELVTGVARKYQPLLAEHGLVLEVELEPYLPPVWADAGRLEQVLVNLL 500

Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
            NA   T  GG+I IS    +  E+ + V DTG G+   EL    + F ++  S+     
Sbjct: 501 DNARRHTSPGGRITISAGL-AGRELKISVADTGKGIPAGELPYIWERFYKVDKSRSRGDS 559

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
           G+GLGL + K +V+A+ G+  + S P +G++     PL+  S 
Sbjct: 560 GSGLGLAIVKGLVEAHGGRVEVVSEPGRGSIFSFYLPLHIDSE 602



 Score = 41.2 bits (95), Expect = 0.77,   Method: Composition-based stats.
 Identities = 27/264 (10%), Positives = 54/264 (20%), Gaps = 35/264 (13%)

Query: 216 SVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDF 275
            V         + S    +   +++       A     +         +           
Sbjct: 166 EVNGAVILFAPEASLSAAMGAMSRLILYAGLVAVLLATILALFAARRVTRPLKSLSLAAR 225

Query: 276 HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV 335
                +   +       +                   A     +      V         
Sbjct: 226 QMARGDFSVRVPVASADELGQLAGSFNFLAGELSRTVAALSREKEKLNRVVRDMTDGVLA 285

Query: 336 YSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394
           ++  G + +ANP    L                            A  PV L    R  +
Sbjct: 286 FTASGRVLFANPRAEKLLGL--------------------PLSPGAELPVELLDPLRAAV 325

Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM-- 452
           A       I W       +         + P       I  +    +  ++     +   
Sbjct: 326 AGEGTTGEINWQER---VLAVRAAPLQEEDPCGEAAVAILQDITTQKKMEQMRREFLASV 382

Query: 453 --QLCSIL-------EATSDGIAI 467
             +L + L       EA +DG+A 
Sbjct: 383 SHELRTPLSFIQGYGEALADGLAT 406


>gi|255523785|ref|ZP_05390750.1| multi-sensor hybrid histidine kinase [Clostridium carboxidivorans
           P7]
 gi|255512488|gb|EET88763.1| multi-sensor hybrid histidine kinase [Clostridium carboxidivorans
           P7]
          Length = 945

 Score =  337 bits (863), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 91/356 (25%), Positives = 165/356 (46%), Gaps = 10/356 (2%)

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           +L  +   I  ++      + N A +K FG    D+  +      + +T + ++    E+
Sbjct: 193 LLNNSESQIWALSNVTSYATANEAHAKFFGKTKSDLEYQDLYDIFDIDTANKLSKSNWEL 252

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHA 574
                    E        E +LL ++   ++    +      T +DI+E +  + +L  A
Sbjct: 253 FQKGEPAEKELEIKNFKGENRLLKIKSRPQRDDKGNIQYLICTANDITEQRLAEKELYKA 312

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
           K+ AE  ++ KS FLA +SHEIRTP+  I GF E+++             E+      + 
Sbjct: 313 KEQAEAANTAKSRFLANMSHEIRTPMNGIFGFLELLQATNLSL----EQKEFIREAKSAS 368

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
            ++L I+ND+LD SKIE+ K+ +     +L  ++ +A+SL+   A EK + + T    N+
Sbjct: 369 EILLHIINDILDFSKIEAKKLTMEKIKFNLRNSIEDAVSLLAPKAAEKNLELYTMINPNV 428

Query: 695 PR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSN--EEVILRVRDTGVGMTN 750
           P  ++ D   ++Q+  N++SNA+ FT  G   + +      N    +   V+DTG+G+  
Sbjct: 429 PEEVIGDPSRLRQVLNNLISNAVKFTSKGEISVKVDCLKEENKIAFLNFEVKDTGIGIRK 488

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
             +    K F Q   S   +  GTGLGL ++  +V    GK  + S   +G+  + 
Sbjct: 489 EHINTIFKSFSQADASTTRKYGGTGLGLAISSELVKMMGGKIQVESIVGEGSTFKF 544


>gi|222148029|ref|YP_002548986.1| two component sensor kinase [Agrobacterium vitis S4]
 gi|221735017|gb|ACM35980.1| two component sensor kinase [Agrobacterium vitis S4]
          Length = 790

 Score =  337 bits (863), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 120/553 (21%), Positives = 222/553 (40%), Gaps = 51/553 (9%)

Query: 301 EYLSHRNHPSLSA-YFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVD 358
            Y +       ++  F +        + +     + +         + S   +      +
Sbjct: 237 AYFAQAKRARETSDVFVDSNRRVETALSRGRCGLWDFDLASRKLVWSRSMFDILGLPPSN 296

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
           +       + L+      D+  +  +              ++  ++    + + +     
Sbjct: 297 EPLGFADAARLMH----PDDGNLYALARTIGRDGDRHID-QVFRMRHANGHYVWLRARAQ 351

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
                        GI  +  +     ++      +L   +E TS+   + ++   ++  N
Sbjct: 352 VIRTSSGSP-HVIGIAMDVTEQHRLAQRYAEADQRLADAIECTSEAFVLWDKNDRLVMCN 410

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
                ++G P   ++     V       +     +   ++    +   + T     +E+ 
Sbjct: 411 AHFQHVYGLPDSVLVP---GVERAVVDAAAARPIIQRRIADPSAKGSSRTTELQLADERW 467

Query: 539 LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA------------------------ 574
           L +     +            DI+  K+ + +L                           
Sbjct: 468 LQINERRTR---DGGLVSVGTDITLLKRHQERLREQERRLMATIGDLSSSQKKLERQKAE 524

Query: 575 -----------KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
                      K+ AE  +  KS+FLA +SHE+RTPL AI+GFSE++    FGP+G+P+Y
Sbjct: 525 LSEANEKYLAEKQRAEAANKAKSEFLANMSHELRTPLNAILGFSEILSTGMFGPIGSPKY 584

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            EYA  I  SG  +L+++ND+LD+SKIE+G M L  E V     + E + L  + A +K 
Sbjct: 585 GEYARDIHDSGKHLLNVINDILDMSKIEAGHMLLKCENVDFASLIDETLRLTTISAKDKN 644

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
           I I    A+ +  + AD R++KQI LNILSNA+ FT  GG+I +   H  +  V L V D
Sbjct: 645 IAIEQRIASGL-AMTADRRALKQILLNILSNAVKFTNEGGRISVR-AHKIDGAVRLLVSD 702

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TG+G+    + K  +PF Q+ +       G+GLGL ++++++  + G   I S   KGT+
Sbjct: 703 TGIGIPKQAISKIGQPFEQVQSQYAKSKGGSGLGLAISRSLIMLHGGSLRIRSREGKGTV 762

Query: 804 IEIIFPLYDTSHP 816
           + I  P   +  P
Sbjct: 763 VSINVPDSPSPLP 775



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 41/399 (10%), Positives = 98/399 (24%), Gaps = 47/399 (11%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNY-----AFKMIGMRLCD-----------VSDILHID 128
           F   +D  G +   S      +G           +     D              I  + 
Sbjct: 132 FVLLLDPEGRVVASSGNGSSFVGMQIMALFPQVAVLRNFGDQTGAVETDINGFRHIAVLT 191

Query: 129 PNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNR 188
           P    G L+   ++       W  E       + L      + +    G          R
Sbjct: 192 PTGTDGALVLAAHSLKSAADYWRAE-------LALNVTLFSAISLILMGILYAYFAQAKR 244

Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA 248
                        +  + L   + G    +     +   +S    L +      L    A
Sbjct: 245 ARETSDVFVDSNRRVETALSRGRCGLWDFDLASRKLVWSRSMFDILGLPPSNEPLGFADA 304

Query: 249 -----HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE-- 301
                  D  L      +    +  + +       N +    +     ++ +S       
Sbjct: 305 ARLMHPDDGNLYALARTIGRDGDRHIDQVFRMRHANGHYVWLRARAQVIRTSSGSPHVIG 364

Query: 302 -YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDD 359
             +       L+  + E +    + ++     F ++  +  L   N  F  +        
Sbjct: 365 IAMDVTEQHRLAQRYAEADQRLADAIECTSEAFVLWDKNDRLVMCNAHFQHVYGLPDSVL 424

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
           +              + D  A +P++  R        S+R   +Q   E  L +      
Sbjct: 425 VPG--------VERAVVDAAAARPIIQRRIADPSAKGSSRTTELQLADERWLQINERRTR 476

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458
                        +  +    + ++ ++  +  +L + +
Sbjct: 477 DG-------GLVSVGTDITLLKRHQERLREQERRLMATI 508



 Score = 42.7 bits (99), Expect = 0.29,   Method: Composition-based stats.
 Identities = 24/249 (9%), Positives = 60/249 (24%), Gaps = 11/249 (4%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAF-KMIGMRLCDVSDILHIDPNNHIGDLL---KRQN 141
            W+ D        S  +   +G     + +G    D + ++H D  N         +  +
Sbjct: 270 LWDFDLASRKLVWSRSMFDILGLPPSNEPLG--FADAARLMHPDDGNLYALARTIGRDGD 327

Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
               +         +  V +   A  I + +         GI       +         D
Sbjct: 328 RHIDQVFRMRHANGHY-VWLRARAQVIRTSSGSP---HVIGIAMDVTEQHRLAQRYAEAD 383

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL-RMKNKVSSLTEYYAHKDDVLKTEKYP 260
           ++ +   E       +  +   +    +   H+  + + V       A  D         
Sbjct: 384 QRLADAIECTSEAFVLWDKNDRLVMCNAHFQHVYGLPDSVLVPGVERAVVDAAAARPIIQ 443

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
              ++ S+            ++   +      ++    S                ++   
Sbjct: 444 RRIADPSAKGSSRTTELQLADERWLQINERRTRDGGLVSVGTDITLLKRHQERLREQERR 503

Query: 321 LTPETVDKC 329
           L     D  
Sbjct: 504 LMATIGDLS 512


>gi|42523313|ref|NP_968693.1| sensory transduction histidine kinase [Bdellovibrio bacteriovorus
           HD100]
 gi|39575519|emb|CAE79686.1| Sensory transduction histidine kinase [Bdellovibrio bacteriovorus
           HD100]
          Length = 720

 Score =  337 bits (863), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 114/519 (21%), Positives = 203/519 (39%), Gaps = 38/519 (7%)

Query: 324 ETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
             V  CP+     +      + N +++ + K++    +         L        + + 
Sbjct: 74  RIVFSCPVGMYCTWGPQRRVFYNDAYIPILKHRHPHALGSP------LHEVWPEVWDQVH 127

Query: 383 PVMLYRSDRTCIAASARLHTIQWNREN-SLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
            +         +  S     I+ + +      T+      N   +         +   + 
Sbjct: 128 AIASKVESGGFVLESDVQFDIEVDGKPQGNYYTYGNSPLFNAEGKVSGMLCTILDTTTSV 187

Query: 442 INKRKME-----------IEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPV 489
              +  E            E  +L SILE     +A+++  E     TN +   LF    
Sbjct: 188 KRNQAAEESLARSNQEVRAERRKLRSILEKAPIAMAVLDGPEHRFSMTNDSYRDLF-LGD 246

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR-QTLEKITLGSTKEEKLLSLRIIIKKL 548
            D+  +       +     +   L E+       +           +    S+ + +   
Sbjct: 247 CDVTGRRVKDVFPKTEKIGLIALLDEVYRTGKVFEAKNYEIHDRRADGVEFSVFVDVVYQ 306

Query: 549 P------FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
           P            L  ++++E    +  L  AK  AE  +  KS FLA +SHEIRTPL  
Sbjct: 307 PIYDFNDEIEGLVLAANNVTEQVMAERALQAAKSAAENANQAKSAFLANMSHEIRTPLGV 366

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           I+GF+E+I  Q    L       Y   I R+G  +  I++D+LD+SKIE+GK  +   PV
Sbjct: 367 ILGFAEIIGTQD---LDESERKNYFEIIHRNGLSLTRIIDDILDLSKIEAGKFEIEKSPV 423

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPS 721
            L + + E +++    A+ K I +        P I L+D+  ++Q+ +N++ NAI FT  
Sbjct: 424 KLKKLLQEVLTMFFDQASRKNIYLNYELGEIAPLIILSDVVRIRQVLVNLIGNAIKFTMK 483

Query: 722 GGQIIISTTHTS----NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
           G  + +S          ++++  + DTG+GMT  + E+  +PF Q   +   +  GTGLG
Sbjct: 484 GS-VKVSCRAEQVTATRKKIVFSIEDTGIGMTQEQAERLFQPFTQADATSTRQFGGTGLG 542

Query: 778 LPLAKAMVDANMGKFY-IFSTPAKGTLIEIIFPLYDTSH 815
           L L++ +  A  G    +   P +G   E  F   D S 
Sbjct: 543 LALSRNLARALGGDVSIVRCEPRQGCTFEFSFQAEDVSE 581



 Score = 44.2 bits (103), Expect = 0.084,   Method: Composition-based stats.
 Identities = 15/143 (10%), Positives = 42/143 (29%), Gaps = 4/143 (2%)

Query: 94  YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN--TWYGKTTLWP 151
                ++     + +     +G  L +V   +  D  + I   ++               
Sbjct: 91  RRVFYNDAYIPILKHRHPHALGSPLHEVWPEVW-DQVHAIASKVESGGFVLESDVQFDIE 149

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
           ++G            P+++   + SG     I+         +A  + L +    +   +
Sbjct: 150 VDGKPQGNYYTYGNSPLFNAEGKVSGML-CTILDTTTSVKRNQAAEESLARSNQEVRAER 208

Query: 212 KGHSSVEKEKYDIFSQQSPPPHL 234
           +   S+ ++     +    P H 
Sbjct: 209 RKLRSILEKAPIAMAVLDGPEHR 231


>gi|255036287|ref|YP_003086908.1| PAS/PAC sensor hybrid histidine kinase [Dyadobacter fermentans DSM
           18053]
 gi|254949043|gb|ACT93743.1| PAS/PAC sensor hybrid histidine kinase [Dyadobacter fermentans DSM
           18053]
          Length = 785

 Score =  337 bits (863), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 103/548 (18%), Positives = 207/548 (37%), Gaps = 64/548 (11%)

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKS 356
           ++  +        +     +E                 +     +   N + + + K K+
Sbjct: 129 EQPGKLDGVLQDLTQRKLVEE---KLSVIFQYSTDAHLLLDESGITDCNEAAVKMLKCKN 185

Query: 357 VDDIE--IAGGLSTLLDAPKLSDNNAIKPVMLY--------------RSDRTCIAASARL 400
             ++        S          +     +                 R D         L
Sbjct: 186 KSELLSIHPARFSPEFQPDGRRSSEKSIEMDRLAYENGYNRFEWVHKRMDGEEFPVEVTL 245

Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
           + +  + +  L + +                    +    +  +  +      L    + 
Sbjct: 246 NPVMISSKKVLLVVWH-------------------DITHRKRAEELIRRNEAMLAESQQL 286

Query: 461 TSDGIAIINREGIIL---STNRAVSKLFGYPVEDILRKP--FTVFLEQNTPSVMNHYLTE 515
           T  G    +    I      +    ++FG        +   F+  +  +   +   ++ +
Sbjct: 287 THSGSWEADL---ITGQNYWSDEAFRIFGLEPGSAGPETELFSKMIHPDDMLLYKSHIRD 343

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS----LTMHDISEWKQEKNKL 571
            ++     +     +    + ++  +  I K L  S          + DI E K+ + +L
Sbjct: 344 AINELKPASFHLRIVL--PDGRVKFIHAIGKPLIDSGGRVTKLYGAIMDIDEQKKAEQEL 401

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
             AK+ AE  +  KS FL+ +SHEIRTP+ A+IGF+ ++  Q       P  +EY N + 
Sbjct: 402 IKAKEQAEMAAVAKSQFLSTMSHEIRTPMNAVIGFTHLLLQQD----PKPEQMEYLNILK 457

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
            S   +L ++ND+LD SKIE+GK+       ++   +    S V   ANEK I+++   +
Sbjct: 458 FSAENLLVLINDILDFSKIEAGKIEFEEVDFNVLALLENIRSGVLQKANEKGIMLKLKVS 517

Query: 692 NNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH--TSNEEVIL--RVRDTGV 746
           N++   ++ D   + QI  N++SNA+ FT SG ++ IS      +++ V +  RV DTG+
Sbjct: 518 NDVNIMVVGDPTRLGQILTNLVSNAVKFTESG-KVTISAAVSARADKHVTIDFRVEDTGI 576

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL--I 804
           G+   +LE     F Q  +    +  G+GLGL + K +++      ++ S    G+    
Sbjct: 577 GIPPEKLENIFDSFTQATSDTTRKYGGSGLGLTITKRLLELQKSNIHVDSEQGNGSAFYF 636

Query: 805 EIIFPLYD 812
            + FP+ +
Sbjct: 637 SLSFPISE 644



 Score = 43.9 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 18/162 (11%), Positives = 46/162 (28%), Gaps = 24/162 (14%)

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL--RKPFTV-FLEQNTP 506
               L  ++   + GI   +        +    +L GY   +I    + FT   +     
Sbjct: 6   SAESLDMVISGINAGIWDWDFNTGKQVWSDRFFELLGYQPGEIPTGYESFTQKLVHPEDK 65

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL---------- 556
           S++   + E L  ++   +         + +    R  ++         +          
Sbjct: 66  SIVADAIREQLENNVPYLVHVRLKTKNNDYRYFECRGNVRFENGKPERMVGSVSDIHDNM 125

Query: 557 -----------TMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
                       + D+++ K  + KLS   + +        +
Sbjct: 126 MQKEQPGKLDGVLQDLTQRKLVEEKLSVIFQYSTDAHLLLDE 167


>gi|312135285|ref|YP_004002623.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor owensensis OL]
 gi|311775336|gb|ADQ04823.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor owensensis OL]
          Length = 575

 Score =  336 bits (862), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 89/369 (24%), Positives = 164/369 (44%), Gaps = 31/369 (8%)

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
             +L S+L++   GI   +    IL  NR    +              +         + 
Sbjct: 235 RKRLTSLLDSIDIGIIFFDVNKRILMFNRGAENIL--------ETNLKIGFSLLECVRVY 286

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEE-KLLSLRIIIKKLPFS-SCYSLTMHDISEWKQEK 568
                +   D +   E+    S   + K L +               L + DI+  K+ +
Sbjct: 287 ELFEFLFQQDTK---ERELEISINNKLKFLKVSKKKISYEDGKEGILLILSDITFLKKLE 343

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
                           +SDF+A VSHE++TPLT+I GF E +K+           I++ N
Sbjct: 344 --------------RVRSDFVANVSHELKTPLTSIKGFVETLKDGAID--DKDVAIKFLN 387

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I+     ++ ++NDLL +S+IE+  M +  E V++ E V E+I L+++ A +K I    
Sbjct: 388 IIEVEVERLVRLINDLLYLSEIENAAMPILDEKVAVKEVVLESIELLKIKAEKKNIQFDI 447

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748
                +  +      +KQI +N++ NAI +    G++ ++     N  V+++V+DTG+G+
Sbjct: 448 KVPEGL-EMNIYRDWLKQIFINLIDNAIVYNKENGKVWVTLE-KPNGMVVIKVKDTGIGI 505

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
              E+E+  + F ++   +  +  GTGLGL + K +V+   GK ++ S    G+   +  
Sbjct: 506 PEKEIERIFERFYRVDKGRSRKLGGTGLGLSIVKHIVELYGGKIWVKSQEGSGSEFTVTI 565

Query: 809 PLYDTSHPH 817
           P+   + PH
Sbjct: 566 PIKKKADPH 574


>gi|71736609|ref|YP_273435.1| two-component sensor/regulator [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71557162|gb|AAZ36373.1| two-component hybrid sensor and regulator alr3120 [Pseudomonas
           syringae pv. phaseolicola 1448A]
          Length = 576

 Score =  336 bits (862), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 120/529 (22%), Positives = 212/529 (40%), Gaps = 50/529 (9%)

Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS-----TLLDAPKLSDNNAIKPVM-- 385
                HG +   N     +  Y S D ++            L+       +    P+   
Sbjct: 48  IATDEHGVIQIFNVGAERMLGYHSEDVVDKITPADISDPAELIIRAAALSHELNTPITPG 107

Query: 386 ---LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
              +       I     L  I+ +     AM        +     +    I  ++   + 
Sbjct: 108 FEAMVFKASRGIEDIYELTYIRKDGSRLSAM-VSVTSLRDSAETIIGYLLIGTDNTARKQ 166

Query: 443 NK-------RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
            +       +++  +     S++E+  D + + + +GII   N+ +  L G   ++++  
Sbjct: 167 EEEAQALLDQRLRDQQFYTRSLIESNIDALMMTDPQGIISDVNKQMMALTGRTRDELIGA 226

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--C 553
           P   F     P+  +  +  +LS       E         E ++S               
Sbjct: 227 PCKNFF--TDPASADAAIKRVLSEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRKLKG 284

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
                 D++E K+ +  L       E  S  KS+FLA +SHE+RTPL A+IGFSE +K+ 
Sbjct: 285 VFAAARDVTERKRFERTLEEKNVELEHASHMKSEFLATMSHELRTPLNAVIGFSEALKDG 344

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
             G + +     Y   I  SG  +L ++ND+LD+SK+E+G M L  EPV L+E +S ++ 
Sbjct: 345 MVGDMTDA-QRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELEPVDLEELLSNSLL 403

Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
           +V+  A  +RI ++     +   +  D R  KQI  N+L+NA+ F+  GG + ++    S
Sbjct: 404 IVREQAALQRIQLKLETEADFGLLELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRQVS 463

Query: 734 -----------------------NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
                                   + + L V DTG+G+   ++ K  K F QI +    +
Sbjct: 464 FAHAGVIEGDWPAHTFPLPSSDYEQFLELSVSDTGIGIAQSDMNKLFKAFSQIDSGLARK 523

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819
            EGTGLGL + K + + + G   + S    G    +  P+     P +C
Sbjct: 524 FEGTGLGLAMVKQLTELHGGCVAVASVKDLGARFVVWLPI----RPPEC 568



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/238 (11%), Positives = 64/238 (26%), Gaps = 7/238 (2%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            D  G + ++++++    G    ++IG    +         +  I  +L        + T
Sbjct: 199 TDPQGIISDVNKQMMALTGRTRDELIGAPCKNFFTDP-ASADAAIKRVLSEHKVSDYELT 257

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           +   +GT     +   A   + R+R+  G   F                +  + +  H  
Sbjct: 258 VRAYDGTETV--VSYNAATFHDRDRKLKGV--FAAARDVTERKRFERTLEEKNVELEHAS 313

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK-VSSLTEYYAHKDDVLKTEKYPLLTSEES 267
            +K    +    +              +K+  V  +T+        +      LL+    
Sbjct: 314 HMKSEFLATMSHELRTPLNAVIGFSEALKDGMVGDMTDAQRRYIGDIFNSGQHLLSLIND 373

Query: 268 SLP-EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
            L   + +   + L             +      +    R    L    D G      
Sbjct: 374 ILDLSKVEAGMMTLELEPVDLEELLSNSLLIVREQAALQRIQLKLETEADFGLLELDR 431



 Score = 44.6 bits (104), Expect = 0.069,   Method: Composition-based stats.
 Identities = 26/270 (9%), Positives = 69/270 (25%), Gaps = 36/270 (13%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGM-RLCDVSDILHI-DPNNHIGDLL--------- 137
            D HG ++  +    + +G ++  ++      D+SD   +      +   L         
Sbjct: 50  TDEHGVIQIFNVGAERMLGYHSEDVVDKITPADISDPAELIIRAAALSHELNTPITPGFE 109

Query: 138 ------KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN 191
                  R      + T    +G+   +   ++   +        G+   G    N    
Sbjct: 110 AMVFKASRGIEDIYELTYIRKDGS--RLSAMVSVTSLRDSAETIIGYLLIGT--DNTARK 165

Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL------------RMKNK 239
                   LD++   L + +    S+ +   D      P   +            R +++
Sbjct: 166 QEEEAQALLDQR---LRDQQFYTRSLIESNIDALMMTDPQGIISDVNKQMMALTGRTRDE 222

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
           +          D          + SE      +      +  +        T  +  ++ 
Sbjct: 223 LIGAPCKNFFTDPASADAAIKRVLSEHKVSDYELTVRAYDGTETVVSYNAATFHDRDRKL 282

Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
               +     +    F+         ++  
Sbjct: 283 KGVFAAARDVTERKRFERTLEEKNVELEHA 312


>gi|323490449|ref|ZP_08095656.1| alkaline phosphatase synthesis sensor protein [Planococcus
           donghaensis MPA1U2]
 gi|323395853|gb|EGA88692.1| alkaline phosphatase synthesis sensor protein [Planococcus
           donghaensis MPA1U2]
          Length = 465

 Score =  336 bits (862), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 86/418 (20%), Positives = 180/418 (43%), Gaps = 29/418 (6%)

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI----EVMQLC 455
           +  I+   E ++ +    +              +         N +++      E  +L 
Sbjct: 70  IKPIENATETAMELAKGNYVARASESNAYNSIELSRTINVLARNLQEITAIRVMEQERLK 129

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           +++E     + +I+++G +   N+  S+ FG   E +L K +           + +++  
Sbjct: 130 TLIENMGSALIMIDKQGAVSLVNKPFSEEFGLSPEIVLGKFYKEIQVPI---EVENFIES 186

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSH 573
           +   +    ++   L   K  K  ++                +   DI+E K+ +     
Sbjct: 187 VFMTETHSRVQIEFLSGLK-MKNFNVYGAPVIGEHERWLGIVIVFQDITELKKLE----- 240

Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
                      + DF+A VSHE+RTP+T+I GFSE + +  +        + +   +   
Sbjct: 241 ---------QIRKDFVANVSHELRTPVTSIKGFSETLLDGAY--KDTETLLSFLEIMHTE 289

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693
            N +  ++NDLLD+SK+E     ++ +P +++  +  A  ++Q   +EK I ++      
Sbjct: 290 SNRLEMLINDLLDLSKVEQSGFRVNAQPTNMEAVIKRAREMIQPKIDEKSIQLKLEIQP- 348

Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753
              +L D   + Q+ +N+L NA+ ++ +  +I I      N   I++V D G+G+ + E+
Sbjct: 349 -VTVLGDANRLIQVMMNLLINAVTYSSNYTEITIRLFRKDN-RAIIQVEDQGIGIESSEI 406

Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
            +  + F ++  ++     GTGLGL + K +++A+ G   + ST   GT   I  PL 
Sbjct: 407 GRLFERFYRVDRARSRNSGGTGLGLSIVKHLIEAHHGHVEVDSTVGVGTTFTIYLPLA 464


>gi|307300057|ref|ZP_07579842.1| integral membrane sensor hybrid histidine kinase [Sinorhizobium
           meliloti BL225C]
 gi|306904946|gb|EFN35529.1| integral membrane sensor hybrid histidine kinase [Sinorhizobium
           meliloti BL225C]
          Length = 917

 Score =  336 bits (862), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 118/638 (18%), Positives = 224/638 (35%), Gaps = 27/638 (4%)

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244
            +  +    R          S +        ++ +    +   +                
Sbjct: 23  RITDLPISARVAALTAAGLISLVLSSLFLTQALYRSAERMAETRELFDRAASAASAHVAF 82

Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY-TKKQYFGTLQNNSKESFEYL 303
               +    L      L+ S+ ++   +E              +    ++       E  
Sbjct: 83  GDLRYWLTDLSVSL--LMNSQRNADEARERLQEQLAGLAKHAPEAVEAIRTEVDAYVETA 140

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIA 363
                         G  L  +                L     +     + + V   E  
Sbjct: 141 LQAADSYTQDNRIVGNALLAKARTHS--GKVDADLNRLVEQVKAEAEAARNEVVVQTEKT 198

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
              + +L    +   + +  ++L            RL+ +  +         IP E  ++
Sbjct: 199 ATTAAILVGGVVLIGSLLTLLVLRSIVGPLR----RLNRVIGDLTEGRYDVDIPEEGGDE 254

Query: 424 FPENMPQNGIEPEDV-DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
                    +  E   + +  + + E +   + + LE  SDG  + + E  IL  N    
Sbjct: 255 LGAMARTLSLFRESAIEKKKLEDEAERQRRTIAAALEVISDGFVLYDSEDRILVANSKYC 314

Query: 483 KLF-GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE----- 536
           ++F  +    +  + F   +EQN                     E++ L           
Sbjct: 315 EIFPSHKPNTLRGRSFREIVEQNLEMGQVDLEG---KSPQEWVDERVRLHRDPAGLVDEK 371

Query: 537 --KLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
                 +RI  +K+P          DI+E KQ + +L  AK  AE  +  KS FLA +SH
Sbjct: 372 RFGDKWVRISKRKIPD-GGTVAVYTDITELKQRQVELERAKSHAESANEAKSRFLASMSH 430

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           E+RTPL AIIG+SE++  +      +   +   + I  +G  +L ++ND+LD+SKIE+ K
Sbjct: 431 ELRTPLNAIIGYSEMLIEEARDHE-DEELVPDLDKIASAGRHLLSLINDILDLSKIEANK 489

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714
           M +  E  S+ + + +  + V              F  ++  + +D   ++Q   N+LSN
Sbjct: 490 MEVFLETFSVADLLRDVAATVAPLMARNGNEFTQDFETDLGEMHSDQTKLRQNLFNLLSN 549

Query: 715 AIHFTPSGGQIIISTTHT---SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           A  FT +GG++ +          + ++ +V DTG+GM+  + E+    F Q   S     
Sbjct: 550 AAKFT-NGGRVTLRVRREQRADRDWLVFQVTDTGIGMSPEQQERLFNAFTQADASTTRNY 608

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            GTGLGL + ++      G   + S   KG++  +  P
Sbjct: 609 GGTGLGLSITRSFCRMIGGVVTVESEVGKGSVFTMEVP 646



 Score = 41.9 bits (97), Expect = 0.45,   Method: Composition-based stats.
 Identities = 16/219 (7%), Positives = 48/219 (21%), Gaps = 3/219 (1%)

Query: 90  DAHGYLKEISEELPKTI-GNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           D+   +   + +  +    +    + G    ++ +         +    K    W  +  
Sbjct: 301 DSEDRILVANSKYCEIFPSHKPNTLRGRSFREIVEQNLEMGQVDLEG--KSPQEWVDERV 358

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +   L          +    R+        +          +   +R        +
Sbjct: 359 RLHRDPAGLVDEKRFGDKWVRISKRKIPDGGTVAVYTDITELKQRQVELERAKSHAESAN 418

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           E K    +    +              +  +     +     D          L S  + 
Sbjct: 419 EAKSRFLASMSHELRTPLNAIIGYSEMLIEEARDHEDEELVPDLDKIASAGRHLLSLIND 478

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
           + +        +  + +      L  +   +   L  RN
Sbjct: 479 ILDLSKIEANKMEVFLETFSVADLLRDVAATVAPLMARN 517


>gi|229916393|ref|YP_002885039.1| PAS/PAC sensor signal transduction histidine kinase
           [Exiguobacterium sp. AT1b]
 gi|229467822|gb|ACQ69594.1| PAS/PAC sensor signal transduction histidine kinase
           [Exiguobacterium sp. AT1b]
          Length = 575

 Score =  336 bits (862), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 93/461 (20%), Positives = 190/461 (41%), Gaps = 40/461 (8%)

Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
            +    ++        +  +L          I    +   +       AR++ ++ + E 
Sbjct: 152 RIWLTIALALFFSFFIILFVLQHLTNQFIRPIDEATIVLRELADGNYRARVYELRNDEET 211

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469
                 I     N    ++ ++                  +  +L S++E    G+ +++
Sbjct: 212 GSLAGSINVLARNLESISLGESV-----------------QRARLESLIEYMGAGLLLVD 254

Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
             GI+   NR+  ++F Y    I +    +       +++            + ++    
Sbjct: 255 ERGIVTLVNRSYREMFQYDDLSIGQFYHGILPSPEVETLIEDVYLTEEVHRRQLSIRTGF 314

Query: 530 LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
              T       +      L      +L  +DI+E K+ +                + DF+
Sbjct: 315 NQKTYMVSAAPIFSDTGMLR---GTTLLFNDITELKRLE--------------KMRKDFV 357

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDIS 648
           A VSHE++TPLT+I GFSE + +   G    P   + + + I +    +  +V DLL++S
Sbjct: 358 ANVSHELKTPLTSIRGFSETLLD---GAKEVPELRDQFLDIIQKEATRMQMLVEDLLELS 414

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIA 708
           ++E     +    V L++ V E   L+   A++K I +       +  + ADL  +KQ+ 
Sbjct: 415 RLERDDFQMELVSVDLNQLVDEVCLLLSQKASKKSIQLEAKHEGTV-VLQADLNRMKQVI 473

Query: 709 LNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
           +N+++NAI+++P G ++ I+    ++    LRV+D G+G+   E+ +  + F ++  ++ 
Sbjct: 474 MNLVANAINYSPEGSRVEIAVEAKADSY-KLRVKDNGIGIAEKEVSRIFERFYRVDKARS 532

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
               GTGLGL + K ++D +     + S   KGT   I FP
Sbjct: 533 RNSGGTGLGLAIVKHIIDLHHATIDVESEEGKGTTFTITFP 573


>gi|328544516|ref|YP_004304625.1| Multi-sensor signal transduction histidine kinase [polymorphum
           gilvum SL003B-26A1]
 gi|326414258|gb|ADZ71321.1| Multi-sensor signal transduction histidine kinase [Polymorphum
           gilvum SL003B-26A1]
          Length = 787

 Score =  336 bits (862), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 125/675 (18%), Positives = 238/675 (35%), Gaps = 69/675 (10%)

Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK-D 251
             AL + L          +     +      I +     PHL  +   + L         
Sbjct: 111 RSALQRVLADALPAGATSRGRSILLTDPDGMIVASAPLQPHLEGQPITALLGPSQPLTVF 170

Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL-------- 303
                       S   +L                +       +        +        
Sbjct: 171 GARAGVMMVDKGSAGEALATVHHLDGRLGMVAVMQPEKEIFADWRGNVSANVTLFVGTST 230

Query: 304 -----------SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLL 351
                                 +          +       F +       + + S   L
Sbjct: 231 VLLVLVYAFFSQATRAEQADEIYAATRTRIDTALTHGRCGLFDWDLARGRIFWSASLYDL 290

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411
              +  DDI     ++ L     +      + +       T      R+  ++    + +
Sbjct: 291 LGREPKDDILGFAEIADLTHPDDIDLYRLAETL-----LETGQTTVDRMFRMRHADGSWV 345

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471
            +      + +         GI  +  +      +     ++L   +E  S+   + N +
Sbjct: 346 WLRARGEVQTDPGRAEPHLIGICIDVTEQHELAEQSRTADLRLRDAIETISEAFVLWNAD 405

Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL-EKITL 530
             ++  N     L   P + +  +P   + E    +  +H  T  L              
Sbjct: 406 NELVICNSNYQSLHNLPEQAV--RPGAPYAEVMAAARNSHITTSPLHGGTPGAGANASYE 463

Query: 531 GSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK---------- 580
               + + L +    ++      +     DI+  K+ + +L  +++              
Sbjct: 464 AQLDDGRWLQIS---ERRTKDGGFVSVGTDITTLKRHEERLLDSERRLMATVSDLRKSRQ 520

Query: 581 -------------------------ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
                                     +  KS+FLA +SHE+RTPL AIIGFS+++    F
Sbjct: 521 TLEMQAQQLVELAEKYAQEKTNAENANRAKSEFLANISHELRTPLNAIIGFSDIMDRGMF 580

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
           GP+G+ RY EY   I  SG  +L+++ND+LD+SKIE+G+M +  +P+ ++  V EA  ++
Sbjct: 581 GPIGSERYAEYCRDIHESGTYLLNVINDILDMSKIEAGRMEMTVKPLGVEAVVEEAGRII 640

Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
           +  A EK I +       +  + AD R++KQ+ LN+LSN + FTP  G + +S  H +  
Sbjct: 641 RAPAQEKAIEVTCEVEPGL-AVAADRRALKQVLLNLLSNGVKFTPEKGTVRLSV-HRAGG 698

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
                + DTG+G+   ++++  +PF Q+ N      +G+GLGL +A+++V+   G   I 
Sbjct: 699 LARFEIADTGIGIRKADVDRLAQPFVQVENQFTKTHKGSGLGLAIARSLVELQGGTLTIA 758

Query: 796 STPAKGTLIEIIFPL 810
           S P +GT +    PL
Sbjct: 759 SVPGQGTRVAFTLPL 773



 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/250 (10%), Positives = 59/250 (23%), Gaps = 12/250 (4%)

Query: 85  FTWNIDAHGYLKEISEELPKTIG-NYAFKMIG-MRLCDVSDILHIDPNNHIGDLLKRQNT 142
           F W++ A G +   S  L   +G      ++G   + D++    ID       LL+   T
Sbjct: 272 FDWDL-ARGRI-FWSASLYDLLGREPKDDILGFAEIADLTHPDDIDLYRLAETLLETGQT 329

Query: 143 WYGKT-TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
              +   +   +G+  +V +           R      G  I       ++     +  D
Sbjct: 330 TVDRMFRMRHADGS--WVWLRARGEVQTDPGRAEPHLIGICI--DVTEQHELAEQSRTAD 385

Query: 202 KKFSHLHEIKKGHSSVEKEKYDI-FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
            +     E       +     ++     +      +  +       YA      +     
Sbjct: 386 LRLRDAIETISEAFVLWNADNELVICNSNYQSLHNLPEQAVRPGAPYAEVMAAARNSHIT 445

Query: 261 LLT--SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
                           +     +    +      ++    S                D  
Sbjct: 446 TSPLHGGTPGAGANASYEAQLDDGRWLQISERRTKDGGFVSVGTDITTLKRHEERLLDSE 505

Query: 319 ENLTPETVDK 328
             L     D 
Sbjct: 506 RRLMATVSDL 515


>gi|126658583|ref|ZP_01729730.1| Signal transduction histidine kinase [Cyanothece sp. CCY0110]
 gi|126620170|gb|EAZ90892.1| Signal transduction histidine kinase [Cyanothece sp. CCY0110]
          Length = 1195

 Score =  336 bits (862), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 93/369 (25%), Positives = 170/369 (46%), Gaps = 23/369 (6%)

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTE 515
           +  T+DGI   +    ++  +    K+ GY  E +      ++  +  +   +    +  
Sbjct: 583 VSGTNDGIWDWDLRNDMVYYSPVWMKILGYEHESLPHVLSTWSDHIHPDDLELAIQDVKN 642

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKL 571
            L          I          + +    K +            T+ DI+E K+ +  L
Sbjct: 643 HL-QGNTTIYTNIHRIQHHNGHYIWIEAKGKCIRDQQGKPYRLVGTITDITERKKYQEAL 701

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
             AK+ AE  ++ KS+FLA +SHEIRTP+ AI+GF +++       + + R   Y   I 
Sbjct: 702 EKAKETAEIANNAKSEFLANMSHEIRTPMNAILGFCDLL----DKKVNDERSRRYLESIT 757

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
            +G ++L ++ND+LD+SKIE+GK+ + ++ + L E + E   +    A +K++ +     
Sbjct: 758 SAGKMLLSLINDILDLSKIEAGKIKIIYKSIQLKEVIFEIKQMFAETAKQKQLELLIDID 817

Query: 692 NNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHT----SNEE------VILR 740
           +N+P ++  D   +KQI  N++ NA+ FT  G  I I+   T     N +      + + 
Sbjct: 818 DNVPDVIIFDEVRLKQILFNLVGNALKFTEEG-YIKITLKSTLFKSDNHQKFSHCSLKIS 876

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           + DTG+G+   + E+    F Q       +  GTGLGL + K + +   G   + S   K
Sbjct: 877 IEDTGIGIAEDQQERIFDVFTQSEGQSSRKYGGTGLGLTITKRLTEILEGTIDLDSQLGK 936

Query: 801 GTLIEIIFP 809
           G++  + FP
Sbjct: 937 GSIFILSFP 945



 Score = 43.5 bits (101), Expect = 0.16,   Method: Composition-based stats.
 Identities = 14/147 (9%), Positives = 37/147 (25%), Gaps = 8/147 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKM--IGMRLCDVSDILHID--PNNHIGDLLKRQN 141
            W+ D    +   S    K +G     +  +     D      ++    +    L     
Sbjct: 590 IWDWDLRNDMVYYSPVWMKILGYEHESLPHVLSTWSDHIHPDDLELAIQDVKNHLQGNTT 649

Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
            +     +    G   Y+ I+     I  +  +   +R  G +         +   ++  
Sbjct: 650 IYTNIHRIQHHNGH--YIWIEAKGKCIRDQQGKP--YRLVGTITDITERKKYQEALEKAK 705

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQ 228
           +     +  K    +    +       
Sbjct: 706 ETAEIANNAKSEFLANMSHEIRTPMNA 732



 Score = 40.4 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/124 (9%), Positives = 38/124 (30%), Gaps = 5/124 (4%)

Query: 330 PIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388
               + +   N + Y +P ++ +  Y    + E    + +        D+  +    +  
Sbjct: 587 NDGIWDWDLRNDMVYYSPVWMKILGY----EHESLPHVLSTWSDHIHPDDLELAIQDVKN 642

Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
             +        +H IQ +  + + +        +Q  +     G   +  + +  +  +E
Sbjct: 643 HLQGNTTIYTNIHRIQHHNGHYIWIEAKGKCIRDQQGKPYRLVGTITDITERKKYQEALE 702

Query: 449 IEVM 452
               
Sbjct: 703 KAKE 706


>gi|116628743|ref|YP_813915.1| Signal transduction histidine kinase [Lactobacillus gasseri ATCC
           33323]
 gi|238852957|ref|ZP_04643356.1| sensor protein YycG [Lactobacillus gasseri 202-4]
 gi|282852391|ref|ZP_06261733.1| PAS domain S-box [Lactobacillus gasseri 224-1]
 gi|116094325|gb|ABJ59477.1| PAS/PAC sensor signal transduction histidine kinase [Lactobacillus
           gasseri ATCC 33323]
 gi|238834407|gb|EEQ26645.1| sensor protein YycG [Lactobacillus gasseri 202-4]
 gi|282556133|gb|EFB61753.1| PAS domain S-box [Lactobacillus gasseri 224-1]
          Length = 621

 Score =  336 bits (862), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 87/421 (20%), Positives = 178/421 (42%), Gaps = 35/421 (8%)

Query: 397 SARLHTIQWN-RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
             R   ++    + S  +     ++  Q  E      +  E           + E  +L 
Sbjct: 214 EMRKQALRVANGDYSGHVRVYAQDELGQLAEAFNTLSVRIERTQEIS-----DSERRRLD 268

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           ++L   +DG+   +R G I   N       G   +D++ KP T  L     +     + +
Sbjct: 269 NVLTHMTDGVIATDRHGNITIINETALDFLGKTEKDVIGKPITNLLGLKDVT-----IQD 323

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575
           +LS      +        +     +  +I +   F S     +HDI++ ++ + +     
Sbjct: 324 LLSTQQELVVRVNDNTRDEMILHANFSLIQRVTGFVSGLVCVLHDITQQQKNEREQQ--- 380

Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
                       F++ VSHE+RTPLT++  + E + +  +          + + I     
Sbjct: 381 -----------QFVSNVSHELRTPLTSLRAYVEALNDGAWKDPNIAPQ--FLHVIQDETE 427

Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV-------QLYANEKRILIRT 688
            ++ ++NDLL +S+++ G   +  E V+L++ V+  ++             ++K+  I+ 
Sbjct: 428 RMIRMINDLLSLSRMDRGVARMDLEWVNLNDFVNHVLNRFDMMLKSDSDKMHKKKYTIKR 487

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748
            F +    +  D   + Q+  NI++NAI ++P GG I +     + + VIL + D G+G+
Sbjct: 488 EFPHQALWVEIDTDKMMQVIDNIMNNAIKYSPDGGVITVRL-LQAQKHVILSISDQGLGI 546

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
              +L K    F ++  ++  +  GTGLGL ++K +V+A+ G+ +  S    G+   I  
Sbjct: 547 PRKDLNKIFDRFYRVDKARSRKQGGTGLGLAISKEIVEAHHGRIWADSAEGAGSTFYISL 606

Query: 809 P 809
           P
Sbjct: 607 P 607


>gi|56750207|ref|YP_170908.1| phytochrome [Synechococcus elongatus PCC 6301]
 gi|56685166|dbj|BAD78388.1| phytochrome [Synechococcus elongatus PCC 6301]
          Length = 1165

 Score =  336 bits (862), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 101/731 (13%), Positives = 228/731 (31%), Gaps = 51/731 (6%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            +D  G L   +    + +     ++    L  +   L +                     
Sbjct: 475  VDERGKLAFANPTAQEWLAIDKSELSQQSLDQLL-PLDLTA------------------- 514

Query: 149  LWPIEGTNLYVPIDLAALPIYSRNREFSG----FRGFGIVHVNRVDNDPRALGKRLDKKF 204
             W   G      + L    +    R   G         ++H            +  D+ F
Sbjct: 515  -WNQGGVGNQGELKLKGRILQYEARPLVGPVAERGWVLVLHDVTAQRQVDQAMRERDQFF 573

Query: 205  SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
            S   E+      +      +    +          V           D  +         
Sbjct: 574  SLSLEMFC-MVDLRGRFIQVNPAFAATLRYSTAELVGRPYLELVDLGDRSQIATTIRRLK 632

Query: 265  EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
                + +          +    Q    L ++              ++     +   L   
Sbjct: 633  AGLLIHDLVIRVWDKAGELHWLQISAALGDDRVIYCVARDVTEQRAIQEQILQQNLLLRM 692

Query: 325  TVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
                  +  + V         +P    L  +   D          L   P        K 
Sbjct: 693  AGQTAKLGGWSVELPSREVIWSPETFSLLGFTDED---EPDLEEALSLYPPAERALVTKA 749

Query: 384  VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
            +               +H         L          ++    +  +G   +  D +  
Sbjct: 750  LEDCIQQGISFDFDVAVHNTS---GFLLDARVTGQAVRDETGAIVRISGAFQDVSDRKRA 806

Query: 444  KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            +R+ +    +L + LE+ +DG   ++        N+  ++  G  VE+ L +        
Sbjct: 807  QREAQRLADRLRTTLESITDGFYTLDENWRFSYLNQEGAQQLGVNVEETLGQMVWTAFPG 866

Query: 504  NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
            +  S + H   + ++       E          +   +             ++   D+SE
Sbjct: 867  SYESELGHIYRQAIATGEAAHFE---TYYEPFGRWFEVHAYPS----EDGLAVYFRDVSE 919

Query: 564  WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             +Q +  L    +  E+ +    +F    SH+++ PL  I  FS+ +  +      +   
Sbjct: 920  RRQTEQNLRITLRELERSNQELQEFAFVASHDLQEPLRKIQAFSDRLIAR--TSNLDDES 977

Query: 624  IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
             +Y   +  +   +  ++ DLL+ S++ +  + L  +P+SLD+ + + +  ++   ++  
Sbjct: 978  QDYLRRMASAAGRMQTLIIDLLNYSRVNTRGLPL--QPLSLDQVLDDVLVDMEASLDQAS 1035

Query: 684  ILIRTSFANNIPRILADLRSVKQIALNILSNAIHF--TPSGGQIIISTTHTSNEEVILRV 741
             ++       +P I  D    +Q+  N+LSNA+ F    +   I I +  T   ++ L +
Sbjct: 1036 AIVERQ---PLPTIQGDAGQFRQVFQNLLSNALKFQSADNQPLIQIYSELTEAGQLRLCI 1092

Query: 742  RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
             D G+G     L++   PF ++ +  +    GTG+GL + K +++ +       S P +G
Sbjct: 1093 ADNGIGFDEKYLDRIFNPFQRLHS--RDAYAGTGIGLAIVKKIIERHGATITAKSIPGQG 1150

Query: 802  TLIEIIFPLYD 812
            ++  I FP+ +
Sbjct: 1151 SVFFITFPVTE 1161



 Score = 83.5 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/216 (12%), Positives = 71/216 (32%), Gaps = 7/216 (3%)

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
            +   L    R+C +     H  Q     ++   F      +Q  + +    +       
Sbjct: 75  DRDTALIHGLRSCWSFPLIAHNGQVQGTLAVYQPFPQTPSEDQLQQCLTVAQLAAIAFAR 134

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
            +++++++    +  S+     D +   + +GI  S N A  ++     + I+ K F+  
Sbjct: 135 SLDRQQLQDSEQRFRSLFTFNPDAVYSFDLQGIYQSMNSAGFEILDRQADQIIGKHFSDV 194

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLT 557
           +          +  +    + +         + +  +L  L +    +  ++        
Sbjct: 195 VISEDLEKCQQHFDQACKGEAQ---HYEIRINGRNGQLFYLDVSKFPIVVNNKIVGVFGI 251

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
             DI++ KQ    L  A   + K++      L   +
Sbjct: 252 AKDITQRKQITADLQQALMQSNKQTEQLRR-LGNAA 286



 Score = 76.2 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 52/545 (9%), Positives = 129/545 (23%), Gaps = 98/545 (17%)

Query: 48  SFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIG 107
                 F           +     + F F+P        ++ D  G  + ++    + + 
Sbjct: 126 QLAAIAFARSLDRQQLQDSEQRFRSLFTFNPDA-----VYSFDLQGIYQSMNSAGFEILD 180

Query: 108 NYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPIEGT-NLYVPIDLAA 165
             A ++IG    DV     ++    H     K +           I G       +D++ 
Sbjct: 181 RQADQIIGKHFSDVVISEDLEKCQQHFDQACKGEAQH----YEIRINGRNGQLFYLDVSK 236

Query: 166 LPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF 225
            PI   N +  G   FGI          + +   L +     ++  +    +        
Sbjct: 237 FPIV-VNNKIVGV--FGIAKDIT---QRKQITADLQQALMQSNKQTEQLRRLGNAAIATA 290

Query: 226 SQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTK 285
             Q          ++                    L   ++ S        +     +  
Sbjct: 291 ELQDH-------QELVKYLVEQVRLTIRAHQAVISLTRCDDWSQSINAISLSDKYAAWKN 343

Query: 286 KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYAN 345
                T +       E                      +  DK P               
Sbjct: 344 YDELSTGEGIYTLICETNQPLVLTQEELEKHPRWRGFGDQADKHP--------------- 388

Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405
                                  L       +   +  + L   +               
Sbjct: 389 ------------------PMRGWLAVPLFDPNGRNLGVLQLSDKEEGEFD---------- 420

Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465
           + + ++A  F     A                 +    +++++ ++    +I +  ++G+
Sbjct: 421 DDDLAIAQQFAQMTVA--------VLENNRLLNEVLTAEQQLKEQLSFNSTITDCMAEGL 472

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
             ++  G +   N    +       ++ ++     L  +        LT      +    
Sbjct: 473 LAVDERGKLAFANPTAQEWLAIDKSELSQQSLDQLLPLD--------LTAWNQGGVGNQG 524

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
           E    G   + +   L   +        + L +HD++  +Q            ++    +
Sbjct: 525 ELKLKGRILQYEARPLVGPV----AERGWVLVLHDVTAQRQV-----------DQAMRER 569

Query: 586 SDFLA 590
             F +
Sbjct: 570 DQFFS 574



 Score = 41.6 bits (96), Expect = 0.63,   Method: Composition-based stats.
 Identities = 18/246 (7%), Positives = 58/246 (23%), Gaps = 17/246 (6%)

Query: 87   WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI-GDLLKRQNTWYG 145
            + +D +     +++E  + +G    + +G  +       +     HI    +      + 
Sbjct: 829  YTLDENWRFSYLNQEGAQQLGVNVEETLGQMVWTAFPGSYESELGHIYRQAIATGEAAHF 888

Query: 146  KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI-VHVNRVDNDPRALGK-RLDKK 203
            +T   P          ++ A P            G  +               +  L + 
Sbjct: 889  ETYYEPFG-----RWFEVHAYPSED---------GLAVYFRDVSERRQTEQNLRITLREL 934

Query: 204  FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
                 E+++       +  +   +        +    +   E   +   +          
Sbjct: 935  ERSNQELQEFAFVASHDLQEPLRKIQAFSDRLIARTSNLDDESQDYLRRMASAAGRMQTL 994

Query: 264  SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
              +     + +   + L   +  Q    +  + + S +  S                   
Sbjct: 995  IIDLLNYSRVNTRGLPLQPLSLDQVLDDVLVDMEASLDQASAIVERQPLPTIQGDAGQFR 1054

Query: 324  ETVDKC 329
            +     
Sbjct: 1055 QVFQNL 1060


>gi|288959555|ref|YP_003449896.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
 gi|288911863|dbj|BAI73352.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
          Length = 1284

 Score =  336 bits (862), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 113/630 (17%), Positives = 221/630 (35%), Gaps = 21/630 (3%)

Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254
           A  +  +  ++         +       +   +            +++L      + D  
Sbjct: 186 AESRAAEGPWAMELRSGLPDAEAADRNREALERWRRDLTAAATTLLAALRAEDDGQLDRF 245

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
           + +    L +   +L          L    ++        +   +          ++   
Sbjct: 246 QADTRGALDNAAEALSLLPADRAARLEPLQRELAEQAFGRSPLFALRTTELSLQRAIKRS 305

Query: 315 FDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
               + ++ + V      F             +   L        +     LS L  A  
Sbjct: 306 AARNQAVSDQLVGIVSDYFLAVEQD--VAHRSAEFELVIRDGERAVIAMALLSILGAAAI 363

Query: 375 LSDNNAIKPVMLYRSDRTCIAAS-ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
            +  +      L R      A   A    I      + A    P    ++  E       
Sbjct: 364 FAYIHRNVVARLRRLRSAMRAVETAEPAAIPDLDLPAAA----PAGNRDEIGEMARALAY 419

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
                  R  +  +     +L +ILE +  G++I   +G I   N   ++L G P ED +
Sbjct: 420 F--VTAIRAREGALADSERRLRTILEQSPVGVSIGRADGTIAFANARAAELAGQPQEDFV 477

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL--PFS 551
                + L   +         +  S  +    E        +   +     +++      
Sbjct: 478 GSRHALALPGTSGDPAGDEGRDADSGGVL-VREAELAVDRPDGSRVWALQTLQRTSFEGE 536

Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
                  +DI+  K  +  L  AK+ AE  +  K++FLA +SHEIRTP+  ++G  E++ 
Sbjct: 537 PAVLAWSYDITARKLAEEALRAAKEQAEIAARSKAEFLATMSHEIRTPMNGVLGMLELMA 596

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
                   +       + +  SG  +L I++D+LD+SKIE+GK+ L    +S  + V   
Sbjct: 597 LTPL----DEEQRTLVSTMRDSGAALLRIIDDILDLSKIEAGKLELEELDLSPADLVEGV 652

Query: 672 ISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI-IIST 729
             L+   A++K + +      ++P  +  D   ++QI  N+  NAI FT  G  +  +  
Sbjct: 653 ADLLAPQAHQKGLALICDIDGSVPERLRGDSGRLRQILFNLTGNAIKFTDRGRVVLRVQA 712

Query: 730 THTSNE---EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
             T++     + + V D+G+G+      +  +PF Q  +S   R  GTGLGL +   +V+
Sbjct: 713 AATADPTLIRLTVAVEDSGIGIGPEGQARLFQPFSQADSSTTRRFGGTGLGLAICTRLVE 772

Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
              G+  + S P +G++      L     P
Sbjct: 773 RMGGRIGVESVPGRGSIFRFTVELARPPEP 802


>gi|331013207|gb|EGH93263.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. tabaci ATCC 11528]
          Length = 641

 Score =  336 bits (862), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 111/426 (26%), Positives = 199/426 (46%), Gaps = 18/426 (4%)

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
           AR+H +Q N +       +  +   +         +          +R +     +L  I
Sbjct: 215 ARVHQVQRNAQRLALGHPLLPQPPEKDEIGQLGTRLVEAGQLLAERERALRDNEERLRLI 274

Query: 458 LEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           +E   D GI  ++R G + + N    ++ GY  ++I+ K F+VF               +
Sbjct: 275 IEGVKDYGIFALDRNGYVTTWNAGAERIKGYTEQEIIGKHFSVFYLPEECPQHPEM--AL 332

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNKLS 572
               +     + +    K+       ++I            +S    DIS+ +  +  L 
Sbjct: 333 REATVNGRYTEESWRRRKDGSRFWASVVITAQYDGNDELRGFSKITRDISDRRVAEIALG 392

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
            A++ AE+ S  KS+FL+R+SHE+RTPL +I+GF++++                  +I R
Sbjct: 393 TAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLL-----DMDSPASQRPQIGHILR 447

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT--SF 690
           +G  +L ++N++LDI++IE+G ++L  EPVSL   + EA+ LV   A +  I ++     
Sbjct: 448 AGQHLLKLINEVLDIARIEAGHVSLSLEPVSLSSVLEEALVLVSPMAADANIELKALPQL 507

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
            + +  ++AD + + Q+ LN+LSNAI +    GQ+ I    +    V + V DTG G+  
Sbjct: 508 PDKLG-VVADRQRLIQVLLNLLSNAIKYNRPEGQVRIEVEQSDE-RVTVSVIDTGYGIAP 565

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             + +  KPF ++        EGTGLGL L+K+M++   G   + +TPA+G    +  PL
Sbjct: 566 ERIGQLFKPFERLDA--NPSVEGTGLGLALSKSMLEMMHGTLSVQNTPAEGCRFILELPL 623

Query: 811 YDTSHP 816
              + P
Sbjct: 624 VLVNAP 629



 Score = 54.6 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 24/258 (9%), Positives = 68/258 (26%), Gaps = 18/258 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN-TWY 144
            + +D +GY+   +    +  G    ++IG              +  +       N  + 
Sbjct: 283 IFALDRNGYVTTWNAGAERIKGYTEQEIIGKHFSVFYLPEECPQHPEMALREATVNGRYT 342

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGF---------RGFGIVHVNRVDNDPRA 195
            ++     +G+  +  + + A   Y  N E  GF         R    + +     +   
Sbjct: 343 EESWRRRKDGSRFWASVVITAQ--YDGNDELRGFSKITRDISDRRVAEIALGTAREEAER 400

Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255
             +   +  S +    +   +       +    SP         +    ++      + +
Sbjct: 401 ASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSPASQRPQIGHILRAGQHLLKL--INE 458

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
                 + +   SL  +    +  L     +         +  + E  +    P      
Sbjct: 459 VLDIARIEAGHVSLSLEPVSLSSVLE----EALVLVSPMAADANIELKALPQLPDKLGVV 514

Query: 316 DEGENLTPETVDKCPIPF 333
            + + L    ++      
Sbjct: 515 ADRQRLIQVLLNLLSNAI 532


>gi|259047883|ref|ZP_05738284.1| sensory box histidine kinase VicK [Granulicatella adiacens ATCC
           49175]
 gi|259035560|gb|EEW36815.1| sensory box histidine kinase VicK [Granulicatella adiacens ATCC
           49175]
          Length = 618

 Score =  336 bits (862), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 86/376 (22%), Positives = 166/376 (44%), Gaps = 31/376 (8%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +  +   E E  +L S+L   SDG+   +R G I+  N A   +     E I+  P    
Sbjct: 254 KEAQEGTEAERQRLDSVLRHMSDGVIATDRRGRIVIINAAALDVLNLRNERIIGTPLLEV 313

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTM 558
           L  +        L              IT+    EE ++   I + +      S     +
Sbjct: 314 LRLDHSVSFRDLLESQEER-------MITIEEDGEETIVQCEISVIQRESGFISGLVCVL 366

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            D++E ++                  + +F++ VSHE+RTPLT+I  ++E + +  +   
Sbjct: 367 TDVTEQEKI--------------DRERRNFVSNVSHELRTPLTSIKSYTEALVDGAW--E 410

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV--- 675
                 E+ N I+   + ++ ++ DLL++S+++  ++ L  E V+++E V   ++     
Sbjct: 411 NKEIAPEFLNVIETETDRMMRMITDLLNLSRMDQNRLELDKEFVNMNELVKHIVNRFDMV 470

Query: 676 --QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
                  EK   I T        +  D   + Q+  NI++NAI ++P GG+II+     +
Sbjct: 471 LQSDQYREKNYRILTDITQRNLWVEIDQDKMTQVLDNIINNAIKYSPDGGRIIVRL-MET 529

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
           + ++I+ V D G+G+   ++      F ++  ++     G+GLGL ++K +V  + GK +
Sbjct: 530 HTDLIVSVSDEGLGVPRKDIPHLFDRFYRVDKARSRAMGGSGLGLAISKEVVQLHGGKIW 589

Query: 794 IFSTPAKGTLIEIIFP 809
           + S   KG+   I  P
Sbjct: 590 VNSIENKGSTFFISLP 605



 Score = 43.1 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 36/301 (11%), Positives = 88/301 (29%), Gaps = 19/301 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            D  G +  I+      +     ++IG  L +V   L +D +    DLL+ Q     +  
Sbjct: 281 TDRRGRIVIINAAALDVLNLRNERIIGTPLLEV---LRLDHSVSFRDLLESQE---ERMI 334

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +G    V  +++   I   +   SG     ++              R  + F    
Sbjct: 335 TIEEDGEETIVQCEISV--IQRESGFISGL--VCVLTDVTEQ----EKIDRERRNFVSNV 386

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
             +        + Y          +  +  +  ++ E    +   + T+   L   +++ 
Sbjct: 387 SHELRTPLTSIKSYTEALVDGAWENKEIAPEFLNVIETETDRMMRMITDLLNLSRMDQNR 446

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF-DEGENLTPETVD 327
           L   ++F  +N         F  +  + +   +        +    + +  ++   + +D
Sbjct: 447 LELDKEFVNMNELVKHIVNRFDMVLQSDQYREKNYRILTDITQRNLWVEIDQDKMTQVLD 506

Query: 328 KCPIPFFVY--SHGN-LFYANPSFLLLTKYKSVDDIE-IAGGLSTLLDAPKLSDNNAIKP 383
                   Y    G  +     +   L    S + +      +  L D     D    + 
Sbjct: 507 NIINNAIKYSPDGGRIIVRLMETHTDLIVSVSDEGLGVPRKDIPHLFDRFYRVDKARSRA 566

Query: 384 V 384
           +
Sbjct: 567 M 567


>gi|300088232|ref|YP_003758754.1| PAS/PAC sensor hybrid histidine kinase [Dehalogenimonas
            lykanthroporepellens BL-DC-9]
 gi|299527965|gb|ADJ26433.1| PAS/PAC sensor hybrid histidine kinase [Dehalogenimonas
            lykanthroporepellens BL-DC-9]
          Length = 1149

 Score =  336 bits (862), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 103/748 (13%), Positives = 235/748 (31%), Gaps = 55/748 (7%)

Query: 91   AHGYLKEISEELPKTIGNYAFKMIG-MRLCDVSDILHIDPNNHIGDLLK-------RQNT 142
              G +  ++    +  G    ++       +            +  ++         +  
Sbjct: 297  GDGQVTYMNSRFEEIYGWPKEEITDIATFFEKVYPDAGYREAIVSRIMADIESSDPARMH 356

Query: 143  WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
            W          G  +   +  A +PI  +            V         R        
Sbjct: 357  WEDIEITRKDGGKRV---VAAANIPIPDQG------VMVSTVRDETEAVSARRELNHTLN 407

Query: 203  KFSHLHEIKKGHSSVEKEKYDIFSQQSP--PPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
               ++ E  +   +V     +           +      +     Y    D   K     
Sbjct: 408  LMRYIIEHDQAGIAVHDRNLNYIYVSQRYLDEYNLGPRNIIGRHHYDVFPDLPQKWRDVH 467

Query: 261  LLT-SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL----SAYF 315
                + E    ++++F   +      +                + +    +         
Sbjct: 468  QRALAGEICRADRDEFVREDGTVEWTRWECRPWFEKDGSVGGIIVYTEVITEQINRERAL 527

Query: 316  DEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
             E +    +  +      + Y        Y       +  Y+  +  ++      +    
Sbjct: 528  AESKEKYRQLAENTESISWEYDIEQDRWTYLASQVGRILGYRPEEFTDLQFWADHI---- 583

Query: 374  KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
               ++    P     + R     S     ++ + ++      +  E+A   P  +   GI
Sbjct: 584  -HPEDRDWAPKYCLTAARAGRDHSLEYRFLKKDGKSVWLRNIVSVEQAGCQPVKLR--GI 640

Query: 434  EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
              +  + +  + +      +  +  ++ +D +A+++    I   N+A +++ G    ++L
Sbjct: 641  MIDITERKQAEEEALRSAAEWLATFDSITDMVALVDTGHRITRVNQAFARVLGRKPGELL 700

Query: 494  RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS- 552
             K     +        +      L+    +T E       K    +            + 
Sbjct: 701  GKRCYEVIHGLKGPHPDCPYARALTTRQVETSEY---FDEKLGLWVEATASPIMDVDGNM 757

Query: 553  -CYSLTMHDISEWKQEKNKLSHAKKIAEKESS--HKSDFLARVSHEIRTPLTAIIGFSEV 609
                  + D+S  K+ +      ++ AE  S      +  A ++HEI  PLT +IGFSE+
Sbjct: 758  VGSVHIIKDVSGRKRAEENERLLREKAEMSSRLAAVGEMAAGIAHEINNPLTGVIGFSEL 817

Query: 610  IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
            +  +   P       E  + I+     V DIV  +L  ++    +       V++ + + 
Sbjct: 818  LMTRPDVP---DDMKEDLHIINEGSQRVKDIVRRMLTFAR----QSKPVKSAVNIIDVLE 870

Query: 670  EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA---IHFTPSGGQII 726
              I + +       I I   +A +I  ++AD   ++Q+ LNI+ NA   +      G ++
Sbjct: 871  NTIEMRRYVLETSNISIVRDYARDITEVVADAGQLQQVFLNIIVNAEYAMKKAHDKGVLV 930

Query: 727  ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
            + T  +    + + + D G GM++    K  +PF    +     GEGTGLGL L+  ++ 
Sbjct: 931  VKTEKSD-GHIRVLITDDGPGMSDEVKSKLFQPFFTTKDP----GEGTGLGLALSMGIIK 985

Query: 787  ANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
             + G   + +   KGT   +  P+    
Sbjct: 986  EHGGSISVKTVVGKGTTFIVELPMTPVE 1013



 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 47/519 (9%), Positives = 139/519 (26%), Gaps = 36/519 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +DA G + E+++    ++G    ++IG    +  +    +         K +     +  
Sbjct: 33  LDAGGNIIEVNQAWLDSLGYTRDEVIGHWFGEFLNPESAEKFRLTFPRFKEKGIVGTEFC 92

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +G+ L V + +     Y  +  F   +   ++             ++  +K+  L 
Sbjct: 93  FKRKDGS-LRVEV-VDGRIAYDIDGNFQ--QTHCVLQDVTEARQAETAMQQSRQKYQALF 148

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES- 267
           E     + V +   +         +      +    + +                +    
Sbjct: 149 ESSGDAAFVHQPTPEGLPGVFLEVNQTACELLGYTKDEFLKLGPRDIVVWEKFGVTPPDI 208

Query: 268 --------SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
                    +  +  F   + ++   +          +     L+     +     +E  
Sbjct: 209 MKILEAVKKVTRESAFRHKDGHEIPVEVVIHRF--ELQGKPAVLTLARDITKRKKAEEEL 266

Query: 320 NL-----------TPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
            L               +D+ PI   + +   G + Y N  F  +  +   +  +IA   
Sbjct: 267 KLQADELKNRNLFIQTIIDQLPIGLAINNTGDGQVTYMNSRFEEIYGWPKEEITDIATFF 326

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
             +       +    + +M                 I         +        +Q   
Sbjct: 327 EKVYPDAGYREAIVSR-IMADIESSDPARMHWEDIEITRKDGGKRVVAAANIPIPDQGV- 384

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
                    ++ +    +R++   +  +  I+E    GIA+ +R    +  ++     + 
Sbjct: 385 ---MVSTVRDETEAVSARRELNHTLNLMRYIIEHDQAGIAVHDRNLNYIYVSQRYLDEYN 441

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
               +I+ +        + P          L+ ++ +      +      +         
Sbjct: 442 LGPRNIIGRHHYDVF-PDLPQKWRDVHQRALAGEICRADRDEFVREDGTVEWTRWECRPW 500

Query: 547 KLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
                      +    I+E    +  L+ +K+   + + 
Sbjct: 501 FEKDGSVGGIIVYTEVITEQINRERALAESKEKYRQLAE 539



 Score =  107 bits (267), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 34/285 (11%), Positives = 89/285 (31%), Gaps = 18/285 (6%)

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364
           R      A F + E    +   + P  +  + + GN+   N ++L    Y   + I    
Sbjct: 3   RKSEEAEARFQQLEERYKQLFQQHPSGYHSLDAGGNIIEVNQAWLDSLGYTRDEVIGHWF 62

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
           G       P+ ++   +                      +    +            +  
Sbjct: 63  GE---FLNPESAEKFRLTFPRFKEK-----GIVGTEFCFKRKDGSLRVEVVDGRIAYDID 114

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-----GIILSTNR 479
                 + +  +  + R  +  M+    +  ++ E++ D   +         G+ L  N+
Sbjct: 115 GNFQQTHCVLQDVTEARQAETAMQQSRQKYQALFESSGDAAFVHQPTPEGLPGVFLEVNQ 174

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
              +L GY  ++ L+      +      V    + +IL     + + + +    K+   +
Sbjct: 175 TACELLGYTKDEFLKLGPRDIVVWEKFGVTPPDIMKILE--AVKKVTRESAFRHKDGHEI 232

Query: 540 SLRIIIKK--LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES 582
            + ++I +  L           DI++ K+ + +L       +  +
Sbjct: 233 PVEVVIHRFELQGKPAVLTLARDITKRKKAEEELKLQADELKNRN 277



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 17/155 (10%), Positives = 51/155 (32%), Gaps = 11/155 (7%)

Query: 440 TRINKRKMEIE--VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
            +  + +   +    +   + +    G   ++  G I+  N+A     GY  ++++   F
Sbjct: 3   RKSEEAEARFQQLEERYKQLFQQHPSGYHSLDAGGNIIEVNQAWLDSLGYTRDEVIGHWF 62

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-----S 552
             FL   +               +  T         K+   L + ++  ++ +       
Sbjct: 63  GEFLNPESAEKFRLTFPRFKEKGIVGT---EFCFKRKDGS-LRVEVVDGRIAYDIDGNFQ 118

Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
                + D++E +Q +  +  +++  +       D
Sbjct: 119 QTHCVLQDVTEARQAETAMQQSRQKYQALFESSGD 153



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/164 (10%), Positives = 47/164 (28%), Gaps = 13/164 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL-HIDPNNHIGDLLKRQNTWYGKT 147
           +D    +  +++   + +G    +++G R  +V   L    P+      L  +     + 
Sbjct: 675 VDTGHRITRVNQAFARVLGRKPGELLGKRCYEVIHGLKGPHPDCPYARALTTRQVETSEY 734

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                    L + ++  A PI   +    G     I+                ++     
Sbjct: 735 F-----DEKLGLWVEATASPIMDVDGNMVG--SVHIIKDVSGRKRAEE----NERLLREK 783

Query: 208 HEIKKGHSSVEK-EKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK 250
            E+    ++V +          +P   +   +++          
Sbjct: 784 AEMSSRLAAVGEMAAGIAHEINNPLTGVIGFSELLMTRPDVPDD 827


>gi|37520203|ref|NP_923580.1| two-component hybrid sensor and regulator [Gloeobacter violaceus
           PCC 7421]
 gi|35211196|dbj|BAC88575.1| two-component hybrid sensor and regulator [Gloeobacter violaceus
           PCC 7421]
          Length = 672

 Score =  336 bits (862), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 94/382 (24%), Positives = 173/382 (45%), Gaps = 16/382 (4%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           R++     +L   L+  SD I I++ EG +L  NR   +   YP +D+ +      +   
Sbjct: 149 RQLRSSEQRLQDFLDNASDLIEIVSPEGRLLYVNRTWRETLAYPADDLEKMTCFDVVAPA 208

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDI 561
              ++   L  +      + L           + +++   +                 DI
Sbjct: 209 DRPLLAEALERVQQSQRSERL--EVAFLAMGGREIAVEGSLNCQFDKGVPQAIRCIFRDI 266

Query: 562 SEWKQEKNKLSHA------KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
           +E +Q +            ++ AE+ S  K +FLA VSHE+RTPL +I+G++++++ +R 
Sbjct: 267 TERRQAEQVRVEILREQVARQQAEEASRMKDEFLAMVSHELRTPLNSILGWAQLLRARR- 325

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
             +           I+R+  +   ++ DLLDIS++ +G+M L  +P+ L   ++ A+  V
Sbjct: 326 --IDEKAATGALESIERNARMQNRLIEDLLDISRVVTGQMRLELQPLELSGVIASAVEAV 383

Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
           Q  A  K+I +R      +  +L D+  + QIA N+L+NA+ FTP GG + +        
Sbjct: 384 QPAAAVKQIQLRCRIDAAVGPVLGDVDRLHQIAWNLLANAVKFTPQGGTVEVDLA-QGEI 442

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
              L VRD G+G++   L++  + F Q  ++      G GLGL + + +V+ + G     
Sbjct: 443 HAQLVVRDNGIGISPAFLDQIFERFRQADSTSTRVHGGLGLGLSIVRHLVELHGGTAAAE 502

Query: 796 ST-PAKGTLIEIIFPLYDTSHP 816
           S    +G    +  PL     P
Sbjct: 503 SAGKGQGATFTVRLPLLADGTP 524



 Score = 46.2 bits (108), Expect = 0.024,   Method: Composition-based stats.
 Identities = 46/473 (9%), Positives = 114/473 (24%), Gaps = 35/473 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR----QNTWY 144
           +   G L  ++    +T+   A  +  M   DV           + + L+R    Q +  
Sbjct: 172 VSPEGRLLYVNRTWRETLAYPADDLEKMTCFDVVAPAD---RPLLAEALERVQQSQRSER 228

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            +     + G  + V   L         +         I            +  R++   
Sbjct: 229 LEVAFLAMGGREIAVEGSLNCQFDKGVPQAIR-----CIFRDITERRQAEQV--RVEILR 281

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
             +   +   +S  K+++           L      + L       +         +  +
Sbjct: 282 EQVARQQAEEASRMKDEFLAMVSHELRTPLNSILGWAQLLRARRIDEKAATGALESIERN 341

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
                   ED   I+     + +        S      +      +          +   
Sbjct: 342 ARMQNRLIEDLLDISRVVTGQMRLELQPLELSGVIASAVEAVQPAAAVKQIQLRCRIDAA 401

Query: 325 TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
                     ++       AN             D+      + L+        +     
Sbjct: 402 VGPVLGDVDRLHQIAWNLLANAVKFTPQGGTVEVDLAQGEIHAQLVVRDNGIGISPAFLD 461

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
            ++   R      A   + + +    L ++ +             ++  + +     +  
Sbjct: 462 QIFERFRQ-----ADSTSTRVHGGLGLGLSIVRHLVELHGGTAAAESAGKGQGATFTV-- 514

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
                   +L  + + T      I  EG ++  N     L          +   V  E +
Sbjct: 515 --------RLPLLADGTP-----IQDEGKLVQANGRTEALTELVQWLAGLRVLVVDDEVD 561

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT 557
               +   L E     +     +  L +   +K   + +    +P    Y+L 
Sbjct: 562 AREFVATALGEYGVQVVTVGSVREALSALAAQKT-DVLVSDIGMPGEDGYALI 613


>gi|170758421|ref|YP_001787843.1| putative phosphate regulon sensor protein [Clostridium botulinum A3
           str. Loch Maree]
 gi|169405410|gb|ACA53821.1| sensor histidine kinase [Clostridium botulinum A3 str. Loch Maree]
          Length = 569

 Score =  336 bits (862), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 93/392 (23%), Positives = 174/392 (44%), Gaps = 33/392 (8%)

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
            ++            + ++  +   ++  +  +L +IL++   G+  I++E  ++  N  
Sbjct: 208 EDEIGRLGRTFNAMADILENSLV--EVRDKQNRLEAILKSMDSGVVAIDKEFKVIMINPY 265

Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
            +KLFG    DI+ +     +           L ++L        E   L   K    + 
Sbjct: 266 ANKLFGIKR-DIIGENLMDNIRDFE-------LEKVLKDKEPGYKEIGILWPEKRTLRVK 317

Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
              II K   +      + DI++ K+ +              + +  F+A VSHE++TPL
Sbjct: 318 TTDIISKY-DNIGTVAVVQDITDIKKLE--------------NMREQFVANVSHELKTPL 362

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           T+I GFSE +K      + + +  E +   I+   + +  ++ND+L +S IE  K  L  
Sbjct: 363 TSIKGFSETLKY-----VDDKKNREKFLQIINDEADRLTRLINDILVLSNIEKQKQELIK 417

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719
           E + L+E + +   LV+  A +K I I       +P ++ +     Q+ +N++ NAI +T
Sbjct: 418 EKIDLNELIEKVYCLVKKSAEDKNIRINI-VGEKVPLLIGNKDKYNQMIINLVDNAIKYT 476

Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
              G + I T       ++  V DTGVG++   L +  + F ++  ++     GTGLGL 
Sbjct: 477 EPNGYVSIGTK-QDKGNIVFWVEDTGVGISEEHLYRIFERFYRVDKARSRAEGGTGLGLA 535

Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
           + K +V +  GK  + S P +GT   +  PL 
Sbjct: 536 IVKHIVLSINGKIEVKSEPKRGTKFIVKIPLS 567


>gi|329890494|ref|ZP_08268837.1| sensory box protein [Brevundimonas diminuta ATCC 11568]
 gi|328845795|gb|EGF95359.1| sensory box protein [Brevundimonas diminuta ATCC 11568]
          Length = 539

 Score =  336 bits (862), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 96/401 (23%), Positives = 181/401 (45%), Gaps = 14/401 (3%)

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
           +   G+  +  +     R  +    +   + E T D I  +  +G     + A+ +L G+
Sbjct: 2   IALFGVLQDVTERERLLRAAQTNERRYRLLAENTGDVITRVKMDGSSKYISPAIQQLLGW 61

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
             E++  +  T ++      ++   + + +       LE       K  + + +    K 
Sbjct: 62  TYEEMSGQS-TDYVHPEDRHLVLGAIGKAVKTGEPTRLEH--RAVHKNGETVWVECTFKA 118

Query: 548 LPFSSCYSLT----MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
           L             + D+++ K  + ++  AK+ AE     KS+FLA +SHE+RTPLT++
Sbjct: 119 LKDEHGQVDDVVVVIRDMTQRKTLEAEVLEAKETAEAAVQAKSEFLANMSHELRTPLTSV 178

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           IGFS +++     P   P    Y   I  +   +L ++ND+LD SK+E+  + +  EP  
Sbjct: 179 IGFSGLLQGSEHLP---PEERIYVERIATASEALLGVINDILDYSKLEADAIEMDPEPFD 235

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSG 722
               V  A ++++   + K +++R   A + P R+  D   ++Q+ LN LSNA+ FT  G
Sbjct: 236 TRALVDGAAAIIESQCSLKGLILRVVVAADTPARLTGDKGRLRQVMLNFLSNAVKFTARG 295

Query: 723 G-QIIISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
              + +      +    +R  V DTG+G+   ++ +    F Q   S      GTGLGL 
Sbjct: 296 EVTLTLDGRFDESGLWRMRAAVSDTGIGIPPEKISELFHRFTQADASTTRVYGGTGLGLA 355

Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820
           +++ +V+   G+  + STP +G+      PL      +D +
Sbjct: 356 ISRRLVELMGGEIGVDSTPGQGSTFWFEAPLAVAEAENDAV 396



 Score = 44.6 bits (104), Expect = 0.067,   Method: Composition-based stats.
 Identities = 30/369 (8%), Positives = 80/369 (21%), Gaps = 15/369 (4%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
            +   G  K IS  + + +G    +M G     V           IG  +K       + 
Sbjct: 41  RVKMDGSSKYISPAIQQLLGWTYEEMSGQSTDYVHPEDRHLVLGAIGKAVKTGEPTRLEH 100

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                 G    V ++     +   + +        ++          A      +     
Sbjct: 101 RAVHKNGET--VWVECTFKALKDEHGQVDDVV--VVIRDMTQRKTLEAEVLEAKETAEAA 156

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
            + K    +    +              ++       E   + + +    +  L    + 
Sbjct: 157 VQAKSEFLANMSHELRTPLTSVIGFSGLLQGSEHLPPEERIYVERIATASEALLGVINDI 216

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE--------YLSHRNHPSLSAYFDEGE 319
               + +   I ++              +    +         +            D+G 
Sbjct: 217 LDYSKLEADAIEMDPEPFDTRALVDGAAAIIESQCSLKGLILRVVVAADTPARLTGDKGR 276

Query: 320 NLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAG-GLSTLLDAPKLSD 377
                 ++       F          +  F     ++    +   G G+     +     
Sbjct: 277 LR-QVMLNFLSNAVKFTARGEVTLTLDGRFDESGLWRMRAAVSDTGIGIPPEKISELFHR 335

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
                         T +  +     ++         +         F   +     E + 
Sbjct: 336 FTQADASTTRVYGGTGLGLAISRRLVELMGGEIGVDSTPGQGSTFWFEAPLAVAEAENDA 395

Query: 438 VDTRINKRK 446
           V+TR  +  
Sbjct: 396 VETRQGQTA 404


>gi|300362619|ref|ZP_07058795.1| sensor histidine kinase [Lactobacillus gasseri JV-V03]
 gi|300353610|gb|EFJ69482.1| sensor histidine kinase [Lactobacillus gasseri JV-V03]
          Length = 616

 Score =  336 bits (862), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 87/421 (20%), Positives = 178/421 (42%), Gaps = 35/421 (8%)

Query: 397 SARLHTIQWN-RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
             R   ++    + S  +     ++  Q  E      +  E           + E  +L 
Sbjct: 209 EMRKQALRVANGDYSGHVRVYAQDELGQLAEAFNTLSVRIERTQEIS-----DSERRRLD 263

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           ++L   +DG+   +R G I   N       G   +D++ KP T  L     +     + +
Sbjct: 264 NVLTHMTDGVIATDRHGNITIINETALDFLGKTEKDVIGKPITNLLGLKDVT-----IQD 318

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575
           +LS      +        +     +  +I +   F S     +HDI++ ++ + +     
Sbjct: 319 LLSTQQELVVRVNDNTRDEMILHANFSLIQRVTGFVSGLVCVLHDITQQQKNEREQQ--- 375

Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
                       F++ VSHE+RTPLT++  + E + +  +          + + I     
Sbjct: 376 -----------QFVSNVSHELRTPLTSLRAYVEALNDGAWKDPNIAPQ--FLHVIQDETE 422

Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV-------QLYANEKRILIRT 688
            ++ ++NDLL +S+++ G   +  E V+L++ V+  ++             ++K+  I+ 
Sbjct: 423 RMIRMINDLLSLSRMDRGVARMDLEWVNLNDFVNHVLNRFDMMLKSDSDKMHKKKYTIKR 482

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748
            F +    +  D   + Q+  NI++NAI ++P GG I +     + + VIL + D G+G+
Sbjct: 483 EFPHQALWVEIDTDKMMQVIDNIMNNAIKYSPDGGVITVRL-LQAQKHVILSISDQGLGI 541

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
              +L K    F ++  ++  +  GTGLGL ++K +V+A+ G+ +  S    G+   I  
Sbjct: 542 PRKDLNKIFDRFYRVDKARSRKQGGTGLGLAISKEIVEAHHGRIWADSAEGAGSTFYISL 601

Query: 809 P 809
           P
Sbjct: 602 P 602


>gi|283850395|ref|ZP_06367684.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           sp. FW1012B]
 gi|283574421|gb|EFC22392.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           sp. FW1012B]
          Length = 782

 Score =  336 bits (862), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 110/632 (17%), Positives = 219/632 (34%), Gaps = 60/632 (9%)

Query: 238 NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297
           ++        A+   +   E       ++     +E F  I        ++   L     
Sbjct: 145 DETMDTEAIVAYGRSIGADETAFRRALDQVPRMSRERFAKICQALDRFARHISALA--LG 202

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKS 356
              +    R            +    + +D  P P  V    G + + N +   LT   +
Sbjct: 203 NHQQAQRIRELRQTRDRLGIRDRNLADIIDFLPDPTLVLDEDGTVIFWNRALEKLTGVAA 262

Query: 357 VDDIEIA---------GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
           VD +  +         G  + LL        +   P           A  A +  +    
Sbjct: 263 VDMLGKSDFAYGTAFYGSPTPLLVDYARGAVSRPDPRYAVTEIGA-DAIIAEVTLLSLPG 321

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
            +   +        +     +       +  +       +     +   I+E   +G+ +
Sbjct: 322 GDRQ-VWGKAVALRDGTGRIIGGIETIRDVTERHQADTALRESEEKFRRIVETAHEGVLV 380

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
           ++ +      NR ++ + GY  +D+L + F  F+  +   +       +         E 
Sbjct: 381 LDGDFKATFANRRMADMLGYAPDDMLGRHFEDFVADDHLPLAREREARLR-QGESGVFEH 439

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAE------ 579
                        +          +         DI++ K+ + +L++ +   E      
Sbjct: 440 RLKTREGGGLWALVSASPLYDVSGASLGALGMFTDITDRKRIEEELANHRHRLEAEVEER 499

Query: 580 -------------------KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN---QRFGP 617
                              +    KS FL+ VSHE+RTPLT+I+GF+++I     ++F P
Sbjct: 500 TRDLRLQAMELAEANIRMSELDRLKSAFLSTVSHELRTPLTSILGFAKLIGRDFTEQFLP 559

Query: 618 LGN---------PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
           L +          R  +  + +      +  ++ND+LD+S+IESG M+     ++  + +
Sbjct: 560 LASGQAALEARGRRIADNLSVVFHEAERLTRLINDVLDLSRIESGSMHWRDRRIAPLDVL 619

Query: 669 SEAISLVQ-LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727
             A   +  L A    I+        +P +  D   + Q+  N+L NA+ FT +G ++ +
Sbjct: 620 RTAARSIAGLLAARPEIVFVFDATEQVPDLFMDPDQLIQVVSNLLQNAVKFTRTG-EVRM 678

Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ--IRGEGTGLGLPLAKAMV 785
           +   T  E V + V D+G+G+   ELE     F Q+          +GTGLGL +   +V
Sbjct: 679 TVR-TDGEAVQIVVADSGIGIPESELESIFGKFHQVGRGDTLSDAAKGTGLGLAICGQIV 737

Query: 786 DANMGKFYIFSTPAKGTLIEIIFP-LYDTSHP 816
               G+ +  S   +G+   +  P L     P
Sbjct: 738 RHYGGRIWATSRLGQGSAFHVRLPCLAQEEGP 769



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 31/264 (11%), Positives = 70/264 (26%), Gaps = 16/264 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D        +  +   +G     M+G    D     H+         L++  +   +  
Sbjct: 381 LDGDFKATFANRRMADMLGYAPDDMLGRHFEDFVADDHLPLAREREARLRQGESGVFEHR 440

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRG-FGIVHVN------------RVDNDPRA 195
           L   EG  L+  +  +A P+Y  +    G  G F  +               R++ +   
Sbjct: 441 LKTREGGGLWALV--SASPLYDVSGASLGALGMFTDITDRKRIEEELANHRHRLEAEVEE 498

Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255
             + L  +   L E     S +++ K    S  S      + + +           +   
Sbjct: 499 RTRDLRLQAMELAEANIRMSELDRLKSAFLSTVSHELRTPLTSILGFAKLIGRDFTEQFL 558

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA-Y 314
                    E       ++   +        +    + + S+     +  R+        
Sbjct: 559 PLASGQAALEARGRRIADNLSVVFHEAERLTRLINDVLDLSRIESGSMHWRDRRIAPLDV 618

Query: 315 FDEGENLTPETVDKCPIPFFVYSH 338
                      +   P   FV+  
Sbjct: 619 LRTAARSIAGLLAARPEIVFVFDA 642



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 50/415 (12%), Positives = 96/415 (23%), Gaps = 46/415 (11%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMR---------------LCDVSDILHIDPNNHI 133
           +D  G +   +  L K  G  A  M+G                 L D +      P+   
Sbjct: 241 LDEDGTVIFWNRALEKLTGVAAVDMLGKSDFAYGTAFYGSPTPLLVDYARGAVSRPDPRY 300

Query: 134 GDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193
                  +    + TL  + G +  V     A+ +        G  G   +      +  
Sbjct: 301 AVTEIGADAIIAEVTLLSLPGGDRQVW--GKAVALRDGTGRIIG--GIETIRDVTERHQA 356

Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSS--LTEYYAH 249
               +  ++KF  + E       V    +                 + +      ++ A 
Sbjct: 357 DTALRESEEKFRRIVETAHEGVLVLDGDFKATFANRRMADMLGYAPDDMLGRHFEDFVAD 416

Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
               L  E+   L   ES +  +    T              L + S  S   L      
Sbjct: 417 DHLPLAREREARLRQGESGV-FEHRLKTREGGGLWALVSASPLYDVSGASLGALGMFTDI 475

Query: 310 SLSAYFDEGENLTPETVD-------------KCPIPFFVYSHGNLFYANPSFLLLTKYKS 356
           +     +E        ++                +         L     +FL    ++ 
Sbjct: 476 TDRKRIEEELANHRHRLEAEVEERTRDLRLQAMELAEANIRMSELDRLKSAFLSTVSHEL 535

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
              +    G + L+                        A  AR   I  N          
Sbjct: 536 RTPLTSILGFAKLIGRDFTEQ--------FLPLASGQAALEARGRRIADNLSVVFHEAER 587

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRK-MEIEVMQLCSILEATSDGIAIINR 470
                N   +            D RI     +      +  +L A  + + + + 
Sbjct: 588 LTRLINDVLDLSRIESGSMHWRDRRIAPLDVLRTAARSIAGLLAARPEIVFVFDA 642


>gi|304405930|ref|ZP_07387588.1| multi-sensor signal transduction histidine kinase [Paenibacillus
           curdlanolyticus YK9]
 gi|304345173|gb|EFM11009.1| multi-sensor signal transduction histidine kinase [Paenibacillus
           curdlanolyticus YK9]
          Length = 610

 Score =  336 bits (862), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 102/611 (16%), Positives = 218/611 (35%), Gaps = 65/611 (10%)

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE---E 266
           +K   + + +      + ++  P  +  +    L+    +   + + E   L +S     
Sbjct: 49  LKDQANLLSEMAAPTLAGKTVNPDSQQPDSAEGLSYVVRNLFSISEAEIQVLDSSGKVLA 108

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
           +S    + +           +   ++++N +E  +  + +          EG  +     
Sbjct: 109 TSDASHQSYIGKKNTSLAVTRALQSIRDNEEEIIDEDNVKKKIIAQPVTYEGGRVVGAVY 168

Query: 327 DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
               +     +   +         +    ++  + + G L  LL     +    +     
Sbjct: 169 IVASMNDLYDTMDRVN-------RIFVSGTLIALGLTGVLGILLAHTITNPIKVLTRSAA 221

Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
             ++                        F    K     E    +    +          
Sbjct: 222 AVAEGR----------------------FDQQVKVLGDDEIGRLSEAFNDMTKRLREALS 259

Query: 447 M-EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           + E E  +L S+L   SDG+   +  G+++ +NR   +L      +       + L    
Sbjct: 260 VNEEEREKLASVLANMSDGVVASDESGMVIVSNRRALELLDVNACE--GCELAMLLGMEG 317

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISE 563
              +     E+L     + L K    +   E LL +                  + D++E
Sbjct: 318 DEAV-----ELLQSGGSRLLRK---NNDDGEWLLRVTFTPVHRRDKGTTGTIAVLEDVTE 369

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            ++ +                + +F+A VSHE+RTPLT I  ++E + +       + R 
Sbjct: 370 QEKLE--------------QSRREFVANVSHELRTPLTTIRSYAEALDDGAL----DERQ 411

Query: 624 I--EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
           +   + + I      ++ +V DLL +S+ +S ++ L     S+ E + EA        ++
Sbjct: 412 LADRFVSVIRNETERMIRLVTDLLHLSRFDSNQVPLRRRATSVPELLEEAADRFAFQTSQ 471

Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
           K I       + +  +  D   + Q+  N++SNAI +T  GG I++S        + + V
Sbjct: 472 KGIRTEVYIDDAVGTVWLDRDGIDQVLDNLISNAIKYTLDGGVIVLSARKPETNALAISV 531

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
           RD+G+G+   +L +    F ++  ++     GTGLGL +A+ +V A+ G   + S   +G
Sbjct: 532 RDSGIGIPKKDLGRIFDRFYRVDKARSRNMGGTGLGLSIAREIVRAHGGTITLESELNEG 591

Query: 802 TLIEIIFPLYD 812
           T +    P  D
Sbjct: 592 TTVTFTLPAPD 602


>gi|206889312|ref|YP_002248455.1| two-component hybrid sensor and regulator [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206741250|gb|ACI20307.1| two-component hybrid sensor and regulator [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 620

 Score =  336 bits (862), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 93/403 (23%), Positives = 188/403 (46%), Gaps = 29/403 (7%)

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490
              +  +   +    +++  +  L +I++  +DG+ +++++G+I   N A S++FG    
Sbjct: 232 EVFDRYEFALKDAVVELQDTLAYLTTIIDNMADGLIVVDKDGVINHINPAASEMFGKAEF 291

Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
           +++ K   +  ++    V     TE +  +    + +    +  +           +   
Sbjct: 292 EMIGKNVKILGKELDKLVKKSLNTEEIVSNEINLVNERVGKAVAKSIKKEYFSEESEAKG 351

Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
                + + DI++ K+                  K++F+  VSHE+RTPLT+I+GF E+I
Sbjct: 352 ILGSVILIRDITQEKEV--------------DRLKTEFITVVSHELRTPLTSILGFIEII 397

Query: 611 -----------KNQRFGPLGNP--RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
                       +     L     +  +    I   G  +  ++ND+LDISK+ESGK   
Sbjct: 398 NKKFTENILPHLDMNNFRLSKAVNKINKNFKIILSEGERITSLINDVLDISKLESGKAIW 457

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
           +F+ +S+   +++A   +     +K I        ++P I AD   + Q+ +N+LSNA+ 
Sbjct: 458 NFKEISIQGVITDAYKALSSLFEQKGIPCYIEIQPSLPFINADRERLIQVVINLLSNALK 517

Query: 718 FTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
           FT  G  +   T   ++ E+++ V D+G+G+   E E+  + F Q+ +  + + +GTGLG
Sbjct: 518 FTEKG-YVKCKTALNAD-EIVVSVEDSGIGIPEEEKERIFEKFKQVGDLIRGKPKGTGLG 575

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820
           L ++K +V+A+ GK ++ S   KG+      PL      ++ I
Sbjct: 576 LAISKQIVEAHGGKIWVESELGKGSTFYFTIPLKRKEEFNENI 618


>gi|162455442|ref|YP_001617808.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
 gi|161166024|emb|CAN97329.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
          Length = 922

 Score =  336 bits (862), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 110/705 (15%), Positives = 231/705 (32%), Gaps = 39/705 (5%)

Query: 134 GDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193
              L     +  +    P   +   +P+        S+ R  +      +          
Sbjct: 60  RARLIGSGMYTHRPREHPHAASENRLPVIEHEERHRSQIRALTEASH-ALASACSAPAIQ 118

Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY--YAHKD 251
             +     +       +   +   E+          P     +  +     +       D
Sbjct: 119 EIVLSAAARLSGSGRAVLILNDEDERPVVRAALGLDPALLAELSGRPLPSADDGIARALD 178

Query: 252 DVLKTEKYPLLTSEESSLP-EQEDFHTINLNQYTKKQYFGTLQNNS---KESFEYLSHRN 307
                   PL+ S   S     E     +       +        +          +   
Sbjct: 179 GAAHVAAAPLIVSGRVSGVLAVERAAPASGEDAWLIEALADQAAVALAGPAEGAAHAGAR 238

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVD-DIEIAG 364
            P      D  +            P + +      +   N +F  + +Y         A 
Sbjct: 239 EPPARLEADVQDERYRLLGRAIKDPIWDWDIRTDRVER-NATFHEVFRYTPEQTAPTGAW 297

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
            +  +L   +     A++ ++           SA+    + +   +  +        +  
Sbjct: 298 WVDRMLPEDRDRIARALEELI----HGDADTWSAQYRVYRGDGSVAR-VFDRGAVLRDAG 352

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
              +   G   +  +    +  ++    +L     A   G   ++ E    + + +++++
Sbjct: 353 GRAIRMVGATVDLTERFRIESALQDREDRLRLATWAADVGTWRVDLETRYDTRDASLNRI 412

Query: 485 FGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
            G    +  +    +   +       +       +       +    + +    + +  R
Sbjct: 413 LGLDERETTQPVGDWLTRVHPEDLDAVIAMHERSVRERCIYDIIHRVVRADGSIRWVHDR 472

Query: 543 IIIKKLPFSSCYSLT--MHDISEWKQEKNKLSHAKKIAEKE--------------SSHKS 586
             I      S   LT  + DI+E KQ +++ +   +  ++               +  K 
Sbjct: 473 GRIVADRDGSPLFLTGAVVDITELKQLEHERTELLRREQQALAQSEKDRIRAEDANRMKD 532

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
           +FLA VSHE+RTPLTAI+G++ +IK++   P    R  +    I+R+ +    IV+D+L 
Sbjct: 533 EFLATVSHELRTPLTAILGWARLIKDKALAP---ERVKQGMASIERNAHAQAQIVDDILT 589

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706
           +S+I +GK+ L    V L   +  A+  +   A  K I IR      +  +  D   ++Q
Sbjct: 590 VSRIITGKLRLRTIAVDLAAVIEAAVDTITPTAKAKEIEIRVEPGEGLSHVCGDPDRLQQ 649

Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
           +  N+LSNA+ FTP  G + +    + + +V + V D G G+    L      F Q  +S
Sbjct: 650 VMWNLLSNAVKFTPKRGLVTVRVGRSDS-QVAISVTDNGKGIATSFLPYVFDRFRQGDSS 708

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFPL 810
                 G GLGL + + +V+ + G     S     G+   +  PL
Sbjct: 709 PTRAHGGLGLGLAIVRHLVELHGGTVEAESPGEGAGSTFTVTLPL 753


>gi|183179349|ref|ZP_02957560.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae MZO-3]
 gi|183012760|gb|EDT88060.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae MZO-3]
          Length = 740

 Score =  336 bits (861), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 93/367 (25%), Positives = 165/367 (44%), Gaps = 10/367 (2%)

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
              +       R+ +RK+  +      IL+AT + +  ++ +G  L+ N     L G   
Sbjct: 373 AIQLSQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTVNAKFLDLMGLYN 432

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
            +++ K                    +      Q  E   +  T  ++ + +        
Sbjct: 433 NEVIDKEPQEIFPAEVAERFAAAHQVLTQQQSSQNYEVSLVDYTGVQREMLVYEASFSDR 492

Query: 550 FS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
               +     + D++E K+ +++L  AK+ A+  S  K DFLA +SHEIRTP+ AI+G +
Sbjct: 493 ADKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMA 552

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
            +  N            +Y   I+ S   +L I+ND+LD SK+E+GK+N+     +LD+ 
Sbjct: 553 HLALNTPLDTT----QRKYVTRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDV 608

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI- 725
           +    ++V L A EK I        +IP  ++ D   + Q+ +N+  NA+ FT  G  + 
Sbjct: 609 LDNVTAVVSLKAQEKGIEFLMDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVL 668

Query: 726 --IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
              +S  +     +   V+DTG+G+   +L+     F Q  NS   +  GTGLGL ++K 
Sbjct: 669 SARVSQLNEQQVTLRFAVKDTGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQ 728

Query: 784 MVDANMG 790
           +V+   G
Sbjct: 729 LVELMGG 735



 Score = 44.6 bits (104), Expect = 0.067,   Method: Composition-based stats.
 Identities = 13/143 (9%), Positives = 43/143 (30%), Gaps = 3/143 (2%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + + A G    ++ +    +G Y  ++I     ++      +       +L +Q +   
Sbjct: 408 MYCLSADGKFLTVNAKFLDLMGLYNNEVIDKEPQEIFPAEVAERFAAAHQVLTQQQSSQN 467

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
                 ++ T +   + +       R  + +G    GI+       +     ++  +   
Sbjct: 468 YEVSL-VDYTGVQREMLVYEASFSDRADKVNGI--VGILLDMTERKEMEDELRKAKEAAD 524

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQ 228
            + + K    +    +       
Sbjct: 525 AMSQAKGDFLANMSHEIRTPMNA 547



 Score = 42.7 bits (99), Expect = 0.29,   Method: Composition-based stats.
 Identities = 22/228 (9%), Positives = 56/228 (24%), Gaps = 33/228 (14%)

Query: 286 KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYA 344
                 L + S       +            E   L  E +D  P P   + + G     
Sbjct: 361 HWLSQMLDDLSVAIQLSQNAEQQRLAERKVLEQSQLNQEILDATPNPMYCLSADGKFLTV 420

Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
           N  FL L    + + I+              ++             +   + +  +  + 
Sbjct: 421 NAKFLDLMGLYNNEVIDKEP------QEIFPAEVAERFAAAHQVLTQQQSSQNYEVSLVD 474

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI------- 457
           +       + +      ++  +     GI  +  + +  + ++        ++       
Sbjct: 475 YTGVQREMLVYEASFS-DRADKVNGIVGILLDMTERKEMEDELRKAKEAADAMSQAKGDF 533

Query: 458 LEATS-------DGIAI---------INREGI--ILSTNRAVSKLFGY 487
           L   S       + I           ++      +   N +   L G 
Sbjct: 534 LANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYVTRINESAKNLLGI 581


>gi|197118247|ref|YP_002138674.1| HAMP/PAS domain-containing phosphate sensor histidine kinase
           [Geobacter bemidjiensis Bem]
 gi|197087607|gb|ACH38878.1| phosphate sensor histidine kinase, HAMP and PAS domain-containing
           protein [Geobacter bemidjiensis Bem]
          Length = 460

 Score =  336 bits (861), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 93/425 (21%), Positives = 185/425 (43%), Gaps = 28/425 (6%)

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
               +D       A         +  +                   N +  +        
Sbjct: 45  TYLLADLGTRPLRAVAAMASRIGKGEINTKLPAVTDPQVTELARVINEMAAKANAQLD-- 102

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            ++E E  +L +IL    +GI + + +G I   N A   LFG   +++  +   + ++ +
Sbjct: 103 -RLEAEKNRLDAILRGMGEGIMVADPQGCITLVNPAFKGLFGLH-DEVEGR---LLIDIS 157

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564
               ++    +ILS    +  E       KE  LL   + + +    +      HDIS+ 
Sbjct: 158 RHPALHESFRDILSSRQERVEELQLHSP-KERSLLVHWVPLVECGVVTGVVAVFHDISDL 216

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           +Q +                + DF+A VSHE+RTP+T I G++E +     G L +P   
Sbjct: 217 RQME--------------KMRRDFVANVSHELRTPITIIKGYAETLL---AGALEHPTQA 259

Query: 625 -EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            ++ + +    + +  +V+DLL +S++ESG + L    V + E     + L++    E+ 
Sbjct: 260 TKFVSIVHSHADRLASLVSDLLTLSQLESGAVPLEARSVKVQEIAERVVVLLERKIRERG 319

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
           I++  +   + P ++AD   ++Q+ +N+L NA+ +TP+GG + +S        V + V+D
Sbjct: 320 IIVDLAGLKDAPSVMADPGRLEQVIVNLLDNAVKYTPAGGSVTLSAADREE-SVTIAVQD 378

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TG+G+ + +L +  + F ++ +++     GTGLGL + K +V    G     S+  +G+ 
Sbjct: 379 TGIGIPSKDLSRIFERFYRVDSARSRDEGGTGLGLSIVKHIVQLQGGTVSAQSS-GQGST 437

Query: 804 IEIIF 808
             +  
Sbjct: 438 FFVTL 442



 Score = 44.2 bits (103), Expect = 0.098,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 65/241 (26%), Gaps = 16/241 (6%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK-TT 148
           D  G +  ++       G +  ++ G  L D+S    +  +    D+L  +     +   
Sbjct: 126 DPQGCITLVNPAFKGLFGLH-DEVEGRLLIDISRHPAL--HESFRDILSSRQERVEELQL 182

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
             P E + L   + L            +G     + H          + +      SH  
Sbjct: 183 HSPKERSLLVHWVPLV------ECGVVTGV--VAVFHDISDLRQMEKMRRDFVANVSHEL 234

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
                      E     + + P    +  + V S  +  A     L T    L   E  +
Sbjct: 235 RTPITIIKGYAETLLAGALEHPTQATKFVSIVHSHADRLASLVSDLLT----LSQLESGA 290

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
           +P +     +                      +    ++ PS+ A     E +    +D 
Sbjct: 291 VPLEARSVKVQEIAERVVVLLERKIRERGIIVDLAGLKDAPSVMADPGRLEQVIVNLLDN 350

Query: 329 C 329
            
Sbjct: 351 A 351


>gi|42518152|ref|NP_964082.1| two-component regulatory system histidine kinase [Lactobacillus
           johnsonii NCC 533]
 gi|268318622|ref|YP_003292278.1| two-component system sensor histidine kinase [Lactobacillus
           johnsonii FI9785]
 gi|41582436|gb|AAS08048.1| two-component regulatory system histidine kinase [Lactobacillus
           johnsonii NCC 533]
 gi|262396997|emb|CAX66011.1| two-component system sensor histidine kinase [Lactobacillus
           johnsonii FI9785]
 gi|329666464|gb|AEB92412.1| two-component system histidine kinase [Lactobacillus johnsonii DPC
           6026]
          Length = 616

 Score =  336 bits (861), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 87/421 (20%), Positives = 178/421 (42%), Gaps = 35/421 (8%)

Query: 397 SARLHTIQWN-RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
             R   ++    + S  +     ++  Q  E      +  E           + E  +L 
Sbjct: 209 EMRKQALRVANGDYSGHVRVYAQDELGQLAEAFNTLSVRIERTQEIS-----DSERRRLD 263

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           ++L   +DG+   +R G I   N       G   +D++ KP T  L     +     + +
Sbjct: 264 NVLTHMTDGVIATDRHGNITIINETALDFLGKTEKDVIGKPITNLLGLKDVT-----IQD 318

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575
           +LS      +        +     +  +I +   F S     +HDI++ ++ + +     
Sbjct: 319 LLSTQQELVVRVNDNTRDEMILHANFSLIQRVTGFVSGLVCVLHDITQQQKNEREQQ--- 375

Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
                       F++ VSHE+RTPLT++  + E + +  +          + + I     
Sbjct: 376 -----------QFVSNVSHELRTPLTSLRAYVEALNDGAWKDPNIAPQ--FLHVIQDETE 422

Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN-------EKRILIRT 688
            ++ ++NDLL +S+++ G   +  E V+L++ V+  ++   +          +K+  I+ 
Sbjct: 423 RMIRMINDLLSLSRMDRGVAKMDLEWVNLNDFVNHVLNRFDMMLKSDTDKTHKKKYSIKR 482

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748
            F +    +  D   + Q+  NI++NAI ++P GG I +     + + VIL + D G+G+
Sbjct: 483 EFPHQALWVEIDTDKMMQVIDNIMNNAIKYSPDGGVITVRL-LQAQKHVILSISDQGLGI 541

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
              +L K    F ++  ++  +  GTGLGL ++K +V+A+ G+ +  S    G+   I  
Sbjct: 542 PRKDLNKIFDRFYRVDKARSRKQGGTGLGLAISKEIVEAHHGRIWADSAEGSGSTFYISL 601

Query: 809 P 809
           P
Sbjct: 602 P 602


>gi|239997165|ref|ZP_04717689.1| putative two-component member protein [Alteromonas macleodii ATCC
           27126]
          Length = 1033

 Score =  336 bits (861), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 106/511 (20%), Positives = 206/511 (40%), Gaps = 31/511 (6%)

Query: 313 AYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
               E E +     D        V   G +  ANP+   +  Y   + I      + ++ 
Sbjct: 213 VRAIESERIQSAITDTAVDAILTVDDKGIIKTANPAVERIYGYTQQEIIG--MHAAEVVT 270

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
             +                   I     +  ++ + E       + + K +  P  +   
Sbjct: 271 PERRHLYGDDFFSQRVVPTEQIIGTGREVEVLRKDGERIPVRLGVGYTKIDGKPVFVSFA 330

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI--INREGI-ILSTNRAVSKLFGYP 488
               +    +  +  +     +  S++     G+A   ++  G  ++  + AV+++ GYP
Sbjct: 331 ---SDLRKRKEMEDALRESEAKFRSLISNIP-GMAYRCLSMPGWPMVFISDAVTEVTGYP 386

Query: 489 VEDIL----RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
            ED      ++ FT     +    ++                       K  ++  +   
Sbjct: 387 PEDFTLPNPKRSFTDLYHPDDVERLSSI------SPDVGAFSYEYRIVAKSGEVKWVIEH 440

Query: 545 IKKLPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
             ++             + DI+  K  +N+L  AK+ AE+ ++ ++ FLA +SHEIRTP+
Sbjct: 441 GVQVKDDDGMVLYVDGFISDITHRKVMENELKAAKEKAEQAAAARTAFLANMSHEIRTPM 500

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
            AIIGFS+++  +            +   I+RS   +L ++ND+LD +K++ GK++L + 
Sbjct: 501 NAIIGFSDLMLGEAL----REEQKSHLTTINRSARSLLHLLNDILDSAKLDKGKLDLDYR 556

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFT 719
              + E +   IS   L A  K++ +  +  +++          ++Q+  N++ NA+ FT
Sbjct: 557 DFLIREELDLVISTFWLEAKRKKVGLVLNVDDSVANGYRGVPERMRQVLNNLIGNAVKFT 616

Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
             G ++ I+   +  + V   V DTG+GMT  ++E+   PF Q   S   +  GTGLG  
Sbjct: 617 HEG-EVTINVK-SDEKYVYFDVTDTGIGMTQEQVERVFDPFSQADASMSRKYGGTGLGTT 674

Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           ++K +V+   G     S   KGT      PL
Sbjct: 675 ISKQLVELMGGNICATSEKGKGTTFTFRLPL 705



 Score = 44.2 bits (103), Expect = 0.083,   Method: Composition-based stats.
 Identities = 27/244 (11%), Positives = 69/244 (28%), Gaps = 27/244 (11%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL--HIDPNNHIGDLLKRQNTWYG- 145
           +D  G +K  +  + +  G    ++IGM   +V      H+  ++     +       G 
Sbjct: 236 VDDKGIIKTANPAVERIYGYTQQEIIGMHAAEVVTPERRHLYGDDFFSQRVVPTEQIIGT 295

Query: 146 --KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF-GIVHVNRVDNDPRALGKRLDK 202
             +  +   +G  + V + +          +  G   F       R   +     +  + 
Sbjct: 296 GREVEVLRKDGERIPVRLGVGYT-------KIDGKPVFVSFASDLRKRKEMEDALRESEA 348

Query: 203 KFSHLHEIKKGHSS--VEKEKYDIFSQQS--------PPPHLRMKNKVSSLTEYYAHKDD 252
           KF  L     G +   +    + +             PP    + N   S T+ Y   D 
Sbjct: 349 KFRSLISNIPGMAYRCLSMPGWPMVFISDAVTEVTGYPPEDFTLPNPKRSFTDLYHPDDV 408

Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
              +   P +     +   +      +       ++   ++++           +  +  
Sbjct: 409 ERLSSISPDVG----AFSYEYRIVAKSGEVKWVIEHGVQVKDDDGMVLYVDGFISDITHR 464

Query: 313 AYFD 316
              +
Sbjct: 465 KVME 468


>gi|298247709|ref|ZP_06971514.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297550368|gb|EFH84234.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 747

 Score =  336 bits (861), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 98/509 (19%), Positives = 204/509 (40%), Gaps = 37/509 (7%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
            + S    E        VD            G +   N +   +  Y + + I     ++
Sbjct: 250 ITESQAAQERLRALAAIVDSSDDAILSKTLSGIITSWNSAAQRIYGYTAQEMIGT--HVT 307

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
            L    +       + +M        +        ++ + +  L ++       ++    
Sbjct: 308 RLFPPDQ---YEEFEQIMARIRLGERVD-HFETRRVRKDGQE-LLVSVTISPIKDEDGVI 362

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
              + I  +  + R     +E +  +L     +   GI + +  G +L TN+A   L GY
Sbjct: 363 HGASTIARDITEQRR----LEAKSQRL---FASNLIGIFVADETGRLLETNQAFLDLVGY 415

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
             ++   +          P+     L +        +  + T+   K  K L + + +  
Sbjct: 416 TQDEWQAEALYAMTPPFFPASFLRPLIQSARAGDGSSDPQETILLHKSGKALPIFMALTC 475

Query: 548 LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
           +  +      + DISE K  + +              K  F+   SHE++TP+T++ GF 
Sbjct: 476 IEHTQTCIGFVLDISERKALEQR--------------KDIFIGMASHELKTPVTSLKGFL 521

Query: 608 EV----IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
            +    +  Q     GN + ++Y   +D     +  ++NDLLD+S +++G+M    E V 
Sbjct: 522 SLVQRLLSQQGMSQQGNEKILQYLARMDAQIEKLTKLINDLLDVSMMQTGQMIYREEQVD 581

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
           +D  V E +  VQ      R+L++         +  D   + Q+ +N+L NAI ++P+  
Sbjct: 582 VDTLVREIVEDVQETTQTHRLLVQ---GEARATVFGDPDRLGQVLINLLQNAIKYSPNAN 638

Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
            ++I    T   +V++RV+D G+G++    +K  + F ++ + ++    G G+GL +++ 
Sbjct: 639 TVLIHLGTTEE-QVLIRVQDFGLGISKEHHQKIFERFYRVTDQEEKTYPGMGIGLSISQE 697

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
           +V  + G F++ S   KG +  +  PL  
Sbjct: 698 IVKRHGGHFWVESERNKGAIFSLSLPLMQ 726



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/232 (12%), Positives = 63/232 (27%), Gaps = 20/232 (8%)

Query: 93  GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK-RQNTWYGKTTLWP 151
           G +   +    +  G  A +MIG  +  +      +    I   ++  +   + +T    
Sbjct: 281 GIITSWNSAAQRIYGYTAQEMIGTHVTRLFPPDQYEEFEQIMARIRLGERVDHFETRRVR 340

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
            +G  L V + ++  PI   +    G     I              +RL+ K   L    
Sbjct: 341 KDGQELLVSVTIS--PIKDEDGVIHGAST--IARDITEQ-------RRLEAKSQRLFASN 389

Query: 212 KGHSSVEKEKYDIFSQQSPPPHLR-------MKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
                V  E   +         L            + ++T  +      L+         
Sbjct: 390 LIGIFVADETGRLLETNQAFLDLVGYTQDEWQAEALYAMTPPF-FPASFLRPLIQSARAG 448

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
           + SS P++      +            +++        L      +L    D
Sbjct: 449 DGSSDPQETILLHKSGKALPIFMALTCIEHTQTCIGFVLDISERKALEQRKD 500



 Score = 46.9 bits (110), Expect = 0.015,   Method: Composition-based stats.
 Identities = 19/261 (7%), Positives = 52/261 (19%), Gaps = 13/261 (4%)

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY 246
                  +   + L        +     +          + Q    +   +   + +T  
Sbjct: 250 ITESQAAQERLRALAAIVDSSDDAILSKTLSGIITSWNSAAQRIYGYTAQEMIGTHVTRL 309

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
           +         +    +   E     +      +  +         +++         +  
Sbjct: 310 FPPDQYEEFEQIMARIRLGERVDHFETRRVRKDGQELLVSVTISPIKDEDGVIHGASTIA 369

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGG 365
              +     +     +        I  FV    G L   N +FL L  Y   +    A  
Sbjct: 370 RDITEQRRLE---AKSQRLFASNLIGIFVADETGRLLETNQAFLDLVGYTQDEW--QAEA 424

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
           L  +      +             D +       L                         
Sbjct: 425 LYAMTPPFFPASFLRPLIQSARAGDGSSDPQETILLHKSGKALPIFMALTCIEHTQTC-- 482

Query: 426 ENMPQNGIEPEDVDTRINKRK 446
                 G   +  + +  +++
Sbjct: 483 -----IGFVLDISERKALEQR 498



 Score = 38.9 bits (89), Expect = 4.0,   Method: Composition-based stats.
 Identities = 46/444 (10%), Positives = 113/444 (25%), Gaps = 48/444 (10%)

Query: 28  KKIDNGFETEKSKKE----------NPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFD 77
           +++D+ FET + +K+          +P  D     +        ++    L++++  +F 
Sbjct: 329 ERVDH-FETRRVRKDGQELLVSVTISPIKDEDGVIHGASTIARDITEQRRLEAKSQRLFA 387

Query: 78  PIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL 137
                    +  D  G L E ++     +G    +     L  ++      P + +  L+
Sbjct: 388 SNLIG---IFVADETGRLLETNQAFLDLVGYTQDEWQAEALYAMTPPFF--PASFLRPLI 442

Query: 138 KR-----QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRG-FGIVHVNRVDN 191
           +       ++   +T L    G          ALPI+         +   G V       
Sbjct: 443 QSARAGDGSSDPQETILLHKSG---------KALPIFMALTCIEHTQTCIGFVLDISERK 493

Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD 251
                       F  +   +        + +    Q+        +     + +Y A  D
Sbjct: 494 ALEQR----KDIFIGMASHELKTPVTSLKGFLSLVQRLLSQQGMSQQGNEKILQYLARMD 549

Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
             ++             + +  D   +   Q   ++    +    +E  E +        
Sbjct: 550 AQIEKLT--------KLINDLLDVSMMQTGQMIYREEQVDVDTLVREIVEDVQETTQTHR 601

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYSHGNLFY---ANPSFLLLTKYKSVDDIEIAGGLST 368
                E         D+            + Y   AN + L+         +        
Sbjct: 602 LLVQGEARATVFGDPDRLGQVLINLLQNAIKYSPNAN-TVLIHLGTTEEQVLIRVQDFG- 659

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
           L  + +       +   +   +           +I           F    + N+     
Sbjct: 660 LGISKEHHQKIFERFYRVTDQEEKTYPGMGIGLSISQEIVKRHGGHFWVESERNKGAIFS 719

Query: 429 PQNGIEPEDVDTRINKRKMEIEVM 452
               +   +      + + E    
Sbjct: 720 LSLPLMQRESQVLSQEEERERMKQ 743


>gi|124004919|ref|ZP_01689762.1| signal transduction histidine kinase [Microscilla marina ATCC 23134]
 gi|123989597|gb|EAY29143.1| signal transduction histidine kinase [Microscilla marina ATCC 23134]
          Length = 1367

 Score =  336 bits (861), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 141/779 (18%), Positives = 260/779 (33%), Gaps = 62/779 (7%)

Query: 92   HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN--HIGDLLKRQNTWYGKTTL 149
             G +   +    K  G    +++G    D+       P         L+    W      
Sbjct: 314  DGTVTMCNNYWQKVTGYTKEEIVGKNYFDLFVQESERPERWNEFDKTLQNGGFWETSERT 373

Query: 150  WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFG--IVHVNRVDNDPRALGKRLDKKFSHL 207
               + T     I   ++ + +   E  G    G  I    +V    +   + L   F + 
Sbjct: 374  ILTK-TGDVRYIQFNSVILNNEKGELGGLTKVGKDITENRKVMKALKQSNEALQDLFDNS 432

Query: 208  HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
            +++    S   K  +   + +    +   + K  ++ +                +   E+
Sbjct: 433  NDLIFICSMRGKFLFVNKTFKKKTGYTNKELKKMNILDLLHQDTKKSTLSTVKSIIQGET 492

Query: 268  SLPEQEDFHTINLNQYTKKQYFGTLQNNSKE---SFEYLSHRNHPSLSAYFDEGENLTPE 324
                              +        + K            +            ++   
Sbjct: 493  VYNFITILSHKEGGNLYLEGSVTCRFEDGKPTAMRGILHDTTDKIRAEKAQTLYYSIANL 552

Query: 325  TVDKCPIPFF---VYSH-GNLFYANPSFLLLTKYKSVDD-----IEIAGGLSTLLDAPKL 375
            TV    +  F   ++   GN+  A   ++ L             ++ A     L      
Sbjct: 553  TVRSKNMNQFYQSIHRELGNVIQAKNFYIKLYDSDHRQMSYHYYVDEAFASGGLEIRQNK 612

Query: 376  SDNN---------------AIKPVMLYRSDRTCIAASARLHTI--QWNRENSLAMTFIPF 418
            +D                   +   L  ++   ++  A    I      EN +       
Sbjct: 613  TDKGLAEYVVESKKALFLYEEEIQALAEAEGLILSGPAPKIWIGVPLKFENEVIGLISVK 672

Query: 419  EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ-------LCSILEATSDGIAIINRE 471
               ++    +    +            + +    +       L +I E++S  +  INR 
Sbjct: 673  SYRDRNIYTIKDLELLDFVSGQIALAIQRKRNEAKLSSKTAQLQAIFESSSHVMWSINRN 732

Query: 472  GIILSTNRAVSKLF----GYPVEDILRK-PFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
              + S N   ++      G            +  L +     +   + E       Q  E
Sbjct: 733  WKLTSFNHNYAETLQRQYGVSPTLNRGLIQLSAKLRKTNNYKVWQKMYENAFKGETQYFE 792

Query: 527  KITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
              +     E     + +   +L        S   HDI++ K  + ++  AK+IAEK    
Sbjct: 793  IESDTQDGETWWREVYLNPIRLEDGRIEEVSAISHDITQKKLVEQEVIRAKEIAEKSLKV 852

Query: 585  KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
            K  FLA +SHEIRTP+  IIG  +++ +         +  EY   I +S   +L+I+ND+
Sbjct: 853  KERFLANMSHEIRTPMNGIIGMIDLMMDTPLEN----KQQEYMYTIKKSSETLLNILNDI 908

Query: 645  LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRS 703
            LD+SK+E+GKM LH +P+ +   V +  +L    A  K   +       IP  + AD   
Sbjct: 909  LDLSKLEAGKMALHPKPMDIRFMVEKVYTLFLQQAKAKNNFLSYQVDPKIPYFLEADETR 968

Query: 704  VKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKP 759
            + QI  N++SNAI FT  G Q+ I  T  S  E    +++ V D+G+G++  +  +    
Sbjct: 969  LIQIISNLMSNAIKFTEDG-QVAIKFTLASKGELSVHLLVEVADSGLGISPEDQNRLFST 1027

Query: 760  FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
            F Q+ NS      GTGLGL ++K +     G   + S    G+     F     + P D
Sbjct: 1028 FTQLDNSSSKSYSGTGLGLAISKELCRLMNGDIGVISEIGHGSTFWFTF----EAQPTD 1082



 Score = 94.7 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 43/335 (12%), Positives = 95/335 (28%), Gaps = 23/335 (6%)

Query: 280 LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL----------TPETVDKC 329
                  +      +       Y++     +     +E                E ++  
Sbjct: 245 GQYRWIVEKGVPYLDARNHFRGYIASAVDITEQKMAEEEAKRIQLIKETKTRFQEALEGV 304

Query: 330 PI-PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388
            +    V + G +   N  +  +T Y   + +        L            +     +
Sbjct: 305 NLMGISVTTDGTVTMCNNYWQKVTGYTKEEIVGKNYF--DLFVQESERPERWNEFDKTLQ 362

Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
           +            TI     +   + F      N+  E      +  +  + R   + ++
Sbjct: 363 NGGF---WETSERTILTKTGDVRYIQFNSVILNNEKGELGGLTKVGKDITENRKVMKALK 419

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
                L  + + ++D I I +  G  L  N+   K  GY  +++ +      L Q+T   
Sbjct: 420 QSNEALQDLFDNSNDLIFICSMRGKFLFVNKTFKKKTGYTNKELKKMNILDLLHQDTKKS 479

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWK 565
               +  I+  +       IT+ S KE   L L   +               +HD ++  
Sbjct: 480 TLSTVKSIIQGET--VYNFITILSHKEGGNLYLEGSVTCRFEDGKPTAMRGILHDTTDKI 537

Query: 566 QEKNKLSHAKKIAEKESSHK--SDFLARVSHEIRT 598
           + +   +    IA      K  + F   +  E+  
Sbjct: 538 RAEKAQTLYYSIANLTVRSKNMNQFYQSIHRELGN 572



 Score = 58.1 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 30/257 (11%), Positives = 81/257 (31%), Gaps = 17/257 (6%)

Query: 336 YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIA 395
              G +   N + L   + +  D +  +             D  AI+  +    ++    
Sbjct: 54  DDDGMIIDVNETTLHTHQCQREDIVNKSVKA---FCDRYQYDFQAIQQGIQDAWEQGTGK 110

Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
              ++     NR N L +  +  +K     +             ++I+++ +     Q  
Sbjct: 111 VDLQV----LNRHNQLILRELVLKKMMYLSQQEVVVAFGKALYQSQISQKIISESESQFR 166

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           +I       + + N +      ++   +  G  VE+ + + +   +       + ++L  
Sbjct: 167 TIANHAPVLLRMSNPQHQFYFFSKQWLEFTGKTVEEEINEGWLKNVHPTDYEGVKNHL-- 224

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNKL 571
           + S + ++  E +        +   +         +      Y  +  DI+E K  + + 
Sbjct: 225 LKSFEKQKKYEVVYRLLRHTGQYRWIVEKGVPYLDARNHFRGYIASAVDITEQKMAEEEA 284

Query: 572 SHAKKIAEKESSHKSDF 588
               K  +     K+ F
Sbjct: 285 ----KRIQLIKETKTRF 297


>gi|120601684|ref|YP_966084.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4]
 gi|120561913|gb|ABM27657.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4]
          Length = 1000

 Score =  336 bits (861), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 113/657 (17%), Positives = 224/657 (34%), Gaps = 37/657 (5%)

Query: 175 FSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL 234
           F GF+  G+    R  +    L +  ++    L     G       +  IF  +     L
Sbjct: 195 FLGFQLHGLAE--RFRSAAEQLRESEERWNFALEGAGDGVWDWNLAQDTIFLSRKWKEML 252

Query: 235 RMKNKVSSLT------EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288
              +              +    D         L+               +         
Sbjct: 253 GFNDDELVNDFETWRSLAHPEDIDTALATINRCLSGGTDQYEHVYRMLRKDGTACWILDR 312

Query: 289 FGTL-QNNSKESFEYLSHRNHPSLSAYFDEGENLTPE----TVDKCPIPFFV-YSHGNLF 342
              + ++       ++      +     +E    + E    T+             G + 
Sbjct: 313 GRVVARDAEGNPVRFIGTHTDITAQKLSEESARASGENLAVTLSSIGDAVIATDRDGRVT 372

Query: 343 YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT 402
             NP    LT +     I        ++ +   +  +   PV         ++ S     
Sbjct: 373 LMNPVAEKLTGWTQSSAIGKPVSAVFVIISA-TTKQSLPSPVEEVLRTGRTVSLSNDTTL 431

Query: 403 IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
           +  +      +        +   E      +  +       KRK+     +  + L+   
Sbjct: 432 VSRSGREFQ-IADSAAPIHDASGEMSGVVMVYTDVTQQYRFKRKLAESEHRFRTALDEAP 490

Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522
             + + +  G +L  NR  S L GY    +        + +           E       
Sbjct: 491 FPVLLHDARGDVLMLNRQWSLLTGYEPSQV------PTIHRWKDLSAPEIDPESRFSGQA 544

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPF--SSCYSLTM--HDISEWKQEKNKLSHAKKIA 578
           ++ +        +  L +  + + +L       +   +   D++   +    L  +KK A
Sbjct: 545 RSTDGEQNIRCSDGTLRTWNVSMIELGAMPDGRHITMLAAVDVTVQSETMRALQRSKKAA 604

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
           E  ++ K++FLA +SHEIRTPL  I+G  +++ +       +    +Y +    S   + 
Sbjct: 605 ESANAAKTEFLANMSHEIRTPLNGIMGMMQLLVSTPL----DDEQKQYVSNAISSSGRLS 660

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-I 697
            +++D+LD+S+IE+G + L  E V+  E +     L  L     ++ +    +  +P+ I
Sbjct: 661 QLLSDVLDLSRIEAGGLVLRDECVTPSELLDAIKDLFTLGTRSSQVELALEISPGLPQHI 720

Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS-----NEEVILRVRDTGVGMTNYE 752
           L D   ++QI  N++ NA+ FT  G  I +     +      + +++ V DTG+G+    
Sbjct: 721 LLDGGRLRQILFNLVGNALKFTEKG-HIHVRLDELAIHGGMRQLLLISVEDTGIGIPQGA 779

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +     PF Q+  S   R  G GLGL + + +V A  G   I S   +GT I +  P
Sbjct: 780 MRDIFNPFYQVDGSHVRRQGGVGLGLSIVRRLVIAMGGALCIDSAEGEGTRIHLSLP 836



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/384 (9%), Positives = 83/384 (21%), Gaps = 32/384 (8%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIG--MRLCDVSDILHIDPNNH-IGDLLKRQ-N 141
            W+ +       +S +  + +G    +++        ++    ID     I   L    +
Sbjct: 232 VWDWNLAQDTIFLSRKWKEMLGFNDDELVNDFETWRSLAHPEDIDTALATINRCLSGGTD 291

Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL- 200
            +     +   +GT  ++      +            R  G               +   
Sbjct: 292 QYEHVYRMLRKDGTACWILDRGRVVA-RDAEGNPV--RFIGTHTDITAQKLSEESARASG 348

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK------------VSSLTEYYA 248
           +     L  I     + +++                               + S T   +
Sbjct: 349 ENLAVTLSSIGDAVIATDRDGRVTLMNPVAEKLTGWTQSSAIGKPVSAVFVIISATTKQS 408

Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
               V +  +     S  +                +           S     Y      
Sbjct: 409 LPSPVEEVLRTGRTVSLSNDTTLVSRSGREFQIADSAAPIHDASGEMSGVVMVYTDVTQQ 468

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
                   E E+     +D+ P P  ++   G++   N  + LLT Y+      I     
Sbjct: 469 YRFKRKLAESEHRFRTALDEAPFPVLLHDARGDVLMLNRQWSLLTGYEPSQVPTIHRWKD 528

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
               +    D  +        +D            I+ +            E        
Sbjct: 529 ---LSAPEIDPESRFSGQARSTDGE--------QNIRCSDGTLRTWNVSMIELGAMPDGR 577

Query: 428 MPQNGIEPEDVDTRINKRKMEIEV 451
                   +        R ++   
Sbjct: 578 HITMLAAVDVTVQSETMRALQRSK 601



 Score = 64.7 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 24/248 (9%), Positives = 63/248 (25%), Gaps = 6/248 (2%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP----NNHIGDLLKRQNTWY 144
            D  G +  ++    K  G      IG  +  V  I+         + + ++L+   T  
Sbjct: 365 TDRDGRVTLMNPVAEKLTGWTQSSAIGKPVSAVFVIISATTKQSLPSPVEEVLRTGRTVS 424

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
                  +  +     I  +A PI+  + E SG     +          +      + +F
Sbjct: 425 LSNDTTLVSRSGREFQIADSAAPIHDASGEMSGV--VMVYTDVTQQYRFKRKLAESEHRF 482

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
               +       +   + D+         L         T +        + +     + 
Sbjct: 483 RTALDEAPFPVLLHDARGDVLMLNRQWSLLTGYEPSQVPTIHRWKDLSAPEIDPESRFSG 542

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
           +  S   +++    +    T       L          +      ++ +        + +
Sbjct: 543 QARSTDGEQNIRCSDGTLRTWNVSMIELGAMPDGRHITMLAAVDVTVQSETMRALQRSKK 602

Query: 325 TVDKCPIP 332
             +     
Sbjct: 603 AAESANAA 610


>gi|85859338|ref|YP_461540.1| phosphate regulon sensor protein [Syntrophus aciditrophicus SB]
 gi|85722429|gb|ABC77372.1| phosphate regulon sensor protein [Syntrophus aciditrophicus SB]
          Length = 583

 Score =  336 bits (861), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 119/580 (20%), Positives = 217/580 (37%), Gaps = 37/580 (6%)

Query: 237 KNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS 296
             +V     +   +  +       LL   E +                       L ++ 
Sbjct: 29  TEQVRRNETWKIEESLLNYARLTALLPLPEMADQIGHLEKVSEARVTVIDAGGHVLADSQ 88

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPET-----VDKCPIPFFVYSHGNLFYANPSFLLL 351
            ++     H N P +     +G            VD   +   +    ++         L
Sbjct: 89  VDAPRMEDHMNRPEVQEARIKGSGKAIRQSHTLQVDMLYVALALRDGESIRGYVRMARSL 148

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411
            + +    ++   G         L     +  +  ++  R  +        I+       
Sbjct: 149 LEVEH--AVDRMYGSLYRAIGFALVPALLLAFLYTWKISRPVLEMRDYTRAIRRGELPGT 206

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471
            +     E      +      I     + R   R    E  +L S L +  +G+ I++  
Sbjct: 207 LLVDSADELGQVAED------INYLVTEYREKIRLAHEEKGKLESALASMVEGVVILDSR 260

Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
             I S N+A+  +   P  +I  K                          R+ + +    
Sbjct: 261 NRIESCNQAIEAILERPETEIREKTLLEAFLNADLQNALDRFRM-----ERKPVLQEIRL 315

Query: 532 STKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
             K+ +++ + I   K          L  HD++  K+ +                ++DF+
Sbjct: 316 GRKDPRVVDVSISAIKDLPDGVEKTMLVFHDVTRLKKLE--------------QIRTDFV 361

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
           A V+HEI+TPLTAIIGF + + +            ++   I  +   +  +V+DLL +S 
Sbjct: 362 ANVTHEIKTPLTAIIGFLQTLLDGALD--DRETARKFLQTIATNAERLSRLVDDLLTLSS 419

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709
           IE  + +LH EP+S+D  +   + +V   A  K IL+          ILAD     QI +
Sbjct: 420 IELNETSLHLEPLSVDVLIRSILPMVNADAKAKNILLNVDLPEAFLNILADRDRAAQILM 479

Query: 710 NILSNAIHFTPSGGQIIISTTHTSNEE-VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
           N+L NA+ FTP+GG + +S +       VI++V DTG+G+   E+ +  + F ++  ++ 
Sbjct: 480 NVLHNAVKFTPAGGIVTVSGSEEEKGNFVIIQVVDTGIGIPPREIPRLGERFYRVDKARS 539

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
               GTGLGL + K ++ A+ GK  I STP KGT++ + F
Sbjct: 540 RELGGTGLGLSIVKHLMAAHGGKMRIESTPGKGTIVSLFF 579


>gi|169831575|ref|YP_001717557.1| multi-sensor signal transduction histidine kinase [Candidatus
           Desulforudis audaxviator MP104C]
 gi|169638419|gb|ACA59925.1| multi-sensor signal transduction histidine kinase [Candidatus
           Desulforudis audaxviator MP104C]
          Length = 444

 Score =  336 bits (861), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 87/360 (24%), Positives = 162/360 (45%), Gaps = 26/360 (7%)

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
           E  ++ +IL++ +DG+  ++RE  ++  N  V + FG   E  L +     +       +
Sbjct: 110 EKNRMQAILDSMADGVIAVDRETRVILINPVVEEAFGLNEEASLGRTVLEVVRDY---EL 166

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN 569
           +    + L       L++     T E ++  + +   + P          DI+E +Q + 
Sbjct: 167 DRLFRQALDSGRP--LKQELRILTPEPRIFRVHLTPLRGP-QGGVVALFRDITERRQLE- 222

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
                          +++F+A  SHE+RTPLT+I GF E +++             +   
Sbjct: 223 -------------QMRTEFVANASHELRTPLTSIRGFIEALRDGAINE--PETARRFLGI 267

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I+   + + ++V+DLL ++ IE  +      PV L   V  A+      A +K + +R  
Sbjct: 268 IEEETDRLTELVDDLLKLATIEERRNMFGRLPVELPGVVQRAVDTFASRARQKGVALRVE 327

Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749
            A+ +P ++ D + + Q+ +N+L NA+ FT  G +I I         V + V DTG G+ 
Sbjct: 328 LADGLPPVIGDQKLLTQMFINLLDNAVKFTEKG-EITIRAAAAEGG-VEVEVLDTGAGIA 385

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
              L +  + F +   ++     GTGLGL + K +V+ + G+  + S P KGT   +  P
Sbjct: 386 PEHLPRIFERFFRGDKART--QGGTGLGLAIVKHIVEGHGGRIRVMSKPGKGTTFSMFLP 443



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/327 (9%), Positives = 73/327 (22%), Gaps = 25/327 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D    +  I+  + +  G      +G  + +V     +D        L        +  
Sbjct: 128 VDRETRVILINPVVEEAFGLNEEASLGRTVLEVVRDYELD--RLFRQALDSGRPLKQELR 185

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           +   E     V       P+              +            +        SH  
Sbjct: 186 ILTPEPRIFRV----HLTPLRGPQGGV-----VALFRDITERRQLEQMRTEFVANASHEL 236

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK-DDVLKTEKYPLLTSEES 267
                      E     +   P    R    +   T+      DD+LK        +   
Sbjct: 237 RTPLTSIRGFIEALRDGAINEPETARRFLGIIEEETDRLTELVDDLLKLATIEERRNMFG 296

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
            LP +                  T  + +++    L       L     + + LT   ++
Sbjct: 297 RLPVELPGVVQRA--------VDTFASRARQKGVALRVELADGLPPVIGDQKLLTQMFIN 348

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
                      G +     +         V+ ++   G++                    
Sbjct: 349 LLDNAVKFTEKGEITIRAAAAE---GGVEVEVLDTGAGIAPEHLPRIFERFFRGDKARTQ 405

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMT 414
                 +A    +  ++ +      M+
Sbjct: 406 GGTGLGLAIVKHI--VEGHGGRIRVMS 430


>gi|270308765|ref|YP_003330823.1| sensor histidine kinase/response regulator [Dehalococcoides sp. VS]
 gi|270154657|gb|ACZ62495.1| sensor histidine kinase/response regulator [Dehalococcoides sp. VS]
          Length = 1092

 Score =  336 bits (861), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 115/748 (15%), Positives = 219/748 (29%), Gaps = 47/748 (6%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTWYGKT 147
           DA   +       P   G  A + IG  + D++ +   D          LK   +    T
Sbjct: 231 DADFIVTRWEGAAPHIFGWGASETIGKSVYDLNIVYEPDAPIVEQTIKTLKEGISSQVVT 290

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                      +        +Y  N +         V  +             +K +  L
Sbjct: 291 LNRNYTKDGRVIHCTWYNSALYDSNNKMISMM--SQVEDSTEHERIETALAENEKHYREL 348

Query: 208 HEIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS- 264
           +E          +                  K +V           + L   K       
Sbjct: 349 YEQSPAGYQSLDQNGVFIEVNRLWLDTLGYQKEEVIGHWFGEFVASEDLDKFKKNFPRFV 408

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY----LSHRNHPSLSAYFDEGEN 320
           +             +                  E  +                   E + 
Sbjct: 409 KAGHTHVDFKMKRKDGQIIIVAFEGRIAYTPKGEFKQTHCIIQDITERYKAEEATREHKE 468

Query: 321 LTPETVDKCPIPFFVYS------HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
                 +       V+        G    AN + + L  Y   + ++++     +     
Sbjct: 469 RYEALFNSNNDAILVHQPQGELTPGTFIEANDAAITLLGYNREELLKLSPF--DITKNDN 526

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
           +S     + +   R              I  +R            K            I 
Sbjct: 527 MSSEPVKRTMESLRQTGK---VQNERIFIHKDRHEIPVEINARLFKYKGIDT---VITIV 580

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
            +    +  +  +     +  +  ++  D IAI++ +  IL  N A +   G+   D++ 
Sbjct: 581 HDITTRKQAEAALTHAAEEWRTTFDSIKDMIAIVDPKHTILRVNLAFANALGFKPNDLVG 640

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-- 552
           K     +               L     ++ E       K +  +               
Sbjct: 641 KHCYEVIHGMNQPHPMCPHARTLQSKHVESSEY---YDKKLKLWVEASSSPIFDNKGDLT 697

Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESS--HKSDFLARVSHEIRTPLTAIIGFSEVI 610
                + DIS+ KQE+ +    +  AE  S      +  A ++HEI  PLT +IGFSE++
Sbjct: 698 GSVHVIKDISKRKQEELQQQQLRNKAEMSSRLAAVGEMAAGIAHEINNPLTGVIGFSELL 757

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
             ++  P       +    I+       +I+  +L  ++    +       V +   +  
Sbjct: 758 LERKDLP---DDVKDNLQIINEGSQRAREIIKRMLTFAR----QSTPQMNRVDITSLIDH 810

Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT---PSGGQIII 727
            + L         I +   +  N+P ++AD   ++Q+ LN++ NA H        G + I
Sbjct: 811 TLELRNYVLATANIKVIKDYDANLPWVIADPGQLQQVFLNLIVNAEHAMKKAHDKGILTI 870

Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
            T  +  + + + V D G GM +  L+K  +PF          GEGTGLGL L+  ++  
Sbjct: 871 QTK-SLGDSIRISVTDDGPGMPDEVLKKLFQPFFTTKEP----GEGTGLGLSLSLGIIQE 925

Query: 788 NMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
           + G     S   KGT   +  P    ++
Sbjct: 926 HNGTIRAESKAGKGTTFIVELPAAADAY 953



 Score = 85.8 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 28/299 (9%), Positives = 79/299 (26%), Gaps = 19/299 (6%)

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSVDDIEIAGGLST 368
           +      E            P+    +    +      +   +  + + + I  +     
Sbjct: 204 TALEAIKESSEKLRLHTQNSPLATIEWDADFIVTRWEGAAPHIFGWGASETIGKSVYDLN 263

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
           ++  P       ++  +    +               +        +      +   + +
Sbjct: 264 IVYEPDAP---IVEQTIKTLKEGISSQVVTLNRNYTKDGRVIHCTWYNSA-LYDSNNKMI 319

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
                  +  +    +  +         + E +  G   +++ G+ +  NR      GY 
Sbjct: 320 SMMSQVEDSTEHERIETALAENEKHYRELYEQSPAGYQSLDQNGVFIEVNRLWLDTLGYQ 379

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL----RII 544
            E+++   F  F+               +                K+ +++ +    RI 
Sbjct: 380 KEEVIGHWFGEFVASEDLDKFKKNFPRFVKAGHTHV---DFKMKRKDGQIIIVAFEGRIA 436

Query: 545 IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH----EIRTP 599
                        + DI+E  + +      K+  E   +  +D  A + H    E+ TP
Sbjct: 437 YTPKGEFKQTHCIIQDITERYKAEEATREHKERYEALFNSNND--AILVHQPQGEL-TP 492



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 55/549 (10%), Positives = 138/549 (25%), Gaps = 44/549 (8%)

Query: 64  NTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD 123
            T   ++E  +          +  ++D +G   E++     T+G    ++IG    +   
Sbjct: 335 ETALAENEKHYRELYEQSPAGYQ-SLDQNGVFIEVNRLWLDTLGYQKEEVIGHWFGEFVA 393

Query: 124 ILHIDP-NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFG 182
              +D    +    +K  +T          +G  + V  +      Y+   EF   +   
Sbjct: 394 SEDLDKFKKNFPRFVKAGHTHVDFKMK-RKDGQIIIVAFE--GRIAYTPKGEFK--QTHC 448

Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS- 241
           I+             +   +++  L         V + + ++        +      +  
Sbjct: 449 IIQDITERYKAEEATREHKERYEALFNSNNDAILVHQPQGELTPGTFIEANDAAITLLGY 508

Query: 242 -SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF 300
                      D+ K +       + +    ++     N   +  K         +   F
Sbjct: 509 NREELLKLSPFDITKNDNMSSEPVKRTMESLRQTGKVQNERIFIHKDRHEIPVEINARLF 568

Query: 301 EYLS----------HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFL 349
           +Y                    A           T D       +      +   N +F 
Sbjct: 569 KYKGIDTVITIVHDITTRKQAEAALTHAAEEWRTTFDSIKDMIAIVDPKHTILRVNLAFA 628

Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
               +K  D +              +   N   P+  +              +  ++++ 
Sbjct: 629 NALGFKPNDLVGK-------HCYEVIHGMNQPHPMCPHARTLQSKHVE---SSEYYDKKL 678

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTR--INKRKMEIEVMQLCSILEATSDGIAI 467
            L +        +   +      +  +    +    +++      ++ S L A  +    
Sbjct: 679 KLWVEASSSPIFDNKGDLTGSVHVIKDISKRKQEELQQQQLRNKAEMSSRLAAVGEM--- 735

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
               GI    N  ++ + G+    + RK        +        + E            
Sbjct: 736 --AAGIAHEINNPLTGVIGFSELLLERKDL-----PDDVKDNLQIINEGSQRAREIIKRM 788

Query: 528 ITLGS--TKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
           +T     T +   + +  +I        Y L   +I   K     L        +     
Sbjct: 789 LTFARQSTPQMNRVDITSLIDHTLELRNYVLATANIKVIKDYDANLPWVIADPGQLQQVF 848

Query: 586 SDFLARVSH 594
            + +    H
Sbjct: 849 LNLIVNAEH 857



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/150 (10%), Positives = 50/150 (33%), Gaps = 7/150 (4%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +     ++    +L    + +       + + I+     A   +FG+   + + K     
Sbjct: 203 KTALEAIKESSEKLRLHTQNSPLATIEWDADFIVTRWEGAAPHIFGWGASETIGKSVYDL 262

Query: 501 --LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT- 557
             + +    ++   +  +      Q +       TK+ +++        L  S+   ++ 
Sbjct: 263 NIVYEPDAPIVEQTIKTLKEGISSQVVTL-NRNYTKDGRVIHCTWYNSALYDSNNKMISM 321

Query: 558 ---MHDISEWKQEKNKLSHAKKIAEKESSH 584
              + D +E ++ +  L+  +K   +    
Sbjct: 322 MSQVEDSTEHERIETALAENEKHYRELYEQ 351


>gi|217970145|ref|YP_002355379.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T]
 gi|217507472|gb|ACK54483.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T]
          Length = 833

 Score =  336 bits (861), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 96/396 (24%), Positives = 168/396 (42%), Gaps = 16/396 (4%)

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
           +  +     +     R +      L  +      G+  ++  G  +  +    +L GY  
Sbjct: 18  EAELSRLRAERDAALRSLARARRHLDLVSANAGAGVWYMDLRGGSIRLDERWRRLLGYDG 77

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI---IIK 546
            D     +   ++    + +   L   L       L        ++     L +      
Sbjct: 78  GDAG--DWMALVDDEGRAALQQALRAHL-GGEAAELRAEIRIRAQDASWHWLEVCGNASG 134

Query: 547 KLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
           +           T  D++E K  + +L  AK+ AE  S  K DFLA +SHEIRTP+  II
Sbjct: 135 RGEDGRWARVEGTYRDVTERKLREIELLQAKEAAEAASRAKGDFLANMSHEIRTPMNGII 194

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           G ++++ +            EY   +  S   +L I+ND+LD S+IE+G++++     SL
Sbjct: 195 GMTDLLLDSTIAG----EQREYLQTVKSSAEALLTIINDILDFSRIEAGRLSVEQIDFSL 250

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGG 723
              VSE    + L A++K + +    A ++P +   D   ++QI +N++ NAI FT  G 
Sbjct: 251 HSVVSETCRALALRASQKGLELYYDVAPDVPSVLRGDPTRLRQILVNLIGNAIKFTEHGE 310

Query: 724 -QIIISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
            ++ +     +     +   VRDTG G+   +LE     F Q  NS   +  GTGLGL +
Sbjct: 311 VEVRVRCVQRNGGAASIEFLVRDTGCGIAPDKLEAIFGAFSQADNSTTRKYGGTGLGLAI 370

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
            + + +   G+  + S P  G+  E+  PL   + P
Sbjct: 371 CRQLTELMGGRIGVDSVPGAGSRFEVTLPLRAVADP 406


>gi|170077617|ref|YP_001734255.1| two-component hybrid sensor kinase/response regulator
           [Synechococcus sp. PCC 7002]
 gi|169885286|gb|ACA98999.1| two-component hybrid sensor kinase and response regulator with PAS
           and HAMP domains [Synechococcus sp. PCC 7002]
          Length = 1280

 Score =  336 bits (861), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 99/404 (24%), Positives = 182/404 (45%), Gaps = 21/404 (5%)

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468
                         +         +  E     + ++++     +    + AT+DGI   
Sbjct: 547 RQQFQAIQATTLNLEEQVETRTKALSEEVRQRELIEQQLRQSEERYELAIAATNDGIWDW 606

Query: 469 NREGIILSTNRAVSKLFGYPVEDILRK-----PFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
           +     +  +R+  +L GY   ++  +      +   +  +  +     +T  L   L  
Sbjct: 607 DLRSDQVYRSRSWFRLLGYKESNLQPRITGRQMWADLVHPDDLAQAQAAMTNHL-QGLTA 665

Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAE 579
           + + +      + +   +    K L            T+ DI++  + + +L  AK+ AE
Sbjct: 666 SYQNVHRLRHCDGQYRWILSKAKCLKDEQDNPYRIVGTITDITDKVEAEIQLKLAKEDAE 725

Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639
           + +  KS+FLA +SHEIRTP+ A+IG +E++++         +  E+ + I  SG+ +L 
Sbjct: 726 QANRAKSEFLATMSHEIRTPMNAVIGMAELLRDTDLTA----QQQEFIDIIRNSGSNLLA 781

Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-IL 698
           I+ND+LD SKIESGK  L  +P +L   +   + L+   A  K I +      ++P  ++
Sbjct: 782 IINDILDFSKIESGKFELELQPFNLQTCLENCLDLMSTRAIAKPIYLSYILDPDVPHHLM 841

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQI----IISTTHTSNEEVILRVR--DTGVGMTNYE 752
            D+   +QI LN+L NA+ FT  G        + T     ++V LR    DTG+G+   +
Sbjct: 842 GDVTRFQQIMLNLLGNAVKFTNRGDVSLWVQKVPTATGDGDQVCLRFAILDTGIGIPAQQ 901

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           + +  +PF Q   S   R  GTGLGL ++K +V+   GK ++ S
Sbjct: 902 MTRLFQPFSQGDASTSRRYGGTGLGLVISKRLVELMGGKLWVES 945



 Score = 45.8 bits (107), Expect = 0.030,   Method: Composition-based stats.
 Identities = 14/148 (9%), Positives = 32/148 (21%), Gaps = 7/148 (4%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYA----FKMIGMR-LCDVSDILHIDPNNHIGDLLKRQ 140
            W+ D        S    + +G        ++ G +   D+     +           + 
Sbjct: 603 IWDWDLRSDQVYRSRSWFRLLGYKESNLQPRITGRQMWADLVHPDDLAQAQAAMTNHLQG 662

Query: 141 NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
            T   +           Y  I   A  +         +R  G +       +     K  
Sbjct: 663 LTASYQNVHRLRHCDGQYRWILSKAKCLKDEQDNP--YRIVGTITDITDKVEAEIQLKLA 720

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228
            +     +  K    +    +       
Sbjct: 721 KEDAEQANRAKSEFLATMSHEIRTPMNA 748


>gi|34556655|ref|NP_906470.1| hybrid sensory histidine kinase [Wolinella succinogenes DSM 1740]
 gi|34482369|emb|CAE09370.1| HYBRID SENSORY HISTIDINE KINASE [Wolinella succinogenes]
          Length = 538

 Score =  336 bits (861), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 108/382 (28%), Positives = 175/382 (45%), Gaps = 18/382 (4%)

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPF 497
             +   ++ +  + +    ++A+   I  I +  G I+  N  + ++ GY  E++L  P 
Sbjct: 126 AEQEETKRSQRLLEEYKKAVDAS--AILSISDLSGNIIFANEKLCEITGYTREELLGHPH 183

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---- 553
           ++F   +TP  +   L   +        + +     K  +   +   +  L   +     
Sbjct: 184 SMFRHPDTPKEVFERLWSTILEGK--IWKGMLKNRKKNGEPYYVDATVVPLMDENNQITQ 241

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
           +    ++I+   + +N L  A K AE+    K  FLA +SHE+RTPL  IIGF  ++  +
Sbjct: 242 FLGLCYEITSLIRAQNALRVALKRAEEADRVKGVFLANMSHEMRTPLNGIIGFGRLLLEE 301

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
                 N    EY   ID+SG  +L I+ND+LD+SKIESGK  L   P+ L E +     
Sbjct: 302 NL----NQEQREYVEIIDKSGEHLLGIINDILDLSKIESGKFELESLPMKLSEELRAVAD 357

Query: 674 LVQLYANEKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT-H 731
             ++ A EK + +   F       I  D+  +KQ+  N+L NAI FTP GG++ +     
Sbjct: 358 FCEVKAREKGVKLLCLFKEIEGLIIQGDVMRLKQVTANLLGNAIKFTPEGGEVRLGVEVL 417

Query: 732 TSNEEVI---LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
              EE I     V DTG+G+    LEK  +PF Q  +S      GTGLGL +++ +V   
Sbjct: 418 EEREEAIALDFSVSDTGIGIAPEYLEKIFRPFEQAESSTARNYGGTGLGLSISQELVRLM 477

Query: 789 MGKFYIFSTPAKGTLIEIIFPL 810
            G+    S   KG+       L
Sbjct: 478 GGEMRCQSEEGKGSRFSFTLTL 499



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 38/119 (31%), Gaps = 5/119 (4%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGKTT 148
           D  G +   +E+L +  G    +++G                  +   +     W G   
Sbjct: 155 DLSGNIIFANEKLCEITGYTREELLGHPHSMFRHPDTPKEVFERLWSTILEGKIWKGMLK 214

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFG--IVHVNRVDNDPRALGKRLDKKFS 205
                G   YV   +  +P+   N + + F G    I  + R  N  R   KR ++   
Sbjct: 215 NRKKNGEPYYVDATV--VPLMDENNQITQFLGLCYEITSLIRAQNALRVALKRAEEADR 271


>gi|91778793|ref|YP_554001.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia xenovorans
           LB400]
 gi|91691453|gb|ABE34651.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia xenovorans
           LB400]
          Length = 776

 Score =  335 bits (860), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 112/615 (18%), Positives = 218/615 (35%), Gaps = 25/615 (4%)

Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270
            +    +      +F Q    P L+M+  V+ +     H+D        P+L +      
Sbjct: 52  ARHIQDLLSAGGKVFYQTHWAPLLQMQGSVAEVKLNMLHRDG----HMLPMLLNAARRRH 107

Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330
            +  +  + +     +  +   +          S   H        E  ++    +    
Sbjct: 108 GEVAYLEVAVLIVADRHKYEQ-ELLLARRNAEASVAAHQLAQKELQESRDVLSLAMRGAR 166

Query: 331 IPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388
           +  + +    G   + +     L  Y         GG   L+    L      + V    
Sbjct: 167 MGAWSHEPKSGRF-WWSRELEALAGYAEGRFASTPGGFFELIHPGDL--IALNEAVDHAV 223

Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
                  A  R      +      M        +     +   G+  +  + +  +  + 
Sbjct: 224 ETGDDYVAEFRFLHASGD---WCWMEGRGRAAYDHHGVPLMIYGLGIDITERKEAQTVLL 280

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
            +     +I E  SD I I +  G I   N    ++ GY + +IL KP  +FL       
Sbjct: 281 RQ----AAIFEHLSDAIVITDLRGNITDFNVGGERMLGYRMREILGKPVAMFLPPEQAPG 336

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQ 566
           +       L+ +     E   +       +    +                  DI+E ++
Sbjct: 337 IRREALAALAAEGTWRGELPFVRHDGSRGVCETVVKPLANARGDIYGAVSINRDITERRR 396

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
            + +L+       K    K +FLA ++HE+R PL  +    E+++ + F         + 
Sbjct: 397 AEQQLTRLNLELSKADRRKDEFLATLAHELRNPLAPMRNVLEILRLKEFADPQLSWSRDV 456

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
            +   R    +  +V+DLL++S+I  GK+ L  + + L  A+  A+   +         +
Sbjct: 457 FD---RQLQHMTHLVDDLLEVSRITQGKLELRKQRLELARAMQSAMEAARPTVQASSHHL 513

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
             +       ++AD   + Q+ LN+L+NA  +TP GG I +       +E ++ VRD+G+
Sbjct: 514 SVTLPREPLYLIADPTRLSQMILNLLNNAAKYTPPGGSISL-AAEREGDEAVIVVRDSGI 572

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIE 805
           G+    L+   + F Q+  +      G G+GL L + + + + G    FS  P KG+   
Sbjct: 573 GIPGEHLDSVFEMFSQLAPALDRSQGGLGIGLALVRGLAELHGGTVAAFSEGPGKGSEFM 632

Query: 806 IIFPLYDTS-HPHDC 819
           I  PL  T+  P D 
Sbjct: 633 IRLPLTATALQPSDS 647



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/391 (9%), Positives = 98/391 (25%), Gaps = 32/391 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIG-MRLCDVSDILH-----------IDPNNHIGDL 136
            D +G +  ++      +G  A ++ G   + D+                +     + ++
Sbjct: 25  TDTNGRILRVNATFCGWLGYEAAELAGARHIQDLLSAGGKVFYQTHWAPLLQMQGSVAEV 84

Query: 137 ----LKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSR---NREFSGFRGFGIVHVNRV 189
               L R                     +++A L +  R    +E    R      V   
Sbjct: 85  KLNMLHRDGHMLPMLLNAARRRHGEVAYLEVAVLIVADRHKYEQELLLARRNAEASVAAH 144

Query: 190 DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL-----RMKNKVSSLT 244
               + L +  D     +   + G  S E +    +  +           R  +      
Sbjct: 145 QLAQKELQESRDVLSLAMRGARMGAWSHEPKSGRFWWSRELEALAGYAEGRFASTPGGFF 204

Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
           E     D +   E              +  F   + +    +       ++         
Sbjct: 205 ELIHPGDLIALNEAVDHAVETGDDYVAEFRFLHASGDWCWMEGRGRAAYDHHGVPLMIYG 264

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIA 363
                +                +       +    GN+   N     +  Y+  + +   
Sbjct: 265 LGIDITERKEAQTVLLRQAAIFEHLSDAIVITDLRGNITDFNVGGERMLGYRMREILGKP 324

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
                +   P+ +     + +    ++ T       L  ++ +    +  T      AN 
Sbjct: 325 V---AMFLPPEQAPGIRREALAALAAEGT---WRGELPFVRHDGSRGVCETV-VKPLANA 377

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
             +      I  +  + R  ++++    ++L
Sbjct: 378 RGDIYGAVSINRDITERRRAEQQLTRLNLEL 408



 Score = 55.4 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/132 (12%), Positives = 41/132 (31%), Gaps = 4/132 (3%)

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           ++ E  + G+ + +  G IL  N       GY   ++        L      V       
Sbjct: 13  ALFEHAACGLLVTDTNGRILRVNATFCGWLGYEAAELAGARHIQDLLSAGGKVFYQTHWA 72

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY---SLTMHDISEWKQEKNKLS 572
            L        E       ++  +L + +   +             +  +++  + + +L 
Sbjct: 73  PLLQMQGSVAEVKLNMLHRDGHMLPMLLNAARRRHGEVAYLEVAVLI-VADRHKYEQELL 131

Query: 573 HAKKIAEKESSH 584
            A++ AE   + 
Sbjct: 132 LARRNAEASVAA 143


>gi|283853667|ref|ZP_06370899.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283570938|gb|EFC18966.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 676

 Score =  335 bits (860), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 113/533 (21%), Positives = 201/533 (37%), Gaps = 41/533 (7%)

Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPS 347
            G                   +  A            +        FV   G +   N  
Sbjct: 15  AGRPARRLGRLTGRTGATCPAAHMAEAASRLTRLSSIIAALDQGIAFVAPDGVVVEINDR 74

Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
           +L L        +     +  L    +  D  A   + L+R        S        + 
Sbjct: 75  YLTLLDLPREAVLGQPLAILDL----ETEDYQAGAFLDLFRRGAAHAPVSFDRRLCDRD- 129

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
                      +   +            +       +  +E E   L  ++      I I
Sbjct: 130 ------VTAKLQPVLEDGVFTGLIVSLIDVTPLVEARLSVEREKSFLEQVITIAGAAICI 183

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
           +NR+ ++++ N   + + GY  +  L +     L ++ PS                  ++
Sbjct: 184 VNRDDVVVTINDEFTAITGYSRDQALGRRRGELLRESPPSPCPA------RPGDASVQKR 237

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAEKESS 583
            +   T++ + +++      +  S         +  D+S+  +        +  AE+ S 
Sbjct: 238 QSQILTRDGRRVTILKNAAPIRDSQGLATGGIESFADVSDLIRA-------RVEAEEASR 290

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
            KS FLA +SHEIRTPL AI+G S+++         +P+  E    +  +G  +L ++ND
Sbjct: 291 MKSAFLANMSHEIRTPLNAIMGLSQLLLKTG----PSPQQRECLETMRSAGEGLLVVLND 346

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLR 702
           +LD S+IE G++ +   PV LD  + E   ++   A+E+ + +       +PR+ + D  
Sbjct: 347 VLDFSRIEVGRLEIRPVPVDLDRLLEEMRRIMAPAADERGLTLAIERDPKLPRVAVCDPV 406

Query: 703 SVKQIALNILSNAIHFTPSGGQIIIST------THTSNEEVILRVRDTGVGMTNYELEKA 756
            +KQI LN+LSNAI FTPSG  ++ +          +   V  RVRDTG G+     E+ 
Sbjct: 407 RLKQILLNLLSNAIKFTPSGRVVLAAALPYPPKAEDAPTPVQFRVRDTGPGIPEELRERI 466

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK-FYIFSTPAKGTLIEIIF 808
            +PF Q  ++      GTGLGL ++  +V    G    + S P KG+      
Sbjct: 467 FEPFVQADDAVARNHGGTGLGLSISDRLVRLLGGAGLSVDSQPGKGSTFHFTL 519



 Score = 48.5 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/344 (8%), Positives = 73/344 (21%), Gaps = 22/344 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ++    +  I++E     G    + +G R  ++       P        +  +    K  
Sbjct: 184 VNRDDVVVTINDEFTAITGYSRDQALGRRRGELLRESPPSPCPA-----RPGDASVQKRQ 238

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNR-EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
              +      V I   A PI         G   F  V  + +        +    K + L
Sbjct: 239 SQILTRDGRRVTILKNAAPIRDSQGLATGGIESFADV--SDLIRARVEAEEASRMKSAFL 296

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
             +     +       +            + +             V+  +       E  
Sbjct: 297 ANMSHEIRTPLNAIMGLSQLLLKTGPSPQQRECLETMRSAGEGLLVVLNDVLDFSRIEVG 356

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
            L  +     ++      ++      +    +         P ++             ++
Sbjct: 357 RLEIRPVPVDLDRLLEEMRRIMAPAADERGLTLAIERDPKLPRVAVCDPVRLKQI--LLN 414

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
                      G +  A      L      +D             P + +    +     
Sbjct: 415 LLSNAIKFTPSGRVVLA----AALPYPPKAEDAPTPVQFRVRDTGPGIPEELRERIF--- 467

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
                     A     + +    L ++             +  +
Sbjct: 468 -----EPFVQADDAVARNHGGTGLGLSISDRLVRLLGGAGLSVD 506



 Score = 47.3 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 48/473 (10%), Positives = 110/473 (23%), Gaps = 38/473 (8%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150
             G + EI++     +      ++G  L  +             DL +R       +   
Sbjct: 64  PDGVVVEINDRYLTLLDLPREAVLGQPLAILDLETEDYQAGAFLDLFRRGAAHAPVS--- 120

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
             +       +     P+   +  F+G     ++ V  +     ++ +        +   
Sbjct: 121 -FDRRLCDRDVTAKLQPVL-EDGVFTGLI-VSLIDVTPLVEARLSVEREKSFLEQVITIA 177

Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270
                 V ++   +                +                      S   + P
Sbjct: 178 GAAICIVNRDDVVVTINDEFTAITGYSRDQA--------LGRRRGELLRESPPSPCPARP 229

Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330
                         + Q                  R+   L+    E      + +    
Sbjct: 230 GDASVQK------RQSQILTRDGRRVTILKNAAPIRDSQGLATGGIESFADVSDLIRARV 283

Query: 331 IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390
                    + F AN S  + T       +    GLS LL     S         +  + 
Sbjct: 284 EAEEASRMKSAFLANMSHEIRTP------LNAIMGLSQLLLKTGPSPQQRECLETMRSAG 337

Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK---- 446
              +     +          L +  +P +      E         ++    +   +    
Sbjct: 338 EGLLVVLNDVLDFSRIEVGRLEIRPVPVDLDRLLEEMRRIMAPAADERGLTLAIERDPKL 397

Query: 447 ---MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
                 + ++L  IL             G ++           YP +         F  +
Sbjct: 398 PRVAVCDPVRLKQILLNLLSNAIKFTPSGRVVLA-----AALPYPPKAEDAPTPVQFRVR 452

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556
           +T   +   L E +     Q  + +          LS+   + +L   +  S+
Sbjct: 453 DTGPGIPEELRERIFEPFVQADDAVARNHGGTGLGLSISDRLVRLLGGAGLSV 505


>gi|255533254|ref|YP_003093626.1| PAS sensor protein [Pedobacter heparinus DSM 2366]
 gi|255346238|gb|ACU05564.1| PAS sensor protein [Pedobacter heparinus DSM 2366]
          Length = 713

 Score =  335 bits (860), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 112/746 (15%), Positives = 257/746 (34%), Gaps = 77/746 (10%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD--ILHIDPNN------HIGDLLKRQ 140
           +    Y+   S+   +        + G  + +         D +        +  +L+ +
Sbjct: 25  LSPDLYILTASDLYLQATKTTRDAIKGKHIFEAFPDNPDLPDADGVQNINASLQVVLRTK 84

Query: 141 NTWYGKTTLWPIE-----GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA 195
                    + +      G  +    D    P+       S      I+ +     D   
Sbjct: 85  KPDQMPIQRYDVPDMENPGKFIRRYWDPCHSPVLDSEGNIS-----YIIQLATNVTDKIL 139

Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255
             + L +      E  +  S++  E            ++ ++     LT      +  + 
Sbjct: 140 AERALHQSHLENLETTEQVSALNAELL--------ATNVELRETQRQLTLLNEQLEGRVA 191

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
                L  + E      E+    N      +Q    +                 +    +
Sbjct: 192 KRTDELRQAVEEQAAVNEEMEATNEELIQIQQNLEQINRELTAGESRFRMAVESTGLGTW 251

Query: 316 DEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
           D                            +    ++        ++       +    + 
Sbjct: 252 DYIPATGE------------------LQWSKECRMIFGLDGDQPVDFETYTRHIFPEDRQ 293

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
              + I   +  +              I+++ +    +      +  Q  +     G   
Sbjct: 294 FVASRINSSLQSKFSGR---YEITHRIIRFDNKEVRWVKAQGTVQF-QAGKASRFLGTVL 349

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
           +  + +    ++E +  +L +I+  ++D I     E +I S N +  ++FGY   +I+ +
Sbjct: 350 DITELK----QVEEKSARLAAIVATSNDAIISKTLESVITSWNDSAERMFGYTSTEIIGE 405

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-- 553
                +  +        LT + + +  +     T   TK+ +L+ + + I  +  S    
Sbjct: 406 TIYKLIPADRQDEEPMILTRLKAGE--RVEHFETKRQTKDGRLIDVSLTISPIKDSHGNI 463

Query: 554 --YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
             +S    DISE KQ   +              K+DF+A VSHEI+TPLT++    ++++
Sbjct: 464 TGFSKIARDISERKQNDIR--------------KNDFIAMVSHEIKTPLTSMSAILQMLQ 509

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
             +F    +    +  +  +     +  +++  L+IS++ESGK+ ++ +  ++ E + E 
Sbjct: 510 R-KFAESEDVLVSQLLDRANLQVKKMNKMISGFLNISRLESGKIQINRQVFNICELIKEV 568

Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
           ++ + L      I IR    + +  ++AD   +  +  N+L NAI ++P G ++ I   +
Sbjct: 569 VAEINLTGINHIINIR-ECEDAV--VMADREKIDSVLSNLLGNAIKYSPKGSEVTIDC-Y 624

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
             +  V +RV D G+G++  +       + ++ +    +  G G+GL L+  +V  + GK
Sbjct: 625 KQDSYVCIRVSDRGLGISEADCGHVFDRYYRVESDPISQASGFGIGLYLSAEIVHRHDGK 684

Query: 792 FYIFSTPAKGTLIEIIFPLYDTSHPH 817
            ++ S   KG+      PL     P 
Sbjct: 685 IWVESEIGKGSQFYFSLPLEGIRKPE 710


>gi|253682114|ref|ZP_04862911.1| sensory transduction histidine kinase [Clostridium botulinum D str.
           1873]
 gi|253561826|gb|EES91278.1| sensory transduction histidine kinase [Clostridium botulinum D str.
           1873]
          Length = 551

 Score =  335 bits (860), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 91/506 (17%), Positives = 195/506 (38%), Gaps = 22/506 (4%)

Query: 318 GENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
            E      +   P   F      + +AN   + L +     DI        +        
Sbjct: 18  DEEFYKNLIRILPEAVFFEKDKKIIFANDEGIKLLEGIERSDIIGKKIDEFIYSNFIKIL 77

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
           +   +              +     I       + +        N+  E +    I  + 
Sbjct: 78  DLNKE------KKLNSDNENVIEQKIITLNNKVIDVEVKSIYLFNKNREKIKVV-IVRDI 130

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRKP 496
            + +  ++ +         + E    G++I N +  +   N+    + G    +D++   
Sbjct: 131 TERKRYEKALCESEYLHRKLTELLPVGVSIHNYDM-VEFANKTCLNMLGIKDEKDLINNS 189

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--Y 554
              F+ ++        L  I     +   E       K+ +++ +          +    
Sbjct: 190 IFKFIHESKIKDSKERLKTIFEYGGKTLPEFYNKFIRKDGQIIDVETWSTTFYDENKLKI 249

Query: 555 SLTMHDISEWKQEKN------KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG--- 605
                D++E+ Q +       +         + +  +++F A +SHE++TPL  I+    
Sbjct: 250 LSVFRDVTEYLQIEKIKQKSNENKKLLDKEREFNKIRTEFFANLSHELKTPLNVILSSQQ 309

Query: 606 -FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
             +  ++N  F  +   +  ++   + ++ N +L ++++L+DI++I+SG  +L+ E  ++
Sbjct: 310 LLALYLRNGEFAGIDYEKIEKHLKTLKQNSNRLLRLIDNLIDITRIDSGFFSLNLENHNI 369

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724
              + +    V  Y   K I +           L D   +++I LN+LSNA+ FTP GG+
Sbjct: 370 VTIIEDITLAVVEYIKNKDIKLIFDTDIEEKLTLCDEDKIERIILNLLSNAVKFTPKGGK 429

Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
           I ++  H   + + + VRD G+G+   ++      F Q+  S     EG+G+GL L KA+
Sbjct: 430 IKVNI-HDDGDSLRITVRDNGIGIPKDKIHIIFDRFRQVDKSFTRISEGSGIGLSLVKAL 488

Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPL 810
           ++ + G   + S   KG+   I FP+
Sbjct: 489 IEMHNGTISVESEYGKGSEFIIYFPI 514



 Score = 41.6 bits (96), Expect = 0.62,   Method: Composition-based stats.
 Identities = 19/171 (11%), Positives = 46/171 (26%), Gaps = 13/171 (7%)

Query: 293 QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLT 352
                +                  E E L  +  +  P+   ++++  + +AN + L + 
Sbjct: 118 NREKIKVVIVRDITERKRYEKALCESEYLHRKLTELLPVGVSIHNYDMVEFANKTCLNML 177

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM-------------LYRSDRTCIAASAR 399
             K   D+        + ++        +K +                R D   I     
Sbjct: 178 GIKDEKDLINNSIFKFIHESKIKDSKERLKTIFEYGGKTLPEFYNKFIRKDGQIIDVETW 237

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450
             T     +  +   F    +  Q  +   ++    + +D      K+  E
Sbjct: 238 STTFYDENKLKILSVFRDVTEYLQIEKIKQKSNENKKLLDKEREFNKIRTE 288


>gi|16264090|ref|NP_436882.1| putative sensory histidine kinase protein [Sinorhizobium meliloti
           1021]
 gi|15140215|emb|CAC48742.1| putative two-component sensor histidine kinase [Sinorhizobium
           meliloti 1021]
          Length = 917

 Score =  335 bits (860), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 117/638 (18%), Positives = 224/638 (35%), Gaps = 27/638 (4%)

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244
            +  +    R          S +        ++ +    +   +                
Sbjct: 23  RITDLPISARVAALTAAGLISLVLSSLFLTQALYRSAERMAETRELFDRAASAASAHVAF 82

Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY-TKKQYFGTLQNNSKESFEYL 303
               +    L      L+ S+ ++   +E              +    ++       E  
Sbjct: 83  GDLRYWLTDLSVSL--LMNSQRNADEARERLQEQLAGLAKHAPEAVEAIRTEVDAYVETA 140

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIA 363
                         G  L  +                L     +     + + V   E  
Sbjct: 141 LQAADSYTQDNRIVGNALLAKARTHS--GKVDADLNRLVEQVKAEAEAARNEVVVQTEKT 198

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
              + +L    +   + +  ++L            RL+ +  +         IP E  ++
Sbjct: 199 ATTAAILVGGVVLIGSLLTLLVLRSIVGPLR----RLNRVIGDLTEGRYDVDIPEEGGDE 254

Query: 424 FPENMPQNGIEPEDV-DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
                    +  E   + +  + + E +   + + LE  SDG  + + E  IL  N    
Sbjct: 255 LGAMARTLSLFRESAIEKKKLEDEAERQRRTIAAALEVISDGFVLYDSEDRILVANSKYC 314

Query: 483 KLF-GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE----- 536
           ++F  +    +  + F   +EQN                     E++ L           
Sbjct: 315 EIFPSHKPNTLRGRSFREIVEQNLEMGQVDLEG---KSPQEWVDERVRLHRDPAGLVDEK 371

Query: 537 --KLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
                 +RI  +K+P          DI++ KQ + +L  AK  AE  +  KS FLA +SH
Sbjct: 372 RFGDKWVRISKRKIPD-GGTVAVYTDITQLKQRQVELERAKSHAESANEAKSRFLASMSH 430

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           E+RTPL AIIG+SE++  +      +   +   + I  +G  +L ++ND+LD+SKIE+ K
Sbjct: 431 ELRTPLNAIIGYSEMLIEEARDHE-DEELVPDLDKIASAGRHLLSLINDILDLSKIEANK 489

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714
           M +  E  S+ + + +  + V              F  ++  + +D   ++Q   N+LSN
Sbjct: 490 MEVFLETFSVADLLRDVAATVAPLMARNGNEFTQDFEADLGEMHSDQTKLRQNLFNLLSN 549

Query: 715 AIHFTPSGGQIIISTTHT---SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           A  FT +GG++ +          + ++ +V DTG+GM+  + E+    F Q   S     
Sbjct: 550 AAKFT-NGGRVTLRVRREQRPDRDWLVFQVTDTGIGMSPEQQERLFNAFTQADASTTRNY 608

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            GTGLGL + ++      G   + S   KG++  +  P
Sbjct: 609 GGTGLGLSITRSFCRMIGGVVTVESEVGKGSVFTMEVP 646



 Score = 40.8 bits (94), Expect = 0.94,   Method: Composition-based stats.
 Identities = 17/235 (7%), Positives = 51/235 (21%), Gaps = 3/235 (1%)

Query: 90  DAHGYLKEISEELPKTI-GNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           D+   +   + +  +    +    + G    ++ +         +    K    W  +  
Sbjct: 301 DSEDRILVANSKYCEIFPSHKPNTLRGRSFREIVEQNLEMGQVDLEG--KSPQEWVDERV 358

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +   L          +    R+        +          +   +R        +
Sbjct: 359 RLHRDPAGLVDEKRFGDKWVRISKRKIPDGGTVAVYTDITQLKQRQVELERAKSHAESAN 418

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           E K    +    +              +  +     +     D          L S  + 
Sbjct: 419 EAKSRFLASMSHELRTPLNAIIGYSEMLIEEARDHEDEELVPDLDKIASAGRHLLSLIND 478

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
           + +        +  + +      L  +   +   L  RN    +  F+       
Sbjct: 479 ILDLSKIEANKMEVFLETFSVADLLRDVAATVAPLMARNGNEFTQDFEADLGEMH 533


>gi|46107708|ref|XP_380913.1| hypothetical protein FG00737.1 [Gibberella zeae PH-1]
          Length = 1370

 Score =  335 bits (860), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 116/615 (18%), Positives = 215/615 (34%), Gaps = 59/615 (9%)

Query: 252  DVLKTEKYP---LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN------SKESFEY 302
            + L TE+ P   LL +E      +   +  N ++         ++++      +      
Sbjct: 431  ERLGTEEIPICKLLKTEMPFTGFRVGMYDENRSRRVYDVLGEAIRDDSTGEFLAGVVTGR 490

Query: 303  LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSVDDIE 361
                    ++   +  E       D  P   +  +   L  + N  F   T     D + 
Sbjct: 491  DVTVMTEEITQIKERDEERFKLICDTMPQLVWTATPDGLVDFWNTRFYSYTGLAPEDSLG 550

Query: 362  IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
             +             D+          S  T  +            E    +     ++ 
Sbjct: 551  KS------WVNAFHPDDLPEAEKRWKHSLETGDSYVTEYRCQSKEGEWRWYLGRAMPQRN 604

Query: 422  NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS----- 476
             +  +     G   +  ++   K  M+    QL S++  +   I  ++    +       
Sbjct: 605  KETGKVEKWFGTCTDVHESIQTKMAMKRTRQQLLSVIAHSHVTIFTVDPNRRVTMLEGAL 664

Query: 477  -TNRAVSK-------LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL-EK 527
              N    +         G  +  +  +  T  L           +  +L     + L E 
Sbjct: 665  IWNNTHEESHDGTRWFIGEDMYTVFNR-LTAQLADGERPEFLEPIELLLDGKATEDLKEH 723

Query: 528  ITLGSTKEEKLLSL------RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI---- 577
                     + L++          +   +       + D++E K  +  L    K     
Sbjct: 724  GIDDRWYRTRFLTMLGKRAQEGDPRHNTYVEGVIGVIMDVTELKIREKALEKQSKEKRKA 783

Query: 578  ------AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
                  A++ +  KS FLA +SHEIRTP+T ++G +E++     G   +    EY   I 
Sbjct: 784  MANEAAAKEANRLKSQFLANMSHEIRTPITGVLGMAELLM----GMELDQEQQEYVENIQ 839

Query: 632  RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
             S   +L ++ND+LD SK+ESG++++     SL   V E   ++Q     K +  ++   
Sbjct: 840  SSATSLLTVINDILDFSKVESGRLDIEEVQFSLSHIVKEVGRMLQFAVERKNLDFQSDVG 899

Query: 692  NNIPR---ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDT 744
            + I     ++ D   V+QI  N+L+N+I FT  G  +  S           EV   V D+
Sbjct: 900  DGIENDLVVIGDPGRVRQILTNLLTNSIKFTNQG-YVRFSVVAEKETSETIEVKFSVEDS 958

Query: 745  GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
            G+G+ +   +K  +PF Q   S   R  GTGLGL + K ++D   G+  + S    GT  
Sbjct: 959  GIGIQDDVRKKLFQPFSQGDASTARRFGGTGLGLTICKNLLDLMHGRITLESKVGVGTRA 1018

Query: 805  EIIFPLYDTSHPHDC 819
                P    + P + 
Sbjct: 1019 TFWVPFNKPNGPAEA 1033



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/214 (7%), Positives = 46/214 (21%), Gaps = 8/214 (3%)

Query: 70  SENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI-D 128
            E  F         +  W     G +   +       G      +G    +      + +
Sbjct: 506 DEERFKLICDTMP-QLVWTATPDGLVDFWNTRFYSYTGLAPEDSLGKSWVNAFHPDDLPE 564

Query: 129 PNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYS-RNREFSGFRGFGIVHVN 187
                   L+  +++  +      EG   +      A+P  +    +    + FG     
Sbjct: 565 AEKRWKHSLETGDSYVTEYRCQSKEGE--WRWYLGRAMPQRNKETGKVE--KWFGTCTDV 620

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM-KNKVSSLTEY 246
                 +   KR  ++   +                +   +         +        +
Sbjct: 621 HESIQTKMAMKRTRQQLLSVIAHSHVTIFTVDPNRRVTMLEGALIWNNTHEESHDGTRWF 680

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINL 280
                  +       L   E     +     ++ 
Sbjct: 681 IGEDMYTVFNRLTAQLADGERPEFLEPIELLLDG 714


>gi|194336761|ref|YP_002018555.1| multi-sensor signal transduction histidine kinase [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194309238|gb|ACF43938.1| multi-sensor signal transduction histidine kinase [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 608

 Score =  335 bits (860), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 85/393 (21%), Positives = 179/393 (45%), Gaps = 29/393 (7%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
             + ++         +  +++      RK++     L ++     + I + +  G I   
Sbjct: 220 LHRKDETGVIARALNVMTDEI------RKLQHREEWLRAVFSGIREAIIVTDATGDITMV 273

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
           N A S++F         +P +      + S +      + S  +    E+++L +TK  +
Sbjct: 274 NPAASRMFRINGSMFKPRPLSHL----SDSKLQELFARVHSTRVTLHKEELSLMTTKGAR 329

Query: 538 LLSLR-IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
           ++ +  + + K    +     ++DI++ +  +                + DF+A VSHE+
Sbjct: 330 IMQISSMPLTKEELFTGTVFVLNDITKLRNLE--------------KIRRDFVASVSHEL 375

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTPLT I G++E + +       +     +   I  +   +  +VND+LD+S+IESG++ 
Sbjct: 376 RTPLTVITGYTETLLDGAMHEPEHATA--FLQTILLATEQLTALVNDVLDLSRIESGQIE 433

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716
             F  V L   V +++ L++   ++K+I +     + +P + AD R +  +  N+L NAI
Sbjct: 434 YTFSAVDLKRMVQKSVDLLKPALDKKQIRLDIHIPDGLPTVYADPRYLDIVVRNLLDNAI 493

Query: 717 HFTPS-GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
            +     G+I I T   S++ + L + D G+G+   +L +  + F ++  ++     GTG
Sbjct: 494 KYVDDQNGKIRI-TAFKSDDHLRLEIEDNGIGIAKSDLGRIFERFYRVDKARSRERGGTG 552

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           LGL + K +V A+ G   + S    G++  ++ 
Sbjct: 553 LGLAIVKHIVMAHKGNIDVRSRVNLGSVFTLML 585


>gi|254182521|ref|ZP_04889115.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei 1655]
 gi|184213056|gb|EDU10099.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei 1655]
          Length = 818

 Score =  335 bits (860), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 104/519 (20%), Positives = 180/519 (34%), Gaps = 27/519 (5%)

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEI 362
           S R + +L              +        V   HG L Y NPS   L        +  
Sbjct: 158 SRRANDALRRREAGARRYYETLLQSLTQGVVVSDRHGMLTYMNPSAAALIGC-DATAVRG 216

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
                                +          +       +  +    + +        +
Sbjct: 217 LPFRDVYRAYDGRGARVRASALEHVLRSGRSASVEGH--WLAPHDGQRVPIAEAASPLVD 274

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
              +      I  +    R      ++    L  ++EA+ D I  +     I S N A  
Sbjct: 275 SAGDMTGAVLIVRDISIERERSAASQM----LRRLVEASPDAIVGVGSNRRITSWNPAAR 330

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
           ++FGY           + +           L E +            L   ++   +   
Sbjct: 331 RMFGYDEHAARGCDVAMLIAPRWLRNHP--LPESVPDMREPIENVDVLCVRQDGGRMRAT 388

Query: 543 IIIKKLPFSSCYSL----TMHDISEWKQEKNK-------LSHAKKIAEKESSHKSDFLAR 591
           +    +       +    T+ D  E ++ + +          A++ A+  +  K + LA 
Sbjct: 389 MSASPVFDERDACIALSLTLRDTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLAT 448

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           VSHE+RTPL  I G+ EV++N   G L      +  + IDRS   +  +V D+LD S + 
Sbjct: 449 VSHELRTPLNVIYGWIEVLRNPVDGAL----QQQAIDAIDRSARSLSRMVGDILDASSLA 504

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
           +GK+ L   PV L   V++    +   A    I +    A     +  D   ++Q+  N+
Sbjct: 505 TGKLRLDAMPVDLVRIVNDVTGALGAAAQADGIALSVECALATCIVSGDGERLRQMLSNL 564

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           LSNA  FTP GG++ +S       +  L V DTG G++   L    + F +   +     
Sbjct: 565 LSNAFKFTPRGGRVTVSLERHD-AQAKLTVADTGQGISPEFLPHVFEAFRRAEGAPASPR 623

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFP 809
            G GLGL + + + + + GK    S    +GT   I  P
Sbjct: 624 RGLGLGLSIVRHIAELHGGKVEAASAGKNRGTTFAITLP 662



 Score = 65.4 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/225 (12%), Positives = 54/225 (24%), Gaps = 5/225 (2%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK---RQNTWYGK 146
           D HG L  ++      IG  A  + G+   DV               L+   R       
Sbjct: 191 DRHGMLTYMNPSAAALIGCDATAVRGLPFRDVYRAYDGRGARVRASALEHVLRSGRSASV 250

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
              W        VPI  AA P+     + +G     IV    ++ +  A  + L +    
Sbjct: 251 EGHWLAPHDGQRVPIAEAASPLVDSAGDMTGA--VLIVRDISIERERSAASQMLRRLVEA 308

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
             +   G  S  +      + +    +     +   +    A +          +    E
Sbjct: 309 SPDAIVGVGSNRRITSWNPAARRMFGYDEHAARGCDVAMLIAPRWLRNHPLPESVPDMRE 368

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
                       +  +         + +                 
Sbjct: 369 PIENVDVLCVRQDGGRMRATMSASPVFDERDACIALSLTLRDTGE 413


>gi|289622415|emb|CBI51037.1| putative histidine kinase group protein [Sordaria macrospora]
          Length = 1333

 Score =  335 bits (860), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 115/643 (17%), Positives = 212/643 (32%), Gaps = 55/643 (8%)

Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP-----LLTSE 265
           K G   +  +       Q P     ++           + D   + E        L+ +E
Sbjct: 322 KDGSVILPNKPARRLFNQDPAQGAPLEGSNLLEQWKVWNDDFSRQLETDEHPISVLIKTE 381

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNN------SKESFEYLSHRNHPSLSAYFDEGE 319
                 +         +         +++       +         R    +S   +  +
Sbjct: 382 MPFETYRIGMLDQGGERLIFDVEGAVIRDEITGEFLAGVITCRDITRIEHEISQIKEADK 441

Query: 320 NLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
                  D  P   +     G   + N  +   T     D +   GG         L + 
Sbjct: 442 ERFRLICDTMPQLVWTTGPDGAHDFYNSRWYSYTGLTEEDSLG--GGWRKAFHPDDLVET 499

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
                  L   +   I    R      + E    +      K  Q  +     G   +  
Sbjct: 500 ERRWQSSLRTGEPYVIEYRCR----SKDGEWRWFLGRALPLKNKQTGKIDKWFGTCTDVH 555

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA-----------VSKLFGY 487
           +T   K + +    QL S++  +   +  ++ +  +     +            S   G 
Sbjct: 556 ETMEAKLEAKRTRQQLRSVIAHSRMTMFAVDPDRKVTLLEGSLIWDALSPELSASWFIGK 615

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR----I 543
            V ++        L           L  IL       L+    G         +     I
Sbjct: 616 DVYEVFN-SLNQQLPDGQTPAFLQPLESILGGKSPVELQDHKFGRWYRTGFQPILRRDPI 674

Query: 544 IIKKLPF-SSCYSLTMHDISEWKQEKN----------KLSHAKKIAEKESSHKSDFLARV 592
               +          + D++E K  +           +L   +  A++ S  KS FLA +
Sbjct: 675 TGNSIENFVEGVMGFIMDVTELKDRERDIEAQVLEKRQLLANEAAAKEASRLKSQFLANM 734

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHEIRTP+T +IG +E++ +       +    E    I RS N +L ++ND+LD SKIES
Sbjct: 735 SHEIRTPITGVIGMAELLLDVGL----DAEQRELTENIFRSANALLTVINDILDFSKIES 790

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI---PRILADLRSVKQIAL 709
           G++++     SL   + E   ++   A  K +       ++I     ++ D   ++Q+  
Sbjct: 791 GRLDIEEVQFSLAVVIQEVSKMLSFTAERKGLTFNYEICSDIALDLVVMGDPGRLRQVLC 850

Query: 710 NILSNAIHFTPSGGQ---IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
           N+  N I F   G     + +        EV   ++DTG+G+    L+   +PF Q   S
Sbjct: 851 NLAQNGIKFCHEGHVKLNVFVEQETNDTIEVKFVIQDTGIGIEEEVLKGLFQPFSQGDAS 910

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
              +  GTGLGL ++K +++   G+  + S   +GT      P
Sbjct: 911 TARKFGGTGLGLTISKNLLELMNGRMALASKRGEGTTATFWIP 953



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/333 (9%), Positives = 78/333 (23%), Gaps = 28/333 (8%)

Query: 69  DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI- 127
             +  F         +  W     G     +       G      +G           + 
Sbjct: 439 ADKERFRLICDTMP-QLVWTTGPDGAHDFYNSRWYSYTGLTEEDSLGGGWRKAFHPDDLV 497

Query: 128 DPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN-REFSGFRGFGIVHV 186
           +        L+    +  +      +G   +      ALP+ ++   +    + FG    
Sbjct: 498 ETERRWQSSLRTGEPYVIEYRCRSKDGE--WRWFLGRALPLKNKQTGKID--KWFGTCTD 553

Query: 187 NRVD-NDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS--- 242
                       +   +  S +   +    +V+ ++     + S           +S   
Sbjct: 554 VHETMEAKLEAKRTRQQLRSVIAHSRMTMFAVDPDRKVTLLEGSLIWDALSPELSASWFI 613

Query: 243 --------LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294
                    +      D        PL +      P +   H         +  F  +  
Sbjct: 614 GKDVYEVFNSLNQQLPDGQTPAFLQPLESILGGKSPVELQDHKFG---RWYRTGFQPILR 670

Query: 295 NSKESFEYLSHRNHP------SLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSF 348
               +   + +           ++   D   ++  + ++K  +     +          F
Sbjct: 671 RDPITGNSIENFVEGVMGFIMDVTELKDRERDIEAQVLEKRQLLANEAAAKEASRLKSQF 730

Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
           L    ++    I    G++ LL    L      
Sbjct: 731 LANMSHEIRTPITGVIGMAELLLDVGLDAEQRE 763


>gi|256831176|ref|YP_003159904.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256580352|gb|ACU91488.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 878

 Score =  335 bits (860), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 111/640 (17%), Positives = 224/640 (35%), Gaps = 39/640 (6%)

Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEK---EKYDIFSQQSPPPHLRMKNKVSSLTE 245
               P  L +   K    + +I      + +      D    +   P L    + + +  
Sbjct: 129 AQPMPPELLEEASKLVPVVRDISDQGHFMIRTQMHALDASKNEGVSPDLAAVREQTEVLF 188

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS- 304
             A K   +      +  +      +      + +           +           + 
Sbjct: 189 SQATKTAEILQRDIRVRIARAIDNHQTNANRILAMTCGLVVLLLTGMVTLCVRIMLSFAD 248

Query: 305 -HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY-ANPSFLLLTKYKSVDDIEI 362
             R+     A   E        ++  P+   +     +    N +   L   +     E 
Sbjct: 249 MLRSREKDGAAVVEANAGMERILEALPVGIAILGQDRIIRRVNLAATNLLDIEPGWFFER 308

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
                   +  +  D          R  R       R+  ++     +L +         
Sbjct: 309 HVPWDMFYENVQSDDPE--------RQPRIEFEHEVRMRALE---GRTLDVIKSSIPVIL 357

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
           Q    + +  +  +    +  +R++  E  +L S+L   ++G+A+ +  G +L  N ++ 
Sbjct: 358 QGETLILEVFM--DVTQRKQAERELLQEKSRLESLLSGINEGVALTDERGGVLEVNESLC 415

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
           ++ G    D+L +                     L  + R  L +     +  +  L +R
Sbjct: 416 RILGAKAHDLLGRKVWDLFPDGILGTQLAQGLRALQENPRTRL-REIQLESFRDMALVVR 474

Query: 543 IIIKKLPFS-SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
           +       +     +++ +++            ++ AE  S  KS FLA +SHEIRTP+ 
Sbjct: 475 MQPVLGEEAFGGMIVSVIEVTAIVDA-------RRRAEAASQAKSMFLANMSHEIRTPMN 527

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           +I+G  E++   R          +    I      +L I+ND+LD SKIE+G + +  E 
Sbjct: 528 SILGHGELLARTRLDT----EQADCVQGIRVCAESLLVIINDILDFSKIEAGMLRIAPED 583

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           V L   ++   +++   A +K + ++   A     +  D   + QI +N++ NAI FT  
Sbjct: 584 VDLGGLLARVRTMLSEQAQKKGLDLQLVTAGLPQVVSTDAGRLTQILVNLVGNAIKFTEH 643

Query: 722 GGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
           GG + +S    ++      +   VRDTG+G++    +     F Q   S      GTGLG
Sbjct: 644 GG-VELSVRGEAHAGGKAALCFSVRDTGIGISADRQKGIFVSFEQADGSLTREYGGTGLG 702

Query: 778 LPLAKAMVDANMGK-FYIFSTPAKGTLIEIIFPLYDTSHP 816
           L +A ++V    G    + S   +G+       + + S P
Sbjct: 703 LTIANSLVRLLGGSGISVKSQTGQGSTFSFTL-VMNVSAP 741


>gi|167840906|ref|ZP_02467590.1| sensory box histidine kinase/response regulator [Burkholderia
           thailandensis MSMB43]
          Length = 765

 Score =  335 bits (860), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 109/630 (17%), Positives = 201/630 (31%), Gaps = 31/630 (4%)

Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254
           A   R   +           +++ +           P  L      +++           
Sbjct: 2   ARFVRRHARNYATVAGFIAIATLLQAALVRAGGADMPLALYFPFIAAAVWATSLAGGIGA 61

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH--PSLS 312
                 L       L +   +      +  +   F  +          L        +L 
Sbjct: 62  TAASAVL--IWVMFLSDTLAYPGPLSARIVQLATFVIVNCAICAIVAALKGSRRMNEALR 119

Query: 313 AYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
                        +        V    G + Y NP+   L        +           
Sbjct: 120 RREALARRYYEALLQSLTQGVVVSDRRGVITYMNPAAATLIGC-DATAVRGLPFRGVFRA 178

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
                       +                  +  +    + +  +     +         
Sbjct: 179 YDGHGARVRATALDRVLRSGASATVDGH--WLMPHDGQRVPIAEVASPLVDAAGGMTGAV 236

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
            I  +    R      ++    L  ++EA+ D I  +     I S N A  ++FGY  + 
Sbjct: 237 LIVRDVSVDRERVAASQM----LRRLVEASPDAIVGVGANRRITSWNPAACRMFGYDEQA 292

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
            L +   + +         H L   +            L   ++   L   +    +   
Sbjct: 293 ALGRDVAMLIAPRWLR--RHPLPASVPGVREPIENVDVLCMRQDGSRLRATLSASPVLDD 350

Query: 552 SCYSL----TMHDISEWKQEKNK-------LSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
               +    T+ D    ++ + +          A++ A+  +  K + LA VSHE+RTPL
Sbjct: 351 RDACVALSLTLRDTGGQRRRERRAHRSLRGARDARRQADTSNRLKDELLATVSHELRTPL 410

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
             I G+ EV++N   G L      +  + IDRS   +  +V D+LD S + +GK+ L   
Sbjct: 411 NVIYGWIEVLRNPVDGAL----QQQAIDAIDRSARSLARMVGDILDASSLATGKLRLDAM 466

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720
           PV L   V++    +   A    I +    A +   +  D   ++Q+  N+LSNA  FTP
Sbjct: 467 PVDLVRIVNDVTGALGTAAQADGIELAVECALDTCIVSGDGERLRQMLSNLLSNAFKFTP 526

Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
            GG++ +S   T   +  L V DTG G++   L    + F +   +      G GLGL +
Sbjct: 527 RGGRVTVSLERT-GSQAKLTVADTGQGISPEFLPHVFEAFRRAEGAPASSRRGLGLGLSI 585

Query: 781 AKAMVDANMGKFYIFST-PAKGTLIEIIFP 809
            + +V+ + GK    S    +GT   +  P
Sbjct: 586 VRHIVELHGGKVGAASAGKNRGTTFAVTLP 615



 Score = 60.0 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/223 (11%), Positives = 50/223 (22%), Gaps = 5/223 (2%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK---RQNTWYGK 146
           D  G +  ++      IG  A  + G+    V               L    R       
Sbjct: 144 DRRGVITYMNPAAATLIGCDATAVRGLPFRGVFRAYDGHGARVRATALDRVLRSGASATV 203

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
              W +      VPI   A P+       +G     IV    VD +  A  + L +    
Sbjct: 204 DGHWLMPHDGQRVPIAEVASPLVDAAGGMTGA--VLIVRDVSVDRERVAASQMLRRLVEA 261

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
             +   G  +  +      +      +         +    A +          +    E
Sbjct: 262 SPDAIVGVGANRRITSWNPAACRMFGYDEQAALGRDVAMLIAPRWLRRHPLPASVPGVRE 321

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
                       + ++         + ++              
Sbjct: 322 PIENVDVLCMRQDGSRLRATLSASPVLDDRDACVALSLTLRDT 364



 Score = 57.7 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 33/384 (8%), Positives = 85/384 (22%), Gaps = 25/384 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           + A+  +   +    +  G      +G  +  +     +  +     +   +        
Sbjct: 269 VGANRRITSWNPAACRMFGYDEQAALGRDVAMLIAPRWLRRHPLPASVPGVREPIENVDV 328

Query: 149 L-WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
           L    +G+ L     L+A P+               +              R  +     
Sbjct: 329 LCMRQDGSRLRA--TLSASPVLDDRDACVALS--LTLRDTGGQRRRERRAHRSLRGARDA 384

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKN--KVSSLTEYYAHKDDVLKTEKYPLLTSE 265
                  + ++ E     S +   P   +    +V       A +   +        +  
Sbjct: 385 RRQADTSNRLKDELLATVSHELRTPLNVIYGWIEVLRNPVDGALQQQAIDAIDRSARSLA 444

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD--------- 316
                  +                  ++  +  +    +      +    +         
Sbjct: 445 RMVGDILDASSLATGKLRLDAMPVDLVRIVNDVTGALGTAAQADGIELAVECALDTCIVS 504

Query: 317 -EGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
            +GE L     +     F F    G +     S         +   +   G+S       
Sbjct: 505 GDGERLRQMLSNLLSNAFKFTPRGGRVTV---SLERTGSQAKLTVADTGQGISPEFLPHV 561

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF---IPFEKANQFPENMPQN 431
                  +           +  S   H ++ +     A +         A   P      
Sbjct: 562 FEAFRRAEGAPASSRRGLGLGLSIVRHIVELHGGKVGAASAGKNRGTTFAVTLPAGWQPI 621

Query: 432 GIEPEDVD-TRINKRKMEIEVMQL 454
           G     V   R  +  ++ + + L
Sbjct: 622 GALAWAVQMERGARMTLDAQRVLL 645


>gi|190891008|ref|YP_001977550.1| two-component sensor histidine kinase [Rhizobium etli CIAT 652]
 gi|190696287|gb|ACE90372.1| probable two-component sensor histidine kinase protein [Rhizobium
           etli CIAT 652]
          Length = 761

 Score =  335 bits (860), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 132/678 (19%), Positives = 256/678 (37%), Gaps = 55/678 (8%)

Query: 171 RNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP 230
            + + +  +     ++ +   D  A    +            G S V     D F + S 
Sbjct: 97  DSGDITQAQARLARYLPQDRLDDGAFVLLVQASGKVFAATTAGLSHVGSNVGDFFPEVSA 156

Query: 231 PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG 290
               R  ++   +           +            +    E+   +   +        
Sbjct: 157 --IRRFGDRAGVIETTIGGVPHYAEITLMGNAGGFVVAATSLEEVGRLWREELALNVTLF 214

Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFD---EGENLTPETVDKCPIPFFVYS-HGNLFYANP 346
              ++      Y  +          D   E        + +     + +      F+ + 
Sbjct: 215 AGISSILLVILYAYYTQVKRARDADDIFLESNLRVETALSRGRCGLWDFDFENREFFWSR 274

Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
           S   +      D     G  + L+      D+  +  +    +         ++  ++  
Sbjct: 275 SMYDMLGLPGSDKTMGFGEAARLMH----PDDGGLYEIARAIAKGHSGQVD-QIFRMRHA 329

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
             + + M        +     M   GI  +  +     ++      +L   +E TS+   
Sbjct: 330 GGHYVWMRARAQVIRSNSGR-MHLIGIAMDVTEQHRLAQRYAEADQRLADAIECTSEAFV 388

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
           + ++   ++  N    + +G P   ++       +     +     +   ++        
Sbjct: 389 LWDKNDRLVMCNTHFQQAYGLPDSVLVPGTERSIV---NAAAARPVIERRIADADGSGYS 445

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH------------- 573
           + T     +E+ L +     +            DI+  K+ + +L               
Sbjct: 446 RTTEVQLADERWLQINERRTR---DGGRVSVGTDITLMKRHQERLRESERRLMATIGDLS 502

Query: 574 ----------------------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
                                  K+ AE  +  KS+FLA +SHE+RTPL AI+GFSE+++
Sbjct: 503 ASRQTLEIQKSELSTANANYQAEKERAEAANKAKSEFLANMSHELRTPLNAILGFSEILQ 562

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
           NQ FGPLG+ +Y EYA  I  SG  +L++++D+LD+SKIE+G + LH E + L   + E+
Sbjct: 563 NQMFGPLGSAKYDEYARDIHDSGKHLLNVISDILDMSKIEAGHLKLHRERIDLVPLIEES 622

Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
           +    + A EK ILI    ++ +  + AD R++KQ+ LN+LSNA+ FT +GG+I + T  
Sbjct: 623 LRFTAIPAAEKNILIDQRISSGL-TLTADRRAMKQVLLNLLSNAVKFTDNGGRIAVRTRR 681

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
                V + + DTG+G+    L K  +PF Q+ +       G+GLGL +++++   + G+
Sbjct: 682 VD-GAVTVTIADTGIGIPRSALSKIGQPFEQVQSQYAKSKGGSGLGLAISRSLTALHGGR 740

Query: 792 FYIFSTPAKGTLIEIIFP 809
             I S  A GT+I +  P
Sbjct: 741 MKIRSREAVGTVISLRIP 758



 Score = 44.6 bits (104), Expect = 0.077,   Method: Composition-based stats.
 Identities = 21/247 (8%), Positives = 55/247 (22%), Gaps = 7/247 (2%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN--HIGDLLKRQNTW 143
            W+ D        S  +   +G        M   + + ++H D      I   + + ++ 
Sbjct: 260 LWDFDFENREFFWSRSMYDMLGLPGSDKT-MGFGEAARLMHPDDGGLYEIARAIAKGHSG 318

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                         YV +   A  I S +         GI       +         D++
Sbjct: 319 QVDQIFRMRHAGGHYVWMRARAQVIRSNSGR---MHLIGIAMDVTEQHRLAQRYAEADQR 375

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL-RMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
            +   E       +  +   +    +       + + V       +  +           
Sbjct: 376 LADAIECTSEAFVLWDKNDRLVMCNTHFQQAYGLPDSVLVPGTERSIVNAAAARPVIERR 435

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
            ++               ++   +      ++  + S                +    L 
Sbjct: 436 IADADGSGYSRTTEVQLADERWLQINERRTRDGGRVSVGTDITLMKRHQERLRESERRLM 495

Query: 323 PETVDKC 329
               D  
Sbjct: 496 ATIGDLS 502


>gi|288554580|ref|YP_003426515.1| two-component sensor histidine kinase yycG [Bacillus pseudofirmus
           OF4]
 gi|288545740|gb|ADC49623.1| two-component sensor histidine kinase yycG [Bacillus pseudofirmus
           OF4]
          Length = 607

 Score =  335 bits (860), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 92/507 (18%), Positives = 194/507 (38%), Gaps = 34/507 (6%)

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPI-PFFVYSHGNLFYANPSFLLLTKYKSVDDI-EIA 363
           R   +L    D      P+T D+  +    +         N +   +    S++DI +  
Sbjct: 123 RVKRALLGARDAAIERDPQTGDRVQVLAVPIKDQD-----NNTLGAIYIESSMEDIYDQM 177

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIA-ASARLHTIQWNRENSLAMTFIPFEKAN 422
             ++++L +  +        +++  +          R   ++  + +            +
Sbjct: 178 QQINSILLSGTVIALLITAVLVILLARTITAPIMDMRKQALRMGQGDFSRQVT--VYSTD 235

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
           +  +           +      R    E  +L S+L   +DG+   +++G I+  N+   
Sbjct: 236 EIGQLAYSFNDLTHKLQDATATRA--REQKKLSSVLAHMTDGVLATDQDGHIILMNKRAE 293

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
           +L G    ++++      L       +     +  S+ L  + ++               
Sbjct: 294 ELLGVQSYEVIKSLLPEVLRLPETYELEDLFEQTDSILLDFSDDEQEFLIEAN-----FS 348

Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
           +I ++    +     +HD++E ++ +                + +F+A VSHE+RTPLT 
Sbjct: 349 VIQEEDGPINGLITVLHDVTEQEKIEQD--------------RREFVANVSHELRTPLTT 394

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           +  + E +++             +          ++ +VNDLL +SKI+S    L    V
Sbjct: 395 MKSYLEALEDGALDE--PELARRFVGVTQNETERMIRLVNDLLQLSKIDSHDYRLQLTWV 452

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
              + + E I   ++ A  + I      + +   +  D   + Q+  NI+SNA+ ++P G
Sbjct: 453 DFGQFLHEVIDRFEMVAQGRDIHFTRHISGHPTYVEVDKDKLTQVIDNIISNAMKYSPEG 512

Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
           G I  +T       V + + D G+G+      K    F ++  ++     GTGLGL +AK
Sbjct: 513 GNIT-TTLMHQGHNVRVSISDEGMGIPRENQSKIFDRFYRVDKARARSIGGTGLGLAIAK 571

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFP 809
            +V A+ G+ ++ S    GT I    P
Sbjct: 572 ELVHAHGGEIWVSSEYGSGTTIYFTLP 598



 Score = 40.0 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 19/147 (12%), Positives = 45/147 (30%), Gaps = 10/147 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            D  G++  +++   + +G  ++++I   L +V   L +     + DL ++ ++      
Sbjct: 279 TDQDGHIILMNKRAEELLGVQSYEVIKSLLPEV---LRLPETYELEDLFEQTDS-----I 330

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           L           I+     I   +   +G     ++H            +      SH  
Sbjct: 331 LLDFSDDEQEFLIEANFSVIQEEDGPINGL--ITVLHDVTEQEKIEQDRREFVANVSHEL 388

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLR 235
                      E  +  +   P    R
Sbjct: 389 RTPLTTMKSYLEALEDGALDEPELARR 415


>gi|298246973|ref|ZP_06970778.1| multi-sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297549632|gb|EFH83498.1| multi-sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 796

 Score =  335 bits (860), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 93/640 (14%), Positives = 205/640 (32%), Gaps = 41/640 (6%)

Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS-------PPPHLRMKN 238
                       +  ++ F  L E                                   +
Sbjct: 180 EIAEHQQVTERLQESEQNFRVLSETVPQLVWTMFPNGRRDYVNQRWCDYTGSTRERMQSD 239

Query: 239 KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE 298
           + +     +    +  +      L + E    E    +               ++N + E
Sbjct: 240 RWAHFQFIHPDDREGNRAFWQHALQTGEPFESEHRLRNGHTGTYRWFLARAMPVRNETGE 299

Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPE----TVDKCPIPFFVYS-HGNLFYANPSFLLLTK 353
             ++             ++    + E      +  P   +     G   Y N  +   T 
Sbjct: 300 IVKWFGTATDIDEQKRAEQQLKESEENWRVLAETMPQLVWSTGPDGVHEYTNQRWRDYTG 359

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
                          L+         A+                 RL   Q         
Sbjct: 360 LTPEQVQNNRWAHLQLIHPDDREGTRAL--WQHALDTGAMYEHEERLSNGQT--GAYRWF 415

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG- 472
                   ++  + +   G   +  D +  +  +     +   ++ +   GI +   EG 
Sbjct: 416 LVRAMSIRDEAGQIVKWFGTCTDIDDQKRMQEALRESQERASVLMNSNIIGIFV--EEGE 473

Query: 473 IILSTNRAVSKLFGYPVEDIL-RK-PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530
            I+  N    ++ GY  ED+   +  +         +       E+ +       EK  +
Sbjct: 474 QIVDANDTFLRMTGYTREDLRAGRINWRHMTPPEYLARTQQAHQELATQQSMTPYEKEYV 533

Query: 531 GSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
                   + +  I+ +       +  + D S  K+ + +              K DF++
Sbjct: 534 CQDGSRLPVLVGGIVFQHHPLQAITFVL-DNSARKELEQR--------------KDDFIS 578

Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650
             SHE+R PLTA+   +  +  ++    G        + ++   N V  +V +LLD+SKI
Sbjct: 579 MASHELRGPLTALKLQT-TLLRRQLAKQGTQASAPALSSMETQINKVTRLVEELLDVSKI 637

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710
           ++G++    E V LD  + E    +Q  +    +++R +    +   + D   + Q+  N
Sbjct: 638 QAGRLEYVQETVDLDALLREITETLQQSSPSHTLVVRGTGGTGL---IGDRDRLGQVFTN 694

Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           ++SNAI ++P+   + +  + + +  V + V D G+G+   + +K  + F ++    Q  
Sbjct: 695 LISNAIKYSPNAETVEMDLSASEDA-VTVCVCDHGLGIPREQRDKIFERFYRVSGPNQKA 753

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             G G+GL +   +V  + G   + S   KG+  ++  P+
Sbjct: 754 IPGLGMGLYIVAEIVRHHGGSITVESEVGKGSTFQVTLPM 793



 Score =  120 bits (301), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 42/406 (10%), Positives = 98/406 (24%), Gaps = 30/406 (7%)

Query: 69  DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLC--DVSDILH 126
           +SE  F         +  W +  +G    +++      G+   +M   R           
Sbjct: 193 ESEQNFRVLSETVP-QLVWTMFPNGRRDYVNQRWCDYTGSTRERMQSDRWAHFQFIHPDD 251

Query: 127 IDPNNHIG-DLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVH 185
            + N       L+    +  +        T  Y      A+P+ +   E    + FG   
Sbjct: 252 REGNRAFWQHALQTGEPFESEH-RLRNGHTGTYRWFLARAMPVRNETGEIV--KWFGTAT 308

Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP-------PPHLRMKN 238
                       K  ++ +  L E                             P     N
Sbjct: 309 DIDEQKRAEQQLKESEENWRVLAETMPQLVWSTGPDGVHEYTNQRWRDYTGLTPEQVQNN 368

Query: 239 KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE 298
           + + L   +    +  +      L +      E+   +              ++++ + +
Sbjct: 369 RWAHLQLIHPDDREGTRALWQHALDTGAMYEHEERLSNGQTGAYRWFLVRAMSIRDEAGQ 428

Query: 299 SFEYLSHRNHP----SLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKY 354
             ++            +     E +      ++   I  FV     +  AN +FL +T Y
Sbjct: 429 IVKWFGTCTDIDDQKRMQEALRESQERASVLMNSNIIGIFVEEGEQIVDANDTFLRMTGY 488

Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
              D    AG ++     P        +      + ++               +  +   
Sbjct: 489 TREDL--RAGRINWRHMTPPEYLARTQQAHQELATQQSMTPYE----------KEYVCQD 536

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
                                  V     ++++E       S+   
Sbjct: 537 GSRLPVLVGGIVFQHHPLQAITFVLDNSARKELEQRKDDFISMASH 582



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 15/177 (8%), Positives = 42/177 (23%), Gaps = 7/177 (3%)

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
                      +  +  E  + +    +++        + E     +  +   G     N
Sbjct: 163 IVRELASFVTTEIALRIEIAEHQQVTERLQESEQNFRVLSETVPQLVWTMFPNGRRDYVN 222

Query: 479 RAVSKLFGYPVEDILRKPFTV--FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
           +      G   E +    +    F+  +       +    L        E          
Sbjct: 223 QRWCDYTGSTRERMQSDRWAHFQFIHPDDREGNRAFWQHALQTGEPFESEHRLRN-GHTG 281

Query: 537 KLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
                      +   +     +  T  DI E K+ + +L  +++     +      +
Sbjct: 282 TYRWFLARAMPVRNETGEIVKWFGTATDIDEQKRAEQQLKESEENWRVLAETMPQLV 338


>gi|94501557|ref|ZP_01308075.1| sensory transduction histidine kinase [Oceanobacter sp. RED65]
 gi|94426375|gb|EAT11365.1| sensory transduction histidine kinase [Oceanobacter sp. RED65]
          Length = 737

 Score =  335 bits (860), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 100/537 (18%), Positives = 190/537 (35%), Gaps = 28/537 (5%)

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP-IPFFVYS-HGNLFYANPSFLLL 351
            + ++  E L+        A     +    E +++   + ++ +    N  + +P +  +
Sbjct: 67  ADKQQIAEALTKAFRSQYLACHATTQTHALEQIERLSHVGYWRWHVSENRVFYSPQWKAM 126

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH-------TIQ 404
             Y+  +          LL     ++              T I    RL        TI 
Sbjct: 127 LGYEDNEIKSDFSAWENLLHPDDRAEAERQVAYFFSHPHATNI-VEFRLQCKNGQYRTII 185

Query: 405 WNRENSLAMTFIPFEKA-----NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459
                                     E                 +R +     ++  I  
Sbjct: 186 SKGRVESLQADNQTPDIIFGIHFPADELKGSQEDHQRLTTQLNRERTLRARAGEIADI-- 243

Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGYPVED--ILRKPFTVFLEQNTPSVMNHYLTEIL 517
               G   +N +   +  N+    + G        L      +    +   +   +   L
Sbjct: 244 ----GFWEVNLDTGYIYWNKKTRLIHGVDENYKPDLETAIEFYKAGYSRDTITQAVQTCL 299

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI 577
                  +E   +     EK +    I               D+ + K+  ++L  A+  
Sbjct: 300 EHGTPYDVELEIVDIHGNEKWVRAIGIKDDSSDELRMFGLFQDVDQRKRAISELEQARHA 359

Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
           AE+ +  KS FLA +SHE+RTP+  ++G  ++++    G +              S   +
Sbjct: 360 AEEANRAKSVFLASMSHELRTPMNGVLGMLQLME----GSVKQEVNKRRLQIASNSAKNL 415

Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697
           L I++D+LD S+IE+GK+ L     S+ E +S    L  +   +KR  I           
Sbjct: 416 LTILDDILDFSRIEAGKLVLDSTEFSMSELLSSLQELFNIEVEKKRSTIHIENLLQHDMY 475

Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757
             D   ++Q+ +N++ NA  FT   GQII+      N ++ L V+DTG+G+ +  L +  
Sbjct: 476 WGDEGRIRQMLINLIGNANKFT-QNGQIIVRAQSGENRDLKLSVQDTGIGIPSDRLGQIF 534

Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           + F Q  +S   +  G+GLGL + K + +   G   + S   KG+   +  PL +  
Sbjct: 535 ESFTQADSSTTRQYGGSGLGLTICKRLSELMNGTISVISEQGKGSEFTLHLPLREAE 591


>gi|75910979|ref|YP_325275.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
 gi|75704704|gb|ABA24380.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
          Length = 680

 Score =  335 bits (860), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 91/399 (22%), Positives = 169/399 (42%), Gaps = 18/399 (4%)

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490
             I+ +         ++     +  S+   +  GI   +  G    TN     + G    
Sbjct: 132 QAIQRQAAQLAAINAELRQSEERFRSLSTCSPIGIFETDTAGCCKYTNPRYQAICGLDAT 191

Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
           + L K +   +            +  +      + E          + + +R        
Sbjct: 192 ESLDKRWLESVHPEDQERAIASWSTYIDQGGDYSDEFRFQTVDGSLRWVQVRSSPMLSGN 251

Query: 551 SS--CYSLTMHDISEWKQEKN------KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
                +  T+ DI+  KQ +       +   A++ AE  +  K +FLA +SHE+RTPLT+
Sbjct: 252 GELLGHVGTLEDITARKQSEEIRAQVIREQTARQEAEAANRMKDEFLAVLSHELRTPLTS 311

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           ++G+S++++ ++       R       I+R+ N  + ++ D+LD+S+I  G++ L+  PV
Sbjct: 312 MLGWSKILRAKKLDEKATARA---LEAIERNANSQVQLIEDILDVSRIIRGQLRLNLSPV 368

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
           +L   V  A+  V+  A+ K + I T+    +  +  D   ++QI  N+L+NAI FTP  
Sbjct: 369 NLTTVVEAALEAVRPLADTKSMTINTALDYTLSPVSGDSARLQQIVWNLLTNAIKFTPKE 428

Query: 723 GQIIISTTHTSNE------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
           G++ I     S           ++V DTG+G+    L K  + F Q  ++      G GL
Sbjct: 429 GKVEIRLEGISGGLSDDLTHAQIQVIDTGIGIEREFLPKVFERFRQADSTTTRSHNGLGL 488

Query: 777 GLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFPLYDTS 814
           GL + + +V+ + G     S    KG    + FPL   +
Sbjct: 489 GLAIVRHLVELHKGTILAESPGVGKGATFTVRFPLIQEN 527



 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/263 (9%), Positives = 71/263 (26%), Gaps = 9/263 (3%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL-LKRQNTWY 144
            +  D  G  K  +       G  A + +  R  +       +         + +   + 
Sbjct: 166 IFETDTAGCCKYTNPRYQAICGLDATESLDKRWLESVHPEDQERAIASWSTYIDQGGDYS 225

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            +     ++G+     + + + P+ S N E  G    G +           +  ++ ++ 
Sbjct: 226 DEFRFQTVDGSLR--WVQVRSSPMLSGNGELLGH--VGTLEDITARKQSEEIRAQVIREQ 281

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
           +   E +  +   ++    +  +   P    +        +    K      E      +
Sbjct: 282 TARQEAEAANRMKDEFLAVLSHELRTPLTSMLGWSKILRAKKLDEKATARALEAIERNAN 341

Query: 265 EESSLPEQ--EDFHTINLNQYTK--KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
            +  L E   +    I              T+   + E+   L+     +++   D   +
Sbjct: 342 SQVQLIEDILDVSRIIRGQLRLNLSPVNLTTVVEAALEAVRPLADTKSMTINTALDYTLS 401

Query: 321 LTPETVDKCPIPFFVYSHGNLFY 343
                  +     +      + +
Sbjct: 402 PVSGDSARLQQIVWNLLTNAIKF 424


>gi|309790815|ref|ZP_07685359.1| PAS fold family protein [Oscillochloris trichoides DG6]
 gi|308227102|gb|EFO80786.1| PAS fold family protein [Oscillochloris trichoides DG6]
          Length = 1149

 Score =  335 bits (859), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 98/384 (25%), Positives = 177/384 (46%), Gaps = 20/384 (5%)

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490
             ++ E  +    +  +     ++ SILE+ +D    ++ E   +  N   ++L G P  
Sbjct: 367 EALQSELNERMRVEEALRQSSARVTSILESIADAFFAVDMEWKFVYVNDEAARLLGQPTT 426

Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
            ++ +            +     T+ +        E            + L + I     
Sbjct: 427 SLIGQSIWDSAADRVGLLYAELYTQAMESLKPIRDEVYFAPLD-----VWLAMRIYPWSD 481

Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
               ++ + D++     +  L  AK+ AE  +  +S+FLA +SHEIRTP+  +IG + ++
Sbjct: 482 --GLAIYIQDVTAAHAAQAALIEAKEAAEHATRARSEFLANMSHEIRTPMNGVIGMTGLL 539

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
            +       N R  EYA  I  SG  +L I+ND+LD+SKIESG+M L  +P  + E V  
Sbjct: 540 LDTPL----NERQREYAETIRSSGESLLTIINDILDLSKIESGRMELEQQPFEIQECVES 595

Query: 671 AISLVQLYANEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIIST 729
           A+ LV   A  K + +    A ++P +L  D+  ++QI +N+L NA+ FT  G ++ +  
Sbjct: 596 ALDLVAPTAFAKGLDLAYLIAADVPMMLISDVTRLRQILVNLLGNAVKFTEHG-EVTLQV 654

Query: 730 TH-------TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
           +             +++ VRDTG+G+   +L++  + F Q+  S      GTGLGL + K
Sbjct: 655 SRYPDFDLEADQVHLVIEVRDTGIGIPPDKLDRLFRAFSQVDASTTRTYGGTGLGLVICK 714

Query: 783 AMVDANMGKFYIFSTPAKGTLIEI 806
            + +   G   + S P +G+   +
Sbjct: 715 RLSEMLGGGISVESAPGQGSTFRV 738



 Score = 42.7 bits (99), Expect = 0.28,   Method: Composition-based stats.
 Identities = 23/243 (9%), Positives = 65/243 (26%), Gaps = 24/243 (9%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCD-VSDILHIDPNNHIGDLLKRQNTWYG 145
           + +D       +++E  + +G     +IG  + D  +D + +         ++       
Sbjct: 402 FAVDMEWKFVYVNDEAARLLGQPTTSLIGQSIWDSAADRVGLLYAELYTQAMESLKPIRD 461

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI-VHVNRVDNDPRALGKRLDKKF 204
           +    P++     V + +   P            G  I +      +  +A      +  
Sbjct: 462 EVYFAPLD-----VWLAMRIYPWSD---------GLAIYIQDVTAAHAAQAALIEAKEAA 507

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL-T 263
            H    +    +    +          P   +      L +   ++      E       
Sbjct: 508 EHATRARSEFLANMSHEIR-------TPMNGVIGMTGLLLDTPLNERQREYAETIRSSGE 560

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
           S  + + +  D   I   +   +Q    +Q   + + + ++                  P
Sbjct: 561 SLLTIINDILDLSKIESGRMELEQQPFEIQECVESALDLVAPTAFAKGLDLAYLIAADVP 620

Query: 324 ETV 326
             +
Sbjct: 621 MML 623


>gi|326202265|ref|ZP_08192134.1| multi-sensor signal transduction histidine kinase [Clostridium
           papyrosolvens DSM 2782]
 gi|325987383|gb|EGD48210.1| multi-sensor signal transduction histidine kinase [Clostridium
           papyrosolvens DSM 2782]
          Length = 607

 Score =  335 bits (859), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 92/372 (24%), Positives = 172/372 (46%), Gaps = 24/372 (6%)

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
            + +    ++  E  ++ +IL   +DG+   + +G+ +  N A +KL G  V +   K F
Sbjct: 257 SELKKTLSEISSEKNKVETILNYMADGVIAFDLKGMAIHANPAATKLLGSDVVNSPFKEF 316

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT 557
            V +  +       Y  E    +    L  + +         ++     K P      + 
Sbjct: 317 AVKVGLDVRIEDIVYFEESPVRESDTILNDMYVKV-----YFAVFTDTNKKPE--GIIVV 369

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
           +HD +E ++                S + +F+A VSHE+RTP+T+I  ++E +       
Sbjct: 370 LHDDTEQQKL--------------DSMRREFVANVSHELRTPITSIKSYTETLLEGAM-- 413

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
                   +   ID   + +  +V DLL +S++++ +MN   E VSLD  V   +  +Q+
Sbjct: 414 EDQETSKRFLCVIDSEADRMTRLVKDLLQLSRLDNQQMNWKMECVSLDTIVKTIVERLQI 473

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737
            A  K   + +    +IP I AD   ++Q+ +N++SN+I +T   G+I +      N+ +
Sbjct: 474 EAQRKHQKLDSYVIGDIPAISADKDRMEQVIVNLISNSIKYTSEYGEITVYVGIIYND-I 532

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
            ++V DTG+G+ +  L +  + F ++  ++     GTGLGL +AK +V A+ G   I S 
Sbjct: 533 YVKVTDTGIGIPSESLPRVFERFYRVDKARSRDMGGTGLGLSIAKEIVQAHGGTINISSE 592

Query: 798 PAKGTLIEIIFP 809
             KGT + +  P
Sbjct: 593 IGKGTEVTVKLP 604


>gi|283850576|ref|ZP_06367864.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283574147|gb|EFC22119.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 642

 Score =  335 bits (859), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 102/466 (21%), Positives = 189/466 (40%), Gaps = 15/466 (3%)

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
                  +  +L    L D+  +      ++    +                +       
Sbjct: 47  AFLQDHAVDAILLDLGLPDSTGLGTFYALQARHHDLPVIVMTGLNDQEVAVRVLRAGGQD 106

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
                  +           ++ +  ++ +     +  +++E   D IA  +R   +L  N
Sbjct: 107 YLVKGQIDIHLLARSIRYAIERKRLEQALYRREQESKALVEHAPDIIARFDRAHRLLYVN 166

Query: 479 RAVSKLFGYPVEDILRKPFTVF-LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
             V    G    D++ KP   F + +         L  + +    Q LE        +  
Sbjct: 167 PVVEAATGVAPADLIGKPLASFGVVEADRPKAEETLRHVFATGEDQVLEGRIGNRGGDRT 226

Query: 538 L-LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
             +     +              DI++ K  +N+   A++ AE+ +  KS+FLA +SHEI
Sbjct: 227 YEIRFAAEMGADGRVETVLAVARDIAKRKALENEARQAREEAEQANRAKSEFLANMSHEI 286

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTP+  I+G   + + +   P       EY +  D+S   +L IVND+LD+SK+E+GK+ 
Sbjct: 287 RTPMNGIMGMIHLARLKSVDPA----ISEYLDLADKSALHLLGIVNDVLDLSKLEAGKIR 342

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNA 715
           L  +  SL + V   +   ++ A +K + +  + A ++P  I+ D   ++Q+  N++ NA
Sbjct: 343 LFRKRFSLRKEVEAVVEPFRVAAGKKDLGLAHTVAPDLPDSIVGDAGRLRQVLTNLVGNA 402

Query: 716 IHFTPSGGQIIISTTHTSNEEV------ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
           + FTPSG +I +                   V DTG+G+         + F Q   S Q 
Sbjct: 403 LKFTPSG-RIDLRVERAGESAAGGPQLFRFTVTDTGIGIPAVRFAHIFESFEQAHTSAQA 461

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
              GTGLGL +++ +V+   G+  + ST  +G++     PL D +H
Sbjct: 462 LFGGTGLGLTISRQLVELMGGEITVASTEGEGSVFSFTLPL-DVAH 506



 Score = 45.0 bits (105), Expect = 0.047,   Method: Composition-based stats.
 Identities = 9/140 (6%), Positives = 28/140 (20%), Gaps = 7/140 (5%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNTWYG 145
             D    L  ++  +    G     +IG  L     +    P     +  +         
Sbjct: 155 RFDRAHRLLYVNPVVEAATGVAPADLIGKPLASFGVVEADRPKAEETLRHVFATGE---D 211

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +     I         ++        +          +              ++  ++  
Sbjct: 212 QVLEGRIGNRGGDRTYEIRFAAEMGADGRVETV--LAVARDIAKRKALENEARQAREEAE 269

Query: 206 HLHEIKKGHSSVEKEKYDIF 225
             +  K    +    +    
Sbjct: 270 QANRAKSEFLANMSHEIRTP 289


>gi|239904983|ref|YP_002951722.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239794847|dbj|BAH73836.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 1055

 Score =  335 bits (859), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 105/571 (18%), Positives = 205/571 (35%), Gaps = 47/571 (8%)

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
             ++ + +          +                +   ++ E        +  A   E 
Sbjct: 351 VRIVETAQRLGGGDLTARSGLTGGRGTLGRLAQAMDRMAQNLEEDRAELVAARDALAREA 410

Query: 319 ENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIE------IAGGLSTLLD 371
                  +D        + S   +  AN  F  +  Y+    +        A      + 
Sbjct: 411 LRR-QTLMDSSDDGIVVIDSEHRIVEANRRFAEMLGYEQDAVVGMLTWDYEADWDEAAIR 469

Query: 372 APKLSDNNAIK--PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
           +   +             R D +       ++ +    E                     
Sbjct: 470 SSFNNPLAVRTVFESHHRRKDGSVFPVEVSVNGVAIQGE-------------------FY 510

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYP 488
              +  +  + +  ++ +     +  ++ E + D IA+I      +   N A  KLFG  
Sbjct: 511 FVSVARDITERKAVEQALRDSEERYRALFENSLDAIALIEGAPLRLQWVNPAFCKLFGLS 570

Query: 489 VED---ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
            ED   +  +        +   ++   L + L   L    E        + +   + +  
Sbjct: 571 AEDAYALSAEELWSLAHPDDRRLLRPRLEDRLRQGLDLGREC-YRIVCGDGRTRWVEMTG 629

Query: 546 KKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
           ++L   S   +    HDI+E ++    L+ AK  AE  S  KS+FLA +SHEIRTP+  I
Sbjct: 630 RRLGGESASTHMTIYHDITEEQERAALLAAAKDQAEAASRAKSEFLANMSHEIRTPINGI 689

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +   +++              + A     +   +  +++D+LDIS++E+GKM +   P  
Sbjct: 690 VTILQLMVASGL----TEEQADQARMALAASRRLTRLLSDILDISRVEAGKMAIVQAPFH 745

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSG 722
           L  A+ E   L+    +   +    S  + +P  ++ D+   +QI  N+L NA+ FT SG
Sbjct: 746 LRRAMMEVRELLLPAGDPPGVTCTVSIDDAVPEIVIGDVTRFQQILTNLLGNALKFTASG 805

Query: 723 GQIIISTTHTSNE-----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
             + ++     +      +V+  V D+GVG+   +L+    PF Q+    +   +G GLG
Sbjct: 806 -TVSVTAVAQPDASAGHPQVLFSVADSGVGIPKDKLDSLFAPFTQVDQGYRRDYQGAGLG 864

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           L + K +V    G   I S P +G ++    
Sbjct: 865 LAICKRLVGLMGGSIGIESEPGQGVVVHFNL 895



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 36/364 (9%), Positives = 86/364 (23%), Gaps = 44/364 (12%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMR-------LCDVSDILHIDPNNHIGDLLKRQN 141
           ID+   + E +    + +G     ++GM          + +     +    +  + +   
Sbjct: 427 IDSEHRIVEANRRFAEMLGYEQDAVVGMLTWDYEADWDEAAIRSSFNNPLAVRTVFESH- 485

Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
                      +G+   V + +  + I         F    +              +  +
Sbjct: 486 -------HRRKDGSVFPVEVSVNGVAIQGE------FYFVSVARDITERKAVEQALRDSE 532

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP-------HLRMKNKVSSLTEYYAHKDDVL 254
           +++  L E      ++ +         +P                 +      AH DD  
Sbjct: 533 ERYRALFENSLDAIALIEGAPLRLQWVNPAFCKLFGLSAEDAYALSAEELWSLAHPDDRR 592

Query: 255 KTEKYPLLTSEESSLPEQEDFHTI--NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
                      +     +E +  +  +      +     L   S  +   + H       
Sbjct: 593 LLRPRLEDRLRQGLDLGRECYRIVCGDGRTRWVEMTGRRLGGESASTHMTIYHDITEEQE 652

Query: 313 AYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                                          A   FL    ++    I     +  L+ A
Sbjct: 653 RAALLAAAKDQAEAAS--------------RAKSEFLANMSHEIRTPINGIVTILQLMVA 698

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
             L++  A +  M   + R      + +  I       +A+   PF       E      
Sbjct: 699 SGLTEEQADQARMALAASRRLTRLLSDILDISRVEAGKMAIVQAPFHLRRAMMEVRELLL 758

Query: 433 IEPE 436
              +
Sbjct: 759 PAGD 762


>gi|295681521|ref|YP_003610095.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1002]
 gi|295441416|gb|ADG20584.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1002]
          Length = 942

 Score =  335 bits (859), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 109/643 (16%), Positives = 223/643 (34%), Gaps = 28/643 (4%)

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247
            +  +  AL    D     + E  +           +  + +                  
Sbjct: 63  TLTIERLALQLSSDDTVEAVRETHRQVLEQLASFDGLVDRLASATTSEDPGVDPLTLYRS 122

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
           + +   +   +  +  +  +S           ++  +         +    +    S   
Sbjct: 123 SQRFRNIVNIEAQVRETALASRGASASVQPAGVSLASLDADLRGAADALAAAAHRQSDDL 182

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
                    +       T         V        A          +            
Sbjct: 183 TNEYREAVQDLAARADRTRKWVAGGVAVSLLLTWLIAREFLGRHVVARLRRVSHFLRHGD 242

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
                  +  +   +   + R+    +    R      +    L               +
Sbjct: 243 AGNTQAGVPVHGGDEIADMARAVEQFLE-DRRQRRQAEDALKELNAELEARVAQRTAELS 301

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFG 486
               G   E  + +  +  +      L SI+E   D + +   E    +  N+A  +L G
Sbjct: 302 TALAGQAGEIAERQHAEDALRESENFLNSIIENIPDMVFVKEAETFHYVRFNKAAEQLLG 361

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL-SLRIII 545
           Y  E++L +        +  +        +L       + +  + +    +L+ +++I I
Sbjct: 362 YRREELLGRSVHDLFPVDEANFFALKDRAVLESRRMIDIPEEPVHTRHGLRLVHTMKIPI 421

Query: 546 KKLPFSSCYS-LTMHDISEWKQEKNKLSHAKK------------------IAEKESSHKS 586
             +     +      DI+E KQ + +L   ++                   A+  +  KS
Sbjct: 422 VDMRGEPRFLLGISRDITEQKQAEAELRRYREHLEDMIRERTAELAVAKERADAANQAKS 481

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
           +FLA +SHE+RTPL  I+G+++++K        +   ++    I RSG  +L +++D+LD
Sbjct: 482 EFLAHMSHELRTPLNGILGYAQILKRD---TTLDQHQLDGLTVIQRSGEHLLTLIDDILD 538

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVK 705
           I+KIE+G+M L+   V L++ VS     +++ A EK +        ++P  +  D   ++
Sbjct: 539 IAKIEAGRMELNLSDVPLEQFVSFIAETIRVKATEKGLDFVCEMPPDLPACVRVDEIRLR 598

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           Q  LN+LSNAI FT  G  + +         +   VRDTG+G+    LE+   PF Q+ +
Sbjct: 599 QALLNLLSNAIRFTEKGS-VRLRVAFLPPARLCFEVRDTGIGIDQGRLEEIFSPFEQVSD 657

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            +     GTGLGL +++ +V    G+ ++ S    G+   +  
Sbjct: 658 DRHR-FGGTGLGLAISRQLVRLMGGEIHVESRRDIGSAFSLEL 699



 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/162 (11%), Positives = 47/162 (29%), Gaps = 3/162 (1%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEG 154
               ++   + +G    +++G  + D+  +   +        +             P+  
Sbjct: 349 YVRFNKAAEQLLGYRREELLGRSVHDLFPVDEANFFALKDRAVLESRRMIDIPEE-PVHT 407

Query: 155 TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214
            +    +    +PI     E     G  I           A  +R  +    +   +   
Sbjct: 408 RHGLRLVHTMKIPIVDMRGEPRFLLG--ISRDITEQKQAEAELRRYREHLEDMIRERTAE 465

Query: 215 SSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256
            +V KE+ D  +Q        M +++ +          +LK 
Sbjct: 466 LAVAKERADAANQAKSEFLAHMSHELRTPLNGILGYAQILKR 507


>gi|289433261|ref|YP_003463134.1| PAS/PAC sensor hybrid histidine kinase [Dehalococcoides sp. GT]
 gi|288946981|gb|ADC74678.1| PAS/PAC sensor hybrid histidine kinase [Dehalococcoides sp. GT]
          Length = 1402

 Score =  335 bits (859), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 115/737 (15%), Positives = 248/737 (33%), Gaps = 45/737 (6%)

Query: 93   GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPI 152
            G + E +    K  G    +++   + D+   L+   +      L   +    ++     
Sbjct: 549  GKILEANVAATKAYGYSRKQLLNKTIYDIR-PLNTQTSIPQQIALADSDGILFESYHHHK 607

Query: 153  EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212
             G+   V +      + +  R         ++             K + K    +     
Sbjct: 608  NGSIFPVEVSSRGATV-NNTRLI-----VSVIRDITERRKSEDAFKAIYKHQETILATVP 661

Query: 213  GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ 272
               +   E                 + +     YY   +     +  P+   +E++L  +
Sbjct: 662  DIIAEVDENRVYTWINESGREFFGDDVIGKEASYYFEGEQDTYHKIAPVFNGDENTLYIE 721

Query: 273  EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE----GENLTPETVDK 328
                  +  +     +   L++ + ++   LS  +  +     +E           T D 
Sbjct: 722  SWQRRKDGEKRLLGWWSHALKDITGKTVGALSVASDITDRKLMEENLVHSAKEWSITFDS 781

Query: 329  CPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
                  +   G  +   N +F         + I    G          S   +I P  L 
Sbjct: 782  INDMICIVDAGYVIQRVNNAFANSLNLSPAEII----GRHCYELVHATSKPYSICPHKLT 837

Query: 388  RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
                    +      +       + +        +          I  +    + ++  +
Sbjct: 838  LETGLTQTSEYFEENL------GIWVEATTSPIFDASHRVTGSVHIIKDISSRKKSEESL 891

Query: 448  EIEVMQLCSILEATSDGIAI-----INREGIILSTNRAVSKLFGYPVEDILRKPFTVFL- 501
            + E     S+  + SD I +     +N     L  N    K+ GY  E++L         
Sbjct: 892  KAERETYLSLFNSVSDAIFVHRPIPLNMSVKFLEVNDIAVKMLGYSREELLNMEVADITT 951

Query: 502  EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDI 561
            +      +       L+ +   + E+I +  T  +  + LR         +       DI
Sbjct: 952  QIVDDLPLFEKAAARLNNNQEASFERIFVTKTGRKIPVELRSRTIIFEGDTAILTMARDI 1011

Query: 562  SEWKQEKNKLSHAKKIAEKESS--HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
            SE K+ + +    ++ A+  +      +  A ++HEI  PLT +IGF+E++ N+   P  
Sbjct: 1012 SELKKAETERQKLREQADVANRLAAVGEMAAGIAHEINNPLTGVIGFAELLANRPDLPAD 1071

Query: 620  NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
                 +    I+     V++IV  LL  ++    +       V++ + +  +++L     
Sbjct: 1072 ---IQDSIKIINNGSLRVVEIVKRLLTFAR----QTRPIVSKVNITDVIDNSLALRSYVL 1124

Query: 680  NEKRILIRTSFANNIPRILADLRSVKQIALNILSNA---IHFTPSGGQIIISTTHTSNEE 736
                I I   +A N+P I  D   ++Q+ LN++ NA   +      G + + T   + + 
Sbjct: 1125 ETAGISIIRDYAPNLPWIDIDPAQIQQVFLNLILNAEQSMKKIHEKGTLTVKTK-KAGKY 1183

Query: 737  VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
            +++  +D G G+    ++K  +PF    +     G+GTGLGL L++ ++  + GK +  +
Sbjct: 1184 ILISFKDDGAGIPPDVMDKIFQPFFTTKDP----GQGTGLGLSLSQGIILEHGGKIWAEN 1239

Query: 797  TPAKGTLIEIIFPLYDT 813
             P  G    I  P+  T
Sbjct: 1240 NPDGGATFMIELPITTT 1256



 Score =  112 bits (279), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 63/538 (11%), Positives = 145/538 (26%), Gaps = 41/538 (7%)

Query: 58  NQESVSNTNYLDSENTFVFDPIPRT----VRFTWNIDAHGYLKEISEELPKTIGNYAFKM 113
           N +  S+T  + + N                  + +D         +   +  G  A   
Sbjct: 23  NTQIKSDTQGMPAPNLANLSKGELPYSEQADIFFEMDQDLNYIYWDKASEELTGIPAKDA 82

Query: 114 IGMRLCDVSD-ILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172
           IG  +  +       D        LK +       + + I         +++A P     
Sbjct: 83  IGKSIYTLFPKTKGSDIEKAYLKALKTKLP-QHFPSKYQIG--KQQHYFEISAYP----- 134

Query: 173 REFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP 232
              SG   F          + +   ++ D  +S L E       + +++  I++      
Sbjct: 135 -TASGLSVFA--KDITESKETQETLRQSDILYSTLVEKSNDGIIIIQDELLIYANPKMTE 191

Query: 233 HL--RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG 290
                ++         +   +                 +P Q +   +  ++        
Sbjct: 192 LSGFSLEEITGKPMVDFVSPEYRGLVLDRYQRRLAGEKIPNQYEIDIVAKDKRKIPVEIN 251

Query: 291 TLQNNSKESFEYLS----HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYAN 345
                 K     ++      N+        E E      +D       +  +     Y N
Sbjct: 252 ASHIEYKNKPANMAIIHDMTNYKLAQLKLAESEERYRGALDNMLEGCQIIGYDWRYKYLN 311

Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405
            + +  ++               L    + ++        L       IA       I  
Sbjct: 312 KAAVQQSRLTKESLFSHTMM--ELYPGIENTE----LFTNLRLCMEKRIAIKTENQFIFP 365

Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465
           +         +        P       +  +    +I + ++ I   +   + +    GI
Sbjct: 366 DLTEGWFELSM-------EPVPEGIFILSLDITQRKITENQLRISEERFHRVFDQVPIGI 418

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
           AI N +   +  N+ + K+ GY  ++     F         +   + L  +L+       
Sbjct: 419 AIANLDFKFIQVNKTMCKMMGYSEKEFASITFKDLTPAEFLAYDMYQLK-LLNKGAIDHF 477

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT----MHDISEWKQEKNKLSHAKKIAE 579
           E+      K+  +    + +  +       L     + DI++ KQ +  L   K IA+
Sbjct: 478 ERDKQYRHKDGSVFWGHLFVGTIKDDEGKILYYTPCIIDITKRKQAEESLQKYKLIAD 535



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/277 (12%), Positives = 81/277 (29%), Gaps = 12/277 (4%)

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIA 363
                        + + L    V+K      +     L YANP    L+ + S+++I   
Sbjct: 145 DITESKETQETLRQSDILYSTLVEKSNDGIIIIQDELLIYANPKMTELSGF-SLEEITGK 203

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
             +     +P+       +     R     I     +  +  ++            +   
Sbjct: 204 PMVD--FVSPEYRGLVLDR--YQRRLAGEKIPNQYEIDIVAKDKRKIPVEINASHIEYKN 259

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
            P NM    I  +  + ++ + K+     +    L+   +G  II  +      N+A  +
Sbjct: 260 KPANM---AIIHDMTNYKLAQLKLAESEERYRGALDNMLEGCQIIGYDWRYKYLNKAAVQ 316

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
                 E +              + +   L   +   +    E   +     E    L +
Sbjct: 317 QSRLTKESLFSHTMMELYPGIENTELFTNLRLCMEKRIAIKTENQFIFPDLTEGWFELSM 376

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
                       +   DI++ K  +N+L  +++   +
Sbjct: 377 EPVP----EGIFILSLDITQRKITENQLRISEERFHR 409



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/258 (13%), Positives = 92/258 (35%), Gaps = 18/258 (6%)

Query: 342 FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401
            Y + +   LT   + D I     + TL    K SD        L         +  ++ 
Sbjct: 65  IYWDKASEELTGIPAKDAIGK--SIYTLFPKTKGSDIEKAYLKALKTKLPQHFPSKYQI- 121

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
                 +         +  A+             +  +++  +  +    +   +++E +
Sbjct: 122 -----GKQQHYFEISAYPTASGLS------VFAKDITESKETQETLRQSDILYSTLVEKS 170

Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
           +DGI II  E  ++  N  +++L G+ +E+I  KP   F+      ++       L+ + 
Sbjct: 171 NDGIIIIQDEL-LIYANPKMTELSGFSLEEITGKPMVDFVSPEYRGLVLDRYQRRLAGEK 229

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLP--FSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579
               +       K+++ + + I    +           +HD++ +K  + KL+ +++   
Sbjct: 230 I-PNQYEIDIVAKDKRKIPVEINASHIEYKNKPANMAIIHDMTNYKLAQLKLAESEERYR 288

Query: 580 KESSHKSDFLARVSHEIR 597
               +  +    + ++ R
Sbjct: 289 GALDNMLEGCQIIGYDWR 306



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/298 (9%), Positives = 75/298 (25%), Gaps = 26/298 (8%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD----ILHIDPNNHIGDLLKRQNTWY 144
            +DA   ++ ++     ++     ++IG    ++         I P+      L+   T  
Sbjct: 789  VDAGYVIQRVNNAFANSLNLSPAEIIGRHCYELVHATSKPYSICPHKL---TLETGLTQT 845

Query: 145  GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
             +         NL + ++    PI+  +   +G     I+             K   + +
Sbjct: 846  SEYF-----EENLGIWVEATTSPIFDASHRVTG--SVHIIKDISSRKKSEESLKAERETY 898

Query: 205  SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD-DVLKTEKYPLLT 263
              L         V +      S +    +      +    E   + +   + T+    L 
Sbjct: 899  LSLFNSVSDAIFVHRPIPLNMSVKFLEVNDIAVKMLGYSREELLNMEVADITTQIVDDLP 958

Query: 264  SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES-------FEYLSHRNHPSLSAYFD 316
              E +     +    +  +    +    +    +            L+     S     +
Sbjct: 959  LFEKAAARLNNNQEASFERIFVTKTGRKIPVELRSRTIIFEGDTAILTMARDISELKKAE 1018

Query: 317  EGENLTPETVDKCP--IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                   E  D           + G     N     +  +   + +     L   +  
Sbjct: 1019 TERQKLREQADVANRLAAVGEMAAGIAHEINNPLTGVIGF--AELLANRPDLPADIQD 1074


>gi|73749300|ref|YP_308539.1| sensor histidine kinase/response regulator [Dehalococcoides sp.
            CBDB1]
 gi|73661016|emb|CAI83623.1| sensor histidine kinase/response regulator [Dehalococcoides sp.
            CBDB1]
          Length = 1434

 Score =  335 bits (859), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 115/737 (15%), Positives = 248/737 (33%), Gaps = 45/737 (6%)

Query: 93   GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPI 152
            G + E +    K  G    +++   + D+   L+   +      L   +    ++     
Sbjct: 581  GKILEANVAATKAYGYSRKQLLNKTIYDIR-PLNTQTSIPQQIALADSDGILFESYHHHK 639

Query: 153  EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212
             G+   V +      + +  R         ++             K + K    +     
Sbjct: 640  NGSIFPVEVSSRGATV-NNTRLI-----VSVIRDITERRKSEDAFKAIYKHQETILATVP 693

Query: 213  GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ 272
               +   E                 + +     YY   +     +  P+   +E++L  +
Sbjct: 694  DIIAEVDENRVYTWINESGREFFGDDVIGKEASYYFEGEQDTYHKIAPVFNGDENTLYIE 753

Query: 273  EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE----GENLTPETVDK 328
                  +  +     +   L++ + ++   LS  +  +     +E           T D 
Sbjct: 754  SWQRRKDGEKRLLGWWSHALKDITGKTVGALSVASDITDRKLMEENLVHSAKEWSITFDS 813

Query: 329  CPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
                  +   G  +   N +F         + I    G          S   +I P  L 
Sbjct: 814  INDMICIVDAGYVIQRVNNAFANSLNLSPAEII----GRHCYELVHATSKPYSICPHKLT 869

Query: 388  RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
                    +      +       + +        +          I  +    + ++  +
Sbjct: 870  LETGLTQTSEYFEENL------GIWVEATTSPIFDASHRVTGSVHIIKDISSRKKSEESL 923

Query: 448  EIEVMQLCSILEATSDGIAI-----INREGIILSTNRAVSKLFGYPVEDILRKPFTVFL- 501
            + E     S+  + SD I +     +N     L  N    K+ GY  E++L         
Sbjct: 924  KAERETYLSLFNSVSDAIFVHRPIPLNMSVKFLEVNDIAVKMLGYSREELLNMEVADITT 983

Query: 502  EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDI 561
            +      +       L+ +   + E+I +  T  +  + LR         +       DI
Sbjct: 984  QIVDDLPLFEKAAARLNNNQEASFERIFVTKTGRKIPVELRSRTIIFEGDTAILTMARDI 1043

Query: 562  SEWKQEKNKLSHAKKIAEKESS--HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
            SE K+ + +    ++ A+  +      +  A ++HEI  PLT +IGF+E++ N+   P  
Sbjct: 1044 SELKKAETERQKLREQADVANRLAAVGEMAAGIAHEINNPLTGVIGFAELLANRPDLPAD 1103

Query: 620  NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
                 +    I+     V++IV  LL  ++    +       V++ + +  +++L     
Sbjct: 1104 ---IQDSIKIINNGSLRVVEIVKRLLTFAR----QTRPIVSKVNITDVIDNSLALRSYVL 1156

Query: 680  NEKRILIRTSFANNIPRILADLRSVKQIALNILSNA---IHFTPSGGQIIISTTHTSNEE 736
                I I   +A N+P I  D   ++Q+ LN++ NA   +      G + + T   + + 
Sbjct: 1157 ETAGISIIRDYAPNLPWIDIDPAQIQQVFLNLILNAEQSMKKIHEKGTLTVKTK-KAGKY 1215

Query: 737  VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
            +++  +D G G+    ++K  +PF    +     G+GTGLGL L++ ++  + GK +  +
Sbjct: 1216 ILISFKDDGAGIPPDVMDKIFQPFFTTKDP----GQGTGLGLSLSQGIILEHGGKIWAEN 1271

Query: 797  TPAKGTLIEIIFPLYDT 813
             P  G    I  P+  T
Sbjct: 1272 NPDGGATFMIELPITTT 1288



 Score =  112 bits (279), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 63/538 (11%), Positives = 145/538 (26%), Gaps = 41/538 (7%)

Query: 58  NQESVSNTNYLDSENTFVFDPIPRT----VRFTWNIDAHGYLKEISEELPKTIGNYAFKM 113
           N +  S+T  + + N                  + +D         +   +  G  A   
Sbjct: 55  NTQIKSDTQGMPAPNLANLSKGELPYSEQADIFFEMDQDLNYIYWDKASEELTGIPAKDA 114

Query: 114 IGMRLCDVSD-ILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172
           IG  +  +       D        LK +       + + I         +++A P     
Sbjct: 115 IGKSIYTLFPKTKGSDIEKAYLKALKTKLP-QHFPSKYQIG--KQQHYFEISAYP----- 166

Query: 173 REFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP 232
              SG   F          + +   ++ D  +S L E       + +++  I++      
Sbjct: 167 -TASGLSVFA--KDITESKETQETLRQSDILYSTLVEKSNDGIIIIQDELLIYANPKMTE 223

Query: 233 HL--RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG 290
                ++         +   +                 +P Q +   +  ++        
Sbjct: 224 LSGFSLEEITGKPMVDFVSPEYRGLVLDRYQRRLAGEKIPNQYEIDIVAKDKRKIPVEIN 283

Query: 291 TLQNNSKESFEYLS----HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYAN 345
                 K     ++      N+        E E      +D       +  +     Y N
Sbjct: 284 ASHIEYKNKPANMAIIHDMTNYKLAQLKLAESEERYRGALDNMLEGCQIIGYDWRYKYLN 343

Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405
            + +  ++               L    + ++        L       IA       I  
Sbjct: 344 KAAVQQSRLTKESLFSHTMM--ELYPGIENTE----LFTNLRLCMEKRIAIKTENQFIFP 397

Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465
           +         +        P       +  +    +I + ++ I   +   + +    GI
Sbjct: 398 DLTEGWFELSM-------EPVPEGIFILSLDITQRKITENQLRISEERFHRVFDQVPIGI 450

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
           AI N +   +  N+ + K+ GY  ++     F         +   + L  +L+       
Sbjct: 451 AIANLDFKFIQVNKTMCKMMGYSEKEFASITFKDLTPAEFLAYDMYQLK-LLNKGAIDHF 509

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT----MHDISEWKQEKNKLSHAKKIAE 579
           E+      K+  +    + +  +       L     + DI++ KQ +  L   K IA+
Sbjct: 510 ERDKQYRHKDGSVFWGHLFVGTIKDDEGKILYYTPCIIDITKRKQAEESLQKYKLIAD 567



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/277 (12%), Positives = 81/277 (29%), Gaps = 12/277 (4%)

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIA 363
                        + + L    V+K      +     L YANP    L+ + S+++I   
Sbjct: 177 DITESKETQETLRQSDILYSTLVEKSNDGIIIIQDELLIYANPKMTELSGF-SLEEITGK 235

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
             +     +P+       +     R     I     +  +  ++            +   
Sbjct: 236 PMVD--FVSPEYRGLVLDR--YQRRLAGEKIPNQYEIDIVAKDKRKIPVEINASHIEYKN 291

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
            P NM    I  +  + ++ + K+     +    L+   +G  II  +      N+A  +
Sbjct: 292 KPANM---AIIHDMTNYKLAQLKLAESEERYRGALDNMLEGCQIIGYDWRYKYLNKAAVQ 348

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
                 E +              + +   L   +   +    E   +     E    L +
Sbjct: 349 QSRLTKESLFSHTMMELYPGIENTELFTNLRLCMEKRIAIKTENQFIFPDLTEGWFELSM 408

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
                       +   DI++ K  +N+L  +++   +
Sbjct: 409 EPVP----EGIFILSLDITQRKITENQLRISEERFHR 441



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/258 (13%), Positives = 92/258 (35%), Gaps = 18/258 (6%)

Query: 342 FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401
            Y + +   LT   + D I     + TL    K SD        L         +  ++ 
Sbjct: 97  IYWDKASEELTGIPAKDAIGK--SIYTLFPKTKGSDIEKAYLKALKTKLPQHFPSKYQI- 153

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
                 +         +  A+             +  +++  +  +    +   +++E +
Sbjct: 154 -----GKQQHYFEISAYPTASGLS------VFAKDITESKETQETLRQSDILYSTLVEKS 202

Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
           +DGI II  E  ++  N  +++L G+ +E+I  KP   F+      ++       L+ + 
Sbjct: 203 NDGIIIIQDEL-LIYANPKMTELSGFSLEEITGKPMVDFVSPEYRGLVLDRYQRRLAGEK 261

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLP--FSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579
               +       K+++ + + I    +           +HD++ +K  + KL+ +++   
Sbjct: 262 I-PNQYEIDIVAKDKRKIPVEINASHIEYKNKPANMAIIHDMTNYKLAQLKLAESEERYR 320

Query: 580 KESSHKSDFLARVSHEIR 597
               +  +    + ++ R
Sbjct: 321 GALDNMLEGCQIIGYDWR 338



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/298 (9%), Positives = 75/298 (25%), Gaps = 26/298 (8%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD----ILHIDPNNHIGDLLKRQNTWY 144
            +DA   ++ ++     ++     ++IG    ++         I P+      L+   T  
Sbjct: 821  VDAGYVIQRVNNAFANSLNLSPAEIIGRHCYELVHATSKPYSICPHKL---TLETGLTQT 877

Query: 145  GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
             +         NL + ++    PI+  +   +G     I+             K   + +
Sbjct: 878  SEYF-----EENLGIWVEATTSPIFDASHRVTG--SVHIIKDISSRKKSEESLKAERETY 930

Query: 205  SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD-DVLKTEKYPLLT 263
              L         V +      S +    +      +    E   + +   + T+    L 
Sbjct: 931  LSLFNSVSDAIFVHRPIPLNMSVKFLEVNDIAVKMLGYSREELLNMEVADITTQIVDDLP 990

Query: 264  SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES-------FEYLSHRNHPSLSAYFD 316
              E +     +    +  +    +    +    +            L+     S     +
Sbjct: 991  LFEKAAARLNNNQEASFERIFVTKTGRKIPVELRSRTIIFEGDTAILTMARDISELKKAE 1050

Query: 317  EGENLTPETVDKCP--IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                   E  D           + G     N     +  +   + +     L   +  
Sbjct: 1051 TERQKLREQADVANRLAAVGEMAAGIAHEINNPLTGVIGF--AELLANRPDLPADIQD 1106


>gi|146297551|ref|YP_001181322.1| multi-sensor signal transduction histidine kinase
           [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145411127|gb|ABP68131.1| PAS/PAC sensor signal transduction histidine kinase
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 565

 Score =  335 bits (859), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 83/366 (22%), Positives = 162/366 (44%), Gaps = 44/366 (12%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            ++E E  +L  IL+  SDG+  IN +  I+  N + +K     VE+ + K         
Sbjct: 239 SELEFEKQKLERILQNMSDGVVAINSKNEIIHINESANKFLNGRVEEFINKM-------- 290

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR-IIIKKLPFSSCYSLTMHDISE 563
                                +      T ++  L +          +      +HDI++
Sbjct: 291 ---------------GKESGSDTEVTIYTTDDLTLEVSKATFIDSYMNRGLIFIIHDITQ 335

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             +                S +  F+A VSHE+RTP+T I  +SE + +           
Sbjct: 336 QAKL--------------DSMRKQFVANVSHELRTPITTIKTYSETLLD----VDNEETK 377

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            ++ + I +  + +  +V+DLL +S+++SG+  L+ E V+L E V      ++++A +K 
Sbjct: 378 KQFLSVIIKECDRMTRLVSDLLYLSRLDSGENILNLEEVNLSELVRFVCEKLKIHAKKKN 437

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
             +  S   +I   + D   ++Q+ +N++SNA+ +   GGQI +      + ++ + V+D
Sbjct: 438 QTLSCSILQDIVA-MVDRDKIEQVLINLISNAVTYVQEGGQINVVLQKEED-KIKIIVKD 495

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
            G G+   +L +  + F ++  ++     G+GLGL +A  +V A+ GK  + S    GT 
Sbjct: 496 NGPGIPEEDLPRIFERFYRVDKARSRELGGSGLGLSIADEIVKAHGGKILVESKVGSGTT 555

Query: 804 IEIIFP 809
             ++ P
Sbjct: 556 FTVVLP 561


>gi|302409538|ref|XP_003002603.1| ethylene receptor [Verticillium albo-atrum VaMs.102]
 gi|261358636|gb|EEY21064.1| ethylene receptor [Verticillium albo-atrum VaMs.102]
          Length = 1373

 Score =  335 bits (859), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 111/605 (18%), Positives = 209/605 (34%), Gaps = 64/605 (10%)

Query: 261  LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN------SKESFEYLSHRNHPSLSAY 314
            LL +E      +   H     +         + ++      +              ++  
Sbjct: 439  LLQTETPFASMRVGMHNKAGEKLQFDVLGEAITDDITGEFLAGVVTFRDVTSMAQEITDI 498

Query: 315  FDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
             +  E       D  P   +   + G   + N  +   T       +  A         P
Sbjct: 499  KEREEERFKLICDTMPQLVWTATAEGMPDFFNTRWYTYTGLTPETSLGAA------WQTP 552

Query: 374  KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
               D+         RS  T      +      + +    +     +K  +        G 
Sbjct: 553  FHPDDLMETTARWKRSIATGEPYVTQYRCRSKDGDWRWMLGRALPQKNRETGAIEKWFGT 612

Query: 434  EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF-------- 485
              +  ++       +    QL S+L      I  ++R+  +     A+            
Sbjct: 613  CTDVHESIEATLAAKRTRQQLLSVLAHAHVTIFTVDRDHKLTMLEGALIWDLNDGDPTRD 672

Query: 486  -----GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
                 G  + D+  +     L           +  IL    R+ +E+  +    + +   
Sbjct: 673  SSWYIGEDMYDVFNR-LNTQLAPGEEPKFLRPIEGILDGKQRELVEEHGI----DGRWYR 727

Query: 541  LRIIIKKLPFSSCY-----------SLTMHDISEWKQEKNKLSHAKKIAEKE-------- 581
             R +      ++                + D++E K+++  L    K  ++         
Sbjct: 728  TRFLPVPGKRTNGANGSLEACVEGAIGVVMDVTELKEKQTNLEEEFKEKKQAMANAAAAK 787

Query: 582  --SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639
              +  KS FLA +SHEIRTP+T +IG +E++++ +     +    EY   I RS N +L 
Sbjct: 788  EANRLKSQFLANMSHEIRTPITGVIGMAELLQDMKL----DSEQREYVENIQRSANALLT 843

Query: 640  IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR--- 696
            ++ND+LD SK+ESG++++     SL   + +   ++   A  K +   +  +  I     
Sbjct: 844  VINDILDFSKVESGRLDIEEVQFSLSVVLKDVSKMLSFAAERKDLAFLSDVSREITNDMV 903

Query: 697  ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYE 752
            ++ D   V+QI  N+L+N+I FT  G  +  S            +   + DTG+G+    
Sbjct: 904  VIGDPGRVRQIVTNLLTNSIKFTNQG-HVKFSVKKEKETHDSVIIRFTIEDTGIGIEEEV 962

Query: 753  LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
             +K  +PF Q   S   R  GTGLGL + K +++   GK  + S    GT      P   
Sbjct: 963  RKKLFQPFSQGDASTARRFGGTGLGLTICKNLLELMRGKITLESDLGNGTTATFWIPFSK 1022

Query: 813  TSHPH 817
               P 
Sbjct: 1023 PQGPQ 1027



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/139 (11%), Positives = 33/139 (23%), Gaps = 7/139 (5%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQNTW 143
             W   A G     +       G      +G           +          +     +
Sbjct: 516 LVWTATAEGMPDFFNTRWYTYTGLTPETSLGAAWQTPFHPDDLMETTARWKRSIATGEPY 575

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRN-REFSGFRGFGIVHVNRVD-NDPRALGKRLD 201
             +      +G   +  +   ALP  +R        + FG             A  +   
Sbjct: 576 VTQYRCRSKDGD--WRWMLGRALPQKNRETGAIE--KWFGTCTDVHESIEATLAAKRTRQ 631

Query: 202 KKFSHLHEIKKGHSSVEKE 220
           +  S L        +V+++
Sbjct: 632 QLLSVLAHAHVTIFTVDRD 650


>gi|254444470|ref|ZP_05057946.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
 gi|198258778|gb|EDY83086.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
          Length = 1323

 Score =  335 bits (859), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 119/721 (16%), Positives = 253/721 (35%), Gaps = 49/721 (6%)

Query: 133 IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192
           +    +    +  +  +   EG   +V   +    +          R FG+      D  
Sbjct: 216 VERTTRTGEPFDDELQIRTQEGRLKWVR-TIGQAEMVDSQ----CVRVFGVFQDIDDDRR 270

Query: 193 PRALGKRLDKKFSHLHE--IKKGHSSVEKEKYDIFSQQSPP--PHLRMKNKVSSLTEYYA 248
            R   +R       L +   +    + + +                     V        
Sbjct: 271 MREQSERNSALLRSLVDSVTEFSVIATDDDGVITLFNAGAEKLLGYEASEVVGLKKAAIF 330

Query: 249 HKDDVLKTEKYPLL----------------TSEESSLPEQEDFHTINLNQYTKKQYFGTL 292
           H +  ++     L                 +  E +   +  +   +  +         +
Sbjct: 331 HMESEVEARSVELSKELGEDVSGFQTFVAKSLREGAEQREWTYIRKDGERIPVILVVTPM 390

Query: 293 QNNSKESFEYLSHRNHPSLSAYFD----EGENLTPETVDKCPIPFFVYS-HGNLFYANPS 347
           + ++     +L      S     +    E E+    + +   I   + S  G     N +
Sbjct: 391 RGDTGVKSGFLGIARDISARKRAENDLRESESRFRRSFEYSGIGMAIVSLEGKWIQVNQA 450

Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
            L + +YK  + +E++             D+      +L  +      + A       ++
Sbjct: 451 LLDMLEYKREELLELS------FQEITHPDDLDADLALLKETLDGKRQSYALEKRYFDSK 504

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
                +        +   E +       +  +  +    ++    +L    EA   GI  
Sbjct: 505 GKIKWVNLNVSLVRDWKGEPVHFVSQIQDVTERHLLDEDLKQARERLLLATEAGKIGIWD 564

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVF--LEQNTPSVMNHYLTEILSLDLRQTL 525
            +     L  +  + +LFGY  E+        +  +  +    +       ++ + +   
Sbjct: 565 WDAATDTLLWDDQMLRLFGYEKEEFKTPFDAWYNGVHPDDFPELEKKRLAAIAGETQYDE 624

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
           E   +  + E + L    I++   F           D++E   ++ +L+     A+  + 
Sbjct: 625 EFRIVLPSGEIRTLKTLAIVQMDEFGKAKRMVGINWDVTEAVVQREELARLAAEADDANR 684

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
            KS FLA +SHEIRTP+  +IG + ++ +    P  N    + A  I  SG  +L ++ND
Sbjct: 685 AKSQFLANMSHEIRTPINGVIGMTSLLLD---SPGLNSEQSKQARVIQSSGEALLALIND 741

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLR 702
           +LD SK+E+GK++L      L + + +   L+   A EK++       N +P  +  D  
Sbjct: 742 ILDFSKVEAGKLDLEILDFDLRDTLDDLSLLLGQRAGEKQLEFICKADNQVPDRLRGDPG 801

Query: 703 SVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEE--VILRVRDTGVGMTNYELEKAMKP 759
            ++QI +N+  NAI FT +G  ++++S      +   +   V DTG+G++  +       
Sbjct: 802 RLRQILINLAGNAIKFTANGSVKVLVSLADRDEKTALLRFSVIDTGIGISEEKKRLLFSE 861

Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII--FPLYDTSHPH 817
           F Q  +S      GTGLGL ++K +V+   G+  + S    G+        P  ++ + +
Sbjct: 862 FTQADSSTTRLYGGTGLGLAISKQLVNLMDGEIGVTSEKGSGSEFWFTARLPYEESEYKN 921

Query: 818 D 818
           +
Sbjct: 922 E 922



 Score =  147 bits (370), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 58/564 (10%), Positives = 145/564 (25%), Gaps = 38/564 (6%)

Query: 51  QSNFTDQNQESVSNTNYLDS-----ENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKT 105
             + +D++ E V +     +      +  +       +      +  G +  ++++    
Sbjct: 2   SRSESDRDGELVPSARSNSALGKATASALLETLDDHAIVAV--TNPRGIITYVNDQFCAI 59

Query: 106 IGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLA 164
                 +++G     V+   H +     +   +    TW G+       G   ++   + 
Sbjct: 60  SQYSREELMGKTHRVVNSGYHPEVFWKKVWADISSGATWKGQICNRAKFGGLYWLQTTIH 119

Query: 165 ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDI 224
             P+     E   +  F                +           + K  S         
Sbjct: 120 --PVLDERGEIEQYVAFRT--DITEQKQVENKLRNSQMHLQETARLAKVGSWEWDLIDQK 175

Query: 225 FSQQ--SPPPHLRMKNKVSSLTEYYAHKDDVLKTEK----YPLLTSEESSLPEQEDFHTI 278
            S    +   H    +    L    A   +     +        T       ++    T 
Sbjct: 176 LSWSWMTKVIHEVGPDYEPDLDSAIAFYPEGEMRNRINSLVERTTRTGEPFDDELQIRTQ 235

Query: 279 NLNQYTKKQYFGTLQNNS---KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI--PF 333
                  +        +S   +    +    +   +    +    L    VD        
Sbjct: 236 EGRLKWVRTIGQAEMVDSQCVRVFGVFQDIDDDRRMREQSERNSALLRSLVDSVTEFSVI 295

Query: 334 FVYSHGNLFYANPSFLLLTKYKSVDDIE---------IAGGLSTLLDAPKLSDNNAIKPV 384
                G +   N     L  Y++ + +           +   +  ++  K    +     
Sbjct: 296 ATDDDGVITLFNAGAEKLLGYEASEVVGLKKAAIFHMESEVEARSVELSKELGEDVSGFQ 355

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
                     A       I+ + E    +  +               GI  +    +  +
Sbjct: 356 TFVAKSLREGAEQREWTYIRKDGERI-PVILVVTPMRGDTGVKSGFLGIARDISARKRAE 414

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
             +     +     E +  G+AI++ EG  +  N+A+  +  Y  E++L   F      +
Sbjct: 415 NDLRESESRFRRSFEYSGIGMAIVSLEGKWIQVNQALLDMLEYKREELLELSFQEITHPD 474

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHD 560
                   L E L    RQ+          + K+  + + +  +         +   + D
Sbjct: 475 DLDADLALLKETL-DGKRQSYALEKRYFDSKGKIKWVNLNVSLVRDWKGEPVHFVSQIQD 533

Query: 561 ISEWKQEKNKLSHAKKIAEKESSH 584
           ++E       L  A++     +  
Sbjct: 534 VTERHLLDEDLKQARERLLLATEA 557



 Score = 77.8 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 38/391 (9%), Positives = 97/391 (24%), Gaps = 35/391 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-------------- 134
            D  G +   +    K +G  A +++G++   +  +        +               
Sbjct: 297 TDDDGVITLFNAGAEKLLGYEASEVVGLKKAAIFHMESEVEARSVELSKELGEDVSGFQT 356

Query: 135 --DLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192
                 R+     + T    +G    +P+ L   P+       SGF G  I         
Sbjct: 357 FVAKSLREGAEQREWTYIRKDGE--RIPVILVVTPMRGDTGVKSGFLG--IARDISARKR 412

Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY-----Y 247
                +  + +F    E      ++   +            +    +   L        +
Sbjct: 413 AENDLRESESRFRRSFEYSGIGMAIVSLEGKWIQVNQALLDMLEYKREELLELSFQEITH 472

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
               D         L  +  S   ++ +                +++   E   ++S   
Sbjct: 473 PDDLDADLALLKETLDGKRQSYALEKRYFDSKGKIKWVNLNVSLVRDWKGEPVHFVSQIQ 532

Query: 308 HPSLSAYFDEGENLTPETV----DKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEI 362
             +     DE      E +    +   I  + +         +   L L  Y+  +    
Sbjct: 533 DVTERHLLDEDLKQARERLLLATEAGKIGIWDWDAATDTLLWDDQMLRLFGYEKEEF--- 589

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
                   +     D   ++   L                I         +  +   + +
Sbjct: 590 KTPFDAWYNGVHPDDFPELEKKRLAAIAGETQYDE--EFRIVLPSGEIRTLKTLAIVQMD 647

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
           +F +     GI  +  +  + + ++     +
Sbjct: 648 EFGKAKRMVGINWDVTEAVVQREELARLAAE 678



 Score = 54.6 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 36/312 (11%), Positives = 86/312 (27%), Gaps = 24/312 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI-LHIDPNNHIGDLLKR-QNTWYGK 146
           +   G   ++++ L   +     +++ +   +++           + + L   + ++  +
Sbjct: 438 VSLEGKWIQVNQALLDMLEYKREELLELSFQEITHPDDLDADLALLKETLDGKRQSYALE 497

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
              +  +G      ++L    +     E   F     +      +      K+  ++   
Sbjct: 498 KRYFDSKGKIK--WVNLNVSLVRDWKGEPVHF--VSQIQDVTERHLLDEDLKQARERLLL 553

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA-----HKDDVLKTEKYPL 261
             E  K          D          L    K    T + A     H DD  + EK  L
Sbjct: 554 ATEAGKIGIWDWDAATDTLLWDDQMLRLFGYEKEEFKTPFDAWYNGVHPDDFPELEKKRL 613

Query: 262 LT-SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
              + E+   E+      +    T K       +   ++   +      + +    E   
Sbjct: 614 AAIAGETQYDEEFRIVLPSGEIRTLKTLAIVQMDEFGKAKRMVGINWDVTEAVVQREELA 673

Query: 321 LTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
                 D                A   FL    ++    I    G+++LL      ++  
Sbjct: 674 RLAAEADDAN------------RAKSQFLANMSHEIRTPINGVIGMTSLLLDSPGLNSEQ 721

Query: 381 IKPVMLYRSDRT 392
            K   + +S   
Sbjct: 722 SKQARVIQSSGE 733


>gi|197116777|ref|YP_002137204.1| PAS/PAC domain-containing sensor histidine kinase response
           regulator [Geobacter bemidjiensis Bem]
 gi|197086137|gb|ACH37408.1| sensor histidine kinase response regulator, PAS and PAC
           domain-containing protein [Geobacter bemidjiensis Bem]
          Length = 647

 Score =  335 bits (859), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 93/389 (23%), Positives = 159/389 (40%), Gaps = 14/389 (3%)

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
               ++ E  +    + ++        +IL      I   + +      N       G  
Sbjct: 20  RTRELKQEIQERLRAEGQLAEARDHYLNILAEAPALIWRADTQAKCDWFNHTWLSFTGRT 79

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
           +E+     +   +  +                     E        +     +  I +  
Sbjct: 80  MEEEYGDGWAQGVHPDDLERCVAIWLGAFHQKAP--FEMEYRLRRHDGVFRWILDIGRPF 137

Query: 549 PFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
                    Y     DI++ K  + +L  A++ AE  S  K++FLA +SHEIRTP+ +II
Sbjct: 138 SGLDGSFAGYIGYCFDITDRKGAEMELVLAREAAEAASKAKTEFLANMSHEIRTPMNSII 197

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           G ++++              EY   I  S   +L I+ND+LD+SK+E+GK+ L     SL
Sbjct: 198 GMTQLLAYTELSA----EQKEYVEGILTSSEGLLAIINDILDLSKVEAGKIELESRNFSL 253

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG 723
            ++++E I      A+EK + ++ S    IP  ++ D   +KQ+ LNI+ NAI FT SG 
Sbjct: 254 RQSINEIIRTQTAAAHEKGLQLKVSIPEEIPDAVVGDRLRLKQVLLNIIGNAIKFTASGS 313

Query: 724 ---QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
               + ++        +   V DTG+G+    L++   PF Q   S   R  GTGLGL +
Sbjct: 314 IAVTVALAEKKEEAARITFSVTDTGIGIAPESLDRIFAPFAQEDTSTTRRYGGTGLGLSI 373

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +  +V    G+ +  S    G+      P
Sbjct: 374 STKLVRLMGGRIWAESRKNAGSTFHFEIP 402



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 36/423 (8%), Positives = 98/423 (23%), Gaps = 37/423 (8%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD-LLKRQNTW 143
             W  D        +       G    +  G           ++    I      ++  +
Sbjct: 55  LIWRADTQAKCDWFNHTWLSFTGRTMEEEYGDGWAQGVHPDDLERCVAIWLGAFHQKAPF 114

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +  L   +G  ++  I     P    +  F+G+ G+                    + 
Sbjct: 115 EMEYRLRRHDG--VFRWILDIGRPFSGLDGSFAGYIGY--CFDITDRKGAEMELVLAREA 170

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
                + K    +    +              +     S  +    +  +  +E    + 
Sbjct: 171 AEAASKAKTEFLANMSHEIRTPMNSIIGMTQLLAYTELSAEQKEYVEGILTSSEGLLAII 230

Query: 264 SEESSLPEQEDF------HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
           ++   L + E           +L Q   +          ++  +           A   +
Sbjct: 231 NDILDLSKVEAGKIELESRNFSLRQSINEIIRTQTAAAHEKGLQLKVSIPEEIPDAVVGD 290

Query: 318 GENLTPETVDKCPIPFFVYSHGNLFYANP-------SFLLLTKYKSVDDIEIAGGLSTLL 370
              L    ++         + G++            +  +               L  + 
Sbjct: 291 RLRLKQVLLNIIGNAIKFTASGSIAVTVALAEKKEEAARITFSVTDTGIGIAPESLDRIF 350

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
                +           R   T +  S     ++       A         ++       
Sbjct: 351 -----APFAQEDTSTTRRYGGTGLGLSISTKLVRLMGGRIWA--------ESRKNAGSTF 397

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA-VSKLFGYPV 489
           +   P  +  +  + K  +   +  ++ +     I + + +      NR  + KL G   
Sbjct: 398 HFEIPFRLCAKKARPKASLNTAK-KAVWDGAKLRILLADDQ----EMNRNIMEKLLGRLG 452

Query: 490 EDI 492
            D+
Sbjct: 453 HDL 455


>gi|255534205|ref|YP_003094576.1| two-component system sensor histidine kinase/met
           hyl-esterase/transferase hybrid [Flavobacteriaceae
           bacterium 3519-10]
 gi|255340401|gb|ACU06514.1| two-component system sensor histidine kinase/met
           hyl-esterase/transferase hybrid [Flavobacteriaceae
           bacterium 3519-10]
          Length = 747

 Score =  335 bits (859), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 99/736 (13%), Positives = 228/736 (30%), Gaps = 45/736 (6%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY--GKTTLWPI 152
           ++  ++   + IG      +G ++ D              +  + +              
Sbjct: 36  IEYTNQTWLEIIGLNKKTAVGKKIFDFFPEAADQLTAFFEETKETREPASAADFKLRIKR 95

Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212
            G+           P+Y  N  F  +    ++         +   +  +++     E   
Sbjct: 96  SGSVQPAYFSFMYQPVYEDNGAFLYYA--VVILEISALVTIKYKMREDEERLRLATESSL 153

Query: 213 GHSSVEKEKYDIFSQQSPP---PHLRMKNKVSS--LTEYYAHKDDVLKTEKYPLLTSEES 267
             +     K                     +S      +    D +   +       +  
Sbjct: 154 TATWDLNLKTREIVHSPLLAKIFGYEAGENISHEQFRSHLFEYDRINIVDVAYKKALKTG 213

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
               +      N  Q           + ++     L      +     +  ++ +   ++
Sbjct: 214 IYKYEARITDRNGVQKWISTNGKIFSDENELPDRMLGILQDITERKKNEIRQHQSHHQLN 273

Query: 328 KCP----IPFFVYSHGNLFYAN--PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
                  +  F  +   L   N  P FL +  Y    +      + T +    +  +   
Sbjct: 274 TAMEATKLGLFDMNPETLEKYNFSPRFLEIFGYDPSSE-----TIDTHVFEKHIHKDFID 328

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
                 +  +       +   +  +  +   +             N   +G   +  D +
Sbjct: 329 VRAQALQKAQETGDLHYQTKIVLRDG-SVKWIELYGRLLRESAASNAYISGTVRDITDLK 387

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVF 500
             ++K+     +   + +     +     +G +   N++     G   +++L        
Sbjct: 388 NYEQKLSASEKKYRFLADVMPQIVWTGEPDGRLTYFNQSTLNYSGKSYKELLEGDGLNQM 447

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSL 556
           +               +        E          +              +     +  
Sbjct: 448 VHPEEQEETGKRWAASVRTKKPFFFEH--RFRDSNNEYRWFMSKAFPEMDDAGNVTKWVG 505

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
           T  DI + K+++                K DF+   SHE++TP+T I G+ +++K  R  
Sbjct: 506 TSTDIDDMKRQE--------------QQKDDFIKMASHELKTPVTTIKGYVQLLKRTRKD 551

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
              +   +   N I+   N +  ++ DLLDIS++E+G + L+    SL E V+E+I  ++
Sbjct: 552 S-DDKFLVNSLNTIENQVNNLSVLIGDLLDISRMENGYLLLNKHKFSLVELVTESIEDIK 610

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
                  I        +I  + AD   +KQ+  N+L+NAI ++P    + +         
Sbjct: 611 ASEQSHEINFEMKHFADI-EVFADKERLKQVLTNLLTNAIKYSPKANSVNVELWVEDGRG 669

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           + + V D G+GM   EL K  + F ++    +    G G+GL + K ++    GK ++ S
Sbjct: 670 I-VSVEDFGIGMEASELGKIFERFYRVSGDDEKTFPGFGIGLYIVKDIIQRLDGKIWVES 728

Query: 797 TPAKGTLIEIIFPLYD 812
              +G+      P+ +
Sbjct: 729 EKNQGSKFYFSLPVSN 744



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 48/377 (12%), Positives = 102/377 (27%), Gaps = 29/377 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGM-RLCDVSDILHIDP----NNHIGDLLKRQ 140
           TW+++        S  L K  G  A + I   +    S +   D     +      LK  
Sbjct: 156 TWDLNLKTREIVHSPLLAKIFGYEAGENISHEQFR--SHLFEYDRINIVDVAYKKALKTG 213

Query: 141 NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR-ALGKR 199
             +  +  +    G  +   I      I+S   E    R  GI+              + 
Sbjct: 214 -IYKYEARITDRNG--VQKWISTNGK-IFSDENELPD-RMLGILQDITERKKNEIRQHQS 268

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA-----HKDDVL 254
             +  + +   K G   +  E  + ++       +   +  S   + +      HKD + 
Sbjct: 269 HHQLNTAMEATKLGLFDMNPETLEKYNFSPRFLEIFGYDPSSETIDTHVFEKHIHKDFID 328

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS---- 310
              +      E   L  Q      + +    + Y   L+ ++  +          +    
Sbjct: 329 VRAQALQKAQETGDLHYQTKIVLRDGSVKWIELYGRLLRESAASNAYISGTVRDITDLKN 388

Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
                   E       D  P   +     G L Y N S L  +     + +E   GL+ +
Sbjct: 389 YEQKLSASEKKYRFLADVMPQIVWTGEPDGRLTYFNQSTLNYSGKSYKELLEG-DGLNQM 447

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
           +   +  +        +              H  + +           F + +       
Sbjct: 448 VHPEEQEETGKRWAASVRTKKPFFFE-----HRFRDSNNEYRWFMSKAFPEMDDAGNVTK 502

Query: 430 QNGIEPEDVDTRINKRK 446
             G   +  D +  +++
Sbjct: 503 WVGTSTDIDDMKRQEQQ 519



 Score = 51.2 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 13/130 (10%), Positives = 31/130 (23%), Gaps = 7/130 (5%)

Query: 69  DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI-GMRLCDVSDILHI 127
            SE  + F       +  W  +  G L   ++      G    +++ G  L  +      
Sbjct: 395 ASEKKYRFLADVMP-QIVWTGEPDGRLTYFNQSTLNYSGKSYKELLEGDGLNQMVHPEEQ 453

Query: 128 DPNNHIGDL-LKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHV 186
           +         ++ +  ++ +           Y      A P        +  +  G    
Sbjct: 454 EETGKRWAASVRTKKPFFFEHRFRDSNNE--YRWFMSKAFPEMDDAGNVT--KWVGTSTD 509

Query: 187 NRVDNDPRAL 196
                     
Sbjct: 510 IDDMKRQEQQ 519



 Score = 43.5 bits (101), Expect = 0.15,   Method: Composition-based stats.
 Identities = 18/137 (13%), Positives = 44/137 (32%), Gaps = 7/137 (5%)

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
             +IL+    G A++N   +I  TN+   ++ G   +  + K    F        +  + 
Sbjct: 16  FGTILQKAQFGFALVNSSYVIEYTNQTWLEIIGLNKKTAVGKKIFDFF-PEAADQLTAFF 74

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRII--IKKLPFSSC----YSLTMHDISEWKQE 567
            E        +     L   +   +         + +   +     Y++ + +IS     
Sbjct: 75  EETKETREPASAADFKLRIKRSGSVQPAYFSFMYQPVYEDNGAFLYYAVVILEISALVTI 134

Query: 568 KNKLSHAKKIAEKESSH 584
           K K+   ++     +  
Sbjct: 135 KYKMREDEERLRLATES 151


>gi|150375914|ref|YP_001312510.1| multi-sensor hybrid histidine kinase [Sinorhizobium medicae WSM419]
 gi|150030461|gb|ABR62577.1| multi-sensor hybrid histidine kinase [Sinorhizobium medicae WSM419]
          Length = 917

 Score =  335 bits (859), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 121/635 (19%), Positives = 235/635 (37%), Gaps = 31/635 (4%)

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY 246
            RV     A    L      L +     +    E  ++F + +      +          
Sbjct: 31  ARVAALTAAGLVSLVLSSLFLTQALYRSAERMAETRELFDRAASAASAHVAFGDLRYWLT 90

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
                 ++ +++          +  +       +               + ++ +  +  
Sbjct: 91  DLSVSLLMNSQRNADEARARLQVQLERLARHAPVEVRQIGAEVDAYMETALQAADSYTQD 150

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
           N    +A   +    + +                L     +     + + V   E     
Sbjct: 151 NRIVGNALLAKARTHSGKV---------DTDLNRLVEQVKAEAEAARNEVVVQTEKTATT 201

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
           + +L    +   + +  ++L            RL+ +  +         IP E  ++F  
Sbjct: 202 AAILVGGVVLIGSLLTLLVLRSIVGPLR----RLNRVIGDLTEGRYDVEIPQEGGDEFGA 257

Query: 427 NMPQNGIEPEDV-DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
                 +  E   + +  + + E +   + + LE  SDG  + + +  IL  N    ++F
Sbjct: 258 MARTLSLFQESAIEKKKLEDEAERQRRTIAAALEVISDGFVLYDSDDRILVANSKYCEIF 317

Query: 486 -GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE-------K 537
             +    +  + F   +EQN  +                  E++ L              
Sbjct: 318 PSHKPNTLRGRSFREIVEQNLETGQVDLEG---KSPQEWVDERVRLHRDPAGLVDEKRFG 374

Query: 538 LLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
              +RI  +K+P          DI+E KQ + +L  AK  AE  +  KS FLA +SHE+R
Sbjct: 375 ERWVRISKRKIPD-GGTVAVYTDITELKQRQVELERAKSHAESANEAKSQFLASMSHELR 433

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TPL AIIG+SE++  +          +   + I  +G  +L ++ND+LD+SKIE+ KM++
Sbjct: 434 TPLNAIIGYSEMLIEEARDH-KEEELVPDLDKIASAGRHLLTLINDILDLSKIEANKMDV 492

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
             E  SL E + +  + V              F +++ ++ +D   ++Q   N+LSNA  
Sbjct: 493 FLETFSLAELLRDVAATVAPLMARNGNAFTQDFEDDLGKMHSDQTKLRQNLFNLLSNAAK 552

Query: 718 FTPSGGQIIISTTHT---SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           FT  GG++I+         ++ ++ +V DTG+GMT  + ++    F Q   S      GT
Sbjct: 553 FT-KGGRVILRVRREQRAEHDWLVFQVSDTGIGMTPEQQDRLFNAFTQADASTTRNYGGT 611

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GLGL + ++      G   + S   KG++  +  P
Sbjct: 612 GLGLSITRSFCRLIGGVVTVESEAGKGSVFTMEVP 646



 Score = 41.2 bits (95), Expect = 0.72,   Method: Composition-based stats.
 Identities = 29/419 (6%), Positives = 81/419 (19%), Gaps = 43/419 (10%)

Query: 90  DAHGYLKEISEELPKTI-GNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           D+   +   + +  +    +    + G    ++ +         +    K    W  +  
Sbjct: 301 DSDDRILVANSKYCEIFPSHKPNTLRGRSFREIVEQNLETGQVDLEG--KSPQEWVDERV 358

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +   L          +    R+        +          +   +R        +
Sbjct: 359 RLHRDPAGLVDEKRFGERWVRISKRKIPDGGTVAVYTDITELKQRQVELERAKSHAESAN 418

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           E K    +    +              +  +     E     D          L +  + 
Sbjct: 419 EAKSQFLASMSHELRTPLNAIIGYSEMLIEEARDHKEEELVPDLDKIASAGRHLLTLIND 478

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP----- 323
           + +        ++ + +      L  +   +   L  RN  + +  F++           
Sbjct: 479 ILDLSKIEANKMDVFLETFSLAELLRDVAATVAPLMARNGNAFTQDFEDDLGKMHSDQTK 538

Query: 324 ---ETVDKCPIPFFVYSHGNLFYANPSFLL------LTKYKSVDDIEIAGGLSTLLDAPK 374
                 +           G +               + +               L +A  
Sbjct: 539 LRQNLFNLLSNAAKFTKGGRVILRVRREQRAEHDWLVFQVSDTGIGMTPEQQDRLFNAFT 598

Query: 375 LSDNNAIK-----------------------PVMLYRSDRTCIAASARLHTIQWNRENSL 411
            +D +  +                        V       +                   
Sbjct: 599 QADASTTRNYGGTGLGLSITRSFCRLIGGVVTVESEAGKGSVFTMEVPAKCESEVDRPPP 658

Query: 412 AMTFIPFEKANQF---PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
                            E   +N I     +  +   +       L +  E   D I +
Sbjct: 659 EQAAQVRSGRTALIIDDEPAARNLIAKALAEAGLAAIEASNGQEGLAAAREHRPDAIIL 717


>gi|310819599|ref|YP_003951957.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309392671|gb|ADO70130.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 561

 Score =  335 bits (859), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 112/556 (20%), Positives = 214/556 (38%), Gaps = 54/556 (9%)

Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLT--KYK 355
               L+       S      + +    +D    P  F  + G+L  AN     L      
Sbjct: 9   PSSPLTEEPSSPGSPATPPDQLILLRLLDAVTDPLLFTNAEGHLRIANARARELLVAGEG 68

Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIA------ASARLHTIQWNREN 409
           + +    A  L+  L    L+         + R + + +           L T       
Sbjct: 69  ASEGHRRAVELNQHLFTTALASAATGGASTVRRRELSLVDPLQGTDLLFELVTTPMREAQ 128

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469
            +                    G     +  R ++++   E ++L  IL++ ++ I + +
Sbjct: 129 GVVGVVSVLRNVTDLGRATQALGESYRRL--RASEQEARSERLRLDLILDSVANPIILTD 186

Query: 470 REGIILSTNRAVSKLFGYPV--EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
             G ++  N    +LF  P    +  R+         +      +L+ +LS    +    
Sbjct: 187 PSGSMVLMNDPAERLFSAPAGSGEASRRRVRTNDAHFS-----SFLSHLLSQGSARRWRG 241

Query: 528 ITLGSTK-EEKLLSLRIIIKKLPFSSC----YSLTMHDISEWK----------------- 565
                       L +  +  K+             +HD +E +                 
Sbjct: 242 ELHLMEPTTGTPLPMEAVASKVLTDQGETTSIVTLLHDRTETREKARLLEQLKTASSELE 301

Query: 566 -----------QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                      ++  KL       E+ S+ KS FLA +SHE RTPL AI+G++ ++    
Sbjct: 302 AKVHTATAELAEQNEKLRRQALQLEQASAAKSQFLANMSHEFRTPLNAILGYTNMLLQGV 361

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
            G +  P        ID +G  +L ++N++LDI++IE+G+M L+    +L E + E ++ 
Sbjct: 362 SGEMM-PTQKRNLQRIDSNGRHLLQVINEILDITRIEAGRMPLNLSDFALPELLQEVMAE 420

Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
           +       ++++  +    +P + +D + VKQI LN+LSNA+ FT  G  I ++  +  +
Sbjct: 421 LDPIIARTKLVVDAALPPRLPEVHSDRQKVKQIVLNLLSNALKFTHEGS-IQVNAEYQPS 479

Query: 735 EE-VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
              V++ V+DTG+G+     EK  + F Q+ +S      GTGLGL + + +     G+  
Sbjct: 480 LSLVLISVKDTGIGIAQEHQEKIFEDFQQVDSSPTRAYGGTGLGLSICRRLATMLGGRIT 539

Query: 794 IFSTPAKGTLIEIIFP 809
           + S   +G+   +  P
Sbjct: 540 VQSALGQGSTFTLHLP 555


>gi|115523889|ref|YP_780800.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas
           palustris BisA53]
 gi|115517836|gb|ABJ05820.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas
           palustris BisA53]
          Length = 615

 Score =  335 bits (859), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 129/586 (22%), Positives = 224/586 (38%), Gaps = 37/586 (6%)

Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLN-QYTKKQYFGTLQNNSKE-SFEY 302
           +   H              +  +                   +     L+  +       
Sbjct: 12  DTLLHPSARYDALASARHRAFIAPRLFGAFAALAAFPIYLAFRGAPTGLEVAAFAWLIAP 71

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEI 362
           +      S +  F+    L+  ++    +   + + G    A+ + + L        +  
Sbjct: 72  ILLSYFLSRTGRFESANVLSSLSLAALVMAVAINTGG---IASFAAIWLVVIPLESALSA 128

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
           +  +     A  L+   A+  +  +               +      S  +       A 
Sbjct: 129 SRRVVAFASAVALAGALALIAMSQFDWLPASQVGELSHGALMAVGIGSALLYCCGLAYAV 188

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
           +                 R +   +  E  +   +    SD I+   R G +   + A  
Sbjct: 189 E--------------SLARTSVALLSAEEDRYRLLARNMSDVISCHRRNGAVQFISPAAE 234

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK----- 537
            L G P   +L       +           L++       +++E          +     
Sbjct: 235 ALLGTPSSRLLGHGLFDRVHVVDRPAFLTALSDAGRGGEVRSVEFRVRRELPRGERSRTA 294

Query: 538 ---LLSLRIIIKKLPFSSC---------YSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
               L L +  + L  +               M D+++ KQ++  L  A+  A +  + +
Sbjct: 295 AADFLWLEMRCRPLEQTVGGHVAAPDTEVVAVMRDVTDRKQQELALEQARAEAARADASR 354

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
           S FLA VSHE+RTPL AIIGFSE+I  ++   +   R  EYA  I+ SG  +L +VN +L
Sbjct: 355 SRFLATVSHELRTPLNAIIGFSEMIVQEQALMISAERRREYAQLINDSGQHLLSVVNGIL 414

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
           D+SK++SG   +  EP +   A+    +L+ L A +  I + T   +++P +  D R+ K
Sbjct: 415 DMSKMDSGNFEILPEPFAPRPALLNCCNLLALKARDSGIDLVTRAPDDLPEVNGDPRAFK 474

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           QI LN++SNAI FT  GG + +S        + LRV DTGVG+   +LE+   PF Q   
Sbjct: 475 QIVLNLVSNAIKFTERGGTVTVSAAVE-GAHLALRVVDTGVGIAADDLERIGDPFFQAGK 533

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
           + Q R EGTGLGL + K +V  + G+  + S   KGT +  + PL 
Sbjct: 534 TYQRRHEGTGLGLSIVKTLVALHGGELTVASQLDKGTTVTAMLPLA 579


>gi|254412478|ref|ZP_05026252.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196180788|gb|EDX75778.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 1082

 Score =  335 bits (859), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 120/654 (18%), Positives = 236/654 (36%), Gaps = 58/654 (8%)

Query: 191 NDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKN----KVSSLTEY 246
           N         D   +   +       + +   +        P  R        V  L   
Sbjct: 206 NQQAKQILAQDLDPNLHTDQLCSTYQLYRADTNQLYPLDRLPIARSLQGETVTVDDLEVR 265

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKK---QYFGTLQNNSKESFEYL 303
           +A++   L+ +  P+   + + L     F  I   + T+K   +Y  TL+   ++  + L
Sbjct: 266 HANQRIPLEMQTMPIYDEQGTLLYGISVFKDITARKRTEKILTEYNQTLEQAVRDRTQEL 325

Query: 304 S---------HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKY 354
                           L       E       +  P    +         N   + +   
Sbjct: 326 ETKNQQLHQEIEERKLLEQKLRTSEGKMRAVFEAMPDIILIIDP----QTND--IQVAPT 379

Query: 355 KSVDDIEIAGGLSTLLDAPKLSDN---NAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411
           +   DIE +  L        L  +   +  + +      +  I     L+    + +  +
Sbjct: 380 RPTRDIEKSIPLINQTIEQFLDSDNTQSWFQQIHQVIETQEPIHFDYSLN----DADQRV 435

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-R 470
             T       N          +     D +  +  +     +      ++   + I    
Sbjct: 436 WFTASIAPLPNNS-----VIWVARNITDRKRTQFALYQSEEKFARAFRSSPSAMTITRLS 490

Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530
           +G  +  N +  +  GY   +I+ +              N  L  I +  + +  E    
Sbjct: 491 DGCHIDVNDSFCQFTGYSAPEIIGRTALDLNLWVNQKDRNRMLKAISNKGIIRNYEFEFR 550

Query: 531 GSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
             + + +   L      L   +C      DIS+ KQ +  L  AK  AE+ +  KS FL+
Sbjct: 551 TKSGDIRTALLSAEQINLDEQTCLIAVSQDISDRKQVEFALQRAKDTAEQANRAKSQFLS 610

Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650
            +SHE+RTPL AIIGF++++            + ++   I RSG  +L ++N++L +SK+
Sbjct: 611 NMSHELRTPLNAIIGFAQLLGRD---SSLTQEHHDHIGIICRSGEHLLSLINNVLQLSKV 667

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIAL 709
           E+G++ L+     L   +     + +L A  K + +   +   +PR +  D   ++Q+ +
Sbjct: 668 EAGQVKLNCYSFDLYGMLQVLEEMFKLQAENKGLQLVVDYDEALPRYVETDEGKLRQVLI 727

Query: 710 NILSNAIHFTPSGGQIIISTTHTSNEE-----------------VILRVRDTGVGMTNYE 752
           N+++NAI FT  GG + +       E                  +   + DTG+G+ + E
Sbjct: 728 NLVNNAIKFTSQGG-VTLRVKAVQGEMGESTRHPTFNTLPIPQKLRFEIEDTGLGIASEE 786

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           +E   + F Q    +    EGTGLGLP+++  V    G+ ++ S   +G++   
Sbjct: 787 IESLFEAFVQTEAGR-KSLEGTGLGLPISQQFVRLMGGEIHVSSRLNQGSIFTF 839



 Score = 78.5 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 44/366 (12%), Positives = 107/366 (29%), Gaps = 50/366 (13%)

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE---YLSHRNHPSLSAYFDEGE 319
               + +  Q  FH +N      KQ    L+   + S E    +  + H        E E
Sbjct: 120 AELLARIQTQLHFHKLNAENLRLKQENTDLKILLETSTEHGDLVFEQLHDQAEEAVRESE 179

Query: 320 NLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIE----------------I 362
           +   + ++  P+   V    G L++ N     +       ++                  
Sbjct: 180 HRLAQFLEAVPVGVLVVEASGKLYFMNQQAKQILAQDLDPNLHTDQLCSTYQLYRADTNQ 239

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA---------- 412
              L  L  A  L         +  R     I    +   I   +   L           
Sbjct: 240 LYPLDRLPIARSLQGETVTVDDLEVRHANQRIPLEMQTMPIYDEQGTLLYGISVFKDITA 299

Query: 413 ------------MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
                        T     +            +  E  + ++ ++K+     ++ ++ EA
Sbjct: 300 RKRTEKILTEYNQTLEQAVRDRTQELETKNQQLHQEIEERKLLEQKLRTSEGKMRAVFEA 359

Query: 461 TSDGIAIINREGIILST--NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
             D I II+ +   +     R    +       ++ +    FL+ +        + +++ 
Sbjct: 360 MPDIILIIDPQTNDIQVAPTRPTRDI--EKSIPLINQTIEQFLDSDNTQSWFQQIHQVIE 417

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578
              ++ +      +  +++ +     I  LP +S       +I++ K+ +  L  +++  
Sbjct: 418 T--QEPIHFDYSLNDADQR-VWFTASIAPLPNNS-VIWVARNITDRKRTQFALYQSEEKF 473

Query: 579 EKESSH 584
            +    
Sbjct: 474 ARAFRS 479



 Score = 74.3 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 20/158 (12%), Positives = 48/158 (30%), Gaps = 10/158 (6%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE-----DILRK 495
              +  +     +L   LEA   G+ ++   G +   N+   ++    ++     D L  
Sbjct: 169 DQAEEAVRESEHRLAQFLEAVPVGVLVVEASGKLYFMNQQAKQILAQDLDPNLHTDQLCS 228

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555
            + ++            L    SL                ++ + L +    +       
Sbjct: 229 TYQLYRADTNQLYPLDRLPIARSLQGETVTVDDLEVRHANQR-IPLEMQTMPIYDEQGTL 287

Query: 556 L----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
           L       DI+  K+ +  L+   +  E+    ++  L
Sbjct: 288 LYGISVFKDITARKRTEKILTEYNQTLEQAVRDRTQEL 325



 Score = 44.2 bits (103), Expect = 0.082,   Method: Composition-based stats.
 Identities = 11/134 (8%), Positives = 34/134 (25%), Gaps = 5/134 (3%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151
            G   ++++   +  G  A ++IG    D++  ++    N +   +  +         + 
Sbjct: 491 DGCHIDVNDSFCQFTGYSAPEIIGRTALDLNLWVNQKDRNRMLKAISNKGIIRNYEFEFR 550

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
            +  ++   +  A                  +              +R        +  K
Sbjct: 551 TKSGDIRTALLSAEQINLDEQTCL-----IAVSQDISDRKQVEFALQRAKDTAEQANRAK 605

Query: 212 KGHSSVEKEKYDIF 225
               S    +    
Sbjct: 606 SQFLSNMSHELRTP 619


>gi|91786123|ref|YP_547075.1| multi-sensor hybrid histidine kinase [Polaromonas sp. JS666]
 gi|91695348|gb|ABE42177.1| multi-sensor hybrid histidine kinase [Polaromonas sp. JS666]
          Length = 953

 Score =  335 bits (859), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 99/619 (15%), Positives = 207/619 (33%), Gaps = 38/619 (6%)

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
               +      +++      +  +     R     ++         +    ++   L   
Sbjct: 96  RSANLLPDQPELDELIGQRRTVTNQVVAARQTEGQAAAVAILNSDANRQLRQRTDSLLET 155

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS---------HRNHPSLSAYFD 316
             +             + + ++    +          L+                 A   
Sbjct: 156 ARNRENLAWQRAQADAERSAQRVQHFIIAAGLLFLAMLAWMVYVVTHYEEVRKRAEAKLR 215

Query: 317 EGENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
           + E +T    +              +  AN + L L  Y+  + I         L   +L
Sbjct: 216 DSETMTRMITESMADAVITTTDDDIVLQANAAALQLFGYEKSELIGRDVSE---LVPERL 272

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
                     L         A   + +++ +     A                    +  
Sbjct: 273 RGQYKSFTAALRARPEPFRMADHDVRSMRKDGTEFPASVSFSDV---HVGGQRLFTALIS 329

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
           ++ + R     +     QL  I +     IA ++ E      NRA  ++ G   E I   
Sbjct: 330 DNTERRRITEALRASESQLRQITDTVPALIAYLDLEQRFRFHNRAYEEVLGLEFERIDGH 389

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--- 552
                L       +   + E L        E++ +    + K  +++   +    +    
Sbjct: 390 TLAEVLGPQLYEGVQDKVDEALR-GYAVQYERVQVTPQGDRKNYAMQYFPRYGEGADEGK 448

Query: 553 --CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
              +     DI+E K+                  K++F++ VSHE+RTPLT+I G   +I
Sbjct: 449 VVGFFSLGTDITELKRI--------------DRMKTEFVSTVSHELRTPLTSIRGSLGLI 494

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
                G L              +   ++ ++ND+LD  KIESGK+ L+ +   L   + +
Sbjct: 495 SGGVAGELP-EAVKSLVAIATSNCERLIRLINDMLDSEKIESGKLRLNLQAAELKPLLRQ 553

Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
           A++  + +A +  + +R    +   +   D   + Q+  N+LSNA+ F+P+G  + +  +
Sbjct: 554 ALAANEGFAAQHGVKLRLRAPDAALQARIDGDRLMQVMTNLLSNAVKFSPAGSTVEVMLS 613

Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
            T+  +V + V D G G+      +  + F Q  +S   +  G+GLGL +++ ++++  G
Sbjct: 614 RTAR-QVRVEVSDQGPGIPEAFRNRIFQKFSQADSSDTRQKGGSGLGLNISRGLIESMGG 672

Query: 791 KFYIFSTPAKGTLIEIIFP 809
           +    S    GT      P
Sbjct: 673 RIGFNSNGGAGTTFFFELP 691



 Score = 46.9 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 42/390 (10%), Positives = 90/390 (23%), Gaps = 19/390 (4%)

Query: 26  SKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYL-DSENTFVFDPIPRTVR 84
           S +K    F    S  +         +     N E    T  L  SE+            
Sbjct: 299 SMRKDGTEFPASVSFSDVHVGGQRLFTALISDNTERRRITEALRASESQLRQITDTVPAL 358

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTW 143
             + +D     +  +    + +G    ++ G  L +V      +   + + + L R    
Sbjct: 359 IAY-LDLEQRFRFHNRAYEEVLGLEFERIDGHTLAEVLGPQLYEGVQDKVDEAL-RGYAV 416

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSR---NREFSGFRGFGIVHVNRVDNDPRALGKRL 200
             +      +G        +   P Y       +  GF  F +            +    
Sbjct: 417 QYERVQVTPQGD--RKNYAMQYFPRYGEGADEGKVVGF--FSLGTDITELKRIDRMKTEF 472

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
               SH                      S      +   V SL        + L      
Sbjct: 473 VSTVSHELRTPLTSIRGS------LGLISGGVAGELPEAVKSLVAIATSNCERLIRLIND 526

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
           +L SE+    +          +   +Q     +  + +    L  R   +      +G+ 
Sbjct: 527 MLDSEKIESGKLRLNLQAAELKPLLRQALAANEGFAAQHGVKLRLRAPDAALQARIDGDR 586

Query: 321 LTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
           L     +           G+            +   V+  +   G+            + 
Sbjct: 587 LMQVMTNLLSNAVKFSPAGSTVEV--MLSRTARQVRVEVSDQGPGIPEAFRNRIFQKFSQ 644

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENS 410
                  +   + +  +     I+      
Sbjct: 645 ADSSDTRQKGGSGLGLNISRGLIESMGGRI 674



 Score = 46.2 bits (108), Expect = 0.025,   Method: Composition-based stats.
 Identities = 16/193 (8%), Positives = 49/193 (25%), Gaps = 18/193 (9%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ-NTWY---GKTTLW 150
           + + +    +  G    ++IG  + ++               L+ +   +          
Sbjct: 241 VLQANAAALQLFGYEKSELIGRDVSELVPERLRGQYKSFTAALRARPEPFRMADHDVRSM 300

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGF-GIVHVNRVDNDPRALGKRLDKKFSHLHE 209
             +GT     +  +       +    G R F  ++  N          +  + +   + +
Sbjct: 301 RKDGTEFPASVSFS-------DVHVGGQRLFTALISDNTERRRITEALRASESQLRQITD 353

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
                 +    +           H R   +V  L         + +     L    +  +
Sbjct: 354 TVPALIAYLDLEQRFR------FHNRAYEEVLGLEFERIDGHTLAEVLGPQLYEGVQDKV 407

Query: 270 PEQEDFHTINLNQ 282
            E    + +   +
Sbjct: 408 DEALRGYAVQYER 420


>gi|255036012|ref|YP_003086633.1| multi-sensor hybrid histidine kinase [Dyadobacter fermentans DSM
           18053]
 gi|254948768|gb|ACT93468.1| multi-sensor hybrid histidine kinase [Dyadobacter fermentans DSM
           18053]
          Length = 1084

 Score =  335 bits (859), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 105/740 (14%), Positives = 240/740 (32%), Gaps = 82/740 (11%)

Query: 133 IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192
           I   ++R+ T+  +  ++  +GT     +   A+PI  +N      +  G          
Sbjct: 234 IQHAIQRKTTFEVEHQVFRRDGTVG--WVFSRAVPILDKNGAIR--QWVGAASDITSRKR 289

Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKE-------------------------------- 220
                  + +    L  + +     +                                  
Sbjct: 290 DERRQDFMLRLVDRLRPLAEPEQVADMACQMLVEHLNASRAQYTEVKGTAGKEVGTVRGE 349

Query: 221 ----------KYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270
                     +Y       P   +    +   +T+    +    + ++        +++ 
Sbjct: 350 YVLTGRPMIREYAYAGFGEPMVAILRSGQTLVITDTDNDQRLTDEQKQSYAAVDSPAAIA 409

Query: 271 EQEDFH---------TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
                H           +  +    +     +  +  ++  +       LS   ++   L
Sbjct: 410 VPLVKHGNMVGTFTIHHSAPREWSAEEIAITEEIADRTWTAVERAKAEELSRISEKRLRL 469

Query: 322 TPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
             E  D   +  + +    NL   N     +      +          L       D+  
Sbjct: 470 ATEAAD---MATWEWDLVSNLVIWNEQHFRIFGLSPQEA----PVHPELFFRHIHPDDRD 522

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
               +L RS +  +        ++ +    L ++             +  +GI  +    
Sbjct: 523 RVYALLQRSIQEDVEFDTEFRAVREDG-VGLWISGYGRVMERNQSGPILMSGIMLDITAR 581

Query: 441 RINKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
             ++  +     +  +ILE+  D  I  ++    +   N     + GY   +I+ K   +
Sbjct: 582 NESEAALHRIQARQGAILESAKDYAIFTLDLGLRVRDWNSGAEHVLGYSEAEIIGKSGEI 641

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YS 555
           F      +       +  ++      E        +        I   L   +       
Sbjct: 642 FFVPEDRAEGAPEYEKNKAI-QEGRAENERWHLRSDGSRFYGSGITSPLLDEAGNLIGLL 700

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
             M D++  KQ    L             K +FLA ++HE+R PL  +     ++K  R 
Sbjct: 701 KVMRDLTMQKQTDEALKI-------ADKRKDEFLAMLAHELRNPLATVRNGISLLKVTRQ 753

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
               + +  +  + +DR    ++ +++DLLD+S++  GK+ L  E + +   ++ A+  +
Sbjct: 754 ---NDAQMSDVVDMMDRQATHLVRMIDDLLDVSRVTQGKIQLQLERLDMAALINSAVKSI 810

Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
           +     +R ++          +  D   + Q+  N+L+N++ +T   G + ++ T     
Sbjct: 811 RSQYEARRKVLDVQTGFAKLIVEGDATRLSQVVTNLLTNSLRYTGDEGHVWVTLTSQD-G 869

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
           E ++RVRD G+G+T  +     + F Q  NS      G G+GL + + +V  + G+    
Sbjct: 870 EAVIRVRDNGIGLTPEQQTSVFELFVQGDNSLARTQGGLGIGLTIVRQLVGMHGGRVEAK 929

Query: 796 S-TPAKGTLIEIIFPLYDTS 814
           S     G+   I  PL +++
Sbjct: 930 SPGIGMGSEFTIYLPLLESN 949



 Score =  105 bits (263), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 49/562 (8%), Positives = 140/562 (24%), Gaps = 53/562 (9%)

Query: 78  PIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL 137
             P      W       ++  ++   + +G+     +G  +                 + 
Sbjct: 48  AAPFPNLLLW---GEDLIQIYNDAYLEIMGDKHPGGLGQPVRQSWADAGDVHEPTYHRVW 104

Query: 138 KRQN-TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSG--FRGFGIVHVNRVDNDPR 194
             ++ T+          G+       +A  P+   +    G     F   +      +  
Sbjct: 105 AGESLTFEDVPQAITRAGSLQEAWYTIAYSPVRDDSGNMGGILVAAFETTNQLLERKERE 164

Query: 195 ALGKRL---DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD 251
              + L   +++F+ L              +    Q     +L+    ++         +
Sbjct: 165 NALQELAQSEERFARLVGATSDIIYTMSADWRHMIQLDGKEYLQSTMTLNGTWMEEYIPE 224

Query: 252 DVLKTEKYPLLTSEESSLPEQEDFH--TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
           +        +  + +     + +      +            + + +    +++   +  
Sbjct: 225 EERLRVWTVIQHAIQRKTTFEVEHQVFRRDGTVGWVFSRAVPILDKNGAIRQWVGAASDI 284

Query: 310 SLSAYFDEGENLTPETVDKC-PIPFFVYSHGN-----LFYANPSFLLLTKY--KSVDDIE 361
           +     +  ++     VD+  P+              + + N S    T+    +  ++ 
Sbjct: 285 TSRKRDERRQDFMLRLVDRLRPLAEPEQVADMACQMLVEHLNASRAQYTEVKGTAGKEVG 344

Query: 362 IAGGLSTLLDAPKLSD---NNAIKPVMLYRSDRTCIAAS--------------------- 397
              G   L   P + +       +P++        +  +                     
Sbjct: 345 TVRGEYVLTGRPMIREYAYAGFGEPMVAILRSGQTLVITDTDNDQRLTDEQKQSYAAVDS 404

Query: 398 --ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI----EV 451
             A    +  +       T           E +       +   T + + K E       
Sbjct: 405 PAAIAVPLVKHGNMVGTFTIHHSAPREWSAEEIAITEEIADRTWTAVERAKAEELSRISE 464

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP--FTVFLEQNTPSVM 509
            +L    EA        +    ++  N    ++FG   ++    P  F   +  +    +
Sbjct: 465 KRLRLATEAADMATWEWDLVSNLVIWNEQHFRIFGLSPQEAPVHPELFFRHIHPDDRDRV 524

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS--LTMHDISEWKQE 567
              L   +  D+    E   +        +S    + +   S        M DI+   + 
Sbjct: 525 YALLQRSIQEDVEFDTEFRAVREDGVGLWISGYGRVMERNQSGPILMSGIMLDITARNES 584

Query: 568 KNKLSHAKKIAEKESSHKSDFL 589
           +  L   +           D+ 
Sbjct: 585 EAALHRIQARQGAILESAKDYA 606



 Score = 74.7 bits (182), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 26/302 (8%), Positives = 83/302 (27%), Gaps = 38/302 (12%)

Query: 313 AYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
           A + +        V   P P   ++    +   N ++L +   K        GGL   + 
Sbjct: 33  ADWSQSLRTAAALVLAAPFPNLLLWGEDLIQIYNDAYLEIMGDK------HPGGLGQPVR 86

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR---ENSLAMTFIPFEKANQFPENM 428
                  +  +P          +        I       E    + + P    +     +
Sbjct: 87  QSWADAGDVHEPTYHRVWAGESLTFEDVPQAITRAGSLQEAWYTIAYSPVRDDSGNMGGI 146

Query: 429 PQNGIEP-----EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
                E      E  +     +++     +   ++ ATSD I  ++ +            
Sbjct: 147 LVAAFETTNQLLERKERENALQELAQSEERFARLVGATSDIIYTMSADWR---------H 197

Query: 484 LFGYPVED-------ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
           +     ++       +       ++ +     +   +   +       +E        + 
Sbjct: 198 MIQLDGKEYLQSTMTLNGTWMEEYIPEEERLRVWTVIQHAIQRKTTFEVEHQVFRR--DG 255

Query: 537 KLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKES-SHKSDFLAR 591
            +  +      +   +     +     DI+  K+++ +     ++ ++     + + +A 
Sbjct: 256 TVGWVFSRAVPILDKNGAIRQWVGAASDITSRKRDERRQDFMLRLVDRLRPLAEPEQVAD 315

Query: 592 VS 593
           ++
Sbjct: 316 MA 317



 Score = 44.2 bits (103), Expect = 0.090,   Method: Composition-based stats.
 Identities = 12/141 (8%), Positives = 33/141 (23%), Gaps = 8/141 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI---DPNNHIGDLLKRQNT 142
            + +D    +++ +      +G    ++IG                P       ++    
Sbjct: 607 IFTLDLGLRVRDWNSGAEHVLGYSEAEIIGKSGEIFFVPEDRAEGAPEYEKNKAIQEGRA 666

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
              +      +G+  Y     +  P+        G     ++    +        K  DK
Sbjct: 667 -ENERWHLRSDGSRFYGSGITS--PLLDEAGNLIGLLK--VMRDLTMQKQTDEALKIADK 721

Query: 203 KFSHLHEIKKGHSSVEKEKYD 223
           +      +             
Sbjct: 722 RKDEFLAMLAHELRNPLATVR 742


>gi|330828889|ref|YP_004391841.1| Virulence sensor protein BvgS [Aeromonas veronii B565]
 gi|328804025|gb|AEB49224.1| Virulence sensor protein BvgS, putative [Aeromonas veronii B565]
          Length = 1414

 Score =  335 bits (859), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 94/519 (18%), Positives = 196/519 (37%), Gaps = 25/519 (4%)

Query: 304  SHRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEI 362
                        +E        +D  P    +      L  +N ++  L      ++ + 
Sbjct: 542  EIVQRQRAEKTLNEQLVFIQTLLDSLPNMVALRDRDHRLTLSNRAYRELF-VGDGEEGDH 600

Query: 363  AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
             G ++      +      ++              S          +  L + ++      
Sbjct: 601  WGYMT------EDERQQMLREERAVWETGDIFEGSGYTQR---EGDVPLHVVYVKLPYRA 651

Query: 423  QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII----NREGIILSTN 478
                      +  +    +  + K+     +L  I ++    +         +G  L  +
Sbjct: 652  ADGAIQGVLTVLTDVSALKAAENKVREVEGRLRDITDSMPGLVYQYLWQGAGKGQFLYLS 711

Query: 479  RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR-QTLEKITLGSTKEE- 536
            +  S + G   ++++       +       +  ++ ++       + L+   L  + +  
Sbjct: 712  QGASDILGMTHQELMAAESGGVILGLNDEALATFIDKVAKHAQTLEPLDMEVLVPSVQGE 771

Query: 537  KLLSLRIIIKKLPFSSCYS-LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
            + + +R                + DI+  KQ++++L  A+  AE+    +S FLA +SHE
Sbjct: 772  RYIQIRGNFVAQQGHDRLLNGVVQDITAIKQQEHELREARAAAEQAMQARSLFLATMSHE 831

Query: 596  IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
            +RTP++ + G  E+++        N         ++ S N +L +VND+LD SKIE+G++
Sbjct: 832  LRTPISGMHGMLELLRMSEL----NDDQRYLLRNVESSANHLLYLVNDILDFSKIEAGQL 887

Query: 656  NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSN 714
            +L+ +   L   V + I      A  K + +   + + +P +   D   V Q+  N+L+N
Sbjct: 888  HLNRQSCRLQPVVCDVIRGHAALAYSKGLKVTLQWEDQLPDLADIDPVRVGQVVSNLLNN 947

Query: 715  AIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
            A+ FT  G  I I  +     ++++ V DTG+G+   +  K   PF Q+ +    R  GT
Sbjct: 948  AVKFTEQGA-ISIQVSCHDQ-QLVIAVTDTGIGIAEEKQAKLFTPFEQVESDINRRFGGT 1005

Query: 775  GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
            GLGL +   +V    G   + S   +G       PL + 
Sbjct: 1006 GLGLAICDQLVKKMGGTLTVKSQLGEGACFRFSIPLLNV 1044



 Score = 39.2 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 8/126 (6%), Positives = 33/126 (26%), Gaps = 6/126 (4%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D    L   +    +       +  G     +++            + +  + + G    
Sbjct: 575 DRDHRLTLSNRAYRELFVGDGEE--GDHWGYMTEDERQQMLREERAVWETGDIFEGSG-- 630

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
           +     ++ + +    LP  + +    G     ++             + ++ +   + +
Sbjct: 631 YTQREGDVPLHVVYVKLPYRAADGAIQGV--LTVLTDVSALKAAENKVREVEGRLRDITD 688

Query: 210 IKKGHS 215
              G  
Sbjct: 689 SMPGLV 694


>gi|217424292|ref|ZP_03455791.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei 576]
 gi|217392757|gb|EEC32780.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei 576]
          Length = 818

 Score =  335 bits (859), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 104/519 (20%), Positives = 180/519 (34%), Gaps = 27/519 (5%)

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEI 362
           S R + +L              +        V   HG L Y NPS   L        +  
Sbjct: 158 SRRANDALRRREAGARRYYETLLQSLTQGVVVSDRHGMLTYMNPSAAALIGC-DATAVRG 216

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
                                +          +       +  +    + +        +
Sbjct: 217 LPFRDVYRAYDGRGARVRASALEHVLRSGRSASVEGH--WLAPHDGQRVPIAEAASPLVD 274

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
              +      I  +    R      ++    L  ++EA+ D I  +     I S N A  
Sbjct: 275 SAGDMTGAVLIVRDISIERERSAASQM----LRRLVEASPDAIVGVGSNRRITSWNPAAR 330

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
           ++FGY           + +           L E +            L   ++   +   
Sbjct: 331 RMFGYDEHAARGCDVAMLIAPRWLRNHP--LPESVPDMREPIENVDVLCVRQDGGRMRAT 388

Query: 543 IIIKKLPFSSCYSL----TMHDISEWKQEKNK-------LSHAKKIAEKESSHKSDFLAR 591
           +    +       +    T+ D  E ++ + +          A++ A+  +  K + LA 
Sbjct: 389 MSASPVFDERDACIALSLTLRDTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLAT 448

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           VSHE+RTPL  I G+ EV++N   G L      +  + IDRS   +  +V D+LD S + 
Sbjct: 449 VSHELRTPLNVIYGWIEVLRNPVDGAL----QQQAIDAIDRSARSLSRMVGDILDASSLA 504

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
           +GK+ L   PV L   V++    +   A    I +    A     +  D   ++Q+  N+
Sbjct: 505 TGKLRLDAMPVDLVRIVNDVTGALGAAAQADGIALSVECALATCIVSGDGERLRQMLSNL 564

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           LSNA  FTP GG++ +S       +  L V DTG G++   L    + F +   +     
Sbjct: 565 LSNAFKFTPRGGRVTVSLERHD-AQAKLTVADTGQGISPEFLPHVFEAFRRAEGAPASPR 623

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFP 809
            G GLGL + + + + + GK    S    +GT   I  P
Sbjct: 624 RGLGLGLSIVRHIAELHGGKVEAASAGKNRGTTFAITLP 662



 Score = 65.4 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/225 (12%), Positives = 54/225 (24%), Gaps = 5/225 (2%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK---RQNTWYGK 146
           D HG L  ++      IG  A  + G+   DV               L+   R       
Sbjct: 191 DRHGMLTYMNPSAAALIGCDATAVRGLPFRDVYRAYDGRGARVRASALEHVLRSGRSASV 250

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
              W        VPI  AA P+     + +G     IV    ++ +  A  + L +    
Sbjct: 251 EGHWLAPHDGQRVPIAEAASPLVDSAGDMTGA--VLIVRDISIERERSAASQMLRRLVEA 308

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
             +   G  S  +      + +    +     +   +    A +          +    E
Sbjct: 309 SPDAIVGVGSNRRITSWNPAARRMFGYDEHAARGCDVAMLIAPRWLRNHPLPESVPDMRE 368

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
                       +  +         + +                 
Sbjct: 369 PIENVDVLCVRQDGGRMRATMSASPVFDERDACIALSLTLRDTGE 413


>gi|156974489|ref|YP_001445396.1| hypothetical protein VIBHAR_02206 [Vibrio harveyi ATCC BAA-1116]
 gi|156526083|gb|ABU71169.1| hypothetical protein VIBHAR_02206 [Vibrio harveyi ATCC BAA-1116]
          Length = 827

 Score =  335 bits (859), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 90/371 (24%), Positives = 162/371 (43%), Gaps = 17/371 (4%)

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT-- 505
           E E   L ++++A  D I I +  G +   N+A   + GY ++ I       FL+     
Sbjct: 321 EKESELLATVVKAARDAIVITDHHGKVEWVNKAFESMTGYQLDGIKGLAPGAFLQGADTS 380

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDI 561
           P  +      +   +  +T     L  T+ ++   + I I  L         +     DI
Sbjct: 381 PDTIADIGKAVRQGEQVRT---EILNYTRNKQPYWIDIDIIPLRNEQGVVERFIAIERDI 437

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           +E K+ ++ L      A + +  KS FLA +SHEIRTPL  ++G  +++ +     + + 
Sbjct: 438 TEVKRLESDLETEALKARRANEAKSAFLATMSHEIRTPLNGLLGMLQILNDD----IRDL 493

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
              +       SG  +L I+ND+LD++K+ES  + L   P  + + ++      Q   +E
Sbjct: 494 EQRKVLRLALNSGEHLLSILNDILDLAKVESDALALDIHPFKMADIITPVEVTYQGLCSE 553

Query: 682 KRILIRTS-FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
           K I+       ++      D   ++Q+ LN++ NA+ FT +G  I +      +  V   
Sbjct: 554 KGIVFNVDNHCSDDCYYCGDSVRIRQVLLNLVGNALKFTKTG-HINVCIKALESPFVEFC 612

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V D+G+G+    ++     F Q   S   +  GTGLGL + + +V    G+  + S   K
Sbjct: 613 VEDSGIGIPQDRMDSIFNEFEQAEVSTTRQYGGTGLGLAICQKLVTLMNGQISVESGLGK 672

Query: 801 GTLIE--IIFP 809
           G+     I  P
Sbjct: 673 GSQFRFVISLP 683



 Score = 48.9 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/139 (11%), Positives = 40/139 (28%), Gaps = 6/139 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTWYGK 146
            D HG ++ +++      G     + G+            P+    IG  +++      +
Sbjct: 341 TDHHGKVEWVNKAFESMTGYQLDGIKGLAPGAFLQGADTSPDTIADIGKAVRQGEQVRTE 400

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
              +       ++ ID+  +P+ +        R   I           +  +    K   
Sbjct: 401 ILNYTRNKQPYWIDIDI--IPLRNEQGVVE--RFIAIERDITEVKRLESDLETEALKARR 456

Query: 207 LHEIKKGHSSVEKEKYDIF 225
            +E K    +    +    
Sbjct: 457 ANEAKSAFLATMSHEIRTP 475


>gi|121604608|ref|YP_981937.1| signal transduction histidine kinase with CheB and CheR activity
            [Polaromonas naphthalenivorans CJ2]
 gi|120593577|gb|ABM37016.1| signal transduction histidine kinase with CheB and CheR activity
            [Polaromonas naphthalenivorans CJ2]
          Length = 1408

 Score =  335 bits (859), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 126/639 (19%), Positives = 222/639 (34%), Gaps = 25/639 (3%)

Query: 186  VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS-LT 244
            +     D +AL +   + F            +  E  +           + + +V + L 
Sbjct: 646  IATQRGDSQALVEMTVRFFGEEGPEAALTLVMFDEVPEKPGDLQLKGIDQAQQQVIAQLE 705

Query: 245  EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
                   + L+       TS E      E+   IN    +  +   T +   +   E L+
Sbjct: 706  AEIRQLKEDLQQTIEQAETSTEELKASNEELQAINEELRSATEELETSKEELQSINEELT 765

Query: 305  HRNHPSLSAYFDEGENLTPETVDKCP----IPFFVYSHGNLFYANPSFLLLTKYKSVDDI 360
              N   L    DE   +  +  +          F+     +    P    L      D  
Sbjct: 766  TVNFE-LKIKVDETSKINNDLQNFITSTDIATIFIDRGMRIKRYTPQSASLFNLIESDLN 824

Query: 361  EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
                 ++  LD   L ++       L + +R           +  +          P+  
Sbjct: 825  RSLLDITHKLDYSALVNDVTEVFNTLNKVERQ----------VSSSDGRHYLARIRPYRT 874

Query: 421  ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNR 479
             +   E         +    R  +  +     +L    E T D  I  I+ EG+I + N 
Sbjct: 875  TDDRIE--GAVLTFVDVTALRQAEENVRAGEERLRIAAETTKDYAILTIDEEGLITTWNH 932

Query: 480  AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
               ++FGY  ++ + + F +       +       E+                 K+    
Sbjct: 933  GAERIFGYSEKEAVGQLFAIIFTPEDRAAG-AADEELRLAREEGRSTDERWHLRKDGSTF 991

Query: 540  SLRIIIKKLPF-SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
                ++ +L      Y+    DI+E K  +        + ++ +  K  FLA +SHE++ 
Sbjct: 992  FCSGVVTRLEGKMGGYAKIARDITENKTLQVSRDELLAMEKRANELKDQFLAVMSHELKH 1051

Query: 599  PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
            PL  I   +E++ +Q       P  +     I  +      I++DLLD+S+  +GK+ L 
Sbjct: 1052 PLNLIQVNTELLLSQPEVRAL-PEVVRAGETIRHAVVSQTKIIDDLLDLSRARTGKLTLR 1110

Query: 659  FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718
              PV+LDE      S  +  A++K + +    ++     L D    +QI  N+++NAI F
Sbjct: 1111 LAPVNLDELAEMIASAAREAASKKGLTLVYECSDKEVLALCDRVRTEQIFWNLINNAIKF 1170

Query: 719  TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE-GTGLG 777
            TP GG I +       E     V DTG G+T   L +    F Q PN +      G G+G
Sbjct: 1171 TPEGGTITVQLE-RDAEFAKFSVTDTGQGITAEFLPQIFGMFVQAPNQKVPSTNMGLGVG 1229

Query: 778  LPLAKAMVDANMGKFYIFST-PAKGTLIEIIFPLYDTSH 815
            L L + +  A  GK    S    KG    +  PL  T+ 
Sbjct: 1230 LTLVRDLTVAQGGKVLADSAGLGKGATFSVWLPLAQTTQ 1268



 Score = 48.1 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/245 (11%), Positives = 55/245 (22%), Gaps = 27/245 (11%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY--GK 146
            ID  G +   +    +  G    + +G     +             +L   +       +
Sbjct: 921  IDEEGLITTWNHGAERIFGYSEKEAVGQLFAIIFTPEDRAAGAADEELRLAREEGRSTDE 980

Query: 147  TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                  +G+  +    +  L       +  G+    I      +   +     L      
Sbjct: 981  RWHLRKDGSTFFCSGVVTRL-----EGKMGGYAK--IARDITENKTLQVSRDELLAMEKR 1033

Query: 207  LHEIKKGHSSVEKEKYDIF--------SQQSPPPHLRMKNKVSSLTEYYAH--------- 249
             +E+K    +V   +                  P +R   +V    E   H         
Sbjct: 1034 ANELKDQFLAVMSHELKHPLNLIQVNTELLLSQPEVRALPEVVRAGETIRHAVVSQTKII 1093

Query: 250  -KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
                 L   +   LT   + +   E    I           G          E L+  + 
Sbjct: 1094 DDLLDLSRARTGKLTLRLAPVNLDELAEMIASAAREAASKKGLTLVYECSDKEVLALCDR 1153

Query: 309  PSLSA 313
                 
Sbjct: 1154 VRTEQ 1158


>gi|110636005|ref|YP_676213.1| multi-sensor hybrid histidine kinase [Mesorhizobium sp. BNC1]
 gi|110286989|gb|ABG65048.1| multi-sensor hybrid histidine kinase [Chelativorans sp. BNC1]
          Length = 744

 Score =  335 bits (859), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 110/387 (28%), Positives = 175/387 (45%), Gaps = 14/387 (3%)

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
            E    +      +M+    +   +LE   D +   + EG IL  NR   +L     +D+
Sbjct: 89  AEQHIEELADRVSQMQEAEQRFYGLLETLGDLVINRDGEGRILYANRIFGELMECEPQDL 148

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
             K         TP         I   + R +   + + +    +  S   I ++   SS
Sbjct: 149 FGKTLHQLGVDITPPS-----AGIFPEEERLSSTDVAIHTRNGLRWFSWTEISRREGESS 203

Query: 553 CY--SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
                    DI+  K+ +  L +A++ AE+ S  KS FLA VSHEIRTP+  IIG + ++
Sbjct: 204 SVSHWAIARDITARKRAETALVNARERAEQASIAKSRFLATVSHEIRTPMNGIIGMATLL 263

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
            + R           Y   I  S + +L ++ DLLD SKIE+G++ L  + ++  E +  
Sbjct: 264 SDTRLSS----EQRTYVAAISTSASALLALIEDLLDYSKIEAGRLELEPQRMAARELIES 319

Query: 671 AISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI-IIS 728
            I L+ + A  K+I +    A  +P  ILAD   ++QI LN+L NAI FT  GG +  ++
Sbjct: 320 VIELMAVRAFTKKIGLGCHIAPTVPDTILADPGRLRQILLNLLGNAIKFTDEGGVLMTVT 379

Query: 729 TTHTSNE-EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
           TT      ++  RV DTG G+    L +  + F Q   S   +  G GLGL + + ++DA
Sbjct: 380 TTIHDGAPKLAFRVDDTGPGIEKDSLSRIFQEFEQADTSSTRKHGGAGLGLAITRRLIDA 439

Query: 788 NMGKFYIFSTPAKGTLIEIIFPLYDTS 814
             G   + S P +G    +  PL    
Sbjct: 440 MEGTVTVDSAPGEGATFTVYIPLVGAE 466



 Score = 55.4 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 40/420 (9%), Positives = 97/420 (23%), Gaps = 30/420 (7%)

Query: 38  KSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTV-RFTWNIDAHGYLK 96
            S+K+   H    +    +Q+ E +++      E    F  +  T+     N D  G + 
Sbjct: 74  PSEKKPEEH--PHEQTPAEQHIEELADRVSQMQEAEQRFYGLLETLGDLVINRDGEGRIL 131

Query: 97  EISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTN 156
             +    + +      + G  L      L +D       +   +                
Sbjct: 132 YANRIFGELMECEPQDLFGKTL----HQLGVDITPPSAGIFPEEERLSSTDVAIHTRNGL 187

Query: 157 LYV-PIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHS 215
            +    +++      R  E S    + I                  ++       K    
Sbjct: 188 RWFSWTEIS-----RREGESSSVSHWAIARDITARKRAETALVNARERAEQASIAKSRFL 242

Query: 216 SVEKEKYD-----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270
           +    +       I    +     R+ ++  +     +     L      LL   +    
Sbjct: 243 ATVSHEIRTPMNGIIGMATLLSDTRLSSEQRTYVAAISTSASALLALIEDLLDYSKIEAG 302

Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE-TVDKC 329
             E        +   +     +   +      L     P++            +  ++  
Sbjct: 303 RLELEPQRMAARELIESVIELMAVRAFTKKIGLGCHIAPTVPDTILADPGRLRQILLNLL 362

Query: 330 PIPFFVYSHGNLFYAN-----PSFLLL-TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
                    G +              L  +            LS +    + +D ++ + 
Sbjct: 363 GNAIKFTDEGGVLMTVTTTIHDGAPKLAFRVDDTGPGIEKDSLSRIFQEFEQADTSSTRK 422

Query: 384 -----VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
                + L  + R   A    +       E +    +IP   A              +  
Sbjct: 423 HGGAGLGLAITRRLIDAMEGTVTVDSAPGEGATFTVYIPLVGAEGSAAETSLALKGFDVA 482


>gi|83311055|ref|YP_421319.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82945896|dbj|BAE50760.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 514

 Score =  335 bits (858), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 87/376 (23%), Positives = 154/376 (40%), Gaps = 18/376 (4%)

Query: 455 CSILEATSD---GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL------EQNT 505
             ++EA  +   G  + +R+  ++  N    ++  +P   I                   
Sbjct: 13  RHLIEAVEEFGQGFTVFDRDLNLILCNNRFLEMLDFPPSLIHPGTVFADFMRYNAMRGEY 72

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
                  L        R            +  ++ +R           +  T  DI++ K
Sbjct: 73  GPGDVEALVAERVERARNFAPHCFERERPDGTVVEVRGTPLP---GGGFVTTYTDITDRK 129

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + +  L HAK  AE+ +  K++FLA +SHEIRTP+  ++G   ++      P       +
Sbjct: 130 RAERMLIHAKDKAEETARLKANFLATMSHEIRTPMNGVLGMLHLLTGSPLTP----DQRD 185

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           +      S   +L I+ND+LD SK+E+G+M L      L   + E ++L++  A +K + 
Sbjct: 186 HLETAQSSARALLAIINDILDFSKLEAGQMKLEATKFDLHRLLEEMVALLKGAARDKGLT 245

Query: 686 IRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVILRVRD 743
           +    A+ +PR    D   ++Q+  N++ NA+ FT  G   + +    + +  +   V D
Sbjct: 246 LSLRIADTVPRYQAGDPTRLRQVLTNLMGNAVKFTEKGDVAVSVEPEESDSSRLRFEVAD 305

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TG+G+           F Q  +S   R  GTGLGL + K +V+   G+    S P +GT 
Sbjct: 306 TGIGIEPAAAPALFSEFVQADSSITRRFGGTGLGLSICKRLVEMMGGEIGFDSIPGEGTT 365

Query: 804 IEIIFPLYDTSHPHDC 819
                PL       D 
Sbjct: 366 FHFTLPLSAALPDQDS 381


>gi|240142356|ref|YP_002966866.1| putative multi-sensor hybrid Histidine kinase [Methylobacterium
           extorquens AM1]
 gi|240012300|gb|ACS43525.1| putative multi-sensor hybrid Histidine kinase [Methylobacterium
           extorquens AM1]
          Length = 1072

 Score =  335 bits (858), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 104/541 (19%), Positives = 200/541 (36%), Gaps = 26/541 (4%)

Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-----NLFYANP 346
             +            +   L    +E + L     D  P    V          +   N 
Sbjct: 291 AASVLAVLPVVAMLADKARLEKSLNEAKALFLGVFDSSPEMLIVQYQDAEGQIRVETCNE 350

Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
           +            I         L   K S N A     + R+  +      R   ++  
Sbjct: 351 NAAQAFGRSQEACIGR---TVESLIRGKASRNVAEDIEHVMRTGESVR----RTREVRHR 403

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
              ++        +               +       ++ + +   +L  + E T+D I 
Sbjct: 404 ERGTIFEDISVPLRDPSTGRVTRVLSSVRDITARLQAEKAVRVSEARLRLLAENTTDMIV 463

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
             +        + A  ++ G+   +++         Q+    +   +  ++         
Sbjct: 464 EFDLGLRCTYVSPASREIIGFAPAELVGTDPYEHCLQDDAPEIQRAVAPLI-DGTFSHAA 522

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKES 582
                  ++ + + +      +   S        +M D++E KQ +  L  A+  AE+ S
Sbjct: 523 STHRALHRDGRTVWIETRWSLVRSESGRPAGVVASMRDVTERKQAEIALVRAQAEAEQAS 582

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
           + KSDFLA +SHEIRTPL  I G++ ++  +   P    R   +   I  +  ++  +V+
Sbjct: 583 AAKSDFLATMSHEIRTPLNGIAGYAGLLMTEDGLP---ARSRRHVERIQTASQVLKTVVD 639

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADL 701
           D+LD SKIE+G++ L      L   V + +++V+         +    A ++      D 
Sbjct: 640 DVLDFSKIEAGRVELVPTTFGLARLVDDVVAIVRGGVPADGPHVEGEIAPSLDGAYVGDE 699

Query: 702 RSVKQIALNILSNAIHFTPSGGQ--IIISTTHTSN-EEVILRVRDTGVGMTNYELEKAMK 758
             ++QI LN+L+NA+ FTP+G     I+     +    +   VRDTG+G++  + +   +
Sbjct: 700 NRLRQILLNLLNNAVKFTPAGSVDLRIVDLGLEAGSRRLRFSVRDTGIGISPEQQKLLFR 759

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE--IIFPLYDTSHP 816
            F QI  S   R  GTGLGL +++ +V    G   + S+   G+     I  P +  + P
Sbjct: 760 KFSQIDASNVRRYGGTGLGLAISQRLVGLMGGAIEVSSSLGTGSEFSFEISLPEHADAPP 819

Query: 817 H 817
            
Sbjct: 820 Q 820



 Score = 46.2 bits (108), Expect = 0.025,   Method: Composition-based stats.
 Identities = 26/249 (10%), Positives = 58/249 (23%), Gaps = 14/249 (5%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH-IDPNNHIGDLLKRQNTWYGKT- 147
           D       +S    + IG    +++G    +        +    +  L+    +    T 
Sbjct: 466 DLGLRCTYVSPASREIIGFAPAELVGTDPYEHCLQDDAPEIQRAVAPLIDGTFSHAASTH 525

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                +G    V I+     + S +   +G      +              R   +    
Sbjct: 526 RALHRDGRT--VWIETRWSLVRSESGRPAGV--VASMRDVTERKQAEIALVRAQAEAEQA 581

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
              K    +    +           +  +      L        + ++T    L T  + 
Sbjct: 582 SAAKSDFLATMSHEIRT-PLNGIAGYAGLLMTEDGLPARSRRHVERIQTASQVLKTVVDD 640

Query: 268 SL-------PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
            L          E   T              ++        ++     PSL   +   EN
Sbjct: 641 VLDFSKIEAGRVELVPTTFGLARLVDDVVAIVRGGVPADGPHVEGEIAPSLDGAYVGDEN 700

Query: 321 LTPETVDKC 329
              + +   
Sbjct: 701 RLRQILLNL 709


>gi|242280556|ref|YP_002992685.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens
           DSM 2638]
 gi|242123450|gb|ACS81146.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens
           DSM 2638]
          Length = 1038

 Score =  335 bits (858), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 102/575 (17%), Positives = 206/575 (35%), Gaps = 56/575 (9%)

Query: 282 QYTKKQYFGTLQNNSKESFEYLSHRNHPS--LSAYFDEGENLTPETVDKCPIPFF-VYSH 338
              + Q      +      + +           A     E    +  D  P+  F     
Sbjct: 327 YEARMQEASRRIDEVNRQKDKVEQEIRNRHLADALRRRAEIKFRDIFDNAPMGIFQATLD 386

Query: 339 GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398
           G+   AN +   L  Y++ D++     +S++ D   ++  +  + V + R      +   
Sbjct: 387 GSYLTANKALAELYGYENSDEL--ISEVSSVGDQVYMNSQDWQRCVQMLRFAGQVASYEV 444

Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458
                + +         +     ++   +    G   +    +  +++ +    +  S+ 
Sbjct: 445 ECQ--RKDGGTVWTSRDMRLV-ESEPGMSAYVEGFVIDVTARKKAEKEQQKSEWRFRSLF 501

Query: 459 EATSDGIA---------IINREG-------------------------IILSTNRAVSKL 484
           E +   +          I +  G                          I+  N    + 
Sbjct: 502 ENSPVALWELDLSSVKEIFDSYGPDMLPVIREELLSDHKSVSRCVENIRIIDANNRTIEF 561

Query: 485 FGYPV-EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           FG    E ++   F+ ++ Q++  +      ++L    R   E   L     E+   L +
Sbjct: 562 FGTSSLEQLIDVGFSPYVTQHSWRIYRTVFLDLLKGAERHRSEFSFLRLDGREQFFILNL 621

Query: 544 IIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
            I            + + DISE K+ + +L  +++ A++ +  K  FLA ++HE RTP+ 
Sbjct: 622 TIVPGCEDSWERVLVAVEDISELKRIEKELRSSREEAQEANEAKGRFLANMTHEFRTPMN 681

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           A+ G  ++++             E    I  S + +L IVND+LD SK++S  M L+ E 
Sbjct: 682 AVKGMVQLLQRSELTS----EQQENLRLIKSSVDSLLVIVNDILDYSKLDSVHMELNEEN 737

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           +     + E   +V + A  K + +     N    +  D   ++Q+ +N+L N + FT  
Sbjct: 738 IDFPAFLREMGDVVDIGAMNKPLQVILEAENVPDCVRVDSLRLRQVLVNLLGNGVKFTDK 797

Query: 722 GGQIIISTTHT----SNEEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           G  + +            ++     V DTG+G+     E   + F Q   S   +  GTG
Sbjct: 798 G-NVTLRCRPEGPEGEGGKLRLLFEVSDTGIGLPKDGAESLFESFVQADPSITRKYGGTG 856

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           LGL +   +V    G+    +    G L   + P+
Sbjct: 857 LGLAICYKLVKHLGGELSARNNEQGGALFSFVLPV 891


>gi|124267680|ref|YP_001021684.1| signal transduction histidine kinase-like protein [Methylibium
            petroleiphilum PM1]
 gi|124260455|gb|ABM95449.1| signal transduction histidine kinase-like protein [Methylibium
            petroleiphilum PM1]
          Length = 1317

 Score =  335 bits (858), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 122/761 (16%), Positives = 278/761 (36%), Gaps = 35/761 (4%)

Query: 70   SENTFVFDPIPRTVRFTW-NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCD-VSDILHI 127
            +E       + R++   W  IDA G   E S+E   ++     ++ G    + V + L  
Sbjct: 420  AEQQARLGAVLRSLPDLWFVIDAEGRHVECSDERHPSLFRPFEELRGKHFAEAVPEPLAS 479

Query: 128  DPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187
                 I + L+       +  L  ++G       +    P+        G R   +    
Sbjct: 480  LAMRSIAEALRSGEVQRIEYELPTLDGRVRNF--EARISPMG-------GDRVLYLTRDL 530

Query: 188  RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTE 245
                      + + +       +    +   +    +    +    L     ++V     
Sbjct: 531  TELRHLERNVQLMQRALEAEAALPMVVADATQPDLPLIYANTAFERLSGLPLDQVIGRNC 590

Query: 246  YYAHKDDVLKTEKYPLLTS--EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303
             +    D  +     L  +   E +          +   +  + +   +++       Y+
Sbjct: 591  RFLQAGDRDQPGLTRLREALAAERACSVTLRNQRADGTSFINELHVAPVRDTLGRVTHYV 650

Query: 304  SHRNHPSLSAYFDEGENLTPETVDKCPIPF-----FVYSHGNLFYANPSFLLLTKYKSVD 358
              ++  +  +  +    L+                 +     +  ANPS   L   ++  
Sbjct: 651  GVQHDVTERSRAERQLALSETLYRSVAASITDGLLVIGPDRRIVTANPSACTLLGARATT 710

Query: 359  DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
                  G        +           +     +  +A  R+H ++    +   +     
Sbjct: 711  LTGQRLGRLGYKLLEEDGRPVEHDRHPVREVLLSGRSALDRVHRLRRPDGSERLLRLNVQ 770

Query: 419  EKANQFPENMPQ-NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
                   ++         +    R  + ++     +    LE   DGI   + +  ++  
Sbjct: 771  PLRAHPDDSRLSCVVTFRDITAQRGAEAELAQAEARWKFALEGAGDGIWDYDEDTQLVFY 830

Query: 478  NRAVSKLFGYPVEDI--LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
            +     + GY  ++I    + ++  +  +    +   +    + ++ +          K+
Sbjct: 831  SPRWKAMLGYRDDEIGTSTREWSRRIHPDDRPGVIDAIRRYRAGEITE-YRTEHRLRHKD 889

Query: 536  EKLLSLR-----IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
               + +      +  +          T  D++  K  +  +   K  AE  S  KS FL+
Sbjct: 890  GHWIWVYERGKIVERRADGSPRRIVGTHTDVTRQKMAEQAMRD-KAAAELASQAKSAFLS 948

Query: 591  RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650
            R+SHE+RTPL A+IGF+++++       G  R  ++ ++I ++G  +L +VND+LD+ ++
Sbjct: 949  RMSHEMRTPLNAVIGFAQLLRKD--DAPGGARVAQFGDHILQAGEHLLALVNDVLDLQQV 1006

Query: 651  ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710
            E G++++  E + L  AV  A+ L++  A ++R+ +      ++  + AD + ++Q+ LN
Sbjct: 1007 EEGRLSIRLESLPLRAAVDAALELIRPQAAQRRVTVCNLIEPDL-SVQADPQRLRQVLLN 1065

Query: 711  ILSNAIHFTPSGGQIIISTTHTSNE-EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
            +LSN + +   GG++  S           L + D G G+   +L +  +PF ++   +  
Sbjct: 1066 LLSNGVKYNREGGELHCSAVLDGTTPCCTLLIEDQGFGLEADDLARLFQPFERL-GRETS 1124

Query: 770  RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
              EGTGLGL +++ + +   G+  + S P  GTL  +  PL
Sbjct: 1125 AIEGTGLGLVISRRLAEEMNGRLSLSSRPGHGTLARLELPL 1165



 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 47/495 (9%), Positives = 118/495 (23%), Gaps = 35/495 (7%)

Query: 90  DAHGYLKEISEEL----PKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK-RQNTWY 144
           D  G +   +        + +  +      +    +    + D      +    R     
Sbjct: 316 DPRGRIVLSNTAWRTGMQRFLPEWPSHWPDLVHALLRAGAYPDATGREAEFAAWRLGLTT 375

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            +     +     +V +    L     +                              + 
Sbjct: 376 AEGRQHELRFGQQHVLVTDQLLA----DGSVIHLSI-----DITRRRRTELELAEQQARL 426

Query: 205 SHLHEIKKGHSSVEKEKYDIFS--QQSPPPHLRMKNKVSS--LTEYYAHKDDVLKTEKYP 260
             +         V   +        +  P   R   ++      E        L      
Sbjct: 427 GAVLRSLPDLWFVIDAEGRHVECSDERHPSLFRPFEELRGKHFAEAVPEPLASLAMRSIA 486

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
                      + +  T++      +     +  +                         
Sbjct: 487 EALRSGEVQRIEYELPTLDGRVRNFEARISPMGGDRVLYLTRDLTELRHLERNVQLMQRA 546

Query: 321 LTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
           L  E      +         L YAN +F  L+       ++   G +         D   
Sbjct: 547 LEAEAALPMVVADATQPDLPLIYANTAFERLSGLP----LDQVIGRNCRFLQAGDRDQPG 602

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
           +  +    +     + + R          S           +         G++ +  + 
Sbjct: 603 LTRLREALAAERACSVTLRNQR---ADGTSFINELHVAPVRDTLGRVTHYVGVQHDVTER 659

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
              +R++ +      S+  + +DG+ +I  +  I++ N +   L G     +  +     
Sbjct: 660 SRAERQLALSETLYRSVAASITDGLLVIGPDRRIVTANPSACTLLGARATTLTGQRLGRL 719

Query: 501 ---LEQNTPSVMNHYLTEILS--LDLRQTLEKITLGSTKEEKLLSLRIIIKKL---PFSS 552
              L +     + H    +    L  R  L+++      +     LR+ ++ L   P  S
Sbjct: 720 GYKLLEEDGRPVEHDRHPVREVLLSGRSALDRVHRLRRPDGSERLLRLNVQPLRAHPDDS 779

Query: 553 CY--SLTMHDISEWK 565
                +T  DI+  +
Sbjct: 780 RLSCVVTFRDITAQR 794



 Score =  118 bits (296), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 61/524 (11%), Positives = 147/524 (28%), Gaps = 47/524 (8%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL--KRQNTW 143
            W  D HG +  +S+ +    G+     +G            D +    + L   R    
Sbjct: 184 LWETDEHGTISWVSDSVEAHTGHPPSHEVGQ-FGQGMHRARDDEHRASWEALVAARAQQR 242

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +  +   +  +  + I  +  P++    +F G+RG         + + R   +R    
Sbjct: 243 PFRNAVADRDAAHGTITISTSGDPVFDATGQFKGYRG--AARNITEELNRRTQEQRTQAL 300

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQS----------PPPHLRMKNKVSSLTEYYAHKDDV 253
                E       V   +  I    +          P       + V +L    A+ D  
Sbjct: 301 LQAAIEGVAAGVMVSDPRGRIVLSNTAWRTGMQRFLPEWPSHWPDLVHALLRAGAYPD-- 358

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
             T +     +    L   E                  L  +       +          
Sbjct: 359 -ATGREAEFAAWRLGLTTAEGRQHELRFGQQHVLVTDQLLADGSVIHLSIDITRRRRTEL 417

Query: 314 YFDEGENLTPETVDKCPIP-FFVYSHGNLFYANP-SFLLLTKYKSVDDIEIAGGLSTLLD 371
              E +      +   P   F + + G     +      L   +  +++        +  
Sbjct: 418 ELAEQQARLGAVLRSLPDLWFVIDAEGRHVECSDERHPSLF--RPFEELRGKHFAEAV-- 473

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
            P+   + A++ +               L         +L      FE            
Sbjct: 474 -PEPLASLAMRSIAEALRSGEVQRIEYEL--------PTLDGRVRNFEARISPMGGDRVL 524

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEA-TSDGIAIIN---REGIILSTNRAVSKLFGY 487
            +  +  + R     +E  V  +   LEA  +  + + +    +  ++  N A  +L G 
Sbjct: 525 YLTRDLTELR----HLERNVQLMQRALEAEAALPMVVADATQPDLPLIYANTAFERLSGL 580

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
           P++ ++ +        +        L E L+ +   ++         +       + +  
Sbjct: 581 PLDQVIGRNCRFLQAGDRDQPGLTRLREALAAERACSV--TLRNQRADGTSFINELHVAP 638

Query: 548 LPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
           +  +      Y    HD++E  + + +L+ ++ +    ++  +D
Sbjct: 639 VRDTLGRVTHYVGVQHDVTERSRAERQLALSETLYRSVAASITD 682



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/403 (8%), Positives = 90/403 (22%), Gaps = 16/403 (3%)

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY 246
             +    R                K    +      D           R  +    +   
Sbjct: 49  ISLVAADRQWFPASVGLEVRETPRKLAFCAHTILGNDAMEIVDAQRDERFADNPLVVGAP 108

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
                  +  +          ++  +      +     +     T         E  S  
Sbjct: 109 RLRAYAAVPVQVDGQRIGTVCAIDARPGRLPPDALATLRDLATLTSALLQARLQEQRSRL 168

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
               + A    G +   ET +           G + + + S    T +    ++    G 
Sbjct: 169 QESRVRAASRAGSDWLWETDEH----------GTISWVSDSVEAHTGHPPSHEVGQ-FGQ 217

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
                       +    V      R    A A     +     ++ ++       +   +
Sbjct: 218 GMHRARDDEHRASWEALVAARAQQRPFRNAVAD----RDAAHGTITISTSGDPVFDATGQ 273

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
                G      +    + + +     L + +E  + G+ + +  G I+ +N A      
Sbjct: 274 FKGYRGAARNITEELNRRTQEQRTQALLQAAIEGVAAGVMVSDPRGRIVLSNTAWRTGMQ 333

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
             + +       +                       +       G   E +     +++ 
Sbjct: 334 RFLPEWPSHWPDLVHALLRAGAYPDATGREAEFAAWRLGLTTAEGRQHELRFGQQHVLVT 393

Query: 547 -KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
            +L           DI+  ++ + +L+  +           D 
Sbjct: 394 DQLLADGSVIHLSIDITRRRRTELELAEQQARLGAVLRSLPDL 436


>gi|313674944|ref|YP_004052940.1| multi-sensor hybrid histidine kinase [Marivirga tractuosa DSM 4126]
 gi|312941642|gb|ADR20832.1| multi-sensor hybrid histidine kinase [Marivirga tractuosa DSM 4126]
          Length = 1092

 Score =  335 bits (858), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 97/425 (22%), Positives = 188/425 (44%), Gaps = 16/425 (3%)

Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449
           +   I             ++ +           +  +    +GI  +  + +IN   ++ 
Sbjct: 394 NGEAINFEVEFENPL--DKSVVWKEIFLNPIYTESGDITGLSGIAHDITERKINALNIQK 451

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
             ++  +I E+  D       +G I+  + +V +  GY  +++     T +      +  
Sbjct: 452 SELKFRNIFESFQDIYFNCRFDGEIILISPSVKENIGYEQDEVTGNNITNYYLYTKKTKD 511

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSL--RIIIKKLPFSSCYS--LTMHDISEWK 565
                       R+         T++ +L++    + + +   S   +      DI++ K
Sbjct: 512 LLKKLVSR----RKVQNFEATLITRDGRLVNCICNVRLVRDKDSREVTIEGVARDITKLK 567

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           Q   +L HAK +AE     K  FLA +SHEIRTP+  +IG  +++   +     NP  + 
Sbjct: 568 QANRELLHAKNMAENSLKVKEQFLANMSHEIRTPMNGVIGMVDLLSQTQL----NPEQMN 623

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           + + I RS   +L I+ND+LD+SKIE+GKM +      +     + ++L    AN+K I 
Sbjct: 624 FVHTIKRSSETLLTILNDILDLSKIEAGKMKIQPHITEVKSVFDKVLNLFSQQANQKSID 683

Query: 686 IRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV-ILRVRD 743
           +     + IP+ +  D   + QI  N+ SNA+ FT   G++++  +    + +  + V D
Sbjct: 684 LSYKIDSEIPKYLKIDETRIIQIISNLTSNALKFTEKEGKVLLHISKEIKDNLYRIAVED 743

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TG+G++  + ++  K F Q+ NS      GTGLGL ++K +     G+  + S P +G++
Sbjct: 744 TGIGISENDQQQLFKLFTQVDNSSTKAFSGTGLGLAISKQLSSLMGGQIGVSSEPDEGSV 803

Query: 804 IEIIF 808
                
Sbjct: 804 FWFTL 808



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 51/139 (36%), Gaps = 15/139 (10%)

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS----KLFGYPVE---D 491
           + +  + K+  +  +L SI  +++  I  IN++  + S N+       K F +  +   D
Sbjct: 308 ERKFIEEKISTQAGRLQSIFNSSNHIIWSINKDYKLTSFNQNFEYEFLKYFNFKPQVNTD 367

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK-EEKLLSLRIIIKKL-- 548
           +  K  T      + +         L+ +    +          ++ ++   I +  +  
Sbjct: 368 LRGKLITSIFTSGSYNFWGDKFESCLNGEA---INFEVEFENPLDKSVVWKEIFLNPIYT 424

Query: 549 --PFSSCYSLTMHDISEWK 565
                +  S   HDI+E K
Sbjct: 425 ESGDITGLSGIAHDITERK 443



 Score = 46.2 bits (108), Expect = 0.022,   Method: Composition-based stats.
 Identities = 19/128 (14%), Positives = 40/128 (31%), Gaps = 5/128 (3%)

Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
             G IL TN+   K  GY  +D+        +         +   +++    ++ L    
Sbjct: 53  ANGQILKTNKNWRKALGYSSQDLKHIFIRDIIFPEDWHKFQNVTDQVVKNKSQELL--EV 110

Query: 530 LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK--NKLSHAKKIAEKESSHKSD 587
             S+K    + +  I+     +        DI+     +    L +       +S+    
Sbjct: 111 RLSSKNNDKIHVTGILLISMSNKNIVANFQDITHQIHAQKAQNLFYEITNLTLKSTDLDS 170

Query: 588 FLARVSHE 595
               + HE
Sbjct: 171 LFRGI-HE 177


>gi|296156019|ref|ZP_06838858.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. Ch1-1]
 gi|295893525|gb|EFG73304.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. Ch1-1]
          Length = 776

 Score =  335 bits (858), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 109/624 (17%), Positives = 220/624 (35%), Gaps = 25/624 (4%)

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
              +      +    +      +F Q    P L+M+  V+ +     H+D        P+
Sbjct: 43  GYQTAELAGTRQIQDLLSAGGKVFYQTHWAPLLQMQGSVAEVKLSLMHRDG----HMLPM 98

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
           L +       +  +  + +     +  +   +          S   H        E  ++
Sbjct: 99  LLNAVRRRHGEATYLEVAVLIVADRHKYEQ-ELLLARRNAEASVAAHQFAQKELQESRDV 157

Query: 322 TPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
               +    +  + +    G   + +     L  Y         GG            + 
Sbjct: 158 LSLAMRGARMGAWSHEPKSGRF-WWSRELEALAGYAEGRFAHTPGG----FFERIHPGDL 212

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
                 +  +  T     A    +  + +    M        ++    +   G+  +  +
Sbjct: 213 IALNEAVDHAVETGDDYVAEFRFLHASGD-WCWMEGRGRAAYDRHGVPLMIYGLGIDITE 271

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
            +  +  +  +     +I E  SD I I +  G I   N    ++ GY + +IL +P  +
Sbjct: 272 RKEAQTVLLRQ----AAIFEHLSDAIVITDLRGNITDFNVGGERMLGYRMREILGRPVAM 327

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLT 557
           FL       +       L+ +     E   +       +    +                
Sbjct: 328 FLPPEQALGIRREALAALAAEGTWRSELPFVRRDGSRGVCETVVKPLANARGDVYGAVSI 387

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
             DI+E ++ + +L+       K    K +FLA ++HE+R PL  +    E+++ + F  
Sbjct: 388 NRDITERRRAEQQLTRLNLELSKADRRKDEFLATLAHELRNPLAPMRNVLEILRLKEFAD 447

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
                  +  +   R    +  +V+DLL++S+I  GK+ L  + + L  A+  A+   + 
Sbjct: 448 PQLSWSRDVFD---RQLQHMTHLVDDLLEVSRITQGKLELRKQRLELARAMQSAMEAARP 504

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737
                   +  +       ++AD   + Q+ LN+L+NA  +TP GG I +       +E 
Sbjct: 505 TVQASSHHLSVTLPREPLYLIADPTRLSQMILNLLNNAAKYTPPGGSISL-AAEREGDEA 563

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
           ++ VRD+G+G+    L+   + F Q+  +      G G+GL L + + + + G    FS 
Sbjct: 564 VIVVRDSGIGIPGEHLDSVFEMFSQLAPALDRSQGGLGIGLALVRGLAELHGGTVAAFSE 623

Query: 798 -PAKGTLIEIIFPLYDT-SHPHDC 819
            P KG+   I  PL  T S P D 
Sbjct: 624 GPGKGSEFMIRLPLTKTASQPSDS 647



 Score = 81.2 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 41/391 (10%), Positives = 103/391 (26%), Gaps = 32/391 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIG-MRLCD-VSDILHIDPNNHIGDLLKRQNTWYGK 146
            D +G +  ++      +G    ++ G  ++ D +S    +    H   LL+ Q +    
Sbjct: 25  TDTNGRILRVNATFCGWLGYQTAELAGTRQIQDLLSAGGKVFYQTHWAPLLQMQGSVAEV 84

Query: 147 TT-LWPIEG-------------TNLYVPIDLAALPIYSR---NREFSGFRGFGIVHVNRV 189
              L   +G                   +++A L +  R    +E    R      V   
Sbjct: 85  KLSLMHRDGHMLPMLLNAVRRRHGEATYLEVAVLIVADRHKYEQELLLARRNAEASVAAH 144

Query: 190 DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL-----RMKNKVSSLT 244
               + L +  D     +   + G  S E +    +  +           R  +      
Sbjct: 145 QFAQKELQESRDVLSLAMRGARMGAWSHEPKSGRFWWSRELEALAGYAEGRFAHTPGGFF 204

Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
           E     D +   E              +  F   + +    +       +          
Sbjct: 205 ERIHPGDLIALNEAVDHAVETGDDYVAEFRFLHASGDWCWMEGRGRAAYDRHGVPLMIYG 264

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIA 363
                +                +       +    GN+   N     +  Y+  + +   
Sbjct: 265 LGIDITERKEAQTVLLRQAAIFEHLSDAIVITDLRGNITDFNVGGERMLGYRMREILGRP 324

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
                +   P+ +     + +    ++ T     + L  ++ +    +  T      AN 
Sbjct: 325 V---AMFLPPEQALGIRREALAALAAEGT---WRSELPFVRRDGSRGVCETV-VKPLANA 377

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
             +      I  +  + R  ++++    ++L
Sbjct: 378 RGDVYGAVSINRDITERRRAEQQLTRLNLEL 408



 Score = 54.6 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/132 (12%), Positives = 41/132 (31%), Gaps = 4/132 (3%)

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           ++ E  + G+ + +  G IL  N       GY   ++        L      V       
Sbjct: 13  ALFEHAACGLLVTDTNGRILRVNATFCGWLGYQTAELAGTRQIQDLLSAGGKVFYQTHWA 72

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY---SLTMHDISEWKQEKNKLS 572
            L        E       ++  +L + +   +             +  +++  + + +L 
Sbjct: 73  PLLQMQGSVAEVKLSLMHRDGHMLPMLLNAVRRRHGEATYLEVAVLI-VADRHKYEQELL 131

Query: 573 HAKKIAEKESSH 584
            A++ AE   + 
Sbjct: 132 LARRNAEASVAA 143



 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 47/240 (19%), Gaps = 9/240 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147
            D  G + + +    + +G    +++G  +                   L  + TW  + 
Sbjct: 296 TDLRGNITDFNVGGERMLGYRMREILGRPVAMFLPPEQALGIRREALAALAAEGTWRSEL 355

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                +G+      +    P+ +   +  G     I               RL+ + S  
Sbjct: 356 PFVRRDGSRGV--CETVVKPLANARGDVYGA--VSINRDITERRRAEQQLTRLNLELSKA 411

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
              K    +    +          P   +   +                    L      
Sbjct: 412 DRRKDEFLATLAHELR----NPLAPMRNVLEILRLKEFADPQLSWSRDVFDRQLQHMTHL 467

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
                E           +KQ     +                S                D
Sbjct: 468 VDDLLEVSRITQGKLELRKQRLELARAMQSAMEAARPTVQASSHHLSVTLPREPLYLIAD 527


>gi|212635122|ref|YP_002311647.1| PAS domain-containing protein [Shewanella piezotolerans WP3]
 gi|212556606|gb|ACJ29060.1| PAS domain protein [Shewanella piezotolerans WP3]
          Length = 1831

 Score =  335 bits (858), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 97/418 (23%), Positives = 175/418 (41%), Gaps = 22/418 (5%)

Query: 407  RENSLAMTFIPFEKANQFPENMPQNGIEPEDVD------TRINKRKME-IEVMQLCSIL- 458
                  +              +    +  E  +       +     +   E M+   +L 
Sbjct: 820  GSTLFTLRVGTRATRALTRSRIELEQLVKERTEALKAAMQKAEAATLSLAEQMKFQQLLI 879

Query: 459  EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
            +     +   +  G  L  N+A  + F    +D++    +     +      +   +   
Sbjct: 880  DTVPIPLFYKDANGKFLGFNKAYEETFQVESKDLVGLTVSDLTYLSKKDRQLYQAEDTEV 939

Query: 519  LDLRQTLEKITLGSTKEEKL----LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA 574
            +  + T++K       + K+      +                + DI+  K+   +L  A
Sbjct: 940  IANQTTIKKEMPIPFGDNKIHHTLYWVTGFKDSNGNPGGLVGNIIDITTEKENARQLEIA 999

Query: 575  KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
             K A++ +  KSDFLA +SHEIRTP+ AIIG S +I+        N +  +Y   I  S 
Sbjct: 1000 VKTADEATRAKSDFLANMSHEIRTPMNAIIGMSYLIQQTDL----NRKQSDYVTKIQNSA 1055

Query: 635  NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
              +L I+ND+LD SKIE+ K+ L   P +L+++    + ++     +K + +      N+
Sbjct: 1056 ESLLGIINDILDFSKIEASKLELEMTPFNLNDSFDNLVQIIAHKTQQKGLELLIDIEPNL 1115

Query: 695  P-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMT 749
            P  ++ D   + QI +N+ +NA+ FT  G +III        E    +   V+DTG+GMT
Sbjct: 1116 PVDLIGDPLRLGQILINLANNAMKFTDEG-EIIIKARAVEQHEQQVTIEFAVKDTGIGMT 1174

Query: 750  NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
              +L K  K F Q   S   +  GTGLGL ++K + +   GK ++ S+  +G+     
Sbjct: 1175 PEQLNKLFKSFSQADASTTRKYGGTGLGLTISKTLTELMAGKIWVESSYGEGSTFLFT 1232


>gi|325981529|ref|YP_004293931.1| multi-sensor signal transduction histidine kinase [Nitrosomonas sp.
           AL212]
 gi|325531048|gb|ADZ25769.1| multi-sensor signal transduction histidine kinase [Nitrosomonas sp.
           AL212]
          Length = 683

 Score =  335 bits (858), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 119/635 (18%), Positives = 246/635 (38%), Gaps = 34/635 (5%)

Query: 185 HVNRVDNDPRALGKR--LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS 242
              R     R    R  L+ K +   ++ +G ++    + D+  ++       +    S 
Sbjct: 46  REIRDAALIRLSLLRADLEGKITSNAQLVQGLAASISVEPDLSLEKFAQLAQYLFKGRSQ 105

Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302
           L    A  D +++             L  +E    +      +      +          
Sbjct: 106 LRNISAAPDLIIRYMYPVEGNEAAIGLNFREHPQQLESVLRARDSEHLIIAGPVDLVQGG 165

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPF--FVYSHGNLFYANPSFLLLTKYKSVDDI 360
           L       +     E E      +    I       + G L +     + +    ++   
Sbjct: 166 LGFIARIPVFLDNAESEKKAFWGMISAVIDVNKLYQASGLLDFVKEFDISIRGKDALGKA 225

Query: 361 EIAG-GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
                G   L     +              D +    S ++  I        ++T     
Sbjct: 226 GEVFFGTDQLFVQNPV------------LLDISLPYGSWQIAAIPKGG---WSVTGNEGI 270

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTN 478
                        + P  +  +  +++      +L ++   +  GIA+ + E G  +  N
Sbjct: 271 VFRLGLVFTGILILLPVVLIAKFQQKE-RDNEARLKALFAISPIGIALNDYETGKFIEVN 329

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
            A+    GY  E++L   +     ++        L  +       + +K  +   K+   
Sbjct: 330 DALLVPTGYTREELLNLTYWDITPKDYAIQEAQQLESMQVTGSFCSYKKEYI--RKDGSH 387

Query: 539 LSLRIIIKKLPFSSCYSLT---MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
             +++    +   S   L    + DI+E K  +  L  A+  AE+ +  KS+FL+ +SHE
Sbjct: 388 YPVQLYGIVIYDVSGRKLIWSMVEDITERKAAELSLISARYEAERANKAKSEFLSSMSHE 447

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           +RTP+ AI+GFS++++ +      + R++ Y   I  +G  +L +++++LD++KIESG++
Sbjct: 448 LRTPMNAILGFSQLLELEGL----DDRHLTYVKGIKSAGVHLLALIDEVLDLAKIESGRI 503

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715
           +L  E + +   V E I+LV++ A+ + I +  S   +   +  D    KQI LN++ NA
Sbjct: 504 DLQPEWIDICTVVEECINLVKIQADGQDIKLTHSGMAD-KVLYTDRIRFKQIILNLIHNA 562

Query: 716 IHFTPSGGQIIISTTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           I +   GG + I   ++ N   + + V D+G+G+    L +  +PF ++  +     EGT
Sbjct: 563 IKYNRKGGWVHIELKNSDNPGYLKIIVIDSGIGIAANRLTQLFQPFNRLDAAGS-AIEGT 621

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           G+GL L + +++   G+  + S    G+      P
Sbjct: 622 GIGLSLTRRIIEMMGGRIGVESELGVGSTFWFELP 656



 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/137 (10%), Positives = 41/137 (29%), Gaps = 6/137 (4%)

Query: 93  GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTW-YGKTTLWP 151
           G   E+++ L    G    +++ +   D++   +        + ++   ++   K     
Sbjct: 323 GKFIEVNDALLVPTGYTREELLNLTYWDITPKDYAIQEAQQLESMQVTGSFCSYKKEYIR 382

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
            +G++   P+ L  + IY  +        + +V                  +    ++ K
Sbjct: 383 KDGSHY--PVQLYGIVIYDVSGR---KLIWSMVEDITERKAAELSLISARYEAERANKAK 437

Query: 212 KGHSSVEKEKYDIFSQQ 228
               S    +       
Sbjct: 438 SEFLSSMSHELRTPMNA 454


>gi|253570165|ref|ZP_04847574.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
 gi|251840546|gb|EES68628.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
          Length = 931

 Score =  335 bits (858), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 102/519 (19%), Positives = 202/519 (38%), Gaps = 29/519 (5%)

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIE 361
                    +   D  E L        P    +Y   G L   N   L +   ++  D+ 
Sbjct: 422 TDSTEAVKTNRALDRSEKLFKSIFANIPAGVEIYDKDGFLIDLNNKDLEIFGVENKQDVI 481

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                        + D    + ++ +R + +   A    H  + +   ++ +     +  
Sbjct: 482 GVNFFENPNVPQHIRDRVRDEDLVDFRLNYSFERAEGYYHPDRRD---TIDIYTKVSKLY 538

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA---IINREGI-ILST 477
           +          I  ++ +      ++         I +    G A   ++NR+G  I   
Sbjct: 539 DNEGNFNGYILISIDNTEQIDAMNRIRDFENFFLLISDYAKVGYAKLNLLNRKGYAIKQW 598

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS-TKEE 536
            + + +    P+ D++       +       +  +  E+   + +    ++ +    K+ 
Sbjct: 599 YKNLGEEEDTPLADVVG--VYRNMHPEDRERIFDFYREVRKGNRKHFQGEMRIYRPGKKN 656

Query: 537 KLLSLRIIIK-----KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
           +   +R+ +                  +DI+E K+ + +L  A+  AE     KS FLA 
Sbjct: 657 EWNWIRMNVVVTTYNPEENEVEIIGINYDITELKETEKELILARDKAEMMDRLKSAFLAN 716

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           +SHEIRTPL AI+GFS+++ +            EY   +  + +L+L +++D+LD+SKIE
Sbjct: 717 MSHEIRTPLNAIVGFSDLLVDTE----NIEERREYIQIVKENNDLLLQLISDILDLSKIE 772

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
           +G        V ++    + +  +Q+   E  + +         RI++D   + Q+  N 
Sbjct: 773 AGTFEFTNGDVDVNMLCEDIVRSMQMKVKE-NVELMFDPHLAECRIISDRNRLHQVISNF 831

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEE-VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           ++NAI FT  G    I   +    E +   V+DTGVG+         + F ++ +     
Sbjct: 832 VNNAIKFTSEGS---IRVGYKQKGEELEFYVQDTGVGIDAESQAHIFERFVKLNSFVH-- 886

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             GTGLGL + +++V+   GK  + S P KG+      P
Sbjct: 887 --GTGLGLSICQSIVEQMGGKIGVESEPGKGSRFWFSLP 923



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/157 (14%), Positives = 55/157 (35%), Gaps = 6/157 (3%)

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
           PE     G+  +  +     R ++       SI      G+ I +++G ++  N    ++
Sbjct: 412 PEKDEVVGLFTDSTEAVKTNRALDRSEKLFKSIFANIPAGVEIYDKDGFLIDLNNKDLEI 471

Query: 485 FGYP-VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK-LLSLR 542
           FG    +D++   F                 +++   L  + E+       + +  + + 
Sbjct: 472 FGVENKQDVIGVNFFENPNVPQHIRDRVRDEDLVDFRLNYSFERAEGYYHPDRRDTIDIY 531

Query: 543 IIIKKLPFS----SCYSLTMHDISEWKQEKNKLSHAK 575
             + KL  +    + Y L   D +E     N++   +
Sbjct: 532 TKVSKLYDNEGNFNGYILISIDNTEQIDAMNRIRDFE 568


>gi|29349465|ref|NP_812968.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|29341374|gb|AAO79162.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 921

 Score =  335 bits (858), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 102/519 (19%), Positives = 202/519 (38%), Gaps = 29/519 (5%)

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIE 361
                    +   D  E L        P    +Y   G L   N   L +   ++  D+ 
Sbjct: 412 TDSTEAVKTNRALDRSEKLFKSIFANIPAGVEIYDKDGFLIDLNNKDLEIFGVENKQDVI 471

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                        + D    + ++ +R + +   A    H  + +   ++ +     +  
Sbjct: 472 GVNFFENPNVPQHIRDRVRDEDLVDFRLNYSFERAEGYYHPDRRD---TIDIYTKVSKLY 528

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA---IINREGI-ILST 477
           +          I  ++ +      ++         I +    G A   ++NR+G  I   
Sbjct: 529 DNEGNFNGYILISIDNTEQIDAMNRIRDFENFFLLISDYAKVGYAKLNLLNRKGYAIKQW 588

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS-TKEE 536
            + + +    P+ D++       +       +  +  E+   + +    ++ +    K+ 
Sbjct: 589 YKNLGEEEDTPLADVVG--VYRNMHPEDRERIFDFYREVRKGNRKHFQGEMRIYRPGKKN 646

Query: 537 KLLSLRIIIK-----KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
           +   +R+ +                  +DI+E K+ + +L  A+  AE     KS FLA 
Sbjct: 647 EWNWIRMNVVVTTYNPEENEVEIIGINYDITELKETEKELILARDKAEMMDRLKSAFLAN 706

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           +SHEIRTPL AI+GFS+++ +            EY   +  + +L+L +++D+LD+SKIE
Sbjct: 707 MSHEIRTPLNAIVGFSDLLVDTE----NIEERREYIQIVKENNDLLLQLISDILDLSKIE 762

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
           +G        V ++    + +  +Q+   E  + +         RI++D   + Q+  N 
Sbjct: 763 AGTFEFTNGDVDVNMLCEDIVRSMQMKVKE-NVELMFDPHLAECRIISDRNRLHQVISNF 821

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEE-VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           ++NAI FT  G    I   +    E +   V+DTGVG+         + F ++ +     
Sbjct: 822 VNNAIKFTSEGS---IRVGYKQKGEELEFYVQDTGVGIDAESQAHIFERFVKLNSFVH-- 876

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             GTGLGL + +++V+   GK  + S P KG+      P
Sbjct: 877 --GTGLGLSICQSIVEQMGGKIGVESEPGKGSRFWFSLP 913



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/157 (14%), Positives = 55/157 (35%), Gaps = 6/157 (3%)

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
           PE     G+  +  +     R ++       SI      G+ I +++G ++  N    ++
Sbjct: 402 PEKDEVVGLFTDSTEAVKTNRALDRSEKLFKSIFANIPAGVEIYDKDGFLIDLNNKDLEI 461

Query: 485 FGYP-VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK-LLSLR 542
           FG    +D++   F                 +++   L  + E+       + +  + + 
Sbjct: 462 FGVENKQDVIGVNFFENPNVPQHIRDRVRDEDLVDFRLNYSFERAEGYYHPDRRDTIDIY 521

Query: 543 IIIKKLPFS----SCYSLTMHDISEWKQEKNKLSHAK 575
             + KL  +    + Y L   D +E     N++   +
Sbjct: 522 TKVSKLYDNEGNFNGYILISIDNTEQIDAMNRIRDFE 558


>gi|39726361|gb|AAR30123.1| putative histidine kinase HHK6p [Gibberella moniliformis]
          Length = 1369

 Score =  335 bits (858), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 105/562 (18%), Positives = 190/562 (33%), Gaps = 48/562 (8%)

Query: 295  NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTK 353
             +              ++   +  E       D  P   +     G + + N  F   T 
Sbjct: 485  LAGVVTGRDVTVMTEEITQIKERDEERFKLICDTMPQLVWTAMPDGMVDFWNTRFYTYTG 544

Query: 354  YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
                + +  +             D+          S  T  +          +      +
Sbjct: 545  LTPENSLGKS------WVNAFHPDDLPEAHRRWQHSLDTGDSYVTEYRCQSKDGNWRWYL 598

Query: 414  TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
                 ++  +  +     G   +  ++   K   +    QL S++  +   I  ++    
Sbjct: 599  GRALPQRNKETGKVEKWFGTCTDVHESIQTKMSAKRTRQQLLSVIAHSHVTIFTVDPNRR 658

Query: 474  ILS------TNRAVSKLFGYPVEDI------LRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
            +         N    +        I      +    T  L           +  +L    
Sbjct: 659  VTMLEGALIWNNTHEENHDGTRWFIGENMYTVFNRLTAQLADGERPEFLEPIELLLDGKA 718

Query: 522  RQTL-EKITLGSTKEEKLLSLRIIIKKLPFS------SCYSLTMHDISEWKQEKNKLSHA 574
             + L E          + L +     +   +            + D++E K  +  L   
Sbjct: 719  TEDLKEHGIDDRWYRTRFLPMFGKRPQEGDATSDTYIEGVIGVIMDVTELKVREEALEKQ 778

Query: 575  KKIAEKES----------SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
             K   +              KS FLA +SHEIRTP+T ++G +E++   +     +    
Sbjct: 779  SKEKRRAMANEAAAKEANRLKSQFLANMSHEIRTPITGVLGMAELLSGMQL----DAEQQ 834

Query: 625  EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
            EY   I  S   +L ++ND+LD SK+ESG++++     SL   V E   ++Q     K +
Sbjct: 835  EYVENIQSSATSLLTVINDILDFSKVESGRLDIEEVQFSLSHIVKEVGRMLQFAVERKNL 894

Query: 685  LIRTSFANNIPR---ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EV 737
              ++   + I     ++ D   V+QI  N+L+N+I FT  G  +  S T         EV
Sbjct: 895  DFQSDIGDGIENDLVVIGDPGRVRQILTNLLTNSIKFTNQG-YVRFSVTAEKETSESIEV 953

Query: 738  ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
               V D+G+G+ +   +K  +PF Q   S   R  GTGLGL + K ++D   G+  + S 
Sbjct: 954  RFTVEDSGIGIQDDVRKKLFQPFSQGDASTARRFGGTGLGLTICKNLLDLMHGRISLESN 1013

Query: 798  PAKGTLIEIIFPLYDTSHPHDC 819
               GT      P    S P + 
Sbjct: 1014 VGVGTRATFWIPFNKPSGPAEA 1035



 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/172 (8%), Positives = 39/172 (22%), Gaps = 7/172 (4%)

Query: 70  SENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI-D 128
            E  F         +  W     G +   +       G      +G    +      + +
Sbjct: 508 DEERFKLICDTMP-QLVWTAMPDGMVDFWNTRFYTYTGLTPENSLGKSWVNAFHPDDLPE 566

Query: 129 PNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYS-RNREFSGFRGFGIVHVN 187
            +      L   +++  +      +G   +      ALP  +    +    + FG     
Sbjct: 567 AHRRWQHSLDTGDSYVTEYRCQSKDGN--WRWYLGRALPQRNKETGKVE--KWFGTCTDV 622

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK 239
                 +   KR  ++   +                +   +          +
Sbjct: 623 HESIQTKMSAKRTRQQLLSVIAHSHVTIFTVDPNRRVTMLEGALIWNNTHEE 674


>gi|114566147|ref|YP_753301.1| signal transduction histidine kinase-like protein [Syntrophomonas
            wolfei subsp. wolfei str. Goettingen]
 gi|114337082|gb|ABI67930.1| multi-sensor hybrid histidine kinase [Syntrophomonas wolfei subsp.
            wolfei str. Goettingen]
          Length = 1442

 Score =  335 bits (858), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 129/789 (16%), Positives = 251/789 (31%), Gaps = 79/789 (10%)

Query: 86   TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCD----VSDILHIDPNNHIGDLLKRQN 141
             W+ DA       S+E    +G    ++ G  L +    V           +      Q 
Sbjct: 265  VWDWDAVTNRVFFSKEWKSMLGYEEHEV-GDSLQEWESRVHPEDWERIQVELQKHFDGQT 323

Query: 142  TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
              YG          +    +D   +       +    R  G           +    R  
Sbjct: 324  PVYGSEHRLRTRDGSYKWLLDRGKVINRDEEGKV--LRVIGTHTDITEIKKVQEDLSRTR 381

Query: 202  KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL--RMKNKVSSLTEYYAHKDDVLKTEKY 259
             +   + +     +  + ++                 ++++   T+      ++      
Sbjct: 382  GQLKAILDNLPFLAWFKDKEGHHIEVNRFFEISCGLTRDEIIGKTDLDIWPRELALVYME 441

Query: 260  PLLTSEESSLPEQEDFHTIN-LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD-- 316
                   S     +     +         +   + +               + S   +  
Sbjct: 442  DDREVMASKKQINKVERVQDKAGGIWFNTFKTPVFDQEGNVIGTAGITRDITESRRLEHE 501

Query: 317  --EGENLTPETVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLS------ 367
              E        +D  P   F     +L    N +F       S ++I     L       
Sbjct: 502  LIEQRTFLKSLIDAIPDLIFYKDINSLYLGCNHAFAHRFIGLSEEEIVGRTDLDFVKDQE 561

Query: 368  --TLLDAPKLS----DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                               +    +  +D + +               +  +        
Sbjct: 562  TARFFIQKDREILLSGETRMNEETITLADGSIMELETVKTPFFKGGTVAGLIGVSRDITK 621

Query: 422  NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI---LEATSDGIAIINREGIILST- 477
             +  +N      +    +      ++ I      +I   L    +   +      +    
Sbjct: 622  RKIAQNQLLIKQKI-LSNIASATNELLINSDYYEAINKCLALLGEATGV----DRVYMFK 676

Query: 478  -----NRAVSKL-FGYPVEDILRK---PFTVFLEQNTPSVMNHYL--TEILSLDLRQTLE 526
                 N+A +    G+       +   P    +  +        L   E +   +R   E
Sbjct: 677  NHYADNKAYTSYRMGWNSGVFPAQINNPKLQNIPFDQAQNFIEPLMRNEAVKAQVRDFGE 736

Query: 527  KITLGSTKEEKLLSLRIIIKKLPFS-SCYSLT-----------------------MHDIS 562
                 +  E+ +LS+ ++   +      Y                          + +  
Sbjct: 737  GWIKETLLEQSILSILVLPIFVGGVFWGYVGFDECKEERNWSEDEFSILKAFSNSIAEAI 796

Query: 563  EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
            E  Q + KL+ AK+IAE  +  KS FLA +SHEIRTP+  I+GF E++            
Sbjct: 797  ERSQMEQKLAQAKEIAESANYAKSLFLANMSHEIRTPMNGILGFLELLGETELST----E 852

Query: 623  YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
              +Y     R+  ++L ++ND+LD SKIE+GK+ +   P  +   V +A+SL    A EK
Sbjct: 853  QQDYVQEAHRASEILLYLINDILDFSKIEAGKLAMEEIPFRVRTVVEDAVSLQAPKAREK 912

Query: 683  RILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQ-IIIST--THTSNEEVI 738
             + + T   +N+P  ++ D   ++QI  N+LSNA+ FT +G   +I+ T    +   E+ 
Sbjct: 913  GLEMHTLIKSNVPDEVVGDPARLRQILNNLLSNAVKFTHTGEILVIVETINESSDKAEIA 972

Query: 739  LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
              V D+G+G+   ++EK  +PF Q   S   +  GTGLGL ++  +V    G   + S  
Sbjct: 973  FEVSDSGIGIAPEDMEKLFQPFTQADASTTRKYGGTGLGLAISYELVRLMEGTMQVKSKL 1032

Query: 799  AKGTLIEII 807
             +G+     
Sbjct: 1033 GQGSKFYFT 1041



 Score =  132 bits (331), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 69/536 (12%), Positives = 162/536 (30%), Gaps = 36/536 (6%)

Query: 73  TFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH 132
            F  +P    +     ID+ G   +++E     +     ++IG    ++  I   + +  
Sbjct: 133 AFSINPALMAIS---KIDS-GKYIDVNEAFLSRLEYNRDEVIGKTSGELGIIPFAERDLL 188

Query: 133 IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192
           I +L ++      + TL    G+ LYV   +  +    +    +      ++        
Sbjct: 189 IKELYQQGCIRDKELTLITKSGSELYVIFSVDFIETDDQTYLLT------VMVDITGRKI 242

Query: 193 PRALGKRLDKKFSHLHEIK-KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD 251
              L K  + ++S   E    G    +     +F  +     L  +      +       
Sbjct: 243 AEELLKESEDRWSSALECSGNGVWDWDAVTNRVFFSKEWKSMLGYEEHEVGDSLQEWESR 302

Query: 252 ------DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL-QNNSKESFEYLS 304
                 + ++ E       +      +    T + +          + ++   +    + 
Sbjct: 303 VHPEDWERIQVELQKHFDGQTPVYGSEHRLRTRDGSYKWLLDRGKVINRDEEGKVLRVIG 362

Query: 305 HRNHPSLSAYFDEGENLTP----ETVDKCP-IPFFVYSHGNLFYANPSFLLLTKYKSVDD 359
                +      E  + T       +D  P + +F    G+    N  F +       D+
Sbjct: 363 THTDITEIKKVQEDLSRTRGQLKAILDNLPFLAWFKDKEGHHIEVNRFFEISCGLTR-DE 421

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
           I     L        L      + VM  +        +             +        
Sbjct: 422 IIGKTDLDIWPRELALVYMEDDREVMASKKQ-----INKVERVQDKAGG--IWFNTFKTP 474

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
             +Q    +   GI  +  ++R  + ++  +   L S+++A  D I   +   + L  N 
Sbjct: 475 VFDQEGNVIGTAGITRDITESRRLEHELIEQRTFLKSLIDAIPDLIFYKDINSLYLGCNH 534

Query: 480 AVSKLF-GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
           A +  F G   E+I+ +    F++    +         + L     + + T+    +  +
Sbjct: 535 AFAHRFIGLSEEEIVGRTDLDFVKDQETARFFIQKDREILLSGETRMNEETITL-ADGSI 593

Query: 539 LSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
           + L  +                  DI++ K  +N+L   +KI    +S  ++ L  
Sbjct: 594 MELETVKTPFFKGGTVAGLIGVSRDITKRKIAQNQLLIKQKILSNIASATNELLIN 649



 Score =  122 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 53/519 (10%), Positives = 143/519 (27%), Gaps = 36/519 (6%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144
           + + I+ +G     +    + +G    ++ G+ L  +      D    I   +      +
Sbjct: 24  YLFIINENGNAVYANRAAIEKLGYSQEEIQGLSLLLLQPPERRDEAAQIFASMMAGQRDH 83

Query: 145 GKTTLWPIEGTNLYVPIDLA-------ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG 197
               L+  +G+  Y+P++ +         P++           F I       +   A  
Sbjct: 84  CPIPLYTKDGS--YIPVETSVVRGQWQGTPVF-----------FAISKDISQISQANARF 130

Query: 198 KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH--KDDVLK 255
                K   ++      S ++  KY   ++         +++V   T             
Sbjct: 131 ----SKAFSINPALMAISKIDSGKYIDVNEAFLSRLEYNRDEVIGKTSGELGIIPFAERD 186

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYT-KKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
                L         E           Y      F    + +      +           
Sbjct: 187 LLIKELYQQGCIRDKELTLITKSGSELYVIFSVDFIETDDQTYLLTVMVDITGRKIAEEL 246

Query: 315 FDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
             E E+     ++      + +    N  + +  +  +  Y+  +     G      ++ 
Sbjct: 247 LKESEDRWSSALECSGNGVWDWDAVTNRVFFSKEWKSMLGYEEHE----VGDSLQEWESR 302

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP-FEKANQFPENMPQNG 432
              ++     V L +            H ++    +   +         ++  + +   G
Sbjct: 303 VHPEDWERIQVELQKHFDGQTPVYGSEHRLRTRDGSYKWLLDRGKVINRDEEGKVLRVIG 362

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
              +  + +  +  +     QL +IL+         ++EG  +  NR      G   ++I
Sbjct: 363 THTDITEIKKVQEDLSRTRGQLKAILDNLPFLAWFKDKEGHHIEVNRFFEISCGLTRDEI 422

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
           + K       +    V      E+++    Q  +   +         +           +
Sbjct: 423 IGKTDLDIWPRELALVYMEDDREVMASKK-QINKVERVQDKAGGIWFNTFKTPVFDQEGN 481

Query: 553 --CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
               +    DI+E ++ +++L   +   +       D +
Sbjct: 482 VIGTAGITRDITESRRLEHELIEQRTFLKSLIDAIPDLI 520



 Score = 65.4 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/126 (15%), Positives = 39/126 (30%), Gaps = 5/126 (3%)

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
           +        ++     D + IIN  G  +  NRA  +  GY  E+I      +       
Sbjct: 7   LNEVKASFDTLFNTIEDYLFIINENGNAVYANRAAIEKLGYSQEEIQGLSLLLLQPPERR 66

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK--LPFSSCYSLTMHDISEW 564
                    +++    Q         TK+   + +   + +     +  +     DIS+ 
Sbjct: 67  DEAAQIFASMMAG---QRDHCPIPLYTKDGSYIPVETSVVRGQWQGTPVFFAISKDISQI 123

Query: 565 KQEKNK 570
            Q   +
Sbjct: 124 SQANAR 129


>gi|145219188|ref|YP_001129897.1| Hpt sensor hybrid histidine kinase [Prosthecochloris vibrioformis
           DSM 265]
 gi|145205352|gb|ABP36395.1| Hpt sensor hybrid histidine kinase [Chlorobium phaeovibrioides DSM
           265]
          Length = 869

 Score =  335 bits (858), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 88/391 (22%), Positives = 158/391 (40%), Gaps = 38/391 (9%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
             +      L ++L  + D I  ++ +  I+  NR    L G  +   +   F   +   
Sbjct: 65  ASLRTSENTLATVLANSPDTIVAVDADYSIIYVNRT---LPGCTLPLRVGGSFCEHMSSE 121

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH---DI 561
              +    +  + +      +E   +        + +   I         +  +    DI
Sbjct: 122 GQRLYRQAIDTVFASGQATAIEWKIM--VPGGGSIEVESRIGPSFQDGRVASVVILTSDI 179

Query: 562 SEWKQEKNKLSH---------------------AKKIAEKESSHKSDFLARVSHEIRTPL 600
           S  KQ +  L                           A   +  KS FLA +SHEIRTP+
Sbjct: 180 SPRKQLERDLQQSFGELEEFNRRLEESVLKTEQMAAEARDANVAKSQFLANMSHEIRTPM 239

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
             +IG ++++              +YA  I RS   +L I+ND+LD SKIE+ +  L   
Sbjct: 240 NGVIGMADLLLETALDT----EQRKYAQTIIRSARSLLKIINDILDFSKIEANRFELEHS 295

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFT 719
              L + + E   ++ + A+E R+ +       IP  ++ D   ++QI +N+L NA+ FT
Sbjct: 296 DFELCDLLMEISGILGIEAHESRLELSVHVVPEIPTSLIGDSGRIRQILVNLLGNAVKFT 355

Query: 720 PSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           P GG++ +        +    +   V DTGVG+   +++   +PF Q   S   +  GTG
Sbjct: 356 PVGGEVGVKLKLQQETDRFVVIQFSVFDTGVGIPPEQVDSIFEPFTQADGSTARKYGGTG 415

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           LGL ++  +     G+  + S P +G++   
Sbjct: 416 LGLSISNHLATRMGGRINVESHPGEGSVFSF 446


>gi|332701992|ref|ZP_08422080.1| signal transduction histidine kinase with CheB and CheR activity
            [Desulfovibrio africanus str. Walvis Bay]
 gi|332552141|gb|EGJ49185.1| signal transduction histidine kinase with CheB and CheR activity
            [Desulfovibrio africanus str. Walvis Bay]
          Length = 1935

 Score =  335 bits (858), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 124/835 (14%), Positives = 268/835 (32%), Gaps = 103/835 (12%)

Query: 54   FTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM 113
            F D  Q   ++     SE  F        V         G   ++++   + +G    ++
Sbjct: 1003 FADIGQRIEADRLLRASEERFRATFEQAAVGIAHR-GPGGVFIQMNDRYCEIVGRSREEL 1061

Query: 114  IGMRLCDVSDILHIDPNNHIGDLLKRQ--NTWYGKTTLWPIEGTNLYVPIDLAALPIYSR 171
            + ++  D++    +D +  +   L     +T+  +      + +     + L+   +   
Sbjct: 1062 LDLKSQDITHPDDVDEDFELTGRLMSGQIDTYSREKRYLRKDDSPA--WVSLSVSLVKGP 1119

Query: 172  NREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231
            + E        +V                 +  +   E              +       
Sbjct: 1120 DGEP--AYAIAVVQDISARKQAEER----AESVAKFPEQNPYPVLRFDRNGTLLYANKAS 1173

Query: 232  PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291
              L    +           + + +  +       E  L        I             
Sbjct: 1174 RLLVGSPESPLEKTSGDLLETIRQAVRMGQRRDMEVFLDGSAYLLAI-----------AP 1222

Query: 292  LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLL 350
            + +    +   +       +     E +              +           +     
Sbjct: 1223 IPDQDYVNVYGMDVTALTRVQNALRESQADLDRAQTVAQTGSWRLDIRRNELIWSDETYR 1282

Query: 351  LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
            L                  L      D   +                 R+          
Sbjct: 1283 LFGIP----HGTPLTYELFLSRVHPDDREQVATKWTAAIQGEAYDIEHRIVV----AGAV 1334

Query: 411  LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM--EIEVMQLCSILE-----ATSD 463
              +  +   + +   E +   G   +  D +  ++++    E  +  + +E     A  D
Sbjct: 1335 KWVREVAELEFDGKGELLGGFGTVQDITDRKRMEQELILAKEKAEQRARIEERLAQAAQD 1394

Query: 464  GIAIINREGIILSTNRAVSKLFGYPVEDILRK----------------------PFTVFL 501
                 + E I+     +  +L G      + +                      P  + +
Sbjct: 1395 LSTARDLESIMTVVRTSTRELTGADGVSFVLRDGDKCFYADEDAIEPLWKGQRFPMEMCI 1454

Query: 502  EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII-------------IKKL 548
                       + + +  D R  ++       K   ++ +R                   
Sbjct: 1455 SGWVMLNRQTAVIKDIYADPRIPMDTYRPTFVKSLAMVPVRSANPVAAIGAYWAAEHNPE 1514

Query: 549  PFSSCYSLTMHDIS-----------EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
            P +  +  ++ D++           E +Q  + L   K++AE+ +  KS+FLA +SHEIR
Sbjct: 1515 PDAVRFLQSLADLASVAMDNVRLYDELRQWADALEAQKEVAEQATRAKSEFLANMSHEIR 1574

Query: 598  TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
            TP+  I+G +E+   +    + + +  EY     +SG  +LDI+ND+LD+SKIE+GK+ L
Sbjct: 1575 TPMNGILGMNELALMR----VSDSQAREYLLLAKKSGLALLDIINDILDLSKIEAGKIAL 1630

Query: 658  HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAI 716
              EP  L + +   +  + L A+EK + I  +  +  P+ ++ D   ++Q+  N++SNA+
Sbjct: 1631 DQEPFDLRDVLDSTLKPLSLGADEKGLHIHHTLEDCAPQRLIGDKGRLRQVLTNLVSNAV 1690

Query: 717  HFTPSGG-QIIIS----TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
             F+  G  ++ +S     +     +++  V D G+G+   +L    + F Q+ +S  I+ 
Sbjct: 1691 KFSDQGVVRVTVSNNGEASSPDRTQLLFTVADQGIGIPPDKLASIFESFAQLKSSAHIKY 1750

Query: 772  EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF---------PLYDTSHPH 817
             GTGLGL + + +V+   G  +  S   KG+               P  +T  P 
Sbjct: 1751 GGTGLGLTICRQLVELMGGSIWAESEVGKGSTFFFTIECDVAQEVEPKAETGRPQ 1805



 Score =  111 bits (277), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 69/586 (11%), Positives = 163/586 (27%), Gaps = 66/586 (11%)

Query: 32   NGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDA 91
            N   T  +   +   D     N   Q    +       +E   +F             D 
Sbjct: 859  NELATANAALTDLLADVETARNEAQQRARELDAAISSMTEGIMLF-------------DQ 905

Query: 92   HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI---LHIDPNNHIGDLLK-----RQNTW 143
               L +I++      G    +M+ + L D +       +D    + D L         T 
Sbjct: 906  DKRLVKINQVAQDMFGYTT-EMLALSLKDRAGPLLAETLDGQPVVFDSLPIMRAFGGETV 964

Query: 144  YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                  + I G +  +   ++A P+   +    G              +   L +  +++
Sbjct: 965  RDMEIKYGIPGRSEPLYASVSAAPVQLPDGRQIGA--IVTFADIGQRIEADRLLRASEER 1022

Query: 204  FSHLHEIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSSLTEYYAHKDDVLKT---EK 258
            F    E      +                    R + ++  L        D +       
Sbjct: 1023 FRATFEQAAVGIAHRGPGGVFIQMNDRYCEIVGRSREELLDLKSQDITHPDDVDEDFELT 1082

Query: 259  YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
              L++ +  +   ++ +   + +          ++    E    ++     S     +E 
Sbjct: 1083 GRLMSGQIDTYSREKRYLRKDDSPAWVSLSVSLVKGPDGEPAYAIAVVQDISARKQAEER 1142

Query: 319  ENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
                 +  ++ P P   +  +G L YAN +   L        +E   G            
Sbjct: 1143 AESVAKFPEQNPYPVLRFDRNGTLLYANKA-SRLLVGSPESPLEKTSG------------ 1189

Query: 378  NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
             + ++ +               L        ++  +   P    +        N    + 
Sbjct: 1190 -DLLETIRQAVRMGQRRDMEVFL------DGSAYLLAIAPIPDQD------YVNVYGMDV 1236

Query: 438  VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE-DILRKP 496
                  +  +      L         G   ++     L  +    +LFG P    +  + 
Sbjct: 1237 TALTRVQNALRESQADLDRAQTVAQTGSWRLDIRRNELIWSDETYRLFGIPHGTPLTYEL 1296

Query: 497  FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS- 555
            F   +  +    +    T  +  +      +I +       +  +R + +          
Sbjct: 1297 FLSRVHPDDREQVATKWTAAIQGEAYDIEHRIVVA----GAVKWVREVAELEFDGKGELL 1352

Query: 556  ---LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
                T+ DI++ K+ + +L  AK+ AE+ +  +   LA+ + ++ T
Sbjct: 1353 GGFGTVQDITDRKRMEQELILAKEKAEQRARIEER-LAQAAQDLST 1397



 Score =  110 bits (275), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 33/385 (8%), Positives = 92/385 (23%), Gaps = 13/385 (3%)

Query: 198  KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257
             R + +   L ++     S +++      +++      ++ +V S      H        
Sbjct: 759  LRQEDRGRPLFQLASLLESGQEDALAEDCRRALTELASIEKEVRSKPGRTFHVRISPYHS 818

Query: 258  KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY------LSHRNHPSL 311
               ++        +  +   +       +     L                    +  + 
Sbjct: 819  LANVIEGLVLIFVDITERKAMEEELRQHRDELERLVAERTNELATANAALTDLLADVETA 878

Query: 312  SAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVD-DIEIAGGLSTL 369
                 +        +        ++     L   N     +  Y +    + +      L
Sbjct: 879  RNEAQQRARELDAAISSMTEGIMLFDQDKRLVKINQVAQDMFGYTTEMLALSLKDRAGPL 938

Query: 370  LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
            L             + + R+          +      R   L  +             + 
Sbjct: 939  LAETLDGQPVVFDSLPIMRAFGGETVRDMEIKYGIPGRSEPLYASVSAAPVQLPDGRQIG 998

Query: 430  QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
                  +        R +     +  +  E  + GIA     G+ +  N    ++ G   
Sbjct: 999  AIVTFADIGQRIEADRLLRASEERFRATFEQAAVGIAHRGPGGVFIQMNDRYCEIVGRSR 1058

Query: 490  EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
            E++L          +           ++S     T  +      K++    + + +  + 
Sbjct: 1059 EELLDLKSQDITHPDDVDEDFELTGRLMS-GQIDTYSREKRYLRKDDSPAWVSLSVSLVK 1117

Query: 550  FSSC----YSLTMHDISEWKQEKNK 570
                        + DIS  KQ + +
Sbjct: 1118 GPDGEPAYAIAVVQDISARKQAEER 1142



 Score = 65.8 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 20/157 (12%), Positives = 50/157 (31%), Gaps = 4/157 (2%)

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
            + +    ++      + ++  +T      +++   I       + +F    ++   +P 
Sbjct: 710 TELQAKVAELADLNSDIENLFRSTEIATIFLDQRLSIKRFTPRATDIFHL-RQEDRGRPL 768

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYS 555
                    S     L E     L +         +K  +   +RI       +      
Sbjct: 769 FQL-ASLLESGQEDALAEDCRRALTELASIEKEVRSKPGRTFHVRISPYHSLANVIEGLV 827

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
           L   DI+E K  + +L   +   E+  + +++ LA  
Sbjct: 828 LIFVDITERKAMEEELRQHRDELERLVAERTNELATA 864


>gi|242278251|ref|YP_002990380.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens
           DSM 2638]
 gi|242121145|gb|ACS78841.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens
           DSM 2638]
          Length = 542

 Score =  335 bits (858), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 89/371 (23%), Positives = 167/371 (45%), Gaps = 19/371 (5%)

Query: 451 VMQLCSILEATSDGIAI--INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT-PS 507
             +   +++   + +++   N+   ++  N+A  KL+GY  E+ L       +  +    
Sbjct: 35  EERFRRLIDHV-EMVSVQGYNKNREVVFWNKASEKLYGYSQEEALGMKLEELIIPDYMRE 93

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---YSLTMHDISEW 564
            + +++ +     +R           K+  ++ +                     D++E 
Sbjct: 94  AVINHIQDWHDKGIRIPAG-ELDLIHKDGSIVPVYSAHVMQKNPDGSKYMYCIDVDLTET 152

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           K+   +L  AK+ AE  S  KS+FLA +SHEIRTPL  ++G  +++K          + +
Sbjct: 153 KKAHRQLIQAKEQAESASRAKSEFLANMSHEIRTPLNGVLGMLQLLK----SAPEKEKQL 208

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           EY          +  +++D+LD+S++E+GK+ +   P  L E +     L +  A +K +
Sbjct: 209 EYIELAVTGVKRLTTLLSDILDLSRVEAGKLAVDPAPFDLLELMQNLTDLYRPSAQQKGL 268

Query: 685 LIRTSFANN-IPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST-----THTSNEEVI 738
            +  S     I ++  D   ++Q+  NI+SNAI FT  G  I + T     T     +++
Sbjct: 269 KLNLSLHPTTITKLTGDSSRLQQVLTNIISNAIKFTNDG-IIKVETYPLPHTTAGTTKIL 327

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
             V DTG G+ + ++E+   PF Q+    Q   +G GLGL + K +V+   G   I S  
Sbjct: 328 FSVSDTGPGIPDSKMEELFSPFIQLSEGYQRTHQGAGLGLSICKQLVELMGGNISIESEL 387

Query: 799 AKGTLIEIIFP 809
             GT + +  P
Sbjct: 388 GIGTTVYLCIP 398


>gi|157694430|ref|YP_001488892.1| sensor histidine kinase [Bacillus pumilus SAFR-032]
 gi|157683188|gb|ABV64332.1| sensor histidine kinase [Bacillus pumilus SAFR-032]
          Length = 612

 Score =  335 bits (858), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 87/434 (20%), Positives = 168/434 (38%), Gaps = 32/434 (7%)

Query: 392 TCIAASARLHTIQWNRENSLAMT--FIPFEKANQFPENMPQNGIEPEDVDTRINKRKM-- 447
                    H I   R+ ++ +       +      + + Q       +   + + ++  
Sbjct: 200 GIFIFRTITHPISDMRKQAIELAKGNFSRKVRKYGHDEIGQLATTFNHLTRELEEAQLMT 259

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
           E E  +L S++   +DG+   N+ G I+  N    +L     E  L  P T  L      
Sbjct: 260 EGERKKLSSVIAYMTDGVIATNQNGAIILLNSPALELLNVSRETALEMPITSLLGLEDTH 319

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWK 565
                +           LE        +  +L +   + +            ++D++E +
Sbjct: 320 TFEDLVEN----QDSMLLEIE---REDQLSVLRVNFSVIQKEHGKIDGLIAVIYDVTEQE 372

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           +   +              + +F+A VSHE+RTPLT +  + E +     G         
Sbjct: 373 KIDAE--------------RREFVANVSHELRTPLTTMRSYLEALAEGAIG--DKELAPR 416

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           + +        ++ +VNDLL +SK +S     + E  +    +S  I   +    E+ + 
Sbjct: 417 FLSVTQNETERMIRLVNDLLQLSKFDSKDYQFNREWTNFIRFISLVIDRFE-MTKEQHVE 475

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-VILRVRDT 744
              +       +  D   + Q+  NI+SNA+ ++P GG I  +      +  V+  V+D 
Sbjct: 476 FIRNLPQREIYVEIDQDKITQVLDNIISNAMKYSPEGGHITFTVDLDEEKSLVLFSVKDE 535

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G+   +++K  + F ++  ++  +  GTGLGL +AK MV A+ G  +  S   KGT +
Sbjct: 536 GIGIPKKDMDKIFERFYRVDKARTRKLGGTGLGLAIAKEMVQAHGGDIWADSIEGKGTTV 595

Query: 805 EIIFPLYDTSHPHD 818
               P Y+     D
Sbjct: 596 TFTLP-YNEEQEDD 608


>gi|145613814|ref|XP_363416.2| hypothetical protein MGG_01342 [Magnaporthe oryzae 70-15]
 gi|145020837|gb|EDK04966.1| hypothetical protein MGG_01342 [Magnaporthe oryzae 70-15]
          Length = 1341

 Score =  335 bits (858), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 129/714 (18%), Positives = 241/714 (33%), Gaps = 81/714 (11%)

Query: 155 TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214
           ++L  P+ L   P          F  FG  + +   N P  L K L  K + L   +   
Sbjct: 252 SSLITPVSLGLSP----------FPPFGPPNSSTNQNGPSILTKLLTMKDATLDNSQMPI 301

Query: 215 SSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK--------DDVLKTEKYP---LLT 263
            ++ K+    F  ++     R     +S  +    +           L+ + YP   LL 
Sbjct: 302 LAMWKDGSASFPNKAARAMFRTDQSDASEGDALLRRWDVYDEDFTQALEPQDYPISILLR 361

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNN------SKESFEYLSHRNHPSLSAYFDE 317
           +E      +   +  +  +         +++       +   +          ++   + 
Sbjct: 362 TETPFTGIRIGMYNPDGQKVVFDVLGEAIKDEQTGEFLAGVIYCRDVSPMKQIINNMKEL 421

Query: 318 GENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
            +       D  P   +  +  G   + N  +   T     D +    G         + 
Sbjct: 422 EDEKFRLICDTMPQLVWTTTPDGRHDFYNDRWYRYTGLTKGDSLG--LGWKHPFHPDDMP 479

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
              A +      +         R      + E    +      +  +  E     G   +
Sbjct: 480 --EAERRWARSLATGQPYDVEYRCRN--KDGEWRWMLGRALPLRDPETKEIKKWFGTCTD 535

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL---------FGY 487
             ++   K   E    QL +++      I  ++ +  +        +             
Sbjct: 536 VHESIQAKVTAERLREQLLTVITHAHVTIFTVDNDRNVTML-EGALRWDATGENYRDLEG 594

Query: 488 PVEDILRKPFTVFL-------EQNTPSVMNHYLTEILSLDLRQTL-EKITLGSTKEEKLL 539
             +  + +             E          +  IL+    + + E    G     + +
Sbjct: 595 DSKWYVGRNMYEVFNTLNSHLEDGERPRFLEPIEAILAGKSTEDIQEHGFDGRWYRTRFI 654

Query: 540 SLRIIIKKLPF-------SSCYSLTMHDISEWKQEK----------NKLSHAKKIAEKES 582
            +   +K                  + D++E +  +           +L   +  A++ S
Sbjct: 655 PVSAKLKTAEGFSNNAGSIEGVIGVIFDVTELRAREMDLVEQAKERRQLVANEAAAKEAS 714

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
             KS FLA +SHEIRTP+T +IG SE+               EY   I RS N +L ++N
Sbjct: 715 RLKSQFLANMSHEIRTPITGVIGMSEL----LLDLELGDEEREYGENIYRSANALLAVIN 770

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR---ILA 699
           D+LD SK+ESG +++     SL   V +   ++   A  K +  ++  A++I     +L 
Sbjct: 771 DILDFSKVESGHLDIEEVQFSLSVIVGDVNKMLSFAAERKNLDFQSEIASDIEEDLVVLG 830

Query: 700 DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDTGVGMTNYELEK 755
           D   V+QI  N+L+N+I FT  G  +  S           E+   V DTG+G+      +
Sbjct: 831 DPGRVRQIITNLLTNSIKFTKQG-YVRFSVVKERETPDIIEIKFVVEDTGIGIDAQVRSR 889

Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             +PF Q   S   R  GTGLGL ++K +++   G+  + S   KGT      P
Sbjct: 890 LFQPFSQGDASTARRFGGTGLGLTISKNLLELMKGRMTLESAEGKGTTATFWIP 943



 Score = 65.8 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 16/150 (10%), Positives = 38/150 (25%), Gaps = 7/150 (4%)

Query: 57  QNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGM 116
              + + N      +  F         +  W     G     ++   +  G      +G+
Sbjct: 409 SPMKQIINNMKELEDEKFRLICDTMP-QLVWTTTPDGRHDFYNDRWYRYTGLTKGDSLGL 467

Query: 117 RLCDVSDILH-IDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYS-RNRE 174
                       +        L     +  +      +G   +  +   ALP+     +E
Sbjct: 468 GWKHPFHPDDMPEAERRWARSLATGQPYDVEYRCRNKDGE--WRWMLGRALPLRDPETKE 525

Query: 175 FSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
               + FG           +   +RL ++ 
Sbjct: 526 IK--KWFGTCTDVHESIQAKVTAERLREQL 553


>gi|134281863|ref|ZP_01768570.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei 305]
 gi|134246925|gb|EBA47012.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei 305]
          Length = 769

 Score =  335 bits (858), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 104/519 (20%), Positives = 180/519 (34%), Gaps = 27/519 (5%)

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEI 362
           S R + +L              +        V   HG L Y NPS   L        +  
Sbjct: 111 SRRANDALRRREAGARRYYETLLQSLTQGVVVSDRHGMLTYMNPSAAALIGC-DATAVRG 169

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
                                +          +       +  +    + +        +
Sbjct: 170 LPFRDVYRAYDGRGARVRASALEHVLRSGRSASVEGH--WLAPHDGQRVPIAEAASPLVD 227

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
              +      I  +    R      ++    L  ++EA+ D I  +     I S N A  
Sbjct: 228 SAGDMTGAVLIVRDISIERERSAASQM----LRRLVEASPDAIVGVGSNRRITSWNPAAR 283

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
           ++FGY           + +           L E +            L   ++   +   
Sbjct: 284 RMFGYDEHAARGCDVAMLIAPRWLRNHP--LPESVPDMREPIENVDVLCVRQDGGRMRAT 341

Query: 543 IIIKKLPFSSCYSL----TMHDISEWKQEKNK-------LSHAKKIAEKESSHKSDFLAR 591
           +    +       +    T+ D  E ++ + +          A++ A+  +  K + LA 
Sbjct: 342 MSASPVFDERDACIALSLTLRDTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLAT 401

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           VSHE+RTPL  I G+ EV++N   G L      +  + IDRS   +  +V D+LD S + 
Sbjct: 402 VSHELRTPLNVIYGWIEVLRNPVDGAL----QQQAIDAIDRSARSLSRMVGDILDASSLA 457

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
           +GK+ L   PV L   V++    +   A    I +    A     +  D   ++Q+  N+
Sbjct: 458 TGKLRLDAMPVDLVRIVNDVTGALGAAAQADGIALSVECALGTCIVSGDGERLRQMLSNL 517

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           LSNA  FTP GG++ +S       +  L V DTG G++   L    + F +   +     
Sbjct: 518 LSNAFKFTPRGGRVTVSLERHD-AQAKLTVADTGQGISPEFLPHVFEAFRRAEGAPASPR 576

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFP 809
            G GLGL + + + + + GK    S    +GT   I  P
Sbjct: 577 RGLGLGLSIVRHIAELHGGKVEAASAGKNRGTTFAITLP 615



 Score = 65.4 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/225 (12%), Positives = 54/225 (24%), Gaps = 5/225 (2%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK---RQNTWYGK 146
           D HG L  ++      IG  A  + G+   DV               L+   R       
Sbjct: 144 DRHGMLTYMNPSAAALIGCDATAVRGLPFRDVYRAYDGRGARVRASALEHVLRSGRSASV 203

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
              W        VPI  AA P+     + +G     IV    ++ +  A  + L +    
Sbjct: 204 EGHWLAPHDGQRVPIAEAASPLVDSAGDMTGA--VLIVRDISIERERSAASQMLRRLVEA 261

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
             +   G  S  +      + +    +     +   +    A +          +    E
Sbjct: 262 SPDAIVGVGSNRRITSWNPAARRMFGYDEHAARGCDVAMLIAPRWLRNHPLPESVPDMRE 321

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
                       +  +         + +                 
Sbjct: 322 PIENVDVLCVRQDGGRMRATMSASPVFDERDACIALSLTLRDTGE 366


>gi|317128536|ref|YP_004094818.1| multi-sensor signal transduction histidine kinase [Bacillus
           cellulosilyticus DSM 2522]
 gi|315473484|gb|ADU30087.1| multi-sensor signal transduction histidine kinase [Bacillus
           cellulosilyticus DSM 2522]
          Length = 597

 Score =  334 bits (857), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 88/364 (24%), Positives = 158/364 (43%), Gaps = 24/364 (6%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            +  E  QL  IL + +DG+  ++REG ++ TN   ++  G     +  + + V      
Sbjct: 251 ALNQEKEQLSRILSSMADGVITLDREGAVMVTNPPANEFIG---AWLYEQEYEVEESGEL 307

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
           P  + H    ++  +  Q  E    G         L   +            + D++E +
Sbjct: 308 PRELQHLFDLVVQEEKEQMGEVDVQGR----SWAILMTPLYDQQHVRGAVAVLRDMTEER 363

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
                              + DF+A VSHE+RTP++ + G+SE I +            E
Sbjct: 364 LH--------------DKLRKDFIANVSHELRTPISMLQGYSEAIIDGI--ASSEEEKTE 407

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
            A  I      +  +VN+LLD++++E+G + L+ E +S  +     +   Q  A E  I 
Sbjct: 408 LAQIIYDESLRMGRLVNELLDLARMEAGHIQLNVETISFTDFTKRVLRKFQGIAKEHGIK 467

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +      NI  + AD   ++Q+  N++ NAI  TP GG++ +         V + ++DTG
Sbjct: 468 LSGDIEENIQYVYADEDRIEQVLTNLIDNAIRHTPEGGEVTLQMEVLDQG-VKVNIQDTG 526

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G++  +L    + F +   ++     GTGLGL + K +V+A+ GK  + S   +GT   
Sbjct: 527 IGISEEDLPFVFERFYKADKARTRGRAGTGLGLAIVKNIVEAHHGKVSVHSKLNEGTTFS 586

Query: 806 IIFP 809
              P
Sbjct: 587 FFLP 590


>gi|254457181|ref|ZP_05070609.1| multi-sensor hybrid histidine kinase [Campylobacterales bacterium
           GD 1]
 gi|207085973|gb|EDZ63257.1| multi-sensor hybrid histidine kinase [Campylobacterales bacterium
           GD 1]
          Length = 1127

 Score =  334 bits (857), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 95/381 (24%), Positives = 169/381 (44%), Gaps = 15/381 (3%)

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
           E    +     +K   E+ +    L+     +AI + +G I   N    ++ GYP E+++
Sbjct: 400 EERLKEQTSEAKKALQELAEQKFALD-AHSIVAITDVKGTITFVNEKFIEISGYPREELI 458

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553
            K   +           + +   +S               K+     +   I      + 
Sbjct: 459 GKNHRLLNSGLHGMEFWNNMYATVSSGK--IWHDEVCNIAKDGHFYWVDTTIVPFMNENN 516

Query: 554 ----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
               Y     DI++ K  + +L  A +IAE+    KS+FLA +SHEIRTP+  +IG   +
Sbjct: 517 KPKSYVAIRTDITDKKAAELELIEANEIAEESVKAKSEFLATMSHEIRTPMNGVIGMLGL 576

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           + N +     +      A+  + S   +L ++ND+LD SK+E+ KM L     +L + + 
Sbjct: 577 LMNTKL----DETQRRQASLAEGSAKALLTLINDILDFSKLEAEKMELDNIDFNLRDELE 632

Query: 670 EAISLVQLYANEKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQII-- 726
                + + A EK I +    ++     I ADL  ++QI  NI+ NA+ FT  G  +I  
Sbjct: 633 TFRDTIAIKAQEKGIEVILDTSDIKTDIINADLGRIRQILFNIVGNAVKFTSKGHVLIKA 692

Query: 727 -ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
            ++     N  +IL++ DTG+G+ N +L++  + F Q+  S   +  GTGLGL + + + 
Sbjct: 693 SLTLVDKVNARLILKMSDTGIGIPNDKLDRLFESFSQVDASTTRKYGGTGLGLAIVQKLC 752

Query: 786 DANMGKFYIFSTPAKGTLIEI 806
               GK  + S    G+   +
Sbjct: 753 SLMGGKIDVKSDLGHGSTFTV 773



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/257 (8%), Positives = 73/257 (28%), Gaps = 21/257 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL-HIDPNNHIGDLLKRQNTWYGKT 147
            D  G +  ++E+  +  G    ++IG     ++  L  ++  N++   +     W+ + 
Sbjct: 433 TDVKGTITFVNEKFIEISGYPREELIGKNHRLLNSGLHGMEFWNNMYATVSSGKIWHDEV 492

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                +G   +V   +  +P  + N +   +    I                 ++     
Sbjct: 493 CNIAKDGHFYWVDTTI--VPFMNENNKPKSY--VAIRTDITDKKAAELELIEANEIAEES 548

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT-SEE 266
            + K    +    +          P   +   +  L      +    +         +  
Sbjct: 549 VKAKSEFLATMSHEIR-------TPMNGVIGMLGLLMNTKLDETQRRQASLAEGSAKALL 601

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
           + + +  DF  +   +         L++  +   + ++ +          +  ++  + +
Sbjct: 602 TLINDILDFSKLEAEKMELDNIDFNLRDELETFRDTIAIKAQEKGIEVILDTSDIKTDII 661

Query: 327 DKCPIPFFVYSHGNLFY 343
           +           G +  
Sbjct: 662 NA--------DLGRIRQ 670


>gi|138895847|ref|YP_001126300.1| two-component sensor histidine kinase [Geobacillus
           thermodenitrificans NG80-2]
 gi|196248739|ref|ZP_03147439.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           G11MC16]
 gi|134267360|gb|ABO67555.1| Two-component sensor histidine kinase [Geobacillus
           thermodenitrificans NG80-2]
 gi|196211615|gb|EDY06374.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           G11MC16]
          Length = 598

 Score =  334 bits (857), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 90/366 (24%), Positives = 156/366 (42%), Gaps = 24/366 (6%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            +  E  QL SIL + +DG+   +REG IL TN    +          +      +    
Sbjct: 252 ALNQEKEQLASILSSMADGVITFSREGEILITNPPAERFLQ--AWYFEQGNDAETMAP-L 308

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
           P  +      ++  +  Q+ E    G T     + L   +            + D++E +
Sbjct: 309 PPQVKELFARVVREEKEQSTEVTIQGRT----WVILMTPLYGKTMVRGAVAVLRDMTEER 364

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           +                  + DF+A VSHE+RTP+  + G+SE I +            E
Sbjct: 365 RL--------------DKLRKDFIANVSHELRTPIAMLQGYSEAIIDDI--AASEEEKKE 408

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
            A  I      +  +VNDLLD++++E+G + L +E V L   V   I      A EK+I 
Sbjct: 409 MAKVIYDESLRMGRLVNDLLDLARMEAGHIELQYEQVELVPYVERVIRKFYGLAKEKQIE 468

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +   F +    I  D   ++Q+  N++ NAI  T +GG + +    + +  V + V+D+G
Sbjct: 469 LTAEFRDENIEIAFDPDRIEQVLTNLIDNAIRHTEAGGTVRLIIERSGDG-VTIHVQDSG 527

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
            G+   +L    + F +   ++     GTGLGL +AK +V+ + G+  + S   +GT   
Sbjct: 528 SGIPEEDLPFVFERFYKADKARTRGRSGTGLGLAIAKNIVETHKGRITVHSKLNEGTTFS 587

Query: 806 IIFPLY 811
              P +
Sbjct: 588 FYLPAH 593


>gi|126456548|ref|YP_001077059.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei 1106a]
 gi|167908208|ref|ZP_02495413.1| sensor kinase/response regulator fusion protein [Burkholderia
           pseudomallei NCTC 13177]
 gi|167924404|ref|ZP_02511495.1| sensor kinase/response regulator fusion protein [Burkholderia
           pseudomallei BCC215]
 gi|242313239|ref|ZP_04812256.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei 1106b]
 gi|126230316|gb|ABN93729.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei 1106a]
 gi|242136478|gb|EES22881.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei 1106b]
          Length = 771

 Score =  334 bits (857), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 104/519 (20%), Positives = 180/519 (34%), Gaps = 27/519 (5%)

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEI 362
           S R + +L              +        V   HG L Y NPS   L        +  
Sbjct: 111 SRRANDALRRREAGARRYYETLLQSLTQGVVVSDRHGMLTYMNPSAAALIGC-DATAVRG 169

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
                                +          +       +  +    + +        +
Sbjct: 170 LPFRDVYRAYDGRGARVRASALEHVLRSGRSASVEGH--WLAPHDGQRVPIAEAASPLVD 227

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
              +      I  +    R      ++    L  ++EA+ D I  +     I S N A  
Sbjct: 228 SAGDMTGAVLIVRDISIERERSAASQM----LRRLVEASPDAIVGVGSNRRITSWNPAAR 283

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
           ++FGY           + +           L E +            L   ++   +   
Sbjct: 284 RMFGYDEHAARGCDVAMLIAPRWLRNHP--LPESVPDMREPIENVDVLCVRQDGGRMRAT 341

Query: 543 IIIKKLPFSSCYSL----TMHDISEWKQEKNK-------LSHAKKIAEKESSHKSDFLAR 591
           +    +       +    T+ D  E ++ + +          A++ A+  +  K + LA 
Sbjct: 342 MSASPVFDERDACIALSLTLRDTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLAT 401

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           VSHE+RTPL  I G+ EV++N   G L      +  + IDRS   +  +V D+LD S + 
Sbjct: 402 VSHELRTPLNVIYGWIEVLRNPVDGAL----QQQAIDAIDRSARSLSRMVGDILDASSLA 457

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
           +GK+ L   PV L   V++    +   A    I +    A     +  D   ++Q+  N+
Sbjct: 458 TGKLRLDAMPVDLVRIVNDVTGALGAAAQADGIALSVECALGTCIVSGDGERLRQMLSNL 517

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           LSNA  FTP GG++ +S       +  L V DTG G++   L    + F +   +     
Sbjct: 518 LSNAFKFTPRGGRVTVSLERHD-AQAKLTVADTGQGISPEFLPHVFEAFRRAEGAPASPR 576

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFP 809
            G GLGL + + + + + GK    S    +GT   I  P
Sbjct: 577 RGLGLGLSIVRHIAELHGGKVEAASAGKNRGTTFAITLP 615



 Score = 65.4 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/225 (12%), Positives = 54/225 (24%), Gaps = 5/225 (2%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK---RQNTWYGK 146
           D HG L  ++      IG  A  + G+   DV               L+   R       
Sbjct: 144 DRHGMLTYMNPSAAALIGCDATAVRGLPFRDVYRAYDGRGARVRASALEHVLRSGRSASV 203

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
              W        VPI  AA P+     + +G     IV    ++ +  A  + L +    
Sbjct: 204 EGHWLAPHDGQRVPIAEAASPLVDSAGDMTGA--VLIVRDISIERERSAASQMLRRLVEA 261

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
             +   G  S  +      + +    +     +   +    A +          +    E
Sbjct: 262 SPDAIVGVGSNRRITSWNPAARRMFGYDEHAARGCDVAMLIAPRWLRNHPLPESVPDMRE 321

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
                       +  +         + +                 
Sbjct: 322 PIENVDVLCVRQDGGRMRATMSASPVFDERDACIALSLTLRDTGE 366


>gi|119485163|ref|ZP_01619548.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
 gi|119457391|gb|EAW38516.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
          Length = 876

 Score =  334 bits (857), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 107/545 (19%), Positives = 197/545 (36%), Gaps = 54/545 (9%)

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364
                  A   + E           +  + +   G+  Y +     +   +         
Sbjct: 336 AERQQAEAALRDSEASLAHAQGIAQVGHWDLVIRGSHLYWSDQLYRILNLEPQS----VP 391

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
               L       ++  +    + +        +     +  +                  
Sbjct: 392 ATLELFLQSVHPEDQNLVRQSVEQVLYHQHPYTIDYRLVLSDGRQRFVCEQTVIS----- 446

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSK 483
                 +G   +  + + ++  +     +      A+  GI I    +   L  N +  +
Sbjct: 447 --PTRISGTVQDITERKRSEIALRASEERFSKTFAASPIGIGICTFSDECFLDVNESFLR 504

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
             G+    ++            P         +        LE        E +   + I
Sbjct: 505 QLGWKQNQVINATTQQLKLWVNPEEHLQLREVLQQHCQVSNLEIQVYNQASEIRNWLISI 564

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
            +  L  + C  +  +DI+E KQ  + L +AK+ AE  +  KS FLA +SHE+RTPL AI
Sbjct: 565 ELIDLGGTECLLMMGNDITERKQA-SLLRNAKEAAEAANRAKSLFLANMSHELRTPLNAI 623

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +G+SE +  +    +G   ++     I  +G+ +LD++ND+LD SKIE+G+MN H E  +
Sbjct: 624 LGYSE-LLREDAQDMGLEEFVGDLKNIHVAGHHLLDLINDILDFSKIEAGRMNFHLETYT 682

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG- 722
           +   + E  + +   A +     +   A+NI  I  D+  V+Q  LN+LSNA  FT  G 
Sbjct: 683 VATLLWEVETTIAPLAEKNTNTFKIEVADNIDIIHTDITKVRQSLLNLLSNACKFTEQGL 742

Query: 723 GQIIISTTHTSN--------------------------------------EEVILRVRDT 744
             + +ST  + +                                        VI +V DT
Sbjct: 743 VTLKVSTETSPDPTTELPTVPPPDLPHSTHQRDSQITDFPYAPEANTKPITYVIFQVIDT 802

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+GM+  ++     PF Q   S   +  GTGLGL + + + +   G+  + S   +G+  
Sbjct: 803 GIGMSPRQITTVFNPFTQADESTTRKYGGTGLGLTITRKLCELMGGELSVTSKLGQGSTF 862

Query: 805 EIIFP 809
            +  P
Sbjct: 863 IMRLP 867


>gi|138897043|ref|YP_001127496.1| sensory box histidine kinase YycG [Geobacillus thermodenitrificans
           NG80-2]
 gi|134268556|gb|ABO68751.1| Sensory box histidine kinase YycG [Geobacillus thermodenitrificans
           NG80-2]
          Length = 609

 Score =  334 bits (857), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 89/390 (22%), Positives = 161/390 (41%), Gaps = 25/390 (6%)

Query: 426 ENMPQNGIEPEDVDTRINKRKM--EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           + + Q  +   ++  ++ + +   E E  +L S+L   +DG+   +R G ++  N A   
Sbjct: 235 DEIGQLAMTFNNLTKKLQEAQATTEGERRKLESVLTHMTDGVIATDRRGRVILINDAALN 294

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +     E +L       L           L E  SL L  + ++             L +
Sbjct: 295 ILNVSRETVLSSSIVDVLGIADQYTFETLLEEHDSLILDFSTDEELYILRAS-----LSV 349

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
           I K+    +   + +HD++E ++                  +  F+A VSHE+RTPLT +
Sbjct: 350 IQKEGGLINGLIVVLHDVTEQEKI--------------DRERRQFVANVSHELRTPLTTM 395

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
             + E + +  +          +   +      ++ +VNDLL +SK++S    L    ++
Sbjct: 396 KSYLEALADGAWQ--DKEITPRFIQVVQNETERMIRLVNDLLHLSKLDSKDYKLKKTWIN 453

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
                 + I   +       I    +       I  D   + Q+  NI+SNAI ++P GG
Sbjct: 454 FSAYFHKIIDRFE-LTKSDNIRFVRNIPREAIFIEVDEDKITQVLDNIISNAIKYSPQGG 512

Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
            I         +E+I+ + D GVG+   +L K  + F ++  ++  +  GTGLGL +AK 
Sbjct: 513 TITFRVR-ELADEIIISISDEGVGIPKADLAKIFERFYRVDKARSRKLGGTGLGLAIAKE 571

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
           +V A+ G  +  S   KGT I    PL   
Sbjct: 572 LVIAHGGTIWAESKEHKGTTIYFTLPLERE 601


>gi|284035078|ref|YP_003385008.1| PAS/PAC sensor signal transduction histidine kinase [Spirosoma
            linguale DSM 74]
 gi|283814371|gb|ADB36209.1| PAS/PAC sensor signal transduction histidine kinase [Spirosoma
            linguale DSM 74]
          Length = 1066

 Score =  334 bits (857), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 127/762 (16%), Positives = 240/762 (31%), Gaps = 60/762 (7%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGM----RLCD-VSDILHIDP------------NN 131
             D  G ++ ++  L    G  A +++G      L + V     +D               
Sbjct: 324  TDTKGIIQLVNPALEAMTGYRADELVGQRTTGSLREPVLHQQQLDQLTLELGEAAGQGEE 383

Query: 132  HIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN 191
             +   + R N    + TL   EG  + V   +  L  Y    E  G+    I        
Sbjct: 384  VVARYVARHNFLRLENTLLTKEGRVIPVLSTVTGL--YDEQNELMGY--VDINTDISYRK 439

Query: 192  D-PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK 250
                AL +   +        K G         ++   ++    + +  + +         
Sbjct: 440  TVEEALMQAGQRSQLATKAGKLGIWEWNLLTDELILDENFYTLVGIPKRTALARMSDVEP 499

Query: 251  ---DDVLKTEKYPLLTSEESSLPEQEDFH---TINLNQYTKKQYFGTLQNNSKESFEYLS 304
                  L      +    +   P + +F     I+ +    K     LQN S  S   + 
Sbjct: 500  LVHPGDLAFFTDKVQAIIQKQQPFEIEFRIISPIDGSTRYMKADGLVLQNESGLSDRMIG 559

Query: 305  HRNHPSLSAYFDEGEN----LTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDD 359
                 +     D             VD      F     G   Y NP++ ++T +   + 
Sbjct: 560  VLRDRTAKRQADHALRVSEQRYRSLVDHLSAVVFQTDAAGMWTYLNPAWEVITGFSVEES 619

Query: 360  IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
            +              ++D+             +      ++            M      
Sbjct: 620  LG------RFFLDFIVADDQPKSTSQFDYIVESHKEVLKQVIRYIHKDGGYRWMEVFAQV 673

Query: 420  KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG-IILSTN 478
              NQ  E     G   +  D +  +  +     +   I E   +   I +    + L  N
Sbjct: 674  SRNQQLEITGVTGTLTDITDRKQAEEALIESERRFREIAENVDEMFWIRDINSPVFLYMN 733

Query: 479  RAVSKLFGYPVEDILRKP--FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
                   G  VE +   P  F   + +   + +   +   +S + + T     +    + 
Sbjct: 734  PVFELYSGLTVEALYEDPLIFARSIIEEDRAAV---VAAFISNEPKSTFLFRII--HPDG 788

Query: 537  KLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
             L  +   I  L               D++   +++  L  +       ++ K+ F+   
Sbjct: 789  SLRWINARIFLLTDEDGVPVRRLGVATDVTTAIEKEQILEESLAKERALNALKTQFITTA 848

Query: 593  SHEIRTPLTAIIGFSEVIK---NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
            SHE RTPL +II   E+IK   +       N     +   I +    + D++ D L +SK
Sbjct: 849  SHEFRTPLASIISSVELIKYYADLEDRSEANTLINRHVLSISKQVMALTDLIADTLTLSK 908

Query: 650  IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709
            +E GK+ +  EP  +     E I+       +KR  +          +  D + +  +  
Sbjct: 909  LEEGKIQIQVEPTDVVALTEELIAFNFSNREDKR-QVGLDVTGAPVPVSVDKKLMAHVLT 967

Query: 710  NILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
            N+LSNA  F+ +  ++ I          ++ V D G+G+   +L      F +  N+   
Sbjct: 968  NLLSNAFKFSTTSPKVQIRFKRE---SFLISVIDQGIGIPRKDLPHLFGKFFRASNAT-- 1022

Query: 770  RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
              +GTGLGL +    +    G   I ST   GT   I  P++
Sbjct: 1023 HIKGTGLGLSICLEYITLQNGSIDIASTEGVGTTFTIALPIH 1064



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 23/252 (9%), Positives = 66/252 (26%), Gaps = 10/252 (3%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH-IDPNNHIGDLLKRQNTWY 144
            +  DA G    ++       G    + +G    D           +    +++      
Sbjct: 592 VFQTDAAGMWTYLNPAWEVITGFSVEESLGRFFLDFIVADDQPKSTSQFDYIVESHKEVL 651

Query: 145 GKTTLW-PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
            +   +   +G   Y  +++ A    ++  E +G  G   +                +++
Sbjct: 652 KQVIRYIHKDGG--YRWMEVFAQVSRNQQLEITGVTG--TLTDITDRKQAEEALIESERR 707

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL-TEYYAHKDDVLKTEKYPLL 262
           F  + E       +      +F   +P   L     V +L  +       +++ ++  ++
Sbjct: 708 FREIAENVDEMFWIRDINSPVFLYMNPVFELYSGLTVEALYEDPLIFARSIIEEDRAAVV 767

Query: 263 T---SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
               S E            + +          L +        L      + +   ++  
Sbjct: 768 AAFISNEPKSTFLFRIIHPDGSLRWINARIFLLTDEDGVPVRRLGVATDVTTAIEKEQIL 827

Query: 320 NLTPETVDKCPI 331
             +         
Sbjct: 828 EESLAKERALNA 839



 Score = 75.4 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 52/422 (12%), Positives = 114/422 (27%), Gaps = 53/422 (12%)

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
                  V K    +          ++ +               L   +           
Sbjct: 43  ATFHCQRVNKTLAQLLGNSPGELIGKVIDPFVPWIPQAELLSKQLTVLQTGEPWQGRYYY 102

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFE---YLSHRNHPSLSAYFDEGENLTPE-- 324
           PE++ +  ++L +   +     L   + +       +     P L    ++      E  
Sbjct: 103 PEKKRWVQVSLTRLADQVVISFLDVTAYQKPADQPPVHPPARPYLWQDTNQQSGTLAENN 162

Query: 325 -----TVDKCPIPFFVYS---------HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
                 +D  P    +                 +NP  + +T   S   +     + TL 
Sbjct: 163 QLLQTIIDTSPTSLGLLRPIWQEGAIVDFRALISNPQSVSITGLDSDTLLTR--SMLTLF 220

Query: 371 DA-------PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
                     K+ D         ++        S             +  +     +  Q
Sbjct: 221 PQFLPNGVFAKMVDVVLTGEAQRFQMMDELAPGSFWGDFSLVRVGGDILFSVNDITRIKQ 280

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEV--MQLCSILEATSDGIAIINREGIILSTNRAV 481
             E +        +++ R+ +R  E+        +IL+    G+A  + +GII   N A+
Sbjct: 281 VEEELR---TANLELEQRVARRTAEVRQLSALQGAILKYVGLGVAATDTKGIIQLVNPAL 337

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS--------- 532
             + GY  ++++ +  T  L +             L L       +  +           
Sbjct: 338 EAMTGYRADELVGQRTTGSLREPVLHQ-QQLDQLTLELGEAAGQGEEVVARYVARHNFLR 396

Query: 533 ------TKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKES 582
                 TKE +++ +   +  L         Y     DIS  K  +  L  A + ++  +
Sbjct: 397 LENTLLTKEGRVIPVLSTVTGLYDEQNELMGYVDINTDISYRKTVEEALMQAGQRSQLAT 456

Query: 583 SH 584
             
Sbjct: 457 KA 458



 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/269 (9%), Positives = 76/269 (28%), Gaps = 26/269 (9%)

Query: 342 FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR-- 399
              N +   L      + I            P +     +   +                
Sbjct: 48  QRVNKTLAQLLGNSPGELIGKVIDP----FVPWIPQAELLSKQLTVLQTGEPWQGRYYYP 103

Query: 400 -------LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
                  +   +   +  ++   +   +       +          DT      +     
Sbjct: 104 EKKRWVQVSLTRLADQVVISFLDVTAYQKPADQPPVHPPARPYLWQDTNQQSGTLAENNQ 163

Query: 453 QLCSILEATSDGIAIINR---EGIILST-----NRAVSKLFGYPVEDILRKPFTVFLEQN 504
            L +I++ +   + ++     EG I+       N     + G   + +L +       Q 
Sbjct: 164 LLQTIIDTSPTSLGLLRPIWQEGAIVDFRALISNPQSVSITGLDSDTLLTRSMLTLFPQF 223

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564
            P+ +   + +++     Q  + +   +            + ++        +++DI+  
Sbjct: 224 LPNGVFAKMVDVVLTGEAQRFQMMDELAPGS---FWGDFSLVRVGGD--ILFSVNDITRI 278

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVS 593
           KQ + +L  A    E+  + ++  + ++S
Sbjct: 279 KQVEEELRTANLELEQRVARRTAEVRQLS 307



 Score = 38.5 bits (88), Expect = 5.4,   Method: Composition-based stats.
 Identities = 20/166 (12%), Positives = 55/166 (33%), Gaps = 23/166 (13%)

Query: 451 VMQLCSILEATSDGIAIINR---------EGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
              L    E +  G+A +                  N+ +++L G    +++ K    F+
Sbjct: 15  ESLLELWFETSEQGVAFLTPVYLELDQIATFHCQRVNKTLAQLLGNSPGELIGKVIDPFV 74

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDI 561
                + +      +L                +      +++ + +L       ++  D+
Sbjct: 75  PWIPQAELLSKQLTVLQTGEPWQGRYYYPEKKR-----WVQVSLTRLADQ--VVISFLDV 127

Query: 562 SEWKQEKNK---LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
           + +++  ++      A+    ++++ +S  LA    E    L  II
Sbjct: 128 TAYQKPADQPPVHPPARPYLWQDTNQQSGTLA----ENNQLLQTII 169


>gi|196249864|ref|ZP_03148560.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           G11MC16]
 gi|196210740|gb|EDY05503.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           G11MC16]
          Length = 609

 Score =  334 bits (857), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 89/390 (22%), Positives = 161/390 (41%), Gaps = 25/390 (6%)

Query: 426 ENMPQNGIEPEDVDTRINKRKM--EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           + + Q  +   ++  ++ + +   E E  +L S+L   +DG+   +R G ++  N A   
Sbjct: 235 DEIGQLAMTFNNLTKKLQEAQATTEGERRKLESVLTHMTDGVIATDRRGRVILINDAALN 294

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +     E +L       L           L E  SL L  + ++             L +
Sbjct: 295 ILNVSRETVLSSSIVDVLGIADQYTFETLLEEHDSLILDFSTDEELYILRAS-----LSV 349

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
           I K+    +   + +HD++E ++                  +  F+A VSHE+RTPLT +
Sbjct: 350 IQKEGGLINGLIVVLHDVTEQEKI--------------DRERRQFVANVSHELRTPLTTM 395

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
             + E + +  +          +   +      ++ +VNDLL +SK++S    L    ++
Sbjct: 396 KSYLEALADGAWQ--DKEITPRFIQVVQNETERMIRLVNDLLHLSKLDSKDYKLKKTWIN 453

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
                 + I   +       I    +       I  D   + Q+  NI+SNAI ++P GG
Sbjct: 454 FSAYFHKIIDRFE-LTKSDNIRFVRNIPREAIFIEVDEDKITQVLDNIISNAIKYSPQGG 512

Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
            I         +E+I+ + D GVG+   +L K  + F ++  ++  +  GTGLGL +AK 
Sbjct: 513 TITFRVR-ELADEIIISISDEGVGIPKADLAKIFERFYRVDKARSRKLGGTGLGLAIAKE 571

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
           +V A+ G  +  S   KGT I    PL   
Sbjct: 572 LVIAHGGTIWAESKEHKGTTIYFTLPLERE 601


>gi|39995824|ref|NP_951775.1| sensory box histidine kinase/response regulator [Geobacter
           sulfurreducens PCA]
 gi|39982588|gb|AAR34048.1| sensory box histidine kinase/response regulator [Geobacter
           sulfurreducens PCA]
 gi|298504836|gb|ADI83559.1| sensor histidine kinase response receiver, PAS domain-containing
           [Geobacter sulfurreducens KN400]
          Length = 589

 Score =  334 bits (857), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 93/389 (23%), Positives = 181/389 (46%), Gaps = 24/389 (6%)

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
           + R  + ++E+ + +  ++      G A I+  G+I   NR ++ + G    +++   F+
Sbjct: 38  ELRDIRAQLELSLERYANLYHFAPVGYATIDAVGVIADANRTLAGMIGADCREMVGLLFS 97

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS--- 555
            F+ ++  +    +L        R+ +      S +    + +++    L          
Sbjct: 98  DFVHKDDVTSFVSHLARC--TGQREGVTGEFRLSGRNGISVDVQLSSMPLTPPGGRVSCR 155

Query: 556 LTMHDISEWKQEK-------NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
             + DI+  K+++        +L  AK+ AE  S  KS+FLA +SHEIRTP+  ++G  +
Sbjct: 156 TAITDITMIKRKERELNESREELCWAKEAAEDASRAKSEFLANMSHEIRTPINGVLGMLQ 215

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
           ++ +   G               RS + +L +VND+LD S+IE+ KM     P  L   V
Sbjct: 216 LVLDTELG----DEQRHCLEMAKRSADALLRLVNDILDFSRIEARKMVFESRPFDLTACV 271

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIII 727
           + A+ ++   A  K + +      ++P  ++ D   ++Q+ +N++ NA+ FT  G ++ +
Sbjct: 272 NSAVEILAFEARRKGLAVMVRMGPDVPAAVVGDEARLRQVLVNLIGNAVKFTDRG-KVEV 330

Query: 728 STTHTSNEE------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           +      +       + + VRDTG+G+   E E+  + F Q+  +   R  GTGLGL L 
Sbjct: 331 TAARAERQSDPLRTAIRISVRDTGIGIAPQERERLFRVFSQVDGACNRRFGGTGLGLALT 390

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           + +V+A  G   + S   +G+   I  PL
Sbjct: 391 RDIVEAMGGAIDVESQSGQGSTFTITIPL 419



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/361 (11%), Positives = 99/361 (27%), Gaps = 25/361 (6%)

Query: 41  KENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTW-NIDAHGYLKEIS 99
            E P  D+ +Q   +D   + + +       +   +  +       +  IDA G + + +
Sbjct: 18  AEMPEADTEKQQPASDAPSQELRDIRAQLELSLERYANLYHFAPVGYATIDAVGVIADAN 77

Query: 100 EELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGT-NLY 158
             L   IG    +M+G+   D       D  + +  L +      G T  + + G   + 
Sbjct: 78  RTLAGMIGADCREMVGLLFSDFVHKD--DVTSFVSHLARCTGQREGVTGEFRLSGRNGIS 135

Query: 159 VPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVE 218
           V + L+++P+       S       +    +            ++     E  +  S  +
Sbjct: 136 VDVQLSSMPLTPPGGRVSCRTA---ITDITMIKRKERELNESREELCWAKEAAEDASRAK 192

Query: 219 KEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV-LKTEKYPLLTSEESSLPEQEDFHT 277
            E     S +   P   +   +  + +     +             +    + +  DF  
Sbjct: 193 SEFLANMSHEIRTPINGVLGMLQLVLDTELGDEQRHCLEMAKRSADALLRLVNDILDFSR 252

Query: 278 INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS------------LSAYFDEGENLTPET 325
           I   +   +     L      + E L+                   +A   +   L    
Sbjct: 253 IEARKMVFESRPFDLTACVNSAVEILAFEARRKGLAVMVRMGPDVPAAVVGDEARLRQVL 312

Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
           V+           G +          +     D +  A  +S       ++     +   
Sbjct: 313 VNLIGNAVKFTDRGKVEVTAARAERQS-----DPLRTAIRISVRDTGIGIAPQERERLFR 367

Query: 386 L 386
           +
Sbjct: 368 V 368


>gi|322419000|ref|YP_004198223.1| multi-sensor signal transduction histidine kinase [Geobacter sp.
           M18]
 gi|320125387|gb|ADW12947.1| multi-sensor signal transduction histidine kinase [Geobacter sp.
           M18]
          Length = 586

 Score =  334 bits (857), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 89/394 (22%), Positives = 176/394 (44%), Gaps = 26/394 (6%)

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
           I  +  ++  E           ++ ++++  +  E  +L +ILE   +G+ + +   ++ 
Sbjct: 213 IAVKSTDELGELAQVMNDMAARIEQQLDR--ISSERNRLDAILEGMGEGVMVTDEAAVVT 270

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
             N A   +FG   +   ++   +    +  +     L +           +    S  +
Sbjct: 271 LVNPAFCSMFGATADVQGKQLLEITRHPDLYASCREVLAKRQEQR------RELNLSGGK 324

Query: 536 EKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
             L+   + + +           HDIS  K+                  + DF+A VSHE
Sbjct: 325 ATLVHW-VPLLEGVKLRGVVAVFHDISAMKK--------------ADQIRRDFVANVSHE 369

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           +RTP+T I G++E + +         R   +   I    + + D+V DLL +S++ESG++
Sbjct: 370 LRTPVTVIKGYAETLLSGDL-ADDPGRRDRFLGIIQNHADRLSDLVRDLLALSELESGEL 428

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715
            +  + V +++AV +A+ L+   A EK I++    +      +AD   + Q+ +N+L NA
Sbjct: 429 AMQPQKVLIEDAVRQALLLLSPRAEEKGIVMEL-GSCAPVSAMADRGRLDQVLINLLENA 487

Query: 716 IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           I ++  GG+I +       E V + VRD G+G+   +L +  + F ++  ++     GTG
Sbjct: 488 IKYSGQGGRIQVEAA-EEGEMVRVSVRDNGIGIPEKDLPRLFERFYRVDEARSRERGGTG 546

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           LGL + K +V A+ G  ++ ST  KG++     P
Sbjct: 547 LGLSIVKHIVMAHGGSVFVESTVGKGSVFSFTLP 580



 Score = 41.6 bits (96), Expect = 0.51,   Method: Composition-based stats.
 Identities = 30/325 (9%), Positives = 80/325 (24%), Gaps = 23/325 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            D    +  ++       G  A  + G +L +++    +       ++L ++     +  
Sbjct: 263 TDEAAVVTLVNPAFCSMFGATAD-VQGKQLLEITRHPDL--YASCREVLAKRQEQRRE-L 318

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                   L   + L             G +  G+V V    +  +   +      +++ 
Sbjct: 319 NLSGGKATLVHWVPL-----------LEGVKLRGVVAVFHDISAMKKADQIRRDFVANVS 367

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
              +   +V K   +             +++   + + +A +   L  +   L   E   
Sbjct: 368 HELRTPVTVIKGYAETLLSGDLADDPGRRDRFLGIIQNHADRLSDLVRDLLALSELESGE 427

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
           L  Q     I                      E  S     +++    +   L    ++ 
Sbjct: 428 LAMQPQKVLIEDAVRQALLLLSPRAEEKGIVMELGSCAPVSAMA----DRGRLDQVLINL 483

Query: 329 CPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
                 +    G +         + +    D      G+              +      
Sbjct: 484 LENAIKYSGQGGRIQVEAAEEGEMVRVSVRD---NGIGIPEKDLPRLFERFYRVDEARSR 540

Query: 388 RSDRTCIAASARLHTIQWNRENSLA 412
               T +  S   H +  +  +   
Sbjct: 541 ERGGTGLGLSIVKHIVMAHGGSVFV 565


>gi|313205098|ref|YP_004043755.1| pas/pac sensor hybrid histidine kinase [Paludibacter
           propionicigenes WB4]
 gi|312444414|gb|ADQ80770.1| PAS/PAC sensor hybrid histidine kinase [Paludibacter
           propionicigenes WB4]
          Length = 912

 Score =  334 bits (857), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 97/433 (22%), Positives = 184/433 (42%), Gaps = 44/433 (10%)

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL-----------CSILEAT 461
           + F   EK  +  E +  +       + +  +     E+               S++EA+
Sbjct: 205 LVFQTGEKEKRAAELIIADKELVFQTEEKEKRETAAKELEAFSYSLKLASQYSRSLIEAS 264

Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
            D +  IN EG I   N A  K+ G   E+I+   F  +  +   +       ++ +   
Sbjct: 265 RDPLFTINLEGKITDLNNASVKITGMSREEIIGTDFFDYFTEPDKAK--EVYKDVFANGF 322

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH-------- 573
                         + L +  +            +   DI++ K+ + +L+         
Sbjct: 323 VTDFPLTIRDGKLTDVLFNGSVYKDDRGNVQGVVVVARDITDQKKIETQLNEAIVFAEMA 382

Query: 574 -------------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
                        + +IAE     K  FL+ +SHEIRTP+ AI+GF++V+          
Sbjct: 383 TEIAEIAKTKAESSTQIAETAVKAKQQFLSNMSHEIRTPMNAIVGFTKVLLKSELTA--- 439

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
            +  EY + I  SG+ ++ ++ND+LD++K+++GKM     P  ++ ++S  + L +    
Sbjct: 440 -KQKEYLSAIKMSGDALIVLINDILDLAKVDAGKMVFEKIPFKMELSISAMLHLFETKIL 498

Query: 681 EKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTH----TSNE 735
           EK + +   +   IP +L  D   + QI LN++SNA+ FT  G +I +S         + 
Sbjct: 499 EKNLKLVVDYDKTIPDVLVGDPVRLHQIILNLMSNAVKFTGKG-KIYVSVRLLSNNDDSA 557

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            V   ++DTG+G++  ++ K  + F Q  +       GTGLGL + K +V++  G  ++ 
Sbjct: 558 SVQFSIKDTGIGISEEKIGKIFENFQQASSGTSRLYGGTGLGLAIVKQLVESQGGSIHVT 617

Query: 796 STPAKGTLIEIIF 808
           S   +G+      
Sbjct: 618 SEINEGSTFSFTL 630



 Score = 70.4 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/366 (8%), Positives = 83/366 (22%), Gaps = 26/366 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G + ++++      G    K+IG    D     +      +   +  + +      
Sbjct: 26  IDIDGKITDMNQAKVTITGVDRDKLIGSNFFDYFTEPN--KAKAVYKRVFAKGSVKDCPL 83

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
            +      L   +               G     +            L     +      
Sbjct: 84  TFCSVDKKL-TDVLFNGSVYTDAEGNVLGA--LLVARDVEEQKWAIELRNANKELVIANK 140

Query: 209 EIKKGHSSVEKEKYDI------FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
           E+   ++  EK   ++         Q+     R    + +  E      + +K      +
Sbjct: 141 ELLFLNNEKEKRAAELILANKELVFQNKEKEKRAAELIIADKELAYQAGEKMKRAAELKI 200

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
             +E      E            K+     +   K                   +     
Sbjct: 201 ADKELVFQTGEKEKRAAELIIADKELVFQTEEKEKRETAAKELEAFSYSLKLASQYSRS- 259

Query: 323 PETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
              ++    P F +   G +   N + + +T     + I       T         + A 
Sbjct: 260 --LIEASRDPLFTINLEGKITDLNNASVKITGMSREEIIG------TDFFDYFTEPDKAK 311

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
           +      ++            +         + F      +          +  +  D +
Sbjct: 312 EVYKDVFANGFVTDF-----PLTIRDGKLTDVLFNGSVYKDDRGNVQGVVVVARDITDQK 366

Query: 442 INKRKM 447
             + ++
Sbjct: 367 KIETQL 372



 Score = 57.3 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 48/146 (32%), Gaps = 6/146 (4%)

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
           + E     S++EA+ D +  I+ +G I   N+A   + G   + ++   F  +  +   +
Sbjct: 6   KHESQYASSLIEASLDPLITIDIDGKITDMNQAKVTITGVDRDKLIGSNFFDYFTEPNKA 65

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWK 565
                   + +    +          K+   +     +      +     L   D+ E K
Sbjct: 66  K--AVYKRVFAKGSVKDCPLTFCSVDKKLTDVLFNGSVYTDAEGNVLGALLVARDVEEQK 123

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLAR 591
               +L +A K     +     FL  
Sbjct: 124 WA-IELRNANKELVIANKELL-FLNN 147



 Score = 43.1 bits (100), Expect = 0.21,   Method: Composition-based stats.
 Identities = 25/202 (12%), Positives = 45/202 (22%), Gaps = 17/202 (8%)

Query: 35  ETEKSKKENPCHDSF--------EQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFT 86
           E EK   E    D          E+     +  E+ S +  L S+ +       R   FT
Sbjct: 211 EKEKRAAELIIADKELVFQTEEKEKRETAAKELEAFSYSLKLASQYSRSLIEASRDPLFT 270

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK 146
             I+  G + +++    K  G    ++IG    D       D    +   +         
Sbjct: 271 --INLEGKITDLNNASVKITGMSREEIIGTDFFDYFTE--PDKAKEVYKDVFANGFVTDF 326

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                         +               G     +                       
Sbjct: 327 PLTIR---DGKLTDVLFNGSVYKDDRGNVQGV--VVVARDITDQKKIETQLNEAIVFAEM 381

Query: 207 LHEIKKGHSSVEKEKYDIFSQQ 228
             EI +   +  +    I    
Sbjct: 382 ATEIAEIAKTKAESSTQIAETA 403


>gi|296447467|ref|ZP_06889391.1| multi-sensor signal transduction histidine kinase [Methylosinus
           trichosporium OB3b]
 gi|296255005|gb|EFH02108.1| multi-sensor signal transduction histidine kinase [Methylosinus
           trichosporium OB3b]
          Length = 597

 Score =  334 bits (857), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 113/564 (20%), Positives = 213/564 (37%), Gaps = 19/564 (3%)

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
           L     P+       L +     +              L   +                +
Sbjct: 4   LSVTWPPVARDWIERLAQSRRALSRAERARRVAFLAPRLALAAAVLLAAPLWVVIAGAPS 63

Query: 314 YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
             +       +      +    +    L  A  +   L               +      
Sbjct: 64  LGESLLFALAQLPLLSVVALLRFDDLRLAQAASAAGWL-----------IFAGACAAVGG 112

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
             +   A    M        +  +            +LA                     
Sbjct: 113 ASAAALAPFIAMALVEAALALDMALLGAVAAGAGLLTLAAGGALALALAAPLVAYATALA 172

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
                  R++  + +    +L  + EA  + I   +  G +        +++G    D++
Sbjct: 173 AGAIRLARLDAGETDRRAAELALLGEAAGELIIGFDEGGAVSRLVGDRHRIYGLETADLM 232

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL-------GSTKEEKLLSLRIIIK 546
            +     +           +++ ++ +     E           G   E    S     +
Sbjct: 233 GRGLFHRVHVADRPAFLKLVSDTIATNAPACAELRLRIGSAPGAGEYAEPVFNSFEARSR 292

Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
                +     + D++  ++ ++ L+ A++ +   S+ K+ FLA VSHE+RTPL AIIGF
Sbjct: 293 PAGDGAGVICFLADVTAARRAEDMLAEARRESALASAGKTRFLANVSHELRTPLNAIIGF 352

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
           S+++ +++  P    +  EYA  I  SG  +L +VN +LD+SKIESG M +  EP S  E
Sbjct: 353 SDMLASEQLSPADPSKRREYAEIIHNSGQHLLAVVNSILDMSKIESGSMQIVPEPFSAQE 412

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726
              + + ++QL A + RI +   +A+ +P I+ D R+ KQI +N+LSNA+ FTP+ G++ 
Sbjct: 413 LADQCVKMMQLKAEQARIALACDYADGLPEIVGDKRACKQILINLLSNAVKFTPADGRVA 472

Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
           +   +     + + V D+G+G+   +L +   PF Q   +     EGTGLGL + + +V 
Sbjct: 473 VRL-YPDGNRLAIAVSDSGIGIAAADLGRLGDPFFQASAAYDRAYEGTGLGLSVVRGLVG 531

Query: 787 ANMGKFYIFSTPAKGTLIEIIFPL 810
            + G   + S P +GT + +  PL
Sbjct: 532 LHGGAIAVESAPQRGTCVTVRLPL 555


>gi|282933548|ref|ZP_06338918.1| sensor protein kinase WalK [Lactobacillus jensenii 208-1]
 gi|297205338|ref|ZP_06922734.1| sensor histidine kinase [Lactobacillus jensenii JV-V16]
 gi|281302291|gb|EFA94523.1| sensor protein kinase WalK [Lactobacillus jensenii 208-1]
 gi|297149916|gb|EFH30213.1| sensor histidine kinase [Lactobacillus jensenii JV-V16]
          Length = 620

 Score =  334 bits (857), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 91/432 (21%), Positives = 181/432 (41%), Gaps = 37/432 (8%)

Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
             R+  +Q    +            ++  +           V+    +   E E  +L S
Sbjct: 212 EMRMQALQVADGDYSGQV--KIYSNDELGQLAEAFNTLSIRVERSQEQS--ESERRRLDS 267

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           +L   +DG+   +R G ++  N+          +D + KP T  L  +        +   
Sbjct: 268 VLSHMTDGVIATDRHGNVIILNQMALSFLDIKEKDAVSKPITKILGLDDDVSAQELI--- 324

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKK--LPFSSCYSLTMHDISEWKQEKNKLSHA 574
                +Q +       T +E +L     + +    F S     +HD++E ++ +N+    
Sbjct: 325 ---GNQQEMMITVNEGTPDEMILHANFSLIRRVTGFVSGAVCVLHDVTEQQKNENE---- 377

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
                     +  F++ VSHE+RTPLT++  + E + +  +         ++        
Sbjct: 378 ----------QRQFVSNVSHELRTPLTSLRAYIEALNDGAW--KDPEIAPQFLEVTQEET 425

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV--------QLYANEKRILI 686
             ++ ++NDLL +S+++ G + +  E V+ ++ +S  ++          +    +K+  I
Sbjct: 426 ERMIRMINDLLSLSRMDRGVVKMDLEWVNFNDFLSHVLNRFDMIVKNDEKDQTGQKKYSI 485

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
           +    N    +  D   + Q+  NI++NAI ++P GG I +  T + N ++IL + D G+
Sbjct: 486 KRKITNQDLWVEIDTDQMMQVIDNIMNNAIKYSPDGGVITVGLTQSQN-QIILSISDQGL 544

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+   +L K    F ++  ++     GTGLGL +AK +V+A+ GK +  S   KG+   I
Sbjct: 545 GIPKKDLNKIFDRFYRVDKARSREQGGTGLGLAIAKEIVEAHKGKIWADSQEGKGSTFYI 604

Query: 807 IFPLYDTSHPHD 818
             P    S   D
Sbjct: 605 SLPFEPMSEEDD 616


>gi|220906024|ref|YP_002481335.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7425]
 gi|219862635|gb|ACL42974.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7425]
          Length = 816

 Score =  334 bits (857), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 115/703 (16%), Positives = 241/703 (34%), Gaps = 59/703 (8%)

Query: 116 MRLCDVSDILHIDPNNHIGDLLKRQN-TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNRE 174
             L                  L+    TW               +     + P Y  + +
Sbjct: 166 QTLRQSLPNYDPRQRPWYRQALQAGQFTW--GPIYSQFSDRQQAI---AGSQPFYDGSGK 220

Query: 175 FSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL 234
             G     +V+ +          + L K +     + +G + +  +   + +     P  
Sbjct: 221 LLG-----VVNTDLSLAQLTQFLQDLPKSYPEDSFVPRGMALILDQAGKLVAAAHHDPAR 275

Query: 235 RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294
                    ++ +        +       SE      Q     + +  + ++     L  
Sbjct: 276 HTSAPPGHNSDPFLQTTIQQLSSPKAEFESETLKFNFQGQQQFLIVLPFQQQPGLNWLIA 335

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKY 354
                   L        +       +L    +    I  ++     +   N +   +   
Sbjct: 336 LVIPEANALELVQQNLHTTLLTFLFSLCLSILLGLYISRWISYP--ILQLNRAAEAI--A 391

Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
           +S        G    +    + +                                   + 
Sbjct: 392 RSATAHRPTNGFDQPVKVQGIRELE--------------------------------VLA 419

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKR--KMEIEVMQLCSILEATSDGIAIINREG 472
               + A Q            E ++ R+ +R   +     +L  IL A ++ I + + + 
Sbjct: 420 HSFNQMARQLQSAFTSLRTVNEQLEQRVTQRTAALRQAEAELRGILAAMTELILVFDTQE 479

Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
            +L      +     P   +L +P    L       +   + + ++L+   T++   +  
Sbjct: 480 RLLKIVPTSTDQENQPPASLLYQPLPTVLPSPQVEAIRASMRQAIALEQTCTVDYSLVVG 539

Query: 533 TKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
            +E   +     I  +   S       DI+E  + + +L+   +  ++ +  KS F++  
Sbjct: 540 DRE---VWYSACISPINGDS-VIFVARDITEQHRAEEELARTLEKEKQLNELKSRFVSMT 595

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHE RTPLT I+  +E +        G PR +++   I  +   + +++N +L +SK E+
Sbjct: 596 SHEFRTPLTTILSSTE-LLQSHSHKWGEPRDLKHLERIHTAVERMTELLNGVLVLSKAEA 654

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712
           G++  H + ++L++   + +  +Q  A E ++L   S   N  ++  D + ++ I  N+L
Sbjct: 655 GRLEFHPQSLNLEQFCRDLVEDLQSSAPEHQLLF--SLTGNCTQVEMDEKLLQHILPNLL 712

Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           SNAI ++P GG +    T T +  V  +++D G+G+   +L    + F +  N       
Sbjct: 713 SNAIKYSPRGGSVRFEVTCT-STSVCFQIQDQGIGIPAADLPHLFESFHRAKNVGN--IS 769

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
           GTGLGL + K  VD + G   + S    GT   +I PL  T H
Sbjct: 770 GTGLGLAIVKKSVDLHGGTISVTSEVGIGTTFIVILPLQLTVH 812


>gi|260462368|ref|ZP_05810576.1| PAS/PAC sensor signal transduction histidine kinase [Mesorhizobium
           opportunistum WSM2075]
 gi|259031862|gb|EEW33130.1| PAS/PAC sensor signal transduction histidine kinase [Mesorhizobium
           opportunistum WSM2075]
          Length = 773

 Score =  334 bits (857), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 117/507 (23%), Positives = 219/507 (43%), Gaps = 49/507 (9%)

Query: 343 YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT 402
           Y + S   +  Y+  + +   G +  ++      ++  +  +      R       ++  
Sbjct: 274 YWSRSMYDMLGYEPCETMLSFGEVDEIIH----PEDGDLFELANRIVAREIDHID-QVFR 328

Query: 403 IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
           ++      + M         + PE +   GI  +  + R    + E   ++L + +E  +
Sbjct: 329 MRHADGQWVWMRARAQVMDPEAPE-IQLIGIAVDVTEQRHLALRSEAADLRLRTAIENIN 387

Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522
           +   + +    ++  N    +  G    D+   P    +      +       + + +  
Sbjct: 388 ESFVLWDSAQRLIMCNSKYQQDNGLSDRDV--MPGVTRVSLEERMLAFASERRLANTNGP 445

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK-- 580
           Q           + + L +  +  +            DI++ K  + KL  +++      
Sbjct: 446 QG-GATFERQLSDGRWLQVNELKTR---DGGIVSVGSDITQIKLHQEKLVDSERRLMATI 501

Query: 581 ---------------------------------ESSHKSDFLARVSHEIRTPLTAIIGFS 607
                                             +  KS+FLA +SHE+RTPL AIIGFS
Sbjct: 502 HDLSLARRAEEERSRELVDLNRKYMKETERAEAANRAKSEFLANMSHELRTPLNAIIGFS 561

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
           E+++   FGPLG+ RY EYA  I+ SG  +L ++ND+LD+SKIE+G+ +L  E + L   
Sbjct: 562 ELMEQGLFGPLGSSRYEEYATDINSSGKYLLGVINDILDMSKIEAGQFSLDQEQIDLGPL 621

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727
           +SE + +V L A +K I + T  A+ +  + AD R++KQI +N+LSNA+ FT  GG I +
Sbjct: 622 ISETVRVVSLQAAQKAITVETRIADAL-TLFADRRAIKQIVINLLSNAVKFTGQGGHISV 680

Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
                ++  ++L + D G G+    L K  +PF Q+ N       G+GLGL +++++ + 
Sbjct: 681 R-ARNTSGALVLTIEDNGCGIPKEALGKLGRPFEQVQNQFSKNHAGSGLGLAISRSLAEL 739

Query: 788 NMGKFYIFSTPAKGTLIEIIFPLYDTS 814
             G   I ST   GT++ +  P+   +
Sbjct: 740 QGGALKIRSTEGVGTIVSVRIPVKKAT 766


>gi|298247623|ref|ZP_06971428.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297550282|gb|EFH84148.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 775

 Score =  334 bits (857), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 111/755 (14%), Positives = 239/755 (31%), Gaps = 65/755 (8%)

Query: 79  IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK 138
                 F + ID    +   +       G    ++ G      +    +  +     +L+
Sbjct: 61  RVLPGAFFF-IDDTETIMYANASAQAITGATLEELRGTPFWRGAPQ--LVSSELYHAMLQ 117

Query: 139 RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
            +         +    T  ++ + L+            G       H  R     +    
Sbjct: 118 ARQIQASTEVEYCSPVTRTWLHVYLSP--------TVGGLT--LQFHEVRAPAQRKR--- 164

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP--PPHLRMKNKVSSLTEYYAHKDDVLKT 256
             + +   L +       +      I                +V           D  + 
Sbjct: 165 --EDEIRTLVDAIPQLVWIAGPDGYITYNNQRLIDYLAMTLEQVEGDGWMVRVHPDDHQR 222

Query: 257 EKYPLLTSEESSLPEQEDFHTINL---NQYTKKQYFGTLQNNSKESFEYLS----HRNHP 309
            +    T+ ++  P + +    +      +         +N       ++          
Sbjct: 223 VRQAWQTAIQTGTPYEVEHRLQDGTSEAYHWFLVRGVPQRNAQGMILHWVGTCTNIDEQK 282

Query: 310 SLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
                F E +       +  P   + ++S G L Y N  +  +T+    +       L  
Sbjct: 283 RTEQQFKESQESFRLLAETVPQLVWTMWSDGRLDYTNQRYRDVTQ---ANLNLEGDDLWR 339

Query: 369 LLDAPKLSDNNAIKPVMLYR---SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
               P+    +  + +ML      +        RL   +                 ++  
Sbjct: 340 QFVHPE----DIERTLMLRHQVLKNGNIYENEYRLRDGRT--GEYRWYLARALPVRDEAG 393

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
           + +   G   +  D +  +  +     Q  +IL  +S     I     I+  N    ++ 
Sbjct: 394 QIVKWFGTGTDIDDQKRIEEALRQSQEQ-ANILMNSSIIGINIIEGEQIVEANDTFLRMT 452

Query: 486 GYPVEDILRKPFTVFL--EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           GY  ED+                ++      ++         EK  +   K+   L + +
Sbjct: 453 GYTREDLRAGNINWMRITPPEYRALTQQVHQQLTVQQYITPYEKEYVC--KDGSRLPVLV 510

Query: 544 IIKKLPFSSCY-SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
               L          + D S  K+ + +              K  F++  SHE++TPLTA
Sbjct: 511 GAVVLQHFPYQSIAFVLDNSARKELEQR--------------KDAFISMASHELKTPLTA 556

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           +   ++ +  +R             + ++ S   +  ++ +LLD+SKI++G++    E V
Sbjct: 557 LKMQAQ-LARKRLERQSPHEAATALSRVEGSIQQLERLIGELLDVSKIQAGRLEYLQEIV 615

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
            LD  + E    +Q  +    I++R      +  +  D   + Q+ +N++SNAI ++P  
Sbjct: 616 DLDTLLHEVTDTMQQISTTHTIVVR---GATLCSLEGDKDRLGQVFINLISNAIKYSPGA 672

Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
             + I  + +      +RVRD G G+   + +K  + F ++    Q    G G+GL +  
Sbjct: 673 ETVEIDLSASPEA-ATIRVRDHGQGIPQEQRDKIFERFYRVSGPNQKAIPGLGMGLYIVA 731

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
            +V  + G   + S   KG+   +  PL  +  P 
Sbjct: 732 EIVRHHGGTITVESEVGKGSTFSVTLPLKRSLKPE 766



 Score = 43.5 bits (101), Expect = 0.17,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 56/191 (29%), Gaps = 30/191 (15%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           R +      L ++L         I+    I+  N +   + G  +E++   PF     Q 
Sbjct: 47  RDLLPSRETLITMLRVLPGAFFFIDDTETIMYANASAQAITGATLEELRGTPFWRGAPQL 106

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564
             S + H + +   +     +E  +  +      L + +           +L  H++   
Sbjct: 107 VSSELYHAMLQARQIQASTEVEYCSPVTR---TWLHVYLSPT----VGGLTLQFHEVRAP 159

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
            Q K +                        EIRT + AI     +     +    N R I
Sbjct: 160 AQRKRED-----------------------EIRTLVDAIPQLVWIAGPDGYITYNNQRLI 196

Query: 625 EYANYIDRSGN 635
           +Y         
Sbjct: 197 DYLAMTLEQVE 207


>gi|239828687|ref|YP_002951311.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus
           sp. WCH70]
 gi|239808980|gb|ACS26045.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus
           sp. WCH70]
          Length = 608

 Score =  334 bits (857), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 94/387 (24%), Positives = 164/387 (42%), Gaps = 25/387 (6%)

Query: 426 ENMPQNGIEPEDVDTRINKRKM--EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           + + Q  +   ++  ++ + +   E E  +L S+L   +DG+   +R G I+  N A   
Sbjct: 234 DEIGQLAMTFNNLTKKLQEAQATTEGERRKLESVLTHMTDGVIATDRRGRIILINDAALN 293

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +     E +L       L           L E  SL L  + ++             L +
Sbjct: 294 ILNVSRETVLSSSIIDVLGIGDQYTFETLLEERDSLILDFSTDEGLYILRAS-----LSV 348

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
           I K+    +   + +HDI+E ++                  + +F+A VSHE+RTPLT +
Sbjct: 349 IQKESGLINGLIVVLHDITEQEKI--------------DRERREFVANVSHELRTPLTTM 394

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
             + E +    +          +   +      ++ +VNDLL +SK++S    L+   V+
Sbjct: 395 KSYLEALAEGAWQ--DKAIAPRFIEVVQTETERMIRLVNDLLQLSKLDSKDYKLNKSWVN 452

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
             E   + I   +     + I            I  D   + Q+  NI+SNAI ++P GG
Sbjct: 453 FSEYFHKVIDRFE-LTKSENITFVRKIPKEAIFIEIDKDKITQVLDNIISNAIKYSPQGG 511

Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
           +I         +E+I+ V D GVG+   +L K  + F ++  ++  +  GTGLGL +AK 
Sbjct: 512 KITFRVR-ELADEIIVSVSDEGVGIPKGDLAKVFERFYRVDKARSRKLGGTGLGLAIAKE 570

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFPL 810
           +V A+ G  +  S   KGT I    PL
Sbjct: 571 VVIAHGGTIWAESKEHKGTTIFFTLPL 597


>gi|288941103|ref|YP_003443343.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
 gi|288896475|gb|ADC62311.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
          Length = 1370

 Score =  334 bits (857), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 120/760 (15%), Positives = 261/760 (34%), Gaps = 55/760 (7%)

Query: 84  RFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTW 143
           R  WN              P+ +           +  +   L      H+  ++  +   
Sbjct: 121 RLVWNTPDSHTHTS-----PELLQGLRDANQSRHVQRIGPYLDDSGQTHLDYVVPLETDE 175

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFR--GFGIVHVNRVDNDPRALGKRLD 201
                +         +   +     +S++ E   FR  G  ++++  + + P A  +   
Sbjct: 176 EHTPLVVLNANFEDRLCPTVNGQHDFSQSGESFLFRRDGDQVLYLCPLRHQPDAALRFRL 235

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFS-QQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
              S   +  +                      L +   V+    +   K D+ +     
Sbjct: 236 PLTSDRLQAARQVRGEFPLGELTVGYDYRGVLGLGVAQAVAGTDWFVVAKLDLAEIWASV 295

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
            L     +L       ++       +Q        +  +    +     +      E E 
Sbjct: 296 ALEIVLIALVGVLMSISVISGARVLRQRHQ----LALVAATQEAQTERLNALEQLRENEE 351

Query: 321 LTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
           L    +D  P     +         +  +L        + I          D+   +   
Sbjct: 352 LLQILIDCTPASLAMLDREMRYLIVSRQWLQDIGMLEHNLIGQR------YDSVCPNLPE 405

Query: 380 AIKPVMLYRSDRTCIAASARL-----HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
             K           +   A         ++W R           +             ++
Sbjct: 406 HWKAAHARGLAGEVVKFEAEHVECADGRLRWKRLEVHPWRMADDQVGGITLLTEDVTELK 465

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
             ++  R ++++++     L +++ +  D + + + +G+ L+ N    +L+G     I+ 
Sbjct: 466 ETELALRASQQRLQDNRELLRTLIRSIPDLVWLKDTQGVYLTCNARFERLYGASESQIIG 525

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC- 553
           K    F+ +             ++    ++ E+       +     +++I   +  +   
Sbjct: 526 KTDYDFVPRTLADFFRTNDLAAIAAGGPRSNEEELTF-AGDGHRELVQVIKAPVYDTRGT 584

Query: 554 ---YSLTMHDISEWKQEKNKLSHAKKIAEKESSH------------------KSDFLARV 592
                    DI++ K+ + +L+  ++  E+  +                   KS+FLA +
Sbjct: 585 LIGVLGIGRDITQLKRAEAELALHRRHLEELVAERTAELTAARAEAERLARAKSEFLANM 644

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHEIRTP+ A++G + +++        +    E    I  +G  +L I+ND+LD SKIES
Sbjct: 645 SHEIRTPMNAVLGLAYLLERMDLPDAAH----ELTRKIHLAGRNLLGILNDILDFSKIES 700

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNI 711
           G + +   P  LDE +    +++ + A +K + +     + +   +L D   + Q+ +N+
Sbjct: 701 GHIEIERAPFQLDEVLDGLATIMTVTAGDKPLELVIRPPDCLDCTLLGDALRLSQVLINL 760

Query: 712 LSNAIHFTPSGGQ---IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
            SNA+ FT SG     + +     S   V   VRDTG+G+      +  +PF Q   S  
Sbjct: 761 TSNAVKFTASGSVEVGVDLLERTASEIRVRFSVRDTGIGIDEATQSRLFQPFAQADASTT 820

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            R  G+GLGL +++ +V+   G+  + S P +G+      
Sbjct: 821 RRFGGSGLGLVISRRLVELMGGRLELDSRPGEGSTFRFEL 860


>gi|189500623|ref|YP_001960093.1| multi-sensor signal transduction histidine kinase [Chlorobium
           phaeobacteroides BS1]
 gi|189496064|gb|ACE04612.1| multi-sensor signal transduction histidine kinase [Chlorobium
           phaeobacteroides BS1]
          Length = 608

 Score =  334 bits (857), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 94/472 (19%), Positives = 191/472 (40%), Gaps = 25/472 (5%)

Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL---HTIQ 404
            + L + +    +  A  LS +              +               L     ++
Sbjct: 142 AVPLGREEPFAILRFAKPLSDIRLLEAELRKGIEGALFWSLLLSLVFGVLTALFLSRPLR 201

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
              + +  +    +    +   +     +           ++M  +     ++  +  + 
Sbjct: 202 VIADAADNILHGDYASRLEINSDDEIGRLARAVNFMSDEMKRMNQQEEWFKAVFSSIREA 261

Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
           I + +  G I   N A  +LF      ++ K        ++   +   L  + +      
Sbjct: 262 IIVTDANGNIKLGNPAACRLFNLD-CALMIKTGAGHKATDSR--LFELLERMTASGSTVE 318

Query: 525 LEKITLGSTKEEKLLSLR-IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
            E++T+ + + E++L +  + I K          M+DI++    +               
Sbjct: 319 KEEVTVMTDRGERVLQVSAMPIIKRKIPEGTVFVMNDITKLLNLE--------------R 364

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
            + DF++ VSHE+RTPLT+I G++E +         N +   +   I +    +  ++ND
Sbjct: 365 MRRDFVSSVSHELRTPLTSITGYTETLLEGAIDDAENAK--HFLQIILQESERLTALIND 422

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703
           +LD+SKIESG++   F PV L   V + + L      +K I++R     ++P + AD   
Sbjct: 423 VLDLSKIESGRIEYTFAPVCLRAIVDQVVDLFGRAIEKKGIVLRVQIPQDLPYVNADKGY 482

Query: 704 VKQIALNILSNAIHF-TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
           ++ +  N+L NAI +     GQI+IS +   +  V + V+D G+G+   +L +  + F +
Sbjct: 483 LELVLRNLLDNAIKYVAEQNGQIMISASTVDD-MVRVEVKDNGIGIPRKDLGRIFERFYR 541

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           +  ++     GTGLGL + K +V A+ GK  + S    G+    + P+   S
Sbjct: 542 VDKARSRAVSGTGLGLSIVKHIVLAHKGKVEVRSRLNLGSQFSFVIPIAGQS 593


>gi|297531667|ref|YP_003672942.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           C56-T3]
 gi|297254919|gb|ADI28365.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           C56-T3]
          Length = 609

 Score =  334 bits (857), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 92/390 (23%), Positives = 162/390 (41%), Gaps = 25/390 (6%)

Query: 426 ENMPQNGIEPEDVDTRINKRKM--EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           + + Q  +   ++  ++ + +   E E  +L S+L   +DG+   +R G ++  N A   
Sbjct: 235 DEIGQLAMTFNNLTKKLQEAQATTEGERRKLESVLTHMTDGVIATDRRGRVILINDAALN 294

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +     E +L       L           L E  SL L  + ++             L +
Sbjct: 295 ILNVSRETVLSSSIVDVLGIADQYTFETLLEERDSLILDFSTDEELYILRAS-----LSV 349

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
           I K+  F +   + +HDI+E ++                  +  F+A VSHE+RTPLT +
Sbjct: 350 IQKEGGFVNGLIVVLHDITEQEKI--------------DRERRQFVANVSHELRTPLTTM 395

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
             + E + +  +          +   +      ++ +VNDLL +SK++S    L    ++
Sbjct: 396 KSYLEALADGAWQ--DKDIAPRFIQVVQNETERMIRLVNDLLHLSKLDSKDYKLKKTWIN 453

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
                 + I   +       I            I  D   + Q+  NI+SNA+ ++P GG
Sbjct: 454 FSAYFHKVIDRFE-LTKSDNIRFVRKIPREAIFIEVDEDKITQVLDNIISNALKYSPQGG 512

Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
            I       S+ E+I+ V D GVG+   +L K  + F ++  ++  +  GTGLGL +AK 
Sbjct: 513 TITFRVRKLSD-EIIVSVSDEGVGIPKADLAKIFERFYRVDKARSRKLGGTGLGLAIAKE 571

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
           +V A+ G  +  S   KGT I    PL   
Sbjct: 572 VVLAHGGTIWAESKEHKGTTIYFTLPLERE 601


>gi|297585568|ref|YP_003701348.1| multi-sensor signal transduction histidine kinase [Bacillus
           selenitireducens MLS10]
 gi|297144025|gb|ADI00783.1| multi-sensor signal transduction histidine kinase [Bacillus
           selenitireducens MLS10]
          Length = 608

 Score =  334 bits (857), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 82/373 (21%), Positives = 160/373 (42%), Gaps = 22/373 (5%)

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
                 E E  +L S+L   +DG+   +REG I+  NR   +L GY  E+ +       L
Sbjct: 253 EAHATTEGERRKLSSVLTHMTDGVIATDREGQIILMNRRAEELTGYSQEEAIGYDLVGML 312

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDI 561
                  ++        + L        L            +I K+    +     +HD+
Sbjct: 313 NLAHFMKLSDLYNMDDPILLDFEHHDEELILEAN-----FSVIEKENGRKNGLIAVLHDV 367

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           +E ++ + +              + +F+A VSHE+RTPLT++  + E + +       + 
Sbjct: 368 TEQERIEQE--------------RREFVANVSHELRTPLTSMKSYLEALLDGAVN--DSD 411

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
              ++        + ++ +VNDLL +SK+++   ++    V++   +   I   ++   +
Sbjct: 412 VAPQFLQVTSNETDRMIRLVNDLLQLSKMDARDDHMLMAEVNIVNMIHHVIDRFEMSNKQ 471

Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
           + I  R    +    ++ D   + Q+  N++SNA+ ++P GG I I+        +I+ V
Sbjct: 472 ENIQFRRRLPDVPLSVMGDRDKLVQLLDNMVSNAVKYSPEGGVITITLKQEKE-RLIVSV 530

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
           +D GVG+    L      F ++  ++     GTGLGL +AK +V+ + G  ++ S   KG
Sbjct: 531 KDEGVGIPKENLPHVFDRFYRVDKARSRSLGGTGLGLAIAKEIVEVHGGHIWVSSDWGKG 590

Query: 802 TLIEIIFPLYDTS 814
           T      P+   +
Sbjct: 591 TTFFFSLPVNHEA 603



 Score = 42.7 bits (99), Expect = 0.28,   Method: Composition-based stats.
 Identities = 12/113 (10%), Positives = 31/113 (27%), Gaps = 12/113 (10%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY-GKT 147
            D  G +  ++    +  G    + IG           +    ++   +K  + +     
Sbjct: 279 TDREGQIILMNRRAEELTGYSQEEAIG---------YDLVGMLNLAHFMKLSDLYNMDDP 329

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
            L   E  +  + ++     I   N   +G     ++H            +  
Sbjct: 330 ILLDFEHHDEELILEANFSVIEKENGRKNGL--IAVLHDVTEQERIEQERREF 380


>gi|56422008|ref|YP_149326.1| two-component sensor histidine kinase [Geobacillus kaustophilus
           HTA426]
 gi|56381850|dbj|BAD77758.1| two-component sensor histidine kinase [Geobacillus kaustophilus
           HTA426]
          Length = 609

 Score =  334 bits (857), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 91/390 (23%), Positives = 162/390 (41%), Gaps = 25/390 (6%)

Query: 426 ENMPQNGIEPEDVDTRINKRKM--EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           + + Q  +   ++  ++ + +   E E  +L S+L   +DG+   +R G ++  N A   
Sbjct: 235 DEIGQLAMTFNNLTKKLQEAQATTEGERRKLESVLTHMTDGVIATDRRGRVILINDAALN 294

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +     E +L       L           L E  SL L  + ++             L +
Sbjct: 295 ILNVSRETVLSSSIVDVLGIADQYTFETLLEERDSLILDFSTDEELYILRAS-----LSV 349

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
           I K+  F +   + +HDI+E ++                  +  F+A VSHE+RTPLT +
Sbjct: 350 IQKEGGFVNGLIVVLHDITEQEKI--------------DRERRQFVANVSHELRTPLTTM 395

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
             + E + +  +          +   +      ++ +VNDLL +SK++S    L    ++
Sbjct: 396 KSYLEALADGAWQ--DKDIAPRFIQVVQNETERMIRLVNDLLHLSKLDSKDYKLKKTWIN 453

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
                 + I   +       I            I  D   + Q+  NI+SNA+ ++P GG
Sbjct: 454 FSAYFHKVIDRFE-LTKSDNIRFVRKIPREAIFIEVDEDKITQVLDNIISNALKYSPQGG 512

Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
            I       ++ E+I+ V D GVG+   +L K  + F ++  ++  +  GTGLGL +AK 
Sbjct: 513 TITFRVRKLAD-EIIVSVSDEGVGIPKADLAKIFERFYRVDKARSRKLGGTGLGLAIAKE 571

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
           +V A+ G  +  S   KGT I    PL   
Sbjct: 572 VVLAHGGTIWAESKEHKGTTIYFTLPLERE 601


>gi|218676825|ref|YP_002395644.1| hypothetical protein VS_II1065 [Vibrio splendidus LGP32]
 gi|218325093|emb|CAV26933.1| Hypothetical protein VS_II1065 [Vibrio splendidus LGP32]
          Length = 1688

 Score =  334 bits (857), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 98/378 (25%), Positives = 177/378 (46%), Gaps = 15/378 (3%)

Query: 443  NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
                ++    QL ++L ++    +++  E  +   N    +LFG    D+      V   
Sbjct: 950  ATEALKKAQEQLYNMLNSSPIAASVVFEE-KVRYANDTAKRLFGVEGLDLD--SIDVASI 1006

Query: 503  QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH--D 560
             ++ SV +    E++       + +  +    +       +           +      D
Sbjct: 1007 HDSLSVRDDVHKELMLNGK--VVNRELVLRKSDGTRFVALVSYYLFELDGEIATLFWAFD 1064

Query: 561  ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
            ISE K+   +L   K+ A+  S  KS+FLA +SHEIRTP+ AIIG S  +     G + N
Sbjct: 1065 ISEMKRLNEQLEEEKQRADLASQAKSEFLANMSHEIRTPMNAIIGLS-YLA---IGEISN 1120

Query: 621  PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
            P    Y   + RSG+ +L I+ND+LD SKIE+G++ +   P        + I L++  AN
Sbjct: 1121 PVARNYIEKVHRSGHSLLSIINDILDFSKIEAGQLVIDSIPFDPVTTFQDVIELMEPKAN 1180

Query: 681  EKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVI 738
            EK++ +  S    +   ++ D   + Q+ LN++ NAI FT +G   + ++   + +  + 
Sbjct: 1181 EKQLNLSMSIDPELNTPLIGDPLRLFQVILNLVGNAIKFTETGSVSLTVALVESDDNSLT 1240

Query: 739  --LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
              + V DTG+G+++  L K  + F Q  ++   R  GTGLGL +++ +V A  G+  + S
Sbjct: 1241 MKVMVADTGIGISDENLHKLFEAFSQADSTTTRRFGGTGLGLNISQKLVRAMGGQISVGS 1300

Query: 797  TPAKGTLIEIIFPLYDTS 814
               +G+    +  L  +S
Sbjct: 1301 VFGQGSEFSFVLTLSRSS 1318



 Score = 43.1 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 18/157 (11%), Positives = 47/157 (29%), Gaps = 8/157 (5%)

Query: 304  SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYK--SVDDIE 361
                    +    + +      ++  PI   V     + YAN +   L   +   +D I+
Sbjct: 943  QISIANDATEALKKAQEQLYNMLNSSPIAASVVFEEKVRYANDTAKRLFGVEGLDLDSID 1002

Query: 362  IAGGLSTLLDAPKLS------DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
            +A    +L     +            + ++L +SD T   A    +  + + E +     
Sbjct: 1003 VASIHDSLSVRDDVHKELMLNGKVVNRELVLRKSDGTRFVALVSYYLFELDGEIATLFWA 1062

Query: 416  IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
                +  +  E + +     +      ++    +   
Sbjct: 1063 FDISEMKRLNEQLEEEKQRADLASQAKSEFLANMSHE 1099


>gi|253701838|ref|YP_003023027.1| PAS sensor protein [Geobacter sp. M21]
 gi|251776688|gb|ACT19269.1| PAS sensor protein [Geobacter sp. M21]
          Length = 1323

 Score =  334 bits (857), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 102/455 (22%), Positives = 190/455 (41%), Gaps = 53/455 (11%)

Query: 401  HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
              I ++RE    ++    E   +  E       + E +  RI ++ +     +L  I++ 
Sbjct: 651  RRIDYHREREQLLSLQAQELEEKVNER------DQEIMQRRIAEQALRDSERRLADIIDF 704

Query: 461  TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP----------------FTVFLEQN 504
              D   ++N +G +L  NRA  +  G   ED+L K                   + L   
Sbjct: 705  LPDPTFVVNAQGAVLIWNRAAEEFTGAKAEDMLGKDSDECGVPFYGMRRPLLLHMVLTPW 764

Query: 505  TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM---HDI 561
                +      ++    +   E      ++     ++ +              +    DI
Sbjct: 765  RAEQIKPLYVRVVVEGDKIIGESPVRSVSRP-HAYTMGMAAPLYDSEGKVIAVIESVRDI 823

Query: 562  S-----------EWKQEKN-------KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
            +                +        +L  AK+ AE  +  KS FL+ +SHE+RTPL AI
Sbjct: 824  TELKEGEEELKRHRDHLEELVRERTMELLVAKERAEVANQAKSAFLSSMSHELRTPLNAI 883

Query: 604  IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
            +G+++++K Q           +    +   G  +L ++ND+LD+ KIE+ KM +      
Sbjct: 884  LGYAQILKRQDN---LTDTQRQQLEIVRGCGEHLLSLINDVLDMGKIEAQKMEIEALSFD 940

Query: 664  LDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSG 722
            L   + +  S+ ++ A+EK +  R     ++PR +  D R +KQ+ LN+LSNA+ +T  G
Sbjct: 941  LSALLGQVFSIAKVKADEKDLGFRYEELTSLPRAVRGDQRKLKQVLLNLLSNAVKYTRRG 1000

Query: 723  GQIIISTTHT-SNEEVILRVRDTGVGMTNYELEKAMKPFGQ-IPNSQQIRGEGTGLGLPL 780
             ++ +   +  S+   +  + DTG+G+   +L    +PF Q     Q    EGTGLGL +
Sbjct: 1001 -RVTVRVDYELSSGTFVCEITDTGIGIAPDKLNIIFEPFVQLADAGQVR--EGTGLGLSI 1057

Query: 781  AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
             + +V    G+  + S P  G+   +  PL + + 
Sbjct: 1058 TRRLVTLMQGEVAVESEPGFGSTFRVELPLPEVTE 1092



 Score = 44.6 bits (104), Expect = 0.063,   Method: Composition-based stats.
 Identities = 25/190 (13%), Positives = 55/190 (28%), Gaps = 21/190 (11%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
           T+ ++A G +   +    +  G  A  M+G    +     +      +  ++     W  
Sbjct: 709 TFVVNAQGAVLIWNRAAEEFTGAKAEDMLGKDSDECGVPFYGMRRPLLLHMVLT--PWRA 766

Query: 146 KT-----TLWPIEG---------TNLYVPIDLA---ALPIYSRNREFSGFRGFGIVHVNR 188
           +          +EG          ++  P       A P+Y    +         V    
Sbjct: 767 EQIKPLYVRVVVEGDKIIGESPVRSVSRPHAYTMGMAAPLYDSEGKVIAV--IESVRDIT 824

Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA 248
              +     KR       L   +     V KE+ ++ +Q        M +++ +      
Sbjct: 825 ELKEGEEELKRHRDHLEELVRERTMELLVAKERAEVANQAKSAFLSSMSHELRTPLNAIL 884

Query: 249 HKDDVLKTEK 258
               +LK + 
Sbjct: 885 GYAQILKRQD 894


>gi|168703335|ref|ZP_02735612.1| PAS/PAC sensor hybrid histidine kinase [Gemmata obscuriglobus UQM
            2246]
          Length = 1244

 Score =  334 bits (857), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 107/736 (14%), Positives = 207/736 (28%), Gaps = 42/736 (5%)

Query: 95   LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEG 154
               ++       G  A + + M L D+                  + +  G        G
Sbjct: 391  FLAVNPAAVAKYGYTADEFLAMTLRDIRPAEDAARLPGAVAAAGGKLSDSGVWRHRLKSG 450

Query: 155  TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214
              +   I    L    R           +              +  +++     E     
Sbjct: 451  DLIQARIYSHPLEFRGRPARLV------MAQDVTAQLAAEHALRESEEQLRRTLEASATG 504

Query: 215  SSVEKEKYDIFSQQSPP------PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
                       + QS        P          +      +D            +    
Sbjct: 505  LWSWDLTGGTIAWQSDQVPASFHPGGAFDGTAHGVDRVLHPEDRERVWAAARRAVAARDL 564

Query: 269  LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH----RNHPSLSAYFDEGENLTPE 324
               +      N               +       L          +          +  +
Sbjct: 565  FECEFRVVFPNGGGRWVAARGRAAYADDGRPVRMLGTITDVTARKTAELELQRTRAVLQK 624

Query: 325  TVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
             VD  P   F+  + G     NP        ++ D +               +       
Sbjct: 625  LVDHSPALIFMTGADGRYLLFNPRCEAALGVRAADVLGRTPA------EAFPAPLARKIA 678

Query: 384  VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
                 +  T +   +       +     +    P    +     +   G+  +    R  
Sbjct: 679  ERDGHALSTGVPQVSEETVRTPDGPTHFSTVRFPVSGPDGRVIALG--GVAIDITARRRA 736

Query: 444  KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            +  +         + + +   I + +R+G    TN    +  G   +    + +   +  
Sbjct: 737  EDDLRAREELFRLLADESPHIIWVSDRDGRPEYTNARWREYSGRTADQAREQGWAGAVHP 796

Query: 504  NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---YSLTMHD 560
            +          E  +       E        +          K +        +     D
Sbjct: 797  DDREHYRRSWREARARGGEH--EAQVRLKRADGVYRWFLARAKPVGGPGGTRRWFGAATD 854

Query: 561  ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
            I E KQ +  L        +    K  FLA ++HE+R PL  I   + ++     G L +
Sbjct: 855  IEEQKQREASL-------LRADVQKDAFLATLAHELRNPLAPIADVAHLL---GSGGLDD 904

Query: 621  PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
             R  E    +     L+  +V+DL D+S++  G + L  EPV+L + +  A+     +  
Sbjct: 905  GRLREAGALLAGQVRLLTRLVDDLTDLSRVRRGAVELRCEPVALADVIRTAVETSAPHIR 964

Query: 681  EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
                 +     +    +  D   + Q+  N+L+NA  +TP GG + ++       E ++R
Sbjct: 965  AAGHRLSLERRSEPVIVRGDAVRLAQVVSNLLTNAAKYTPPGGNVWLALD-RDGTEAVVR 1023

Query: 741  VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PA 799
            VRD G G+    L +    F Q    Q+    G G+GL LA+ +V+ + G     S  P 
Sbjct: 1024 VRDDGAGIDPALLPRVFDMFVQERRLQEQAPGGLGVGLTLAQQIVELHGGAIDARSAGPG 1083

Query: 800  KGTLIEIIFPLYDTSH 815
            +G    I  PL  T+ 
Sbjct: 1084 RGAEFVIRLPLAATNE 1099



 Score =  110 bits (275), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 37/328 (11%), Positives = 86/328 (26%), Gaps = 8/328 (2%)

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
           L       L     +    E   +       ++  +                 +      
Sbjct: 44  LPAGLADWLRRRGPAGQSVEVPGSEGRVYAARRVTWSAASGPPGAVVVVRDLTDQKRAQQ 103

Query: 314 YFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEI--AGGLSTLL 370
             D         +D+      V    GNL   NP+ + +  Y+ V+      A    T +
Sbjct: 104 AADRTTAYLRAALDRLADGVVVSDAAGNLLDLNPAAVRMHGYERVEQARRNLAALRDTFV 163

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
            AP            L R  R        L   + +      + +               
Sbjct: 164 LAPVGGPPLRFDEWPLSRLLRGEDVGVCELTVRRTDVPVERVVQYSGTRVPGPAGGTELV 223

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490
                +  D R  + ++     +  +  +  +D   + +  G +L  NR      G    
Sbjct: 224 VVTSHDVTDRRRAEDELRASEQRFRAFADHAADAFFLHDDRGTVLDVNRQALASLGCERA 283

Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
           +++      F    TP  + +    + +    +T+   T       ++  + + I+    
Sbjct: 284 ELVGLSPLAFDPDLTPQQLANNSERLNAG---ETIACETRHRHTSGRVFPVELRIRPFTA 340

Query: 551 SSCYSLT--MHDISEWKQEKNKLSHAKK 576
                      D++     +  L  +++
Sbjct: 341 GGRRLAVTLARDVTAQVAARAALRASEE 368



 Score = 88.9 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 45/494 (9%), Positives = 107/494 (21%), Gaps = 48/494 (9%)

Query: 112 KMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSR 171
           +++G                 + D L+R+    G++   P     +Y    +        
Sbjct: 34  ELVGREANACLPAG-------LADWLRRRGP-AGQSVEVPGSEGRVYAARRVTWSAASGP 85

Query: 172 NREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231
                      +V         +    R         +       V     ++       
Sbjct: 86  PGAVV------VVRDLTDQKRAQQAADRTTAYLRAALDRLADGVVVSDAAGNLLDLNPAA 139

Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLN---------- 281
             +    +V       A   D                 P        ++           
Sbjct: 140 VRMHGYERVEQARRNLAALRDTFVLAPVGGPPLRFDEWPLSRLLRGEDVGVCELTVRRTD 199

Query: 282 -------QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF 334
                  QY+  +  G                +           E       D     FF
Sbjct: 200 VPVERVVQYSGTRVPGPAGGTELVVVTSHDVTDRRRAEDELRASEQRFRAFADHAADAFF 259

Query: 335 VYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393
           ++   G +   N   L     +  + +    GLS L   P L       P  L  +    
Sbjct: 260 LHDDRGTVLDVNRQALASLGCERAELV----GLSPLAFDPDL------TPQQLANNSERL 309

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
            A        +    +          +            +  +       +  +      
Sbjct: 310 NAGETIACETRHRHTSGRVFPVELRIRPFTAGGRRLAVTLARDVTAQVAARAALRASEES 369

Query: 454 LCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
              + E     + + + E    L+ N A    +GY  ++ L             + +   
Sbjct: 370 YRLLFECNPLPMWVYHTETLAFLAVNPAAVAKYGYTADEFLAMTLRDIRPAEDAARLPGA 429

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLL--SLRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570
           +        + +   +     K   L+   +     +        +   D++     ++ 
Sbjct: 430 VAAA---GGKLSDSGVWRHRLKSGDLIQARIYSHPLEFRGRPARLVMAQDVTAQLAAEHA 486

Query: 571 LSHAKKIAEKESSH 584
           L  +++   +    
Sbjct: 487 LRESEEQLRRTLEA 500



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 35/382 (9%), Positives = 79/382 (20%), Gaps = 23/382 (6%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTW 143
             +   A G     +      +G  A  ++G    +              G  L      
Sbjct: 632 LIFMTGADGRYLLFNPRCEAALGVRAADVLGRTPAEAFPAPLARKIAERDGHALSTGVPQ 691

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             + T+   +G   +  +     P+   +       G  I              +  ++ 
Sbjct: 692 VSEETVRTPDGPTHFSTVRF---PVSGPDGRVIALGGVAI--DITARRRAEDDLRAREEL 746

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL--RMKNKVSSLTEYYAHKDDVLKTEKYPL 261
           F  L +       V           +       R  ++        A   D  +  +   
Sbjct: 747 FRLLADESPHIIWVSDRDGRPEYTNARWREYSGRTADQAREQGWAGAVHPDDREHYRRSW 806

Query: 262 LTSEESSLPEQE--DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
             +       +        +            +         +             +   
Sbjct: 807 REARARGGEHEAQVRLKRADGVYRWFLARAKPVGGPGGTRR-WFGAATDIEEQKQREASL 865

Query: 320 NLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
                  D     F       L   NP    L     V  +  +GGL         +   
Sbjct: 866 LRA----DVQKDAFLATLAHELR--NP----LAPIADVAHLLGSGGLDDGRLREAGALLA 915

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
               ++    D     +  R   ++   E       I        P            ++
Sbjct: 916 GQVRLLTRLVDDLTDLSRVRRGAVELRCEPVALADVIRTAVETSAPHIR--AAGHRLSLE 973

Query: 440 TRINKRKMEIEVMQLCSILEAT 461
            R     +  + ++L  ++   
Sbjct: 974 RRSEPVIVRGDAVRLAQVVSNL 995



 Score = 39.6 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 15/131 (11%), Positives = 43/131 (32%), Gaps = 11/131 (8%)

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
           ++A +D + +++    +L  N   + L G P  +++ +           + +   L + L
Sbjct: 1   MDAVADAVFVLDHRERVLFANAEAAALAGPPAAELVGR--------EANACLPAGLADWL 52

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLR-IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKK 576
                        G   E ++ + R +            + + D+++ K+ +        
Sbjct: 53  RRRGPAGQSVEVPG--SEGRVYAARRVTWSAASGPPGAVVVVRDLTDQKRAQQAADRTTA 110

Query: 577 IAEKESSHKSD 587
                    +D
Sbjct: 111 YLRAALDRLAD 121


>gi|260426521|ref|ZP_05780500.1| sensory box histidine kinase/response regulator [Citreicella sp.
           SE45]
 gi|260421013|gb|EEX14264.1| sensory box histidine kinase/response regulator [Citreicella sp.
           SE45]
          Length = 858

 Score =  334 bits (857), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 112/535 (20%), Positives = 206/535 (38%), Gaps = 19/535 (3%)

Query: 293 QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFL--- 349
           Q + +     L+            E          +            L    P F    
Sbjct: 61  QADVEVLQFRLAVAEARERPDALPEVRLRFDILYSRM-TTLQNGRLFRLLQTVPDFAAPQ 119

Query: 350 -LLTKYKSVDDIEIAGGLSTLLDA-PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
             ++ +       I G    L    P L++  A+    +       ++  A L   +  R
Sbjct: 120 ERVSAFLDQSIPLIDGPDDALYAKLPGLAEGAAMAGADVRALSLAGLSTFAELSDSRRER 179

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
            + L               ++    +       R     +EI   +L +I+E + D I +
Sbjct: 180 VSGLLGYMAGALVTLFLGLSLLALTMFRLFRVARRRADAIEIAGARLRTIVETSPDAIVV 239

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY----LTEILSLDLRQ 523
            + +G++   N A  ++ GY  +D+  KP                      +       +
Sbjct: 240 TDEDGLVRGFNTAAERMLGYGRDDVFGKPARQLFAPTELPDERTATLFAFADERRRPTPE 299

Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLP-FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES 582
                     ++ +L      I +       Y   + DIS WK+ + +L+ A+  A    
Sbjct: 300 ERRFEISLRDRDGRLFPAEFSIDRAGTDDPLYVAYIRDISRWKEVEEQLTEARDRALAGE 359

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
             KS+FLA +SHE+RTPL  ++G  ++++++        R     +  + SG L+L++VN
Sbjct: 360 RSKSEFLAVMSHEMRTPLNGLLGTLQLLRDEEL----TERQCAMIDRTEASGRLLLELVN 415

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS-FANNIPRILADL 701
           D+LD++K E+GKM     P SL   V   +  V+  A+  R  +           +  D 
Sbjct: 416 DVLDLTKFEAGKMTAEHAPFSLTALVGGVVETVRPIADRYRNALSWRWVGPEGDWVDGDA 475

Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSN--EEVILRVRDTGVGMTNYELEKAMKP 759
           R ++Q+ LN++ NA+ FT  G  + I   +  +    + LRV D+G+G+   +L +  + 
Sbjct: 476 RRLRQVLLNLVGNALKFTRDG-TVEIEAEYLDDVGNALELRVIDSGIGIREEDLARIFRD 534

Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           F  + +S      GTGLGL +A+       G     S P +G+L  +  P+  T+
Sbjct: 535 FETLDSSYAREAGGTGLGLGIAQRFARLMGGSIGAESEPGEGSLFWVRLPMPQTA 589



 Score = 42.3 bits (98), Expect = 0.33,   Method: Composition-based stats.
 Identities = 30/376 (7%), Positives = 78/376 (20%), Gaps = 22/376 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK--------RQ 140
            D  G ++  +    + +G     + G     +     + P+     L            
Sbjct: 240 TDEDGLVRGFNTAAERMLGYGRDDVFGKPARQLFAPTEL-PDERTATLFAFADERRRPTP 298

Query: 141 NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
                + +L   +G        +       R            +       +        
Sbjct: 299 EERRFEISLRDRDGRLFPAEFSI------DRAGT-DDPLYVAYIRDISRWKEVEEQLTEA 351

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
             +       K    +V   +              ++++  +  +               
Sbjct: 352 RDRALAGERSKSEFLAVMSHEMRTPLNGLLGTLQLLRDEELTERQCAMIDRTEASGRLLL 411

Query: 261 LLTSEESSLPEQEDF-----HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
            L ++   L + E       H              T++  +      LS R       + 
Sbjct: 412 ELVNDVLDLTKFEAGKMTAEHAPFSLTALVGGVVETVRPIADRYRNALSWRWVGPEGDWV 471

Query: 316 DEGENLTPE-TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
           D       +  ++           G +         +     +  I+   G+     A  
Sbjct: 472 DGDARRLRQVLLNLVGNALKFTRDGTVEIEAEYLDDVGNALELRVIDSGIGIREEDLARI 531

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
             D   +       +  T +         +    +  A +             MPQ    
Sbjct: 532 FRDFETLDSSYAREAGGTGLGLGIAQRFARLMGGSIGAESEPGEGSLFWVRLPMPQTARG 591

Query: 435 PEDVDTRINKRKMEIE 450
             +        ++   
Sbjct: 592 ATEDVPVPESAELPQR 607


>gi|327193951|gb|EGE60826.1| putative two-component sensor histidine kinase protein [Rhizobium
           etli CNPAF512]
          Length = 769

 Score =  334 bits (857), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 134/688 (19%), Positives = 260/688 (37%), Gaps = 56/688 (8%)

Query: 161 IDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKE 220
           +   A  I+  + + +  +     ++ +   D  A    +            G S V   
Sbjct: 96  VFADAADIFD-SGDITQAQARLARYLPQDRLDDGAFVLLVQASGKVFAATTAGLSHVGSN 154

Query: 221 KYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINL 280
             D F + S     R  ++   +           +            +    E+   +  
Sbjct: 155 VGDFFPEVSA--IRRFGDRAGVIETTIGGVPHYAEITLMGNAGGFVVAATSLEEVGRLWR 212

Query: 281 NQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD---EGENLTPETVDKCPIPFFVYS 337
            +           ++      Y  +          D   E        + +     + + 
Sbjct: 213 EELALNVTLFAGISSILLVILYAYYTQVKRARDADDIFLESNLRVETALSRGRCGLWDFD 272

Query: 338 -HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA 396
                F+ + S   +      D     G  + L+      D+  +  +    +       
Sbjct: 273 FENREFFWSRSMYDMLGLPGSDKTMGFGEAARLMH----PDDGGLYEIARAIAKGHSGQV 328

Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
             ++  ++    + + M        +     M   GI  +  +     ++      +L  
Sbjct: 329 D-QIFRMRHAGGHYVWMRARAQVIRSNSGR-MHLIGIAMDVTEQHRLAQRYAEADQRLAD 386

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
            +E TS+   + ++   ++  N    + +G P   ++       +     +     +   
Sbjct: 387 AIECTSEAFVLWDKNDRLVMCNTHFQQAYGLPDSVLVPGTERSIV---NAAAARPVIERR 443

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH--- 573
           ++        + T     +E+ L +     +            DI+  K+ + +L     
Sbjct: 444 IADADGSGYSRTTEVQLADERWLQINERRTR---DGGRVSVGTDITLMKRHQERLRESER 500

Query: 574 --------------------------------AKKIAEKESSHKSDFLARVSHEIRTPLT 601
                                            K+ AE  +  KS+FLA +SHE+RTPL 
Sbjct: 501 RLMATIGDLSASRQTLELQKAELSTANANYQAEKERAEAANKAKSEFLANMSHELRTPLN 560

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           AI+GFSE+++NQ FGPLG+ +Y EYA  I  SG  +L+++ND+LD+SKIE+G + LH E 
Sbjct: 561 AILGFSEILQNQMFGPLGSLKYDEYARDIHDSGKHLLNVINDILDMSKIEAGHLRLHRER 620

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           + L   + E++    + A EK I+I     + +  ++AD R++KQ+ LN+LSNA+ FT +
Sbjct: 621 IDLVPLIEESLRFTAIPAAEKNIVIEQRICSGM-ALMADRRAMKQVLLNLLSNAVKFTDN 679

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           GG+I + T       V + + DTG+G+    L K  +PF Q+ +       G+GLGL ++
Sbjct: 680 GGRIAVRTRRVD-GAVTVTIADTGIGIPRSALSKIGQPFEQVQSQYAKSKGGSGLGLAIS 738

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +++   + G+  I S  A GT+I +  P
Sbjct: 739 RSLTALHGGRMKIRSREAVGTVISLRIP 766



 Score = 44.2 bits (103), Expect = 0.081,   Method: Composition-based stats.
 Identities = 21/247 (8%), Positives = 55/247 (22%), Gaps = 7/247 (2%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN--HIGDLLKRQNTW 143
            W+ D        S  +   +G        M   + + ++H D      I   + + ++ 
Sbjct: 268 LWDFDFENREFFWSRSMYDMLGLPGSDKT-MGFGEAARLMHPDDGGLYEIARAIAKGHSG 326

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                         YV +   A  I S +         GI       +         D++
Sbjct: 327 QVDQIFRMRHAGGHYVWMRARAQVIRSNSGR---MHLIGIAMDVTEQHRLAQRYAEADQR 383

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL-RMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
            +   E       +  +   +    +       + + V       +  +           
Sbjct: 384 LADAIECTSEAFVLWDKNDRLVMCNTHFQQAYGLPDSVLVPGTERSIVNAAAARPVIERR 443

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
            ++               ++   +      ++  + S                +    L 
Sbjct: 444 IADADGSGYSRTTEVQLADERWLQINERRTRDGGRVSVGTDITLMKRHQERLRESERRLM 503

Query: 323 PETVDKC 329
               D  
Sbjct: 504 ATIGDLS 510


>gi|186687036|ref|YP_001870425.1| putative PAS/PAC sensor protein [Nostoc punctiforme PCC 73102]
 gi|186469660|gb|ACC85457.1| putative PAS/PAC sensor protein [Nostoc punctiforme PCC 73102]
          Length = 1297

 Score =  334 bits (857), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 116/732 (15%), Positives = 231/732 (31%), Gaps = 81/732 (11%)

Query: 160  PIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVE- 218
              D    P+   + +    +   I           A   + +      H   +   +   
Sbjct: 431  WWDSRITPVRDASGQVV--QLVAISRDITDFKQAEAERLQAELVLRSAHVQLESALAAGS 488

Query: 219  ---------------KEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
                              +       P         +          D    +       
Sbjct: 489  VYTWRWNIPADRVVVNAAFAHLFNVDPADATTAGLPIEFFINSIHESDRPRVSAAIQQAI 548

Query: 264  SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG---EN 320
                    +   HT    +           + +  S  +       +     +     + 
Sbjct: 549  ETGEEYTAEYRVHTATGEERWLTARGQVEYDAAGNSIAFPGALADITDHKQAEAAIAADL 608

Query: 321  LTPETVDKCPIPFFVYSHGNLFY------------ANPSFLLLTKYKSVD-DIEIAGGLS 367
               + +    +     +   + Y            A+   + +    + D  +    G  
Sbjct: 609  RDTQLLHGLSVQLTNETDIQVLYDEIMATAIVLTGADAGTVQILDTATQDLVLLATQGFE 668

Query: 368  TLLDAPKLSDNNAIKP---VMLYRSDRTCIAASARLHT---------------------- 402
              L       N +      + L   +RT I                              
Sbjct: 669  PNLTEYFHRVNASSNTSCGIALKNGNRTFIDFDVPESEDPDGSLRIHVEAGYFFGQSTPL 728

Query: 403  IQWNRENSLAMTFIPFEKANQFPENMPQNGI----EPEDVDTRINKRKMEIEVMQLCSIL 458
            I  + +    ++    E        +    +      + ++ R  +  +     +    +
Sbjct: 729  IARSGKPIGMVSTHWQEYRQPSDRELRFLDLLARQAADLIEQRQTQAALRDSENRFRMAI 788

Query: 459  EATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
            E+   G    N     L  +     +FG  P  +   + F   L  N    +   +   L
Sbjct: 789  ESAQLGTWDWNLIANQLIWDEGCKAMFGLLPQAESSIEVFFAGLHPNDRQRLEQAVQWTL 848

Query: 518  SLDLRQTLEKITLGST-KEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLS 572
            +       +        ++     +    +    +      +  T+ +I+E K+ + +  
Sbjct: 849  NPASSGKYDVEYRTIGIEDGVERWIAARGQAYFDAGGNPQRFVGTVLNITEQKRIEAERE 908

Query: 573  H-------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
                    A+  A++ +  K +FLA +SHE+R+PL  I+G+  +++N   G L  PR  E
Sbjct: 909  QLLVREQAARAEADRANRIKDEFLAVLSHELRSPLNPILGWIRLLQN---GKLDLPRQTE 965

Query: 626  YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
                I+R+  L   ++ DLLDIS+I  GK+ L   P+SL   +S AI  V+L A  K I 
Sbjct: 966  ALKTIERNAKLQSQLIEDLLDISRIMQGKLTLTAAPISLTFVISAAIETVRLAAEAKNIQ 1025

Query: 686  IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
            I    +  +  +  D   ++Q+  N+L+NA+ FTP GGQ+I+           +RV DTG
Sbjct: 1026 ILLDLSTTVSYVSGDANRLQQVVWNLLTNAVKFTPRGGQVIVELKQLDQ-LAQIRVSDTG 1084

Query: 746  VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLI 804
             G+    L    + F Q  ++   +  G GLGL + + +V+ + G     S    +G + 
Sbjct: 1085 KGIDPQFLPYVFEYFRQADSTTTRKFGGLGLGLAIVRQIVEMHGGTVKAESLGEDRGAIF 1144

Query: 805  EIIFPLYDTSHP 816
             +  P+   + P
Sbjct: 1145 TVQLPVIQQTIP 1156



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 46/364 (12%), Positives = 97/364 (26%), Gaps = 35/364 (9%)

Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
                   +      P   S  + L      H   L      +   T+  +         
Sbjct: 275 APLLKPLAIESYVATPFFDSNGTPLGLLGVMHGQPLENVHLAESLLTVFADRIAI----- 329

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIA 363
                       E E L    +D        +  +  + Y +P  L L +      I   
Sbjct: 330 ELERQQTEITLRESEELKQRILDSSRDCIKVLTLNSEIVYISPGGLCLLEIDDPTSILNT 389

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
             +       +  D    +  +   +          L T +                 + 
Sbjct: 390 IWVDR----WQGEDYENAQAALAAATLGNIGQFQGYLVTAK---GTPKWWDSRITPVRDA 442

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI---LEATSDGIAIINREGII----LS 476
             + +    I  +  D +  + +     + L S    LE+     ++      I    + 
Sbjct: 443 SGQVVQLVAISRDITDFKQAEAERLQAELVLRSAHVQLESALAAGSVYTWRWNIPADRVV 502

Query: 477 TNRAVSKLFGYPVEDIL--RKPFTVF---LEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
            N A + LF     D      P   F   + ++    ++  + + +      T E     
Sbjct: 503 VNAAFAHLFNVDPADATTAGLPIEFFINSIHESDRPRVSAAIQQAIETGEEYTAEYRVHT 562

Query: 532 STKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
           +T EE+ L+ R  ++     +   +   + DI++ KQ +         A       +  L
Sbjct: 563 ATGEERWLTARGQVEYDAAGNSIAFPGALADITDHKQAE--------AAIAADLRDTQLL 614

Query: 590 ARVS 593
             +S
Sbjct: 615 HGLS 618


>gi|117923740|ref|YP_864357.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117607496|gb|ABK42951.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 893

 Score =  334 bits (856), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 106/436 (24%), Positives = 185/436 (42%), Gaps = 30/436 (6%)

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT------------RINKR 445
             L  I++  + +   + +  E+       +       +++DT            R   +
Sbjct: 174 FHLWVIRYLGQLAHYASSVDLEQPPPDSIVLRAPSHHTDELDTITDALLGMHHKIRTVYQ 233

Query: 446 KMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTV-FLEQ 503
             +     L ++LE+T      +N  +  +   +  +  L GYP E  L        +  
Sbjct: 234 DFKSREESLRTLLESTRAVGWRLNLTKKRLEYISPQIYTLLGYPPESWLDLAVWQSRIHP 293

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-----YSLTM 558
           +        +  IL+     ++         + + + +R +   L              +
Sbjct: 294 DDRLATLTSMERILAQPREHSM--EYRMLAADGRTVWVRDMSSPLSGDKPGTFTHLGGFL 351

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            DIS  K  + +L    + AE  S  KSDFLA +SHEIRTPL AIIG  EV+ +      
Sbjct: 352 LDISAQKDLERRLRTTTERAESASRAKSDFLAVISHEIRTPLNAIIGMGEVLLDDPLTT- 410

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
                  YA    ++ + +LD++ND+LD+SKIE+G+  L   P  L   +   + +  + 
Sbjct: 411 ---EQKHYAMVSQQAAHTLLDLINDVLDLSKIEAGEFQLEHAPYDLVGLIHSVVEVNTIT 467

Query: 679 ANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS---N 734
           AN++ + I  +  + +P ++  DLR V+Q+  N+L NAI FT  G  I + T        
Sbjct: 468 ANQQGLPIECNLPDTLPTLMHGDLRRVRQVLFNLLGNAIKFTEQG-LIRVETERLETPVA 526

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
             + + V+DTG+G+   +       F Q   S   R  G+GLGL ++K +V+   GK  +
Sbjct: 527 SWIRISVKDTGIGIAQEKQSLIFDAFTQSDGSITRRYGGSGLGLTISKRLVEMMGGKIGV 586

Query: 795 FSTPAKGTLIEIIFPL 810
            S   KG+      P+
Sbjct: 587 DSQLGKGSHFFFTLPV 602



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 44/402 (10%), Positives = 106/402 (26%), Gaps = 25/402 (6%)

Query: 87  WNIDAHG-YLKEISEELPKTIGNYAFKMIGMR-LCDVSDILH-IDPNNHIGDLLKRQNTW 143
           W ++     L+ IS ++   +G      + +            +     +  +L +    
Sbjct: 254 WRLNLTKKRLEYISPQIYTLLGYPPESWLDLAVWQSRIHPDDRLATLTSMERILAQPREH 313

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +  +   +G  ++V  D+++     +   F+   GF +        D     +   ++
Sbjct: 314 SMEYRMLAADGRTVWVR-DMSSPLSGDKPGTFTHLGGFLL--DISAQKDLERRLRTTTER 370

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQ--------SPPPHLRMKNKVSSLTEYYAHKDDVLK 255
                  K    +V   +                  P    +   + +++  AH    L 
Sbjct: 371 AESASRAKSDFLAVISHEIRTPLNAIIGMGEVLLDDPLTTEQKHYAMVSQQAAHTLLDLI 430

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE-----YLSHRNHPS 310
            +   L   E      +   + +    ++  +      N      E      L    H  
Sbjct: 431 NDVLDLSKIEAGEFQLEHAPYDLVGLIHSVVEVNTITANQQGLPIECNLPDTLPTLMHGD 490

Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
           L        NL    +              L     S++ ++   +   I      S + 
Sbjct: 491 LRRVRQVLFNLLGNAIKFTEQGLIRVETERLETPVASWIRISVKDTGIGIAQEK-QSLIF 549

Query: 371 DAPKLSDNNAIKP-----VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
           DA   SD +  +      + L  S R       ++       + S     +P        
Sbjct: 550 DAFTQSDGSITRRYGGSGLGLTISKRLVEMMGGKIGVDSQLGKGSHFFFTLPVTARWDVL 609

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
           E +             +          ++ ++LE     + +
Sbjct: 610 EPLYPPPATLLQQQRILLIHSDVENRDRMQTLLEQAGATVIL 651


>gi|298384963|ref|ZP_06994522.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
 gi|298262107|gb|EFI04972.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
          Length = 931

 Score =  334 bits (856), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 102/519 (19%), Positives = 202/519 (38%), Gaps = 29/519 (5%)

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIE 361
                    +   D  E L        P    +Y   G L   N   L +   ++  D+ 
Sbjct: 422 TDSTEAVKTNRALDRSEKLFKSIFANIPAGVEIYDKDGFLIDLNNKDLEIFGVENKQDVI 481

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                        + D    + ++ +R + +   A    H  + +   ++ +     +  
Sbjct: 482 GVNFFENPNVPQHIRDRVRDEDLVDFRLNYSFERAEGYYHPDRRD---TIDIYTKVSKLY 538

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA---IINREGI-ILST 477
           +          I  ++ +      ++         I +    G A   ++NR+G  I   
Sbjct: 539 DNEGNFNGYILISIDNTEQIDAMNRIRDFENFFLLISDYAKVGYAKLNLLNRKGYAIKQW 598

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS-TKEE 536
            + + +    P+ D++       +       +  +  E+   + +    ++ +    K+ 
Sbjct: 599 YKNLGEEEDTPLADVVG--VYRNMHPEDRERIFDFYREVRKGNRKHFQGEMRICRPGKKN 656

Query: 537 KLLSLRIIIK-----KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
           +   +R+ +                  +DI+E K+ + +L  A+  AE     KS FLA 
Sbjct: 657 EWNWIRMNVVVTTYNPEENEVEIIGINYDITELKETEKELILARDKAEMMDRLKSAFLAN 716

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           +SHEIRTPL AI+GFS+++ +            EY   +  + +L+L +++D+LD+SKIE
Sbjct: 717 MSHEIRTPLNAIVGFSDLLVDTE----NIEERREYIQIVKENNDLLLQLISDILDLSKIE 772

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
           +G        V ++    + +  +Q+   E  + +         RI++D   + Q+  N 
Sbjct: 773 AGTFEFTNGDVDVNMLCEDIVRSMQMKVKE-NVELMFDPHLAECRIISDRNRLHQVISNF 831

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEE-VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           ++NAI FT  G    I   +    E +   V+DTGVG+         + F ++ +     
Sbjct: 832 VNNAIKFTSEGS---IRVGYKQKGEELEFYVQDTGVGIDAESQAHIFERFVKLNSFVH-- 886

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             GTGLGL + +++V+   GK  + S P KG+      P
Sbjct: 887 --GTGLGLSICQSIVEQMGGKIGVESEPGKGSRFWFSLP 923



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/157 (14%), Positives = 55/157 (35%), Gaps = 6/157 (3%)

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
           PE     G+  +  +     R ++       SI      G+ I +++G ++  N    ++
Sbjct: 412 PEKDEVVGLFTDSTEAVKTNRALDRSEKLFKSIFANIPAGVEIYDKDGFLIDLNNKDLEI 471

Query: 485 FGYP-VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK-LLSLR 542
           FG    +D++   F                 +++   L  + E+       + +  + + 
Sbjct: 472 FGVENKQDVIGVNFFENPNVPQHIRDRVRDEDLVDFRLNYSFERAEGYYHPDRRDTIDIY 531

Query: 543 IIIKKLPFS----SCYSLTMHDISEWKQEKNKLSHAK 575
             + KL  +    + Y L   D +E     N++   +
Sbjct: 532 TKVSKLYDNEGNFNGYILISIDNTEQIDAMNRIRDFE 568


>gi|226315497|ref|YP_002775393.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC
           100599]
 gi|226098447|dbj|BAH46889.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC
           100599]
          Length = 607

 Score =  334 bits (856), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 87/395 (22%), Positives = 169/395 (42%), Gaps = 30/395 (7%)

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQ--LCSILEATSDGIAIINREGIILSTNRAVS 482
            + + Q G+    +  R+ +  ++ E  +  L  IL   +DG+   NR G I+  NRA  
Sbjct: 231 DDEIGQLGMAFNHMTLRLQEAILQQEEEREKLAGILSNMTDGVIAANRNGQIILFNRAAE 290

Query: 483 KLFGYPVED--ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
            +    + D  + R+     L       M+ Y  E       + L        KEE +L 
Sbjct: 291 DMLQVTMADVLLKRRTLYDLLGLPPEDEMSLYAQE-------EPLIIEMTLPNKEEVILR 343

Query: 541 LRIIIKKLPF--SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
           +     +            + D+++ ++ +                + +F+A VSHE+RT
Sbjct: 344 VTFTPLQHDSKKMGGIIAVVADVTDQQRLE--------------QQRREFVANVSHELRT 389

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
           PLT I  + E + +             +          ++ +VNDLL +S+ +S  + LH
Sbjct: 390 PLTTIKSYVEALLDGAV--EEPELSQRFLKVTSSETERMIRLVNDLLQLSRFDSQGVRLH 447

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718
            +   L+  +  A     +++ ++ + +     + +P +  DL ++ Q+  N+LSNAI +
Sbjct: 448 CKEADLNRLLHYAADRFSMFSEQQEVQLSLDMPSKLPLVYIDLDAINQVLDNLLSNAIKY 507

Query: 719 TPSGGQIIISTTHTS-NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
           TP GG +++          V + + DTG+G+ + +L++  + F ++  ++     GTGLG
Sbjct: 508 TPQGGTVVLMAKENHKQRRVQISITDTGIGIPSRDLKRIFERFYRVDKARSRGQGGTGLG 567

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
           L +A+ +V A+     I S    GT +    P   
Sbjct: 568 LAIARELVQAHGADIEITSEWNVGTTVTFWVPFAQ 602


>gi|86145818|ref|ZP_01064147.1| PAS/PAC sensor hybrid histidine kinase [Vibrio sp. MED222]
 gi|85836517|gb|EAQ54646.1| PAS/PAC sensor hybrid histidine kinase [Vibrio sp. MED222]
          Length = 1656

 Score =  334 bits (856), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 98/378 (25%), Positives = 177/378 (46%), Gaps = 15/378 (3%)

Query: 443  NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
                ++    QL ++L ++    +++  E  +   N    +LFG    D+      V   
Sbjct: 918  ATEALKKAQEQLYNMLNSSPIAASVVFEE-KVRYANDTAKRLFGVEGLDLD--SIDVDSI 974

Query: 503  QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH--D 560
             ++ SV +    E++       + +  +    +       +           +      D
Sbjct: 975  HDSLSVRDDVHKELMLNGK--VVNRELVLRKPDGTRFVALVSYYLFELDGEIATLFWAFD 1032

Query: 561  ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
            ISE K+   +L   K+ A+  S  KS+FLA +SHEIRTP+ AIIG S  +     G + N
Sbjct: 1033 ISEMKRLNEQLEEEKQRADLASQAKSEFLANMSHEIRTPMNAIIGLS-YLA---IGEISN 1088

Query: 621  PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
            P    Y   + RSG+ +L I+ND+LD SKIE+G++ +   P        + I L++  AN
Sbjct: 1089 PVARNYIEKVHRSGHSLLSIINDILDFSKIEAGQLVIDSIPFDPVTTFQDVIELMEPKAN 1148

Query: 681  EKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVI 738
            EK++ +  S    +   ++ D   + Q+ LN++ NAI FT +G   + ++   + +  + 
Sbjct: 1149 EKQLNLSMSIDPELNTPLIGDPLRLFQVILNLVGNAIKFTETGSVSLTVALVESDDNSLT 1208

Query: 739  --LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
              + V DTG+G+++  L K  + F Q  ++   R  GTGLGL +++ +V A  G+  + S
Sbjct: 1209 MKVMVADTGIGISDENLHKLFEAFSQADSTTTRRFGGTGLGLNISQKLVRAMGGQISVGS 1268

Query: 797  TPAKGTLIEIIFPLYDTS 814
               +G+    +  L  +S
Sbjct: 1269 VFGQGSEFSFVLTLPRSS 1286



 Score = 41.6 bits (96), Expect = 0.51,   Method: Composition-based stats.
 Identities = 16/157 (10%), Positives = 45/157 (28%), Gaps = 8/157 (5%)

Query: 304  SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYK--SVDDIE 361
                    +    + +      ++  PI   V     + YAN +   L   +   +D I+
Sbjct: 911  QISIANDATEALKKAQEQLYNMLNSSPIAASVVFEEKVRYANDTAKRLFGVEGLDLDSID 970

Query: 362  IAGGLSTLLDAPKLS------DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
            +     +L     +            + ++L + D T   A    +  + + E +     
Sbjct: 971  VDSIHDSLSVRDDVHKELMLNGKVVNRELVLRKPDGTRFVALVSYYLFELDGEIATLFWA 1030

Query: 416  IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
                +  +  E + +     +      ++    +   
Sbjct: 1031 FDISEMKRLNEQLEEEKQRADLASQAKSEFLANMSHE 1067


>gi|86356937|ref|YP_468829.1| two-component sensor histidine kinase protein [Rhizobium etli CFN
           42]
 gi|86281039|gb|ABC90102.1| probable two-component sensor histidine kinase protein [Rhizobium
           etli CFN 42]
          Length = 767

 Score =  334 bits (856), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 133/652 (20%), Positives = 251/652 (38%), Gaps = 41/652 (6%)

Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA 248
              D  A    +            G S V     D F + S     R  ++   +     
Sbjct: 123 DRLDSGAFVLLVQASGKVFAATTAGLSHVGSNVGDFFPEVSA--IRRFGDRAGVIETTIG 180

Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
                 +            +    E+   +   +           ++      Y  +   
Sbjct: 181 GVPHYAEITLMGNAGGYIVAATSLEEISQVWREELALNVTLFAGISSILLVILYAYYTQV 240

Query: 309 PSLSAYFD---EGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAG 364
                  D   E        + +     + +      F+ + S   +      D     G
Sbjct: 241 KRARDADDIFLESNLRVETALSRGRCGLWDFDFENREFFWSRSMYDMLGLPGSDKTLGFG 300

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
             + L+      D+  +  +    ++        ++  ++    + + M        +  
Sbjct: 301 EAARLMH----PDDGGLYEIARAIANGHSGQVD-QIFRMRHAGGHYVWMRARAQVIRSNS 355

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
              M   GI  +  +     ++      +L   +E TS+   + ++   ++  N    + 
Sbjct: 356 GR-MHLIGIAMDVTEQHRLAQRYAEADQRLADAIECTSEAFVLWDKNDRLVMCNTHFQEA 414

Query: 485 FGYPVEDILRKPFTVFL-----EQNTPSVMNHYLTEILSLDLRQTLEKIT---LGSTKEE 536
           +G P   ++       +            +        + +++   E+        T++ 
Sbjct: 415 YGLPDSVLVPGTERSIVNAAAARPVIERRVADADGSGRTTEVQLADERWLQINERRTRDG 474

Query: 537 KLLSLRIIIKKL--------PFSSCYSLTMHDISEWKQEKN-----------KLSHAKKI 577
             +S+   I  +                T+ D+S  +Q                   K+ 
Sbjct: 475 GRVSVGTDITLMKRHQERLRESERRLMATIGDLSASRQTLELQKAELSTANANYQAEKER 534

Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
           AE  +  KS+FLA +SHE+RTPL AI+GFSE+++NQ FGPLG+ +Y EYA  I  SG  +
Sbjct: 535 AEAANKAKSEFLANMSHELRTPLNAILGFSEILQNQMFGPLGSLKYDEYARDIHDSGKHL 594

Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697
           L+++ND+LD+SKIE+G + LH E + L   + E++    + A EK I+I    ++ +  +
Sbjct: 595 LNVINDILDMSKIEAGHLKLHRERIDLVPLIEESLRFTAIPAAEKNIVIEQRISSGL-TL 653

Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757
            AD R++KQ+ LN+LSNA+ FT  GG+I + T       V + + DTG+G+    L K  
Sbjct: 654 TADRRAMKQVLLNLLSNAVKFTDDGGRIAVRTRRVD-GAVFVTIADTGIGIPRSALSKIG 712

Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +PF Q+ +       G+GLGL +++++   + G+  I S  A GT+I +  P
Sbjct: 713 QPFEQVQSQYAKSKGGSGLGLAISRSLTSLHGGRMKIRSREAVGTVISLRIP 764



 Score = 45.8 bits (107), Expect = 0.032,   Method: Composition-based stats.
 Identities = 23/244 (9%), Positives = 54/244 (22%), Gaps = 14/244 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNY-AFKMIGMRLCDVSDILHIDPNN--HIGDLLKRQNT 142
            W+ D        S  +   +G   + K +G    + + ++H D      I   +   ++
Sbjct: 268 LWDFDFENREFFWSRSMYDMLGLPGSDKTLG--FGEAARLMHPDDGGLYEIARAIANGHS 325

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
                          YV +   A  I S +         GI       +         D+
Sbjct: 326 GQVDQIFRMRHAGGHYVWMRARAQVIRSNSGR---MHLIGIAMDVTEQHRLAQRYAEADQ 382

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
           + +   E       +  +   +    +         +   L +                 
Sbjct: 383 RLADAIECTSEAFVLWDKNDRLVMCNTHF------QEAYGLPDSVLVPGTERSIVNAAAA 436

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
                      D            + +  +          +S     +L     E    +
Sbjct: 437 RPVIERRVADADGSGRTTEVQLADERWLQINERRTRDGGRVSVGTDITLMKRHQERLRES 496

Query: 323 PETV 326
              +
Sbjct: 497 ERRL 500


>gi|284041387|ref|YP_003391317.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
 gi|283820680|gb|ADB42518.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
          Length = 863

 Score =  334 bits (856), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 104/381 (27%), Positives = 167/381 (43%), Gaps = 24/381 (6%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL------FGYPVEDILRKPFT 498
           +++     Q   +LEA    I I+N +G     N+A S L      +    +++    F 
Sbjct: 212 QRLTYSEQQTKKLLEAVPVPIVIVNHQGKFYYANQAASHLVENINEYDPYDDEVSSNRFF 271

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----Y 554
            F +              L  +  Q  +          K   L      +  +S      
Sbjct: 272 RFPDGVPYPREQRPTYRALQGEATQVDDIELRT---NGKRFHLLSSSSPVYDASGNLQYV 328

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
             +  DIS+  Q + +L  A+ +AEK +  K DFLA +SHEIRTPL A++GFSE+++   
Sbjct: 329 ITSSIDISDRVQSQQRLQEARIMAEKAAKLKEDFLANMSHEIRTPLNAMLGFSELLETTN 388

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                +    E+   I  +G  +L IVND+LDISKIE+G + L   P S+    +   ++
Sbjct: 389 L----DADQQEFLRLIRTAGKNLLTIVNDILDISKIEAGMIQLESIPFSIQMLTASIKAM 444

Query: 675 VQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
            Q  A +K + +      N+P + + D   + QI LN+++NAI FT  G  + +      
Sbjct: 445 CQGAATDKGLQLIVEVDPNLPTVFMGDPTRLTQILLNLINNAIKFTKQGS-VTLLIEQGE 503

Query: 734 NEE-----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
            +      V   V+DTG+GM    L    + F Q          GTGLGL + K++ +  
Sbjct: 504 RKTSASIPVRFIVQDTGIGMAREALPTIFERFQQADKFTTRYYGGTGLGLNIVKSLTELQ 563

Query: 789 MGKFYIFSTPAKGTLIEIIFP 809
            G   + ST  KG+   +  P
Sbjct: 564 KGSVSVESTLGKGSRFTVEIP 584


>gi|73538740|ref|YP_299107.1| PAS [Ralstonia eutropha JMP134]
 gi|72122077|gb|AAZ64263.1| PAS [Ralstonia eutropha JMP134]
          Length = 1384

 Score =  334 bits (856), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 123/722 (17%), Positives = 243/722 (33%), Gaps = 60/722 (8%)

Query: 95   LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEG 154
            +  +S+   + +     +     +  V   L ++    I   L+  ++   +      +G
Sbjct: 575  IVHLSDRAGRFLQYVGGEPSHNIIATVRPELRLELRTAIFQALQTNHSVEARRVQLERDG 634

Query: 155  TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214
                  +++ A P++                          +    D+    + E     
Sbjct: 635  R--RFFVNMIARPVHDVEAN------------------ADFVLILFDEVEDSMAEADAAA 674

Query: 215  SSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQED 274
               +++                   VS L        + L+       TS E      E+
Sbjct: 675  VRPQRDPM-----------------VSQLEGELQRTKEQLQATIEQSETSTEELKASNEE 717

Query: 275  FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG--ENLTPETVDKCPIP 332
               IN    +  +   T +   +   E L+  N    S   + G   +     +    I 
Sbjct: 718  LQAINEELRSATEELETSKEELQSINEELTTVNAELKSKVEETGKINDDLQNLITANDIG 777

Query: 333  -FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR 391
              FV  +  +    P    +      D       ++  L+  KLSD+ A     L   +R
Sbjct: 778  TIFVDRNIRIKRYTPRATDVFSIIPSDIGRSLLDITHRLEYDKLSDDAAEAFDSLRLIER 837

Query: 392  TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV 451
               ++  R                                    +    R  + ++    
Sbjct: 838  EVRSSDGR------------WYLARLLPYRTTEDRIDGAVLSFIDITSRRAAEERLRDGE 885

Query: 452  MQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
            +++  + E+T D  I   + +G + S N    ++FGY   ++L +   V           
Sbjct: 886  LRMRIVAESTRDYAIITFDDDGRVTSWNVGAHRIFGYDESEMLGRTADVLFTPEDREQRV 945

Query: 511  HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEK 568
                E+        +E+      K+        ++ +L  +    Y+    D+ E   + 
Sbjct: 946  PA-EEMAQARKYGRVEEDRWHLRKDGTRFRSSGVLSRLDTAGISGYAKIARDLDEVLPQG 1004

Query: 569  NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
               +      + +   + +FLA VSHE++ PL  I   SE +  +      NP       
Sbjct: 1005 APRNDPTWRQDDDHMRRDEFLAVVSHELKHPLNLISASSE-LIARSAEARRNPVIARATA 1063

Query: 629  YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
             I R+      I++DLLD+S++ +GK++L  +P+   E V      V+  A  K + +  
Sbjct: 1064 TIRRTVQNQAQIIDDLLDMSRMRTGKLSLTRDPIDWREVVQRVCDAVKEDAASKNLTLHC 1123

Query: 689  SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748
            + +     I AD+  ++Q+  N++SNA+ FT  G +I ++      +   L V+D+G G+
Sbjct: 1124 NLSGTPVWINADVTRIEQVVWNLISNALKFTREGDEIRVTLE-NEGDRARLVVKDSGHGI 1182

Query: 749  TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEII 807
                L      F Q  N++  +  G G+GL L K +V  + G     S     G    + 
Sbjct: 1183 DAQVLPHIFDMFRQGANARGRQS-GLGIGLSLVKEIVTLHGGTVSASSPGLGHGATFTVE 1241

Query: 808  FP 809
             P
Sbjct: 1242 LP 1243



 Score = 44.6 bits (104), Expect = 0.068,   Method: Composition-based stats.
 Identities = 16/226 (7%), Positives = 51/226 (22%), Gaps = 14/226 (6%)

Query: 90   DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
            D  G +   +    +  G    +M+G     +      +      ++ + +     +   
Sbjct: 904  DDDGRVTSWNVGAHRIFGYDESEMLGRTADVLFTPEDREQRVPAEEMAQARKYGRVEEDR 963

Query: 150  WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
            W +           + +         SG+    I            L +   +      +
Sbjct: 964  WHLRKDGTRFR--SSGVLSRLDTAGISGYAK--IARDLD-----EVLPQGAPRNDPTWRQ 1014

Query: 210  IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
                    E         + P   +   +++ +        +            +   ++
Sbjct: 1015 DDDHMRRDEFLAVVSHELKHPLNLISASSELIA-----RSAEARRNPVIARATATIRRTV 1069

Query: 270  PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
              Q       L+    +    +L  +  +  E +            
Sbjct: 1070 QNQAQIIDDLLDMSRMRTGKLSLTRDPIDWREVVQRVCDAVKEDAA 1115


>gi|32470753|ref|NP_863746.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
 gi|32442898|emb|CAD71417.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
          Length = 993

 Score =  334 bits (856), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 104/364 (28%), Positives = 185/364 (50%), Gaps = 13/364 (3%)

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
            + L+  + G+ ++N +G IL TNR +++L      D++ K       Q           
Sbjct: 186 ENALDTITVGLVLLNSKGRILFTNRRLNQLLSQESADLMGKKIDDLEWQMIADTGAVLPW 245

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA 574
           E    +    +++I        ++L+  +    +     Y +T  DI+  ++ K  L+ A
Sbjct: 246 EEAKQNDDSVMDRILQF-DNNGRMLTFSVNCTPI-AGQGYLVTFEDITLIEENKVALAKA 303

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
           +  AE  ++ KSDFLA +SHEIRTPL A++GF++V++            +++ N I RSG
Sbjct: 304 RDAAENANAAKSDFLANMSHEIRTPLNAVLGFTDVLRRGLVS--NGDEAVDHLNMIHRSG 361

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
             +L+++ND+LD+SKIESG +       SLD+ V++  + +++ A+E+ + ++  F   I
Sbjct: 362 AHLLELINDILDLSKIESGHLQTETIDTSLDDIVTDVANTLKVKADEQNLALKVDFRTAI 421

Query: 695 PR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEE-------VILRVRDTG 745
           PR I +D   ++Q+  N++ NAI FT SG   I+ S   T +         + + + DTG
Sbjct: 422 PRTIQSDPTRLRQVITNLVGNAIKFTESGSVSIVTSLLKTPSNALEGYDPIIRVDIIDTG 481

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +GMT  +  K    F Q  +S   +  GTGLGL +++ + +A  G   + S    G+   
Sbjct: 482 IGMTPDQQAKIFDSFVQADSSTTRKFGGTGLGLSISRRLAEAMGGSLTVHSEVGIGSTFR 541

Query: 806 IIFP 809
           +  P
Sbjct: 542 VELP 545


>gi|218886348|ref|YP_002435669.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218757302|gb|ACL08201.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 1101

 Score =  334 bits (856), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 129/715 (18%), Positives = 232/715 (32%), Gaps = 35/715 (4%)

Query: 109 YAFKMIGM----RLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLA 164
               + G        +++      P+  +   L+   TW               + +  A
Sbjct: 227 SDATLSGRADMLTFRELAARNVPAPSRELS--LEN-LTWDDLARRVAALPGTDAILLLSA 283

Query: 165 ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDI 224
                   R F     F I+                                +  +    
Sbjct: 284 YEDAAGAPRPFEESLAF-ILRHADAPVFHLWEHGLGKGLAGGKVISHFEQGRIAAQLALR 342

Query: 225 FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYT 284
               + P  + +    ++    + H   VL             S           + +  
Sbjct: 343 IMNGASPGDIPVIEGDAANRYIFDH--QVLARFGIAESQLPPGSRILNAPSSPWVVYRRE 400

Query: 285 KKQYFGTLQNNSKESFEYLSHRNHPS-LSAYFDEGENLTPETVDKCPIPFFVYSH-GNLF 342
            +     L      +   + H              E       D+ P+    +   G + 
Sbjct: 401 LRVAAAALVVILALTLFLIFHVIRLRQARTDVRHSEERYRILFDQSPVGIAHFDGEGGII 460

Query: 343 YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT 402
             N  F  +        +    GL+ L       D    + +   R+             
Sbjct: 461 ALNAKFQEIVGAPRHKVL----GLNML------HDVRDPEMLRAVRTAFEGGIGRYEGSY 510

Query: 403 IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
                  +  ++ I          ++    +  +  + R  +  +    M L      T 
Sbjct: 511 TSVAGRKTTLVSCILKCIFAPGGRHLYGLIMAEDLTERRRAEDTLREREMFLLETQRITR 570

Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV-FLEQNTPSVMNHYLTEILSLDL 521
            G          L     V+++   P +       ++ F        +   L  +     
Sbjct: 571 VGGWKAGTRSDRLVWTDEVNRILEVPPDYKPGLAESISFYAPEYRPGVWQMLQTVARDGT 630

Query: 522 RQTLEKITLGSTKEEKLLSLRII-IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
              LE   + S    K   LR +   +         T+ DI+E K  + +L +AK  AE 
Sbjct: 631 PVDLECEVVTSLGARKWTHLRAVGRVEEHGEQLILGTLQDITERKTAEIELLNAKLRAEA 690

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            S  KS+FLA +SHEIRTPL  I+G  +++   R G        +YA+   +SG  +  +
Sbjct: 691 ASKAKSEFLANMSHEIRTPLNGILGMLQLMHTTRLGA----EQADYADIAIQSGRRLARL 746

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILA 699
           ++D+LD+S+IESGK+++   P  L  AV + + L    + +  I +        P  +L 
Sbjct: 747 LSDMLDLSRIESGKLDIRHVPFQLAAAVQQVVELFLPISLQAGIRLDVRMDPTTPETLLG 806

Query: 700 DLRSVKQIALNILSNAIHFTPSGGQIIISTT-----HTSNEEVILRVRDTGVGMTNYELE 754
           D+  V+Q+  N+L N+  FT  GG I ++       H     V+  + DTG G+   +L 
Sbjct: 807 DIVRVQQVLTNLLGNSFKFTRIGG-ITLAVHRLPPPHAPACRVLFTISDTGCGIPEDKLG 865

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +  +PF Q  N  +   +G GLGL + K +V    G+  I S    GT   +  P
Sbjct: 866 ELFEPFTQASNGMRRSHQGAGLGLSICKRLVHLMGGEITIESEEGAGTTACVSLP 920


>gi|124382909|ref|YP_001025091.1| sensory box histidine kinase/response regulator [Burkholderia
           mallei NCTC 10229]
 gi|254205387|ref|ZP_04911740.1| sensory box histidine kinase/response regulator [Burkholderia
           mallei JHU]
 gi|147754973|gb|EDK62037.1| sensory box histidine kinase/response regulator [Burkholderia
           mallei JHU]
 gi|261827034|gb|ABM99494.2| sensory box histidine kinase/response regulator [Burkholderia
           mallei NCTC 10229]
          Length = 772

 Score =  334 bits (856), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 104/519 (20%), Positives = 181/519 (34%), Gaps = 27/519 (5%)

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEI 362
           S R + +L        +     +        V   HG L Y NPS   L        +  
Sbjct: 112 SRRANDALRRREAGARHYYETLLQSLTQGVVVSDRHGMLTYMNPSAAALIGC-DATAVRG 170

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
                                +          +       +  +    + +        +
Sbjct: 171 LPFRDVYRAYDGRGARVRASALEHVLRSGRSASVEGH--WLAPHDGQRVPIAEAASPLVD 228

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
              +      I  +    R      ++    L  ++EA+ D I  +     I S N A  
Sbjct: 229 SAGDMTGAVLIVRDISIERERSAASQM----LRRLVEASPDAIVGVGSNRRITSWNPAAR 284

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
           ++FGY           + +           L E +            L   ++   +   
Sbjct: 285 RMFGYDEHAARGCDVAMLIAPRWLRNHP--LPESVPDMREPIENVDVLCVRQDGGRMRAT 342

Query: 543 IIIKKLPFSSCYSL----TMHDISEWKQEKNK-------LSHAKKIAEKESSHKSDFLAR 591
           +    +       +    T+ D  E ++ + +          A++ A+  +  K + LA 
Sbjct: 343 MSASPVFDERDACIALSLTLRDTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLAT 402

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           VSHE+RTPL  I G+ EV++N   G L      +  + IDRS   +  +V D+LD S + 
Sbjct: 403 VSHELRTPLNVIYGWIEVLRNPVDGAL----QQQAIDAIDRSARSLSRMVGDILDASSLA 458

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
           +GK+ L   PV L   V++    +   A    I +    A     +  D   ++Q+  N+
Sbjct: 459 TGKLRLDAMPVDLVRIVNDVTGALGAAAQADGIALSVECALATCIVSGDGERLRQMLSNL 518

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           LSNA  FTP GG++ +S       +  L V DTG G++   L    + F +   +     
Sbjct: 519 LSNAFKFTPRGGRVTVSLERHD-AQAKLTVADTGHGISPEFLPHVFEAFRRAEGAPASPR 577

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFP 809
            G GLGL + + + + + GK    S    +GT   I  P
Sbjct: 578 RGLGLGLSIVRHIAELHGGKVEAASAGKNRGTTFAITLP 616



 Score = 65.4 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/225 (12%), Positives = 54/225 (24%), Gaps = 5/225 (2%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK---RQNTWYGK 146
           D HG L  ++      IG  A  + G+   DV               L+   R       
Sbjct: 145 DRHGMLTYMNPSAAALIGCDATAVRGLPFRDVYRAYDGRGARVRASALEHVLRSGRSASV 204

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
              W        VPI  AA P+     + +G     IV    ++ +  A  + L +    
Sbjct: 205 EGHWLAPHDGQRVPIAEAASPLVDSAGDMTGA--VLIVRDISIERERSAASQMLRRLVEA 262

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
             +   G  S  +      + +    +     +   +    A +          +    E
Sbjct: 263 SPDAIVGVGSNRRITSWNPAARRMFGYDEHAARGCDVAMLIAPRWLRNHPLPESVPDMRE 322

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
                       +  +         + +                 
Sbjct: 323 PIENVDVLCVRQDGGRMRATMSASPVFDERDACIALSLTLRDTGE 367


>gi|163848197|ref|YP_001636241.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222526102|ref|YP_002570573.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp.
            Y-400-fl]
 gi|163669486|gb|ABY35852.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222449981|gb|ACM54247.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp.
            Y-400-fl]
          Length = 2782

 Score =  334 bits (856), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 109/592 (18%), Positives = 216/592 (36%), Gaps = 35/592 (5%)

Query: 236  MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN 295
              +  + + E  A  +   +         E  +    E    ++LN   ++    T +N 
Sbjct: 2205 AADLDARVRERTAELEQATRLLSEEKERLEAVNRITLELTTQLDLNLIIQRALELTSENL 2264

Query: 296  SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYK 355
              E    +                      +   P+ F   + G           + ++ 
Sbjct: 2265 GVERGSLMLRDPVTGELFCRAVLHGRGRAEIANIPLRFADGTEGL-------AGWIIQHL 2317

Query: 356  SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW--NRENSLAM 413
               +I         L  P  +D+      +  ++    I       T +   +      +
Sbjct: 2318 EAVNIPDVKHDPRWLKEPGRADDVQSVAGVPLQTSDNAIGVLILSSTQRHYFSASQMNLL 2377

Query: 414  TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
              +    A         N I    +   +   +   E  +  ++  + ++G+ +++    
Sbjct: 2378 GTVASVIAAAVNNAQLYNFINDLALRNAVLLEEQREETSKSAAVFRSMTEGVIVLDTRQQ 2437

Query: 474  ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY--------LTEILSLDLRQTL 525
            I   N A  ++   P   +L +P                        +  +  +   Q +
Sbjct: 2438 ITLFNPAAEQVLDIPASQVLNQPLQQLASIGDDETSRRRAQTIYNGIVQGLRRMRESQGI 2497

Query: 526  EKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
               ++  T   +++++ I   + P        + + DI+                 +   
Sbjct: 2498 FSTSVDLTDPSQVIAVNIAPVRGPDGQHYGEVVVLRDITR--------------EIEADK 2543

Query: 584  HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
             K  F++ VSHE+RTPLTAI G+ +V+       L  P  I Y   I  + N +  ++ D
Sbjct: 2544 EKRQFISDVSHELRTPLTAIKGYVDVLLLTASLNLT-PDQINYLTIIKNNTNRLRALIED 2602

Query: 644  LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703
            +L+ S+ +S K  L F  V +   + E +  ++L    K + +R      +P + AD + 
Sbjct: 2603 ILEFSRPDSKK-KLTFTQVEIPAVIDEVVQSLRLEYERKGMTVRIDAPPTLPPVTADQKR 2661

Query: 704  VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
            V QI  N+ SNA+ +T  GG I +         + + V DTGVGM+  +L+K  +PF + 
Sbjct: 2662 VSQIIFNLFSNAVKYTYEGGSITVRAFLNRANMMQIEVEDTGVGMSPEQLKKLFRPFYRA 2721

Query: 764  PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
             N  +    GTGLGL +AK +V+ + G+ ++ S   KG+      PL   ++
Sbjct: 2722 DNPLRDIAGGTGLGLSIAKQLVEMHGGEIWVTSELGKGSTFAFAIPLQQETN 2773


>gi|284036575|ref|YP_003386505.1| PAS/PAC sensor signal transduction histidine kinase [Spirosoma
            linguale DSM 74]
 gi|283815868|gb|ADB37706.1| PAS/PAC sensor signal transduction histidine kinase [Spirosoma
            linguale DSM 74]
          Length = 1043

 Score =  334 bits (856), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 113/762 (14%), Positives = 246/762 (32%), Gaps = 58/762 (7%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMR-----------------LCDVSDILHIDPNN 131
             D+ G ++ ++  L    G  A +++G R                 L  + D   +   N
Sbjct: 302  TDSQGVIQLVNPALETLTGYQADELVGKRTPGFLREPSVHHRQVDQLRPLLDDQSLTDEN 361

Query: 132  HIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN 191
             +    K+      +  +    G  + V   ++ L  Y       GF    IV       
Sbjct: 362  TVMAYAKQYGFIRRENLIQTKSGQIIPVLSTVSGL--YDDQNTLLGF--VDIVTDISSLK 417

Query: 192  DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT-----EY 246
                   +   +     +  K          D               +   L        
Sbjct: 418  SIEEALTKTQHRTDLAIKAGKLGIWEWNLLTDELILDEHFYAYFSFFEKGCLKHINDFLS 477

Query: 247  YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ--NNSKESFEYLS 304
              HK D+    +      +  S+ +          Q T       ++           + 
Sbjct: 478  LIHKADLALVNQTIESVRQGKSIADLSFRVYKPDTQTTYYLKVDGIRFEGEYDSVRRMIG 537

Query: 305  HRNHPSLSAYFD----EGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDD 359
                 +     +    E E      VD      F     G   Y NP++  +T +   + 
Sbjct: 538  VVIDQTSQRQAEHSLQESELRYRSLVDNLKEAVFQTDTFGMWTYLNPAWEEITGFSIAES 597

Query: 360  IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
            +     L  +    +  +    +P+M  +      +                 +      
Sbjct: 598  L-GTSFLEYVFPEDQKRNLELFEPLMARQK-----SYCRHEIRYVSKAGGYRWIEVFARV 651

Query: 420  KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTN 478
              N+  E     G   +  + ++ +  +     +  +I E   +   I + E   +L  N
Sbjct: 652  TVNEDNELTGTTGTLTDITERKLAEEALRESEQRFRAIAENLDELFWIRDSENLDVLYMN 711

Query: 479  RAVSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
             A  +L G  + ++ +  +     + +    ++   +      +     +          
Sbjct: 712  SAFERLSGISMAELYQNPRALLSIVPEEDQPLL---IQAFRQPEPGTDFQFRARHQDGSL 768

Query: 537  KLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
            +   +R+   +  +   S       DI+   + K  LS + +     ++ KS F++  SH
Sbjct: 769  RYFHVRLFTMERGYGKQSGRIGVGTDITNVVENKRLLSESLEKERSLNTLKSQFISIASH 828

Query: 595  EIRTPLTAIIGFSEVIK---NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
            + RTPLT+I    ++I+   ++      N    +Y   I +    + +++ D L +SK+E
Sbjct: 829  QFRTPLTSIQSSIDLIQYYISKNNEFPFNNIIQKYTGQISQQITFLEELIMDTLTLSKLE 888

Query: 652  SGKMNLHFEPVSLDEAVSEA-ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710
             GK+ ++ +   L   + +  +S     A+ +   ++ +       +  D + +  + +N
Sbjct: 889  EGKVQVNLQKTDLKTFIQDVIVSTFSNQADGR--SVQQAMIGEPMAVWVDTKLMSHVLIN 946

Query: 711  ILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
            +L+NA  F+ +   + +  T      V + V D G+G+  +EL      F +   S   +
Sbjct: 947  LLANAFKFSSADPLLTVRYTP---GSVFISVSDKGIGVPAHELPNLFSKFFRA--SNARQ 1001

Query: 771  GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
              GTGLGL + +  +    G   + S    GT   I  P+ +
Sbjct: 1002 INGTGLGLAICREYMHLQQGHIEVNSEVGVGTTFTITIPIQN 1043



 Score = 81.2 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 54/444 (12%), Positives = 121/444 (27%), Gaps = 50/444 (11%)

Query: 175 FSGFR-GFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH 233
           F G R G   +   R         +R++ +F+ L E      +       +   ++    
Sbjct: 9   FEGSRYGVAFLRPVRQQKSTVFRCERVNYRFTQLLEQTSEELTRTGNALVLPFDKADDLS 68

Query: 234 LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293
            +++   + L +    + +    +    ++     +  Q        ++ +   ++  + 
Sbjct: 69  GQLE---AVLKDGDPRQGNYYLHKANRWVSLTILRMGRQLVLQVSESDKVSIADHYHGIG 125

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF----VYSHG-----NLFYA 344
                                  E   L    VD  P        +Y  G          
Sbjct: 126 GPVNA-----------DQPNDLIELNQLLQAVVDSSPAGLSLLRPIYEDGQITDFRYLIT 174

Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
           NP   L+T       +E    L TL      +   A    ++  +          +   Q
Sbjct: 175 NPQNSLITGCSQQTMLEK--SLLTLFPHLLTNGIFAKLVDVVCTNVTLHFEMLDDIRNSQ 232

Query: 405 WNRENSL------AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458
                +L       +  I      +  E   +      +         +        +IL
Sbjct: 233 RWGSFTLLRVGGDVLFTIQDITRLKRTEADLRQANLNLEQRIAERTADLRQLSAFQQAIL 292

Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR-KPFTVFLEQNTPSVMNHYLTEIL 517
                GI+  + +G+I   N A+  L GY  ++++  +      E +        L  +L
Sbjct: 293 TYAGLGISATDSQGVIQLVNPALETLTGYQADELVGKRTPGFLREPSVHHRQVDQLRPLL 352

Query: 518 SL-------------DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHD 560
                               + +  L  TK  +++ +   +  L         +   + D
Sbjct: 353 DDQSLTDENTVMAYAKQYGFIRRENLIQTKSGQIIPVLSTVSGLYDDQNTLLGFVDIVTD 412

Query: 561 ISEWKQEKNKLSHAKKIAEKESSH 584
           IS  K  +  L+  +   +     
Sbjct: 413 ISSLKSIEEALTKTQHRTDLAIKA 436



 Score = 67.7 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 23/252 (9%), Positives = 68/252 (26%), Gaps = 15/252 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD-LLKRQNTWY 144
            +  D  G    ++    +  G    + +G    +         N  + + L+ RQ ++ 
Sbjct: 570 VFQTDTFGMWTYLNPAWEEITGFSIAESLGTSFLEYVFPEDQKRNLELFEPLMARQKSYC 629

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
                + +     Y  I++ A    + + E +     G +             +  +++F
Sbjct: 630 RHEIRY-VSKAGGYRWIEVFARVTVNEDNELT--GTTGTLTDITERKLAEEALRESEQRF 686

Query: 205 SHLHEIKKGHSSVEK-----------EKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253
             + E       +                 +        +   +  +S + E        
Sbjct: 687 RAIAENLDELFWIRDSENLDVLYMNSAFERLSGISMAELYQNPRALLSIVPEEDQPLLIQ 746

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
              +  P    +  +  +       ++  +T ++ +G          +  +   +  L +
Sbjct: 747 AFRQPEPGTDFQFRARHQDGSLRYFHVRLFTMERGYGKQSGRIGVGTDITNVVENKRLLS 806

Query: 314 YFDEGENLTPET 325
              E E      
Sbjct: 807 ESLEKERSLNTL 818



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/271 (13%), Positives = 81/271 (29%), Gaps = 33/271 (12%)

Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399
                N  F  L +  S +       L    D       +    +     D      +  
Sbjct: 31  RCERVNYRFTQLLEQTSEELTRTGNALVLPFDKAD----DLSGQLEAVLKDGDPRQGNYY 86

Query: 400 LH-TIQW------NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
           LH   +W           L +     +K +         G    D    + +        
Sbjct: 87  LHKANRWVSLTILRMGRQLVLQVSESDKVSIADHYHGIGGPVNADQPNDLIELN-----Q 141

Query: 453 QLCSILEATSDGIAIINR---EGIILST-----NRAVSKLFGYPVEDILRKPFTVFLEQN 504
            L ++++++  G++++     +G I        N   S + G   + +L K         
Sbjct: 142 LLQAVVDSSPAGLSLLRPIYEDGQITDFRYLITNPQNSLITGCSQQTMLEKSLLTLFPHL 201

Query: 505 TPSVMNHYLTEILSLDLRQTLEK--ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
             + +   L +++  ++    E       S +      LR+             T+ DI+
Sbjct: 202 LTNGIFAKLVDVVCTNVTLHFEMLDDIRNSQRWGSFTLLRV-------GGDVLFTIQDIT 254

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
             K+ +  L  A    E+  + ++  L ++S
Sbjct: 255 RLKRTEADLRQANLNLEQRIAERTADLRQLS 285


>gi|253699901|ref|YP_003021090.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           M21]
 gi|251774751|gb|ACT17332.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           M21]
          Length = 584

 Score =  334 bits (856), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 95/415 (22%), Positives = 174/415 (41%), Gaps = 26/415 (6%)

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM-EIEVMQLCSIL 458
           L  +    +      F          E      +  E       + ++   E  QL +IL
Sbjct: 194 LRRLAIGAQRIGRGEFGARIAVQSQDEMGELAQVMNEMSGRIERQLELISSEKNQLDAIL 253

Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
               +G+ + +R+ ++   N A   +F     ++  +P            +     E LS
Sbjct: 254 NGMGEGVMVTDRDAVVTLVNHAFCSMFA-TGAEVQGRPLLEITRHPD---LYAACREALS 309

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISEWKQEKNKLSHAKKI 577
               +  E    G     K + +  +               HDIS +K+ +         
Sbjct: 310 ARQERHQEIALAG----GKTVLVHWVPLSEGDGLQGAVAVFHDISAFKRVE--------- 356

Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
                  + DF+A VSHE+RTP+T I G++E + +         R   +   I    + +
Sbjct: 357 -----KIRRDFVANVSHELRTPVTVIKGYAETLLSGALAA-DPQRAERFLLIIQNHADRL 410

Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697
             +V DLL +S++ESG+M +  +PV+LDEA+ +A+ LV     EK + +          +
Sbjct: 411 SGLVRDLLTLSELESGEMGMQLKPVALDEAIRQALLLVGQRGEEKGVQLEQPAGEAGLTV 470

Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757
            AD   ++Q+ +N+L NAI ++ +G  + + T     + V + VRD+G+G+   +L +  
Sbjct: 471 QADRGRLEQVLINLLDNAIKYSETGKSVGVETARE-GDLVRVSVRDSGIGIPEKDLPRLF 529

Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
           + F ++  ++     GTGLGL + K +V A+ G   + S   KG++     PL  
Sbjct: 530 ERFYRVDEARSRDNGGTGLGLSIVKHIVQAHGGTLDVKSEQGKGSVFSFTLPLAR 584



 Score = 46.2 bits (108), Expect = 0.025,   Method: Composition-based stats.
 Identities = 28/265 (10%), Positives = 69/265 (26%), Gaps = 25/265 (9%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            D    +  ++            ++ G  L +++    +       + L  +     +  
Sbjct: 263 TDRDAVVTLVNHAFCSMF-ATGAEVQGRPLLEITRHPDL--YAACREALSARQ-ERHQEI 318

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRG-FGIVHVNRVDNDPRALGKRLDKKFSHL 207
                 T L   + L+         E  G +G   + H          + +  D   +  
Sbjct: 319 ALAGGKTVLVHWVPLS---------EGDGLQGAVAVFHDISAFKRVEKIRR--DFVANVS 367

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
           HE++   + ++     + S        R   +   + + +A +   L  +   L   E  
Sbjct: 368 HELRTPVTVIKGYAETLLSGALAADPQRA-ERFLLIIQNHADRLSGLVRDLLTLSELESG 426

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
            +  Q     ++          G          E  +     ++ A     E +    +D
Sbjct: 427 EMGMQLKPVALDEAIRQALLLVGQRGEEKGVQLEQPAGEAGLTVQADRGRLEQVLINLLD 486

Query: 328 KC--------PIPFFVYSHGNLFYA 344
                      +       G+L   
Sbjct: 487 NAIKYSETGKSVGVETAREGDLVRV 511


>gi|171687465|ref|XP_001908673.1| hypothetical protein [Podospora anserina S mat+]
 gi|170943694|emb|CAP69346.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1417

 Score =  334 bits (856), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 115/647 (17%), Positives = 213/647 (32%), Gaps = 54/647 (8%)

Query: 199  RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
             L  + +    ++        + +D+         +      +   +   +   VL   +
Sbjct: 430  TLPNRAARNLFVRNADLDKSADGFDLLPNW-----MVWDQDFTKQLDPSEYPIAVLLRTE 484

Query: 259  YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
             P +        E       ++            +  +         R H  L+      
Sbjct: 485  KPFVGLRIGMRDEHGKSLVFDVEGVAINDENTG-EFLAGVVTCRDVTRLHEELNQIKAAD 543

Query: 319  ENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
            E       D  P   +     G   + N  +   T     D              P   D
Sbjct: 544  EERFGLICDTMPQLVWTATPDGQHDFYNSRWYHYTGLSEEDSFGEG------WSKPFHPD 597

Query: 378  NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
            +          S  T             + E    +      +  Q  +     G   + 
Sbjct: 598  DMVEAAKRWKHSLATGEPYMTEYRCRSKDGEWRWFLGRALPLRNKQTGKIEKWFGTCTDV 657

Query: 438  VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST-----------NRAVSKLFG 486
             ++   K + +    QL S++  ++  +  ++    I              N       G
Sbjct: 658  HESIETKIEAKRTRQQLLSVIALSNMTMFTVDLNRKITMIEGALIWDYQCDNTTSRWFIG 717

Query: 487  YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ--TLEKITLGSTKEEKLLSLRII 544
              V D+  +     L +         L  IL     +    E    G     +   +   
Sbjct: 718  ENVYDVFNR-LNSQLPEGQMPAFLSPLESILDGSTTREDFQEHEMDGRWYRTRFQPILGK 776

Query: 545  IKKLPFS-----SCYSLTMHDISEWKQEKN----------KLSHAKKIAEKESSHKSDFL 589
              +               + D++E K  +           +L   +  A++ S  KS FL
Sbjct: 777  RIREKGEANTIIEGVIGLIMDVTELKAREQDIQAQAQEKRQLVANEAAAKEASRLKSQFL 836

Query: 590  ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
            A +SHEIRTP+T +IG SE++ +            +    I RS N +L ++ND+LD SK
Sbjct: 837  ANMSHEIRTPITGVIGMSELLLDVEL----TEEQRDITENIYRSANALLTVINDILDFSK 892

Query: 650  IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR---ILADLRSVKQ 706
            +ESG++++     SL   V +   ++   A  K +   +  + +I     ++ D   V+Q
Sbjct: 893  VESGRLDIEEVQFSLSVIVRDVSKMLSFAAERKDLAFHSDISEDIETDMVVMGDPGRVRQ 952

Query: 707  IALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQ 762
            I  N+++N+I FT  G  +  S     +     E+   + DTG+G+     ++  +PF Q
Sbjct: 953  IITNLVTNSIKFTNHG-HVKFSVFKEKDTPEITEIKFVIEDTGIGIEEEVRKRLFQPFSQ 1011

Query: 763  IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
               S   +  GTGLGL + K ++D   G+  + ST   GT      P
Sbjct: 1012 GDASTARKFGGTGLGLTICKHLLDLMKGRMVLESTLGTGTTATFWIP 1058



 Score = 58.1 bits (139), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 31/300 (10%), Positives = 66/300 (22%), Gaps = 23/300 (7%)

Query: 64  NTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD 123
           N      E  F         +  W     G     +       G       G        
Sbjct: 537 NQIKAADEERFGLICDTMP-QLVWTATPDGQHDFYNSRWYHYTGLSEEDSFGEGWSKPFH 595

Query: 124 ILH-IDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN-REFSGFRGF 181
               ++        L     +  +      +G   +      ALP+ ++   +    + F
Sbjct: 596 PDDMVEAAKRWKHSLATGEPYMTEYRCRSKDGE--WRWFLGRALPLRNKQTGKIE--KWF 651

Query: 182 GIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS 241
           G         + +   KR  ++   +  +             I   +         +  +
Sbjct: 652 GTCTDVHESIETKIEAKRTRQQLLSVIALSNMTMFTVDLNRKITMIEGALIWDYQCDNTT 711

Query: 242 SLT-------EYYAHKDDVLKTEKYPLLTSEESSL----PEQEDFHTINLNQYTKKQYFG 290
           S         + +   +  L   + P   S   S+      +EDF    ++    +  F 
Sbjct: 712 SRWFIGENVYDVFNRLNSQLPEGQMPAFLSPLESILDGSTTREDFQEHEMDGRWYRTRFQ 771

Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLL 350
            +           +      +    D  E    E                   AN +   
Sbjct: 772 PILGKRIREKGEANTIIEGVIGLIMDVTELKARE-----QDIQAQAQEKRQLVANEAAAK 826


>gi|163797148|ref|ZP_02191103.1| PAS/PAC domain [alpha proteobacterium BAL199]
 gi|159177664|gb|EDP62217.1| PAS/PAC domain [alpha proteobacterium BAL199]
          Length = 666

 Score =  334 bits (856), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 121/644 (18%), Positives = 226/644 (35%), Gaps = 23/644 (3%)

Query: 173 REFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP 232
             F+           +   D              L          E E+  +     P  
Sbjct: 29  GGFTVLLALLYARQIKKTADAERALATERATVQELERSLPA-RLQEHERSILEGVAVPVW 87

Query: 233 HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL 292
             R    +             L+        +      + E  + +            T 
Sbjct: 88  RRRPDGTLGYGNAPAMPLYPELEKVGPLAERAIHVGRAQSESRNMVVHGDRRLVDVTETP 147

Query: 293 QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLL 351
             +               L +      +   + ++       ++     L +AN +F  L
Sbjct: 148 AADGGTVGTARDLTALEQLQSELARHVDAHADVLETLRTAVAIFGPDKRLIFANTAFGRL 207

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411
                 D +E    L+ +L+  + +     +       D      +  +        +  
Sbjct: 208 WSV-DADLLERDPTLTEVLERARENRRLPEQSDFRAWRDDFNRLFTTLI-------GSHE 259

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI----LEATSDGIAI 467
            + F+P +   +        G      +   ++  +E     L ++    L+   DGIA 
Sbjct: 260 ELLFLPDDTTVRMAVTSHPFGGLLMVFEDVTDRLTLERSYNTLTAVQQETLDNLYDGIAA 319

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM--NHYLTEILSLDLRQTL 525
              +G +   N      +G P +    +P    + +              + +  + +  
Sbjct: 320 FGADGRLKLINPTYRHQWGLPDDFGDDEPHVGLVLEAMRLKFGEEDRWPSVKAEWVTRLA 379

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
           E++      E+    +              L+  D+++    +  L    +  E     K
Sbjct: 380 ERVPRSGRIEQSDGRVLDYGVVPLPDGASLLSFRDVTDTLAVQRALQERTEALEMADRLK 439

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
           S+FLA VS+E+RTPL AIIGFSE+++ +  GP+ N R  EYA  I +S N ++ +VND+L
Sbjct: 440 SEFLANVSYELRTPLNAIIGFSEILEQEYAGPM-NDRQKEYARAILQSSNRLVRLVNDIL 498

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
           D++ IE+G + L    V     +     L +  A  +RI         +  I+ D R + 
Sbjct: 499 DLASIEAGYLELERIEVDPLRLIEAVEGLGRERARARRIDFSVRIDGTVAPIMVDERRLT 558

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           Q   N++SNA  FTP GG+++++     ++ V+ RV DTGVG+   +  +    F +   
Sbjct: 559 QALYNLVSNAFAFTPDGGRVLVTVE-DDDDMVLFRVADTGVGIALEDQGRVFDRFERAGR 617

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
                  G GLGL L K++V+ + G   + S P  GT +    P
Sbjct: 618 DA-----GAGLGLALVKSLVELHHGTVELLSEPGHGTEVICRIP 656


>gi|254187078|ref|ZP_04893593.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei Pasteur 52237]
 gi|157934761|gb|EDO90431.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei Pasteur 52237]
          Length = 770

 Score =  334 bits (856), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 104/519 (20%), Positives = 181/519 (34%), Gaps = 27/519 (5%)

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEI 362
           S R + +L        +     +        V   HG L Y NPS   L        +  
Sbjct: 112 SRRANDALRRREAGARHYYETLLQSLTQGVVVSDRHGMLTYMNPSAAALIGC-DATAVRG 170

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
                                +          +       +  +    + +        +
Sbjct: 171 LPFRDVYRAYDGRGARVRASALEHVLRSGRSASVEGH--WLAPHDGQRVPIAEAASPLVD 228

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
              +      I  +    R      ++    L  ++EA+ D I  +     I S N A  
Sbjct: 229 SAGDMTGAVLIVRDISIERERSAASQM----LRRLVEASPDAIVGVGSNRRITSWNPAAR 284

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
           ++FGY           + +           L E +            L   ++   +   
Sbjct: 285 RMFGYDEHAARGCDVAMLIAPRWLRNHP--LPESVPDMREPIENVDVLCVRQDGGRMRAT 342

Query: 543 IIIKKLPFSSCYSL----TMHDISEWKQEKNK-------LSHAKKIAEKESSHKSDFLAR 591
           +    +       +    T+ D  E ++ + +          A++ A+  +  K + LA 
Sbjct: 343 MSASPVFDERDACIALSLTLRDTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLAT 402

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           VSHE+RTPL  I G+ EV++N   G L      +  + IDRS   +  +V D+LD S + 
Sbjct: 403 VSHELRTPLNVIYGWIEVLRNPVDGAL----QQQAIDAIDRSARSLSRMVGDILDASSLA 458

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
           +GK+ L   PV L   V++    +   A    I +    A     +  D   ++Q+  N+
Sbjct: 459 TGKLRLDAMPVDLVRIVNDVTGALGAAAQADGIALSVECALATCIVSGDGERLRQMLSNL 518

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           LSNA  FTP GG++ +S       +  L V DTG G++   L    + F +   +     
Sbjct: 519 LSNAFKFTPRGGRVTVSLERHD-AQAKLTVADTGQGISPEFLPHVFEAFRRAEGAPASPR 577

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFP 809
            G GLGL + + + + + GK    S    +GT   I  P
Sbjct: 578 RGLGLGLSIVRHIAELHGGKVEAASAGKNRGTTFAITLP 616



 Score = 65.4 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/225 (12%), Positives = 54/225 (24%), Gaps = 5/225 (2%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK---RQNTWYGK 146
           D HG L  ++      IG  A  + G+   DV               L+   R       
Sbjct: 145 DRHGMLTYMNPSAAALIGCDATAVRGLPFRDVYRAYDGRGARVRASALEHVLRSGRSASV 204

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
              W        VPI  AA P+     + +G     IV    ++ +  A  + L +    
Sbjct: 205 EGHWLAPHDGQRVPIAEAASPLVDSAGDMTGA--VLIVRDISIERERSAASQMLRRLVEA 262

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
             +   G  S  +      + +    +     +   +    A +          +    E
Sbjct: 263 SPDAIVGVGSNRRITSWNPAARRMFGYDEHAARGCDVAMLIAPRWLRNHPLPESVPDMRE 322

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
                       +  +         + +                 
Sbjct: 323 PIENVDVLCVRQDGGRMRATMSASPVFDERDACIALSLTLRDTGE 367


>gi|256851720|ref|ZP_05557108.1| two-component system response regulatory system histidine kinase
           [Lactobacillus jensenii 27-2-CHN]
 gi|260661562|ref|ZP_05862474.1| two-component system response regulatory system histidine kinase
           [Lactobacillus jensenii 115-3-CHN]
 gi|256615678|gb|EEU20867.1| two-component system response regulatory system histidine kinase
           [Lactobacillus jensenii 27-2-CHN]
 gi|260547619|gb|EEX23597.1| two-component system response regulatory system histidine kinase
           [Lactobacillus jensenii 115-3-CHN]
          Length = 617

 Score =  334 bits (856), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 91/432 (21%), Positives = 181/432 (41%), Gaps = 37/432 (8%)

Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
             R+  +Q    +            ++  +           V+    +   E E  +L S
Sbjct: 209 EMRMQALQVADGDYSGQV--KIYSNDELGQLAEAFNTLSIRVERSQEQS--ESERRRLDS 264

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           +L   +DG+   +R G ++  N+          +D + KP T  L  +        +   
Sbjct: 265 VLSHMTDGVIATDRHGNVIILNQMALSFLDIKEKDAVSKPITKILGLDDDVSAQELI--- 321

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKK--LPFSSCYSLTMHDISEWKQEKNKLSHA 574
                +Q +       T +E +L     + +    F S     +HD++E ++ +N+    
Sbjct: 322 ---GNQQEMMITVNEGTPDEMILHANFSLIRRVTGFVSGAVCVLHDVTEQQKNENE---- 374

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
                     +  F++ VSHE+RTPLT++  + E + +  +         ++        
Sbjct: 375 ----------QRQFVSNVSHELRTPLTSLRAYIEALNDGAW--KDPEIAPQFLEVTQEET 422

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV--------QLYANEKRILI 686
             ++ ++NDLL +S+++ G + +  E V+ ++ +S  ++          +    +K+  I
Sbjct: 423 ERMIRMINDLLSLSRMDRGVVKMDLEWVNFNDFLSHVLNRFDMIVKNDEKDQTGQKKYSI 482

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
           +    N    +  D   + Q+  NI++NAI ++P GG I +  T + N ++IL + D G+
Sbjct: 483 KRKITNQDLWVEIDTDQMMQVIDNIMNNAIKYSPDGGVITVGLTQSQN-QIILSISDQGL 541

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+   +L K    F ++  ++     GTGLGL +AK +V+A+ GK +  S   KG+   I
Sbjct: 542 GIPKKDLNKIFDRFYRVDKARSREQGGTGLGLAIAKEIVEAHKGKIWADSQEGKGSTFYI 601

Query: 807 IFPLYDTSHPHD 818
             P    S   D
Sbjct: 602 SLPFEPMSEEDD 613


>gi|238855834|ref|ZP_04646123.1| sensor protein YycG [Lactobacillus jensenii 269-3]
 gi|282933324|ref|ZP_06338707.1| sensor protein kinase WalK [Lactobacillus jensenii 208-1]
 gi|238831497|gb|EEQ23845.1| sensor protein YycG [Lactobacillus jensenii 269-3]
 gi|281302509|gb|EFA94728.1| sensor protein kinase WalK [Lactobacillus jensenii 208-1]
          Length = 621

 Score =  334 bits (856), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 89/433 (20%), Positives = 179/433 (41%), Gaps = 38/433 (8%)

Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
             R+  +Q    +            ++  +           V+    +   E E  +L S
Sbjct: 212 EMRMQALQVADGDYSGQV--KIYSNDELGQLAEAFNTLSIRVERSQEQS--ESERRRLDS 267

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           +L   +DG+   +R G ++  N+          ++ + KP T  L           +   
Sbjct: 268 VLSHMTDGVIATDRHGNVIILNQMALSFLDIKEKEAVNKPITKILGLADDVSAQELI--- 324

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKK--LPFSSCYSLTMHDISEWKQEKNKLSHA 574
                +Q +       T +E +L     + +    F S     +HD++E ++ +N+    
Sbjct: 325 ---GNQQEMMITVNEGTPDEMILHASFSLIRRVTGFVSGAVCVLHDVTEQQKNENE---- 377

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
                     +  F++ VSHE+RTPLT++  + E + +  +         ++        
Sbjct: 378 ----------QRQFVSNVSHELRTPLTSLRAYIEALNDGAW--KDPEIAPQFLEVTQEET 425

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV---------QLYANEKRIL 685
             ++ ++NDLL +S+++ G   +  E V+ ++ +S  ++           +    EK+  
Sbjct: 426 ERMIRMINDLLSLSRMDRGVAKMDLEWVNFNDFLSHVLNRFDMIVKKDAEKGQEGEKKYS 485

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           I+    N    +  D   + Q+  NI++NAI ++P GG I +  + + N ++IL + D G
Sbjct: 486 IKRKITNQDLWVEIDTDQMMQVIDNIMNNAIKYSPDGGVITVGLSQSQN-QIILSISDQG 544

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+   +L K    F ++  ++     GTGLGL +AK +V+A+ G+ +  S   KG+   
Sbjct: 545 LGIPKKDLNKIFDRFYRVDKARSREQGGTGLGLAIAKEIVEAHKGRIWADSQEGKGSTFY 604

Query: 806 IIFPLYDTSHPHD 818
           I  P    S   D
Sbjct: 605 ISLPFEPMSEEDD 617


>gi|255534918|ref|YP_003095289.1| PAS/PAC domain protein [Flavobacteriaceae bacterium 3519-10]
 gi|255341114|gb|ACU07227.1| PAS/PAC domain protein [Flavobacteriaceae bacterium 3519-10]
          Length = 915

 Score =  334 bits (856), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 115/505 (22%), Positives = 207/505 (40%), Gaps = 31/505 (6%)

Query: 313 AYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
              ++  N   E  +       V+S  G     NP+F  +  +   +     G +     
Sbjct: 141 KEQEQRLNSYDELFETSNDLLGVFSLDGKFVKLNPAFSKMLGWSD-EQFMSRGFIE--FV 197

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
            P+  ++       L + +      +     I  +            E  +     +   
Sbjct: 198 HPEDRESTLQVINTLAQGESL---VNFTNRYIIKSGAVRWIEWTCTPELQSGLVYTIG-- 252

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA-IINREGIILSTNRAVSKLFGYPVE 490
               +  +    ++ +E    +     E  + GI  I + EG +L  N A     GY  E
Sbjct: 253 ---RDVTEFTTKQKLLERNEQKYRDPFEK-NQGIISIHDDEGYLLDVNEAGLNASGYLRE 308

Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE-KLLSLRIIIKKLP 549
           ++        +       +  YL++I +               K   K +   +      
Sbjct: 309 ELKDLNLYDLIIPEKHQNVKAYLSQIKTSGHASG---EMTVRKKNGEKAVWHFMSAIDED 365

Query: 550 FSSCYSLTM--HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
                 +     DI+E K+ ++++  AK++AEK    KS+F+A +SHEIRTPL  IIGF+
Sbjct: 366 VDGKVQVIANAVDITERKKMEDEIVAAKELAEKAYVLKSEFVANMSHEIRTPLNGIIGFT 425

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
           E++         +    +Y + I++SG  +  I+ND+LD SK+E  K+ L+ + V ++E 
Sbjct: 426 ELLLETNL----DDTQRQYLDIINQSGVSLYSIINDILDFSKLEKHKLKLNLDKVEIEEL 481

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII 726
           VSEA ++V     +KR+ +     +NIPR +  D   +KQ+ +N+LSNA+ FT  G +I+
Sbjct: 482 VSEAFNIVAYSNTKKRLEMLIDIDDNIPRYVWTDEMRLKQVFVNLLSNALKFTEEG-EIV 540

Query: 727 ISTTH-----TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           +            ++    VRDTGVG+   +       F Q   S   +  GTGLGL ++
Sbjct: 541 LYVKVLADLSEGKKKFRFGVRDTGVGINKEKQAVIFSAFSQEDGSITKKYGGTGLGLTIS 600

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEI 806
             +++       + S   KG+    
Sbjct: 601 NQILELAGSVLQLESEQGKGSDFFF 625



 Score = 55.0 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/240 (10%), Positives = 71/240 (29%), Gaps = 9/240 (3%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151
            G   +++    K +G    + +     +       +    + + L +  +    T  + 
Sbjct: 167 DGKFVKLNPAFSKMLGWSDEQFMSRGFIEFVHPEDRESTLQVINTLAQGESLVNFTNRYI 226

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
           I+ +     I+    P      E      + I          + L +R ++K+    E  
Sbjct: 227 IK-SGAVRWIEWTCTP------ELQSGLVYTIGRDVTEFTTKQKLLERNEQKYRDPFEKN 279

Query: 212 KGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
           +G  S+  ++  +        +    ++ ++  L  Y     +  +  K  L   + S  
Sbjct: 280 QGIISIHDDEGYLLDVNEAGLNASGYLREELKDLNLYDLIIPEKHQNVKAYLSQIKTSGH 339

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
              E        +     +   +  +     + +++    +     ++      E  +K 
Sbjct: 340 ASGEMTVRKKNGEKAVWHFMSAIDEDVDGKVQVIANAVDITERKKMEDEIVAAKELAEKA 399


>gi|182678924|ref|YP_001833070.1| multi-sensor hybrid histidine kinase [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182634807|gb|ACB95581.1| multi-sensor hybrid histidine kinase [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 816

 Score =  334 bits (856), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 89/365 (24%), Positives = 167/365 (45%), Gaps = 14/365 (3%)

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
              +  ++++A    +     +G     +   ++  G P  ++L   +   L  +     
Sbjct: 8   HRREWRNLIDALPQLVWAATPDGTCDYFSHQWTEYTGVPESELLGWRWIEVLHPDDREPT 67

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWK 565
             + T+ ++       +       ++      +     +  S      +  +  DIS+ K
Sbjct: 68  REFWTDSVAG--HHPYDVEYRVRRRDGVYGWFKTRGVPIRDSRGIISKWCGSCTDISDLK 125

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + +  L+ AK  AE+ +  K +FLA +SHEIRTP+  +IG ++++     G   + +  E
Sbjct: 126 RAEVALTRAKAEAEQANVAKGEFLANMSHEIRTPMNGVIGMAQLL----DGTELSVQQRE 181

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           Y + I  S + ++ ++ND+LD SKIE+GK+ L   P  L + + + +  +   A  K + 
Sbjct: 182 YVSIILHSADTLMRLINDVLDFSKIEAGKLELESIPFQLRDTLGDTLHSLAARAAHKGLE 241

Query: 686 IRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEV--ILRV 741
           +       IP  ++ D   ++QI  N++ NAI FT  G  ++ +    T++ +V     V
Sbjct: 242 LAYHVPVEIPDALVGDPTRLRQIITNLVGNAIKFTEKGEVVVDVRLKETTDTDVQLEFEV 301

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
           RDTG+G++  + EK    FGQ   S   R  GTGLGL +A  + +   GK  + S P  G
Sbjct: 302 RDTGIGISKNQQEKVFTAFGQADASTTRRYGGTGLGLTIAAQLAEKMGGKIKLESEPGVG 361

Query: 802 TLIEI 806
           +    
Sbjct: 362 STFSF 366



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 25/251 (9%), Positives = 59/251 (23%), Gaps = 10/251 (3%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQNTW 143
             W     G     S +  +  G    +++G R  +V      +P      D +   + +
Sbjct: 22  LVWAATPDGTCDYFSHQWTEYTGVPESELLGWRWIEVLHPDDREPTREFWTDSVAGHHPY 81

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +  +   +G  +Y       +PI       S  +  G                R   +
Sbjct: 82  DVEYRVRRRDG--VYGWFKTRGVPIRDSRGIIS--KWCGSCTDISDLKRAEVALTRAKAE 137

Query: 204 FSHLHEIKKGHSSVEKEKYD-----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
               +  K    +    +       +           +  +         H  D L    
Sbjct: 138 AEQANVAKGEFLANMSHEIRTPMNGVIGMAQLLDGTELSVQQREYVSIILHSADTLMRLI 197

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
             +L   +    + E        + T      +L   +      L++     +       
Sbjct: 198 NDVLDFSKIEAGKLELESIPFQLRDTLGDTLHSLAARAAHKGLELAYHVPVEIPDALVGD 257

Query: 319 ENLTPETVDKC 329
                + +   
Sbjct: 258 PTRLRQIITNL 268


>gi|115523225|ref|YP_780136.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisA53]
 gi|115517172|gb|ABJ05156.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisA53]
          Length = 1039

 Score =  334 bits (856), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 118/740 (15%), Positives = 230/740 (31%), Gaps = 68/740 (9%)

Query: 122 SDILHIDPNNHIGDLLKRQNTWY--GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFR 179
           + ++ ID       L +  +T    G+  L  I+G+         A  I   +R F G  
Sbjct: 143 APLISIDDREQFRYLSEVDDTNSIIGEPVLSRIDGS----WKLFLARRINGPDRRFLGLI 198

Query: 180 GFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ--SPPPHLRMK 237
              I    +   D        +     L        +       +  ++   P P    +
Sbjct: 199 EASI--KLKSLEDFYQSIDLGEGSTIALIRRDGALLARYPRTDTMIGRRLTDPEPGKMER 256

Query: 238 NKVSSLTEYYAHKDDV------LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291
           +            D           + +PL  S   +          +            
Sbjct: 257 DLKEGAVVSRLALDGEHRYVAYRPVKDFPLTVSTTLTQDVVLASWRGDATIEAFGALGAV 316

Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLF--YANPSFL 349
                  S            +            +         +   G+     A  S +
Sbjct: 317 AGVLLLLSVLTRQIGKGRRSALLLARQNARFARSRQMLLDAQRIGKLGHWMTNAAGDSAV 376

Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
              +   +  +    G+S       +   +    +      R+                 
Sbjct: 377 WSPQLFEIAGLAPRPGVSLDQFLALIHPEDLQVFLHELELSRSGDTKLIHELRWVRPDGA 436

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469
              +      + +   + +   GI  +  + +  +   E     L   +E+ S G  + +
Sbjct: 437 IRWIRMEADRRRDANGDPVGVFGIVQDITERKRAEAAAEASRHLLVDAIESMSQGFVLYD 496

Query: 470 REGIILSTNRAVSKLF-GYPVEDILRKPFTVFLEQNTPSVMNHYLTE--------ILSLD 520
           +    +  N    ++F            +   L     S +                +  
Sbjct: 497 KHDRFVLANSHFKEMFPELADRMKPGMRYEDVLCAVHQSDLVDAPKAGASFDEWLARTTA 556

Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA------ 574
             +   +         + + L   +         +    DI+++K  +  L         
Sbjct: 557 WHRAANRPIERRYDNGRWIRL---VDHRTSDGGIAGLRTDITDFKTIEAALEQKVADLEL 613

Query: 575 ----------------------KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
                                 K+ AE  S  KSDFLA +SHEIRTP++ ++G  ++++ 
Sbjct: 614 ARNNLESQKQELVAKSADLELAKETAEAASRAKSDFLAIMSHEIRTPMSGMVGMIDLLRE 673

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
                        YA     S N +L + ND+LD SK+E+G++        ++  +  AI
Sbjct: 674 TPLTA----EQKGYAEIAKESVNSLLGVTNDILDFSKLEAGELKAEAIDFDIEHTIGGAI 729

Query: 673 SLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
           SL++  A  K++ IRT     +P  ++ D   ++QI LN+++NAI FT  G  I +  ++
Sbjct: 730 SLMKAKAQAKQLDIRTVLTPGLPKWLVGDPSRIRQILLNLINNAIKFTEQGA-ISVKASY 788

Query: 732 ----TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
                   E+ + + DTG+G+     ++   PF Q   S   +  GTGLGL + K +   
Sbjct: 789 HSLDDDKIELRIEIVDTGIGIPMEVQQRLFNPFVQADTSISRKYGGTGLGLAICKQLALM 848

Query: 788 NMGKFYIFSTPAKGTLIEII 807
             G+  + S P  G+     
Sbjct: 849 MGGEIGVRSGPEPGSTFWFT 868


>gi|297539506|ref|YP_003675275.1| PAS/PAC sensor hybrid histidine kinase [Methylotenera sp. 301]
 gi|297258853|gb|ADI30698.1| PAS/PAC sensor hybrid histidine kinase [Methylotenera sp. 301]
          Length = 681

 Score =  334 bits (856), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 108/535 (20%), Positives = 206/535 (38%), Gaps = 42/535 (7%)

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPF----FVYSHG------NLFYANPSFLLLTKYKS 356
           N   L +   E + L     +     F     +Y              NP+F        
Sbjct: 23  NQEQLISELGESKQLYHTLFNSIDEGFCLIEMIYDQQENPIDWRFLETNPAFEKQNG--- 79

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
              +  A G      AP +          + R+    I        +         +   
Sbjct: 80  ---LYEAEGRRISELAPDMEPYWFNIYGEVART-GEPIRFQNETKAL---GGRWFDLYAF 132

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476
                   P +     +  +    +      +  +    S+L A+ D +  I+ EG I  
Sbjct: 133 RI----GEPGSHKIAVLFKDITKGKKADEATQYALQYARSLLGASLDPLVTIDAEGKITD 188

Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
            N A     G P E ++   F  +              ++         +          
Sbjct: 189 VNEASEHATGIPRERLIGTDFCNYF--TDTVKAREGYQKVFFDGF--VRDYPLAIRHVSG 244

Query: 537 KLLSLRIIIKKLPFSSC----YSLTMHDISEW-------KQEKNKLSHAKKIAEKESSHK 585
           +++ +          S           D+++        +++  +L  +K  AE+ +  K
Sbjct: 245 RIMDVLYNASIYKDESGNVLGIFAAARDVTQQNILDQKLREKNIELERSKIAAEQANLAK 304

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
           SDFL+ +SHE+RTPL AI+GF++++  +   P       +    I ++G  + D++N++L
Sbjct: 305 SDFLSNMSHELRTPLNAILGFAQLL--EGGTPAPTETQTKRLKEILKAGWYLTDMINEIL 362

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
           D++KIESG+  +  EPV L   + E  S+ +  A E  I +  S  N +  + AD   +K
Sbjct: 363 DLAKIESGQTPMLLEPVLLTNLLFECQSMFEPNALESGIKLLFSMVNRMWSVRADQTKLK 422

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           Q+  N+LSNAI +    G + +  + ++   + + V+D G G++  +L +  +PF ++  
Sbjct: 423 QVVSNLLSNAIKYNSEQGTVEVKCSESALGRIRISVKDNGAGLSAEKLAQLFQPFNRL-G 481

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820
            +    EGTG+GL ++K +++   G   + S    G+   I     D+ H H+ I
Sbjct: 482 QEVGVKEGTGIGLAVSKKLIEMMGGTIGVESAVGVGSEFWIELDKDDSLHAHELI 536



 Score = 40.8 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/177 (10%), Positives = 44/177 (24%), Gaps = 5/177 (2%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           IDA G + +++E      G    ++IG   C+      +        +            
Sbjct: 180 IDAEGKITDVNEASEHATGIPRERLIGTDFCN-YFTDTVKAREGYQKVFFDGFVRDYPLA 238

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           +  + G    + +   A      +    G   F         N      +  + +     
Sbjct: 239 IRHVSGRI--MDVLYNASIYKDESGNVLGI--FAAARDVTQQNILDQKLREKNIELERSK 294

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
              +  +  + +     S +   P   +      L        +        +L + 
Sbjct: 295 IAAEQANLAKSDFLSNMSHELRTPLNAILGFAQLLEGGTPAPTETQTKRLKEILKAG 351


>gi|260584311|ref|ZP_05852058.1| sensory box histidine kinase VicK [Granulicatella elegans ATCC
           700633]
 gi|260157829|gb|EEW92898.1| sensory box histidine kinase VicK [Granulicatella elegans ATCC
           700633]
          Length = 616

 Score =  334 bits (856), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 77/376 (20%), Positives = 164/376 (43%), Gaps = 31/376 (8%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +  +   E E  +L S+L   SDG+   +R G I+  N A   +     E ++  P    
Sbjct: 254 KEAQESTESERQRLDSVLRHMSDGVIATDRRGRIVIMNTAALDILNLKSEKVIGIPLLSI 313

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTM 558
           L  +        L         + +         E+ ++     + +      S     +
Sbjct: 314 LPLDEKVTFRELLE----TQQERLIHLE---EDGEDSIIQCEFSVIQRESGFISGLVCVL 366

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            D++E ++                  + +F++ VSHE+RTPLT+I  ++E + +  +   
Sbjct: 367 TDVTEQQKI--------------DRERRNFVSNVSHELRTPLTSIKSYTEALVDGAW--E 410

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
                  +   I+   + ++ ++ DLL++S+++  ++ L  E ++++E V   ++  ++ 
Sbjct: 411 NKEIAPGFLKVIETETDRMMRMITDLLNLSRMDQNRLGLEKEFINMNELVLHIVNRFEMV 470

Query: 679 AN-----EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
                  EK   I T        +  D   + Q+  NI++NAI ++P GG+II+     +
Sbjct: 471 LQSEPYREKNYRILTDITQRDLWVELDQDKITQVLDNIINNAIKYSPDGGRIIVRL-MET 529

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
           + ++I+ V D G+G+   ++      F ++  ++     G+GLGL +A+ +V  + GK +
Sbjct: 530 HTDIIVSVSDEGLGIARKDIPHLFDRFYRVDKARSRAMGGSGLGLAIAQEVVQLHGGKIW 589

Query: 794 IFSTPAKGTLIEIIFP 809
           + S   KG+   +  P
Sbjct: 590 VNSIENKGSTFFVSLP 605



 Score = 48.5 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 40/379 (10%), Positives = 104/379 (27%), Gaps = 36/379 (9%)

Query: 11  EDILTSNCKGNTQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDS 70
           E I   N  G  +  S  +I    +  ++  +        Q +   + Q   S   ++  
Sbjct: 220 EKIAEGNYTGEVKIYSDDEIG---QLGQAINDLSFKIKEAQESTESERQRLDSVLRHMSD 276

Query: 71  ENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN 130
                              D  G +  ++      +   + K+IG+ L  +     +D  
Sbjct: 277 G--------------VIATDRRGRIVIMNTAALDILNLKSEKVIGIPLLSILP---LDEK 319

Query: 131 NHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVD 190
               +LL+ Q     +      +G +  +  + +   I   +   SG     ++      
Sbjct: 320 VTFRELLETQQ---ERLIHLEEDGEDSIIQCEFSV--IQRESGFISGL--VCVLTDVTEQ 372

Query: 191 NDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK 250
                   R  + F      +        + Y          +  +      + E    +
Sbjct: 373 ----QKIDRERRNFVSNVSHELRTPLTSIKSYTEALVDGAWENKEIAPGFLKVIETETDR 428

Query: 251 DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310
              + T+   L   +++ L  +++F  +N         F  +  +     +        +
Sbjct: 429 MMRMITDLLNLSRMDQNRLGLEKEFINMNELVLHIVNRFEMVLQSEPYREKNYRILTDIT 488

Query: 311 LSAYF-DEGENLTPETVDKCPIPFFVY--SHGN-LFYANPSFLLLTKYKSVDDIE-IAGG 365
               + +  ++   + +D        Y    G  +     +   +    S + +      
Sbjct: 489 QRDLWVELDQDKITQVLDNIINNAIKYSPDGGRIIVRLMETHTDIIVSVSDEGLGIARKD 548

Query: 366 LSTLLDAPKLSDNNAIKPV 384
           +  L D     D    + +
Sbjct: 549 IPHLFDRFYRVDKARSRAM 567


>gi|255037080|ref|YP_003087701.1| PAS/PAC sensor hybrid histidine kinase [Dyadobacter fermentans DSM
           18053]
 gi|254949836|gb|ACT94536.1| PAS/PAC sensor hybrid histidine kinase [Dyadobacter fermentans DSM
           18053]
          Length = 667

 Score =  334 bits (856), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 96/385 (24%), Positives = 177/385 (45%), Gaps = 20/385 (5%)

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDI---LRK 495
             + + ++  +   +  I   + + I +I+  +   +  N+ + K+ GY   ++    RK
Sbjct: 132 REVAEHELAEKEEFINKIALLSPNIIYVIDIEKWTNIFHNKQIWKILGYSEHEVETDTRK 191

Query: 496 PFTVFLEQNTPSVMNHYLTEIL-SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC- 553
                + +        +   +  S+   + +EK      K    + +         ++  
Sbjct: 192 GLARIINERDQHTFRAHYNHMRYSVKDAEVVEKEFRLKHKNGSEIWIITREVPFKRNARG 251

Query: 554 ----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                  T  DI+  K  + +L  AKK AE+ +  KSDFL+ +SHEIRTP+ AIIGF+++
Sbjct: 252 RVQEVLGTAIDITARKIAEKELIQAKKDAEEATRIKSDFLSTMSHEIRTPMNAIIGFTDL 311

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           + +  F      +  +Y N I  S + +L I+ND+LD SKIE+GK  L      L E + 
Sbjct: 312 LLSSGFTG----QEQQYLNTIKYSADNLLVILNDILDFSKIEAGKFGLENFEFDLREKLG 367

Query: 670 EAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
             +   ++ A EK I      + ++P+ ++ D   + QI +N++ NAI FT  GG + +S
Sbjct: 368 YLMKTFEIRAKEKSIQFTFQCSTDVPQIVMGDPYRLNQIMVNLIGNAIKFTEEGGSVEVS 427

Query: 729 TTHTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ-IRGEGTGLGLPLAKA 783
                +     ++ + V D+G+G++  +L      F Q  N+       GTGLGL + + 
Sbjct: 428 VHLDKDHGDSIDLKIDVSDSGIGISEDKLSVIFDSFSQAHNNNAVRNFGGTGLGLSITRK 487

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIF 808
           + +   G     ST  KG+   ++ 
Sbjct: 488 ITELMNGSISARSTLGKGSTFTVVL 512


>gi|170741630|ref|YP_001770285.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
 gi|168195904|gb|ACA17851.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
          Length = 1362

 Score =  334 bits (856), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 115/765 (15%), Positives = 228/765 (29%), Gaps = 67/765 (8%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLC---DVSDILHIDPNNHIGDLLKRQNTWYG 145
            ID  G +   +    + +G  +  ++G       D+      +                 
Sbjct: 388  IDGRGTVAVANRRAAELLGLASDALVGAPHARVPDLLRAAWSEAEPGGAHAGPAPLAERT 447

Query: 146  KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
                  +E  + ++P                                  A          
Sbjct: 448  LPDGRVLEIRSTWLP-----------EGGV-----VCTCTDVTARRSAEAALHEKTALLD 491

Query: 206  HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
                       V  +   +         L       +  +         +        + 
Sbjct: 492  ATLAHMDQGVLVIDQDGIVQLCNERALALLDLPAAFATEKPSFAALVAYQQRTGEFSGAT 551

Query: 266  ESSLPEQEDFHTINLNQYTKK---------QYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
            E   P  +    +       +         +       +      +     H        
Sbjct: 552  EDHDPWLKLKGDLLGAPKVYERSRPNGTVIEVRTVRLASGGAIRTFSDVTAHRQRERAIG 611

Query: 317  EGENLTPETVDKCPIPFFVYSHGN--LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
              E       +  P   +          Y N  F       S            L     
Sbjct: 612  LSEARYRALAEALPQLVWTVRPDTREALYRNAQFDRYYGPISNAV------ADRLAHNHP 665

Query: 375  LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
                   +           +    RL       +       +               G  
Sbjct: 666  ADSARMAEAWARAERASEPLTVEGRLRR----HDGVYRWHRLVMVPLLTQGVITEWLGTA 721

Query: 435  PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED--- 491
             +  D    + ++      L     A   G+   + +  ++  +R  ++ +G  V+    
Sbjct: 722  LDIDDIITAQEQVRQSKDLLQLAQTAAGAGVWEWDMQAGLVLLSRVSARRYGLEVDAADA 781

Query: 492  ---ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL-LSLRIIIKK 547
               +  + +T  L       +   + E ++      +            +   +    + 
Sbjct: 782  VVTLTSQEWTRLLHPEDAGRVWEAVHEAVATRQNYAVTFRPAARGGGGAVECWIEGHGRI 841

Query: 548  LPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSH-------KSDFLARVSHEI 596
            +   S           D++   + +  L  A ++AE+           KS+FLA +SHEI
Sbjct: 842  MRNGSGAPVRIVGLDFDVTPRMRAERALKQATRLAEQAREEAEAASTAKSEFLAMMSHEI 901

Query: 597  RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
            RTPL  I+G+++++           R +E+   I  +G  +L +VND+LD S IE+G++ 
Sbjct: 902  RTPLHGILGYADLLTECGLLAAEQQRQVEH---IRTAGRALLAVVNDVLDFSAIEAGRVA 958

Query: 657  LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNA 715
            L   P +L   + E +++V+  A  K + +       +P  ++ D   V+Q+ LN+ +NA
Sbjct: 959  LDPRPFALRALIGEVVAIVREPAERKGLTLAAEIDPAVPDWLVGDQGRVRQVLLNLAANA 1018

Query: 716  IHFTPSGGQIIISTTHT----SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
              F  +G  + +S            V   VRDTGVG+   +L +  + F Q   S +   
Sbjct: 1019 QKFCHAGS-VTLSVAPDRIAAEALTVRFAVRDTGVGIEEDKLGRLFQRFSQADGSIRREF 1077

Query: 772  EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
             GTGLGL ++KA+V+A  G+  + S P +G+       L   + P
Sbjct: 1078 GGTGLGLAISKALVEAMGGRIGVESVPGRGSTFWFTLRLLRAAPP 1122



 Score = 88.9 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 58/488 (11%), Positives = 124/488 (25%), Gaps = 66/488 (13%)

Query: 109 YAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPI 168
               +IG  +   +      P      +  ++ TW G+  L                +P+
Sbjct: 200 RTGTIIGRSVDSANATG--RPLPGFAAVKGQRGTWSGRNLL---------------GVPV 242

Query: 169 YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228
           +    + SG  G+ +     +  +  AL + L    S L  I      V           
Sbjct: 243 F-ATYQRSGVAGWLV----SIGIERSALQEPLTDSLSVLVPIIAALMFV----------- 286

Query: 229 SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288
                  M  +     ++   +          +     S     E    + +     +  
Sbjct: 287 -ALVASAMVGRRIVAAQHRLAEAARALGSGEAIPVPRSSFSEVDEVGAALAVASARLRDQ 345

Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPS 347
              L+  +++  + +  R     +        L   T+D        +   G +  AN  
Sbjct: 346 ADALRAINRDLEQMVERRTREVAAQQV-----LLSTTLDAMDQGLVMIDGRGTVAVANRR 400

Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
              L    S            L+ AP     + ++            A  A L       
Sbjct: 401 AAELLGLAS----------DALVGAPHARVPDLLRAAWSEAEPGGAHAGPAPLAERTLPD 450

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
              L +      +               +    R  +  +  +   L + L     G+ +
Sbjct: 451 GRVLEIRSTWLPEG-------GVVCTCTDVTARRSAEAALHEKTALLDATLAHMDQGVLV 503

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS------VMNHYLTEILSLDL 521
           I+++GI+   N     L   P      KP    L                +   +     
Sbjct: 504 IDQDGIVQLCNERALALLDLPAAFATEKPSFAALVAYQQRTGEFSGATEDHDPWLKLKGD 563

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE 581
                K+   S     ++ +R        S     T  D++  +Q +  +  ++      
Sbjct: 564 LLGAPKVYERSRPNGTVIEVR---TVRLASGGAIRTFSDVTAHRQRERAIGLSEARYRAL 620

Query: 582 SSHKSDFL 589
           +      +
Sbjct: 621 AEALPQLV 628


>gi|218530735|ref|YP_002421551.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium chloromethanicum CM4]
 gi|218523038|gb|ACK83623.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium chloromethanicum CM4]
          Length = 841

 Score =  334 bits (856), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 170/787 (21%), Positives = 299/787 (37%), Gaps = 77/787 (9%)

Query: 35  ETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFV---------FDPIPRTVRF 85
           E        P         F     ++ S  +    E +            +     +R 
Sbjct: 118 EGHPVLLLAPIGSLPALRPFDSGPAKADSGPDVAKPEASSSSPPPSPAPEVEAAELPLRV 177

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            W  DA G L  +S   P      A  + G     ++    I+    + + L  + T+  
Sbjct: 178 IWRSDADGVLTHVSRTHPDL----AEVLSGRSWAMLAADGVIEGA-ALTEALAARRTFRT 232

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
              L  + G      ++++  P      +FSGF GF I+                     
Sbjct: 233 LPLL--VRGRVYEHALEISGAPAGRSTDDFSGFGGFAIL-------------------GE 271

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
               + +     E++  +   +++P      ++ +S        +   +   ++      
Sbjct: 272 RRARVMERAVEDEEDGPENLQEEAPIDETEAESGLSVNEHAAFREVARVLGLRFAPDEDG 331

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
           + + P                        +               LS           E 
Sbjct: 332 DDAAPMPARA------------------ESVPSGSVMPFPIPQGRLSEAETRARLALTEL 373

Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
           ++  P+   VY    + +A+ +FL LT Y  +  +  A GL+ L       D   I PV 
Sbjct: 374 LESLPLGVLVYRGSEMLFASRTFLDLTGYADLPALRQA-GLAHLFRGLPPRDREIIGPVP 432

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
             R +   +A       + W    +          A              +     +   
Sbjct: 433 FARPEGGTVALLVDRAGLVWEGAQAEICLARAMPAAG-------------DIQLPAVPAN 479

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
              +   +   +L++  DG+  ++ EG ++  N + ++L     ++++   F       +
Sbjct: 480 AARLRAEK---VLDSLEDGVVTLDAEGRVVGLNPSAAELVHAHPKEVVGGRFADLFAPES 536

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
            S +   +T+       +               L LRI       +  Y  ++ +I +  
Sbjct: 537 LSALETAVTDSRRSGTSEVHGVTVRTGAA---ALRLRIARLLGEDAPGYCASLREIRDED 593

Query: 566 ---QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
                       +   E E   K++ LARVS EIR  L AI+G ++++ + RF      R
Sbjct: 594 VAPPAPVAEVARRSEPEAEGVWKANALARVSREIRPSLNAILGLTDMMLSDRFDRADAER 653

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
              Y   +  SG  +  +++DL D+++I++G+  L F  ++L+E V+  I+  Q  A   
Sbjct: 654 LEAYLREVRLSGGRIAALIDDLRDLAEIQAGRGKLTFADLALNELVASCIAAQQPQAARD 713

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           RI++RTS A ++P + AD RS++Q AL +L NAI  T +GGQ+I+STT     EV LRVR
Sbjct: 714 RIVLRTSLAPSLPAMKADERSIRQAALTVLGNAIRVTEAGGQVIVSTTLAEQGEVALRVR 773

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG GMT  EL  A++PFG         G+  G GL L KA+V+AN G+F I S   +GT
Sbjct: 774 DTGTGMTEDELMSALEPFG-ADLGAVPEGDEKGFGLTLTKALVEANRGRFRISSRKDEGT 832

Query: 803 LIEIIFP 809
           L+E++FP
Sbjct: 833 LVEMLFP 839


>gi|126444327|ref|YP_001064150.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei 668]
 gi|126223818|gb|ABN87323.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei 668]
          Length = 771

 Score =  334 bits (856), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 104/519 (20%), Positives = 181/519 (34%), Gaps = 27/519 (5%)

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEI 362
           S R + +L        +     +        V   HG L Y NPS   L        +  
Sbjct: 111 SRRANDALRRREAGARHYYETLLQSLTQGVVVSDRHGMLTYMNPSAAALIGC-DATAVRG 169

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
                                +          +       +  +    + +        +
Sbjct: 170 LPFRDVYRAYDGRGARVRASALEHVLRSGRSASVEGH--WLAPHDGQRVPIAEAASPLVD 227

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
              +      I  +    R      ++    L  ++EA+ D I  +     I S N A  
Sbjct: 228 SAGDMTGAVLIVRDISIERERSAASQM----LRRLVEASPDAIVGVGSNRRITSWNPAAR 283

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
           ++FGY           + +           L E +            L   ++   +   
Sbjct: 284 RMFGYDEHAARGCDVAMLIAPRWLRNHP--LPESVPDMREPIENVDVLCVRQDGGRMRAT 341

Query: 543 IIIKKLPFSSCYSL----TMHDISEWKQEKNK-------LSHAKKIAEKESSHKSDFLAR 591
           +    +       +    T+ D  E ++ + +          A++ A+  +  K + LA 
Sbjct: 342 MSASPVFDERDACIALSLTLRDTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLAT 401

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           VSHE+RTPL  I G+ EV++N   G L      +  + IDRS   +  +V D+LD S + 
Sbjct: 402 VSHELRTPLNVIYGWIEVLRNPVDGAL----QQQAIDAIDRSARSLSRMVGDILDASSLA 457

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
           +GK+ L   PV L   V++    +   A    I +    A     +  D   ++Q+  N+
Sbjct: 458 TGKLRLDAMPVDLVRIVNDVTGALGAAAQADGIALSVECALGTCIVSGDGERLRQMLSNL 517

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           LSNA  FTP GG++ +S       +  L V DTG G++   L    + F +   +     
Sbjct: 518 LSNAFKFTPRGGRVTVSLERHD-AQAKLTVADTGQGISPEFLPHVFEAFRRAEGAPASPR 576

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFP 809
            G GLGL + + + + + GK    S    +GT   I  P
Sbjct: 577 RGLGLGLSIVRHIAELHGGKVEAASAGKNRGTTFAITLP 615



 Score = 65.4 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/225 (12%), Positives = 54/225 (24%), Gaps = 5/225 (2%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK---RQNTWYGK 146
           D HG L  ++      IG  A  + G+   DV               L+   R       
Sbjct: 144 DRHGMLTYMNPSAAALIGCDATAVRGLPFRDVYRAYDGRGARVRASALEHVLRSGRSASV 203

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
              W        VPI  AA P+     + +G     IV    ++ +  A  + L +    
Sbjct: 204 EGHWLAPHDGQRVPIAEAASPLVDSAGDMTGA--VLIVRDISIERERSAASQMLRRLVEA 261

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
             +   G  S  +      + +    +     +   +    A +          +    E
Sbjct: 262 SPDAIVGVGSNRRITSWNPAARRMFGYDEHAARGCDVAMLIAPRWLRNHPLPESVPDMRE 321

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
                       +  +         + +                 
Sbjct: 322 PIENVDVLCVRQDGGRMRATMSASPVFDERDACIALSLTLRDTGE 366


>gi|319784548|ref|YP_004144024.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
 gi|317170436|gb|ADV13974.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 773

 Score =  333 bits (855), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 121/507 (23%), Positives = 223/507 (43%), Gaps = 51/507 (10%)

Query: 343 YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT 402
           Y + S   +  YK  + +   G +  ++      ++  +  +      R       ++  
Sbjct: 274 YWSRSMYDMLGYKPCETMLSFGEVDQIIH----PEDGDLFELANRIVAREIDHID-QVFR 328

Query: 403 IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
           ++      + M         + PE +   GI  +  + R    + E   ++L + +E  +
Sbjct: 329 MRHADGQWVWMRARAQVIDPEAPE-IQLIGIAVDVTEQRHLALRSEAADLRLRTAIENIN 387

Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS-VMNHYLTEILSLDL 521
           +   + +    ++  N    +  G    D++       LE+   +      L     L  
Sbjct: 388 ESFVLWDSTQHLIMCNSKYQQDNGLSDRDVMPGTARAALEERMLAFASERRLAHTSGLQG 447

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK- 580
             T E+       + + L +  +  +            DI++ K  + KL  +++     
Sbjct: 448 GATFERQL----ADGRWLQVNELKTR---DGGIVSVGSDITQIKLHQEKLVDSERRLMAT 500

Query: 581 ----------------------------------ESSHKSDFLARVSHEIRTPLTAIIGF 606
                                              +  KS+FLA +SHE+RTPL AIIGF
Sbjct: 501 IHDLSLARRAEEERSRELVDLNRKYMKETERAEAANRAKSEFLANMSHELRTPLNAIIGF 560

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
           SE+++   FGPLG+ RY EYA  I+ SG  +L ++ND+LD+SKIE+G+ +L  E + L  
Sbjct: 561 SELMEQGLFGPLGSERYEEYATDINSSGKYLLGVINDILDMSKIEAGQFSLDREEIDLGP 620

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726
            +SE + +V L A +K I + T  A+ +  ++AD R++KQI +N+LSNA+ FT  GG I 
Sbjct: 621 LISETVRVVSLQAAQKAISVETRIADAL-TLVADRRAIKQIVINLLSNAVKFTGHGGHIS 679

Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
           +     ++  ++L + D G G+    L K  +PF Q+ N       G+GLGL +++++ +
Sbjct: 680 VR-ARNTSGALVLTIEDNGCGIPKEALGKLGRPFEQVQNQFSKSHAGSGLGLAISRSLAE 738

Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLYDT 813
              G   I S+   GT++ +  P+  +
Sbjct: 739 LQGGALKIRSSEGVGTIVSVRIPVKKS 765


>gi|239907626|ref|YP_002954367.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239797492|dbj|BAH76481.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 988

 Score =  333 bits (855), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 104/387 (26%), Positives = 175/387 (45%), Gaps = 15/387 (3%)

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAI---INREGIILSTNRAVSKLFGYPVEDIL 493
            +D +  ++ +      L SI++ T  GI I     RE ++   N+A   + G     ++
Sbjct: 453 ILDQKKAEQALVKSEETLRSIIQETPIGIHIYELFERELVLTGANQAADLILGINHSQLI 512

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553
            K           + ++    E+L      T     +G        +  I+  ++  +  
Sbjct: 513 GKKLNDAFPMLEETNISDQYLEVLKTGK--TWHTEQIGYEDVNISGTYEILCFRIFSNQ- 569

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
            ++   DIS  KQE+ +L +AK+ AE  +  KS+FLA +SHEIRTPL  I+G  +++++ 
Sbjct: 570 IAVMFMDISSRKQEEFELENAKRAAESSNKAKSEFLANMSHEIRTPLNGIMGMLQLLEST 629

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
                 +    EY +    S   +  +++D+LD+S+IE G + L     ++     E I+
Sbjct: 630 D----TDHEQSEYIDIALSSCRNLTRLISDILDLSRIEHGNITLENHGFNISHLTEEVIN 685

Query: 674 LVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIII---ST 729
                 + K I + TS   NIP  +  D   ++QI  NI  N+I FT SG +I I   S 
Sbjct: 686 TFITELSSKEIELSTSIEKNIPEIVYGDSGRLRQIIFNIFGNSIKFTSSG-RIFINIDSL 744

Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
                  + + V DTG+G+   +L++   PF Q   S   +  G GLGL + K ++ A  
Sbjct: 745 IQRQTIYLFIEVSDTGIGIPEDKLDEIFVPFTQADGSLTRKYGGVGLGLSIVKKLLIAMG 804

Query: 790 GKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           G   + S   KGT   I  P   +  P
Sbjct: 805 GTITVESNIDKGTTTCIAIPFQTSEPP 831



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 31/295 (10%), Positives = 97/295 (32%), Gaps = 20/295 (6%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYK-SVDDIEIAGGL 366
            +LS    + ++L    ++  P+P F V +   +   N + L + K    +++       
Sbjct: 26  ETLSKTVMQDKSLFNTVLNCLPMPYFLVDNSERIVQTNSASLEMLKISGPIEETYGKTLA 85

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
               + PK           + ++    I         +    N L +    F   +    
Sbjct: 86  EVFYNDPKH-------ITFMSQTLCQGIVYRDLEVPTKDRHGNDLNIIANIFPLYDTNNI 138

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
            +    I     + ++ ++ ++    +   +++    G+ +   +  I+  N   S+L G
Sbjct: 139 CIGGMSIYVNHTERKMTQKALQESEKKNHDLIQNLHAGVVVHAPDSRIIVANDQASQLLG 198

Query: 487 YPVEDILRKP---FTVFLEQNT---PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
             +  +  K                 S   + +++++          + +     + L+ 
Sbjct: 199 LSIPQLKGKNALDPEWCFIHEDGTKMSFAEYPVSQVIKTRSPVRNLILGINRHLHKDLVW 258

Query: 541 LRIIIKKLPFSSC----YSLTMHDISEWKQEKNK-LSHAKKIAEKESSHKSDFLA 590
           + +        +       +T  +I++ K+ + + L +  ++    +  +  F +
Sbjct: 259 VLVNAFPEFDQNNELLQVIVTFVNITDRKKYEEQILRNEMRLLSIVNILQHQFTS 313



 Score = 43.9 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 20/251 (7%), Positives = 59/251 (23%), Gaps = 22/251 (8%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCD----VSDILHID---PNNHIGDLLKRQNTW 143
               +   +++  + +G    ++ G    D                   +  ++K ++  
Sbjct: 182 PDSRIIVANDQASQLLGLSIPQLKGKNALDPEWCFIHEDGTKMSFAEYPVSQVIKTRSPV 241

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                          V + + A P + +N E    +                   R + +
Sbjct: 242 RNLILGINRHLHKDLVWVLVNAFPEFDQNNEL--LQVIVTFVNITDRKKYEEQILRNEMR 299

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
              +  I +   +  ++  D    ++    +++          Y     V     +    
Sbjct: 300 LLSIVNILQHQFTSAQDFLDFALDEA----IKITESKIGYIYRYNEDRQVFILNTWSKDV 355

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
             E S+   +  + ++                +    + +   N                
Sbjct: 356 MHECSITSPQVCYELDKTGIW---------GEAVRQRKPIILNNFQEEHPLKKGLPPGHA 406

Query: 324 ETVDKCPIPFF 334
                  IP F
Sbjct: 407 FLKSFMTIPVF 417


>gi|53716107|ref|YP_106501.1| sensory box histidine kinase/response regulator [Burkholderia
           mallei ATCC 23344]
 gi|121596954|ref|YP_990599.1| sensory box histidine kinase/response regulator [Burkholderia
           mallei SAVP1]
 gi|126446255|ref|YP_001079435.1| sensory box histidine kinase/response regulator [Burkholderia
           mallei NCTC 10247]
 gi|167003184|ref|ZP_02268974.1| sensory box histidine kinase/response regulator [Burkholderia
           mallei PRL-20]
 gi|254176005|ref|ZP_04882663.1| sensory box histidine kinase/response regulator [Burkholderia
           mallei ATCC 10399]
 gi|254203510|ref|ZP_04909871.1| sensory box histidine kinase/response regulator [Burkholderia
           mallei FMH]
 gi|52422077|gb|AAU45647.1| sensory box histidine kinase/response regulator [Burkholderia
           mallei ATCC 23344]
 gi|121224752|gb|ABM48283.1| sensory box histidine kinase/response regulator [Burkholderia
           mallei SAVP1]
 gi|126239109|gb|ABO02221.1| sensory box histidine kinase/response regulator [Burkholderia
           mallei NCTC 10247]
 gi|147745749|gb|EDK52828.1| sensory box histidine kinase/response regulator [Burkholderia
           mallei FMH]
 gi|160697047|gb|EDP87017.1| sensory box histidine kinase/response regulator [Burkholderia
           mallei ATCC 10399]
 gi|243061229|gb|EES43415.1| sensory box histidine kinase/response regulator [Burkholderia
           mallei PRL-20]
          Length = 771

 Score =  333 bits (855), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 104/519 (20%), Positives = 181/519 (34%), Gaps = 27/519 (5%)

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEI 362
           S R + +L        +     +        V   HG L Y NPS   L        +  
Sbjct: 111 SRRANDALRRREAGARHYYETLLQSLTQGVVVSDRHGMLTYMNPSAAALIGC-DATAVRG 169

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
                                +          +       +  +    + +        +
Sbjct: 170 LPFRDVYRAYDGRGARVRASALEHVLRSGRSASVEGH--WLAPHDGQRVPIAEAASPLVD 227

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
              +      I  +    R      ++    L  ++EA+ D I  +     I S N A  
Sbjct: 228 SAGDMTGAVLIVRDISIERERSAASQM----LRRLVEASPDAIVGVGSNRRITSWNPAAR 283

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
           ++FGY           + +           L E +            L   ++   +   
Sbjct: 284 RMFGYDEHAARGCDVAMLIAPRWLRNHP--LPESVPDMREPIENVDVLCVRQDGGRMRAT 341

Query: 543 IIIKKLPFSSCYSL----TMHDISEWKQEKNK-------LSHAKKIAEKESSHKSDFLAR 591
           +    +       +    T+ D  E ++ + +          A++ A+  +  K + LA 
Sbjct: 342 MSASPVFDERDACIALSLTLRDTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLAT 401

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           VSHE+RTPL  I G+ EV++N   G L      +  + IDRS   +  +V D+LD S + 
Sbjct: 402 VSHELRTPLNVIYGWIEVLRNPVDGAL----QQQAIDAIDRSARSLSRMVGDILDASSLA 457

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
           +GK+ L   PV L   V++    +   A    I +    A     +  D   ++Q+  N+
Sbjct: 458 TGKLRLDAMPVDLVRIVNDVTGALGAAAQADGIALSVECALATCIVSGDGERLRQMLSNL 517

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           LSNA  FTP GG++ +S       +  L V DTG G++   L    + F +   +     
Sbjct: 518 LSNAFKFTPRGGRVTVSLERHD-AQAKLTVADTGHGISPEFLPHVFEAFRRAEGAPASPR 576

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFP 809
            G GLGL + + + + + GK    S    +GT   I  P
Sbjct: 577 RGLGLGLSIVRHIAELHGGKVEAASAGKNRGTTFAITLP 615



 Score = 65.4 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/225 (12%), Positives = 54/225 (24%), Gaps = 5/225 (2%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK---RQNTWYGK 146
           D HG L  ++      IG  A  + G+   DV               L+   R       
Sbjct: 144 DRHGMLTYMNPSAAALIGCDATAVRGLPFRDVYRAYDGRGARVRASALEHVLRSGRSASV 203

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
              W        VPI  AA P+     + +G     IV    ++ +  A  + L +    
Sbjct: 204 EGHWLAPHDGQRVPIAEAASPLVDSAGDMTGA--VLIVRDISIERERSAASQMLRRLVEA 261

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
             +   G  S  +      + +    +     +   +    A +          +    E
Sbjct: 262 SPDAIVGVGSNRRITSWNPAARRMFGYDEHAARGCDVAMLIAPRWLRNHPLPESVPDMRE 321

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
                       +  +         + +                 
Sbjct: 322 PIENVDVLCVRQDGGRMRATMSASPVFDERDACIALSLTLRDTGE 366


>gi|114562197|ref|YP_749710.1| PAS/PAC sensor hybrid histidine kinase [Shewanella frigidimarina
           NCIMB 400]
 gi|114333490|gb|ABI70872.1| PAS/PAC sensor hybrid histidine kinase [Shewanella frigidimarina
           NCIMB 400]
          Length = 869

 Score =  333 bits (855), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 117/678 (17%), Positives = 245/678 (36%), Gaps = 57/678 (8%)

Query: 182 GIVHVNRVDNDPRALGK---RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKN 238
             +                  L +   +        +  +                    
Sbjct: 35  AAIEEVTERRHAEEALLNAGALQRAIFNSANFSCIATDAKGVIQIFNVGAERMLGYSAIE 94

Query: 239 KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE-----------------QEDFHTINLN 281
            V ++T         +      L     + +                   +  +   + +
Sbjct: 95  VVDNITPAEISDPQEIIARAEALSVELSTPIEPGFDALVFKATRGIEDIYELTYIRKDGS 154

Query: 282 QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP-----IPFFVY 336
           ++        L+++      YL      S+    +E                        
Sbjct: 155 RFPAVVSVTALRDDQGIIIGYLLIGTDNSVGKQAEEALLKAGALQKAIFNSANFSSIATD 214

Query: 337 SHGNLFYANPSFLLLTKYKSVDDIEIAGGLS----------TLLDAPKLSDNNAIKPVML 386
           +HG +   N     +  Y + + +                     + +L          L
Sbjct: 215 AHGVIQIFNVGAERMLGYTADEVMNKITPADISDPKEVIERAKELSIELDTAITPGFDAL 274

Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
               R  I     L  I+ +     A+        ++    +    I  ++   +  + +
Sbjct: 275 VFKARRGIEDIYELTYIRKDGSRFPAV-VSVTALRDEHKAIIGYLLIGTDNTARKRIEEE 333

Query: 447 MEIEVMQL-------CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
            +    +L        +++E+  D +   +  GII   N+ + +L G   + ++  PF  
Sbjct: 334 QKELGRRLQDQHFYTRNLIESNIDALTTTDPSGIITDVNKQMEELTGNNRDSLIGTPFKD 393

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLT 557
           +     P      +  +LS  +    E        +E ++S+         +        
Sbjct: 394 YF--TDPEFAAAGIKRVLSEKIISDYELTARTKNGKETVVSINATTFYHRDNKLQGIFYG 451

Query: 558 MHDISEWKQEKN-------KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
             D++E  +          +L +AK +AEK +  KSDFL+ +SHE+RTPL AI+GF++++
Sbjct: 452 ARDVTERNRLNQKLLEKNIELENAKAVAEKANLAKSDFLSSMSHELRTPLGAILGFAQLM 511

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
             +   P   P        I ++G  +L+++N++LD++ IESGK+ +  E VSL E + E
Sbjct: 512 --ESSTPAPPPAQKRSIAQILKAGWYLLELINEILDLALIESGKLPMSLEAVSLSEVMQE 569

Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
            + + +  A    I +  + +     +  D   +KQ+ +N+LSNAI +   GG +I+  +
Sbjct: 570 CVLMSEPQAQLHDIKVVFTRSTTKDFLNVDRTRLKQVIINLLSNAIKYNRKGGSVILEHS 629

Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
            +S++ +   VRDTG G++  +L +  +PF ++   +    EGTG+GL ++K +V++  G
Sbjct: 630 QSSDDMMRFSVRDTGEGLSAEQLGQLFQPFNRL-GQEANNQEGTGIGLVVSKRLVESMGG 688

Query: 791 KFYIFSTPAKGTLIEIIF 808
              + ST   G++     
Sbjct: 689 VIGVQSTVGVGSVFWFEL 706



 Score = 65.8 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 21/168 (12%), Positives = 44/168 (26%), Gaps = 18/168 (10%)

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
           N   +         E  + R  +  +        +I  + +      + +G+I   N   
Sbjct: 25  NSEDDVDLFEAAIEEVTERRHAEEALLNAGALQRAIFNSANFSCIATDAKGVIQIFNVGA 84

Query: 482 SKLFGYPVEDILRK-PFTVFLEQNTPSVMNHYLTEILSLDLRQTLE-------------K 527
            ++ GY   +++         +          L+  LS  +    +              
Sbjct: 85  ERMLGYSAIEVVDNITPAEISDPQEIIARAEALSVELSTPIEPGFDALVFKATRGIEDIY 144

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKL 571
                 K+       + +  L         Y L   D S  KQ +  L
Sbjct: 145 ELTYIRKDGSRFPAVVSVTALRDDQGIIIGYLLIGTDNSVGKQAEEAL 192



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 37/420 (8%), Positives = 99/420 (23%), Gaps = 70/420 (16%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK---------- 138
            DA G ++  +    + +G  A +++     +++     DP   I               
Sbjct: 71  TDAKGVIQIFNVGAERMLGYSAIEVVD----NITPAEISDPQEIIARAEALSVELSTPIE 126

Query: 139 -----------RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187
                      R      + T    +G+    P  ++   +        G+   G    N
Sbjct: 127 PGFDALVFKATRGIEDIYELTYIRKDGS--RFPAVVSVTALRDDQGIIIGYLLIGT--DN 182

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKE------------------KYDIFSQQS 229
            V         +       +       S                         ++ ++ +
Sbjct: 183 SVGKQAEEALLKAGALQKAIFNSANFSSIATDAHGVIQIFNVGAERMLGYTADEVMNKIT 242

Query: 230 PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE--QEDFHTINLNQYTKKQ 287
           P      K  +    E     D  +      L+      + +  +  +   + +++    
Sbjct: 243 PADISDPKEVIERAKELSIELDTAITPGFDALVFKARRGIEDIYELTYIRKDGSRFPAVV 302

Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT-----------PETVDKCPIPFFVY 336
               L++  K    YL      +     +E +                 ++         
Sbjct: 303 SVTALRDEHKAIIGYLLIGTDNTARKRIEEEQKELGRRLQDQHFYTRNLIESNIDALTTT 362

Query: 337 S-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIA 395
              G +   N     LT       I            P+ +     + +       +   
Sbjct: 363 DPSGIITDVNKQMEELTGNNRDSLIGTP--FKDYFTDPEFAAAGIKRVL-------SEKI 413

Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
            S    T +        ++       ++  +         +  +     +K+  + ++L 
Sbjct: 414 ISDYELTARTKNGKETVVSINATTFYHRDNKLQGIFYGARDVTERNRLNQKLLEKNIELE 473



 Score = 37.7 bits (86), Expect = 9.4,   Method: Composition-based stats.
 Identities = 24/172 (13%), Positives = 49/172 (28%), Gaps = 13/172 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            D  G + ++++++ +  GN    +IG    D            I  +L  +     + T
Sbjct: 362 TDPSGIITDVNKQMEELTGNNRDSLIGTPFKDYFTDPEFAAAG-IKRVLSEKIISDYELT 420

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                G    V I+           +       GI +  R   +   L ++L +K   L 
Sbjct: 421 ARTKNGKETVVSINATTFYHRDNKLQ-------GIFYGARDVTERNRLNQKLLEKNIELE 473

Query: 209 EIKKGHSSVEKEKYDIF-----SQQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255
             K         K D         ++P   +    ++   +           
Sbjct: 474 NAKAVAEKANLAKSDFLSSMSHELRTPLGAILGFAQLMESSTPAPPPAQKRS 525


>gi|148253661|ref|YP_001238246.1| hypothetical protein BBta_2154 [Bradyrhizobium sp. BTAi1]
 gi|146405834|gb|ABQ34340.1| hypothetical protein BBta_2154 [Bradyrhizobium sp. BTAi1]
          Length = 786

 Score =  333 bits (855), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 100/629 (15%), Positives = 213/629 (33%), Gaps = 83/629 (13%)

Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
              A  + +L+  + P   +   S                  +    LQ +   S   L+
Sbjct: 8   PTGASSEALLEAMQAPPPAAGALSFRMFLASVLAAAATVVAVELLTDLQKDRIVSLLMLA 67

Query: 305 -----------------HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLF----- 342
                             R+  +L+       +   +T         +   G+       
Sbjct: 68  FGAVVVMIVLTSMLIRKSRHAIALANALARQNDQLAQTTRLLGDAQRIGRLGHWVTDPSG 127

Query: 343 ---YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399
                +     +   + VD +  A  L  +         +    V      R    A  +
Sbjct: 128 EFAVWSDELFEIAGLEPVDQVAFAKMLDII------HPEDVGAYVRARDRSRATGCAFIQ 181

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459
                        +                + GI  +  + ++ +   +   + L   +E
Sbjct: 182 ELRFVTPNGQVRWVRIEANASDEADGVFRERFGIVQDITERKLAEINADQARLLLMDAIE 241

Query: 460 ATSDGIAIINREGIILSTNRAVSKLF---------GYPVEDILRKPFTVFLEQNTPSVMN 510
           + ++G  + +++   + +N    ++F         G    +++R+ +   L ++      
Sbjct: 242 SLTNGFVLFDKDDRFVMSNTMFREMFPAWTVLMKPGISFTELMRRAYEHGLIRSKGDRFE 301

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570
            +L             ++        + +     +            + DI+ +K  + +
Sbjct: 302 EWLAR--KTAWHLGGSRMIEHRELNGRWIQ---SVDHRISDGGTVCLVTDITAFKTVQAE 356

Query: 571 LSH-------------AKKIAEKESSH---------------KSDFLARVSHEIRTPLTA 602
           L                +    +                   KSDFLA +SHEIRTPL+ 
Sbjct: 357 LEQKLAYVEAIRSDLEQQTQELEARGAELRAARDAAEAANRAKSDFLAIMSHEIRTPLSG 416

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           ++G  ++++    G   +     Y      S +L+L+++ND+LD SK+E+G++       
Sbjct: 417 MVGMVDLLR----GTSLSEEQKRYTALAKESADLLLEVINDILDFSKLEAGRLQSECIDF 472

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPS 721
            +   V  A+S +   A  + + ++ S A  +P+ +  D   ++Q+ LN++ NAI FT  
Sbjct: 473 DVPNLVESAVSFMGEKARRRGLDLKVSLAPGLPQYLEGDPTRIRQVMLNLVGNAIKFTEQ 532

Query: 722 GGQIIISTTHT--SNE--EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
           G  I +  +H        ++ + V DTG+GM+   L +   PF Q   S   +  G+GLG
Sbjct: 533 GS-IEVRASHRQLDGGVVDLRIEVIDTGIGMSPEILAQIFDPFVQADTSISRKYGGSGLG 591

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           L + + +     G   + S   +G+    
Sbjct: 592 LAICRQLCTIMGGSIGVDSELGRGSRFWF 620


>gi|254296534|ref|ZP_04963990.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei 406e]
 gi|157806537|gb|EDO83707.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei 406e]
          Length = 770

 Score =  333 bits (855), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 104/519 (20%), Positives = 181/519 (34%), Gaps = 27/519 (5%)

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEI 362
           S R + +L        +     +        V   HG L Y NPS   L        +  
Sbjct: 112 SRRANDALRRREAGARHYYETLLQSLTQGVVVSDRHGMLTYMNPSAAALIGC-DATAVRG 170

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
                                +          +       +  +    + +        +
Sbjct: 171 LPFRDVYRAYDGRGARVRASALEHVLRSGRSASVEGH--WLAPHDGQRVPIAEAASPLVD 228

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
              +      I  +    R      ++    L  ++EA+ D I  +     I S N A  
Sbjct: 229 SAGDMTGAVLIVRDISIERERSAASQM----LRRLVEASPDAIVGVGSNRRITSWNPAAR 284

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
           ++FGY           + +           L E +            L   ++   +   
Sbjct: 285 RMFGYDEHAARGCDVAMLIAPRWLRNHP--LPESVPDMREPIENVDVLCVRQDGGRMRAT 342

Query: 543 IIIKKLPFSSCYSL----TMHDISEWKQEKNK-------LSHAKKIAEKESSHKSDFLAR 591
           +    +       +    T+ D  E ++ + +          A++ A+  +  K + LA 
Sbjct: 343 MSASPVFDERDACIALSLTLRDTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLAT 402

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           VSHE+RTPL  I G+ EV++N   G L      +  + IDRS   +  +V D+LD S + 
Sbjct: 403 VSHELRTPLNVIYGWIEVLRNPVDGAL----QQQAIDAIDRSARSLSRMVGDILDASSLA 458

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
           +GK+ L   PV L   V++    +   A    I +    A     +  D   ++Q+  N+
Sbjct: 459 TGKLRLDAMPVDLVRIVNDVTGALGAAAQADGIALSVECALATCIVSGDGERLRQMLSNL 518

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           LSNA  FTP GG++ +S       +  L V DTG G++   L    + F +   +     
Sbjct: 519 LSNAFKFTPRGGRVTVSLERHD-AQAKLTVADTGQGISPEFLPHVFEAFRRAEGAPASPR 577

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFP 809
            G GLGL + + + + + GK    S    +GT   I  P
Sbjct: 578 RGLGLGLSIVRHIAELHGGKVEAASAGKNRGTTFAITLP 616



 Score = 65.4 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/225 (12%), Positives = 54/225 (24%), Gaps = 5/225 (2%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK---RQNTWYGK 146
           D HG L  ++      IG  A  + G+   DV               L+   R       
Sbjct: 145 DRHGMLTYMNPSAAALIGCDATAVRGLPFRDVYRAYDGRGARVRASALEHVLRSGRSASV 204

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
              W        VPI  AA P+     + +G     IV    ++ +  A  + L +    
Sbjct: 205 EGHWLAPHDGQRVPIAEAASPLVDSAGDMTGA--VLIVRDISIERERSAASQMLRRLVEA 262

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
             +   G  S  +      + +    +     +   +    A +          +    E
Sbjct: 263 SPDAIVGVGSNRRITSWNPAARRMFGYDEHAARGCDVAMLIAPRWLRNHPLPESVPDMRE 322

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
                       +  +         + +                 
Sbjct: 323 PIENVDVLCVRQDGGRMRATMSASPVFDERDACIALSLTLRDTGE 367


>gi|327542393|gb|EGF28876.1| multi-sensor hybrid histidine kinase [Rhodopirellula baltica WH47]
          Length = 993

 Score =  333 bits (855), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 104/364 (28%), Positives = 185/364 (50%), Gaps = 13/364 (3%)

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
            + L+  + G+ ++N +G IL TNR +++L      D++ K       Q           
Sbjct: 186 ENALDTITVGLVLLNSKGRILFTNRRLNQLLSQESADLMGKKIDDLEWQMIADTGAVLPW 245

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA 574
           E    +    +++I        ++L+  +    +     Y +T  DI+  ++ K  L+ A
Sbjct: 246 EEAKQNDDSVMDRILQF-DNNGRMLTFSVNCTPI-AGQGYLVTFEDITLIEENKVALAKA 303

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
           +  AE  ++ KSDFLA +SHEIRTPL A++GF++V++            +++ N I RSG
Sbjct: 304 RDAAENANAAKSDFLANMSHEIRTPLNAVLGFTDVLRRGLVS--NGDEAVDHLNMIHRSG 361

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
             +L+++ND+LD+SKIESG +       SLD+ V++  + +++ A+E+ + ++  F   I
Sbjct: 362 AHLLELINDILDLSKIESGHLQTETIDTSLDDIVTDVANTLKVKADEQNLALKVDFRTAI 421

Query: 695 PR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEE-------VILRVRDTG 745
           PR I +D   ++Q+  N++ NAI FT SG   I+ S   T +         + + + DTG
Sbjct: 422 PRTIQSDPTRLRQVVTNLVGNAIKFTESGSVSIVTSLLKTPSNALEGYDPIIRVDIIDTG 481

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +GMT  +  K    F Q  +S   +  GTGLGL +++ + +A  G   + S    G+   
Sbjct: 482 IGMTPDQQAKIFDSFVQADSSTTRKFGGTGLGLSISRRLAEAMGGSLTVHSEVGIGSTFR 541

Query: 806 IIFP 809
           +  P
Sbjct: 542 VELP 545


>gi|167644961|ref|YP_001682624.1| multi-sensor hybrid histidine kinase [Caulobacter sp. K31]
 gi|167347391|gb|ABZ70126.1| multi-sensor hybrid histidine kinase [Caulobacter sp. K31]
          Length = 832

 Score =  333 bits (855), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 107/588 (18%), Positives = 212/588 (36%), Gaps = 29/588 (4%)

Query: 230 PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYF 289
                R+      L          L       + +   +           L         
Sbjct: 110 AWGMRRVVGDEVDLGRVRDMIAFALICGLAAPIATGVLAATLHTAMRGGVLWANIGVWSL 169

Query: 290 GTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFL 349
           G +      +   L+               +     +    +   V+S           +
Sbjct: 170 GDILGLMTITPCLLALVRIRDYLRERPLSASGVASLLLLLAVTVGVFSQNRPLLFVIPPV 229

Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
           +L     ++ +  A   + +             P+   +S     A   +L         
Sbjct: 230 MLLVAWRLEVLGAALSATLVAVVAVTFTMAGHGPITQLKSGSPDQAIVLQLF-------- 281

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469
                FI    A+             E          +     +   + E   D I   N
Sbjct: 282 LAVAIFISLPVASIQRHRRNMLHSMTE------ANAAVARSEARFRQLAENAQDMIIQSN 335

Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY----LTEILSLDLRQTL 525
             GI+   +     + G+  E+++ +     + +     +       L  + +       
Sbjct: 336 MRGIVQYASPGCLAMTGFTPEEVVGREGMQIVYEEDREAVRAIVIAQLAHLAADIDNGPN 395

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPF-----SSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
                 + K+ +++ L               +  +  + DI+E K  + +L  A+  AE 
Sbjct: 396 RVEYRAARKDGRIIWLESRPTLSRDPLTGKVTGITDIVRDITEHKAMERQLREARNEAEA 455

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            ++ K +FLA +SHE+RTPLT+++GF+ ++ N+   P  +P    + + +   G  +L  
Sbjct: 456 AAAVKGEFLANMSHELRTPLTSVLGFARLVDNE---PDLSPDARRFISRVLSGGKALLTT 512

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILA 699
           +ND+LD SK+E+G++ L  EP +  + + EA+ L  L    + + +R     ++P  +L 
Sbjct: 513 INDILDFSKLEAGQLELKLEPTAPAQLIDEAMDLFSLETEARGVALRAVGLEDLPADLLI 572

Query: 700 DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-VILRVRDTGVGMTNYELEKAMK 758
           D   ++Q+ LN++ NA+ FT  G  I +S  +    E + L V DTG G+   +++   +
Sbjct: 573 DGGRLRQVLLNLIGNAVKFTEVG-TITVSAAYEPAGERLSLSVADTGPGIAPGDVDLLFR 631

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
            F Q+      +  GTGLGL + K +V+A  G+  + S P +G     
Sbjct: 632 RFSQVDAGLTRKHGGTGLGLAICKGLVEAMGGQIGVTSVPGQGACFSF 679



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/368 (10%), Positives = 82/368 (22%), Gaps = 32/368 (8%)

Query: 61  SVSNTNYLDSENTFVFDP-IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLC 119
           S++  N   + +   F              +  G ++  S       G    +++G    
Sbjct: 305 SMTEANAAVARSEARFRQLAENAQDMIIQSNMRGIVQYASPGCLAMTGFTPEEVVGREGM 364

Query: 120 DVSDILHIDPNNHI-----GDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSR-NR 173
            +      +    I       L    +    +            + ++            
Sbjct: 365 QIVYEEDREAVRAIVIAQLAHLAADIDNGPNRVEYRAARKDGRIIWLESRPTLSRDPLTG 424

Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH 233
           + +G     IV             +    +      +K    +    +       S    
Sbjct: 425 KVTGIT--DIVRDITEHKAMERQLREARNEAEAAAAVKGEFLANMSHELRT-PLTSVLGF 481

Query: 234 LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293
            R+ +    L+         + +    LLT+    L    DF  +   Q   K       
Sbjct: 482 ARLVDNEPDLSPDARRFISRVLSGGKALLTTINDIL----DFSKLEAGQLELKLEPTAPA 537

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYA------NPS 347
               E+ +  S             G  L    ++  P    +   G L         N  
Sbjct: 538 QLIDEAMDLFSLETEAR-------GVALRAVGLEDLPADLLI-DGGRLRQVLLNLIGNAV 589

Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
                   +V       G    L         A   V L     + + A       + + 
Sbjct: 590 KFTEVGTITVSAAYEPAGERLSLSVADTGPGIAPGDVDLLFRRFSQVDAGLT----RKHG 645

Query: 408 ENSLAMTF 415
              L +  
Sbjct: 646 GTGLGLAI 653


>gi|320104791|ref|YP_004180382.1| multi-sensor hybrid histidine kinase [Isosphaera pallida ATCC
           43644]
 gi|319752073|gb|ADV63833.1| multi-sensor hybrid histidine kinase [Isosphaera pallida ATCC
           43644]
          Length = 973

 Score =  333 bits (855), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 111/575 (19%), Positives = 214/575 (37%), Gaps = 52/575 (9%)

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
           +L  Q     +       +  F T+                P   A   E   +      
Sbjct: 64  ALLSQTSVLQVAWVARLVESGFDTVLATLLSLAVVWPLVIRPLKRALEVERVKVNQILER 123

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD-------NNA 380
                  + S G +   NPS   +  Y + + +  +             D          
Sbjct: 124 SAEAIVSLDSAGRIVSINPSAARMFGYSASEVVGESFLKLFTFSGQAAQDIKSSLKAATF 183

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
            +     + D+T       +  +       + +                      +  + 
Sbjct: 184 QQVPRGLKKDQTTFPIELSITEVMVEGRRLVTLFVR-------------------DLTEV 224

Query: 441 RINKRKMEIEVMQLCSILEATS-DGIAIINREGIILSTNRAVSKLFGYPVEDILRK-PFT 498
           +  KR+ E  V QL S+L+A +   I   +  G++   N    ++ GY   +++ +    
Sbjct: 225 QNWKRRQEEAVNQLRSVLDAATRFSIVATDAHGVVEVFNTGAERMLGYQASEVIGRMRLD 284

Query: 499 VFLEQNTPSVMNHYLTEILSL------------DLRQTLEKITLGSTKEEKLLSLRIIIK 546
                         L   L                    E+      K+   L + ++  
Sbjct: 285 QLHLPQELREEAQRLETKLGQPIDPIEVLFEPVRRLGFQERTWTYVRKDGGTLLVNLVTT 344

Query: 547 KLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
               S+     Y     D++E  + + ++  A+  A+  +  KS+FLA +SHEIRTP+T+
Sbjct: 345 PRRDSAGRIVGYVGIADDVTEQVRYQEEIRRARDRADAANRAKSEFLASMSHEIRTPMTS 404

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           I+G ++++       L   R  E    I  +G  +L I+ND+LD++KIE+GK+ +   P 
Sbjct: 405 ILGHADIL---NLPDLTPQRLAEARGAIQAAGRHLLRIINDILDLAKIEAGKLPMEILPC 461

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPS 721
                  E ++ +++ A  + + +    A  +P +I  D   ++Q+  N++ NAI FT  
Sbjct: 462 DPWTLAREVVAGLRINATRRELALTLEAAGPLPKQIQTDPNRLRQVLYNLVGNAIKFTEK 521

Query: 722 GGQIIISTTHTSNE-EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
           GG + +  +   +   +   V DTGVGMT  ++ K   PF Q    +     GTGLGL +
Sbjct: 522 GG-VRLIVSFDPSACRLSFDVIDTGVGMTPEQVGKLFTPFYQAE--RTHNAGGTGLGLVI 578

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
           +K + +   G   + S   +G++  ++ P+   + 
Sbjct: 579 SKRLAERLGGTIKVQSQRGRGSVFSVLIPVDPAAA 613



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 53/496 (10%), Positives = 130/496 (26%), Gaps = 53/496 (10%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D+ G +  I+    +  G  A +++G     +         +    L  +  T+     
Sbjct: 131 LDSAGRIVSINPSAARMFGYSASEVVGESFLKLFTFSGQAAQDIKSSL--KAATFQQVPR 188

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               + T    PI+L+   +    R          V       + +   +    +   + 
Sbjct: 189 GLKKDQTTF--PIELSITEVMVEGRRLVTL----FVRDLTEVQNWKRRQEEAVNQLRSVL 242

Query: 209 EIKKGHSSVEKEKYDIFS----QQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
           +     S V  + + +              +    +  +     H    L+ E   L T 
Sbjct: 243 DAATRFSIVATDAHGVVEVFNTGAERMLGYQASEVIGRMRLDQLHLPQELREEAQRLETK 302

Query: 265 EESSLPEQED----------------FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
               +   E                 +   +             ++++     Y+   + 
Sbjct: 303 LGQPIDPIEVLFEPVRRLGFQERTWTYVRKDGGTLLVNLVTTPRRDSAGRIVGYVGIADD 362

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
            +    + E      +  D        +              +  +    DI     L+ 
Sbjct: 363 VTEQVRYQEEIRRARDRADAANRAKSEFLASMSHEIRTPMTSILGH---ADILNLPDLTP 419

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
              A       A    +L   +     A      +         +   P+  A +    +
Sbjct: 420 QRLAEARGAIQAAGRHLLRIINDILDLAKIEAGKLPME-----ILPCDPWTLAREVVAGL 474

Query: 429 PQNGIEPEDVDTRINK----RKMEIEVMQLCSILEAT-SDGIAIINREGI--ILSTNRAV 481
             N    E   T        ++++ +  +L  +L     + I    + G+  I+S + + 
Sbjct: 475 RINATRRELALTLEAAGPLPKQIQTDPNRLRQVLYNLVGNAIKFTEKGGVRLIVSFDPSA 534

Query: 482 SKL--------FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLG 531
            +L         G   E + +     +  + T +     L  ++S  L + L        
Sbjct: 535 CRLSFDVIDTGVGMTPEQVGKLFTPFYQAERTHNAGGTGLGLVISKRLAERLGGTIKVQS 594

Query: 532 STKEEKLLSLRIIIKK 547
                 + S+ I +  
Sbjct: 595 QRGRGSVFSVLIPVDP 610


>gi|309790857|ref|ZP_07685401.1| PAS sensor protein [Oscillochloris trichoides DG6]
 gi|308227144|gb|EFO80828.1| PAS sensor protein [Oscillochloris trichoides DG6]
          Length = 899

 Score =  333 bits (855), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 131/722 (18%), Positives = 250/722 (34%), Gaps = 65/722 (9%)

Query: 121 VSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIY-----SRNREF 175
           V      DP+  + + +  ++    +     I+ T+  V    +A  I         +  
Sbjct: 204 VWMPDPDDPDQLVAEYVAGEHAEASRGLRVSIQNTHDLVVRAFSARRIQFEKTPDAAQHG 263

Query: 176 SGFR-GFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKE-KYDIFSQQSPPPH 233
             +R G G+                       LH+   G  +++     +    Q     
Sbjct: 264 DWYREGCGV-----------------MALPMMLHDHVVGVVTLQDPLSVEHLRFQQDLTQ 306

Query: 234 LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293
             +     +L     +        +      E +   ++E      +NQ + +       
Sbjct: 307 GVISQAAIALQNAQLYAKVRSLNVELEQRVEERTRQLQEEKDRLATINQISIEVSSTLDL 366

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY-ANPSFLLLT 352
           ++   +   L      +  A     E+     V +            + +          
Sbjct: 367 DSILNTSLTLVANMCQAEHASIMLTESDDSLLVTRAVYGVPASPGNYIRFPIGSGVAGWV 426

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
             +    +           +            M+             +            
Sbjct: 427 AQQRKGILIDDISTDERWLSIPGGSLRKRHGSMIAVPLLMQGEVLGVISISHRTSGFFHE 486

Query: 413 MTFIPFEK-ANQFPENMPQNGIEPEDVDTRINKRKM----EIEVMQLCSILEATSDGIAI 467
                    A      +    +          + ++    + E  Q+ +IL+  +DG+ +
Sbjct: 487 GHLRLVHACAGPIAIGVNNANLFQMITSEAERRYELLDRQQTEASQIEAILQNLADGVIV 546

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFL-EQNTPSVMNHYLTEILSLDLRQTLE 526
            +  G +L  N A     G  +ED+L       +            LTE+L+  L    +
Sbjct: 547 CDLYGSVLMANEAAGTTLGRTIEDLLLWNLHDIINRYLGSRSPEMPLTELLARPLDALDQ 606

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKES 582
           +    ST +  +  + + +  +       L     + DI+                 +  
Sbjct: 607 RRIFTSTAKVGMRMISMTMGPVLKEDGQLLGALLVVRDITR--------------EIEAD 652

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
             K++F+  +SHE+RTP+TAI GF++++     GPL N    E+ N I  +   ++ ++N
Sbjct: 653 RLKTEFIGTMSHELRTPMTAIKGFTQLLAMGGLGPL-NDTQREFVNTIHSNTERMIALIN 711

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702
           D+LDI+KIESG ++L +  + L E +S  IS VQ   + +   +  S    +P + AD  
Sbjct: 712 DVLDITKIESGSVDLEWRSLHLVEVLSGVISEVQPAVSAREHELTISIPPGMPLVRADAH 771

Query: 703 SVKQIALNILSNAIHFTPSGGQIIIST---------------THTSNEEVILRVRDTGVG 747
            + QI  N+LSNAI +TP GG+I +                        V + +RDTGVG
Sbjct: 772 RLHQILFNLLSNAIKYTPKGGKISVEAYEARADELPDYLRSGVTAEKRYVQVNIRDTGVG 831

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           +   E+ +    F +  N  +I   GTGLGL L K +V+   GK ++ ST  +G+   ++
Sbjct: 832 IDREEIGRIFDRFYRTENPLKIEAGGTGLGLSLVKPLVELLNGKIWVESTVGQGSTFSLL 891

Query: 808 FP 809
            P
Sbjct: 892 LP 893


>gi|311748172|ref|ZP_07721957.1| sensory box histidine kinase/response regulator [Algoriphagus sp.
            PR1]
 gi|126576660|gb|EAZ80908.1| sensory box histidine kinase/response regulator [Algoriphagus sp.
            PR1]
          Length = 1356

 Score =  333 bits (855), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 91/411 (22%), Positives = 173/411 (42%), Gaps = 27/411 (6%)

Query: 430  QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
               +       + ++ ++  +  +  +I+   + G+  ++    +L  N+   ++ GY +
Sbjct: 704  FAQMLVNIQKRKQSEMRLFQQEEKFRNIISNMNLGLLEVDLNEHVLHANQTFCQMAGYEL 763

Query: 490  EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
            ED + +  T  L   +        +E     +  +            +     I      
Sbjct: 764  EDFIGRKATDLLLNESDKEKLLIKSESRKSGVSDSY--ELKYKRPNGEYRWWFISGAPNY 821

Query: 550  FSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
                          DI++ K+ + +L   ++ AEK    K  F A +SHEIRTP+ AI+G
Sbjct: 822  NDKNELIGSIGIHLDITDQKRLEEELIRQREEAEKSKRAKEIFFANMSHEIRTPMNAIVG 881

Query: 606  FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
              E +         N +  +Y   I  S + ++ I+ D+LD+SK+E+GKM +        
Sbjct: 882  MGEQLAKSAL----NDQQNKYIKAIQDSASHLMVIIKDILDLSKLEAGKMTIEAIGFKPK 937

Query: 666  EAVSEAISLVQLYANEKRILI-RTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG 723
              +     +++  A  K +     ++ + I  +L  D   + QI LN+LSNAI FT  G 
Sbjct: 938  NIIEHTFEMMKAKAESKGLDYSILNYDSRINEVLIGDPIRISQILLNLLSNAIKFTEKGK 997

Query: 724  QI----IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
             +     IS    S++E+   V DTG+GM +  +    + + Q   +   +  GTGLGL 
Sbjct: 998  VVLQCHSIS-ETESHQEIKFSVIDTGIGMDDDFVNSNFEKYVQEDTTITRKFGGTGLGLS 1056

Query: 780  LAKAMVDANMGKFYIFSTPAKGTLIEI----------IFPLYDTSHPHDCI 820
            ++K +V    G+  I S    GT++ +            P+ D+S  ++ +
Sbjct: 1057 ISKELVQLMGGQMKIESQKGLGTIVSVNFKLPKGQESDLPVEDSSSINEAL 1107



 Score = 78.5 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 56/481 (11%), Positives = 133/481 (27%), Gaps = 54/481 (11%)

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
            Y    ++L     P  +S E  +                             +      
Sbjct: 94  EYFEDQELLLFLGSPWFSSIEELVSNDLSISDFAALDPLVDLLHLIKNQELVTADLKELI 153

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365
                     +    +    +D      +    G + YAN  +L  T+Y   + I     
Sbjct: 154 ETISHQKESLENLSYVASANLDGI---IYTDEEGYITYANEGYLRQTQYDLSEIIGK--- 207

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCI---AASARLHTIQWNRENSLAMTFIPFEKAN 422
                   +L      +   L +   +          L   + +              ++
Sbjct: 208 -----TPLELGRGEETQKEELKKMLDSFFKKEPYKVELKHYKKDG-TWFWARVNGQAVSD 261

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
           +  E +    +  +  + +I+K K++        +LE + D +   +      S +    
Sbjct: 262 KNGEFLHYFTLVEDVTEEKISKNKIQEFEKTFRQVLEFSGDNVWEHDFRTNKTSFSNKAK 321

Query: 483 KLFGYPVEDI--LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
              G   +    + + +   + Q    ++              + +       ++  +  
Sbjct: 322 NFLGLTFDQSVNVGEVWNSHIHQEDYPILVENDLRYKR-GEISSHQLEYRMLHEDGSIKW 380

Query: 541 LRIIIKKLPFSSC-----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
           ++     +             T  DI+E K  + +L    K      +   D +  VS+ 
Sbjct: 381 VKDRGIVIEKDPQGIPLKIIGTHSDITEQKNAEKELVSLNKKLGSVLNELKDVIWSVSY- 439

Query: 596 IRTP-LTAIIG--FSEVIKNQRFGPLG----------NPRYIEYANYIDRSGNLVLDIVN 642
              P L+ I     +E +       L           +P  +   + I        + + 
Sbjct: 440 ---PDLSGIFFTPSAEDLFELDMDILLEDNSWRSKTIHPDDLHVLDTILEDVQENNEYIQ 496

Query: 643 D--LLDISK-----IESGKMNLHF-EPVSLDEAVSEA------ISLVQLYANEKRILIRT 688
           +  ++  SK      + GK+     +PV ++  + +        +L++     K ILI  
Sbjct: 497 EYRIITPSKKVKWVQDKGKLIFEDGKPVRINGILVDISERKKTEALLENQEKLKNILIDI 556

Query: 689 S 689
           S
Sbjct: 557 S 557



 Score = 68.1 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 45/387 (11%), Positives = 111/387 (28%), Gaps = 30/387 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR---QNTWYG 145
            D  GY+   +E   +       ++IG    ++           +  +L     +  +  
Sbjct: 180 TDEEGYITYANEGYLRQTQYDLSEIIGKTPLELGRGEETQKE-ELKKMLDSFFKKEPYKV 238

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +   +  +GT  +    +    +  +N EF  +  F +V     +   +   +  +K F 
Sbjct: 239 ELKHYKKDGT--WFWARVNGQAVSDKNGEFLHY--FTLVEDVTEEKISKNKIQEFEKTFR 294

Query: 206 HLHEIKKGHSS--VEKEKYDIFSQQSPPPHLRMKNK---VSSLTEYYAHKDD--VLKTEK 258
            + E    +      +     FS ++        ++   V  +   + H++D  +L    
Sbjct: 295 QVLEFSGDNVWEHDFRTNKTSFSNKAKNFLGLTFDQSVNVGEVWNSHIHQEDYPILVEND 354

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYF-----GTLQNNSKESFEYLSHRNHPSLSA 313
                 E SS   +      + +    K               K    +       +   
Sbjct: 355 LRYKRGEISSHQLEYRMLHEDGSIKWVKDRGIVIEKDPQGIPLKIIGTHSDITEQKNAEK 414

Query: 314 YFDEGENLTPETVDKCPIPFF--VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
                       +++     +   Y   +  +  PS   L +      +E     S  + 
Sbjct: 415 ELVSLNKKLGSVLNELKDVIWSVSYPDLSGIFFTPSAEDLFELDMDILLEDNSWRSKTIH 474

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
              L   + I        D        + + I    +    +         +  + +  N
Sbjct: 475 PDDLHVLDTILE------DVQENNEYIQEYRIITPSKKVKWVQDKGKLIF-EDGKPVRIN 527

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSIL 458
           GI  +  + +  +  +E +  +L +IL
Sbjct: 528 GILVDISERKKTEALLENQ-EKLKNIL 553



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/142 (11%), Positives = 37/142 (26%), Gaps = 5/142 (3%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQNTWYGK 146
            +D + ++   ++   +  G      IG +  D+           I  +  K   +   +
Sbjct: 741 EVDLNEHVLHANQTFCQMAGYELEDFIGRKATDLLLNESDKEKLLIKSESRKSGVSDSYE 800

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                  G   Y    ++  P Y+   E  G  G  +               R  ++   
Sbjct: 801 LKYKRPNGE--YRWWFISGAPNYNDKNELIGSIGIHL--DITDQKRLEEELIRQREEAEK 856

Query: 207 LHEIKKGHSSVEKEKYDIFSQQ 228
               K+   +    +       
Sbjct: 857 SKRAKEIFFANMSHEIRTPMNA 878


>gi|297616558|ref|YP_003701717.1| multi-sensor signal transduction histidine kinase [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297144395|gb|ADI01152.1| multi-sensor signal transduction histidine kinase [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 592

 Score =  333 bits (855), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 103/553 (18%), Positives = 202/553 (36%), Gaps = 37/553 (6%)

Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN---LTPETVD 327
            +              +    L ++ +      +H   P +    +  +        T+ 
Sbjct: 71  AEVAGKDTQARITIVARTGEVLADSRQNPKTMANHGARPEVRGALNGEKTSIVRYSSTLH 130

Query: 328 KCPI--PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
           +  I     +   G +              +++ +       TLL     +  + +    
Sbjct: 131 RYMIYAAVPIVKKGQIEGVVRV---SLPLAAINSLLRQLWAVTLLAMLAAALLSVLVGWW 187

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
           L +     I     +       +    +      + +     +    +            
Sbjct: 188 LAKRLTKPIEEITEVAQAMAEGD----LKRRIRGQRDMGEVAILAQAMNRMVEKLDEKMN 243

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           ++     +L ++L  T +G+  I + G IL  N A  +L     +D+  K          
Sbjct: 244 ELAATKNRLETVLTNTVNGVIFIGQGGDILYINPAARRLLDVGEKDVTGKHHVEVTRSYA 303

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISEW 564
            +    ++ +       Q L+K  +      K +   I+  K         + ++DISE 
Sbjct: 304 LADSVDFVFQ-----EGQPLKKEFVLHNLGGKAVETNIVPVKQEAGLQGVLVVLNDISEL 358

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           K+ +                + DF+A VSHE+RTPL AI GF+E +  +      NP   
Sbjct: 359 KRLET--------------IRKDFVANVSHELRTPLAAISGFAETLMMENS---DNPAVQ 401

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           ++A  I      +  +VN LL +SK+ES    L  E   L + +   +   +   +EKR+
Sbjct: 402 QFARIIYDEAQRMTRMVNSLLQLSKLESVGAELDQEEFDLGQCLDTVLQGFEPRLSEKRL 461

Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744
            +      N   + AD   + Q+ +N+L NA  F+P  G + +  T     E+++ V D 
Sbjct: 462 KVEVELPENGLVVRADRDRIVQVLMNLLDNATRFSPPDGTVTVRGTLLP-GEILVEVIDE 520

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G G+   E  +  + F ++  ++   G+G GLGL + K +V+A+ G+  + S P  G++ 
Sbjct: 521 GPGIPEEEAARVFERFYRVDKARTR-GQGVGLGLAIVKHIVEAHGGRVGVRSVPGNGSVF 579

Query: 805 EIIFPLYDTSHPH 817
               P    +  H
Sbjct: 580 YFSLPGKRATDEH 592



 Score = 39.2 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 29/241 (12%), Positives = 72/241 (29%), Gaps = 14/241 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           I   G +  I+    + +      + G    +V+    +   + +  + +       +  
Sbjct: 266 IGQGGDILYINPAARRLLDVGEKDVTGKHHVEVTRSYAL--ADSVDFVFQEGQPLKKEFV 323

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           L  + G      ++   +P+        G +G  +V +N +    R    R D   +  H
Sbjct: 324 LHNLGGKA----VETNIVPVKQEA----GLQGVLVV-LNDISELKRLETIRKDFVANVSH 374

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           E++   +++      +  + S  P ++   ++         +      +   L +     
Sbjct: 375 ELRTPLAAISGFAETLMMENSDNPAVQQFARIIYDEAQRMTRMVNSLLQLSKLESVGAEL 434

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
             E+ D            Q F    +  +   E     N   + A  D    +    +D 
Sbjct: 435 DQEEFDLGQCLDTVL---QGFEPRLSEKRLKVEVELPENGLVVRADRDRIVQVLMNLLDN 491

Query: 329 C 329
            
Sbjct: 492 A 492


>gi|167899886|ref|ZP_02487287.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei 7894]
          Length = 771

 Score =  333 bits (855), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 101/501 (20%), Positives = 175/501 (34%), Gaps = 27/501 (5%)

Query: 322 TPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
               +        V   HG L Y NPS   L        +                    
Sbjct: 129 YETLLQSLTQGVVVSDRHGMLTYMNPSAAALIGC-DATAVRGLPFRDVYRAYDGRGARVR 187

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
              +          +       +  +    + +        +   +      I  +    
Sbjct: 188 ASALEHVLRSGRSASVEGH--WLAPHDGQRVPIAEAASPLVDSAGDMTGAVLIVRDISIE 245

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           R      ++    L  ++EA+ D I  +     I S N A  ++FGY           + 
Sbjct: 246 RERSAASQM----LRRLVEASPDAIVGVGSNRRITSWNPAARRMFGYDEHAARGCDVAML 301

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL---- 556
           +           L E +            L   ++   +   +    +       +    
Sbjct: 302 IAPRWLRNHP--LPESVPDMREPIENVDVLCVRQDGGRMRATMSASPVFDERDACIALSL 359

Query: 557 TMHDISEWKQEKNK-------LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
           T+ D  E ++ + +          A++ A+  +  K + LA VSHE+RTPL  I G+ EV
Sbjct: 360 TLRDTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLATVSHELRTPLNVIYGWIEV 419

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           ++N   G L      +  + IDRS   +  +V D+LD S + +GK+ L   PV L   V+
Sbjct: 420 LRNPVDGAL----QQQAIDAIDRSARSLSRMVGDILDASSLATGKLRLDAMPVDLVRIVN 475

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
           +    +   A    I +    A     +  D   ++Q+  N+LSNA  FTP GG++ +S 
Sbjct: 476 DVTGALGAAAQADGIALSVECALGTCIVSGDGERLRQMLSNLLSNAFKFTPRGGRVTVSL 535

Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
                 +  L V DTG G++   L    + F +   +      G GLGL + + + + + 
Sbjct: 536 ERHD-AQAKLTVADTGQGISPEFLPHVFEAFRRAEGAPASPRRGLGLGLSIVRHIAELHG 594

Query: 790 GKFYIFST-PAKGTLIEIIFP 809
           GK    S    +GT   I  P
Sbjct: 595 GKVEAASAGKNRGTTFAITLP 615



 Score = 65.8 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/225 (12%), Positives = 54/225 (24%), Gaps = 5/225 (2%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK---RQNTWYGK 146
           D HG L  ++      IG  A  + G+   DV               L+   R       
Sbjct: 144 DRHGMLTYMNPSAAALIGCDATAVRGLPFRDVYRAYDGRGARVRASALEHVLRSGRSASV 203

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
              W        VPI  AA P+     + +G     IV    ++ +  A  + L +    
Sbjct: 204 EGHWLAPHDGQRVPIAEAASPLVDSAGDMTGA--VLIVRDISIERERSAASQMLRRLVEA 261

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
             +   G  S  +      + +    +     +   +    A +          +    E
Sbjct: 262 SPDAIVGVGSNRRITSWNPAARRMFGYDEHAARGCDVAMLIAPRWLRNHPLPESVPDMRE 321

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
                       +  +         + +                 
Sbjct: 322 PIENVDVLCVRQDGGRMRATMSASPVFDERDACIALSLTLRDTGE 366


>gi|146309198|ref|YP_001189663.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp]
 gi|145577399|gb|ABP86931.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp]
          Length = 783

 Score =  333 bits (855), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 130/580 (22%), Positives = 234/580 (40%), Gaps = 24/580 (4%)

Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302
           L E  A     L  ++   L S  S+L   +       N     Q  G+L+         
Sbjct: 66  LAEAAASVRGYLLVQRSDFLPSYRSALERIDSTLRRLDNDIRDPQMRGSLERLRPLIVIK 125

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEI 362
           L         A  D+   +T   VD             +         L   ++ +    
Sbjct: 126 LEGLEQLKALASSDDRAAMTRILVDN--KHVLDALRQEIQQMLEREQTLLDERNAEA--- 180

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
           +   S +L A  L+    +   +      +           +  R  +L    IP     
Sbjct: 181 SAVRSRMLLATGLAAMFGVLGALFAVVLLSTGIVHRVQQVERNARRLALGQPLIPQ-GPA 239

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNRAV 481
                     +E         +R +     +L  I++   + GI  ++  G + S N   
Sbjct: 240 ADEIGQLAASLEEAGQLLAERERALRDNEERLRLIIDGVKEYGIFGLDPSGHVTSWNTGA 299

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
            ++ GY   DIL + F++F          +    + +       E+      ++  L   
Sbjct: 300 ERIKGYSEADILGRHFSLFYPPQARDTAPYL--ALQAATREGRYEEEAWRQRRDGSLFWA 357

Query: 542 RIIIKKLPFS----SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
            ++I     +      +S    DI++ +  +  L  A++ AE  S  KS+FL+R+SHE+R
Sbjct: 358 NVVITAQRDASGTLRGFSKITRDITDRRNAEAALRTAREEAENASRAKSEFLSRMSHELR 417

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TPL +I+GF+++++  R  P    +       I R+G  +L ++N++LDI++IESG++ L
Sbjct: 418 TPLNSILGFAQLLEMDRGTPAQQAQVRH----ILRAGRHLLGLINEVLDIARIESGRLAL 473

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR---ILADLRSVKQIALNILSN 714
             EP+ L   + E   L+   A+   I +R      +P    + AD + + Q+ LN+LSN
Sbjct: 474 SPEPLPLRPLLQEVSLLLSPQADSADIRLR--LPEELPAELCVQADRQRLVQVLLNLLSN 531

Query: 715 AIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           AI +   GG + +      ++ V L V D G G+   +LE+   PF ++  +     EGT
Sbjct: 532 AIKYNHPGGHVEVRVQ-ADSDTVTLSVIDNGPGIAAEDLERLFIPFERLGAAAS-EVEGT 589

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           GLGL L+K++++   G   + STP +G+   +  P     
Sbjct: 590 GLGLALSKSLLEQMDGSLGVHSTPGEGSTFSLTLPRAQVH 629



 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/307 (10%), Positives = 70/307 (22%), Gaps = 14/307 (4%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + +D  G++   +    +  G     ++G            D   ++      +     
Sbjct: 283 IFGLDPSGHVTSWNTGAERIKGYSEADILGRHFSLFYPPQARDTAPYLALQAATREG-RY 341

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +   W           ++        +    GF    I        +  A  +   ++  
Sbjct: 342 EEEAWRQRRDGSLFWANVVITAQRDASGTLRGFSK--ITRDITDRRNAEAALRTAREEAE 399

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
           +    K    S    +       S     ++           A    +L+  ++ L    
Sbjct: 400 NASRAKSEFLSRMSHELRT-PLNSILGFAQLLEMDRGTPAQQAQVRHILRAGRHLLGLIN 458

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE-------G 318
           E     + +   + L+           + +   S +  S      L              
Sbjct: 459 EVLDIARIESGRLALSPEPLPLRPLLQEVSLLLSPQADSADIRLRLPEELPAELCVQADR 518

Query: 319 ENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIE---IAGGLSTLLDAPKL 375
           + L    ++           G            T   SV D      A  L  L    + 
Sbjct: 519 QRLVQVLLNLLSNAIKYNHPGGHVEVRVQADSDTVTLSVIDNGPGIAAEDLERLFIPFER 578

Query: 376 SDNNAIK 382
               A +
Sbjct: 579 LGAAASE 585


>gi|291279601|ref|YP_003496436.1| hypothetical protein DEFDS_1212 [Deferribacter desulfuricans SSM1]
 gi|290754303|dbj|BAI80680.1| hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 1099

 Score =  333 bits (855), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 96/385 (24%), Positives = 186/385 (48%), Gaps = 21/385 (5%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           +++  +  +L  I E+  + I ++N  G ++  N+   ++FGY   +++ K  ++F+   
Sbjct: 324 KELLEKEERLSMIFESAPNAILLVNENGELILANKRAEEVFGYKENELIGKKLSLFIPDR 383

Query: 505 TPSVMNHYLTEILSLDLRQTLEK-ITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHD 560
                 +YL   ++ ++   ++        KE K+L + I I K+            + D
Sbjct: 384 FRKPYLNYLINEMNDNVNYPIKINDIQLKNKEGKILYVDISIGKIQNKENKVELIFIIKD 443

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I++ K  + +    +  AE+ +  KS+ LA +SHEIRTPL A+  F ++++ +++    +
Sbjct: 444 ITDRKLLEKERLK-RIAAEEANKVKSNLLATISHEIRTPLNAVTTFLDIMEERKYLKTED 502

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
                       S N++++++ND+LD+SKIESG   L    +SL + + +  S+ +    
Sbjct: 503 ---KYLLEKTKYSSNILINLINDVLDLSKIESGNFKLVKNEISLIDLIIKITSIFENSLL 559

Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE--- 736
           EK++ +      ++P  I  D   + QI +N++ NAI FT +G  I++S       +   
Sbjct: 560 EKKLKMYIDIPPDVPDKIKTDDLRLSQILINLIGNAIKFTDNG-YILLSVNLEKRNDKDI 618

Query: 737 -VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            + + V+DTG+G+    ++    PF Q       +  GTGLGL + K +V+   G   I 
Sbjct: 619 FLKITVKDTGIGIEEKNIKSIFLPFIQENVGDNKKYGGTGLGLAIVKLIVEKMGGTIKIE 678

Query: 796 STPAKGTLIEIIFPLYDTSHPHDCI 820
           S   KG+      P+       +CI
Sbjct: 679 SKKGKGSKFIFDIPV-------ECI 696


>gi|167851254|ref|ZP_02476762.1| sensor kinase/response regulator fusion protein [Burkholderia
           pseudomallei B7210]
          Length = 757

 Score =  333 bits (855), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 104/519 (20%), Positives = 180/519 (34%), Gaps = 27/519 (5%)

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEI 362
           S R + +L              +        V   HG L Y NPS   L        +  
Sbjct: 97  SRRANDALRRREAGARRYYETLLQSLTQGVVVSDRHGMLTYMNPSAAALIGC-DATAVRG 155

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
                                +          +       +  +    + +        +
Sbjct: 156 LPFRDVYRAYDGRGARVRASALEHVLRSGRSASVEGH--WLAPHDGQRVPIAEAASPLVD 213

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
              +      I  +    R      ++    L  ++EA+ D I  +     I S N A  
Sbjct: 214 SAGDMTGAVLIVRDISIERERSAASQM----LRRLVEASPDAIVGVGSNRRITSWNPAAR 269

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
           ++FGY           + +           L E +            L   ++   +   
Sbjct: 270 RMFGYDEHAARGCDVAMLIAPRWLRNHP--LPESVPDMREPIENVDVLCVRQDGGRMRAT 327

Query: 543 IIIKKLPFSSCYSL----TMHDISEWKQEKNK-------LSHAKKIAEKESSHKSDFLAR 591
           +    +       +    T+ D  E ++ + +          A++ A+  +  K + LA 
Sbjct: 328 MSASPVFDERDACIALSLTLRDTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLAT 387

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           VSHE+RTPL  I G+ EV++N   G L      +  + IDRS   +  +V D+LD S + 
Sbjct: 388 VSHELRTPLNVIYGWIEVLRNPVDGAL----QQQAIDAIDRSARSLSRMVGDILDASSLA 443

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
           +GK+ L   PV L   V++    +   A    I +    A     +  D   ++Q+  N+
Sbjct: 444 TGKLRLDAMPVDLVRIVNDVTGALGAAAQADGIALSVECALGTCIVSGDGERLRQMLSNL 503

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           LSNA  FTP GG++ +S       +  L V DTG G++   L    + F +   +     
Sbjct: 504 LSNAFKFTPRGGRVTVSLERHD-AQAKLTVADTGQGISPEFLPHVFEAFRRAEGAPASPR 562

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFP 809
            G GLGL + + + + + GK    S    +GT   I  P
Sbjct: 563 RGLGLGLSIVRHIAELHGGKVEAASAGKNRGTTFAITLP 601



 Score = 65.0 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 28/225 (12%), Positives = 54/225 (24%), Gaps = 5/225 (2%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK---RQNTWYGK 146
           D HG L  ++      IG  A  + G+   DV               L+   R       
Sbjct: 130 DRHGMLTYMNPSAAALIGCDATAVRGLPFRDVYRAYDGRGARVRASALEHVLRSGRSASV 189

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
              W        VPI  AA P+     + +G     IV    ++ +  A  + L +    
Sbjct: 190 EGHWLAPHDGQRVPIAEAASPLVDSAGDMTGA--VLIVRDISIERERSAASQMLRRLVEA 247

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
             +   G  S  +      + +    +     +   +    A +          +    E
Sbjct: 248 SPDAIVGVGSNRRITSWNPAARRMFGYDEHAARGCDVAMLIAPRWLRNHPLPESVPDMRE 307

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
                       +  +         + +                 
Sbjct: 308 PIENVDVLCVRQDGGRMRATMSASPVFDERDACIALSLTLRDTGE 352


>gi|167829786|ref|ZP_02461257.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei 9]
          Length = 766

 Score =  333 bits (855), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 104/519 (20%), Positives = 181/519 (34%), Gaps = 27/519 (5%)

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEI 362
           S R + +L        +     +        V   HG L Y NPS   L        +  
Sbjct: 108 SRRANDALRRREAGARHYYETLLQSLTQGVVVSDRHGMLTYMNPSAAALIGC-DATAVRG 166

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
                                +          +       +  +    + +        +
Sbjct: 167 LPFRDVYRAYDGRGARVRASALEHVLRSGRSASVEGH--WLAPHDGQRVPIAEAASPLVD 224

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
              +      I  +    R      ++    L  ++EA+ D I  +     I S N A  
Sbjct: 225 SAGDMTGAVLIVRDISIERERSAASQM----LRRLVEASPDAIVGVGSNRRITSWNPAAR 280

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
           ++FGY           + +           L E +            L   ++   +   
Sbjct: 281 RMFGYDEHAARGCDVAMLIAPRWLRNHP--LPESVPDMREPIENVDVLCVRQDGGRMRAT 338

Query: 543 IIIKKLPFSSCYSL----TMHDISEWKQEKNK-------LSHAKKIAEKESSHKSDFLAR 591
           +    +       +    T+ D  E ++ + +          A++ A+  +  K + LA 
Sbjct: 339 MSASPVFDERDACIALSLTLRDTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLAT 398

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           VSHE+RTPL  I G+ EV++N   G L      +  + IDRS   +  +V D+LD S + 
Sbjct: 399 VSHELRTPLNVIYGWIEVLRNPVDGAL----QQQAIDAIDRSARSLSRMVGDILDASSLA 454

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
           +GK+ L   PV L   V++    +   A    I +    A     +  D   ++Q+  N+
Sbjct: 455 TGKLRLDAMPVDLVRIVNDVTGALGAAAQADGIALSVECALATCIVSGDGERLRQMLSNL 514

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           LSNA  FTP GG++ +S       +  L V DTG G++   L    + F +   +     
Sbjct: 515 LSNAFKFTPRGGRVTVSLERHD-AQAKLTVADTGQGISPEFLPHVFEAFRRAEGAPASPR 573

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFP 809
            G GLGL + + + + + GK    S    +GT   I  P
Sbjct: 574 RGLGLGLSIVRHIAELHGGKVEAASAGKNRGTTFAITLP 612



 Score = 65.4 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/225 (12%), Positives = 54/225 (24%), Gaps = 5/225 (2%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK---RQNTWYGK 146
           D HG L  ++      IG  A  + G+   DV               L+   R       
Sbjct: 141 DRHGMLTYMNPSAAALIGCDATAVRGLPFRDVYRAYDGRGARVRASALEHVLRSGRSASV 200

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
              W        VPI  AA P+     + +G     IV    ++ +  A  + L +    
Sbjct: 201 EGHWLAPHDGQRVPIAEAASPLVDSAGDMTGA--VLIVRDISIERERSAASQMLRRLVEA 258

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
             +   G  S  +      + +    +     +   +    A +          +    E
Sbjct: 259 SPDAIVGVGSNRRITSWNPAARRMFGYDEHAARGCDVAMLIAPRWLRNHPLPESVPDMRE 318

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
                       +  +         + +                 
Sbjct: 319 PIENVDVLCVRQDGGRMRATMSASPVFDERDACIALSLTLRDTGE 363


>gi|226199333|ref|ZP_03794893.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei Pakistan 9]
 gi|225928740|gb|EEH24767.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei Pakistan 9]
          Length = 769

 Score =  333 bits (855), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 104/519 (20%), Positives = 181/519 (34%), Gaps = 27/519 (5%)

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEI 362
           S R + +L        +     +        V   HG L Y NPS   L        +  
Sbjct: 111 SRRANDALRRREAGARHYYETLLQSLTQGVVVSDRHGMLTYMNPSAAALIGC-DATAVRG 169

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
                                +          +       +  +    + +        +
Sbjct: 170 LPFRDVYRAYDGRGARVRASALEHVLRSGRSASVEGH--WLAPHDGQRVPIAEAASPLVD 227

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
              +      I  +    R      ++    L  ++EA+ D I  +     I S N A  
Sbjct: 228 SAGDMTGAVLIVRDISIERERSAASQM----LRRLVEASPDAIVGVGSNRRITSWNPAAR 283

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
           ++FGY           + +           L E +            L   ++   +   
Sbjct: 284 RMFGYDEHAARGCDVAMLIAPRWLRNHP--LPESVPDMREPIENVDVLCVRQDGGRMRAT 341

Query: 543 IIIKKLPFSSCYSL----TMHDISEWKQEKNK-------LSHAKKIAEKESSHKSDFLAR 591
           +    +       +    T+ D  E ++ + +          A++ A+  +  K + LA 
Sbjct: 342 MSASPVFDERDACIALSLTLRDTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLAT 401

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           VSHE+RTPL  I G+ EV++N   G L      +  + IDRS   +  +V D+LD S + 
Sbjct: 402 VSHELRTPLNVIYGWIEVLRNPVDGAL----QQQAIDAIDRSARSLSRMVGDILDASSLA 457

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
           +GK+ L   PV L   V++    +   A    I +    A     +  D   ++Q+  N+
Sbjct: 458 TGKLRLDAMPVDLVRIVNDVTGALGAAAQADGIALSVECALATCIVSGDGERLRQMLSNL 517

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           LSNA  FTP GG++ +S       +  L V DTG G++   L    + F +   +     
Sbjct: 518 LSNAFKFTPRGGRVTVSLERHD-AQAKLTVADTGQGISPEFLPHVFEAFRRAEGAPASPR 576

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFP 809
            G GLGL + + + + + GK    S    +GT   I  P
Sbjct: 577 RGLGLGLSIVRHIAELHGGKVEAASAGKNRGTTFAITLP 615



 Score = 65.4 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/225 (12%), Positives = 54/225 (24%), Gaps = 5/225 (2%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK---RQNTWYGK 146
           D HG L  ++      IG  A  + G+   DV               L+   R       
Sbjct: 144 DRHGMLTYMNPSAAALIGCDATAVRGLPFRDVYRAYDGRGARVRASALEHVLRSGRSASV 203

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
              W        VPI  AA P+     + +G     IV    ++ +  A  + L +    
Sbjct: 204 EGHWLAPHDGQRVPIAEAASPLVDSAGDMTGA--VLIVRDISIERERSAASQMLRRLVEA 261

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
             +   G  S  +      + +    +     +   +    A +          +    E
Sbjct: 262 SPDAIVGVGSNRRITSWNPAARRMFGYDEHAARGCDVAMLIAPRWLRNHPLPESVPDMRE 321

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
                       +  +         + +                 
Sbjct: 322 PIENVDVLCVRQDGGRMRATMSASPVFDERDACIALSLTLRDTGE 366


>gi|300777936|ref|ZP_07087794.1| PAS/PAC domain protein [Chryseobacterium gleum ATCC 35910]
 gi|300503446|gb|EFK34586.1| PAS/PAC domain protein [Chryseobacterium gleum ATCC 35910]
          Length = 1302

 Score =  333 bits (854), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 123/653 (18%), Positives = 244/653 (37%), Gaps = 29/653 (4%)

Query: 180 GFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK 239
           G  I           +  +R    F +   +   H             +    +   + +
Sbjct: 270 GINITQRIEEKLKLESSERRFRSFFENAIGLMSMHDMEGNIIAVNEKGRETLQYSAEEVE 329

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE- 298
             +L +    K+  L  +    +                             +    K  
Sbjct: 330 DLNLKDLVPEKNWHLLEQYLERINKNREDFGTMILKTKGGDEVIWMYHNLVEINKEGKPY 389

Query: 299 -SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKS 356
                L+     +L       + +  +T     +  + V    N    + S   + K   
Sbjct: 390 VVSTALNVTERVTLEKDLVNTKKMLEQTSAVAQVGGWEVNLKNNTVIWSQSTREIHKIDK 449

Query: 357 --VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
               D+E A G           ++      +  R+ +  I     L  ++ +    +   
Sbjct: 450 TFQPDLENALGF-------YSENSREKLESLFERAVKEGIPYDEELQLVRNDG--VMIWV 500

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII 474
            +      +        GI  +  + +    ++  +   L S +      +A+++++   
Sbjct: 501 RVKGIPEFEGGVCTRVYGIIQDIDNFKKVYLELARKEAMLQSFVAYVPATVAMLDKDLNY 560

Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
           LS +++    F      ++ +     +  + P        + L+    +  +       K
Sbjct: 561 LSVSKSWKDEFQMNDIRLIGENMFK-ISPDVPDERIKIYRDALAGKAYKNEDMAIEIPGK 619

Query: 535 EE-KLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
           E  +  ++ +    L  +      +   +I+   +   +L +AKK+A+  S  KS+FLA 
Sbjct: 620 ESIQHYNVEVTPWYLSSNVIGGIIVAAQNITTSVKINKELKNAKKMADIASQAKSEFLAN 679

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           +SHEIRTPL  +IGFS+++         N    +Y NYI+ SG  +L I+ND+LD SKIE
Sbjct: 680 MSHEIRTPLNGVIGFSDLLLKTPL----NEIQTQYLNYINESGENLLSIINDILDFSKIE 735

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALN 710
           SGKM L  E  ++ + VS+ I+++   + +K I +  +    +P  I  D   +KQI +N
Sbjct: 736 SGKMELSIEKANVYDIVSQVINVILYQSQKKNIELLLNIEPGLPETIWLDESRLKQILIN 795

Query: 711 ILSNAIHFTPSGGQIIISTTH----TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
           +L NA+ FT  G +I +        + N  +   VRDTG+G+   + +     F Q  +S
Sbjct: 796 LLGNAVKFTQEG-EIELKVEKLSIESKNITLRFSVRDTGIGIPKEKQKHIFNAFTQENSS 854

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL-YDTSHPHD 818
              +  GTGLGL ++  +++       + S   +G+       + Y+ S  H+
Sbjct: 855 ISKKYGGTGLGLTISNNILNYMGSSLSLVSELHQGSTFYFDIQVPYEMSERHE 907


>gi|183222354|ref|YP_001840350.1| putative sensor kinase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|189912401|ref|YP_001963956.1| two component response regulator sensor histidine kinase subunit
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167777077|gb|ABZ95378.1| Sensor histidine kinase of a two component complex [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167780776|gb|ABZ99074.1| Putative sensor kinase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
          Length = 791

 Score =  333 bits (854), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 103/410 (25%), Positives = 178/410 (43%), Gaps = 21/410 (5%)

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR-E 471
           +            +     G   +  + ++ +  ++    +   ILEA+SDG    +   
Sbjct: 230 IWITELTPIEVEGKYKYIVGASKDITEQKLAENALKEYNERYALILEASSDGWFDWDLVN 289

Query: 472 GIILSTNRAVSKLFGYP--VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
             ++ + R   + FG     E++    +   +  +    ++ +L  IL+   R+T E   
Sbjct: 290 NTVIYSRRWWLE-FGNDEKPENVPIDYWQSLIHPDDVGWVSEFLETILAS-QRETFEFTF 347

Query: 530 LGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
               ++     +         +S        +  D++E K+ +  L +AK++AE  +  K
Sbjct: 348 QMKKRKGNFAHVLSKCYIQRDASGNKIRLLGSNTDLTETKKIEYTLRYAKELAEAANIAK 407

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
            +FLA +SHEIRTPL  IIGF+E++ N            EY   I  SG  +L++VN +L
Sbjct: 408 GNFLANMSHEIRTPLNGIIGFTELLLNSPL----QEEQKEYLKNIFFSGKSLLELVNQIL 463

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSV 704
           D SKI+SGK+       +L + V   + L Q+ A  K I +      N+P+ +  D   +
Sbjct: 464 DFSKIDSGKLEFESINTNLIDLVQSTLDLFQVSAASKGIALHIQIDPNLPKYVSLDPLRI 523

Query: 705 KQIALNILSNAIHFTPSGGQIIISTT-HTSNEE---VILRVRDTGVGMTNYELEKAMKPF 760
           +QI  N++ NAI FT  G  + +S      N +   +   V DTG+G+      +    F
Sbjct: 524 RQILSNLIGNAIKFTHEGS-VKVSLQQMERNGDYVTISFEVSDTGIGIDMNVGSRLFDSF 582

Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            Q   S   +  G+GLGL +   ++     K  I S   KG+     FPL
Sbjct: 583 SQADTSITRKYGGSGLGLTITNELLLKMNSKLTIQSELGKGSQFS--FPL 630



 Score = 48.9 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 38/262 (14%), Positives = 76/262 (29%), Gaps = 23/262 (8%)

Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399
            + Y + S   LT Y S   +E             +   +         + +       R
Sbjct: 28  EILYTSRSIQTLTGYDSQYFLENKTSW-----QKFIYKEDRNLIKHALIAIQNNQKFRLR 82

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD----------TRINKRKMEI 449
           L  I    +N   +        NQ   +   +GI  +  D            ++ + + I
Sbjct: 83  LRIITK-NQNIKYIECRGRLIHNQSNGSYRIDGIVTDISDLLPLYHLFQDESVDIKHLLI 141

Query: 450 EVMQLCSILEATSDGIAII----NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           E      I   + D + +I    + + +I   N A  +  G  +  I  K     L +  
Sbjct: 142 ENNM---IFNGSQDSMFLIEVKDDDQYVIRRINLAYERSTGIKLSMIQGKTPIELLGEEL 198

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
              + +   + +      + E+        +  ++    I+             DI+E K
Sbjct: 199 GGTVINNFKKAIQSKKTISYEESFTMPAGTKIWITELTPIEVEGKYKYIVGASKDITEQK 258

Query: 566 QEKNKLSHAKKIAEKESSHKSD 587
             +N L    +         SD
Sbjct: 259 LAENALKEYNERYALILEASSD 280


>gi|310824337|ref|YP_003956695.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309397409|gb|ADO74868.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 1420

 Score =  333 bits (854), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 113/607 (18%), Positives = 224/607 (36%), Gaps = 33/607 (5%)

Query: 216  SVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDF 275
                E       +       MK ++++  +Y     +        L ++ E  +   E+ 
Sbjct: 665  PFRSETASPAKARDAVGVTAMKRELAATRDYLQSLLEEHGRTNDALASTNEELVSGNEEL 724

Query: 276  HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV 335
             ++N    T K+   +         + L  RN        +         +D   IP  +
Sbjct: 725  QSLNEELETAKEELQSTNEELTTVNDELHSRNQ-----ELNLANGDLVNLLDTVDIPVII 779

Query: 336  YSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394
                  +    P    +      D       ++  +  P L    A              
Sbjct: 780  LDLERRIRRFTPKARSIMNVLPSDVGRPLEDITLNVSVPDLGAQVAEVMKT--------- 830

Query: 395  AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
               AR+   +                               +    +    ++E      
Sbjct: 831  ---ARVREFEVQNWTGHWFRMHLRPYKTPENRIDGAILSLVDIDALKHQVSQVEWARDDA 887

Query: 455  CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ-NTPSVMNHYL 513
              I+EA    + +++    +LS N+A  + +     + + K              +   L
Sbjct: 888  TGIVEAVQVPLVVLDGRMRLLSANKAFYQAYPASAAETVAKSLFELSGGAWDVPELRAAL 947

Query: 514  TEILSLDL-RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT-MHDISEWKQEKNKL 571
             ++L+ +   + LE   + +   ++ +SL              L  + DI+E KQ + + 
Sbjct: 948  GQMLAKNTFLEGLELEHVFAHVGKRRMSLSARSVHSRTGLPMLLLAIEDITERKQRELER 1007

Query: 572  -------SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
                     AK+ AE+ +  K  FLA +SHE+RTPL+ ++  +++++    G + + +  
Sbjct: 1008 AELLAHAQQAKEEAERANRAKDQFLATLSHELRTPLSTMLMQAQLLRR---GTMDDAKIK 1064

Query: 625  EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
              +  I+RS  + + +++DLLD+S+I +GK+ + F+ V L   V  A+  V   A  K I
Sbjct: 1065 RASEAIERSTKMQVQLIDDLLDVSRIVTGKLRMEFQTVHLPGVVQAALESVSAQAERKSI 1124

Query: 685  LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744
            L  T+   ++  +  D   ++QI  N+L+NAI F+  G ++ +           L+V D 
Sbjct: 1125 LFETTLDESLGPVSGDPTRLQQIVWNLLANAIKFSAEGQRVSVVLE-RMEGSARLQVSDR 1183

Query: 745  GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTL 803
            G G+    L++    F Q  +S      G GLGL + + +V+ + G     S    +G +
Sbjct: 1184 GAGIEAEALQRIFDRFMQEDSSSTRVFGGLGLGLAIVRHLVELHGGTVQAESPGKGQGAI 1243

Query: 804  IEIIFPL 810
              +I PL
Sbjct: 1244 FTVILPL 1250


>gi|220908950|ref|YP_002484261.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219865561|gb|ACL45900.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 1432

 Score =  333 bits (854), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 120/792 (15%), Positives = 260/792 (32%), Gaps = 66/792 (8%)

Query: 56   DQNQESVSNTNYLDSENTFVFDPIPRT---VRFTWNIDAHGYLKEISEELPKTIGNYAFK 112
            D      +     +SE  F            R+  + D H     +S    +     A  
Sbjct: 541  DVTDRKAAELALQESETKFRRLTENVPGMIYRYVVHPDGHDAFTYVSPRCQEIYELDAET 600

Query: 113  MIGMRLCDVSDILHIDPNNHIGDLLK-RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSR 171
            ++      +  ++  +    +   +               I   +    I   +LP    
Sbjct: 601  IL-QDSRVLWSMVDPEDVPRLEAGIAISAQHLSPFFVEHRIHTPSGMKWIQAISLPERME 659

Query: 172  NREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231
            N +       G++             +  +++     ++ +  S                
Sbjct: 660  NGDLV---WDGLIIEVTEHKRLARALQESEERRRLALDLTETGSWEFDVVTGEAIWSDSH 716

Query: 232  PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS-------EESSLPEQEDFHTINLNQYT 284
             +  M      L   Y    D +  E    + +         + L  +      N     
Sbjct: 717  -YRLMGLMPGELPSNYQTWRDRVHPEDLVWVEAVCSHALATHALLNVEYRVVYPNGTVRW 775

Query: 285  KKQYFGTLQNNSKESFEYLS----HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-G 339
                   + + S ++   L       +  +      E E       +  P+  F     G
Sbjct: 776  VLNKGQGVYDTSSQAVRMLGVMMDITDRKAAEKALIESEARYRLLCESLPVGIFRNDLQG 835

Query: 340  NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399
            N  Y+NP  L +      + +   G    L    +     A    +   +     +    
Sbjct: 836  NNTYSNPKTLEMVGLSFEESL-GDGWAKYLHPNDRDRMYAAWSNFVEQINRGEAASYQLE 894

Query: 400  LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459
            L  + +   +   +      + N   +     G   +    +I ++ +  +     ++++
Sbjct: 895  LRYL-YPNGSLRWVLAQAVPEYNGSGQLTGFVGSAVDITPQKIAEQTIRSQ----AALID 949

Query: 460  ATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL 519
             TSD +++ + +  IL  NRA  K++G+   ++L +  T  L    P+ +      +L+ 
Sbjct: 950  ITSDAMSVRSLDNEILFWNRAAEKIYGWTANEVLGQHATHLLY-RDPAQLEPAFQAVLAE 1008

Query: 520  DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAK 575
            D   + +      TK  + L++      +           +   DI+E KQ +++   A+
Sbjct: 1009 D---SWQGELSAVTKTGQELTIASRWTLMRNGEGQPEAILIVDTDITEKKQLESQFLRAQ 1065

Query: 576  KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
            ++            + ++H++   LT I+  S++++ Q        R  E    I+ +  
Sbjct: 1066 RL-----ESIGTLASGMAHDLNNMLTPILASSQLLQKQ----FPEGRSQEILKIIEANAR 1116

Query: 636  LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695
               D++  +L  ++   GK      P+ +   ++E   + +     K I I     + + 
Sbjct: 1117 RGADLIRQVLTFARGTEGK----RIPLQVKHLLTEIQQICERTFP-KSITIVLDVVSTLS 1171

Query: 696  RILADLRSVKQIALNILSNAIHFTPSGGQIIIST-------------THTSNEEVILRVR 742
             ILAD   + Q+ +N+  NA      GGQ+ +                  S   +++ V 
Sbjct: 1172 TILADPTQLHQVLMNLCVNARDAMSVGGQLQLRLEDFFIDENYARLLALQSGAYIVITVA 1231

Query: 743  DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
            DTG G+    LE+   PF          G+GTGLGL +A+ ++ ++ G   + S    G+
Sbjct: 1232 DTGTGIAPEVLERIFDPFFTTKA----VGQGTGLGLSVAEGIIRSHGGIITVESEVGHGS 1287

Query: 803  LIEIIFPLYDTS 814
              ++  P   TS
Sbjct: 1288 QFKLYLPAATTS 1299



 Score = 98.9 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 34/356 (9%), Positives = 95/356 (26%), Gaps = 21/356 (5%)

Query: 242 SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301
           SL     H DD  + E     T        +  F+  + N       + + +++  + + 
Sbjct: 216 SLWRSRVHPDDRDQIEAAIANTMAAEPNTLEYRFYRKDGNLAWVSTTYTSRRDDELDCWI 275

Query: 302 YLSHRNHPSLSAYFDEGENLTPE----TVDKC-----PIPFFVYSHGNLFYANPSFLLLT 352
             +     +     +     +       +D        +  F        Y +  +  L 
Sbjct: 276 VTAISTDITDRKQLELSLQASERKLNYILDNVVASIVTMRVFADRDWEYDYHSAGYERLF 335

Query: 353 KYKSVDD-IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411
            Y   +  ++    LS +    + +    +          + I  +        +    L
Sbjct: 336 GYSDEELKVDKTLWLSRVFPEDRATILMPLFEAFF-----SEINVTVEYRFYHKDGS--L 388

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471
                 +      P+      +  +  D +  +  ++    +    +EA   G    N  
Sbjct: 389 LWISSSYASERIAPDCWIVTALSHDITDRKTTEIALKESEERFRLAVEAARMGTWDWNIL 448

Query: 472 GIILSTNRAVSKLFGYPVEDILRK--PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
              +  + ++  L G       R+       +  +    +   L   L+      +E   
Sbjct: 449 TNEVIWSESMEGLMGMAPGSFDRRMETVVEMIHPDDLVRVQAALNNSLAHGADYVIEFRF 508

Query: 530 LGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
           +      +    R  + +              D+++ K  +  L  ++    + + 
Sbjct: 509 IKLDGSVRWAMSRGNVLRDGHDRAVRMLGVDVDVTDRKAAELALQESETKFRRLTE 564



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/528 (8%), Positives = 135/528 (25%), Gaps = 35/528 (6%)

Query: 77  DPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMR--LCDVSDILHIDP-NNHI 133
           +    +VRF    D        S    +  G  A + I               D     I
Sbjct: 177 NAAIASVRFF--SDHLFEYDYCSAGNAQVFGYSAQEFISNSSLWRSRVHPDDRDQIEAAI 234

Query: 134 GDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193
            + +  +     +   +  +G   +V           R+ E   +    I          
Sbjct: 235 ANTMAAE-PNTLEYRFYRKDGNLAWVSTTY----TSRRDDELDCWIVTAISTDITDRKQL 289

Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDI--------FSQQSPPPHLRMKNKVSSLTE 245
               +  ++K +++ +         +   D            +    +   + KV     
Sbjct: 290 ELSLQASERKLNYILDNVVASIVTMRVFADRDWEYDYHSAGYERLFGYSDEELKVDKTLW 349

Query: 246 YYAHKDDVLKTEKYPLLTSE--ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303
                 +   T   PL  +   E ++  +  F+  + +       + + +          
Sbjct: 350 LSRVFPEDRATILMPLFEAFFSEINVTVEYRFYHKDGSLLWISSSYASERIAPDCWIVTA 409

Query: 304 ---SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDD 359
                 +  +      E E      V+   +  + ++   N    + S   L        
Sbjct: 410 LSHDITDRKTTEIALKESEERFRLAVEAARMGTWDWNILTNEVIWSESMEGLMGMAPGSF 469

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
                 +  ++    L    A     L       I              +          
Sbjct: 470 DRRMETVVEMIHPDDLVRVQAALNNSLAHGADYVIEFRFI-----KLDGSVRWAMSRGNV 524

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI--AIINREGI--IL 475
             +     +   G++ +  D +  +  ++    +   + E     I   +++ +G     
Sbjct: 525 LRDGHDRAVRMLGVDVDVTDRKAAELALQESETKFRRLTENVPGMIYRYVVHPDGHDAFT 584

Query: 476 STNRAVSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
             +    +++    E IL+  +     ++      +   +           +E      +
Sbjct: 585 YVSPRCQEIYELDAETILQDSRVLWSMVDPEDVPRLEAGIAISAQHLSPFFVEHRIHTPS 644

Query: 534 KEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE 581
             + + ++ +  +       +   + +++E K+    L  +++     
Sbjct: 645 GMKWIQAISLPERMENGDLVWDGLIIEVTEHKRLARALQESEERRRLA 692



 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 38/387 (9%), Positives = 103/387 (26%), Gaps = 20/387 (5%)

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           ++ K  ++         ++    P + +        +    +    +    P+L +E   
Sbjct: 60  DVVKATATCIDLAATSIAEVMTQPVVTVTWSEELTIQRALSRMAEQQVHHLPILDAEHQL 119

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL-SHRNHPSLSAYFDEGENLTPETVD 327
           L        +      ++   G       +              ++  +  + L      
Sbjct: 120 LGIITQEQLLQAIGRPEQWKVGNCLQQQLQWQTQNCDQLERVLQASAINLKDMLNSANAA 179

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
              + FF        Y +     +  Y + + I     L      P   D          
Sbjct: 180 IASVRFFSDHLFEYDYCSAGNAQVFGYSAQEFISN-SSLWRSRVHPDDRDQIEAAIANTM 238

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
            ++   +              N   ++     + +   +      I  +  D +  +  +
Sbjct: 239 AAEPNTLEYRFY-----RKDGNLAWVSTTYTSRRDDELDCWIVTAISTDITDRKQLELSL 293

Query: 448 EIEVMQLCSILEATSDGIAII----NREGIILSTNRAVSKLFGYPVEDI---LRKPFTVF 500
           +    +L  IL+     I  +    +R+      +    +LFGY  E++        +  
Sbjct: 294 QASERKLNYILDNVVASIVTMRVFADRDWEYDYHSAGYERLFGYSDEELKVDKTLWLSRV 353

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---YSLT 557
             ++  +++        S      +        K+  LL +         +      +  
Sbjct: 354 FPEDRATILMPLFEAFFS---EINVTVEYRFYHKDGSLLWISSSYASERIAPDCWIVTAL 410

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSH 584
            HDI++ K  +  L  +++        
Sbjct: 411 SHDITDRKTTEIALKESEERFRLAVEA 437


>gi|283853674|ref|ZP_06370906.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283570945|gb|EFC18973.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 1071

 Score =  333 bits (854), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 126/737 (17%), Positives = 264/737 (35%), Gaps = 51/737 (6%)

Query: 113 MIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNL-------YVPIDLAA 165
           ++   + D+ D+  +D        ++ +        L    G+          +   +AA
Sbjct: 197 LLHRHVSDLLDVAKLDAGR-----METRYARADVARLARFMGSCFESLAREKRIRFTIAA 251

Query: 166 LPIYSRNREFSGFRGFG---IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKY 222
               S   +    R      + +  +   D  A+  RL++    +      +        
Sbjct: 252 PERLSAAVDVEKVRRILQNLLSNAFKFTPDGGAVDVRLEEDGDWVAMTVADNGPGVPPAL 311

Query: 223 D---IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTIN 279
                   +        ++  + L    A +  VL      L  S               
Sbjct: 312 RQAVFERFRQLDGGADRRHGGTGLGLAIAREFAVLHGGDILLDASPGGGASFTVTLPRKA 371

Query: 280 LNQYTKKQYFGTLQNNSKESFEYLSHRN-HPSLSAYFDEGENLTPETVDKCPIPFFVYSH 338
            +          +   ++                A     +      V+  P     Y  
Sbjct: 372 PDGVVVHDAPEEMDAAAEAPVPPEPVPGLRRPARADGPPADAPLVLVVEDNPD-MRDYLG 430

Query: 339 GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398
           G L     + +     + ++   +      ++    + + +    V   R +        
Sbjct: 431 GILGGRYRTAMASNGREGLEA-ALVLHPDLIVSDVMMPEVSGQDMVRELRRNAAMDDVPV 489

Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE--PEDVDTRINKRKMEIEVMQLCS 456
            + T + + E +  +     +     P +  +          D   + R M I   +  +
Sbjct: 490 VMLTAKADDELARTLIAERVQDYLVKPFDARELLARVGRLLADKGRHARNMWISERRFQA 549

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
             E  + GIA+++ +G  L  NR +  + GY  E+++   F               + ++
Sbjct: 550 TFELAAVGIALVSPQGRWLRVNRKLCDIVGYAAEEMVGMTFQKITHPEDLESDMALVQQV 609

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLS 572
           L   +  T  +      K+  ++ + + +  +  ++     +   + DI   K  + +L 
Sbjct: 610 L-GGVTNTYNREKRYIRKDGTVVWINLTVALVRDAAGAPDYFISVVEDIDRRKAIEEQLR 668

Query: 573 HAK--------------KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            +K              + AE  +  KS FLA +SHEIRTPL  ++G  +++K       
Sbjct: 669 LSKDDLERAARQATHLARRAEAANLAKSAFLANMSHEIRTPLNGLLGMMQLLKTTVL--- 725

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
            +   +EYA+   RSG  +  ++ D+LD+S+IE+ +M L   P  L +  +         
Sbjct: 726 -DEEQLEYADMAIRSGGRLTRLLGDILDLSRIEAERMALSLAPFRLADVFAAITETFAPL 784

Query: 679 ANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSN-- 734
             EK + +    A ++P +L  D   V+QI  N+  NA+ FT +G   + +S+  + +  
Sbjct: 785 VREKGLPLACRAAPDVPGVLVGDEMRVRQILFNLTGNAMKFTEAGSVAVEVSSLASPDPG 844

Query: 735 -EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
              ++  V DTGVG+ + +++   +PF Q  +S     +G GLGL +++ + +   G   
Sbjct: 845 QARLLFTVADTGVGIPDDKIDTVGEPFTQADSSYTRDQQGAGLGLTISRQLTELMGGTLT 904

Query: 794 IFSTPAKGTLIEIIFPL 810
           I S P +GT + ++ PL
Sbjct: 905 IESEPGQGTTVYLMLPL 921



 Score =  229 bits (584), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 63/246 (25%), Positives = 111/246 (45%), Gaps = 6/246 (2%)

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            +    +++   +   +  + K+ F A VSHE+RTPLT I+G       +R     +   
Sbjct: 129 LRAANEEITRLYEKTRELDALKTRFFANVSHELRTPLTLILGP----LARRLEACADDAA 184

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
                 ++R+  L+   V+DLLD++K+++G+M   +    +        S  +  A EKR
Sbjct: 185 RADLRVMERNALLLHRHVSDLLDVAKLDAGRMETRYARADVARLARFMGSCFESLAREKR 244

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
           I    +    +   + D+  V++I  N+LSNA  FTP GG + +       + V + V D
Sbjct: 245 IRFTIAAPERLSAAV-DVEKVRRILQNLLSNAFKFTPDGGAVDVRLE-EDGDWVAMTVAD 302

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
            G G+     +   + F Q+      R  GTGLGL +A+     + G   + ++P  G  
Sbjct: 303 NGPGVPPALRQAVFERFRQLDGGADRRHGGTGLGLAIAREFAVLHGGDILLDASPGGGAS 362

Query: 804 IEIIFP 809
             +  P
Sbjct: 363 FTVTLP 368



 Score = 81.2 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 25/248 (10%), Positives = 63/248 (25%), Gaps = 14/248 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ--NTWYGK 146
           +   G    ++ +L   +G  A +M+GM    ++    ++ +  +   +     NT+  +
Sbjct: 561 VSPQGRWLRVNRKLCDIVGYAAEEMVGMTFQKITHPEDLESDMALVQQVLGGVTNTYNRE 620

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                 +GT   V I+L    +         F    +V             +        
Sbjct: 621 KRYIRKDGT--VVWINLTVALVRDAAGAPDYF--ISVVEDIDRRKAIEEQLRLSKDDLER 676

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS------LTEYYAHKDDVLKTEKYP 260
                   +   +      S         ++  ++       L +     ++ L+     
Sbjct: 677 AARQATHLARRAEAANLAKSAFLANMSHEIRTPLNGLLGMMQLLKTTVLDEEQLEYADMA 736

Query: 261 LLTSEE--SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
           + +       L +  D   I   +         L +      E  +              
Sbjct: 737 IRSGGRLTRLLGDILDLSRIEAERMALSLAPFRLADVFAAITETFAPLVREKGLPLACRA 796

Query: 319 ENLTPETV 326
               P  +
Sbjct: 797 APDVPGVL 804


>gi|260664970|ref|ZP_05865820.1| two-component system response regulatory system histidine kinase
           [Lactobacillus jensenii SJ-7A-US]
 gi|260561024|gb|EEX26998.1| two-component system response regulatory system histidine kinase
           [Lactobacillus jensenii SJ-7A-US]
          Length = 618

 Score =  333 bits (854), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 89/433 (20%), Positives = 179/433 (41%), Gaps = 38/433 (8%)

Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
             R+  +Q    +            ++  +           V+    +   E E  +L S
Sbjct: 209 EMRMQALQVADGDYSGQV--KIYSNDELGQLAEAFNTLSIRVERSQEQS--ESERRRLDS 264

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           +L   +DG+   +R G ++  N+          ++ + KP T  L           +   
Sbjct: 265 VLSHMTDGVIATDRHGNVIILNQMALSFLDIKEKEAVNKPITKILGLADDVSAQELI--- 321

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKK--LPFSSCYSLTMHDISEWKQEKNKLSHA 574
                +Q +       T +E +L     + +    F S     +HD++E ++ +N+    
Sbjct: 322 ---GNQQEMMITVNEGTPDEMILHASFSLIRRVTGFVSGAVCVLHDVTEQQKNENE---- 374

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
                     +  F++ VSHE+RTPLT++  + E + +  +         ++        
Sbjct: 375 ----------QRQFVSNVSHELRTPLTSLRAYIEALNDGAW--KDPEIAPQFLEVTQEET 422

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV---------QLYANEKRIL 685
             ++ ++NDLL +S+++ G   +  E V+ ++ +S  ++           +    EK+  
Sbjct: 423 ERMIRMINDLLSLSRMDRGVAKMDLEWVNFNDFLSHVLNRFDMIVKKDAEKGQEGEKKYS 482

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           I+    N    +  D   + Q+  NI++NAI ++P GG I +  + + N ++IL + D G
Sbjct: 483 IKRKITNQDLWVEIDTDQMMQVIDNIMNNAIKYSPDGGVITVGLSQSQN-QIILSISDQG 541

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+   +L K    F ++  ++     GTGLGL +AK +V+A+ G+ +  S   KG+   
Sbjct: 542 LGIPKKDLNKIFDRFYRVDKARSREQGGTGLGLAIAKEIVEAHKGRIWADSQEGKGSTFY 601

Query: 806 IIFPLYDTSHPHD 818
           I  P    S   D
Sbjct: 602 ISLPFEPMSEEDD 614


>gi|170748185|ref|YP_001754445.1| multi-sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
 gi|170654707|gb|ACB23762.1| multi-sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 1157

 Score =  333 bits (854), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 125/702 (17%), Positives = 245/702 (34%), Gaps = 60/702 (8%)

Query: 155 TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214
           + L + +  +ALP          F           +       +  ++++  L E     
Sbjct: 239 SGLILEVRCSALP---DGGTVLTFG------DVTQNRIAERALEESERRYRLLAENATDI 289

Query: 215 SSVEKEKYDIFSQQSPPPHL---RMKNKVSSLTEYYAHKDD--VLKTEKYPLLTSEESSL 269
                              +     ++ + +    + H D+    +     L     S  
Sbjct: 290 IIWSDLTARRRYVSPAVRAVLGYDPQDLIGTHPLDFVHPDEVGAYRRVLDELTGGRASRA 349

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESF-----EYLSHRNHPSLSAYFDEGENLTPE 324
              + +   + +    +  F    + +  +               +        E     
Sbjct: 350 LTSQRYRHRDGHWVWLEISFSLTHDRATGAPDGYVATLRDVSARKAAEDALRLSEARYRA 409

Query: 325 TVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
             D  P   ++ S   G+  Y N  F                G +      +   ++A +
Sbjct: 410 LADALPQLVWIASIETGDASYVNRRFEDYYG---------PIGPTRAARIARTHPDDAER 460

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
              L+    T  A       +Q +         +           +   G   +  +   
Sbjct: 461 MERLWSEAPTRRAPYEVEGRLQRHDGPYRWHKIVLLPIWQGE-TMVGMLGTALDIDEIVT 519

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
            +R++E     L    +A   G   ++ + G I   +   ++L G   +         +L
Sbjct: 520 ARREVEAASSLLHLAQQAAHAGTWHLDLDSGRIE-WSPESARLHGIETDRNHVLDTRDWL 578

Query: 502 EQNTPSVMNHYLT-EILSLDLRQTLEKITLGSTKEEKLLSLR-IIIKKLPFSSCYSLTMH 559
                      +     +    +T        T +  +  +  +       +        
Sbjct: 579 ALIDRGDGERAMEIAAAAAAAGETFSIEFRVPTPDGGVRWINGVGRGAPGQARRMIGLNI 638

Query: 560 DISEWKQEKNKLSHAKK-------IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
           D++  K  +  L  AK         AE+ S+ KS+FLA +SHEIRTPL  +IG+++++ +
Sbjct: 639 DVTARKAAEAALLDAKAAADAACLQAERASAAKSEFLAAMSHEIRTPLNGVIGYADLLLD 698

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
              G    P     A+ I  +G  +L +VND+LD SK+E+G++ +   P +++  +  A+
Sbjct: 699 ---GTDLGPAARRNADRIRTAGAALLTVVNDVLDFSKVEAGQIEIVPRPFAVEALIDNAV 755

Query: 673 SLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
           S+V+  A  K + +  +    +P  I  D   ++QI LN+L+NA+ FT SGG I +S   
Sbjct: 756 SIVRPSAERKGLALTVALGPGLPDWIEGDEDRLRQILLNLLNNAMKFTASGG-IDLSVRV 814

Query: 732 TSNE-------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
           + +         +   VRDTG+G+   + ++  + F Q+  S      GTGLGL ++K++
Sbjct: 815 SPDAASATGGTRLRFAVRDTGIGIPTDKCDRLFRRFSQVDGSISREYGGTGLGLAISKSL 874

Query: 785 VDANMGKFYIFSTPAKGTLIEII------FPLYDTSHPHDCI 820
           V    G   + ST   G+           FP    + P   I
Sbjct: 875 VTLMGGTIGVASTVGHGSTFWFEADLPAAFPPARETAPASAI 916



 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 53/518 (10%), Positives = 121/518 (23%), Gaps = 35/518 (6%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR------- 139
           W +D        S  L + +G        + L +     H D    +   L+        
Sbjct: 35  WRLDPCTRRVTRSANLARLLGTPGA--CDLPLAEHVACYHPDDRAALVARLEGILEGSRP 92

Query: 140 QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199
              +  +  +   +GT L   I    LP    +       G  ++             + 
Sbjct: 93  AIPYQARARVVRPDGTVLDAIIQ--GLPESGPDGALVALHG--LILDVTDLVQSERRARE 148

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP--------HLRMKNKVSSLTEYYAHKD 251
            D       +  +    V      + +               LR    +  +  Y   + 
Sbjct: 149 TDMILRGTLDSMEQGLVVLDAGRRVRAFNRSAADLLDLPDDILRAGVALPDIHAYQRARG 208

Query: 252 DVLKTEKYPLLTSEESSL-PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310
           D  +    P   +      P    F     +    +     L +           +N  +
Sbjct: 209 DFAEAGSDPGFATAGRGRGPLPPLFDWRLPSGLILEVRCSALPDGGTVLTFGDVTQNRIA 268

Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
             A  +          +   I  +        Y +P+   +  Y    D+     L  + 
Sbjct: 269 ERALEESERRYRLLAENATDIIIWSDLTARRRYVSPAVRAVLGY-DPQDLIGTHPLDFVH 327

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
                +    +  +   R+ R   +   R      +                        
Sbjct: 328 PDEVGAYRRVLDELTGGRASRALTSQRYR----HRDGHWVWLEISFSLTHDRATGAPDGY 383

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPV 489
                +    +  +  + +   +  ++ +A    + I + E G     NR     +G   
Sbjct: 384 VATLRDVSARKAAEDALRLSEARYRALADALPQLVWIASIETGDASYVNRRFEDYYGPIG 443

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
                +        +    M    +E  +       E        +      +I++  + 
Sbjct: 444 PTRAARIART--HPDDAERMERLWSEAPTRRAP--YEVEGRLQRHDGPYRWHKIVLLPIW 499

Query: 550 FSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
                     T  DI E    + ++  A  +       
Sbjct: 500 QGETMVGMLGTALDIDEIVTARREVEAASSLLHLAQQA 537



 Score = 64.7 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 29/247 (11%), Positives = 78/247 (31%), Gaps = 11/247 (4%)

Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
              L       D+ +A  ++     P        +   +    R  I   AR   ++ + 
Sbjct: 50  LARLLGTPGACDLPLAEHVACY--HPDDRAALVARLEGILEGSRPAIPYQARARVVRPDG 107

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
              L        ++      +  +G+  +  D   ++R+     M L   L++   G+ +
Sbjct: 108 -TVLDAIIQGLPESGPDGALVALHGLILDVTDLVQSERRARETDMILRGTLDSMEQGLVV 166

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE-----ILSLDLR 522
           ++    + + NR+ + L   P + +        +     +  +            +   R
Sbjct: 167 LDAGRRVRAFNRSAADLLDLPDDILRAGVALPDIHAYQRARGDFAEAGSDPGFATAGRGR 226

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES 582
             L  +         +L +R             LT  D+++ +  +  L  +++     +
Sbjct: 227 GPLPPLFDWRLPSGLILEVRCSALP---DGGTVLTFGDVTQNRIAERALEESERRYRLLA 283

Query: 583 SHKSDFL 589
            + +D +
Sbjct: 284 ENATDII 290


>gi|302390008|ref|YP_003825829.1| multi-sensor signal transduction histidine kinase
           [Thermosediminibacter oceani DSM 16646]
 gi|302200636|gb|ADL08206.1| multi-sensor signal transduction histidine kinase
           [Thermosediminibacter oceani DSM 16646]
          Length = 586

 Score =  333 bits (854), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 89/364 (24%), Positives = 163/364 (44%), Gaps = 27/364 (7%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           ++  E  QL ++L + +DG+  ++  G +L  N    +L G           +  LE   
Sbjct: 238 ELSQEKNQLRNVLLSMTDGVITLDSSGRVLMANPQAEELLG------NGPQGSFDLELTV 291

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
             V+   +  +         E    G     +L  L   +            + D++  K
Sbjct: 292 EQVLGELVQRVKHNKKSLQDEVKVEGRILSVRLAPL---LNDESEVWGVVAVLQDVTREK 348

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + +              S + +F+A VSHE+RTPLT + G++E + +            +
Sbjct: 349 KLE--------------SLRREFVANVSHELRTPLTYLQGYTEALIDGMV--KQPEEKKK 392

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           Y N I      +  +VNDLLD+S +E+G + L  + +SL++ +   I  V   A +KR+ 
Sbjct: 393 YLNIILEETLRLRRLVNDLLDLSLMETGHLTLKKDNISLNKLIERVIKKVNPVAEKKRVN 452

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           I       +P I AD   ++Q+ +N++ NA+ +T +GG+III  +    E V + V+D G
Sbjct: 453 ITAEL-KELPLIYADEDRMEQVLINLIDNALRYTENGGEIIIEAS-AGTESVTVCVKDRG 510

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
            G+   EL    + F ++  ++     GTG+GL + K +++A+ GK +  +    G +  
Sbjct: 511 PGIPEDELPFIWERFYKVDKARTRDNGGTGIGLAIVKNIIEAHGGKVWAKNLRDSGAVFC 570

Query: 806 IIFP 809
              P
Sbjct: 571 FNIP 574


>gi|194333604|ref|YP_002015464.1| multi-sensor signal transduction histidine kinase [Prosthecochloris
           aestuarii DSM 271]
 gi|194311422|gb|ACF45817.1| multi-sensor signal transduction histidine kinase [Prosthecochloris
           aestuarii DSM 271]
          Length = 599

 Score =  333 bits (854), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 85/369 (23%), Positives = 169/369 (45%), Gaps = 22/369 (5%)

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
            +     ++  +  + I + +  G I+  N A  KLF     D+LR      +   T + 
Sbjct: 245 QQEEWFKAVFSSIREAIIVTDPRGSIILANPAACKLFKLQCGDMLRSRPGRKV---TNAQ 301

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR-IIIKKLPFSSCYSLTMHDISEWKQE 567
           +      +         E++ + + + E++L    + + K  +S      ++DI+  +  
Sbjct: 302 LLDLFERVRLSSKPIVKEEMLVMTERGERVLQTSAMPVIKDSYSDGTVFVLNDITRLRNL 361

Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
           +                + DF++ VSHE+RTPLT+I G++E +             + + 
Sbjct: 362 E--------------RIRRDFVSSVSHELRTPLTSIKGYTETLLEGALD--DREDAMNFL 405

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
             I +    +  ++ND+LD+SKIESG++   F PVS+++ V + ++L +    +K I ++
Sbjct: 406 RIILQESEQLTALINDVLDLSKIESGRIEYKFTPVSIEDVVLKTVALFRRSLEKKSIDLQ 465

Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHF-TPSGGQIIISTTHTSNEEVILRVRDTGV 746
                ++P + AD   ++ +  N+L NAI +     G+I I     +N+ V L V D G 
Sbjct: 466 IQIPGDLPPVFADKDYLEIVVRNLLDNAIKYVADDSGRIRI-IAFPANDMVRLEVEDNGA 524

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+   +L +  + F ++  ++  +  GTGLGL + K +V ++ G   + S    G++  I
Sbjct: 525 GIPQKDLGRIFERFYRVDKARSRQIGGTGLGLSIVKHIVLSHKGNVEVRSRQNLGSVFSI 584

Query: 807 IFPLYDTSH 815
             P+     
Sbjct: 585 TIPVASPQQ 593


>gi|237509427|ref|ZP_04522142.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei MSHR346]
 gi|235001632|gb|EEP51056.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei MSHR346]
          Length = 771

 Score =  333 bits (854), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 104/519 (20%), Positives = 181/519 (34%), Gaps = 27/519 (5%)

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEI 362
           S R + +L        +     +        V   HG L Y NPS   L        +  
Sbjct: 111 SRRANDALRRREAGARHYYETLLQSLTQGVVVSDRHGMLTYMNPSAAALIGC-DATAVRG 169

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
                                +          +       +  +    + +        +
Sbjct: 170 LPFRDVYRAYDGRGARVRASALEHVLRSGRSASVEGH--WLAPHDGQRVPIAEAASPLVD 227

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
              +      I  +    R      ++    L  ++EA+ D I  +     I S N A  
Sbjct: 228 SAGDMTGAVLIVRDISIERERSAASQM----LRRLVEASPDAIVGVGSNRRITSWNPAAR 283

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
           ++FGY           + +           L E +            L   ++   +   
Sbjct: 284 RMFGYDEHAARGCDVAMLIAPRWLRNHP--LPESVPDMREPIENVDVLCVRQDGGRMRAT 341

Query: 543 IIIKKLPFSSCYSL----TMHDISEWKQEKNK-------LSHAKKIAEKESSHKSDFLAR 591
           +    +       +    T+ D  E ++ + +          A++ A+  +  K + LA 
Sbjct: 342 MSASPVFDERDACIALSLTLRDTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLAT 401

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           VSHE+RTPL  I G+ EV++N   G L      +  + IDRS   +  +V D+LD S + 
Sbjct: 402 VSHELRTPLNVIYGWIEVLRNPVDGAL----QQQAIDAIDRSARSLSRMVGDILDASSLA 457

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
           +GK+ L   PV L   V++    +   A    I +    A     +  D   ++Q+  N+
Sbjct: 458 TGKLRLDAMPVDLVRIVNDVTGALGAAAQADGIALSVECALATCIVSGDGERLRQMLSNL 517

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           LSNA  FTP GG++ +S       +  L V DTG G++   L    + F +   +     
Sbjct: 518 LSNAFKFTPRGGRVTVSLERHD-AQAKLTVADTGQGISPEFLPHVFEAFRRAEGAPASPR 576

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFP 809
            G GLGL + + + + + GK    S    +GT   I  P
Sbjct: 577 RGLGLGLSIVRHIAELHGGKVEAASAGKNRGTTFAITLP 615



 Score = 65.4 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/225 (12%), Positives = 54/225 (24%), Gaps = 5/225 (2%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK---RQNTWYGK 146
           D HG L  ++      IG  A  + G+   DV               L+   R       
Sbjct: 144 DRHGMLTYMNPSAAALIGCDATAVRGLPFRDVYRAYDGRGARVRASALEHVLRSGRSASV 203

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
              W        VPI  AA P+     + +G     IV    ++ +  A  + L +    
Sbjct: 204 EGHWLAPHDGQRVPIAEAASPLVDSAGDMTGA--VLIVRDISIERERSAASQMLRRLVEA 261

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
             +   G  S  +      + +    +     +   +    A +          +    E
Sbjct: 262 SPDAIVGVGSNRRITSWNPAARRMFGYDEHAARGCDVAMLIAPRWLRNHPLPESVPDMRE 321

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
                       +  +         + +                 
Sbjct: 322 PIENVDVLCVRQDGGRMRATMSASPVFDERDACIALSLTLRDTGE 366


>gi|332141178|ref|YP_004426916.1| putative two-component member protein [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327551200|gb|AEA97918.1| putative two-component member protein [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 1111

 Score =  333 bits (854), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 109/505 (21%), Positives = 208/505 (41%), Gaps = 19/505 (3%)

Query: 313 AYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
               E E +     D        V   G +  ANP+   +  YK  + I      S ++ 
Sbjct: 263 VRAIESERIQRAITDTAVDAIMTVNDKGIIKTANPAVEHIYGYKPDELIG--LHASEIVP 320

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
             +    +              I     +  ++   E       + + K +  P  +   
Sbjct: 321 HERRHLYDDDFFSQRVVPTEQIIGTGREVEILRKGGEKIPVRLGVGYTKIDGKPVFVSFA 380

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI--INREGI-ILSTNRAVSKLFGYP 488
               +    +  +  +     +  S++     G+A   +N  G  ++  + AV+++ GY 
Sbjct: 381 ---SDLRKRKEIEDALRESEAKFRSLISNIP-GVAYRCLNMPGWPMVFISDAVTEVTGYS 436

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            ED +                   L  + S     + E   +  + E K ++   +  K 
Sbjct: 437 PEDFVLPDPKRSFSDLYHPDDVERLCNVNSDGGPFSYEYRIVAKSGEVKWVTEHGVHVKD 496

Query: 549 PFSSCYSL--TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
              +   +   + DI++ +  +++L  AK+ AE+ ++ ++ FLA +SHEIRTP+ AIIGF
Sbjct: 497 EDGNVLYVDGFISDITQRRVMEDELKAAKEKAEQAAAARTAFLANMSHEIRTPMNAIIGF 556

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
           S+++  +            +   I+RS   +L ++ND+LD +K++ GK++L +    + E
Sbjct: 557 SDLMLGEAL----RDEQKSHLTTINRSARSLLHLLNDILDSAKLDKGKLDLDYRDFLIRE 612

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI 725
            +   +S   L A  K++ +  +   ++          ++Q+  N++ NA+ FT  G ++
Sbjct: 613 ELDLVVSTFWLEAKRKKVDLVLNVDASVADGYRGVPERMRQVLNNLIGNAVKFTHEG-KV 671

Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
            I+   +  E V   V DTG+GMT  +L+    PF Q   S   +  GTGLG  ++K +V
Sbjct: 672 EIAVR-SEGELVYFDVSDTGIGMTKAQLDNVFDPFSQADASMSRKYGGTGLGTTISKQLV 730

Query: 786 DANMGKFYIFSTPAKGTLIEIIFPL 810
           +   G     S   KGT      PL
Sbjct: 731 ELMGGNICATSEEGKGTTFTFRLPL 755


>gi|126657552|ref|ZP_01728708.1| hypothetical protein CY0110_29879 [Cyanothece sp. CCY0110]
 gi|126621256|gb|EAZ91969.1| hypothetical protein CY0110_29879 [Cyanothece sp. CCY0110]
          Length = 1497

 Score =  333 bits (854), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 97/655 (14%), Positives = 226/655 (34%), Gaps = 46/655 (7%)

Query: 184  VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL 243
            +      N       R         + +              + +       + +  ++L
Sbjct: 712  IQELTQLNADIDNLLRSTDIGVIFLDRQFNIRKFTPAATRAVNIKPSDIGRPLTDLTNNL 771

Query: 244  TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303
                      L      + T++E    E     + +        Y    +++      ++
Sbjct: 772  NCPN------LIDIVQQVATTQEPYEQEVTISPSHDYLLMRVHPYLQNDKDSEGIVMTFV 825

Query: 304  SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEI 362
                   +  +  +   L  +  +  P    ++         N +   +          I
Sbjct: 826  QVNELKQVQQHLKQANILLEKLYEASPAGLCLFDQELKFIRVNQALSRINGVS------I 879

Query: 363  AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
             G L   L          ++ ++    +      +  +  I              +   +
Sbjct: 880  EGHLGKTLHDIAPQLAEYLEGILQQVINTGEAICNIEVRGIMPATPEVERCWIASYYPVD 939

Query: 423  QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS------ 476
               +      +  E       +  +    M+L         G   +  E  +        
Sbjct: 940  FINDGRGVGAVVVEITQRVQAEVALRNSQMRLQEAQRLAKVGNWELKYEENLTLATAKPD 999

Query: 477  TNRAVSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
             ++ + +++    +      +             + +    ++   +   L+     S +
Sbjct: 1000 CSKELYEIYQLDPQPSSPSLEDILECYPPADRQALENAFQLLIFHGIPFGLDVELHISEQ 1059

Query: 535  EEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEKE----------S 582
            +   L++   + +        +  T+ DI+E K+ + +L    +  E+           +
Sbjct: 1060 DIHSLNVIGQVIRDKDGQILKFYGTVMDITERKRIEQELVRRNQALEEAIAVAQVADSAN 1119

Query: 583  SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
              KS+FLA +SHEIRTP+ +I+   ++++  +       +  +    +  + N +L+I+N
Sbjct: 1120 QAKSEFLANMSHEIRTPINSIMLVGQLLEGTKLDT----QQKKLLQTLTNNSNHLLNIIN 1175

Query: 643  DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADL 701
            D+L +SK+ES  + L   P  L+E   E  +     A  K I +  + A+++P + + D 
Sbjct: 1176 DILSLSKLESRSLELEHRPFHLNEMFQELSNTFTPQAQSKEIGLTFTIASDVPDVLMGDD 1235

Query: 702  RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-------EVILRVRDTGVGMTNYELE 754
              ++Q+  N++SNAI FT SG Q+ ++ +   +         +   V+DTG+G+   + E
Sbjct: 1236 FRLQQVFRNLISNAIKFTSSG-QVTVNASCDRDSVSEKSQVNLYFTVQDTGIGIDPAKQE 1294

Query: 755  KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
               +PF Q  NS   +  GTGLGL + + ++    G+  + S   +G+   +  P
Sbjct: 1295 DLFQPFVQADNSTTRQFGGTGLGLTICRRIIQTMNGEIGLDSIVGEGSTFWLKIP 1349



 Score = 55.4 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/292 (10%), Positives = 76/292 (26%), Gaps = 22/292 (7%)

Query: 90   DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
            D       +++ L +  G      +G  L D++  L       +  ++            
Sbjct: 859  DQELKFIRVNQALSRINGVSIEGHLGKTLHDIAPQLAEYLEGILQQVINTGEAICNIEVR 918

Query: 150  --WPIEGTNLYVPIDLAALPI-YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
               P         I  +  P+ +  +    G     +V + +      AL     +    
Sbjct: 919  GIMPATPEVERCWI-ASYYPVDFINDGRGVGAV---VVEITQRVQAEVALRNSQMRLQEA 974

Query: 207  LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKN-----------KVSSLTEYYAHKDDVLK 255
                K G+  ++ E+    +   P     +              +  + E Y   D    
Sbjct: 975  QRLAKVGNWELKYEENLTLATAKPDCSKELYEIYQLDPQPSSPSLEDILECYPPADRQAL 1034

Query: 256  TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
               + LL           + H    + ++       +++   +  ++       +     
Sbjct: 1035 ENAFQLLIFHGIPFGLDVELHISEQDIHSLNVIGQVIRDKDGQILKFYGTVMDITERKRI 1094

Query: 316  DEGE-NLTPETVDKCPIPFFVYSHGNL---FYANPSFLLLTKYKSVDDIEIA 363
            ++          +   +     S       F AN S  + T   S+  +   
Sbjct: 1095 EQELVRRNQALEEAIAVAQVADSANQAKSEFLANMSHEIRTPINSIMLVGQL 1146



 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/266 (12%), Positives = 85/266 (31%), Gaps = 15/266 (5%)

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
           +   + +   R +             +    N   +      ++           +   +
Sbjct: 646 SELEQELQQTRENLQVTIEELETANEEQQATNEELLASNEELQSTNEELQSVNEELYTVN 705

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
            + +   +++      + ++L +T  G+  ++R+  I     A ++       DI  +P 
Sbjct: 706 AEHQSKIQELTQLNADIDNLLRSTDIGVIFLDRQFNIRKFTPAATRAVNIKPSDI-GRPL 764

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLRIIIKKLPFSSCYSL 556
           T          +   + ++ +   ++  E+   +  + +  L+ +   ++    S    +
Sbjct: 765 TDLTNNLNCPNLIDIVQQVATT--QEPYEQEVTISPSHDYLLMRVHPYLQNDKDSEGIVM 822

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI-----RTPLTAIIGFSEVIK 611
           T   ++E KQ +  L  A  + EK        L     E+        L+ I G S    
Sbjct: 823 TFVQVNELKQVQQHLKQANILLEKLYEASPAGLCLFDQELKFIRVNQALSRINGVS---I 879

Query: 612 NQRFGPLGN---PRYIEYANYIDRSG 634
               G   +   P+  EY   I +  
Sbjct: 880 EGHLGKTLHDIAPQLAEYLEGILQQV 905


>gi|152997039|ref|YP_001341874.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1]
 gi|150837963|gb|ABR71939.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1]
          Length = 1426

 Score =  333 bits (854), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 110/676 (16%), Positives = 234/676 (34%), Gaps = 54/676 (7%)

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL--RMKNKVSS-- 242
            RV    +        + + L E        +     I S       +    K +V    
Sbjct: 328 IRVSMVRQREVMAHQSRITALVESSADGIISKNLDGVIVSWNKGAESIFGYTKEEVVGQK 387

Query: 243 -LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301
            L               +  +  ++ S+  +    T           F  + N+      
Sbjct: 388 VLDLLVPPPLQDEDKSIFSSVKDKKESISIETRRTTKAGTDVPVSLTFSPIFNDDDGIIG 447

Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDK-----------------------CPIPFFVYSH 338
                   S     +         ++                          +       
Sbjct: 448 VSQSVRDISERKKAEAKIRELNTNLENQVKERTAELLELNLLLNDVVNASSEVSIIATDT 507

Query: 339 -GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP---------KLSDNNAIKPVMLYR 388
            G +   N     +  Y + + +     +   + +          K +  +    + +  
Sbjct: 508 KGIITLFNHGAQKMLGYTAEEVVGQRTPVGFHIQSEIELQRADIFKATGTHVTDNLEVLI 567

Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
                    ++  T       +  ++ +     +   E +   GI  +  + +  +R++ 
Sbjct: 568 FKALHENFDSQEWTYVAKNGVARPVSLVITPMKSSDDEVIGFLGIAMDISEQKTTQRELI 627

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP----VEDILRKPFTVFLEQN 504
               QL    E    GI   + E   L  + ++ +++        + I    +   +  +
Sbjct: 628 STRDQLLLAAEVAELGIWTWDIEDDTLEWSDSMFEIYHLSKSQKQDGIKYADWYNRVHPD 687

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDIS 562
              +  + L E +       L    +      + +  R  + K         +    DI+
Sbjct: 688 DRDMAENALKEAVEGINEYNLVFRIVLPDDSVRFIFARASLHKNAEGKMTKVTGINRDIT 747

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           + +  ++ L  AK  A+  S+ KS+FLA +SHEIRTP+ AI+G   ++K          +
Sbjct: 748 QERGLEDWLRKAKDEADAASAAKSNFLANMSHEIRTPMNAILGMLHLVKRTTLTH----Q 803

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             +Y +    S   +L ++ND+LD SK+++GK+ L   P  ++E + E  +++   + EK
Sbjct: 804 QNDYVSKAQISAKSLLSLINDILDFSKVDAGKLELEKAPFEVEELLCELSTVLSGSSLEK 863

Query: 683 RILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI--- 738
            + +      +IP  ++ D   + QI +N++SNA+ FT  G  ++     + +  V    
Sbjct: 864 DVELIFDIDKDIPAYLIGDKLRLLQILINLVSNAVKFTLEGSVVLEIKQLSIDPRVSRLS 923

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           + V+DTG+G+   +++     F Q  +S   R  G+GLGL + +  V+   G   + S  
Sbjct: 924 VSVKDTGIGIAKDQIDSIFDVFSQGESSTARRFGGSGLGLVICRRFVELMGGSLQVDSVL 983

Query: 799 AKGTL--IEIIFPLYD 812
            +G+     I  P+ D
Sbjct: 984 GEGSRFYFTIDLPIAD 999



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 47/422 (11%), Positives = 117/422 (27%), Gaps = 38/422 (9%)

Query: 169 YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228
              + EF+G RGFG +      +            +   +      +  E          
Sbjct: 93  RDVDNEFAGARGFGFIRRVPQSSVDNFTSLARQDGWPDFYIKMLNPNFNEHYVIQYI--- 149

Query: 229 SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288
              P  R +  V        ++ +   +  Y         +   +       +       
Sbjct: 150 --EPVERNRQAVGLDIASEKNRREAATSSLYSGEVRLTGPITLVQASGKPQQSFLILMPI 207

Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSF 348
           +             ++          +     L  E +         Y      Y     
Sbjct: 208 YRG-------GSTPVTQAERIEKGFGWSYAPLLMEEVLAGLN-----YDPAKFHY----- 250

Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
             +     +DD         L        N++ + V   +       +   +        
Sbjct: 251 -EIFDITDLDD-------QILFYNSGEIKNDSHEQVETSQVYGRQWQSRLHVSPAFIAD- 301

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468
             L +             ++    +      + + +R++     ++ +++E+++DGI   
Sbjct: 302 --LHLPDPFVFLVIGLSISLLSTILVVVIRVSMVRQREVMAHQSRITALVESSADGIISK 359

Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528
           N +G+I+S N+    +FGY  E+++ +     L        +  +   +       +   
Sbjct: 360 NLDGVIVSWNKGAESIFGYTKEEVVGQKVLDLLVPPPLQDEDKSIFSSVKDKKES-ISIE 418

Query: 529 TLGSTKEEKLLSLRIIIKKL-PFSSCYSLT---MHDISEWKQEKNKLSHAKKIAEKESSH 584
           T  +TK    + + +    +             + DISE K+ + K+       E +   
Sbjct: 419 TRRTTKAGTDVPVSLTFSPIFNDDDGIIGVSQSVRDISERKKAEAKIRELNTNLENQVKE 478

Query: 585 KS 586
           ++
Sbjct: 479 RT 480



 Score = 65.4 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/408 (8%), Positives = 99/408 (24%), Gaps = 53/408 (12%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNTWYGKTTL 149
            G +   ++      G    +++G ++ D+     +   +      +  ++ +   +T  
Sbjct: 362 DGVIVSWNKGAESIFGYTKEEVVGQKVLDLLVPPPLQDEDKSIFSSVKDKKESISIETRR 421

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL--------- 200
               GT+  VP+ L   PI++ +    G      V          A  + L         
Sbjct: 422 TTKAGTD--VPVSLTFSPIFNDDDGIIGVSQ--SVRDISERKKAEAKIRELNTNLENQVK 477

Query: 201 -------------DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247
                        +   +   E+    +  +                  +  V   T   
Sbjct: 478 ERTAELLELNLLLNDVVNASSEVSIIATDTKGIITLFNHGAQKMLGYTAEEVVGQRTPVG 537

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQED-----------------FHTINLNQYTKKQYFG 290
            H    ++ ++  +  +  + + +  +                 +   N           
Sbjct: 538 FHIQSEIELQRADIFKATGTHVTDNLEVLIFKALHENFDSQEWTYVAKNGVARPVSLVIT 597

Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEG----ENLTPETVDKCPIPFFVYS-HGNLFYAN 345
            ++++  E   +L      S             +      +   +  + +    +    +
Sbjct: 598 PMKSSDDEVIGFLGIAMDISEQKTTQRELISTRDQLLLAAEVAELGIWTWDIEDDTLEWS 657

Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405
            S   +         +  G            D+  +    L  +       +  +  I  
Sbjct: 658 DSMFEIYHLSKSQ--KQDGIKYADWYNRVHPDDRDMAENALKEAVEGINEYNL-VFRIVL 714

Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
             ++   +        N   +     GI  +    R  +  +     +
Sbjct: 715 PDDSVRFIFARASLHKNAEGKMTKVTGINRDITQERGLEDWLRKAKDE 762



 Score = 42.7 bits (99), Expect = 0.28,   Method: Composition-based stats.
 Identities = 28/268 (10%), Positives = 65/268 (24%), Gaps = 27/268 (10%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            D  G +   +    K +G  A +++G R   V   +  +      D+ K   T      
Sbjct: 505 TDTKGIITLFNHGAQKMLGYTAEEVVGQR-TPVGFHIQSEIELQRADIFKATGTHVTDNL 563

Query: 149 LW----------------PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192
                              +    +  P+ L   P+ S + E  GF G  +         
Sbjct: 564 EVLIFKALHENFDSQEWTYVAKNGVARPVSLVITPMKSSDDEVIGFLGIAM--DISEQKT 621

Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL------RMKNKVSSLTEY 246
            +        +     E+ +        + D          +      + ++ +     Y
Sbjct: 622 TQRELISTRDQLLLAAEVAELGIWTWDIEDDTLEWSDSMFEIYHLSKSQKQDGIKYADWY 681

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTI--NLNQYTKKQYFGTLQNNSKESFEYLS 304
                D     +  L  + E        F  +  + +           +N   +  +   
Sbjct: 682 NRVHPDDRDMAENALKEAVEGINEYNLVFRIVLPDDSVRFIFARASLHKNAEGKMTKVTG 741

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIP 332
                +     ++      +  D     
Sbjct: 742 INRDITQERGLEDWLRKAKDEADAASAA 769


>gi|239907548|ref|YP_002954289.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239797414|dbj|BAH76403.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 867

 Score =  333 bits (854), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 91/383 (23%), Positives = 163/383 (42%), Gaps = 17/383 (4%)

Query: 437 DVDTRINKRKMEIEVMQLCSILEAT-SDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
             D +  +  +++   +   + +   S  +   +R   ++  N A  K++GY   + +  
Sbjct: 340 ISDRKRAEDAVKLSEERFKKLFDNVDSVAVQGYDRNRKVIYWNNASEKIYGYKQNEAIGV 399

Query: 496 PFTVFLEQNTPSVMN-HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554
                +      +     + +                  K+   + +         S   
Sbjct: 400 HLEDLIIPPDMRLHVVEAIRQYAEEGKPIPAG-ELHLMRKDGTSVPVYSSHVMQTTSKGD 458

Query: 555 SLTM---HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
                   D++E    + +L  AK  AE  S  KS+FLA +SHEIRTPL  I+G  ++++
Sbjct: 459 IELFCLDVDLTELDVVRKELISAKDKAEASSMAKSEFLANMSHEIRTPLNGILGMLQLLE 518

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
                   +    EY     +S   +  +++D+LD+SKIES +  +      ++E V   
Sbjct: 519 TTTI----SDEQKEYLLGAIKSSKRLTRLLSDILDLSKIESKRTTIDQVEFDIEEVVRSV 574

Query: 672 ISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
                +   E  +  RT   NNIPR ++ D   ++QI  NI+ NAI FTP+G +I +  +
Sbjct: 575 SEAFSISIKENGLSFRTVLDNNIPRRLIGDETRMRQILFNIVGNAIKFTPTG-KIEVELS 633

Query: 731 HTSNE-----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
             S+       V++ V DTG+G+    L+  ++PF Q+  S     +G GLGL + + +V
Sbjct: 634 LLSHHTNKSCRVLVSVADTGIGIPADRLKDILEPFTQVDGSYIRSKQGAGLGLAIVRKLV 693

Query: 786 DANMGKFYIFSTPAKGTLIEIIF 808
               G   I S    GT   ++F
Sbjct: 694 ALLGGNICIDSELGAGTTFYVVF 716



 Score = 43.1 bits (100), Expect = 0.19,   Method: Composition-based stats.
 Identities = 13/133 (9%), Positives = 37/133 (27%), Gaps = 9/133 (6%)

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV--EDILRKPFTVFLEQNTPSVMNH 511
              +L        +++ +  ++ TN+A   +       E    K  +     +    M+ 
Sbjct: 29  FQIVLSCLPMPYLLVDVDERVIQTNQACLDMLKIDGSVESCYEKKLSEVFYND---PMHP 85

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQE 567
            +      + +   +       +    L +   +  L   +           D +E K+ 
Sbjct: 86  TVVGKSISENKIFRDIEVHTIDRHGSELQIVANVFPLYDLNSTCIGGMCIYVDTTERKRT 145

Query: 568 KNKLSHAKKIAEK 580
           +  L        +
Sbjct: 146 EEALERRLVALTR 158


>gi|46578865|ref|YP_009673.1| sensor/response regulator [Desulfovibrio vulgaris str. Hildenborough]
 gi|46448277|gb|AAS94932.1| sensor/response regulator [Desulfovibrio vulgaris str. Hildenborough]
          Length = 1513

 Score =  333 bits (854), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 119/651 (18%), Positives = 217/651 (33%), Gaps = 33/651 (5%)

Query: 185  HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSS 242
             VN          + L + ++ L +      +   E   +    +          + V  
Sbjct: 727  TVNAEFERKNDQLRILGEDYAQLFDTIPIAIASLDESLRVRRFNAGMSAIFHLQPHDVGR 786

Query: 243  LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302
              +  A            L            +    +      +Q    +++ +  +   
Sbjct: 787  PLQQIASCLAEPDNLFKSLALGLSEGGTHDSEARLTDG--RWCQQRIHAVRDETGATEHM 844

Query: 303  LSHRNHPSL---SAYFDEGENLTPETVDKCPIPFF----VYSHG-NLFYANPSFLLLTKY 354
            L      +    +    +      E     P   F     +     + Y     + L   
Sbjct: 845  LLTFMDITHVKHAEAMRQEARSLDEVSRNVPGVVFKLCAPHDGNIRVEYVGGGTVELCGL 904

Query: 355  KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
               +       L  L   P +  +       +  +D         +          + + 
Sbjct: 905  SQEEIKADPHALVALF-GPDVVPHILAG---ISATDGEGTPVDVEIPLHCTGGTKWVHVQ 960

Query: 415  FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII 474
                       E     G+  +  + R +  +M     +   IL+     I   +  G  
Sbjct: 961  ATSTPARGGGTE---WYGVAVDATERRYDATRMHNAADRYLRILDHAPMLIWRSDTTGAC 1017

Query: 475  LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
               N       G  +E      +   +  +          +  +  L+Q  E        
Sbjct: 1018 DWFNTTWLDFTGRTMEQEYGYGWAGGVHPDDYDRCVSIYQKAFA--LQQAFEMNYRLKRH 1075

Query: 535  EEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
            + +   L    K LP        +    +DI++       +  A K AE+ +  KS+FLA
Sbjct: 1076 DGQFRWLVDCGKPLPDLDGTFSGFIGYCYDITDAVNALESMCEASKRAEEANRTKSEFLA 1135

Query: 591  RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650
             VSHE+RTPL   +G    +         +P   +Y     RSG  ++ +++D+LD+S+I
Sbjct: 1136 NVSHELRTPLNGALG----MLQLLELSSLSPEQRQYVTTAIRSGQNLVRLLSDILDLSRI 1191

Query: 651  ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIAL 709
            E+GK+ +   P  + E V E  S   L A  K I + T+ A   P  +  D   ++Q   
Sbjct: 1192 EAGKLVIEAIPCDIRELVDEVFSTFSLDATGKGITLETTIAPGTPTYVRTDPLRLRQTLF 1251

Query: 710  NILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNS 766
            N++ NA+ FT  GG ++  ST     + ++L   VRDTG G+    +E   +PF Q+  S
Sbjct: 1252 NLVGNAVKFTEKGGVRVEFSTASMRGDAIVLFCTVRDTGPGIPEDRIESIFQPFTQLDGS 1311

Query: 767  QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
               R  G GLGL +   +++   G   + S P  GT +    P+  T  P 
Sbjct: 1312 YTRRHSGLGLGLGIVCRLMELFGGSIEVESAPDMGTAMHFAIPVGKTRRPQ 1362



 Score = 47.7 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 26/226 (11%), Positives = 51/226 (22%), Gaps = 11/226 (4%)

Query: 80   PRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI-GDLLK 138
                   W  D  G     +       G    +  G            D    I      
Sbjct: 1002 DHAPMLIWRSDTTGACDWFNTTWLDFTGRTMEQEYGYGWAGGVHPDDYDRCVSIYQKAFA 1061

Query: 139  RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
             Q  +     L   +G   +  +     P+   +  FSGF G+   +      +      
Sbjct: 1062 LQQAFEMNYRLKRHDG--QFRWLVDCGKPLPDLDGTFSGFIGY--CYDITDAVNALESMC 1117

Query: 199  RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
               K+    +  K    +    +         P +  +           + +     T  
Sbjct: 1118 EASKRAEEANRTKSEFLANVSHELRT------PLNGALGMLQLLELSSLSPEQRQYVTTA 1171

Query: 259  YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
                 +    L +  D   I   +   +     ++    E F   S
Sbjct: 1172 IRSGQNLVRLLSDILDLSRIEAGKLVIEAIPCDIRELVDEVFSTFS 1217


>gi|297529553|ref|YP_003670828.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           C56-T3]
 gi|297252805|gb|ADI26251.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           C56-T3]
          Length = 597

 Score =  333 bits (854), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 91/364 (25%), Positives = 155/364 (42%), Gaps = 24/364 (6%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            +  E  QL SIL + +DG+   NR+G IL TN    +          +      +    
Sbjct: 251 ALNQEKEQLASILSSMADGVITFNRDGEILITNPPAERFLQ--AWYFEQGNDAEAMAP-L 307

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
           P  +      ++  +  Q+ E    G T     + L   +            + D++E +
Sbjct: 308 PPQVKELFARVVREEKEQSTEVTLQGRT----WVILMTPLYGKTMVRGAVAVLRDMTEER 363

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           +                  + DF+A VSHE+RTP+  + G+SE I +            E
Sbjct: 364 RL--------------DKLRKDFIANVSHELRTPIAMLQGYSEAIIDDI--AASEEEKKE 407

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
            A  I      +  +VNDLLD++++E+G + L +E V L   +   I      A EK+I 
Sbjct: 408 MAKVIYDESLRMGRLVNDLLDLARMEAGHIELEYEQVKLVPYIERVIRKFYGLAKEKQIE 467

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +   F +    I  D   ++Q+  N++ NAI  T SGG + +    + +  V + V+D+G
Sbjct: 468 LTAEFRDRDIEIAFDPDRIEQVLTNLIDNAIRHTESGGTVRLIIEPSGDG-VTIHVQDSG 526

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
            G+   +L    + F +   ++     GTGLGL +AK +V+A+ G   + S   +GT   
Sbjct: 527 SGIPEEDLPFVFERFYKADKARTRGRSGTGLGLAIAKNIVEAHKGLITVHSKLNEGTTFS 586

Query: 806 IIFP 809
              P
Sbjct: 587 FYLP 590


>gi|163795303|ref|ZP_02189270.1| multi-sensor signal transduction histidine kinase [alpha
           proteobacterium BAL199]
 gi|159179289|gb|EDP63820.1| multi-sensor signal transduction histidine kinase [alpha
           proteobacterium BAL199]
          Length = 664

 Score =  333 bits (854), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 131/638 (20%), Positives = 242/638 (37%), Gaps = 68/638 (10%)

Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270
                 + K    +      P         ++          +       L    + S+ 
Sbjct: 55  AGAEQLLGKPSDTLIGTSFLPAITAWPIPGAADRLLRVLDSGIPDAFDLALRIDGQPSVM 114

Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330
             +            +       +  +             L       E    + +D  P
Sbjct: 115 SIKVTAFAGGLAIYARDVTDRRADEIRMR----------ELEQRARRAERRLIDALDASP 164

Query: 331 IPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK----PVM 385
            PF V+     L   N ++  ++       +        L      +D   +        
Sbjct: 165 DPFAVFDSSSRLVLCNQTWASMSGLGDARLLPGRRFEDLLRQVSIGADPANVGFDTIEAF 224

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
           +         A      I         +         +  ++     +  E         
Sbjct: 225 IQWRLVRHRNADGEPIQITQKDGRVFLI-------RERRMDDGGSVNVATEIT------- 270

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL---- 501
           ++E     L   ++AT   +A+ +RE  ++  N++   LF   V   +       +    
Sbjct: 271 ELERSRRLLRDTVDATEQAVALFDREERLVIWNQSFE-LFSPAVTFRVGMTLEETVLTVT 329

Query: 502 --EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH 559
               +T  +    +T    L L +         + + ++  +R   ++L       +T  
Sbjct: 330 KTSASTMHIDGRPVTAAERLALPRGSFTELERRSADGRIFLIR---ERLTADGGVVITAT 386

Query: 560 DISEWKQEKN----------------------------KLSHAKKIAEKESSHKSDFLAR 591
           D ++ K ++                              L+  K+ AE  S  KS FLA 
Sbjct: 387 DATDLKVKEQTLEAQVQALHAARADAEQHAEHLARMTDMLTREKERAEAASRTKSQFLAN 446

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           +SHE+RTPL A++GFSE++K + FGPLG  RY EYA+ I  SG+ +L ++ND+LD+SKIE
Sbjct: 447 MSHELRTPLNAVLGFSEILKTEAFGPLGAKRYKEYADDIHASGHHLLSLINDILDMSKIE 506

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
           +GK  LH E  +L   +     +++  A E  ++++    +    +  D+R++KQ+ +N+
Sbjct: 507 AGKYRLHKEKEALASIIGAVGRMMRGRAAEADLVLQVELPDPALVVNVDVRAIKQVLINL 566

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           L+NAI FTP+GG++ +      +  V + V D G+G+   EL + ++PF QI  + +   
Sbjct: 567 LANAITFTPAGGRVRLGVRVHDDG-VAMYVADNGIGIPEEELPRLLRPFEQIDGADRRGR 625

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           EGTGLGL L+ A+V+ + G   + S    GT + +  P
Sbjct: 626 EGTGLGLALSNALVELHSGTLTLESQIGIGTTVTVRLP 663



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 41/393 (10%), Positives = 93/393 (23%), Gaps = 34/393 (8%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRL-CDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150
                 ++    + +G  +  +IG      ++        + +  +L             
Sbjct: 47  DLVWTVVNAGAEQLLGKPSDTLIGTSFLPAITAWPIPGAADRLLRVLDSGIPDA-FDLAL 105

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI-VHVNRVDNDPRALGKRLDKKFSHLHE 209
            I+G    + I + A         F+G  G  I               + L+++      
Sbjct: 106 RIDGQPSVMSIKVTA---------FAG--GLAIYARDVTDRRADEIRMRELEQRARRAER 154

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMK----NKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
                     + + +F   S            + +         + + L  +        
Sbjct: 155 RLIDALDASPDPFAVFDSSSRLVLCNQTWASMSGLGDARLLPGRRFEDLLRQVSIGADPA 214

Query: 266 ESSLPEQEDF--------HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
                  E F           +       Q  G +    +   +     N  +     + 
Sbjct: 215 NVGFDTIEAFIQWRLVRHRNADGEPIQITQKDGRVFLIRERRMDDGGSVNVATEITELER 274

Query: 318 GENLTPETVDKCPIPFFVYS-HGNLFYANPSFL-------LLTKYKSVDDIEIAGGLSTL 369
              L  +TVD       ++     L   N SF                + +      S  
Sbjct: 275 SRRLLRDTVDATEQAVALFDREERLVIWNQSFELFSPAVTFRVGMTLEETVLTVTKTSAS 334

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
                     A + + L R   T +   +    I   RE   A   +     +     + 
Sbjct: 335 TMHIDGRPVTAAERLALPRGSFTELERRSADGRIFLIRERLTADGGVVITATDATDLKVK 394

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
           +  +E +       +   E     L  + +  +
Sbjct: 395 EQTLEAQVQALHAARADAEQHAEHLARMTDMLT 427



 Score = 48.5 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/131 (10%), Positives = 44/131 (33%), Gaps = 14/131 (10%)

Query: 451 VMQLCSILEATSDGIAIINR---------EGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
              L ++L++   G+  +           + +    N    +L G P + ++   F   +
Sbjct: 18  RELLQALLDSAFQGLMALRPVLGGDGKTVDLVWTVVNAGAEQLLGKPSDTLIGTSFLPAI 77

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDI 561
                      L  +L   +    +        + +     + IK   F+   ++   D+
Sbjct: 78  TAWPIPGAADRLLRVLDSGIPDAFDLALRI---DGQ--PSVMSIKVTAFAGGLAIYARDV 132

Query: 562 SEWKQEKNKLS 572
           ++ + ++ ++ 
Sbjct: 133 TDRRADEIRMR 143


>gi|134291128|ref|YP_001114897.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia vietnamiensis
           G4]
 gi|134134317|gb|ABO58642.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia vietnamiensis
           G4]
          Length = 766

 Score =  333 bits (854), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 100/529 (18%), Positives = 201/529 (37%), Gaps = 31/529 (5%)

Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKY 354
           +  +    +   +                 +D  P         G + Y N +   LT  
Sbjct: 103 AVAAMLRDTRLTNDRARRREAAARERLEAILDALPHGVIAADTQGRVTYLNAAAAELTGC 162

Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS-LAM 413
            S   ++        L       +  + P          ++A +  H +Q   +++ + +
Sbjct: 163 SSDAALQEPVRDVVRLFD----RDERLVPTTALDRALAGVSAQSDQHWLQRRGDSAPVPI 218

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
             I     +          +  + +  R      E   +QL ++++A+ D I  I+ +G 
Sbjct: 219 AEIARPLVDAHGNIDGAVLVLRDALAQR---AAAETSRLQL-AVVDASPDAIVGIDAQGR 274

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
           I+S N A  ++FGY       +     +      +  + LT               L   
Sbjct: 275 IVSWNGAAQRIFGYDEAHAHGRALDTLVA--QRWLRRYPLTVSFETLREPIGPLEVLCVR 332

Query: 534 KEEKLLSLRIIIKKLPFSSCYSLTM------------HDISEWKQEKNKLSHAKKIAEKE 581
           ++ +     +    +   +   + +             D+   ++       A++ A+  
Sbjct: 333 RDGRRFRASVSACPVRGDARNCVALSLTLRETRVQRRRDL-RTQRSLQGARTARERADTS 391

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
           +  K + LA VSHE+RTPL  I G+ EV+++       +    +  + IDRS + +  +V
Sbjct: 392 NRLKDELLATVSHELRTPLNVIYGWVEVLRS----ASDDALQQQAIDAIDRSAHSLTRMV 447

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701
            D+LD S + +GK+ L   PV +    ++A S  Q  A+   I +      +   +  D 
Sbjct: 448 GDILDASSLATGKLRLDAMPVDVVRLFADATSAFQTAASAAGIALEFDCTASACVVSGDA 507

Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761
             ++Q+  N++SNA+ FTP+GG + ++ TH      +L V DTG G+ +  +      F 
Sbjct: 508 ERLRQMLSNLVSNALKFTPAGGAVTVTLTH-DAAHAVLAVGDTGQGIASEFIPYVFDMFR 566

Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFP 809
           +   S      G GLGL + + + + + G+  + S    +G    +  P
Sbjct: 567 RADGSPASPRRGLGLGLSIVRHIAELHGGEVRVDSAGRNRGATFTVTLP 615



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/378 (8%), Positives = 88/378 (23%), Gaps = 24/378 (6%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID----PNNHIGDLLKRQNTWYG 145
           D  G +  ++    +  G  +   +   + DV  +   D    P   +   L   +    
Sbjct: 144 DTQGRVTYLNAAAAELTGCSSDAALQEPVRDVVRLFDRDERLVPTTALDRALAGVSAQSD 203

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +       G +  VPI   A P+   +    G     ++             +       
Sbjct: 204 QH-WLQRRGDSAPVPIAEIARPLVDAHGNIDGA--VLVLRDALAQRAAAETSRLQLAVVD 260

Query: 206 HLH------EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
                    + +    S       IF       H R  + + +      +   V      
Sbjct: 261 ASPDAIVGIDAQGRIVSWNGAAQRIFGYDEAHAHGRALDTLVAQRWLRRYPLTVSFETLR 320

Query: 260 PLLTSEE--------SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
             +   E                   +  +         TL+    +    L  +     
Sbjct: 321 EPIGPLEVLCVRRDGRRFRASVSACPVRGDARNCVALSLTLRETRVQRRRDLRTQRSLQG 380

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEI--AGGLSTL 369
           +    E  + +    D+  +    +           ++ + +  S D ++      +   
Sbjct: 381 ARTARERADTSNRLKDEL-LATVSHELRTPLNVIYGWVEVLRSASDDALQQQAIDAIDRS 439

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
             +      + +    L        A    +  +  +  ++          A +F     
Sbjct: 440 AHSLTRMVGDILDASSLATGKLRLDAMPVDVVRLFADATSAFQTAASAAGIALEFDCTAS 499

Query: 430 QNGIEPEDVDTRINKRKM 447
              +  +    R     +
Sbjct: 500 ACVVSGDAERLRQMLSNL 517



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/230 (9%), Positives = 56/230 (24%), Gaps = 5/230 (2%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           IDA G +   +    +  G       G  L  +     +     +    +      G   
Sbjct: 269 IDAQGRIVSWNGAAQRIFGYDEAHAHGRALDTLVAQRWLRRYP-LTVSFETLREPIGPLE 327

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           +  +          ++A P+    R          +   RV        +R  +      
Sbjct: 328 VLCVRRDGRRFRASVSACPVRGDARNCVALS--LTLRETRVQRRRDLRTQRSLQGARTAR 385

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKN--KVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
           E     + ++ E     S +   P   +    +V       A +   +        +   
Sbjct: 386 ERADTSNRLKDELLATVSHELRTPLNVIYGWVEVLRSASDDALQQQAIDAIDRSAHSLTR 445

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
                 +                  ++  +  +  + +  +   ++  FD
Sbjct: 446 MVGDILDASSLATGKLRLDAMPVDVVRLFADATSAFQTAASAAGIALEFD 495


>gi|289207719|ref|YP_003459785.1| multi-sensor hybrid histidine kinase [Thioalkalivibrio sp. K90mix]
 gi|288943350|gb|ADC71049.1| multi-sensor hybrid histidine kinase [Thioalkalivibrio sp. K90mix]
          Length = 697

 Score =  333 bits (853), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 100/421 (23%), Positives = 193/421 (45%), Gaps = 18/421 (4%)

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI--------NKRKMEIEVMQLCSILE 459
            N   +   P     Q    + + G     +            ++  ++ +  +L ++LE
Sbjct: 127 GNLCIIDTRPRRLDEQEVTALREFGEIATSLLREYLARRDLGHSRSALDAQGQRLAAVLE 186

Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL 519
             + GI  I+  G I   N A  +LF YP E +L    ++ +        + YL      
Sbjct: 187 TAAAGIIQIDHTGHIEQFNSAAERLFDYPAEQVLGHNVSMLMPARWAHEHDDYLRHYRET 246

Query: 520 DLRQTLE--KITLGSTKEEKLLS--LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575
              + +   +   G  ++       L +   ++     Y   + D+++  + + +     
Sbjct: 247 GQARVIGSGREVEGLRRDGSTFPMQLAVSEVRIEEQPHYIGIVTDLTDLHESQRR---EL 303

Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
             AE+ +  KS+FL+ +SHE+RTPL +I+GFS++++  R  PL   R      +I+RSG 
Sbjct: 304 AEAERANRAKSEFLSSMSHELRTPLNSILGFSQLMRADRTHPLP-ERQQRQVEHIERSGQ 362

Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNI 694
            +L ++ND+LD+S+IE+G+M +  EP      ++E   +++  A E+ I +        +
Sbjct: 363 HLLALINDILDLSRIEAGRMAMSLEPTDPAMTLAECHGMIEGEARERGIQLDFPPPEPAL 422

Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELE 754
           P + AD   +KQ+ LN++SNAI +    G + +  T      +  RVRDTG+G+      
Sbjct: 423 PAVQADHTRLKQVLLNLVSNAIKYNRDKGIVRVRVTPMPEGRMEFRVRDTGLGIPEDRRA 482

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           +  +PF ++   +    +G+G+GL +++ +V    G+    S   +GT      P+  T+
Sbjct: 483 ELFRPFSRL-GHETGAIQGSGIGLVISRELVRHMGGELEYQSREGEGTDFFFTLPMSCTA 541

Query: 815 H 815
            
Sbjct: 542 E 542



 Score = 44.6 bits (104), Expect = 0.061,   Method: Composition-based stats.
 Identities = 28/270 (10%), Positives = 76/270 (28%), Gaps = 21/270 (7%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV----SDILHIDPNNHIGDLLKRQNTW 143
            ID  G++++ +    +     A +++G  +  +        H D   H  +  + +   
Sbjct: 194 QIDHTGHIEQFNSAAERLFDYPAEQVLGHNVSMLMPARWAHEHDDYLRHYRETGQARVIG 253

Query: 144 YGKTTL-WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
            G+       +G+   + + ++ + I  +          GIV      ++ +   + L +
Sbjct: 254 SGREVEGLRRDGSTFPMQLAVSEVRIEEQPHYI------GIVTDLTDLHESQR--RELAE 305

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
                    +  SS+  E     +       L   ++   L E    + + ++     LL
Sbjct: 306 AERANRAKSEFLSSMSHELRTPLNSILGFSQLMRADRTHPLPERQQRQVEHIERSGQHLL 365

Query: 263 T--------SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
                    S   +          +      + +        +   +       P+L A 
Sbjct: 366 ALINDILDLSRIEAGRMAMSLEPTDPAMTLAECHGMIEGEARERGIQLDFPPPEPALPAV 425

Query: 315 FDEGENLTPETVDKCPIPFFVYSHGNLFYA 344
             +   L    ++             +   
Sbjct: 426 QADHTRLKQVLLNLVSNAIKYNRDKGIVRV 455


>gi|222085322|ref|YP_002543852.1| two-component sensor histidine kinase protein [Agrobacterium
           radiobacter K84]
 gi|221722770|gb|ACM25926.1| two-component sensor histidine kinase protein [Agrobacterium
           radiobacter K84]
          Length = 771

 Score =  333 bits (853), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 123/529 (23%), Positives = 224/529 (42%), Gaps = 50/529 (9%)

Query: 317 EGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
           E        + +     + +      F+ + S   +    + D          L+     
Sbjct: 254 ESNMRVETALSRGRCGLWDFDFASREFFWSRSMYDMLGLPAADRPLSFADAERLMH---- 309

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
            D+N++  +    +          L  I+  + + + M              +   GI  
Sbjct: 310 PDDNSLHTLARSITRGNAGQVDQIL-RIRHAKGHYVWMRARAQVIRTNSGR-VHMIGIAM 367

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
           +  +     ++      +L   +E TS+   + ++   ++  N    + +G P   ++  
Sbjct: 368 DVTEQHRLAQRYAEADQRLADAIECTSEAFVLWDKNDRLVMCNDHFQQAYGLPNGVLVP- 426

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555
                      +     +   +    R    + T     +E+ L +     +        
Sbjct: 427 --GTERAVVNAAAARPIIERRIVDPGRSNHSQTTEVQLADERWLQINERRTR---DGGLV 481

Query: 556 LTMHDISEWKQEKNKLSH-----------------------------------AKKIAEK 580
               DI++ K+ + +L                                      K+ AE 
Sbjct: 482 SVGTDITQLKRNQERLRESERRLMATINDLSASRQILERQKAELSTANTNYLAEKERAEA 541

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            +  KS+FLA +SHE+RTPL AI+GFSE++++Q FGPLG+ RY EYA  I  SG  +L++
Sbjct: 542 ANKAKSEFLANMSHELRTPLNAILGFSEILQDQMFGPLGSSRYNEYAKDIHDSGKHLLNV 601

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILAD 700
           +ND+LD+SKIE+G + L  E + L   + E + L  + A  K I +  S ++ I ++ AD
Sbjct: 602 INDILDMSKIEAGHIKLSCEKIDLAPLIEECLRLTSIPAACKNIHVEQSISSGI-KLTAD 660

Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760
            R++KQI LN+LSN++ FT +GG+I + T    +  V+L + DTG+G+    L K  +PF
Sbjct: 661 RRAMKQILLNLLSNSVKFTNNGGRIAVRTRKVDDA-VVLTIADTGIGIPKSALSKIGQPF 719

Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            Q+ +       G+GLGL +++++   + G+  I S    GT+I I  P
Sbjct: 720 EQVQSQYAKSKGGSGLGLAISRSLTLLHHGRMRIRSREGIGTVIAIRIP 768



 Score = 55.0 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 29/287 (10%), Positives = 78/287 (27%), Gaps = 24/287 (8%)

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244
            V R  +      +   +  + L   + G    +    + F  +S    L +      L+
Sbjct: 241 QVKRTRDADEIFLESNMRVETALSRGRCGLWDFDFASREFFWSRSMYDMLGLPAADRPLS 300

Query: 245 EYYAH-----KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
              A       D+ L T    +       + +         +    +     ++ NS   
Sbjct: 301 FADAERLMHPDDNSLHTLARSITRGNAGQVDQILRIRHAKGHYVWMRARAQVIRTNSGRV 360

Query: 300 ---FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYK 355
                 +       L+  + E +    + ++     F ++  +  L   N  F       
Sbjct: 361 HMIGIAMDVTEQHRLAQRYAEADQRLADAIECTSEAFVLWDKNDRLVMCNDHFQQAYGLP 420

Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
           +   +              + +  A +P++  R      +  ++   +Q   E  L +  
Sbjct: 421 NGVLVPG--------TERAVVNAAAARPIIERRIVDPGRSNHSQTTEVQLADERWLQINE 472

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
                            +  +    + N+ ++     +L + +   S
Sbjct: 473 RRTRDG-------GLVSVGTDITQLKRNQERLRESERRLMATINDLS 512



 Score = 38.5 bits (88), Expect = 5.3,   Method: Composition-based stats.
 Identities = 24/250 (9%), Positives = 48/250 (19%), Gaps = 10/250 (4%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            W+ D        S  +   +G  A       L        + P+++    L R  T   
Sbjct: 270 LWDFDFASREFFWSRSMYDMLGLPAAD---RPLSFADAERLMHPDDNSLHTLARSITRGN 326

Query: 146 ----KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
                  L        YV +   A  I + +         GI       +         D
Sbjct: 327 AGQVDQILRIRHAKGHYVWMRARAQVIRTNSGRV---HMIGIAMDVTEQHRLAQRYAEAD 383

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
           ++ +   E       +  +   +                  +        +         
Sbjct: 384 QRLADAIECTSEAFVLWDKNDRLVMCNDHFQQAYGLPNGVLVPGTERAVVNAAAARPIIE 443

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
               +           + L      Q       +                     E E  
Sbjct: 444 RRIVDPGRSNHSQTTEVQLADERWLQINERRTRDGGLVSVGTDITQLKRNQERLRESERR 503

Query: 322 TPETVDKCPI 331
              T++    
Sbjct: 504 LMATINDLSA 513


>gi|261417885|ref|YP_003251567.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y412MC61]
 gi|319767303|ref|YP_004132804.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y412MC52]
 gi|261374342|gb|ACX77085.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y412MC61]
 gi|317112169|gb|ADU94661.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y412MC52]
          Length = 597

 Score =  333 bits (853), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 91/364 (25%), Positives = 155/364 (42%), Gaps = 24/364 (6%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            +  E  QL SIL + +DG+   NR+G IL TN    +          +      +    
Sbjct: 251 ALNQEKEQLASILSSMADGVITFNRDGEILITNPPAERFLQ--AWYFEQGNDAEAMAP-L 307

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
           P  +      ++  +  Q+ E    G T     + L   +            + D++E +
Sbjct: 308 PPQVKELFARVVREEKEQSTEVTLQGRT----WVILMTPLYGKTMVRGAVAVLRDMTEER 363

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           +                  + DF+A VSHE+RTP+  + G+SE I +            E
Sbjct: 364 RL--------------DKLRKDFIANVSHELRTPIAMLQGYSEAIIDDI--AASEEEKKE 407

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
            A  I      +  +VNDLLD++++E+G + L +E V L   +   I      A EK+I 
Sbjct: 408 MAKVIYDESLRMGRLVNDLLDLARMEAGHIELEYEQVKLVPYIERVIRKFYGLAKEKQIE 467

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +   F +    I  D   ++Q+  N++ NAI  T SGG + +    + +  V + V+D+G
Sbjct: 468 LTAEFRDRDIEIALDPDRIEQVLTNLIDNAIRHTESGGTVRLIIEPSGDG-VTIHVQDSG 526

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
            G+   +L    + F +   ++     GTGLGL +AK +V+A+ G   + S   +GT   
Sbjct: 527 SGIPEEDLPFVFERFYKADKARTRSRSGTGLGLAIAKNIVEAHKGLITVHSKLNEGTTFS 586

Query: 806 IIFP 809
              P
Sbjct: 587 FYLP 590


>gi|289678178|ref|ZP_06499068.1| PAS [Pseudomonas syringae pv. syringae FF5]
          Length = 425

 Score =  333 bits (853), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 102/415 (24%), Positives = 181/415 (43%), Gaps = 35/415 (8%)

Query: 428 MPQNGIEPEDVDTRINK-------RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
           +    I  ++   +  +       +++  +     S++E+  D + + + +GII   N+ 
Sbjct: 1   IGYLLIGTDNTARKQEEEAQALLDQRLRDQQFYTRSLIESNIDALMMTDPQGIISDVNKQ 60

Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
           +  L G   ++++  P   F     P+  +  +  +LS       E         E ++S
Sbjct: 61  MMALTGRTRDELIGAPCKNFF--TDPASADAAIKRVLSEHKVSDYELTVRAYDGTETVVS 118

Query: 541 LRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
                                D++E K+ +  L       E  S  KS+FLA +SHE+RT
Sbjct: 119 YNAATFHDRDRKLKGVFAAARDVTERKRFERTLEEKNIELEHASHMKSEFLATMSHELRT 178

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
           PL A+IGFSE +++   G + +     Y   I  SG  +L ++ND+LD+SK+E+G M L 
Sbjct: 179 PLNAVIGFSEALRDGMVGDMTDA-QRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLE 237

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718
            E V LDE +S ++ +V+  A  + I ++         +  D R  KQI  N+L+NA+ F
Sbjct: 238 LESVDLDELLSNSLLIVREQAALQHIQLKLETEAEFGELELDRRKTKQIVYNLLANAVKF 297

Query: 719 TPSGGQIIISTTHTS-----------------------NEEVILRVRDTGVGMTNYELEK 755
           +  GG + ++                             + + L V DTG+G+   ++ K
Sbjct: 298 SEPGGWVTLAVRLVPASQAGLIDGDWPAYGFALPSGNCEQFLELSVSDTGIGIAQSDMNK 357

Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             K F QI +    + EGTGLGL + K + + + G   + S    G    +  P+
Sbjct: 358 LFKAFSQIDSGLARKFEGTGLGLAMVKQLTELHGGCVAVASVKDLGARFVVWLPI 412



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/238 (11%), Positives = 66/238 (27%), Gaps = 10/238 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            D  G + ++++++    G    ++IG    +         +  I  +L        + T
Sbjct: 48  TDPQGIISDVNKQMMALTGRTRDELIGAPCKNFFTDP-ASADAAIKRVLSEHKVSDYELT 106

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           +   +GT     +   A   + R+R+  G   F                +  + +  H  
Sbjct: 107 VRAYDGTETV--VSYNAATFHDRDRKLKGV--FAAARDVTERKRFERTLEEKNIELEHAS 162

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK-VSSLTEYYAHKDDVLKTEKYPLLTSEES 267
            +K    +    +              +++  V  +T+        +      LL+    
Sbjct: 163 HMKSEFLATMSHELRTPLNAVIGFSEALRDGMVGDMTDAQRRYIGDIFNSGQHLLS---- 218

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
            + +  D   +     T +     L      S   +  +          E E    E 
Sbjct: 219 LINDILDLSKVEAGMMTLELESVDLDELLSNSLLIVREQAALQHIQLKLETEAEFGEL 276



 Score = 45.8 bits (107), Expect = 0.029,   Method: Composition-based stats.
 Identities = 16/162 (9%), Positives = 44/162 (27%), Gaps = 12/162 (7%)

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTK 353
           N +++  E         L        +L    +D           G +   N   + LT 
Sbjct: 10  NTARKQEEEAQALLDQRLRDQQFYTRSLIESNIDAL---MMTDPQGIISDVNKQMMALTG 66

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
               + I            P  +D    + +  ++     +   A              +
Sbjct: 67  RTRDELIGAP--CKNFFTDPASADAAIKRVLSEHKVSDYELTVRAY-------DGTETVV 117

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
           ++      ++  +         +  + +  +R +E + ++L 
Sbjct: 118 SYNAATFHDRDRKLKGVFAAARDVTERKRFERTLEEKNIELE 159


>gi|269793059|ref|YP_003317963.1| multi-sensor hybrid histidine kinase [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100694|gb|ACZ19681.1| multi-sensor hybrid histidine kinase [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 877

 Score =  333 bits (853), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 118/575 (20%), Positives = 219/575 (38%), Gaps = 23/575 (4%)

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
             H +D    ++   L  EE S      F  ++ +           ++ S      +   
Sbjct: 63  VIHPEDQHLFDELLRLAQEEGSGSVDLRFCGMDDSCKWVNLRAVGHRDESGVCKYVVGVA 122

Query: 307 NHPSLSAYFDEGENLTP----ETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIE 361
              S    + E   L+       +D     F  V   GN+ Y N SF  +  Y+      
Sbjct: 123 RDISEVRRYQEELKLSEMRWKAVLDNAGEAFLTVDQSGNVTYVNKSFESMLGYRRDQIEG 182

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
            +           L  ++  + +    S R           +  +  + +    I     
Sbjct: 183 RSLWT--------LVPDDQRQVLDYQWSMRHVKWQRRYEIDLLRSDGSRMPARVIATVVK 234

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
           +   ++    G   +    R   R+ +  +  L ++L+     +   +  G     NRA 
Sbjct: 235 DLGEDHYLHFGFIDDLTQIRRIDREQKDRLRFLRTLLDTIPSPVFYKDSRGRYQGFNRAF 294

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
            ++F   +  +     +   +      +N  L  + +        K   G      ++  
Sbjct: 295 QEVFQ-AIGPMGEFDMSYLPDDFVARDVNSDLDLLRNPGAMCFHFKFGEGDVSRHFVVHK 353

Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
                 +     +   M +I+E K+ + +L  AK+ AE  S  K  F++ +SHEIRTP+ 
Sbjct: 354 ATFFDHVGRVGGFVGVMTEITEQKRMEAELREAKERAEASSRAKMAFVSHISHEIRTPMN 413

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           A++G SE++ +       +P   E    I ++   + +I+ D+LD++ +E+GK+ L    
Sbjct: 414 AVVGLSEMLLDSC----EDPEIREDLELIHQASMSLTEILGDILDLAAVEAGKLRLEESS 469

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTP 720
            S+++  +   SL+   A  K +  R    +      + D   ++Q+  N+LSNAI FTP
Sbjct: 470 FSMEDLCAPVFSLMGAEAKRKGLEFRGKVEDGASGHFVGDQVRIRQLLWNLLSNAIKFTP 529

Query: 721 SGGQIIISTTHTS-NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
           SG    +S   ++    V+  V DTGVG+   +L++    F +       R  GTGLGL 
Sbjct: 530 SGS---VSARISASEGGVLFEVSDTGVGIEEEQLDRIFDYFERGEELLTRRIPGTGLGLA 586

Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           L K +V    G   + S   +G+   I  PL    
Sbjct: 587 LCKKLVSLMGGAIRVRSRRGEGSCFSIWLPLRRDH 621



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/246 (8%), Positives = 64/246 (26%), Gaps = 16/246 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D  G +  +++     +G    ++ G  L  +         ++   +   +     +  
Sbjct: 156 VDQSGNVTYVNKSFESMLGYRRDQIEGRSLWTLVPDDQRQVLDYQWSMRHVKWQRRYEID 215

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIV-------HVNRVDNDPRALGKRLD 201
           L   +G+ +   +    +     +     +  FG +        ++R   D     + L 
Sbjct: 216 LLRSDGSRMPARVIATVVKDLGED----HYLHFGFIDDLTQIRRIDREQKDRLRFLRTLL 271

Query: 202 KKFSHLH---EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
                     + +  +    +   ++F    P     M            + D  L    
Sbjct: 272 DTIPSPVFYKDSRGRYQGFNRAFQEVFQAIGPMGEFDMSYLPDDFVARDVNSDLDLLRNP 331

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
             +         E +      +++ T   + G +        E    +   +      E 
Sbjct: 332 GAMC--FHFKFGEGDVSRHFVVHKATFFDHVGRVGGFVGVMTEITEQKRMEAELREAKER 389

Query: 319 ENLTPE 324
              +  
Sbjct: 390 AEASSR 395


>gi|168703719|ref|ZP_02735996.1| sensory box histidine kinase/response regulator [Gemmata
           obscuriglobus UQM 2246]
          Length = 902

 Score =  333 bits (853), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 94/791 (11%), Positives = 234/791 (29%), Gaps = 84/791 (10%)

Query: 72  NTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-- 129
           + F               D  G    ++    + IG  A +++G  LC++     + P  
Sbjct: 7   DDFRAILDRLPTPVI-GFDRGGRHDFVNPAACRMIGRSADQLLGRTLCEIGLPPDLGPEL 65

Query: 130 NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRV 189
           + ++  + +    +   T   P  G    + + L   P    +                V
Sbjct: 66  DANVARVRESGAPFA-HTVSLPSPGGTAVLLVHLVPRP----DGGV-----LVTATDVSV 115

Query: 190 DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL-RMKNKVSSLTEYYA 248
                   +  ++++    E           K  I    S    +       +   +   
Sbjct: 116 QARAEQALRYSEERYRQTIEAAFDAIVTTDPKGTIIGWNSGAERVFGYPASDALGRDVEL 175

Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKK---------QYFGTLQNNSKES 299
                   E +  + + + +   +     + L    K            +     + + +
Sbjct: 176 IVPPRYAAEHHAAMAAFDPANSSRMRSRVVELPAMRKGGIEFPAEITLAYWGAGADRRFT 235

Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPI--PFFVYSHGNLFYANPSFLLLTKYKSV 357
                     +      + E      ++       F +   G +   N     +  Y + 
Sbjct: 236 AIVRDITARRAAEQALRDSEERHRLLIESVTDYAIFMLDPDGRVATWNAGAQRIKGYTAD 295

Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
           + +      S        +   A                +     ++ +         + 
Sbjct: 296 EIVGR--HFSVFYPPESTACTEAELETAAR-----VGRFAEEGWRVRKDGARFWG-HVVI 347

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
               +          +  +  D R  ++ +     +   ++E  ++ +     +G     
Sbjct: 348 TALRDPTGRLTGFAKVTRDLTDRRAAEQALRDSEQRYRQVVEDQTETVCRFRPDGTFTFV 407

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
           N    + FG   ++++ +P+   +       +   L  +   +    +E   + +    +
Sbjct: 408 NDVYCRTFGKRADELIGRPWHPVVHPGDLDHVETELARMSPDNPVVRIENRIVNAGGRTR 467

Query: 538 LLSLRIIIKKLPFSSCYS---LTMHDISEWKQEK---------------NKLSHAKKIAE 579
            +   +       +           D+++ +  +                +    + +  
Sbjct: 468 WME-FVNRGFYSPAGGLVEIQAVGRDVTDRRAAEDARRELEADLRAKEQQQRYERQLLQS 526

Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639
           ++          ++H+    LTA++G++  +   R  P  N    E    I+ +     +
Sbjct: 527 QKLESLGVLAGGIAHDFNNLLTAVLGYA-SLSRMRLPP--NDPIAEDMKRIESAAQRAAE 583

Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA 699
           +   +L  +    G+       V L+    E   L+    ++K + ++ +    +P++ A
Sbjct: 584 LCQQMLAYA----GRGQFVVRAVDLNALTQEMTQLLGAVLSKKAV-LKYNLTIGLPQVQA 638

Query: 700 DLRSVKQIALNILSNAIHF-TPSGGQIIIST-----------------THTSNEEVILRV 741
           D   ++QI +N+++NA     P  G I ++T                        V L V
Sbjct: 639 DPTQLRQIVMNLITNASDAIGPKSGVITLTTGLIDADARYLTEIQAGAELDPGRYVYLEV 698

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            DTG GM+     K   PF         +  G GLGL   + +V A+ G   +++   KG
Sbjct: 699 SDTGCGMSEEVRAKIFDPFFTT------KFTGRGLGLAAVQGIVRAHKGAIKVYTQSGKG 752

Query: 802 TLIEIIFPLYD 812
           T  +++ P  D
Sbjct: 753 TTFKVLLPALD 763


>gi|292493747|ref|YP_003529186.1| PAS sensor protein [Nitrosococcus halophilus Nc4]
 gi|291582342|gb|ADE16799.1| PAS sensor protein [Nitrosococcus halophilus Nc4]
          Length = 767

 Score =  333 bits (853), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 102/647 (15%), Positives = 216/647 (33%), Gaps = 45/647 (6%)

Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA 248
            +   R    RL  +             ++                     +     +  
Sbjct: 6   EELREREAQYRLQAQIIDQIHDAVTSIDLKGAITYWNKGAERLSGYSAVEALGKHISFIY 65

Query: 249 HKDDVLKTEKYPLLTSEESSLPEQE-DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
            +++    E+  +   EE    E E      +   +        L +        + +  
Sbjct: 66  PEEEHTFLEQQVIRPLEEKGHHEVEVRLRRKSGEDFYAHLALSLLMDQEGAVTGMIGYAM 125

Query: 308 HPS----LSAYFDEGENLTPETVDKCPIPFFVYSH--GNLFYANPSFLLLTKYKSV--DD 359
             +          E E    +  D  P+  +      G L Y N   + L   + +  DD
Sbjct: 126 DITMRKQAEEALRESEARYRKLADLLPVAVYTCKAPKGTLQYYNQQAVELWGREPLCNDD 185

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
            E   G   L      + ++   P+ +  +    I+   R   I+    + +        
Sbjct: 186 EEQLCGPLKLYQRDVATLSHPQSPMAIALTQG--ISYRNREVIIERPDGSRVIALANIDP 243

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR-EGIILSTN 478
             N+  + +    +  +    +  +  +     +  ++ + +  GI ++N  +   +  N
Sbjct: 244 IKNREGKVIEIINVLQDITYLKRAEEALRDSEARYRALFDGSPSGILMLNPSDLTFVEFN 303

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
                  GY  E+  +          +P     +    +        E  T   TK  K+
Sbjct: 304 DQAHLQLGYSREEFAQLTLPDIEAATSPEQSLEHACYFVQALGIDKQEFETHYRTKRGKI 363

Query: 539 LSLRIIIKKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
             + +  + L             DI+E K+ +       K  ++    K +FLA ++HE+
Sbjct: 364 HDVLVTGRPLQIQGHTYLCAVFQDITERKRAE-------KALQEADRRKDEFLALLAHEL 416

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           R PL  I    +++K Q    L  P   +    I+R  N +  +V+DLLD+++I  G++ 
Sbjct: 417 RNPLVPIRNAVQLLKLQSEPSL--PHLQQACGLIERQLNHLTRLVDDLLDVARITRGRIT 474

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716
           L    V +   V +A+  ++   +EK   +         ++ AD   + Q+  N+L NA 
Sbjct: 475 LQKSRVDMARCVVQAVEAIRSLLDEKGHDLTLKLPPFPLQVEADPVRLAQVIENLLHNAA 534

Query: 717 HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG-----------QIPN 765
            +T  GG++ ++ T    ++ +L V D G+G+    L      F            Q   
Sbjct: 535 KYTHEGGRVTLTLT-QEGQQAVLTVTDNGIGIPPELLPHIFDCFAYSERPLNHPSPQGGL 593

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFPLY 811
              +           A+++++ + G+    S    +G+   +  PL 
Sbjct: 594 GLGLSL---------ARSLLEMHGGQIGATSPGLDQGSTFTVQLPLA 631



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/394 (8%), Positives = 97/394 (24%), Gaps = 33/394 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID-PNNHIGDLLKRQNTWYGKT 147
           ID  G +   ++   +  G  A + +G  +  +            +   L+ +     + 
Sbjct: 32  IDLKGAITYWNKGAERLSGYSAVEALGKHISFIYPEEEHTFLEQQVIRPLEEKGHHEVEV 91

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
            L    G + Y  + L+ L    +    +G  G+ +     +        +  + ++  L
Sbjct: 92  RLRRKSGEDFYAHLALSLL--MDQEGAVTGMIGYAM--DITMRKQAEEALRESEARYRKL 147

Query: 208 HEIKKGHSSVEKEKYDIF--------SQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
            ++        K                    P      +          +D    +   
Sbjct: 148 ADLLPVAVYTCKAPKGTLQYYNQQAVELWGREPLCNDDEEQLCGPLKLYQRDVATLSHPQ 207

Query: 260 P----LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP----SL 311
                 LT   S    +      + ++         ++N   +  E ++           
Sbjct: 208 SPMAIALTQGISYRNREVIIERPDGSRVIALANIDPIKNREGKVIEIINVLQDITYLKRA 267

Query: 312 SAYFDEGENLTPETVDKCPIPFFVY--SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
                + E       D  P    +   S       N    L   Y   +        + L
Sbjct: 268 EEALRDSEARYRALFDGSPSGILMLNPSDLTFVEFNDQAHLQLGYSREE-------FAQL 320

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
                 +  +  + +         +    +     +  +       +   +  Q   +  
Sbjct: 321 TLPDIEAATSPEQSLEHACYFVQALGIDKQEFETHYRTKRGKIHDVLVTGRPLQIQGHTY 380

Query: 430 QNGIEPEDVDTRINKRKMEI---EVMQLCSILEA 460
              +  +  + +  ++ ++       +  ++L  
Sbjct: 381 LCAVFQDITERKRAEKALQEADRRKDEFLALLAH 414


>gi|172036692|ref|YP_001803193.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
           51142]
 gi|171698146|gb|ACB51127.1| probable two-component hybrid sensor and regulator [Cyanothece sp.
           ATCC 51142]
          Length = 835

 Score =  333 bits (853), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 91/381 (23%), Positives = 189/381 (49%), Gaps = 26/381 (6%)

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
           +  E    +  + ++  +  +   ++    +GI +++ EG I   N A   +F  P++ +
Sbjct: 214 LRREIKRRKNTEFQLIKQENKFKDLVYNIDNGIILVDTEGKIKFANPAALAIFEQPLQSL 273

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
           L   F + +  N                  + +E   + +  +   + + +   +    S
Sbjct: 274 LEYDFGIPIVSN------------------KPVELEIIKAKNKTGFVEMNVTFTEWEKES 315

Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
            Y +++ +I+E K+ +  L  AK+ A+  +  K++FLA VSHE+RTP+ AI+GF+E +  
Sbjct: 316 VYLVSIREITERKKAEEALIKAKEEADLANQAKTEFLANVSHELRTPMNAILGFAE-LLK 374

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
            +      P Y EY   I  S N +L ++NDLLDI+++E+GK+ L++   S+   ++E I
Sbjct: 375 LKLKAQEPPIY-EYIETIYNSSNSLLSLINDLLDINQVEAGKIELNYHGFSVRTLLTEII 433

Query: 673 SLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
           ++    A+++++ +     +N+P  I  D   ++QI +N++ N++ FT  G  I +S + 
Sbjct: 434 NIFSNQASKQQLQLLVDIQDNVPEFINFDSLRLRQILVNLIGNSLKFTSKG-YIKVSLSM 492

Query: 732 TSN----EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
            +       + + V+DTG+G+ + + ++  + F Q       R  G GLGL + + + + 
Sbjct: 493 QNLYGNYGTLKIEVQDTGIGIKDEDKQQIFEAFIQSQGQDNYRYGGNGLGLFITQKITEF 552

Query: 788 NMGKFYIFSTPAKGTLIEIIF 808
             G   + S   +G+   ++F
Sbjct: 553 LGGTITLDSEWGEGSTFTLMF 573


>gi|71906612|ref|YP_284199.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
 gi|71846233|gb|AAZ45729.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
          Length = 1064

 Score =  333 bits (853), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 109/566 (19%), Positives = 194/566 (34%), Gaps = 45/566 (7%)

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
           +P       +      +      +   S        H           +      + +D 
Sbjct: 269 IPTASSLDLVEQEFRRRLIVLLLISLASVGLARLFLHEMLDRKFGATIKELTRLKKALDN 328

Query: 329 CPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
            P   ++     +  YAN   L L      + ++  G          +S    +   +L 
Sbjct: 329 VPAYIYLKDAAHHYRYANAKTLSLFG-TDAESLKGKGD-EHFFPPETVSRLRQVDAQVLA 386

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
             +   I     +     + + ++                    GI  +    R+ +   
Sbjct: 387 GKNTDEI-----ITITDEHGQRAIYHEIKAPLWELDEKTPWGLCGISIDITQYRLAEEA- 440

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
              V +L   +E + + I   + EG I   N A   + GY  E+++ +   +    NTP 
Sbjct: 441 ---VARLSRAVEQSPESIVFTDLEGNIEYVNAAFLAITGYLREEVIGRNPRILQSGNTPR 497

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISE 563
                +   L            +   K+         I  +         Y     DI+E
Sbjct: 498 ERYDEMWATLKAGK--VWRGELINKRKDGSEYLELATISPIRQPDGKISNYIAIKADITE 555

Query: 564 WKQEKNKLSHAKKIAEKE------------------SSHKSDFLARVSHEIRTPLTAIIG 605
            ++ + +L   +   E+                   S  KS FLA +SHEIRTP+ AI+G
Sbjct: 556 QRKNQEELEKYRTGLERLVQQRTQELAVAKEAAEVASRAKSTFLANMSHEIRTPMNAIMG 615

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
              +++        N    +    I  +   +L I+ND+LD+SKIE+GKM L     S  
Sbjct: 616 LGYLLEQSPL----NTEQQDKVRKIHGAAKHLLSILNDVLDLSKIEAGKMTLDRCAYSPA 671

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725
           E ++   S++   A  K + + T   +  P  + D   ++Q  LN   NA+ FT  G  I
Sbjct: 672 EELTAVASMIGEDAQRKGLTVITETDDLPPFTIGDPTRLRQAILNFAGNAVKFTEHGS-I 730

Query: 726 IIS---TTHTSNEEV-ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
            +         +  +    V DTG G+      +    F Q  +S   R  GTGLGL ++
Sbjct: 731 RLRGEIAETQPDNYLLRFSVSDTGPGIAPELQARLFTAFEQADSSSTRRLGGTGLGLAIS 790

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEII 807
           + +     G   + ST  +G+   + 
Sbjct: 791 RHLSHLMGGDAGVDSTLGQGSTFWLT 816



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 20/153 (13%), Positives = 50/153 (32%), Gaps = 5/153 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI-DPNNHIGDLLKRQNTWYGKT 147
            D  G ++ ++       G    ++IG     +       +  + +   LK    W G+ 
Sbjct: 458 TDLEGNIEYVNAAFLAITGYLREEVIGRNPRILQSGNTPRERYDEMWATLKAGKVWRGEL 517

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                +G+       ++  PI   + + S +    I          +   ++       L
Sbjct: 518 INKRKDGSEYLELATIS--PIRQPDGKISNY--IAIKADITEQRKNQEELEKYRTGLERL 573

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV 240
            + +    +V KE  ++ S+        M +++
Sbjct: 574 VQQRTQELAVAKEAAEVASRAKSTFLANMSHEI 606



 Score = 40.0 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 20/249 (8%), Positives = 65/249 (26%), Gaps = 11/249 (4%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI-GDLLKRQNTW 143
           + +  DA  + +  + +     G  A  + G           +     +   +L  +NT 
Sbjct: 332 YIYLKDAAHHYRYANAKTLSLFGTDAESLKGKGDEHFFPPETVSRLRQVDAQVLAGKNTD 391

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYS-RNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
              T     +             P++    +   G  G  I               RL +
Sbjct: 392 EIITI---TDEHGQRAIYHEIKAPLWELDEKTPWGLCGISI--DITQYRLAEEAVARLSR 446

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
                 E      +  +   +  +         ++ +V           +  +     + 
Sbjct: 447 AVEQSPE--SIVFTDLEGNIEYVNAAFLAITGYLREEVIGRNPRILQSGNTPRERYDEMW 504

Query: 263 TSEESSLPEQEDF--HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
            + ++    + +      + ++Y +      ++    +   Y++ +   +      E   
Sbjct: 505 ATLKAGKVWRGELINKRKDGSEYLELATISPIRQPDGKISNYIAIKADITEQRKNQEELE 564

Query: 321 LTPETVDKC 329
                +++ 
Sbjct: 565 KYRTGLERL 573


>gi|17229338|ref|NP_485886.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17130936|dbj|BAB73545.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 680

 Score =  333 bits (853), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 92/385 (23%), Positives = 165/385 (42%), Gaps = 18/385 (4%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            ++     +  S+   +  GI   +  G    TN     + G    + L K +   +   
Sbjct: 146 AELRQSEERFRSLSTCSPIGIFETDTAGCCKYTNPRYQAICGLDATESLDKRWLESVHSE 205

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDIS 562
                    +  +      + E          + + +R             Y  T+ DI+
Sbjct: 206 DQERAIASWSTYIYQGGDYSDEFRFQTVDGSLRWVQVRSSPMLSGNGELLGYVGTLEDIT 265

Query: 563 EWKQEKN------KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
             KQ +       +   A++ AE  +  K +FLA +SHE+RTPLT+++G+S++++ ++  
Sbjct: 266 ARKQSEEIRAQVIREQTARQEAEATNRMKDEFLAVLSHELRTPLTSMLGWSKILRAKKLD 325

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
                R       I+R+ N  + ++ D+LD+S+I  G++ L+  PV+L   V  A+  V+
Sbjct: 326 EKATARA---LEAIERNANSQVQLIEDILDVSRIIRGQLRLNLSPVNLITVVEAALEAVR 382

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT------ 730
             A+ K + I T     +  +  D   ++QI  N+L+NAI FTP  GQ+ I         
Sbjct: 383 PLADTKNMTINTVLDYTLSPVSGDFARLQQIVWNLLTNAIKFTPKEGQVEIRLEGINGEL 442

Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
                   ++V DTGVG+ +  L K  + F Q  ++      G GLGL + + +V+ + G
Sbjct: 443 SDDLTHAQIQVIDTGVGIASEFLPKVFERFRQADSTTTRSHNGLGLGLAIVRHLVELHNG 502

Query: 791 KFYIFS-TPAKGTLIEIIFPLYDTS 814
                S    KG    + FPL   +
Sbjct: 503 TILAESPGVGKGATFTVRFPLIQEN 527



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/345 (8%), Positives = 91/345 (26%), Gaps = 22/345 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL-LKRQNTWY 144
            +  D  G  K  +       G  A + +  R  +       +         + +   + 
Sbjct: 166 IFETDTAGCCKYTNPRYQAICGLDATESLDKRWLESVHSEDQERAIASWSTYIYQGGDYS 225

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            +     ++G+     + + + P+ S N E  G+   G +           +  ++ ++ 
Sbjct: 226 DEFRFQTVDGSLR--WVQVRSSPMLSGNGELLGY--VGTLEDITARKQSEEIRAQVIREQ 281

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
           +   E +  +   ++    +  +   P    +        +    K      E      +
Sbjct: 282 TARQEAEATNRMKDEFLAVLSHELRTPLTSMLGWSKILRAKKLDEKATARALEAIERNAN 341

Query: 265 EESSLPEQ--EDFHTINLNQYTK--KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
            +  L E   +    I              T+   + E+   L+   + +++   D   +
Sbjct: 342 SQVQLIEDILDVSRIIRGQLRLNLSPVNLITVVEAALEAVRPLADTKNMTINTVLDYTLS 401

Query: 321 LTPETVDKCPIPFFVYSHGNLFYA-------------NPSFLLLTKYKSVDDIEIAGGLS 367
                  +     +      + +              N        +  +  I+   G++
Sbjct: 402 PVSGDFARLQQIVWNLLTNAIKFTPKEGQVEIRLEGINGELSDDLTHAQIQVIDTGVGIA 461

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
           +                     +   +  +   H ++ +    LA
Sbjct: 462 SEFLPKVFERFRQADSTTTRSHNGLGLGLAIVRHLVELHNGTILA 506


>gi|322693017|gb|EFY84895.1| putative histidine kinase HHK6p [Metarhizium acridum CQMa 102]
          Length = 1372

 Score =  333 bits (853), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 102/599 (17%), Positives = 206/599 (34%), Gaps = 54/599 (9%)

Query: 261  LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN------SKESFEYLSHRNHPSLSAY 314
            LL +E      +      +  +         ++++      +              ++  
Sbjct: 445  LLRTERPFASMRVGIVDRDGKRLIHDVLGEAIRDDVTGEFLAAVVTGRDVTVITEQITQI 504

Query: 315  FDEGENLTPETVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
             +  +       D  P   +  S   L  + N  +   T  +  + + +          P
Sbjct: 505  KERDDERFKLICDTMPQLVWTASPDGLHDFFNTRWYSYTGLRPEECLGME------WQMP 558

Query: 374  KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
               D+         RS  T               E    +      +     +     G 
Sbjct: 559  FHPDDRNEALTRWKRSLETGEPFVMEYRCRSKEGEWRWFLGRALAVRNKDSGDIEKWFGT 618

Query: 434  EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII------LSTNRAVSKLFGY 487
              +  ++   K   +    QL S++  +   I  ++    +      L  N     +   
Sbjct: 619  CTDVHESIETKFDAKRTRQQLLSVIAHSQVTIFTVDPNRRVNMLEGALIWNHTYEDVHD- 677

Query: 488  PVEDILRKPFTVFL-------EQNTPSVMNHYLTEILSLDLRQTL-EKITLGSTKEEKLL 539
            P    + +              +         + +IL     + + E          + L
Sbjct: 678  PSRWYIGENMHTVFNRLVDQPPEGEQLDFLQPIEDILQGRTTEDVKEHGLDDRWYRTRFL 737

Query: 540  SLRIIIKKLPFS------SCYSLTMHDISEWKQEKNKLSHAKKI----------AEKESS 583
             +         +            + D++E +  +  L    +           A++ + 
Sbjct: 738  PMYGKKTHDGKTTSDSTIEGVIGVIMDVTELRDREEALLKQSREKRKAVANEAAAKEANR 797

Query: 584  HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
             KS FLA +SHEIRTP+T ++G +E++ +       +    +Y + I  S   +L ++ND
Sbjct: 798  LKSQFLANMSHEIRTPITGVLGMAELLSHMDL----DEEQRDYLDNIQSSATSLLTVIND 853

Query: 644  LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR---ILAD 700
            +LD SK+ESG++++     SL   V E + +++     K +  ++   ++I     ++ D
Sbjct: 854  ILDFSKVESGRLDVEEVQFSLSLVVKEVVRMLRFAVERKNLDFQSDIGSDIENDMVVIGD 913

Query: 701  LRSVKQIALNILSNAIHFTPSG---GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757
               V+QI  N+L+N+I FT  G     +   +  + +  +   V DTG+G+     ++  
Sbjct: 914  PGRVRQIITNLLTNSIKFTNQGYVRFSVTTESETSDSINIKFVVEDTGIGIQEDVRKRLF 973

Query: 758  KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
            +PF Q   S   R  GTGLGL + K ++D   G+  + ST   GT      P      P
Sbjct: 974  QPFSQGDASTARRFGGTGLGLTICKNLLDLMHGRIILESTVDSGTKASFWIPFNKPHGP 1032



 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/213 (9%), Positives = 52/213 (24%), Gaps = 6/213 (2%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQNTW 143
             W     G     +       G    + +GM           +         L+    +
Sbjct: 522 LVWTASPDGLHDFFNTRWYSYTGLRPEECLGMEWQMPFHPDDRNEALTRWKRSLETGEPF 581

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRN-REFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
             +      EG   +      AL + +++  +    + FG         + +   KR  +
Sbjct: 582 VMEYRCRSKEGE--WRWFLGRALAVRNKDSGDIE--KWFGTCTDVHESIETKFDAKRTRQ 637

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
           +   +    +           +   +           V   + +Y  ++      +    
Sbjct: 638 QLLSVIAHSQVTIFTVDPNRRVNMLEGALIWNHTYEDVHDPSRWYIGENMHTVFNRLVDQ 697

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN 295
             E   L   +    I   + T+      L + 
Sbjct: 698 PPEGEQLDFLQPIEDILQGRTTEDVKEHGLDDR 730


>gi|197117407|ref|YP_002137834.1| bifunctional sodium solute symporter/sensor histidine kinase response
            regulator [Geobacter bemidjiensis Bem]
 gi|197086767|gb|ACH38038.1| sodium solute symporter and sensor histidine kinase response
            regulator, SSF and PAS domain-containing protein
            [Geobacter bemidjiensis Bem]
          Length = 1323

 Score =  333 bits (853), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 102/454 (22%), Positives = 188/454 (41%), Gaps = 51/454 (11%)

Query: 401  HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
              I ++RE    ++    E   +  E       + E +  RI ++ +     +L  I++ 
Sbjct: 651  RRIDYHREREQLLSLQAQELEEKVRER------DQEIMQRRIAEQALRDSERRLADIIDF 704

Query: 461  TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK---PFTVFLEQNTPSVMNHYLTEIL 517
              D   ++N +G ++  NRA  +  G   E +L K      +        ++   +    
Sbjct: 705  LPDPTFVVNAQGAVVIWNRAAEEFTGAKAEAMLGKAGNECAIPFYGMRRPLLLDMVLAPW 764

Query: 518  SLDLRQTLEKITLGSTK------------EEKLLSLRIIIKKLPFSSCYSLTM---HDIS 562
              +  + L    +                     ++ +              +    DI+
Sbjct: 765  RAEEIKPLYVRLVVEGGKIIGEGPVKSASRPHAYTMAMAAPLYDSEGEVIAVIESVRDIT 824

Query: 563  EWKQEKNKLSHAK------------------KIAEKESSHKSDFLARVSHEIRTPLTAII 604
            E K+ +++L   +                  + AE  +  KS FL+ +SHE+RTPL AI+
Sbjct: 825  ELKEGEDELKRHRAHLEELVRERTMELLVAKERAEVANQAKSAFLSSMSHELRTPLNAIL 884

Query: 605  GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
            G+++++K Q           +    +   G  +L ++ND+LD+ KIE+ KM L      L
Sbjct: 885  GYAQILKRQDN---LTDAQRQQLEIVRGCGEHLLSLINDVLDMGKIEAQKMELAELSFDL 941

Query: 665  DEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG 723
               + +  S+ ++ A+EK +  +    N +PR +  D R +KQI LN+LSNA+ +T  G 
Sbjct: 942  SALLGQVFSIAKVKADEKDLGFKYEELNRLPRAVRGDQRKLKQILLNLLSNAVKYTHRG- 1000

Query: 724  QIIISTTHTSNEEV-ILRVRDTGVGMTNYELEKAMKPFGQ-IPNSQQIRGEGTGLGLPLA 781
             + +   + S+  V    + DTG G+   +L    +PF Q     Q    EGTGLGL + 
Sbjct: 1001 CVTVRVRYHSSTGVFACEITDTGTGIPRDKLGIIFEPFVQLADGGQIR--EGTGLGLSIT 1058

Query: 782  KAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            + +V    G+  + S P  G+   +  PL   + 
Sbjct: 1059 RRLVSLMHGQVTVESEPGAGSTFRVELPLPTVTE 1092



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/275 (11%), Positives = 75/275 (27%), Gaps = 35/275 (12%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
           T+ ++A G +   +    +  G  A  M+G    + +   +      + D++     W  
Sbjct: 709 TFVVNAQGAVVIWNRAAEEFTGAKAEAMLGKAGNECAIPFYGMRRPLLLDMVLA--PWRA 766

Query: 146 KT-----TLWPIEG------------TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNR 188
           +          +EG            +  +      A P+Y    E         V    
Sbjct: 767 EEIKPLYVRLVVEGGKIIGEGPVKSASRPHAYTMAMAAPLYDSEGEVIAV--IESVRDIT 824

Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA 248
              +     KR       L   +     V KE+ ++ +Q        M +++ +      
Sbjct: 825 ELKEGEDELKRHRAHLEELVRERTMELLVAKERAEVANQAKSAFLSSMSHELRTPLNAIL 884

Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTK----------KQYFGTLQNNSKE 298
               +LK +        ++   + E       +  +           +     L   S +
Sbjct: 885 GYAQILKRQDN----LTDAQRQQLEIVRGCGEHLLSLINDVLDMGKIEAQKMELAELSFD 940

Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF 333
               L      +     ++      E +++ P   
Sbjct: 941 LSALLGQVFSIAKVKADEKDLGFKYEELNRLPRAV 975


>gi|107022927|ref|YP_621254.1| multi-sensor hybrid histidine kinase [Burkholderia cenocepacia AU
           1054]
 gi|116686830|ref|YP_840077.1| multi-sensor hybrid histidine kinase [Burkholderia cenocepacia
           HI2424]
 gi|105893116|gb|ABF76281.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia cenocepacia AU
           1054]
 gi|116652545|gb|ABK13184.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia cenocepacia
           HI2424]
          Length = 768

 Score =  333 bits (853), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 105/560 (18%), Positives = 195/560 (34%), Gaps = 33/560 (5%)

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS---LSAYFDEGENLTP 323
           +        +T  L     +     L      +   L H    +                
Sbjct: 71  TLFLSDPAAYTTPLPDRLVQLGTFILIGALVCAVASLLHHTRLTNDRARRREAAARRQFE 130

Query: 324 ETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
             +   P        +G L Y N +   L   +  + +        L             
Sbjct: 131 AVLRALPHGVIATDPNGRLTYLNAAAAELVGCRPDEAV-GRPVRDVLRIVDHEGRRVPTT 189

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
           P+          +    L     +R   +A+   P   A+   +       +      R+
Sbjct: 190 PLDRALGGAEATSDRHWLQAGSGDRVPIVAVA-SPIGDADGNLDGAVLLLRDAGADRARV 248

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
           +  +++       +++EA+ D I  I+ +G I S N A  ++FGY   D   + F   + 
Sbjct: 249 DASRLQ------HAVVEASPDAIVGIDADGRIASWNAAAQRIFGYDEADARGRRFDTLIA 302

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM---- 558
                +  + L +              L   ++ +     +    +   +   +T+    
Sbjct: 303 --RRWLRLNPLADAFDAMHEPVGPLELLCVRRDGRRFRATVSACPVQGEARACVTLSLTL 360

Query: 559 --------HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
                    D+   +  +      +  A+  +  K + LA VSHE+RTPL  I G+ EV+
Sbjct: 361 HETGAQRRRDLRAQRSLQGARDA-RDQADTSNRLKDELLATVSHELRTPLNVIYGWIEVL 419

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
           +N     L      +  + IDRS   +  +V D+LD S + +GK+ L   PV +    S+
Sbjct: 420 RNTGDHAL----QHQAIDAIDRSARSLTRMVGDILDASSLATGKLRLDATPVDVVRLFSD 475

Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
            +   Q  A+   IL+    A +   +  D   ++Q+  N++SNA+ FTP GG + +   
Sbjct: 476 QVGTFQTAASSAGILLEFDCAASACIVSGDAERLRQMLSNLISNALKFTPGGGSVTVGLA 535

Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
                  +L V DTG G+           F +  +S      G GLGL + + +   + G
Sbjct: 536 -RDGGHAVLTVADTGQGIATEFTPYVFDMFRRADDSPASPRRGLGLGLSIVRHIAQLHGG 594

Query: 791 KFYIFST-PAKGTLIEIIFP 809
              + S    +GT   +  P
Sbjct: 595 NVTVASAGRDRGTTFTVTLP 614



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/254 (12%), Positives = 63/254 (24%), Gaps = 13/254 (5%)

Query: 76  FDPIPRTVRF-TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG 134
           F+ + R +       D +G L  ++    + +G    + +G  + DV  I+  +      
Sbjct: 129 FEAVLRALPHGVIATDPNGRLTYLNAAAAELVGCRPDEAVGRPVRDVLRIVDHEGRRVPT 188

Query: 135 DLLKR--QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192
             L R            W   G+   VPI   A PI   +    G     ++     D  
Sbjct: 189 TPLDRALGGAEATSDRHWLQAGSGDRVPIVAVASPIGDADGNLDGA--VLLLRDAGADRA 246

Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP----PHLRMKNKVSSLTEYYA 248
                +        + E              I S  +       +     +        A
Sbjct: 247 RVDASR----LQHAVVEASPDAIVGIDADGRIASWNAAAQRIFGYDEADARGRRFDTLIA 302

Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
            +   L           E   P +      +  ++        +Q  ++         + 
Sbjct: 303 RRWLRLNPLADAFDAMHEPVGPLELLCVRRDGRRFRATVSACPVQGEARACVTLSLTLHE 362

Query: 309 PSLSAYFDEGENLT 322
                  D     +
Sbjct: 363 TGAQRRRDLRAQRS 376


>gi|311232728|gb|ADP85582.1| signal transduction histidine kinase with CheB and CheR activity
            [Desulfovibrio vulgaris RCH1]
          Length = 1535

 Score =  333 bits (853), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 119/651 (18%), Positives = 217/651 (33%), Gaps = 33/651 (5%)

Query: 185  HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSS 242
             VN          + L + ++ L +      +   E   +    +          + V  
Sbjct: 749  TVNAEFERKNDQLRILGEDYAQLFDTIPIAIASLDESLRVRRFNAGMSAIFHLQPHDVGR 808

Query: 243  LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302
              +  A            L            +    +      +Q    +++ +  +   
Sbjct: 809  PLQQIASCLAEPDNLFKSLALGLSEGGTHDSEARLTDG--RWCQQRIHAVRDETGATEHM 866

Query: 303  LSHRNHPSL---SAYFDEGENLTPETVDKCPIPFF----VYSHG-NLFYANPSFLLLTKY 354
            L      +    +    +      E     P   F     +     + Y     + L   
Sbjct: 867  LLTFMDITHVKHAEAMRQEARSLDEVSRNVPGVVFKLCAPHDGNIRVEYVGGGTVELCGL 926

Query: 355  KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
               +       L  L   P +  +       +  +D         +          + + 
Sbjct: 927  SQEEIKADPHALVALF-GPDVVPHILAG---ISATDGEGTPVDVEIPLHCTGGTKWVHVQ 982

Query: 415  FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII 474
                       E     G+  +  + R +  +M     +   IL+     I   +  G  
Sbjct: 983  ATSTPARGGGTE---WYGVAVDATERRYDATRMHNAADRYLRILDHAPMLIWRSDTTGAC 1039

Query: 475  LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
               N       G  +E      +   +  +          +  +  L+Q  E        
Sbjct: 1040 DWFNTTWLDFTGRTMEQEYGYGWAGGVHPDDYDRCVSIYQKAFA--LQQAFEMNYRLKRH 1097

Query: 535  EEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
            + +   L    K LP        +    +DI++       +  A K AE+ +  KS+FLA
Sbjct: 1098 DGQFRWLVDCGKPLPDLDGTFSGFIGYCYDITDAVNALESMCEASKRAEEANRTKSEFLA 1157

Query: 591  RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650
             VSHE+RTPL   +G    +         +P   +Y     RSG  ++ +++D+LD+S+I
Sbjct: 1158 NVSHELRTPLNGALG----MLQLLELSSLSPEQRQYVTTAIRSGQNLVRLLSDILDLSRI 1213

Query: 651  ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIAL 709
            E+GK+ +   P  + E V E  S   L A  K I + T+ A   P  +  D   ++Q   
Sbjct: 1214 EAGKLVIEAIPCDIRELVDEVFSTFSLDATGKGITLETTIAPGTPTYVRTDPLRLRQTLF 1273

Query: 710  NILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNS 766
            N++ NA+ FT  GG ++  ST     + ++L   VRDTG G+    +E   +PF Q+  S
Sbjct: 1274 NLVGNAVKFTEKGGVRVEFSTASMRGDAIVLFCTVRDTGPGIPEDRIESIFQPFTQLDGS 1333

Query: 767  QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
               R  G GLGL +   +++   G   + S P  GT +    P+  T  P 
Sbjct: 1334 YTRRHSGLGLGLGIVCRLMELFGGSIEVESAPDMGTAMHFAIPVGKTRRPQ 1384



 Score = 47.7 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 26/226 (11%), Positives = 51/226 (22%), Gaps = 11/226 (4%)

Query: 80   PRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI-GDLLK 138
                   W  D  G     +       G    +  G            D    I      
Sbjct: 1024 DHAPMLIWRSDTTGACDWFNTTWLDFTGRTMEQEYGYGWAGGVHPDDYDRCVSIYQKAFA 1083

Query: 139  RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
             Q  +     L   +G   +  +     P+   +  FSGF G+   +      +      
Sbjct: 1084 LQQAFEMNYRLKRHDG--QFRWLVDCGKPLPDLDGTFSGFIGY--CYDITDAVNALESMC 1139

Query: 199  RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
               K+    +  K    +    +         P +  +           + +     T  
Sbjct: 1140 EASKRAEEANRTKSEFLANVSHELRT------PLNGALGMLQLLELSSLSPEQRQYVTTA 1193

Query: 259  YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
                 +    L +  D   I   +   +     ++    E F   S
Sbjct: 1194 IRSGQNLVRLLSDILDLSRIEAGKLVIEAIPCDIRELVDEVFSTFS 1239


>gi|197106701|ref|YP_002132078.1| sensor histidine kinase/response regulator [Phenylobacterium
           zucineum HLK1]
 gi|196480121|gb|ACG79649.1| sensor histidine kinase/response regulator [Phenylobacterium
           zucineum HLK1]
          Length = 554

 Score =  333 bits (853), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 91/366 (24%), Positives = 167/366 (45%), Gaps = 12/366 (3%)

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
              L  IL  +S+GI +++    IL  +      FG+  ++++ +     +     +   
Sbjct: 43  EDVLNGILNISSEGIVVLDARLRILVFSPGAEAAFGWSADEMVGQSIERLIPPALRASHR 102

Query: 511 HYLTEILSLDLRQTL---EKITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWK 565
            ++    + + +           G  +  ++  L + + KL  S    Y+  + D+S+ +
Sbjct: 103 KHVEAFAAGEAQSRRMSDRSDIFGLRRNGEVFPLEVGLSKLMTSKGQIYTALLRDVSDRR 162

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + +  L+ A   A+  +  KS FLA +SHEIRTPL  ++G ++ +  +   P       E
Sbjct: 163 EAEQALALAAAEAQAANQAKSAFLAAMSHEIRTPLNGVLGMAQAMAMEDLPP----HQRE 218

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
               I +SG  +L I+NDLLD+SKIE+GK+ L      + E    A +     A  + + 
Sbjct: 219 RLEVIRQSGESLLAILNDLLDLSKIEAGKLELEDAEFDIQELARGAHATFVAVAEARGLA 278

Query: 686 IRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744
              + A     +   D   V+QI  N++SNA+ FT +G  + ++   +    + L V+DT
Sbjct: 279 FEVAVAPAARGVYRGDPLRVRQILHNLISNALKFTEAGS-VRVTVGRS-GGALSLVVQDT 336

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G+   +  +  + F Q   S   R  GTGLGL + + +     G   + S P +G   
Sbjct: 337 GIGIPPEKAARLFQKFEQADASTTRRFGGTGLGLAICRDLAQMMGGSIGVESAPGEGATF 396

Query: 805 EIIFPL 810
            ++ PL
Sbjct: 397 TVLLPL 402



 Score = 41.9 bits (97), Expect = 0.45,   Method: Composition-based stats.
 Identities = 41/459 (8%), Positives = 101/459 (22%), Gaps = 35/459 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK------RQNT 142
           +DA   +   S       G  A +M+G  +  +        +    +         R+ +
Sbjct: 60  LDARLRILVFSPGAEAAFGWSADEMVGQSIERLIPPALRASHRKHVEAFAAGEAQSRRMS 119

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
                      G    + + L+ L          G     ++       +          
Sbjct: 120 DRSDIFGLRRNGEVFPLEVGLSKLMTS------KGQIYTALLRDVSDRREAEQALALAAA 173

Query: 203 KFSHLHEIKKGHSSVEKEKYD-----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257
           +    ++ K    +    +       +           +        E      + L   
Sbjct: 174 EAQAANQAKSAFLAAMSHEIRTPLNGVLGMAQAMAMEDLPPHQRERLEVIRQSGESLLAI 233

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
              LL   +    + E        Q   +    T    ++           P+    +  
Sbjct: 234 LNDLLDLSKIEAGKLELEDAEFDIQELARGAHATFVAVAEARGLAFEVAVAPAARGVYRG 293

Query: 318 GENLTPETVDKC-PIPFFVYSHG--NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
                 + +             G   +        L    +           + L    +
Sbjct: 294 DPLRVRQILHNLISNALKFTEAGSVRVTVGRSGGALSLVVQDTGIGIPPEKAARLFQKFE 353

Query: 375 LSDNNAIKP-----VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
            +D +  +      + L             +       E +     +P ++  + P    
Sbjct: 354 QADASTTRRFGGTGLGLAICRDLAQMMGGSIGVESAPGEGATFTVLLPLKRIARAPAPPT 413

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQ---LCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
                P   +T +     E   +    L ++LE      A +  +G       A    + 
Sbjct: 414 AAPPPPTPRETALKVLVAEDNAVNQVVLKTLLEQLGVA-ATVAPDGR------AAVAAWE 466

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
               D++     +       +       E      R  +
Sbjct: 467 REPWDVILMDVQMPEMDGPTATGVIRRREAAEGRPRTPI 505


>gi|317152269|ref|YP_004120317.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316942520|gb|ADU61571.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 922

 Score =  333 bits (853), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 106/534 (19%), Positives = 205/534 (38%), Gaps = 27/534 (5%)

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKC----PIPFFVYSHGNLFYAN-PSFLLLT 352
            + E        +   +     N  P  +       P     Y    L+  + P   +  
Sbjct: 252 PASEATPLGAPIAQEVFLAASRNDGPGIMHSMGSDGPRRIVAYESIRLWSGSEPYMYMFM 311

Query: 353 KYKSVDDIEIAGGLSTLL-DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411
            ++  + +  A   + L      +S   A+             +            E+  
Sbjct: 312 GFQEAELLRQANIQAVLGGVTIAVSLALALLLAWYAGGRPLARSLEKLTKAACNVGESGR 371

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR-----KMEIEVMQLCSILEATSDGIA 466
                      +  +           ++ R  +R     ++     Q   +LE+   GI 
Sbjct: 372 MTPSNLDYSDGEMGQLGKAFDTMGHLLEEREAERNVALVRLSESEEQYRILLESNPAGIC 431

Query: 467 IINRE-GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
           +++ E   I   N A  +L G   ED+     +          ++          +  + 
Sbjct: 432 LVDPETMAIEFANPAFLRLLGLGPEDVGAIRVSDIHPPEDLEAISESFMRHSRQGVSFSA 491

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
               L    E  L+ +     ++      +    DI+E K+ ++ L  AK+ AE+ +  K
Sbjct: 492 AIPCLTRGGERILVDISSARVRIYGRVLLAGFFTDITERKRYEDALVVAKEAAEQANRAK 551

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
            +FLA +SHE+RTPL  ++G  ++I+        +   +   +   +S   +L ++ND+L
Sbjct: 552 DEFLANISHEVRTPLNGVMGMLQLIR----VSATSGEQLANVDIAIQSSRNLLRVLNDVL 607

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSV 704
           D SKIE+GK++L+ EP  L   + + +SL +  A+EK +++ +    +       D   +
Sbjct: 608 DFSKIEAGKLDLYNEPFDLAGLMRQCVSLFKQQADEKGLVLDSRIDPSARECYLGDEGRI 667

Query: 705 KQIALNILSNAIHFTPSGGQIIIS---TTHTSNE--EVILRVRDTGVGMTNYELEKAMKP 759
           +Q+  N+L NAI FT  G  I +      H       +   V DTGVG+ + +++     
Sbjct: 668 RQVLFNLLGNAIKFTMYGS-ITLEAYALAHPEPGCERLFFSVTDTGVGIPDSKVDYIFDS 726

Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL----IEIIFP 809
           F Q+ +S   + +G GLGLP+ K ++    G   + S    GT     +++  P
Sbjct: 727 FTQVDSSLSRKYKGVGLGLPIVKRLIRLLGGTLVVDSEMGAGTTILFNVQVRIP 780


>gi|188579941|ref|YP_001923386.1| multi-sensor signal transduction histidine kinase [Methylobacterium
           populi BJ001]
 gi|179343439|gb|ACB78851.1| multi-sensor signal transduction histidine kinase [Methylobacterium
           populi BJ001]
          Length = 643

 Score =  333 bits (853), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 113/581 (19%), Positives = 210/581 (36%), Gaps = 18/581 (3%)

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
           V       A   D             E  +  + +         ++      +       
Sbjct: 3   VLRKDGALASLFDSRLAGLVHASALAEPGVRFRHER-----FLISRLATGAVMMAGLPPY 57

Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDD 359
             +    +     A       L    +       ++    +        + L        
Sbjct: 58  LVWRGVPSGIEALAIASLFLPLVAAVILSRTGSLWIAHALSSLGLTGIVVCLAALTGGAS 117

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
              A  L  +     +S +          +     A +  L         +LA       
Sbjct: 118 SAAAIWLVAVPLEAMISGSRRATIAASVIA--VLGAFAVALSGYLPVGSLALAWPNAVVM 175

Query: 420 KANQFPENMPQNGIEPEDVDTRIN-KRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
                           E +      + +M+    +   +L A  D +   +  G +L  +
Sbjct: 176 PVFAVTAIGHIAAQAMEHMRREGEWRARMQDNEARDRLLLSAIDDLVTWHDANGRVLEAS 235

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG---STKE 535
            + ++  G     +        +       +   ++++ +  +  T+             
Sbjct: 236 GSAARFVGAEASRLRGHGLLDRVHIGDRPALLQAISDVAAHGMPATVPFRLHLDAPRADG 295

Query: 536 EKLLSLRIIIKKLP------FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
            + +   +   ++         S       D+SE ++   +L  A+  AE+    K+ FL
Sbjct: 296 SRTIYAEMRAHRIEAGLAGANGSTVVAVTRDVSEHRRHAQELDRARAEAERADEVKTHFL 355

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
           A VSHE+RTPL AIIGFS+V+  +    L   R  EYA  I +SG  +LD+VN LLDIS+
Sbjct: 356 ATVSHELRTPLNAIIGFSDVLSGEGAVSLSPERSREYAGIIAQSGRHLLDVVNTLLDISR 415

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709
           I  G  +   EPV ++  +     L++L A+   I + ++       ++AD R+ +Q+ +
Sbjct: 416 IRGGHFDFQPEPVDVEALIRSCCDLMRLKADASGIALVSAPVPAGCALVADARACRQMLI 475

Query: 710 NILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
           N++SNA+ FTP GG++ +         + + V D G+G+T  +L +   PF Q       
Sbjct: 476 NLISNAVKFTPRGGRVEVMVR-RGGAYLDVVVSDNGIGITEADLPRLGDPFFQAGGGYGR 534

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             EGTGLGL + + +   + G   + S P KGT + +  PL
Sbjct: 535 SHEGTGLGLSVVRGLAGLHGGAVSVESAPGKGTAVTVTLPL 575



 Score = 41.6 bits (96), Expect = 0.58,   Method: Composition-based stats.
 Identities = 28/273 (10%), Positives = 63/273 (23%), Gaps = 16/273 (5%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           DA+G + E S    + +G  A ++ G  L D   I            +            
Sbjct: 226 DANGRVLEASGSAARFVGAEASRLRGHGLLDRVHIGDRPALLQAISDVAAHGMPATVPFR 285

Query: 150 WPIEGTNLYVPIDLAA--LPIYSRNREFSGFRG---FGIVHVNRVDNDPRALGKRLDKKF 204
             ++         + A            +G  G     +               R   + 
Sbjct: 286 LHLDAPRADGSRTIYAEMRAHRIEAG-LAGANGSTVVAVTRDVSEHRRHAQELDRARAEA 344

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQ-SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
               E+K    +    +             +       SL+   + +   +  +    L 
Sbjct: 345 ERADEVKTHFLATVSHELRTPLNAIIGFSDVLSGEGAVSLSPERSREYAGIIAQSGRHLL 404

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNN--------SKESFEYLSHRNHPSLSAYF 315
              ++L +       + +   +      L  +        +  S   L     P+  A  
Sbjct: 405 DVVNTLLDISRIRGGHFDFQPEPVDVEALIRSCCDLMRLKADASGIALVSAPVPAGCALV 464

Query: 316 DEGENLTPETVDKCPIPF-FVYSHGNLFYANPS 347
            +        ++       F    G +      
Sbjct: 465 ADARACRQMLINLISNAVKFTPRGGRVEVMVRR 497


>gi|67639970|ref|ZP_00438795.1| sensory box histidine kinase/response regulator [Burkholderia
           mallei GB8 horse 4]
 gi|238520599|gb|EEP84057.1| sensory box histidine kinase/response regulator [Burkholderia
           mallei GB8 horse 4]
          Length = 757

 Score =  333 bits (853), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 104/519 (20%), Positives = 181/519 (34%), Gaps = 27/519 (5%)

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEI 362
           S R + +L        +     +        V   HG L Y NPS   L        +  
Sbjct: 97  SRRANDALRRREAGARHYYETLLQSLTQGVVVSDRHGMLTYMNPSAAALIGC-DATAVRG 155

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
                                +          +       +  +    + +        +
Sbjct: 156 LPFRDVYRAYDGRGARVRASALEHVLRSGRSASVEGH--WLAPHDGQRVPIAEAASPLVD 213

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
              +      I  +    R      ++    L  ++EA+ D I  +     I S N A  
Sbjct: 214 SAGDMTGAVLIVRDISIERERSAASQM----LRRLVEASPDAIVGVGSNRRITSWNPAAR 269

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
           ++FGY           + +           L E +            L   ++   +   
Sbjct: 270 RMFGYDEHAARGCDVAMLIAPRWLRNHP--LPESVPDMREPIENVDVLCVRQDGGRMRAT 327

Query: 543 IIIKKLPFSSCYSL----TMHDISEWKQEKNK-------LSHAKKIAEKESSHKSDFLAR 591
           +    +       +    T+ D  E ++ + +          A++ A+  +  K + LA 
Sbjct: 328 MSASPVFDERDACIALSLTLRDTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLAT 387

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           VSHE+RTPL  I G+ EV++N   G L      +  + IDRS   +  +V D+LD S + 
Sbjct: 388 VSHELRTPLNVIYGWIEVLRNPVDGAL----QQQAIDAIDRSARSLSRMVGDILDASSLA 443

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
           +GK+ L   PV L   V++    +   A    I +    A     +  D   ++Q+  N+
Sbjct: 444 TGKLRLDAMPVDLVRIVNDVTGALGAAAQADGIALSVECALATCIVSGDGERLRQMLSNL 503

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           LSNA  FTP GG++ +S       +  L V DTG G++   L    + F +   +     
Sbjct: 504 LSNAFKFTPRGGRVTVSLERHD-AQAKLTVADTGHGISPEFLPHVFEAFRRAEGAPASPR 562

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFP 809
            G GLGL + + + + + GK    S    +GT   I  P
Sbjct: 563 RGLGLGLSIVRHIAELHGGKVEAASAGKNRGTTFAITLP 601



 Score = 65.0 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/225 (12%), Positives = 54/225 (24%), Gaps = 5/225 (2%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK---RQNTWYGK 146
           D HG L  ++      IG  A  + G+   DV               L+   R       
Sbjct: 130 DRHGMLTYMNPSAAALIGCDATAVRGLPFRDVYRAYDGRGARVRASALEHVLRSGRSASV 189

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
              W        VPI  AA P+     + +G     IV    ++ +  A  + L +    
Sbjct: 190 EGHWLAPHDGQRVPIAEAASPLVDSAGDMTGA--VLIVRDISIERERSAASQMLRRLVEA 247

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
             +   G  S  +      + +    +     +   +    A +          +    E
Sbjct: 248 SPDAIVGVGSNRRITSWNPAARRMFGYDEHAARGCDVAMLIAPRWLRNHPLPESVPDMRE 307

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
                       +  +         + +                 
Sbjct: 308 PIENVDVLCVRQDGGRMRATMSASPVFDERDACIALSLTLRDTGE 352


>gi|283850599|ref|ZP_06367886.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           sp. FW1012B]
 gi|283573842|gb|EFC21815.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           sp. FW1012B]
          Length = 577

 Score =  333 bits (853), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 110/585 (18%), Positives = 214/585 (36%), Gaps = 63/585 (10%)

Query: 278 INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS 337
                                    +S   +P L    +E E      +D+     F+  
Sbjct: 5   AKAPAGPGPDRDDRRARLLGFGEHSVSKSYYPELKRRLEELER-FRSLLDQTGEAIFLVD 63

Query: 338 H--GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIA 395
              G +  A  +   + +      +         L    L          L+  D     
Sbjct: 64  GRTGRITDAAGAAGTMLRQDRQALVGR-------LFEELLPQEAVDHLRGLFSGDFAAGR 116

Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
               L         S ++            E      +  +  + + N++ ++    +  
Sbjct: 117 IETVLGRPGVRGGVSPSVEVTFRL--ASGEEGPIAIIVARDVTERKKNEQALKRAEEKYR 174

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
            I+E  ++GI   + +G ++S N A++ L GY     L +     ++Q      +     
Sbjct: 175 GIVENAAEGIFQSSLDGRLISANPAMASLLGYASTRELMRRIKNVVDQIVTHPEDRQRIR 234

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKL 571
                  Q        +TK    +   I  +++  ++     +  ++ D++  K+ +  L
Sbjct: 235 SELTRYDQVKNLEVQMTTKTGNTIWGLINARRIRDAAGEPERFDGSLQDVTVRKKAEQTL 294

Query: 572 SHAKKIAEKESSHK--------------------------------SDFLARVSHEIRTP 599
                  E   + +                                SDFL+ VSHEIRTP
Sbjct: 295 LRYHDELETRVAERTAELTRINERLTHEVTIRKRAEEAAEAANRAKSDFLSMVSHEIRTP 354

Query: 600 LTAIIGFSEVIKNQ------------RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           LT+++GF+ +I+ +                    + +E    I   G  +  ++ND+LD+
Sbjct: 355 LTSVLGFAVIIEKRLEQLFLPLLDRDPRRRRQAEQVMENLGIIVSEGERLKHLINDVLDL 414

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAI-SLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706
           +K+E+GKM    E V   E V   + + V L ++ K++ + T     +P +L D   + Q
Sbjct: 415 AKLEAGKMAFKQERVDPAEVVRHVMSASVGLLSSHKKVSLDTRIEGRLPEVLGDRDRLIQ 474

Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
           + +N++SNA+ FT  G  +      T    +++ V DTG+G+   E  K  + F QI  +
Sbjct: 475 VLVNLVSNALKFTERGS-VTCR-ARTEGHYIVVDVTDTGIGIPESEQHKVFEKFNQIGAT 532

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
              + +GTGLGL + K +V+++ G+ +  S P  G+      P+ 
Sbjct: 533 LTNKPKGTGLGLAICKHIVESHGGRIFYVSKPGSGSTFTFTLPIA 577



 Score = 45.4 bits (106), Expect = 0.044,   Method: Composition-based stats.
 Identities = 19/139 (13%), Positives = 45/139 (32%), Gaps = 8/139 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            +     G L   +  +   +G  + + +  R+ +V D +   P +     ++ + T Y 
Sbjct: 184 IFQSSLDGRLISANPAMASLLGYASTRELMRRIKNVVDQIVTHPEDR--QRIRSELTRYD 241

Query: 146 KTTLWPIE---GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR-LD 201
           +     ++    T   +   + A  I     E   F G   +    V         R  D
Sbjct: 242 QVKNLEVQMTTKTGNTIWGLINARRIRDAAGEPERFDG--SLQDVTVRKKAEQTLLRYHD 299

Query: 202 KKFSHLHEIKKGHSSVEKE 220
           +  + + E     + + + 
Sbjct: 300 ELETRVAERTAELTRINER 318



 Score = 41.6 bits (96), Expect = 0.58,   Method: Composition-based stats.
 Identities = 17/247 (6%), Positives = 59/247 (23%), Gaps = 15/247 (6%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTT 148
              G + + +      +      ++G    ++     +D                     
Sbjct: 64  GRTGRITDAAGAAGTMLRQDRQALVGRLFEELLPQEAVDHLRGLFSGDFAAGRIETVLGR 123

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                G +  V +          + E  G     +              KR ++K+  + 
Sbjct: 124 PGVRGGVSPSVEVTFRLA-----SGE-EGPIAIIVARDVTERKKNEQALKRAEEKYRGIV 177

Query: 209 EIKKGHSSVEKEKYDIFSQQSP-------PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
           E              + S                +  ++ ++ +      +  +  +  L
Sbjct: 178 ENAAEGIFQSSLDGRLISANPAMASLLGYASTRELMRRIKNVVDQIVTHPEDRQRIRSEL 237

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
              ++    E +   T   N          +++ + E   +       ++    ++    
Sbjct: 238 TRYDQVKNLEVQMT-TKTGNTIWGLINARRIRDAAGEPERFDGSLQDVTVRKKAEQTLLR 296

Query: 322 TPETVDK 328
             + ++ 
Sbjct: 297 YHDELET 303


>gi|260597946|ref|YP_003210517.1| hypothetical protein CTU_21540 [Cronobacter turicensis z3032]
 gi|260217123|emb|CBA30915.1| hypothetical protein CTU_21540 [Cronobacter turicensis z3032]
          Length = 877

 Score =  333 bits (853), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 101/500 (20%), Positives = 185/500 (37%), Gaps = 38/500 (7%)

Query: 333 FFVYSHGNLFYANPSFLL--------LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
            F      L   N             L    ++  + +    +      +  D      +
Sbjct: 1   MFYDKDERLVAWNAQVSRFYPGIGPHLVPGAALSALAVEFINTGFQTDSRSRDTLIASLL 60

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
              R D  C         +    + +                +     +  +       +
Sbjct: 61  ANCRHDGHCEVRQLHERRLFIQHQRT---------------ADGGIISLHTDITALDTVQ 105

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR--KPFTVFLE 502
              ++         E+   GI        +L  N A   L G P   +    +     + 
Sbjct: 106 STRQLLHDDFLLAAESIHIGIWDWQVTTDVLHLNDAFLNLLGEPRGQLQHTSRFLLSLIH 165

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR-----IIIKKLPFSSCYSLT 557
                ++ + +       +    E       +  K L +      I +           T
Sbjct: 166 PEDRDLLKNAMQRASEHQMP-VFECEIRVQHRSGKWLWMLLSGQIIALTVTGEIERLIGT 224

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
           + DI+  K+ +     A   A   +  KS FLA +SHEIRTP+  I+G +++  +     
Sbjct: 225 LQDITRRKEAELISRDAANAARAANEAKSAFLANMSHEIRTPMNGILGMTQLCLDTEL-- 282

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
             N    EY + +  S   +L I++D+LD SKIE+GK+ LH E V+L   +   +  +  
Sbjct: 283 --NGEQREYLSLVMSSAQSLLHIIDDILDFSKIEAGKIVLHEEYVALRPFIQSLVRPLMP 340

Query: 678 YANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTT-HTSNE 735
            A+EK+I +       +P ++  D+  ++Q+  N+LSNA+ FTP G +I+++      + 
Sbjct: 341 LASEKQIELLVEVDERVPEMMRVDVVRLRQVLTNLLSNALKFTPQG-EILLAVAPAAQDG 399

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
           E   RVRD+G+G+   + +   + F Q   S   R  GTGLGL ++  +V    G+  + 
Sbjct: 400 EWRFRVRDSGIGIPPEKQQVIFEAFSQADTSTTRRYGGTGLGLTISARLVAMMGGQLTVA 459

Query: 796 STPAKGTLIEIIFPLYDTSH 815
           S   +G+      PL+    
Sbjct: 460 SEANQGSEFSFTLPLHSAEQ 479


>gi|319793726|ref|YP_004155366.1| signal transduction histidine kinase with cheb and cher activity
            [Variovorax paradoxus EPS]
 gi|315596189|gb|ADU37255.1| signal transduction histidine kinase with CheB and CheR activity
            [Variovorax paradoxus EPS]
          Length = 1556

 Score =  332 bits (852), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 100/624 (16%), Positives = 210/624 (33%), Gaps = 44/624 (7%)

Query: 209  EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
            +              IF   +      + + V+ L       D               S 
Sbjct: 802  DRNLRVMRFTPSAATIFKLIASDTGRPLSDLVTGLDYPELSDDAR---------AVLRSL 852

Query: 269  LPEQEDFHTINLNQYTKKQYFGTLQNN--SKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
             P + +      N Y  +        +  +     ++             + +      V
Sbjct: 853  QPSEREVGDARGNWYLARARPYRTIEDVIAGVVLSFVDITERKVAQESLRQSQERFSAIV 912

Query: 327  DKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
            ++  +        G + +AN  +  LT Y   + +     L  +  A   +  +  + + 
Sbjct: 913  NQASVGVAQMRLDGEITFANTCYRALTGYGDDELLGRR-VLDFVHPADLPATQSLFEQLA 971

Query: 386  LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
                        A    ++ N E  + +        +          +  +  + ++ + 
Sbjct: 972  AQGK-----PFQAENRIVRKNGE-VMWLHKSVTVLTDGGGRPDSALIVCTDVSERKLAEE 1025

Query: 446  KMEIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
             +     ++  +LE   +  I  ++ E  + S N    +L GY  ++IL +   +   + 
Sbjct: 1026 ALRESQERMRLMLENAIEYAIFSVDMERRVTSWNAGAERLLGYSEQEILGRSADLIFTEE 1085

Query: 505  TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHD 560
              +     + E  +           L   K+         +  +             + D
Sbjct: 1086 DRAAG-APVEEARTALAEGRAADDRLHQRKDGSRFWASGALMPMHDGEGRSIGLVKVLRD 1144

Query: 561  ISEWKQEKNKLSHAK--------------KIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
             S+ +  + +L  ++              +  E   + K  FLA +SHE+R PL +I G 
Sbjct: 1145 QSKQRAAQQELEQSRGELLSALRANEAARRALETADAAKDRFLAVLSHELRNPLASISGA 1204

Query: 607  SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
            +E++  +    L        A  I R  +++  ++ +LLD+S +  G++ L  E +S   
Sbjct: 1205 AELLAPE---SLATQDQARAARVIRRQASVMKVMLGELLDVSSLRQGRLALSRERISAQA 1261

Query: 667  AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726
                A+  V+      R  +    A     + AD   + Q+  N+LSNA  +TP+ G+I 
Sbjct: 1262 IADAALETVRPLIEHGRHTLDLDIAEEEIALDADPIRLSQVLSNLLSNAAKYTPAPGRIA 1321

Query: 727  ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
            +S    + + V   V D G+GM    +E   + F Q  ++      G G+GL L + +V+
Sbjct: 1322 LSVRAEARDAV-FEVTDDGIGMEPESIETMFEMFVQSEHAHARANGGLGIGLALVRNIVE 1380

Query: 787  ANMGKFYIFST-PAKGTLIEIIFP 809
             + G     S    +G    +  P
Sbjct: 1381 LHGGTVTGHSEGLGRGCRFTVRIP 1404



 Score =  131 bits (329), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 67/500 (13%), Positives = 142/500 (28%), Gaps = 43/500 (8%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            +DA   +  IS      +     +     +  +   L  +    +    +R         
Sbjct: 578  VDAGHEMLHISPAATAFLYFGGGEPSRNVMQAIVPDLKAELQTALHHAHERHEPVEVAPV 637

Query: 149  LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               I G    V + ++  P+      F G  GF +            L +R D +   L 
Sbjct: 638  RARIAGG--EVEVTVSVRPV----EAFGG--GFLV------------LLRRQDLRQDALE 677

Query: 209  EIKKGHSSVEKEKYDIFSQQSPPPHLR-MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
                  +    + + +  +  P P    ++ +V  L        +  +     L  S E 
Sbjct: 678  GNSGETAPAAGDAFAVLPRMKPEPIASHLEREVGRLKARLRQTVEQYEVSTEELKASNEE 737

Query: 268  SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
                 E+ H       T ++   ++        + L ++      A  D    +    + 
Sbjct: 738  LHAMNEELHAAAEELDTSREELQSINEELTTVNQELKNKVDDLGHANSDIVNLMDATAI- 796

Query: 328  KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
                  F+  +  +    PS   + K  + D       L T LD P+LSD+       L 
Sbjct: 797  ---ATVFLDRNLRVMRFTPSAATIFKLIASDTGRPLSDLVTGLDYPELSDDARAVLRSLQ 853

Query: 388  RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
             S+R                                            +  + ++ +  +
Sbjct: 854  PSEREVG------------DARGNWYLARARPYRTIEDVIAGVVLSFVDITERKVAQESL 901

Query: 448  EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
                 +  +I+   S G+A +  +G I   N     L GY  +++L +    F+      
Sbjct: 902  RQSQERFSAIVNQASVGVAQMRLDGEITFANTCYRALTGYGDDELLGRRVLDFVHPADLP 961

Query: 508  VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SLTMHDISE 563
                   ++ +       +       K  +++ L   +  L           +   D+SE
Sbjct: 962  ATQSLFEQLAAQGKP--FQAENRIVRKNGEVMWLHKSVTVLTDGGGRPDSALIVCTDVSE 1019

Query: 564  WKQEKNKLSHAKKIAEKESS 583
             K  +  L  +++       
Sbjct: 1020 RKLAEEALRESQERMRLMLE 1039



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/387 (8%), Positives = 100/387 (25%), Gaps = 22/387 (5%)

Query: 92   HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR-QNTWYGKTTLW 150
             G +   +       G    +++G R+ D      +     + + L      +  +  + 
Sbjct: 925  DGEITFANTCYRALTGYGDDELLGRRVLDFVHPADLPATQSLFEQLAAQGKPFQAENRIV 984

Query: 151  PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
               G    + +  +   +              +              +   ++   + E 
Sbjct: 985  RKNGE--VMWLHKSVTVLTDGGGRPD--SALIVCTDVSERKLAEEALRESQERMRLMLEN 1040

Query: 211  KKGHS----SVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL--KTEKYPLLTS 264
               ++     +E+      +          +  +    +    ++D       +      
Sbjct: 1041 AIEYAIFSVDMERRVTSWNAGAERLLGYSEQEILGRSADLIFTEEDRAAGAPVEEARTAL 1100

Query: 265  EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL-SHRNHPSLSAYFDEGENLTP 323
             E    +       + +++        + +    S   +   R+     A   E E    
Sbjct: 1101 AEGRAADDRLHQRKDGSRFWASGALMPMHDGEGRSIGLVKVLRDQSKQRAAQQELEQSRG 1160

Query: 324  ETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
            E +                  A   FL +  ++  + +    G + LL    L+  +  +
Sbjct: 1161 ELLSALRANEAARRALETADAAKDRFLAVLSHELRNPLASISGAAELLAPESLATQDQAR 1220

Query: 383  PVMLYRSD--------RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
               + R             +   + L   +              + A +    + ++G  
Sbjct: 1221 AARVIRRQASVMKVMLGELLDV-SSLRQGRLALSRERISAQAIADAALETVRPLIEHGRH 1279

Query: 435  PEDVDTRINKRKMEIEVMQLCSILEAT 461
              D+D    +  ++ + ++L  +L   
Sbjct: 1280 TLDLDIAEEEIALDADPIRLSQVLSNL 1306



 Score = 65.4 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/314 (10%), Positives = 79/314 (25%), Gaps = 23/314 (7%)

Query: 86   TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
             +++D    +   +    + +G    +++G     +           + +          
Sbjct: 1046 IFSVDMERRVTSWNAGAERLLGYSEQEILGRSADLIFTEEDRAAGAPVEEARTALAEGRA 1105

Query: 146  KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
                              A +P++         R  G+V V R  +  RA  + L++   
Sbjct: 1106 ADDRLHQRKDGSRFWASGALMPMHDGEG-----RSIGLVKVLRDQSKQRAAQQELEQSRG 1160

Query: 206  HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
             L    + + +  +                 K++  ++  +         +    LL  E
Sbjct: 1161 ELLSALRANEAARRAL---------ETADAAKDRFLAVLSHELRNPLASISGAAELLAPE 1211

Query: 266  ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
              SL  Q+      + +         L      S                    +   ET
Sbjct: 1212 --SLATQDQARAARVIRRQASVMKVMLGELLDVSSLRQGRLALSRERISAQAIADAALET 1269

Query: 326  VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
            V        +    +    + +   +      D I ++  LS LL           +  +
Sbjct: 1270 VRPL-----IEHGRHTLDLDIAEEEI--ALDADPIRLSQVLSNLLSNAAKYTPAPGRIAL 1322

Query: 386  LYRSDRTCIAASAR 399
              R++         
Sbjct: 1323 SVRAEARDAVFEVT 1336



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 47/437 (10%), Positives = 119/437 (27%), Gaps = 28/437 (6%)

Query: 179 RGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP-PPHLRMK 237
           R F +                       +   +   +   +    + +   P  P   + 
Sbjct: 491 RLFAVADKPHRIYLRCQSRAGAPVPPRPVGPPRAAAARHSQAVIPLAAIAPPVAPQAMLP 550

Query: 238 NKVSSLTEYYAHKDDVLKTEKYP---LLTSEESSLPEQED------FHTINLNQYTKKQY 288
                 T  +A     L     P   L+ +    L           F     ++   +  
Sbjct: 551 TLRGGQTMTWAEMHLQLVDLLAPPSILVDAGHEMLHISPAATAFLYFGGGEPSRNVMQAI 610

Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSF 348
              L+   + +  +   R+ P   A            V     P   +  G L       
Sbjct: 611 VPDLKAELQTALHHAHERHEPVEVAPVRARIAGGEVEVTVSVRPVEAFGGGFLVLLRRQD 670

Query: 349 LLLTKYK--SVDDIEIAGGLSTLLDA--PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
           L     +  S +    AG    +L    P+   ++  + V   ++          + T +
Sbjct: 671 LRQDALEGNSGETAPAAGDAFAVLPRMKPEPIASHLEREVGRLKARLRQTVEQYEVSTEE 730

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC-------SI 457
               N           A     +  +  ++  + +     ++++ +V  L        ++
Sbjct: 731 LKASNEELHAMNEELHAAAEELDTSREELQSINEELTTVNQELKNKVDDLGHANSDIVNL 790

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
           ++AT+     ++R   ++    + + +F     D   +P +  +       ++     +L
Sbjct: 791 MDATAIATVFLDRNLRVMRFTPSAATIFKLIASD-TGRPLSDLVTGLDYPELSDDARAVL 849

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAK 575
                                   R    +      +   L+  DI+E K  +  L  ++
Sbjct: 850 RSLQPS----EREVGDARGNWYLARARPYRTIEDVIAGVVLSFVDITERKVAQESLRQSQ 905

Query: 576 KIAEKESSHKSDFLARV 592
           +      +  S  +A++
Sbjct: 906 ERFSAIVNQASVGVAQM 922


>gi|115373149|ref|ZP_01460451.1| signal transduction histidine kinase (sthk) with cheb and cher
            activity [Stigmatella aurantiaca DW4/3-1]
 gi|115369905|gb|EAU68838.1| signal transduction histidine kinase (sthk) with cheb and cher
            activity [Stigmatella aurantiaca DW4/3-1]
          Length = 1386

 Score =  332 bits (852), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 113/607 (18%), Positives = 224/607 (36%), Gaps = 33/607 (5%)

Query: 216  SVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDF 275
                E       +       MK ++++  +Y     +        L ++ E  +   E+ 
Sbjct: 631  PFRSETASPAKARDAVGVTAMKRELAATRDYLQSLLEEHGRTNDALASTNEELVSGNEEL 690

Query: 276  HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV 335
             ++N    T K+   +         + L  RN        +         +D   IP  +
Sbjct: 691  QSLNEELETAKEELQSTNEELTTVNDELHSRNQ-----ELNLANGDLVNLLDTVDIPVII 745

Query: 336  YSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394
                  +    P    +      D       ++  +  P L    A              
Sbjct: 746  LDLERRIRRFTPKARSIMNVLPSDVGRPLEDITLNVSVPDLGAQVAEVMKT--------- 796

Query: 395  AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
               AR+   +                               +    +    ++E      
Sbjct: 797  ---ARVREFEVQNWTGHWFRMHLRPYKTPENRIDGAILSLVDIDALKHQVSQVEWARDDA 853

Query: 455  CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ-NTPSVMNHYL 513
              I+EA    + +++    +LS N+A  + +     + + K              +   L
Sbjct: 854  TGIVEAVQVPLVVLDGRMRLLSANKAFYQAYPASAAETVAKSLFELSGGAWDVPELRAAL 913

Query: 514  TEILSLDL-RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT-MHDISEWKQEKNKL 571
             ++L+ +   + LE   + +   ++ +SL              L  + DI+E KQ + + 
Sbjct: 914  GQMLAKNTFLEGLELEHVFAHVGKRRMSLSARSVHSRTGLPMLLLAIEDITERKQRELER 973

Query: 572  -------SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
                     AK+ AE+ +  K  FLA +SHE+RTPL+ ++  +++++    G + + +  
Sbjct: 974  AELLAHAQQAKEEAERANRAKDQFLATLSHELRTPLSTMLMQAQLLRR---GTMDDAKIK 1030

Query: 625  EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
              +  I+RS  + + +++DLLD+S+I +GK+ + F+ V L   V  A+  V   A  K I
Sbjct: 1031 RASEAIERSTKMQVQLIDDLLDVSRIVTGKLRMEFQTVHLPGVVQAALESVSAQAERKSI 1090

Query: 685  LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744
            L  T+   ++  +  D   ++QI  N+L+NAI F+  G ++ +           L+V D 
Sbjct: 1091 LFETTLDESLGPVSGDPTRLQQIVWNLLANAIKFSAEGQRVSVVLE-RMEGSARLQVSDR 1149

Query: 745  GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTL 803
            G G+    L++    F Q  +S      G GLGL + + +V+ + G     S    +G +
Sbjct: 1150 GAGIEAEALQRIFDRFMQEDSSSTRVFGGLGLGLAIVRHLVELHGGTVQAESPGKGQGAI 1209

Query: 804  IEIIFPL 810
              +I PL
Sbjct: 1210 FTVILPL 1216


>gi|282897084|ref|ZP_06305086.1| Multi-sensor Signal Transduction Histidine Kinase [Raphidiopsis
           brookii D9]
 gi|281197736|gb|EFA72630.1| Multi-sensor Signal Transduction Histidine Kinase [Raphidiopsis
           brookii D9]
          Length = 638

 Score =  332 bits (852), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 90/413 (21%), Positives = 182/413 (44%), Gaps = 30/413 (7%)

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINK--RKMEIEVMQLCSILEATSDGIAIINREGI 473
           I      +  E +       E ++    +   ++  E  +L +++   +DG  +I+    
Sbjct: 236 IDLPLGGELGELIFSFNDMAERLERYEEQNIEELTAEKAKLETLVSTIADGAVLIDNNMQ 295

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
           ++  N    ++F +   D++ +    +L  +    +   L E+ S   R++ E       
Sbjct: 296 VILVNPTARRIFAWEGTDVVGQNLLNYLPHSVQMEITRTLYEMAS-GERESAEFRIPLRE 354

Query: 534 KEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
             ++ + + +              ++T+ DI+                 + +  KS F++
Sbjct: 355 PTKRTIRILLTTVLDSQRESIKGIAITVQDITR--------------EVELNEAKSQFIS 400

Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650
            +SHE+RTPL  I  + E + +     LG     E+   ++   + +  +VND+LD+SK+
Sbjct: 401 NISHELRTPLFNIKTYIETLHD-YGDDLGAKERQEFLATVNHETDRLTRLVNDVLDLSKL 459

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710
           ESG+   HF+ V L +A+ + +   QL A EK I +    A+N+P ++ +   + Q+  N
Sbjct: 460 ESGR-TYHFDGVDLAQALEQTLRTYQLNAKEKGINLVQELASNLPMVIGNYDLLLQVFGN 518

Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEE-------VILRVRDTGVGMTNYELEKAMKPFGQI 763
           ++ NA+ FTP+GG + I                V + + DTG+G+   + E     F ++
Sbjct: 519 LIGNALKFTPAGGIVAIRAYRVDVNRSGHNSPLVRIEISDTGIGIAPEDQEAIFDRFFRV 578

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
            N +    EGTGLGL + + +++ +  + ++ S    GT       L+D   P
Sbjct: 579 EN-RVHTLEGTGLGLSIVRNIMERHHSQMHLVSEVGVGTTFWFDLALFDEDKP 630


>gi|218887769|ref|YP_002437090.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
            'Miyazaki F']
 gi|218758723|gb|ACL09622.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
            'Miyazaki F']
          Length = 1358

 Score =  332 bits (852), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 122/815 (14%), Positives = 254/815 (31%), Gaps = 90/815 (11%)

Query: 53   NFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWN----IDAHGYLKEISEELPKTIGN 108
                     V+    +    +F  DP                  G L  + E+    I  
Sbjct: 414  PLAAPPGVEVAPAESVAGSGSFAGDPGWLASGHVPQYAPAAGRDGGLVLVVEDNRDMIAY 473

Query: 109  YAFKMIGMRLCDVSDILH----------IDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLY 158
                 I      V+              + P+  + D++  +                  
Sbjct: 474  IVD--ILRPHHQVAVAFDGEEGLRKALDLRPDLIVCDVMMPRVDGQRMVEQLRRYPGMAD 531

Query: 159  VPIDLAALPIYSR------NREFSGFRG---------FGIVHVNRVDNDPRALGKRLDKK 203
            VP+ +              +    G+             +    R     +A     + +
Sbjct: 532  VPVLMLTAKADDELRVHLLHGAVQGYIQKPFTAAGLLASVHAELRDRARHKAELDESETR 591

Query: 204  FSHLHEIKKGHSSVEKEKYDIFSQQ--SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY-- 259
            F    E      ++                       +++ L        + L ++    
Sbjct: 592  FRATFEQAAMGLALVAPDGSWLRVNGKLCAIVGYSAEELTKLRFQDITHPEYLDSDLALM 651

Query: 260  -PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES----FEYLSHRNHPSLSAY 314
              LL     +   ++ +                ++                +   +    
Sbjct: 652  HRLLAGTIDNYSLEKQYLRKGGEPVWVNLTVALVRKADGTPDYFISVVEDIQQRKTFERR 711

Query: 315  FDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
              E E    + V+  P   F+   G   YANP+  +L       +I   G L       +
Sbjct: 712  LAESEERFRQVVEHAPEAIFLQKEGRFAYANPAARVLFGVDDPKEIMGRGVLEFFHPDDR 771

Query: 375  LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
                  I+ +   R              IQ      +                       
Sbjct: 772  SMVVERIRQLNEERRTVPRGHV-----RIQRRDGTVVDAETSAVPFRLGGRH--GALVFV 824

Query: 435  PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
             +  D    +R++      L        + +  ++   ++L  NR+          +   
Sbjct: 825  RDISDRLWAEREIRD----LARFPGENPNPVMRVSPALVLLHANRSSGTFL-----ECYG 875

Query: 495  KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554
                        +     + E L     +T E   L            + +  +      
Sbjct: 876  ARVGSPFP----APFAEVVAESLRTWAPRTFEAQCLDRI-------YAMTVNPIADGGYA 924

Query: 555  SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
            ++   DI+E K  + +L +A+++AE  +  KS FLA +SHE+RTP+  ++G  +++    
Sbjct: 925  NIYGMDITERKNAELELINAREVAETATKAKSAFLANMSHELRTPMNGVLGMLQLLDATP 984

Query: 615  FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                 +P    Y      +G+ +  ++ DLLD++++ESG++ +  EP   +    E +++
Sbjct: 985  L----DPEQRGYVQVAHAAGSNLTRLLGDLLDLARVESGRLTIREEPFDFNGLTQEVLAV 1040

Query: 675  VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
            ++  A+ K I++  +       +L D + ++Q+ LNI+ NA+ FT  G  + +      +
Sbjct: 1041 LRPEADRKGIVLEAATDGMPGALLGDPQRIRQMLLNIVGNAVKFTDRG-HVRLLARFEPS 1099

Query: 735  E------------------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
                                + L V DTG+G+ +  L    +PF Q+ ++   R  G GL
Sbjct: 1100 AGPSATAEPGGQGEPGGQGTLYLAVEDTGIGIPSDMLGNIFEPFTQVEDAVSRRHGGAGL 1159

Query: 777  GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
            GL + + +VD   G+  + S   +GT + +  P+ 
Sbjct: 1160 GLSIVRRIVDLMEGEVSMTSEEGRGTTVTLRLPVA 1194



 Score =  154 bits (388), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 49/256 (19%), Positives = 96/256 (37%), Gaps = 17/256 (6%)

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           S  +    +L+     AE+    K+ F A +SHE+R   T +      ++        + 
Sbjct: 172 SRLRATNAELAARCARAEELDVLKTRFFANISHELR---TPLTLLLGPLERLLAETSEDD 228

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
            +      + R+  L+   V+D+LD+S++++G M        L        +     A +
Sbjct: 229 EHRHSLFTMLRNARLLHQHVDDMLDLSRVDAGAMQPRHAEADLSALTRTTCAYFDTLAAQ 288

Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
           + +         +     D    ++I LN+LSN+  FTP GG + ++      +E +L V
Sbjct: 289 RGMHYGVQAPLRL-DAQVDTDKYRRILLNLLSNSFKFTPDGGSVSVTLE-RQGDEALLSV 346

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQ------IRGEGTGLGLPLAKAMVDANMGKFYIF 795
            D G G+  +      + + Q     +        G        + K   + + G   + 
Sbjct: 347 SDDGPGVPAHLRGAVFERYRQSGEGARGLHGGSGLGL------AIVKEFAELHGGTTSVG 400

Query: 796 STPAKGTLIEIIFPLY 811
                G L ++  PL 
Sbjct: 401 QGAEGGALFQVRLPLA 416


>gi|260774546|ref|ZP_05883459.1| multi-sensor hybrid histidine kinase [Vibrio metschnikovii CIP
           69.14]
 gi|260610452|gb|EEX35658.1| multi-sensor hybrid histidine kinase [Vibrio metschnikovii CIP
           69.14]
          Length = 999

 Score =  332 bits (852), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 113/541 (20%), Positives = 197/541 (36%), Gaps = 42/541 (7%)

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPS----- 347
           + +   F  +            +    L    V   P    V Y        N S     
Sbjct: 207 DPTHRLFVSMQQPFDKPEPLPAEGVNPLVDAAVSLSPAGTLVNYQQQRYLQINRSLQELG 266

Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
           +++L      + +  A      L    L   + I    +  +             I    
Sbjct: 267 WVVLRAIPYTEAMAPAQTSFHRLLLITLIATSCIGLAGIGLAHSITKPIEKMTRRIDQMA 326

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD-GIA 466
           ++         +   +            E    +  +  +      L ++L+A S+  I 
Sbjct: 327 DSGRFDGNFLEQGGPEVCALARAMNRLAE--QRKTAEIALSQAERFLATVLDAASEISII 384

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL------- 519
             N+ G+I + N     L GY   +++ K     L               L         
Sbjct: 385 ATNKHGLITAFNTGAEHLLGYSKHEMIGKQTPASLHLEEEVAARSVELTALLGYPVEGFR 444

Query: 520 ------DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKN 569
                 +     ++      K  + + + +I+  +   +     Y     DI+E+K+   
Sbjct: 445 VFVDIAEQENHEKREWTYVHKNGRHIPVSLIVTTMRNEAGEITGYLGIAEDITEYKRM-- 502

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
                       +  KS+F++ VSHE+RTPLT+I G   +I   RF  L +         
Sbjct: 503 ------------NKMKSEFISTVSHELRTPLTSISGALGLIIGSRFEELPDKTQK-LLKT 549

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
             R+   +  ++NDLLDI KI +GK++       L   V +AI   Q Y + + + IR  
Sbjct: 550 AHRNNQRLSHLINDLLDIEKIAAGKLHFDMRLHELTLLVEQAIETNQHYGSSRDVSIRLI 609

Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749
              N   +  D + + Q+  N+LSNAI F+   GQ+I+  T T N + I+ V D G G+ 
Sbjct: 610 CDANTVLVHVDSQRLLQVLANLLSNAIKFSSDHGQVIVEVT-TDNGKAIVSVIDQGPGIN 668

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
               E+  + F Q  +S     EGTGLGL +++ +++   G+    ST  KG+    + P
Sbjct: 669 QAFRERIFQRFAQADSSDTRAKEGTGLGLAISRELIERMGGQIDFESTMGKGSRFFFVLP 728

Query: 810 L 810
           L
Sbjct: 729 L 729



 Score = 40.4 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 39/339 (11%), Positives = 90/339 (26%), Gaps = 30/339 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN--HIGDLL--------- 137
            + HG +   +      +G    +MIG +      +          +  LL         
Sbjct: 386 TNKHGLITAFNTGAEHLLGYSKHEMIGKQTPASLHLEEEVAARSVELTALLGYPVEGFRV 445

Query: 138 -----KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192
                +++N    + T     G   ++P+ L    + +   E +G+ G  I         
Sbjct: 446 FVDIAEQENHEKREWTYVHKNGR--HIPVSLIVTTMRNEAGEITGYLG--IAEDITEYKR 501

Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD 252
                 + +   +  HE++   +S+      I   +       + +K   L +     + 
Sbjct: 502 MNK--MKSEFISTVSHELRTPLTSISGALGLIIGSRF----EELPDKTQKLLKTAHRNNQ 555

Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
            L      LL  E+ +  +      ++      +Q   T Q+        +      +  
Sbjct: 556 RLSHLINDLLDIEKIAAGKLHFDMRLHELTLLVEQAIETNQHYGSSRDVSIRLICDANTV 615

Query: 313 AYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
               + + L     +       F   HG +               V  I+   G++    
Sbjct: 616 LVHVDSQRLLQVLANLLSNAIKFSSDHGQVIV---EVTTDNGKAIVSVIDQGPGINQAFR 672

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
                             + T +  +     I+      
Sbjct: 673 ERIFQRFAQADSSDTRAKEGTGLGLAISRELIERMGGQI 711


>gi|119945803|ref|YP_943483.1| fused multi-sensor protein [Psychromonas ingrahamii 37]
 gi|119864407|gb|ABM03884.1| PAS/PAC sensor hybrid histidine kinase [Psychromonas ingrahamii 37]
          Length = 882

 Score =  332 bits (852), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 103/395 (26%), Positives = 176/395 (44%), Gaps = 18/395 (4%)

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
                    K  +    L S+++   DG+  I+ + I+ S N A  ++FGY  E+++   
Sbjct: 215 VRRVHREILKAVMSEKHLSSVIDHMLDGLITIDAQCIVQSFNPAAERIFGYKSEEVVGGS 274

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQT--LEKITLGSTKEEKLLSLRIIIKKLP--FSS 552
             + + +   S  N YL   L   +  T  + +  +G  K+     L + I ++    + 
Sbjct: 275 VNILMPEPDYSEHNDYLKRHLDTGITNTTGISRKVVGKRKDGSTFPLDLSINEMHLSETH 334

Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
            +  T+ DIS  +Q + +L  AK+ AE+ S  K  FLA +SHEIRTPL  ++G  EV+  
Sbjct: 335 RFFCTVRDISVRQQHEQQLIAAKETAEQVSQAKDSFLATMSHEIRTPLAGMLGMLEVLSM 394

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
                  +            S   +L IVND+LD SKI+ GK+ L  +  S+   + E +
Sbjct: 395 SPL----DHEQEPILKAAWDSARNLLRIVNDILDWSKIQDGKLILSPQSTSIPMLLQEVV 450

Query: 673 SLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
           +     A+ K + +     + +      D   + Q+  N +SNA+ FT  G +I +    
Sbjct: 451 NTYSHVASAKNLKLWQHADSQLSAAHIVDPLRLSQVLNNFVSNALKFTEQG-EIELCAEL 509

Query: 732 ----TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
                S E +   V+DTGVG+      K  + F Q       +  GTGLGL +   + + 
Sbjct: 510 LEQLESGERIRFFVKDTGVGIPKIVQPKLFERFQQESADTARQYGGTGLGLSICLHLAEF 569

Query: 788 NMGKFYIFSTPAKGTLI--EIIFPLYDTSHPHDCI 820
             GK  + S P  G +    +I P+  ++ P + +
Sbjct: 570 LDGKIELVSEPGLGAIFSITVILPI--SAAPGEAL 602



 Score = 48.5 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 25/241 (10%), Positives = 71/241 (29%), Gaps = 17/241 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD-ILHIDPNNHIGDLLKRQNT----W 143
           IDA   ++  +    +  G  + +++G  +  +     + + N+++   L    T     
Sbjct: 246 IDAQCIVQSFNPAAERIFGYKSEEVVGGSVNILMPEPDYSEHNDYLKRHLDTGITNTTGI 305

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             K      +G+   + + +  +   S    F     F  V    V            + 
Sbjct: 306 SRKVVGKRKDGSTFPLDLSINEM-HLSETHRF-----FCTVRDISVRQQHEQQLIAAKET 359

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
              + + K    +           ++P   +    +V S++    H+ + +    +    
Sbjct: 360 AEQVSQAKDSFLATMSH-----EIRTPLAGMLGMLEVLSMSPLD-HEQEPILKAAWDSAR 413

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
           +    + +  D+  I   +        ++    +E     SH         +   ++   
Sbjct: 414 NLLRIVNDILDWSKIQDGKLILSPQSTSIPMLLQEVVNTYSHVASAKNLKLWQHADSQLS 473

Query: 324 E 324
            
Sbjct: 474 A 474


>gi|46581461|ref|YP_012269.1| sensory box histidine kinase/response regulator [Desulfovibrio
            vulgaris str. Hildenborough]
 gi|46450883|gb|AAS97529.1| sensory box histidine kinase/response regulator [Desulfovibrio
            vulgaris str. Hildenborough]
 gi|311235114|gb|ADP87968.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris RCH1]
          Length = 1223

 Score =  332 bits (852), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 115/769 (14%), Positives = 236/769 (30%), Gaps = 28/769 (3%)

Query: 60   ESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLC 119
              V+     +SE  +                               +G  A   IG    
Sbjct: 320  RLVTERALAESERRYRVLVENFPESAVMLFSDDKRCMLADGAGLAAMGITANSAIGRSPQ 379

Query: 120  DVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFR 179
            ++       P     D     + W G   L           I+L   P+     E S + 
Sbjct: 380  ELLPTHAAPPLAEAIDNALAGDVWRGSFIL-------GERLIELHVSPMPPLTEEESSYC 432

Query: 180  GFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEK-------EKYDIFSQQSPPP 232
               ++         R   +    + +    I +  S             +++       P
Sbjct: 433  -LAVLRDATEAERIRRELRDSAYRLNEAQRIARLGSFEANFVTGDCVWSHELLRLVGLSP 491

Query: 233  HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL 292
                 +  S    +   +   L+T  +  +    + +     F T +      + +    
Sbjct: 492  DDAPASLESFFERFAPEQRAWLETLLHGPMQGPLAVIEHSFPFRTADDRNRHGRLHLHFH 551

Query: 293  QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV-DKCPIPFFVYSHGNLFYANPSFLLL 351
            +  S             +           +   + +   I                    
Sbjct: 552  RGESGMPAIGYGTMQDITELHEATIALKRSEADLNEALHIAQMASITHEHGTGTTRISST 611

Query: 352  TKYKSVDDIEIAGGLSTLLD-APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
              +    +      +  L    P L                        +          
Sbjct: 612  LLHLLHAEGTGRPTVELLRQYMPSLLPLVRDGVAPPQHHQPPAGDGYRTVIPFTTVSGEQ 671

Query: 411  LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII-N 469
                       +     +   G   +       +  +        ++ +   +G+ ++ +
Sbjct: 672  RHGQLHLRTLRDVSGNAVVTRGAMQDVTYRVSIENALRRSESSYRALADNLPNGVVLLVD 731

Query: 470  REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
               I+                  +  P+T  L     + +   +            E   
Sbjct: 732  PADILRVAAGQGLHSLLDSGAPCIPAPYTTILPSPLATELMPLIMSAR-HGTTAHREIPY 790

Query: 530  LGSTKEEKLLSLRIIIKKLPFSSC-YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
              +  +   L L     +    +    L + D++  KQ + ++  ++  A   S  KS F
Sbjct: 791  GAAVFDVVALPLPGETHRTEGVAHDVMLLLQDVTSRKQWEEQMRASRDEAAAMSELKSQF 850

Query: 589  LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
            +A +SHE+RTPL+ I+G ++V       P        Y + +      +L ++NDLLD S
Sbjct: 851  VANISHEMRTPLSGILGIADVALTTEGNPAL---LRNYFSMVQNVAEGLLGVINDLLDFS 907

Query: 649  KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQI 707
            ++E+G+M L      L   V +A++ + + A  K + +     N +P  +  D   ++QI
Sbjct: 908  RLEAGRMPLDKVEYDLHTTVRDALAPLAMQAERKGLALELHMQNGLPLTLRGDPLRLRQI 967

Query: 708  ALNILSNAIHFTPSGG-QIIISTT---HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
             +N++ NA+ FTP G   + +ST        E ++  + DTG G+ + +L    + F Q 
Sbjct: 968  LVNLVGNAVKFTPQGTVHVDVSTGDGVTHDRECLVFTIEDTGPGIPHEKLAHIFESFAQA 1027

Query: 764  PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
              S   +  G+GLGL +++ +V+   G   + STP +G++     PL D
Sbjct: 1028 DGSYSRQHTGSGLGLAISRHLVELQGGDIGVQSTPGEGSVFWFTLPLGD 1076


>gi|237715073|ref|ZP_04545554.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262408978|ref|ZP_06085523.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_22]
 gi|229444906|gb|EEO50697.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262353189|gb|EEZ02284.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_22]
          Length = 785

 Score =  332 bits (852), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 109/624 (17%), Positives = 224/624 (35%), Gaps = 40/624 (6%)

Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD 252
              +   L    +  ++ + G   V  E+ +     +         ++     Y     +
Sbjct: 48  AVRILDSLPDMLTVFNQNEVGIEVVSNEETNHVGISNKDFKGMYMREMVPPEAYQNIHSN 107

Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
           + +      +++    L    + H      +   + +             L      +  
Sbjct: 108 MRQAVSTGAVSTAHHELDFNGEHHHYENRIFPLDEEY------------VLIMCRDITER 155

Query: 313 AYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
                   +    +DK       V   G L YAN  F+               G+  + D
Sbjct: 156 VTTQRQLEVFKSVLDKVSDSILAVSEDGTLVYANKQFIEEYGVT------QQMGIQKIYD 209

Query: 372 APKLS--DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
            P          + +   R +    A  A       ++E    ++     + N+      
Sbjct: 210 LPVSMTTKEAWERRLQEIRDNDGTFAYRAAYMRKGEDKERMHQVSTFLIRENNEE----L 265

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG--IILSTNRAVSKLFGY 487
                 +  D    + ++    + L  IL      + + + E     L  N+A +   G 
Sbjct: 266 TWFFTQDITDVIKKQDELRELNLLLDGILNNIPVYLFVKDPENDFRYLYWNKAFADHSGI 325

Query: 488 PVEDILRKPFTVFLE-QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
           P    +                      E+L    R  +++  L  T + +++     + 
Sbjct: 326 PASKAIGHTDYEVFPSHGDAEKFRKDDLELLQTHKRIDMQETYLSVTGKARIVQTLKALV 385

Query: 547 KLPFSSCY-SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
            +            DI+  +  + +L  A+  AE+    KS FLA +SHEIRTPL AI+G
Sbjct: 386 PMEGRKPLQIGISWDITNLQNIEQELIKARIKAEQSDRLKSAFLANMSHEIRTPLNAIVG 445

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
           FS+++               Y+  I+++ +++L ++ND+LD+SKIE+G +     P++L 
Sbjct: 446 FSQLL----PAAETAEEKKLYSGIINQNSDILLQLINDILDLSKIEAGTLEYIKRPMNLG 501

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725
           E      ++ +    E  + +     +    I  D   + Q+  N L+NA  FT +G +I
Sbjct: 502 EVCRTIYAVHKERVKE-GVTLVFDNEDENLFIEGDQNRIMQVITNFLTNASKFTYAG-EI 559

Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
            +    T    + + V+DTG+G+   +++   + F ++ +      +GTGLGL + + ++
Sbjct: 560 RLGFERTDKN-IRVYVKDTGIGIEPEKVDHIFERFVKLNSF----AQGTGLGLSICQMII 614

Query: 786 DANMGKFYIFSTPAKGTLIEIIFP 809
           +   G+  + S   KG+      P
Sbjct: 615 EKIGGEIGVTSELGKGSTFYFTIP 638


>gi|120601368|ref|YP_965768.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4]
 gi|120561597|gb|ABM27341.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4]
          Length = 1223

 Score =  332 bits (852), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 115/769 (14%), Positives = 236/769 (30%), Gaps = 28/769 (3%)

Query: 60   ESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLC 119
              V+     +SE  +                               +G  A   IG    
Sbjct: 320  RLVTERALAESERRYRVLVENFPESAVMLFSDDKRCMLADGAGLAAMGITANSAIGRSPQ 379

Query: 120  DVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFR 179
            ++       P     D     + W G   L           I+L   P+     E S + 
Sbjct: 380  ELLPAHAAPPLAEAIDNALAGDVWRGSFIL-------GERLIELHVSPMPPLTEEESSYC 432

Query: 180  GFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEK-------EKYDIFSQQSPPP 232
               ++         R   +    + +    I +  S             +++       P
Sbjct: 433  -LAVLRDATEAERIRRELRDSAYRLNEAQRIARLGSFEANFVTGDCVWSHELLRLVGLSP 491

Query: 233  HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL 292
                 +  S    +   +   L+T  +  +    + +     F T +      + +    
Sbjct: 492  DDAPASLESFFERFAPEQRAWLETLLHGPMQGPLAVIEHSFPFRTADDRNRHGRLHLHFH 551

Query: 293  QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV-DKCPIPFFVYSHGNLFYANPSFLLL 351
            +  S             +           +   + +   I                    
Sbjct: 552  RGESGMPAIGYGTMQDITELHEATIALKRSEADLNEALHIAQMASITHEHGTGTTRISST 611

Query: 352  TKYKSVDDIEIAGGLSTLLD-APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
              +    +      +  L    P L                        +          
Sbjct: 612  LLHLLHAEGTGRPTVELLRQYMPSLLPLVRDGVAPPQHHQPPAGDGYRTVIPFTTVSGEQ 671

Query: 411  LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII-N 469
                       +     +   G   +       +  +        ++ +   +G+ ++ +
Sbjct: 672  RHGQLHLRTLRDVSGNAVVTRGAIQDVTYRVSIENALRRSESSYRALADNLPNGVVLLVD 731

Query: 470  REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
               I+                  +  P+T  L     + +   +            E   
Sbjct: 732  PADILRVAAGQGLHSLLDSGAPCIPAPYTTILPSPLATELMPLIMSAR-HGTTAHREIPY 790

Query: 530  LGSTKEEKLLSLRIIIKKLPFSSC-YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
              +  +   L L     +    +    L + D++  KQ + ++  ++  A   S  KS F
Sbjct: 791  GAAVFDVVALPLPGETHRTEGVAHDVMLLLQDVTSRKQWEEQMRASRDEAAAMSELKSQF 850

Query: 589  LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
            +A +SHE+RTPL+ I+G ++V       P        Y + +      +L ++NDLLD S
Sbjct: 851  VANISHEMRTPLSGILGIADVALTTEGNPAL---LRNYFSMVQNVAEGLLGVINDLLDFS 907

Query: 649  KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQI 707
            ++E+G+M L      L   V +A++ + + A  K + +     N +P  +  D   ++QI
Sbjct: 908  RLEAGRMPLDKVEYDLHTTVRDALAPLAMQAERKGLALELHMQNGLPLTLRGDPLRLRQI 967

Query: 708  ALNILSNAIHFTPSGG-QIIISTT---HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
             +N++ NA+ FTP G   + +ST        E ++  + DTG G+ + +L    + F Q 
Sbjct: 968  LVNLVGNAVKFTPQGTVHVDVSTGDGVTHDRECLVFTIEDTGPGIPHEKLAHIFESFAQA 1027

Query: 764  PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
              S   +  G+GLGL +++ +V+   G   + STP +G++     PL D
Sbjct: 1028 DGSYSRQHTGSGLGLAISRHLVELQGGDIGVQSTPGEGSVFWFTLPLGD 1076


>gi|27378251|ref|NP_769780.1| two-component sensor histidine kinase [Bradyrhizobium japonicum
           USDA 110]
 gi|27351398|dbj|BAC48405.1| two-component sensor histidine kinase [Bradyrhizobium japonicum
           USDA 110]
          Length = 776

 Score =  332 bits (852), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 122/647 (18%), Positives = 250/647 (38%), Gaps = 53/647 (8%)

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
           D++      +    S  ++    I + Q      R    +S +T    +    +  +   
Sbjct: 131 DRRILARIPVDSDPSGNDRLLDSITTAQLLAAPPR-DGNISDMTLPNGNAAMAISRQIKS 189

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
           L           E     +                      +             D    
Sbjct: 190 LPGFVTVIQERNEPIWGSDAALSVTLSATTGFVVLILGFAFHWQSTRAREGDLINDAVRG 249

Query: 321 LTPETVDKCPIPFFVYSH--GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
                +++     + +    G + + + S   +      +++   G ++ L+ +  +   
Sbjct: 250 RIDTALNRGRCGLWDWDLSRGRI-FWSQSMFSMLGLDGRNELLTFGEVNALVKSDDIDLF 308

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
                ++  + D   I  + R+  +     + + +     + +     ++   GI  +  
Sbjct: 309 EIADQLISEKID--HIDQTFRMQHV---DGHWIWLRVRCEKTSGATDSSVHLIGIAVDIT 363

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPF 497
           + +    +     ++L   +E   +   + +    ++  N    +L   P   ++    +
Sbjct: 364 EQKSLAERTVEADLRLRDAIETIPEAFVLWDASDRLVLCNSHFQRLHKLPDSAVIPGTSY 423

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT 557
              LE      +     E  +        +       +   L +    ++      Y   
Sbjct: 424 ETVLEVGRMPEVRTRHNETAAQG---PGARTFEAQLDDGSWLHIS---ERRTKDGGYVSV 477

Query: 558 MHDISEWKQEKNKL-----------------------------------SHAKKIAEKES 582
             DI+  K+ + KL                                      K  AE+ +
Sbjct: 478 GTDITRIKEHEQKLVDNDLRLRATVIDLKRSQAALERQTNELADLAEKYQREKTRAEEAN 537

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
             KS FLA +SHE+RTPL AIIGFSE++ +  FG LG+ +Y EY   I  SG+ +L+++N
Sbjct: 538 QTKSKFLANMSHELRTPLNAIIGFSEIMGSGLFGELGSEKYQEYCQDILTSGHYLLEVIN 597

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702
           D+LD+SKIE+G+M L  E + L   ++E++ +V   A +K + +      +I  ++AD R
Sbjct: 598 DILDMSKIEAGRMKLDMEELDLARTLAESLRVVSGRAQDKHLTLDADIEKSI-SVVADRR 656

Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
           + KQI +N+LSNA+ FTP GG+I++ +    +  ++L + DTG+G+  + L +  +PF Q
Sbjct: 657 ATKQIIVNLLSNAVKFTPDGGRIVVRSRQLDD-RIVLMIADTGIGIAPHSLARLGRPFEQ 715

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           + +       G+GLGL +A+++   + G   + S    GT++ +  P
Sbjct: 716 VESQLTKTYHGSGLGLAIARSLAQLHGGSMRLRSKIDVGTVVRVTLP 762


>gi|90961026|ref|YP_534942.1| two-component sensor kinase yycG [Lactobacillus salivarius UCC118]
 gi|90820220|gb|ABD98859.1| Two-component sensor kinase yycG [Lactobacillus salivarius UCC118]
          Length = 621

 Score =  332 bits (852), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 85/399 (21%), Positives = 166/399 (41%), Gaps = 36/399 (9%)

Query: 423 QFPENMPQNGIEPEDVDTRINKRKM-EIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
              E                  +++ E E  +L S+L   SDG+   +R G I   N   
Sbjct: 234 GNDELGQLAQAVNNLSIRVEETQELSESERRRLDSVLSHMSDGVIATDRRGGITIVNDMA 293

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
                    ++L K     L+      +   L +   + L  + EK  + +         
Sbjct: 294 MNYLDISEGEVLGKSILDILDIRNQYTLRDLLEKQDEVVLDMSGEKDLILNA------YF 347

Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
            +I ++  F S     +HD++E ++                  +  F++ VSHE+RTPLT
Sbjct: 348 SVIQRESGFISGIVCVLHDVTEQQKI--------------DRERKQFVSNVSHELRTPLT 393

Query: 602 AIIGFSEVIKNQRFGPLGNPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
           ++  + E + +   G   + +   E+        + ++ ++NDLL +S+++SG + L  E
Sbjct: 394 SMRSYIEALND---GAWRDEKVAPEFLKVTQDETDRMIRMINDLLSLSRMDSGTVKLDLE 450

Query: 661 PVSLDEAVSEAISLVQLYANEKRI----------LIRTSFANNIPRILADLRSVKQIALN 710
            V+++  V+  +    +   + +I           I+  F      +  D     Q+  N
Sbjct: 451 LVNINGLVNYILDRFDMMLKKDKIDTRDIKTKNYTIKRDFTKRDLWVELDTDKFIQVVDN 510

Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           I++NAI ++P GG I       ++  VIL + D G+G+   +L      F ++  ++   
Sbjct: 511 IMNNAIKYSPDGGVITCRL-LETHNNVILSISDQGLGIPKKDLGHVFDRFFRVDKARSRA 569

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             GTGLGL ++K +++ + G+ ++ S   KG+   I  P
Sbjct: 570 QGGTGLGLAISKEVIELHHGRIWVDSVEGKGSTFYISLP 608


>gi|53723264|ref|YP_112249.1| sensor kinase/response regulator fusion protein [Burkholderia
           pseudomallei K96243]
 gi|52213678|emb|CAH39732.1| putative sensor kinase/response regulator fusion protein
           [Burkholderia pseudomallei K96243]
          Length = 771

 Score =  332 bits (852), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 104/519 (20%), Positives = 180/519 (34%), Gaps = 27/519 (5%)

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEI 362
           S R + +L              +        V   HG L Y NPS   L        +  
Sbjct: 111 SRRANDALRRREAAARRYYETLLQSLTQGVVVSDRHGMLTYMNPSAAALIGC-DATAVRG 169

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
                                +          +       +  +    + +        +
Sbjct: 170 LPFRDVYRAYDGRGARVRASALEHVLRSGRSASVEGH--WLAPHDGQRVPIAEAASPLVD 227

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
              +      I  +    R      ++    L  ++EA+ D I  +     I S N A  
Sbjct: 228 SAGDMTGAVLIVRDISIERERSAASQM----LRRLVEASPDAIVGVGSNRRITSWNPAAR 283

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
           ++FGY           + +           L E +            L   ++   +   
Sbjct: 284 RMFGYDEHAARGCDVAMLIAPRWLRNHP--LPESVPDMREPIENVDVLCVRQDGGRMRAT 341

Query: 543 IIIKKLPFSSCYSL----TMHDISEWKQEKNK-------LSHAKKIAEKESSHKSDFLAR 591
           +    +       +    T+ D  E ++ + +          A++ A+  +  K + LA 
Sbjct: 342 MSASPVFDERDACIALSLTLRDTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLAT 401

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           VSHE+RTPL  I G+ EV++N   G L      +  + IDRS   +  +V D+LD S + 
Sbjct: 402 VSHELRTPLNVIYGWIEVLRNPVDGAL----QQQAIDAIDRSARSLSRMVGDILDASSLA 457

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
           +GK+ L   PV L   V++    +   A    I +    A     +  D   ++Q+  N+
Sbjct: 458 TGKLRLDAMPVDLVRIVNDVTGALGAAAQADGIALSVECALGTCIVSGDGERLRQMLSNL 517

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           LSNA  FTP GG++ +S       +  L V DTG G++   L    + F +   +     
Sbjct: 518 LSNAFKFTPRGGRVTVSLERHD-AQAKLTVADTGQGISPEFLPHVFEAFRRAEGAPASPR 576

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFP 809
            G GLGL + + + + + GK    S    +GT   I  P
Sbjct: 577 RGLGLGLSIVRHIAELHGGKVEAASAGKNRGTTFAITLP 615



 Score = 65.4 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/225 (12%), Positives = 54/225 (24%), Gaps = 5/225 (2%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK---RQNTWYGK 146
           D HG L  ++      IG  A  + G+   DV               L+   R       
Sbjct: 144 DRHGMLTYMNPSAAALIGCDATAVRGLPFRDVYRAYDGRGARVRASALEHVLRSGRSASV 203

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
              W        VPI  AA P+     + +G     IV    ++ +  A  + L +    
Sbjct: 204 EGHWLAPHDGQRVPIAEAASPLVDSAGDMTGA--VLIVRDISIERERSAASQMLRRLVEA 261

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
             +   G  S  +      + +    +     +   +    A +          +    E
Sbjct: 262 SPDAIVGVGSNRRITSWNPAARRMFGYDEHAARGCDVAMLIAPRWLRNHPLPESVPDMRE 321

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
                       +  +         + +                 
Sbjct: 322 PIENVDVLCVRQDGGRMRATMSASPVFDERDACIALSLTLRDTGE 366


>gi|322418816|ref|YP_004198039.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
 gi|320125203|gb|ADW12763.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
          Length = 856

 Score =  332 bits (852), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 102/575 (17%), Positives = 193/575 (33%), Gaps = 51/575 (8%)

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
                 L +  +S    E    I+ ++         +   S      + +          
Sbjct: 170 RTDPVALLAVGNSAQNAEFSRRISDSEEALFGVGNLVGLLSPAIENQIHYAGMKKALEQE 229

Query: 316 DEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEI--AGGLSTLLDA 372
              E       +      F     G     N +   +  Y++ +D+          L   
Sbjct: 230 RVAEAKYRGIFENAMEGIFQTTPQGRFLSCNSATAAILGYETPEDVLEYVVDIGRQLYVD 289

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
           PK  +      +M  R +               N  + + +        ++    +  +G
Sbjct: 290 PKRREELYG--MMYQRQNVKNFEVEFY-----RNDGSKIWVNLSTRPAFDENGAFIYIDG 342

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
           I  +  + +  +  +     +L  ++E +   I I +  G I   N    +L GY +E++
Sbjct: 343 IIQDITERKRAEEALR----KLSQVVEQSPVSIVITDTAGRIEFVNPKFVQLTGYSLEEV 398

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
             K              +  L E ++    +  E   L   K  +  S    I  +   +
Sbjct: 399 RGKNPRFLNSGKDGPEASEKLWETITAG--EVWEGEFLNRKKSGEFFSEHATISPIRDGN 456

Query: 553 C----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                +     DI+E K  + +L  ++K+              V+H+    L+ I+G ++
Sbjct: 457 GVITHFLAIKEDITERKLLEAQLFQSQKM-----ESIGRLAGGVAHDFNNMLSVILGCAQ 511

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
           +   +     G+P + +    I  +G    +I   LL  S+ ES    +    V+L+E  
Sbjct: 512 LALRE--AEEGSPLWQD-LEQIMHAGKRSSEITRQLLAFSRNES----VTLREVTLNEQF 564

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
            E    +      + I +    A ++  + AD   + QI +N+  NA      GG + I 
Sbjct: 565 VEMQKTL-GRLLGEDIKVTFKPAPHLWSVKADTTQLDQILVNLAVNARDAMSKGGLLTIE 623

Query: 729 TT--------------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           T+               +  + V L V D G GM    L    +PF          G+GT
Sbjct: 624 TSNVRVDRKYSQFHLDASPGDYVQLSVSDNGCGMDRETLSHIFEPFFTTK----EVGKGT 679

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GLGL     +V  + G   ++S P +GT  +I FP
Sbjct: 680 GLGLATVYGIVRQHNGFINVYSEPGQGTTFQINFP 714



 Score = 70.8 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 34/312 (10%), Positives = 93/312 (29%), Gaps = 18/312 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH---IGDLLKRQNT 142
            +     G     +      +G    + +   + D+   L++DP       G + +RQN 
Sbjct: 247 IFQTTPQGRFLSCNSATAAILGYETPEDVLEYVVDIGRQLYVDPKRREELYGMMYQRQNV 306

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
              +   +  +G+   + ++L+  P +  N  F    G  I+             ++L  
Sbjct: 307 KNFEVEFYRNDGS--KIWVNLSTRPAFDENGAFIYIDG--IIQDITERKRAEEALRKL-- 360

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEKYP 260
             S + E       +      I         L      +V      + +           
Sbjct: 361 --SQVVEQSPVSIVITDTAGRIEFVNPKFVQLTGYSLEEVRGKNPRFLNSGKDGPEASEK 418

Query: 261 LLTSEESSLPEQEDF--HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
           L  +  +    + +F     +   +++      +++ +     +L+ +   +     +  
Sbjct: 419 LWETITAGEVWEGEFLNRKKSGEFFSEHATISPIRDGNGVITHFLAIKEDITERKLLEAQ 478

Query: 319 ENLTP--ETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
              +   E++ +       +   N+         L   ++ +   +   L  ++ A K S
Sbjct: 479 LFQSQKMESIGRLAGGVA-HDFNNMLSVILGCAQLALREAEEGSPLWQDLEQIMHAGKRS 537

Query: 377 DNNAIKPVMLYR 388
                + +   R
Sbjct: 538 SEITRQLLAFSR 549


>gi|261420882|ref|YP_003254564.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y412MC61]
 gi|319768553|ref|YP_004134054.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y412MC52]
 gi|261377339|gb|ACX80082.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y412MC61]
 gi|317113419|gb|ADU95911.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y412MC52]
          Length = 609

 Score =  332 bits (852), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 91/390 (23%), Positives = 161/390 (41%), Gaps = 25/390 (6%)

Query: 426 ENMPQNGIEPEDVDTRINKRKM--EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           + + Q  +   ++  ++ + +   E E  +L S+L   +DG+   +R G ++  N A   
Sbjct: 235 DEIGQLAMTFNNLTKKLQEAQATTEGERRKLESVLTHMTDGVIATDRRGRVILINDAALN 294

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +     E +L       L           L E  SL L  + ++             L +
Sbjct: 295 ILNVSRETVLSSSIVDVLGIADQYTFETLLEERDSLILDFSTDEELYILRAS-----LSV 349

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
           I K+  F +   + +HDI+E ++                  +  F+A VSHE+RTPLT +
Sbjct: 350 IQKEGGFVNGLIVVLHDITEQEKI--------------DRERRQFVANVSHELRTPLTTM 395

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
             + E + +  +          +   +      ++ +VNDLL +SK++S    L    ++
Sbjct: 396 KSYLEALGDGAWQ--DKDIAPRFIQVVQNETERMIRLVNDLLHLSKLDSKDYKLKKTWIN 453

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
                 + I   +       I            I  D   + Q+  NI+SNA+ ++P GG
Sbjct: 454 FSAYFHKVIDRFE-LTKSDNIRFVRKIPREAIFIEVDEDKITQVLDNIISNALKYSPQGG 512

Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
            I         +E+I+ V D GVG+   +L K  + F ++  ++  +  GTGLGL +AK 
Sbjct: 513 TITFRVR-ELADEIIVSVSDEGVGIPKADLAKIFERFYRVDKARSRKLGGTGLGLAIAKE 571

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
           +V A+ G  +  S   KGT I    PL   
Sbjct: 572 VVVAHGGTIWAESKEHKGTTIYFTLPLERE 601


>gi|146338894|ref|YP_001203942.1| hypothetical protein BRADO1833 [Bradyrhizobium sp. ORS278]
 gi|146191700|emb|CAL75705.1| conserved hypothetical protein; putative sensor histidine kinase
           with a response regulator receiver domain
           [Bradyrhizobium sp. ORS278]
          Length = 787

 Score =  332 bits (852), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 93/551 (16%), Positives = 195/551 (35%), Gaps = 65/551 (11%)

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLF-------YANPSFLLLTKYKSV 357
                +++           +T         +   G+           +     +T  + +
Sbjct: 87  SAQARAMTQALTRQNEQLAQTTKLLNEAQRIGRLGHWMTAEGDAAVWSEELFEITGLEPL 146

Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
             +  +  +  +         +    +           A  +   +         +  + 
Sbjct: 147 SSVSFSKMIEII------HPEDVGTYIRARDRTLKTGCALKQDLRVIRPDGEIRWIRIVA 200

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
               +       + GI  +  + +  +   +     L   +EA + G  + +++   + +
Sbjct: 201 DPIDDVDGRFRERFGIVQDITERKQAEVAADQAQQLLLDAIEALTKGFVLFDKDDRFVLS 260

Query: 478 NRAVSKLF---------GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528
           N    ++F         G    D++RK     L +        +L    +        ++
Sbjct: 261 NTRFREMFPGWATLMRPGISFTDLMRKAHDHGLVRPKGDGFEDWLERKRA--WHLGGSRM 318

Query: 529 TLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA-------------K 575
                   + +     +            + DI+ +K  + +L                +
Sbjct: 319 IEHREINGRWIQ---SVDHRISDGGTVCLVTDITAFKTVQAELEQKLAYVQAIRSDLEEQ 375

Query: 576 KIAEKESSH---------------KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           K   + +                 KSDFLA +SHEIRTPL+ ++G  ++++    G   N
Sbjct: 376 KRELEATGAELRAARDAAEAANRAKSDFLAIMSHEIRTPLSGMVGMVDLLR----GTSLN 431

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
                Y +    S +L+L ++ND+LD SK+E+GK+        +   V  A+S +   A 
Sbjct: 432 DEQKRYTSLAKESADLLLQVINDILDFSKLEAGKLKSECIDFDVPSLVESAVSFMGEKAR 491

Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT--SNEEV 737
            + + ++ SFA  +P+ +  D   ++Q+ LN++ NAI FT  G  I +  +H    +  V
Sbjct: 492 RRGLDLKVSFAPGLPQYLEGDPTRIRQVMLNLVGNAIKFTEQGA-IEVHASHRELDDGAV 550

Query: 738 --ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
              + V D+G+GM+     +   PF Q   S   +  G+GLGL + K +     G   + 
Sbjct: 551 DLRIEVIDSGIGMSQEIQAQIFDPFVQADTSISRKYGGSGLGLAICKQLCAIMGGSIGVE 610

Query: 796 STPAKGTLIEI 806
           S P +G+    
Sbjct: 611 SEPGRGSRFWF 621


>gi|298247503|ref|ZP_06971308.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297550162|gb|EFH84028.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 635

 Score =  332 bits (852), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 96/636 (15%), Positives = 207/636 (32%), Gaps = 36/636 (5%)

Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP-----PHLRMKNKV 240
                       K  ++ F  L E         +                        + 
Sbjct: 21  HGDEQKRAEQQLKASEENFRVLAETVPQLVWTAQPDGLHEYTNQRWRDYTGFAPERVQRW 80

Query: 241 SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF 300
             L   +       +      L + E    E    +               +++++ +  
Sbjct: 81  DHLQFLHPDDRARNQALWRHALDTGEMFECEGRLRNGQTGVYRWVLTRAMPVRDDTGQIV 140

Query: 301 EYLSHRNHP----SLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYK 355
           ++                  E         +  P   +V    G   Y N  +   T   
Sbjct: 141 KWFGTCTDIEKQKRAEQQLKESRESLRVLAETVPQQVWVTRSDGQHDYMNQRWRDYTGLT 200

Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
              +   +   + L                      T      RL   Q           
Sbjct: 201 H--EHIQSDRWAHLQFIHPDDRAGNQALWQHALDTGTMYEHEERLRNGQ--NGEYRWFLT 256

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
                 ++  + +   G   +  D +  +  +     +   ++ ++  GI++I  E  I+
Sbjct: 257 RAMPMRDEGGQIVKWFGTSTDIEDQKRAEEALRQSQERASVLMNSSMIGISVIEGE-QIV 315

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
             N    ++ GY  ED+        +    P  +         L  +Q++        K+
Sbjct: 316 DANDTFLRMTGYTREDLRAGRM-NVMRMTLPEHLACTRQAHQELTTQQSVTYEKEYVCKD 374

Query: 536 EKLLSLRIIIKKLPFSSCYSLTMH-DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
              L + +    L      +++   D S  K+ + +              K DF++  +H
Sbjct: 375 GSRLPVLVCGVVLKQHPLQAISFVLDNSARKELEQR--------------KDDFISMANH 420

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           E++TPLTA+    + +  +R      P        ++     +  ++ +LLD+S++++G 
Sbjct: 421 ELKTPLTAVKLQIQ-LVRKRLEKHSQPEAATALARVEGPIKQLERLITELLDVSRMQAGS 479

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714
           +    E V LDE + E  + +        IL+  S   ++   + D   + Q+  N++SN
Sbjct: 480 LEYRRERVDLDELLREVTATIHHLHPSHTILVCGSVRASL---VGDRDRLGQVFTNLISN 536

Query: 715 AIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           AI ++P    + +  + + +  V + VRD G+G+   + +K  + F ++ + +Q    G 
Sbjct: 537 AIKYSPDAEAVEVDLSPSEDA-VTVHVRDHGLGIPREQRDKIFERFYRVTDLRQRAIPGL 595

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           G+GL +   +V  + G   + ST  KG+   +  PL
Sbjct: 596 GMGLYIVAEIVKHHEGTITVDSTVGKGSTFTVTLPL 631



 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/422 (8%), Positives = 97/422 (22%), Gaps = 29/422 (6%)

Query: 51  QSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYA 110
           ++     +++  +      SE  F         +  W     G  +  ++      G   
Sbjct: 16  KAPIMHGDEQKRAEQQLKASEENFRVLAETVP-QLVWTAQPDGLHEYTNQRWRDYTGFAP 74

Query: 111 FKMIGMRLCDVSDILHIDPNNHI-GDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIY 169
            ++                N  +    L     +  +        T +Y  +   A+P+ 
Sbjct: 75  ERVQRWDHLQFLHPDDRARNQALWRHALDTGEMFECEG-RLRNGQTGVYRWVLTRAMPVR 133

Query: 170 SRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS 229
               +    + FG               K   +    L E       V +          
Sbjct: 134 DDTGQIV--KWFGTCTDIEKQKRAEQQLKESRESLRVLAETVPQQVWVTRSDGQHDYMNQ 191

Query: 230 PPPHLR-------MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQ 282
                          ++ + L   +       +      L +      E+   +  N   
Sbjct: 192 RWRDYTGLTHEHIQSDRWAHLQFIHPDDRAGNQALWQHALDTGTMYEHEERLRNGQNGEY 251

Query: 283 YTKKQYFGTLQNNSKESFEYLSHRNHP----SLSAYFDEGENLTPETVDKCPIPFFVYSH 338
                    +++   +  ++                  + +      ++   I   V   
Sbjct: 252 RWFLTRAMPMRDEGGQIVKWFGTSTDIEDQKRAEEALRQSQERASVLMNSSMIGISVIEG 311

Query: 339 GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398
             +  AN +FL +T Y   +D+         +  P+           L        + + 
Sbjct: 312 EQIVDANDTFLRMTGYTR-EDLRAGRMNVMRMTLPEHLACTRQAHQELTTQQ----SVTY 366

Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458
               +  +      +      K       +       ++      ++++E       S+ 
Sbjct: 367 EKEYVCKDGSRLPVLVCGVVLKQ----HPLQAISFVLDNS----ARKELEQRKDDFISMA 418

Query: 459 EA 460
             
Sbjct: 419 NH 420


>gi|120603530|ref|YP_967930.1| signal transduction histidine kinase with CheB and CheR activity
            [Desulfovibrio vulgaris DP4]
 gi|120563759|gb|ABM29503.1| signal transduction histidine kinase with CheB and CheR activity
            [Desulfovibrio vulgaris DP4]
          Length = 1535

 Score =  332 bits (852), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 118/649 (18%), Positives = 219/649 (33%), Gaps = 29/649 (4%)

Query: 185  HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244
             VN          + L + ++ L +      +   E   +    +    +          
Sbjct: 749  TVNAEFERKNDQLRILGEDYAQLFDTIPIAIASLDESLRVRRFNAGMSAIFHLQPHDVGR 808

Query: 245  EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
                    +++ +      +   S     D      +    +Q    +++ +  +   L 
Sbjct: 809  PLQQIASCLVEPDNLFKSLALGLSEGGTHDSEARLTDGRWCQQRIHAVRDETGATEHMLL 868

Query: 305  HRNHPSL---SAYFDEGENLTPETVDKCPIPFF----VYSHG-NLFYANPSFLLLTKYKS 356
                 +    +    +      E     P   F     +     + Y     + L     
Sbjct: 869  TFMDITHVKHAEAMRQEARSLDEVSRNVPGVVFKLCAPHDGNIRVEYVGGGTVELCGLSQ 928

Query: 357  VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
             +       L  L   P +  +       +  +D         +          + +   
Sbjct: 929  EEIKADPHALVALF-GPDVVPHILAG---ISATDGEGTPVDVEIPLHCTGGTKWVHVQAT 984

Query: 417  PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476
                     E     G+  +  + R +  +M     +   IL+     I   +  G    
Sbjct: 985  STPARGGGTE---WYGVAVDATERRYDATRMHNAADRYLRILDHAPMLIWRSDTTGACDW 1041

Query: 477  TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
             N       G  +E      +   +  +          +  +  L+Q  E        + 
Sbjct: 1042 FNTTWLDFTGRTMEQEYGYGWAEGVHPDDYDRCVSIYQKAFA--LQQAFEMNYRLKRHDG 1099

Query: 537  KLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
            +   L    K LP        +    +DI++       +  A K AE+ +  KS+FLA V
Sbjct: 1100 QFRWLVDCGKPLPDLDGTFSGFIGYCYDITDAVNALESMCEASKRAEEANRTKSEFLANV 1159

Query: 593  SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
            SHE+RTPL   +G    +         +P   +Y     RSG  ++ +++D+LD+S+IE+
Sbjct: 1160 SHELRTPLNGALG----MLQLLELSSLSPEQRQYVTTAIRSGQNLVRLLSDILDLSRIEA 1215

Query: 653  GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNI 711
            GK+ +   P  + E V E  S   L A  K I + T+ A   P  +  D   ++Q   N+
Sbjct: 1216 GKLVIEAIPCDIKELVDEVFSTFSLDATGKGITLETTIAPGTPTYVRTDPLRLRQTLFNL 1275

Query: 712  LSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
            + NA+ FT  GG ++  ST     + ++L   VRDTG G+    +E   +PF Q+  S  
Sbjct: 1276 VGNAVKFTEKGGVRVEFSTASMRGDAIVLFCTVRDTGPGIPEDRIESIFQPFTQLDGSYT 1335

Query: 769  IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
             R  G GLGL +   +++   G   + S P  GT +    P+  T  P 
Sbjct: 1336 RRHSGLGLGLGIVCRLMELFGGSIEVESAPNMGTAMHFAIPVGKTRRPQ 1384



 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/226 (11%), Positives = 52/226 (23%), Gaps = 11/226 (4%)

Query: 80   PRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI-GDLLK 138
                   W  D  G     +       G    +  G    +       D    I      
Sbjct: 1024 DHAPMLIWRSDTTGACDWFNTTWLDFTGRTMEQEYGYGWAEGVHPDDYDRCVSIYQKAFA 1083

Query: 139  RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
             Q  +     L   +G   +  +     P+   +  FSGF G+   +      +      
Sbjct: 1084 LQQAFEMNYRLKRHDG--QFRWLVDCGKPLPDLDGTFSGFIGY--CYDITDAVNALESMC 1139

Query: 199  RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
               K+    +  K    +    +         P +  +           + +     T  
Sbjct: 1140 EASKRAEEANRTKSEFLANVSHELRT------PLNGALGMLQLLELSSLSPEQRQYVTTA 1193

Query: 259  YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
                 +    L +  D   I   +   +     ++    E F   S
Sbjct: 1194 IRSGQNLVRLLSDILDLSRIEAGKLVIEAIPCDIKELVDEVFSTFS 1239


>gi|323528804|ref|YP_004230956.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1001]
 gi|323385806|gb|ADX57896.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1001]
          Length = 943

 Score =  332 bits (852), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 127/737 (17%), Positives = 266/737 (36%), Gaps = 63/737 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID    +  +S+   + + +   ++    +  V   L +D    I   L+ + +   +  
Sbjct: 102 IDRESNVVHLSDNAGRFLRHVGGELSSNIMTLVLPDLRLDLRTAIFRALQTRTSVEARRV 161

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
            W  +G      I++   P                        +   L    D+   H+ 
Sbjct: 162 KWVHDG--QVSWINMTVRPFRD------------------AVANAEFLLIVFDEVAGHMT 201

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           + ++  ++ +            P   +++ ++    E  A   +  +T    L  S E  
Sbjct: 202 DEEQAEATGQD-----------PVLAQLEQELQHSREQLATIIEQYETSVEELKASNEEL 250

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
               E+  + +    + K+   ++      +   +  R   +  A  D    +    +  
Sbjct: 251 QAINEELRSTSEELESSKEELQSVNEELTTANAEMQARIEDTAKANDDLHNIIASSEI-- 308

Query: 329 CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388
                FV     +    P+   +      D       ++  L  P L+D+       L  
Sbjct: 309 --ATVFVDKEIRVKRFTPNATAIFNLIDSDIGRSLFHITHTLRYPTLADDVRQSFQSLRL 366

Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
           ++R           IQ        M  +P+  A+             +  D    +    
Sbjct: 367 TERE----------IQSEAGRWYLMRLLPYRTAD--DHIDGAVITLIDITDRHEAEEAAR 414

Query: 449 IEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
               +L  + ++T D  I I +  G I+S N    ++FGY   +++ +   +  E N   
Sbjct: 415 AGERRLRLVAQSTKDYAIVIQDSAGTIVSWNAGAERIFGYSEGEVVGQNIELIYEHNDRQ 474

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWK 565
            +       ++       +      TK+ + +    ++  +  +  + ++  + D++  K
Sbjct: 475 ALLPAQERDIAA-KEGRADDERWHRTKDGRRIFCSGVVTPIVDTSFNGFAKILRDLTARK 533

Query: 566 QEKNKLSHA-------KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
           Q ++    A       ++ A   +  K +F+A +SHE++ PL  I   +E++        
Sbjct: 534 QREDASREALAREQAAREQALSANQLKDEFIAVLSHELKHPLNLIGVKAEMLPRLPEVRH 593

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
             P   + A  I  +      I++DLLD+S+I++GK+ L    V L   +++     +  
Sbjct: 594 L-PAVWDAAASIRHAVRSQAQIIDDLLDLSRIQTGKLALEVSRVDLAALIADIADTCEED 652

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738
           A+ + + ++   A+     LAD    +QI  N+LSNA+ FT SGG + +  +      + 
Sbjct: 653 AHARGVALQVEVADEPAITLADPVRCEQIFWNLLSNAMKFTDSGGHVEVRLS-RDGRMLR 711

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST- 797
           L V D+G G+    L      F Q P  +     G G+GL L + +V+ + G     S  
Sbjct: 712 LEVTDSGQGIEPATLPYIFDMFRQTPRGRSR--GGLGIGLALVRQLVEMHGGHVKAESEG 769

Query: 798 PAKGTLIEIIFPLYDTS 814
           P  GT + +  P  +  
Sbjct: 770 PGHGTRMTVWLPAMEDE 786


>gi|264678130|ref|YP_003278037.1| multi-sensor signal transduction histidine kinase [Comamonas
           testosteroni CNB-2]
 gi|262208643|gb|ACY32741.1| multi-sensor signal transduction histidine kinase [Comamonas
           testosteroni CNB-2]
          Length = 841

 Score =  332 bits (852), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 106/511 (20%), Positives = 197/511 (38%), Gaps = 20/511 (3%)

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEI 362
           +HR      A     E      +       F     G L + N  + +LT   S   +  
Sbjct: 333 AHREMDRAQAKLARSEQELAVLMRSVQELIFRTDKDGRLTFVNARWEMLTGQPSKQALG- 391

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
                  L+            V+L    R  +        +   RE    +  +P     
Sbjct: 392 -----LRLEKIVEPQFRPQVKVLLDAKSRQSLRTCQAQFALPNEREILCDIAVVPLT--- 443

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
           +  E +   G   +       +++++ ++     + E+T   + + +    I   N+A  
Sbjct: 444 KHGEIIGFAGSAVDVTARWKAQQELQTQLAFQHLLFESTPLPLLVTDEAHRITIANKAWE 503

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
           +  G     ++             +        +L+   R  L+   +    +     ++
Sbjct: 504 EFSGSNSLQVMGSNLQDICASEDATKQLRTNDIVLASGQRTVLDTKVI--HADGTYRDMQ 561

Query: 543 IIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
           I    +               D++E++  +     A+  AE+    KS+F+A +SHE+RT
Sbjct: 562 ITKTAIKDVRGRPTGVLSIFVDVTEFRIAELATREARDAAEEAFRVKSEFVANMSHELRT 621

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
           PL +IIGFSE+    +      P+  E    I  +G  +L +VNDLLD++K+ES   ++H
Sbjct: 622 PLQSIIGFSEL---GQLRSRATPKLGEMFYDIHAAGQRMLALVNDLLDVAKLESPVGSIH 678

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718
            E V L   +      ++   ++K+I +R    +      AD    +Q+  N+L+NAI F
Sbjct: 679 TEKVDLRGLIRPVARELEPLLHQKQIDLRLRLEDAPLIAKADPVRFQQVIRNMLANAIKF 738

Query: 719 TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
           +   G+I +         + +   D G G+   EL+K  +PF Q  +  +    GTGLGL
Sbjct: 739 SLPHGRIDVEGHFDGQGNICVDFLDQGPGVPTQELDKIFQPFVQ-SSKTKDGSGGTGLGL 797

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            + + ++DA  G     + P  G +  I  P
Sbjct: 798 AICRKIIDAMDGTITAANRPDGGAVFRITLP 828



 Score = 55.0 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/247 (11%), Positives = 70/247 (28%), Gaps = 9/247 (3%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144
             +  D  G L  ++       G  + + +G+RL  + +         + D  K + +  
Sbjct: 361 LIFRTDKDGRLTFVNARWEMLTGQPSKQALGLRLEKIVEPQFRPQVKVLLDA-KSRQSLR 419

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
                + +      +  D+A +P+ +++ E  GF G  +          +   +      
Sbjct: 420 TCQAQFALPNERE-ILCDIAVVPL-TKHGEIIGFAGSAV--DVTARWKAQQELQTQLAFQ 475

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV----SSLTEYYAHKDDVLKTEKYP 260
             L E       V  E + I             N +    S+L +  A +D   +     
Sbjct: 476 HLLFESTPLPLLVTDEAHRITIANKAWEEFSGSNSLQVMGSNLQDICASEDATKQLRTND 535

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
           ++ +              +      +     +++        LS     +     +    
Sbjct: 536 IVLASGQRTVLDTKVIHADGTYRDMQITKTAIKDVRGRPTGVLSIFVDVTEFRIAELATR 595

Query: 321 LTPETVD 327
              +  +
Sbjct: 596 EARDAAE 602


>gi|229010880|ref|ZP_04168077.1| hypothetical protein bmyco0001_13350 [Bacillus mycoides DSM 2048]
 gi|228750554|gb|EEM00383.1| hypothetical protein bmyco0001_13350 [Bacillus mycoides DSM 2048]
          Length = 591

 Score =  332 bits (852), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 82/365 (22%), Positives = 157/365 (43%), Gaps = 27/365 (7%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            ++ E  QL SIL + +DG+  +N+EG ++  N           E+   +          
Sbjct: 249 ALQQEKEQLASILSSMADGVVTLNQEGEVVVINPPAEHFLQVWQEEKEVELIKKL----- 303

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
           PS +      ++  + +Q +E        +   + L   +            + D++E +
Sbjct: 304 PSELVELFHLVVESEQQQVVEINLQ----KGNYVVLMTPLYNQTKIRGAVAVLRDMTEER 359

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + +                + DF+A VSHE+RTP+  + G+SE I +            E
Sbjct: 360 RLE--------------KMRQDFIANVSHELRTPMVMLQGYSEAILDDIVQT--KEEINE 403

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           +   I      +  +VN+LLD++++ESG + LH   V +   V +     Q  A +K + 
Sbjct: 404 FVQIIYDESVRLGKLVNELLDLARMESGHVELHIGEVDIHPFVEKIGRKFQGIAKDKEVQ 463

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +   F + I +   D   ++Q+  N++ NAI  T +GG + +     ++  +   V+D+G
Sbjct: 464 LTVDFQSPIEQYTFDADRMEQVLTNLIDNAIRHTNAGGHVTLVINTKNSG-LTFEVQDSG 522

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGE-GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
            G+   ++      F +   ++    + GTGLGL +AK +V  + GK  + S   +GT  
Sbjct: 523 AGIPEEDIPFLFDRFYKADKARTRGKKVGTGLGLAIAKNIVQGHDGKISVSSVVGEGTTF 582

Query: 805 EIIFP 809
            +  P
Sbjct: 583 SVYLP 587


>gi|1401270|gb|AAB08575.1| RcaE [Fremyella diplosiphon Fd33]
          Length = 655

 Score =  332 bits (852), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 90/428 (21%), Positives = 171/428 (39%), Gaps = 30/428 (7%)

Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450
           R  +     L   Q   + S+A++        +         ++ E       +  +   
Sbjct: 241 RQWVDFELELMQ-QLADQISIALSQAQLLGRLEEVVAARTAELQEEINVRMQAEAALRQS 299

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
             QL  I  A    IA ++ +      N+A     G   + I          ++    M 
Sbjct: 300 EEQLRLITNALPVLIAYVDEQQQYRFNNQAYQDWLGQSPQKIYGSHLRQVWGEDCYQRME 359

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQ 566
            Y+   LS    Q +        ++    ++ +              +     DIS+ K 
Sbjct: 360 VYVKTALSG---QAVNYENDIVLRDGSWRAVDVTYIPHLDDENMVKGFFALSSDISDRKA 416

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
            +                K +F++ +SHE+RTPLT++    +++   R G L      + 
Sbjct: 417 IE--------------RMKDEFISIISHELRTPLTSLHSALKILATGRLGTLSTEGQ-QM 461

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
               D S   ++ +VN++LD+ +IESGK+ +  +  +    + +A   +Q  A ++ + +
Sbjct: 462 LGIADDSTERLVRLVNNVLDLQRIESGKVIMECQACNAANLMIQAAEAMQAMAQQQEVTL 521

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN-----EEVILRV 741
                     + AD   + Q   N+LSNAI F+  GG + ++     N     +EV+ RV
Sbjct: 522 VKQ--PQDISVWADADYILQALTNLLSNAIKFSSPGGTVWLTVEQEKNSSNNPKEVVFRV 579

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
           RD G G+   +LE+  + F Q+ +S   +  GTGLGL + + +++ + G+ +  STP  G
Sbjct: 580 RDEGQGIPADQLERIFERFQQVDSSDSRKKGGTGLGLTICRKIIEQHNGRIWAESTPGCG 639

Query: 802 TLIEIIFP 809
           +      P
Sbjct: 640 STFAFTLP 647


>gi|284035961|ref|YP_003385891.1| multi-sensor signal transduction histidine kinase [Spirosoma linguale
            DSM 74]
 gi|283815254|gb|ADB37092.1| multi-sensor signal transduction histidine kinase [Spirosoma linguale
            DSM 74]
          Length = 1406

 Score =  332 bits (851), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 131/812 (16%), Positives = 251/812 (30%), Gaps = 63/812 (7%)

Query: 47   DSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIP--RTVRFTWNIDAHGYLKEISEELPK 104
            ++ EQ   ++   E        + +  F                 DA G ++ ++  L  
Sbjct: 616  ETEEQLRQSNAELEKRVAARTGEIQQLFAMQQAVFKHAGLAITATDAQGVIQLVNPALES 675

Query: 105  TIGNYAFKMIG----MRLCD----------VSDILHIDP--NNHIGDLLKRQNTWYGKTT 148
              G  A ++IG      L D          ++  L  D     H+ + +++ +    +  
Sbjct: 676  LTGYTADELIGKVTPRALRDPVFHQNLLQKLAPDLVDDGTGEEHVIEYIRKNDFLRRENV 735

Query: 149  LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR-ALGKRLDKKFSHL 207
            L   +G  + V   ++ L  Y  N    GF    IV            L +   +     
Sbjct: 736  LLTKQGQRIPVLSTVSGL--YDDNNVLIGF--VDIVADISYLKTIEHKLMQANQRSRLAT 791

Query: 208  HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV----SSLTEYYAHKDDVLK-------- 255
               K G         +I   ++      +            E   H DD+          
Sbjct: 792  MAGKLGVWEWNLLTNEIMMDENFLVLFGLPENASIKRIEDLEQIVHPDDLAYFKQNVQNI 851

Query: 256  -TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
               + P         P  +  H +  +    +   G                        
Sbjct: 852  IESQKPFDVEFRVFFPSTKTTHYLKADGLIVQNEDGINNRLIGVIR---DRTKKRQADQA 908

Query: 315  FDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
                E      VD      F + + G L Y NP +  +T +   + +     L  +    
Sbjct: 909  LKISEKRYRSLVDHLKDIVFQIDTSGCLTYLNPVWQKITGFSLEETL-GKPFLDFVFPDD 967

Query: 374  KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
            +  +      ++  +      A    +            +        N+  E     G 
Sbjct: 968  RERNQYLCDQLICRQK-----AICQHVVRYIHKDGGYRWIDVFAQLTVNELDEVTGITGT 1022

Query: 434  EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDI 492
              +  + +  +  +     +   I E   +   I +  E   +  N A  K  G   E +
Sbjct: 1023 FTDITERKKAEDALLESEQRFRDIAENVDEIFWIRDLLEPKFIYINPAYEKFTGQLAETL 1082

Query: 493  LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
               P                   +   +   T +       K+  L  L + + ++    
Sbjct: 1083 YENPLVFLNFILEEDRSKVLANFVDEANQDSTFQF--RARHKDGSLRHLDVRLFRVVNEE 1140

Query: 553  CY----SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                       DI+   +++  L  +       ++ KS F++  SHE RTPL AI    E
Sbjct: 1141 GVLIRRIGMATDITTAIEKELILEESLTKERTLNALKSQFISTASHEFRTPLAAINSSVE 1200

Query: 609  VIKNQ-RFGPLGNPRYI---EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
            ++K+    G    P      ++   I +    + D++ D L ISKI+ G++ ++ E   L
Sbjct: 1201 LVKHYVNVGSADTPMTKVINQHIEKICQKVFFLNDLITDTLTISKIDEGRITVNLELTDL 1260

Query: 665  DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724
             E     +        + R  +   +  N   +  D +  + I  N+LSNA  F+    +
Sbjct: 1261 IELYENTVKHYFSDREDNRF-VEFEYIGNPVTVNLDRKLTEHILTNLLSNAFKFSNKNPR 1319

Query: 725  IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
            + IS        V++ +RD G+G+   ++      F +  N      +GTGLGL + +  
Sbjct: 1320 LTISFCTEE---VMMTIRDEGIGIPEKDIANLFGKFFRASNVTG--FQGTGLGLAICQEY 1374

Query: 785  VDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
            +    G+    S    GT  ++ FP      P
Sbjct: 1375 ITLQNGRITCESREGVGTSFKVYFPFSANEQP 1406



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 26/179 (14%), Positives = 62/179 (34%), Gaps = 15/179 (8%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRK--MEIEVMQLCSILEATSDGIAIINR---EG 472
                +   +     +  E+V+ ++ ++   +      L +I++ T   +A       +G
Sbjct: 463 HILIAREVADQLSIVLLQEEVNRQLGEQAGKLHENNQLLQAIIDHTPAVLAFWEPVRIDG 522

Query: 473 IILST-----NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
            I+       N   S + GY  E+++             + +     E+      Q  + 
Sbjct: 523 RIVDFKYLLSNPVNSAVTGYSHEELMHSTLVTLFPFTRDNGIFSRAVEVAETGNSQQFQL 582

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
                T +   L     + ++       LT+ DIS  K+ + +L  +    EK  + ++
Sbjct: 583 KYRLKTGD---LWGEYSLVRV--GGNVLLTIKDISHLKETEEQLRQSNAELEKRVAART 636


>gi|163795280|ref|ZP_02189247.1| Sensor protein gacS [alpha proteobacterium BAL199]
 gi|159179266|gb|EDP63797.1| Sensor protein gacS [alpha proteobacterium BAL199]
          Length = 727

 Score =  332 bits (851), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 134/593 (22%), Positives = 239/593 (40%), Gaps = 31/593 (5%)

Query: 227 QQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKK 286
            +   P  R+  +  ++        ++L        +S +        F  ++       
Sbjct: 137 WRDTAPDERVLRRTMAVVLVIWAAQELLSAT-IGWHSSTDPLW-----FTAVHGYGVALA 190

Query: 287 QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYAN 345
                     + +    +        A  +       +        F+    G    Y +
Sbjct: 191 LLLIVAALRRRHAQALEAIDQAQRARADVEHASQRLSDFASVSSDWFWEQDAGLRFTYLS 250

Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN-AIKPVMLYRSDRTCIAASARLHTIQ 404
           PS   + ++ S+      G   +      +SD   A     L R +        R + I 
Sbjct: 251 PS---VWQHSSLTPENHYGKTRSETQPRGVSDEEWAAHEATLQRREPFK---DFRFYRIG 304

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
            +      ++       ++        G+  +  D    ++++     QL   L+A S+G
Sbjct: 305 ADGRR-RCLSISGVPVFDEQGLFQGYRGVGKDLTDLITAEQRVRATNTQLAQALDARSEG 363

Query: 465 IAIINREGIILSTNRAVSKLFG---------YPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           +A  +R+  ++  N+A     G            ED +R               + +L E
Sbjct: 364 LAFWDRDDRLVMCNQAYRDQSGKSGSTLVPGISYEDYIRAGIEAGEVPAAVGREDAWLQE 423

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575
            L +              +      L I  ++ P      LT  DISE K+ ++ L  A 
Sbjct: 424 RLEVRRNLPYTVEIFRGDR-----WLLIREQRTPD-GGTLLTATDISELKRREDALVKAV 477

Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
           + A+  +  K  FLA +SHE+RTPL AIIGF+E+IK+ +     +    EYA YI  SG 
Sbjct: 478 EQAQLANRAKMAFLATMSHELRTPLNAIIGFAEIIKSGQIAS-NSDVQGEYAGYIHESGA 536

Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695
            +L ++NDLLD+S+IE+G++ L  +P  L   + E   +++  A    + +  +  +   
Sbjct: 537 HLLAVINDLLDVSRIEAGRLVLDEKPFGLASLIDECDRMIRQKAEADGLRLAMATVDPGL 596

Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755
            I  D R+ KQI +N+LSNA+ FT SGG + ++    +   + + VRDTG+G+    + +
Sbjct: 597 GIHGDRRAFKQILINLLSNAVKFTESGGAVTLTAERDAGGRLRMVVRDTGIGVEANRVVE 656

Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
             +PF Q+ N    R  GTGLGL + K +V+A+ G     ST  +G+ + I  
Sbjct: 657 LFEPFRQLENVHARRHHGTGLGLYITKNLVEAHGGSIVFESTVHEGSTVTITL 709



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/249 (8%), Positives = 63/249 (25%), Gaps = 6/249 (2%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL-LKRQNTWYG 145
           W  DA      +S  + +          G    +       D      +  L+R+  +  
Sbjct: 238 WEQDAGLRFTYLSPSVWQHSSLTPENHYGKTRSETQPRGVSDEEWAAHEATLQRREPFKD 297

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
               + I        + ++ +P++     F G+RG G               +  + + +
Sbjct: 298 F-RFYRIGADGRRRCLSISGVPVFDEQGLFQGYRGVG--KDLTDLITAEQRVRATNTQLA 354

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
              + +    +       +            K+  + +             E   +  + 
Sbjct: 355 QALDARSEGLAFWDRDDRLVMCNQAYRDQSGKSGSTLVPGISYEDYIRAGIEAGEVPAAV 414

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS--AYFDEGENLTP 323
                  ++   +  N     + F   +                + +  +     E+   
Sbjct: 415 GREDAWLQERLEVRRNLPYTVEIFRGDRWLLIREQRTPDGGTLLTATDISELKRREDALV 474

Query: 324 ETVDKCPIP 332
           + V++  + 
Sbjct: 475 KAVEQAQLA 483


>gi|219847586|ref|YP_002462019.1| PAS/PAC sensor hybrid histidine kinase [Chloroflexus aggregans DSM
           9485]
 gi|219541845|gb|ACL23583.1| PAS/PAC sensor hybrid histidine kinase [Chloroflexus aggregans DSM
           9485]
          Length = 944

 Score =  332 bits (851), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 96/426 (22%), Positives = 190/426 (44%), Gaps = 31/426 (7%)

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM----EIEVMQLCSILEATS 462
              +  +  IP+  ++          I    +   +   ++    +IE+ +  +++E T+
Sbjct: 288 GWQAGVVQLIPWPGSSFNERQWQWLRILVRQIGIAVEHARLFEQLQIELDRAQAVVETTN 347

Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH-----YLTEIL 517
           DGI +++R+  ++  NR     FG    DI  K +   L   +    N      +L ++L
Sbjct: 348 DGIVVLDRQRRVVIINRRACYFFGITEADIKEKSYDDLLLVFSRVFANSVRLGFWLGQLL 407

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIK-KLPFSSCYSLTMHDISEWKQEKNKLSHAKK 576
             +  +  E+  +   K  +L      +  +        L   D++  ++ +        
Sbjct: 408 GSETDRGWEEFQVVYPKSRRLHCFSAPVINRREQYLGRILIFRDVTREREIE-------- 459

Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR------FGPLGNPRYIEYANYI 630
                   K +F++ VSHE+RTPL++I G  +++           G    P+        
Sbjct: 460 ------RLKDEFISIVSHELRTPLSSIQGSLQLVLGDDERGKTGLGDRLPPQVRTMLQIS 513

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
             +   ++ +VND+LD++KIE GK+ L  +PVS       A+  +  +A +  + I    
Sbjct: 514 LNNTQRLIRLVNDILDVNKIEQGKLQLQRKPVSPLAICRSAVEELTSFARQHGVTIALDV 573

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
             N+P + AD   + Q+ +N+LSNAI F+  G ++++S  + ++  V   VRD G G+ +
Sbjct: 574 PPNLPFVDADQDRIVQVVVNLLSNAIKFSSKGQRVLLSVVYETS-VVRFSVRDWGPGIPH 632

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            + +   + F Q+  +      GTGLGL ++K +V+ + GK ++ S P +G++     PL
Sbjct: 633 TDQQFLFQKFRQLNQANNRERSGTGLGLAISKELVELHGGKIWVQSEPGQGSIFNFTLPL 692

Query: 811 YDTSHP 816
                P
Sbjct: 693 AKVQPP 698


>gi|238894393|ref|YP_002919127.1| hypothetical protein KP1_2376 [Klebsiella pneumoniae NTUH-K2044]
 gi|238546709|dbj|BAH63060.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 897

 Score =  332 bits (851), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 100/501 (19%), Positives = 173/501 (34%), Gaps = 35/501 (6%)

Query: 326 VDKCPIPFFVYSH-GNLFYANPS--------FLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
           ++  P    +Y     L   N             L    S++ +      +     P   
Sbjct: 9   LNLLPSAVMIYDERERLQAWNDKVALFYPTIAPWLAVGASLESLAEKFIDAGYNIDPGRQ 68

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
                  +   R    C         ++ +    + +                   +  +
Sbjct: 69  QTLREAIIRNCRQTNHC--------EVRQSGNRRIYVQHQRLADG-------GIVSLHTD 113

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR-K 495
             +    +R             E+   GI      G  L  N  +  + G          
Sbjct: 114 ITELDEARRSRHQLHDDFLFTAESIQIGIWDWQVSGDSLQVNDTLLAMVGQSRAQWRFPL 173

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR-----IIIKKLPF 550
            F + L                  +     E         +    +      + +     
Sbjct: 174 RFMLNLVHEDDRATLQQAMIASQNEHMPVFECELRVQHPTQGWRWMLLSGQIVTLNMQQQ 233

Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
           +     T+ DI+  K  +     A K A + +  KS FLA +SHEIRTP+  I+G +++ 
Sbjct: 234 AERVIGTLQDITRRKAAELLAIEAAKEAREANEAKSAFLANMSHEIRTPMNGILGMTQLC 293

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
            +            EY + +  S   +L I+ND+LD S+IESGKM +  EP+ +   V  
Sbjct: 294 LDTPLTA----EQREYLSLVMSSAQSLLHIINDILDFSRIESGKMQVDVEPLEIRPFVQS 349

Query: 671 AISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
            I      A+EK I +    +  +P +L  D   ++QI  N+L NA+ FT  G  ++   
Sbjct: 350 LIRPHMPAASEKGIELLVDISPAVPEVLIVDGPRLRQILTNLLGNALKFTHQGEVLLAIA 409

Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
               +     R+RDTG+G+   + +   + F Q  +S   R  GTGLGL ++  +V    
Sbjct: 410 PAEDDNRWRFRIRDTGIGIAPEKQKAIFEAFSQADSSTTRRYGGTGLGLTISARLVSLMG 469

Query: 790 GKFYIFSTPAKGTLIEIIFPL 810
           G+  + S P  G+      PL
Sbjct: 470 GELTVESQPGAGSEFAFTLPL 490


>gi|302185533|ref|ZP_07262206.1| PAS [Pseudomonas syringae pv. syringae 642]
          Length = 1187

 Score =  332 bits (851), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 124/754 (16%), Positives = 260/754 (34%), Gaps = 54/754 (7%)

Query: 75  VFDPIPRTVRFTWNI-DAHGYLK-EISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH 132
            F+     V F++ + D    L   I+  L     +   +++G         L  D    
Sbjct: 217 KFESRLPPVGFSFAVRDDERRLLALINRALDSIAPSTGREVLGR-WTM---GLGADVEGQ 272

Query: 133 IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIY---SRNREFSGFRGFGIVHVNRV 189
              L   +  W     L     T   V       P Y     N  + G     +  ++R+
Sbjct: 273 RIRLTSAERGW----LLKHPSVTIATVQH-----PPYIYKDNNGHWVGLNADVLSRISRM 323

Query: 190 DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH 249
               + + + L      +  ++ G   +     +   ++     L         +  +  
Sbjct: 324 -TGLQFVHQELPSTQQAIDVLRAGQFDMNTTLAENTERRR---FLDFTYSFGGNSWMFVV 379

Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
           + D         L+ +  +LP +            ++++            +  +     
Sbjct: 380 RSDQSSHISLDSLSGKVLALPARHAL-----EDMIRREHPTIQLRLVDTYDQARALVESG 434

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
           +  A                 +  +++  G L  A  S            I+    L  +
Sbjct: 435 AADATIQNE------------VGAYLFPSGRLKVA-RSVEGQWSPDRFSVIKTQPELLGI 481

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
           L+        A    +  R   + +          W R        +             
Sbjct: 482 LNKALEEFPVAELRSIRMRWLGSALP-----QPSLWGRIPQWVFWVVSLALLAGLVSLAW 536

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
            + ++ +    +  +R++  ++    ++L+   + I + + +G ++S NR+  +  G   
Sbjct: 537 SSRLKVQIRQRQKAQRQLNDQLAFKHALLDGIPNPIYVRDLKGRLISCNRSYEQSLGISF 596

Query: 490 EDILRKPFT--VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
           E +  +  T    + +     M+     +L        ++      K   +    +    
Sbjct: 597 EQMNGRRLTDVNLIPRALAEQMHTDYLNLLKDHQPVFSDRTLELPGKRMDVWQWTVPFFA 656

Query: 548 LPFS-SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
                        DI+E KQ + +L +A ++A + +  KS FLA +SHEIRTP+ AIIG 
Sbjct: 657 ADGQLQGLLGGWIDITERKQLEQQLQNAVRMAAQANEAKSAFLASMSHEIRTPMGAIIGL 716

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
            E    +                  RS   ++ ++ + LD+++IE+G + L      L +
Sbjct: 717 LE--LEREHTLRRGETPSHGLQVAHRSATELVALIGESLDLARIEAGSLQLSLAITPLHD 774

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQI 725
                I L    A EK + +R  F+         D   ++Q+  N+L NA+ FT  G  +
Sbjct: 775 LFDGVIELFSAQAREKSVELRMEFSAQARGDYWLDPMRLRQVLHNVLGNALKFTRQGAVV 834

Query: 726 I---ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
           +   +++  + +  V + ++D+G G+     +   +PF Q  +       G+GLGL + +
Sbjct: 835 VKVDVTSESSGSTRVRISIQDSGEGIEPERQQHVFQPFTQASDDTAAHYGGSGLGLSITR 894

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
            +V+   G   + S P +GTL+ +  PL   + P
Sbjct: 895 QLVELMKGDISLHSEPGQGTLVTVDLPLTRLNEP 928


>gi|227891714|ref|ZP_04009519.1| two-component sensor kinase yycG [Lactobacillus salivarius ATCC
           11741]
 gi|227866517|gb|EEJ73938.1| two-component sensor kinase yycG [Lactobacillus salivarius ATCC
           11741]
 gi|300213969|gb|ADJ78385.1| Sensor protein [Lactobacillus salivarius CECT 5713]
          Length = 627

 Score =  332 bits (851), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 85/399 (21%), Positives = 166/399 (41%), Gaps = 36/399 (9%)

Query: 423 QFPENMPQNGIEPEDVDTRINKRKM-EIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
              E                  +++ E E  +L S+L   SDG+   +R G I   N   
Sbjct: 240 GNDELGQLAQAVNNLSIRVEETQELSESERRRLDSVLSHMSDGVIATDRRGGITIVNDMA 299

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
                    ++L K     L+      +   L +   + L  + EK  + +         
Sbjct: 300 MNYLDISEGEVLGKSILDILDIRNQYTLRDLLEKQDEVVLDMSGEKDLILNA------YF 353

Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
            +I ++  F S     +HD++E ++                  +  F++ VSHE+RTPLT
Sbjct: 354 SVIQRESGFISGIVCVLHDVTEQQKI--------------DRERKQFVSNVSHELRTPLT 399

Query: 602 AIIGFSEVIKNQRFGPLGNPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
           ++  + E + +   G   + +   E+        + ++ ++NDLL +S+++SG + L  E
Sbjct: 400 SMRSYIEALND---GAWRDEKVAPEFLKVTQDETDRMIRMINDLLSLSRMDSGTVKLDLE 456

Query: 661 PVSLDEAVSEAISLVQLYANEKRI----------LIRTSFANNIPRILADLRSVKQIALN 710
            V+++  V+  +    +   + +I           I+  F      +  D     Q+  N
Sbjct: 457 LVNINGLVNYILDRFDMMLKKDKIDTRDIKTKNYTIKRDFTKRDLWVELDTDKFIQVVDN 516

Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           I++NAI ++P GG I       ++  VIL + D G+G+   +L      F ++  ++   
Sbjct: 517 IMNNAIKYSPDGGVITCRL-LETHNNVILSISDQGLGIPKKDLGHVFDRFFRVDKARSRA 575

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             GTGLGL ++K +++ + G+ ++ S   KG+   I  P
Sbjct: 576 QGGTGLGLAISKEVIELHHGRIWVDSVEGKGSTFYISLP 614


>gi|298247019|ref|ZP_06970824.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297549678|gb|EFH83544.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 648

 Score =  332 bits (851), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 90/622 (14%), Positives = 200/622 (32%), Gaps = 45/622 (7%)

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPP-----PHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
              +       + +    +                 +     L   +      +      
Sbjct: 44  AAIDALPQCVWLIRPDGSVAYTNKRWRDYTGTSTEQEQGDGWLQYTHPDDRQRVLLVWQN 103

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
            + + E    E                   + +++      Y+            ++   
Sbjct: 104 AVQTGEPYEAELRLRQGTTGAYRWFLLQATSHKDSQGTILNYVGTCADIEGQKRAEQQLK 163

Query: 321 LTPE----TVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
            + E      +  P   +  S   L  Y N  +   T       +   G   +    P  
Sbjct: 164 ESRENWRVLAETVPQLVWTTSSDGLVEYWNRQWYDYTGSSPEQAL---GDGWSQFLHPD- 219

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
                     L    +            +                 +   + +   G   
Sbjct: 220 -----EYQHTLMVWHQALETGEPYERLKEGQTGGYRWFLVRAMPVRDDTRQIVKWFGTCT 274

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
           +  D +  +  + +   ++  ++ ++  GI +   +  I+  N    ++ GY  ED+ ++
Sbjct: 275 DIDDQKRTEEALRLSQERVNLLMNSSIIGIFLA-EDDAIVDANATFLQMTGYRREDLQQR 333

Query: 496 PFTV--FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-- 551
                        S  +    ++++       E   +   K+   L + +          
Sbjct: 334 NVRWATMTRPPAASFSHQVYQDVVAQHCTTPFETELVC--KDGSHLPVLLGGVAFHDQVL 391

Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
                 + D S  +              +    K  FL   SHE++TPL ++   ++ + 
Sbjct: 392 QGVGFVL-DNSARQ--------------ELDQRKDAFLGMASHELKTPLASLKLQTQ-LL 435

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
            ++ G             ++   N +  +V++LLD+S+I++GK+    E V LD  + E 
Sbjct: 436 CKKLGKQDLSNVEVVCARMEGQLNAITRLVDELLDLSRIQAGKLEYAHEMVDLDAMLKEV 495

Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
           + ++Q       I+++ +       ++ D   + Q+ LN+LSNAI + P   QI ++ T 
Sbjct: 496 MDVLQHIQTTHTIVVQHAAPP--VFVVGDRDRLAQVFLNVLSNAIKYAPDAPQIEVTLTT 553

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
           ++   V + +RD G+G+      +  + F +    QQ    G G+GL +   +V  + G 
Sbjct: 554 SAEA-VTISIRDQGIGIPRELQGRIFERFYRAVPLQQRAFPGLGMGLYIVSEIVKHHGGT 612

Query: 792 FYIFSTPAKGTLIEIIFPLYDT 813
             + S   KG+   I FPL  +
Sbjct: 613 IRVESERGKGSTFHITFPLAAS 634



 Score =  103 bits (258), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 33/383 (8%), Positives = 86/383 (22%), Gaps = 14/383 (3%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD-LLKRQNTWY 144
            W I   G +   ++      G    +  G      +          +    ++    + 
Sbjct: 53  VWLIRPDGSVAYTNKRWRDYTGTSTEQEQGDGWLQYTHPDDRQRVLLVWQNAVQTGEPYE 112

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            +        T  Y    L A            +   G               K   + +
Sbjct: 113 AE-LRLRQGTTGAYRWFLLQATSHKDSQGTILNY--VGTCADIEGQKRAEQQLKESRENW 169

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
             L E              +                +            D  +       
Sbjct: 170 RVLAETVPQLVWTTSSDGLVEYWNRQWYDYTGSSPEQALGDGWSQFLHPDEYQHTLMVWH 229

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
            + E+  P +                   +++++++  ++             +E   L+
Sbjct: 230 QALETGEPYERLKEGQTGGYRWFLVRAMPVRDDTRQIVKWFGTCTDIDDQKRTEEALRLS 289

Query: 323 PETVDKCP----IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
            E V+       I  F+     +  AN +FL +T Y+  +D++        +  P  +  
Sbjct: 290 QERVNLLMNSSIIGIFLAEDDAIVDANATFLQMTGYRR-EDLQQRNVRWATMTRPPAASF 348

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
           +      +             L  +  +  +   +                         
Sbjct: 349 SHQVYQDVVAQH-CTTPFETEL--VCKDGSHLPVLLGGVAFHDQVLQGVGFVLDNSARQE 405

Query: 439 DTRINKRKMEIEVMQLCSILEAT 461
             +     + +   +L + L + 
Sbjct: 406 LDQRKDAFLGMASHELKTPLASL 428



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 15/143 (10%), Positives = 38/143 (26%), Gaps = 7/143 (4%)

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
            +  + ++A    + +I  +G +  TN+      G   E      +  +   +    +  
Sbjct: 40  EEWHAAIDALPQCVWLIRPDGSVAYTNKRWRDYTGTSTEQEQGDGWLQYTHPDDRQRVLL 99

Query: 512 YLTEILSLDLRQTLEKITLGSTK-EEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQ 566
                +        E                 +       S      Y  T  DI   K+
Sbjct: 100 VWQNAVQTGEP--YEAELRLRQGTTGAYRWFLLQATSHKDSQGTILNYVGTCADIEGQKR 157

Query: 567 EKNKLSHAKKIAEKESSHKSDFL 589
            + +L  +++     +      +
Sbjct: 158 AEQQLKESRENWRVLAETVPQLV 180


>gi|150017373|ref|YP_001309627.1| multi-sensor hybrid histidine kinase [Clostridium beijerinckii
           NCIMB 8052]
 gi|149903838|gb|ABR34671.1| multi-sensor hybrid histidine kinase [Clostridium beijerinckii
           NCIMB 8052]
          Length = 951

 Score =  332 bits (851), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 103/373 (27%), Positives = 174/373 (46%), Gaps = 14/373 (3%)

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           +L+  +  I  ++      + N A ++ FG    D+  K      + NT + ++    E+
Sbjct: 197 LLDNAASQIWALSNVTSYATVNEAHAEFFGKKKSDLEYKDLYDIFDINTANKLSENNWEL 256

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHA 574
              D     E        E++LL ++    K    +      T  DI+E +  + +L  A
Sbjct: 257 FRNDEPAEKEIKIKNWKGEDRLLQVKSKPIKDESGNIKYLVCTAQDITEQRIAEAELYKA 316

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
           K  AE  +  KS FLA +SHEIRTP+  I GF E++++            E+      + 
Sbjct: 317 KVEAESANIAKSQFLANMSHEIRTPMNGIFGFLELLESSNLSL----EQREFVREAKSAS 372

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
           +++L+I+ND+LD SKIE+ K+ L     +L   + +A+SL      EK I + T     I
Sbjct: 373 DILLNIINDILDFSKIEAKKLVLENISFNLRTVIEDAVSLFVPKTLEKGIQLYTIIDPTI 432

Query: 695 P-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-TSNEEV---ILRVRDTGVGMT 749
           P  ++ D   +KQI  N+LSN + FT +G +I I   +     E+      VRDTG+G++
Sbjct: 433 PDEVIGDPSRLKQILNNLLSNGVKFTDAG-EIAIKVDYFEEENEIALLTFEVRDTGIGIS 491

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE--II 807
             +++K  K F Q   S   +  GTGLGL + + +V+   G+  + S   KG+     + 
Sbjct: 492 GKDIQKLFKSFNQADASTTRKYGGTGLGLSICRELVNMMDGEITVDSVLDKGSTFRFCVR 551

Query: 808 FPLYDTSHPHDCI 820
             +   +  H  I
Sbjct: 552 LKISKRASEHISI 564


>gi|209885750|ref|YP_002289607.1| histidine protein kinase DivJ [Oligotropha carboxidovorans OM5]
 gi|209873946|gb|ACI93742.1| histidine protein kinase DivJ [Oligotropha carboxidovorans OM5]
          Length = 601

 Score =  332 bits (851), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 116/379 (30%), Positives = 187/379 (49%), Gaps = 10/379 (2%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
             +KR + +E  +   +    SD IA     G +   + A   L G P   +LR      
Sbjct: 193 HTSKRLLTLEEGRYRLLARHMSDVIARHRANGDVNFISPAAEALLGVPGPLLLRHGLFDR 252

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGS--TKEEKLLSLRIIIKKLPFSS------ 552
           +           L++        ++E            + + + +  + L  +       
Sbjct: 253 VHVADRPRYLTALSDAARGGEECSVEFRVRRDSAVHGGEFIWVEMRCRPLEPTQDKASGA 312

Query: 553 -CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
                 M D++E K ++  L  A++ AE+  + KS FLA +SHE+RTPL AIIGFSE++ 
Sbjct: 313 CEVVSVMRDVTERKAQEEALEIARREAEEAGASKSRFLATMSHELRTPLNAIIGFSEMLT 372

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
           ++    +   R  EYA  I+ SG  +L +VN +LD+SK+ESGK  L  EP +  E ++ +
Sbjct: 373 HEDEMKIDAARRHEYAGLINESGLHLLSVVNGILDMSKMESGKFELVAEPFAPRETLASS 432

Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
            +L+ L A +K + +     +++P++  D R+ KQI LN+LSNAI FT  GG + +S   
Sbjct: 433 CNLMVLKARDKGVELVLRAPSDLPQMTGDARAFKQILLNLLSNAIKFTEEGGSVTVSAEV 492

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
            +  E+ LRV DTG+G+   +L    K F Q   S   R EGTGLGL + K +V  + G+
Sbjct: 493 -AGRELALRVTDTGIGIGKDDLAHLGKAFFQAGASYHGRREGTGLGLSIVKNLVALHGGE 551

Query: 792 FYIFSTPAKGTLIEIIFPL 810
             + S    GT + +  P+
Sbjct: 552 MRVDSEIDCGTTVSVRLPI 570


>gi|220903475|ref|YP_002478787.1| histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans
           str. ATCC 27774]
 gi|219867774|gb|ACL48109.1| histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans
           str. ATCC 27774]
          Length = 666

 Score =  332 bits (851), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 106/515 (20%), Positives = 194/515 (37%), Gaps = 23/515 (4%)

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYSHGN-----LFYANPSFLLLTKYKSVDDIEIAG 364
                FDE  +   E +    +  +  S+         + N +   L       D E   
Sbjct: 3   EARRIFDEELSWGREAMAAASVGLWAISYDTRTERTAMFTNEAMRRLLGVPEGLDPEACA 62

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
                    +                    +     +        ++ +       ++  
Sbjct: 63  AFWLRHVDSRDLPLIRDSLAAFK----DDASMREIRYAYCHPGMGAMHVRCGGRRVSSAD 118

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR-EGIILS-TNRAVS 482
              +   G   +  +       +   + +L         G+  + R  G      N    
Sbjct: 119 DPVLRITGFHQDISELHAAHNALRESLSRLSLACRLGWLGVFELGRKNGRPEFSCNEVFY 178

Query: 483 KLFGYPVEDILRKPFT----VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
           + FG        +         L ++     N    E  +L  ++ +E       +    
Sbjct: 179 EQFGLRESADAAERLVAVEKCILPEDRHRWRNLCRAEGWTLGFQEHVELRVSHPWRGLCW 238

Query: 539 LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
             +   +         +  +HD+++ +Q +  L  AK+ AE  ++ KS FLA +SHEIRT
Sbjct: 239 FVVAYEVVGTQDEPRITGYVHDVTKQRQHECMLREAKESAEAANAAKSIFLANMSHEIRT 298

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
           P+  I+G + ++ N    P    +  +Y   I  +   +LDI+NDLLD SKIE+  M+L 
Sbjct: 299 PMNGIMGMAHLVLNTDLSP----QQRDYVEKIHSTCESLLDIINDLLDFSKIEANHMDLE 354

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIH 717
             P      +   ++L++     K  ++ +    +IP+ ++ D   ++QI LN+  NAI 
Sbjct: 355 ALPFQPVNEMEAVLALLRPRTQHKNCVLESHIDPDIPQTLVGDALRLRQILLNLGGNAIK 414

Query: 718 FTPSGG-QIIISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           F+  G  ++ +   H     V L   V D G+GM+  E E+   PF Q   S   R  GT
Sbjct: 415 FSERGVVRVDLQLLHREGNSVTLACLVSDEGIGMSEEEQERIFTPFSQADTSITRRFGGT 474

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GLGL L + +V+   G+ ++ S P KG++  +  P
Sbjct: 475 GLGLALCRRLVELMGGRIHVQSAPGKGSVFRVELP 509


>gi|16329960|ref|NP_440688.1| sensory transduction histidine kinase [Synechocystis sp. PCC 6803]
 gi|1652446|dbj|BAA17368.1| sensory transduction histidine kinase [Synechocystis sp. PCC 6803]
 gi|1747498|gb|AAB39105.1| phytochrome/histidine kinase like [Synechocystis sp. PCC 6803]
          Length = 1371

 Score =  332 bits (851), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 112/817 (13%), Positives = 252/817 (30%), Gaps = 107/817 (13%)

Query: 85   FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL-LKRQNTW 143
              W + + G + E ++      G    K++G       +    +         +  Q  +
Sbjct: 570  LVWRLSSAGDVWECNQRTLAYFGRRGRKILGNTWQQFIEPGERENVQRQWRQGIAAQEFF 629

Query: 144  YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR--------- 194
              +  LW  +G   Y    L  LP+  R    +G+             +           
Sbjct: 630  QLECRLWRSDG--QYRWHLLQVLPLEDRFGSINGW--LASSTDIDDLKEAEKALRNQAQQ 685

Query: 195  --------ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFS-QQSPPPHLRMKNKVSSLTE 245
                       +   K  + L                +    Q       +   V +   
Sbjct: 686  EKLLSSISQRIRESLKLETILRTTVTEVRRTIHADRVLIHHIQEDGLGTTIAESVVNGQP 745

Query: 246  YYAHKDDV------------------LKTEKYPLLTSEES-------------------- 267
                 D                       ++ P      +                    
Sbjct: 746  SVMQMDLSPESFPPECYQRYLNGYIYASRDQLPDCAINCAVQCFTVAESQSRIVAPIVFD 805

Query: 268  -SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN-HPSLSAYFDEGENLTPET 325
             SL      H  + ++  +      +Q+   +    +     +  L     E +    + 
Sbjct: 806  HSLWGLLIVHQCSSSRTWQTAEIQLMQSLGNQLAIAIQQSLLYERLQEELSERQRAEQKL 865

Query: 326  VD--KCPIPFFV---------YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
            ++  +     F             G +   N +   +  Y + + I     L  +    +
Sbjct: 866  LEVNQLQKGIFDVANYMIISTDRRGIISTFNRTAEEILGYTAAELIGQQTPL--IFHDQE 923

Query: 375  LSDNNAIKPVMLYRSDRTCIAASA------------RLHTIQWNRENSLAMTFIPFEKAN 422
               + A++     +      +               R  T      + L +        +
Sbjct: 924  EMASEAVQLSQQLQQTIRPNSIDMFAIPAIQWGVYEREWTYITKTGDRLPVYVSITALRD 983

Query: 423  QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
               +     G+  +       ++++E E   L  +++ +++ I I + E  +   N+A  
Sbjct: 984  DQGKVDGLVGVITDL----RRQKQIERERQNLDFVVKNSTELIVITDLEQKVTFLNQAGQ 1039

Query: 483  KLFGYPVEDILRKPF--TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL-L 539
             L G    +  +  +       +         + ++         E        +  + +
Sbjct: 1040 SLIGLENPETAQTTYLSEHISPEYLNFWQMEIIPQVFRSGA---WEGEFSLQHYQTAVEI 1096

Query: 540  SLRIIIKKLPFSSC-----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
             +   +  L   +          +HDI+  K  + ++  A +  ++    +S F++  SH
Sbjct: 1097 PVTASVFLLQGVNGQHPANLVAIVHDITHIKNAEKRILAALEAEKELGELRSRFISTTSH 1156

Query: 595  EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
            E RTPL AII  S  I  + +  L   R  ++   I+ S + ++++++D+L I++ E+  
Sbjct: 1157 EFRTPL-AIISSSTGILKKYWPKLDGQRRGQHLERIEESVHHMVELLDDVLTINRAETKY 1215

Query: 655  MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714
            +    +P+ L          +Q       +L           +  D + ++QI  N+L N
Sbjct: 1216 LPFEPQPLDLVSFCRGITDELQSSTEYHGLLFSYDGLGPGEIVAFDPKLLRQILTNLLGN 1275

Query: 715  AIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
            AI ++PSG  +        +  +   V+D G+G+   ++      F +   +      GT
Sbjct: 1276 AIKYSPSGQPVEFHLQRRGDVGI-FSVQDHGIGIGPEDIPNLFDSFYR--GTNVGSIPGT 1332

Query: 775  GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
            GLGLP+ K   + + G   + S   +G+  E+  PL+
Sbjct: 1333 GLGLPIVKKCAELHGGMITVTSQLGQGSRFEVELPLW 1369



 Score = 91.6 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 47/376 (12%), Positives = 104/376 (27%), Gaps = 45/376 (11%)

Query: 230 PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYF 289
           P P +    +   L        + L   +            +        + + +  +  
Sbjct: 365 PNPMVETDPRQDLLLPPRYFGLEELAALQAHEKKEFNFEFTDGGQSVHYFVVEISAFEID 424

Query: 290 GTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSF 348
           G+ Q +                 A     E      V+       +  +   + YANP  
Sbjct: 425 GSGQTSKILCLAQDVSHG-KRAEAALHTKEQQLQTLVNTIADGIVILDNHDKVIYANPMA 483

Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
             +      + ++   GLS          N     + +  S         +   I W  E
Sbjct: 484 CQMFGLSKEEFLQSQLGLS----------NRGQTEIGINVSPEEEGIGEIKAVPIHWQGE 533

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468
           +   +T                     +  D +   +K+        S+LEA  + +  +
Sbjct: 534 DCRLVTVR-------------------DVTDRQRVLKKLRDSEQIHRSLLEALPNLVWRL 574

Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528
           +  G +   N+     FG     IL   +  F+E      +     + ++   ++  +  
Sbjct: 575 SSAGDVWECNQRTLAYFGRRGRKILGNTWQQFIEPGERENVQRQWRQGIA--AQEFFQLE 632

Query: 529 TLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
                 + +     + +  L       + +  +  DI + K+ +  L        +    
Sbjct: 633 CRLWRSDGQYRWHLLQVLPLEDRFGSINGWLASSTDIDDLKEAEKALR------NQAQQE 686

Query: 585 KSDFLARVSHEIRTPL 600
           K   L+ +S  IR  L
Sbjct: 687 K--LLSSISQRIRESL 700



 Score = 80.8 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 41/327 (12%), Positives = 96/327 (29%), Gaps = 33/327 (10%)

Query: 274 DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS-LSAYFDEGENLTPETVDKCPIP 332
                 L           LQ   +                      ++L  + + + P  
Sbjct: 275 VGPQQWLATVQPDVLLEALQREVEMPRIVQHLEARIVWQQQQQQRNQHLIQKLLSRNPNL 334

Query: 333 FFVYSH--GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN--NAIKPVMLYR 388
            ++Y      + Y N    LL        I      +       L        +   L  
Sbjct: 335 IYLYDLVKNEIVYLNIPGSLLEGGSGGAPIPNPMVETDPRQDLLLPPRYFGLEELAALQA 394

Query: 389 SDRTCIAASARLHTIQWNRENSLA--MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
            ++              +   S+   +  I   + +   +      +  +    +  +  
Sbjct: 395 HEKKEFNFEFT------DGGQSVHYFVVEISAFEIDGSGQTSKILCLAQDVSHGKRAEAA 448

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
           +  +  QL +++   +DGI I++    ++  N    ++FG   E+               
Sbjct: 449 LHTKEQQLQTLVNTIADGIVILDNHDKVIYANPMACQMFGLSKEE--------------- 493

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQ 566
                +L   L L  R   E     S +EE +  ++ +        C  +T+ D+++ ++
Sbjct: 494 -----FLQSQLGLSNRGQTEIGINVSPEEEGIGEIKAVPIHWQGEDCRLVTVRDVTDRQR 548

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVS 593
              KL  +++I         + + R+S
Sbjct: 549 VLKKLRDSEQIHRSLLEALPNLVWRLS 575



 Score = 46.2 bits (108), Expect = 0.024,   Method: Composition-based stats.
 Identities = 28/305 (9%), Positives = 75/305 (24%), Gaps = 49/305 (16%)

Query: 24  DLSKKKIDNGFETEK--SKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPR 81
           ++S  +ID   +T K     ++  H    ++    + Q+  +  N +             
Sbjct: 417 EISAFEIDGSGQTSKILCLAQDVSHGKRAEAALHTKEQQLQTLVNTIADGIVI------- 469

Query: 82  TVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN 141
                  +D H  +   +    +  G    + +  +L                 L  R  
Sbjct: 470 -------LDNHDKVIYANPMACQMFGLSKEEFLQSQLG----------------LSNRGQ 506

Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIY--SRNREFSGFRGFGIVHVNRVDNDPRALGKR 199
           T  G       EG       ++ A+PI+    +           V             + 
Sbjct: 507 TEIGINVSPEEEGIG-----EIKAVPIHWQGEDCRLV------TVRDVTDRQRVLKKLRD 555

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQS---PPPHLRMKNKVSSLTEYYAHKDDVLKT 256
            ++    L E             D++            R +  + +  + +    +    
Sbjct: 556 SEQIHRSLLEALPNLVWRLSSAGDVWECNQRTLAYFGRRGRKILGNTWQQFIEPGERENV 615

Query: 257 EKY-PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
           ++      + +     +      +            L++       +L+           
Sbjct: 616 QRQWRQGIAAQEFFQLECRLWRSDGQYRWHLLQVLPLEDRFGSINGWLASSTDIDDLKEA 675

Query: 316 DEGEN 320
           ++   
Sbjct: 676 EKALR 680


>gi|163850140|ref|YP_001638183.1| PAS sensor protein [Methylobacterium extorquens PA1]
 gi|163661745|gb|ABY29112.1| PAS sensor protein [Methylobacterium extorquens PA1]
          Length = 648

 Score =  332 bits (851), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 115/581 (19%), Positives = 210/581 (36%), Gaps = 18/581 (3%)

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
           V       A   D             E S+  + +         ++      +       
Sbjct: 5   VLRKDGTLASLFDSRLAGLVHASALAEPSVRFRHER-----FLISRLATGAVMMAGLPPY 59

Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDD 359
             +    +     A       L    V       +V    +        + L        
Sbjct: 60  LVWRGVPSGLEAIAIASLFLPLLAAVVLSRTGSLWVAHALSSLGLTGIVVCLAALTGGAS 119

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
              A  L  +     +S +          +     A +  L         +L        
Sbjct: 120 SAAAIWLVAVPLEAMVSGSRRATIAASVIA--VVGAFAIALSGYLPVGALALDWPNAIVM 177

Query: 420 KANQFPENMPQNGIEPEDVDTRIN-KRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
                           E +      + +M+    +   +L A  D +   +  G +L  +
Sbjct: 178 PVFAVTAIGHIAAQAMEHMRREGEWRARMQDNEARDRLLLSAIDDLVTWHDANGRVLEAS 237

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE-- 536
            + ++  G     +        +       +   ++++ +     T+             
Sbjct: 238 GSAARFVGAEASRLRGHGLLDRVHIGDRPALLQAISDVAAHGAPATVPFRLHLDAARGDG 297

Query: 537 -KLLSLRIIIKKLP------FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
            + +   +   ++         S       D+SE ++   +L  A+  AE+    K+ FL
Sbjct: 298 SRTIFAEMRAHRIEAGLAGANGSTVVAVTRDVSEHRRHAQELDRARAEAERADEVKTHFL 357

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
           A VSHE+RTPL AIIGFS+V+  +    L   R  EYA  I +SG  +LD+VN LLDIS+
Sbjct: 358 ATVSHELRTPLNAIIGFSDVLGGEGAMSLSPERSREYAGIIAQSGRHLLDVVNTLLDISR 417

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709
           I  G  +   EPV ++  +     L++L A+   I + ++       ++AD R+ +Q+ +
Sbjct: 418 IRGGHFDFQPEPVDVEALIRGCCDLMRLKADASGIALTSAPVPASCALVADARACRQMLI 477

Query: 710 NILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
           N++SNA+ FTP GG++ +         + + V D G+G+T  +L +   PF Q+      
Sbjct: 478 NLISNAVKFTPRGGRVEVMVR-RGGAYLDIVVSDDGIGITEADLPRLGDPFFQVGGGYGR 536

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             EGTGLGL + + +   + G   + S P KGT + +  PL
Sbjct: 537 SHEGTGLGLSVVRGLAGLHGGAVSVESAPGKGTAVTVTLPL 577



 Score = 41.6 bits (96), Expect = 0.58,   Method: Composition-based stats.
 Identities = 28/273 (10%), Positives = 66/273 (24%), Gaps = 16/273 (5%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           DA+G + E S    + +G  A ++ G  L D   I            +            
Sbjct: 228 DANGRVLEASGSAARFVGAEASRLRGHGLLDRVHIGDRPALLQAISDVAAHGAPATVPFR 287

Query: 150 WPIEGTNLYVPIDLAA--LPIYSRNREFSGFRG---FGIVHVNRVDNDPRALGKRLDKKF 204
             ++         + A            +G  G     +               R   + 
Sbjct: 288 LHLDAARGDGSRTIFAEMRAHRIEAG-LAGANGSTVVAVTRDVSEHRRHAQELDRARAEA 346

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS-SLTEYYAHKDDVLKTEKYPLLT 263
               E+K    +    +              +  + + SL+   + +   +  +    L 
Sbjct: 347 ERADEVKTHFLATVSHELRTPLNAIIGFSDVLGGEGAMSLSPERSREYAGIIAQSGRHLL 406

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTL--------QNNSKESFEYLSHRNHPSLSAYF 315
              ++L +       + +   +      L        +  +  S   L+    P+  A  
Sbjct: 407 DVVNTLLDISRIRGGHFDFQPEPVDVEALIRGCCDLMRLKADASGIALTSAPVPASCALV 466

Query: 316 DEGENLTPETVDKCPIPF-FVYSHGNLFYANPS 347
            +        ++       F    G +      
Sbjct: 467 ADARACRQMLINLISNAVKFTPRGGRVEVMVRR 499


>gi|76817567|ref|YP_336536.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei 1710b]
 gi|254264305|ref|ZP_04955170.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei 1710a]
 gi|76582040|gb|ABA51514.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei 1710b]
 gi|254215307|gb|EET04692.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei 1710a]
          Length = 769

 Score =  332 bits (851), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 104/519 (20%), Positives = 180/519 (34%), Gaps = 27/519 (5%)

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEI 362
           S R + +L              +        V   HG L Y NPS   L        +  
Sbjct: 111 SRRANDALRRREAAARRYYETLLQSLTQGVVVSDRHGMLTYMNPSAAALIGC-DATAVRG 169

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
                                +          +       +  +    + +        +
Sbjct: 170 LPFRDVYRAYDGRGARVRASALEHVLRSGRSASVEGH--WLAPHDGQRVPIAEAASPLVD 227

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
              +      I  +    R      ++    L  ++EA+ D I  +     I S N A  
Sbjct: 228 SAGDMTGAVLIVRDISIERERSAASQM----LRRLVEASPDAIVGVGSNRRITSWNPAAR 283

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
           ++FGY           + +           L E +            L   ++   +   
Sbjct: 284 RMFGYDEHAARGCDVAMLIAPRWLRNHP--LPESVPDMREPIENVDVLCVRQDGGRMRAT 341

Query: 543 IIIKKLPFSSCYSL----TMHDISEWKQEKNK-------LSHAKKIAEKESSHKSDFLAR 591
           +    +       +    T+ D  E ++ + +          A++ A+  +  K + LA 
Sbjct: 342 MSASPVFDERDACIALSLTLRDTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLAT 401

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           VSHE+RTPL  I G+ EV++N   G L      +  + IDRS   +  +V D+LD S + 
Sbjct: 402 VSHELRTPLNVIYGWIEVLRNPVDGAL----QQQAIDAIDRSARSLSRMVGDILDASSLA 457

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
           +GK+ L   PV L   V++    +   A    I +    A     +  D   ++Q+  N+
Sbjct: 458 TGKLRLDAMPVDLVRIVNDVTGALGAAAQADGIALSVECALATCIVSGDGERLRQMLSNL 517

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           LSNA  FTP GG++ +S       +  L V DTG G++   L    + F +   +     
Sbjct: 518 LSNAFKFTPRGGRVTVSLERHD-AQAKLTVADTGQGISPEFLPHVFEAFRRAEGAPASPR 576

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFP 809
            G GLGL + + + + + GK    S    +GT   I  P
Sbjct: 577 RGLGLGLSIVRHIAELHGGKVEAASAGKNRGTTFAITLP 615



 Score = 65.4 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/225 (12%), Positives = 54/225 (24%), Gaps = 5/225 (2%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK---RQNTWYGK 146
           D HG L  ++      IG  A  + G+   DV               L+   R       
Sbjct: 144 DRHGMLTYMNPSAAALIGCDATAVRGLPFRDVYRAYDGRGARVRASALEHVLRSGRSASV 203

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
              W        VPI  AA P+     + +G     IV    ++ +  A  + L +    
Sbjct: 204 EGHWLAPHDGQRVPIAEAASPLVDSAGDMTGA--VLIVRDISIERERSAASQMLRRLVEA 261

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
             +   G  S  +      + +    +     +   +    A +          +    E
Sbjct: 262 SPDAIVGVGSNRRITSWNPAARRMFGYDEHAARGCDVAMLIAPRWLRNHPLPESVPDMRE 321

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
                       +  +         + +                 
Sbjct: 322 PIENVDVLCVRQDGGRMRATMSASPVFDERDACIALSLTLRDTGE 366


>gi|163845997|ref|YP_001634041.1| histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|222523722|ref|YP_002568192.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl]
 gi|163667286|gb|ABY33652.1| Histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|222447601|gb|ACM51867.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl]
          Length = 1347

 Score =  332 bits (851), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 100/432 (23%), Positives = 190/432 (43%), Gaps = 26/432 (6%)

Query: 406  NRENSLAMTFIPFEKANQFPENMPQNGIEPED---VDTRINKRKMEIEVMQLCSILEATS 462
            +   ++   +     A    E    + +  +    +     + ++     +   I+ A  
Sbjct: 652  DEPPAVLCFYAGQPAAFDHDEIQLLDELVRDIIFGLLVSQQEAQLRTSEQRNHLIVSALP 711

Query: 463  DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522
            D +  +  +G ++    A S +       ++             +     L+   +    
Sbjct: 712  DLVLRLRPDGQVVDVVAAESMVLPMAPTAMINSTLEQLFPAAIATQYRQALSAAFASGEL 771

Query: 523  QTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK-------------- 568
            QTL    +   KE         IK    +      + D++ W+  +              
Sbjct: 772  QTLAYQLIVEAKEYFF---EARIKAALPAEEAIAIVRDVTAWRNAELALQVERDLLAQRV 828

Query: 569  ----NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
                 +L  A     + +  K +FLA +SHE+RTPL +I+  SE +  + +GPL   +  
Sbjct: 829  AERTAELHRANAELLRAARTKDEFLANMSHELRTPLNSILALSESLLEELYGPL-RDQQQ 887

Query: 625  EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
            +    I+ SG  +L ++ND+LD++KIE+ ++ L  E V+  +    +++LV+  A +K+I
Sbjct: 888  KAIRAIEASGRHLLALINDVLDLAKIEANRIELVKEVVAASDVCEASMALVKEQATKKQI 947

Query: 685  LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-TSNEEVILRVRD 743
             +     +   R +AD R +KQI +N+LSNA+ FTP+GG + +  T  T+   +   V D
Sbjct: 948  HLSIQLDDPHARFVADPRRLKQILVNLLSNAVKFTPAGGAVSLQVTTDTTQGTIAFTVSD 1007

Query: 744  TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
            TG+G+   +L +  +PF Q+ +    + EGTGLGL L + +V+ + GK  + S P  G+ 
Sbjct: 1008 TGIGIAEEDLSRLFQPFVQLDSGLSRQHEGTGLGLVLVRRLVELHGGKVEVESMPGVGSR 1067

Query: 804  IEIIFPLYDTSH 815
              +  P    +H
Sbjct: 1068 FTVTLPYQPVTH 1079


>gi|298481842|ref|ZP_07000032.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
 gi|298272064|gb|EFI13635.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
          Length = 785

 Score =  332 bits (851), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 109/624 (17%), Positives = 224/624 (35%), Gaps = 40/624 (6%)

Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD 252
              +   L    +  ++ + G   V  E+ +     +         ++     Y     +
Sbjct: 48  AVRILDSLPDMLTVFNQNEVGIEVVSNEETNHVGISNKDFKGMYMREMVPPEAYQNIHSN 107

Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
           + +      +++    L    + H      +   + +             L      +  
Sbjct: 108 MRQAVSTGAVSTAHHELDFNGEHHHYENRIFPLDEEY------------VLIMCRDITER 155

Query: 313 AYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
                   +    +DK       V   G L YAN  F+               G+  + D
Sbjct: 156 VTTQRQLEVFKSVLDKVSDSILAVSEDGTLVYANKQFIEEYGVT------QQMGIQKIYD 209

Query: 372 APKLS--DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
            P          + +   R +    A  A       ++E    ++     + N+      
Sbjct: 210 LPVSMTTKEAWERRLQEIRDNDGTFAYRAAYMRKGEDKERMHQVSTFLIRENNEE----L 265

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG--IILSTNRAVSKLFGY 487
                 +  D    + ++    + L  IL      + + + E     L  N+A +   G 
Sbjct: 266 TWFFTQDITDVIKKQDELRELNLLLDGILNNIPVYLFVKDPENDFRYLYWNKAFADHSGI 325

Query: 488 PVEDILRKPFTVFLE-QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
           P    +                      E+L    R  +++  L  T + +++     + 
Sbjct: 326 PASKAIGHTDYEVFPSHGDAEKFRKDDLELLQTHKRIDMQETYLSVTGKARIVQTLKALV 385

Query: 547 KLPFSSCY-SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
            +            DI+  +  + +L  A+  AE+    KS FLA +SHEIRTPL AI+G
Sbjct: 386 PMEGRKPLLIGISWDITNLQNIEQELIKARIKAEQSDRLKSAFLANMSHEIRTPLNAIVG 445

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
           FS+++               Y+  I+++ +++L ++ND+LD+SKIE+G +     P++L 
Sbjct: 446 FSQLL----PAAETAEEKKLYSGIINQNSDILLQLINDILDLSKIEAGTLEYIKRPMNLG 501

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725
           E      ++ +    E  + +     +    I  D   + Q+  N L+NA  FT +G +I
Sbjct: 502 EVCRTIYAVHKERVKE-GVTLVFDNEDENLFIEGDQNRIMQVITNFLTNASKFTYAG-EI 559

Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
            +    T    + + V+DTG+G+   +++   + F ++ +      +GTGLGL + + ++
Sbjct: 560 RLGFERTDKN-IRVYVKDTGIGIEPEKVDHIFERFVKLNSF----AQGTGLGLSICQMII 614

Query: 786 DANMGKFYIFSTPAKGTLIEIIFP 809
           +   G+  + S   KG+      P
Sbjct: 615 EKIGGEIGVTSELGKGSTFYFTIP 638


>gi|91226808|ref|ZP_01261461.1| sensor histidine kinase FexB [Vibrio alginolyticus 12G01]
 gi|269965795|ref|ZP_06179891.1| Aerobic respiration control sensor protein ArcB [Vibrio
           alginolyticus 40B]
 gi|91188939|gb|EAS75223.1| sensor histidine kinase FexB [Vibrio alginolyticus 12G01]
 gi|269829593|gb|EEZ83831.1| Aerobic respiration control sensor protein ArcB [Vibrio
           alginolyticus 40B]
          Length = 784

 Score =  332 bits (851), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 88/406 (21%), Positives = 176/406 (43%), Gaps = 19/406 (4%)

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
               +         +E E       + ++      L S ++A+ D I   N +G+    N
Sbjct: 122 RIKAEEAREEAMQDLENEVFQRERTQLELAERTALLRSFIDASPDLIYYRNADGVFSGCN 181

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
           RA+ +L G     ++         +     +     ++ + +   T E+        +  
Sbjct: 182 RAMEELTGKKEHQLVGLSPWDVYSKEIAEHIVDTDQKVFADNQAITYEQWLEYPDGRKHY 241

Query: 539 LSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
             LR +                 DI+E K+ +  L       EK S  K+ F++ +SHE+
Sbjct: 242 FELRKVPFYSKDGRHLGLVGFGRDITERKRHEESL-------EKASRDKTTFISTISHEL 294

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTPL  I+G S ++ +            ++   I+ S   + +I ND++D+ K +  K+ 
Sbjct: 295 RTPLNGIVGLSRMLLDSPL----TEEQRKHMQTINVSAITLGNIFNDIIDMDKFDRRKLE 350

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNA 715
           L   P++ ++ V+E  S+  L A +K +       +++P+ I  D   ++Q+  N++SNA
Sbjct: 351 LLPAPLNFEDFVAEIESISALMAEQKGLRFDLERLSDLPKAIEVDATRLRQVIWNLVSNA 410

Query: 716 IHFTPSGGQI-IISTTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGE 772
           + FT  GG +  +S     +   +I+ V DTG+G+ + EL+K    + Q+ + +      
Sbjct: 411 MKFTKEGGVVMTVSADVEDDFATIIMEVEDTGIGIPDEELDKIFAMYYQVKSGKDNLHAV 470

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF--PLYDTSHP 816
           GTG+GL ++K +++   G   + S    G+   +    P+ + + P
Sbjct: 471 GTGIGLAVSKQLINMMDGDITVTSEEGFGSTFTVSIHVPIVELAEP 516



 Score = 46.9 bits (110), Expect = 0.015,   Method: Composition-based stats.
 Identities = 16/129 (12%), Positives = 37/129 (28%), Gaps = 5/129 (3%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID-PNNHIGDLLKRQNTWYGKTT 148
           +A G     +  + +  G    +++G+   DV      +   +    +         +  
Sbjct: 172 NADGVFSGCNRAMEELTGKKEHQLVGLSPWDVYSKEIAEHIVDTDQKVFADNQAITYEQW 231

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           L   +G       +L  +P YS++    G  GFG               ++  +  +   
Sbjct: 232 LEYPDGR--KHYFELRKVPFYSKDGRHLGLVGFG--RDITERKRHEESLEKASRDKTTFI 287

Query: 209 EIKKGHSSV 217
                    
Sbjct: 288 STISHELRT 296


>gi|295087809|emb|CBK69332.1| PAS domain S-box [Bacteroides xylanisolvens XB1A]
          Length = 785

 Score =  332 bits (851), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 109/624 (17%), Positives = 224/624 (35%), Gaps = 40/624 (6%)

Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD 252
              +   L    +  ++ + G   V  E+ +     +         ++     Y     +
Sbjct: 48  AVRILDSLPDMLTVFNQNEVGIEVVSNEETNHVGISNKDFKGMYMREMVPPEAYQNIHSN 107

Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
           + +      +++    L    + H      +   + +             L      +  
Sbjct: 108 MRQAVSTGAVSTAHHELDFNGEHHHYENRIFPLDEEY------------VLIMCRDITER 155

Query: 313 AYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
                   +    +DK       V   G L YAN  F+               G+  + D
Sbjct: 156 VTTQRQLEVFKSVLDKVSDSILAVSEDGTLVYANKQFIEEYGVT------QQMGIQKIYD 209

Query: 372 APKLS--DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
            P          + +   R +    A  A       ++E    ++     + N+      
Sbjct: 210 LPVSMTTKEAWERRLQEIRDNDGTFAYRAAYMRKGEDKERMHQVSTFLIRENNEE----L 265

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG--IILSTNRAVSKLFGY 487
                 +  D    + ++    + L  IL      + + + E     L  N+A +   G 
Sbjct: 266 TWFFTQDITDVIKKQDELRELNLLLDGILNNIPVYLFVKDPENDFRYLYWNKAFADHSGI 325

Query: 488 PVEDILRKPFTVFLE-QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
           P    +                      E+L    R  +++  L  T + +++     + 
Sbjct: 326 PASKAIGHTDYEVFPSHGDAEKFRKDDLELLQTHKRIDMQETYLSVTGKARIVQTLKALV 385

Query: 547 KLPFSSCY-SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
            +            DI+  +  + +L  A+  AE+    KS FLA +SHEIRTPL AI+G
Sbjct: 386 PMEGRKPLQIGISWDITNLQNIEQELIKARIKAEQSDRLKSAFLANMSHEIRTPLNAIVG 445

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
           FS+++               Y+  I+++ +++L ++ND+LD+SKIE+G +     P++L 
Sbjct: 446 FSQLL----PAAETAEEKKLYSGIINQNSDILLQLINDILDLSKIEAGTLEYIKRPMNLG 501

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725
           E      ++ +    E  + +     +    I  D   + Q+  N L+NA  FT +G +I
Sbjct: 502 EVCRTIYAVHKERVKE-GVTLVFDNEDENLFIEGDQNRIMQVITNFLTNASKFTYAG-EI 559

Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
            +    T    + + V+DTG+G+   +++   + F ++ +      +GTGLGL + + ++
Sbjct: 560 RLGFERTDKN-IRVYVKDTGIGIEPEKVDHIFERFVKLNSF----AQGTGLGLSICQMII 614

Query: 786 DANMGKFYIFSTPAKGTLIEIIFP 809
           +   G+  + S   KG+      P
Sbjct: 615 EKIGGEIGVTSELGKGSTFYFTIP 638


>gi|330878543|gb|EGH12692.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
          Length = 775

 Score =  332 bits (851), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 130/608 (21%), Positives = 236/608 (38%), Gaps = 30/608 (4%)

Query: 222 YDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTI--N 279
            +  + Q+     R+      +   +    +   + +  LLT +E  LP   +   +   
Sbjct: 39  AERQTAQAEEDVRRVLLVQGDIQTLHTQIAEGAASVRGYLLTHQEDFLPGYINAQPLIDA 98

Query: 280 LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP--FFVYS 337
                             +S E L       L      G                     
Sbjct: 99  ALVRLDANIRDQQMREHLKSIEPLIRTKVDGLERLRSMGREDHETVAAILVENKYVLDQL 158

Query: 338 HGNLFYANPSFLLLTKYKSVDDIEIAGGL--STLLDAPKLSDNNAIKPVMLYRSDRTCIA 395
              +         L   ++         L  STLL A        +  +ML +       
Sbjct: 159 RERIGVMREREDALLAERTEAAAATRERLLWSTLLAAACGIFGAILAVLMLSKG------ 212

Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
             AR+H +Q N +       +  +   +         +          +R +     +L 
Sbjct: 213 IVARVHQVQRNAQRLALGHPLLPQPPEKDEIGQLGTRLVEAGQLLAERERALRDNEERLR 272

Query: 456 SILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
            I+E   D GI  ++R G + + N    ++ GY  ++I+ + F+VF              
Sbjct: 273 LIIEGVKDYGIFALDRNGYVTTWNAGAERIKGYTEQEIIGQHFSVFYLPQECPQHPDM-- 330

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNK 570
            +    +     + +    K+       ++I     S      +S    DIS+ +  +  
Sbjct: 331 ALHEATVNGRYTEESWRRRKDGSRFWASVVITAQYDSNDELRGFSKITRDISDRRVAEIA 390

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           L  A++ AE+ S  KS+FL+R+SHE+RTPL +I+GF++++                  +I
Sbjct: 391 LGTAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLL-----DMDSPASQRPQVGHI 445

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT-- 688
            R+G  +L ++N++LDI++IE+G ++L  EPVSL   + E + LV   A +  I +    
Sbjct: 446 LRAGQHLLKLINEVLDIARIEAGHVSLSLEPVSLSSVLKETLVLVSPMAADGNIELEELP 505

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748
              + +  ++AD + + Q+ LN+LSNAI +    GQ+ I    ++   V + V DTG G+
Sbjct: 506 HLPDELG-VIADRQRLVQVLLNLLSNAIKYNRPDGQVRIEVDRSAE-RVTVSVVDTGYGI 563

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
               L +  KPF ++        EGTGLGL L+K+M++   G   + +T  +G    +  
Sbjct: 564 APERLGQLFKPFERLDA--NPSVEGTGLGLALSKSMLEMMNGTLSVQTTQNEGCCFTLAL 621

Query: 809 PLYDTSHP 816
           P      P
Sbjct: 622 PFVAVHAP 629



 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/280 (9%), Positives = 73/280 (26%), Gaps = 22/280 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH--IDPNNHIGDLLKRQNTW 143
            + +D +GY+   +    +  G    ++IG               P+  + +       +
Sbjct: 283 IFALDRNGYVTTWNAGAERIKGYTEQEIIGQHFSVFYLPQECPQHPDMALHEATVNGR-Y 341

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGF---------RGFGIVHVNRVDNDPR 194
             ++     +G+  +  + + A   Y  N E  GF         R    + +     +  
Sbjct: 342 TEESWRRRKDGSRFWASVVITAQ--YDSNDELRGFSKITRDISDRRVAEIALGTAREEAE 399

Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254
              +   +  S +    +   +       +    SP         +    ++      + 
Sbjct: 400 RASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSPASQRPQVGHILRAGQHLLKL--IN 457

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
           +      + +   SL  +    +  L +         +  +     E L H         
Sbjct: 458 EVLDIARIEAGHVSLSLEPVSLSSVLKETLV--LVSPMAADGNIELEELPHLPDE--LGV 513

Query: 315 FDEGENLTPETVDKCPIPFFVYSHGNLFY--ANPSFLLLT 352
             + + L    ++                   + S   +T
Sbjct: 514 IADRQRLVQVLLNLLSNAIKYNRPDGQVRIEVDRSAERVT 553


>gi|149375878|ref|ZP_01893645.1| PAS/PAC sensor hybrid histidine kinase [Marinobacter algicola
           DG893]
 gi|149359758|gb|EDM48215.1| PAS/PAC sensor hybrid histidine kinase [Marinobacter algicola
           DG893]
          Length = 1054

 Score =  332 bits (851), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 101/637 (15%), Positives = 216/637 (33%), Gaps = 47/637 (7%)

Query: 197 GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256
                +K      +      V  E  +   +Q     +     +            +L  
Sbjct: 190 LSSSAEKTEQEQVLAGQLKRVLNEAQETLQRQPDASPILKSELLRYSKSDDVSSIALLNR 249

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
           +  P+  + + +     +   ++             + +    ++   +     ++   D
Sbjct: 250 QGEPIAQAGKVNAFSPGEVQQLSGADNLAIWLP-DFEGSLVSRWKAGQYHYRLPVTGLPD 308

Query: 317 EGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
             E +                       N SF  L     +  +        L       
Sbjct: 309 GTELMAERPAAPLIQAIETQR-------NKSFAFLAGMTLLSILASFFLSRVLTLPLSRL 361

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           +  +       R  R      +R+H       +  +M+        +             
Sbjct: 362 NKASRHLHDKIRHQRQSELPDSRVHEYASLSASLKSMSDTLTHTFAELDNARANL----- 416

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
           +++ +   R++      L ++LEA+++  I   + +G I   N+    L GY    ++  
Sbjct: 417 ELEVKTRTRELVNTSAMLSNVLEASTEMAIIATDTDGTITLFNKGAENLLGYSSSSMVGT 476

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLE-------------KITLGSTKEEKLLSLR 542
                   ++            + +     +             +      K  K + + 
Sbjct: 477 HSPALFHLSSEIEERSQELYEETGETVSGFDVLVQRPLHEGSETREWSYVNKLGKQIPVM 536

Query: 543 IIIKKLPFS----SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
           + +  +       + +     DI+E K+ +                K++F++ VSHE+RT
Sbjct: 537 LTVTPIRDDVDRITGFLGIAQDITERKRLE--------------QMKTEFISTVSHELRT 582

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
           PLT++ G   ++   R G +   +  E  N   R+   +  ++NDLLD  KI +GK++  
Sbjct: 583 PLTSVSGAIGLVLGGRLGDIP-EKAQELLNTAQRNSERLAHLINDLLDTDKIAAGKIHFD 641

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718
            +   +   + +++   + Y  E+ + +  +       +  D++ +KQ+  N+LSNAI F
Sbjct: 642 MQVTPIIPILEQSLEENRTYCAEQNLKLVLTRKLTQTSVKVDVQRLKQVLANLLSNAIKF 701

Query: 719 TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
           +P GG + I  T T  + + + V D G G+      K  + F Q  +S   +  GTGLGL
Sbjct: 702 SPDGGTVSIEATSTDTD-ITVSVVDQGPGIPEDFQHKVFQKFAQADSSDTRQKGGTGLGL 760

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            + + +V    G     +T  KGT      P   ++ 
Sbjct: 761 AITRELVKRMGGTIGFETTEGKGTRFFFTLPAVRSAQ 797



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 44/393 (11%), Positives = 92/393 (23%), Gaps = 32/393 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            D  G +   ++     +G  +  M+G     +  +             +   T  G   
Sbjct: 449 TDTDGTITLFNKGAENLLGYSSSSMVGTHSPALFHLSSEIEERSQELYEETGETVSGFDV 508

Query: 149 LWPI---EGTNLY-----------VPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR 194
           L      EG+              +P+ L   PI       +GF G  I           
Sbjct: 509 LVQRPLHEGSETREWSYVNKLGKQIPVMLTVTPIRDDVDRITGFLG--IAQDITERKRLE 566

Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS---PPPHLRMKNKVSSLTEYYAHKD 251
            +    +   +  HE++   +SV      +   +    P     + N     +E  AH  
Sbjct: 567 QMKT--EFISTVSHELRTPLTSVSGAIGLVLGGRLGDIPEKAQELLNTAQRNSERLAHLI 624

Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
           + L              +        +  +    + Y          + +         +
Sbjct: 625 NDLLDTDKIAAGKIHFDMQVTPIIPILEQSLEENRTYCAEQNLKLVLTRKLTQTSVKVDV 684

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
                   NL    +   P    V        A  +   +T    V  ++   G+     
Sbjct: 685 QRLKQVLANLLSNAIKFSPDGGTVS-----IEATSTDTDIT----VSVVDQGPGIPEDFQ 735

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
                           +   T +  +     ++         T         F     ++
Sbjct: 736 HKVFQKFAQADSSDTRQKGGTGLGLAITRELVKRMGGTIGFETTEGKGTRFFFTLPAVRS 795

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
                       ++  +     L  I+E   D 
Sbjct: 796 AQAIPIPVHLGARQPAQASPRIL--IVEDDPDA 826


>gi|322419044|ref|YP_004198267.1| multi-sensor signal transduction histidine kinase [Geobacter sp.
           M18]
 gi|320125431|gb|ADW12991.1| multi-sensor signal transduction histidine kinase [Geobacter sp.
           M18]
          Length = 583

 Score =  331 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 96/578 (16%), Positives = 222/578 (38%), Gaps = 37/578 (6%)

Query: 239 KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP--EQEDFHTINLNQYTKKQYFGTLQNNS 296
           + + +T +      +        +       P    +    I        Q    + ++ 
Sbjct: 32  QTTEMTRHLIEDAGLAGMVAAERIHDLHRDAPVVASDASRRIKARVTVITQDGAVIGDSD 91

Query: 297 KES---FEYLSHRNHPSLSAYFDEGENLTPETVDKC-PIPFFVYSHGNLFYANPSFLLL- 351
                  E  +H + P +     +GE  +    +       +          + + + L 
Sbjct: 92  IPPEKLPELDNHLSRPEVREAMTKGEGSSLRYSETLHSDMLYAAHVFRTKAGHAAVMRLA 151

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411
               +++         T+L    ++    I       +  +     A         +  +
Sbjct: 152 LPMSALEA--AKSSFRTVLAWAFITAAITIVCSTYLLAKVSMKPLHAIASMACRIGKGEI 209

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471
                P     +  E            + ++++  +  E  +L +IL    +GI + + +
Sbjct: 210 GTRL-PTYTDPELMELTRALNEMAAKTEAQLDR--LGAEKNRLDTILRGMGEGIMVADPQ 266

Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
           G I   N A   LFG   +D+  +     ++ +    ++    +I+S    +   +    
Sbjct: 267 GTITLVNPAFKGLFGL-QDDVEGR---QLIDISRHPALHESFRDIISTRQERI--EELQL 320

Query: 532 STKEEKLLSLRIIIKKLPFS-SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
            + +E+ + +  +        +      HDIS+ +Q +                + DF+A
Sbjct: 321 HSPKERSVLIHWVPLLEGVVLNGVVAVFHDISDIRQLE--------------KIRRDFVA 366

Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650
            VSHE+RTP+T I G++E +           +  ++   +    + +  +++DLL +S++
Sbjct: 367 NVSHELRTPVTIIKGYAETLIAGAL--ENPSQAAKFVKIMYSHADRLAVLISDLLTLSQL 424

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710
           ESG + L    V++ +     ++L++    E+ I +  S       +LAD   ++Q+ +N
Sbjct: 425 ESGTIALETRSVAVYDIAEHVVALLEQKIRERSIGVDISGLKGAANVLADPVRLEQVIVN 484

Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           ++ NA+ +TP+GG + + T    +  V++ VRDTG+G+   +L +  + F ++  ++   
Sbjct: 485 LVDNAVKYTPAGGSVTL-TAAEDDGRVVIAVRDTGIGIPPKDLPRIFERFYRVDTARSRD 543

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
             GTGLGL + K ++  + G     S+  +G+   +  
Sbjct: 544 EGGTGLGLSIVKHILQLHGGTVSAESS-GQGSAFFVTL 580



 Score = 41.2 bits (95), Expect = 0.79,   Method: Composition-based stats.
 Identities = 33/270 (12%), Positives = 69/270 (25%), Gaps = 31/270 (11%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK-TT 148
           D  G +  ++       G     + G +L D+S    +  +    D++  +     +   
Sbjct: 264 DPQGTITLVNPAFKGLFGL-QDDVEGRQLIDISRHPAL--HESFRDIISTRQERIEELQL 320

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
             P E + L   + L             G    G+V V    +D R L K      +++ 
Sbjct: 321 HSPKERSVLIHWVPL-----------LEGVVLNGVVAVFHDISDIRQLEKIRRDFVANVS 369

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
              +   ++ K   +          L   ++ +   +      D L      LLT  +  
Sbjct: 370 HELRTPVTIIKGYAETL----IAGALENPSQAAKFVKIMYSHADRLAVLISDLLTLSQLE 425

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
                            +     L+   +E    +        +    +   L    V+ 
Sbjct: 426 SGTIALETRSVAVYDIAEHVVALLEQKIRERSIGVDISGLKGAANVLADPVRLEQVIVNL 485

Query: 329 CPIPF------------FVYSHGNLFYANP 346
                                 G +  A  
Sbjct: 486 VDNAVKYTPAGGSVTLTAAEDDGRVVIAVR 515


>gi|288942028|ref|YP_003444268.1| multi-sensor signal transduction histidine kinase [Allochromatium
           vinosum DSM 180]
 gi|288897400|gb|ADC63236.1| multi-sensor signal transduction histidine kinase [Allochromatium
           vinosum DSM 180]
          Length = 867

 Score =  331 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 94/415 (22%), Positives = 185/415 (44%), Gaps = 17/415 (4%)

Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
           HT+  + +    +  +           M +  +   ++     +  ++   ++  ++   
Sbjct: 318 HTLSRDGKELGILILVAAIL---VVLAMLRQAVAAGELARLKTEHAVQASEIRFAALARH 374

Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520
           +SD I +   +      + ++ ++ G+   D++R     +L+       + ++  +L+  
Sbjct: 375 SSDLIILTGTDLRARFASDSIQRVLGHTPRDLMRVSLLDYLQPEDRVRASRFIARVLAAP 434

Query: 521 LRQTLEKITLGSTKEEKLLSLRI---IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI 577
              TL         +     + I    +   P      L   D++E K+ +++L  A+  
Sbjct: 435 DI-TLVTEWPMRHADGTWRDIEILATNLSHNPAVGGLVLNGRDVTERKRHQHELEQARAA 493

Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
           AE  +  K +FLA +SHEIRTP+ A+IG      +        P+  +Y   I  +G  +
Sbjct: 494 AESANRAKGEFLANMSHEIRTPMHAVIGL----SSLLLDSTLLPQQRDYLERIHLAGTAL 549

Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR- 696
           L ++ND+LD SKIE+G+M L   P+ L E +    +L ++ A +K + +    A  +P  
Sbjct: 550 LGVLNDILDYSKIEAGRMRLESIPLRLQEVLDTTHALFEIQAEKKPLSLEFELAPEVPER 609

Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYE 752
           +  D   + Q+  N++ NA+ FT +GG + +  T     E    + + VRDTG+G+T  +
Sbjct: 610 LQGDPLRLLQVLNNLVGNALKFTHTGG-VWVGVTCQEQTETSVLIKISVRDTGIGLTPAQ 668

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           LE+    F Q   S   +  GTGLGL + K + +   G+  + S   +G+     
Sbjct: 669 LERLFGVFHQADASTTRQYGGTGLGLSICKRLTELMGGEIGVESVAGQGSTFWFT 723



 Score = 37.7 bits (86), Expect = 7.5,   Method: Composition-based stats.
 Identities = 8/156 (5%), Positives = 31/156 (19%), Gaps = 8/156 (5%)

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKS 356
                                E               +        +A+ S   +  +  
Sbjct: 344 RQAVAAGELARLKTEHAVQASEIRFAALARHSSDLIILTGTDLRARFASDSIQRVLGHTP 403

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
            D + ++      L      ++       + R              ++        +  +
Sbjct: 404 RDLMRVS------LLDYLQPEDRVRASRFIARVLAAPDITLVTEWPMRHADGTWRDIEIL 457

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
                +  P          +  + + ++ ++E    
Sbjct: 458 A-TNLSHNPAVGGLVLNGRDVTERKRHQHELEQARA 492


>gi|163759054|ref|ZP_02166140.1| putative two-component sensor histidine kinase transcriptional
           regulatory protein [Hoeflea phototrophica DFL-43]
 gi|162283458|gb|EDQ33743.1| putative two-component sensor histidine kinase transcriptional
           regulatory protein [Hoeflea phototrophica DFL-43]
          Length = 642

 Score =  331 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 106/375 (28%), Positives = 179/375 (47%), Gaps = 13/375 (3%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK----LFGYPVEDILRKPFTV 499
              ME     +  IL+     I   N  G ++       +      G+ + D+  + F  
Sbjct: 227 HAAMEQVAADVPQILDLMPGLITRHNAHGNVVCV---AGRDKHACLGW-IGDVTGRGFIN 282

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-YSLTM 558
            +              +   + R+  E          + +   + +         ++   
Sbjct: 283 RIHVADRIAFLDAFDALRLGESRREFELRFERIDAAGQFVHAALSLSAEHGPDGSFAGVF 342

Query: 559 ---HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
               DIS+    + + S     A+  ++ K+ FLA VSHE+RTPL AI+GFS+++  + F
Sbjct: 343 VQSRDISDQVAGRLRASTMADEADMANASKTRFLAAVSHELRTPLNAILGFSDILAREMF 402

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
           G   + R  EY   I +SG  +L +VN +LD+SKIESG+  +  EP  L E V    +++
Sbjct: 403 GKFNDERQREYVELIHQSGEHLLALVNTMLDMSKIESGRYEVFVEPFLLSEVVERCDAML 462

Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
           +L A ++ +++    A  +  ++AD R+V+QI +N++ NAI FT +GG I +        
Sbjct: 463 RLQAEQRGVVMTRRMAPGLGEVVADRRAVQQILINLIGNAIKFTEAGGVINVDAGIHE-G 521

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            ++L V DTG+G+   +L    +PF Q+ N      EGTGLGL L K +VD + G+F I 
Sbjct: 522 LLVLSVSDTGIGIPEEKLALIGQPFVQVQNGLARHFEGTGLGLSLVKGLVDLHGGQFAIA 581

Query: 796 STPAKGTLIEIIFPL 810
           S   +GT++ I  P+
Sbjct: 582 SQEGEGTVVTIRLPV 596


>gi|24375489|ref|NP_719532.1| sensory transduction histidine kinase [Shewanella oneidensis MR-1]
 gi|24350346|gb|AAN56976.1|AE015830_11 sensory transduction histidine kinase [Shewanella oneidensis MR-1]
          Length = 1689

 Score =  331 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 104/511 (20%), Positives = 190/511 (37%), Gaps = 23/511 (4%)

Query: 307  NHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365
                ++A  +   N      D        +   G +   N +   L   +    +     
Sbjct: 689  RRSRMAAQLESSMNKFHALFDSVMDACVIIDKRGVIKECNAALQTLLGVEDKTALVGTSL 748

Query: 366  LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
                L    +     I   +     +  +   A +           ++      K+ +  
Sbjct: 749  TQFHLADTFMGSAVQIAQSVEDVLKQGLLKFEADIT-----DSQGQSIPAEVTLKSIELN 803

Query: 426  ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
                         + R+  R +  E   L ++L  +  G+ +    G     N  ++ + 
Sbjct: 804  TERFVLATYHNLAERRLVDRLIRHERNLLKNVLGMSPIGVWVC-VNGTCRYVNAQMTLMT 862

Query: 486  GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
            G  VE  +   F        P    HY+ E+       T E    G   +   +      
Sbjct: 863  GLEVEHAVADIFLQ------PKDYWHYIRELAPEQECITFESKLKGYHGQILDVLFTAYP 916

Query: 546  KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
                          DI++ K  + +L+ AK  A+  +  KSDFLA +SHEIRTP+ AIIG
Sbjct: 917  TFYDGQHANLCWALDITQEKAIQAELASAKLQADAANRAKSDFLANMSHEIRTPMNAIIG 976

Query: 606  FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
             S +            +  +Y   + ++   +L+I+ND+LD SKIE+ K+ +      LD
Sbjct: 977  MSYLALQTDLA----EKRKDYIAKVHQAAGSLLNIINDILDFSKIEANKLTVEHIEFDLD 1032

Query: 666  EAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ 724
            E +++  +++     E  + +    A + PR  + D + + QI LN  +NA+ F+P G  
Sbjct: 1033 EVLTQLNNVIGFKVEENSMRLIYDIATDCPRYFIGDPQRLGQILLNYCNNAVKFSPKGSD 1092

Query: 725  IIISTTHT---SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
            I++S           +   V D G+G+   +  +    F Q   S   +  GTGLGL + 
Sbjct: 1093 ILLSCQAELDKQGATLTFCVADDGIGIPLDKQARLFHSFEQGDTSTSRKYGGTGLGLAIC 1152

Query: 782  KAMVDANMGKFYIFSTPAKGTLI--EIIFPL 810
            K + +   G+ +  S   +G+     +  PL
Sbjct: 1153 KRLSELMQGEVWCESELGQGSRFYLRLHLPL 1183



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 34/367 (9%), Positives = 98/367 (26%), Gaps = 20/367 (5%)

Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291
             ++         + +A     + +        ++  L      H   +    K      
Sbjct: 468 FEVQPTQSWGQTLKDFAADKLDMISLISASEDRKQRILFTDAIGHFPAVIVMRKDAEL-V 526

Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF---FVYSHGNLFYANPSF 348
                         R   +      +   +     D+                    P  
Sbjct: 527 DGIEGLFGKTVAVTRGDITEELLRKKYPEINIIAFDRLEDVLSTTLASQVDAAVMLLPKA 586

Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIA------ASARLHT 402
                  +  ++ I   L    +       +  +   +       I         +R  T
Sbjct: 587 GQSLLSPANKELTIVAPLDDEFEHSIGVRRDWPELQSILNKALAQIPSSTRAELDSRWFT 646

Query: 403 IQWNRE------NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
           ++++           A++             +   G++ E +       ++E  + +  +
Sbjct: 647 VKYDFGMDPQQIKRWAISSAMVILGLFACFILWNYGLKRELLRRSRMAAQLESSMNKFHA 706

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRKPFTVF-LEQNTPSVMNHYLT 514
           + ++  D   II++ G+I   N A+  L G      ++    T F L             
Sbjct: 707 LFDSVMDACVIIDKRGVIKECNAALQTLLGVEDKTALVGTSLTQFHLADTFMGSAVQIAQ 766

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIII--KKLPFSSCYSLTMHDISEWKQEKNKLS 572
            +  +  +  L+     +  + + +   + +   +L        T H+++E +     + 
Sbjct: 767 SVEDVLKQGLLKFEADITDSQGQSIPAEVTLKSIELNTERFVLATYHNLAERRLVDRLIR 826

Query: 573 HAKKIAE 579
           H + + +
Sbjct: 827 HERNLLK 833



 Score = 41.9 bits (97), Expect = 0.39,   Method: Composition-based stats.
 Identities = 14/156 (8%), Positives = 36/156 (23%), Gaps = 4/156 (2%)

Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLL 350
            L         Y +      +        NL    +   PI  +V  +G   Y N    L
Sbjct: 801 ELNTERFVLATYHNLAERRLVDRLIRHERNLLKNVLGMSPIGVWVCVNGTCRYVNAQMTL 860

Query: 351 LTK----YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
           +T     +   D           +               L       +      +   ++
Sbjct: 861 MTGLEVEHAVADIFLQPKDYWHYIRELAPEQECITFESKLKGYHGQILDVLFTAYPTFYD 920

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
            +++     +   +       +    ++ +  +   
Sbjct: 921 GQHANLCWALDITQEKAIQAELASAKLQADAANRAK 956


>gi|304311694|ref|YP_003811292.1| hypothetical protein HDN1F_20640 [gamma proteobacterium HdN1]
 gi|301797427|emb|CBL45647.1| Hypothetical protein HDN1F_20640 [gamma proteobacterium HdN1]
          Length = 1000

 Score =  331 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 94/382 (24%), Positives = 171/382 (44%), Gaps = 20/382 (5%)

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
           +      +    + +  S      +G+  ++ +G I+S N A++ L GY   D       
Sbjct: 473 EALEANERAVQNMARYRSTFNNAIEGMYRMSIDGRIVSANPAMAHLLGYDSVDA----LI 528

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----Y 554
              ++           ++  L     L+  T  + K  K + +    + +  ++      
Sbjct: 529 AAGKEAVTRCFPGGDGQLQQLAFAGKLQLETCYTGKNGKSIWVDHFSQMIRGANGLPSHI 588

Query: 555 SLTMHDISEWKQEKNKLSHA------KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
             ++ DI+E K+ +            K++A   ++ K DFLA +SHE+RTPLTAIIG+SE
Sbjct: 589 EGSLTDITERKERERAEQDREIDKLEKELATASATAKGDFLANMSHELRTPLTAIIGYSE 648

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
            + +Q           +  + I RS + +L+I+ND+LD SK+E+  + +   P++    +
Sbjct: 649 SLNDQSLSATDE---QQAVDTIIRSSHHLLNIINDILDFSKVEASIVEVENVPLNPYLLL 705

Query: 669 SEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIII 727
            +  S     A  + +     +   +P RI AD   +KQI LN+ SNA+ FT  G  + I
Sbjct: 706 KDVYSYFTQKARSQNLAFEVVYHFPLPNRIHADPTRLKQILLNLCSNALKFTKEGS-VTI 764

Query: 728 STTHTSNEEV-ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
                   ++    V DTG G++  ++ K  + + Q   S   +  GTGLGL ++K + +
Sbjct: 765 DVGWDEERKLTRFSVIDTGAGLSEEQIGKLFQSYAQAEASTARQFGGTGLGLVISKQLAE 824

Query: 787 ANMGKFYIFSTPAKGTLIEIIF 808
              G   + S P KG+   +  
Sbjct: 825 KMGGTIEVTSEPGKGSCFTVYI 846



 Score = 48.1 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/181 (10%), Positives = 43/181 (23%), Gaps = 18/181 (9%)

Query: 280 LNQYTKKQYFGTLQNNSKESFEYLSHRNHP--------SLSAYFDEGENLTPETVDKCPI 331
           L           +   S       +  +            +    +       T +    
Sbjct: 438 LPSAPIYLAATPIGILSGAVMISFALADRIKRMQKEALEANERAVQNMARYRSTFNNAIE 497

Query: 332 PFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390
             +  S  G +  ANP+   L  Y SVD +  AG  +     P    +  ++ +      
Sbjct: 498 GMYRMSIDGRIVSANPAMAHLLGYDSVDALIAAGKEAVTRCFPG--GDGQLQQLAFAGKL 555

Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450
           +     +            S+ +                  G   +  + +  +R  +  
Sbjct: 556 QLETCYTG-------KNGKSIWVDHFSQMIRGANGLPSHIEGSLTDITERKERERAEQDR 608

Query: 451 V 451
            
Sbjct: 609 E 609



 Score = 45.8 bits (107), Expect = 0.028,   Method: Composition-based stats.
 Identities = 13/170 (7%), Positives = 42/170 (24%), Gaps = 6/170 (3%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + +   G +   +  +   +G  +   +     +         +  +   L        
Sbjct: 499 MYRMSIDGRIVSANPAMAHLLGYDSVDALIAAGKEAVTRCFPGGDGQLQQ-LAFAGKLQL 557

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD-KKF 204
           +T      G +  + +D  +  I   N   S   G   +       +     +  +  K 
Sbjct: 558 ETCYTGKNGKS--IWVDHFSQMIRGANGLPSHIEG--SLTDITERKERERAEQDREIDKL 613

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254
                     +  +         ++P   +   ++  +     A  +   
Sbjct: 614 EKELATASATAKGDFLANMSHELRTPLTAIIGYSESLNDQSLSATDEQQA 663


>gi|255531848|ref|YP_003092220.1| PAS sensor protein [Pedobacter heparinus DSM 2366]
 gi|255344832|gb|ACU04158.1| PAS sensor protein [Pedobacter heparinus DSM 2366]
          Length = 1179

 Score =  331 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 127/625 (20%), Positives = 239/625 (38%), Gaps = 36/625 (5%)

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
            +I      V     +    Q                +     D++ K      L+  ++
Sbjct: 184 ADIDGFLKRVNPAFTNTLGWQEQDLLNNSFYSFIHPYDLQPTSDELKK------LSDGKN 237

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
           ++     F T      T +    T  ++ K            +L       E+     ++
Sbjct: 238 AVNFSNRFKTKKGEYRTLQWSVTTETDSQKILAIARDVTKDKNLQQKILTSESRLKSFIE 297

Query: 328 KCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
                 F +   GNL + N +      Y    +++  G    +      + N+ ++ +  
Sbjct: 298 NAQGLMFTHDLSGNLLFINNAGAHYLGYT-KQEMQSMGLFDLIPKDHHAALNDYLREIKN 356

Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
               +        + T+         +        N             +  +     ++
Sbjct: 357 KGKAQGL------MTTVHKKGN--HIIWIFNCVLENNATNKPYVICNSIDITERHNLVKE 408

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF--GYPVEDILRKPFTVFLEQN 504
           +     +L    +    G   +N     L+ +    ++F  G+  E  L      +    
Sbjct: 409 LRTRNKKLELANDIARLGNWELNLVEQKLTWSEVTRQIFEVGHDFEPSLESELLYYKPGT 468

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---YSLTMHDI 561
           T     + L   +       LE   L  T +   + +R I             S T+ DI
Sbjct: 469 TRENRFNALNAAVLHGKSWDLELELL--TAKGNAIWIRSIGVPEFLEGRCYKISGTIQDI 526

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           ++ K+ +  L  AK+ AE  +  KS+FLA +SHEIRTPL  IIGF++++   +     N 
Sbjct: 527 TKIKRMEANLISAKEDAESANKAKSEFLANMSHEIRTPLNGIIGFTDLLIKTQL----NE 582

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
              +Y + + +SGN +L+ +ND+LD SKIE+GK+ +++   +L E   E+  +++     
Sbjct: 583 TQQQYLSIVTQSGNALLNTINDILDFSKIEAGKLEMNWSKFNLYEMAEESADVIKYQVQS 642

Query: 682 KRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV--- 737
           K + +  + + ++P+ I AD   +KQI +N+L NA+ FT SG +I +     +N E+   
Sbjct: 643 KGLEMLLNISADLPKYIWADELRLKQILINLLGNAVKFTESG-EIELKVEALTNPELPEI 701

Query: 738 --ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
                VRDTG+G+   +  K    F Q   S   R  GTGLGL ++  ++     +  + 
Sbjct: 702 KYRFSVRDTGIGINPDKKLKIFDAFSQEDASTTKRYGGTGLGLTISNKLLGLMNSQLQVE 761

Query: 796 STPAKGTLIEIIFPLYDTSHPHDCI 820
           S   KG++      +   S P + I
Sbjct: 762 SVIGKGSVFYFE--IILQSEPGESI 784



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 29/206 (14%), Positives = 74/206 (35%), Gaps = 20/206 (9%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
           + K + E+     + +++ D I   + +G +   N A +   G+  +D+L   F  F+  
Sbjct: 160 EIKSKKELNHFLKLYKSSHDLICEADIDGFLKRVNPAFTNTLGWQEQDLLNNSFYSFIHP 219

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                 +  L ++        +       TK+ +  +L+  +     S        D+++
Sbjct: 220 YDLQPTSDELKKLSDGKNA--VNFSNRFKTKKGEYRTLQWSVTTETDSQKILAIARDVTK 277

Query: 564 WKQEKNKLSHAKKIAEK--ESSHKSDFLARVSHEIRTPLTAI-------IGFS-EVIKN- 612
            K  + K+  ++   +   E++    F     H++   L  I       +G++ + +++ 
Sbjct: 278 DKNLQQKILTSESRLKSFIENAQGLMFT----HDLSGNLLFINNAGAHYLGYTKQEMQSM 333

Query: 613 ---QRFGPLGNPRYIEYANYIDRSGN 635
                     +    +Y   I   G 
Sbjct: 334 GLFDLIPKDHHAALNDYLREIKNKGK 359


>gi|194334028|ref|YP_002015888.1| multi-sensor signal transduction histidine kinase [Prosthecochloris
            aestuarii DSM 271]
 gi|194311846|gb|ACF46241.1| multi-sensor signal transduction histidine kinase [Prosthecochloris
            aestuarii DSM 271]
          Length = 1139

 Score =  331 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 106/763 (13%), Positives = 232/763 (30%), Gaps = 55/763 (7%)

Query: 91   AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150
              G L+  ++      G  +  + G R  D+      D        +             
Sbjct: 382  PEGELQMANKAASDFHGLSSDTIRGKRFKDLLPSSVADAIIKNLHQVATTRKPAVILDRI 441

Query: 151  PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
              +GT       +  +          G     +          +   ++L    S+L  +
Sbjct: 442  RKDGTVYSFQSVVFPISAEGEKPFKLGISSIDLTKRENALIQLQESQRKLQALLSNLPGM 501

Query: 211  KKGHSSVEKEKYDIFSQQSPPPHLRMKNKV------SSLTEYYAHKDDVLKTEKYPLLTS 264
                 +  +   +  S  +         ++       S +   A KD +   ++      
Sbjct: 502  AYRCLNTPEWPMEFVSDGAFALTGYRPQELTDIVNRLSFSHLIASKDCLRLWQEVQDALQ 561

Query: 265  EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS----HRNHPSLSAYFDEGEN 320
            ++     + +       Q    +    + + S              +         E E 
Sbjct: 562  KKQPFSLRYELIQKTGKQIHVHEQGCGVYDRSGNLIALEGFIMNITDQVLFQKQIQEKEA 621

Query: 321  LTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
                  +  P   F+     G +   N     L   +  + +      +TL    +    
Sbjct: 622  RFRTLFEGAPDAIFLADCSTGIITGVNRKASELLGKELPEIVGK--HFTTLHWPDERHIA 679

Query: 379  NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
             A        +      +  +   +       + +  I  +      E     G   +  
Sbjct: 680  EAAFIAARQIASTADATSQPQQFNVLHKSGRKIPVEIISQKIQLGNREI--FYGTFRDIT 737

Query: 439  DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
              R  +  ++ + + L ++  +    I++ +R       N      F    E++  K   
Sbjct: 738  LRRQAEEALQAKTLLLETVTGSLPAYISMKDRNLRYTYANSYALNKFDLTPEEVKGKCDA 797

Query: 499  VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYS 555
                    ++ +    E+L       + K    +  +  ++ +      L  ++      
Sbjct: 798  DLFPHQLATLYSADDREVLETTTP-LINKEEELALPDGTVIPVLTNKTPLISNNTVKGIV 856

Query: 556  LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA----RVSHEIRTPLTAIIGFSEVIK 611
                D +E K+ + K    +      +S K + L      ++H+    LT IIGF+E+  
Sbjct: 857  CVSMDRTEQKKVEEKTKTLQTQLH--NSQKMETLGTLSGGIAHDFNNILTPIIGFTEIAI 914

Query: 612  NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
                 P  +    +  + + R+      +V  +L  S+ +  ++ +      L   V E+
Sbjct: 915  RSL--PSESETIKD-LDTVLRAARRAKKLVQQMLTFSRKDPPRLVIQP----LSPIVEES 967

Query: 672  ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP-SGGQIIISTT 730
            + L+Q    EK +            +L D   ++Q+ +N+ +NA+       G + IS  
Sbjct: 968  LDLMQPSIPEK-VSREIDIEPFQEMVLCDAAQIEQVIINLCTNALQAMDKENGTLRISLK 1026

Query: 731  HT---------------SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
                               +  +  V D+G GM+  E +K   PF     +    G+GTG
Sbjct: 1027 KKKITNKNIVMCGAIEPDKDYALFTVGDSGRGMSEEERKKMFDPFFTTKPA----GKGTG 1082

Query: 776  LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP-LYDTSHPH 817
            LGL +   +++ + G   + +    G+ I I  P L DT  P 
Sbjct: 1083 LGLSVVYGIIEEHNGAISVQTRKGSGSEITIYIPLLEDTEQPE 1125



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 10/163 (6%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           R +++ +E    +L ++ E + + I I   EG +   N+A S   G   + I  K F   
Sbjct: 353 RRSRKALENLHDELQALYEHSPNHIIICTPEGELQMANKAASDFHGLSSDTIRGKRFKDL 412

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSL 556
           L  +    +   L ++ +      +        K+  + S + ++  +           +
Sbjct: 413 LPSSVADAIIKNLHQVATTRKPAVI---LDRIRKDGTVYSFQSVVFPISAEGEKPFKLGI 469

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
           +  D+++    +N L   ++   K  +  S+        + TP
Sbjct: 470 SSIDLTKR---ENALIQLQESQRKLQALLSNLPGMAYRCLNTP 509


>gi|56460833|ref|YP_156114.1| hybrid sensor histidine kinase [Idiomarina loihiensis L2TR]
 gi|56179843|gb|AAV82565.1| Hybrid sensor histidine kinase (HisK, 2 CheY, Hpt domains)
           [Idiomarina loihiensis L2TR]
          Length = 866

 Score =  331 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 91/372 (24%), Positives = 156/372 (41%), Gaps = 18/372 (4%)

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
            +     +       +   + E  +L  NRA +  FG   E +  K         +  V+
Sbjct: 71  SLQLFEQVFNDLPTRVYWRDPELKLLGGNRAFANDFGIDPESLAGKTDAEIDSLASNDVL 130

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWK 565
                +  S                  K   +      L            + +DIS  K
Sbjct: 131 LERDRKTFSQQAPSV-NAEIELKV-SGKSQWVEHSSVPLYDDDHNIIGILGSYYDISGIK 188

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
               ++  AK+ AE+ +  K +FLA +SHEIRTP+ AI+G + +            +   
Sbjct: 189 SVAEEMEKAKETAERANQSKGEFLANMSHEIRTPINAIVGMANLCLKTEL----TQKQKR 244

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           Y   ID S   +L ++ND+LD SKI++GK+ +   P  L + ++    +    A +K + 
Sbjct: 245 YIKVIDSSSQALLGVINDILDFSKIDAGKLTVERIPFDLQDVLTSLADMFAYRAYDKDLE 304

Query: 686 IRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIIST----THTSNEEVILR 740
              +   NIP R++ D   + Q+ +N++SNAI FT  G +I ++     +   N  + + 
Sbjct: 305 FIINLPANIPTRLIGDPLRLNQVLVNLISNAIKFTEDG-EINVAVNLLDSSRDNVLLRIS 363

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V DTG+GM   +     K F Q   S   +  GTGLGL +++ ++    G   + S   +
Sbjct: 364 VTDTGIGMDEEQRANLFKAFTQADTSTTRKYGGTGLGLAISRRLILLMGGDIGVTSAAGQ 423

Query: 801 GTLI--EIIFPL 810
           G+    E+  PL
Sbjct: 424 GSTFYIEVELPL 435



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/134 (12%), Positives = 38/134 (28%), Gaps = 10/134 (7%)

Query: 50  EQSNFTDQNQESVSNTNYLDSENTFVFDP--IPRTVRFTWNIDAHGYLKEISEELPKTIG 107
            + N             +L S++  +F+        R  W  D    L   +       G
Sbjct: 53  SRRNALTAPFRQP----FLSSDSLQLFEQVFNDLPTRVYWR-DPELKLLGGNRAFANDFG 107

Query: 108 NYAFKMIGMRLCDVSDILHIDPNNHI-GDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAAL 166
                + G    ++  +   D           +Q           + G +    ++ +++
Sbjct: 108 IDPESLAGKTDAEIDSLASNDVLLERDRKTFSQQAPSVNAEIELKVSGKSQ--WVEHSSV 165

Query: 167 PIYSRNREFSGFRG 180
           P+Y  +    G  G
Sbjct: 166 PLYDDDHNIIGILG 179


>gi|219849554|ref|YP_002463987.1| multi-sensor signal transduction histidine kinase [Chloroflexus
           aggregans DSM 9485]
 gi|219543813|gb|ACL25551.1| multi-sensor signal transduction histidine kinase [Chloroflexus
           aggregans DSM 9485]
          Length = 546

 Score =  331 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 89/376 (23%), Positives = 171/376 (45%), Gaps = 23/376 (6%)

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
            E   L +++E ++DG+ II+    I + N  + +L G+  E+ + +P    L       
Sbjct: 188 REKQHLNALIEQSADGVMIIDGRWRITTFNHTMEQLTGWSREEAIGRPCAEVLGIRDAQG 247

Query: 509 MNHYLTEILSLDLRQTLEKITLGS--TKEEKLLSLRIIIKKLPFSSCYSLT----MHDIS 562
           +N  L +       +    +  G   T++ + L ++        +    L+    + DI+
Sbjct: 248 VNICLNDCPLQRHPELANPVVEGRITTRDGRELFIQNRYAPQRNALGTLLSAIANVRDIT 307

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
             K E+ + +               F++ +SHE+RTP++ I GF+E +     G     +
Sbjct: 308 AQKAEEERQNT--------------FISVISHELRTPVSIIKGFAETMLR-PDGQFTVEQ 352

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
           Y E    I    + +   + DLLD+S+I +G + L +  VSL   V E +        + 
Sbjct: 353 YREALQVIGEEADRLARQIQDLLDVSRIAAGGLRLEYSDVSLQLLVKEVVRRFAAQVGD- 411

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           RI       +++P + AD   ++Q+  N++ NA+ ++P+GG I I       E  I+ V 
Sbjct: 412 RIEFEIRVPDDMPPVYADYERLRQVFTNLIENAVKYSPNGGTIRIGARAE-GEMAIVYVA 470

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G+G+   E +   + F ++ N  +    G+GLGL + +A+V+A+ G+ ++ S   +G+
Sbjct: 471 DQGIGIPPEEQDLIFERFYRVDNRLRRDRPGSGLGLYITRAIVEAHGGRIWVESQVGRGS 530

Query: 803 LIEIIFPLYDTSHPHD 818
                 PL     P +
Sbjct: 531 RFLFTLPLSRRRLPGE 546



 Score = 44.2 bits (103), Expect = 0.094,   Method: Composition-based stats.
 Identities = 30/328 (9%), Positives = 63/328 (19%), Gaps = 14/328 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD--LLKRQNTWYGK 146
           ID    +   +  + +  G    + IG    +V  I      N   +   L+R       
Sbjct: 207 IDGRWRITTFNHTMEQLTGWSREEAIGRPCAEVLGIRDAQGVNICLNDCPLQRHPELANP 266

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSG--FRGFGIVHVNRVDNDPRALGKRLDKKF 204
                I   +     +L     Y+  R   G        V                    
Sbjct: 267 VVEGRITTRDGR---ELFIQNRYAPQRNALGTLLSAIANVRDITAQKAEEERQNTFISVI 323

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
           SH             E       Q      R   +V         +      +   +   
Sbjct: 324 SHELRTPVSIIKGFAETMLRPDGQFTVEQYREALQVIGEEADRLARQIQDLLDVSRIAAG 383

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
                        +      +       +   +          +           NL   
Sbjct: 384 GLRLEYSDVSLQLLVKEVVRRFAAQVGDRIEFEIRVPDDMPPVYADYERLRQVFTNLIEN 443

Query: 325 TVDKCPIPFFVYSHGN------LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
            V   P    +           + Y     + +   +     E    +   L   +    
Sbjct: 444 AVKYSPNGGTIRIGARAEGEMAIVYVADQGIGIPPEEQDLIFERFYRVDNRLRRDRPGSG 503

Query: 379 NAIKPVM-LYRSDRTCIAASARLHTIQW 405
             +     +  +    I   +++     
Sbjct: 504 LGLYITRAIVEAHGGRIWVESQVGRGSR 531


>gi|196231913|ref|ZP_03130769.1| PAS/PAC sensor signal transduction histidine kinase [Chthoniobacter
           flavus Ellin428]
 gi|196224035|gb|EDY18549.1| PAS/PAC sensor signal transduction histidine kinase [Chthoniobacter
           flavus Ellin428]
          Length = 421

 Score =  331 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 75/373 (20%), Positives = 154/373 (41%), Gaps = 25/373 (6%)

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
           +     R++  E   L +IL +  +G+ +++    +   N +   LF    + + +    
Sbjct: 68  EQDKLHREIHDEAFNLRTILASMEEGVMVVDTHHNLRLVNPSFLSLFDLKCDPVGQSVLR 127

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK-KLPFSSCYSLT 557
                   +     +T  L     Q  +      T +++  ++  +   +          
Sbjct: 128 TL----RETAFEEIITAALRTGQPQRGDVE---RTSDKRHFAVHAVPVKEFSGGPGIVAI 180

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
           + DI+  +Q +                + +F+A VSHE+RTPL+   G+ E + +    P
Sbjct: 181 IRDITRLRQLEEV--------------RREFVANVSHELRTPLSIFHGYLENLLDAPSMP 226

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
             +    E    + +    +  ++ DLL ++++ES +  +    + L   +         
Sbjct: 227 RKD--QTEIFEILRKHSRRLNALLEDLLTLARLESRQEKIACVSMKLPALLRSIGGDWSQ 284

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737
               K++ ++    +++PRI AD + ++Q+  N+L NA+ +T  GG I +      N  V
Sbjct: 285 KLANKKLALQIEAHDDLPRISADPQRLEQVLHNLLENAVKYTEPGGNIFLRAAAQ-NGHV 343

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
            +RV D+G G+   +L    + F +   ++     GTGLGL + K ++  + G     S 
Sbjct: 344 EVRVEDSGQGIPPADLPHIFERFYRADKARSREQGGTGLGLSIVKHIIQLHGGTVAAESK 403

Query: 798 PAKGTLIEIIFPL 810
             KGT I +  PL
Sbjct: 404 YGKGTTIILHLPL 416


>gi|167916549|ref|ZP_02503640.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei 112]
          Length = 771

 Score =  331 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 104/519 (20%), Positives = 180/519 (34%), Gaps = 27/519 (5%)

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEI 362
           S R + +L              +        V   HG L Y NPS   L        +  
Sbjct: 111 SRRANDALRRREAAARRYYETLLQSLTQGVVVSDRHGMLTYMNPSAAALIGC-DATAVRG 169

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
                                +          +       +  +    + +        +
Sbjct: 170 LPFRDVYRAYDGRGARVRASALEHVLRSGRSASVEGH--WLAPHDGQRVPIAEAASPLVD 227

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
              +      I  +    R      ++    L  ++EA+ D I  +     I S N A  
Sbjct: 228 SAGDMTGAVLIVRDISIERERSAASQM----LRRLVEASPDAIVGVGSNRRITSWNPAAR 283

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
           ++FGY           + +           L E +            L   ++   +   
Sbjct: 284 RMFGYDEHAARGCDVAMLIAPRWLRNHP--LPESVPDMREPIENVDVLCVRQDGGRMRAT 341

Query: 543 IIIKKLPFSSCYSL----TMHDISEWKQEKNK-------LSHAKKIAEKESSHKSDFLAR 591
           +    +       +    T+ D  E ++ + +          A++ A+  +  K + LA 
Sbjct: 342 MSASPVFDERDACIALSLTLRDTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLAT 401

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           VSHE+RTPL  I G+ EV++N   G L      +  + IDRS   +  +V D+LD S + 
Sbjct: 402 VSHELRTPLNVIYGWIEVLRNPVDGAL----QQQAIDAIDRSARSLSRMVGDILDASSLA 457

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
           +GK+ L   PV L   V++    +   A    I +    A     +  D   ++Q+  N+
Sbjct: 458 TGKLRLDAMPVDLVRIVNDVTGALGAAAQADGIALSVECALATCIVSGDGERLRQMLSNL 517

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           LSNA  FTP GG++ +S       +  L V DTG G++   L    + F +   +     
Sbjct: 518 LSNAFKFTPRGGRVTVSLERHD-AQAKLTVADTGQGISPEFLPHVFEAFRRAEGAPASPR 576

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFP 809
            G GLGL + + + + + GK    S    +GT   I  P
Sbjct: 577 RGLGLGLSIVRHIAELHGGKVEAASAGKNRGTTFAITLP 615



 Score = 65.4 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/225 (12%), Positives = 54/225 (24%), Gaps = 5/225 (2%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK---RQNTWYGK 146
           D HG L  ++      IG  A  + G+   DV               L+   R       
Sbjct: 144 DRHGMLTYMNPSAAALIGCDATAVRGLPFRDVYRAYDGRGARVRASALEHVLRSGRSASV 203

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
              W        VPI  AA P+     + +G     IV    ++ +  A  + L +    
Sbjct: 204 EGHWLAPHDGQRVPIAEAASPLVDSAGDMTGA--VLIVRDISIERERSAASQMLRRLVEA 261

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
             +   G  S  +      + +    +     +   +    A +          +    E
Sbjct: 262 SPDAIVGVGSNRRITSWNPAARRMFGYDEHAARGCDVAMLIAPRWLRNHPLPESVPDMRE 321

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
                       +  +         + +                 
Sbjct: 322 PIENVDVLCVRQDGGRMRATMSASPVFDERDACIALSLTLRDTGE 366


>gi|220908951|ref|YP_002484262.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219865562|gb|ACL45901.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 1428

 Score =  331 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 101/746 (13%), Positives = 238/746 (31%), Gaps = 62/746 (8%)

Query: 95   LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR---QNTWYGKTTLWP 151
             +  S    K  G    ++I  +L  +S +   D    +  +      +     +   + 
Sbjct: 574  YEYFSAGCEKLFGYKCQELIADKLLWMSRVFPPDRETILMPMFDTLLIEGNTTAEYRFYH 633

Query: 152  IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
             +G+  ++    AA            +R   +              + L+   ++  E  
Sbjct: 634  RDGSLRWISSAYAA-----EQIAPDCWRITTLCQDITDRKQAELQLRELNNALTNTVEGI 688

Query: 212  KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271
                      +   S      +   +             D       Y  + S   +   
Sbjct: 689  SRLDPQGHYTFVNQSYADMMGYTAAEMLGQHWHITVYPDDREAALAAYEQMRSWGKA-KL 747

Query: 272  QEDFHTINLNQYTKKQYFGTLQNNSKESF-----------EYLSHRNHPSLSAYFDEGEN 320
            +      +   + ++     + ++ +              +         +     E E 
Sbjct: 748  KSRGLRKDGAVFHRRIVMVAVYDDQESFSGHYCFMEDVTDKMQLKTERAKVELALRESEE 807

Query: 321  LTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
                     PI        GN  Y N  +  ++     D +   G +  +    + + + 
Sbjct: 808  RFRTLSAAAPIGICQADLDGNCLYTNARWQEMSGLSFEDSLGQ-GWVQAIYPDDRSTLSA 866

Query: 380  AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
            A    +    D            +         ++       +   E +     + +  +
Sbjct: 867  AWAAYVRGECD------HLPDFRLLTPEGKIRWVSTCVGAIKSSTGEIIGYVSTDEDITE 920

Query: 440  TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
             +  ++ ++    +  +IL+ +   I +++ +   L  NR  ++      ED++ K    
Sbjct: 921  RKQAEQALQDSQQRFQTILDNSPTAIYLLDPQNNFLLANRVCAEHVSLTPEDLVGKSIYE 980

Query: 500  FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY--SLT 557
            F  +    V       +        LE++      +++         +    + Y     
Sbjct: 981  FWPREIADVFAANNQTVFETGQLLQLEEVVPHLDGQQRTYITVKFPLRDLMGNPYAICGI 1040

Query: 558  MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
              DISE K+ +++   A+++            + ++H++   LT I+  S++++ Q    
Sbjct: 1041 STDISETKELESQFLRAQRL-----ESIGTLASGIAHDLNNMLTPILVSSQLLQRQ---- 1091

Query: 618  LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
            L   R  E    ++ +     D++  +L  ++   GK      P+ +   ++E   + + 
Sbjct: 1092 LPEGRPQELLKIMEANARRGADLIRQVLTFARGTEGK----RMPLQIKHLLTEIQQICER 1147

Query: 678  YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT------- 730
                K I I      ++  I  D   + Q+ +N+  NA    P GGQ+ +          
Sbjct: 1148 TFP-KSIRIALDIPADLAMISVDPTQLHQVLMNLCVNARDAMPEGGQLNLRAADFYADQT 1206

Query: 731  -------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
                         V++ V DTG+GM +  LE+   PF          G+GTGLGL + + 
Sbjct: 1207 YRQMNLEAQVGAYVVITVEDTGMGMDSDVLERIFDPFFTTKG----VGQGTGLGLSVVQG 1262

Query: 784  MVDANMGKFYIFSTPAKGTLIEIIFP 809
            ++ ++ G   + S+  +GT  ++  P
Sbjct: 1263 IIRSHSGFIKVNSSIGQGTQFQVYLP 1288



 Score =  115 bits (289), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 48/491 (9%), Positives = 114/491 (23%), Gaps = 37/491 (7%)

Query: 112 KMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSR 171
            + GM    +  +  ++ ++ +  LL +     G         +    P   +A     R
Sbjct: 98  ALSGMAEHQIHHLPVLNQDDRLIGLLTQDALLQGLARKPQPIPSLNPSPPAQSAQTYPDR 157

Query: 172 NREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231
                G           V                 + + +  +         +       
Sbjct: 158 -----GM-------DKDVLEQQWKALFDHALDAILIADDQGCYLDANPAACQLLGLSKAE 205

Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291
                    +               +   L   E                          
Sbjct: 206 LLSSCVADFADPAVEITQLWQKFIRQGQML--GEFRLRCPDGTVRQTEFAAIANFIPGRH 263

Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFL 349
           L      S                   E       +     FF+ S       Y +P+  
Sbjct: 264 LSILRDISARVELEAERKRTEVNLQASEAKFRLLTEHLRDAFFICSPNLERYLYISPAVE 323

Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
            +    + +  +            ++   +    +     D            I+ + E 
Sbjct: 324 KIWGITTTEIYQNPRSWL-----EQVHPEDWDYFIANTSLDGHFEDYDLEYRIIRPDGE- 377

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469
              +    +   +   +     G+  +  D +  + ++      L SI +     + +I+
Sbjct: 378 VRWVHVRAYPLTSTQGQIEQMVGVCEDISDRKKAELELIEREAFLSSIYDGADQAVFVID 437

Query: 470 ----REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
                +   ++ NR   +  G   +++  K         T +         L +      
Sbjct: 438 VTESHDFYYVAFNRLAEQYAGMSSQEVAGKTPEQAFGPVTGAAFRQNYERCLQIGTLSYE 497

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKE 581
           E++ L +      +     +  L            T  DIS+ KQ +  L  +++     
Sbjct: 498 EEVVLATH----TVWTLTTLSPLRNQQGAIYRIVGTAVDISDRKQLELSLQASERKL--- 550

Query: 582 SSHKSDFLARV 592
           S      LA +
Sbjct: 551 SQILDRTLASI 561



 Score =  114 bits (286), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 62/525 (11%), Positives = 127/525 (24%), Gaps = 42/525 (8%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D  G   + +    + +G    +++   + D +D         +     RQ    G+  L
Sbjct: 183 DDQGCYLDANPAACQLLGLSKAELLSSCVADFADP--AVEITQLWQKFIRQGQMLGEFRL 240

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGF-GIVHVNRVDNDPRALGKRLDKKFSHLH 208
              +GT      + AA+  +   R  S  R     V +           +  + KF  L 
Sbjct: 241 RCPDGTVRQT--EFAAIANFIPGRHLSILRDISARVELEAERKRTEVNLQASEAKFRLLT 298

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPH------LRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
           E  +    +     + +   SP              +         H +D         L
Sbjct: 299 EHLRDAFFICSPNLERYLYISPAVEKIWGITTTEIYQNPRSWLEQVHPEDWDYFIANTSL 358

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS----HRNHPSLSAYFDEG 318
                    +      +            L +   +  + +       +         E 
Sbjct: 359 DGHFEDYDLEYRIIRPDGEVRWVHVRAYPLTSTQGQIEQMVGVCEDISDRKKAELELIER 418

Query: 319 ENLTPETVDKCPIPFFVYS-----HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
           E       D      FV              N          S +              P
Sbjct: 419 EAFLSSIYDGADQAVFVIDVTESHDFYYVAFNRLAEQYAGMSSQEVAGKT---------P 469

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
           + +             +R     +           +++          NQ        G 
Sbjct: 470 EQAFGPVTGAAFRQNYERCLQIGTLSYEEEVVLATHTVWTLTTLSPLRNQQGAIYRIVGT 529

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII----NREGIILSTNRAVSKLFGYPV 489
             +  D +  +  ++    +L  IL+ T   I I     NR+      +    KLFGY  
Sbjct: 530 AVDISDRKQLELSLQASERKLSQILDRTLASITIFRIFANRDWEYEYFSAGCEKLFGYKC 589

Query: 490 EDILRKPFTVF---LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
           ++++             +  +++      +L                ++  L  +     
Sbjct: 590 QELIADKLLWMSRVFPPDRETILMPMFDTLLIEGNTT---AEYRFYHRDGSLRWISSAYA 646

Query: 547 KL---PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
                P     +    DI++ KQ + +L              S  
Sbjct: 647 AEQIAPDCWRITTLCQDITDRKQAELQLRELNNALTNTVEGISRL 691



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 52/471 (11%), Positives = 123/471 (26%), Gaps = 41/471 (8%)

Query: 88   NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
             +D  G+   +++     +G  A +M+G            +      + ++       K+
Sbjct: 690  RLDPQGHYTFVNQSYADMMGYTAAEMLGQHWHITVYPDDREAALAAYEQMRSWGKAKLKS 749

Query: 148  TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF-----GIVHVNRVDNDPRALGKRLDK 202
                 +G   +  I +  + +Y     FSG   F       + +           +  ++
Sbjct: 750  RGLRKDGAVFHRRIVM--VAVYDDQESFSGHYCFMEDVTDKMQLKTERAKVELALRESEE 807

Query: 203  KFSHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDV--LKTE 257
            +F  L               +     +       L  ++ +        + DD   L   
Sbjct: 808  RFRTLSAAAPIGICQADLDGNCLYTNARWQEMSGLSFEDSLGQGWVQAIYPDDRSTLSAA 867

Query: 258  KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
                +  E   LP      T            G +++++ E   Y+S     +     ++
Sbjct: 868  WAAYVRGECDHLP-DFRLLTPEGKIRWVSTCVGAIKSSTGEIIGYVSTDEDITERKQAEQ 926

Query: 318  G----ENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                 +      +D  P   ++     N   AN            D +  +         
Sbjct: 927  ALQDSQQRFQTILDNSPTAIYLLDPQNNFLLANRVCAEHVSLTPEDLVGKS-------IY 979

Query: 373  PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
                   A       ++             +            + F   +         G
Sbjct: 980  EFWPREIADVFAANNQTVFETGQLLQLEEVVPHLDGQQRTYITVKFPLRDLMGNPYAICG 1039

Query: 433  IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
            I  +  +T+  + +  +   +L SI    + GIA  +   ++                 +
Sbjct: 1040 ISTDISETKELESQF-LRAQRLESI-GTLASGIA-HDLNNMLT-------------PILV 1083

Query: 493  LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
              +     L +  P  +   +            + +T     E K + L+I
Sbjct: 1084 SSQLLQRQLPEGRPQELLKIMEANARRGADLIRQVLTFARGTEGKRMPLQI 1134



 Score = 46.9 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 30/303 (9%), Positives = 78/303 (25%), Gaps = 12/303 (3%)

Query: 55   TDQNQESVSNTNYLDSENTFVFDPIPRTVRF-TWNIDAHGYLKEISEELPKTIGNYAFKM 113
            TD++            ++   F  I        + +D        +    + +      +
Sbjct: 914  TDEDITERKQAEQALQDSQQRFQTILDNSPTAIYLLDPQNNFLLANRVCAEHVSLTPEDL 973

Query: 114  IGMRLCDVSDILHIDPNNHIGD-LLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172
            +G  + +       D        + +       +  +  ++G      I +   P+    
Sbjct: 974  VGKSIYEFWPREIADVFAANNQTVFETGQLLQLEEVVPHLDG-QQRTYITVK-FPLRDLM 1031

Query: 173  REFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP-- 230
                 +   GI        +  +   R  +  S           +      I        
Sbjct: 1032 GNP--YAICGISTDISETKELESQFLRAQRLESIGTLASGIAHDLNNMLTPILVSSQLLQ 1089

Query: 231  --PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288
               P  R +  +  +        D+++        +E   +P Q       + Q  ++ +
Sbjct: 1090 RQLPEGRPQELLKIMEANARRGADLIRQVLTFARGTEGKRMPLQIKHLLTEIQQICERTF 1149

Query: 289  FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSF 348
              +++       +       P+         NL     D  P    +      FYA+ ++
Sbjct: 1150 PKSIRIALDIPADLAMISVDPTQ--LHQVLMNLCVNARDAMPEGGQLNLRAADFYADQTY 1207

Query: 349  LLL 351
              +
Sbjct: 1208 RQM 1210


>gi|260574258|ref|ZP_05842263.1| histidine kinase [Rhodobacter sp. SW2]
 gi|259023724|gb|EEW27015.1| histidine kinase [Rhodobacter sp. SW2]
          Length = 854

 Score =  331 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 119/604 (19%), Positives = 240/604 (39%), Gaps = 57/604 (9%)

Query: 235 RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES-SLPEQEDFHTINLNQYTKKQYFGTLQ 293
            +  +++         + +L+ +   L  + E  +L  +     I   +   K      +
Sbjct: 2   EIAERLAKERRARLAAERLLEQKSRELFAANEKLALHARSLSDQIVEQRQVVKSALSEAE 61

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFL--- 349
               ++  +    +           E    ++++     F V+     L  AN ++L   
Sbjct: 62  VLKGQNNRF--MHDLERAHTAAVVAERRLWDSINTIRDGFAVFDTNKKLVTANRAYLASF 119

Query: 350 ---LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
               L    S + I   G  + L+D    + ++    ++    D        +     W 
Sbjct: 120 EGHKLVPGISYEAILRLGAETGLVDIGGRNLDDWCAEMLARWDDDPIEPVVLQFANGTW- 178

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
                 +  +     +     +  N                  E M++ + +EA  DG  
Sbjct: 179 ------VRLVDHRSRDGDMVCLALNIT----------------EQMRIWAAIEAIPDGFV 216

Query: 467 IINREGIILSTNRAVSKLF---------GYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
           + +RE  +++ N+    L+         G   E ILR         +   V   +L E L
Sbjct: 217 LFDREDRLMTCNQRYRDLYPESAEAMVPGASYESILRYGLEQGAYADALGVEEDWLKERL 276

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI 577
           +    ++ +        + + L +   I++      +     D++  ++++  L  A+  
Sbjct: 277 ARRRLKSDQFE--QQMADGRWLRV---IEQETPDGGHVGLRVDVTAAREQQTLLETARMA 331

Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
           AE  +  KS FLA +SHEIRTP+  ++G +E++ +             +A+ I  SG  +
Sbjct: 332 AEAANRAKSAFLANMSHEIRTPMNGVVGMAELLCDTNL----TEEQRLFADTIRSSGEAL 387

Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-R 696
           L I+ND+LD SKIE+ ++ LH EP  L+  + E   L+Q  A  K + +   F   +P R
Sbjct: 388 LVIINDILDYSKIEAERLTLHPEPFDLERTIHEVTMLLQPRARAKGLDLMIDFDMFLPTR 447

Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN---EEVILRVRDTGVGMTNYEL 753
            + D   ++Q+  N++ NA+ FT +G  ++      +    +++ + V DTG+G+    L
Sbjct: 448 YIGDAGRLRQVLTNLMGNAVKFTETGHVLVRVVGIEAEPGSQQLHITVEDTGIGIAPEHL 507

Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL--IEIIFPLY 811
           +     F Q+ +    + EGTGLGL + + +V+   G  ++ S P KG+     +  P+ 
Sbjct: 508 DHIFGEFNQVESETNRKFEGTGLGLAITQRLVERMGGAVWVDSEPGKGSCFGFRLALPVA 567

Query: 812 DTSH 815
           +   
Sbjct: 568 EEDA 571


>gi|187919994|ref|YP_001889025.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia phytofirmans
           PsJN]
 gi|187718432|gb|ACD19655.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia phytofirmans
           PsJN]
          Length = 776

 Score =  331 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 117/660 (17%), Positives = 226/660 (34%), Gaps = 24/660 (3%)

Query: 166 LPIYSRNREFSGFRGFGIVHVNRVDNDPR-ALGKRLDKKFSHLHEIKKGHSSVEKEKYDI 224
            P+ S +  F       +V           A         S      +    +      +
Sbjct: 6   RPLPSADALFEHAACGLLVTDADGRILRVNATFCGWLGYESAELTGARHIQDLLSAGGKV 65

Query: 225 FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYT 284
           F Q    P L+M+  V+ +    AH+D        P+L +          +  + +    
Sbjct: 66  FYQTHWAPLLQMQGSVAEVKLNMAHRDG----HMVPMLLNAVRHCHGDVTYLEVAVLIVA 121

Query: 285 KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYA 344
            +  +   +          S   H        E  ++    +    +  + +   +  + 
Sbjct: 122 DRHKYEQ-ELLLARRNAEASVAAHQRAQRELQESRDVLSLAMRGARMGAWSHEPKSGKFW 180

Query: 345 -NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403
            +     L  Y      +  GG   L+    L      + V           A  R    
Sbjct: 181 WSRELEALAGYAEGRFADTPGGFFELIHPGDL--IALNEAVDHAVESGDDYVAEFRFLHA 238

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
             +      M        ++  E +   G+  +  + +  +  +  +     +I E  SD
Sbjct: 239 SGD---WCWMEGRGRATYDRHGEPLTIYGLGIDITERKEAQTVLLRQ----AAIFEHLSD 291

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
            I I +  G I   N    ++ GY + +IL KP  +FL       +       L+ +   
Sbjct: 292 AIVITDLRGNITDFNVGGERMLGYRMREILGKPVALFLPPEETLNIRREALAALAAEGTW 351

Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKE 581
             E   +       +    I                  DI+  +  + +L+       K 
Sbjct: 352 RGELPFVRRDGSRGVCETVIKPLANARGDIYGAVSINRDITGRRHAEQQLTRLNLELSKA 411

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
              K +FLA ++HE+R PL  +    E+++ + F         +  +   R    +  +V
Sbjct: 412 DRRKDEFLATLAHELRNPLAPMRNVLEILRLKEFADPQLSWSRDVFD---RQLQHMTHLV 468

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701
           +DLL++S+I  GK+ L  + + L  A+  A+   +         +  +       ++AD 
Sbjct: 469 DDLLEVSRITQGKLELRKQRLELARAMQSAMEAARPTVQASSHHLSVTLPREPLYLVADP 528

Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761
             + Q+ LN+L+NA  +TP GG I +       +E ++ VRD+G+G+    L    + F 
Sbjct: 529 TRLSQMILNLLNNAAKYTPPGGTISL-AAERDGDEAVIVVRDSGIGIPAEHLNSVFEMFS 587

Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFPLYDTS-HPHDC 819
           Q+  +      G G+GL L + + + + G    FS  P KG+   I  P+   +  P D 
Sbjct: 588 QLAPALDRSQGGLGIGLALVRGLAELHGGTVAAFSDGPGKGSEFVIRLPVTKAAMQPSDS 647



 Score = 85.8 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 46/391 (11%), Positives = 103/391 (26%), Gaps = 32/391 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIG-MRLCD-VSDILHIDPNNHIGDLLKRQNTWYGK 146
            DA G +  ++      +G  + ++ G   + D +S    +    H   LL+ Q +    
Sbjct: 25  TDADGRILRVNATFCGWLGYESAELTGARHIQDLLSAGGKVFYQTHWAPLLQMQGSVAEV 84

Query: 147 TTLW-PIEG-------------TNLYVPIDLAALPIYSR---NREFSGFRGFGIVHVNRV 189
                  +G                   +++A L +  R    +E    R      V   
Sbjct: 85  KLNMAHRDGHMVPMLLNAVRHCHGDVTYLEVAVLIVADRHKYEQELLLARRNAEASVAAH 144

Query: 190 DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL-----RMKNKVSSLT 244
               R L +  D     +   + G  S E +    +  +           R  +      
Sbjct: 145 QRAQRELQESRDVLSLAMRGARMGAWSHEPKSGKFWWSRELEALAGYAEGRFADTPGGFF 204

Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
           E     D +   E              +  F   + +    +       +   E      
Sbjct: 205 ELIHPGDLIALNEAVDHAVESGDDYVAEFRFLHASGDWCWMEGRGRATYDRHGEPLTIYG 264

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIA 363
                +                +       +    GN+   N     +  Y+  + +   
Sbjct: 265 LGIDITERKEAQTVLLRQAAIFEHLSDAIVITDLRGNITDFNVGGERMLGYRMREILGKP 324

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
                L   P+ + N   + +    ++ T       L  ++ +    +  T I    AN 
Sbjct: 325 V---ALFLPPEETLNIRREALAALAAEGT---WRGELPFVRRDGSRGVCETVI-KPLANA 377

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
             +      I  +    R  ++++    ++L
Sbjct: 378 RGDIYGAVSINRDITGRRHAEQQLTRLNLEL 408


>gi|114848882|gb|ABI83649.1| chromatic acclimation sensor [Synechocystis sp. PCC 6803]
          Length = 753

 Score =  331 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 101/534 (18%), Positives = 206/534 (38%), Gaps = 30/534 (5%)

Query: 286 KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYA 344
           +    T Q  +      +         A      +     +   P   F +     +   
Sbjct: 230 RVEKRTQQLAATNQSLRMEISERQKTEAALRHTNHTLQSLIAASPRGIFTLNLADQIQIW 289

Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
           NP+   +  +   + I        L     L D    K  +L       +         Q
Sbjct: 290 NPTAERIFGWTETEIIAHP---ELLTSNILLEDYQQFKQKVLSGMVSPSLELKC-----Q 341

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
               + + +        +          +  +  + +    ++ +    L S++  T+D 
Sbjct: 342 KKDGSWIEIVLSAAPLLDSEENIAGLVAVVADITEQKRQAEQIRL----LQSVVVNTNDA 397

Query: 465 IAII------NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
           + I       +    IL  N A +K+ GY  E++L K   V     T       + + +S
Sbjct: 398 VVITEAEPIDDPGPRILYVNEAFTKITGYTAEEMLGKTPRVLQGPKTSRTELDRVRQAIS 457

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHA 574
                T+    +   K+     +   +  +   + +         D++E ++ +      
Sbjct: 458 QWQSVTV--EVINYRKDGSEFWVEFSLVPVANKTGFYTHWIAVQRDVTERRRTEEVRLAL 515

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
           ++  ++ S  K+ F +  SHE RTPL+  +  +++++N     L   +     + I  S 
Sbjct: 516 ERE-KELSRLKTRFFSMASHEFRTPLSTALAAAQLLENSEVAWLDPDKRSRNLHRIQNSV 574

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
             ++ +++D+L I++ E+GK+  +   + L     + I  +QL  ++ +       +   
Sbjct: 575 KNMVQLLDDILIINRAEAGKLEFNPNWLDLKLLFQQFIEEIQLSVSD-QYYFDFICSAQD 633

Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELE 754
            + L D R V+ I  N+LSNAI ++P GGQI I+ +   +E++I  V D G+G++  + +
Sbjct: 634 TKALVDERLVRSILSNLLSNAIKYSPGGGQIKIALSL-DSEQIIFEVTDQGIGISPEDQK 692

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           +  +PF +  N       GTGLGL +AK  VD + G   + S   +GT + I  
Sbjct: 693 QIFEPFHRGKN--VRNITGTGLGLMVAKKCVDLHSGSILLKSAVDQGTTVTICL 744



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 16/157 (10%), Positives = 50/157 (31%), Gaps = 5/157 (3%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGKTT 148
           D    +  ++E   K  G  A +M+G     +          + +   + +  +   +  
Sbjct: 408 DPGPRILYVNEAFTKITGYTAEEMLGKTPRVLQGPKTSRTELDRVRQAISQWQSVTVEVI 467

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
            +  +G+     ++ + +P+ ++   ++ +    +            +   L+++     
Sbjct: 468 NYRKDGS--EFWVEFSLVPVANKTGFYTHW--IAVQRDVTERRRTEEVRLALEREKELSR 523

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE 245
              +  S    E     S       L   ++V+ L  
Sbjct: 524 LKTRFFSMASHEFRTPLSTALAAAQLLENSEVAWLDP 560



 Score = 58.1 bits (139), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 22/247 (8%), Positives = 73/247 (29%), Gaps = 10/247 (4%)

Query: 84  RFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTW 143
           R  + ++    ++  +    +  G    ++I       S+IL  D       +L    + 
Sbjct: 275 RGIFTLNLADQIQIWNPTAERIFGWTETEIIAHPELLTSNILLEDYQQFKQKVLSGMVSP 334

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +      +G+  ++ I L+A P+       +G     +V             + L   
Sbjct: 335 SLELKCQKKDGS--WIEIVLSAAPLLDSEENIAGL--VAVVADITEQKRQAEQIRLLQSV 390

Query: 204 FSHLHEIKKGHSS--VEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKD--DVLKTE 257
             + ++      +  ++     I         +      ++   T            + +
Sbjct: 391 VVNTNDAVVITEAEPIDDPGPRILYVNEAFTKITGYTAEEMLGKTPRVLQGPKTSRTELD 450

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
           +     S+  S+  +   +  + +++  +     + N +     +++ +   +     +E
Sbjct: 451 RVRQAISQWQSVTVEVINYRKDGSEFWVEFSLVPVANKTGFYTHWIAVQRDVTERRRTEE 510

Query: 318 GENLTPE 324
                  
Sbjct: 511 VRLALER 517


>gi|254192371|ref|ZP_04898810.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei S13]
 gi|169649129|gb|EDS81822.1| sensory box histidine kinase/response regulator [Burkholderia
           pseudomallei S13]
          Length = 769

 Score =  331 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 104/519 (20%), Positives = 180/519 (34%), Gaps = 27/519 (5%)

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEI 362
           S R + +L              +        V   HG L Y NPS   L        +  
Sbjct: 111 SRRANDALRRREAAARRYYETLLQSLTQGVVVSDRHGMLTYMNPSAAALIGC-DATAVRG 169

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
                                +          +       +  +    + +        +
Sbjct: 170 LPFRDVYRAYDGRGARVRASALEHVLRSGRSASVEGH--WLAPHDGQRVPIAEAASPLVD 227

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
              +      I  +    R      ++    L  ++EA+ D I  +     I S N A  
Sbjct: 228 SAGDMTGAVLIVRDISIERERSAASQM----LRRLVEASPDAIVGVGSNRRITSWNPAAR 283

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
           ++FGY           + +           L E +            L   ++   +   
Sbjct: 284 RMFGYDEHAARGCDVAMLIVPRWLRNHP--LPESVPDMREPIENVDVLCVRQDGGRMRAT 341

Query: 543 IIIKKLPFSSCYSL----TMHDISEWKQEKNK-------LSHAKKIAEKESSHKSDFLAR 591
           +    +       +    T+ D  E ++ + +          A++ A+  +  K + LA 
Sbjct: 342 MSASPVFDERDACIALSLTLRDTGEQRRRERRVHRSLRGARDARRQADTSNRLKDELLAT 401

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           VSHE+RTPL  I G+ EV++N   G L      +  + IDRS   +  +V D+LD S + 
Sbjct: 402 VSHELRTPLNVIYGWIEVLRNPVDGAL----QQQAIDAIDRSARSLSRMVGDILDASSLA 457

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
           +GK+ L   PV L   V++    +   A    I +    A     +  D   ++Q+  N+
Sbjct: 458 TGKLRLDAMPVDLVRIVNDVTGALGAAAQADGIALSVECALATCIVSGDGERLRQMLSNL 517

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           LSNA  FTP GG++ +S       +  L V DTG G++   L    + F +   +     
Sbjct: 518 LSNAFKFTPRGGRVTVSLERHD-AQAKLTVADTGQGISPEFLPHVFEAFRRAEGAPASPR 576

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFP 809
            G GLGL + + + + + GK    S    +GT   I  P
Sbjct: 577 RGLGLGLSIVRHIAELHGGKVEAASAGKNRGTTFAITLP 615



 Score = 64.7 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 27/225 (12%), Positives = 53/225 (23%), Gaps = 5/225 (2%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK---RQNTWYGK 146
           D HG L  ++      IG  A  + G+   DV               L+   R       
Sbjct: 144 DRHGMLTYMNPSAAALIGCDATAVRGLPFRDVYRAYDGRGARVRASALEHVLRSGRSASV 203

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
              W        VPI  AA P+     + +G     IV    ++ +  A  + L +    
Sbjct: 204 EGHWLAPHDGQRVPIAEAASPLVDSAGDMTGA--VLIVRDISIERERSAASQMLRRLVEA 261

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
             +   G  S  +      + +    +     +   +      +          +    E
Sbjct: 262 SPDAIVGVGSNRRITSWNPAARRMFGYDEHAARGCDVAMLIVPRWLRNHPLPESVPDMRE 321

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
                       +  +         + +                 
Sbjct: 322 PIENVDVLCVRQDGGRMRATMSASPVFDERDACIALSLTLRDTGE 366


>gi|320120642|gb|EFE27962.2| sensory box histidine kinase YycG [Filifactor alocis ATCC 35896]
          Length = 602

 Score =  331 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 80/369 (21%), Positives = 157/369 (42%), Gaps = 22/369 (5%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE--DILRKPFTVFLEQ 503
           ++  E  +L +I+E   DG+  I+++G I+  N  V KL    +E      + F      
Sbjct: 251 EISSEQDKLNAIIEHMEDGLIAIDQQGKIIHYNIVVEKLLDISMENKQYFDQIFLPMQNN 310

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
            +   +    +E+                               L     Y +   DI+E
Sbjct: 311 LSLKRIVQQNSEMNEGMKPSEFTIEINSRILSVSSALFSDTSNTLT---GYVVLFQDITE 367

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            ++                  + +F+A VSHE++TP+T I  +SE + +           
Sbjct: 368 HERL--------------DHMRKEFVANVSHELKTPITTIRTYSETLLDGAL--KDPAIA 411

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            ++   I +  + +  ++ DLL +S I+  K   +F+   ++  + ++I  ++LY   K 
Sbjct: 412 KKFMEVIVKESDRMTSLIRDLLQLSHIDFKKETWNFDYTDINTLIQDSIDKMELYYQTKH 471

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
             + ++      +I  D   ++Q+ +NILSNAI +T   G+I +S   +    + + + D
Sbjct: 472 QTLVSNLLGQSRQIWVDKTKMEQVIINILSNAIKYTEENGKISLSLFVSE-GILDIVIED 530

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
            G+G+   ++E     F ++   +  +  GTGLGL +AK +V+ + G   + S   KGT+
Sbjct: 531 NGIGIPKEDVEHIFDRFYRVDKGRSRQQGGTGLGLSIAKHIVEEHGGSISVRSDFGKGTV 590

Query: 804 IEIIFPLYD 812
             I  P+  
Sbjct: 591 FTISLPIEP 599


>gi|300854424|ref|YP_003779408.1| putative phosphate regulon sensor protein [Clostridium ljungdahlii
           DSM 13528]
 gi|300434539|gb|ADK14306.1| predicted phosphate regulon sensor protein [Clostridium ljungdahlii
           DSM 13528]
          Length = 574

 Score =  331 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 88/360 (24%), Positives = 158/360 (43%), Gaps = 30/360 (8%)

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
             +L +IL++   G+  ++ +  I+  N    K+FG   + I         +     V  
Sbjct: 236 QNKLEAILKSMDSGVIAVDTKYNIIMINPYAKKIFGIKKDIIGESLIDNIRDFELEDVFK 295

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570
               +   + +    E+     T           I            + DI++ K+ +  
Sbjct: 296 SMEDDYREIKILWPRERELRIKTA---------YIINSSKKIGKVAVIQDITDIKKLE-- 344

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
                       + +S F+A VSHE++TPLT+I GF+E +K             ++ N I
Sbjct: 345 ------------NMRSQFVANVSHELKTPLTSIKGFAETLK----YVDDVENKNKFLNII 388

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
           +   + +  ++ND+L +S IES  ++   E V +D+ V +   +++  A +K I I    
Sbjct: 389 NDEADRLTRLINDILTLSHIESNSID-KVEEVKIDDIVKDVCCMMKTAAYKKNIKIE-KI 446

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
            + +P I AD    KQ+A+N++ N+I +T +GG + I T    N  V L V D GVG++ 
Sbjct: 447 GDKVPSIWADADRFKQMAINLMDNSIKYTNNGGTVKIGTMLQDNNCV-LWVEDNGVGISK 505

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
               +  + F ++  ++     GTGLGL + K +V    G   + S   KG+   +  PL
Sbjct: 506 EHQSRLFERFYRVDKARSRNQGGTGLGLAIVKHIVLGLSGTIDLQSEVGKGSKFTVKIPL 565


>gi|56420813|ref|YP_148131.1| two-component sensor histidine kinase [Geobacillus kaustophilus
           HTA426]
 gi|56380655|dbj|BAD76563.1| two-component sensor histidine kinase [Geobacillus kaustophilus
           HTA426]
          Length = 597

 Score =  331 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 91/364 (25%), Positives = 155/364 (42%), Gaps = 24/364 (6%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            +  E  QL SIL + +DG+   NR+G IL TN    +          +      +    
Sbjct: 251 ALNQEKEQLASILSSMADGVITFNRDGEILITNPPAERFLQ--AWYFEQGNDAEAMAP-L 307

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
           P  +      ++  +  Q+ E    G T     + L   +            + D++E +
Sbjct: 308 PPQVKELFARVVREEKEQSTEVTLQGRT----WVILMTPLYGKTMVRGAVAVLRDMTEER 363

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           +                  + DF+A VSHE+RTP+  + G+SE I +            E
Sbjct: 364 RL--------------DKLRKDFIANVSHELRTPIAMLQGYSEAIIDDI--AASEKEKKE 407

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
            A  I      +  +VNDLLD++++E+G + L +E V L   +   I      A EK+I 
Sbjct: 408 MAKVIYDESLRMGRLVNDLLDLARMEAGHIELEYEQVKLVPYIERVIRKFYGLAKEKQIE 467

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +   F +    I  D   ++Q+  N++ NAI  T SGG + +    + +  V + V+D+G
Sbjct: 468 LTAEFRDRDIEIALDPDRIEQVLTNLIDNAIRHTESGGTVRLIIEPSGDG-VTIHVQDSG 526

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
            G+   +L    + F +   ++     GTGLGL +AK +V+A+ G   + S   +GT   
Sbjct: 527 SGIPEEDLPFVFERFYKADKARTRGRSGTGLGLAIAKNIVEAHKGLITVHSKLNEGTTFS 586

Query: 806 IIFP 809
              P
Sbjct: 587 FYLP 590


>gi|51894441|ref|YP_077132.1| two-component sensor histidine kinase [Symbiobacterium thermophilum
           IAM 14863]
 gi|51858130|dbj|BAD42288.1| two-component sensor histidine kinase [Symbiobacterium thermophilum
           IAM 14863]
          Length = 596

 Score =  331 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 104/580 (17%), Positives = 205/580 (35%), Gaps = 37/580 (6%)

Query: 238 NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297
           ++ + L                  +       P +      N             +    
Sbjct: 48  HQSAQLLAGQLTNFFAGDRLDPEAVDQYMERWPGEVLVLDANGVVIGATARLSNREELLG 107

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETV-DKCPIPFFVYSHGNLFYANPSFLLLTKYKS 356
             F +         +     G+  +     +  PI       G +           K   
Sbjct: 108 LKFSHDDVSPAFFGNTNRRIGKEGSQRMAYEAVPITVADNVVGVI---------YLKDSL 158

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
            +       L  +L    L    +   + +  +            T       +      
Sbjct: 159 EEAYARLQDLRDILLVATLVAMASTVVLGVALARTITGPIRELTRTAALIAGGNFDQKI- 217

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476
                +                  +    +++ E  Q  +IL   +DG+  +NR   I+ 
Sbjct: 218 --PVRSGDEIGQLAEMFNRMSRQLKETMSEIQDEKSQAEAILTHMADGLMALNRARRIIR 275

Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
            N A  ++F       L +      E    S +   L E    +   T +        + 
Sbjct: 276 LNPAAQRMFQIQELQALGRRPGELAEG---SGLEEALEEAWDRNSALTRQIRLKDRVLQA 332

Query: 537 KLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
            +  L     +   S    +  HDI+E ++ +              S + +F+A VSHE+
Sbjct: 333 YITPLT---GEGRHSGGTVVVFHDITELERLE--------------SMRREFVANVSHEL 375

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           +TPLT +  + E + +   G   +P   + +   +D     +  +V DLL +++++ G +
Sbjct: 376 KTPLTTVKSYVETLLD---GAADDPEVRDRFLRVVDGETERMARLVRDLLRLTQMDEGTL 432

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715
             +  P  + E V+E +  +++ A+ KR+ +        P  L D   ++Q+ +N+L+NA
Sbjct: 433 RWNVRPQDVGELVAETVGRLRVQADRKRLTVLCEVDPETPPALCDYDKIQQVVINLLANA 492

Query: 716 IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           I FTP+GGQI +S      + V + + DTG+G+   +L +  + F ++  ++     GTG
Sbjct: 493 IEFTPNGGQIRVSVAPEGADAVRVTIADTGIGIPAQDLPRIFERFYRVDKARSRSMGGTG 552

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
           LGL +AK +V+ + G   I S   +GT +    P   T+ 
Sbjct: 553 LGLSIAKQIVELSGGAIAIASEVDRGTTVTFTLPAARTAE 592



 Score = 38.5 bits (88), Expect = 5.4,   Method: Composition-based stats.
 Identities = 27/343 (7%), Positives = 82/343 (23%), Gaps = 29/343 (8%)

Query: 110 AFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIY 169
           + +++  +L +      +DP   +   ++R   W G+  +    G      + + A    
Sbjct: 50  SAQLLAGQLTNFFAGDRLDPE-AVDQYMER---WPGEVLVLDANG------VVIGATARL 99

Query: 170 SRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS 229
           S   E  G + F    V+             +      +E      +             
Sbjct: 100 SNREELLGLK-FSHDDVSPAFFGNTNRRIGKEGSQRMAYEAVPITVADNVVGVIYLKDSL 158

Query: 230 PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYF 289
              + R+++    L                 L  +    + E      +       ++  
Sbjct: 159 EEAYARLQDLRDILLVATLVAMASTVVLGVALARTITGPIRELTRTAALIAGGNFDQKIP 218

Query: 290 GTLQNNSKESFEYLSHRNHPSLS--AYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANP 346
               +   +  E  +  +       +   + ++     +         +     +   NP
Sbjct: 219 VRSGDEIGQLAEMFNRMSRQLKETMSEIQDEKSQAEAILTHMADGLMALNRARRIIRLNP 278

Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
           +   + + + +  +    G      A       A++      S        A    I+  
Sbjct: 279 AAQRMFQIQELQALGRRPGE----LAEGSGLEEALEEAWDRNS--------ALTRQIRLK 326

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449
                 +         +   +     +  +  +    +     
Sbjct: 327 DR---VLQAYITPLTGEGRHSGGTVVVFHDITELERLESMRRE 366



 Score = 37.7 bits (86), Expect = 8.2,   Method: Composition-based stats.
 Identities = 24/240 (10%), Positives = 69/240 (28%), Gaps = 18/240 (7%)

Query: 94  YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIE 153
            +  ++    +       + +G R  ++++   ++       L +  +     T    ++
Sbjct: 272 RIIRLNPAAQRMFQIQELQALGRRPGELAEGSGLEE-----ALEEAWDRNSALTRQIRLK 326

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
              L   I     P+    R   G     + H             R +   +  HE+K  
Sbjct: 327 DRVLQAYIT----PLTGEGRHSGGT--VVVFHDITELERLE--SMRREFVANVSHELKTP 378

Query: 214 HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE 273
            ++V+     +    +  P +R  ++   + +    +   L  +   L   +E +L    
Sbjct: 379 LTTVKSYVETLLDGAADDPEVR--DRFLRVVDGETERMARLVRDLLRLTQMDEGTLRWNV 436

Query: 274 DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF 333
               +        +  G L+  +      +     P       + + +    ++      
Sbjct: 437 RPQDVGE---LVAETVGRLRVQADRKRLTVLCEVDPETPPALCDYDKIQQVVINLLANAI 493


>gi|85111598|ref|XP_964013.1| hypothetical protein NCU02057 [Neurospora crassa OR74A]
 gi|28925771|gb|EAA34777.1| conserved hypothetical protein [Neurospora crassa OR74A]
          Length = 1319

 Score =  331 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 116/624 (18%), Positives = 213/624 (34%), Gaps = 48/624 (7%)

Query: 221 KYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINL 280
                            +  S   E   +   ++   + P  +     L   ++    ++
Sbjct: 344 GAPHEGFNLLSQWRMWTDDFSRQLETDEYPISLMIKSETPFESFRVGMLGPDDERLIFDV 403

Query: 281 NQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHG 339
                +      +  +         R    +S      E       +  P   +     G
Sbjct: 404 EGAVIRDEITG-ELLAGVITCRDITRIEHEISQIKAADEERFRLICETMPQLVWTAGPDG 462

Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399
              + N  +   T       +   GG  T      L    A K                R
Sbjct: 463 AHDFYNSRWYSYTGLSVEASLG--GGWRTAFHPDDL--AEADKRWQNSTRTGEPYVIEYR 518

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459
                 + E    +      K  Q  E     G   +  +T   K + +    QL S++ 
Sbjct: 519 CR--SKDGEWRWFLGRALPLKNKQTGEIEKWFGTCTDVHETMEAKLEAKRTRQQLRSVIA 576

Query: 460 ATSDGIAIINREGIILST------------NRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
            +   +  ++    +                 + S   G  V ++        L      
Sbjct: 577 HSRMTMFAVDPNRKVTLLEGSLIWDALSPECGSSSWFIGKDVYEVFN-NINQQLPDGQTP 635

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS------SCYSLTMHDI 561
                L  IL       L+    G         + +    L  +            + D+
Sbjct: 636 AFLQPLESILGGKSPVELQDHKFGRWYRTGFQPI-LRRDPLTGNSTEDFIEGVMGFIMDV 694

Query: 562 SEWKQEKN----------KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
           +E K  +           +L   +  A++ S  KS FLA +SHEIRTP+T +IG +E++ 
Sbjct: 695 TELKDRERDIEAQALEKRQLLANEAAAKEASRLKSQFLANMSHEIRTPITGVIGMAELLL 754

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
           +       +    E    I RS N +L ++ND+LD SKIESG++++     SL   + E 
Sbjct: 755 DVEL----DAEQRELTENIFRSANALLTVINDILDFSKIESGRLDIEEVQFSLAVVIQEV 810

Query: 672 ISLVQLYANEKRILIRTSFANNI---PRILADLRSVKQIALNILSNAIHFTPSGG-QIII 727
             ++   A  K +       ++I     ++ D   V+QI  N+ +N+I FT  G  ++ +
Sbjct: 811 GKMLSFTAERKSLAFNYEICSDIGIDLVVMGDPGRVRQIITNLATNSIKFTHEGHVKLHV 870

Query: 728 STTHTSNE--EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
           S    +++  EV   ++DTG+G+    L++  +PF Q   S   +  GTGLGL ++K ++
Sbjct: 871 SVEQETDDTIEVKFVIQDTGIGIEEEVLKRLFQPFSQGDPSTARKFGGTGLGLTISKNLL 930

Query: 786 DANMGKFYIFSTPAKGTLIEIIFP 809
           +   G+  + S   +GT      P
Sbjct: 931 ELMKGRMALASKKDEGTTATFWIP 954



 Score = 61.2 bits (147), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 15/155 (9%), Positives = 35/155 (22%), Gaps = 8/155 (5%)

Query: 68  LDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI 127
              E  F         +  W     G     +       G      +G           +
Sbjct: 438 AADEERFRLICETMP-QLVWTAGPDGAHDFYNSRWYSYTGLSVEASLGGGWRTAFHPDDL 496

Query: 128 DPNNHIGD-LLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN-REFSGFRGFGIVH 185
              +       +    +  +      +G   +      ALP+ ++   E    + FG   
Sbjct: 497 AEADKRWQNSTRTGEPYVIEYRCRSKDGE--WRWFLGRALPLKNKQTGEIE--KWFGTCT 552

Query: 186 VNRVD-NDPRALGKRLDKKFSHLHEIKKGHSSVEK 219
                        +   +  S +   +    +V+ 
Sbjct: 553 DVHETMEAKLEAKRTRQQLRSVIAHSRMTMFAVDP 587


>gi|332702589|ref|ZP_08422677.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332552738|gb|EGJ49782.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 974

 Score =  331 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 121/665 (18%), Positives = 228/665 (34%), Gaps = 56/665 (8%)

Query: 176 SGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR 235
            G  G+ +    R       +   L              +++   +  +   +S   +  
Sbjct: 59  PGMDGYELCRRIRASTKLAHIPVIL-------------LTTLADPEDILKGLKSGATNFV 105

Query: 236 MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN 295
            K     L      +       +       E  +      H ++ +         +   N
Sbjct: 106 TKPYDPDLLLGRVRQLMSELDLRRAKGQKAELDIVFGGKRHHVSADARQMADLLLSTYEN 165

Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKY 354
           +      L   N             L    +   P    V    G +   N ++  + + 
Sbjct: 166 AVIQSRALDRANKDLAEKEA-----LLRAVIASLPAQIMVLDAQGRITATNEAWEHMGRN 220

Query: 355 KSVDDIEIAGGLSTLLDAPKLSDN-------NAIKPVMLYRSDRTCIAASARLHTIQWNR 407
             +    I G L                   +++   +   +  T    S+ L      +
Sbjct: 221 SPL----IPGVLGRTFGHIARQGLCSEDIALDSVAAAVHEVAAGTRKNFSSELCVQSDGQ 276

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
           +  L +   P                  +  +++  ++ +      L         G   
Sbjct: 277 QRWLLLYASPMSDRGGA------VVTHMDITESKRAEQALRRSEANLAKAQHLAMLGSFE 330

Query: 468 INREGIILSTNRAVSKLFGYPVEDIL-RKPFT-VFLEQNTPSVMNHYLTEILSLDLRQTL 525
              +G     +  + ++ GY    +   + F    L           L +         L
Sbjct: 331 WLSKGDAFIWSDELYRILGYQPGSVQPGRDFLLRHLHAEDSQAFVKCLLDTARRGTPFEL 390

Query: 526 EKITLGSTKEEKL--LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
           +   +     E++               S    T+ D++  K  + +L  AK+ AE  S 
Sbjct: 391 QFRFMRQDGVERIGLCQAEAEFDATGKLSRILGTVQDVTRQKLLERELVRAKEAAEAGSR 450

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
            KS+FLA +SHEIRTPL  I+G +E+               EY + +  S + +  +V D
Sbjct: 451 VKSEFLANMSHEIRTPLNGILGMTELTLRTGLTR----EQREYLSMVKASADALATLVGD 506

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLR 702
           +LD S+IE+GK+ L  +   L E +  A+  +++ A  K + +       +P  +  D  
Sbjct: 507 ILDFSRIEAGKLELERKDFRLREILQAALKPMEMQAEAKGLHLTLRIDPAVPEHLHGDAG 566

Query: 703 SVKQIALNILSNAIHFTPSGGQ-III---STTHTSNE-------EVILRVRDTGVGMTNY 751
            ++Q+ LN++SNAI FTPSGG  I +   +T+HT +        E++  V DTG+G+   
Sbjct: 567 RLRQVLLNLVSNAIKFTPSGGIDIDVLPTATSHTPSGQEPDHKFELLFSVADTGIGIDTQ 626

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
             E+    F Q  +S   + EGTGLGL +++ +V+   G  ++ S   +G        L 
Sbjct: 627 LQERVFDIFTQGDSSLSRQYEGTGLGLAISRQLVELMGGAIWVESAIGQGATFNFTVALE 686

Query: 812 DTSHP 816
               P
Sbjct: 687 RAIAP 691



 Score = 44.2 bits (103), Expect = 0.084,   Method: Composition-based stats.
 Identities = 22/254 (8%), Positives = 53/254 (20%), Gaps = 21/254 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYA--FKMIGMRLCDVSDILHIDPNNHI-----GDLLKRQN 141
           +DA G +   +E       N      ++G     ++       +  +             
Sbjct: 201 LDAQGRITATNEAWEHMGRNSPLIPGVLGRTFGHIARQGLCSEDIALDSVAAAVHEVAAG 260

Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
           T    ++   ++       + L A P+  R                          +R +
Sbjct: 261 TRKNFSSELCVQSDGQQRWLLLYASPMSDRGGAVVTHM------DITESKRAEQALRRSE 314

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
                  +      S E          S   +  +  +  S+          L  E    
Sbjct: 315 ANL-AKAQHLAMLGSFEWLSKGDAFIWSDELYRILGYQPGSVQPGRDFLLRHLHAEDSQA 373

Query: 262 -------LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
                       +    Q  F   +  +           + + +    L      +    
Sbjct: 374 FVKCLLDTARRGTPFELQFRFMRQDGVERIGLCQAEAEFDATGKLSRILGTVQDVTRQKL 433

Query: 315 FDEGENLTPETVDK 328
            +       E  + 
Sbjct: 434 LERELVRAKEAAEA 447


>gi|166850504|gb|ABY91232.1| FitF [Pseudomonas fluorescens]
          Length = 1056

 Score =  331 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 106/517 (20%), Positives = 201/517 (38%), Gaps = 32/517 (6%)

Query: 323 PETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
              V     P F+      +  N     + +  S              DA +       +
Sbjct: 195 SGVVLAASSPAFILKSDRAWPWNRFTGEIRRQFSDYPFANGVPERLPFDAHQSVIQLDGR 254

Query: 383 PVMLYRSD-----RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
              L R D      +       L  +         +                      + 
Sbjct: 255 RYSLSRVDFDWNDPSGPWTLITLGDLDTLLPGEQVLLIEGLSALVFLLLLWGGLRRLADA 314

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR--- 494
              + +  ++E    +L   L++ + G+   N     +  N    ++ GY  + + +   
Sbjct: 315 RRHKRDVAQIEQSEQRLDMALQSGALGLWDWNLSLGTVINNDVWLQILGYSKQQMEQAFG 374

Query: 495 ---KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
              + +T  +  +    +   L   L+ ++ +          KE + L +  I K +   
Sbjct: 375 HGLERWTALVHPDDYEPVMARLKAHLNDEVGE-YRAEYRMRNKEGQWLWVLDIGKIMQRD 433

Query: 552 S-----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
           +       +  + DISE K  + ++  ++  AE+ +  KS+FL  +SHEIRTPL AIIG 
Sbjct: 434 ANGAPTRVTGVLQDISERKAVEAQIQQSRHDAERATQAKSEFLDCMSHEIRTPLNAIIGM 493

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
           + +  +    P+      +Y   IDR+   ++  +N +LD+SKIE+GK+++      L E
Sbjct: 494 AHLALDLPLEPV----QRDYIEKIDRAAKHLVGTINGVLDLSKIEAGKLSMEQVGFDLRE 549

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ- 724
            V + + LV+  A EK + ++     ++PR  + D   + Q+  N++ NAI FT +G   
Sbjct: 550 LVDDVLLLVRQRAEEKALRLQLDIPASLPRRYVGDPLRLAQVLTNLVDNAIKFTEAGHVC 609

Query: 725 --IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
             + +         +   V DTGVG+++ +  +    F Q   S   R  G+GLGL ++K
Sbjct: 610 IGVCLVRQWDHQALLCFSVTDTGVGISDEQQARLFNVFVQADRSISRRYGGSGLGLTISK 669

Query: 783 AMVDANMGKFYIFSTPAKGTLIEII-------FPLYD 812
            +V    G  ++ S P +G   +          PL +
Sbjct: 670 KIVQLMQGDIWVKSQPGQGATFKFSVQLSLSPLPLEE 706


>gi|282899889|ref|ZP_06307850.1| Multi-sensor Signal Transduction Histidine Kinase
           [Cylindrospermopsis raciborskii CS-505]
 gi|281195159|gb|EFA70095.1| Multi-sensor Signal Transduction Histidine Kinase
           [Cylindrospermopsis raciborskii CS-505]
          Length = 638

 Score =  331 bits (849), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 89/413 (21%), Positives = 181/413 (43%), Gaps = 30/413 (7%)

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINK--RKMEIEVMQLCSILEATSDGIAIINREGI 473
           I      +  E +       E ++    +   ++  E  +L +++   +DG  +I+    
Sbjct: 236 IDLPLGGELGELIFSFNDMAERLERYEEQNIEELTAEKAKLETLVSTIADGAVLIDNNMQ 295

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
           ++  N    ++F +   D++ +    +L  +    +   L E+ S   R++ E   L   
Sbjct: 296 VILVNPTARRIFAWEGTDVVGQNLLNYLPHSVQMEITRTLYEMAS-GERESAEFRILLVE 354

Query: 534 KEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
             ++ + + +              ++T+ DI+                 + +  KS F++
Sbjct: 355 PTKRTIRILLTTVLDSQRESIKGIAITVQDITR--------------EVELNEAKSQFIS 400

Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650
            +SHE+RTPL  I  + E + +     LG     E+   ++   + +  +VND+LD+SK+
Sbjct: 401 NISHELRTPLFNIKTYIETLHD-YGDDLGAKERQEFLATVNHETDRLTRLVNDVLDLSKL 459

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710
           ESG+   HF+ V L +A+ + +   QL A EK I +      N+P ++ +   + Q+  N
Sbjct: 460 ESGR-TYHFDGVDLAQALEQTLRTYQLNAKEKGINLVQELTPNLPLVIGNYDLLLQVFGN 518

Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEE-------VILRVRDTGVGMTNYELEKAMKPFGQI 763
           ++ NA+ FTP+GG + I                V + + DTG+G+   + +     F ++
Sbjct: 519 LIGNALKFTPAGGIVAIRAYRVDVNRSGHNSPLVRIEISDTGIGIAPEDQQAIFDRFFRV 578

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
            N +    EGTGLGL + + +++ +  + ++ S    GT       L+D   P
Sbjct: 579 EN-RVHTLEGTGLGLSIVRNIMERHHSQVHLVSEVGVGTTFWFDLALFDEDKP 630


>gi|209548532|ref|YP_002280449.1| multi-sensor signal transduction histidine kinase [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|209534288|gb|ACI54223.1| multi-sensor signal transduction histidine kinase [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 769

 Score =  331 bits (849), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 119/529 (22%), Positives = 225/529 (42%), Gaps = 50/529 (9%)

Query: 317 EGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
           E        + +     + +      F+ + S   +      D     G  + L+     
Sbjct: 252 ESNLRVETALSRGRCGLWDFDFENREFFWSRSMYDMLGLPGSDKTMGFGEAARLMH---- 307

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
            D+  +  +    +         ++  ++    + + M        +     +   GI  
Sbjct: 308 PDDGGLYEIARAIAKGHSGQVD-QIFRMRHAGGHYVWMRARAQVIRSNSGR-VHLIGIAM 365

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
           +  +     ++      +L   +E TS+   + ++   ++  N    + +G P   ++  
Sbjct: 366 DVTEQHRLAQRYAEADQRLADAIECTSEAFVLWDKNDRLVMCNTHFQQAYGLPDSVLVPG 425

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555
                +     +     +   ++        + T     +E+ L +     +        
Sbjct: 426 TERSIV---NAAAARPVIERRIADADGPGYSRTTEVQLADERWLQINERRTR---DGGRV 479

Query: 556 LTMHDISEWKQEKNKLSH-----------------------------------AKKIAEK 580
               DI+  K+ + +L                                      K+ AE 
Sbjct: 480 SVGTDITLMKRHQERLRESERRLMATIGDLSASRQTLEIQKSELSTANANYQAEKERAEA 539

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            +  KS+FLA +SHE+RTPL AI+GFSE+++NQ FGPLG+ +Y EYA  I  SG  +L++
Sbjct: 540 ANKAKSEFLANMSHELRTPLNAILGFSEILQNQMFGPLGSLKYDEYARDIHDSGKHLLNV 599

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILAD 700
           +ND+LD+SKIE+G + LH E + L   + E++    + A EK I+I    ++ +  + AD
Sbjct: 600 INDILDMSKIEAGHLRLHCERIDLVPLIEESLRFTAIPAAEKNIVIDQRISSGL-TLTAD 658

Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760
            R++KQ+ LN+LSNA+ FT +GG+I + T       V++ + DTG+G+    L K  +PF
Sbjct: 659 RRAMKQVLLNLLSNAVKFTDNGGRIAVRTRRID-GAVLVTIADTGIGIPRSALSKIGQPF 717

Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            Q+ +       G+GLGL +++++   + G+  I S  A GT+I +  P
Sbjct: 718 EQVQSQYAKSKGGSGLGLAISRSLTALHGGRMKIRSREAVGTVISLRIP 766



 Score = 44.6 bits (104), Expect = 0.066,   Method: Composition-based stats.
 Identities = 21/247 (8%), Positives = 55/247 (22%), Gaps = 7/247 (2%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN--HIGDLLKRQNTW 143
            W+ D        S  +   +G        M   + + ++H D      I   + + ++ 
Sbjct: 268 LWDFDFENREFFWSRSMYDMLGLPGSDKT-MGFGEAARLMHPDDGGLYEIARAIAKGHSG 326

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                         YV +   A  I S +         GI       +         D++
Sbjct: 327 QVDQIFRMRHAGGHYVWMRARAQVIRSNSGRV---HLIGIAMDVTEQHRLAQRYAEADQR 383

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL-RMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
            +   E       +  +   +    +       + + V       +  +           
Sbjct: 384 LADAIECTSEAFVLWDKNDRLVMCNTHFQQAYGLPDSVLVPGTERSIVNAAAARPVIERR 443

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
            ++               ++   +      ++  + S                +    L 
Sbjct: 444 IADADGPGYSRTTEVQLADERWLQINERRTRDGGRVSVGTDITLMKRHQERLRESERRLM 503

Query: 323 PETVDKC 329
               D  
Sbjct: 504 ATIGDLS 510


>gi|188579782|ref|YP_001923227.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium populi BJ001]
 gi|179343280|gb|ACB78692.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium populi BJ001]
          Length = 786

 Score =  331 bits (849), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 121/653 (18%), Positives = 248/653 (37%), Gaps = 57/653 (8%)

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
                  I+  +                 P   +     ++T         +   +    
Sbjct: 116 LIGPTGRIRAAYPRPAPSDTFASYLAEGEPIAFLGESAGAMTVNLQAGGQAVVATRRLAD 175

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
              E ++ ++ +  T N  +                +    ++      +   DE  +L 
Sbjct: 176 GLGEVAVLQRFEPLTANWWRMFGHHAISLSAIGLVLAGMATAYILQTQRAQAADEVCDLV 235

Query: 323 PETVDKC----PIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
            + +D          + +       + + S   L  Y    D+   G ++ LL +     
Sbjct: 236 KQRLDTALGRGRCGLWDWDIARGTIFWSDSMYALLGYTPEKDLLSFGDVNALLHSEDGDL 295

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
            +  + +    +             I+    + + +        +    +    GI  + 
Sbjct: 296 YSLARHLAASHATVD------HEFRIRDASGDWIWLRTRAEIVEDALDGSRHLVGIAMDV 349

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED-ILRKP 496
            + R          M+L   +EA S+   + +    ++  N     L     ED +  + 
Sbjct: 350 TEQRRLAEFTATADMRLRDAVEAISEAFVLWDAGNRLVLCNSKFRDLHALDSEDAVPGRR 409

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556
           +   + +     +   +         +T E        + + L +    ++      Y  
Sbjct: 410 YDEIMGRGALPPVRRGIPGA-ERGTSRTFEVELT----DGRWLQVS---ERRTKDGGYVS 461

Query: 557 TMHDISEWKQEKNKLSHAKKIAEK-----------------------------------E 581
              DI+  K+ + +L  +++   +                                    
Sbjct: 462 VGTDITSLKRHQEQLVASERELIETVKDLKRSRRTLETQTQQLADLAERHLDQKARAEIA 521

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
           +  KS+FLA +SHE+RTPL AI+GF+E+++++ +G LG+PRY +Y   I +SG  +L ++
Sbjct: 522 NQAKSEFLANMSHELRTPLNAIMGFAELMESEVYGSLGSPRYADYCRDIQQSGTYLLSVI 581

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701
           +D+L +S+IE+ ++ L    + LD A++ A++LV   A  K + I    A  +  +LAD 
Sbjct: 582 DDILHMSRIEANRVKLVRREIGLDAAIAAAVTLVSKEAASKSVAIDIELAGTL-NVLADE 640

Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761
           R++ QI LNI+ NA+ FTP GG++ +    + N    L + DTG+G+    + K  +PF 
Sbjct: 641 RALHQILLNIIQNAVKFTPEGGRVALR-GRSCNGFAHLFIGDTGIGIPKAAISKLGRPFE 699

Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           Q+  +     +G+GLGL +A++  + + G   I S    GTL+ +  P+   +
Sbjct: 700 QVETNLTRSYKGSGLGLAIARSTAELHGGSLRIRSEEGVGTLVLVRLPMPTPA 752


>gi|320159585|ref|YP_004172809.1| two-component sensor histidine kinase [Anaerolinea thermophila
           UNI-1]
 gi|319993438|dbj|BAJ62209.1| two-component sensor histidine kinase [Anaerolinea thermophila
           UNI-1]
          Length = 584

 Score =  331 bits (849), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 101/532 (18%), Positives = 199/532 (37%), Gaps = 40/532 (7%)

Query: 283 YTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV--DKCPIPFFVYSHGN 340
               +  G  +    +   +LS        +  +  E     T+  +   +   V S   
Sbjct: 87  LADGRVVGESEKPLDQLENHLSRPEVQEALSNREAVEIRFSTTIGEEMLYVAIPVVSQNQ 146

Query: 341 LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400
              A             +   + G L                 +               L
Sbjct: 147 QVVAVIRLAASMGAIRQEQQTLNGSLFIAALIAAAFAVLIAVWITRR-----------VL 195

Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR--KMEIEVMQLCSIL 458
             ++     +  +     E A    + + +     + +   + ++  ++  E  +L S+L
Sbjct: 196 APLEKLSATAQQLAEHTGETARNEGDEIRRLQAAFQTMSEHLREQVSQLRAERQKLHSVL 255

Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
           +   DGI +++  G I   N A + +FG      +       +  +T   +         
Sbjct: 256 KNMKDGILLVDENGKISLINPAAAGMFGIEETRAIGASLIEAVRHHT---IVELWERTRH 312

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578
            +  Q  E   L    E + L + +        +   L  HD++                
Sbjct: 313 SEQPQDGEVEVL---PEHRFLQVVLTPLGKETGNATLLVFHDLT--------------RE 355

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
            +    + DF++ VSHE+RTPL ++    E ++         P    +   ++   + + 
Sbjct: 356 RRVERVRRDFVSNVSHELRTPLASLKALVETLQEGAL--EDPPAAQRFLRQMEIEIDNLT 413

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
            +V +LL++S+IESG + L   PVS  E +      ++L A    + ++     ++P + 
Sbjct: 414 QMVRELLELSRIESGLVPLQRRPVSPCEILRRGAERMRLQAERAGLTLQVDCPESLPEVF 473

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
           AD   V+Q+ +N+  NA+ FTP GG+I +       + +   VRDTGVG+   +LE+  +
Sbjct: 474 ADAERVEQVLVNLTHNAVKFTPPGGEITLGVK-QEGQAICFWVRDTGVGIPPEDLERIFE 532

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            F +    +   GEGTGLGL +A+ +V+ + G+ +  S   +G+      PL
Sbjct: 533 RFYKTD--RSRSGEGTGLGLSIARHIVETHGGRIWAESQVQQGSTFFFTLPL 582



 Score = 37.7 bits (86), Expect = 7.7,   Method: Composition-based stats.
 Identities = 23/230 (10%), Positives = 52/230 (22%), Gaps = 14/230 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D +G +  I+       G    + IG  L +      I            +    G+  
Sbjct: 265 VDENGKISLINPAAAGMFGIEETRAIGASLIEAVRHHTIVELWERTR--HSEQPQDGEVE 322

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           + P      +  + +   P+       +      + H    +     + +      SH  
Sbjct: 323 VLP-----EHRFLQVVLTPLGKETGNAT----LLVFHDLTRERRVERVRRDFVSNVSHEL 373

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPH---LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
                      E     + + PP     LR              +   L   +  L+  +
Sbjct: 374 RTPLASLKALVETLQEGALEDPPAAQRFLRQMEIEIDNLTQMVRELLELSRIESGLVPLQ 433

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
              +   E           + +  G                +   +    
Sbjct: 434 RRPVSPCEILRRGAERMRLQAERAGLTLQVDCPESLPEVFADAERVEQVL 483


>gi|51891981|ref|YP_074672.1| two-component sensor histidine kinase [Symbiobacterium thermophilum
           IAM 14863]
 gi|51855670|dbj|BAD39828.1| two-component sensor histidine kinase [Symbiobacterium thermophilum
           IAM 14863]
          Length = 837

 Score =  331 bits (849), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 129/673 (19%), Positives = 250/673 (37%), Gaps = 44/673 (6%)

Query: 159 VPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI-------- 210
             + ++   +        GF  F        +    A  +    +   + E         
Sbjct: 192 TWLTISLAAVL----VLGGFLVFARSVTRSTEALAEAANRIAQGERGVVLEAPLDGELQV 247

Query: 211 ---KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
                   S+   + +   Q+     +    ++ +  E      + L+ ++  L      
Sbjct: 248 VANAFAKMSLTLAEQEKQLQEQQEQLIAQNEELLAQQESVRRHAEELERKERHLSRLHSL 307

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
           S           L      +Y       +        + +   ++A      +L  + + 
Sbjct: 308 SSKMVGSIEMDQLANLILDEYLDLYGGVAGALLLVDEYADRLKVAAERWLSPDLKGQFIP 367

Query: 328 KC-PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
           +  P+   V     +      +     + SV  +     +  +   P +    AI  V +
Sbjct: 368 RSGPMARCVEQREVVV---ARYPDTQTHISV-WLRDVPVVQEVYV-PLVHTGRAIGVVAI 422

Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
             ++ T + A A+        + S+A+      +  +      Q+     ++     + +
Sbjct: 423 AFTEPTELNAEAQALWHAVAGQASVALAAAQNHQEVKRAFAALQDQAAQIEILNAQLEEE 482

Query: 447 MEIEVMQLC---SILEATSDGIAIINREGIILSTNRAVSKLFGYP-VEDILRKPFTVFLE 502
            +    QL    SI+     G  + +  G +L +N    + FG    ++ L +       
Sbjct: 483 RDRASAQLDIYLSIVSTMPAGAWLCDTGGNLLVSNSMFQEFFGKTVPDEPLEQMLAQIAA 542

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
                         L  D +   E     +T    L      + K         T  D++
Sbjct: 543 VLPEDDPFPQTVRDLVHDPQAVAEGQLRLTTGY-TLQWSSAPVGKGQSRVGRLFTFQDVT 601

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E                +    KS+F+  VSHE+RTPLT+I+G+  ++     GPL   +
Sbjct: 602 E--------------LAELDRLKSEFVNTVSHELRTPLTSIMGYLSLVLAGTAGPL-QEQ 646

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             E+ N + R+ N + +++NDLLDI +IESG+M +H  P SL   V +     ++ A +K
Sbjct: 647 QREFLNIVARNTNRLANLINDLLDIQRIESGRMPIHLSPTSLASVVKQVAETFRVQAEQK 706

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
            +    +    +P I AD   + QI  N++SNA+ +T  GG + +S +    ++V L V 
Sbjct: 707 GLSFTVNVPEEVPLINADPDRLTQIIANLVSNAVKYTKEGG-VTVSVSAV-GDQVELEVA 764

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG+G++  + ++  + F +  +       GTGLGLP+ K MV+ + G   + S P +G+
Sbjct: 765 DTGIGISPADQKRIFEKFYRAEHPYVREVGGTGLGLPIVKTMVEEHGGDLQLESQPGRGS 824

Query: 803 LIEIIFP-LYDTS 814
              + FP L D S
Sbjct: 825 RFIVSFPALKDES 837


>gi|329848851|ref|ZP_08263879.1| sensory box protein [Asticcacaulis biprosthecum C19]
 gi|328843914|gb|EGF93483.1| sensory box protein [Asticcacaulis biprosthecum C19]
          Length = 1358

 Score =  331 bits (849), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 107/642 (16%), Positives = 219/642 (34%), Gaps = 46/642 (7%)

Query: 186  VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH-----LRMKNKV 240
                  D  A+ +          +++     +  + +D+ +             ++   V
Sbjct: 596  DVLAVLDAPAIPRPRVVLADDNADMRDYIHRLLNDDFDVVAVTDGEQAWQAIRDQLPELV 655

Query: 241  SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF 300
             +           L         +    +                             + 
Sbjct: 656  LTDVMMPKLDGFGLLERLRGDDATRRLPVIMLSARAGEEARVEALDAGVDDYLVKPFNAR 715

Query: 301  EYLSHRNHPSLSA-YFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYK--S 356
            E L+        A    EGE      ++       V      + Y N +   +   +   
Sbjct: 716  ELLAKVRSQLQIAHLRREGEAQVRRVLESIRDGIMVIERDWRITYMNGAGRDIIAGRGVD 775

Query: 357  VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
             + I                         L R+    +          W  +   A+   
Sbjct: 776  PEAIIGLSHWDAF-----PHAAGTFVEDHLRRAMEDRVMVEFENFYAPW--QRWFAVRVY 828

Query: 417  PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII-NREGIIL 475
            P        +    +    +  D +     + I   +   + E+    + I   ++  + 
Sbjct: 829  PV-------DEGGVSIYFHDITDRKEADAALRISQERWHGLAESMPQLVWIAPGQDAGVS 881

Query: 476  STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
              N   +   G P+ +++ + +   L  +    M       ++       +        +
Sbjct: 882  YLNEQWAIYTGRPIGELINEGWVDNLHPDDRQPMFDTWNAAVA--AEGLYDIEYRLRRFD 939

Query: 536  EKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
                  +     +  +    + +  T  DI         +  A+  AE  +  KS+FLA 
Sbjct: 940  GGYRWFKTRGVPVREASGRLNGWYGTCTDI-------QDMVEARVAAESANRAKSEFLAN 992

Query: 592  VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
            +SHEIRTPL AI+G + ++ N +  P  + +   Y   +  S + ++ ++ND+LD+++IE
Sbjct: 993  MSHEIRTPLNAIVGLTHIMLNYKTDPASHGK---YLQTMKDSADTLMQLINDVLDLARIE 1049

Query: 652  SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILADLRSVKQIALN 710
            + ++ L   P  L E V E + + ++   EK +     F   +   +  D+  +KQI +N
Sbjct: 1050 ADRVELEMAPCPLHEVVRECLGITEVKGAEKGLACGLDFGLPHGTVVETDVLRLKQILMN 1109

Query: 711  ILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
            +LSNA+ FT +G +I +  +          V +RVRDTGVG+   ++E     F Q   S
Sbjct: 1110 LLSNAVKFTQTG-RIDVEVSAAPARSELLPVTIRVRDTGVGIAADKIEHIFAQFTQEDAS 1168

Query: 767  QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
               R  G+GLGL +++ + +   G+  + S   KGT+  +  
Sbjct: 1169 ITRRFGGSGLGLAISRRLSEMLGGRLTVESEVGKGTVFSLSL 1210



 Score =  232 bits (591), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 64/255 (25%), Positives = 116/255 (45%), Gaps = 5/255 (1%)

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           Q         +   +    K+ F + VSHE R   T +      ++     P   PR  E
Sbjct: 318 QAYEDERSRAEALAELDRAKTAFFSNVSHEFR---TPLTLLLAPLEEVLADPATTPRDRE 374

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
             +  +R+   +L +VN LLD S+IE+G+    F+PV+L    +E  S  +   +   + 
Sbjct: 375 RLDVANRNALRLLKLVNVLLDFSRIEAGRTQAAFQPVNLACYTAELASNFRSAMDRAGLA 434

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
            +         + AD+   +++ LN++SNA  +T  G ++ IS +  ++   +L VRDTG
Sbjct: 435 YKLDIQPLSQPVYADVEMWEKVVLNLISNAFKYTLEG-EVEISLS-EADGHAVLAVRDTG 492

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
            G+  +E       F ++        EG+G+GL L + +V  + G+ ++ S   +G+   
Sbjct: 493 PGIPEHERAHVFTRFHRVEGVTGRSIEGSGIGLALVRELVRLHGGEVWLKSETGRGSTFF 552

Query: 806 IIFPLYDTSHPHDCI 820
           +  PL     P D +
Sbjct: 553 VRLPLGTAHLPADQV 567



 Score = 46.6 bits (109), Expect = 0.020,   Method: Composition-based stats.
 Identities = 27/272 (9%), Positives = 66/272 (24%), Gaps = 31/272 (11%)

Query: 95   LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGKTTLWPIE 153
            +  ++E+     G    ++I     D        P  +     +  +  +  +  L   +
Sbjct: 880  VSYLNEQWAIYTGRPIGELINEGWVDNLHPDDRQPMFDTWNAAVAAEGLYDIEYRLRRFD 939

Query: 154  GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN-RVDNDPRALGKRLDKKFSHLHEIKK 212
            G   Y       +P+   +   +G+  +G       +     A       K   L  +  
Sbjct: 940  GG--YRWFKTRGVPVREASGRLNGW--YGTCTDIQDMVEARVAAESANRAKSEFLANMSH 995

Query: 213  GHSSVEKEKYDIFS--------QQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
               +       +            S   +L+     +       +    L   +   +  
Sbjct: 996  EIRTPLNAIVGLTHIMLNYKTDPASHGKYLQTMKDSADTLMQLINDVLDLARIEADRVEL 1055

Query: 265  EESSLPEQEDFHT-----------------INLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
            E +  P  E                     ++            +    +     LS+  
Sbjct: 1056 EMAPCPLHEVVRECLGITEVKGAEKGLACGLDFGLPHGTVVETDVLRLKQILMNLLSNAV 1115

Query: 308  HPSLSAYFDEGENLTPETVDKCPIPFFVYSHG 339
              + +   D   +  P   +  P+   V   G
Sbjct: 1116 KFTQTGRIDVEVSAAPARSELLPVTIRVRDTG 1147



 Score = 42.3 bits (98), Expect = 0.35,   Method: Composition-based stats.
 Identities = 36/387 (9%), Positives = 78/387 (20%), Gaps = 29/387 (7%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR--QNTWYGKT 147
                    ++     IG     M+G     V   +  D    +   +          + 
Sbjct: 59  GRDLVFLY-NDPYKSIIGGKHPYMLGQPTSVVWAEIWEDIGPMLATAMGGSEGTYVEEQL 117

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
            +    G         +  PI   +    G         +RV  D +   +R        
Sbjct: 118 LIMERNGYPEETYYTFSYSPIPDDDGTPGGIICANTEDTHRVIGDRQVALRRDLAAALTQ 177

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE---------YYAHKDDVLKTEK 258
                   ++        +   P   + + +    +             A          
Sbjct: 178 ARTVSQACTLAMGALGHNTHDLPFALIYVPDGEDLVLAGTSGIARGHAAAPARLAADKSI 237

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTK--KQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
           +PL  S +S L           +            L   +      +          Y +
Sbjct: 238 WPLSDSGDSRLIADLRGRLDLPSGAWPVSPDRAVMLPIATGGENAGVLITGLNPYRLYDE 297

Query: 317 EGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
           + +        +               AN       +    + +       T   +    
Sbjct: 298 DYKGFMTLVTGQIAAGI----------ANAQAYED-ERSRAEALAELDRAKTAFFSNVSH 346

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           +      ++L           A   T   +RE                   +  + IE  
Sbjct: 347 EFRTPLTLLLA----PLEEVLADPATTPRDRERLDVANRNALRLLKLVNVLLDFSRIEAG 402

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSD 463
                     +     +L S   +  D
Sbjct: 403 RTQAAFQPVNLACYTAELASNFRSAMD 429


>gi|254559285|ref|YP_003066380.1| Two-component sensor histidine kinase with a PAS domain
           [Methylobacterium extorquens DM4]
 gi|254266563|emb|CAX22327.1| Two-component sensor histidine kinase with a PAS domain
           [Methylobacterium extorquens DM4]
          Length = 646

 Score =  331 bits (849), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 115/581 (19%), Positives = 210/581 (36%), Gaps = 18/581 (3%)

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
           V       A   D             E S+  + +         ++      +       
Sbjct: 3   VLRKDGTLASLFDSRLAGLVHASALAEPSVRFRHER-----FLISRLATGAVMMAGLPPY 57

Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDD 359
             +    +     A       L    V       +V    +        + L        
Sbjct: 58  LVWRGVPSGLEAIAIASLFLPLLAAVVLSRTGSLWVAHALSSLGLTGIVVCLAALTGGAS 117

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
              A  L  +     +S +          +     A +  L         +L        
Sbjct: 118 SAAAIWLVAVPLEAMVSGSRRATIAASVIA--VVGAFAIALSGYLPVGALALDWPNAIVM 175

Query: 420 KANQFPENMPQNGIEPEDVDTRIN-KRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
                           E +      + +M+    +   +L A  D +   +  G +L  +
Sbjct: 176 PVFAVTAIGHIAAQAMEHMRREGEWRARMQDNEARDRLLLSAIDDLVTWHDANGRVLEAS 235

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE-- 536
            + ++  G     +        +       +   ++++ +     T+             
Sbjct: 236 GSAARFVGAEASRLRGHGLLDRVHIGDRPALLQAISDVAAHGAPATVPFRLHLDAARGDG 295

Query: 537 -KLLSLRIIIKKLP------FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
            + +   +   ++         S       D+SE ++   +L  A+  AE+    K+ FL
Sbjct: 296 SRTIFAEMRAHRIEAGLAGANGSTVVAVTRDVSEHRRHAQELDRARAEAERADEVKTHFL 355

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
           A VSHE+RTPL AIIGFS+V+  +    L   R  EYA  I +SG  +LD+VN LLDIS+
Sbjct: 356 ATVSHELRTPLNAIIGFSDVLGGEGAVSLSPERSREYAGIIAQSGRHLLDVVNTLLDISR 415

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709
           I  G  +   EPV ++  +     L++L A+   I + ++       ++AD R+ +Q+ +
Sbjct: 416 IRGGHFDFQPEPVDVEALIRGCCDLMRLKADASGITLTSAPVPAGCALVADARACRQMLI 475

Query: 710 NILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
           N++SNA+ FTP GG++ +         + + V D G+G+T  +L +   PF Q+      
Sbjct: 476 NLISNAVKFTPRGGRVEVMVR-RGGAYLDIVVSDDGIGITEADLPRLGDPFFQVGGGYGR 534

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             EGTGLGL + + +   + G   + S P KGT + +  PL
Sbjct: 535 SHEGTGLGLSVVRGLAGLHGGAVSVESAPGKGTAVTVTLPL 575



 Score = 40.4 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 28/273 (10%), Positives = 66/273 (24%), Gaps = 16/273 (5%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           DA+G + E S    + +G  A ++ G  L D   I            +            
Sbjct: 226 DANGRVLEASGSAARFVGAEASRLRGHGLLDRVHIGDRPALLQAISDVAAHGAPATVPFR 285

Query: 150 WPIEGTNLYVPIDLAA--LPIYSRNREFSGFRG---FGIVHVNRVDNDPRALGKRLDKKF 204
             ++         + A            +G  G     +               R   + 
Sbjct: 286 LHLDAARGDGSRTIFAEMRAHRIEAG-LAGANGSTVVAVTRDVSEHRRHAQELDRARAEA 344

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS-SLTEYYAHKDDVLKTEKYPLLT 263
               E+K    +    +              +  + + SL+   + +   +  +    L 
Sbjct: 345 ERADEVKTHFLATVSHELRTPLNAIIGFSDVLGGEGAVSLSPERSREYAGIIAQSGRHLL 404

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTL--------QNNSKESFEYLSHRNHPSLSAYF 315
              ++L +       + +   +      L        +  +  S   L+    P+  A  
Sbjct: 405 DVVNTLLDISRIRGGHFDFQPEPVDVEALIRGCCDLMRLKADASGITLTSAPVPAGCALV 464

Query: 316 DEGENLTPETVDKCPIPF-FVYSHGNLFYANPS 347
            +        ++       F    G +      
Sbjct: 465 ADARACRQMLINLISNAVKFTPRGGRVEVMVRR 497


>gi|212640657|ref|YP_002317177.1| signal transduction histidine kinase [Anoxybacillus flavithermus
           WK1]
 gi|212562137|gb|ACJ35192.1| Signal transduction histidine kinase [Anoxybacillus flavithermus
           WK1]
          Length = 604

 Score =  331 bits (849), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 87/390 (22%), Positives = 166/390 (42%), Gaps = 25/390 (6%)

Query: 426 ENMPQNGIEPEDVDTRINKRKM--EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           + + Q  +   ++  ++ + +   E E  +L S+L   +DG+   +R+G I+  N A   
Sbjct: 235 DEIGQLALSFNNLTKKLQEAQATTEGERRKLESVLTHMTDGVIATDRKGRIILINDAALN 294

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +     E +L  P    L  +        + E  +L L  + ++             L +
Sbjct: 295 ILNVSRETVLSAPIVTVLGLDEQYTFETLIEERETLILDFSTDEEMYILRAS-----LSV 349

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
           I K+    +   + +HDI+E ++                  + +F+A VSHE+RTPLT +
Sbjct: 350 IQKEKGLVNGLIVVLHDITEHEKI--------------DRDRREFVANVSHELRTPLTTM 395

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
             + E + +  +          +          ++ +VNDLL +SK++S    L    V 
Sbjct: 396 RSYLEALADGAWR--DEEIAPRFIEVTQNETERMIRLVNDLLQLSKLDSKDYKLKKTRVH 453

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
                 + I   +    ++ +     F +    +  D   + Q+  NI+SNA+ ++P GG
Sbjct: 454 FIPYFHKVIDRFE-LTKKENVSFVRDFPDEKIIVYMDEDKITQVFDNIISNALKYSPQGG 512

Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
            I         + + + V+D GVG+   +L K  + F ++  ++  +  GTGLGL +AK 
Sbjct: 513 TITFRVKKK-GDYIEVSVKDEGVGIPKSDLSKIFERFYRVDKARSRKLGGTGLGLAIAKE 571

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
           +V A+ G+ +  S   KGT I    P+   
Sbjct: 572 VVVAHGGRIWAESQERKGTTIYFTLPIEQQ 601



 Score = 40.4 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/161 (11%), Positives = 38/161 (23%), Gaps = 12/161 (7%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAG--- 364
               A  +         +             G +   N + L +        +       
Sbjct: 252 QEAQATTEGERRKLESVLTHMTDGVIATDRKGRIILINDAALNILNVSRETVLSAPIVTV 311

Query: 365 -GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
            GL        L +      +    +D       A L  IQ  +     +  +  +    
Sbjct: 312 LGLDEQYTFETLIEERETLILDFS-TDEEMYILRASLSVIQKEKGLVNGLIVVLHDITEH 370

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
              +  +               ++   +  + S LEA +DG
Sbjct: 371 EKIDRDRREFVANVSH------ELRTPLTTMRSYLEALADG 405


>gi|73748783|ref|YP_308022.1| sensor histidine kinase/response regulator [Dehalococcoides sp.
            CBDB1]
 gi|73660499|emb|CAI83106.1| sensor histidine kinase/response regulator [Dehalococcoides sp.
            CBDB1]
          Length = 1262

 Score =  331 bits (849), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 110/750 (14%), Positives = 243/750 (32%), Gaps = 55/750 (7%)

Query: 87   WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP--NNHIGDLLKRQNTW- 143
            W  D    L   S+   +  G  A +++ +       +    P  +  + +L+K+   + 
Sbjct: 406  WEFDLANGLVHPSDGAREIYGLKA-EILTIPFVQKVPVPEDRPAMDKALNNLIKQNIPYD 464

Query: 144  YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                   P +G  LY+     ++  +   R       FG +           L +  + +
Sbjct: 465  IEFKIKRPTDGAILYI----HSIAEFDSKRNVV----FGTIQDITKRKQAEELLRESEAR 516

Query: 204  FSHLHEIKKGHSSVEKEKYDIFSQQSPP--PHLRMKNKVSSLTEYYAH---KDDVLKTEK 258
            F    +     +++       +              ++ +SL                  
Sbjct: 517  FRSTFDQSPIGAAIYGLDLKYWQVNEKFCQMLGYSASEFTSLKVSDITNSDDFAKDIIHL 576

Query: 259  YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
              L   E S     + +   + + +        +++ +     YL+     +     ++ 
Sbjct: 577  NRLKNGEISRYETDKRYLQKSGSIFWAHLSVAGIRDVTGNLLYYLAMIVDITTRKAAEDA 636

Query: 319  ENLTPETVDKCPIPFFVY--SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
                    +             G L  AN + +    Y     +           + K+ 
Sbjct: 637  LQKYKLIAEDSRDIILFMNKETGQLLEANSAAVKAYGYSREQLL-----------SMKIQ 685

Query: 377  DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
            +  A +  +L             L       ++          +            I  +
Sbjct: 686  NLRAPQARVLTARQLNQAHIRGMLFETFHQSKDGRVFPVEVSSRGADIEGTTTLINIIRD 745

Query: 437  DVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-----GIILSTNRAVSKLFGYPVED 491
              + +  +  +   +     +  + +D I +         G  +  N A   + GY  ++
Sbjct: 746  TTERKQAENALNESLQNYQVLFNSVTDAILVHQPAADYSAGKFIEVNDAALAMLGYSRKE 805

Query: 492  ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII--IKKLP 549
            +L+      + +     ++ +   I  ++    +       TK  K + + +   + K  
Sbjct: 806  LLQITPMDLMSKGKYP-VSAFADNIRYIEKNTEVVSEFAMETKSGKTIPVELHSRMFKFG 864

Query: 550  FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS--HKSDFLARVSHEIRTPLTAIIGFS 607
                      DISE K+ + +    +  +E  S      +  A ++HEI  PLT +IGF+
Sbjct: 865  GKRTVITLARDISERKKLEEEQKKLRYQSEMSSRLAAVGEMAAGIAHEINNPLTGVIGFA 924

Query: 608  EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
             ++  +   P      ++    I+     V++IV  +L  ++    +       V++ E 
Sbjct: 925  SILMEREDLPAD---VMDELQIINSGSQRVVEIVKRMLTFAR----QAKPVRSSVNITEL 977

Query: 668  VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA---IHFTPSGGQ 724
            +   + L         I +   +  ++P +  D   ++Q+ LN++ NA   +      G 
Sbjct: 978  IDSTLDLRSYVLKTANIEVVRHYEPDLPLLTVDSGQIQQVILNLILNAEYSMKKAHEKGI 1037

Query: 725  IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
            + IS      E V +  RD G+GM+   L K  +PF    +     GEGTGLGL L+  +
Sbjct: 1038 LTISVKKE-GEWVRMSFRDNGLGMSAETLGKLFQPFFTTKDP----GEGTGLGLSLSHGI 1092

Query: 785  VDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
            +  + G     S   +G    I  P+  + 
Sbjct: 1093 ILEHEGTIRGESILGEGAEFTIELPIKPSD 1122



 Score =  127 bits (318), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 51/507 (10%), Positives = 137/507 (27%), Gaps = 31/507 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D+ G   E+++     +G    ++IG    +      +D       + K   T   +  
Sbjct: 154 LDSEGRFLEVNQVWLDDMGYKREEVIGHWFGEFLQPDQVDLFRKRFPVFKATGTADTEFY 213

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           +   +G+   V +  +       N  F   +    +      +      +   +K+  L 
Sbjct: 214 MNRKDGS--VVLMAFSGKIACDANGNFK--QTHCALQDITQRHLADEAIRESQRKYQTLF 269

Query: 209 EIKKGHSSV------EKEKYDIFSQQSPPPHLRMKNKV---SSLTEYYAHKDDVLKTEKY 259
           E     + V      E     +         L   ++     S    + H    L +++ 
Sbjct: 270 ESIGEAAFVCYINNREWADGFVELNAVACDMLGYTHEELLKISARNLFFHPSSGLLSKEI 329

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFG--TLQNNSKESFEYLSHRNHPSLSAYFDE 317
                 +  +  + +    + +  + +  F    LQ                 ++   ++
Sbjct: 330 TDELYAQKMVTRECNLPHKDGHNISVEVTFHIFDLQGRPAVLILAHDITIRKKIARELEQ 389

Query: 318 GENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
                 +        ++ +   N L + +     +        ++        +    + 
Sbjct: 390 SHRRLVKAEKVAGFGYWEFDLANGLVHPSDGAREIYG------LKAEILTIPFVQKVPVP 443

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           ++       L    +  I         +      L +  I    + +        G   +
Sbjct: 444 EDRPAMDKALNNLIKQNIPYDIEFKIKRPTDGAILYIHSIAEFDSKRNV----VFGTIQD 499

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
               +  +  +     +  S  + +  G AI   +      N    ++ GY   +     
Sbjct: 500 ITKRKQAEELLRESEARFRSTFDQSPIGAAIYGLDLKYWQVNEKFCQMLGYSASEFTSLK 559

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--- 553
            +     +  +    +L  +         E       K   +    + +  +   +    
Sbjct: 560 VSDITNSDDFAKDIIHLNRL-KNGEISRYETDKRYLQKSGSIFWAHLSVAGIRDVTGNLL 618

Query: 554 -YSLTMHDISEWKQEKNKLSHAKKIAE 579
            Y   + DI+  K  ++ L   K IAE
Sbjct: 619 YYLAMIVDITTRKAAEDALQKYKLIAE 645



 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 46/514 (8%), Positives = 132/514 (25%), Gaps = 51/514 (9%)

Query: 89  IDAH-GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
           +DA+ G + + +  L   +G    +++G  L ++     I  +     +L+ +     + 
Sbjct: 29  LDANTGKIADANPFLLNILGYAQEEILGKELWEIGIFKDIASSRKAFAVLQEKEYIRYED 88

Query: 148 TLWP-IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                  G    V        +               +           L ++ ++++  
Sbjct: 89  LPLKTKNGQIQQVEFVSNVYWVGDEK------IIQCNIRDITDRKRAEELLRKTEERYRE 142

Query: 207 LHEIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
            ++           +                 + +V         + D +   +      
Sbjct: 143 FYQKSPIGYQSLDSEGRFLEVNQVWLDDMGYKREEVIGHWFGEFLQPDQVDLFRKRFPVF 202

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF-----EYLSHRNHPSLSAYFDEGE 319
           + +   + E +            + G +  ++  +F                     E +
Sbjct: 203 KATGTADTEFYMNRKDGSVVLMAFSGKIACDANGNFKQTHCALQDITQRHLADEAIRESQ 262

Query: 320 NLTPETVDKCPIPFFV------YSHGNLFYANPSFLLLTKYKSVDDI----------EIA 363
                  +      FV               N     +  Y   + +            +
Sbjct: 263 RKYQTLFESIGEAAFVCYINNREWADGFVELNAVACDMLGYTHEELLKISARNLFFHPSS 322

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
           G LS  +     +     +   L   D   I+     H        ++ +          
Sbjct: 323 GLLSKEITDELYAQKMVTRECNLPHKDGHNISVEVTFHIFDLQGRPAVLILAH------- 375

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
                       +    +   R++E    +L    +    G    +    ++  +    +
Sbjct: 376 ------------DITIRKKIARELEQSHRRLVKAEKVAGFGYWEFDLANGLVHPSDGARE 423

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           ++G   E +                M+  L  ++  ++   +E   +    +  +L +  
Sbjct: 424 IYGLKAEILTIPFVQKVPVPEDRPAMDKALNNLIKQNIPYDIEFK-IKRPTDGAILYIHS 482

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI 577
           I +     +    T+ DI++ KQ +  L  ++  
Sbjct: 483 IAEFDSKRNVVFGTIQDITKRKQAEELLRESEAR 516



 Score =  101 bits (252), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 47/402 (11%), Positives = 112/402 (27%), Gaps = 25/402 (6%)

Query: 197 GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS-----LTEYYAHKD 251
            +  + ++  L E  +    +        +  +P     +           L E    KD
Sbjct: 8   LEASELRYRRLFETAQDGILILDANTGKIADANPFLLNILGYAQEEILGKELWEIGIFKD 67

Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT--LQNNSKESFEYLSHRNHP 309
                + + +L  +E    E     T N      +       + +            +  
Sbjct: 68  IASSRKAFAVLQEKEYIRYEDLPLKTKNGQIQQVEFVSNVYWVGDEKIIQCNIRDITDRK 127

Query: 310 SLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
                  + E    E   K PI +  + S G     N  +L    YK  + I    G   
Sbjct: 128 RAEELLRKTEERYREFYQKSPIGYQSLDSEGRFLEVNQVWLDDMGYKREEVIGHWFGE-- 185

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
               P   D    +  +   +          ++       + + M F      +      
Sbjct: 186 -FLQPDQVDLFRKRFPVFKAT--GTADTEFYMNR---KDGSVVLMAFSGKIACDANGNFK 239

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI-----ILSTNRAVSK 483
             +    +     +    +     +  ++ E+  +   +            +  N     
Sbjct: 240 QTHCALQDITQRHLADEAIRESQRKYQTLFESIGEAAFVCYINNREWADGFVELNAVACD 299

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           + GY  E++L+          +  +++  +T+   L  ++ + +      K+   +S+ +
Sbjct: 300 MLGYTHEELLKISARNLFFHPSSGLLSKEITD--ELYAQKMVTRECNLPHKDGHNISVEV 357

Query: 544 I--IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
              I  L       +  HDI+  K+   +L  + +   K   
Sbjct: 358 TFHIFDLQGRPAVLILAHDITIRKKIARELEQSHRRLVKAEK 399



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 26/292 (8%), Positives = 75/292 (25%), Gaps = 38/292 (13%)

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
               +  E       +       +     G +  ANP  L +  Y   + +        +
Sbjct: 5   RLGLEASELRYRRLFETAQDGILILDANTGKIADANPFLLNILGYAQEEILGKELWEIGI 64

Query: 370 LDAPKLSDNN----------AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
                 S               + + L   +         +  + W  +  +        
Sbjct: 65  FKDIASSRKAFAVLQEKEYIRYEDLPLKTKNGQIQQVEF-VSNVYWVGDEKIIQCN---- 119

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
                           +  D +  +  +     +     + +  G   ++ EG  L  N+
Sbjct: 120 --------------IRDITDRKRAEELLRKTEERYREFYQKSPIGYQSLDSEGRFLEVNQ 165

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
                 GY  E+++   F  FL+ +   +         +       +     + K+  ++
Sbjct: 166 VWLDDMGYKREEVIGHWFGEFLQPDQVDLFRKRFPVFKATGTA---DTEFYMNRKDGSVV 222

Query: 540 SLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
            +    K    ++         + DI++       +  +++  +       +
Sbjct: 223 LMAFSGKIACDANGNFKQTHCALQDITQRHLADEAIRESQRKYQTLFESIGE 274


>gi|239906733|ref|YP_002953474.1| putative sensor histidine kinase [Desulfovibrio magneticus RS-1]
 gi|239796599|dbj|BAH75588.1| putative sensor histidine kinase [Desulfovibrio magneticus RS-1]
          Length = 572

 Score =  331 bits (849), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 108/584 (18%), Positives = 214/584 (36%), Gaps = 64/584 (10%)

Query: 279 NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS- 337
                   +    L          +S   +P L     E        +D+     F+   
Sbjct: 2   PAPADPSPRADERLTRLLGFGEHSVSKSYYPELRRRL-EELERFRSLLDQTGDAIFLVDV 60

Query: 338 -HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA 396
             G +  A  +   + +       +  G L  L     L  +  ++   L+       A 
Sbjct: 61  ATGRIADAAGAAGAMLR-------QERGDLRGLPFEHFLPPDAVLRLRGLF--SGDFAAG 111

Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
                  +   E   ++      +  Q         +  +  + + N+  +     +   
Sbjct: 112 RVETSLSRPGDEAGGSLPVEMTFRLAQGEAGRVAVIVARDVTERKKNEEALRRAEERYRG 171

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           I+E  ++GI      G +++ N A++ + GY   D L +     +++   +  + +    
Sbjct: 172 IVENAAEGIFQSTLSGRLMNANPALAAILGYANPDDLLRHVKSVVDEVVAAPEDRHRIRS 231

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLS 572
                 +         TK    +   I  +++         +  ++ D++  KQ +  L 
Sbjct: 232 ELDRYDEVKNLEVQLITKSGAHIWGLINARRIRGEEGTPERFDGSVQDVTIRKQAEQTLI 291

Query: 573 HAKKIAEKESSHK--------------------------------SDFLARVSHEIRTPL 600
                 E+  + +                                SDFL+ VSHEIRTPL
Sbjct: 292 RYHDELEQRVAERTAELTRINERLVHEVTIRKRAEEAAEAANRAKSDFLSMVSHEIRTPL 351

Query: 601 TAIIGFSEVIK------------NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
           T+++GF+ +IK            +     L   +  +  + I   G  +  ++ND+LD++
Sbjct: 352 TSVLGFAVLIKKRLARLLPASAVDTPKKRLQAEQIQDNLDIIVAEGERLKHLINDVLDLA 411

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIA 708
           K+E+GKM    EPV   E V   ++          I++ T     +P +  D   + Q+ 
Sbjct: 412 KLEAGKMAFKSEPVDPAEVVRHVMNASAGLLQNTNIVLDTRIEGRLPLVRGDRDRLIQVL 471

Query: 709 LNILSNAIHFTPSGGQIIISTTHTSNEE-VILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
           +N++SNAI FT  G    ++    +    +++ V DTG+G+   E  K  + F QI  + 
Sbjct: 472 VNLVSNAIKFTDQG---YVACRARAQGNTIVIEVSDTGIGIPESEQGKVFEKFNQIGGTL 528

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
             + +GTGLGL + K +V+++ G+ +  S P  G+      P+ 
Sbjct: 529 TNKPKGTGLGLTICKHIVESHGGRIFCVSRPGAGSTFTFTLPIA 572



 Score = 47.7 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/138 (13%), Positives = 37/138 (26%), Gaps = 6/138 (4%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN--HIGDLLKRQNTW 143
            +     G L   +  L   +G      +   +  V D +   P +   I   L R +  
Sbjct: 180 IFQSTLSGRLMNANPALAAILGYANPDDLLRHVKSVVDEVVAAPEDRHRIRSELDRYDEV 239

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG-KRLDK 202
                   I  +  ++   + A  I         F G   V    +         +  D+
Sbjct: 240 KNLEVQL-ITKSGAHIWGLINARRIRGEEGTPERFDG--SVQDVTIRKQAEQTLIRYHDE 296

Query: 203 KFSHLHEIKKGHSSVEKE 220
               + E     + + + 
Sbjct: 297 LEQRVAERTAELTRINER 314


>gi|218528744|ref|YP_002419560.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium chloromethanicum CM4]
 gi|218521047|gb|ACK81632.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium chloromethanicum CM4]
          Length = 646

 Score =  331 bits (849), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 115/581 (19%), Positives = 210/581 (36%), Gaps = 18/581 (3%)

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
           V       A   D             E S+  + +         ++      +       
Sbjct: 3   VLRKDGTLASLFDSRLAGLVHASALAEPSVRFRHER-----FLISRLATGAVMMAGLPPY 57

Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDD 359
             +    +     A       L    V       +V    +        + L        
Sbjct: 58  LVWRGVPSGLEAIAIASLFLPLLAAVVLSRTGSLWVAHALSSLGLTGIVVCLAALTGGAS 117

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
              A  L  +     +S +          +     A +  L         +L        
Sbjct: 118 SAAAIWLVAVPLEAMVSGSRRATIAASVIA--VVGAFAVALSGYLPVGALALDWPNAIVM 175

Query: 420 KANQFPENMPQNGIEPEDVDTRIN-KRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
                           E +      + +M+    +   +L A  D +   +  G +L  +
Sbjct: 176 PVFAVTAIGHIAAQAMEHMRREGEWRARMQDNEARDRLLLSAIDDLVTWHDANGRVLEAS 235

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE-- 536
            + ++  G     +        +       +   ++++ +     T+             
Sbjct: 236 GSAARFVGAEASRLRGHGLLDRVHIGDRPALLQAISDVAAHGAPATVPFRLHLDAARGDG 295

Query: 537 -KLLSLRIIIKKLP------FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
            + +   +   ++         S       D+SE ++   +L  A+  AE+    K+ FL
Sbjct: 296 SRTIFAEMRAHRIEAGLAGANGSTVVAVTRDVSEHRRHAQELDRARAEAERADEVKTHFL 355

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
           A VSHE+RTPL AIIGFS+V+  +    L   R  EYA  I +SG  +LD+VN LLDIS+
Sbjct: 356 ATVSHELRTPLNAIIGFSDVLGGEGAVSLSPERSREYAGIIAQSGRHLLDVVNTLLDISR 415

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709
           I  G  +   EPV ++  +     L++L A+   I + ++       ++AD R+ +Q+ +
Sbjct: 416 IRGGHFDFQPEPVDVEALIRGCCDLMRLKADASGITLTSAPVPAGCALVADARACRQMLI 475

Query: 710 NILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
           N++SNA+ FTP GG++ +         + + V D G+G+T  +L +   PF Q+      
Sbjct: 476 NLISNAVKFTPRGGRVEVMVR-RGGAYLDIVVSDDGIGITEADLPRLGDPFFQVGGGYGR 534

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             EGTGLGL + + +   + G   + S P KGT + +  PL
Sbjct: 535 SHEGTGLGLSVVRGLAGLHGGAVSVESAPGKGTAVTVTLPL 575



 Score = 40.4 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 28/273 (10%), Positives = 66/273 (24%), Gaps = 16/273 (5%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           DA+G + E S    + +G  A ++ G  L D   I            +            
Sbjct: 226 DANGRVLEASGSAARFVGAEASRLRGHGLLDRVHIGDRPALLQAISDVAAHGAPATVPFR 285

Query: 150 WPIEGTNLYVPIDLAA--LPIYSRNREFSGFRG---FGIVHVNRVDNDPRALGKRLDKKF 204
             ++         + A            +G  G     +               R   + 
Sbjct: 286 LHLDAARGDGSRTIFAEMRAHRIEAG-LAGANGSTVVAVTRDVSEHRRHAQELDRARAEA 344

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS-SLTEYYAHKDDVLKTEKYPLLT 263
               E+K    +    +              +  + + SL+   + +   +  +    L 
Sbjct: 345 ERADEVKTHFLATVSHELRTPLNAIIGFSDVLGGEGAVSLSPERSREYAGIIAQSGRHLL 404

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTL--------QNNSKESFEYLSHRNHPSLSAYF 315
              ++L +       + +   +      L        +  +  S   L+    P+  A  
Sbjct: 405 DVVNTLLDISRIRGGHFDFQPEPVDVEALIRGCCDLMRLKADASGITLTSAPVPAGCALV 464

Query: 316 DEGENLTPETVDKCPIPF-FVYSHGNLFYANPS 347
            +        ++       F    G +      
Sbjct: 465 ADARACRQMLINLISNAVKFTPRGGRVEVMVRR 497


>gi|18310739|ref|NP_562673.1| sensory box histidine kinase [Clostridium perfringens str. 13]
 gi|18145420|dbj|BAB81463.1| two-component sensor histidine kinase [Clostridium perfringens str.
           13]
          Length = 571

 Score =  331 bits (849), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 84/375 (22%), Positives = 171/375 (45%), Gaps = 39/375 (10%)

Query: 444 KRKMEIEVMQ-------LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             ++EI + +       L +IL++   G+   +R+  +L  N    K+FG   E I  K 
Sbjct: 226 AEQLEITMERFKDKQNGLEAILKSMGSGVIAFDRDMNVLMINPYAKKIFGISGEIIGNKL 285

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR-IIIKKLPFSSCYS 555
                ++            +         E     +  + K+L +R   I   P      
Sbjct: 286 LDYITDKEVLKAFFDEKDRV---------EIEVNYND-DPKILKIRKASIINEPEIIGTV 335

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
           + + DI++ K+ +              + +S F+A +SHE++TPLT+I GF+E ++    
Sbjct: 336 VVIQDITDIKKLE--------------NMRSQFVANISHELKTPLTSIKGFAETLR---- 377

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
               +    ++ + ID   + +  ++ D+L + +IE  +  +  E  ++DE + +   L+
Sbjct: 378 YVEDDETRNKFLSIIDEESDRLARLLEDILCLYEIEQKRSTI-LEEFNVDEEIEKVYMLL 436

Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
              A +K + I     +N   ++ D    KQ+ LN++SN++ +T  GG++ +  ++  + 
Sbjct: 437 NDQAKKKGVEIFLDTNSNC-VLMGDKDKFKQMLLNLVSNSVKYTEKGGKVRVE-SYNRDM 494

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            +IL + D G+G++  +L +  + F ++  ++     GTGLGL + K +V    G+  + 
Sbjct: 495 NLILVIEDNGIGISAEDLPRIFERFYRVDKARSRESGGTGLGLAIVKHIVRLFDGEINVT 554

Query: 796 STPAKGTLIEIIFPL 810
           S    GT I I  P+
Sbjct: 555 SELGVGTKIVITIPI 569


>gi|323495069|ref|ZP_08100158.1| multi-sensor hybrid histidine kinase [Vibrio brasiliensis LMG
           20546]
 gi|323310726|gb|EGA63901.1| multi-sensor hybrid histidine kinase [Vibrio brasiliensis LMG
           20546]
          Length = 1039

 Score =  331 bits (849), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 120/634 (18%), Positives = 223/634 (35%), Gaps = 40/634 (6%)

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
              +        ++              L  +  V S        +   +T       S 
Sbjct: 115 SSTDYLNHQFDGQRWLKSGVFDNDRLSPLFTRETVISTPSPDPFLNKPTETLVSQWFVS- 173

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
              + + +      L+   +      L                 S  A  D+    +  +
Sbjct: 174 -PIIADDKVIGWALLSFDWQASMLELLNTAYARLETA---HYPISQIAVTDDVSKYSQAS 229

Query: 326 VDKCPIPFFVYSHGNLFYANPS-------FLLLTKYKSVDDIEIAGGL-------STLLD 371
           V + P            + + +       F   T  K +DDI+ A  +            
Sbjct: 230 VGRVPPNIATLDASKNMFFSQANYLITVTFNAATALKGLDDIKQAMMIIFAIAAALLTFS 289

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL--AMTFIPFEKANQFPENMP 429
                  + IKP+         +++    H +  +    +   +T I           + 
Sbjct: 290 MWFTLRASIIKPIDSLTKHILSLSSEGETHRLPKSNNREMNSIVTAINQLLQQLQNNTIS 349

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
              ++ E    R +++   +   +L +IL+  +DGI  I+++G ILS N+A   +FGY  
Sbjct: 350 LQRLDEEIDLKRQSEQTQTLLSQKLEAILDTAADGIVTIDKQGRILSFNQAAQMMFGYTE 409

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLD---------LRQTLEKITLGSTKEEKLLS 540
           ++ +  P  V +     +    ++ + L+               L +      K+     
Sbjct: 410 QEAIGMPVEVLMPATEAARHQGHIEKYLATGKGKIIGVTDQDGRLGRELQAINKQGHTFP 469

Query: 541 LRIIIKKLPFSSCYS--LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
           + + I ++  +        + DIS  KQ +  L  AK+ AE+ +  KS+FLA +SHEIRT
Sbjct: 470 ILLSIARVETADGILFSGLIKDISIQKQAELALITAKEQAEQAAKSKSEFLAVMSHEIRT 529

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
           P+  IIG    + +       N      A     S   +L ++ND+LD SKI++ K+ L 
Sbjct: 530 PMNGIIG----MLDLLLENDLNNSQSHQAYLAHSSALSLLALLNDILDFSKIDANKLELE 585

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTS-FANNIPRILADLRSVKQIALNILSNAIH 717
            +  +L   + E    +        + I           +L D   ++QI  N++SNA+ 
Sbjct: 586 QQHFNLRHMLGEFAESMAASLTNPNVEIILDTIEVEHSMVLGDSTRIRQIFANLVSNALK 645

Query: 718 FTPSGGQ-IIISTTHTSNEEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           FT  G   I    +        L   ++D+G+G+ +  +      F Q+  S   R  GT
Sbjct: 646 FTERGEVVITAKLSEHDANTWRLDGSIKDSGIGIPSSRINSLFDKFSQVDASTTRRYGGT 705

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           GLGL + K +     G   + S    G+      
Sbjct: 706 GLGLAIVKKLCQIMHGDVDVTSEVGMGSEFSFHI 739



 Score = 41.9 bits (97), Expect = 0.45,   Method: Composition-based stats.
 Identities = 19/150 (12%), Positives = 39/150 (26%), Gaps = 20/150 (13%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI--LHIDPNNHIGDLLKRQ------ 140
           ID  G +   ++      G    + IGM + +V            HI   L         
Sbjct: 388 IDKQGRILSFNQAAQMMFGYTEQEAIGMPV-EVLMPATEAARHQGHIEKYLATGKGKIIG 446

Query: 141 -----NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA 195
                     +      +G     PI L+   + + +    G    G++    +      
Sbjct: 447 VTDQDGRLGRELQAINKQGHTF--PILLSIARVETAD----GILFSGLIKDISIQKQAEL 500

Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIF 225
                 ++     + K    +V   +    
Sbjct: 501 ALITAKEQAEQAAKSKSEFLAVMSHEIRTP 530


>gi|91203275|emb|CAJ72914.1| conserved hypothetical protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 818

 Score =  331 bits (849), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 91/261 (34%), Positives = 148/261 (56%), Gaps = 7/261 (2%)

Query: 563 EWKQEK--NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           E +  +    L  A    ++ +  KS+FLA +SHE+RTPL AIIGF+EV+K++  G L N
Sbjct: 280 EQRITEKTEHLQKAVSALKRANRMKSEFLANMSHELRTPLNAIIGFAEVLKDKLCGEL-N 338

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
               ++   I  SG  +L ++ND+LD+SKIE+GKM L +E   + +A+ +  ++++  A 
Sbjct: 339 AEQEDFVKDIHSSGRHLLQMINDILDLSKIEAGKMELQYESFLVSDAIEDVYTILKGLAK 398

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
           +K++ ++T    ++  I AD    KQI  N+LSN+I FTP  G I  +       ++ + 
Sbjct: 399 KKQLQLKTVIQEDVKDIEADRVKFKQILYNLLSNSIKFTPQNGTITTNAAIVD-GKMQVS 457

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V D+G+G+   + EK  K F Q  +S   + EGTGLGL L + +V+ + GK ++ S   K
Sbjct: 458 VSDSGIGIKPEDREKVFKEFWQADSSFSRKYEGTGLGLALTRRIVEMHGGKIWLKSEYGK 517

Query: 801 GTLIEIIFPLYDTS---HPHD 818
           G+      P+  +    HP D
Sbjct: 518 GSTFYFTIPVTKSQRILHPED 538


>gi|323496760|ref|ZP_08101805.1| histidine kinase [Vibrio sinaloensis DSM 21326]
 gi|323318185|gb|EGA71151.1| histidine kinase [Vibrio sinaloensis DSM 21326]
          Length = 1098

 Score =  331 bits (849), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 101/587 (17%), Positives = 201/587 (34%), Gaps = 59/587 (10%)

Query: 277 TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC------- 329
            ++        +   +   +++S  Y+  +   +      E    +   + +        
Sbjct: 103 AVDGEDKWLSLHVEVMNQKAQQSKYYVLRQTDVTQIHLVREELRHSNAQLSQLVSSQSRK 162

Query: 330 ------PIPFF----------VYSHGNLFYANPSFLLLTKYKSVDDIE-IAGGLSTLLDA 372
                  I             +     L   N + L L        I      L    D 
Sbjct: 163 LHQHDTQIGVMFEQSLDNMLLLDDDLTLIDINDAALKLFGRSKQKIIGLSVSSLLNDFDD 222

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
             +  + A   +       T +     +     +            +             
Sbjct: 223 QVIKASLATAEMHREVPLDTMLKVKNHIGLSSLSGSVRYITIRNHDK----------IVL 272

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATS-------DGIAIINREGIILSTNRAVSKLF 485
              +     + ++++     +L  +L   +        GI   +     L+ +  + +++
Sbjct: 273 TLRDVHSQHLVQKELRRSQSELERVLRNLNLATQAGGIGIWSWDFTTNELAWDERMYEMY 332

Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
           G    +                +         + +                ++  ++   
Sbjct: 333 GVDPNNCENNYAMWQERVLDEDIYPAEQALNDARERLSQFNAEFRIQLPSGEIRWIKAAA 392

Query: 546 KKLPFSSC-----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
             L   +            DI++ K  +    H  + A   S  KS FLA +SHEIRTP+
Sbjct: 393 DVLFDHNGENPIGMGGVNIDITKEKNAQENFRHESETALAASEAKSMFLANMSHEIRTPM 452

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
             ++G   ++         N         I  S   +L I+ND+LD SKIE+G+M+L   
Sbjct: 453 NGVVGMLSLLSETEL----NTEQKNMVTTIKDSALTLLHIINDILDFSKIEAGQMSLESV 508

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFT 719
           PV L + +   + ++ L A+ K I +  ++  N+P++ ++D   + Q+ LNI+ NA+ FT
Sbjct: 509 PVELQKLIERTLDVLCLQASNKGIELYLTYDANLPKVIMSDSVRLSQVLLNIIGNAVKFT 568

Query: 720 PSG----GQIIISTTHTSNE---EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
            S     G++ +S T   +E    + + V D G+GMT  ++++    F Q   S      
Sbjct: 569 DSNDDVKGKVWVSATLNDHEIAPYIEIIVEDNGIGMTEEQMKRLFNAFTQADTSTTRLYG 628

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP-LYDTSHPHD 818
           GTGLGL +  ++++   G   + S    G+   I  P +     PHD
Sbjct: 629 GTGLGLSITNSLLELMGGNIKVDSHHGSGSRFYIELPFIPAEDEPHD 675



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 36/283 (12%), Positives = 82/283 (28%), Gaps = 34/283 (12%)

Query: 325 TVDKCPIPFFVYSH----GNLFYANPSFLLLTKYKSVDDIE--IAGGLSTLLDAPKLSDN 378
            +D       ++        +FYANPSF+   K      I   ++   S   + P +   
Sbjct: 27  ILDLLSEGLIIFDGQPDSHAIFYANPSFVDYYKTPLNQIIGCKVSDFFSRYTETPFIQAL 86

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
              +   L       IA                 ++        +  ++      + +  
Sbjct: 87  LNSQDAHLSIPLNVKIAV----------DGEDKWLSLHVEVMNQKAQQSKYYVLRQTDVT 136

Query: 439 DTRINKRKMEIEVMQLCSILEA---------TSDGIAI---------INREGIILSTNRA 480
              + + ++     QL  ++ +         T  G+           ++ +  ++  N A
Sbjct: 137 QIHLVREELRHSNAQLSQLVSSQSRKLHQHDTQIGVMFEQSLDNMLLLDDDLTLIDINDA 196

Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
             KLFG   + I+    +  L      V+   L              + + +      LS
Sbjct: 197 ALKLFGRSKQKIIGLSVSSLLNDFDDQVIKASLATAEMHREVPLDTMLKVKNHIGLSSLS 256

Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
             +    +       LT+ D+      + +L  ++   E+   
Sbjct: 257 GSVRYITIRNHDKIVLTLRDVHSQHLVQKELRRSQSELERVLR 299



 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 54/145 (37%), Gaps = 8/145 (5%)

Query: 456 SILEATSDGIAIINRE---GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
           SIL+  S+G+ I + +     I   N +    +  P+  I+    + F  + T +     
Sbjct: 26  SILDLLSEGLIIFDGQPDSHAIFYANPSFVDYYKTPLNQIIGCKVSDFFSRYTETPFIQA 85

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH--DISEWKQEKNK 570
           L       L   L    +    E+K LSL + +            +   D+++    + +
Sbjct: 86  LLNSQDAHLSIPLNVK-IAVDGEDKWLSLHVEVMNQKAQQSKYYVLRQTDVTQIHLVREE 144

Query: 571 LSHAKKIAEKESSHKSDFLARVSHE 595
           L H+     +  S +S  L +  H+
Sbjct: 145 LRHSNAQLSQLVSSQSRKLHQ--HD 167


>gi|119512709|ref|ZP_01631781.1| two-component hybrid sensor and regulator [Nodularia spumigena
            CCY9414]
 gi|119462629|gb|EAW43594.1| two-component hybrid sensor and regulator [Nodularia spumigena
            CCY9414]
          Length = 1287

 Score =  331 bits (849), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 129/828 (15%), Positives = 263/828 (31%), Gaps = 120/828 (14%)

Query: 90   DAHGYLKEISEELPKTIGNYAFKMI-GM-RLCDVSDILHIDPNNH-IGDLLKR--QNTWY 144
            D +G + E ++   + IG     ++ G     +++   H+  +   I +           
Sbjct: 329  DVYGGIHEANDAFLQMIGYTREDLLTGKLNWRNITPPEHVYSDKQGIAEAQGNPNGACTP 388

Query: 145  GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
             +      +G    +P+ +  + +   NRE         +         +    +L+K  
Sbjct: 389  YEKEYIHKDGR--RIPVLVGYVLV-GENRE----ESVVFILDLSERKQAKQQIVQLNKDL 441

Query: 205  SHLHEIKKGHSSVEKEKYDIFSQQS-----PPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
                   +    V      I            P L  +  VSS            +   +
Sbjct: 442  QRRIAELQTLFQVIPIGIGIAEDAECKTIRANPCLAQQLGVSSDENVSLSAPSAERPTSF 501

Query: 260  PLLTSEESSLPEQEDFH-----------------TINLNQYTKKQYFGTLQNNSKESFEY 302
             +       LPE+                       N       ++   L +   +S   
Sbjct: 502  KVYREGRELLPEELPMQYSAAHGVEMLNCELDIVHENGKVVKLLEHVAPLFDEEGDSRGS 561

Query: 303  LSHRNHPSLSAYFDE----GENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKS 356
            +      +     +E     +    + ++  P+P        G + +AN +   L   + 
Sbjct: 562  VGAFLDITERKQVEETIQNQQKWLEDVLNMMPMPLLFIEPGTGRVIFANRAVDDLAGGEF 621

Query: 357  VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR-ENSLAMTF 415
               I +    +         +      +   R  R           + W+  E+  ++  
Sbjct: 622  PKGIPVEEYHTAYYCTDMAGNRIPNDQIPGARIARGE---RLDGLEMDWHTKESVRSIRI 678

Query: 416  IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI---------- 465
                                +  + +  ++   +   +L  +    SD +          
Sbjct: 679  FSDTLPAMHGHPATCVSAFQDITNLKEIEKARTLNYRRLQLLFNTASDLLSSQQPLALIH 738

Query: 466  ---------AIINREGIILSTNRAVSK---------LFGYPVEDI-------LRKPFTVF 500
                       ++     +  N                G   E           +     
Sbjct: 739  SFYQKLAEQIGLD-----VYFNYLAEDHSQVMHLVSFTGVSEEIAKEYECLKFGQSVCGI 793

Query: 501  LEQNTPSVMNHYLTE--------ILSLDLRQTLEKITLGSTKE-EKLLSLRIIIKK-LPF 550
            + Q    +    + +        I SL +        + S +    L        +    
Sbjct: 794  VAQERHPIYIENVQQSTDPKTELIRSLGITAYYGYPLIASARLLGTLCFGSRSCSRFTEN 853

Query: 551  SSCYSLTMHD----ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
                   + D      E       L    +   + +  K +FLA +SHE+R+PL AI+G+
Sbjct: 854  QRGMMQAVSDQIAIAMERSSLIASLQQQTEQLREANRMKDEFLAILSHELRSPLNAILGW 913

Query: 607  SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
            ++++++++   +   +  +    I+R+  +   +V DLLDIS++  GK++LH    +L  
Sbjct: 914  AQLLRSRKLSDI---QIAKAMETIERNARMQTQLVEDLLDISRMIRGKLHLHVCTCNLVP 970

Query: 667  AVSEAISLVQLYANEKRILIRTSF--ANNIPR------ILADLRSVKQIALNILSNAIHF 718
             +  A+  V L A  K I +R S   +  +P+      +  D+  ++QI  N+LSNAI F
Sbjct: 971  LIESAVETVHLAAQAKEIDLRISLIPSPEMPQDHSRFLVSGDIERLQQIIWNLLSNAIKF 1030

Query: 719  TPSGGQIIIST--THTSNE--------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
            TP+GG+I I    +   +E           ++V DTG+G+    L      F Q  +S  
Sbjct: 1031 TPTGGRIEIRLCQSVEDDEKLARTITSYAQIQVIDTGIGIKPEFLPYVFDRFRQADSSST 1090

Query: 769  IRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFPLYDTSH 815
                G GLGL + + +V+ + G   + S    +G    +  PL   S 
Sbjct: 1091 RSYGGLGLGLAIVRHLVELHGGIISVDSQGENEGATFTVKLPLLLESQ 1138



 Score = 90.9 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 52/484 (10%), Positives = 131/484 (27%), Gaps = 38/484 (7%)

Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP----PHLRMKN 238
           I  + R  ++ +   +  ++K     +              I            + R   
Sbjct: 293 ITRLCRQHDEAQKKLRAYEEKLRSFVDANVIGIKFGDVYGGIHEANDAFLQMIGYTREDL 352

Query: 239 KVSSLTEYYAHKDDVLKTEKYPLLTSEE----SSLPEQEDFHTINLNQYTKKQYFGTLQN 294
               L        + + ++K  +  ++     +  P ++++   +  +      +  +  
Sbjct: 353 LTGKLNWRNITPPEHVYSDKQGIAEAQGNPNGACTPYEKEYIHKDGRRIPVLVGYVLVGE 412

Query: 295 NSKESFEYLSHRNHPSLSAY--------FDEGENLTPETVDKCPIPFFVYSHGN--LFYA 344
           N +ES  ++   +    +                         PI   +          A
Sbjct: 413 NREESVVFILDLSERKQAKQQIVQLNKDLQRRIAELQTLFQVIPIGIGIAEDAECKTIRA 472

Query: 345 NPSFLLLTKYKSVDDI---EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401
           NP         S +++     +    T     +       + + +  S    +       
Sbjct: 473 NPCLAQQLGVSSDENVSLSAPSAERPTSFKVYREGRELLPEELPMQYSAAHGVEMLNCEL 532

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
            I       + +        ++  ++    G   +  + +  +  ++ +   L  +L   
Sbjct: 533 DIVHENGKVVKLLEHVAPLFDEEGDSRGSVGAFLDITERKQVEETIQNQQKWLEDVLNMM 592

Query: 462 SDGIAIINR-EGIILSTNRAVSKLF------GYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
              +  I    G ++  NRAV  L       G PVE+     +   +  N          
Sbjct: 593 PMPLLFIEPGTGRVIFANRAVDDLAGGEFPKGIPVEEYHTAYYCTDMAGNRIPNDQIPGA 652

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT-MHDISEWKQEKNKLSH 573
            I   +    LE           +      +  +       ++   DI+  K+ +   + 
Sbjct: 653 RIARGERLDGLEMDWHTKESVRSIRIFSDTLPAMHGHPATCVSAFQDITNLKEIEKARTL 712

Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
             +  +   +  SD L+      + PL  I  F + +  Q    +G   Y  Y       
Sbjct: 713 NYRRLQLLFNTASDLLSS-----QQPLALIHSFYQKLAEQ----IGLDVYFNYLAEDHSQ 763

Query: 634 GNLV 637
              +
Sbjct: 764 VMHL 767



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 54/164 (32%), Gaps = 3/164 (1%)

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
            I          ++K+     +L S ++A   GI   +  G I   N A  ++ GY  ED
Sbjct: 292 VITRLCRQHDEAQKKLRAYEEKLRSFVDANVIGIKFGDVYGGIHEANDAFLQMIGYTRED 351

Query: 492 IL--RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
           +L  +  +               + E                  K+ + + + +    + 
Sbjct: 352 LLTGKLNWRNITPPEHVYSDKQGIAEAQGNPNGACTPYEKEYIHKDGRRIPVLVGYVLVG 411

Query: 550 FSSCYSLTMH-DISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
            +   S+    D+SE KQ K ++    K  ++  +        +
Sbjct: 412 ENREESVVFILDLSERKQAKQQIVQLNKDLQRRIAELQTLFQVI 455


>gi|296418541|ref|XP_002838889.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295634872|emb|CAZ83080.1| unnamed protein product [Tuber melanosporum]
          Length = 1966

 Score =  331 bits (849), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 124/783 (15%), Positives = 227/783 (28%), Gaps = 81/783 (10%)

Query: 98   ISEELPKT-IGNYAFKMIG---MRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIE 153
             S       +G       G       + +      P     D         GK       
Sbjct: 763  ASPGWEGVTLGMTGPHGSGSGSRSWNNSAASTPASPGMERQDEYFGPPPRGGKIFSRQNS 822

Query: 154  G-----TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
            G     + L   I +  L +   +   +G  G       R  +      +      S   
Sbjct: 823  GNVPTLSTLRARIPMVELKVRIEDEGTTGSSGTAKGK-RRESSHAAQRRRADMGMGSSKF 881

Query: 209  EIKKGHSSVEKEKYDIFS--QQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
                                                   +   +   +   K P L+   
Sbjct: 882  PNHTDLRRGTNPNKTPTQHLGAIAAEGASPPVSPGPEIAHQHRRGRGVPRRKRPGLSPGY 941

Query: 267  SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE--SFEYLSHRNHPSLSAYFDEGENLTPE 324
                             +           S        L+    P           L   
Sbjct: 942  PHTLLHSYGADYAATFQSLYATTSLPGAPSGRHGISSKLATSIQPLNEMP-PPSNRLLRT 1000

Query: 325  TVDKCPIPFFVY--SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
             +D  P+  F     +G   + N   L        + I+           P    +   +
Sbjct: 1001 IIDSIPVHVFTALPHNGETTWVNARMLDYRGSTVEELIKGPWDA----LHPDDRGDYVKR 1056

Query: 383  PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
                 R      +       I+                 +     +   G   +  D R+
Sbjct: 1057 WGTAIRK-GEAFS---HQVRIRRFDGIYRWFMIRAVPLRDSRGIIVHWFGTNMDIHDQRL 1112

Query: 443  NK------RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             +       +M     +  S+  ++   +        I   N       G  +   L+  
Sbjct: 1113 AEVDAARQSEMAESESKYRSLANSSPQIVFAATSNDGITYANTQWQGYSGQTLPQALQLG 1172

Query: 497  FTVFLEQNTPS--VMNHYLTEILSL--------------------------DLRQTLEKI 528
            F   +         +      +++                           + + T    
Sbjct: 1173 FMEHVHPADRHKCALPGPGETLVNGLPCLGNSFKMTAGGGNLGASGSGKFEEEKPTFSTE 1232

Query: 529  TLGSTKEEKLLSLRIIIKKLP-----FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
                 K        +    +          +  T  DI+  K  + +L  AK  A+K   
Sbjct: 1233 LRLKDKHGNYRWHLVRCVGVETNFGTGDGQWFGTCTDINNHKLLEQRLKEAKDAAQKTME 1292

Query: 584  HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
             K+ FLA +SHEIRTPL  I G    + +       N   ++Y + I +S + +L ++ND
Sbjct: 1293 SKTRFLANMSHEIRTPLIGISGMVNFLLDTPL----NGEQLDYCHTISQSSDGLLSVIND 1348

Query: 644  LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLR 702
            +LD+SK+E+G M ++ E   ++  + +A  L+   A  K + +     +++P ++  D  
Sbjct: 1349 ILDLSKVEAGMMRMNPEWFRINTLIEDANELLSAMAVAKDLELSFIVEDDVPPVVCGDRV 1408

Query: 703  SVKQIALNILSNAIHFTPSGGQI-----IISTTHTSNEEVILRVR--DTGVGMTNYELEK 755
             ++Q+ LN++ NAI FT  G ++     +I        EV+L+    DTG G    + E 
Sbjct: 1409 RLRQVMLNVIGNAIKFTTKG-EVFSRWSVIKDAQVGEGEVMLQFECHDTGPGFDRKDEEL 1467

Query: 756  AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE----IIFPLY 811
              KPF QI  S      G+GLGL +++ +V+ + G+    S   KG+          P  
Sbjct: 1468 MFKPFSQIDGSSTREHGGSGLGLVISRQLVELHGGRMTAKSQKGKGSTFICSSKFRLPRN 1527

Query: 812  DTS 814
             T 
Sbjct: 1528 PTD 1530


>gi|283852288|ref|ZP_06369560.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           sp. FW1012B]
 gi|283572370|gb|EFC20358.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           sp. FW1012B]
          Length = 735

 Score =  331 bits (849), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 112/621 (18%), Positives = 216/621 (34%), Gaps = 42/621 (6%)

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
                         +    F+   P         VS           V   +    L   
Sbjct: 120 EPFGAVLDPVRDTDQVRRFFTGTRPAVSGPFFGSVSRKLVVAVSVPVVAGGKVTASLRML 179

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
            ++         + L                  S    +        +        +   
Sbjct: 180 SATEAWTHALEDLRLPAEWAALIMDDSGTVVARSLAPQTSAGTKVSLSLQQAIRTASAGM 239

Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIE------IAGGLSTLLDAPKLSDNN 379
           VD       V   G       +F  +  +  V  +        A  + +L          
Sbjct: 240 VDT------VTREG--VPVKTAFAKVPGWGWVVAVGVPMSVLRAPLVRSLWMVCGGGGLL 291

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
            +  +++       +AA   L         + +   +P  +  +        G       
Sbjct: 292 LVVGLLVALWLSRLLAAKVSLAARASAALAAGSDALLPATRVRELDAMGASLGA------ 345

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
               ++ +   + +  ++ E  + GI+++  +G  L  N    ++ GY  E++       
Sbjct: 346 ---AEKTLGESMARFRAVFEQAAVGISLVTPDGRYLQVNDRYREITGYGTEELAGLRPAD 402

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YS 555
                           + +  L            K+  ++   +    +  ++     + 
Sbjct: 403 ITHPGDRGDEEANFERLRAGHLAA-HPWEKRFVRKDGSIVWADLATSPVTDAAGNLLYFI 461

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
             + DIS+ K+    L  AK+ AE+ S  KSDF+A +SHEIRTP+  I+G    +   + 
Sbjct: 462 GVIQDISQRKELTAALCQAKETAERASRAKSDFMANMSHEIRTPMNGIMGMI-HLARLKS 520

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
               +P   +Y +  D S   +L IVND+LD++K+E+GK+ L  EP +L   +  AI  +
Sbjct: 521 ---PDPALAQYLDLADLSARHLLGIVNDVLDLAKMEAGKVRLLREPFALRREIRAAIEPM 577

Query: 676 QLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
           Q  A EK + +  + A ++P  +  D   ++Q+  N++ NA+ FT +G  + I      +
Sbjct: 578 QAAAGEKGLALALAVAPDVPDAVTGDAGRLRQVLANVVGNAVKFTGTG-HVDIRVELDDD 636

Query: 735 E--------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
                     +   VRDTG+G+    L+   + F Q   S  +   G GLGLP+++ +V+
Sbjct: 637 AAGDEAVVRRLRFTVRDTGIGIPADRLDDIFESFEQAHTSAHVLYGGAGLGLPISRRLVE 696

Query: 787 ANMGKFYIFSTPAKGTLIEII 807
              G   + S   +G+     
Sbjct: 697 FMGGTIDVASREGEGSTFTFT 717



 Score = 68.1 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 24/246 (9%), Positives = 60/246 (24%), Gaps = 11/246 (4%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ--NTWYGKTT 148
             G   ++++   +  G    ++ G+R  D++            + L+         +  
Sbjct: 373 PDGRYLQVNDRYREITGYGTEELAGLRPADITHPGDRGDEEANFERLRAGHLAAHPWEKR 432

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +G+   V  DLA  P+         F   G++       +  A   +  +      
Sbjct: 433 FVRKDGSI--VWADLATSPVTDAAGNLLYF--IGVIQDISQRKELTAALCQAKETAERAS 488

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
             K    +    +               + K              L       + ++   
Sbjct: 489 RAKSDFMANMSHEIRTPMNGIMGMIHLARLKSPDPALAQYLDLADLSARHLLGIVNDVLD 548

Query: 269 LPEQEDF-----HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
           L + E             +   +     +Q  + E    L+    P +            
Sbjct: 549 LAKMEAGKVRLLREPFALRREIRAAIEPMQAAAGEKGLALALAVAPDVPDAVTGDAGRLR 608

Query: 324 ETVDKC 329
           + +   
Sbjct: 609 QVLANV 614


>gi|116749734|ref|YP_846421.1| multi-sensor hybrid histidine kinase [Syntrophobacter fumaroxidans
           MPOB]
 gi|116698798|gb|ABK17986.1| PAS/PAC sensor hybrid histidine kinase [Syntrophobacter
           fumaroxidans MPOB]
          Length = 870

 Score =  331 bits (849), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 104/413 (25%), Positives = 190/413 (46%), Gaps = 19/413 (4%)

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
           +       +     ++  +          D++       ++    +   I E  ++ I  
Sbjct: 209 QKGHLGETVHLPSGDEIGDVGRVFNEMSVDLERSQV--ALQQAEEKYRGIFENATEAIFQ 266

Query: 468 INR-EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
               +G  L+ N ++ ++ GY  E  L    T    Q      +H   E +  +  + + 
Sbjct: 267 RTPGKGHFLTVNPSMVRMLGYASEKELLTSVTDIGRQLYVRPKDHEEFERVLAEQGRIVG 326

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKES 582
             T    K+   + +    +++P +S     Y   + D++E ++++     AK  AE  S
Sbjct: 327 FETELYRKDRSTVWVSASARRVPGTSGGGYYYEGLLVDVTERREKEKA-ERAKDTAEAAS 385

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
             KS+FLA +SHEIRTP+ AI+GF+ ++       + +PR   Y   I  SG  ++ ++N
Sbjct: 386 KAKSEFLANMSHEIRTPMNAILGFTSLLS----PLITDPRQKNYLQSIQSSGKNLMSLIN 441

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADL 701
           D+LD+SKIE+GKM + +EPV L     +   +      +K +   TS A+++P  +L D 
Sbjct: 442 DILDLSKIEAGKMEIQYEPVVLRSVFVDLEKVFSWIIQDKGLQFITSIASDVPECVLLDE 501

Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-----VILRVRDTGVGMTNYELEKA 756
             ++QI  N++ NA+ FT SG  I +S    +        +++ V DTG+G+      + 
Sbjct: 502 VRLRQILFNLVGNALRFTESG-WIRLSAWREAGAGDGSFCLVMVVEDTGMGIQPEAHNRI 560

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            + F Q    +     GTGLGL ++K++V+   G   + S P  G++ EI  P
Sbjct: 561 FESFRQQSGQRARVYGGTGLGLTISKSLVEMLGGTISVQSRPGAGSVFEIRLP 613



 Score = 45.8 bits (107), Expect = 0.034,   Method: Composition-based stats.
 Identities = 16/132 (12%), Positives = 43/132 (32%), Gaps = 6/132 (4%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN--HIGDLL-KRQNTWY 144
                G+   ++  + + +G  + K +   + D+   L++ P +      +L ++     
Sbjct: 267 RTPGKGHFLTVNPSMVRMLGYASEKELLTSVTDIGRQLYVRPKDHEEFERVLAEQGRIVG 326

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI-VHVNRVDNDPRALGKRLDKK 203
            +T L+  + +   V +  +A  +   +     + G  + V   R            +  
Sbjct: 327 FETELYRKDRST--VWVSASARRVPGTSGGGYYYEGLLVDVTERREKEKAERAKDTAEAA 384

Query: 204 FSHLHEIKKGHS 215
                E     S
Sbjct: 385 SKAKSEFLANMS 396


>gi|220908653|ref|YP_002483964.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7425]
 gi|219865264|gb|ACL45603.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7425]
          Length = 645

 Score =  331 bits (849), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 87/410 (21%), Positives = 180/410 (43%), Gaps = 29/410 (7%)

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINK--RKMEIEVMQLCSILEATSDGIAIINREGI 473
           I      +  E +       E ++    +   ++  E  +L +++   +DG  +++ E  
Sbjct: 238 IDLPFGGELGELITSFNDMAERLERYEEQNIEELTAEKAKLETLVATIADGAILLDTEMR 297

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
           I+  N A  +LF +  ++++ +             +   L +  ++  R+  E      +
Sbjct: 298 IILINTAARRLFNWEGKEVVGENALHCFPSPVCVELTRPLFQT-AIGEREGGEFRVTLDS 356

Query: 534 KEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
              +++ + +      +       ++T+ DI+                 + +  KS F++
Sbjct: 357 SSPRIVRILLTSVLDQYREKPKGVAITVQDITR--------------EVELNDAKSQFIS 402

Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650
            VSHE+RTPL  I  F E + ++    L      E+ +  +R  + +  +VND+LD+S++
Sbjct: 403 NVSHELRTPLFNIKSFIETL-HEYGDDLSAAERREFLDTANRETDRLTRLVNDVLDLSRL 461

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710
           ESGK   HFE + L +A+ + +   QL A +K I +       +P +  +   + Q+  N
Sbjct: 462 ESGK-RYHFEAMDLVQAIEQTLRTHQLNARDKGIELIQEAEPALPNVWGNYDLLLQVFGN 520

Query: 711 ILSNAIHFTPSGGQIIISTTHTS------NEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764
           ++ NA+ FTP GG++ I     +       ++V + V DTG+G+   +       F ++ 
Sbjct: 521 LVGNALKFTPKGGRVAIRAYVLAQTPPLTGKQVRVEVSDTGIGIAPEDQSAIFDRFFRVE 580

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           N +    EGTGLGL + + ++  +    ++ S    GT      P+Y + 
Sbjct: 581 N-RVHTLEGTGLGLSIVQNIMQKHHTTIHLVSEVGVGTTFWFDLPVYQSE 629


>gi|189348642|ref|YP_001941838.1| signal transduction histidine kinase [Burkholderia multivorans ATCC
           17616]
 gi|189338780|dbj|BAG47848.1| signal transduction histidine kinase [Burkholderia multivorans ATCC
           17616]
          Length = 767

 Score =  331 bits (849), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 105/618 (16%), Positives = 212/618 (34%), Gaps = 30/618 (4%)

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
               +    ++V +     F   + P  +      +           +       L+ + 
Sbjct: 13  ATAVMFVAIATVLQALAIRFGGANMPLAVYYPLLAAIAWATSFLFGLIATLASSVLVWTL 72

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
             S P               +     +   +  +    +   +         G       
Sbjct: 73  FLSDPAAYAMSLSERLVRLGEFALIGVLACAVVAAVRHARVTNERARRREAAGRAQFEAL 132

Query: 326 VDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
           ++  P         G L Y N +   L   +  D    AG     +      D   ++  
Sbjct: 133 LNALPDGVIAADTNGRLTYVNAAAAALLGCRPDDA---AGRALRDVLQLTDRDGRRVQTS 189

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
            +  +       +   H ++      + +       A+          +  +    R   
Sbjct: 190 AVEHALGGTRT-TCERHWLRAAGGEPVPVAETAAPIADADGNVDGAVLLLRDASADRARA 248

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
              ++      ++++A+ D +  I+R+  I+S N A  ++FGY  E    + F   +   
Sbjct: 249 DAAQVR----RAVVDASPDALIGIDRDARIVSWNPAAQRIFGYDEEAAYGRRFDSLIAM- 303

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564
              +  H L +              L   ++       +  + +   +   + +  I+  
Sbjct: 304 -RWLKRHPLVQTFDHLREIVGPVDLLCVRRDGGRFRATVAARPVRGEARDGVALS-ITLR 361

Query: 565 K------------QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
           +            +       A + A   +  K + LA VSHE+RTPL  I G+ EV++N
Sbjct: 362 ETGAQRRQDRRTQRSLRSARDAGEQAATSNRLKDELLATVSHELRTPLNVIYGWIEVLRN 421

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
                L     ++  + IDRS   +  +V D+LD S + +GK+ L   PV +    ++ +
Sbjct: 422 SGDDAL----RVQAIDAIDRSARSLTRMVGDILDASSLSTGKLRLDTMPVDVVRLFADVV 477

Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
           +  Q  A+   I +          +  D   ++Q+  N++SNA+ FTP+GG + +S  H 
Sbjct: 478 AAFQTAASSAGIALEFESRVATCIVSGDAERLRQMLSNLVSNALKFTPAGGDVTVSVAH- 536

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
            +   +L V DTG G+    +      F +  +S      G GLGL + + +V  + G  
Sbjct: 537 DDTHAVLTVTDTGQGIAPEFVPHVFDMFRRADDSPASSRRGLGLGLSIVRHIVQLHGGTV 596

Query: 793 YIFST-PAKGTLIEIIFP 809
            + S    +GT   +  P
Sbjct: 597 VVDSAGRNRGTTFTVKLP 614



 Score = 68.5 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 33/260 (12%), Positives = 65/260 (25%), Gaps = 21/260 (8%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR--QNTWYGKT 147
           D +G L  ++      +G       G  L DV  +   D        ++     T     
Sbjct: 144 DTNGRLTYVNAAAAALLGCRPDDAAGRALRDVLQLTDRDGRRVQTSAVEHALGGTRTTCE 203

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
             W        VP+   A PI   +    G                 A  +R     S  
Sbjct: 204 RHWLRAAGGEPVPVAETAAPIADADGNVDGAVLLLRDASADRARADAAQVRRAVVDASPD 263

Query: 208 H----EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK------------- 250
                +      S       IF       + R  + + ++     H              
Sbjct: 264 ALIGIDRDARIVSWNPAAQRIFGYDEEAAYGRRFDSLIAMRWLKRHPLVQTFDHLREIVG 323

Query: 251 --DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
             D +          +  ++ P + +         T ++     + + +      S R+ 
Sbjct: 324 PVDLLCVRRDGGRFRATVAARPVRGEARDGVALSITLRETGAQRRQDRRTQRSLRSARDA 383

Query: 309 PSLSAYFDEGENLTPETVDK 328
              +A  +  ++    TV  
Sbjct: 384 GEQAATSNRLKDELLATVSH 403



 Score = 55.4 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/226 (11%), Positives = 62/226 (27%), Gaps = 6/226 (2%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID    +   +    +  G       G R   +  +  +  +  +      +    G   
Sbjct: 268 IDRDARIVSWNPAAQRIFGYDEEAAYGRRFDSLIAMRWLKRHPLVQTFDHLREIV-GPVD 326

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           L  +          +AA P+    R+     G  +    R     R   +R  +      
Sbjct: 327 LLCVRRDGGRFRATVAARPVRGEARD-----GVALSITLRETGAQRRQDRRTQRSLRSAR 381

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           +  +  ++  + K ++ +  S      +      +       DD L+ +    +     S
Sbjct: 382 DAGEQAATSNRLKDELLATVSHELRTPLNVIYGWIEVLRNSGDDALRVQAIDAIDRSARS 441

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
           L           +  T K    T+  +    F  +      + S+ 
Sbjct: 442 LTRMVGDILDASSLSTGKLRLDTMPVDVVRLFADVVAAFQTAASSA 487


>gi|295697074|ref|YP_003590312.1| multi-sensor signal transduction histidine kinase [Bacillus tusciae
           DSM 2912]
 gi|295412676|gb|ADG07168.1| multi-sensor signal transduction histidine kinase [Bacillus tusciae
           DSM 2912]
          Length = 622

 Score =  331 bits (849), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 99/550 (18%), Positives = 195/550 (35%), Gaps = 53/550 (9%)

Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET-------VDKCPIPFFVYSHGNLFYA 344
                  S          + +A    G  L           V + P+   V    +   A
Sbjct: 85  PDGRVIASSGETGGSADSNAAAQIWPGVELNRALDGETATDVQQNPVGRLVVRAASPVRA 144

Query: 345 NPSFL--LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT 402
               L  +  +      +   G     L    +S +  +    +   D        R   
Sbjct: 145 GDRILGVVWLETPLAQVVAPFGAWWAWLVGLGVSVSLGVAWSAVVARDIRTGLLQLRQAA 204

Query: 403 IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN--KRKMEIEVMQLCSILEA 460
             W +     + F   ++  Q  E + +     +     +     K+ +E  +L   ++ 
Sbjct: 205 AVWAQGRYHGLPFRRKDELGQVAEELAEMASALQRSTEDLAMSVEKLHLEKDRLEITMQH 264

Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520
              G+  ++  G +   N A+++L G   + ++ + F           M           
Sbjct: 265 LVSGVMALDGRGRVEWINPAMAELIG--EQRVIGRRFWGIQAFQPIYAMIDQAVRNGEGG 322

Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---------------------CYSLTMH 559
               +         E  ++ +  I  +   +                         + +H
Sbjct: 323 RYDGVFGPAR-REVEVHVVPIPRIPGQGQEAGSTKDVGRPEGRHFLRGSSLSGGAVVIIH 381

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           D++E ++ +                + +F+  VSHE++TP+TAI G +E +  +   P  
Sbjct: 382 DVTERRRLEQV--------------RKEFVTNVSHELKTPVTAICGLAETVVEEDLAP-- 425

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
                 +   I R    +  +V DLLD+S++ES    LH  PV L E   + +      A
Sbjct: 426 -EERRHFLELIHREARRLEQLVRDLLDLSRLESHLTTLHRRPVDLAEMARDVVQDYGYAA 484

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
            +    +      +  R   D   V+Q+  N++ NA+ +TP+GG++ +    T   EV +
Sbjct: 485 EQAGTDLYLDKEGDC-RAEVDPDRVRQVLSNLIDNALKYTPAGGRVDVRVLGTDPREVKV 543

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V DTGVG+   + ++  + F ++  ++     GTGLGL + K +V  + G+  + S   
Sbjct: 544 EVADTGVGIPPEDRDRVFERFYRVDKARARTTGGTGLGLAIVKHVVQLHGGRVGVESEVG 603

Query: 800 KGTLIEIIFP 809
           KG+   + FP
Sbjct: 604 KGSRFFVQFP 613


>gi|77920444|ref|YP_358259.1| putative two component signal transduction protein [Pelobacter
           carbinolicus DSM 2380]
 gi|77546527|gb|ABA90089.1| putative two component signal transduction protein [Pelobacter
           carbinolicus DSM 2380]
          Length = 917

 Score =  331 bits (849), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 98/765 (12%), Positives = 235/765 (30%), Gaps = 62/765 (8%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTWYGK 146
             D HG+ + +S      +G    +++G  L D+     ++       D L        +
Sbjct: 172 EADQHGFFRYLSPSHGMVLGFAPEELVGTWLYDLMHPDDLERMRITFRDTLPALKIVRAE 231

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                 +G   Y+ ++  A          +G                    +  +++   
Sbjct: 232 FRYRHADGH--YLWLETIAKCTTDELNRVNGA--VFASRDVTERVRAEKALRNNEEQLRR 287

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHL---RMKNKVSSLTEYYAHKDD-VLKTEKYPLL 262
           + +      S                 +     +  + +    + H DD     + + + 
Sbjct: 288 ITDHMPALVSAADLDGLFTYLSPSHRGILGFDYEALIGTCLWDWMHPDDMERMRKAFQVT 347

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQN---NSKESFEYLSHRNHPSLSAYFDEGE 319
             E+  + E+  +  ++ +    +            +   F                E  
Sbjct: 348 LPEKKRVHEEFRYRHVDGHYIWLETVAKCTMEGLRVTGSIFASRDITERRRAEIALREVN 407

Query: 320 NLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
                T+   P+  FV    G +   NP+   +  +   +       L+      +   N
Sbjct: 408 QTLQATIQASPLAIFVLNREGCIQLWNPAARQMFGWTEEEVKGKYYRLAPDYLDLEFRQN 467

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
                               +    +      L ++F      +Q    +   GI  +  
Sbjct: 468 --------LARMNRGEKFHGQETKRRCKDGTLLDISFSTAPLYDQKGRIIGTVGILEDIT 519

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILRKPF 497
           + +  +  +         I E   D   + + +   IL  N    +L+GY  + +     
Sbjct: 520 ERKRTEVALRESEELFRQIFEQNEDPAFLFDPDTLAILDANAVAVRLYGYSKKALRAGGL 579

Query: 498 TVFLEQNTPSVMNHYL---TEILSLDLRQTLEKITLGSTKEEKLL--SLRIIIKKLPFSS 552
            + ++    +     L      L+ D                K +  S R  + +     
Sbjct: 580 NLIMKPVVLTSFARKLVKEQAGLADDAPWRHVSPLNTIASSGKEVMASFRGRLLRSRGQV 639

Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESS--HKSDFLARVSHEIRTPLTAIIGFSEVI 610
            +  T  DI+E  + + + S  +    + +         + ++HEI  P   ++  ++ +
Sbjct: 640 YFYGTFRDITEKLRIRKERSEMQAKLIQANKMTAIGTLASGIAHEINNPNNYLLANAQFL 699

Query: 611 ----------KNQRFGPLGN------------PRYIEYANYIDRSGNLVLDIVNDLLDIS 648
                       +      +                +    +      + +IV  L D S
Sbjct: 700 EEAWPDIQHTLQEHADSDPDLTIGGLPVQEALKDIPQLLQSLIEGSRRIKNIVTSLKDFS 759

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIA 708
           + +         PV ++  ++ A+ ++     +   L   + +  +P I+   + ++Q+ 
Sbjct: 760 RQDD---ESTRRPVDINRVINAALVILANKIKKSTDLFNCTLSAGLPPIMGHSQKIEQVI 816

Query: 709 LNILSNAIHFTP---SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           +N+L NA+   P   +G  +  S   +    V++++RD G G+      + + PF     
Sbjct: 817 INLLINALQALPHRQAGVSLTTSLQESPR-SVVIKIRDQGTGIPEEIRGRILDPFFTTK- 874

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
               +  GTGLGL +  A+++ + G     S    GT + ++ P+
Sbjct: 875 ---HKTGGTGLGLSICYAIINDHKGSIDFASEAGAGTTVTVVLPV 916



 Score =  164 bits (415), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 61/544 (11%), Positives = 145/544 (26%), Gaps = 39/544 (7%)

Query: 66  NYLDSENTFVFDPIP-------RTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRL 118
             + +      DP               +  +  G  +  +    + +G    +++    
Sbjct: 18  GNVSAGEALPTDPGLFDNMIRLLPDPIFFK-NLDGSYQRCNAAFEQLLGKERAEIVDKTD 76

Query: 119 CDVSDI--LHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFS 176
            D+      H++ +N I  L     +   +T++    G    V I +A + I       +
Sbjct: 77  YDLFLPSIAHVNRHNDICLLNAGLPSHRYETSIVSRNGRRREVIIQIALITI---EGGPT 133

Query: 177 GFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKE--KYDIFSQQSPPPHL 234
           G   FGI+             +        + +      S   +   +   S        
Sbjct: 134 GI--FGIIKDITERRRAETALRERKDLLHRITDNMLDLVSEADQHGFFRYLSPSHGMVLG 191

Query: 235 RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS--LPEQEDFHTINLNQYTKKQYFGTL 292
               ++     Y     D L+  +     +  +   +  +  +   + +    +      
Sbjct: 192 FAPEELVGTWLYDLMHPDDLERMRITFRDTLPALKIVRAEFRYRHADGHYLWLETIAKCT 251

Query: 293 QNNSKESFEYLSHRNHPSLSAYFDEGEN----LTPETVDKCPIPF-FVYSHGNLFYANPS 347
            +        +      +     ++             D  P         G   Y +PS
Sbjct: 252 TDELNRVNGAVFASRDVTERVRAEKALRNNEEQLRRITDHMPALVSAADLDGLFTYLSPS 311

Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
              +  +     I              +        V L    R            +   
Sbjct: 312 HRGILGFDYEALIGTCLWDWM--HPDDMERMRKAFQVTLPEKKRVH-----EEFRYRHVD 364

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
            + + +  +                   +  + R  +  +      L + ++A+   I +
Sbjct: 365 GHYIWLETVAKCTMEGL-RVTGSIFASRDITERRRAEIALREVNQTLQATIQASPLAIFV 423

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
           +NREG I   N A  ++FG+  E++  K +               L  +   +      +
Sbjct: 424 LNREGCIQLWNPAARQMFGWTEEEVKGK-YYRLAPDYLDLEFRQNLARMNRGEK--FHGQ 480

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAEKESS 583
            T    K+  LL +      L             + DI+E K+ +  L  ++++  +   
Sbjct: 481 ETKRRCKDGTLLDISFSTAPLYDQKGRIIGTVGILEDITERKRTEVALRESEELFRQIFE 540

Query: 584 HKSD 587
              D
Sbjct: 541 QNED 544



 Score =  107 bits (267), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 40/337 (11%), Positives = 90/337 (26%), Gaps = 32/337 (9%)

Query: 311 LSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
                     L    +   P P F     G+    N +F  L   +  + ++       L
Sbjct: 22  AGEALPTDPGLFDNMIRLLPDPIFFKNLDGSYQRCNAAFEQLLGKERAEIVDKTDY--DL 79

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
                   N      +L     +          +  N      +  I        P    
Sbjct: 80  FLPSIAHVNRHNDICLLNAGLPSH---RYETSIVSRNGRRREVIIQIALITIEGGP--TG 134

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
             GI  +  + R  +  +      L  I +   D ++  ++ G     + +   + G+  
Sbjct: 135 IFGIIKDITERRRAETALRERKDLLHRITDNMLDLVSEADQHGFFRYLSPSHGMVLGFAP 194

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR----III 545
           E+++       +  +    M     + L     + +         +   L L        
Sbjct: 195 EELVGTWLYDLMHPDDLERMRITFRDTL--PALKIVRAEFRYRHADGHYLWLETIAKCTT 252

Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV-----------SH 594
            +L   +       D++E  + +  L + ++   + + H    ++             SH
Sbjct: 253 DELNRVNGAVFASRDVTERVRAEKALRNNEEQLRRITDHMPALVSAADLDGLFTYLSPSH 312

Query: 595 EIRTPLTAIIGF-SEVIKNQRFGPLGNPRYIEYANYI 630
                   I+GF  E +         +P  +E     
Sbjct: 313 ------RGILGFDYEALIGTCLWDWMHPDDMERMRKA 343



 Score = 67.7 bits (164), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 25/284 (8%), Positives = 71/284 (25%), Gaps = 23/284 (8%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + ++  G ++  +    +  G    ++ G       D L ++   ++  + + +     
Sbjct: 421 IFVLNREGCIQLWNPAARQMFGWTEEEVKGKYYRLAPDYLDLEFRQNLARMNRGEKFHGQ 480

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +T     +GT   + I  +  P+Y +     G    GI+             +  ++ F 
Sbjct: 481 ETKRRCKDGTL--LDISFSTAPLYDQKGRIIGT--VGILEDITERKRTEVALRESEELFR 536

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHL---------RMKNKVSSLTEYYAHKDDVLKT 256
            + E  +  + +           +              R       +             
Sbjct: 537 QIFEQNEDPAFLFDPDTLAILDANAVAVRLYGYSKKALRAGGLNLIMKPVVLTSFARKLV 596

Query: 257 EKYPLLTSEESSL---PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
           ++   L  +       P      +      + +      +        +        +  
Sbjct: 597 KEQAGLADDAPWRHVSPLNTIASSGKEVMASFRGRLLRSRGQVYFYGTFRDITEKLRIRK 656

Query: 314 YFDEGENLTPE-----TVDKCPIPFF--VYSHGNLFYANPSFLL 350
              E +    +      +          + +  N   AN  FL 
Sbjct: 657 ERSEMQAKLIQANKMTAIGTLASGIAHEINNPNNYLLANAQFLE 700


>gi|240137274|ref|YP_002961743.1| Two-component sensor histidine kinase with a PAS domain
           [Methylobacterium extorquens AM1]
 gi|240007240|gb|ACS38466.1| Two-component sensor histidine kinase with a PAS domain
           [Methylobacterium extorquens AM1]
          Length = 646

 Score =  331 bits (849), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 115/581 (19%), Positives = 210/581 (36%), Gaps = 18/581 (3%)

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
           V       A   D             E S+  + +         ++      +       
Sbjct: 3   VLRKDGTLASLFDSRLAGLVHASALAEPSVRFRHER-----FLISRLATGAVMMAGLPPY 57

Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDD 359
             +    +     A       L    V       +V    +        + L        
Sbjct: 58  LVWRGVPSGLEAIAIASLFLPLLAAVVLSRTGSLWVAHALSSLGLTGIVVCLAALTGGAS 117

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
              A  L  +     +S +          +     A +  L         +L        
Sbjct: 118 SAAAIWLVAVPLEAMVSGSRRATIAASVIA--VVGAFAIALSGYLPVGALALDWPNAIVM 175

Query: 420 KANQFPENMPQNGIEPEDVDTRIN-KRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
                           E +      + +M+    +   +L A  D +   +  G +L  +
Sbjct: 176 PVFAVTAIGHIAAQAMEHMRREGEWRARMQDNEARDRLLLSAIDDLVTWHDANGRVLEAS 235

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE-- 536
            + ++  G     +        +       +   ++++ +     T+             
Sbjct: 236 GSAARFVGAEASRLRGHGLLDRVHIGDRPALLQAISDVAAHGAPATVPFRLHLDAARGDG 295

Query: 537 -KLLSLRIIIKKLP------FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
            + +   +   ++         S       D+SE ++   +L  A+  AE+    K+ FL
Sbjct: 296 SRTIFAEMRAHRIEAGLAGANGSTVVAVTRDVSEHRRHAQELDRARAEAERADEVKTHFL 355

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
           A VSHE+RTPL AIIGFS+V+  +    L   R  EYA  I +SG  +LD+VN LLDIS+
Sbjct: 356 ATVSHELRTPLNAIIGFSDVLGGEGAVSLSPERSREYAGIIAQSGRHLLDVVNTLLDISR 415

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709
           I  G  +   EPV ++  +     L++L A+   I + ++       ++AD R+ +Q+ +
Sbjct: 416 IRGGHFDFQPEPVDVEALIRGCCDLMRLKADASGITLTSAPVPAGCALVADARACRQMLI 475

Query: 710 NILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
           N++SNA+ FTP GG++ +         + + V D G+G+T  +L +   PF Q+      
Sbjct: 476 NLISNAVKFTPRGGRVEVMVR-RGGAYLDIVVSDDGIGITEADLPRLGDPFFQVGGGYGR 534

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             EGTGLGL + + +   + G   + S P KGT + +  PL
Sbjct: 535 SHEGTGLGLSVVRGLAGLHGGAVSVESAPGKGTAVTVTLPL 575



 Score = 40.4 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 28/273 (10%), Positives = 66/273 (24%), Gaps = 16/273 (5%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           DA+G + E S    + +G  A ++ G  L D   I            +            
Sbjct: 226 DANGRVLEASGSAARFVGAEASRLRGHGLLDRVHIGDRPALLQAISDVAAHGAPATVPFR 285

Query: 150 WPIEGTNLYVPIDLAA--LPIYSRNREFSGFRG---FGIVHVNRVDNDPRALGKRLDKKF 204
             ++         + A            +G  G     +               R   + 
Sbjct: 286 LHLDAARGDGSRTIFAEMRAHRIEAG-LAGANGSTVVAVTRDVSEHRRHAQELDRARAEA 344

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS-SLTEYYAHKDDVLKTEKYPLLT 263
               E+K    +    +              +  + + SL+   + +   +  +    L 
Sbjct: 345 ERADEVKTHFLATVSHELRTPLNAIIGFSDVLGGEGAVSLSPERSREYAGIIAQSGRHLL 404

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTL--------QNNSKESFEYLSHRNHPSLSAYF 315
              ++L +       + +   +      L        +  +  S   L+    P+  A  
Sbjct: 405 DVVNTLLDISRIRGGHFDFQPEPVDVEALIRGCCDLMRLKADASGITLTSAPVPAGCALV 464

Query: 316 DEGENLTPETVDKCPIPF-FVYSHGNLFYANPS 347
            +        ++       F    G +      
Sbjct: 465 ADARACRQMLINLISNAVKFTPRGGRVEVMVRR 497


>gi|294498535|ref|YP_003562235.1| two-component sensor histidine kinase/response regulator [Bacillus
           megaterium QM B1551]
 gi|294348472|gb|ADE68801.1| two-component sensor histidine kinase/response regulator [Bacillus
           megaterium QM B1551]
          Length = 995

 Score =  331 bits (849), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 111/440 (25%), Positives = 188/440 (42%), Gaps = 31/440 (7%)

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP------EDVDTR 441
             +   I        I         +   P    ++  E +             +D+  +
Sbjct: 74  AWEGQYIEYEGEFRGI------YYVIYLRPLFHKDKVAEVVGTCVDITNKKIMEDDILQK 127

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE--DILRKPFTV 499
             +RK+        S+++    GIA+ +    I   NR   +LF    E    +    + 
Sbjct: 128 EQERKLMNSYAFQRSLIDRLHSGIAVTDCNKKIRLLNRKFYELFQLKGEVDCHIGMQASD 187

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH 559
                   +  +               KI  G T       L     +      Y     
Sbjct: 188 LHYLFDKEINKNKFENTEKRTRTTKEIKIDTGRTLRYNCFPLN----EENDFVGYLWEFE 243

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           DI+E K+ +  +  AK+ AEK +  KS FL+++SHE+RTPL  I+GF+++++        
Sbjct: 244 DITEQKKMERVIIQAKEEAEKVNMAKSSFLSKMSHELRTPLNGILGFAQLLE---MDESL 300

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
           N +  ++A  I   G+ +L ++ND+LD+S+IE+G + +  E V L   + E I++VQ  A
Sbjct: 301 NEQQRDFAQEILSGGSHLLSLINDILDVSRIETGNLKISVEEVHLLTVIKECINIVQPLA 360

Query: 680 NEKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738
            +K I I +         +LAD   +KQI LN+L NAI +    G++I+      N++  
Sbjct: 361 KKKNISIYSQLDQWEDMIVLADPIRLKQILLNLLDNAIKYNQENGKVIVFCRLQENKQ-Y 419

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           + + DTGVG +  E  K   PF +I ++   + EGTG+GL L K +V    G+  + S  
Sbjct: 420 IHIVDTGVGFSVEEYTKVFVPFYRIEST---KEEGTGIGLSLVKQLVHLMGGEINVTSNK 476

Query: 799 AKGTLIEIIFPLYDTSHPHD 818
             G+      PL     P+D
Sbjct: 477 GTGSEFCFSLPL-----PND 491


>gi|229016834|ref|ZP_04173762.1| hypothetical protein bcere0030_14020 [Bacillus cereus AH1273]
 gi|229023039|ref|ZP_04179554.1| hypothetical protein bcere0029_13840 [Bacillus cereus AH1272]
 gi|228738262|gb|EEL88743.1| hypothetical protein bcere0029_13840 [Bacillus cereus AH1272]
 gi|228744395|gb|EEL94469.1| hypothetical protein bcere0030_14020 [Bacillus cereus AH1273]
          Length = 591

 Score =  331 bits (849), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 83/365 (22%), Positives = 159/365 (43%), Gaps = 27/365 (7%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            ++ E  QL SIL + +DG+  +N+EG ++  N           E+       + L +  
Sbjct: 249 ALQQEKEQLASILSSMADGVITLNQEGAVVVINPPAEHFLQVWQEEK-----EIELSKKL 303

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
           PS +      ++  + +Q +E        +   + L   +            + D++E +
Sbjct: 304 PSELVELFHLVVESEQQQVVEINLQ----KGNYVVLMTPLYNQTKIRGAVAVLRDMTEER 359

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + +                + DF+A VSHE+RTP+  + G+SE I +            E
Sbjct: 360 RLE--------------KMRQDFIANVSHELRTPMVMLQGYSEAILDDIVQT--KEEINE 403

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           +   I      +  +VN+LLD++++ESG + LH   V +   V +     Q  A +K + 
Sbjct: 404 FVQIIYDESVRLGKLVNELLDLARMESGHVELHIGEVDIHPFVEKIGRKFQGIAKDKEVQ 463

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +   F + I +   D   ++Q+  N++ NAI  T +GG + +     ++  +   V+D+G
Sbjct: 464 LTVDFQSPIEQYPFDADRMEQVLTNLIDNAIRHTNAGGHVTLVINTENSG-LTFEVQDSG 522

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGE-GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
            G+   ++      F +   ++    + GTGLGL +AK +V  + GK  + S   +GT  
Sbjct: 523 AGIPEEDIPFLFDRFYKADKARTRGKKVGTGLGLAIAKNIVQGHDGKISVSSVVGEGTTF 582

Query: 805 EIIFP 809
            +  P
Sbjct: 583 SVYLP 587


>gi|86609856|ref|YP_478618.1| sensory box histidine kinase [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86558398|gb|ABD03355.1| sensory box histidine kinase [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 700

 Score =  331 bits (849), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 87/382 (22%), Positives = 177/382 (46%), Gaps = 26/382 (6%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            ++     +L +++ +  D   +++ E  +L  N A S++FG+  + +L KP    L ++
Sbjct: 309 EELAAAKAKLETLVFSIVDAAILLDAELRVLLLNPAASRMFGWEGDPVLGKPLPELLPED 368

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDI 561
               +   L +I     ++  E     +   ++++ + +     P         +T+ DI
Sbjct: 369 LQQQLARPLMQIAR-GDQEAEEVRVNLTGPTKRVIRILLSPVSDPRRQNLKGIVMTVQDI 427

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           +                 + +  K+ F++ +SHE+RTPL +I  F E +  +    + + 
Sbjct: 428 TR--------------EVELNEAKAQFISNISHELRTPLFSIKSFIETLY-EYGEQMSSA 472

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
             ++Y    +R  + +  +VND+LD+S++ESGK   HFE V +   + + +   QL A +
Sbjct: 473 ERLDYLEIANRETDRLTRLVNDVLDLSRLESGK-QYHFEGVDIAAVIEQTLRTHQLQARD 531

Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----- 736
           K I +R     ++P +  +   + Q+  N+L NA+ FTPSGG + +        +     
Sbjct: 532 KGIQLRKFVDPDLPLVWGNYDLLLQVMTNLLGNALKFTPSGGLVTVHAHLVVQADGSPQA 591

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           V + V DTG+G+   + E+    F ++ N +    EGTGLGL + + +++ +  +  + S
Sbjct: 592 VRVAVADTGIGIAPEDQERIFDRFFRVEN-RVHTLEGTGLGLAIVRNILEKHRTRICLES 650

Query: 797 TPAKGTLIEIIFPLYDTSHPHD 818
              +G+       LY    P +
Sbjct: 651 KLEQGSTFWFDLHLYTEEGPLE 672



 Score = 48.5 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/253 (10%), Positives = 64/253 (25%), Gaps = 15/253 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +DA   +  ++    +  G     ++G  L ++               + R +    +  
Sbjct: 332 LDAELRVLLLNPAASRMFGWEGDPVLGKPLPELLPEDLQQQLARPLMQIARGDQEAEEVR 391

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           +     T   + I L+  P+    R+       GIV   +       L +   +  S++ 
Sbjct: 392 VNLTGPTKRVIRILLS--PVSDPRRQ----NLKGIVMTVQDITREVELNEAKAQFISNIS 445

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE------KYPLL 262
              +      K   +   +           +     E    + D L            L 
Sbjct: 446 HELRTPLFSIKSFIETLYE---YGEQMSSAERLDYLEIANRETDRLTRLVNDVLDLSRLE 502

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
           + ++      +    I     T +          ++  +        +         NL 
Sbjct: 503 SGKQYHFEGVDIAAVIEQTLRTHQLQARDKGIQLRKFVDPDLPLVWGNYDLLLQVMTNLL 562

Query: 323 PETVDKCPIPFFV 335
              +   P    V
Sbjct: 563 GNALKFTPSGGLV 575


>gi|301383865|ref|ZP_07232283.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. tomato Max13]
 gi|302060595|ref|ZP_07252136.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. tomato K40]
 gi|302134767|ref|ZP_07260757.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. tomato NCPPB 1108]
          Length = 775

 Score =  331 bits (848), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 130/607 (21%), Positives = 236/607 (38%), Gaps = 28/607 (4%)

Query: 222 YDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTI--N 279
            +  + Q+     R+      +   +    +   + +  LLT +E  LP   +   +   
Sbjct: 39  AERQTAQAEEDVRRVLLVQGDIQTLHTQIAEGAASVRGYLLTHQEDFLPGYINAQPLINA 98

Query: 280 LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP--FFVYS 337
                             +S E L       L      G                     
Sbjct: 99  ALVRLDANIRDQQMREHLKSIEPLIRTKVDGLERLRSMGREDHENVAAILVENKYVLDQL 158

Query: 338 HGNLFYANPSFLLLTKYKSVDDIEIAGGL--STLLDAPKLSDNNAIKPVMLYRSDRTCIA 395
              +         L   ++         L  STLL A        +  +ML +       
Sbjct: 159 RERIGVMREREDALLAERTEAAAATRERLLWSTLLAAACGIFGAILAVLMLSKG------ 212

Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
             AR+H +Q N +       +  +   +         +          +R +     +L 
Sbjct: 213 IVARVHQVQRNAQRLALGHPLLPQPPEKDEIGQLGTRLVEAGQLLAERERALRDNEERLR 272

Query: 456 SILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
            I+E   D GI  ++R G + + N    ++ GY  ++I+ + F+VF              
Sbjct: 273 LIIEGVKDYGIFALDRNGYVTTWNAGAERIKGYTEQEIIGQHFSVFYLPQECPQHPDM-- 330

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNK 570
            +    +     + +    K+       ++I     S      +S    DIS+ +  +  
Sbjct: 331 ALHEATVNGRYTEESWRRRKDGSRFWASVVITAQYDSNDELRGFSKITRDISDRRVAEIA 390

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           L  A++ AE+ S  KS+FL+R+SHE+RTPL +I+GF++++                  +I
Sbjct: 391 LGTAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLL-----DMDSPASQRPQVGHI 445

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI-RTS 689
            R+G  +L ++N++LDI++IE+G ++L  EPVSL   + E + LV   A +  I +    
Sbjct: 446 LRAGQHLLKLINEVLDIARIEAGHVSLSLEPVSLSSVLKETLVLVSPMAADGNIELKELP 505

Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749
           +  +   ++AD + + Q+ LN+LSNAI +    GQ+ I    ++   V + V DTG G+ 
Sbjct: 506 YLPDELGVIADRQRLVQVLLNLLSNAIKYNRPDGQVRIEVDRSAE-HVTVSVVDTGYGIA 564

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
              L +  KPF ++        EGTGLGL L+K+M++   G   + +T  +G    +  P
Sbjct: 565 PERLGQLFKPFERLDA--NPSVEGTGLGLALSKSMLEMMKGTLSVQTTQNEGCRFTLALP 622

Query: 810 LYDTSHP 816
                 P
Sbjct: 623 FVAVHAP 629



 Score = 51.2 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/265 (9%), Positives = 68/265 (25%), Gaps = 20/265 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH--IDPNNHIGDLLKRQNTW 143
            + +D +GY+   +    +  G    ++IG               P+  + +       +
Sbjct: 283 IFALDRNGYVTTWNAGAERIKGYTEQEIIGQHFSVFYLPQECPQHPDMALHEATVNGR-Y 341

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGF---------RGFGIVHVNRVDNDPR 194
             ++     +G+  +  + + A   Y  N E  GF         R    + +     +  
Sbjct: 342 TEESWRRRKDGSRFWASVVITAQ--YDSNDELRGFSKITRDISDRRVAEIALGTAREEAE 399

Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254
              +   +  S +    +   +       +    SP         +    ++      + 
Sbjct: 400 RASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSPASQRPQVGHILRAGQHLLKL--IN 457

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
           +      + +   SL  +    +       K+         +  + E       P     
Sbjct: 458 EVLDIARIEAGHVSLSLEPVSLSS----VLKETLVLVSPMAADGNIELKELPYLPDELGV 513

Query: 315 FDEGENLTPETVDKCPIPFFVYSHG 339
             + + L    ++            
Sbjct: 514 IADRQRLVQVLLNLLSNAIKYNRPD 538


>gi|56963601|ref|YP_175332.1| two-component sensor histidine kinase [Bacillus clausii KSM-K16]
 gi|56909844|dbj|BAD64371.1| two-component sensor histidine kinase [Bacillus clausii KSM-K16]
          Length = 598

 Score =  331 bits (848), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 87/403 (21%), Positives = 166/403 (41%), Gaps = 24/403 (5%)

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
           E +            Q               +   N  ++  E  QL  IL + +DG+  
Sbjct: 211 EVAQGQFHTKVPILTQDEIGQLAIAFNRMRRELNRNISELNQEKEQLSHILASMADGVIT 270

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
           ++R+G IL TN    ++      +  +KP T    +  P  +     +++S +  +  E 
Sbjct: 271 LDRQGRILLTNPQAEEVLALLFYEEGQKPITGE-RKTLPVSLTPLFEQVVSAEKEELQEL 329

Query: 528 ITLGSTKEEKLLSLRIII-KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
                  + + +++ +               + D++E ++                  + 
Sbjct: 330 SV-----QGRSMAVLMAPLYAEEHVRGAVAVVRDVTEERRH--------------DKLRK 370

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
           DF+A VSHE+RTP++ + G+SE + +       +    E A  I      +  +VN+LLD
Sbjct: 371 DFIANVSHELRTPISMLQGYSEAMVDGV--TSSDEERKEVAQIIYDESLRMGRLVNELLD 428

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706
           ++++E+G ++L+ E V LD  +         +A E  + +  +        + D   ++Q
Sbjct: 429 LARMEAGYIDLNLEEVDLDSYLERITRKFASFAREYDVTVELAKPGRGQIAVFDPDRIEQ 488

Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
           +  N++ NAI  T  GG I +        +    V DTG G+   +L    + F +   +
Sbjct: 489 VLTNLIHNAIRHTNPGGLITVVHEQEEERD-TFAVVDTGRGIPEEDLPYVFERFYKADKA 547

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +  +  GTGLGL +AK ++DA+ GK  + S   +GT      P
Sbjct: 548 RTRQHGGTGLGLAIAKHIIDAHQGKITVHSRLGEGTTFHFTLP 590


>gi|110801347|ref|YP_696443.1| sensory box histidine kinase [Clostridium perfringens ATCC 13124]
 gi|168207284|ref|ZP_02633289.1| sensory box histidine kinase [Clostridium perfringens E str.
           JGS1987]
 gi|168210610|ref|ZP_02636235.1| sensory box histidine kinase [Clostridium perfringens B str. ATCC
           3626]
 gi|182625884|ref|ZP_02953650.1| sensory box histidine kinase [Clostridium perfringens D str.
           JGS1721]
 gi|110675994|gb|ABG84981.1| sensory box histidine kinase [Clostridium perfringens ATCC 13124]
 gi|170661350|gb|EDT14033.1| sensory box histidine kinase [Clostridium perfringens E str.
           JGS1987]
 gi|170711264|gb|EDT23446.1| sensory box histidine kinase [Clostridium perfringens B str. ATCC
           3626]
 gi|177908918|gb|EDT71410.1| sensory box histidine kinase [Clostridium perfringens D str.
           JGS1721]
          Length = 571

 Score =  331 bits (848), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 83/375 (22%), Positives = 171/375 (45%), Gaps = 39/375 (10%)

Query: 444 KRKMEIEVMQ-------LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             ++EI + +       L +IL++   G+   +R+  +L  N    K+FG   E I  K 
Sbjct: 226 AEQLEITMERFKDKQNGLEAILKSMGSGVIAFDRDMNVLMINPYAKKIFGISGEIIGNKL 285

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR-IIIKKLPFSSCYS 555
                ++            +         E     +  + K+L +R   I   P      
Sbjct: 286 LDYITDKEVLKAFFDEKDRV---------EIEVNYND-DPKILKIRKASIINEPEIIGTV 335

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
           + + DI++ K+ +              + +S F+A +SHE++TPLT+I GF+E ++    
Sbjct: 336 VVIQDITDIKKLE--------------NMRSQFVANISHELKTPLTSIKGFAETLR---- 377

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
               +    ++ + ID   + +  ++ D+L + +IE  +  +  E  ++DE + +   L+
Sbjct: 378 YVDDDETRNKFLSIIDEESDRLARLLEDILCLYEIEQKRSTV-LEEFNVDEEIEKVYMLL 436

Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
              A +K + I     +N   ++ D    KQ+ LN++SN++ +T  GG++ +  ++  + 
Sbjct: 437 NDQAKKKGVEIFLDTNSNC-VLMGDKDKFKQMLLNLVSNSVKYTEKGGKVRVE-SYNRDM 494

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            ++L + D G+G++  +L +  + F ++  ++     GTGLGL + K +V    G+  + 
Sbjct: 495 NLVLVIEDNGIGISAEDLPRIFERFYRVDKARSRESGGTGLGLAIVKHIVRLFDGEINVT 554

Query: 796 STPAKGTLIEIIFPL 810
           S    GT I I  P+
Sbjct: 555 SELGVGTKIVITIPI 569


>gi|124268874|ref|YP_001022878.1| PAS/PAC sensor hybrid histidine kinase [Methylibium petroleiphilum
           PM1]
 gi|124261649|gb|ABM96643.1| PAS/PAC sensor hybrid histidine kinase [Methylibium petroleiphilum
           PM1]
          Length = 833

 Score =  331 bits (848), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 107/587 (18%), Positives = 226/587 (38%), Gaps = 29/587 (4%)

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
           +++       +   L      L T     L    +   +      +  Y   L +     
Sbjct: 102 IANDAPNDPRRGGGLPQGHQALNTFLGVPLHYGSELVGMIGLANRRPGYDHALLDALDPL 161

Query: 300 FEYLSH--------RNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLL 350
           F+ ++         R   +  +     E     + +          + G L   N  F  
Sbjct: 162 FQSMAGIIASVQLDRQRRAAESALRASEERWRHSFEMAGAGIAQTGADGRLLEVNARFCE 221

Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
           +      + +  +             D+ A    +L R     +    R          +
Sbjct: 222 IVGRSRDELLAGS------FRELTHPDDLADDEDLLRRLVAGQVLRENREKRYLRPDGTT 275

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI--- 467
           L +        +          +  +    R  +  ++        + +    G+ +   
Sbjct: 276 LWVQLTVTAVFDALGRFQHTVTVALDIDQRRRAEAALQEREALFTKLADRVP-GVLLQFN 334

Query: 468 INREG--IILSTNRAVSKLFGYPVE---DILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522
           ++ +G   +   +R + +LF    +       +     + +     +   L         
Sbjct: 335 VDAQGVARVPYASRGLRELFELDPDGAVRDDARLMIERVAKGQRKRVWETLERAGQRLEP 394

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-YSLTMHDISEWKQEKNKLSHAKKIAEKE 581
             +E      ++  + +  +   ++LP  S  +   + DI++ KQ  +      + A + 
Sbjct: 395 WAIEFEVDLPSRGRRAVEAQGSPERLPDGSTTWHGYIRDITDRKQA-DAALMNAQAAARA 453

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
           +  K++FL+R+SHE+RTPL A++GF++++      PL +        +I+R+G  +L ++
Sbjct: 454 NEAKTEFLSRMSHELRTPLNAVLGFTQLLLGDPSAPLQDG-QRARLGHIERAGQHLLAMI 512

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701
            D+LD+S+IE+G + L  +PV L   VSE+ +LV   A+   + +      ++  + AD 
Sbjct: 513 GDVLDLSRIETGSLPLQPQPVGLSALVSESFALVLPTAHASGVTLIRRGPGDL-HVTADP 571

Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761
             ++Q+ +N+LSNA+ +  SGGQ+++ T       V + V DTG+GMT  +     +PF 
Sbjct: 572 MRLRQVLVNLLSNAVKYNRSGGQVVVETEGIDEHTVRIAVTDTGMGMTPAQQLHLFEPFN 631

Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           ++   +    EGTGLGL +   +V+   G+  + S P  G+   +  
Sbjct: 632 RLGAERS-SIEGTGLGLAITLRLVELMDGRISVHSQPGSGSTFHVEL 677



 Score = 77.4 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 23/221 (10%), Positives = 58/221 (26%), Gaps = 8/221 (3%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY--G 145
              A G L E++    + +G    +++     +++    +  +  +   L          
Sbjct: 205 QTGADGRLLEVNARFCEIVGRSRDELLAGSFRELTHPDDLADDEDLLRRLVAGQVLRENR 264

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +      +GT   + + L    ++     F       +           A  +  +  F+
Sbjct: 265 EKRYLRPDGTT--LWVQLTVTAVFDALGRFQHT--VTVALDIDQRRRAEAALQEREALFT 320

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
            L +   G   + +   D       P   R   ++  L    A +DD     +       
Sbjct: 321 KLADRVPGV--LLQFNVDAQGVARVPYASRGLRELFELDPDGAVRDDARLMIERVAKGQR 378

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
           +      E           + +     +       +    R
Sbjct: 379 KRVWETLERAGQRLEPWAIEFEVDLPSRGRRAVEAQGSPER 419


>gi|85712454|ref|ZP_01043503.1| Hybrid sensor histidine kinase (HisK, 2 CheY, Hpt domains)
           [Idiomarina baltica OS145]
 gi|85693732|gb|EAQ31681.1| Hybrid sensor histidine kinase (HisK, 2 CheY, Hpt domains)
           [Idiomarina baltica OS145]
          Length = 868

 Score =  331 bits (848), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 88/410 (21%), Positives = 159/410 (38%), Gaps = 14/410 (3%)

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG 472
           +              +     +                   L  +       +   N + 
Sbjct: 34  VLLTSVVVGLIAGTVIYTWTRQTSLTSPLRQPFLTASSQQLLQQVFNDLPTRVYWRNSDL 93

Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
             L  N A  +      E +  K            ++       L   L     +I L  
Sbjct: 94  EFLGGNDAFLRDIQCSTEALEGKRDDQLAWLAKNPILQERDRLTLEHGLASCNAEIELNL 153

Query: 533 TKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
               + +    +       +      + +DIS  K    ++  AK+ AE+ +  K +FLA
Sbjct: 154 ANNTRYIEHSSVPLYDDQKNVIGIIGSYYDISSIKSVAEQMEQAKESAEQANVAKGEFLA 213

Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650
            +SHEIRTP+ AI+G + +    +     + +   Y   ID S   +L ++ND+LD SKI
Sbjct: 214 NMSHEIRTPINAIVGMANLCLKTQL----SEKQKRYIKVIDSSSQALLGVINDILDFSKI 269

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIAL 709
           ++GK+++   P  L + ++    +    A +K +    +   NIP R+  D   + Q+ +
Sbjct: 270 DAGKLSIERIPFDLQDVLTSLADMFAYKAYDKDLEFIINLPANIPTRLFGDPLRLNQVLV 329

Query: 710 NILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           N++SNAI FT  G +I ++ T          + + V DTG+GM   +     K F Q  +
Sbjct: 330 NLVSNAIKFTEDG-EINVAVTLLDKNTDKVWLRISVTDTGIGMDEEQRANLFKAFTQADS 388

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI--IFPLYDT 813
           S   +  GTGLGL +++ ++    G   + S   +G+   I    P+   
Sbjct: 389 STTRKYGGTGLGLAISRRLIQLMGGDIGVTSGVGQGSTFYIELTLPMQPE 438


>gi|83312522|ref|YP_422786.1| Signal transduction histidine kinase involved in nitrogen fixation
           and metabolism regulation [Magnetospirillum magneticum
           AMB-1]
 gi|82947363|dbj|BAE52227.1| Signal transduction histidine kinase involved in nitrogen fixation
           and metabolism regulation [Magnetospirillum magneticum
           AMB-1]
          Length = 840

 Score =  331 bits (848), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 101/659 (15%), Positives = 222/659 (33%), Gaps = 32/659 (4%)

Query: 163 LAALPIYSRNREFSGFRGFGI--------VHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214
           +AA PI + +   +G     +        +      +  RA   R D             
Sbjct: 196 IAARPIRTEDGRLAGMVAVSVDPKIFEDELRSVLPSDGGRATLLREDGIILARLPNSDAW 255

Query: 215 SSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQED 274
             V   K  + +  +  P  R     +S T+ +       + EK+PL+ +   SL E   
Sbjct: 256 RGVSVAKGAVMAHLATAP--RGTLLGTSATDGHERVIAYRRLEKHPLVVAVGMSLTEVLM 313

Query: 275 FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF 334
             + +            L                  +       E       +  P+  F
Sbjct: 314 TWSRDTALQGGATLLLALVTFGLAMVSDRRLAERQRVQQALAASEARYRMLTEHSPVGVF 373

Query: 335 VYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393
                G   YAN  +L L      + +                D+      +        
Sbjct: 374 QADAEGTCLYANERWLELAGRGRSELLGEK------WCQVVHPDDREAVAALWRGHVNGQ 427

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
               A +  ++ +      +       + +        G   +    +  +R++ +   +
Sbjct: 428 GEFLAEMRLMRGDGA-IRWVRGHAAALSVEEGPAGGLVGTIEDITAAKEAERRLRLSEEK 486

Query: 454 LCSILEATSDGIAI-INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
                 A+ D + I +  +G  +  N A + + GY   D++            P      
Sbjct: 487 FAKAFRASPDAMVISLTEDGRYIDLNDAFADMLGYSRLDLMGHTALGMGVWADPEDRARL 546

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIII--KKLPFSSCYSLTMHDISEWKQEKNK 570
           +         Q +   T    K  ++    I +    L    C      D+SE K  + +
Sbjct: 547 VEAARRDG--QVVNFETRLRRKNGEVFDTLIAVQKVVLDDLDCLLFICRDVSERKAMEAR 604

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
                   +  +     F    SH+++ PL  I G++++I+ +  G L +    E+  ++
Sbjct: 605 SRELLVRLDASNKELEQFAYVTSHDLQEPLRMIAGYAQLIERRYRGRLDDD-ADEFIAFL 663

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
                 +  ++ DLL+ S++E  ++   FE   + E + + ++ +     E    I    
Sbjct: 664 VDGAKRMQAMIRDLLEYSRVE--RLGGQFESFGMGEVLDDVMANLGAALTETGGRIEV-- 719

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN-EEVILRVRDTGVGMT 749
              +P++ AD   + ++  N++ NA+ +     Q +++ T        ++ V D G+G+ 
Sbjct: 720 -GPMPQVTADRSQMLRLLQNLIGNALKYRSPDRQPVVTVTAEPGAGGWVISVADNGIGIE 778

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
               ++    F ++    +   +GTG+GL + K +V+ + G+ ++ S P +G++     
Sbjct: 779 PAYFDRIFLVFQRLH--TREHYDGTGIGLAICKKIVERHGGRIWVESEPDRGSVFRFSL 835



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/265 (9%), Positives = 63/265 (23%), Gaps = 13/265 (4%)

Query: 68  LDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI 127
             SE  +        V   +  DA G     +E   +  G    +++G + C V      
Sbjct: 355 AASEARYRMLTEHSPVG-VFQADAEGTCLYANERWLELAGRGRSELLGEKWCQVVHPDDR 413

Query: 128 DPNNHIGDL-LKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHV 186
           +    +    +  Q  +  +  L    G      +   A  +        G    G +  
Sbjct: 414 EAVAALWRGHVNGQGEFLAEMRLMR--GDGAIRWVRGHAAALSVEEGPAGGL--VGTIED 469

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVE-KEKYDIFSQQSPPPHLRMKNKVSSLTE 245
                +     +  ++KF+           +   E             +   +++  +  
Sbjct: 470 ITAAKEAERRLRLSEEKFAKAFRASPDAMVISLTEDGRYIDLNDAFADMLGYSRLDLMGH 529

Query: 246 YY------AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
                   A  +D  +  +      +  +   +       +           L +     
Sbjct: 530 TALGMGVWADPEDRARLVEAARRDGQVVNFETRLRRKNGEVFDTLIAVQKVVLDDLDCLL 589

Query: 300 FEYLSHRNHPSLSAYFDEGENLTPE 324
           F         ++ A   E       
Sbjct: 590 FICRDVSERKAMEARSRELLVRLDA 614



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/265 (7%), Positives = 62/265 (23%), Gaps = 13/265 (4%)

Query: 70  SENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP 129
           SE  F             ++   G   ++++     +G     ++G     +   +  DP
Sbjct: 483 SEEKFAKAFRASPDAMVISLTEDGRYIDLNDAFADMLGYSRLDLMGHTA--LGMGVWADP 540

Query: 130 NNH---IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHV 186
            +    +    +       +T L    G      I +  + +   +          I   
Sbjct: 541 EDRARLVEAARRDGQVVNFETRLRRKNGEVFDTLIAVQKVVLDDLD------CLLFICRD 594

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY 246
                   A  + L  +    ++  +  + V         +        ++ +     + 
Sbjct: 595 VSERKAMEARSRELLVRLDASNKELEQFAYVTSHDLQEPLRMIAGYAQLIERRYRGRLDD 654

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTK--KQYFGTLQNNSKESFEYLS 304
            A +      +    + +    L E      +     +    +    +  N   +     
Sbjct: 655 DADEFIAFLVDGAKRMQAMIRDLLEYSRVERLGGQFESFGMGEVLDDVMANLGAALTETG 714

Query: 305 HRNHPSLSAYFDEGENLTPETVDKC 329
            R             +     +   
Sbjct: 715 GRIEVGPMPQVTADRSQMLRLLQNL 739


>gi|311070583|ref|YP_003975506.1| two-component sensor histidine kinase [Bacillus atrophaeus 1942]
 gi|310871100|gb|ADP34575.1| two-component sensor histidine kinase [Bacillus atrophaeus 1942]
          Length = 611

 Score =  331 bits (848), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 84/376 (22%), Positives = 156/376 (41%), Gaps = 27/376 (7%)

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             +    +   E E  +L S++   +DG+   NR G I+  N    +L     E  L  P
Sbjct: 248 TRELEDAQAMTEGERRKLSSVIAYMTDGVIATNRNGAIILLNSPALELLNVSRETALEMP 307

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCY 554
            T  L  +        + +  S      LE       ++  +L +   + +         
Sbjct: 308 ITSLLGIHENFTFEDLVEQQES----MLLEIE---REEQTTVLRVNFSVIEREHGKIDGL 360

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
              ++D++E ++   +              + +F+A VSHE+RTPLT +  + E +    
Sbjct: 361 IAVIYDVTEQEKIDQE--------------RREFVANVSHELRTPLTTMRSYLEALAEGA 406

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
           +          +          ++ +VNDLL +SK +S     + E +     +S  I  
Sbjct: 407 W--ENKDIAPRFLMVTQNETERMIRLVNDLLQLSKFDSKDYQFNREWIHFIRFISLIIDR 464

Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
            +    E+ +       +    +  D   + Q+  NI+SNA+ ++P GG +  S      
Sbjct: 465 FE-MTKEQHVEFIRQLPDRSLYVEIDQDKITQVLDNIISNALKYSPEGGHVTFSVNVNEE 523

Query: 735 EEVI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
           EE++ + V+D G+G+   ++EK  + F ++  ++  +  GTGLGL +AK MV A+ G  +
Sbjct: 524 EELLYISVKDEGIGIPKKDMEKIFERFYRVDKARTRKLGGTGLGLAIAKEMVQAHGGDIW 583

Query: 794 IFSTPAKGTLIEIIFP 809
             S   KGT +    P
Sbjct: 584 ADSIEGKGTTVTFTLP 599


>gi|262198967|ref|YP_003270176.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
 gi|262082314|gb|ACY18283.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
          Length = 990

 Score =  331 bits (848), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 106/743 (14%), Positives = 231/743 (31%), Gaps = 49/743 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG--K 146
           + ++GYL E+     +        ++   L ++      +        +   +   G  +
Sbjct: 130 LGSNGYLHEVGTVWSERFAYPRAMLLERPLLELVHEDDREAMARSLAQIANSDAACGAVE 189

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
           T L   +G   +    L+   +Y    +                     L        S 
Sbjct: 190 TRLRRAQGGYRW----LSWYMVYDAENQCVHLS----AQDVSEVKRQERLLAETQGAASI 241

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
                  H +      +I+      P   + +  + L  Y     +             E
Sbjct: 242 GGWELDLHDTTLYWTDEIYRIHDLSPDSYLPSPETVLAFYEPGSAERFGR-AVKRAARGE 300

Query: 267 SSLPEQEDFHTINLNQYTKKQ--YFGTLQNNSKESFEY-LSHRNHPSLSAYFDEGENLTP 323
                + +  T        +   + G         F          ++     E E    
Sbjct: 301 GGFDMEVELRTPAGRSVWCRNIGHMGFENGEVVRVFGSCQDVTEQRAIREAQRESEQQLR 360

Query: 324 ETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
             V    I   V    G + + N + L        + I +           +     A+ 
Sbjct: 361 SLVRDVGIGVMVQGPEGEILHCNRAALDALGLSEHEVIGMPAPRLLAYAIHEDGTPLALG 420

Query: 383 PVMLYRSDRTCIAA-SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
              L R+  T  +     L      R+  + +      + +             +    +
Sbjct: 421 SDPLSRALETGQSVKDVILGVPHTGRDEPVWLLVNVVSRIDAAGSLRWAVCSFADISARK 480

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
             +           ++ E    G+ + + +G ILS+N   S++ GY  + +   P    L
Sbjct: 481 RAEDTARESAAMFRAVYENAGLGVLMRDIDGAILSSNPTFSRMLGYSAKTLRSMPLDAML 540

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLT 557
                 +       +L+   R+T E       ++ +++   + +  +  +          
Sbjct: 541 HPGDRELGGDEHEALLA-GERETYEVDRRYVRRDGEIVWGHVTVSVVRGASDEPQYVVEM 599

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF-------SEVI 610
           + DI++ K+ + +L    ++A   +       A V+HEI  PLT ++G         E +
Sbjct: 600 IVDITDRKRMEAQLMLTDRLASLGTMA-----AGVAHEINNPLTWLMGNVSYVRESLEEL 654

Query: 611 KNQ-RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           +++            +           +  IV DL   ++    +  +      L E + 
Sbjct: 655 RDEIALDDDSADDLDKALADSLVGAERIRTIVQDLKLFARDREDEDGIA----DLGEVLH 710

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP----SGGQI 725
             + +++   +  R ++      ++P ++ D   + Q+  N+L NAIH  P       +I
Sbjct: 711 STLRMLRNELH-HRAVLEQKV-GDVPPVVGDPARLGQVFTNLLVNAIHALPDRDREENRI 768

Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
            I    +    V++ + D GVGM+     +   PF          G+GTGLGL +  +++
Sbjct: 769 EIRGVRSGRG-VVIEISDNGVGMSPETQARIFDPFYTTK----EVGQGTGLGLSICHSII 823

Query: 786 DANMGKFYIFSTPAKGTLIEIIF 808
               G+  + S   +GT   +  
Sbjct: 824 AQIGGRIEVDSELGQGTTFRVHL 846



 Score = 98.9 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 64/492 (13%), Positives = 122/492 (24%), Gaps = 40/492 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            DA   +   +          A    G  L  V       P    G+             
Sbjct: 22  TDADDRIAWANAAALALFDWDADGACGQSLSAVLRFQGPRPVLAPGESAAVCVLHGSAEA 81

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
              + GT   V              E SG R  G V V        A  K    + S L 
Sbjct: 82  SRVVHGTMRSVA-------------ENSGER-VGHVFVFTGQQTYEARAKHWLSQ-SSLL 126

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
               G +    E   ++S++   P   +  +   L   +    + +      +  S+ + 
Sbjct: 127 YALLGSNGYLHEVGTVWSERFAYPRAMLLERPL-LELVHEDDREAMARSLAQIANSDAAC 185

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
              +               Y      N                         L  ET   
Sbjct: 186 GAVETRLRRAQGGYRWLSWYMVYDAENQCVHLSAQDVSEVKRQE-------RLLAETQGA 238

Query: 329 CPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
             I  +         Y       +        +     +      P  ++          
Sbjct: 239 ASIGGWELDLHDTTLYWTDEIYRIHDLSPDSYLPSPETVLAFY-EPGSAERFGRAVKRAA 297

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
           R +         L   +     S+    I      +  E +   G   +  + R  +   
Sbjct: 298 RGEGG-FDMEVEL---RTPAGRSVWCRNIGHMGF-ENGEVVRVFGSCQDVTEQRAIREAQ 352

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP----FTVFLEQ 503
                QL S++     G+ +   EG IL  NRA     G    +++  P        + +
Sbjct: 353 RESEQQLRSLVRDVGIGVMVQGPEGEILHCNRAALDALGLSEHEVIGMPAPRLLAYAIHE 412

Query: 504 NTPSVMN--HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLT 557
           +   +      L+  L          + +  T  ++ + L + +     ++        +
Sbjct: 413 DGTPLALGSDPLSRALETGQSVKDVILGVPHTGRDEPVWLLVNVVSRIDAAGSLRWAVCS 472

Query: 558 MHDISEWKQEKN 569
             DIS  K+ ++
Sbjct: 473 FADISARKRAED 484



 Score = 47.7 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 31/245 (12%), Positives = 72/245 (29%), Gaps = 26/245 (10%)

Query: 334 FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393
              +   + +AN + L L  + +      +         P+                   
Sbjct: 21  MTDADDRIAWANAAALALFDWDADGACGQSLSAVLRFQGPRPVLAPGESAA--------- 71

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
                    +     ++ A   +     +    +  + G        +  + + +     
Sbjct: 72  ---------VCVLHGSAEASRVVHGTMRSVAENSGERVGHVFVFTGQQTYEARAKH---- 118

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
               L  +S   A++   G +       S+ F YP   +L +P    + ++    M   L
Sbjct: 119 ---WLSQSSLLYALLGSNGYLHEVGTVWSERFAYPRAMLLERPLLELVHEDDREAMARSL 175

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH 573
            +I + D        T     +     L   +     + C  L+  D+SE K+++  L+ 
Sbjct: 176 AQIANSDAACG-AVETRLRRAQGGYRWLSWYMVYDAENQCVHLSAQDVSEVKRQERLLAE 234

Query: 574 AKKIA 578
            +  A
Sbjct: 235 TQGAA 239


>gi|158421976|ref|YP_001523268.1| two-component sensor histidine kinase [Azorhizobium caulinodans ORS
           571]
 gi|158328865|dbj|BAF86350.1| two-component sensor histidine kinase [Azorhizobium caulinodans ORS
           571]
          Length = 586

 Score =  331 bits (848), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 112/572 (19%), Positives = 213/572 (37%), Gaps = 29/572 (5%)

Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
            ++    +       +S   +ED    +  +   +  +  L      +  ++        
Sbjct: 33  AIVMAVGFASFREFAASQHAREDLIYSSSIRAELQSIYEQLLTVESATRGFIITGEAEFR 92

Query: 312 SAYFDEGENLTPETVDKCPIPF----FVYSHGNLFYANPSFLLLTK----YKSVDDIEIA 363
               ++   +                       L     + L L       +   D   A
Sbjct: 93  PPLDEDRTRILARIAAVTKFAVERPEHTDDLARLKRLAEAELRLLGEMIDARMHSDATPA 152

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
           G +  +  +  L D  A     +  ++    A +AR   ++   +     T +    A  
Sbjct: 153 GSILQVRQSKGLMDQIAETVESIAEAE--IGAINARTQEVRVVGQR-TKTTLLALLGAAI 209

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
                    +    V  R  +R +   + +  +IL +  D I  +N EG I S N A ++
Sbjct: 210 AVVFGSTAVMLTHLVGRRRAERALGDALSRQRAILASAIDSIVTVNVEGRIESANPATTR 269

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           L G+  E+I  KP          +    ++TE+ S        +  +G  K+   + + +
Sbjct: 270 LLGWQPEEIAGKPLGTLFSLPEGTTPTDFMTELSSTAKDGGGVRELIGLRKDGGTVPVDV 329

Query: 544 IIKKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
            I ++  S        +HDI+E K+ +                K++F++ VSHE+RTPLT
Sbjct: 330 AIGRMRDSGGQNLVAVLHDITERKRAEV--------------MKNEFVSTVSHELRTPLT 375

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           +I G   ++     G L             ++   ++ ++ND+LDI K++S  +    + 
Sbjct: 376 SIAGSLGLLAGGATGSLPEGAQR-LVTIASQNCRRLVRLINDILDIEKMQSSGITFARDT 434

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           VSL E    ++     +A E ++ +         R+  D   + Q+  N+LSNA+ F+P+
Sbjct: 435 VSLAEVAERSVEQNSGFALEHQVALTLEVEPGDLRVTGDADRLIQVLTNLLSNAVKFSPA 494

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           G  + +S      + V   VRD G+G+           F Q  NS   +  GTGLGL +A
Sbjct: 495 GSTVEVSVARR-GDHVRATVRDHGMGIPESFRSAIFTRFAQADNSDTRQRGGTGLGLAIA 553

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
           + + D + G     +    GT   +  P  + 
Sbjct: 554 REIADHHDGTLSFETEEGVGTAFHLDLPALEA 585



 Score = 46.9 bits (110), Expect = 0.015,   Method: Composition-based stats.
 Identities = 35/333 (10%), Positives = 80/333 (24%), Gaps = 25/333 (7%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKRQNTWYGKTTLW 150
            G ++  +    + +G    ++ G  L  + S      P + + +L        G   L 
Sbjct: 257 EGRIESANPATTRLLGWQPEEIAGKPLGTLFSLPEGTTPTDFMTELSSTAKDGGGVRELI 316

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR------------ALGK 198
            +      VP+D+A   +     +        ++H                      L  
Sbjct: 317 GLRKDGGTVPVDVAIGRMRDSGGQ----NLVAVLHDITERKRAEVMKNEFVSTVSHELRT 372

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY-------AHKD 251
            L      L  +  G +    E        +     R+   ++ + +             
Sbjct: 373 PLTSIAGSLGLLAGGATGSLPEGAQRLVTIASQNCRRLVRLINDILDIEKMQSSGITFAR 432

Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
           D +   +    + E++S    E    + L             +   +    L        
Sbjct: 433 DTVSLAEVAERSVEQNSGFALEHQVALTLEVEPGDLRVTGDADRLIQVLTNLLSNAVKFS 492

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
            A      ++     D        +  G       +           D    GG    L 
Sbjct: 493 PAGSTVEVSVARRG-DHVRATVRDHGMGIPESFRSAIFTRFAQADNSDTRQRGGTGLGLA 551

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
             +   ++    +     +    A    L  ++
Sbjct: 552 IAREIADHHDGTLSFETEEGVGTAFHLDLPALE 584


>gi|153871221|ref|ZP_02000448.1| Signal transduction histidine kinase [Beggiatoa sp. PS]
 gi|152072313|gb|EDN69552.1| Signal transduction histidine kinase [Beggiatoa sp. PS]
          Length = 711

 Score =  331 bits (848), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 96/369 (26%), Positives = 174/369 (47%), Gaps = 7/369 (1%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV-FLEQ 503
           + +      +  +L  T  G+ +   +G +++ N A +++ G  + + L+  +    + +
Sbjct: 64  QNLHDSQQNIQYLLNTTLIGLGLWQLDGTLVTINPAYAQMIGRSITETLKLNYWNDIVVE 123

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL--TMHDI 561
              +     L  +   +     EK      K+   + +++  + +     Y     + +I
Sbjct: 124 ENITNEQTQLQVLKVGECYGPFEKEF--RHKDGYYVPVKLSARIIEREGEYYAWSHVENI 181

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           S  K    +L  AKK AE+ +  KS FLA +SHE+RTP+  I+G++E +  +      NP
Sbjct: 182 SGQKWMIMELKQAKKKAEEANISKSLFLANMSHELRTPMNTIVGYTE-MLEEEIKECPNP 240

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
             ++    I  +   +L +V+ +LDISKIE+GK++L+ E   L   +   I+ +Q    +
Sbjct: 241 NLLQDIKSIHAAAKHLLGLVDGILDISKIEAGKIHLYSERFDLKTMIQNTITTIQPIIEK 300

Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILR 740
           K   ++ SF  ++     DL  V+QI +N+LSNA  FT  G   + +    T  + + +R
Sbjct: 301 KANALQISFDEDLGEAYTDLTKVRQILINLLSNASKFTDQGIITLEVRRQRTQGDWITIR 360

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V D G+GMTN +     + F Q   S   +  GTGLGL + K       G  +I S   K
Sbjct: 361 VSDEGIGMTNEQQANLFQVFTQADASISRKYGGTGLGLAITKHFTQMLGGTIHIESEFGK 420

Query: 801 GTLIEIIFP 809
           G+  ++  P
Sbjct: 421 GSHFKVRLP 429


>gi|213970477|ref|ZP_03398605.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. tomato T1]
 gi|213924795|gb|EEB58362.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. tomato T1]
          Length = 746

 Score =  331 bits (848), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 130/607 (21%), Positives = 236/607 (38%), Gaps = 28/607 (4%)

Query: 222 YDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTI--N 279
            +  + Q+     R+      +   +    +   + +  LLT +E  LP   +   +   
Sbjct: 10  AERQTAQAEEDVRRVLLVQGDIQTLHTQIAEGAASVRGYLLTHQEDFLPGYINAQPLINA 69

Query: 280 LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP--FFVYS 337
                             +S E L       L      G                     
Sbjct: 70  ALVRLDANIRDQQMREHLKSIEPLIRTKVDGLERLRSMGREDHENVAAILVENKYVLDQL 129

Query: 338 HGNLFYANPSFLLLTKYKSVDDIEIAGGL--STLLDAPKLSDNNAIKPVMLYRSDRTCIA 395
              +         L   ++         L  STLL A        +  +ML +       
Sbjct: 130 RERIGVMREREDALLAERTEAAAATRERLLWSTLLAAACGIFGAILAVLMLSKG------ 183

Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
             AR+H +Q N +       +  +   +         +          +R +     +L 
Sbjct: 184 IVARVHQVQRNAQRLALGHPLLPQPPEKDEIGQLGTRLVEAGQLLAERERALRDNEERLR 243

Query: 456 SILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
            I+E   D GI  ++R G + + N    ++ GY  ++I+ + F+VF              
Sbjct: 244 LIIEGVKDYGIFALDRNGYVTTWNAGAERIKGYTEQEIIGQHFSVFYLPQECPQHPDM-- 301

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNK 570
            +    +     + +    K+       ++I     S      +S    DIS+ +  +  
Sbjct: 302 ALHEATVNGRYTEESWRRRKDGSRFWASVVITAQYDSNDELRGFSKITRDISDRRVAEIA 361

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           L  A++ AE+ S  KS+FL+R+SHE+RTPL +I+GF++++                  +I
Sbjct: 362 LGTAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLL-----DMDSPASQRPQVGHI 416

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI-RTS 689
            R+G  +L ++N++LDI++IE+G ++L  EPVSL   + E + LV   A +  I +    
Sbjct: 417 LRAGQHLLKLINEVLDIARIEAGHVSLSLEPVSLSSVLKETLVLVSPMAADGNIELKELP 476

Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749
           +  +   ++AD + + Q+ LN+LSNAI +    GQ+ I    ++   V + V DTG G+ 
Sbjct: 477 YLPDELGVIADRQRLVQVLLNLLSNAIKYNRPDGQVRIEVDRSAE-HVTVSVVDTGYGIA 535

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
              L +  KPF ++        EGTGLGL L+K+M++   G   + +T  +G    +  P
Sbjct: 536 PERLGQLFKPFERLDA--NPSVEGTGLGLALSKSMLEMMKGTLSVQTTQNEGCRFTLALP 593

Query: 810 LYDTSHP 816
                 P
Sbjct: 594 FVAVHAP 600



 Score = 51.2 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/265 (9%), Positives = 68/265 (25%), Gaps = 20/265 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH--IDPNNHIGDLLKRQNTW 143
            + +D +GY+   +    +  G    ++IG               P+  + +       +
Sbjct: 254 IFALDRNGYVTTWNAGAERIKGYTEQEIIGQHFSVFYLPQECPQHPDMALHEATVNGR-Y 312

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGF---------RGFGIVHVNRVDNDPR 194
             ++     +G+  +  + + A   Y  N E  GF         R    + +     +  
Sbjct: 313 TEESWRRRKDGSRFWASVVITAQ--YDSNDELRGFSKITRDISDRRVAEIALGTAREEAE 370

Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254
              +   +  S +    +   +       +    SP         +    ++      + 
Sbjct: 371 RASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSPASQRPQVGHILRAGQHLLKL--IN 428

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
           +      + +   SL  +    +       K+         +  + E       P     
Sbjct: 429 EVLDIARIEAGHVSLSLEPVSLSS----VLKETLVLVSPMAADGNIELKELPYLPDELGV 484

Query: 315 FDEGENLTPETVDKCPIPFFVYSHG 339
             + + L    ++            
Sbjct: 485 IADRQRLVQVLLNLLSNAIKYNRPD 509


>gi|182414885|ref|YP_001819951.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
 gi|177842099|gb|ACB76351.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
          Length = 1222

 Score =  331 bits (848), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 108/750 (14%), Positives = 229/750 (30%), Gaps = 73/750 (9%)

Query: 87   WNIDAHGYLKEISEELPKTIGN-YAFKMIGMRLCDVSDILHIDPNNHIGDL-LKRQNTWY 144
            + ID     + ++       G   A +++G            D    +    L  +    
Sbjct: 365  FRIDRAARFEAVNSAWLAMHGFTRAEEVLGQDYLTTQAQEDADAAADVVRRALAGEAIAA 424

Query: 145  GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            G+      +G+  Y     +  P+  R RE     GF I           A  K L    
Sbjct: 425  GEFRRRRADGSTGYH--TFSLHPVR-RGREIVAIEGFLI--DTTPLKQAMADYKMLFDTM 479

Query: 205  SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
                 + +     +    D+      P   R                DV+       +  
Sbjct: 480  LDGFALHEIVRDEQGRAVDLRYTAVNPAFERQTG---------IRAADVVGRRMSEAIPG 530

Query: 265  EESSLPEQEDFHTINLNQYTKKQYFGTLQNN------SKESFEYLSHRNHPSLSAYFDEG 318
             E    E              ++Y   L  +           + +      +     +  
Sbjct: 531  MEPEWMEAYRLVAETGEPRVFERYSQPLNRHFTVSAFRPSVGQLVCVFVDITARKLAEIE 590

Query: 319  ENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
                   V++ P+   +    G + Y NP F   T Y     +E   G +  + +   + 
Sbjct: 591  LRKLSRAVEQSPVSVIITETSGEIEYVNPWFTETTGYS----LEEVRGKNPRVLSSGETS 646

Query: 378  NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
                + +    +              +                 +   +      ++ + 
Sbjct: 647  GETYREMWQAITSGREWRGEFHN---RRKDGTLFWEAATIGPIFDDEGKISRFLAVKEDI 703

Query: 438  VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
             + +    ++  +     ++L+   DGI +   + ++   NRA  +++G P  + L    
Sbjct: 704  TERKRASERIREQ----AALLDVAHDGILVTTMDRVVTYWNRAAERMYGIPATEALGHTL 759

Query: 498  TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---- 553
               +      V       ++                +    + +R+    +  ++     
Sbjct: 760  DELIPGENSEVRREEWQRLIERGEWSG---ERQHVVRSGGTIDVRVHATLVRNAAGQPTS 816

Query: 554  YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
              + + D++  K+ + +   A++I            + V+H++   LT I+   E+++  
Sbjct: 817  VLIVVTDVTASKRMEKQFLRAQRI-----ESLGALASGVAHDLNNVLTPILMSVELLR-- 869

Query: 614  RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
                  N    +    +  S     DIV  LL   +           P+++   + +   
Sbjct: 870  --PLAQNQADRDMLQLLSDSARRGSDIVQQLLLFGR----GSESPRVPLNVAGILKDTGR 923

Query: 674  LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
            L++    +K I+       ++  + AD   + Q+ LN+  NA    P GG++ I+  +  
Sbjct: 924  LMRETFPKK-IVQTVYAPADLRLVEADRTQIHQVVLNLCVNARDAMPEGGRLQITAENVE 982

Query: 734  --------------NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
                             V + VRDTG G++   L+K   PF          G+GTGLGL 
Sbjct: 983  VEEELAQRHAAKGAGRYVRITVRDTGAGISPENLDKIFDPFFTTKP----VGQGTGLGLA 1038

Query: 780  LAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
                +V  + G   + S   +G   E+  P
Sbjct: 1039 TVLGIVRGHGGFVDVKSQLGRGAAFEVYLP 1068



 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 52/514 (10%), Positives = 132/514 (25%), Gaps = 55/514 (10%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
             D  G L   +E      G    ++    + D+      +        ++       +T
Sbjct: 245 ETDESGRLIAANEAFLMATGYSMPELATRTIADLEANESPEDVQRHLAQVRLAGRVRFET 304

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
            L   +G  +   +++  +P           R   I+      N    + +  +++F   
Sbjct: 305 RLRAHDGRLIDFEVNVVHVPGRG--------RFVSILRDITQRNRAEQVLRLSEERFREA 356

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
            E                +  S    +                 D L T+      +   
Sbjct: 357 IEHAGAGYFRIDRAARFEAVNSAWLAMH-----GFTRAEEVLGQDYLTTQAQEDADAAAD 411

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQ------NNSKESFEYLSHRNHPSLSAYFDEGENL 321
            +        I   ++ +++  G+        +  +   E ++       +    +    
Sbjct: 412 VVRRALAGEAIAAGEFRRRRADGSTGYHTFSLHPVRRGREIVAIEGFLIDTTPLKQAMAD 471

Query: 322 TPETVDKCPIPFFVYS----------HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
                D     F ++                  NP+F   T  ++ D +        + +
Sbjct: 472 YKMLFDTMLDGFALHEIVRDEQGRAVDLRYTAVNPAFERQTGIRAADVVGR-----RMSE 526

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
           A    +   ++   L                +              F  +   P      
Sbjct: 527 AIPGMEPEWMEAYRLVAETGEPRVFERYSQPL-----------NRHFTVSAFRPSVGQLV 575

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
            +  +    ++ + ++     +L   +E +   + I    G I   N   ++  GY +E+
Sbjct: 576 CVFVDITARKLAEIELR----KLSRAVEQSPVSVIITETSGEIEYVNPWFTETTGYSLEE 631

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
           +  K   V     T       + + ++               K+  L      I  +   
Sbjct: 632 VRGKNPRVLSSGETSGETYREMWQAITSGREWRG--EFHNRRKDGTLFWEAATIGPIFDD 689

Query: 552 SC----YSLTMHDISEWKQEKNKLSHAKKIAEKE 581
                 +     DI+E K+   ++     + +  
Sbjct: 690 EGKISRFLAVKEDITERKRASERIREQAALLDVA 723



 Score =  127 bits (318), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 40/308 (12%), Positives = 92/308 (29%), Gaps = 33/308 (10%)

Query: 287 QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY--A 344
              G L           S R    + A     E    E  +  P P  VY    L +   
Sbjct: 73  WGAGVLALIGGHRVAQASVRERMRMVAALRTSEASYRELFENSPNPMLVYDVATLQFLAV 132

Query: 345 NPSFLLLTKYKSVDDIEIAGGLST---------LLDAPKLSDNNAIKPVMLYRSDRTCIA 395
           N +      Y   D + +  G                 +        P    R D +C+ 
Sbjct: 133 NDAAQRQYGYAREDFLRLTVGDIHPAAEMQQLESTLRTERPPLAFSGPWTHLRHDGSCLR 192

Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
                H + W+   +  +                      +  + +     +E + +   
Sbjct: 193 VEVSSHALSWDGRAARCVVV-------------------TDISEQQRLNATVEEQAVTYQ 233

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           ++L A  DG+   +  G +++ N A     GY + ++  +         +P  +  +L +
Sbjct: 234 TLLSAALDGVVETDESGRLIAANEAFLMATGYSMPELATRTIADLEANESPEDVQRHLAQ 293

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575
           +        +   T     + +L+   + +  +P    +   + DI++  + +  L  ++
Sbjct: 294 VRLAGR---VRFETRLRAHDGRLIDFEVNVVHVPGRGRFVSILRDITQRNRAEQVLRLSE 350

Query: 576 KIAEKESS 583
           +   +   
Sbjct: 351 ERFREAIE 358



 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 45/504 (8%), Positives = 118/504 (23%), Gaps = 40/504 (7%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150
           A      +++   +  G      + + + D+     +          +    + G  T  
Sbjct: 125 ATLQFLAVNDAAQRQYGYAREDFLRLTVGDIHPAAEMQQLESTLRTERPPLAFSGPWTHL 184

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
             +G+ L V +   AL    R           +V          A  +     +  L   
Sbjct: 185 RHDGSCLRVEVSSHALSWDGRAAR------CVVVTDISEQQRLNATVEEQAVTYQTLLSA 238

Query: 211 KKGHSSVEKEKYDIFSQQSP---PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
                    E   + +            M    +         +     +++        
Sbjct: 239 ALDGVVETDESGRLIAANEAFLMATGYSMPELATRTIADLEANESPEDVQRHLAQVRLAG 298

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
            +  +      +      +     +    +                     E    E ++
Sbjct: 299 RVRFETRLRAHDGRLIDFEVNVVHVPGRGRFVSILRDITQRNRAEQVLRLSEERFREAIE 358

Query: 328 KCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
                +F +         N ++L +  +   +++    G   L    +   + A   V  
Sbjct: 359 HAGAGYFRIDRAARFEAVNSAWLAMHGFTRAEEVL---GQDYLTTQAQEDADAAADVVRR 415

Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
             +     A   R    +   + S            +  E +   G   +    +     
Sbjct: 416 ALAGEAIAAGEFR----RRRADGSTGYHTFSLHPVRRGREIVAIEGFLIDTTPLKQAMAD 471

Query: 447 MEIEVMQLCSILEATSDGI----AIINREG-----IILSTNRAVSKLFGYPVEDILRKPF 497
                     + +   DG      + + +G        + N A  +  G    D++ +  
Sbjct: 472 -------YKMLFDTMLDGFALHEIVRDEQGRAVDLRYTAVNPAFERQTGIRAADVVGRRM 524

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT 557
           +  +              +      +  E+    S    +  ++       P        
Sbjct: 525 SEAIPGM-EPEWMEAYRLVAETGEPRVFER---YSQPLNRHFTVSA---FRPSVGQLVCV 577

Query: 558 MHDISEWKQEKNKLSHAKKIAEKE 581
             DI+  K  + +L    +  E+ 
Sbjct: 578 FVDITARKLAEIELRKLSRAVEQS 601



 Score = 93.9 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/398 (11%), Positives = 92/398 (23%), Gaps = 25/398 (6%)

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR---MKNKVSSL 243
            R      A  +  +  +  L E       V       F   +     +    +     L
Sbjct: 91  VRERMRMVAALRTSEASYRELFENSPNPMLVYDVATLQFLAVNDAAQRQYGYAREDFLRL 150

Query: 244 TEYYAHKD---DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF 300
           T    H       L++           S P     H  +  +     +  +    +    
Sbjct: 151 TVGDIHPAAEMQQLESTLRTERPPLAFSGPWTHLRHDGSCLRVEVSSHALSWDGRAARCV 210

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDD 359
                     L+A  +E        +             G L  AN +FL+ T Y   + 
Sbjct: 211 VVTDISEQQRLNATVEEQAVTYQTLLSAALDGVVETDESGRLIAANEAFLMATGYSMPE- 269

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
           +               S  +  + +   R          RL     +    +        
Sbjct: 270 LATRTIAD---LEANESPEDVQRHLAQVRLAGRVR-FETRLRA---HDGRLIDFEVNVVH 322

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
                P       I  +       ++ + +   +    +E    G   I+R     + N 
Sbjct: 323 V----PGRGRFVSILRDITQRNRAEQVLRLSEERFREAIEHAGAGYFRIDRAARFEAVNS 378

Query: 480 AVSKLFGYPV-EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
           A   + G+   E++L + +     Q         +   L+ +              +   
Sbjct: 379 AWLAMHGFTRAEEVLGQDYLTTQAQEDADAAADVVRRALAGEA--IAAGEFRRRRADGST 436

Query: 539 LSLRIIIKKLPFSSCYSLT---MHDISEWKQEKNKLSH 573
                 +  +            + D +  KQ       
Sbjct: 437 GYHTFSLHPVRRGREIVAIEGFLIDTTPLKQAMADYKM 474


>gi|329901629|ref|ZP_08272868.1| sensor histidine kinase, putative [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327549058|gb|EGF33662.1| sensor histidine kinase, putative [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 762

 Score =  331 bits (848), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 94/391 (24%), Positives = 168/391 (42%), Gaps = 19/391 (4%)

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR--KPF 497
            ++ K  +     Q  S++             G +L  +  +  L G+PV    +  +  
Sbjct: 232 RQLFKNALRDRERQYRSLIANLPGAAFRRRVGGPMLFVSDGIETLSGWPVASFFQGQQDL 291

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---- 553
              +  +    +     + ++   R T+E   +        +     +     +      
Sbjct: 292 RQLVHPDDQPAVQEVWQQAIASSGRYTVEYRLMLRDGSHLQVWESGSVLHADHTDHIDHA 351

Query: 554 ----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                   + DIS+  + K +   AK  AE+ ++ KS FL+ +SHEIRTP+  IIG + +
Sbjct: 352 GDIWVDGVIFDISQQHRIKEQWRAAKTCAEQANAAKSVFLSTMSHEIRTPMNGIIGMTGL 411

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           +         N    E+A  I+ S + +L ++ND+LD S+IE+GK+ +     +L   V+
Sbjct: 412 LLETPL----NTEQREFARIIETSADALLTVINDILDFSRIEAGKLMVESVAFALPATVA 467

Query: 670 EAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
             I ++   A +K + +  +    +P  ++ D   ++QI LN+L NAI FT +G ++ + 
Sbjct: 468 GCIDVIAGKACDKGLALNCTIDPALPVFVMGDAGRLRQILLNLLGNAIKFTATG-KVALH 526

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
            T      V   V D+G+G+      +   PF QI  S   +  GTGLGL + K +V+  
Sbjct: 527 VTPVLAGAVRFVVADSGIGIDQKNAAELFIPFHQIDGSITRKYGGTGLGLSITKRLVELM 586

Query: 789 MGKFYIFSTPAKGTLIEIIFPLY---DTSHP 816
            G     S P +G    +  PL      S P
Sbjct: 587 GGTIGFESVPGQGATFWVELPLAVAEPVSAP 617


>gi|86607271|ref|YP_476034.1| sensory box histidine kinase [Synechococcus sp. JA-3-3Ab]
 gi|86555813|gb|ABD00771.1| sensory box histidine kinase [Synechococcus sp. JA-3-3Ab]
          Length = 667

 Score =  331 bits (848), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 88/382 (23%), Positives = 177/382 (46%), Gaps = 26/382 (6%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            ++     +L +++ +  D   +++ E  +L  N A S++FG+  E +L KP    L ++
Sbjct: 279 EELAAAKAKLETLVFSIVDAAILLDAEFRVLLLNPAASRMFGWEGEPVLGKPLPELLPED 338

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDI 561
               +   L +I     ++  E     S   ++++ + +     P         +T+ DI
Sbjct: 339 LRQQLARPLMQIAR-GDQEAEEIRVNLSGPTKRVIRILLSPVSDPRRQNLKGIVMTVQDI 397

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           +                 + +  K+ F++ +SHE+RTPL +I  F E +  +    +   
Sbjct: 398 TR--------------EVELNEAKAQFISNISHELRTPLFSIKSFIETLY-EYGEQMSPE 442

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
             ++Y    +R  + +  +VND+LD+S++ESGK   HFE V +   + + +    L A +
Sbjct: 443 ERLDYLEIANRETDRLTRLVNDVLDLSRLESGK-QYHFEAVDIAAVIEQTLRTHHLQARD 501

Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST--THTSNEE--- 736
           K I +R     ++P +  +   + Q+  N+L NA+ FTPSGG + +       ++     
Sbjct: 502 KGIQLRKFVDPDLPLVWGNYDLLLQVMTNLLGNALKFTPSGGLVTVHAHPVVQADGSPQA 561

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           V + V DTG+G+   + E+    F ++ N +    EGTGLGL + + +++ +  +  + S
Sbjct: 562 VRVAVADTGIGIAPEDQERIFDRFFRVEN-RVHTLEGTGLGLAIVRNILEKHHTRICLES 620

Query: 797 TPAKGTLIEIIFPLYDTSHPHD 818
              +G+       LY  + P +
Sbjct: 621 KLEQGSTFWFDLHLYTENGPLE 642



 Score = 51.2 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 27/253 (10%), Positives = 62/253 (24%), Gaps = 15/253 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +DA   +  ++    +  G     ++G  L ++               + R +    +  
Sbjct: 302 LDAEFRVLLLNPAASRMFGWEGEPVLGKPLPELLPEDLRQQLARPLMQIARGDQEA-EEI 360

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
              + G    V I +   P+    R+       GIV   +       L +   +  S++ 
Sbjct: 361 RVNLSGPTKRV-IRILLSPVSDPRRQ----NLKGIVMTVQDITREVELNEAKAQFISNIS 415

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE------KYPLL 262
              +      K   +   +           +     E    + D L            L 
Sbjct: 416 HELRTPLFSIKSFIETLYE---YGEQMSPEERLDYLEIANRETDRLTRLVNDVLDLSRLE 472

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
           + ++      +    I     T            ++  +        +         NL 
Sbjct: 473 SGKQYHFEAVDIAAVIEQTLRTHHLQARDKGIQLRKFVDPDLPLVWGNYDLLLQVMTNLL 532

Query: 323 PETVDKCPIPFFV 335
              +   P    V
Sbjct: 533 GNALKFTPSGGLV 545


>gi|91774323|ref|YP_567015.1| multisensor signal transduction histidine kinase [Methanococcoides
           burtonii DSM 6242]
 gi|91713338|gb|ABE53265.1| HATPase domain-containing multisensor signal transduction histidine
           kinase [Methanococcoides burtonii DSM 6242]
          Length = 505

 Score =  331 bits (848), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 99/450 (22%), Positives = 198/450 (44%), Gaps = 8/450 (1%)

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL-HTIQWNRENSLAMTFIPFEKANQFP 425
             +L    L + +  +   L + D +       +  +I    E + A+     +   +  
Sbjct: 58  DLVLLNSTLPEIDGYEVCRLLKRDESNKVLPVIMITSITDEDEKTKAIESKADDLLVRPV 117

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
           + +         +  +    ++  E  Q    ++     I +I+++  +   N+    + 
Sbjct: 118 DILELTTRVRSLLRMKELHDQLVKEKDQAQKYVDVAGSIIGVISKDLKVTLVNQKACDVL 177

Query: 486 GYPVEDILRKP-FTVFLEQNTPSVMNHYLTEILSL--DLRQTLEKITLGSTKEEKLLSLR 542
           GY  ++I+ K  F  FL       +      ++    +  +  EK  L  T EE+L+   
Sbjct: 178 GYEKDEIIGKNWFDAFLPGYVRERIKEGYIGVIEGKLEPPEYSEKPILNKTNEERLIFWH 237

Query: 543 IIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
            ++ +   ++      +  DI+E K  +  +  A +  E   + K  FL  ++HE+RTPL
Sbjct: 238 DVVLRDKDNNIIGTISSGDDITERKIAEKAMEEANRELELLDNIKDQFLTNLTHELRTPL 297

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
            +I GF+E++     GP+ N       + + R+   +  +V  LL +S   +  +  + +
Sbjct: 298 ISIKGFTELMLEDHMGPI-NDAQKNAIHTVLRNSERLRHLVESLLYVSGEHTKNIKYNMD 356

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720
            +SL +   E +        +K + I  +   ++P IL D   +K++  ++L NAI FTP
Sbjct: 357 VLSLTKITEEILETFTAPILKKGLTIERNIQTDLPTILGDKDHLKRMINHLLDNAIKFTP 416

Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
            GG+I IS     +E VI+ + DTG+G+    L      F Q+  S + +  GTG+GL +
Sbjct: 417 EGGKIGIS-ALHDSESVIINIEDTGIGIPEELLPNIFSRFYQVDGSTRRKYGGTGVGLHI 475

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            K +++A+ G   + S   +GT+I +  P+
Sbjct: 476 CKKIIEAHKGSLSVSSKIGEGTIISVKLPI 505



 Score = 45.4 bits (106), Expect = 0.038,   Method: Composition-based stats.
 Identities = 16/143 (11%), Positives = 38/143 (26%), Gaps = 12/143 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN------NHIGDLLKRQNT 142
           I     +  ++++    +G    ++IG    D     ++           I   L+    
Sbjct: 160 ISKDLKVTLVNQKACDVLGYEKDEIIGKNWFDAFLPGYVRERIKEGYIGVIEGKLEPPE- 218

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
           +  K  L       L    D+    +  ++    G    G               +  ++
Sbjct: 219 YSEKPILNKTNEERLIFWHDVV---LRDKDNNIIGTISSG--DDITERKIAEKAMEEANR 273

Query: 203 KFSHLHEIKKGHSSVEKEKYDIF 225
           +   L  IK    +    +    
Sbjct: 274 ELELLDNIKDQFLTNLTHELRTP 296


>gi|168217044|ref|ZP_02642669.1| sensory box histidine kinase [Clostridium perfringens NCTC 8239]
 gi|182380977|gb|EDT78456.1| sensory box histidine kinase [Clostridium perfringens NCTC 8239]
          Length = 571

 Score =  330 bits (847), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 84/375 (22%), Positives = 171/375 (45%), Gaps = 39/375 (10%)

Query: 444 KRKMEIEVMQ-------LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             ++EI + +       L +IL++   G+   +R+  +L  N    K+FG   E I  K 
Sbjct: 226 AEQLEITMERFKDKQNGLEAILKSMGSGVIAFDRDMNVLMINPYAKKIFGISGEIIGNKL 285

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR-IIIKKLPFSSCYS 555
                ++            +         E     +  + K+L +R   I   P      
Sbjct: 286 LDYITDKEVLKAFFDEKDRV---------EIEVNYND-DPKILKIRKASIINEPEIIGTV 335

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
           + + DI++ K+ +              + +S F+A +SHE++TPLT+I GF+E ++    
Sbjct: 336 VVIQDITDIKKLE--------------NMRSQFVANISHELKTPLTSIKGFAETLR---- 377

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
               +    ++ + ID   + +  ++ D+L + +IE  +  +  E  ++DE + +   L+
Sbjct: 378 YVDDDETRNKFLSIIDEESDRLARLLEDILCLYEIEQKRSTV-LEEFNVDEEIEKVYMLL 436

Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
              A +K + I     +N   ++ D    KQ+ LN++SN++ +T  GG++ +  ++  + 
Sbjct: 437 NDQAKKKGVEIFLDTNSNC-VLMGDKDKFKQMLLNLVSNSVKYTEKGGKVRVE-SYNRDM 494

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            +IL + D G+G++  +L +  + F ++  ++     GTGLGL + K +V    G+  + 
Sbjct: 495 NLILVIEDNGIGISAEDLPRIFERFYRVDKARSRESGGTGLGLAIVKHIVRLFDGEINVT 554

Query: 796 STPAKGTLIEIIFPL 810
           S    GT I I  P+
Sbjct: 555 SELGVGTKIVITIPI 569


>gi|294055429|ref|YP_003549087.1| multi-sensor hybrid histidine kinase [Coraliomargarita akajimensis
           DSM 45221]
 gi|293614762|gb|ADE54917.1| multi-sensor hybrid histidine kinase [Coraliomargarita akajimensis
           DSM 45221]
          Length = 885

 Score =  330 bits (847), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 100/465 (21%), Positives = 182/465 (39%), Gaps = 24/465 (5%)

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE------NSLAMTFIPFEKANQ 423
               +              +               W+             +       + 
Sbjct: 12  YFGAESRGVALESIFGFREAKGFYAVLEQLAIGKSWSGRVSALRSRHGISSVELMIHRDV 71

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV-- 481
              +              + +     E+  L  +L+ T + +   + +G  + TNRA   
Sbjct: 72  EDSDRLWVYTLEHPSVDGVLRFSSRSEMQLLQVLLDNTLEYVFFRDLQGRFILTNRAFDV 131

Query: 482 SKLFGY-PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
           +   G    E  + +    F+   T S ++     +LS  +      +            
Sbjct: 132 AVSTGMGRPESPVGQRLDDFISSETASWIHDIDQRVLSAGVPSV-NNVAHFVFNNGTRHW 190

Query: 541 LRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
           L++    +       +       DIS+ K+ +++L  A K A+  +  K +FLA +SHEI
Sbjct: 191 LQMSTVPVRSGQGLVVGSVSVARDISDLKRTESELMTAMKEAQAANRAKGEFLAAMSHEI 250

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTP+  +IG SE+ +        +     Y + + + GN +L +VND+LD SKIE+G++N
Sbjct: 251 RTPINGVIGASELCQETEL----DAEQRAYLDTVIQCGNTLLSLVNDVLDFSKIEAGQLN 306

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNA 715
           L     + +  + E I        +K I +  S  + +P+ ++ D   +KQI  N+L NA
Sbjct: 307 LEQLNFNPEAVLEEVIEEFAGTVKKKGIELILSCDDRMPKYVIGDPTRLKQIFYNLLGNA 366

Query: 716 IHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           + FT +G +I++S            +  +VRDTG+G++    E     F Q   S   R 
Sbjct: 367 VKFTEAG-EIVLSAHIVERSAQLAVIRFKVRDTGIGISETRREAIFSSFTQEDMSTTRRY 425

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
            GTGLGL + K + +   G   + S   +G+   +  P   +S P
Sbjct: 426 GGTGLGLAICKELTELMAGSLSVDSRVGEGSTFTLEVPFELSSTP 470



 Score = 41.2 bits (95), Expect = 0.67,   Method: Composition-based stats.
 Identities = 20/273 (7%), Positives = 60/273 (21%), Gaps = 13/273 (4%)

Query: 80  PRTVRFTWNIDAHGYLKEISEEL--PKTIGN-YAFKMIGMRLCDVSDILHID-PNNHIGD 135
             T+ + +  D  G     +       + G       +G RL D          ++    
Sbjct: 107 DNTLEYVFFRDLQGRFILTNRAFDVAVSTGMGRPESPVGQRLDDFISSETASWIHDIDQR 166

Query: 136 LLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA 195
           +L            + +        + ++ +P+ S      G     +           +
Sbjct: 167 VLSAGVPSVNNVAHF-VFNNGTRHWLQMSTVPVRSGQGLVVG--SVSVARDISDLKRTES 223

Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYD-----IFSQQSPPPHLRMKNKVSSLTEYYAHK 250
                 K+    +  K    +    +       +           +  +  +  +     
Sbjct: 224 ELMTAMKEAQAANRAKGEFLAAMSHEIRTPINGVIGASELCQETELDAEQRAYLDTVIQC 283

Query: 251 DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310
            + L +    +L   +    +          +   ++         K+    L       
Sbjct: 284 GNTLLSLVNDVLDFSKIEAGQLNLEQLNFNPEAVLEEVIEEFAGTVKKKGIELILSCDDR 343

Query: 311 LSAYFDEGENLTPETV-DKCPIPFFVYSHGNLF 342
           +  Y         +   +           G + 
Sbjct: 344 MPKYVIGDPTRLKQIFYNLLGNAVKFTEAGEIV 376


>gi|186682207|ref|YP_001865403.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186464659|gb|ACC80460.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 1098

 Score =  330 bits (847), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 141/734 (19%), Positives = 272/734 (37%), Gaps = 50/734 (6%)

Query: 107 GNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIE---------GTNL 157
           G +  K+ G    +   I   D   H   LL+ +  +  +T  W            G   
Sbjct: 133 GQFEVKLSGKSTGNEIRIYAADQPGHYTQLLRSKPNYDPRTRPWYQSAVKSKTASWGGIY 192

Query: 158 YV-----PIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212
            +      +  A+LPIY       G             +      K      + + E + 
Sbjct: 193 KLFTTPKYVLNASLPIYDDGGNLLGVAAVDFS--LTGISQYLRTLKIGRTGETFILERQT 250

Query: 213 GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ 272
           G           +   +    +  +N V           D+L       L      L + 
Sbjct: 251 GLLVGSSATQQPYIIANSTAPIIDQNPV---RVQAIASSDILTRRTADFLQQHFVDLTQI 307

Query: 273 EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP 332
            +   ++ +   ++Q+   +    ++  ++L     P    + D+    T  T+  C   
Sbjct: 308 TEKQQLDFDIEGQRQFLQIVPMK-QQGLDWLIVVVVP-ERDFMDQINANTRSTILLCLCA 365

Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
           F + +   +  A+     + +  S      AG L   +     ++ N++       + + 
Sbjct: 366 FALATGLGILTAHWITQPILRLGSTAKAIAAGNLDQKVSVNSTTELNSLAESFNLMAHQL 425

Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
             +  A   T +         T    EK  Q    +  +         R  +  ++    
Sbjct: 426 RESFLALARTNEELESRVTQRTTELGEKNAQLQREIRVSEAAQRG--RRQVEEALKTSEA 483

Query: 453 QLCSILEATSDGIAIINREGIILSTNRA---VSKLFGYPVEDIL-RKPFTVFLEQNTPSV 508
           +L  +  A +D + + + EG      +    +++ F Y  +     K     L +   ++
Sbjct: 484 ELRLMFAAMTDMVVVFDAEGRYQKYVQTKYVLTQSFAYKPDMDRIGKKVDEVLPKEIANL 543

Query: 509 MNHYLTEILS--------LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
           +   + + L            R+ +      S K  +       +  L   +       D
Sbjct: 544 ILDAIQQALHLREEPRNPDGSRKNVFVEYHLSNKN-RETWFLASVSPLSD-NTVLWVARD 601

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I++ K+ +  L  AK+ A+  +  KS FL+ +SHE+RTPL  I+GF++++   R     N
Sbjct: 602 ITKLKKTEAALKQAKETADAANLAKSQFLSNMSHELRTPLNIILGFTQLLLRNRS---LN 658

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
            +  EY + I+RSG  +L ++ND+L++SKIE+G++ L      L   +     +  L A 
Sbjct: 659 SQQQEYLDTINRSGEDLLTLINDVLEMSKIEAGRVILSETNFDLYGLLDRLQQMFALKAQ 718

Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---- 735
            + + +    +  IP+ I AD   ++Q+ +N+L NAI FT  G Q+ +     +      
Sbjct: 719 SRGLQLILERSPTIPQYICADESKLRQVLVNLLGNAIKFTRIG-QVTLRVETPNQNITPD 777

Query: 736 ---EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
               +   V DTG G+ + +  +  +PF Q     Q   EGTGLGLP+++  V    G  
Sbjct: 778 EPITLNFSVEDTGCGIADSDFNRLFEPFVQTEAG-QKAQEGTGLGLPISQRFVQLMGGDI 836

Query: 793 YIFSTPAKGTLIEI 806
            + ST  KG++   
Sbjct: 837 RVNSTLGKGSIFTF 850


>gi|150395865|ref|YP_001326332.1| multi-sensor signal transduction histidine kinase [Sinorhizobium
           medicae WSM419]
 gi|150027380|gb|ABR59497.1| multi-sensor signal transduction histidine kinase [Sinorhizobium
           medicae WSM419]
          Length = 772

 Score =  330 bits (847), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 114/544 (20%), Positives = 222/544 (40%), Gaps = 50/544 (9%)

Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDI 360
           Y+  +      A F E        + +     + +       + + S   +        +
Sbjct: 240 YIQAKRARDADAIFAESNLRVETALSRGRCGLWDFDLDNRRLFWSRSMYEMLGMPGDASV 299

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
              G  + L+      D+  I  V    +  +      ++  ++    + + +       
Sbjct: 300 LSFGDAARLMH----VDDRGIYRVARAIARGSERQID-QVFRMRHADGHYVWLRARAQVI 354

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
                      GI  +  +     ++      +L   +E TS+   + ++   ++  N  
Sbjct: 355 RTVSGR-THLIGIAMDVTEQHRLAQRYAEADQRLADAIECTSEAFVLWDKHDRLVMCNTH 413

Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
             + +  P   ++       +     +     +   ++   R    + +     +E+ L 
Sbjct: 414 FQQAWQLPDHVLVPGTERTIV---QAAAARPVVERRIADPDRSNHSQTSEVQLADERWLQ 470

Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH--------------------------- 573
           +     +            DI+  K+ + +L                             
Sbjct: 471 INERRTR---DGGLVSVGTDITLLKRHQVRLRESERRLMATIGDLSASRITLEQQKAELS 527

Query: 574 --------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
                    K+ AE  +  KS+FLA +SHE+RTPL AI+GFSE++++Q FGPLG+ +Y E
Sbjct: 528 VANANYQAEKERAEAANRAKSEFLANMSHELRTPLNAILGFSEILQDQMFGPLGSEKYHE 587

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           Y+  I  SG  +L+++ND+LD+SKIE+G M +  E + L   + E +    + A +K I 
Sbjct: 588 YSRDIFESGKHLLNVINDILDMSKIEAGHMRITRERIDLAPLIEETLRFTTIPAEQKNIR 647

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +    ++ +  + AD R++KQ+ LN+LSNA+ FT  GG+I +         V L + D+G
Sbjct: 648 VVQQVSSGL-TMFADRRAMKQVLLNLLSNAVKFTNEGGRISLRARKV-RGAVTLTIADSG 705

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+    L+K  +PF Q+ +       G+GLGL +++++   + G   I ST   GT+I 
Sbjct: 706 IGIPRDALQKIGQPFEQVQSQYAKSKGGSGLGLAISRSLTRLHGGSIKIHSTENVGTIIS 765

Query: 806 IIFP 809
           +  P
Sbjct: 766 VRIP 769



 Score = 48.9 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/378 (8%), Positives = 87/378 (23%), Gaps = 15/378 (3%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN--HIGDLLKRQNTW 143
            W+ D        S  + + +G      + +   D + ++H+D      +   + R +  
Sbjct: 271 LWDFDLDNRRLFWSRSMYEMLGMPGDASV-LSFGDAARLMHVDDRGIYRVARAIARGSER 329

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                         YV +   A  I + +         GI       +         D++
Sbjct: 330 QIDQVFRMRHADGHYVWLRARAQVIRTVSGR---THLIGIAMDVTEQHRLAQRYAEADQR 386

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL-RMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
            +   E       +  +   +    +      ++ + V                      
Sbjct: 387 LADAIECTSEAFVLWDKHDRLVMCNTHFQQAWQLPDHVLVPGTERTIVQAAAARPVVERR 446

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
            ++       +       ++   +      ++    S                +    L 
Sbjct: 447 IADPDRSNHSQTSEVQLADERWLQINERRTRDGGLVSVGTDITLLKRHQVRLRESERRLM 506

Query: 323 PETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
               D              L  AN ++    +     +   +  L+ +    +   N  +
Sbjct: 507 ATIGDLSASRITLEQQKAELSVANANYQAEKERAEAANRAKSEFLANMSHELRTPLNAIL 566

Query: 382 KPVMLYRSD--RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
               + +        +     ++          +  I         E             
Sbjct: 567 GFSEILQDQMFGPLGSEKYHEYSRDIFESGKHLLNVINDILDMSKIEAGHM-----RITR 621

Query: 440 TRINKRKMEIEVMQLCSI 457
            RI+   +  E ++  +I
Sbjct: 622 ERIDLAPLIEETLRFTTI 639


>gi|197295473|ref|YP_002154014.1| hybrid two-component system kinase-response regulator protein
            [Burkholderia cenocepacia J2315]
 gi|195944952|emb|CAR57564.1| hybrid two-component system kinase-response regulator protein
            [Burkholderia cenocepacia J2315]
          Length = 1380

 Score =  330 bits (847), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 135/787 (17%), Positives = 277/787 (35%), Gaps = 70/787 (8%)

Query: 34   FETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHG 93
            F+ E    +            T   Q + S   Y +     +    P +V     ID   
Sbjct: 514  FQVESGASDERAAPQPPLRVPTSPAQRNFS---YAELHQRALETYSPPSV----IIDKES 566

Query: 94   YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIE 153
             +  +S+   + + +   ++    +  V   L +D    I   L+   +   +   W  +
Sbjct: 567  NVVHLSDNAGRFLRHVGGELSSNIMTLVLPDLRLDLRTAIFRALQTGTSVEARRVKWAHD 626

Query: 154  GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
                   I++   P + +                    +   L    D+    + E  + 
Sbjct: 627  --TRVSWINMTVRPFHDK------------------VANAEFLLVVFDEVAGRMTEEDQA 666

Query: 214  HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE 273
             +S +            P   +++ ++    E  A   +  +T    L  S E      E
Sbjct: 667  ETSGQD-----------PVLAQLEQELQHSREQLATIIEQYETSVEELKASNEELQAINE 715

Query: 274  DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF 333
            +  + +    + K+   ++      +   +  R   +  A  D    +    +       
Sbjct: 716  ELRSTSEELESSKEELQSVNEELTTANAEMQARIEDTAKANDDLHNIIASSEI----ATV 771

Query: 334  FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393
            FV     +    P+   +      D       ++  L  P L+D+       L   +R  
Sbjct: 772  FVDKEIRVKRFTPNATAIFNLIDTDLGRSLFHITHALRYPTLADDVRQSFQSLRLIERE- 830

Query: 394  IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
                     I+        M  +P+  A+             +  D    +        +
Sbjct: 831  ---------IESEAGRWYLMRLLPYRTAD--DHIDGAVITLIDITDRHHAEEAARAGEQR 879

Query: 454  LCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
            L  + ++T D  I I +  G I+S N    ++FGY  E+++ +   +  E N    +   
Sbjct: 880  LRLVAQSTKDYAIIIQDGNGAIVSWNAGAERIFGYTEEEMIGQDVELIYEPNDRQALVPM 939

Query: 513  LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQ---- 566
                ++    +  +      TK+ + +    ++  +  +  + ++  + D++  KQ    
Sbjct: 940  REREVATREGRA-DDERWHRTKDGRRIFCSGVVTPISDTSFNGFAKIVRDMTLRKQSDDA 998

Query: 567  ---EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
                  +   A++ A   +  K +F+A +SHE+R PL  I   SE +  +       P  
Sbjct: 999  NREALAREQAAREQALSSNQLKDEFIAVLSHELRHPLNLIGVKSE-MLPRLPETRDIPAV 1057

Query: 624  IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
             E A+ I ++      I++DLLD+S+I++GK+ L    V L   +       +   + + 
Sbjct: 1058 REAADSIRQAVRAQAQIIDDLLDLSRIQTGKLALELGRVDLTAMLRGIADTCERDVHARG 1117

Query: 684  ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
            ++++T         LAD    +QI  N++SNA+ FT S G+I++   H     + + V D
Sbjct: 1118 LVLKTELPTEPAIALADPVRCEQIFWNLMSNALKFTQSHGEIVVRLAHE-GRMLRVDVID 1176

Query: 744  TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGT 802
             G G+    L      F Q P  +     G G+GL L + +V+ + G+    S    +GT
Sbjct: 1177 DGQGIDGDTLPHVFDMFRQAPRDRTR--GGLGIGLALVRQLVEMHGGRIAAASDGQGRGT 1234

Query: 803  LIEIIFP 809
             + +  P
Sbjct: 1235 TMTVWLP 1241


>gi|218779276|ref|YP_002430594.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfatibacillum alkenivorans AK-01]
 gi|218760660|gb|ACL03126.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfatibacillum alkenivorans AK-01]
          Length = 589

 Score =  330 bits (847), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 76/363 (20%), Positives = 159/363 (43%), Gaps = 26/363 (7%)

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
            +  Q+ ++L +  +G+  ++    I+S N+A  ++          K     +       
Sbjct: 248 RQKNQMEAVLASMVEGVIALDTGQRIISMNQAAGRMLSCDPRTAAGKTIQETVRNTDFHD 307

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQ 566
                  +++      +E+  + S K E+   +R +  +   +      + ++D+++  +
Sbjct: 308 FV-----LMAFRSESPVEEELVLSGKHERYFKVRGMTLRDAQAQRMGALVVLNDMTQVTK 362

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
            +              + + DF+A VSHEI+TP+TAI GF E + +             +
Sbjct: 363 LE--------------NMRRDFVANVSHEIKTPITAIKGFVETLLDGALD--DKENAKRF 406

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIE-SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
              I R  + +  IV DLL++S+IE +G   L  E  S+ EA+  A+ + +  A  + I 
Sbjct: 407 LEIISRHTDRLKAIVEDLLELSRIEQAGGRELPLERASVKEALETAVQVCEARAISENIT 466

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +     +++  +  D   ++Q  +N+L NA+ ++   G + +        EV++ V D G
Sbjct: 467 VEMDCPDDLTAVF-DPTMIEQAVVNLLDNAVKYSEEHGVVRVGAKAE-GGEVLIWVEDEG 524

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
            G++   L +  + F ++  ++     GTGLGL + K ++ A+ G   + S   KG    
Sbjct: 525 PGISEEHLPRLFERFYRVDKARSRNLGGTGLGLAIVKHIMAAHGGHVSVKSEKGKGAAFT 584

Query: 806 IIF 808
           +  
Sbjct: 585 LHL 587


>gi|119473025|ref|ZP_01614847.1| Signal transduction histidine kinase [Alteromonadales bacterium
           TW-7]
 gi|119444603|gb|EAW25915.1| Signal transduction histidine kinase [Alteromonadales bacterium
           TW-7]
          Length = 806

 Score =  330 bits (847), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 113/541 (20%), Positives = 204/541 (37%), Gaps = 30/541 (5%)

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLT 352
              +                F   +    + VD  P+   + S   G+  + N  F  +T
Sbjct: 147 EIAQKQISTEASEKQRFKQAFLGEKEKFEKFVDLAPVGIAINSISDGSFEFVNEEFGRIT 206

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
            Y SVD++            P+  +    + + L                      +   
Sbjct: 207 GY-SVDELNQMDYWQ---LTPEKYEKQEHEQLELLAKYGQYGPYQKE---YIHKNGHVYP 259

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM-------QLCSILEATSDGI 465
           +     +  +   E      +  +    + ++++++           ++    ++   G+
Sbjct: 260 VLLSGIKITDSKGETF-IWSVVQDISHQKQSEQQIKTAKEKVDSFALRMQLANDSAGIGV 318

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
             ++ +   L  +  + KL+G    +     + +   +  +        L E ++     
Sbjct: 319 WELDLKTEKLVWDSWMYKLYGISELEFSCTYQAWLDRVHVDDVEHNERMLDEAINGVGIY 378

Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEKE 581
             E   +      + +     I +    +        +D++E      KL  AK  AE  
Sbjct: 379 DPEFRVVHPDGNIRTIKASAEILRDSHGAAIKVVGVNYDVTEKVDAIRKLFDAKLAAENA 438

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
           +  KSDFLA +SHEIRTP+ AI+G  +++KN                    SG  +L I+
Sbjct: 439 AQSKSDFLANMSHEIRTPMNAILGGLQLLKNTSL----PEELRAVLKNASYSGQSLLTII 494

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-AD 700
           ND+LD SKIES ++ L     SL E +      +    +EKRI    +   +       D
Sbjct: 495 NDILDYSKIESNQLQLEKASFSLSEVLDSITYDLDSLVSEKRIGFTVNKDESYYEYWVGD 554

Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTT---HTSNEEVILRVRDTGVGMTNYELEKAM 757
           L  VKQI LN+ SNA+ FT  G  + I+ +   +   E + L V D+G+GM+    E   
Sbjct: 555 LVRVKQILLNLSSNAVKFTDKGS-VKINASSKIYEGKEAIYLEVVDSGIGMSKEVTEHIF 613

Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
           + F Q  +S   +  GTGLG+ +  ++V    G+  I S    GT + I  PL   ++  
Sbjct: 614 ERFTQADSSTTRKYGGTGLGMSITISLVKMMGGEIDIQSKQGLGTTVTIKLPLPKANNIA 673

Query: 818 D 818
           D
Sbjct: 674 D 674



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 22/165 (13%), Positives = 51/165 (30%), Gaps = 10/165 (6%)

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVE- 490
           +E E+   +    ++  E  +   I +A++D  ++I+   G  +  N+A   + G     
Sbjct: 8   LEQENTKLKRAIAELTYERDKYKKIFDASADAYSVIDLSSGKFIECNQAAIDMHGVNSMG 67

Query: 491 ---DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL--SLRIII 545
              ++     +  L+             I     +       + S  +       + +  
Sbjct: 68  NFLNLSPADLSPELQPCGNRSDALAKAHINCAIEQGFHSFKWIHSRLDGTTFNCLVSLTG 127

Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
             +  S        DIS+    +         A ++   K  FL 
Sbjct: 128 LFIEGSQLILAVGRDISD---IEIAQKQISTEASEKQRFKQAFLG 169



 Score = 46.2 bits (108), Expect = 0.024,   Method: Composition-based stats.
 Identities = 15/118 (12%), Positives = 34/118 (28%), Gaps = 6/118 (5%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR-QNTWYGKTTLW 150
            G  + ++EE  +  G    ++  M    ++   +    +   +LL +       +    
Sbjct: 192 DGSFEFVNEEFGRITGYSVDELNQMDYWQLTPEKYEKQEHEQLELLAKYGQYGPYQKEYI 251

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
              G     P+ L+ + I     E      + +V             K   +K     
Sbjct: 252 HKNGHVY--PVLLSGIKITDSKGE---TFIWSVVQDISHQKQSEQQIKTAKEKVDSFA 304


>gi|70730352|ref|YP_260091.1| sensory box sensor histidine kinase/response regulator [Pseudomonas
           fluorescens Pf-5]
 gi|68344651|gb|AAY92257.1| sensory box sensor histidine kinase/response regulator [Pseudomonas
           fluorescens Pf-5]
          Length = 1059

 Score =  330 bits (847), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 104/517 (20%), Positives = 199/517 (38%), Gaps = 32/517 (6%)

Query: 323 PETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
              V     P F+      +  N     + +  S              DA +       +
Sbjct: 195 SGVVLAASSPAFILKSDRAWPWNRFTGEIRRQFSDYRFANGVPERLPFDAHQSVIQLDGR 254

Query: 383 PVMLYRSD-----RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
              L R D      +       L  +         +                      + 
Sbjct: 255 RYSLSRVDFDWNDPSGPWTLITLGDLDTLLPGEQVLLIEGLSALVFLLLLWGGLRRLADA 314

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR--- 494
              + +  ++E    +L   L++ + G+   N     +  N    ++ GY  + + +   
Sbjct: 315 RRHKRDVAQIEQSEQRLDMALQSGALGLWDWNLSLGTVINNDVWLQILGYSKQQMEQAFG 374

Query: 495 ---KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR-----IIIK 546
              + +T  +  +    +   L   L+ ++ +          KE + L +      +   
Sbjct: 375 HGLERWTALVHPDDYEPVMARLKAHLNDEVGE-YRAEYRMRNKEGQWLWVLDIGKIMQRD 433

Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
                +  +  + DISE K  + ++  +++ AE+ +  KS+FL  +SHEIRTPL AIIG 
Sbjct: 434 ASGAPARVTGVLQDISERKAVEAQIQQSRQDAERATQAKSEFLDCMSHEIRTPLNAIIGM 493

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
           + +  +    P+      +Y   IDR+   ++  +N +LD+SKIE+GK+++      L E
Sbjct: 494 AHLALDLPLEPV----QRDYIEKIDRAAKHLVGTINGVLDLSKIEAGKLSMEQVGFDLRE 549

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQ- 724
            V + + LV+  A EK + ++     ++P R + D   + Q+  N++ NAI FT +G   
Sbjct: 550 LVDDVLLLVRQRAEEKALRLQLDIPASLPHRYVGDPLRLAQVLTNLVDNAIKFTEAGHVC 609

Query: 725 --IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
             + +         +   V DTGVG+++ +  +    F Q   S   R  G+GLGL ++K
Sbjct: 610 IGVYLVRQWDHQALLCFSVTDTGVGISDEQQARLFNVFVQADRSISRRYGGSGLGLTISK 669

Query: 783 AMVDANMGKFYIFSTPAKGTLIEII-------FPLYD 812
            +V    G   + S P +G   +          PL +
Sbjct: 670 KIVQLMQGDIRVKSQPGQGATFKFSVQLSLPPLPLEE 706


>gi|300856171|ref|YP_003781155.1| putative sensor histidine kinase/response regulator hybrid
           [Clostridium ljungdahlii DSM 13528]
 gi|300436286|gb|ADK16053.1| putative sensor histidine kinase/response regulator hybrid
           [Clostridium ljungdahlii DSM 13528]
          Length = 949

 Score =  330 bits (847), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 90/356 (25%), Positives = 167/356 (46%), Gaps = 10/356 (2%)

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           +L  +   I  ++      + N A +  FG    D+  +      + +T + ++    E+
Sbjct: 197 LLNNSESQIWALSNVTSYAAVNEAHASFFGKKKSDLEYQDLYDIFDIDTANKLSASNWEL 256

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHA 574
              +     E        E +LL ++   +K    +      T  DI+E +  + +L  A
Sbjct: 257 FQKNESAKKEIEVRNFKGENRLLQIKSKPQKDKTGNIKYLICTAEDITEQRLAERELYKA 316

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
           K+ AE  +  KS FLA +SHEIRTP+  I GF +++++            ++      + 
Sbjct: 317 KEQAEAANIAKSQFLANMSHEIRTPMNGIFGFLDLLQSTNLSL----EQKDFIREAKSAS 372

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
            ++L I+ND+LD SKIE+ K+ +     +L   + +A+SL+   A EK + + T  +  +
Sbjct: 373 KVLLYIINDILDFSKIEAKKLTMEKIRFNLRNTIEDAVSLLVPKAVEKGLELYTMISEGV 432

Query: 695 PR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVI--LRVRDTGVGMTN 750
           P  ++ D   ++QI  N++SNA+ FT  G   + +      NE  +    V+DTG+G+  
Sbjct: 433 PEEVVGDPSRLRQILNNLISNAVKFTNKGEISVTVDCLKEENETAVLNFEVKDTGIGIRK 492

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
             ++   K F Q   S   +  GTGLGL ++  +V    G+ ++ S   KG++ + 
Sbjct: 493 DHIDNIFKSFSQADTSTTRKYGGTGLGLAISSELVKMMGGEIHVESIFGKGSIFKF 548


>gi|256829206|ref|YP_003157934.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256578382|gb|ACU89518.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 1050

 Score =  330 bits (847), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 105/523 (20%), Positives = 191/523 (36%), Gaps = 48/523 (9%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVD-------D 359
                   + E       D                 +ANP+   +  Y   +       D
Sbjct: 382 RRAQVQITDSEKRYKALFDANSDGILAADSVTRRFVFANPAVCRMFGYSEEEFRGLKVDD 441

Query: 360 IEIAGGLSTL---LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
           I     L  +    +A  L   +  + +     D +   A  R   ++ N  +       
Sbjct: 442 IHPQENLEEVLGNFNAQALGQTDVAEALPCLHRDGSVFTADIRSFLLKINGTSC------ 495

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476
                          G+  +  +       +     +L   +  ++DGI   +R    + 
Sbjct: 496 -------------AVGLFRDVTERSQILDALRQTQERLALAIAGSNDGIWDWDRVADQVY 542

Query: 477 TNRAVSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
            +    ++ GY   ++    + +   +       +     +  S D    +        K
Sbjct: 543 FSPRWKEIIGYEDHELRNDLEEWRSRIHPEDRERVLAVNNQFFSSDASHFV-IEYRLRHK 601

Query: 535 EEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
           +     +      L          + +  DI+E K  + +L   +  A   S  KS FLA
Sbjct: 602 DGTYRWIMGRGTCLRDDEGVPCRMAGSHADITERKAMELELVGVRDAALAASVAKSAFLA 661

Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650
            +SHEIRTPL  I+G  +++               Y    D SG  +  +++D+LDIS+I
Sbjct: 662 NMSHEIRTPLNGIMGMLQLL----DSSSLTEEQKNYVRMADVSGRRLTALLSDILDISRI 717

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIAL 709
           E+GK+ L      L+E  +  I+L  + A EK I +    A ++P  ++ D   ++QI  
Sbjct: 718 EAGKLLLTERAFDLEEMRTSIITLFSIPAQEKGISLVVELAPDLPPRLIGDDLRLRQILF 777

Query: 710 NILSNAIHFTPSG---GQIIISTTHTSNE-EVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           N++ NA+ FT  G    QI + ++   N   ++  V+D+G G+++  L    +PF Q   
Sbjct: 778 NLVGNAVKFTNEGFVQTQISLLSSQADNGCRLLFSVQDSGEGISDTLLPAIFEPFVQGEG 837

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           S     +G GLGL +   ++    G   I S+   GT I    
Sbjct: 838 SYVRYHQGAGLGLAIVGRLMRMMGGSLAIDSS-DSGTTICFSL 879



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/332 (9%), Positives = 83/332 (25%), Gaps = 26/332 (7%)

Query: 94  YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT-LWPI 152
                +  + +  G    +  G+++ D+    +++      +      T   +       
Sbjct: 415 RFVFANPAVCRMFGYSEEEFRGLKVDDIHPQENLEEVLGNFNAQALGQTDVAEALPCLHR 474

Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND-PRALGKRLDKKFSHLHEIK 211
           +G+     I    L I   +         G+       +    AL +  ++    +    
Sbjct: 475 DGSVFTADIRSFLLKINGTSCAV------GLFRDVTERSQILDALRQTQERLALAIAGSN 528

Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY------AHKDDVLKTEKYPLLTSE 265
            G    ++    ++        +  ++                   + +        +S+
Sbjct: 529 DGIWDWDRVADQVYFSPRWKEIIGYEDHELRNDLEEWRSRIHPEDRERVLAVNNQFFSSD 588

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
            S    +      +            L+++              +     +       + 
Sbjct: 589 ASHFVIEYRLRHKDGTYRWIMGRGTCLRDDEGVPCRMAGSHADITERKAMELELVGVRDA 648

Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
                +            A  +FL    ++    +    G+  LLD+  L++       M
Sbjct: 649 ALAASV------------AKSAFLANMSHEIRTPLNGIMGMLQLLDSSSLTEEQKNYVRM 696

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
              S R   A  + +  I       L +T   
Sbjct: 697 ADVSGRRLTALLSDILDISRIEAGKLLLTERA 728


>gi|301299923|ref|ZP_07206154.1| PAS domain S-box protein [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300852468|gb|EFK80121.1| PAS domain S-box protein [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 627

 Score =  330 bits (847), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 85/399 (21%), Positives = 167/399 (41%), Gaps = 36/399 (9%)

Query: 423 QFPENMPQNGIEPEDVDTRINKRKM-EIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
              E                  +++ E E  +L S+L   SDG+   +R G I   N   
Sbjct: 240 GNDELGQLAQAVNNLSIRVEETQELSESERRRLDSVLSHMSDGVIATDRRGGITIVNDMA 299

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
                    ++L K     L+      +   L +   + L  + EK  + +         
Sbjct: 300 MNYLDISEGEVLGKSILDILDIRNQYTLRDLLEKQDEVVLDISGEKDLILNA------YF 353

Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
            +I ++  F S     +HD++E ++                  +  F++ VSHE+RTPLT
Sbjct: 354 SVIQRESGFISGIVCVLHDVTEQQKI--------------DRERKQFVSNVSHELRTPLT 399

Query: 602 AIIGFSEVIKNQRFGPLGNPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
           ++  + E + +   G   + +   E+        + ++ ++NDLL +S+++SG + L  E
Sbjct: 400 SMRSYIEALND---GAWRDEKVAPEFLKVTQDETDRMIRMINDLLSLSRMDSGTVKLDLE 456

Query: 661 PVSLDEAVSEAISLVQLYANEKRI----------LIRTSFANNIPRILADLRSVKQIALN 710
            V+++  V+  +    +   + +I           I+ +F      +  D     Q+  N
Sbjct: 457 LVNINGLVNYILDRFDMMLKKDKIDTRDIKTKNYTIKRNFTKRDLWVELDTDKFIQVVDN 516

Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           I++NAI ++P GG I       ++  VIL + D G+G+   +L      F ++  ++   
Sbjct: 517 IMNNAIKYSPDGGVITCRL-LETHNNVILSISDQGLGIPKKDLGHVFDRFFRVDKARSRA 575

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             GTGLGL ++K +++ + G+ ++ S   KG+   I  P
Sbjct: 576 QGGTGLGLAISKEVIELHHGRIWVDSVEGKGSTFYISLP 614


>gi|302877991|ref|YP_003846555.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
           ES-2]
 gi|302580780|gb|ADL54791.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
           ES-2]
          Length = 1407

 Score =  330 bits (847), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 117/597 (19%), Positives = 228/597 (38%), Gaps = 54/597 (9%)

Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
             +      L    + +L   ++       +   K     L +  ++S  +         
Sbjct: 321 QTISANYPGLFGEVKEALLSMQEVARALEQRRWAKDEITNLISAIQQSRSH--------- 371

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEI-AGGLSTLL 370
           S + +   +    TV       +V +  +L   +     + +      IE  A     + 
Sbjct: 372 SEFGEALLSHLCPTVHAVQGCLYVQTEESLSPVSAYGARIDQINPSGLIEQCAQDQKMIA 431

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI---------QWNRENSLAMTFIPFEKA 421
                +  +    +    +    +    +   I           +   SL ++ +P   A
Sbjct: 432 IEDPEARLHLSGLLSARTAHVVILPLVLQNRAIGIIELSLLSPPDAHCSLLLSELPQMLA 491

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL--------------CSILEATSD-GIA 466
                       +  ++      ++++ +  +L                IL A ++  I 
Sbjct: 492 PVLEVLRRNLRTQHLNMMLAAQTKELDAQRRELLNTHEATGKVNAMLQDILAAATEIAII 551

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
             +  G+I   N   +K+ G+  ++++         +           ++ S        
Sbjct: 552 GTDVNGLITLFNTGANKMLGWIADEVVGLQTPACFHREDELAAACRTADVSSSFGAIVAG 611

Query: 527 --------KITLGSTKEEKLL----SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA 574
                   +       +            +       S Y   + DIS  ++ +  L +A
Sbjct: 612 AVMNGHDSREWTFVRHDGTEFIGLLLTSAVYSMDSVISGYLCVIQDISGRRETEQNLINA 671

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
           + +AE+ S  KSDFLA +SHEIRTP+  IIG S +  N    P    R  +Y   I +SG
Sbjct: 672 RTLAEETSRMKSDFLANMSHEIRTPMNGIIGMSHLALNTDLTP----RQRDYLKKIQQSG 727

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
             +L I+ND+LDISKIE+GK+++      L+  +++ ++L+     EK + +    A+++
Sbjct: 728 QNLLRIINDILDISKIEAGKLSIEHSEFELENTLADVVALIGEKTTEKGLELILDIASDV 787

Query: 695 P-RILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVI--LRVRDTGVGMTN 750
           P  +L D   + Q+ LN  SNA+ FT  G  +I +     S ++V+    VRDTG+G+++
Sbjct: 788 PVNLLGDSLRLGQVLLNYASNALKFTEQGEIVIAVRLRERSEDQVLLYFEVRDTGIGLSS 847

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
            ++ +   PF Q   S   R  GTGLGL + + + D   G+  + S   +G+     
Sbjct: 848 EQISRLFTPFTQGDASTTRRYGGTGLGLAICRQLADLMGGEAGVNSVEGQGSTFWFT 904


>gi|303242336|ref|ZP_07328821.1| multi-sensor hybrid histidine kinase [Acetivibrio cellulolyticus
           CD2]
 gi|302590099|gb|EFL59862.1| multi-sensor hybrid histidine kinase [Acetivibrio cellulolyticus
           CD2]
          Length = 917

 Score =  330 bits (847), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 106/502 (21%), Positives = 204/502 (40%), Gaps = 21/502 (4%)

Query: 322 TPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
             +  +       V    G + Y N     +  ++  D I  A     +    +    N 
Sbjct: 164 AHDVFENTVDGIVVTGPEGEILYLNKFAEQIIGWEQKDVIGKA--FEEIFHLFEGDPCNK 221

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
               +    +   +   A+   +    +  + ++       ++  +      +  +    
Sbjct: 222 APNPVKKAIETRKVVGLAKNTLLLTKNKEYIYLSAGISTIQDRDEKVKAVVIVFRDISRL 281

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAII-----NREGIILSTNRAVSKLFGYPVEDILRK 495
           R  +  +E    +  ++   T D I +      N  G I+  N A  +  G+  E++L  
Sbjct: 282 RRREINVEENERKYRALFNNTLDAIFVSLVMPDNELGKIIEVNDAACRWTGFSREELLNM 341

Query: 496 PFTVFLE----QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
             T  ++    +++       +   +       ++K        +      I    L   
Sbjct: 342 EITDLMKVLKVESSSYSNTGMVNYAMINAEAGVIKKNQGILDNNKVYFESSIHYFTLNNQ 401

Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
                  HD++ ++  + ++  AKKIAE+ +  KS FLA +SHEIRTPL  IIG S+++ 
Sbjct: 402 KIALSINHDVTSFRVAQEQMLQAKKIAEEANKTKSIFLANMSHEIRTPLNGIIGMSDLML 461

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
             +  P       E    I      +L ++N++LD SKIE+ K+ +      L E + E+
Sbjct: 462 RVKMTP---EEQRETTKTIISCSQNLLHLLNNILDFSKIEAEKVEISSNVFDLKEIIGES 518

Query: 672 ISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIST- 729
           I++ ++ A EK + I   F + +  +   D   ++QI  N+++NAI FT  G +I +   
Sbjct: 519 INMYKIRAKEKSLDISAGFQDGLENLWIGDKVKIQQILNNLINNAIKFTIEG-RINVLVN 577

Query: 730 THTSNE---EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
               +    E+   V DTG+G+ + +L K    F Q+  S   +  GTGLGL ++K +V+
Sbjct: 578 KLNDDGSCCELQFTVSDTGIGIEDKDLNKLFVAFSQVDGSYTRQFGGTGLGLSISKKLVE 637

Query: 787 ANMGKFYIFSTPAKGTLIEIIF 808
              G+ ++ ST   G+      
Sbjct: 638 LMGGRIWVESTMGVGSRFNFTL 659



 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/134 (10%), Positives = 37/134 (27%), Gaps = 6/134 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP----NNHIGDLLKRQNTWY 144
               G +  +++   + IG     +IG    ++  +   DP     N +   ++ +    
Sbjct: 178 TGPEGEILYLNKFAEQIIGWEQKDVIGKAFEEIFHLFEGDPCNKAPNPVKKAIETRKVVG 237

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
                  +     Y+ +      I  R+ +        +              +  ++K+
Sbjct: 238 LAKNTLLLTKNKEYIYLSAGISTIQDRDEKVKAV--VIVFRDISRLRRREINVEENERKY 295

Query: 205 SHLHEIKKGHSSVE 218
             L         V 
Sbjct: 296 RALFNNTLDAIFVS 309


>gi|303248510|ref|ZP_07334768.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
 gi|302490130|gb|EFL50050.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
          Length = 1066

 Score =  330 bits (847), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 107/642 (16%), Positives = 224/642 (34%), Gaps = 33/642 (5%)

Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253
                R D  F             ++++      +         +  + L    A +  +
Sbjct: 287 EMRLARTDGHFRLTVADDGPGIPDDQKQVVFERFRQLDSGENRSHGGTGLGLAIAKEFAL 346

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
           L      L T+                   T        +                + + 
Sbjct: 347 LHGGDVTLTTNPAGGAVFTVTLPVAAPAGVTVHDAPDDGRPEPSPPIPAAPADAITASAR 406

Query: 314 YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
             +E   +    V +       Y    L     +   +   + +     A     ++   
Sbjct: 407 PSEERAGMPLVLVIEDNADMRDYLLDILGGRYRTLAAVNGREGLAA-AKARHPDLIVSDV 465

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
            +   +  + V   R D         + T + +      +     +     P +  +   
Sbjct: 466 MMPVLSGTEMVRELRRDPALDKVPVVMLTAKADDTLRRRLIAERVQDYLVKPFDAEELLA 525

Query: 434 E--PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
                  DT  + + +     +  +  E  + GIA++  +G  L  N  +  + GYP E 
Sbjct: 526 RIGRLLADTGRHAQDLGASERRFQATFELAAVGIALVGPDGRWLRVNNKLCDILGYPCEA 585

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
           +L   F      +        + ++L+     T  +      K+   + + + +  +  +
Sbjct: 586 LLGMTFQQITHPDDLDADMGKVRQVLA-GNLNTYNREKRYIRKDGSFVWVNLTVALVRDA 644

Query: 552 SC----YSLTMHDISEWKQEKNKLSHAKKIAEKESS--------------HKSDFLARVS 593
           +     +   + DI   K+ +  L  ++    + +                KS FLA +S
Sbjct: 645 AGQPDYFISVIEDIDRRKRAEEALLRSRDELARAAEQAKQLASRAEAASLAKSSFLANMS 704

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HEIRTPL  ++G  +++K        +   ++YA+   RSG  +  ++ D+LD+S+IE+ 
Sbjct: 705 HEIRTPLNGLMGMMQLLKTTAL----DDEQLQYADMAIRSGGRLTRLLGDILDLSRIEAA 760

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNIL 712
           ++ LH  P SL +  +         A EK + +      ++PR ++ D   ++QI  N+ 
Sbjct: 761 RLTLHVAPFSLADVFAAITETFAPLALEKGLPLVCLANPDLPRNVIGDETRLRQILFNLA 820

Query: 713 SNAIHFTPSGGQIII---STTHTSNEEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
            NA+ FT +G ++ +   S     +        V DTGVG+ + +L+   + F Q+ ++ 
Sbjct: 821 GNAMKFTVAG-EVRVEGWSLLPLPDGRARLLFAVSDTGVGIPDDKLDAVGEAFTQVESTY 879

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
               +G GLGL + + +     G   I S    GT + ++ P
Sbjct: 880 TRDQQGAGLGLAICRELTRLMGGSLTIESELGVGTTVWLMLP 921



 Score =  241 bits (616), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 64/252 (25%), Positives = 117/252 (46%), Gaps = 5/252 (1%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
             +    +++   +   +  + K++F A VSHE+RTPLT I+G    +  +       P 
Sbjct: 128 RLRGANEEITRLYEQTRELDALKTNFFANVSHELRTPLTLILGS---LAKRLGAAETPPE 184

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                  ++R+  L+L  V DLLD++++++G+M L +    +        S  +  A E+
Sbjct: 185 ARRDYRVMERNAKLLLAHVTDLLDVARLDAGRMELRYARCDMARQARFMASCFESLARER 244

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
            I +       +     D+  V++I  N+LSNA  FTP GG++ +    T      L V 
Sbjct: 245 GISLTVDAPRAL-TAEVDVEKVRRILQNLLSNAFKFTPDGGRVEMRLARTD-GHFRLTVA 302

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G G+ + + +   + F Q+ + +     GTGLGL +AK     + G   + + PA G 
Sbjct: 303 DDGPGIPDDQKQVVFERFRQLDSGENRSHGGTGLGLAIAKEFALLHGGDVTLTTNPAGGA 362

Query: 803 LIEIIFPLYDTS 814
           +  +  P+   +
Sbjct: 363 VFTVTLPVAAPA 374



 Score = 88.5 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 28/227 (12%), Positives = 70/227 (30%), Gaps = 14/227 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQ-NTWYGK 146
           +   G    ++ +L   +G     ++GM    ++    +D +   +  +L    NT+  +
Sbjct: 562 VGPDGRWLRVNNKLCDILGYPCEALLGMTFQQITHPDDLDADMGKVRQVLAGNLNTYNRE 621

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                 +G+  +V ++L    +     +   F    ++              R   + + 
Sbjct: 622 KRYIRKDGS--FVWVNLTVALVRDAAGQPDYF--ISVIEDIDRRKRAEEALLRSRDELAR 677

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS------LTEYYAHKDDVLKTEKYP 260
             E  K  +S  +      S         ++  ++       L +  A  D+ L+     
Sbjct: 678 AAEQAKQLASRAEAASLAKSSFLANMSHEIRTPLNGLMGMMQLLKTTALDDEQLQYADMA 737

Query: 261 LLTSEE--SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
           + +       L +  D   I   + T      +L +      E  + 
Sbjct: 738 IRSGGRLTRLLGDILDLSRIEAARLTLHVAPFSLADVFAAITETFAP 784


>gi|239905687|ref|YP_002952426.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239795551|dbj|BAH74540.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 705

 Score =  330 bits (847), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 102/498 (20%), Positives = 211/498 (42%), Gaps = 25/498 (5%)

Query: 334 FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD-NNAIKPVMLYRSDRT 392
           +    G   + +PS   +T Y   D +     +  ++        ++ I  +        
Sbjct: 67  WRGLDGKYIWVSPSCERITGYTPNDFLSGRISIKKIIHYKDAILWDSHINEMNCSNFQSP 126

Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
            I    R++ ++      + ++       N     + + G   +  + +  +  ++    
Sbjct: 127 HIEIEFRINNLK---GEIVWISHTCKAIYNSAGICLGRRGCNRDITEKKFVEISLKKNQA 183

Query: 453 QLC-------SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            L        +IL  ++  I ++ ++ +I   N    ++FGY  ++++     +      
Sbjct: 184 ILEKHLLWKENILNTSAVAILVVVKDRVIADANIGFEEMFGYSKKELIGHSVRMLHVDGE 243

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII---IKKLPFSSCYSLTMHDIS 562
                  +         + ++       K+  ++   +    I     S        +I+
Sbjct: 244 LFEQYGKINW-SQTSTTKVVKCEWKLKKKDGSIIICEVSGSAINPHDLSEGVIWIATNIT 302

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E K+ +++L  +KKIA+  +  KS+FLA +SHEIRTPL  I+G  +++++ +     N +
Sbjct: 303 EKKKFESELISSKKIADAANKAKSEFLANMSHEIRTPLNGILGMLQLLESTQ----TNHQ 358

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             EY +    SG  +  +++ +LD+S+IE G   L     ++   + + ++      + K
Sbjct: 359 QSEYIDIALNSGRNLNKLISGILDLSRIEQGNTTLESHGFNIKHLIDDIVNTFITELSSK 418

Query: 683 RILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EVI 738
           ++LI T+ A  +P +   D   ++QI  NI+ N+I FTP G  + IS    ++     V 
Sbjct: 419 KLLITTTIAKIMPDVIYGDSGRLRQIIFNIVGNSIKFTPFGS-VAISIDSLTSGNTIHVF 477

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           + + DTG+G+   +L+    PF Q+  S   +  G GLGL + K  + A  G   + S  
Sbjct: 478 IEISDTGIGIPEDKLDDIFYPFTQLDGSLTRKYGGVGLGLSIVKKQLLAMEGSITVESNE 537

Query: 799 AKGTLIEIIFPLYDTSHP 816
           + GT   I  P + T+ P
Sbjct: 538 SGGTKTCIAIP-FKTNEP 554


>gi|331019216|gb|EGH99272.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 775

 Score =  330 bits (847), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 130/608 (21%), Positives = 237/608 (38%), Gaps = 30/608 (4%)

Query: 222 YDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTI--N 279
            +  + Q+     R+      +   +    +   + +  LLT +E  LP   +   +   
Sbjct: 39  AERQTAQAEEDVRRVLLVQGDIQTLHTQIAEGAASVRGYLLTHQEDFLPGYINAQPLINA 98

Query: 280 LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP--FFVYS 337
                             +S E L       L      G                     
Sbjct: 99  ALVRLDANIRDQQMREHLKSIEPLIRTKVDGLERLRSMGREDHENVAAILVENKYVLDQL 158

Query: 338 HGNLFYANPSFLLLTKYKSVDDIEIAGGL--STLLDAPKLSDNNAIKPVMLYRSDRTCIA 395
              +         L   ++         L  STLL A        +  +ML +       
Sbjct: 159 RERIGVMREREDALLAERTEAAAATRERLLWSTLLAAACGIFGAILAVLMLSKG------ 212

Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
             AR+H +Q N +       +  +   +         +          +R +     +L 
Sbjct: 213 IVARVHQVQRNAQRLALGHPLLPQPPEKDEIGQLGTRLVEAGQLLAERERALRDNEERLR 272

Query: 456 SILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
            I+E   D GI  ++R G + + N    ++ GY  ++I+ + F+VF              
Sbjct: 273 LIIEGVKDYGIFALDRNGYVTTWNAGAERIKGYTEQEIIGQHFSVFYLPQECPQHPDM-- 330

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNK 570
            +    +     + +    K+       ++I     S      +S    DIS+ +  +  
Sbjct: 331 ALHEATVNGRYTEESWRRRKDGSRFWASVVITAQYDSNDELRGFSKITRDISDRRVAEIA 390

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           L  A++ AE+ S  KS+FL+R+SHE+RTPL +I+GF++++                  +I
Sbjct: 391 LGTAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLL-----DMDSPASQRPQVGHI 445

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT-- 688
            R+G  +L ++N++LDI++IE+G ++L  EPVSL   + E + LV   A +  I ++   
Sbjct: 446 LRAGQHLLKLINEVLDIARIEAGHVSLSLEPVSLSSVLKETLVLVSPMAADGNIELKELP 505

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748
              + +  ++AD + + Q+ LN+LSNAI +    GQ+ I    ++   V + V DTG G+
Sbjct: 506 HLPDELG-VIADRQRLVQVLLNLLSNAIKYNRPDGQVRIEVDRSAE-HVTVSVVDTGYGI 563

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
               L +  KPF ++        EGTGLGL L+K+M++   G   + +T  +G    +  
Sbjct: 564 APERLGQLFKPFERLDA--NPSVEGTGLGLALSKSMLEMMKGTLSVQTTQNEGCRFTLAL 621

Query: 809 PLYDTSHP 816
           P      P
Sbjct: 622 PFVAVHAP 629



 Score = 51.2 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 24/265 (9%), Positives = 69/265 (26%), Gaps = 20/265 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH--IDPNNHIGDLLKRQNTW 143
            + +D +GY+   +    +  G    ++IG               P+  + +       +
Sbjct: 283 IFALDRNGYVTTWNAGAERIKGYTEQEIIGQHFSVFYLPQECPQHPDMALHEATVNGR-Y 341

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGF---------RGFGIVHVNRVDNDPR 194
             ++     +G+  +  + + A   Y  N E  GF         R    + +     +  
Sbjct: 342 TEESWRRRKDGSRFWASVVITAQ--YDSNDELRGFSKITRDISDRRVAEIALGTAREEAE 399

Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254
              +   +  S +    +   +       +    SP         +    ++      + 
Sbjct: 400 RASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSPASQRPQVGHILRAGQHLLKL--IN 457

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
           +      + +   SL  +    +  L +         +  +     + L H         
Sbjct: 458 EVLDIARIEAGHVSLSLEPVSLSSVLKETLV--LVSPMAADGNIELKELPHLPDE--LGV 513

Query: 315 FDEGENLTPETVDKCPIPFFVYSHG 339
             + + L    ++            
Sbjct: 514 IADRQRLVQVLLNLLSNAIKYNRPD 538


>gi|126724717|ref|ZP_01740560.1| sensory box sensor histidine kinase/response regulator
           [Rhodobacterales bacterium HTCC2150]
 gi|126705881|gb|EBA04971.1| sensory box sensor histidine kinase/response regulator
           [Rhodobacterales bacterium HTCC2150]
          Length = 784

 Score =  330 bits (846), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 110/442 (24%), Positives = 198/442 (44%), Gaps = 21/442 (4%)

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
           A+  ++L  ++   +                L + FI F    Q      ++ I  E   
Sbjct: 184 AVSMLVLDAANGGWLDRRFWFDAFSSTLLIYLIILFIKFTHGYQQRRQRFEHAIILERRQ 243

Query: 440 TRINKRKMEIEVMQLC---SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
           T I    +  +        ++ E+ +D + I N +  I   N   +K  GY   + + + 
Sbjct: 244 TEIANETLRKKQRHFRWLAAVAESANDSVIISNTDNRIEWVNDTFTKTTGYSFTEAIGRI 303

Query: 497 FTVFL--EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC- 553
               L   + + S  +  +  I   +  + +    +  TK  + + +   I  +   +  
Sbjct: 304 PGELLNGPETSKSANSKIIDAI---NKLEPVRTEIVNYTKSGQKIWVETSISPIFDDTGE 360

Query: 554 ---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
              +     DIS  KQ +  L+ A+  AE+ ++ KS FLA +SHEIRTP+  +IG ++++
Sbjct: 361 LTMFVGIERDISLIKQREVDLALARSEAEQAAAAKSAFLATISHEIRTPMNGVIGMADLL 420

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
              +     +   +E    I  SG  +L I+ND+LD SK+ SGK+ L  + +S+ + +S 
Sbjct: 421 VKSKL----DEEQLELTKTIIESGESLLHIINDILDFSKLGSGKLELSPQAISVPDVISR 476

Query: 671 AISLVQLYANEKRILIR-TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
           AI  ++  A  K I +  TS  ++I  +L D   ++QI LN++ NAI FT +GG + I  
Sbjct: 477 AIETLRAVARNKDIALSMTSVQSDIGFLLIDPVRLRQIVLNLVGNAIKFTDTGG-VTIDV 535

Query: 730 THTS---NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
                  N EV + + DTG+G+    L +  + F Q       +  GTGLGL ++K +  
Sbjct: 536 LMQEVSNNVEVTINISDTGIGIPADALHRIFENFTQADGDTTRKYGGTGLGLSISKRLAK 595

Query: 787 ANMGKFYIFSTPAKGTLIEIIF 808
              G   + ST  +G+  ++  
Sbjct: 596 QMGGDIVVTSTVGEGSCFQVKL 617



 Score = 57.7 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 26/245 (10%), Positives = 66/245 (26%), Gaps = 11/245 (4%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN--HIGDLLKRQNTWYGKTTL 149
              ++ +++   KT G    + IG    ++ +      +    I D + +      +   
Sbjct: 278 DNRIEWVNDTFTKTTGYSFTEAIGRIPGELLNGPETSKSANSKIIDAINKLEPVRTEIVN 337

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
           +   G    + ++ +  PI+    E + F   GI     +             +      
Sbjct: 338 YTKSG--QKIWVETSISPIFDDTGELTMF--VGIERDISLIKQREVDLALARSEAEQAAA 393

Query: 210 IKKGHSSVEKEKYD-----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
            K    +    +       +          ++  +   LT+      + L      +L  
Sbjct: 394 AKSAFLATISHEIRTPMNGVIGMADLLVKSKLDEEQLELTKTIIESGESLLHIINDILDF 453

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
            +    + E             +   TL+  ++     LS  +  S   +         +
Sbjct: 454 SKLGSGKLELSPQAISVPDVISRAIETLRAVARNKDIALSMTSVQSDIGFLLIDPVRLRQ 513

Query: 325 TVDKC 329
            V   
Sbjct: 514 IVLNL 518



 Score = 45.0 bits (105), Expect = 0.046,   Method: Composition-based stats.
 Identities = 16/159 (10%), Positives = 37/159 (23%), Gaps = 7/159 (4%)

Query: 290 GTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSF 348
              +       E                         +       + +    + + N +F
Sbjct: 229 RRQRFEHAIILERRQTEIANETLRKKQRHFRWLAAVAESANDSVIISNTDNRIEWVNDTF 288

Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
              T Y   + I    G   LL+ P+ S +   K +               +     + +
Sbjct: 289 TKTTGYSFTEAIGRIPG--ELLNGPETSKSANSKIIDAINKLE---PVRTEIVNYTKSGQ 343

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
               +        +   E     GIE +    +  +  +
Sbjct: 344 KI-WVETSISPIFDDTGELTMFVGIERDISLIKQREVDL 381


>gi|262195449|ref|YP_003266658.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
 gi|262078796|gb|ACY14765.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
          Length = 928

 Score =  330 bits (846), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 105/482 (21%), Positives = 197/482 (40%), Gaps = 18/482 (3%)

Query: 336 YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIA 395
           Y+       +     +                  +         A         +  C  
Sbjct: 50  YAFDRQQVWDARSREIFGIAEDAPDPDFRNWLRSIHPDDRGRVVAELDAARRAEEPHCRW 109

Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
                + +         +            E +  +G+  +  D        +    +L 
Sbjct: 110 ----DYRVVRPGGEVRHVRAFGTLGRTHGGEFLYVSGMHFDVTDEVEALALRDDLDRRLA 165

Query: 456 SILEATSDGIAIIN--REGIILSTNRAVSKLFGYPVEDILRKPFTVF--LEQNTPSVMNH 511
            +LEA    + +++      I+  + ++  + GY  E ++  P      L  +  +   +
Sbjct: 166 FLLEANPAILYVLDVSAATRIVYLSPSIRAVLGYDPEVVIATPGWWPDTLHPDDRARAFY 225

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT--MHDISEWKQEKN 569
            L   +  D R T+  +      +   L L+  + +      + +   + DI++  Q ++
Sbjct: 226 ALEHTVRQDGRATV--VYRMRKADGSYLWLQDQLSQPHPERPHVIIGCLSDIADRMQIED 283

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  A++ A+  S  KS FLA +SHEIRTPL  ++G ++++ +    P       E  + 
Sbjct: 284 ELVQAREDAQAASRVKSQFLANMSHEIRTPLNGVLGMADLLLDTGLSP----EQRELLDA 339

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           +  S N +  ++ D+LDISKIE+GK+ +      L E V EA   + + A E+ + +   
Sbjct: 340 LQSSANALRGLIEDVLDISKIEAGKLEIEAVSFPLLELVYEAARAIAVRAQEQGLELIVD 399

Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748
               +P R+L D    +QI LN+LSNA+ FTP+G ++++     ++E + L VRDTGVG+
Sbjct: 400 AEPALPARVLGDPVRFRQIVLNLLSNAVKFTPAG-EVVVRVRQRADEHIELSVRDTGVGV 458

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
                E   + F Q   S   R  GTGLGL + + + +   GK +       G++  +  
Sbjct: 459 PEERREAIFESFTQSDGSTTRRFGGTGLGLTICRELAERMGGKLWYEPGDQGGSVFSVSL 518

Query: 809 PL 810
           PL
Sbjct: 519 PL 520


>gi|162456999|ref|YP_001619366.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
 gi|161167581|emb|CAN98886.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
          Length = 947

 Score =  330 bits (846), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 114/605 (18%), Positives = 219/605 (36%), Gaps = 45/605 (7%)

Query: 231 PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE---ESSLPEQEDFHTINLNQYTKKQ 287
           P H +++  ++S     A +  V  T                P  +    +     T   
Sbjct: 204 PLHAQLEAVLASGEPSVASEIPVRITRWTGETVERLYNVLCKPVHDVGGAVEGVMVTAFD 263

Query: 288 YFGTLQNNSKESFEYL----SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLF 342
               +    K     L    S              E    + +   P+  F         
Sbjct: 264 VTEQIGARRKAERLALELQQSVAQRLRAEQALRVNEERFRKALRGSPVMVFTQDRDLRYT 323

Query: 343 YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT 402
           + + SF         + +    G         L D  A + +   + D        R   
Sbjct: 324 WMHNSF----GKSEREVLGKTDG-------EVLEDPEAARSLDRTKRDVLASGVGQRREI 372

Query: 403 IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
                  +  +       A+   E +       +  + +  ++ +     +  ++ EA+ 
Sbjct: 373 AVRAGGRTQHIDVSIEPLADDTGEIIGITCTATDITERKSIEQALRASEARFRTVQEASP 432

Query: 463 DGIAII----NREGII-----LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
           DG  ++    +  G I     +  N A   + G   +D+  K   V +  +  +      
Sbjct: 433 DGFMMLRSVRDASGAISDFEWVYVNPATGPIVGGRGKDLEGKRLLVEVPGSALASAFDAY 492

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL-- 571
             ++       +E             ++ + +          L+ HDI+E K+   +   
Sbjct: 493 ARVVETGEPARIELSCAHEGAPRTFRAIAVALG-----DGVGLSFHDITEQKRADAERAQ 547

Query: 572 -----SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
                  A++ AE+ +  K +FLA VSHE+RTPL +I+G++ ++   R G +        
Sbjct: 548 LLDQEQRARQHAEQLNRLKDEFLATVSHELRTPLQSILGWARIL---RTGEVDAESLERG 604

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
              I+R+      ++ D+LD S I +GK+ L  +PV + + ++ A+ LV+  A  K + +
Sbjct: 605 LATIERNAKAQSQLIEDVLDASTILAGKLQLRTDPVDVRQVLATALDLVRPAALAKGVAV 664

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
            TS A+++   L D   ++Q+  N+L+NA+ FTPSGGQ+  +        + + V D G 
Sbjct: 665 DTSVADDVGIFLGDAERLQQVVWNLLANAVKFTPSGGQVR-ALARRVEATLEVEVEDNGE 723

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIE 805
           G+    L    + F Q          G GLGL + + + +A  G  +  S    KG    
Sbjct: 724 GIPKSFLPFLFERFRQADGGMTRAHGGLGLGLAIVRHLAEAQGGSVHAESDGEGKGARFR 783

Query: 806 IIFPL 810
           +  P+
Sbjct: 784 VRLPI 788



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 40/422 (9%), Positives = 104/422 (24%), Gaps = 30/422 (7%)

Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE 245
           +               +       I    S +++    +  + S         +   +  
Sbjct: 16  IIERFVGELRKRSAAVRDMPKPLIINSLPSFLDEVAASLEQRASTAGSKEAAREHGEMRW 75

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
            +     V+  E   L  S    + E      +   +   ++    +   +      L  
Sbjct: 76  EHGLDLGVMVREYGVLRQSILREMEEAGITPDLREIEALSERVDAGIAQ-AVSEHTRLQL 134

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY--ANPSFLLLTKYKSVDDIEIA 363
               +     +     +   + + P P        L +  ANP F  +     +    + 
Sbjct: 135 EAIETERRRTEIERGRSGSLLSQAPAPICFLKGAALVFELANPLFCRMVGRDDLLGKPLV 194

Query: 364 GGLSTLLDAPKLSDNNA-----------IKPVMLYRSDRTCIA--ASARLHTIQWNRENS 410
             +  L   P  +   A             PV + R     +    +     +       
Sbjct: 195 DAVPELRGQPLHAQLEAVLASGEPSVASEIPVRITRWTGETVERLYNVLCKPVHDVGGAV 254

Query: 411 LAMTFIPFEKANQFPEN----MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
             +    F+   Q             ++         ++ + +   +    L  +   + 
Sbjct: 255 EGVMVTAFDVTEQIGARRKAERLALELQQSVAQRLRAEQALRVNEERFRKALRGSPVMVF 314

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
             +R+      + +    FG    ++L K     L    P            +      +
Sbjct: 315 TQDRDLRYTWMHNS----FGKSEREVLGKTDGEVL--EDPEAARSLDRTKRDVLASGVGQ 368

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKES 582
           +  +      +   + + I+ L   +   +    T  DI+E K  +  L  ++       
Sbjct: 369 RREIAVRAGGRTQHIDVSIEPLADDTGEIIGITCTATDITERKSIEQALRASEARFRTVQ 428

Query: 583 SH 584
             
Sbjct: 429 EA 430



 Score = 61.2 bits (147), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 43/414 (10%), Positives = 97/414 (23%), Gaps = 46/414 (11%)

Query: 82  TVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQ 140
                +   A    +  +    + +G     ++G  L D    L   P +  +  +L   
Sbjct: 159 PAPICFLKGAALVFELANPLFCRMVG--RDDLLGKPLVDAVPELRGQPLHAQLEAVLASG 216

Query: 141 NTWYGKTTLWPI---EGTNLYVPIDLAALPIYSRNREFSG--FRGFGIVHVNRVDNDPRA 195
                      I    G  +    ++   P++       G     F +            
Sbjct: 217 EPSVASEIPVRITRWTGETVERLYNVLCKPVHDVGGAVEGVMVTAFDVTEQIGARRKAER 276

Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKE---------------KYDIFSQQSPPPHLRMKNKV 240
           L   L +  +     ++     E+                  D+          + + +V
Sbjct: 277 LALELQQSVAQRLRAEQALRVNEERFRKALRGSPVMVFTQDRDLRYTWMHNSFGKSEREV 336

Query: 241 SSLTEYYAHKDDVLKTEKYPLLTSEESS--LPEQEDFHTINLNQYTKKQYFGTLQNNSKE 298
              T+    +D               +S     +E                  L +++ E
Sbjct: 337 LGKTDGEVLEDPEAARSLDRTKRDVLASGVGQRREIAVRAGGRTQHIDVSIEPLADDTGE 396

Query: 299 SF----EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS----------HGNLFYA 344
                          S+       E       +  P  F +                 Y 
Sbjct: 397 IIGITCTATDITERKSIEQALRASEARFRTVQEASPDGFMMLRSVRDASGAISDFEWVYV 456

Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS---ARLH 401
           NP+   +   +  D      G   L++ P  +  +A                    A   
Sbjct: 457 NPATGPIVGGRGKDL----EGKRLLVEVPGSALASAFDAYARVVETGEPARIELSCAHEG 512

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
             +  R  ++A+        +   E    +    + +D     R+   ++ +L 
Sbjct: 513 APRTFRAIAVALGDGVGLSFHDITEQKRADAERAQLLDQEQRARQHAEQLNRLK 566


>gi|239907263|ref|YP_002954004.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239797129|dbj|BAH76118.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 869

 Score =  330 bits (846), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 122/703 (17%), Positives = 222/703 (31%), Gaps = 41/703 (5%)

Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
           +W      +P     L               R  +G R    V V  V+       +   
Sbjct: 42  SWRENFEAYPPVLEELQHARADTVKAYLGVERYMAGERH---VRVPDVEAFFDQALESCR 98

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
                + +  +     + E+                 +  ++    A  D+         
Sbjct: 99  DIARAMGKA-EAVGEGQAEREPFIQNLDRYAASIAAFRELAMQGMAAVSDNRAWLGVERQ 157

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS----------KESFEYLSHRNHPSL 311
                          T+             L N              +   ++       
Sbjct: 158 AAFAALEKQADALSETVRRCMDAAASRQTRLNNILFFAWISFLAFLAASLAIAGSRRRKA 217

Query: 312 SAYFDEGENLTPETVDKCPIPFFV--YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
                  E+      D+      V     G +   N +      Y     I        L
Sbjct: 218 EQAMLASEDKYRSLFDQARDAILVVDDDTGRILDCNRALAAEWGYPPETLIGRTTEAVGL 277

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
                    +   P  +   + +               E              +  E   
Sbjct: 278 -----TDPADDDAPASVLGQNGSLTTIRETRMRTAAGDER----LVSVKSGRFRLGEATV 328

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI---INREG--IILSTNRAVSKL 484
           +  I  +  + R  +  +      L S+ +   DG+     ++  G    L  ++ + ++
Sbjct: 329 RLDICRDITELRREEEALRGREAMLRSLGDNLPDGVIYTLEVDSAGNHRFLYVSQGLERI 388

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
            G PV   L     VF              EI S+   +  +        +  ++  +  
Sbjct: 389 LGLPVALALADAELVFASIVEDDRERLRQAEIQSMATGEPFDVQARILAPDGGVIWGQFR 448

Query: 545 IKKLPFSSCYS---LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
               P S           D+S  K+ +  L  A  +AE  S  KS+FLA +SHEIRTPL 
Sbjct: 449 AAPRPGSGRVVLFDGFYFDVSALKRIEGDLRRAMVVAETASQSKSEFLANISHEIRTPLN 508

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
            ++G  ++++    G         Y     + G  +  ++ D+LD S +E+G M +   P
Sbjct: 509 GVLGMLQLLETAPLGR----EEAGYVTTALKCGRGLTRVLGDILDFSLLEAGAMVIKSTP 564

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTP 720
           V + +  ++ +  + +    + I      A ++P R+L D   ++QI  N++ NAI FT 
Sbjct: 565 VDVRDVTADVLGALSIECRARGIDAGLVVAPDVPARVLTDGARLRQILFNLVGNAIKFTQ 624

Query: 721 SGGQ---IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
           +G     I +++       ++  V DTG+GM   +L+   +PF Q   S   R  GTGLG
Sbjct: 625 AGSVRLDIALASQRGQAAVLLFTVADTGIGMPEEKLDDVFEPFTQADGSLTRRFGGTGLG 684

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820
           L + K ++    G   + S    GT I+   P      P D +
Sbjct: 685 LGIVKRLLTLLGGFLAVESRVGVGTRIDFSLPCKLEQAPKDAV 727



 Score = 55.0 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 42/352 (11%), Positives = 87/352 (24%), Gaps = 21/352 (5%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTW--YGKT 147
           D  G + + +  L    G     +IG     V      D ++    +L +  +     +T
Sbjct: 244 DDTGRILDCNRALAAEWGYPPETLIGRTTEAVGLTDPAD-DDAPASVLGQNGSLTTIRET 302

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
            +    G    V +         R R         I              +  +     L
Sbjct: 303 RMRTAAGDERLVSVK------SGRFRLGEATVRLDICRDITELRREEEALRGREAMLRSL 356

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL---KTEKYPLLTS 264
            +          E  D           +   ++  L    A  D  L      +      
Sbjct: 357 GDNLPDGVIYTLE-VDSAGNHRFLYVSQGLERILGLPVALALADAELVFASIVEDDRERL 415

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD--EGENLT 322
            ++ +         ++         G +    + +    S R       YFD    + + 
Sbjct: 416 RQAEIQSMATGEPFDVQARILAPDGGVIWGQFRAAPRPGSGRVVLFDGFYFDVSALKRIE 475

Query: 323 PETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
            +      +        + F AN S  + T       +    G+  LL+   L    A  
Sbjct: 476 GDLRRAMVVAETASQSKSEFLANISHEIRTP------LNGVLGMLQLLETAPLGREEAGY 529

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
                +  R        +         ++ +   P +  +   + +    IE
Sbjct: 530 VTTALKCGRGLTRVLGDILDFSLLEAGAMVIKSTPVDVRDVTADVLGALSIE 581


>gi|254416706|ref|ZP_05030456.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196176446|gb|EDX71460.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 785

 Score =  330 bits (846), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 82/512 (16%), Positives = 190/512 (37%), Gaps = 21/512 (4%)

Query: 306 RNHPSLSAYFDEGENLTPETVDK-CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364
                        E       D+       +   G +  AN + L     +    I    
Sbjct: 286 AQRQQFQQALLASEQKFHAIFDQTFQFIGLLEPDGTVLEANQTALDFGGLRHDQVIGKPF 345

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
             +        +       +    +    I     +       +    + F      +  
Sbjct: 346 WQARWWTISAQTQAQLKDAIA-RSAQGEFIRYEVDVQ---GAGDRIATIDFSLKSVTDSS 401

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
            + +       +  + +  + ++     +     +  + G A++  +G  +  NRA+  L
Sbjct: 402 GQVVLLIPEGRDITEVKQIEEQLRESEERFRRAFDDAATGEALVTPDGQFIRVNRALCDL 461

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
            GY   ++L   F      +       Y+ ++L+ +++   E       K+  ++ + + 
Sbjct: 462 LGYQESELLATTFQDITYPDDLETDLGYVRQLLTDEIQA-YEMEKRYFHKQGHVIWILLS 520

Query: 545 IKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
           +  +  S      +   + DI+  KQ + ++ +     E+ +    DF   VSH++ +PL
Sbjct: 521 VSLVRNSQRQPLYFVGQIQDITHTKQTQIQMKNLVTELERSNRELEDFAYIVSHDLLSPL 580

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
             +   S+ +  + +  + + +  EY   + +    +   +NDLL +S++ +      F 
Sbjct: 581 HKMQMLSD-LLTEDYSQVLDEQGQEYLRRMRQVKERMQTFINDLLMLSRVTTQAQP--FI 637

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720
           PV+L+  V E +S + +   E    +       +P + AD   ++Q+  N+LSNA+ F  
Sbjct: 638 PVNLNTVVQEVLSDLDVQLQETGGTVEVE---KLPTVKADPLQMRQLMQNLLSNALKFHQ 694

Query: 721 SGGQIIISTTHTSN---EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
           S    ++      +   ++  + ++D G+G  +   E+  + F ++ +  +   EGTGLG
Sbjct: 695 SKIAPVVKVYSQPSQLPDQCEIVIKDQGIGFKSEYEEQIFEAFQRLHS--RRHYEGTGLG 752

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           L + + +   + G     S P +G    I  P
Sbjct: 753 LTICRKIATRHGGTITASSVPGEGARFTITLP 784



 Score = 78.1 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 56/150 (37%), Gaps = 5/150 (3%)

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
           D   +  ++ +     +  +I + T   I ++  +G +L  N+      G   + ++ KP
Sbjct: 285 DAQRQQFQQALLASEQKFHAIFDQTFQFIGLLEPDGTVLEANQTALDFGGLRHDQVIGKP 344

Query: 497 FTVFLEQNTPSVMNHYL-TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555
           F         +     L   I      + +          +++ ++   +K +  SS   
Sbjct: 345 FWQARWWTISAQTQAQLKDAIARSAQGEFIRYEVDVQGAGDRIATIDFSLKSVTDSSGQV 404

Query: 556 LTM----HDISEWKQEKNKLSHAKKIAEKE 581
           + +     DI+E KQ + +L  +++   + 
Sbjct: 405 VLLIPEGRDITEVKQIEEQLRESEERFRRA 434



 Score = 60.0 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/397 (8%), Positives = 102/397 (25%), Gaps = 29/397 (7%)

Query: 80  PRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLK 138
            +T +F   ++  G + E ++      G    ++IG          +       + D + 
Sbjct: 307 DQTFQFIGLLEPDGTVLEANQTALDFGGLRHDQVIGKPFWQARWWTISAQTQAQLKDAIA 366

Query: 139 RQNTWYGKTTLWPIEGTNLYV-PIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG 197
           R            ++G    +  ID +   +   + +       G               
Sbjct: 367 RSAQGEFIRYEVDVQGAGDRIATIDFSLKSVTDSSGQVVLLIPEG--RDITEVKQIEEQL 424

Query: 198 KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP--PPHLRMKNKVSSLTEYYAHKDDVLK 255
           +  +++F    +      ++                     ++++ + T       D L+
Sbjct: 425 RESEERFRRAFDDAATGEALVTPDGQFIRVNRALCDLLGYQESELLATTFQDITYPDDLE 484

Query: 256 TEK---YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
           T+      LLT E  +   ++ +     +          ++N+ ++   ++      + +
Sbjct: 485 TDLGYVRQLLTDEIQAYEMEKRYFHKQGHVIWILLSVSLVRNSQRQPLYFVGQIQDITHT 544

Query: 313 AYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                        +++                   F  +  +  +  +     LS LL  
Sbjct: 545 KQTQIQMKNLVTELERSNREL------------EDFAYIVSHDLLSPLHKMQMLSDLLTE 592

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASAR------LHTIQWNRENSLAMTFIPFEKANQFPE 426
                 +      L R  +              L  +    +  + +      +      
Sbjct: 593 DYSQVLDEQGQEYLRRMRQVKERMQTFINDLLMLSRVTTQAQPFIPVNLNTVVQEVLSDL 652

Query: 427 NMPQNGIEPEDVDTRINKRKME--IEVMQLCSILEAT 461
           ++            ++   K +       + ++L   
Sbjct: 653 DVQLQETGGTVEVEKLPTVKADPLQMRQLMQNLLSNA 689



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/327 (6%), Positives = 79/327 (24%), Gaps = 9/327 (2%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLL-KRQNTWYGKTT 148
             G    ++  L   +G    +++     D++    ++ +  ++  LL      +  +  
Sbjct: 447 PDGQFIRVNRALCDLLGYQESELLATTFQDITYPDDLETDLGYVRQLLTDEIQAYEMEKR 506

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
            +  +G    + I L+   + +  R+   F   G +         +   K L  +    +
Sbjct: 507 YFHKQGH--VIWILLSVSLVRNSQRQPLYF--VGQIQDITHTKQTQIQMKNLVTELERSN 562

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
              +  + +          +       +    S + +    +      +    + +  + 
Sbjct: 563 RELEDFAYIVSHDLLSPLHKMQMLSDLLTEDYSQVLDEQGQEYLRRMRQVKERMQTFIND 622

Query: 269 LPEQEDFHTINLNQYTKKQ--YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
           L       T                + ++     +                      + +
Sbjct: 623 LLMLSRVTTQAQPFIPVNLNTVVQEVLSDLDVQLQETGGTVEVEKLPTVKADPLQMRQLM 682

Query: 327 DKCPIPFFVYSHGNLFYANPSFLLLTKYKSV-DDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
                    +    +      +   ++     + +    G+    +  +       +   
Sbjct: 683 QNLLSNALKFHQSKIAPVVKVYSQPSQLPDQCEIVIKDQGIGFKSEYEEQIFEAFQRLHS 742

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLA 412
               + T +  +        +     A
Sbjct: 743 RRHYEGTGLGLTICRKIATRHGGTITA 769


>gi|169342707|ref|ZP_02863748.1| sensory box histidine kinase [Clostridium perfringens C str.
           JGS1495]
 gi|169299213|gb|EDS81283.1| sensory box histidine kinase [Clostridium perfringens C str.
           JGS1495]
          Length = 571

 Score =  330 bits (846), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 84/375 (22%), Positives = 170/375 (45%), Gaps = 39/375 (10%)

Query: 444 KRKMEIEVMQ-------LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             ++EI + +       L +IL++   G+   +R+  +L  N    K+FG   E I  K 
Sbjct: 226 AEQLEITMERFKDKQNGLEAILKSMGSGVIAFDRDMNVLMINPYAKKIFGISGEIIGNKL 285

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR-IIIKKLPFSSCYS 555
                ++            +         E     +  + K+L +R   I   P      
Sbjct: 286 LDYITDKEVLKAFFDEKDRV---------EIEVNYND-DPKILKIRKASIINEPEIIGTV 335

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
           + + DI++ K+ +              + +S F+A +SHE++TPLT+I GF+E ++    
Sbjct: 336 VVIQDITDIKKLE--------------NMRSQFVANISHELKTPLTSIKGFAETLR---- 377

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
               +    ++ + ID   + +  ++ D+L + +IE  +  +  E  ++DE + +   L+
Sbjct: 378 YVDDDETRNKFLSIIDEESDRLARLLEDILCLYEIEQKRSTV-LEEFNVDEEIEKVYMLL 436

Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
              A +K + I     +N   ++ D    KQ+ LN++SN++ +T  GG++ +  ++  + 
Sbjct: 437 NDQAKKKGVEIFLDTNSNC-VLMGDKDKFKQMLLNLVSNSVKYTEKGGKVRVE-SYNRDM 494

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            +IL + D G+G++  +L +  + F ++  ++     GTGLGL + K +V    G   + 
Sbjct: 495 NLILVIEDNGIGISAEDLPRIFERFYRVDKARSRESGGTGLGLAIVKHIVRLFDGDINVT 554

Query: 796 STPAKGTLIEIIFPL 810
           S    GT I I  P+
Sbjct: 555 SELGVGTKIVITIPI 569


>gi|332667571|ref|YP_004450359.1| PAS/PAC sensor hybrid histidine kinase [Haliscomenobacter hydrossis
           DSM 1100]
 gi|332336385|gb|AEE53486.1| PAS/PAC sensor hybrid histidine kinase [Haliscomenobacter hydrossis
           DSM 1100]
          Length = 857

 Score =  330 bits (846), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 111/576 (19%), Positives = 216/576 (37%), Gaps = 77/576 (13%)

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY--ANPSFLLLTKYK--- 355
           E              +    +    +   P    +    +  +   NP +  L   +   
Sbjct: 11  ENPGSNQWAITRKTMEAQALMVQNMLMTLPAFVCILRGADYVFDFVNPHYQQLFGKRELL 70

Query: 356 ------SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS-----DRTCIAASARLHTIQ 404
                 ++ ++   G    L +  +  +      +    +     +      +     ++
Sbjct: 71  GKPLLVALPELAGQGIEQILEEVYRTGEPYIGVDLPFLLARDENMEPELRYFNFCYQPMR 130

Query: 405 WNRENSLAMTFIPFEKANQFP--------ENMPQNGIEPEDVDT-----------RINKR 445
                  A+    +E   Q          E      +E +               R   +
Sbjct: 131 DEHNQIFAVLDYGYEVTEQVNAKTSNQKNEQQNALELEEKVQQRTFDLSAANGVLRKKNQ 190

Query: 446 KMEIEVMQL-----CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           ++E    +L      S++EA+ D +  I+ +G I   N A++ + G   + ++   F+++
Sbjct: 191 EIEETRGKLLSEYARSLIEASLDPLITISTKGKITDHNEALANITGKTRQQLIGSDFSLY 250

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTM 558
             +   +       E+                  E   +     + K    +     +  
Sbjct: 251 FTEPEKAS--EVYEEVFEKGF--VTNYPLTIIDGELTNVLFNGSVYKDEKGNVLGAVVVA 306

Query: 559 HDISEWKQEKNKLSHAK---------------------KIAEKESSHKSDFLARVSHEIR 597
            DI+  K+ +++L  AK                     +IA      K  FL+ +SHEIR
Sbjct: 307 RDITAQKRIESELIEAKVFAELAKGIAETAQSSAESATQIAVDAVKAKQQFLSNMSHEIR 366

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TP+ AIIGF++V+           +  EY   I  SG+ ++ ++ND+LD++K+++GKM+ 
Sbjct: 367 TPMNAIIGFTKVVLKTELSA----KQKEYLTAIKMSGDALIVLINDILDLAKVDAGKMDF 422

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAI 716
              P  L  +++  + L +    EK + +   +   IP +L  D   + QI LN++SNA+
Sbjct: 423 EETPFRLAFSITAMLHLFETKIQEKNLALVKVYDEEIPEVLVGDPVRLHQIILNLVSNAV 482

Query: 717 HFTPSGGQIIISTT--HTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
            FT  G QI +S    H   ++V +   V DTG+G+T  ++    + F Q  +       
Sbjct: 483 KFTNKG-QITVSVRMLHADADKVTIEFAVADTGIGITKDKIPTIFENFQQASSGTSRLYG 541

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           GTGLGL +AK +V+   G   + S   +G+    I 
Sbjct: 542 GTGLGLAIAKQLVEKQGGTIRVESVVEQGSTFSFIL 577


>gi|289432805|ref|YP_003462678.1| PAS/PAC sensor hybrid histidine kinase [Dehalococcoides sp. GT]
 gi|288946525|gb|ADC74222.1| PAS/PAC sensor hybrid histidine kinase [Dehalococcoides sp. GT]
          Length = 1262

 Score =  330 bits (846), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 109/750 (14%), Positives = 242/750 (32%), Gaps = 55/750 (7%)

Query: 87   WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP--NNHIGDLLKRQNTW- 143
            W  D    L   S+   +  G  A +++ +       +    P  +  + +L+K+   + 
Sbjct: 406  WEFDLANGLVHPSDGAREIYGLKA-EILTIPFVQQIPVPEDRPAMDKALNNLIKQNIPYD 464

Query: 144  YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                   P +G  LY+     ++  +   R       FG +           L +  + +
Sbjct: 465  IEFKIKRPTDGAILYI----HSIAEFDSKRNVV----FGTIQDITKRKQAEELLRESEAR 516

Query: 204  FSHLHEIKKGHSSVEKEKYDIFSQQSPP--PHLRMKNKVSSLTEYYAH---KDDVLKTEK 258
            F    +     +++       +              ++ ++L                  
Sbjct: 517  FRSTFDQSPIGAAIYGLDLKYWQVNEKFCQMLGYSASEFTNLKVSDITNSDDFAKDIIHL 576

Query: 259  YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
              L   E S     + +   + + +        +++ +     YL+     +     ++ 
Sbjct: 577  NRLKNGEISRYETDKRYLQKSGSIFWAHLSVAGIRDVTGNLLYYLAMIVDITTRKAAEDA 636

Query: 319  ENLTPETVDKCPIPFFVY--SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
                    +             G L  AN + +    Y     +           + K+ 
Sbjct: 637  LQKYKLIAEDSRDIILFMNKETGQLLEANSAAVKAYGYSREQLL-----------SMKIQ 685

Query: 377  DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
            +  A +  +L             L       ++          +            I  +
Sbjct: 686  NLRAPQARVLTARQLNQAHIRGMLFETFHQSKDGRVFPVEVSSRGADIEGTTTLINIIRD 745

Query: 437  DVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-----GIILSTNRAVSKLFGYPVED 491
              + +  +  +   +     +  + +D I +         G  +  N A   + GY  ++
Sbjct: 746  TTERKQAENALNESLQNYQVLFNSVTDAILVHQPAADYSAGKFIEVNDAALAMLGYSRKE 805

Query: 492  ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII--IKKLP 549
            +L+      + +     ++ +   I  ++    +       TK  K + + +   + K  
Sbjct: 806  LLQITPMDLMSKGKYP-VSAFADNIRYIEKNTEVVSEFAMETKSGKTIPVELHSRMFKFG 864

Query: 550  FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS--HKSDFLARVSHEIRTPLTAIIGFS 607
                      DISE K+ + +    +  +E  S      +  A ++HEI  PLT +IGF+
Sbjct: 865  GKRTVITLARDISERKKLEEEQKKLRYQSEMSSRLAAVGEMAAGIAHEINNPLTGVIGFA 924

Query: 608  EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
             ++  +   P      +E    I+     V++IV  +L  ++    +       V++ E 
Sbjct: 925  SILMEREDLPAD---VMEELQIINSGSQRVVEIVKRMLTFAR----QAKPVRSSVNITEL 977

Query: 668  VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA---IHFTPSGGQ 724
            +   + L         I +   +  ++P +  D   ++Q+ LN++ NA   +      G 
Sbjct: 978  IDSTLDLRSYVLKTANIEVVRHYEPDLPLLTVDSGQMQQVILNLILNAEYSMKKAHEKGI 1037

Query: 725  IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
            + I       E V +  RD G+GM+   L K  +PF    +     GEGTGLGL L+  +
Sbjct: 1038 LTIRVKKE-GEWVRMSFRDNGLGMSAETLGKLFQPFFTTKDP----GEGTGLGLSLSHGI 1092

Query: 785  VDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
            +  + G     S   +G    I  P+  + 
Sbjct: 1093 ILEHEGTIRGESILGEGAEFTIELPIKPSD 1122



 Score =  131 bits (329), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 48/507 (9%), Positives = 136/507 (26%), Gaps = 31/507 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D+ G   E+++     +G    ++IG    +      +D       + K   T   +  
Sbjct: 154 LDSEGRFLEVNQVWLDDMGYKREEVIGHWFGEFLQPDQVDLFRKRFPVFKATGTADTEFY 213

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           +   +G+   V +  +          F   +    +      +      +   +K+  L 
Sbjct: 214 MNRKDGS--VVLMAFSGKIACDAKGNFK--QTHCTLQDITQRHLADEAIRESQRKYQALF 269

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS---------SLTEYYAHKDDVLKTEKY 259
           E     + V       ++ +    +    + +          S    + H    L  ++ 
Sbjct: 270 ESIGETAFVCYINKREWADEFVELNAVACDMLGYTHEELLKVSARNLFFHPSSGLVLKEI 329

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFG--TLQNNSKESFEYLSHRNHPSLSAYFDE 317
                 +  +  + +    + +  + +  F    LQ                 ++   ++
Sbjct: 330 TDELYAQKMVTRECNLPHKDGHNISVEMTFHIFDLQGRPAVLTLAHDITIRKKIARELEQ 389

Query: 318 GENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
                 +        ++ +   N L + +     +        ++        +    + 
Sbjct: 390 SHRRLVKAEKVAGFGYWEFDLANGLVHPSDGAREIYG------LKAEILTIPFVQQIPVP 443

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           ++       L    +  I         +      L +  I    + +        G   +
Sbjct: 444 EDRPAMDKALNNLIKQNIPYDIEFKIKRPTDGAILYIHSIAEFDSKRNV----VFGTIQD 499

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
               +  +  +     +  S  + +  G AI   +      N    ++ GY   +     
Sbjct: 500 ITKRKQAEELLRESEARFRSTFDQSPIGAAIYGLDLKYWQVNEKFCQMLGYSASEFTNLK 559

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--- 553
            +     +  +    +L  +         E       K   +    + +  +   +    
Sbjct: 560 VSDITNSDDFAKDIIHLNRL-KNGEISRYETDKRYLQKSGSIFWAHLSVAGIRDVTGNLL 618

Query: 554 -YSLTMHDISEWKQEKNKLSHAKKIAE 579
            Y   + DI+  K  ++ L   K IAE
Sbjct: 619 YYLAMIVDITTRKAAEDALQKYKLIAE 645



 Score =  103 bits (258), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 44/514 (8%), Positives = 130/514 (25%), Gaps = 51/514 (9%)

Query: 89  IDAH-GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
           +DA+ G + + +  L   +G    +++G  L ++     I  +     +L+ +     + 
Sbjct: 29  LDANTGKIADANPFLLNILGYAQEEILGKELWEIGIFKDIASSRKAFAVLQEKEYIRYED 88

Query: 148 TLWP-IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                  G    V        +               +           L ++ ++++  
Sbjct: 89  LPLKTKSGQIQQVEFVSNVYWVGDEK------IIQCNIRDITDRKRAEELLRKTEERYRE 142

Query: 207 LHEIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
            ++           +                 + +V         + D +   +      
Sbjct: 143 FYQKSPIGYQSLDSEGRFLEVNQVWLDDMGYKREEVIGHWFGEFLQPDQVDLFRKRFPVF 202

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF-----EYLSHRNHPSLSAYFDEGE 319
           + +   + E +            + G +  ++K +F                     E +
Sbjct: 203 KATGTADTEFYMNRKDGSVVLMAFSGKIACDAKGNFKQTHCTLQDITQRHLADEAIRESQ 262

Query: 320 NLTPETVDKCPIPFFV------YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
                  +      FV               N     +  Y   + ++++        + 
Sbjct: 263 RKYQALFESIGETAFVCYINKREWADEFVELNAVACDMLGYTHEELLKVSARNLFFHPSS 322

Query: 374 KLSDNNAIKPVMLY----------RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
            L        +               D   I+     H        ++            
Sbjct: 323 GLVLKEITDELYAQKMVTRECNLPHKDGHNISVEMTFHIFDLQGRPAVLTLAH------- 375

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
                       +    +   R++E    +L    +    G    +    ++  +    +
Sbjct: 376 ------------DITIRKKIARELEQSHRRLVKAEKVAGFGYWEFDLANGLVHPSDGARE 423

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           ++G   E +                M+  L  ++  ++   +E   +    +  +L +  
Sbjct: 424 IYGLKAEILTIPFVQQIPVPEDRPAMDKALNNLIKQNIPYDIEFK-IKRPTDGAILYIHS 482

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI 577
           I +     +    T+ DI++ KQ +  L  ++  
Sbjct: 483 IAEFDSKRNVVFGTIQDITKRKQAEELLRESEAR 516



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 47/407 (11%), Positives = 114/407 (28%), Gaps = 35/407 (8%)

Query: 197 GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256
            +  + ++  L E  +    +        +  +P         +    +      ++ + 
Sbjct: 8   LEASELRYRRLFETAQDGILILDANTGKIADANPFLLN-----ILGYAQEEILGKELWEI 62

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY------------LS 304
             +  + S   +    ++   I       K   G +Q     S  Y              
Sbjct: 63  GIFKDIASSRKAFAVLQEKEYIRYEDLPLKTKSGQIQQVEFVSNVYWVGDEKIIQCNIRD 122

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIA 363
             +         + E    E   K PI +  + S G     N  +L    YK  + I   
Sbjct: 123 ITDRKRAEELLRKTEERYREFYQKSPIGYQSLDSEGRFLEVNQVWLDDMGYKREEVIGHW 182

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
            G       P   D    +  +   +          ++       + + M F      + 
Sbjct: 183 FGE---FLQPDQVDLFRKRFPVFKAT--GTADTEFYMNR---KDGSVVLMAFSGKIACDA 234

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD--GIAIINRE---GIILSTN 478
                  +    +     +    +     +  ++ E+  +   +  IN+       +  N
Sbjct: 235 KGNFKQTHCTLQDITQRHLADEAIRESQRKYQALFESIGETAFVCYINKREWADEFVELN 294

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
                + GY  E++L+          +  ++   +T+   L  ++ + +      K+   
Sbjct: 295 AVACDMLGYTHEELLKVSARNLFFHPSSGLVLKEITD--ELYAQKMVTRECNLPHKDGHN 352

Query: 539 LSLRII--IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
           +S+ +   I  L          HDI+  K+   +L  + +   K   
Sbjct: 353 ISVEMTFHIFDLQGRPAVLTLAHDITIRKKIARELEQSHRRLVKAEK 399



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 27/289 (9%), Positives = 74/289 (25%), Gaps = 38/289 (13%)

Query: 315 FDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
            +  E       +       +     G +  ANP  L +  Y   + +        +   
Sbjct: 8   LEASELRYRRLFETAQDGILILDANTGKIADANPFLLNILGYAQEEILGKELWEIGIFKD 67

Query: 373 PKLSDNN----------AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
              S               + + L             +  + W  +  +           
Sbjct: 68  IASSRKAFAVLQEKEYIRYEDLPLKTKSGQIQQVEF-VSNVYWVGDEKIIQCN------- 119

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
                        +  D +  +  +     +     + +  G   ++ EG  L  N+   
Sbjct: 120 -----------IRDITDRKRAEELLRKTEERYREFYQKSPIGYQSLDSEGRFLEVNQVWL 168

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
              GY  E+++   F  FL+ +   +         +       +     + K+  ++ + 
Sbjct: 169 DDMGYKREEVIGHWFGEFLQPDQVDLFRKRFPVFKATGTA---DTEFYMNRKDGSVVLMA 225

Query: 543 IIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
              K    +         T+ DI++       +  +++  +       +
Sbjct: 226 FSGKIACDAKGNFKQTHCTLQDITQRHLADEAIRESQRKYQALFESIGE 274


>gi|156973250|ref|YP_001444157.1| aerobic respiration control sensor protein ArcB [Vibrio harveyi
           ATCC BAA-1116]
 gi|156524844|gb|ABU69930.1| hypothetical protein VIBHAR_00931 [Vibrio harveyi ATCC BAA-1116]
          Length = 786

 Score =  330 bits (846), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 88/406 (21%), Positives = 177/406 (43%), Gaps = 19/406 (4%)

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
               +         +E E       + ++      L S ++A+ D I   N +G+    N
Sbjct: 122 RIKAEEAREEAMQDLENEVFQRERTQLELAERTALLRSFIDASPDLIYYRNADGVFSGCN 181

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
           RA+ +L G     ++         +     +     ++ + +   T E+        +  
Sbjct: 182 RAMEELTGKKEHQLVGLSPWDVYSKEVAEHIVDTDQKVFADNQAITYEQWLEYPDGRKHY 241

Query: 539 LSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
             LR +                 DI+E K+ +  L       EK S  K+ F++ +SHE+
Sbjct: 242 FELRKVPFYSKDGRHLGLVGFGRDITERKRHEESL-------EKASRDKTTFISTISHEL 294

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTPL  I+G S ++ + +          ++   I+ S   + +I ND++D+ K +  K+ 
Sbjct: 295 RTPLNGIVGLSRMLLDSQL----TEEQRKHMQTINVSAITLGNIFNDIIDMDKFDRRKLE 350

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNA 715
           L   P++ ++ V+E  S+  L A +K +       +++P+ I  D   ++Q+  N++SNA
Sbjct: 351 LLPAPLNFEDFVAEIESISALMAEQKGLRFDLERLSSLPKAIEVDATRLRQVIWNLVSNA 410

Query: 716 IHFTPSGGQI-IISTTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGE 772
           + FT  GG +  +S     +   +I+ V DTG+G+ + EL+K    + Q+ + +      
Sbjct: 411 MKFTKEGGVVMTVSADVEDDYATIIMEVEDTGIGIPDEELDKIFAMYYQVKSGKDNLHAV 470

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF--PLYDTSHP 816
           GTG+GL ++K +++   G   + S    G+   +    P+ + + P
Sbjct: 471 GTGIGLAVSKQLINMMDGDITVASEEGFGSTFTVSIHVPIVELAEP 516



 Score = 47.7 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/129 (12%), Positives = 37/129 (28%), Gaps = 5/129 (3%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID-PNNHIGDLLKRQNTWYGKTT 148
           +A G     +  + +  G    +++G+   DV      +   +    +         +  
Sbjct: 172 NADGVFSGCNRAMEELTGKKEHQLVGLSPWDVYSKEVAEHIVDTDQKVFADNQAITYEQW 231

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           L   +G       +L  +P YS++    G  GFG               ++  +  +   
Sbjct: 232 LEYPDGR--KHYFELRKVPFYSKDGRHLGLVGFG--RDITERKRHEESLEKASRDKTTFI 287

Query: 209 EIKKGHSSV 217
                    
Sbjct: 288 STISHELRT 296


>gi|220930752|ref|YP_002507661.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           cellulolyticum H10]
 gi|220001080|gb|ACL77681.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           cellulolyticum H10]
          Length = 607

 Score =  330 bits (846), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 87/372 (23%), Positives = 172/372 (46%), Gaps = 24/372 (6%)

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
            + +    ++  +  ++ +IL   +DG+   + +G+ +  N A  KL G        K F
Sbjct: 257 AELKKTLSEISSQKNKVETILNYMADGVMAFDLKGMAIHANPAARKLLGNDAVSHPFKEF 316

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT 557
            V +  +       Y  E    +    +  + +         ++     K P      + 
Sbjct: 317 AVKVGLDVRIEDIVYFEESPVRESDTIINDMYVKV-----YFAVFTDTNKKPE--GIIVV 369

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
           +HD +E ++ +              S + +F+A VSHE+RTP+T+I  ++E + +     
Sbjct: 370 LHDATEQQKLE--------------SMRREFVANVSHELRTPITSIKSYTETLLDGAV-- 413

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
             +     + + ID   + +  +V DLL +S++++ +MN   E VSLD  V   +  +++
Sbjct: 414 EDHETSNRFLSVIDSEADRMTRLVKDLLQLSRLDNQQMNWKIEKVSLDAMVKTIVERLKI 473

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737
            +  K   + +    +IP I AD   ++Q+ +N++SN+I +T   G+I +      N+ V
Sbjct: 474 ESQRKNQKLESYVIGDIPVINADKDRLEQVVVNLISNSIKYTAEYGEITVYVGKIYND-V 532

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
            ++V D+G+G+    L +  + F ++  ++     GTGLGL +AK +V A+ G   I S 
Sbjct: 533 YMKVTDSGIGIPGESLPRVFERFYRVDKARSRDMGGTGLGLSIAKEIVQAHGGTINISSE 592

Query: 798 PAKGTLIEIIFP 809
             KGT + +  P
Sbjct: 593 VGKGTEVVVKIP 604


>gi|161522483|ref|YP_001585412.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans ATCC
           17616]
 gi|160346036|gb|ABX19120.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans ATCC
           17616]
          Length = 799

 Score =  330 bits (846), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 105/618 (16%), Positives = 212/618 (34%), Gaps = 30/618 (4%)

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
               +    ++V +     F   + P  +      +           +       L+ + 
Sbjct: 45  ATAVMFVAIATVLQALAIRFGGANMPLAVYYPLLAAIAWATSFLFGLIATLASSVLVWTL 104

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
             S P               +     +   +  +    +   +         G       
Sbjct: 105 FLSDPAAYAMSLSERLVRLGEFALIGVLACAVVAAVRHARVTNERARRREAAGRAQFEAL 164

Query: 326 VDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
           ++  P         G L Y N +   L   +  D    AG     +      D   ++  
Sbjct: 165 LNALPDGVIAADTNGRLTYVNAAAAALLGCRPDDA---AGRALRDVLQLTDRDGRRVQTS 221

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
            +  +       +   H ++      + +       A+          +  +    R   
Sbjct: 222 AVEHALGGTRT-TCERHWLRAAGGEPVPVAETAAPIADADGNVDGAVLLLRDASADRARA 280

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
              ++      ++++A+ D +  I+R+  I+S N A  ++FGY  E    + F   +   
Sbjct: 281 DAAQVR----RAVVDASPDALIGIDRDARIVSWNPAAQRIFGYDEEAAYGRRFDSLIAM- 335

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564
              +  H L +              L   ++       +  + +   +   + +  I+  
Sbjct: 336 -RWLKRHPLVQTFDHLREIVGPVDLLCVRRDGGRFRATVAARPVRGEARDGVALS-ITLR 393

Query: 565 K------------QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
           +            +       A + A   +  K + LA VSHE+RTPL  I G+ EV++N
Sbjct: 394 ETGAQRRQDRRTQRSLRSARDAGEQAATSNRLKDELLATVSHELRTPLNVIYGWIEVLRN 453

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
                L     ++  + IDRS   +  +V D+LD S + +GK+ L   PV +    ++ +
Sbjct: 454 SGDDAL----RVQAIDAIDRSARSLTRMVGDILDASSLSTGKLRLDTMPVDVVRLFADVV 509

Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
           +  Q  A+   I +          +  D   ++Q+  N++SNA+ FTP+GG + +S  H 
Sbjct: 510 AAFQTAASSAGIALEFESRVATCIVSGDAERLRQMLSNLVSNALKFTPAGGDVTVSVAH- 568

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
            +   +L V DTG G+    +      F +  +S      G GLGL + + +V  + G  
Sbjct: 569 DDTHAVLTVTDTGQGIAPEFVPHVFDMFRRADDSPASSRRGLGLGLSIVRHIVQLHGGTV 628

Query: 793 YIFST-PAKGTLIEIIFP 809
            + S    +GT   +  P
Sbjct: 629 VVDSAGRNRGTTFTVKLP 646



 Score = 68.5 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 33/260 (12%), Positives = 65/260 (25%), Gaps = 21/260 (8%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR--QNTWYGKT 147
           D +G L  ++      +G       G  L DV  +   D        ++     T     
Sbjct: 176 DTNGRLTYVNAAAAALLGCRPDDAAGRALRDVLQLTDRDGRRVQTSAVEHALGGTRTTCE 235

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
             W        VP+   A PI   +    G                 A  +R     S  
Sbjct: 236 RHWLRAAGGEPVPVAETAAPIADADGNVDGAVLLLRDASADRARADAAQVRRAVVDASPD 295

Query: 208 H----EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK------------- 250
                +      S       IF       + R  + + ++     H              
Sbjct: 296 ALIGIDRDARIVSWNPAAQRIFGYDEEAAYGRRFDSLIAMRWLKRHPLVQTFDHLREIVG 355

Query: 251 --DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
             D +          +  ++ P + +         T ++     + + +      S R+ 
Sbjct: 356 PVDLLCVRRDGGRFRATVAARPVRGEARDGVALSITLRETGAQRRQDRRTQRSLRSARDA 415

Query: 309 PSLSAYFDEGENLTPETVDK 328
              +A  +  ++    TV  
Sbjct: 416 GEQAATSNRLKDELLATVSH 435



 Score = 55.4 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/226 (11%), Positives = 62/226 (27%), Gaps = 6/226 (2%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID    +   +    +  G       G R   +  +  +  +  +      +    G   
Sbjct: 300 IDRDARIVSWNPAAQRIFGYDEEAAYGRRFDSLIAMRWLKRHPLVQTFDHLREIV-GPVD 358

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           L  +          +AA P+    R+     G  +    R     R   +R  +      
Sbjct: 359 LLCVRRDGGRFRATVAARPVRGEARD-----GVALSITLRETGAQRRQDRRTQRSLRSAR 413

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           +  +  ++  + K ++ +  S      +      +       DD L+ +    +     S
Sbjct: 414 DAGEQAATSNRLKDELLATVSHELRTPLNVIYGWIEVLRNSGDDALRVQAIDAIDRSARS 473

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
           L           +  T K    T+  +    F  +      + S+ 
Sbjct: 474 LTRMVGDILDASSLSTGKLRLDTMPVDVVRLFADVVAAFQTAASSA 519


>gi|270308774|ref|YP_003330832.1| sensor histidine kinase/response regulator [Dehalococcoides sp. VS]
 gi|270154666|gb|ACZ62504.1| sensor histidine kinase/response regulator [Dehalococcoides sp. VS]
          Length = 1379

 Score =  330 bits (846), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 105/739 (14%), Positives = 243/739 (32%), Gaps = 49/739 (6%)

Query: 93   GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWP 151
            G + E +    K  G    +++   + ++            +         +  ++    
Sbjct: 526  GQILETNAAATKAYGYTRRQLLNKTVYEIRPPETRAAIPMQLAQADSEGILF--ESYHMR 583

Query: 152  IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
             +G+   V +      I +  R         ++             K + K    +    
Sbjct: 584  KDGSIFPVEVSSRGATI-NNTRVV-----VSVIRDISERKKAEEKFKTIFKHQETILATV 637

Query: 212  KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271
                +                     + +     +Y         +  P+ +  E+++  
Sbjct: 638  PDIIAEMDTNKVYTWINESGLEFFGDDVIGKEASHYFIGKQDTYQKIRPVFSGGENTVYV 697

Query: 272  QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE----TVD 327
            +      +        +  +L++ + ++   LS  +  +     +E    +      T D
Sbjct: 698  ESWQRRKDGEPRLLGWWAHSLKDITGKTVGALSVASDITDRKRMEENLVKSAAEWSTTFD 757

Query: 328  KCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIE-IAGGLSTLLDAPKLSDNNAIKPVM 385
                   +   G  +   N +F    K    + I      L      P     +      
Sbjct: 758  SINDMICIVDAGYMILRVNNAFAKSLKLPPEEIIGKHCYELIHSTKQPHFMCPHKKTLET 817

Query: 386  LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
                       +               +        +     +    +     + + ++ 
Sbjct: 818  GRSQVSEFFEENLN-----------TWVEATTSPVLDANNRVVGSVHVIKNINERKKSEE 866

Query: 446  KMEIEVMQLCSILEATSDGIAIINRE-----GIILSTNRAVSKLFGYPVEDILRKPFTVF 500
             +  E     S+  + +D I +   +       IL  N A + +  Y  +++       F
Sbjct: 867  ALRAERETYMSLFNSVTDAIIVHRPKSDNTPDKILEVNDACTAMLEYSRDELQNMTVRDF 926

Query: 501  LEQNT-PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH 559
            ++     + +   + E +  +   T E+  +  T  E  + +R  I              
Sbjct: 927  VKGMAGDAALFTSVIEQIERNKEATFERTFVTKTGREIPVEIRPRIFLFGGKPTVITMAR 986

Query: 560  DISEWKQEKNKLSHAKKIAEKESS--HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
            DIS+ K+ + +    ++ A+  +      +  A ++HEI  PLT ++GF+E++ N+   P
Sbjct: 987  DISDLKKIEAEQQKLRERADMANRLAAVGEMAAGIAHEINNPLTGVVGFAELLSNRPDLP 1046

Query: 618  LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
            +      +    I+     V++IV  LL  ++    +       VS+ + +  +++L   
Sbjct: 1047 VD---VQDSLKVINNGSLRVVEIVKRLLTFAR----QTKPIVSKVSITDIIDNSLTLRSY 1099

Query: 678  YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA---IHFTPSGGQIIISTTHTSN 734
                  I I   +A ++P I  D   ++Q+ LN++ NA   +      G + I T  T  
Sbjct: 1100 VLETAGITIIRDYAPDLPWINVDPAQIQQVFLNLILNAEQSMKKAHEKGTLSIKTEKT-G 1158

Query: 735  EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
            E + +  +D G G+    ++K  +PF    +     G+GTGLGL L++ ++  + G+ + 
Sbjct: 1159 EYIRISFKDDGTGIAADVMDKIFQPFFTTKDP----GQGTGLGLSLSQGIILEHNGRIWA 1214

Query: 795  FSTPAKGTLIEIIFPLYDT 813
             + P  G    I  P+  T
Sbjct: 1215 ENNPEGGATFVIELPVSTT 1233



 Score =  157 bits (397), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 58/516 (11%), Positives = 141/516 (27%), Gaps = 42/516 (8%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID-PNNHIGDLLKRQNT---WYGK 146
            +G +   +       G    ++      ++     ID  +  +   L+ +     + G+
Sbjct: 157 PNGRILAANPAACSMFGRTETEI-----REIGRDGLIDVTDPRLQQALEIRAATGEFKGE 211

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
            T    +GT     I     P+     E    R   I+       +     +  ++++  
Sbjct: 212 LTFLRSDGTTFPGEITSKIYPVG--EGEL---RTAMIIRDVSKRKEAEEKLRTAEERYRL 266

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPH--LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
             +       +    +      +       + K  +   T   A+           L   
Sbjct: 267 TLDNMLEGCQIIGRDWRYIYLNTMAVRHSRKPKEALIGCTMMEAYPGIENTELFIHLRRC 326

Query: 265 EESSLPE--QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
            E+ +    +  F   +  +   +     +          L               E   
Sbjct: 327 MENRIAARIENRFIFPDNAEGWFELSIEPVPE--GIFILSLDITRRRETEKQLQISEERF 384

Query: 323 PETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
               D+ PI   +          N +   +  Y   +       L+ +            
Sbjct: 385 HRIFDQVPIGIAITDQYFKFTQVNKTICRMMGYSEKE-------LTAITFKEITHPKYLA 437

Query: 382 KPVMLYR--SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
             +   +  S             I+ +  +            +   + +       +   
Sbjct: 438 YDLKQLKLLSAGVIDNFERDKQYIRKDG-SVFWGHISVGAIKDDQGKILYYTPCILDITK 496

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILRKPFT 498
            +  ++ ++    +   I + + D I  +++  G IL TN A +K +GY    +L K   
Sbjct: 497 RKQTEQALQ----KYKLIADDSRDIILFLDKNSGQILETNAAATKAYGYTRRQLLNKTVY 552

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII--KKLPFSSCYSL 556
                 T + +   L +  S  +       +    K+  +  + +      +  +     
Sbjct: 553 EIRPPETRAAIPMQLAQADSEGIL----FESYHMRKDGSIFPVEVSSRGATINNTRVVVS 608

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
            + DISE K+ + K     K  E   +   D +A +
Sbjct: 609 VIRDISERKKAEEKFKTIFKHQETILATVPDIIAEM 644



 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 51/573 (8%), Positives = 150/573 (26%), Gaps = 43/573 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ--NTWYGK 146
            D +    ++++ + + +G    ++  +   +++   ++  +     LL     + +   
Sbjct: 398 TDQYFKFTQVNKTICRMMGYSEKELTAITFKEITHPKYLAYDLKQLKLLSAGVIDNFERD 457

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                 +G+       ++   I     +   +     +               L K    
Sbjct: 458 KQYIRKDGS--VFWGHISVGAIKDDQGKILYYTPC--ILDITKRKQTEQ---ALQKYKLI 510

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
             + +     ++K    I    +         + ++ + T Y     +        L  +
Sbjct: 511 ADDSRDIILFLDKNSGQILETNAAATKAYGYTRRQLLNKTVYEIRPPETRAAIPMQLAQA 570

Query: 265 EESSLPEQEDFHTINLNQYTKK--QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
           +   +  +      + + +  +      T+ N                    F       
Sbjct: 571 DSEGILFESYHMRKDGSIFPVEVSSRGATINNTRVVVSVIRDISERKKAEEKFKTIFKHQ 630

Query: 323 PETVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
              +   P          +  + N S L        DD+         +           
Sbjct: 631 ETILATVPDIIAEMDTNKVYTWINESGLEFFG----DDVIGKEASHYFIGKQDTYQKIRP 686

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
                                 + + E    + +      +   + +    +  +  D +
Sbjct: 687 VF------SGGENTVYVESWQRRKDGEP-RLLGWWAHSLKDITGKTVGALSVASDITDRK 739

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
             +  +     +  +  ++ +D I I++   +IL  N A +K    P E+I+ K     +
Sbjct: 740 RMEENLVKSAAEWSTTFDSINDMICIVDAGYMILRVNNAFAKSLKLPPEEIIGKHCYELI 799

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLT 557
                        + L     Q  E              +      +  ++         
Sbjct: 800 HSTKQPHFMCPHKKTLETGRSQVSEFFEENLN-----TWVEATTSPVLDANNRVVGSVHV 854

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH----EIRTP--LTAIIGFSEVIK 611
           + +I+E K+ +  L   ++      +  +D  A + H    +  TP  +  +      + 
Sbjct: 855 IKNINERKKSEEALRAERETYMSLFNSVTD--AIIVHRPKSD-NTPDKILEVNDACTAML 911

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
                 L N    ++   +     L   ++  +
Sbjct: 912 EYSRDELQNMTVRDFVKGMAGDAALFTSVIEQI 944



 Score =  137 bits (344), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 55/499 (11%), Positives = 130/499 (26%), Gaps = 34/499 (6%)

Query: 94  YLKEISEELPKTIGNYAFKMIGMRLCDVSDI-LHIDPNNHIGDLLKRQN-TWYGKTTLWP 151
            L   + ++    G    ++ G    D                 L  +N T   +  +  
Sbjct: 35  RLIYANPKMTVLTGFSLEEITGKPFVDFISPKYRPMVLERYQRRLAGENVTNQYEIEIVS 94

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
            +   + V I+ + +    +           I+         +      + +   L +  
Sbjct: 95  KDNRKIPVEINASYIEYEDKPANM------AILRDLTEYKMSQLKLAENEARCHELFKNS 148

Query: 212 KGHSSVEKEKYDIFSQQSPP---PHLRMKN--KVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
                +      I +                 ++            + +  +    T E 
Sbjct: 149 YDAILLTIPNGRILAANPAACSMFGRTETEIREIGRDGLIDVTDPRLQQALEIRAATGEF 208

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
                               + +   +   + +                   E     T+
Sbjct: 209 KGELTFLRSDGTTFPGEITSKIYPVGEGELRTAMIIRDVSKRKEAEEKLRTAEERYRLTL 268

Query: 327 DKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
           D        +       Y N   +  ++ K  + +     +            N    + 
Sbjct: 269 DNMLEGCQIIGRDWRYIYLNTMAVRHSR-KPKEALIGCTMMEAY-----PGIENTELFIH 322

Query: 386 LYRSDRTCIAASARLHTIQWNR-ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
           L R     IAA      I  +  E    ++  P  +            +  +    R  +
Sbjct: 323 LRRCMENRIAARIENRFIFPDNAEGWFELSIEPVPE--------GIFILSLDITRRRETE 374

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           ++++I   +   I +    GIAI ++       N+ + ++ GY  +++    F       
Sbjct: 375 KQLQISEERFHRIFDQVPIGIAITDQYFKFTQVNKTICRMMGYSEKELTAITFKEITHPK 434

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT----MHD 560
             +     L  +LS  +    E+      K+  +    I +  +       L     + D
Sbjct: 435 YLAYDLKQLK-LLSAGVIDNFERDKQYIRKDGSVFWGHISVGAIKDDQGKILYYTPCILD 493

Query: 561 ISEWKQEKNKLSHAKKIAE 579
           I++ KQ +  L   K IA+
Sbjct: 494 ITKRKQTEQALQKYKLIAD 512



 Score =  103 bits (258), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 29/267 (10%), Positives = 76/267 (28%), Gaps = 15/267 (5%)

Query: 315 FDEGENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
             E E    E          +   +G +  ANP+   +      +      G   L+   
Sbjct: 134 LAENEARCHELFKNSYDAILLTIPNGRILAANPAACSMFGRTETEI--REIGRDGLI--- 188

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
            ++D    + + +  +          L  ++ +                +    +    I
Sbjct: 189 DVTDPRLQQALEIRAATGE---FKGELTFLRSDGTTFPGEITSKIYPVGEGE--LRTAMI 243

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
             +    +  + K+     +    L+   +G  II R+   +  N    +    P E ++
Sbjct: 244 IRDVSKRKEAEEKLRTAEERYRLTLDNMLEGCQIIGRDWRYIYLNTMAVRHSRKPKEALI 303

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553
                        + +  +L   +   +   +E   +     E    L I          
Sbjct: 304 GCTMMEAYPGIENTELFIHLRRCMENRIAARIENRFIFPDNAEGWFELSIEPVP----EG 359

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEK 580
             +   DI+  ++ + +L  +++   +
Sbjct: 360 IFILSLDITRRRETEKQLQISEERFHR 386



 Score = 96.6 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 45/516 (8%), Positives = 136/516 (26%), Gaps = 39/516 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI-LHIDPNNHIGDLLKRQNTWYGKT 147
           I        ++    +        +IG  + +      + +   H+   ++ +     + 
Sbjct: 278 IGRDWRYIYLNTMAVRHSRKPKEALIGCTMMEAYPGIENTELFIHLRRCMENRIAARIEN 337

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                +        +L+  P+        G   F +        +     +  +++F  +
Sbjct: 338 RFIFPDN--AEGWFELSIEPV------PEGI--FILSLDITRRRETEKQLQISEERFHRI 387

Query: 208 HEIKKGHSSVEKEKYDIFSQQ---SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY--PLL 262
            +      ++  + +                 K   +   +   H   +    K    L 
Sbjct: 388 FDQVPIGIAITDQYFKFTQVNKTICRMMGYSEKELTAITFKEITHPKYLAYDLKQLKLLS 447

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
                +    + +   + + +      G ++++  +   Y       +     ++     
Sbjct: 448 AGVIDNFERDKQYIRKDGSVFWGHISVGAIKDDQGKILYYTPCILDITKRKQTEQALQKY 507

Query: 323 PETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
               D             G +   N +      Y     +      +  +   +  +  A
Sbjct: 508 KLIADDSRDIILFLDKNSGQILETNAAATKAYGYTRRQLL------NKTVYEIRPPETRA 561

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
             P+ L ++D   I   +    ++ +             +            +  +  + 
Sbjct: 562 AIPMQLAQADSEGILFESYH--MRKDGS---IFPVEVSSRGATINNTRVVVSVIRDISER 616

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +  + K +       +IL    D IA ++   +    N +  + FG   +D++ K  + +
Sbjct: 617 KKAEEKFKTIFKHQETILATVPDIIAEMDTNKVYTWINESGLEFFG---DDVIGKEASHY 673

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF----SSCYSL 556
                       +  + S          +    K+ +   L      L      +     
Sbjct: 674 FIG--KQDTYQKIRPVFSGGENTVY-VESWQRRKDGEPRLLGWWAHSLKDITGKTVGALS 730

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
              DI++ K+ +  L  +           +D +  V
Sbjct: 731 VASDITDRKRMEENLVKSAAEWSTTFDSINDMICIV 766



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 59/138 (42%), Gaps = 2/138 (1%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
           + K+    +   +++E ++DGI II ++  ++  N  ++ L G+ +E+I  KPF  F+  
Sbjct: 7   RNKLHQSNILYSTLVEKSNDGIIII-QDERLIYANPKMTVLTGFSLEEITGKPFVDFISP 65

Query: 504 NTPSVMNH-YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
               ++   Y   +   ++    E   +     +  + +     +          + D++
Sbjct: 66  KYRPMVLERYQRRLAGENVTNQYEIEIVSKDNRKIPVEINASYIEYEDKPANMAILRDLT 125

Query: 563 EWKQEKNKLSHAKKIAEK 580
           E+K  + KL+  +    +
Sbjct: 126 EYKMSQLKLAENEARCHE 143


>gi|170734548|ref|YP_001773662.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia cenocepacia
           MC0-3]
 gi|169820586|gb|ACA95167.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia cenocepacia
           MC0-3]
          Length = 768

 Score =  330 bits (846), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 101/560 (18%), Positives = 189/560 (33%), Gaps = 33/560 (5%)

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS---LSAYFDEGENLTP 323
           +        +T  L     +     L      +   L H    +                
Sbjct: 71  TLFLSDPAAYTAPLPDRLVQLGTFILIGALVCAIASLLHHTRLTNDRARRREAATRRQFE 130

Query: 324 ETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
             +   P        +G L Y N +   L   +  + +        L             
Sbjct: 131 AVLRALPHGVIATDPNGRLTYLNAAAAELVGCRPDEAV-GRPVRDVLRIVDHEGRRVPTT 189

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
           P+           A++  H +Q      + +  +     +          +  +    R 
Sbjct: 190 PLDHAL---GGAEATSDRHWLQAGSGEPVPIVAVASPIGDADGNLDGAVLLLRDAGADRA 246

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
                 ++     +++EA+ D I  I+  G I S N A  ++FGY   D   + F   + 
Sbjct: 247 RVDASRLQ----HAVVEASPDAIVGIDASGRIASWNAAAQRIFGYDEADARGRRFDTLIA 302

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM---- 558
                +  + L +              L   ++ +     +    +   +   + +    
Sbjct: 303 --RRWLRLNPLADAFDAMQEPVGPLELLCVRRDGRRFRATVSACPVQGDARAYVALSLTL 360

Query: 559 --------HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
                    D+   +  +      +  A+  +  K + LA VSHE+RTPL  I G+ EV+
Sbjct: 361 RETGAQRRRDLRAQRSLQGARDA-RDQADTSNRLKDELLATVSHELRTPLNVIYGWIEVL 419

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
           +N     L      +  + IDRS   +  +V D+LD S + +GK+ L   PV +    S+
Sbjct: 420 RNTGDHAL----QHQAVDAIDRSARSLTRMVGDILDASSLATGKLRLDATPVDVVRLFSD 475

Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
            +   Q  A+   IL+      +   +  D   ++Q+  N++SNA+ FTP GG + +   
Sbjct: 476 QVGTFQTAASSAGILLEFDCDASACIVSGDAERLRQMLSNLISNALKFTPGGGSVTVGLA 535

Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
                  +L V DTG G+           F +  +S      G GLGL + + +   + G
Sbjct: 536 -RDGGHAVLTVADTGQGIATEFTPYVFDMFRRADDSPASPRRGLGLGLSIVRHIAQLHGG 594

Query: 791 KFYIFST-PAKGTLIEIIFP 809
              + S    +GT   +  P
Sbjct: 595 SVTVASAGRDRGTTFTVTLP 614



 Score = 80.8 bits (198), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 29/252 (11%), Positives = 63/252 (25%), Gaps = 9/252 (3%)

Query: 76  FDPIPRTVRF-TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS----DILHIDPN 130
           F+ + R +       D +G L  ++    + +G    + +G  + DV           P 
Sbjct: 129 FEAVLRALPHGVIATDPNGRLTYLNAAAAELVGCRPDEAVGRPVRDVLRIVDHEGRRVPT 188

Query: 131 NHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVD 190
             +   L            W   G+   VPI   A PI   +    G     ++     D
Sbjct: 189 TPLDHAL--GGAEATSDRHWLQAGSGEPVPIVAVASPIGDADGNLDGA--VLLLRDAGAD 244

Query: 191 NDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK 250
                  +          +   G  +  +      + Q    +     +        A +
Sbjct: 245 RARVDASRLQHAVVEASPDAIVGIDASGRIASWNAAAQRIFGYDEADARGRRFDTLIARR 304

Query: 251 DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310
              L          +E   P +      +  ++        +Q +++             
Sbjct: 305 WLRLNPLADAFDAMQEPVGPLELLCVRRDGRRFRATVSACPVQGDARAYVALSLTLRETG 364

Query: 311 LSAYFDEGENLT 322
                D     +
Sbjct: 365 AQRRRDLRAQRS 376


>gi|298530374|ref|ZP_07017776.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509748|gb|EFI33652.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 862

 Score =  330 bits (846), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 106/425 (24%), Positives = 183/425 (43%), Gaps = 26/425 (6%)

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS- 462
             +      +     + A +  E   +  +E  +   ++ +R  E    +  ++L+A S 
Sbjct: 5   YKDLAQENELLRRELKVAREAAEITSKMVVEQFEQTEQMLRRYREANAQR-RAVLDAASR 63

Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRK-PFTVFLEQNTPSVMNHYLTEILS--- 518
             I   +  G I   N     L GY   D+  +                  L   L+   
Sbjct: 64  MSIIATDLSGNITLFNPGAENLLGYASSDVAGRMNILSLHTTEDLERHRASLKATLTSST 123

Query: 519 --------LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQ 566
                     L+Q           +  LL + + I  +  +      Y  T  D++  K 
Sbjct: 124 GMEIFEHYTSLQQHDTGEWQYICSDGTLLPVSLSITSIYNAEGMREGYLFTAMDLTLRKS 183

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
            + KL  AK+ AE+ S+ + +FLAR+SHEIRTP+ AI G + ++ +       N    +Y
Sbjct: 184 LEQKLVAAKEEAEQASACRGEFLARMSHEIRTPMNAITGMAYLLGSTEL----NHVQQDY 239

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
              I  S + +L I+ND+LD SKI++G+M L   P SL + +   +++V   A EK + I
Sbjct: 240 VRKIIDSADTLLAIINDILDFSKIDAGRMELEELPFSLQQIIGRMLNVVGARAEEKGLKI 299

Query: 687 RTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEV--ILRVR 742
           +T     +P  ++ D   + QI LN+ SNA+ FT  G   + ++       +V  +  V 
Sbjct: 300 QTHIHPGVPDSLVGDALRLGQIILNLCSNAVKFTSQGEVALTVTLQKERQHQVDLLFCVS 359

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG G+T  + E+  + F Q   S   +  G+GLGL + K +     G+ ++ S P +G+
Sbjct: 360 DTGTGITPEKAEQLFQAFQQADGSITRKYGGSGLGLAICKELTQMMGGEIWVESIPDQGS 419

Query: 803 LIEII 807
                
Sbjct: 420 SFFFT 424



 Score = 40.8 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 36/289 (12%), Positives = 82/289 (28%), Gaps = 35/289 (12%)

Query: 67  YLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGM-RLCDVSDIL 125
             +++   V D   R        D  G +   +      +G  +  + G   +  +    
Sbjct: 49  EANAQRRAVLDAASRMS--IIATDLSGNITLFNPGAENLLGYASSDVAGRMNILSLHTTE 106

Query: 126 HIDPNNHIGDL----------------LKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIY 169
            ++ +                      L++ +T  G+      +GT   +P+ L+   IY
Sbjct: 107 DLERHRASLKATLTSSTGMEIFEHYTSLQQHDT--GEWQYICSDGTL--LPVSLSITSIY 162

Query: 170 SRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS 229
           +      G+    +            L K L++K     E  +  S+   E     S + 
Sbjct: 163 NAEGMREGYLFTAM---------DLTLRKSLEQKLVAAKEEAEQASACRGEFLARMSHEI 213

Query: 230 PPPHLRMKNKVSSLTEYYA-HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288
             P   +      L      H       +      +  + + +  DF  I+  +   ++ 
Sbjct: 214 RTPMNAITGMAYLLGSTELNHVQQDYVRKIIDSADTLLAIINDILDFSKIDAGRMELEEL 273

Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV--DKCPIPFFV 335
             +LQ         +  R                P+++  D   +   +
Sbjct: 274 PFSLQQIIGRMLNVVGARAEEKGLKIQTHIHPGVPDSLVGDALRLGQII 322


>gi|302879443|ref|YP_003848007.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
           ES-2]
 gi|302582232|gb|ADL56243.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
           ES-2]
          Length = 1346

 Score =  330 bits (846), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 89/430 (20%), Positives = 168/430 (39%), Gaps = 56/430 (13%)

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
             +      +          ++ +    ++   ++E T DGI + N +G  +  N+A + 
Sbjct: 427 ANDLAYGIAVLRIRAAHADQEQALRASELRYRLLVEQTVDGIFLANAQGQYIDVNQAGAA 486

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           + GY   +I     +  +       +   +    +      +        K+  +    +
Sbjct: 487 MLGYSTVEICTLNISDVIAIEEIGRIPDEVARFKNG---SVVVSEWQFKRKDGSIFLGEV 543

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK---------------------------- 575
            + +   + C    + DI+  ++ +N+L  A+                            
Sbjct: 544 -VGRQIENGCIQGILRDITFRREAENELQRARLAALNLAQDALEARAKLEILNDSLESEI 602

Query: 576 --------------KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
                           A+  S  KSDFLA +SHEIRTP+ AIIG + +  +    P    
Sbjct: 603 SDRKLALKDLEIARNAADLASRAKSDFLANMSHEIRTPMNAIIGLTRITLDSELAP---- 658

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
           +  ++   +  +   +L+I++D+LD SKIE+ K+ +      L++ + E   L      E
Sbjct: 659 KQRDHLRKVYNASRALLNILDDILDYSKIEANKLEIERVEFILEDVIRECFDLFMQKLQE 718

Query: 682 KRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---- 736
           K + +       I   +L D   + QI  N+++NAI FT  G +I I     S       
Sbjct: 719 KELELFIEIDPLISCSLLGDPLRLGQILNNLINNAIKFTQRG-EIHIRAALISENNQTLN 777

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           +   VRDTG+GM   + ++    F Q  +S   +  G+GLGL ++K +V+   G   + S
Sbjct: 778 LKFSVRDTGIGMDQSQQDRLFNAFTQADSSITRKYGGSGLGLTISKRLVELMGGALSVAS 837

Query: 797 TPAKGTLIEI 806
               G+    
Sbjct: 838 EKDIGSEFTF 847



 Score = 45.0 bits (105), Expect = 0.051,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 48/137 (35%), Gaps = 7/137 (5%)

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHY 512
            S+L +  + + + + EG IL+ NRA    FG  +E I    +P  +  E  TP +    
Sbjct: 145 QSMLNSLVESVLVFSPEGKILACNRAAELFFGCSLETIQSNLRPVQLLHENGTPFLEEDI 204

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL-----PFSSCYSLTMHDISEWKQE 567
              I               +     +  +    + +            L++ +ISE K+ 
Sbjct: 205 PVNITIRTKAACRNVPVGYADLSGMVRWVLANCEPVIEPLTGEIKAAVLSLLEISEQKKN 264

Query: 568 KNKLSHAKKIAEKESSH 584
            ++     +     S+ 
Sbjct: 265 ADEQLRLNRTLRAYSAS 281



 Score = 42.7 bits (99), Expect = 0.23,   Method: Composition-based stats.
 Identities = 17/167 (10%), Positives = 45/167 (26%), Gaps = 9/167 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            +  +A G   ++++     +G    ++  + + DV  I  I          K  +    
Sbjct: 468 IFLANAQGQYIDVNQAGAAMLGYSTVEICTLNISDVIAIEEIGRIPDEVARFKNGSVVVS 527

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +      +G+     +           R+       GI+       +     +R      
Sbjct: 528 EWQFKRKDGSIFLGEVV---------GRQIENGCIQGILRDITFRREAENELQRARLAAL 578

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD 252
           +L +      +  +   D    +     L +K+   +          
Sbjct: 579 NLAQDALEARAKLEILNDSLESEISDRKLALKDLEIARNAADLASRA 625


>gi|149279499|ref|ZP_01885629.1| PAS [Pedobacter sp. BAL39]
 gi|149229792|gb|EDM35181.1| PAS [Pedobacter sp. BAL39]
          Length = 814

 Score =  330 bits (846), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 107/494 (21%), Positives = 203/494 (41%), Gaps = 16/494 (3%)

Query: 321 LTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST-LLDAPKLSDN 378
                +   PI    +      ++ + + L +++            +   + + P   ++
Sbjct: 38  QLAAIICNVPISLITLIDETRQWFKSRTGLEISETPREVAFCQYTIMDREVFEVPDTWND 97

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
              +  +L   D      +    T   +      +  I  +     P+      +   +V
Sbjct: 98  ERFRSNVLVTGDPGIRFYAGYPLTDP-DGYALGTLCVIDRKPNQLTPQQHTALRLLSAEV 156

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
              I +R+ + E+     I   ++D I + + +G++   N +   L G   E +L +   
Sbjct: 157 MQLIVERRQKEELKNFEKIFRLSNDLICVSDHQGLLKRVNPSFKMLLGIDPESMLGQSLF 216

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM 558
             +           +  + S +    +  I          + ++  +   P +       
Sbjct: 217 ELVHPEDLEETYQRMEHLGSGEA--IVNFIHRVRHTSGAYIDIQWTVTPDPSTGDLFAIG 274

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            DI+E K ++  L  A  +AE+ S  KS+FLA +SHEIRTPL  IIGF++++        
Sbjct: 275 RDITEKKAQERHLKQAIAMAEEASIAKSEFLANMSHEIRTPLNGIIGFADLVLKTEL--- 331

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
            +   ++Y   ++ S N +L I+ND+LD SKIE+G+M LH E   L E   +A  ++   
Sbjct: 332 -SEVQLQYLTVVNESANSLLAIINDILDFSKIEAGRMELHLEASDLHELSCQAADIITFQ 390

Query: 679 ANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-----T 732
             +K I +  +   ++P  I  D   +KQ+ +N+LSNA  FT +G +I +          
Sbjct: 391 IQQKGIEMLLNVPLDLPESIWTDPLRLKQVIINLLSNAAKFTDTG-EIELKIEVLEYLSA 449

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
                   VRDTG+G+   +  +  + F Q   S   R  GTGLGL ++  ++     + 
Sbjct: 450 EAARFRFSVRDTGIGIKLEKQREIFEAFAQEDVSTTKRYGGTGLGLTISNELLALMDSRL 509

Query: 793 YIFSTPAKGTLIEI 806
            + S+P  G+    
Sbjct: 510 QLMSSPGVGSTFFF 523



 Score = 44.2 bits (103), Expect = 0.083,   Method: Composition-based stats.
 Identities = 15/137 (10%), Positives = 31/137 (22%), Gaps = 9/137 (6%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNT-WYGKTT 148
           D  G LK ++      +G     M+G  L ++     ++      + L            
Sbjct: 187 DHQGLLKRVNPSFKMLLGIDPESMLGQSLFELVHPEDLEETYQRMEHLGSGEAIVNFIHR 246

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           +    G  + +   +   P             F I              K+         
Sbjct: 247 VRHTSGAYIDIQWTVTPDPSTGD--------LFAIGRDITEKKAQERHLKQAIAMAEEAS 298

Query: 209 EIKKGHSSVEKEKYDIF 225
             K    +    +    
Sbjct: 299 IAKSEFLANMSHEIRTP 315


>gi|312215607|emb|CBX95559.1| similar to putative histidine kinase group protein [Leptosphaeria
           maculans]
          Length = 1313

 Score =  330 bits (846), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 102/551 (18%), Positives = 201/551 (36%), Gaps = 61/551 (11%)

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYA-NPSFLLLTKYKSVDDIEIAGGLST 368
            ++A   E E       +  P+  +  +   L    +  +   T       I        
Sbjct: 428 EIAAQIQENERQFESIANFMPVMVWTTTPDGLHDWFSQRWYDYTGLTVEQSIGEG---WR 484

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
           L   P+                        R             M        +     +
Sbjct: 485 LPFHPEDMKITVKSWFHCL-KTGEEYNTEYRCQRF---DGEWRWMLGRALPIFDDSGRIV 540

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST----------- 477
              G   +  D  + +++      QL  +++     +  +NR+  ++             
Sbjct: 541 KWIGTCTDIHDLVVARQEARRTREQLQQVIQHAKILLWAVNRDNKLVLLEGDDGDTKDDG 600

Query: 478 ------NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL---EKI 528
                 NR   ++ G  + D+ +      +           + EIL    +  +     I
Sbjct: 601 KLGGGGNR--EEMLGQDIYDVFQ------IPAMERERWQEPIHEILEGKQQTEIVMGRYI 652

Query: 529 TLGSTKEEKLLSLRIIIKKLPFSS-----CYSLTMHDISEWK----------QEKNKLSH 573
           +       +L+ L    +                  D++E +          +E ++L  
Sbjct: 653 SEARFYRTRLVPLLNTSRTAGVDGKVFVDGVIGVSMDVTELREREEQLREQEKENSRLLA 712

Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
               A++ S  KS+ LA  SHE+RTP+  +IG SE++ +       N    E    I RS
Sbjct: 713 NTAAAKEASRMKSNLLANTSHELRTPIAGVIGMSELLFDMDL----NEEQKECTENIHRS 768

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693
            + +L ++ND+LD SK+ESG++++     SL   + +   ++   A  K +  ++   + 
Sbjct: 769 ASSLLTVINDILDFSKVESGRLDVEEVQFSLSVVLRDVNKMMSFAAQRKGLAYQSFIQDE 828

Query: 694 I---PRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVI--LRVRDTGVG 747
           +    R++ D   ++QI +N+L+N+I FT  G  ++ +  +  +   V     V DTG+G
Sbjct: 829 VEMDLRVMGDPGRLRQILINVLTNSIKFTSVGVVKLTVGISRETKNTVTVNFTVSDTGIG 888

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           +     ++  +PF Q  +S   R  GTGLGL ++K +V+   G+ ++ S   +GT     
Sbjct: 889 IEEEVRKRLFQPFSQADSSTARRFGGTGLGLAISKNLVELMKGQIWLDSKLGQGTTATFW 948

Query: 808 FPLYDTSHPHD 818
            P       +D
Sbjct: 949 IPFSKVPCAND 959



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 23/224 (10%), Positives = 52/224 (23%), Gaps = 6/224 (2%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQNTWY 144
            W     G     S+      G    + IG           +          LK    + 
Sbjct: 451 VWTTTPDGLHDWFSQRWYDYTGLTVEQSIGEGWRLPFHPEDMKITVKSWFHCLKTGEEYN 510

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN-RVDNDPRALGKRLDKK 203
            +      +G   +  +   ALPI+  +      +  G       +    +   +  ++ 
Sbjct: 511 TEYRCQRFDGE--WRWMLGRALPIFDDSGRIV--KWIGTCTDIHDLVVARQEARRTREQL 566

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
              +   K    +V ++   +  +                        D+    + P + 
Sbjct: 567 QQVIQHAKILLWAVNRDNKLVLLEGDDGDTKDDGKLGGGGNREEMLGQDIYDVFQIPAME 626

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
            E    P  E        +    +Y    +         L+   
Sbjct: 627 RERWQEPIHEILEGKQQTEIVMGRYISEARFYRTRLVPLLNTSR 670


>gi|84685347|ref|ZP_01013245.1| sensory box histidine kinase/response regulator [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84666504|gb|EAQ12976.1| sensory box histidine kinase/response regulator [Rhodobacterales
           bacterium HTCC2654]
          Length = 847

 Score =  330 bits (846), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 102/479 (21%), Positives = 191/479 (39%), Gaps = 20/479 (4%)

Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSD--NNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
                 SV  I+ A             D  +       L  +     A  A L   +   
Sbjct: 117 RDFLDTSVPLIDGADDALARELPVLFEDMLDTRTTVRELAATGLGYFAQQADLRREEIAD 176

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
                                    +   +       R +E    ++ +I+  + D I +
Sbjct: 177 TLFYLAILTIVVL---TGLFAASVVLFRLNRSNEARARTIEAASRRMETIVNTSLDAIVV 233

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFL-EQNTPSVMNHYLTEILSLDLRQTLE 526
            NR G I++ N A   +FGY  E ++ +  +  +   +  +     +    +   ++ + 
Sbjct: 234 SNRTGRIIAFNDAAEIIFGYKREQVIGQLMSEIIVPPHLRNAHEAGMERFRTTGEKRVIG 293

Query: 527 K---ITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEKE 581
           +          +  +    + I+    S    +   + DIS   + +  L  A+  A   
Sbjct: 294 QGRIKLEAMRSDGSVFPAEMAIESAEGSDGEIFVGYLRDISHRVKAETDLVEARDKAVAG 353

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
              KS+FLA +SHE+RTPL  ++G   ++K  +       +  +Y + ++ SG L+L  +
Sbjct: 354 EKAKSEFLAVMSHEMRTPLNGLLGTLALLKGTKLSA----KQAQYVDNLEVSGGLLLTHI 409

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS-FANNIPRILAD 700
           ND+LD++K E+GK+++ F P  L   V   +   +  A+     I  S     +P ++ D
Sbjct: 410 NDVLDVTKYEAGKLDVDFVPTDLSALVRSVVDNQRDLASASENTIEWSWVGKPLPPVMTD 469

Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EVILRVRDTGVGMTNYELEKAM 757
            + ++Q+ +N++ NA+ FT  GG+I I           +V + V DTG+G+   ++++  
Sbjct: 470 PQRLRQVLINLVGNAVKFT-RGGRIRIEIGAVPQGGGADVTITVSDTGIGIAPEDIDRLF 528

Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           + F     S      GTGLGL +A+ +  A  G     S   +G+   I  PL   S P
Sbjct: 529 EDFETGDRSYGRARNGTGLGLGIARRLTRALGGTIGAESELGEGSTFWIDLPLDYASDP 587



 Score = 50.8 bits (120), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 26/331 (7%), Positives = 71/331 (21%), Gaps = 20/331 (6%)

Query: 131 NHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVH----- 185
             +   L+   T       W    T   V ++   L I     +         V      
Sbjct: 31  GEVLRKLRLLETAASDNIQW----TLSQVEVEYLDLAIAIEQFQLGRTDDLDTVRREFDI 86

Query: 186 -VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244
             +R+            ++                    +           +      + 
Sbjct: 87  FYSRIRTLSEGDLYAGLREQPAFARQLSVIRDFLDTSVPLIDGADDALARELPVLFEDML 146

Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
           +      ++  T         +    E  D                   +         +
Sbjct: 147 DTRTTVRELAATGLGYFAQQADLRREEIADTLFYLAILTIVVLTGLFAASVVLFRLNRSN 206

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364
                ++ A     E +   ++D           G +   N +  ++  YK    I    
Sbjct: 207 EARARTIEAASRRMETIVNTSLDAI---VVSNRTGRIIAFNDAAEIIFGYKREQVIGQL- 262

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR--LHTIQWNRENSLAMTFIPFEKAN 422
            +S ++  P L + +         +    +    R  L  ++ +             ++ 
Sbjct: 263 -MSEIIVPPHLRNAHEAGMERFRTTGEKRVIGQGRIKLEAMRSDGS---VFPAEMAIESA 318

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
           +  +     G   +       +  +     +
Sbjct: 319 EGSDGEIFVGYLRDISHRVKAETDLVEARDK 349



 Score = 40.0 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 27/338 (7%), Positives = 75/338 (22%), Gaps = 32/338 (9%)

Query: 93  GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-----NHIGDLLKRQNTWYGKT 147
           G +   ++      G    ++IG  + ++    H+               +++    G+ 
Sbjct: 238 GRIIAFNDAAEIIFGYKREQVIGQLMSEIIVPPHLRNAHEAGMERFRTTGEKRVIGQGRI 297

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
            L  +       P ++A       + E       G +                  K    
Sbjct: 298 KLEAMRSDGSVFPAEMAIESAEGSDGEI----FVGYLRDISHRVKAETDLVEARDKAVAG 353

Query: 208 HEIKKGHSSVEKEKYD-----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
            + K    +V   +       +    +     ++  K +   +       +L T    +L
Sbjct: 354 EKAKSEFLAVMSHEMRTPLNGLLGTLALLKGTKLSAKQAQYVDNLEVSGGLLLTHINDVL 413

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
              +    + +            +      ++ +  S   +                   
Sbjct: 414 DVTKYEAGKLDVDFVPTDLSALVRSVVDNQRDLASASENTIEWSWVGKPLPPVMTDPQRL 473

Query: 323 PETVDKC-PIPFFVYSHGNLFYANPSFLLLTK------YKSVDDIEIAGGLSTLLDAPKL 375
            + +             G +     +                        +  L +  + 
Sbjct: 474 RQVLINLVGNAVKFTRGGRIRIEIGAVPQGGGADVTITVSDTGIGIAPEDIDRLFEDFET 533

Query: 376 SDNNAIK-----------PVMLYRSDRTCIAASARLHT 402
            D +  +              L R+    I A + L  
Sbjct: 534 GDRSYGRARNGTGLGLGIARRLTRALGGTIGAESELGE 571


>gi|91793273|ref|YP_562924.1| ATP-binding region, ATPase-like protein [Shewanella denitrificans
           OS217]
 gi|91715275|gb|ABE55201.1| PAS/PAC sensor hybrid histidine kinase [Shewanella denitrificans
           OS217]
          Length = 935

 Score =  330 bits (846), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 115/776 (14%), Positives = 251/776 (32%), Gaps = 81/776 (10%)

Query: 105 TIGNYAFKMIGM--------------RLCDVSDILHIDPNNHIGDLLKRQNTWYGKT--- 147
            +G  + ++                 R   +S     +       L+ +           
Sbjct: 1   MLGYCSDEVCNRLSMAVITLNEELVARAAALSTEFGDNIAPGFEALVFKAKHDLDDINPL 60

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
           TL    G+       ++   +        G+   G  +  R + D +       +    L
Sbjct: 61  TLIRKNGS--RFSAMVSVTSLRDATAAVIGYLLIGTDNSARKEADDKLWQAS--QYARSL 116

Query: 208 HEIKKGHSSVEKEKYDIFSQQSP---PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
            E              I            L  +  + +   +Y               ++
Sbjct: 117 LEASLDPLVTINLSGKITDVNEASIKATGLDREALIGTDFSHYFTDPHEANKGYREAFSN 176

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
              +          N             +++  +     +     +     DE       
Sbjct: 177 GSVT-DYPLTIRHRNGRLIDVLYNASVYRDHKGQVLGLFAAARDITARKRADEALLKAGA 235

Query: 325 TVDKCP-----IPFFVYSHGNLFYANPSFLLLTKYKSVDDI----------EIAGGLSTL 369
             +              + G +   N     +  Y ++D I               +   
Sbjct: 236 LQNAIFNSANFSSIATDAKGVIQIFNVGAERMLGYAAIDVINKLTPADISEPQEIVIRAR 295

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
             + +L          L    R  I     L  I+ +     A+        +     + 
Sbjct: 296 ALSHELDTPITPGFDALVFKARRGIEDIYELTYIRKDGSRFPAI-VSVTALRDAHNNIIG 354

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
              I  ++   +  +  +        +I  + +      + +G+I   N    ++ GY  
Sbjct: 355 YLLIGTDNTARKRAEEALLKAGALQRAIFNSANFSSIATDAKGVIQIFNVGAERMLGYTA 414

Query: 490 EDILRK-PFTVFLEQNTPSVMNHYLTEILSLDLRQTLE-------------KITLGSTKE 535
            +++ K       +     +    L++ L   +    E                    K+
Sbjct: 415 AEVMDKITPADISDPKEMVLRAAQLSKELETSIAPGFEALVFKASRGIEDIYQLTYIRKD 474

Query: 536 EKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNK--------------LSHAKKI 577
                  + +  L  +      + L   D +   Q + +              L  +K I
Sbjct: 475 GSRFPAVVSVTALRDAYNVIIGFLLIGTDNTARIQVEEEREQLTATLQDKNAELESSKAI 534

Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
           AEK +  KS+FL+ +SHE+RTPL AI+GF+++++  +               I ++G  +
Sbjct: 535 AEKANRAKSEFLSSMSHELRTPLNAILGFAQLLEKGQPTLTHTQEVR--IQQIIKAGWYL 592

Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697
           L ++N++LD++ IESG+++L  E V L + ++E+ ++V+  A ++ I +     ++    
Sbjct: 593 LSLINEILDLAVIESGRLSLSRESVLLIDVINESKAMVEPQALKREIRLNFLPFSHALHA 652

Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS-----NEEVILRVRDTGVGMTNYE 752
            AD   +KQ+ +N+L+NAI +    G I +  T         + + + ++D G G++   
Sbjct: 653 NADHTRLKQVLINLLTNAIKYNRQHGTITVECTEVKAIDKLQDRIRITIKDNGYGLSEAN 712

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           + +  +PF ++   +    EGTG+GL + K +V+   G   + S    G+   I  
Sbjct: 713 ISQLFQPFNRL-GQESGSQEGTGIGLVVTKQLVELMGGTIGVKSQVGVGSEFWIEL 767



 Score = 70.8 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 46/448 (10%), Positives = 112/448 (25%), Gaps = 58/448 (12%)

Query: 50  EQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNY 109
           + S   + + +    + Y  S      DP+         I+  G + +++E   K  G  
Sbjct: 95  DNSARKEADDKLWQASQYARSLLEASLDPLV-------TINLSGKITDVNEASIKATGLD 147

Query: 110 AFKMIGMRLCDVSDILHIDPNNH---IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAAL 166
              +IG    D S     DP+       +     +      T+    G    + +   A 
Sbjct: 148 REALIG---TDFSHYFT-DPHEANKGYREAFSNGSVTDYPLTIRHRNGRL--IDVLYNAS 201

Query: 167 PIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK-------------- 212
                  +  G   F                 +     + +                   
Sbjct: 202 VYRDHKGQVLGL--FAAARDITARKRADEALLKAGALQNAIFNSANFSSIATDAKGVIQI 259

Query: 213 ----GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
                   +     D+ ++ +P      +  V          D  +      L+      
Sbjct: 260 FNVGAERMLGYAAIDVINKLTPADISEPQEIVIRARALSHELDTPITPGFDALVFKARRG 319

Query: 269 LPE--QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
           + +  +  +   + +++        L++       YL      +     +E         
Sbjct: 320 IEDIYELTYIRKDGSRFPAIVSVTALRDAHNNIIGYLLIGTDNTARKRAEEALLKAGALQ 379

Query: 327 DKC-----PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS----------TLLD 371
                          + G +   N     +  Y + + ++                    
Sbjct: 380 RAIFNSANFSSIATDAKGVIQIFNVGAERMLGYTAAEVMDKITPADISDPKEMVLRAAQL 439

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
           + +L  + A     L       I    +L  I+ +     A+        + +   +   
Sbjct: 440 SKELETSIAPGFEALVFKASRGIEDIYQLTYIRKDGSRFPAV-VSVTALRDAYNVIIGFL 498

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILE 459
            I  ++      + ++E E  QL + L+
Sbjct: 499 LIGTDNT----ARIQVEEEREQLTATLQ 522



 Score = 41.2 bits (95), Expect = 0.73,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 49/157 (31%), Gaps = 21/157 (13%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGM-RLCDVSDI-LHIDPNNHIGDLLK-------- 138
            DA G ++  +    + +G  A +++      D+SD    +     +   L+        
Sbjct: 393 TDAKGVIQIFNVGAERMLGYTAAEVMDKITPADISDPKEMVLRAAQLSKELETSIAPGFE 452

Query: 139 -------RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNR--V 189
                  R      + T    +G+    P  ++   +        GF   G  +  R  V
Sbjct: 453 ALVFKASRGIEDIYQLTYIRKDGS--RFPAVVSVTALRDAYNVIIGFLLIGTDNTARIQV 510

Query: 190 DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFS 226
           + +   L   L  K + L   K       + K +  S
Sbjct: 511 EEEREQLTATLQDKNAELESSKAIAEKANRAKSEFLS 547


>gi|302184841|ref|ZP_07261514.1| PAS [Pseudomonas syringae pv. syringae 642]
          Length = 779

 Score =  330 bits (846), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 114/426 (26%), Positives = 201/426 (47%), Gaps = 18/426 (4%)

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
           AR+H +Q N +       +  +   +         +          +R +     +L  I
Sbjct: 215 ARVHQVQRNAQRLALGHPLLPQPPEKDEIGQLGTRLVEAGQLLVERERALRDNEERLRLI 274

Query: 458 LEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           +E   D GI  ++R G I + N    ++ GY  ++I+ + F+VF  Q            +
Sbjct: 275 IEGVKDYGIFALDRNGYITTWNAGAERIKGYTEQEIIGQHFSVFYLQQECPQHPDM--AL 332

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNKLS 572
               +     +      K+       ++I     S      +S    DIS+ +  +  L 
Sbjct: 333 HEATVNGRYTEEGWRQRKDGSRFWASVVITAQYDSHDELRGFSKITRDISDRRVAEIALG 392

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
            A++ AE+ S  KS+FL+R+SHE+RTPL +I+GF++++                  +I R
Sbjct: 393 TAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLL-----DMDSPASQRPQIGHILR 447

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR--TSF 690
           +G  +L ++N++LDI++IE+G ++L  EPVSL   + EA+ LV   A +  I ++   + 
Sbjct: 448 AGQHLLKLINEVLDIARIEAGHVSLVLEPVSLSSVLEEALVLVSPMAADANIELQPLPNL 507

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
            + I  ++AD + + Q+ LN+LSNAI +    GQ+ I    T+  +V + V DTG G+  
Sbjct: 508 PDEIG-VVADRQRLIQVLLNLLSNAIKYNRPAGQVRIEIEQTAE-QVTVSVVDTGYGIAP 565

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             + +  KPF ++        EGTGLGL L+K+M++   G   + +TP +G    +  PL
Sbjct: 566 ERIGQLFKPFERLDA--NPSVEGTGLGLALSKSMLEMMHGTLSVQNTPDEGCRFILALPL 623

Query: 811 YDTSHP 816
                P
Sbjct: 624 VRVQPP 629



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/259 (8%), Positives = 69/259 (26%), Gaps = 20/259 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH--IDPNNHIGDLLKRQNTW 143
            + +D +GY+   +    +  G    ++IG               P+  + +       +
Sbjct: 283 IFALDRNGYITTWNAGAERIKGYTEQEIIGQHFSVFYLQQECPQHPDMALHEATVNGR-Y 341

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGF---------RGFGIVHVNRVDNDPR 194
             +      +G+  +  + + A   Y  + E  GF         R    + +     +  
Sbjct: 342 TEEGWRQRKDGSRFWASVVITAQ--YDSHDELRGFSKITRDISDRRVAEIALGTAREEAE 399

Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254
              +   +  S +    +   +       +    SP         +    ++     + +
Sbjct: 400 RASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSPASQRPQIGHILRAGQHLLKLINEV 459

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
                 L  +   +         ++L+   ++         +  + E     N P     
Sbjct: 460 ------LDIARIEAGHVSLVLEPVSLSSVLEEALVLVSPMAADANIELQPLPNLPDEIGV 513

Query: 315 FDEGENLTPETVDKCPIPF 333
             + + L    ++      
Sbjct: 514 VADRQRLIQVLLNLLSNAI 532


>gi|224826722|ref|ZP_03699822.1| multi-sensor hybrid histidine kinase [Lutiella nitroferrum 2002]
 gi|224600942|gb|EEG07125.1| multi-sensor hybrid histidine kinase [Lutiella nitroferrum 2002]
          Length = 1418

 Score =  330 bits (846), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 119/782 (15%), Positives = 245/782 (31%), Gaps = 87/782 (11%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            ++  G ++  +    +  G    ++ G    ++ ++    P      +         +  
Sbjct: 377  VNDEGIIQMANLGAEQLFGYRRDELPGRAYGELLELAQAVPPQD--GVTPEGAETRLQGV 434

Query: 149  LWPIEGTNLYVPIDLAALPIYSRNREF-SGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                +G+  +  I L+ +        F    R   +V             +R     S +
Sbjct: 435  GIRRDGSRFFTGITLSGMA----QGRFGRHTRRLLVVRDEHEQRLAEMAHERSLALLSAI 490

Query: 208  HEIKKGHSS-------------------VEKEKYDIFSQQSPPPH------LRMKNKVSS 242
              +     +                      E   I  +             R   + + 
Sbjct: 491  SGVTSLLLANRARLHVFTRLLALFLEFCHAAEGGLIVVEPDADGGQRFRFLARQGCRDTL 550

Query: 243  LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302
              +        L       +  E  + P +                    Q+   ++ + 
Sbjct: 551  AWDVLLDSLSELLATADGDMELEMGAAPWRLMPVRQEQRLMALVCLKAPDQDAMAQAQDA 610

Query: 303  LSHR------------NHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFL 349
            L                  +                   P+    +     +  AN +  
Sbjct: 611  LLAAFASIMGFYAEENRRKASEQRLRAVLQEEEAVYAASPVGLLRIDEDFRILRANHAAE 670

Query: 350  LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY--RSDRTCIAASARLHTIQWNR 407
             L            GGL  L     ++D     P+     R+             ++ N 
Sbjct: 671  QLFGTAR-------GGLLPLHLFELVADQQIWIPLGQALCRAREQGDRVQYEAECLRSNG 723

Query: 408  ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME-------IEVMQLCSILEA 460
                 +                      +  + ++ +  ++           QL   +E+
Sbjct: 724  MPVWVLIEGQALH--GESVQGGMILACLDITERKLAEFALQQARDEAAESRHQLLGAIES 781

Query: 461  TSDGIAIINREGIILSTNRAVSKLF--GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
             S+   +      +L  N+  + L   G   + +L   F     ++T   +         
Sbjct: 782  ISEAFVLYGPHDQLLLCNQRFADLVSEGQSSDALLGISF-----EDTVRALLQRGERPEP 836

Query: 519  LDLRQTLEKITLGSTKEE--------KLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570
                       +   ++              +I  +++P          +I+  KQ++ +
Sbjct: 837  GFDAVQWLAERVHRHRQGASSFSLQLGEAWWQINERQIP-GRGTVGVWANITALKQQEAE 895

Query: 571  LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
            L  A + A+  +  KS FLA +SHEIRTP+  ++G  E++         +P   +  + I
Sbjct: 896  LIEACRQADSANHAKSAFLAAMSHEIRTPMNGVLGMVELLALTPL----DPEQHDAVDTI 951

Query: 631  DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
              S   +L +++D+LD SKIE+G+++L  E  S+   V++   L    A  K +   T  
Sbjct: 952  QESAKTLLRLIDDILDFSKIEAGRLDLAPEATSVAGIVAQVHGLYLENARRKGLWFTTWV 1011

Query: 691  ANNI-PRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSN--EEVILRVRDTGV 746
               + P +L D   ++QI  N +SNA+ FT  G  ++ +S        + +   V DTG+
Sbjct: 1012 DERVAPCLLLDSLRLRQILQNFVSNALKFTQQGSVEMRVSLLAEDELAQTLRFDVVDTGI 1071

Query: 747  GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
            GMT   + +  +PF Q  +    R  GTGLGL + + +     G   + S P +G+   +
Sbjct: 1072 GMTRDTVARLFEPFTQAESDTTRRFGGTGLGLAICRRLARLMGGDVSLDSEPGQGSCATL 1131

Query: 807  IF 808
              
Sbjct: 1132 TL 1133



 Score = 73.1 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 61/451 (13%), Positives = 123/451 (27%), Gaps = 24/451 (5%)

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               EGT   + +  +  P      E    R  G   +    +    L    D+      
Sbjct: 66  FLEREGTQTRLLLVRSQPPGRYEAPELQRLRQQGDRALAEALHSVEVLEGTRDRANLVAI 125

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
             +  H +  + + D +      P    ++   S      H  + +  E           
Sbjct: 126 RQRYDHLAKLRTEIDRY--LQHHPGRADESLAFSWQLASNHLFESIDAELANHSYRLGDD 183

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
             E +             +     +  +      L  R + S  A            ++ 
Sbjct: 184 DNELQSRLAGVKFDAWLLRRAIGSEGAALLMRLELKRRLNSSDEADLASQRERGLLMLEL 243

Query: 329 CPIPFFVYSHG----NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN-NAIKP 383
                     G     L   N +   L +  +    E+ G  ++L  +    +       
Sbjct: 244 LQSNIRYLGPGALSQRLTKLNAATYQLFRMSNAQLAELQGAAASLPVSGVYVEAIRRAHD 303

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
            +L+ SD     A + L   +      L +T +    A      +    +       R  
Sbjct: 304 EVLFLSDDASRLAESTLEAHRQALYRELQLTVLASLLAFALYAALLFAVMRRILRPLRRL 363

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
           ++           +L+AT D I  +N EGII   N    +LFGY  +++  + +   LE 
Sbjct: 364 QQ-----------VLDATRDAILTVNDEGIIQMANLGAEQLFGYRRDELPGRAYGELLEL 412

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR---IIIKKLPFSSCYSLTMHD 560
                       +        L+ + +          +    +   +    +   L + D
Sbjct: 413 AQAVPPQD---GVTPEGAETRLQGVGIRRDGSRFFTGITLSGMAQGRFGRHTRRLLVVRD 469

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
             E +  +     +  +    S   S  LA 
Sbjct: 470 EHEQRLAEMAHERSLALLSAISGVTSLLLAN 500



 Score = 47.7 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 41/389 (10%), Positives = 104/389 (26%), Gaps = 27/389 (6%)

Query: 88   NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD--ILHIDPNNHIGDLLKRQNTWYG 145
             ID    +   +    +  G     ++ + L ++     + I     +    ++ +    
Sbjct: 655  RIDEDFRILRANHAAEQLFGTARGGLLPLHLFELVADQQIWIPLGQALCRAREQGDRVQY 714

Query: 146  KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
            +       G  + V + +    ++  + +  G                    ++   + +
Sbjct: 715  EAECLRSNG--MPVWVLIEGQALHGESVQ-GGM--ILACLDITERKLAEFALQQARDEAA 769

Query: 206  HLHEIKKGHSSVEKEKYDIFSQQSPPPH--LRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
                   G      E + ++           R  + VS      A      +     LL 
Sbjct: 770  ESRHQLLGAIESISEAFVLYGPHDQLLLCNQRFADLVSEGQSSDALLGISFEDTVRALLQ 829

Query: 264  SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF-----EYLSHRNHPSLSAYFDEG 318
              E   P  +    +    +  +Q   +      E++       +  R    + A     
Sbjct: 830  RGERPEPGFDAVQWLAERVHRHRQGASSFSLQLGEAWWQINERQIPGRGTVGVWANITAL 889

Query: 319  ENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD------- 371
            +    E ++ C          +  +A  +FL    ++    +    G+  LL        
Sbjct: 890  KQQEAELIEACRQA------DSANHAKSAFLAAMSHEIRTPMNGVLGMVELLALTPLDPE 943

Query: 372  APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
                 D        L R     +  S            + ++  I  +    + EN  + 
Sbjct: 944  QHDAVDTIQESAKTLLRLIDDILDFSKIEAGRLDLAPEATSVAGIVAQVHGLYLENARRK 1003

Query: 432  GIEPEDVDTRINKRKMEIEVMQLCSILEA 460
            G+             + ++ ++L  IL+ 
Sbjct: 1004 GLWFTTWVDERVAPCLLLDSLRLRQILQN 1032


>gi|289432115|ref|YP_003461988.1| multi-sensor signal transduction histidine kinase [Dehalococcoides
           sp. GT]
 gi|288945835|gb|ADC73532.1| multi-sensor signal transduction histidine kinase [Dehalococcoides
           sp. GT]
          Length = 581

 Score =  330 bits (846), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 96/464 (20%), Positives = 186/464 (40%), Gaps = 29/464 (6%)

Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
            +        +       +   +    +    A   + ++ +              +   
Sbjct: 147 AVARVALPVEEVYAAVREVDRTILLGAVISILAAGLLAVWVAASVTRPVKELTAISRRIA 206

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
           +  +    I      +  E      +  E +   I  + +  E   L ++LE   DGI +
Sbjct: 207 QGQMDTIQIDVSGKGEIEELAKAFRLMTERLRDSI--KAVSSERDYLSAVLERMGDGIFL 264

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
           ++REG I   N A  ++F      ++   F   +  +  + +        S   ++    
Sbjct: 265 LDREGSINLLNHASERIFKLEAGGVIGHSFVEAIRDHEINAV---FERAKSSGKQEMGFV 321

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
                    K   L II   L   S Y + + D+SE ++ +                + D
Sbjct: 322 ELTA----GKRF-LGIIATPLVSQSGYLVLVQDLSELRRLE--------------KVRRD 362

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           F+A +SHE+RTP+T++   +E ++              + + I    + +  +V +L D+
Sbjct: 363 FVANISHELRTPITSLKLLTETLQEG--AASDPDVAAGFIDKIHLEVDKLAQLVTELSDL 420

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707
           S IESG+  L+ +P  +  A+  A   +   A    I +       +P++  D   V+Q+
Sbjct: 421 SAIESGQAVLNLQPGDIRTAIKLAAERLSPQAERAGITLGVELPETLPQVRLDENRVEQV 480

Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
            +N++ NAI FTP GG+I I    T ++ +++ V D+G+G+   +L +  + F ++  S+
Sbjct: 481 LVNLVHNAIKFTPKGGKIKIGVR-TQSQTLVVYVTDSGIGIPEDDLTRVFERFYKVDKSR 539

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
              G GTGLGL ++K +V A+ G  +  S   KG       PL 
Sbjct: 540 S--GGGTGLGLAISKHIVQAHGGSIWAESVYGKGATFSFSLPLA 581



 Score = 42.7 bits (99), Expect = 0.29,   Method: Composition-based stats.
 Identities = 30/244 (12%), Positives = 64/244 (26%), Gaps = 17/244 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + +D  G +  ++    +     A  +IG    +         ++ I  + +R  +  G
Sbjct: 262 IFLLDREGSINLLNHASERIFKLEAGGVIGHSFVEAI------RDHEINAVFERAKS-SG 314

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           K  +  +E T     + + A P+ S++          +V           + +      S
Sbjct: 315 KQEMGFVELTAGKRFLGIIATPLVSQSGYLV------LVQDLSELRRLEKVRRDFVANIS 368

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
           H          +  E     +   P       +K+    +  A     L TE   L   E
Sbjct: 369 HELRTPITSLKLLTETLQEGAASDPDVAAGFIDKIHLEVDKLAQ----LVTELSDLSAIE 424

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
                       I        +        +  +         P +    +  E +    
Sbjct: 425 SGQAVLNLQPGDIRTAIKLAAERLSPQAERAGITLGVELPETLPQVRLDENRVEQVLVNL 484

Query: 326 VDKC 329
           V   
Sbjct: 485 VHNA 488


>gi|168700125|ref|ZP_02732402.1| PAS/PAC sensor signal transduction histidine kinase [Gemmata
            obscuriglobus UQM 2246]
          Length = 1656

 Score =  330 bits (846), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 88/788 (11%), Positives = 218/788 (27%), Gaps = 81/788 (10%)

Query: 86   TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD----LLKRQN 141
             WN DA G +   +            +       +       D            +    
Sbjct: 860  VWNADAGGAVTYFNRRWTDYAALPVDQERRSDWTEALHPDDRDRVYRAWRDTVVQVAPGG 919

Query: 142  TWYG-KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
            +    +        T  Y      A+P+   +      +  G +             ++ 
Sbjct: 920  SDRFFQEFRLRHAATGAYRWFQSVAVPLRHPDGTVD--QWIGSMADIDDQKTAVERVRQS 977

Query: 201  DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
            +     + +       V      +         L   + +  +      +   +   +  
Sbjct: 978  EAFRRSVFDNSPDCLKVFDLDGRLLEMNEAGCRLMELDDLEPIRGNLWAEMWPVANREVI 1037

Query: 261  LLTSEESSLPEQEDFHT----INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
                  +   +   F                    L     +    L      +     +
Sbjct: 1038 GEAVAAARDGQVGRFQGFCPTAKGTPKYWDVSVAPLPGADGKPDRLLGVSRDITEQRRAE 1097

Query: 317  EGENLTPETVDKCPIPF-----FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
            E    + E   +             + G++F+ N  +   T       +E   G      
Sbjct: 1098 ERIRESEELFRQMAESIPQLAWMTDAEGHIFWYNQRWYDYTGTT----LEEMKGWGWQAV 1153

Query: 372  APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
                     ++      +             ++                 +Q    +   
Sbjct: 1154 QDPDELPRVVERWRAALAAGEHWE---DTFPLRGRDGKFRWFLSRARPIRDQVGNIIRWF 1210

Query: 432  GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
            G   +    R  ++ +     +  ++ E     +     +G +   NR  +   G  +E 
Sbjct: 1211 GTNTDVSAQRELEQTLRASEERFRTLTETVPQIVWTAEPKGAVTFFNRRWTDYTGVELEA 1270

Query: 492  ILRKPFT-VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
                 +    L  +    +       ++        +  L    +            L  
Sbjct: 1271 GRGSVWGGDLLHPDDADRVRVGWQLAVARGGGGYSSEFRLRRADDGAYRWFLSNALPLRD 1330

Query: 551  SSC----YSLTMHDISEWKQ--------------------------------EKNKLSHA 574
             +     +  T+ DI + K+                                 +++    
Sbjct: 1331 QNGNVEEWVGTLTDIDDQKRQTETLEAMVRERTLALELANVALTEEIEVRQAAEDQARAV 1390

Query: 575  KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
                E+ +     F    SH+++ PL  I  F + +  +    L + +  EY + +  + 
Sbjct: 1391 AVELERSNGELEKFAYVASHDLQEPLRKIQAFGDRLVTKCRAELSD-KGKEYLDRMQVAA 1449

Query: 635  NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
              +  +++DLL  S++ + +    F  + L + VSE +S + +   +    ++      +
Sbjct: 1450 ARMRRLIDDLLQFSRVTTQQRP--FRRLDLQKLVSEVVSDLDVRIGQANGAVQV---GPL 1504

Query: 695  PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV-------------ILRV 741
            P + AD   ++Q+  N+++NA+ F   G   ++  T     +V              + V
Sbjct: 1505 PAVDADPTQMRQLFQNLIANAVKFQRPGVPPVVQITGELAAQVPLNNEGAEPISVCRITV 1564

Query: 742  RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            RD G+G  +   ++  + F ++    +   EGTG+GL + + +V+ + G         +G
Sbjct: 1565 RDNGIGFDDKYRDRIFEVFQRLHG--RDEYEGTGVGLAICRKIVERHGGAIEAHGISGEG 1622

Query: 802  TLIEIIFP 809
                ++ P
Sbjct: 1623 ATFVVVLP 1630



 Score =  174 bits (440), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 53/538 (9%), Positives = 133/538 (24%), Gaps = 30/538 (5%)

Query: 65   TNYLDSENTFVFDPIPRTVR-FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD 123
                  ++   F  + + V    W   A+GY +  ++      G    + +G        
Sbjct: 712  AVEAVRDSEARFRTLAQAVPHIIWVTRANGYHEYYNQRWYDYTGLTEEQSLGDGWSGPLH 771

Query: 124  ILHIDPNNHIGDLLKRQNTWYGKTTLWPIEG-TNLYVPIDLAALPIYSRNREFSGFRGFG 182
                       +  +   T       +   G    Y      ALP    +      R +G
Sbjct: 772  PDDRARAAARWE--QSTATGAEYEIEYRFRGADGRYRWFLGRALPQRDADGRIV--RWYG 827

Query: 183  IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS-----PPPHLRMK 237
                   +       +R ++++  L E              +              +  +
Sbjct: 828  TCTDIHEERMATEALRRNEERYRTLTEAVPHIVWNADAGGAVTYFNRRWTDYAALPVDQE 887

Query: 238  NKVSSLTEYYAHKDDVLKTEK-----YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL 292
             +       +    D +                +    E    H         +     L
Sbjct: 888  RRSDWTEALHPDDRDRVYRAWRDTVVQVAPGGSDRFFQEFRLRHAATGAYRWFQSVAVPL 947

Query: 293  QNNSKESFEYLSHRNHPSLSAYFDEGENLTPE----TVDKCPIPFFVYS-HGNLFYANPS 347
            ++      +++             E    +        D  P    V+   G L   N +
Sbjct: 948  RHPDGTVDQWIGSMADIDDQKTAVERVRQSEAFRRSVFDNSPDCLKVFDLDGRLLEMNEA 1007

Query: 348  FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
               L +   ++ I              +++   I   +    D                 
Sbjct: 1008 GCRLMELDDLEPIRGNLWAEM----WPVANREVIGEAVAAARDGQVGRFQG-FCPTAKGT 1062

Query: 408  ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
                 ++  P   A+  P+     G+  +  + R  + ++         + E+      +
Sbjct: 1063 PKYWDVSVAPLPGADGKPD--RLLGVSRDITEQRRAEERIRESEELFRQMAESIPQLAWM 1120

Query: 468  INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
             + EG I   N+      G  +E++    +    + +    +       L+         
Sbjct: 1121 TDAEGHIFWYNQRWYDYTGTTLEEMKGWGWQAVQDPDELPRVVERWRAALAAGEHWEDTF 1180

Query: 528  ITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
               G   + +    R    +    +   +  T  D+S  ++ +  L  +++     + 
Sbjct: 1181 PLRGRDGKFRWFLSRARPIRDQVGNIIRWFGTNTDVSAQRELEQTLRASEERFRTLTE 1238



 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 43/529 (8%), Positives = 124/529 (23%), Gaps = 29/529 (5%)

Query: 86   TWNIDAHGYLKEISEELPKTI---GNYAF-----------KMIGMRLCDVSDILHIDPNN 131
             W +D  G   ++           G +                G              ++
Sbjct: 594  VWTLDESGRWLDLQASAGAFTPDQGPHERVRVGETKIGRIAASGHPYLTDDVPNDPLTSD 653

Query: 132  HIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN 191
                  +   ++ G   +  ++G    V    +   +        G     +        
Sbjct: 654  PEWAGREGIRSFAGHPLV--VDGRVFGVLGVYSRTKLSEGLVTDLGPIAANLAQFIDRRK 711

Query: 192  DPRALGKRLDKKFSHLHEIKKGHSSVEKE-KYDIFSQQSPPPHLRMKNKVS---SLTEYY 247
               A+ +  + +F  L +       V +   Y  +  Q    +  +  + S     +   
Sbjct: 712  AVEAV-RDSEARFRTLAQAVPHIIWVTRANGYHEYYNQRWYDYTGLTEEQSLGDGWSGPL 770

Query: 248  AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
               D      ++   T+  +    +  F   +             ++       +     
Sbjct: 771  HPDDRARAAARWEQSTATGAEYEIEYRFRGADGRYRWFLGRALPQRDADGRIVRWYGTCT 830

Query: 308  HPSLSAYFDEGENLTPE----TVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEI 362
                     E      E      +  P   +   + G + Y N  +        VD    
Sbjct: 831  DIHEERMATEALRRNEERYRTLTEAVPHIVWNADAGGAVTYFNRRWTD-YAALPVDQERR 889

Query: 363  AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
            +     L    +     A +  ++  +                          +     +
Sbjct: 890  SDWTEALHPDDRDRVYRAWRDTVVQVAPGGSDRFFQEFRLRHAATGAYRWFQSVAVPLRH 949

Query: 423  QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
                     G   +  D +    ++        S+ + + D + + + +G +L  N A  
Sbjct: 950  PDGTVDQWIGSMADIDDQKTAVERVRQSEAFRRSVFDNSPDCLKVFDLDGRLLEMNEAGC 1009

Query: 483  KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
            +L      + +R      +       +                +     +    K   + 
Sbjct: 1010 RLMELDDLEPIRGNLWAEMWPVANREVIGEAVAAARDGQVGRFQGFCPTAKGTPKYWDVS 1069

Query: 543  IIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
            +                  DI+E ++ + ++  ++++  + +       
Sbjct: 1070 VAPLPGADGKPDRLLGVSRDITEQRRAEERIRESEELFRQMAESIPQLA 1118



 Score =  128 bits (323), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 54/545 (9%), Positives = 125/545 (22%), Gaps = 71/545 (13%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D  G +   +    + +G    + +G +     +        H   LL+ +        
Sbjct: 447 VDGAGAIVRANRAELEMLGYDRTEFVGHKAEAFYEEPGAGRELH-ARLLRGERLTNHPAR 505

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           L   +GT     + ++A  +   N  F   R F                    +  +   
Sbjct: 506 LRCKDGT--VRDVLISATALV-ENGSFVHARCF--TRDVTEQKRAADDLAERARAIALRA 560

Query: 209 EIKKGHS---------------------------SVEKEKYDIFSQQSPPPHLRMKNKVS 241
           ++  G +                               E       Q+            
Sbjct: 561 DVAAGLAGAAETRSALQGCAETLARALGAALARVWTLDESGRWLDLQASAGAFTPDQGPH 620

Query: 242 SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY------------------ 283
                   K   +    +P LT +  + P   D                           
Sbjct: 621 ERVRVGETKIGRIAASGHPYLTDDVPNDPLTSDPEWAGREGIRSFAGHPLVVDGRVFGVL 680

Query: 284 ---TKKQYFGTLQNNSKESFEYLSHRNHPS-LSAYFDEGENLTPETVDKCPIPFFVYSH- 338
              ++ +    L  +       L+             + E          P   +V    
Sbjct: 681 GVYSRTKLSEGLVTDLGPIAANLAQFIDRRKAVEAVRDSEARFRTLAQAVPHIIWVTRAN 740

Query: 339 GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398
           G   Y N  +   T       +   G    L    +       +      +         
Sbjct: 741 GYHEYYNQRWYDYTGLTEEQSL-GDGWSGPLHPDDRARAAARWEQST---ATGAEYEIEY 796

Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458
           R    +               + +     +   G   +  + R+    +     +  ++ 
Sbjct: 797 RF---RGADGRYRWFLGRALPQRDADGRIVRWYGTCTDIHEERMATEALRRNEERYRTLT 853

Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP----SVMNHYLT 514
           EA    +   +  G +   NR  +     PV+   R  +T  L  +            + 
Sbjct: 854 EAVPHIVWNADAGGAVTYFNRRWTDYAALPVDQERRSDWTEALHPDDRDRVYRAWRDTVV 913

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNK 570
           ++      +  ++  L           + +   L         +  +M DI + K    +
Sbjct: 914 QVAPGGSDRFFQEFRLRHAATGAYRWFQSVAVPLRHPDGTVDQWIGSMADIDDQKTAVER 973

Query: 571 LSHAK 575
           +  ++
Sbjct: 974 VRQSE 978



 Score =  105 bits (262), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 48/542 (8%), Positives = 117/542 (21%), Gaps = 54/542 (9%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG---K 146
           D     + ++  + +  G    + +G  + +V               +            
Sbjct: 321 DPELRYERVNSFIARANGKPVSEHLGRTVTEVV-PDVPAERVERYRAVATGAAESYSDTV 379

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
               PI G      +   A P+        G     +VH            +R ++  + 
Sbjct: 380 DVRHPITGALQAFHVT--AFPVRLPGGPTLGAG--VVVHEITEQRRAEQELRRSERNLTD 435

Query: 207 LHEIKK-GHSSVEKEKYDIFSQQSPPPHLRMKN-KVSSLTEYYAHKDDVLKTEKYPLLTS 264
             E    G   V+     + + ++    L     +         +++     E +  L  
Sbjct: 436 FFENANVGLHWVDGAGAIVRANRAELEMLGYDRTEFVGHKAEAFYEEPGAGRELHARLLR 495

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
            E            +            L  N          R+        D+       
Sbjct: 496 GERLTNHPARLRCKDGTVRDVLISATALVENGSFVHARCFTRDVTEQKRAADDLAERARA 555

Query: 325 TVDKCPIPFFVYSHGNLFYANPSFLL-------------LTKYKSVDDIEIAGGLSTLLD 371
              +  +   +        A                    T  +S   +++         
Sbjct: 556 IALRADVAAGLAGAAETRSALQGCAETLARALGAALARVWTLDESGRWLDLQASAGAFTP 615

Query: 372 APKLSDNNAIKPVMLYR-----------------------SDRTCIAASARLHTIQWNRE 408
                +   +    + R                               S   H +  +  
Sbjct: 616 DQGPHERVRVGETKIGRIAASGHPYLTDDVPNDPLTSDPEWAGREGIRSFAGHPLVVDGR 675

Query: 409 NSLAMTFIPFEKANQF--PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
               +      K ++    +  P      + +D R     +     +  ++ +A    I 
Sbjct: 676 VFGVLGVYSRTKLSEGLVTDLGPIAANLAQFIDRRKAVEAVRDSEARFRTLAQAVPHIIW 735

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
           +    G     N+      G   E  L   ++  L  +  +       +  +       E
Sbjct: 736 VTRANGYHEYYNQRWYDYTGLTEEQSLGDGWSGPLHPDDRARAAARWEQSTATGAE--YE 793

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKES 582
                   + +             +    +    T  DI E +     L   ++     +
Sbjct: 794 IEYRFRGADGRYRWFLGRALPQRDADGRIVRWYGTCTDIHEERMATEALRRNEERYRTLT 853

Query: 583 SH 584
             
Sbjct: 854 EA 855



 Score = 98.2 bits (243), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 34/318 (10%), Positives = 87/318 (27%), Gaps = 18/318 (5%)

Query: 280 LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG 339
                ++     ++    E+       +  +  A  DE        ++   +    +   
Sbjct: 264 ALGRQEELESEVVRRRVVEAALRQREADLVAAQARADEALARLDAFIENANVGIVFFDPE 323

Query: 340 -NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398
                 N            + +    G +     P +      +      +     + S 
Sbjct: 324 LRYERVNSFIARANGKPVSEHL----GRTVTEVVPDVPAERVER--YRAVATGAAESYSD 377

Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458
            +           A     F         +    +  E  + R  ++++      L    
Sbjct: 378 TVDVRHPITGALQAFHVTAFPVRLPGGPTLGAGVVVHEITEQRRAEQELRRSERNLTDFF 437

Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
           E  + G+  ++  G I+  NRA  ++ GY   + +      F     P         +L 
Sbjct: 438 ENANVGLHWVDGAGAIVRANRAELEMLGYDRTEFVGHKAEAFY--EEPGAGRELHARLLR 495

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS---LTMHDISEWKQEKNKLSHAK 575
            +  +          K+  +  + I    L  +  +        D++E K+  + L    
Sbjct: 496 GE--RLTNHPARLRCKDGTVRDVLISATALVENGSFVHARCFTRDVTEQKRAADDL---- 549

Query: 576 KIAEKESSHKSDFLARVS 593
               +  + ++D  A ++
Sbjct: 550 AERARAIALRADVAAGLA 567


>gi|186473973|ref|YP_001861315.1| multi-sensor hybrid histidine kinase [Burkholderia phymatum STM815]
 gi|184196305|gb|ACC74269.1| multi-sensor hybrid histidine kinase [Burkholderia phymatum STM815]
          Length = 939

 Score =  330 bits (846), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 117/703 (16%), Positives = 240/703 (34%), Gaps = 66/703 (9%)

Query: 163 LAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKY 222
           + A  IYS        R      + R+ +        L  +   L   +       ++ +
Sbjct: 27  VGATTIYSLAGSAHSIRQLAEERLTRLADAQELAQHTLTIERLALQLSRDETVEAVRQTH 86

Query: 223 DIFSQQSPPPHLRMKNKVSSLTEYYAHKD-DVLKTEKYPLLTSEESSLPEQEDFHTINLN 281
                Q       + +   +        D   L                 +E    +   
Sbjct: 87  GQVLDQLASFDRLVDHLAPASASNDPGVDVLALYRSSQRFRNIVNIEAQVRETALAVRAA 146

Query: 282 QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNL 341
             + +Q       +  E     +     +     D         V+              
Sbjct: 147 PASARQ-PRVSLASLDEDLRRAADALAAAAREQSDSSTRGYRVAVENLAD---------- 195

Query: 342 FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401
            YA+ +   +    +V  +         L    ++    +   + +       A      
Sbjct: 196 -YADRTRTWIAGEVAVSLLLAWLIAREFLGRHVVARLRRVSHFLRHGDAGNEQAVPVHGG 254

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENM--------------------PQNGIEPEDVDTR 441
               +   ++        +     + +                       G   E  + +
Sbjct: 255 DEIADMARAVEDFLEDRRRRRLAEDALKELNAGLEARVAQRTAELTAALAGQAAEIAERQ 314

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILRKPFTVF 500
             +  +      L SI+E   D + +        +  N+A   L GY  E+++ +     
Sbjct: 315 HAEEAVRESEHFLNSIIENIPDMVFVKEAATLRFVRFNKAAEDLLGYRREELIGQSVHDL 374

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL-SLRIIIKKLPFSSCYS-LTM 558
              +           +L       + +  + +    +L+ +++I I  +     +     
Sbjct: 375 FPADEADFFALKDRAVLESRQMIDVPEEPVHTRHGLRLVHTMKIPILDVRGEPQFLLGIS 434

Query: 559 HDISEWKQEKNKLSHAKKI------------------AEKESSHKSDFLARVSHEIRTPL 600
            DI+E K  + +L   ++                   A+  +  KSDFLA +SHE+RTPL
Sbjct: 435 RDITEHKHAEEELRRYREHLEDMIRERTAELAIAKEHADAANQAKSDFLAHMSHELRTPL 494

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
             I+G+++++K  +     + R ++    I RSG  +L +++D+LD++KIE+G+M L+F 
Sbjct: 495 NGILGYAQILKRDKN---LDRRQVDGLMVIQRSGEHLLTLIDDILDMAKIEAGRMELNFS 551

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFT 719
            V L   +   +  +++ A EK +      A ++P  +  D   ++Q+ LN++SNAI FT
Sbjct: 552 DVPLARFIHFIVETMRVKATEKGLEFACEMAPDLPAGVRVDEIRLRQVLLNLISNAIRFT 611

Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
             G  + +         +   VRDTG+G+    LE   +PF Q+ +++     GTGLGL 
Sbjct: 612 EQGS-VRLRVGFMPPTRLCFEVRDTGIGIEEARLEAIFRPFEQVSDARYRS-GGTGLGLA 669

Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIF------PLYDTSHP 816
           +++ +V     + ++ S    G+            PL     P
Sbjct: 670 ISRELVRLMGSEIHVESHHGTGSAFSFELNVQLLAPLSTVVAP 712



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/255 (12%), Positives = 74/255 (29%), Gaps = 22/255 (8%)

Query: 11  EDILTSNCKGNTQDLSKKKIDNGFETEKSKKENPC----HDSFEQSNFTDQNQESVSNTN 66
           ED L    +    + + K+++ G E   +++             +       +E+V  + 
Sbjct: 265 EDFLEDRRRRRLAEDALKELNAGLEARVAQRTAELTAALAGQAAEIAERQHAEEAVRESE 324

Query: 67  Y-----LDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV 121
           +     +++    VF     T+RF             ++     +G    ++IG  + D+
Sbjct: 325 HFLNSIIENIPDMVFVKEAATLRFV-------RF---NKAAEDLLGYRREELIGQSVHDL 374

Query: 122 SDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF 181
                 D        +             P+   +    +    +PI     E     G 
Sbjct: 375 FPADEADFFALKDRAVLESRQMIDVPEE-PVHTRHGLRLVHTMKIPILDVRGEPQFLLG- 432

Query: 182 GIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS 241
            I              +R  +    +   +    ++ KE  D  +Q        M +++ 
Sbjct: 433 -ISRDITEHKHAEEELRRYREHLEDMIRERTAELAIAKEHADAANQAKSDFLAHMSHELR 491

Query: 242 SLTEYYAHKDDVLKT 256
           +          +LK 
Sbjct: 492 TPLNGILGYAQILKR 506


>gi|329851899|ref|ZP_08266580.1| sensory box protein [Asticcacaulis biprosthecum C19]
 gi|328839748|gb|EGF89321.1| sensory box protein [Asticcacaulis biprosthecum C19]
          Length = 873

 Score =  330 bits (845), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 123/742 (16%), Positives = 263/742 (35%), Gaps = 42/742 (5%)

Query: 105 TIGNYAFKMIGMRLCDVSD-ILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDL 163
             G    ++ G+ L  +     +    +H+   L    + +       +   N+ VP+  
Sbjct: 1   MAGKATHELTGVSLRRLLTRPSNFVMGSHVLPPLALTGSVHEVELDI-VGPDNINVPVTA 59

Query: 164 AALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYD 223
           +A+    +N        F      R       L K L  +     ++ +  + V     D
Sbjct: 60  SAM-RRLKNGASVDMFSFMPAKGRRGFTQEFLLAKSLLDRRQAYLDLAEKLAKVGHWHVD 118

Query: 224 IFSQQS-----------PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ 272
           + + QS             P     N    ++ Y+      +       L S+ +    +
Sbjct: 119 LKTTQSTWSPEVYAIHGCDPAGYQPNLDDGISFYHPDDRASVAGAIAEALESKATFSFRK 178

Query: 273 EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP----SLSAYFDEGENLTPETVDK 328
                   +            +++ ++              +     +E E       ++
Sbjct: 179 RLIRRDTGDVRIVDSVGLGEFDHAGQAVAIFGVFKDVTDLVAAQVKLEESEAQYRLLAER 238

Query: 329 CPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
                 ++   G   Y +PS   +  Y+    +  +   +  L   +  D          
Sbjct: 239 SNDIVALFDLEGTFQYLSPSIEEILGYRPDSFVGRS---TRDLIYAEDYDRTLAVFATYL 295

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM-PQNGIEPEDVDTRINKRK 446
           R          R + ++        M   P    +   + +     +  +  +T     +
Sbjct: 296 RERDWKRPLRVR-YRVRHANGALRWMEANPRPIFDAAADRIIGFQDVVRDVTETVEALER 354

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
           ++    +   + +     +A  +   +    NRA  + FG   E+++       +     
Sbjct: 355 IQASETRHRLLADHMPGMVAYWDNTLVCRFANRAYEEWFGRTAEEMIGLDMPSLMGPELF 414

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEW 564
           +    Y+   L+   +Q+ E+    +         + +  +        + + + DI+  
Sbjct: 415 ARNERYILGALA-GAQQSFERALTKANGATGYTWAQYLPDRDENGAVRGFYVLVTDITAL 473

Query: 565 KQEKNKLSHAKKIA-------EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
           K ++  L  A           E  +  K++FLA +SHEIRTPLT+IIGFS ++ +    P
Sbjct: 474 KTKELALEEANAALVVAREKAEVAAEAKANFLATMSHEIRTPLTSIIGFSGLMAD--LNP 531

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
            G+     Y+  I  +G+ +L ++N +LD +K+++G++ L     ++   + +   L+ +
Sbjct: 532 EGSENAR-YSQRIYSAGHNLLTLINGILDHAKMDAGQLRLKPTACNVASIIDDVTGLLTV 590

Query: 678 YANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIS---TTHTS 733
            A  K + +R   A+++P  +L D    +QI  N++ NAI FT  G  + +         
Sbjct: 591 QAKAKSLDLRVDVADDLPSAMLLDEIRFRQILQNLIGNAIKFTVKG-HVEVKAVPIASAE 649

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
              + + V DTG G++     +  K F Q+         GTGLGL + + +V+   G   
Sbjct: 650 GATLRIAVSDTGPGISLEGQAQLFKKFSQVDRKAGETQTGTGLGLLICRQLVELMDGAIN 709

Query: 794 IFSTPAKGTLIEIIFPLYDTSH 815
           + ST   GT   +  P+   + 
Sbjct: 710 VESTVGHGTSFIVDIPIKRDAE 731



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/387 (9%), Positives = 92/387 (23%), Gaps = 23/387 (5%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG-KTT 148
           D  G  + +S  + + +G      +G    D+      D    +     R+  W      
Sbjct: 247 DLEGTFQYLSPSIEEILGYRPDSFVGRSTRDLIYAEDYDRTLAVFATYLRERDWKRPLRV 306

Query: 149 LWPIE-GTNLYVPIDLAALPIYSRNR-EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
            + +         ++    PI+        GF+   +V       +     +  + +   
Sbjct: 307 RYRVRHANGALRWMEANPRPIFDAAADRIIGFQ--DVVRDVTETVEALERIQASETRHRL 364

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSP--PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
           L +   G  +                    R   ++  L        ++    +  +L +
Sbjct: 365 LADHMPGMVAYWDNTLVCRFANRAYEEWFGRTAEEMIGLDMPSLMGPELFARNERYILGA 424

Query: 265 EESSLPEQEDFHTINLNQYTKKQY-FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
              +    E   T            +   ++ +     +       +     +       
Sbjct: 425 LAGAQQSFERALTKANGATGYTWAQYLPDRDENGAVRGFYVLVTDITALKTKELALEEAN 484

Query: 324 ETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
             +                 A  +FL    ++    +    G S L+       +   + 
Sbjct: 485 AAL-----VVAREKAEVAAEAKANFLATMSHEIRTPLTSIIGFSGLMADLNPEGSENARY 539

Query: 384 VM---------LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
                      L   +     A      ++         + I         +   ++   
Sbjct: 540 SQRIYSAGHNLLTLINGILDHAKMDAGQLRLKPTACNVASIIDDVTGLLTVQAKAKSLDL 599

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEAT 461
             DV   +    +  E+ +   IL+  
Sbjct: 600 RVDVADDLPSAMLLDEI-RFRQILQNL 625


>gi|319653067|ref|ZP_08007170.1| hypothetical protein HMPREF1013_03785 [Bacillus sp. 2_A_57_CT2]
 gi|317395239|gb|EFV75974.1| hypothetical protein HMPREF1013_03785 [Bacillus sp. 2_A_57_CT2]
          Length = 718

 Score =  330 bits (845), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 94/504 (18%), Positives = 194/504 (38%), Gaps = 37/504 (7%)

Query: 313 AYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
              D   +     +D+  I       G + Y N  F+ ++KY+  + +    G +  +  
Sbjct: 241 EASDTNLHDIQAALDESSIVAITDPKGVITYVNDKFVEISKYEEHELL----GKNHNILN 296

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
                    + +              R         +   +        N+  +      
Sbjct: 297 SGFHPPEFFQDLWKTIGSGEIWKGEIRNKA---KDGSFYWVDTTIVPFLNKKNKPYQYVS 353

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSI---LEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
           I  +    +     ++  +  +  I   L+ +S  IA  + +G I + N    ++  Y  
Sbjct: 354 IRTDISALKSAAASLKSSLKDVNDIKFALDQSSI-IAFTDEKGTITNVNEKFCEISQYSR 412

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
           E+++ +  ++             L + +     +  +       K+     +   I    
Sbjct: 413 EELIGQNHSILNSGLHSKEFFKNLWKTIGQG--EVWKGEIRNKAKDGSYYWVHTTIVPFL 470

Query: 550 FSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
            ++     Y    +DI+E K+ +  L    K+A           A V+HEIR PLT + G
Sbjct: 471 NANGKPYQYLSIRNDITERKKTEEVLHQQDKLA-----AVGQLAAGVAHEIRNPLTTMKG 525

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
           ++E ++ +      +    EY + I    + V +IV D + ++K ++ ++    E   + 
Sbjct: 526 YTEFLQLEE----THEERQEYLSIILDEIDRVNNIVEDFMVLAKPKAAEL----EERDII 577

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725
             +   +S ++  A  + + I   +  +I +I  D   +KQ+ LN + N I   P GG I
Sbjct: 578 PIIKNVVSFLEFEARNRNVKIGFEYQQDIIQIECDENRLKQVLLNFIKNGIEAMPDGGNI 637

Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
            +      N +V + ++DTGVG+   +L+   +PF     +      G GLGL ++  ++
Sbjct: 638 TVRAGII-NNQVQIAIKDTGVGIPQEKLKNIGEPFFTTKKN------GNGLGLMVSFKII 690

Query: 786 DANMGKFYIFSTPAKGTLIEIIFP 809
           +++ GK +I S   KGT   I+ P
Sbjct: 691 ESHNGKVFIESELNKGTTFNIVLP 714



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/257 (10%), Positives = 74/257 (28%), Gaps = 17/257 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS---DILHIDPNNHIGDLLKRQNTWYG 145
            D  G +  ++++  +       +++G     ++          +  +   +     W G
Sbjct: 263 TDPKGVITYVNDKFVEISKYEEHELLGKNHNILNSGFHPPEFFQD--LWKTIGSGEIWKG 320

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +      +G+  +V   +  +P  ++  +   ++   I           A  K   K  +
Sbjct: 321 EIRNKAKDGSFYWVDTTI--VPFLNKKNKP--YQYVSIRTDISALKSAAASLKSSLKDVN 376

Query: 206 ----HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
                L +      + EK      +++        + ++        +     K     L
Sbjct: 377 DIKFALDQSSIIAFTDEKGTITNVNEKFCEISQYSREELIGQNHSILNSGLHSKEFFKNL 436

Query: 262 --LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
                +      +      + + Y          N + + ++YLS RN  +     +E  
Sbjct: 437 WKTIGQGEVWKGEIRNKAKDGSYYWVHTTIVPFLNANGKPYQYLSIRNDITERKKTEEVL 496

Query: 320 NLTPET--VDKCPIPFF 334
           +   +   V +      
Sbjct: 497 HQQDKLAAVGQLAAGVA 513


>gi|254560907|ref|YP_003068002.1| hypothetical protein METDI2463 [Methylobacterium extorquens DM4]
 gi|254268185|emb|CAX24095.1| hypothetical protein METDI2463 [Methylobacterium extorquens DM4]
          Length = 1125

 Score =  330 bits (845), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 124/732 (16%), Positives = 239/732 (32%), Gaps = 56/732 (7%)

Query: 123 DILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFG 182
             L + P   +G L    +     T        +L   +  A + +   N  F+  R   
Sbjct: 114 APLILRPGVRLGSLCLADSQPRDFTPEDAAALRDLAEIVT-AQMRLRRDNLAFASERALR 172

Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS- 241
            +H + +      + +R           +       +  +           LR+    + 
Sbjct: 173 QIHESTIRAQGVEIERRASANSLLTMAEQIAQVGHWRLNFASGQPIYSESLLRIAGLDAA 232

Query: 242 -------SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294
                   L +     D            +       +  F   +              +
Sbjct: 233 APTTRHPGLAQLCHPADRGRVEAIIAAAIAGGQDFEVETRFVRPDKTIRDVMVRGTCKTD 292

Query: 295 NSKESFEYLSH----RNHPSLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSF 348
            +  +           +   + A     E       D  P+  +      G   Y N  F
Sbjct: 293 EAGRTIGLFGILMDVTDRVQIRAEMRRSEMRYRSLADALPLLVWTVDPDSGEATYVNTRF 352

Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
                         A  +  L                  ++         RL     +  
Sbjct: 353 EDYYGP------IGAARVQRLARNHPDDAPAMEAAWQAAQASGQGYDGQWRLQA--RDGS 404

Query: 409 -NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
                ++  P   A          G   +  +    +  +E     L   LE    G   
Sbjct: 405 YRWHKLSITPIRNAGDPAGITEWIGTALDIDEIVSARLAVEDTSRLLGIALEGAEAGTFD 464

Query: 468 INREGIILSTNRAVSKLFGYP----VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
            N    I   +    +L+G P       +    +T  +  +      + +   +    R 
Sbjct: 465 WNLRTGITVLSPESVRLYGLPETGEPRALSPTEWTATIHPDDVVEAWNRIHHAVDSRSRF 524

Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSSCY--SLTMHDISEWKQEKNKLSHAKK----- 576
             E         ++ L              Y       DI+E K  +  L  A       
Sbjct: 525 IAEYRV-----GQRWLYTSGRTLYEGDGRPYRMLGLHLDITERKAAEAALRAATAEARAA 579

Query: 577 --IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
              AE+ S+ KS+FLA +SHEIRTPL  I+G+++++ ++R     +P        I  SG
Sbjct: 580 TVEAERASAAKSEFLAAMSHEIRTPLNGILGYADLLLDRRD---HDPEDQRRLELIRVSG 636

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
             +L +VND+LD+SKIE+G++ L   P +L + + + +++++  A +  + +      ++
Sbjct: 637 ESLLTVVNDVLDVSKIEAGQLELDPLPFALGKLIEDTVAIMRGTALKSALTVEARIDPDL 696

Query: 695 P-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN---------EEVILRVRDT 744
           P  ++ D   ++Q+  N+L+NA+ FTP+G  ++++  +  +         E +   + DT
Sbjct: 697 PVSVVGDANRLRQVLFNLLNNAVKFTPAGS-VVLTARYEGSVPGADGGTAEALRFEISDT 755

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G+   +  +  KPF Q+  S   R  G+GLGL +   +V    G   + S    G+  
Sbjct: 756 GIGIAPSQRHRLFKPFSQVDGSISRRFGGSGLGLAICHRLVTMMGGAIGVESREGAGSTF 815

Query: 805 EIIFPLYDTSHP 816
                L   + P
Sbjct: 816 WFTLALPRATTP 827


>gi|75907937|ref|YP_322233.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
 gi|75701662|gb|ABA21338.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
          Length = 628

 Score =  330 bits (845), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 104/489 (21%), Positives = 190/489 (38%), Gaps = 45/489 (9%)

Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
            DIE       L            +      S R       R++ +              
Sbjct: 15  ADIEGKTIWEALPPETSSEVELPYRQAFAGISSRFEAPYGHRVYEVH------------V 62

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
               N   E      I  E  + + ++  ++  +  L   ++ T   +   +    +   
Sbjct: 63  LPVRNDDGEIFAGMTITQEITERKQSELALQDALQLLNLHIDTTPLAVVQWDCHLCVTRW 122

Query: 478 NRAVSKLFGYPVEDILRKPF--TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
           +    K+FG+  E+++ K F     + +   + +      +LS    Q ++      TK+
Sbjct: 123 SSTAEKIFGWRTEEVIGKYFQDLHMVYEEDMTAVAEASNRLLSGQESQIIQY-NRNYTKD 181

Query: 536 EKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHA----------------- 574
            +++        +   +         + D++E  Q +  L  +                 
Sbjct: 182 SRVIYCEWYNSSITNEAGSVTSVLSLVLDVTERIQAEKALRQSELMVIEERAQALERERA 241

Query: 575 -KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
            +   E+ S  K +FLA VSHE+R+PL  I+G+S +++ ++  P    +  +    I+R+
Sbjct: 242 ARIELERASRMKDEFLAIVSHELRSPLNGILGWSRLLRTRKLSP---EKIEQALESIERN 298

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693
                 ++ DLLDIS+I  G + L   P  L   +  A+  V+  AN K I I +    +
Sbjct: 299 AQAQTQLIEDLLDISRIIRGNIRLLVRPTKLIPVIQAALDTVRPIANTKSIQIISRLNFD 358

Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753
           I  + AD   ++Q+  N+LSNA+ FTP GG++ I         V +RV DTG G++   L
Sbjct: 359 IGLVSADPERLQQVIWNLLSNAVKFTPEGGRVEICLEQVETN-VQIRVTDTGKGISPEFL 417

Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFPL-- 810
                 F Q   +      G GLGL + + +V+ + G   + S    +G    +  PL  
Sbjct: 418 PYVFDRFRQADATTTRNQGGLGLGLAIVRNLVELHNGTVSVASPGEGQGATFTVQLPLLP 477

Query: 811 -YDTSHPHD 818
            Y T  P +
Sbjct: 478 SYSTVTPEE 486


>gi|302036227|ref|YP_003796549.1| putative phosphate regulon sensor histidine kinase PhoR [Candidatus
           Nitrospira defluvii]
 gi|300604291|emb|CBK40623.1| putative Phosphate regulon sensor histidine kinase PhoR [Candidatus
           Nitrospira defluvii]
          Length = 619

 Score =  330 bits (845), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 98/644 (15%), Positives = 231/644 (35%), Gaps = 69/644 (10%)

Query: 180 GFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK 239
           G+ ++           L +  +   +           +  +             +R  ++
Sbjct: 25  GWLVIRSVEQT----ELSRMAETLETSSGLAAMTLRPLFDQSGSTVPGSLLHATVRDLSQ 80

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
            + L      +D  +         S   +       + ++  +  +    G   +     
Sbjct: 81  QAHLRITVIRQDGTVVA------DSAVPTEGLAHVENHLSRPEVAQALRSGRGMDIRASQ 134

Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDD 359
                      L +     +   P      P+         + +             +  
Sbjct: 135 TTGERTYYVARLLSASTPAQPSIPVIRLGLPLTSI---DERVRHIQQDLATAFGAAFLLA 191

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
           + ++  +S  L  P      A + +                          + +      
Sbjct: 192 MTLSLWVSRNLTKPLSEMAAAARQLA--------------------GGTPGVRLVVSST- 230

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
             ++            + ++T+I  +++  +  QL ++L A  +G+ +++  G ++  N 
Sbjct: 231 --DEVGLLAQTLNEMTDQLETKI--KEVSDDRAQLLAMLIAMVEGVMVLDYRGTVVQVNP 286

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
           A+ ++F   + +   + +   +     + +   + +  S    +      +  +   + L
Sbjct: 287 ALERMFSLELTESRGRHYAELIRHEGLTALVSSVLQTRSGQGGE------ITLSPSGRCL 340

Query: 540 SLRIII--KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
            +   I        +C     HDI+E ++ +                + DF+A VSHE+R
Sbjct: 341 RVEASIAGGSREQEACAVFVFHDITELRRLE--------------KIRKDFVANVSHELR 386

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TPLT+I G+ E + +   G         +   I R  N +  I++DLL +S+IESG++  
Sbjct: 387 TPLTSIKGYVEALLDG--GKDEPATATAFLEIIMRQSNRLNLILDDLLQLSQIESGQVLF 444

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
             EPV L   +   +++++  A++K   I  S  +    +  D   + Q+ +N+L NA+ 
Sbjct: 445 RREPVDLRALLERTVAVIKPLADKKHHTIELSLPDEYWVVEGDEERLVQVFINLLENAVK 504

Query: 718 FTPSGGQIIISTT-------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           +TP  G+I ++          T    + + V D+G+G+   +  +  + F ++  ++   
Sbjct: 505 YTPDQGRISMAIRNATHMRAATPRPMIEIVVADSGIGIPEADRPRVFERFYRVDKARSRE 564

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
             GTGLGL + K +V+A+ G+ ++     +G+   +  P+   S
Sbjct: 565 LGGTGLGLAIVKHIVEAHSGQVWVEGNTPRGSRFVVHLPVAQDS 608



 Score = 42.7 bits (99), Expect = 0.24,   Method: Composition-based stats.
 Identities = 30/357 (8%), Positives = 88/357 (24%), Gaps = 17/357 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D  G + +++  L +       +  G    ++     +     +  +L+ + +  G   
Sbjct: 275 LDYRGTVVQVNPALERMFSLELTESRGRHYAELIRHEGLTA--LVSSVLQTR-SGQGGEI 331

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                G  L V   +A       +RE      F + H            +RL+K      
Sbjct: 332 TLSPSGRCLRVEASIAG-----GSREQEACAVF-VFHDITE-------LRRLEKIRKDFV 378

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
                           + +             ++  E    + + L      LL   +  
Sbjct: 379 ANVSHELRTPLTSIKGYVEALLDGGKDEPATATAFLEIIMRQSNRLNLILDDLLQLSQIE 438

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
             +          +   ++    ++  + +    +             + E L    ++ 
Sbjct: 439 SGQVLFRREPVDLRALLERTVAVIKPLADKKHHTIELSLPDEYWVVEGDEERLVQVFINL 498

Query: 329 CPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
                 +    G +  A  +   +        IEI    S +            +   + 
Sbjct: 499 LENAVKYTPDQGRISMAIRNATHMRAATPRPMIEIVVADSGIGIPEADRPRVFERFYRVD 558

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
           ++    +  +     I  +   + +          +    +    +  +       +
Sbjct: 559 KARSRELGGTGLGLAIVKHIVEAHSGQVWVEGNTPRGSRFVVHLPVAQDSSTAVSTE 615


>gi|332968095|gb|EGK07182.1| phosphate regulon sensor histidine kinase protein PhoR [Desmospora
           sp. 8437]
          Length = 585

 Score =  330 bits (845), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 104/586 (17%), Positives = 221/586 (37%), Gaps = 44/586 (7%)

Query: 234 LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293
               + ++   E            +                 H+++       +    L 
Sbjct: 33  ASTIDSLTERLEKEGRLLAEAVNREELWKKPALLQQQADRFGHSLDARVTLIDKKGEVLG 92

Query: 294 NNSKESFEYLSHRNHPS-LSAYFDEGENLTPETVDKCPIPFFVYSHGN--------LFYA 344
           ++++      + + HP+   A   + +       +   +  F+   G         +   
Sbjct: 93  DSARLPRGTENMKKHPAVARALSPDSKGKAGSIREDARLDVFLPVVGGKEREKVLGVVRL 152

Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
           +     + +  S   + +AGGL        +  +   + +     + T +A     + + 
Sbjct: 153 SMELERIDQRLSQVWVSLAGGLLFSFALASMISSRVARNITRPIEEMTRVAVDMARNKLH 212

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
                            N+         I       R     +     +L  ++E    G
Sbjct: 213 RR-----------IPVNNRDEIGRLATAINRMAAGLRYQLETIRKSERRLTGVIETMDSG 261

Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
           + +++ +G I   N+A  + F      +L K        +    +N  + + +    R  
Sbjct: 262 LIMVDSKGKITLANQAFHRFFNLKPRQLLHKSLPEGAIFHD---LNRLVRKCMESGER-- 316

Query: 525 LEKITLGSTKEEKLLSLRIIIK-KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
           +         EE+++  R+    +    +     +H+I+  ++ +               
Sbjct: 317 VRDEIHLYFPEERIMEARLTPIWEERGETGVMAVIHEITAIRRLE--------------K 362

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
            +++F+A VSHE++TP+T++ GF+E + +            E+   I      +  ++ D
Sbjct: 363 MRTEFVANVSHELKTPVTSLRGFAETLLDG--AAEDPDMRKEFLEIIQAESLRLERLIAD 420

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703
           LLD+SKIES  M L  + + + E +      V+    ++++  R       P +  D   
Sbjct: 421 LLDLSKIESRNMPLDIQTIGIGELLRSTAKTVEEQMRKRKLSFRVKSEEEFP-VQVDPDR 479

Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
             QI LN+LSNA+ +TP+GG++I+S      +   +RV DTG+G+   +L +  + F ++
Sbjct: 480 FSQILLNLLSNAMTYTPAGGEVILSAGRGETDWW-IRVADTGIGIPGEDLPRIFERFYRV 538

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             ++     GTGLGL + K +V+A+ G+  + S   KGT I + FP
Sbjct: 539 DKARSRESGGTGLGLAIVKHLVEAHQGEIQVTSRAGKGTEITLTFP 584


>gi|327482207|gb|AEA85517.1| two-component hybrid sensor and regulator [Pseudomonas stutzeri DSM
            4166]
          Length = 1388

 Score =  330 bits (845), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 122/738 (16%), Positives = 247/738 (33%), Gaps = 72/738 (9%)

Query: 89   IDAHGYLKEISEE---LPKTIGNYAFKMIGMRLCDVSDI-LHIDPNNHIGDLLKRQNTWY 144
            ++    +  +S+      + +G        + L  +    L ++    +        +  
Sbjct: 568  VNQEAEIVHMSDRAGNFLRYVGGEPS----LNLTTLVHPQLRLELRTALYQAAHTGKSVE 623

Query: 145  GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
             +      +G + YV +                     +V   R                
Sbjct: 624  ARRVRLERDGRSYYVNM---------------------VVRPFRD--------------- 647

Query: 205  SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS-SLTEYYAHKDDVLKTEKYPLLT 263
               +E    +  V  ++ +     S       K+ V   L     H  + L+       T
Sbjct: 648  ---NEAGSDYMLVLFDEVEACMDSSTLEDPDTKDSVLTQLEAELQHTKERLQITMEHSET 704

Query: 264  SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG--ENL 321
            S E      E+   IN    +  +   T +   +   E L+  N+   S   +     + 
Sbjct: 705  STEELRASNEELQAINEELRSATEELETSKEELQSINEELTTVNYELKSKVDETSKINDD 764

Query: 322  TPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
                +    I   FV     + +  P    +      D       ++  LD P L+ + A
Sbjct: 765  LQNLISSTDIATVFVDRKMRIKWFTPRARDIFNVIGNDAGRSLFDITHRLDYPLLAKDAA 824

Query: 381  IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
                 L+  +R              +RE                           +  D 
Sbjct: 825  EAFEELHLVEREV-----------RDREGQHWYLARFLPYRTLDDRIEGAVLTFIDITDR 873

Query: 441  RINKRKMEIEVMQLCSILEAT-SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
            R  + ++      L  + ++T    I  ++ +G+I + N     + GY   ++L +   +
Sbjct: 874  RRAEEELRAGEAHLKLLAQSTKGYAIITLDCDGLITTWNCGAELILGYRETEVLGQTVDI 933

Query: 500  FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL--- 556
               +              +L   Q  +     + ++     L  ++  L   +   +   
Sbjct: 934  IYTEQDRQAGVPEAERQRALQHGQATD-ERWHARRDGSRCFLSGLLNPLVDGTGKVIGFA 992

Query: 557  -TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
                D++E +Q  ++  +  +  +  +  K  F A +SHE++ PL  I   ++ +  +  
Sbjct: 993  KIARDLTEERQRSSEQQNELESVQAANLQKDQFFAVLSHELKHPLNLIQLNTD-LVARSQ 1051

Query: 616  GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
                NP   +    I  +      I++DL+D+S+I +GK+ LHF  +   + +    ++ 
Sbjct: 1052 AVKNNPSLHKATQSIQNAVRSQSRIIDDLMDVSRIRTGKLKLHFATLRYQDVLRGIEAVF 1111

Query: 676  QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
               A  + I   +   +    I AD   + QI  N+L+NA  FT  G +I +       +
Sbjct: 1112 APLAQSENISFESFKPDAPIYIQADPTRLDQIIWNLLNNAWKFTKGGQRICMQLE-REGD 1170

Query: 736  EVILRVRDTGVGMTNYELEKAMKPFGQIP-NSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
            +  L V DTG G++   L K    FGQ      Q    G G+GL L K +V+A+ G+   
Sbjct: 1171 QARLDVIDTGEGISADFLPKVFDMFGQAEMQHAQRAKHGLGIGLALVKQLVEAHNGRIEA 1230

Query: 795  FST-PAKGTLIEIIFPLY 811
            +S    +G    +  P++
Sbjct: 1231 YSEGIGRGARFSVWLPVH 1248


>gi|323528784|ref|YP_004230936.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1001]
 gi|323385786|gb|ADX57876.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1001]
          Length = 941

 Score =  330 bits (845), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 123/652 (18%), Positives = 242/652 (37%), Gaps = 53/652 (8%)

Query: 181 FGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV 240
             +V                   F  L +     ++ E    D  +        R    +
Sbjct: 79  VDVVRETHRHVIEELAT------FDRLVDRLAAATTSEGVSVDALALHRSSQRFRNTVNI 132

Query: 241 SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF 300
            +     A +   +         S  S   E +     +      +Q       + +++ 
Sbjct: 133 EAQVRETALRAGSMPGATPEARGSPASGSLEDDLRRQADALAAAARQQADYFTRDYRQAV 192

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH--GNLFYANPSFLLLTKYKSVD 358
           + L+     +       GE      +       F+  H  G L   +  FL      S  
Sbjct: 193 QDLADNADRTRKWVT--GEVAVSLLLAWLIAHAFLGRHVVGRLRRVS-HFLRHGDVDSAQ 249

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
                 G   + D  +  +          ++++     +A L                  
Sbjct: 250 AGVPVRGGDEIADMARAVEQFLEDRRQRRQAEQALKELNAELEA---------------R 294

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILST 477
                   +    G+  E V+ +  +         L SI+E   D I + +      +  
Sbjct: 295 VTQRTAELSTALAGLTAEIVERQHAEEAARASEHFLDSIIENIPDTIFVKDAATLRFVRF 354

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
           N+A  +L GY  E+++ K        +          ++L       +    + +    +
Sbjct: 355 NKAGEQLLGYRREELIGKSVHDLFPPSEAEFYALKDRDVLKSQQLVDVPDEPVHTRYGVR 414

Query: 538 LL-SLRIIIKKLPFSSCYS-LTMHDISEWKQEKNKLSHAKKI------------------ 577
           LL +++I I  +     +      DI+E ++ +++L   ++                   
Sbjct: 415 LLHTMKIPIVDVRGEPQFLLGISRDITEQRRAEDELRRYREHLEDMIRERTAELAVAKEH 474

Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
           A+  +  KSDFLA +SHE+RTPL  I+G++++++  +       R  +    I RSG  +
Sbjct: 475 ADAANQAKSDFLAHMSHELRTPLNGILGYAQILRRDKN---LEQRQADGIAVIQRSGEHL 531

Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR- 696
           L I+ND+LD++KIE+GK++L+   V L+  +      ++L A EK +      A  +P  
Sbjct: 532 LAIINDILDMAKIEAGKVDLYLSDVLLERFIYFIAGTIRLKATEKGLAFSCDMAPGLPAA 591

Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKA 756
           +  D + ++Q+ LN+LSNAI FT +G  + +    T    +   V+DTG+G+     E  
Sbjct: 592 VRVDEKRLRQVLLNLLSNAIKFTETGS-VCLRVDWTPPTRLRFEVQDTGIGIEEAHRETI 650

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            +PF Q+ +++     GTGLGL +++ +V    G+ ++ S    G++     
Sbjct: 651 FRPFEQVSDARHRV-GGTGLGLAISRQLVRLMGGEIHVESRRGGGSIFRFEL 701



 Score = 47.3 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/166 (10%), Positives = 45/166 (27%), Gaps = 3/166 (1%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150
           A       ++   + +G    ++IG  + D+      +        + +           
Sbjct: 347 ATLRFVRFNKAGEQLLGYRREELIGKSVHDLFPPSEAEFYALKDRDVLKSQQLVDVPDEP 406

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
                 + +   +  +PI     E     G  I              +R  +    +   
Sbjct: 407 VHTRYGVRLLHTMK-IPIVDVRGEPQFLLG--ISRDITEQRRAEDELRRYREHLEDMIRE 463

Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256
           +    +V KE  D  +Q        M +++ +          +L+ 
Sbjct: 464 RTAELAVAKEHADAANQAKSDFLAHMSHELRTPLNGILGYAQILRR 509


>gi|302875422|ref|YP_003844055.1| multi-sensor hybrid histidine kinase [Clostridium cellulovorans
           743B]
 gi|307689020|ref|ZP_07631466.1| multi-sensor hybrid histidine kinase [Clostridium cellulovorans
           743B]
 gi|302578279|gb|ADL52291.1| multi-sensor hybrid histidine kinase [Clostridium cellulovorans
           743B]
          Length = 949

 Score =  330 bits (845), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 91/398 (22%), Positives = 180/398 (45%), Gaps = 13/398 (3%)

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL-EATSDGIAIINREGIIL 475
           P     +  + +         +  R+ + K    ++   +IL +     I  ++      
Sbjct: 156 PITWEAERIKTLKYISRAFSYLKERLIREKAYESILDGQAILLDNAQSQIWALSNVTSYA 215

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
           + N   +K FG    ++  + F    + +T + ++    ++   +     E        E
Sbjct: 216 TVNETHAKFFGKNKVELEYQDFYDVFDIDTANALSQLSWDLFEKNELAEKELEINNYKGE 275

Query: 536 EKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
           ++LL+++ I ++    +      T  DI++ +  + +L  AK+ AE  +  KS FLA +S
Sbjct: 276 KRLLNVKGIPQRDTIGNIKYIICTAVDITKQRSAEAQLYKAKEEAEAANIAKSKFLANMS 335

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
            EIRTP+  I GF E+++             E+      +  ++L I+ND+LD+SKIE+ 
Sbjct: 336 REIRTPMNGIFGFLELLELTNLSS----EQKEFIREAKSASEVLLHIINDILDLSKIEAR 391

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNIL 712
           K+ +     +L +A+ + +SL+   A EK + +      ++P  ++ D   ++QI  N++
Sbjct: 392 KLIMENISFNLRDAIEDTVSLLAPKAAEKGLELYVRIKEDVPEEVIGDPSRLRQILNNLI 451

Query: 713 SNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
            NA+ FT  G  + IS  +   +     V   V DTG+G+   ++ K  + F Q   S  
Sbjct: 452 YNAVKFTEKG-YVSISMDYLEKDHEIALVNFEVEDTGIGIATEDIPKVFEAFNQADASTT 510

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
            +  GTGLGLP++  ++    G   + S   +G+  + 
Sbjct: 511 RKYGGTGLGLPISYELIKMMGGDIRVESKLGEGSTFKF 548


>gi|304407983|ref|ZP_07389633.1| multi-sensor hybrid histidine kinase [Paenibacillus curdlanolyticus
           YK9]
 gi|304343002|gb|EFM08846.1| multi-sensor hybrid histidine kinase [Paenibacillus curdlanolyticus
           YK9]
          Length = 1091

 Score =  330 bits (845), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 112/408 (27%), Positives = 181/408 (44%), Gaps = 24/408 (5%)

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
              ++  T  P     +        G   +  + +  +RKM     +  S+ E   D I 
Sbjct: 277 GGTNVWATLEPII---EDGVVTAIIGGVVDISERKAAERKMIESEERYRSLAENPQDCIL 333

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
            +++EG IL  N    K+ G   E    +           S  N +L E  +   +   E
Sbjct: 334 ELDQEGRILFANSYFCKIAGIGPELAADQHLFGLKLIVNESQWNKHLNETATSGKKSRFE 393

Query: 527 KITLGSTKEEK--LLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
              +          ++L  I   +  S     +MH+I+E KQ   +           +  
Sbjct: 394 TSIVLMDGRVSEYYVTLSEIKGPMESSKSMICSMHEITELKQADQE-----------NRA 442

Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
           KS FLARVSHEIRTPL  IIG ++++++            +YA+ I  S +L+L I+ D+
Sbjct: 443 KSRFLARVSHEIRTPLNGIIGMTQLMQHTEL----TDTQQDYAHKILSSSHLLLGIITDI 498

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRS 703
           LD+SKIE+GK+N+      +DE + E  S V +    K+I +       +P  ++ D   
Sbjct: 499 LDLSKIEAGKLNMEQLEFQIDELLYELTSTVGVLKGIKQIEVILESEAGLPDKVIGDPLR 558

Query: 704 VKQIALNILSNAIHFTPSGGQ-IIISTTHTSNE--EVILRVRDTGVGMTNYELEKAMKPF 760
           +KQI +N+ SNAI FT  G   + +      N    +   VRDTG+GMT  +++   +PF
Sbjct: 559 LKQILMNLCSNAIKFTEHGHVLVRVERVIEMNGIVRLRFTVRDTGIGMTEDQIDMLYEPF 618

Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            Q   +   +  GTGLGLP+ K +V    G+  + S+P  G+      
Sbjct: 619 WQAEYASASKLAGTGLGLPIVKELVQLLGGELQVESSPGIGSCFCFEL 666


>gi|229824433|ref|ZP_04450502.1| hypothetical protein GCWU000282_01756 [Catonella morbi ATCC 51271]
 gi|229786034|gb|EEP22148.1| hypothetical protein GCWU000282_01756 [Catonella morbi ATCC 51271]
          Length = 616

 Score =  330 bits (845), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 88/455 (19%), Positives = 183/455 (40%), Gaps = 33/455 (7%)

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS-ARLHTIQWNRENSLAMTFIPFE 419
           E    + ++     +        + L  S    +     R   ++ +      +   P +
Sbjct: 176 EQTQSVMSVFIQSAVIAIVGSFILALVLSQGLTMPIENMRQQALRISEG----IYNYPAK 231

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
                        +    V  + ++  +E E  +L  IL   +DG+   +R G +L  N 
Sbjct: 232 IFGNDELGELAKTLNELSVKVKDSQELIESERQRLDGILRYMTDGVIATDRRGNVLLVNE 291

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
              +L G   +  +       L       +   L +   + +             E    
Sbjct: 292 RALQLLGIDQQSAIGISIIRLLRLKDQYTLTDLLGDDREILMDWVDHGEYSILKGE---- 347

Query: 540 SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
              +I ++  F +     + D++E ++ + +              + DF++ VSHE+RTP
Sbjct: 348 -FSVIRRETGFVTGVVCVLTDVTEQEKTEQE--------------RRDFVSNVSHELRTP 392

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
           LT+I  ++E ++    G   +     ++ N I    + ++ ++ +LLD+SKI  G+  L+
Sbjct: 393 LTSIKSYTEALRE---GAWQDEVIAPQFLNVIQLETDRMMRMIGNLLDLSKIHEGQYKLN 449

Query: 659 FEPVSLDEAVSEAISLVQLYANE----KRILIRTSFANNIPRILADLRSVKQIALNILSN 714
            E +     VS  +   +    +    K+  ++  F +    +  D   V Q+  NIL+N
Sbjct: 450 LEYIDFKRMVSHILDRFEFMLEQNPDQKKFKLKRDFTSREIYLEIDQDRVTQVIDNILNN 509

Query: 715 AIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           AI ++P GG I++     S+  V L ++D G+G+   ++    + F ++  ++     GT
Sbjct: 510 AIKYSPDGGVIVVKIE-DSHSHVHLSIKDQGLGIPQKDIPHLFQRFYRVDKARSREQGGT 568

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GLGL ++K +++ + GK +  S   KG+      P
Sbjct: 569 GLGLAISKEIIELHGGKIWATSVEGKGSTFGFDLP 603


>gi|258510676|ref|YP_003184110.1| signal transduction histidine kinase with CheB and CheR activity
            [Alicyclobacillus acidocaldarius subsp. acidocaldarius
            DSM 446]
 gi|257477402|gb|ACV57721.1| signal transduction histidine kinase with CheB and CheR activity
            [Alicyclobacillus acidocaldarius subsp. acidocaldarius
            DSM 446]
          Length = 1215

 Score =  330 bits (845), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 109/628 (17%), Positives = 219/628 (34%), Gaps = 51/628 (8%)

Query: 189  VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK--NKVSSLTEY 246
               D   +   + +    L+  +     + +E   + +       +      +V  L   
Sbjct: 612  DSPDSATVTLVIRQLSDRLNRFRSHALVMFREPEPLEAVVYAGDDVSSTVSQRVIELERE 671

Query: 247  YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
                 + L+     L TS E      E+    N    +  +   ++              
Sbjct: 672  LQMYQEKLQVTVEELETSNEELQATNEEIVAANEELQSTNEELHSVNEELLTINAEYQLN 731

Query: 307  NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
                     D    L    +       F+     +    P+         +D       +
Sbjct: 732  IQQLTELTNDLDNFLASTEIGTL----FLERELKVKRFTPALTKEFHLLDIDVGRPITHI 787

Query: 367  STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
            S  L+  ++ D+          ++   I       +  W      A+  +P+    Q   
Sbjct: 788  SHRLEYDEMIDDAKS-----VLANGEPIEREVHSKSGAW-----YAVRVLPYHTPEQA-- 835

Query: 427  NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
                     +    +    ++     +L   +E +   + I + EG I   N       G
Sbjct: 836  VKGVVFTFVDITKIKKMNEELR----KLSYAVEQSPSIVVITDTEGRIEYVNPKFCACTG 891

Query: 487  YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
              VE+ L +      E    ++    +   L    R T         K+  L   ++ I 
Sbjct: 892  SSVEEALGRHLRDLNEWAEQNLSFDDVWSNLQAGERWTG--EVPSRRKDGTLYWEQLSIV 949

Query: 547  KLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
             +   +     Y     D++E++  +  L        +  S   +  A ++HEIR PLTA
Sbjct: 950  PILDETGRIIHYLKVAEDVTEFRYTEELL-----RKSEMLSAVGELAAGIAHEIRNPLTA 1004

Query: 603  IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
            + GF+++I +             Y   +    + +  IVN+LL +SK ++    +H +  
Sbjct: 1005 LKGFTKLILSGSHSDS-------YLEIMRGELDRIETIVNELLVLSKPQA----VHIQRR 1053

Query: 663  SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
            +  + + + + L++  A    + I     +    IL     +KQ+ +N+L NAI   P+G
Sbjct: 1054 NFADILRDVVMLLETQALLTHVDIELRIPDEPIEILCVENQLKQVFINLLKNAIEAMPNG 1113

Query: 723  GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
            G I ++      + V++RVRD GVG+   +++K  +PF    +      +GTGLGL ++ 
Sbjct: 1114 GTIEVTVE-RDGDHVVIRVRDEGVGIPQDKMKKLGEPFYTTKD------KGTGLGLMVSF 1166

Query: 783  AMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             +V+ + G     S   +GT + +  PL
Sbjct: 1167 KIVEQHGGIIRYESKEGEGTTVTVRLPL 1194



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 22/260 (8%), Positives = 65/260 (25%), Gaps = 11/260 (4%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV--SDILHIDPNNHIGDLLKRQNTWYGK 146
             D  G ++ ++ +     G+   + +G  L D+      ++  ++ +   L+    W G+
Sbjct: 873  TDTEGRIEYVNPKFCACTGSSVEEALGRHLRDLNEWAEQNLSFDD-VWSNLQAGERWTGE 931

Query: 147  TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                  +GT       L+ +PI         +    +            L ++ +   + 
Sbjct: 932  VPSRRKDGTLY--WEQLSIVPILDETGRIIHYLK--VAEDVTEFRYTEELLRKSEMLSAV 987

Query: 207  LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
                      +      +             +    +      + + +  E   L   + 
Sbjct: 988  GELAAGIAHEIRNPLTALKGFTKLILSGSHSDSYLEIMRGELDRIETIVNELLVLSKPQA 1047

Query: 267  SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
              +  +     +       +        + +              +       NL    +
Sbjct: 1048 VHIQRRNFADILRDVVMLLETQALLTHVDIELRIPDEPIEILCVENQLKQVFINLLKNAI 1107

Query: 327  DKCPIP----FFVYSHGNLF 342
            +  P        V   G+  
Sbjct: 1108 EAMPNGGTIEVTVERDGDHV 1127


>gi|332530052|ref|ZP_08406002.1| putative hybrid sensor and regulator [Hylemonella gracilis ATCC
           19624]
 gi|332040525|gb|EGI76901.1| putative hybrid sensor and regulator [Hylemonella gracilis ATCC
           19624]
          Length = 1320

 Score =  330 bits (845), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 110/657 (16%), Positives = 243/657 (36%), Gaps = 38/657 (5%)

Query: 182 GIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEK------EKYDIFSQQSPPPHLR 235
           G++   R + D   + +R  +  + +         V         + ++    S P   +
Sbjct: 120 GMLTQARENVDALLVHQRAARGDAEVRRAVTSLVEVPDNLEPGIAEVEMLVSVSDPLLFQ 179

Query: 236 MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN 295
                   T  + +   +        + +      E    H +     + ++     ++ 
Sbjct: 180 WTAIARLATALHDYAGQMASVFTAAFVGNRPLLPQEMARIHYLRGAIESLRRELSLQRDR 239

Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV---YSHGNLFYANPSFLLLT 352
             +     +     ++    +         + +          Y    +  A+     L 
Sbjct: 240 VMDQGGVEAESFQTAVRKVDELFMQEGMNLLRELETTGRTSGNYGMNAVTLASEYGPRLD 299

Query: 353 KYKSV------------DDIEIAGGLSTLL-DAPKLSDNNAIKPVMLYRSDRTCIAASAR 399
               +            D ++       LL           +  + +    R  I     
Sbjct: 300 AIAELGNIAIQGVHGRIDALDARNRRELLLTVVLAAFALLLLLGMYVLMRMRLSIPLDQV 359

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN-KRKMEIEVMQLCSIL 458
              ++        +        ++  + +   G   E    R+  +++++    +  +IL
Sbjct: 360 TQALEQIARGDQRVHLPRARWRDEIGQVLGALGSLQEATQARLAAEQEIKNAKDEQDAIL 419

Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK-PFTVFLEQNTPSVMNHYLTEIL 517
            A   GI ++ +   ++  +    ++F      +L       ++ +     +   L   L
Sbjct: 420 NAADIGIVLL-KNRTVVRCSAGFERMFRVEPGSMLGHATREWYVNEEDYREVGEVLYAEL 478

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRII---IKKLPFSSCYSLTMHDISEWKQEKNKLSHA 574
           + D +    +      ++       +    I            + DI+E K+ + +L  A
Sbjct: 479 AEDRQNR--RELTLRRRDGTHFEAVLRGRAIDPNDLGRGSVWVIADITERKRMEGELRVA 536

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
           +  A++ +  KSDFLA +SHEIRTP+ AIIG S ++         + R  +Y   I ++G
Sbjct: 537 RDRAQEAAQAKSDFLANMSHEIRTPMNAIIGLSHLLLKTEL----SQRQHDYLRKIQQAG 592

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
             +L ++ND+LD+SKIE+GK+ +      L++A+S   +L+   A+ K + +    A ++
Sbjct: 593 QHLLGVINDILDLSKIEAGKLVIEHTEFQLEKALSNVANLIAEKAHAKGLELIFDIAPDV 652

Query: 695 PR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMTN 750
           P+ ++ D   + QI +N  +NA+ FT  G   + I     ++ +V+L   V DTG+G++ 
Sbjct: 653 PQRLVGDSLRLGQILINYANNAVKFTERGEVTVQIRVRERTDHDVLLYCAVHDTGIGLSV 712

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
            + ++  + F Q  NS      GTGLGL ++  + +   G   + S   +G+     
Sbjct: 713 EQQKRLFQSFQQADNSTTREYGGTGLGLSISLELAERMGGTVGVSSQLGRGSTFWFT 769


>gi|147668883|ref|YP_001213701.1| PAS/PAC sensor signal transduction histidine kinase
           [Dehalococcoides sp. BAV1]
 gi|146269831|gb|ABQ16823.1| PAS/PAC sensor signal transduction histidine kinase
           [Dehalococcoides sp. BAV1]
          Length = 581

 Score =  330 bits (845), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 96/464 (20%), Positives = 187/464 (40%), Gaps = 29/464 (6%)

Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
            +        +       +   +    +    A   + ++ +              +   
Sbjct: 147 AVARVALPVEEVYAAVREVDRTILLGAVISILAAGLLAVWVAASVTRPVKELTAISRRIA 206

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
           +  +    I      +  E      +  E +   I  + +  E   L ++LE   DGI +
Sbjct: 207 QGQMDTIQIDVSGKGEMEELAKAFRLMTERLRDSI--KAVSSERDHLSAVLERMGDGIFL 264

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
           ++REG I   N A  ++F      ++   F   +  +  + +        S   ++    
Sbjct: 265 LDREGSINLLNHASERIFKLEAGGVIGHSFVEAIRDHEINAV---FERAKSSGKQEMGFV 321

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
                    K   L II   L   S Y + + D+SE ++ +                + D
Sbjct: 322 ELTA----GKRF-LGIIATPLVSQSGYLVLVQDLSELRRLE--------------KVRRD 362

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           F+A +SHE+RTP+T++   +E ++              + + I    + +  +V +L D+
Sbjct: 363 FVANISHELRTPITSLKLLTETLQEG--AASDPDVAAGFIDKIHLEVDKLAQLVTELSDL 420

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707
           S IESG+  L+ +P  +  A+  A   +   A    I++       +P++  D   V+Q+
Sbjct: 421 SAIESGQAVLNLQPGDIRTAIKLAAERLSPQAERAGIILGVELPETLPQVRLDENRVEQV 480

Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
            +N++ NAI FTP GG+I I    T ++ +++ V D+G+G+   +L +  + F ++  S+
Sbjct: 481 LVNLVHNAIKFTPKGGKIKIGVR-TQSQTLVVYVTDSGIGIPEDDLTRVFERFYKVDKSR 539

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
              G GTGLGL ++K +V A+ G  +  S   KG       PL 
Sbjct: 540 S--GGGTGLGLAISKHIVQAHGGSIWAESVYGKGATFSFSLPLA 581



 Score = 42.7 bits (99), Expect = 0.27,   Method: Composition-based stats.
 Identities = 30/244 (12%), Positives = 63/244 (25%), Gaps = 17/244 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + +D  G +  ++    +     A  +IG    +         ++ I  + +R  +  G
Sbjct: 262 IFLLDREGSINLLNHASERIFKLEAGGVIGHSFVEAI------RDHEINAVFERAKS-SG 314

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           K  +  +E T     + + A P+ S++          +V           + +      S
Sbjct: 315 KQEMGFVELTAGKRFLGIIATPLVSQSGYLV------LVQDLSELRRLEKVRRDFVANIS 368

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
           H          +  E     +   P       +K+    +  A     L TE   L   E
Sbjct: 369 HELRTPITSLKLLTETLQEGAASDPDVAAGFIDKIHLEVDKLAQ----LVTELSDLSAIE 424

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
                       I        +        +            P +    +  E +    
Sbjct: 425 SGQAVLNLQPGDIRTAIKLAAERLSPQAERAGIILGVELPETLPQVRLDENRVEQVLVNL 484

Query: 326 VDKC 329
           V   
Sbjct: 485 VHNA 488


>gi|189346602|ref|YP_001943131.1| multi-sensor hybrid histidine kinase [Chlorobium limicola DSM 245]
 gi|189340749|gb|ACD90152.1| multi-sensor hybrid histidine kinase [Chlorobium limicola DSM 245]
          Length = 887

 Score =  330 bits (845), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 97/361 (26%), Positives = 165/361 (45%), Gaps = 21/361 (5%)

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           + +   DG+ +I++E  I   N A   +      DI  KP    L Q             
Sbjct: 248 VYDKMPDGVFVIDQEERITDCNNAALNILEITKNDI-GKPAAKILRQWPELYGLIIEARE 306

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHA 574
           +     +  +   +          + I+         +   + + +I+  KQ +  L   
Sbjct: 307 IKHADLKKQKLDLV------SWFDIDILALPDKNGCLTGRIIVLRNITSRKQIEYDLIAT 360

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
           ++ AE  +  KSDF+A +SHEIRTPL  +IGFS ++         +     Y N ++ S 
Sbjct: 361 REKAEAANHAKSDFIANMSHEIRTPLNGLIGFSSLLMKTTL----DDVQFHYINTVNNSA 416

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
             +L ++ND+LD+SKIE+GK+ L+ E +SL E   E I +    A+ K + +     +++
Sbjct: 417 KQLLGLINDILDLSKIEAGKLELYNEMISLQELAEEVIDMTAFTAHSKNLELLLDIPSSL 476

Query: 695 PR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE------VILRVRDTGVG 747
           P   LAD   +KQI +N+L NA+ FT SGG+I +      ++        I  VRDTG+G
Sbjct: 477 PESALADPVCLKQILINLLGNAVKFT-SGGEIELKIETVPSDNDPDYLVFIFSVRDTGIG 535

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           ++    +K  + F Q   S   +  GTGLGL ++  ++        + S+P +G+     
Sbjct: 536 ISPENRKKIFEAFSQEDMSTTRKYGGTGLGLTISNKLLLLMGSCLQLESSPGQGSRFFFS 595

Query: 808 F 808
            
Sbjct: 596 L 596


>gi|16126740|ref|NP_421304.1| sensory box histidine kinase/response regulator [Caulobacter
           crescentus CB15]
 gi|221235523|ref|YP_002517960.1| PAS-family sensor histidine kinase [Caulobacter crescentus NA1000]
 gi|13424056|gb|AAK24472.1| sensory box histidine kinase/response regulator [Caulobacter
           crescentus CB15]
 gi|220964696|gb|ACL96052.1| PAS-family sensor histidine kinase [Caulobacter crescentus NA1000]
          Length = 637

 Score =  330 bits (845), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 102/410 (24%), Positives = 183/410 (44%), Gaps = 13/410 (3%)

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL-EATSDGIAII 468
           +  +            E       + + ++          EV +L  +L +  +D +A+ 
Sbjct: 91  AYWLAGQRLRLETMHAELKASLDAKQDAIEDAEVALAKYREVDRLYRLLGDNLTDHVALW 150

Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528
           +  G  L ++ ++ ++ GY +E+ +  P    + +     +   +  +       + +  
Sbjct: 151 SPLGERLYSSPSIERITGYTLEEFMALPPAALVGEADFRRVQGIIRSLEPGGEPVSADYE 210

Query: 529 TLGSTKEEKLLSLRIIIKKLPFSSCYSLTM-HDISEWKQEKNKLSHAKKIAEKESSHKSD 587
           +L   K+   + +      L   S   L    DI+E K+ +  ++ A ++AE  S+ KSD
Sbjct: 211 SLC--KDGSRIWVESTYSLLGDGSGILLVTSRDITERKRLELDIAKALQMAEAASAAKSD 268

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           FLA ++HE+RTPLTAIIGF+EV++  R       R      +I  + N +L +VND+LD 
Sbjct: 269 FLANMTHELRTPLTAIIGFAEVLRRSRNLNKTAARQ---VGHILDASNTLLSVVNDVLDF 325

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707
           S++E+G + L   P       S    LV   A  K + +       +  +  D   + Q+
Sbjct: 326 SRLEAGGLELDPAPFDPAAMASSCAGLVAERAEAKGLAVEVRAPRGLKPMNLDGPRLSQV 385

Query: 708 ALNILSNAIHFTPSGGQIIISTTHT-SNEEVILR--VRDTGVGMTNYELEKAMKPFGQIP 764
            LN LSNA+ FT  G  I ++   T   ++ +LR  V DTG+G+     E     F Q  
Sbjct: 386 LLNFLSNAVKFTSHGA-ITVALRQTIDGDQAVLRGEVTDTGIGIAPEHRENIFDRFSQAD 444

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF--PLYD 812
            +   R  GTGLGL +++ +++   G+  + S   +G+        PL D
Sbjct: 445 AAVSRRFGGTGLGLAISRRIIERMDGRIGVDSVEGQGSTFWFEVRGPLAD 494


>gi|28869332|ref|NP_791951.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|28852573|gb|AAO55646.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 746

 Score =  330 bits (845), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 130/608 (21%), Positives = 237/608 (38%), Gaps = 30/608 (4%)

Query: 222 YDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTI--N 279
            +  + Q+     R+      +   +    +   + +  LLT +E  LP   +   +   
Sbjct: 10  AERQTAQAEEDVRRVLLVQGDIQTLHTQIAEGAASVRGYLLTHQEDFLPGYINAQPLINA 69

Query: 280 LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP--FFVYS 337
                             +S E L       L      G                     
Sbjct: 70  ALVRLDANIRDQQMREHLKSIEPLIRTKVDGLERLRSMGREDHENVAAILVENKYVLDQL 129

Query: 338 HGNLFYANPSFLLLTKYKSVDDIEIAGGL--STLLDAPKLSDNNAIKPVMLYRSDRTCIA 395
              +         L   ++         L  STLL A        +  +ML +       
Sbjct: 130 RERIGVMREREDALLAERTEAAAATRERLLWSTLLAAACGIFGAILAVLMLSKG------ 183

Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
             AR+H +Q N +       +  +   +         +          +R +     +L 
Sbjct: 184 IVARVHQVQRNAQRLALGHPLLPQPPEKDEIGQLGTRLVEAGQLLAERERALRDNEERLR 243

Query: 456 SILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
            I+E   D GI  ++R G + + N    ++ GY  ++I+ + F+VF              
Sbjct: 244 LIIEGVKDYGIFALDRNGYVTTWNAGAERIKGYTEQEIIGQHFSVFYLPQECPQHPDM-- 301

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNK 570
            +    +     + +    K+       ++I     S      +S    DIS+ +  +  
Sbjct: 302 ALHEATVNGRYTEESWRRRKDGSRFWASVVITAQYDSNDELRGFSKITRDISDRRVAEIA 361

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           L  A++ AE+ S  KS+FL+R+SHE+RTPL +I+GF++++                  +I
Sbjct: 362 LGTAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLL-----DMDSPASQRPQVGHI 416

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT-- 688
            R+G  +L ++N++LDI++IE+G ++L  EPVSL   + E + LV   A +  I ++   
Sbjct: 417 LRAGQHLLKLINEVLDIARIEAGHVSLSLEPVSLSSVLKETLVLVSPMAADGNIELKELP 476

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748
              + +  ++AD + + Q+ LN+LSNAI +    GQ+ I    ++   V + V DTG G+
Sbjct: 477 HLPDELG-VIADRQRLVQVLLNLLSNAIKYNRPDGQVRIEVDRSAE-HVTVSVVDTGYGI 534

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
               L +  KPF ++        EGTGLGL L+K+M++   G   + +T  +G    +  
Sbjct: 535 APERLGQLFKPFERLDA--NPSVEGTGLGLALSKSMLEMMKGTLSVQTTQNEGCRFTLAL 592

Query: 809 PLYDTSHP 816
           P      P
Sbjct: 593 PFVAVHAP 600



 Score = 51.2 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 24/265 (9%), Positives = 69/265 (26%), Gaps = 20/265 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH--IDPNNHIGDLLKRQNTW 143
            + +D +GY+   +    +  G    ++IG               P+  + +       +
Sbjct: 254 IFALDRNGYVTTWNAGAERIKGYTEQEIIGQHFSVFYLPQECPQHPDMALHEATVNGR-Y 312

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGF---------RGFGIVHVNRVDNDPR 194
             ++     +G+  +  + + A   Y  N E  GF         R    + +     +  
Sbjct: 313 TEESWRRRKDGSRFWASVVITAQ--YDSNDELRGFSKITRDISDRRVAEIALGTAREEAE 370

Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254
              +   +  S +    +   +       +    SP         +    ++      + 
Sbjct: 371 RASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSPASQRPQVGHILRAGQHLLKL--IN 428

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
           +      + +   SL  +    +  L +         +  +     + L H         
Sbjct: 429 EVLDIARIEAGHVSLSLEPVSLSSVLKETLV--LVSPMAADGNIELKELPHLPDE--LGV 484

Query: 315 FDEGENLTPETVDKCPIPFFVYSHG 339
             + + L    ++            
Sbjct: 485 IADRQRLVQVLLNLLSNAIKYNRPD 509


>gi|330967781|gb|EGH68041.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. actinidiae str. M302091]
          Length = 775

 Score =  330 bits (845), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 130/608 (21%), Positives = 236/608 (38%), Gaps = 30/608 (4%)

Query: 222 YDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTI--N 279
            +  + Q+     R+      +   +    +   + +  LLT +E  LP   +   +   
Sbjct: 39  AERQTAQAEEDVRRVLLVQGDIQTLHTQIAEGAASVRGYLLTHQEDFLPGYINAQPLIDA 98

Query: 280 LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP--FFVYS 337
                             +S E L       L      G                     
Sbjct: 99  ALVRLDANIRDQQMREHLKSIEPLIRTKVDGLERLRSMGREDHETVAAILVENKYVLDQL 158

Query: 338 HGNLFYANPSFLLLTKYKSVDDIEIAGGL--STLLDAPKLSDNNAIKPVMLYRSDRTCIA 395
              +         L   ++         L  STLL A        +  +ML +       
Sbjct: 159 RERIGVMREREDALLAERTEAAAATRERLLWSTLLAAACGIFGAILAVLMLSKG------ 212

Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
             AR+H +Q N +       +  +   +         +          +R +     +L 
Sbjct: 213 IVARVHQVQRNAQRLALGHPLLPQPPEKDEIGQLGTRLVEAGQLLAERERALRDNEERLR 272

Query: 456 SILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
            I+E   D GI  ++R G + + N    ++ GY  ++I+ + F+VF              
Sbjct: 273 LIIEGVKDYGIFALDRNGYVTTWNAGAERIKGYTEQEIIGQHFSVFYLPQECPQHPDM-- 330

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNK 570
            +    +     + +    K+       ++I     S      +S    DIS+ +  +  
Sbjct: 331 ALHEATVNGRYTEESWRRRKDGSRFWASVVITAQYDSNDELRGFSKITRDISDRRVAEIA 390

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           L  A++ AE+ S  KS+FL+R+SHE+RTPL +I+GF++++                  +I
Sbjct: 391 LGTAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLL-----DMDSPASQRPQVGHI 445

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT-- 688
            R+G  +L ++N++LDI++IE+G ++L  EPVSL   + E + LV   A +  I +    
Sbjct: 446 LRAGQHLLKLINEVLDIARIEAGHVSLSLEPVSLSSVLKETLVLVSPMAADGNIELEELP 505

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748
              + +  ++AD + + Q+ LN+LSNAI +    GQ+ I    ++   V + V DTG G+
Sbjct: 506 HLPDELG-VIADRQRLVQVLLNLLSNAIKYNRPDGQVRIEVDRSAE-RVTVSVVDTGYGI 563

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
               L +  KPF ++        EGTGLGL L+K+M++   G   + +T  +G    +  
Sbjct: 564 APERLGQLFKPFERLDA--NPSVEGTGLGLALSKSMLEMMNGTLSVQTTQNEGCRFTLAL 621

Query: 809 PLYDTSHP 816
           P      P
Sbjct: 622 PFVAVHAP 629



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/280 (9%), Positives = 73/280 (26%), Gaps = 22/280 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH--IDPNNHIGDLLKRQNTW 143
            + +D +GY+   +    +  G    ++IG               P+  + +       +
Sbjct: 283 IFALDRNGYVTTWNAGAERIKGYTEQEIIGQHFSVFYLPQECPQHPDMALHEATVNGR-Y 341

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGF---------RGFGIVHVNRVDNDPR 194
             ++     +G+  +  + + A   Y  N E  GF         R    + +     +  
Sbjct: 342 TEESWRRRKDGSRFWASVVITAQ--YDSNDELRGFSKITRDISDRRVAEIALGTAREEAE 399

Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254
              +   +  S +    +   +       +    SP         +    ++      + 
Sbjct: 400 RASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSPASQRPQVGHILRAGQHLLKL--IN 457

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
           +      + +   SL  +    +  L +         +  +     E L H         
Sbjct: 458 EVLDIARIEAGHVSLSLEPVSLSSVLKETLV--LVSPMAADGNIELEELPHLPDE--LGV 513

Query: 315 FDEGENLTPETVDKCPIPFFVYSHGNLFY--ANPSFLLLT 352
             + + L    ++                   + S   +T
Sbjct: 514 IADRQRLVQVLLNLLSNAIKYNRPDGQVRIEVDRSAERVT 553


>gi|119356709|ref|YP_911353.1| multi-sensor signal transduction histidine kinase [Chlorobium
           phaeobacteroides DSM 266]
 gi|119354058|gb|ABL64929.1| multi-sensor signal transduction histidine kinase [Chlorobium
           phaeobacteroides DSM 266]
          Length = 590

 Score =  330 bits (845), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 108/572 (18%), Positives = 213/572 (37%), Gaps = 40/572 (6%)

Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
              V+ +     L SEE           +++      +      ++          RNH 
Sbjct: 51  SRQVIDSRSPIWLVSEEPDHWTDNVGRVLDVRVTLIGKDGRVAGDSYLSLSALAKVRNHL 110

Query: 310 SLSAYFDEGEN------LTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIA 363
                 +             ETV +  +   V   G   YA   F          + E  
Sbjct: 111 HRPEVKEALSTGYGEDIRYSETVREQMLYMAVPVGGEAPYAVLRFAKPLYDIGELESEAR 170

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
            GL   L    L          L  +        A    +    + S  +     ++  +
Sbjct: 171 KGLEGGLLWALLFSLLIGGLTALLLARPLRRIVDAAEKCVH--GDYSGTIAVNRDDEIGK 228

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
                     E   +  +              ++L    + I + N +G I+  N A S+
Sbjct: 229 MARAFNFMSAEINTMQRK---------EEWYRAVLSGIREAIIVTNADGEIILVNPAASR 279

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR- 542
           +F      +   P            +    +++ +       E+++L + K ++ + +  
Sbjct: 280 MFRIDGAMLKSHPVKQL----ADQKLRELFSDVHTKRTTLQKEEVSLVTVKGKRTMQISS 335

Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
           + +K+          ++DI++ +  +                + DF++ VSHE+RTPLT+
Sbjct: 336 MPVKRDGQFDGTVFVLNDITKLRNLE--------------RIRRDFVSSVSHELRTPLTS 381

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           I G++E + +             +   I +    +  +VND+LD+S+IESGK++  F P 
Sbjct: 382 IKGYTETLLDGAMH--DPEHAAAFLRIILQESEQLTALVNDVLDLSRIESGKIDYRFAPT 439

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
            L   + ++  LV     +K+I +   F   +P + AD   ++    N+L NA+ +    
Sbjct: 440 DLRSILQKSSELVLPAIEKKKIKLDMQFQEELPLVYADAAYLEIAVRNLLDNAVKYVEDT 499

Query: 723 -GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
            G+I + T + S   VIL V D G+G+   +L++  + F +   ++  +  GTGLGL + 
Sbjct: 500 VGRIRV-TAYKSESNVILEVHDNGLGIHPSDLDRIFERFYRADKARSRQSGGTGLGLAIV 558

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
           K +V A+ G   + S   +G++  +  P+   
Sbjct: 559 KHIVLAHKGTIEVHSRLNQGSVFRMSLPVSTV 590


>gi|148251757|ref|YP_001236342.1| PAS/PAC sensor hybrid histidine kinase [Bradyrhizobium sp. BTAi1]
 gi|146403930|gb|ABQ32436.1| PAS/PAC sensor hybrid histidine kinase [Bradyrhizobium sp. BTAi1]
          Length = 745

 Score =  330 bits (845), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 97/371 (26%), Positives = 168/371 (45%), Gaps = 16/371 (4%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           +++    +  S+ E   D I +   +G I+  N A  ++ G   E++L   F+  L +  
Sbjct: 102 ELQEAEQRARSLFEQQGDLIVMRESDGTIIFVNDAYCRMAGLDRENLLGSQFSFDLLEQG 161

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS--LTMHDISE 563
            S +    T +    +   +           + ++ R  + +              D+++
Sbjct: 162 DSALEPSGTRVHDQRIDSAI---------GPRWIAWREALVRSDAGHPAVQQCVGRDVTD 212

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + +  L+ A+  A   +  KS FLA  SHEIRTPL  I+G S ++   +  P      
Sbjct: 213 RTETERALAEARDQANAANRAKSRFLAMASHEIRTPLNGILGMSGLLLETQLTP----EQ 268

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
             YA  +  SG  ++ ++N+LLD SKIE+GK+ L  +P +L   + E   L+   A  K+
Sbjct: 269 TTYAKAVRSSGEALMSLINELLDYSKIEAGKLALEAQPFALTALIEEITELLAPRAQGKQ 328

Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           + I       +P  +  D   ++Q+ LN+  NAI FT  GG  +I+       E+  +VR
Sbjct: 329 LEIAAYLDERLPTWVTGDAARLRQVLLNLAGNAIKFTSKGGVALIAEPGIWPNEISFQVR 388

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG+G+     E+  + F Q  +S      GTGLGL ++  +V    G+  + S P  G+
Sbjct: 389 DTGIGIAADAQERIFREFEQADDSVARSFGGTGLGLAISDRIVKRMGGRIALQSQPGAGS 448

Query: 803 LIEIIFPLYDT 813
             E+  PL   
Sbjct: 449 TFEVSVPLPPA 459



 Score = 46.2 bits (108), Expect = 0.024,   Method: Composition-based stats.
 Identities = 23/234 (9%), Positives = 54/234 (23%), Gaps = 22/234 (9%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLC-DVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150
            G +  +++   +  G     ++G +   D+ +             L+   T      + 
Sbjct: 127 DGTIIFVNDAYCRMAGLDRENLLGSQFSFDLLEQGD--------SALEPSGTRVHDQRID 178

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
              G       +     + S            +        +          + +  +  
Sbjct: 179 SAIGPRWIAWRE---ALVRSDAGHP--AVQQCVGRDVTDRTETERALAEARDQANAANRA 233

Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL- 269
           K    ++   +          P   +      L E     +     +          SL 
Sbjct: 234 KSRFLAMASHEIR-------TPLNGILGMSGLLLETQLTPEQTTYAKAVRSSGEALMSLI 286

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
            E  D+  I   +   +     L    +E  E L+ R            +   P
Sbjct: 287 NELLDYSKIEAGKLALEAQPFALTALIEEITELLAPRAQGKQLEIAAYLDERLP 340


>gi|315658045|ref|ZP_07910918.1| phosphate regulon sensor histidine kinase protein PhoR
           [Staphylococcus lugdunensis M23590]
 gi|315496935|gb|EFU85257.1| phosphate regulon sensor histidine kinase protein PhoR
           [Staphylococcus lugdunensis M23590]
          Length = 569

 Score =  330 bits (845), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 87/396 (21%), Positives = 175/396 (44%), Gaps = 29/396 (7%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKR--KMEIEVMQLCSILEATSDGIAIINREGIIL 475
                   +      +   ++  R+ K   K +I+  +L + LE     + +I++ G I+
Sbjct: 189 VRVPESNVKETKALFVTTNELARRLQKLNNKQKIQSNRLKTTLENIPSSVLMIDKYGEIV 248

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
             N +  ++FG   E +  K +  F++      +   + E    +     +     +   
Sbjct: 249 VANHSYYEVFGLE-EKVENKDYNDFID----DKIKQLILEAFKTEKSMYNQVEVNINNVH 303

Query: 536 EKLLSLRIIIKKLPFS---SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
            K   +  +              + +HDI+  K+ +              + + +F+A V
Sbjct: 304 HKYFDVSCVPILSKSKKHLQGMVVVLHDITNLKKLE--------------NLRREFVANV 349

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHE++TP+T+I GF+E +       + +     + N I +  N +  +V DLLD+S IE 
Sbjct: 350 SHELKTPITSIKGFAETLIEGAKDDVASLDM--FLNIILKESNRIESLVMDLLDLSHIE- 406

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712
            +  L    V+L E     +  +Q  A +K I I    + +I    A+   + Q+  N+L
Sbjct: 407 QQRELETAYVNLSELAHNTVDNLQNQAKDKNIEIIDEISPDII-FKANKNKIAQVITNLL 465

Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           SNAI+++    ++I+   +    +V L ++D G+G++  E +   + F ++  ++     
Sbjct: 466 SNAINYSLENNRVIVRV-YRQQSKVYLEIQDFGIGISKEEQKHIFERFYRVDKARSRDSG 524

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           GTGLGL + K +V+A+ G   + S P KG+  ++ F
Sbjct: 525 GTGLGLSITKHIVEAHHGVISVKSEPNKGSTFKVTF 560


>gi|289550551|ref|YP_003471455.1| Phosphate regulon sensor protein PhoR [Staphylococcus lugdunensis
           HKU09-01]
 gi|289180083|gb|ADC87328.1| Phosphate regulon sensor protein PhoR [Staphylococcus lugdunensis
           HKU09-01]
          Length = 543

 Score =  330 bits (845), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 87/396 (21%), Positives = 175/396 (44%), Gaps = 29/396 (7%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKR--KMEIEVMQLCSILEATSDGIAIINREGIIL 475
                   +      +   ++  R+ K   K +I+  +L + LE     + +I++ G I+
Sbjct: 163 VRVPESNVKETKALFVTTNELARRLQKLNNKQKIQSNRLKTTLENIPSSVLMIDKYGEIV 222

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
             N +  ++FG   E +  K +  F++      +   + E    +     +     +   
Sbjct: 223 VANHSYYEVFGLE-EKVENKDYNDFID----DKIKQLILEAFKTEKSMYNQVEVNINNVH 277

Query: 536 EKLLSLRIIIKKLPFS---SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
            K   +  +              + +HDI+  K+ +              + + +F+A V
Sbjct: 278 HKYFDVSCVPILSKSKKHLQGMVVVLHDITNLKKLE--------------NLRREFVANV 323

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHE++TP+T+I GF+E +       + +     + N I +  N +  +V DLLD+S IE 
Sbjct: 324 SHELKTPITSIKGFAETLIEGAKDDVASLDM--FLNIILKESNRIESLVMDLLDLSHIE- 380

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712
            +  L    V+L E     +  +Q  A +K I I    + +I    A+   + Q+  N+L
Sbjct: 381 QQRELETAYVNLSELAHNTVDNLQNQAKDKNIEIIDEISPDII-FKANKNKIAQVITNLL 439

Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           SNAI+++    ++I+   +    +V L ++D G+G++  E +   + F ++  ++     
Sbjct: 440 SNAINYSLENNRVIVRV-YRQQSKVYLEIQDFGIGISKEEQKHIFERFYRVDKARSRDSG 498

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           GTGLGL + K +V+A+ G   + S P KG+  ++ F
Sbjct: 499 GTGLGLSITKHIVEAHHGVISVKSEPNKGSTFKVTF 534


>gi|16331796|ref|NP_442524.1| sensory transduction histidine kinase [Synechocystis sp. PCC 6803]
 gi|1001756|dbj|BAA10594.1| sensory transduction histidine kinase [Synechocystis sp. PCC 6803]
          Length = 806

 Score =  330 bits (845), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 95/326 (29%), Positives = 170/326 (52%), Gaps = 17/326 (5%)

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---- 553
             F+      +    + + L     + L           ++    +   ++         
Sbjct: 328 DFFIHLGDRPMFWQAIEQSLEDPTME-LSTELRLEAANGEIYHCLLR-GQIHQEQGEAFV 385

Query: 554 -YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
               T+ DI+E K+ + +L  + KI  K +  K +FLA +SHE+RTPL +I+G  E ++N
Sbjct: 386 KIIGTIADITEIKKAEEQLKLSNKILAKATQLKDEFLANMSHELRTPLNSILGMIETLQN 445

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
           Q +GPL N + ++    ++ SG  +L ++ND+LD+SKIE+G+M+L   P S+   V+ ++
Sbjct: 446 QVYGPL-NGKQVQSLEIVENSGRHLLSLINDILDLSKIEAGRMDLDLNPTSVSALVNHSL 504

Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
           + VQ +A +K+I + +    N+P +L D R + Q+ +N+L+NAI FTP GG++++     
Sbjct: 505 TFVQQFAIQKQINLSSEIIPNLPDVLVDKRRLCQVLINLLNNAIKFTPEGGKVVVQADLI 564

Query: 733 SNE---------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
             +         ++   V DTG+G+    L    +PF QI ++   R +GTGLGL L K 
Sbjct: 565 KEQGKENSQSPPQLSFTVFDTGIGIEADRLNNIFEPFVQIDSALNRRYDGTGLGLSLVKK 624

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFP 809
           +V+ + G   + S   +G+  +I  P
Sbjct: 625 IVELHGGSVTVTSKLNEGSRFKITIP 650


>gi|332701527|ref|ZP_08421615.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332551676|gb|EGJ48720.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 945

 Score =  330 bits (845), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 111/788 (14%), Positives = 246/788 (31%), Gaps = 87/788 (11%)

Query: 90  DAHGYLKEISEELPKTIG--NYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
              G  + +S  + +  G       ++G    ++    +           + + T   + 
Sbjct: 21  GPDGRYEYVSPAIREATGGLLTPEYLVGKHPREIVHNSNDLLRMMESAQTRAKETGRDQV 80

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND--------------- 192
             +  E             P  +   +   F    IV                       
Sbjct: 81  LFFDFETPIGTRHFQAVIRPERTCQGQVESF--LSIVRDVSEIRRLQEELAAAKAKAEEQ 138

Query: 193 ---PRALGKRLDKKFSHLHEIKKGHSSVEKEK-------------------YDIFSQQSP 230
               +   + L++ +  + +     +   + +                       S    
Sbjct: 139 AEALKRSNRALERLYQEVEKRVGERTVDLEAEIAERRRSEERLRESEELYRGLFESVSEA 198

Query: 231 PPHLRMKNKVSSLTEYYAHKDDV-------------LKTEKYPLLTSEESSLPEQEDFHT 277
              +R  +    +    A                  +  E      +    +      + 
Sbjct: 199 IFLVRQSDGQILMANETASTMYRYSREELLRLKNMDVSAEPQATKQATHHFMSYIPVRYH 258

Query: 278 INLNQYTKKQYFGT----LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF 333
              +               Q  +                    EGE      V+      
Sbjct: 259 CKKDGLVFPVEITASNIVFQGETAHIIAIRDISERMHSEKKLQEGEERYRAVVEDLTEFV 318

Query: 334 FVY-SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
             +   G + + N +        + + +        L D   L  + + +      S   
Sbjct: 319 TRFTRAGVITFVNEAVCRFHDTPAENVLGKN-----LFD--LLPSSVSDELRRQLASATP 371

Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
                   H I           +      ++  + +   G+  +  + R  +  +     
Sbjct: 372 EQPLVFLTHPINSPSGEKRWQEWTNRALFDESGKIIEYQGVGRDITEQRYAQEALARREQ 431

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT-VFLEQNTPSVMNH 511
           +  ++ +   D I   NR+ +    N A+S     P  +++ +  +   +          
Sbjct: 432 EFRNLADNAPDPIVRYNRDVVRTYANAALSLALDVPYSELIGQGLSGTPISAEARQDYEQ 491

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQE 567
            + E+      +      L    ++  L ++  +                  DI++  + 
Sbjct: 492 AVREVFDSGEEKIF---VLQLNPKKGSLHIQYRLTPEYSEDGQVESVLAIGRDITDLLRL 548

Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
           + +L  AK+ AE  S  KS FL+ +SHEIRTPL +I    E++         +     Y 
Sbjct: 549 EQELRQAKETAESASRAKSTFLSNMSHEIRTPLNSIQSVIELL----PSLDISEEAASYV 604

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
              ++S + +L ++N+LLD+S+IESGK  L  +P      +   +  + + A  K + + 
Sbjct: 605 RIAEQSASHLLRLINNLLDLSRIESGKTELARKPFEPRHLLQAILRPLAVTAGTKGLDLA 664

Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-----TSNEEVI--L 739
            + A+++P R++ D   + QI +N++ NAI +T +G +I IS          +  +    
Sbjct: 665 VAVADDVPVRLMGDELRLGQILMNLVGNAIKYTDTG-RISISVKRDAACGREDGRIRLLF 723

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V+DTG+G+     E   + F  + +  +   E  GLGL ++  +V+   G+ ++ S   
Sbjct: 724 SVKDTGIGIHQDRCEHIFEGFRHVLDLDRPSSESAGLGLQISTQLVEQMGGRIWVESELG 783

Query: 800 KGTLIEII 807
           +G+     
Sbjct: 784 QGSTFCFT 791



 Score = 64.7 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 38/368 (10%), Positives = 88/368 (23%), Gaps = 28/368 (7%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144
           F       G +  ++E + +     A  ++G  L D+      D    +   L       
Sbjct: 317 FVTRFTRAGVITFVNEAVCRFHDTPAENVLGKNLFDLLPSSVSD---ELRRQLASATPEQ 373

Query: 145 GKTTLWPIEG--TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
               L       +      +     ++  + +   ++G G           +    R ++
Sbjct: 374 PLVFLTHPINSPSGEKRWQEWTNRALFDESGKIIEYQGVG--RDITEQRYAQEALARREQ 431

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPP------PHLRMKNKVSSLTEYYAHKDDVLKT 256
           +F +L +                   +        P+  +  +  S T   A      + 
Sbjct: 432 EFRNLADNAPDPIVRYNRDVVRTYANAALSLALDVPYSELIGQGLSGTPISAEARQDYEQ 491

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
               +  S E  +   +            +       +   +    L+     +     +
Sbjct: 492 AVREVFDSGEEKIFVLQ--LNPKKGSLHIQYRLTPEYSEDGQVESVLAIGRDITDLLRLE 549

Query: 317 EGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVD-DIEIAGGLSTLLDAPKL 375
           +      ET +            + F +N S  + T   S+   IE+   L    +A   
Sbjct: 550 QELRQAKETAESAS------RAKSTFLSNMSHEIRTPLNSIQSVIELLPSLDISEEAASY 603

Query: 376 SDNNAIKPVMLYRS------DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
                     L R            +    L    +   + L     P            
Sbjct: 604 VRIAEQSASHLLRLINNLLDLSRIESGKTELARKPFEPRHLLQAILRPLAVTAGTKGLDL 663

Query: 430 QNGIEPED 437
              +  + 
Sbjct: 664 AVAVADDV 671



 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/126 (13%), Positives = 39/126 (30%), Gaps = 7/126 (5%)

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG--YPVEDILRKPFTVFLE--QN 504
           +       I+E+  D I +   +G     + A+ +  G     E ++ K     +    +
Sbjct: 1   MSEPDFKRIVESAPDTIIVFGPDGRYEYVSPAIREATGGLLTPEYLVGKHPREIVHNSND 60

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL--PFSSCYSLTMHDIS 562
              +M    T        Q L           +     I  ++        +   + D+S
Sbjct: 61  LLRMMESAQTRAKETGRDQVLFFDFETPIG-TRHFQAVIRPERTCQGQVESFLSIVRDVS 119

Query: 563 EWKQEK 568
           E ++ +
Sbjct: 120 EIRRLQ 125


>gi|325109467|ref|YP_004270535.1| multi-sensor signal transduction histidine kinase [Planctomyces
            brasiliensis DSM 5305]
 gi|324969735|gb|ADY60513.1| multi-sensor signal transduction histidine kinase [Planctomyces
            brasiliensis DSM 5305]
          Length = 1506

 Score =  330 bits (845), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 107/739 (14%), Positives = 236/739 (31%), Gaps = 49/739 (6%)

Query: 91   AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150
              G +  +++E+       +  + GM++ D+ +    +        L        +T   
Sbjct: 786  PDGRIALVNDEVCAMFDLSSAALQGMQVEDLFEQTFDEDQGVDLQFLFENPPEQAETITL 845

Query: 151  PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
             +   +    +  A + +   +    G      +          A  +R ++      E+
Sbjct: 846  RLPARSSDERVFPAEVKVTRAD-TLEGTILLLSLIDQTEVERIEASLRRTEELLKKTSEM 904

Query: 211  KKGHSSVEKEKYDIFSQQS-----PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
             +                             K  +    ++       L T+    +   
Sbjct: 905  ARIGGWEFDAITRELHWSDEVCRIHDVPAGFKPTLEQAVQFMTPDSQKLATDAIDEMLKT 964

Query: 266  ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
                  + ++ T +  Q   +        + K    +       S     +    LT   
Sbjct: 965  GKPYDLELEYITASGRQVWGRAIGEPEFKDGKCVRMW-GALQDISNYKETERRLQLTRHA 1023

Query: 326  VDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
            V+       F+   G L Y N        Y   +       ++    AP +      +  
Sbjct: 1024 VEFSADAVYFIERDGQLRYVNDRACRDLGYTKTE----FESMTVSDIAPNVPAERWEEEW 1079

Query: 385  MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
               +          RL      R+N             +F           +    +   
Sbjct: 1080 QQNKEIG------NRLFESIHQRKNGEKFPCQIQTSFLKFESQELIVATVRDITQAK--- 1130

Query: 445  RKMEIEVMQLC-SILEATSDGIAIINREGIILSTNRAVSKLFGYPVED-ILRKP---FTV 499
                    +L  ++ E ++D   + +  G IL  N+A   +   P  + +L +    F+ 
Sbjct: 1131 -----REAELRHTLFERSADAHLLFDETG-ILECNQAAIDMLRMPDRENLLGRQPFEFSP 1184

Query: 500  FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS--LRIIIKKLPFSSCYSLT 557
              + N     +     +       +     + +    +     + +   +L       L 
Sbjct: 1185 EYQPNGERSEDLRGKYVAQAYESGSFRFDWIHTRANGEEFPCDVTLTAVELESGPALLLV 1244

Query: 558  MHDISEWKQEKNKLSHAKKIAEKESSHKS-------DFLARVSHEIRTPLTAIIGFSEVI 610
             HDISE KQ +           + +           +F    SH+++TPL  I GF++ +
Sbjct: 1245 WHDISERKQAEETQVALTLQVVEANRALERTNAELKEFAYVASHDLQTPLRGISGFAQFL 1304

Query: 611  KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
            K    G L + +  EY + I      +  ++ DLL  S+++    +  F  V L+  + +
Sbjct: 1305 KEDYEGKL-DEQADEYLSRISDGAQRMQRLIKDLLAYSQVDL--TSSAFASVDLNTLLDD 1361

Query: 671  AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
             I  ++         +    A  +P +  +   + Q+  N++SN++ +      +I  + 
Sbjct: 1362 VIGYLRPAIETSAADVT---AERLPTVQGNSTQLFQLFQNLVSNSLKYRNQEHTVIQISA 1418

Query: 731  HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
                EE ++ VRD G+G+     ++  + F ++    Q   EGTG+GL L + +V+ + G
Sbjct: 1419 EEREEEWVIGVRDNGIGIAPEHHDRIFQIFRRLH--TQKEYEGTGVGLALCRRIVERHGG 1476

Query: 791  KFYIFSTPAKGTLIEIIFP 809
            + ++ S    G   +   P
Sbjct: 1477 EIWVESDEDNGCCFKFTLP 1495



 Score = 98.9 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 43/506 (8%), Positives = 127/506 (25%), Gaps = 32/506 (6%)

Query: 90   DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
            D    +  +++ +  ++G    ++ G    ++              ++            
Sbjct: 671  DRENLILRVNQSVLDSLGMSRAEVEGRASSELYPNNAEQFYQDDLQVIASGKP------K 724

Query: 150  WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR---LDKKFSH 206
                       +    +PI +   E    R   I           +L +       +   
Sbjct: 725  LAFVEPIGDRWVRTDKIPITNVAGEVD--RILVIATDVTEQRRAESLVRAWFNASPEGMI 782

Query: 207  LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
                    + V  E   +F   S          +    + +     V     +     + 
Sbjct: 783  TARPDGRIALVNDEVCAMFDLSSAALQGMQVEDL--FEQTFDEDQGVDLQFLFENPPEQA 840

Query: 267  SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES--FEYLSHRNHPSLSAYFDEGENLTPE 324
             ++  +    + +   +  +                  +       + A     E L  +
Sbjct: 841  ETITLRLPARSSDERVFPAEVKVTRADTLEGTILLLSLIDQTEVERIEASLRRTEELLKK 900

Query: 325  TVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
            T +   I  + +       + +     +    +     +   +  +    +    +AI  
Sbjct: 901  TSEMARIGGWEFDAITRELHWSDEVCRIHDVPAGFKPTLEQAVQFMTPDSQKLATDAIDE 960

Query: 384  VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
            ++              L  I  +            E   +  + +   G   +  + +  
Sbjct: 961  MLKTGK-----PYDLELEYITASGRQVWGRAIG--EPEFKDGKCVRMWGALQDISNYKET 1013

Query: 444  KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            +R++++        +E ++D +  I R+G +   N    +  GY   +      +     
Sbjct: 1014 ERRLQLT----RHAVEFSADAVYFIERDGQLRYVNDRACRDLGYTKTEFESMTVSDIAPN 1069

Query: 504  NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI--IIKKLPFSSCYSLTMHDI 561
                       +   +  R      ++   K  +    +I     K         T+ DI
Sbjct: 1070 VPAERWEEEWQQNKEIGNRL---FESIHQRKNGEKFPCQIQTSFLKFESQELIVATVRDI 1126

Query: 562  SEWKQEKNKLSHAKKIAEKESSHKSD 587
            ++ K+E        + +        +
Sbjct: 1127 TQAKREAELRHTLFERSADAHLLFDE 1152



 Score = 86.2 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/379 (10%), Positives = 96/379 (25%), Gaps = 29/379 (7%)

Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270
             GH  V ++   +   +       + + V+     Y                   +   
Sbjct: 550 VNGHQIVYQKGNPLLGDEDLDFTAEITDSVAGRMWTYRFAALPGYVSSARSGAPWLALTA 609

Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330
                  + +           ++  +      L+     +           T   +D  P
Sbjct: 610 GLLLSTLVGIGTMRLHDRSLKMEEVAAARKGQLN-----AAEMRLFREREETQLILDSIP 664

Query: 331 IPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389
              F+      +   N S L        +    A   S L      +     +  +   +
Sbjct: 665 SLIFLKDRENLILRVNQSVLDSLGMSRAEVEGRAS--SELYPN---NAEQFYQDDLQVIA 719

Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449
                 A       +W       +        N   E      I  +  + R  +  +  
Sbjct: 720 SGKPKLAFVEPIGDRW-------VRTDKIPITNVAGEVDRILVIATDVTEQRRAESLV-- 770

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
                 +   A+ +G+     +G I   N  V  +F      +         EQ      
Sbjct: 771 -----RAWFNASPEGMITARPDGRIALVNDEVCAMFDLSSAALQGMQVEDLFEQTFDEDQ 825

Query: 510 NHYLTEILSL--DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT--MHDISEWK 565
              L  +     +  +T+       + +E++    + + +        L   + D +E +
Sbjct: 826 GVDLQFLFENPPEQAETITLRLPARSSDERVFPAEVKVTRADTLEGTILLLSLIDQTEVE 885

Query: 566 QEKNKLSHAKKIAEKESSH 584
           + +  L   +++ +K S  
Sbjct: 886 RIEASLRRTEELLKKTSEM 904



 Score = 42.3 bits (98), Expect = 0.31,   Method: Composition-based stats.
 Identities = 28/265 (10%), Positives = 69/265 (26%), Gaps = 21/265 (7%)

Query: 86   TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
             + I+  G L+ +++   + +G    +   M + D++  +  +         K       
Sbjct: 1031 VYFIERDGQLRYVNDRACRDLGYTKTEFESMTVSDIAPNVPAERWEEEWQQNKEIGNRLF 1090

Query: 146  KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
            ++      G      I  + L     ++E         V           L   L ++ +
Sbjct: 1091 ESIHQRKNGEKFPCQIQTSFLKF--ESQELI----VATVRDITQAKREAELRHTLFERSA 1144

Query: 206  HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
              H +      +E  +  I   + P     +  +    +  Y    +  +  +   +   
Sbjct: 1145 DAHLLFDETGILECNQAAIDMLRMPDRENLLGRQPFEFSPEYQPNGERSEDLRGKYVAQA 1204

Query: 266  ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
              S   + D+     N               +     L   +  S     +E +      
Sbjct: 1205 YESGSFRFDWIHTRANGEEFPCDVTLTAVELESGPALLLVWHDISERKQAEETQ------ 1258

Query: 326  VDKCPIPFFVYSHGNLFYANPSFLL 350
                     V     +  AN +   
Sbjct: 1259 ---------VALTLQVVEANRALER 1274


>gi|42524880|ref|NP_970260.1| signal transduction histidine kinase [Bdellovibrio bacteriovorus
           HD100]
 gi|39577090|emb|CAE78319.1| signal transduction histidine kinase [Bdellovibrio bacteriovorus
           HD100]
          Length = 838

 Score =  330 bits (845), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 112/550 (20%), Positives = 211/550 (38%), Gaps = 35/550 (6%)

Query: 285 KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYA 344
           ++     L   S+     ++     +               V + P     Y+   +   
Sbjct: 32  QRPELLKLSQYSERPSNEMTEVLRTTEQILVRAEAAQDRFLVSRQPTDLQSYNS-EITAL 90

Query: 345 NPSFLLLTKYKS--VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC----IAASA 398
           N     +++       +  +A  L  L+ A   + N  +       +             
Sbjct: 91  NGQLARMSQLVRNKPREHAMAVKLGHLIRAHIETANTQVMTPQRRPAQTEESLDKTRYQI 150

Query: 399 RLHTIQWNRENSLAMTFIPFEKANQ---FPENMPQNGIEPEDVDTRINKR------KMEI 449
           R   I+    ++ A+ F P ++               I    +  +           ++ 
Sbjct: 151 RHQLIEMQAASAPAIKFKPTKEGQNFLLGLCAAIVLIIASRVLQRKEQHETRKAVEALQG 210

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP----FTVFLEQNT 505
           + + L +IL + S+ + ++++ G     N A  ++ G  +++I           F +   
Sbjct: 211 KSILLDTILNSMSEALIVVDQNGWFTHYNAAAQRIIGSKIKEISTDSSVEQLGFFNQAEG 270

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGS---TKEEKLLSLRIIIKKLPFSS--CYSLTMHD 560
                  L    +L   +  +           E   +SL                +   D
Sbjct: 271 RPFTRKELPLYRALSGDRVDDLEIFVQNSEHPEGIYISLSSRPLNDIDGGISGALIVFKD 330

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           IS  K  + +   A++ A + S  KSDFLA +SHEIRTP+  +IG + ++ +       N
Sbjct: 331 ISRRKMVEQEWIRAREAALEASQKKSDFLAAMSHEIRTPMNGVIGMTTLLADTHL----N 386

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
           P   +Y   I RS   +L ++NDLLD SKIE+GK+ L  +P+ L   V + + + +    
Sbjct: 387 PEQTDYVGNIKRSAESLLMLINDLLDHSKIEAGKIRLDPQPLDLQFLVEDVLEMFKPTVA 446

Query: 681 EKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSG-GQIIISTTHTSNEE-- 736
           EK I +   F   N+    AD   ++QI +N++ NA+ FT  G  ++ +S+    + +  
Sbjct: 447 EKNIGLECRFDGKNLWHYRADAGRLRQILVNLMGNAVKFTEKGFVRLEVSSRGDKDGKTA 506

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           ++  V+DTG G+  +E     + + Q       +  GTGLGL + K +VD   G   + S
Sbjct: 507 LLFEVKDTGQGLQEHEKRSLFQKYFQAKAGM--KFGGTGLGLSICKQLVDLMGGDIGVES 564

Query: 797 TPAKGTLIEI 806
            P  G+    
Sbjct: 565 VPGVGSNFWF 574


>gi|307296809|ref|ZP_07576627.1| multi-sensor hybrid histidine kinase [Sphingobium chlorophenolicum
           L-1]
 gi|306877722|gb|EFN08948.1| multi-sensor hybrid histidine kinase [Sphingobium chlorophenolicum
           L-1]
          Length = 766

 Score =  330 bits (845), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 102/537 (18%), Positives = 204/537 (37%), Gaps = 28/537 (5%)

Query: 278 INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS 337
            + +     +    LQ+   E++          +          T   V+       VY 
Sbjct: 2   ADPSSPGWMKEMLALQSAVTEAYADFQQIIDEVVERALRIIPLATGAIVEMRDGDDMVYR 61

Query: 338 HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397
             +        + L    S+    +A G  T       +D    +        R+ +   
Sbjct: 62  AASGTSIQQIGMRLALSGSLSGTCVATG-ETQFCHDSETDPRVDRDACRKVGVRSMM--- 117

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
             L  + ++      +     + A     ++    +    + T               + 
Sbjct: 118 --LVPLPYHGRTVGVLKVYSGQVAAFTRADLDVVRLMAGPIATGFANAAHSEAARHFAAT 175

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
            E  + G+A  + +G  L  N    ++ GY  E+++   +           ++  L   L
Sbjct: 176 FEQAAVGLAHCSPQGRFLLVNDRFCEIAGYEREELIGLDYRQITHPADYE-IDARLAGRL 234

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSH 573
            L              K+  L+ + + +  +  +S     +   + DI   +  +     
Sbjct: 235 LLGEINDFAYEKRYVRKDGGLVWINLTVSLVRDASGEPDFFVCVVEDIGARRSAEM---- 290

Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
                   S+ K+ FLA +SHEIRTP+  I+GF++++     G    P        I  S
Sbjct: 291 -------ASAAKTGFLANMSHEIRTPMNGILGFADLLL----GAGLPPDQHRQVKMIADS 339

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693
           G  ++ ++ND+LD+SK+E+G+M +  EP  L  A+   ++LV++ A +K I +    A++
Sbjct: 340 GRAMMRLLNDILDLSKVEAGQMEIAREPFDLVHALDACLNLVRVGAEQKGIDLIRDIADD 399

Query: 694 IPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752
           +PR +  D   ++Q+ LN+L NA+ FT  G  + +       + +++ V D+G G+    
Sbjct: 400 LPRTVTGDGLRLRQVVLNLLGNAVKFTSEG-HVALRVHLDGADRLVIVVEDSGPGIAPER 458

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
                + F Q       R  G+GLGL ++  +V    G+  + S   +G+   +  P
Sbjct: 459 QAAIFEKFVQADAGTAARFGGSGLGLSISAQLVTLMNGELTLDSVVGEGSRFILRLP 515



 Score = 68.5 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 35/397 (8%), Positives = 100/397 (25%), Gaps = 24/397 (6%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG--DLLKRQNTWYGKTT 148
             G    +++   +  G    ++IG+    ++     + +  +    LL   N +  +  
Sbjct: 188 PQGRFLLVNDRFCEIAGYEREELIGLDYRQITHPADYEIDARLAGRLLLGEINDFAYEKR 247

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +G  +++ + ++   +   + E   F    +V                    +++ 
Sbjct: 248 YVRKDGGLVWINLTVSL--VRDASGEPDFF--VCVVEDIGARRSAEMASAAKTGFLANMS 303

Query: 209 EIKKGHS--SVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
              +      +      + +   P  H ++K    S        +D+L   K      E 
Sbjct: 304 HEIRTPMNGILGFADLLLGAGLPPDQHRQVKMIADSGRAMMRLLNDILDLSKVEAGQMEI 363

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
           +  P     H ++      +        +          R          +         
Sbjct: 364 AREPFDLV-HALDACLNLVRVGAEQKGIDLIRDIADDLPRTVTGDGLRLRQVVLNLLGNA 422

Query: 327 ------DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIA-----GGLSTLLDAPKL 375
                     +   +     L             +    I         G +       L
Sbjct: 423 VKFTSEGHVALRVHLDGADRLVIVVEDSGPGIAPERQAAIFEKFVQADAGTAARFGGSGL 482

Query: 376 SDNNAIKPVMLYRSDRTCIAASAR----LHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
             + + + V L   + T  +        +  +        A   +     +    +  + 
Sbjct: 483 GLSISAQLVTLMNGELTLDSVVGEGSRFILRLPCEAAGEDAAVAVAPAARDSALLHDLRV 542

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468
            +  +    +   R M   +    +I+E  +  +A +
Sbjct: 543 LVAEDHDVNQELVRAMLERIGCSATIVEDGAQAVAAV 579


>gi|229035319|ref|ZP_04189227.1| hypothetical protein bcere0028_53140 [Bacillus cereus AH1271]
 gi|228727999|gb|EEL79067.1| hypothetical protein bcere0028_53140 [Bacillus cereus AH1271]
          Length = 603

 Score =  329 bits (844), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 103/532 (19%), Positives = 213/532 (40%), Gaps = 47/532 (8%)

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVD-----KCPIPFFVYSHGNLFYANPSFLLL 351
            +  E +      +     +   + T E ++                G++  AN ++  +
Sbjct: 96  GQVIEVVGSTVDITERKKVESELSATKELLESFIKHNLDAITISDREGHILQANKAYEKI 155

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ-WNRENS 410
             + S + I            P + D    + +   +   T  +   RL T++  +  + 
Sbjct: 156 FGWSSQEIIGKRL--------PCVPDFLMEESLENIQKILTGESVVTRLETVRQRSDGSL 207

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK-------MEIEVMQLCSILEATSD 463
           L ++       +     +  + I  +  + +  +R+       +    M+  +++E  +D
Sbjct: 208 LDISLTVSPILDVRGNVIALSAICRDISERKQAERERHRLHQQLRDSEMKYRALIEQATD 267

Query: 464 GIAI--INREG---IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
            + +  +N +      +  N    + FGY  E++L   F+  + Q++  ++   L +I  
Sbjct: 268 AVYVVELNEDNVPSRFIEVNPVGCRRFGYSREELLSLSFSNIVPQDSQMIVK-LLEKIKK 326

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578
                TL+   +  T +       + +  L     +     DI+E  + +  L  ++K+A
Sbjct: 327 GQTSFTLQDEYVFPTGKVITTEFSVRVFNLNGKKVFLSISRDITERLKTEELLRKSEKLA 386

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
                        ++HEI  PLTA+ GF +++K+       N     Y N +      + 
Sbjct: 387 VV-----GQLATAMAHEINNPLTAMKGFMQLLKSTE-----NENNQGYINIVSSEIERIE 436

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
            I N+ + ++K +  K+ L+     +   + + + L+Q  A    I IR      IP I 
Sbjct: 437 SITNEFMTVAKPQVVKIQLN----DISVLMDQVLMLLQPQAMMNNIKIRIDLNPGIPLIS 492

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
            +   +KQ+ +NI+ NAI   P GG+I+I      N ++ +R  D G G+    +    +
Sbjct: 493 CEGNQLKQVFVNIVKNAIESMPMGGEILIQLNILDNNQLSIRFIDQGCGIPKERIPYLGE 552

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           PF        I+ EG GLGL +   +++ + GK +I S   KGT +E+  P+
Sbjct: 553 PFY------SIKEEGIGLGLMICYKIIETHQGKIFIESEVNKGTTVEVTLPI 598



 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 72/202 (35%), Gaps = 9/202 (4%)

Query: 392 TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV 451
                +  +  + W  + ++ +         +  + +   G   +  + +  + ++    
Sbjct: 65  QAWEGNEIIFELPWPNDKTIILI--ALRPIKRNGQVIEVVGSTVDITERKKVESELSATK 122

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
             L S ++   D I I +REG IL  N+A  K+FG+  ++I+ K     +          
Sbjct: 123 ELLESFIKHNLDAITISDREGHILQANKAYEKIFGWSSQEIIGKRL-PCVPDFLMEESLE 181

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS----LTMHDISEWKQE 567
            + +IL           T+    +  LL + + +  +               DISE KQ 
Sbjct: 182 NIQKIL-TGESVVTRLETVRQRSDGSLLDISLTVSPILDVRGNVIALSAICRDISERKQA 240

Query: 568 KNKLSHAKKIAEKESSHKSDFL 589
           + +     +   ++S  K   L
Sbjct: 241 ERERHRLHQQL-RDSEMKYRAL 261



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 47/150 (31%), Gaps = 5/150 (3%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG-KTT 148
           D  G++ + ++   K  G  + ++IG RL  V D L  +   +I  +L  ++     +T 
Sbjct: 140 DREGHILQANKAYEKIFGWSSQEIIGKRLPCVPDFLMEESLENIQKILTGESVVTRLETV 199

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +G+ L + + ++  PI              I               RL ++     
Sbjct: 200 RQRSDGSLLDISLTVS--PILDVRGNVIALS--AICRDISERKQAERERHRLHQQLRDSE 255

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKN 238
              +       +   +          R   
Sbjct: 256 MKYRALIEQATDAVYVVELNEDNVPSRFIE 285


>gi|262395232|ref|YP_003287086.1| aerobic respiration control sensor protein ArcB [Vibrio sp. Ex25]
 gi|262338826|gb|ACY52621.1| aerobic respiration control sensor protein ArcB [Vibrio sp. Ex25]
          Length = 784

 Score =  329 bits (844), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 88/406 (21%), Positives = 174/406 (42%), Gaps = 19/406 (4%)

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
               +         +E E       + ++      L S ++A+ D I   N +G+    N
Sbjct: 122 RIKAEEAREEAMQDLENEVFQRERTQLELAERTALLRSFIDASPDLIYYRNADGVFSGCN 181

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
           RA+ +L G     ++         +     +     ++ + +   T E+        +  
Sbjct: 182 RAMEELTGKKEHQLVGLSPWDVYSKEIAEHIVDTDQKVFADNQAITYEQWLEYPDGRKHY 241

Query: 539 LSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
             LR +                 DI+E K+ +  L       EK S  K+ F++ +SHE+
Sbjct: 242 FELRKVPFYSKDGRHLGLVGFGRDITERKRHEESL-------EKASRDKTTFISTISHEL 294

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTPL  I+G S ++ +            ++   I+ S   + +I ND++D+ K +  K+ 
Sbjct: 295 RTPLNGIVGLSRMLLDSPL----TEEQRKHMQTINVSAITLGNIFNDIIDMDKFDRRKLE 350

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNA 715
           L   P++ ++ V+E  S+  L A +K +       +++P+ I  D   ++Q+  N++SNA
Sbjct: 351 LLPAPLNFEDFVAEIESISALMAEQKGLRFDLERLSDLPKAIEVDATRLRQVIWNLVSNA 410

Query: 716 IHFTPSGGQI-IISTTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGE 772
           + FT  GG +  +S     +   +I+ V DTG+G+   EL+K    + Q+ + +      
Sbjct: 411 MKFTKEGGVVMTVSADVEDDFATIIMEVEDTGIGIPEDELDKIFAMYYQVKSGKDNLHAV 470

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF--PLYDTSHP 816
           GTG+GL ++K +++   G   + S    G+   +    P+ +   P
Sbjct: 471 GTGIGLAVSKQLINMMDGDITVASEEGFGSTFTVSIHVPIVELEEP 516



 Score = 46.9 bits (110), Expect = 0.015,   Method: Composition-based stats.
 Identities = 16/129 (12%), Positives = 37/129 (28%), Gaps = 5/129 (3%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID-PNNHIGDLLKRQNTWYGKTT 148
           +A G     +  + +  G    +++G+   DV      +   +    +         +  
Sbjct: 172 NADGVFSGCNRAMEELTGKKEHQLVGLSPWDVYSKEIAEHIVDTDQKVFADNQAITYEQW 231

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           L   +G       +L  +P YS++    G  GFG               ++  +  +   
Sbjct: 232 LEYPDGR--KHYFELRKVPFYSKDGRHLGLVGFG--RDITERKRHEESLEKASRDKTTFI 287

Query: 209 EIKKGHSSV 217
                    
Sbjct: 288 STISHELRT 296


>gi|188579431|ref|YP_001922876.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi
           BJ001]
 gi|179342929|gb|ACB78341.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi
           BJ001]
          Length = 957

 Score =  329 bits (844), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 98/753 (13%), Positives = 207/753 (27%), Gaps = 54/753 (7%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY-GKTT 148
                    ++   + +G+     +G R  ++   +       +   +  + TW      
Sbjct: 88  GPDLAFVY-NDAYAEILGDKHPAALGRRFREIWPEIWEAITPFVDSAMAGEATWAENLPF 146

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                G +       +  PI + +    G   F                +  + + S L 
Sbjct: 147 TMNRHGYDEQTTFTFSYSPIRNEDGTVGGM--FCSCTETTARVRAEEALRASEARASGLL 204

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHL--RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
           E       +  + + I    +    L  R  ++V   + +  +            L    
Sbjct: 205 EGMGEGFMLLDQDFRILQMNAEGLRLEERPPDQVVGRSHWEVYPGSEAMPIGQMYLRVMR 264

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
             +    +   +  + +          +    +  Y              E E       
Sbjct: 265 ERVSRTLEHRYVWPDGHAVWLEVRAYPHPEGLALFYRDVTERREREDALREAEARFQTIA 324

Query: 327 DKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
           +      +         Y N  +   T           G     +  P        +   
Sbjct: 325 NSIDQMVWSTRADGYHDYYNQRWYDFTGVP---AGTTDGAAWEGIVHPD-DRERTWEVWS 380

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
              +         RL   + +               +   +     G   +  D    + 
Sbjct: 381 ASLASGEPYRIEYRL---RHHTGQHRWTLGRALPMRDATGQVTRWFGTCTDIQDIVEARD 437

Query: 446 KMEIEVMQLCSIL-------EAT----SDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
            +     +L  ++       +      +D + +   +  I + N A + L G+   D++ 
Sbjct: 438 VLARSREELEGLVTERTADRDRMWRLSTDIMLVARYDATIEAVNPAWTTLLGWDERDLVG 497

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554
             F   +  +  +     + E+       TL        K+     L             
Sbjct: 498 GAFMDLVHPDDVAPTLAEVGELSEGRT--TLRFENRYRHKDGSYRWLSWTAVPAED--RI 553

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKES--SHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
                D++  K+    L+  ++   +             ++H+    LT I G  E +  
Sbjct: 554 HAVGRDVTAEKEAAQALAETEEALRQSQKMEAVGQLTGGIAHDFNNLLTGISGSLE-LLQ 612

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
            R           Y      +      + + LL  S+    +  L   P  ++  +    
Sbjct: 613 TRMSQGRLTEIDRYMTAAQGAAKRAAALTHRLLAFSR----RQTLEPRPTDVNGLIHGME 668

Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
            L++       + I    A  +   L D   ++   LN+  NA    P GG+I + T + 
Sbjct: 669 ELIR-RTVGPAVHIEVVGAGGLWPALVDPGQLENALLNLCINARDAMPEGGRITVETANR 727

Query: 733 -------------SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
                          + + L V DTG GM+   + KA  PF          G+GTGLGL 
Sbjct: 728 WLDHHAARERDLPPGQYLSLCVTDTGTGMSADVVAKAFDPFFTTKP----IGQGTGLGLS 783

Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
           +       + G+  I+S   +GT + +  P + 
Sbjct: 784 MIYGFAKQSGGQVRIYSEIGQGTTVCLYLPRHH 816



 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/340 (11%), Positives = 97/340 (28%), Gaps = 17/340 (5%)

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQ-YTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
                L   +++LP          +   T         +   +  E +   +  S    +
Sbjct: 2   APTESLAGGKTTLPAAFPIQAPPQSMSETSPSTTAAFLSGGGQMGERMRANDWSSSPLGW 61

Query: 316 DEGENLTPETVDKCPIP-----FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
            E       +V    +      F  +     F  N ++  +   K    +          
Sbjct: 62  PETWPQALRSVASLMLGSRFPMFAAWGPDLAFVYNDAYAEILGDKHPAALG------RRF 115

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR-ENSLAMTFIPFEKANQFPENMP 429
                    AI P +          A     T+  +  +     TF      N+      
Sbjct: 116 REIWPEIWEAITPFVDSAMAGEATWAENLPFTMNRHGYDEQTTFTFSYSPIRNEDGTVGG 175

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
                 E       +  +     +   +LE   +G  +++++  IL  N    +L   P 
Sbjct: 176 MFCSCTETTARVRAEEALRASEARASGLLEGMGEGFMLLDQDFRILQMNAEGLRLEERPP 235

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
           + ++ +        +    +      ++   + +TLE   +    +   + L +     P
Sbjct: 236 DQVVGRSHWEVYPGSEAMPIGQMYLRVMRERVSRTLEHRYVW--PDGHAVWLEVRAYPHP 293

Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
                +L   D++E ++ ++ L  A+   +  ++     +
Sbjct: 294 E--GLALFYRDVTERREREDALREAEARFQTIANSIDQMV 331



 Score = 91.2 bits (225), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 28/389 (7%), Positives = 91/389 (23%), Gaps = 44/389 (11%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI-GDLLKRQNTWYGKT 147
           +D    + +++ E  +       +++G    +V       P   +   +++ + +   + 
Sbjct: 214 LDQDFRILQMNAEGLRLEERPPDQVVGRSHWEVYPGSEAMPIGQMYLRVMRERVSRTLEH 273

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                +G    V +++ A P         G   F          +     +  + +F  +
Sbjct: 274 RYVWPDGHA--VWLEVRAYPH------PEGLALF--YRDVTERREREDALREAEARFQTI 323

Query: 208 HEIKKGHSSVEKEKY--DIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
                      +     D ++Q+                       D  +        S 
Sbjct: 324 ANSIDQMVWSTRADGYHDYYNQRWYDFTGVPAGTTDGAAWEGIVHPDDRERTWEVWSASL 383

Query: 266 ESSLPE--QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
            S  P   +                   +++ + +   +              +    + 
Sbjct: 384 ASGEPYRIEYRLRHHTGQHRWTLGRALPMRDATGQVTRWFGTCTDIQDIVEARDVLARSR 443

Query: 324 ETVDKC---------------PIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLS 367
           E ++                      V  +   +   NP++  L  +   D +  A    
Sbjct: 444 EELEGLVTERTADRDRMWRLSTDIMLVARYDATIEAVNPAWTTLLGWDERDLVGGA---- 499

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
                    D+ A     +              +  +    +   +++      +     
Sbjct: 500 --FMDLVHPDDVAPTLAEVGELSEGRTTLRFE-NRYRHKDGSYRWLSWTAVPAED----- 551

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
              + +  +    +   + +      L  
Sbjct: 552 -RIHAVGRDVTAEKEAAQALAETEEALRQ 579



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 56/502 (11%), Positives = 128/502 (25%), Gaps = 52/502 (10%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL-LKRQNTWY 144
            W+  A GY    ++      G  A    G     +      +    +    L     + 
Sbjct: 331 VWSTRADGYHDYYNQRWYDFTGVPAGTTDGAAWEGIVHPDDRERTWEVWSASLASGEPYR 390

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            +  L    G   +      ALP+     + +  R FG     +   + R +  R  ++ 
Sbjct: 391 IEYRLRHHTG--QHRWTLGRALPMRDATGQVT--RWFGTCTDIQDIVEARDVLARSREEL 446

Query: 205 SHLH-----------EIKKGHSSVEKEKYDIFSQQSPPPHL---RMKNKVSSLTEYYAHK 250
             L             +      V +    I +       L     ++ V        H 
Sbjct: 447 EGLVTERTADRDRMWRLSTDIMLVARYDATIEAVNPAWTTLLGWDERDLVGGAFMDLVHP 506

Query: 251 DDVLKT-EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
           DDV  T  +   L+   ++L  +  +   + +           ++        ++     
Sbjct: 507 DDVAPTLAEVGELSEGRTTLRFENRYRHKDGSYRWLSWTAVPAEDRIHAVGRDVTAEKEA 566

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
           + +    E      + ++         + G     N     ++   S++ ++       L
Sbjct: 567 AQALAETEEALRQSQKME----AVGQLTGGIAHDFNNLLTGISG--SLELLQTRMSQGRL 620

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT-----FIPFEKANQF 424
            +  +                   +A S R        + +  +                
Sbjct: 621 TEIDRYMTAAQGAAKRAAALTHRLLAFSRRQTLEPRPTDVNGLIHGMEELIRRTVGPAVH 680

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL---EATSDGIAIINREGIILSTNRAV 481
            E +   G+ P  VD    +  +      L   +   +A  +G       G I       
Sbjct: 681 IEVVGAGGLWPALVDPGQLENAL------LNLCINARDAMPEG-------GRITV--ETA 725

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
           ++   +        P   +L             ++++           +G   +   L L
Sbjct: 726 NRWLDHHAARERDLPPGQYLSLCVTDTGTGMSADVVAKAFDPFFTTKPIG---QGTGLGL 782

Query: 542 RIIIKKLPFSSCYSLTMHDISE 563
            +I      S        +I +
Sbjct: 783 SMIYGFAKQSGGQVRIYSEIGQ 804


>gi|163939391|ref|YP_001644275.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           weihenstephanensis KBAB4]
 gi|229132383|ref|ZP_04261237.1| hypothetical protein bcere0014_13190 [Bacillus cereus BDRD-ST196]
 gi|229166419|ref|ZP_04294175.1| hypothetical protein bcere0007_13910 [Bacillus cereus AH621]
 gi|163861588|gb|ABY42647.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           weihenstephanensis KBAB4]
 gi|228616993|gb|EEK74062.1| hypothetical protein bcere0007_13910 [Bacillus cereus AH621]
 gi|228651089|gb|EEL07070.1| hypothetical protein bcere0014_13190 [Bacillus cereus BDRD-ST196]
          Length = 591

 Score =  329 bits (844), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 82/365 (22%), Positives = 158/365 (43%), Gaps = 27/365 (7%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            ++ E  QL SIL + +DG+  +N+EG ++  N           E+   +          
Sbjct: 249 ALQQEKEQLASILSSMADGVVTLNQEGEVVVINPPAEHFLQVWQEEKEVELIKKL----- 303

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
           PS +      ++  + +Q +E        +   + L   +            + D++E +
Sbjct: 304 PSELVELFHLVVESEQQQVVEINLQ----KGNYVVLMTPLYNQTKIRGAVAVLRDMTEER 359

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + +                + DF+A VSHE+RTP+  + G+SE I +            E
Sbjct: 360 RLE--------------KMRQDFIANVSHELRTPMVMLQGYSEAILDDIVQT--KEEINE 403

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           +   I      +  +VN+LLD++++ESG + LH   V +   V +     Q  A +K + 
Sbjct: 404 FVQIIYDESVRLGKLVNELLDLARMESGHVELHIGEVDIHPFVEKIGRKFQGIAKDKEVQ 463

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +   F + I +   D   ++Q+  N++ NAI  T +GG + +     ++  +   V+D+G
Sbjct: 464 LTVDFQSPIEQYPFDADRMEQVLTNLIDNAIRHTNAGGHVTLVINTKNSG-LTFEVQDSG 522

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGE-GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
            G+   ++      F +   ++    + GTGLGL +AK +V  + GK ++ S   +GT  
Sbjct: 523 AGIPEEDIPFLFDRFYKADKARTRGKKIGTGLGLAIAKNIVQGHDGKIFVSSVVGEGTTF 582

Query: 805 EIIFP 809
            +  P
Sbjct: 583 SVYLP 587


>gi|260642788|ref|ZP_05417328.2| two-component system sensor histidine kinase [Bacteroides
           finegoldii DSM 17565]
 gi|260620539|gb|EEX43410.1| two-component system sensor histidine kinase [Bacteroides
           finegoldii DSM 17565]
          Length = 669

 Score =  329 bits (844), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 100/513 (19%), Positives = 192/513 (37%), Gaps = 25/513 (4%)

Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDI 360
            L      S          +    +DK       V   G L YAN  F+          I
Sbjct: 145 VLIMCRDISERVATQRQLEVFKSVLDKVSDSILAVSKDGTLVYANKQFIEEYGVTKELGI 204

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
           +    L   +   +  +    +     R +    A  A    +   ++    ++      
Sbjct: 205 QKVYDLPVSMTTKEAWEKRLQEI----RDNDGSFAYRAAYVRMGETKKRVHQVSSFLTH- 259

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR--EGIILSTN 478
                E         +  D    + ++      L  IL      + + +   E   L  N
Sbjct: 260 ---ENEQELIWFFTQDITDVIKKRDELRELNQLLDGILNNIPVYLFVKDPADEFKYLYWN 316

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
           +A ++  G P    +        +            E+L    R  +++  L +  E ++
Sbjct: 317 KAFAEHSGIPASKAIGHTDYEIFQSEEAEKFRKDDLELLRTHQRIDIQETYLTANGEARI 376

Query: 539 LSLRIIIKKLPFSSCY-SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
           +     +  +            D +  +  + +L  A+  AE+    KS FLA +SHEIR
Sbjct: 377 VQTLKALVPMEDREPLLIGISWDTTNLQNIEQELIKARIKAEQSDRLKSAFLANMSHEIR 436

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TPL AI+GFS+++               Y++ I+++ +++L ++ND+LD+SKIE+G +  
Sbjct: 437 TPLNAIVGFSQLL----PTADTPEEQKLYSDIINQNSDILLQLINDILDLSKIEAGTLEY 492

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
              P++L E      ++ +       +           ++  D   + QI  N ++NA  
Sbjct: 493 VKRPINLGEVCRTIYAVHKERIKG-GVDFIFDNGEEDLQMEGDPNRIMQIITNFITNATK 551

Query: 718 FTPSGGQIIISTTHTSNEE-VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
           FT +G    I        E V + V+DTG+G+   ++    + F ++ +      +GTGL
Sbjct: 552 FTHAG---EIRFGFEREGENVRVYVKDTGIGIEKEKVGHIFERFVKLNSF----VQGTGL 604

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GL + + +++   G+  + S   KG+    I P
Sbjct: 605 GLSICRMIIEKIGGEIGVTSEFGKGSTFYFIIP 637



 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/127 (14%), Positives = 37/127 (29%), Gaps = 5/127 (3%)

Query: 457 ILEATSDGIAIINREGI-ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           IL +  D + + +   I I   +   +   G   ED +       +       ++  +  
Sbjct: 51  ILNSLPDMLTVFDHNEIGIEVVSNEETNHVGVTNEDFVGMHMRNMVPPEAYQNIHSNMQH 110

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575
            ++                  K       I  L       +   DISE    + +L   K
Sbjct: 111 AVATGAVSAAHHEL---DFNGKRHYYENRIFPL-DEKYVLIMCRDISERVATQRQLEVFK 166

Query: 576 KIAEKES 582
            + +K S
Sbjct: 167 SVLDKVS 173



 Score = 40.8 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/169 (12%), Positives = 41/169 (24%), Gaps = 11/169 (6%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTWYGKTTLW 150
                  ++   +  G  A K IG    ++      +       +LL+       + T  
Sbjct: 309 EFKYLYWNKAFAEHSGIPASKAIGHTDYEIFQSEEAEKFRKDDLELLRTHQRIDIQETYL 368

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
              G    V    A +P+  R     G     I        +      +   K      +
Sbjct: 369 TANGEARIVQTLKALVPMEDREPLLIG-----ISWDTTNLQNIEQELIKARIKAEQSDRL 423

Query: 211 KKGHSSVEKEKYD-----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254
           K    +    +       I       P      +    ++      D+L
Sbjct: 424 KSAFLANMSHEIRTPLNAIVGFSQLLPTADTPEEQKLYSDIINQNSDIL 472


>gi|115360386|ref|YP_777523.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria AMMD]
 gi|115285714|gb|ABI91189.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ambifaria
           AMMD]
          Length = 768

 Score =  329 bits (844), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 96/507 (18%), Positives = 186/507 (36%), Gaps = 29/507 (5%)

Query: 317 EGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
                    +   P         G + Y N + + L      D          L    + 
Sbjct: 124 AARRQLDAVLQALPDGVIATDAQGRITYVNAAAIALAGGALEDA-TGRPVRDVLHVFDRD 182

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
                  P+    +    ++    LH    +    + +        +          +  
Sbjct: 183 DRPVQPTPLERALAGAHALSDRHWLHGA--DGSPPVPIVEAASPIVDAHGSLDGAVLLLR 240

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
           +       +R +        ++++A+ D I  I+REG I+S N A  ++FGY   D   +
Sbjct: 241 D----AGTERALAEVSRLQRAVVDASPDAIVGIDREGRIVSWNPAAQRIFGYDEADARGR 296

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555
           P    +         + L +              L   ++ +     +    +   +   
Sbjct: 297 PLETLVAMRWLR--RNPLADSFDAMREAVGPLELLCVRRDGRRFRATVSAGPVRGDARNC 354

Query: 556 LTM------------HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
           + +             D+   ++       A+  A+  +  K + LA VSHE+RTPL  I
Sbjct: 355 VALSLTLRETGAQRRRDL-RTQRSLQGARDARDRADTSNRLKDELLATVSHELRTPLNVI 413

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
            G+ EV++N R   L      +  + IDRS   +  +V D+LD S + +GK+ +   PV 
Sbjct: 414 YGWIEVLRNTRDDALE----QQAIDAIDRSARSLTRMVGDILDASSLATGKLRIDPMPVD 469

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
           +    S+ +   Q  A+   I++    A +   +  D   ++Q+  N++SNA+ FTP GG
Sbjct: 470 VVRLFSDTVGAFQTAASSAGIVLEFECAASACVVSGDAERLRQMLANLVSNALKFTPGGG 529

Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
            + ++ +   +   +L V DTG G+    +      F +  +S      G GLGL + + 
Sbjct: 530 AVTVTLS-RDDAHAVLVVADTGQGIPPAFIPHVFDMFRRADDSPASPRRGLGLGLSIVRH 588

Query: 784 MVDANMGKFYIFST-PAKGTLIEIIFP 809
           +   + G+  + S    +G    +  P
Sbjct: 589 IAGLHGGQVRVESAGRNRGATFTVTLP 615



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 35/377 (9%), Positives = 84/377 (22%), Gaps = 20/377 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID----PNNHIGDLLKRQNTWY 144
            DA G +  ++       G       G  + DV  +   D        +   L   +   
Sbjct: 143 TDAQGRITYVNAAAIALAGGALEDATGRPVRDVLHVFDRDDRPVQPTPLERALAGAHALS 202

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGF----RGFGIVHVNRVDNDPRALGKRL 200
            +  L   +G+   VPI  AA PI   +    G     R  G        +  +      
Sbjct: 203 DRHWLHGADGSP-PVPIVEAASPIVDAHGSLDGAVLLLRDAGTERALAEVSRLQRAVVDA 261

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
                   + +    S       IF         R    + ++     +           
Sbjct: 262 SPDAIVGIDREGRIVSWNPAAQRIFGYDEADARGRPLETLVAMRWLRRNPLADSFDAMRE 321

Query: 261 LLTSEE--------SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
            +   E                   +  +         TL+    +    L  +     +
Sbjct: 322 AVGPLELLCVRRDGRRFRATVSAGPVRGDARNCVALSLTLRETGAQRRRDLRTQRSLQGA 381

Query: 313 AYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEI--AGGLSTLL 370
               +  + +    D+  +    +           ++ + +    D +E      +    
Sbjct: 382 RDARDRADTSNRLKDEL-LATVSHELRTPLNVIYGWIEVLRNTRDDALEQQAIDAIDRSA 440

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
            +      + +    L             +  +  +   +            +F      
Sbjct: 441 RSLTRMVGDILDASSLATGKLRIDPMPVDVVRLFSDTVGAFQTAASSAGIVLEFECAASA 500

Query: 431 NGIEPEDVDTRINKRKM 447
             +  +    R     +
Sbjct: 501 CVVSGDAERLRQMLANL 517


>gi|83816271|ref|YP_444615.1| sensory histidine protein kinase [Salinibacter ruber DSM 13855]
 gi|83757665|gb|ABC45778.1| sensory histidine protein kinase [Salinibacter ruber DSM 13855]
          Length = 2002

 Score =  329 bits (844), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 137/768 (17%), Positives = 268/768 (34%), Gaps = 60/768 (7%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            +D  G L   +  + +  G    ++  M   D+ +           +          +  
Sbjct: 1239 LDEQGDLLFWNRRVNEVTGYTDAELEAMTALDLFEGDDAARIRDAIEESAAGQAVRVEAP 1298

Query: 149  LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
            L   +G    VP +       +  R   G    GI        + R   +R +++F  L 
Sbjct: 1299 LVTKDGR--RVPHEFVGDAFDAPTR---GRVLCGIGRDVTQQKERRRALRRANQRFEQLA 1353

Query: 209  EIKKGHS-SVEKEKYDIFSQQSPPPHL------RMKNKVSSLTEYYAHKDDVLKTEKYPL 261
            E        V  +  ++    S    L       +++  S+ T +    D          
Sbjct: 1354 ETVPNAFYIVTPDYSELLYANSAVETLYGVDRDTLRDNPSAWTRHVHPADLAALRSDIEA 1413

Query: 262  LTSEESSLPEQEDFH--TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
              ++E   P+ ++F        +         + ++              +     ++  
Sbjct: 1414 QNADEPRWPQHQEFRVLHPTRGRRWLTARIDAIYDDEGALQRLAGVTTDVTDQKVREQRL 1473

Query: 320  N-LTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSV-------DDIEIAGGLSTLLD 371
              L   T D   +       G       +       +         D +  AG + + + 
Sbjct: 1474 RTLYRVTRDLLDVS---TKAGAASTVTDALGDTLGLQEAAVYLRDGDVLVRAGTIDSEVV 1530

Query: 372  APKLSDNNAIKPVMLYRSDRTCIAAS----------------ARLHTIQWNRENSLAMTF 415
                       P+    S     A S                     +      ++    
Sbjct: 1531 GSMPRVEQGHTPLWAALSTGDTHAYSDPSTIDDGVDRSGLEGCAYVPLGQRGVLAVGAAA 1590

Query: 416  IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG-IAIINREGII 474
                  ++            + +D    +R +     +  ++ E   +G + + +     
Sbjct: 1591 QNRLDDDELRLLEVVAQSFQDTLDALDQERDLIERERRYRTLAENIPNGAVFLFDEGLTY 1650

Query: 475  LSTNRAVSKLFG---YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
                 A  +L G       D+L       L                +L+  QT  +I +G
Sbjct: 1651 TL---AAGELLGTYELGESDLLGAQAGTVLVGIEGGRHPIVDRFEAALEGEQTDRRIGVG 1707

Query: 532  STKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
                 + L + ++  +   ++   +   DI+E  +++ +L  AKK AE+ +  KS  LA 
Sbjct: 1708 ----GRTLRVHVVPLQGDTNAKGLMLAQDITENVRKERELMSAKKAAEEANRMKSSLLAN 1763

Query: 592  VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR------YIEYANYIDRSGNLVLDIVNDLL 645
            +SHEIRTPLT+I+GF+E+I+ +                 E+A  I +SG  ++D +  +L
Sbjct: 1764 MSHEIRTPLTSILGFAEMIEEEIGSLEPPAEAGDLKPLGEFAGLIQKSGQRLMDTLTGVL 1823

Query: 646  DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
            ++S++E+G+M+L  EPV L E   E    ++  A  + + ++           AD   V+
Sbjct: 1824 NLSRLEAGEMDLAAEPVDLSEQAREVAGELRPQAEAEGLRLQVQAGGEPIWAQADGGGVQ 1883

Query: 706  QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
             +  N++SNAI +T  G +I +   +  N   ++ V D+G+GM   ++E   KPF Q   
Sbjct: 1884 IVLRNLVSNAIKYTDDG-EIRLRV-YRENGSAMIEVEDSGIGMDPEKIEDLFKPFRQASE 1941

Query: 766  SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
                  EGTGLGL + +  V+   G   + +   KGT I +  P  ++
Sbjct: 1942 GMAREYEGTGLGLAVTREAVEQMDGSIEVETEKGKGTTIRVQLPKEES 1989



 Score =  128 bits (322), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 61/506 (12%), Positives = 143/506 (28%), Gaps = 40/506 (7%)

Query: 90   DAH-GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            DA  G + E +      +G    ++IG    D+      +        L R++       
Sbjct: 986  DAETGKIVEANAAATGLLGRPREEIIGAHQTDLHPSGRAEAYAS----LFRRSLDEDGPM 1041

Query: 149  LWPIEGTNLY--------VPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
                +GT +         VP+++ A  +   +        +G+          +    R 
Sbjct: 1042 RALPDGTQIEVVTDEGTTVPVEVNATTVDLPDGRVV----YGVFRDVSERKAMQKRLTRR 1097

Query: 201  DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
            +++F  + E       +  E+     Q +         +   L        + L  E+  
Sbjct: 1098 ERRFRMMFEGHSAPMLLIDEETGAIEQANAAAVEFYGYERDILMSMSIQDINQLPAEEVA 1157

Query: 261  LLTSEESSLPEQEDFHT--INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
                E +   ++  F     +    T +     + N  +      S  +  +      + 
Sbjct: 1158 RERREAAEDGDEFLFEHELASGAVRTVRVLSAPIPNLDRAGTLLFSVIHDVTQREEHRQD 1217

Query: 319  ENLTPETVDKCPIPF-----FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
                   +D+           +   G+L + N     +T Y   + +E    L       
Sbjct: 1218 LADQKAFLDQVLDTIDDVFYLLDEQGDLLFWNRRVNEVTGYTDAE-LEAMTALDLF---- 1272

Query: 374  KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
            +  D   I+  +   +    +   A L  +  +              A      +   GI
Sbjct: 1273 EGDDAARIRDAIEESAAGQAVRVEAPL--VTKDGRRVPHEFVGDAFDAPTRGRVL--CGI 1328

Query: 434  EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG-IILSTNRAVSKLFGYPVEDI 492
              +    +  +R +     +   + E   +   I+  +   +L  N AV  L+G   + +
Sbjct: 1329 GRDVTQQKERRRALRRANQRFEQLAETVPNAFYIVTPDYSELLYANSAVETLYGVDRDTL 1388

Query: 493  LRKP--FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
               P  +T  +     + +   +    + + R    +             L   I  +  
Sbjct: 1389 RDNPSAWTRHVHPADLAALRSDIEAQNADEPRWPQHQEFRVLHPTRGRRWLTARIDAIYD 1448

Query: 551  SSCYS----LTMHDISEWKQEKNKLS 572
                         D+++ K  + +L 
Sbjct: 1449 DEGALQRLAGVTTDVTDQKVREQRLR 1474



 Score =  120 bits (302), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 51/505 (10%), Positives = 134/505 (26%), Gaps = 38/505 (7%)

Query: 97   EISEELPKTIGNYAFKMIGMRLCDVSDILHI-DPNNHIGDLLKRQNTWYGKTTLWPIEGT 155
            +  E L    G+           ++     + D    + ++     +W G   L+  E  
Sbjct: 870  QWDETLQDLFGHDPQTF--EAFTEIVHPNDLPDVEAALENMTSTGESWEGDFWLFHPEEG 927

Query: 156  NLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHS 215
               +   L A P++ +       R  GI        + +       +++  L +      
Sbjct: 928  VARMS--LRATPVHEKGEAV---RVLGIATDVTAQWERQRDLATSRERYQTLLQANPDPV 982

Query: 216  SVEKEKYDIFSQQSPPP---HLRMKNKVSSLTEYYAHKDDVLKT-----EKYPLLTSEES 267
             V   +     + +        R + ++    +   H     +       +         
Sbjct: 983  LVADAETGKIVEANAAATGLLGRPREEIIGAHQTDLHPSGRAEAYASLFRRSLDEDGPMR 1042

Query: 268  SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV- 326
            +LP+      +     T          +  +           S      +          
Sbjct: 1043 ALPDGTQIEVVTDEGTTVPVEVNATTVDLPDGRVVYGVFRDVSERKAMQKRLTRRERRFR 1102

Query: 327  -----DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
                    P+       G +  AN + +    Y+  D +             +L      
Sbjct: 1103 MMFEGHSAPMLLIDEETGAIEQANAAAVEFYGYER-DILMSMSIQD----INQLPAEEVA 1157

Query: 382  KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
            +       D         L +          +  +     N          +  +     
Sbjct: 1158 RERREAAEDGDEFLFEHELAS-----GAVRTVRVLSAPIPNLDRAGTLLFSVIHDVTQRE 1212

Query: 442  INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
             +++ +  +   L  +L+   D   +++ +G +L  NR V+++ GY   ++         
Sbjct: 1213 EHRQDLADQKAFLDQVLDTIDDVFYLLDEQGDLLFWNRRVNEVTGYTDAELEAMTALDLF 1272

Query: 502  EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS---LRIIIKKLPFSSCYSLTM 558
            E +  + +   + E  +    +         TK+ + +    +                 
Sbjct: 1273 EGDDAARIRDAIEESAAGQAVRV---EAPLVTKDGRRVPHEFVGDAFDAPTRGRVLCGIG 1329

Query: 559  HDISEWKQEKNKLSHAKKIAEKESS 583
             D+++ K+ +  L  A +  E+ + 
Sbjct: 1330 RDVTQQKERRRALRRANQRFEQLAE 1354



 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 43/504 (8%), Positives = 137/504 (27%), Gaps = 39/504 (7%)

Query: 95  LKEISEELPKTIGNYAFKMIG--MRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPI 152
           L  ++       G      +   M     +      P       L     W G+  +   
Sbjct: 243 LAYVNSSEEHIFGRPTDAFVRDPMLWRSAAHPKD-QPELPTARDLLEHGRWRGEYRVLRP 301

Query: 153 EGTNLYVP--IDLAALPIYS--RNREFSG-FRGFGIVHVNRVDNDPR--------ALGKR 199
           +GT  +V   + +   P +S    R      +  GI                   AL + 
Sbjct: 302 DGTARWVETAVQVIGRPPFSSQDERALDAPVKLAGITQDIHQRKQAEASVQEKSAALAEE 361

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSSLTEYYAHKDDVL--- 254
             +    L     G              +       +    + +     + H DD     
Sbjct: 362 KTRLRVALGAADAGVFEWSIPDDRRVWDERTQALFGVDAAPQTTGALLGHVHPDDRGHLQ 421

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
            T    L T ++ +   +      +      +     L++   ++   +      +    
Sbjct: 422 DTMARVLGTPDKETCQVRYRIRRPDREDRHVQARARILRDEDGDAERLIGTYQDVTERRR 481

Query: 315 FDEGENLTPETVDKC-----PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
             +         +        +   +   G L   N + L        + +  +    T 
Sbjct: 482 RRQKLRRRERQFEAVFQDPNLLTGLLDLDGTLRRVNDTALSFINAGREEVVGQSFW-ETP 540

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
                 +    ++  +   +    ++   +             +        ++      
Sbjct: 541 WWDHDSALQADLQEWIQRAAGGEYVSYQYQHVD---ADGLEYTIRGTIRPVTDRDGAVTA 597

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
                 +       +R++E+    L   +E +++G+A++  +   +  ++  + ++G+  
Sbjct: 598 LIASGRDVTAREDQRRELEV----LHQAVEDSTEGMAVLAGD-EYVYVDQTHADMYGFDD 652

Query: 490 ED-ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
           ++ +L   + +   ++    +   +  +L  +     + +  G   +       + +  +
Sbjct: 653 KEQLLGNTWRMLYGEDEIERLEKTVFPVLEEEGHW--QGLVTGQRPDGSTFPAALSLT-V 709

Query: 549 PFSSCYSLTMHDISEWKQEKNKLS 572
             +     T+ ++++ +    K  
Sbjct: 710 TEAGRLVCTVRNMTDRRNRNRKRQ 733



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 44/494 (8%), Positives = 119/494 (24%), Gaps = 35/494 (7%)

Query: 96  KEISEELPKTIGNYAFKMIGMRLCDV---SDILHIDPNNHIGDLLKRQNTWYGKTTLWPI 152
           + +++     I     +++G    +         +  +            +        +
Sbjct: 514 RRVNDTALSFINAGREEVVGQSFWETPWWDHDSALQADLQEWIQRAAGGEYVSYQYQ-HV 572

Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212
           +   L   I     P+  R+   +     G     R         + L+     + +  +
Sbjct: 573 DADGLEYTIRGTIRPVTDRDGAVTALIASG-----RDVTAREDQRRELEVLHQAVEDSTE 627

Query: 213 GHSSVEKEKYDIFSQQSPPP-HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271
           G + +  ++Y    Q          K ++   T    + +D ++  +  +    E     
Sbjct: 628 GMAVLAGDEYVYVDQTHADMYGFDDKEQLLGNTWRMLYGEDEIERLEKTVFPVLEEEGHW 687

Query: 272 QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI 331
           Q        +  T           +      + +           +      ET     I
Sbjct: 688 QGLVTGQRPDGSTFPAALSLTVTEAGRLVCTVRNMTDRRNRNRKRQLLLTASET----GI 743

Query: 332 PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR 391
             +    G +                                   D + ++       D 
Sbjct: 744 AEWDLQAGQI--------RWDGMLRNIFGRAPESTDDFFALIHPEDRSRVRDGFDSVVD- 794

Query: 392 TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV 451
           +  + +        +       T        +  E         +  + +          
Sbjct: 795 SASSWNGEFRIEDGDGRTRWIETL--VIPIFEDGEVGRLLASGTDVTERK-------ERQ 845

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
            +L   L  T  G+   N +   +  +  +  LFG+  +      FT  +  N    +  
Sbjct: 846 RKLDLALAGTDTGVLEWNLQTGEMQWDETLQDLFGHDPQTFEA--FTEIVHPNDLPDVEA 903

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-CYSLTMHDISEWKQEKNK 570
            L  + S       +       +    +SLR         +        D++   + +  
Sbjct: 904 ALENMTSTGESWEGDFWLFHPEEGVARMSLRATPVHEKGEAVRVLGIATDVTAQWERQRD 963

Query: 571 LSHAKKIAEKESSH 584
           L+ +++  +     
Sbjct: 964 LATSRERYQTLLQA 977



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/398 (8%), Positives = 104/398 (26%), Gaps = 25/398 (6%)

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
                  +         +     + P     +++            D   +  +  +   
Sbjct: 256 RPTDAFVRDPMLWRSAAHPKDQPELPTARDLLEHGRWRGEYRVLRPDGTARWVETAVQVI 315

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
                  Q++                             +  +    SA   E +     
Sbjct: 316 GRPPFSSQDE--------RALDAPVKLAGITQDIHQRKQAEASVQEKSAALAEEKTRLRV 367

Query: 325 TVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
            +       F +S   +    +     L    +      A      L      D+     
Sbjct: 368 ALGAADAGVFEWSIPDDRRVWDERTQALFGVDAAPQTTGA------LLGHVHPDDRGHLQ 421

Query: 384 VMLYRSDRTCIAASARLH-TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             + R   T    + ++   I+        +        ++  +     G   +  + R 
Sbjct: 422 DTMARVLGTPDKETCQVRYRIRRPDREDRHVQARARILRDEDGDAERLIGTYQDVTERRR 481

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            ++K+     Q  ++ +  +    +++ +G +   N           E+++ + F     
Sbjct: 482 RRQKLRRRERQFEAVFQDPNLLTGLLDLDGTLRRVNDTALSFINAGREEVVGQSFWETPW 541

Query: 503 QNTPSVMNHYLTE-ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLT 557
            +  S +   L E I      + +         +    ++R  I+ +            +
Sbjct: 542 WDHDSALQADLQEWIQRAAGGEYVSYQYQHVDADGLEYTIRGTIRPVTDRDGAVTALIAS 601

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
             D++  + ++ +L    ++  +     ++ +A ++ +
Sbjct: 602 GRDVTAREDQRREL----EVLHQAVEDSTEGMAVLAGD 635



 Score = 42.3 bits (98), Expect = 0.31,   Method: Composition-based stats.
 Identities = 34/320 (10%), Positives = 77/320 (24%), Gaps = 44/320 (13%)

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365
                    FD   +L    +D  PI    +      +      L  +   +D       
Sbjct: 53  VIDTPPEETFDRIADLAAALLD-VPIGLVTFVGDQKQWHKACIGLDAQGLGLDASFCVHT 111

Query: 366 LST--LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
           L     L     +++       L   D       A    I  +      +  +  E    
Sbjct: 112 LDEGQRLVVEDATEDERFDDNPLVTEDPHVR-FYAGAPMITPDGHVLGTVCVLDTEPRAP 170

Query: 424 FPENMPQNGIEPEDVDTRINKRK-----------MEIEVMQLCSILEATSDGIAIINRE- 471
               +       +    ++ +R+            E +  +L  +L +  D +  +    
Sbjct: 171 SERQLTGLDDLAQMGVDQLERRRRQKISAVEQGGAESDETRLNELLASLDDAVWEVRIHP 230

Query: 472 ----------GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
                       +   N +   +FG P +  +R P  +             L     L  
Sbjct: 231 TGSSEAEPVRHELAYVNSSEEHIFGRPTDAFVRDP--MLWRSAAHPKDQPELPTARDLLE 288

Query: 522 RQTLEKITLGSTKEEKLLSLRIII-------------KKLPFSSCYSLTMHDISEWKQEK 568
                        +     +   +             + L      +    DI + KQ +
Sbjct: 289 HGRWRGEYRVLRPDGTARWVETAVQVIGRPPFSSQDERALDAPVKLAGITQDIHQRKQAE 348

Query: 569 NKLSHAKKIAEKESSHKSDF 588
             +   ++ +   +  K+  
Sbjct: 349 ASV---QEKSAALAEEKTRL 365


>gi|118581023|ref|YP_902273.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
 gi|118503733|gb|ABL00216.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
          Length = 1134

 Score =  329 bits (844), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 93/754 (12%), Positives = 216/754 (28%), Gaps = 59/754 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + +D    +   +    +++G    ++  M + D       +   +     ++++    
Sbjct: 281 IFRLDQDMNVLYANRHACESLGYSREELCRMSVFDFDPQFRREDLPNHLKKRQQRHCMTF 340

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +      +G    V I    L              F                K  ++ +S
Sbjct: 341 EAVHRNRDGVIFPVEITSTHLEYQGEEF------LFSFARDITERKRAEQALKEQEELYS 394

Query: 206 HLHEIKKG---HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
            +             E  ++  F+  +       + + + L+    + +   +  +  + 
Sbjct: 395 VIFNQAPDGVVLVDAETLEFREFNDTACAGLGYSREEFARLSVADINPEYDKEWHRSHIN 454

Query: 263 TSEESSLPEQEDFH-TINLNQYTKKQYFGTLQNNSKES--FEYLSHRNHPSLSAYFDEGE 319
                +    E  H   N +    +    T+Q          +        L       E
Sbjct: 455 EIISRNYGVFETIHRHRNGSLRNMRISVRTVQIRGCRYLLSFWTDTTEQARLQEELRLRE 514

Query: 320 NLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
                 +D  P   ++    G     N          S  ++           AP    +
Sbjct: 515 YYQRALLDNFPSAAWIKDREGRFLAVNRQLATFLGLASPQELVDKTIHD---VAPSALAD 571

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
                     +          L            +   P        + +   G   +  
Sbjct: 572 QNTAEDRRVLTSGRPKHDEEELPV--SGENRWFEVYISPVSID---GQVVGTVGCNWDVT 626

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRKPF 497
           + +  ++ +     +   ++E + D I I +     +  N+A ++L G    E++  +  
Sbjct: 627 ERKKIEQNLRESEERYRRLVELSPDAIFIHSGN-RFVFMNQAAARLLGAKTPEELYGRKP 685

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK--LPFSSCYS 555
             F+  +   ++   +   L       +E   +    +   + + ++             
Sbjct: 686 LDFIHPDQREMVGQRIDRALERRDNPPIE-ELMVRL-DGSTVPVEMVSVHHTYRGKDAVL 743

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
               DISE  + +++   ++K+              ++H+    L+ I+G    +   R 
Sbjct: 744 AIARDISERMKIQDERVRSQKL-----ESLGLLAGGIAHDFNNILSGILGNI-SLVCSRL 797

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
            P  +          +++      +   LL  ++          + +     + E+ + V
Sbjct: 798 DP--DDPLASRLKSCEKATIRATGLTRQLLTFAR----GGEPVRKVIDPAPLIRESATFV 851

Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST------ 729
                   +         +  I  D   + Q+  N++ NA H  P GG IIIS       
Sbjct: 852 ---LRGTNVKGDIRMTEGLSCINVDAGQISQVLNNLIINATHSMPGGGVIIISAMNEALH 908

Query: 730 -----THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
                     + + + V+D G G+    L K   P+            G+GLGL  A A+
Sbjct: 909 EGNAFNLAPGDYLRITVQDQGCGIPPENLPKIFDPYFTTKR------RGSGLGLASAYAI 962

Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
           +  + G   + S    GT   +  P     H  D
Sbjct: 963 IRRHGGAIEVSSRVGVGTTFTLRLPAQPQVHAAD 996



 Score =  135 bits (340), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 43/507 (8%), Positives = 122/507 (24%), Gaps = 45/507 (8%)

Query: 87  WNIDA-HGYLKEISEELPKTIGNYAFKMIGMR--LCDVSDILHIDP-NNHIGDLLKRQNT 142
           W  D        + +E    +G    + +  +            +     + +  ++  +
Sbjct: 29  WECDPLTLRFSHVDQEAESILGYPCRQWVEEQDFWQAHIPTDDAEQCAIQLREAAEKGES 88

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
              +  +   +G  ++    +  LP    +    G     ++ ++        L    ++
Sbjct: 89  REFEHRMAAADGRTVWFRTIVTPLPTEGGSIRLQGV----MIDISESRQTRMLLQSSEER 144

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT------EYYAHKDDVLKT 256
               +     G         +++        L                  +        T
Sbjct: 145 FQRAMLGANDGIWDWNLLTDEVYFSPRWKEMLGYAEHELENNLDSWSYLTHPADLQATLT 204

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
                +     +   +      + +           +++       +      +     +
Sbjct: 205 LIKDYVEGRSDTFEAEFRMRHRDGHYICVLSRGLLARDDDGRGTRLVGTHVDITRQRRAE 264

Query: 317 EGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIE-IAGGLSTLLDAPK 374
           E   L    +D+ P+  F      N+ YAN        Y   +                 
Sbjct: 265 EELYLARYCLDQAPMGIFRLDQDMNVLYANRHACESLGYSREELCRMSVFDFDPQFRRED 324

Query: 375 LSDNNAIKPVM--------LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
           L ++   +               D            +++  E  L               
Sbjct: 325 LPNHLKKRQQRHCMTFEAVHRNRDGVIFPVEITSTHLEYQGEEFL--------------- 369

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLF 485
                    +  + +  ++ ++ +      I     DG+ +++ E       N       
Sbjct: 370 ----FSFARDITERKRAEQALKEQEELYSVIFNQAPDGVVLVDAETLEFREFNDTACAGL 425

Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
           GY  E+  R        +        ++ EI+S       E I        + + + +  
Sbjct: 426 GYSREEFARLSVADINPEYDKEWHRSHINEIIS-RNYGVFETIHRHRNGSLRNMRISVRT 484

Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLS 572
            ++           D +E  + + +L 
Sbjct: 485 VQIRGCRYLLSFWTDTTEQARLQEELR 511



 Score =  130 bits (328), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 33/352 (9%), Positives = 89/352 (25%), Gaps = 17/352 (4%)

Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291
           P  +   +      +    D      +      +  S   +      +      +     
Sbjct: 52  PCRQWVEEQDFWQAHIPTDDAEQCAIQLREAAEKGESREFEHRMAAADGRTVWFRTIVTP 111

Query: 292 LQNNSKESF---EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNL-FYANPS 347
           L             +               E      +       + ++      Y +P 
Sbjct: 112 LPTEGGSIRLQGVMIDISESRQTRMLLQSSEERFQRAMLGANDGIWDWNLLTDEVYFSPR 171

Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
           +  +  Y   +        S L     L    A   ++    +       A    ++   
Sbjct: 172 WKEMLGYAEHELENNLDSWSYLTHPADLQ---ATLTLIKDYVEGRSDTFEAE-FRMRHRD 227

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
            + + +        +         G   +    R  + ++ +        L+    GI  
Sbjct: 228 GHYICVLSRGLLARDDDGRGTRLVGTHVDITRQRRAEEELYLA----RYCLDQAPMGIFR 283

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
           ++++  +L  NR   +  GY  E++ R       + +           +     R  +  
Sbjct: 284 LDQDMNVLYANRHACESLGYSREELCRMSV---FDFDPQFRREDLPNHLKKRQQRHCMTF 340

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKI 577
             +   ++  +  + I    L +           DI+E K+ +  L   +++
Sbjct: 341 EAVHRNRDGVIFPVEITSTHLEYQGEEFLFSFARDITERKRAEQALKEQEEL 392



 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 56/573 (9%), Positives = 144/573 (25%), Gaps = 63/573 (10%)

Query: 96  KEISEELPKTIGNYAFKMIG--MRLCDVSDILHIDPN-NHIGDLLKRQ-NTWYGKTTLWP 151
              S    + +G    ++         ++    +      I D ++ + +T+  +  +  
Sbjct: 166 VYFSPRWKEMLGYAEHELENNLDSWSYLTHPADLQATLTLIKDYVEGRSDTFEAEFRMRH 225

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
            +G   Y+ +    L     +    G R  G                             
Sbjct: 226 RDGH--YICVLSRGLLARDDDGR--GTRLVGTHVDITRQRRAEEELYLARYCLDQAP--M 279

Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271
                 +       ++ +       + ++  ++ +        +     L   ++     
Sbjct: 280 GIFRLDQDMNVLYANRHACESLGYSREELCRMSVFDFDPQFRREDLPNHLKKRQQRHCMT 339

Query: 272 QEDFHTINLNQYTKKQYFGT---LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
            E  H          +   T    Q                       E E L     ++
Sbjct: 340 FEAVHRNRDGVIFPVEITSTHLEYQGEEFLFSFARDITERKRAEQALKEQEELYSVIFNQ 399

Query: 329 CPIPFFVYSHGNLFY--ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
            P    +     L +   N +      Y   +                ++D N       
Sbjct: 400 APDGVVLVDAETLEFREFNDTACAGLGYSREE-----------FARLSVADINPEYDKEW 448

Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ-NGIEPEDVDTRINKR 445
           +RS    I +         +R  + ++  +                    +  +    + 
Sbjct: 449 HRSHINEIISRNYGVFETIHRHRNGSLRNMRISVRTVQIRGCRYLLSFWTDTTEQARLQE 508

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRKPFTVFLEQN 504
           ++ +      ++L+       I +REG  L+ NR ++   G    ++++ K         
Sbjct: 509 ELRLREYYQRALLDNFPSAAWIKDREGRFLAVNRQLATFLGLASPQELVDKTIHDVAPSA 568

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISE 563
                      +L+    +  E+     + E +   + I    +            D++E
Sbjct: 569 LADQNTAEDRRVLTSGRPKHDEEELPV-SGENRWFEVYISPVSIDGQVVGTVGCNWDVTE 627

Query: 564 WKQEKNKLSHAKKIAEK-------------------ESSHKSDFLARVSHEIRTPLTAII 604
            K+ +  L  +++   +                    +   +  L       +TP     
Sbjct: 628 RKKIEQNLRESEERYRRLVELSPDAIFIHSGNRFVFMNQAAARLLGA-----KTP----- 677

Query: 605 GFSEVIKNQRFGPLGNPRYIEYA-NYIDRSGNL 636
              E +  ++     +P   E     IDR+   
Sbjct: 678 ---EELYGRKPLDFIHPDQREMVGQRIDRALER 707



 Score = 83.9 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 18/252 (7%), Positives = 65/252 (25%), Gaps = 21/252 (8%)

Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399
              + +     +  Y     +E        +             +              R
Sbjct: 37  RFSHVDQEAESILGYPCRQWVEEQDFWQAHIPTDDAEQCAI--QLREAAEKGESREFEHR 94

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459
           +         ++    I      +   ++   G+  +  ++R  +  ++    +    + 
Sbjct: 95  MAA---ADGRTVWFRTIVTPLPTEGG-SIRLQGVMIDISESRQTRMLLQSSEERFQRAML 150

Query: 460 ATSDGIA----IINREGIILSTNRAVSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYL 513
             +DGI     + +     +  +    ++ GY   ++      ++              +
Sbjct: 151 GANDGIWDWNLLTDE----VYFSPRWKEMLGYAEHELENNLDSWSYLTHPADLQATLTLI 206

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKN 569
            + +      T E       ++   + +                   T  DI+  ++ + 
Sbjct: 207 KDYVE-GRSDTFEAEFRMRHRDGHYICVLSRGLLARDDDGRGTRLVGTHVDITRQRRAEE 265

Query: 570 KLSHAKKIAEKE 581
           +L  A+   ++ 
Sbjct: 266 ELYLARYCLDQA 277


>gi|75909433|ref|YP_323729.1| multi-sensor signal transduction histidine kinase [Anabaena
           variabilis ATCC 29413]
 gi|75703158|gb|ABA22834.1| multi-sensor signal transduction histidine kinase [Anabaena
           variabilis ATCC 29413]
          Length = 650

 Score =  329 bits (844), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 96/414 (23%), Positives = 181/414 (43%), Gaps = 30/414 (7%)

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINK--RKMEIEVMQLCSILEATSDGIAIINREGI 473
           I      +  E +       E ++    +   ++  E  +L +++   +DG  +I+    
Sbjct: 238 IDLPLGGELGELILNFNEMAERLERYEEQNIEELTAEKAKLETLVSTIADGAVLIDNNMQ 297

Query: 474 ILSTNRAVSKLFGYP-VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
           ++  N     +FG+   +D++       L       +   L E+ + +      ++TL  
Sbjct: 298 VILVNPTARHIFGWEGADDVVGSNVLHHLPPTVQMEITRPLYEMAAGECDSAEFRLTLNQ 357

Query: 533 TKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
                +  L   +  L   S    ++T+ DI+                 + +  KS F++
Sbjct: 358 PSNRTIRILLTTVLNLQRESIKGIAITVQDITR--------------EVELNEAKSQFIS 403

Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650
            VSHE+RTPL  I  F E + +     L      E+   ++   + +  +VND+LD+SK+
Sbjct: 404 NVSHELRTPLFNIKSFIETLHD-YGEDLSIEERQEFLQTVNHETDRLTRLVNDVLDLSKL 462

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710
           ESG+ +  F+ V L +A+ + +   QL A +K I +    A  +P +L +   + Q+  N
Sbjct: 463 ESGR-SYSFDGVDLAQAIEQTLRTYQLNAKDKGIELIQDVAPGLPLVLGNYDLLLQVLAN 521

Query: 711 ILSNAIHFTPSGGQIIIST--------THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
           ++ NA+ FTPSGG+I I T        +     +V + V DTG+G+   + +     F +
Sbjct: 522 LVGNALKFTPSGGKIAIRTYVLHTKPNSPNQPTQVRIEVSDTGIGIAPEDQQAIFDRFFR 581

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           + N +    EGTGLGL + + +V+ +  K  + S    GT       L++   P
Sbjct: 582 VEN-RVHTLEGTGLGLSIVRNIVERHRSKVNLVSEVGVGTTFWFDLILFEDEAP 634


>gi|330826610|ref|YP_004389913.1| PAS/PAC sensor signal transduction histidine kinase [Alicycliphilus
           denitrificans K601]
 gi|329311982|gb|AEB86397.1| PAS/PAC sensor signal transduction histidine kinase [Alicycliphilus
           denitrificans K601]
          Length = 829

 Score =  329 bits (844), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 112/634 (17%), Positives = 218/634 (34%), Gaps = 35/634 (5%)

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP-----PHLRMKNKVS 241
                    L +      +H+        +  +E     + Q  P     P    ++   
Sbjct: 207 ADTSGARILLVRSDGHVLAHVGPGADAPGASLREHPRFHAFQGAPRGSFGPLRVREDLTL 266

Query: 242 SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301
                          E+    T+       +     + L          +   N++    
Sbjct: 267 GAWHRLDAYPLTALVEQPYATTTARWLRALRGPLLFMALATVLIGLMTRSAWRNARAREA 326

Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDI 360
                +         + E              F     G + + NP +  LT        
Sbjct: 327 AQLKLDEIR--KATAQREQELSILFKSVKELIFRTDAQGVIRFVNPRWRQLTGQVPAAA- 383

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
                    L      +++     +                 ++     +  +       
Sbjct: 384 -----RGRRLSDIVEPESSPTVAALFQA--GGSSGWRRSKACLRGPSGKTQVLEITVMPL 436

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
           A +  +     G   +       ++K++ ++     +LE+    + + + +G +++ N A
Sbjct: 437 AGRDGQPYGYAGSAVDITALDYAQKKLQHQLALTERVLESNPLPMCLTDVQGRLVTVNAA 496

Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
                G      L +     L        +    ++L      T+         +  +  
Sbjct: 497 WESFMGVSRSQALGRLNRDILPAAQAQAYDARTEQLLREG--GTVRYEERLPRADGSMRD 554

Query: 541 LRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
           ++I    L  +        +   DI+++          +  A++ S  KS+F+A +SHE+
Sbjct: 555 VQITKVLLQSAQGEPMGVLVNKLDITDFLAA-------RYKAQEASRTKSEFVANISHEL 607

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTPL +I+GFSE+            +Y      I  +G  +L +VNDLLDISKIES    
Sbjct: 608 RTPLQSILGFSEL---GMVRARQYEKYAAMFQDIHAAGQRMLGLVNDLLDISKIESTVGA 664

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNA 715
             F    + + + +  + +Q+    K + +R      +P +   D     Q+A N+LSNA
Sbjct: 665 FRFARNDVRDLLEDVAAELQMLLERKGLTLRLDL-GRVPLVSKVDSTRFAQVARNVLSNA 723

Query: 716 IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           + F+P GG I +S +      ++++VRD G G+   ELE     F Q   ++     GTG
Sbjct: 724 VKFSPEGGTIEMSASTPDESTILVQVRDHGPGIPPAELEAVFDAFVQSSKTRD-ESGGTG 782

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           LGL + + +V A+ G  +  + P  GT+  I+ P
Sbjct: 783 LGLAICRKIVTAHGGHIHATNAPDGGTIFHIVLP 816



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 27/246 (10%), Positives = 71/246 (28%), Gaps = 10/246 (4%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNT-- 142
             +  DA G ++ ++    +  G       G RL D+ +    + +  +  L +   +  
Sbjct: 355 LIFRTDAQGVIRFVNPRWRQLTGQVPAAARGRRLSDIVEP---ESSPTVAALFQAGGSSG 411

Query: 143 WYGKTTLWP-IEGTNLYVPIDLAALPIYSRNREFSGFRGFGI-VHVNRVDNDPRALGKRL 200
           W           G    + I +  +P+  R+ +  G+ G  + +               L
Sbjct: 412 WRRSKACLRGPSGKTQVLEITV--MPLAGRDGQPYGYAGSAVDITALDYAQKKLQHQLAL 469

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL-TEYYAHKDDVLKTEKY 259
            ++    + +    + V+     + +       +     +  L  +            + 
Sbjct: 470 TERVLESNPLPMCLTDVQGRLVTVNAAWESFMGVSRSQALGRLNRDILPAAQAQAYDART 529

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
             L  E  ++  +E     + +    +     LQ+   E    L ++   +         
Sbjct: 530 EQLLREGGTVRYEERLPRADGSMRDVQITKVLLQSAQGEPMGVLVNKLDITDFLAARYKA 589

Query: 320 NLTPET 325
                T
Sbjct: 590 QEASRT 595


>gi|218778045|ref|YP_002429363.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfatibacillum alkenivorans AK-01]
 gi|218759429|gb|ACL01895.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfatibacillum alkenivorans AK-01]
          Length = 989

 Score =  329 bits (844), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 111/785 (14%), Positives = 250/785 (31%), Gaps = 87/785 (11%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK 146
           +  D  G +  +S   PK +G    +++   + ++      D +  +  L         +
Sbjct: 232 YRTDLKGRITWVSPSTPKLLGYEMEEVLHRDIKNLFYFNPADRDKFLAKLNVTGKVTDAE 291

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
             L   +G+   + +   +          +G  G                  R   +   
Sbjct: 292 VKLKHKDGSP--IWVSTNSAYYKDAKGAVAGVEG--SFRDVSQRKRRMEEIARYQDRLEE 347

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPP------------HLRMKNKVSSLTEYYAHKDDVL 254
           + E +       ++KY    + S               + +         EY  +K  + 
Sbjct: 348 MVEERTRALVESEQKYRALFENSGNAIFVLAKDSVVDCNAKAAEVFGVPQEYLINKHPLA 407

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL----------- 303
            +        +   L E+         ++  +  +     +  +S   L           
Sbjct: 408 YSTPRQPGGEDSLILGEKLLARAFEGEEFFLEWRYQRPDGSIFDSEVILNPVSIGGVSFV 467

Query: 304 -SHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIE 361
                  +     +   ++  + ++       F      + Y NP+   +      D++ 
Sbjct: 468 IGTVADITERKQAEAQRSMLIKILESTSDMVSFSTPDMQITYINPAGRRILGLDKGDELP 527

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
           +   + T      +S   A   V                  +       + ++ +     
Sbjct: 528 LVKDVMTPEAFDIISREGAPAAVEHGHWSGET--------ALAMEDGTEIPVSQVIMSHK 579

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
           +        + I  +    +  + ++E     L +++++    +  ++ +G I   N   
Sbjct: 580 DAEGRVENFSTIIRDISGPKKTEEELERLRDFLSAVIDSMPSVLVGLDEQGRITRWNTKT 639

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
            +L G     +  +  +     N    +   + E +  +      K  +      +   +
Sbjct: 640 EELLGKTSAQVRGRLLSEVFPHN--PDILRMVDEAIENEKVSERLKAPIQFQGILRFWDV 697

Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
            +            + + D++E  + +  +  ++K+            A ++HEI  PL 
Sbjct: 698 TVYPLSESAMKGAVIRVDDVTERVRLEEMMIQSEKML-----SVGGLAAGMAHEINNPLA 752

Query: 602 AIIGFSEVIKNQRFGPLGN---------------PRYIE------YANYIDRSGNLVLDI 640
            II   +V++ +    L                  RY+E          I  SG     I
Sbjct: 753 GIIQNVQVLEKRLGTGLSKNHNVAEEAGTSMDAIARYLEKRDLLRVMQAIRESGGRAAAI 812

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK------RILIRTSFANNI 694
           VN++LD S+    K +  F P  L + + + I L     + K      +I I+  + + +
Sbjct: 813 VNNMLDFSR----KGDSAFLPQDLCQVMDQTIELASSDFDLKKRYDFRQIKIKKDYQDCM 868

Query: 695 PRILADLRSVKQIALNILSNAIHFT------PSGGQIIISTTHTSNEEVILRVRDTGVGM 748
           P+I  +   V+Q+ LN+L NA           +  +I I    + +++  + V D G GM
Sbjct: 869 PKIRCEKTKVQQVILNLLQNAAQAMAGQWDDDNPPEIAIRI-FSKDDKACIEVADNGPGM 927

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV-DANMGKFYIFSTPAKGTLIEII 807
                ++  +PF          G GTGLGL ++  +V + + G  ++ S P KG    I 
Sbjct: 928 DESVRKRVFEPFFTTK----EIGVGTGLGLSVSYFIVTENHNGTMHVESAPGKGAKFTIC 983

Query: 808 FPLYD 812
            P  +
Sbjct: 984 LPAEE 988



 Score = 93.9 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/268 (11%), Positives = 80/268 (29%), Gaps = 8/268 (2%)

Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
            D+      V S G     +     +        +  +G L   L     +D        
Sbjct: 93  ADRSQCLHLVSSSGRYSSLDGRHARVPFGAYKIGLIGSGALPDFLTNEVTTDPRV-HNHE 151

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
             +          RL +        LA+         +F             ++    + 
Sbjct: 152 WAKELGLQSFYGHRLLSDDGRVSGVLAVFSRHKIPPEEFTILRSLAVTATHAINAAYTEN 211

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            ++    +L ++ +   D     + +G I   + +  KL GY +E++L +        N 
Sbjct: 212 ALKESEARLRNVFDNMQDCFYRTDLKGRITWVSPSTPKLLGYEMEEVLHRDIKNLFYFN- 270

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDI 561
           P+  + +L ++         +       K+   + +         +         +  D+
Sbjct: 271 PADRDKFLAKLNVTGK--VTDAEVKLKHKDGSPIWVSTNSAYYKDAKGAVAGVEGSFRDV 328

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFL 589
           S+ K+   +++  +   E+    ++  L
Sbjct: 329 SQRKRRMEEIARYQDRLEEMVEERTRAL 356


>gi|326326124|ref|YP_004250934.1| putative sensor protein [Vibrio nigripulchritudo]
 gi|323669176|emb|CBJ93233.1| Putative sensor protein [Vibrio nigripulchritudo]
          Length = 688

 Score =  329 bits (844), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 99/377 (26%), Positives = 168/377 (44%), Gaps = 17/377 (4%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
                ++     +    + +  D +   +    I   +   S+           K     
Sbjct: 190 ATRTSELRQNRERFRDFVNSVGDCLWETDSSYRINYVSEVSSE-----KASFYGKKIQTI 244

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTM 558
           LE  +          I     +   +     +  +   LS+              Y  T+
Sbjct: 245 LEGESVCHQL----VIAMDARQPIRDLEWRYNADKGIWLSISGAPFYDLDGRFLGYRGTV 300

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            DIS+ K    +L  A+  AEK +  KS FLA +SHEIRTPL AI+G  +V+ ++     
Sbjct: 301 KDISQSKLRYLELKRARSEAEKANQAKSQFLATMSHEIRTPLNAILGLIDVLLSKCTDKN 360

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
                      ++ S  L+L I++D+LD+SKIESG++ L  + V++ + VS  +   QL 
Sbjct: 361 NTD----VLRMMESSAELLLAIISDVLDLSKIESGRVELSVKSVNVRDVVSGNLQHYQLV 416

Query: 679 ANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737
           ANEK + +    A++IP +I  D   + QI  N++ NA+ FT +G +I +       + +
Sbjct: 417 ANEKGLKLSLDLADDIPHQIHTDATRLSQILFNLVGNAVKFTEAG-EIRVKVIRQPGQTL 475

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
           ++RV DTG+G+    LEK  KPF Q   S   R  G+GLGL ++K +     G   + S 
Sbjct: 476 VIRVTDTGLGIDESVLEKVFKPFIQADGSITRRFGGSGLGLAISKQLAKLLGGDITVKSQ 535

Query: 798 PAKGTLIEIIFPLYDTS 814
             +G+   +  P+  ++
Sbjct: 536 RHQGSEFTLTLPIIHSA 552



 Score = 47.7 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/144 (13%), Positives = 40/144 (27%), Gaps = 20/144 (13%)

Query: 86  TWNIDAHGYLKEISE---ELPKTIGNYAFKMI-GMRLCDVSDILHIDPNNHIGDLLKRQN 141
            W  D+   +  +SE   E     G     ++ G     V   L I         +  + 
Sbjct: 214 LWETDSSYRINYVSEVSSEKASFYGKKIQTILEGES---VCHQLVI--------AMDARQ 262

Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
                   +  +     + + ++  P Y  +  F G+RG   V             KR  
Sbjct: 263 PIRDLEWRYNAD---KGIWLSISGAPFYDLDGRFLGYRG--TVKDISQSKLRYLELKRAR 317

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIF 225
            +    ++ K    +    +    
Sbjct: 318 SEAEKANQAKSQFLATMSHEIRTP 341


>gi|295706458|ref|YP_003599533.1| two-component sensor histidine kinase ResE [Bacillus megaterium DSM
           319]
 gi|294804117|gb|ADF41183.1| two-component sensor histidine kinase ResE [Bacillus megaterium DSM
           319]
          Length = 590

 Score =  329 bits (844), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 90/365 (24%), Positives = 160/365 (43%), Gaps = 25/365 (6%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            +  E  QL SIL + +DG+   +R+G IL TN            +   +          
Sbjct: 249 ALNQEKEQLSSILSSMADGVITFSRDGSILITNPPAEHFLQTWYYE---QDVNNQQVPEL 305

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
           P+ + H    ++  +  ++ E    G T     + L   +            + D+SE +
Sbjct: 306 PANVVHLFQTVVETETERSAELKIQGKT----WVILMSPLYNQTKIRGAVAVLRDMSEER 361

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           +                  + DF+A VSHE+RTP++ + G+SE I +       +    E
Sbjct: 362 KL--------------DKSRKDFIANVSHELRTPISMLQGYSEAIIDDI--ASTDEEKKE 405

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
            A  I      +  +VN+LLD++++E+G + LH E V++ E     +   Q  A EK I 
Sbjct: 406 IAQVIYDESLRMGRLVNELLDLARMEAGHVQLHLESVAMVEFTERVLRKFQGLAKEKHIK 465

Query: 686 IRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744
           +  +    +    + D   ++Q+  N++ NAI  T   G++ +    + + E+ L V+DT
Sbjct: 466 LSLNGKVEDEFEAMIDSDRMEQVLTNLIDNAIRHTDDYGEVKLHLDKSQS-EIHLSVQDT 524

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G G+   +L    + F +   ++     GTGLGL +AK +V+A+ G   + S   +GT  
Sbjct: 525 GAGIPKEDLPFVFERFYKADKARTRGKSGTGLGLAIAKNIVEAHQGIIAVESELNEGTTF 584

Query: 805 EIIFP 809
            I  P
Sbjct: 585 FIKLP 589


>gi|218779864|ref|YP_002431182.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218761248|gb|ACL03714.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 1177

 Score =  329 bits (844), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 109/701 (15%), Positives = 241/701 (34%), Gaps = 52/701 (7%)

Query: 124 ILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNRE-FSGFRGFG 182
           +  +D     GD +     +          G  L +P+ ++       +     G+  F 
Sbjct: 114 VYAVDGGGRDGDAILPNTPYNSPHPQLVSNGEPLQMPV-VSKRLYTDESGTWLKGYAPFF 172

Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS 242
                                   +        + ++              +        
Sbjct: 173 SSQGE-------------VAGILAMDVAASSIIARQRSFLKTALGVFGLSVVLAGFLGLI 219

Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302
           +    A   + L      +   + S   E+                   L     +    
Sbjct: 220 MGRKLAAPIEGLTRAVRAISQGDLSHRAEETAKDETGELARAFNAMSEKLSRAEDKIQ-- 277

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFF--VYSHGNLFYANPSFLLLTKYKSVDDI 360
           +  +         D+ E+      +   +  F   + +  +   N  F  +  YK+  ++
Sbjct: 278 IEVQERKEAQDALDQSEDNYQRLYENAHVGLFKTRFENDGITACNTRFARMLGYKTSQEV 337

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
                   L+  P    + A     L     +           +   +++  +       
Sbjct: 338 LG------LILGPDRYADPADYQ-RLRERLASLEDVEHFETLFKKVDDSAFWIRLSARLT 390

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
                      G+  +    +    +++    +   I E   +G+     EG  +S N A
Sbjct: 391 DQGE----SVEGMAIDFTTEKTAIEQIKSAEKKFRGIFENAQEGLFQCASEGSFISVNPA 446

Query: 481 VSKLFGYPVEDILRKPFTVFLEQ--NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
           ++++ GY     L +     + +   +P   + + +E+ +             + K+  L
Sbjct: 447 MARILGYDSPVELLQKLGPGVREIFFSPEEYSDFRSELEARGK--VAGMEVQFNKKDGSL 504

Query: 539 LS--LRIIIKKLPFSSCYS--LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
               +   + K   +       ++ DI E KQ +  +   K  A   +  K+ FLA +SH
Sbjct: 505 AWGSISATLVKNTETGALMLEGSLEDIEERKQHEAAILA-KNQAVAANQEKNRFLAALSH 563

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           E+RTP+TAIIG +E++           +  +Y   +  +   +L +V+D++DIS++++G+
Sbjct: 564 EMRTPMTAIIGMTELLNETGL----TQQQAQYIKLMKSANEQLLSLVSDVMDISRVDAGR 619

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILS 713
           + L   P +L E V +A   +   A+EK + +  S +   P  +L D   +KQ+  N++ 
Sbjct: 620 LKLETIPFNLLELVEKACETMAEKAHEKNLELACSVSPKTPIHLLGDPYRLKQVLNNLMQ 679

Query: 714 NAIHFTPSGGQIIISTTHTSNEE-------VILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
           NA+ FT  G +++++    +  +       +   V DTG+G+ +  L        +  + 
Sbjct: 680 NAVKFTEKG-EVVVTVRDAAEGDKKDGQAVIEFCVSDTGIGIPSKRLASLFDHMAKDNDV 738

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
                 GTG+GL +++ +V+   G F + S   +G+     
Sbjct: 739 DFHHYGGTGVGLSISRKLVEMMKGDFTVSSKLEQGSTFCFT 779



 Score = 43.1 bits (100), Expect = 0.21,   Method: Composition-based stats.
 Identities = 45/396 (11%), Positives = 106/396 (26%), Gaps = 42/396 (10%)

Query: 32  NGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDA 91
           N    + S+ E+       Q     Q+    S  NY                 F    + 
Sbjct: 263 NAMSEKLSRAEDKI-QIEVQERKEAQDALDQSEDNY------QRLYENAHVGLFKTRFEN 315

Query: 92  HGYLKEISEELPKTIGN-YAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150
            G +   +    + +G   + +++G+ L         D       L   ++  + +T   
Sbjct: 316 DG-ITACNTRFARMLGYKTSQEVLGLILGPDRYADPADYQRLRERLASLEDVEHFETLFK 374

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
            ++ +     I L+A  +  +     G                ++  K+    F +  E 
Sbjct: 375 KVDDSAF--WIRLSAR-LTDQGESVEGM-AIDFTTEKTAIEQIKSAEKKFRGIFENAQEG 430

Query: 211 KKG------HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
                      SV      I    SP   + +  K+           +     +  L   
Sbjct: 431 LFQCASEGSFISVNPAMARILGYDSP---VELLQKLGPGVREIFFSPEEYSDFRSELEAR 487

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
            + +   +  F+  + +          ++N    +                +        
Sbjct: 488 GKVA-GMEVQFNKKDGSLAWGSISATLVKNTETGALMLEGSLEDIEERKQHEA------- 539

Query: 325 TVDKCPIPFFVYSHGNLFYANP---SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
                     + +      AN     FL    ++    +    G++ LL+   L+   A 
Sbjct: 540 ---------AILAKNQAVAANQEKNRFLAALSHEMRTPMTAIIGMTELLNETGLTQQQAQ 590

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
              ++  ++   ++  + +  I       L +  IP
Sbjct: 591 YIKLMKSANEQLLSLVSDVMDISRVDAGRLKLETIP 626


>gi|242278589|ref|YP_002990718.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens
           DSM 2638]
 gi|242121483|gb|ACS79179.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens
           DSM 2638]
          Length = 832

 Score =  329 bits (844), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 92/385 (23%), Positives = 177/385 (45%), Gaps = 41/385 (10%)

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
              +++  +  +  I++  +DG+ +++  G I  TN A+ +LFG    ++  K    F  
Sbjct: 247 ATSELQDTLTYMEVIMDNLADGLLVVDINGKISVTNPALGELFGVTENELRGKDIRTFFP 306

Query: 503 QNTPSVMNHYLTEILSLDLRQTL--EKITLGSTKEEKLLSLRIIIKKLPFSS----CYSL 556
           +         L E++     +    E    G  K  K ++  I       +        +
Sbjct: 307 EE-----MTALFELVKGCEHEVYSSEIELTGR-KTGKAVATPIHKMDEGDTPNICLGAVI 360

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN---- 612
            + DI+  K+                + K+DF++ VSHE+RTP+T+I+GF+++IK     
Sbjct: 361 LVRDITYEKEV--------------DNLKTDFISTVSHELRTPMTSILGFAKIIKKKLEK 406

Query: 613 ---------QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
                     +       +  +    I   G  + +++ND+LDI+K+ESGK++    P+ 
Sbjct: 407 SVFPVCNAPDKKTERAINQVKDNIGIIVSEGQRLTELINDVLDIAKMESGKIDWKNVPID 466

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
           + E +  ++         + + +      NIP I  D   V Q+ +N++SNA+ FT SG 
Sbjct: 467 ISEVIETSVQTTTPLWKPQDLQMVVDVEENIPTIHGDRDRVMQVLVNLISNAVKFTASGS 526

Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
             I  T  +  +E+++ V DTG G++  + +K  + F Q  ++   + +GTGLGLP+ K 
Sbjct: 527 --ITCTARSHADEIMVSVSDTGSGISPEDQKKIFQRFKQAGDTLTGKPKGTGLGLPICKQ 584

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIF 808
           +VD + G+ ++ S   +G+      
Sbjct: 585 IVDHHKGRIWVDSKLGEGSSFHFTL 609


>gi|75907228|ref|YP_321524.1| multi-sensor signal transduction histidine kinase [Anabaena
           variabilis ATCC 29413]
 gi|75700953|gb|ABA20629.1| multi-sensor signal transduction histidine kinase [Anabaena
           variabilis ATCC 29413]
          Length = 646

 Score =  329 bits (844), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 105/519 (20%), Positives = 198/519 (38%), Gaps = 25/519 (4%)

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVD-DIEIAGGL 366
                  + +       +  P   +V+        Y N     L  +            L
Sbjct: 137 RSQEQLHDSQKFIERIAETTPGILYVHDLVEKRNVYINGKVGNLLGHTPQTIQNLGKEFL 196

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
            T +    L     +        D   I    R+     +       +       N    
Sbjct: 197 ITFMHPEDLVRLPQVFQQFDSAKDGDIIEHEYRMR--HADGGWCWFFSRNSVFMRNSDGS 254

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLF 485
                G   +    +  + ++     +      A +  I   + ++G +  T   ++++ 
Sbjct: 255 PRQIVGTAFDITARKQAEEELRSSNERFRLAAAAVNSLIYEWDIKKGTVTRT-EGLTRIL 313

Query: 486 GYPVEDILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           GY VE+     + +   +  +    +              T E        +   +  + 
Sbjct: 314 GYSVEEATPNIEWWQEQIHPDDQDFLVEQFQNPPVNQTHYTFEYRIRHKNNQYLYVLDQG 373

Query: 544 IIKKLPFSS--CYSLTMHDISEWKQEKNKLSH-------AKKIAEKESSHKSDFLARVSH 594
           II +           +  DIS+ K  + +          A+  AE  +  K +F+A VSH
Sbjct: 374 IITRDENGQPVRVVGSATDISDRKLAEAERDQLLQLEKLARAEAEAANQTKDEFVAMVSH 433

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           ++R+PL AI+G+S++++ ++   L    +      I+R+      ++ DLLD+S+I  GK
Sbjct: 434 DLRSPLNAILGWSQLLRTRQ---LDESTFTRALETIERNAQSQSKLLEDLLDMSRILRGK 490

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714
           + L F  V L   +  AI      A  K I +++    +IP I  D+  + Q+  N+LSN
Sbjct: 491 LQLEFCLVELPAIIGVAIETAYPSAKAKDIHLKSVIDESIPLIPGDINRLLQVLGNLLSN 550

Query: 715 AIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           AI FTP  GQI +  ++T + E  + V DTG+G+ +  L    + + Q     Q +  G 
Sbjct: 551 AIKFTPPEGQITVQLSYTDS-EAHITVIDTGIGIKSEFLPYVFERYRQAD--CQHKQHGL 607

Query: 775 GLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFPLYD 812
           GLGL +A+ +++ + G  ++ S    +GT   I  PL+ 
Sbjct: 608 GLGLAIARYLIELHGGAIHVNSLGEGQGTTFTIKLPLHQ 646


>gi|110801444|ref|YP_699043.1| sensory box histidine kinase [Clostridium perfringens SM101]
 gi|110681945|gb|ABG85315.1| sensory box histidine kinase [Clostridium perfringens SM101]
          Length = 571

 Score =  329 bits (844), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 84/375 (22%), Positives = 171/375 (45%), Gaps = 39/375 (10%)

Query: 444 KRKMEIEVMQ-------LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             ++EI + +       L +IL++   G+   +R+  +L  N    K+FG   E I  K 
Sbjct: 226 AEQLEITMERFKNKQNGLEAILKSMGSGVIAFDRDMNVLMINPYAKKIFGISGEIIGNKL 285

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR-IIIKKLPFSSCYS 555
                ++            +         E     +  + K+L +R   I   P      
Sbjct: 286 LDYITDKEVLKAFFDEKDRV---------EIEVNYND-DPKILKIRKASIINEPEIIGTV 335

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
           + + DI++ K+ +              + +S F+A +SHE++TPLT+I GF+E ++    
Sbjct: 336 VVIQDITDIKKLE--------------NMRSQFVADISHELKTPLTSIKGFAETLR---- 377

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
               +    ++ + ID   + +  ++ D+L + +IE  +  +  E  ++DE + +   L+
Sbjct: 378 YVDDDETRNKFLSIIDEESDRLARLLEDILCLYEIEQKRSTV-LEEFNVDEEIEKVYMLL 436

Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
              A +K + I     +N   ++ D    KQ+ LN++SN++ +T  GG++ +  ++  + 
Sbjct: 437 NDQAKKKGVEIFLDTHSNC-VLMGDKDKFKQMLLNLVSNSVKYTEKGGKVRVE-SYNRDM 494

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            +IL + D G+G++  +L +  + F ++  ++     GTGLGL + K +V    G+  + 
Sbjct: 495 NLILVIEDNGIGISAEDLPRIFERFYRVDKARSRESGGTGLGLAIVKHIVRLFDGEINVT 554

Query: 796 STPAKGTLIEIIFPL 810
           S    GT I I  P+
Sbjct: 555 SELGVGTKIVITIPI 569


>gi|150017913|ref|YP_001310167.1| PAS/PAC sensor hybrid histidine kinase [Clostridium beijerinckii
           NCIMB 8052]
 gi|149904378|gb|ABR35211.1| PAS/PAC sensor hybrid histidine kinase [Clostridium beijerinckii
           NCIMB 8052]
          Length = 669

 Score =  329 bits (844), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 106/527 (20%), Positives = 206/527 (39%), Gaps = 60/527 (11%)

Query: 319 ENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
             +    +        ++S  GN+   N   +    Y   + +         +   +  +
Sbjct: 17  LQIYEAAIRNANDIIILFSSQGNILEVNRKAVDTYGYTEAELLSKN------IFELRNRE 70

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
              +  +   ++    +           +   S  +             +     I  + 
Sbjct: 71  RIELAIMQFEKAKSGDVEFETIHF---KSDGTSFPVEVKSIGIE--ISNDRFVLSIIRDI 125

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
            +   ++ ++      L S++E T D I     +GII S N     ++GY  E+++ K  
Sbjct: 126 SNRMKSEAEIRG----LASLVENTEDAIIGKTLDGIITSWNIGAENIYGYKKEEVIGKHI 181

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL- 556
           ++ +     +     + +I + +  +     +    K  +L+ + I +  +       + 
Sbjct: 182 SIIIPDEKINDFYEIIKKIKNGE--RVRGFESKRRKKNGQLIDVSITVSPIYDFEGNLIG 239

Query: 557 ---TMHDISEWKQEK----------------------------NKLSHAKKIAEKESSHK 585
                 DI+E K+ +                             +L  AK+ A+K +  K
Sbjct: 240 ASNITRDITENKKVEKELRDKYEEISALYEELIAIEEELRSNYQELEKAKEEADKANKAK 299

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
           S+FLA +SHEIRTP+  IIG  +++K        N    EY + +  S  L+L I+N +L
Sbjct: 300 SEFLANISHEIRTPMNGIIGIIDLLKVTEL----NNNQKEYLDMLSNSSRLLLGILNTIL 355

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSV 704
           DISKIESGK  L  +P ++ + +      + +  ++K + +       I   ++ D   +
Sbjct: 356 DISKIESGKFELILKPFNMKKTLDRITKELSIACSKKNLEVFYYIDPYINFDLIGDEIRL 415

Query: 705 KQIALNILSNAIHFTPSGGQIIISTTH--TSNEE--VILRVRDTGVGMTNYELEKAMKPF 760
            Q+ +NI++NAI FT  G QI+       T+N +  +   V+DTG+G+         K F
Sbjct: 416 NQVLINIINNAIKFTEMG-QIMFKVRKLNTTNNKLTLEFSVKDTGIGIKEEFKNDIFKKF 474

Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
            Q   +   + +GTGLGL ++K +     G  +  S   KG+     
Sbjct: 475 IQQDMTYTKKYDGTGLGLAISKDIAKLMNGDIWFESIENKGSTFYFT 521



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/108 (14%), Positives = 31/108 (28%), Gaps = 5/108 (4%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG-KTTLW 150
            G +   +       G    ++IG  +  +     I+    I   +K      G ++   
Sbjct: 155 DGIITSWNIGAENIYGYKKEEVIGKHISIIIPDEKINDFYEIIKKIKNGERVRGFESKRR 214

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
              G  + V I ++  PIY       G     I      +       +
Sbjct: 215 KKNGQLIDVSITVS--PIYDFEGNLIGASN--ITRDITENKKVEKELR 258


>gi|300867000|ref|ZP_07111670.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
 gi|300334983|emb|CBN56836.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
          Length = 1290

 Score =  329 bits (844), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 131/704 (18%), Positives = 244/704 (34%), Gaps = 61/704 (8%)

Query: 130  NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALP-IYSRNREFSGFRG-------F 181
               I  +L+ +N    +     +  T + +P +   LP I+ R     G RG        
Sbjct: 487  EGEIAVILRSRN----EQIELEVRDTGIGIPAE--ELPQIFERFHRVQGARGRTYEGSGI 540

Query: 182  GIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS 241
            G+  V  +                    I    +  ++   D  +               
Sbjct: 541  GLSLVQELVRLHDGTISASSIVDQGTSFIVSIPTGCDRSVGDRINATRTLTSTATGATPY 600

Query: 242  SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301
                     +  L  E     ++   S  E         +   +      +  +      
Sbjct: 601  VEEVLRWLPEPDLGGETLDARSANSDSGLETTKIGFQADSLQAQNPKSKIVLADDNADMR 660

Query: 302  YLSHR--NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDD 359
                R  +         +G         + P                         +   
Sbjct: 661  NYVKRLLSQQYEVEAVKDGAAALAAIRGQLPDLVL---------------------TDVM 699

Query: 360  IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
            +    G   L +         +  ++L           +R+  ++   ++ L   F   E
Sbjct: 700  MPEVDGFELLRELRANPQTKELPIILLSARAGE----ESRIEGLEAGADDYLIKPFSARE 755

Query: 420  KANQFPENMPQNGIEPEDVDTRINKRK-MEIEVMQLCSILEATSDGIAIINREGIILSTN 478
               +   N+    +  E       +R+  E    QL S+L   SD   +++RE   L  N
Sbjct: 756  LLARVEANLKMAQLRQEATRREQAQRRVAEKAKEQLESVLSTISDQFLVLDREWRYLYVN 815

Query: 479  RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
              V +  G   E +L +           +  +  + + ++  +    E          + 
Sbjct: 816  DRVMETVGLEREALLGRSVWEVFPDVVGTEFDRQIQQAIAQQIPAHFEYYYST---WNRW 872

Query: 539  LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH-------AKKIAEKESSHKSDFLAR 591
                            ++ + +I++ K+ + +  H       A+  AE+ +  K +FLA 
Sbjct: 873  FENHAYPSP----EGITIFITEITDRKRAEQEREHLLAREQAARAEAERANRVKDEFLAI 928

Query: 592  VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
            VSHE+R+PL  I+G+S +++ Q+  P    +  +  N I R+  L  +++ DLLD+S+I 
Sbjct: 929  VSHELRSPLNPILGWSTLLQTQKLNP---AKTAQALNAIARNARLQAELIEDLLDLSRIL 985

Query: 652  SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
             GK++L+  P  L   +  A+  V+L A  K I I T F  +I  +L D   ++Q+  N+
Sbjct: 986  RGKLSLNVFPTDLASTIQSAMETVRLAAEAKSIQIHTMFEPDIGLVLGDSSRLQQVMWNL 1045

Query: 712  LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
            LSNAI FTP GG + I        +  + V DTG G+    L    + F Q  ++   + 
Sbjct: 1046 LSNAIKFTPEGGLVDIQLE-RCGAQAQIIVSDTGKGIDPDFLPYIFEYFRQENSATTRKF 1104

Query: 772  EGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFPLYDTS 814
             G GLGL +   +V+ + G     S    +G    +  PL  +S
Sbjct: 1105 GGLGLGLAIVHHLVELHGGTVEAESLGEGQGATFTVKLPLMQSS 1148



 Score =  261 bits (667), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 97/569 (17%), Positives = 190/569 (33%), Gaps = 59/569 (10%)

Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPS 347
             G    +   S+++      P           L+     + PI  + +    L   N +
Sbjct: 17  AGGGEMGSLMRSYDWSKTPLGPVEQWPQSLRSALSICLNSRFPIAIY-WGSDCLLLYNDA 75

Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR-TCIAASARLHTIQWN 406
           +  +   K    +   G     +     S+       +    +          +H   + 
Sbjct: 76  WRPIVGDKHPWSLGRPG---REVWPEIWSEIGPEFESVFRTGEGIFHHDELLAMHRFGYT 132

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM-------------- 452
            E     TF P +      + +     E         + ++  EV               
Sbjct: 133 EECFFDYTFNPIQGEGGEIDGILNIVSETTYRVLNDRRARLLREVASKTGTAKTTEEACK 192

Query: 453 QLCSILEATSDGI-----AIINREGIILSTNRAVSKLFGYPV------------EDILRK 495
            +   L +    I      +I+ EG     +      FG+              +D    
Sbjct: 193 LMAEALRSDPADIPFSLLYLIDLEGRYAHLSSGTQ--FGWDEHIAPAMVDLNAGDDPNGW 250

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDL----RQTLEKITLGSTKEEKL----LSLRIIIKK 547
           P    +    P  +++ +T    L          E + L      +     + + +   +
Sbjct: 251 PIARSVRTAQPQPIDNLVTRFGKLPGSPWPEPPQEAMVLPIAVTGQAKILGVLVAVASPR 310

Query: 548 LPFSSCYSLTMHDISEWK-------QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
                 Y      I+          +   +     +   +    K+ F + VSHE RTPL
Sbjct: 311 RRLDDRYRDFFAQITGQIATAIANARSYEEERRRAEQLAELDRAKTVFFSNVSHEFRTPL 370

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
           T ++G  E    +      + +  +    I R+   +  +VN LLD S+IE+G++   ++
Sbjct: 371 TLMLGPVE----EALQATQDAQQRDRLELIHRNALRLQKLVNTLLDFSRIEAGRIEAVYQ 426

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720
           P  L    ++   + +       + +R            D    ++I LN+LSNA  +T 
Sbjct: 427 PTDLAMLTTDLAGVFESAIARAGLHLRVDCPPLPEPTYVDREMWEKIVLNLLSNAFKYTF 486

Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
            G +I +      NE++ L VRDTG+G+   EL +  + F ++  ++    EG+G+GL L
Sbjct: 487 EG-EIAVILRSR-NEQIELEVRDTGIGIPAEELPQIFERFHRVQGARGRTYEGSGIGLSL 544

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            + +V  + G     S   +GT   +  P
Sbjct: 545 VQELVRLHDGTISASSIVDQGTSFIVSIP 573



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 56/485 (11%), Positives = 120/485 (24%), Gaps = 41/485 (8%)

Query: 82  TVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN 141
            +   W  D    L   ++     +G+     +G    +V   +  +       + +   
Sbjct: 59  PIAIYWGSD---CLLLYNDAWRPIVGDKHPWSLGRPGREVWPEIWSEIGPEFESVFRTGE 115

Query: 142 T--WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199
               + +       G       D    PI     E  G          RV ND RA   R
Sbjct: 116 GIFHHDELLAMHRFGYTEECFFDYTFNPIQGEGGEIDGILNIVSETTYRVLNDRRARLLR 175

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
                +   +  +    +  E         P   L     +  L   YAH     +    
Sbjct: 176 EVASKTGTAKTTEEACKLMAEALRSDPADIPFSLL----YLIDLEGRYAHLSSGTQFGWD 231

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR-NHPSLSAYFDEG 318
             +      L   +D +   + +  +      + N      +        P   A     
Sbjct: 232 EHIAPAMVDLNAGDDPNGWPIARSVRTAQPQPIDNLVTRFGKLPGSPWPEPPQEAMVLPI 291

Query: 319 ENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
                  +    +                F  +T   +             +   +  + 
Sbjct: 292 AVTGQAKILGVLVAVASPRRRLDDRYRDFFAQITGQIATA-----------IANARSYEE 340

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
              +   L   DR           +       L +   P E+A Q  ++  Q        
Sbjct: 341 ERRRAEQLAELDRAKTVF---FSNVSHEFRTPLTLMLGPVEEALQATQDAQQRDRLELIH 397

Query: 439 DTRINKRKM--------EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490
              +  +K+         IE  ++ ++ + T   +   +  G+  S              
Sbjct: 398 RNALRLQKLVNTLLDFSRIEAGRIEAVYQPTDLAMLTTDLAGVFESAIARAGLHLRVDCP 457

Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI--TLGSTKEEKL-LSLRIIIKK 547
            +    +          +    +  +LS   + T E     +  ++ E++ L +R     
Sbjct: 458 PLPEPTYV------DREMWEKIVLNLLSNAFKYTFEGEIAVILRSRNEQIELEVRDTGIG 511

Query: 548 LPFSS 552
           +P   
Sbjct: 512 IPAEE 516



 Score = 43.9 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 60/240 (25%), Gaps = 14/240 (5%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            +D       +++ + +T+G     ++G  + +V   +     +        Q        
Sbjct: 805  LDREWRYLYVNDRVMETVGLEREALLGRSVWEVFPDVVGTEFDRQIQQAIAQQIPAHFEY 864

Query: 149  LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
             +    +      +  A P         G   F  +             + L  +     
Sbjct: 865  YY----STWNRWFENHAYP------SPEGITIF--ITEITDRKRAEQEREHLLAREQAAR 912

Query: 209  EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT--EKYPLLTSEE 266
               +  + V+ E   I S +   P   +    + L     +     +           + 
Sbjct: 913  AEAERANRVKDEFLAIVSHELRSPLNPILGWSTLLQTQKLNPAKTAQALNAIARNARLQA 972

Query: 267  SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
              + +  D   I   + +   +   L +  + + E +               E      +
Sbjct: 973  ELIEDLLDLSRILRGKLSLNVFPTDLASTIQSAMETVRLAAEAKSIQIHTMFEPDIGLVL 1032


>gi|91773147|ref|YP_565839.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanococcoides burtonii DSM 6242]
 gi|91712162|gb|ABE52089.1| pleC-like multisensor signal transduction histidine kinase
           [Methanococcoides burtonii DSM 6242]
          Length = 507

 Score =  329 bits (844), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 114/496 (22%), Positives = 215/496 (43%), Gaps = 16/496 (3%)

Query: 311 LSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
            +   +E E      ++      F +   GN  Y +P+    T Y++ + +  +      
Sbjct: 23  ANKKIEEIEEFNKLHIENLNDVIFSINEQGNFTYISPAIEDFTGYRAEEVMGTSFM--QY 80

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
           +    L        + L   +         +  +     N   +         +  + + 
Sbjct: 81  IHPDDLPGLLQDIDLTL---EGEHKPY---MFRVVSKTGNITYVHTSS-RGILKNGKVVG 133

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
            NGI       ++ + ++  +  +    L+     I +I+ +  I   N+    L GY  
Sbjct: 134 INGIMVNIAQLKVIEFELMKQKEKAQHYLDVAGVAIIVIDNDHRISLVNKKACGLLGYKE 193

Query: 490 EDILRKPFTVFLEQNTPSV--MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
            ++L + +   +            +        L    E       K+ KL S +    K
Sbjct: 194 HELLNRNWFEMVVPEEIRDSVAQTFTFSCSENALSTPFECAINTKEKQNKLCSWKCTQLK 253

Query: 548 LPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
               +   Y L   DI+E KQ +  L +AK +AE  +  KS+F+A +SHE+RTPL AIIG
Sbjct: 254 DENGNTNGYILAGEDITERKQVEEALLNAKHMAEDANRTKSEFIANMSHELRTPLNAIIG 313

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
           FSE++  ++FG L N +  +Y N I  SG  +L+I+N +L+ISKIESG + ++++ +SL 
Sbjct: 314 FSEILIEKKFGDL-NDKQDKYLNNIFISGKKLLEIINSILEISKIESGNIEINYKTISLG 372

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725
           + + +    ++    ++  ++      NI  I+ D+  V++  L+++ NAI F+     +
Sbjct: 373 DLIEDLKEDIKEKLPDQAEMVSFEILTNIENIIVDINKVEKSVLHLIENAIKFSDKTQHV 432

Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
            +S        +  +V D G+G+T  ++++  KPF Q+  S      G G+GL + K + 
Sbjct: 433 EVSLESVDE-MIAFKVTDRGIGITEEDIKRLFKPFNQLDASSTRVYGGLGIGLYIIKKIA 491

Query: 786 DANMGKFYIFSTPAKG 801
           + + G   I S   KG
Sbjct: 492 ELHGGGLAIKSELEKG 507



 Score = 46.6 bits (109), Expect = 0.019,   Method: Composition-based stats.
 Identities = 23/246 (9%), Positives = 63/246 (25%), Gaps = 7/246 (2%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            ++I+  G    IS  +    G  A +++G           +       DL         
Sbjct: 45  IFSINEQGNFTYISPAIEDFTGYRAEEVMGTSFMQYIHPDDLPGLLQDIDLTLEGEHKPY 104

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI-VHVNRVDNDPRALGKRLDKKF 204
              +    G   YV      +    +N +  G  G  + +   +V        K   + +
Sbjct: 105 MFRVVSKTGNITYVHTSSRGIL---KNGKVVGINGIMVNIAQLKVIEFELMKQKEKAQHY 161

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL-- 262
             +  +       +     +  +       +    ++         +++  +        
Sbjct: 162 LDVAGVAIIVIDNDHRISLVNKKACGLLGYKEHELLNRNWFEMVVPEEIRDSVAQTFTFS 221

Query: 263 -TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
            +    S P +   +T              L++ +  +  Y+      +     +E    
Sbjct: 222 CSENALSTPFECAINTKEKQNKLCSWKCTQLKDENGNTNGYILAGEDITERKQVEEALLN 281

Query: 322 TPETVD 327
                +
Sbjct: 282 AKHMAE 287


>gi|294501111|ref|YP_003564811.1| two-component sensor histidine kinase ResE [Bacillus megaterium QM
           B1551]
 gi|294351048|gb|ADE71377.1| two-component sensor histidine kinase ResE [Bacillus megaterium QM
           B1551]
          Length = 590

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 90/365 (24%), Positives = 160/365 (43%), Gaps = 25/365 (6%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            +  E  QL SIL + +DG+   +R+G IL TN            +   +          
Sbjct: 249 ALNQEKEQLSSILSSMADGVITFSRDGSILITNPPAEHFLQTWYYE---QDVNNQQVPEL 305

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
           P+ + H    ++  +  ++ E    G T     + L   +            + D+SE +
Sbjct: 306 PANVVHLFQTVVETETERSAELKIQGKT----WVILMSPLYNQTKIRGAVAVLRDMSEER 361

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           +                  + DF+A VSHE+RTP++ + G+SE I +       +    E
Sbjct: 362 KL--------------DKSRKDFIANVSHELRTPISMLQGYSEAIIDDI--ASTDEEKKE 405

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
            A  I      +  +VN+LLD++++E+G + LH E V++ E     +   Q  A EK I 
Sbjct: 406 IAQVIYDESLRMGRLVNELLDLARMEAGHVQLHLESVAMVEFTERVLRKFQGLAKEKHIK 465

Query: 686 IRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744
           +  +    +    + D   ++Q+  N++ NAI  T   G++ +    + + E+ L V+DT
Sbjct: 466 LSLNGKIEDEFEAMIDSDRMEQVLTNLIDNAIRHTDDYGEVKLHLDKSQS-EIHLSVQDT 524

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G G+   +L    + F +   ++     GTGLGL +AK +V+A+ G   + S   +GT  
Sbjct: 525 GAGIPKEDLPFVFERFYKADKARTRGKSGTGLGLAIAKNIVEAHQGIIAVESELNEGTTF 584

Query: 805 EIIFP 809
            I  P
Sbjct: 585 FIKLP 589


>gi|126731549|ref|ZP_01747355.1| sensory box histidine kinase/response regulator [Sagittula stellata
           E-37]
 gi|126708085|gb|EBA07145.1| sensory box histidine kinase/response regulator [Sagittula stellata
           E-37]
          Length = 886

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 112/581 (19%), Positives = 214/581 (36%), Gaps = 31/581 (5%)

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
           +  L      +   L       +         +     +               +  +  
Sbjct: 32  IVVLGLEVPRQLARLDESAAENVQWTIGQAETEVIALELAAAHAISDPDDPAGLDEVRLR 91

Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDD 359
           F+    R      A   E      E  ++                +     ++   S DD
Sbjct: 92  FDIAYSRIETLQRAKVLEELRSGDEVDNELTAAV-----------DFRDKWVSVIDSPDD 140

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
           +  A     L       D        L R   + IA  AR+  ++     +   +     
Sbjct: 141 VLRAALPDLL-------DAAQEVRTDLRRLALSGIAFFARVGDMRREEIINTLFSIGLMT 193

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
            A      +  + +           +       ++ +I+  + D +  ++RE  I+  N 
Sbjct: 194 IALVGILLILISAVLRLARQREGEAQANFETRRRMETIISTSLDAVVAVSRENRIIEWNG 253

Query: 480 AVSKLFGYPVEDILRKPFTVFL-EQNTPSVMNHYLTEILSLDLRQTLEK---ITLGSTKE 535
           A  ++FGY   + +       +   +   +    ++  L+    + + +         K+
Sbjct: 254 AAERVFGYTRAEAIGTDMPTLIVPPHFREMHRSGMSRYLNDGEPRVIGRGIVQLEAMRKD 313

Query: 536 EKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
             +  + + + K    +   +   + DIS+  +    L  A+  A      K++ LA +S
Sbjct: 314 GTVFPVDLSLAKANSPTGEIFVAFLRDISDRVRSDEALRRARDRAVAGEKQKAELLAVMS 373

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HE+RTPL  I+G  E+++              Y   I +S  ++L  VN++LDIS++++G
Sbjct: 374 HEMRTPLNGILGTLELLEADSLPAED----QRYLRIIRQSSEILLGHVNEVLDISRLDAG 429

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILADLRSVKQIALNIL 712
           KM L      L   + E +      A  +  L+        +  + +D   ++QI LN++
Sbjct: 430 KMTLRKTRFDLVALLEEIVESQADRARAQGNLLTLRPPNPALHEVYSDPDRLRQILLNLV 489

Query: 713 SNAIHFTPSGGQIIISTTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           SNAI FT +GG+I+I     S  ++  LRV DTGVG+   +L +    F  I +S   R 
Sbjct: 490 SNAIKFT-AGGRIMIEADCDSGMDDCELRVIDTGVGIKPDDLARIFDDFVTIDSSYGRRN 548

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
            GTGLGL +++ +  A  G+    S P  G++  +  PL  
Sbjct: 549 TGTGLGLSISQRLATALGGELGAESEPGDGSVFWLRLPLAP 589



 Score = 48.1 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 23/264 (8%), Positives = 59/264 (22%), Gaps = 15/264 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNTW--- 143
           +     + E +    +  G    + IG  +  +    H    +   +   L         
Sbjct: 242 VSRENRIIEWNGAAERVFGYTRAEAIGTDMPTLIVPPHFREMHRSGMSRYLNDGEPRVIG 301

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
            G   L  +       P+DL+     S   E         +             +R   +
Sbjct: 302 RGIVQLEAMRKDGTVFPVDLSLAKANSPTGEI----FVAFLRDISDRVRSDEALRRARDR 357

Query: 204 FSHLHEIKKGHSSVEKEKYD-----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
                + K    +V   +       I           +  +            ++L    
Sbjct: 358 AVAGEKQKAELLAVMSHEMRTPLNGILGTLELLEADSLPAEDQRYLRIIRQSSEILLGHV 417

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
             +L        +     T        ++   +  + ++     L+ R            
Sbjct: 418 NEVLDISRLDAGKMTLRKTRFDLVALLEEIVESQADRARAQGNLLTLRPPNPALHEVYSD 477

Query: 319 ENLTPETVDKC-PIPFFVYSHGNL 341
            +   + +           + G +
Sbjct: 478 PDRLRQILLNLVSNAIKFTAGGRI 501


>gi|209522754|ref|ZP_03271312.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
 gi|209496803|gb|EDZ97100.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
          Length = 1769

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 120/778 (15%), Positives = 271/778 (34%), Gaps = 92/778 (11%)

Query: 118  LCDVSDILHIDPN-NHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFS 176
                          + +   +  +  +  +  +   +G+     I  + L +     +  
Sbjct: 835  WSHGVHPDDRQAAADLLQKAILGEADYNTEFRVLHPDGSL--HYIKASGLVVRDEAGQPI 892

Query: 177  GFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ----SPPP 232
               G  +           A  +  + +F  + +             DI            
Sbjct: 893  SMIGVNL--DITDIRQAEAALQASETRFRRVFDSNVVGMMFTNFAGDIIEANDRFLEMLG 950

Query: 233  HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL--PEQEDFHTINLNQYTKKQYFG 290
            + R +  +  +        +  + +   +    +S    P ++ +   + +         
Sbjct: 951  YSRAQRPMGLINWAEITPPEYRELDLQAIEHLRQSGFIHPFEKAYRHQDGHLVFVLIGVA 1010

Query: 291  TLQNNSKESFEYL--------SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNL- 341
             L          +        + +          E +      +       + +      
Sbjct: 1011 MLSQTDGSCVCVVVNISAQKAALQERTKAEQALQESKLRLELGLASANTGLWDWKMQTGE 1070

Query: 342  FYANPSFLLLTKYKSVD------DIEIAGGLSTLLDAPKLSDNNAIK-------PVMLYR 388
             + N  +  +  Y+  +      + +       L    +  + +             L  
Sbjct: 1071 LWFNKQWKSMLGYQEHEIENRLTEWQSRVHPDDLAQVYQDVERHIQGKTELYRNEHRLRC 1130

Query: 389  SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
             D +     A+   ++ + E  L          +   +       + +         +  
Sbjct: 1131 KDGSYRWILAQGRMVERDAEGRLLRFIGTHTDISDRKKAEQTIEQQAQRERLLRETNQRI 1190

Query: 449  IEVMQLCSI-----------LEATSDGIAII--NR---EGIILS---TNRAVSKLFGYPV 489
             + + L +I           L+ +  GI     +    +G  ++    N     +   PV
Sbjct: 1191 SQSLDLPTIFDTASREICNCLQGSRVGIFKFYPDSGYDDGEFVAESVVND-FPSVLAIPV 1249

Query: 490  EDIL-RKPFTVFLEQNTPSVMNHYLT--------------EILSLDLRQTLEKITLG--- 531
             D    + +     Q    V +                  ++ +  +   + +  L    
Sbjct: 1250 HDHCFGENYASLYAQGRYYVADDIHHDGLENCHVDILSQFQVRANLVIPIICQDVLWGLL 1309

Query: 532  --------STKEEKLLSL-----RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578
                       E+  + L       +   +  S+ +     ++ E +Q + +L+   +  
Sbjct: 1310 CIHQCDGPRHWEQSDIDLAQQFSFQLAIAIQQSNLFEQLQQELRERQQAQQQLTQRNQEL 1369

Query: 579  EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
             + +  K +FLA +SHE+RTPL AI+G +E +  + FGP+ N R ++    ++RS + +L
Sbjct: 1370 IRATRLKDEFLANMSHELRTPLNAILGMTEGLHEEVFGPV-NDRQLKALQTVERSASHLL 1428

Query: 639  DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
             ++ND+LD++KIESG++ L   P ++      +I+ ++  A +KRI +  +   N+P I+
Sbjct: 1429 ALINDILDVAKIESGQVELECSPTAIAPLCKSSIAFIKQQALKKRIQLSVNLPLNLPDII 1488

Query: 699  ADLRSVKQIALNILSNAIHFTPSGGQIIIST-------THTSNEEVILRVRDTGVGMTNY 751
             D R ++Q+ +N+L+NA+ FTP GG I +             +  +   VRDTG+G++  
Sbjct: 1489 LDERRIRQVLINLLNNAVKFTPEGGSITLEVILPPPREAEGESPYLRFSVRDTGIGISPE 1548

Query: 752  ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             ++K  +PF QI ++   + +GTGLGL L K +V+ + G+  + S    G+   I  P
Sbjct: 1549 NIKKLFQPFMQIDSALNRQYQGTGLGLALTKQIVELHGGRVGLTSEVGVGSCFSIDLP 1606



 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 49/517 (9%), Positives = 139/517 (26%), Gaps = 23/517 (4%)

Query: 91   AHGYLKEISEELPKTIGNYAFKMIGMRL-------CDVSDILHIDP-NNHIGDLLKRQNT 142
              GYL E +       G       G+ L         +     +D   +    +++ +  
Sbjct: 549  PEGYLIEANRAAEDLFGYSRDDFSGLSLERSPLHISQLHPPEELDRIFSSFERIIEEKQL 608

Query: 143  WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
            W   T +   +G+   +P+D++   I             GI              +  + 
Sbjct: 609  WVLDTRILKADGS--EIPVDISGSLIKVGQTHIV----QGIFRDIGDRAAFEEKLRSSET 662

Query: 203  KFSHLHEIKKGHSSVEKEKYD--IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
            +   + E       +                       ++   T     +D+     + P
Sbjct: 663  ELRSVFEAMGDLVLIIAPDARKVNVMPTRHQILEPQATEILDQTLDCLFQDEAESRTRLP 722

Query: 261  LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
            +L +  +      ++     ++    +   +  ++ +  +            A   +   
Sbjct: 723  ILEALTTGKTVSFEYQIDLEDRRIYFEASISPMSDRRVIWVARDMTKRKQAEAEIFQLSQ 782

Query: 321  LTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD-APKLSDN 378
                 +    I F+ +    N    +     L    +         +      +  +  +
Sbjct: 783  RLKIALSSGNIGFWDWDLRQNQITWDEQMYALYGVDNSSYFSSPESVVAYEVWSHGVHPD 842

Query: 379  NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
            +      L +      A       +     +   +        ++  + +   G+  +  
Sbjct: 843  DRQAAADLLQKAILGEADYNTEFRVLHPDGSLHYIKASGLVVRDEAGQPISMIGVNLDIT 902

Query: 439  DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK--P 496
            D R  +  ++    +   + ++   G+   N  G I+  N    ++ GY           
Sbjct: 903  DIRQAEAALQASETRFRRVFDSNVVGMMFTNFAGDIIEANDRFLEMLGYSRAQRPMGLIN 962

Query: 497  FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556
            +          +    +  +         EK      ++  L+ + I +  L  +    +
Sbjct: 963  WAEITPPEYRELDLQAIEHLRQSGFIHPFEK--AYRHQDGHLVFVLIGVAMLSQTDGSCV 1020

Query: 557  -TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
              + +IS  K    + + A++  ++        LA  
Sbjct: 1021 CVVVNISAQKAALQERTKAEQALQESKLRLELGLASA 1057



 Score =  105 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 45/531 (8%), Positives = 139/531 (26%), Gaps = 48/531 (9%)

Query: 91   AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNTWYGKTT 148
                   +     + +   A +++   L D       +      I + L    T   +  
Sbjct: 680  PDARKVNVMPTRHQILEPQATEILDQTL-DCLFQDEAESRTRLPILEALTTGKTVSFE-- 736

Query: 149  LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
             + I+  +  +  + +  P+  R       R   +           A   +L ++     
Sbjct: 737  -YQIDLEDRRIYFEASISPMSDR-------RVIWVARDMTKRKQAEAEIFQLSQRLKIAL 788

Query: 209  EI---------KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE---YYAHKDDVLKT 256
                        + +     E+           +      V +           D     
Sbjct: 789  SSGNIGFWDWDLRQNQITWDEQMYALYGVDNSSYFSSPESVVAYEVWSHGVHPDDRQAAA 848

Query: 257  EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS----LS 312
            +        E+    +      + + +  K     +++ + +    +      +      
Sbjct: 849  DLLQKAILGEADYNTEFRVLHPDGSLHYIKASGLVVRDEAGQPISMIGVNLDITDIRQAE 908

Query: 313  AYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
            A     E       D   +     +  G++  AN  FL +  Y         G ++    
Sbjct: 909  AALQASETRFRRVFDSNVVGMMFTNFAGDIIEANDRFLEMLGYSRAQ--RPMGLINWAEI 966

Query: 372  APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP---FEKANQFPENM 428
             P       ++ +   R                 +      +  +        +     +
Sbjct: 967  TPPEYRELDLQAIEHLRQSGFIHPFEKAYR--HQDGHLVFVLIGVAMLSQTDGSCVCVVV 1024

Query: 429  PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
              +  +    +    ++ ++   ++L   L + + G+     +   L  N+    + GY 
Sbjct: 1025 NISAQKAALQERTKAEQALQESKLRLELGLASANTGLWDWKMQTGELWFNKQWKSMLGYQ 1084

Query: 489  VEDILRK--PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
              +I  +   +   +  +  + +   +   +     +          K+     +    +
Sbjct: 1085 EHEIENRLTEWQSRVHPDDLAQVYQDVERHI-QGKTELYRNEHRLRCKDGSYRWILAQGR 1143

Query: 547  KLPFSS-----CYSLTMHDISEWKQEK---NKLSHAKKIAEKESSHKSDFL 589
             +   +      +  T  DIS+ K+ +    + +  +++  + +   S  L
Sbjct: 1144 MVERDAEGRLLRFIGTHTDISDRKKAEQTIEQQAQRERLLRETNQRISQSL 1194



 Score = 90.9 bits (224), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 35/273 (12%), Positives = 85/273 (31%), Gaps = 16/273 (5%)

Query: 336 YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIA 395
           Y  G +      +         + +      + L+  P + D+     ++    D+    
Sbjct: 408 YRQGRVRVVRDIYDDSMTLCHQELLLSFDIRAKLMV-PLVVDDRLWGLMIASHRDQPRDW 466

Query: 396 ASAR---LHTIQWNRENSLAMTFIPFE---KANQFPENMPQNGIEPEDVDTRINKR--KM 447
            +     L  +      +L       +   +  Q  +          ++++R+ +R  ++
Sbjct: 467 QTGEIELLQALSIQLAIALKQATQHEQLQNEIRQRQKAQLALASLNSELESRVEQRTAEL 526

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR-------KPFTVF 500
           +    +   ++E  SD I +   EG ++  NRA   LFGY  +D             +  
Sbjct: 527 QAREARYRGLMEGASDAIFLATPEGYLIEANRAAEDLFGYSRDDFSGLSLERSPLHISQL 586

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
                   +      I+       L+   L +   E  + +   + K+  +        D
Sbjct: 587 HPPEELDRIFSSFERIIEEKQLWVLDTRILKADGSEIPVDISGSLIKVGQTHIVQGIFRD 646

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
           I +    + KL  ++           D +  ++
Sbjct: 647 IGDRAAFEEKLRSSETELRSVFEAMGDLVLIIA 679


>gi|75812816|ref|YP_320433.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
 gi|75705572|gb|ABA25244.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
          Length = 720

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 100/451 (22%), Positives = 182/451 (40%), Gaps = 14/451 (3%)

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
           L           + P+ +       +   +   T +++ E+   M+ +    A+      
Sbjct: 131 LHHPLFPIVEGLLIPLYINNQPLGTLWIVSHQETRRFDGEDHRLMSRLAGFSASALQSLN 190

Query: 429 PQ-NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII-----NREGIILSTNRAVS 482
                 E      +  + K+     Q  +++     GI        +        +    
Sbjct: 191 YWHQKAENAVRQEQAIRAKLNYTQAQFEALVANVP-GIVYRYSPCPDHPYRFTFFSSGCY 249

Query: 483 KLFGYPVEDIL--RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
           +L     + I+     F   +           +T  +   L    E   +  + + K + 
Sbjct: 250 ELLELEAQTIVQDGNAFVQLIHPEDVDSFKSSVTHAVENFLPWRWEGRIITPSGKLKWIV 309

Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
                      + +   + DI+  K  + +L  +++ A+  +  K +FLA +SHE+R+PL
Sbjct: 310 GSSRAVPTTEGNAWDGILIDITNHKLAEAELRQSREEAQAANRVKDEFLAVLSHELRSPL 369

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
             I+G+S ++  ++   L   +  E    I R+  L  +++ DLLD+S+I  GK+NL+  
Sbjct: 370 NPILGWSSLLLKRK---LSEAKIEEGLATIHRNAQLQSELIEDLLDVSRILRGKLNLNCS 426

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720
           PV L   +  A+  VQL A  K I ++ +   NI ++  D   ++Q+  N+LSNA+ FTP
Sbjct: 427 PVDLTATIMGAMETVQLAAQAKSITLQAALEPNIGQVRGDATRLQQVIWNLLSNAVKFTP 486

Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
            GGQ+ I         V + V DTG G+    L      F Q   S   +  G GLGL +
Sbjct: 487 PGGQVNIHLE-QLGNVVQITVSDTGKGIAPDFLAYIFDYFRQEDGSITRKFGGLGLGLAI 545

Query: 781 AKAMVDANMGKFYIFS-TPAKGTLIEIIFPL 810
           A+ +V+ + G     S    +G    I  PL
Sbjct: 546 ARHLVELHSGTIEAQSPGVDQGATFIIRLPL 576


>gi|117925933|ref|YP_866550.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117609689|gb|ABK45144.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 997

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 100/498 (20%), Positives = 205/498 (41%), Gaps = 18/498 (3%)

Query: 335 VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL-----LDAPKLSDNNAIKPVMLYRS 389
           +         N  F       + DD       +       L    +        +++   
Sbjct: 229 ILRLDEQHQGNIRFTADVVLFTTDDYFQTAMANKRQDFLMLGLAWIGIAILSAWLLVTWL 288

Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV---DTRINKRK 446
           +R     +  L  +  +  +   +     ++  Q  E         E       + + R+
Sbjct: 289 NRRLNEVARELRGLNLSGASFGRLKVQGEDEVRQVAEAFNAVLERLESAYGELAKKSARQ 348

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
           M++E  +   +++   + + I + +G ++  N A  KL GY    +L       L  N+ 
Sbjct: 349 MQLEREKYRGVVDQAGESLLIFDLDGRVVEANSAAEKLLGYRRVTLLNYTQDQLLAPNST 408

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQ 566
             + ++  +        T E     +  ++  + +     ++ +         DI++ K+
Sbjct: 409 LTIPNHDGDNAENPSHVTFETRLHTADGQDLEVEVWAGFLEIDYVQHTLWLARDITDRKR 468

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
            + ++  A+ +AEK    KS FLA +SHEIRTP+ AI+G +E++         +     Y
Sbjct: 469 LEAEMVAARDMAEKAYQAKSIFLATMSHEIRTPMNAILGTAELLAETEL----DADQSRY 524

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
                 +G  +L ++ND+LDISK E+G + L     S+ E + +   L+     EK + +
Sbjct: 525 VRMFTSAGENLLQVINDILDISKFEAGHIELEQRVFSVREMMGDLHKLLAYKCKEKGLYL 584

Query: 687 RTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EVILRVR 742
             + +   P  ++ D   ++Q+ +N+L NAI FT +G   +++ +    +   ++   V 
Sbjct: 585 LVNASETTPDSLIGDPTRLRQVLINLLGNAIKFTDTGTVALLAHSEQIADKQVQLAFHVV 644

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG+G+++ + EK  +PF Q          GTGLGL + ++++    GK  + S    G+
Sbjct: 645 DTGIGISDADQEKVFRPFEQAGTYITRTHGGTGLGLSICQSLIHKMGGKITVHSRADHGS 704

Query: 803 LIE--IIFPLYDTSHPHD 818
                +   L + S   +
Sbjct: 705 TFTAQVNLDLAEESTAQN 722



 Score = 38.5 bits (88), Expect = 4.9,   Method: Composition-based stats.
 Identities = 18/162 (11%), Positives = 39/162 (24%), Gaps = 7/162 (4%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI-LHIDPNNHIGDLLKRQNTWYGKTT 148
           D  G + E +    K +G     ++      +      +   NH GD  +  +    +T 
Sbjct: 371 DLDGRVVEANSAAEKLLGYRRVTLLNYTQDQLLAPNSTLTIPNHDGDNAENPSHVTFETR 430

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           L   +G +L V +    L I              +           A            +
Sbjct: 431 LHTADGQDLEVEVWAGFLEIDYVQHTLW------LARDITDRKRLEAEMVAARDMAEKAY 484

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK 250
           + K    +    +              +        +    +
Sbjct: 485 QAKSIFLATMSHEIRTPMNAILGTAELLAETELDADQSRYVR 526


>gi|332704289|ref|ZP_08424377.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332554438|gb|EGJ51482.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 614

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 89/423 (21%), Positives = 170/423 (40%), Gaps = 29/423 (6%)

Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT--RINKRKMEIEVMQL 454
             R    +    +       P    ++  +   Q     + ++    +N  K+  E  + 
Sbjct: 214 RMREAAKRIADGDYDVQV--PVSGQDELAQLAGQFNSMAKRLEQYHAMNIGKILAEKHKT 271

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
            +IL++  DGI +++ E  I+S N     +F    E++  K     +     S +     
Sbjct: 272 EAILQSVDDGIVVVDPEFSIMSINLMAGSIFNVSPEEVSGKHVLEAIRDERLSKLIK--Q 329

Query: 515 EILSLDLRQTLEKITLGSTKEEK---LLSLRIIIKKLPFSSCYSLTM--HDISEWKQEKN 569
            I +    +  E+ +  S    +     S  ++   +      +  +   D++  +    
Sbjct: 330 AIETGRQPELDEQESTLSVSRGEKQVYYSFSVVPVHIGHGPVIAAVLLLRDVTRLR---- 385

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
                     +    KS+F+   SHE+RTPLT+I G S  +   + G   + R  +    
Sbjct: 386 ----------ELDRLKSEFVMTASHELRTPLTSI-GMSIDLLKDKAGSKLSDRERQLLTV 434

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
                  +  +VN+LLD+SKIE+GK+ + FE V L     +   ++   A +  + +  S
Sbjct: 435 AQEDVQRLKALVNELLDLSKIEAGKLEIDFERVPLPLICEKTAKIMATQAEQAGVELAFS 494

Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749
               +P +  D   +  + +N++ NA+  TP  G + +     +     + V D G G+ 
Sbjct: 495 CDEGLPEVRVDPNKITWVLVNLVGNALRHTPENGHVRV-AAKQAGRFAHVSVSDDGEGIP 553

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
                K    F Q+ +  +    GTGLGL + K +V A+ G  ++ STP KGT      P
Sbjct: 554 LEFQTKIFDKFVQVKS--RRTSSGTGLGLAICKEIVRAHGGTIWVESTPGKGTTFTFTVP 611

Query: 810 LYD 812
           + +
Sbjct: 612 IAE 614


>gi|218898190|ref|YP_002446601.1| sporulation kinase [Bacillus cereus G9842]
 gi|218540722|gb|ACK93116.1| sporulation kinase [Bacillus cereus G9842]
          Length = 801

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 102/532 (19%), Positives = 210/532 (39%), Gaps = 47/532 (8%)

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVD-----KCPIPFFVYSHGNLFYANPSFLLL 351
            +  E +      +     +   + T E ++                G++  AN ++  +
Sbjct: 294 GQVIEVVGSTVDITERKKVESELSATKELLESFIKHNLDAITISDREGHILQANKAYEKI 353

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ-WNRENS 410
             + S + I            P + D    + +   +   T  +   RL T++  +  + 
Sbjct: 354 FGWSSQEIIGKRL--------PCVPDFLMEESLENIQKILTGESVVTRLETVRQRSDGSL 405

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK-------MEIEVMQLCSILEATSD 463
           L ++       +     +  + I  +  + +  +R+       +    M+  +++E  +D
Sbjct: 406 LDVSLTVSPILDVRGNVIALSAICRDISERKQAERERHRLHRQLRDSEMKYRALIEQATD 465

Query: 464 GIAI--INREG---IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
            + +  +N +      +  N    + FGY  E++L   F+  + Q++  ++   L +I  
Sbjct: 466 AVYVVELNEDNAPSRFIEVNPVGCRRFGYSREELLSLSFSNIVPQDSQMIVR-LLEKIKK 524

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578
                TL+   +  T +       + +  L     +     DI+E  + +  L  ++K+A
Sbjct: 525 GQTSFTLQDEYVFPTGKVITAEFSVRVFNLNGKKVFLSISRDITERLKTEELLRKSEKLA 584

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
                        ++HEI  PLTA+ GF +++K+       N     Y N +      + 
Sbjct: 585 VV-----GQLATAMAHEINNPLTAMKGFMQLLKSTE-----NENNQGYINIVSSEIERIE 634

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
            I  + + ++K +  K+  +     +   + + + L+Q  A    I  R      IP I 
Sbjct: 635 SITTEFMAVAKPQVVKIQPN----DISVLMDQVLMLLQPQAMMHNIKFRIDLNPGIPLIS 690

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
            +   +KQ+ +NIL NAI   P GG+I+I      N +V +R  D G G+    +    +
Sbjct: 691 CEGNQLKQVFVNILKNAIESMPMGGEILIQINILDNNQVRIRFIDQGCGIPKERIPYLGE 750

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           PF        I+ EG GLGL +   +++ + GK +I S   KGT +E+  P+
Sbjct: 751 PFY------SIKEEGVGLGLMICYKIIETHQGKVFIESEVNKGTTVEVTLPI 796



 Score =  111 bits (278), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 45/286 (15%), Positives = 91/286 (31%), Gaps = 21/286 (7%)

Query: 313 AYFDEGENLTPETVDKCPIPFF----VYSHGNLFYANPSFLLLTKYKSVDDIEI-AGGLS 367
               + E    +TV +     F    V  H      +  F     + S   +      + 
Sbjct: 186 RELKKSEQELADTVHELQGGIFKFKKVDKHFIHTLCDGQFYYQNGFYSEQVVGKSLRTID 245

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
             +  P L          L   +   I        + W  + ++ +         +  + 
Sbjct: 246 ASIVPPHLVPQLMKY--YLQAWEGKEIIFE-----LPWPNDKTIILI--ALRPIKRNGQV 296

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
           +   G   +  + +  + ++      L S ++   D I I +REG IL  N+A  K+FG+
Sbjct: 297 IEVVGSTVDITERKKVESELSATKELLESFIKHNLDAITISDREGHILQANKAYEKIFGW 356

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
             ++I+ K     +           + +IL           T+    +  LL + + +  
Sbjct: 357 SSQEIIGKRL-PCVPDFLMEESLENIQKIL-TGESVVTRLETVRQRSDGSLLDVSLTVSP 414

Query: 548 LPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
           +               DISE KQ + +     +   ++S  K   L
Sbjct: 415 ILDVRGNVIALSAICRDISERKQAERERHRLHRQL-RDSEMKYRAL 459



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 39/287 (13%), Positives = 84/287 (29%), Gaps = 25/287 (8%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG-KTT 148
           D  G++ + ++   K  G  + ++IG RL  V D L  +   +I  +L  ++     +T 
Sbjct: 338 DREGHILQANKAYEKIFGWSSQEIIGKRLPCVPDFLMEESLENIQKILTGESVVTRLETV 397

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +G+ L V + ++  PI              I               RL ++     
Sbjct: 398 RQRSDGSLLDVSLTVS--PILDVRGNVIALS--AICRDISERKQAERERHRLHRQLRDSE 453

Query: 209 EIKKGHSSVEKEKYDIFSQQS-----------PPPHLR---MKNKVSSLTEY-YAHKDDV 253
              +       +   +                P    R    + ++ SL+      +D  
Sbjct: 454 MKYRALIEQATDAVYVVELNEDNAPSRFIEVNPVGCRRFGYSREELLSLSFSNIVPQDSQ 513

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
           +       +   ++S   Q+++        T +               +LS     +   
Sbjct: 514 MIVRLLEKIKKGQTSFTLQDEYVFPTGKVITAEFSVRVFN--LNGKKVFLSISRDITERL 571

Query: 314 YFDEGENLTP--ETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVD 358
             +E    +     V +       +   N   A   F+ L K    +
Sbjct: 572 KTEELLRKSEKLAVVGQLATA-MAHEINNPLTAMKGFMQLLKSTENE 617


>gi|239617944|ref|YP_002941266.1| PAS/PAC sensor signal transduction histidine kinase [Kosmotoga
           olearia TBF 19.5.1]
 gi|239506775|gb|ACR80262.1| PAS/PAC sensor signal transduction histidine kinase [Kosmotoga
           olearia TBF 19.5.1]
          Length = 417

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 81/385 (21%), Positives = 160/385 (41%), Gaps = 29/385 (7%)

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
            N +     D     +++  ++  + ++L+   D + I + EG +   N++  +L     
Sbjct: 53  YNAVRTLIRDKTEEIKRVSEKLKYMENVLDNLGDALFITDAEGRVEFINKSAKEL--VKS 110

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
           +D+L K     +       +   L + +     Q           + +    + I     
Sbjct: 111 QDLLGKKMNEII---DNYYIVDLLEDAVKSGSVQQTNLTIF--HPKRRFYECKAIPVSYG 165

Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                 L + DI+  +  +                + +F++ VSHE+RTPLT+I G++E 
Sbjct: 166 EKIHCLLILRDITMERNLE--------------LMRREFVSNVSHELRTPLTSIHGYAET 211

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           +              ++   I+     +  ++NDLLD+ K+E+G + L  E V L E   
Sbjct: 212 LLEYDLS--DEETVRKFLRIIEGESARMTRLINDLLDLEKLEAGDIQLVLEDVELSEVGE 269

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT--PSGG--QI 725
             I +V   A E  + I       +  +  D   + Q+ LN++ NA+ +T     G  ++
Sbjct: 270 YVIKIVSPLAEELGVSIYEDMERGV-FVEGDFDRLVQLTLNLVDNAVKYTSVKEHGPKEV 328

Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
            I   +T+N   +L V DTG+G+     +   + F ++  ++  +  GTGLGL + K + 
Sbjct: 329 WIRV-YTANNYAVLEVEDTGIGIPEEARKHIFERFYRVDKARSRKMGGTGLGLAIVKLIA 387

Query: 786 DANMGKFYIFSTPAKGTLIEIIFPL 810
           + + G   + S    GT  ++  PL
Sbjct: 388 EKHGGTVSLDSEFGNGTTFKVRLPL 412


>gi|91774051|ref|YP_566743.1| multisensor signal transduction histidine kinase [Methanococcoides
           burtonii DSM 6242]
 gi|91713066|gb|ABE52993.1| bvgS precursor-like multisensor signal transduction histidine
           kinase [Methanococcoides burtonii DSM 6242]
          Length = 682

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 97/371 (26%), Positives = 180/371 (48%), Gaps = 5/371 (1%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +    ++     +   ++E ++DGI I+ +  +I+  N   +++ GY  + +++      
Sbjct: 299 QKRADEINQAEEKYSVLVEESNDGIIIV-QNYLIVFANLKFAEMLGYEKDRLIKTLLNNC 357

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI--IIKKLPFSSCYSLTM 558
           +     + +     +++        +  T   +   + + + I   +     +      M
Sbjct: 358 INNALKNEVITRYEQLIQGRSETEQQYETNFFSHNGENIPVEINSSLIHYRGNRAVMYIM 417

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            DI++ KQ++  L ++++ AE  +  K+ FLA +SH++RTPL AIIG+S+++  +  G L
Sbjct: 418 RDITKRKQQEQDLLNSRQSAEVANHSKNTFLASMSHDLRTPLNAIIGYSDLLLTESVGDL 477

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
            N + I+Y N I  SG L+L+I+ND+L+ISKIE+GKM L      + E + E   LV+  
Sbjct: 478 -NEKQIKYTNNILISGRLLLNIINDILNISKIEAGKMQLRPSENDIQEILKEVNELVKTK 536

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738
               +  +  +  N I +I AD   +  I  N++ NAI  +P   +I I+ T      + 
Sbjct: 537 VQISKNELIFNIENGIEKIYADRIKIISILQNLVDNAIKHSPKNEKIFINITTKDKN-LQ 595

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           + V++ G G+T    ++   PF Q+         GTGLGL + K  V  + GK +I S  
Sbjct: 596 ICVKNKGKGITQEMQKEIFTPFVQVEKFISKEYRGTGLGLAIVKHYVHLHNGKIWIESVL 655

Query: 799 AKGTLIEIIFP 809
            + T      P
Sbjct: 656 GEETSFIFTIP 666


>gi|73748089|ref|YP_307328.1| sensor histidine kinase [Dehalococcoides sp. CBDB1]
 gi|73659805|emb|CAI82412.1| sensor histidine kinase [Dehalococcoides sp. CBDB1]
          Length = 581

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 97/464 (20%), Positives = 187/464 (40%), Gaps = 29/464 (6%)

Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
            +        +       +   +    +    A   + ++ +              +   
Sbjct: 147 AVARVALPVEEVYAAVREVDRTILLGAVISILAAGLLAVWVAASVTRPVKELTAISRRIA 206

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
           +  +    I      +  E      +  E +   I  + +  E   L ++LE   DGI +
Sbjct: 207 QGQMDTIQIDVSGKGEMEELAKAFRLMTERLRDSI--KAVSSERDHLSAVLERMGDGIFL 264

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
           ++REG I   N A  ++F      ++   F   +  +  + +        S   ++    
Sbjct: 265 LDREGSINLLNHASERIFKLEAGGVIGHSFVEAIRDHEINAV---FERAKSSGKQEMGFV 321

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
                    K   L II   L   S Y + + D+SE ++ +                + D
Sbjct: 322 ELTA----GKRF-LGIIATPLVSQSGYLVLVQDLSELRRLE--------------KVRRD 362

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           F+A +SHE+RTP+T++   +E ++              + + I    + +  +V +L D+
Sbjct: 363 FVANISHELRTPITSLKLLTETLQEG--AASDPDVAAGFIDKIHLEVDKLAQLVTELSDL 420

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707
           S IESG+  L+ +P  +  A+  A   +   A    I++       +PR+  D   V+Q+
Sbjct: 421 SAIESGQAVLNLQPGDIRTAIKLAAERLSPQAERAGIILGVELPETLPRVRLDENRVEQV 480

Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
            +N++ NAI FTP GG+I I    T ++ +++ V D+G+G+   +L +  + F ++  S+
Sbjct: 481 LVNLVHNAIKFTPKGGKIKIGVR-TQSQTLVVYVTDSGIGIPEDDLTRVFERFYKVDKSR 539

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
              G GTGLGL ++K +V A+ G  +  S   KG       PL 
Sbjct: 540 S--GGGTGLGLAISKHIVQAHGGSIWAESVYGKGATFSFSLPLA 581



 Score = 43.9 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 30/244 (12%), Positives = 63/244 (25%), Gaps = 17/244 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + +D  G +  ++    +     A  +IG    +         ++ I  + +R  +  G
Sbjct: 262 IFLLDREGSINLLNHASERIFKLEAGGVIGHSFVEAI------RDHEINAVFERAKS-SG 314

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           K  +  +E T     + + A P+ S++          +V           + +      S
Sbjct: 315 KQEMGFVELTAGKRFLGIIATPLVSQSGYLV------LVQDLSELRRLEKVRRDFVANIS 368

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
           H          +  E     +   P       +K+    +  A     L TE   L   E
Sbjct: 369 HELRTPITSLKLLTETLQEGAASDPDVAAGFIDKIHLEVDKLAQ----LVTELSDLSAIE 424

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
                       I        +        +            P +    +  E +    
Sbjct: 425 SGQAVLNLQPGDIRTAIKLAAERLSPQAERAGIILGVELPETLPRVRLDENRVEQVLVNL 484

Query: 326 VDKC 329
           V   
Sbjct: 485 VHNA 488


>gi|317484596|ref|ZP_07943500.1| hsp90-like protein [Bilophila wadsworthia 3_1_6]
 gi|316924136|gb|EFV45318.1| hsp90-like protein [Bilophila wadsworthia 3_1_6]
          Length = 670

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 99/403 (24%), Positives = 170/403 (42%), Gaps = 15/403 (3%)

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS-TNRAVSKLFG 486
           +   G   +  +    + ++   + +  +       G+    R   IL   N    + FG
Sbjct: 122 LRLKGYHQDVSELESMRERLRENLSRFETACRIGRIGVFECTRGSRILFSANDIFFEQFG 181

Query: 487 YPVEDILR---KPFTVFLEQNTPSVMNHYLTEIL-SLDLRQTLEKITLGSTKEEKLLSLR 542
            P + +     +     +       +   L          +  E   L   K  +     
Sbjct: 182 IPADMVCFSAFRGLWSRIAPGCRKRVLEALRRSSWKPGRCERFEIELLDPEKGSRWFDFE 241

Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
               +   +      + DI+E KQ +  L  A + AE  +  KS FLA +SHE+RTP+ A
Sbjct: 242 SEFSRDGDAVRAVGYVADITEHKQHEASLRMAAEAAEAANRAKSSFLANMSHELRTPMNA 301

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           IIG S +            +  EY + I  S   +L I+ND+LD++K+E+ K+ L   P 
Sbjct: 302 IIGLSYLALKTDLTT----QQYEYISRISESSTALLGILNDILDLTKVEANKLELARTPF 357

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPS 721
           +L + +    ++V   A  K +      A ++P + + D   V+Q+ LN+ +NA+ FT  
Sbjct: 358 NLKKELGILAAVVLPEAEGKGLEFSLEIAPDVPLLLMGDALRVRQVLLNLCNNAVKFTDE 417

Query: 722 GGQ-IIISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
           G   + +    ++N  V L   VRD G+G+   E+ +   PF Q+  S   R  GTGLGL
Sbjct: 418 GSVSLRVRVVDSTNTRVRLEFVVRDCGIGIPESEIGRIFSPFMQVDESATRRFGGTGLGL 477

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIF--PLYDTSHPHDC 819
            ++K +V+   G   + S   KG+   +    PL +   P D 
Sbjct: 478 AISKRLVELMGGTLTVGSRVNKGSTFRVELAFPLAEDVPPGDA 520


>gi|312961453|ref|ZP_07775956.1| two-component hybrid sensor and regulator [Pseudomonas fluorescens
            WH6]
 gi|311284348|gb|EFQ62926.1| two-component hybrid sensor and regulator [Pseudomonas fluorescens
            WH6]
          Length = 1381

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 128/767 (16%), Positives = 259/767 (33%), Gaps = 61/767 (7%)

Query: 52   SNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAF 111
            +  T        N    +  +                 D H  +  +SE   + +   A 
Sbjct: 526  NASTTAAVAPPPNKVSFNDIHLRALAKAAPPSVIV---DIHADILHMSEGAGRFLRYVAG 582

Query: 112  KMIGMRLCDVSDIL-HIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYS 170
            ++    L  +      +D    +    +       +      E       +D++A P   
Sbjct: 583  EIT-HNLLALVHPDLRLDIRTTLFQAQQSNIAVTSRKVRIQREQGTY--LVDISARPYRD 639

Query: 171  RNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP 230
                                           +    L   ++     ++ + D  S    
Sbjct: 640  DA----------------------------TENDYVLVMFQETEVDPQQSEADTISHAEN 671

Query: 231  PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG 290
                 ++ ++     +     +  +     L  S E      E+  +      T K+   
Sbjct: 672  QLMSTLERELQRTKLHLQDTIEQAEVSSEELKASNEEMQAINEELRSATEELETSKEELQ 731

Query: 291  TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFL 349
            ++          L  +   +     D+  +     +    I   FV  +  + +  P   
Sbjct: 732  SINEELLTVNYELKTKVEET-----DKVNDYLTNLIASTDIATVFVDRNMRIRWFTPRAT 786

Query: 350  LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
             L     VD       ++  LD P ++D+ A     L   +R   +   R          
Sbjct: 787  DLFSMLPVDTGRSLMDITHRLDYPHMTDDAATVFESLSIIEREISSKDGR---------- 836

Query: 410  SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD-GIAII 468
                        +             +    R  + ++ +   ++  + E+T D  I I+
Sbjct: 837  --WYIARLLPYRSSEDHIDGTVLTFIDITKRRQAEEELRLGEERMRLVAESTHDFAIIIL 894

Query: 469  NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528
            N  G I   N     +FGY  +++L   + +       S      +E+ +       E  
Sbjct: 895  NDHGAITDWNTGAELIFGYTKDEVLGAYYDLIFSPEDRSAGIPE-SELRAAREHGRGEDE 953

Query: 529  TLGSTKEEKLLSLR--IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
                 K+         + + K      Y     D++  K+ +++ S   +  +  S  K 
Sbjct: 954  RWHVRKDGSRFYCSGEVTLLKSASLQGYVKIARDLTGHKRTQDEQSQRLRETQTNSHLKD 1013

Query: 587  DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
            +F A +SHE++ PL  I   +E+++         P        I  + +    I++DLLD
Sbjct: 1014 EFFAVMSHELKHPLNLIQLNAELLRRLPATKTAAPAVR-AVETICEAVSSQARIIDDLLD 1072

Query: 647  ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706
            ++++ +GK+ L  +PV L   + +  S+V    + +++ ++T        + AD   ++Q
Sbjct: 1073 VARVRTGKLKLKKQPVDLIRTLQDIHSVVLADGHHRQVTLQTPSEPGALIVDADPTRIEQ 1132

Query: 707  IALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN- 765
            +  N+++NA+ FTP  GQ+ +  + + N    L V D+G G+ +  LEK    FGQ  N 
Sbjct: 1133 VIWNLVNNALKFTPQDGQVQLVLSRS-NGHAQLDVIDSGAGLADDSLEKIFDLFGQAENQ 1191

Query: 766  SQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFPLY 811
             Q  + EG G+GL L + +V+A+ G   + S     G    I  PL 
Sbjct: 1192 HQTHQREGLGIGLSLVRQLVEAHDGLVSVHSKGLGFGCTFSIRLPLS 1238


>gi|296185431|ref|ZP_06853841.1| PAS domain S-box domain-containing protein [Clostridium
           carboxidivorans P7]
 gi|296050265|gb|EFG89689.1| PAS domain S-box domain-containing protein [Clostridium
           carboxidivorans P7]
          Length = 566

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 80/360 (22%), Positives = 161/360 (44%), Gaps = 30/360 (8%)

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
             +L +IL++   G+  ++    I+  N    K+FG   + I         +     V  
Sbjct: 236 QNKLEAILKSMDSGVIAVDVNYKIIMINPYAKKIFGINGDIIGENLMDNIRDFEFEDVFK 295

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570
           +   + + + +    E+     T +         I  +         + DI++ K+ +  
Sbjct: 296 NTDEDYVEIKILWPKERNLRIRTAD---------IINVREKIGTVAVVQDITDIKRLE-- 344

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
                       + ++ F+A VSHE++TPLT+I GF+E +  +      N    ++ N I
Sbjct: 345 ------------NMRTQFVANVSHELKTPLTSIKGFAETL--RYVDDFKNKE--KFLNII 388

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
           +   + +  ++ND L +S IES  +    E + ++  + +   LV+  A +K I +  + 
Sbjct: 389 NDEADRLTRLINDTLTLSHIESS-IENKEEEIDVNFIIKDVCCLVKNSAEKKNIKV-LTI 446

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
            + +P +  D    KQ+ +N++ NAI ++ + G + I T    N+  I+ V D GVG++ 
Sbjct: 447 GDKVPNLKGDNDRFKQMLINLVDNAIKYSDNNGIVKIGTKLE-NDNCIIWVEDKGVGISK 505

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             +++  + F ++  ++     GTGLGL + K +V A  G   + S   KG+   +  P+
Sbjct: 506 EHIDRIFERFYRVDKARSRAQGGTGLGLAIVKHIVMALNGNIRVESEIGKGSKFILEIPI 565


>gi|255525673|ref|ZP_05392606.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           carboxidivorans P7]
 gi|255510659|gb|EET86966.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           carboxidivorans P7]
          Length = 561

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 80/360 (22%), Positives = 161/360 (44%), Gaps = 30/360 (8%)

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
             +L +IL++   G+  ++    I+  N    K+FG   + I         +     V  
Sbjct: 231 QNKLEAILKSMDSGVIAVDVNYKIIMINPYAKKIFGINGDIIGENLMDNIRDFEFEDVFK 290

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570
           +   + + + +    E+     T +         I  +         + DI++ K+ +  
Sbjct: 291 NTDEDYVEIKILWPKERNLRIRTAD---------IINVREKIGTVAVVQDITDIKRLE-- 339

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
                       + ++ F+A VSHE++TPLT+I GF+E +  +      N    ++ N I
Sbjct: 340 ------------NMRTQFVANVSHELKTPLTSIKGFAETL--RYVDDFKNKE--KFLNII 383

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
           +   + +  ++ND L +S IES  +    E + ++  + +   LV+  A +K I +  + 
Sbjct: 384 NDEADRLTRLINDTLTLSHIESS-IENKEEEIDVNFIIKDVCCLVKNSAEKKNIKV-LTI 441

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
            + +P +  D    KQ+ +N++ NAI ++ + G + I T    N+  I+ V D GVG++ 
Sbjct: 442 GDKVPNLKGDNDRFKQMLINLVDNAIKYSDNNGIVKIGTKLE-NDNCIIWVEDKGVGISK 500

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             +++  + F ++  ++     GTGLGL + K +V A  G   + S   KG+   +  P+
Sbjct: 501 EHIDRIFERFYRVDKARSRAQGGTGLGLAIVKHIVMALNGNIRVESEIGKGSKFILEIPI 560


>gi|254250800|ref|ZP_04944119.1| conserved hypothetical protein [Burkholderia cenocepacia PC184]
 gi|124879934|gb|EAY67290.1| conserved hypothetical protein [Burkholderia cenocepacia PC184]
          Length = 1468

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 128/734 (17%), Positives = 263/734 (35%), Gaps = 63/734 (8%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            ID    +  +S+   + + +   ++    +  V   L +D    I   L+   +   +  
Sbjct: 650  IDKESNVVHLSDNAGRFLRHVGGELSSNIMTLVLPDLRLDLRTAIFRALQTGTSVEARRV 709

Query: 149  LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
             W  +       I++   P + +                    +   L    D+    + 
Sbjct: 710  KWAHD--TRVSWINMTVRPFHDK------------------VANAEFLLIVFDEVAGRMT 749

Query: 209  EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
            E  +  +S +            P   +++ ++    E  A   +  +T    L  S E  
Sbjct: 750  EEDQAETSGQD-----------PVLAQLEQELQHSREQLATIIEQYETSVEELKASNEEL 798

Query: 269  LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
                E+  + +    + K+   ++      +   +  R   +  A  D    +    +  
Sbjct: 799  QAINEELRSTSEELESSKEELQSVNEELTTANAEMQARIEDTAKANDDLHNIIASSEI-- 856

Query: 329  CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388
                 FV     +    P+   +      D       ++  L  P L+D+       L  
Sbjct: 857  --ATVFVDKEIRVKRFTPNATAIFNLIDTDLGRSLFHITHALRYPTLADDVRQSFQSLRL 914

Query: 389  SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
             +R           I+        M  +P+  A+             +  D    +    
Sbjct: 915  IERE----------IESEAGRWYLMRLLPYRTAD--DHIDGAVITLIDITDRHHAEEAAR 962

Query: 449  IEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
                +L  + ++T D  I I +  G I+S N    ++FGY  E+++ +   +  E N   
Sbjct: 963  AGEQRLRLVAQSTKDYAIIIQDGHGAIVSWNAGAERIFGYTEEEMIGQDVELIYEPNDRQ 1022

Query: 508  VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWK 565
             +       ++    +  +      TK+ + +    ++  +  +  + ++  + D++  K
Sbjct: 1023 ALVPMREREVATREGRA-DDERWHRTKDGRRIFCSGVVTPISDTSFNGFAKIVRDMTLRK 1081

Query: 566  Q-------EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            Q          +   A++ A   +  K +F+A +SHE+R PL  I   SE +  +     
Sbjct: 1082 QSDDANREALAREQAAREQALSSNQLKDEFIAVLSHELRHPLNLIGVKSE-MLPRLPETR 1140

Query: 619  GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
              P   E A+ I ++      I++DLLD+S+I++GK+ L    V L   +       +  
Sbjct: 1141 DIPAVREAADSIRQAVRAQAQIIDDLLDLSRIQTGKLALELNRVDLTAMLRSIADTCERD 1200

Query: 679  ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738
             + + ++++T         LAD    +QI  N++SNA+ +T S G+I++   H     + 
Sbjct: 1201 VHARGLVLKTELPTEPAIALADPVRCEQIFWNLMSNALKYTQSHGEIVVRLAHE-GRMLR 1259

Query: 739  LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-T 797
            + V D G G+    L      F Q P  +     G G+GL L + +VD + G+    S  
Sbjct: 1260 VDVVDDGQGIDGDTLPHVFDMFRQAPRDRTR--GGLGIGLALVRQLVDMHGGRIAAASDG 1317

Query: 798  PAKGTLIEIIFPLY 811
            P  GT + +  P  
Sbjct: 1318 PGAGTTMTVWLPAA 1331


>gi|330894540|gb|EGH27201.1| PAS protein [Pseudomonas syringae pv. mori str. 301020]
          Length = 1037

 Score =  329 bits (843), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 127/749 (16%), Positives = 262/749 (34%), Gaps = 47/749 (6%)

Query: 75  VFDPIPRTVRFTWNI-DAHGYL-KEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH 132
            F+     V F++ + D    L   I+  L     +   +++G         L  D    
Sbjct: 70  KFESRLPPVGFSFAVRDDEQRLLTFINRALDSIEPSIGREVLGR-WTM---GLGADVEGQ 125

Query: 133 IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIY-SRNREFSGFRGFGIVHVNRVDN 191
              L        G    W +   ++ +        IY  +N ++ G     +  ++R+  
Sbjct: 126 RIRL-------TGAERRWLLNHPSVTIATTQHPPYIYKDKNGQWVGLNADVLSRISRM-T 177

Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD 251
             + + + +      +  ++ G + +     +   ++     L         +  +    
Sbjct: 178 GLQFVHQEVPSTQQSIEMLRAGLAEMNTSLAENAERRR---FLDFTYSFGGNSWMFVVCS 234

Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
           +         L  +  +LP +                   L++  +     +  R   + 
Sbjct: 235 ERSSRVSLDSLAGKVLALPARH-----------------ALEDLIRREHPLIQLRLVDTY 277

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
                  E+   +   +  +  +++  G L  A  S            I+    L  +L+
Sbjct: 278 DQARALVESGVADATIQNEVGAYLFPAGQLKVA-RSVDGQWSPDRFSVIKTQPELLGILN 336

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
                   A    +  +   + +          W R        +           +  +
Sbjct: 337 KALEEFPVAELRSIRLKWLGSALP-----QPSLWGRIPQWVFWVLALALLTGLVSLVWSS 391

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
            ++ +       +R++  ++    ++ +   + I + + +G ++S NR+  +  G   E 
Sbjct: 392 RLKVQIRQRLKAERQLNDQLAFKHALFDGIPNPIYVRDLKGRLISCNRSYEQSLGISFEQ 451

Query: 492 ILRKPFT--VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
           +  +  T    + +     M+     +L        ++    S K   +    +      
Sbjct: 452 MNGRRLTDVNLIPRALAEQMHTDYLNLLENHQPVFSDRTIELSGKRMDVWQWTVPFFAAD 511

Query: 550 FS-SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                      DI+E KQ + +L  A ++A + +  KS FLA +SHEIRTP+ AIIG  E
Sbjct: 512 GQLQGLLGGWVDITERKQLEQQLQKAMRLAAQANEAKSVFLASMSHEIRTPMGAIIGLLE 571

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
           +           P          RS   ++ ++ + LD+++IE+G M L     SL    
Sbjct: 572 LECAHALRKGHTPSQG--LQVAHRSATELVALIGESLDLARIEAGGMQLSLTVTSLQALF 629

Query: 669 SEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIII 727
              I L    A EK + +R  F+         D   ++Q+  N+L NA+ FT  G  ++ 
Sbjct: 630 EGVIELFSAQAREKDLELRLEFSEQAQGDYWLDPLRLRQVLHNVLGNALKFTRQGSVVLR 689

Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
                 +  V + ++D+G G+     +K  +PF Q  +       G GLGL + + +V+ 
Sbjct: 690 VVALDDSSRVRIAIQDSGEGIEPERQQKIFQPFTQASDDTAAHYGGGGLGLSITRQLVEL 749

Query: 788 NMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
             G   ++S P +GTL+ I  PL   S P
Sbjct: 750 MKGDISLYSEPGEGTLVNIDLPLVRVSEP 778


>gi|307309665|ref|ZP_07589317.1| multi-sensor signal transduction histidine kinase [Sinorhizobium
           meliloti BL225C]
 gi|307319462|ref|ZP_07598889.1| multi-sensor signal transduction histidine kinase [Sinorhizobium
           meliloti AK83]
 gi|306894834|gb|EFN25593.1| multi-sensor signal transduction histidine kinase [Sinorhizobium
           meliloti AK83]
 gi|306899877|gb|EFN30500.1| multi-sensor signal transduction histidine kinase [Sinorhizobium
           meliloti BL225C]
          Length = 775

 Score =  329 bits (843), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 117/658 (17%), Positives = 241/658 (36%), Gaps = 51/658 (7%)

Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA 248
              D       + +        + G   + +    I  + +   +      V   +    
Sbjct: 129 EILDAGIFLLTVRRDGRVFAGTQDGVHLIGRTLSAIAPEVATLQYYGEGASVVRASIDGT 188

Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
                L+           ++   + +    +        + G         + Y      
Sbjct: 189 EHFIALRQLPDSGGAVLAATSIARFEAAWRDEISLNVTLFAGVSAILMVVLYAYYIQAKR 248

Query: 309 PS-LSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGL 366
                A F E        + +     + +       + + S   +   +    +   G  
Sbjct: 249 TRDADAVFAESNLRVETALSRGRCGLWDFDLDNRRLFWSRSMYEMLGMQGDASVLSFGDA 308

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
           + L+           + +   + +   I    ++  ++    + + +             
Sbjct: 309 ARLMHVEDRGIYRVARAI--AKGNERQID---QVFRMRHADGHYVWLRARAQVIRTVSGR 363

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
                GI  +  +     ++      +L   +E TS+   + ++   ++  N    + + 
Sbjct: 364 -THLIGIAMDVTEQHRLAQRYAEADQRLADAIECTSEAFVLWDKHDRLVMCNTHYQQAWQ 422

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
            P   ++       +     +     +   ++   R    + +     +E+ L +     
Sbjct: 423 LPDHVLVPGTERTIVH---AAAARPVVERRIADPDRSNHSQTSEVQLADERWLQINERRT 479

Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSH--------------------------------- 573
           +            DI+  K+ + +L                                   
Sbjct: 480 R---DGGLVSVGTDITLLKRHQVRLRESERRLMATIGDLSASRVTLEQQKAELSIANANY 536

Query: 574 --AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
              K+ AE  +  KS+FLA +SHE+RTPL AI+GFSE++++Q FGPLG+ +Y EY+  I 
Sbjct: 537 QAEKERAEAANRAKSEFLANMSHELRTPLNAILGFSEILQDQMFGPLGSEKYHEYSRDIF 596

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
            SG  +L+++ND+LD+SKIE+G M +  E + L   + E +    + A  K I +    +
Sbjct: 597 ESGKHLLNVINDILDMSKIEAGHMRITRERIDLAPLIEETLRFTTIPAERKNIRVVQQIS 656

Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751
           + +  + AD R++KQ+ LN+LSNA+ FT  GG+I +         V L + D+G+G+   
Sbjct: 657 SGL-TMFADRRAMKQVLLNLLSNAVKFTNEGGRISLRARKV-RGAVTLTIADSGIGIPKG 714

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            L+K  +PF Q+ +       G+GLGL +++++   + G   I S    GT+I +  P
Sbjct: 715 ALQKIGQPFEQVQSQYAKSKGGSGLGLAISRSLTRLHGGTMKIHSAENVGTIISVRIP 772



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/398 (9%), Positives = 100/398 (25%), Gaps = 21/398 (5%)

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
            D +     E +           +    +         ++  ++ E    +   +    +
Sbjct: 5   ADARRGSAAEGRLRLKFPGFSGLEREFIEQAKIFAEPASQKLAMAEPMLKRSIPVLIIAF 64

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
            L+ +        ++   +  +                ++                   E
Sbjct: 65  LLIVAISRMSGIMDEHARMEASSRRTVSLAAAAAAGVFQTGGSELFAEGRRWEVERRLTE 124

Query: 320 NLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
            L  E +D       V   G +F      + L              L    +   +   +
Sbjct: 125 FLPAEILDAGIFLLTVRRDGRVFAGTQDGVHLIGRTLSAIAPEVATLQYYGEGASVVRAS 184

Query: 380 AIKP---VMLYRSDRTCIAASARLHTIQ----WNRENSLAMTFIPFEKA--NQFPENMPQ 430
                  + L +   +  A  A     +    W  E SL +T      A           
Sbjct: 185 IDGTEHFIALRQLPDSGGAVLAATSIARFEAAWRDEISLNVTLFAGVSAILMVVLYAYYI 244

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490
                 D D    +  + +E     + L     G+   + +   L  +R++ ++ G   +
Sbjct: 245 QAKRTRDADAVFAESNLRVE-----TALSRGRCGLWDFDLDNRRLFWSRSMYEMLGMQGD 299

Query: 491 D--ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
              +        +      +    +   ++    + ++++      +   + LR   + +
Sbjct: 300 ASVLSFGDAARLMHVEDRGIYR--VARAIAKGNERQIDQVFRMRHADGHYVWLRARAQVI 357

Query: 549 PFSSC---YSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
              S          D++E  +   + + A +       
Sbjct: 358 RTVSGRTHLIGIAMDVTEQHRLAQRYAEADQRLADAIE 395



 Score = 45.8 bits (107), Expect = 0.034,   Method: Composition-based stats.
 Identities = 30/378 (7%), Positives = 87/378 (23%), Gaps = 15/378 (3%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN--HIGDLLKRQNTW 143
            W+ D        S  + + +G      + +   D + ++H++      +   + + N  
Sbjct: 274 LWDFDLDNRRLFWSRSMYEMLGMQGDASV-LSFGDAARLMHVEDRGIYRVARAIAKGNER 332

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                         YV +   A  I + +         GI       +         D++
Sbjct: 333 QIDQVFRMRHADGHYVWLRARAQVIRTVSGR---THLIGIAMDVTEQHRLAQRYAEADQR 389

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL-RMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
            +   E       +  +   +    +      ++ + V                      
Sbjct: 390 LADAIECTSEAFVLWDKHDRLVMCNTHYQQAWQLPDHVLVPGTERTIVHAAAARPVVERR 449

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
            ++       +       ++   +      ++    S                +    L 
Sbjct: 450 IADPDRSNHSQTSEVQLADERWLQINERRTRDGGLVSVGTDITLLKRHQVRLRESERRLM 509

Query: 323 PETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
               D              L  AN ++    +     +   +  L+ +    +   N  +
Sbjct: 510 ATIGDLSASRVTLEQQKAELSIANANYQAEKERAEAANRAKSEFLANMSHELRTPLNAIL 569

Query: 382 KPVMLYRSD--RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
               + +        +     ++          +  I         E             
Sbjct: 570 GFSEILQDQMFGPLGSEKYHEYSRDIFESGKHLLNVINDILDMSKIEAGHM-----RITR 624

Query: 440 TRINKRKMEIEVMQLCSI 457
            RI+   +  E ++  +I
Sbjct: 625 ERIDLAPLIEETLRFTTI 642


>gi|37678828|ref|NP_933437.1| aerobic respiration control sensor protein ArcB [Vibrio vulnificus
           YJ016]
 gi|37197569|dbj|BAC93408.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
          Length = 780

 Score =  328 bits (842), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 90/391 (23%), Positives = 175/391 (44%), Gaps = 19/391 (4%)

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
            +E E       + ++      L S ++A+ D I   N EG+    NRA+ +L G     
Sbjct: 135 DLENEVFQRERTQVELAERTALLRSFIDASPDLIYYRNAEGVFSGCNRAMEELTGKKEHQ 194

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
           ++         +     +     ++ + +   T E+        +    LR +       
Sbjct: 195 LVGLSPWDVYSKEVAQQIVDTDQQVFANNRALTYEQWLEYPDGRKHYFELRKVPFYSKDG 254

Query: 552 S--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                     DI+E K+ +  L       EK S  K+ F++ +SHE+RTPL  I+G S +
Sbjct: 255 RHLGLVGFGRDITERKRHEESL-------EKASRDKTTFISTISHELRTPLNGIVGLSRM 307

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           + + R          +Y   I+ S   + +I ND++D+ K +  K+ L   P++ ++ V+
Sbjct: 308 LLDTRL----TDEQRKYMQTINVSAITLGNIFNDIIDMDKFDRRKLELLPAPLNFEDFVA 363

Query: 670 EAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI-II 727
           E  S+  L A +K +       + +P+ I  D   ++Q+  N++SNA+ FT  GG +  +
Sbjct: 364 EIESISALMAEQKGLRFDLERLSELPKAIEVDATRLRQVIWNLISNAMKFTKEGGVVMTV 423

Query: 728 STTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGEGTGLGLPLAKAMV 785
           S+    +   +I+ V DTG+G+   EL+K    + Q+ + +      GTG+GL +++ ++
Sbjct: 424 SSEVEEDFATIIIEVEDTGIGIPEAELDKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLI 483

Query: 786 DANMGKFYIFSTPAKGTLIEIIF--PLYDTS 814
           +   G   + S    G+   I    P+ +++
Sbjct: 484 NMMDGDITVSSEEGFGSTFTISIHVPVIESA 514



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/240 (12%), Positives = 63/240 (26%), Gaps = 24/240 (10%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTT 148
           +A G     +  + +  G    +++G+   DV          +    +         +  
Sbjct: 172 NAEGVFSGCNRAMEELTGKKEHQLVGLSPWDVYSKEVAQQIVDTDQQVFANNRALTYEQW 231

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           L   +G       +L  +P YS++    G  GFG               ++  +  +   
Sbjct: 232 LEYPDGR--KHYFELRKVPFYSKDGRHLGLVGFG--RDITERKRHEESLEKASRDKTTFI 287

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY----------------AHKDD 252
                          I          R+ ++     +                    K D
Sbjct: 288 STISHELRT--PLNGIVGLSRMLLDTRLTDEQRKYMQTINVSAITLGNIFNDIIDMDKFD 345

Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
             K E  P   + E  + E E    +   Q   +     L +   ++ E  + R    + 
Sbjct: 346 RRKLELLPAPLNFEDFVAEIESISALMAEQKGLRFDLERL-SELPKAIEVDATRLRQVIW 404


>gi|57235028|ref|YP_180886.1| sensory box sensor histidine kinase [Dehalococcoides ethenogenes
           195]
 gi|57225476|gb|AAW40533.1| sensory box sensor histidine kinase [Dehalococcoides ethenogenes
           195]
          Length = 581

 Score =  328 bits (842), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 95/454 (20%), Positives = 185/454 (40%), Gaps = 29/454 (6%)

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
            +     G +   +    L    A   + ++ +              +      +    I
Sbjct: 156 EEVYAAVGDVDRTILLSALISILAAGLLAVWVAASLTRPIKELTAIARRIARGQMDAVQI 215

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476
                 +  E      +  E +   IN   +  E  +L ++LE   DGI +++ EG I  
Sbjct: 216 EVSGKGEMEELAHAFRLMTERLRDSIN--AVSSERDRLSAVLERMGDGIFLLDCEGTISL 273

Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
            N A  ++F    E ++   F   +  +    ++       S   ++             
Sbjct: 274 LNPAAERIFKLEAEHVIGHSFVEAIRDH---EIHSIFEHSKSSGKQEMGFVEL----ASG 326

Query: 537 KLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
           +   L II   L   S Y + + D+SE ++ +                + DF+A +SHE+
Sbjct: 327 RRF-LGIIATPLVSQSGYLVLVQDLSELRRLE--------------KVRRDFVANISHEL 371

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTP++++   +E ++              +   I    + +  +V +L D+S IESG+  
Sbjct: 372 RTPISSLKLLTETLQEGAASDAAV--AAGFIEKIHLEVDKLAQLVTELSDLSAIESGQAV 429

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716
           L+ +P  +  A+  A + +   A    I +       +P++  D   ++Q+ +N++ NAI
Sbjct: 430 LNLQPGDISTAIKLAAARLSPQAERAGISLGVELPETLPQVKLDENRIEQVLVNLVHNAI 489

Query: 717 HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
            FTP GG+I I    T  + +++ V D+G+G+   +L +  + F ++  ++   G GTGL
Sbjct: 490 KFTPKGGRIKIG-ARTQGQILVVYVSDSGIGIPEDDLTRVFERFYKVDKARS--GGGTGL 546

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           GL ++K +V A+ G  +  S   KG       PL
Sbjct: 547 GLAISKHIVQAHGGNIWAESRYGKGATFSFSLPL 580


>gi|326804030|ref|YP_004321848.1| PAS domain S-box protein [Aerococcus urinae ACS-120-V-Col10a]
 gi|326651194|gb|AEA01377.1| PAS domain S-box protein [Aerococcus urinae ACS-120-V-Col10a]
          Length = 623

 Score =  328 bits (842), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 83/376 (22%), Positives = 166/376 (44%), Gaps = 30/376 (7%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           R  +   E E  +L S+L+  +DG+   +R   ++ TN    +L G    +I+       
Sbjct: 260 REAQESTESERQRLDSVLKHMTDGVIATDRRSRVMITNNRACELIGKKEAEIMGHSIMEV 319

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL--SLRIIIKKLPFSSCYSLTM 558
           L           L           +         +E ++   L +I ++  + S     +
Sbjct: 320 LNLRDKYTFRELLNS------ESDILMHFTSDDGQESIIKGELSVIQRESGYVSGLVWVL 373

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            D++E ++ +                +  F++ VSHE+RTPLT++  +SE + +      
Sbjct: 374 TDVTEHEKIE--------------RDRRQFVSNVSHELRTPLTSVRSYSEALADGAI--K 417

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
            +   +E+   I R  + ++ +++DLL++S+++S +  ++ E +     V+  +    + 
Sbjct: 418 DSELAVEFLGVIQRETDRMIRMISDLLNLSRMDSNRQEMNLELIDFQGLVNHILDRFDMM 477

Query: 679 ANEKRI-----LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
              +        I+     +   + AD   + Q+  NIL+NAI ++P GG I +    T+
Sbjct: 478 IQSEDYVNEEYHIQRELTKSPIWVEADQDRLTQVIDNILNNAIKYSPDGGTITVRL-MTT 536

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
           + E IL V+D G+G+    L      F ++  ++  +  G+GLGL +AK +V+ + GK +
Sbjct: 537 HNEAILSVQDQGLGIPQKALGHVFDRFYRVDKARSRQQGGSGLGLAIAKEVVELHHGKIW 596

Query: 794 IFSTPAKGTLIEIIFP 809
             S   KG+   I  P
Sbjct: 597 ANSIENKGSTFFISLP 612


>gi|221198638|ref|ZP_03571683.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
           CGD2M]
 gi|221181089|gb|EEE13491.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
           CGD2M]
          Length = 763

 Score =  328 bits (842), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 104/618 (16%), Positives = 210/618 (33%), Gaps = 30/618 (4%)

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
               +    ++V +     F   + P  +      +           +       L+ + 
Sbjct: 9   ATAVMFVAIATVLQALAIRFGGANMPLAVYYPLLAAIAWATSFLFGLIATLASSVLVWTL 68

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
             S P               +     +   +  +    +   +                 
Sbjct: 69  FLSDPAAYAMSLSERLVRLGEFALIGVLACAVVAAVRHARVTNERARRREAAARAQFEAL 128

Query: 326 VDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
           ++  P           L Y N +   L   +  D    AG     +      D   ++  
Sbjct: 129 LNALPDGVIAADTNARLTYVNAAAAALLGCRPDDA---AGRALRDVLQLTDRDGRRVQTS 185

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
            L  +       +   H ++      + +       A+          +  +    R   
Sbjct: 186 ALEHALGGTRT-TCERHWLRAAGGEPVPVAETAAPIADADGNVDGAVLLLRDASADRARA 244

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
              ++      ++++A+ D +  I+R+  I+S N A  ++FGY  E    + F   +   
Sbjct: 245 DAAQVR----RAVVDASPDALIGIDRDARIVSWNPAAQRIFGYDEEAAYGRRFDSLIAM- 299

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564
              +  H L +              L   ++       +  + +   +   + +  I+  
Sbjct: 300 -RWLKRHPLVQTFDHLREIVGPVDLLCVRRDGGRFRATVAARPVRGEARDGVALS-ITLR 357

Query: 565 K------------QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
           +            +       A + A   +  K + LA VSHE+RTPL  I G+ EV++N
Sbjct: 358 ETGAQRRQDRRTQRSLRSARDAGEQAATSNRLKDELLATVSHELRTPLNVIYGWIEVLRN 417

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
                L     ++  + IDRS   +  +V D+LD S + +GK+ L   PV +    ++ +
Sbjct: 418 SGDDTL----RVQAIDAIDRSARSLTRMVGDILDASSLSTGKLRLDTMPVDVVRLFADVV 473

Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
           +  Q  A+   I +          +  D   ++Q+  N++SNA+ FTP+GG + +S  H 
Sbjct: 474 AAFQTAASSAGIALEFESRVATCIVSGDAERLRQMLSNLVSNALKFTPAGGDVTVSVAH- 532

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
            +   +L V DTG G+    +      F +  +S      G GLGL + + +V  + G  
Sbjct: 533 DDTHAVLTVTDTGQGIAPEFVPHVFDMFRRADDSPASSRRGLGLGLSIVRHIVQLHGGTV 592

Query: 793 YIFST-PAKGTLIEIIFP 809
            + S    +GT   +  P
Sbjct: 593 VVDSAGRNRGTTFTVKLP 610



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/260 (12%), Positives = 64/260 (24%), Gaps = 21/260 (8%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR--QNTWYGKT 147
           D +  L  ++      +G       G  L DV  +   D        L+     T     
Sbjct: 140 DTNARLTYVNAAAAALLGCRPDDAAGRALRDVLQLTDRDGRRVQTSALEHALGGTRTTCE 199

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
             W        VP+   A PI   +    G                 A  +R     S  
Sbjct: 200 RHWLRAAGGEPVPVAETAAPIADADGNVDGAVLLLRDASADRARADAAQVRRAVVDASPD 259

Query: 208 H----EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK------------- 250
                +      S       IF       + R  + + ++     H              
Sbjct: 260 ALIGIDRDARIVSWNPAAQRIFGYDEEAAYGRRFDSLIAMRWLKRHPLVQTFDHLREIVG 319

Query: 251 --DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
             D +          +  ++ P + +         T ++     + + +      S R+ 
Sbjct: 320 PVDLLCVRRDGGRFRATVAARPVRGEARDGVALSITLRETGAQRRQDRRTQRSLRSARDA 379

Query: 309 PSLSAYFDEGENLTPETVDK 328
              +A  +  ++    TV  
Sbjct: 380 GEQAATSNRLKDELLATVSH 399



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/280 (10%), Positives = 61/280 (21%), Gaps = 15/280 (5%)

Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD 251
              AL   L        +     + V      +   +      R    V  LT+      
Sbjct: 124 QFEALLNALPDGVIA-ADTNARLTYVNAAAAALLGCRPDDAAGRALRDVLQLTD---RDG 179

Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
             ++T           +  E+              +    + +        +      S 
Sbjct: 180 RRVQTSALEHALGGTRTTCERHWLRAAGGEPVPVAETAAPIADADGNVDGAVLLLRDASA 239

Query: 312 SAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGG----- 365
                +   +    VD  P     +     +   NP+   +  Y                
Sbjct: 240 DRARADAAQVRRAVVDASPDALIGIDRDARIVSWNPAAQRIFGYDEEAAYGRRFDSLIAM 299

Query: 366 ---LSTLLDAPKLSDNNAIKPVMLY--RSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
                  L          + PV L   R D     A+     ++    + +A++    E 
Sbjct: 300 RWLKRHPLVQTFDHLREIVGPVDLLCVRRDGGRFRATVAARPVRGEARDGVALSITLRET 359

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
             Q  ++           D             +L + +  
Sbjct: 360 GAQRRQDRRTQRSLRSARDAGEQAATSNRLKDELLATVSH 399



 Score = 55.4 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/226 (11%), Positives = 62/226 (27%), Gaps = 6/226 (2%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID    +   +    +  G       G R   +  +  +  +  +      +    G   
Sbjct: 264 IDRDARIVSWNPAAQRIFGYDEEAAYGRRFDSLIAMRWLKRHPLVQTFDHLREIV-GPVD 322

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           L  +          +AA P+    R+     G  +    R     R   +R  +      
Sbjct: 323 LLCVRRDGGRFRATVAARPVRGEARD-----GVALSITLRETGAQRRQDRRTQRSLRSAR 377

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           +  +  ++  + K ++ +  S      +      +       DD L+ +    +     S
Sbjct: 378 DAGEQAATSNRLKDELLATVSHELRTPLNVIYGWIEVLRNSGDDTLRVQAIDAIDRSARS 437

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
           L           +  T K    T+  +    F  +      + S+ 
Sbjct: 438 LTRMVGDILDASSLSTGKLRLDTMPVDVVRLFADVVAAFQTAASSA 483


>gi|83815062|ref|YP_444248.1| utilizing regulatory protein tutC [Salinibacter ruber DSM 13855]
 gi|83756456|gb|ABC44569.1| utilizing regulatory protein tutC [Salinibacter ruber DSM 13855]
          Length = 1067

 Score =  328 bits (842), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 128/772 (16%), Positives = 269/772 (34%), Gaps = 66/772 (8%)

Query: 86   TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
             +       L   +E L   +G  +   +      V      D    +     R +   G
Sbjct: 305  IYRSTPDDGLVYANEALADMLGYRSVDALLEADP-VHFYADPDQRAQVIQQSNRNDGITG 363

Query: 146  KTT-LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
                    +GT       L+A  +   +     + G   V             ++  +++
Sbjct: 364  VEVEFRRTDGTTFTGL--LSATTVRGPDGAVQYYDG--AVTEITEQKRQEQQLRQSRERW 419

Query: 205  SHLHE---------IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255
              L E         +      +     +I    +P     + + +         + ++ +
Sbjct: 420  RRLVEKLQDGLHIAVDGDIRYINPAGAEILGADAPDDV--IGHSLWDFVALEQAQQEIFE 477

Query: 256  TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ--NNSKESFEYLSHRNHPSLSA 313
                 +     S+ P++ +   +N  +   + Y   ++          +        +  
Sbjct: 478  DRLRKIYRERTSTAPQEMEITGLNGERRVIESYTVPIKFDGEQAGQTVFRDITEQKEMEQ 537

Query: 314  YFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
               E E       +      +  +    L YAN +F  +  Y+SV+ I     +  L   
Sbjct: 538  ALREREARLRSITENVSDGIYRSTPNKGLVYANRAFADIFGYESVEAILQIDPIE-LYAN 596

Query: 373  PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
            P              R  +      A     +    ++           ++  E +  +G
Sbjct: 597  PDARSE-------NRRITKEQDHIDAAEAEFRRKDGSTFTGLVSATTVRDENDEVIYYDG 649

Query: 433  IEPEDVDTRINKRKMEIEVMQLCSILEAT--------SDGIA---------IIN------ 469
               +  + +   R +     +L S+  AT         D +A         + +      
Sbjct: 650  AITDITEQKEQARTLRDRQQKLESLYTATRHLLRAETPDAVATRIQHVLQDVFDYPLAGV 709

Query: 470  ---REGIILSTNRAVS---KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
                +G ++    A++   ++                  ++  +V+   +  + +     
Sbjct: 710  DFAEDGRLVPVEGAIASPGQMPTIQSLSAGGDSIGARAYRSGETVVVQNVEALDNDVAYG 769

Query: 524  TLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS------EWKQEKNKLSHAKKI 577
             L  +         ++ +         +    L    ++      +    + KL  AK+ 
Sbjct: 770  GLRSVACAPMGTHGVVLMGQTSHDAFDAFNLRLVEVLVTYAAVVLDRLGREQKLREAKET 829

Query: 578  AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
            AE+ +  KS FLA +SHEIRTPLT+IIGF+E I ++  G  G+P    +A  I++ G  +
Sbjct: 830  AEQVNEMKSAFLANMSHEIRTPLTSIIGFAEAIGDEVSG--GDPTVSRFAGLIEKGGRRL 887

Query: 638  LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697
            L+ ++ +L++SK+E+ +M L   P+++ E  ++  +L +  A +  I +R    +     
Sbjct: 888  LETLDAVLNLSKLEAEEMELALAPLNVAEQAADTGALFEQQAEKAGIDLRVDVPSGPLWA 947

Query: 698  LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757
             AD  +++ +  N++SNA+ +T  GG++ I      + + +L V DTG GM    +    
Sbjct: 948  RADEGALRIVLRNLVSNAVKYTGDGGRVWIRARRAED-QAVLEVEDTGQGMDPAAVSTLF 1006

Query: 758  KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            + F Q    +    EGTGLGL + K  VD   G   + +    G+   +  P
Sbjct: 1007 EAFKQASEGKGREYEGTGLGLAVTKQAVDQMEGTIDVDTEKGVGSRFVVRLP 1058



 Score =  151 bits (381), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 62/534 (11%), Positives = 156/534 (29%), Gaps = 37/534 (6%)

Query: 81  RTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKR 139
            T +FT  +   G L E ++   +  G    +++G    D        +    +   +++
Sbjct: 161 HTYQFTGLLTPDGILVEANDTALEFGGLEREEVVGTPFWDTHWWQTGPETQQKLRAAVEQ 220

Query: 140 QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199
                       ++G +    ID +  P+   +   +     G               ++
Sbjct: 221 AAEGEFVRYEADVQGADETRTIDFSIRPVTDGDGSVTMLIPEG--RDITDRKRQERQLRK 278

Query: 200 LDKKFSHLHEIKKGHS-SVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
             +K     + +     S+ +   +   + +P   L   N+  +    Y   D +L+ + 
Sbjct: 279 EKRKTEEALQARDALLGSITENISEGIYRSTPDDGLVYANEALADMLGYRSVDALLEADP 338

Query: 259 YPLLTSEESSLPE-------------QEDFHTINLNQYTKKQYFGTLQNNSKES----FE 301
                  +                  + +F   +   +T      T++            
Sbjct: 339 VHFYADPDQRAQVIQQSNRNDGITGVEVEFRRTDGTTFTGLLSATTVRGPDGAVQYYDGA 398

Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIE 361
                          +        V+K      +   G++ Y NP+   +    + DD+ 
Sbjct: 399 VTEITEQKRQEQQLRQSRERWRRLVEKLQDGLHIAVDGDIRYINPAGAEILGADAPDDVI 458

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                  +       +    +   +YR   +       +  +  N E  +  ++    K 
Sbjct: 459 GHSLWDFVALEQAQQEIFEDRLRKIYRERTSTAPQEMEITGL--NGERRVIESYTVPIKF 516

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
           +             +  + +  ++ +     +L SI E  SDGI        ++  NRA 
Sbjct: 517 DGEQAGQTVF---RDITEQKEMEQALREREARLRSITENVSDGIYRSTPNKGLVYANRAF 573

Query: 482 SKLFGYPVEDILRK--PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
           + +FGY   + + +  P  ++   +  S         ++ +             K+    
Sbjct: 574 ADIFGYESVEAILQIDPIELYANPDARSE-----NRRITKEQDHIDAAEAEFRRKDGSTF 628

Query: 540 SLRIIIKKLPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
           +  +    +   +         + DI+E K++   L   ++  E   +     L
Sbjct: 629 TGLVSATTVRDENDEVIYYDGAITDITEQKEQARTLRDRQQKLESLYTATRHLL 682



 Score = 77.8 bits (190), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 27/271 (9%), Positives = 71/271 (26%), Gaps = 15/271 (5%)

Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
            D             +           +      +  A     L D P ++ +  I+   
Sbjct: 38  ADGLRDAGLQDEGDGIKA--RLCTRALRSPGATVVTNATDDDRLADHPWVAGDPGIRFYA 95

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
                         L  +    ++                       +   +++      
Sbjct: 96  GAPLVGPQGHRIGSLCVLDTEAQS---------PPPADVDRLKGLAEMIVNELELHRQAD 146

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
             +    Q  +I   T     ++  +GI++  N    +  G   E+++  PF       T
Sbjct: 147 AWDRARQQYEAIFNHTYQFTGLLTPDGILVEANDTALEFGGLEREEVVGTPFWDTHWWQT 206

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM----HDI 561
                  L   +         +        ++  ++   I+ +         +     DI
Sbjct: 207 GPETQQKLRAAVEQAAEGEFVRYEADVQGADETRTIDFSIRPVTDGDGSVTMLIPEGRDI 266

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
           ++ K+++ +L   K+  E+    +   L  +
Sbjct: 267 TDRKRQERQLRKEKRKTEEALQARDALLGSI 297


>gi|300088283|ref|YP_003758805.1| multi-sensor signal transduction histidine kinase [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299528016|gb|ADJ26484.1| multi-sensor signal transduction histidine kinase [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 581

 Score =  328 bits (842), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 87/370 (23%), Positives = 174/370 (47%), Gaps = 25/370 (6%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +     +  E  +L ++L    DG+ + ++EGII + NR  SKLFG+  +++  K     
Sbjct: 236 KSTMEAVSAEKAKLSTVLNNMVDGVILTDKEGIISTANRTASKLFGFEDKNVSGKSIIEV 295

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
           + ++    ++  L   L     Q+ +  +  +    + + +          S   L   D
Sbjct: 296 VREH---EVDAVLVRCLQTSKEQSAQFESAVTK---RFIRVIAAPVIDGKPSEILLLFQD 349

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           ++E +  +                + + +  +SHE+RTP+T I    E + +        
Sbjct: 350 LTELRNLQT--------------MRKELVGNISHELRTPITGIKAMVETLHDGAID--DK 393

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
               ++   I+   + +   V++L ++S+IE+GK  L  EP+ L+  V + I  +Q  A 
Sbjct: 394 EAAKDFLTRIESEVDRLAQTVSELTELSRIETGKAELRLEPLDLNVLVKDVIEQLQPLAE 453

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
            +++ +  + A ++P +LAD   ++Q  +N++ NA+ F   GG + + T  T+N EVI+ 
Sbjct: 454 RQQVTVSATLAKDLPEVLADRDRIRQTIINLVHNAVKFNRVGGNVKLYTK-TNNNEVIVD 512

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           + DTG+G++  +L    + F +   ++     G+GLGL +AK  + A+ GK ++ S    
Sbjct: 513 ISDTGIGISKDDLPHVFERFYKADRARSKS--GSGLGLAIAKHTIQAHNGKIWVASEQGN 570

Query: 801 GTLIEIIFPL 810
           G+      PL
Sbjct: 571 GSTFSFSLPL 580


>gi|288941101|ref|YP_003443341.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
 gi|288896473|gb|ADC62309.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
          Length = 970

 Score =  328 bits (842), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 106/559 (18%), Positives = 206/559 (36%), Gaps = 51/559 (9%)

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH--GNLFYANPSFLL---- 350
           +   E  +        A  D  E      +   P   F      G L  A  SF      
Sbjct: 48  RAVLEATTDSLDEIRQARLDLAEGFLHWNLADTPDAPFSRDSALGLLRQAIQSFEQALDV 107

Query: 351 --LTKYKSVDDIEI-AGGLSTLLDAPKLSDNNAIKPVMLYR---------SDRTCIAASA 398
                  + +            L      D    + ++  R         +++  IA   
Sbjct: 108 PGWLDMAAAEPFRRNVLEFERRLIDWNPDDPAKPRTLVQLRILYAELERQAEQLDIAVRN 167

Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE---DVDTRINKRKMEIEVMQLC 455
            L  +    +++ A+T      +      +    I  +          +  +      L 
Sbjct: 168 TLTRLDRQSDHNFALTLGGSALSLLLIIAILAVAIRQQHLMLAARTEAENALRESQTLLQ 227

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           ++  A  D + + +  G+ L  N     L G P  +I+ K    F+++    +       
Sbjct: 228 TLFRAIPDLVWLKDPNGVFLGCNPRFESLLGLPEAEIVGKTDYDFVDRAQADLFRANDQN 287

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKL 571
            ++        +  L    +     ++++   +  S+           DI+  K  + +L
Sbjct: 288 AIAAGGPHV-NEEVLAFASDGHRELIQVVKTPIRDSAGTLIGVLGIGRDITALKLTEQEL 346

Query: 572 SHAK------------------KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
            + +                  + AE  +  KS FLA +SHEIRTP+ A++GF  ++  +
Sbjct: 347 QNHRDHLEDLVAERTAELMAAREQAEAANQAKSVFLATMSHEIRTPMNAVLGFCNLLYRR 406

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
           R     +    +    I  SG L+L+++ D+LD S+IE+ ++ +   P  L   + +  +
Sbjct: 407 RL----DAESHDLVRKIQVSGALLLNLIEDILDFSRIEANRLEIAASPFDLRRVLEDLAA 462

Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHT 732
           +++  A  K + +  +    +  ++ D R +KQ+ L +L+NA+ FT  G  +I +     
Sbjct: 463 IMETEAGRKGLELEIAPLPEVNDLIGDERRLKQVLLKLLANAVKFTEQGRVEIRVDLESE 522

Query: 733 SNEEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
              EV     VRD+G+G+   +       F Q   S   R  GTGLGL +++ +V A  G
Sbjct: 523 DMREVRLRFSVRDSGIGIAPAQQAAIFSAFNQADGSISRRFGGTGLGLAISQQLVHAMGG 582

Query: 791 KFYIFSTPAKGTLIEIIFP 809
           +  + S   +G+      P
Sbjct: 583 RLQVTSELGRGSEFWFELP 601



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 42/424 (9%), Positives = 91/424 (21%), Gaps = 44/424 (10%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTW 143
             W  D +G     +      +G    +++G    D  D    D       + +      
Sbjct: 236 LVWLKDPNGVFLGCNPRFESLLGLPEAEIVGKTDYDFVDRAQADLFRANDQNAIAAGGPH 295

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +              I +   PI        G  G G               +     
Sbjct: 296 VNEEV-LAFASDGHRELIQVVKTPIRDSAGTLIGVLGIG--RDITALKLTEQELQNHRDH 352

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPH-----------------------LRMKNKV 240
              L   +       +E+ +  +Q                              R+  + 
Sbjct: 353 LEDLVAERTAELMAAREQAEAANQAKSVFLATMSHEIRTPMNAVLGFCNLLYRRRLDAES 412

Query: 241 SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF 300
             L         +L      +L          E   +    +   +     ++  +    
Sbjct: 413 HDLVRKIQVSGALLLNLIEDILDFSRIEANRLEIAASPFDLRRVLEDLAAIMETEAGRKG 472

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYAN-------PSFLLLTK 353
             L     P ++    +   L    +            G +               L   
Sbjct: 473 LELEIAPLPEVNDLIGDERRLKQVLLKLLANAVKFTEQGRVEIRVDLESEDMREVRLRFS 532

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKP-----VMLYRSDRTCIAASARLHTIQWNRE 408
            +           + +  A   +D +  +      + L  S +   A   RL        
Sbjct: 533 VRDSGIGIAPAQQAAIFSAFNQADGSISRRFGGTGLGLAISQQLVHAMGGRLQVTSELGR 592

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM-----EIEVMQLCSILEATSD 463
            S     +PF +  +    +       +        R +     EI    +  +LE    
Sbjct: 593 GSEFWFELPFRRDPRALSGVTAAQPSEDAAPRLRGVRVLVVDDTEINRDLMQYVLEGMGA 652

Query: 464 GIAI 467
            + +
Sbjct: 653 SVVL 656


>gi|163851209|ref|YP_001639252.1| PAS sensor protein [Methylobacterium extorquens PA1]
 gi|163662814|gb|ABY30181.1| PAS sensor protein [Methylobacterium extorquens PA1]
          Length = 1125

 Score =  328 bits (842), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 114/624 (18%), Positives = 211/624 (33%), Gaps = 51/624 (8%)

Query: 223 DIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQ 282
            I    +  P  R       L +     D            +       +  F   +   
Sbjct: 225 RIAGLDAAAPTTRHP----GLAQLCHPADRGRVEAIIAAAIAGGQDFEVETRFVRPDKTI 280

Query: 283 YTKKQYFGTLQNNSKESFEYLSH----RNHPSLSAYFDEGENLTPETVDKCPIPFFVYS- 337
                      + +  +           +   + A     E       D  P+  +    
Sbjct: 281 RDVMVRGTCKTDEAGRTIGLFGILMDVTDRVQIRAEMRRSEMRYRSLADALPLLVWTVDP 340

Query: 338 -HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA 396
             G   Y N  F              A  +  L                  ++       
Sbjct: 341 DSGEATYVNTRFEDYYGP------IGAARVQRLARNHPDDAPAMEAAWQAAQASGQGYDG 394

Query: 397 SARLHTIQWNRE-NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
             RL     +       M+  P   A          G   +  +    +  +E     L 
Sbjct: 395 QWRLQA--RDGSYRWHKMSITPIRNAGDPAGITEWIGTALDIDEIVSARLAVEDTSRLLG 452

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYP----VEDILRKPFTVFLEQNTPSVMNH 511
             LE    G    N    I   +    +L+G P       +    +T  +  +      +
Sbjct: 453 IALEGAEAGTFDWNLRTGITVLSPESVRLYGLPETGEPRALSPTEWTATIHPDDVVEAWN 512

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY--SLTMHDISEWKQEKN 569
            +   +    R   E         ++ L              Y       DI+E K  + 
Sbjct: 513 RIHHAVDSRSRFIAEYRV-----GQRWLYTSGRTLYEGDGRPYRMLGLHLDITERKAAEA 567

Query: 570 KLSHAKK-------IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
            L  A          AE+ S+ KS+FLA +SHEIRTPL  I+G+++++ ++R     + R
Sbjct: 568 ALRAATAEARAATVEAERASAAKSEFLAAMSHEIRTPLNGILGYADLLLDRRDHDPEDQR 627

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                  I  SG  +L +VND+LD+SKIE+G++ L   P +L + + + +++++  A + 
Sbjct: 628 R---LELIRVSGESLLTVVNDVLDVSKIEAGQLELDPLPFALGKLIEDTVAIMRGTALKS 684

Query: 683 RILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN------- 734
            + +      ++P  ++ D   ++Q+  N+L+NA+ FTP+G  ++++  +  +       
Sbjct: 685 ALTVEARIDPDLPASVVGDANRLRQVLFNLLNNAVKFTPAGS-VVLTARYEGSVPGADGG 743

Query: 735 --EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
             E +   + DTG+G+   +  +  KPF Q+  S   R  G+GLGL +   +V    G  
Sbjct: 744 TAEALRFEISDTGIGIAPSQRHRLFKPFSQVDGSISRRFGGSGLGLAICHRLVTMMGGAI 803

Query: 793 YIFSTPAKGTLIEIIFPLYDTSHP 816
            + S    G+       L   + P
Sbjct: 804 GVESREGAGSTFWFTLALPRATTP 827


>gi|223937383|ref|ZP_03629288.1| PAS/PAC sensor hybrid histidine kinase [bacterium Ellin514]
 gi|223893934|gb|EEF60390.1| PAS/PAC sensor hybrid histidine kinase [bacterium Ellin514]
          Length = 1054

 Score =  328 bits (842), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 92/767 (11%), Positives = 218/767 (28%), Gaps = 57/767 (7%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144
           F       G L  +++   +        +IG            +        L   +   
Sbjct: 168 FIVRWKPDGTLTFVNQAYSRFFNQSKEGLIGKSFYPFIPEEDREMIRQKVRSL-TPDHPV 226

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
              T   I  T        +   ++ ++      +  G         +     +R ++ +
Sbjct: 227 ASDTHRAILPTGQVFWQQWSDRGLFDKDGNLVELQSVG--RDITARIETEEELRRSEENY 284

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPP--PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
             L E  +        +                   ++           + + T +    
Sbjct: 285 RTLVEQSQDLIWAIDLQARFTFLNQAAYKTLGYRPEELLGKPFTEFVPPEHVPTYQAAFE 344

Query: 263 ---TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR----NHPSLSAYF 315
               + + +L  +      +            ++++                        
Sbjct: 345 ENIRTGKDTLDYESFLVRKDGTIVALSANATVIRDSQGNPVGITGISKDISERIRAEQAL 404

Query: 316 DEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
            + E      V       + ++     ++YA P    L  Y   +  +    ++  L   
Sbjct: 405 KDSEKRYELAVSGSAAGLWDWNILTDEIYYA-PRLRELLGYSQNEFPDRLSSVNEKLHPD 463

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
                 A     L R   T      RL T   +                +  +     G 
Sbjct: 464 DYERVWAAIREHLERR--TTYNIEFRLLTKTGD---YHWFLGRGQALWEESGKPYRMAGS 518

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI--INREGIILSTNRAVSKLFGYPVED 491
             +  + +  ++ +     +   +     +   +  +  E  +L  + A  +++G   E 
Sbjct: 519 ISDITERKYTEQALRESEERFRQLANTMDEVFWMNSLLPE-RVLYVSPAFFRIWGVSPEA 577

Query: 492 ILRKPFTVF--LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
           + + P      +       +              T          +     +     K+ 
Sbjct: 578 LYQNPRLWLESIIPGDRQRVRDLYDNFFKNKAVPTYSAEYRIRRSDGSQRWISDTGSKIK 637

Query: 550 FSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESS--HKSDFLARVSHEIRTPLTAI 603
                         D++E K  +   +  +   ++             ++H+    LT I
Sbjct: 638 NERGEAYRVCGIARDVTERKLAEENHAAWEAKLQQSQKMDAIGRLAGGIAHDFNNILTVI 697

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
            G +  +  Q      +    E+   I++S     D+V  +L  S+    +  +  +P+ 
Sbjct: 698 SGNA-RMARQDLPAGHS--LQEHLTEIEKSSERATDLVRQILAFSR----QQEMERKPLY 750

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
           L   V +A+  ++       I IR+++ +++  I A+   V Q+ +N+ +NA H   + G
Sbjct: 751 LAPVVEDAVKFLRSTLPA-SIEIRSNYESHLLPISANATQVNQVIMNLGTNASHAMNNNG 809

Query: 724 QIIISTT--------------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
            + +                       V L ++D G G+    L     PF    +    
Sbjct: 810 LLEVRLDMVTVDANTAGTVPDLHQGRYVRLSMQDAGSGIDTSILPHIFDPFFTTKSP--- 866

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
            G+GTGLGL +   ++ ++ G   + +   KG+   + FP  +   P
Sbjct: 867 -GQGTGLGLSVVHGIMKSHGGAVTVETEVGKGSAFNLFFPALEVEIP 912



 Score =  152 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 52/520 (10%), Positives = 144/520 (27%), Gaps = 32/520 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMI-GMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144
            W I+  G    I+  + + +     + + G           +    +  D  K   +  
Sbjct: 43  IWQINPAGETLYINPAMLRMLELEKPEDLAGRTHHSFFTPESLVLMANEHDTRKVGTSSN 102

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            +  L    G    +P+ +   P+ + +         G    N          ++ ++ F
Sbjct: 103 YEAELLSRNGR--KLPVHVCGSPVLNPDGTLQSL--IGTFLDNTARKQAEESARKSEELF 158

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS----SLTEYYAHKDDVLKTEKYP 260
             + E +       K    +            ++K      S   +   +D  +  +K  
Sbjct: 159 RAIVEDQNEFIVRWKPDGTLTFVNQAYSRFFNQSKEGLIGKSFYPFIPEEDREMIRQKVR 218

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
            LT +     +           + ++     L +      E  S     +     +E   
Sbjct: 219 SLTPDHPVASDTHRAILPTGQVFWQQWSDRGLFDKDGNLVELQSVGRDITARIETEEELR 278

Query: 321 LTPE----TVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
            + E     V++     + +       + N +      Y+  + +               
Sbjct: 279 RSEENYRTLVEQSQDLIWAIDLQARFTFLNQAAYKTLGYRPEELLGKP------FTEFVP 332

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
            ++          + RT          +       +A++       +     +   GI  
Sbjct: 333 PEHVPTYQAAFEENIRTGKDTLDYESFLVRKDGTIVALSANATVIRDSQGNPVGITGISK 392

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGI----AIINREGIILSTNRAVSKLFGYPVED 491
           +  +    ++ ++    +    +  ++ G+     + +     +     + +L GY   +
Sbjct: 393 DISERIRAEQALKDSEKRYELAVSGSAAGLWDWNILTDE----IYYAPRLRELLGYSQNE 448

Query: 492 ILRK--PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
              +       L  +    +   + E L       +E   L  T +      R       
Sbjct: 449 FPDRLSSVNEKLHPDDYERVWAAIREHLERRTTYNIEFRLLTKTGDYHWFLGRGQALWEE 508

Query: 550 FSSCY--SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
               Y  + ++ DI+E K  +  L  +++   + ++   +
Sbjct: 509 SGKPYRMAGSISDITERKYTEQALRESEERFRQLANTMDE 548



 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 46/401 (11%), Positives = 110/401 (27%), Gaps = 21/401 (5%)

Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP----PPHLRMKNKVSSLTEYYAH 249
               +  D+++  L E             +               + ++        +  
Sbjct: 22  EQSSQARDQQYRLLAENTVVGIWQINPAGETLYINPAMLRMLELEKPEDLAGRTHHSFFT 81

Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
            + ++            +S   + +  + N  +         + N        +      
Sbjct: 82  PESLVLMANEHDTRKVGTSSNYEAELLSRNGRKLPVHVCGSPVLNPDGTLQSLIGTFLDN 141

Query: 310 SLSAYFDEGENLTPETVDKCPIPF--FVYS---HGNLFYANPSFLLLTKYKSVDDIEIAG 364
           +     +E    + E           F+      G L + N ++           I  + 
Sbjct: 142 TARKQAEESARKSEELFRAIVEDQNEFIVRWKPDGTLTFVNQAYSRFFNQSKEGLIGKSF 201

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
                   P + + +        RS       ++  H             +      ++ 
Sbjct: 202 -------YPFIPEEDREMIRQKVRSLTPDHPVASDTHRAILPTGQVFWQQWSDRGLFDKD 254

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
              +    +  +       + ++        +++E + D I  I+ +      N+A  K 
Sbjct: 255 GNLVELQSVGRDITARIETEEELRRSEENYRTLVEQSQDLIWAIDLQARFTFLNQAAYKT 314

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
            GY  E++L KPFT F+             E +      TL+  +    K+  +++L   
Sbjct: 315 LGYRPEELLGKPFTEFVPPEHVPTYQAAFEENIRTGKD-TLDYESFLVRKDGTIVALSAN 373

Query: 545 IKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKE 581
              +  S       +    DISE  + +  L  ++K  E  
Sbjct: 374 ATVIRDSQGNPVGITGISKDISERIRAEQALKDSEKRYELA 414



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/153 (15%), Positives = 51/153 (33%), Gaps = 8/153 (5%)

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP-VEDILRKPFTVF 500
             ++  +    Q   + E T  GI  IN  G  L  N A+ ++      ED+  +    F
Sbjct: 20  RTEQSSQARDQQYRLLAENTVVGIWQINPAGETLYINPAMLRMLELEKPEDLAGRTHHSF 79

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSL 556
               +  +M +   +   +      E   L      + L + +    +            
Sbjct: 80  FTPESLVLMANE-HDTRKVGTSSNYEAELLSR--NGRKLPVHVCGSPVLNPDGTLQSLIG 136

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
           T  D +  KQ +     ++++       +++F+
Sbjct: 137 TFLDNTARKQAEESARKSEELFRAIVEDQNEFI 169


>gi|149178901|ref|ZP_01857479.1| sensory box sensor histidine kinase [Planctomyces maris DSM 8797]
 gi|148842240|gb|EDL56625.1| sensory box sensor histidine kinase [Planctomyces maris DSM 8797]
          Length = 592

 Score =  328 bits (842), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 80/371 (21%), Positives = 159/371 (42%), Gaps = 21/371 (5%)

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
           +     R+++    +L ++LE   +G+  IN    +L  N +  +L  +  ED   K   
Sbjct: 241 EMAERVRQLQASGDRLSTVLEGMVEGVIAINERQHVLFANESAGRLLFFSPEDAEGK--- 297

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM 558
              E      +   +TE+L     Q +E     +   +++L +              + +
Sbjct: 298 ALFESVRNHQLQKSVTEVLKTLEPQRMEVELEST--SDRILGVTTTPLPGTPCPGLVIVL 355

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            D++E ++ +              S + +F+A VSHE++TPL++I  ++E +        
Sbjct: 356 FDMTELRRLE--------------SLRQEFVANVSHELKTPLSSIKAYTETLIRGAMD-- 399

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
                  +   I+   + +  ++ DL+ ++ IESG        + L   V   +   Q  
Sbjct: 400 DPEINKTFLLRIEEQADRLHQLILDLISLASIESGNQVFDIINIELRPFVESCLVDQQKV 459

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738
           A  K+I +    +    ++ AD   + QI  N+++NAI +TP  G+I I         V+
Sbjct: 460 AESKQIELLIEESEPGIKVKADEEGLHQILGNLINNAIKYTPDQGRITIRWQREEGNMVL 519

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           L+V+DTG+G+      +  + F ++  ++     GTGLGL + K +V +  G   + S  
Sbjct: 520 LQVQDTGIGIAEKYQARLFERFFRVDKARSRELGGTGLGLSIVKHLVQSFNGTIGVTSKV 579

Query: 799 AKGTLIEIIFP 809
            +G+   +  P
Sbjct: 580 GEGSTFSVRLP 590


>gi|120556580|ref|YP_960931.1| multi-sensor hybrid histidine kinase [Marinobacter aquaeolei VT8]
 gi|120326429|gb|ABM20744.1| multi-sensor hybrid histidine kinase [Marinobacter aquaeolei VT8]
          Length = 966

 Score =  328 bits (842), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 107/401 (26%), Positives = 196/401 (48%), Gaps = 10/401 (2%)

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
           T +    A                   R   R+ +    +L +I++A  DGI  I+  GI
Sbjct: 232 TILALTIAFVTVTLSLLASGVNAVARYRALMRRSQETASELRTIVDAAVDGIIKISDRGI 291

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLG 531
           +LS N +  ++FGY  ++++ K   + +        + YL   L    R+ +   +    
Sbjct: 292 VLSFNESAERIFGYRADEVVGKNINMLMPNPHRDAHDGYLKNYLRTGKRKIIGSGREVWA 351

Query: 532 STKEEKLLSLRIIIK--KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
             K+   + +R+ I   +L   S +   + DISE  + +  L  AK+ AE+ ++ KS FL
Sbjct: 352 LHKDGHQIPVRLGIGESRLGGISTFVGFITDISERHRMETDLRRAKEEAEQAAAAKSAFL 411

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
           A +SHEIRTP+ AIIGF++++ +       +     +   +  S   +L+++ND+LD +K
Sbjct: 412 ANMSHEIRTPMNAIIGFTDLVLDTPL----DETQARHLGVVKTSARSLLNLLNDILDTAK 467

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709
           ++ G   L     +L     + I+   L A  K + +   +         D   ++Q+ L
Sbjct: 468 LDGGHTELELHDFNLRRLCDQVIATQSLNAARKGLYLTLDYQAG-EYYQGDPLRIQQVVL 526

Query: 710 NILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
           N+LSNA+ FT +GG + +     S  +V++RV DTG+G++   +++  +PF Q  +S   
Sbjct: 527 NLLSNAVKFTQTGG-VTLKVQEPSVHKVVIRVEDTGIGISADRIDRIFEPFTQADSSMTR 585

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           R  GTGLG  +A+ +V+   G   + S+P +G++ ++  PL
Sbjct: 586 RFGGTGLGTTIARQLVELMGGTISVTSSPGEGSVFQVELPL 626



 Score = 43.1 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 34/369 (9%), Positives = 91/369 (24%), Gaps = 18/369 (4%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWY-- 144
            I   G +   +E   +  G  A +++G  +  +    H D  + ++ + L+        
Sbjct: 285 KISDRGIVLSFNESAERIFGYRADEVVGKNINMLMPNPHRDAHDGYLKNYLRTGKRKIIG 344

Query: 145 --GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
              +      +G  + V + +    +       S F GF  +      +      +R  +
Sbjct: 345 SGREVWALHKDGHQIPVRLGIGESRL----GGISTFVGF--ITDISERHRMETDLRRAKE 398

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY----YAHKDDVLKTEK 258
           +       K    +    +              + +     T+                 
Sbjct: 399 EAEQAAAAKSAFLANMSHEIRTPMNAIIGFTDLVLDTPLDETQARHLGVVKTSARSLLNL 458

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
              +           +    + N           Q+ +          ++ +   Y  + 
Sbjct: 459 LNDILDTAKLDGGHTELELHDFNLRRLCDQVIATQSLNAARKGLYLTLDYQAGEYYQGDP 518

Query: 319 ENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
             +    ++           G +        +      V+D     G+S           
Sbjct: 519 LRIQQVVLNLLSNAVKFTQTGGVTLKVQEPSVHKVVIRVEDTG--IGISADRIDRIFEPF 576

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
                 M  R   T +  +     ++       ++T  P E +    E     G+  ++ 
Sbjct: 577 TQADSSMTRRFGGTGLGTTIARQLVELMGGTI-SVTSSPGEGSVFQVELPLPTGLAVDED 635

Query: 439 DTRINKRKM 447
                +  +
Sbjct: 636 TLADQEVAL 644


>gi|15615718|ref|NP_244022.1| two-component sensor histidine kinase involved in phosphate
           regulation [Bacillus halodurans C-125]
 gi|10175778|dbj|BAB06875.1| two-component sensor histidine kinase involved in phosphate
           regulation [Bacillus halodurans C-125]
          Length = 589

 Score =  328 bits (842), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 103/562 (18%), Positives = 222/562 (39%), Gaps = 38/562 (6%)

Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
                +   +   E     +E    ++            +  ++ +  E  +H + P  +
Sbjct: 50  AASMVENEAVLFNEVQTLTEEISQKLDARVTIILADGTVVGESAADPAEMENHADRPEFT 109

Query: 313 AYFDEGENLTPETVDKC---PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
              +     +     +     +P    ++  + Y                  +   L  +
Sbjct: 110 ELEEGIVRYSTTVETELLFYAVPIQNEANETIGYV------RLGLPIEAVNSVNRTLWAI 163

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
           L          I  V    +++      +    +               E  ++  +   
Sbjct: 164 LIVSFTIAFLVIVSVTYRIANQMIRPIES-ATVVANKLAEGDYQARTSEESRDEVGQLNR 222

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
              +   +++    + +++    +L +++E    G+ +IN  G I   N+    +F    
Sbjct: 223 SINVLAYNLEQLTKRHQVQ--KERLETLIENMGSGLILINTRGDISLINKTCHDIFQEDT 280

Query: 490 EDILRKPFTVFLEQ-NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
           +  L + +   ++      ++            +  L         +     +   +++ 
Sbjct: 281 DLWLHQLYHDVIKHKEIIKIVQDIFLTEKRQRRQVKLPIHLEYRHFDVHGAPI---VREN 337

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                 +L  HDI+E K+ +                + DF+A VSHE++TP+T+I GF+E
Sbjct: 338 GKLKGIALVFHDITELKKLEQV--------------RKDFVANVSHELKTPVTSIKGFTE 383

Query: 609 VIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
            + +   G + + +  + + + I +    +  +++DLL++SKIE     L+++  +L   
Sbjct: 384 TLLD---GAMHDEQLRDQFLHIIWKESERLQSLIHDLLELSKIEQNYFQLNWQQTNLFAV 440

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727
           VSE ++L++  A EK I I  S A     +  D   +KQIA+N+++NAI +T +GG+I +
Sbjct: 441 VSEVMTLLKGKAEEKGIDISLS-AEGSFDLEGDPERLKQIAINLVNNAITYTSNGGRIDL 499

Query: 728 STTHTSNEEVI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
                 + +V+   V DTG+G+   E+ +  + F ++  ++     GTGLGL + K +V+
Sbjct: 500 --ALKDHGDVVEFEVNDTGIGIRESEIPRIFERFYRVDRARSRNSGGTGLGLAIVKHLVE 557

Query: 787 ANMGKFYIFSTPAKGTLIEIIF 808
           A+ GK  + S   KGT   I F
Sbjct: 558 AHQGKILVESEFGKGTTFTIQF 579


>gi|89096799|ref|ZP_01169691.1| two-component sensor histidine kinase [Bacillus sp. NRRL B-14911]
 gi|89088814|gb|EAR67923.1| two-component sensor histidine kinase [Bacillus sp. NRRL B-14911]
          Length = 609

 Score =  328 bits (842), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 95/393 (24%), Positives = 176/393 (44%), Gaps = 27/393 (6%)

Query: 426 ENMPQNGIEPEDVDTRINKRKM--EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           + + Q  I    +  ++ + +   E E  +L S+L   +DG+   +R G ++  N   +K
Sbjct: 237 DEIGQLAITFNSLTKKLQEAQATTEGERRKLSSVLSYMTDGVIATDRRGRVILINEPAAK 296

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +   P E +L  P    L           L E  S+ L  + E                +
Sbjct: 297 MLNVPRETVLSSPIVNLLGLEEDYTFEELLAERESVILDYSTETTPYVLRAN-----FSV 351

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
           I K+  F +     +HDI+E ++   +              + +F+A VSHE+RTPLT +
Sbjct: 352 IQKETGFVNGLITVLHDITEQEKIDLE--------------RREFVANVSHELRTPLTTM 397

Query: 604 IGFSEVIKNQRFGPLGNPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
             + E +     G + +     ++ N        ++ +VNDLL +SK++S    +  E V
Sbjct: 398 RSYLEALAE---GAMHDEDIAPQFLNVTRTETERMIRMVNDLLQLSKLDSKDYRMKKEWV 454

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
           +  +  +  I        E+ +  + +   +   +  D   + Q+  NI+SNA+ ++P G
Sbjct: 455 NFVDFFNRIIDRFDFS-KEQNVTFQRNLPEHAAFVEIDEDKLTQVVDNIISNALKYSPEG 513

Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
           GQ+  +      E++++R+ D GVG+    L+K  + F ++  ++  +  GTGLGL +AK
Sbjct: 514 GQVSFNI-VEQEEQLLIRISDQGVGIPKDNLDKVFERFYRVDKARTRKLGGTGLGLAIAK 572

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            +V+A+ GK +  ST  KGT I    P   +  
Sbjct: 573 EVVEAHDGKIWAESTEGKGTTISFTLPFVRSDE 605


>gi|303245459|ref|ZP_07331743.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           fructosovorans JJ]
 gi|302493308|gb|EFL53170.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           fructosovorans JJ]
          Length = 576

 Score =  328 bits (842), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 113/578 (19%), Positives = 219/578 (37%), Gaps = 55/578 (9%)

Query: 284 TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY 343
             +Q      +++      L    H    +Y+ E +    E            +   +F 
Sbjct: 4   PGRQTADAADSDAGRRDRLLGFGEHSVSKSYYPELKRRLEELERF--RSLLEQTGEAIFL 61

Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403
            +     +        + +      LL  P  +         L+       AA      +
Sbjct: 62  VDGRTGRIADTAGAAGVMLRQEREALLGLPFAALLPMEAVEHLHGLFSGDFAAGRLETVL 121

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
                           +  +  +      +  +  + + ++  +     +   I+E  ++
Sbjct: 122 TRPGGKGTTPAVEMTFRMAKGEDGPIAVIVARDVSERKKSELALRRAEEKYRGIVENAAE 181

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
           GI   + +G ++S N AV+ + GY     + +     ++Q      +            Q
Sbjct: 182 GIFQSSLDGRLISANPAVATILGYASPREMMRRVKSIIDQTVAREDDRQRIRAELERYDQ 241

Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHA----- 574
                    TK   L+   I  +++  ++     +  ++ D++  KQ +  L        
Sbjct: 242 VKNLEVQLVTKSGDLIWGLINARRIRDAAGEAERFDGSLQDVTIRKQAEQTLLRYHDELE 301

Query: 575 ---------------------------KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
                                      ++ A+  +  KS+FL+ VSHEIRTPLT+++GF+
Sbjct: 302 RRVAERTAELTRANERLTHEVTIRKRAEEAADAANRAKSEFLSMVSHEIRTPLTSVMGFA 361

Query: 608 EVIKNQRFGPL------GNPRYI-------EYANYIDRSGNLVLDIVNDLLDISKIESGK 654
            VI  +R   L       +PR         E    I   G  +  ++ND+LD++K+E+GK
Sbjct: 362 -VIIEKRLDQLFNRLLGDDPRQRRQAEQIMENLGIIVSEGERLKHLINDVLDLAKLEAGK 420

Query: 655 MNLHFEPVSLDEAVSEAISLVQ-LYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713
           M    E V   E V   +S  + L A   R+ ++TS    +P ++ D   + Q+ +N++S
Sbjct: 421 MAFKHERVDPAEVVRHVMSASEGLLAATPRVALKTSIQGRLPEVIGDRDRLIQVLVNLVS 480

Query: 714 NAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
           NA+ FT  G  +      T++  V++ V DTG+G+   E  K  + F QI  +   + +G
Sbjct: 481 NALKFTEQGS-VTCR-ARTADGYVVIDVADTGIGIPEAEQHKVFEKFNQIGATLTNKPKG 538

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
           TGLGL + K +V+++ G+    S    G+      P+ 
Sbjct: 539 TGLGLAICKHIVESHGGRISYVSRFGSGSTFTFALPIA 576



 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/208 (9%), Positives = 54/208 (25%), Gaps = 11/208 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN--HIGDLLKRQNTW 143
            +     G L   +  +   +G  + + +  R+  + D      ++   I   L+R +  
Sbjct: 183 IFQSSLDGRLISANPAVATILGYASPREMMRRVKSIIDQTVAREDDRQRIRAELERYDQV 242

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR---- 199
                   +  +   +   + A  I     E   F G   +    +         R    
Sbjct: 243 KNLEVQL-VTKSGDLIWGLINARRIRDAAGEAERFDG--SLQDVTIRKQAEQTLLRYHDE 299

Query: 200 -LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP-PHLRMKNKVSSLTEYYAHKDDVLKTE 257
              +      E+ + +  +  E       +       R K++  S+  +           
Sbjct: 300 LERRVAERTAELTRANERLTHEVTIRKRAEEAADAANRAKSEFLSMVSHEIRTPLTSVMG 359

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTK 285
              ++      L  +         +  +
Sbjct: 360 FAVIIEKRLDQLFNRLLGDDPRQRRQAE 387


>gi|156743247|ref|YP_001433376.1| multi-sensor hybrid histidine kinase [Roseiflexus castenholzii DSM
           13941]
 gi|156234575|gb|ABU59358.1| multi-sensor hybrid histidine kinase [Roseiflexus castenholzii DSM
           13941]
          Length = 1003

 Score =  328 bits (842), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 108/490 (22%), Positives = 201/490 (41%), Gaps = 39/490 (7%)

Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLS-----DNNAIKPVMLYRSDRTCIAASARLH 401
           +   +  Y  +DD+    G+   +D P+         +    ++L        A    L 
Sbjct: 240 ADDHIAGYAQIDDLRGGKGIVLRIDMPRDILQYGLSASRYYLLILLLVTGAFAAVILTLI 299

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV-----------DTRINKRKMEIE 450
             +         T +         +         E             D   + +++   
Sbjct: 300 ERRILARIISLSTQVAQIGRVGNHQERVALSGNDEISQLGDAINRMLNDLAQSAQRLIQS 359

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRKPFTVFLEQNTPSVM 509
             +   ++E + + I + + E  I+  N A ++L GY     ++  P   FL     +  
Sbjct: 360 EARYRQLVEISPEAIIVHDNE-QIIYINPAGARLLGYADSSRLIGSPAAPFLPTALHNKT 418

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN 569
           +               E+    S  +   L L         +S + +  H+I+E KQ + 
Sbjct: 419 DD---------GAIRYERDLTLSNGQTVTLDLIAAPFVADGASVWQVVAHNITERKQTEE 469

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
            L +A+  AE+ S  KS FLA +SHE+RTPLT IIG+++ +           R  +    
Sbjct: 470 ALRNARDWAEEASRAKSRFLANMSHELRTPLTTIIGYAD-LITLATQQGEFNRIRDDITR 528

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           +  +G  +L I+NDLLD+SKIE+G+M +H  P S+     E ++ + L A  +R  +  +
Sbjct: 529 VRNAGKHLLAIINDLLDLSKIEAGRMEIHIAPFSVPALAEEVVASMDLLAQTRRNTLILT 588

Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS----------NEEVIL 739
               +  + +D   V+Q+  N++ NA  FT  G  + ++   ++          +  ++ 
Sbjct: 589 IDPTVGVMHSDDVRVRQVLYNLVHNACKFTEDG-VVTVTIARSALESTVHVNGHSARIVF 647

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            + DTG+GMT+ ++ +  + F Q   +   +  GTGLGL L++ +V    G   + S P 
Sbjct: 648 TISDTGIGMTDDQMARLFQEFTQADPTTMRKYGGTGLGLALSRHLVRMLGGDITVTSKPG 707

Query: 800 KGTLIEIIFP 809
            GT   +  P
Sbjct: 708 VGTTFVVTLP 717



 Score = 54.6 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 22/171 (12%), Positives = 49/171 (28%), Gaps = 6/171 (3%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
              +    + E    + V+  P    V+ +  + Y NP+   L  Y     +  +     
Sbjct: 350 AQSAQRLIQSEARYRQLVEISPEAIIVHDNEQIIYINPAGARLLGYADSSRLIGSPAAPF 409

Query: 369 LL--DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
           L      K  D        L  S+   +           +  +   +      +  Q  E
Sbjct: 410 LPTALHNKTDDGAIRYERDLTLSNGQTVTLDLIAAPFVADGASVWQVVAHNITERKQTEE 469

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT---SDGIAIINREGII 474
            +       E+     ++  +     +L + L      +D I +  ++G  
Sbjct: 470 ALRNARDWAEEASRAKSRF-LANMSHELRTPLTTIIGYADLITLATQQGEF 519


>gi|78357969|ref|YP_389418.1| histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans
           str. G20]
 gi|78220374|gb|ABB39723.1| histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans
           str. G20]
          Length = 606

 Score =  328 bits (842), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 88/393 (22%), Positives = 168/393 (42%), Gaps = 20/393 (5%)

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN-RAVSK 483
            E      +E E +  R  ++++  E   L  IL+A  D + + +R+G ++ +N +    
Sbjct: 71  GEGADSRSLEAEILRLRQREKELLHERQMLKDILKAIPDMLTVHDRDGNVMFSNCKPNED 130

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
            + +                   +  + Y+ ++     ++ +E        + K     I
Sbjct: 131 CWQHHGGTKHGLRCYQCHFHGDRNCEDCYIPDVFDSGEQRVVEM----YNPDMKSFR-SI 185

Query: 544 IIKKLPFSSCYSLTM----HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
            +  +         +     D++  +  + +L  AK+ AE     KS+FLA +SHEIRTP
Sbjct: 186 TVFPVRDGQGDVTMVAEYVRDVTATRNLERELRVAKEAAEAADRAKSEFLASMSHEIRTP 245

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           +  ++G    + +       +    EY   +  S   +L ++ND+LD SKIE+G + L  
Sbjct: 246 MNGVLG----MLDLAMTTSLDEEQREYLEAVQNSAEALLSLINDILDFSKIEAGMVELDQ 301

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
           +   L + +S   ++    A E+ +    + + ++P  +  D   ++QI +N+L NA  F
Sbjct: 302 QVFRLSKRLSSLHTMFVHRAAERNLEFAINISPDVPDGLSGDPLRLRQIVVNLLDNAFKF 361

Query: 719 TPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           T  G Q+++S            +   V+DTG G+     E+    F Q   S   R +G+
Sbjct: 362 TDQG-QVVLSVEVLERGAENVLLQFSVQDTGPGILERHQERIFDSFAQADASFTRRHQGS 420

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           GLGL + K +     G   + STP +G+     
Sbjct: 421 GLGLAICKRLTGLMGGDIKVRSTPGEGSTFVFS 453


>gi|163803362|ref|ZP_02197238.1| sensor histidine kinase FexB [Vibrio sp. AND4]
 gi|159172824|gb|EDP57666.1| sensor histidine kinase FexB [Vibrio sp. AND4]
          Length = 788

 Score =  328 bits (842), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 89/406 (21%), Positives = 176/406 (43%), Gaps = 19/406 (4%)

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
               +         +E E       + ++      L S ++A+ D I   N +G+    N
Sbjct: 122 RIKAEEAREEAMQDLENEVFQRERTQLELAERTALLRSFIDASPDLIYYRNADGVFSGCN 181

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
           RA+  L G     ++         +     +     ++ + +   T E+        +  
Sbjct: 182 RAMEVLTGRKEHQLVGLSPWDVYSKEVAKHIVDTDQKVFADNQAITYEQWLEYPDGRKHY 241

Query: 539 LSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
             LR +                 DI+E K+ +  L       EK S  K+ F++ +SHE+
Sbjct: 242 FELRKVPFYSKDGRHLGLVGFGRDITERKRHEESL-------EKASRDKTTFISTISHEL 294

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTPL  I+G S ++ + +          +Y   I+ S   + +I ND++D+ K +  K+ 
Sbjct: 295 RTPLNGIVGLSRMLLDSQL----TQEQRKYMQTINVSAITLGNIFNDIIDMDKFDRRKLE 350

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNA 715
           L   P++ ++ V+E  S+  L A +K +       +++P+ I  D   ++Q+  N++SNA
Sbjct: 351 LLPTPLNFEDFVAEIESISALMAEQKGLRFDLERLSSLPKAIEVDATRLRQVIWNLVSNA 410

Query: 716 IHFTPSGGQI-IISTTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGE 772
           + FT  GG +  +S     +   +I+ V DTG+G+ + EL+K    + Q+ + +      
Sbjct: 411 MKFTKEGGVVMTVSADLEDDFATIIMEVEDTGIGIPDEELDKIFAMYYQVKSGKDNLHAV 470

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF--PLYDTSHP 816
           GTG+GL ++K +++   G   + S    G+   +    P+ + + P
Sbjct: 471 GTGIGLAVSKQLINMMDGDITVASEEGFGSTFTVSIHVPIVELAEP 516



 Score = 41.9 bits (97), Expect = 0.39,   Method: Composition-based stats.
 Identities = 16/129 (12%), Positives = 35/129 (27%), Gaps = 5/129 (3%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID-PNNHIGDLLKRQNTWYGKTT 148
           +A G     +  +    G    +++G+   DV          +    +         +  
Sbjct: 172 NADGVFSGCNRAMEVLTGRKEHQLVGLSPWDVYSKEVAKHIVDTDQKVFADNQAITYEQW 231

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           L   +G       +L  +P YS++    G  GFG               ++  +  +   
Sbjct: 232 LEYPDGR--KHYFELRKVPFYSKDGRHLGLVGFG--RDITERKRHEESLEKASRDKTTFI 287

Query: 209 EIKKGHSSV 217
                    
Sbjct: 288 STISHELRT 296


>gi|90421906|ref|YP_530276.1| PAS/PAC sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris BisB18]
 gi|90103920|gb|ABD85957.1| PAS/PAC sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris BisB18]
          Length = 843

 Score =  328 bits (842), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 126/699 (18%), Positives = 242/699 (34%), Gaps = 43/699 (6%)

Query: 130 NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN----REFSGFRGFGIVH 185
           ++ +  LL+    +           T+    I+     +  +     RE SG R      
Sbjct: 170 DHAVDALLESGEGFQLNLV------TSTGRSIEAVGRAVGGQAIVRMRELSGLR-----R 218

Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE 245
                       +   +                ++  ++    +          V+   E
Sbjct: 219 ELAEMTQRHKTLQEETEMLRDFAAAAPWPIWTRRDAGELNFANAAYARATEAGSVAEAIE 278

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
                 +           ++ ++   +         +                +   +  
Sbjct: 279 RNLELLESNDRTALSRALNDNANFSARLPIVVRGERRIYDVHAMKV---RGGSAGAAIDA 335

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAG 364
               +L A           T+D+      V+     L + N S+  L             
Sbjct: 336 SEAYALGAALVRMAEAHRRTLDQLSSGVAVFDEQHRLAFYNDSYRRLWD----------- 384

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS---ARLHTIQWNRENSLAMTFIPFEKA 421
            L          D++ +  +   R             RLH      + +  + ++P  +A
Sbjct: 385 -LDRAFLDSNPDDSSVLDRLRAARKLPEQPNFREWKMRLHEAYRAVDPAKDVWYLPDGRA 443

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL----CSILEATSDGIAIINREGIILST 477
                     G      D      ++      L       L+  ++ +A+    G     
Sbjct: 444 VSIVTTPNPEGGVTYLFDDVTESLELARRFDGLINVQRETLDNLAEAVAVFGSNGCARLF 503

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH-YLTEILSLDLRQTLEKITLGSTKEE 536
           N   ++++    E +  +P    +      + +   + + L   +     +I +    E 
Sbjct: 504 NPPFARMWNLSPEALQLQPHIETVVDWCRPLFDDPAIWQTLRGAITGIENRIAIPLKLER 563

Query: 537 KLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
           +  S+   +          LT  DI++ +  +  L    +  E     K DF+  VS+E+
Sbjct: 564 RDGSVLNCMTMPLPDGATMLTFQDITDTENVERALRERNEALETADQMKVDFVHHVSYEL 623

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           R+PLT IIGF+  + +   GPL   +  EY +YI  S N +L I+N++LD++ I++G M 
Sbjct: 624 RSPLTTIIGFAHFLSDPSTGPLT-EKQEEYLSYITTSTNALLAIINNILDLATIDAGAMT 682

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716
           L+   V + +A+++AI  +Q       I++  + A ++   +AD R V Q+  N+L+NA+
Sbjct: 683 LNLGQVDIRKAIADAIEGIQDRLARDHIVLEVNAAPDVGHFIADERRVVQVLYNLLANAV 742

Query: 717 HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
            F+P    I +S   T    V+  V DTG G+     EK    F     S   R  G GL
Sbjct: 743 GFSPQHAAITLSAKRTEQ-TVVFTVTDTGPGIPPDVKEKVFDWFE--SRSNGSRHRGAGL 799

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
           GL L ++ V+ + G   I S   KGT +   FP+  +  
Sbjct: 800 GLSLVRSFVELHGGNVRIDSVVGKGTTLTCSFPIDQSQQ 838


>gi|172039492|ref|YP_001805993.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
           51142]
 gi|171700946|gb|ACB53927.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
           51142]
          Length = 1195

 Score =  328 bits (842), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 97/372 (26%), Positives = 174/372 (46%), Gaps = 29/372 (7%)

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
           +  T+DGI   +     +  +    K+ GY       KP    L   + +V +  L +++
Sbjct: 583 VSGTNDGIWDWDLRNDTVYYSPVWMKILGYE-----NKPLPNLLSTWSDNVHSDDLEQVM 637

Query: 518 S------LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQE 567
                      +  E I     ++   L +    K +            T+ DI+E K  
Sbjct: 638 KDVQNHLQGNTKIYENIHRIRHRDGHYLWIETKGKCIQDQQGQPYRLVGTITDITEKKVA 697

Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
           +  L  AK+IAE  ++ KS+FLA +SHEIRTP+ AI+GF + + ++R   + + R   Y 
Sbjct: 698 QEALKKAKEIAEVANNAKSEFLANMSHEIRTPMNAILGFCD-LLDKR---ITDERSRHYL 753

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
             +   G ++L ++ND+LD+SKIESGK+ +  EP+ L   + E   +    A EK I + 
Sbjct: 754 ESVASGGKMLLSLINDILDLSKIESGKIEIIHEPIDLRGLIFEIKQMFVETAKEKNIELL 813

Query: 688 TSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSG-GQIIISTTHTSNEE--------V 737
            +  N +P ++  D   ++QI  N++ NA+ FT  G  +I + +    +++        +
Sbjct: 814 VNINNQVPDVIVFDEVRLRQILFNLVGNALKFTEKGYVKISVKSQLLPSDKNHHPSYCSL 873

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
            + + DTG+G+   + ++    F Q       +  GTGLGL +   + +   G   + S 
Sbjct: 874 EISIEDTGIGIALDQRKRVFDVFTQSEGQSNRKYGGTGLGLTITNRLTEMLKGIIDLESE 933

Query: 798 PAKGTLIEIIFP 809
             KG++  + FP
Sbjct: 934 LGKGSIFTVSFP 945


>gi|78187217|ref|YP_375260.1| PAS/PAC sensor signal transduction histidine kinase [Chlorobium
           luteolum DSM 273]
 gi|78167119|gb|ABB24217.1| PAS/PAC sensor signal transduction histidine kinase [Chlorobium
           luteolum DSM 273]
          Length = 896

 Score =  328 bits (842), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 123/750 (16%), Positives = 270/750 (36%), Gaps = 52/750 (6%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEG 154
           + + +      +      ++   +  +     ++      +   +      ++ +    G
Sbjct: 169 IVQCNSAAEAMMEVDRTVLLHRSIHSIHPPDVLEAQLCAFERQAKGELRVIESEVLTASG 228

Query: 155 TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK-RLDKKFSHLHEIKKG 213
             + V +  A + +  +          G         +     +    +  +   ++   
Sbjct: 229 KRIPVSVTAAQVVVNDKP------CLIGAFRDITESKEAEQAIRLANQQLQASEQQLMAA 282

Query: 214 HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE 273
           +  ++  +  + +          + ++ +  +     +  L      L  SE+  +   +
Sbjct: 283 NQQLQASEQQLMAANQ--QLQASEQQLMAANQQLQASEQQLMVANQQLQASEQQLMAANQ 340

Query: 274 DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS-----------------AYFD 316
                      K    G L N S      +      S+                    F 
Sbjct: 341 QLMASEQQLMAKLGVQGLLANISTYLMTPVGEVLDESIEHVLGLVGSFTKADRCFIFQFT 400

Query: 317 EGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
           +   +   T + C        HG    A   F    +     +      +S L    K+ 
Sbjct: 401 DDGLVVSNTYEWCAAGVAAEKHGLQQLAVDEFPWWMERIKRHEPIFIPDVSALPVEAKVE 460

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
             +  +  +          A      +  +  NS  +        +  P     + +   
Sbjct: 461 KEHLERQGIRSLVAVPVSTAGFSGGFLGLDWVNSSVLNLH----EDHIPLLQLASDLIFG 516

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRK 495
            ++   + +++     +  +I E+  D  A +N   G I   + ++S  FGY  ++IL +
Sbjct: 517 SLNREKSAQQIWEREAKYRAIFESIQDVYAEVNLATGTIEEISPSISS-FGYTRDEILHR 575

Query: 496 -PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC- 553
                ++       +   L ++         +      TK  + +++ + I  +      
Sbjct: 576 QSLDYYVNPEERDRLISALADM-----GSLRDFEAHFLTKSGEPITVSLAISLIKGVPDG 630

Query: 554 ---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
                 TM DISE K+ + ++       ++    K+DF++ VSHE+RTPL +I+GFS  +
Sbjct: 631 LMKIVGTMRDISERKKHECQI-------QENIRLKNDFISSVSHELRTPLFSILGFSSTL 683

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
             +  G L     +E+ + I      +  ++ D+L IS+I+SGK     +     + VS 
Sbjct: 684 LKE-SGSLDPATRLEFTSIIHDESVRLSSLIEDILTISRIDSGKAKYSRQIFDPVKPVSA 742

Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
            +++++  A EK I +     +   R++ D  S+KQ+ +N+L NA+ FTP GG++ +S +
Sbjct: 743 VVAILRRQAEEKGIELVEEKPDREHRVVFDQDSLKQVMMNLLGNALKFTPKGGRVKVSIS 802

Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
                 V + V DTG+G+   + EK    F +   S   + EGTGLGL + K +V+   G
Sbjct: 803 GAEE-MVSITVDDTGIGIAASDHEKIFDRFYRSVPS-AFQIEGTGLGLAIVKDIVEMQGG 860

Query: 791 KFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820
              + S   +G+   ++    + +   D +
Sbjct: 861 SIGVQSELDRGSQFTVLLKRAEDAADEDVV 890



 Score =  114 bits (286), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 32/283 (11%), Positives = 80/283 (28%), Gaps = 8/283 (2%)

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAG 364
           R+   L     E  +     VD   I  + Y   G+L   +     L   +         
Sbjct: 4   RDLERLDNENRELSSRMRAAVDGAGIGIWEYDIAGSLLVWDDWMYRLYGIEPD----RFS 59

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
           G           D+          +             +  + +    +      + ++ 
Sbjct: 60  GAYEAWVNGLHPDDMERAAREADEAMTGGKPFDTEFRVVHPSGD-VHHIKASAVVQYDEA 118

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI-ILSTNRAVSK 483
              +   GI  +  + R  + ++  +  QL ++ E   D + + + +   I+  N A   
Sbjct: 119 GVPLKMIGINYDITERRQLEDELAAKAAQLHALYEGIPDALLVADIDTKQIVQCNSAAEA 178

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +       +L +        +             +    + +E   L ++ +   +S+  
Sbjct: 179 MMEVDRTVLLHRSIHSIHPPDVLEAQLCAFER-QAKGELRVIESEVLTASGKRIPVSVTA 237

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
               +    C      DI+E K+ +  +  A +  +       
Sbjct: 238 AQVVVNDKPCLIGAFRDITESKEAEQAIRLANQQLQASEQQLM 280


>gi|91788333|ref|YP_549285.1| PAS/PAC sensor hybrid histidine kinase [Polaromonas sp. JS666]
 gi|91697558|gb|ABE44387.1| PAS/PAC sensor hybrid histidine kinase [Polaromonas sp. JS666]
          Length = 1049

 Score =  328 bits (842), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 103/579 (17%), Positives = 196/579 (33%), Gaps = 89/579 (15%)

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
           SA            ++  P   FV           N +   L  Y   + +        L
Sbjct: 191 SAEVAAVNRFLDSVIETIPDMIFVKDAADLRFVRFNRAGEELLGYSRDELVGKNDY--DL 248

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
               +     +    +L R     I        I    +    +        +     + 
Sbjct: 249 FPEAEADAFTSKDQEVLTRGMVLDIPEE----PIHTRNKGDRILHTKKIPIFDSKGRPLY 304

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQL----------------------------------- 454
             GI  +  + +  +  +     +L                                   
Sbjct: 305 LLGISRDVTEKKKLEDALRKRNEELSKSQEDLQWSNSELNKLRLALEARVNQRTQQLTAV 364

Query: 455 -----------CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF-LE 502
                         ++   D +  ++  G++   N     +FG+  ++ + KP     + 
Sbjct: 365 VEALRESEARTRLTIDTALDAVVAMDAHGLVREWNAQAETIFGWKRDEAIGKPLAGLVIP 424

Query: 503 QNTPSVMNHYLTEILSLDLRQTL--EKITLGSTKEEKLLSLRIIIKK--LPFSSCYSLTM 558
           +         L   L+ +    L          +E +   + + I    L     +S  +
Sbjct: 425 RQHREGHARGLERFLATNEGPILSQRLELTALHREGREFPVELSITPMLLQGEWTFSAFL 484

Query: 559 HDISEWKQEKN------------------KLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
            DI++ KQ +                   +L  A++ A+  +  KS FLA +SHEIRTP+
Sbjct: 485 RDITDRKQMEERTLNLNRELEQRVAQRTTELVAAREAADTANRAKSTFLATMSHEIRTPM 544

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
             + G  E++                   +  S   +L I++D+LD SKIE+GK+ +  E
Sbjct: 545 NGMFGMLELLGLTELDT----DQRATLAIVRESSQSLLCIIDDILDFSKIEAGKLTVRPE 600

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFT 719
             S+ + +    ++    A+ + +L++      I P ++ D   + QI  N++SNA+ FT
Sbjct: 601 VASIKDVIEHVRNMYAGNASGRGLLLKHGTDPQISPALMFDPLRLGQILNNLVSNALKFT 660

Query: 720 PSGGQIIISTTH----TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
             G  I I           ++V   V DTG+G++  + ++  +PF Q          GTG
Sbjct: 661 SRGS-IEIKAELIARTNGEDQVRFVVTDTGMGVSAEDQQRLFQPFTQGGGDTARWAGGTG 719

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLI--EIIFPLYD 812
           LGL + + +     G   + S   KGT +   +  P+ D
Sbjct: 720 LGLTICRRLAGMMNGTVEMVSELGKGTTMILTLSLPIAD 758



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/198 (14%), Positives = 64/198 (32%), Gaps = 11/198 (5%)

Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450
              I  + + H I  +R   L +        +   +         E +  R  +      
Sbjct: 143 GVEIYFNDQRHFITADRLQILNLLLS---TYDAAIQRNKDLTQTQESLGQRSAEVAAVNR 199

Query: 451 VMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
              L S++E   D I + +  +   +  NRA  +L GY  ++++ K       +      
Sbjct: 200 F--LDSVIETIPDMIFVKDAADLRFVRFNRAGEELLGYSRDELVGKNDYDLFPEAEADAF 257

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWK 565
                E+L+  +   + +  + +  +   + L      +  S            D++E K
Sbjct: 258 TSKDQEVLTRGMVLDIPEEPIHTRNKGDRI-LHTKKIPIFDSKGRPLYLLGISRDVTEKK 316

Query: 566 QEKNKLSHAKKIAEKESS 583
           + ++ L    +   K   
Sbjct: 317 KLEDALRKRNEELSKSQE 334



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 41/387 (10%), Positives = 82/387 (21%), Gaps = 32/387 (8%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT-TL 149
           A       +    + +G    +++G    D+      D        +  +          
Sbjct: 218 ADLRFVRFNRAGEELLGYSRDELVGKNDYDLFPEAEADAFTSKDQEVLTRGMVLDIPEEP 277

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
                    +      +PI+            GI                L K+   L +
Sbjct: 278 IHTRNKGDRILHT-KKIPIFDSKGRP--LYLLGISRDVTEKKKLED---ALRKRNEELSK 331

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
            ++       E   +        + R +   + +      +     T    L        
Sbjct: 332 SQEDLQWSNSELNKLRLALEARVNQRTQQLTAVVEALRESEARTRLTIDTALDAVVAMDA 391

Query: 270 PEQEDFHTINLNQY----TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
                               +     L            H          +EG  L+   
Sbjct: 392 HGLVREWNAQAETIFGWKRDEAIGKPLAGLVIPRQHREGHARGLERFLATNEGPILSQRL 451

Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
                    ++  G        F +      +  ++     S  L           + + 
Sbjct: 452 ELTA-----LHREGR------EFPVELSITPM-LLQGEWTFSAFLRDITDRKQMEERTLN 499

Query: 386 LYRSDRTCIA------ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ---NGIEPE 436
           L R     +A       +AR      NR  S  +  +  E               G+   
Sbjct: 500 LNRELEQRVAQRTTELVAAREAADTANRAKSTFLATMSHEIRTPMNGMFGMLELLGLTEL 559

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSD 463
           D D R     +      L  I++   D
Sbjct: 560 DTDQRATLAIVRESSQSLLCIIDDILD 586



 Score = 44.6 bits (104), Expect = 0.061,   Method: Composition-based stats.
 Identities = 23/158 (14%), Positives = 50/158 (31%), Gaps = 12/158 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP--NNHIGDLLKRQN----T 142
           +DAHG ++E + +     G    + IG  L  +             +   L        +
Sbjct: 389 MDAHGLVREWNAQAETIFGWKRDEAIGKPLAGLVIPRQHREGHARGLERFLATNEGPILS 448

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
              + T    EG     P++L+  P+     E++ F  F  +               L++
Sbjct: 449 QRLELTALHREGR--EFPVELSITPML-LQGEWT-FSAF--LRDITDRKQMEERTLNLNR 502

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV 240
           +       +       +E  D  ++        M +++
Sbjct: 503 ELEQRVAQRTTELVAAREAADTANRAKSTFLATMSHEI 540


>gi|327440829|dbj|BAK17194.1| signal transduction histidine kinase [Solibacillus silvestris
           StLB046]
          Length = 592

 Score =  328 bits (842), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 88/364 (24%), Positives = 151/364 (41%), Gaps = 29/364 (7%)

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
            E  QL SIL + +D +   NR+  IL +N    +L      +      +  +       
Sbjct: 255 QEKEQLSSILTSMTDSVITFNRDKTILVSNPPAERLLQKWFVE-KGLDSSKPIPDE---- 309

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISEWKQE 567
           +   L  +L+ + +   E         +   S+ I       S       + D +E  + 
Sbjct: 310 LYQMLDHVLNFEDQLDEEFEM-----GKSYYSITISPLYSRDSIRGAVAVIRDKTEETKL 364

Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
           +                KSDF+A VSHE+RTP+  + G+SE I +           I+  
Sbjct: 365 E--------------KLKSDFIANVSHELRTPIAMLQGYSEAIIDGVVTT--EEERIDMI 408

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
             I      +  +V DLLD++++ESG M L+ E V L   +          A EK + ++
Sbjct: 409 RVIYDESQRMSRLVTDLLDLARMESGHMTLYKEEVPLVTVIERMTHKFDQTAKEKHVQLQ 468

Query: 688 TSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
                ++   I  D   ++Q+  N++ NAI  TP+ G + +S          ++V DTG 
Sbjct: 469 IETDFSDETLISIDEDRIEQVLTNLIDNAIRHTPADGSVTVSM-INEQNYAKIQVSDTGQ 527

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+   +L    + F +   ++     GTGLGL + K +V+A+ G+  + S   +GT    
Sbjct: 528 GIPQDDLPYVFERFYKADKARTRSKGGTGLGLAITKNIVEAHNGRISVDSVEQQGTTFTF 587

Query: 807 IFPL 810
             PL
Sbjct: 588 YLPL 591


>gi|327439250|dbj|BAK15615.1| signal transduction histidine kinase [Solibacillus silvestris
           StLB046]
          Length = 512

 Score =  328 bits (842), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 97/423 (22%), Positives = 167/423 (39%), Gaps = 30/423 (7%)

Query: 392 TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV 451
             I  +     +      + A    P                  +   TR       IE 
Sbjct: 118 PIINITKTARELSKGNYRARAFANGPTTIVELRNSINILARNLQDITKTRA------IEE 171

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
            +L +++E     + +I+REG I   N+    LF  P E ++   F +            
Sbjct: 172 ERLKTLIENMGSALMMIDREGNISIVNKKFQTLFELPKEKLIGNNFMMLGLPKELEKFID 231

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKN 569
           ++  +  L  RQ LE        E     +                + MHD+SE  + + 
Sbjct: 232 HVF-LTELPYRQQLEMEIAN---EVYYEQVYGAPVVGEHGRWLGVVIVMHDVSELVRLE- 286

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
                          + DF+A VSHE+RTP+T+I GFSE + +  F        + +   
Sbjct: 287 -------------QIRKDFVANVSHELRTPITSIKGFSETLLDGAFN--DEQMLLSFLTI 331

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I    N +  +VNDLL++SKIE     L   P  L + +   + L       K +     
Sbjct: 332 IHDESNRIQVLVNDLLELSKIERHGFTLDVVPTKLQDILVRVVDLTSAQLENKNMQFDVE 391

Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749
              +   IL D+  + QI  N+++NAI ++     + +  +      +   V+D G+G+ 
Sbjct: 392 IEQDA-VILGDVNRLMQIFTNLINNAIAYSKEETTVTLRISANDQYGI-FEVKDEGIGIE 449

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             E+ +  + F ++  ++     GTGLGL + K +++A+ GK  + S   KGT I++  P
Sbjct: 450 KAEISRIFERFYRVDRARSRNSGGTGLGLSIVKHLIEAHNGKIIVQSEVGKGTSIKVYLP 509

Query: 810 LYD 812
           L D
Sbjct: 510 LKD 512


>gi|283851239|ref|ZP_06368522.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283573408|gb|EFC21385.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 710

 Score =  328 bits (842), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 107/585 (18%), Positives = 218/585 (37%), Gaps = 59/585 (10%)

Query: 241 SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF 300
           +S+                    + +  L  +E+   +       +          + + 
Sbjct: 4   ASVAGDETLPLRRRAESLLAGTAAGDPCLLSREEMARLIHELRVSQVELELQNEELRRTQ 63

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDD 359
             L+H              +   +  D  P  +F     G +  AN     +   +  D 
Sbjct: 64  AELAHT------------RDRYADLYDFAPAGYFTLDARGTVLEANLKGAAMLGRER-DA 110

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA-MTFIPF 418
           +        +L       + A     L R   T  A + ++  ++ +     A ++  P 
Sbjct: 111 LPGNPFSDHIL-----PSDRAAFAAYLARIRETGRAGTLQIRLLRPDGARVWAELSAEPK 165

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII----NREGII 474
              +       +     +  +  + ++        L ++L++    I  +    + + ++
Sbjct: 166 PPFDPLGAASLRMVA-TDMTEGVLARQD-------LATVLDSAPIPIVKVRVTGDGDRVL 217

Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
           +  N A ++LFG   ++ L +    FL            + +         ++     T+
Sbjct: 218 VYQNPAAARLFG---DEALERSCKGFLCNKEVCPALAAESGV-------VRDRECAVKTR 267

Query: 535 EEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
             + + +     KLP +      M D++E  + +  L+ A + AE  +  K+ FLA +SH
Sbjct: 268 FGERI-MYKTAHKLPDAPYIIEAMVDVTELMRTRRNLTRAMEAAEAANRAKTQFLATMSH 326

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           EIRTP+  ++G +E+       P       EY +   +S   +LDI+ND+LD S+IE+G+
Sbjct: 327 EIRTPMNGVMGMTELALQTDLTP----EQREYLDLARQSALSLLDIINDILDFSRIEAGR 382

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILS 713
           M L   P SL   +   + L    A  +   +R + A   P  ++ D   + Q+  N++S
Sbjct: 383 MELARAPFSLRRTLGSCLRLFDNLAARQGNDLRLAVAQEAPDGLVGDAGRLSQVIANLVS 442

Query: 714 NAIHFTPSGG-QIIISTT----------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
           N + FT  G  ++ + T                  +  V DTG+G+   + +     F Q
Sbjct: 443 NGLKFTRDGSVRVTVDTAPPLHCPLGPERGHAATFLFSVSDTGIGIPRDKHDHIFDYFTQ 502

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           +         GTGLGL +++ +V    G+ ++ S P +G+     
Sbjct: 503 LDAGLSREAGGTGLGLSISRNLVALMGGRIWVESEPNRGSTFFFT 547



 Score = 42.7 bits (99), Expect = 0.28,   Method: Composition-based stats.
 Identities = 28/354 (7%), Positives = 84/354 (23%), Gaps = 39/354 (11%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCD-VSDILHIDPNNHIGDLLKRQNTWYG 145
           + +DA G + E + +    +G     + G    D +          ++  + +       
Sbjct: 85  FTLDARGTVLEANLKGAAMLGRERDALPGNPFSDHILPSDRAAFAAYLARIRETGRAGTL 144

Query: 146 KTTLWPIEGTNLYVPIDLAALP---------------IYSRNREFSGFRGFGIVHVNRVD 190
           +  L   +G    V  +L+A P                          +    V  +   
Sbjct: 145 QIRLLRPDG--ARVWAELSAEPKPPFDPLGAASLRMVATDMTEGVLARQDLATVLDSAPI 202

Query: 191 NDPRALG-----KRLDKKFSHLHEIKKGHS---------------SVEKEKYDIFSQQSP 230
              +        + L  +      +    +                    +  +   +  
Sbjct: 203 PIVKVRVTGDGDRVLVYQNPAAARLFGDEALERSCKGFLCNKEVCPALAAESGVVRDREC 262

Query: 231 PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG 290
               R   ++   T +       +      +     +                 K Q+  
Sbjct: 263 AVKTRFGERIMYKTAHKLPDAPYIIEAMVDVTELMRTRRNLTRAMEAAEAANRAKTQFLA 322

Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLL 350
           T+ +  +     +      +L       +    +   +  +      +  L ++      
Sbjct: 323 TMSHEIRTPMNGVMGMTELALQTDLTPEQREYLDLARQSALSLLDIINDILDFSRIEAGR 382

Query: 351 LTKYKSVDDIEI-AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403
           +   ++   +    G    L D       N ++  +   +    +  + RL  +
Sbjct: 383 MELARAPFSLRRTLGSCLRLFDNLAARQGNDLRLAVAQEAPDGLVGDAGRLSQV 436


>gi|242280564|ref|YP_002992693.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens
           DSM 2638]
 gi|242123458|gb|ACS81154.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens
           DSM 2638]
          Length = 1006

 Score =  328 bits (842), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 90/395 (22%), Positives = 171/395 (43%), Gaps = 38/395 (9%)

Query: 445 RKMEIEV--MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
             +       Q     +   D + I + +G+ +  N   +   GY  ++ L+K     + 
Sbjct: 330 ENLRRTRGLEQYQFFFDNVDDLVCITDMDGLFIRVNSGGADFLGYGRDEFLKKTVFELVP 389

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
                 +   +  + + +     E   +  + E     +R               + D++
Sbjct: 390 PYERESLRGLMNSLFAGNNSLQFECPAVAKSGEIVYTDVRSRRITYHGQDVLLSVVRDVT 449

Query: 563 EWKQEKNKLSHA----------------------------KKIAEKESSHKSDFLARVSH 594
           + K+++ +L H                                AE  +  KS+FLA++SH
Sbjct: 450 DRKRDEEELQHYAAELLKAKEIEERNSAHMADTLKKLEEAMTRAEVANRTKSEFLAQMSH 509

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           EIRTP+ +I+G ++++ + R           Y +    SG  +L++++D+LD+SKIESGK
Sbjct: 510 EIRTPMNSILGMADMLTDTRLTS----EQRNYVSIFRDSGKALLNLIDDILDLSKIESGK 565

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILS 713
           + L     ++D+ V E   ++ + A +K ++         P     D   +KQI +N+LS
Sbjct: 566 LTLEHTKFNIDDLVDEVAGIMSVSAWKKNLIFACHVDPYCPSFFEGDPTRIKQILVNLLS 625

Query: 714 NAIHFTPSGGQI-IISTTHTSNEEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           NAI FT SG  +  IS++  S  + IL   VRD+G+G++  + +   + F Q  +S   +
Sbjct: 626 NAIKFTDSGSVVLEISSSPGSQGKTILNMIVRDSGIGISEEKFKDIFENFVQADSSTTRK 685

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
             GTGLGL + + +V+   G   + +  + G    
Sbjct: 686 YGGTGLGLSITRNLVELMNGHIDVRNVSSGGAEFR 720



 Score = 46.9 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/166 (7%), Positives = 44/166 (26%), Gaps = 9/166 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQNTWYGKT 147
            D  G    ++      +G    + +   + ++      +    +   L    N+   + 
Sbjct: 355 TDMDGLFIRVNSGGADFLGYGRDEFLKKTVFELVPPYERESLRGLMNSLFAGNNSLQFEC 414

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                 G  +Y  +    +  + ++          +V             +    +    
Sbjct: 415 PAVAKSGEIVYTDVRSRRITYHGQD------VLLSVVRDVTDRKRDEEELQHYAAELLKA 468

Query: 208 HEIKKGHSSVEKEKYDIFSQQ--SPPPHLRMKNKVSSLTEYYAHKD 251
            EI++ +S+   +      +         R K++  +   +     
Sbjct: 469 KEIEERNSAHMADTLKKLEEAMTRAEVANRTKSEFLAQMSHEIRTP 514


>gi|159900452|ref|YP_001546699.1| GAF sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159893491|gb|ABX06571.1| GAF sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 701

 Score =  328 bits (842), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 102/434 (23%), Positives = 192/434 (44%), Gaps = 40/434 (9%)

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR----KMEIEVMQLCSI 457
            ++   E    +      +      ++       +     + +     ++    MQL   
Sbjct: 281 PVRVEGEAWAVLVLSTNREPIFTTRDLYFIQALADVAARPLQRATSYSELLEARMQLQQT 340

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPV---EDILRKPFTVFLEQNTPSVMNHYLT 514
           L +   G+A+ + EG IL TN A  +L+       E  L  P+ +             LT
Sbjct: 341 LASLPLGLALTDGEGRILRTNPAWYQLWQIEQPADETALYLPWDILPLLLKRLSHPLELT 400

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNK 570
           +  +    Q  E + L     E L  L++    +  +        + + D++  ++    
Sbjct: 401 DFFAECQAQPDETLELALRLSEPLQDLKLRSTPVKDAQHQITGRLVVIEDVTREREI--- 457

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
                         K++F++ VSHE+RTPLT+I+G++E++  + F P+      E+   +
Sbjct: 458 -----------DKMKNEFVSVVSHELRTPLTSILGYTELLLAREFKPV---ERQEFVQTV 503

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
               N +  +V+DLL++S++++G++ L+   VSL + + E    +    +EK   +    
Sbjct: 504 YDQANQLSKMVDDLLNLSRLDAGQIKLNRWVVSLHQIIREITKQLNETLSEKH-RLLIDI 562

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT-----------HTSNEEVIL 739
              IP I AD   V+QI  N+LSNAI ++P+GGQ+ +                +   VI+
Sbjct: 563 PEGIPPIFADKDKVRQILTNLLSNAIKYSPNGGQVALIVRELRKVPPGAPPLPNERSVII 622

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            VRD G+G++  +L K    F ++ NS   +  GTGLGL + KA+++ + G+ +  ST  
Sbjct: 623 AVRDQGMGISEEDLPKLFTRFFRVDNSTTRKIGGTGLGLSITKALIELHGGRIWATSTLG 682

Query: 800 KGTLIEIIFPLYDT 813
           +GT   +  P+   
Sbjct: 683 RGTTFWVTLPIATE 696


>gi|73749292|ref|YP_308531.1| sensor histidine kinase/response regulator [Dehalococcoides sp.
           CBDB1]
 gi|73661008|emb|CAI83615.1| sensor histidine kinase/response regulator [Dehalococcoides sp.
           CBDB1]
          Length = 1092

 Score =  328 bits (842), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 115/745 (15%), Positives = 223/745 (29%), Gaps = 49/745 (6%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTWYGKT 147
           +A   +           G  + + IG  + D++ I   D          LK   +     
Sbjct: 231 NADFVITRWEGAALNIFGWNSDETIGKSIYDLNIIYEPDAPIVEQTIKTLKEGISSQVVF 290

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                      +        +Y+ N +         V  +      +      +K +  L
Sbjct: 291 LNRNYTKDRRVIYCTWYNSALYASNGKLI--STMSQVEDSTEREQIKISLAENEKHYREL 348

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSS--LTEYYAHKDDVLKTEKYPLLT 263
           +E          +             +    K +V      E+ A +D     + +PL  
Sbjct: 349 YEQSPAGYQSLDQNGIFVEVNQIWLDILGYQKEEVIGHWFGEFVAPEDLDKFKKNFPLFV 408

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY----LSHRNHPSLSAYFDEGE 319
               S          +                  E  +                   E +
Sbjct: 409 KAG-STHVDFKMKRKDGQISIVTFEGRIAYTPKGEFKQTHCIIQDITERYMAEEATREHK 467

Query: 320 NLTPETVDKCPIPFFVYSH------GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
                  +       V+        G    AN +   L  Y   + ++++     +    
Sbjct: 468 ERYQALFNSNNDAILVHQPKGELTPGTFMEANDAASTLLGYSREELLKLSPF--DITKRD 525

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
           +  ++  IK +   R         A    I  +             K            I
Sbjct: 526 ENGEHPVIKAIESLRRTGK---VQAERIFIHKDHHEIPVEINARLFKYKGTDT---IITI 579

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
             +    +  +  +     +  +  ++  D IAI++ + I++  N A +   G    D++
Sbjct: 580 AHDITTRKQAEAALTHSAEEWRTTFDSIKDMIAIVDPKHIVIRVNLAFASALGLKPNDLV 639

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS- 552
            K     +               L     ++ E       + +  +              
Sbjct: 640 GKYCYQVVHGMNQPHPMCPHARTLESRHVESSEY---YDKRLKLWVEASSSPIFNKKGEL 696

Query: 553 -CYSLTMHDISEWKQEKNKLSHAKKIAEKESS--HKSDFLARVSHEIRTPLTAIIGFSEV 609
                 + DIS+ K+E+ +    +  AE  S      +  A ++HEI  PLT +IGFSE+
Sbjct: 697 TGSVHIIKDISKRKEEELQQQQLRNKAEMSSRLAAVGEMAAGIAHEINNPLTGVIGFSEL 756

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           +  +   P            I+       +I+  +L  ++    +       V++ E ++
Sbjct: 757 LLEREDLP---DDIKANLKIINDGSQRAKEIIKRMLTFAR----QTTPQMSRVNITELIN 809

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA---IHFTPSGGQII 726
             + L         I I   +   +P ++AD   ++Q+ LN++ NA   +      G + 
Sbjct: 810 HTLELRNYVLATANIKIVKDYDATLPWVVADPGQLQQVFLNLIVNAEYAMKKAHDKGILT 869

Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
           I T       V + V+D G GM     +K  +PF          GEGTGLGL L+  ++ 
Sbjct: 870 IKTEKLD-GYVRISVKDDGPGMPEGIRKKLFQPFFTTKEP----GEGTGLGLSLSLGIIQ 924

Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLY 811
            + G     S   KGT   I  P+ 
Sbjct: 925 EHTGTIRAESEEGKGTTFIIELPIA 949



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/398 (10%), Positives = 103/398 (25%), Gaps = 36/398 (9%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147
           +D +G   E+++     +G    ++IG    +      +D    +    +K  +T     
Sbjct: 359 LDQNGIFVEVNQIWLDILGYQKEEVIGHWFGEFVAPEDLDKFKKNFPLFVKAGSTHVDFK 418

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                +G    V  +      Y+   EF   +   I+             +   +++  L
Sbjct: 419 MK-RKDGQISIVTFE--GRIAYTPKGEFK--QTHCIIQDITERYMAEEATREHKERYQAL 473

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS--SLTEYYAHKDDVLKTEKYPLLTSE 265
                    V + K ++        +      +             D+ K ++       
Sbjct: 474 FNSNNDAILVHQPKGELTPGTFMEANDAASTLLGYSREELLKLSPFDITKRDENGEHPVI 533

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS----------HRNHPSLSAYF 315
           ++    +          +  K +       +   F+Y                    A  
Sbjct: 534 KAIESLRRTGKVQAERIFIHKDHHEIPVEINARLFKYKGTDTIITIAHDITTRKQAEAAL 593

Query: 316 DEGENLTPETVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
                    T D       +    ++    N +F      K  D +              
Sbjct: 594 THSAEEWRTTFDSIKDMIAIVDPKHIVIRVNLAFASALGLKPNDLVGK-------YCYQV 646

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
           +   N   P+  +              +  +++   L +        N+  E      I 
Sbjct: 647 VHGMNQPHPMCPHARTLESRHVE---SSEYYDKRLKLWVEASSSPIFNKKGELTGSVHII 703

Query: 435 PEDVDTRINK---RKMEIEVM---QLCSILEATSDGIA 466
            +    +  +   +++  +     +L ++ E  + GIA
Sbjct: 704 KDISKRKEEELQQQQLRNKAEMSSRLAAVGE-MAAGIA 740



 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/186 (11%), Positives = 61/186 (32%), Gaps = 14/186 (7%)

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM-------EIEVMQLCSILEATSDG 464
            +T  P          + Q        +  +++RK+            +L    + +   
Sbjct: 167 VLTIFPLAGLVVCLLFIDQESYYSTISELSLSERKLTTALDTIREGNEKLRLHTQNSPLA 226

Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF--LEQNTPSVMNHYLTEILSLDLR 522
               N + +I     A   +FG+  ++ + K       + +    ++   +  +    + 
Sbjct: 227 TIEWNADFVITRWEGAALNIFGWNSDETIGKSIYDLNIIYEPDAPIVEQTIKTLKE-GIS 285

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT----MHDISEWKQEKNKLSHAKKIA 578
             +  +    TK+ +++        L  S+   ++    + D +E +Q K  L+  +K  
Sbjct: 286 SQVVFLNRNYTKDRRVIYCTWYNSALYASNGKLISTMSQVEDSTEREQIKISLAENEKHY 345

Query: 579 EKESSH 584
            +    
Sbjct: 346 RELYEQ 351


>gi|288962795|ref|YP_003453089.1| two-component sensor histidine kinase [Azospirillum sp. B510]
 gi|288915061|dbj|BAI76545.1| two-component sensor histidine kinase [Azospirillum sp. B510]
          Length = 448

 Score =  328 bits (842), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 115/428 (26%), Positives = 211/428 (49%), Gaps = 36/428 (8%)

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
              +   E + +      +++  + + +  +  ++  S+++  +  I ++  +G +L  N
Sbjct: 17  PSVSDPAETIRRLEARIAELEANLRRSETRVGELRFRSLVQTAASIILVLGADGRVLEAN 76

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST-KEEK 537
               + FG  V   + +P+T  +E+         L         +  E+       + E+
Sbjct: 77  HEAERAFGLEVGQAVGRPWTEVMEERPNGAFATQLAMAAEGTEIRNFEQAVRDQQYRSER 136

Query: 538 LLSLRIIIKKLPFSS--CYSLTMHDIS--------------------------------E 563
           +L   +        +         DI+                                E
Sbjct: 137 VLLWNLNRLPESDGAPAGILCVGQDITRRKRAEMALRQARDELEMRVADRTRALMQEIQE 196

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            ++ +  L  AK+ AE  +  KS+FLA +SHE+RTPL AIIGFS +++++  GPLG+P+Y
Sbjct: 197 RRRAEQALIQAKEQAELANRAKSEFLANMSHELRTPLNAIIGFSSMMESEIVGPLGHPKY 256

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
           ++YA  I +SG  +L +++D+LD++KIE+GK+ +H +P+ + +AV  ++ L+   A E  
Sbjct: 257 LDYAKVIGKSGQHLLAVISDILDVAKIEAGKLEMHPQPMDVRDAVESSLLLIAERAKEGG 316

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
           + +    A + PR+L D   VKQI LN+L+NA+ FTP+GG + +         +++ V D
Sbjct: 317 LTLVQDIAPDTPRLLGDPVRVKQILLNLLANAVKFTPAGGSVTLRVRPE-GGRILIEVAD 375

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           +G+GM+   +  A++PFGQ+ +    R  GTGLGLPL ++ V+   G   I S   +GT 
Sbjct: 376 SGIGMSAEGIAIALQPFGQVDSQLSRRSGGTGLGLPLVRSFVELLNGTLDIRSREGEGTT 435

Query: 804 IEIIFPLY 811
           I +  P+ 
Sbjct: 436 ISVRLPVA 443



 Score = 44.6 bits (104), Expect = 0.061,   Method: Composition-based stats.
 Identities = 22/182 (12%), Positives = 52/182 (28%), Gaps = 6/182 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG--K 146
           + A G + E + E  +  G    + +G    +V      +        +  + T     +
Sbjct: 66  LGADGRVLEANHEAERAFGLEVGQAVGRPWTEV-MEERPNGAFATQLAMAAEGTEIRNFE 124

Query: 147 TTLWPIEGTNLYVPI-DLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
             +   +  +  V + +L  LP            G  I    R +   R     L+ + +
Sbjct: 125 QAVRDQQYRSERVLLWNLNRLPESDGAPAGILCVGQDITRRKRAEMALRQARDELEMRVA 184

Query: 206 HLHEIKKGHSSVEKEK--YDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
                        +      I +++      R K++  +   +              ++ 
Sbjct: 185 DRTRALMQEIQERRRAEQALIQAKEQAELANRAKSEFLANMSHELRTPLNAIIGFSSMME 244

Query: 264 SE 265
           SE
Sbjct: 245 SE 246


>gi|147669545|ref|YP_001214363.1| PAS/PAC sensor hybrid histidine kinase [Dehalococcoides sp. BAV1]
 gi|146270493|gb|ABQ17485.1| PAS/PAC sensor hybrid histidine kinase [Dehalococcoides sp. BAV1]
          Length = 1262

 Score =  328 bits (842), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 110/750 (14%), Positives = 242/750 (32%), Gaps = 55/750 (7%)

Query: 87   WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP--NNHIGDLLKRQNTW- 143
            W  D    +   S+   +  G     ++ +       +    P  +  + +L+K+   + 
Sbjct: 406  WEFDLANGVVHPSDGAREIYGLKEG-ILTIPFVQQIPVPEDRPAMDKALNNLIKQNIPYD 464

Query: 144  YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                   P +G  LY+     ++  +   R       FG +           L +  + +
Sbjct: 465  IEFKIKRPTDGAILYI----HSIAEFDSKRNVV----FGTIQDITKRKQAEELLRESEAR 516

Query: 204  FSHLHEIKK--GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH---KDDVLKTEK 258
            F    +             KY   +++         ++ +SL                  
Sbjct: 517  FRSTFDQSPIGAAIYGLDLKYRQVNEKFCQMLGYSASEFTSLKVSDITNSDDFAKDIIHL 576

Query: 259  YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
              L   E S     + +   + + +        +++ +     YL+     +     ++ 
Sbjct: 577  NRLKNGEISRYETDKRYLQKSGSIFWAHLSVAGIRDVTGNLLYYLAMIVDITARKAAEDA 636

Query: 319  ENLTPETVDKCPIPFFVY--SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
                    +             G L  AN + +    Y     +           + K+ 
Sbjct: 637  LQKYKLIAEDSRDIILFMNKEGGQLLEANSAAVKAYGYSREQLL-----------SMKIQ 685

Query: 377  DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
            +  A +  +L    R        L       ++          +            I  +
Sbjct: 686  NLRAPQARVLTARQRNQAYVRGMLFETFHQSKDGRVFPVEVSSRGADIEGTTTLINIIRD 745

Query: 437  DVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-----GIILSTNRAVSKLFGYPVED 491
              + +  +  +   +     +  + +D I +         G  +  N A   + GY  ++
Sbjct: 746  TTERKQAENALNESLQNYQVLFNSVTDAILVHQPAADYSAGKFIEVNDAALAMLGYSRKE 805

Query: 492  ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII--IKKLP 549
            +L+      + +     ++ +   I  ++    +       TK  K + + +   + K  
Sbjct: 806  LLQITPMDLMSKGKYP-VSAFADNIRYIEKNTEVVSEYTMETKSGKTIPVELHSRMFKFG 864

Query: 550  FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS--HKSDFLARVSHEIRTPLTAIIGFS 607
                      DISE K+ + +    +  +E  S      +  A ++HEI  PLT +IGF+
Sbjct: 865  GKRTVITLARDISERKKMEEEQKKLRYQSEMSSRLAAVGEMAAGIAHEINNPLTGVIGFA 924

Query: 608  EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
             ++  +   P      ++    I+     V++IV  +L  ++    +       V++ E 
Sbjct: 925  SILMEREDLPAD---VMDELQIINSGSQRVVEIVKRMLTFAR----QAKPVRSSVNITEL 977

Query: 668  VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA---IHFTPSGGQ 724
            +   + L         I +   +   +P +  D   ++Q+ LN++ NA   +      G 
Sbjct: 978  IDNTLDLRSYVLKTANIEVVRHYEPELPLLTVDSGQMQQVILNLILNAEYSMKKAHEKGI 1037

Query: 725  IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
            + I       E V +  +D G+GM+   L K  +PF    +     GEGTGLGL L+  +
Sbjct: 1038 LTIRVKKE-GEWVRMSFQDNGLGMSTETLGKLFQPFFTTKDP----GEGTGLGLSLSHGI 1092

Query: 785  VDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
            + A+ G     S   +G    I  P+  + 
Sbjct: 1093 ILAHEGTIRGESILGEGAEFTIELPIKPSD 1122



 Score =  133 bits (335), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 50/507 (9%), Positives = 137/507 (27%), Gaps = 31/507 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D+ G   E+++     +G    ++IG    +      +D       + K   T   +  
Sbjct: 154 LDSEGRFLEVNQVWLDDMGYKREEVIGHWFGEFLQPDQVDLFRKRFPVFKATGTADTEFY 213

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           +   +G+   V +  +       N  F   +    +      +      +   +K+  L 
Sbjct: 214 MNRKDGS--VVLMAFSGKIGCDANGNFK--QTHCALQDITQRHLADEAIRESQRKYQALF 269

Query: 209 EIKKGHSSV------EKEKYDIFSQQSPPPHLRMKNKV---SSLTEYYAHKDDVLKTEKY 259
           E     + V      E     +         L   ++     S    + H    L +++ 
Sbjct: 270 ESIGEAAFVCYINNREWADGFVELNAVACDMLGYTHEELLKISARNLFFHPSSGLLSKEI 329

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFG--TLQNNSKESFEYLSHRNHPSLSAYFDE 317
                 +  +  + +    + +  + +  F    LQ                 ++   ++
Sbjct: 330 TDELYAQKMVTRECNLPHKDGHNISVEVTFHIFDLQGRPAVLILAHDITIRKKIARELEQ 389

Query: 318 GENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
                 +        ++ +   N + + +     +        ++        +    + 
Sbjct: 390 SHRRLVKAEKVAGFGYWEFDLANGVVHPSDGAREIYG------LKEGILTIPFVQQIPVP 443

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           ++       L    +  I         +      L +  I    + +        G   +
Sbjct: 444 EDRPAMDKALNNLIKQNIPYDIEFKIKRPTDGAILYIHSIAEFDSKRNV----VFGTIQD 499

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
               +  +  +     +  S  + +  G AI   +      N    ++ GY   +     
Sbjct: 500 ITKRKQAEELLRESEARFRSTFDQSPIGAAIYGLDLKYRQVNEKFCQMLGYSASEFTSLK 559

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--- 553
            +     +  +    +L  +         E       K   +    + +  +   +    
Sbjct: 560 VSDITNSDDFAKDIIHLNRL-KNGEISRYETDKRYLQKSGSIFWAHLSVAGIRDVTGNLL 618

Query: 554 -YSLTMHDISEWKQEKNKLSHAKKIAE 579
            Y   + DI+  K  ++ L   K IAE
Sbjct: 619 YYLAMIVDITARKAAEDALQKYKLIAE 645



 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 45/514 (8%), Positives = 131/514 (25%), Gaps = 51/514 (9%)

Query: 89  IDAH-GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
           +DA+ G + + +  L   +G    +++G  L ++     I  +     +L+ +     + 
Sbjct: 29  LDANTGKIADANPFLLNILGYAQEEILGKELWEIGIFKDIASSRKAFAVLQEKEYIRYED 88

Query: 148 TLWP-IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                  G    V        +               +           L ++ ++++  
Sbjct: 89  LPLKTKNGQIQQVEFVSNVYWVGDEK------IIQCNIRDITDRKRAEELLRKTEERYRE 142

Query: 207 LHEIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
            ++           +                 + +V         + D +   +      
Sbjct: 143 FYQKSPIGYQSLDSEGRFLEVNQVWLDDMGYKREEVIGHWFGEFLQPDQVDLFRKRFPVF 202

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF-----EYLSHRNHPSLSAYFDEGE 319
           + +   + E +            + G +  ++  +F                     E +
Sbjct: 203 KATGTADTEFYMNRKDGSVVLMAFSGKIGCDANGNFKQTHCALQDITQRHLADEAIRESQ 262

Query: 320 NLTPETVDKCPIPFFV------YSHGNLFYANPSFLLLTKYKSVDDI----------EIA 363
                  +      FV               N     +  Y   + +            +
Sbjct: 263 RKYQALFESIGEAAFVCYINNREWADGFVELNAVACDMLGYTHEELLKISARNLFFHPSS 322

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
           G LS  +     +     +   L   D   I+     H        ++ +          
Sbjct: 323 GLLSKEITDELYAQKMVTRECNLPHKDGHNISVEVTFHIFDLQGRPAVLILAH------- 375

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
                       +    +   R++E    +L    +    G    +    ++  +    +
Sbjct: 376 ------------DITIRKKIARELEQSHRRLVKAEKVAGFGYWEFDLANGVVHPSDGARE 423

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           ++G     +                M+  L  ++  ++   +E   +    +  +L +  
Sbjct: 424 IYGLKEGILTIPFVQQIPVPEDRPAMDKALNNLIKQNIPYDIEFK-IKRPTDGAILYIHS 482

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI 577
           I +     +    T+ DI++ KQ +  L  ++  
Sbjct: 483 IAEFDSKRNVVFGTIQDITKRKQAEELLRESEAR 516



 Score =  102 bits (254), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 47/402 (11%), Positives = 112/402 (27%), Gaps = 25/402 (6%)

Query: 197 GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS-----LTEYYAHKD 251
            +  + ++  L E  +    +        +  +P     +           L E    KD
Sbjct: 8   LEASELRYRRLFETAQDGILILDANTGKIADANPFLLNILGYAQEEILGKELWEIGIFKD 67

Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT--LQNNSKESFEYLSHRNHP 309
                + + +L  +E    E     T N      +       + +            +  
Sbjct: 68  IASSRKAFAVLQEKEYIRYEDLPLKTKNGQIQQVEFVSNVYWVGDEKIIQCNIRDITDRK 127

Query: 310 SLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
                  + E    E   K PI +  + S G     N  +L    YK  + I    G   
Sbjct: 128 RAEELLRKTEERYREFYQKSPIGYQSLDSEGRFLEVNQVWLDDMGYKREEVIGHWFGE-- 185

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
               P   D    +  +   +          ++       + + M F      +      
Sbjct: 186 -FLQPDQVDLFRKRFPVFKAT--GTADTEFYMNR---KDGSVVLMAFSGKIGCDANGNFK 239

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI-----ILSTNRAVSK 483
             +    +     +    +     +  ++ E+  +   +            +  N     
Sbjct: 240 QTHCALQDITQRHLADEAIRESQRKYQALFESIGEAAFVCYINNREWADGFVELNAVACD 299

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           + GY  E++L+          +  +++  +T+   L  ++ + +      K+   +S+ +
Sbjct: 300 MLGYTHEELLKISARNLFFHPSSGLLSKEITD--ELYAQKMVTRECNLPHKDGHNISVEV 357

Query: 544 I--IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
              I  L       +  HDI+  K+   +L  + +   K   
Sbjct: 358 TFHIFDLQGRPAVLILAHDITIRKKIARELEQSHRRLVKAEK 399



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/292 (8%), Positives = 75/292 (25%), Gaps = 38/292 (13%)

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
               +  E       +       +     G +  ANP  L +  Y   + +        +
Sbjct: 5   RLGLEASELRYRRLFETAQDGILILDANTGKIADANPFLLNILGYAQEEILGKELWEIGI 64

Query: 370 LDAPKLSDNN----------AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
                 S               + + L   +         +  + W  +  +        
Sbjct: 65  FKDIASSRKAFAVLQEKEYIRYEDLPLKTKNGQIQQVEF-VSNVYWVGDEKIIQCN---- 119

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
                           +  D +  +  +     +     + +  G   ++ EG  L  N+
Sbjct: 120 --------------IRDITDRKRAEELLRKTEERYREFYQKSPIGYQSLDSEGRFLEVNQ 165

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
                 GY  E+++   F  FL+ +   +         +       +     + K+  ++
Sbjct: 166 VWLDDMGYKREEVIGHWFGEFLQPDQVDLFRKRFPVFKATGTA---DTEFYMNRKDGSVV 222

Query: 540 SLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
            +    K    ++         + DI++       +  +++  +       +
Sbjct: 223 LMAFSGKIGCDANGNFKQTHCALQDITQRHLADEAIRESQRKYQALFESIGE 274


>gi|289433253|ref|YP_003463126.1| multi-sensor hybrid histidine kinase [Dehalococcoides sp. GT]
 gi|288946973|gb|ADC74670.1| multi-sensor hybrid histidine kinase [Dehalococcoides sp. GT]
          Length = 1092

 Score =  328 bits (842), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 115/745 (15%), Positives = 223/745 (29%), Gaps = 49/745 (6%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTWYGKT 147
           +A   +           G  + + IG  + D++ I   D          LK   +     
Sbjct: 231 NADFVITRWEGAALNIFGWNSDETIGKSIYDLNIIYEPDAPIVEQTIKTLKEGISSQVVF 290

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                      +        +Y+ N +         V  +      +      +K +  L
Sbjct: 291 LNRNYTKDRRVIYCTWYNSALYASNGKLI--STMSQVEDSTEREQIKISLAENEKHYREL 348

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSS--LTEYYAHKDDVLKTEKYPLLT 263
           +E          +             +    K +V      E+ A +D     + +PL  
Sbjct: 349 YEQSPAGYQSLDQNGIFVEVNQIWLDILGYQKEEVIGHWFGEFVAPEDLDKFKKNFPLFV 408

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY----LSHRNHPSLSAYFDEGE 319
               S          +                  E  +                   E +
Sbjct: 409 KAG-STHVDFKMKRKDGQISIVTFEGRIAYTPKGEFKQTHCIIQDITERYMAEEATREHK 467

Query: 320 NLTPETVDKCPIPFFVYSH------GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
                  +       V+        G    AN +   L  Y   + ++++     +    
Sbjct: 468 ERYQALFNSNNDAILVHQPKGELTPGTFMEANDAASTLLGYSREELLKLSPF--DITKRD 525

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
           +  ++  IK +   R         A    I  +             K            I
Sbjct: 526 ENGEHPVIKAIESLRRTGK---VQAERIFIHKDHHEIPVEINARLFKYKGTDT---IITI 579

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
             +    +  +  +     +  +  ++  D IAI++ + I++  N A +   G    D++
Sbjct: 580 AHDITTRKQAEAALTHSAEEWRTTFDSIKDMIAIVDPKHIVIRVNLAFASALGLKPNDLV 639

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS- 552
            K     +               L     ++ E       + +  +              
Sbjct: 640 GKYCYQVVHGMNQPHPMCPHARTLESRHVESSEY---YDKRLKLWVEASSSPIFNKKGEL 696

Query: 553 -CYSLTMHDISEWKQEKNKLSHAKKIAEKESS--HKSDFLARVSHEIRTPLTAIIGFSEV 609
                 + DIS+ K+E+ +    +  AE  S      +  A ++HEI  PLT +IGFSE+
Sbjct: 697 TGSVHIIKDISKRKEEELQQQQLRNKAEMSSRLAAVGEMAAGIAHEINNPLTGVIGFSEL 756

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           +  +   P            I+       +I+  +L  ++    +       V++ E ++
Sbjct: 757 LLEREDLP---DDIKANLKIINDGSQRAKEIIKRMLTFAR----QTTPQMSRVNITELIN 809

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA---IHFTPSGGQII 726
             + L         I I   +   +P ++AD   ++Q+ LN++ NA   +      G + 
Sbjct: 810 HTLELRNYVLATANIKIVKDYDATLPWVVADPGQLQQVFLNLIVNAEYAMKKAHDKGILT 869

Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
           I T       V + V+D G GM     +K  +PF          GEGTGLGL L+  ++ 
Sbjct: 870 IKTEKLD-GYVRISVKDDGPGMPEGIRKKLFQPFFTTKEP----GEGTGLGLSLSLGIIQ 924

Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLY 811
            + G     S   KGT   I  P+ 
Sbjct: 925 EHTGTIRAESEEGKGTTFIIELPIA 949



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/398 (10%), Positives = 103/398 (25%), Gaps = 36/398 (9%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147
           +D +G   E+++     +G    ++IG    +      +D    +    +K  +T     
Sbjct: 359 LDQNGIFVEVNQIWLDILGYQKEEVIGHWFGEFVAPEDLDKFKKNFPLFVKAGSTHVDFK 418

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                +G    V  +      Y+   EF   +   I+             +   +++  L
Sbjct: 419 MK-RKDGQISIVTFE--GRIAYTPKGEFK--QTHCIIQDITERYMAEEATREHKERYQAL 473

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS--SLTEYYAHKDDVLKTEKYPLLTSE 265
                    V + K ++        +      +             D+ K ++       
Sbjct: 474 FNSNNDAILVHQPKGELTPGTFMEANDAASTLLGYSREELLKLSPFDITKRDENGEHPVI 533

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS----------HRNHPSLSAYF 315
           ++    +          +  K +       +   F+Y                    A  
Sbjct: 534 KAIESLRRTGKVQAERIFIHKDHHEIPVEINARLFKYKGTDTIITIAHDITTRKQAEAAL 593

Query: 316 DEGENLTPETVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
                    T D       +    ++    N +F      K  D +              
Sbjct: 594 THSAEEWRTTFDSIKDMIAIVDPKHIVIRVNLAFASALGLKPNDLVGK-------YCYQV 646

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
           +   N   P+  +              +  +++   L +        N+  E      I 
Sbjct: 647 VHGMNQPHPMCPHARTLESRHVE---SSEYYDKRLKLWVEASSSPIFNKKGELTGSVHII 703

Query: 435 PEDVDTRINK---RKMEIEVM---QLCSILEATSDGIA 466
            +    +  +   +++  +     +L ++ E  + GIA
Sbjct: 704 KDISKRKEEELQQQQLRNKAEMSSRLAAVGE-MAAGIA 740



 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/186 (11%), Positives = 61/186 (32%), Gaps = 14/186 (7%)

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM-------EIEVMQLCSILEATSDG 464
            +T  P          + Q        +  +++RK+            +L    + +   
Sbjct: 167 VLTIFPLAGLVVCLLFIDQESYYSTISELSLSERKLTTALDTIREGNEKLRLHTQNSPLA 226

Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF--LEQNTPSVMNHYLTEILSLDLR 522
               N + +I     A   +FG+  ++ + K       + +    ++   +  +    + 
Sbjct: 227 TIEWNADFVITRWEGAALNIFGWNSDETIGKSIYDLNIIYEPDAPIVEQTIKTLKE-GIS 285

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT----MHDISEWKQEKNKLSHAKKIA 578
             +  +    TK+ +++        L  S+   ++    + D +E +Q K  L+  +K  
Sbjct: 286 SQVVFLNRNYTKDRRVIYCTWYNSALYASNGKLISTMSQVEDSTEREQIKISLAENEKHY 345

Query: 579 EKESSH 584
            +    
Sbjct: 346 RELYEQ 351


>gi|240138362|ref|YP_002962834.1| hypothetical protein MexAM1_META1p1713 [Methylobacterium extorquens
           AM1]
 gi|240008331|gb|ACS39557.1| hypothetical protein MexAM1_META1p1713 [Methylobacterium extorquens
           AM1]
          Length = 1125

 Score =  328 bits (841), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 125/732 (17%), Positives = 238/732 (32%), Gaps = 56/732 (7%)

Query: 123 DILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFG 182
             L + P   +G L    +     T        +L   +  A + +   N  F+  R   
Sbjct: 114 APLILRPGVRLGSLCLADSQPRDFTPEDAAALRDLAEIVT-AQMRLRRDNLAFASERALR 172

Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV-- 240
            +H + +      + +R           +       +  +           LR+      
Sbjct: 173 QIHESTIRAQGVEIERRASANSLLTMAEQIAQVGHWRLNFASGQPIYSESLLRIAGLDAA 232

Query: 241 ------SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294
                   L +     D            +       +  F   +              +
Sbjct: 233 APAARHPGLAQLCHPADRGRVEAIIAAAIAGGQDFEVETRFVRPDKTIRDVMVRGTCKTD 292

Query: 295 NSKESFEYLSH----RNHPSLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSF 348
            +  +           +   + A     E       D  P+  +      G   Y N  F
Sbjct: 293 EAGRTIGLFGILMDVTDRVQIRAEMRRSEMRYRSLADALPLLVWTVDPDSGEATYVNTRF 352

Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
                         A  +  L                  ++         RL     +  
Sbjct: 353 EDYYGP------IGAARVQRLARNHPDDAPAMEAAWQAAQASGQGYDGQWRLQA--RDGS 404

Query: 409 -NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
                M+  P   A          G   +  +    +  +E     L   LE    G   
Sbjct: 405 YRWHKMSITPIRNAGDPAGITEWIGTALDIDEIVSARLAVEDTSRLLGIALEGAEAGTFD 464

Query: 468 INREGIILSTNRAVSKLFGYP----VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
            N    I   +    +L+G P       +    +T  +  +      + +   +    R 
Sbjct: 465 WNLRTGITVLSPESVRLYGLPETGEPRALSPTEWTATIHPDDVVEAWNRIHHAVDSRSRF 524

Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSSCY--SLTMHDISEWKQEKNKLSHAKK----- 576
             E         ++ L              Y       DI+E K  +  L  A       
Sbjct: 525 IAEYRV-----GQRWLYTSGRTLYEGDGRPYRMLGLHLDITERKAAEAALRAATAEARAA 579

Query: 577 --IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
              AE+ S+ KS+FLA +SHEIRTPL  I+G+++++ ++R     + R       I  SG
Sbjct: 580 TVEAERASAAKSEFLAAMSHEIRTPLNGILGYADLLLDRRDHDPEDQRR---LELIRVSG 636

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
             +L +VND+LD+SKIE+G++ L   P +L + + + +++++  A +  + +      ++
Sbjct: 637 ESLLTVVNDVLDVSKIEAGQLELDPLPFALGKLIEDTVAIMRGTALKSALTVEARIDPDL 696

Query: 695 P-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN---------EEVILRVRDT 744
           P  ++ D   ++Q+  N+L+NA+ FTP+G  ++++  +  +         E +   + DT
Sbjct: 697 PASVVGDANRLRQVLFNLLNNAVKFTPAGS-VVLTARYEGSVPGADGGTAEALRFEISDT 755

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G+   +  +  KPF Q+  S   R  G+GLGL +   +V    G   + S    G+  
Sbjct: 756 GIGIAPSQRHRLFKPFSQVDGSISRRFGGSGLGLAICHRLVTMMGGAIGVESREGAGSTF 815

Query: 805 EIIFPLYDTSHP 816
                L   + P
Sbjct: 816 WFTLALPRATTP 827


>gi|218530077|ref|YP_002420893.1| multi-sensor hybrid histidine kinase [Methylobacterium
           chloromethanicum CM4]
 gi|218522380|gb|ACK82965.1| multi-sensor hybrid histidine kinase [Methylobacterium
           chloromethanicum CM4]
          Length = 1125

 Score =  328 bits (841), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 125/732 (17%), Positives = 239/732 (32%), Gaps = 56/732 (7%)

Query: 123 DILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFG 182
             L + P   +G L    +     T        +L   +  A + +   N  F+  R   
Sbjct: 114 APLILRPGVRLGSLCLADSQPRDFTPEDAAALRDLAEIVT-AQMRLRRDNLAFASERALR 172

Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS- 241
            +H + +      + +R           +       +  +           LR+    + 
Sbjct: 173 QIHESTIRAQGVEIERRASANSLLTMAEQIAQVGHWRLNFASGQPIYSESLLRIAGLDAA 232

Query: 242 -------SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294
                   L +     D            +       +  F   +              +
Sbjct: 233 APTTRHPGLAQLCHPADRGRVEAIIAAAIAGGQDFEVETRFVRPDKTIRDVMVRGTCKTD 292

Query: 295 NSKESFEYLSH----RNHPSLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSF 348
            +  +           +   + A     E       D  P+  +      G   Y N  F
Sbjct: 293 EAGRTIGLFGILMDVTDRVQIRAEMRRSEMRYRSLADALPLLVWTVDPDSGEATYVNTRF 352

Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
                         A  +  L                  ++         RL     +  
Sbjct: 353 EDYYGP------IGAARVQRLARNHPDDAPAMEAAWQAAQASGQGYDGQWRLQA--RDGS 404

Query: 409 -NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
                M+  P   A          G   +  +    +  +E     L   LE    G   
Sbjct: 405 YRWHKMSITPIRNAGDPAGITEWIGTALDIDEIVSARLAVEDTSRLLGIALEGAEAGTFD 464

Query: 468 INREGIILSTNRAVSKLFGYP----VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
            N    I   +    +L+G P       +    +T  +  +      + +   +    R 
Sbjct: 465 WNLRTGITVLSPESVRLYGLPETGEPRALSPTEWTATIHPDDVVEAWNRIHHAVDSRSRF 524

Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSSCY--SLTMHDISEWKQEKNKLSHAKK----- 576
             E         ++ L              Y       DI+E K  +  L  A       
Sbjct: 525 IAEYRV-----GQRWLYTSGRTLYEGDGRPYRMLGLHLDITERKAAEAALRAATAEARAA 579

Query: 577 --IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
              AE+ S+ KS+FLA +SHEIRTPL  I+G+++++ ++R     + R       I  SG
Sbjct: 580 TVEAERASAAKSEFLAAMSHEIRTPLNGILGYADLLLDRRDHDPEDQRR---LELIRVSG 636

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
             +L +VND+LD+SKIE+G++ L   P +L + + + +++++  A +  + +      ++
Sbjct: 637 ESLLTVVNDVLDVSKIEAGQLELDPLPFALGKLIEDTVAIMRGTALKSALTVEARIDPDL 696

Query: 695 P-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN---------EEVILRVRDT 744
           P  ++ D   ++Q+  N+L+NA+ FTP+G  ++++  +  +         E +   + DT
Sbjct: 697 PASVVGDANRLRQVLFNLLNNAVKFTPAGS-VVLTARYEGSVPGADGGTAEALRFEISDT 755

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G+   +  +  KPF Q+  S   R  G+GLGL +   +V    G   + S    G+  
Sbjct: 756 GIGIAPSQRHRLFKPFSQVDGSISRRFGGSGLGLAICHRLVTMMGGAIGVESREGAGSTF 815

Query: 805 EIIFPLYDTSHP 816
                L   + P
Sbjct: 816 WFTLALPRATTP 827


>gi|15964778|ref|NP_385131.1| putative sensor histidine kinase transmembrane protein
           [Sinorhizobium meliloti 1021]
 gi|15073956|emb|CAC45597.1| Putative sensor histidine kinase transmembrane protein
           [Sinorhizobium meliloti 1021]
          Length = 772

 Score =  328 bits (841), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 117/658 (17%), Positives = 241/658 (36%), Gaps = 51/658 (7%)

Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA 248
              D       + +        + G   + +    I  + +   +      V   +    
Sbjct: 126 EILDAGIFLLTVRRDGRVFAGTQDGVHLIGRTLSAIAPEVATLQYYGEGASVVRASIDGT 185

Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
                L+           ++   + +    +        + G         + Y      
Sbjct: 186 EHFIALRQLPDSGGAVLAATSIARFEAAWRDEISLNVTLFAGVSAILMVVLYAYYIQAKR 245

Query: 309 PS-LSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGL 366
                A F E        + +     + +       + + S   +   +    +   G  
Sbjct: 246 TRDADAVFAESNLRVETALSRGRCGLWDFDLDNRRLFWSRSMYEMLGMQGDASVLSFGDA 305

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
           + L+           + +   + +   I    ++  ++    + + +             
Sbjct: 306 ARLMHVEDRGIYRVARAI--AKGNERQID---QVFRMRHADGHYVWLRARAQVIRTVSGR 360

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
                GI  +  +     ++      +L   +E TS+   + ++   ++  N    + + 
Sbjct: 361 -THLIGIAMDVTEQHRLAQRYAEADQRLADAIECTSEAFVLWDKHDRLVMCNTHYQQAWQ 419

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
            P   ++       +     +     +   ++   R    + +     +E+ L +     
Sbjct: 420 LPDHVLVPGTERTIVH---AAAARPVVERRIADPDRSNHSQTSEVQLADERWLQINERRT 476

Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSH--------------------------------- 573
           +            DI+  K+ + +L                                   
Sbjct: 477 R---DGGLVSVGTDITLLKRHQVRLRESERRLMATIGDLSASRVTLEQQKAELSIANANY 533

Query: 574 --AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
              K+ AE  +  KS+FLA +SHE+RTPL AI+GFSE++++Q FGPLG+ +Y EY+  I 
Sbjct: 534 QAEKERAEAANRAKSEFLANMSHELRTPLNAILGFSEILQDQMFGPLGSEKYHEYSRDIF 593

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
            SG  +L+++ND+LD+SKIE+G M +  E + L   + E +    + A  K I +    +
Sbjct: 594 ESGKHLLNVINDILDMSKIEAGHMRITRERIDLAPLIEETLRFTTIPAERKNIRVVQQIS 653

Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751
           + +  + AD R++KQ+ LN+LSNA+ FT  GG+I +         V L + D+G+G+   
Sbjct: 654 SGL-TMFADRRAMKQVLLNLLSNAVKFTNEGGRISLRARKV-RGAVTLTIADSGIGIPKG 711

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            L+K  +PF Q+ +       G+GLGL +++++   + G   I S    GT+I +  P
Sbjct: 712 ALQKIGQPFEQVQSQYAKSKGGSGLGLAISRSLTRLHGGTMKIHSAENVGTIISVRIP 769



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/398 (9%), Positives = 100/398 (25%), Gaps = 21/398 (5%)

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
            D +     E +           +    +         ++  ++ E    +   +    +
Sbjct: 2   ADARRGSAAEGRLRLKFPGFSGLEREFIEQAKIFAEPASQKLAMAEPMLKRSIPVLIIAF 61

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
            L+ +        ++   +  +                ++                   E
Sbjct: 62  LLIVAISRMSGIMDEHARMEASSRRTVSLAAAAAAGVFQTGGSELFAEGRRWEVERRLTE 121

Query: 320 NLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
            L  E +D       V   G +F      + L              L    +   +   +
Sbjct: 122 FLPAEILDAGIFLLTVRRDGRVFAGTQDGVHLIGRTLSAIAPEVATLQYYGEGASVVRAS 181

Query: 380 AIKP---VMLYRSDRTCIAASARLHTIQ----WNRENSLAMTFIPFEKA--NQFPENMPQ 430
                  + L +   +  A  A     +    W  E SL +T      A           
Sbjct: 182 IDGTEHFIALRQLPDSGGAVLAATSIARFEAAWRDEISLNVTLFAGVSAILMVVLYAYYI 241

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490
                 D D    +  + +E     + L     G+   + +   L  +R++ ++ G   +
Sbjct: 242 QAKRTRDADAVFAESNLRVE-----TALSRGRCGLWDFDLDNRRLFWSRSMYEMLGMQGD 296

Query: 491 D--ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
              +        +      +    +   ++    + ++++      +   + LR   + +
Sbjct: 297 ASVLSFGDAARLMHVEDRGIYR--VARAIAKGNERQIDQVFRMRHADGHYVWLRARAQVI 354

Query: 549 PFSSC---YSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
              S          D++E  +   + + A +       
Sbjct: 355 RTVSGRTHLIGIAMDVTEQHRLAQRYAEADQRLADAIE 392



 Score = 45.4 bits (106), Expect = 0.036,   Method: Composition-based stats.
 Identities = 30/378 (7%), Positives = 87/378 (23%), Gaps = 15/378 (3%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN--HIGDLLKRQNTW 143
            W+ D        S  + + +G      + +   D + ++H++      +   + + N  
Sbjct: 271 LWDFDLDNRRLFWSRSMYEMLGMQGDASV-LSFGDAARLMHVEDRGIYRVARAIAKGNER 329

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                         YV +   A  I + +         GI       +         D++
Sbjct: 330 QIDQVFRMRHADGHYVWLRARAQVIRTVSGR---THLIGIAMDVTEQHRLAQRYAEADQR 386

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL-RMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
            +   E       +  +   +    +      ++ + V                      
Sbjct: 387 LADAIECTSEAFVLWDKHDRLVMCNTHYQQAWQLPDHVLVPGTERTIVHAAAARPVVERR 446

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
            ++       +       ++   +      ++    S                +    L 
Sbjct: 447 IADPDRSNHSQTSEVQLADERWLQINERRTRDGGLVSVGTDITLLKRHQVRLRESERRLM 506

Query: 323 PETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
               D              L  AN ++    +     +   +  L+ +    +   N  +
Sbjct: 507 ATIGDLSASRVTLEQQKAELSIANANYQAEKERAEAANRAKSEFLANMSHELRTPLNAIL 566

Query: 382 KPVMLYRSD--RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
               + +        +     ++          +  I         E             
Sbjct: 567 GFSEILQDQMFGPLGSEKYHEYSRDIFESGKHLLNVINDILDMSKIEAGHM-----RITR 621

Query: 440 TRINKRKMEIEVMQLCSI 457
            RI+   +  E ++  +I
Sbjct: 622 ERIDLAPLIEETLRFTTI 639


>gi|27364012|ref|NP_759540.1| aerobic respiration control sensor protein ArcB [Vibrio vulnificus
           CMCP6]
 gi|27360129|gb|AAO09067.1| Aerobic respiration control sensor protein arcB [Vibrio vulnificus
           CMCP6]
          Length = 780

 Score =  328 bits (841), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 90/391 (23%), Positives = 175/391 (44%), Gaps = 19/391 (4%)

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
            +E E       + ++      L S ++A+ D I   N EG+    NRA+ +L G     
Sbjct: 135 DLENEVFQRERTQVELAERTALLRSFIDASPDLIYYRNAEGVFSGCNRAMEELTGKKEHQ 194

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
           ++         +     +     ++ + +   T E+        +    LR +       
Sbjct: 195 LVGLSPWDVYSKEVAQQIVDTDQQVFANNRALTYEQWLEYPDGRKHYFELRKVPFYSKDG 254

Query: 552 S--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                     DI+E K+ +  L       EK S  K+ F++ +SHE+RTPL  I+G S +
Sbjct: 255 RHLGLVGFGRDITERKRHEESL-------EKASRDKTTFISTISHELRTPLNGIVGLSRM 307

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           + + R          +Y   I+ S   + +I ND++D+ K +  K+ L   P++ ++ V+
Sbjct: 308 LLDTRL----TDEQRKYMQTINVSAITLGNIFNDIIDMDKFDRRKLELLPAPLNFEDFVA 363

Query: 670 EAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI-II 727
           E  S+  L A +K +       + +P+ I  D   ++Q+  N++SNA+ FT  GG +  +
Sbjct: 364 EIESISALMAEQKGLRFDLERLSELPKAIEVDATRLRQVIWNLISNAMKFTKEGGVVMTV 423

Query: 728 STTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGEGTGLGLPLAKAMV 785
           S+    +   +I+ V DTG+G+   EL+K    + Q+ + +      GTG+GL +++ ++
Sbjct: 424 SSEVEEDFATIIIEVEDTGIGIPEAELDKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLI 483

Query: 786 DANMGKFYIFSTPAKGTLIEIIF--PLYDTS 814
           +   G   + S    G+   I    P+ +++
Sbjct: 484 NMMDGDITVSSEEGFGSTFTISIHVPVIESA 514



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/240 (12%), Positives = 63/240 (26%), Gaps = 24/240 (10%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTT 148
           +A G     +  + +  G    +++G+   DV          +    +         +  
Sbjct: 172 NAEGVFSGCNRAMEELTGKKEHQLVGLSPWDVYSKEVAQQIVDTDQQVFANNRALTYEQW 231

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           L   +G       +L  +P YS++    G  GFG               ++  +  +   
Sbjct: 232 LEYPDGR--KHYFELRKVPFYSKDGRHLGLVGFG--RDITERKRHEESLEKASRDKTTFI 287

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY----------------AHKDD 252
                          I          R+ ++     +                    K D
Sbjct: 288 STISHELRT--PLNGIVGLSRMLLDTRLTDEQRKYMQTINVSAITLGNIFNDIIDMDKFD 345

Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
             K E  P   + E  + E E    +   Q   +     L +   ++ E  + R    + 
Sbjct: 346 RRKLELLPAPLNFEDFVAEIESISALMAEQKGLRFDLERL-SELPKAIEVDATRLRQVIW 404


>gi|332140272|ref|YP_004426010.1| multi-sensor hybrid histidine kinase [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327550294|gb|AEA97012.1| multi-sensor hybrid histidine kinase [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 959

 Score =  328 bits (841), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 107/561 (19%), Positives = 207/561 (36%), Gaps = 40/561 (7%)

Query: 275 FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF 334
            H +++     ++    L  + K S    S+           +  +   +  DK      
Sbjct: 267 LHMVSMTGTLAERTLSKLYEDIKNSLNSNSNAPLRDDQQLEAQELSDIRKAFDKL----- 321

Query: 335 VYSHGNLFYANPSFLLLT---------KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
           ++    +  +N  F  +            ++ + +          D         +K +M
Sbjct: 322 IWDLTEVSLSNEQFSNVLESMGDMLVVVDQNQEVLLSNKRFDDFCDDQYGEKQGILKFIM 381

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
             +      +   +  ++         + +     A+          +  ++ + R    
Sbjct: 382 --QKLGATQSNELKHFSVST--GQERFVRWTKTSLADANGNIRGDIFVGSDETEQRS--- 434

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGI---ILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            +E  V  L   ++  +  I I + + +   I+  N A  +L GY  E+I+         
Sbjct: 435 -LESHVKVLTHAMDEATVSIIISDIKRVGQPIIYANSAFEELTGYTREEIIGHNCRSMQG 493

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL--SLRIIIKKLPFS-SCYSLTMH 559
           + T       + + ++      +E   L   K+       L +   K     + Y     
Sbjct: 494 EETKEKTIDCIRKAIATREP--IETTLLNYKKDGTKFFNRLNLTPVKTNGEITHYIGFQQ 551

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           D+++ +Q +  L  A++ AE+ +  KS FLA +SHEIRTP+  I G  +++     G   
Sbjct: 552 DVTQQRQTEQYLQEAREKAEESARLKSSFLASMSHEIRTPIHGISGVLQLL----GGSEL 607

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
                 Y +    S   +L IVND+LD SKIE+G++ +   P  + E++    S   +  
Sbjct: 608 TGEQKHYLSLAKFSIQGLLHIVNDILDFSKIEAGQLQIEESPFDILESLENLQSQYAILC 667

Query: 680 NEKRILIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT--SNEE 736
            EK + +   F       +  D    +QI  N+L NA+ FT +G  I ++T      +  
Sbjct: 668 QEKGLELHFHFDLQGYHVVQGDDVRFRQILSNLLGNAVKFTDTG-YIEVTTCIEKNPDNT 726

Query: 737 VIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
           + L   V+DTG+G+   +       F Q   S   +  GTGLGL ++K +     G   +
Sbjct: 727 LRLLCSVKDTGIGIAQDKQSTIFDVFTQEDLSTTRKFGGTGLGLSISKQLCGLMGGDIKL 786

Query: 795 FSTPAKGTLIEIIFPLYDTSH 815
            S    G+       L +   
Sbjct: 787 ESVKGNGSTFSFTIQLEEADE 807



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/132 (10%), Positives = 36/132 (27%), Gaps = 6/132 (4%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGKTTLWPIE 153
           +   +    +  G    ++IG     +      +   + I   +  +         +  +
Sbjct: 465 IIYANSAFEELTGYTREEIIGHNCRSMQGEETKEKTIDCIRKAIATREPIETTLLNYKKD 524

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
           GT  +    L   P+ + N E + + GF                +   +K      +K  
Sbjct: 525 GTKFFNR--LNLTPVKT-NGEITHYIGFQ--QDVTQQRQTEQYLQEAREKAEESARLKSS 579

Query: 214 HSSVEKEKYDIF 225
             +    +    
Sbjct: 580 FLASMSHEIRTP 591


>gi|172058878|ref|YP_001815338.1| PAS/PAC sensor signal transduction histidine kinase
           [Exiguobacterium sibiricum 255-15]
 gi|171991399|gb|ACB62321.1| PAS/PAC sensor signal transduction histidine kinase
           [Exiguobacterium sibiricum 255-15]
          Length = 714

 Score =  328 bits (841), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 122/682 (17%), Positives = 244/682 (35%), Gaps = 57/682 (8%)

Query: 146 KTTLWPIEGTNLYV--PIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
           + TL+PI      V  P  L   P+   +      +   +  +     D   L    D +
Sbjct: 60  EDTLFPISSRIQVVSLPYTLTISPVEQTDFFLVTIKSLDLHQLLNSTIDAAILVTDPDFR 119

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
            + ++E       V+         Q   P      +   L + +  + ++       +L 
Sbjct: 120 ITAINETAGTMFGVDPAAL----PQEMTPISIHDPEEFQLRKQHLEQLNLKNLSDEDILL 175

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
                      +H  + + +  + Y   LQN            +   +  +  + E    
Sbjct: 176 LHGRDTENDWTYHRTDGSYFYGRLYMTRLQN-GGFFLFITDISSQKQVELHLAKSERRFR 234

Query: 324 ETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
              +        + +G +  AN +  ++ +   ++ ++    L  +              
Sbjct: 235 LIAESVLEAVIFHDNGVILDANRAAEIIFR-TRLELMKGHQILDFI-------QPEFQNS 286

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
           V                   +     S+ +   P E   +         +  +  + +  
Sbjct: 287 VTQRIMKHHEEPYEVIG---RRADGTSVEIEVFPREITYEKTRMR--VDVVRDMTEQKKI 341

Query: 444 KRKMEIEVMQL-------CSILEATSDGIAIINREGIILSTNRAVSKLF---GYPVEDIL 493
           ++ +E E   +        SIL+A+++G  +   +G     N    KL    G     I 
Sbjct: 342 EKMLEREKNAIMRQRDITQSILQASNEGFLLTGEDGSFTYMNVKARKLLDVPGIAPSKIQ 401

Query: 494 RK-PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS--TKEEKLLSLRIIIKKLPF 550
            +      L+  T   M   + E+L+    +   + TL                  K   
Sbjct: 402 ERISMIPNLDLATRYAMLQQVEELLAGKHSEISFRFTLQQPDESGHHYFEFYATSIKKER 461

Query: 551 SS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
           S      +     D +E ++                  K + ++ VSHE+RTPL++I+GF
Sbjct: 462 SRFSRHGFLFVFRDRTEEQKM--------------DHVKDELISTVSHELRTPLSSILGF 507

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
            E+++ ++  P    +   Y   +      + +++ND LDI ++E GK +  F+P SL +
Sbjct: 508 MELLRYRQPTP---EKTTRYVEIVHEEAKRLTNLLNDFLDIQRMEGGKQDYAFKPFSLRQ 564

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726
            + E I      A      I     ++   I AD   VKQ+ +N+LSNAI ++P+   I 
Sbjct: 565 LLEETIETFGETAETH--TIHAVTDDDPILIFADEDKVKQVIINLLSNAIKYSPAADHID 622

Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
           +    T++ + IL V D G+G+     +K    F ++ NS   +  GTGLGL + K +++
Sbjct: 623 VRLEKTAD-QAILSVTDYGIGIPPTAFDKLFTKFYRVDNSAVRKIGGTGLGLAICKEIIE 681

Query: 787 ANMGKFYIFSTPAKGTLIEIIF 808
           ++ G   + S   +G+   I+ 
Sbjct: 682 SHGGAISVESELNQGSTFTIVL 703



 Score = 48.5 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/380 (8%), Positives = 95/380 (25%), Gaps = 38/380 (10%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKM----------------IGMRLCDVSDILHIDPNNH 132
            D    +  I+E      G     +                +  +  +  ++ ++   + 
Sbjct: 114 TDPDFRITAINETAGTMFGVDPAALPQEMTPISIHDPEEFQLRKQHLEQLNLKNLSDEDI 173

Query: 133 IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192
           +  LL  ++T    T     +G+  Y  + +       +N  F     F  +        
Sbjct: 174 L--LLHGRDTENDWTYH-RTDGSYFYGRLYM----TRLQNGGF-----FLFITDISSQKQ 221

Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK------NKVSSLTEY 246
                 + +++F  + E              + + ++     R +      +++    + 
Sbjct: 222 VELHLAKSERRFRLIAESVLEAVIFHDNGVILDANRAAEIIFRTRLELMKGHQILDFIQP 281

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL--S 304
                   +  K+     E            I +           ++ +           
Sbjct: 282 EFQNSVTQRIMKHHEEPYEVIGRRADGTSVEIEVFPREITYEKTRMRVDVVRDMTEQKKI 341

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIA 363
            +             ++T   +      F +    G+  Y N     L     +   +I 
Sbjct: 342 EKMLEREKNAIMRQRDITQSILQASNEGFLLTGEDGSFTYMNVKARKLLDVPGIAPSKIQ 401

Query: 364 GGLSTLLDAPKLSDNNAIKPV-MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
             +S + +    +    ++ V  L     + I+    L     +  +         +K  
Sbjct: 402 ERISMIPNLDLATRYAMLQQVEELLAGKHSEISFRFTLQQPDESGHHYFEFYATSIKKER 461

Query: 423 QFPENMPQNGIEPEDVDTRI 442
                     +  +  + + 
Sbjct: 462 SRFSRHGFLFVFRDRTEEQK 481


>gi|310795325|gb|EFQ30786.1| hsp90-like protein [Glomerella graminicola M1.001]
          Length = 1390

 Score =  328 bits (841), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 112/648 (17%), Positives = 215/648 (33%), Gaps = 58/648 (8%)

Query: 212  KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271
            +   ++ + + D+   +       +    +     ++ + DV +     LL +E+     
Sbjct: 390  RAARALLRHESDL---EKSADGFDLLPSWTVYDAEFSRELDVSEYPISVLLRTEKPFSNM 446

Query: 272  QEDFHTINLNQYTKKQYFGTLQNN------SKESFEYLSHRNHPSLSAYFDEGENLTPET 325
            +      N  +         ++++      +         +    ++   +  E      
Sbjct: 447  RVGMIVENGERRVYDALGEAIRDDSTGEFLAGVVTFRDVTKMTEEITEIRERDEERFKLI 506

Query: 326  VDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
             D  P   +         + N  +   T     + + +          P   D+      
Sbjct: 507  CDTMPQLVWTTRADGYHDFFNTRWYTYTGLTPEESLGLG------WKHPFHPDDMPETTK 560

Query: 385  MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
                S +T               E    +      +  +  E     G   +  +    K
Sbjct: 561  RWRHSLKTGDPYVTEYRCRSKTGEWRWMLGRALPLRNKETGEIEKWFGTCTDVNEGIEAK 620

Query: 445  RKMEIEVMQLCSILEATSDGIAIINREGIILST--------N------RAVSKLFGYPVE 490
                    QL S+L  +   I  +N    +           N         S   G  + 
Sbjct: 621  LAARSTRQQLLSVLAHSQVTIFTVNTNLELTMLEGALIWDSNGEDSTPPHSSWFMGQNMY 680

Query: 491  DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL------RII 544
            +   +          P  +      +      +  E    G     + L +        I
Sbjct: 681  EAFNRLNPQLKTGEHPKFLRPVEDILAGGKTEEVAEHGMDGRWYRTRFLPILGKKTKEGI 740

Query: 545  IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES----------SHKSDFLARVSH 594
                         + D+SE K++   L    +  ++              KS FLA +SH
Sbjct: 741  STNETCIEGVIGVIMDVSELKEKAEGLKEESREKKQAMANEAAAKEANRLKSQFLANMSH 800

Query: 595  EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
            EIRTP+T +IG +E++++       +    EY   I RS N +L ++ND+LD SK+ESG+
Sbjct: 801  EIRTPITGVIGMAELLRDMEL----DAEQTEYVENIQRSANALLTVINDILDFSKVESGR 856

Query: 655  MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR---ILADLRSVKQIALNI 711
            +++     SL   V++   ++   A  K +  R+  +  +     ++ D   V+QI  N+
Sbjct: 857  LDIEEVQFSLSVIVTDVRKMLSFAAERKNLDFRSDISGEVENDLVVIGDPGRVRQIITNL 916

Query: 712  LSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
            L+N+I FT  G  +  S            V   V D+G+G+     +K  +PF Q   S 
Sbjct: 917  LTNSIKFTNQG-YVKFSVQKEKETSDSIVVKFIVEDSGIGIEEEVRKKLFQPFSQGDAST 975

Query: 768  QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
              +  GTGLGL + K +++   G   + ST   GT+     P      
Sbjct: 976  ARKFGGTGLGLTICKNLLELMNGNMTLESTLGNGTVATFWVPFSKPQQ 1023



 Score = 88.5 bits (218), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 58/534 (10%), Positives = 134/534 (25%), Gaps = 47/534 (8%)

Query: 94  YLKEISEELPKTIGNYAFK----------MIGMRLCDVSDILHIDPN----------NHI 133
            +   +E + + +G               + G  L  V   +  +            + +
Sbjct: 117 TVVLANEAMGRMLGMTDDALDDNSHVGERLRGQSLSQVGIDMIQEGRPVWVGWEAFLDSL 176

Query: 134 GDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193
              +  + T      L+         P   +  P     +         +V V     + 
Sbjct: 177 VVEMGARQTSKDAADLFDQGYGGEATPTPHSLAPPLLDTQPSPSTVKDAVVDVVISRKEL 236

Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253
              G     +             V   + +             ++  SSL          
Sbjct: 237 GKPGYDSRNRSGASAHQVYAKMIVTIWEIEDHQVYFTLTFTSSQSPPSSLVSGRKAVAKP 296

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
              E+    T   S+ P     H  +   +       +L ++        S   H S  +
Sbjct: 297 AILEQADRKTISNSNPPSVSSSHDSSSPSFRISPSAVSLSSSPFPPMGPPSTAAHASTPS 356

Query: 314 YFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
              +   +    +D   +P    +  G++ + N +   L +++S  D+E +     LL +
Sbjct: 357 ILQKMILMRDALLDNTTMPILAMWKDGSVTFPNRAARALLRHES--DLEKSADGFDLLPS 414

Query: 373 PKLSDNNAIKPV-----MLYRSDRTCIAA-SARLHTIQWNRENSLAMTFIPFEKANQFPE 426
             + D    + +      +    RT     + R+  I  N E  +        + +   E
Sbjct: 415 WTVYDAEFSRELDVSEYPISVLLRTEKPFSNMRVGMIVENGERRVYDALGEAIRDDSTGE 474

Query: 427 NMPQNGIEPEDVDTRINKRKMEIE-VMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
            +       +         ++      +   I +     +     +G     N       
Sbjct: 475 FLAGVVTFRDVTKMTEEITEIRERDEERFKLICDTMPQLVWTTRADGYHDFFNTRWYTYT 534

Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
           G   E+ L   +      +            L               +K  +   +    
Sbjct: 535 GLTPEESLGLGWKHPFHPDDMPETTKRWRHSLKTGDPYV--TEYRCRSKTGEWRWMLGRA 592

Query: 546 KKLPFSSC-----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
             L          +  T  D++E            +      S +   L+ ++H
Sbjct: 593 LPLRNKETGEIEKWFGTCTDVNE----------GIEAKLAARSTRQQLLSVLAH 636



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/145 (12%), Positives = 38/145 (26%), Gaps = 7/145 (4%)

Query: 70  SENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH-ID 128
            E  F         +  W   A GY    +       G    + +G+            +
Sbjct: 499 DEERFKLICDTMP-QLVWTTRADGYHDFFNTRWYTYTGLTPEESLGLGWKHPFHPDDMPE 557

Query: 129 PNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYS-RNREFSGFRGFGIVHVN 187
                   LK  + +   T       T  +  +   ALP+ +    E    + FG     
Sbjct: 558 TTKRWRHSLKTGDPY--VTEYRCRSKTGEWRWMLGRALPLRNKETGEIE--KWFGTCTDV 613

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKK 212
               + +   +   ++   +    +
Sbjct: 614 NEGIEAKLAARSTRQQLLSVLAHSQ 638


>gi|220908496|ref|YP_002483807.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7425]
 gi|219865107|gb|ACL45446.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7425]
          Length = 469

 Score =  328 bits (841), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 87/396 (21%), Positives = 179/396 (45%), Gaps = 11/396 (2%)

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
           + +  ++ ++ +    ++ +E E  +   + E   DG  + +  G +   N A + L   
Sbjct: 53  VAEEELKQQNEELMAARQSVEQERQRYQELFEFAPDGYVVTDIHGTVREANCAAAALLNL 112

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
             + ++ KP   F+           L ++    + +  E       +++      + +  
Sbjct: 113 APQYLVGKPLINFVADEQRREFRSMLLQL--QRVHRLQEWEVRLCPRQKAAFEAALTVAA 170

Query: 548 LPFSSCYSL----TMHDISEWKQEKNKLSHAKK---IAEKESSHKSDFLARVSHEIRTPL 600
           +      S+     M DI+  KQ ++ L   +       + +  K+ F+  +SHE+RTP+
Sbjct: 171 VRNHYGQSIALRWLMRDITARKQAESHLHQVQLQNLELIESNRLKNQFMGIISHELRTPM 230

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
            AI+GFS+++   RF     P+ I +   I  +   +L ++ ++L  S++++ ++ L  E
Sbjct: 231 NAILGFSDLLLR-RFHDRYEPQQIAFLERILNNAKHLLLMIEEILAYSRLKAHRLELQLE 289

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720
              L E        +Q  A++K + +      +   +  D   V+QI +N+LSNAI FT 
Sbjct: 290 AFDLLELARITAEEMQCMADQKALALELDLPPSPLVVCNDRTRVRQILVNLLSNAIKFTD 349

Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
           +G ++ ++      E++++ V+DTG+G+      +  + F Q+  SQ     GTGLGL +
Sbjct: 350 TG-RVTLAIAPGKAEKLLITVQDTGIGIDPAHQGRIFQEFWQVNQSQTRSQGGTGLGLSI 408

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
             ++V    GK ++ S   +G +  I  P    S P
Sbjct: 409 TSSLVTLMQGKIWVESELGEGAVFRIELPRNVPSPP 444


>gi|150389840|ref|YP_001319889.1| PAS/PAC sensor hybrid histidine kinase [Alkaliphilus
           metalliredigens QYMF]
 gi|149949702|gb|ABR48230.1| PAS/PAC sensor hybrid histidine kinase [Alkaliphilus
           metalliredigens QYMF]
          Length = 773

 Score =  328 bits (841), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 102/541 (18%), Positives = 207/541 (38%), Gaps = 31/541 (5%)

Query: 285 KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFY 343
                 +  +  +     +S     S      +   +   ++D        ++    +  
Sbjct: 94  FPVEVRSRYSGEQSKGNVVSIIRDISHIDKIAKDAEMFSVSLDILDDAIVTFTKDLKVSL 153

Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403
            + +      Y   + +        +L   +       +   + + +      + RLH  
Sbjct: 154 WSKAAEEKLGYTKEEIVGQNI---KILVPNEKIKEFENEIFEVRKGNVVERLETIRLH-- 208

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
                N++ ++       +     +   G+  +    +   ++++    +    LE    
Sbjct: 209 --KNGNAIDVSISVSPFYDPDGVLIGVLGVYKDISQRKELAKQLKRNEERWRYALEGGRF 266

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDI--LRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
           GI   + E   + +     ++ GY   ++    + +   +       +   L +  S   
Sbjct: 267 GIWDWDIENNKIFSADLWKEILGYNEGELNDTYEDWMSKVHPEDFPYVKDKLNK-HSRGE 325

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHA---- 574
           +   E          K L  +  I +            T+ DI++ K  + +L       
Sbjct: 326 KYIDEFRMKCKDNTYKYLRAKGQIIEWREDGNPLRMMGTLEDITDRKIIEEELKEKYKQL 385

Query: 575 ---KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
              K+ AE  +  KS FLA +SHEIRTP+  I G  +++++   G        +Y N + 
Sbjct: 386 ELLKEEAENANKAKSQFLANMSHEIRTPMNGIFGVVQLLESTDVGA----EQNKYINMLK 441

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
            S + +  I+ND+LDISKIESG   L+ EP +L E +S     + +  N K + +     
Sbjct: 442 ESTHTLAGIINDILDISKIESGTFKLNNEPFNLTEMISSIYHGLLVDGNAKGLEVGYYLD 501

Query: 692 NNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH----TSNEEVILRVRDTGV 746
            NI P+++ D   +KQI  N++SNA+ +T  G  +             E++   V+D+G+
Sbjct: 502 PNINPQVIGDELKLKQILTNLISNAVKYTEQGF-VSFRVNRISFDEHTEKIQFNVKDSGI 560

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+ +   EK  + F Q  +S + + +GTGLGL ++K +     G     S   +G++   
Sbjct: 561 GIKDGFKEKIFEDFSQEDSSTRKKYQGTGLGLAISKNLALLMQGDISFESKLGEGSIFTF 620

Query: 807 I 807
            
Sbjct: 621 T 621



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/137 (15%), Positives = 43/137 (31%), Gaps = 6/137 (4%)

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
             ++LE   D I I+++ G I+  N+   + +GY  E+++         Q+    +   L
Sbjct: 13  YKNVLEDLMDIILIVDKNGKIVYGNKRAVETYGYTYEELVNLSVFDLRNQDIEEPVQEQL 72

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKL 571
            + L       +E  T    K      + +  +             + DIS   +     
Sbjct: 73  KQALLRG----IEFKTYHYKKNGTKFPVEVRSRYSGEQSKGNVVSIIRDISHIDKIAKDA 128

Query: 572 SHAKKIAEKESSHKSDF 588
                  +        F
Sbjct: 129 EMFSVSLDILDDAIVTF 145



 Score = 55.0 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 38/379 (10%), Positives = 107/379 (28%), Gaps = 27/379 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147
           +D +G +   ++   +T G    +++ + + D+ +    +P    +   L R   +  KT
Sbjct: 27  VDKNGKIVYGNKRAVETYGYTYEELVNLSVFDLRNQDIEEPVQEQLKQALLRGIEF--KT 84

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFG-IVHVNRVDNDPRALGKRLDKKFSH 206
             +   GT   V +             +SG +  G +V + R  +    + K  +     
Sbjct: 85  YHYKKNGTKFPVEVR----------SRYSGEQSKGNVVSIIRDISHIDKIAKDAEMFSVS 134

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLR-MKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
           L  +     +  K+       ++    L   K ++          ++ +K  +  +    
Sbjct: 135 LDILDDAIVTFTKDLKVSLWSKAAEEKLGYTKEEIVGQNIKILVPNEKIKEFENEIFEVR 194

Query: 266 ESSLPEQEDFHTI--NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
           + ++ E+ +   +  N N            +        L      S      +      
Sbjct: 195 KGNVVERLETIRLHKNGNAIDVSISVSPFYDPDGVLIGVLGVYKDISQRKELAKQLKRNE 254

Query: 324 E----TVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
           E     ++      + +    N  ++   +  +  Y   +  +            K+   
Sbjct: 255 ERWRYALEGGRFGIWDWDIENNKIFSADLWKEILGYNEGELNDTYEDW-----MSKVHPE 309

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
           +                          +             +  +    +   G   +  
Sbjct: 310 DFPYVKDKLNKHSRGEKYIDEFRMKCKDNTYKYLRAKGQIIEWREDGNPLRMMGTLEDIT 369

Query: 439 DTRINKRKMEIEVMQLCSI 457
           D +I + +++ +  QL  +
Sbjct: 370 DRKIIEEELKEKYKQLELL 388


>gi|328472027|gb|EGF42904.1| aerobic respiration control sensor protein ArcB [Vibrio
           parahaemolyticus 10329]
          Length = 783

 Score =  328 bits (841), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 89/406 (21%), Positives = 174/406 (42%), Gaps = 19/406 (4%)

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
               +         +E E       + ++      L S ++A+ D I   N +G+    N
Sbjct: 122 RIKAEEAREEAMQDLENEVFQRERTQLELAERTALLRSFIDASPDLIYYRNADGVFSGCN 181

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
           RA+ +L G     ++         +     +     ++ S +   T E+        +  
Sbjct: 182 RAMEELTGKKEHQLVGLSPWDVYSKEIAQPIVDTDQKVFSDNQAITYEQWLEYPDGRKHY 241

Query: 539 LSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
             LR +                 DI+E K+ +  L       EK S  K+ F++ +SHE+
Sbjct: 242 FELRKVPFYSKDGRHLGLVGFGRDITERKRHEESL-------EKASRDKTTFISTISHEL 294

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTPL  I+G S ++ +            ++   I+ S   + +I ND++D+ K +  K+ 
Sbjct: 295 RTPLNGIVGLSRMLLDSPL----TEEQRKHMQTINVSAITLGNIFNDIIDMDKFDRRKLE 350

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNA 715
           L   P++ ++ V+E  S+  L A +K +       +++P+ I  D   ++Q+  N++SNA
Sbjct: 351 LLPAPLNFEDFVAEIESISALMAEQKGLRFDLERLSDLPKAIEVDATRLRQVIWNLVSNA 410

Query: 716 IHFTPSGGQI-IISTTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGE 772
           + FT  GG +  +S     +   +I+ V DTG+G+   EL+K    + Q+ + +      
Sbjct: 411 MKFTKEGGVVMTVSADVEEDFATIIMEVEDTGIGIPEAELDKIFAMYYQVKSGKDNLHAV 470

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF--PLYDTSHP 816
           GTG+GL ++K +++   G   + S    G+   +    P+ +   P
Sbjct: 471 GTGIGLAVSKQLINMMDGDITVTSEEGFGSTFTVSIHVPIVELEEP 516



 Score = 48.5 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/185 (11%), Positives = 48/185 (25%), Gaps = 6/185 (3%)

Query: 34  FETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHG 93
            E E+  K     +   Q    +  Q   +     +                 +  +A G
Sbjct: 117 LEIEERIKAEEAREEAMQDLENEVFQRERTQLELAERTALLRSFIDASPDLIYYR-NADG 175

Query: 94  YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPI 152
                +  + +  G    +++G+   DV       P  +    +         +  L   
Sbjct: 176 VFSGCNRAMEELTGKKEHQLVGLSPWDVYSKEIAQPIVDTDQKVFSDNQAITYEQWLEYP 235

Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212
           +G       +L  +P YS++    G  GFG               ++  +  +       
Sbjct: 236 DGR--KHYFELRKVPFYSKDGRHLGLVGFG--RDITERKRHEESLEKASRDKTTFISTIS 291

Query: 213 GHSSV 217
                
Sbjct: 292 HELRT 296


>gi|320157394|ref|YP_004189773.1| aerobic respiration control sensor protein arcB [Vibrio vulnificus
           MO6-24/O]
 gi|319932706|gb|ADV87570.1| aerobic respiration control sensor protein ArcB [Vibrio vulnificus
           MO6-24/O]
          Length = 780

 Score =  328 bits (841), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 90/391 (23%), Positives = 175/391 (44%), Gaps = 19/391 (4%)

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
            +E E       + ++      L S ++A+ D I   N EG+    NRA+ +L G     
Sbjct: 135 DLENEVFQRERTQVELAERTALLRSFIDASPDLIYYRNAEGVFSGCNRAMEELTGKKEHQ 194

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
           ++         +     +     ++ + +   T E+        +    LR +       
Sbjct: 195 LVGLSPWDVYSKEVAQQIVDTDQQVFANNRALTYEQWLEYPDGRKHYFELRKVPFYSKDG 254

Query: 552 S--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                     DI+E K+ +  L       EK S  K+ F++ +SHE+RTPL  I+G S +
Sbjct: 255 RHLGLVGFGRDITERKRHEESL-------EKASRDKTTFISTISHELRTPLNGIVGLSRM 307

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           + + R          +Y   I+ S   + +I ND++D+ K +  K+ L   P++ ++ V+
Sbjct: 308 LLDTRL----TDEQRKYMQTINVSAITLGNIFNDIIDMDKFDRRKLELLPAPLNFEDFVA 363

Query: 670 EAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI-II 727
           E  S+  L A +K +       + +P+ I  D   ++Q+  N++SNA+ FT  GG +  +
Sbjct: 364 EIESISALMAEQKGLRFDLERLSELPKAIEVDATRLRQVIWNLISNAMKFTKEGGVVMTV 423

Query: 728 STTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGEGTGLGLPLAKAMV 785
           S+    +   +I+ V DTG+G+   EL+K    + Q+ + +      GTG+GL +++ ++
Sbjct: 424 SSEVEEDFATIIIEVEDTGIGIPEAELDKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLI 483

Query: 786 DANMGKFYIFSTPAKGTLIEIIF--PLYDTS 814
           +   G   + S    G+   I    P+ +++
Sbjct: 484 NMMDGDITVSSEEGFGSTFTISIHVPVIESA 514



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/129 (12%), Positives = 36/129 (27%), Gaps = 5/129 (3%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTT 148
           +A G     +  + +  G    +++G+   DV          +    +         +  
Sbjct: 172 NAEGVFSGCNRAMEELTGKKEHQLVGLSPWDVYSKEVAQQIVDTDQQVFANNRALTYEQW 231

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           L   +G       +L  +P YS++    G  GFG               ++  +  +   
Sbjct: 232 LEYPDGR--KHYFELRKVPFYSKDGRHLGLVGFG--RDITERKRHEESLEKASRDKTTFI 287

Query: 209 EIKKGHSSV 217
                    
Sbjct: 288 STISHELRT 296


>gi|309780589|ref|ZP_07675335.1| response regulator/sensor histidine kinase [Ralstonia sp. 5_7_47FAA]
 gi|308920639|gb|EFP66290.1| response regulator/sensor histidine kinase [Ralstonia sp. 5_7_47FAA]
          Length = 1437

 Score =  328 bits (841), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 97/525 (18%), Positives = 193/525 (36%), Gaps = 30/525 (5%)

Query: 307  NHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGG 365
                      +  +     ++  P P             N +F  +        +     
Sbjct: 551  QRRRAEETLAQQLSFQRALMEAVPFPLVAKDAAQRYVAVNAAFCNMFGQPRASLLGRTPQ 610

Query: 366  LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
               L      S  + I       S+ T          I      S  + +          
Sbjct: 611  ELGLYSVSNTSPLSDINQRAAQTSESTR-----EELIIDTPDGQSRNVLYWIEPFHLPDG 665

Query: 426  ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR-----EGIILSTNRA 480
            +         +  + R  + + E    +L  + E+    +          +G I      
Sbjct: 666  QPAGTVASLVDISEIREAQARAERLEQRLREVTESLPALVYQFELPPGQVQGRITYVAGK 725

Query: 481  VSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
              +  G   +D+L       + + ++    M   +  ++S      L++     + +  +
Sbjct: 726  AYETLGVQPQDLLDYLSTPELLIHEDDRQRMLDTV--LVSAQQLTPLDQQFRHVSADGVV 783

Query: 539  LSLRIIIKKLPFSSCYSL---TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
              L         +   ++    + D++  +++ + L  AK  AE     K  FLA +SHE
Sbjct: 784  RWLHARSIPHREADGRTVWNGYLSDVTAEREQADALEAAKNAAESALHAKDRFLAMMSHE 843

Query: 596  IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
            IRTP+  ++G  E+++  +          +  + +  SG  +L I++D+LD +K+E+G++
Sbjct: 844  IRTPMNGVLGLVELLQQTKL----EGEQKQMVSLVQDSGRALLHILDDILDYAKVEAGRL 899

Query: 656  NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSN 714
            ++      L E     + L+   A+EK + +    A  +P  +  D   ++QI  N+LSN
Sbjct: 900  DISPSATDLREVFDGTVGLLASRAHEKALAMHVDVAAEVPASVSVDGIRLRQILFNLLSN 959

Query: 715  AIHFTPSGGQIIISTTHTS----NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
            AI FT +G  + +S   T        + + V DTG+G++         PF Q   S   R
Sbjct: 960  AIKFTDAGS-VRLSAKCTDVTDDTAHLAISVSDTGIGISPEVQATLFAPFVQAERSTTRR 1018

Query: 771  GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF--PLYDT 813
              GTGLGL +++ +     G+  + S P  GT + +    P+ + 
Sbjct: 1019 YGGTGLGLAISRQLAGLMGGELVMESAPGHGTAVTLRLAMPVLEA 1063



 Score = 68.1 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 39/406 (9%), Positives = 108/406 (26%), Gaps = 25/406 (6%)

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
           L   F            V+ E+  +                  L                
Sbjct: 311 LLGIFPEYQNFLSRTLGVQFERVAVRDWADALDKAANGEVDILLGMSDQDARPAGFALTQ 370

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
           P+  +    +   +      L++ + K       +       +   +     +   D   
Sbjct: 371 PIDATPLVIVGRNDALTVAALSELSGKTVALPASDTLTAILRHNVPKIRLVSAGSVDNAL 430

Query: 320 NLTPE-----TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
           ++        T+   P+   +     + +  P  L +T   +  +    G  +       
Sbjct: 431 SMVASGKADFTIVNLPVADAL-----IRHHFPGELKVTGSANTIESIGVGVSARY----- 480

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF------IPFEKANQFPENM 428
            +    I   +    +   ++   +  ++ +    S +              A      +
Sbjct: 481 AALVPLINRALFAMPEGEQVSIRNKWLSVSYQLGPSASAVLGKFGPVAALVLAALVALFI 540

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
            Q  +  E+   R  +  +  ++    +++EA    +   +     ++ N A   +FG P
Sbjct: 541 KQMQLRRENHQRRRAEETLAQQLSFQRALMEAVPFPLVAKDAAQRYVAVNAAFCNMFGQP 600

Query: 489 VEDILRKPFTV--FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
              +L +          +  S ++               E I      + + +   I   
Sbjct: 601 RASLLGRTPQELGLYSVSNTSPLSDINQRAAQTSESTREELIIDTPDGQSRNVLYWIEPF 660

Query: 547 KLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
            LP         ++ DISE ++ + +    ++   + +      + 
Sbjct: 661 HLPDGQPAGTVASLVDISEIREAQARAERLEQRLREVTESLPALVY 706



 Score = 55.4 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/301 (9%), Positives = 80/301 (26%), Gaps = 21/301 (6%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS--DILHIDPNNHI-GDLLKRQNTWYGK 146
           DA      ++       G     ++G    ++    + +  P + I     +   +   +
Sbjct: 581 DAAQRYVAVNAAFCNMFGQPRASLLGRTPQELGLYSVSNTSPLSDINQRAAQTSESTREE 640

Query: 147 TTLWPIEGTNLYV--PIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP-RALGKRLDKK 203
             +   +G +  V   I+   LP        +       +   +   +      + + + 
Sbjct: 641 LIIDTPDGQSRNVLYWIEPFHLPDGQPAGTVASLVDISEIREAQARAERLEQRLREVTES 700

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL---TEYYAHKDDVLKTEKYP 260
              L    +      + +    + ++          +       E   H+DD  +     
Sbjct: 701 LPALVYQFELPPGQVQGRITYVAGKAYETLGVQPQDLLDYLSTPELLIHEDDRQRMLDTV 760

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
           L+++++ +  +Q+  H                   +     +  + +  +      +   
Sbjct: 761 LVSAQQLTPLDQQFRHVSADGVVRWLHARSIPHREADGRTVWNGYLSDVTAEREQADALE 820

Query: 321 LTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
                 +               +A   FL +  ++    +    GL  LL   KL     
Sbjct: 821 AAKNAAESA------------LHAKDRFLAMMSHEIRTPMNGVLGLVELLQQTKLEGEQK 868

Query: 381 I 381
            
Sbjct: 869 Q 869


>gi|186686850|ref|YP_001870043.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186469202|gb|ACC85002.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 835

 Score =  328 bits (841), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 96/387 (24%), Positives = 178/387 (45%), Gaps = 19/387 (4%)

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG---YPVED 491
             + D + N   ++ +   +  IL + SDG+ + + +G  L  N A  ++FG      + 
Sbjct: 218 QAETDLQQNNLTLQEQTNLMQLILNSMSDGVIVSDDKGKFLIVNPAAEQMFGGITESQQS 277

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST---KEEKLLSLRIIIKKL 548
              + + +F            +  + +L   Q              E   +++     K 
Sbjct: 278 EWSEQYGLFQADRVTLFPTQEIPLVRTLRGEQVQNVEMFTRHSKAPEGIWITVSGTPLKD 337

Query: 549 PFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
                    +   DI+E K  + K+  AK+ AE  +  KS+FLA ++HE+RTPL  I+G+
Sbjct: 338 ASGTLKGGVVVCRDITERKSAELKILQAKEAAEVANHAKSEFLANMNHELRTPLNGILGY 397

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
           +++++     P    +  +  + I + G+ +L ++ND+LD+SK+E  KM+L+ +      
Sbjct: 398 AQILQRD---PATTSKQQKGLSVIHQCGSHLLTLINDILDLSKLEVQKMDLYPQDFHFAN 454

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG-QI 725
            ++  + + ++ A +K I  R   AN    + AD + ++Q+ LN+LSNAI FT  G  + 
Sbjct: 455 FLTTTVEICRIKAEQKGIAFRYHPANLPTAVHADDKRLRQVLLNLLSNAIKFTDFGSVKF 514

Query: 726 II------STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
            +       T  T +  +   V DTG+G+   + +    PF Q    +    EGTGLGL 
Sbjct: 515 TVEAISNEETADTRSTRIRFLVEDTGIGIPTEKWQTIFLPFEQAGK-RDRNSEGTGLGLA 573

Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEI 806
           +++ +V        + STP KG+    
Sbjct: 574 ISQQIVQMMGSSIQVNSTPGKGSKFWF 600



 Score = 48.1 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 11/142 (7%), Positives = 28/142 (19%), Gaps = 9/142 (6%)

Query: 90  DAHGYLKEISEELPKTIG----NYAFKMIGM--RLCDVSDILHIDPNNHIGDLLKRQNTW 143
           D  G    ++    +  G    +   +              L       +   L R    
Sbjct: 252 DDKGKFLIVNPAAEQMFGGITESQQSEWSEQYGLFQADRVTLFPTQEIPLVRTL-RGEQV 310

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                          + I ++  P+   +    G  G  +               +  + 
Sbjct: 311 QNVEMFTRHSKAPEGIWITVSGTPLKDASGTLKG--GVVVCRDITERKSAELKILQAKEA 368

Query: 204 FSHLHEIKKGHSSVEKEKYDIF 225
               +  K    +    +    
Sbjct: 369 AEVANHAKSEFLANMNHELRTP 390


>gi|28210825|ref|NP_781769.1| phosphate regulon sensor protein phoR [Clostridium tetani E88]
 gi|28203263|gb|AAO35706.1| phosphate regulon sensor protein phoR [Clostridium tetani E88]
          Length = 571

 Score =  328 bits (841), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 85/363 (23%), Positives = 171/363 (47%), Gaps = 31/363 (8%)

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
            +  +L +IL++  +G+  ++++  I+  N    ++F    +DI+ +     ++      
Sbjct: 234 EKQNKLEAILKSMDNGVIAVDKDFKIIMINPYAKEIFSIE-QDIIGENLLDKIKSYE--- 289

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISEWKQE 567
               L EI   D  +   +     + +EK L ++    K+          + D++E K+ 
Sbjct: 290 ----LKEIFKEDNIEDY-REVKILSPKEKNLRVKTTDIKIGKQLIGTVAVVQDVTEIKKL 344

Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
           +              + +S F+A V+HE++TPLT+I GF+E +K             ++ 
Sbjct: 345 E--------------NIRSQFVANVTHELKTPLTSIRGFAETLK----YVEDRETKDKFL 386

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
           N I+   + +  ++ND+L +S IE+   ++  E +S++E + + + L++  A +K I + 
Sbjct: 387 NIINDESDRLTRLINDILALSHIENSN-SMKLENISINEMLEDIVYLMENSAKDKNIEL- 444

Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747
               + +  I  D    KQ+ +N++ N I +T  GG++ I      N  + + V DTGVG
Sbjct: 445 FIVGDKMQPIKGDRDRFKQMMINLVDNGIKYTEEGGKVYIGAKKEDNNCI-VWVEDTGVG 503

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           ++   +E+  + F ++  ++     GTGLGL + K +V    G   I S   KG+   I 
Sbjct: 504 ISKEHVERLFERFYRVDKARSRSQGGTGLGLAIVKHIVLGFGGTINIESEEGKGSKFIIR 563

Query: 808 FPL 810
            P+
Sbjct: 564 IPI 566


>gi|28897261|ref|NP_796866.1| aerobic respiration control sensor protein ArcB [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|260876228|ref|ZP_05888583.1| aerobic respiration control sensor protein ArcB [Vibrio
           parahaemolyticus AN-5034]
 gi|28805470|dbj|BAC58750.1| sensor histidine kinase FexB [Vibrio parahaemolyticus RIMD 2210633]
 gi|308092976|gb|EFO42671.1| aerobic respiration control sensor protein ArcB [Vibrio
           parahaemolyticus AN-5034]
          Length = 783

 Score =  328 bits (841), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 89/406 (21%), Positives = 175/406 (43%), Gaps = 19/406 (4%)

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
               +         +E E       + ++      L S ++A+ D I   N +G+    N
Sbjct: 122 RIKAEEAREEAMQDLENEVFQRERTQLELAERTALLRSFIDASPDLIYYRNADGVFSGCN 181

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
           RA+ +L G     ++         +     +     ++ S +   T E+        +  
Sbjct: 182 RAMEELTGKKEHQLVGLSPWDVYSKEIAQPIVDTDQKVFSDNQAITYEQWLEYPDGRKHY 241

Query: 539 LSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
             LR +                 DI+E K+ +  L       EK S  K+ F++ +SHE+
Sbjct: 242 FELRKVPFYSKDGRHLGLVGFGRDITERKRHEESL-------EKASRDKTTFISTISHEL 294

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTPL  I+G S ++ + +          ++   I+ S   + +I ND++D+ K +  K+ 
Sbjct: 295 RTPLNGIVGLSRMLLDSQL----TEEQRKHMQTINVSAITLGNIFNDIIDMDKFDRRKLE 350

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNA 715
           L   P++ ++ V+E  S+  L A +K +       +++P+ I  D   ++Q+  N++SNA
Sbjct: 351 LLPAPLNFEDFVAEIESISALMAEQKGLRFDLERLSDLPKAIEVDATRLRQVIWNLVSNA 410

Query: 716 IHFTPSGGQI-IISTTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGE 772
           + FT  GG +  +S     +   +I+ V DTG+G+   EL+K    + Q+ + +      
Sbjct: 411 MKFTKEGGVVMTVSADVEEDFATIIMEVEDTGIGIPEAELDKIFAMYYQVKSGKDNLHAV 470

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF--PLYDTSHP 816
           GTG+GL ++K +++   G   + S    G+   +    P+ +   P
Sbjct: 471 GTGIGLAVSKQLINMMDGDITVTSEEGFGSTFTVSIHVPIVELEEP 516



 Score = 48.5 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/185 (11%), Positives = 48/185 (25%), Gaps = 6/185 (3%)

Query: 34  FETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHG 93
            E E+  K     +   Q    +  Q   +     +                 +  +A G
Sbjct: 117 LEIEERIKAEEAREEAMQDLENEVFQRERTQLELAERTALLRSFIDASPDLIYYR-NADG 175

Query: 94  YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPI 152
                +  + +  G    +++G+   DV       P  +    +         +  L   
Sbjct: 176 VFSGCNRAMEELTGKKEHQLVGLSPWDVYSKEIAQPIVDTDQKVFSDNQAITYEQWLEYP 235

Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212
           +G       +L  +P YS++    G  GFG               ++  +  +       
Sbjct: 236 DGR--KHYFELRKVPFYSKDGRHLGLVGFG--RDITERKRHEESLEKASRDKTTFISTIS 291

Query: 213 GHSSV 217
                
Sbjct: 292 HELRT 296


>gi|309790686|ref|ZP_07685237.1| histidine kinase [Oscillochloris trichoides DG6]
 gi|308227280|gb|EFO80957.1| histidine kinase [Oscillochloris trichoides DG6]
          Length = 830

 Score =  328 bits (841), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 129/678 (19%), Positives = 245/678 (36%), Gaps = 49/678 (7%)

Query: 176 SGFRGFGIVHVNRVDNDPRALGK--RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH 233
           +G   + +V    ++  P A             + ++K        +   +F   S    
Sbjct: 14  AGMLSWALVRKRTLETVPIARTLLIEQMHDAVLVADVKGRILDANPQACQLFQPPSTSII 73

Query: 234 LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE----ESSLPEQEDFHTINLN-QYTKKQY 288
            +    +           D+    +  L  S     E+ +    D H   L      +  
Sbjct: 74  GKPVATIIPALVPLLAVTDLSGRTEIRLDQSPPIILEADITALHDGHDSPLGWLIVLRDI 133

Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF----------FVYSH 338
               + +  +       +     +        L    +                  +  +
Sbjct: 134 TLPARQSRYQQVLSDCSQLLLRENQPTINSSTLIDRVLGMLRRAAGVTRIDICQNMLDEN 193

Query: 339 GNLFYANPSFLLLTKYKSVDD-----------IEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
           G L     +    T   +              +        L+  P      A    +  
Sbjct: 194 GELAAHTVAEEHHTDVPAFPLEYCIPWSQIPHLRDKLIAGQLVCGPVGQLFAAFPATVQK 253

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM-----PQNGIEPEDVDTRI 442
                       L  +  N      +          +   +         +    +    
Sbjct: 254 LQTGGVEDLL--LLPLYGNDGWWGILRASSSRSDQVWDAPLIKFLCSAADMIAAAIRQWE 311

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFG-YPVEDILRKPFTVF 500
             R ++     +  + +AT D I + + +   ++ TN  + +  G  P+  I+ +     
Sbjct: 312 TLRTIQEREHFIQRVTQATPDLIYVYDLQTDQVIYTN--MEQGPGGMPLTAIIGRTSDAD 369

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL-RIIIKKLPFSSCY----S 555
           L     +    YLT+I++    Q           +   L L R     +  +  Y     
Sbjct: 370 LSARELATRQAYLTQIINAADMQVCSLEYRLQQADGSNLWLLRRDTVFVRDAQGYPTQIL 429

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
             + D++E       L  AK+ AE  +  KS FL+ +SHE+RTPLTAIIG+S+ +  Q  
Sbjct: 430 GIVQDVTERHYRSEALLRAKEDAEAANRAKSTFLSMMSHELRTPLTAIIGYSQ-LLGQLM 488

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
                       ++I  SG  +L ++ND++++S+I+SG+ NL   PV++ + V+EA+S+V
Sbjct: 489 TVGDYEGVKSDLHHIYTSGKHLLALINDVIELSRIDSGQRNLDMRPVNIVDLVTEAVSMV 548

Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
           +      R  ++     +IP ++ D   V+QI LN+L+NA  FT   G+I  +T +    
Sbjct: 549 RPLVTRNRNTLQIECPLDIPIVITDSLKVRQIILNLLNNAAKFT-ENGEITFTTIYDPQG 607

Query: 736 EV---ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
           EV   I ++ DTG+G+   ++ +   PF Q+  +   R EGTGLGL L + + +   G+ 
Sbjct: 608 EVPTLIFQIADTGIGIDQRQIPRIFDPFVQVDEALNRRYEGTGLGLALCRRLCEVLGGEI 667

Query: 793 YIFSTPAKGTLIEIIFPL 810
            + ST   G++  +  PL
Sbjct: 668 SVQSTLGVGSIFTVRLPL 685


>gi|150390836|ref|YP_001320885.1| multi-sensor signal transduction histidine kinase [Alkaliphilus
           metalliredigens QYMF]
 gi|149950698|gb|ABR49226.1| multi-sensor signal transduction histidine kinase [Alkaliphilus
           metalliredigens QYMF]
          Length = 586

 Score =  328 bits (841), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 81/369 (21%), Positives = 170/369 (46%), Gaps = 26/369 (7%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
             ++ + +++ S+L   +DG+  ++    IL  N    +L     + ++  P    ++ N
Sbjct: 238 SAIKDQNIKMDSMLTGMTDGVIALDLNKKILLINHESRELLNVEQDVVIGSPMDKAIQNN 297

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHD 560
               M   +            E+      + ++++ ++  + K    +       L + D
Sbjct: 298 ---EMYEMIENTFIHKKS--YEEEMKLMDENKRIVKVKSSLMKNKNDNDDVIGVFLLIQD 352

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           ++E ++ +              + KS+F A VSHE+RTPLT I GF E +++  +  L  
Sbjct: 353 VTEIRKLE--------------ALKSEFAANVSHELRTPLTLISGFVETLQS--WESLDE 396

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
                  N I+     +  ++ND+L +S+IE+ +    +E + ++  ++E   ++   A 
Sbjct: 397 KDRKMALNIIELETERLKRLINDILRLSEIENIQRLAKYEVLDIEGLINEVQYMMSGIAA 456

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
           +K I ++T    N+  +  +    KQ+ +N++ NAI +TP+GGQI +S       E+ + 
Sbjct: 457 KKNIQLKTHIEKNVHTLFGNSDWFKQMLVNLIENAIKYTPTGGQIKVS-AKNEQNEISIM 515

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V D G+G+   + E+  + F ++  ++     GTGLGL + K +V    G   + S   +
Sbjct: 516 VMDNGIGIPKEDCERIFERFYRVDKARSRDVGGTGLGLTIVKHIVTEFGGTIEVSSKLNQ 575

Query: 801 GTLIEIIFP 809
           G+  ++  P
Sbjct: 576 GSHFKVRLP 584


>gi|295696418|ref|YP_003589656.1| multi-sensor signal transduction histidine kinase [Bacillus tusciae
           DSM 2912]
 gi|295412020|gb|ADG06512.1| multi-sensor signal transduction histidine kinase [Bacillus tusciae
           DSM 2912]
          Length = 590

 Score =  328 bits (841), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 82/399 (20%), Positives = 163/399 (40%), Gaps = 32/399 (8%)

Query: 420 KANQFPENMPQNGIEPEDVDTRINK--RKMEIEVMQLCSILEATSDGIAIINREGIILST 477
                 + + + GI    +   + +  + +  E  QL +IL + +DG+   +  G +L  
Sbjct: 213 VRVVTGDEVGRLGITLNKLAHDLEENIKALSKEKEQLANILASLADGVVSADLTGKVLLA 272

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
           N    +           +P    L      V    +    +       ++  +G     +
Sbjct: 273 NPPARRWLRALSMAEEGQPSENRLPSQLFEVEQKVIETKEAQ------QREVVGQ---GR 323

Query: 538 LLSLRIIIKKLPFS---SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
            +++ +     P S         + DI+E    +                + DF+A VSH
Sbjct: 324 TMAITMAPLYEPGSQALRGVVAVLRDITEQLNIE--------------RMRRDFVANVSH 369

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           E+RTPL+ + G+SE + +         +  E A  I      +  +VNDLLD++++ESG+
Sbjct: 370 ELRTPLSMLQGYSEALVDDFID--DPEQRRELAEIILEETLRMRRLVNDLLDLAQLESGR 427

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILS 713
             +  +PV +   + +        A E+++        + P I+ AD+  ++Q+  N++ 
Sbjct: 428 FVMKRQPVDVRPLIQKIWRKFSALAQERKLTFHLEMQVDDPVIVDADVDRLEQVLTNLID 487

Query: 714 NAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
           NA   T   G + I  + + +    + V D G G+   ++    + F ++  ++     G
Sbjct: 488 NAFRHTQPPGSVTIRFSVSQD-TARIAVEDQGAGIPPEDIPYIWERFYKVDKARTRNRGG 546

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
           TGLGL +A+ +V  + G   + S   KGT   ++ PL  
Sbjct: 547 TGLGLAIARNIVLQHDGDITVESRLGKGTTFTVLLPLCQ 585


>gi|259500799|ref|ZP_05743701.1| histidine kinase [Lactobacillus iners DSM 13335]
 gi|302190751|ref|ZP_07267005.1| two-component system sensor histidine kinase [Lactobacillus iners
           AB-1]
 gi|309804083|ref|ZP_07698164.1| PAS domain S-box protein [Lactobacillus iners LactinV 11V1-d]
 gi|312871187|ref|ZP_07731285.1| PAS domain S-box protein [Lactobacillus iners LEAF 3008A-a]
 gi|312873315|ref|ZP_07733370.1| PAS domain S-box protein [Lactobacillus iners LEAF 2052A-d]
 gi|312874960|ref|ZP_07734979.1| PAS domain S-box protein [Lactobacillus iners LEAF 2053A-b]
 gi|325913630|ref|ZP_08175992.1| PAS domain S-box protein [Lactobacillus iners UPII 60-B]
 gi|259167493|gb|EEW51988.1| histidine kinase [Lactobacillus iners DSM 13335]
 gi|308163851|gb|EFO66117.1| PAS domain S-box protein [Lactobacillus iners LactinV 11V1-d]
 gi|311089705|gb|EFQ48130.1| PAS domain S-box protein [Lactobacillus iners LEAF 2053A-b]
 gi|311091195|gb|EFQ49584.1| PAS domain S-box protein [Lactobacillus iners LEAF 2052A-d]
 gi|311093201|gb|EFQ51547.1| PAS domain S-box protein [Lactobacillus iners LEAF 3008A-a]
 gi|325476989|gb|EGC80139.1| PAS domain S-box protein [Lactobacillus iners UPII 60-B]
          Length = 612

 Score =  328 bits (841), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 86/392 (21%), Positives = 173/392 (44%), Gaps = 29/392 (7%)

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
           ++  E      I    ++        + E  +L ++L   +DG+   +R G I   N   
Sbjct: 232 DEMGELARAFNILSVRIERSQEVS--DSERRRLDNVLMHMTDGVIATDRHGNITIINETA 289

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
                    ++  +P T  L     +     + +++S      +        +       
Sbjct: 290 LNFLDKTENEVKGEPITQLLGLKEVT-----IQDLMSTQQELIVTANVNTHDELILHADF 344

Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
            +I +   F S     +HDI+E ++ +N+              +  F++ VSHE+RTPLT
Sbjct: 345 SLIQRVTGFVSGLICVLHDITEQQKNENE--------------QRQFVSNVSHELRTPLT 390

Query: 602 AIIGFSEVIKNQRFGPLGNPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
           ++  + E + +   G   N     ++   I      ++ ++NDLL++S+++ G + +  E
Sbjct: 391 SLRAYVEALND---GAWKNENIAPQFLGVIQNETERMIRMINDLLNLSRMDRGVVKMDLE 447

Query: 661 PVSLDEAVSEAISLVQLYANEKRIL---IRTSFANNIPRILADLRSVKQIALNILSNAIH 717
            V+L++ +S  ++   +      +    IR  F +    +  D   + Q+  NI++NAI 
Sbjct: 448 WVNLNDFLSHILNRFDMMLKNDGVKKYKIRRIFPHQALWVEIDTDKMMQVIDNIMNNAIK 507

Query: 718 FTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
           ++P GG I I     +++ VIL V D G+G+   +L +    F ++  ++  +  GTGLG
Sbjct: 508 YSPDGGLITIRL-LQTHKHVILSVSDQGLGIPRKDLSRIFDRFYRVDKARSRKQGGTGLG 566

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           L ++K +V+A+ GK +  S+   G+   I  P
Sbjct: 567 LAISKEIVEAHHGKIWADSSEGNGSTFYISIP 598


>gi|172065661|ref|YP_001816373.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria
           MC40-6]
 gi|171997903|gb|ACB68820.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria
           MC40-6]
          Length = 770

 Score =  328 bits (841), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 97/503 (19%), Positives = 187/503 (37%), Gaps = 29/503 (5%)

Query: 321 LTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
                +   P         G + Y N + + L      D          L    +     
Sbjct: 128 QLDAVLQALPEGVIATDAQGCITYVNAAAIALAGGALDDA-TGRPVRDVLHVFDRDDRRV 186

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
              P+    +    ++    LH    +   S+ +        +          +  +   
Sbjct: 187 QPTPLERALAGAHALSDRHWLHGA--DGSPSVPIVEAASPIVDAHGNLDGAVLLLRD--- 241

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
               +R +        ++++A+ D I  I+REG I+S N A  ++FGY   D   +P   
Sbjct: 242 -AGTERALAEVSRLQRAVVDASPDAIVGIDREGRIVSWNPAAQRIFGYDEADARGRPLET 300

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM- 558
            +         + L +              L   ++ +     +    +   +   + + 
Sbjct: 301 LVAMRWLR--RNPLADSFDAMREAVGPLELLCVRRDGRRFRATVSAGPVHGGARSCVALS 358

Query: 559 -----------HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
                       D+   ++       A+  A+  +  K + LA VSHE+RTPL  I G+ 
Sbjct: 359 LTLRETGAQRRRDL-RTQRSLQGARDARDRADTSNRLKDELLATVSHELRTPLNVIYGWI 417

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
           EV++N R   L      +  + IDRS   +  +V D+LD S + +GK+ +   PV +   
Sbjct: 418 EVLRNTRDDALE----QQAIDAIDRSARSLTRMVGDILDASSLATGKLRIDPMPVDVVRL 473

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727
            S+ +   Q  A+   I++    A +   +  D   ++Q+  N++SNA+ FTP GG + +
Sbjct: 474 FSDTVGAFQTAASSAGIVLEFECAASACVVSGDAERLRQMLANLVSNALKFTPGGGAVTV 533

Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
           + +   +   +L V DTG G+    +      F +  +S      G GLGL + + +   
Sbjct: 534 TLS-RDDAHAVLVVADTGQGIPPAFIPHVFDMFRRADDSPASPRRGLGLGLSIVRHIAGL 592

Query: 788 NMGKFYIFST-PAKGTLIEIIFP 809
           + G+  + S    +G    +  P
Sbjct: 593 HGGQVRVESEGRNRGATFTVTLP 615



 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/377 (9%), Positives = 85/377 (22%), Gaps = 20/377 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID----PNNHIGDLLKRQNTWY 144
            DA G +  ++       G       G  + DV  +   D        +   L   +   
Sbjct: 143 TDAQGCITYVNAAAIALAGGALDDATGRPVRDVLHVFDRDDRRVQPTPLERALAGAHALS 202

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGF----RGFGIVHVNRVDNDPRALGKRL 200
            +  L   +G+   VPI  AA PI   +    G     R  G        +  +      
Sbjct: 203 DRHWLHGADGSPS-VPIVEAASPIVDAHGNLDGAVLLLRDAGTERALAEVSRLQRAVVDA 261

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
                   + +    S       IF         R    + ++     +           
Sbjct: 262 SPDAIVGIDREGRIVSWNPAAQRIFGYDEADARGRPLETLVAMRWLRRNPLADSFDAMRE 321

Query: 261 LLTSEE--------SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
            +   E                   ++    +      TL+    +    L  +     +
Sbjct: 322 AVGPLELLCVRRDGRRFRATVSAGPVHGGARSCVALSLTLRETGAQRRRDLRTQRSLQGA 381

Query: 313 AYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEI--AGGLSTLL 370
               +  + +    D+  +    +           ++ + +    D +E      +    
Sbjct: 382 RDARDRADTSNRLKDEL-LATVSHELRTPLNVIYGWIEVLRNTRDDALEQQAIDAIDRSA 440

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
            +      + +    L             +  +  +   +            +F      
Sbjct: 441 RSLTRMVGDILDASSLATGKLRIDPMPVDVVRLFSDTVGAFQTAASSAGIVLEFECAASA 500

Query: 431 NGIEPEDVDTRINKRKM 447
             +  +    R     +
Sbjct: 501 CVVSGDAERLRQMLANL 517


>gi|158320426|ref|YP_001512933.1| multi-sensor signal transduction histidine kinase [Alkaliphilus
           oremlandii OhILAs]
 gi|158140625|gb|ABW18937.1| multi-sensor signal transduction histidine kinase [Alkaliphilus
           oremlandii OhILAs]
          Length = 587

 Score =  328 bits (841), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 85/372 (22%), Positives = 171/372 (45%), Gaps = 27/372 (7%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           ++     +  ++L +  + I  I+    I+  N++  KLF    +D L +     +E+N 
Sbjct: 239 QLSDSNTKFKALLTSMVNPIIAIDTNRHIILFNQSAEKLFKIDAKDALGRDVIQIIEENY 298

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDI 561
                    +++ +   +            +K+LS+      L             M D+
Sbjct: 299 LD------RQLIKVFTTEEANFEISIKRPAKKILSINANPIHLEHDPTRIMGIVAIMEDV 352

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           +E ++ +                +SDF+  VSHE++TPLT+I GF E +K+         
Sbjct: 353 TEIRRLE--------------KMRSDFVTNVSHELKTPLTSINGFVETLKSGAV--EDRD 396

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
             + + + I+   + +  ++ND+L +S+IES +       +   + + E +  +   A+ 
Sbjct: 397 VAMRFLDIIEIETDRLKRLINDILTLSEIESMETKFIVNEIFPSDTLMEVVDFIIPLADS 456

Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
           K I + T   + +P I  +    KQI +N+L N+I +TP GG++ + T +T +  ++L V
Sbjct: 457 KEIELFTDIDSALPSIYGNRDWFKQIVINLLDNSIKYTPIGGKVEL-TAYTKDNNIVLHV 515

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
           +DTG+G+   +L +  + F ++  ++  +  GTGLGL + K +V +  GK  + S    G
Sbjct: 516 KDTGIGIPKKDLPRLFERFYRVDKARSRKVGGTGLGLAIVKYIVLSFNGKINVDSEEGNG 575

Query: 802 TLIEIIFPLYDT 813
           T   +  P+  +
Sbjct: 576 TEFIVTIPITSS 587


>gi|302381782|ref|YP_003817605.1| PAS/PAC sensor hybrid histidine kinase [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302192410|gb|ADK99981.1| PAS/PAC sensor hybrid histidine kinase [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 663

 Score =  328 bits (841), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 106/513 (20%), Positives = 204/513 (39%), Gaps = 23/513 (4%)

Query: 316 DEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
            + + +    ++     ++        + +P    L       ++     L  +      
Sbjct: 13  PDSQAIALAALESSGAGWWRVRDTQTAWWSPRMFDLFGMPQTAEVPTIEALYRMYHPDDA 72

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
           S        +      +    + R   +  +      +T+   + A+   E     G+  
Sbjct: 73  SLAARSFMALFA----SEAPVTLRYRVVHPSGAVRHHLTWGRRQPADANGEVWL-IGMVM 127

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
           +  D   +    E E      +   TSD +        +   + A   + GY   ++L +
Sbjct: 128 DVTDHVDDAVMFEAERA-FRFVAGHTSDMVVRHQVGVGLTYVSPAAKTVLGYSPREMLGR 186

Query: 496 PFTVFLEQNTPSVMNHYLT-EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC- 553
               F+       +   +   I   +   T      G  K+   + L    + +   +  
Sbjct: 187 APGDFVAPGDLQRVRGIVHGRIARRETVSTEGYEYRGIHKDGHEVWLEANPRLVINGAGE 246

Query: 554 ---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
                  + DI+  +  + +L  A+ +AE  S  KS+FLA +SHE+RTPLT+I+GFS +I
Sbjct: 247 LSEVVDVVRDITARRAAQAELQSARLLAEAASQAKSEFLANMSHELRTPLTSILGFSRLI 306

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
                    +     Y + I  +G  +L +VND+LD SK+E+G + L  EP S+      
Sbjct: 307 GAGGDLSASD---RGYLDLIRSAGETLLTVVNDILDFSKLEAGALALSPEPFSVAALGEG 363

Query: 671 AISLVQLYANEKRILIRTSF----ANNIPRILADLRSVKQIALNILSNAIHFTPSGG-QI 725
           A +L++  A  K +++             R++ D+  ++Q+ LN+L NA+ FT  G  ++
Sbjct: 364 ATALLREQAEAKGLVLSCEILGAGPAGDARLVGDVTRLRQVLLNLLGNAVKFTERGNVRL 423

Query: 726 IISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
            +S     +    L   V DTG G+   ++E+  + F Q   S   R  GTGLGL +++ 
Sbjct: 424 SLSVEPAQDGTATLSASVTDTGPGLAAGQIEQMFERFTQADGSVSRRFGGTGLGLAISRR 483

Query: 784 MVDANMGKFYIFSTPAKGTLIEII--FPLYDTS 814
           ++D   G+    S  + G+        P+ +T+
Sbjct: 484 LMDVMGGEIGARSDGSTGSTFWFRTVLPVAETA 516



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/391 (9%), Positives = 84/391 (21%), Gaps = 40/391 (10%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD-LLKRQNTWYGKTTLWP-- 151
           L  +S      +G    +M+G    D      +     I    + R+ T   +   +   
Sbjct: 165 LTYVSPAAKTVLGYSPREMLGRAPGDFVAPGDLQRVRGIVHGRIARRETVSTEGYEYRGI 224

Query: 152 -IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
             +G    V ++     + +   E S      +V         +A  +          + 
Sbjct: 225 HKDGH--EVWLEANPRLVINGAGELSEV--VDVVRDITARRAAQAELQSARLLAEAASQA 280

Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270
           K    +    +              +            + D +    +  L    +    
Sbjct: 281 KSEFLANMSHELRTPLTSILGFSRLIGAGGDLSASDRGYLDLIRSAGETLLTVVNDILDF 340

Query: 271 EQEDFHTINLNQYTKK-----QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
            + +   + L+          +    L     E+   +            D         
Sbjct: 341 SKLEAGALALSPEPFSVAALGEGATALLREQAEAKGLVLSCEILGAGPAGDARLVGDVTR 400

Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
           + +      +   GN         +          +    LS  +              M
Sbjct: 401 LRQ----VLLNLLGNAVKFTERGNVRLSLSVEPAQDGTATLSASVTDTGPGLAAGQIEQM 456

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
             R  +   + S      +      L +            E   ++              
Sbjct: 457 FERFTQADGSVS------RRFGGTGLGLAISRRLMDVMGGEIGARSDGSTGSTF------ 504

Query: 446 KMEIEVMQLCSIL---EATSDGIAIINREGI 473
                     ++L   E   D  A  + +G 
Sbjct: 505 -------WFRTVLPVAETAPDA-AGRDSDGQ 527


>gi|42524956|ref|NP_970336.1| sensory transduction histidine kinase [Bdellovibrio bacteriovorus
           HD100]
 gi|39577167|emb|CAE80990.1| Sensory transduction histidine kinase [Bdellovibrio bacteriovorus
           HD100]
          Length = 529

 Score =  328 bits (841), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 86/378 (22%), Positives = 172/378 (45%), Gaps = 25/378 (6%)

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN-HY 512
             ++L +  + +   + +G IL  N     L  Y +++I  +  ++FL +     +    
Sbjct: 6   YEALLNS--NAVIEFDNQGYILWANPNFLNLMEYELDEIEGRHHSIFLPEFHQHELEYQE 63

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEK 568
           +   L+    Q  E   L  TK+ + + ++     +               DI+E K   
Sbjct: 64  MWNQLAEGHAQAGEFKRL--TKKNREVWIQGSYTPVRNLQGEISKIVKMAVDITEKKSLA 121

Query: 569 NKLSHAKKIA-------EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           + L    K         +  +  K+ FLA +SHEIRTPL +IIG ++ +         + 
Sbjct: 122 DNLEKKNKELLGAATKAKAATDAKTVFLANMSHEIRTPLNSIIGITDTLAETPL----DN 177

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
           +   +   + R+ + ++ I+ND+LD+SK+E+G+M L   P +L   + E  +++   A E
Sbjct: 178 QQASFVEILQRANHQLMTIINDILDLSKVEAGEMELRPLPFNLQRLLDELEAVLGFRAKE 237

Query: 682 KRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS---NEEV 737
           K + +  +   ++    + D   ++Q+ +N+L+N++ FT + G+I +  +         +
Sbjct: 238 KGLKLSLAIDPDVEEYFVGDADRLRQVLMNLLNNSLKFT-NNGEISLQVSVNRTVHKGNL 296

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
           +  V DTG+G++  + +   +PF Q   +   +  GTGLGL + K +V    G  +  S 
Sbjct: 297 LFCVTDTGIGISKQKFKDIFQPFTQADTTTTRKYGGTGLGLSITKNIVQMMNGHIWFESQ 356

Query: 798 PAKGTLIEIIFPLYDTSH 815
           P +GT       +  T+ 
Sbjct: 357 PGQGTSFFFTISVPSTTE 374



 Score = 42.3 bits (98), Expect = 0.30,   Method: Composition-based stats.
 Identities = 30/264 (11%), Positives = 64/264 (24%), Gaps = 27/264 (10%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI--DPNNHIGDLLKRQNTWYGKT 147
           D  GY+   +      +     ++ G          H        + + L   +   G+ 
Sbjct: 19  DNQGYILWANPNFLNLMEYELDEIEGRHHSIFLPEFHQHELEYQEMWNQLAEGHAQAGEF 78

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                +     V I  +  P+ +   E S      IV +     + ++L   L+KK   L
Sbjct: 79  KRLTKKNR--EVWIQGSYTPVRNLQGEIS-----KIVKMAVDITEKKSLADNLEKKNKEL 131

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT---- 263
                   +    K    +  S      + + +           D  +     +L     
Sbjct: 132 LGAATKAKAATDAKTVFLANMSHEIRTPLNSIIGITDTLAETPLDNQQASFVEILQRANH 191

Query: 264 ---SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
              +  + + +        +           L +  +    + +      LS   D    
Sbjct: 192 QLMTIINDILDLSKVEAGEMELRPLPFNLQRLLDELEAVLGFRAKEKGLKLSLAIDPDVE 251

Query: 321 LTPETVDKCPIPFFVYSHGNLFYA 344
                        FV     L   
Sbjct: 252 EY-----------FVGDADRLRQV 264


>gi|312872733|ref|ZP_07732798.1| PAS domain S-box protein [Lactobacillus iners LEAF 2062A-h1]
 gi|325912287|ref|ZP_08174684.1| PAS domain S-box protein [Lactobacillus iners UPII 143-D]
 gi|311091775|gb|EFQ50154.1| PAS domain S-box protein [Lactobacillus iners LEAF 2062A-h1]
 gi|325475946|gb|EGC79115.1| PAS domain S-box protein [Lactobacillus iners UPII 143-D]
          Length = 612

 Score =  328 bits (840), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 89/394 (22%), Positives = 178/394 (45%), Gaps = 33/394 (8%)

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
           ++  E      I    ++        + E  +L ++L   +DG+   +R G I   N   
Sbjct: 232 DEMGELARAFNILSVRIERSQEVS--DSERRRLDNVLMHMTDGVIATDRHGNITIINETA 289

Query: 482 SKLFGYPVEDILRKPFTVFL--EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
                    ++  +P T  L  ++ T   +     E++      T +++ L +       
Sbjct: 290 LNFLDKTENEVKGEPITQLLGLKEVTIQDLMSTQQELIVTANANTHDELILHAD------ 343

Query: 540 SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
              +I +   F S     +HDI+E ++ +N+              +  F++ VSHE+RTP
Sbjct: 344 -FSLIQRVTGFVSGLICVLHDITEQQKNENE--------------QRQFVSNVSHELRTP 388

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
           LT++  + E + +   G   N     ++   I      ++ ++NDLL++S+++ G + + 
Sbjct: 389 LTSLRAYVEALND---GAWKNENIAPQFLGVIQNETERMIRMINDLLNLSRMDRGVVKMD 445

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRIL---IRTSFANNIPRILADLRSVKQIALNILSNA 715
            E V+L++ +S  ++   +      +    IR  F +    +  D   + Q+  NI++NA
Sbjct: 446 LEWVNLNDFLSHILNRFDMMLKNDGVKKYKIRRIFPHQALWVEIDTDKMMQVIDNIMNNA 505

Query: 716 IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           I ++P GG I I     +++ VIL V D G+G+   +L +    F ++  ++  +  GTG
Sbjct: 506 IKYSPDGGLITIRL-LQTHKHVILSVSDQGLGIPRKDLSRIFDRFYRVDKARSRKQGGTG 564

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           LGL ++K +V+A+ GK +  S+   G+   I  P
Sbjct: 565 LGLAISKEIVEAHHGKIWADSSEGNGSTFYISIP 598


>gi|297538157|ref|YP_003673926.1| PAS/PAC sensor hybrid histidine kinase [Methylotenera sp. 301]
 gi|297257504|gb|ADI29349.1| PAS/PAC sensor hybrid histidine kinase [Methylotenera sp. 301]
          Length = 873

 Score =  328 bits (840), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 116/640 (18%), Positives = 231/640 (36%), Gaps = 48/640 (7%)

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
             +     + +      +          R+  +V  +          +   +  L     
Sbjct: 87  TTDADARVTLLNPLAEKLTGWTLAEAAGRLIGEVFPIINKETRLPATIPVMET-LAEGTI 145

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN----LT 322
             L         + ++         +++   +    +    + S      +       L 
Sbjct: 146 QGLANHTVLIARDGSECDIADSCAPIRDREGQVVGAVLVFRNVSEEYAVQQALRDNTALI 205

Query: 323 PETVDKCPIPF--FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
              ++           S+G +   NP+   +  +   +      GL+  +  P+L     
Sbjct: 206 QTILNTVADGIITLHASNGTIETVNPTAQKMFGFSGAEL----AGLNFSVLIPELDQEQR 261

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
              +  Y       A       I W ++N                       I  +    
Sbjct: 262 NSSLKHYSPSDEARAVGLGREVIGWRKDNK-PFPLEIAVSEMWLGGERYFTCILRDISAR 320

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK-PFTV 499
           R+ +           +I  + +      + +G+I   N    ++ GY  ++++ K     
Sbjct: 321 RLAEEAALNAGALQSAIFNSENFSSIATDAKGVIQIFNVGAERMLGYTADEVMNKITPAE 380

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLE-------------KITLGSTKEEKLLSLRIIIK 546
             +          L+  L+  +    E                    K+       + + 
Sbjct: 381 ISDPEEVIARAKTLSIELATAITPGFEALVFKASRGIEDIYELTYIRKDGSRFPAVVSVT 440

Query: 547 KLPFSS----CYSLTMHDISEWKQEKNKLSHAKKI--------------AEKESSHKSDF 588
            L  +      Y L   D +  KQ + + +   +               AEK +  KSDF
Sbjct: 441 ALRDAQSAIIGYLLIGTDNTARKQIEAERTTLHEALQLKNVELERATFVAEKANLAKSDF 500

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
           L+ +SHE+RTPL AI+GF+++I  +   P       +  + I ++G  +L+++N++LD++
Sbjct: 501 LSSMSHELRTPLGAILGFAQLI--ESGTPAPTASQKKSIDQILKAGWYLLELINEVLDLA 558

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIA 708
            IESGK+ L  EPV L + + E  ++++  A  + I +          +  D   VKQI 
Sbjct: 559 LIESGKLALSLEPVLLADVMHECEAMIEPQAQSREINVIFKQPEVPYCVRGDRTRVKQIV 618

Query: 709 LNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
           +N+LSNAI +    G + +  + T ++ V + V+DTG G+T+ EL +  +PF ++   Q 
Sbjct: 619 INLLSNAIKYNRVNGTVTVECSITPHDTVRISVQDTGAGLTDEELTQLFQPFNRL--GQN 676

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            + EGTG+GL + K + D   GK  + S   +G+   I  
Sbjct: 677 TKEEGTGIGLVVCKRLTDLMKGKIGVESIVGEGSTFWIEL 716



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/405 (9%), Positives = 96/405 (23%), Gaps = 36/405 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH----IDPNNHIGDLLKRQNT-- 142
            DA   +  ++    K  G    +  G  + +V  I++    +     + + L       
Sbjct: 88  TDADARVTLLNPLAEKLTGWTLAEAAGRLIGEVFPIINKETRLPATIPVMETLAEGTIQG 147

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
               T L   +G+     I  +  PI  R  +  G     +      +   +   +    
Sbjct: 148 LANHTVLIARDGS--ECDIADSCAPIRDREGQVVGA--VLVFRNVSEEYAVQQALRDNTA 203

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
               +                     +P          + L             ++    
Sbjct: 204 LIQTILNTVADGIITLHASNGTIETVNPTAQKMFGFSGAELAGLNFSVLIPELDQEQRNS 263

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
           + +  S  ++     +       ++           S  +L    + +          L 
Sbjct: 264 SLKHYSPSDEARAVGLGREVIGWRKDNKPFPLEIAVSEMWLGGERYFTCILRDISARRLA 323

Query: 323 PET---VDKCPIPFF---------VYSHGNLFYANPSFLLLTKYKSVDDI---------- 360
            E            F           + G +   N     +  Y + + +          
Sbjct: 324 EEAALNAGALQSAIFNSENFSSIATDAKGVIQIFNVGAERMLGYTADEVMNKITPAEISD 383

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
                      + +L+         L       I     L  I+ +     A+       
Sbjct: 384 PEEVIARAKTLSIELATAITPGFEALVFKASRGIEDIYELTYIRKDGSRFPAV-VSVTAL 442

Query: 421 ANQFPENMPQNGIEPEDVDTRI--NKRKMEIEVMQLCSI-LEATS 462
            +     +    I  ++   +    +R    E +QL ++ LE  +
Sbjct: 443 RDAQSAIIGYLLIGTDNTARKQIEAERTTLHEALQLKNVELERAT 487



 Score = 71.2 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 16/143 (11%), Positives = 39/143 (27%), Gaps = 7/143 (4%)

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
             R     ++    +L   L +  D +   + +  +   N    KL G+ + +   +   
Sbjct: 59  QLRQLNATLQDSEEKLTVTLNSIGDAVITTDADARVTLLNPLAEKLTGWTLAEAAGRLIG 118

Query: 499 VFLEQNTPSVMNHY---LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555
                            + E L+    Q L   T+   ++     +      +       
Sbjct: 119 EVFPIINKETRLPATIPVMETLAEGTIQGLANHTVLIARDGSECDIADSCAPIRDREGQV 178

Query: 556 L----TMHDISEWKQEKNKLSHA 574
           +       ++SE    +  L   
Sbjct: 179 VGAVLVFRNVSEEYAVQQALRDN 201


>gi|257059588|ref|YP_003137476.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            8802]
 gi|256589754|gb|ACV00641.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            8802]
          Length = 1319

 Score =  328 bits (840), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 88/391 (22%), Positives = 172/391 (43%), Gaps = 42/391 (10%)

Query: 445  RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
              ++  V  L +I++   DG+ +I+  G I   NRA++++F    +    +         
Sbjct: 951  ETLQNTVADLNAIVDNLGDGLIVIDIYGQITRYNRALTEMFNLK-DSPQGQHLLEVFPP- 1008

Query: 505  TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-----CYSLTMH 559
                +   L + +  D ++ +      +  +     +  II+              + + 
Sbjct: 1009 ----VLATLLKPIEPDQQKVVTVEVELAQGKIGQALISKIIQGSYGQGTQKCIGAVILIR 1064

Query: 560  DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN------- 612
            D++  ++ +                K+DFLA VSHE+RTPLT+++GF+ +I +       
Sbjct: 1065 DVTAEREIE--------------QIKNDFLATVSHELRTPLTSVLGFAALILDKLNRVIF 1110

Query: 613  ------QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
                   +       +       I      +  ++ND+LDI+KIESGK+  +FE VS   
Sbjct: 1111 PWVAIGDQPTQKAIQQVRNNLEIIVAESERLTSLINDVLDIAKIESGKVEWNFESVSPII 1170

Query: 667  AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726
             +  AI        +K + +   F+ ++P I  D   + Q+ +N+LSNA+ FT  G    
Sbjct: 1171 ILERAIISTSSLFEDKNLRLIRDFSPDLPLIRGDQDRLIQVVINLLSNAVKFTEVGS--- 1227

Query: 727  ISTTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
            ++     N E +++ + DTG+G+ + E  K    F Q+ N    + +G GLGL + + ++
Sbjct: 1228 VTCQAQQNQEYLVIAITDTGIGIPHNEQNKVFDRFQQVGNVLTNKPQGNGLGLSICRQII 1287

Query: 786  DANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
            + + G+ ++ S   +G+      PL  +  P
Sbjct: 1288 EHHGGQIWVESQLGQGSTFFFTLPLAVSLPP 1318


>gi|325188817|emb|CCA23345.1| hybrid signal transduction histidine kinase putative [Albugo
           laibachii Nc14]
          Length = 1524

 Score =  328 bits (840), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 130/737 (17%), Positives = 256/737 (34%), Gaps = 56/737 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTW 143
            + +D +G +   + +  +       +++G +L D                D LK     
Sbjct: 93  IFGVDVNGCVNIWNRKAVEITQYSTEEVLGEKLVDTFIPDDYRAAVAEVFSDALKGDEGA 152

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +  L    G   +V I L A   + ++         GI               RL   
Sbjct: 153 NFEVPLITKTGR--HVNILLNATARFDQHGGIV--GVVGIGQDITERIAQEQEYTRLIDT 208

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
            +        +  V              P   M   +        +KD V       L  
Sbjct: 209 ANAPIFGVDNNGCVNIWNKKAAEITQYTPSDVMGENLVEKFITDDYKDAVRSVLAKALDG 268

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
            E ++             +        +  N   +    +      +     ++      
Sbjct: 269 IETANFEFPLITKM--GRRVEILLNATSRFNEHGKVMGMVGIGQDITDRIAQEQE---YS 323

Query: 324 ETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
             +D    P F       +   N     +T Y   + +     L     +P+     A  
Sbjct: 324 RLIDTANAPIFGVDANMCVNIWNKKAAQITSYSIAEVMGEN--LVETFISPEYRPIVAD- 380

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             +L ++ +    A+     I         +      + +     +   GI  +  D   
Sbjct: 381 --VLSKALKGIQTANFEFPLITRPGTRIEIL-LNATPRMDSNGTIVGVVGIGQDITDR-- 435

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV-FL 501
               +  E      +++  +  I  ++  G I   N+ + ++ GY    +L       F+
Sbjct: 436 ----IAQEHEYFR-LIDTANAPIFGVDTIGNINEWNQKIEEITGYSKATVLGLSLVNTFI 490

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLT 557
              +   +   L + L        E     +TK+   L L +                  
Sbjct: 491 IPESRQQVRQLLNQALIG--VDVGEMELPMTTKQGLFLLLLVNASSKKDMHGNIRGAIGV 548

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
             D +  KQ +              + K +FLA  SHE+RTPL +++G  E++K ++   
Sbjct: 549 GQDYTARKQME--------------AAKVNFLASFSHELRTPLNSVLGMLELLKEKKNLD 594

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
             + R++  A     SG+L+L+++ND+LD+SKIE+G M +   P  + + +  +I + + 
Sbjct: 595 KNSERHVHMA---YVSGSLLLNLINDILDLSKIEAGHMEITAAPFHMHDLLDYSIEIFKF 651

Query: 678 YANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSN- 734
            A E+ I++      ++P  ++ D+  ++QI LN+LSNAI FT  G   +  +     + 
Sbjct: 652 KARERNIILEQKCGKDVPKMVIGDVVRLRQILLNLLSNAIKFTSEGSITVTCNVVLEPSL 711

Query: 735 ----EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
               ++++ +V DTGVGM   E  +    F ++  ++Q    G+GLGL + K +V    G
Sbjct: 712 PPQFKKLLFQVIDTGVGMDAEERSRLFSLFTKLERTRQNNPTGSGLGLAICKQLVQLMDG 771

Query: 791 KFYIFSTPAKGTLIEII 807
           +  + S   +G+     
Sbjct: 772 EIDVDSELNQGSNFYFT 788


>gi|219850111|ref|YP_002464544.1| multi-sensor signal transduction histidine kinase [Chloroflexus
           aggregans DSM 9485]
 gi|219544370|gb|ACL26108.1| multi-sensor signal transduction histidine kinase [Chloroflexus
           aggregans DSM 9485]
          Length = 880

 Score =  328 bits (840), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 119/654 (18%), Positives = 236/654 (36%), Gaps = 60/654 (9%)

Query: 180 GFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK 239
           G G++    +      L  R  +  +     +   +    + Y      +     R+  +
Sbjct: 261 GEGVIGAVTLQERHNPLDLRFMQDLAQSIASQAAIALQNADLYHTIRTLNAELEQRVIER 320

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
              L E        L      +  S +  L        +      +       +  S   
Sbjct: 321 THELEEEKDRLA-TLHAIASEVNRSLDLDLILNNSLEMLAHIVQAEHASILLTEEESPSL 379

Query: 300 FEYLSHRNHPSLSAYFDEGE--NLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSV 357
               +                         +      V         +  ++ +      
Sbjct: 380 LATRAILGRKVTPDNTVRFAIGQGIAGWAAQHGQTVLVND----VQQDDRWVTIPGSNRK 435

Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
            +        +++  P       +  + L  S                   +   +    
Sbjct: 436 RE-------GSMIAVPLFVQGEVLGVMTLSHSRPNFFH-----------EGHVRLLNACA 477

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
              A           I  E         + + E  Q+ +IL++  DG+ + +  G ILS 
Sbjct: 478 GTIAIGINNAKLYRMIIDESNRRSELLERQQRETSQITAILQSLLDGVLVCDIHGSILSV 537

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY-LTEILSLDLRQTLEKITLGSTKEE 536
           N+A  ++   P+E++L       ++    +      L E+    L       T  +T   
Sbjct: 538 NQAAGRILHRPIEELLLWNMHDLIQHCLSTHAADLPLEELFRRPLTTDGTPRTFSTTTTI 597

Query: 537 KLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
              ++ + +  +   +       L + DI+                 +    K++F+  +
Sbjct: 598 GNATINVSLSPVLNENDRTLGALLVLRDITR--------------EVEADRMKNEFIGTM 643

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHE+RTP+TAI GF++++     G L N    E+ N I  +   +++++ND+L+I+KIES
Sbjct: 644 SHELRTPMTAIKGFTQLLAMGGLGQL-NDTQREFVNTIYNNTERMINLINDVLEITKIES 702

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712
           G + L +  + L EA+S  I+ +Q + ++++  +  S    +P I AD   + QI  ++L
Sbjct: 703 GSIELEWRSLHLAEALSGVIAELQSHISQRQHQLTISIPPGLPLIRADAMRLHQILYHVL 762

Query: 713 SNAIHFTPSGGQIII---------------STTHTSNEEVILRVRDTGVGMTNYELEKAM 757
            NA+ +TP+GG+I I               S  HT++  ++L + DTGVG+   +L +  
Sbjct: 763 LNAVKYTPAGGKITIAAREILNVDFPEPVRSILHTNHRYLLLSISDTGVGIRPEDLPRIF 822

Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
             F +  N  ++   GTGLGL + K +V    G  ++ ST  +G+   I  P+ 
Sbjct: 823 DRFFRAENPLKVEAGGTGLGLSIVKPLVQLLGGHIWVESTVGQGSTFYIALPVA 876


>gi|332704399|ref|ZP_08424487.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
            Walvis Bay]
 gi|332554548|gb|EGJ51592.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
            Walvis Bay]
          Length = 1202

 Score =  328 bits (840), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 124/777 (15%), Positives = 241/777 (31%), Gaps = 80/777 (10%)

Query: 88   NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
              D        +  +    G  A   IG  L +      ID             T   KT
Sbjct: 297  RFDQDLRCTYANPAIESAFGQPARFYIGRSLPEA----GIDDAG-----FAGLETILHKT 347

Query: 148  TLWPIEGTNLYVPIDLAAL--------PIYSRNREFSGFRGFGIVHVNRVDNDPRALGK- 198
                +E T  +V    +          P  S N +              V  +  A  + 
Sbjct: 348  LSEGVEKTAEFVRQTESGRQVFHCRCMPERSSNGQIDSV--LVSCRDITVLREQEARYQS 405

Query: 199  --RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256
                        ++      V ++  DI               +      +    +    
Sbjct: 406  VFEQAAVGLARAKLDNRLLQVNQKLCDILGYSRDELLNLRYEDL-----THPDDLERELP 460

Query: 257  EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG----TLQNNSKESFEYLSHRNHPSLS 312
                LL  + +S   ++ +   + +             +               +     
Sbjct: 461  LMRQLLAGKTNSYTLEKRYIRKDNSLVWATLAVSLDYNSAGQPVGLIGAVEDISDRKQAE 520

Query: 313  AYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVD--------DIEIA 363
                E E       D       + S  G++  AN +   +      +         ++ +
Sbjct: 521  EALKEREERLRAFFDASIDAVLLTSPDGSVLTANRAAQDMFGLTEQEIIAVGCDGLLDTS 580

Query: 364  GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ-WNRENSLAMTFIPFEKAN 422
              L  +L   +         +   RSD +   A       Q        +M      +  
Sbjct: 581  DPLLPILLEERTRTGRTRGELRYRRSDGSLFEAEMSSGLYQDAQGMTLTSMVIRDITERK 640

Query: 423  QFPENMPQ--------NGIEPEDVDTRINKRKMEIEVMQLCSILEA--TSDGIAIINREG 472
            Q  E   +             + +D +  +  +        ++  A   + G  + ++  
Sbjct: 641  QAEEARLRSLDLQNKLIIATKDILDEQTIEGLLMTVAKAAQTVTNAQVAASGYQVGDK-- 698

Query: 473  IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
                   +   +  +P  + L        ++   S     +            E      
Sbjct: 699  RFDFAVHSPHAIARFPNSEHLSGRCGGIFKKLFDSRYPGIIRLSEMELPETPREWNLASD 758

Query: 533  TKEEKLLSLRIIIKKLPFSSCYSLT---------MHDISEWKQEK------NKLSHAKKI 577
                + L +  +                        D +   Q         +   A+  
Sbjct: 759  HPPLRGLLIAALTNTKGKPEGLISVSTKANGTFTAEDETLLGQLAGVASLGLQHLSARIE 818

Query: 578  AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
            AE+ +  KS+FLA +SHEIRTP+  +IG +E+        +  P+  EY   + +SG  +
Sbjct: 819  AEQANRAKSEFLANMSHEIRTPMNGVIGLTEL----ALMTVEEPKAREYLQMVKKSGLTL 874

Query: 638  LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR- 696
            LDI+ND+LD+SKIE+GK+ L  +P SL E++   +  + + A  K + +    A ++P  
Sbjct: 875  LDIINDILDLSKIEAGKVMLEKKPFSLRESLEATLKPLDVVAQGKGLKVSLQVAPDVPDA 934

Query: 697  ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE------EVILRVRDTGVGMTN 750
            ++ D   ++Q+  N++ NA+ F+  G  + +S              +   V D G+G+  
Sbjct: 935  LMGDRGRLRQVLTNLVGNAVKFSHKG-WVRVSVGLDDGNVSSEQATISFEVADEGIGIPA 993

Query: 751  YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
             +L      F Q+ +S  ++  GTGLGL ++K +V+   G     S    G+     
Sbjct: 994  DKLSTIFDSFAQVDSSAHVKYGGTGLGLSISKHLVELMGGTIQARSEMGIGSTFSFT 1050



 Score =  137 bits (345), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 50/431 (11%), Positives = 117/431 (27%), Gaps = 34/431 (7%)

Query: 177 GFRGFGIVHVNRVDND-------PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS 229
           G+   G+V   R                 + D  +  L E          +         
Sbjct: 250 GYILAGVVAAYRESGQGHQSVAGAIRSFLQADAGYRLLVENSSDVIVRFDQDLRCTYAN- 308

Query: 230 PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE-----QEDFHTINLNQYT 284
           P                   +  +       L T    +L E      E        +  
Sbjct: 309 PAIESAFGQPARFYIGRSLPEAGIDDAGFAGLETILHKTLSEGVEKTAEFVRQTESGRQV 368

Query: 285 KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFY 343
                   ++++ +    L      ++     E E       ++  +          L  
Sbjct: 369 FHCRCMPERSSNGQIDSVLVSCRDITV---LREQEARYQSVFEQAAVGLARAKLDNRLLQ 425

Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD--RTCIAASARLH 401
            N     +  Y   + +        L        ++  + + L R        + +    
Sbjct: 426 VNQKLCDILGYSRDELL-------NLRYEDLTHPDDLERELPLMRQLLAGKTNSYTLEKR 478

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
            I+ +  + +  T       N   + +   G   +  D +  +  ++    +L +  +A+
Sbjct: 479 YIRKDN-SLVWATLAVSLDYNSAGQPVGLIGAVEDISDRKQAEEALKEREERLRAFFDAS 537

Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
            D + + + +G +L+ NRA   +FG   ++I+       L+ + P +         +   
Sbjct: 538 IDAVLLTSPDGSVLTANRAAQDMFGLTEQEIIAVGCDGLLDTSDPLLPILLEERTRTGRT 597

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS---LTMHDISEWKQEKNKLSHAKKIA 578
           R            +  L    +       +   +   + + DI+E KQ +     +  + 
Sbjct: 598 RG----ELRYRRSDGSLFEAEMSSGLYQDAQGMTLTSMVIRDITERKQAEEARLRSLDLQ 653

Query: 579 EKESSHKSDFL 589
            K      D L
Sbjct: 654 NKLIIATKDIL 664



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/179 (16%), Positives = 72/179 (40%), Gaps = 13/179 (7%)

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF-TVFLEQNTPSVMNHY 512
              ++E +SD I   +++      N A+   FG P    + +      ++    + +   
Sbjct: 284 YRLLVENSSDVIVRFDQDLRCTYANPAIESAFGQPARFYIGRSLPEAGIDDAGFAGLETI 343

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNK 570
           L + LS  + +T E     +    ++   R + ++          ++  DI+  ++++ +
Sbjct: 344 LHKTLSEGVEKTAEF-VRQTESGRQVFHCRCMPERSSNGQIDSVLVSCRDITVLREQEAR 402

Query: 571 LS-HAKKIAEKESSHK--SDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIE 625
                ++ A   +  K  +  L     ++   L  I+G+S + + N R+  L +P  +E
Sbjct: 403 YQSVFEQAAVGLARAKLDNRLL-----QVNQKLCDILGYSRDELLNLRYEDLTHPDDLE 456


>gi|16081092|ref|NP_391920.1| two-component sensor histidine kinase YycF [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|221312017|ref|ZP_03593864.1| hypothetical protein Bsubs1_21801 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221316342|ref|ZP_03598147.1| hypothetical protein BsubsN3_21707 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221321255|ref|ZP_03602549.1| hypothetical protein BsubsJ_21660 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221325538|ref|ZP_03606832.1| hypothetical protein BsubsS_21816 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|321313601|ref|YP_004205888.1| two-component sensor histidine kinase YycF [Bacillus subtilis BSn5]
 gi|23396979|sp|Q45614|YYCG_BACSU RecName: Full=Sensor histidine kinase yycG
 gi|1064813|dbj|BAA11299.1| yycG [Bacillus subtilis]
 gi|2636587|emb|CAB16077.1| two-component sensor histidine kinase [YycF] [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|291486677|dbj|BAI87752.1| hypothetical protein BSNT_06199 [Bacillus subtilis subsp. natto
           BEST195]
 gi|320019875|gb|ADV94861.1| two-component sensor histidine kinase (YycF) [Bacillus subtilis
           BSn5]
          Length = 611

 Score =  328 bits (840), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 84/374 (22%), Positives = 156/374 (41%), Gaps = 23/374 (6%)

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             +    +   E E  +L S++   +DG+   NR G I+  N    +L     E  L  P
Sbjct: 248 TRELEDAQAMTEGERRKLASVIAYMTDGVIATNRNGAIILLNSPALELLNVSRETALEMP 307

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556
            T  L           + +  S+ L    +            ++  +I ++         
Sbjct: 308 ITSLLGLQENYTFEDLVEQQDSMLLEIERDDELTVLR-----VNFSVIQREHGKIDGLIA 362

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            ++D++E ++   +              + +F+A VSHE+RTPLT +  + E +    + 
Sbjct: 363 VIYDVTEQEKMDQE--------------RREFVANVSHELRTPLTTMRSYLEALAEGAW- 407

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
                    +          ++ +VNDLL +SK +S     + E + +   +S  I   +
Sbjct: 408 -ENKDIAPRFLMVTQNETERMIRLVNDLLQLSKFDSKDYQFNREWIQIVRFMSLIIDRFE 466

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
               E+ +    +  +    +  D   + Q+  NI+SNA+ ++P GG +  S      EE
Sbjct: 467 -MTKEQHVEFIRNLPDRDLYVEIDQDKITQVLDNIISNALKYSPEGGHVTFSIDVNEEEE 525

Query: 737 VI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
           ++ + V+D G+G+   ++EK    F ++  ++  +  GTGLGL +AK MV A+ G  +  
Sbjct: 526 LLYISVKDEGIGIPKKDVEKVFDRFYRVDKARTRKLGGTGLGLAIAKEMVQAHGGDIWAD 585

Query: 796 STPAKGTLIEIIFP 809
           S   KGT I    P
Sbjct: 586 SIEGKGTTITFTLP 599


>gi|296533733|ref|ZP_06896283.1| possible sensor histidine kinase [Roseomonas cervicalis ATCC 49957]
 gi|296265955|gb|EFH12030.1| possible sensor histidine kinase [Roseomonas cervicalis ATCC 49957]
          Length = 726

 Score =  328 bits (840), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 128/757 (16%), Positives = 272/757 (35%), Gaps = 64/757 (8%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMI-GMRLCDVSD---------ILHIDPNNHIGDLLKRQ 140
           A G +  ++  L   +G      + G  + ++               +        + R 
Sbjct: 1   AAGRVALVNAALLAMLGLPPDTALAGRPMAELFRLLAFRGLYGPGDPEELARSAQAIDRA 60

Query: 141 NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
                  +L   +G       D+A+ P+        G     +           A   + 
Sbjct: 61  QPQRR--SLRAEDGR----WFDIASNPL-------PGGGWVCVATEQTAPRQQEAALMQR 107

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
            ++             +    + +         L +    +     +  +   L     P
Sbjct: 108 LRELHEALRRLPAGFGLYDAGHRLRLFNDTYETLLLLPPGTLRPGLHLAEVVALIQRHQP 167

Query: 261 LLTSEESSLPEQEDF-HTINLNQYTKKQYFGTLQNNSKESFE------YLSHRNHPSLSA 313
           +   +     ++  F          ++Q   +++  S    E           +  +   
Sbjct: 168 MGPDDLQIFADRLGFDRNRRHEGMRQRQDGRSIRFASIPMPEGGFLVTLEDVTSLRAAEN 227

Query: 314 YFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                  L    +   P    VY     L  AN ++  L    +    E    +      
Sbjct: 228 EAKRRAALLDGVLAALPHGVCVYGADQRLRMANAAYDRLMPEAASRPGEHLREI-CRRAM 286

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
              +D+ A++ +   + D     A  R+     +   +++    P               
Sbjct: 287 AGFADDEALEAIYRRQLD-FARPAHKRVR----HDGTAISGLTAPLPDG-------GHIS 334

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
           +  +       +         L +++++   G+ + +R+  ++  N   +++ G   E++
Sbjct: 335 VVSDITALHQAEEAARQRAALLQAMVDSMRQGVCLFDRQHRVVVANALAARMIGLAPEEM 394

Query: 493 L-RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE-----KITLGSTKEEKLLSLRIIIK 546
               P                  +        +LE        L +    +++ +     
Sbjct: 395 APGTPLQTLRRLQYERGEFGQGADAEGYYEEISLEPGLKLDHFLRTRPNGQVIEMSTDPT 454

Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
                  +     D++E ++ + +L  A+ +AE+ ++ K+ FLA +SHE+RTPL A+IGF
Sbjct: 455 P---DGGHVRVYTDVTEERRARAELERARAVAEEANAAKNRFLATMSHELRTPLNAVIGF 511

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
           SE +     GP       E+A  I  +G  +L +++++L+++K  +G + +    + L  
Sbjct: 512 SEALAADPSGPDT----AEFATAIHDAGRHLLALIDEILEVAKAGAGTVRVETRALYLPS 567

Query: 667 AVSEAISLVQLYANEKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725
            +  A  L++  A    I +  +    ++PR  A+ R ++Q+ LN+LSNA+ FTP+GG++
Sbjct: 568 VLEGAARLMRQSAEAAGITLTLAPPPADLPRARAEERRLRQVLLNLLSNAVKFTPAGGEV 627

Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
            +         V +RVRD+G+G+   +LE+A +PF Q+  S   R  G+GLGL LA+A+ 
Sbjct: 628 ALEAEALPGGAVEIRVRDSGIGIEPGQLERAFEPFVQLETSHARRYGGSGLGLYLARALA 687

Query: 786 DANMGKFYIFSTPAKGTLIEIIF------PLYDTSHP 816
            +      + S   +GTL  +        P +    P
Sbjct: 688 QSMGATLALESRRGEGTLARLRLAPATPSPAHPDQEP 724


>gi|114566484|ref|YP_753638.1| sensory box histidine kinase [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114337419|gb|ABI68267.1| PAS/PAC sensor signal transduction histidine kinase [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
          Length = 346

 Score =  328 bits (840), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 86/362 (23%), Positives = 167/362 (46%), Gaps = 25/362 (6%)

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
            E   + SIL    DG+ ++N +G I+  N+A   LF      +L K  T     +    
Sbjct: 5   QEKRMMQSILSCMVDGVLVLNIDGCIIQANKAAESLFLVREGVLLGKRLTQI---SENRE 61

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQ 566
           ++  + E+L+       E      +    +  +  + +K          +  HD+++ + 
Sbjct: 62  ISDMIDEVLTTGNESFTETTI---SPSTLVFRVHAVPRKDHHERIEGAIVVFHDVTDARN 118

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
                             +S F+  VSHE+RTPLT+I GF E + +       +     +
Sbjct: 119 F--------------DQIRSAFVGNVSHELRTPLTSIKGFVETLLDGAM--ENSDTCRRF 162

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
            + ID   N +  ++ DLL +S IES +  ++ +P  L  ++   +++     +EK + +
Sbjct: 163 LSIIDTETNRLTRLIEDLLTLSSIESQERIVYLKPACLLRSIRNVMNMFGPQISEKSLHV 222

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
                  +P I AD   + Q+ +N+L NAI +TP  G+I+I      +  +I  V+D+G+
Sbjct: 223 EFIHPYPMPLIQADEDLLGQVFINLLDNAIKYTPRQGKIVIQCQRRDS-RIITTVKDSGM 281

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+ +  L +  + F ++  ++  +  GTGLGL + K +V+++ G+ ++ S   KG+   +
Sbjct: 282 GIPHESLPRVFERFYRVDKARSRQQGGTGLGLSIVKHIVESHGGEVFVDSEIGKGSTFGV 341

Query: 807 IF 808
            F
Sbjct: 342 SF 343


>gi|146283877|ref|YP_001174030.1| two-component hybrid sensor and regulator [Pseudomonas stutzeri
            A1501]
 gi|145572082|gb|ABP81188.1| two-component hybrid sensor and regulator [Pseudomonas stutzeri
            A1501]
          Length = 1426

 Score =  328 bits (840), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 121/738 (16%), Positives = 247/738 (33%), Gaps = 72/738 (9%)

Query: 89   IDAHGYLKEISEE---LPKTIGNYAFKMIGMRLCDVSDI-LHIDPNNHIGDLLKRQNTWY 144
            ++    +  +S+      + +G        + L  +    L ++    +        +  
Sbjct: 606  VNQEAEIVHMSDRAGNFLRYVGGEPS----LNLTTLVHPQLRLELRTALYQAAHTGKSVE 661

Query: 145  GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
             +      +G + YV +                     +V   R                
Sbjct: 662  ARRVRLERDGRSYYVNM---------------------VVRPFRD--------------- 685

Query: 205  SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS-SLTEYYAHKDDVLKTEKYPLLT 263
               +E    +  V  ++ +     S       K+ V   L     H  + L+       T
Sbjct: 686  ---NEAGSDYMLVLFDEVEACMDSSTLEDPDTKDSVLTQLEAELQHTKERLQITMEHSET 742

Query: 264  SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG--ENL 321
            S E      E+   IN    +  +   T +   +   E L+  N+   S   +     + 
Sbjct: 743  STEELRASNEELQAINEELRSATEELETSKEELQSINEELTTVNYELKSKVDETSKINDD 802

Query: 322  TPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
                +    I   FV     + +  P    +      D       ++  LD P L+ + A
Sbjct: 803  LQNLISSTDIATVFVDRKMRIKWFTPRARDIFNVIGNDAGRSLFDITHRLDYPLLAKDAA 862

Query: 381  IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
                 L+  +R              +RE                           +  D 
Sbjct: 863  EAFEELHLVEREV-----------RDREGQHWYLARFLPYRTLDDRIEGAVLTFIDISDR 911

Query: 441  RINKRKMEIEVMQLCSILEAT-SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
            R  + ++      L  + ++T    I  ++ +G+I + N     + GY   ++L +   +
Sbjct: 912  RRAEEELRAGEAHLKLLAQSTKGYAIITLDCDGLITTWNCGAELILGYRETEVLGQTVDI 971

Query: 500  FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL--- 556
               +              +L   Q  +     + ++     L  ++  L   +   +   
Sbjct: 972  IYTEQDRQAGVPEAERQRALQHGQATD-ERWHARRDGSRCFLSGLLNPLVDGTGKVIGFA 1030

Query: 557  -TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
                D++E +Q  ++  +  +  +  +  K  F A +SHE++ PL  I   ++ +  +  
Sbjct: 1031 KIARDLTEERQRSSEQQNELESVQAANLQKDQFFAVLSHELKHPLNLIQLNTD-LVARSQ 1089

Query: 616  GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
                NP   +    I  +      I++DL+D+S+I +GK+ LHF  +   + +    ++ 
Sbjct: 1090 AVKNNPSLHKATQSIQNAVRSQSRIIDDLMDVSRIRTGKLKLHFATLRYQDVLRGIEAVF 1149

Query: 676  QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
               A  + I   +   +    I AD   + QI  N+L+NA  F+  G +I +       +
Sbjct: 1150 APLAQSENISFESFKPDAPIYIQADPTRLDQIIWNLLNNAWKFSKGGERICMQLE-REGD 1208

Query: 736  EVILRVRDTGVGMTNYELEKAMKPFGQIP-NSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
            +  L V DTG G++   L K    FGQ      Q    G G+GL L K +V+A+ G+   
Sbjct: 1209 QARLDVIDTGEGISADFLPKVFDMFGQAEMQHAQRAKHGLGIGLALVKQLVEAHNGRIEA 1268

Query: 795  FST-PAKGTLIEIIFPLY 811
            +S    +G    +  P++
Sbjct: 1269 YSEGIGRGARFSVWLPVH 1286


>gi|270307587|ref|YP_003329645.1| sensor kinase, two-component system, OmpR family [Dehalococcoides
           sp. VS]
 gi|270153479|gb|ACZ61317.1| sensor kinase, two-component system, OmpR family [Dehalococcoides
           sp. VS]
          Length = 581

 Score =  328 bits (840), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 92/454 (20%), Positives = 186/454 (40%), Gaps = 29/454 (6%)

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
            +       +   +    +    A   + ++ +              +   +  +    I
Sbjct: 156 EEVYAAVRDVDRTILLGAVVSILAAGLLAVWVAANVSRPVKELTAISRRIAQGQIDTIQI 215

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476
                 +  E      +  E +   I  + +  E  +L ++L+   DGI +++REG+I  
Sbjct: 216 DVSGKGEMEELAHAFRLMTERLRDSI--KAVSSERDRLSAVLQRMGDGIFLLDREGVISL 273

Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
            N A  ++F    E ++   F   +  +    ++       S   ++             
Sbjct: 274 LNPASERIFKLEAEGVIGHSFVEAIRDH---EIHSVFEHARSSGKQEMGFVEL----AAG 326

Query: 537 KLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
           +   L II   L   S Y + + D+SE ++ +                + DF+A +SHE+
Sbjct: 327 RRF-LGIIATPLVSQSGYLVLVQDLSELRRLE--------------KVRRDFVANISHEL 371

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTP++++   +E ++              + + I    + +  +V +L D+S IESG+  
Sbjct: 372 RTPISSLKLLTETLQEG--AASDPAVAAGFIDKIHLEVDKLAQLVTELSDLSAIESGQAV 429

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716
           L  +P  +  A+  A   ++  A    I +       +P++  D   V+Q+ +N++ NAI
Sbjct: 430 LRLQPGDISTAIKLAAERLRPQAERAGISLGVELPETLPQVKLDENRVEQVLVNLVHNAI 489

Query: 717 HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
            FTP GG+I I    T  + +++ V D+G+G+   +L +  + F ++  ++     GTGL
Sbjct: 490 KFTPKGGRIKIG-ARTQGQTLVVYVSDSGIGIPEEDLTRVFERFYKVDKARSS--GGTGL 546

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           GL ++K +V A+ G  +  S   KG       PL
Sbjct: 547 GLAISKHIVQAHGGTIWAESVYGKGATFSFSLPL 580



 Score = 42.7 bits (99), Expect = 0.26,   Method: Composition-based stats.
 Identities = 28/244 (11%), Positives = 60/244 (24%), Gaps = 17/244 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + +D  G +  ++    +     A  +IG    +   I   + ++             G
Sbjct: 262 IFLLDREGVISLLNPASERIFKLEAEGVIGHSFVE--AIRDHEIHSVFEHARSSGKQEMG 319

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
                 +E       + + A P+ S++          +V           + +      S
Sbjct: 320 F-----VELAAGRRFLGIIATPLVSQSGYLV------LVQDLSELRRLEKVRRDFVANIS 368

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
           H          +  E     +   P       +K+    +  A     L TE   L   E
Sbjct: 369 HELRTPISSLKLLTETLQEGAASDPAVAAGFIDKIHLEVDKLAQ----LVTELSDLSAIE 424

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
                 +     I+       +        +  S         P +    +  E +    
Sbjct: 425 SGQAVLRLQPGDISTAIKLAAERLRPQAERAGISLGVELPETLPQVKLDENRVEQVLVNL 484

Query: 326 VDKC 329
           V   
Sbjct: 485 VHNA 488


>gi|69247565|ref|ZP_00604399.1| PAS [Enterococcus faecium DO]
 gi|257880369|ref|ZP_05660022.1| histidine kinase [Enterococcus faecium 1,230,933]
 gi|257891027|ref|ZP_05670680.1| histidine kinase [Enterococcus faecium 1,231,410]
 gi|257894280|ref|ZP_05673933.1| histidine kinase [Enterococcus faecium 1,231,408]
 gi|258614680|ref|ZP_05712450.1| sensory box histidine kinase VicK [Enterococcus faecium DO]
 gi|260562330|ref|ZP_05832844.1| hypothetical protein EFXG_01820 [Enterococcus faecium C68]
 gi|293559840|ref|ZP_06676355.1| sensor protein YycG [Enterococcus faecium E1162]
 gi|314943533|ref|ZP_07850298.1| PAS domain S-box [Enterococcus faecium TX0133C]
 gi|314948949|ref|ZP_07852316.1| PAS domain S-box [Enterococcus faecium TX0082]
 gi|314994104|ref|ZP_07859421.1| PAS domain S-box [Enterococcus faecium TX0133B]
 gi|314998035|ref|ZP_07862927.1| PAS domain S-box [Enterococcus faecium TX0133a01]
 gi|68194789|gb|EAN09266.1| PAS [Enterococcus faecium DO]
 gi|257814597|gb|EEV43355.1| histidine kinase [Enterococcus faecium 1,230,933]
 gi|257827387|gb|EEV54013.1| histidine kinase [Enterococcus faecium 1,231,410]
 gi|257830659|gb|EEV57266.1| histidine kinase [Enterococcus faecium 1,231,408]
 gi|260073254|gb|EEW61595.1| hypothetical protein EFXG_01820 [Enterococcus faecium C68]
 gi|291606204|gb|EFF35623.1| sensor protein YycG [Enterococcus faecium E1162]
 gi|313587965|gb|EFR66810.1| PAS domain S-box [Enterococcus faecium TX0133a01]
 gi|313591471|gb|EFR70316.1| PAS domain S-box [Enterococcus faecium TX0133B]
 gi|313597771|gb|EFR76616.1| PAS domain S-box [Enterococcus faecium TX0133C]
 gi|313644648|gb|EFS09228.1| PAS domain S-box [Enterococcus faecium TX0082]
          Length = 611

 Score =  328 bits (840), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 85/418 (20%), Positives = 175/418 (41%), Gaps = 31/418 (7%)

Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR-KMEIEVMQL 454
              R   I+  R       +    K +   E         +  +     +  ME E  +L
Sbjct: 209 GEMREQAIRIARG-----DYSRKVKVHGQDELGQLADTFNQLAERIEEAQDTMEAERNRL 263

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
            S+L   +DG+   +R G +++ N     L     E+ + +     L+          L 
Sbjct: 264 DSVLSHMTDGVIATDRRGKVITINDMAVSLLDIKNEEAIGQSILTLLDIEEEYT----LR 319

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLS 572
           ++L       L++ T     ++ +L +   + +      S     +HD++E ++ + +  
Sbjct: 320 KLLEDPNEMVLDRSTSTLESDQMILRVDFSMIRRESGFISGLVAVLHDVTEQEKTERE-- 377

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
                       + +F++ VSHE+RTPLT++  + E +    +          +      
Sbjct: 378 ------------RREFVSNVSHELRTPLTSMRSYIEALSEGAW--KDEEVAPNFLKVTLD 423

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA--NEKRILIRTSF 690
             + ++ ++NDLL++S++++G   L  E V+ +E V+  +    +     EK   IR  F
Sbjct: 424 ETDRMIRMINDLLNLSRMDTGNTQLQLEYVNFNELVNFVLDRFDMMVGNQEKNYKIRREF 483

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
                 +  D   + Q+  NI++NAI ++P GG I       ++  V+L + D G+G+  
Sbjct: 484 TQRDLWVEVDTDKIIQVVDNIMNNAIKYSPDGGTITCRL-LETHNNVVLSITDQGLGIPK 542

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            +L +  + F ++  ++     GTGLGL +++ ++ A+ G  +  S   KG+   I  
Sbjct: 543 KDLNRVFERFYRVDKARARAQGGTGLGLAISREVIKAHRGAIWAESKEGKGSTFYISL 600


>gi|46201997|ref|ZP_00053969.2| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 706

 Score =  328 bits (840), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 89/513 (17%), Positives = 185/513 (36%), Gaps = 32/513 (6%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
            +  +   + +      +D  P  F+     G L   + S   L  YK  + +       
Sbjct: 217 ETQISRQTQAQTELRSILDNMPDIFYRTDAQGRLLMLSRSVESLLGYKPEEVLGQDSAFF 276

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
                    D+  +    L  +  + +    RL   +    ++L  +       +     
Sbjct: 277 H-----GSDDSRPMLVAALEAAGGSILDYELRL---RHKDGHTLWASTSSRFYYDAEGNR 328

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
               G+     + +  +  +      + ++L+A+SD I +   +G +L+ N  ++  FG 
Sbjct: 329 AGTEGVVRLIEERKQAEFHIRENQALIQAMLDASSDAIMLFRPDGTLLAVNGVMAARFGR 388

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
              ++           +        +T ++            +        L L   I  
Sbjct: 389 KASELTGSCLWDMFPPSVAKAREVAVTRVVETG-------EAIHYLDRRGELYLDNSIYP 441

Query: 548 LPFSSCY---SLTM-HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
           +P              DI+     + +L+      E+ ++    F    SH++R PL  I
Sbjct: 442 VPGVDGVPDKVAVYSRDITAQTLAEQRLAIQMTELERSNAELEQFAYVASHDLREPLRMI 501

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE---SGKMNLHFE 660
             +   +  +R+GP      +E+  +       +  +V DLLD S+IE   S  + +  E
Sbjct: 502 SSYL-SLLERRYGPKLEGDGLEFLAFARDGAKRMDRLVLDLLDFSRIERKGSPIIAMEAE 560

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720
           PV     + +A+  +    +E    +  +      R++ D   V ++  N++ NA+ +  
Sbjct: 561 PV-----LRQALRHLAPSMDECGAQVEMAEDGGAVRVMGDPEQVIRLFQNLVGNAVKYRA 615

Query: 721 SGGQIIISTT-HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
            G    +S +      E    + D G+G+     E+    F ++      R  GTG+GL 
Sbjct: 616 PGRVPRVSVSWRRDGGEWECTIADNGIGIDPQYFERIFGIFQRLHTPD--RYTGTGIGLA 673

Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
           + K +V+ + G+ ++ STP +GT      P  D
Sbjct: 674 ICKKIVERHSGRIWVDSTPGQGTAFHFTLPAAD 706



 Score = 71.6 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 33/321 (10%), Positives = 85/321 (26%), Gaps = 15/321 (4%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG- 145
           +  DA G L  +S  +   +G    +++G                 +  L     +    
Sbjct: 242 YRTDAQGRLLMLSRSVESLLGYKPEEVLGQD-SAFFHGSDDSRPMLVAALEAAGGSILDY 300

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +  L   +G  L+     ++   Y      +G  G  +V +           +       
Sbjct: 301 ELRLRHKDGHTLWAST--SSRFYYDAEGNRAGTEG--VVRLIEERKQAEFHIRENQALIQ 356

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQ---SPPPHLRMKNKVSS-LTEYYAHKDDVLKTEKYPL 261
            + +       + +    + +     +     +      S L + +       +      
Sbjct: 357 AMLDASSDAIMLFRPDGTLLAVNGVMAARFGRKASELTGSCLWDMFPPSVAKAREVAVTR 416

Query: 262 LTSEESSLPEQEDFHT--INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
           +     ++   +      ++ + Y      G     +  S +  +        A      
Sbjct: 417 VVETGEAIHYLDRRGELYLDNSIYPVPGVDGVPDKVAVYSRDITAQTLAEQRLAIQMTEL 476

Query: 320 NLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG--GLSTLLDAPKLSD 377
             +   +++       +          S+L L + +    +E  G   L+   D  K  D
Sbjct: 477 ERSNAELEQFAY-VASHDLREPLRMISSYLSLLERRYGPKLEGDGLEFLAFARDGAKRMD 535

Query: 378 NNAIKPVMLYRSDRTCIAASA 398
              +  +   R +R      A
Sbjct: 536 RLVLDLLDFSRIERKGSPIIA 556


>gi|332524691|ref|ZP_08400890.1| multi-sensor signal transduction histidine kinase [Rubrivivax
           benzoatilyticus JA2]
 gi|332107999|gb|EGJ09223.1| multi-sensor signal transduction histidine kinase [Rubrivivax
           benzoatilyticus JA2]
          Length = 811

 Score =  328 bits (840), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 131/691 (18%), Positives = 242/691 (35%), Gaps = 37/691 (5%)

Query: 138 KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG 197
           + +     + +  P  G   Y      A P+          RG        +        
Sbjct: 130 RGRTIELARISRLPAPGQLDYGGYLADASPVLPARAAVPVLRGVLAADGRPLTLVGLLDP 189

Query: 198 KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257
             L +   H  E   G S++   +  +    +P   +    ++++  +     DD+ +  
Sbjct: 190 AELARLQRHALE-DPGTSAMLVRRDGLVLSATPAAVVAAGERIAAGEDGRFTVDDLPQHV 248

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ---------------NNSKESFEY 302
                 + +  L               ++                               
Sbjct: 249 TAARTLASQPELTVLVTRDLDVALATWRRMVAWLAAGAAAAAALIAAMTFVAERSVRARE 308

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIE 361
            + R   +        E      V       F     G L + N  +L  T       + 
Sbjct: 309 AARRQRDAAQLAVALRERELSVIVKSVQELIFRTDAEGRLTFVNARWLAATGQPGERLLG 368

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
            A      L       +      +L  S     AA                +  +     
Sbjct: 369 QA------LVDLMAPSSREAVAALLAPSASGSRAAQVSFA------GTEQRLFDLAVSPL 416

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
            +    +   G   +  +    +R+++ ++     +L+     +A+++RE   ++ NRA 
Sbjct: 417 IEGGRVVGHAGSAVDVTERCAAQRELQEQLALSALMLDTMPLPVALMDREAAYVTVNRAW 476

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
            +  G P ED++ K  + +L      V   +  E+L      + E     +    + +++
Sbjct: 477 EQQSGIPREDLVGKRASDYLLPAEAEVHERHNREVLERGGSLSYESEVSQADGTRRTMAV 536

Query: 542 RIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                             + DI+E+++    +  A+ IAE+ S  KS+F+A +SHE+RTP
Sbjct: 537 TKAAVTDADGRPRGLIAALTDITEFREADRTMREARDIAEEASRAKSEFIANISHELRTP 596

Query: 600 LTAIIGFSE-VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
           L AIIGFSE  +   R     + R       I  +G  +L +VNDLLD+SKIES     H
Sbjct: 597 LQAIIGFSELGMVRGR----AHERLASMFGDIHAAGQRMLALVNDLLDVSKIESTVGTFH 652

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718
            E   L   V E    +      +R+ +  + +        D    +Q+  N+L+NA+ F
Sbjct: 653 LERTDLRPLVREVAREIDPLLARRRLHLDLALSEGPLVAKVDPMRFQQVVRNVLANAVRF 712

Query: 719 TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
           +P G  I +     +  ++++ VRD G G+   ELEK  + F Q  +  +    GTGLGL
Sbjct: 713 SPDGETITVRGDVDARNQIVVAVRDHGPGIPPGELEKIFEAFVQ-SSKTKDGSGGTGLGL 771

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            + + +V+A+ G     +    G+   I  P
Sbjct: 772 AICRKIVEAHGGSIQAENADGGGSRFTIAVP 802



 Score = 67.7 bits (164), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 23/252 (9%), Positives = 60/252 (23%), Gaps = 12/252 (4%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144
             +  DA G L  ++       G    +++G  L D+           +  LL    +  
Sbjct: 338 LIFRTDAEGRLTFVNARWLAATGQPGERLLGQALVDLMAP---SSREAVAALLAPSASGS 394

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
                    GT   +  DLA  P+        G  G  +          +   +      
Sbjct: 395 R-AAQVSFAGTEQRL-FDLAVSPL-IEGGRVVGHAGSAV--DVTERCAAQRELQEQLALS 449

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEKYPLL 262
           + + +      ++   +    +            +  +              +  +    
Sbjct: 450 ALMLDTMPLPVALMDREAAYVTVNRAWEQQSGIPREDLVGKRASDYLLPAEAEVHERHNR 509

Query: 263 TSEES--SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
              E   SL  + +    +  + T       + +        ++     +     D    
Sbjct: 510 EVLERGGSLSYESEVSQADGTRRTMAVTKAAVTDADGRPRGLIAALTDITEFREADRTMR 569

Query: 321 LTPETVDKCPIP 332
              +  ++    
Sbjct: 570 EARDIAEEASRA 581


>gi|308126034|ref|ZP_05778782.2| PAS domain protein [Vibrio parahaemolyticus K5030]
 gi|308114726|gb|EFO52266.1| PAS domain protein [Vibrio parahaemolyticus K5030]
          Length = 780

 Score =  328 bits (840), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 89/406 (21%), Positives = 175/406 (43%), Gaps = 19/406 (4%)

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
               +         +E E       + ++      L S ++A+ D I   N +G+    N
Sbjct: 119 RIKAEEAREEAMQDLENEVFQRERTQLELAERTALLRSFIDASPDLIYYRNADGVFSGCN 178

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
           RA+ +L G     ++         +     +     ++ S +   T E+        +  
Sbjct: 179 RAMEELTGKKEHQLVGLSPWDVYSKEIAQPIVDTDQKVFSDNQAITYEQWLEYPDGRKHY 238

Query: 539 LSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
             LR +                 DI+E K+ +  L       EK S  K+ F++ +SHE+
Sbjct: 239 FELRKVPFYSKDGRHLGLVGFGRDITERKRHEESL-------EKASRDKTTFISTISHEL 291

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTPL  I+G S ++ + +          ++   I+ S   + +I ND++D+ K +  K+ 
Sbjct: 292 RTPLNGIVGLSRMLLDSQL----TEEQRKHMQTINVSAITLGNIFNDIIDMDKFDRRKLE 347

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNA 715
           L   P++ ++ V+E  S+  L A +K +       +++P+ I  D   ++Q+  N++SNA
Sbjct: 348 LLPAPLNFEDFVAEIESISALMAEQKGLRFDLERLSDLPKAIEVDATRLRQVIWNLVSNA 407

Query: 716 IHFTPSGGQI-IISTTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGE 772
           + FT  GG +  +S     +   +I+ V DTG+G+   EL+K    + Q+ + +      
Sbjct: 408 MKFTKEGGVVMTVSADVEEDFATIIMEVEDTGIGIPEAELDKIFAMYYQVKSGKDNLHAV 467

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF--PLYDTSHP 816
           GTG+GL ++K +++   G   + S    G+   +    P+ +   P
Sbjct: 468 GTGIGLAVSKQLINMMDGDITVTSEEGFGSTFTVSIHVPIVELEEP 513



 Score = 48.5 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/185 (11%), Positives = 48/185 (25%), Gaps = 6/185 (3%)

Query: 34  FETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHG 93
            E E+  K     +   Q    +  Q   +     +                 +  +A G
Sbjct: 114 LEIEERIKAEEAREEAMQDLENEVFQRERTQLELAERTALLRSFIDASPDLIYYR-NADG 172

Query: 94  YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPI 152
                +  + +  G    +++G+   DV       P  +    +         +  L   
Sbjct: 173 VFSGCNRAMEELTGKKEHQLVGLSPWDVYSKEIAQPIVDTDQKVFSDNQAITYEQWLEYP 232

Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212
           +G       +L  +P YS++    G  GFG               ++  +  +       
Sbjct: 233 DGR--KHYFELRKVPFYSKDGRHLGLVGFG--RDITERKRHEESLEKASRDKTTFISTIS 288

Query: 213 GHSSV 217
                
Sbjct: 289 HELRT 293


>gi|83858320|ref|ZP_00951842.1| two-component sensor histidine kinase [Oceanicaulis alexandrii
           HTCC2633]
 gi|83853143|gb|EAP90995.1| two-component sensor histidine kinase [Oceanicaulis alexandrii
           HTCC2633]
          Length = 770

 Score =  328 bits (840), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 112/672 (16%), Positives = 222/672 (33%), Gaps = 26/672 (3%)

Query: 151 PIEGTNLYVPIDLAA---LPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
           P +G+ L    +  A          RE++  R  GI    R       L +  +   +  
Sbjct: 95  PYDGSTLETWRERLADIFRSHLEVEREYTQIRFIGIEDGGREIVRVNRLAEGYEIVDAQE 154

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
            + K      +             P    +       +       ++             
Sbjct: 155 LQRKGEEFYFQPGLMTPQDAIYTSPITVNREFGGPSGDMTPTVRTIVSVRTPEGDPFGII 214

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
            +                  Y   + ++      YL  +        F  G    PE + 
Sbjct: 215 VINSDIRVIMEEALLEAAPDYEVYISDSQDNFIHYLPDQGVVRNEFAFQAGFEP-PELLS 273

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
                                        +  I +      L+         ++   +  
Sbjct: 274 LDAEALQDVDGYTYVLHTLEAGEGGGNGLIFRILVGEPNEALMQGAYAIRQQSMLLAVSL 333

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
                  +        +   E + A+      +          + I           + +
Sbjct: 334 VVLTAIGSLLFVTSLTRPLGELTEAVLTYGQSREPIAISFSNNDEIGELGRAFMEMTQAL 393

Query: 448 EIEVMQLCS-ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
           +    +L +   E   DG+ ++  +G I S N A   +FGY  ++++ +  +V L     
Sbjct: 394 KQ--NELSANTFENIIDGLILMRPDGSIQSLNPAARVMFGYAEDELIGQDISVLLPDGVR 451

Query: 507 SVMNHYLTEI----LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
                 + +I        + +T E        E   + L +   +      + L + DIS
Sbjct: 452 QEREGAVRKISCFIEQHLVGETFEAEACMKNAEPLPVELTLSDVQRADGKLFGLMIRDIS 511

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP-LGNP 621
             KQ +                K +F++ V+HE+RTPLT+++G   +++ +       + 
Sbjct: 512 ARKQMEV--------------MKDEFVSTVNHELRTPLTSMLGSLSLLQARLQAKFKDDQ 557

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
           +     +   RS + +  +VND+LD+ KI +GK+    E V  D+ V + +   ++ A E
Sbjct: 558 KASTLLDMAQRSCDRLHHLVNDILDLEKIAAGKLEYRMEEVPCDDLVQDVVESHRVLAEE 617

Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
             +        + P +  D+    Q  +N+LSNA  ++P+G  + I T    +  + + V
Sbjct: 618 HDVQFVLDLKADDPPVRLDVSRFTQALVNLLSNAAKYSPAGETVTILTRRLEDGHIRISV 677

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            D G G+      +    F Q  +S   R  G GLGL + K +V+A  G+    +   +G
Sbjct: 678 ADNGPGIPEEFQPRIFDRFSQADSSTTRRVGGNGLGLNITKNLVEAFDGEISFDTKVGEG 737

Query: 802 TLIEIIFPLYDT 813
           T+  I+ P+ D 
Sbjct: 738 TVFHILLPIVDA 749


>gi|330982346|gb|EGH80449.1| PAS protein [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 637

 Score =  328 bits (840), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 113/426 (26%), Positives = 201/426 (47%), Gaps = 18/426 (4%)

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
           AR+H +Q N +       +  +   +         +          +R +     +L  I
Sbjct: 215 ARVHQVQRNAQRLALGHPLLPQPPEKDEIGQLGTRLVEAGQLLAERERALRDNEERLRLI 274

Query: 458 LEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           +E   D GI  ++R G I + N    ++ GY  ++I+ + F+VF  Q            +
Sbjct: 275 IEGVKDYGIFALDRNGYITTWNAGAERIKGYTEQEIIGQHFSVFYLQQECPQHPDM--AL 332

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNKLS 572
               +     +      K+       ++I     S      +S    DIS+ +  +  L 
Sbjct: 333 HEATVNGRYTEEGWRQRKDGSRFWASVVITAQYDSNDELRGFSKITRDISDRRVAEIALG 392

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
            A++ AE+ S  KS+FL+R+SHE+RTPL +I+GF+++++                 +I R
Sbjct: 393 TAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLLEMD-----SPASQRPQIGHILR 447

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR--TSF 690
           +G  +L ++N++LDI++IE+G ++L  EPVSL   + EA+ LV   A +  I ++   + 
Sbjct: 448 AGQHLLKLINEVLDIARIEAGHVSLILEPVSLSSVLEEALVLVSPMAADANIELKPLPNL 507

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
            + I  ++AD + + Q+ LN+LSNAI +    GQ+ I    T+  +V + V DTG G+  
Sbjct: 508 PDEIG-VVADRQRLIQVLLNLLSNAIKYNRPAGQVRIEIEQTAE-QVTVSVVDTGYGIAP 565

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             + +  KPF ++        EGTGLGL L+K+M++   G   + +TP +G    +  P 
Sbjct: 566 ERIGQLFKPFERLDA--NPSVEGTGLGLALSKSMLEMMHGTLSVQNTPDEGCRFILALPF 623

Query: 811 YDTSHP 816
                P
Sbjct: 624 VRVQPP 629



 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/259 (9%), Positives = 69/259 (26%), Gaps = 20/259 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH--IDPNNHIGDLLKRQNTW 143
            + +D +GY+   +    +  G    ++IG               P+  + +       +
Sbjct: 283 IFALDRNGYITTWNAGAERIKGYTEQEIIGQHFSVFYLQQECPQHPDMALHEATVNGR-Y 341

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGF---------RGFGIVHVNRVDNDPR 194
             +      +G+  +  + + A   Y  N E  GF         R    + +     +  
Sbjct: 342 TEEGWRQRKDGSRFWASVVITAQ--YDSNDELRGFSKITRDISDRRVAEIALGTAREEAE 399

Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254
              +   +  S +    +   +       +    SP         +    ++     + +
Sbjct: 400 RASRAKSEFLSRMSHELRTPLNSILGFAQLLEMDSPASQRPQIGHILRAGQHLLKLINEV 459

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
                 L  +   +         ++L+   ++         +  + E     N P     
Sbjct: 460 ------LDIARIEAGHVSLILEPVSLSSVLEEALVLVSPMAADANIELKPLPNLPDEIGV 513

Query: 315 FDEGENLTPETVDKCPIPF 333
             + + L    ++      
Sbjct: 514 VADRQRLIQVLLNLLSNAI 532


>gi|298246762|ref|ZP_06970567.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297549421|gb|EFH83287.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 863

 Score =  328 bits (840), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 99/686 (14%), Positives = 225/686 (32%), Gaps = 43/686 (6%)

Query: 132 HIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN 191
            I     R  T   +  + P   T+L + I +    +   +++       G         
Sbjct: 197 AIARA-ARGETVRFEAKIHPR--TDLSLDILMTITALRDASQQVEYLICAG--RDITERK 251

Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD 251
                 + L      L  + +      +E  +                   L   +    
Sbjct: 252 HAEDELRVLIDAIPQLVWMAR--PDGSREYSNRRWCDYTDMTSEQYQGDGWLQAIHPDDQ 309

Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
             +       + ++     E                     +++   + ++         
Sbjct: 310 QHVLEVWQRAVQTDGPYETELRLRQGTTGAYRWFLVRAMQHKDDQGTTLKWFGTCTDIDD 369

Query: 312 SAYFDEGENLTPE----TVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
               ++    + E      +  P   +     G L Y N            + ++  G  
Sbjct: 370 QKQAEQRLKASEENWRVLAETVPQLVWTARPDGGLDYVNQR-CRDLAQTDAEHLQGDGW- 427

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
            +    P+  +   +       +      +  RL   +                 ++  +
Sbjct: 428 -SQFVHPEDLE-RVLALWRHAFATGESFESEHRLKDCRT--GAYRWFLVRAMPMRDETGQ 483

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
            +   G   +  D +  +  +     +  +++++   GI     E  I+  N  + ++ G
Sbjct: 484 TVKWFGTGTDIEDRKRIEEALRQSQERASTLMDSNIIGIFATEGE-QIVDANDTLLRMTG 542

Query: 487 YPVEDILRKPFTVF--LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI- 543
           Y  ED+                +       E+ +       EK  +   K+   L + + 
Sbjct: 543 YTREDLRAGRINWMSMTAPEYLARTRQAQQELATQQYLTPYEKEYVC--KDGSRLPVLVG 600

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
            +     SS     + D S  K+ + +              K  F++  SHE++TPLTA+
Sbjct: 601 RVALQHHSSQAIAFVLDNSARKELEQR--------------KDAFISTASHELKTPLTAM 646

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
              + ++ +++    G        + ++     V  +V +LLD+SKI++ ++    E V 
Sbjct: 647 KLQA-ILLHRQLAKQGLQASAPTLSSMETQIIKVTRLVEELLDVSKIQADRLEYLQETVG 705

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
           LD  + E +  +Q       I++R +   ++   + D   + Q+ +N++SNAI ++P   
Sbjct: 706 LDALLHEVVDTMQPIHATHTIVVRGAAPCSL---VGDKDRLGQVFINLISNAIKYSPGAE 762

Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
            + I  + +    V +RV D G+G+   + +K  + F +  +  Q    G G+GL +   
Sbjct: 763 TVEIDLSASEE-TVAVRVHDHGLGIPRAQCDKIFERFYRATDPNQKAIPGLGMGLYIVAE 821

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFP 809
           +V  + G   + S   KG+   +  P
Sbjct: 822 IVRHHGGTLTVESEVGKGSTFTVTLP 847



 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 30/387 (7%), Positives = 85/387 (21%), Gaps = 17/387 (4%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQNTW 143
             W     G  +  +          + +  G                 +    ++    +
Sbjct: 267 LVWMARPDGSREYSNRRWCDYTDMTSEQYQGDGWLQAIHPDDQQHVLEVWQRAVQTDGPY 326

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +        T  Y    + A+         +  + FG               K  ++ 
Sbjct: 327 ETE-LRLRQGTTGAYRWFLVRAMQHKDDQG--TTLKWFGTCTDIDDQKQAEQRLKASEEN 383

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE-----YYAHKDDVLKTEK 258
           +  L E         +    +         L   +      +      +    + +    
Sbjct: 384 WRVLAETVPQLVWTARPDGGLDYVNQRCRDLAQTDAEHLQGDGWSQFVHPEDLERVLALW 443

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS----HRNHPSLSAY 314
                + ES   E                    +++ + ++ ++        +   +   
Sbjct: 444 RHAFATGESFESEHRLKDCRTGAYRWFLVRAMPMRDETGQTVKWFGTGTDIEDRKRIEEA 503

Query: 315 FDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
             + +      +D   I  F      +  AN + L +T Y   +D+         + AP+
Sbjct: 504 LRQSQERASTLMDSNIIGIFATEGEQIVDANDTLLRMTGYTR-EDLRAGRINWMSMTAPE 562

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
                      L  + +           +  +      +      + +            
Sbjct: 563 YLARTRQAQQELA-TQQYLTPYEKEY--VCKDGSRLPVLVGRVALQHHSSQAIAFVLDNS 619

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEAT 461
                 +     +     +L + L A 
Sbjct: 620 ARKELEQRKDAFISTASHELKTPLTAM 646



 Score = 81.2 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 40/274 (14%), Positives = 87/274 (31%), Gaps = 22/274 (8%)

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIA 363
             N                  ++  P   FV      + YAN S   L+     +    +
Sbjct: 1   MSNAKQTKRVTPGSRETLLHMLETLPDAVFVVDDTEAIIYANASARTLSGTTREEACGTS 60

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
                L         +  + V   +  R     +     +       L ++  P ++   
Sbjct: 61  LWCGALHL----VSPSLYQAVHKAKETREPTEVT----YVSPATNRWLHVSLSPTDEGLA 112

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
                       E ++    +  +         +L++  DG+ I+  EG++L  N+    
Sbjct: 113 L--------FFHEQLEPLPLQHALSQNEHLYRDLLDSVGDGVMIVTPEGLVLDINQLSLA 164

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR-QTLEKITLGSTKEEKLLSLR 542
                 E ++  P T     ++ SV+  +L   ++   R +T+        + +  L + 
Sbjct: 165 DAHLQWEVVVGTPLTDLPAWSSDSVVQEHLRTAIARAARGETVRFEAKIHPRTDLSLDIL 224

Query: 543 IIIKKLPFSSCYSLTM----HDISEWKQEKNKLS 572
           + I  L  +S     +     DI+E K  +++L 
Sbjct: 225 MTITALRDASQQVEYLICAGRDITERKHAEDELR 258


>gi|242242957|ref|ZP_04797402.1| possible histidine kinase [Staphylococcus epidermidis W23144]
 gi|242233558|gb|EES35870.1| possible histidine kinase [Staphylococcus epidermidis W23144]
 gi|319401006|gb|EFV89225.1| his Kinase A domain protein [Staphylococcus epidermidis FRI909]
          Length = 565

 Score =  328 bits (840), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 88/397 (22%), Positives = 184/397 (46%), Gaps = 31/397 (7%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRK--MEIEVMQLCSILEATSDGIAIINREGIIL 475
                   +      +   D+  R+ K     +I+  +L + LE     + +I++ G I+
Sbjct: 191 VRVPESNVKETRALFVTTNDLARRLQKLNNSQKIQSNRLKTTLENIPSSVLMIDKHGEIV 250

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
             N A  ++F  P + +  K +  F++ +   ++          +     +     +   
Sbjct: 251 VANHAYYQVFN-PDQMVENKSYIGFIDDSIEKLIIESFR----TEKVIYEQLEVDINNVH 305

Query: 536 EKLLSLRIIIKKLPFS---SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
            K   +  I              + +HDI+  ++ +              + + +F+A V
Sbjct: 306 TKYFDVSCIPILTKSKKNLQGMVVVLHDITNLQKLE--------------NLRREFVANV 351

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIE 651
           SHE++TP+T+I GF+E +     G   + + ++ + N I +  N +  +V DLLD+S IE
Sbjct: 352 SHELKTPITSIKGFAETLIE---GAKNDEQSLDMFLNIILKESNRIESLVTDLLDLSHIE 408

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
             K  L    ++L E     I  +Q  A  KRI I++    ++  I A    + Q+  N+
Sbjct: 409 QQK-ELEINYMNLSELAINIIDNLQTQAQNKRIKIQSEIEKDVI-IEAHENKIAQVITNL 466

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           LSNAI+++    ++I+   + ++ +V L ++D G+G++  + ++  + F ++  ++    
Sbjct: 467 LSNAINYSSEDNKVIVRV-YRNDNKVYLEIQDYGIGISETDQKRIFERFYRVDKARSRDS 525

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            GTGLGL + K +V+A+ G+  + S P KG++ +++F
Sbjct: 526 GGTGLGLSITKHIVEAHNGRIDVKSEPGKGSIFKVLF 562


>gi|239909191|ref|YP_002955933.1| putative sensor histidine kinase [Desulfovibrio magneticus RS-1]
 gi|239799058|dbj|BAH78047.1| putative sensor histidine kinase [Desulfovibrio magneticus RS-1]
          Length = 722

 Score =  328 bits (840), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 123/673 (18%), Positives = 226/673 (33%), Gaps = 52/673 (7%)

Query: 167 PIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFS 226
            +          R   +V   R D+      ++            +          D+ +
Sbjct: 54  AVSDIQAAAGEMRALALVVAARGDDAAAVAYRQQADIAVQSLRELRHLVDASPGLADVAA 113

Query: 227 QQSPPPHLRMKNKVSSLTEYYAHKDDV-------------------LKTEKYPLLTSEES 267
             +  P L      +         D                     L T +  +    ++
Sbjct: 114 IAAHLPKLMTIQAQALELADQGRTDAAWDMLHGRDYESLLAELHLCLTTCQASVKAGLDA 173

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
            L  Q       L           L +           R +    +     E     T +
Sbjct: 174 LLATQAGHARTGLAAIAVATPILALGSLLLLRRAARVSRANDEARSELAASERRFRGTFE 233

Query: 328 KCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
              +    V   G     N  F  +T Y  V+  +     +        +D   +  ++ 
Sbjct: 234 LAAVGIAHVGLDGRFLRVNARFRDITGYDVVE-FDRLDFAAITYPDDLDADLERVSDLL- 291

Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
                     S     ++ +  + + +T       +     +    +  +    +  +  
Sbjct: 292 ---SGRLATYSMDKRYVRKDG-SLVWITLTVSLVRDDDGAPLFFISVIADVSARKAAEAA 347

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
                  +  +L+A SD + + +  G +L+ N A +   G P E I+ K F         
Sbjct: 348 ARDNAAAVRELLDAASDRVVVADASGQVLAVNAAAAAGLGLPGEAIVGKTFAEVFPGKVG 407

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQ 566
                 L   + L  R        G   +     L             +L   D +   Q
Sbjct: 408 ENRLAQLRRAVELGRRMRFTDERAGILFDIIAAPL---PTPADALPRAALFARDATAMIQ 464

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
                   ++ AE  S  KSDFLA VSHE+RTPL  IIG  +V+         +P   + 
Sbjct: 465 A-------RQAAEAASQAKSDFLANVSHELRTPLNGIIGMGQVLAASNL----DPDQRQC 513

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
              I+++   +L +V +LLD+S++ES K+ L  +P  L   +    + +   A EK + +
Sbjct: 514 LADIEQAAGALLHLVENLLDLSRLESEKLALDNQPFVLSSILQGVEATLAPLAQEKGLEL 573

Query: 687 RTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT----------SNE 735
             + A ++P +   D   ++Q  LN+  NA+ FTP+G  + I                  
Sbjct: 574 SAAVAGDVPELLYGDGGKLRQALLNLGGNAVKFTPAGS-VTIEAYCAKPCVLAGPEGETV 632

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
           EV   VRDTG+G+   + E+  + F Q+  S   R  GTGLGL +++ +++A  G+  + 
Sbjct: 633 EVGFAVRDTGIGIAKADQERIFERFTQVDASSTRRFGGTGLGLAISRGLIEAMGGELAVD 692

Query: 796 STPAKGTLIEIIF 808
           S   +G++     
Sbjct: 693 SEHGQGSVFRFCL 705



 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/254 (7%), Positives = 63/254 (24%), Gaps = 13/254 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQ-NTWYGK 146
           +   G    ++       G    +   +    ++    +D +   + DLL  +  T+   
Sbjct: 242 VGLDGRFLRVNARFRDITGYDVVEFDRLDFAAITYPDDLDADLERVSDLLSGRLATYSMD 301

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                 +G+   V I L    +   +     F    ++          A  +        
Sbjct: 302 KRYVRKDGSL--VWITLTVSLVRDDDGAPLFF--ISVIADVSARKAAEAAARDNAAAVRE 357

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH------KDDVLKTEKYP 260
           L +       V      + +  +           + + + +A        ++ L   +  
Sbjct: 358 LLDAASDRVVVADASGQVLAVNAAAAAGLGLPGEAIVGKTFAEVFPGKVGENRLAQLRRA 417

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH-RNHPSLSAYFDEGE 319
           +         ++      ++           L   +  + +  +  +   +  A      
Sbjct: 418 VELGRRMRFTDERAGILFDIIAAPLPTPADALPRAALFARDATAMIQARQAAEAASQAKS 477

Query: 320 NLTPETVDKCPIPF 333
           +       +   P 
Sbjct: 478 DFLANVSHELRTPL 491


>gi|66045179|ref|YP_235020.1| PAS [Pseudomonas syringae pv. syringae B728a]
 gi|63255886|gb|AAY36982.1| PAS [Pseudomonas syringae pv. syringae B728a]
          Length = 779

 Score =  328 bits (840), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 114/426 (26%), Positives = 201/426 (47%), Gaps = 18/426 (4%)

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
           AR+H +Q N +       +  +   +         +          +R +     +L  I
Sbjct: 215 ARVHQVQRNAQRLALGHPLLPQPPEKDEIGQLGTRLVEAGQLLAERERALRDNEERLRLI 274

Query: 458 LEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           +E   D GI  ++R G I + N    ++ GY  ++I+ + F+VF  Q            +
Sbjct: 275 IEGVKDYGIFALDRNGFITTWNAGAERIKGYTEQEIIGQHFSVFYLQQECPQHPDM--AL 332

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNKLS 572
               +     +      K+       ++I     S      +S    DIS+ +  +  L 
Sbjct: 333 HEATVNGRYTEEGWRQRKDGSRFWASVVITAQYDSNDELRGFSKITRDISDRRVAEIALG 392

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
            A++ AE+ S  KS+FL+R+SHE+RTPL +I+GF++++                  +I R
Sbjct: 393 TAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLL-----DMDSPASQRPQIGHILR 447

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR--TSF 690
           +G  +L ++N++LDI++IE+G ++L  EPVSL   + EA+ LV   A +  I ++   S 
Sbjct: 448 AGQHLLKLINEVLDIARIEAGHVSLILEPVSLSNVLEEALVLVSPMAADANIELKPLPSL 507

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
            ++I  ++AD + + Q+ LN+LSNAI +    GQ+ I     +  +V + V DTG G+  
Sbjct: 508 PDDIG-VVADRQRLIQVLLNLLSNAIKYNRPAGQVRIEIEQIAE-QVTISVVDTGYGIAP 565

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             + +  KPF ++        EGTGLGL L+K+M++   G   + +TP +G    +  PL
Sbjct: 566 ERIGQLFKPFERLDA--NPSVEGTGLGLALSKSMLEMMHGTLSVQNTPDEGCRFILALPL 623

Query: 811 YDTSHP 816
                P
Sbjct: 624 VRVQPP 629



 Score = 46.6 bits (109), Expect = 0.019,   Method: Composition-based stats.
 Identities = 22/259 (8%), Positives = 69/259 (26%), Gaps = 20/259 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH--IDPNNHIGDLLKRQNTW 143
            + +D +G++   +    +  G    ++IG               P+  + +       +
Sbjct: 283 IFALDRNGFITTWNAGAERIKGYTEQEIIGQHFSVFYLQQECPQHPDMALHEATVNGR-Y 341

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGF---------RGFGIVHVNRVDNDPR 194
             +      +G+  +  + + A   Y  N E  GF         R    + +     +  
Sbjct: 342 TEEGWRQRKDGSRFWASVVITAQ--YDSNDELRGFSKITRDISDRRVAEIALGTAREEAE 399

Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254
              +   +  S +    +   +       +    SP         +    ++     + +
Sbjct: 400 RASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSPASQRPQIGHILRAGQHLLKLINEV 459

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
                 L  +   +         ++L+   ++         +  + E     + P     
Sbjct: 460 ------LDIARIEAGHVSLILEPVSLSNVLEEALVLVSPMAADANIELKPLPSLPDDIGV 513

Query: 315 FDEGENLTPETVDKCPIPF 333
             + + L    ++      
Sbjct: 514 VADRQRLIQVLLNLLSNAI 532


>gi|88858789|ref|ZP_01133430.1| putative sensor protein [Pseudoalteromonas tunicata D2]
 gi|88819015|gb|EAR28829.1| putative sensor protein [Pseudoalteromonas tunicata D2]
          Length = 1027

 Score =  328 bits (840), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 101/490 (20%), Positives = 205/490 (41%), Gaps = 39/490 (7%)

Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
           + ++  ++   ++   +    L  L     +  + A+      R      A S++   + 
Sbjct: 265 DATWQQISGNSAIPQYDQILALKFLQQDYWMVGSKALLSTRGNRYLNLVGALSSQQVEVI 324

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
           W+ + S  +  +                   + +        +  +  +  +I+  +SD 
Sbjct: 325 WHHQRSAVIALMVVIFLIFNILIFVYQKYLNKFLS-------LYDKQSRYEAIVAGSSDA 377

Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF-LEQNTPSVMNHYLTEILSLDLRQ 523
           I  +++ G ILS N + +  F         +  +       T ++    LT ++     Q
Sbjct: 378 IINVDKSGTILSWNDSAAYFFDLRENQAQVRKISNIVFSHETNALDTDVLTSVIEQKKPQ 437

Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPF---SSCYSLTMHDISEWKQEK------------ 568
             E   + +  E+++LS+ +          +   +  + DI+  +  +            
Sbjct: 438 VFEVEGISNAGEKRILSISLSPVISQSTVIAPSVAALIRDITASRMNEIKIQSMNQSLEL 497

Query: 569 ------NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
                  +L HA ++A   +  KS F+A +SHEIRTPL  I G  E+++ +      + +
Sbjct: 498 QVAERTQELKHATELAIAANQSKSAFVANISHEIRTPLNGIAGMMELLQREDL----SDK 553

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
            + Y      S + +  ++NDLLD+SKIESGK+++     +L E +S  I+ + L  +EK
Sbjct: 554 QLNYLKMAKSSVSTLTVLINDLLDLSKIESGKLDIELVQFNLIETMSSVINSMALRCDEK 613

Query: 683 RILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST----THTSNEEV 737
            + +   +       +++D   +KQ+ +N++ NAI FT  G QI++S            +
Sbjct: 614 GLELLFDWTQIQHEELISDAYRIKQVLVNLIGNAIKFTAQG-QIVVSAKTYAAAQEQIWL 672

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
            + + DTG+G+T  +  K  +PF Q   +      GTGLGL +++ +V    G+  I S 
Sbjct: 673 EVVITDTGIGLTPEQQAKLFRPFTQAHANIAKNFGGTGLGLSISQQLVQLLGGEITIHSV 732

Query: 798 PAKGTLIEII 807
             +G+     
Sbjct: 733 VEQGSTFTFT 742


>gi|258620901|ref|ZP_05715935.1| Aerobic respiration control sensor protein ArcB [Vibrio mimicus
           VM573]
 gi|258586289|gb|EEW11004.1| Aerobic respiration control sensor protein ArcB [Vibrio mimicus
           VM573]
          Length = 785

 Score =  328 bits (840), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 85/400 (21%), Positives = 165/400 (41%), Gaps = 19/400 (4%)

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
               +         +E E       + ++      L S ++A+ D I   N +G     N
Sbjct: 122 RIKAEEAREEAMLDLENEVYQREKTQLELAERTALLRSFIDASPDLIYYRNAKGEFSGCN 181

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
           RA+ +L G    +++         +     +     ++ + +   T E+        +  
Sbjct: 182 RAMEELTGKRESELVGLTPWDVYRKEIAQSIVETDQQVFNHNTAITYEQWLEYPDGRKSF 241

Query: 539 LSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
             LR +                 DI+E K+ +  L       EK S  K+ F++ +SHE+
Sbjct: 242 FELRKVPFYSKDGRHLGLVGFGRDITERKRHEESL-------EKASRDKTTFISTISHEL 294

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTPL  I+G S ++ +            ++   I+ S   + +I ND++D+ K +  K+ 
Sbjct: 295 RTPLNGIVGLSRMLLDTPLSS----EQRKHLQTINVSAVTLGNIFNDIIDMDKFDRRKLE 350

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNA 715
           L    ++ +E V+E   L  L A +K +        ++P  +  D   ++Q+  N++SNA
Sbjct: 351 LFPAALNFEEFVAEIEVLAALMAEQKGLRFDLERLTDLPSLVEVDATRLRQVLWNLISNA 410

Query: 716 IHFTPSGGQI-IISTTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGE 772
           + FT  GG +  +S        ++ + V DTG+G+   E EK    + Q+ + +      
Sbjct: 411 MKFTKEGGVVMTVSAECDEQYADITIEVEDTGIGIPEEEQEKIFAMYYQVKSGKDNLHAV 470

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF--PL 810
           GTG+GL +++ ++    G   + S    G+   +    PL
Sbjct: 471 GTGIGLAVSRQLIKLMGGDISVNSEEGFGSTFTVTIRVPL 510



 Score = 47.7 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 42/311 (13%), Positives = 81/311 (26%), Gaps = 21/311 (6%)

Query: 19  KGNTQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVS---NTNYLDSENTFV 75
           +   Q+L++K   N  +  +  +E    +   +    D   E          L      +
Sbjct: 98  RSRDQELNQKLQQNIVKLNQEIEERIKAEEAREEAMLDLENEVYQREKTQLELAERTALL 157

Query: 76  FDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD 135
              I  +    +  +A G     +  + +  G    +++G+   DV              
Sbjct: 158 RSFIDASPDLIYYRNAKGEFSGCNRAMEELTGKRESELVGLTPWDVYRKEIAQSIVETDQ 217

Query: 136 LLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA 195
            +   NT       W           +L  +P YS++    G  GFG             
Sbjct: 218 QVFNHNTAITYE-QWLEYPDGRKSFFELRKVPFYSKDGRHLGLVGFG--RDITERKRHEE 274

Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY-------- 247
             ++  +  +                    S+      L  + +    T           
Sbjct: 275 SLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDTPLSSEQRKHLQTINVSAVTLGNI 334

Query: 248 ------AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301
                   K D  K E +P   + E  + E E    +   Q   +     L +      E
Sbjct: 335 FNDIIDMDKFDRRKLELFPAALNFEEFVAEIEVLAALMAEQKGLRFDLERLTDL-PSLVE 393

Query: 302 YLSHRNHPSLS 312
             + R    L 
Sbjct: 394 VDATRLRQVLW 404


>gi|218779536|ref|YP_002430854.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218760920|gb|ACL03386.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 1020

 Score =  328 bits (840), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 113/696 (16%), Positives = 228/696 (32%), Gaps = 63/696 (9%)

Query: 155 TNLYVPIDLAALPIYSRNR--EFSGF-RGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
           ++++V + ++ LP          + F  G+ +  V +       L K+ ++++  L +  
Sbjct: 208 SDIFVSLGMSPLPYTLEYGFLAITAFMTGYAVDQVVKASFAQEQL-KQNEERYQVLADNA 266

Query: 212 KGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSS------LTEYYAHKDDVLKTEKYPLLT 263
                       +         L      +  +      LT   A     +   +  L  
Sbjct: 267 GFTMWTADLDLRLTHISPSIETLTGFTPEEALAMGFDEILTPESASLGMTVLKTQQALEL 326

Query: 264 SEESSLPEQEDFH----TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
                 P    F       N   +  +     L++ S      +      S     +E  
Sbjct: 327 ENPGRSPGSVQFEVQIKRKNGPPFWAENTGAFLRDGSGVPIGVVGLTRDISSQKAAEEER 386

Query: 320 NLTPETVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
                 V+       +     + FY N +F  L  Y+   D+  AGGL ++   P+  D 
Sbjct: 387 LFIQRAVESSSDAIAMCDADFVHFYHNEAFANLFGYRWPKDLVEAGGLLSIFADPRQGDE 446

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
            A   +         +         + NR   +         +++F   +   GI  +  
Sbjct: 447 AATGLIEQGSWTGEVMT--------RSNRGRHILTDLRANVVSDKFGNLLGLIGIYTDIT 498

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
           +     + ++    +   + E T+D I   +        + +V ++ GY  E++L++ F+
Sbjct: 499 EKIAVTKALKGSEERYRLVAENTNDVIWTTDLNLKWTYVSPSVFRMRGYTPEEVLQQDFS 558

Query: 499 VFLEQNTPSVMNHYLTEILSLD------LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
             L + +   + H  TE L  +        +++        ++   +        +    
Sbjct: 559 EVLTRESTQDVLHIFTEELEKELTDPEPEPRSIVLDMEFLKRDGGTVWSESACSFMRDDD 618

Query: 553 C----YSLTMHDISEWKQEKNKLSHAKKIAEKES--SHKSDFLARVSHEIRTPLTAIIGF 606
                      DI+E ++ +      ++  ++             V+H+    L  I G 
Sbjct: 619 GQVFGILGISRDITERRKAEEDRLKLEERLQQAQKLEAMGTLAGGVAHDFNNLLMGIQGN 678

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
             ++  +      NP Y      I++       +   LL  ++  SGK        +L++
Sbjct: 679 LSLMLLKL--EPSNPLYGR-IKNIEQHIKNATGLTRQLLGFAR--SGK--YQVTAANLND 731

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726
            VS   S+       K I I+ +   +   +  D   ++Q+ LN+L NA      GG I 
Sbjct: 732 LVSRTSSMFGRT--RKEIRIKENLQADAWPVEVDHGQIEQVLLNLLVNAWQAMSGGGIIY 789

Query: 727 ISTT-------------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
           I +                  + V L V DTG GM+    ++   PF            G
Sbjct: 790 IRSENVVLDQRFASSYGIPPGKYVRLSVTDTGSGMSPEVRKRVFDPFFTTKE-ISR---G 845

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           TGLGL  A  ++  + G   ++S   +G    I  P
Sbjct: 846 TGLGLASAYGIIQNHGGVINVYSQEGQGATFNIYLP 881



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 38/396 (9%), Positives = 93/396 (23%), Gaps = 28/396 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI---DPNNHIGDLLK---- 138
            W  D    L  IS  +    G    + + M   ++                  L+    
Sbjct: 270 MWTADLDLRLTHISPSIETLTGFTPEEALAMGFDEILTPESASLGMTVLKTQQALELENP 329

Query: 139 --RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRAL 196
                +   +  +    G       +     +   +    G    G+             
Sbjct: 330 GRSPGSVQFEVQIKRKNGPPF--WAENTGAFLRDGSGVPIGV--VGLTRDISSQKAAEEE 385

Query: 197 GKRLDK------KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK 250
              + +          + +    H    +   ++F  + P   +     +S   +     
Sbjct: 386 RLFIQRAVESSSDAIAMCDADFVHFYHNEAFANLFGYRWPKDLVEAGGLLSIFADPRQGD 445

Query: 251 DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310
           +      +    T E  +   +      +L        FG L         Y       +
Sbjct: 446 EAATGLIEQGSWTGEVMTRSNRGRHILTDLRANVVSDKFGNLLGLIGI---YTDITEKIA 502

Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEI--AGGLS 367
           ++      E       +      +         Y +PS   +  Y   + ++   +  L+
Sbjct: 503 VTKALKGSEERYRLVAENTNDVIWTTDLNLKWTYVSPSVFRMRGYTPEEVLQQDFSEVLT 562

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
                  L          L   +    +    +  ++ +     + +   F   +   + 
Sbjct: 563 RESTQDVLHIFTEELEKELTDPEPEPRSIVLDMEFLKRDGGTVWSESACSF-MRDDDGQV 621

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSI--LEAT 461
               GI  +  + R  +        +L     LEA 
Sbjct: 622 FGILGISRDITERRKAEEDRLKLEERLQQAQKLEAM 657



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/148 (10%), Positives = 43/148 (29%), Gaps = 13/148 (8%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL-HIDPNNHIGDLLKRQNTWY 144
            W  D +     +S  + +  G    +++     +V       D  +   + L+++ T  
Sbjct: 525 IWTTDLNLKWTYVSPSVFRMRGYTPEEVLQQDFSEVLTRESTQDVLHIFTEELEKELTDP 584

Query: 145 GKTTL--------WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRAL 196
                           +G    V  + A   +   + +  G  G  I             
Sbjct: 585 EPEPRSIVLDMEFLKRDGGT--VWSESACSFMRDDDGQVFGILG--ISRDITERRKAEED 640

Query: 197 GKRLDKKFSHLHEIKKGHSSVEKEKYDI 224
             +L+++     +++   +      +D 
Sbjct: 641 RLKLEERLQQAQKLEAMGTLAGGVAHDF 668


>gi|168214234|ref|ZP_02639859.1| sensory box histidine kinase [Clostridium perfringens CPE str.
           F4969]
 gi|170714323|gb|EDT26505.1| sensory box histidine kinase [Clostridium perfringens CPE str.
           F4969]
          Length = 571

 Score =  328 bits (840), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 85/375 (22%), Positives = 172/375 (45%), Gaps = 39/375 (10%)

Query: 444 KRKMEIEVMQ-------LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             ++EI + +       L +IL++   G+   +R+  +L  N    K+FG   E I  K 
Sbjct: 226 AEQLEITMERFKDKQNGLEAILKSMGSGVIAFDRDMNVLMINPYAKKIFGISGEIIGNKL 285

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR-IIIKKLPFSSCYS 555
                ++            +         E     +  + K+L +R   I   P      
Sbjct: 286 LDYITDKEVLKAFFDEKDRV---------EIEVNYND-DPKILKIRKASIINEPEIIGTV 335

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
           + + DI++ K+ +              + +S F+A +SHE++TPLT+I GF+E ++    
Sbjct: 336 VVIQDITDIKKLE--------------NMRSQFVANISHELKTPLTSIKGFAETLR---- 377

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
               +    ++ + ID   + +  ++ D+L + +IE  +  +  E  ++DE + +   L+
Sbjct: 378 YVDDDETRNKFLSIIDEESDRLARLLEDILCLYEIEQKRSTV-LEEFNVDEEIEKVYMLL 436

Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
              A +K + I     +N   ++ D    KQ+ LN++SN++ +T  GG++ +  ++ S+ 
Sbjct: 437 NDQAKKKGVEIFLDTNSNC-VLMGDKDKFKQMLLNLVSNSVKYTEKGGKVRVE-SYNSDM 494

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            +IL + D G+G++  +L +  + F ++  ++     GTGLGL + K +V    G+  + 
Sbjct: 495 NLILVIEDNGIGISAEDLPRIFERFYRVDKARSRESGGTGLGLAIVKHIVRLFDGEINVT 554

Query: 796 STPAKGTLIEIIFPL 810
           S    GT I I  P+
Sbjct: 555 SELGVGTKIVIAIPI 569


>gi|299133218|ref|ZP_07026413.1| multi-sensor hybrid histidine kinase [Afipia sp. 1NLS2]
 gi|298593355|gb|EFI53555.1| multi-sensor hybrid histidine kinase [Afipia sp. 1NLS2]
          Length = 745

 Score =  327 bits (839), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 91/371 (24%), Positives = 164/371 (44%), Gaps = 22/371 (5%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           +++    +  S+ E+ SD + + +    +   N       G P  +++  P+ + + +  
Sbjct: 106 ELKEAEERARSLFESQSDLVVLRDASQRLTFVNDTFCDYAGKPRAELIGTPYLLPVIEQG 165

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISE 563
                   T I     +              + ++ R  + +   +    +     D+++
Sbjct: 166 DDATESGGTRIHDQKAQTAF---------GPRWIAWRETLVRPHANEPAEFQCVGRDVTD 216

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + ++ L  A+  A   +  KS FLA  SHEIRTPL  I+G S ++ +       NP  
Sbjct: 217 RTESEHALGLARDHAVSANRAKSKFLAVASHEIRTPLNGILGMSTLLLDTPL----NPEQ 272

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
             YA  +  SG  ++ +V +LLD SKIE+GK+NL   P  L   + E   L+   A  ++
Sbjct: 273 AAYAKAVKTSGEALMSLVEELLDFSKIEAGKINLEHRPFHLAGMIEEITELLAPRAQARQ 332

Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN---EEVIL 739
           I I       +P  +  D   ++Q+ LN+ SNA+ FT  GG   ++          E+  
Sbjct: 333 IEIACYIDERLPLEVAGDAARLRQVLLNLASNAVKFTSRGG---VALIVEPGIWPNEISF 389

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            VRDTG+G+     ++  + F Q       +  G+GLGL +++ +V    G+  + S P 
Sbjct: 390 MVRDTGIGIAPDAQQRIFREFEQADEHIARQYGGSGLGLAISERIVRRMGGRIALESVPG 449

Query: 800 KGTLIEIIFPL 810
           +GT  E+  PL
Sbjct: 450 EGTTFEVSIPL 460



 Score = 44.6 bits (104), Expect = 0.064,   Method: Composition-based stats.
 Identities = 32/356 (8%), Positives = 74/356 (20%), Gaps = 22/356 (6%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           DA   L  +++      G    ++IG           +       D  +   T       
Sbjct: 129 DASQRLTFVNDTFCDYAGKPRAELIG-------TPYLLPVIEQGDDATESGGTRIHDQKA 181

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
               G       +    P  +   EF       +        +               + 
Sbjct: 182 QTAFGPRWIAWRETLVRPHANEPAEFQ-----CVGRDVTDRTESEHALGLARDHAVSANR 236

Query: 210 IKKGHSSVEKEKYD-----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
            K    +V   +       I    +      +  + ++  +      + L +    LL  
Sbjct: 237 AKSKFLAVASHEIRTPLNGILGMSTLLLDTPLNPEQAAYAKAVKTSGEALMSLVEELLDF 296

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
            +    +    H         ++    L   ++     ++      L            +
Sbjct: 297 SKIEAGKINLEHRPFHLAGMIEEITELLAPRAQARQIEIACYIDERLPLEVAGDAARLRQ 356

Query: 325 -TVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
             ++       F    G      P    +   +    +   G         ++       
Sbjct: 357 VLLNLASNAVKFTSRGGVALIVEPG---IWPNEISFMVRDTGIGIAPDAQQRIFREFEQA 413

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
              + R         A    I       +A+  +P E          Q        
Sbjct: 414 DEHIARQYGGSGLGLAISERIVRRMGGRIALESVPGEGTTFEVSIPLQASDTSAIT 469


>gi|124009209|ref|ZP_01693890.1| sensory box histidine kinase/response regulator [Microscilla marina
           ATCC 23134]
 gi|123985194|gb|EAY25128.1| sensory box histidine kinase/response regulator [Microscilla marina
           ATCC 23134]
          Length = 1055

 Score =  327 bits (839), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 100/412 (24%), Positives = 180/412 (43%), Gaps = 16/412 (3%)

Query: 413 MTFIPFEKANQFPENM-PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471
           +      +     E      G   +  + +  + + +    +L    +    GI   +  
Sbjct: 257 VWVRLVGQGEFEGEQCQRIYGTVQDINERKHQEEEAKKINTRLALATQTARVGIWEYDIV 316

Query: 472 GIILSTNRAVSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
              L+ + ++ +L+G   ED       +   L  +    +   +   +            
Sbjct: 317 SNKLTWDDSMFELYGLKYEDFDGVYSAWVGLLHPDDVQRVEEEVAWAIEGKKEFDTAFRV 376

Query: 530 LGSTKEEKLLSLRIIIKKLPFSSCYSLTMH--DISEWKQEKNKLSHAKKIAEKESSHKSD 587
           +      K +     +      S   +     DI+  K    KL  AKK A+  +  KS+
Sbjct: 377 VWQDSSVKYIKALARVHNDSQGSALFMIGTNWDITHEKLASEKLKEAKKQADTANKAKSE 436

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           FLA +SHEIRTPL  +IGF+++++  +     N    +Y + I +S   +LDI+ ++LD 
Sbjct: 437 FLANMSHEIRTPLNGVIGFADLLQRSKL----NETQQKYISTIYQSATSLLDIITNILDF 492

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQ 706
           SKIE+GK++L      L     + I+L++  A++K + +     N+IPR +  D   ++Q
Sbjct: 493 SKIEAGKLDLMVAKTDLLNLSQQIINLIRYQAHKKDLEVLLHIDNDIPRFVWIDEVKMRQ 552

Query: 707 IALNILSNAIHFTPSGGQIIISTTHT---SNEEVILR--VRDTGVGMTNYELEKAMKPFG 761
           + +N+LSNA  FT  G +I +          E V+LR  VRDTG+G+      K  + F 
Sbjct: 553 VLVNLLSNATKFTTEG-EIELKIDLQERLDEEMVVLRFAVRDTGIGIAPENKGKIFEAFS 611

Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
           Q  +S   R  GTGLGL ++  ++D    +  + S   +G++     P+  T
Sbjct: 612 QEDSSTTRRFGGTGLGLSISNKLLDLMGSRLLVESITGRGSVFYFDIPVKAT 663


>gi|75763246|ref|ZP_00743002.1| Sporulation kinase [Bacillus thuringiensis serovar israelensis ATCC
           35646]
 gi|74489267|gb|EAO52727.1| Sporulation kinase [Bacillus thuringiensis serovar israelensis ATCC
           35646]
          Length = 801

 Score =  327 bits (839), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 102/532 (19%), Positives = 210/532 (39%), Gaps = 47/532 (8%)

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVD-----KCPIPFFVYSHGNLFYANPSFLLL 351
            +  E +      +     +   + T E ++                G++  AN ++  +
Sbjct: 294 GQVIEVVGSTVDITERKKVESELSATKELLESFIKHNLDAITISDREGHILQANKAYEKI 353

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ-WNRENS 410
             + S + I            P + D    + +   +   T  +   RL T++  +  + 
Sbjct: 354 FGWSSQEIIGKRL--------PCVPDFLMEESLKNIQKILTGESVVTRLETVRQRSDGSL 405

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK-------MEIEVMQLCSILEATSD 463
           L ++       +     +  + I  +  + +  +R+       +    M+  +++E  +D
Sbjct: 406 LDVSLTVSPILDVRGNVIALSAICRDISERKQAERERHRLHQQLRDSEMKYRALIEQATD 465

Query: 464 GIAI--INREG---IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
            + +  +N +      +  N    + FGY  E++L   F+  + Q++  ++   L +I  
Sbjct: 466 AVYVVELNEDNAPSRFIEVNPVGCRRFGYSREELLSLSFSNIVPQDSQMIVR-LLEKIKK 524

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578
                TL+   +  T +       + +  L     +     DI+E  + +  L  ++K+A
Sbjct: 525 GQTSFTLQDEYVFPTGKVITAEFSVRVFNLNGKKVFLSISRDITERLKTEELLRKSEKLA 584

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
                        ++HEI  PLTA+ GF +++K+       N     Y N +      + 
Sbjct: 585 VV-----GQLATAMAHEINNPLTAMKGFMQLLKSTE-----NENNQGYINIVSSEIERIE 634

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
            I  + + ++K +  K+  +     +   + + + L+Q  A    I  R      IP I 
Sbjct: 635 SITTEFMAVAKPQVVKIQPN----DISLLMDQVLMLLQPQAMMHNIKFRIDLNPGIPLIS 690

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
            +   +KQ+ +NIL NAI   P GG+I+I      N +V +R  D G G+    +    +
Sbjct: 691 CEGNQLKQVFVNILKNAIESMPMGGEILIQINILDNNQVRIRFIDQGCGIPKERIPYLGE 750

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           PF        I+ EG GLGL +   +++ + GK +I S   KGT +E+  P+
Sbjct: 751 PFY------SIKEEGIGLGLMICYKIIETHQGKVFIESEVNKGTTVEVTLPI 796



 Score =  108 bits (269), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 44/286 (15%), Positives = 91/286 (31%), Gaps = 21/286 (7%)

Query: 313 AYFDEGENLTPETVDKCPIPFF----VYSHGNLFYANPSFLLLTKYKSVDDIEI-AGGLS 367
               + +    +TV +     F    V  H      +  F     + S   +      + 
Sbjct: 186 RELKKSKQELADTVHELQGGIFKFKKVGKHFIHTLCDGQFYYQNGFYSEQVVGKSLRTID 245

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
             +  P L          L   +   I        + W  + ++ +         +  + 
Sbjct: 246 ASIVPPHLVPQLMKY--YLQAWEGKEIIFE-----LPWPNDKTIILI--ALRPIKRNGQV 296

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
           +   G   +  + +  + ++      L S ++   D I I +REG IL  N+A  K+FG+
Sbjct: 297 IEVVGSTVDITERKKVESELSATKELLESFIKHNLDAITISDREGHILQANKAYEKIFGW 356

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
             ++I+ K     +           + +IL           T+    +  LL + + +  
Sbjct: 357 SSQEIIGKRL-PCVPDFLMEESLKNIQKIL-TGESVVTRLETVRQRSDGSLLDVSLTVSP 414

Query: 548 LPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
           +               DISE KQ + +     +   ++S  K   L
Sbjct: 415 ILDVRGNVIALSAICRDISERKQAERERHRLHQQL-RDSEMKYRAL 459



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/287 (13%), Positives = 84/287 (29%), Gaps = 25/287 (8%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG-KTT 148
           D  G++ + ++   K  G  + ++IG RL  V D L  +   +I  +L  ++     +T 
Sbjct: 338 DREGHILQANKAYEKIFGWSSQEIIGKRLPCVPDFLMEESLKNIQKILTGESVVTRLETV 397

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +G+ L V + ++  PI              I               RL ++     
Sbjct: 398 RQRSDGSLLDVSLTVS--PILDVRGNVIALS--AICRDISERKQAERERHRLHQQLRDSE 453

Query: 209 EIKKGHSSVEKEKYDIFSQQS-----------PPPHLR---MKNKVSSLTEY-YAHKDDV 253
              +       +   +                P    R    + ++ SL+      +D  
Sbjct: 454 MKYRALIEQATDAVYVVELNEDNAPSRFIEVNPVGCRRFGYSREELLSLSFSNIVPQDSQ 513

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
           +       +   ++S   Q+++        T +               +LS     +   
Sbjct: 514 MIVRLLEKIKKGQTSFTLQDEYVFPTGKVITAEFSVRVFN--LNGKKVFLSISRDITERL 571

Query: 314 YFDEGENLTP--ETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVD 358
             +E    +     V +       +   N   A   F+ L K    +
Sbjct: 572 KTEELLRKSEKLAVVGQLATA-MAHEINNPLTAMKGFMQLLKSTENE 617


>gi|170288964|ref|YP_001739202.1| PAS/PAC sensor signal transduction histidine kinase [Thermotoga sp.
           RQ2]
 gi|170176467|gb|ACB09519.1| PAS/PAC sensor signal transduction histidine kinase [Thermotoga sp.
           RQ2]
          Length = 412

 Score =  327 bits (839), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 83/413 (20%), Positives = 174/413 (42%), Gaps = 29/413 (7%)

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
             + +                  P       ++    + +    ++E+      +IL + 
Sbjct: 21  RKRLSEYRIFIEKLSDMLGEKDVPPLYLFERLKKYVDNLKETISRVEVSRDNFLTILNSL 80

Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
           S+ I I++REG I   N    +L      +   +P+    E      +N  + E +  + 
Sbjct: 81  SEPIFILDREGKITFLNEIARELVQ-GRINPEGRPYYEIFEDYY---INEMVEETIKSEE 136

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLP-FSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
            Q           E+K   +++I  +L      + +  HD+++ ++              
Sbjct: 137 PQEGTL-VTYVGNEKKYFHVKVIPVELKSGDKIFVILFHDVTKERKLDE----------- 184

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
               + +F+A VSHE+RTPLT+I G++E +               +   I+     +  +
Sbjct: 185 ---MRREFIATVSHELRTPLTSIHGYAETLLEDDL--ENKELVKRFLKIIEEESARMTRL 239

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILAD 700
           +NDLLD+ K+E  ++N   + V L E V     ++Q  A E  + +     + +  +  +
Sbjct: 240 INDLLDLEKMEESEVNFEMKDVDLCEVVEYVYKIIQPIAEENEVDLIVECEDVV--VKGN 297

Query: 701 LRSVKQIALNILSNAIHFT---PSG-GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKA 756
              + Q+ LN++ NA+ +T     G  ++ +   + + + V++ V+DTG G+      + 
Sbjct: 298 KERLIQMLLNLVDNAVKYTSLKEKGEKKVWVR-AYDTPDWVVVEVKDTGPGIPKESQSRI 356

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            + F ++  ++  +  GTGLGL + K +VD + GK  + S   +GT++ +  P
Sbjct: 357 FEKFYRVDKARSRKMGGTGLGLTIVKTIVDKHGGKIEVESEINQGTVMRVFLP 409


>gi|229058211|ref|ZP_04196599.1| hypothetical protein bcere0026_13260 [Bacillus cereus AH603]
 gi|228720075|gb|EEL71659.1| hypothetical protein bcere0026_13260 [Bacillus cereus AH603]
          Length = 591

 Score =  327 bits (839), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 84/365 (23%), Positives = 161/365 (44%), Gaps = 27/365 (7%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            ++ E  QL SIL + +DG+  +N+EG ++  N           E+       V L +  
Sbjct: 249 ALQQEKEQLASILSSMADGVITLNQEGEVVVINPPAEHFLQVWQEEK-----EVELSKKL 303

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
           PS +      ++  + +Q +E        +   + L   +            + D++E +
Sbjct: 304 PSELVELFHLVVESEQQQVVEINLQ----KGNYVVLMTPLYNQTKIRGAVAVLRDMTEER 359

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + +                + DF+A VSHE+RTP+  + G+SE I +            E
Sbjct: 360 RLE--------------KMRQDFIANVSHELRTPMVMLQGYSEAILDDIVQT--KEEINE 403

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           +   I      +  +VN+LLD++++ESG + LH   V +   V +     Q  A +K + 
Sbjct: 404 FVQIIYDESVRLGKLVNELLDLARMESGHVELHIGEVDIHPFVEKIGRKFQGIAKDKEVQ 463

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +   F + I +   D   ++Q+  N++ NAI  T +GG + +     ++  +   V+D+G
Sbjct: 464 LTVDFQSPIEQYPFDADRMEQVLTNLIDNAIRHTNAGGHVTLVINTKNSG-LTFEVQDSG 522

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGE-GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
            G+   ++      F +   ++    + GTGLGL +AK +V  + GK ++ S   +GT+ 
Sbjct: 523 AGIPEEDIPFLFDRFYKADKARTRGKKVGTGLGLAIAKNIVQGHDGKIFVSSVVGEGTIF 582

Query: 805 EIIFP 809
            +  P
Sbjct: 583 SVYLP 587


>gi|309791045|ref|ZP_07685581.1| multi-sensor signal transduction histidine kinase [Oscillochloris
           trichoides DG6]
 gi|308226900|gb|EFO80592.1| multi-sensor signal transduction histidine kinase [Oscillochloris
           trichoides DG6]
          Length = 883

 Score =  327 bits (839), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 90/376 (23%), Positives = 166/376 (44%), Gaps = 31/376 (8%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            R+ E E   L ++L +  DG+ + +R G I   N A   + G   E    +P +     
Sbjct: 539 ARQREEEASTLLAMLRSIGDGVVVSDRNGTIQIINPAAEAILGITAEAFRGRPISELPGV 598

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                     + +    +    E+       +        +I          +  HD++ 
Sbjct: 599 PAQLSAADAESRLQKFAVA---ERTVRSHYAD--------VIASNGEILGGVVVYHDMTR 647

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
                          E     K++ +A  SHE+RTP+T+I GF +++    FG +     
Sbjct: 648 --------------EEIADRLKTELMATASHELRTPMTSIRGFVDMLMLGTFGEVS-ATQ 692

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            E    I  +   ++ ++++LLD+S++E+G+  L  E + L E + + I+++     E+ 
Sbjct: 693 REPLRVIKNNVVRLVVLIDELLDMSRVEAGEARLRREELDLAEVLRDVIAVLTSQFRERE 752

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
           I +   F   +P ++AD + ++QIA+N++ NA  +TP GG + I   H  N E+ + VRD
Sbjct: 753 IELHVDFQEGLPHVVADRQRIEQIAVNLIGNACKYTPRGGTVWIGM-HNGNGELRVDVRD 811

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TGVG++         PF +  N  +    GTGLGL + + +V+ + G+ +  S    G+ 
Sbjct: 812 TGVGISEEAKSHIFTPFYRADNPLRDEVGGTGLGLSITQRLVELHGGRIWFESEVNAGST 871

Query: 804 IEIIFPLYDTSHPHDC 819
              + P+     P D 
Sbjct: 872 FSFVLPI----KPEDA 883



 Score = 38.5 bits (88), Expect = 4.5,   Method: Composition-based stats.
 Identities = 24/240 (10%), Positives = 53/240 (22%), Gaps = 19/240 (7%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D +G ++ I+      +G  A    G  + ++           +   L   +        
Sbjct: 564 DRNGTIQIINPAAEAILGITAEAFRGRPISEL---------PGVPAQLSAADAESRLQKF 614

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
                      +      + + N E  G  G  + H    +     L   L    SH   
Sbjct: 615 -----AVAERTVRSHYADVIASNGEILG--GVVVYHDMTREEIADRLKTELMATASHELR 667

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
                     +   + +        R   +V                +   +   E    
Sbjct: 668 TPMTSIRGFVDMLMLGTFGEVSATQREPLRVIKNNVVRLVVLIDELLDMSRVEAGEARLR 727

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
            E+ D   +  +         +     +           P + A     E +    +   
Sbjct: 728 REELDLAEVLRDVIA---VLTSQFREREIELHVDFQEGLPHVVADRQRIEQIAVNLIGNA 784


>gi|328466858|gb|EGF37968.1| putative histidine kinase [Lactobacillus helveticus MTCC 5463]
          Length = 619

 Score =  327 bits (839), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 85/408 (20%), Positives = 173/408 (42%), Gaps = 40/408 (9%)

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
           ++  +           ++    +   + E  +L S+L   SDG+   +R G +   N   
Sbjct: 236 DELGQLAKAFNTLSVRIEQSQEES--DSERRRLDSVLSHMSDGVLATDRHGNVSVVNHMA 293

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
                   ++I+ +P    L     S             +    E +          + L
Sbjct: 294 LSYLNADEDEIINRPIAEVLGLKDTSS---------QDLISSQKEIVVTVKPGTRDEIIL 344

Query: 542 RIIIKKLPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
                 +   + +       +HD++E ++ +              + +  F++ VSHE+R
Sbjct: 345 HASFSLIKRVTGFVSGSVCVLHDVTEQQKNE--------------NSQRQFISNVSHELR 390

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TPLT++  + E +  + +         ++     +  + ++ ++NDLL +S+++ G   +
Sbjct: 391 TPLTSLQAYIEALNEEAW--KDPEIAPKFLEVAQQETSRMIRMINDLLSLSRMDRGVSKM 448

Query: 658 HFEPVSLDEAVSEAISLV-------QLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710
             E V+L++ VS  ++         +   ++K+  I+    N    +  D   + Q+  N
Sbjct: 449 DLEFVNLNDFVSHILNRFDMIVKTDKNKGHKKKYTIKRELGNQALWVEIDTDKMMQVIDN 508

Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           I++NAI ++P GG I +  TH+    VIL + D G+G+   +L K    F ++  ++   
Sbjct: 509 IMNNAIKYSPDGGVITVRLTHS-QGHVILSISDQGLGIPRKDLGKIFDRFYRVDKARSRA 567

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
             GTGLGL +AK +V+A+ G+ +  S+  KG+   I  P Y+T    D
Sbjct: 568 QGGTGLGLAIAKEIVEAHHGRIWADSSEGKGSTFYISLP-YETMTEED 614


>gi|293553005|ref|ZP_06673650.1| sensor protein YycG [Enterococcus faecium E1039]
 gi|291602811|gb|EFF33018.1| sensor protein YycG [Enterococcus faecium E1039]
          Length = 611

 Score =  327 bits (839), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 86/418 (20%), Positives = 175/418 (41%), Gaps = 31/418 (7%)

Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR-KMEIEVMQL 454
              R   I+  R       +    K +   E         +  +     +  ME E  +L
Sbjct: 209 GEMREQAIRIARG-----DYSRKVKVHGQDELGQLADTFNQLAERIEEAQDTMEAERNRL 263

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
            S+L   +DG+   +R G +++ N     L     E+ + +     L+          L 
Sbjct: 264 DSVLSHMTDGVIATDRRGKVVTINDMAVSLLDIKNEEAIGQSILTLLDIEEEYT----LR 319

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLS 572
           ++L       L++ T     ++ +L +   + +      S     +HD++E ++ + +  
Sbjct: 320 KLLEDPNEMVLDRSTSTLESDQMILRVDFSMIRRESGFISGLVAVLHDVTEQEKTERE-- 377

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
                       + +F++ VSHE+RTPLT++  + E +    +          +      
Sbjct: 378 ------------RREFVSNVSHELRTPLTSMRSYIEALSEGAW--KDEEVAPNFLKVTLD 423

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA--NEKRILIRTSF 690
             + ++ ++NDLL++S++++G   L  E V+ +E V+  +    +     EK   IR  F
Sbjct: 424 ETDRMIRMINDLLNLSRMDTGNTQLQLEYVNFNELVNFVLDRFDMMVGNQEKNYKIRREF 483

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
                 +  D   + Q+  NI++NAI ++P GG I       ++  VIL + D G+G+  
Sbjct: 484 TQRDLWVEVDTDKIIQVVDNIMNNAIKYSPDGGTITCRL-LETHNNVILSITDQGLGIPK 542

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            +L +  + F ++  ++     GTGLGL +++ ++ A+ G  +  S   KG+   I  
Sbjct: 543 KDLNRVFERFYRVDKARARAQGGTGLGLAISREVIKAHRGAIWAESKEGKGSTFYISL 600


>gi|262166423|ref|ZP_06034160.1| aerobic respiration control sensor protein ArcB [Vibrio mimicus
           VM223]
 gi|262026139|gb|EEY44807.1| aerobic respiration control sensor protein ArcB [Vibrio mimicus
           VM223]
          Length = 785

 Score =  327 bits (839), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 85/400 (21%), Positives = 166/400 (41%), Gaps = 19/400 (4%)

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
               +         +E E       + ++      L S ++A+ D I   N +G     N
Sbjct: 122 RIKAEEAREEAMLDLENEVYQREKTQLELAERTALLRSFIDASPDLIYYRNAKGEFSGCN 181

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
           RA+ +L G    +++         +     +     ++ + +   T E+        +  
Sbjct: 182 RAMEELTGKRESELVGLTPWDVYRKEIAQSIVETDQQVFNHNTAITYEQWLEYPDGRKSF 241

Query: 539 LSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
             LR +                 DI+E K+ +  L       EK S  K+ F++ +SHE+
Sbjct: 242 FELRKVPFYSKDGRHLGLVGFGRDITERKRHEESL-------EKASRDKTTFISTISHEL 294

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTPL  I+G S ++ +            ++   I+ S   + +I ND++D+ K +  K+ 
Sbjct: 295 RTPLNGIVGLSRMLLDTPLSS----EQRKHLQTINVSAVTLGNIFNDIIDMDKFDRRKLE 350

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNA 715
           L    ++ +E V+E   L  L A +K +        ++P  +  D   ++Q+  N++SNA
Sbjct: 351 LFPAALNFEEFVAEIEVLAALMAEQKGLRFDLERLTDLPSLVEVDATRLRQVLWNLISNA 410

Query: 716 IHFTPSGGQI-IISTTH-TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGE 772
           + FT  GG +  +S      + ++ + V DTG+G+   E EK    + Q+ + +      
Sbjct: 411 MKFTKEGGVVMTVSAECDEQHADITIEVEDTGIGIPEEEQEKIFAMYYQVKSGKDNLHAV 470

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF--PL 810
           GTG+GL +++ ++    G   + S    G+   +    PL
Sbjct: 471 GTGIGLAVSRQLIKLMGGDISVNSEEGFGSTFTVTIRVPL 510



 Score = 47.7 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 42/311 (13%), Positives = 81/311 (26%), Gaps = 21/311 (6%)

Query: 19  KGNTQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVS---NTNYLDSENTFV 75
           +   Q+L++K   N  +  +  +E    +   +    D   E          L      +
Sbjct: 98  RSRDQELNQKLQQNIVKLNQEIEERIKAEEAREEAMLDLENEVYQREKTQLELAERTALL 157

Query: 76  FDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD 135
              I  +    +  +A G     +  + +  G    +++G+   DV              
Sbjct: 158 RSFIDASPDLIYYRNAKGEFSGCNRAMEELTGKRESELVGLTPWDVYRKEIAQSIVETDQ 217

Query: 136 LLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA 195
            +   NT       W           +L  +P YS++    G  GFG             
Sbjct: 218 QVFNHNTAITYE-QWLEYPDGRKSFFELRKVPFYSKDGRHLGLVGFG--RDITERKRHEE 274

Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY-------- 247
             ++  +  +                    S+      L  + +    T           
Sbjct: 275 SLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDTPLSSEQRKHLQTINVSAVTLGNI 334

Query: 248 ------AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301
                   K D  K E +P   + E  + E E    +   Q   +     L +      E
Sbjct: 335 FNDIIDMDKFDRRKLELFPAALNFEEFVAEIEVLAALMAEQKGLRFDLERLTDL-PSLVE 393

Query: 302 YLSHRNHPSLS 312
             + R    L 
Sbjct: 394 VDATRLRQVLW 404


>gi|330897590|gb|EGH29009.1| PAS protein [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 761

 Score =  327 bits (839), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 113/426 (26%), Positives = 200/426 (46%), Gaps = 18/426 (4%)

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
           AR+H +Q N +       +  +   +         +          +R +     +L  I
Sbjct: 197 ARVHQVQRNAQRLALGHPLLPQPPEKDEIGQLGTRLVEAGQLLAERERALRDNEERLRLI 256

Query: 458 LEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           +E   D GI  ++R G I + N    ++ GY  ++I+ + F+VF  Q            +
Sbjct: 257 IEGVKDYGIFALDRNGYITTWNAGAERIKGYTEQEIIGQHFSVFYLQQECPQHPDM--AL 314

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNKLS 572
               +     +      K+       ++I     S      +S    DIS+ +  +  L 
Sbjct: 315 HEATVNGRYTEEGWRQRKDGSRFWASVVITAQYDSNDELRGFSKITRDISDRRVAEIALG 374

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
            A++ AE+ S  KS+FL+R+SHE+RTPL +I+GF++++                  +I R
Sbjct: 375 TAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLL-----DMDSPASQRPQIGHILR 429

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR--TSF 690
           +G  +L ++N++LDI++IE+G ++L  EPVSL   + EA+ LV   A +  I ++   + 
Sbjct: 430 AGQHLLKLINEVLDIARIEAGHVSLILEPVSLSSVLEEALVLVSPMAADANIELKPLPNL 489

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
            + I  ++AD + + Q+ LN+LSNAI +    GQ+ I    T+  +V + V DTG G+  
Sbjct: 490 PDEIG-VVADRQRLIQVLLNLLSNAIKYNRPAGQVRIEIEQTAE-QVTVSVVDTGYGIAP 547

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             + +  KPF ++        EGTGLGL L+K+M++   G   + +TP +G    +  P 
Sbjct: 548 ERIGQLFKPFERLDA--NPSVEGTGLGLALSKSMLEMMHGTLSVQNTPDEGCRFILALPF 605

Query: 811 YDTSHP 816
                P
Sbjct: 606 VRVQPP 611



 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/259 (9%), Positives = 69/259 (26%), Gaps = 20/259 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH--IDPNNHIGDLLKRQNTW 143
            + +D +GY+   +    +  G    ++IG               P+  + +       +
Sbjct: 265 IFALDRNGYITTWNAGAERIKGYTEQEIIGQHFSVFYLQQECPQHPDMALHEATVNGR-Y 323

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGF---------RGFGIVHVNRVDNDPR 194
             +      +G+  +  + + A   Y  N E  GF         R    + +     +  
Sbjct: 324 TEEGWRQRKDGSRFWASVVITAQ--YDSNDELRGFSKITRDISDRRVAEIALGTAREEAE 381

Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254
              +   +  S +    +   +       +    SP         +    ++     + +
Sbjct: 382 RASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSPASQRPQIGHILRAGQHLLKLINEV 441

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
                 L  +   +         ++L+   ++         +  + E     N P     
Sbjct: 442 ------LDIARIEAGHVSLILEPVSLSSVLEEALVLVSPMAADANIELKPLPNLPDEIGV 495

Query: 315 FDEGENLTPETVDKCPIPF 333
             + + L    ++      
Sbjct: 496 VADRQRLIQVLLNLLSNAI 514


>gi|308126506|ref|ZP_05910586.2| PAS domain protein [Vibrio parahaemolyticus AQ4037]
 gi|308108483|gb|EFO46023.1| PAS domain protein [Vibrio parahaemolyticus AQ4037]
          Length = 780

 Score =  327 bits (839), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 89/406 (21%), Positives = 174/406 (42%), Gaps = 19/406 (4%)

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
               +         +E E       + ++      L S ++A+ D I   N +G+    N
Sbjct: 119 RIKAEEAREEAMQDLENEVFQRERTQLELAERTALLRSFIDASPDLIYYRNADGVFSGCN 178

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
           RA+ +L G     ++         +     +     ++ S +   T E+        +  
Sbjct: 179 RAMEELTGKKEHQLVGLSPWDVYSKEIAQPIVDTDQKVFSDNQAITYEQWLEYPDGRKHY 238

Query: 539 LSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
             LR +                 DI+E K+ +  L       EK S  K+ F++ +SHE+
Sbjct: 239 FELRKVPFYSKDGRHLGLVGFGRDITERKRHEESL-------EKASRDKTTFISTISHEL 291

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTPL  I+G S ++ +            ++   I+ S   + +I ND++D+ K +  K+ 
Sbjct: 292 RTPLNGIVGLSRMLLDSPL----TEEQRKHMQTINVSAITLGNIFNDIIDMDKFDRRKLE 347

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNA 715
           L   P++ ++ V+E  S+  L A +K +       +++P+ I  D   ++Q+  N++SNA
Sbjct: 348 LLPAPLNFEDFVAEIESISALMAEQKGLRFDLERLSDLPKAIEVDATRLRQVIWNLVSNA 407

Query: 716 IHFTPSGGQI-IISTTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGE 772
           + FT  GG +  +S     +   +I+ V DTG+G+   EL+K    + Q+ + +      
Sbjct: 408 MKFTKEGGVVMTVSADVEEDFATIIMEVEDTGIGIPEAELDKIFAMYYQVKSGKDNLHAV 467

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF--PLYDTSHP 816
           GTG+GL ++K +++   G   + S    G+   +    P+ +   P
Sbjct: 468 GTGIGLAVSKQLINMMDGDITVTSEEGFGSTFTVSIHVPIVELEEP 513



 Score = 48.5 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/185 (11%), Positives = 48/185 (25%), Gaps = 6/185 (3%)

Query: 34  FETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHG 93
            E E+  K     +   Q    +  Q   +     +                 +  +A G
Sbjct: 114 LEIEERIKAEEAREEAMQDLENEVFQRERTQLELAERTALLRSFIDASPDLIYYR-NADG 172

Query: 94  YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPI 152
                +  + +  G    +++G+   DV       P  +    +         +  L   
Sbjct: 173 VFSGCNRAMEELTGKKEHQLVGLSPWDVYSKEIAQPIVDTDQKVFSDNQAITYEQWLEYP 232

Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212
           +G       +L  +P YS++    G  GFG               ++  +  +       
Sbjct: 233 DGR--KHYFELRKVPFYSKDGRHLGLVGFG--RDITERKRHEESLEKASRDKTTFISTIS 288

Query: 213 GHSSV 217
                
Sbjct: 289 HELRT 293


>gi|296329975|ref|ZP_06872459.1| two-component sensor histidine kinase (YycF) [Bacillus subtilis
           subsp. spizizenii ATCC 6633]
 gi|305676700|ref|YP_003868372.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296153014|gb|EFG93879.1| two-component sensor histidine kinase (YycF) [Bacillus subtilis
           subsp. spizizenii ATCC 6633]
 gi|305414944|gb|ADM40063.1| two-component sensor histidine kinase (paired with YycF) [Bacillus
           subtilis subsp. spizizenii str. W23]
          Length = 611

 Score =  327 bits (839), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 83/374 (22%), Positives = 156/374 (41%), Gaps = 23/374 (6%)

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             +    +   E E  +L S++   +DG+   NR G I+  N    +L     E  L  P
Sbjct: 248 TRELEDAQAMTEGERRKLASVIAYMTDGVIATNRNGAIILLNSPALELLNVSRETALEMP 307

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556
            T  L           + +  S+ L    +            ++  +I ++         
Sbjct: 308 ITSLLGIQENYTFEDLVEQQDSMLLEIERDDELTVLR-----VNFSVIQREHGKIDGLIA 362

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            ++D++E ++   +              + +F+A VSHE+RTPLT +  + E +    + 
Sbjct: 363 VIYDVTEQEKMDQE--------------RREFVANVSHELRTPLTTMRSYLEALAEGAW- 407

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
                    +          ++ +VNDLL +SK +S     + E + +   +S  I   +
Sbjct: 408 -ENKDIAPRFLMVTQNETERMIRLVNDLLQLSKFDSKDYQFNREWIQIVRFMSLIIDRFE 466

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
               E+ +    +  +    +  D   + Q+  NI+SNA+ ++P GG +  S      EE
Sbjct: 467 -MTKEQHVEFIRNLPDRNLYVEIDQDKITQVLDNIISNALKYSPEGGHVTFSIDVNEEEE 525

Query: 737 VI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
           ++ + V+D G+G+   ++EK    F ++  ++  +  GTGLGL +A+ MV A+ G  +  
Sbjct: 526 LLYISVKDEGIGIPKKDVEKVFDRFYRVDKARTRKLGGTGLGLAIAREMVQAHGGDIWAD 585

Query: 796 STPAKGTLIEIIFP 809
           S   KGT I    P
Sbjct: 586 SIEGKGTTITFTLP 599


>gi|262170675|ref|ZP_06038353.1| aerobic respiration control sensor protein ArcB [Vibrio mimicus
           MB-451]
 gi|261891751|gb|EEY37737.1| aerobic respiration control sensor protein ArcB [Vibrio mimicus
           MB-451]
          Length = 785

 Score =  327 bits (839), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 85/400 (21%), Positives = 165/400 (41%), Gaps = 19/400 (4%)

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
               +         +E E       + ++      L S ++A+ D I   N +G     N
Sbjct: 122 RIKAEEAREEAMLDLENEVYQREKTQLELAERTALLRSFIDASPDLIYYRNAKGEFSGCN 181

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
           RA+ +L G    +++         +     +     ++ + +   T E+        +  
Sbjct: 182 RAMEELTGKRESELVGLTPWDVYRKEIAQSIVETDQQVFNHNTAITYEQWLEYPDGRKSF 241

Query: 539 LSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
             LR +                 DI+E K+ +  L       EK S  K+ F++ +SHE+
Sbjct: 242 FELRKVPFYSKDGRHLGLVGFGRDITERKRHEESL-------EKASRDKTTFISTISHEL 294

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTPL  I+G S ++ +            ++   I+ S   + +I ND++D+ K +  K+ 
Sbjct: 295 RTPLNGIVGLSRMLLDTPLSS----EQRKHLQTINVSAVTLGNIFNDIIDMDKFDRRKLE 350

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNA 715
           L    ++ +E V+E   L  L A +K +        ++P  +  D   ++Q+  N++SNA
Sbjct: 351 LFPAALNFEEFVAEIEVLAALMAEQKGLRFDLERLTDLPSLVEVDATRLRQVLWNLISNA 410

Query: 716 IHFTPSGGQI-IISTTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGE 772
           + FT  GG +  +S        ++ + V DTG+G+   E EK    + Q+ + +      
Sbjct: 411 MKFTKEGGVVMTVSAECDEQYADITIEVEDTGIGIPEEEQEKIFAMYYQVKSGKDNLHAV 470

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF--PL 810
           GTG+GL +++ ++    G   + S    G+   +    PL
Sbjct: 471 GTGIGLAVSRQLIKLMGGDISVNSEEGFGSTFTVTIRVPL 510



 Score = 47.7 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 42/311 (13%), Positives = 81/311 (26%), Gaps = 21/311 (6%)

Query: 19  KGNTQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVS---NTNYLDSENTFV 75
           +   Q+L++K   N  +  +  +E    +   +    D   E          L      +
Sbjct: 98  RSRDQELNQKLQQNIVKLNQEIEERIKAEEAREEAMLDLENEVYQREKTQLELAERTALL 157

Query: 76  FDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD 135
              I  +    +  +A G     +  + +  G    +++G+   DV              
Sbjct: 158 RSFIDASPDLIYYRNAKGEFSGCNRAMEELTGKRESELVGLTPWDVYRKEIAQSIVETDQ 217

Query: 136 LLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA 195
            +   NT       W           +L  +P YS++    G  GFG             
Sbjct: 218 QVFNHNTAITYE-QWLEYPDGRKSFFELRKVPFYSKDGRHLGLVGFG--RDITERKRHEE 274

Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY-------- 247
             ++  +  +                    S+      L  + +    T           
Sbjct: 275 SLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDTPLSSEQRKHLQTINVSAVTLGNI 334

Query: 248 ------AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301
                   K D  K E +P   + E  + E E    +   Q   +     L +      E
Sbjct: 335 FNDIIDMDKFDRRKLELFPAALNFEEFVAEIEVLAALMAEQKGLRFDLERLTDL-PSLVE 393

Query: 302 YLSHRNHPSLS 312
             + R    L 
Sbjct: 394 VDATRLRQVLW 404


>gi|46202456|ref|ZP_00053185.2| COG0642: Signal transduction histidine kinase [Magnetospirillum
            magnetotacticum MS-1]
          Length = 1136

 Score =  327 bits (839), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 115/560 (20%), Positives = 236/560 (42%), Gaps = 29/560 (5%)

Query: 281  NQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY---FDEGENLTPETVDKCPIPFFVYS 337
                 +     + ++ +     L HR+  + +       +      + + +  +      
Sbjct: 581  QGRPNQNLGKLIADDFRIDLRALVHRSRETSTVAMGSKRQLRTREGDVMSRLVVRPLHVE 640

Query: 338  HGNLFYANPSFLLLTKYKSVDDIEI--AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIA 395
             G       S   +        +E   + G    L   +       + +     +     
Sbjct: 641  SGRELLFLVSCEKIELISEGGAVEATTSPGNEIRLIELEQELTATREHLQTVVEELETSN 700

Query: 396  ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
               +    +    N    +     + +          +   + + ++   ++      L 
Sbjct: 701  EELQALNEEMQAANEELQSSNEELETSNEELQSTNEELTTVNEELQVRTSELAAANADLQ 760

Query: 456  SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
            +I +     + ++++   I       ++LFG    D   +  T    Q     + + L  
Sbjct: 761  NIQDNVGFPMLVVDKGLRITRFTPQAARLFGLLPSDA-GQLITAVPSQFHVKDLRNLLVT 819

Query: 516  ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL--PFSSCYSLTMHDISEWKQEKN---- 569
            ++S  L     +  +    E ++  + I   +     ++   LT  D ++ +  +     
Sbjct: 820  VVSSGLS---HEEII--DAEGRIYRMGIFPYRDLREQTAGAILTFIDETDLRNTQKDLEA 874

Query: 570  ----------KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
                      +L  AK IAE  +  KS+FLA +SHE+RTPL A++GF++++ ++ +G LG
Sbjct: 875  SIDSLRSTQGELKEAKNIAESANRAKSEFLANMSHELRTPLNAVLGFAQIMADEMWGSLG 934

Query: 620  NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
            N RY EY   I  SG  +L ++  +LD+S IE+G+  L    V++ + +  ++ L+   A
Sbjct: 935  NDRYKEYIGIIVNSGQHLLALIGQVLDMSVIEAGRTTLRESNVNISDVIVTSMRLLSSQA 994

Query: 680  NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
                I +  S  +++P +  DL ++++I LN+L NA+ FTP+GG + ++ +H  +  V +
Sbjct: 995  ENSEINLTASVPDDLPHMRGDLTAIQRILLNLLGNALKFTPAGGAVTLTASHDQSG-VTI 1053

Query: 740  RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG-EGTGLGLPLAKAMVDANMGKFYIFSTP 798
             VRDTG+G++ ++L++ + PF Q       +  EG GLGLP+ K++++ + G   I S  
Sbjct: 1054 CVRDTGIGISAHDLDRVLMPFEQGGQRILRKEREGVGLGLPITKSLMELHGGTLSIDSKE 1113

Query: 799  AKGTLIEIIFPLYDTSHPHD 818
             KGT   + FP   +   HD
Sbjct: 1114 GKGTTACVHFPASRSLAAHD 1133


>gi|311030764|ref|ZP_07708854.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus sp.
           m3-13]
          Length = 594

 Score =  327 bits (839), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 88/364 (24%), Positives = 164/364 (45%), Gaps = 27/364 (7%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            +  E   L +IL + +DG+  +NR+G IL TN    K                   ++ 
Sbjct: 249 ALNQEKEHLANILSSMADGVITLNRDGTILVTNPPAEKFLQAWYYQEGNAS-----GEDL 303

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
           P  +       +S++  Q++E    G T     + +   +            + D++E +
Sbjct: 304 PGEVVEMFQRAVSVEKEQSIELTYQGRT----WVIVMSPLYTQTHIRGAVAVIRDMTEER 359

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           +                  + DF+A VSHE+RTP++ + G+SE I +   G   +    E
Sbjct: 360 RL--------------DKLRKDFIANVSHELRTPISMLQGYSEAIVDDIAGT--DEEKKE 403

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
            A+ I      +  +VNDLLD++++E+G ++L++E  ++   V +     Q  A EK I+
Sbjct: 404 LASVIYDESLRMGRLVNDLLDLARMEAGHISLNYENANIVAFVEKITRKFQGLAKEKSIV 463

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +++    +   I  D+  ++Q+  N++ NAI  T   G I I     +N  V + V+D+G
Sbjct: 464 LQSRVEGD-GVIQMDVDRMEQVMTNLVDNAIRHTADDGTITIHAKLINNG-VKIDVKDSG 521

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
            G+   +L    + F +   ++     GTGLGL + K +++A+ G   + S   +GT   
Sbjct: 522 HGIPEEDLPFVFERFYKADKARTRGRAGTGLGLAIVKNIIEAHRGTISVHSKENEGTTFS 581

Query: 806 IIFP 809
           +  P
Sbjct: 582 MYIP 585


>gi|220923544|ref|YP_002498846.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans
           ORS 2060]
 gi|219948151|gb|ACL58543.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans
           ORS 2060]
          Length = 944

 Score =  327 bits (839), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 87/764 (11%), Positives = 211/764 (27%), Gaps = 64/764 (8%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY-GKTT 148
               +    ++   + +G+     +G R  DV   +  D    IG  L  Q TW      
Sbjct: 68  GPDLHFLY-NDAYAEILGDKHPSALGRRFRDVWPEIWGDVEPLIGAALAGQATWAENMPL 126

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                G +       +  P+   +    G   F                +  + +     
Sbjct: 127 TMNRRGHDEQTWFTFSYSPLRDEDGAVVGM--FCACTETTGRVVAEEALREAEARLRLAT 184

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPH-----LRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
           E  +          +     +           +   ++         D    T  +    
Sbjct: 185 EAAEVGLWDVDLVRETLYWPARVKAMFGISPDVPVTIADFYAGLHPDDRERVTRAFAAAL 244

Query: 264 SEESSLPEQEDFHTI---NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
                +    ++ TI   +            + ++       +      +     +E   
Sbjct: 245 DPARRVVYDVEYRTIGKEDGVLRWVAAKGRGVFDDEGRCVRVVGTAIDVTARKRIEESLR 304

Query: 321 LTPETVDKC----PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
            +           P   +  +       +   +     +  D++  A  L  +    +  
Sbjct: 305 ASEAQFRALSQSIPNIVWAATPDGTVDWSNDQVQTYSGRPADELNGAAWLDIVHPDDRGR 364

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
              + +  +  R         A    ++    +            +     +   G + +
Sbjct: 365 MIASWQEALRTRQ-----PYQAE-FRLRSAAGSYRWFLTRVRPIRDAEGVLIRWVGTDTD 418

Query: 437 DVDTRIN-----------KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
             D +             + ++     +   +   + D +A++  +GI  + N A   + 
Sbjct: 419 IDDQKRAMADLVRFNEALEARVAERTAERDRVWRNSRDLLAVVGADGIFRAVNPAWQSIL 478

Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
           G+   +++ + F  F+      +    L    + DL    +       ++     +    
Sbjct: 479 GHDPLEVVGRSFREFIWPEDADLTQQGLDAASARDLT---DFENRYRHQDGTPRWISWRT 535

Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES--SHKSDFLARVSHEIRTPLTAI 603
                         D++  K++   L+ A++   +             V+H+    LT I
Sbjct: 536 SV--EGDLVYAYGRDVTAEKEQARALAQAEEALRQSQKLEAVGQLTGGVAHDFNNLLTII 593

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
               + ++      L   R   Y + +  + +    +   LL  ++ ++    L  E + 
Sbjct: 594 RSSVDFLRR---PDLPEERRRRYLDAVSDTVDRAAKLTGQLLAFARRQA----LKPEVID 646

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
           +   +     ++       RI + T   +    +  DL   +   +N+  NA       G
Sbjct: 647 VSARLQAVAEMLDA-VTGARIRVVTQVPDRPCFVRTDLSQFETALVNMAVNARDAMNGEG 705

Query: 724 QIIISTTH------------TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
            + +                       + + DTG G+    + +  +PF          G
Sbjct: 706 TLTLRLACGCALPAIRGHAGAPGPFAAVSLTDTGAGIPPDLIGRIFEPFFTTK----EVG 761

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            GTGLGL         + G   + ST  +GT+  +  P  +T  
Sbjct: 762 RGTGLGLSQVFGFAKQSGGDIDVHSTVGQGTIFTLYLPEVETDQ 805



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/376 (11%), Positives = 92/376 (24%), Gaps = 30/376 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG---DLLKRQNT 142
            W     G +   ++++    G  A ++ G    D+      D    I    + L+ +  
Sbjct: 321 VWAATPDGTVDWSNDQVQTYSGRPADELNGAAWLDIVHPD--DRGRMIASWQEALRTRQP 378

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA-LGKRLD 201
           +  +  L    G+  Y        PI          R  G            A L +  +
Sbjct: 379 YQAEFRLRSAAGS--YRWFLTRVRPIRDAEGVLI--RWVGTDTDIDDQKRAMADLVRFNE 434

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS--------------SLTEYY 247
              + + E       V +   D+ +        R  N                 S  E+ 
Sbjct: 435 ALEARVAERTAERDRVWRNSRDLLAVVGADGIFRAVNPAWQSILGHDPLEVVGRSFREFI 494

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
             +D  L  +      S       +  +   +              +        ++   
Sbjct: 495 WPEDADLTQQGL-DAASARDLTDFENRYRHQDGTPRWISWRTSVEGDLVYAYGRDVTAEK 553

Query: 308 HPSLSAYFDEGENLTPETVDKCP--IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365
             + +    E      + ++          +   NL     S +   +   + +      
Sbjct: 554 EQARALAQAEEALRQSQKLEAVGQLTGGVAHDFNNLLTIIRSSVDFLRRPDLPEERRRRY 613

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSD---RTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
           L  + D    +     + +   R        I  SARL  +    +           +  
Sbjct: 614 LDAVSDTVDRAAKLTGQLLAFARRQALKPEVIDVSARLQAVAEMLDAVTGARIRVVTQVP 673

Query: 423 QFPENMPQNGIEPEDV 438
             P  +  +  + E  
Sbjct: 674 DRPCFVRTDLSQFETA 689


>gi|298242060|ref|ZP_06965867.1| multi-sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297555114|gb|EFH88978.1| multi-sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 796

 Score =  327 bits (839), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 117/779 (15%), Positives = 255/779 (32%), Gaps = 91/779 (11%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL-HIDPNNHIGDLLKRQNTWYGKTTLW 150
            G +   +       G    + IG  +  +     H +    +  L + +   + +T   
Sbjct: 30  EGIITSWNPAAVSLFGYTPQEAIGQSVLLIIPEELHAEEKEILATLRQGKRIEHFETVRQ 89

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH---- 206
             +GT   + + L+  P+  RN    G     I                L          
Sbjct: 90  RKDGT--RIEVSLSISPVKDRNGTIVGATK--IARDVSERRQAERAHLHLAALVESADTP 145

Query: 207 -LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
            + +  +G  +            S    +        +T  +              +   
Sbjct: 146 IIGKTSEGIITSWNRAAQHLYGYSAQEAVGQP-----ITLIFPVDRQDEFITIMERIRQG 200

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
           E     +      +  +         + +++          +  +     +  E +  + 
Sbjct: 201 ERVELYETVRQRKDGTRVPVSVAVSPIYDHAGLLIGASDIAHDITERKRIEAQEQMLAQL 260

Query: 326 ----------------VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
                           V    +P  +     +   N +  L     +  D E      TL
Sbjct: 261 SQVLASTLDYQETLTAVAHLAVP-RIADWCTIELVNAAGHLELAELAHIDPEQVRWARTL 319

Query: 370 LDA-PKLSDNNAIKPVMLYRSDRTCIA-------ASARLHTIQWNRENSLAMTFIPFEKA 421
            +  P   D       +L                  A  +  +      +  T       
Sbjct: 320 CERFPADPDAQRGVAQVLRSGHAELYPEITDDLLVEASRNEEELALARQIGFTSAMLVPL 379

Query: 422 NQFPENMPQNGIEPEDVDTRINK-----------------------RKMEIEVMQLCSIL 458
               +      +         N                        R+++    Q   IL
Sbjct: 380 TARGKITGVLSLATTASGRHYNAFDLALAEEVGRRIGLALENARLYREVQQSRDQFDIIL 439

Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYP-VEDILRKPFTVFL---EQNTPSVMNHYLT 514
           +  +DGI +      +L  N   +++ G     ++L +P  + L              L 
Sbjct: 440 QGVADGIIVYTPNNRVLYANEVAAQMSGVTLFHELLDQPDEILLTTSPLIDEQGHALSLE 499

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNK 570
            +    +    ++       +     ++II + +   S          HDI+E  + +++
Sbjct: 500 ALPHCRVLAGAQEAQATLRVQGTERWVQIISRPVRTQSGAVAMVISIWHDITERMRVEHR 559

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
                         K +F++  SHE++TP+T++ GF+ V++  R     + + + Y   +
Sbjct: 560 --------------KDEFISMASHELKTPVTSLKGFTHVLQR-RLTKREDEQGLSYLARM 604

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
           D   + +  +++DLLDIS++++GK+ L  E   LDE ++E +  VQ      ++ I    
Sbjct: 605 DAQLDKLTRLISDLLDISRMQAGKLALRIEAFELDELLNEIVDNVQATTTSHQLRIE--- 661

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
            +   +++ D   + Q+ +N+L+NAI ++P    III       ++VI+ V+D G+G+  
Sbjct: 662 GHTGAQVIGDPDRLGQVFINLLTNAIKYSPEAEHIIIH-RFHEGKQVIISVQDFGIGIDQ 720

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
              ++  + F Q+   ++    G G+GL LA+ +V  + G+ ++ S    G+   +  P
Sbjct: 721 SHHDRIFERFYQV-GPEEKTYPGLGIGLYLAREIVSRHKGRIWVESRKGAGSAFFVALP 778



 Score =  125 bits (313), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 54/389 (13%), Positives = 124/389 (31%), Gaps = 36/389 (9%)

Query: 317 EGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
           E   +    +             G +   NP+ + L  Y   + I      S LL  P+ 
Sbjct: 8   EELGIYEAIIASSDDAIVSKTLEGIITSWNPAAVSLFGYTPQEAIGQ----SVLLIIPEE 63

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
                 + +   R  +                   + ++       ++    +    I  
Sbjct: 64  LHAEEKEILATLRQGKRIEHFETVRQR---KDGTRIEVSLSISPVKDRNGTIVGATKIAR 120

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
           +  + R  +R      + L +++E+    I     EGII S NRA   L+GY  ++ + +
Sbjct: 121 DVSERRQAERA----HLHLAALVESADTPIIGKTSEGIITSWNRAAQHLYGYSAQEAVGQ 176

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555
           P T+    +        +  I   +  +     T+   K+   + + + +  +   +   
Sbjct: 177 PITLIFPVDRQDEFITIMERIRQGERVELY--ETVRQRKDGTRVPVSVAVSPIYDHAGLL 234

Query: 556 L----TMHDISEWKQEK--NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
           +      HDI+E K+ +   ++          +    + L  V+H       A+   ++ 
Sbjct: 235 IGASDIAHDITERKRIEAQEQMLAQLSQVLASTLDYQETLTAVAH------LAVPRIADW 288

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL-------LDISK-IESGKMNLHFEP 661
              +     G+    E A+           +             +++ + SG   L+ E 
Sbjct: 289 CTIELVNAAGHLELAELAHIDPEQVRWARTLCERFPADPDAQRGVAQVLRSGHAELYPEI 348

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSF 690
               + + EA    +  A  ++I   ++ 
Sbjct: 349 TD--DLLVEASRNEEELALARQIGFTSAM 375


>gi|257899653|ref|ZP_05679306.1| histidine kinase [Enterococcus faecium Com15]
 gi|293570842|ref|ZP_06681889.1| sensor protein YycG [Enterococcus faecium E980]
 gi|257837565|gb|EEV62639.1| histidine kinase [Enterococcus faecium Com15]
 gi|291609110|gb|EFF38385.1| sensor protein YycG [Enterococcus faecium E980]
          Length = 611

 Score =  327 bits (839), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 86/418 (20%), Positives = 175/418 (41%), Gaps = 31/418 (7%)

Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR-KMEIEVMQL 454
              R   I+  R       +    K +   E         +  +     +  ME E  +L
Sbjct: 209 GEMREQAIRIARG-----DYSRKVKVHGQDELGQLADTFNQLAERIEEAQDTMEAERNRL 263

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
            S+L   +DG+   +R G +++ N     L     E+ + +     L+          L 
Sbjct: 264 DSVLSHMTDGVIATDRRGKVITINDMAVSLLDVKNEEAIGQSILTLLDIEEEYT----LR 319

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLS 572
           ++L       L++ T     ++ +L +   + +      S     +HD++E ++ + +  
Sbjct: 320 KLLEDPNEMVLDRSTSTLESDQMILRVDFSMIRRESGFISGLVAVLHDVTEQEKTERE-- 377

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
                       + +F++ VSHE+RTPLT++  + E +    +          +      
Sbjct: 378 ------------RREFVSNVSHELRTPLTSMRSYIEALSEGAW--KDEEVAPNFLKVTLD 423

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA--NEKRILIRTSF 690
             + ++ ++NDLL++S++++G   L  E V+ +E V+  +    +     EK   IR  F
Sbjct: 424 ETDRMIRMINDLLNLSRMDTGNTQLQLEYVNFNELVNFVLDRFDMMVGNQEKNYKIRREF 483

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
                 +  D   + Q+  NI++NAI ++P GG I       ++  VIL + D G+G+  
Sbjct: 484 TQRDLWVEVDTDKIIQVVDNIMNNAIKYSPDGGTITCRL-LETHNNVILSITDQGLGIPK 542

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            +L +  + F ++  ++     GTGLGL +++ ++ A+ G  +  S   KG+   I  
Sbjct: 543 KDLNRVFERFYRVDKARARAQGGTGLGLAISREVIKAHRGAIWAESKEGKGSTFYISL 600


>gi|257882230|ref|ZP_05661883.1| histidine kinase [Enterococcus faecium 1,231,502]
 gi|261208377|ref|ZP_05923027.1| hypothetical protein EFZG_02419 [Enterococcus faecium TC 6]
 gi|289566830|ref|ZP_06447240.1| PAS/PAC sensor signal transduction histidine kinase [Enterococcus
           faecium D344SRF]
 gi|293567712|ref|ZP_06679055.1| sensor protein YycG [Enterococcus faecium E1071]
 gi|294616678|ref|ZP_06696448.1| sensor protein YycG [Enterococcus faecium E1636]
 gi|294619189|ref|ZP_06698675.1| sensor protein YycG [Enterococcus faecium E1679]
 gi|294623109|ref|ZP_06701995.1| sensor protein YycG [Enterococcus faecium U0317]
 gi|257817888|gb|EEV45216.1| histidine kinase [Enterococcus faecium 1,231,502]
 gi|260077438|gb|EEW65157.1| hypothetical protein EFZG_02419 [Enterococcus faecium TC 6]
 gi|289161361|gb|EFD09251.1| PAS/PAC sensor signal transduction histidine kinase [Enterococcus
           faecium D344SRF]
 gi|291589647|gb|EFF21452.1| sensor protein YycG [Enterococcus faecium E1071]
 gi|291590432|gb|EFF22171.1| sensor protein YycG [Enterococcus faecium E1636]
 gi|291594571|gb|EFF25962.1| sensor protein YycG [Enterococcus faecium E1679]
 gi|291597478|gb|EFF28643.1| sensor protein YycG [Enterococcus faecium U0317]
          Length = 611

 Score =  327 bits (839), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 86/418 (20%), Positives = 175/418 (41%), Gaps = 31/418 (7%)

Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR-KMEIEVMQL 454
              R   I+  R       +    K +   E         +  +     +  ME E  +L
Sbjct: 209 GEMREQAIRIARG-----DYSRKVKVHGQDELGQLADTFNQLAERIEEAQDTMEAERNRL 263

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
            S+L   +DG+   +R G +++ N     L     E+ + +     L+          L 
Sbjct: 264 DSVLSHMTDGVIATDRRGKVITINDMAVSLLDIKNEEAIGQSILTLLDIEEEYT----LR 319

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLS 572
           ++L       L++ T     ++ +L +   + +      S     +HD++E ++ + +  
Sbjct: 320 KLLEDPNEMVLDRSTSTLESDQMILRVDFSMIRRESGFISGLVAVLHDVTEQEKTERE-- 377

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
                       + +F++ VSHE+RTPLT++  + E +    +          +      
Sbjct: 378 ------------RREFVSNVSHELRTPLTSMRSYIEALSEGAW--KDEEVAPNFLKVTLD 423

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA--NEKRILIRTSF 690
             + ++ ++NDLL++S++++G   L  E V+ +E V+  +    +     EK   IR  F
Sbjct: 424 ETDRMIRMINDLLNLSRMDTGNTQLQLEYVNFNELVNFVLDRFDMMVGNQEKNYKIRREF 483

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
                 +  D   + Q+  NI++NAI ++P GG I       ++  VIL + D G+G+  
Sbjct: 484 TQRDLWVEVDTDKIIQVVDNIMNNAIKYSPDGGTITCRL-LETHNNVILSITDQGLGIPK 542

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            +L +  + F ++  ++     GTGLGL +++ ++ A+ G  +  S   KG+   I  
Sbjct: 543 KDLNRVFERFYRVDKARARAQGGTGLGLAISREVIKAHRGAIWAESKEGKGSTFYISL 600


>gi|317129906|ref|YP_004096188.1| multi-sensor signal transduction histidine kinase [Bacillus
           cellulosilyticus DSM 2522]
 gi|315474854|gb|ADU31457.1| multi-sensor signal transduction histidine kinase [Bacillus
           cellulosilyticus DSM 2522]
          Length = 592

 Score =  327 bits (839), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 83/365 (22%), Positives = 172/365 (47%), Gaps = 28/365 (7%)

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
           E++  +L ++++    G+ +IN +G I   N+    +F    +  + K +   ++     
Sbjct: 243 EVQQDRLETLIDNMGSGLLLINSKGDITLVNKTCQSIFQENTDHWINKLYYQVIKHREVI 302

Query: 508 VMNHYL---TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564
                +    + +   L   +             +     I      +   L  HDI+E 
Sbjct: 303 KFIQEILLTEKRIKKHLALPIGIEIRHFDVYGAPI-----IGSDLSLTGIVLVFHDITEL 357

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           K+ +                + DF+A VSHE++TP+T++ GF+E + +   G + + +  
Sbjct: 358 KKLE--------------QARKDFVANVSHELKTPVTSLKGFTETLLS---GAVHDEQLR 400

Query: 625 E-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
           E +   I      +  +++DLL++SKIE  +  L+++ V++D  +S+   +++  A  K 
Sbjct: 401 EKFLTIISNESERLESLIHDLLELSKIEGSQFVLNWDLVNIDVLLSDVFMMLESKAQNKN 460

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
           I        +   I AD   +KQ+ +NI++NAI +TP+ G++ +       E VI+ V+D
Sbjct: 461 IHFSKEVIGDT-VIEADAHRIKQVFINIINNAIMYTPNDGEVHVKV-IEKAETVIVEVQD 518

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TG+G++  E+ +  + F ++  ++     GTGLGL + K +++A+     + S   +GT 
Sbjct: 519 TGIGISKKEIPRIFERFYRVDRARSRNSGGTGLGLAIVKHLIEAHRATMSVDSEVGQGTT 578

Query: 804 IEIIF 808
            ++ F
Sbjct: 579 FKMEF 583


>gi|218887627|ref|YP_002436948.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218758581|gb|ACL09480.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 874

 Score =  327 bits (839), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 114/763 (14%), Positives = 240/763 (31%), Gaps = 88/763 (11%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +DA   ++  +      +G                    D    +G              
Sbjct: 154 VDADALVRFANPAALAMLGR-------------GLPGVPDLPGLLGQ--PSPVPVRDDEL 198

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +G N  + +++   P+   +   +       +             +  + ++  + 
Sbjct: 199 DLCGDGDNPCL-VEVRTAPVTWDDAPAT----LVSLRDITAQRQAERALREAELRYRTIF 253

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK----------TEK 258
           E      SV + + D  + +    +   +       +     DDV +           E 
Sbjct: 254 EHSLDGISVYEHRDDGSAPRLVDCNRGYERMAGRTRDNLRDMDDVRRLQVYLGGRKPPEP 313

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN--NSKESFEYLSHRNHPSLSAYFD 316
           +               +   +  +   +     +++                        
Sbjct: 314 FRDDGGLRGPQSAVYSWLRPDGRENWIESVSVPVRDGDRVLVFGIGRDVSRRRKQEEALQ 373

Query: 317 EGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
           + E       +  P+  F+    G+    N  F +L  + + +     G  S L+   + 
Sbjct: 374 QSEARFRAVFEHAPLGVFITDHDGSFVKTNRLFNVLHGFAAAEL--PLGHFSELVYGHEA 431

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
            D  A+   +           +  L +          +         +  +     G+  
Sbjct: 432 GDVRALFAELHRGERNGFFLETRHLRS----DGTVFPVRLAVAAIRGRKADLQYAVGMLE 487

Query: 436 EDVDTRINKRKMEIEVMQLCS-------------------------ILEATSDGIAIINR 470
           +  + R  + +++    +L +                         IL + S+G+ + + 
Sbjct: 488 DISERRAAEAELQGYRARLENMVLERTRDLEQALGTAESHREKIDLILRSVSEGLLVTDP 547

Query: 471 EGIILSTNRAVSKLFGYP-VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
           +  ++ TN A   + G     D++ +     +E         +  +              
Sbjct: 548 DHRVVLTNPAAEDILGLAAPGDLVAEAVADLIEDAPLRKRLVHCLDDTMGGAPCQFGFSR 607

Query: 530 LGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
                     +      +            +HD++  +              +    K++
Sbjct: 608 PTEAGGVHHYTASTSEVRDAGGGRTGVVTVLHDVTSER--------------ELDRMKNE 653

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           FL   +HE+RTPLT I+GFSE++      PL      +Y  YI+    LV  IV DLLDI
Sbjct: 654 FLTTAAHELRTPLTTILGFSELLVTGGDIPLV--EQRQYLGYINEQAALVSGIVADLLDI 711

Query: 648 SKIESGK-MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706
           S+IE G+  +L   P  L   +   ++        +R   R          + D   V Q
Sbjct: 712 SRIEMGQGFSLKRRPCDLVALIRRKVA--AHIVGTRRHSFRLLLPETPVPAVVDADKVAQ 769

Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
           +  N+LSNA+ ++P GG + +      +    + VRD G+GM+  +L +  + F +   S
Sbjct: 770 VLDNVLSNAVKYSPGGGVVEVRLRPGQDAH-EVSVRDNGMGMSPEQLSRMFEKFYRGDAS 828

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
                 GTGLG+ + K +++A+ G+  + S    GT +    P
Sbjct: 829 NTG-IPGTGLGMSIVKHLIEAHGGEVAVESAKDVGTTVRFTLP 870



 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 40/427 (9%), Positives = 111/427 (25%), Gaps = 28/427 (6%)

Query: 171 RNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP 230
           R  E +       +             ++  ++   +         V      +    +P
Sbjct: 107 RKGEVAEGLIVRTIRYAIDRKRAEGALRQHRQRLETIISANPDGMLVVDADA-LVRFANP 165

Query: 231 PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG 290
                +   +  + +       + +    P+   E     + ++   + +          
Sbjct: 166 AALAMLGRGLPGVPDL---PGLLGQPSPVPVRDDELDLCGDGDNPCLVEVRTAPVTWDDA 222

Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY---SHG---NLFYA 344
                                     E E       +       VY     G    L   
Sbjct: 223 PA-----TLVSLRDITAQRQAERALREAELRYRTIFEHSLDGISVYEHRDDGSAPRLVDC 277

Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
           N  +  +      D++     +  L    ++       P             SA    ++
Sbjct: 278 NRGYERMAGRTR-DNLRDMDDVRRL----QVYLGGRKPPEPFRDDGGLRGPQSAVYSWLR 332

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
            +   +   +        +  + +   GI  +    R  +  ++    +  ++ E    G
Sbjct: 333 PDGRENWIESVS---VPVRDGDRVLVFGIGRDVSRRRKQEEALQQSEARFRAVFEHAPLG 389

Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
           + I + +G  + TNR  + L G+   ++    F+  +  +    +     E+   +    
Sbjct: 390 VFITDHDGSFVKTNRLFNVLHGFAAAELPLGHFSELVYGHEAGDVRALFAELHRGERNGF 449

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
               T     +  +  +R+ +  +             + DISE +  + +L   +   E 
Sbjct: 450 F-LETRHLRSDGTVFPVRLAVAAIRGRKADLQYAVGMLEDISERRAAEAELQGYRARLEN 508

Query: 581 ESSHKSD 587
               ++ 
Sbjct: 509 MVLERTR 515



 Score = 44.6 bits (104), Expect = 0.077,   Method: Composition-based stats.
 Identities = 28/200 (14%), Positives = 58/200 (29%), Gaps = 13/200 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR--QNTW 143
            +  D  G   + +       G  A ++      ++           +   L R  +N +
Sbjct: 390 VFITDHDGSFVKTNRLFNVLHGFAAAELPLGHFSELVYGHEAGDVRALFAELHRGERNGF 449

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
           + +T     +GT    P+ LA   I  R  +       G++          A  +    +
Sbjct: 450 FLETRHLRSDGT--VFPVRLAVAAIRGRKADLQYA--VGMLEDISERRAAEAELQGYRAR 505

Query: 204 FSHLH-------EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256
             ++        E   G +   +EK D+  +      L        +    A +D +   
Sbjct: 506 LENMVLERTRDLEQALGTAESHREKIDLILRSVSEGLLVTDPDHRVVLTNPAAEDILGLA 565

Query: 257 EKYPLLTSEESSLPEQEDFH 276
               L+    + L E     
Sbjct: 566 APGDLVAEAVADLIEDAPLR 585


>gi|70731183|ref|YP_260924.1| sensory box histidine kinase/response regulator [Pseudomonas
           fluorescens Pf-5]
 gi|68345482|gb|AAY93088.1| sensory box histidine kinase/response regulator [Pseudomonas
           fluorescens Pf-5]
          Length = 775

 Score =  327 bits (839), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 123/602 (20%), Positives = 236/602 (39%), Gaps = 30/602 (4%)

Query: 221 KYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE-QEDFHTIN 279
             +  + ++     R+      +   +    +   + +  LLT  E  LP   +    I 
Sbjct: 38  STERQTARAEEDVRRVLLVQGDIQAVHTLLAEAAASVRGYLLTRREDFLPAYLQARPQIE 97

Query: 280 LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG 339
                  Q     +            R           G      TV        + +  
Sbjct: 98  AALQRLDQNVQDPRMRDYLQTITPLIRTKLDGLVALRNGSRDDAATV----TAILIDNKQ 153

Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLST-----LLDAPKLSDNNAIKPVMLYRSDRTCI 394
            L         +   +     E +   +      L      +       ++        I
Sbjct: 154 VLDVLREQISAMRVREDALLAERSAAAAATRMRLLFATLLAAGCGLFGAIVAVLLLSRGI 213

Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
               R+  +Q N +       +  +   Q         +          +R +     +L
Sbjct: 214 V--TRVQQVQGNAQRLALGQPLRPQAPEQDEIGQLGTRLVEAGQLLAERERALRDNEERL 271

Query: 455 CSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
             I++   D GI  ++  G + + N    ++ GY  ++I+ + F++F             
Sbjct: 272 RLIIDGVKDYGIFALDTAGRVTTWNVGAERIKGYSEQEIIGRHFSLFYLPEECPQHPDM- 330

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKN 569
             +          +      K+       ++I     +      +S    DI++ +  + 
Sbjct: 331 -ALREATAHGHYMEEAWRCRKDGSRFWASVVITAQYDASGALRGFSKITRDITDRRAAEI 389

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
            L  A++ AE  S  KS+FL+R+SHE+RTPL AI+GF++++         N        +
Sbjct: 390 ALGTAREEAESASRAKSEFLSRMSHELRTPLNAILGFAQLL-----DMDSNAGQRPQVGH 444

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR-- 687
           I R+G  +L ++N++LDI++IE+G++ L+ EP++L   + EA++LV   A +  I +   
Sbjct: 445 ILRAGQHLLGLINEVLDIARIEAGRLPLNVEPMALAAVLHEALTLVSPMAADAGITLAPL 504

Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747
              A +   ++AD + + Q+ LN+LSNAI +  +GG++ I     ++  + L V DTG G
Sbjct: 505 PELAADSG-VIADRQRLIQVLLNLLSNAIKYNRAGGRVSIDVAIEAS-RLRLSVLDTGAG 562

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           +T   LE+  KPF ++      R EGTGLGL L++++++   G   + STP  G+   + 
Sbjct: 563 ITAERLERLFKPFERLDAD--PRVEGTGLGLALSRSLLEMMDGSLGVQSTPGSGSCFTLE 620

Query: 808 FP 809
            P
Sbjct: 621 LP 622



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 26/310 (8%), Positives = 63/310 (20%), Gaps = 15/310 (4%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH--IDPNNHIGDLLKRQNTW 143
            + +D  G +   +    +  G    ++IG               P+  + +       +
Sbjct: 283 IFALDTAGRVTTWNVGAERIKGYSEQEIIGRHFSLFYLPEECPQHPDMALREA-TAHGHY 341

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +      +G+  +  + + A   Y  +    GF    I                  ++
Sbjct: 342 MEEAWRCRKDGSRFWASVVITAQ--YDASGALRGFSK--ITRDITDRRAAEIALGTAREE 397

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
                  K    S    +              +    ++                  L+ 
Sbjct: 398 AESASRAKSEFLSRMSHELRTPLNAILGFAQLLDMDSNAGQRPQVGHILRAGQHLLGLIN 457

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD-----EG 318
                   +     +N+                            P      D     + 
Sbjct: 458 EVLDIARIEAGRLPLNVEPMALAAVLHEALTLVSPMAADAGITLAPLPELAADSGVIADR 517

Query: 319 ENLTPETVDKCPIPFFVYSHG---NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
           + L    ++           G   ++  A  +  L            A  L  L    + 
Sbjct: 518 QRLIQVLLNLLSNAIKYNRAGGRVSIDVAIEASRLRLSVLDTGAGITAERLERLFKPFER 577

Query: 376 SDNNAIKPVM 385
            D +      
Sbjct: 578 LDADPRVEGT 587


>gi|171320942|ref|ZP_02909936.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ambifaria
           MEX-5]
 gi|171093807|gb|EDT38944.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ambifaria
           MEX-5]
          Length = 594

 Score =  327 bits (839), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 101/500 (20%), Positives = 191/500 (38%), Gaps = 31/500 (6%)

Query: 325 TVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
            +   P         G + Y N +   L      D          L       D+  ++P
Sbjct: 1   MLQALPDGVIAADATGRVTYVNAAAAALAGGALEDA-TGRPVCDVL--HMFDRDDRRVQP 57

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
             L R+     A S R      +  + + +        +          +  +       
Sbjct: 58  TPLERALGGVHARSDRHWLHGADGSSRVPIVEAASPIVDAHGRLDGAVLLLRD-----AG 112

Query: 444 KRKMEIEVMQL-CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
             +   EV +L  ++++A+ D I  I+REG I+S N A  ++FGY   D   +P    + 
Sbjct: 113 TERASTEVSRLQRAVVDASPDAIVGIDREGRIVSWNPAAQRIFGYDEADARGRPLETLVA 172

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM---- 558
                   + L +              L   ++ +     +    +   +   + +    
Sbjct: 173 MRWLR--RNPLADSFDTMREAVGPLELLCVRRDGRRFRATVSAGPVRGDARSCVALSLTL 230

Query: 559 --------HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
                    D+   +  +      +  A+  +  K + LA VSHE+RTPL  I G+ EV+
Sbjct: 231 RETGAQRRRDLRAQRSLQGARDA-RDRADTSNRLKDELLATVSHELRTPLNVIYGWIEVL 289

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
           +N R   L     ++  + IDRS   +  +V D+LD S + +GK+ +   PV +    S+
Sbjct: 290 RNTRDDAL----QLQAIDAIDRSARSLTRMVGDILDASSLATGKLRIDPMPVDVVRLFSD 345

Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
            +   Q  A+   I++    A +   +  D   ++Q+  N++SNA+ FTP GG + ++ +
Sbjct: 346 TVGAFQTAASSAGIVLEFECAASACVVSGDAERLRQMLANLVSNALKFTPGGGAVTVTLS 405

Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
              +   +L V DTG G+    +      F +  +S      G GLGL + + +   + G
Sbjct: 406 -RDDAHAVLVVADTGQGIPPAFIPHVFDMFRRADDSPASPRRGLGLGLSIVRHIAQLHGG 464

Query: 791 KFYIFST-PAKGTLIEIIFP 809
           +  + S    +G    +  P
Sbjct: 465 QVRVESAGRNRGATFTVTLP 484



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/376 (9%), Positives = 88/376 (23%), Gaps = 20/376 (5%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID----PNNHIGDLLKRQNTWYG 145
           DA G +  ++       G       G  +CDV  +   D        +   L   +    
Sbjct: 13  DATGRVTYVNAAAAALAGGALEDATGRPVCDVLHMFDRDDRRVQPTPLERALGGVHARSD 72

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGF----RGFGIVHVNRVDNDPRALGKRLD 201
           +  L   +G++  VPI  AA PI   +    G     R  G    +   +  +       
Sbjct: 73  RHWLHGADGSS-RVPIVEAASPIVDAHGRLDGAVLLLRDAGTERASTEVSRLQRAVVDAS 131

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
                  + +    S       IF         R    + ++     +            
Sbjct: 132 PDAIVGIDREGRIVSWNPAAQRIFGYDEADARGRPLETLVAMRWLRRNPLADSFDTMREA 191

Query: 262 LTSEE--------SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
           +   E                   +  +  +      TL+    +    L  +     + 
Sbjct: 192 VGPLELLCVRRDGRRFRATVSAGPVRGDARSCVALSLTLRETGAQRRRDLRAQRSLQGAR 251

Query: 314 YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDD--IEIAGGLSTLLD 371
              +  + +    D+  +    +           ++ + +    D   ++    +     
Sbjct: 252 DARDRADTSNRLKDEL-LATVSHELRTPLNVIYGWIEVLRNTRDDALQLQAIDAIDRSAR 310

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
           +      + +    L             +  +  +   +            +F       
Sbjct: 311 SLTRMVGDILDASSLATGKLRIDPMPVDVVRLFSDTVGAFQTAASSAGIVLEFECAASAC 370

Query: 432 GIEPEDVDTRINKRKM 447
            +  +    R     +
Sbjct: 371 VVSGDAERLRQMLANL 386



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/226 (11%), Positives = 58/226 (25%), Gaps = 6/226 (2%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G +   +    +  G       G  L  +  +  +  N  + D         G   
Sbjct: 138 IDREGRIVSWNPAAQRIFGYDEADARGRPLETLVAMRWLRRNP-LADSFDTMREAVGPLE 196

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           L  +          ++A P+    R         +    R     R    R  +      
Sbjct: 197 LLCVRRDGRRFRATVSAGPVRGDAR-----SCVALSLTLRETGAQRRRDLRAQRSLQGAR 251

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           + +    +  + K ++ +  S      +      +      +DD L+ +    +     S
Sbjct: 252 DARDRADTSNRLKDELLATVSHELRTPLNVIYGWIEVLRNTRDDALQLQAIDAIDRSARS 311

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
           L           +  T K     +  +    F         + S+ 
Sbjct: 312 LTRMVGDILDASSLATGKLRIDPMPVDVVRLFSDTVGAFQTAASSA 357


>gi|303247117|ref|ZP_07333392.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
 gi|302491543|gb|EFL51428.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
          Length = 997

 Score =  327 bits (839), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 121/697 (17%), Positives = 233/697 (33%), Gaps = 58/697 (8%)

Query: 165 ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDI 224
           ALP+++     +   G  +V      N         + ++  L E       +   +   
Sbjct: 171 ALPVFAVYPVATAALGLLLVRRL-ARNQLVMRLSESESRYQSLFENSHAVMLLIDPEDGA 229

Query: 225 FSQQSP-----PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTIN 279
               +P         R + +   + +        ++           ++   +       
Sbjct: 230 VVDANPSACAYYGWTREEIRQKRMRDINTLPPAAVRAAMVNARNRRVTTFSFRHRLADGR 289

Query: 280 LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG 339
           + +         L          +   +         E E    + V+  P   FV + G
Sbjct: 290 IREVEVNAGPIRLMGRELLYSVVIDVTDRLEAQRRLIESEKRFRQLVEHAPSGVFVQTGG 349

Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399
              Y NP    L    +   +  +  L  +       ++ A+    ++ +D    A    
Sbjct: 350 LFAYVNPHARSLLDVDTPGALVGSPVLERI-----APEDRAMVRARMHETDVLHRAVPMI 404

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459
              +      +               E         +  + + ++ ++ +   ++ S+  
Sbjct: 405 EENMLRMDGGAFLAEVAAVPVEWDGKE--GSLVFFHDITERKRDEERLRLSEARMQSLFA 462

Query: 460 ATSDGIAIINREGIILSTNRAVSKLFG-----------------YPVEDILRKPFTVFLE 502
            T    A ++   +++       +L G                    E    +    +  
Sbjct: 463 VTQMEAAGLDE--LLVHAVEEARRLTGSLFGCMFVEDGADGRLSRVAEACDGQCLRHWPG 520

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS------LRIIIKKLPFSSCYSL 556
                 +    +E L+      L+    G   E   +       +  ++        Y  
Sbjct: 521 GPFERQVPEQWSEALTGRRPIVLDGGPGGQDGETLCVPIVSDKEVAAMLVVAGKRKPYDA 580

Query: 557 TMHDIS-----------EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
           +   I+             +++   L  AK+ AE+ S  KS+FLA +SHE+RTPL  I G
Sbjct: 581 SDIRITSLFMDAVWRMVARRRDAAALLSAKEAAERASRVKSEFLANMSHELRTPLNGIQG 640

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
            ++++      P       EY      S   +  ++ D+LD+S++ESGK+ L  EP  L 
Sbjct: 641 MTQLLAATSLTP----EQREYVRAALVSCRRLTRLLGDILDLSRVESGKLTLLPEPFRLA 696

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG- 723
           + +S   +       E  I   T  A  +P IL  D   V+QI  N++ NA+ FT +GG 
Sbjct: 697 DLLSAVAAAFMPACLEAGIDWGTEVAPGVPEILFGDEGRVRQILYNLVGNAVKFTKTGGV 756

Query: 724 QIIISTTHTSN---EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
           ++ +            +   V DTGVG+   ELE+  + F Q+  S   R +G GLGL +
Sbjct: 757 RLEVWAGPVDASGCGSLFFAVTDTGVGIPAPELERIFEAFHQVERSFSRRFQGAGLGLAI 816

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
            + ++D   G   + S   +GT      PL      H
Sbjct: 817 VRRLLDLMQGTISVESEVGRGTRCVCALPLIRPQPQH 853



 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 42/367 (11%), Positives = 87/367 (23%), Gaps = 28/367 (7%)

Query: 89  IDAH-GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
           ID   G + + +       G    ++   R+ D++    + P      ++  +N      
Sbjct: 223 IDPEDGAVVDANPSACAYYGWTREEIRQKRMRDINT---LPPAAVRAAMVNARNRRVTTF 279

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
           +            +++ A PI    RE      + +V       + +      +K+F  L
Sbjct: 280 SFRHRLADGRIREVEVNAGPIRLMGRELL----YSVVIDVTDRLEAQRRLIESEKRFRQL 335

Query: 208 HEIKKGHSSVEKEK---YDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL-KTEKYPLLT 263
            E       V+      Y     +S          V S        +D      +     
Sbjct: 336 VEHAPSGVFVQTGGLFAYVNPHARSLLDVDTPGALVGSPVLERIAPEDRAMVRARMHETD 395

Query: 264 SEESSLPE-QEDFHTINLNQYTKKQYFGTLQ--NNSKESFEYLSHRNHPSLSAYFDEGEN 320
               ++P  +E+   ++   +  +     ++          +                E 
Sbjct: 396 VLHRAVPMIEENMLRMDGGAFLAEVAAVPVEWDGKEGSLVFFHDITERKRDEERLRLSEA 455

Query: 321 LTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
                               L +A      LT       +     +    D        A
Sbjct: 456 RMQSLF-AVTQMEAAGLDELLVHAVEEARRLTGS-----LFGCMFVEDGADGRLSRVAEA 509

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
                L            R    QW    S A+T       +  P       +    V  
Sbjct: 510 CDGQCLRHWPGGPFE---RQVPEQW----SEALTGRRPIVLDGGPGGQDGETLCVPIVSD 562

Query: 441 RINKRKM 447
           +     +
Sbjct: 563 KEVAAML 569


>gi|328873791|gb|EGG22157.1| histidine kinase [Dictyostelium fasciculatum]
          Length = 1072

 Score =  327 bits (839), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 92/353 (26%), Positives = 157/353 (44%), Gaps = 19/353 (5%)

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL--EQNTPSVMNHYLTEILSLDL 521
           G+     +G I+  N A    FGY   D+        +        +    L E+ S   
Sbjct: 579 GVMFSTLKGTIIDANDAFLSTFGYSRSDLENGHVDWMMMTPPEYYEISARALQELKSKRW 638

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE 581
            Q +EK     +  +  + +   +       C +    D+S ++Q +         A + 
Sbjct: 639 CQPIEKAYFHRSGAKVPVLISAAMVDGTDEQCITFVF-DLSRYRQAEES-------AIQA 690

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
           +  KS F+A +SHE+RTP   I+G +++I + +      P   + A  I +S + ++ ++
Sbjct: 691 NKLKSQFIANISHELRTPCHGILGMTQIILDSK---ELTPSQRDNAETIKKSTDNLVSLI 747

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA---NNIPRIL 698
           +D+LD SKIESGKM L F    L   V + +      +N K I +           P + 
Sbjct: 748 DDILDFSKIESGKMTLDFSSFELVSMVEQVLHEHSKLSNAKAIDLVFIMGREYPVPPVLF 807

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEV--ILRVRDTGVGMTNYELEK 755
            D + +KQI  N++SNA+ FT +G   I IST + S +++     V+DTG+G+ +    +
Sbjct: 808 GDRKRIKQILSNLVSNAVKFTEAGHVLIEISTEYESGDQISLKFSVQDTGIGIPHENASQ 867

Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
              PF Q+  S   +  G+GLGL + K +VD   G     S   +G+      
Sbjct: 868 LFVPFIQLDGSSSRKHGGSGLGLSIVKELVDLMGGTLSFESKKGQGSTFWFSL 920


>gi|315654108|ref|ZP_07907024.1| sensor histidine kinase VicK [Lactobacillus iners ATCC 55195]
 gi|329919831|ref|ZP_08276782.1| PAS domain S-box protein [Lactobacillus iners SPIN 1401G]
 gi|315488804|gb|EFU78450.1| sensor histidine kinase VicK [Lactobacillus iners ATCC 55195]
 gi|328937178|gb|EGG33606.1| PAS domain S-box protein [Lactobacillus iners SPIN 1401G]
          Length = 612

 Score =  327 bits (839), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 86/392 (21%), Positives = 173/392 (44%), Gaps = 29/392 (7%)

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
           ++  E      I    ++        + E  +L ++L   +DG+   +R G I   N   
Sbjct: 232 DEMGELARAFNILSVRIERSQEVS--DSERRRLDNVLMHMTDGVIATDRHGNITIINETA 289

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
                    ++  +P T  L     +     + +++S      +        +       
Sbjct: 290 LNFLDKTENEVKGEPITQLLGLKEVT-----IQDLMSTQQELIVTANVNTHDELILHADF 344

Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
            +I +   F S     +HDI+E ++ +N+              +  F++ VSHE+RTPLT
Sbjct: 345 SLIQRVTGFVSGLICVLHDITEQQKNENE--------------QRQFVSNVSHELRTPLT 390

Query: 602 AIIGFSEVIKNQRFGPLGNPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
           ++  + E + +   G   N     ++   I      ++ ++NDLL++S+++ G + +  E
Sbjct: 391 SLRAYVEALND---GAWKNENIAPQFLGVIQNETERMIRMINDLLNLSRMDRGVVKMDLE 447

Query: 661 PVSLDEAVSEAISLVQLYANEKRIL---IRTSFANNIPRILADLRSVKQIALNILSNAIH 717
            V+L++ +S  ++   +      +    IR  F +    +  D   + Q+  NI++NAI 
Sbjct: 448 WVNLNDFLSHILNRFDMMLKNDGVKKYKIRRIFPHQALWVEIDTDKMMQVIDNIMNNAIK 507

Query: 718 FTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
           ++P GG I I     +++ VIL V D G+G+   +L +    F ++  ++  +  GTGLG
Sbjct: 508 YSPDGGLITIRL-LQTHKHVILSVSDQGLGIPRKDLSRIFDRFYRVDKARSRKQGGTGLG 566

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           L ++K +V+A+ GK +  S+   G+   I  P
Sbjct: 567 LAISKEIVEAHHGKIWADSSEGNGSTFYISIP 598


>gi|260173727|ref|ZP_05760139.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|315921992|ref|ZP_07918232.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|313695867|gb|EFS32702.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
          Length = 785

 Score =  327 bits (839), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 100/521 (19%), Positives = 198/521 (38%), Gaps = 25/521 (4%)

Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDI 360
            L      +          +    +DK       V   G L YAN  F+         ++
Sbjct: 145 VLIMCRDITERVATQRQLEVFKSVLDKVSDSILAVAEDGTLVYANKQFIEEYGVT--QEL 202

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
                    L     +     + + + R     +A  A        +E    ++     +
Sbjct: 203 GTQKIYD--LRVSMTNKEAWEQKLQVIRDHEGSLAYRAAYIPYGHTKERVHQVSTFLIRE 260

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR--EGIILSTN 478
            NQ            +  D    + ++    + L  IL      + + +   +   L  N
Sbjct: 261 NNQE----LTWFFTQDITDVIKKRDELRELNLLLDGILNNIPVYLFVKDPEDDLRYLYWN 316

Query: 479 RAVSKLFGYPVEDILRKPFTVFLE-QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
           +A +   G P    +                      E+L    R  +++  L +  E +
Sbjct: 317 KAFADHSGIPASKAIGHTDYEIFPVHGDAEKFRKDDLELLQTHKRIDMQETYLSANGEAR 376

Query: 538 LLSLRIIIKKLPFSSCY-SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
           ++     +  +            DI+  +  + +L  A+  AE+    KS FLA +SHEI
Sbjct: 377 IVQTLKALVPMEGRKPLLIGISWDITNLQNIEQELIKARIKAEQSDRLKSAFLANMSHEI 436

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTPL AI+GFS+++               Y+  I+++ +++L ++ND+LD+SKIE+G + 
Sbjct: 437 RTPLNAIVGFSQLL----PSAETAEEKKLYSGIINQNSDILLQLINDILDLSKIEAGTLE 492

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716
               P++L E      ++ +    E  + +          +  D   + Q+  N L+NA 
Sbjct: 493 YIKRPMNLGEVCRTIYTVHKERVKE-GVTLVFDNEEEDLLMEGDQNRIMQVITNFLTNAS 551

Query: 717 HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
            FT  G +I +       + + + V+DTG+G+   +++   + F ++ +      +GTGL
Sbjct: 552 KFTYEG-EIRLGFGRMDKD-IRVYVKDTGIGIEPEKVDHIFERFVKLNSF----AQGTGL 605

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
           GL + + +++   G+  + S   KG+      P Y+ +  H
Sbjct: 606 GLSICRMIIEKIGGEIGVTSELGKGSTFYFTIP-YEETGEH 645



 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/170 (11%), Positives = 47/170 (27%), Gaps = 22/170 (12%)

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLC-----------------SILEATSDGIAIINREGI 473
             +  +    +    ++  E+  L                   IL++  D + + N+  +
Sbjct: 8   EALLEQLEALKKENEQLRKELSTLRDEKYNDRPVSFKEKYAVRILDSLPDMLTVFNQSEV 67

Query: 474 -ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
            I   +   +   G   +D         +       ++  +   ++     T        
Sbjct: 68  GIEVVSNEETNHVGISNKDFRGMRMQDMVPPEAYQNIHSNMRHAITTGTVSTAHHEL--- 124

Query: 533 TKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES 582
               +       I  L       +   DI+E    + +L   K + +K S
Sbjct: 125 DFNGERHYYENRIFPL-DEEYVLIMCRDITERVATQRQLEVFKSVLDKVS 173


>gi|237797729|ref|ZP_04586190.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|331020579|gb|EGI00636.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. oryzae str. 1_6]
          Length = 782

 Score =  327 bits (838), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 106/419 (25%), Positives = 197/419 (47%), Gaps = 18/419 (4%)

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
           AR+H +Q N +       +  +   +         +          +R +     +L  I
Sbjct: 222 ARVHQVQRNAQRLALGHPLLPQPPEKDEIGQLGTRLIEAGQLLAERERALRDNEERLRLI 281

Query: 458 LEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           +E   D GI  ++R+G + + N    ++ GY  ++I+ + F+VF               +
Sbjct: 282 IEGVKDYGIFALDRDGYVTTWNAGAERIKGYTEQEIIGQHFSVFYLPQECPQHPDM--AL 339

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNKLS 572
               +     + +    K+       ++I     S      +S    DIS+ +  +  LS
Sbjct: 340 HEATVNGRYTEESWRRRKDGSRFWASVVITAQYDSHDELRGFSKITRDISDRRVAEIALS 399

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
            A++ AE+ S  KS+FL+R+SHE+RTPL +I+GF++++                  +I R
Sbjct: 400 TAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLL-----DMDSPASQRPQIGHILR 454

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA- 691
           +G  +L ++N++LDI++IE+G ++L+ EPV L   + EA+ LV   A +  I + +    
Sbjct: 455 AGQHLLKLINEVLDIARIEAGHVSLNLEPVPLSSVLREALVLVSPMATDASIEL-SELPQ 513

Query: 692 -NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
             +   ++AD + + Q+ LN+LSNAI +    G++ I    ++   V + V DTG G+  
Sbjct: 514 LPDELGVVADRQRLIQVLLNLLSNAIKYNRPDGKVRIEVGQSA-GRVTVSVVDTGYGIAP 572

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             + +  KPF ++        EGTGLGL L+K+M++   G   + +T  +G    +  P
Sbjct: 573 ERIGQLFKPFERLDA--NPSVEGTGLGLALSKSMLEMMHGGLSVDTTLNEGCRFTLELP 629



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/265 (8%), Positives = 69/265 (26%), Gaps = 20/265 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH--IDPNNHIGDLLKRQNTW 143
            + +D  GY+   +    +  G    ++IG               P+  + +       +
Sbjct: 290 IFALDRDGYVTTWNAGAERIKGYTEQEIIGQHFSVFYLPQECPQHPDMALHEATVNGR-Y 348

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGF---------RGFGIVHVNRVDNDPR 194
             ++     +G+  +  + + A   Y  + E  GF         R    + ++    +  
Sbjct: 349 TEESWRRRKDGSRFWASVVITAQ--YDSHDELRGFSKITRDISDRRVAEIALSTAREEAE 406

Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254
              +   +  S +    +   +       +    SP         +    ++     + +
Sbjct: 407 RASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSPASQRPQIGHILRAGQHLLKLINEV 466

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
                 L  +   +     +   + L+   ++         +  S E       P     
Sbjct: 467 ------LDIARIEAGHVSLNLEPVPLSSVLREALVLVSPMATDASIELSELPQLPDELGV 520

Query: 315 FDEGENLTPETVDKCPIPFFVYSHG 339
             + + L    ++            
Sbjct: 521 VADRQRLIQVLLNLLSNAIKYNRPD 545


>gi|194364225|ref|YP_002026835.1| PAS/PAC sensor hybrid histidine kinase [Stenotrophomonas
           maltophilia R551-3]
 gi|194347029|gb|ACF50152.1| PAS/PAC sensor hybrid histidine kinase [Stenotrophomonas
           maltophilia R551-3]
          Length = 662

 Score =  327 bits (838), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 94/514 (18%), Positives = 188/514 (36%), Gaps = 42/514 (8%)

Query: 317 EGENLTPETVDKCPIPFFV----YSHGN-----LFYANPSFLLLTKYKSVDDIEIAGGLS 367
              +L    +++    F V    +             N +F   T  K          +S
Sbjct: 6   PEPDLHHGVLERINAGFCVIQVLFDGDRAVDYRFIEVNDAFERHTGLKDA----RGQRMS 61

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
            L       + +  +                    +          +F         P  
Sbjct: 62  AL---EPHHEEDWFRIYGEVARSGRPAQFEMEARALGR--------SFAVDAVRVGRPGE 110

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
                +  +    +  + ++     +  ++ +     + +++  G     N A S+ FG 
Sbjct: 111 DKVGILFFDITARKQMEVELGESEARFSALADGLPMPVWVLDERGHARFVNSAFSEFFGG 170

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
               +    +   +  +  SV  + L E L    ++++  +      + +   L +  + 
Sbjct: 171 DETRVPEDVWRGLVHPDDASVFEYELQEALK--AQRSMHALVRARRADGQWRWLEMNARP 228

Query: 548 LPFSSCYSLTMH----DISEWKQEK---NKLSHAKKIAEKES----SHKSDFLARVSHEI 596
                   + +     D++E ++ +    +L  +++ A   +      K +FLA +SHE+
Sbjct: 229 RFSRMGRFIGLAGSSPDVTERREIELAREELLQSERAARSAAENMARLKDEFLATLSHEL 288

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTPLT I+G+SE++  +           +    I  S      +++D+LD+S +  GK+ 
Sbjct: 289 RTPLTTILGWSELLLQRVDNTSP---LYKGLGVIANSAGAQKRLISDMLDLSSMLLGKVQ 345

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716
           L  E + L   + EAI   +L A  K + +     +    +L D   ++Q+  N+LSNAI
Sbjct: 346 LEVEVLDLCGVLGEAIGAQELVAEGKALDVHLQLPDRPSLVLGDATRLQQVFWNLLSNAI 405

Query: 717 HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
            FTP+ G+I ++         ++ VRDTG G+    L      F Q   +   R  G GL
Sbjct: 406 KFTPAEGRIDVALQ-ADGNHWVITVRDTGDGIAPEFLNHLFSRFRQADGTTTRRHGGLGL 464

Query: 777 GLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFP 809
           GL + + +V+ + G     S     G    +  P
Sbjct: 465 GLAIVQQLVELHGGTVTAASEGHGHGATFTVRLP 498



 Score = 61.2 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 36/374 (9%), Positives = 89/374 (23%), Gaps = 19/374 (5%)

Query: 54  FTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM 113
           F D            +SE  F        +   W +D  G+ + ++    +  G    ++
Sbjct: 117 FFDITARKQMEVELGESEARFSALADGLPMP-VWVLDERGHARFVNSAFSEFFGGDETRV 175

Query: 114 IGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172
                  +            + + LK Q + +        +G   +  +++ A P +SR 
Sbjct: 176 PEDVWRGLVHPDDASVFEYELQEALKAQRSMHALVRARRADG--QWRWLEMNARPRFSRM 233

Query: 173 REFSGFRGFG-IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231
             F G  G    V   R     R    + ++      E                 +    
Sbjct: 234 GRFIGLAGSSPDVTERREIELAREELLQSERAARSAAENMARLKDEFLATLSHELRTPLT 293

Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG- 290
             L     +    +  +     L          +       +    +      + +    
Sbjct: 294 TILGWSELLLQRVDNTSPLYKGLGVIANSAGAQKRLISDMLDLSSMLLGKVQLEVEVLDL 353

Query: 291 -TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS---------HGN 340
             +   +  + E ++      +     +  +L      +    F+             G 
Sbjct: 354 CGVLGEAIGAQELVAEGKALDVHLQLPDRPSLVLGDATRLQQVFWNLLSNAIKFTPAEGR 413

Query: 341 LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400
           +  A  +          D      G++        S           R     +  +   
Sbjct: 414 IDVALQADGNHWVITVRD---TGDGIAPEFLNHLFSRFRQADGTTTRRHGGLGLGLAIVQ 470

Query: 401 HTIQWNRENSLAMT 414
             ++ +     A +
Sbjct: 471 QLVELHGGTVTAAS 484



 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/266 (9%), Positives = 64/266 (24%), Gaps = 21/266 (7%)

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
              F     +      V          +          +     +++    +V ++ +  
Sbjct: 26  QVLFDGDRAVDYRFIEVNDAFERHTGLKDARGQRMSALEPHHEEDWFRIYGEVARSGRPA 85

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
               E  +L        + + +              K    +        +     E E 
Sbjct: 86  QFEMEARALGRSFAVDAVRVGRP----------GEDKVGILFFDITARKQMEVELGESEA 135

Query: 321 LTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
                 D  P+P +V    G+  + N +F                    +       D+ 
Sbjct: 136 RFSALADGLPMPVWVLDERGHARFVNSAFSEFFGGD------ETRVPEDVWRGLVHPDDA 189

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
           ++    L  + +   +  A L   +        +      + ++    +   G  P+  +
Sbjct: 190 SVFEYELQEALKAQRSMHA-LVRARRADGQWRWLEMNARPRFSRMGRFIGLAGSSPDVTE 248

Query: 440 TRI---NKRKMEIEVMQLCSILEATS 462
            R     + ++        S  E  +
Sbjct: 249 RREIELAREELLQSERAARSAAENMA 274



 Score = 48.1 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/236 (8%), Positives = 48/236 (20%), Gaps = 21/236 (8%)

Query: 94  YLKEISEELPKTIGNYAFKMIGMRLCDVSD-ILHIDPNNHIGDLLKRQNTWYGKTTLWPI 152
              E+++   +  G    +   M   +             +           G+   + +
Sbjct: 38  RFIEVNDAFERHTGLKDARGQRMSALEPHHEEDWFRIYGEVAR--------SGRPAQFEM 89

Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212
           E   L     + A+ +     +  G   F                   + +FS L +   
Sbjct: 90  EARALGRSFAVDAVRVGRPGEDKVGILFF----DITARKQMEVELGESEARFSALADGLP 145

Query: 213 GHSSVEKEKYDIFSQQSPPP------HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
               V  E+       S           R+   V     +    D  +   +       +
Sbjct: 146 MPVWVLDERGHARFVNSAFSEFFGGDETRVPEDVWRGLVH--PDDASVFEYELQEALKAQ 203

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
            S+         +      +       +               +     +      
Sbjct: 204 RSMHALVRARRADGQWRWLEMNARPRFSRMGRFIGLAGSSPDVTERREIELAREEL 259


>gi|91772950|ref|YP_565642.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanococcoides burtonii DSM 6242]
 gi|91711965|gb|ABE51892.1| fixL-like, HATPase domain-containing PAS sensor signal transduction
           histidine kinase [Methanococcoides burtonii DSM 6242]
          Length = 396

 Score =  327 bits (838), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 106/398 (26%), Positives = 191/398 (47%), Gaps = 8/398 (2%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
               ++F +N    G     +   +  + +E ++    SI    + GI++++ +G I+  
Sbjct: 3   DGDGDRFRDNEGFVGSVTHYLSKFVEMKLVENDLNIFKSISYKANYGISVLDMDGNIIYA 62

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
           N A S+L GY  +++L   F +F  +     +   L ++LS D  +   +      K+  
Sbjct: 63  NEAFSQLHGYSADELLNINFLMFYHEGQVPHLKRLLDKLLSSDGCE--NEDVWHMRKDGS 120

Query: 538 LLS--LRIIIKKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
           +    L   +     +      + + D++  K+ ++ L  A  IA+  +  KS+FLA VS
Sbjct: 121 IFPAILECNLILDGDNEPSYIFVALRDLTVTKKAEDALKRAMSIADAANCSKSEFLANVS 180

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HE+RTPL +I+GFSE++ + R G L N     Y   +  +GN + +I+N++L+ISKIE+G
Sbjct: 181 HELRTPLNSIVGFSEILLDGRCGGL-NDVQRRYVQNVSNNGNHLSEIINEILEISKIEAG 239

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713
           K  ++ E   +  +V E    +    + K I         +  I  D    K I  ++L 
Sbjct: 240 KAEVNLEDFCILPSVMEVKESLMHSISLKNISFVCDVNPELHPIRLDKTKFKHILHHLLI 299

Query: 714 NAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
           NA+ FT   G + I  +  S+  + + + D G+G+   +L      F Q+  S + +  G
Sbjct: 300 NAVKFTSDHGSVGIHASAISD-MMHIVIFDDGIGIPREQLPHLYDKFYQVDGSTKRKYGG 358

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
           TGLGL L K +V  N G+ ++ S    GT + ++ PL 
Sbjct: 359 TGLGLALTKKLVILNSGQMWVESEVNVGTKVHMMLPLA 396



 Score = 47.7 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/138 (9%), Positives = 35/138 (25%), Gaps = 5/138 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D  G +   +E   +  G  A +++ +          +     + D L   +    +  
Sbjct: 53  LDMDGNIIYANEAFSQLHGYSADELLNINFLMFYHEGQVPHLKRLLDKLLSSDGCENEDV 112

Query: 149 -LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                +G+     ++   +        +     F  +    V        KR        
Sbjct: 113 WHMRKDGSIFPAILECNLILDGDNEPSYI----FVALRDLTVTKKAEDALKRAMSIADAA 168

Query: 208 HEIKKGHSSVEKEKYDIF 225
           +  K    +    +    
Sbjct: 169 NCSKSEFLANVSHELRTP 186



 Score = 42.7 bits (99), Expect = 0.27,   Method: Composition-based stats.
 Identities = 21/136 (15%), Positives = 44/136 (32%), Gaps = 13/136 (9%)

Query: 338 HGNLFYANPSFLLLTKYKSVDDI----------EIAGGLSTLLDAPKLSDNNAIKPVMLY 387
            GN+ YAN +F  L  Y + + +               L  LLD    SD    + V   
Sbjct: 56  DGNIIYANEAFSQLHGYSADELLNINFLMFYHEGQVPHLKRLLDKLLSSDGCENEDVWHM 115

Query: 388 RSDRTCIAASARLHTIQWNRE--NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
           R D +   A    + I       + + +         +  + + +     +  +   ++ 
Sbjct: 116 RKDGSIFPAILECNLILDGDNEPSYIFVALRDLTVTKKAEDALKRAMSIADAANCSKSEF 175

Query: 446 KMEIEVMQLCSILEAT 461
            +     +L + L + 
Sbjct: 176 -LANVSHELRTPLNSI 190


>gi|312886386|ref|ZP_07745996.1| PAS/PAC sensor signal transduction histidine kinase
           [Mucilaginibacter paludis DSM 18603]
 gi|311301171|gb|EFQ78230.1| PAS/PAC sensor signal transduction histidine kinase
           [Mucilaginibacter paludis DSM 18603]
          Length = 867

 Score =  327 bits (838), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 112/758 (14%), Positives = 244/758 (32%), Gaps = 50/758 (6%)

Query: 66  NYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL 125
              ++   F  D        TW++D             +  G     ++  R  D+   +
Sbjct: 143 EEAETRTNFALDAAGMG---TWDLDLINNSVTCDNRCKELFGFPKDGLV--RYEDLLSHM 197

Query: 126 HIDPNNHIG-DLLKRQNTWYGK--TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFG 182
           H D    +   ++   N    +     +   G  L   +       +  N +   +R  G
Sbjct: 198 HPDDIARVDIAVMNAINPQVKENYDVTYRTVGYKLR-WVRCKGRAYFDDNNK--AYRFAG 254

Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS 242
            V        P    +   +K   L E      S+      +    +    +   N +  
Sbjct: 255 TVIDIT----PEINTRDEQQKLLFLIENSSDFISLSTWDGKLTYLNTAGRQMMGFNNMED 310

Query: 243 LTEYY-----AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297
             +         + D +     P +        E    H +             +++   
Sbjct: 311 ALQDAHHYLMPTEVDKINQVILPAMLKNGRWSGELLYRHAVTGQPIPGHVNTLLIKDPLT 370

Query: 298 ESFEYLSHR-NHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYK 355
           E     +             + +      V+       V    GN+ Y N +   L    
Sbjct: 371 EEPLGRATVVRDLRNEIALKKEQQNLITVVENSADMIVVTDLEGNVTYINKAGQQLIGAD 430

Query: 356 SVDD-IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
           ++++  + A G         L        +                       E   A  
Sbjct: 431 NIEECYKKALGYFMPDATHLLGKEVRPNMLKNGAWAGEIQCRHF------KTGEAIPAWL 484

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII 474
                      E +    +  +    +  ++ +         I  A+   + + +    I
Sbjct: 485 NAFTVNDPATGEPIGFASVTRDMRAEKAAQQALAQSEELFRKITIASPAALWMTDINSQI 544

Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
              N       GY + + L   +   + +   +   + LT           +     +  
Sbjct: 545 TYVNEVWINWTGYSLAEQLGAGWLKAVVEEDRTTAANKLTSDFERHKFHESQFRIKSTDG 604

Query: 535 EEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
           + + +      +     +   Y     DI+E KQ +                K DF+   
Sbjct: 605 QLRYIICTGNPQYNTHGAFTGYIGACVDITELKQLQ--------------RQKDDFIGIA 650

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHE++TP+T+I  +++ +        G+ +     + ++   N +  ++ DLLD++KI S
Sbjct: 651 SHELKTPVTSIKAYTQ-LLESMMRKKGDLKEAGMISKMNVQINRLTMLIEDLLDVTKITS 709

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712
           G++  H    + ++ + E +  +Q    +  ++   +       I +D   V Q+ +N++
Sbjct: 710 GRLQFHQTWFNFNQMMQEVVEDLQRTTAKHTLIEDFNADTE---IYSDKDRVGQVLINLI 766

Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           +NAI ++P   +III T    N EV + V+D G+G+   +++K  + F ++   ++    
Sbjct: 767 TNAIKYSPDSDEIIIRTAIE-NNEVQVSVQDFGIGIAQDKIDKVFEQFYRVSGDKEHTFP 825

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           G GLGL ++  ++    GK ++ S   KG+      P+
Sbjct: 826 GLGLGLYISSEIIKREGGKIWVDSVEGKGSKFCFSLPI 863



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/248 (11%), Positives = 80/248 (32%), Gaps = 13/248 (5%)

Query: 329 CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388
            P+  +V     +   N + L +      + +        L   P+L      K +    
Sbjct: 28  LPVGLYVGREMVISVVNDTILKIWGKD--ESVIGKTYREAL---PELEGQPFFKLLDDVY 82

Query: 389 SDRTCIAASARLHTIQWNRE-NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
           +      A   +  +  N E       F          +         +  D  + ++++
Sbjct: 83  TTGIPYHAKEDVCYLMVNGELRRYYFNFAFKPLKTAEGKIWGILNTGTDVTDLVLMRKQL 142

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI-LRKPFTVFLEQNTP 506
           E    +    L+A   G   ++     ++ +    +LFG+P + +   +     +  +  
Sbjct: 143 EEAETRTNFALDAAGMGTWDLDLINNSVTCDNRCKELFGFPKDGLVRYEDLLSHMHPDDI 202

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDIS 562
           + ++  +   ++  +++         T   KL  +R   +     +     ++ T+ DI+
Sbjct: 203 ARVDIAVMNAINPQVKE--NYDVTYRTVGYKLRWVRCKGRAYFDDNNKAYRFAGTVIDIT 260

Query: 563 EWKQEKNK 570
                +++
Sbjct: 261 PEINTRDE 268


>gi|281208514|gb|EFA82690.1| histidine kinase [Polysphondylium pallidum PN500]
          Length = 1105

 Score =  327 bits (838), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 96/354 (27%), Positives = 167/354 (47%), Gaps = 22/354 (6%)

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL--EQNTPSVMNHYLTEILSLDL 521
           G+     +G+++  N A+  + GY  +D+ +      L        +    L E+ +   
Sbjct: 433 GVMFSTLKGLVMDANDALLSIIGYSRQDLEQGKVDWMLITPPEYFEISARALQELKAKRW 492

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH-DISEWKQEKNKLSHAKKIAEK 580
            Q +EK      K  K + + I    +  S    +T   D+S ++Q +         A K
Sbjct: 493 CQPIEKAYF--HKNGKKVPILITAAMVDGSDEQCITFVFDLSRYRQAEES-------AIK 543

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            +  KS F+A +SHE+RTP   I+G ++++ +    P       + A  I RS + ++++
Sbjct: 544 ATKLKSQFIANISHELRTPCHGILGMTQLLLDSGLTPN----QRDSAETIKRSIDGLINL 599

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF---ANNIPRI 697
           +ND+LD SKIE+GK+ L      L   V E ++L    AN+K I +       +   P +
Sbjct: 600 INDILDFSKIEAGKLTLEIVEFELISIVEEVLNLQGELANKKGIDLIFIIGRQSPVPPML 659

Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQI-IISTTHTSNEEV--ILRVRDTGVGMTNYELE 754
             D R ++Q+ +N++ NA+ FT SG  +  IST + S ++V     V+DTG+G+ +   E
Sbjct: 660 YGDSRFIRQVLINLVHNALKFTESGHVVLEISTEYESGDQVSLRFSVKDTGIGIPDSVSE 719

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           +  +PF Q+  S   +  GTGLGL + + +V    G     S   KG+      
Sbjct: 720 QLFQPFSQVDGSSSRKYGGTGLGLSICRDLVGLMGGNISYESKVGKGSCFWFSL 773


>gi|219851553|ref|YP_002465985.1| multi-sensor signal transduction histidine kinase [Methanosphaerula
            palustris E1-9c]
 gi|219545812|gb|ACL16262.1| multi-sensor signal transduction histidine kinase [Methanosphaerula
            palustris E1-9c]
          Length = 1267

 Score =  327 bits (838), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 119/784 (15%), Positives = 233/784 (29%), Gaps = 87/784 (11%)

Query: 86   TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
             W  D    +   +      IG  A  +IG  L  +      +P   I     R      
Sbjct: 507  VW--DPAFRITRFNHAFELLIGRKAADVIGQPLELLFPKKFAEPVLEIIRKTTRGERMEV 564

Query: 146  KTTLWPIEGTNLYVPIDLAALPIYSRNREF---SGFRGFGIVHVNRVDNDPRALGKRLDK 202
                   +   +   +   +  I+  + E    +  +G  I    R +        RL  
Sbjct: 565  VEIPILHQNGEIRT-VLWNSAAIFGSDGETVLSTIAQGQDITERKRTEEALHEAHLRLTH 623

Query: 203  KFSHLH------EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256
               +        + +   +    E   +F         R  +++      Y    D + +
Sbjct: 624  HIENSPLAVVEFDAQFRVTRWSDEAEKVFGWTMAEVMGRTIDEI---PWVYEEDVDRVAS 680

Query: 257  EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
                ++  +          +  +    T + Y   L++ + E    LS     +     +
Sbjct: 681  ISADMMNGKAPRNKHTNRNYRKDGAVITCEWYNSALRDETGELVSILSQVLDVTERDRAE 740

Query: 317  EGE---------------------------------------NLTPETVDKCPIPFFVYS 337
                                                            +     P  V+ 
Sbjct: 741  ADLLEKNQELSELNEELTATQEELRQSIDELTTMEHELRETGQYLENLIQYANAPIIVWD 800

Query: 338  -HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA 396
                +   N +F LL   K+ D I     L  L               ++ +++      
Sbjct: 801  PAFRITRFNHAFELLIGRKAADVIGQP--LELLFPKKFAEPVLE----IIRKTNDGERME 854

Query: 397  SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
               +  +  N E    +                      +    +  +  +     Q   
Sbjct: 855  VVEIPILHQNGEVRTVLWNSAAIFGADGETVQSTIAQGQDITKRKWAEEALRQSEEQYRM 914

Query: 457  ILEATSDGIAI----INREG-----IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
            +    ++G  I     + +        L  N A  +  G    +   +     L  N   
Sbjct: 915  LFNTLTEGFCIIEMLFDADERPIDYRFLEINPAFERQTGL--HEAQGR-LMRDLAPNHEE 971

Query: 508  VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQE 567
                    I         E          +   +       P S   ++  +DI+E KQ 
Sbjct: 972  HWFEIYGTIALTGEPVRFENEAKALN---RWYEVSAYRVGGPESRRVAILFNDITERKQA 1028

Query: 568  KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
            +  L       +  +     F    SH+++ PL  +  FS++++ Q  G L +    E+ 
Sbjct: 1029 EEVLKTIADNLKASNQELEQFAYIASHDLKEPLRMVTCFSQILERQYKGQL-DADADEFI 1087

Query: 628  NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
             YI      +  ++NDLL  S+I  G   +  E V +  A+ EAIS + +   E+   I 
Sbjct: 1088 GYIVDGALRMEALINDLLLYSRINQGMRPV--ERVDMKHAIEEAISNLIIPIRERNARIT 1145

Query: 688  TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG--QIIISTTHTSNEEVILRVRDTG 745
                  +P I  DL  + Q+  N++ NA+ + P     +I I+   T        V+D G
Sbjct: 1146 R---GAMPSIQGDLSQMVQLFQNLIGNAMKYCPEEREPEIWINAERTGKGW-TFSVKDNG 1201

Query: 746  VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
            +G+     E+    F ++    +    GTG+GL + K +V+ + G+ ++ S    G+   
Sbjct: 1202 LGIDPAYHEQIFMIFRRLH--TKAEYPGTGIGLAVVKRIVERHGGRIWVESEEGSGSTFL 1259

Query: 806  IIFP 809
               P
Sbjct: 1260 FTIP 1263



 Score =  115 bits (287), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 61/582 (10%), Positives = 145/582 (24%), Gaps = 97/582 (16%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCD-VSDILHIDPNNH-IGDLLKRQNTWYGKTTL 149
            G L  ++    +  G  A ++  M     ++    +D     + +L +       +   
Sbjct: 46  DGRLGIVNHAFEELTGYTADELQKMDWTATLTPPEWLDVERKNLEELHRTGKPVRYEKEY 105

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG------------ 197
              +GT   V I+L    +  +      +  F  +         R +             
Sbjct: 106 IKKDGT--RVAIELLVHLVTDKEGNPQYYYSF--ITDITEQKRNREILSLSNRVLHSAEE 161

Query: 198 -KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK------------------- 237
              L           + ++  +     I  +Q   P+L                      
Sbjct: 162 HHTLQPLLEEYIRTLQEYTGCDSIGVRILDEQGNIPYLAYAGFSRDFYEQENPLSVRTDH 221

Query: 238 ----NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQED------------------- 274
               N +   T+          +      T   ++  ++E                    
Sbjct: 222 CICINVIEGTTDPSLPFYTAGGSFMINATTKFRATESDEEKEKTRNTCTMVGYESVALIP 281

Query: 275 ---FHTINLNQYTKKQYFGTLQNNSKESFEYLSHR-----NHPSLSAYFDEGENLTPETV 326
                 I    +      G +        E +++                + E      +
Sbjct: 282 IRKGDQIMGLLHLADHQEGMISAEKVRVLEQVAYALGASIVRVQTEEALRKQEKTAQAIL 341

Query: 327 DKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
                  +++ +   +  ANP+ L+    K   ++        +      +    I+ V+
Sbjct: 342 AAAKESIWLFGTDDTILMANPTALVRLGGKDTGEVIGHQYSEFMTSELAQARRARIEEVI 401

Query: 386 LYRSDRTCIAASARLHTIQW--------NRENSLAMTFIPFEKANQFPENMP-------- 429
             R         A    I             +S+A          Q  E +         
Sbjct: 402 SSRRSVQFEDIRAGTIFIHTFCPVFDEAGAVSSIAAFSRDITGIRQADEELLKKNEGLHI 461

Query: 430 --------QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
                   Q  +     +    + ++      L ++++  +  I + +    I   N A 
Sbjct: 462 LNEELTATQEELRQSIDELTTMEHELRETGQYLENLIQYANAPIIVWDPAFRITRFNHAF 521

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
             L G    D++ +P  +   +     +   + +    +  + +E   L    E + +  
Sbjct: 522 ELLIGRKAADVIGQPLELLFPKKFAEPVLEIIRKTTRGERMEVVEIPILHQNGEIRTVLW 581

Query: 542 RIIIKKLPFSSCYSLTM---HDISEWKQEKNKLSHAKKIAEK 580
                          T+    DI+E K+ +  L  A      
Sbjct: 582 NSAAIFGSDGETVLSTIAQGQDITERKRTEEALHEAHLRLTH 623



 Score =  112 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 35/365 (9%), Positives = 108/365 (29%), Gaps = 29/365 (7%)

Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
            +    +                E+    N   +   +     Q   ++S + L      
Sbjct: 427 DEAGAVSSIAAFSRDITGIRQADEELLKKNEGLHILNEELTATQEELRQSIDEL-----T 481

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
           ++     E        +     P  V+     +   N +F LL   K+ D I     L  
Sbjct: 482 TMEHELRETGQYLENLIQYANAPIIVWDPAFRITRFNHAFELLIGRKAADVIGQP--LEL 539

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
           L               ++ ++ R        +  +  N E    +        +     +
Sbjct: 540 LFPKKFAEPVLE----IIRKTTRGERMEVVEIPILHQNGEIRTVLWNSAAIFGSDGETVL 595

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
                  +  + +  +  +    ++L   +E +   +   + +  +   +    K+FG+ 
Sbjct: 596 STIAQGQDITERKRTEEALHEAHLRLTHHIENSPLAVVEFDAQFRVTRWSDEAEKVFGWT 655

Query: 489 VEDILRKPFT--VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
           + +++ +      ++ +     +     ++++    +  +       K+  +++      
Sbjct: 656 MAEVMGRTIDEIPWVYEEDVDRVASISADMMNGKAPRN-KHTNRNYRKDGAVITCEWYNS 714

Query: 547 KLPFSSCYSLTM----HDISEWKQEKNKLSHAKKIAEKESSHKS----------DFLARV 592
            L   +   +++     D++E  + +  L    +   + +   +          D L  +
Sbjct: 715 ALRDETGELVSILSQVLDVTERDRAEADLLEKNQELSELNEELTATQEELRQSIDELTTM 774

Query: 593 SHEIR 597
            HE+R
Sbjct: 775 EHELR 779



 Score = 67.4 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 52/146 (35%), Gaps = 6/146 (4%)

Query: 444 KRKMEIEVMQ---LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF-TV 499
           +R +   + +   L  IL+ +S    +   +G +   N A  +L GY  +++ +  +   
Sbjct: 16  ERALLESLERNTFLSDILDRSSQPFGVGYLDGRLGIVNHAFEELTGYTADELQKMDWTAT 75

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--YSLT 557
                   V    L E+         EK  +        + L + +      +   Y   
Sbjct: 76  LTPPEWLDVERKNLEELHRTGKPVRYEKEYIKKDGTRVAIELLVHLVTDKEGNPQYYYSF 135

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESS 583
           + DI+E K+ +  LS + ++      
Sbjct: 136 ITDITEQKRNREILSLSNRVLHSAEE 161


>gi|239908296|ref|YP_002955037.1| putative chemotaxis CheB/CheR fusion protein [Desulfovibrio
            magneticus RS-1]
 gi|239798162|dbj|BAH77151.1| putative chemotaxis CheB/CheR fusion protein [Desulfovibrio
            magneticus RS-1]
          Length = 1516

 Score =  327 bits (838), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 105/632 (16%), Positives = 223/632 (35%), Gaps = 33/632 (5%)

Query: 194  RALGKRLDKKFSHLHEIKKGHSSVEKEK-YDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD 252
            + L +  +   + L   + G   ++ +     F+         + + V    ++ A++  
Sbjct: 749  KELRELNEDHDNLLRSTEVGTLFLDDKLCIRKFNPAITKSFKLLPHDVGRPVDHIAYQFS 808

Query: 253  VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN--HPS 310
                    L     +    + +    +       Q     +++S      L+  +     
Sbjct: 809  GQAEMLQDLRDVLSTGNMIEREIQANDEE--WLLQRVLPFKSDSGIKGVVLTFTDISKIK 866

Query: 311  LSAYFDEGENLTPETVDKCPIPFFVYS-----HGNLFYANPSFLLLTKYKSVDDIEIAGG 365
                      L  E     P   F Y+          + +     L   +   ++  A  
Sbjct: 867  AFELERNKAKLLKELASSVPGMVFQYASSPVGTSGFTFISDGASSLLGSELASELITASR 926

Query: 366  LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
            +S +     + + + +             +     H ++   +N   +      K     
Sbjct: 927  MSCM-----VYEADLVNFDQALIEATNSNSILDCEHRVKSEGDNEKWLHTRCTPKTLHDG 981

Query: 426  ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
                 NG+  +  + +I   ++        +IL      I     +      N       
Sbjct: 982  TVF-WNGVSVDITERKIAAAQVSKAAEFYLTILNRAPALIWRAGLDAKCDWFNATWLSFT 1040

Query: 486  GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
            G  +   L   +   +             +       Q  E        + +   +    
Sbjct: 1041 GRDISQELGDGWADGVHPEDLQHCLDTYKKSFIAR--QFFEMEYRMRRHDGEYRWIVDFG 1098

Query: 546  KKL----PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
                        Y    +DI++ +Q    L  A+  AE+ +  KS+FLA +SHEIRTPL 
Sbjct: 1099 CPFKNINGEFGGYIGFCYDITDRRQATLDLELARFNAEEANRTKSEFLANMSHEIRTPLN 1158

Query: 602  AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
             ++G  +++++       +    EY+     S   +  +++D+LD+S++E+GK+ +   P
Sbjct: 1159 GVLGMLQLLQSTSL----DVEQKEYSIAAVDSCIRLTRLLSDILDLSRVEAGKLGIQAVP 1214

Query: 662  VSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTP 720
              L E V+    L +  A E  I +      +IP R++ D   ++Q+  N++ NA+ FT 
Sbjct: 1215 FDLSETVNVVNELFKTQAIESGITLDFHIDQDIPKRLIGDAPRLQQVLCNLVGNALKFTH 1274

Query: 721  SGGQIIISTTHTSNEE-----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
            +G +I +S+    + +     ++  + DTG+G+ + +++    PF Q+      R +G G
Sbjct: 1275 AG-KIAVSSHLLPSSDPKRISLMFSISDTGIGIPHDKIDLLFTPFTQVSEGYTRRHQGAG 1333

Query: 776  LGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
            LGL + K +V    G   I S   +GT +   
Sbjct: 1334 LGLSICKHLVTLMGGNISISSVLGQGTTVNFS 1365



 Score = 60.0 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 64/471 (13%), Positives = 120/471 (25%), Gaps = 60/471 (12%)

Query: 113  MIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPI----EGTNLYVPIDLAALPI 168
            + G    DV D++  D    +G  L R  +   +     +    +G +  V + +  L  
Sbjct: 578  IAGRAERDVIDMVEGDLKLALGAALHRAASENTRIVFKHVKIAMQGGHELVDLAVECL-- 635

Query: 169  YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228
                                   D +   +     F     I       EK   +     
Sbjct: 636  ----------------------TDDKLTQRHYHVTFLPPSSITVSAIENEKCGTETAFLP 673

Query: 229  SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288
            +     R+      L        + L+     L T+ E      E+    N    +  + 
Sbjct: 674  TDEVWRRIAELEGDLQ----TTRENLQATIEELQTTNEELQATNEEMLAANEELQSTNEE 729

Query: 289  FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSF 348
              ++             +N        D    L    V       F+     +   NP+ 
Sbjct: 730  LHSVNEELYTVNAEFEKKNKELRELNEDHDNLLRSTEVGTL----FLDDKLCIRKFNPAI 785

Query: 349  LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
                K    D       ++           +    +            +     IQ N E
Sbjct: 786  TKSFKLLPHDVGRPVDHIAYQFSGQAEMLQDLRDVLS---------TGNMIEREIQANDE 836

Query: 409  NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI- 467
              L    +PF+  +             +    +I   ++E    +L   L ++  G+   
Sbjct: 837  EWLLQRVLPFKSDSG---IKGVVLTFTDIS--KIKAFELERNKAKLLKELASSVPGMVFQ 891

Query: 468  -----INREGIILSTNRAVSKLFG--YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520
                 +   G     +   S L G     E I     +  + +      +  L E  + +
Sbjct: 892  YASSPVGTSG-FTFISDGASSLLGSELASELITASRMSCMVYEADLVNFDQALIEATNSN 950

Query: 521  LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS-LTMHDISEWKQEKNK 570
                 E         EK L  R   K L   + +      DI+E K    +
Sbjct: 951  SILDCEHRVKSEGDNEKWLHTRCTPKTLHDGTVFWNGVSVDITERKIAAAQ 1001



 Score = 48.5 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/153 (11%), Positives = 35/153 (22%), Gaps = 5/153 (3%)

Query: 74   FVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNH 132
            F    + R     W           +       G    + +G    D      +    + 
Sbjct: 1008 FYLTILNRAPALIWRAGLDAKCDWFNATWLSFTGRDISQELGDGWADGVHPEDLQHCLDT 1067

Query: 133  IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192
                   +  +  +  +   +G   Y  I     P  + N EF G+ GF   +       
Sbjct: 1068 YKKSFIARQFFEMEYRMRRHDGE--YRWIVDFGCPFKNINGEFGGYIGF--CYDITDRRQ 1123

Query: 193  PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF 225
                 +         +  K    +    +    
Sbjct: 1124 ATLDLELARFNAEEANRTKSEFLANMSHEIRTP 1156


>gi|77464934|ref|YP_354438.1| cytoplasmic sensor hybrid histidine kinase [Rhodobacter sphaeroides
           2.4.1]
 gi|77389352|gb|ABA80537.1| cytoplasmic sensor hybrid histidine kinase [Rhodobacter sphaeroides
           2.4.1]
          Length = 849

 Score =  327 bits (838), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 123/604 (20%), Positives = 231/604 (38%), Gaps = 57/604 (9%)

Query: 235 RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES-SLPEQEDFHTINLNQYTKKQYFGTLQ 293
            ++ K++         + +L+ ++  L  + E  ++  +     I   +   K      +
Sbjct: 2   DIEQKLAKERRARLAAERLLEYKQRELFAANEKLAIHARALSDQIIEQRAVVKTALSEAE 61

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSF---- 348
               ++  +LS              E    +++D     F V+  G  L  AN ++    
Sbjct: 62  KLKGQNSRFLSEL--ERAHTAAVMAERRLWDSIDAIEDGFAVFDAGQRLVAANEAYRCHF 119

Query: 349 --LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
             L +    ++ D+        L+D      ++  + ++    +        R  T QW 
Sbjct: 120 EGLEVRPGMALADLLQLATTHGLIDLRGEPADHWRQRMIRRWDEDPVEPEIVRRCTGQW- 178

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
                          N+   +     +  +  +             +L + ++A  DG  
Sbjct: 179 -----------LRLVNRRARDGDMVSLLIDITEQM-----------RLRAAIDAIPDGFV 216

Query: 467 IINREGIILSTNRAVSKLF---------GYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
           + +R   ++  N     ++         G P E+ILR                 +L + L
Sbjct: 217 LFDRAERLVLCNDRYRAIYPRSAEALRPGAPFEEILRHGLAHGQFPEAAGREEEWLADRL 276

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI 577
           +                + + L +   I+             DI+E K+++  L  A+  
Sbjct: 277 AAFRHLGGAAE--QQLDDGRWLRV---IEHETPDGGRVGLGVDITELKRQQAALESARAA 331

Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
           AE  S  KS FLA +SHEIRTP+  I+G ++++               ++  I  SG  +
Sbjct: 332 AEAASRAKSAFLANMSHEIRTPMNGIVGMADLLCETVL----TEDQRLFSETIRSSGEAL 387

Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-R 696
           L I+ND+LD SKIE+ ++ LH EP  L+  + E   L+Q  A  K I +   F   +P R
Sbjct: 388 LVIINDILDYSKIEANRLTLHPEPFDLERTIHEVAMLLQPKARAKGIDLLIDFDLFLPTR 447

Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT---SNEEVILRVRDTGVGMTNYEL 753
            + D   ++Q+  N++ NA+ FT +G  +I            ++ + V DTG+G+    L
Sbjct: 448 FVGDPGRLRQVLTNLIGNAVKFTAAGHVLIRVVGLEVAPGRHDLRVTVEDTGIGIAPEHL 507

Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL--IEIIFPLY 811
           +     F QI      R EGTGLGL + + +++   G  ++ S P +G+     +  P  
Sbjct: 508 DHVFGEFNQIEAEATRRFEGTGLGLAITRRLIELMQGAVWVESEPGRGSCFGFRLTLPAA 567

Query: 812 DTSH 815
           D   
Sbjct: 568 DDEA 571


>gi|257093802|ref|YP_003167443.1| multi-sensor hybrid histidine kinase [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257046326|gb|ACV35514.1| multi-sensor hybrid histidine kinase [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 835

 Score =  327 bits (838), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 116/564 (20%), Positives = 197/564 (34%), Gaps = 26/564 (4%)

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
            S+               T                  +  R   +      +GE    + 
Sbjct: 147 GSARGLLPQSPVAEAEAMTLALIAQISSLAVVAMAAKIVVRARAAARESLRQGEKRLQQI 206

Query: 326 VDKCPIPFFVYSH----GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
           VD  P       +        + N  F         D I     +  L           +
Sbjct: 207 VDGLPASIAYADYTGSVARYSFVNRRFAERFGKAPAD-IAGRAVVDVL----GEEVYRDV 261

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
            P +        +        +      +            +            +D + +
Sbjct: 262 APHLQRVLQGEAVEYD---RALPTADGTTRYDRVYLVPDWAEDGAVQGAYIFGIDDSERK 318

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL---RKPFT 498
                +E    +L         G    + E   L+ +  V ++ G+         R  + 
Sbjct: 319 RALLALEGSEAKLAEAQAMAHVGNWEFDLETDRLTWSDEVYRICGHEPRSFTPFFRTDYV 378

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY---S 555
                     +   L ++L+    Q LE   +    +E+ + +R  +     +      +
Sbjct: 379 AATPVEDRPKLAEALAQVLATGAAQRLEHRVVRPDGDERTVEVRAQVLCTDLAGRISTLT 438

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
             + D+SE KQ + +L  AK+ AE  S  KS FLA +SHEIRTP+  +IG    +     
Sbjct: 439 GVVQDVSERKQIERELIAAKEAAEAASKAKSAFLANMSHEIRTPMNGVIG----VAELLL 494

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
                 R   YA  I RSG  +L +++D+LD+SKIE+G++ L      L E V E   L 
Sbjct: 495 TEALEERARHYAETIQRSGRALLGVLDDVLDLSKIEAGRLELESVRFDLPELVREMSDLF 554

Query: 676 QLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
              A  K   +  S A  +P  +  DL  ++Q+ LN++SNA+ F+  G  I I   H  +
Sbjct: 555 GEAARAKGARLVVSVAPAVPRWVEGDLVRLRQVLLNLVSNAVKFSARG-IIEIELRHDGD 613

Query: 735 EE--VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
            +  +   VRD G+G+   +  +    F Q       R  GTGLGL +A+ +V       
Sbjct: 614 GDGALRFAVRDQGLGIAPDKQARIFDAFAQADQGTTRRFGGTGLGLSIARQLVRLMGSDI 673

Query: 793 YIFSTPAKGTLIEIIFPLYDTSHP 816
            + ST  +G+       L + + P
Sbjct: 674 GLHSTLGEGSCFWFCLRLPEVAPP 697



 Score = 57.7 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 28/238 (11%), Positives = 70/238 (29%), Gaps = 20/238 (8%)

Query: 94  YLKEISEELPKTIGNYAFKMIGMRLCDVS-DILHIDPNNHIGDLLKRQNTWYGKTTLWPI 152
               ++    +  G     + G  + DV  + ++ D   H+  +L+ +   Y +      
Sbjct: 225 RYSFVNRRFAERFGKAPADIAGRAVVDVLGEEVYRDVAPHLQRVLQGEAVEYDRALP-TA 283

Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212
           +GT  Y  + L  +P ++ +    G   FGI      D++ +     L+   + L E + 
Sbjct: 284 DGTTRYDRVYL--VPDWAEDGAVQGAYIFGI-----DDSERKRALLALEGSEAKLAEAQA 336

Query: 213 GHSSVEKE----------KYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
                  E            +++      P        +        +D     E    +
Sbjct: 337 MAHVGNWEFDLETDRLTWSDEVYRICGHEPRSFTPFFRTDYVAATPVEDRPKLAEALAQV 396

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTL-QNNSKESFEYLSHRNHPSLSAYFDEGE 319
            +  ++   +      + ++ T +     L  + +             S     +   
Sbjct: 397 LATGAAQRLEHRVVRPDGDERTVEVRAQVLCTDLAGRISTLTGVVQDVSERKQIEREL 454


>gi|227552547|ref|ZP_03982596.1| histidine kinase [Enterococcus faecium TX1330]
 gi|257888222|ref|ZP_05667875.1| histidine kinase [Enterococcus faecium 1,141,733]
 gi|257896890|ref|ZP_05676543.1| histidine kinase [Enterococcus faecium Com12]
 gi|293378480|ref|ZP_06624643.1| PAS domain S-box [Enterococcus faecium PC4.1]
 gi|227178296|gb|EEI59268.1| histidine kinase [Enterococcus faecium TX1330]
 gi|257824276|gb|EEV51208.1| histidine kinase [Enterococcus faecium 1,141,733]
 gi|257833455|gb|EEV59876.1| histidine kinase [Enterococcus faecium Com12]
 gi|292642809|gb|EFF60956.1| PAS domain S-box [Enterococcus faecium PC4.1]
          Length = 611

 Score =  327 bits (838), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 86/418 (20%), Positives = 175/418 (41%), Gaps = 31/418 (7%)

Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR-KMEIEVMQL 454
              R   I+  R       +    K +   E         +  +     +  ME E  +L
Sbjct: 209 GEMREQAIRIARG-----DYSRKVKVHGQDELGQLADTFNQLAERIEEAQDTMEAERNRL 263

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
            S+L   +DG+   +R G +++ N     L     E+ + +     L+          L 
Sbjct: 264 DSVLSHMTDGVIATDRRGKVITINDMAVSLLDVKNEEAIGQSILTLLDIEEEYT----LR 319

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLS 572
           ++L       L++ T     ++ +L +   + +      S     +HD++E ++ + +  
Sbjct: 320 KLLEDPNEMVLDRSTSTLESDQMILRVDFSMIRRESGFISGLVAVLHDVTEQEKTERE-- 377

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
                       + +F++ VSHE+RTPLT++  + E +    +          +      
Sbjct: 378 ------------RREFVSNVSHELRTPLTSMRSYIEALSEGAW--KDEEVAPNFLKVTLD 423

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA--NEKRILIRTSF 690
             + ++ ++NDLL++S++++G   L  E V+ +E V+  +    +     EK   IR  F
Sbjct: 424 ETDRMIRMINDLLNLSRMDTGNTQLQLEYVNFNELVNFVLDRFDMMVGNQEKNYKIRREF 483

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
                 +  D   + Q+  NI++NAI ++P GG I       ++  VIL + D G+G+  
Sbjct: 484 TQRDLWVEVDTDKIIQVVDNIMNNAIKYSPDGGTITCRL-LETHNNVILSITDQGLGIPK 542

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            +L +  + F ++  ++     GTGLGL +++ ++ A+ G  +  S   KG+   I  
Sbjct: 543 KDLNRVFERFYRVDKARARAQGGTGLGLAISREVIKAHRGAIWAESKEGKGSTFYISL 600


>gi|257062146|ref|YP_003140034.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp.
            PCC 8802]
 gi|256592312|gb|ACV03199.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp.
            PCC 8802]
          Length = 1166

 Score =  327 bits (838), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 103/667 (15%), Positives = 211/667 (31%), Gaps = 58/667 (8%)

Query: 185  HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL---RMKNKVS 241
               R         +  + K   L +      SV  E+  +         +     +   +
Sbjct: 510  RNERSRQQAEKEREVSENKLKALLKYSSDIVSVFDEQGQLIYTSPAVEKIYGFSPEELQN 569

Query: 242  SLTEYYAHKDDVLKTEKY--PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
              T    H DD  +       LL   ++++     + T N      +        N    
Sbjct: 570  KNTFELIHPDDRSEVRNAFCQLLEDPKNTIRVHYRYQTKNQRFIWIETVASNQLQNPNIQ 629

Query: 300  FEYLSHRN---HPSLSAYFDEGENLTPETVDKCPIPFFVYS-------HGNLFYANPSFL 349
               ++ R+              E    +  +     F++              Y +P++ 
Sbjct: 630  GIVVNSRDISHRKESEEALRVSEERFRQLAENIREVFWMIDVSTVNPTEQRTLYVSPAYQ 689

Query: 350  LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS--DRTCIAASARLHTIQWNR 407
             +  +K  +  E             +   +      +     D+  I      + I    
Sbjct: 690  QVWGHKPEELYENP--------RQWIQAVHPDDFERISHEFFDKLLITGFDHEYRIIRPD 741

Query: 408  ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME------------------I 449
                 +    F   NQ  E     G+  +    +  + ++                    
Sbjct: 742  GTIRWIRDRGFPIKNQVGEFCRVTGLAEDITKQKQTEEEIRGLNAALAEQNRQLEQRVAQ 801

Query: 450  EVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYP-VEDILRKPFTVFLEQNTPS 507
               +L  +L    D + ++ R+   +   N+  ++  G+    ++  K           +
Sbjct: 802  RTAELEMLLNTLPDFVFVVERDTMKLSFCNQMFAQGIGFTNRSEVEGKTIFECFPTEMAN 861

Query: 508  VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY--SLTMHDISEWK 565
                   ++ +      +E+       + +      +  + P    Y    T  D++E  
Sbjct: 862  YFAQQNEQVFNSGEILHVEEKVCLPNGD-RYFDTYKVPLRTPQGEIYALLGTGRDMTELV 920

Query: 566  QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG--PLGNPRY 623
              K  L       E  +     F   VSH++R PL  I GF   +K Q        +P+ 
Sbjct: 921  NTKKVLMQRTTQLELANQELDSFCYSVSHDLRAPLRHIHGFVNALKQQLMTNNTFEDPKV 980

Query: 624  IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            + Y + I+ S   +  +++ LL +S++  G+  L    V L+  V  AI+L+      K 
Sbjct: 981  LHYLDVIENSSQKMAHLIDGLLTLSRV--GRRELVLHTVDLNAVVKTAINLLSPL-ENKT 1037

Query: 684  ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
              I+      +P +  D   ++Q+  N+L NA+ F+     I I      +    + V D
Sbjct: 1038 HTIKFEV-GKLPTVQGDNALLQQVFTNLLDNALKFSRDRNPISIKINTLEDG--TIFVSD 1094

Query: 744  TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
             GVG      ++    F ++ +       GTG+GL + + ++  + G  +  S   KGT 
Sbjct: 1095 NGVGFDMEYADQLFGAFQRLHSQAT--FPGTGIGLSIVQRIIHRHGGHIWAESQVDKGTT 1152

Query: 804  IEIIFPL 810
                 PL
Sbjct: 1153 FYFTLPL 1159



 Score = 86.2 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/293 (11%), Positives = 80/293 (27%), Gaps = 19/293 (6%)

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364
                      +E        ++  P  FF  +  +             Y S +      
Sbjct: 62  ITLQQDQKFLLEEKREELQTILEILPDLFFRMNSDSTILDYRGESKSELYVSPELFLGKP 121

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
            +  L   P+         +   +   +    +        N E       +PF      
Sbjct: 122 MIEIL---PEPVAQAWRDAI--AQILGSNTLVTLEYQLSTSNAEQYYEARLVPFAHQ--- 173

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE----GIILSTNRA 480
                   I       +  +  ++     L +I+      + + + +    G +L  N+A
Sbjct: 174 ----QIIAIVRNISQQKQTEINLKKSQDFLQTIINYLPVALFVKDGKPEKFGQLLLVNKA 229

Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
             ++ G     ++ K        +  +       E  +  + + + +  + S    K + 
Sbjct: 230 CEEMMGLVSSQVVGKTGHDLFPADQANFYEQKDREAFANGVPEDIPEEPIDSYNAGKKIL 289

Query: 541 LRIII---KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
             I +    +            DI+  K+ +  L  +  I    S  +S F+A
Sbjct: 290 HTIKVPLYDQNNDPEYLVCISEDITRQKKAEIDLEKSHNILRTISLAQSQFIA 342



 Score = 68.5 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 36/404 (8%), Positives = 89/404 (22%), Gaps = 51/404 (12%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN-HIGDLLKRQNTWYGKTT 148
           D  G L   S  + K  G    ++      ++               LL+  +       
Sbjct: 544 DEQGQLIYTSPAVEKIYGFSPEELQNKNTFELIHPDDRSEVRNAFCQLLE--DPKNTIRV 601

Query: 149 LWPIEGTNLY-VPIDLAALPIYSRNREFSGFRGFGI-VHVNRVDNDPRALGKRLDKKFSH 206
            +  +  N   + I+  A        +    +G  +         +     +  +++F  
Sbjct: 602 HYRYQTKNQRFIWIETVASNQL----QNPNIQGIVVNSRDISHRKESEEALRVSEERFRQ 657

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
           L E  +    +        ++Q          +V        +++     +       E 
Sbjct: 658 LAENIREVFWMIDVSTVNPTEQRTLYVSPAYQQVWGHKPEELYENPRQWIQAVHPDDFER 717

Query: 267 -----------SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS----- 310
                      +    +      +      +     ++N   E           +     
Sbjct: 718 ISHEFFDKLLITGFDHEYRIIRPDGTIRWIRDRGFPIKNQVGEFCRVTGLAEDITKQKQT 777

Query: 311 -----------------LSAYFDEGENLTPETVDKCPIPFFVYSHGN--LFYANPSFLLL 351
                            L     +        ++  P   FV       L + N  F   
Sbjct: 778 EEEIRGLNAALAEQNRQLEQRVAQRTAELEMLLNTLPDFVFVVERDTMKLSFCNQMFAQG 837

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411
             + +  ++E                    + V         +    ++     N +   
Sbjct: 838 IGFTNRSEVEGKTIFECFPTEMANYFAQQNEQVFNS---GEILHVEEKVC--LPNGDRYF 892

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
               +P        E     G   +  +    K+ +     QL 
Sbjct: 893 DTYKVPLRTP--QGEIYALLGTGRDMTELVNTKKVLMQRTTQLE 934


>gi|196031997|ref|ZP_03099411.1| sporulation kinase [Bacillus cereus W]
 gi|228946726|ref|ZP_04109033.1| hypothetical protein bthur0007_28640 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|195994748|gb|EDX58702.1| sporulation kinase [Bacillus cereus W]
 gi|228812943|gb|EEM59257.1| hypothetical protein bthur0007_28640 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
          Length = 801

 Score =  327 bits (838), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 103/533 (19%), Positives = 209/533 (39%), Gaps = 47/533 (8%)

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVD-----KCPIPFFVYSHGNLFYANPSFLLL 351
            +  E +      +     +   + T E ++                G +  AN ++  +
Sbjct: 294 GQVIEVVGSTVDITERKKVESELSATKELLESFIKHNLDAITISDREGYILQANKAYEKI 353

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ-WNRENS 410
             + S + I            P + D    + +   +   T  +   RL T++  N  + 
Sbjct: 354 FGWSSQEVIGKRL--------PCVPDFLMEESLKNIQKILTGESVVTRLETVRQRNDGSL 405

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK-------MEIEVMQLCSILEATSD 463
           L ++       +     +  + I  +  + +  +R+       +    M+  +++E  +D
Sbjct: 406 LDVSLTVSPILDVRGNVIALSAICRDISERKQAERERHRLHQQLRDSEMKYRALIEQATD 465

Query: 464 GIAII-----NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
            + ++     N     +  N    + FGY  E++L   F+  + Q++  ++   L +I  
Sbjct: 466 AVYVVELNEENAPSRFIEVNPVGCRRFGYSREELLSLSFSNIVPQDSQMIVR-LLEKIKK 524

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578
                TL+   +  T +       + +  L     +     DI+E  + +  L  ++K+A
Sbjct: 525 GQTSFTLQDEYVFPTGKVITTEFSVRVFNLNGKKVFLSISRDITERLKTEELLRKSEKLA 584

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
                        ++HEI  PLTA+ GF +++K+       N     Y N +      + 
Sbjct: 585 VV-----GQLATVMAHEINNPLTAMKGFMQLLKSTE-----NENNQGYINIVSSEIERIE 634

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
            I  + + ++K +  K+  +     +   + + + L+Q  A    I  R      IP I 
Sbjct: 635 SITTEFMAVAKPQVVKIQPN----DISVLMDQVLMLLQPQAMMNNIKFRIDLNPGIPLIS 690

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
            +   +KQ+ +NIL NAI   P GG+I+I      N +V +R  D G G+    +    +
Sbjct: 691 CEGNQLKQVFVNILKNAIESMPMGGEILIQLNILDNNQVSIRFIDQGCGIPKERIPYLGE 750

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
           PF        I+ EG GLGL +   +++ + GK +I S   KGT +E+  P++
Sbjct: 751 PFY------SIKEEGIGLGLMICYKIIETHQGKIFIESEVNKGTTVEVTLPIF 797



 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 43/286 (15%), Positives = 90/286 (31%), Gaps = 21/286 (7%)

Query: 313 AYFDEGENLTPETVDKCPIPFF----VYSHGNLFYANPSFLLLTKYKSVDDIEI-AGGLS 367
                 +    +TV +     F    V  H      +  F     + S   +      + 
Sbjct: 186 RELKRSKQELTDTVHELQGGIFKFKKVGKHFIHTLCDGQFYYQNGFYSEQVVGKSLRTID 245

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
             +  P L          L   +   I        + W  + ++ +         +  + 
Sbjct: 246 ASIIPPHLVPQLMKY--YLQAWEGKEIIFE-----LPWPNDKTIILI--ALRPIKRNGQV 296

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
           +   G   +  + +  + ++      L S ++   D I I +REG IL  N+A  K+FG+
Sbjct: 297 IEVVGSTVDITERKKVESELSATKELLESFIKHNLDAITISDREGYILQANKAYEKIFGW 356

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
             ++++ K     +           + +IL           T+    +  LL + + +  
Sbjct: 357 SSQEVIGKRL-PCVPDFLMEESLKNIQKIL-TGESVVTRLETVRQRNDGSLLDVSLTVSP 414

Query: 548 LPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
           +               DISE KQ + +     +   ++S  K   L
Sbjct: 415 ILDVRGNVIALSAICRDISERKQAERERHRLHQQL-RDSEMKYRAL 459



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 38/286 (13%), Positives = 83/286 (29%), Gaps = 23/286 (8%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG-KTT 148
           D  GY+ + ++   K  G  + ++IG RL  V D L  +   +I  +L  ++     +T 
Sbjct: 338 DREGYILQANKAYEKIFGWSSQEVIGKRLPCVPDFLMEESLKNIQKILTGESVVTRLETV 397

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +G+ L V + ++  PI              I               RL ++     
Sbjct: 398 RQRNDGSLLDVSLTVS--PILDVRGNVIALS--AICRDISERKQAERERHRLHQQLRDSE 453

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLR--------------MKNKVSSLTEY-YAHKDDV 253
              +       +   +          R               + ++ SL+      +D  
Sbjct: 454 MKYRALIEQATDAVYVVELNEENAPSRFIEVNPVGCRRFGYSREELLSLSFSNIVPQDSQ 513

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
           +       +   ++S   Q+++        T +               +LS     +   
Sbjct: 514 MIVRLLEKIKKGQTSFTLQDEYVFPTGKVITTEFSVRVFN--LNGKKVFLSISRDITERL 571

Query: 314 YFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVD 358
             +E    + +      +     +   N   A   F+ L K    +
Sbjct: 572 KTEELLRKSEKLAVVGQLATVMAHEINNPLTAMKGFMQLLKSTENE 617


>gi|327192798|gb|EGE59726.1| putative two-component sensor histidine kinase protein [Rhizobium
           etli CNPAF512]
          Length = 861

 Score =  327 bits (838), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 139/723 (19%), Positives = 261/723 (36%), Gaps = 41/723 (5%)

Query: 107 GNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAAL 166
           GN   +++G    +       +       L  R  +   K      +G       D+   
Sbjct: 149 GNARPELLGQLPAETGAPQDGEFLAFGLWLKSRSASDLEKAIDRLRDGAQ---SFDMVVE 205

Query: 167 PIYSR----NREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKY 222
            I           SG R F  V      N+ RA    L  +   L        ++     
Sbjct: 206 TIRDEILEAQGRVSGGRAF--VRFV-ALNNLRAELAELRIERDRLMTSISAFQTMLDAID 262

Query: 223 DIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL--------KTEKYPLLTSEESSLPEQED 274
               Q+ P   L   N+              +           +  +  +     P  + 
Sbjct: 263 MPAWQRDPAGRLTWVNQAYGDAVEARSPQQAINEGREMLTTVARERIRATTTPESPFHDT 322

Query: 275 FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF 334
             T+     T              +   +   +  ++ A  D       ET+D    P  
Sbjct: 323 ISTVVHGNRTFFDVVDVTL-PGGSAGMAVDVSDIEAVRAELDRTLKSHAETLDHLATPVA 381

Query: 335 VYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393
           ++     L + N +F+ L +   +  +E     S LL+  + +     +           
Sbjct: 382 IFDGERRLQFYNQAFVALWEL-DIAFLEGRPDNSELLERLRAAKKLPDQLNWKSWK---- 436

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
               A L   +     S  +  +P  +  +        G      +    +  +E     
Sbjct: 437 ---EAALSVYRALDTQS-DLWHLPNGQTLRVFATAHPQGGATWVFENLTEQVDLETRYNT 492

Query: 454 LCSI----LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
           L  +    ++  S+G+A+   +G I  +N A   L+G    +         L +      
Sbjct: 493 LVKVQGETIDHLSEGVAVFGPDGRIRLSNPAFRALWGITEAEAKPGTHIRALGEACAPSY 552

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLS---LRIIIKKLPFSSCYSLTMHDISEWKQ 566
           +         +L  + +          +L S   L   +  LP +    LT  ++++  +
Sbjct: 553 DRPDGWKTFAELITSFDDERRSGQGTLELFSGLVLDYAVIPLPNAQ-TMLTFVNMTDSVR 611

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
            +  L+   +   K    K+DF+  VS+E+R+PLT IIGF+++++ Q  GPL N R  EY
Sbjct: 612 AERALTEKNEALRKADELKNDFVQHVSYELRSPLTNIIGFTDLLRTQGVGPL-NERQAEY 670

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
            ++I  S +++L +VND+LD++ +++G M L++  + L++ + +    +     E  + +
Sbjct: 671 IDHISTSSSVLLTLVNDILDLATVDAGIMRLNYAEIDLNDLLDDVSMQIADRLQESGVAL 730

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
             +    +  I+AD + +KQI L +LSNA +F+P G  I +       + V   VRD G 
Sbjct: 731 EITAPAYLGSIVADPQRLKQILLKLLSNAANFSPEGSSISLECRREGTDFV-FSVRDRGP 789

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G++   +      F     S +    G GLGL +  + V  + G   I S P KGT +  
Sbjct: 790 GISPDMIATVFDRFATGAKSGKR--GGAGLGLSIVDSFVSLHHGDVTIDSEPGKGTTVVC 847

Query: 807 IFP 809
             P
Sbjct: 848 RIP 850



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/375 (10%), Positives = 89/375 (23%), Gaps = 16/375 (4%)

Query: 87  WNIDAHGYLKEISEELPKTI-GNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
           W  D  G L  +++     +      + I      ++ +                 + + 
Sbjct: 266 WQRDPAGRLTWVNQAYGDAVEARSPQQAINEGREMLTTV-----ARERIRATTTPESPFH 320

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVH-VNRVDNDPRALGKRLDKKF 204
            T    + G   +  +    LP                V           A         
Sbjct: 321 DTISTVVHGNRTFFDVVDVTLP-GGSAGMAVDVSDIEAVRAELDRTLKSHAETLDHLATP 379

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM--KNKVSSLTEYYAHKDDVLKTEKYPLL 262
             + + ++      +    ++         R      +  L       D +         
Sbjct: 380 VAIFDGERRLQFYNQAFVALWELDIAFLEGRPDNSELLERLRAAKKLPDQLNWKSWKEAA 439

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
            S   +L  Q D   +   Q  +       Q     ++ + +      L   ++    + 
Sbjct: 440 LSVYRALDTQSDLWHLPNGQTLRVFATAHPQG--GATWVFENLTEQVDLETRYNTLVKVQ 497

Query: 323 PETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
            ET+D       V+   G +  +NP+F  L      +     G     L        +  
Sbjct: 498 GETIDHLSEGVAVFGPDGRIRLSNPAFRALWGITEAEA--KPGTHIRALGEACAPSYDRP 555

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
                +    T      R         + L + +      N        N  +    +  
Sbjct: 556 DGWKTFAELITSFDDERRSGQGTLELFSGLVLDYAVIPLPNAQTMLTFVNMTDSVRAERA 615

Query: 442 INKR-KMEIEVMQLC 455
           + ++ +   +  +L 
Sbjct: 616 LTEKNEALRKADELK 630


>gi|223936675|ref|ZP_03628585.1| multi-sensor signal transduction histidine kinase [bacterium
           Ellin514]
 gi|223894526|gb|EEF60977.1| multi-sensor signal transduction histidine kinase [bacterium
           Ellin514]
          Length = 759

 Score =  327 bits (838), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 86/649 (13%), Positives = 221/649 (34%), Gaps = 43/649 (6%)

Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR---MKNKVSSLTE 245
                 A  ++ +++   L E    ++    +     +  +            +V     
Sbjct: 121 RRKQAEAALRKSEEQLRALIENVTDYAIYMLDIEGRVASWNAGAERMKGYQAEEVIGKPF 180

Query: 246 YYAHKDDVLKTEKYP--LLTSEESSLPEQEDF-HTINLNQYTKKQYFGTLQNNSKESFEY 302
                 +  ++      L  S      + + +    +  ++        +++ S +   +
Sbjct: 181 SVFFSGEDAESRIPESLLRRSPIEGTTKHQGWCVRKDGTRFCASWSITPVRDGSGKINGF 240

Query: 303 LSHRNH----PSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVD 358
            +                + E      V+  P    V+S G + ++N +   +   K + 
Sbjct: 241 STVTRDVTEQAKAEEALQKSEERYRLLVEFSPCGVLVHSGGRVIFSNSTAAKMLGAKDLQ 300

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
            +            P        +   L+      +     +  + ++      M     
Sbjct: 301 QMLGRSIRD--FIHPDCWAAVEKRIESLHA--GKIVPFLEEIW-VGFDGRPVDVMVGATP 355

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINREGIILST 477
               +  EN     I  +  + + ++  +     +    +E+  D  I +++++G + S 
Sbjct: 356 LVFEKDFENPVIQVIALDISELKRSEEDLRKSEERFRLAVESVKDYAIYMLDKDGRVTSW 415

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
           N    ++ G   +++L K      E +          E+    +   ++       K+  
Sbjct: 416 NEGAERITGLGADEVLSKVVNHC-EPDNKKAKKEAAKELERAAMEGRIQNEGWCQRKDGS 474

Query: 538 LLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEK-----------ES 582
                  +  +  ++     +     D++E KQ + +++      E+            +
Sbjct: 475 SYYAIWTVTAVKDAADTITGFLKVARDVTERKQHEEQVARWNTELEQRVAERTAQLEAAN 534

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
                F   VSH++R PL  I GF ++++      L +    ++   I  S   +  +++
Sbjct: 535 KELEAFSYSVSHDLRAPLRHIDGFVDILQTTALEKL-DEESRQHLQTIADSAKQMAKLID 593

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702
           DLL  S++   ++ ++   V+L   V +A   +Q     + I        ++P +  D  
Sbjct: 594 DLLGFSRM--SRVKMNKRQVNLATLVQDAARHLQGDMKGRAIEWAI---GDLPTVEGDPE 648

Query: 703 SVKQIALNILSNAIHFT--PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760
            ++Q+ +N++ NA+ ++      ++ I +    ++ V+  VRD GVG      +K    F
Sbjct: 649 MLRQVFMNLIDNALKYSRNQKKARVEIGSFPEEDDNVVF-VRDNGVGFDMRYADKLFGVF 707

Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            ++   +    EGTG+GL   + ++  + G+ +       G       P
Sbjct: 708 QRLH--RAAEFEGTGVGLANVRRIIHRHGGRTWAEGEINAGATFYFTLP 754



 Score =  114 bits (285), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 43/409 (10%), Positives = 117/409 (28%), Gaps = 20/409 (4%)

Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD 251
           +  A    L  +     +I      V      +   Q   P L + +      +  A   
Sbjct: 3   EDEARDVTLANRALKEGDIPFSLKRVVTRSAFLNELQKNTPDLIISDHALPDFDGSAALQ 62

Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLN---QYTKKQYFGTLQNNSKESFEYLSHRNH 308
              +           SSL E+     + +       K +         +   E       
Sbjct: 63  LAREKSPDIPFIFFTSSLGEENILDNLKMGASDYVLKHRINDLAPAVRRVLREKEERIRR 122

Query: 309 PSLSAYFDEGENLTPETVDKCPI--PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
               A   + E      ++       + +   G +   N     +  Y++ + I      
Sbjct: 123 KQAEAALRKSEEQLRALIENVTDYAIYMLDIEGRVASWNAGAERMKGYQAEEVIGKP--F 180

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
           S                +     + T                     ++      +   +
Sbjct: 181 SVFFSGEDAESRIPESLLRRSPIEGTT----KHQGWCVRKDGTRFCASWSITPVRDGSGK 236

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
               + +  +  +    +  ++    +   ++E +  G+ +    G ++ +N   +K+ G
Sbjct: 237 INGFSTVTRDVTEQAKAEEALQKSEERYRLLVEFSPCGVLVH-SGGRVIFSNSTAAKMLG 295

Query: 487 Y-PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
              ++ +L +    F+  +  + +   +  + +  +   LE+I +G   + + + + +  
Sbjct: 296 AKDLQQMLGRSIRDFIHPDCWAAVEKRIESLHAGKIVPFLEEIWVG--FDGRPVDVMVGA 353

Query: 546 KKLPFSSCY-----SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
             L F   +      +   DISE K+ +  L  +++          D+ 
Sbjct: 354 TPLVFEKDFENPVIQVIALDISELKRSEEDLRKSEERFRLAVESVKDYA 402



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/397 (11%), Positives = 110/397 (27%), Gaps = 30/397 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + +D  G +   +    +  G  A ++IG            D  + I + L R++   G
Sbjct: 148 IYMLDIEGRVASWNAGAERMKGYQAEEVIGKPFS--VFFSGEDAESRIPESLLRRSPIEG 205

Query: 146 KTTL--WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
            T    W +           +  P+   + + +GF    +              ++ +++
Sbjct: 206 TTKHQGWCVRKDGTRFCASWSITPVRDGSGKINGFS--TVTRDVTEQAKAEEALQKSEER 263

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV----SSLTEYYAHKDDVLKTEKY 259
           +  L E       V      IFS  +    L  K+       S+ ++          ++ 
Sbjct: 264 YRLLVEFSPCGVLVHSGGRVIFSNSTAAKMLGAKDLQQMLGRSIRDFIHPDCWAAVEKRI 323

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL-QNNSKESFEYLSHRNHPSLSAYFDEG 318
             L + +     +E +   +            L      E+          S     +E 
Sbjct: 324 ESLHAGKIVPFLEEIWVGFDGRPVDVMVGATPLVFEKDFENPVIQVIALDISELKRSEED 383

Query: 319 ENLTPETVDKCPIPF------FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
              + E                +   G +   N     +T   + + +     ++     
Sbjct: 384 LRKSEERFRLAVESVKDYAIYMLDKDGRVTSWNEGAERITGLGADEVLSKV--VNHCEPD 441

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
            K +   A K +     +             + +  +  A+        +          
Sbjct: 442 NKKAKKEAAKELERAAMEGR---IQNEGWCQRKDGSSYYAIW-TVTAVKDAADTITGFLK 497

Query: 433 IEPEDVDTRINKR-------KMEIEVMQLCSILEATS 462
           +  +  + + ++        ++E  V +  + LEA +
Sbjct: 498 VARDVTERKQHEEQVARWNTELEQRVAERTAQLEAAN 534


>gi|75675393|ref|YP_317814.1| Signal transduction histidine kinase [Nitrobacter winogradskyi
           Nb-255]
 gi|74420263|gb|ABA04462.1| signal transduction histidine kinase [Nitrobacter winogradskyi
           Nb-255]
          Length = 779

 Score =  327 bits (838), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 135/652 (20%), Positives = 252/652 (38%), Gaps = 54/652 (8%)

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
           D++      +        +    I   QSP         V+ +          ++     
Sbjct: 129 DQRVLARVPVGAASGESSRMLELISITQSPILRGAAPASVADIVLLDGSSVLAVQRVVRS 188

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
           LL            +        T     G +      +F + S R         D   +
Sbjct: 189 LLGQVTVIQEVNAAWRPDTALSITLSATTGFVVLILGFAFHWQSTRAREG-DLINDAVRS 247

Query: 321 LTPETVDKCPIPFFVYSH--GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
                +++     + +    G + + + S   +   +S  D+   G +S+L+++  +   
Sbjct: 248 RIDTALNRGRCGLWDWDLSRGRI-FWSQSMFTMLGMESRSDLLTFGEVSSLVNSDDIDLF 306

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
                ++             +   ++ +  + + +        N         GI  +  
Sbjct: 307 EVADQLI----SGKIGHID-QSFRMRHSSGHWIWLRVRCELSQNANG-GAHLIGIAVDVT 360

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI-LRKPF 497
           + +    K     ++L   +E+  +   + + +  ++  N    +L   P   + +  P+
Sbjct: 361 EQKSLAEKSIEADLRLRDAIESIPEAFVLWDADDRLVLCNSHFQRLHKLPDSAVAVGTPY 420

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT 557
              +E      +                         +   L +    ++      Y   
Sbjct: 421 ETVVEVGRMPEIRA---RHSETGTVTLKAHTFDVQLADGNWLHVS---ERRTKDGGYVSV 474

Query: 558 MHDISEWKQEKNKLSHA-----------------------------------KKIAEKES 582
             DI+  K+ + KL                                      K  AE  +
Sbjct: 475 GTDITRIKEHEQKLVENDLRLRATVIDLKRTQATLEQQAIKLADLAQKYADEKNRAEDAN 534

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
             KS FLA +SHE+RTPL AIIGFSE++ N  FG LG+ +Y EY   I  SG  +L+++N
Sbjct: 535 RAKSKFLANMSHELRTPLNAIIGFSEIMSNGMFGTLGSTKYSEYCRDILTSGQYLLEVIN 594

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702
           D+LD+SKIE+G+ NL  E + L   + E++ +V    ++K +       ++I  I+AD R
Sbjct: 595 DVLDMSKIEAGRTNLDMETLDLTGVLDESLRVVSGRTSDKGLTFDVRSDDDI-SIIADRR 653

Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
           +VKQI +N+LSNA+ FTP+ G+I+  +    N  V L + DTG+G+  + L +  KPF Q
Sbjct: 654 AVKQIMVNLLSNAVKFTPASGRIMARSKVFEN-SVTLTIADTGIGIAPHALRRLGKPFEQ 712

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           + +       G+GLGL +AK++V+ + G   I S P  GT++ +  P +  +
Sbjct: 713 VESQLTKTHAGSGLGLAIAKSLVNLHSGSMRIRSKPGAGTVVRVTLPRHRQA 764


>gi|328956406|ref|YP_004373792.1| two-component sensor histidine kinase [Carnobacterium sp. 17-4]
 gi|328672730|gb|AEB28776.1| two-component sensor histidine kinase [Carnobacterium sp. 17-4]
          Length = 614

 Score =  327 bits (838), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 88/425 (20%), Positives = 173/425 (40%), Gaps = 45/425 (10%)

Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
                TIQ    +         +  ++    +    I          +   E E  +L S
Sbjct: 213 EMTQQTIQMADGDYSGQ----VKVYSKDELGILSMAINDLSTKVEEAQETTESERRRLNS 268

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT-- 514
           +L   +DG+   +R G+I+  N    ++     E  L       L+ +    +   L   
Sbjct: 269 VLTHMTDGVIATDRRGVIVIINDKAMEMLNISQEMALGVSILKVLKIDKEYTLRKLLENE 328

Query: 515 -----EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN 569
                +  + ++  TL        +E   +            S     +HD+++ ++  N
Sbjct: 329 DDMYFDFSNDEIPVTLRGEFTLIQRETGFI------------SGIVCVLHDVTKQEKIDN 376

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +              + +F++ VSHE+RTPLT++  + E + +  +         ++   
Sbjct: 377 E--------------RKEFVSNVSHELRTPLTSMRSYLEALLDGAW--KDPEIAPQFLKV 420

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE-----KRI 684
                + ++ ++ DLLD+S+++SGK  L  E ++++E     I   ++         K  
Sbjct: 421 TQEETDRMIRMIKDLLDLSRMDSGKGTLDLEYLNVNELFDHVIKRFEMMIQSSDESSKDF 480

Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744
            I+ +F +    +  D   + Q+  NI++NAI ++P GG I       +N+ V+L + D 
Sbjct: 481 SIKRNFTDRQLWVEVDADKMIQVLDNIMNNAIKYSPDGGTITCGL-VETNDSVVLSISDE 539

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G+   +L      F ++  ++     GTGLGL ++K +V  + GK +  ST  KGT  
Sbjct: 540 GLGIPKRDLANVFDRFFRVDKARARSMGGTGLGLAISKEVVHQHKGKIWAESTEGKGTTF 599

Query: 805 EIIFP 809
            I  P
Sbjct: 600 YISLP 604


>gi|257885425|ref|ZP_05665078.1| histidine kinase [Enterococcus faecium 1,231,501]
 gi|257821281|gb|EEV48411.1| histidine kinase [Enterococcus faecium 1,231,501]
          Length = 611

 Score =  327 bits (838), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 86/418 (20%), Positives = 175/418 (41%), Gaps = 31/418 (7%)

Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR-KMEIEVMQL 454
              R   I+  R       +    K +   E         +  +     +  ME E  +L
Sbjct: 209 GEMREQAIRIARG-----DYSRKVKVHGQDELGQLADTFNQLAERIEEAQDTMEAERNRL 263

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
            S+L   +DG+   +R G +++ N     L     E+ + +     L+          L 
Sbjct: 264 DSVLSHMTDGVIATDRRGKVITINDMAISLLDIKNEEAIGQSILTLLDIEEEYT----LR 319

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLS 572
           ++L       L++ T     ++ +L +   + +      S     +HD++E ++ + +  
Sbjct: 320 KLLEDPNEMVLDRSTSTLESDQMILRVDFSMIRRESGFISGLVAVLHDVTEQEKTERE-- 377

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
                       + +F++ VSHE+RTPLT++  + E +    +          +      
Sbjct: 378 ------------RREFVSNVSHELRTPLTSMRSYIEALSEGAW--KDEEVAPNFLKVTLD 423

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA--NEKRILIRTSF 690
             + ++ ++NDLL++S++++G   L  E V+ +E V+  +    +     EK   IR  F
Sbjct: 424 ETDRMIRMINDLLNLSRMDTGNTQLQLEYVNFNELVNFVLDRFDMMVGNQEKNYKIRREF 483

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
                 +  D   + Q+  NI++NAI ++P GG I       ++  VIL + D G+G+  
Sbjct: 484 TQRDLWVEVDTDKIIQVVDNIMNNAIKYSPDGGTITCRL-LETHNNVILSITDQGLGIPK 542

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            +L +  + F ++  ++     GTGLGL +++ ++ A+ G  +  S   KG+   I  
Sbjct: 543 KDLNRVFERFYRVDKARARAQGGTGLGLAISREVIKAHRGAIWAESKEGKGSTFYISL 600


>gi|329851151|ref|ZP_08265908.1| sensory box protein [Asticcacaulis biprosthecum C19]
 gi|328839997|gb|EGF89569.1| sensory box protein [Asticcacaulis biprosthecum C19]
          Length = 680

 Score =  327 bits (838), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 81/404 (20%), Positives = 165/404 (40%), Gaps = 14/404 (3%)

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
                    +  + +  ++  R+++    +L  + E    G   I+ +      +R V  
Sbjct: 141 AATAASILSLRRDSLARKVAIRQLQETQNKLELMEEVAGVGYWHIDVKKQDAFWSRGVYA 200

Query: 484 LFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
           + G   E               +    +   + + +       L         + +   +
Sbjct: 201 IHGLDRESFAPDLTNAIDLFHADDRDDVRRCVVDAMQNGA--DLHFECRLVRGDGEERIV 258

Query: 542 RIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
                               + DI++  + +  L  AK+ AE     KSDFL+ +SHEIR
Sbjct: 259 YARGGVERDDEGQPEFIFGILEDITDQSRYEETLRTAKRDAEAHQQAKSDFLSNMSHEIR 318

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TPLT I+G++ ++K     P        Y   I+++G  +L ++ D+LD SK+E+G++ L
Sbjct: 319 TPLTTILGYANLLKGVGDLPKD---ARHYIGRINKAGEALLSLITDVLDFSKLEAGQVTL 375

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAI 716
             +P  L +   + +       + + I I   + +  P  +  D   ++Q+  N++ NA 
Sbjct: 376 DPQPTDLRQLAGDVVDQFMAMTDTRNITIGFDYDDASPVWLEIDDVRIRQVLYNLIGNAC 435

Query: 717 HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
            FT  G  + ++   +   ++ ++V+D+G G+T  +  +    F Q+ NS   +  G+GL
Sbjct: 436 KFTHDG-YVAVTLAVSD-GQLRVKVKDSGPGLTPEQRSRLFTRFNQVDNSINRKYGGSGL 493

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820
           GL +   +V    G+  + S   +G+      P+  T  P   +
Sbjct: 494 GLSICHEIVKLMQGRIGVESEAGQGSTFWFEIPVVPTEAPAPVV 537


>gi|150021705|ref|YP_001307059.1| PAS/PAC sensor signal transduction histidine kinase [Thermosipho
           melanesiensis BI429]
 gi|149794226|gb|ABR31674.1| PAS/PAC sensor signal transduction histidine kinase [Thermosipho
           melanesiensis BI429]
          Length = 423

 Score =  327 bits (838), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 81/375 (21%), Positives = 159/375 (42%), Gaps = 35/375 (9%)

Query: 447 MEIEVMQLC-------SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
           +E  + +L        +IL    D I I  ++G I   N     +       +  +    
Sbjct: 65  LEENIYELELSLKNHLTILNNIVDPIIISKKDGTITFANMEARNI---TRPGVEGRKLYE 121

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP-FSSCYSLTM 558
             E    + M              T  +I L    E+K   L+I+   L   +  Y + +
Sbjct: 122 VFEDYYVNQMFEE----AQNKKEITSGEINLFVNGEKKYYELKIVPVTLEQNNERYIIIL 177

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
           HD+++ +  +              + + +F++ VSHE+RTPLT+I G++E +        
Sbjct: 178 HDVTQERILE--------------NARKEFISNVSHELRTPLTSIHGYAEALLEDNLD-- 221

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
                  +   I+     +  ++NDLLD+ K+ESG     FE ++  E +    ++++  
Sbjct: 222 DKELIRRFLTIIESEAARMTRLINDLLDLEKLESGNTQFIFEKINFTEILEHVRNIIEPL 281

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT---PSGGQIIISTTHTSNE 735
             +  + +    + +   ++ D   + Q+ LN++ NA+ +T     G + ++   +  N 
Sbjct: 282 TKDYNVDVEF-VSPDKIELIGDKDRLTQMVLNLVDNAVKYTSLKEKGEKKVLVEAYKDNN 340

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            V L V+DTGVG+     +K  + F ++  ++  +  GTGLGL + K +V+ + G     
Sbjct: 341 HVKLIVKDTGVGIPEKAQKKLFERFYRVDKARSRKMGGTGLGLSIVKTIVEKHNGTIEFT 400

Query: 796 STPAKGTLIEIIFPL 810
           S    GT   +  P+
Sbjct: 401 SKEGVGTKFIVTLPV 415


>gi|222053368|ref|YP_002535730.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. FRC-32]
 gi|221562657|gb|ACM18629.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. FRC-32]
          Length = 946

 Score =  327 bits (838), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 116/756 (15%), Positives = 246/756 (32%), Gaps = 67/756 (8%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL-HIDPNNHIGDLLKRQNTWYGKTT 148
           D    ++  +    K  G  A +++G  L  + +       +  IG  + +  +   + T
Sbjct: 101 DEEKTIRSFNPAAEKIFGYLAQEVLGCNLQLLFESACGSGGSEGIGAAISKDTSINREYT 160

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH-- 206
               +G++ ++ I ++ + +         +   GIV          A  + + +      
Sbjct: 161 GKRRDGSHCHLDISISKVRVGDS------WMHMGIVRDLSEQKRAEAEYQAILRTAMDGF 214

Query: 207 -LHEIKKGHSSVEK---EKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
            + + K G   V     +      Q+     +     V +  E  A  + +    +    
Sbjct: 215 WITDEKGGFLDVNDTYCQMTGYSRQELLAMQIGDVEAVLTAEEIKARMESIRNPGRIRFE 274

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
           T          D              F     +     E L             + E   
Sbjct: 275 TRHRRKDGSSFDVEVSANYLPAGGGRFFAFLRDITCRNEMLGT---------LAKSEEKY 325

Query: 323 PETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
               D   +    +     +  AN               + +       + P        
Sbjct: 326 RTLADNVTVGVTLISPKMEIISANRQSRQWYPELDE---KYSPICYKTFNNPPRDSICPD 382

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
            P +   +D         + T  W    +     +     +             E    +
Sbjct: 383 CPTVKTLADGG---IHEAVVTNPWKG-VARHFRIVSSPIKDNAGNITGVIESVEEVTALK 438

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
            ++ +    + +L + LEAT+DGI  ++  G I+S N+ + ++   P   +    F + +
Sbjct: 439 RSEDEYSEALSRLTATLEATADGILAVDLNGRIVSYNQKLVQMLKIPGHILETDDFYLLI 498

Query: 502 E--QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTM 558
               +     +  +      D  +    +     K+ ++       +++  +      + 
Sbjct: 499 ANIYSQLKGHDKLVRAEFEGDADRDFHDLLEF--KDGRVFERFCRPQRIGDTIVGRVSSF 556

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            DI+  ++ + +L HA+K+             +V+H+    LTAIIG+   +   +    
Sbjct: 557 RDITGERKMEAQLRHAQKM-----EAIGTLTGKVAHDFNNMLTAIIGYC-HLSQMQIH-- 608

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
            N   ++    I  +      +   LL+ S+    K   + + + L++ V +  +     
Sbjct: 609 SNDPLMQNIRQIITAAERAAGLTQSLLEYSR----KTPSNPQAMELNQVVRQV-NGFLSR 663

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT------ 732
              + I + TS A+    I+AD   ++Q+ +N+ +NA       G++II T  T      
Sbjct: 664 LIGEDIELVTSPADEPLVIIADAGQIEQVLMNLATNARDAMSGKGRLIIGTATTRIGEDF 723

Query: 733 --------SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
                        ++ V DTG GM     +K  +PF          G GTGLGL +   +
Sbjct: 724 LQSHGFGNPGTYALVSVSDTGSGMDEDTCDKIFEPFFTTKP----VGNGTGLGLSIVYGI 779

Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820
           V  + G   + S    GT   +  PL   + PH+ +
Sbjct: 780 VKQHNGYVTVESKKGCGTTFRVYLPLTGQA-PHEKV 814



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/399 (10%), Positives = 110/399 (27%), Gaps = 35/399 (8%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK 146
           W  D  G   ++++   +  G    +++ M++ DV  +L  +      + ++       +
Sbjct: 215 WITDEKGGFLDVNDTYCQMTGYSRQELLAMQIGDVEAVLTAEEIKARMESIRNPGRIRFE 274

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
           T     +G++  V +    LP         G R F  +      N+      + ++K+  
Sbjct: 275 TRHRRKDGSSFDVEVSANYLPAG-------GGRFFAFLRDITCRNEMLGTLAKSEEKYRT 327

Query: 207 LHEIKKGHSSVEKEKYDIFSQQS----PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
           L +      ++   K +I S         P L  K        +     D +  +   + 
Sbjct: 328 LADNVTVGVTLISPKMEIISANRQSRQWYPELDEKYSPICYKTFNNPPRDSICPDCPTVK 387

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD----EG 318
           T  +  + E    +         +     +++N+      +      +     +    E 
Sbjct: 388 TLADGGIHEAVVTNPWKGVARHFRIVSSPIKDNAGNITGVIESVEEVTALKRSEDEYSEA 447

Query: 319 ENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
            +    T++        V  +G +   N   + + K                        
Sbjct: 448 LSRLTATLEATADGILAVDLNGRIVSYNQKLVQMLKIP-----GHILETDDFYLLIANIY 502

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
           +       L R++    A       +++           P    +     + +     + 
Sbjct: 503 SQLKGHDKLVRAEFEGDADRDFHDLLEFKDGRVFERFCRPQRIGD---TIVGRVSSFRDI 559

Query: 438 VDTRINKRKMEIEVMQLCSI----------LEATSDGIA 466
              R  + ++     ++ +I                 I 
Sbjct: 560 TGERKMEAQLR-HAQKMEAIGTLTGKVAHDFNNMLTAII 597



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/148 (20%), Positives = 58/148 (39%), Gaps = 7/148 (4%)

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
             ++     ++L    DG+ + + E  I S N A  K+FGY  +++L     +  E    
Sbjct: 79  ALMQEALAENVLGQVVDGVVLFDEEKTIRSFNPAAEKIFGYLAQEVLGCNLQLLFESACG 138

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY--SLTMHDISEW 564
           S  +  +   +S D    + +   G  ++     L I I K+     +     + D+SE 
Sbjct: 139 SGGSEGIGAAISKDTS--INREYTGKRRDGSHCHLDISISKVRVGDSWMHMGIVRDLSEQ 196

Query: 565 KQEKNKLSHAKKIAEKE---SSHKSDFL 589
           K+ + +     + A      +  K  FL
Sbjct: 197 KRAEAEYQAILRTAMDGFWITDEKGGFL 224


>gi|258623855|ref|ZP_05718809.1| Aerobic respiration control sensor protein ArcB [Vibrio mimicus
           VM603]
 gi|258583844|gb|EEW08639.1| Aerobic respiration control sensor protein ArcB [Vibrio mimicus
           VM603]
          Length = 785

 Score =  327 bits (838), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 85/400 (21%), Positives = 165/400 (41%), Gaps = 19/400 (4%)

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
               +         +E E       + ++      L S ++A+ D I   N +G     N
Sbjct: 122 RIKAEEAREEAMLDLENEVYQREKTQLELAERTALLRSFIDASPDLIYYRNAKGEFSGCN 181

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
           RA+ +L G    +++         +     +     ++ + +   T E+        +  
Sbjct: 182 RAMEELTGKRESELVGLTPWDVYRKEIAQSIVETDQQVFNHNTAITYEQWLEYPDGRKSF 241

Query: 539 LSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
             LR +                 DI+E K+ +  L       EK S  K+ F++ +SHE+
Sbjct: 242 FELRKVPFYSKDGRHLGLVGFGRDITERKRHEESL-------EKASRDKTTFISTISHEL 294

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTPL  I+G S ++ +            ++   I+ S   + +I ND++D+ K +  K+ 
Sbjct: 295 RTPLNGIVGLSRMLLDTPLSS----EQRKHLQTINVSAVTLGNIFNDIIDMDKFDRRKLE 350

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNA 715
           L    ++ +E V+E   L  L A +K +        ++P  +  D   ++Q+  N++SNA
Sbjct: 351 LFPAALNFEEFVAEIEVLAALMAEQKGLRFDLERLTDLPSLVEVDATRLRQVLWNLISNA 410

Query: 716 IHFTPSGGQI-IISTTH-TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGE 772
           + FT  GG +  +S      + ++ + V DTG+G+   E EK    + Q+   +      
Sbjct: 411 MKFTKEGGVVMTVSAECDEQHADITIEVEDTGIGIPEEEQEKIFAMYYQVKPGKDNLHAV 470

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF--PL 810
           GTG+GL +++ ++    G   + S    G+   +    PL
Sbjct: 471 GTGIGLAVSRQLIKLMGGDISVNSEEGFGSTFTVTIRVPL 510



 Score = 47.7 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 42/311 (13%), Positives = 81/311 (26%), Gaps = 21/311 (6%)

Query: 19  KGNTQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVS---NTNYLDSENTFV 75
           +   Q+L++K   N  +  +  +E    +   +    D   E          L      +
Sbjct: 98  RSRDQELNQKLQQNIVKLNQEIEERIKAEEAREEAMLDLENEVYQREKTQLELAERTALL 157

Query: 76  FDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD 135
              I  +    +  +A G     +  + +  G    +++G+   DV              
Sbjct: 158 RSFIDASPDLIYYRNAKGEFSGCNRAMEELTGKRESELVGLTPWDVYRKEIAQSIVETDQ 217

Query: 136 LLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA 195
            +   NT       W           +L  +P YS++    G  GFG             
Sbjct: 218 QVFNHNTAITYE-QWLEYPDGRKSFFELRKVPFYSKDGRHLGLVGFG--RDITERKRHEE 274

Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY-------- 247
             ++  +  +                    S+      L  + +    T           
Sbjct: 275 SLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDTPLSSEQRKHLQTINVSAVTLGNI 334

Query: 248 ------AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301
                   K D  K E +P   + E  + E E    +   Q   +     L +      E
Sbjct: 335 FNDIIDMDKFDRRKLELFPAALNFEEFVAEIEVLAALMAEQKGLRFDLERLTDL-PSLVE 393

Query: 302 YLSHRNHPSLS 312
             + R    L 
Sbjct: 394 VDATRLRQVLW 404


>gi|89900557|ref|YP_523028.1| multi-sensor hybrid histidine kinase [Rhodoferax ferrireducens
           T118]
 gi|89345294|gb|ABD69497.1| multi-sensor hybrid histidine kinase [Rhodoferax ferrireducens
           T118]
          Length = 1033

 Score =  327 bits (838), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 92/427 (21%), Positives = 169/427 (39%), Gaps = 29/427 (6%)

Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR--KMEIEVM 452
              A +   Q +   S+ +        +     M +          ++     +      
Sbjct: 123 PYEAFVFEFQHHTLISVVIFCADGLIVSLSIGAMRRYFSNYVITVAKLETALEQSRHNEA 182

Query: 453 QL---CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
           +L      L+     +A  +  G I   N     +  Y  +++L     +      P   
Sbjct: 183 ELTYQKYALDQ-HAIVAATDVRGTITYVNDLFCAISQYSRDELLGHNHRLLNSGAHPKEF 241

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWK 565
              +   +S    +  +       K+  L  +   I      S     Y     DI+E K
Sbjct: 242 FEAMYRTISSG--EVWKGDICNRAKDGSLYWVSTTIVPYVNDSGKPIRYVAIRADITERK 299

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           +        K+ A+  +  KS FLA +SHEIRTP+ A++G + ++      P       E
Sbjct: 300 RA-------KEAAQAATLAKSQFLANMSHEIRTPMNAVLGLTRMVLESDLKP----EQRE 348

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
               + +SG  ++ I+ND+LD S+IE+G++ +   P+ ++  + E   L    A EK + 
Sbjct: 349 QLIKVSKSGRALVRIINDILDFSRIEAGRLAIERIPLRVEAVLLEVADLFSAQAEEKGLE 408

Query: 686 IRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILR 740
           +        P +++ D   + Q+  N++ NAI FT  G +I I        +    + + 
Sbjct: 409 LFLDIEPETPLQVIGDPLRLTQVLNNLVGNAIKFTDHG-EIHIGVRVAHYGDATLTLCIN 467

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           VRDTG+GM   ++    + F Q  +S      G+GLGL +AK +V+   G+  + S   +
Sbjct: 468 VRDTGIGMAPEQIGVLFQSFTQADSSTTRNYGGSGLGLTIAKKLVELMGGQITLDSAVGQ 527

Query: 801 GTLIEII 807
           GT +   
Sbjct: 528 GTNVSFS 534



 Score = 44.6 bits (104), Expect = 0.069,   Method: Composition-based stats.
 Identities = 11/113 (9%), Positives = 32/113 (28%), Gaps = 5/113 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147
            D  G +  +++           +++G     ++   H       +   +     W G  
Sbjct: 200 TDVRGTITYVNDLFCAISQYSRDELLGHNHRLLNSGAHPKEFFEAMYRTISSGEVWKGDI 259

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
                +G+  +V   +  +P  + + +    R   I          +   +  
Sbjct: 260 CNRAKDGSLYWVSTTI--VPYVNDSGKPI--RYVAIRADITERKRAKEAAQAA 308


>gi|294828133|ref|NP_712722.2| histidine kinase/response regulator hybrid protein [Leptospira
           interrogans serovar Lai str. 56601]
 gi|293385980|gb|AAN49740.2| histidine kinase response regulator hybrid protein [Leptospira
           interrogans serovar Lai str. 56601]
          Length = 1017

 Score =  327 bits (838), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 114/505 (22%), Positives = 213/505 (42%), Gaps = 24/505 (4%)

Query: 310 SLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
             +    E E      ++      + +  +  L   N  F  + +     +I     L  
Sbjct: 242 EQAGTIAEHEANLNAIIENSEAMIWSIDKNYKLLIFNSQFQNVMQNFYHSEISTGFNLFQ 301

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
               P+++     K           ++               +          N   E  
Sbjct: 302 KELPPEIAKY--WKEFYDRALSGEKVSV---ARKRPNQDGTFIFSELSFQPIRNTEYEIT 356

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
             + I  +  D ++ +        +   + E +S+   + +  G IL  N A  K+    
Sbjct: 357 GVSAISVDITDKKLAE-------EKFRLLFERSSEPHVLYDDFG-ILECNPATLKMLRCS 408

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            + ++     +     T     + L  I       T E +      EE  + + +I   +
Sbjct: 409 DKKLVLGKHPIHFSVETEKEKTNELESIALEKGSYTFEWVYKRFNDEEFSVEVTLIPIII 468

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                +    H+I+E K  ++ L  AK+IAE  S  K+DFLA +SHEIRTPL  +IG   
Sbjct: 469 HQKRVFLSVWHEITERKVYEDSLKRAKEIAEAASKAKTDFLAMMSHEIRTPLNGVIGTVS 528

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
           +++    G   N    EY + I  SG  +L ++ND+LD+S+IESG++ L  +PVS ++  
Sbjct: 529 LLE----GTFLNTEQKEYLDIIKSSGQNLLILLNDILDLSRIESGQLKLEIQPVSPEKLT 584

Query: 669 SEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIII 727
           +E ++L +  A EK +++ +  + N+P  I++D   ++Q+  N++ N+I FT  G +I +
Sbjct: 585 NEVVNLFRPMAEEKGLVVESEVSFNVPNWIISDPYRLRQVLTNLIGNSIKFTEKG-KIHL 643

Query: 728 STTHT----SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
           S            +I  V+DTG+G+   +LE   + F Q+ +S   +  G+GLGL ++K 
Sbjct: 644 SVEAEKFPNDKLRLIFHVKDTGIGIAEEKLELLFRAFSQVDSSTTRKYGGSGLGLTISKK 703

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIF 808
           + +   G+  + S    G+   +  
Sbjct: 704 LAELMKGEITVKSQVNSGSEFSLSI 728



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/281 (10%), Positives = 67/281 (23%), Gaps = 13/281 (4%)

Query: 317 EGENLTPETVDKCPIPFFVYSHGN--LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
           +   L      K      +       +   N +     + ++  +I      S LL    
Sbjct: 116 QDSELRSTIFQKSANAILLLDPDKDLILEINQTASRYFEIQNQSEILNLP-FSNLLAQDF 174

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
                  +   +   +        +    +    N+               +        
Sbjct: 175 THFEYTSRKKKILSGETPSWDLEFKTLRGKKFWGNTSCRMISTHLNKIILVQIKDITEKV 234

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG--YPVEDI 492
                       +      L +I+E +   I  I++   +L  N     +    Y  E  
Sbjct: 235 NTRKSLLEQAGTIAEHEANLNAIIENSEAMIWSIDKNYKLLIFNSQFQNVMQNFYHSEIS 294

Query: 493 LRKP-FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
                F   L          +    LS +      K      ++   +   +  + +  +
Sbjct: 295 TGFNLFQKELPPEIAKYWKEFYDRALSGEKVSVARKR---PNQDGTFIFSELSFQPIRNT 351

Query: 552 S----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
                  S    DI++ K  + K     + + +      DF
Sbjct: 352 EYEITGVSAISVDITDKKLAEEKFRLLFERSSEPHVLYDDF 392


>gi|156741047|ref|YP_001431176.1| multi-sensor signal transduction histidine kinase [Roseiflexus
           castenholzii DSM 13941]
 gi|156232375|gb|ABU57158.1| multi-sensor signal transduction histidine kinase [Roseiflexus
           castenholzii DSM 13941]
          Length = 718

 Score =  327 bits (838), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 105/652 (16%), Positives = 231/652 (35%), Gaps = 57/652 (8%)

Query: 180 GFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK 239
           G+ I   + +  +    G  L     H           +   + +   +    H+  + +
Sbjct: 98  GWSIPWSDDILREVIERGATLQSAARHDIVHYGAPIVWDGRLWGVLELRGSEMHVGNEEQ 157

Query: 240 -VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ----N 294
            +                         E      E             +    L     +
Sbjct: 158 ALIHALTPLLAATIAAGRGDGDTRALTERQQRVIEMVRAELEAPLALGELLTFLLRWALD 217

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKY 354
            +      ++  +           E    + +++               A   +      
Sbjct: 218 ATGAEAGAIALVDRERGELVLHAYEGYGGDPLNR----------DAFGEARRRWSWEVGV 267

Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
                     G +TLL       +       +       I A   L  +  +   S+A  
Sbjct: 268 AGKVA---RTGRATLLRDVSRDPDYRAFAPEVRAELAAPIGADPPLAVLLLDSPRSVAFG 324

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII 474
                  +          +    +   ++ +++      L  +  +  +G+ +++++G +
Sbjct: 325 ESEVAFVDALCH------LAVNPLRRALHYQQLLETSAHLGQVFASMPNGLVLMDQQGRV 378

Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH---YLTEILSLDLRQTLEKITLG 531
           L  N A   ++G   + +    +                  LTE+ +   R   E  +L 
Sbjct: 379 LRHNPAWLMIWGLTPDAMRDPFYIPLDLVPLLLPRMRDPLALTELCAEGQRSPTEVQSLL 438

Query: 532 STKE--EKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
                  + + L     +  F S       + D++  +              +    KS+
Sbjct: 439 VRLNNPHQEVMLLSAPTRDSFGSLTGRLWIVSDVTRER--------------EADRLKSE 484

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           FL+ VSHE+RTPLT+I+G++E++  + F P       E+   +    N +  IV DLL +
Sbjct: 485 FLSIVSHELRTPLTSIMGYTELLLARDFTPG---EQREFVKTVYNEANHLYQIVEDLLGV 541

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707
           +++E+G + L    VSL + +S+  + +    + K   +       +P + AD   V+Q+
Sbjct: 542 TRLEAGNVRLDRWAVSLRQIISDLTAHLSNQISGKH-TMLIDIPPYLPPVYADRDKVRQV 600

Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSN--------EEVILRVRDTGVGMTNYELEKAMKP 759
            +N+++NA+ ++P+GG+I ++ T  ++        + V++ + D G+G+   +L +  + 
Sbjct: 601 LVNLITNAVKYSPNGGEIRLTVTEHADLPPDHPKGQFVLVAISDQGIGIAPEDLPRIWER 660

Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
           F ++ N    R  GTGLGL +AKA+V+ + G+ +  S   +G+      P+ 
Sbjct: 661 FYRVDNGNTRRIGGTGLGLSIAKALVELHGGRIWAESKLNRGSTFSFTLPVA 712


>gi|45657308|ref|YP_001394.1| histidine kinase response regulator hybrid protein [Leptospira
           interrogans serovar Copenhageni str. Fiocruz L1-130]
 gi|45600546|gb|AAS70031.1| histidine kinase response regulator hybrid protein [Leptospira
           interrogans serovar Copenhageni str. Fiocruz L1-130]
          Length = 1017

 Score =  327 bits (838), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 114/505 (22%), Positives = 213/505 (42%), Gaps = 24/505 (4%)

Query: 310 SLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
             +    E E      ++      + +  +  L   N  F  + +     +I     L  
Sbjct: 242 EQAGTIAEHEANLNAIIENSEAMIWSIDKNYKLLIFNSQFQNVMQNFYHSEISTGFNLFQ 301

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
               P+++     K           ++               +          N   E  
Sbjct: 302 KELPPEIAKY--WKEFYDRALSGEKVSV---ARKRPNQDGTFIFSELSFQPIRNTEYEIT 356

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
             + I  +  D ++ +        +   + E +S+   + +  G IL  N A  K+    
Sbjct: 357 GVSAISVDITDKKLAE-------EKFRLLFERSSEPHVLYDDFG-ILECNPATLKMLRCS 408

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            + ++     +     T     + L  I       T E +      EE  + + +I   +
Sbjct: 409 DKKLVLGKHPIHFSVETEKEKTNELESIALEKGSYTFEWVYKRFNDEEFSVEVTLIPIII 468

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                +    H+I+E K  ++ L  AK+IAE  S  K+DFLA +SHEIRTPL  +IG   
Sbjct: 469 HQKRVFLSVWHEITERKVYEDSLKRAKEIAEAASKAKTDFLAMMSHEIRTPLNGVIGTVS 528

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
           +++    G   N    EY + I  SG  +L ++ND+LD+S+IESG++ L  +PVS ++  
Sbjct: 529 LLE----GTFLNTEQKEYLDIIKSSGQNLLILLNDILDLSRIESGQLKLEIQPVSPEKLT 584

Query: 669 SEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIII 727
           +E ++L +  A EK +++ +  + N+P  I++D   ++Q+  N++ N+I FT  G +I +
Sbjct: 585 NEVVNLFRPMAEEKGLVVESEVSFNVPNWIISDPYRLRQVLTNLIGNSIKFTEKG-KIHL 643

Query: 728 STTHT----SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
           S            +I  V+DTG+G+   +LE   + F Q+ +S   +  G+GLGL ++K 
Sbjct: 644 SVEAEKFPNDKLRLIFHVKDTGIGIAEEKLELLFRAFSQVDSSTTRKYGGSGLGLTISKK 703

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIF 808
           + +   G+  + S    G+   +  
Sbjct: 704 LAELMKGEITVKSQVNSGSEFSLSI 728



 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/281 (10%), Positives = 67/281 (23%), Gaps = 13/281 (4%)

Query: 317 EGENLTPETVDKCPIPFFVYSHGN--LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
           +   L      K      +       +   N +     + ++  +I      S LL    
Sbjct: 116 QDSELRSTIFQKSANAILLLDPDKDLILEINQTASRYFEIQNQSEILNLP-FSNLLAQDF 174

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
                  +   +   +        +    +    N+               +        
Sbjct: 175 THFEYTSRKKKILSGETPSWDLEFKTFRGKKFWGNTSCRMISTHLNKIILVQIKDITEKV 234

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG--YPVEDI 492
                       +      L +I+E +   I  I++   +L  N     +    Y  E  
Sbjct: 235 NTRKSLLEQAGTIAEHEANLNAIIENSEAMIWSIDKNYKLLIFNSQFQNVMQNFYHSEIS 294

Query: 493 LRKP-FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
                F   L          +    LS +      K      ++   +   +  + +  +
Sbjct: 295 TGFNLFQKELPPEIAKYWKEFYDRALSGEKVSVARKR---PNQDGTFIFSELSFQPIRNT 351

Query: 552 S----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
                  S    DI++ K  + K     + + +      DF
Sbjct: 352 EYEITGVSAISVDITDKKLAEEKFRLLFERSSEPHVLYDDF 392


>gi|323340910|ref|ZP_08081159.1| sensor histidine kinase VicK [Lactobacillus ruminis ATCC 25644]
 gi|323091572|gb|EFZ34195.1| sensor histidine kinase VicK [Lactobacillus ruminis ATCC 25644]
          Length = 626

 Score =  327 bits (838), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 82/409 (20%), Positives = 158/409 (38%), Gaps = 46/409 (11%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
                          +    V     +   + E  +L S+L   SDG+   +R G I   
Sbjct: 234 VHVYGTDELGQLAQAVNNLSVRVEEAQESSDSERRRLDSVLSHMSDGVIATDRRGNISII 293

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT-------EILSLDLRQTLEKITL 530
           N    +      +D++       L+      M   +        ++      Q L     
Sbjct: 294 NDMACEYLDVESKDVIGTSILDVLKIREMQTMRELIENQDGIIVDMSDAGHDQILNAYFS 353

Query: 531 GSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
              +E   +            S     +HD++E ++                  +  F++
Sbjct: 354 TIQRESGFI------------SGLVCVLHDVTEQQKI--------------DRERRQFVS 387

Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650
            VSHE+RTPLT++  + E + +  +          +        + ++ ++NDLL +S++
Sbjct: 388 NVSHELRTPLTSMRSYIEALNDGAW--KDPEVAPSFLKVTQDETDRMIRMINDLLSLSRM 445

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANE----------KRILIRTSFANNIPRILAD 700
           +SG + L FE V+L+E  +  ++   +   +          K   I+  F      +  D
Sbjct: 446 DSGTVKLDFELVNLNELFNYILNRFDMMLKKDNNDTRETKSKNYTIKRDFTKRDLWVEID 505

Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760
                Q+  NI++NAI ++P GG I       ++  VIL + D G+G+   +L      F
Sbjct: 506 TDKFIQVVDNIMNNAIKYSPDGGVITCRL-LETHNHVILSITDQGLGIPRKDLGHIFDRF 564

Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            ++  ++     GTGLGL ++K +++ + GK ++ S   KG+   I  P
Sbjct: 565 FRVDKARSRAQGGTGLGLAISKEVIEMHHGKIWVDSIEGKGSTFYISLP 613


>gi|325107359|ref|YP_004268427.1| PAS/PAC sensor signal transduction histidine kinase [Planctomyces
           brasiliensis DSM 5305]
 gi|324967627|gb|ADY58405.1| PAS/PAC sensor signal transduction histidine kinase [Planctomyces
           brasiliensis DSM 5305]
          Length = 642

 Score =  327 bits (838), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 88/620 (14%), Positives = 204/620 (32%), Gaps = 24/620 (3%)

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLKTE 257
            + F  L E              +            +  +       +   H DD L+  
Sbjct: 20  AEPFRLLAESIPQLVWTALPDGRLDYTNRRWIEYTGMTAEESRGWSWKEALHPDDRLQCL 79

Query: 258 KYPLLT-SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP-SLSAYF 315
                   +   +  +    + + +          + +  +    +              
Sbjct: 80  DQWTTAVDQLVPMKMETRMLSADGSSRWFLVQAEPIFDQEQRPICWFGTCTDIHEQRTKQ 139

Query: 316 DEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
              E      V+      + +   G   +AN     +    S+DD+        + +   
Sbjct: 140 RLIEQRCQRLVEAAHDGIWEIGLDGRTLFANKRMAEMLGC-SLDDLLERNVYDFIFED-- 196

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
             D +  +   L R          R    +                 +         G+ 
Sbjct: 197 --DLDTAREHSLRRRSGISETFEWR---WRRADGREQWTLAASSPLVDASGHITGSVGVF 251

Query: 435 PEDVDTRIN--KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
            +    R              L  ++++    +   + +G  + +NR  +K+ G    ++
Sbjct: 252 TDSTAHRNKNVSAADAARRRLLEDVVDSVEAPVYAKDLQGRYIFSNRHHTKIRGGVQNEV 311

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
           L      F        ++     ++      +  +  + +  + +         +     
Sbjct: 312 LGARPDQFFGSELADALSANDRRVVEAGHSMSF-RELVPADGQVREFVSLKTPLRDADGQ 370

Query: 553 --CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
                       E  +   ++          +  K +FLA ++HE+R PL  I    E++
Sbjct: 371 IHGVFGISTPQPETTRVNEQILTTLSDLSLANQRKDEFLAMLAHELRNPLAPIRTGIELL 430

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
              R          E    +D+    ++ +V+DLLD+S+I  GK++L  + ++L + + +
Sbjct: 431 ---RIAADDPEVLQETIEVMDQQSRQLVTLVDDLLDVSRIARGKIDLRHDLINLADVIDQ 487

Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
           A++  +   ++          +   ++  D R + Q+  N+L+NA  +TP GG++ +   
Sbjct: 488 AVTASRPLLDDANHEFHVELPDCPLQVQGDSRRLVQVVSNLLNNAAKYTPRGGRVDLIVQ 547

Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
              N  + + +RDTG+G+  +  E+  + F Q+   Q  R  G G+GL L + +V  + G
Sbjct: 548 PEPN-RIGIAIRDTGIGIPEHMRERIFELFTQVDERQHDRYSGLGIGLTLVRTLVHLHNG 606

Query: 791 KFYIFS-TPAKGTLIEIIFP 809
           +  + S    +G+   ++ P
Sbjct: 607 EIQVHSDGQGQGSTFTVLLP 626



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 38/416 (9%), Positives = 106/416 (25%), Gaps = 23/416 (5%)

Query: 68  LDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH- 126
            +    F         +  W     G L   +    +  G  A +  G    +       
Sbjct: 17  ANPAEPFRLLAESIP-QLVWTALPDGRLDYTNRRWIEYTGMTAEESRGWSWKEALHPDDR 75

Query: 127 IDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHV 186
           +   +     + +      +T +   +G++ +  +   A PI+ + +       FG    
Sbjct: 76  LQCLDQWTTAVDQLVPMKMETRMLSADGSSRWFLVQ--AEPIFDQEQRPI--CWFGTCTD 131

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY 246
                  + L ++  ++             ++        + +      + + +      
Sbjct: 132 IHEQRTKQRLIEQRCQRLVEAAHDGIWEIGLDGRTLFANKRMAEMLGCSLDDLLERNVYD 191

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
           +  +DD+    ++ L      S   +  +   +  +         L + S      +   
Sbjct: 192 FIFEDDLDTAREHSLRRRSGISETFEWRWRRADGREQWTLAASSPLVDASGHITGSVGVF 251

Query: 307 NHPSLS------AYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDD 359
              +        A       L  + VD    P +     G   ++N     +      + 
Sbjct: 252 TDSTAHRNKNVSAADAARRRLLEDVVDSVEAPVYAKDLQGRYIFSNRHHTKIRGGVQNEV 311

Query: 360 IEIAGG-------LSTLLDAPK--LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
           +               L    +  +   +++    L  +D       +    ++      
Sbjct: 312 LGARPDQFFGSELADALSANDRRVVEAGHSMSFRELVPADGQVREFVSLKTPLRDADGQI 371

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK-MEIEVMQLCSILEATSDGI 465
             +  I   +      N        +       K + + +   +L + L     GI
Sbjct: 372 HGVFGISTPQPETTRVNEQILTTLSDLSLANQRKDEFLAMLAHELRNPLAPIRTGI 427


>gi|229133944|ref|ZP_04262766.1| hypothetical protein bcere0014_28600 [Bacillus cereus BDRD-ST196]
 gi|228649504|gb|EEL05517.1| hypothetical protein bcere0014_28600 [Bacillus cereus BDRD-ST196]
          Length = 801

 Score =  327 bits (838), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 109/532 (20%), Positives = 219/532 (41%), Gaps = 47/532 (8%)

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVD----KCPIPFFV-YSHGNLFYANPSFLLL 351
            +  E +      +     +     T E ++           +    G++  AN ++  +
Sbjct: 294 GQVIEVVGSTVDITKRKKVESELRATKELLESFIKHNVDAITISDREGHILQANKAYEKI 353

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ-WNRENS 410
             + S + I            P + D    + +   +   T  +   RL T++  N  + 
Sbjct: 354 FGWSSQEIIGKRL--------PCVPDFLMDESLENIQRILTEESIVTRLETVRQRNDGSL 405

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK-------MEIEVMQLCSILEATSD 463
           L ++       +     +  + I  +  + +  +R+       +    M+  +++E  +D
Sbjct: 406 LDVSLTVSPILDVRGNVIALSAICRDISERKQAERERHRLHQQLRDSEMKYRALIEQATD 465

Query: 464 GIAI--INREG---IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
            + +  +N +      +  N    K FGY  E++L  PF   + Q +P ++   L +I  
Sbjct: 466 AVYVVELNEDHVPSRFIEVNPVGCKRFGYSREELLSLPFPNVVPQGSPLIVR-LLEKIRE 524

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578
                TL+   +  T++       + +  L     +     DI+E  + +  L  ++K+A
Sbjct: 525 GQTSFTLQDEYVFPTRKIITTEFSVRVFNLNGKKVFLSISRDITERLKTEELLRKSEKLA 584

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
                        ++HEI  PLTA+ GF +++K+      GN     Y N +      + 
Sbjct: 585 VV-----GQLATAMAHEINNPLTAMKGFMQLLKST-----GNENDQGYINIVSSEIERIE 634

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
            I N+ + ++K +  K+  +     +   + + ++L+Q  A    I IR  F  +I  I 
Sbjct: 635 SITNEFMAVAKPQVVKIQPN----DIGVLMDQVLTLLQPQAMMNNIQIRIDFTPDISLIP 690

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
            +   +KQ+ +NIL NAI   P GG+I+I      N+++I+R  D G G++   +    +
Sbjct: 691 CEGNQLKQVFVNILKNAIESMPRGGEILIQIDKLDNDQIIIRFIDQGCGISKERIPYLGE 750

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           PF        I+ EG GLGL +   +++ + GK +I S   KGT +E+  P+
Sbjct: 751 PFY------SIKEEGIGLGLMICYKIIETHHGKVFIESEINKGTTVEVTLPI 796



 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 44/286 (15%), Positives = 90/286 (31%), Gaps = 21/286 (7%)

Query: 313 AYFDEGENLTPETVDKCPIPFF----VYSHGNLFYANPSFLLLTKYKSVDDIEI-AGGLS 367
               + +    +TV +     F    V  H      +  F     + S   +      + 
Sbjct: 186 RELIKSKQELTDTVHELQGGIFKFKKVGKHFIHTLCDGQFYYQKGFYSEQVVGKSLRTID 245

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
             +  P L          L   +   I        + W  + ++ +         +  + 
Sbjct: 246 ASIVPPHLVPQLMKH--YLQAWEGKEIIFE-----LPWPNDKTIILI--ALRPIKRNGQV 296

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
           +   G   +    +  + ++      L S ++   D I I +REG IL  N+A  K+FG+
Sbjct: 297 IEVVGSTVDITKRKKVESELRATKELLESFIKHNVDAITISDREGHILQANKAYEKIFGW 356

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
             ++I+ K     +           +  IL  +        T+    +  LL + + +  
Sbjct: 357 SSQEIIGKRL-PCVPDFLMDESLENIQRIL-TEESIVTRLETVRQRNDGSLLDVSLTVSP 414

Query: 548 LPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
           +               DISE KQ + +     +   ++S  K   L
Sbjct: 415 ILDVRGNVIALSAICRDISERKQAERERHRLHQQL-RDSEMKYRAL 459



 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/263 (12%), Positives = 73/263 (27%), Gaps = 24/263 (9%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG-KTT 148
           D  G++ + ++   K  G  + ++IG RL  V D L  +   +I  +L  ++     +T 
Sbjct: 338 DREGHILQANKAYEKIFGWSSQEIIGKRLPCVPDFLMDESLENIQRILTEESIVTRLETV 397

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR-------ALGKRLD 201
               +G+ L V + ++  PI              I                     +  +
Sbjct: 398 RQRNDGSLLDVSLTVS--PILDVRGNVIALS--AICRDISERKQAERERHRLHQQLRDSE 453

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPP--------PHLRMKNKVSSLTEYYAHKDDV 253
            K+  L E       V +   D    +                +  +S        +   
Sbjct: 454 MKYRALIEQATDAVYVVELNEDHVPSRFIEVNPVGCKRFGYSREELLSLPFPNVVPQGSP 513

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
           L       +   ++S   Q+++        T +               +LS     +   
Sbjct: 514 LIVRLLEKIREGQTSFTLQDEYVFPTRKIITTEFSVRVFN--LNGKKVFLSISRDITERL 571

Query: 314 YFDEGENLTP--ETVDKCPIPFF 334
             +E    +     V +      
Sbjct: 572 KTEELLRKSEKLAVVGQLATAMA 594


>gi|308271995|emb|CBX28603.1| hypothetical protein N47_G39270 [uncultured Desulfobacterium sp.]
          Length = 491

 Score =  327 bits (838), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 84/400 (21%), Positives = 181/400 (45%), Gaps = 30/400 (7%)

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII 474
           F P        + +       +  DTR           +L +++   SDG+   N E  +
Sbjct: 115 FTPEHLRATIAKAIYYTQTLRDIADTR----------SRLRTLVNRISDGVMCTNHENRV 164

Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
           +  N A  ++ G   E ++      F+       +      +      +  E+I +    
Sbjct: 165 VLANPAFLRMIGCSAESVIGSSTDEFINIARIREIIKETLNVNDSRALELTEEIPVNRHS 224

Query: 535 EEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
             + + L +        +         +HDI+  K+                  KS+F++
Sbjct: 225 RSEEIILNVRCTPFRDRTGRNIGVITVLHDITALKKM--------------DRMKSEFVS 270

Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650
            VSHEIR+P+ +++   +VI +   G L   +  +      R    +  +  +LLD+++I
Sbjct: 271 TVSHEIRSPMNSVLMQIQVILDGLAGELT-EKQRDILTRAYRKVENLAQMTTELLDLARI 329

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710
           ESG + L  EPV++ + + + ++     A    I +    +  +P +LA+ R+++++  N
Sbjct: 330 ESGLITLEREPVAMADVIRDQVAFYLPLAASASIGMDIDISQELPPVLANRRNMEEVLSN 389

Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           +++NAI ++P GG+I +S +  +N+ + +RV+DTG+G++  +  +  + F ++ + +   
Sbjct: 390 LITNAIKYSPGGGRITVSASI-ANDYLHIRVKDTGMGISAEDQHRIFERFYRVKDKKTRY 448

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             GTGLGL + K++++++ G+  I S   +G+      P+
Sbjct: 449 INGTGLGLVIVKSILESHQGRIKIESQEGEGSTFSFFLPI 488



 Score = 45.8 bits (107), Expect = 0.033,   Method: Composition-based stats.
 Identities = 24/235 (10%), Positives = 59/235 (25%), Gaps = 13/235 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL---KRQNTWYG 145
            +    +   +    + IG  A  +IG    +  +I  I     I + L     +     
Sbjct: 158 TNHENRVVLANPAFLRMIGCSAESVIGSSTDEFINIARIR--EIIKETLNVNDSRALELT 215

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA-----LGKRL 200
           +         +  + +++   P   R     G     ++H               +    
Sbjct: 216 EEIPVNRHSRSEEIILNVRCTPFRDRTGRNIGV--ITVLHDITALKKMDRMKSEFVSTVS 273

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
            +  S ++ +      +        +++      R   KV +L +      D L   +  
Sbjct: 274 HEIRSPMNSVLMQIQVILDGLAGELTEKQRDILTRAYRKVENLAQMTTELLD-LARIESG 332

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
           L+T E   +   +                    +            N  ++    
Sbjct: 333 LITLEREPVAMADVIRDQVAFYLPLAASASIGMDIDISQELPPVLANRRNMEEVL 387


>gi|309806454|ref|ZP_07700459.1| PAS domain S-box protein [Lactobacillus iners LactinV 03V1-b]
 gi|308167127|gb|EFO69301.1| PAS domain S-box protein [Lactobacillus iners LactinV 03V1-b]
          Length = 612

 Score =  327 bits (838), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 85/392 (21%), Positives = 173/392 (44%), Gaps = 29/392 (7%)

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
           ++  E      I    ++        + E  +L ++L   +DG+   +R G I   N   
Sbjct: 232 DEMGELARAFNILSVRIERSQEVS--DSERRRLDNVLMHMTDGVIATDRHGNITIINETA 289

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
                    ++  +P T  L     +     + +++S      +        +       
Sbjct: 290 LNFLDKTENEVKGEPITQLLGLKEVT-----IQDLMSTQQELIVTANVNTHDELILHADF 344

Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
            +I +   F S     +HDI+E ++ +N+              +  F++ VSHE+RTPLT
Sbjct: 345 SLIQRVTGFVSGLICVLHDITEQQKNENE--------------QRQFVSNVSHELRTPLT 390

Query: 602 AIIGFSEVIKNQRFGPLGNPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
           ++  + E + +   G   N     ++   I      ++ ++NDLL++S+++ G + +  E
Sbjct: 391 SLRAYVEALND---GAWKNENIAPQFLGVIQNETERMIRMINDLLNLSRMDRGVVKMDLE 447

Query: 661 PVSLDEAVSEAISLVQLYANEKRIL---IRTSFANNIPRILADLRSVKQIALNILSNAIH 717
            V+L++ +S  ++   +      +    IR  F +    +  D   + Q+  NI++NAI 
Sbjct: 448 WVNLNDFLSHILNRFDMMLKNDGVKKYKIRRIFPHQALWVEIDTDKMMQVIDNIMNNAIK 507

Query: 718 FTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
           ++P GG I I     +++ VIL + D G+G+   +L +    F ++  ++  +  GTGLG
Sbjct: 508 YSPDGGLITIRL-LQTHKHVILSISDQGLGIPRKDLSRIFDRFYRVDKARSRKQGGTGLG 566

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           L ++K +V+A+ GK +  S+   G+   I  P
Sbjct: 567 LAISKEIVEAHHGKIWADSSEGNGSTFYISIP 598


>gi|221207869|ref|ZP_03580876.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
           CGD2]
 gi|221172366|gb|EEE04806.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
           CGD2]
          Length = 751

 Score =  327 bits (838), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 104/611 (17%), Positives = 209/611 (34%), Gaps = 30/611 (4%)

Query: 213 GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ 272
             ++V +     F   + P  +      +           +       L+ +   S P  
Sbjct: 4   AIATVLQALAIRFGGANMPLAVYYPLLAAIAWATSFLFGLIATLASSVLVWTLFLSDPAA 63

Query: 273 EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP 332
                        +     +   +  +    +   +                 ++  P  
Sbjct: 64  YAMSLSERLVRLGEFALIGVLACAVVAAVRHARVTNERARRREAAARAQFEALLNALPDG 123

Query: 333 FFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR 391
                    L Y N +   L   +  D    AG     +      D   ++   L  +  
Sbjct: 124 VIAADTNARLTYVNAAAAALLGCRPDDA---AGRALRDVLQLTDRDGRRVQTSALEHALG 180

Query: 392 TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV 451
                +   H ++      + +       A+          +  +    R      ++  
Sbjct: 181 GTRT-TCERHWLRAAGGEPVPVAETAAPIADADGNVDGAVLLLRDASADRARADAAQVR- 238

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
               ++++A+ D +  I+R+  I+S N A  ++FGY  E    + F   +      +  H
Sbjct: 239 ---RAVVDASPDALIGIDRDARIVSWNPAAQRIFGYDEEAAYGRRFDSLIAM--RWLKRH 293

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK------ 565
            L +              L   ++       +  + +   +   + +  I+  +      
Sbjct: 294 PLVQTFDHLREIVGPVDLLCVRRDGGRFRATVAARPVRGEARDGVALS-ITLRETGAQRR 352

Query: 566 ------QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
                 +       A + A   +  K + LA VSHE+RTPL  I G+ EV++N     L 
Sbjct: 353 QDRRTQRSLRSARDAGEQAATSNRLKDELLATVSHELRTPLNVIYGWIEVLRNSGDDTL- 411

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
               ++  + IDRS   +  +V D+LD S + +GK+ L   PV +    ++ ++  Q  A
Sbjct: 412 ---RVQAIDAIDRSARSLTRMVGDILDASSLSTGKLRLDTMPVDVVRLFADVVAAFQTAA 468

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
           +   I +          +  D   ++Q+  N++SNA+ FTP+GG + +S  H  +   +L
Sbjct: 469 SSAGIALEFESRVATCIVSGDAERLRQMLSNLVSNALKFTPAGGDVTVSVAH-DDTHAVL 527

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-P 798
            V DTG G+    +      F +  +S      G GLGL + + +V  + G   + S   
Sbjct: 528 TVTDTGQGIAPEFVPHVFDMFRRADDSPASSRRGLGLGLSIVRHIVQLHGGTVVVDSAGR 587

Query: 799 AKGTLIEIIFP 809
            +GT   +  P
Sbjct: 588 NRGTTFTVKLP 598



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/260 (12%), Positives = 64/260 (24%), Gaps = 21/260 (8%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR--QNTWYGKT 147
           D +  L  ++      +G       G  L DV  +   D        L+     T     
Sbjct: 128 DTNARLTYVNAAAAALLGCRPDDAAGRALRDVLQLTDRDGRRVQTSALEHALGGTRTTCE 187

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
             W        VP+   A PI   +    G                 A  +R     S  
Sbjct: 188 RHWLRAAGGEPVPVAETAAPIADADGNVDGAVLLLRDASADRARADAAQVRRAVVDASPD 247

Query: 208 H----EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK------------- 250
                +      S       IF       + R  + + ++     H              
Sbjct: 248 ALIGIDRDARIVSWNPAAQRIFGYDEEAAYGRRFDSLIAMRWLKRHPLVQTFDHLREIVG 307

Query: 251 --DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
             D +          +  ++ P + +         T ++     + + +      S R+ 
Sbjct: 308 PVDLLCVRRDGGRFRATVAARPVRGEARDGVALSITLRETGAQRRQDRRTQRSLRSARDA 367

Query: 309 PSLSAYFDEGENLTPETVDK 328
              +A  +  ++    TV  
Sbjct: 368 GEQAATSNRLKDELLATVSH 387



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 29/280 (10%), Positives = 61/280 (21%), Gaps = 15/280 (5%)

Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD 251
              AL   L        +     + V      +   +      R    V  LT+      
Sbjct: 112 QFEALLNALPDGVIA-ADTNARLTYVNAAAAALLGCRPDDAAGRALRDVLQLTD---RDG 167

Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
             ++T           +  E+              +    + +        +      S 
Sbjct: 168 RRVQTSALEHALGGTRTTCERHWLRAAGGEPVPVAETAAPIADADGNVDGAVLLLRDASA 227

Query: 312 SAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGG----- 365
                +   +    VD  P     +     +   NP+   +  Y                
Sbjct: 228 DRARADAAQVRRAVVDASPDALIGIDRDARIVSWNPAAQRIFGYDEEAAYGRRFDSLIAM 287

Query: 366 ---LSTLLDAPKLSDNNAIKPVMLY--RSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
                  L          + PV L   R D     A+     ++    + +A++    E 
Sbjct: 288 RWLKRHPLVQTFDHLREIVGPVDLLCVRRDGGRFRATVAARPVRGEARDGVALSITLRET 347

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
             Q  ++           D             +L + +  
Sbjct: 348 GAQRRQDRRTQRSLRSARDAGEQAATSNRLKDELLATVSH 387



 Score = 55.0 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/226 (11%), Positives = 62/226 (27%), Gaps = 6/226 (2%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID    +   +    +  G       G R   +  +  +  +  +      +    G   
Sbjct: 252 IDRDARIVSWNPAAQRIFGYDEEAAYGRRFDSLIAMRWLKRHPLVQTFDHLREIV-GPVD 310

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           L  +          +AA P+    R+     G  +    R     R   +R  +      
Sbjct: 311 LLCVRRDGGRFRATVAARPVRGEARD-----GVALSITLRETGAQRRQDRRTQRSLRSAR 365

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           +  +  ++  + K ++ +  S      +      +       DD L+ +    +     S
Sbjct: 366 DAGEQAATSNRLKDELLATVSHELRTPLNVIYGWIEVLRNSGDDTLRVQAIDAIDRSARS 425

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
           L           +  T K    T+  +    F  +      + S+ 
Sbjct: 426 LTRMVGDILDASSLSTGKLRLDTMPVDVVRLFADVVAAFQTAASSA 471


>gi|92115761|ref|YP_575490.1| multi-sensor hybrid histidine kinase [Nitrobacter hamburgensis X14]
 gi|91798655|gb|ABE61030.1| multi-sensor hybrid histidine kinase [Nitrobacter hamburgensis X14]
          Length = 752

 Score =  327 bits (838), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 99/376 (26%), Positives = 168/376 (44%), Gaps = 16/376 (4%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           +++    +  S+ E+  D I + N +G+I S N A   L      D+L   F + + +  
Sbjct: 101 ELKEAEERARSLFESQDDLIVLRNADGLITSVNDAYCVLAQRSRADLLGSRFALPVLEQG 160

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISE 563
            S +    T I    +   L           + ++ R  + ++  +          D++ 
Sbjct: 161 ESAIESNGTRIHDQRVETAL---------GPRWIAWREGLVRIDANHPAELQCVGRDVTN 211

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + +  L  A+  A   +  KS FLA  SHEIRTPL  IIG S ++ +    P      
Sbjct: 212 RTETEYALGEARDHANAANRAKSRFLAMTSHEIRTPLNGIIGMSGLLLDTSLTP----EQ 267

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
             Y   +  SG+ +L ++ +LLD S+IE+GK++L   P  L + + +   L+   A  ++
Sbjct: 268 TTYVKAVKASGDALLSLIEELLDYSRIEAGKIDLESRPFILSDLIEDITELLAPRAQARQ 327

Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           + I       +P  ++ D   ++QI LN+  NAI FTPSGG  +I    T    +   V+
Sbjct: 328 LEIAAYIDEQLPIEVIGDATRLRQILLNLAGNAIKFTPSGGVALIVEPGTEPGTIRFMVQ 387

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG+G+T     +  + F Q          GTGLGL ++  +V    G+  + S P  G+
Sbjct: 388 DTGIGITPDAQARVFREFEQADEQIARNYGGTGLGLSISDRIVKRMGGRITLESKPGAGS 447

Query: 803 LIEIIFPLYDTSHPHD 818
             E+  PL     P +
Sbjct: 448 TFEVSIPLPAHDSPPE 463


>gi|156740811|ref|YP_001430940.1| multi-sensor signal transduction histidine kinase [Roseiflexus
            castenholzii DSM 13941]
 gi|156232139|gb|ABU56922.1| multi-sensor signal transduction histidine kinase [Roseiflexus
            castenholzii DSM 13941]
          Length = 2161

 Score =  327 bits (838), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 97/595 (16%), Positives = 219/595 (36%), Gaps = 31/595 (5%)

Query: 234  LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293
             R+  +V           +    E         +     +  H I +          TL 
Sbjct: 1573 ARLFAEVRRFNTELEQLVNERTAELQDAYARLAAERDRLQAVHAITVELTASLDLQTTLN 1632

Query: 294  NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTK 353
               + + + +  R    +      G+      ++             + +   + L    
Sbjct: 1633 RALELASKAIGARRGSIMLKDLKNGQLECRAVLNA--DGSVDSKRFTIMFERGAGLSGWV 1690

Query: 354  YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
             +  + + IA          +      ++ V+              + T       +   
Sbjct: 1691 MQRQEAVCIADVRDDPRWLHEEGRAEEVRSVIAAPLMTQDSPLGVLILTSPEVDFFNQDQ 1750

Query: 414  TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM----EIEVMQLCSILEATSDGIAIIN 469
              +    AN+    +    +     D    +  +      E  +  +IL++  +G+ +++
Sbjct: 1751 LQLLATIANEVAIVINNATLYSIINDIATERGNLWSQQREENSKNQAILQSLGEGVIVVD 1810

Query: 470  REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL---------D 520
             +  I+  N A  ++ G P + ++++P +   E       +     I            +
Sbjct: 1811 GDQNIVLYNAAAEQILGVPAQFVVKQPLSRIAEYCAGDGASERACRIYEGLRQGLQALTE 1870

Query: 521  LRQTLEKITLGSTKEEKLLSLRII-IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579
             ++   ++       + +L      +          + +HDI+                 
Sbjct: 1871 AQKNHNRMLELPEPTQSILLNFAPWVGPRNAMYGSVVVIHDITR--------------EV 1916

Query: 580  KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639
            +    K +F++ VSHE+RTPLT+I G+ +++       L N   + Y + +  + + +++
Sbjct: 1917 EADRAKREFISNVSHELRTPLTSIKGYVDLLMLNPKWKL-NEEQLSYLSVVKSNTHRLMN 1975

Query: 640  IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA 699
            ++ND+L+I +I+  K+ L F+ +S+     E    ++     KR+      A++ P ++A
Sbjct: 1976 LINDILEIGRIDDNKVGLTFKHISIGAIFEEVNKTLRAEIERKRLSFSIEVADHTPPVMA 2035

Query: 700  DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKP 759
            D   + Q+ LN+ SNA+ +T   G + +         + + V D GVG++  + +   + 
Sbjct: 2036 DETRLTQVVLNLASNAVKYTYPEGSVKLRAGLNPAGLLQVDVIDNGVGISPEQQQHLFRR 2095

Query: 760  FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
            F +  N  +    GTGLGL +AK+ V+ + G+ ++ S P KG+    I PL    
Sbjct: 2096 FYRADNPLRDEAGGTGLGLSIAKSYVEMHGGQMWVESEPGKGSTFSFIIPLTQPE 2150


>gi|326387091|ref|ZP_08208701.1| sensory box histidine kinase [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326208272|gb|EGD59079.1| sensory box histidine kinase [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 1172

 Score =  326 bits (837), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 109/668 (16%), Positives = 233/668 (34%), Gaps = 40/668 (5%)

Query: 175 FSGFRGFGIVHVNR------VDNDPRALGKRLDKKFSHLHEIKKG--HSSVEKEKYDIFS 226
             GF G   + V          N         +++F  L +       +          +
Sbjct: 254 VQGFIGCCALTVLPIAAVLGERNRLVHALSANERRFRELSQSAPIGIVTIGLDHAITYAN 313

Query: 227 QQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT-SEESSLPEQEDFHTINL-NQYT 284
            +      R   ++ +        +D+ +T    L + + E+   E       +   Q  
Sbjct: 314 PEMARIAGRSAEQLCTEKVGENLGEDLARTLDQTLESCTSETDFAEVSFALARDGDGQRW 373

Query: 285 KKQYFGTLQNNSKESFEYLSHRNH----PSLSAYFDEGENLTPETVDKCPIPFFVYS-HG 339
            +  F    +  +    ++                 + E       D        +   G
Sbjct: 374 FQTRFAPRLDEQRRLLGWIGTVMDVTQLRRSEQRLAQSERELRLLADNSGDVICSFGPSG 433

Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399
            + YA+ +   +    + D +     L + +D   +                        
Sbjct: 434 VILYASAATERMLGCSARDLVGR--DLLSFVDGDDVEHVRQTFADSSSGRHGETCGFRWV 491

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC---- 455
           L     + E                P  +       +  + ++ + ++  +  +L     
Sbjct: 492 L----PDGERLWVEASFGASGEGATPGPL--VATIRDISERQMAEAEILEKNARLRETNR 545

Query: 456 --SILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILR-KPFTVFLEQNTPSVMNH 511
             S+ E  ++ G    +  G     + +   + G   + +   + +   +     + +  
Sbjct: 546 LMSLAENLAEFGHWHYDLVGGASDWSPSFMDIHGLMPDRVPNIEAYFATIVPEQRASVRD 605

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRII----IKKLPFSSCYSLTMHDISEWKQE 567
              + +         + T     + ++ ++ +     I      +       DI+   + 
Sbjct: 606 VFEDAMRTGRA--FRRATRIVRPDGQIRTVEVQGQGEIDAHGNLAGIFGVCQDITVELEV 663

Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN-QRFGPLGNPRYIEY 626
           + +LS A+  AE  +  ++ +LA +SHEIRTP+T ++   E++       P   P     
Sbjct: 664 QQELSRARDRAEAAAEERARYLAVMSHEIRTPMTGVLATYELLAQYGNDIPWPQPDIPRL 723

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
            +        ++ I++D+LD +K E+GK++L     +  EA++ A+ L +  A  K I +
Sbjct: 724 ISATQAHAKTLMSILDDVLDQAKGEAGKLDLELVAFNPGEALAGAVDLFRGQAAAKGIAL 783

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
               A  +P ++ D     QI  N+LSNAI FT  G ++  S          + V DTG+
Sbjct: 784 ECH-AEAMPDVVGDPARFHQIVSNLLSNAIKFTSQG-KVSASCEQLDGAFYEVCVSDTGI 841

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+    L++  +PF Q   +   R  GTGLGL + +++V +  G+  + S P++G+   +
Sbjct: 842 GIAADALDRIFEPFAQADTTTSRRFGGTGLGLAIVRSLVTSMGGELTLDSVPSRGSTFTV 901

Query: 807 IFPLYDTS 814
             PL   S
Sbjct: 902 RLPLSAQS 909



 Score = 81.2 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 36/389 (9%), Positives = 91/389 (23%), Gaps = 25/389 (6%)

Query: 74  FVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI 133
           F        +     I     +   + E+ +  G  A ++   ++ +          +  
Sbjct: 289 FRELSQSAPIGIV-TIGLDHAITYANPEMARIAGRSAEQLCTEKVGENLGEDLARTLDQT 347

Query: 134 GDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193
            +    +  +   +     +G            P     R   G+   G V         
Sbjct: 348 LESCTSETDFAEVSFALARDGDGQR-WFQTRFAPRLDEQRRLLGW--IGTVMDVTQLRRS 404

Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL---RMKNKVSSLTEYYAHK 250
                + +++   L +              I    +    +     ++ V      +   
Sbjct: 405 EQRLAQSERELRLLADNSGDVICSFGPSGVILYASAATERMLGCSARDLVGRDLLSFVDG 464

Query: 251 DDVL-KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF---EYLSHR 306
           DDV    + +   +S          +   +  +   +  FG     +             
Sbjct: 465 DDVEHVRQTFADSSSGRHGETCGFRWVLPDGERLWVEASFGASGEGATPGPLVATIRDIS 524

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY--------ANPSFLLLTKYKSVD 358
                 A   E      ET     +   +   G+  Y         +PSF+ +       
Sbjct: 525 ERQMAEAEILEKNARLRETNRLMSLAENLAEFGHWHYDLVGGASDWSPSFMDIHGLMPD- 583

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
                  +        + +  A    +   + RT  A   R   I         +     
Sbjct: 584 ---RVPNIEAYFATI-VPEQRASVRDVFEDAMRTGRAFR-RATRIVRPDGQIRTVEVQGQ 638

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKM 447
            + +         G+  +       ++++
Sbjct: 639 GEIDAHGNLAGIFGVCQDITVELEVQQEL 667


>gi|269838421|ref|YP_003320649.1| multi-sensor signal transduction histidine kinase [Sphaerobacter
           thermophilus DSM 20745]
 gi|269787684|gb|ACZ39827.1| multi-sensor signal transduction histidine kinase [Sphaerobacter
           thermophilus DSM 20745]
          Length = 788

 Score =  326 bits (837), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 128/792 (16%), Positives = 265/792 (33%), Gaps = 98/792 (12%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D  G ++  ++     +G             + +++ +     +   + R  T +G    
Sbjct: 23  DPAGVIQYRNQAAQHLLGGPET---------LENVVQLGGPADLCQRVARGETVFGIPL- 72

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK-------RLDK 202
                  L   I L+A P+        G          R +    AL            +
Sbjct: 73  -----PGLGPDIRLSASPVRDTGGATVGMTVVLRREPVRDNTGLDALQLDAIAHAIASGR 127

Query: 203 KFSHLHEIKKG---------------HSSVEKEKYDIFSQQSPPPHLRMKNK-------- 239
               L E   G                S  +++         P P   + +         
Sbjct: 128 DIDTLLEHTFGFLQPLIGCDNISLAVPSPEDEDGRLRVLALRPTPFSTIFSTGEVAEAVQ 187

Query: 240 ---------VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG 290
                    V   T   A ++D L         +      E     TINL+  T   +  
Sbjct: 188 RVATNGVPVVVDDTFSAAFQEDALLRSLGIRSYAIYPLRGEHGILGTINLSSRTPAAFSD 247

Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENL-TPETVDKCPIPFFVYS---HGNLFYANP 346
            +    +    +++      L     E   +   + +   P    V        +   N 
Sbjct: 248 RVLAVIERVASHVALAVEKILLLESTERHRVFLEQVLQYVPAGVIVVGPPPDLRVLTVNK 307

Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
            +          + +   GL      P L +      +    +         R    +  
Sbjct: 308 HYRGFLDEPYRSE-KDLVGLPLRTIIPNLDEVGFGAALAKVFTTGET--VEVRDVVYEGL 364

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI-------EVMQLCSILE 459
              ++ +        ++        G+  +  +    +R++E        +   L +I+E
Sbjct: 365 ERGTIHLDSWYVPLRDRLGRVEAVIGLVTDTTERVRYQRRIEELAKSAAQQATALSTIIE 424

Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR-----KPFTVFLEQNTPSVMNHYLT 514
           +  +G+ + +  G ++  N A ++LFG   E  L+       F+     +   +    + 
Sbjct: 425 SMVEGVYVCDGTGRVVLVNEAGARLFGITTEQALQPLAKYAEFSQARYPDGRPIPTEEMP 484

Query: 515 EILSLDLRQTLEKITLGSTKE-EKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKN 569
               L    + +   +    +  + + LR     +              +D++  +Q + 
Sbjct: 485 LARGLRGETSADWEQIVRRADTGEDIHLRFAYSPIVDDRGTIVGAVAVANDMTRTRQLE- 543

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN--QRFGPLGNPRYIEYA 627
                          + +FL+  +HE++TP+T++  F++ +    QR G L   R     
Sbjct: 544 -------------RQREEFLSIAAHELKTPVTSVKLFTQGMLRTLQRRGTLAPERAERDL 590

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE-KRILI 686
             I    + +  +V+DLLD+S++ +G++  HFE V L   V   +   +   +E  R  +
Sbjct: 591 QTILSQIDRLTRLVDDLLDVSRVRTGRLEYHFETVDLIALVEAVVDRFRRQIDEDDRYEL 650

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-TSNEEVILRVRDTG 745
           R   A ++P  + D   + Q+  N+LSNAI ++P+GG I +       +  + + V D G
Sbjct: 651 RLIAAPDLPATVVDPHRIDQVLTNLLSNAIKYSPTGGTISVQVGPGAESGWIRIEVSDPG 710

Query: 746 VGMTNYELEKAMKPFGQIPNSQQ-IRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTL 803
           VG+   E+    +PF +   +       G GLGL +++A+V+ + G  +  S     G+ 
Sbjct: 711 VGLDPPEIAGLFEPFARAAGNTTVRNISGIGLGLYISRAIVERHGGLIWAESEGQGCGST 770

Query: 804 IEIIFPLYDTSH 815
             +  P+   SH
Sbjct: 771 FIVELPVRPASH 782



 Score = 46.2 bits (108), Expect = 0.022,   Method: Composition-based stats.
 Identities = 19/244 (7%), Positives = 51/244 (20%), Gaps = 9/244 (3%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMI--GMRLCDVSDILHIDPNNHIGDLL-----K 138
            +  D  G +  ++E   +  G    + +    +  + S   + D      + +      
Sbjct: 430 VYVCDGTGRVVLVNEAGARLFGITTEQALQPLAKYAEFSQARYPDGRPIPTEEMPLARGL 489

Query: 139 RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
           R  T      +     T   + +  A  PI        G     + +            +
Sbjct: 490 RGETSADWEQIVRRADTGEDIHLRFAYSPIVDDRGTIVGA--VAVANDMTRTRQLERQRE 547

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
                 +H  +       +  +      Q+          +          +   L  + 
Sbjct: 548 EFLSIAAHELKTPVTSVKLFTQGMLRTLQRRGTLAPERAERDLQTILSQIDRLTRLVDDL 607

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
             +       L    +   +          F    +        L        +      
Sbjct: 608 LDVSRVRTGRLEYHFETVDLIALVEAVVDRFRRQIDEDDRYELRLIAAPDLPATVVDPHR 667

Query: 319 ENLT 322
            +  
Sbjct: 668 IDQV 671



 Score = 39.6 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 17/36 (47%)

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
           L + L+   + + + +  G+I   N+A   L G P 
Sbjct: 8   LRAALDQFDEAVLVADPAGVIQYRNQAAQHLLGGPE 43


>gi|84385138|ref|ZP_00988170.1| two-component system sensory/regulatory protein-like protein (hybrid
            family) [Vibrio splendidus 12B01]
 gi|84379735|gb|EAP96586.1| two-component system sensory/regulatory protein-like protein (hybrid
            family) [Vibrio splendidus 12B01]
          Length = 1640

 Score =  326 bits (837), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 96/382 (25%), Positives = 169/382 (44%), Gaps = 19/382 (4%)

Query: 443  NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
                +     QL +IL  +    +++  E  +   N    +LFG    ++          
Sbjct: 917  ATEALRKAQHQLYNILNTSPIAASVV-VEEQVRYANDTAKRLFGVERTELNSINVETIYN 975

Query: 503  QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH--D 560
              +     +    +      + + +  +    +       +    L      +      D
Sbjct: 976  SLSDRDSLYKELNLKG----KVVNRELVLRKFDGSSFVALVSYYLLELDGEVATLFWAFD 1031

Query: 561  ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
            ISE K+   +L   K+ A+  S  KS+FLA +SHEIRTP+ AIIG S  +     G + N
Sbjct: 1032 ISEMKRLNEQLEEEKQRADLASQAKSEFLANMSHEIRTPMNAIIGLS-YLA---IGEISN 1087

Query: 621  PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
            P    Y   + RSG+ +L I+ND+LD SKIE+G++ +   P        + I L++  A+
Sbjct: 1088 PVARNYIEKVHRSGHSLLSIINDILDFSKIEAGQLVIDSIPFDPVTTFQDVIELMESKAD 1147

Query: 681  EKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE--- 736
            EK++ +  S    +   ++ D   + Q+ LN++ NAI FT S G + ++ TH  + +   
Sbjct: 1148 EKQLKLSMSIDPELDTPLIGDPLRLFQVILNLIGNAIKFT-SHGNVTLNVTHLESNDRSV 1206

Query: 737  -VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
             + + V DTG+G++     K  + F Q  ++   +  GTGLGL +++ +V A   K  + 
Sbjct: 1207 SMKVVVSDTGIGISEENRRKLFQAFSQADSTTTRKFGGTGLGLNISQKLVQAMGSKISVA 1266

Query: 796  STPAKGTLIEI--IFPLYDTSH 815
            S   KG+        P  D+  
Sbjct: 1267 SVLGKGSEFSFVLTLPRSDSEE 1288



 Score = 45.0 bits (105), Expect = 0.059,   Method: Composition-based stats.
 Identities = 14/157 (8%), Positives = 43/157 (27%), Gaps = 8/157 (5%)

Query: 304  SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDD---- 359
                    +    + ++     ++  PI   V     + YAN +   L   +  +     
Sbjct: 910  QIAIANDATEALRKAQHQLYNILNTSPIAASVVVEEQVRYANDTAKRLFGVERTELNSIN 969

Query: 360  ----IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
                        +L     L      + ++L + D +   A    + ++ + E +     
Sbjct: 970  VETIYNSLSDRDSLYKELNLKGKVVNRELVLRKFDGSSFVALVSYYLLELDGEVATLFWA 1029

Query: 416  IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
                +  +  E + +     +      ++    +   
Sbjct: 1030 FDISEMKRLNEQLEEEKQRADLASQAKSEFLANMSHE 1066


>gi|270289945|ref|ZP_06196171.1| two-component system, OmpR family, sensor histidine kinase VicK
           [Pediococcus acidilactici 7_4]
 gi|304385804|ref|ZP_07368148.1| sensor histidine kinase VicK [Pediococcus acidilactici DSM 20284]
 gi|270281482|gb|EFA27314.1| two-component system, OmpR family, sensor histidine kinase VicK
           [Pediococcus acidilactici 7_4]
 gi|304328308|gb|EFL95530.1| sensor histidine kinase VicK [Pediococcus acidilactici DSM 20284]
          Length = 615

 Score =  326 bits (837), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 82/398 (20%), Positives = 162/398 (40%), Gaps = 38/398 (9%)

Query: 423 QFPENMPQNGIEPEDVDTRINKRKM-EIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
              E         +        +++ E E  +L S+L   +DG+   +R G I   N   
Sbjct: 234 GDDELGQLAAAVNDLSVRVEESQELTESERRRLDSVLGYMTDGVLATDRRGRITIVNEMA 293

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
           +       + I+ K     L+      +   L            +   L  + +E+ L L
Sbjct: 294 TDFLNLENDQIVGKSILDILDLRGSVTLRDLLEN---------QDPEVLDLSNDEQDLIL 344

Query: 542 RIIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
                 +   S +       +HD++E ++                  +  F++ VSHE+R
Sbjct: 345 HASFALIQRESGFISGLVCVLHDVTEQQKIDQD--------------RKRFVSNVSHELR 390

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           TPLT++  + E + +   G   +P     +        + ++ ++NDLL++S+++ G   
Sbjct: 391 TPLTSMKSYIEALVD---GAWKDPNVAPNFLKVTQEETDRMMRMINDLLNLSRMDLGTAR 447

Query: 657 LHFEPVSLDEAVSEAISLVQLYAN-----EKRILIRTSFANNIPRILADLRSVKQIALNI 711
           L  E V+L+E  +  +    +        EK   I+  F      +  D   ++Q+  NI
Sbjct: 448 LDKEYVNLNELFNHILDRFDMILKNGEKSEKNYTIKRDFTRRDIWVEVDTDKIQQVLDNI 507

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           ++NAI ++P GG I       ++  VI+ + D G+G+    +      F ++  ++    
Sbjct: 508 MNNAIKYSPDGGVITCRL-VETHNHVIMSITDQGLGIPKEAISHVFDRFYRVDKARSRAQ 566

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            GTGLGL ++K +V  + G+ ++ S   +G+   I  P
Sbjct: 567 GGTGLGLAISKEVVQMHGGRIWVESREGEGSTFYISLP 604



 Score = 40.8 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/142 (14%), Positives = 44/142 (30%), Gaps = 10/142 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            D  G +  ++E     +     +++G  + D+   L +  +  + DLL+ Q+       
Sbjct: 280 TDRRGRITIVNEMATDFLNLENDQIVGKSILDI---LDLRGSVTLRDLLENQDPE----- 331

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           +  +      + +  +   I   +   SG     ++H            KR     SH  
Sbjct: 332 VLDLSNDEQDLILHASFALIQRESGFISGL--VCVLHDVTEQQKIDQDRKRFVSNVSHEL 389

Query: 209 EIKKGHSSVEKEKYDIFSQQSP 230
                      E     + + P
Sbjct: 390 RTPLTSMKSYIEALVDGAWKDP 411


>gi|254787007|ref|YP_003074436.1| sensory box histidine kinase/response regulator [Teredinibacter
           turnerae T7901]
 gi|237685955|gb|ACR13219.1| sensory box histidine kinase/response regulator [Teredinibacter
           turnerae T7901]
          Length = 668

 Score =  326 bits (837), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 105/491 (21%), Positives = 192/491 (39%), Gaps = 19/491 (3%)

Query: 332 PFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA-IKPVMLYRS 389
            F+ +  G        +F     Y  +D I+       LL+     D     + V     
Sbjct: 35  GFWEWDLGTNKLRWYGTFWRELGYSELD-IQTMTAPEVLLNYIHPDDRALFQQAVTATIR 93

Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449
           +   +    RL          L +        +         G        +  ++ +  
Sbjct: 94  EGVALDLCYRLQA---KAGYYLWVRVNGQGFRDASGWTHQLAGANYNISQLKQTEQALRA 150

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
              +   I+  T DG+   + +  ++S +    +  G+  ED+     T   +       
Sbjct: 151 SEARYSRIIAGTRDGVWDWSFDNNVISFSDICWEQIGFTAEDVRELNLTTIADWEARMSP 210

Query: 510 NHYLTEILSLD----LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH----DI 561
                   +L      R   +       K+     +R   +        ++ +     DI
Sbjct: 211 VDVKRFKEALRKHILERAPFDIEYQIKAKDGTQRWIRARAEATYNKEGRAVKISGSNMDI 270

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           +E K  +  +  AK  AE+ +  KS+FL+ +SHE+RTPL AI+G+ ++     +     P
Sbjct: 271 TELKNTQLAVVQAKVAAEQANQAKSEFLSSMSHELRTPLNAILGYVQLF---DYDTNLTP 327

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
              +    + ++G  +L ++N++LD++KIE+G+M L  EPV     + EA+ LV   A E
Sbjct: 328 DQCDNLQEVKKAGTHLLHLINEVLDLAKIEAGRMTLSMEPVYPQRLLDEAVRLVSPLAQE 387

Query: 682 KRILIRTS-FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
           + I I      +    I AD   +KQ  LN++SNA+ +    G + IS T      + + 
Sbjct: 388 QGITIERDALQHQQSAIFADNTRLKQALLNLISNAVKYNTKDGSVNISLTAVGEGRLRIM 447

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V DTG G+ +    +  +PF ++        EG+G+GL + K +V+   G     S    
Sbjct: 448 VTDTGRGIPDALQAQVFEPFNRLHAELG-AVEGSGVGLVITKRLVEMMGGTLGFHSEVGV 506

Query: 801 GTLIEIIFPLY 811
           G+   +  PL 
Sbjct: 507 GSRFWMDLPLA 517


>gi|49478009|ref|YP_037213.1| sensory transduction histidine kinase; sporulation kinase A
           [Bacillus thuringiensis serovar konkukian str. 97-27]
 gi|218904259|ref|YP_002452093.1| sporulation kinase [Bacillus cereus AH820]
 gi|228931049|ref|ZP_04094003.1| hypothetical protein bthur0010_57030 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|49329565|gb|AAT60211.1| sensory transduction histidine kinase; sporulation kinase A
           [Bacillus thuringiensis serovar konkukian str. 97-27]
 gi|218537874|gb|ACK90272.1| sporulation kinase [Bacillus cereus AH820]
 gi|228828612|gb|EEM74294.1| hypothetical protein bthur0010_57030 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
          Length = 801

 Score =  326 bits (837), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 103/533 (19%), Positives = 209/533 (39%), Gaps = 47/533 (8%)

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVD-----KCPIPFFVYSHGNLFYANPSFLLL 351
            +  E +      +     +   + T E ++                G +  AN ++  +
Sbjct: 294 GQVIEVVGSTVDITERKKVESELSATKELLESFIKHNLDAITISDREGYILQANKAYEKI 353

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ-WNRENS 410
             + S + I            P + D    + +   +   T  +   RL T++  N  + 
Sbjct: 354 FGWSSQEIIGKRL--------PCVPDFLMEESLKNIQKILTGESVVTRLETVRQRNDGSL 405

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK-------MEIEVMQLCSILEATSD 463
           L ++       +     +  + I  +  + +  +R+       +    M+  +++E  +D
Sbjct: 406 LDVSLTVSPILDVRGNVIALSAICRDISERKQAERERHRLHQQLRDSEMKYRALIEQATD 465

Query: 464 GIAII-----NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
            + ++     N     +  N    + FGY  E++L   F+  + Q++  ++   L +I  
Sbjct: 466 AVYVVELNEENAPSRFIEVNPVGCRRFGYSREELLSLSFSNIVPQDSQMIVR-LLEKIKK 524

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578
                TL+   +  T +       + +  L     +     DI+E  + +  L  ++K+A
Sbjct: 525 GQTSFTLQDEYVFPTGKVITTEFSVRVFNLNGKKVFLSISRDITERLKTEELLRKSEKLA 584

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
                        ++HEI  PLTA+ GF +++K+       N     Y N +      + 
Sbjct: 585 VV-----GQLATVMAHEINNPLTAMKGFMQLLKSTE-----NENNQGYINIVSSEIERIE 634

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
            I  + + ++K +  K+  +     +   + + + L+Q  A    I  R      IP I 
Sbjct: 635 SITTEFMAVAKPQVVKIQPN----DISVLMDQVLMLLQPQAMMNNIKFRIDLNPGIPLIS 690

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
            +   +KQ+ +NIL NAI   P GG+I+I      N +V +R  D G G+    +    +
Sbjct: 691 CEGNQLKQVFVNILKNAIESMPMGGEILIQLNILDNNQVSIRFIDQGCGIPKERIPYLGE 750

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
           PF        I+ EG GLGL +   +++ + GK +I S   KGT +E+  P++
Sbjct: 751 PFY------SIKEEGIGLGLMICYKIIETHQGKIFIESEVNKGTTVEVTLPIF 797



 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 44/286 (15%), Positives = 90/286 (31%), Gaps = 21/286 (7%)

Query: 313 AYFDEGENLTPETVDKCPIPFF----VYSHGNLFYANPSFLLLTKYKSVDDIEI-AGGLS 367
                 +    +TV +     F    V  H      +  F     + S   +      + 
Sbjct: 186 RELKRSKQELTDTVHELQGGIFKFKKVGKHFIHTLCDGQFYYQNGFYSEQVVGKSLRTID 245

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
             +  P L          L   +   I        + W  + ++ +         +  + 
Sbjct: 246 ASIIPPHLVPQLMKY--YLQAWEGKEIIFE-----LPWPNDKTIILI--ALRPIKRNGQV 296

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
           +   G   +  + +  + ++      L S ++   D I I +REG IL  N+A  K+FG+
Sbjct: 297 IEVVGSTVDITERKKVESELSATKELLESFIKHNLDAITISDREGYILQANKAYEKIFGW 356

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
             ++I+ K     +           + +IL           T+    +  LL + + +  
Sbjct: 357 SSQEIIGKRL-PCVPDFLMEESLKNIQKIL-TGESVVTRLETVRQRNDGSLLDVSLTVSP 414

Query: 548 LPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
           +               DISE KQ + +     +   ++S  K   L
Sbjct: 415 ILDVRGNVIALSAICRDISERKQAERERHRLHQQL-RDSEMKYRAL 459



 Score = 61.2 bits (147), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 38/286 (13%), Positives = 83/286 (29%), Gaps = 23/286 (8%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG-KTT 148
           D  GY+ + ++   K  G  + ++IG RL  V D L  +   +I  +L  ++     +T 
Sbjct: 338 DREGYILQANKAYEKIFGWSSQEIIGKRLPCVPDFLMEESLKNIQKILTGESVVTRLETV 397

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +G+ L V + ++  PI              I               RL ++     
Sbjct: 398 RQRNDGSLLDVSLTVS--PILDVRGNVIALS--AICRDISERKQAERERHRLHQQLRDSE 453

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLR--------------MKNKVSSLTEY-YAHKDDV 253
              +       +   +          R               + ++ SL+      +D  
Sbjct: 454 MKYRALIEQATDAVYVVELNEENAPSRFIEVNPVGCRRFGYSREELLSLSFSNIVPQDSQ 513

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
           +       +   ++S   Q+++        T +               +LS     +   
Sbjct: 514 MIVRLLEKIKKGQTSFTLQDEYVFPTGKVITTEFSVRVFN--LNGKKVFLSISRDITERL 571

Query: 314 YFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVD 358
             +E    + +      +     +   N   A   F+ L K    +
Sbjct: 572 KTEELLRKSEKLAVVGQLATVMAHEINNPLTAMKGFMQLLKSTENE 617


>gi|239908871|ref|YP_002955613.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239798738|dbj|BAH77727.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 1069

 Score =  326 bits (837), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 130/667 (19%), Positives = 228/667 (34%), Gaps = 47/667 (7%)

Query: 167 PIYSRNREFSGFRGFGIVHVNRVDND-PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF 225
           PI+    E +GF     + +     D     G+        +       + V      +F
Sbjct: 139 PIHGE-GEIAGF-----LRLRYALKDSALTGGRVWTIFGLAVAGAYVFLALVLNAMLHLF 192

Query: 226 SQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTK 285
             +      +    V +                         S   +E    +  ++   
Sbjct: 193 VLRPVNTLRQALEAVEAGDLDQTVPVAGGDALGRLGAAFNAMSARLRETSRWLGESRTEV 252

Query: 286 KQYFGTLQNNSKESFEYLSHRN---------HPSLSAYFDEGENLTPETVDKCPIPFF-- 334
           +++   L     E    L+  N                      L    ++         
Sbjct: 253 EEHRLLLARRVDERTAELARTNARLTTEITARTRAEDSLSRHLALYRAILESTAEAVLCV 312

Query: 335 -VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS-TLLDAPKLSDNNAIKPVMLYRSDRT 392
              S   +   N  FL L                           +           D  
Sbjct: 313 SANSDREVLVCNRRFLDLWDLPENWAQRPEPMDRFKPFLEKLADPDAVASGFRTLMLDGK 372

Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
            +A +    +   +                Q    + +     +    R  + ++   + 
Sbjct: 373 SMAETCHATS---DGRYIE----RRSGPILQDGVYIGRVFSYVDVTARRRTEAELRQTLA 425

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
           Q  ++L  T  G+A      +    N   + L GY  E IL +   V +     + +   
Sbjct: 426 QRDALLGNTRIGLATT-ENAVCTDINAQGAALLGYTREAILGQSIAVLIPD---AAVYQS 481

Query: 513 LTEILSLD--LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT---MHDISEWKQE 567
           L E    D   +    +       + +++ LR+  K +   +          DI+E K+ 
Sbjct: 482 LAESSDHDFVTQGFTRRECQVQRGDGEMIWLRLHGKSVRPEAPTISVVWAFDDITEEKRR 541

Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
           +  L  A+  AE+ S  K  FLA +SHEIRTPL A+IG S+ +   +  P      I++ 
Sbjct: 542 QQHLEQARDQAEEASRAKGAFLAVMSHEIRTPLNAVIGLSDALLEGQAAP----EQIDHL 597

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
             I  S   +L +VND+LD SKIE+GK+ L          V+EA+  V+L A++KR+ + 
Sbjct: 598 RAIRESAGHLLGVVNDILDFSKIEAGKLVLERRHFDPRALVAEALRAVELVASQKRLALS 657

Query: 688 TSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNE-----EVILR 740
            + A N+P  +  D   ++QI LN+L NA+ FT +G   + + T            + + 
Sbjct: 658 ATIAPNVPAALRGDPGRLRQILLNLLGNAVKFTAAGSVAVTVETVPADQTPAGRIGLAVA 717

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V DTG+G+      +  + F Q P     R  GTGLGL ++K +V+   G   + S    
Sbjct: 718 VTDTGIGLDPTRASELFERFNQGPGKAARRFGGTGLGLAISKELVERMGGHIGVTSRQGA 777

Query: 801 GTLIEII 807
           G+     
Sbjct: 778 GSRFAFT 784



 Score = 38.1 bits (87), Expect = 6.8,   Method: Composition-based stats.
 Identities = 16/241 (6%), Positives = 56/241 (23%), Gaps = 12/241 (4%)

Query: 96  KEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP--IE 153
            +I+ +    +G     ++G  +  +           + +         G T        
Sbjct: 447 TDINAQGAALLGYTREAILGQSIAVLIP--DAAVYQSLAESSDHDFVTQGFTRRECQVQR 504

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
           G    + + L    +       S    F        +   +   ++   +       K  
Sbjct: 505 GDGEMIWLRLHGKSVRPEAPTISVVWAFD---DITEEKRRQQHLEQARDQAEEASRAKGA 561

Query: 214 HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE 273
             +V   +              +    ++  +    +           + ++     + E
Sbjct: 562 FLAVMSHEIRTPLNAVIGLSDALLEGQAAPEQIDHLRAIRESAGHLLGVVNDILDFSKIE 621

Query: 274 DFHTINL-----NQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
               +        +    +    ++  + +    LS    P++ A          + +  
Sbjct: 622 AGKLVLERRHFDPRALVAEALRAVELVASQKRLALSATIAPNVPAALRGDPGRLRQILLN 681

Query: 329 C 329
            
Sbjct: 682 L 682


>gi|281412573|ref|YP_003346652.1| PAS/PAC sensor signal transduction histidine kinase [Thermotoga
           naphthophila RKU-10]
 gi|281373676|gb|ADA67238.1| PAS/PAC sensor signal transduction histidine kinase [Thermotoga
           naphthophila RKU-10]
          Length = 412

 Score =  326 bits (837), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 84/413 (20%), Positives = 174/413 (42%), Gaps = 29/413 (7%)

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
             + +    L             P       ++    + +    ++E+      +IL + 
Sbjct: 21  RKRLSEYKILIEKLSDMLGEKDVPPLYLFERLKKYVDNLKETISRVEVSRDNFLTILNSL 80

Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
           S+ I I++REG I   N    +L      +   +P+    E      +N  + E +  + 
Sbjct: 81  SEPIFILDREGKITFLNEIARELVQ-GRINPEGRPYYEIFEDYY---INEMVEETIKSEE 136

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLP-FSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
            Q           E+K   +++I  +L      + +  HD+++ ++              
Sbjct: 137 PQEGTL-VTYVGNEKKYFHVKVIPVELKSGDKIFVILFHDVTKERKLDE----------- 184

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
               + +F+A VSHE+RTPLT+I G++E +               +   I+     +  +
Sbjct: 185 ---MRREFIATVSHELRTPLTSIHGYAETLLEDDL--ENKELVKRFLKIIEEESARMTRL 239

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILAD 700
           +NDLLD+ K+E  ++N   + V L E V     ++Q  A E  + +     + +  +  +
Sbjct: 240 INDLLDLEKMEESEVNFEMKDVDLCEVVEYVYKIIQPIAEENEVDLIVECEDVV--VKGN 297

Query: 701 LRSVKQIALNILSNAIHFT---PSG-GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKA 756
              + Q+ LN++ NA+ +T     G  ++ +   + + + V++ V DTG G+      + 
Sbjct: 298 KERLIQMLLNLVDNAVKYTSLKEKGEKKVWVR-AYDTPDWVVVEVEDTGPGIPKESQSRI 356

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            + F ++  ++  +  GTGLGL + K +VD + GK  + S   +GT++ +  P
Sbjct: 357 FEKFYRVDKARSRKMGGTGLGLTIVKTIVDKHGGKIEVESEINQGTVMRVFLP 409


>gi|260897182|ref|ZP_05905678.1| aerobic respiration control sensor protein ArcB [Vibrio
           parahaemolyticus Peru-466]
 gi|308087996|gb|EFO37691.1| aerobic respiration control sensor protein ArcB [Vibrio
           parahaemolyticus Peru-466]
          Length = 718

 Score =  326 bits (837), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 89/406 (21%), Positives = 175/406 (43%), Gaps = 19/406 (4%)

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
               +         +E E       + ++      L S ++A+ D I   N +G+    N
Sbjct: 122 RIKAEEAREEAMQDLENEVFQRERTQLELAERTALLRSFIDASPDLIYYRNADGVFSGCN 181

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
           RA+ +L G     ++         +     +     ++ S +   T E+        +  
Sbjct: 182 RAMEELTGKKEHQLVGLSPWDVYSKEIAQPIVDTDQKVFSDNQAITYEQWLEYPDGRKHY 241

Query: 539 LSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
             LR +                 DI+E K+ +  L       EK S  K+ F++ +SHE+
Sbjct: 242 FELRKVPFYSKDGRHLGLVGFGRDITERKRHEESL-------EKASRDKTTFISTISHEL 294

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTPL  I+G S ++ + +          ++   I+ S   + +I ND++D+ K +  K+ 
Sbjct: 295 RTPLNGIVGLSRMLLDSQL----TEEQRKHMQTINVSAITLGNIFNDIIDMDKFDRRKLE 350

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNA 715
           L   P++ ++ V+E  S+  L A +K +       +++P+ I  D   ++Q+  N++SNA
Sbjct: 351 LLPAPLNFEDFVAEIESISALMAEQKGLRFDLERLSDLPKAIEVDATRLRQVIWNLVSNA 410

Query: 716 IHFTPSGGQI-IISTTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGE 772
           + FT  GG +  +S     +   +I+ V DTG+G+   EL+K    + Q+ + +      
Sbjct: 411 MKFTKEGGVVMTVSADVEEDFATIIMEVEDTGIGIPEAELDKIFAMYYQVKSGKDNLHAV 470

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF--PLYDTSHP 816
           GTG+GL ++K +++   G   + S    G+   +    P+ +   P
Sbjct: 471 GTGIGLAVSKQLINMMDGDITVTSEEGFGSTFTVSIHVPIVELEEP 516



 Score = 48.1 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/185 (11%), Positives = 48/185 (25%), Gaps = 6/185 (3%)

Query: 34  FETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHG 93
            E E+  K     +   Q    +  Q   +     +                 +  +A G
Sbjct: 117 LEIEERIKAEEAREEAMQDLENEVFQRERTQLELAERTALLRSFIDASPDLIYYR-NADG 175

Query: 94  YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPI 152
                +  + +  G    +++G+   DV       P  +    +         +  L   
Sbjct: 176 VFSGCNRAMEELTGKKEHQLVGLSPWDVYSKEIAQPIVDTDQKVFSDNQAITYEQWLEYP 235

Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212
           +G       +L  +P YS++    G  GFG               ++  +  +       
Sbjct: 236 DGR--KHYFELRKVPFYSKDGRHLGLVGFG--RDITERKRHEESLEKASRDKTTFISTIS 291

Query: 213 GHSSV 217
                
Sbjct: 292 HELRT 296


>gi|311032225|ref|ZP_07710315.1| Signal transduction histidine kinase [Bacillus sp. m3-13]
          Length = 611

 Score =  326 bits (837), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 91/396 (22%), Positives = 174/396 (43%), Gaps = 25/396 (6%)

Query: 426 ENMPQNGIEPEDVDTRINKRKM--EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           + + Q  +   ++  ++ + +   E E  +L S+L   +DG+   +R+G I+  N     
Sbjct: 236 DEIGQLALSFNNLTKKLQEAQATTEGERRKLSSVLSHMTDGVLATDRKGRIILINEPALG 295

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +     E +L KP    L        +  ++E  SL L  + EK          ++    
Sbjct: 296 MLNVSRETVLNKPIVEVLGIEETHSFDQLVSEQESLILDFSTEKEPYILRASNSIIQ--- 352

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
             K+  F +     +HDI+E ++   +              + +F+A VSHE+RTPLT +
Sbjct: 353 --KETGFINGLITVLHDITEQEKIDLE--------------RREFVANVSHELRTPLTTM 396

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
             + E + +  +    +     + +        ++ +VNDLL +SK++S   N +   V 
Sbjct: 397 RSYLEALADGAWQ--DDEIAPRFLDVTQTETERMIRLVNDLLQLSKMDSRDYNFYKNSVD 454

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
             E  ++ I   +  +  +++    S  N    +  D   + Q+  NI+SNA+ ++P GG
Sbjct: 455 FVEFFNKIIERFE-MSKSQKVDFVRSMPNQEVFVSIDTDKITQVLDNIISNAMKYSPEGG 513

Query: 724 QIIISTTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
            I  +        ++++ + D GVG+   +L K  + F ++  ++     GTGLGL +AK
Sbjct: 514 TITFTVDIEEAANQILVSISDQGVGIPKSDLNKIFERFYRVDKARTRMLGGTGLGLAIAK 573

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
            M+ A+ G  +  S   KGT I    P+ +     D
Sbjct: 574 EMIQAHDGDIWASSVEGKGTTIYFTLPISEEEQEGD 609


>gi|309804859|ref|ZP_07698921.1| PAS domain S-box protein [Lactobacillus iners LactinV 09V1-c]
 gi|308165798|gb|EFO68019.1| PAS domain S-box protein [Lactobacillus iners LactinV 09V1-c]
          Length = 593

 Score =  326 bits (837), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 89/394 (22%), Positives = 178/394 (45%), Gaps = 33/394 (8%)

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
           ++  E      I    ++        + E  +L ++L   +DG+   +R G I   N   
Sbjct: 213 DEMGELARAFNILSVRIERSQEVS--DSERRRLDNVLMHMTDGVIATDRHGNITIINETA 270

Query: 482 SKLFGYPVEDILRKPFTVFL--EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
                    ++  +P T  L  ++ T   +     E++      T +++ L +       
Sbjct: 271 LNFLDKTENEVKGEPITQLLGLKEVTIQDLMSTQQELIVTANANTHDELILHAD------ 324

Query: 540 SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
              +I +   F S     +HDI+E ++ +N+              +  F++ VSHE+RTP
Sbjct: 325 -FSLIQRVTGFVSGLICVLHDITEQQKNENE--------------QRQFVSNVSHELRTP 369

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
           LT++  + E + +   G   N     ++   I      ++ ++NDLL++S+++ G + + 
Sbjct: 370 LTSLRAYVEALND---GAWKNENIAPQFLGVIQNETERMIRMINDLLNLSRMDRGVVKMD 426

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRIL---IRTSFANNIPRILADLRSVKQIALNILSNA 715
            E V+L++ +S  ++   +      +    IR  F +    +  D   + Q+  NI++NA
Sbjct: 427 LEWVNLNDFLSHILNRFDMMLKNDGVKKYKIRRIFPHQALWVEIDTDKMMQVIDNIMNNA 486

Query: 716 IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           I ++P GG I I     +++ VIL V D G+G+   +L +    F ++  ++  +  GTG
Sbjct: 487 IKYSPDGGLITIRL-LQTHKHVILSVSDQGLGIPRKDLSRIFDRFYRVDKARSRKQGGTG 545

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           LGL ++K +V+A+ GK +  S+   G+   I  P
Sbjct: 546 LGLAISKEIVEAHHGKIWADSSEGNGSTFYISIP 579


>gi|160882913|ref|ZP_02063916.1| hypothetical protein BACOVA_00875 [Bacteroides ovatus ATCC 8483]
 gi|237722969|ref|ZP_04553450.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
 gi|293372527|ref|ZP_06618909.1| putative CRISPR-associated protein Csc2 [Bacteroides ovatus SD CMC
           3f]
 gi|156111777|gb|EDO13522.1| hypothetical protein BACOVA_00875 [Bacteroides ovatus ATCC 8483]
 gi|229447491|gb|EEO53282.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
 gi|292632336|gb|EFF50932.1| putative CRISPR-associated protein Csc2 [Bacteroides ovatus SD CMC
           3f]
          Length = 785

 Score =  326 bits (837), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 100/521 (19%), Positives = 198/521 (38%), Gaps = 25/521 (4%)

Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDI 360
            L      +          +    +DK       V   G L YAN  F+         ++
Sbjct: 145 VLIMCRDITERVATQRQLEVFKSVLDKVSDSILAVAGDGTLVYANKQFIEEYGVT--QEL 202

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
                   L  +         +   +  +D +  A  A        +E    ++     +
Sbjct: 203 GTQKVYD-LRVSMTDRGAWEKRLQEIRDNDGS-FAYRAAYIPYGHTKERVHQVSAFLIRE 260

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR--EGIILSTN 478
            NQ            +  D    + ++    + L  IL      + + +   +   L  N
Sbjct: 261 NNQE----LIWFFTQDITDVIKKRDELRELNLLLDGILNNIPVYLCVKDPEDDFRYLYWN 316

Query: 479 RAVSKLFGYPVEDILRKPFTVFLE-QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
           +A +   G P    +                      E+L    R  +++  L +  E +
Sbjct: 317 KAFADHSGIPASKAIGHTDYEIFPVHGDAEKFRKDDLELLQTHKRIDMQETYLSANGEAR 376

Query: 538 LLSLRIIIKKLPFSSCY-SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
           ++     +  +            DI+  +  + +L  A+  AE+    KS FLA +SHEI
Sbjct: 377 IVQTLKALVPMEGRKPLLIGISWDITNLQNIEQELIRARIKAEQSDRLKSAFLANMSHEI 436

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTPL AI+GFS+++               Y++ I+++ +++L ++ND+LD+SKIE+G + 
Sbjct: 437 RTPLNAIVGFSQLL----PSAETAEEKKLYSDIINQNSDILLQLINDILDLSKIEAGTLE 492

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716
               P++L E      ++ +    E  + +          +  D   + Q+  N L+NA 
Sbjct: 493 YIKRPMNLGEVCRTIYTVHKERVKE-GVTLVFDNEEEDLLMEGDQNRIMQVITNFLTNAS 551

Query: 717 HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
            FT  G +I         + + + V+DTG+G+   +++   + F ++ +      +GTGL
Sbjct: 552 KFTYEG-EIRFGFGRMDKD-IRVYVKDTGIGIEPEKVDHIFERFVKLNSF----AQGTGL 605

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
           GL + + +++   G+  + S   KG+      P Y+ +  H
Sbjct: 606 GLSICRMIIEKIGGEIGVTSELGKGSTFYFTIP-YEETGEH 645



 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/170 (11%), Positives = 47/170 (27%), Gaps = 22/170 (12%)

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLC-----------------SILEATSDGIAIINREGI 473
             +  +    +    ++  E+  L                   IL++  D + + N+  +
Sbjct: 8   EALLEQLEALKKENEQLRKELSTLRDEKYNDRPVSFKEKYAVRILDSLPDMLTVFNQSEV 67

Query: 474 -ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
            I   +   +   G   +D         +       ++  +   ++     T        
Sbjct: 68  GIEVVSNEETNHVGISNKDFRGMRMQDMVPPEAYQNIHSNMRHAITTGTVSTAHHEL--- 124

Query: 533 TKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES 582
               +       I  L       +   DI+E    + +L   K + +K S
Sbjct: 125 DFNGERHYYENRIFPL-DEEYVLIMCRDITERVATQRQLEVFKSVLDKVS 173



 Score = 40.4 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/140 (13%), Positives = 33/140 (23%), Gaps = 9/140 (6%)

Query: 90  DAHG--YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTWYG 145
           D          ++      G  A K IG    ++  +            +LL+       
Sbjct: 305 DPEDDFRYLYWNKAFADHSGIPASKAIGHTDYEIFPVHGDAEKFRKDDLELLQTHKRIDM 364

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           + T     G    V    A +P+  R     G     I        +      R   K  
Sbjct: 365 QETYLSANGEARIVQTLKALVPMEGRKPLLIG-----ISWDITNLQNIEQELIRARIKAE 419

Query: 206 HLHEIKKGHSSVEKEKYDIF 225
               +K    +    +    
Sbjct: 420 QSDRLKSAFLANMSHEIRTP 439


>gi|163847621|ref|YP_001635665.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222525477|ref|YP_002569948.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
 gi|163668910|gb|ABY35276.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222449356|gb|ACM53622.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
          Length = 523

 Score =  326 bits (837), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 88/376 (23%), Positives = 170/376 (45%), Gaps = 23/376 (6%)

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
            E   L +++E ++DG+ II+    I + N  + +L G+  E+ + +P    L       
Sbjct: 165 REKQHLNALIEQSADGVMIIDGRWRITTFNHTMEQLTGWSREEAIGRPCAEVLGIRNAHG 224

Query: 509 MNHYLTEILSLDLRQTLEKITLG--STKEEKLLSLRIIIKKLPFSSCYSLT----MHDIS 562
           +N  L E            +  G  +T++ + L ++        S    L+    + DI+
Sbjct: 225 VNICLNECPLQRRPDLANPVVEGWITTRDGRDLFIQNRYAPQRGSHGQLLSAIANVRDIT 284

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
             K E+ + +               F++ +SHE+RTP++ I GF+E +     G     +
Sbjct: 285 AQKMEEERQNT--------------FISVISHELRTPVSIIKGFAETMLR-PDGQFTVEQ 329

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
           Y E    I    + +   + DLLD+S+I +G + L    V+L   VS+ +         +
Sbjct: 330 YREALQVISEEADRLARQIQDLLDVSRIAAGGLRLERSDVALHLLVSDVVRRFAAQV-GE 388

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           RI       +++P + AD   ++Q+  N++ NA+ ++P+GG I I       +  I+ V 
Sbjct: 389 RIEFEIRVPDDLPPVYADYERMRQVLTNLIENAVKYSPNGGVIRIGARAE-GDMAIVYVS 447

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G+G+   E +   + F ++    +    G+GLGL + +A+V+A+ G+ ++ S   +G+
Sbjct: 448 DQGIGIPPEEQDLIFERFYRVDTRLRRDQPGSGLGLFITRAIVEAHGGRIWVESQVGRGS 507

Query: 803 LIEIIFPLYDTSHPHD 818
                 PL     P +
Sbjct: 508 RFFFTIPLSRRQLPGE 523



 Score = 47.3 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 31/327 (9%), Positives = 67/327 (20%), Gaps = 12/327 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG---DLLKRQNTWYG 145
           ID    +   +  + +  G    + IG    +V  I +    N       L +R +    
Sbjct: 184 IDGRWRITTFNHTMEQLTGWSREEAIGRPCAEVLGIRNAHGVNICLNECPLQRRPDLANP 243

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
               W        + I     P    + +         V                    S
Sbjct: 244 VVEGWITTRDGRDLFIQNRYAPQRGSHGQL--LSAIANVRDITAQKMEEERQNTFISVIS 301

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
           H             E       Q      R   +V S       +      +   +    
Sbjct: 302 HELRTPVSIIKGFAETMLRPDGQFTVEQYREALQVISEEADRLARQIQDLLDVSRIAAGG 361

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
                     H +  +   +       +   +          +           NL    
Sbjct: 362 LRLERSDVALHLLVSDVVRRFAAQVGERIEFEIRVPDDLPPVYADYERMRQVLTNLIENA 421

Query: 326 VDKCPIPFFVYSHGN------LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
           V   P    +           + Y +   + +   +     E    + T L   +     
Sbjct: 422 VKYSPNGGVIRIGARAEGDMAIVYVSDQGIGIPPEEQDLIFERFYRVDTRLRRDQPGSGL 481

Query: 380 AIKPVM-LYRSDRTCIAASARLHTIQW 405
            +     +  +    I   +++     
Sbjct: 482 GLFITRAIVEAHGGRIWVESQVGRGSR 508


>gi|313885404|ref|ZP_07819154.1| PAS domain S-box protein [Eremococcus coleocola ACS-139-V-Col8]
 gi|312619134|gb|EFR30573.1| PAS domain S-box protein [Eremococcus coleocola ACS-139-V-Col8]
          Length = 618

 Score =  326 bits (837), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 86/453 (18%), Positives = 175/453 (38%), Gaps = 31/453 (6%)

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS-ARLHTIQWNRENSLAMTFIPFEK 420
               +  L     L        +  + S          R   I+        +   P   
Sbjct: 177 QTRDIIQLFLQSVLLAIVIAMTIAFFLSQGLTRPIENIRQQAIRIAEG----VYDYPAHV 232

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
             +         I       +  +   E E  +L  +L    DG+   +R G +   N  
Sbjct: 233 FGKDELGELALTINELADKVKDAQESTESEKQRLDGVLRHMRDGVISTDRRGRVALVNDR 292

Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
              L     E  + K     L+      ++  + E   + + +T++ I      E     
Sbjct: 293 ALYLLNIYQEQAIGKSIVELLDLADDYSVHDLMFEDHEVKIEKTIKDIQTIIKAE----- 347

Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
             +I +   F +     + D++E ++               +  + DF++ VSHE+RTPL
Sbjct: 348 FSVIRRDTGFVTGLVCVLTDVTEQEKT--------------NQERRDFVSNVSHELRTPL 393

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
           T++  +SE + +         +   +   I    N ++ +V++LLD+SKI+ G++ L  +
Sbjct: 394 TSVKSYSEALLDGALQDTSLAQ--PFLEVIQLESNRMIRMVSNLLDLSKIDGGQIILQKD 451

Query: 661 PVSLDEAVSEAISLVQLYAN----EKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716
            V     V   +  ++        +K   I   +      +  D   + Q+  N+++NAI
Sbjct: 452 LVDFKRVVDHIVDRMEFTLESGQRDKNYKIVRHYTPRDIYVDIDQDRMTQVIDNLINNAI 511

Query: 717 HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
            ++P GG+I I     + + VI  V D G+G++  + E   + F ++  ++     G+GL
Sbjct: 512 KYSPDGGKITIGLE-DNRDSVIFSVSDQGLGISQVDAEHLFERFYRVDKARSREQGGSGL 570

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GL ++K +V+ + G+ ++ S   +G+      P
Sbjct: 571 GLAISKEVVELHGGRIWVESIENEGSTFSFELP 603


>gi|206889876|ref|YP_002248033.1| two component system histidine kinase [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206741814|gb|ACI20871.1| two component system histidine kinase [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 618

 Score =  326 bits (837), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 88/247 (35%), Positives = 146/247 (59%), Gaps = 3/247 (1%)

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           K+   +L  AK  AE  +  KS+FLA +SHE+RTPL +IIGF+EV+++Q FG L N + +
Sbjct: 368 KERTAELEIAKIHAEAANRAKSEFLANMSHELRTPLNSIIGFTEVLQDQLFGTL-NEKQL 426

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           EY   I  S   +L+++ND+LD+SKIE GK  L      + + V+ ++ + +  A++  I
Sbjct: 427 EYLKDIHDSAKHLLNLINDILDLSKIEEGKTELELSEFRVSDVVNVSLIMFKEKASKHGI 486

Query: 685 LIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
            +    +      + AD R +KQ+  N++SNA+ FTP GG + I+     +  + + V D
Sbjct: 487 KLDAEISKEADITVTADERKIKQVLFNLVSNAVKFTPDGGSVKITAERKED-MIEIVVED 545

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TG+G+   + +K  +PF Q+  +   + +GTGLGL L+K++V+ + GK +  S   KG+ 
Sbjct: 546 TGIGIKKEDRDKLFQPFSQLETTYTKKYQGTGLGLALSKSLVELHGGKIWCESEYGKGSR 605

Query: 804 IEIIFPL 810
               FP+
Sbjct: 606 FGFSFPV 612


>gi|153840375|ref|ZP_01993042.1| aerobic respiration control sensor protein ArcB [Vibrio
           parahaemolyticus AQ3810]
 gi|149745962|gb|EDM57092.1| aerobic respiration control sensor protein ArcB [Vibrio
           parahaemolyticus AQ3810]
          Length = 683

 Score =  326 bits (837), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 89/406 (21%), Positives = 175/406 (43%), Gaps = 19/406 (4%)

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
               +         +E E       + ++      L S ++A+ D I   N +G+    N
Sbjct: 22  RIKAEEAREEAMQDLENEVFQRERTQLELAERTALLRSFIDASPDLIYYRNADGVFSGCN 81

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
           RA+ +L G     ++         +     +     ++ S +   T E+        +  
Sbjct: 82  RAMEELTGKKEHQLVGLSPWDVYSKEIAQPIVDTDQKVFSDNQAITYEQWLEYPDGRKHY 141

Query: 539 LSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
             LR +                 DI+E K+ +  L       EK S  K+ F++ +SHE+
Sbjct: 142 FELRKVPFYSKDGRHLGLVGFGRDITERKRHEESL-------EKASRDKTTFISTISHEL 194

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTPL  I+G S ++ + +          ++   I+ S   + +I ND++D+ K +  K+ 
Sbjct: 195 RTPLNGIVGLSRMLLDSQL----TEEQRKHMQTINVSAITLGNIFNDIIDMDKFDRRKLE 250

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNA 715
           L   P++ ++ V+E  S+  L A +K +       +++P+ I  D   ++Q+  N++SNA
Sbjct: 251 LLPAPLNFEDFVAEIESISALMAEQKGLRFDLERLSDLPKAIEVDATRLRQVIWNLVSNA 310

Query: 716 IHFTPSGGQI-IISTTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGE 772
           + FT  GG +  +S     +   +I+ V DTG+G+   EL+K    + Q+ + +      
Sbjct: 311 MKFTKEGGVVMTVSADVEEDFATIIMEVEDTGIGIPEAELDKIFAMYYQVKSGKDNLHAV 370

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF--PLYDTSHP 816
           GTG+GL ++K +++   G   + S    G+   +    P+ +   P
Sbjct: 371 GTGIGLAVSKQLINMMDGDITVTSEEGFGSTFTVSIHVPIVELEEP 416



 Score = 48.1 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/185 (11%), Positives = 48/185 (25%), Gaps = 6/185 (3%)

Query: 34  FETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHG 93
            E E+  K     +   Q    +  Q   +     +                 +  +A G
Sbjct: 17  LEIEERIKAEEAREEAMQDLENEVFQRERTQLELAERTALLRSFIDASPDLIYYR-NADG 75

Query: 94  YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPI 152
                +  + +  G    +++G+   DV       P  +    +         +  L   
Sbjct: 76  VFSGCNRAMEELTGKKEHQLVGLSPWDVYSKEIAQPIVDTDQKVFSDNQAITYEQWLEYP 135

Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212
           +G       +L  +P YS++    G  GFG               ++  +  +       
Sbjct: 136 DGR--KHYFELRKVPFYSKDGRHLGLVGFG--RDITERKRHEESLEKASRDKTTFISTIS 191

Query: 213 GHSSV 217
                
Sbjct: 192 HELRT 196


>gi|153834480|ref|ZP_01987147.1| aerobic respiration control sensor protein ArcB [Vibrio harveyi
           HY01]
 gi|148869116|gb|EDL68152.1| aerobic respiration control sensor protein ArcB [Vibrio harveyi
           HY01]
          Length = 786

 Score =  326 bits (837), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 88/405 (21%), Positives = 176/405 (43%), Gaps = 19/405 (4%)

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
               +         +E E       + ++      L S ++A+ D I   N +G+    N
Sbjct: 122 RIKAEEAREEAMQDLENEVFQRERTQLELAERTALLRSFIDASPDLIYYRNADGVFSGCN 181

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
           RA+ +L G     ++         +     +     ++ + +   T E+        +  
Sbjct: 182 RAMEELTGKKEHQLVGLSPWDVYSKEVAEHIVDTDQKVFADNQAITYEQWLEYPDGRKHY 241

Query: 539 LSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
             LR +                 DI+E K+ +  L       EK S  K+ F++ +SHE+
Sbjct: 242 FELRKVPFYSKDGRHLGLVGFGRDITERKRHEESL-------EKASRDKTTFISTISHEL 294

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTPL  I+G S ++ + +          ++   I+ S   + +I ND++D+ K +  K+ 
Sbjct: 295 RTPLNGIVGLSRMLLDSQL----TEEQRKHMQTINVSAITLGNIFNDIIDMDKFDRRKLE 350

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNA 715
           L   P++ ++ V+E  S+  L A +K +       +++P+ I  D   ++Q+  N++SNA
Sbjct: 351 LLPAPLNFEDFVAEIESISALMAEQKGLRFDLERLSSLPKAIEVDATRLRQVIWNLVSNA 410

Query: 716 IHFTPSGGQI-IISTTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGE 772
           + FT  GG +  +S     +   +I+ V DTG+G+ + EL+K    + Q+ + +      
Sbjct: 411 MKFTKEGGVVMTVSADVEDDYATIIMEVEDTGIGIPDEELDKIFAMYYQVKSGKDNLHAV 470

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF--PLYDTSH 815
           GTG+GL ++K +++   G   + S    G+   +    P+ D + 
Sbjct: 471 GTGIGLAVSKQLINMMDGDITVASEEGFGSTFTVSIHVPIVDLAE 515



 Score = 47.3 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 16/129 (12%), Positives = 37/129 (28%), Gaps = 5/129 (3%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID-PNNHIGDLLKRQNTWYGKTT 148
           +A G     +  + +  G    +++G+   DV      +   +    +         +  
Sbjct: 172 NADGVFSGCNRAMEELTGKKEHQLVGLSPWDVYSKEVAEHIVDTDQKVFADNQAITYEQW 231

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           L   +G       +L  +P YS++    G  GFG               ++  +  +   
Sbjct: 232 LEYPDGR--KHYFELRKVPFYSKDGRHLGLVGFG--RDITERKRHEESLEKASRDKTTFI 287

Query: 209 EIKKGHSSV 217
                    
Sbjct: 288 STISHELRT 296


>gi|254457203|ref|ZP_05070631.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Campylobacterales
           bacterium GD 1]
 gi|207085995|gb|EDZ63279.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Campylobacterales
           bacterium GD 1]
          Length = 740

 Score =  326 bits (837), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 90/431 (20%), Positives = 187/431 (43%), Gaps = 32/431 (7%)

Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450
           R  +     +   +   +       +    +      +    +       +    +++ +
Sbjct: 195 RGVLEVIIPVQEQRKRYDTITDYINLTLIISGFLLVILIFIVVTYFTNLEKKRLEQLKEK 254

Query: 451 VMQLCSILEATSDGIAI--INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
             +L   +++    +     +  G I   ++A   + GY  E+++ +   +    + P  
Sbjct: 255 QYKLNKSVKSFGQNVIASNTDLNGFITYASKAFCDISGYSEEELMGRSHNLIRHPDMPQE 314

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEW 564
           +   + + +     +T E       K  +   +R  I      +     YS   HDI+  
Sbjct: 315 LYKEMWKSIKSG--ETWEGDIKNKNKAGEFYWVRSTIFPDYNYNKKLIGYSSIRHDITAQ 372

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           K                   K +F + +SHE+RTPL AI+GF  ++  Q    + + +++
Sbjct: 373 K------------------AKEEFFSNMSHELRTPLNAILGFLNILNKQ----ISDKKHL 410

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           EY  ++  S   +L+++ND+LD++KI++G+  +     +  E + +     +    +K I
Sbjct: 411 EYLRHVGTSSKQLLNLINDILDLAKIKTGEFTVDAHEFNAYEELKDYAQQFEGMLIDKNI 470

Query: 685 LIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
            +++  ++++  + + DL  + QI LN+LSNAI FTP GG I +   +    +  + V+D
Sbjct: 471 SLKSHISHDLKGVFIGDLFRISQIILNLLSNAIKFTPDGGTISLYIDYKEE-KFSIVVQD 529

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TG+GM+    +K  KPF Q   S   +  GTGLGL + + +++   GK  + S   KG+ 
Sbjct: 530 TGIGMSPDVQDKIFKPFVQADGSTTRKYGGTGLGLSITQKLIELMNGKLILESQEGKGST 589

Query: 804 IEIIFPLYDTS 814
            ++  P+   S
Sbjct: 590 FKVKIPMQKIS 600



 Score = 57.3 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 17/108 (15%), Positives = 33/108 (30%), Gaps = 5/108 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147
            D +G++   S+      G    +++G     +            +   +K   TW G  
Sbjct: 274 TDLNGFITYASKAFCDISGYSEEELMGRSHNLIRHPDMPQELYKEMWKSIKSGETWEGDI 333

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA 195
                 G   +V   +   P Y+ N++  G+    I H          
Sbjct: 334 KNKNKAGEFYWVRSTIF--PDYNYNKKLIGYS--SIRHDITAQKAKEE 377


>gi|186682598|ref|YP_001865794.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC
           73102]
 gi|186465050|gb|ACC80851.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC
           73102]
          Length = 657

 Score =  326 bits (837), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 111/509 (21%), Positives = 198/509 (38%), Gaps = 38/509 (7%)

Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST--------LLDAPKLSDNNAIKPV 384
             V  +    Y     L    +  V+      GL          ++   KL D +  +  
Sbjct: 9   LHVDDNEANRYIVARILQNAGFTVVEAATGVAGLKAATEHQPTLVILDVKLPDISGFEVC 68

Query: 385 MLYRSDRTC--IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
              +++     I       +   +++ +  +         Q  E +         +  R 
Sbjct: 69  RQIKANPETAFIPVLHLSASFVQSQDKAEGLDSGADAYLVQPVEPIELLATVRSLLRIRR 128

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            +        +  S  ++  DG+ +++ +GIIL  N A++++F  P  +IL       + 
Sbjct: 129 AEEAALSSAREWQSTFDSIKDGVCLVDTKGIILRCNLAITQIFCKPSHEILGCAHHNLMA 188

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
                              RQ LE  +      + +  +      L         + DI+
Sbjct: 189 AELGIGDGTCFRRAKETHQRQVLEFQSTERWFAKTIDPVLDEHGTLT---GAVFILSDIT 245

Query: 563 EWKQEKNKLSHAKKIAEKE--------------SSHKSDFLARVSHEIRTPLTAIIGFSE 608
           E K+    L        +               +  K +FLA +SHE+R+PL  I+G+++
Sbjct: 246 ERKRASALLQEQNDRLNQLMISLQQQTEQAQQANRIKDEFLAVLSHELRSPLNPILGWAK 305

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
           +++  R       +       I+R+  L   ++ DLLD+S+I  GK++L+  PV L   +
Sbjct: 306 ILQTSRQDA---AKTQYALETIERNAKLQAQLIEDLLDVSRILQGKLSLNTVPVGLTFTI 362

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
             A+  V+L A  K I I+T F  N  ++L D   ++Q+  N+LSNAI FTP GGQ+ + 
Sbjct: 363 KAALETVRLAAEAKSIQIQTIFEPNAGQVLGDSGRLQQVVWNLLSNAIKFTPQGGQVEVR 422

Query: 729 TTHTSN-------EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
                N       E   + V DTG+G++   L      F Q   +   R  G GLGL + 
Sbjct: 423 LERIENELDTHPSEYTQISVSDTGMGISADFLPYVFDYFRQADGTTTRRFGGLGLGLAIV 482

Query: 782 KAMVDANMGKFYIFS-TPAKGTLIEIIFP 809
           + +V+ + G     S    +G    + FP
Sbjct: 483 RHLVELHGGSIQAASPGEGQGATFTVKFP 511


>gi|144899922|emb|CAM76786.1| Signal transduction histidine kinase [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 830

 Score =  326 bits (837), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 190/821 (23%), Positives = 314/821 (38%), Gaps = 108/821 (13%)

Query: 51  QSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYA 110
           Q++FT     + S      +  +  F P  + V         G L E+S      + +  
Sbjct: 51  QNHFTYTAFLAASAPVSDLAGQSLRFSPTEKPV--------DGLLSELS-----LLHDPI 97

Query: 111 FKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYS 170
            +       D+S +  ID N+ I  L+             P  G   +V    AALP+ +
Sbjct: 98  SR------ADISFLAVIDGNSRIRRLMSDGAHP-------PPAGLQDFV----AALPVNA 140

Query: 171 RNREFSGFRGFGI-VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS 229
            +R      G  + V         RA    L +  S L     G +        I     
Sbjct: 141 AHRAIVQRLGGDVYVVSVHAIAGQRASLVVLTRWDSGLLTRAHGFAPGSDLTVAIADMFH 200

Query: 230 PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYF 289
                     V ++       +         L             F TI  + Y  +Q  
Sbjct: 201 GVVAASSDPAVIAMGLPLIRLETDWLAVYQELPDHGGIDF--LPAFVTIVSHAYADRQAE 258

Query: 290 GTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFL 349
             L+   ++    L+                   + +D+  +      +G    A     
Sbjct: 259 PLLRQEREQRT-VLAATLIGLFLLVLVVVALRLRQIIDQVAL-VIESVNGKQEPAFKGGD 316

Query: 350 LLTKY------------KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR--------- 388
            L               +S   ++        L+  ++        + L +         
Sbjct: 317 ELLGLVRQVHTLATEVRRSRQALQSEAAEKMRLNEERILVREENARLRLLQTVTDLLRVG 376

Query: 389 --SDRTCIAA-SARLHT------------IQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
                        R               +Q +   S  +  +    A +  E +  +GI
Sbjct: 377 VVRLGHDGPVAENRAMEEMSQTCGGLSPFVQASNRGSQDLVALDTHGAERIYELLSADGI 436

Query: 434 EPED--VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
           + +   V     +R+ E  +  L      +   +  I  +G IL  N A   L       
Sbjct: 437 DHDLILVTEVTEQRRAEQMIHSLALFPAQSPYPVLRIGIDGAILHANPASEPLL------ 490

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
                +   + +  P   +  +TE+L+   +   E   +G         L + +  +  +
Sbjct: 491 ---SEWATGMGRKVPDEWHGIITEVLATGRQLQAELPVIGRV-------LSLTLVPVKGA 540

Query: 552 SCYSLTMHDISEWKQEKNKLS------------------HAKKIAEKESSHKSDFLARVS 593
              ++   D+S+    + +L+                   AK+ AE  S  KS+FLA +S
Sbjct: 541 GYVNIYATDVSDRVAAERQLADANEDLERRVEERTRDLVRAKEQAELASRSKSEFLATIS 600

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HE+RTPL AIIGFSEV+    FGPLGN RY EYA  I +SG  +L ++ND+LD+SKIE+G
Sbjct: 601 HELRTPLNAIIGFSEVMAGSMFGPLGNSRYQEYAGDIVQSGRHLLAVINDILDVSKIEAG 660

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713
           +M+L F PV +   +  A+ LV+  A    + +R+    ++P I  D R   QI +N+LS
Sbjct: 661 QMSLDFGPVDIPPVIDSAVRLVETRARANSLRLRSEVDKDLPIIDGDRRRCLQILVNLLS 720

Query: 714 NAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
           NAI FTP GGQ+ I  +  ++  + L+V+DTG+GM+  E++ A++PF Q+  S   + EG
Sbjct: 721 NAIKFTPEGGQVTIGASRENDG-IRLKVQDTGIGMSESEIQVALEPFRQVDGSLSRQYEG 779

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           TGLGLPLAK+MV+ + G   + S   +GT +    PL   S
Sbjct: 780 TGLGLPLAKSMVELHGGSLVVNSRKGEGTEVAFWLPLNQNS 820


>gi|17231477|ref|NP_488025.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17133120|dbj|BAB75684.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 614

 Score =  326 bits (837), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 97/432 (22%), Positives = 179/432 (41%), Gaps = 33/432 (7%)

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII 474
                  N   E      I  E  + + ++  ++  +  L   ++ T   +   +    +
Sbjct: 46  VHVLPVRNDDGEIFAGMTITQEITERKQSELALQNALQLLNLHIDTTPLAVVQWDCHLCV 105

Query: 475 LSTNRAVSKLFGYPVEDILRKPF--TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
              + A  K+FG+  E+++ K       + +   + +      +LS    Q ++      
Sbjct: 106 TRWSSAAEKIFGWLAEEVIGKYIQDLHIVYEEDMTAVAEVSDRLLSGQEAQIIQY-NRNY 164

Query: 533 TKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHA-------------- 574
           TK+ +++        +             + D++E  Q +  L  +              
Sbjct: 165 TKDGRVIYCEWYNSSITNEEGSVTSVLSLVLDVTERIQAEKALRQSELMVTEERAQALER 224

Query: 575 ----KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
               +   E+ S  K +FLA VSHE+R+PL  I+G+S +++ ++  P    +  +    I
Sbjct: 225 ERAARIELERASRMKDEFLAIVSHELRSPLNGILGWSRLLRTRKLSP---EKIEQALESI 281

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
           +R+      ++ DLLDIS+I  G + L   P  L   +  A+  V+  AN K I I +  
Sbjct: 282 ERNAQAQTQLIEDLLDISRIIRGNIRLLVRPTKLIPVIQAALDTVRPIANTKSIQIISRL 341

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
             +I  + AD   ++Q+  N+LSNA+ FTP GG++ I         V ++V DTG G++ 
Sbjct: 342 NFDIGLVSADPERLQQVIWNLLSNAVKFTPEGGRVEICLEQVETN-VQIQVIDTGTGISP 400

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFP 809
             L      F Q   +      G GLGL + + +V+ + GK  + S    +G    +  P
Sbjct: 401 EFLPYVFDRFRQADATTTRNQGGLGLGLAIVRNLVELHNGKVSVASPGEGQGATFTVQLP 460

Query: 810 L---YDTSHPHD 818
           L   Y T  P +
Sbjct: 461 LLATYSTLTPEE 472


>gi|269960268|ref|ZP_06174643.1| Aerobic respiration control sensor protein ArcB [Vibrio harveyi
           1DA3]
 gi|269835075|gb|EEZ89159.1| Aerobic respiration control sensor protein ArcB [Vibrio harveyi
           1DA3]
          Length = 786

 Score =  326 bits (837), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 88/406 (21%), Positives = 176/406 (43%), Gaps = 19/406 (4%)

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
               +         +E E       + ++      L S ++A+ D I   N +G+    N
Sbjct: 122 RIKAEEAREEAMQDLENEVFQRERTQLELAERTALLRSFIDASPDLIYYRNADGVFSGCN 181

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
           RA+ +L G     ++         +     +     ++ + +   T E+        +  
Sbjct: 182 RAMEELTGKKEHQLVGLSPWDVYSKEVAEHIVDTDQKVFADNQAITYEQWLEYPDGRKHY 241

Query: 539 LSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
             LR +                 DI+E K+ +  L       EK S  K+ F++ +SHE+
Sbjct: 242 FELRKVPFYSKDGRHLGLVGFGRDITERKRHEESL-------EKASRDKTTFISTISHEL 294

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTPL  I+G S ++ + +          ++   I+ S   + +I ND++D+ K +  K+ 
Sbjct: 295 RTPLNGIVGLSRMLLDSQL----TDEQRKHMQTINVSAITLGNIFNDIIDMDKFDRRKLE 350

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNA 715
           L   P++ ++ V+E  S+  L A +K +       +++P+ I  D   ++Q+  N++SNA
Sbjct: 351 LLPAPLNFEDFVAEIESISALMAEQKGLRFDLERLSSLPKAIEVDATRLRQVIWNLVSNA 410

Query: 716 IHFTPSGGQI-IISTTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGE 772
           + FT  GG +  +S     +   +I+ V DTG+G+ + EL+K    + Q+ + +      
Sbjct: 411 MKFTKEGGVVMTVSADVEEDYATIIMEVEDTGIGIPDEELDKIFAMYYQVKSGKDNLHAV 470

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF--PLYDTSHP 816
           GTG+GL ++K +++   G   + S    G+   +    P+ +   P
Sbjct: 471 GTGIGLAVSKQLINMMDGDITVASEEGFGSTFTVSIHVPIVELEEP 516



 Score = 47.3 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 16/129 (12%), Positives = 37/129 (28%), Gaps = 5/129 (3%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID-PNNHIGDLLKRQNTWYGKTT 148
           +A G     +  + +  G    +++G+   DV      +   +    +         +  
Sbjct: 172 NADGVFSGCNRAMEELTGKKEHQLVGLSPWDVYSKEVAEHIVDTDQKVFADNQAITYEQW 231

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           L   +G       +L  +P YS++    G  GFG               ++  +  +   
Sbjct: 232 LEYPDGR--KHYFELRKVPFYSKDGRHLGLVGFG--RDITERKRHEESLEKASRDKTTFI 287

Query: 209 EIKKGHSSV 217
                    
Sbjct: 288 STISHELRT 296


>gi|116332710|ref|YP_794237.1| Signal transduction histidine kinase [Lactobacillus brevis ATCC
           367]
 gi|116098057|gb|ABJ63206.1| PAS/PAC sensor signal transduction histidine kinase [Lactobacillus
           brevis ATCC 367]
          Length = 618

 Score =  326 bits (837), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 78/400 (19%), Positives = 160/400 (40%), Gaps = 33/400 (8%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
                        + +    V     +   E E  +L S++   +DG+   +R G +   
Sbjct: 230 VHVYGNDELGQLASAVNNLSVRVEEAQESTESERRRLDSVMAHMTDGVIATDRRGNVTII 289

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
           N   S    +  +D + K     L+      +   L +         L         +  
Sbjct: 290 NETASSFLDHEPDDAVGKSILDLLDIRDDYTLRELLED------PDDLVLDFSTKEHD-L 342

Query: 538 LLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
           +L     + +      S     +HD++E ++                  + +F++ VSHE
Sbjct: 343 ILQAYFSLIQRESGFISGLVCVLHDVTEQQKI--------------DQARREFVSNVSHE 388

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           +RTPLT++  + E +     G   +P+   ++        + ++ ++NDLL +S+++SG 
Sbjct: 389 LRTPLTSVRSYIEALSE---GAWKDPKVAPDFLKVTQEETDRMIRMINDLLTLSRMDSGT 445

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYAN-----EKRILIRTSFANNIPRILADLRSVKQIAL 709
             +  E V+L+E  +  +    +        EK   I+  F      +  D     Q+  
Sbjct: 446 QKVDLEMVNLNELFNYVLDRFDMMLKQDDQPEKTYTIKRDFTKRDLWVEIDTDRFTQVLD 505

Query: 710 NILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
           N+++NAI ++P GG +       ++  VIL V D G+G+   ++ +    F ++  ++  
Sbjct: 506 NLMNNAIKYSPDGGVVTARL-LETHNNVILSVSDQGLGIPRADIPRIFDRFYRVDKARSR 564

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
              GTGLGL +++ +V    G+ ++ S   +G+   I  P
Sbjct: 565 AQGGTGLGLAISREVVQMLGGRIWVDSREGRGSTFYISLP 604


>gi|163790939|ref|ZP_02185362.1| histidine protein kinase; sensor protein [Carnobacterium sp. AT7]
 gi|159873781|gb|EDP67862.1| histidine protein kinase; sensor protein [Carnobacterium sp. AT7]
          Length = 614

 Score =  326 bits (836), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 92/459 (20%), Positives = 180/459 (39%), Gaps = 32/459 (6%)

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA-SARLHTIQWNRENSLAMTF 415
               E    ++ +     L        + L+ S             TIQ    +      
Sbjct: 172 ESVYEQISEITLIFLNSSLVAVAVTVILALFISRAITKPITEMTQQTIQMADGDYSGQ-- 229

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
              +  ++    +    I          +   E E  +L S+L   +DG+   +R GII+
Sbjct: 230 --VKVYSKDELGILSTAINDLSTKVEEAQETTESERRRLNSVLTHMTDGVIATDRRGIII 287

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
             N    ++     E  L       L+ +    +   L      D+        +  T  
Sbjct: 288 IINDKAMEMLNISQEMALGVSILKVLKIDKEYTLRKLLEN--EDDMLFDFSTEEMLVTLR 345

Query: 536 EKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
            +     +I ++  F S     +HD+++ ++ +N+              + +F++ VSHE
Sbjct: 346 GEF---TLIQRETGFISGIVCVLHDVTKQEKIENE--------------RKEFVSNVSHE 388

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           +RTPLT++  + E + +  +         ++        + ++ ++ DLL++S+++S K 
Sbjct: 389 LRTPLTSMRSYLEALLDGAW--KDPEIAPQFLEVTQEETDRMIRMIKDLLELSRMDSNKS 446

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANE-----KRILIRTSFANNIPRILADLRSVKQIALN 710
            L  E ++++E     I   ++         K   I+  F  +   +  D   + Q+  N
Sbjct: 447 VLDLEYLNVNELFDHVIKRFEMMLQSSDKTMKEFSIKREFTKSQLWVEVDADKMIQVLDN 506

Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           I++NAI ++P GG I       +N  VI  + D G+G+   +L      F ++  ++   
Sbjct: 507 IMNNAIKYSPDGGTITCGL-VETNTSVIFSISDEGLGIPKRDLANVFDRFFRVDKARARS 565

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             GTGLGL ++K +V  + GK +  ST  KGT   I  P
Sbjct: 566 MGGTGLGLAISKEVVQKHKGKIWAESTEGKGTTFYISLP 604


>gi|153953972|ref|YP_001394737.1| PhoR [Clostridium kluyveri DSM 555]
 gi|219854586|ref|YP_002471708.1| hypothetical protein CKR_1243 [Clostridium kluyveri NBRC 12016]
 gi|146346853|gb|EDK33389.1| PhoR [Clostridium kluyveri DSM 555]
 gi|219568310|dbj|BAH06294.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 575

 Score =  326 bits (836), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 81/359 (22%), Positives = 158/359 (44%), Gaps = 30/359 (8%)

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
            +L +IL++  +G+  ++    I+  N    K+FG   + I         +     +   
Sbjct: 237 NKLEAILKSMDNGVIAVDTSYKIIMINPYAKKIFGISKDVIGENLMDSIRDFELEDIFKS 296

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571
              E   + + +  E+     T           I            + DI++ K+ +   
Sbjct: 297 VKKEYKEIRILRPKERDLRIKT---------DYIINSNEKIGIVAVVQDITDIKRLE--- 344

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
                      + +S F+A VSHE++TPLT+I GF+E +K             ++ N ID
Sbjct: 345 -----------NMRSQFVANVSHELKTPLTSIKGFAETLK----YVEDVENRNKFLNIID 389

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
                +  ++ND+L +S IES +M+   E + ++  + +   +++ +A++K I      +
Sbjct: 390 DEAERLTRLINDILTLSHIESNEMD-KIEFIDINGIIDDVCYMMKPFADKKHIK-IKKIS 447

Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751
             +P I  D    KQ+ +N++ NAI +T +GG + + T    N+ + + V D GVG++  
Sbjct: 448 CEMPDIWGDADRFKQMVINLVDNAIKYTNNGGWVKVGTAFQENDCL-IWVEDNGVGISKE 506

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             E+  + F ++  ++     GTGLGL + K +     G   + S   KG+   +  P+
Sbjct: 507 HQERLFERFYRVDKARSRSQGGTGLGLAIVKHITLKFSGTIELNSEIGKGSKFTVRIPI 565


>gi|298488282|ref|ZP_07006315.1| Signal transduction histidine kinase [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298157221|gb|EFH98308.1| Signal transduction histidine kinase [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 1200

 Score =  326 bits (836), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 125/749 (16%), Positives = 264/749 (35%), Gaps = 47/749 (6%)

Query: 75  VFDPIPRTVRFTWNI-DAHGYL-KEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH 132
            F+     V F++ + D    L   I+  L     +   +++G         L  D    
Sbjct: 239 KFESRLPPVGFSFAVRDDEQRLLTFINRALDSIEPSIGREVLGR-WTM---GLGADVEGQ 294

Query: 133 IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIY-SRNREFSGFRGFGIVHVNRVDN 191
              L        G    W ++  ++ +        IY  +N ++ G     +  ++R+  
Sbjct: 295 RIRL-------TGAERRWLLKHPSVTIATTQHPPYIYKDKNGQWVGLNADVLSRISRM-T 346

Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD 251
             + + + +      +  ++ G + +     +   ++     L         +  +  + 
Sbjct: 347 GLQFVHQEVPSTQQSIEMLRAGLAEMNTSLAENAERRR---FLDFTYSFGGNSWMFVVRS 403

Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
           +         L  +  +LP +                   L++  +     +  R   + 
Sbjct: 404 ERSSRVSLDSLAGKVLALPARH-----------------ALEDLIRREHPLIQLRLLDTY 446

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
                  E+   +   +  +  +++  G L  A  S            I+    L  +L+
Sbjct: 447 DQARALVESGVADATIQNEVGAYLFPAGQLKVA-RSVDGQWSPDRFSVIKTQPELLGILN 505

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
                   A    +  +   + +          W R        +           +  +
Sbjct: 506 KALEEFPVAELRSIRLKWLGSALP-----QPSLWGRIPQWVFWVLALALLTGLVSLVWSS 560

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
            ++ +       +R++  ++    ++ +   + I + + +G ++S NR+  +  G   E 
Sbjct: 561 RLKVQIRQRLKAERQLNDQLAFKHALFDGIPNPIYVRDLKGRLISCNRSYEQSLGISFEQ 620

Query: 492 ILRKPFT--VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
           +  +  T    + +     M+     +L        ++    S K   +    +      
Sbjct: 621 MNGRRLTDVNLIPRALAEQMHTDYLNLLENHQPVFSDRTIELSGKRMDVWQWTVPFFAAD 680

Query: 550 FS-SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                      DI+E K+ + +L  A ++A + +  KS FLA +SHEIRTP+ AIIG  E
Sbjct: 681 GQLQGLLGGWVDITERKRLEQQLQEAMRLAAQANEAKSVFLASMSHEIRTPMGAIIGLLE 740

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
           +           P          RS   ++ ++ + LD+++IE+G M L     SL    
Sbjct: 741 LECAHALRKGHTPSQG--LQVAHRSATELVALIGESLDLARIEAGGMQLSLTVTSLQALF 798

Query: 669 SEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIII 727
              I L    A EK + +R  F+         D   ++Q+  N+L NA+ FT  G  ++ 
Sbjct: 799 EGVIELFSAQAREKDLELRLEFSEQAQGDYWLDPLRLRQVLHNVLGNALKFTRQGSVVLR 858

Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
                 +  V + ++D+G G+     ++  +PF Q  +       G+GLGL + + +V  
Sbjct: 859 VAALDDSSRVRIGIQDSGEGIEPERQQQIFQPFTQASDDTAAHYGGSGLGLSITRQLVQL 918

Query: 788 NMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
             G   + S+P +GTL+ I  PL   S P
Sbjct: 919 MKGDISLHSSPGEGTLVNIDLPLVRVSEP 947


>gi|256829408|ref|YP_003158136.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256578584|gb|ACU89720.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 1070

 Score =  326 bits (836), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 126/791 (15%), Positives = 257/791 (32%), Gaps = 85/791 (10%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG--DLLKRQNTW 143
            +     G    ++  + K +       +   + D+   L+ DP +     +LL+     
Sbjct: 153 IYQSTPGGTFLSVNASMAKILRYDDPADLMASIKDIGHDLYADPCDRKRYMELLEEHIRV 212

Query: 144 YG-KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
            G +T +   +G+   + + L +  I             G +                D+
Sbjct: 213 MGFETQVRRKDGSL--IWVTLNSTLIRDAGANRPCL--IGTMEDISTRKRFELSLIESDQ 268

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQS-----------------------PPPHLRMKNK 239
           +F +L +     +     +  I                            P       ++
Sbjct: 269 RFRNLLQQISCIAVSLDNQSRIVFSNPFLHQLTGWSEAELNGQNWFDVFLPAGQRETMSR 328

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQED---------------FHTINLNQYT 284
           V +     A         +          +                       I   +  
Sbjct: 329 VLTPHPTAATHGSESMDTEIRTRQGALRLIRWNTVPDINVQGEIIGVTCLGVDITAIRMA 388

Query: 285 KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV--------- 335
           +     + Q +S       +  + P  +        +  E +D   +   +         
Sbjct: 389 RDTLSKSAQMHSMRLRIDDAAHSTPDFATLMRTVHEILGEVIDAKNLITALINTDKNSLE 448

Query: 336 --YSHGNLFYANPSFLLLTKYKSVD-----DIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388
             Y    +   + +   +      +        + G +  +L +  ++       + L  
Sbjct: 449 FPYWVDEMTDVSEAAPRIDDLNDPENRRLTLELLRGNIPNILSSSDMTALAEAGKIRLVG 508

Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
                          +      +     P        + + +   +      R    ++ 
Sbjct: 509 VIPQSWMGVPLKVRGKGIGALIVQNYATPKHYTRNDLDILLEVSEQIALAIERQRHDELS 568

Query: 449 IEVMQLCSILEATSDGIAII-----NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
               +   I      G+ I      + + I+ S N A  +L    +E+     FT     
Sbjct: 569 QTAEE---IFHDIPSGLFIYKYREPD-QLILESANPAALRLIDKRLEEARGTLFTDIWP- 623

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
              + +       L        E       +      +             ++   D++E
Sbjct: 624 --RATLQSNYLRCLHTKEPFDKEAHLYEDERIRGYFRIHAFPLP---GEKVAVAFEDVTE 678

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            +Q +  L  AK+IAE  +  KS+FLA +SHE+RTPL  I+G  ++       P      
Sbjct: 679 RQQVQQALVRAKEIAESANRAKSEFLANISHEVRTPLNGIMGMLQLAMQSEVPP----EL 734

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            +Y      S   +L ++ND+LD +K+++GKM +     SLD+ +S+A++  +  A +K+
Sbjct: 735 EDYIRTALESSRNLLRVLNDVLDFTKVDAGKMEIVDRDFSLDDLLSQAVNFFRALAMDKK 794

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST----THTSNEEVIL 739
           I +  S   +I R + D   ++QI  N++ NA+ FT +G  + +             ++ 
Sbjct: 795 ISLVLSAPRDIGRFVGDEGRLRQILFNLMGNALKFTDTGS-VTLEAWPVGEQGDATRILF 853

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            VRD G+G+   +L    + F Q+  +   R +GTGLGLP+ K +V    G   + S   
Sbjct: 854 AVRDEGIGIPTDKLGYVFESFTQVDGTYSRRYQGTGLGLPIVKRLVTLMGGNISVESMEG 913

Query: 800 KGTLIEIIFPL 810
           +GT I  + PL
Sbjct: 914 EGTTIFFVLPL 924



 Score =  103 bits (258), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 50/515 (9%), Positives = 139/515 (26%), Gaps = 34/515 (6%)

Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255
             +R     S  H+   G +    E+Y +           +   +  L      +     
Sbjct: 16  RAQRHAGIGSFEHDFSSGATFWSDEQYRLLGFSPDETLPSLDRFLELLDPRDRDRFLRKV 75

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
              +       + +        +   Q   +            S  +       ++ +  
Sbjct: 76  GVCFTKRRELRTEVRYTPKSGKLRTAQIRAEFEPDESGRIRVISGTFQDVTERRAVQSAL 135

Query: 316 DEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
            + E       +      +     G     N S   + +Y    D+     +  +     
Sbjct: 136 RQSEAGYRTIFENALEGIYQSTPGGTFLSVNASMAKILRYDDPADL--MASIKDIGHDLY 193

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
               +  + + L       +        ++    + + +T       +         G  
Sbjct: 194 ADPCDRKRYMELLEEHIRVMGFE---TQVRRKDGSLIWVTLNSTLIRDAGANRPCLIGTM 250

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
            +    +  +  +     +  ++L+  S     ++ +  I+ +N  + +L G+   ++  
Sbjct: 251 EDISTRKRFELSLIESDQRFRNLLQQISCIAVSLDNQSRIVFSNPFLHQLTGWSEAELNG 310

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE-KITLGSTKEEKLLSLRIIIKKLPFSSC 553
           + +               +            E   T   T++  L  +R           
Sbjct: 311 QNWFDVFLPAGQRETMSRVLTPHPTAATHGSESMDTEIRTRQGALRLIRWNTVPDINVQG 370

Query: 554 YSL----TMHDISEWKQEKN------KLSHAKKIAEKESSHKSDFLARV--SHEIRTPLT 601
             +       DI+  +  ++      ++   +   +  +    DF   +   HEI   L 
Sbjct: 371 EIIGVTCLGVDITAIRMARDTLSKSAQMHSMRLRIDDAAHSTPDFATLMRTVHEI---LG 427

Query: 602 AII---GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
            +I        + N     L  P +++    +  +       ++DL D    E+ ++ L 
Sbjct: 428 EVIDAKNLITALINTDKNSLEFPYWVDEMTDVSEAAPR----IDDLND---PENRRLTLE 480

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693
               ++   +S   S +   A   +I +      +
Sbjct: 481 LLRGNIPNILSS--SDMTALAEAGKIRLVGVIPQS 513



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/282 (11%), Positives = 69/282 (24%), Gaps = 10/282 (3%)

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
             +       +          I  F +       + +     L  +   + +        
Sbjct: 2   PATISLQRQLDHLNRAQRHAGIGSFEHDFSSGATFWSDEQYRLLGFSPDETLPSLDRFLE 61

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
           LLD            V   +                               + ++     
Sbjct: 62  LLDPRDRDRFLRKVGVCFTKRRELRTEV-----RYTPKSGKLRTAQIRAEFEPDESGRIR 116

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
             +G   +  + R  +  +        +I E   +GI      G  LS N +++K+  Y 
Sbjct: 117 VISGTFQDVTERRAVQSALRQSEAGYRTIFENALEGIYQSTPGGTFLSVNASMAKILRYD 176

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
               L                +      L  +  + +   T    K+  L+ + +    +
Sbjct: 177 DPADLMASIKDIGHDLYADPCDRKRYMELLEEHIRVMGFETQVRRKDGSLIWVTLNSTLI 236

Query: 549 PFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
             +         TM DIS  K+ +  L  + +         S
Sbjct: 237 RDAGANRPCLIGTMEDISTRKRFELSLIESDQRFRNLLQQIS 278


>gi|298694962|gb|ADI98184.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus ED133]
          Length = 554

 Score =  326 bits (836), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 87/398 (21%), Positives = 169/398 (42%), Gaps = 33/398 (8%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEI--EVMQLCSILEATSDGIAIINREGIIL 475
                          +   D+  R+ K   E   +  +L + +E     I +I+R G I+
Sbjct: 178 IRVPESNVVETKALFVSTNDLARRLQKLNNEQKIQSNRLKTTIENIPSAILMIDRNGKIV 237

Query: 476 STNRAVSKLFGYPVEDILRKPFTVF-LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
             N+A  + F                      + +   + E   ++     +     +  
Sbjct: 238 VANKAYYEQFNIS------HNIEQVGYHGYVNTEIEQLILESFKVEKPIYEQLEVAINQV 291

Query: 535 EEKLLSLRIIIKKLPFS---SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
             K   +  +              + MHDI+  KQ +              + + +F+A 
Sbjct: 292 HAKYFDISCVPILTRSQKSLQGILVVMHDITNLKQLE--------------NLRREFVAN 337

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKI 650
           VSHE++TP+T+I GF+E + +   G   +P+ ++ + N I +  N +  +V DLLD+S I
Sbjct: 338 VSHELKTPITSIKGFAETLID---GAKNDPQSLDMFLNIILKESNRIESLVTDLLDLSHI 394

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710
           E     L  + ++L +     I  +   AN+K I I T    ++  + A    + Q+  N
Sbjct: 395 E-QHTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTDIEKDVI-VKAQESKIAQVITN 452

Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           +L+NAI+++   G I +   +  +  VI  V+D G+G+   + ++  + F ++  ++   
Sbjct: 453 LLTNAINYSYEDGDINVRV-YRDDFRVIFEVQDFGIGIKLEDQQRIFERFYRVDKARSRD 511

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
             GTGLGL + K +V+A+ G   + S   KG+  ++I 
Sbjct: 512 SGGTGLGLSITKHIVEAHQGNIEVNSQVGKGSTFKVIL 549


>gi|114800173|ref|YP_759993.1| sensory box sensor histidine kinase/response regulator [Hyphomonas
           neptunium ATCC 15444]
 gi|114740347|gb|ABI78472.1| sensory box sensor histidine kinase/response regulator [Hyphomonas
           neptunium ATCC 15444]
          Length = 655

 Score =  326 bits (836), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 116/507 (22%), Positives = 198/507 (39%), Gaps = 37/507 (7%)

Query: 323 PETVDKCPIPFFV-----YSHGNLFY-----ANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
               D  P+            G +       AN     L     + +     G+      
Sbjct: 3   ARLFDLLPVVVCEIAPVRAPDGTIIDLEWIDAN----RLMNESILPNGGSIVGMRVFEFD 58

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
           P   D+   K V+        I     L          +     P E             
Sbjct: 59  PAYRDSEMTKNVIQVIETGEPITYITGLGRAAKMLGKVMKTVITPTE--------FGALA 110

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
              E  +    +           +  +    GI + +RE  I   N A+ +L GY  E++
Sbjct: 111 CSHEVTELAEERDAALKRFQLARAACDHAIHGIVVTDRESRIHYVNHAICELIGYSEEEL 170

Query: 493 LRKPFTVFL---EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
           L K   +            + + +   +               T++   + ++       
Sbjct: 171 LGKDVGILFGVKAFQPQKALGNQVVSEIESGKLIRHISDAEAYTRDGVKIRVQASTSSTH 230

Query: 550 ----FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
                   +   + D+ E +++ ++L  A   AE+ +  KS+FLA +SHEIRTPL  ++G
Sbjct: 231 WGEDDDMVFITYIRDVREERRKAHELRDALNRAEQATRLKSEFLANMSHEIRTPLNGVLG 290

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
            ++V+ + +          E    I  SGN ++ ++ND+LD+SKIE+G+M+L   P  L 
Sbjct: 291 MAQVLAHGKL----TEAQAEQVGVILDSGNTLMVLLNDILDLSKIEAGRMDLSPVPGDLR 346

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQ 724
             +S    L +  ANEK I IR     ++P R+L D   V+Q   N+LSNAI FT  G  
Sbjct: 347 HKLSGLFKLHEAAANEKGIGIRLFVDPSVPSRLLFDPVRVRQCVSNLLSNAIKFTSQGEV 406

Query: 725 IIISTT---HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           +++ T+    +    VI+ V DTGVG+   ++++  + F Q   S   +  GTGLGL + 
Sbjct: 407 MLVVTSEPVQSGAHRVIMHVSDTGVGIAADKVDRIFESFAQEDGSTTRKFGGTGLGLSIT 466

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIF 808
           + +     G     S   KG++  + F
Sbjct: 467 RRLARMMGGDVTAVSQVGKGSIFTLKF 493



 Score = 43.5 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/140 (10%), Positives = 39/140 (27%), Gaps = 4/140 (2%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            D    +  ++  + + IG    +++G  +  +  +    P   +G+ +  +    GK  
Sbjct: 146 TDRESRIHYVNHAICELIGYSEEELLGKDVGILFGVKAFQPQKALGNQVVSE-IESGKLI 204

Query: 149 LWPIEGTNL---YVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
               +        V I + A    +   E         +   R +       +    +  
Sbjct: 205 RHISDAEAYTRDGVKIRVQASTSSTHWGEDDDMVFITYIRDVREERRKAHELRDALNRAE 264

Query: 206 HLHEIKKGHSSVEKEKYDIF 225
               +K    +    +    
Sbjct: 265 QATRLKSEFLANMSHEIRTP 284



 Score = 39.6 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 13/147 (8%), Positives = 30/147 (20%), Gaps = 5/147 (3%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
                   +   L     D       V      + Y N +   L  Y   + +    G+ 
Sbjct: 119 AEERDAALKRFQLARAACDHAIHGIVVTDRESRIHYVNHAICELIGYSEEELLGKDVGI- 177

Query: 368 TLL-DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
            L               V+        I   +       +                   +
Sbjct: 178 -LFGVKAFQPQKALGNQVVSEIESGKLIRHISDAEAYTRDGVKIRVQASTSSTHW-GEDD 235

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQ 453
           +M       +  + R    ++   + +
Sbjct: 236 DMVFITYIRDVREERRKAHELRDALNR 262


>gi|255033986|ref|YP_003084607.1| multi-sensor hybrid histidine kinase [Dyadobacter fermentans DSM
           18053]
 gi|254946742|gb|ACT91442.1| multi-sensor hybrid histidine kinase [Dyadobacter fermentans DSM
           18053]
          Length = 868

 Score =  326 bits (836), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 111/482 (23%), Positives = 196/482 (40%), Gaps = 27/482 (5%)

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW----NRENSLAMTF 415
           I    G        +  +   +  + L                 +     + + +  +  
Sbjct: 132 IYRTQGSEPAFAKIQEGEGIRLNQL-LTAKIDQIEDYENHNLDQRRKLVSDTQQNSILFI 190

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
           +           +    +  +    R+ + +++     +   LEA  DG+ +IN E  I 
Sbjct: 191 LLTGAVGFILTILSIIFLNLDKRKQRLLQNEIKERERTVSQYLEAIPDGVMVINSERKIE 250

Query: 476 STNRAVSKLFGYPVE-----DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530
             N +  ++ G   E     +       +          +     +      + L    +
Sbjct: 251 LINESGREILGVDGERPATLEEQVTRIKLLDPTRYHVRFSADTLPVARALQGEKLTGNKI 310

Query: 531 GSTKEEKLLSLRIIIKKLPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
              K +K+  L   ++ +               DI+E    +  L  A+ +AEK    K 
Sbjct: 311 DLVKNDKIYHLETSVQPVIGLDGRIKSAITVFRDITERANYEATLEKARSLAEKSVRVKD 370

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
            FL+ VSHEIRTPL AIIGF+ ++     G + + +  EY  YI  +G  +L+++ND+LD
Sbjct: 371 IFLSNVSHEIRTPLNAIIGFTNLLM----GEVTDQKSQEYVGYIQYAGKNLLELINDILD 426

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVK 705
            SKIE+G+++L   PVS+ E   E  +++   A EK I+     A+ +P  I  D   + 
Sbjct: 427 FSKIEAGQVHLEKAPVSIRELADEISAIMHHRAVEKGIVYEALLADGLPEFIETDKLRLT 486

Query: 706 QIALNILSNAIHFTPSGGQIIISTT-----HTSNEEVILRVRDTGVGMTNYELEKAMKPF 760
           QI LN+  NA+ FT  G  + +            + +   V+DTGVG+   +L++    F
Sbjct: 487 QILLNVCGNAVKFTEKGS-VKLRVAPIGEPLNDVQNIRFEVKDTGVGIPKDKLKEVFNRF 545

Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP--LYDTSHPHD 818
            Q   S      GTGLGL + K++V    G   + S   +GT+  + FP  + + +  HD
Sbjct: 546 VQATESTTRVFGGTGLGLSIVKSLVQLFEGTLNLESELGQGTVFTMDFPFRIVNDAGLHD 605

Query: 819 CI 820
            I
Sbjct: 606 DI 607



 Score = 40.0 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/152 (9%), Positives = 40/152 (26%), Gaps = 5/152 (3%)

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKY--KSVDD 359
           L  R    L     E E    + ++  P    V +    +   N S   +     +    
Sbjct: 210 LDKRKQRLLQNEIKERERTVSQYLEAIPDGVMVINSERKIELINESGREILGVDGERPAT 269

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
           +E       LLD  +     +   + + R+ +       ++  ++ +      +      
Sbjct: 270 LEEQVTRIKLLDPTRYHVRFSADTLPVARALQGEKLTGNKIDLVKND--KIYHLETSVQP 327

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEV 451
                        +  +  +    +  +E   
Sbjct: 328 VIGLDGRIKSAITVFRDITERANYEATLEKAR 359


>gi|218460506|ref|ZP_03500597.1| probable two-component sensor histidine kinase/response regulator
           hybrid protein [Rhizobium etli Kim 5]
          Length = 590

 Score =  326 bits (836), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 104/430 (24%), Positives = 185/430 (43%), Gaps = 17/430 (3%)

Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
           A       + W    S+                   + +   + +    +  +E     +
Sbjct: 2   AEEPEPIEVGWAGGKSVIFDSRRISNDRILLTYADISAVREREKEIHETRAALERVGEMM 61

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPS-VMNHY 512
                A S G+AI+ ++GII  +N A++ +   P   I   + +    E        +  
Sbjct: 62  RDATHAMSQGLAIV-QDGIIRMSNEAMADILQIPAHYIAAGQGWLGMFEFCAARGDFHDA 120

Query: 513 LTEILSLDLRQTLEKI---TLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN 569
             EIL         +    T+     E+ +++   +        +     D++E K  + 
Sbjct: 121 AAEILQEWRANIAARQPISTVFHVAGERWVNMDATVS---TGQHWVALFTDVTELKSREE 177

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L      AE     KS+FLA +SHEIRTP+  ++G +E++           R   + + 
Sbjct: 178 ELRELLSRAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKTNLDT----RQKTFIDI 233

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I +SGN +L I+ND+LD SKI++G+M L      + EAV +  +L+  +A EK I +   
Sbjct: 234 IVKSGNALLTIINDILDFSKIDAGQMTLRKAAFDITEAVEDVATLLSSHAAEKNIELLGR 293

Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVI--LRVRDTG 745
            A ++P  ++ D    +QI  N++ NA+ FT  G   + +        E++  +R+ DTG
Sbjct: 294 AAPDLPAAVIGDAGRFRQIVTNLVGNAVKFTERGHVFVDVGFETVVGGEIMANIRIEDTG 353

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+ + +LE     F Q+  S   R EGTGLGL +   +VD   G   + S   KG++  
Sbjct: 354 IGIPHEKLESVFDKFSQVDASSTRRHEGTGLGLAITAGLVDLFGGYIKVESQWGKGSVFT 413

Query: 806 IIFPLYDTSH 815
           +  P    + 
Sbjct: 414 VKLPFAVAAA 423


>gi|302344236|ref|YP_003808765.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM
           2075]
 gi|301640849|gb|ADK86171.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM
           2075]
          Length = 975

 Score =  326 bits (836), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 107/710 (15%), Positives = 222/710 (31%), Gaps = 57/710 (8%)

Query: 137 LKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRAL 196
           L+R+           +   +  + +      +        G  G  +   +R        
Sbjct: 152 LERRADAIDLQAQRHVMELSRRLDLQFGLAVV--AATLLLGLVGVAVYLADRRRIALEDD 209

Query: 197 GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP-------PPHLRMKNKVSSLTEYYAH 249
            +  + +F    E                             P    +         +  
Sbjct: 210 LRHSETRFRLAMEATSDGLWDWNVASGEVYYSPGYWRMLGYDPDRSGQRIQDWSDLLHPD 269

Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS-----KESFEYLS 304
              +        + +       +      +            ++  +     +    ++ 
Sbjct: 270 DRALATRTNQDCVENRVPGFEIEFRARAADGAWRWILGRGKAVERAADGLALRIIGTHVD 329

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIA 363
                       + E      VD+    FF+    G +   N +   +  Y+  + + +A
Sbjct: 330 ITARKQAETTLRDSETRFRSLVDQAADAFFLTDAQGRIQDVNRAACAILAYERDELLAMA 389

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
                  D          + +    +         R    +    + L +         +
Sbjct: 390 IA-----DIDPAMAGGRYEELWRRLTPGHGQRFETRH---RKKDGSLLPVELS--VGLLE 439

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
                    +  +  + ++ + ++     ++ ++  ATSD + +++ +  IL+ N   ++
Sbjct: 440 VGGQRLAQSLARDISERKLAEERIRESSRRITALFNATSDSVILLDPDCTILAINEHGAR 499

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
             G   ED++ +     L   T  + +  +  IL        E+   G     ++  +  
Sbjct: 500 RRGLRPEDLVGQSLCERLPPETARIRSAKVEHILRTGQPTVFEEDRDGRHYMIRMFPV-- 557

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE--SSHKSDFLARVSHEIRTPLT 601
                   +  +    DI+E KQ + +    +    +             V+H+    L 
Sbjct: 558 -PGADGEVAQIASFSRDITESKQAEAEKVKLEGQLMQARKMEAIGVMAGGVAHDFNNILG 616

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           AI+G++E+          NP        I ++G     +V  +L  S+    K+ +   P
Sbjct: 617 AILGYAEMALQDAKTKRANPAD---LEQIVKAGERGKQLVRQILTFSR----KVEVDLRP 669

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           + L++AVS+A  L++       I +       +  I AD   ++QI LN+  NA    P 
Sbjct: 670 LDLNQAVSQAAQLLEKTIPR-MIGLELELIRRLRPINADANQLEQILLNLGVNAADAMPD 728

Query: 722 GGQIIISTTHT--------------SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
           GG + I T +               S + V L V DTG GM    +E+  +PF       
Sbjct: 729 GGLLRIRTENVVVENRSCLACGRTFSGQYVSLSVSDTGQGMDRQTIERIFEPFFTTKP-- 786

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP-LYDTSHP 816
             +G+GTGLGL     +V  + G     S   +GT   + FP L   S P
Sbjct: 787 --KGKGTGLGLATVYGIVLGHGGHIDCHSELGQGTTFTVFFPALQSQSTP 834



 Score =  132 bits (331), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 46/398 (11%), Positives = 109/398 (27%), Gaps = 11/398 (2%)

Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKN-KVSSLTEYYAHKDD 252
            AL ++    F    + + G      E++            R KN   +   +  A +  
Sbjct: 89  VALLRQALASFEDALQRQAGVEGQTAEEFRHKVDAFDASLERWKNAGQAKAGQAVALRVA 148

Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
               E+       ++     E    ++L           L      +  YL+ R   +L 
Sbjct: 149 FNDLERRADAIDLQAQRHVMELSRRLDLQFGLAVVAATLLLGLVGVA-VYLADRRRIALE 207

Query: 313 AYFDEGENLTPETVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
                 E      ++      + ++  +   Y +P +  +  Y      +     S LL 
Sbjct: 208 DDLRHSETRFRLAMEATSDGLWDWNVASGEVYYSPGYWRMLGYDPDRSGQRIQDWSDLLH 267

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
               +         +   +               +      +      +       +   
Sbjct: 268 PDDRALATRTNQDCV---ENRVPGFEIEFRARAADGAWRWILGRGKAVERAADGLALRII 324

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
           G   +    +  +  +     +  S+++  +D   + + +G I   NRA   +  Y  ++
Sbjct: 325 GTHVDITARKQAETTLRDSETRFRSLVDQAADAFFLTDAQGRIQDVNRAACAILAYERDE 384

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
           +L                      +     ++     T    K+  LL + + +  L   
Sbjct: 385 LLAMAIADIDPAMAGGRYEELWRRLTPGHGQR---FETRHRKKDGSLLPVELSVGLLEVG 441

Query: 552 SCYSL--TMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
                     DISE K  + ++  + +      +  SD
Sbjct: 442 GQRLAQSLARDISERKLAEERIRESSRRITALFNATSD 479



 Score = 78.5 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 31/411 (7%), Positives = 77/411 (18%), Gaps = 36/411 (8%)

Query: 96  KEISEELPKTIGNYAFKM--IGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIE 153
              S    + +G    +         D+                        +       
Sbjct: 238 VYYSPGYWRMLGYDPDRSGQRIQDWSDLLHPDDRALATRTNQDCVENRVPGFEIEFRARA 297

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
               +  I      +       +  R  G               +  + +F  L +    
Sbjct: 298 ADGAWRWILGRGKAVERAADGLA-LRIIGTHVDITARKQAETTLRDSETRFRSLVDQAAD 356

Query: 214 HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH-----KDDVLKTEKYPLLTSEESS 268
              +   +  I         +    +   L    A           +     L       
Sbjct: 357 AFFLTDAQGRIQDVNRAACAILAYERDELLAMAIADIDPAMAGGRYEELWRRLTPGHGQR 416

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
              +      +L           +                        E         + 
Sbjct: 417 FETRHRKKDGSLLPVELSVGLLEVGGQRLAQSLARDISERKLAEERIRESSRRITALFNA 476

Query: 329 CPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
                 +      +   N         +  D +     L   L        +A    +L 
Sbjct: 477 TSDSVILLDPDCTILAINEHGARRRGLRPEDLVGQ--SLCERLPPETARIRSAKVEHILR 534

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK- 446
               T                    +   P   A+   E         +  +++  + + 
Sbjct: 535 TGQPTVFEED--------RDGRHYMIRMFPVPGAD--GEVAQIASFSRDITESKQAEAEK 584

Query: 447 --ME---IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
             +E   ++  ++ +I      G+      G+    N  +  + GY    +
Sbjct: 585 VKLEGQLMQARKMEAI------GVM---AGGVAHDFNNILGAILGYAEMAL 626



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 52/439 (11%), Positives = 116/439 (26%), Gaps = 30/439 (6%)

Query: 56  DQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIG 115
           D      + T   DSE  F          F +  DA G +++++      +     +++ 
Sbjct: 329 DITARKQAETTLRDSETRFRSLVDQAADAF-FLTDAQGRIQDVNRAACAILAYERDELLA 387

Query: 116 MRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREF 175
           M + D+   +       +   L   +    +T     +G+   +P++L+   +     E 
Sbjct: 388 MAIADIDPAMAGGRYEELWRRLTPGHGQRFETRHRKKDGSL--LPVELSVGLL-----EV 440

Query: 176 SGFR-GFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL 234
            G R    +              +   ++ + L         +      I +        
Sbjct: 441 GGQRLAQSLARDISERKLAEERIRESSRRITALFNATSDSVILLDPDCTILAINEH-GAR 499

Query: 235 RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294
           R   +   L      +    +T +      E      Q      + +          +  
Sbjct: 500 RRGLRPEDLVGQSLCERLPPETARIRSAKVEHILRTGQPTVFEEDRDGRHYMIRMFPVPG 559

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC--PIPFFVYSHGNLFYANPSFLLLT 352
              E  +  S     + S   +  +      + +        V + G     N     + 
Sbjct: 560 ADGEVAQIASFSRDITESKQAEAEKVKLEGQLMQARKMEAIGVMAGGVAHDFNNILGAIL 619

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
            Y  +           L DA     N A    ++   +R        L   +    +   
Sbjct: 620 GYAEM----------ALQDAKTKRANPADLEQIVKAGERGKQLVRQILTFSRKVEVDLRP 669

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL--------EATSDG 464
           +                   +   +++     R +  +  QL  IL        +A  DG
Sbjct: 670 LDLNQAVSQAAQLLEKTIPRMIGLELELIRRLRPINADANQLEQILLNLGVNAADAMPDG 729

Query: 465 IAIINREGIILSTNRAVSK 483
             +  R   ++  NR+   
Sbjct: 730 GLLRIRTENVVVENRSCLA 748


>gi|229151308|ref|ZP_04279513.1| hypothetical protein bcere0011_28550 [Bacillus cereus m1550]
 gi|228632153|gb|EEK88777.1| hypothetical protein bcere0011_28550 [Bacillus cereus m1550]
          Length = 801

 Score =  326 bits (836), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 103/532 (19%), Positives = 211/532 (39%), Gaps = 47/532 (8%)

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVD-----KCPIPFFVYSHGNLFYANPSFLLL 351
            +  E +      +     +   + T E ++                G++  AN ++  +
Sbjct: 294 GQVIEVVGSTVDITERKKVESELSATKELLESFIKHNLDAITISDREGHILQANKAYEKI 353

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ-WNRENS 410
             + S + I            P + D    + +   +   T  +   RL T++  +  + 
Sbjct: 354 FGWSSQEIIGKRL--------PCVPDFLMEESLKNIQKILTGESVVTRLETVRQRSDGSL 405

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK-------MEIEVMQLCSILEATSD 463
           L ++       +     +  + I  +  + +  +R+       +    M+  +++E  +D
Sbjct: 406 LDVSLTVSPILDVRGNVIALSAICRDISERKQAERERHRLHQQLRDSEMKYRALIEQATD 465

Query: 464 GIAI--INREG---IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
            + +  +N +      +  N    + FGY  E++L   F+  + Q++  ++   L +I  
Sbjct: 466 AVYVVELNEDNAPSRFIEVNPVGCRRFGYSREELLSLSFSNIVPQDSQMIVR-LLEKIKK 524

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578
                TL+   +  T +       + +  L     +     DI+E  + +  L  ++K+A
Sbjct: 525 GQTSFTLQDEYVFPTGKVITTEFSVRVFNLNGKKVFLSISRDITERLKTEELLRKSEKLA 584

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
                        ++HEI  PLTA+ GF +++K+       N     Y N +      + 
Sbjct: 585 VV-----GQLATVMAHEINNPLTAMKGFMQLLKSTE-----NENNQGYINIVSSEIERIE 634

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
            I  + + ++K +  K+  +     +   + + + L+Q  A    I IR      IP I 
Sbjct: 635 SITTEFMAVAKPQVVKIKPN----DISVLMDQVLMLLQPQAMMNNIKIRIDLNPGIPLIS 690

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
            +   +KQ+ +NIL NAI   P GG+I+I      N +V +R  D G G+    +    +
Sbjct: 691 CEGNQLKQVFVNILKNAIESMPMGGEILIQLNILDNNQVSIRFIDQGCGIPKERIPYLGE 750

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           PF        I+ EG GLGL +   +++ + GK +I S   KGT +E+  P+
Sbjct: 751 PFY------SIKEEGIGLGLMICYKIIETHQGKVFIESEVNKGTTVEVTLPI 796



 Score =  108 bits (269), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 44/286 (15%), Positives = 91/286 (31%), Gaps = 21/286 (7%)

Query: 313 AYFDEGENLTPETVDKCPIPFF----VYSHGNLFYANPSFLLLTKYKSVDDIEI-AGGLS 367
               + +    +TV +     F    V  H      +  F     + S   +      + 
Sbjct: 186 RELKKSKQELADTVHELQGGIFKFKKVGKHFIHTLCDGQFYYQNGFYSEQVVGKSLRTID 245

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
             +  P L          L   +   I        + W  + ++ +         +  + 
Sbjct: 246 ASIVPPHLVPQLMKY--YLQAWEGKEIIFE-----LPWPNDKTIILI--ALRPIKRNGQV 296

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
           +   G   +  + +  + ++      L S ++   D I I +REG IL  N+A  K+FG+
Sbjct: 297 IEVVGSTVDITERKKVESELSATKELLESFIKHNLDAITISDREGHILQANKAYEKIFGW 356

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
             ++I+ K     +           + +IL           T+    +  LL + + +  
Sbjct: 357 SSQEIIGKRL-PCVPDFLMEESLKNIQKIL-TGESVVTRLETVRQRSDGSLLDVSLTVSP 414

Query: 548 LPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
           +               DISE KQ + +     +   ++S  K   L
Sbjct: 415 ILDVRGNVIALSAICRDISERKQAERERHRLHQQL-RDSEMKYRAL 459



 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/286 (13%), Positives = 84/286 (29%), Gaps = 23/286 (8%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG-KTT 148
           D  G++ + ++   K  G  + ++IG RL  V D L  +   +I  +L  ++     +T 
Sbjct: 338 DREGHILQANKAYEKIFGWSSQEIIGKRLPCVPDFLMEESLKNIQKILTGESVVTRLETV 397

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +G+ L V + ++  PI              I               RL ++     
Sbjct: 398 RQRSDGSLLDVSLTVS--PILDVRGNVIALS--AICRDISERKQAERERHRLHQQLRDSE 453

Query: 209 EIKKGHSSVEKEKYDIFSQQS-----------PPPHLR---MKNKVSSLTEY-YAHKDDV 253
              +       +   +                P    R    + ++ SL+      +D  
Sbjct: 454 MKYRALIEQATDAVYVVELNEDNAPSRFIEVNPVGCRRFGYSREELLSLSFSNIVPQDSQ 513

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
           +       +   ++S   Q+++        T +               +LS     +   
Sbjct: 514 MIVRLLEKIKKGQTSFTLQDEYVFPTGKVITTEFSVRVFN--LNGKKVFLSISRDITERL 571

Query: 314 YFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVD 358
             +E    + +      +     +   N   A   F+ L K    +
Sbjct: 572 KTEELLRKSEKLAVVGQLATVMAHEINNPLTAMKGFMQLLKSTENE 617


>gi|115372454|ref|ZP_01459763.1| two-component system sensory histidine kinase [Stigmatella
           aurantiaca DW4/3-1]
 gi|115370667|gb|EAU69593.1| two-component system sensory histidine kinase [Stigmatella
           aurantiaca DW4/3-1]
          Length = 498

 Score =  326 bits (836), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 99/493 (20%), Positives = 195/493 (39%), Gaps = 45/493 (9%)

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
            ++   ++      + L  A     +   +  +              L T        + 
Sbjct: 9   GHRRAVELNQHLFTTALASAATGGASTVRRRELSLVDPLQGTDLLFELVTTPMREAQGVV 68

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG 472
                              G     +  R ++++   E ++L  IL++ ++ I + +  G
Sbjct: 69  GVVSVLRNVTDLGRATQALGESYRRL--RASEQEARSERLRLDLILDSVANPIILTDPSG 126

Query: 473 IILSTNRAVSKLFGYPV--EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530
            ++  N    +LF  P    +  R+         +      +L+ +LS    +       
Sbjct: 127 SMVLMNDPAERLFSAPAGSGEASRRRVRTNDAHFS-----SFLSHLLSQGSARRWRGELH 181

Query: 531 GSTK-EEKLLSLRIIIKKLPFSSC----YSLTMHDISEWK-------------------- 565
                    L +  +  K+             +HD +E +                    
Sbjct: 182 LMEPTTGTPLPMEAVASKVLTDQGETTSIVTLLHDRTETREKARLLEQLKTASSELEAKV 241

Query: 566 --------QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
                   ++  KL       E+ S+ KS FLA +SHE RTPL AI+G++ ++     G 
Sbjct: 242 HTATAELAEQNEKLRRQALQLEQASAAKSQFLANMSHEFRTPLNAILGYTNMLLQGVSGE 301

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
           +  P        ID +G  +L ++N++LDI++IE+G+M L+    +L E + E ++ +  
Sbjct: 302 MM-PTQKRNLQRIDSNGRHLLQVINEILDITRIEAGRMPLNLSDFALPELLQEVMAELDP 360

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE- 736
                ++++  +    +P + +D + VKQI LN+LSNA+ FT  G  I ++  +  +   
Sbjct: 361 IIARTKLVVDAALPPRLPEVHSDRQKVKQIVLNLLSNALKFTHEGS-IQVNAEYQPSLSL 419

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           V++ V+DTG+G+     EK  + F Q+ +S      GTGLGL + + +     G+  + S
Sbjct: 420 VLISVKDTGIGIAQEHQEKIFEDFQQVDSSPTRAYGGTGLGLSICRRLATMLGGRITVQS 479

Query: 797 TPAKGTLIEIIFP 809
              +G+   +  P
Sbjct: 480 ALGQGSTFTLHLP 492


>gi|307152733|ref|YP_003888117.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7822]
 gi|306982961|gb|ADN14842.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7822]
          Length = 1751

 Score =  326 bits (836), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 91/429 (21%), Positives = 185/429 (43%), Gaps = 39/429 (9%)

Query: 405  WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK-MEIEVMQLCSILEATSD 463
            +    +            Q    +     + + ++    +   ++  +  L +I++  +D
Sbjct: 1335 YQNSQARHWEQREINLLTQAGNQLGVGVYQAQLLEQTQQQSNILQTTLADLNAIVDNLAD 1394

Query: 464  GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
            G+ + +  G I   N A+  +F    +++  K  +  L  +    + + + +I       
Sbjct: 1395 GLLVTDIHGFITRFNPALLSMFNLT-DNLKGKHLSEVLSLD----LANLVRKIGRQQKEI 1449

Query: 524  TLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAE 579
               ++ LGS +  + L   I  +             + + D++  ++             
Sbjct: 1450 VTAEVELGSGRSGQALVSSIFQENFGDEEEPCLGSVILIRDVTSEREV------------ 1497

Query: 580  KESSHKSDFLARVSHEIRTPLTAIIGFS----EVIKNQRFGPLGNPRYI---------EY 626
                 K++FLA VSHE+RTPLT+++GF+    E ++   F  + +             + 
Sbjct: 1498 --DRMKTEFLATVSHELRTPLTSVLGFTSLIQEKLEEVIFPAISSDETRVKKARKKVGQN 1555

Query: 627  ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
               I      +  ++ND+LDI+K+E+G+M  + +  S+ E +  A +      ++K+I +
Sbjct: 1556 IKIIISEAERLTALINDVLDIAKMEAGRMEWNIKSTSVVEILETASAATYPLFDKKKIDL 1615

Query: 687  RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
               F  N+P I  D   + Q+ +N+LSNA+ FT  G  +        + ++++ + DTG+
Sbjct: 1616 IKDFPLNLPNIWVDKNRMIQVVINLLSNAVKFTDEGS-VTCCAKLEDD-QLVISITDTGI 1673

Query: 747  GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
            G+   E  K  + F Q  N    +  GTGLGLP+ K +V+ + GK ++ S P +G+    
Sbjct: 1674 GIAENEQSKIFERFQQGGNILTDKPTGTGLGLPICKQIVEYHGGKIWVISAPHQGSTFFF 1733

Query: 807  IFPLYDTSH 815
              PL    H
Sbjct: 1734 SLPLSGQEH 1742


>gi|260102099|ref|ZP_05752336.1| sensory box histidine kinase VicK [Lactobacillus helveticus DSM
           20075]
 gi|260084086|gb|EEW68206.1| sensory box histidine kinase VicK [Lactobacillus helveticus DSM
           20075]
          Length = 619

 Score =  326 bits (836), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 85/408 (20%), Positives = 172/408 (42%), Gaps = 40/408 (9%)

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
           ++  +           ++    +   + E  +L S+L   SDG+   +R G +   N   
Sbjct: 236 DELGQLAKAFNTLSVRIEQSQEES--DSERRRLDSVLSHMSDGVLATDRHGNVSVVNHMA 293

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
                   ++I+ +P    L     S             +    E +          + L
Sbjct: 294 LSYLNADEDEIINRPIAEVLGLKDTSS---------QDLISSQKEIVVTVKPGTRDEIIL 344

Query: 542 RIIIKKLPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
                 +   + +       +HD++E ++ +              + +  F++ VSHE+R
Sbjct: 345 HASFSLIKRVTGFVSGSVCVLHDVTEQQKNE--------------NSQRQFVSNVSHELR 390

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TPLT++  + E +    +         ++     +  + ++ ++NDLL +S+++ G   +
Sbjct: 391 TPLTSLQAYIEALNEGAW--KDPEIAPKFLEVAQQETSRMIRMINDLLSLSRMDRGVSKM 448

Query: 658 HFEPVSLDEAVSEAISLV-------QLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710
             E V+L++ VS  ++         +   ++K+  I+    N    +  D   + Q+  N
Sbjct: 449 DLEFVNLNDFVSHILNRFDMIVKTDKNKGHKKKYTIKRELGNQALWVEIDTDKMMQVIDN 508

Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           I++NAI ++P GG I +  TH+    VIL + D G+G+   +L K    F ++  ++   
Sbjct: 509 IMNNAIKYSPDGGVITVRLTHS-QGHVILSISDQGLGIPRKDLGKIFDRFYRVDKARSRA 567

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
             GTGLGL +AK +V+A+ G+ +  S+  KG+   I  P Y+T    D
Sbjct: 568 QGGTGLGLAIAKEIVEAHHGRIWADSSEGKGSTFYISLP-YETMTEED 614


>gi|259502100|ref|ZP_05745002.1| sensory box histidine kinase VicK [Lactobacillus antri DSM 16041]
 gi|259169913|gb|EEW54408.1| sensory box histidine kinase VicK [Lactobacillus antri DSM 16041]
          Length = 617

 Score =  326 bits (836), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 87/426 (20%), Positives = 174/426 (40%), Gaps = 43/426 (10%)

Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI-EVMQLC 455
             R  T++  R       F    +     E     G            ++    E  +L 
Sbjct: 210 EMRKQTLRIARG-----DFSGQVRVMGNDELGQLAGAVNNLSVRVEEAQESSDSERRRLD 264

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYP-VEDILRKPFTVFLEQNTPSVMNHYLT 514
           S+L   SDG+   +R G I   N    +L G    +D++ K     L+      +   + 
Sbjct: 265 SVLSHMSDGVLATDRRGNITIVNNMALQLLGVDHEDDLIGKSIIDALDIRHDYTVRELIN 324

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNK 570
                      +++ +  +     L L      +   S +       +HD++  ++E+ +
Sbjct: 325 --------SNQKEMIIDMSAGGNDLILNAYFSPIQRESGFISGLVCVLHDVTSQQKEERE 376

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
                         +  F++ VSHE+RTPLT++  + E + +  +         ++   I
Sbjct: 377 --------------RKQFVSNVSHELRTPLTSVHSYVEALSDGAW--KDQDIAPQFLTVI 420

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE-------KR 683
               N ++ ++NDLL +S+++SG   L+ E V++ E  +  ++   +   +       K+
Sbjct: 421 QNETNRMIRMINDLLSLSRMDSGTTKLNLEYVNIKELFNYILNRFDMIIKKNENNKDSKK 480

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
             I   F +    +  D     Q+  NI++NAI ++P GG I       ++  VIL + D
Sbjct: 481 YTIERYFTDKDLWVEIDTDKFTQVIDNIMNNAIKYSPDGGVITTRL-LETHNHVILSISD 539

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
            G+G+   +L +    F ++  ++  +  GTGLGL ++K +V+   G+ ++ S   +G+ 
Sbjct: 540 QGLGIPRKDLGRIFDRFFRVDKARSRKQGGTGLGLAISKEVVNLLGGQIWVDSVEGQGST 599

Query: 804 IEIIFP 809
             I  P
Sbjct: 600 FYISLP 605


>gi|229051835|ref|ZP_04195282.1| hypothetical protein bcere0027_57210 [Bacillus cereus AH676]
 gi|228721513|gb|EEL73010.1| hypothetical protein bcere0027_57210 [Bacillus cereus AH676]
          Length = 618

 Score =  326 bits (836), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 104/532 (19%), Positives = 212/532 (39%), Gaps = 47/532 (8%)

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVD-----KCPIPFFVYSHGNLFYANPSFLLL 351
            +  E +      +     +   + T E ++                G++  AN ++  +
Sbjct: 111 GQVIEVVGSTVDITERKKVESELSATKELLESFIKHNLDAITISDREGHILQANKAYEKI 170

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ-WNRENS 410
             + S + I            P + D    + +   +   T  +   RL T++  +  + 
Sbjct: 171 FGWSSQEIIGKRL--------PCVPDFLMEESLENIQKILTGESVVTRLETVRQRSDGSL 222

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK-------MEIEVMQLCSILEATSD 463
           L ++       +     +  + I  +  + +  +R+       +    M+  +++E  +D
Sbjct: 223 LDISLTVSPILDVRGNVIALSAICRDISERKQAERERHRLHQQLRDSEMKYRALIEQATD 282

Query: 464 GIAI--INREG---IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
            + +  +N +      +  N    + FGY  E++L   F+  + Q++  ++   L +I  
Sbjct: 283 AVYVVELNEDNAPSRFIEVNPVGCRRFGYSREELLSLSFSNIVPQDSQIIVR-LLEKIKK 341

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578
                TL+   +  T +       + +  L     +     DI+E  + +  L  ++K+A
Sbjct: 342 GQTSFTLQDEYVFPTGKVITTEFSVRVFNLNGKKVFLSISRDITERLKTEELLRKSEKLA 401

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
                        ++HEI  PLTA+ GF +++K+       N     Y N +      + 
Sbjct: 402 VV-----GQLATVMAHEINNPLTAMKGFMQLLKSTE-----NENNQGYINIVSSEIERIE 451

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
            I  + + ++K +  KM L+    ++   + + + L+Q  A    I  R      IP I 
Sbjct: 452 SITTEFMAVAKPQVVKMQLN----NISVLMDQVLMLLQPQAMMHNIKFRIDLNPGIPLIS 507

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
            +   +KQ+ +NIL NAI   P GG+I+I      N +V +R  D G G+    +    +
Sbjct: 508 CEGNQLKQVFVNILKNAIESMPMGGEILIQINILDNNQVSIRFIDQGCGIPKERIPYLGE 567

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           PF        I+ EG GLGL +   +++ + GK +I S   KGT +E+  P+
Sbjct: 568 PFY------SIKEEGIGLGLMICYKIIETHQGKIFIKSEMNKGTTVEVTLPI 613



 Score =  108 bits (271), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 44/286 (15%), Positives = 91/286 (31%), Gaps = 21/286 (7%)

Query: 313 AYFDEGENLTPETVDKCPIPFF----VYSHGNLFYANPSFLLLTKYKSVDDIEI-AGGLS 367
               + +    +TV +     F    V  H      +  F     + S   +      + 
Sbjct: 3   RELKKSKQELTDTVHELQGGIFKFKKVDKHFIHTLCDGQFYYQNGFYSEQVVGKSLRTID 62

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
             +  P L          L   +   I        + W  + ++ +         +  + 
Sbjct: 63  ASIIPPHLVPQLMKY--YLQAWEGKEIIFE-----LPWPNDKTIILI--ALRPIKRNGQV 113

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
           +   G   +  + +  + ++      L S ++   D I I +REG IL  N+A  K+FG+
Sbjct: 114 IEVVGSTVDITERKKVESELSATKELLESFIKHNLDAITISDREGHILQANKAYEKIFGW 173

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
             ++I+ K     +           + +IL           T+    +  LL + + +  
Sbjct: 174 SSQEIIGKRL-PCVPDFLMEESLENIQKIL-TGESVVTRLETVRQRSDGSLLDISLTVSP 231

Query: 548 LPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
           +               DISE KQ + +     +   ++S  K   L
Sbjct: 232 ILDVRGNVIALSAICRDISERKQAERERHRLHQQL-RDSEMKYRAL 276



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 37/286 (12%), Positives = 84/286 (29%), Gaps = 23/286 (8%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG-KTT 148
           D  G++ + ++   K  G  + ++IG RL  V D L  +   +I  +L  ++     +T 
Sbjct: 155 DREGHILQANKAYEKIFGWSSQEIIGKRLPCVPDFLMEESLENIQKILTGESVVTRLETV 214

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +G+ L + + ++  PI              I               RL ++     
Sbjct: 215 RQRSDGSLLDISLTVS--PILDVRGNVIALS--AICRDISERKQAERERHRLHQQLRDSE 270

Query: 209 EIKKGHSSVEKEKYDIFSQQS-----------PPPHLR---MKNKVSSLTEY-YAHKDDV 253
              +       +   +                P    R    + ++ SL+      +D  
Sbjct: 271 MKYRALIEQATDAVYVVELNEDNAPSRFIEVNPVGCRRFGYSREELLSLSFSNIVPQDSQ 330

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
           +       +   ++S   Q+++        T +               +LS     +   
Sbjct: 331 IIVRLLEKIKKGQTSFTLQDEYVFPTGKVITTEFSVRVFN--LNGKKVFLSISRDITERL 388

Query: 314 YFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVD 358
             +E    + +      +     +   N   A   F+ L K    +
Sbjct: 389 KTEELLRKSEKLAVVGQLATVMAHEINNPLTAMKGFMQLLKSTENE 434


>gi|254559131|ref|YP_003066226.1| PAS sensor signal transduction histidine kinase [Methylobacterium
           extorquens DM4]
 gi|254266409|emb|CAX22173.1| putative PAS sensor signal transduction histidine kinase
           [Methylobacterium extorquens DM4]
          Length = 786

 Score =  326 bits (836), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 118/643 (18%), Positives = 246/643 (38%), Gaps = 57/643 (8%)

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
            I+  + +    +          P   +     ++T         +   +       E +
Sbjct: 122 RIRAAYPAPAPAETFAGYLADGEPIAILGESAGAMTVNLQAGGQAVVAARRLSDGMGEVA 181

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
           + ++ +    N  +                +    ++      +   DE  +L  + +D 
Sbjct: 182 VVQRFEPLADNWWRMFGHHAVSLSAIALVLAGMATAYILQTQRAQAADEVCDLVKQRLDT 241

Query: 329 C----PIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
                    + +       + + S   L  Y    D+   G ++ LL A      +  + 
Sbjct: 242 ALGRGRCGLWDWDIARGTIFWSDSMYALLGYTPEKDLLSFGDVNALLHAEDGDLYSLARH 301

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
           +    +             I+      + +        +    +    GI  +  + R  
Sbjct: 302 LAASHATVD------HEFRIRDASGEWIWLRTRAEIVEDAVDGSRHLVGIAMDVTEQRRL 355

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRKPFTVFLE 502
                   M+L   +EA S+   + +    ++  N     L      + +  + +   + 
Sbjct: 356 AEFTATADMRLRDAVEAVSEAFVLWDASNRLVLCNSKFRDLHALASEDAVPGRRYDEIMG 415

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
           +     +   +         +T E        + + L +    ++      Y     DI+
Sbjct: 416 RGALPPVRRGIPG-SERGPSRTFEVELT----DGRWLQVS---ERRTKDGGYVSVGTDIT 467

Query: 563 EWKQEKNKLSHAKKIAEK-----------------------------------ESSHKSD 587
             K+ + +L  +++   +                                    +  KS+
Sbjct: 468 SLKRHQEQLVTSERELIETVKDLKRSRRTLETQTQQLADLAERHLDQKARAEIANQAKSE 527

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           FLA +SHE+RTPL AI+GF+E+++++ +G LG+PRY +Y   I +SG  +L +++D+L +
Sbjct: 528 FLANMSHELRTPLNAIMGFAELMESEVYGSLGSPRYADYCRDIQQSGTYLLSVIDDILHM 587

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707
           S+IE+ ++ L    + L  A++ A++LV   A  K + I    A  +  +LAD R+++QI
Sbjct: 588 SRIEAKRVKLVRRDIDLGTALNSALTLVSKEAASKSVSIDLELAGTL-HVLADERALQQI 646

Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
            LNI+ NA+ FTP  G++ +    + N  V L + DTG+G+    + K  +PF Q+  + 
Sbjct: 647 LLNIIQNAVKFTPEQGRVALR-GRSCNGFVHLFIGDTGIGIPKTAISKLGRPFEQVETNL 705

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
               +G+GLGL +A++  + + G   I S    GTL+ +  P+
Sbjct: 706 TRSYKGSGLGLAIARSTAELHGGSLRIRSEEGIGTLVLVRLPM 748


>gi|119490557|ref|ZP_01622999.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
 gi|119453885|gb|EAW35041.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
          Length = 1056

 Score =  326 bits (836), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 99/395 (25%), Positives = 178/395 (45%), Gaps = 29/395 (7%)

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR--EGIILSTNRAVSKLFGYP 488
            G+E +  +     ++++    +     + T + I  INR  +      N +  +L GY 
Sbjct: 436 QGLEQKVTER---TQELQQSQQKFSIAFQNTPNPII-INRMSDHSYFDVNESFCQLTGYT 491

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            E+IL K                +   +++    +  E      + + +   L   + ++
Sbjct: 492 HEEILGKTSLDLNLWVNLKDYEQFYQTLITEGKLRNYEFNYRTKSGKIRTALLSADLIEI 551

Query: 549 PFSSCYSLTMHDISEWKQEKN-------KLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
                   + +DI+E KQ +N       +L  A+K A+  +  KS FLA +SHE+RTPL 
Sbjct: 552 NSEQYLLSSSNDITERKQVENQLQTQNIELEIARKNADAANQAKSTFLANMSHELRTPLN 611

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           AI+GFS+++         +         I+RSG  +L ++ND+LD+SKIE GK+ L  +P
Sbjct: 612 AILGFSQLMAQNPIFVSASKE----LEIINRSGEHLLSLINDILDLSKIEVGKVVLEEKP 667

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
                 +     ++++ AN K I + +        I  D   ++Q+ +N++ NAI FT  
Sbjct: 668 FDFYILLDTLEEMLKMRANAKGIQLISERDQIPQYIKTDENKLRQVLINLIGNAIKFTNQ 727

Query: 722 GGQIIISTTHTSNE----------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           G  I +     S +          ++   V DTG G++  E+++    F Q    +Q + 
Sbjct: 728 GS-ITLRVDSHSPDVNSLTPNSPVQLFFEVEDTGAGISTEEIDQLFDAFVQTSAGKQSQ- 785

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           +GTGLGL +++  V    GK  + S   KG+L + 
Sbjct: 786 QGTGLGLSISRKFVQLMGGKISVKSQLGKGSLFQF 820


>gi|163943361|ref|YP_001642591.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           weihenstephanensis KBAB4]
 gi|163865558|gb|ABY46616.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           weihenstephanensis KBAB4]
          Length = 801

 Score =  326 bits (836), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 105/532 (19%), Positives = 210/532 (39%), Gaps = 47/532 (8%)

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVD----KCPIPFFV-YSHGNLFYANPSFLLL 351
            +  E +      +     +     T E ++           +    G++  AN ++  +
Sbjct: 294 GQVIEVVGSTVDITERKKVESELRATKELLESFIKHNVDAITISDREGHILQANKAYEKI 353

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ-WNRENS 410
             + S + I            P + D    + +   +   T  +   RL T++  N  + 
Sbjct: 354 FGWSSHEIIGKRL--------PCVPDFLMDESLGNIQKILTGESVVTRLETVRQRNDGSL 405

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK-------MEIEVMQLCSILEATSD 463
           L ++       +     +  + I  +  + +  +R+       +    M+  +++E  +D
Sbjct: 406 LDVSLTVSPILDVRGNVIALSAICRDISERKQAERERQRLHQQLRDSEMKYRALIEQATD 465

Query: 464 GIAI--INREG---IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
            + +  +N +      +  N      FGY  E++L  PF   +      ++   L +I  
Sbjct: 466 AVYVVELNEDQFPSRFIEVNPVGCNRFGYSREELLSMPFPNNV-PQDSPIIIQLLEKIRE 524

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578
                TL+   +  T +       + I  L     +     DI+E  + +  L  ++K+A
Sbjct: 525 GQTSFTLQDEHIFPTGKTITTEFSVRIFNLNGKKVFLSISRDITERLKTEELLRKSEKLA 584

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
                        ++HEI  PLTA+ GF +++K+       N     Y N +      + 
Sbjct: 585 VV-----GQLATAIAHEINNPLTAMKGFMQLLKSTE-----NENNQGYINIVSSEIERIE 634

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
            I N+ + ++K +     +  +P  +     + + ++Q  A    I IRT +   IP I 
Sbjct: 635 SITNEFMAVAKPQ----VVRIQPNDISVLTDQVLLILQPQAMMNNIQIRTDYTPGIPLIP 690

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
            +   +KQ+ +NIL NAI   P GG+I+I      N+++ +R  D G G+    +    +
Sbjct: 691 CEGNQLKQVFVNILKNAIESMPMGGEILIQIDKLDNDQISIRFIDQGCGIPKERIPYLGE 750

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           PF        I+ EG GLGL +   +++ + GK +I S   KGT +E+  P+
Sbjct: 751 PFY------SIKEEGIGLGLMICYKIIETHQGKVFIESEVNKGTTVEVTLPI 796



 Score =  107 bits (267), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 42/268 (15%), Positives = 86/268 (32%), Gaps = 33/268 (12%)

Query: 392 TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV 451
                   +  + W  + ++ +         +  + +   G   +  + +  + ++    
Sbjct: 263 QAWEGKEIIFELPWPNDKTIILI--ALRPIKRNGQVIEVVGSTVDITERKKVESELRATK 320

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
             L S ++   D I I +REG IL  N+A  K+FG+   +I+ K     +          
Sbjct: 321 ELLESFIKHNVDAITISDREGHILQANKAYEKIFGWSSHEIIGKRL-PCVPDFLMDESLG 379

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS----LTMHDISEWKQE 567
            + +IL           T+    +  LL + + +  +               DISE KQ 
Sbjct: 380 NIQKIL-TGESVVTRLETVRQRNDGSLLDVSLTVSPILDVRGNVIALSAICRDISERKQA 438

Query: 568 KNKLSHAKKIAEKES-------SHKSDFLARVSHEIR-----------TPLTAII-GFS- 607
           + +     +                +D +  V  E+             P+     G+S 
Sbjct: 439 ERERQRLHQQLRDSEMKYRALIEQATDAVYVV--ELNEDQFPSRFIEVNPVGCNRFGYSR 496

Query: 608 EVIKNQRFG---PLGNPRYIEYANYIDR 632
           E + +  F    P  +P  I+    I  
Sbjct: 497 EELLSMPFPNNVPQDSPIIIQLLEKIRE 524



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 37/287 (12%), Positives = 83/287 (28%), Gaps = 25/287 (8%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG-KTT 148
           D  G++ + ++   K  G  + ++IG RL  V D L  +   +I  +L  ++     +T 
Sbjct: 338 DREGHILQANKAYEKIFGWSSHEIIGKRLPCVPDFLMDESLGNIQKILTGESVVTRLETV 397

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +G+ L V + ++  PI              I              +RL ++     
Sbjct: 398 RQRNDGSLLDVSLTVS--PILDVRGNVIALS--AICRDISERKQAERERQRLHQQLRDSE 453

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLR--------------MKNKVSSLT-EYYAHKDDV 253
              +       +   +          R               + ++ S+       +D  
Sbjct: 454 MKYRALIEQATDAVYVVELNEDQFPSRFIEVNPVGCNRFGYSREELLSMPFPNNVPQDSP 513

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
           +  +    +   ++S   Q++         T +               +LS     +   
Sbjct: 514 IIIQLLEKIREGQTSFTLQDEHIFPTGKTITTEFSVRIFN--LNGKKVFLSISRDITERL 571

Query: 314 YFDEGENLTP--ETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVD 358
             +E    +     V +       +   N   A   F+ L K    +
Sbjct: 572 KTEELLRKSEKLAVVGQLATAIA-HEINNPLTAMKGFMQLLKSTENE 617


>gi|229000253|ref|ZP_04159822.1| hypothetical protein bmyco0003_48060 [Bacillus mycoides Rock3-17]
 gi|229007776|ref|ZP_04165364.1| hypothetical protein bmyco0002_46550 [Bacillus mycoides Rock1-4]
 gi|228753484|gb|EEM02934.1| hypothetical protein bmyco0002_46550 [Bacillus mycoides Rock1-4]
 gi|228759585|gb|EEM08562.1| hypothetical protein bmyco0003_48060 [Bacillus mycoides Rock3-17]
          Length = 611

 Score =  326 bits (836), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 84/375 (22%), Positives = 160/375 (42%), Gaps = 23/375 (6%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +  +   E E  +L S+L   +DG+   +R+G I+  N    K+     E  L +     
Sbjct: 256 QQARSSTESERRKLSSVLSHMTDGVIATDRKGDIILLNDPAEKMLNVSRETALDQSVLEV 315

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
           L       ++H   E  S+ L  +                  +I K+   ++     ++D
Sbjct: 316 LGIQEEFTLDHLYEEPDSVLLDFSTRNEPYILRAS-----FSVIQKETGKANGLIAVLYD 370

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           ++E ++                  + +F+A VSHE+RTPLT +  + E + +  +     
Sbjct: 371 VTEQERI--------------DRERREFVANVSHELRTPLTTMRSYLEALSDGAWQDPNI 416

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
                +          ++ +VN LL +SK++S +  L  E V   +  +  I   +  + 
Sbjct: 417 APQ--FLTVTQEETERMIRLVNALLQLSKLDSTEHRLMKEWVDFTDFFNNVIDRFE-MSK 473

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
           E+ ++ + SF+     I  D   + Q+  NI+SNA+ ++P GG +        +  + + 
Sbjct: 474 EQNVIFKRSFSKKSRFIDMDADKITQVLYNIISNALKYSPEGGTVTYRLRDRED-MLEIS 532

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V D G+G+    +EK  + F ++  ++  +  GTGLGL +AK M++A+ G  +  S   K
Sbjct: 533 VSDQGMGIPKENVEKIFERFYRVDKARSRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEGK 592

Query: 801 GTLIEIIFPLYDTSH 815
           GT I    P+     
Sbjct: 593 GTTIYFTLPMAKEEE 607


>gi|309807799|ref|ZP_07701731.1| PAS domain S-box protein [Lactobacillus iners LactinV 01V1-a]
 gi|308168901|gb|EFO70987.1| PAS domain S-box protein [Lactobacillus iners LactinV 01V1-a]
          Length = 612

 Score =  326 bits (836), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 85/392 (21%), Positives = 173/392 (44%), Gaps = 29/392 (7%)

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
           ++  E      I    ++        + E  +L ++L   +DG+   +R G I   N   
Sbjct: 232 DEMGELARAFNILSVRIERSQEVS--DSERRRLDNVLMHMTDGVIATDRHGNITIINETA 289

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
                    ++  +P T  L     +     + +++S      +        +       
Sbjct: 290 LNFLDKTENEVKGEPITQLLGLKEVT-----IQDLMSTQQELIVTANVNTHDELILHADF 344

Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
            +I +   F S     +HDI+E ++ +N+              +  F++ VSHE+RTPLT
Sbjct: 345 SLIQRVTGFVSGLICVLHDITEQQKNENE--------------QRQFVSNVSHELRTPLT 390

Query: 602 AIIGFSEVIKNQRFGPLGNPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
           ++  + E + +   G   N     ++   I      ++ ++NDLL++S+++ G + +  E
Sbjct: 391 SLRAYVEALND---GAWKNENIAPQFLGVIQNETERMIRMINDLLNLSRMDRGVVKMDLE 447

Query: 661 PVSLDEAVSEAISLVQLYANEKRIL---IRTSFANNIPRILADLRSVKQIALNILSNAIH 717
            V+L++ +S  ++   +      +    IR  F +    +  D   + Q+  NI++NAI 
Sbjct: 448 WVNLNDFLSHILNRFDMMLKNDGVKKYKIRRIFPHQALWVEIDTDKMMQVIDNIMNNAIK 507

Query: 718 FTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
           ++P GG I I     +++ VIL + D G+G+   +L +    F ++  ++  +  GTGLG
Sbjct: 508 YSPDGGLITIRL-LQTHKHVILSISDQGLGIPRKDLSRIFDRFYRVDKARSRKQGGTGLG 566

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           L ++K +V+A+ GK +  S+   G+   I  P
Sbjct: 567 LAISKEIVEAHHGKIWADSSEGNGSTFYISIP 598


>gi|319791369|ref|YP_004153009.1| signal transduction histidine kinase with cheb and cher activity
            [Variovorax paradoxus EPS]
 gi|315593832|gb|ADU34898.1| signal transduction histidine kinase with CheB and CheR activity
            [Variovorax paradoxus EPS]
          Length = 1370

 Score =  326 bits (836), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 126/624 (20%), Positives = 210/624 (33%), Gaps = 31/624 (4%)

Query: 201  DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS-LTEYYAHKDDVLKTEKY 259
                    E ++    V  E  +        P    +  +   L E        L+    
Sbjct: 625  RPLQPAEGESQQLTLVVFDEVEESMRANDGEPVDAARELLIGQLEEEIRQLKLHLQDTVE 684

Query: 260  PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG- 318
               TS E      E+   IN    +  +   T +   +   E L   N        + G 
Sbjct: 685  SGETSTEELKASNEELQAINEELRSASEELETSKEELQSMNEELVTVNFELKVKVEERGH 744

Query: 319  -ENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
              +     +    I   FV    ++    P    L      D       +++ L+ P+L 
Sbjct: 745  INDDLQNLIASSEIATVFVDRGMHVKRYTPHAGNLFNLIPSDLGRSLFDITSRLEYPELE 804

Query: 377  DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
            ++ A     L   +R   +   R                          +         +
Sbjct: 805  EDTAAAFNELRTIERHVPSTDGR------------HFLARILPYRTAEDKIEGAILNFFD 852

Query: 437  DVDTRINKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
              + R  + K+     +L  +   T D  I   +  G+I + N    ++FGY  E++LR+
Sbjct: 853  ISELRFAQDKVRAGEERLRLVAATTRDFAIITTDEAGLITTWNAGAQRIFGYTEEEMLRR 912

Query: 496  PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP--FSSC 553
            P  V       +       E+                 K+        +   L       
Sbjct: 913  PIAVIFTAEDQAHGVPQ-QEMRRATETGRAADERWHERKDGSRFFCSGVTSSLDPASGGG 971

Query: 554  YSLTMHDISEWKQEKNKLSHA-------KKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
            ++    D++  KQ++    H           A+  +  K  FLA +SHE++ PL  I   
Sbjct: 972  FAKIARDMTGTKQQELAQEHRLFKEKQANLSAQMANELKDKFLAVMSHELKQPLNLIQMN 1031

Query: 607  SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
            +E +          P        I R+      I+NDLLD+S+I +GK+ L    V L E
Sbjct: 1032 AE-LLMHLPAAAQIPAVQRVGETIKRAVASQTRIINDLLDLSRIRTGKLRLSRVTVDLGE 1090

Query: 667  AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726
             V          A +K++L+ T     +     D   V+QIA N+LSNA+ FTP GG+I 
Sbjct: 1091 LVQSVAQAAVADAPKKKLLLETHCDEAV-HCHGDRVRVEQIAWNLLSNAVKFTPDGGRIS 1149

Query: 727  ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
            +    T  +   L V DTG G+    L      F Q      +   G G+GL L + +  
Sbjct: 1150 VRVE-TEGDFARLTVADTGCGIAAEFLPHVFGMFNQADGDTALPNGGLGIGLALVQELAL 1208

Query: 787  ANMGKFYIFST-PAKGTLIEIIFP 809
            A+ G+  + S  P +G    +  P
Sbjct: 1209 AHGGRAEVKSAGPGEGAEFTVWLP 1232



 Score = 40.4 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 22/245 (8%), Positives = 60/245 (24%), Gaps = 16/245 (6%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID---PNNHIGDLLKRQNTWYG 145
             D  G +   +    +  G    +M+   +  +          P   +    +       
Sbjct: 885  TDEAGLITTWNAGAQRIFGYTEEEMLRRPIAVIFTAEDQAHGVPQQEMRRATETGRA-AD 943

Query: 146  KTTLWPIEGTNLYVP-IDLAALPIYSRNREFSGFRGFG-IVHVNRVDNDPRALGKRLDKK 203
            +      +G+  +   +  +  P            GF  I              +    K
Sbjct: 944  ERWHERKDGSRFFCSGVTSSLDPASGG--------GFAKIARDMTGTKQQELAQEHRLFK 995

Query: 204  FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
                  +    ++  K+K+           L +    + L  +      +   ++     
Sbjct: 996  EKQ-ANLSAQMANELKDKFLAVMSHELKQPLNLIQMNAELLMHLPAAAQIPAVQRVGETI 1054

Query: 264  SEESSLPEQEDFHTINLNQ-YTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
                +   +     ++L++  T K     +  +  E  + ++              E   
Sbjct: 1055 KRAVASQTRIINDLLDLSRIRTGKLRLSRVTVDLGELVQSVAQAAVADAPKKKLLLETHC 1114

Query: 323  PETVD 327
             E V 
Sbjct: 1115 DEAVH 1119



 Score = 38.9 bits (89), Expect = 3.9,   Method: Composition-based stats.
 Identities = 41/453 (9%), Positives = 102/453 (22%), Gaps = 52/453 (11%)

Query: 184 VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL 243
                +  D  A    L+     L           +    + S  +P        +V+  
Sbjct: 434 CRNLLIYLDRAAQAHVLEMFRIALKPGGYLFLGTSESIDAVGSLFTPVDKKNRIFRVNPD 493

Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG---TLQNNSKESF 300
                H   +      P   +        +   +   +     Q      +  +    + 
Sbjct: 494 LPPGRHMPLISDMPPAPQAGTFVPPRRTSKRTGSERASFAELHQAALEQFSPPSVLINAE 553

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDI 360
             + H ++             +   ++       +     LF AN +   +         
Sbjct: 554 HEVLHLSNGVGRFLERASGEPSNNLLNNVRPDIRLELRTALFKANQTARSVETRLVQRQE 613

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
                   ++  P        + + L   D    +  A            L        +
Sbjct: 614 NGHQVFLNIIVRPLQPAEGESQQLTLVVFDEVEESMRANDGEPVDAARELLIGQLEEEIR 673

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS------------------------ 456
             +          E    + + +  +++    +L S                        
Sbjct: 674 QLKLHLQDTVESGETSTEELKASNEELQAINEELRSASEELETSKEELQSMNEELVTVNF 733

Query: 457 ------------------ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
                             ++ ++      ++R   +         LF     D+ R  F 
Sbjct: 734 ELKVKVEERGHINDDLQNLIASSEIATVFVDRGMHVKRYTPHAGNLFNLIPSDLGRSLFD 793

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSL 556
           +      P +          L             + + +    RI+  +          L
Sbjct: 794 ITSRLEYPELEEDTAAAFNELRT-----IERHVPSTDGRHFLARILPYRTAEDKIEGAIL 848

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
              DISE +  ++K+   ++     ++   DF 
Sbjct: 849 NFFDISELRFAQDKVRAGEERLRLVAATTRDFA 881


>gi|192359662|ref|YP_001981685.1| response regulator receiver domain-containing protein [Cellvibrio
           japonicus Ueda107]
 gi|190685827|gb|ACE83505.1| Response regulator receiver domain protein [Cellvibrio japonicus
           Ueda107]
          Length = 1061

 Score =  326 bits (836), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 101/388 (26%), Positives = 169/388 (43%), Gaps = 29/388 (7%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
           +R++        S+L      + +   +G +   N A   L      D+L +P       
Sbjct: 358 RRRLAKREGHFRSLLNHIPAPVYMCALDGTLTVVNPAFCALVNIVKSDLLGQPLRAMAAP 417

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT---MHD 560
              S +   +   ++      +  +    T E+K   +         S  Y      + D
Sbjct: 418 RWLSPLLSTMERAIAKRGLSDVHLVLRTPTGEQKYFHVLHFPVVYEASGAYEALACFILD 477

Query: 561 ISEW-----------KQEKN-------KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
            +E            ++ +        +L  AK+ A   S  K+DFLA +SHEIRTPL A
Sbjct: 478 ETERLVANQHMENINQRLEQLVDERTVELIQAKEEALAASRAKADFLANMSHEIRTPLNA 537

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           IIG + V          NP    Y   +  SG  +L+++ND+L+ S++E+GK+ L     
Sbjct: 538 IIGLAHVALAMEM----NPNLRNYLQKMRASGEHLLEVINDILNFSRLEAGKLKLDQVEF 593

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPS 721
           +L + +  AI+LV   A  K + ++   A  I P +  D   + QI +N+ +NA+ FT  
Sbjct: 594 ALVDVIQRAINLVSDKAEAKGLSLQVEIAPEISPWLKGDPLRLGQILINLCANAVKFTDQ 653

Query: 722 GG-QIIISTTHTSNEEV--ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
           G  Q+++       + +  I+ VRDTG+G+    L    +PF Q+ NS   R EGTGLGL
Sbjct: 654 GCIQLLVQQKARRGDAINLIIDVRDTGIGIAPGLLASLFQPFHQVDNSNTRRFEGTGLGL 713

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEI 806
            + K++ D       + S   KG+   +
Sbjct: 714 AICKSLADLMDAHLSVESEMGKGSCFRL 741



 Score = 44.6 bits (104), Expect = 0.066,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 70/234 (29%), Gaps = 13/234 (5%)

Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKY-----PLLTSEESSLPEQEDFHTINLNQYTKK 286
           P  RM   + +  +     D               L   +  +  ++D      +    +
Sbjct: 274 PLTRMAAALIARNDVSLLMDYRDYRGVAVVGAGRWLEDLDMGIIVEQDLDEAFASYTVAR 333

Query: 287 QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY-SHGNLFYAN 345
                L + S  +   L   +         + E      ++  P P ++    G L   N
Sbjct: 334 NLVIGL-SLSAITLILLLTLSAMINRRRLAKREGHFRSLLNHIPAPVYMCALDGTLTVVN 392

Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405
           P+F  L      D +     L  +     LS    +  +    + R        L T   
Sbjct: 393 PAFCALVNIVKSDLLGQP--LRAMAAPRWLSP--LLSTMERAIAKRGLSDVHLVLRTPTG 448

Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459
            ++    + F    +A+   E +    +  ++ +  +  + ME    +L  +++
Sbjct: 449 EQKYFHVLHFPVVYEASGAYEALACFIL--DETERLVANQHMENINQRLEQLVD 500



 Score = 43.5 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 13/149 (8%), Positives = 40/149 (26%), Gaps = 2/149 (1%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151
            G L  ++      +      ++G  L  ++    + P     +    +        +  
Sbjct: 385 DGTLTVVNPAFCALVNIVKSDLLGQPLRAMAAPRWLSPLLSTMERAIAKRGLSDVHLVLR 444

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
                      L    +Y  +  +     F  +             + ++++   L + +
Sbjct: 445 TPTGEQKYFHVLHFPVVYEASGAYEALACF--ILDETERLVANQHMENINQRLEQLVDER 502

Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKV 240
                  KE+    S+        M +++
Sbjct: 503 TVELIQAKEEALAASRAKADFLANMSHEI 531


>gi|291484739|dbj|BAI85814.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           natto BEST195]
          Length = 589

 Score =  326 bits (836), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 89/364 (24%), Positives = 157/364 (43%), Gaps = 24/364 (6%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            +  E  QL +IL + +DG+  IN +G IL TN    +           +   +    N 
Sbjct: 247 ALNQEKEQLSNILSSMADGVITINIDGTILVTNPPAERFL---QAWYYEQNMNIKEGDNL 303

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
           P          +S +  Q +E    G       + L   +            + D++E +
Sbjct: 304 PPEAKELFQNAVSTEKEQMIEMTLQGR----SWVLLMSPLYAESHVRGAVAVLRDMTEER 359

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           +                  + DF+A VSHE+RTP++ + G+SE I +            E
Sbjct: 360 RL--------------DKLREDFIANVSHELRTPISMLQGYSEAIVDDI--ASSEEDRKE 403

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
            A  I      +  +VNDLLD++++ESG   LH+E ++++E + + I      A EK I 
Sbjct: 404 IAQIIYDESLRMGRLVNDLLDLARMESGHTGLHYEKINVNEFLEKIIRKFSGVAKEKNIA 463

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           ++   +      + D   ++Q+  N++ NA+  T SGG + IS     +  + + ++D+G
Sbjct: 464 LQNDISLTEEEFMLDEDKMEQVFTNLIDNALRHTSSGGSVSISVHSVKDG-LKIDIKDSG 522

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
            G+   +L    + F +   ++     GTGLGL + K +V+A+ G   + S   KGT   
Sbjct: 523 SGIPEEDLPFIFERFYKADKARTRGRAGTGLGLAIVKNIVEAHNGSITVHSRIDKGTTFT 582

Query: 806 IIFP 809
              P
Sbjct: 583 FYIP 586


>gi|332559833|ref|ZP_08414155.1| histidine kinase [Rhodobacter sphaeroides WS8N]
 gi|332277545|gb|EGJ22860.1| histidine kinase [Rhodobacter sphaeroides WS8N]
          Length = 849

 Score =  326 bits (836), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 123/604 (20%), Positives = 230/604 (38%), Gaps = 57/604 (9%)

Query: 235 RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES-SLPEQEDFHTINLNQYTKKQYFGTLQ 293
            ++ K++         + +L+ ++  L  + E  ++  +     I   +   K      +
Sbjct: 2   DIEQKLAKERRARLAAERLLEYKQRELFAANEKLAIHARALSDQIIEQRAVVKTALSEAE 61

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSF---- 348
               ++  +LS              E    +++D     F V+  G  L  AN ++    
Sbjct: 62  KLKGQNSRFLSEL--ERAHTAAVMAERRLWDSIDAIEDGFAVFDAGQRLVAANEAYRCHF 119

Query: 349 --LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
             L +    ++ D+        L+D      +   + ++    +        R  T QW 
Sbjct: 120 EGLEVRPGMALADLLQLATTHGLIDLRGEPADLWQQRMIRRWDEDPVEPEIVRRCTGQW- 178

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
                          N+   +     +  +  +             +L + ++A  DG  
Sbjct: 179 -----------LRLVNRRARDGDMVSLLIDITEQM-----------RLRAAIDAIPDGFV 216

Query: 467 IINREGIILSTNRAVSKLF---------GYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
           + +R   ++  N     ++         G P E+ILR                 +L + L
Sbjct: 217 LFDRAERLVLCNDRYRAIYPRSAEALRPGAPFEEILRHGLAHGQFPEAAGREEEWLADRL 276

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI 577
           +                + + L +   I+             DI+E K+++  L  A+  
Sbjct: 277 AAFRHLGGAAE--QQLDDGRWLRV---IEHETPDGGRVGLGVDITELKRQQAALESARAA 331

Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
           AE  S  KS FLA +SHEIRTP+  I+G ++++               ++  I  SG  +
Sbjct: 332 AEAASRAKSAFLANMSHEIRTPMNGIVGMADLLCETVL----TEDQRLFSETIRSSGEAL 387

Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-R 696
           L I+ND+LD SKIE+ ++ LH EP  L+  + E   L+Q  A  K I +   F   +P R
Sbjct: 388 LVIINDILDYSKIEANRLTLHPEPFDLERTIHEVAMLLQPKARAKGIDLLIDFDLFLPTR 447

Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT---SNEEVILRVRDTGVGMTNYEL 753
            + D   ++Q+  N++ NA+ FT +G  +I            ++ + V DTG+G+    L
Sbjct: 448 FVGDPGRLRQVLTNLIGNAVKFTAAGHVLIRVVGLEVAPGRHDLRVTVEDTGIGIAPEHL 507

Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL--IEIIFPLY 811
           +     F QI      R EGTGLGL + + +++   G  ++ S P +G+     +  P  
Sbjct: 508 DHVFGEFNQIEAEATRRFEGTGLGLAITRRLIELMQGAVWVESEPGRGSCFGFRLTLPAA 567

Query: 812 DTSH 815
           D   
Sbjct: 568 DDEA 571


>gi|121997120|ref|YP_001001907.1| PAS/PAC sensor hybrid histidine kinase [Halorhodospira halophila
           SL1]
 gi|121588525|gb|ABM61105.1| PAS/PAC sensor hybrid histidine kinase [Halorhodospira halophila
           SL1]
          Length = 639

 Score =  326 bits (836), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 89/503 (17%), Positives = 191/503 (37%), Gaps = 30/503 (5%)

Query: 333 FFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR 391
            F++     +  AN ++L      + +++                   A +  M      
Sbjct: 20  VFLHDGDYRILRANRAYLEWAGASTEEEVIGRPYWEVF--PRGDGPLPACRRAMEQLGAG 77

Query: 392 TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV 451
           +  A      + +    +        +              I  +  + R  ++  +   
Sbjct: 78  SPQAGDGVESSEEIELPSGEIFRSRSYTVREADGSYRCSVHILEDITEQRRLEQARQGAE 137

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
            ++ +I  A  D I +I+ +  ++  N A   L GY   +++  PF   +  +       
Sbjct: 138 AKVKAIAAAARDAIVLIDDDDRLVYCNAAFEALLGYEAGELVGSPFHEQVAPSRYRTSAR 197

Query: 512 ---YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY--SLTMHDISEWKQ 566
                  +                 ++   + L + +  L     +     M DISE + 
Sbjct: 198 TGMRRFRVCGGGAVIDQRTEIEALHRDGHEVPLELSVSPLQLDGRWHAVGVMRDISERRA 257

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
            +          ++  + ++ FLA +SH++RTPL AI+GF++++               +
Sbjct: 258 LEVDR-------QRAEADRNIFLAAISHDLRTPLNAIVGFTDLLARSELDT----EQRHH 306

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
                 +   +L +++ +L++S++E+G++ L  E  +L   ++  I L+Q  A EK + +
Sbjct: 307 VGLCRSASQTLLGLIDTVLELSRLEAGRVELRDERFNLPAFLTTQIGLLQPMAEEKGLSL 366

Query: 687 RTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
             S   ++P  +  D     Q+  N++SNA+ FT +G  I +    ++   ++  V DTG
Sbjct: 367 IWSLEPDMPGWVRGDPVRFGQVLYNLVSNALKFTETGS-IRVDGARSTCGRLMFTVADTG 425

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL-- 803
            G+   +  +    F Q       + EG+GLGL + + +V    G   + STP  GT   
Sbjct: 426 PGIPEADQGRIFDAFCQGGPVLARK-EGSGLGLKICQELVRLMGGTIQLVSTPGVGTTFR 484

Query: 804 IEIIFPLYD------TSHPHDCI 820
             +  P  +       + P + +
Sbjct: 485 FTVTLPSAEPDRAEAAAVPQEAV 507



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/343 (7%), Positives = 69/343 (20%), Gaps = 29/343 (8%)

Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254
            + +             +                 P P  R   +            D +
Sbjct: 28  RILRANRAYLEWAGASTEEEVIGRPYWEVFPRGDGPLPACRRAMEQLG--AGSPQAGDGV 85

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
           ++ +   L S E            + +          +    +               A 
Sbjct: 86  ESSEEIELPSGEIFRSRSYTVREADGSYRCSVHILEDITEQRRLEQARQGAEAKVKAIAA 145

Query: 315 FDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
                               +     L Y N +F  L  Y++ + +  +     +  +  
Sbjct: 146 AARDAI------------VLIDDDDRLVYCNAAFEALLGYEAGE-LVGSPFHEQVAPSRY 192

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
            +                 I     +  +  +      +         Q        G+ 
Sbjct: 193 RTSARTGMRRFRVCGGGAVIDQRTEIEALHRDG---HEVPLELSVSPLQLDGRWHAVGVM 249

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR--AVSKLFGYPVEDI 492
            +  + R  +   +       +I       +A I+ +      N     + L      D 
Sbjct: 250 RDISERRALEVDRQRAEAD-RNIF------LAAISHDLR-TPLNAIVGFTDLLARSELDT 301

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
            ++         +   +   +  +L L   +            
Sbjct: 302 EQRHHVGLCRSASQ-TLLGLIDTVLELSRLEAGRVELRDERFN 343



 Score = 50.8 bits (120), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 31/371 (8%), Positives = 78/371 (21%), Gaps = 26/371 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH----IDPNNHIGDLLKRQNTW- 143
           ID    L   +      +G  A +++G    +                   +        
Sbjct: 154 IDDDDRLVYCNAAFEALLGYEAGELVGSPFHEQVAPSRYRTSARTGMRRFRVCGGGAVID 213

Query: 144 -YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA-LGKRLD 201
              +      +G    VP++L+  P+    R    +   G++              +   
Sbjct: 214 QRTEIEALHRDGH--EVPLELSVSPLQLDGR----WHAVGVMRDISERRALEVDRQRAEA 267

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
            +   L  I     +            +       +     L    +     L      L
Sbjct: 268 DRNIFLAAISHDLRTPLNAIVGFTDLLARSELDTEQRHHVGLCRSASQTLLGLIDTVLEL 327

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
              E   +  +++   +     T+      +      S  +    + P       +    
Sbjct: 328 SRLEAGRVELRDERFNLPAFLTTQIGLLQPMAEEKGLSLIWSLEPDMPG--WVRGDPVRF 385

Query: 322 TPETVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
                +           G++      S      +   D               ++ D   
Sbjct: 386 GQVLYNLVSNALKFTETGSIRVDGARSTCGRLMFTVADTGPGIPEAD----QGRIFDAFC 441

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
               +L R + + +        ++        ++                    P     
Sbjct: 442 QGGPVLARKEGSGLGLKICQELVRLMGGTIQLVS------TPGVGTTFRFTVTLPSAEPD 495

Query: 441 RINKRKMEIEV 451
           R     +  E 
Sbjct: 496 RAEAAAVPQEA 506



 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/126 (11%), Positives = 40/126 (31%), Gaps = 15/126 (11%)

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYP-VEDILRKPFTVFLEQNT--PSVMNHYLT 514
           + A    + + + +  IL  NRA  +  G    E+++ +P+     +           + 
Sbjct: 13  INAVHSLVFLHDGDYRILRANRAYLEWAGASTEEEVIGRPYWEVFPRGDGPLPACRRAME 72

Query: 515 EI------LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT--MHDISEWKQ 566
           ++          +  + E          ++   R    +    S       + DI+E ++
Sbjct: 73  QLGAGSPQAGDGVESSEEIEL----PSGEIFRSRSYTVREADGSYRCSVHILEDITEQRR 128

Query: 567 EKNKLS 572
            +    
Sbjct: 129 LEQARQ 134


>gi|117929307|ref|YP_873858.1| PAS/PAC sensor hybrid histidine kinase [Acidothermus cellulolyticus
           11B]
 gi|117649770|gb|ABK53872.1| PAS/PAC sensor hybrid histidine kinase [Acidothermus cellulolyticus
           11B]
          Length = 637

 Score =  326 bits (836), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 112/499 (22%), Positives = 209/499 (41%), Gaps = 16/499 (3%)

Query: 317 EGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
              +L        P+      +  + YA+P+   L              L+    AP   
Sbjct: 1   MSRHLLDAITCSGPVVVLRLDNTGITYASPNAATLLGISPEQARRPETWLAA---APADL 57

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
                  V    +  T                    +  +   +               +
Sbjct: 58  FETLRTAVRGLLAGETTGPIELEGEV--NFGVRPRVLQIVLNPEPTAGRRIRAVFAFLQD 115

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             + R  +R +     QL +I  A+ D IA++  +  +   + A + L G    D +   
Sbjct: 116 VTERRAAERTVADRERQLRAITSASPDVIAVVGPDLRVRFVSDASTGLTGIRASDRIGAR 175

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY-- 554
               +  +    +   +  +L     +             + + L    +          
Sbjct: 176 IGETVHPDDRPALLDGIRAVL-TGAAEDFVVRVRTRHASGRYIVLEGHGRPALGPDGAPT 234

Query: 555 --SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
              +   DISE    + +L  AK+ A+  S+ KSDFL+R+SHE+RTPL  I+GFS++++ 
Sbjct: 235 AAVIVFRDISERLALEAELVRAKEAADAASAAKSDFLSRMSHELRTPLNVILGFSQLLQM 294

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
           +R          E+ N I ++G  +LD++N++LDI++IESG++ L  E VSL + + E +
Sbjct: 295 ERL----TDEQQEWVNQIFKAGRHLLDLINEVLDITRIESGRLALSLEAVSLRDVIGETM 350

Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
             +   A E+ +       ++   + AD + ++Q+ LN++ NAI +   GG +++S    
Sbjct: 351 VALAPLAAEREVTADWVIEDDDVTVRADRQRLRQVMLNLVVNAIKYNRRGGTVLVSARRC 410

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
           ++   ++RV DTG+G+    +E+   PF ++  +  I  EGTG+GLPL   +V    G+ 
Sbjct: 411 AD-RALIRVADTGIGIAPEHIERLFVPFDRL-GADAIDAEGTGVGLPLTLRLVQVMDGEL 468

Query: 793 YIFSTPAKGTLIEIIFPLY 811
            + STP  G++  +  PL 
Sbjct: 469 TVDSTPGDGSVFTVALPLA 487



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/385 (9%), Positives = 89/385 (23%), Gaps = 27/385 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIG-MRLCDVSDILHIDPNNHIGDLLKRQNTWY 144
              +D  G +   S      +G    +          +     +        L    T  
Sbjct: 17  VLRLDNTG-ITYASPNAATLLGISPEQARRPETWLAAAPADLFETLRTAVRGLLAGETTG 75

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
                  +        + +   P  +  R       F  +                +++ 
Sbjct: 76  PIELEGEVNFGVRPRVLQIVLNPEPTAGRRIRAV--FAFLQDVTERRAAERTVADRERQL 133

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSP---PPHLRMKNKVSSLTEYYAHKDDV--LKTEKY 259
             +        +V      +            +R  +++ +      H DD   L     
Sbjct: 134 RAITSASPDVIAVVGPDLRVRFVSDASTGLTGIRASDRIGARIGETVHPDDRPALLDGIR 193

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
            +LT        +      +      + +              +      S     +   
Sbjct: 194 AVLTGAAEDFVVRVRTRHASGRYIVLEGHGRPALGPDGAPTAAVIVFRDISERLALEAEL 253

Query: 320 NLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
               E  D                A   FL    ++    + +  G S LL   +L+D  
Sbjct: 254 VRAKEAADA------------ASAAKSDFLSRMSHELRTPLNVILGFSQLLQMERLTDEQ 301

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE---NMPQNGIEPE 436
                 ++++ R  +     +  I       LA++       +   E    +     E E
Sbjct: 302 QEWVNQIFKAGRHLLDLINEVLDITRIESGRLALSLEAVSLRDVIGETMVALAPLAAERE 361

Query: 437 DVDTRINKR---KMEIEVMQLCSIL 458
                + +     +  +  +L  ++
Sbjct: 362 VTADWVIEDDDVTVRADRQRLRQVM 386



 Score = 46.2 bits (108), Expect = 0.021,   Method: Composition-based stats.
 Identities = 25/345 (7%), Positives = 65/345 (18%), Gaps = 16/345 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +     ++ +S+      G  A   IG R+ +                +           
Sbjct: 147 VGPDLRVRFVSDASTGLTGIRASDRIGARIGETVHPDDRPALLDGIRAVLTGAAEDFVVR 206

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           +     +  Y+ ++    P    +   +      +           A   R  +      
Sbjct: 207 VRTRHASGRYIVLEGHGRPALGPDGAPTAA--VIVFRDISERLALEAELVRAKEAADAAS 264

Query: 209 EIKKGHSSVEKEKYD-----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
             K    S    +       I          R+ ++              L      +L 
Sbjct: 265 AAKSDFLSRMSHELRTPLNVILGFSQLLQMERLTDEQQEWVNQIFKAGRHLLDLINEVLD 324

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
                             +    +    L   + E                  + + L  
Sbjct: 325 ITRIESGRLALSLEAVSLRDVIGETMVALAPLAAEREVTADWVIEDDDVTVRADRQRLRQ 384

Query: 324 ETVDKCPIPFFVYSHGNLFYANP---SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
             ++           G     +    +   L +            +  L         +A
Sbjct: 385 VMLNLVVNAIKYNRRGGTVLVSARRCADRALIRVADTGIGIAPEHIERLFVPFDRLGADA 444

Query: 381 IKP------VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
           I        + L       +     + +   +         +   
Sbjct: 445 IDAEGTGVGLPLTLRLVQVMDGELTVDSTPGDGSVFTVALPLAAP 489


>gi|229185333|ref|ZP_04312516.1| hypothetical protein bcere0004_28870 [Bacillus cereus BGSC 6E1]
 gi|228598066|gb|EEK55703.1| hypothetical protein bcere0004_28870 [Bacillus cereus BGSC 6E1]
          Length = 801

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 108/532 (20%), Positives = 211/532 (39%), Gaps = 47/532 (8%)

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVD-----KCPIPFFVYSHGNLFYANPSFLLL 351
            +  E +      +     +     T E ++                G++  AN ++  +
Sbjct: 294 GQVIEVVGSTVDITERKKVESELRATKELLESFIKHNLDAITISDREGHILQANKAYENI 353

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ-WNRENS 410
             + S + I            P +      + +   +   T  +   RL T++  N  + 
Sbjct: 354 FGWSSQEIIGKRL--------PCVPGFLMEESLENIQKILTNESVVTRLETVRQRNDGSL 405

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK-------MEIEVMQLCSILEATSD 463
           L ++       +     +  + I  +  + +  +R+       +    M+  +++E  +D
Sbjct: 406 LDVSLTVSPILDVRGNVIALSAICRDISERKQAERERHRLHQQLRDSEMKYRALIEQATD 465

Query: 464 GIAI--INREG---IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
            I +  +N +      +  N    K FGY  E++L   F   + Q++  ++   L +I  
Sbjct: 466 AIYVVELNEDHAPSRFIEVNPVGCKRFGYSREELLSLSFPDVVPQDSRMIVR-LLEKIKK 524

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578
                TL+   +  T +       + + KL     +     DI+E  + +  L  ++K+A
Sbjct: 525 GQTSFTLQDEYVFPTGKIITTEFNVRVFKLNGKKVFLSISRDITERLKTEELLRKSEKLA 584

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
                        ++HEI  PLTA+ GF +++K        N     Y N +      + 
Sbjct: 585 IV-----GQLATVMAHEINNPLTAMKGFMQLLKLTE-----NENNQGYINIVSSEIERIE 634

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
            I N+ + ++K +  K+ L+     +   + + + L+Q  A    I IR      IP I 
Sbjct: 635 SITNEFMAVAKPQMVKIQLN----DISVLIDQVLMLLQPQAMMNNIKIRIELKPGIPLIS 690

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
            +   +KQ+ +NIL NAI   P+GG+I+I      N +V +R  D G G+    +    +
Sbjct: 691 CEGNQLKQVFVNILKNAIESMPTGGEILIQVNILDNNQVSIRFIDQGCGIPKERIPYLGE 750

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           PF        I+ EG GLGL +   +++ + GK  I S   KGT++E+  P+
Sbjct: 751 PFY------SIKEEGIGLGLMICYKIIETHRGKVVIESEVNKGTIVEVTLPI 796



 Score =  108 bits (269), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 43/286 (15%), Positives = 91/286 (31%), Gaps = 21/286 (7%)

Query: 313 AYFDEGENLTPETVDKCPIPFF----VYSHGNLFYANPSFLLLTKYKSVDDIEI-AGGLS 367
               + +    +TV +     F    V  H      +  F     + S   +      + 
Sbjct: 186 RELKKSKKELIDTVHELQGGIFKFKKVGKHFIHTLCDGQFYYQNGFYSQQVVGKSLRTID 245

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
             +  P L          L   +   I        + W  + ++ +         +  + 
Sbjct: 246 ASIVPPHLVPQLMKY--YLQAWEGREIIFE-----LPWPNDKTIILI--ALRPIKRNGQV 296

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
           +   G   +  + +  + ++      L S ++   D I I +REG IL  N+A   +FG+
Sbjct: 297 IEVVGSTVDITERKKVESELRATKELLESFIKHNLDAITISDREGHILQANKAYENIFGW 356

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
             ++I+ K     +           + +IL  +        T+    +  LL + + +  
Sbjct: 357 SSQEIIGKRL-PCVPGFLMEESLENIQKIL-TNESVVTRLETVRQRNDGSLLDVSLTVSP 414

Query: 548 LPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
           +               DISE KQ + +     +   ++S  K   L
Sbjct: 415 ILDVRGNVIALSAICRDISERKQAERERHRLHQQL-RDSEMKYRAL 459



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 36/286 (12%), Positives = 81/286 (28%), Gaps = 23/286 (8%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG-KTT 148
           D  G++ + ++      G  + ++IG RL  V   L  +   +I  +L  ++     +T 
Sbjct: 338 DREGHILQANKAYENIFGWSSQEIIGKRLPCVPGFLMEESLENIQKILTNESVVTRLETV 397

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR-------ALGKRLD 201
               +G+ L V + ++  PI              I                     +  +
Sbjct: 398 RQRNDGSLLDVSLTVS--PILDVRGNVIALS--AICRDISERKQAERERHRLHQQLRDSE 453

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPP--------PHLRMKNKVSSLTEYYAHKDDV 253
            K+  L E       V +   D    +                +  +S        +D  
Sbjct: 454 MKYRALIEQATDAIYVVELNEDHAPSRFIEVNPVGCKRFGYSREELLSLSFPDVVPQDSR 513

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
           +       +   ++S   Q+++        T +      +        +LS     +   
Sbjct: 514 MIVRLLEKIKKGQTSFTLQDEYVFPTGKIITTEFNVRVFK--LNGKKVFLSISRDITERL 571

Query: 314 YFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVD 358
             +E    + +      +     +   N   A   F+ L K    +
Sbjct: 572 KTEELLRKSEKLAIVGQLATVMAHEINNPLTAMKGFMQLLKLTENE 617


>gi|163849986|ref|YP_001638029.1| PAS sensor protein [Methylobacterium extorquens PA1]
 gi|163661591|gb|ABY28958.1| PAS sensor protein [Methylobacterium extorquens PA1]
          Length = 786

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 119/643 (18%), Positives = 246/643 (38%), Gaps = 57/643 (8%)

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
            I+  + +    +          P   +     ++T         +   +       E +
Sbjct: 122 RIRAAYPAPAPAETFAGYLADGEPIAILGESAGAMTVNLQAGGQAVVAARRLSHGMGEVA 181

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
           + ++ +    N  +                +    ++      +   DE  +L  + +D 
Sbjct: 182 VVQRFEPLADNWWRMFGHHAVSLSAIALVLAGMATAYILQTQRAQAADEVCDLVKQRLDT 241

Query: 329 C----PIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
                    + +       + + S   L  Y    D+   G ++ LL A      +  + 
Sbjct: 242 ALGRGRCGLWDWDIARGTIFWSDSMYALLGYTPEKDLLSFGDVNALLHAEDGDLYSLARH 301

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
           +    +             I+      + +        +    +    GI  +  + R  
Sbjct: 302 LAASHATVD------HEFRIRDASGEWIWLRTRAEIVEDAVDGSRHLVGIAMDVTEQRRL 355

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRKPFTVFLE 502
                   M+L   +EA S+   + +    ++  N     L      + +  + +   + 
Sbjct: 356 AEFTATADMRLRDAVEAVSEAFVLWDASNRLVLCNSKFRDLHALASEDAVPGRRYDEIMG 415

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
           +     +   +         +T E        + + L +    ++      Y     DI+
Sbjct: 416 RGALPPVRRGIPG-SERGPSRTFEVELT----DGRWLQVS---ERRTKDGGYVSVGTDIT 467

Query: 563 EWKQEKNKLSHAKKIAEK-----------------------------------ESSHKSD 587
             K+ + +L  +++   +                                    +  KS+
Sbjct: 468 SLKRHQEQLVTSERELIETVKDLKRSRRTLETQTQQLADLAERHLDQKARAEIANQAKSE 527

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           FLA +SHE+RTPL AI+GF+E+++++ +G LG+PRY +Y   I +SG  +L +++D+L +
Sbjct: 528 FLANMSHELRTPLNAIMGFAELMESEVYGSLGSPRYADYCRDIQQSGTYLLSVIDDILHM 587

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707
           S+IE+ ++ L    + L  A++ A++LV   A  K + I    A  +  +LAD R+++QI
Sbjct: 588 SRIEAKRVKLVRRDIDLGTALTSALTLVAKEAASKSVSIDLELAGTL-HVLADERALQQI 646

Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
            LNI+ NA+ FTP  G+I +    + N  V L + DTG+G+    + K  +PF Q+  + 
Sbjct: 647 LLNIIQNAVKFTPERGRIALR-GRSCNGFVHLFIGDTGIGIPKTAISKLGRPFEQVETNL 705

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
               +G+GLGL +A++  + + G   I S    GTL+ +  P+
Sbjct: 706 TRSYKGSGLGLAIARSTAELHGGSLRIRSEEGIGTLVLVRLPM 748


>gi|197118913|ref|YP_002139340.1| sensor histidine kinase lipoprotein [Geobacter bemidjiensis Bem]
 gi|197088273|gb|ACH39544.1| sensor histidine kinase lipoprotein, CHASE, PAS and PAS
           domain-containing protein [Geobacter bemidjiensis Bem]
          Length = 829

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 125/761 (16%), Positives = 257/761 (33%), Gaps = 84/761 (11%)

Query: 101 ELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVP 160
              +   N +    G R    +  LH    +     + R+        L+P++G    + 
Sbjct: 89  AFTEA--NTSESDFGRRFDVYAAGLHAGAKDVRLFAITREGV---IRYLYPVKGNERAME 143

Query: 161 IDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKE 220
           +DL   P+   +           +          +    L +    +   K   +  E  
Sbjct: 144 LDLFLAPLTRED----------ALRTLNSRGTTLSNPYELRQGGLGVVARKAVFAKGEFW 193

Query: 221 KYDIFSQQSPPPHLRMK-NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP-EQEDFHTI 278
            +       P        ++   L      +   +      +       L     + +  
Sbjct: 194 GFATLVIDIPSVLAEAGLDRQDRLDMTVRDRAGKVFYGDAGIFAKSPVMLHIGLPEGYWE 253

Query: 279 NLNQYTKKQYFGTLQNNSKESFEYLSHR-------------------NHPSLSAYFDEGE 319
                         ++                                    +A   E E
Sbjct: 254 LAAVPKGGWEAPVRRDLLIFRLGTFFTASCLAFIVFQIYDRQRRLRNAVQERTAALKEIE 313

Query: 320 NLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
           N      +  PI   + S  G L   N ++  +      + + ++               
Sbjct: 314 NYNRTLFELSPIGLALCSMDGVLVDVNTAYADILGRTVAETLGLS------YWEITPEKY 367

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
              + + L R +             + +      +      +  +  +         +  
Sbjct: 368 EDQERMRLERLETVGFYGPYEKEYCRRDGR---LVPVRLHGRIIERNKARFIWSSVEDIT 424

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
           D +  + +++ E     +++++    + + ++E   L  N+   ++ GY  E+ILR    
Sbjct: 425 DRKHAEAEIKREHAFSEALIDSLPGVVYLYDQEMNFLRWNKNFERVTGYAPEEILRLQPL 484

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSL 556
            F  +   +++   + E+                 K+           +       C   
Sbjct: 485 DFFVEKDKALLQSRIQEVFVKGAS---NVEAGFVAKDGSSAPYFFTGLRTEIDGKTCLIG 541

Query: 557 TMHDISEWKQEKNKLSH-------------------------AKKIAEKESSHKSDFLAR 591
              DIS+ K+ + +L+                          A +  ++    KS F+A 
Sbjct: 542 IGIDISDRKRLEEELTALNLNLETRVAERTQELNEKSAQLAAANEKLKEVDRLKSMFIAS 601

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           +SHE+RTPL ++IG+S +I N+  GPL  P   E    + R+G  +L ++ND++D+SKIE
Sbjct: 602 MSHELRTPLNSVIGYSSIILNEWLGPL-QPTQKENLAIVLRAGKHLLSLINDVIDVSKIE 660

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI-RTSFANNIPRILADLRSVKQIALN 710
           +G++ +H E   L + V EA   ++     K +    T+      ++LAD R + Q  LN
Sbjct: 661 AGQIEVHNEEFDLFDLVQEAAQQLEPEIRGKGLAFPVTNIH---LQLLADRRRLLQAVLN 717

Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           +LSNA+ +T  G  I ++          + V D+G+G++  + +   +PF ++ +S +  
Sbjct: 718 LLSNAMKYTVEGS-IQLAVNF-DGTWAEISVADSGIGISEQDAKLVFQPFRRLDSSLRGT 775

Query: 771 GEGTGLGLPLAKAMV-DANMGKFYIFSTPAKGTLIEIIFPL 810
             GTGLGL L   +V +   G     S   +G+   I  P+
Sbjct: 776 VSGTGLGLYLTNKLVREVLGGTITFVSAVGQGSTFTIRIPV 816


>gi|148264784|ref|YP_001231490.1| PAS/PAC sensor hybrid histidine kinase [Geobacter uraniireducens
           Rf4]
 gi|146398284|gb|ABQ26917.1| PAS/PAC sensor hybrid histidine kinase [Geobacter uraniireducens
           Rf4]
          Length = 929

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 106/789 (13%), Positives = 237/789 (30%), Gaps = 94/789 (11%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL----------------HIDPNNH 132
            D  G +   +    + +G  A +++G+   D+  +                 ++   + 
Sbjct: 30  TDTLGLITMFNRGSERMLGYTADEVVGVASIDLFHLETEVRGRGEEMSRALGRNVSGFDV 89

Query: 133 IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192
             + +K+      +      +G      + L    I+       G+ G  +         
Sbjct: 90  FVENVKQTGAETREWFYVRKDGD--VFLVKLTITIIHDEQDRVIGYLG--VAEDISDRKA 145

Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP--HLRMKNKVSSLTEYYAHK 250
                         + E        +       +            + K+   T Y    
Sbjct: 146 MEIELIENKNLLGSILESIPNPIFYKNADGVYVNCNKAFSSYLGIPREKIIGSTVYDIAP 205

Query: 251 DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYF---------GTLQNNSKESFE 301
            ++     +  +       P+  +      +   +   F         G+LQ       +
Sbjct: 206 KELADIYHHADMKLMHERDPQVYEAQVRYADGLLRDVLFYKSLIWGNNGSLQGLVGVMLD 265

Query: 302 YLSH------------------RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLF 342
                                   H        E E       +      F+ S  G + 
Sbjct: 266 VTERKRIETELHEQAILLEQEIAEHQCAEETLRESEEQLRVIFETSQASIFLVSPVGRII 325

Query: 343 YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT 402
           +AN     +      +++  +     L  + K+     ++ ++    D      S   H 
Sbjct: 326 FANHRMAEMFGCT-YEELIGSHYQDYLHPSEKMVGGARMRKLI----DGEIDHVSTERHY 380

Query: 403 IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
           ++ +  +                      GI     D +  K  +E E  +L   L +  
Sbjct: 381 VRKDGGDFWG-YLSGRRLEGPDGNLRALVGIITNITDLKKAKDDLEKEKERLGVTLRSIG 439

Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE---QNTPSVMNHYLTEILSL 519
           DG+  ++ +  I+  NR   +L G+  E+   K  +       + + +V+N+ +  +L  
Sbjct: 440 DGVITVDTDERIVMLNRVAEQLCGWSQEESKGKILSEVFHMINEKSRAVVNNPVGRVLKT 499

Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAK 575
            +   L   T+   ++     +      +           L + D++E K+ + +L  A+
Sbjct: 500 GMIMELTNHTILVARDGSERVIADSAAPILDQEGAIIGVVLVLRDMTEKKEIEEELFKAR 559

Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
           K+              ++H+    LT I+G    +      P  +       +   ++  
Sbjct: 560 KLD-----SLGILAGGIAHDFNNLLTGILGNV-SMARMIIPPDHDAYL--LLDRAQKASE 611

Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695
              D+   LL  SK  +    L      ++  +   +           +    +   ++ 
Sbjct: 612 RARDLTQQLLTFSKGGAPVKRL----TGIEHIL---VDSATFALRGSNVRCEFAIPADLW 664

Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTT---------HTSNEEVI-LRVRDTG 745
               D   + Q+  N++ NA    P GG I I            +  +  +I L ++DTG
Sbjct: 665 PAEIDAGQMSQVINNLVINADQAMPDGGVISIQAENIETFSDGDNPDDGRIIQLTIKDTG 724

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+    L++   P+         +  G+GLGL    ++V  + G+  + S    GT   
Sbjct: 725 IGILEEHLQRIFDPYFTT------KHHGSGLGLATVYSIVKNHNGEIRVVSQTGVGTTFI 778

Query: 806 IIFPLYDTS 814
           I  P   T+
Sbjct: 779 IRLPASPTA 787



 Score =  112 bits (280), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 48/427 (11%), Positives = 118/427 (27%), Gaps = 40/427 (9%)

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
           L    +   EI    +                        V   +    H +  ++    
Sbjct: 15  LQAVLNAATEISIIATDTLGLITMFNRGSERMLGYTADEVVGVASIDLFHLETEVRGRGE 74

Query: 260 PLLTSEESSLPEQEDFH----------------TINLNQYTKKQYFGTLQNNSKESFEYL 303
            +  +   ++   + F                   + + +  K     + +       YL
Sbjct: 75  EMSRALGRNVSGFDVFVENVKQTGAETREWFYVRKDGDVFLVKLTITIIHDEQDRVIGYL 134

Query: 304 SHRNHPSLSAYFD----EGENLTPETVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVD 358
                 S     +    E +NL    ++  P P F  +   +    N +F          
Sbjct: 135 GVAEDISDRKAMEIELIENKNLLGSILESIPNPIFYKNADGVYVNCNKAFSSYLGIPREK 194

Query: 359 DIE------IAGGLSTLLDAPK----LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
            I           L+ +            +  +    +  +D            I  N  
Sbjct: 195 IIGSTVYDIAPKELADIYHHADMKLMHERDPQVYEAQVRYADGLLRDVLFYKSLIWGNNG 254

Query: 409 --NSLAMTFIPFEKANQFPENMPQNGI--EPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
               L    +   +  +    + +  I  E E  + +  +  +     QL  I E +   
Sbjct: 255 SLQGLVGVMLDVTERKRIETELHEQAILLEQEIAEHQCAEETLRESEEQLRVIFETSQAS 314

Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
           I +++  G I+  N  ++++FG   E+++   +  +L  +   V    + +++  ++   
Sbjct: 315 IFLVSPVGRIIFANHRMAEMFGCTYEELIGSHYQDYLHPSEKMVGGARMRKLIDGEIDHV 374

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEK 580
                    K+       +  ++L             + +I++ K+ K+ L   K+    
Sbjct: 375 -STERHYVRKDGGDFWGYLSGRRLEGPDGNLRALVGIITNITDLKKAKDDLEKEKERLGV 433

Query: 581 ESSHKSD 587
                 D
Sbjct: 434 TLRSIGD 440



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/362 (9%), Positives = 92/362 (25%), Gaps = 23/362 (6%)

Query: 36  TEKSKKENPCHDSFEQ-SNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGY 94
           TE+ + E   H+          ++Q +       + +   +F+    +    + +   G 
Sbjct: 267 TERKRIETELHEQAILLEQEIAEHQCAEETLRESEEQLRVIFETSQAS---IFLVSPVGR 323

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ--NTWYGKTTLWPI 152
           +   +  + +  G    ++IG    D                L     +    +      
Sbjct: 324 IIFANHRMAEMFGCTYEELIGSHYQDYLHPSEKMVGGARMRKLIDGEIDHVSTERHYVRK 383

Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212
           +G +      L+   +   +       G  I ++  +      L K  ++    L  I  
Sbjct: 384 DGGDF--WGYLSGRRLEGPDGNLRALVGI-ITNITDLKKAKDDLEKEKERLGVTLRSIGD 440

Query: 213 GHSSVEKEKYDIFSQQSPPPHLRMKNK-----VSSLTEYYAHKDDVLK---TEKYPLLTS 264
           G  +V+ ++  +   +          +     + S   +  ++             L T 
Sbjct: 441 GVITVDTDERIVMLNRVAEQLCGWSQEESKGKILSEVFHMINEKSRAVVNNPVGRVLKTG 500

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
               L         + ++         + +        +      +     +E      +
Sbjct: 501 MIMELTNHTILVARDGSERVIADSAAPILDQEGAIIGVVLVLRDMTEKKEIEEELFKARK 560

Query: 325 TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST-LLDAPKLSDNNAIKP 383
                     + + G     N     +    S+  + I       LL       +   + 
Sbjct: 561 L-----DSLGILAGGIAHDFNNLLTGILGNVSMARMIIPPDHDAYLLLDRAQKASERARD 615

Query: 384 VM 385
           + 
Sbjct: 616 LT 617


>gi|329910831|ref|ZP_08275387.1| multi-sensor hybrid histidine kinase [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327546070|gb|EGF31141.1| multi-sensor hybrid histidine kinase [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 1228

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 122/588 (20%), Positives = 229/588 (38%), Gaps = 41/588 (6%)

Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
                    +      L +        +             +    TL+++ +  F  L+
Sbjct: 239 ALALSLGRRIAWSMTALTSPARDLAAGKALAVPRVYFLEAGEVARATLRSSMELRFSELA 298

Query: 305 H-RNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEI 362
               +  L A   E      +  ++ P  +  + + G +   N + L L  Y+  + +  
Sbjct: 299 LKALNHDLEARIQERTREATDLYERGPCGYHTLDATGIVIQVNQTELDLLGYEREEYLGH 358

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
           A         P      A + + L                        ++       + +
Sbjct: 359 AI---RQFMTPDSGATTADRFLQLRHG-GQLQDLEVDFV---HKDGTVVSCLISANVELD 411

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
                        ++   +  ++++      L  +LE+   G+A++N +  ++  NR   
Sbjct: 412 SRGHFAFLRSTLVDNRIGKARQQQIASLNEFLNEVLESLPFGVAVLNGQQQVILRNRLFG 471

Query: 483 KLFGYPVEDILRKPFTV-----------FLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
            L GYP +   + P                 Q +   +      ++       +E+   G
Sbjct: 472 SLQGYPPDLFQKSPLMFAEMVRFSYEQGHYPQRSYDDVLAEYLAMIGSRQSVRIERSLPG 531

Query: 532 STKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
           +        L I  + +       LT  DI+ +++ +  LS A+  AE  +  KSDFLA 
Sbjct: 532 NQ------YLEIRGQPISADW-ILLTYTDITAFRRAEQALSQARTEAETANLAKSDFLAN 584

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           ++HE+RTPL A+IG + ++         N    +YA+ I  S   +  ++ND+LD+SK+E
Sbjct: 585 MTHELRTPLNAVIGLARLLTESPL----NAWQRDYADKIALSAQSLQVLINDILDLSKME 640

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALN 710
           + ++ +   P SL+  +  A S++ +   +K I +    A ++P  ++ D   V+QI LN
Sbjct: 641 ANQLRIEQIPFSLNLLLRTAASVLGVGVGQKAIAVVLDLAPDVPDALVGDPLRVQQILLN 700

Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEEV--------ILRVRDTGVGMTNYELEKAMKPFGQ 762
           ++SNA+ FT  G +I++S    S   V         + VRDTG+G+    LE     F Q
Sbjct: 701 LISNALKFTERG-EIVVSVRCQSMMPVAAGAPILLQIAVRDTGIGIAVAALETIFNAFIQ 759

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
              S      GTGLGL ++  +V    G+  + STP +G+      PL
Sbjct: 760 ADASTSRLYGGTGLGLTISNRLVTMMGGQISVDSTPGQGSEFRFSLPL 807



 Score = 43.9 bits (102), Expect = 0.10,   Method: Composition-based stats.
 Identities = 16/125 (12%), Positives = 39/125 (31%), Gaps = 5/125 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL-HIDPNNHIGDLLKRQNTWYGKT 147
           +DA G + ++++     +G    + +G  +             +    L         + 
Sbjct: 331 LDATGIVIQVNQTELDLLGYEREEYLGHAIRQFMTPDSGATTADRFLQLRHGGQLQDLEV 390

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                +GT   V   ++A         F+  R   +   NR+    +     L++  + +
Sbjct: 391 DFVHKDGT--VVSCLISANVELDSRGHFAFLRSTLV--DNRIGKARQQQIASLNEFLNEV 446

Query: 208 HEIKK 212
            E   
Sbjct: 447 LESLP 451


>gi|309809785|ref|ZP_07703639.1| PAS domain S-box protein [Lactobacillus iners SPIN 2503V10-D]
 gi|308169964|gb|EFO72003.1| PAS domain S-box protein [Lactobacillus iners SPIN 2503V10-D]
          Length = 612

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 85/392 (21%), Positives = 173/392 (44%), Gaps = 29/392 (7%)

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
           ++  E      I    ++        + E  +L ++L   +DG+   +R G I   N   
Sbjct: 232 DEMGELARAFNILSVRIERSQEVS--DSERRRLDNVLMHMTDGVIATDRHGNITIINETA 289

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
                    ++  +P T  L     +     + +++S      +        +       
Sbjct: 290 LNFLDKTENEVKGEPITQLLGLKEVT-----IQDLMSTQQELIVTANVNTHDELILHADF 344

Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
            +I +   F S     +HDI+E ++ +N+              +  F++ VSHE+RTPLT
Sbjct: 345 SLIQRVTGFVSGLICVLHDITEQQKNENE--------------QRQFVSNVSHELRTPLT 390

Query: 602 AIIGFSEVIKNQRFGPLGNPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
           ++  + E + +   G   N     ++   I      ++ ++NDLL++S+++ G + +  E
Sbjct: 391 SLRAYVEALND---GAWKNENIAPQFLGVIQNETERMIRMINDLLNLSRMDRGVVKMDLE 447

Query: 661 PVSLDEAVSEAISLVQLYANEKRIL---IRTSFANNIPRILADLRSVKQIALNILSNAIH 717
            V+L++ +S  ++   +      +    IR  F +    +  D   + Q+  NI++NAI 
Sbjct: 448 WVNLNDFLSHILNRFDMMLKNDGVKKYKIRRIFPHQALWVEIDTDKMMQVIDNIMNNAIK 507

Query: 718 FTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
           ++P GG I I     +++ VIL + D G+G+   +L +    F ++  ++  +  GTGLG
Sbjct: 508 YSPDGGLITIRL-LQTHKHVILSISDQGLGIPRKDLSRIFDRFYRVDKARSRKQGGTGLG 566

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           L ++K +V+A+ GK +  S+   G+   I  P
Sbjct: 567 LAISKEIVEAHHGKIWADSSEGNGSTFYISIP 598


>gi|283852275|ref|ZP_06369547.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283572357|gb|EFC20345.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 1072

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 136/732 (18%), Positives = 243/732 (33%), Gaps = 89/732 (12%)

Query: 122 SDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLY--------------VPIDLAALP 167
           S    + P+  +GDL +    +  +T  W   G + +              VP   A LP
Sbjct: 120 SFNFAVTPDGDVGDLRQVYRNFDPRTRPWYKAGASAHGPAWTPVYRHFALGVPTVTACLP 179

Query: 168 IYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ 227
            Y+ +    G   FG+ +     +D     K       +L E      +      +    
Sbjct: 180 AYAPDGALRGV--FGVDYPLTRIHDFLRTIKVGRSGEVYLLERSGALLAASSAGLETSMV 237

Query: 228 QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287
             P                            + L  +  S LP  E              
Sbjct: 238 AGPDGT-------------------------FALAPAGASGLPMLE---------AAVAH 263

Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH--GNLFYAN 345
             G     +    E L+         Y           +D   +     S   G +    
Sbjct: 264 LAGRPGGLAGIRGEVLAQVQGEGGDLYLLAEPFSDGRGLDWLMVAVAPASDFMGRIDAGA 323

Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA-RLHTIQ 404
              + +              +S  +  P      A   + L R D   +   A     ++
Sbjct: 324 RQTVAVGLLGLAAAAAAGIVVSRRISRPVERLAEAADAISLGRWD---LPVPAPHSRELR 380

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV--MQLCSILEATS 462
              E    MT    +      E       +   ++ R+  R  E+     +L +I +A  
Sbjct: 381 RLAEAFARMTGQLRQALAGLTEQHAVIAGQNRTLEARVAARTAELTHMHRRLRAIFDAIP 440

Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD-- 520
             + +++R+  ++     + +      E +L +P          +    +L    +    
Sbjct: 441 GYVHVVDRDLKVVDAGDKLLRAMNLSREAVLGRPCHEVFRGLDAACDCCHLAGDAAEAGG 500

Query: 521 --LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKK 576
                T E+  L                         +   + D+S  ++ + KL+ AK+
Sbjct: 501 CARPSTPEEEALL----GMPFLAYSAPIVGEDGRVWGHIECLMDVSRLREAERKLAAAKE 556

Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
            AE+ +  KSDFLA++SH+IRTPL +IIG +++    R          +   ++  +   
Sbjct: 557 EAEEANRAKSDFLAKMSHDIRTPLNSIIGLTDITLQSRVPA----DVRDNLAHVLEAARS 612

Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696
           +L++V DLLD S+ E+  + L  E  SL   ++  +      A  K + +R       PR
Sbjct: 613 LLELVGDLLDFSRAEAKGLTLKEEDFSLARLLAVVVRSFTAQARFKGVKLRLRQDRACPR 672

Query: 697 I-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---------------EVILR 740
           +   D   ++QI  N++ NA+ FT  G Q+ +     +                  +   
Sbjct: 673 VVRGDPARLRQILANLVGNALKFTEHG-QVALRVEPAARPAALGPAGPGADGAAVWLRFT 731

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V DTG+G+    L    +PF Q       R  G+GLGL + + MVD   G   + STP +
Sbjct: 732 VADTGLGIAAEALATIFEPFRQASGDIAARFGGSGLGLAICRQMVDLMGGVIEVASTPGE 791

Query: 801 GTLIEIIFPLYD 812
           G++     PL  
Sbjct: 792 GSVFAFTVPLAP 803


>gi|152997384|ref|YP_001342219.1| PAS/PAC sensor hybrid histidine kinase [Marinomonas sp. MWYL1]
 gi|150838308|gb|ABR72284.1| PAS/PAC sensor hybrid histidine kinase [Marinomonas sp. MWYL1]
          Length = 902

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 118/521 (22%), Positives = 198/521 (38%), Gaps = 27/521 (5%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
                     E      ++  P   +     GN    N +FL   +  +++ I+    L 
Sbjct: 167 IVAREEARRRELTLSSLLNNIPDIVWSKDEQGNYLDCNQAFLDFNQLTALE-IKGKSDLD 225

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
                  L    A    +     +T I +  +      +                     
Sbjct: 226 -----LNLDGKGAYYQSVGEVPLQTGITSHEQGWGYPKDGGEPCLFEVYRVPVIEPSINF 280

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
               GI  +  +      ++++      S  + ++ G A+   +G I   N+ +  L G 
Sbjct: 281 RGTLGIARDITERHQLFNQLKL----FKSFADNSAQGFAMATLDGDITYFNKKIRSLLGV 336

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSL--DLRQTLEKITLGSTKEEKLLSLRIII 545
             E            +  P     +L E +          E      + +  + +     
Sbjct: 337 GEEASDVSLAEYNYLEFYPEASQKFLKETVIPYVREHGVWEGELQAKSLDGHIFATYETY 396

Query: 546 KKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
             L   +         M+DI+E K    +L  AK+ AE+ S  KS FLA +SHEIRTPL 
Sbjct: 397 FLLRDENGKATSVGDIMNDITEQKYVSMELEQAKEAAEQASQAKSHFLANMSHEIRTPLN 456

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           AIIG+++ + ++     G  R       I  +G+ +L ++ND+LDI++IESG++ LH + 
Sbjct: 457 AIIGYAQ-LISEDNQLTGVSRTRFL--SIASAGHRLLGLINDILDIARIESGRLVLHEQK 513

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTP 720
           V+L   VS+   L Q  A EK + +      +  R +  D    +QI  N+L NA+ FT 
Sbjct: 514 VNLCREVSQISKLFQGQAQEKGLELIVECDIDERRFVWIDPVKFQQIITNLLGNAVKFTD 573

Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
            G    +         + + + DTG G+    ++    PF Q          GTGLGL L
Sbjct: 574 QGYVKAVVQIVED--RIHISIEDTGPGIEAELMDHLFTPFIQGKAG--EASGGTGLGLSL 629

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLY--DTSHPHDC 819
           +  +V    G   + S+   GT I +  PL   + S   DC
Sbjct: 630 STTLVKLMNGTLSVKSSEGVGTQIIVDLPLSKVEDSESTDC 670



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/311 (13%), Positives = 82/311 (26%), Gaps = 20/311 (6%)

Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY--SHGNLFYANPSFLLLTKYKSV 357
             ++      +    F   +      +       + +    G   YA+  F +   ++  
Sbjct: 19  TAFVLVALQLAFLFRFKLLQRRYSRAILATNAGVWEWFPETGR-LYASSEFFMQLGFEEQ 77

Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
              +        L +      N  K   L   +      S RL       E         
Sbjct: 78  KTPKRLEDWLAFLSSEDQITFNTWKTA-LLEQEAHLAPKSIRLQIQNHLNECFWIEMRGS 136

Query: 418 FEKANQFPENMPQNGIEPED-------VDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470
             + N     +   GI  E            + + +     + L S+L    D +   + 
Sbjct: 137 VTRRNSHYRVLSVAGIFEEIGHLVETETALIVAREEARRRELTLSSLLNNIPDIVWSKDE 196

Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530
           +G  L  N+A          +I  K           +         L   +     +   
Sbjct: 197 QGNYLDCNQAFLDFNQLTALEIKGKSDLDLNLDGKGAYYQSVGEVPLQTGITS--HEQGW 254

Query: 531 GSTKEEK---LLSLRIIIK--KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
           G  K+     L  +  +                 DI+E  Q  N+L   K  A+  +S +
Sbjct: 255 GYPKDGGEPCLFEVYRVPVIEPSINFRGTLGIARDITERHQLFNQLKLFKSFAD--NSAQ 312

Query: 586 SDFLARVSHEI 596
              +A +  +I
Sbjct: 313 GFAMATLDGDI 323



 Score = 41.9 bits (97), Expect = 0.46,   Method: Composition-based stats.
 Identities = 29/252 (11%), Positives = 73/252 (28%), Gaps = 8/252 (3%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL-LKRQNTWY 144
            W+ D  G   + ++         A ++ G    D++          +G++ L+   T +
Sbjct: 191 VWSKDEQGNYLDCNQAFLDFNQLTALEIKGKSDLDLNLDGKGAYYQSVGEVPLQTGITSH 250

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            +   +P +G       ++  +P+   +  F G  G  I       +      K      
Sbjct: 251 EQGWGYPKDG-GEPCLFEVYRVPVIEPSINFRGTLG--IARDITERHQLFNQLKLFKSFA 307

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT----EYYAHKDDVLKTEKYP 260
            +  +     +      Y     +S        + VS       E+Y         E   
Sbjct: 308 DNSAQGFAMATLDGDITYFNKKIRSLLGVGEEASDVSLAEYNYLEFYPEASQKFLKETVI 367

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
               E      +    +++ + +   + +  L++ + ++       N  +   Y      
Sbjct: 368 PYVREHGVWEGELQAKSLDGHIFATYETYFLLRDENGKATSVGDIMNDITEQKYVSMELE 427

Query: 321 LTPETVDKCPIP 332
              E  ++    
Sbjct: 428 QAKEAAEQASQA 439


>gi|17231003|ref|NP_487551.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120]
 gi|17132644|dbj|BAB75210.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120]
          Length = 619

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 94/418 (22%), Positives = 181/418 (43%), Gaps = 30/418 (7%)

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINK--RKMEIEVMQLCSILEATSDGIAIINREGI 473
           I      +  E +       E ++    +   ++  E  +L +++   +DG  +I+    
Sbjct: 207 IDLPLGGELGELILNFNEMAERLERYEEQNIEELTAEKAKLETLVSTIADGAVLIDNNMQ 266

Query: 474 ILSTNRAVSKLFGYP-VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
           ++  N     +FG+   +D++       L       +   L E+ + +      ++TL  
Sbjct: 267 VILVNPTARHIFGWEGADDVVGSNVLHHLPPAVQMEITRPLYEMAAGECDSAEFRLTLNQ 326

Query: 533 TKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
                +  L   +  L   S    ++T+ DI+                 + +  KS F++
Sbjct: 327 PSNRTIRILLTTVLNLQRESIKGIAITVQDITR--------------EVELNEAKSQFIS 372

Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650
            VSHE+RTPL  I  F E + +     L      E+   ++   + +  +VND+LD+SK+
Sbjct: 373 NVSHELRTPLFNIKSFIETLHD-YGEDLSLEERQEFLQTVNHETDRLTRLVNDVLDLSKL 431

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710
           ESG+ +  F+ V L +A+ + +   QL A +K I +    A  +P +L +   + Q+  N
Sbjct: 432 ESGR-SYSFDGVDLAQAIEQTLRTYQLNARDKGIELIQDVAPGLPLVLGNYDLLLQVLAN 490

Query: 711 ILSNAIHFTPSGGQIIIST--------THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
           ++ NA+ FT SGG+I I T        +     +V + V DTG+G+   + +     F +
Sbjct: 491 LVGNALKFTSSGGKIAIRTYVLNTKSNSPNQPAQVRIEVSDTGIGIAQEDQQAIFDRFFR 550

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820
           + N +    EGTGLGL + + +V+ +  +  + S    GT       L++   P   +
Sbjct: 551 VEN-RVHTLEGTGLGLSIVRNIVERHRSRVNLVSEVGVGTTFWFDLILFEDEAPKKMV 607


>gi|190889670|ref|YP_001976212.1| two-component sensor histidine kinase [Rhizobium etli CIAT 652]
 gi|190694949|gb|ACE89034.1| probable two-component sensor histidine kinase protein [Rhizobium
           etli CIAT 652]
          Length = 861

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 138/723 (19%), Positives = 264/723 (36%), Gaps = 41/723 (5%)

Query: 107 GNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAAL 166
           GN   +++G    +       +     G  LK ++    +  +  +         D+   
Sbjct: 149 GNARPELLGQLPAETGAPQDGE-FLAFGLWLKSRSAADLEKAIDRLRDEAQ--SFDMVVE 205

Query: 167 PIYSR----NREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKY 222
            I           SG R F  V      N+ RA    L  +   L        ++     
Sbjct: 206 TIRDEVLEAQGRVSGGRAF--VRFV-ALNNLRAELAELRIERDRLMTSISAFQTMLDAID 262

Query: 223 DIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL--------KTEKYPLLTSEESSLPEQED 274
               Q+ P   L   N+              +           +  +  +     P  + 
Sbjct: 263 MPAWQRDPAGRLTWVNQAYGDAVEARSPQQAINEGREMLTTVARERIRATTTPESPFHDT 322

Query: 275 FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF 334
             T+     T              +   +   +  ++ A  D       ET+D    P  
Sbjct: 323 ISTVVHGNRTFFDVVDVTL-PGGSAGMAVDVSDIEAVRAELDRTLKSHAETLDHLATPVA 381

Query: 335 VYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393
           ++     L + N +F+ L +   +  +E     S LL+  + +     +           
Sbjct: 382 IFDGERRLQFYNQAFVALWEL-DIAFLEGRPDNSELLERLRAAKKLPDQLNWKSWK---- 436

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
               A L   +     S  +  +P  +  +        G      +    +  +E     
Sbjct: 437 ---EAALSVYRALDTQS-DLWHLPNGQTLRVFATAHPQGGATWVFENLTEQVDLETRYNT 492

Query: 454 LCSI----LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
           L  +    ++  S+G+A+   +G I  +N A   L+G    +         L +      
Sbjct: 493 LVKVQGETIDHLSEGVAVFGPDGRIRLSNPAFRALWGITEAEAKPGTHIRALGEACAPSY 552

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLS---LRIIIKKLPFSSCYSLTMHDISEWKQ 566
           +         +L  + +          +L S   L   +  LP +    LT  ++++  +
Sbjct: 553 DRPDGWKTFAELITSFDDERRSGQGTLELFSGLVLDYAVIPLPNAQ-TMLTFVNMTDSVR 611

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
            +  L+   +   K    K+DF+  VS+E+R+PLT IIGF+++++ Q  GPL N R  EY
Sbjct: 612 AERALTEKNEALRKADELKNDFVQHVSYELRSPLTNIIGFTDLLRTQGVGPL-NERQAEY 670

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
            ++I  S +++L +VND+LD++ +++G M L++  + L++ + +    +     E  +++
Sbjct: 671 IDHISTSSSVLLTLVNDILDLATVDAGIMRLNYAEIDLNDLLDDVSMQIADRLQESGVVL 730

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
             +    +  I+AD + +KQI L +LSNA +F+P G  I +       + V   VRD G 
Sbjct: 731 EITAPAYLGSIVADPQRLKQILLKLLSNAANFSPEGSSISLECRREGTDFV-FSVRDRGP 789

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G++   +      F     S +    G GLGL +  + V  + G   I S P KGT +  
Sbjct: 790 GISPDMIATVFDRFATGAKSGKR--GGAGLGLSIVDSFVSLHHGDVTIDSEPGKGTTVVC 847

Query: 807 IFP 809
             P
Sbjct: 848 RIP 850



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/375 (10%), Positives = 89/375 (23%), Gaps = 16/375 (4%)

Query: 87  WNIDAHGYLKEISEELPKTI-GNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
           W  D  G L  +++     +      + I      ++ +                 + + 
Sbjct: 266 WQRDPAGRLTWVNQAYGDAVEARSPQQAINEGREMLTTV-----ARERIRATTTPESPFH 320

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVH-VNRVDNDPRALGKRLDKKF 204
            T    + G   +  +    LP                V           A         
Sbjct: 321 DTISTVVHGNRTFFDVVDVTLP-GGSAGMAVDVSDIEAVRAELDRTLKSHAETLDHLATP 379

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM--KNKVSSLTEYYAHKDDVLKTEKYPLL 262
             + + ++      +    ++         R      +  L       D +         
Sbjct: 380 VAIFDGERRLQFYNQAFVALWELDIAFLEGRPDNSELLERLRAAKKLPDQLNWKSWKEAA 439

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
            S   +L  Q D   +   Q  +       Q     ++ + +      L   ++    + 
Sbjct: 440 LSVYRALDTQSDLWHLPNGQTLRVFATAHPQG--GATWVFENLTEQVDLETRYNTLVKVQ 497

Query: 323 PETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
            ET+D       V+   G +  +NP+F  L      +     G     L        +  
Sbjct: 498 GETIDHLSEGVAVFGPDGRIRLSNPAFRALWGITEAEA--KPGTHIRALGEACAPSYDRP 555

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
                +    T      R         + L + +      N        N  +    +  
Sbjct: 556 DGWKTFAELITSFDDERRSGQGTLELFSGLVLDYAVIPLPNAQTMLTFVNMTDSVRAERA 615

Query: 442 INKR-KMEIEVMQLC 455
           + ++ +   +  +L 
Sbjct: 616 LTEKNEALRKADELK 630


>gi|307822681|ref|ZP_07652912.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
           SV96]
 gi|307736285|gb|EFO07131.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
           SV96]
          Length = 872

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 100/640 (15%), Positives = 215/640 (33%), Gaps = 37/640 (5%)

Query: 183 IVHVNRVDNDPR--ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV 240
           I   NR   +        +   +F  + + +     V      +    S    L+   K 
Sbjct: 118 IARRNRTQAERNLYVSLAKSSTEFIGMCDTQLEPFFVNDAGLQLVGLDSLEQALKTPVKD 177

Query: 241 SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF 300
               E  A   D           +E          H               L++      
Sbjct: 178 FFFPEDQAFIMDEFFPTVLRDSRAEIEIR----FRHFKTGEVLWMIFNVFALKDLHDNIV 233

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV--YSHG---NLFYANPSFLLLTKYK 355
            + +   + +     +E    +   ++       +  +      N+   +     +    
Sbjct: 234 GFGTVSTNITEHKQIEEALRESQRDLNHAQAVAHIGNWRMDIRNNILEWSDENFRIFGTP 293

Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
               +     L  +      +D   +                 RL       +    +  
Sbjct: 294 KGTPLTYQSFLDIVH----PADRQLVDTTWQQALTGMPYDIEHRL----IVDKKVKWVRE 345

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
           +   + ++    +   G   +  D +  +  ++ E   L  I++A    I + +REG  +
Sbjct: 346 LAELEFDKHGVLLGGFGTTEDITDIKSTQEALQYERAFLRQIIDAVPSMIFVKDREGRFM 405

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTP-SVMNHYLTEILSLDLRQTLEKITLGSTK 534
            +N A+++ +G   E +       F       +       +++     + + +  +    
Sbjct: 406 LSNEALAQCYGTSPESLTGLTDENFNPNADEVTHFYQNDLDVIRTGKPKLIPEEKVT-HA 464

Query: 535 EEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
           +  +     +   L  +            DI+E K  +  L             K +FLA
Sbjct: 465 DGSVHWYSTVKIPLCDTDNSCSKLLGVATDITERKHAEETLRLM-------DRRKDEFLA 517

Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650
            ++HE+R PL  I     ++K Q      +P+     N IDR    +  +++DLLD+++I
Sbjct: 518 MLAHELRNPLAPIRNAVRLLKMQE---ATDPKLTLSCNIIDRQVTHMTRLLDDLLDMARI 574

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710
             GK+ L  E   L + V+ AI   +     ++  +  S       +  D   + Q+  N
Sbjct: 575 MQGKIRLKIEHFELTDIVNNAIETSRPLLESRKQELIISQTMTPQWLEGDHVRLAQVLSN 634

Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           +L+NA  +T  GG+I++S       + ++ ++DTG+G++   L +    F Q  ++    
Sbjct: 635 LLNNAAKYTGEGGKIMLSV-MRKGSDAVIEIKDTGIGISPDILPQIFDLFTQADHTLAHS 693

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFP 809
             G G+GL L + +V+ + G     S    +G+   +  P
Sbjct: 694 QGGLGIGLTLVRQLVEIHGGTVTAASEGIGQGSTFTVRLP 733



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/212 (15%), Positives = 69/212 (32%), Gaps = 21/212 (9%)

Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR-KMEIEVMQLCSI 457
            +  I          T +     +Q    +       E +   I +R + + E     S+
Sbjct: 75  EMLRIATLVGIGTVCTLVIARLHDQEKRALHTVMDREEQLKKEIARRNRTQAERNLYVSL 134

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPV-EDILRKPFTVFLEQNTPSVMNHYLTEI 516
            +++++ I + + +      N A  +L G    E  L+ P   F      + +       
Sbjct: 135 AKSSTEFIGMCDTQLEPFFVNDAGLQLVGLDSLEQALKTPVKDFFFPEDQAFIMDEFFPT 194

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLS 572
           +  D R  +E       K  ++L +   +  L         +     +I+E KQ +  L 
Sbjct: 195 VLRDSRAEIEIRFRHF-KTGEVLWMIFNVFALKDLHDNIVGFGTVSTNITEHKQIEEALR 253

Query: 573 HAKKIAEKESSHKSDFLARVSH------EIRT 598
            +++      +        V+H      +IR 
Sbjct: 254 ESQRDLNHAQA--------VAHIGNWRMDIRN 277



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/280 (9%), Positives = 71/280 (25%), Gaps = 13/280 (4%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIG-MRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
           W +D    + E S+E  +  G      +      D+         +           +  
Sbjct: 271 WRMDIRNNILEWSDENFRIFGTPKGTPLTYQSFLDIVHPADRQLVDTTWQQALTGMPY-D 329

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
                 ++       +   A   + ++    G  GFG           +   +       
Sbjct: 330 IEHRLIVD--KKVKWVRELAELEFDKHGVLLG--GFGTTEDITDIKSTQEALQYERAFLR 385

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPH--LRMKNKVSSLTEYYAHKDDVLKTE----KY 259
            + +       V+  +                    ++ LT+   + +    T       
Sbjct: 386 QIIDAVPSMIFVKDREGRFMLSNEALAQCYGTSPESLTGLTDENFNPNADEVTHFYQNDL 445

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
            ++ + +  L  +E     + + +        L +      + L      +   + +E  
Sbjct: 446 DVIRTGKPKLIPEEKVTHADGSVHWYSTVKIPLCDTDNSCSKLLGVATDITERKHAEETL 505

Query: 320 NLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDD 359
            L     D+  +    +   N      + + L K +   D
Sbjct: 506 RLMDRRKDEF-LAMLAHELRNPLAPIRNAVRLLKMQEATD 544


>gi|258591885|emb|CBE68188.1| putative Sensor protein yycG [NC10 bacterium 'Dutch sediment']
          Length = 610

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 116/627 (18%), Positives = 234/627 (37%), Gaps = 67/627 (10%)

Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255
           L +    +     + +    S E     +          +++  V  LT+  A +  V++
Sbjct: 35  LERTPIDRLKASLQAQAQLMSNEVHSALLSRDAK-----QLQRLVQRLTQQVATRVTVIE 89

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
                L  SE +          +  N   + +    + +                L    
Sbjct: 90  AGGRVLADSERTLEQV-----ALMDNHLRRPEVQAAISDGVGSVLRRSDTLGVKMLYLAI 144

Query: 316 DEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
              +N     V +  +P                        +  +  A  L  L      
Sbjct: 145 PLRQNGVIAGVLRVAMPLSDLRDDLTL-----LRRTLIIGGLIALAAAVILGFLFARQVT 199

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
           S    +  V    +D                         I    +++  +      +  
Sbjct: 200 SPIAEMTAVARRMADGDFS-------------------RKISAVSSDEIGQLGNALNLMA 240

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
           + ++ R+    +E E  +  +IL++  +G+  ++    IL  N +  +LF         +
Sbjct: 241 KRLEDRLA--ALEEERTKGAAILDSMVEGVLAVDGMNRILFINASACRLFNISSVVAEGR 298

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF-SSCY 554
           PF   +       M   L + L   +     +     T  +++L +     K    S+  
Sbjct: 299 PFLEVIR---NKEMLDLLNQTLREGVFAP--RELHIFTPVQRVLQVHASPLKGSERSAGA 353

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
              MHD++E ++ +              + +++F+A VSHE+RTPLT++ G+ E +    
Sbjct: 354 LWVMHDVTELRRLE--------------AARTEFVANVSHELRTPLTSVRGYLETLLEGA 399

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                      +   I +    +  +++DLLD+S +E GK+ LH +P  L E V   +++
Sbjct: 400 L--EDREHARPFLEVIHKHTERLGRLLDDLLDLSNLELGKVTLHRQPTVLAEVVHNVMAI 457

Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
               A +++I +RT   +++PR++AD   + Q+ +N+L N   FT  GG + +S +    
Sbjct: 458 YGPQATKQKIELRTELPDDLPRVMADRDRIAQVLINLLDNGFKFTQKGGAVRVSASLAHP 517

Query: 735 ---------EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
                    + V + V+DTG+G+ + +L +  + F ++  ++     GTGLGL + K +V
Sbjct: 518 TPDTLHPIVDFVEVAVQDTGIGIPSQDLPRITERFYRVDRARSREMGGTGLGLAIVKHLV 577

Query: 786 DANMGKFYIFSTPAKGTLIEIIFPLYD 812
            A+ G+  I S   KGT +    P+  
Sbjct: 578 KAHGGELLIESELNKGTTVRFTLPIAP 604


>gi|16331424|ref|NP_442152.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
 gi|1001594|dbj|BAA10222.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
          Length = 1178

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 115/638 (18%), Positives = 221/638 (34%), Gaps = 35/638 (5%)

Query: 191  NDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK 250
                A  + L +       +      V +  Y             + + +  L       
Sbjct: 547  TTQEAKYRALVRDAGDAIILITIDFIVLEVNYRAVELSGYDQEELIGHSLLDLRLLTPE- 605

Query: 251  DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL--QNNSKESFEYLSHRNH 308
                +   +  L  E+ S          +    +       +  +N+S            
Sbjct: 606  FYAQQRHFWRTLKREQISQLTDVRLVKKSGELISVDISASVITYENHSIVQCIVHDITLQ 665

Query: 309  PSLSAYFDEGENLTPETVDKCPIPFFV------YSHGNLFYANPSFLLLTKYKSVDDIEI 362
             ++ A          + ++K     FV      +        NP    +T Y S ++I  
Sbjct: 666  KTIQAQLQRENYFRRQLLEKMVEGLFVCYEVEQFPFLQFTVWNPMMKNITGY-SQEEINQ 724

Query: 363  AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
             G   TL    +  +   ++   +                I+ +              +N
Sbjct: 725  CGWYETLYSHGQPQEAVRVRMKAVAL---GVDMVKEEWQIIRRDGALRTVEISTALITSN 781

Query: 423  QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD--GIAIINREGIILSTNRA 480
                      +  +  D +   + ++     L  I+E      G+  IN        N +
Sbjct: 782  ---NQTNILAVIQDITDQKRQLQIIQNNEATLRCIVENLPIFFGMRTINFS-NWYYINPS 837

Query: 481  VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK-EEKLL 539
               L GY  +++   P           +      E L        E       K +   +
Sbjct: 838  FESLTGYTPDEMYEDPLLW------QKIHREEYAENLEQARPNLGEWTIFSMEKKDGTQI 891

Query: 540  S---LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
                +  ++  L  ++   +   DI++ K+ + +   +     + +  KS F+  VSHE 
Sbjct: 892  WAQTVEFLVDDLSDTARVVVFGQDITDIKRAEIETLRSLVKERELNEAKSQFVDIVSHEF 951

Query: 597  RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
            RTPLT+IIGF E + ++ F  L   +  +Y N I  S   +  +++D+L IS+ ++ K+ 
Sbjct: 952  RTPLTSIIGFGE-LLSKYFDRLSTEKKQQYINNIQNSSQRLKQLIDDVLSISRYDANKIE 1010

Query: 657  LHFEPVSLDEAVSEAISLVQ-LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715
            +    ++L    ++ I        +E    +      +   ++ D+R ++ I  NILSNA
Sbjct: 1011 IELGNINLRNLANDLIENFSCGLGSEHNFELNYHLKPDEHSLV-DVRLLRHILENILSNA 1069

Query: 716  IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
            I ++  G  I +  +    E ++ +VRD G+G+   + EK  + F +   S      GTG
Sbjct: 1070 IKYSAPGSTITLDIS-KDEEHLLFQVRDEGIGIPLQDQEKLFEAFHRA--SNVGDIPGTG 1126

Query: 776  LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
            LGL + K  V+   G   + S P KGT + I  PL   
Sbjct: 1127 LGLSIVKRYVEFQGGTIEVISMPGKGTTMVIKLPLNPA 1164



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 58/535 (10%), Positives = 154/535 (28%), Gaps = 75/535 (14%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD--LLKRQNTW 143
            +  D  G    I   +    G    ++       +  +  +  +    +  L ++    
Sbjct: 172 VFVTDLSGKFTFICSNIDNIFGYSLAEV-----NAMGTVETLLGDFRFNEYELKEKGELK 226

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +  +   +G   Y+ I+L  + I       +G                    +  +  
Sbjct: 227 NLRHDVQDKQGKIHYLLINLKKVAI-------NGGIYLYSCRDISEWARKEQAIRNSEAN 279

Query: 204 FSHL-HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
           F  +   IK G   ++++ Y  ++       L                ++++ T   PL 
Sbjct: 280 FRDIFASIKDGLLVLDEDNYICYANAQAVKLLNCT------------LEELVGTIGSPLE 327

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
            +E S L +    +T++++      Y  T +             +   +     E +N  
Sbjct: 328 DTEFSLLVDDGTIYTVDVSVTEITWYGQTAK-----LVSLRDISDRKRMENQLRENQNKY 382

Query: 323 PETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
              ++       V++    + YANP          ++  +I        D          
Sbjct: 383 YRLLENLDNGVIVHNANAEIVYANPKAESFLGLTDLEGRDIDDEYWMFFDKEGEKLEKEE 442

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
            PV    ++++ +  +  +   + + +  L      + +               +  + +
Sbjct: 443 FPVAQVLANQSSLK-NFEMGIYRPDTDQLLWAYINAYPEFYNEDTIQEIIVTFSDITERK 501

Query: 442 INKRKMEI---------------------------------------EVMQLCSILEATS 462
           + + +++                                        +  +  +++    
Sbjct: 502 LAEIQLKTINENLEVLIEERTSELESSNSQLLQEIIEKEQVSITLTTQEAKYRALVRDAG 561

Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF--TVFLEQNTPSVMNHYLTEILSLD 520
           D I +I  + I+L  N    +L GY  E+++         L     +   H+   +    
Sbjct: 562 DAIILITIDFIVLEVNYRAVELSGYDQEELIGHSLLDLRLLTPEFYAQQRHFWRTLKREQ 621

Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575
           + Q  +   +  + E   + +   +      S     +HDI+  K  + +L    
Sbjct: 622 ISQLTDVRLVKKSGELISVDISASVITYENHSIVQCIVHDITLQKTIQAQLQREN 676



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/297 (11%), Positives = 73/297 (24%), Gaps = 44/297 (14%)

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEI 362
                          E    +          V    N + YAN   + L      + +  
Sbjct: 262 DISEWARKEQAIRNSEANFRDIFASIKDGLLVLDEDNYICYANAQAVKLLNCTLEELVGT 321

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
            G                     L   D T       +  I W  + +  ++        
Sbjct: 322 IGS------------PLEDTEFSLLVDDGTIYTVDVSVTEITWYGQTAKLVSLR------ 363

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
                        +  D +  + ++     +   +LE   +G+ + N    I+  N    
Sbjct: 364 -------------DISDRKRMENQLRENQNKYYRLLENLDNGVIVHNANAEIVYANPKAE 410

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHY------LTEILSLDLRQTLEKITLGSTKEE 536
              G    D+  +                       + ++L+        ++ +     +
Sbjct: 411 SFLGLT--DLEGRDIDDEYWMFFDKEGEKLEKEEFPVAQVLANQSSLKNFEMGIYRPDTD 468

Query: 537 KLLSLRIIIKK----LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
           +LL   I                +T  DI+E K  + +L    +  E     ++  L
Sbjct: 469 QLLWAYINAYPEFYNEDTIQEIIVTFSDITERKLAEIQLKTINENLEVLIEERTSEL 525



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 26/270 (9%), Positives = 75/270 (27%), Gaps = 41/270 (15%)

Query: 317 EGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
             E L+   +       FV    G   +   +   +  Y S+ ++   G + TLL   + 
Sbjct: 156 HSEQLSEIILANISDTVFVTDLSGKFTFICSNIDNIFGY-SLAEVNAMGTVETLLGDFRF 214

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
           ++          +           +   Q        +                      
Sbjct: 215 NEYE-------LKEKGELKNLRHDVQDKQ---GKIHYLLIN---LKKVAINGGIYLYSCR 261

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
           +  +    ++ +         I  +  DG+ +++ +  I   N    KL    +E+++  
Sbjct: 262 DISEWARKEQAIRNSEANFRDIFASIKDGLLVLDEDNYICYANAQAVKLLNCTLEELVG- 320

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP--FSSC 553
                                         +        +  + ++ + + ++     + 
Sbjct: 321 -----------------------TIGSPLEDTEFSLLVDDGTIYTVDVSVTEITWYGQTA 357

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
             +++ DIS+ K+ +N+L   +    +   
Sbjct: 358 KLVSLRDISDRKRMENQLRENQNKYYRLLE 387



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 54/396 (13%), Positives = 115/396 (29%), Gaps = 33/396 (8%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCD--VSDILHIDPNNHIGDLLKRQNTWYGKTTLWPI 152
           + E++    +  G    ++IG  L D  +          H    LKR+      T +  +
Sbjct: 573 VLEVNYRAVELSGYDQEELIGHSLLDLRLLTPEFYAQQRHFWRTLKREQI-SQLTDVRLV 631

Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR----LDKKFSHLH 208
           + +   + +D++A  I   N          IVH   +    +A  +R      +    + 
Sbjct: 632 KKSGELISVDISASVITYENHSIV----QCIVHDITLQKTIQAQLQRENYFRRQLLEKMV 687

Query: 209 EIKKGHSSVEKEKYDIFSQQSP-------PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
           E       VE+  +  F+  +P            +       T Y   +       +   
Sbjct: 688 EGLFVCYEVEQFPFLQFTVWNPMMKNITGYSQEEINQCGWYETLYSHGQPQEAVRVRMKA 747

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTL--QNNSKESFEYLSHRNHPSLSAYFDEGE 319
           +      + E+      +    T +     +   N +          +           E
Sbjct: 748 VALGVDMVKEEWQIIRRDGALRTVEISTALITSNNQTNILAVIQDITDQKRQLQIIQNNE 807

Query: 320 NLTPETVDKCPI--PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
                 V+  PI       +  N +Y NPSF  LT Y   +  E       LL      +
Sbjct: 808 ATLRCIVENLPIFFGMRTINFSNWYYINPSFESLTGYTPDEMYE-----DPLLWQKIHRE 862

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
             A        +          + +++      +    + F   +   +         + 
Sbjct: 863 EYAENLEQARPNLG-----EWTIFSMEKKDGTQIWAQTVEFLVDD-LSDTARVVVFGQDI 916

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
            D +  + +    +++   + EA S  + I++ E  
Sbjct: 917 TDIKRAEIETLRSLVKERELNEAKSQFVDIVSHEFR 952


>gi|283770756|ref|ZP_06343648.1| two-component system OmpR family phosphate regulon sensor histidine
           kinase PhoR [Staphylococcus aureus subsp. aureus H19]
 gi|283460903|gb|EFC07993.1| two-component system OmpR family phosphate regulon sensor histidine
           kinase PhoR [Staphylococcus aureus subsp. aureus H19]
          Length = 554

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 86/398 (21%), Positives = 169/398 (42%), Gaps = 33/398 (8%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEI--EVMQLCSILEATSDGIAIINREGIIL 475
                          +   D+  R+ K   E   +  +L + +E     I +I+R G I+
Sbjct: 178 IRVPESNVVETKALFVSTNDLARRLQKLNNEQKIQSNRLKTTIENIPSAILMIDRNGKIV 237

Query: 476 STNRAVSKLFGYPVEDILRKPFTVF-LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
             N+A  + F                      + +   + E   ++     +     +  
Sbjct: 238 VANKAYYEQFNIS------HNIEQVGYHGYVNTEIEQLILESFKVEKPIYEQLEVAINQV 291

Query: 535 EEKLLSLRIIIKKLPFS---SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
             K   +  +              + MHDI+  KQ +              + + +F+A 
Sbjct: 292 HAKYFDISCVPILTRSQKSLQGILVVMHDITNLKQLE--------------NLRREFVAN 337

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKI 650
           VSHE++TP+T+I GF+E + +   G   +P+ ++ + N I +  N +  +V DLLD+S I
Sbjct: 338 VSHELKTPITSIKGFAETLID---GAKNDPQSLDMFLNIILKESNRIESLVTDLLDLSHI 394

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710
           E     L  + ++L +     I  +   AN+K I I T    ++  + A    + Q+  N
Sbjct: 395 E-QHTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTDIEKDVI-VKAQESKIAQVITN 452

Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           +L+NAI+++   G I +   +  +  VI  V+D G+G+   + ++  + F ++  ++   
Sbjct: 453 LLTNAINYSYEDGDINVRV-YRDDFRVIFEVQDFGIGIKLEDQQRIFERFYRVDKARSRD 511

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
             GTGLGL + K +V+A+ G   + S   +G+  ++I 
Sbjct: 512 SGGTGLGLSITKHIVEAHQGNIEVNSQVGEGSTFKVIL 549


>gi|282916952|ref|ZP_06324710.1| two-component system, OmpR family, phosphate regulon sensor
           histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus D139]
 gi|282319439|gb|EFB49791.1| two-component system, OmpR family, phosphate regulon sensor
           histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus D139]
          Length = 554

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 86/398 (21%), Positives = 169/398 (42%), Gaps = 33/398 (8%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEI--EVMQLCSILEATSDGIAIINREGIIL 475
                          +   D+  R+ K   E   +  +L + +E     I +I+R G I+
Sbjct: 178 IRVPESNVVETKALFVSTNDLARRLQKLNNEQKIQSNRLKTTIENIPSAILMIDRNGKIV 237

Query: 476 STNRAVSKLFGYPVEDILRKPFTVF-LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
             N+A  + F                      + +   + E   ++     +     +  
Sbjct: 238 VANKAYYEQFNIS------HNIEQVGYHGYVNTEIEQLILESFKVEKPIYEQLEVAINQV 291

Query: 535 EEKLLSLRIIIKKLPFS---SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
             K   +  +              + MHDI+  KQ +              + + +F+A 
Sbjct: 292 HAKYFDISCVPILTRSQKSLQGILVVMHDITNLKQLE--------------NLRREFVAN 337

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKI 650
           VSHE++TP+T+I GF+E + +   G   +P+ ++ + N I +  N +  +V DLLD+S I
Sbjct: 338 VSHELKTPITSIKGFAETLID---GAKNDPQSLDMFLNIILKESNRIESLVTDLLDLSHI 394

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710
           E     L  + ++L +     I  +   AN+K I I T    ++  + A    + Q+  N
Sbjct: 395 E-QHTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTDIEKDVI-VKAQESKIAQVITN 452

Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           +L+NAI+++   G I +   +  +  VI  V+D G+G+   + ++  + F ++  ++   
Sbjct: 453 LLTNAINYSYEDGDINVRV-YRDDFRVIFEVQDFGIGIKLEDQQRIFERFYRVDKARSRD 511

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
             GTGLGL + K +V+A+ G   + S   +G+  ++I 
Sbjct: 512 SGGTGLGLSITKHIVEAHQGNIEVNSQVGEGSTFKVIL 549


>gi|86147779|ref|ZP_01066086.1| probable composite two component regulatory (sensor histidine kinase
            and response regulator hybrid) transcription regulator
            [Vibrio sp. MED222]
 gi|85834417|gb|EAQ52568.1| probable composite two component regulatory (sensor histidine kinase
            and response regulator hybrid) transcription regulator
            [Vibrio sp. MED222]
          Length = 1430

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 105/526 (19%), Positives = 195/526 (37%), Gaps = 48/526 (9%)

Query: 307  NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGG 365
            +     +            +D  P P  V +    +   N +   LT ++ ++   +   
Sbjct: 537  DRKRTESALKHQVEFERSLLDAMPFPIVVRNLDNQIISLNSAAQQLTGFELIEGTIVNNS 596

Query: 366  LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
                +    +      K V                  +        A    P+       
Sbjct: 597  DEDTMIHHGVVLPRLEKEV------------------VSPQGSKHYAYWKCPYISNGNIE 638

Query: 426  ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA--------IINREGIILST 477
             ++       E  + +   +  +  V +L          +         + + E   +  
Sbjct: 639  GSVTILDDLTELYEAKKIAKSADDRVQKLA---NNLHGAVIQHIQPKRSLHDIE--FVFI 693

Query: 478  NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEE 536
            +  V +L G     + R P + F            + ++ S +    L     +    + 
Sbjct: 694  SNGVEELLGLTPAQLRRSPIS-FFAPLNAQDRRTLIKKVRSGNKEGKLSLDIGVNIDNQN 752

Query: 537  KLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
            + L+L+  I  L     +   + DI+E KQ++ +L+ A++ A   +  KS FLA +SHEI
Sbjct: 753  RWLNLQSKISDLGDYYEWDSVLTDITELKQQQEELTQARQSAIAATEAKSRFLANMSHEI 812

Query: 597  RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
            RTPL  I+   E+ +    G        +    + +S N +L IVND+LD SKIE+GK+ 
Sbjct: 813  RTPLGGIVSLLELSEQYEVGY----EVQKIHTTLSQSANNLLHIVNDILDFSKIEAGKLT 868

Query: 657  LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNA 715
            L ++P SLD        L    A+ K +  +      +   +L D   + Q+  N+LSNA
Sbjct: 869  LDYQPASLDTLTLRVTQLQARQAHAKGLQFKFWLDPELNDLVLMDDIRIGQVLNNLLSNA 928

Query: 716  IHFTPSGGQIIISTTHT------SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
            I FT  G    +             +++   V D+G+G++   +    +PF Q       
Sbjct: 929  IKFTEYG---TVGLAAKLLDLDGEQQQICFEVFDSGIGISEEHIRNLFQPFVQADEGTTR 985

Query: 770  RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            +  G+GLGL ++K +++   G   + S    G+   I  PL   + 
Sbjct: 986  KYGGSGLGLTISKQLIEQMGGSLNVTSKINIGSTFSITLPLKTLAE 1031



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/135 (14%), Positives = 47/135 (34%), Gaps = 12/135 (8%)

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
           +  E  D +  +  ++ +V    S+L+A    I + N +  I+S N A  +L G+   ++
Sbjct: 531 LRREVEDRKRTESALKHQVEFERSLLDAMPFPIVVRNLDNQIISLNSAAQQLTGF---EL 587

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
           +        +++T       L  +         EK  +     +     +          
Sbjct: 588 IEGTIVNNSDEDTMIHHGVVLPRL---------EKEVVSPQGSKHYAYWKCPYISNGNIE 638

Query: 553 CYSLTMHDISEWKQE 567
                + D++E  + 
Sbjct: 639 GSVTILDDLTELYEA 653


>gi|108758532|ref|YP_628880.1| sensory box histidine kinase [Myxococcus xanthus DK 1622]
 gi|108462412|gb|ABF87597.1| sensory box histidine kinase [Myxococcus xanthus DK 1622]
          Length = 723

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 101/747 (13%), Positives = 215/747 (28%), Gaps = 101/747 (13%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + +DA G L  +     +  G       G  L +       +    +            
Sbjct: 60  VFQLDAQGRLAVLGGAWERLTGTPVSAWRGRALLEAIHPEDRERAQALL-AYTPGIPVSR 118

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +       G +    ++L+A  + +   E  G      +                ++   
Sbjct: 119 QEVRVDTGGGHGVRWVELSARALATVPGEVMG-----TLLDVTSRRTAEEAVTTRERYLD 173

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
            + ++++     +       +   P  H+   ++V     ++A    +L +++       
Sbjct: 174 AMVQVQRRMMGHDLPDDLYGAVVEPLGHVSAASRVYVFEMHFAEDGTLLASQRAEWCAPG 233

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
                E  + H +  +   +      LQ                              E 
Sbjct: 234 IPPNLEDPNMHGLPFDAALRPHQSEQLQR-----------------GEPVQGQPRDFSEL 276

Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
           +                                 +E  G  S LL    +          
Sbjct: 277 L------------------------------APMLEAQGVRSVLLLPMHVHGQLFGVIGF 306

Query: 386 LYRSDRTCI-AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
               +          L +                                  +      +
Sbjct: 307 DNCREPESWGPIEVNLLS-------------------GAAGALSLALEQRTANALRMRTE 347

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRKPFTVFLEQ 503
             +      +  ++EA  D + +   +G++LS N A+ +  G+    +++ +     +  
Sbjct: 348 TTLRRTEAGVHLLIEAFPDPVLVHVGDGVLLSVNPALVQYLGFRDASELVGRHMLDLVRP 407

Query: 504 NTPSVMNHYLTEILSLD-LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
                   +L++ L      + +E   + S  E  +  L  +   L  S        D +
Sbjct: 408 EDRGAAQLHLSQALEGKSAARVVEMPLVRSDGEVVVADLVTLAVVLDGSPARITVARDFT 467

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN-------QRF 615
           E K+ + +L    ++A           A ++HE+  PL  ++   + + +       +  
Sbjct: 468 ERKRTQAQLMLTDRMA-----SMGLLAAGIAHELNNPLAYVLSNLDFLHSAVGGVRPRML 522

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
            P       +  +        +  IV  L   S++E GK     E V +   +      +
Sbjct: 523 SPEDMVELRQVLDDAREGAERMRQIVRQLRVFSRVEDGK----EESVDVHAVLESVTQ-M 577

Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG----QIIISTTH 731
                  R  +   +   +P +  +   + Q+ LN+L NA H    G     +I ++T  
Sbjct: 578 AASVVRARARLVKDY-GEVPFVRGNEGKLFQVFLNLLINAAHAIEEGDSEANEIRLTTRT 636

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
                V++ V DTG G+    L +   PF    +S    G GTGLGL +   +V A  G 
Sbjct: 637 EVGGRVMVVVSDTGQGIPPEHLRRIFDPFFTTKSS----GLGTGLGLSICDTIVTALGGH 692

Query: 792 FYIFSTPAKGTLIEIIFPLYDTSHPHD 818
             + S+   GT   +         P +
Sbjct: 693 ISVESSIGAGTTFRVALSAAPPKAPAN 719



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 13/184 (7%), Positives = 57/184 (30%), Gaps = 6/184 (3%)

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
             +                     + ++ +    ++E  +   + E   + +  ++ +G 
Sbjct: 9   AVMDAPGKASGTAPADMACDLLPPMKSQASHAGSQVESERFRHLSELLHEVVFQLDAQGR 68

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
           +     A  +L G PV     +     +           L    +  +  + +++ + + 
Sbjct: 69  LAVLGGAWERLTGTPVSAWRGRALLEAIHPEDRERAQALL--AYTPGIPVSRQEVRVDTG 126

Query: 534 KEEKLLSLRIIIKKLPFSSC-YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
               +  + +  + L         T+ D++  +  +  ++  ++  +     +      +
Sbjct: 127 GGHGVRWVELSARALATVPGEVMGTLLDVTSRRTAEEAVTTRERYLDAMVQVQRRM---M 183

Query: 593 SHEI 596
            H++
Sbjct: 184 GHDL 187


>gi|294501967|ref|YP_003565667.1| two-component sensor histidine kinase WalK [Bacillus megaterium QM
           B1551]
 gi|294351904|gb|ADE72233.1| two-component sensor histidine kinase WalK [Bacillus megaterium QM
           B1551]
          Length = 635

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 88/391 (22%), Positives = 170/391 (43%), Gaps = 33/391 (8%)

Query: 426 ENMPQNGIEPEDVDTRINKRKM--EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           + + Q  +   ++  ++ + +   E E  +L S+L   +DG+   +R+G ++  N   + 
Sbjct: 263 DEIGQLALTFNNLTRKLQEAQATTEGERRKLSSVLAHMTDGVIATDRKGRVILINDPAAA 322

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +     E +L  P    L+          L    S         I   STK +  + LR 
Sbjct: 323 MLNVSRETVLSDPVVSLLDLEETHTFESLLANQES--------LILDFSTKSDPFI-LRA 373

Query: 544 IIKKLPFS----SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
            I  +       +   + +HDI+E ++                  + +F+A VSHE+RTP
Sbjct: 374 TISAIQKETGFINGIIIVLHDITEQEKIDQD--------------RREFVANVSHELRTP 419

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           LT +  + + +    +          + N        ++ +VNDLL +SK++S       
Sbjct: 420 LTTMRSYLDALAEGAWQ--DKDLAPTFLNVTQTETERMIRLVNDLLQLSKLDSQDYRFSR 477

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719
           +P++  +     I   ++   +  I       N    +  D   + Q+  NI+SNAI ++
Sbjct: 478 DPINFVKFYHYIIDRFEMTIEQ-GISFVRDLPNEAIYVAIDQDKITQVLDNIISNAIKYS 536

Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
           P GG I  S    ++ E+++ ++D G+G+    L K  + F ++  ++  +  GTGLGL 
Sbjct: 537 PEGGTITFSIAQHTH-EIVVSIKDQGMGIPKSNLAKIFERFYRVDKARTRKLGGTGLGLA 595

Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           +AK +++A+ G+ +  S   KGT I    P+
Sbjct: 596 IAKEIIEAHDGRIWADSQEGKGTTIYFTLPI 626


>gi|221640855|ref|YP_002527117.1| sensor protein [Rhodobacter sphaeroides KD131]
 gi|221161636|gb|ACM02616.1| Sensor protein [Rhodobacter sphaeroides KD131]
          Length = 849

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 123/604 (20%), Positives = 231/604 (38%), Gaps = 57/604 (9%)

Query: 235 RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES-SLPEQEDFHTINLNQYTKKQYFGTLQ 293
            ++ K++         + +L+ ++  L  + E  ++  +     I   +   K      +
Sbjct: 2   DIEQKLAKERRARLAAERLLEYKQRELFAANEKLAIHARALSDQIIEQRAVVKTALSEAE 61

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSF---- 348
               ++  +LS              E    +++D     F V+  G  L  AN ++    
Sbjct: 62  KLKGQNSRFLSEL--ERAHTAAVMAERRLWDSIDAIEDGFAVFDAGQRLVAANEAYRCHF 119

Query: 349 --LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
             L +    ++ D+        L+D      ++  + ++    +        R  T QW 
Sbjct: 120 EGLEVRPGMALADLLQLATTHGLIDLRGEPADHWRQRMIRRWDEDPVEPEIVRRATGQW- 178

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
                          N+   +     +  +  +             +L + ++A  DG  
Sbjct: 179 -----------LRLVNRRARDGDMVSLLIDITEQM-----------RLRAAIDAIPDGFV 216

Query: 467 IINREGIILSTNRAVSKLF---------GYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
           + +R   ++  N     ++         G P E+ILR                 +L + L
Sbjct: 217 LFDRAERLVLCNDRYRAIYPRSAEALRPGAPFEEILRHGLAHGQFPEAAGREEEWLADRL 276

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI 577
           +                + + L +   I+             DI+E K+++  L  A+  
Sbjct: 277 AAFRHLGGAAE--QQLDDGRWLRV---IEHETPDGGRVGLGVDITELKRQQAALESARAA 331

Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
           AE  S  KS FLA +SHEIRTP+  I+G ++++               ++  I  SG  +
Sbjct: 332 AEAASRAKSAFLANMSHEIRTPMNGIVGMADLLCETVL----TEDQRLFSETIRSSGEAL 387

Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-R 696
           L I+ND+LD SKIE+ ++ LH EP  L+  + E   L+Q  A  K I +   F   +P R
Sbjct: 388 LVIINDILDYSKIEANRLTLHPEPFDLERTIHEVAMLLQPKARAKGIDLLIDFDLFLPTR 447

Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT---SNEEVILRVRDTGVGMTNYEL 753
            + D   ++Q+  N++ NA+ FT +G  +I            ++ + V DTG+G+    L
Sbjct: 448 FVGDPGRLRQVLTNLIGNAVKFTAAGHVLIRVVGLEVAPGRHDLRVTVEDTGIGIAPEHL 507

Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL--IEIIFPLY 811
           +     F QI      R EGTGLGL + + +++   G  ++ S P +G+     +  P  
Sbjct: 508 DHVFGEFNQIEAEATRRFEGTGLGLAITRRLIELMQGAVWVESEPGRGSCFGFRLTLPAA 567

Query: 812 DTSH 815
           D   
Sbjct: 568 DDEA 571


>gi|303247088|ref|ZP_07333363.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
 gi|302491514|gb|EFL51399.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
          Length = 871

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 115/693 (16%), Positives = 229/693 (33%), Gaps = 39/693 (5%)

Query: 139 RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
              +W      +P     L            +  R  +G R    + +   D       +
Sbjct: 40  TNASWRDNFAFYPPIIEKLRQTRADIVRGYLAVERHLAGER---DIRLADADAFFEQAAR 96

Query: 199 RLDKKFSHLH------EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD 252
            +    + L       E+    S +E    D   +      L   +  +  T       +
Sbjct: 97  SVADIQAQLRSVSTMSELSDNLSKLELRLGDYHQEILRFGALSQDSLKAVATRKSYFGVE 156

Query: 253 VLKT-EKYPLLTSEESSLPEQEDFHTINLNQYTKK--QYFGTLQNNSKESFEYLSHRNHP 309
              +      L     ++  +   +         +   +              L+     
Sbjct: 157 RQASYAIMEKLADAIDAMLGRRIANVARQQNRLNQVLFFVWLSFLAFLGISLALAGARRR 216

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
                  E E       D+      +     G +   N +      Y   + I       
Sbjct: 217 KAEKALTESEGKYRLLFDQVMDVILLVDEETGRILDCNQAVATEWGYDREELIGREPSRL 276

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
            L           I+     R              ++                   F   
Sbjct: 277 RLPPRRASPVATEIRYADGRRVVMRETRLVTHFGEVR---------NASVRTGFFTFGGR 327

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA-----IINREGIILSTNRAVS 482
             +  I  +  +   ++  ++     L  + +   DG+      + +R    L  ++ V 
Sbjct: 328 QVRLEIFRDVTERNKDETALKERAAMLRGLGDNLPDGVIYKYELLADRTRRFLYVSQGVE 387

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
           +LF   V D L    +V        +      E+ ++D    ++     +  +  L   +
Sbjct: 388 RLFHVTVPDALADASSVLSRIEPEGLDALRQAEMRAMDSLAVIDVQARFTDGQGTLRWGQ 447

Query: 543 IIIKKLPFSSC---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                   ++    +   + D++  K+ ++ L  AK  AE  S  KS+FLA +SHE+RTP
Sbjct: 448 FRAAPRRTAAGGVLFDGLLFDVTGQKRTEDSLRLAKSEAEAASLAKSEFLANISHEVRTP 507

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  ++G  ++++  R          E+       G  ++ ++ D+LD S IE+G++ L  
Sbjct: 508 LNGVLGMLQLLETSRLSAED----AEHVATALACGRGLVRVLADILDFSLIEAGRLVLRR 563

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHF 718
           +   +   +++   ++ L   +K +      A ++P  +A D   ++QI  N++ NA+ F
Sbjct: 564 DACDIRSVIADVFGVLSLECEKKELCATLDVAGDVPAFIATDAARLRQILFNVVGNAVKF 623

Query: 719 TPSGGQ---IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           TP G     + +++       ++  VRDTG+G+    +E   +PF QI  S   +  GTG
Sbjct: 624 TPRGTVHLSVSLASRRGEETHLLFAVRDTGIGIPEDRIEAIFEPFTQIDGSLTRKYGGTG 683

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           LGL + K +V    G   + S P  GT      
Sbjct: 684 LGLGIVKRLVGLLDGHITVESEPGGGTEFAFTI 716



 Score = 46.6 bits (109), Expect = 0.019,   Method: Composition-based stats.
 Identities = 35/405 (8%), Positives = 101/405 (24%), Gaps = 47/405 (11%)

Query: 89  IDAH-GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
           +D   G + + ++ +    G    ++IG     +               +  +  +    
Sbjct: 243 VDEETGRILDCNQAVATEWGYDREELIGREPSRLRLP------PRRASPVATEIRYADGR 296

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFR-GFGIVHVNRVDNDPRALGKRLDKKFSH 206
            +   E   +    ++    + +    F G +    I       N      K        
Sbjct: 297 RVVMRETRLVTHFGEVRNASVRTGFFTFGGRQVRLEIFRDVTERNKDETALKERAAMLRG 356

Query: 207 LHEIKKG--------HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT--EYYAHKDDVLKT 256
           L +             +   +    +        H+ + + ++  +        + +   
Sbjct: 357 LGDNLPDGVIYKYELLADRTRRFLYVSQGVERLFHVTVPDALADASSVLSRIEPEGLDAL 416

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
            +  +   +  ++ + +   T         Q+    +  +     +       +     +
Sbjct: 417 RQAEMRAMDSLAVIDVQARFTDGQGTLRWGQFRAAPRRTAAGGVLFDGLLFDVTGQKRTE 476

Query: 317 EGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
           +   L     +   +            A   FL    ++    +    G+  LL+  +LS
Sbjct: 477 DSLRLAKSEAEAASL------------AKSEFLANISHEVRTPLNGVLGMLQLLETSRLS 524

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
             +A          R  +   A +          L +     +  +   +          
Sbjct: 525 AEDAEHVATALACGRGLVRVLADILDFSLIEAGRLVLRRDACDIRSVIADVFGVLS---- 580

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSD--GIAIIN-REGIILSTN 478
                     +E E  +LC+ L+   D       +      +  N
Sbjct: 581 ----------LECEKKELCATLDVAGDVPAFIATDAARLRQILFN 615


>gi|163943145|ref|YP_001648029.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           weihenstephanensis KBAB4]
 gi|163865342|gb|ABY46401.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           weihenstephanensis KBAB4]
          Length = 611

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 84/376 (22%), Positives = 161/376 (42%), Gaps = 25/376 (6%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +  +   E E  +L S+L   +DG+   +R+G I+  N    K+     E  L +     
Sbjct: 256 QQARSSTESERRKLSSVLSHMTDGVIATDRKGDIILLNDPAEKMLNVSRETALDQSVLEV 315

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
           L       ++H   E  S+ L  +                  +I K+   ++     ++D
Sbjct: 316 LGIQEEFTLDHLYEEPDSVLLDFSTRNEPYILRAS-----FSVIQKETGKANGLIAVLYD 370

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           ++E ++ + +              + +F+A VSHE+RTPLT +  + E + +  +     
Sbjct: 371 VTEQERIEQE--------------RREFVANVSHELRTPLTTMRSYLEALTDGAWQDPNI 416

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
                +          ++ +VN LL +SK++S +  L  E V   +  +  I   +  + 
Sbjct: 417 APQ--FLTVTQEETERMIRLVNALLQLSKLDSTEHRLMKEWVDFTDFFNNVIDRFE-MSK 473

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV-IL 739
           E+ +  + SF+     I  D   + Q+  NI+SNA+ ++P GG +          E+  +
Sbjct: 474 EQNVSFKRSFSKKSRFIDMDTDKITQVLYNIISNALKYSPEGGTVT--YRLRDRGELLEI 531

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V D G+G+    ++K  + F ++  ++  +  GTGLGL +AK M++A+ G  +  S   
Sbjct: 532 SVSDQGMGIPKENVDKIFERFYRVDKARSRQMGGTGLGLAIAKEMIEAHGGSVWAKSEEG 591

Query: 800 KGTLIEIIFPLYDTSH 815
           KGT I    P+     
Sbjct: 592 KGTTIYFTLPMATDEE 607


>gi|262195026|ref|YP_003266235.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
 gi|262078373|gb|ACY14342.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
          Length = 965

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 109/643 (16%), Positives = 241/643 (37%), Gaps = 51/643 (7%)

Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP--PPHLRMKNKVSSL 243
                    A  +   +  + + +    +  ++ E                + + +V   
Sbjct: 83  ELAEKQRAEAAERARAELLATIFDALPLNIFLKDEDGRFLEANRSTCEVVGKRREEVLGS 142

Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSL----PEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
           T+Y      + K  +     + + +      E+    T +  +         +   S   
Sbjct: 143 TDYDIFPAALAKRLREADRLALDENRIVVEDERLRRRTGDAQEKLYYAAKLPMTRPSDGV 202

Query: 300 FEYLSHRN----HPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKY 354
              L                 +        +D+   P  V    G + ++N +   +T++
Sbjct: 203 RCLLGVSFSFEWREREIDELVKRHEFVQRVLDQLSQPICVKDRSGRVLFSNKAADAVTQF 262

Query: 355 K--SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
              + +D         L        +     + L            R   +        +
Sbjct: 263 TGEASEDERERRVFDDL--------DELSSELPLPLPGGGTRWLRVRRMPLSIGDNEVYS 314

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG 472
           ++                     +  D +  ++++E     + ++++A+ D + + + EG
Sbjct: 315 LSIGD------------------DIDDRKQLEQQLEDAAFMMQTVIDASPDCVIVKDLEG 356

Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
            +L  N A ++    P   ++       L +   +        ++   ++   E      
Sbjct: 357 RVLYVNEAFAREVSVPRAKLVGLSAFDVLPRARAAAQVERERMVVEGGVQVRTEVARPRD 416

Query: 533 TKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
            + + +  L  +  +      S       DI++WKQ +  LS A + AE     K++FLA
Sbjct: 417 ARGKVIYELFELPMRDRSGALSGLISIGRDITDWKQSERALSLAHQQAEAARLAKTEFLA 476

Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650
            +SHE+RTPL+ IIG + +++        +    +Y   ++ SG+ +L+++NDLLDIS++
Sbjct: 477 NISHEVRTPLSGIIGMTSLLRTTEL----DAEQADYVATVEASGSTLLNLINDLLDISRL 532

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIAL 709
           E+G++ L  +   L   V+  ++L +  A EK + +    A  +P  +L D   + Q+  
Sbjct: 533 EAGRIALDEQMFELMPCVTHTVNLARPMAREKGLALDLDIAEGVPAFVLGDELRLSQVLS 592

Query: 710 NILSNAIHFTPSGGQIIISTT----HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           N+++NA+ FT  G ++++  +          +   V DTG+G+   + E   + F Q+  
Sbjct: 593 NLVTNALKFTEQG-RVLVKVSPCGYEDDRIRLRFAVHDTGIGIPEDKREVLFERFTQVDT 651

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           S   R  G GLGL +++ +V+A  G+  + S   +G+      
Sbjct: 652 STTRRYGGAGLGLAISQHLVNAMGGRIELQSREGEGSCFSFAL 694



 Score = 85.8 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/373 (10%), Positives = 83/373 (22%), Gaps = 25/373 (6%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD-LLKRQNTWYGKTT 148
           D  G   E +    + +G    +++G    D+                L           
Sbjct: 116 DEDGRFLEANRSTCEVVGKRREEVLGSTDYDIFPAALAKRLREADRLALDENRIVVEDER 175

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           L    G         A LP+   +       G       R       + +   +    + 
Sbjct: 176 LRRRTGDAQEKLYYAAKLPMTRPSDGVRCLLGVSFSFEWREREIDELVKRH--EFVQRVL 233

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           +       V+     +         +      +S  E      D L      L       
Sbjct: 234 DQLSQPICVKDRSGRVLFSNKAADAVTQFTGEASEDERERRVFDDLDELSSEL------- 286

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
            P              ++       N            +   L    ++   +    +D 
Sbjct: 287 -PLPLPGGGTRW-LRVRRMPLSIGDNEVYSLSIGDDIDDRKQLEQQLEDAAFMMQTVIDA 344

Query: 329 CPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
            P    V    G + Y N +F           +    GLS     P+      ++   + 
Sbjct: 345 SPDCVIVKDLEGRVLYVNEAFAREVSVPRAKLV----GLSAFDVLPRARAAAQVERERMV 400

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
                 +           +    +          ++         I  +  D + ++R +
Sbjct: 401 VEGGVQVRTEV---ARPRDARGKVIYELFELPMRDRSGALSGLISIGRDITDWKQSERAL 457

Query: 448 -----EIEVMQLC 455
                + E  +L 
Sbjct: 458 SLAHQQAEAARLA 470



 Score = 73.1 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/321 (12%), Positives = 75/321 (23%), Gaps = 30/321 (9%)

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
              K  L+      L               +++    L+       E           A 
Sbjct: 37  SVTKAELVAIAGRHLSALAAGTCELTRADAEREADPELRTLLLGIVEL---AEKQRAEAA 93

Query: 315 FDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
                 L     D  P+  F+    G    AN S   +   +  + +      ST  D  
Sbjct: 94  ERARAELLATIFDALPLNIFLKDEDGRFLEANRSTCEVVGKRREEVLG-----STDYDIF 148

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
             +    ++       D   I         +                           G+
Sbjct: 149 PAALAKRLREADRLALDENRIVVEDERLRRRTGDAQEKLYYAAKLPMTRPSDGVRCLLGV 208

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
                       ++      +  +L+  S  I + +R G +L +N+A   +  +  E   
Sbjct: 209 SFSFEWREREIDELVKRHEFVQRVLDQLSQPICVKDRSGRVLFSNKAADAVTQFTGEAS- 267

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553
                   E      +   L E+ S                      LR+    L     
Sbjct: 268 --------EDERERRVFDDLDELSS---------ELPLPLPGGGTRWLRVRRMPLSIGDN 310

Query: 554 YS---LTMHDISEWKQEKNKL 571
                    DI + KQ + +L
Sbjct: 311 EVYSLSIGDDIDDRKQLEQQL 331



 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/230 (12%), Positives = 58/230 (25%), Gaps = 8/230 (3%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D  G +  ++E   + +     K++G+   DV              ++            
Sbjct: 353 DLEGRVLYVNEAFAREVSVPRAKLVGLSAFDVLPRARAAAQVERERMVVEGGVQVRTEVA 412

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
            P +     V  +L  LP+  R+   SG    G                   ++      
Sbjct: 413 RPRDARG-KVIYELFELPMRDRSGALSGLISIG--RDITDWKQSERALSLAHQQAEAARL 469

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
            K    +    +       +P   +     +   TE  A + D + T +    T      
Sbjct: 470 AKTEFLANISHEVR-----TPLSGIIGMTSLLRTTELDAEQADYVATVEASGSTLLNLIN 524

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
              +            +Q F  +   +              L+   D  E
Sbjct: 525 DLLDISRLEAGRIALDEQMFELMPCVTHTVNLARPMAREKGLALDLDIAE 574


>gi|268317258|ref|YP_003290977.1| histidine kinase [Rhodothermus marinus DSM 4252]
 gi|262334792|gb|ACY48589.1| histidine kinase [Rhodothermus marinus DSM 4252]
          Length = 1346

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 118/717 (16%), Positives = 227/717 (31%), Gaps = 36/717 (5%)

Query: 115  GMRLCDVSDILHIDPNNHIGDLLK-RQNTWYG--KTTLWPIEGTNLYVP---IDLAALPI 168
            G R    ++   +         L  R   W G          G    VP    + + + I
Sbjct: 349  GRRWAVYTEKDGLPSAFVRSLFLDSRGRLWIGTLGGLALYENGRFHRVPGFPHEASVMSI 408

Query: 169  -YSRNREFS-GFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFS 226
               R        +  G+   N     P  +  ++      L + +             + 
Sbjct: 409  VEDRQGRIWLAAQNLGVFRQNGERFIPVEVPGQVFTDARLLVDRRGHVWISGDMGLSRWD 468

Query: 227  QQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKK 286
             +             +   + A          Y          PEQ  F T         
Sbjct: 469  GRHWRTFNSKDGLAGNNPYFLAEDLQGRIWFGYHAALGITVYDPEQNRFRTYTTADGLHN 528

Query: 287  QYFGTLQNNSKE--SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYA 344
                ++  + +           +      + +        + +     FF    G L++ 
Sbjct: 529  DAVYSIGVDHQNNIWIGTSRGVDRFDGERFVNYSPLEGYASYESNAGGFFADVDGTLWFG 588

Query: 345  NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
                L     +     +    +            +    V +     T    +AR+  + 
Sbjct: 589  TMDGLSHYNPREDLWNDRPPRVRLTYLQLGDRPVSPDSLVQVSYKANTL---TARVALLS 645

Query: 405  WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
            +     + + +        +             +   I+  +    +      L     G
Sbjct: 646  FFGAEQIQLRYRLRSMDTDWNLTFQPLERNRSWLRKPISSEEGWRPLESPTIFLTNLPAG 705

Query: 465  IAIINREGI--ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522
              ++  +        +R  +  F           F   +           L  +L   + 
Sbjct: 706  FYVLEVQARKPTSDWSRPAAARFEITPPFWQTAWFAALMVT---------LLGLLVGGIH 756

Query: 523  QTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES 582
            +          ++ + L      +          T+ D+   ++ K +L  A +   + S
Sbjct: 757  RYRIYRIEQQKEQLEALVQERTAELQAQKRQLEATLEDL---RRTKEELERANEELVRAS 813

Query: 583  SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
              KS+FLA +SHEIRTP+  ++G +E++              E    I RSG  +L I+N
Sbjct: 814  RLKSEFLANMSHEIRTPMNGVLGMTELLLEMDLTK----EQRECVEIIHRSGETLLTILN 869

Query: 643  DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702
            D+LD SKIE+G++ L     +L E + + I+L    A  K++ +          +  D  
Sbjct: 870  DILDFSKIEAGRLELENIDFNLQETIEDVITLFAPRAAAKQLELICFIEERALEVQGDPH 929

Query: 703  SVKQIALNILSNAIHFTPSGGQIIISTTHTS----NEEVILRVRDTGVGMTNYELEKAMK 758
             ++Q+  N++ NAI FT  G ++++               + VRDTG+G+    L    +
Sbjct: 930  RLRQVLSNLIGNAIKFTERG-EVVVEAELERLDERRAHWRISVRDTGIGIPPDRLSHLFQ 988

Query: 759  PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            PF Q+  S   R  GTGLGL ++K +V+   G   + S   KG+   +  P   +S 
Sbjct: 989  PFTQLDGSTTRRYGGTGLGLAISKQLVEMMGGTIGVESEVGKGSTFTVRIPFRLSSQ 1045


>gi|83814181|ref|YP_446380.1| PAS domain-containing protein [Salinibacter ruber DSM 13855]
 gi|294508317|ref|YP_003572375.1| PAS domain S-box protein [Salinibacter ruber M8]
 gi|83755575|gb|ABC43688.1| PAS domain S-box protein [Salinibacter ruber DSM 13855]
 gi|294344645|emb|CBH25423.1| PAS domain S-box protein [Salinibacter ruber M8]
          Length = 1155

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 124/797 (15%), Positives = 253/797 (31%), Gaps = 93/797 (11%)

Query: 95   LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNT--WYGKTTLWPI 152
            +   +    +  G    +++G  + +V +    DP+         ++T  W G+T  +  
Sbjct: 376  IVYANRAFEEMTGYREEELLGRTV-EVLEGPETDPSVINALQDADRDTRGWEGETINYQK 434

Query: 153  EGTNLY-VPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
            +GT         +   + +   E   +R   I        +     +    +   +    
Sbjct: 435  DGTPYVAHWNTTS---VQAEEAEVE-YRA-SIQRDVTDRREMEERLRDQRSRLRGMANSI 489

Query: 212  KGH------SSVEKEKYDIFSQQSPPPHLRMKNKVS---SLTEYYAHKDDVLKTEKYPLL 262
             G                  S+ +        +  +      +            +    
Sbjct: 490  PGVTYQFYARPDGTRGCHFVSEHAGEVLGLSTDPDAFYEQFDDCVPAPHRARSQNEIEDA 549

Query: 263  TSEESSLPEQEDFHTINLNQYT--KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
              +E     +  F   + ++                  +   +      +      +  +
Sbjct: 550  IEQEMPWRIELPFDRPSGDRLWLLDTATPERRNGELVFNGVMIDITERKTAERALRDERD 609

Query: 321  LTPETVDKCPIPFFVY--SHGN--LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
                  +  P P        G   +   N +F                     +DA  + 
Sbjct: 610  RFESLFESLPTPVMRCTVKDGTSYVSTVNEAFAHTFGVDPEAVEGEN------IDATIVP 663

Query: 377  DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
            D+   +   L R      A    +            +      + +  PE    + I  +
Sbjct: 664  DDAEQEGSALNRRAVQEGALKTEVRRRTKEGPRDFQLQATGRTRGDAPPE---IHAIYTD 720

Query: 437  DVDTRINKRKM--------------------------EIEVMQLCSI---LEATSDGIAI 467
              +    +  +                                L +I   ++A    + +
Sbjct: 721  ITERTRLEETLTYRSELESKIVDISTRFINTPIDDLDREIEAALQAIGAFVDADRSYVFL 780

Query: 468  INREGIILSTN-------------------RAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
             + E     +N                         +          P  V   ++ P  
Sbjct: 781  FDDEAA-TMSNTHEWRTEATASTQSRLQNIPYAETPWFMARMRRREGPLRVPRLEDLPPD 839

Query: 509  MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS------ 562
                   + + +++  L    L        +    + ++  + +   + +  +S      
Sbjct: 840  AAGLRQRLEAGNVQSLLVLPMLNDQDLIGFVGFDAVRQQRDWDADTVMLLRVLSDAISNA 899

Query: 563  -EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
             + K  + ++  AK+ AE  +  KS FLA +SHEIRTPLT+IIGF+E I ++       P
Sbjct: 900  LQRKTAEKEMLAAKEEAEDANRMKSVFLANMSHEIRTPLTSIIGFAEAIGDELGDETAGP 959

Query: 622  RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
                +A  I++SGN +L+ ++ +L++SK+E+G+M+L  EPV+L    +E        A  
Sbjct: 960  VLR-FAQLIEKSGNRLLETLDGVLNLSKLEAGEMDLTIEPVNLAVQTAETADQFAPQAQA 1018

Query: 682  KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
              I + T   +      AD  +V  +  N++SNAI +T  GG++ +     +    ++ +
Sbjct: 1019 SGISLHTDLDDAPVWARADEGAVHIVLRNLISNAIKYTNEGGEVEVQVR-DAGTAAVMAI 1077

Query: 742  RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
             DTG+GM   ++    + F Q         EGTGLGL + K  VD   G   + +    G
Sbjct: 1078 EDTGIGMNPEQVTDLFEAFRQASEGLGREYEGTGLGLAVTKQAVDHMNGSIDVETEKGVG 1137

Query: 802  TLIEIIFPLYDTSHPHD 818
            T   +  P    + P D
Sbjct: 1138 TRFVVRLP--TAASPSD 1152



 Score =  120 bits (301), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 51/561 (9%), Positives = 143/561 (25%), Gaps = 67/561 (11%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            +       L   ++   +  G  + + I             D    + +  +       
Sbjct: 214 IYRSTPEDGLVYANQAFAELFGYESPEAILQADSASFYANPSDRQRLLKEEHEADGLDQM 273

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +      +GT     +  ++  +   + +   + G   V         +   + L +   
Sbjct: 274 EVRFRRKDGTPFIGLV--SSTVVRDADGKPQYYDG--AVTDITERKQRQRRLRVLSEVVE 329

Query: 206 HLHE----------------------------IKKGHSSVEKEKYDIFSQQSPPPHLR-- 235
              +                            + K  SS +     I         +   
Sbjct: 330 QADDGILVTALPRNGTPTFGDLAFANGEPDALVSKNGSSGDGANPPIVYANRAFEEMTGY 389

Query: 236 MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDF--HTINLNQYTKKQYFGTLQ 293
            + ++   T       +   +    L  ++  +   + +   +  +   Y       ++Q
Sbjct: 390 REEELLGRTVEVLEGPETDPSVINALQDADRDTRGWEGETINYQKDGTPYVAHWNTTSVQ 449

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF------FVYSHGNLF---YA 344
               E     S +   +     +E        +             F           + 
Sbjct: 450 AEEAEVEYRASIQRDVTDRREMEERLRDQRSRLRGMANSIPGVTYQFYARPDGTRGCHFV 509

Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
           +     +    +  D           D    + + A     +  +    +     L   +
Sbjct: 510 SEHAGEVLGLSTDPD-----AFYEQFDDCVPAPHRARSQNEIEDAIEQEMPWRIELPFDR 564

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
            + +    +  +      +    +  NG+  +  + +  +R +  E  +  S+ E+    
Sbjct: 565 PSGDR---LWLLDTATPERRNGELVFNGVMIDITERKTAERALRDERDRFESLFESLPTP 621

Query: 465 IA---IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
           +    + +    + + N A +  FG   E +  +     +  +        L      + 
Sbjct: 622 VMRCTVKDGTSYVSTVNEAFAHTFGVDPEAVEGENIDATIVPDDAEQEGSALNRRAVQEG 681

Query: 522 RQTLEKITLGSTKEE-KLLSLRII-IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579
              L+      TKE  +   L+     +            DI+E  + +  L++  ++  
Sbjct: 682 A--LKTEVRRRTKEGPRDFQLQATGRTRGDAPPEIHAIYTDITERTRLEETLTYRSELES 739

Query: 580 KESSHKSDFLARVSHEIRTPL 600
           K     + F       I TP+
Sbjct: 740 KIVDISTRF-------INTPI 753



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 43/325 (13%), Positives = 82/325 (25%), Gaps = 12/325 (3%)

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
               E +       ++    +    L       F  L    +P           +     
Sbjct: 11  PFRLEDDALSQEERSRVQDFRLLTLLGAVLILLFGPLYAATNPDAVDPLWARLGVAGLLG 70

Query: 327 DKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
              P  +   +            L +     V    +            L     +  V 
Sbjct: 71  ALVPASYLSRHVRHRFVSWLRGALFIVLVWLVATTTLNHFAGEFAVGLLLGYTIIVAFVG 130

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE----PEDVDTR 441
           +       +     L          ++    P  + N         GI            
Sbjct: 131 VSAQSGRPVTWFPALSLALVGGGLGVSYVTGPGPQINPLILLAGVAGISLAEGVAIRRLL 190

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
             +R +     QL  I    SDGI     E  ++  N+A ++LFGY   + + +  +   
Sbjct: 191 STRRALRNREEQLHVITGNVSDGIYRSTPEDGLVYANQAFAELFGYESPEAILQADSASF 250

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLT 557
             N          E  +  L Q          K+       +    +  +      Y   
Sbjct: 251 YANPSDRQRLLKEEHEADGLDQM---EVRFRRKDGTPFIGLVSSTVVRDADGKPQYYDGA 307

Query: 558 MHDISEWKQEKNKLSHAKKIAEKES 582
           + DI+E KQ + +L    ++ E+  
Sbjct: 308 VTDITERKQRQRRLRVLSEVVEQAD 332


>gi|42521923|ref|NP_967303.1| sensory transduction histidine kinase [Bdellovibrio bacteriovorus
           HD100]
 gi|39574453|emb|CAE77957.1| Sensory transduction histidine kinase [Bdellovibrio bacteriovorus
           HD100]
          Length = 1132

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 83/336 (24%), Positives = 161/336 (47%), Gaps = 15/336 (4%)

Query: 483 KLFGYPVEDILRKP--FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
            L G   ++++     F   +      V +  L E         ++         + L+ 
Sbjct: 647 HLLGLTPDNVVPSYDLFRSLILSEDLPVFDKALAEAHKNIAPFHVDLRMKKQDSND-LIW 705

Query: 541 LRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
           +R   +             +T  DI+E ++ +  L   K  A K S  KS+FLA++SHEI
Sbjct: 706 VRCQGRTEYDDYGNALFMYVTTQDITELRRVEQSLITTKNEALKASQAKSEFLAQMSHEI 765

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTP+ AI+G +E++K  R     +     Y     ++G +++ ++ND+LD+SKIE+G+++
Sbjct: 766 RTPMNAIMGMAELLKETRL----DVDQKYYVTIFCKAGEVLMSLINDILDLSKIEAGEVS 821

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNA 715
           +   P  + + +++   +++  A EK +      A  + P ++ D   ++Q+ +N++ N+
Sbjct: 822 IENIPFDMKKLMADVEDMMKPRALEKGLNCICEIAPGVSPHLMGDPTKLRQVLINLIGNS 881

Query: 716 IHFTPSGGQIIISTTHTSN--EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
           I FT  G Q+ +      +  + +++ + DTG+G+         + F Q  NS   +  G
Sbjct: 882 IKFTNKG-QVRLVIGKNPSKKDTLLISITDTGIGIPEDRQHMIFQKFSQADNSVTRKYGG 940

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           TGLGL ++K++V+   G+ +  S P  GT      P
Sbjct: 941 TGLGLAISKSLVELMGGQIWFKSRPGTGTTFFFTIP 976


>gi|126460803|ref|YP_001041917.1| histidine kinase [Rhodobacter sphaeroides ATCC 17029]
 gi|126102467|gb|ABN75145.1| histidine kinase [Rhodobacter sphaeroides ATCC 17029]
          Length = 849

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 123/604 (20%), Positives = 230/604 (38%), Gaps = 57/604 (9%)

Query: 235 RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES-SLPEQEDFHTINLNQYTKKQYFGTLQ 293
            ++ K++         + +L+ ++  L  + E  ++  +     I   +   K      +
Sbjct: 2   DIEQKLAKERRARLAAERLLEYKQRELFAANEKLAIHARALSDQIIEQRAVVKTALSEAE 61

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSF---- 348
               ++  +LS              E    +++D     F V+  G  L  AN ++    
Sbjct: 62  KLKGQNSRFLSEL--ERAHTAAVMAERRLWDSIDAIEDGFAVFDAGQRLVAANEAYRCHF 119

Query: 349 --LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
             L +    ++ D+        L+D      +   + ++    +        R  T QW 
Sbjct: 120 EGLEVRPGMALADLLQLATTHGLIDLRGEPADLWQQRMIRRWDEDPVEPEIVRRCTGQW- 178

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
                          N+   +     +  +  +             +L + ++A  DG  
Sbjct: 179 -----------LRLVNRRARDGDMVSLLIDITEQM-----------RLRAAIDAIPDGFV 216

Query: 467 IINREGIILSTNRAVSKLF---------GYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
           + +R   ++  N     ++         G P E+ILR                 +L + L
Sbjct: 217 LFDRAERLVLCNDRYRAIYPRSAEALRPGAPFEEILRHGLAHGQFPEALGREEEWLADRL 276

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI 577
           +                + + L +   I+             DI+E K+++  L  A+  
Sbjct: 277 AAFRHLGGAAE--QQLDDGRWLRV---IEHETPDGGRVGLGVDITELKRQQAALESARAA 331

Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
           AE  S  KS FLA +SHEIRTP+  I+G ++++               ++  I  SG  +
Sbjct: 332 AEAASRAKSAFLANMSHEIRTPMNGIVGMADLLCETVL----TEDQRLFSETIRSSGEAL 387

Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-R 696
           L I+ND+LD SKIE+ ++ LH EP  L+  + E   L+Q  A  K I +   F   +P R
Sbjct: 388 LVIINDILDYSKIEANRLTLHPEPFDLERTIHEVAMLLQPKARAKGIDLLIDFDLFLPTR 447

Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT---SNEEVILRVRDTGVGMTNYEL 753
            + D   ++Q+  N++ NA+ FT +G  +I            ++ + V DTG+G+    L
Sbjct: 448 FVGDPGRLRQVLTNLIGNAVKFTAAGHVLIRVVGLEVAPGRHDLRVTVEDTGIGIAPEHL 507

Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL--IEIIFPLY 811
           +     F QI      R EGTGLGL + + +++   G  ++ S P +G+     +  P  
Sbjct: 508 DHVFGEFNQIEAEATRRFEGTGLGLAITRRLIELMQGAVWVESEPGRGSCFGFRLTLPAA 567

Query: 812 DTSH 815
           D   
Sbjct: 568 DDEA 571


>gi|300869423|ref|ZP_07114008.1| hypothetical protein OSCI_4080002 [Oscillatoria sp. PCC 6506]
 gi|300332553|emb|CBN59206.1| hypothetical protein OSCI_4080002 [Oscillatoria sp. PCC 6506]
          Length = 1748

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 109/663 (16%), Positives = 240/663 (36%), Gaps = 28/663 (4%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            +   G   +++  L   +G    +++ +R  +++    +  N    + +           
Sbjct: 992  VSPEGKYFKVNASLCNFLGYTEAELLDLRFQEITHPDDVANNLKFANQILAGEINSYNIE 1051

Query: 149  LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                      V   L+   +     +   F     +             +  + +F  + 
Sbjct: 1052 KRYFTKQGQLVWGLLSVSLVRDVYGKPLYF--VSQIQDITDRKQAEIALQNSEIRFRRVF 1109

Query: 209  EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE-------KYPL 261
            E           + +I         +   ++         H D +  TE           
Sbjct: 1110 ESSVVGMIFADFQGNILDANDRFLKMVGYSREELDAGTIIHWDTLTPTEYLPADFAAMER 1169

Query: 262  LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF-EYLSHRNHPSLSAYFDEGEN 320
            L    +  P +++++  + ++ +       L ++  ++    +   +         E + 
Sbjct: 1170 LMRSGAIEPWEKEYYRKDGSRISVLIGMAFLPDSGDQTICVVVDISDRKQAELALQESQR 1229

Query: 321  LTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSV--DDIEIAGGLSTLLDAPKLS 376
               +  D  P   ++Y        Y N     +  Y+      + I    + +      S
Sbjct: 1230 FIQKIADSSPNILYLYDLQTQRNVYVNHEISSILGYQPEVIQAMGINFTQNLMHPDDLRS 1289

Query: 377  DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE-KANQFPENMPQNGIEP 435
               A    +    D   I    R+   + +      +         +   +     G   
Sbjct: 1290 VLPAYSEQISMAQDGEIIDTEYRM---RHSNGEWRWLHSRDSVFSRDANGQVKQIIGNAQ 1346

Query: 436  EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
            +  + +     +E    +L +ILEA++D I I +  G  +  N A+ KL G   + ++ +
Sbjct: 1347 DITERKR----LEQAQNRLIAILEASTDYILIADLTGNAIWNNSALKKLRGLDADAVVTQ 1402

Query: 496  PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR----IIIKKLPFS 551
                         M       +++     L    +    E + + +              
Sbjct: 1403 QNAADYHPQWAVEMLEQQAITIAIAKGSWLG-ENVLLDAENQQIPVSQLLLAHRSPHGEV 1461

Query: 552  SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
              +S  M D+  +K+ + +L        + +  K +FLA +SHE+RTPL AI+G +E ++
Sbjct: 1462 EFFSTIMRDMRVYKEYEQQLERTNAELIRATRLKDEFLANMSHELRTPLNAILGMTEGLQ 1521

Query: 612  NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
            +  FG + N   I+    I+ SG  +L+++ND+LDI+KIESG+M L +  VS++     +
Sbjct: 1522 DGVFG-IVNESQIKALETIEHSGTHLLELINDILDIAKIESGQMELEYTSVSINYLCQSS 1580

Query: 672  ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
            ++ ++  A +K + +      N+P +  D R ++Q+ +N+L+NA+ FTP GG I +  + 
Sbjct: 1581 LAFIKQQALQKHLQVDIKIPLNLPDLWVDERRIRQVLINLLNNAVKFTPEGGHITLEVSR 1640

Query: 732  TSN 734
               
Sbjct: 1641 QRR 1643



 Score =  157 bits (397), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 55/553 (9%), Positives = 142/553 (25%), Gaps = 48/553 (8%)

Query: 86   TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID----PNNHIGDLLKRQN 141
             +  D+      +S+   +  G      +G    +       D                 
Sbjct: 729  IFRFDSPLNCVYVSDRWSEMTGRPKESALGRGWMEALHPEERDFLLAKYAESYAQSTSGQ 788

Query: 142  TWYG--KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199
                  +      +G+  +  + +A            G+   G +          A   +
Sbjct: 789  YLLHHSEGRHLRPDGSVNWFYVQVAQE--IDAAGRTIGY--IGTLTDISDRIQVEAELAK 844

Query: 200  LDKKFSHLHEIKKGHSSVEK-------EKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD 252
              + +  L +   G                D   +    P     ++      +   +D 
Sbjct: 845  SRQNYYSLIQSVNGVVWEYDLNNNRFTFVSDKAEELLGYPIEAWLSEPDFWRNHVYAEDV 904

Query: 253  VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK----ESFEYLSHRNH 308
            V   + +      +++   +      + +            + +      S   +  R  
Sbjct: 905  VKAEKLFNDAIQNQNNCELEYRMVAADGSWVWVYDISSLNFDRNGKATMSSGVLIDIRKR 964

Query: 309  PSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
                      E    +  D   +    V   G  F  N S      Y   + +       
Sbjct: 965  KQTEEALQLSEERFRKAFDNTVVGMCLVSPEGKYFKVNASLCNFLGYTEAELL------D 1018

Query: 368  TLLDAPKLSDNNAIKP-VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
                     D+ A               + +          +    +        + + +
Sbjct: 1019 LRFQEITHPDDVANNLKFANQILAGEINSYNIEKRYFTKQGQLVWGL-LSVSLVRDVYGK 1077

Query: 427  NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
             +       +  D +  +  ++   ++   + E++  G+   + +G IL  N    K+ G
Sbjct: 1078 PLYFVSQIQDITDRKQAEIALQNSEIRFRRVFESSVVGMIFADFQGNILDANDRFLKMVG 1137

Query: 487  YPVEDILRKPFTVF---LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
            Y  E++       +               +  ++     +  EK           + + +
Sbjct: 1138 YSREELDAGTIIHWDTLTPTEYLPADFAAMERLMRSGAIEPWEKEYYRKDGSRISVLIGM 1197

Query: 544  IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR----------VS 593
                        + + DIS+ KQ +  L  +++  +K +    + L            V+
Sbjct: 1198 AFLPDSGDQTICVVV-DISDRKQAELALQESQRFIQKIADSSPNILYLYDLQTQRNVYVN 1256

Query: 594  HEIRTPLTAIIGF 606
            HEI    ++I+G+
Sbjct: 1257 HEI----SSILGY 1265



 Score =  138 bits (347), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 48/507 (9%), Positives = 130/507 (25%), Gaps = 31/507 (6%)

Query: 96   KEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK---RQNTWYGKTTLWPI 152
               S    +  G    + I     +    +H D  + +   +       T + +      
Sbjct: 610  IFFSSRWKQMRGFTDDE-IPNSPDECLSRIHPDDYDRVMAAVDDHFAGKTEFFEVEYRVK 668

Query: 153  EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212
               N Y+ +   A  +   + E     G              A  +  +++++ L     
Sbjct: 669  RKDNSYMWVLNRAQGLRDESGEIVRMSGSDT--DITQRKLAEAALRESERRYATLAAAAP 726

Query: 213  GHSSVEKEKY--DIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270
                           S +      R K          A   +           S   S  
Sbjct: 727  VAIFRFDSPLNCVYVSDRWSEMTGRPKESALGRGWMEALHPEERDFLLAKYAESYAQSTS 786

Query: 271  EQEDFHTINLNQYTKK-----------QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
             Q   H                     Q                   +   + A   +  
Sbjct: 787  GQYLLHHSEGRHLRPDGSVNWFYVQVAQEIDAAGRTIGYIGTLTDISDRIQVEAELAKSR 846

Query: 320  NLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
                  +       + Y   +    + +     L  Y     +         + A  +  
Sbjct: 847  QNYYSLIQSVNGVVWEYDLNNNRFTFVSDKAEELLGYPIEAWLSEPDFWRNHVYAEDVVK 906

Query: 378  NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
               +    +   +   +              + + +  I     ++  +    +G+  + 
Sbjct: 907  AEKLFNDAIQNQNNCELEYRMVA-----ADGSWVWVYDISSLNFDRNGKATMSSGVLIDI 961

Query: 438  VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
               +  +  +++   +     + T  G+ +++ EG     N ++    GY   ++L   F
Sbjct: 962  RKRKQTEEALQLSEERFRKAFDNTVVGMCLVSPEGKYFKVNASLCNFLGYTEAELLDLRF 1021

Query: 498  TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---- 553
                  +  +    +  +IL+ ++           TK+ +L+   + +  +         
Sbjct: 1022 QEITHPDDVANNLKFANQILAGEINS-YNIEKRYFTKQGQLVWGLLSVSLVRDVYGKPLY 1080

Query: 554  YSLTMHDISEWKQEKNKLSHAKKIAEK 580
            +   + DI++ KQ +  L +++    +
Sbjct: 1081 FVSQIQDITDRKQAEIALQNSEIRFRR 1107



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/568 (7%), Positives = 135/568 (23%), Gaps = 89/568 (15%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D        +    +  G    ++ G          ++D        ++       +  L
Sbjct: 304 DGEFRFIGYNPTAERLTGKSNQEIRGTSPGKKVRQRYVD-------CIQAGVPITYEECL 356

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR---------- 199
              E    ++       PI   +      R  G            +  K           
Sbjct: 357 IFREVPTWWMTT---LNPIRDASSRIC--RIVGTSINITERKQAESQLKIQNAILERIAK 411

Query: 200 -----------LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR------------- 235
                      L    + L +        +++        +  P                
Sbjct: 412 AEPLGEILETLLQAMETQLVDAICSIMLCDRDGKLHLGAAAQLPAAYLQAIDGVAIGEGV 471

Query: 236 ------------------MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHT 277
                               + +    +  A +  +      P++++    L     +H 
Sbjct: 472 GSCGTAAFRQETVIVSDIATDPLWQNFKELALEHGLQACWSVPVISNNGLVLGTFAVYHR 531

Query: 278 -------INLNQYTKKQYFGTLQNNSKESFEYLSHRNHP------SLSAYFDEGENLTPE 324
                    L+          +    +++ + L   N          +A     E     
Sbjct: 532 HIHTPNQQELSVVALATNIAGIAIERQQATQALEQLNQELETKVEERTAALHASEERWQL 591

Query: 325 TVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
            +       + ++   N  + +  +  +  +   +           L      D + +  
Sbjct: 592 ALKGSNDGIWDWNLKTNQIFFSSRWKQMRGFTDDEI---PNSPDECLSRIHPDDYDRVMA 648

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
            +                  + +  + + +        ++  E +  +G + +    ++ 
Sbjct: 649 AVDDHFAGKTEFFEVEYRVKRKDN-SYMWVLNRAQGLRDESGEIVRMSGSDTDITQRKLA 707

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
           +  +     +  ++  A    I   +     +  +   S++ G P E  L + +   L  
Sbjct: 708 EAALRESERRYATLAAAAPVAIFRFDSPLNCVYVSDRWSEMTGRPKESALGRGWMEALHP 767

Query: 504 NTPSVMNHYLTEILSL---DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSL 556
                +     E  +                   +  +    + + +   ++     Y  
Sbjct: 768 EERDFLLAKYAESYAQSTSGQYLLHHSEGRHLRPDGSVNWFYVQVAQEIDAAGRTIGYIG 827

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSH 584
           T+ DIS+  Q + +L+ +++        
Sbjct: 828 TLTDISDRIQVEAELAKSRQNYYSLIQS 855



 Score = 77.4 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 35/292 (11%), Positives = 80/292 (27%), Gaps = 27/292 (9%)

Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDI 360
                   S     +         V        +  +  +    N ++L  T+ +  D +
Sbjct: 139 LTQTVLQLSEGEEAEAILYQYQRVVSTMTDGIALLDNNYIYRLVNQAYLDRTQKQWGDIV 198

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
               G S      +      I+P              A     Q      + +T+ P+ +
Sbjct: 199 ----GHSVAHLHGETVFKTIIQPHFDRCLAGEVQEYEAW-FDYQNAGRRFIKVTYYPYIE 253

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN--REGIILST- 477
            +   +         +    +  +  ++     L SI E     I  ++   +G      
Sbjct: 254 LD--GKISGVVVTTQDRTALKQTQAVLQENEQFLRSIYEGVEQAIFTVDVLEDGEFRFIG 311

Query: 478 -NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
            N    +L G   ++I                +     + +   +  T E+  +      
Sbjct: 312 YNPTAERLTGKSNQEIRGTS--------PGKKVRQRYVDCIQAGVPITYEECLIFRE--- 360

Query: 537 KLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
                   +  +  +S        T  +I+E KQ +++L     I E+ +  
Sbjct: 361 VPTWWMTTLNPIRDASSRICRIVGTSINITERKQAESQLKIQNAILERIAKA 412



 Score = 74.7 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 50/559 (8%), Positives = 146/559 (26%), Gaps = 84/559 (15%)

Query: 89  IDAHGYLKEISEE--------LPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ 140
           +D +   + +++             +G+    + G  +       H D    +   ++  
Sbjct: 173 LDNNYIYRLVNQAYLDRTQKQWGDIVGHSVAHLHGETVFKTIIQPHFD--RCLAGEVQEY 230

Query: 141 NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
             W+     +   G      I +   P    + + SG                +A+ +  
Sbjct: 231 EAWFD----YQNAG---RRFIKVTYYPYIELDGKISGV--VVTTQDRTALKQTQAVLQEN 281

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
           ++    ++E  +          D   +     +     +++  +          K  +  
Sbjct: 282 EQFLRSIYEGVEQAIFTVDVLED--GEFRFIGYNPTAERLTGKSNQEIRGTSPGKKVRQR 339

Query: 261 LLTSEESSLP-EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
            +   ++ +P   E+                 +++ S      +    + +     +   
Sbjct: 340 YVDCIQAGVPITYEECLIFREVPTWWMTTLNPIRDASSRICRIVGTSINITERKQAESQL 399

Query: 320 NLTPETVDKC----PIP---------------------FFVYSHGNLFYANPS---FLLL 351
            +    +++     P+                            G L     +      L
Sbjct: 400 KIQNAILERIAKAEPLGEILETLLQAMETQLVDAICSIMLCDRDGKLHLGAAAQLPAAYL 459

Query: 352 TKYKSVDDIEIAG--GLSTLLDAPKLSDNNAIKPVM-------LYRSDRTCIAASARLHT 402
                V   E  G  G +       +  + A  P+        L    + C +     + 
Sbjct: 460 QAIDGVAIGEGVGSCGTAAFRQETVIVSDIATDPLWQNFKELALEHGLQACWSVPVISNN 519

Query: 403 IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME-------------- 448
                  ++    I      +         I    ++ +   + +E              
Sbjct: 520 GLVLGTFAVYHRHIHTPNQQELSVVALATNIAGIAIERQQATQALEQLNQELETKVEERT 579

Query: 449 ----IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF--LE 502
                   +    L+ ++DGI   N +   +  +    ++ G+  ++I   P      + 
Sbjct: 580 AALHASEERWQLALKGSNDGIWDWNLKTNQIFFSSRWKQMRGFTDDEIPNSPDECLSRIH 639

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM---- 558
            +    +   + +  +    +  E       K+   + +    + L   S   + M    
Sbjct: 640 PDDYDRVMAAVDDHFA-GKTEFFEVEYRVKRKDNSYMWVLNRAQGLRDESGEIVRMSGSD 698

Query: 559 HDISEWKQEKNKLSHAKKI 577
            DI++ K  +  L  +++ 
Sbjct: 699 TDITQRKLAEAALRESERR 717



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/187 (11%), Positives = 52/187 (27%), Gaps = 5/187 (2%)

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM---QLCSILEATSDGIAI 467
             +  +P    ++    + ++ +      T +   + E       Q   ++   +DGIA+
Sbjct: 113 HQICHLPVLNGDRIIGLLTKDILTEILTQTVLQLSEGEEAEAILYQYQRVVSTMTDGIAL 172

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
           ++   I    N+A          DI+         +     +     +       Q  E 
Sbjct: 173 LDNNYIYRLVNQAYLDRTQKQWGDIVGHSVAHLHGETVFKTIIQPHFDRCLAGEVQEYEA 232

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
                    + + +            S   +T  D +  KQ +  L   ++         
Sbjct: 233 WFDYQNAGRRFIKVTYYPYIELDGKISGVVVTTQDRTALKQTQAVLQENEQFLRSIYEGV 292

Query: 586 SDFLARV 592
              +  V
Sbjct: 293 EQAIFTV 299


>gi|302342756|ref|YP_003807285.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM 2075]
 gi|301639369|gb|ADK84691.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM 2075]
          Length = 1224

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 115/778 (14%), Positives = 253/778 (32%), Gaps = 59/778 (7%)

Query: 69   DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGN-YAFKMIGMRLCDVSDILHI 127
            +SE  F               D  G    +++   +  G   A  ++G  + +       
Sbjct: 331  ESERRFRTLVDSAPEAIFIQTD--GRFAYVNQAAVRLYGAGAADDLLGAAVIERFHPDDR 388

Query: 128  DPNNHIGDLL--KRQNTWYGKTTLWPIEGTNLYVPIDLAALP--IYSRNREFSGFRGFGI 183
                     L   + +    +  +  ++G    V ++++A+P     R+           
Sbjct: 389  QKVRERIRDLNQAKLSVPLIEERILRLDG--AVVDVEVSAVPFCYQGRDGALV------F 440

Query: 184  VHVNRVDNDPRALGKRLDKKFSHLHEIKK-GHSSVEKEKYDIFSQQSPPPHLRMKNKVSS 242
                          +  ++    +      G   V +      +++        K ++  
Sbjct: 441  ARDVSERKRAERAMRESEEMMRSIFRAAPIGIGVVSRRVLLDVNERFCEMTGYAKEEIIG 500

Query: 243  LTEYYAHK--------DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294
                  +               +     T    +  +++D   I++   +       L  
Sbjct: 501  QNAVMLYPTREEFDYVGAEKYRQIAERGTGTVETRFKRKDGRAIHVLMSSTPLNPSDLA- 559

Query: 295  NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTK 353
             +  +F  L             +  +L   T+D       +    G +   N ++    +
Sbjct: 560  -AGVTFTALDITERKRDEQALRQSRDLLQSTIDSLSSHMAILDEHGAIIAVNAAWRKFGQ 618

Query: 354  YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN-RENSLA 412
                       G + L    +   N + +  ++ ++    +A     + +++        
Sbjct: 619  SNGFGAQNHGVGENYLEICREARGNWSSEAPLVAQAIGDILAGRREFYYLEYPCHGPGEE 678

Query: 413  MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI--INR 470
              F     +      +            R  +  +     +   +  A+ D I I  ++ 
Sbjct: 679  RWFALRMTSFASGGLLRVVMSHENITQRRHAENALRQSEEKFRLVYSASPDAININRVD- 737

Query: 471  EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530
            +G+ L  N   ++L GY  +D+L +        + P+     +  +        LE    
Sbjct: 738  DGLYLDINEGFTRLTGYTRDDVLGRSSLELNIWHDPADRQRLVAGLREKGYYDNLEAKFR 797

Query: 531  GSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES--SHKSDF 588
               +      +   + ++   SC      DIS+ K+  ++ +  +    +          
Sbjct: 798  RKDQSVGAALMSARLIEIGGQSCIISITRDISDMKRVADEKARLEAQLRQAQKMEAIGTL 857

Query: 589  LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
               ++H+    L AIIG++E+ +        N    +    + RS +    +V  +L  S
Sbjct: 858  AGGIAHDFNNILGAIIGYTELAQELTREGASNA---DELAQVLRSADRARKLVQQILTFS 914

Query: 649  KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIA 708
            +    K+     P+SL++ V +++ +++     K I I T  A ++  + AD   ++QI 
Sbjct: 915  R----KVESDRRPLSLNKIVRQSVGMLEHTLP-KMIRIETDLAADLRPVCADGNQIEQII 969

Query: 709  LNILSNAIHFTPSGGQIIISTT--------------HTSNEEVILRVRDTGVGMTNYELE 754
            LNI  NA    P GG+++I T                   +  +L++ DTG GM     E
Sbjct: 970  LNIAGNAADAMPDGGRLLIETQNAILGEEYCRLHLDARPGQYAMLQISDTGRGMDQRTRE 1029

Query: 755  KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
            +   PF          G+GTGLGL +   +V  + G    +S P  G+  +I  P   
Sbjct: 1030 QIFDPFFTTK----EVGKGTGLGLAIVYGIVKDHGGHVSCYSEPDLGSTFKIFLPAQQ 1083



 Score =  157 bits (397), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 62/558 (11%), Positives = 154/558 (27%), Gaps = 72/558 (12%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D  G     +       G+   ++  + L D++     +    +      +    G+   
Sbjct: 60  DDDGRYLAANHAAGLLTGHTPEELTRLCLWDLTPPAMAEQGRAVWREFLARGELDGEYAR 119

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
              +G    V ++  A+                ++       +   L +R + +   L  
Sbjct: 120 LRRDGG--EVQVEFRAVA------NIWPGAHMSMLRDVGRRKEQERLRQRDEDRLESLLR 171

Query: 210 IKKGHSSVEKEKYDIFSQQS-------------------------------PPPHLRMKN 238
           I +  ++ ++E  D   +++                                   +    
Sbjct: 172 ISQYRAAGDQELLDYALEEAIGLTDSKFGYIYHYSEEHQEFVLNTWSRGVMAQCAVAQPQ 231

Query: 239 KVSSLTEYYAHKDDVLKTEKYPLLTSEESS---------------------LPEQEDFHT 277
            V  L +     + V +     +                            + ++     
Sbjct: 232 TVYDLHKTGVWGEAVRQRRPMVINDFGAPHPLKRGYPPGHVALRKFCTVPVIVDERIVAV 291

Query: 278 INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS 337
             +           ++  +                   +E E      VD  P   F+ +
Sbjct: 292 AGVANKAADYDDADVRQLTLLMDSVWKMLERRRAEQRLEESERRFRTLVDSAPEAIFIQT 351

Query: 338 HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397
            G   Y N + + L    + DD+  A  +          D+       +   ++  ++  
Sbjct: 352 DGRFAYVNQAAVRLYGAGAADDLLGAAVIERF-----HPDDRQKVRERIRDLNQAKLSVP 406

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
                I       + +         Q  +         +  + +  +R M      + SI
Sbjct: 407 LIEERILRLDGAVVDVEVSAVPFCYQGRD--GALVFARDVSERKRAERAMRESEEMMRSI 464

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
             A   GI +++R  ++L  N    ++ GY  E+I+ +   +               +  
Sbjct: 465 FRAAPIGIGVVSRR-VLLDVNERFCEMTGYAKEEIIGQNAVMLYPTREEFDYVGA-EKYR 522

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHA 574
            +  R T    T    K+ + + + +    L  S      + T  DI+E K+++  L  +
Sbjct: 523 QIAERGTGTVETRFKRKDGRAIHVLMSSTPLNPSDLAAGVTFTALDITERKRDEQALRQS 582

Query: 575 KKIAEKESSHKSDFLARV 592
           + + +      S  +A +
Sbjct: 583 RDLLQSTIDSLSSHMAIL 600



 Score = 78.9 bits (193), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 23/166 (13%), Positives = 50/166 (30%), Gaps = 3/166 (1%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
              A +  +   Q       +D    +  +     +L +I E   D I I + +G  L+ 
Sbjct: 9   TAVATRPGDPGGQGRQPRAGLDGGRPRAAVTTTAQRLLAIFEKARDAILICDDDGRYLAA 68

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
           N A   L G+  E++ R                    E L+      L+       ++  
Sbjct: 69  NHAAGLLTGHTPEELTRLCLWDLTPPAMAEQGRAVWREFLARGE---LDGEYARLRRDGG 125

Query: 538 LLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
            + +        +   +   + D+   K+++      +   E    
Sbjct: 126 EVQVEFRAVANIWPGAHMSMLRDVGRRKEQERLRQRDEDRLESLLR 171


>gi|256827996|ref|YP_003156724.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256577172|gb|ACU88308.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 837

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 120/735 (16%), Positives = 242/735 (32%), Gaps = 101/735 (13%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMI--GM-RLCDVSDILH-IDPNNHIGDLLKRQNTWYG 145
           DA   +  IS+      G  A +++  G     D+    +  +      + +K       
Sbjct: 29  DAELGMDFISQGCQGLTGYSAEELLSGGRLSFNDLVLPEYMPEIRKSWKEGIKNHAQVQL 88

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +  +   +G   +V      +P+ S N E +   G  I                 +K   
Sbjct: 89  EFEIMTADGQPKWVWEV--GVPVPSCNGEITTLEGLII--DITPRKLAEKNSLLREKALE 144

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV-LKTEKYPLLTS 264
                          +  +    +        ++V     +        L ++ Y     
Sbjct: 145 LAATTSLELLLEPDLEQSMARILARLGQGTDTDRVYVFRNHPETDSGTVLTSQIYEWTRD 204

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
              +  +  D   + +N  T +         S                            
Sbjct: 205 GIPTQIDNPDLQNLPMNDVTPRWLAELRAGRSI--------------------------- 237

Query: 325 TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
                                   +        + +E  G +S L+   +L         
Sbjct: 238 ---------------------KGLVRDFPADEKEILEPQGIISILVVPIQLHGTLWGFLG 276

Query: 385 MLYRSDRTCI-AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
                D          +  I                           +      +  R  
Sbjct: 277 FDSVRDPRSWTPIEEHVLNI--------------------------VSASLGAAIARRQA 310

Query: 444 KRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPV-EDILRKPFTVFL 501
           + ++      L +IL++    + + + +   IL  N+ +   FG     ++    F    
Sbjct: 311 QEELAGSNRTLLTILDSLPVDVYVADLKNYRILFMNQYMKDSFGRDCTGELCHTAFNHES 370

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDI 561
                   +  L E  +   +  +          +   +   +I              D+
Sbjct: 371 APCGHCTNSSLLDE--TGRPKGVIAWECFNPVTRKWYRNFDQVIPWTDGRLVRIEISMDL 428

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           S+ K+ + ++  A+ +AE  +  KS+FLA +SHEIRTPL  ++G  ++++  +  P+   
Sbjct: 429 SDRKRAEEEILRARDLAEAANCAKSEFLANMSHEIRTPLNGVMGMLQLLQLTKLDPV--- 485

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
              +Y +   +S N ++ ++ D+LD+S+IE+GK+++   P+ L E + +   L    A E
Sbjct: 486 -QEDYTDTAIQSCNRLVRLLTDILDLSRIEAGKLSIQSAPMELSEVLRQTGDLFSPTARE 544

Query: 682 KRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS-----NE 735
           K + +R      IP +IL D   ++Q+  N++ N++ FT SGG + +  +          
Sbjct: 545 KGLKLRFDVDPAIPSQILGDATRLQQVLSNMVGNSLKFTHSGG-VTVDASLLPSVHGGQC 603

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            V+  V DTG+G+ + +L    +PF Q+        +G GLGL + K +V    G   + 
Sbjct: 604 RVLFSVADTGIGIPDDKLGNLFQPFSQVTEGFTRSYQGAGLGLSICKRLVSFMGGNISVV 663

Query: 796 STPAKGTL--IEIIF 808
           S    GT     + F
Sbjct: 664 SELEVGTTMYFSVTF 678


>gi|283470959|emb|CAQ50170.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus ST398]
          Length = 546

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 85/398 (21%), Positives = 169/398 (42%), Gaps = 33/398 (8%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKR--KMEIEVMQLCSILEATSDGIAIINREGIIL 475
                          +   D+  R+ K   + +++  +L + +E     I +I+R G I+
Sbjct: 170 IRVPESNVVETKALFVSTNDLARRLQKLNNEQKMQSNRLKTTIENIPSAILMIDRNGKIV 229

Query: 476 STNRAVSKLFGYPVEDILRKPFTVF-LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
             N+A  + F                      + +   + E   ++     +     +  
Sbjct: 230 VANKAYYEQFNIT------HNIEQIGYHGYVNTEIEQLILESFKVEKPIYEQLEVAINQV 283

Query: 535 EEKLLSLRIIIKKLPFS---SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
             K   +  +              + MHDI+  KQ +              + + +F+A 
Sbjct: 284 HAKYFDISCVPILTRSQKSLQGILVVMHDITNLKQLE--------------NLRREFVAN 329

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKI 650
           VSHE++TP+T+I GF+E + +   G   +   ++ + N I +  N +  +V DLLD+S I
Sbjct: 330 VSHELKTPITSIKGFAETLID---GAKNDAESLDMFLNIILKESNRIESLVTDLLDLSHI 386

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710
           E     L  + ++L +     I  +   AN+K I I T    ++  + A    + Q+  N
Sbjct: 387 E-QHTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTDIEKDVI-VKAQESKIAQVITN 444

Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           +L+NAI+++   G I +   +  +  VI  V+D G+G+   + ++  + F ++  ++   
Sbjct: 445 LLTNAINYSYEDGDINVRV-YRDDFRVIFEVQDFGIGIKLEDQQRIFERFYRVDKARSRD 503

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
             GTGLGL + K +V+A+ G   + S   KG+  ++I 
Sbjct: 504 SGGTGLGLSITKHIVEAHQGNIEVNSQVGKGSTFKVIL 541


>gi|258424108|ref|ZP_05686990.1| multi-sensor signal transduction histidine kinase [Staphylococcus
           aureus A9635]
 gi|257845729|gb|EEV69761.1| multi-sensor signal transduction histidine kinase [Staphylococcus
           aureus A9635]
          Length = 554

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 85/398 (21%), Positives = 169/398 (42%), Gaps = 33/398 (8%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKR--KMEIEVMQLCSILEATSDGIAIINREGIIL 475
                          +   D+  R+ K   + +++  +L + +E     I +I+R G I+
Sbjct: 178 IRVPESNVVETKALFVSTNDLARRLQKLNNEQKMQSNRLKTTIENIPSAILMIDRNGKIV 237

Query: 476 STNRAVSKLFGYPVEDILRKPFTVF-LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
             N+A  + F                      + +   + E   ++     +     +  
Sbjct: 238 VANKAYYEQFNIT------HNIEQIGYHGYVNTEIEQLILESFKVEKPIYEQLEVAINQV 291

Query: 535 EEKLLSLRIIIKKLPFS---SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
             K   +  +              + MHDI+  KQ +              + + +F+A 
Sbjct: 292 HAKYFDISCVPILTRSQKSLQGILVVMHDITNLKQLE--------------NLRREFVAN 337

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKI 650
           VSHE++TP+T+I GF+E + +   G   +   ++ + N I +  N +  +V DLLD+S I
Sbjct: 338 VSHELKTPITSIKGFAETLID---GAKNDAESLDMFLNIILKESNRIESLVTDLLDLSHI 394

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710
           E     L  + ++L +     I  +   AN+K I I T    ++  + A    + Q+  N
Sbjct: 395 E-QHTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTDIEKDVI-VKAQESKIAQVITN 452

Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           +L+NAI+++   G I +   +  +  VI  V+D G+G+   + ++  + F ++  ++   
Sbjct: 453 LLTNAINYSYEDGDINVRV-YRDDFRVIFEVQDFGIGIKLEDQQRIFERFYRVDKARSRD 511

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
             GTGLGL + K +V+A+ G   + S   KG+  ++I 
Sbjct: 512 SGGTGLGLSITKHIVEAHQGNIEVNSQVGKGSTFKVIL 549


>gi|242373982|ref|ZP_04819556.1| histidine kinase [Staphylococcus epidermidis M23864:W1]
 gi|242348336|gb|EES39938.1| histidine kinase [Staphylococcus epidermidis M23864:W1]
          Length = 565

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 84/397 (21%), Positives = 177/397 (44%), Gaps = 31/397 (7%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEI--EVMQLCSILEATSDGIAIINREGIIL 475
                   +      +   ++  R+ K       +  +L + LE     + +I++ G I+
Sbjct: 191 VRVPESNVKETRALFVTTNELARRLQKLNNRQKIQSNRLKTTLENIPSSVLMIDKHGEIV 250

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
             N A  ++F  P + +  K +  FL+ +   ++          +     +     +   
Sbjct: 251 VANHAYYEVFS-PEQIVENKSYIGFLDDSIEKLIIESFR----TEKVIYDQIEVDINNVH 305

Query: 536 EKLLSLRIIIKKLPFS---SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
            K   +  +              + +HDI+  ++ +              + + +F+A V
Sbjct: 306 TKYFDVSCVPILSKSKKKLQGMVVVLHDITNLQKLE--------------NLRREFVANV 351

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIE 651
           SHE++TP+T+I GF+E +     G   + + +E + N I +  N +  +V DLLD+S IE
Sbjct: 352 SHELKTPITSIKGFAETLIE---GAKNDEQSLEMFLNIILKESNRIESLVMDLLDLSHIE 408

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
             +  +    ++L E     I  +Q  A  K I I++    ++  I A    V Q+  N+
Sbjct: 409 -QQNEIETSYMNLSELAYNTIDNLQTQATNKNIEIKSEIEKDVI-IEAHENKVAQVITNL 466

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           LSNAI+++    ++I+   +   ++V L ++D G+G++  + +   + F ++  ++    
Sbjct: 467 LSNAINYSLEDSKVIVRV-YREGKKVNLEIQDFGIGISAKDQKHIFERFYRVDKARSRDS 525

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            GTGLGL + K +V+A+ G+  + S P +G+  ++ F
Sbjct: 526 GGTGLGLSITKHIVEAHNGRISVSSKPGEGSTFKVTF 562


>gi|13472804|ref|NP_104371.1| two-component sensor/response regulator hybrid [Mesorhizobium loti
           MAFF303099]
 gi|14023551|dbj|BAB50157.1| two-component sensor/response regulator hybrid [Mesorhizobium loti
           MAFF303099]
          Length = 760

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 94/413 (22%), Positives = 173/413 (41%), Gaps = 14/413 (3%)

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
             +L +             +        E         +M+    +   +++A  D +  
Sbjct: 79  GLALHLHARRSVHRTVVLLDETTARSRAEIETLADRMWEMQESEERFRGLIDALGDLVIH 138

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
            +R+G I+  N+  + L      D+  K            V           +   + + 
Sbjct: 139 RDRDGYIVYANKVFADLVETDQRDLAGKTLAEL----GIEVGIVPDAAFSDHECLSSTDV 194

Query: 528 ITLGSTKEEKLLSLRIIIK-KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
                        + + ++ K   ++ +     DI+  K+ ++ L  A++ AE  S  KS
Sbjct: 195 AIRTPGGPRWFSWIELSVRDKDSGAASHRAIARDITARKRAESSLITARERAEYASQAKS 254

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
            FLA VSHEIRTP+  I+G + ++ +    P        Y   I  S + +L ++ DLLD
Sbjct: 255 RFLATVSHEIRTPMNGIMGMARLLADTSLSP----EQQTYVGAISTSASALLALIEDLLD 310

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVK 705
            SKIE+G+ +   +P+S+ E     I L+   A  K I +      ++P+ I AD   V+
Sbjct: 311 YSKIEAGRFDPEPQPMSVREIADNIIELLAARAFAKDIGLGCHVEPDVPQLITADPGRVR 370

Query: 706 QIALNILSNAIHFTPSGGQIIISTTH---TSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
           Q+ LN++ NAI FT  GG +++S       +++ +   + DTG G+   ++E+  + F Q
Sbjct: 371 QVLLNLIGNAIKFTDGGG-VLVSIARARSETSDRICFTITDTGPGLREEDMERIFEEFEQ 429

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
              +      G GLGL ++K +V A  G   + S   +G+      P  + + 
Sbjct: 430 ADGTSTRAHGGAGLGLAISKRLVAAMGGTISVSSRLGQGSEFVFEIPATEATE 482



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 38/422 (9%), Positives = 101/422 (23%), Gaps = 44/422 (10%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D  GY+   ++     +      + G  L ++   + I P+    D      +       
Sbjct: 140 DRDGYIVYANKVFADLVETDQRDLAGKTLAELGIEVGIVPDAAFSD--HECLSSTDVAIR 197

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
            P  G   +  I+L+   +  ++   +  R   I           +      ++  +  +
Sbjct: 198 TP-GGPRWFSWIELS---VRDKDSGAASHR--AIARDITARKRAESSLITARERAEYASQ 251

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
            K    +    +              + +   S  +                L  +    
Sbjct: 252 AKSRFLATVSHEIRTPMNGIMGMARLLADTSLSPEQQTYVGAISTSASALLALIEDLLDY 311

Query: 270 PEQEDFHTINLN-----QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
            + E             +         L   +      L     P +            +
Sbjct: 312 SKIEAGRFDPEPQPMSVREIADNIIELLAARAFAKDIGLGCHVEPDVPQLITADPGRVRQ 371

Query: 325 -TVDKCPIPFFVYSHGNLFYANPSFLLLT------KYKSVDDIEIAGGLSTLLDAPKLSD 377
             ++           G +  +       T                   +  + +  + +D
Sbjct: 372 VLLNLIGNAIKFTDGGGVLVSIARARSETSDRICFTITDTGPGLREEDMERIFEEFEQAD 431

Query: 378 NNAIKP-----VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
             + +      + L  S R   A    +       + S  +  IP  +A + P+      
Sbjct: 432 GTSTRAHGGAGLGLAISKRLVAAMGGTISVSSRLGQGSEFVFEIPATEATEAPQGRQNVL 491

Query: 433 IEPEDVDTRINKRKMEIEVMQLCS----------ILEATSDG----IAIINR-----EGI 473
                V    N  + +     + +          + +A        + +++      +G 
Sbjct: 492 AGRRAVILSRNAVEADAIARTIRANGGTAGIATTVAQAAPLAEGCDVLLVDAAMEESDGR 551

Query: 474 IL 475
           +L
Sbjct: 552 VL 553



 Score = 40.4 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 22/225 (9%), Positives = 52/225 (23%), Gaps = 19/225 (8%)

Query: 236 MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN 295
           +  +  +  E       V       L     + +          L       +     + 
Sbjct: 33  VPEQQLARREGLPLLTFVAIMVLAGLAHLTGAPIFISLALLATGLAGLALHLHARRSVHR 92

Query: 296 SKESFEYLSHRNHPSLSAYFD------EGENLTPETVDKCPIPFFV-YSHGNLFYANPSF 348
           +    +  + R+   +    D      E E      +D            G + YAN  F
Sbjct: 93  TVVLLDETTARSRAEIETLADRMWEMQESEERFRGLIDALGDLVIHRDRDGYIVYANKVF 152

Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
             L +     D+         ++   + D        L  +D            I+    
Sbjct: 153 ADLVE-TDQRDLAGKTLAELGIEVGIVPDAAFSDHECLSSTD----------VAIRTPGG 201

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
                ++I     ++         I  +    +  +  +     +
Sbjct: 202 P-RWFSWIELSVRDKDSGAASHRAIARDITARKRAESSLITARER 245


>gi|330816290|ref|YP_004359995.1| hypothetical protein bgla_1g13650 [Burkholderia gladioli BSR3]
 gi|327368683|gb|AEA60039.1| hypothetical protein bgla_1g13650 [Burkholderia gladioli BSR3]
          Length = 779

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 111/522 (21%), Positives = 194/522 (37%), Gaps = 30/522 (5%)

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEI 362
           +   + +L             T+        V    G L Y NP    LT ++S      
Sbjct: 111 ARLTNETLRRREAAARQHYEITLASLTQGVMVIDPLGRLTYLNPVAAALTGHQSASAHGK 170

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI-AASARLHTIQWNRENSLAMTFIPF-EK 420
                 +         ++    +          A ++ LH +Q   + +     +     
Sbjct: 171 P--FHEIFHGYDSHGVSSRVAALERVLAGAEDGAGTSELHWLQPAGQAARVPVAVVVSPL 228

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
            +          +  +       + +  +    L  +++A+ D I  +  +  I S N A
Sbjct: 229 RDPDGGRGGAVAVLRDVS----AEHERALANGMLRRLVDASPDAIIGVGADRRITSWNPA 284

Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
             ++FGYP  D L +   + +      +  H +   +            L    + K   
Sbjct: 285 AQRMFGYPEADALGRDIDMLVAP--RWLGRHPIATEVGEVREAIGGLDVLCLGGDGKRFR 342

Query: 541 LRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHA-------KKIAEKESSHKSDFL 589
           + +    +       +    T+ D    ++ + +  H        ++ A+  +  K + L
Sbjct: 343 VTLAASPVFDEQQRCVALSLTLRDTRAQRRRERRNHHRLRGARDARRQADTSNRLKDELL 402

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
           A VSHE+RTPL  I G+ EV++N   G L      +  + IDRS   +  +V D+LD S 
Sbjct: 403 AIVSHELRTPLNVIYGWVEVMRNPIDGAL----QRQAIDAIDRSARSLSRMVADILDASS 458

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709
           + +GK+ L   PV L   V +        A    I + T  A     +  D   +KQ+  
Sbjct: 459 LATGKLRLDPMPVDLVRVVGDVAGSFGTTAGHDGITLETHCALEACVVSGDAERLKQMLS 518

Query: 710 NILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
           N+LSNA  FTP GG++ I  T      V+L V DTG G+    L    + F +  NS   
Sbjct: 519 NLLSNAFKFTPRGGRVTIGLT-RDEARVLLTVTDTGQGVVADFLPHVFEAFRRAENSPAS 577

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAK--GTLIEIIFP 809
              G GLGL + + + + + G   + S   +  GT  E+  P
Sbjct: 578 PKRGLGLGLSIVRHIAELHGGAVRVASA-GRDLGTTFEVALP 618



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 21/223 (9%), Positives = 61/223 (27%), Gaps = 6/223 (2%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           + A   +   +    +  G      +G  +  +     +  +    ++ + +    G   
Sbjct: 272 VGADRRITSWNPAAQRMFGYPEADALGRDIDMLVAPRWLGRHPIATEVGEVREAIGGLDV 331

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
              + G      + LAA P++   +     R   +    R     R   +R   +     
Sbjct: 332 -LCLGGDGKRFRVTLAASPVFDEQQ-----RCVALSLTLRDTRAQRRRERRNHHRLRGAR 385

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           + ++   +  + K ++ +  S      +      +       D  L+ +    +     S
Sbjct: 386 DARRQADTSNRLKDELLAIVSHELRTPLNVIYGWVEVMRNPIDGALQRQAIDAIDRSARS 445

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
           L           +  T K     +  +       ++     + 
Sbjct: 446 LSRMVADILDASSLATGKLRLDPMPVDLVRVVGDVAGSFGTTA 488



 Score = 55.4 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/381 (7%), Positives = 87/381 (22%), Gaps = 25/381 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR-----QNTW 143
           ID  G L  ++       G+ +    G    ++         +     L+R     ++  
Sbjct: 143 IDPLGRLTYLNPVAAALTGHQSASAHGKPFHEIFHGYDSHGVSSRVAALERVLAGAEDGA 202

Query: 144 YGKTTLWP-IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
                 W    G    VP+ +   P+   +    G     ++     +++       L +
Sbjct: 203 GTSELHWLQPAGQAARVPVAVVVSPLRDPDGGRGGA--VAVLRDVSAEHERALANGMLRR 260

Query: 203 KFSHLHE------IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256
                 +        +  +S       +F         R  + + +      H       
Sbjct: 261 LVDASPDAIIGVGADRRITSWNPAAQRMFGYPEADALGRDIDMLVAPRWLGRHPIATEVG 320

Query: 257 EKYPL--------LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
           E            L  +            +   Q        TL++   +      + + 
Sbjct: 321 EVREAIGGLDVLCLGGDGKRFRVTLAASPVFDEQQRCVALSLTLRDTRAQRRRERRNHHR 380

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEI--AGGL 366
              +       + +    D+  +    +           ++ + +      ++      +
Sbjct: 381 LRGARDARRQADTSNRLKDEL-LAIVSHELRTPLNVIYGWVEVMRNPIDGALQRQAIDAI 439

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
                +      + +    L             L  +  +   S   T        +   
Sbjct: 440 DRSARSLSRMVADILDASSLATGKLRLDPMPVDLVRVVGDVAGSFGTTAGHDGITLETHC 499

Query: 427 NMPQNGIEPEDVDTRINKRKM 447
            +    +  +    +     +
Sbjct: 500 ALEACVVSGDAERLKQMLSNL 520



 Score = 55.0 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 29/270 (10%), Positives = 63/270 (23%), Gaps = 27/270 (10%)

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
            + +     GH S                   + ++V++L    A  +D   T +   L 
Sbjct: 152 LNPVAAALTGHQSASAHGKPFHEIFHGYDSHGVSSRVAALERVLAGAEDGAGTSELHWLQ 211

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
                             +         L++        ++     S          +  
Sbjct: 212 PAG------------QAARVPVAVVVSPLRDPDGGRGGAVAVLRDVSAEHERALANGMLR 259

Query: 324 ETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
             VD  P           +   NP+   +  Y   D +     +  L+    L  +    
Sbjct: 260 RLVDASPDAIIGVGADRRITSWNPAAQRMFGYPEADALGR--DIDMLVAPRWLGRHPIAT 317

Query: 383 PVMLYR------------SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
            V   R             D      +     +   ++  +A++    +   Q       
Sbjct: 318 EVGEVREAIGGLDVLCLGGDGKRFRVTLAASPVFDEQQRCVALSLTLRDTRAQRRRERRN 377

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
           +       D R           +L +I+  
Sbjct: 378 HHRLRGARDARRQADTSNRLKDELLAIVSH 407


>gi|218233257|ref|YP_002367829.1| sporulation kinase [Bacillus cereus B4264]
 gi|218161214|gb|ACK61206.1| sporulation kinase [Bacillus cereus B4264]
          Length = 801

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 103/532 (19%), Positives = 211/532 (39%), Gaps = 47/532 (8%)

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVD-----KCPIPFFVYSHGNLFYANPSFLLL 351
            +  E +      +     +   + T E ++                G++  AN ++  +
Sbjct: 294 GQVIEVVGSTVDITERKKVESELSATKELLESFIKHNLDAITISDREGHILQANKAYEKI 353

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ-WNRENS 410
             + S + I            P + D    + +   +   T  +   RL T++  +  + 
Sbjct: 354 FGWSSQEIIGKRL--------PCVPDFLMEESLKNIQKILTGESVVTRLETVRQRSDGSL 405

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK-------MEIEVMQLCSILEATSD 463
           L ++       +     +  + I  +  + +  +R+       +    M+  +++E  +D
Sbjct: 406 LDVSLTVSPILDVRGNVIALSAICRDISERKQAERERHRLHQQLRDSEMKYRALIEQATD 465

Query: 464 GIAI--INREG---IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
            + +  +N +      +  N    + FGY  E++L   F+  + Q++  ++   L +I  
Sbjct: 466 AVYVVELNEDNAPSRFIEVNPVGCRRFGYSREELLSLSFSNIVPQDSQIIVR-LLEKIKK 524

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578
                TL+   +  T +       + +  L     +     DI+E  + +  L  ++K+A
Sbjct: 525 GQTSFTLQDEYVFPTGKVITTEFSVRVFNLNGKKVFLSISRDITERLKTEELLRKSEKLA 584

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
                        ++HEI  PLTA+ GF +++K+       N     Y N +      + 
Sbjct: 585 VV-----GQLATVMAHEINNPLTAMKGFMQLLKSTE-----NENNQGYINIVSSEIERIE 634

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
            I  + + ++K +  K+  +     +   + + + L+Q  A    I IR      IP I 
Sbjct: 635 SITTEFMAVAKPQVVKIKPN----DISVLMDQVLMLLQPQAMMNNIKIRIDLNPGIPLIS 690

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
            +   +KQ+ +NIL NAI   P GG+I+I      N +V +R  D G G+    +    +
Sbjct: 691 CEGNQLKQVFVNILKNAIESMPMGGEILIQLNILDNNQVSIRFIDQGCGIPKERIPYLGE 750

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           PF        I+ EG GLGL +   +++ + GK +I S   KGT +E+  P+
Sbjct: 751 PFY------SIKEEGIGLGLMICYKIIETHQGKVFIESEVNKGTTVEVTLPI 796



 Score =  108 bits (269), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 44/286 (15%), Positives = 91/286 (31%), Gaps = 21/286 (7%)

Query: 313 AYFDEGENLTPETVDKCPIPFF----VYSHGNLFYANPSFLLLTKYKSVDDIEI-AGGLS 367
               + +    +TV +     F    V  H      +  F     + S   +      + 
Sbjct: 186 RELKKSKQELADTVHELQGGIFKFKKVGKHFIHTLCDGQFYYQNGFYSEQVVGKSLRTID 245

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
             +  P L          L   +   I        + W  + ++ +         +  + 
Sbjct: 246 ASIVPPHLVPQLMKY--YLQAWEGKEIIFE-----LPWPNDKTIILI--ALRPIKRNGQV 296

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
           +   G   +  + +  + ++      L S ++   D I I +REG IL  N+A  K+FG+
Sbjct: 297 IEVVGSTVDITERKKVESELSATKELLESFIKHNLDAITISDREGHILQANKAYEKIFGW 356

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
             ++I+ K     +           + +IL           T+    +  LL + + +  
Sbjct: 357 SSQEIIGKRL-PCVPDFLMEESLKNIQKIL-TGESVVTRLETVRQRSDGSLLDVSLTVSP 414

Query: 548 LPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
           +               DISE KQ + +     +   ++S  K   L
Sbjct: 415 ILDVRGNVIALSAICRDISERKQAERERHRLHQQL-RDSEMKYRAL 459



 Score = 61.2 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 38/286 (13%), Positives = 84/286 (29%), Gaps = 23/286 (8%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG-KTT 148
           D  G++ + ++   K  G  + ++IG RL  V D L  +   +I  +L  ++     +T 
Sbjct: 338 DREGHILQANKAYEKIFGWSSQEIIGKRLPCVPDFLMEESLKNIQKILTGESVVTRLETV 397

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +G+ L V + ++  PI              I               RL ++     
Sbjct: 398 RQRSDGSLLDVSLTVS--PILDVRGNVIALS--AICRDISERKQAERERHRLHQQLRDSE 453

Query: 209 EIKKGHSSVEKEKYDIFSQQS-----------PPPHLR---MKNKVSSLTEY-YAHKDDV 253
              +       +   +                P    R    + ++ SL+      +D  
Sbjct: 454 MKYRALIEQATDAVYVVELNEDNAPSRFIEVNPVGCRRFGYSREELLSLSFSNIVPQDSQ 513

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
           +       +   ++S   Q+++        T +               +LS     +   
Sbjct: 514 IIVRLLEKIKKGQTSFTLQDEYVFPTGKVITTEFSVRVFN--LNGKKVFLSISRDITERL 571

Query: 314 YFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVD 358
             +E    + +      +     +   N   A   F+ L K    +
Sbjct: 572 KTEELLRKSEKLAVVGQLATVMAHEINNPLTAMKGFMQLLKSTENE 617


>gi|148270267|ref|YP_001244727.1| PAS/PAC sensor signal transduction histidine kinase [Thermotoga
           petrophila RKU-1]
 gi|147735811|gb|ABQ47151.1| PAS/PAC sensor signal transduction histidine kinase [Thermotoga
           petrophila RKU-1]
          Length = 412

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 81/413 (19%), Positives = 173/413 (41%), Gaps = 29/413 (7%)

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
             + +                  P       ++    + +    ++E+      +IL + 
Sbjct: 21  RKRLSEYRIFIEKLSDMLGEKDVPPLYLFERLKKYVDNLKETISRVEVSRDNFLTILNSL 80

Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
           S+ I I++REG I   N    +L      +   +P+    E      ++  + E +  + 
Sbjct: 81  SEPIFILDREGKITFLNEIARELVQ-GRINPEGRPYYEIFEDYY---ISEMVEETIKSEE 136

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLP-FSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
            Q           E+K   +++I  +L      + +  HD+++ ++              
Sbjct: 137 PQEGTL-VTYVGNEKKYFHVKVIPVELKSGDKIFVILFHDVTKERKLDE----------- 184

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
               + +F+A VSHE+RTPLT+I G++E +               +   I+     +  +
Sbjct: 185 ---MRREFIATVSHELRTPLTSIHGYAETLLEDDL--EDKELVKRFLKIIEEESARMTRL 239

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILAD 700
           +NDLLD+ K+E  ++N   + V L E +     ++Q  A E  + +     + +  +  +
Sbjct: 240 INDLLDLEKMEESEVNFEMKDVDLCEVIEYVYKIIQPIAEENEVDLVVECEDVV--VRGN 297

Query: 701 LRSVKQIALNILSNAIHFT---PSG-GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKA 756
              + Q+ LN++ NA+ +T     G  ++ +   + + + V+L V DTG G+      + 
Sbjct: 298 KERLIQMLLNLVDNAVKYTSLKEKGEKKVWVR-AYDTPDWVVLEVEDTGPGIPKEAQSRI 356

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            + F ++  ++  +  GTGLGL + K +VD + G+  + S   +GT++ +  P
Sbjct: 357 FEKFYRVDKARSRKMGGTGLGLTIVKTIVDKHGGRIEVESEINQGTVMRVFLP 409


>gi|281356981|ref|ZP_06243471.1| multi-sensor hybrid histidine kinase [Victivallis vadensis ATCC
            BAA-548]
 gi|281316539|gb|EFB00563.1| multi-sensor hybrid histidine kinase [Victivallis vadensis ATCC
            BAA-548]
          Length = 1816

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 133/779 (17%), Positives = 252/779 (32%), Gaps = 75/779 (9%)

Query: 92   HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLW 150
                   S      +G    K+IG    D+  I             + +  +      L 
Sbjct: 896  EDRYLFASRTCIDALGTEREKLIGRTDFDIMPIEQAKKFQADDAQAMHQGGSQIIIEELP 955

Query: 151  PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
               G   ++ +    + ++  +       G G+        + R   K+ ++    + + 
Sbjct: 956  RPGGR--FIRLQTRKVRLHRESGN-DLLLGIGV--DITELTENRNELKKSNELLHAIMDN 1010

Query: 211  KKGHSSVEKEKYD-----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
                  V+   ++          +    L  +  +          ++     +      E
Sbjct: 1011 LPCALFVKDADHEFRYLMYNRVFAEAFGLTGREVIGRCDPELLLPENARLCGESDRAALE 1070

Query: 266  ESSLPE-QEDFHTINLNQYTKKQYFGTLQNNSKES------------------------- 299
               + +  E+    + +++  +   G + +                              
Sbjct: 1071 AGGVSDFHEEVILADGHRHALRCIKGVVTHEDGRRLLLGISMDVTKEQELVGELQVYGAQ 1130

Query: 300  -----FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPS------- 347
                     S        +   E      E  D      F   +      N         
Sbjct: 1131 QRALNAALESILLSEDFPSAIREVLRQIGEQADADRCYIFSRDYEKQCSCNEFEWTAPGI 1190

Query: 348  FLLLTKYKSVDDIEIAGGLSTL----------LDAPKLSDNNAIKPVMLYRSDRTCIAAS 397
               +   + +  I      + L          LDAP            L R     I  +
Sbjct: 1191 AAEIDTLQDLPLILSPAWEAALQNREVIFSADLDAPDQCAAVREGYETLSRQQIRSILVT 1250

Query: 398  ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED-VDTRINKRKMEIEVMQLCS 456
                                        + +       E  +  ++ ++++E    +   
Sbjct: 1251 GIWLNGTLWGFIGFDYVRKLIPYPEIAEKMLTATARLIEIALIRKVRQQELERSEYEKKL 1310

Query: 457  ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV--FLEQNTPSVMNHYLT 514
            I++     I + + E  +L  N A  ++          +                N  + 
Sbjct: 1311 IMDTIKTPIILYDGEMNLLRANNAAQRIALIDPAAAAAEHIPCNRIFCGEENCPSNCPVR 1370

Query: 515  EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL-TMHDISEWKQEKNKLSH 573
            + L        E    G         +      L     Y L TM DI+E+ Q + KL+ 
Sbjct: 1371 QSLDDHAEHCCEMHIRGKD-----FLITANPILLDGRLAYVLKTMLDITEFNQIQQKLTR 1425

Query: 574  AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
            A   A+  S  KS FLA +SHE+RTPL A+IGFSE++   R   L      EY   I+ +
Sbjct: 1426 AVLDAQNASKAKSYFLATMSHELRTPLNAVIGFSELL---RNDTLPRSEQNEYLQSINFA 1482

Query: 634  GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693
            GN +L ++ND+LD+SKIE+G++ +  E         E  S+ +L A EK++         
Sbjct: 1483 GNALLKLINDILDLSKIEAGQIVITPERNDFQALCREIYSIFRLQAAEKKLEFTLECDPE 1542

Query: 694  IPRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHT--SNEEVILRVRDTGVGMTN 750
            +P +  D   ++QI LN+  NA+ FT +G  +I+I           + +RV DTG+G++ 
Sbjct: 1543 LPYLYLDNLRLRQILLNLTGNAMKFTKAGSIRIVIDFRPESDEAGTLTIRVIDTGIGISE 1602

Query: 751  YELEKAMKPFGQIPNSQ-QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
               +   +PF Q    +     +GTGLGL ++  ++    G+  + S   +G+   +I 
Sbjct: 1603 QGQKTIFEPFVQDHEVRGSHAYQGTGLGLTISSRLIGQMGGRMALDSKVGEGSCFTVIL 1661



 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 59/529 (11%), Positives = 144/529 (27%), Gaps = 35/529 (6%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNH---IGDLLKRQN--T 142
             DA   +  +++      G    +  G +L D+ + + ++D +     +   L+ +   T
Sbjct: 512  TDAKERVTLLNQVSADLTGFSPQEAAGKKLEDIFNIVSYVDQSPVSSPLRKALQTREIVT 571

Query: 143  WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVD-NDPRALGKRLD 201
                T L   +GT  +  I  +A PI  RN   +G     +      +      L  +  
Sbjct: 572  LANHTDLIAKDGTRRH--IADSAAPIIDRNGVLAGA--VLVFRDVTAEYERRDRLHVQKA 627

Query: 202  KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
                 L   +      ++ +  + +        R           Y      L+  +  L
Sbjct: 628  VLEKALTAGEMTFFRCDENREFLQAANEAFWPRRDGKPQKVEEWIYPGDLPELQNCREEL 687

Query: 262  LTSEESSLPEQEDFHTINLNQ---YTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
             + +     +          +            +    +                 +   
Sbjct: 688  FSGKRREFRQLYRLQKAEKFRYYEILMFDDISPVSEKKEFFGIIRDVTGFRERELGYRNT 747

Query: 319  ENLTPETVDKCPIPFF---VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
              L  + +D  P   +   +         +    LL   K  + +            P+ 
Sbjct: 748  SALLHDVLDNIPGYIWVKEIEQGLRHLMVSRKVGLLVGQKENELVGK---TDAEFLPPES 804

Query: 376  SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
            ++             R+ +  +           N+  +  +    A      +   GI  
Sbjct: 805  AEQFRRADAAALAEGRSEVTITLTDRF-----GNAHDLKVVQTVLARPDGTRLL-LGIGV 858

Query: 436  EDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN--REGIILSTNRAVSKLFGYPVEDIL 493
            +       + ++  +   L  I +     + I +   E   L  +R      G   E ++
Sbjct: 859  DITRELKMEAQLHEKNRLLEDIFDNLPTPLFIKDFYNEDRYLFASRTCIDALGTEREKLI 918

Query: 494  RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553
             +     +             + +     Q + +         + + L+    +L   S 
Sbjct: 919  GRTDFDIMPIEQAKKFQADDAQAMHQGGSQIIIEEL--PRPGGRFIRLQTRKVRLHRESG 976

Query: 554  ---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHK--SDFLARVSHEIR 597
                     DI+E  + +N+L  + ++      +   + F+    HE R
Sbjct: 977  NDLLLGIGVDITELTENRNELKKSNELLHAIMDNLPCALFVKDADHEFR 1025



 Score =  115 bits (287), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 39/425 (9%), Positives = 110/425 (25%), Gaps = 26/425 (6%)

Query: 181  FGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSV--EKEKYDIFSQQSPPPHL--RM 236
            FGI+       +     +        + +   G+  V   ++             L  + 
Sbjct: 728  FGIIRDVTGFRERELGYRNTSALLHDVLDNIPGYIWVKEIEQGLRHLMVSRKVGLLVGQK 787

Query: 237  KNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY----TKKQYFGTL 292
            +N++   T+      +  +  +     +      E     T            +      
Sbjct: 788  ENELVGKTDAEFLPPESAEQFRRADAAALAEGRSEVTITLTDRFGNAHDLKVVQTVLARP 847

Query: 293  QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV---YSHGNLFYANPSFL 349
                      +       + A   E   L  +  D  P P F+   Y+     +A+ + +
Sbjct: 848  DGTRLLLGIGVDITRELKMEAQLHEKNRLLEDIFDNLPTPLFIKDFYNEDRYLFASRTCI 907

Query: 350  LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
                 +    I         +   + +               + I        +      
Sbjct: 908  DALGTEREKLIGR---TDFDIMPIEQAKKFQADDAQAMHQGGSQIIIE----ELPRPGGR 960

Query: 410  SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469
             + +         +   ++   GI  +  +   N+ +++     L +I++     + + +
Sbjct: 961  FIRLQTRKVRLHRESGNDLL-LGIGVDITELTENRNELKKSNELLHAIMDNLPCALFVKD 1019

Query: 470  REG--IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
             +     L  NR  ++ FG    +++ +     L      +        L         +
Sbjct: 1020 ADHEFRYLMYNRVFAEAFGLTGREVIGRCDPELLLPENARLCGESDRAALEAGGVSDFHE 1079

Query: 528  ITLGSTKEEKLLSLRIIIKKLPFSSC---YSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
              +    +    +LR I   +              D+++ ++   +L          ++ 
Sbjct: 1080 EVIL--ADGHRHALRCIKGVVTHEDGRRLLLGISMDVTKEQELVGELQVYGAQQRALNAA 1137

Query: 585  KSDFL 589
                L
Sbjct: 1138 LESIL 1142



 Score = 91.2 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 36/347 (10%), Positives = 85/347 (24%), Gaps = 17/347 (4%)

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
                 L      + P       +   Q    +       +S          N P   + 
Sbjct: 289 ARTGELLQQVLRGASPSSLPIREMETEQRFDHRKLQAFGISSSRLPSGSVVLNRPPSFSR 348

Query: 315 FDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
                 L    V    +   +         N     +        + +      L     
Sbjct: 349 KYADILLPGSMVLGGLLLGLLAWALLRNRYNRRMRAIFDASPARLMVVDATGKVLFARTG 408

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM------ 428
             D    + + L R  +                   L++ +       +  +        
Sbjct: 409 DQDPFRDELLTLRRIFKEEFTVLWESSQQVLKTGEPLSVNYPGLGGRLRRADFRKLPREV 468

Query: 429 ----PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
                      +  +    + K +    Q+   LE+  DG+ + + +  +   N+  + L
Sbjct: 469 FGTEAVLWASLDIEELHRLRLKYQETAEQMRLTLESIGDGVIVTDAKERVTLLNQVSADL 528

Query: 485 FGYPVEDILRKPFTVFL---EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
            G+  ++   K              S ++  L + L      TL   T    K+     +
Sbjct: 529 TGFSPQEAAGKKLEDIFNIVSYVDQSPVSSPLRKALQTREIVTLANHTDLIAKDGTRRHI 588

Query: 542 RIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSH 584
                 +   +           D++   + +++L   K + EK  + 
Sbjct: 589 ADSAAPIIDRNGVLAGAVLVFRDVTAEYERRDRLHVQKAVLEKALTA 635



 Score = 47.3 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 41/442 (9%), Positives = 90/442 (20%), Gaps = 67/442 (15%)

Query: 85   FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTW 143
            F  + D        +    +  G    ++IG    ++    +           L+     
Sbjct: 1016 FVKDADHEFRYLMYNRVFAEAFGLTGREVIGRCDPELLLPENARLCGESDRAALEAGGVS 1075

Query: 144  YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSG----------FRGFGIVHVN--RVDN 191
                 +   +G    +      +      R   G            G   V+    R  N
Sbjct: 1076 DFHEEVILADGHRHALRCIKGVVTHEDGRRLLLGISMDVTKEQELVGELQVYGAQQRALN 1135

Query: 192  DPRALGKRLDKKFSHLHEIKKGHSSVEKEKY----------------------------- 222
                     +   S + E+ +                                       
Sbjct: 1136 AALESILLSEDFPSAIREVLRQIGEQADADRCYIFSRDYEKQCSCNEFEWTAPGIAAEID 1195

Query: 223  ---DIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTIN 279
               D+    SP     ++N+    +      D      +     S +           +N
Sbjct: 1196 TLQDLPLILSPAWEAALQNREVIFSADLDAPDQCAAVREGYETLSRQQIRSILVTGIWLN 1255

Query: 280  LN------------QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
                               +    +   +    E    R          E E      +D
Sbjct: 1256 GTLWGFIGFDYVRKLIPYPEIAEKMLTATARLIEIALIRKVRQQELERSEYEKKL--IMD 1313

Query: 328  KCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
                P  +Y    NL  AN +   +               + +    +   +N      L
Sbjct: 1314 TIKTPIILYDGEMNLLRANNAAQRIALIDPAAAAAEHIPCNRIFCGEENCPSNCPVRQSL 1373

Query: 387  YRSDRTCIAASAR-------LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
                  C     R        + I  +   +  +  +         +      +      
Sbjct: 1374 DDHAEHCCEMHIRGKDFLITANPILLDGRLAYVLKTMLDITEFNQIQQKLTRAVLDAQNA 1433

Query: 440  TRINKRKMEIEVMQLCSILEAT 461
            ++     +     +L + L A 
Sbjct: 1434 SKAKSYFLATMSHELRTPLNAV 1455


>gi|86141300|ref|ZP_01059846.1| multi-sensor hybrid histidine kinase [Leeuwenhoekiella blandensis
           MED217]
 gi|85831859|gb|EAQ50314.1| multi-sensor hybrid histidine kinase [Leeuwenhoekiella blandensis
           MED217]
          Length = 906

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 97/361 (26%), Positives = 160/361 (44%), Gaps = 16/361 (4%)

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           +LE   DG  + + +G I   N   + +FG   ++++       L Q+  S     ++ +
Sbjct: 265 VLENLLDGYILFDAQGTIKDCNTLSTNIFGLSKKELIGSSIYALLPQDVTSAFKSDISSL 324

Query: 517 LSLDLRQTL--EKITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKNKLS 572
               L + L   K      K+  +    I            +S+ + DI++         
Sbjct: 325 HQNKLPKLLGNRKEVDLKNKKGNIEPYEISFSNNYSEPVETFSIFIRDITQRNDTLRA-- 382

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
             K  AE+ +  KS FL+ +SHEIRTPL  I+G SE++              +    I  
Sbjct: 383 --KASAERAAEAKSTFLSNMSHEIRTPLNVILGLSELLIKNGLD--DKKLLEKNLEGISF 438

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
           S   +L IV+D+LD SKIE+GK++L     +L E +S   S  ++ A EK + + T+   
Sbjct: 439 SAKNLLSIVDDILDFSKIEAGKLSLQALDFNLKEVLSNLTSTFEIKAREKGLQLITTIDE 498

Query: 693 NIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTH----TSNEEVILRVRDTGVG 747
            IP I + D   + QI  N++ NAI FT  G +I +        T    +   V DTG+G
Sbjct: 499 RIPDIIVGDQYRLNQIITNLIGNAIKFTKQG-KITLELQLIEETTDKVTINFIVTDTGIG 557

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           +   +L    K F Q+   +  +  GTGLGL +   +++   G  ++ S P KG+     
Sbjct: 558 IPKNQLPHIFKSFYQVDEPEHAKINGTGLGLSITHELINLQGGSLFVESEPGKGSSFHFK 617

Query: 808 F 808
            
Sbjct: 618 L 618


>gi|312888984|ref|ZP_07748544.1| PAS/PAC sensor signal transduction histidine kinase
           [Mucilaginibacter paludis DSM 18603]
 gi|311298502|gb|EFQ75611.1| PAS/PAC sensor signal transduction histidine kinase
           [Mucilaginibacter paludis DSM 18603]
          Length = 621

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 99/634 (15%), Positives = 216/634 (34%), Gaps = 41/634 (6%)

Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL--TEYYAHKDD 252
                 +++F  L              + +  Q      L   ++  +   T+Y    D 
Sbjct: 13  QTIATNEERFRALVTATADIVYSMSADWRVMRQLDGRGFLLDTHEPIANWITKYVHPDDY 72

Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
                        +     +      +            + +++ +  E+    +  +  
Sbjct: 73  EKVKTTIREAIEAKKIFELEHRVLRADGTPGWTLSRAVPILDSNGKIVEWFGAASDITQR 132

Query: 313 AYFDEGEN-----------LTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDI 360
              +E              L        P   +V+       YAN + L +      D I
Sbjct: 133 KSAEEALREAKEQSEQQKRLYETITSSTPDLIYVFDQDYRFTYANGALLSMWGKSWDDAI 192

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
              G L    +      ++     +           S    T+           F P   
Sbjct: 193 -GKGLLDNGYEPWHAEMHHREIDQVKTTKQPIRGEVSFPHATL---GRRIYDYIFTPVIN 248

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
                E     G   +  D R  +  +     +  ++ ++T   I++ N  G I+  N A
Sbjct: 249 EYGEVEA--VAGTTRDITDIRNAEIAISESEARFRTMADSTDVMISVGNESGSIIYFNEA 306

Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
            +++ G     +L+  +   +       +    +  L        E     S  + + L 
Sbjct: 307 WARVTGRTTTQLLKDGWFDLIHAEDKEAVIKNFSTSLLEKKPWQWEFRIPDSQNKYRWLL 366

Query: 541 LRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
            R   +     S   Y  +  DI+E K+ + +              K+ F++ VSHE++T
Sbjct: 367 SRGAPRFRSDGSFAGYISSTVDITEIKENEQR--------------KNAFISMVSHELKT 412

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
           PLT+ I + +V   ++     +           +    +  ++N  L++S++ESGK+ + 
Sbjct: 413 PLTSAISYIQV-SQKKALTYDDTLTSGMLERAAKQLGKMTSMINGFLNLSRLESGKIYID 471

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718
            +   +   + EA        +   ++        +  + AD   + Q+  N++SNA+ +
Sbjct: 472 RQRFDISLLMREAEEESLASISSHHLVFE---PATVSWVNADREKISQVINNLISNAVKY 528

Query: 719 TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
           +P+G  I +S T T+N+ + + V D G+G++  +L +  + + +   +      G G+GL
Sbjct: 529 SPAGSTIRLSCT-TANDMMQVSVADDGMGISQEDLPRLFERYYRAKGNATRHIAGFGIGL 587

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
            L   ++  + G+ +  S P KG+      P+  
Sbjct: 588 YLCCEIIKGHGGEIWAESEPGKGSKFSFTIPIVR 621



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/250 (11%), Positives = 57/250 (22%), Gaps = 10/250 (4%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP--NNHIGDLLKRQNT 142
             +  D        +  L    G      IG  L D           +  I  +   +  
Sbjct: 163 LIYVFDQDYRFTYANGALLSMWGKSWDDAIGKGLLDNGYEPWHAEMHHREIDQVKTTKQP 222

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
             G+ +      T      D    P+ +   E     G           +        + 
Sbjct: 223 IRGEVSF--PHATLGRRIYDYIFTPVINEYGEVEAVAG--TTRDITDIRNAEIAISESEA 278

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL--RMKNKVSSLTEYYAHKDDVLKTEKYP 260
           +F  + +      SV  E   I         +  R   ++     +     +  +     
Sbjct: 279 RFRTMADSTDVMISVGNESGSIIYFNEAWARVTGRTTTQLLKDGWFDLIHAEDKEAVIKN 338

Query: 261 LLTSEESSLPEQEDFHTINLN--QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
             TS     P Q +F   +                 +      Y+S     +     ++ 
Sbjct: 339 FSTSLLEKKPWQWEFRIPDSQNKYRWLLSRGAPRFRSDGSFAGYISSTVDITEIKENEQR 398

Query: 319 ENLTPETVDK 328
           +N     V  
Sbjct: 399 KNAFISMVSH 408


>gi|222099707|ref|YP_002534275.1| Sensor protein [Thermotoga neapolitana DSM 4359]
 gi|221572097|gb|ACM22909.1| Sensor protein [Thermotoga neapolitana DSM 4359]
          Length = 412

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 80/400 (20%), Positives = 167/400 (41%), Gaps = 29/400 (7%)

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII 474
                     P       ++    + +    ++E+      +IL + S+ I I++REG I
Sbjct: 34  VADMLGEKDVPPLYLFERLKKYIDNLKDRIARVEVSRDNFLTILNSLSEPIFILDREGNI 93

Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
              N A  +L    +    R+ + +F +     ++   +  +   +              
Sbjct: 94  TFLNEAARRLVQDRISPEGRRYYEIFEDYYINEMVEETIKSLEPQEGTL-----VTYIEN 148

Query: 535 EEKLLSLRIIIKKLP-FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
           ++K   +++I   L      + +  HD+++ ++                  + +F+A VS
Sbjct: 149 DKKYFHVKVIPVDLKSGDKIFVILFHDVTKERKLDE--------------MRREFIATVS 194

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HE+RTPLT+I G++E +               +   I+     +  ++NDLLD+ K+E  
Sbjct: 195 HELRTPLTSIHGYAETLLEDDL--ENKELVKRFLKIIEEESARMTHLINDLLDLEKMEES 252

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713
            +    + + L E V     +VQ  A E  + +     N    +  +   + Q+ LN++ 
Sbjct: 253 SVEFEMKELDLCEVVDYVYRIVQPIAEENEVELEIDCEN--VTVKGNKERLIQMLLNLVD 310

Query: 714 NAIHFT---PSG-GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
           NA+ +T     G  ++ +   + + +  ++ V DTG G+      +  + F ++  ++  
Sbjct: 311 NAVKYTSLKEKGEKKVWVR-AYDTPDWAVIEVEDTGPGIPKEAQSRIFEKFFRVDKARSR 369

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +  GTGLGL + K +VD + GK  + S   +GTL+ +  P
Sbjct: 370 KMGGTGLGLTIVKTIVDRHGGKIEVESEVGQGTLMRVYLP 409


>gi|197117193|ref|YP_002137620.1| PAS domain-containing sensor histidine kinase response regulator
           [Geobacter bemidjiensis Bem]
 gi|197086553|gb|ACH37824.1| sensor histidine kinase response regulator, PAS, PAS, PAS and PAS
           domain-containing protein [Geobacter bemidjiensis Bem]
          Length = 953

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 111/761 (14%), Positives = 225/761 (29%), Gaps = 59/761 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIG--MRLCDVSDILHIDPNNHIGDLLKRQNTW 143
            W+ D    L    + + +  G       G      +       +          R  T 
Sbjct: 87  IWDWDIVRDLLVWDDGMLQIYGIDQSAFNGCLESWKEAIHPEDRERALAATQAALRGETE 146

Query: 144 YGKT-TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF-GIVHVNRVDNDPRALGKRLD 201
           Y  +  +   +G   Y  I      I +       F G    V   ++  D     +   
Sbjct: 147 YDLSFRVLRPDGEIRY--IKADGTVIRNGEGAAVRFMGLNADVTEQKIILDSVIRERNKA 204

Query: 202 KKFSHLHEIKKGHSSVEK--------EKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253
           + +  +  +       E             +   +               T     KD  
Sbjct: 205 QLYLDIAGVMFAAIDREGIIRLINKKGGQILGYPEDELIGRNWFEVCLPPTAVGVVKDVF 264

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
            K     + + E    P         +  +            S   F            A
Sbjct: 265 AKQMAGEIESVEFFENPILTRSGEERMIAFHNTLLHEEGGAISGVLFSGEDITERKRAEA 324

Query: 314 YFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
             ++        +D      ++      +  AN +F  +T       I     ++ ++  
Sbjct: 325 SLEKAAGEWQAAMDASGDAIYLLDLDRRVLRANKAFYEMTGRSPESSIG--MHIAEIIHP 382

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
              +                 I     L     +      +        +   + +    
Sbjct: 383 GHSAPCVLCDAQTAL------IDFVTVLEAGHPDNHQGCPVEVSLKMVRDGNGKPVSMLV 436

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-PVED 491
              +    R  +  +     +   ++E + D I  I   G I+  N A  ++ G     D
Sbjct: 437 TRHDLSFDRKTQETLRESEERYRQLVEHSQD-IIFITSGGKIVFVNDAGVRILGAASAND 495

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
           IL +    F+  ++ +++  ++  + +  + +           +       +    +   
Sbjct: 496 ILSRRLLDFVHPDSKALVQEHME-MAATQMGRLPVTEVKYQRLDGSTFYGEVTATSIMHQ 554

Query: 552 S--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                 + + DI+  K  + +L H++K+              ++H+    LT I G++  
Sbjct: 555 GNPAIHVFVRDITNRKNLEEQLRHSQKL-----EAVGHLAGGIAHDFNNLLTVIGGYA-S 608

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           +   +  P       E  + I  S +   ++   LL  S+    K  +H +  SL+E V 
Sbjct: 609 LLEMKMEPGDPK--AEMVDQIVASTDRAANLTRSLLAFSR----KQEMHADDCSLNEIVQ 662

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
                ++     + I + T+       + AD   ++Q+ +N+ +NA     +GG   IST
Sbjct: 663 GVGKFLR-RIIGEDITLSTTLGPEPLTVFADKGQIEQVIINLATNARDAMENGGAFSIST 721

Query: 730 THT--------------SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
             T                +  +++V DTG G+      K  +PF          G+GTG
Sbjct: 722 GLTVFDGRFIQSRGFGKPGKFAVVKVSDTGKGIDKGVRGKIFEPFFTTK----EFGKGTG 777

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           LGL +   +V  + G   +   P KGT   I  PL     P
Sbjct: 778 LGLSIVYGIVKQHKGYIDVDGHPGKGTTFSIYLPLSGNPLP 818


>gi|325186907|emb|CCA21451.1| hybrid signal transduction histidine kinase putative [Albugo
            laibachii Nc14]
          Length = 1963

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 131/739 (17%), Positives = 261/739 (35%), Gaps = 68/739 (9%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCD--VSDILHIDPNNHIGDLLKRQNTWYGK 146
            +D +G +   + +  +   + A K+ G    D  ++     D        +   +T   K
Sbjct: 565  VDINGRINLWNIKAAELTQHPACKVFGEIFVDNFITGECRGDFAEVFTRAMNGDDTTNYK 624

Query: 147  TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
              L  I      V + L     Y +  E  G    G     RV           + ++S 
Sbjct: 625  LYLVTIA---RPVSVFLNVTARYDQFGELCGVIAIGQGTAERV---------TQEHEYSR 672

Query: 207  LHEIKKGHSSVEKEKYDIFSQQSPPPHLRM--KNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
            L +              +         +     ++V          DD        L  +
Sbjct: 673  LIDTANAPIFGVDTNGCVTIWNKTVAEITQYSSSEVMDKKLERFIMDDYKAAVGSVLEKA 732

Query: 265  EESSLPEQEDFHTINLNQYTKK--QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
             +       +F  I+             +  +        +      S     +      
Sbjct: 733  FDGVETANFEFSLISKLGRRVDILMNATSRFDEHGHVVGMVGIGQDISNRIAQEHE---Y 789

Query: 323  PETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
               +D    P F       +   N     +T Y   + +     L     +P+     A 
Sbjct: 790  SRLIDTANAPIFGVDASMCVNIWNKKAAQITNYSINEVMGEN--LVETFISPEYRPIVAD 847

Query: 382  KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
               +L ++ +    A+     I         +      + +     +   GI  +  D  
Sbjct: 848  ---VLSKALKGIQTANFEFPLITRPGTRIEIL-LNATPRMDSIGNIVGVVGIGQDITDRI 903

Query: 442  INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
                    +  +   +++  +  I  +++ G I   N+ + ++ GY    +L        
Sbjct: 904  -------AQEHEYFHLIDTANAPIFGVDKNGNINEWNQKIEQITGYTKSCVLGLSLVNTF 956

Query: 502  E-QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSL 556
                +   +   L + L+       E     +TK+   L L +                 
Sbjct: 957  VIPESRMQVRQLLYQALTG--VDVGEMELPMTTKKGHYLLLLVNASSKKDMHGNIRGAIG 1014

Query: 557  TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
               D +  K  +                K  FLA  SHE+RTPL +I+G  E++K++R  
Sbjct: 1015 VGQDYTARKHMEEV--------------KVHFLASFSHELRTPLNSILGMLELLKDKRGL 1060

Query: 617  PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
               + R++  A     SG+L+L+++ND+LD+SKIE+G M +   P  +++ +  +I + Q
Sbjct: 1061 DKDSERHVHMA---YVSGSLLLNLINDILDLSKIETGHMEITAAPFHMNDLLDYSIEIFQ 1117

Query: 677  LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN- 734
              A E+ IL++   ++++P+ ++ D+  ++QI LN+LSNAI FT  G  I ++ +     
Sbjct: 1118 FKARERNILLQQECSDDVPKLVIGDVVRLRQILLNLLSNAIKFTSEGS-ITVACSVVDEP 1176

Query: 735  ------EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                  ++++ +V DTGVGM   +  +    F ++  ++     G+GLGL + K +V+  
Sbjct: 1177 ALPPQFKKLLFQVIDTGVGMDVEDRSRLFCLFSKLERTRPNNPTGSGLGLAICKQLVELM 1236

Query: 789  MGKFYIFSTPAKGTLIEII 807
             G   + S   +G+     
Sbjct: 1237 DGAIDVASELNQGSNFYFT 1255



 Score = 43.9 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 20/144 (13%), Positives = 46/144 (31%), Gaps = 14/144 (9%)

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           +IL         I+  GII   + ++  L G+    + ++             +  YL  
Sbjct: 34  AILNTAMVPAFTIDMNGIIQFWSFSLRNLTGWSEHLVTQQDIKK-YTTVDGDNLVEYLKA 92

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHD----------IS 562
             + D++  +         EE  L+  + +  L  S         + D          IS
Sbjct: 93  ADTNDVQSGIMIHFNRKNAEEGTLAFTVKLVALRESGKLNGICGIVCDEKTVYGEENHIS 152

Query: 563 EWKQEKNKLSHAKKIAEKESSHKS 586
           E    +  +   +   ++ +  ++
Sbjct: 153 EHATHQIVVPMIQSEPKESTRKRN 176



 Score = 41.2 bits (95), Expect = 0.75,   Method: Composition-based stats.
 Identities = 14/132 (10%), Positives = 38/132 (28%), Gaps = 2/132 (1%)

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF-TVFLEQNTPSVM 509
             + C I +  +     ++  G I   N   ++L  +P   +  + F   F+        
Sbjct: 548 EREFCRIFDYVNAPSFGVDINGRINLWNIKAAELTQHPACKVFGEIFVDNFITGECRGDF 607

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLS-LRIIIKKLPFSSCYSLTMHDISEWKQEK 568
               T  ++ D     +   +   +   +   +     +              +E   ++
Sbjct: 608 AEVFTRAMNGDDTTNYKLYLVTIARPVSVFLNVTARYDQFGELCGVIAIGQGTAERVTQE 667

Query: 569 NKLSHAKKIAEK 580
           ++ S     A  
Sbjct: 668 HEYSRLIDTANA 679


>gi|329724647|gb|EGG61153.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Staphylococcus epidermidis VCU144]
          Length = 565

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 88/397 (22%), Positives = 184/397 (46%), Gaps = 31/397 (7%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRK--MEIEVMQLCSILEATSDGIAIINREGIIL 475
                   +      +   D+  R+ K     +I+  +L + LE     + +I++ G I+
Sbjct: 191 VRVPESNVKETRALFVTTNDLARRLQKLNNSQKIQSNRLKTTLENIPSSVLMIDKHGEIV 250

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
             N A  ++F  P + +  K +  F++ +   ++          +     +     +   
Sbjct: 251 VANHAYYQVFN-PDQMVENKSYIGFIDDSIEKLIIESFR----TEKVIYEQLEVAINNVH 305

Query: 536 EKLLSLRIIIKKLPFS---SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
            K   +  I              + +HDI+  ++ +              + + +F+A V
Sbjct: 306 TKYFDVSCIPILTKSKKNLQGMVVVLHDITNLQKLE--------------NLRREFVANV 351

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIE 651
           SHE++TP+T+I GF+E +     G   + + ++ + N I +  N +  +V DLLD+S IE
Sbjct: 352 SHELKTPITSIKGFAETLIE---GAKNDEQSLDMFLNIILKESNRIESLVTDLLDLSHIE 408

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
             K  L    ++L E     I  +Q  A  KRI I++    ++  I A    + Q+  N+
Sbjct: 409 QQK-ELEINYMNLSELAINIIDNLQTQAYNKRIKIQSEIEKDVI-IEAHENKIAQVITNL 466

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           LSNAI+++    ++I+   + ++ +V L ++D G+G++  + ++  + F ++  ++    
Sbjct: 467 LSNAINYSSEDNKVIVRV-YRNDNKVYLEIQDYGIGISETDQKRIFERFYRVDKARSRDS 525

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            GTGLGL + K +V+A+ G+  + S P KG++ +++F
Sbjct: 526 GGTGLGLSITKHIVEAHNGRIDVKSEPGKGSIFKVLF 562


>gi|254424881|ref|ZP_05038599.1| PAS fold family [Synechococcus sp. PCC 7335]
 gi|196192370|gb|EDX87334.1| PAS fold family [Synechococcus sp. PCC 7335]
          Length = 762

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 126/696 (18%), Positives = 237/696 (34%), Gaps = 87/696 (12%)

Query: 161 IDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKE 220
             ++ LP+   N    G              D   L + L  +F+H    + G + +   
Sbjct: 112 HQISYLPVVDDNDCLLGLI------------DQTRLLRALQNQFTHHSPEQSGRAQI--F 157

Query: 221 KYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFH---T 277
                  +       +        ++  + D VL  +  P  T +  S   Q  +     
Sbjct: 158 ADITLKIRQSLQLKDILQTTVDEIQHLLNADRVLIYQVLPDGTGKAVSEAVQAPYPSIIE 217

Query: 278 INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS 337
           I   +    + +  L    +            +++    E      +   K  +P     
Sbjct: 218 IPFPEEVFPEDYQALYAEGRIRAVTDVRSPKANIAECLVEFLAQW-DVRSKLIVPI---- 272

Query: 338 HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397
              +   +P+    T   + D + +   L  LL A +         + L    +     S
Sbjct: 273 ---VRPISPAISPSTN-SAEDTVPVHKHLWGLLIAHQCRQPRQWSDLELDLMQQLAGQIS 328

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
             L       +  L        K          N ++ E  + +   + +     QL  I
Sbjct: 329 LALS------QGQLMEYLEERVKLRTTELTQANNALQQEIQERKQIGKALRQSEAQLRLI 382

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
                  IA I+        N +  +  G+   D+  K     +       +  ++  +L
Sbjct: 383 TNNLPVLIAYIDCHQRYQFNNLSYEQWLGFSPVDMAGKTIQQVIGAAHYRSIQPHIETVL 442

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIII------------------------KKLPFSSC 553
           S   + T E         ++ +S+  I                         +       
Sbjct: 443 S-GQQVTYESELTFRDGRDRSVSVTYIPHIETAKEPKSSQASDSDEHKQNNRRDSRQVKG 501

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
           +     DIS+ K  +                K +F+A VSHE+RTPLT+I    +++   
Sbjct: 502 FFALTTDISDRKAIE--------------RMKDEFIAVVSHELRTPLTSIHTSLKLLATG 547

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
             G L      E     D + + ++ +VN++LD+ +IESG++ L  +     E + EA+ 
Sbjct: 548 LLGQLLAEGQ-EMLTVADENTDRLVRLVNNVLDLQRIESGEVTLDAQECEAAELLDEAVE 606

Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-- 731
            V   A +  I I     +    I AD   + +   N+L NAI F+P+G  + ++     
Sbjct: 607 SVLTIAQQHNIRIEAHAES--LSIWADPDYIVRALTNLLGNAIKFSPAGEVVCLTVKAVS 664

Query: 732 -------TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
                  T  E  +  V+D G G+ + +L+   + F Q+ +S   +  GTGLGL + + +
Sbjct: 665 SSLEKPSTDQEMALFCVQDNGQGIPHNKLDSIFERFQQVDSSDSRKKGGTGLGLTICRKI 724

Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPLY----DTSHP 816
           V+ + GK +  S   KG+      PL     ++S P
Sbjct: 725 VEQHGGKIWAESQLGKGSRFSFTVPLAPLLKESSAP 760


>gi|323442919|gb|EGB00542.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus O46]
          Length = 546

 Score =  325 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 86/398 (21%), Positives = 167/398 (41%), Gaps = 33/398 (8%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEI--EVMQLCSILEATSDGIAIINREGIIL 475
                          +   D+  R+ K   E   +  +L + +E     I +I+R G I+
Sbjct: 170 IRVPESNVVETKALFVSTNDLARRLQKLNNEQKIQSNRLKTTIENIPSAILMIDRNGKIV 229

Query: 476 STNRAVSKLFGYPVEDILRKPFTVF-LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
             N+A  + F                      + +   + E   ++     +     +  
Sbjct: 230 VANKAYYEQFNIS------HNIEQVGYHGYVNTEIEQLILESFKVEKPIYEQLEVAINQV 283

Query: 535 EEKLLSLRIIIKKLPFS---SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
             K   +  +              + MHDI+  KQ +              + + +F+A 
Sbjct: 284 HAKYFDISCVPILTRSQKSLQGILVVMHDITNLKQLE--------------NLRREFVAN 329

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKI 650
           VSHE++TP+T+I GF+E + +   G   +   ++ + N I +  N +  +V DLLD+S I
Sbjct: 330 VSHELKTPITSIKGFAETLID---GAKNDAESLDMFLNIILKESNRIESLVTDLLDLSHI 386

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710
           E     L  + ++L +     I  +   AN+K I I T    ++  + A    + Q+  N
Sbjct: 387 E-QHTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTDIEKDVI-VKAQESKIAQVITN 444

Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           +L+NAI+++   G I +   +  +  VI  V+D G+G+   + ++  + F ++  ++   
Sbjct: 445 LLTNAINYSYEDGDINVRV-YRDDFRVIFEVQDFGIGIKLEDQQRIFERFYRVDKARSRD 503

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
             GTGLGL + K +V+A+ G   + S   KG+  ++I 
Sbjct: 504 SGGTGLGLSITKHIVEAHQGNIEVNSQVGKGSTFKVIL 541


>gi|323440764|gb|EGA98473.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus O11]
          Length = 546

 Score =  325 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 86/398 (21%), Positives = 167/398 (41%), Gaps = 33/398 (8%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEI--EVMQLCSILEATSDGIAIINREGIIL 475
                          +   D+  R+ K   E   +  +L + +E     I +I+R G I+
Sbjct: 170 IRVPESNVVETKALFVSTNDLARRLQKLNNEQKIQSNRLKTTIENIPSAILMIDRNGKIV 229

Query: 476 STNRAVSKLFGYPVEDILRKPFTVF-LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
             N+A  + F                      + +   + E   ++     +     +  
Sbjct: 230 VANKAYYEQFNIS------HNIEQVGYHGYVNTEIEQLILESFKVEKPIYEQLEVAINQV 283

Query: 535 EEKLLSLRIIIKKLPFS---SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
             K   +  +              + MHDI+  KQ +              + + +F+A 
Sbjct: 284 HAKYFDISCVPILTRSQKSLQGILVVMHDITNLKQLE--------------NLRREFVAN 329

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKI 650
           VSHE++TP+T+I GF+E + +   G   +   ++ + N I +  N +  +V DLLD+S I
Sbjct: 330 VSHELKTPITSIKGFAETLID---GAKNDAESLDMFLNIILKESNRIESLVTDLLDLSHI 386

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710
           E     L  + ++L +     I  +   AN+K I I T    ++  + A    + Q+  N
Sbjct: 387 E-QHTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTDIEKDVI-VKAQESKIAQVITN 444

Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           +L+NAI+++   G I +   +  +  VI  V+D G+G+   + ++  + F ++  ++   
Sbjct: 445 LLTNAINYSYEDGDINVRV-YRDDFRVIFEVQDFGIGIKLEDQQRIFERFYRVDKARSRD 503

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
             GTGLGL + K +V+A+ G   + S   KG+  ++I 
Sbjct: 504 SGGTGLGLSITKHIVEAHQGNIEVNSQVGKGSTFKVIL 541


>gi|312830070|emb|CBX34912.1| sensory box protein [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|329727161|gb|EGG63617.1| putative alkaline phosphatase synthesis sensor protein PhoR
           [Staphylococcus aureus subsp. aureus 21172]
 gi|329733268|gb|EGG69605.1| putative alkaline phosphatase synthesis sensor protein PhoR
           [Staphylococcus aureus subsp. aureus 21193]
          Length = 546

 Score =  325 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 86/398 (21%), Positives = 167/398 (41%), Gaps = 33/398 (8%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEI--EVMQLCSILEATSDGIAIINREGIIL 475
                          +   D+  R+ K   E   +  +L + +E     I +I+R G I+
Sbjct: 170 IRVPESNVVETKALFVSTNDLARRLQKLNNEQKIQSNRLKTTIENIPSAILMIDRNGKIV 229

Query: 476 STNRAVSKLFGYPVEDILRKPFTVF-LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
             N+A  + F                      + +   + E   ++     +     +  
Sbjct: 230 VANKAYYEQFNIS------HNIEQVGYHGYVNTEIEQLILESFKVEKPIYEQLEVAINQV 283

Query: 535 EEKLLSLRIIIKKLPFS---SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
             K   +  +              + MHDI+  KQ +              + + +F+A 
Sbjct: 284 HAKYFDISCVPILTRSQKSLQGILVVMHDITNLKQLE--------------NLRREFVAN 329

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKI 650
           VSHE++TP+T+I GF+E + +   G   +   ++ + N I +  N +  +V DLLD+S I
Sbjct: 330 VSHELKTPITSIKGFAETLID---GAKNDAESLDMFLNIILKESNRIESLVTDLLDLSHI 386

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710
           E     L  + ++L +     I  +   AN+K I I T    ++  + A    + Q+  N
Sbjct: 387 E-QHTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTDIEKDVI-VKAQESKIAQVITN 444

Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           +L+NAI+++   G I +   +  +  VI  V+D G+G+   + ++  + F ++  ++   
Sbjct: 445 LLTNAINYSYEDGDINVRV-YRDDFRVIFEVQDFGIGIKLEDQQRIFERFYRVDKARSRD 503

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
             GTGLGL + K +V+A+ G   + S   KG+  ++I 
Sbjct: 504 SGGTGLGLSITKHIVEAHQGNIEVNSQVGKGSTFKVIL 541


>gi|302333357|gb|ADL23550.1| alkaline phosphatase synthesis sensor protein PhoR [Staphylococcus
           aureus subsp. aureus JKD6159]
          Length = 554

 Score =  325 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 86/398 (21%), Positives = 167/398 (41%), Gaps = 33/398 (8%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEI--EVMQLCSILEATSDGIAIINREGIIL 475
                          +   D+  R+ K   E   +  +L + +E     I +I+R G I+
Sbjct: 178 IRVPESNVVETKALFVSTNDLARRLQKLNNEQKIQSNRLKTTIENIPSAILMIDRNGKIV 237

Query: 476 STNRAVSKLFGYPVEDILRKPFTVF-LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
             N+A  + F                      + +   + E   ++     +     +  
Sbjct: 238 VANKAYYEQFNIS------HNIEQVGYHGYVNTEIEQLILESFKVEKPIYEQLEVAINQV 291

Query: 535 EEKLLSLRIIIKKLPFS---SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
             K   +  +              + MHDI+  KQ +              + + +F+A 
Sbjct: 292 HAKYFDISCVPILTRSQKSLQGILVVMHDITNLKQLE--------------NLRREFVAN 337

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKI 650
           VSHE++TP+T+I GF+E + +   G   +   ++ + N I +  N +  +V DLLD+S I
Sbjct: 338 VSHELKTPITSIKGFAETLID---GAKNDAESLDMFLNIILKESNRIESLVTDLLDLSHI 394

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710
           E     L  + ++L +     I  +   AN+K I I T    ++  + A    + Q+  N
Sbjct: 395 E-QHTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTDIEKDVI-VKAQESKIAQVITN 452

Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           +L+NAI+++   G I +   +  +  VI  V+D G+G+   + ++  + F ++  ++   
Sbjct: 453 LLTNAINYSYEDGDINVRV-YRDDFRVIFEVQDFGIGIKLEDQQRIFERFYRVDKARSRD 511

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
             GTGLGL + K +V+A+ G   + S   KG+  ++I 
Sbjct: 512 SGGTGLGLSITKHIVEAHQGNIEVNSQVGKGSTFKVIL 549


>gi|282927822|ref|ZP_06335433.1| two-component system, OmpR family, phosphate regulon sensor
           histidine kinase PhoR [Staphylococcus aureus A10102]
 gi|282590332|gb|EFB95411.1| two-component system, OmpR family, phosphate regulon sensor
           histidine kinase PhoR [Staphylococcus aureus A10102]
          Length = 554

 Score =  325 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 86/398 (21%), Positives = 167/398 (41%), Gaps = 33/398 (8%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEI--EVMQLCSILEATSDGIAIINREGIIL 475
                          +   D+  R+ K   E   +  +L + +E     I +I+R G I+
Sbjct: 178 IRVPESNVVETKALFVSTNDLARRLQKLNNEQKIQSNRLKTTIENIPSAILMIDRNGKIV 237

Query: 476 STNRAVSKLFGYPVEDILRKPFTVF-LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
             N+A  + F                      + +   + E   ++     +     +  
Sbjct: 238 VANKAYYEQFNIS------HNIEQVGYHGYVNTEIEQLILESFKVEKPIYEQLEVAINQV 291

Query: 535 EEKLLSLRIIIKKLPFS---SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
             K   +  +              + MHDI+  KQ +              + + +F+A 
Sbjct: 292 HAKYFDISCVPILTRSQKSLQGILVVMHDITNLKQLE--------------NLRREFVAN 337

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKI 650
           VSHE++TP+T+I GF+E + +   G   +   ++ + N I +  N +  +V DLLD+S I
Sbjct: 338 VSHELKTPITSIKGFAETLID---GAKNDAESLDMFLNIILKESNRIESLVTDLLDLSHI 394

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710
           E     L  + ++L +     I  +   AN+K I I T    ++  + A    + Q+  N
Sbjct: 395 E-QHTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTDIEKDVI-VKAQESKIAQVITN 452

Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           +L+NAI+++   G I +   +  +  VI  V+D G+G+   + ++  + F ++  ++   
Sbjct: 453 LLTNAINYSYEDGDINVRV-YRDDFRVIFEVQDFGIGIKLEDQQRIFERFYRVDKARSRD 511

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
             GTGLGL + K +V+A+ G   + S   KG+  ++I 
Sbjct: 512 SGGTGLGLSITKHIVEAHQGNIEVNSQVGKGSTFKVIL 549


>gi|269941172|emb|CBI49559.1| alkaline phosphatase synthesis sensor protein PhoR [Staphylococcus
           aureus subsp. aureus TW20]
 gi|302751518|gb|ADL65695.1| alkaline phosphatase synthesis sensor protein PhoR [Staphylococcus
           aureus subsp. aureus str. JKD6008]
 gi|329314364|gb|AEB88777.1| Sensory box histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus T0131]
 gi|329728409|gb|EGG64846.1| putative alkaline phosphatase synthesis sensor protein PhoR
           [Staphylococcus aureus subsp. aureus 21189]
          Length = 546

 Score =  325 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 86/398 (21%), Positives = 167/398 (41%), Gaps = 33/398 (8%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEI--EVMQLCSILEATSDGIAIINREGIIL 475
                          +   D+  R+ K   E   +  +L + +E     I +I+R G I+
Sbjct: 170 IRVPESNVVETKALFVSTNDLARRLQKLNNEQKIQSNRLKTTIENIPSAILMIDRNGKIV 229

Query: 476 STNRAVSKLFGYPVEDILRKPFTVF-LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
             N+A  + F                      + +   + E   ++     +     +  
Sbjct: 230 VANKAYYEQFNIS------HNIEQVGYHGYVNTEIEQLILESFKVEKPIYEQLEVAINQV 283

Query: 535 EEKLLSLRIIIKKLPFS---SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
             K   +  +              + MHDI+  KQ +              + + +F+A 
Sbjct: 284 HAKYFDISCVPILTRSQKSLQGILVVMHDITNLKQLE--------------NLRREFVAN 329

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKI 650
           VSHE++TP+T+I GF+E + +   G   +   ++ + N I +  N +  +V DLLD+S I
Sbjct: 330 VSHELKTPITSIKGFAETLID---GAKNDAESLDMFLNIILKESNRIESLVTDLLDLSHI 386

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710
           E     L  + ++L +     I  +   AN+K I I T    ++  + A    + Q+  N
Sbjct: 387 E-QHTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTDIEKDVI-VKAQESKIAQVITN 444

Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           +L+NAI+++   G I +   +  +  VI  V+D G+G+   + ++  + F ++  ++   
Sbjct: 445 LLTNAINYSYEDGDINVRV-YRDDFRVIFEVQDFGIGIKLEDQQRIFERFYRVDKARSRD 503

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
             GTGLGL + K +V+A+ G   + S   KG+  ++I 
Sbjct: 504 SGGTGLGLSITKHIVEAHQGNIEVNSQVGKGSTFKVIL 541


>gi|87160006|ref|YP_494333.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|88195499|ref|YP_500303.1| histidine kinase [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|87125980|gb|ABD20494.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|87203057|gb|ABD30867.1| Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase domain
           protein [Staphylococcus aureus subsp. aureus NCTC 8325]
          Length = 553

 Score =  325 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 86/398 (21%), Positives = 167/398 (41%), Gaps = 33/398 (8%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEI--EVMQLCSILEATSDGIAIINREGIIL 475
                          +   D+  R+ K   E   +  +L + +E     I +I+R G I+
Sbjct: 177 IRVPESNVVETKALFVSTNDLARRLQKLNNEQKIQSNRLKTTIENIPSAILMIDRNGKIV 236

Query: 476 STNRAVSKLFGYPVEDILRKPFTVF-LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
             N+A  + F                      + +   + E   ++     +     +  
Sbjct: 237 VANKAYYEQFNIS------HNIEQVGYHGYVNTEIEQLILESFKVEKPIYEQLEVAINQV 290

Query: 535 EEKLLSLRIIIKKLPFS---SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
             K   +  +              + MHDI+  KQ +              + + +F+A 
Sbjct: 291 HAKYFDISCVPILTRSQKSLQGILVVMHDITNLKQLE--------------NLRREFVAN 336

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKI 650
           VSHE++TP+T+I GF+E + +   G   +   ++ + N I +  N +  +V DLLD+S I
Sbjct: 337 VSHELKTPITSIKGFAETLID---GAKNDAESLDMFLNIILKESNRIESLVTDLLDLSHI 393

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710
           E     L  + ++L +     I  +   AN+K I I T    ++  + A    + Q+  N
Sbjct: 394 E-QHTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTDIEKDVI-VKAQESKIAQVITN 451

Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           +L+NAI+++   G I +   +  +  VI  V+D G+G+   + ++  + F ++  ++   
Sbjct: 452 LLTNAINYSYEDGDINVRV-YRDDFRVIFEVQDFGIGIKLEDQQRIFERFYRVDKARSRD 510

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
             GTGLGL + K +V+A+ G   + S   KG+  ++I 
Sbjct: 511 SGGTGLGLSITKHIVEAHQGNIEVNSQVGKGSTFKVIL 548


>gi|78186516|ref|YP_374559.1| multi-sensor signal transduction histidine kinase [Chlorobium
           luteolum DSM 273]
 gi|78166418|gb|ABB23516.1| multi-sensor signal transduction histidine kinase [Chlorobium
           luteolum DSM 273]
          Length = 596

 Score =  325 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 76/372 (20%), Positives = 161/372 (43%), Gaps = 23/372 (6%)

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
              RKM        ++     + I + +    I+  N + S++F         +P T+  
Sbjct: 238 EEIRKMSRSEEWYRAVFSGIREAIVVTDAACDIILLNPSASRMFRLSGAMFQSRPLTML- 296

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR-IIIKKLPFSSCYSLTMHD 560
                S +   +  +         E++ + + K  + + +  + + +          ++D
Sbjct: 297 ---GDSGLCALIEGVHRSRTAVLKEELAVMTVKGVRTMQVSSMPVVRDGEFDGSVFVLND 353

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I+  +  +                + DF++ VSHE+RTPLT+I G++E + +        
Sbjct: 354 ITRLRNLE--------------RIRRDFVSSVSHELRTPLTSIRGYAETLLDGAMN--DP 397

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
                +   I +    +  +VND+LD+SKIESG++   + PV L   V  ++ +++    
Sbjct: 398 EHAQAFLRIILQESEQLTALVNDVLDLSKIESGRIEYTYGPVDLSRVVEHSMEMLRPAFE 457

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG-GQIIISTTHTSNEEVIL 739
           +K +    S    +P + AD   +  +  N+L NA+ +  +G G++       + + V  
Sbjct: 458 KKEVKFELSIPPGLPPVQADEAYLGIVIRNLLDNAVKYVDAGTGKVRFR-AFRTGDSVQF 516

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V D G G+ + +LE+  + F ++  ++  +  GTGLGL + K +V ++ G   + S   
Sbjct: 517 DVEDNGSGIAHQDLERIFERFYRVDKARSRQLGGTGLGLSIVKHIVLSHKGDIKVRSRLN 576

Query: 800 KGTLIEIIFPLY 811
           +G+   +  P+ 
Sbjct: 577 RGSTFSVTLPMA 588


>gi|57650563|ref|YP_186576.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus COL]
 gi|151221797|ref|YP_001332619.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|161509906|ref|YP_001575565.1| sensor histidine kinase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221142558|ref|ZP_03567051.1| sensor histidine kinase [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|258451794|ref|ZP_05699816.1| sensory box histidine kinase PhoR [Staphylococcus aureus A5948]
 gi|262048662|ref|ZP_06021545.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus D30]
 gi|262052263|ref|ZP_06024468.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus 930918-3]
 gi|282920232|ref|ZP_06327957.1| two-component system, OmpR family, phosphate regulon sensor
           histidine kinase PhoR [Staphylococcus aureus A9765]
 gi|284024740|ref|ZP_06379138.1| sensor histidine kinase [Staphylococcus aureus subsp. aureus 132]
 gi|304380717|ref|ZP_07363386.1| phosphate regulon sensor histidine kinase protein PhoR
           [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|57284749|gb|AAW36843.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus COL]
 gi|150374597|dbj|BAF67857.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|160368715|gb|ABX29686.1| sensor histidine kinase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|257860506|gb|EEV83332.1| sensory box histidine kinase PhoR [Staphylococcus aureus A5948]
 gi|259159864|gb|EEW44903.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus 930918-3]
 gi|259163309|gb|EEW47868.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus D30]
 gi|282594580|gb|EFB99565.1| two-component system, OmpR family, phosphate regulon sensor
           histidine kinase PhoR [Staphylococcus aureus A9765]
 gi|304340716|gb|EFM06647.1| phosphate regulon sensor histidine kinase protein PhoR
           [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|315198611|gb|EFU28939.1| sensor histidine kinase [Staphylococcus aureus subsp. aureus CGS01]
 gi|320140429|gb|EFW32283.1| PAS domain S-box [Staphylococcus aureus subsp. aureus MRSA131]
 gi|320143968|gb|EFW35737.1| PAS domain S-box [Staphylococcus aureus subsp. aureus MRSA177]
          Length = 554

 Score =  325 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 86/398 (21%), Positives = 167/398 (41%), Gaps = 33/398 (8%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEI--EVMQLCSILEATSDGIAIINREGIIL 475
                          +   D+  R+ K   E   +  +L + +E     I +I+R G I+
Sbjct: 178 IRVPESNVVETKALFVSTNDLARRLQKLNNEQKIQSNRLKTTIENIPSAILMIDRNGKIV 237

Query: 476 STNRAVSKLFGYPVEDILRKPFTVF-LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
             N+A  + F                      + +   + E   ++     +     +  
Sbjct: 238 VANKAYYEQFNIS------HNIEQVGYHGYVNTEIEQLILESFKVEKPIYEQLEVAINQV 291

Query: 535 EEKLLSLRIIIKKLPFS---SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
             K   +  +              + MHDI+  KQ +              + + +F+A 
Sbjct: 292 HAKYFDISCVPILTRSQKSLQGILVVMHDITNLKQLE--------------NLRREFVAN 337

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKI 650
           VSHE++TP+T+I GF+E + +   G   +   ++ + N I +  N +  +V DLLD+S I
Sbjct: 338 VSHELKTPITSIKGFAETLID---GAKNDAESLDMFLNIILKESNRIESLVTDLLDLSHI 394

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710
           E     L  + ++L +     I  +   AN+K I I T    ++  + A    + Q+  N
Sbjct: 395 E-QHTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTDIEKDVI-VKAQESKIAQVITN 452

Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           +L+NAI+++   G I +   +  +  VI  V+D G+G+   + ++  + F ++  ++   
Sbjct: 453 LLTNAINYSYEDGDINVRV-YRDDFRVIFEVQDFGIGIKLEDQQRIFERFYRVDKARSRD 511

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
             GTGLGL + K +V+A+ G   + S   KG+  ++I 
Sbjct: 512 SGGTGLGLSITKHIVEAHQGNIEVNSQVGKGSTFKVIL 549


>gi|82751280|ref|YP_417021.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus RF122]
 gi|82656811|emb|CAI81240.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus RF122]
          Length = 554

 Score =  325 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 86/398 (21%), Positives = 167/398 (41%), Gaps = 33/398 (8%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEI--EVMQLCSILEATSDGIAIINREGIIL 475
                          +   D+  R+ K   E   +  +L + +E     I +I+R G I+
Sbjct: 178 IRVPESNVVETKALFVSTNDLARRLQKLNNEQKIQSNRLKTTIENIPSAILMIDRNGKIV 237

Query: 476 STNRAVSKLFGYPVEDILRKPFTVF-LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
             N+A  + F                      + +   + E   ++     +     +  
Sbjct: 238 VANKAYYEQFNIS------HNIEQVGYHGYVNTEIEQLILESFKVEKPIYEQLEVAINQV 291

Query: 535 EEKLLSLRIIIKKLPFS---SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
             K   +  +              + MHDI+  KQ +              + + +F+A 
Sbjct: 292 HAKYFDISCVPILTRSQKSLQGILVVMHDITNLKQLE--------------NLRREFVAN 337

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKI 650
           VSHE++TP+T+I GF+E + +   G   +   ++ + N I +  N +  +V DLLD+S I
Sbjct: 338 VSHELKTPITSIKGFAETLID---GAKNDAESLDMFLNIILKESNRIESLVTDLLDLSHI 394

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710
           E     L  + ++L +     I  +   AN+K I I T    ++  + A    + Q+  N
Sbjct: 395 E-QHTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTDIEKDVI-VKAQESKIAQVITN 452

Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           +L+NAI+++   G I +   +  +  VI  V+D G+G+   + ++  + F ++  ++   
Sbjct: 453 LLTNAINYSYEDGDINVRV-YRDDFRVIFEVQDFGIGIKLEDQQRIFERFYRVDKARSRD 511

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
             GTGLGL + K +V+A+ G   + S   KG+  ++I 
Sbjct: 512 SGGTGLGLSITKHIVEAHQGNIEVNSQVGKGSTFKVIL 549


>gi|49486518|ref|YP_043739.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus MSSA476]
 gi|49244961|emb|CAG43422.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus MSSA476]
          Length = 554

 Score =  325 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 86/398 (21%), Positives = 167/398 (41%), Gaps = 33/398 (8%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEI--EVMQLCSILEATSDGIAIINREGIIL 475
                          +   D+  R+ K   E   +  +L + +E     I +I+R G I+
Sbjct: 178 IRVPESNVVETKALFVSTNDLARRLQKLNNEQKIQSNRLKTTIENIPSAILMIDRNGKIV 237

Query: 476 STNRAVSKLFGYPVEDILRKPFTVF-LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
             N+A  + F                      + +   + E   ++     +     +  
Sbjct: 238 VANKAYYEQFNIS------HNIEQVGYHGYVNTEIEQLILESFKVEKPIYEQLEVAINQV 291

Query: 535 EEKLLSLRIIIKKLPFS---SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
             K   +  +              + MHDI+  KQ +              + + +F+A 
Sbjct: 292 HAKYFDISCVPILTRSQKSLQGILVVMHDITNLKQLE--------------NLRREFVAN 337

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKI 650
           VSHE++TP+T+I GF+E + +   G   +   ++ + N I +  N +  +V DLLD+S I
Sbjct: 338 VSHELKTPITSIKGFAETLID---GAKNDAESLDMFLNIILKESNRIESLVTDLLDLSHI 394

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710
           E     L  + ++L +     I  +   AN+K I I T    ++  + A    + Q+  N
Sbjct: 395 E-QHTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTDIEKDVI-VKAQESKIAQVITN 452

Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           +L+NAI+++   G I +   +  +  VI  V+D G+G+   + ++  + F ++  ++   
Sbjct: 453 LLTNAINYSYEDGDINVRV-YRDDFRVIFEVQDFGIGIKLEDQQRIFERFYRVDKARSRD 511

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
             GTGLGL + K +V+A+ G   + S   KG+  ++I 
Sbjct: 512 SGGTGLGLSITKHIVEAHQGNIEVNSQVGKGSTFKVIL 549


>gi|15924682|ref|NP_372216.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus Mu50]
 gi|15927270|ref|NP_374803.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus N315]
 gi|21283365|ref|NP_646453.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus MW2]
 gi|148268172|ref|YP_001247115.1| multi-sensor signal transduction histidine kinase [Staphylococcus
           aureus subsp. aureus JH9]
 gi|150394239|ref|YP_001316914.1| PAS sensor protein [Staphylococcus aureus subsp. aureus JH1]
 gi|156980009|ref|YP_001442268.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus Mu3]
 gi|253317164|ref|ZP_04840377.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus str. CF-Marseille]
 gi|253732343|ref|ZP_04866508.1| sensor histidine kinase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253734524|ref|ZP_04868689.1| sensor histidine kinase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|255006476|ref|ZP_05145077.2| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus Mu50-omega]
 gi|257794077|ref|ZP_05643056.1| multi-sensor signal transduction histidine kinase [Staphylococcus
           aureus A9781]
 gi|258415781|ref|ZP_05682052.1| multi-sensor signal transduction histidine kinase [Staphylococcus
           aureus A9763]
 gi|258421982|ref|ZP_05684902.1| multi-sensor signal transduction histidine kinase [Staphylococcus
           aureus A9719]
 gi|258438260|ref|ZP_05689544.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus A9299]
 gi|258443718|ref|ZP_05692057.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus A8115]
 gi|258445929|ref|ZP_05694105.1| multi-sensor signal transduction histidine kinase [Staphylococcus
           aureus A6300]
 gi|258448390|ref|ZP_05696507.1| multi-sensor signal transduction histidine kinase [Staphylococcus
           aureus A6224]
 gi|258454129|ref|ZP_05702100.1| multi-sensor signal transduction histidine kinase [Staphylococcus
           aureus A5937]
 gi|269203310|ref|YP_003282579.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282893187|ref|ZP_06301421.1| two-component system, OmpR family, phosphate regulon sensor
           histidine kinase PhoR [Staphylococcus aureus A8117]
 gi|295406002|ref|ZP_06815810.1| two-component system [Staphylococcus aureus A8819]
 gi|296274881|ref|ZP_06857388.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus MR1]
 gi|297207595|ref|ZP_06924030.1| phosphate regulon sensor histidine kinase protein PhoR
           [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|297245072|ref|ZP_06928949.1| two-component system [Staphylococcus aureus A8796]
 gi|300911676|ref|ZP_07129120.1| phosphate regulon sensor histidine kinase protein PhoR
           [Staphylococcus aureus subsp. aureus TCH70]
 gi|13701488|dbj|BAB42782.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus N315]
 gi|14247464|dbj|BAB57854.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus Mu50]
 gi|21204805|dbj|BAB95501.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus MW2]
 gi|147741241|gb|ABQ49539.1| multi-sensor signal transduction histidine kinase [Staphylococcus
           aureus subsp. aureus JH9]
 gi|149946691|gb|ABR52627.1| PAS sensor protein [Staphylococcus aureus subsp. aureus JH1]
 gi|156722144|dbj|BAF78561.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus Mu3]
 gi|253723865|gb|EES92594.1| sensor histidine kinase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253727465|gb|EES96194.1| sensor histidine kinase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257788049|gb|EEV26389.1| multi-sensor signal transduction histidine kinase [Staphylococcus
           aureus A9781]
 gi|257839374|gb|EEV63847.1| multi-sensor signal transduction histidine kinase [Staphylococcus
           aureus A9763]
 gi|257842026|gb|EEV66455.1| multi-sensor signal transduction histidine kinase [Staphylococcus
           aureus A9719]
 gi|257848304|gb|EEV72295.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus A9299]
 gi|257851124|gb|EEV75067.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus A8115]
 gi|257855171|gb|EEV78110.1| multi-sensor signal transduction histidine kinase [Staphylococcus
           aureus A6300]
 gi|257858358|gb|EEV81243.1| multi-sensor signal transduction histidine kinase [Staphylococcus
           aureus A6224]
 gi|257863581|gb|EEV86338.1| multi-sensor signal transduction histidine kinase [Staphylococcus
           aureus A5937]
 gi|262075600|gb|ACY11573.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282764505|gb|EFC04631.1| two-component system, OmpR family, phosphate regulon sensor
           histidine kinase PhoR [Staphylococcus aureus A8117]
 gi|285817375|gb|ADC37862.1| Phosphate regulon sensor protein PhoR [Staphylococcus aureus
           04-02981]
 gi|294968999|gb|EFG45020.1| two-component system [Staphylococcus aureus A8819]
 gi|296887612|gb|EFH26510.1| phosphate regulon sensor histidine kinase protein PhoR
           [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|297178152|gb|EFH37400.1| two-component system [Staphylococcus aureus A8796]
 gi|300887097|gb|EFK82298.1| phosphate regulon sensor histidine kinase protein PhoR
           [Staphylococcus aureus subsp. aureus TCH70]
 gi|315130674|gb|EFT86660.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus CGS03]
          Length = 554

 Score =  325 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 86/398 (21%), Positives = 167/398 (41%), Gaps = 33/398 (8%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEI--EVMQLCSILEATSDGIAIINREGIIL 475
                          +   D+  R+ K   E   +  +L + +E     I +I+R G I+
Sbjct: 178 IRVPESNVVETKALFVSTNDLARRLQKLNNEQKIQSNRLKTTIENIPSAILMIDRNGKIV 237

Query: 476 STNRAVSKLFGYPVEDILRKPFTVF-LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
             N+A  + F                      + +   + E   ++     +     +  
Sbjct: 238 VANKAYYEQFNIS------HNIEQVGYHGYVNTEIEQLILESFKVEKPIYEQLEVAINQV 291

Query: 535 EEKLLSLRIIIKKLPFS---SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
             K   +  +              + MHDI+  KQ +              + + +F+A 
Sbjct: 292 HAKYFDISCVPILTRSQKSLQGILVVMHDITNLKQLE--------------NLRREFVAN 337

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKI 650
           VSHE++TP+T+I GF+E + +   G   +   ++ + N I +  N +  +V DLLD+S I
Sbjct: 338 VSHELKTPITSIKGFAETLID---GAKNDAESLDMFLNIILKESNRIESLVTDLLDLSHI 394

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710
           E     L  + ++L +     I  +   AN+K I I T    ++  + A    + Q+  N
Sbjct: 395 E-QHTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTDIEKDVI-VKAQESKIAQVITN 452

Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           +L+NAI+++   G I +   +  +  VI  V+D G+G+   + ++  + F ++  ++   
Sbjct: 453 LLTNAINYSYEDGDINVRV-YRDDFRVIFEVQDFGIGIKLEDQQRIFERFYRVDKARSRD 511

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
             GTGLGL + K +V+A+ G   + S   KG+  ++I 
Sbjct: 512 SGGTGLGLSITKHIVEAHQGNIEVNSQVGKGSTFKVIL 549


>gi|229014631|ref|ZP_04171745.1| hypothetical protein bmyco0001_50310 [Bacillus mycoides DSM 2048]
 gi|228746642|gb|EEL96531.1| hypothetical protein bmyco0001_50310 [Bacillus mycoides DSM 2048]
          Length = 611

 Score =  325 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 84/376 (22%), Positives = 161/376 (42%), Gaps = 25/376 (6%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +  +   E E  +L S+L   +DG+   +R+G I+  N    K+     E  L +     
Sbjct: 256 QQARSSTESERRKLSSVLSHMTDGVIATDRKGDIILLNDPAEKMLNVSRETALDQSVLEV 315

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
           L       ++H   E  S+ L  +                  +I K+   ++     ++D
Sbjct: 316 LGIQEEFTLDHLYEEPDSVLLDFSTRNEPYILRAS-----FSVIQKETGKANGLIAVLYD 370

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           ++E ++ + +              + +F+A VSHE+RTPLT +  + E + +  +     
Sbjct: 371 VTEQERIEQE--------------RREFVANVSHELRTPLTTMRSYLEALTDGAWQDPNI 416

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
                +          ++ +VN LL +SK++S +  L  E V   +  +  I   +  + 
Sbjct: 417 APQ--FLTVTQEETERMIRLVNALLQLSKLDSTEHRLMKEWVDFTDFFNNVIDRFE-MSK 473

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV-IL 739
           E+ +  + SF+     I  D   + Q+  NI+SNA+ ++P GG +          E+  +
Sbjct: 474 EQNVSFKRSFSKKSRFIDMDTDKITQVLYNIISNALKYSPEGGTVT--YRLRDRGELLEI 531

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V D G+G+    ++K  + F ++  ++  +  GTGLGL +AK M++A+ G  +  S   
Sbjct: 532 SVSDQGMGIPKENVDKIFERFYRVDKARSRQMGGTGLGLAIAKEMIEAHGGSVWAKSEEG 591

Query: 800 KGTLIEIIFPLYDTSH 815
           KGT I    P+     
Sbjct: 592 KGTTIYFTLPMATDEE 607


>gi|196249913|ref|ZP_03148608.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           G11MC16]
 gi|196210427|gb|EDY05191.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           G11MC16]
          Length = 518

 Score =  325 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 98/395 (24%), Positives = 177/395 (44%), Gaps = 22/395 (5%)

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINK--RKMEIEVMQLCSILEATSDGIAIINREGII 474
                +   +           +   + +  R  EI+  +L +++E    G+  I+  G I
Sbjct: 140 AARVPDGEYKEAGMLVRSINRLARNLQEMSRAREIQTDRLHTLIENVGSGLLFIDHRGHI 199

Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
              NRA    F     D L +P+   L       +   +   ++    +   ++T+G  +
Sbjct: 200 HLINRAFQTYFHLDSSDCLYRPYADVLPHRDIIKLIDDI--FITETAMRRHMRLTIGIER 257

Query: 535 EEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
           +   +    II          +  HDI+E K+ +                + DF+A VSH
Sbjct: 258 KHFDVYGAPIIGTNAEWKGIVVVFHDITELKRLE--------------QIRKDFVANVSH 303

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           E++TP+T+I GF+E + +             +   I +    +  +V +LLD+SKIE   
Sbjct: 304 ELKTPVTSIKGFAETLLDGAM--KDEEALEHFLTIILKESERLQTLVEELLDLSKIEQHG 361

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714
             L  E V + E ++EA ++ +  A EK+I +R      +  I  D   +KQI +N+L+N
Sbjct: 362 FQLQLEDVDVAEVIAEAAAVFRQKAEEKQIDLRVEALPGL-VIRGDRNRLKQILINLLAN 420

Query: 715 AIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           A+ +TP  GQ+ +       E + + V+DTG+G+   E+ +  + F +I  ++     GT
Sbjct: 421 ALAYTPEHGQVAVEAEEKEKEVL-IHVKDTGIGIEEKEIPRIFERFYRIDKARSRDSGGT 479

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GLGL + K +V+A+ G   + S   +GT+  I FP
Sbjct: 480 GLGLSIVKHLVEAHHGYITVASEVGRGTVFTIHFP 514


>gi|167590337|ref|ZP_02382725.1| PAS [Burkholderia ubonensis Bu]
          Length = 1361

 Score =  325 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 127/744 (17%), Positives = 253/744 (34%), Gaps = 66/744 (8%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            ++    +  +S+   + +     +     +  V   L ++    I   L    +   +  
Sbjct: 541  VNRDSEIVHLSDRAGRFLQYSGGEPSHNIIAAVRPELRLELRTAIYQALHTNRSVEARRV 600

Query: 149  LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                +  + +  +++ A P++                                       
Sbjct: 601  RIERDARSYF--VNMTARPVHDPE-----------------------------------A 623

Query: 209  EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
                     ++ +  + S  +     +    ++ L        + L++      TS E  
Sbjct: 624  NADFVLVLFDEVEDSMSSADTATADTQKDPIITQLERELQRTKEQLQSTIEQSETSTEEL 683

Query: 269  LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG--ENLTPETV 326
                E+   IN    +  +   T +   +   E L+  N    S   + G   +     +
Sbjct: 684  KASNEELQAINEELRSATEELETSKEELQSINEELTTVNAELKSKVEETGKINDDLQNLI 743

Query: 327  DKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
                I   FV  +  +    P    +      D       ++  L+  KL+D+ A     
Sbjct: 744  AANDIGTIFVDRNICIKRYTPRATDVFSIIPSDIGRSLLDITHRLEYDKLADDAAEAFDS 803

Query: 386  LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
            L   +R   +   R                                    +  D R  + 
Sbjct: 804  LRLIERELKSNDGR------------WYLARFVPYRTTEDRIDGAVLSFIDITDRRRAED 851

Query: 446  KMEIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            ++     ++  + E T D  I   + +G+I S N    ++FGY   +++ +   V     
Sbjct: 852  RLREGERRMRIVAEGTKDYAIITFDDDGVITSWNAGAERIFGYAEAEMIGQSADVLSTDE 911

Query: 505  TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL--PFSSCYSLTMHDIS 562
              +       E          E+      K+        ++ +L  P  S ++    D+ 
Sbjct: 912  DRAGHVAE-REFAEARANGRTEEERWHRRKDGTRFFASGVLSRLDEPGVSGFAKIARDLG 970

Query: 563  EWKQEKNKLSHAKKIAEK------ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            E+ Q       A+    +          + +FLA VSHE++ PL  I   +E+I      
Sbjct: 971  EFAQAAKAGRDAQIEQLRVTGEQDAERRRDEFLAVVSHELKNPLNLISASAELIARSPEA 1030

Query: 617  PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
                      A  I R+      I++DLLD+S++ +GK+++   PV + E V    S VQ
Sbjct: 1031 RQSLNISR-AAETIRRTVIGQAQIIDDLLDVSRVRTGKLSVVRTPVDMREIVRRVASAVQ 1089

Query: 677  LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
              +N++ + ++ +   +   ILADL  ++Q+  N++SNA+ FT S G++ +S     + E
Sbjct: 1090 DESNQRGLALQVAITESPVIILADLTRIEQVVWNLISNALKFT-SHGRVDVSLQVNGHAE 1148

Query: 737  VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
             +LRV DTG G+    L      F Q  +    R  G G+GL L + +V+ + G     S
Sbjct: 1149 AVLRVADTGSGIEPALLPHIFDMFRQSRDPAARRA-GLGIGLALVRELVNLHGGTVRAES 1207

Query: 797  -TPAKGTLIEIIFPLYDTSHPHDC 819
                +G    +  P +      + 
Sbjct: 1208 DGAGRGATFTVTLPTHRAHADANA 1231



 Score = 55.4 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 42/373 (11%), Positives = 88/373 (23%), Gaps = 30/373 (8%)

Query: 90   DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
            D  G +   +    +  G    +MIG     +S       +    +  + +     +   
Sbjct: 876  DDDGVITSWNAGAERIFGYAEAEMIGQSADVLSTDEDRAGHVAEREFAEARANGRTEEER 935

Query: 150  W--PIEGTNLYVPIDLAALPIYSRNREFSGFRGFG-IVHVNRVDNDPRALGKRLDKKFSH 206
            W    +GT  +    L+            G  GF  I             G+    +   
Sbjct: 936  WHRRKDGTRFFASGVLS---RLDE----PGVSGFAKIARDLGEFAQAAKAGRDAQIEQLR 988

Query: 207  LHEIKKGHSSVEKEKYDIFSQ---------QSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257
            +   +      ++    +  +          S     R      SL    A +       
Sbjct: 989  VTGEQDAERRRDEFLAVVSHELKNPLNLISASAELIARSPEARQSLNISRAAETIRRTVI 1048

Query: 258  KYP-----LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
                    LL        +     T    +   ++    +Q+ S +    L      S  
Sbjct: 1049 GQAQIIDDLLDVSRVRTGKLSVVRTPVDMREIVRRVASAVQDESNQRGLALQVAITESPV 1108

Query: 313  AYFDEGENLTPETVDKCPIPFFVYSHGNL---FYANPSFLLLTKYKSVDDIEIAGGLSTL 369
                +   +     +         SHG +      N     + +            L  +
Sbjct: 1109 IILADLTRIEQVVWNLISNALKFTSHGRVDVSLQVNGHAEAVLRVADTGSGIEPALLPHI 1168

Query: 370  LDAPKLSDNNAIKPVMLYRSD---RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
             D  + S + A +   L       R  +         + +     A   +         +
Sbjct: 1169 FDMFRQSRDPAARRAGLGIGLALVRELVNLHGGTVRAESDGAGRGATFTVTLPTHRAHAD 1228

Query: 427  NMPQNGIEPEDVD 439
                +GI  E + 
Sbjct: 1229 ANAASGILAESLH 1241


>gi|254525181|ref|ZP_05137236.1| two-component system sensor histidine kinase-response regulator
           hybrid protein [Stenotrophomonas sp. SKA14]
 gi|219722772|gb|EED41297.1| two-component system sensor histidine kinase-response regulator
           hybrid protein [Stenotrophomonas sp. SKA14]
          Length = 661

 Score =  325 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 94/514 (18%), Positives = 188/514 (36%), Gaps = 42/514 (8%)

Query: 317 EGENLTPETVDKCPIPFFV----YSHGN-----LFYANPSFLLLTKYKSVDDIEIAGGLS 367
              +L    +++    F V    +             N +F   T       ++   G  
Sbjct: 5   PEPDLHHGVLERINAGFCVIQVLFEGDRAVDYRFIEVNDAFERHTG------LKDVRGQR 58

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
             L  P   + +  +                    +          +F         P  
Sbjct: 59  MSLLEPN-HEEDWFRIYGEVARSGRPAQFEMEARALGR--------SFAVDAVRVGRPGE 109

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
                +  +    +  + ++     +  ++ +     + +++  G     N A S+ FG 
Sbjct: 110 DKVGILFFDITARKQMEVELGESEARFSALADGLPMPVWVLDERGHARFVNSAFSEFFGG 169

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
               +    +   +  +  SV  + L E L    ++++  +      + +   L +  + 
Sbjct: 170 DETRVPEDVWRGLVHPDDASVFEYELQEALK--AQRSMHALVRARRADGQWRWLEMNARP 227

Query: 548 LPFSSCYSLTMH----DISEWKQEK---NKLSHAKKIAEKES----SHKSDFLARVSHEI 596
                   + +     D++E ++ +    +L  +++ A   +      K +FLA +SHE+
Sbjct: 228 RFSRMGRFIGLAGSSPDVTERREIELAREELLQSERAARSAAENMARLKDEFLATLSHEL 287

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTPLT I+G+SE++  +           +  N I  S      +++D+LD+S +  GK+ 
Sbjct: 288 RTPLTTILGWSELLLQRVDNTSP---LYKGLNVIANSAGAQKRLISDMLDLSSMLLGKVQ 344

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716
           L  E + L+  + EAI   +L A  K + +          +L D   ++Q+  N+LSNAI
Sbjct: 345 LEVEVLDLNLLLGEAIGAQELVAEGKALDVHLQLPEQPSLVLGDATRLQQVLWNLLSNAI 404

Query: 717 HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
            FTP+ G+I +          ++ V DTG G+    L      F Q   +   R  G GL
Sbjct: 405 KFTPAEGRIDLQLQ-ADGNHWVITVHDTGDGIAPEFLHHLFSRFRQADGTTTRRHGGLGL 463

Query: 777 GLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFP 809
           GL + + +V+ + G     S     G    +  P
Sbjct: 464 GLAIVQQLVELHGGTVTAASEGHGHGATFTVRLP 497



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 38/374 (10%), Positives = 92/374 (24%), Gaps = 19/374 (5%)

Query: 54  FTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM 113
           F D            +SE  F        +   W +D  G+ + ++    +  G    ++
Sbjct: 116 FFDITARKQMEVELGESEARFSALADGLPMP-VWVLDERGHARFVNSAFSEFFGGDETRV 174

Query: 114 IGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172
                  +            + + LK Q + +        +G   +  +++ A P +SR 
Sbjct: 175 PEDVWRGLVHPDDASVFEYELQEALKAQRSMHALVRARRADG--QWRWLEMNARPRFSRM 232

Query: 173 REFSGFRGFG-IVHVNRVDNDPRALGKRLDKKFSHLHEIKKG----------HSSVEKEK 221
             F G  G    V   R     R    + ++      E              H       
Sbjct: 233 GRFIGLAGSSPDVTERREIELAREELLQSERAARSAAENMARLKDEFLATLSHELRTPLT 292

Query: 222 YDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLN 281
             +   +     +   + +       A+     K     +L      L + +    +   
Sbjct: 293 TILGWSELLLQRVDNTSPLYKGLNVIANSAGAQKRLISDMLDLSSMLLGKVQLEVEVLDL 352

Query: 282 QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGN 340
                +  G  +  ++     +  +     S    +   L     +       F  + G 
Sbjct: 353 NLLLGEAIGAQELVAEGKALDVHLQLPEQPSLVLGDATRLQQVLWNLLSNAIKFTPAEGR 412

Query: 341 LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400
           +     +             +   G++        S           R     +  +   
Sbjct: 413 IDLQLQADGNHWVIT---VHDTGDGIAPEFLHHLFSRFRQADGTTTRRHGGLGLGLAIVQ 469

Query: 401 HTIQWNRENSLAMT 414
             ++ +     A +
Sbjct: 470 QLVELHGGTVTAAS 483



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 22/246 (8%), Positives = 53/246 (21%), Gaps = 11/246 (4%)

Query: 221 KYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINL 280
            Y                 V          +      +     +      + E       
Sbjct: 35  DYRFIEVNDAFERHTGLKDVRGQRMSLLEPNHEEDWFRIYGEVARSGRPAQFEMEARALG 94

Query: 281 NQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-G 339
             +             K    +        +     E E       D  P+P +V    G
Sbjct: 95  RSFAVDAVRVGRPGEDKVGILFFDITARKQMEVELGESEARFSALADGLPMPVWVLDERG 154

Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399
           +  + N +F                    +       D+ ++    L  + +   +  A 
Sbjct: 155 HARFVNSAFSEFFGGD------ETRVPEDVWRGLVHPDDASVFEYELQEALKAQRSMHA- 207

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI---NKRKMEIEVMQLCS 456
           L   +        +      + ++    +   G  P+  + R     + ++        S
Sbjct: 208 LVRARRADGQWRWLEMNARPRFSRMGRFIGLAGSSPDVTERREIELAREELLQSERAARS 267

Query: 457 ILEATS 462
             E  +
Sbjct: 268 AAENMA 273



 Score = 48.1 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/236 (8%), Positives = 50/236 (21%), Gaps = 21/236 (8%)

Query: 94  YLKEISEELPKTIGNYAFKMIGMRLCDVSD-ILHIDPNNHIGDLLKRQNTWYGKTTLWPI 152
              E+++   +  G    +   M L + +           +           G+   + +
Sbjct: 37  RFIEVNDAFERHTGLKDVRGQRMSLLEPNHEEDWFRIYGEVAR--------SGRPAQFEM 88

Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212
           E   L     + A+ +     +  G   F                   + +FS L +   
Sbjct: 89  EARALGRSFAVDAVRVGRPGEDKVGILFF----DITARKQMEVELGESEARFSALADGLP 144

Query: 213 GHSSVEKEKYDIFSQQSPPP------HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
               V  E+       S           R+   V     +    D  +   +       +
Sbjct: 145 MPVWVLDERGHARFVNSAFSEFFGGDETRVPEDVWRGLVH--PDDASVFEYELQEALKAQ 202

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
            S+         +      +       +               +     +      
Sbjct: 203 RSMHALVRARRADGQWRWLEMNARPRFSRMGRFIGLAGSSPDVTERREIELAREEL 258


>gi|217976388|ref|YP_002360535.1| multi-sensor signal transduction histidine kinase [Methylocella
           silvestris BL2]
 gi|217501764|gb|ACK49173.1| multi-sensor signal transduction histidine kinase [Methylocella
           silvestris BL2]
          Length = 795

 Score =  325 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 129/696 (18%), Positives = 254/696 (36%), Gaps = 61/696 (8%)

Query: 160 PIDLAALPIYSRNRE-FSGFRGFGIVHVNRVDNDPRALGKRLDKKFS----HLHEIKKGH 214
            ++L A  +    RE         I          RAL +      +     +     G 
Sbjct: 80  DLELLAAVVADDLRETLKHTPAGDIPTALTDAMPSRALARGQQAMITDLTGEIIASTPGA 139

Query: 215 SSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQED 274
            ++     D      P        K   L        D L T +       + ++     
Sbjct: 140 RAIRGPLLDFLGPSQPLTI--FAEKAGVLRIILPDGADALATVRTLNQPFGQLAIVYPMS 197

Query: 275 FHTINLNQYTKKQYFGTLQNNSKESFEYL----SHRNHPSLSAYFDEGENLTPETVDKCP 330
               +    + +     +          L                +   +     + +  
Sbjct: 198 AVLADWRAASLRTGVLLVATALVLIALALAYFWQASRAREADRVCERVRDRIDTALSRGR 257

Query: 331 IPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389
              + +       Y + S   +     V +    G ++ L+           + +   ++
Sbjct: 258 CGLWDWDLARGRIYWSDSMYQILGLAPVGNFLSFGDINALVHPQDGDLAAIAEMLTASKA 317

Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449
           +            +Q  +   + +         Q        GI  +  + +    +   
Sbjct: 318 ESVD-----HAFRMQNVKGEWVWLRARAELVREQAGATPHLVGICVDITEQKTLAERTAT 372

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSV 508
             M+L   +E+ S+   + + +  ++  N    K      E ++   P+   +E+ TP +
Sbjct: 373 ADMRLRDAIESVSEAFVLWDADNQLVMCNSKFQKFHNLSSEAVISGTPYAQVMEKGTPPM 432

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568
           +     +    +  Q   +       + + L +    ++      Y     DI+  K+ +
Sbjct: 433 IQA---QTALGERPQAGARTYEARLGDGRWLQIN---ERRTKDGGYVSVGTDITALKRHE 486

Query: 569 NKLSHAKKIAEK-----------------------------------ESSHKSDFLARVS 593
            +L  +++                                        +  KS+FLA +S
Sbjct: 487 EQLMESERRLMATVADLRKSRQTLEQQAQQLADLAERYLEQKAEAETANKAKSEFLANMS 546

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HE+RTPL AIIGFSEV++ + FGPLG+ +Y++Y+N I +SG  +L +++D+LD+S++ESG
Sbjct: 547 HELRTPLNAIIGFSEVMQQETFGPLGSKKYVDYSNDIKQSGEYLLGVISDVLDMSRLESG 606

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713
           ++ L      LD AVS A++ V+  A EK I +         R  AD  + ++I   +L 
Sbjct: 607 RVRLQKSEFELDAAVSGALATVEQIAREKEITLVAEAMPG-KRANADRAAFEKILAILLR 665

Query: 714 NAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
           NA+ FTP  G++ +         + + + DTG+G+      +  +PF Q+  S     +G
Sbjct: 666 NAVKFTPKDGRVSVRARFV-QGALNVYIEDTGIGIAPAAQARLGRPFEQMGGSLDNGMKG 724

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +GLGL +A+++VD + G   I ST   GT++ +  P
Sbjct: 725 SGLGLAIARSLVDLHGGSMRIRSTVGSGTIVLVHLP 760


>gi|22298419|ref|NP_681666.1| two-component hybrid sensor and regulator [Thermosynechococcus
           elongatus BP-1]
 gi|22294598|dbj|BAC08428.1| two-component hybrid sensor and regulator [Thermosynechococcus
           elongatus BP-1]
          Length = 1035

 Score =  325 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 95/385 (24%), Positives = 178/385 (46%), Gaps = 18/385 (4%)

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
             +    I  +    R  ++ +E    +  S+ E    GI  ++ +G     N+ + +L 
Sbjct: 334 AAVAVLLITRDRQRKRSLQKLLETSNARFRSVSEMAPVGIFTLDAQGQPTFLNQRLLQLL 393

Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
                +  ++ +   L       +           +        + +      ++ RII 
Sbjct: 394 QVHNLEEAQQQWIERLHPEDRDRVLKAWAACQQKRVPFHERFRIVHNDSSSHWINARIIP 453

Query: 546 KKLP-FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
            +    +  +  T  DIS+  Q++  L  A++ AE+ S  KS+FLA +SHEIRTP+ AII
Sbjct: 454 LQESSATDSFVGTWEDISQMMQQQELLEVARQAAEEASRAKSEFLATMSHEIRTPMNAII 513

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           G + ++ +       NP+  E+ N I  SG+ +L ++ND+LD SKIESGK+ L   P +L
Sbjct: 514 GLTGLLLDTPL----NPQQQEFVNTIRLSGDALLGVINDILDFSKIESGKLELESYPFNL 569

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG 723
              V E + L+   A E+ + +     + +P  ++ D+  ++Q+ +N++ NAI FT  G 
Sbjct: 570 RTCVEEVLDLLASRAAEREVELAAHIDSGVPCAVIGDMGRLRQVLVNLIGNAIKFTQKG- 628

Query: 724 QIIISTTHTSNEE-----------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
            + +                     +  ++DTG+G++   + +  KPF Q+  S   +  
Sbjct: 629 NVTLYVKAKPMPMSQYEFMPSYYSYLFAIQDTGIGISAAGMNRLFKPFSQVDASTTRQYG 688

Query: 773 GTGLGLPLAKAMVDANMGKFYIFST 797
           GTGLGL + + +V+   G+ ++ S 
Sbjct: 689 GTGLGLVICQRLVERMGGQIWVESK 713


>gi|309790612|ref|ZP_07685166.1| PAS/PAC sensor hybrid histidine kinase [Oscillochloris trichoides
           DG6]
 gi|308227340|gb|EFO81014.1| PAS/PAC sensor hybrid histidine kinase [Oscillochloris trichoides
           DG6]
          Length = 973

 Score =  325 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 116/666 (17%), Positives = 227/666 (34%), Gaps = 56/666 (8%)

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEK-EKYDIFSQQSPPPHLRMKNKVSSLTE 245
              +   R  G +L +       +     ++       +  + +P       +  +    
Sbjct: 73  ATAERLLRVAGCQLPEGAREELHLSPQVLAMLDMRGALVQGESAPEWANVATSMNTHGPL 132

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
                    +     +L      L   +    INL     +      +  +      LSH
Sbjct: 133 LVLPIPMPPQPHALLILALPNGPLAPHQHLALINLVSDAVRALDRIARAEAIWHDASLSH 192

Query: 306 RNHPSLSA-YFDEGENLTPETVDKCPIPFFVY-------SHGNLFYANPSFLLLTKYKSV 357
            N    +     +   L    +D+               + G +   N     L    ++
Sbjct: 193 SNRILAAVNAVTDIGLLYSNVIDQMLNAILNQILNALNLAAGAILIYNDESEDLEVASAL 252

Query: 358 --DDIEIAGGLSTLLDAPKLSDNNAIKP-------------------VMLYRSDRTCIAA 396
                     L +L  A  L  + A                      +    S       
Sbjct: 253 VSSHHGQQSDLISLWQAAFLPTSIAEARKAANQGQVLASSSSEDQFFLSHLHSLGVTQLI 312

Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV-DTRINKRKMEIEVMQLC 455
           S  L    W       +            + +     +     +      +   +  +  
Sbjct: 313 SVPLLAGGWLTGVLQVVVCDANPINQYQSQILHILARQTAVAIENARLFAQTRNDQERTS 372

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF-----LEQNTPSVMN 510
           ++++AT+D I +++    ++  NR     FG    ++  K               P   +
Sbjct: 373 AVVDATNDAILMLDERRRVMIINRRARFFFGISERELQEKDLEQLSIIFNRIFEDPPRFH 432

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEK 568
            +L ++L     + +         E +LL                  L   DI+  ++ +
Sbjct: 433 GWLRQLLRSPTERVVA-EFRIIRPEARLLQCFSAPVMDLHDRYLGRILVFRDITREREVE 491

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK--NQRFGPLGNPRYIEY 626
                           KS+F++ VSHE+RTPLT+I G  +++    +        R  + 
Sbjct: 492 --------------RMKSEFVSNVSHELRTPLTSIQGTLQLVLGPKRSGSEGLPQRARDL 537

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
            N    +   ++ ++ND+LD++KIE G++ L  E +S+++    A++ +  +AN + + I
Sbjct: 538 LNVSLSNTERLIRLINDILDVAKIEQGRIELRRETLSVEDLCRAAVAEMHAFANHRGMSI 597

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
                  +P +LAD     QI +N+LSNAI F+  G Q ++ +  T    V   VRD G 
Sbjct: 598 DMDLQPGLPSVLADRDRSTQILINLLSNAIKFS-VGSQSVLLSARTDGSMVYFSVRDWGR 656

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+     E+  + F QI +S      GTGLGL ++KA+V+   G+ ++ S   +G+    
Sbjct: 657 GIDLENQERIFQKFVQIDSSATRDVGGTGLGLSISKALVEEQGGRIWLESELGRGSTFTF 716

Query: 807 IFPLYD 812
             P+  
Sbjct: 717 TLPVAP 722


>gi|304393603|ref|ZP_07375531.1| PAS/PAC sensor signal transduction histidine kinase [Ahrensia sp.
           R2A130]
 gi|303294610|gb|EFL88982.1| PAS/PAC sensor signal transduction histidine kinase [Ahrensia sp.
           R2A130]
          Length = 814

 Score =  325 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 120/549 (21%), Positives = 225/549 (40%), Gaps = 49/549 (8%)

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDIE 361
           +         + + E        + +     + +         +PS   +          
Sbjct: 256 VQGARTRETESLYFETNARFDTALARGRCGLWDWDLSRGSIVWSPSMHQMLGRAGRSRAM 315

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
             G L+ LL      D+  +  +       +      R   +  +         +  E  
Sbjct: 316 GYGELAELLH----PDDRNLLQIANETFQESSRQIDHRFRILHASGG--WVSMRLRAELV 369

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
           +         GI  +  +    KR+     ++L   ++  S+   + + +  ++  N   
Sbjct: 370 HYRGAVPHLIGIAVDVSEQEALKRQSRDADIRLREAIDNISEAFVLWDAKERMVLCNGKY 429

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
            +LF  P   I  +      +           +++ +   ++           + +   +
Sbjct: 430 QQLFNLPSSAI--RHGVTKQDVAAIRKAPVMRSQVNTDRNQKHHSNTFEAQLDDGRWFQI 487

Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH---------------------------- 573
                             DI++ K+ ++KL                              
Sbjct: 488 SERPTL---DGGAVSVGTDITQIKRNQSKLEDSEREHLATIVELRKMQQNLVAFANEADD 544

Query: 574 -------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
                   +K A++ +  KS FLA +SHE+RTPL AIIGFS++++   FGPLGN +Y EY
Sbjct: 545 QRLLADEQRKQADEANKSKSQFLANMSHELRTPLNAIIGFSDIMREGMFGPLGNEKYTEY 604

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
           AN I  SG  +L ++ND+LD+SKIE+G+M ++ E +++ + + E + ++   A++  + +
Sbjct: 605 ANDIRSSGGFLLGVINDVLDMSKIEAGRMQIYPEELAVSDLLQETLRIIAAQADDGELQV 664

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
            T     +  I+AD R+VKQ+ +N+LSNA+ FTP GG I +S     +  V + + D+G+
Sbjct: 665 TTEIETGL-DIIADRRAVKQVLINLLSNAVKFTPKGGSIQVSARRLDDN-VEMEILDSGI 722

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G++   LE+   PF Q  +       G+GLGL +AK++ + + G   I S    GT + +
Sbjct: 723 GISQDALERIGLPFEQAASELTRDHVGSGLGLAIAKSLAELHGGSVDISSIEGIGTTVLV 782

Query: 807 IFPLYDTSH 815
             PL  TSH
Sbjct: 783 RLPLDCTSH 791


>gi|281356192|ref|ZP_06242685.1| multi-sensor hybrid histidine kinase [Victivallis vadensis ATCC
            BAA-548]
 gi|281317561|gb|EFB01582.1| multi-sensor hybrid histidine kinase [Victivallis vadensis ATCC
            BAA-548]
          Length = 1318

 Score =  325 bits (834), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 97/424 (22%), Positives = 186/424 (43%), Gaps = 18/424 (4%)

Query: 396  ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK---MEIEVM 452
                   ++ N   +  +      +      +        + ++  I +R    +  +  
Sbjct: 752  VGFYAAGLRQNGRLTGFLLLGFRSEEKFTGTDAALVKACADLLELAITRRNQDMLVRQKE 811

Query: 453  QLCSIL-EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
            ++ SIL +  +  + + +  G +LS N  V K  G   E++L++P      ++     + 
Sbjct: 812  RMQSILLDNMNIPVLLFDTAGRMLSMNNEVVKALGLSAEEVLKRPCYQVFCRHDTYPRHC 871

Query: 512  YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571
             + + L    +        G   E   + +     K+           D++  K+ + + 
Sbjct: 872  PVQQALRTGEKAFHSFSLNGHDYEVTAIPVLDEAGKVVN---VLECAVDVTRQKELQRRT 928

Query: 572  SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
            + A ++  +    KS+FLA +SHEIRTPL +IIGFSE+++        +    +YA  I+
Sbjct: 929  AEALELTRQAYQTKSNFLAMMSHEIRTPLNSIIGFSELLQAT---SPDSEELHDYAANIN 985

Query: 632  RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
             +G  +L ++ND+L+IS+ E+  + +  E V  +  ++E  S+ +  A +K +  R    
Sbjct: 986  TAGQTLLQLINDVLEISRFEADLVEIPLEWVDFNRLLAEIGSIFKHMARKKGLDFRIEAP 1045

Query: 692  NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS----NEEVILRVRDTGVG 747
              +P I  +   ++QI LN++ NA+ FT  GG I +S    +    +  + + VRDTG+G
Sbjct: 1046 AELPEIYLNDARLRQILLNLVGNAVKFTEKGG-ISVSADFRATDSGHGRLEITVRDTGIG 1104

Query: 748  MTNYELEKAMKPFGQIPNS---QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
            +      +   PF Q             GTGLGL + K ++D   G   + S P  G+  
Sbjct: 1105 IDPGLHSRIFDPFVQADEGAVRGNRTTNGTGLGLSIVKRLLDKMGGSVTLESIPGTGSTF 1164

Query: 805  EIIF 808
             I+F
Sbjct: 1165 RILF 1168



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/282 (10%), Positives = 69/282 (24%), Gaps = 27/282 (9%)

Query: 313 AYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
               E + +        P+   V             +            +   LS     
Sbjct: 378 RQAREKDRVNAAIFRSLPLQITVLDRNLNLLVRHRDVNQPPVPYRQATTLLDSLSRQTLE 437

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
                      V         ++          + E    + +            +    
Sbjct: 438 QITP------QVEQVFRTGRSVSFD-----YDSDGEWRRMVIYRLPVSIMGRECVLC--- 483

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG--IILSTNRAVSKLFGYPVE 490
           I       R  + +       L +IL+     +   + +     +  NR   ++ G P +
Sbjct: 484 ISLNIDRERKAEEQTHTANRLLQAILDHIPAIVQGKDPDDDYRYVFWNRTSERVSGLPEK 543

Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK---LLSLRIIIKK 547
            +L K     +             ++      Q +E+       +       ++R  ++ 
Sbjct: 544 TVLGKR-DCDIPGMAEIADRLREEDLAVPPDGQLVERTDTYPYSDGTVGYFHAVRRNVRI 602

Query: 548 LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
               S      ++I+E    + +        E+    +SDFL
Sbjct: 603 DEHHSLLLTMANNITEQHILEQE-------KERLLRRQSDFL 637



 Score = 44.6 bits (104), Expect = 0.065,   Method: Composition-based stats.
 Identities = 31/378 (8%), Positives = 77/378 (20%), Gaps = 44/378 (11%)

Query: 191 NDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK 250
              R   +     F  L                      PP   R    +   +      
Sbjct: 378 RQAREKDRVNAAIFRSLPLQITVLDRNLNLLVRHRDVNQPPVPYRQATTLLD-SLSRQTL 436

Query: 251 DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310
           + +    +    T    S     D       +    +   ++          L+      
Sbjct: 437 EQITPQVEQVFRTGRSVSFDYDSDG---EWRRMVIYRLPVSIMGRECVLCISLNIDRERK 493

Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYSHG---NLFYANPSFLLLTKYKSVDDIEIAG--- 364
                     L    +D  P               + N +   ++       +       
Sbjct: 494 AEEQTHTANRLLQAILDHIPAIVQGKDPDDDYRYVFWNRTSERVSGLPEKTVLGKRDCDI 553

Query: 365 -----GLSTLLDAPKLSDNN---AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
                    L +       +     +      SD T     A    ++ +  +SL +T  
Sbjct: 554 PGMAEIADRLREEDLAVPPDGQLVERTDTYPYSDGTVGYFHAVRRNVRIDEHHSLLLTMA 613

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINK---------RKMEIEVMQLCSILEATSDGIAI 467
                    E   +  +  +    +  +            E     + +ILE  + G   
Sbjct: 614 NNITEQHILEQEKERLLRRQSDFLKQEQLWNSCLTKLAANEDYAETMNAILEQFA-GFFG 672

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
                       A         ++  +   T    +         +  + +        +
Sbjct: 673 ------------AGLACLYEYAQEDSQVNITHLWSEPELQTGTEGIRRLQAWRESPFAHR 720

Query: 528 ----ITLGSTKEEKLLSL 541
                 +   +E+  + +
Sbjct: 721 LMQKEVVCLRREQDFVPV 738



 Score = 43.5 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 35/509 (6%), Positives = 122/509 (23%), Gaps = 48/509 (9%)

Query: 90   DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN-HIGDLLKRQNTWYGKTT 148
            D  G +  ++ E+ K +G  A +++      V       P +  +   L+     +    
Sbjct: 829  DTAGRMLSMNNEVVKALGLSAEEVLKRPCYQVFCRHDTYPRHCPVQQALRTGEKAFH--- 885

Query: 149  LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                  +      ++ A+P+     +        +        + +       +     +
Sbjct: 886  ----SFSLNGHDYEVTAIPVLDEAGKVVNVLECAV--DVTRQKELQRRTAEALELTRQAY 939

Query: 209  EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
            + K    ++   +              ++       E + +  ++    +  L    +  
Sbjct: 940  QTKSNFLAMMSHEIRTPLNSIIGFSELLQATSPDSEELHDYAANINTAGQTLLQLINDVL 999

Query: 269  LPEQEDFHTINLNQYTKK-----QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
               + +   + +              G++  +             P+        +    
Sbjct: 1000 EISRFEADLVEIPLEWVDFNRLLAEIGSIFKHMARKKGLDFRIEAPAELPEIYLNDARLR 1059

Query: 324  ETVDKC-PIPFFVYSHGNLFYANPSFLLLTKYKSVDD------IEIAGGLSTLLDAPKLS 376
            + +             G +  +       + +  ++       I I  GL + +  P + 
Sbjct: 1060 QILLNLVGNAVKFTEKGGISVSADFRATDSGHGRLEITVRDTGIGIDPGLHSRIFDPFVQ 1119

Query: 377  DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
             +          ++ T +  S     +     +    +        +             
Sbjct: 1120 ADEGAVRG-NRTTNGTGLGLSIVKRLLDKMGGSVTLESIPGTGSTFRILFEQLSVRERHT 1178

Query: 437  DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
            D  +       E              +   +++     +  N    ++    +E +    
Sbjct: 1179 DTGSPQAFSAAEF----------NDPEPAWVVDD----VPMN---CRVLAAMLEKLN--- 1218

Query: 497  FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556
                ++    S     L  I   +  + +             L+  I       +     
Sbjct: 1219 ----IKAEALSDPKTALERIRGGEHPKLIFSDMWMPDLNGAELAAAIRRLPAGGTIRIIA 1274

Query: 557  TMHDISEWKQEKNKLSHAKKIAEKESSHK 585
               D ++ +   +       + +  +  K
Sbjct: 1275 VTAD-TDSRHNFDMSVFDMILTKPVNREK 1302



 Score = 41.2 bits (95), Expect = 0.73,   Method: Composition-based stats.
 Identities = 26/284 (9%), Positives = 76/284 (26%), Gaps = 21/284 (7%)

Query: 174 EFSGFRGFGIV---HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP 230
           +F+GF G G+       + D+         + +     E  +   +  +  +     Q  
Sbjct: 666 QFAGFFGAGLACLYEYAQEDSQVNITHLWSEPELQTGTEGIRRLQAWRESPFAHRLMQKE 725

Query: 231 PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG 290
              LR +     +          L    +      ++          + L   +++++ G
Sbjct: 726 VVCLRREQDFVPVNPEVVANFRHLDFVGFYAAGLRQNGR----LTGFLLLGFRSEEKFTG 781

Query: 291 TLQNNSKESFEYLSHR-NHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSF 348
           T     K   + L       +      + E +    +D   IP  ++   G +   N   
Sbjct: 782 TDAALVKACADLLELAITRRNQDMLVRQKERMQSILLDNMNIPVLLFDTAGRMLSMNNEV 841

Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
           +      + + ++       +         +      L   ++   + S   H  +    
Sbjct: 842 VKALGLSAEEVLKRP--CYQVFCRHDTYPRHCPVQQALRTGEKAFHSFSLNGHDYE---- 895

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
                        ++  + +       +    +  +R+    + 
Sbjct: 896 ------VTAIPVLDEAGKVVNVLECAVDVTRQKELQRRTAEALE 933


>gi|220924442|ref|YP_002499744.1| histidine kinase [Methylobacterium nodulans ORS 2060]
 gi|219949049|gb|ACL59441.1| histidine kinase [Methylobacterium nodulans ORS 2060]
          Length = 900

 Score =  325 bits (834), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 124/666 (18%), Positives = 239/666 (35%), Gaps = 42/666 (6%)

Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKE--KYDIFSQQSPPPHLRMKNKV 240
           I+              R     S      +  ++  K      +    S  P +R    V
Sbjct: 102 ILRDTAGQEHVNTQVPRGSPLPSLPRVTDRAVAATGKPTVSDLLIGAVSRQPEVRAGVPV 161

Query: 241 SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF 300
               E            +   L SE    P      T        +      Q   +   
Sbjct: 162 RLRGEIAYVLSASFPAARIGALLSEAGIAPPYSASVTDRTGTIIGRSVATD-QATGRPLP 220

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDI 360
            +             +        T  +  +  ++ + G    A  + L  + + S+  +
Sbjct: 221 GFAETVGDSGSWTGSNLLGVPVFGTYRRSALSGWIVTVGIEQQALQAPLYASLWISIPIL 280

Query: 361 EIAG----GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
              G      S L+    L   N +       +D   I A            N +  T  
Sbjct: 281 IGLGLTALAASGLMARRILLAKNRLAEGARALADGRVIDAPVT----PVREVNEIGATLA 336

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476
                        Q      +       R++  +   L   L+A   G+ +++  G++  
Sbjct: 337 AASVRLHQQAEALQAANRELETRVAARTRELAEKEALLTMTLDAMDQGLVMVDARGVVAV 396

Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN-----HYLTEILSLDLRQTLEKITLG 531
           TNR  +++       +  +P    + +              +   L  D     +     
Sbjct: 397 TNRRFAEILDLDPAFLASRPTDEAMSRALDEAGAFASAGPAVRAGLQADDLAPPDARCER 456

Query: 532 STKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL-------SHAKKIAEKESSH 584
                ++L +                  D++  ++ +  L         A++ AE  S+ 
Sbjct: 457 VRPNGQVLEVTSTAT---ADGGILRIYTDVTARRKAEAALAEAHRIAQVARREAEAGSAA 513

Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
           KS+FLA +SHEIRTPLT ++G+++++  Q       P +      I  +G  +L IV+D+
Sbjct: 514 KSEFLATMSHEIRTPLTGVLGYADLLTAQSDLA---PEHRRLVGRIRSAGEALLTIVDDV 570

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRS 703
           LD SKIE+G++ L  +P S  + V EA++LV+  A+ K++ +       IP  ++ D+  
Sbjct: 571 LDFSKIEAGEITLDPKPFSPAQLVDEALALVRAAADRKQLALSARIDPAIPERLVGDVGR 630

Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEE------VILRVRDTGVGMTNYELEKAM 757
           ++Q+ LN+L+NA+ FT +G  + ++              + + V DTG+G+   +  +  
Sbjct: 631 LRQVLLNLLNNAVKFTRAGS-VTVTVACEPAGPDAQDCPIRICVTDTGIGIPEEKRGRLF 689

Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF-----PLYD 812
           + F Q+  S Q   EGTGLGL +++ +++A  G+  + S   +G+           PL  
Sbjct: 690 QRFSQVDGSIQRHYEGTGLGLAISRRLIEAMNGRIDVDSRAGEGSTFWFALKLAKVPLEP 749

Query: 813 TSHPHD 818
           +    +
Sbjct: 750 SKEAEE 755



 Score = 37.7 bits (86), Expect = 9.2,   Method: Composition-based stats.
 Identities = 24/264 (9%), Positives = 65/264 (24%), Gaps = 25/264 (9%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +DA G +   +    + +      +      D +    +D                    
Sbjct: 388 VDARGVVAVTNRRFAEILDLDPAFLASRP-TDEAMSRALDEAGAFASAGPAVRAGLQADD 446

Query: 149 LWPIEGTNLYVP-----IDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
           L P +     V      +++ +                GI+ +       R     L + 
Sbjct: 447 LAPPDARCERVRPNGQVLEVTSTATADG----------GILRIYTDVTARRKAEAALAE- 495

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY---P 260
              + ++ +  +         F              V    +    + D+    +     
Sbjct: 496 AHRIAQVARREAEAGSAAKSEFLATMSHEIRTPLTGVLGYADLLTAQSDLAPEHRRLVGR 555

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
           + ++ E+ L   +D    +  +  +        + ++   E L+     +          
Sbjct: 556 IRSAGEALLTIVDDVLDFSKIEAGEITLDPKPFSPAQLVDEALALVRAAADRKQLALSAR 615

Query: 321 LTPETVDKCPIPFFVYSHGNLFYA 344
           + P   ++      V   G L   
Sbjct: 616 IDPAIPERL-----VGDVGRLRQV 634


>gi|312116341|ref|YP_004013937.1| PAS/PAC sensor hybrid histidine kinase [Rhodomicrobium vannielii
           ATCC 17100]
 gi|311221470|gb|ADP72838.1| PAS/PAC sensor hybrid histidine kinase [Rhodomicrobium vannielii
           ATCC 17100]
          Length = 663

 Score =  325 bits (834), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 115/503 (22%), Positives = 204/503 (40%), Gaps = 36/503 (7%)

Query: 327 DKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
           D       V    G   +AN  F  LT   + +        S+LL +P ++ N     ++
Sbjct: 17  DSMQDAVVVTDETGKFLWANAGFARLTGVPAHEIAARTP--SSLLQSPGMNRNAVAAALL 74

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV-----DT 440
                +       +   +   R   +          +          I+ +       D 
Sbjct: 75  HALEAKEP----VKTQVLGERRGIPVWFDLEVMPLLDADAHIRGFVAIQRDITFCVGRDC 130

Query: 441 RINKRKMEIEVM--QLCSILEATSDGIAIINREGIILSTNRAVSKLF---------GYPV 489
            + K  +       +L + +EA SDG AI +    +L  N A +KL          G   
Sbjct: 131 DVTKAVLGSSKAEGRLRAAVEAISDGFAIYDENDRLLIANEAFTKLHEGIEDALGPGASF 190

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
           ED+LR      L        + +L   L+                    +S      K  
Sbjct: 191 EDLLRSTLARGLIDIGCEDPDRWLDRQLTASKHAFS--EIHMRFANGCWMS---RRHKRM 245

Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
            ++       DIS  K+++ +L  A+  AE     KS FL  +SHE+RTP+  IIGF+E+
Sbjct: 246 ENNETVRIWTDISSLKRQQAELEDARARAEAADRAKSHFLTNMSHEMRTPMNGIIGFNEL 305

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           +         +    +YA  I  S   ++ +++++LD+ KIE G + +   P  L++ + 
Sbjct: 306 LLQGNL----SDTQRDYATLIQSSSKSLMSLIDEILDLGKIERGTLEIQSAPFKLNQLI- 360

Query: 670 EAISLVQLYANEKRILIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
            A   +Q  A+EK + ++ S    +    + D+  ++QI +N+L NAI FT +G ++ +S
Sbjct: 361 SAARSLQALADEKALQLKVSSTLPSQTIAIGDVERIRQILVNLLGNAIKFTETG-EVTLS 419

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
            +  +N  +   V DTG G+    L K    F Q  +    + +G+GLGL +AK + +  
Sbjct: 420 ISAENNG-LAFSVNDTGPGIAPDRLRKIFNRFYQADDLCSGKVKGSGLGLAIAKELTELM 478

Query: 789 MGKFYIFSTPAKGTLIEIIFPLY 811
            G   + S   +G+   +  PL+
Sbjct: 479 GGTITVESERGEGSTFLVWLPLW 501



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/206 (12%), Positives = 55/206 (26%), Gaps = 9/206 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            D  G     +    +  G  A ++       +     ++ N     LL          T
Sbjct: 26  TDETGKFLWANAGFARLTGVPAHEIAARTPSSLLQSPGMNRNAVAAALLHALEAKEPVKT 85

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRG------FGIVHVNRVDNDPRALGKRLDK 202
               E   + V  DL  +P+   +    GF        F +     V        K  + 
Sbjct: 86  QVLGERRGIPVWFDLEVMPLLDADAHIRGFVAIQRDITFCVGRDCDVTKAVLGSSKA-EG 144

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
           +     E      ++  E   +         L     +       A  +D+L++     L
Sbjct: 145 RLRAAVEAISDGFAIYDENDRLLIANEAFTKLH--EGIEDALGPGASFEDLLRSTLARGL 202

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQY 288
                  P++     +  +++   + 
Sbjct: 203 IDIGCEDPDRWLDRQLTASKHAFSEI 228


>gi|319651062|ref|ZP_08005196.1| sensor protein [Bacillus sp. 2_A_57_CT2]
 gi|317397232|gb|EFV77936.1| sensor protein [Bacillus sp. 2_A_57_CT2]
          Length = 607

 Score =  325 bits (834), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 88/369 (23%), Positives = 162/369 (43%), Gaps = 23/369 (6%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +      E E  +L S+L   +DG+   +R+G ++  N   +K+     E +L  P    
Sbjct: 252 QEAHATTEGERRKLSSVLSYMTDGVIATDRKGRVILINEPAAKMLNVSRETVLSSPIVSL 311

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
           L           L E  S+ L  + +  TL            +I K+  F +     +HD
Sbjct: 312 LGLEEDYNFEELLNERDSVILDYSSKSKTLILRAN-----FSVIQKETGFVNGLITVLHD 366

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I+E ++   +              + +F+A VSHE+RTPLT +  + E +    +     
Sbjct: 367 ITEQEKIDME--------------RREFVANVSHELRTPLTTMRSYLEALAEGAWR--DE 410

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
                + +        ++ +VNDLL +SK++S    L  +        +  I   +    
Sbjct: 411 EIAPNFLDVTQNETERMIRLVNDLLQLSKMDSKDYRLTKDWTDFIFFYNRIIDRFE-MTK 469

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
           ++ +       ++   +  D   + Q+  NI+SNA+ ++P GG++  S     +E +++ 
Sbjct: 470 QQNVTFERKLPDHSAFVEIDEDKLTQVLDNIISNALKYSPEGGKVTFSIE-EKDEFIVVS 528

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V D GVG+    +++  + F ++  ++  +  GTGLGL +AK MV+A+ GK +  ST  K
Sbjct: 529 VSDQGVGIPKENIDQIFERFYRVDKARTRKLGGTGLGLAIAKEMVEAHGGKIWAASTEGK 588

Query: 801 GTLIEIIFP 809
           GT I    P
Sbjct: 589 GTTISFSLP 597


>gi|325960004|ref|YP_004291470.1| multi-sensor signal transduction histidine kinase [Methanobacterium
            sp. AL-21]
 gi|325331436|gb|ADZ10498.1| multi-sensor signal transduction histidine kinase [Methanobacterium
            sp. AL-21]
          Length = 1077

 Score =  325 bits (834), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 118/792 (14%), Positives = 255/792 (32%), Gaps = 110/792 (13%)

Query: 85   FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144
            F+W  D  G +   +    K  G    + IG    D+              +LK+   W 
Sbjct: 315  FSWEYD-DG-IISWNVGAEKLYGFSNEEAIGHVSHDLLKTNFPIEFKDFLKILKKNGNWA 372

Query: 145  GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIV----HVNRVDNDPRALGKRL 200
            G+      +G  + V          SR +    F G  IV               L K  
Sbjct: 373  GELIHTTRDGRLIVVE---------SRQQLIKDFSGKLIVIETNRDITQRKKMEQLLKDS 423

Query: 201  DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP--------PHLRMKNKVSSLTEYYAHKDD 252
            ++K+  + +  +           I               P+  + N + +L +    +DD
Sbjct: 424  EEKYRTILDNLQDAYIQADSNGIITMVSPSAASMYNYDSPNKMIGNYIKNLYKNQLDRDD 483

Query: 253  VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
            +L+  +      +  S+  ++D  T +++  ++  Y    Q    E F         +  
Sbjct: 484  LLENLEKLGNVEDYESVALRKDGTTFDVSLNSQFLYDNEGQIQGTEVFVRD-ITERKNAE 542

Query: 313  AYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
                  E    + ++      +      N  + N +      Y+S + +      +    
Sbjct: 543  KALRVSEQRISDMIESISDYIYAIDSDWNFIFVNETAANDVGYESSELLGKNIWSAV--- 599

Query: 372  APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
              K+               R          T+  +      +           P      
Sbjct: 600  -DKVVGTELETNFREAMDKREIKLFDWE--TVYTDSYKEFTVY----------PSAEGIT 646

Query: 432  GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
                +    +  +++++IE  +L +ILE     + I+  +G I   N+    ++G     
Sbjct: 647  VYGKDITKRKKAEKQLKIENERLETILETNPSAVIIVEADGNISYINQRAKDIYGIN--- 703

Query: 492  ILRKPFTVFLEQNTPSVMNHYLTEI------LSLDLRQTLEKITLGSTKEEKLLSLRIII 545
            I     +  + +     ++     +       +L  +    +  +    +  ++ +    
Sbjct: 704  ITGMDLSTAIAKVKAKKIDGSEYSVGDGPTGRALKGQMVRNEEMILEQPDGTVIPILGSA 763

Query: 546  KKLPFSSCY----SLTMHDISEWKQEK--------------NKLSHAKKIAEK------- 580
              +           +   DI++ KQE+               +LS   +  +        
Sbjct: 764  APIYNLENQIISAVVIFDDITQIKQEEWRKQKMLEKEQQLTEELSATNEELQATTEELKT 823

Query: 581  ---------------------ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
                                  +     F    SH+++ PL  +  F++ +  +R+    
Sbjct: 824  SNEDLILAQNSLMEMVTKLKTSNKELEQFAYVASHDLQEPLRMVASFTQ-LLERRYKNHL 882

Query: 620  NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
            +    +Y ++I      + D+++DLL  S++ +         V +   + +    ++   
Sbjct: 883  DDDANDYIDFIVEGAQRMKDLIDDLLAFSRLNTEVHKFEPILVEVA--LDDVSFNLKSSI 940

Query: 680  NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF---TPSGGQIIISTTHTSNEE 736
             E    I       +P I  D   ++Q+  N++SNAI F   TP   +I +S     ++E
Sbjct: 941  EENNATITYD---PLPTINGDPSQIRQLFQNLISNAIKFHGDTPP--KIHVS-AQELDDE 994

Query: 737  VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
             I  V D G+G+     E+    F ++    +   EGTG+GL + K +V+ + GK ++ S
Sbjct: 995  CIFGVTDNGIGINQNHQEQIFSIFKRLH--TRKDYEGTGIGLAICKRIVERHGGKIWVES 1052

Query: 797  TPAKGTLIEIIF 808
                G+      
Sbjct: 1053 EEGNGSTFYFTI 1064



 Score =  139 bits (351), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 54/498 (10%), Positives = 138/498 (27%), Gaps = 32/498 (6%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN--HIGDLLKRQNTWYGKTT 148
             G L   +    +  G    ++  +   D    +         + +L +       +  
Sbjct: 196 PDGRLGLFNHAFEELTGYTKQELNTIDWSDALTPVEWREKESQKLDELHRTGQPVRYEKE 255

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +G+   VPI+L      + +     +  F  +          A  KR        +
Sbjct: 256 YVRKDGS--RVPIELFVDINMAADGNPEFYYSF--ISDITKRQKDEADLKRQAALLDVSY 311

Query: 209 EI------KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
           E         G  S       ++   +      + + +         KD +   +K    
Sbjct: 312 EAIFSWEYDDGIISWNVGAEKLYGFSNEEAIGHVSHDLLKTNFPIEFKDFLKILKKNGNW 371

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
             E            +   Q   K + G L                  +     + E   
Sbjct: 372 AGELIHTTRDGRLIVVESRQQLIKDFSGKL----IVIETNRDITQRKKMEQLLKDSEEKY 427

Query: 323 PETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
              +D          S+G +   +PS   +  Y S + +     +  L       D+   
Sbjct: 428 RTILDNLQDAYIQADSNGIITMVSPSAASMYNYDSPNKMIGNY-IKNLYKNQLDRDD--- 483

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
               L  +                    +  ++       +   +         +  + +
Sbjct: 484 ----LLENLEKLGNVEDYESVALRKDGTTFDVSLNSQFLYDNEGQIQGTEVFVRDITERK 539

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
             ++ + +   ++  ++E+ SD I  I+ +   +  N   +   GY   ++L K     +
Sbjct: 540 NAEKALRVSEQRISDMIESISDYIYAIDSDWNFIFVNETAANDVGYESSELLGKNIWSAV 599

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDI 561
           ++   + +     E +     +  +  T+ +   ++           P +   ++   DI
Sbjct: 600 DKVVGTELETNFREAMDKREIKLFDWETVYTDSYKEF-------TVYPSAEGITVYGKDI 652

Query: 562 SEWKQEKNKLSHAKKIAE 579
           ++ K+ + +L    +  E
Sbjct: 653 TKRKKAEKQLKIENERLE 670



 Score = 81.2 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 55/361 (15%), Positives = 115/361 (31%), Gaps = 49/361 (13%)

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
                       L  +D   +    +L          L +        +   E   +N I
Sbjct: 100 GFGPGLVATVTSLSVADIWILPPQGQLSIASTTDLVGLILFLTFGILISAVAELYHRNRI 159

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
           +    D   + R+   E   L +ILE +S   AI   +G +   N A  +L GY  +++ 
Sbjct: 160 KAVAYDKENSLREARKEKEFLANILEHSSQPFAIGFPDGRLGLFNHAFEELTGYTKQELN 219

Query: 494 RKPFTVFLEQ-NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
              ++  L         +  L E+         EK  +        + L + I      +
Sbjct: 220 TIDWSDALTPVEWREKESQKLDELHRTGQPVRYEKEYVRKDGSRVPIELFVDINMAADGN 279

Query: 553 C--YSLTMHDISEWKQEKNKLSHAKKIAEKESSHK---------------SDFLARVSHE 595
              Y   + DI++ ++++  L     + +                     ++ L   S+E
Sbjct: 280 PEFYYSFISDITKRQKDEADLKRQAALLDVSYEAIFSWEYDDGIISWNVGAEKLYGFSNE 339

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
                 AI   S  +    F       + ++   + ++GN   ++++   D      G++
Sbjct: 340 -----EAIGHVSHDLLKTNFPI----EFKDFLKILKKNGNWAGELIHTTRD------GRL 384

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA----NNIPRILAD-LRSVKQIALN 710
                       V E+   +    + K I+I T+        + ++L D     + I  N
Sbjct: 385 -----------IVVESRQQLIKDFSGKLIVIETNRDITQRKKMEQLLKDSEEKYRTILDN 433

Query: 711 I 711
           +
Sbjct: 434 L 434


>gi|229099892|ref|ZP_04230815.1| hypothetical protein bcere0020_51100 [Bacillus cereus Rock3-29]
 gi|229118955|ref|ZP_04248300.1| hypothetical protein bcere0017_52180 [Bacillus cereus Rock1-3]
 gi|228664480|gb|EEL19976.1| hypothetical protein bcere0017_52180 [Bacillus cereus Rock1-3]
 gi|228683507|gb|EEL37462.1| hypothetical protein bcere0020_51100 [Bacillus cereus Rock3-29]
          Length = 613

 Score =  325 bits (834), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 85/376 (22%), Positives = 161/376 (42%), Gaps = 25/376 (6%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +  +   E E  +L S+L   +DG+   +R+G I+  N    K+     E  L +     
Sbjct: 258 QQARSSTESERRKLSSVLSHMTDGVIATDRKGDIILLNDPAEKMLNVSRETALDQSVLEV 317

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
           L       ++H   E  S+ L  +                  +I K+   ++     ++D
Sbjct: 318 LGIQEEFTLDHLYEEPDSVLLDFSTRNEPYILRAS-----FSVIQKETGKANGLIAVLYD 372

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           ++E ++ + +              + +F+A VSHE+RTPLT +  + E + +  +     
Sbjct: 373 VTEQERIEGE--------------RREFVANVSHELRTPLTTMRSYLEALTDGAWQDPNI 418

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
                +          ++ +VN LL +SK++S +  L  E V   +  +  I   +  + 
Sbjct: 419 APQ--FLTVTQEETERMIRLVNALLQLSKLDSTEHRLMKEWVDFTDFFNNVIDRFE-MSK 475

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV-IL 739
           E+ +  + SF+     I  D   + Q+  NI+SNA+ ++P GG +          E+  +
Sbjct: 476 EQNVSFKRSFSKKSRFIDMDTDKITQVLYNIISNALKYSPEGGTVT--YRLRDRGELLEI 533

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V D G+G+    ++K  + F ++  ++  +  GTGLGL +AK M++A+ G  +  S   
Sbjct: 534 SVSDQGMGIPKENVDKIFERFYRVDKARSRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEG 593

Query: 800 KGTLIEIIFPLYDTSH 815
           KGT I    PL     
Sbjct: 594 KGTTIYFTLPLAPDEE 609


>gi|74317005|ref|YP_314745.1| multi-sensor hybrid histidine kinase [Thiobacillus denitrificans
           ATCC 25259]
 gi|74056500|gb|AAZ96940.1| Multi-sensor Hybrid Histidine Kinase [Thiobacillus denitrificans
           ATCC 25259]
          Length = 846

 Score =  325 bits (834), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 109/500 (21%), Positives = 194/500 (38%), Gaps = 29/500 (5%)

Query: 334 FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393
            +     + +AN   +      ++D  E   G  T L    +   N +   +   ++   
Sbjct: 115 LMAELDAITFANQPVMFAVVEAALD--ENNYGALTQLQREAIPLQNRLVEALDNMTNLQR 172

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
            A    L       + +  +  +    A      +           TR    ++E E  +
Sbjct: 173 KANEVALGKTFDAYQATRTLMLVLGIFATLLATLVAVLVSRRMLTQTR----QLETERQK 228

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV-EDILRKPFTVFLEQNTP---SVM 509
             ++ E  SD + I++  G     N A   +FG     D +  P             S  
Sbjct: 229 YRTLFETNSDAVVILDDHG-FTDCNPATLSMFGIDSVADFVNTPIPRLGTPMQANGVSAS 287

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLL--SLRIIIKKLPFSSCYSLTMHDISEWKQE 567
           +H    I +            G   +       + +   +L         M D+SE +  
Sbjct: 288 DHARQTIATARSTGHAVMDWQGRRADGTTFFAEIALHAMQLEGRPVIQAIMRDVSERRAA 347

Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
           +     A++ A + +  KS+F+A VSHEIRTP+  I+G S ++         + R  EY 
Sbjct: 348 EAAKEAAREAALQMARAKSEFVANVSHEIRTPMHGILGMSSLLLKTPL----DGRQREYV 403

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
           + +  S   +L I+ND+LD SKIE+GK+ +     S    +   ++L Q  A EK + + 
Sbjct: 404 STLKSSAESLLKIINDILDFSKIEAGKLAIEAVAFSPVALMQGVVALFQARALEKNLQLT 463

Query: 688 TSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILRVRD 743
            +   + P  +L D   ++QI LN++ NAI FT     + +S +  +  +       V D
Sbjct: 464 LALHESPPPALLGDPTRIRQILLNLVDNAIKFTDRD-HVELSGSFETLGDEVACRFSVTD 522

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           +G+GM+        + F Q  +S   R  GTGLGL ++  +     G+  + S P +G+ 
Sbjct: 523 SGIGMSAETQAGLFQAFSQADSSTTRRYGGTGLGLAISSQLAALMGGELTVESAPGRGSR 582

Query: 804 IEII-------FPLYDTSHP 816
             +         PL +   P
Sbjct: 583 FTLSVRLPTTDLPLAELPAP 602


>gi|186685040|ref|YP_001868236.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186467492|gb|ACC83293.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 1298

 Score =  325 bits (834), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 97/767 (12%), Positives = 233/767 (30%), Gaps = 73/767 (9%)

Query: 88   NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG-- 145
             ID  G +   +    +T G    +  G           +     + + +    +     
Sbjct: 426  RIDLQGQITFANMAACQTFGWKQDEYHGQSFWQFFHPDDL---PQMMEKIAGLGSSSEPL 482

Query: 146  ---KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP-------RA 195
               +  ++ + G          A+ I+    E    +  G                   A
Sbjct: 483  TNSERLIFTVTG---IRWFQWNAIAIHDDKGEVVEIQTVG--RDITEQQAALQQRQLAEA 537

Query: 196  LGKRLDKKFSHLHEIKKGHSSVEKEK-YDIFSQQSPPPHLRMKNKVSSLTEYY-----AH 249
               + ++KF    E       +     +           +  ++  S L +        H
Sbjct: 538  ALYQSEEKFRTFAENTHAVIWIASPDSFRTLYVSPAYEKIWGRSCQSLLEQPESWIDNVH 597

Query: 250  KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
             DD     K             +      + +         T+ ++ +E   Y       
Sbjct: 598  PDDRELIAKAVKQQLSGEPASAEYRIFRPDGSVRWIWDRSFTVYDDQREVQFYGGIAEDI 657

Query: 310  SLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLL--LTKYKSVDDIEIAGGLS 367
            +     +E    +   +        +        AN +     +     +    +   + 
Sbjct: 658  TERKLAEESLRESEARLTLATETAQMGIWDRNMIANTTIWSANMGPLYGLPIDTLCPTVE 717

Query: 368  TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
              L+     D  A+   +    +    +   R     W   +   +        N+  + 
Sbjct: 718  DYLNLIHPEDQKAVAANIAQIIEEGQGSIEYRTI---WPDGSLHWLNCKGQAYYNEIGQP 774

Query: 428  MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
            +   G   +  + ++ ++K+  +     ++L+  +D I + + +  IL  N+   ++FG+
Sbjct: 775  IRLIGTNRDVTERKLAEQKISEQ----AALLDIATDAILVRDLQSQILVWNKGAERMFGW 830

Query: 488  PVEDILRKPF-TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
               +++ K    +     T   +   L  ++      + +      TK  K + +     
Sbjct: 831  LSTEVIGKDLREILYPPGTHHQLEVPLKSVIESG---SWQGELSKVTKSGKEIVVESRWT 887

Query: 547  KLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
             +               DI+E KQ + +   A+++              ++H++   LT 
Sbjct: 888  LMRDPEGKPKSILSVDTDITEKKQLEEQFFRAQRL-----ESIGTLAGGIAHDLNNILTP 942

Query: 603  IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
            I+  +++++          R  +    ++ +      +V  +L  ++   G+  L     
Sbjct: 943  ILAAAQLLQGTFLQ--DEERSGQLLALVESNAQRGAALVKQILSFARGFKGERILIQVKY 1000

Query: 663  SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
             + E +             K I +      +   I  +   + Q+ +N++ NA    P G
Sbjct: 1001 LIAEIIQIVKETF-----PKSIELSAIIPEDTWPITGNTTQLHQVLMNLVVNARDALPDG 1055

Query: 723  GQIIISTT--------------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
            G+I IS                      +++ V D GVG+    L++  +PF        
Sbjct: 1056 GKIAISVENKFIDEAYTKMNLDAQVGHYIMITVADDGVGIPPEILDRIFEPFFTTKGVNT 1115

Query: 769  IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
                GTGLGL     ++ ++ G   + +   KG+  E+  P  + + 
Sbjct: 1116 ----GTGLGLSTVLGIIKSHAGFIKVSTNVGKGSKFELFLPAVEATQ 1158



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 51/459 (11%), Positives = 114/459 (24%), Gaps = 52/459 (11%)

Query: 183 IVHVNRVDNDPRALGKRLDK-----KFSHLHEIKKGHSSVEKEKYDIFSQ------QSPP 231
            + +  V   P    ++ D        S L + +  +  V  ++  +             
Sbjct: 96  TLTMAEVMTQPVVTLRQSDSNDIFIALSLLRQHQTDYLPVLNDRGQLLGIITQTSLLQAF 155

Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291
             ++M   V  L EY     D  +    P+   +  S  +      +        Q    
Sbjct: 156 DLVKMVGVVEGLQEYLQKPTDEFRQVNQPIEIEQVRSQTQNHLKVWVESQSSEIMQVNQE 215

Query: 292 LQNNSKESFEYLSHRNHPS-----LSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYAN 345
           LQ   +E           +          +       +  +  P  + V    G +  AN
Sbjct: 216 LQLALEELQVAEEELREQNEELSVARELVELERQRYQDLFEFAPDGYLVTDVAGIIQEAN 275

Query: 346 PSFLLLTKYK-------SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398
            +   +   +        +                  S       + L         AS 
Sbjct: 276 RTAATMLAVRQKYLRNKPLILFIAHQDRQAFNARLNNSQQLQEWEIYLKPRGGKAFPASV 335

Query: 399 RLHTIQWNRENSLAMT----------------------FIPFEKANQFPENMPQNGIEPE 436
           R+  +  +  + +                                      M    ++ E
Sbjct: 336 RVAAMYDSEGDLVGWRWLLCNINERQQAKKALRQAHDELEQRVAERTAELAMSNVLLQQE 395

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             D +  +  +         ++E+  D I  I+ +G I   N A  + FG+  ++   + 
Sbjct: 396 ITDRQRTEFALRQSENLYRQLVESQIDVIIRIDLQGQITFANMAACQTFGWKQDEYHGQS 455

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556
           F  F   +    M   +  + S     T  +  + +    +          +       +
Sbjct: 456 FWQFFHPDDLPQMMEKIAGLGSSSEPLTNSERLIFTVTGIRWFQW--NAIAIHDDKGEVV 513

Query: 557 ----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
                  DI+E +    +   A+    +       F   
Sbjct: 514 EIQTVGRDITEQQAALQQRQLAEAALYQSEEKFRTFAEN 552


>gi|149190330|ref|ZP_01868603.1| aerobic respiration control sensor protein ArcB [Vibrio shilonii
           AK1]
 gi|148835819|gb|EDL52783.1| aerobic respiration control sensor protein ArcB [Vibrio shilonii
           AK1]
          Length = 783

 Score =  325 bits (834), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 90/396 (22%), Positives = 174/396 (43%), Gaps = 17/396 (4%)

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
            +  +         +E E       + ++      L S ++A+ D I   N EG+    N
Sbjct: 122 RQKAEEAREEAMKDLENEVFQRERTQLELAERTALLRSFIDASPDLIYYRNAEGVFSGCN 181

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
           RA+ +L G   ++++         +     +     +++  +   T E+       ++  
Sbjct: 182 RAMEELTGRKEKELVGLTPWDVYSEEIAKQVVETDHKVMGDNQALTYEQWLEYPDGKKCF 241

Query: 539 LSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
             LR +                 DI+E K+ +  L       EK S  K+ F++ +SHE+
Sbjct: 242 YELRKVPFYSKDGKHLGLVGFGRDITERKRHQESL-------EKASRDKTTFISTISHEL 294

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTPL  I+G S ++ +       N    ++   I+ S   +  I ND++D+ K +  K+ 
Sbjct: 295 RTPLNGIVGLSRMLLDSHL----NTEQRKHMQTINVSAITLGHIFNDIIDMDKFDRRKLE 350

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNA 715
           L  EP++ ++ V+E  S+  L A +K +        ++P  ++ D   ++Q+  N++SNA
Sbjct: 351 LFPEPLNFEDFVTELESISALMAEQKGLRFDLERLTDLPEGVVVDATRLRQVIWNLVSNA 410

Query: 716 IHFTPSGGQI-IISTTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGE 772
           + FT  GG +  IS     N   +I+ V DTG+G+  +EL+K    + Q+ + +      
Sbjct: 411 MKFTKQGGVVMTISADIEDNYAHIIIEVEDTGIGIPQHELDKIFAMYYQVKSGKDNLHAV 470

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           GTG+GL ++K ++    G   + S    G+   +  
Sbjct: 471 GTGIGLAVSKQLIKMMDGDITVDSEEGFGSTFTVSI 506



 Score = 47.3 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 26/202 (12%), Positives = 55/202 (27%), Gaps = 6/202 (2%)

Query: 19  KGNTQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVS---NTNYLDSENTFV 75
           +   QDL+ K   N  +  +  +E    +   +    D   E          L      +
Sbjct: 98  RSRDQDLNHKLQQNIRKLNQEIEERQKAEEAREEAMKDLENEVFQRERTQLELAERTALL 157

Query: 76  FDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD 135
              I  +    +  +A G     +  + +  G    +++G+   DV              
Sbjct: 158 RSFIDASPDLIYYRNAEGVFSGCNRAMEELTGRKEKELVGLTPWDVYSEEIAKQVVETDH 217

Query: 136 LLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA 195
            +   N        W           +L  +P YS++ +  G  GFG           + 
Sbjct: 218 KVMGDNQALTYE-QWLEYPDGKKCFYELRKVPFYSKDGKHLGLVGFG--RDITERKRHQE 274

Query: 196 LGKRLDKKFSHLHEIKKGHSSV 217
             ++  +  +            
Sbjct: 275 SLEKASRDKTTFISTISHELRT 296


>gi|159897998|ref|YP_001544245.1| multi-sensor hybrid histidine kinase [Herpetosiphon aurantiacus ATCC
            23779]
 gi|159891037|gb|ABX04117.1| multi-sensor hybrid histidine kinase [Herpetosiphon aurantiacus ATCC
            23779]
          Length = 1380

 Score =  325 bits (834), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 138/796 (17%), Positives = 257/796 (32%), Gaps = 97/796 (12%)

Query: 42   ENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEE 101
            E    +   +       Q  +  T  L     F    I        ++DA G ++  +  
Sbjct: 412  ERKLQEQQIRQLNEQLEQRVIERTQELAQSYRFQRTMIQHAPSIIISLDAGGVVRGFNRA 471

Query: 102  LPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPI 161
                 G    +++G                    L  R          W  E        
Sbjct: 472  AEFEFGYQETELLGRPFP--------------TKLFDR----SDLRYRWETEQHRNR--- 510

Query: 162  DLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEK 221
                L     +          +    R   +P               E+           
Sbjct: 511  ---GLFYSDLD--------ILLAEARRGVAEPHEWQAIHRSGSRFPLELTITPLLHADVL 559

Query: 222  YDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLN 281
                       +     K +    +  ++     +E     ++ E  L         +L+
Sbjct: 560  EGFLLI----GNNIAARKRTEEEFHLLYRTTRSVSEAADFNSALEVVLRNICAAIGWDLS 615

Query: 282  QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNL 341
                          +              +    +E        +    +P      G +
Sbjct: 616  VAWVPDANQDFLALA-------------PIRWSSNERFQHFYTYLQSLELPQGAGLAGRV 662

Query: 342  FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR----SDRTCIAAS 397
                      TK+ +   IE        L+         +           ++   +A  
Sbjct: 663  --------WQTKHSANYAIEHDHWTEGNLNQRGYELAQQVGLQSAVAVPILANDQVVAIL 714

Query: 398  ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
                + +                                    +  + ++     +  ++
Sbjct: 715  EFFRSSRGVDHERTTNLISVIATQLGT------------LFQRKHAEMQLRQSEAKNRAL 762

Query: 458  LEATSDGIAIINREGIIL--STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
            L A  D +     +G IL   TN   S LF  P + ++         Q     +      
Sbjct: 763  LAAMPDLMIRFTLKGEILDYHTNDP-SDLF-LPQDAMIGANAHNHQPQPQILNIMSATQR 820

Query: 516  ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN------ 569
             +  +  Q +E           +   RI            + + +I+E K+ +       
Sbjct: 821  AIETNSTQNVEYELTLPKGN-TVFEARIAPSANDE---VVMVIRNITERKRIEQTLQQQT 876

Query: 570  -KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
             +LS A     K +  K +FLA +SHE+RTPLT I+ F+E ++  ++G L   +      
Sbjct: 877  DELSIANAELAKAARLKDEFLASMSHELRTPLTGILAFTEALRYDQYGALNQAQAQAL-Q 935

Query: 629  YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
             ID +   +LD++ND+LD+SKIE+GK+ ++ + + +DE    +I +VQ  A  K++ +  
Sbjct: 936  QIDENSRHLLDLINDILDLSKIEAGKLTINHQSMLIDEICQASIRMVQKLAQNKQLELLY 995

Query: 689  SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN-EEVILRVRDTGVG 747
                    + AD R +KQ+ +N+LSNA+ FTP+GG+I +S    S   +V L V DTG+G
Sbjct: 996  EPCAADAMLCADSRRLKQMLVNLLSNAVKFTPAGGRIGLSVKLDSQFHQVELTVWDTGIG 1055

Query: 748  MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
            +   ++ K  +PF Q+ +    +  GTGLGL L   M + + G+  + S    G+   ++
Sbjct: 1056 INTQDIPKLFRPFSQLDSKLSRQYAGTGLGLALVYHMANLHGGRVELQSEVGVGSQFRLV 1115

Query: 808  FP-------LYDTSHP 816
             P       +  T  P
Sbjct: 1116 LPWYGNAEIVEPTEQP 1131



 Score =  117 bits (294), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 66/585 (11%), Positives = 155/585 (26%), Gaps = 75/585 (12%)

Query: 80  PRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI--GMRLCDVSDILHIDPN--NHIGD 135
             T    W+ID+  +L   +      +  +  + I  G  +  +     I          
Sbjct: 40  DHTESLIWSIDSSQHLIMSNRTFHDYLHQWYDQHIELGQPMSMLHLPKPIAKPWNEAYRR 99

Query: 136 LLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA 195
            L+    +  +        T  Y   +    PI    R   G    G             
Sbjct: 100 ALQ-GEAFAQEFVHHYAGATRYY---EFHFAPILDEQRVVQGVNISG--RDISSRRLAEV 153

Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH---LRMKNKVSSLTEYYAHKDD 252
           + +  + ++  ++E           +       +   H   +++++ +      + H  D
Sbjct: 154 MLRSSEARYRAINEAAPYGVFFCDTQGQCVYANTALLHMLEVKLEDVLGDAWMEFLHPKD 213

Query: 253 VLKTEKY----PLLTSEES----SLPEQEDFHTINLNQYTKKQYFGTLQNNS---KESFE 301
              +E +     L  +++        +    HT        +     +            
Sbjct: 214 ASDSESFWHNLALSVNQQPIPSVLFDQTVRLHTKLNQLIWLRLRISPVIEAGVLCGFVGI 273

Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYAN---PSFLLLTKYKS 356
                            ++   +  D  P   F+Y     +L Y N     +        
Sbjct: 274 TDDLSALKKAETAAQAKQHFIQKIADTLPSQLFIYDRASASLIYTNEVSRQWFKSFNIDP 333

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
            D       +  L      +    +       S    +        ++            
Sbjct: 334 SDM----NTIRPLFHPDDHAIIRKVLQGRTVTSSDPQLIVDFE-CRLRSPEGIYRYFALR 388

Query: 417 PFE-KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL------------------CSI 457
                 +         G+  +  + ++ ++++     QL                   ++
Sbjct: 389 MTPFVIDADGTVSQLLGVASDITERKLQEQQIRQLNEQLEQRVIERTQELAQSYRFQRTM 448

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL-------------EQN 504
           ++     I  ++  G++   NRA    FGY   ++L +PF   L             +  
Sbjct: 449 IQHAPSIIISLDAGGVVRGFNRAAEFEFGYQETELLGRPFPTKLFDRSDLRYRWETEQHR 508

Query: 505 TPSVMNHYLTEILSLDLRQTLE-KITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHD 560
              +    L  +L+   R   E        +      L + I  L  +     + L  ++
Sbjct: 509 NRGLFYSDLDILLAEARRGVAEPHEWQAIHRSGSRFPLELTITPLLHADVLEGFLLIGNN 568

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE--IRTPLTAI 603
           I+  K+ + +     +     S   +DF + +  E  +R    AI
Sbjct: 569 IAARKRTEEEFHLLYRTTRSVSEA-ADFNSAL--EVVLRNICAAI 610



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 38/294 (12%), Positives = 88/294 (29%), Gaps = 26/294 (8%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
            +   +           +D      + + S  +L  +N +F           IE+   +S
Sbjct: 22  ETELQHVRSHTAKLQALIDHTESLIWSIDSSQHLIMSNRTFHDYLHQWYDQHIELGQPMS 81

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
            L     ++                  A       +      +    F      ++    
Sbjct: 82  MLHLPKPIAK--PWNEAYRRALQGEAFAQEF----VHHYAGATRYYEFHFAPILDEQRVV 135

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
              N    +    R+ +  +     +  +I EA   G+   + +G  +  N A+  +   
Sbjct: 136 QGVNISGRDISSRRLAEVMLRSSEARYRAINEAAPYGVFFCDTQGQCVYANTALLHMLEV 195

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT-----LEKITLGSTKEEKLLSLR 542
            +ED+L   +  FL     S    +   +     +Q       ++     TK  +L+ LR
Sbjct: 196 KLEDVLGDAWMEFLHPKDASDSESFWHNLALSVNQQPIPSVLFDQTVRLHTKLNQLIWLR 255

Query: 543 IIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
           + I  +  +     +     D+S  K+ +             +  K  F+ +++
Sbjct: 256 LRISPVIEAGVLCGFVGITDDLSALKKAET-----------AAQAKQHFIQKIA 298



 Score = 55.0 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/166 (10%), Positives = 50/166 (30%), Gaps = 7/166 (4%)

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
             E++ +  ++ +        + +     +L ++++ T   I  I+    ++ +NR    
Sbjct: 5   ANESLLELQLKQQVSLLETELQHVRSHTAKLQALIDHTESLIWSIDSSQHLIMSNRTFHD 64

Query: 484 LFG--YPVEDILRKPFTVF-LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
                Y     L +P ++  L +      N      L  +     ++         +   
Sbjct: 65  YLHQWYDQHIELGQPMSMLHLPKPIAKPWNEAYRRALQGEA--FAQEFVHHYAGATRYYE 122

Query: 541 LRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
                           +++  DIS  +  +  L  ++      +  
Sbjct: 123 FHFAPILDEQRVVQGVNISGRDISSRRLAEVMLRSSEARYRAINEA 168


>gi|288935843|ref|YP_003439902.1| multi-sensor hybrid histidine kinase [Klebsiella variicola At-22]
 gi|288890552|gb|ADC58870.1| multi-sensor hybrid histidine kinase [Klebsiella variicola At-22]
          Length = 895

 Score =  325 bits (834), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 94/502 (18%), Positives = 174/502 (34%), Gaps = 37/502 (7%)

Query: 326 VDKCPIPFFVYSH-GNLFYANPSFLLLTKY--------KSVDDIEIAGGLSTLLDAPKLS 376
           ++  P    +Y     L   N                   ++ +      +     P   
Sbjct: 9   LNVLPSAVMIYDERERLQAWNDKVARFYPAIAPWLAVGAPLESLAEKFIDAGYNIDPGRQ 68

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
                  +   R    C         ++ +    + +                   +  +
Sbjct: 69  QTLRETIIRNCRQTNHC--------EVRQSGNRRIYVQHQRLADG-------GIVSLHTD 113

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR-- 494
             +    +R             E+   GI         L  N  +  + G          
Sbjct: 114 ITELDEARRARHQLHDDFLFTAESIQIGIWDWQVSHDNLQVNDTLLAMVGQSRTQWRYPL 173

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR-----IIIKKLP 549
           +     + ++  + +   +    +  +    E         +    +      + +    
Sbjct: 174 RFMLNLVHEDDRTTLQQAMISSQNEHMP-VFECELRVQHPTQGWRWMLLSGQIVTLNMQQ 232

Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
            +     T+ DI+  K  +     A K A + +  KS FLA +SHEIRTP+  I+G +++
Sbjct: 233 QAERVIGTLQDITRRKAAELLAIEAAKEAREANEAKSAFLANMSHEIRTPMNGILGMAQL 292

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
             +            EY + +  S   +L I+ND+LD S+IESGKM +  EP+ +   + 
Sbjct: 293 CLDTPLTA----EQREYLSLVMSSAQSLLHIINDILDFSRIESGKMQVDEEPLEIRPFIQ 348

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
             I      A+EK I +    +  +P +L  D   ++QI  N+L NA+ FT  G  ++  
Sbjct: 349 SLIRPHMPAASEKGIELLVDISPAVPEVLIVDGPRLRQILTNLLGNALKFTHQGEVLLAI 408

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                      R+RDTG+G+   + +   + F Q  +S   R  GTGLGL ++  +V   
Sbjct: 409 APADDESRWRFRIRDTGIGIAPEKQKAIFEAFSQADSSTTRRYGGTGLGLTISARLVSLM 468

Query: 789 MGKFYIFSTPAKGTLIEIIFPL 810
            G+  + S P  G+      PL
Sbjct: 469 GGELTVDSQPGAGSEFAFTLPL 490


>gi|312129290|ref|YP_003996630.1| multi-sensor hybrid histidine kinase [Leadbetterella byssophila DSM
           17132]
 gi|311905836|gb|ADQ16277.1| multi-sensor hybrid histidine kinase [Leadbetterella byssophila DSM
           17132]
          Length = 1288

 Score =  325 bits (834), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 103/473 (21%), Positives = 201/473 (42%), Gaps = 19/473 (4%)

Query: 343 YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT 402
           + + +  ++       ++     L       +      +  V   + + T      R   
Sbjct: 430 FWSKTTRIIHGVGPDFEVNEENALDFF---EEEDREKFLNIVSKAKEEGTPYDVELR--- 483

Query: 403 IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
           I       + +    +    +  +     GI  +    +    +++ +   L S ++   
Sbjct: 484 ILRTNGEKIWVRLQGYPDI-EKGKCRRIYGILQDIDSLKRMLLEIQEKEAMLSSFVKHVP 542

Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522
             +A+++     +ST++   + F    E+ + +            +   Y   +     +
Sbjct: 543 AAVAMLDLNLNYISTSKRWREEFFGGGENPVSQSLFSLFPGMPDYLKEIYYKAVEGTPYK 602

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
              E + +    E +     +   K          ++  + +E    + +L  A K AE+
Sbjct: 603 NYDEVVVVQGKDEPQHYYWEVRPWKYADDRIGGVIVSALNNTESIAIQKELKEAMKSAEQ 662

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            ++ KS FLA +SHEIRTPL  +IGFS+++         N    +Y NYI+ SG+ ++ I
Sbjct: 663 ANAAKSQFLANMSHEIRTPLNGVIGFSDLLLKTPL----NATQRQYLNYINESGSSLMQI 718

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILA 699
           +ND+LD SK+E+GKM L     S+ +   + I++V   A  K I +     + +P  +L 
Sbjct: 719 INDILDFSKVEAGKMELDEAFHSIYDLSDQVINVVMYQAQVKNIELLLDVQHGLPAAVLL 778

Query: 700 DLRSVKQIALNILSNAIHFTPSGGQIIISTTH--TSNEEVILR--VRDTGVGMTNYELEK 755
           D   VKQ+ +N+L NA+ FT  G ++ ++      +++E+ LR  VRDTG+G+   + E+
Sbjct: 779 DEARVKQVLVNLLGNAVKFTEEG-EVELAVRQISRTDKEIGLRFLVRDTGIGIPEEKKER 837

Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
               F Q  +S   R  GTGLGL ++ +++     K Y+ S    G+      
Sbjct: 838 IFDAFTQEDSSISKRYGGTGLGLTISNSILKHMGSKLYLESEVGWGSTFYFDL 890



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/275 (13%), Positives = 79/275 (28%), Gaps = 19/275 (6%)

Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
           L        +   + +        V      +   NP+F  L        +        L
Sbjct: 156 LQKQSRVHADYYHKILSITNNLVLVLDTDLQIKKVNPAFESLFNMG--QKVARGKDFKAL 213

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
               +   N+   P+ L   D                 +    + +       +  +   
Sbjct: 214 FKESENWPND--YPLKLASEDGFYFT--------STTDQPKTIIQWRL----KREEQFNE 259

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
                         K+K+E    +     E     +++ +  G IL+ N    +  GY  
Sbjct: 260 IFCFGRNVTQEVEEKKKLENSERRFRKFFEKAIGYMSMHDMTGKILAVNEKGRQQLGYEA 319

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
            D+ +      L +      N Y+  I        +  +    + +E       I+++  
Sbjct: 320 LDLSQMKLQDLLPEKHLPEYNEYIKRIYKNKEDSGM-MVLKTKSGDETYWLYNNILERDS 378

Query: 550 FSSCYSL-TMHDISEWKQEKNKLSHAKKIAEKESS 583
             + Y + T  +++E    +  L + K+I E+ S 
Sbjct: 379 QQNPYVISTALNLTERINLEKDLLYTKEILERTSQ 413


>gi|229145708|ref|ZP_04274089.1| hypothetical protein bcere0012_28590 [Bacillus cereus BDRD-ST24]
 gi|228637689|gb|EEK94138.1| hypothetical protein bcere0012_28590 [Bacillus cereus BDRD-ST24]
          Length = 801

 Score =  325 bits (834), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 104/532 (19%), Positives = 211/532 (39%), Gaps = 47/532 (8%)

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVD-----KCPIPFFVYSHGNLFYANPSFLLL 351
            +  E +      +     +   + T E ++                G++  AN ++  +
Sbjct: 294 GQVIEVVGSTVDITERKKVESELSATKELLESFIKHNLDAITISDREGHILQANKAYEKI 353

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ-WNRENS 410
             + S + I            P + D    + +   +   T  +   RL T++  +  + 
Sbjct: 354 FGWSSQEIIGKRL--------PCVPDFLMEESLENIQKILTGESVVTRLETVRQRSDGSL 405

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK-------MEIEVMQLCSILEATSD 463
           L ++       +     +  + I  +  + +  +R+       +    M+  +++E  +D
Sbjct: 406 LDISLTVSPILDVRGNVIALSAICRDISERKQAERERHRLHQQLRDSEMKYRALIEQATD 465

Query: 464 GIAI--INREG---IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
            + +  +N +      +  N    + FGY  E++L   F+  + Q++  ++   L +I  
Sbjct: 466 AVYVVELNEDNAPSRFIEVNPVGCRRFGYSREELLSLSFSNIVPQDSQIIVR-LLEKIKK 524

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578
                TL+   +  T +       + +  L     +     DI+E  + +  L  ++K+A
Sbjct: 525 GQTSFTLQDEYVFPTGKVITTEFSVRVFNLNGKKVFLSISRDITERLKTEELLRKSEKLA 584

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
                        ++HEI  PLTA+ GF +++K+       N     Y N I      + 
Sbjct: 585 VV-----GQLATVMAHEINNPLTAMKGFMQLLKSTE-----NENNQGYINIISSEIERIE 634

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
            I  + + ++K +  KM  +    ++   + + + L+Q  A    I  R      IP I 
Sbjct: 635 SITTEFMAVAKPQVVKMQPN----NMSVLMDQVLMLLQPQAIMNNIKFRIDLNPGIPLIS 690

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
            +   +KQ+ +NIL NAI   P GG+I+I      N +V +R  D G G+    +    +
Sbjct: 691 CEGNQLKQVFVNILKNAIESMPMGGEILIQINILDNNQVSIRFIDQGCGIPKERIPYLGE 750

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           PF        I+ EG GLGL +   +++ + GK +I S   KGT +E+  P+
Sbjct: 751 PFY------SIKEEGIGLGLMICYKIIETHQGKIFIKSEMNKGTTVEVTLPI 796



 Score =  108 bits (271), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 44/286 (15%), Positives = 91/286 (31%), Gaps = 21/286 (7%)

Query: 313 AYFDEGENLTPETVDKCPIPFF----VYSHGNLFYANPSFLLLTKYKSVDDIEI-AGGLS 367
               + +    +TV +     F    V  H      +  F     + S   +      + 
Sbjct: 186 RELKKSKQELTDTVHELQGGIFKFKKVDKHFIHTLCDGQFYYQNGFYSEQVVGKSLRTID 245

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
             +  P L          L   +   I        + W  + ++ +         +  + 
Sbjct: 246 ASIIPPHLVPQLMKY--YLQAWEGKEIIFE-----LPWPNDKTIILI--ALRPIKRNGQV 296

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
           +   G   +  + +  + ++      L S ++   D I I +REG IL  N+A  K+FG+
Sbjct: 297 IEVVGSTVDITERKKVESELSATKELLESFIKHNLDAITISDREGHILQANKAYEKIFGW 356

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
             ++I+ K     +           + +IL           T+    +  LL + + +  
Sbjct: 357 SSQEIIGKRL-PCVPDFLMEESLENIQKIL-TGESVVTRLETVRQRSDGSLLDISLTVSP 414

Query: 548 LPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
           +               DISE KQ + +     +   ++S  K   L
Sbjct: 415 ILDVRGNVIALSAICRDISERKQAERERHRLHQQL-RDSEMKYRAL 459



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 37/286 (12%), Positives = 84/286 (29%), Gaps = 23/286 (8%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG-KTT 148
           D  G++ + ++   K  G  + ++IG RL  V D L  +   +I  +L  ++     +T 
Sbjct: 338 DREGHILQANKAYEKIFGWSSQEIIGKRLPCVPDFLMEESLENIQKILTGESVVTRLETV 397

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +G+ L + + ++  PI              I               RL ++     
Sbjct: 398 RQRSDGSLLDISLTVS--PILDVRGNVIALS--AICRDISERKQAERERHRLHQQLRDSE 453

Query: 209 EIKKGHSSVEKEKYDIFSQQS-----------PPPHLR---MKNKVSSLTEY-YAHKDDV 253
              +       +   +                P    R    + ++ SL+      +D  
Sbjct: 454 MKYRALIEQATDAVYVVELNEDNAPSRFIEVNPVGCRRFGYSREELLSLSFSNIVPQDSQ 513

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
           +       +   ++S   Q+++        T +               +LS     +   
Sbjct: 514 IIVRLLEKIKKGQTSFTLQDEYVFPTGKVITTEFSVRVFN--LNGKKVFLSISRDITERL 571

Query: 314 YFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVD 358
             +E    + +      +     +   N   A   F+ L K    +
Sbjct: 572 KTEELLRKSEKLAVVGQLATVMAHEINNPLTAMKGFMQLLKSTENE 617


>gi|158523282|ref|YP_001531152.1| PAS/PAC sensor hybrid histidine kinase [Desulfococcus oleovorans
           Hxd3]
 gi|158512108|gb|ABW69075.1| PAS/PAC sensor hybrid histidine kinase [Desulfococcus oleovorans
           Hxd3]
          Length = 962

 Score =  325 bits (834), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 100/671 (14%), Positives = 206/671 (30%), Gaps = 54/671 (8%)

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS--------PPPHLRM 236
              +   +     +  + +F  L E       +E    ++              P     
Sbjct: 177 QELQARQEAEQALRESESRFRLLAETAPVGIIIEDRDQNVLYVSPTCISLCGYAPEETPT 236

Query: 237 KNKVSSLTEYYAHKDDVLKTEKYPLLTS----EESSLPEQEDFHTINLNQYTKKQYFGTL 292
                SL        + ++ E    + +         P +      +      +      
Sbjct: 237 MEAWFSLVCPDETLRNRVRAEWAAAVETATKTGVEIQPMEFPVTCRDGTVRDIEFRMSAT 296

Query: 293 QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLL 351
           Q+            +         E E       +      +      N  Y +PS   L
Sbjct: 297 QDLDFVVLS--DVTSRRRAEQALRESERKYRRLAENTSDVVWTADMNLNTTYVSPSVERL 354

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ--WNREN 409
              + V                           +    D  C    +RL  +Q      +
Sbjct: 355 VG-EPVGLHIQRTMEEKFPADSLNRLYAVFAKELENEKDPACDKNRSRLVEVQHFRADSS 413

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469
           ++ ++       +     +   GI  +  + +  ++ +     +  +ILE    G   ++
Sbjct: 414 TVWVSINISFIRDTTGRPIGLQGITRDITERKQAEQALRESEERYRTILENIEAGYYEVD 473

Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD-LRQTLEKI 528
             G     N+A+ ++ GY  +++L      +++      + H   ++ +     +  +  
Sbjct: 474 LAGNFTFFNQAMCQILGYAEDELLGMNNRSYMDDENAKKVFHTFNQVFTSGKTAKAFDWE 533

Query: 529 TLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
            +        +   I + +   ++   +     DISEWKQ + +         +    +S
Sbjct: 534 LIRKDNTRCFVDTSIALMRDAENNPVGFRGIARDISEWKQAEAERERLSTQLLQAQKMES 593

Query: 587 --DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
                  V+H+    L+ I+G++E        P  +P Y E    I  +     +I   L
Sbjct: 594 VGRLAGGVAHDFNNMLSVILGYTE--LAMHRVPPHDPLY-EDLREILSAAKRSSEITRQL 650

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704
           L  ++    K     + + L + V   + +++     + I +  +    +  +  D   +
Sbjct: 651 LAFAR----KQTSSPKVIDLSDTVENMLKMLRRLI-GEDIDLAWNPGPGLWTVNMDPAQI 705

Query: 705 KQIALNILSNAIHFTPSGGQIIIST--------------THTSNEEVILRVRDTGVGMTN 750
            QI  N+L NA       G++ I T                   + V+L V D G GM  
Sbjct: 706 SQILANLLVNARDAIGGVGKVTIETGNVSFDQDYCEDHNEFLPGDYVVLAVSDDGCGMDR 765

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP- 809
              ++  +PF          G+GTGLGL     +V  N G   ++S P +GT   I  P 
Sbjct: 766 KTRDRLFEPFFTTK----EVGKGTGLGLATVYGIVSQNNGFINVYSEPGQGTTFRIYLPR 821

Query: 810 ----LYDTSHP 816
               L     P
Sbjct: 822 HGGALSTAHQP 832



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 56/532 (10%), Positives = 126/532 (23%), Gaps = 63/532 (11%)

Query: 35  ETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYL--DSENTFVFDPIPRTVRFTWNIDAH 92
           E  K   E       ++    +Q  ++         +SE+ F        V      D  
Sbjct: 155 EALKLYSERLIRKLEQKMLQAEQELQARQEAEQALRESESRFRLLAETAPVGIIIE-DRD 213

Query: 93  GYLKEISEELPKTIGNYAFK-MIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW- 150
             +  +S       G    +         +        N    +      T         
Sbjct: 214 QNVLYVSPTCISLCGYAPEETPTMEAWFSLVCPDETLRNRVRAEWAAAVETATKTGVEIQ 273

Query: 151 -------PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                    +GT   +   ++A               F ++             +  ++K
Sbjct: 274 PMEFPVTCRDGTVRDIEFRMSATQDLD----------FVVLSDVTSRRRAEQALRESERK 323

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS--------------SLTEYYAH 249
           +  L E             +      P     +   V               SL   YA 
Sbjct: 324 YRRLAENTSDVVWTADMNLNTTYVS-PSVERLVGEPVGLHIQRTMEEKFPADSLNRLYAV 382

Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
               L+ EK P      S L E + F   + +          +++ +             
Sbjct: 383 FAKELENEKDPACDKNRSRLVEVQHFR-ADSSTVWVSINISFIRDTTGRPIGLQGITRDI 441

Query: 310 SLSAYFDEGEN----LTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364
           +     ++            ++     ++ V   GN  + N +   +  Y   + +   G
Sbjct: 442 TERKQAEQALRESEERYRTILENIEAGYYEVDLAGNFTFFNQAMCQILGYAEDELL---G 498

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
             +      + +         ++ S +T  A    L            +        +  
Sbjct: 499 MNNRSYMDDENAKKVFHTFNQVFTSGKTAKAFDWELIR---KDNTRCFVDTSIALMRDAE 555

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI--LEATSDGIAIINREGIILSTNRAVS 482
              +   GI  +  + +  + + E    QL     +E+           G+    N  +S
Sbjct: 556 NNPVGFRGIARDISEWKQAEAERERLSTQLLQAQKMESVGRL-----AGGVAHDFNNMLS 610

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
            + GY           +        +       + +      + +  L   +
Sbjct: 611 VILGYTE-------LAMHRVPPHDPLYEDLREILSAAKRSSEITRQLLAFAR 655



 Score = 74.3 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 20/165 (12%), Positives = 53/165 (32%), Gaps = 12/165 (7%)

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
            E E    +  ++ +     +   + E    GI I +R+  +L  +     L GY  E+ 
Sbjct: 175 AEQELQARQEAEQALRESESRFRLLAETAPVGIIIEDRDQNVLYVSPTCISLCGYAPEET 234

Query: 493 LRKPFTVFLEQNT-------PSVMNHYLTEILSLDLR-QTLEKITLGSTKEEKLLSLRII 544
                   L            +     +       +  Q +E          + +  R+ 
Sbjct: 235 PTMEAWFSLVCPDETLRNRVRAEWAAAVETATKTGVEIQPMEFPVTCRDGTVRDIEFRMS 294

Query: 545 IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
             +        + + D++  ++ +  L  +++   + + + SD +
Sbjct: 295 ATQDLD----FVVLSDVTSRRRAEQALRESERKYRRLAENTSDVV 335


>gi|239905516|ref|YP_002952255.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
            RS-1]
 gi|239795380|dbj|BAH74369.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
            RS-1]
          Length = 1265

 Score =  325 bits (834), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 121/788 (15%), Positives = 256/788 (32%), Gaps = 85/788 (10%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKRQNTWYGKT 147
            +D    +   ++      G +  +++G    D+       +    + D +  Q   +G +
Sbjct: 346  LDVKAKVLFANQYFLDLTGWHEDEILGQDWFDLFIPTEVREQVRSVFDAVMSQQHIHGFS 405

Query: 148  TL----WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
            T         G      +  A                 G+              +  +++
Sbjct: 406  TYENEIMTRAGEKRV--VSWANALTLDHKGYVIDVTCLGV--DVTERRRAEQALRDSEER 461

Query: 204  FSHLHEIKKGHSSVEKEKYDIFSQQSPPP---HLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
            +  L E           ++ I              +K  +    E +   ++  +  +  
Sbjct: 462  YRRLVETANEGIWSINAEHVITLVNHAMAEMLGYEVKEIIGHKVEDFIFPEEFDQHTEKM 521

Query: 261  LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
                  +S   +      + +          L ++        +     +   + +E   
Sbjct: 522  QARHAGASDIYERRLIRKDGSILWTIVSAKALTDDDGNFTGAFAMFTDITERKHMEEKLR 581

Query: 321  ----LTPETVDKCPIPFFV-----------------YSHGNLFYANPSFLLLTKYKSVDD 359
                     V+    PF                      G ++  +     LT      D
Sbjct: 582  ANESRLISLVEVLQHPFTEPQEFLDFALHEAIRLTESKLGYIYLYDEKTERLTLNSWSRD 641

Query: 360  IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR-----------------LHT 402
            +     +        L         +  RS        A                  +  
Sbjct: 642  VMHECTIVKPHTHYDLKGTGVWGEAVRQRSPIVINDFQAYHPLKKGYPDGHAKLYSYMTI 701

Query: 403  IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE----DVDTRINKRKMEIEVMQLCSIL 458
              +     +++  +  ++      ++ Q  +  +     +D    +  +     QL S+ 
Sbjct: 702  PVFREGKIVSVVGVANKEGEYTDTDVYQLSLLMDAVWKVLDREEAESALHEREAQLASLS 761

Query: 459  EATSDGIAI-INR--EGII---LSTNRAVSKLFGYPVEDILRKP--FTVFLEQNTPSVMN 510
            +    G+   ++   +G I      +  V KL G   E +L         + +   +V+ 
Sbjct: 762  DNLPQGMVYQLDSGSDGTIRHFTYLSAGVMKLHGVSPEQVLADANILYNQIIEEDRAVLA 821

Query: 511  HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK---LPFSSCYSLTMHDISEWKQE 567
                + +      T            ++    +       L   + +     DI      
Sbjct: 822  ERENQAIQSK--STFSAEVRMKMPSGEIRWHLLTSAPRRTLNAHTIWDGVEIDI------ 873

Query: 568  KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
             + L  +K+ AE  +  KS+FLA +SHEIRTPL  ++G  ++++    G        EY 
Sbjct: 874  -DDLMKSKEAAENANRAKSEFLANMSHEIRTPLNGVLGMLQLLETAPLGA----EEKEYV 928

Query: 628  NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
            +    +   + ++++D+LD+S+IE+GK+N+  +  SL +       L+   A +K + +R
Sbjct: 929  DEAITASKRLTNLLSDILDLSRIEAGKLNIRIDEFSLADMFDSVDGLLAATARKKDLELR 988

Query: 688  TSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIST-----THTSNEEVILRV 741
                  +P  +L D   ++QI  N++ NAI F+  G  I +          + E ++  V
Sbjct: 989  FFLDEQLPSFVLGDEVRLRQILFNLVGNAIKFSDQG-TISVQAYLLPFAKIAQERILFMV 1047

Query: 742  RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
             D G+G+++  L    +PF Q   +   R +G GLGL + K +V    G+  I S P  G
Sbjct: 1048 SDEGIGISDELLGLIFEPFSQGEGNYTRRFQGAGLGLSIVKRLVGLLEGEIAIESAPGLG 1107

Query: 802  TLIEIIFP 809
            T + +  P
Sbjct: 1108 TTVYLSLP 1115



 Score =  134 bits (336), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 58/440 (13%), Positives = 125/440 (28%), Gaps = 27/440 (6%)

Query: 177 GFRGFGIVHVNRVDNDPRA-LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH-- 233
           G    G +   R   +         ++K+  L+        V +    I  + +P     
Sbjct: 178 GTALVGKLMSIRASREEEKIKTLESEEKYRALYASVMDPILVAETDTGIIVECNPAAEEL 237

Query: 234 -LRMKNKVSSLTEYYAHKDDVLKTE---KYPLLTSEESSLPEQEDFHTINLNQYTKKQYF 289
             R + ++  + +   H    +                   ++  F   + +  T     
Sbjct: 238 FHRSRKELLGMHQSDLHPAGEVVPHTKTPQFCRQVASPDQVQEVRFSRSDGDIRTALVRA 297

Query: 290 GT--LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP-IPFFVYSHGNLFYANP 346
               LQ  +     +       +      + E      +   P I   +     + +AN 
Sbjct: 298 SVFHLQGRALILGVFHDITERKAFEEALIKSEQKWRHVLLNTPQIGISLDVKAKVLFANQ 357

Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
            FL LT +   + +         L  P               S +     S   + I   
Sbjct: 358 YFLDLTGWHEDEILGQD---WFDLFIPTEVREQVRSVFDAVMSQQHIHGFSTYENEIMTR 414

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
                 +++      +     +    +  +  + R  ++ +     +   ++E  ++GI 
Sbjct: 415 AGEKRVVSWANALTLDHKGYVIDVTCLGVDVTERRRAEQALRDSEERYRRLVETANEGIW 474

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
            IN E +I   N A++++ GY V++I+      F+           +            E
Sbjct: 475 SINAEHVITLVNHAMAEMLGYEVKEIIGHKVEDFIFPEEFDQHTEKMQ-ARHAGASDIYE 533

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKES 582
           +  +   K+  +L   +  K L               DI+E K  + KL   +       
Sbjct: 534 RRLI--RKDGSILWTIVSAKALTDDDGNFTGAFAMFTDITERKHMEEKLRANESRLISLV 591

Query: 583 SHK-------SDFLARVSHE 595
                      +FL    HE
Sbjct: 592 EVLQHPFTEPQEFLDFALHE 611



 Score =  114 bits (286), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 36/375 (9%), Positives = 99/375 (26%), Gaps = 22/375 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            W+I+A   +  ++  + + +G    ++IG ++ D       D +           +   
Sbjct: 473 IWSINAEHVITLVNHAMAEMLGYEVKEIIGHKVEDFIFPEEFDQHTEKMQARHAGASDIY 532

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +  L   +G+ L+  +  +A  +   +  F+G   F +              +  + +  
Sbjct: 533 ERRLIRKDGSILWTIV--SAKALTDDDGNFTGA--FAMFTDITERKHMEEKLRANESRLI 588

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
            L E+   H   E +++  F+       +R+          Y  K + L    +      
Sbjct: 589 SLVEVL-QHPFTEPQEFLDFALHEA---IRLTESKLGYIYLYDEKTERLTLNSWSRDVMH 644

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
           E ++ +    + +                 +      +   +  +         +   + 
Sbjct: 645 ECTIVKPHTHYDLKGTGVW---------GEAVRQRSPIVINDFQAYHPLKKGYPDGHAKL 695

Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST---LLDAPKLSDNNAIK 382
                IP F    G +           +Y   D  +++  +     +LD  +       +
Sbjct: 696 YSYMTIPVF--REGKIVSVVGVANKEGEYTDTDVYQLSLLMDAVWKVLDREEAESALHER 753

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
              L                   +                                +  I
Sbjct: 754 EAQLASLSDNLPQGMVYQLDSGSDGTIRHFTYLSAGVMKLHGVSPEQVLADANILYNQII 813

Query: 443 NKRKMEIEVMQLCSI 457
            + +  +   +  +I
Sbjct: 814 EEDRAVLAERENQAI 828



 Score = 84.7 bits (208), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 25/383 (6%), Positives = 92/383 (24%), Gaps = 31/383 (8%)

Query: 93  GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN---NHIGDLLKRQNTWYGKTTL 149
           G + E +    +       +++GM   D+     + P+         +   +    +   
Sbjct: 225 GIIVECNPAAEELFHRSRKELLGMHQSDLHPAGEVVPHTKTPQFCRQVASPDQVQ-EVRF 283

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
              +G      +  +   +  R          G+ H             + ++K+ H+  
Sbjct: 284 SRSDGDIRTALVRASVFHLQGR------ALILGVFHDITERKAFEEALIKSEQKWRHVLL 337

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRM--KNKVSSLTEYYAHKDDVLKTEKYPLLTS--- 264
                      K  +         L    ++++     +       ++ +   +  +   
Sbjct: 338 NTPQIGISLDVKAKVLFANQYFLDLTGWHEDEILGQDWFDLFIPTEVREQVRSVFDAVMS 397

Query: 265 ---EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY----LSHRNHPSLSAYFDE 317
                     + +  T    +           ++     +     +             +
Sbjct: 398 QQHIHGFSTYENEIMTRAGEKRVVSWANALTLDHKGYVIDVTCLGVDVTERRRAEQALRD 457

Query: 318 GENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
            E      V+      + + +   +   N +   +  Y+  + I     +   +   +  
Sbjct: 458 SEERYRRLVETANEGIWSINAEHVITLVNHAMAEMLGYEVKEIIGHK--VEDFIFPEEFD 515

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
            +          +             +     + L          +          +  +
Sbjct: 516 QHTEKMQARHAGAS------DIYERRLIRKDGSILWTIVSAKALTDDDGNFTGAFAMFTD 569

Query: 437 DVDTRINKRKMEIEVMQLCSILE 459
             + +  + K+     +L S++E
Sbjct: 570 ITERKHMEEKLRANESRLISLVE 592


>gi|313622400|gb|EFR92864.1| two-component sensor histidine kinase [Listeria innocua FSL J1-023]
          Length = 591

 Score =  325 bits (833), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 86/368 (23%), Positives = 175/368 (47%), Gaps = 29/368 (7%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           +++    +L +I++    G+ +IN +  ++ TNR + ++ G    +I  KPF   ++   
Sbjct: 246 EIKQNEQRLNAIVQNLVSGVMLINVDKQVIMTNRTMYQILG--ETEITGKPFYEVIKSFA 303

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISE 563
            S +        + + +   +K  +     E +L   +              L +HDI++
Sbjct: 304 LSQLIDA-----TFETKTMQQKEIILYFPREMILDASVSPILAENGEITGIILLLHDITQ 358

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            +  +N               +S+F+  VSHE++TP+TA+ GF+E + +   G + +   
Sbjct: 359 IRHLENV--------------RSEFVTNVSHELKTPVTALKGFAETLLD---GAMYDEML 401

Query: 624 -IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             ++   I    + +  ++ D+L +S+IE   +  + EPV +DE + ++   +   A EK
Sbjct: 402 LKKFLTIIKEESDRLHRLIMDILALSRIEQNPVTENIEPVDVDEVIEQSSRTIFEMATEK 461

Query: 683 RILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
            I +      N P I+  D   ++QI +N+LSNAI++TP  G++ +        EVI+ V
Sbjct: 462 NIQVSVPEKTNPPIIIETDRDKLQQILINLLSNAINYTPVDGKVEVKL-INQEAEVIIEV 520

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            D G+G+   ++++  + F ++  ++     GTGLGL + K +V+   G+  + S    G
Sbjct: 521 TDNGIGIPAKDIDRVFERFYRVDKARSRHSGGTGLGLSIVKHLVENCGGQIEVESQEEVG 580

Query: 802 TLIEIIFP 809
           +   +  P
Sbjct: 581 STFRVTLP 588


>gi|289625887|ref|ZP_06458841.1| PAS [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|330867533|gb|EGH02242.1| PAS protein [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 1185

 Score =  325 bits (833), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 124/749 (16%), Positives = 261/749 (34%), Gaps = 47/749 (6%)

Query: 75  VFDPIPRTVRFTWNI-DAHGYL-KEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH 132
            F+     V F++ + D    L   I+  L     +   +++G         L  D    
Sbjct: 218 KFESRLPPVGFSFAVRDDEQRLLTFINRALDSIEPSIGREVLGR-WTM---GLGADVEGQ 273

Query: 133 IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIY-SRNREFSGFRGFGIVHVNRVDN 191
              L        G    W ++  ++ +        IY  +N ++ G     +  ++R+  
Sbjct: 274 RIRL-------TGAERRWLLKHPSVTIATTQHPPYIYKDKNGQWVGLNADVLSRISRM-T 325

Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD 251
             + + + +      +  ++ G + +     +   ++     L         +  +  + 
Sbjct: 326 GLQFVHQEVPSTQQSIEVLRAGLAEMNTSLAENAERRR---FLDFTYSFGGNSWMFVVRS 382

Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
           +         L  +  +LP +   H +      +         ++ +    L        
Sbjct: 383 ERSSRVSLDSLAGKVLALPAR---HALEDLIRREHPLIQLRLVDTYDQARALVESGVADA 439

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
           +   +                 +++  G L  A  S            I+    L  +L+
Sbjct: 440 TIQNEG--------------GAYLFPAGQLKVA-RSVDGQWSPDRFSVIKTQPELLGILN 484

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
                   A    +  +   + +          W R        +           +  +
Sbjct: 485 KALEEFPVAELRSIRLKWLGSALP-----QPSLWGRIPQWVFWVLALALLTGLVSLVWSS 539

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
            ++ +       +R++  ++    ++ +   + I + + +G ++S NR+  +  G   E 
Sbjct: 540 RLKVQIRQRLKAERQLNDQLAFKHALFDGIPNPIYVRDLKGRLISCNRSYEQSLGISFEQ 599

Query: 492 ILRKPFT--VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
           +  +  T    + +     M+     +L        ++    S K   +    +      
Sbjct: 600 MNGRRLTDVNLIPRALAEQMHTDYLNLLENHQPVFSDRTIELSGKRMDVWQWTVPFFAAD 659

Query: 550 FS-SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                      DI+E K+ + +L  A ++A + +  KS FLA +SHEIRTP+ AIIG  E
Sbjct: 660 GQLQGLLGGWVDITERKRLEQQLQEAMRLAAQANEAKSVFLASMSHEIRTPMGAIIGLLE 719

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
           +           P          RS   ++ ++ + LD+++IE+G M L     SL    
Sbjct: 720 LECAHALRKGHTPSQG--LQVAHRSATELVALIGESLDLARIEAGGMQLSLTVTSLQALF 777

Query: 669 SEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIII 727
              I L    A EK + +R  F+         D   ++Q+  N+L NA+ FT  G  ++ 
Sbjct: 778 EGVIELFSAQAREKDLELRLEFSEQAQGDYWLDPLRLRQVLHNVLGNALKFTRQGSVVLR 837

Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
                 +  V + ++D+G G+     ++  +PF Q  +       G+GLGL + + +V  
Sbjct: 838 VAALDDSSRVRIGIQDSGEGIEPERQQQIFQPFTQASDDTAAHYGGSGLGLSITRQLVQL 897

Query: 788 NMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
             G   + S+P +GTL+ I  PL   S P
Sbjct: 898 MKGDISLHSSPGEGTLVNIDLPLVRVSEP 926


>gi|260221595|emb|CBA30317.1| hypothetical protein Csp_C22940 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 956

 Score =  325 bits (833), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 100/432 (23%), Positives = 182/432 (42%), Gaps = 26/432 (6%)

Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI-EPEDVDTRINKRK-----MEI 449
           A A +  +  + ++ L +         +  + +        + V  R  + +     +  
Sbjct: 23  AEASISHLVLDGQDLLTVIMRDVTDRLRAEQEIRTLNTNLEDQVAQRTARLESTMLALSD 82

Query: 450 EVMQL-------CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
           E  +L        +I E  + GI ++    +++  NR + +LFGY   ++L +P   +  
Sbjct: 83  EKQKLSLAHAEQRAIFEMATVGIVLM-VNRVVVQCNRNLEELFGYAPGELLGQPTRCWYP 141

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL---PFSSCYSLTMH 559
                       + L     +          K+  +   R+  +        +     + 
Sbjct: 142 SEESYEAMGRDVQALKDGG-RLQNTEMQMVRKDGTMFWARVSARVFATPDHRNAVLGVLE 200

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           DI+   + +  + HA + AE+ +  KS FLA +SHEIRTP+ AI+G S +++        
Sbjct: 201 DITPSYEARQAIEHAHQQAEEANRAKSSFLANMSHEIRTPMNAIMGMSYLVQKTEL---- 256

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
           N R   Y N I  S   +L I+ND+LD SKIE+GK+ +      LD+ +     LV   A
Sbjct: 257 NERQRGYLNKIQSSSQHLLGIINDILDYSKIEAGKLGIEHIEFELDKVLDNLAGLVGDKA 316

Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEV 737
             K + +       +P +++ D   + QI +N  +NA+ FT  G   I +     S   V
Sbjct: 317 ASKGLELVFDVDKQVPLQLVGDPLRLGQILVNYANNAVKFTERGEIDIRVRVQEESTSHV 376

Query: 738 I--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
           +    VRDTG+G++  +     + F Q   S   +  GTGLGL +++ +     G+  + 
Sbjct: 377 VLHFAVRDTGIGISEEQKSVLFQSFQQADASTTRKFGGTGLGLAISRQLAQMMEGEVGVD 436

Query: 796 STPAKGTLIEII 807
           ST  +G+     
Sbjct: 437 STFGQGSTFWFT 448


>gi|138896292|ref|YP_001126745.1| sensory box histidine kinase PhoR [Geobacillus thermodenitrificans
           NG80-2]
 gi|134267805|gb|ABO68000.1| Sensory box histidine kinase PhoR [Geobacillus thermodenitrificans
           NG80-2]
          Length = 583

 Score =  325 bits (833), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 98/395 (24%), Positives = 177/395 (44%), Gaps = 22/395 (5%)

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINK--RKMEIEVMQLCSILEATSDGIAIINREGII 474
                +   +           +   + +  R  EI+  +L +++E    G+  I+  G I
Sbjct: 205 AARVPDGEYKEAGMLVRSINRLARNLQEMSRAREIQTDRLHTLIENVGSGLLFIDHRGHI 264

Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
              NRA    F     D L +P+   L       +   +   ++    +   ++T+G  +
Sbjct: 265 HLINRAFQTYFHLDSSDCLYRPYADVLPHRDIIKLIDDI--FITETAMRRHMRLTIGIER 322

Query: 535 EEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
           +   +    II          +  HDI+E K+ +                + DF+A VSH
Sbjct: 323 KHFDVYGAPIIGTNAEWKGIVVVFHDITELKRLE--------------QIRKDFVANVSH 368

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           E++TP+T+I GF+E + +             +   I +    +  +V +LLD+SKIE   
Sbjct: 369 ELKTPVTSIKGFAETLLDGAM--KDEEALEHFLTIILKESERLQTLVEELLDLSKIEQHG 426

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714
             L  E V + E ++EA ++ +  A EK+I +R      +  I  D   +KQI +N+L+N
Sbjct: 427 FQLQLEDVDVAEVIAEAAAVFRQKAEEKQIDLRVEALPGL-VIRGDRNRLKQILINLLAN 485

Query: 715 AIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           A+ +TP  GQ+ +       E + + V+DTG+G+   E+ +  + F +I  ++     GT
Sbjct: 486 ALAYTPEHGQVAVEAEEKEKEVL-IHVKDTGIGIEEKEIPRIFERFYRIDKARSRDSGGT 544

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GLGL + K +V+A+ G   + S   +GT+  I FP
Sbjct: 545 GLGLSIVKHLVEAHHGYITVASEVGRGTVFTIHFP 579


>gi|77919955|ref|YP_357770.1| two component sensor histidine kinase [Pelobacter carbinolicus DSM
           2380]
 gi|77546038|gb|ABA89600.1| PAS/PAC sensor signal transduction histidine kinase [Pelobacter
           carbinolicus DSM 2380]
          Length = 827

 Score =  325 bits (833), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 99/598 (16%), Positives = 202/598 (33%), Gaps = 50/598 (8%)

Query: 233 HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL 292
           H  +              DD         + +E+S          ++ N    +     +
Sbjct: 262 HREIGRHWGPDNPAVFALDDPAVYLTDGAVENEQSCWQ-------VDGNMRAYRIIRTRV 314

Query: 293 QNNSKESFEYLSHRNHPS----LSAYFDEGENLTPETVDKCPIPFFVYSHG---NLFYAN 345
             +  +    L      +          + E    +      +   ++  G      Y +
Sbjct: 315 TGDDGQVEGLLGLAVDTTDCKKAERLLRQEERRFRDI--ALSVGDLIWEVGPDWRFRYVS 372

Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405
                +  YK+   I  +      L     +       V+    +            +Q 
Sbjct: 373 ERASSILGYKADALIGKS------LAELDNAAAAEAWQVLFRDWEENPKTFRNVEKWLQH 426

Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR-------KMEIEVMQLCSIL 458
                  +                  G+  +  + +  +        + E    ++ SI+
Sbjct: 427 KDGRRRCLMLSGLPIIEDDGSAGGFRGVAEDITERKQQEDNLKKALWEAEDGRDKIDSII 486

Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
            + +D + +I+    ++  N     LFG                      +   L E L+
Sbjct: 487 RSITDALVVIDDRQRVILLNPRAEALFGVTAAHAAGCLLGELCPDAEVQNVIMTLLENLT 546

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKL--PFSSCYSLTMHDISEWKQEKNKLSHAKK 576
               +       G +        R    +      +   +  HD+++ ++ +        
Sbjct: 547 DGGGEACFAWPGGDSTSPDYFKARASRMRNIQGDGTGAIVIFHDVTQEREME-------- 598

Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSE-VIKNQRFGPLGNPRYIEYANYIDRSGN 635
                   K++F++  +HE+RTPLT+I+G+ E  +  + FG   + +  E+   I     
Sbjct: 599 ------RVKTEFISTAAHELRTPLTSIMGYLEFCMHPEEFGGFSDAQLKEFMTEIYDKAE 652

Query: 636 LVLDIVNDLLDISKIESGK-MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
           ++  IV+DLLDIS++E+G+ + L  E V + E   + +   QL     R  +  + A   
Sbjct: 653 VLERIVSDLLDISRMEAGREIPLVLETVDVAEISRKLLQHFQLQFPRYRFEMEFA-AGTS 711

Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELE 754
             + AD   + Q+  NI+SNAI ++  G  + +           + VRD G+GMT  ++E
Sbjct: 712 HLVRADREKLVQVMENIISNAIKYSQEGKAVRVIGRCEPKCY-RISVRDQGIGMTPEQIE 770

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
           +    F +          G GLG+ + K +++ + G   + S P  GT I    PL +
Sbjct: 771 RMFDKFYRA-VDLNSGVRGLGLGMHIVKHIIERHGGGIEVVSAPGAGTEIIFSLPLCE 827



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 31/397 (7%), Positives = 95/397 (23%), Gaps = 37/397 (9%)

Query: 73  TFVFDPIPRTVRF-TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN 131
           + V D I +   F  W +D    +  +++++   +G    +++G    ++      D   
Sbjct: 216 SQVLDAIFKAAPFGMWLLDRKKEIVFVNKQMCDILGMSESQLLGRHHREIGRHWGPDNPA 275

Query: 132 HIG----DLLKRQNTWYGKTTLWPIEG--TNLYVPIDLAALPIYSRNREFSGFRGFGIVH 185
                   +         + + W ++G      +        +   + +  G  G  +  
Sbjct: 276 VFALDDPAVYLTDGAVENEQSCWQVDGNMRAYRIIRT----RVTGDDGQVEGLLGLAV-- 329

Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE 245
                     L ++ +++F  +              +           +      + + +
Sbjct: 330 DTTDCKKAERLLRQEERRFRDIALSVGDLIWEVGPDWRFRYVSERASSILGYKADALIGK 389

Query: 246 YYAHKDDVLKTEK-----YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF 300
             A  D+    E           + ++    ++     +  +         +  +   + 
Sbjct: 390 SLAELDNAAAAEAWQVLFRDWEENPKTFRNVEKWLQHKDGRRRCLMLSGLPIIEDDGSAG 449

Query: 301 EYLSHRNHPSLS-----------AYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSF 348
            +       +                ++G +     +         +     +   NP  
Sbjct: 450 GFRGVAEDITERKQQEDNLKKALWEAEDGRDKIDSIIRSITDALVVIDDRQRVILLNPRA 509

Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
             L    +          +  L      D      +M    + T     A       +  
Sbjct: 510 EALFGVTAA-------HAAGCLLGELCPDAEVQNVIMTLLENLTDGGGEACFAWPGGDST 562

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
           +            N   +      I  +    R  +R
Sbjct: 563 SPDYFKARASRMRNIQGDGTGAIVIFHDVTQEREMER 599



 Score = 57.3 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 27/197 (13%), Positives = 66/197 (33%), Gaps = 15/197 (7%)

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
                L +I +A   G+ +++R+  I+  N+ +  + G     +L +          P  
Sbjct: 214 RRSQVLDAIFKAAPFGMWLLDRKKEIVFVNKQMCDILGMSESQLLGRHHREIGRHWGPDN 273

Query: 509 MNHY-LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS----LTMHDISE 563
              + L +         +E        +  + + RII  ++               D ++
Sbjct: 274 PAVFALDDPAVYLTDGAVENEQSCWQVDGNMRAYRIIRTRVTGDDGQVEGLLGLAVDTTD 333

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI-------RTPLTAIIGF-SEVIKNQRF 615
            K+ +  L   ++     +    D +  V  +        R   ++I+G+ ++ +  +  
Sbjct: 334 CKKAERLLRQEERRFRDIALSVGDLIWEVGPDWRFRYVSERA--SSILGYKADALIGKSL 391

Query: 616 GPLGNPRYIEYANYIDR 632
             L N    E    + R
Sbjct: 392 AELDNAAAAEAWQVLFR 408


>gi|53804659|ref|YP_113669.1| sensory box histidine kinase/response regulator [Methylococcus
           capsulatus str. Bath]
 gi|53758420|gb|AAU92711.1| sensory box histidine kinase/response regulator [Methylococcus
           capsulatus str. Bath]
          Length = 1177

 Score =  325 bits (833), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 112/731 (15%), Positives = 229/731 (31%), Gaps = 90/731 (12%)

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
               G  L    + A       +    G     ++ +  +    + + +   +    L  
Sbjct: 40  LHRGGLELVRWQESAL------DGLLLGLFSAPLLWIMALRPLAQQIARESQRNKELLDA 93

Query: 210 IKK-GHSSVEKEKYDIFSQQS--PPPHLRMKNKVSSLTEYYAHKD--DVLKTEKYPLLTS 264
           +      S+   +  I              + ++        +                S
Sbjct: 94  LDAHALVSITDLQGRILYANDNFCAVSRYGREELVGQDHRIVNSGYHGKAYIRDMWRTIS 153

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
             +    +      +  +Y        L +N+ +  +Y+S R   +     +       +
Sbjct: 154 RGNIWQGEFCNRRKDGTRYWVDSTIVPLMDNAGKPRQYISIRRDITAQKEAEAQLARLKQ 213

Query: 325 TVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
            +D       +    G + YANP+    +     + +  +  +        L+D   +  
Sbjct: 214 AMDANSEMILLTDRAGRIIYANPALCRFSGMAEGELLGQSPSI----LDSPLADQETLAA 269

Query: 384 VMLYRSDRTCIAASARLHTIQW---NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
           +          +             +                     +    I+ +    
Sbjct: 270 MQEALQAGQPWSGRLLNRRRTGPAPHDAEDYWAEISTTPIHTDGNGLVGYVQIQHDVSAR 329

Query: 441 RINKRKMEIEVM----QLC---SILEATSD-----------------------GIAIINR 470
              +R + +E      +L    ++ ++                          GI +   
Sbjct: 330 VERERALAMEQEDTAARLRITETLQQSAPLDERCRQVLRILFELGTFGLQRKGGIFLKAE 389

Query: 471 EGIIL--------STNRAVSK---------LFGYPV-------EDILRKPFTVFLEQNTP 506
            G  L          +  V +         L G           D   +           
Sbjct: 390 HGNCLKLFVLEGKFCDEFVRREQTIPMGACLCGRSAVSGEILVSDDCFQDHRHEHRFEDM 449

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQ 566
               HY+  I S      L  + L +         R+++ +          + D     +
Sbjct: 450 ESHGHYIVPIASGGD--LLGVLFLYTDPNPTRSEARMVMLRQVGEMLALAILED-----R 502

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
            K  L  A   A   +  KS FLA +SHEIRTP+  ++G  E++K+            + 
Sbjct: 503 AKASLKAAHDAAVDAAQAKSAFLANMSHEIRTPMNGVLGMLELLKDTDMSR----EQWDL 558

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
                 S   +L+I+N +LD SK+E+GK+ +     +L + V E  +L+   A++K + +
Sbjct: 559 VETASNSAESLLEIINSILDFSKLEAGKVEIERTEFNLPDLVEEVCALLAGRAHDKGLEL 618

Query: 687 RTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRV 741
                 ++PR+   D   ++QI  N+L N++ FT  G ++ +            ++   +
Sbjct: 619 NCFLPADLPRMWIGDPTRIRQILTNLLGNSVKFTERG-EVSVKVMQGEAGAKRTDLSFEI 677

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
           RDTG+G+      +  +PF Q   S   R  GTGLGL + + +V+   G   + S P +G
Sbjct: 678 RDTGIGIAPDVQARLFQPFTQADGSTSRRFGGTGLGLSICRNLVELMGGTIGLESAPGRG 737

Query: 802 TLIEIIFPLYD 812
           +      PL  
Sbjct: 738 SRFWFTLPLEP 748



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/243 (9%), Positives = 59/243 (24%), Gaps = 11/243 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGKT 147
            D  G +   ++           +++G     V+   H       +   + R N W G+ 
Sbjct: 103 TDLQGRILYANDNFCAVSRYGREELVGQDHRIVNSGYHGKAYIRDMWRTISRGNIWQGEF 162

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH- 206
                +GT     +D   +P+     +   +    I        +  A   RL +     
Sbjct: 163 CNRRKDGT--RYWVDSTIVPLMDNAGKPRQY--ISIRRDITAQKEAEAQLARLKQAMDAN 218

Query: 207 -----LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
                L +                         +  + + S          + +  +   
Sbjct: 219 SEMILLTDRAGRIIYANPALCRFSGMAEGELLGQSPSILDSPLADQETLAAMQEALQAGQ 278

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
             S       +      +   Y  +     +  +      Y+  ++  S     +    +
Sbjct: 279 PWSGRLLNRRRTGPAPHDAEDYWAEISTTPIHTDGNGLVGYVQIQHDVSARVERERALAM 338

Query: 322 TPE 324
             E
Sbjct: 339 EQE 341



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 16/140 (11%), Positives = 38/140 (27%), Gaps = 7/140 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL-HIDPNNHIGDLLKRQNTWYGKT 147
            D  G +   +  L +  G    +++G     +   L   +    + + L+    W G+ 
Sbjct: 225 TDRAGRIIYANPALCRFSGMAEGELLGQSPSILDSPLADQETLAAMQEALQAGQPWSGRL 284

Query: 148 TLWPIEG----TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                 G           +++  PI++      G+    I H      +         + 
Sbjct: 285 LNRRRTGPAPHDAEDYWAEISTTPIHTDGNGLVGY--VQIQHDVSARVERERALAMEQED 342

Query: 204 FSHLHEIKKGHSSVEKEKYD 223
            +    I +           
Sbjct: 343 TAARLRITETLQQSAPLDER 362


>gi|289646215|ref|ZP_06477558.1| PAS [Pseudomonas syringae pv. aesculi str. 2250]
          Length = 1185

 Score =  325 bits (833), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 124/749 (16%), Positives = 261/749 (34%), Gaps = 47/749 (6%)

Query: 75  VFDPIPRTVRFTWNI-DAHGYL-KEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH 132
            F+     V F++ + D    L   I+  L     +   +++G         L  D    
Sbjct: 218 KFESRLPPVGFSFAVRDDEQRLLTFINRALDSIEPSIGREVLGR-WTM---GLGADVEGQ 273

Query: 133 IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIY-SRNREFSGFRGFGIVHVNRVDN 191
              L        G    W ++  ++ +        IY  +N ++ G     +  ++R+  
Sbjct: 274 RIRL-------TGAERRWLLKHPSVTIATTQHPPYIYKDKNGQWVGLNADVLSRISRM-T 325

Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD 251
             + + + +      +  ++ G + +     +   ++     L         +  +  + 
Sbjct: 326 GLQFVHQEVPSTQQSIEVLRAGLAEMNTSLAENAERRR---FLDFTYSFGGNSWMFVVRS 382

Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
           +         L  +  +LP +   H +      +         ++ +    L        
Sbjct: 383 ERSSRVSLDSLAGKVLALPAR---HALEDLIRREHPLIQLRLVDTYDQARALVESGVADA 439

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
           +   +                 +++  G L  A  S            I+    L  +L+
Sbjct: 440 TIQNEG--------------GAYLFPAGQLKVA-RSVDGQWSPDRFSVIKTQPELLGILN 484

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
                   A    +  +   + +          W R        +           +  +
Sbjct: 485 KALEEFPVAELRSIRLKWLGSALP-----QPSLWGRIPQWVFWVLALALLTGLVSLVWSS 539

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
            ++ +       +R++  ++    ++ +   + I + + +G ++S NR+  +  G   E 
Sbjct: 540 RLKVQIRQRLKAERQLNDQLAFKHALFDGIPNPIYVRDLKGRLISCNRSYEQSLGISFEQ 599

Query: 492 ILRKPFT--VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
           +  +  T    + +     M+     +L        ++    S K   +    +      
Sbjct: 600 MNGRRLTDVNLIPRALAEQMHTDYLNLLENHQPVFSDRTIELSGKRMDVWQWTVPFFAAD 659

Query: 550 FS-SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                      DI+E K+ + +L  A ++A + +  KS FLA +SHEIRTP+ AIIG  E
Sbjct: 660 GQLQGLLGGWVDITERKRLEQQLQEAMRLAAQANEAKSVFLASMSHEIRTPMGAIIGLLE 719

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
           +           P          RS   ++ ++ + LD+++IE+G M L     SL    
Sbjct: 720 LECAHALRKGHTPSQG--LQVAHRSATELVALIGESLDLARIEAGGMQLSLTVTSLQALF 777

Query: 669 SEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIII 727
              I L    A EK + +R  F+         D   ++Q+  N+L NA+ FT  G  ++ 
Sbjct: 778 EGVIELFSAQAREKDLELRLEFSEQAQGDYWLDPLRLRQVLHNVLGNALKFTRQGSVVLR 837

Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
                 +  V + ++D+G G+     ++  +PF Q  +       G+GLGL + + +V  
Sbjct: 838 VAALDDSSRVRIGIQDSGEGIEPERQQQIFQPFTQASDDTAAHYGGSGLGLSITRQLVQL 897

Query: 788 NMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
             G   + S+P +GTL+ I  PL   S P
Sbjct: 898 MKGDISLHSSPGEGTLVNIDLPLVRVSEP 926


>gi|254415523|ref|ZP_05029283.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196177704|gb|EDX72708.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 1568

 Score =  325 bits (833), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 134/758 (17%), Positives = 249/758 (32%), Gaps = 107/758 (14%)

Query: 86   TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ--NTW 143
             +  DA G    ++    +  G    + IG    +         N  +   L  +  +  
Sbjct: 470  IFQTDATGVWTFLNPAWTEITGFTLGESIGTNFLEYIHPDDRQRNVELFQPLLERKKDYC 529

Query: 144  YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
              +      +G   Y  I++ A   ++ +   +G  G   +          A  K  ++K
Sbjct: 530  QHEVRYLTKDGG--YRWIEVHAQLTFAPDNTITGTSG--TLRDITHYKWADAQLKASEQK 585

Query: 204  FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
               + ++       + ++                          A  D    T +  L  
Sbjct: 586  LRQVIDLVPHFIFAKNKEGQFILVN------------------QAVADTYGTTVEALLDQ 627

Query: 264  SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
             E    P  +D H              TL    +                          
Sbjct: 628  PETEVAPSVDDAHQYREADLHVITSGETLYIPEETITNAQGETR---------------- 671

Query: 324  ETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
              +    IPFFV           S  +  + ++   ++     + LL           + 
Sbjct: 672  -ILQTTKIPFFVADSDVPAVLGVSIDISDRKQAEIALQQQLMRTVLL-------KQITQE 723

Query: 384  VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
            +    + +     +A     +    N   +     E     P          E +     
Sbjct: 724  IRRSLNTKEIFQTTAT-QIGRAFGVNRCVIHTYLTEPTPAIPFVAEYLETGYESILQLEV 782

Query: 444  KRKMEIEVMQL----CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
              +    V QL     +I  ++ D     +    +L     +    G            +
Sbjct: 783  PIRGNSHVQQLLKQDKAI--SSPD--VYADP---LLLCCTQMCCQIGLKSM------LAI 829

Query: 500  FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH 559
                         L +  S     + E   L +  +     + I I +       +    
Sbjct: 830  RTSYQGEPNGIIGLHQCDSYRHWSSHEIELLEAVAD----QVGIAIAQAHLWEQETRQRQ 885

Query: 560  DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
             ++E       L  A++ AE  +  KS+FLA +SHEIRTP+ A+IG + ++ +       
Sbjct: 886  QLTEQ---NVALEKARQTAEAATQAKSEFLATMSHEIRTPMNAVIGMTGLLLDTELTS-- 940

Query: 620  NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
                  +A  I  SG+ +L I+ND+LD SKIESGKM L  +P  L   + EA+ L+   A
Sbjct: 941  --DQRYFAETIRNSGDALLTIINDILDFSKIESGKMELEEQPFELRTCIEEALDLLTTKA 998

Query: 680  NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH------T 732
             EK + +     +  P  I  D+  ++QI +N++SNA+ FTP+G ++++S T        
Sbjct: 999  AEKNLELAYLIDSQTPNWIAGDVTRLRQILVNLISNAVKFTPTG-EVLVSVTAQILADEE 1057

Query: 733  SNE---EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
                  ++   V+DTG+G+    + +  K F Q+ +S   +  GTGLGL + K + +   
Sbjct: 1058 DRGDRYQLQFAVKDTGIGIPVDRIHRLFKSFSQVDSSTSRQYGGTGLGLAICKRLCEMMG 1117

Query: 790  GKFYIFS-------------------TPAKGTLIEIIF 808
            G+ ++ S                     + G+      
Sbjct: 1118 GQMWVESGGSVAGNPPAGWIATDSGEESSGGSTFYFTI 1155



 Score =  131 bits (330), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 60/576 (10%), Positives = 161/576 (27%), Gaps = 42/576 (7%)

Query: 43  NPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEEL 102
               +    +  T   Q S+S  NY       V           +     G    ++   
Sbjct: 181 EELVEERTAALQTANEQLSLSQANYRSIFENAVEG--------IFQRTPDGIYISVNPAF 232

Query: 103 PKTIGNYAFKMIGMRLCDVSDILHIDPNN--HIGDLLKRQNTWYGKTTLWPIEGTNLYVP 160
            + +G  +       + ++   L+++P++   +  L++++            +     + 
Sbjct: 233 AQILGYASPSHFLNSIKNIEQQLYVNPDDHRRLTKLIQQKKAVSKFEIQVYRQ-DGQKIW 291

Query: 161 IDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKE 220
           I      +   +     + G   +             +  +++F  L +       +   
Sbjct: 292 IRKNTRAVIDLSENILYYEG--SIEDITESKLAEERLRESEERFRLLADTAPVLIWLAGT 349

Query: 221 KYDIFSQQSP---PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS-EESSLPEQEDFH 276
               +             +  ++        H DD     +        +     +    
Sbjct: 350 DSRCYFFNKTWLEFTGRTLDKEIGDGWTDGVHPDDYHYCIETYSNAFKAQKRFRMEYRLR 409

Query: 277 TINLNQYT----KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP 332
             + N           F +  + +  +   +   +   +     E E      ++     
Sbjct: 410 RHDGNYRWILDTGVPRFTSTGHFAGYTGSCIDITDRKQVEERLRESEENYRSVIESVKEV 469

Query: 333 FFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR 391
            F     G   + NP++  +T +   + I     L  +    +  +    +P++  + D 
Sbjct: 470 IFQTDATGVWTFLNPAWTEITGFTLGESI-GTNFLEYIHPDDRQRNVELFQPLLERKKD- 527

Query: 392 TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV 451
                                +                 +G   +    +    +++   
Sbjct: 528 ----YCQHEVRYLTKDGGYRWIEVHAQLTFAPDNTITGTSGTLRDITHYKWADAQLKASE 583

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ-NTPSVMN 510
            +L  +++     I   N+EG  +  N+AV+  +G  VE +L +P T      +      
Sbjct: 584 QKLRQVIDLVPHFIFAKNKEGQFILVNQAVADTYGTTVEALLDQPETEVAPSVDDAHQYR 643

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK----LPFSSCYSLTMHDISEWKQ 566
                +++      + + T+    + +   L+                     DIS+ KQ
Sbjct: 644 EADLHVITSGETLYIPEETIT-NAQGETRILQTTKIPFFVADSDVPAVLGVSIDISDRKQ 702

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
            +  L        ++   ++  L +++ EIR  L  
Sbjct: 703 AEIAL--------QQQLMRTVLLKQITQEIRRSLNT 730



 Score = 88.5 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 29/334 (8%), Positives = 91/334 (27%), Gaps = 22/334 (6%)

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
            T  + ++ E ++           + +   L      + +  + +   S + Y    EN 
Sbjct: 153 RTMRDRAIAEIKERQRTEEELADYRNHLEELVEERTAALQTANEQLSLSQANYRSIFENA 212

Query: 322 TPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEI--AGGLSTLLDAPKLSDNN 379
                 + P   ++         NP+F  +  Y S              L   P      
Sbjct: 213 VEGIFQRTPDGIYIS-------VNPAFAQILGYASPSHFLNSIKNIEQQLYVNPDDHR-- 263

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
                 L +  +   A S     +       + +        +     +   G   +  +
Sbjct: 264 -----RLTKLIQQKKAVSKFEIQVYRQDGQKIWIRKNTRAVIDLSENILYYEGSIEDITE 318

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
           +++ + ++     +   + +     I +   +      N+   +  G  ++  +   +T 
Sbjct: 319 SKLAEERLRESEERFRLLADTAPVLIWLAGTDSRCYFFNKTWLEFTGRTLDKEIGDGWTD 378

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK----LPFSSCYS 555
            +  +         +       ++           +     +              + Y+
Sbjct: 379 GVHPDDYHYCIETYSNAFK--AQKRFRMEYRLRRHDGNYRWILDTGVPRFTSTGHFAGYT 436

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
            +  DI++ KQ + +L  +++          + +
Sbjct: 437 GSCIDITDRKQVEERLRESEENYRSVIESVKEVI 470



 Score = 70.4 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/296 (12%), Positives = 78/296 (26%), Gaps = 55/296 (18%)

Query: 325 TVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
            +D+ PI   V      + Y N      T       +     ++                
Sbjct: 29  VLDQVPIGNCVLRSDLVVLYWNRCLENWTHLSKQQILGQK--ITDHFPHLNHPKYTTRLQ 86

Query: 384 VMLYRSDRTCIAASARLHTIQ---------------------WNRENSLAMTFIPFEKAN 422
            +      T  ++   +H I                       + E    ++     +  
Sbjct: 87  QIFTGGPPTVFSSQLHVHLIPAPLADGSLRIQHTTVTAVPSEKDGEYYALLSIQDVTELT 146

Query: 423 QFPENMP--QNGIEPEDVDTRINKRKMEIEVMQL-------------------------C 455
           Q   N    ++    E  + +  + ++      L                          
Sbjct: 147 QQVHNYRTMRDRAIAEIKERQRTEEELADYRNHLEELVEERTAALQTANEQLSLSQANYR 206

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           SI E   +GI     +GI +S N A +++ GY              +Q   +  +H    
Sbjct: 207 SIFENAVEGIFQRTPDGIYISVNPAFAQILGYASPSHFLNSIKNIEQQLYVNPDDHRRLT 266

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSL----RIIIKKLPFSSCYSLTMHDISEWKQE 567
            L    +   +       ++ + + +    R +I        Y  ++ DI+E K  
Sbjct: 267 KLIQQKKAVSKFEIQVYRQDGQKIWIRKNTRAVIDLSENILYYEGSIEDITESKLA 322



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/190 (12%), Positives = 53/190 (27%), Gaps = 24/190 (12%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
             +++    Q   +L+    G  ++  + ++L  NR +        + IL +  T     
Sbjct: 17  ATEIQTAAHQFH-VLDQVPIGNCVLRSDLVVLYWNRCLENWTHLSKQQILGQKITDHFPH 75

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGS-------TKEEKLLSLRIIIKKLPFSSCYSL 556
                    L +I +                         ++    +          Y  
Sbjct: 76  LNHPKYTTRLQQIFTGGPPTVFSSQLHVHLIPAPLADGSLRIQHTTVTAVPSEKDGEYYA 135

Query: 557 T--MHDISEWKQEKNKLSHAKKIAEKESSHK---SDFLARVSHEIRTPLTAIIGFSEVIK 611
              + D++E  Q+ +     +  A  E   +    + LA    + R  L       E + 
Sbjct: 136 LLSIQDVTELTQQVHNYRTMRDRAIAEIKERQRTEEELA----DYRNHL-------EELV 184

Query: 612 NQRFGPLGNP 621
            +R   L   
Sbjct: 185 EERTAALQTA 194


>gi|188580981|ref|YP_001924426.1| multi-sensor hybrid histidine kinase [Methylobacterium populi
           BJ001]
 gi|179344479|gb|ACB79891.1| multi-sensor hybrid histidine kinase [Methylobacterium populi
           BJ001]
          Length = 1120

 Score =  325 bits (833), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 121/714 (16%), Positives = 230/714 (32%), Gaps = 57/714 (7%)

Query: 124 ILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI 183
                P++     L+              +       +  +   +   +      +G  I
Sbjct: 134 PRDFTPDD--AAALRDLAEIVTAQMRLRRDN-----LVTASEKALRRIHESTIRAQGVEI 186

Query: 184 VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL 243
               R   +          +  H          +  E     +   P       + ++ L
Sbjct: 187 --EQRASANSLLTMAEQIAQVGHWRINFASGHPLYSESLLRIAGLDPEAPAAQHSHLAEL 244

Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303
                  D            +       +  F   +              + +  +    
Sbjct: 245 ---CHPADRGRVEAVIAAAIAGGGDFEFEARFARPDGTVRDVMVRGTGKTDEAGRTIGLF 301

Query: 304 SH----RNHPSLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSV 357
                  +   + A     E       D  P+  +      G   Y N  F         
Sbjct: 302 GILMDVTDRLRIQAEMRHSEMRYRSLADALPLLVWTVDPESGEATYVNTRFADYYGP--- 358

Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
                      L                  R+         RL   +        ++  P
Sbjct: 359 ---IGLSREQRLARNHPDDAPAMEAAWEAARTSGQGYDGQWRLRA-RDGSYRWHKLSLTP 414

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
              A    E     G   +  +    +  ME     L   LE    G    N    I   
Sbjct: 415 IRSAANPAEVTEWIGTALDIDEIVSARLAMEDTSRLLGIALEGAEAGTFDWNLRTGITLL 474

Query: 478 NRAVSKLFGYP----VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
           +    +L+G P       +    +T  +  +      +++   +    R T E       
Sbjct: 475 SPESVRLYGLPETGGPRALSPTEWTATIHPDDVVEAWNHIHHAVDSRSRFTAEYRV---- 530

Query: 534 KEEKLLSLRIIIKKLPFSSCY--SLTMHDISEWKQEKNKLSHAKK-------IAEKESSH 584
             E+ L              Y       DI++ K  +  L  A          AE+ S+ 
Sbjct: 531 -GERWLYTSGRTLYDGEGRPYRMLGLHLDITDRKAAEAALRAATAEARAATVEAERASAA 589

Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
           KS+FLA +SHEIRTPL  I+G+++++ ++   P  +P        I  SG ++L +VND+
Sbjct: 590 KSEFLAAMSHEIRTPLNGILGYADLLLDR---PERDPEDQRRLELIRVSGEVLLTVVNDV 646

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRS 703
           LD+SKIE+G++ L   P +L + + + +++++  A +  + +      N+P  ++ D   
Sbjct: 647 LDVSKIEAGQLALDPLPFALGKLIEDTVAIIRGSALKSALTVEARIDRNLPASVIGDANR 706

Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHT---------SNEEVILRVRDTGVGMTNYELE 754
           ++Q+  N+L+NA+ FTP+G  + ++  +            E +   +RDTG+G+   +  
Sbjct: 707 LRQVLFNLLNNAVKFTPAGS-VTLTVRYEGSVRDAEGGRREALRFEIRDTGIGIAPSQQH 765

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           +  KPF Q+  S   R  G+GLGL + + +V    G   + S    G++     
Sbjct: 766 RLFKPFSQVDGSISRRFGGSGLGLAICQRLVTMMGGAIGVESVEGVGSIFWFTL 819



 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/417 (10%), Positives = 85/417 (20%), Gaps = 25/417 (5%)

Query: 56  DQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAH-GYLKEISEELPKTIGNYAFKMI 114
           D             SE  +        +   W +D   G    ++       G      I
Sbjct: 306 DVTDRLRIQAEMRHSEMRYRSLADALPL-LVWTVDPESGEATYVNTRFADYYGP-----I 359

Query: 115 GMRLCDVSDILHIDPNNHIGDLLKRQNTW-YGKTTLWPIEGTNL-YVPIDLAALPIYSRN 172
           G+         H D    +    +   T   G    W +   +  Y    L+  PI S  
Sbjct: 360 GLSREQRLARNHPDDAPAMEAAWEAARTSGQGYDGQWRLRARDGSYRWHKLSLTPIRSAA 419

Query: 173 REFSGFRGFGIVHVNRV-DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231
                    G         +   A+          L   + G                  
Sbjct: 420 NPAEVTEWIGTALDIDEIVSARLAMEDTSRLLGIALEGAEAGTFDWNLRTGITLLSPESV 479

Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEK--YPLLTSEESSLPEQEDFHTINLNQYTKKQYF 289
               +                 +  +           +            + +       
Sbjct: 480 RLYGLPETGGPRALSPTEWTATIHPDDVVEAWNHIHHAVDSRSRFTAEYRVGERWLYTSG 539

Query: 290 GTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFL 349
            TL +     +  L      +     +              +            A   FL
Sbjct: 540 RTLYDGEGRPYRMLGLHLDITDRKAAEAALRAATAEARAATV-----EAERASAAKSEFL 594

Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC-IAASARLHTIQWNRE 408
               ++    +    G + LL      D    + + L R      +     +  +     
Sbjct: 595 AAMSHEIRTPLNGILGYADLLLDRPERDPEDQRRLELIRVSGEVLLTVVNDVLDVSKIEA 654

Query: 409 NSLAMTFIPFEKAN---QFPENMPQNGIEPEDVDTRINKRKMEIE----VMQLCSIL 458
             LA+  +PF            +  + ++          R +         +L  +L
Sbjct: 655 GQLALDPLPFALGKLIEDTVAIIRGSALKSALTVEARIDRNLPASVIGDANRLRQVL 711


>gi|32477912|ref|NP_870906.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
 gi|32448469|emb|CAD77984.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
          Length = 1122

 Score =  325 bits (833), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 133/857 (15%), Positives = 290/857 (33%), Gaps = 93/857 (10%)

Query: 19  KGNTQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDP 78
           +G  Q   +  ID       +  +   H S + S      Q   +  +        +   
Sbjct: 109 QGVPQRQPEGSIDCWVLMSSAIDDPGTHQSKQASLSESAGQPKTARQSEAAEREAHLRRV 168

Query: 79  IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLL 137
           I   +     ID  G L E+ +   +        +IG    +             + + +
Sbjct: 169 INHQLGLVGVIDRDGILVEVDDRSLEIAKVARQDVIGKHFAEAPWWTYDPRVAARVREAM 228

Query: 138 KRQNTWYGKTTLWPIEG---TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR 194
           +R   + G+   + +         V ID    P+ +   E       G     R  +   
Sbjct: 229 QR--AFAGEVVRFDVSLFAYGEEGVRIDFMIAPVINDEGEVEFLIPSGT--DIRDRHRAE 284

Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK-------VSSLTEYY 247
              ++ ++    + E       +      +         +   +        +  L  ++
Sbjct: 285 VELRKSERLVRTIAENSTQGLVMMDATGHVIYCNQALLDMTGFDSEEIRSAPLHDLIHHH 344

Query: 248 AHKDDVLKTEKYPLLTSEESSLP---EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
                     + P+  +          ++ F   + + ++       +  + K     + 
Sbjct: 345 YPDGRPYPMSECPIDRALPEDFSVRAHEDLFFRKDGSSFSVVCAASPIFEDGKPVSTVIE 404

Query: 305 HRN---HPSLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDD 359
            R+     +             +++    I  + +      L    P    +  +    D
Sbjct: 405 VRDTTVQKAHEVELKRAAARLDKSLAFAGIAAWGWDHSEQRLILDVP-LRRMWGFDDEQD 463

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
           + +      +    +     +I   M         ++    +TI     N   +  I   
Sbjct: 464 VTLDDFAQRITPNHRDRVVASITNAM------KTFSSYREEYTIDLPSGNQRWIRAIGQV 517

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
            A+         G+  +       + K  +    L  + E       + + E I+    +
Sbjct: 518 VADGNGGIADFFGVTMDVTADLRRQVKARVRSELLEQLSE-------LTDPEAIMQLATQ 570

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE-EKL 538
            + K F      +          +      + +L+ I+     +           E  K 
Sbjct: 571 RIRKHFSASRCYLAYIRLDAQTTEVFHESHDEHLSPIVGTHQIRDFLNDHEMREIESGKP 630

Query: 539 LSLRIIIK----------------------------------------KLPFSSCYSLTM 558
           + +  I +                                           +       +
Sbjct: 631 VRIDDISQSGRSSEKVQQFADLGIAAVTQGSFEATKVLHRTLFITKDKPYRWRDDEVRFL 690

Query: 559 HDISE-------WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
            +++E         + + +L  A+ +AE  S  KS F+A +SHEIRTP+TAI+G++++++
Sbjct: 691 DNLTEMVYLRIERAESQLELEQARAVAEAASQSKSAFVANMSHEIRTPMTAILGYADLVR 750

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
           +     + +P+ IE+   I R+G+ +L+I+ND+LD+SKIE+GK+ ++ E       + + 
Sbjct: 751 DM----IEDPQAIEHLETIRRNGDYLLEIINDILDLSKIEAGKLEVNHEKFEPARLIEDV 806

Query: 672 ISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
            S++++ A E  + +   +   +P  I +D + +KQI +N++ NAI FT  G    +   
Sbjct: 807 RSIMEVRAKEGGLSLDVQYIGLLPKTIESDGKRLKQILINLVGNAIKFTQKG---WVQIR 863

Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
              N+ + + + DTG+GM++ + ++  KPF Q   S      GTGLGL ++K + +   G
Sbjct: 864 VRFNKLLHIDIVDTGIGMSDEQQKRLFKPFSQGDASVTRTFGGTGLGLAISKRLTEMLGG 923

Query: 791 KFYIFSTPAKGTLIEII 807
                ST   G+   + 
Sbjct: 924 TIIASSTEGVGSTFTVS 940



 Score =  110 bits (275), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 42/431 (9%), Positives = 107/431 (24%), Gaps = 42/431 (9%)

Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP--PPHLRMKNKVSSLTEYY-AHKDD 252
                 + F  L E       +                   +  ++++S       H +D
Sbjct: 14  ASVAGQEAFRLLAEASSRIVWIADCDGKFIEDSPSWRAFTGQTIDQLASTRWLDTVHPED 73

Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP--- 309
                     +  +  +  +      +      +      +        ++   +     
Sbjct: 74  QRSVADALKDSRRDGGVSVEFRLRRHDGAFIGVQVQGVPQRQPEGSIDCWVLMSSAIDDP 133

Query: 310 --------------------SLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFL 349
                                 S   +   +L      +  +   +   G L   +   L
Sbjct: 134 GTHQSKQASLSESAGQPKTARQSEAAEREAHLRRVINHQLGLVGVIDRDGILVEVDDRSL 193

Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
            + K    D I                    ++  M        +     L       E 
Sbjct: 194 EIAKVARQDVI-GKHFAEAPWWTYDPRVAARVREAMQRAFAGEVVRFDVSLFAY---GEE 249

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469
            + + F+     N   E         +  D    + ++      + +I E ++ G+ +++
Sbjct: 250 GVRIDFMIAPVINDEGEVEFLIPSGTDIRDRHRAEVELRKSERLVRTIAENSTQGLVMMD 309

Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR----QTL 525
             G ++  N+A+  + G+  E+I   P    +  + P    + ++E              
Sbjct: 310 ATGHVIYCNQALLDMTGFDSEEIRSAPLHDLIHHHYPDGRPYPMSECPIDRALPEDFSVR 369

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKES 582
               L   K+    S+      +          + + D +  K  + +L           
Sbjct: 370 AHEDLFFRKDGSSFSVVCAASPIFEDGKPVSTVIEVRDTTVQKAHEVELKR-----AAAR 424

Query: 583 SHKSDFLARVS 593
             KS   A ++
Sbjct: 425 LDKSLAFAGIA 435



 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 51/567 (8%), Positives = 140/567 (24%), Gaps = 47/567 (8%)

Query: 55  TDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI 114
           TD +   +       +           + R  W  D  G   E S       G    ++ 
Sbjct: 2   TDPDSPLIVGVGASVAGQEAFRLLAEASSRIVWIADCDGKFIEDSPSWRAFTGQTIDQLA 61

Query: 115 GMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTN-LYVPIDLAALPIYSRNR 173
             R  D            + D LK      G +  + +   +  ++ + +  +P      
Sbjct: 62  STRWLDTVHPED---QRSVADALKDSRRDGGVSVEFRLRRHDGAFIGVQVQGVPQRQPEG 118

Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH 233
               +        +   +  +                 +     E+E +           
Sbjct: 119 SIDCWVLMSSAIDDPGTHQSKQASLSESAGQPKTARQSEA---AEREAHLRRVINHQLGL 175

Query: 234 LRMKNKVSSLTEYYAHKDDVLKTEKYP-----------LLTSEESSLPEQEDFHTINLNQ 282
           + + ++   L E      ++ K  +                    +   +E        +
Sbjct: 176 VGVIDRDGILVEVDDRSLEIAKVARQDVIGKHFAEAPWWTYDPRVAARVREAMQRAFAGE 235

Query: 283 YTKKQYFGTLQNNSKES-------------------FEYLSHRNHPSLSAYFDEGENLTP 323
             +                                       R+         + E L  
Sbjct: 236 VVRFDVSLFAYGEEGVRIDFMIAPVINDEGEVEFLIPSGTDIRDRHRAEVELRKSERLVR 295

Query: 324 ETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
              +        + + G++ Y N + L +T + S ++I  A     +           + 
Sbjct: 296 TIAENSTQGLVMMDATGHVIYCNQALLDMTGFDS-EEIRSAPLHDLIHHHYPDGRPYPMS 354

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
              + R+     +  A          +S ++         +  + +       +    + 
Sbjct: 355 ECPIDRALPEDFSVRAHEDLFFRKDGSSFSVVCAASPIF-EDGKPVSTVIEVRDTTVQKA 413

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGI--ILSTNRAVSKLFGYPVE-DILRKPFTV 499
           ++ +++    +L   L          +      IL     + +++G+  E D+    F  
Sbjct: 414 HEVELKRAAARLDKSLAFAGIAAWGWDHSEQRLILDV--PLRRMWGFDDEQDVTLDDFAQ 471

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLT 557
            +  N    +   +T  +        E      +  ++ +     +          +   
Sbjct: 472 RITPNHRDRVVASITNAMKTFSSYREEYTIDLPSGNQRWIRAIGQVVADGNGGIADFFGV 531

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSH 584
             D++   + + K     ++ E+ S  
Sbjct: 532 TMDVTADLRRQVKARVRSELLEQLSEL 558


>gi|282924834|ref|ZP_06332500.1| two-component system, OmpR family, phosphate regulon sensor
           histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus C101]
 gi|282313200|gb|EFB43596.1| two-component system, OmpR family, phosphate regulon sensor
           histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus C101]
          Length = 554

 Score =  325 bits (833), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 86/398 (21%), Positives = 167/398 (41%), Gaps = 33/398 (8%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEI--EVMQLCSILEATSDGIAIINREGIIL 475
                          +   D+  R+ K   E   +  +L + +E     I +I+R G I+
Sbjct: 178 IRVPESNVVETKALFVSTNDLARRLQKLNNEQKIQSNRLKTTIENIPSAILMIDRNGKIV 237

Query: 476 STNRAVSKLFGYPVEDILRKPFTVF-LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
             N+A  + F                      + +   + E   ++     +     +  
Sbjct: 238 VANKAYYEQFNIS------HNIEQVGYHGYVNTEIEQLILESFKVEKPIYEQLEVAINQV 291

Query: 535 EEKLLSLRIIIKKLPFS---SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
             K   +  +              + MHDI+  KQ +              + + +F+A 
Sbjct: 292 HAKYFDISCVPILTRSQKSLQGILVVMHDITNLKQLE--------------NLRREFVAN 337

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKI 650
           VSHE++TP+T+I GF+E + +   G   +   ++ + N I +  N +  +V DLLD+S I
Sbjct: 338 VSHELKTPITSIKGFAETLID---GAKNDAESLDMFLNIILKESNRIESLVTDLLDLSHI 394

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710
           E     L  + ++L +     I  +   AN+K I I T    ++  + A    + Q+  N
Sbjct: 395 E-QHTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTEIEKDVI-VKAQESKIAQVITN 452

Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           +L+NAI+++   G I +   +  +  VI  V+D G+G+   + ++  + F ++  ++   
Sbjct: 453 LLTNAINYSYEDGDINVRV-YRDDFRVIFEVQDFGIGIKLEDQQRIFERFYRVDKARSRD 511

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
             GTGLGL + K +V+A+ G   + S   KG+  ++I 
Sbjct: 512 SGGTGLGLSITKHIVEAHQGNIEVNSQVGKGSTFKVIL 549


>gi|49483934|ref|YP_041158.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus MRSA252]
 gi|257425807|ref|ZP_05602231.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus 55/2053]
 gi|257428473|ref|ZP_05604871.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus 65-1322]
 gi|257431107|ref|ZP_05607484.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus 68-397]
 gi|257433790|ref|ZP_05610148.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus E1410]
 gi|257436706|ref|ZP_05612750.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus M876]
 gi|282904263|ref|ZP_06312151.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus C160]
 gi|282906088|ref|ZP_06313943.1| two-component system OmpR family phosphate regulon sensor histidine
           kinase PhoR [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282909003|ref|ZP_06316821.1| phosphate regulon sensor kinase PhoR [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282911319|ref|ZP_06319121.1| phosphate regulon sensor kinase PhoR [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282914488|ref|ZP_06322274.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus M899]
 gi|282919457|ref|ZP_06327192.1| two-component system, OmpR family, phosphate regulon sensor
           histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus C427]
 gi|283958443|ref|ZP_06375894.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|293503566|ref|ZP_06667413.1| two-component system, OmpR family, phosphate regulon sensor
           histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293510581|ref|ZP_06669286.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus M809]
 gi|293537123|ref|ZP_06671803.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus M1015]
 gi|295428263|ref|ZP_06820892.1| two-component system [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297590774|ref|ZP_06949412.1| phosphate regulon sensor histidine kinase protein PhoR
           [Staphylococcus aureus subsp. aureus MN8]
 gi|49242063|emb|CAG40762.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus MRSA252]
 gi|257271501|gb|EEV03647.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus 55/2053]
 gi|257275314|gb|EEV06801.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus 65-1322]
 gi|257278055|gb|EEV08703.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus 68-397]
 gi|257281883|gb|EEV12020.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus E1410]
 gi|257284057|gb|EEV14180.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus M876]
 gi|282317267|gb|EFB47641.1| two-component system, OmpR family, phosphate regulon sensor
           histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus C427]
 gi|282321669|gb|EFB51994.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus M899]
 gi|282325014|gb|EFB55324.1| phosphate regulon sensor kinase PhoR [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282327267|gb|EFB57562.1| phosphate regulon sensor kinase PhoR [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282331380|gb|EFB60894.1| two-component system OmpR family phosphate regulon sensor histidine
           kinase PhoR [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282595881|gb|EFC00845.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus C160]
 gi|283790592|gb|EFC29409.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|290919968|gb|EFD97036.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291095232|gb|EFE25497.1| two-component system, OmpR family, phosphate regulon sensor
           histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291466472|gb|EFF08993.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus M809]
 gi|295127663|gb|EFG57300.1| two-component system [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297575660|gb|EFH94376.1| phosphate regulon sensor histidine kinase protein PhoR
           [Staphylococcus aureus subsp. aureus MN8]
 gi|312437850|gb|ADQ76921.1| phosphate regulon sensor histidine kinase protein PhoR
           [Staphylococcus aureus subsp. aureus TCH60]
          Length = 554

 Score =  325 bits (833), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 86/398 (21%), Positives = 167/398 (41%), Gaps = 33/398 (8%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEI--EVMQLCSILEATSDGIAIINREGIIL 475
                          +   D+  R+ K   E   +  +L + +E     I +I+R G I+
Sbjct: 178 IRVPESNVVETKALFVSTNDLARRLQKLNNEQKIQSNRLKTTIENIPSAILMIDRNGKIV 237

Query: 476 STNRAVSKLFGYPVEDILRKPFTVF-LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
             N+A  + F                      + +   + E   ++     +     +  
Sbjct: 238 VANKAYYEQFNIS------HNIEQVGYHGYVNTEIEQLILESFKVEKPIYEQLEVAINQV 291

Query: 535 EEKLLSLRIIIKKLPFS---SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
             K   +  +              + MHDI+  KQ +              + + +F+A 
Sbjct: 292 HAKYFDISCVPILTRSQKSLQGILVVMHDITNLKQLE--------------NLRREFVAN 337

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKI 650
           VSHE++TP+T+I GF+E + +   G   +   ++ + N I +  N +  +V DLLD+S I
Sbjct: 338 VSHELKTPITSIKGFAETLID---GAKNDAESLDMFLNIILKESNRIESLVTDLLDLSHI 394

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710
           E     L  + ++L +     I  +   AN+K I I T    ++  + A    + Q+  N
Sbjct: 395 E-QHTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTEIEKDVI-VKAQESKIAQVITN 452

Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           +L+NAI+++   G I +   +  +  VI  V+D G+G+   + ++  + F ++  ++   
Sbjct: 453 LLTNAINYSYEDGDINVRV-YRDDFRVIFEVQDFGIGIKLEDQQRIFERFYRVDKARSRD 511

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
             GTGLGL + K +V+A+ G   + S   KG+  ++I 
Sbjct: 512 SGGTGLGLSITKHIVEAHQGNIEVNSQVGKGSTFKVIL 549


>gi|32401164|gb|AAP80772.1|AF525283_4 MmoS [Methylococcus capsulatus]
          Length = 1177

 Score =  325 bits (833), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 109/709 (15%), Positives = 225/709 (31%), Gaps = 84/709 (11%)

Query: 172 NREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK-GHSSVEKEKYDIFSQQS- 229
           +    G     ++ +  +    + + +   +    L  +      S+   +  I      
Sbjct: 56  DGLLLGLFSAPLLWIMALRPLAQQIARESQRNKELLDALDAHALVSITDLQGRILYANDN 115

Query: 230 -PPPHLRMKNKVSSLTEYYAHKD--DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKK 286
                   + ++        +                S  +    +      +  +Y   
Sbjct: 116 FCAVSRYGREELVGQDHRIVNSGYHGKAYIRDMWRTISRGNIWQGEFCNRRKDGTRYWVD 175

Query: 287 QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYAN 345
                L +N+ +  +Y+S R   +     +       + +D       +    G + YAN
Sbjct: 176 STIVPLMDNAGKPRQYISIRRDITAQKEAEAQLARLKQAMDANSEMILLTDRAGRIIYAN 235

Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405
           P+    +     + +  +  +        L+D   +  +          +          
Sbjct: 236 PALCRFSGMAEGELLGQSPSI----LDSPLADQETLAAMQEALQAGQPWSGRLLNRRRTG 291

Query: 406 ---NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM----QLC--- 455
              +                     +    I+ +       +R + +E      +L    
Sbjct: 292 PAPHDAEDYWAEISTTPIHTDGNGLVGYVQIQHDVSARVERERALAMEQEDTAARLRITE 351

Query: 456 SILEATSD-----------------------GIAIINREGIIL--------STNRAVSK- 483
           ++ ++                          GI +    G  L          +  V + 
Sbjct: 352 TLQQSAPLDERCRQVLRILFELGTFGLQRKGGIFLKAEHGNCLKLFVLEGKFCDEFVRRE 411

Query: 484 --------LFGYPV-------EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528
                   L G           D   +               HY+  I S      L  +
Sbjct: 412 QTIPMGACLCGRSAVSGEILVSDDCFQDHRHEHRFEDMESHGHYIVPIASGGD--LLGVL 469

Query: 529 TLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
            L +         R+++ +          + D     + K  L  A   A   +  KS F
Sbjct: 470 FLYTDPNPTRSEARMVMLRQVGEMLALAILED-----RAKASLKAAHDAAVDAAQAKSAF 524

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
           LA +SHEIRTP+  ++G  E++K+            +       S   +L+I+N +LD S
Sbjct: 525 LANMSHEIRTPMNGVLGMLELLKDTDMSR----EQWDLVETASNSAESLLEIINSILDFS 580

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQI 707
           K+E+GK+ +     +L + V E  +L+   A++K + +      ++PR+   D   ++QI
Sbjct: 581 KLEAGKVEIERTEFNLPDLVEEVCALLAGRAHDKGLELNCFLPADLPRMWIGDPTRIRQI 640

Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQI 763
             N+L N++ FT  G ++ +            ++   +RDTG+G+      +  +PF Q 
Sbjct: 641 LTNLLGNSVKFTERG-EVSVKVMQGEAGAKRTDLSFEIRDTGIGIAPDVQARLFQPFTQA 699

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
             S   R  GTGLGL + + +V+   G   + S P +G+      PL  
Sbjct: 700 DGSTSRRFGGTGLGLSICRNLVELMGGTIGLESAPGRGSRFWFTLPLEP 748



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/243 (9%), Positives = 59/243 (24%), Gaps = 11/243 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGKT 147
            D  G +   ++           +++G     V+   H       +   + R N W G+ 
Sbjct: 103 TDLQGRILYANDNFCAVSRYGREELVGQDHRIVNSGYHGKAYIRDMWRTISRGNIWQGEF 162

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH- 206
                +GT     +D   +P+     +   +    I        +  A   RL +     
Sbjct: 163 CNRRKDGT--RYWVDSTIVPLMDNAGKPRQY--ISIRRDITAQKEAEAQLARLKQAMDAN 218

Query: 207 -----LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
                L +                         +  + + S          + +  +   
Sbjct: 219 SEMILLTDRAGRIIYANPALCRFSGMAEGELLGQSPSILDSPLADQETLAAMQEALQAGQ 278

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
             S       +      +   Y  +     +  +      Y+  ++  S     +    +
Sbjct: 279 PWSGRLLNRRRTGPAPHDAEDYWAEISTTPIHTDGNGLVGYVQIQHDVSARVERERALAM 338

Query: 322 TPE 324
             E
Sbjct: 339 EQE 341



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 16/140 (11%), Positives = 38/140 (27%), Gaps = 7/140 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL-HIDPNNHIGDLLKRQNTWYGKT 147
            D  G +   +  L +  G    +++G     +   L   +    + + L+    W G+ 
Sbjct: 225 TDRAGRIIYANPALCRFSGMAEGELLGQSPSILDSPLADQETLAAMQEALQAGQPWSGRL 284

Query: 148 TLWPIEG----TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                 G           +++  PI++      G+    I H      +         + 
Sbjct: 285 LNRRRTGPAPHDAEDYWAEISTTPIHTDGNGLVGY--VQIQHDVSARVERERALAMEQED 342

Query: 204 FSHLHEIKKGHSSVEKEKYD 223
            +    I +           
Sbjct: 343 TAARLRITETLQQSAPLDER 362


>gi|283850533|ref|ZP_06367821.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283574104|gb|EFC22076.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 712

 Score =  325 bits (833), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 99/508 (19%), Positives = 188/508 (37%), Gaps = 37/508 (7%)

Query: 313 AYFDEGENLTPETVDKC-PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
                        +    P+    +    + Y  P           D +   G   +++ 
Sbjct: 66  LAVLPERRRDRALLAAMDPLAALSHQMEKVTYIGP---DSPPALRGDLLPALGVGDSVVV 122

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
             +          +L   D   I+    + +        LA+                  
Sbjct: 123 PLQHGGARIGVLFLLGIMDTHGIS---SIISTLDRLAPILALILRNAHLYRNLER----- 174

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVE 490
                  +      ++     +  ++  + SD + + +R  GI++  N A  + FG   E
Sbjct: 175 -------EVASRTEELRASEERYRALFSSVSDPVLVADRNTGILVECNEAAERFFGRARE 227

Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE--KLLSLRIIIKKL 548
           +++ +P    L        N       S       +   L        ++  +      +
Sbjct: 228 ELVGRP-QRELHPMESPGSNGLAENFRSSATPSGPQTDVLLRAAGGNIRIAEVMTNAFDM 286

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                      D++E KQ +  L  AK+ AE  +  KS+FLA +SHEIRTPL  I+G  +
Sbjct: 287 QGQELMLGVFRDVTERKQAEEALQAAKEQAEAATRVKSEFLANMSHEIRTPLNGILGILQ 346

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
           ++ + R     +    EY     +S + +  +++D+LD+S+IE+GK+ L  +   + +  
Sbjct: 347 LLGHTRL----DAEQREYLLAAIQSSHRLTRLLSDILDLSRIEAGKLALREDAFEIADQR 402

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIII 727
              + L  + A EK + +       +P  ++ D   ++Q+  N++ NAI FT  G    +
Sbjct: 403 EATLGLFGMTAREKGLELDFRIDGRMPPRLVGDKSRLQQVLFNLVGNAIKFTEKG---RV 459

Query: 728 STTHTSNEE------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
                          V+  + DTG+G+ +  L+   +PF Q   S     +G GLGL + 
Sbjct: 460 RVEVEPIGWCKGVLRVLFVISDTGIGIDDAMLQAVFEPFTQAEVSYTRSFQGAGLGLSIV 519

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           + +V    G+  I ST   GT +    P
Sbjct: 520 RKLVGIMGGELTIDSTTGAGTTVYCSLP 547



 Score = 47.3 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 23/241 (9%), Positives = 60/241 (24%), Gaps = 13/241 (5%)

Query: 93  GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG--KTTLW 150
           G L E +E   +  G    +++G    ++   +    +N + +  +   T  G     L 
Sbjct: 209 GILVECNEAAERFFGRAREELVGRPQREL-HPMESPGSNGLAENFRSSATPSGPQTDVLL 267

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
              G N+ +   +     +    +       G+              +   ++      +
Sbjct: 268 RAAGGNIRIAEVM--TNAFDMQGQ---ELMLGVFRDVTERKQAEEALQAAKEQAEAATRV 322

Query: 211 KKGHSSVEKEKYD-----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
           K    +    +       I        H R+  +              L      +L   
Sbjct: 323 KSEFLANMSHEIRTPLNGILGILQLLGHTRLDAEQREYLLAAIQSSHRLTRLLSDILDLS 382

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
                +             ++   G     ++E    L  R    +       ++   + 
Sbjct: 383 RIEAGKLALREDAFEIADQREATLGLFGMTAREKGLELDFRIDGRMPPRLVGDKSRLQQV 442

Query: 326 V 326
           +
Sbjct: 443 L 443


>gi|240137118|ref|YP_002961587.1| putative PAS sensor signal transduction histidine kinase
           [Methylobacterium extorquens AM1]
 gi|240007084|gb|ACS38310.1| putative PAS sensor signal transduction histidine kinase
           [Methylobacterium extorquens AM1]
          Length = 786

 Score =  325 bits (833), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 118/643 (18%), Positives = 246/643 (38%), Gaps = 57/643 (8%)

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
            I+  + +    +          P   +     ++T         +   +       E +
Sbjct: 122 RIRAAYPAPAPAETFAGYLADGEPIAILGESAGAMTVNLQAGGQAVVAARRLADGMGEVA 181

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
           + ++ +    N  +                +    ++      +   DE  +L  + +D 
Sbjct: 182 VVQRFEPLADNWWRMFGHHAVSLSAIALVLAGMATAYILQTQRAQAADEVCDLVKQRLDT 241

Query: 329 C----PIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
                    + +       + + S   L  Y    D+   G ++ LL A      +  + 
Sbjct: 242 ALGRGRCGLWDWDIARGTIFWSDSMYALLGYTPEKDLLSFGDVNALLHAEDGDLYSLARH 301

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
           +    +             I+      + +        +    +    GI  +  + R  
Sbjct: 302 LAASHATVD------HEFRIRDASGEWIWLRTRAEIVEDAVDGSRHLVGIAMDVTEQRRL 355

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRKPFTVFLE 502
                   M+L   +EA S+   + +    ++  N     L      + +  + +   + 
Sbjct: 356 AEFTATADMRLRDAVEAVSEAFVLWDASNRLVLCNSKFRDLHALASEDAVPGRRYDEIMG 415

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
           +     +   +         +T E        + + L +    ++      Y     DI+
Sbjct: 416 RGALPPVRRGIPG-SERGPSRTFEVELT----DGRWLQVS---ERRTKDGGYVSVGTDIT 467

Query: 563 EWKQEKNKLSHAKKIAEK-----------------------------------ESSHKSD 587
             K+ + +L  +++   +                                    +  KS+
Sbjct: 468 SLKRHQEQLVTSERELIETVKDLKRSRRTLETQTQQLADLAERHLDQKARAEIANQAKSE 527

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           FLA +SHE+RTPL AI+GF+E+++++ +G LG+PRY +Y   I +SG  +L +++D+L +
Sbjct: 528 FLANMSHELRTPLNAIMGFAELMESEVYGSLGSPRYADYCRDIQQSGTYLLSVIDDILHM 587

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707
           S+IE+ ++ L    + L  A++ A++LV   A  K + I    A  +  +LAD R+++QI
Sbjct: 588 SRIEAKRVKLVRRDIDLGTALTSALTLVAKEAASKSVSIDLELAGTL-HVLADERALQQI 646

Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
            LNI+ NA+ FTP  G++ +    + N  V L + DTG+G+    + K  +PF Q+  + 
Sbjct: 647 LLNIIQNAVKFTPERGRVALR-GRSCNGFVHLFIGDTGIGIPKTAISKLGRPFEQVETNL 705

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
               +G+GLGL +A++  + + G   I S    GTL+ +  P+
Sbjct: 706 TRSYKGSGLGLAIARSTAELHGGSLRIRSEEGIGTLVLVRLPM 748


>gi|150390625|ref|YP_001320674.1| multi-sensor signal transduction histidine kinase [Alkaliphilus
           metalliredigens QYMF]
 gi|149950487|gb|ABR49015.1| multi-sensor signal transduction histidine kinase [Alkaliphilus
           metalliredigens QYMF]
          Length = 588

 Score =  325 bits (833), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 110/584 (18%), Positives = 225/584 (38%), Gaps = 37/584 (6%)

Query: 238 NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297
           N++       A   +    EK   L   E     +E      +      Q    L ++  
Sbjct: 34  NELERRLISNAKLIESFIMEKEVDLKPAELQRIAEEYGSKAEVRVTIIDQSGEVLADSLA 93

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLL-TKYK 355
                 +HRN P +   +++G        +   I    +         N   + L     
Sbjct: 94  AEGVIENHRNRPEVQMAYEDGLGRAIRHSETVNIDMMYIAIPVQFSEENIGIVRLAINLL 153

Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
            +  I         +         +I      R     I     +               
Sbjct: 154 EIQRINERLYYYIGISIIIGLIAASILGYRFIRKIMEPIKEMTEMSNEIAKGR------- 206

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINK--RKMEIEVMQLCSILEATSDGIAIINREGI 473
                     + M Q G    D+   +     ++     +  ++L +  + I  ++ +  
Sbjct: 207 FDKRVRVVSNDEMGQLGDHFNDMADHLKHTISQLSQSNTKFKALLTSIINPIVAVDNKSQ 266

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
           ++  N A  KLF   +E+ + K     +  N   +++  + EI   +  + +        
Sbjct: 267 VILLNPAAEKLFNTTMEEAMGKHILEVIRNN---LLDEQIKEIFEKNEAKQI--EVTLKE 321

Query: 534 KEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
            +E++L +     +L             M D+SE ++ +                +S+F+
Sbjct: 322 PKERILKVYTNPIQLEHDPTRIIGLVALMEDVSEIRKLE--------------KMRSEFV 367

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
           A VSHE++TPLT+I GF E +K+           + + + ID     +  ++ND+L +S+
Sbjct: 368 ANVSHELKTPLTSISGFIETLKSGAI--EDEETKMRFLDIIDIETERLARLINDILTLSE 425

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709
           IE+   +L  + +  +EA+ + I ++   A  K I + +    N+P ++ +    KQ+ +
Sbjct: 426 IENNHSHLAGQGIKTNEALKDVIEMMTPIAQNKSIRLGSQVELNLPILIGNQDWFKQMFI 485

Query: 710 NILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
           N++ NA+ +T  GG++ IS  +     V+  V+D GVG+   ++ +  + F ++  ++  
Sbjct: 486 NLIDNALKYTSEGGRVQIS-AYKKYNHVVFSVKDCGVGIPKKDIPRLFERFYRVDKARTR 544

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
           +  GTGLGL + K +V +  G+  + S   KGT   +I P+ +T
Sbjct: 545 KVGGTGLGLAIVKHIVLSLNGRIKVNSEVGKGTEFILIVPIDET 588


>gi|209517665|ref|ZP_03266502.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. H160]
 gi|209501840|gb|EEA01859.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. H160]
          Length = 789

 Score =  325 bits (833), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 112/564 (19%), Positives = 215/564 (38%), Gaps = 44/564 (7%)

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
           +SL          L     +Q     ++  +      +H +        +   +L     
Sbjct: 4   ASLDTDLRGAAEALAVAAHRQSDYLTRDYREAVQNLAAHADRTRKWVGAEVAVSLL---- 59

Query: 327 DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
               + + +       +       ++ +    D+        +    +++D        L
Sbjct: 60  ----LAWLIAREFLGRHVVARLRRVSHFLRHGDVGSTQAGVPVHGGDEIADMARAVEQFL 115

Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
                       R      +    L +             +    G   E  + +  +  
Sbjct: 116 EDR---------RQRRQAEDALKELNVGLEARVAQRTAELSKALAGQAAEIAERQRAEDA 166

Query: 447 MEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           +      L SI+E   D + +        +  N+A  ++ GY  E++L +          
Sbjct: 167 VRDSETFLNSIVENIPDMVFVKEAATLRYVRFNKAAEQVLGYRREELLGRSDQDLFPAEE 226

Query: 506 PSVMNHYLTEILSLDLRQTLEKI-TLGSTKEEKLLSLRIIIKKLPFSSCYS-LTMHDISE 563
                H    +L       + +           L +++I I  +     +      DI+E
Sbjct: 227 AEFFVHKDRAVLESRQMIDVPEEPVHTRHGLRLLHTMKIPIADVRGVPQFLLGISRDITE 286

Query: 564 WKQEKNKLSHAKKI------------------AEKESSHKSDFLARVSHEIRTPLTAIIG 605
            K  + +L   ++                   A+  +  KSDFLA +SHE+RTPL AI+G
Sbjct: 287 HKLAEAELRRYREHLEDMIRERTAELAVAKEHADAANQAKSDFLAHMSHELRTPLNAILG 346

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
           +++++   +     + R I     I RSG  +L ++ND+LDI+KIE+G+M L+   VSL+
Sbjct: 347 YAQIL---KLDTTLDQRQINGLTVIQRSGEHLLMLINDILDIAKIEAGRMELNLSDVSLE 403

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ 724
           + V      +++ A EK +        ++P  +  D   ++Q  LN+LSNAI FT  G  
Sbjct: 404 QLVHFIAESIRVKATEKGLAFACEMPPDLPAGVRVDEIRLRQALLNLLSNAIRFTEQGS- 462

Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
           + +S   T    +   V+DTG+G+    LE+  +PF Q+ + +     GTGLGL +++ +
Sbjct: 463 VRLSVAFTPPTRLCFEVQDTGIGIDEGRLEEIFRPFEQVSDERHR-FGGTGLGLAISRQL 521

Query: 785 VDANMGKFYIFSTPAKGTLIEIIF 808
           V    G+ ++ S    G+   I+ 
Sbjct: 522 VRLMGGEIHVESRRDIGSTFSIVL 545



 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/255 (12%), Positives = 63/255 (24%), Gaps = 13/255 (5%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150
           A       ++   + +G    +++G    D+      +   H    +             
Sbjct: 191 ATLRYVRFNKAAEQVLGYRREELLGRSDQDLFPAEEAEFFVHKDRAVLESRQMIDVPEEP 250

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGF--GIVHVNRVDNDPRALGKRLDKKFSHLH 208
                 L +   +  +PI        G   F  GI           A  +R  +    + 
Sbjct: 251 VHTRHGLRLLHTMK-IPIAD----VRGVPQFLLGISRDITEHKLAEAELRRYREHLEDMI 305

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT------EYYAHKDDVLKTEKYPLL 262
             +    +V KE  D  +Q        M +++ +              D  L   +   L
Sbjct: 306 RERTAELAVAKEHADAANQAKSDFLAHMSHELRTPLNAILGYAQILKLDTTLDQRQINGL 365

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
           T  + S           L+    +     L  +     + +            ++G    
Sbjct: 366 TVIQRSGEHLLMLINDILDIAKIEAGRMELNLSDVSLEQLVHFIAESIRVKATEKGLAFA 425

Query: 323 PETVDKCPIPFFVYS 337
            E     P    V  
Sbjct: 426 CEMPPDLPAGVRVDE 440


>gi|89093358|ref|ZP_01166307.1| sensory transduction histidine kinase [Oceanospirillum sp. MED92]
 gi|89082337|gb|EAR61560.1| sensory transduction histidine kinase [Oceanospirillum sp. MED92]
          Length = 1068

 Score =  325 bits (833), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 103/517 (19%), Positives = 208/517 (40%), Gaps = 20/517 (3%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYSHGN--------LFYANPSFLLLTKYKSVDDI 360
           P  +    +      ET+      F   S           +   NP+ L     ++   I
Sbjct: 23  PDEANVERQARKAISETIAAKGSLFITQSDMRGLETVLQVIVERNPTLLSSVVRRNGRVI 82

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
              G        P     +    V++             L            +   P   
Sbjct: 83  SEVGPHVQ-YWEPIGDSLSTNTQVVIPLWSGEQKWGQVELRFSPIIEPGIWGIMTSPVFV 141

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
              F                  +    +    ++ S L+  ++G+ ++++   ++  N++
Sbjct: 142 FLTFLSLTSFVAFFFYLGKMLKHLDPSQAVPDRVRSALDTMAEGLLVLDKNQNVVLANQS 201

Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMN-----HYLTEILSLDLRQTLEKITLGSTKE 535
            S +     E ++    +VF   +            +   + S  +            + 
Sbjct: 202 FSDMVERSAEKMIGVKASVFPWHDRKGNPLNTEKAPWTKALESGQVIMNQVVRLTLPNES 261

Query: 536 EKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
                +      LP        +++ D++  ++++ +L  +K+ AE  +  KSDFLA +S
Sbjct: 262 RLTFMVNCSPVLLPGGKVGGVMVSLDDVTLLEEKELELRRSKEEAEAANRAKSDFLANMS 321

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HEIRTP+ AI+GF+++++  +     +   +++ N I  SG  +LD++ND+LD+SK+ESG
Sbjct: 322 HEIRTPMNAILGFADILRRDKKKLQTD--QLKHINTISTSGQHLLDLINDILDLSKVESG 379

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNIL 712
           ++ +        + +   +  +++ A+EK + ++     ++P  I  D   V+QI  N++
Sbjct: 380 RLEVEALDCKPVQLIHHVLQFMKVKADEKGLELKFVADTSLPEQIETDPGRVRQILTNLI 439

Query: 713 SNAIHFTPSGG-QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
            NAI FT  GG  + +S    + +++ + V DTG+GMT  + +   + F Q  +S   R 
Sbjct: 440 GNAIKFTEQGGVTVHVSVVGDNPKQMKIAVVDTGIGMTQQQTDSVFEAFVQADSSITRRF 499

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            GTGLGL +++    A  G   + S    GT   ++ 
Sbjct: 500 GGTGLGLSISQKFAHALGGDILVTSEKGVGTTFTLVL 536


>gi|302342500|ref|YP_003807029.1| multi-sensor signal transduction histidine kinase [Desulfarculus
           baarsii DSM 2075]
 gi|301639113|gb|ADK84435.1| multi-sensor signal transduction histidine kinase [Desulfarculus
           baarsii DSM 2075]
          Length = 591

 Score =  325 bits (833), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 94/391 (24%), Positives = 173/391 (44%), Gaps = 32/391 (8%)

Query: 425 PENMPQNGIEPEDVDTRINKR--KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
              +   G   + +   +  R   +     +L ++L    +G+ +++R+G ++  NRA+ 
Sbjct: 226 GHEIGDLGRAFDRMADNMQARIDDITAARDRLEAMLRGMVEGVMVVDRDGRVMIANRALM 285

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
            L   P   I  +      E      +   + ++   +   + E  TL          L 
Sbjct: 286 TLLDLPSMPIGMQ----LSEFVRNPEVLDAIRQVRRGEGHVSTEFRTLSRAPRF----LE 337

Query: 543 IIIKKLPF---SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
             + +LP     +      HD++E K+ +                + DF+A VSHE+RTP
Sbjct: 338 AQVVRLPDSAPQAGAVAVFHDLTERKRLEEV--------------RRDFVANVSHELRTP 383

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRY-IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
           LTAI G SE +     G L N  Y   +   I R+ + +  +  DLLD++ +ESG+  L 
Sbjct: 384 LTAIRGSSETLLG---GALENQHYAKHFVEMIARNASRLERLTQDLLDLAAMESGREELV 440

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718
            E +         ++ V   A E+ + +         RI+A  R ++Q  LN+L NAI +
Sbjct: 441 KEAIDGASLADSVLATVGELAEERGVELERELPKESLRIMASRRHLEQAVLNLLDNAIKY 500

Query: 719 TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
           T SGG++ ++ T  +  +  + V+D+G G+    L +  + F +    +  +  GTGLGL
Sbjct: 501 TESGGKVTLALT-EAEGQTRISVKDSGAGIAPEHLGRIFERFYRADKDRSRQMGGTGLGL 559

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            + K +   + G+  + STP +G+   ++ P
Sbjct: 560 AIVKHIAQKHGGRVEVESTPGQGSTFTLVLP 590



 Score = 45.0 bits (105), Expect = 0.051,   Method: Composition-based stats.
 Identities = 34/299 (11%), Positives = 73/299 (24%), Gaps = 20/299 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D  G +   +  L   +   +   IGM+L +   + + +  + I  + + +     +  
Sbjct: 271 VDRDGRVMIANRALMTLLDLPSM-PIGMQLSEF--VRNPEVLDAIRQVRRGEGHVSTEFR 327

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                 T    P  L A  +   +          + H          + +      SH  
Sbjct: 328 ------TLSRAPRFLEAQVVRLPDSA-PQAGAVAVFHDLTERKRLEEVRRDFVANVSHEL 380

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
                      E             L  ++      E  A     L+     LL      
Sbjct: 381 RTPLTAIRGSSETLL-------GGALENQHYAKHFVEMIARNASRLERLTQDLLDLAAME 433

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
              +E                 T+   ++E    L                +L    ++ 
Sbjct: 434 SGREELVKEAIDGASLADSVLATVGELAEERGVELERELPKESLRIMASRRHLEQAVLNL 493

Query: 329 CPIPF-FVYSHGNLFYANPSFLLLTKYKSVD--DIEIAGGLSTLLDAPKLSDNNAIKPV 384
                 +  S G +  A       T+    D         L  + +    +D +  + +
Sbjct: 494 LDNAIKYTESGGKVTLALTEAEGQTRISVKDSGAGIAPEHLGRIFERFYRADKDRSRQM 552



 Score = 40.8 bits (94), Expect = 0.87,   Method: Composition-based stats.
 Identities = 41/347 (11%), Positives = 93/347 (26%), Gaps = 30/347 (8%)

Query: 123 DILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNR-------EF 175
               +   + + D L         T + P         + LA L     +          
Sbjct: 63  PDDGLLGGDRLADAL-GGKLGARVTLISPAGLVLGDSDVPLAGLAKLDNHGMRPEVVEAL 121

Query: 176 SGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR 235
            G  G  + + + +D D     KRL      L  ++   S +   K  +   Q       
Sbjct: 122 EGGSGVSVRYSSTLDTDLMYAAKRLGDGTRPLMVVRLALS-LSSVKKTLSQLQRLIMGAV 180

Query: 236 MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN 295
           +   + SL   Y               +     +            Q   +QY G    +
Sbjct: 181 LLGALLSLGMAYMV---------ARGFSRPLKKMTTVATAIAAGDLQRRFRQYPGHEIGD 231

Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKY 354
              +F+ ++      +        +     +        V    G +  AN + + L   
Sbjct: 232 LGRAFDRMADNMQARIDD-ITAARDRLEAMLRGMVEGVMVVDRDGRVMIANRALMTLLDL 290

Query: 355 KSV-------DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
            S+       + +     L  +    +   + + +   L R+ R      A++  +  + 
Sbjct: 291 PSMPIGMQLSEFVRNPEVLDAIRQVRRGEGHVSTEFRTLSRAPRFL---EAQVVRLPDSA 347

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
             + A+         +  E + ++ +     + R     +      L
Sbjct: 348 PQAGAVAVFHDLTERKRLEEVRRDFVANVSHELRTPLTAIRGSSETL 394


>gi|288962966|ref|YP_003453260.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
 gi|288915232|dbj|BAI76716.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
          Length = 1175

 Score =  325 bits (833), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 120/658 (18%), Positives = 231/658 (35%), Gaps = 41/658 (6%)

Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS 242
           +V  +R     R    +  +  + L +     S V          +        + ++  
Sbjct: 257 VVEGDRSVFRQRQAELQASEMLNGLVDRANQVSLVNTGLNTGIFVEQTKAAEESRQRIIE 316

Query: 243 LTEYYAHKDDVLKTEKYPLLTS---------EESSLPEQEDFHTINLNQYTKKQYFGTLQ 293
           ++  Y              +                   E           +    G  +
Sbjct: 317 VSTTYTRLFFASVGVVVLGMVLSVLYVRRKVLARLWAVSEAIRDRTGGGRAEVPVTGADE 376

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY--SHGNLFYANPSFLLL 351
                       +     SA     E      ++  P+P  +   + G + + N     L
Sbjct: 377 IGQLARALRFYIQETEDKSAALSRNEQWLRTVLEVAPVPLVISGRADGQIRFVNRRAADL 436

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411
            +  +  ++      S              + V    +    +     L  +        
Sbjct: 437 FEAAAAAELLGRPAASV-----WSVPQVRDEFVRDVFASGLALDVETEL--VTRTGRRLW 489

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471
            +      +       +       +    R  +  +      L ++++     + ++  +
Sbjct: 490 GLLSGIAFEFQGEEVLLSSVV---DITRRREAEELLRRTRAFLDAVIDNVPSVLYVLEGD 546

Query: 472 -GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530
            G ++  NRA    F     DI  +     L   T   +       +       +E++ L
Sbjct: 547 TGRVVLWNRAAEDCFATRRADIGDRTLAEVLGPETGRALAGGDPGAMR---SLGMEELVL 603

Query: 531 GSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
               E  + +L+    +             +DI+  ++ + +L  AK+ AE+  + K++F
Sbjct: 604 PRNGENAVFALQRHPFEWSGDGRCRIICVANDITASRRAREELRQAKERAERADAAKTEF 663

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
           LA VSHE+RTPL  I+G   ++   R           YA  I R G+ +LD VND+LD+ 
Sbjct: 664 LATVSHEMRTPLNGILGLCRLLLTGRLESGE----RRYAMSIMRCGHGLLDQVNDILDLR 719

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQI 707
           KIE GK+ L   P +L   + E ++ V+  ANEK I +    A  +P  ++ D + ++QI
Sbjct: 720 KIEDGKLELDPAPCALLPVLEEVVATVEGLANEKGIGLGLDIAPAVPALVVVDRQRLRQI 779

Query: 708 ALNILSNAIHFTPSGG---QIIISTTHTSNE------EVILRVRDTGVGMTNYELEKAMK 758
            +N++ NA+ FT  GG   ++ I T    +        + L VRDTG+G+         +
Sbjct: 780 LVNLVGNAVKFTERGGVDLRVDIETAPEHSGSGMIGERLRLAVRDTGIGVPADRRAAIFE 839

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
              Q  ++   R  G+GLGL + + ++DA  G   + S    G++  +  PL     P
Sbjct: 840 KLEQADSTIARRFGGSGLGLAIVRHLLDAMQGSIRVDSVEGLGSVFTVTIPLLRVEEP 897



 Score = 38.9 bits (89), Expect = 3.5,   Method: Composition-based stats.
 Identities = 40/390 (10%), Positives = 90/390 (23%), Gaps = 29/390 (7%)

Query: 79  IPRTVRFTWNIDAHGYLKEISEE-LPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL 137
               V    +  A G ++ ++           A +++G     V  +  +  +  + D+ 
Sbjct: 410 EVAPVPLVISGRADGQIRFVNRRAADLFEAAAAAELLGRPAASVWSVPQV-RDEFVRDVF 468

Query: 138 KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG 197
                   +T L    G    +   L+ +    +  E         V       +   L 
Sbjct: 469 ASGLALDVETELVTRTGR--RLWGLLSGIAFEFQGEEVL----LSSVVDITRRREAEELL 522

Query: 198 KRLDKKFSHLHEIKKGHSSV--EKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255
           +R       + +       V        +   ++       +                  
Sbjct: 523 RRTRAFLDAVIDNVPSVLYVLEGDTGRVVLWNRAAEDCFATRRADIGDRTLAEVLGPETG 582

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
                       SL  +E     N             + +       +   N  + S   
Sbjct: 583 RALAGGDPGAMRSLGMEELVLPRNGENAVFALQRHPFEWSGDGRCRIICVANDITASRRA 642

Query: 316 DEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
            E      E                   A   FL    ++    +    GL  LL   +L
Sbjct: 643 REELRQAKE------------RAERADAAKTEFLATVSHEMRTPLNGILGLCRLLLTGRL 690

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
                   + + R     +     +  ++   +  L +   P        E +       
Sbjct: 691 ESGERRYAMSIMRCGHGLLDQVNDILDLRKIEDGKLELDPAPCALLPVLEEVVATVEGLA 750

Query: 436 ED------VDTRINKRKM-EIEVMQLCSIL 458
            +      +D       +  ++  +L  IL
Sbjct: 751 NEKGIGLGLDIAPAVPALVVVDRQRLRQIL 780


>gi|220908337|ref|YP_002483648.1| multi-sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7425]
 gi|219864948|gb|ACL45287.1| multi-sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7425]
          Length = 503

 Score =  325 bits (833), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 81/403 (20%), Positives = 171/403 (42%), Gaps = 22/403 (5%)

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-RE 471
           +      +  Q         ++ E  +     + +     +      ++ + IAI    E
Sbjct: 119 VEHHLTIQRLQRQLQHQNAQLQQEIQEREQVLQALRQAEEKFVKAFRSSPNPIAITTLAE 178

Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
           G  +  N +  ++ G+ +E+++             +     +  + +  +    E     
Sbjct: 179 GRFIDVNASFLRITGFQLEEVIGHTVAELNAGLDLAAYTSAIATLQTTGVVHNHEFEFRT 238

Query: 532 STKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
            T +     L I   +L    C     +DI+E KQ +                 ++F++ 
Sbjct: 239 KTGQIGTALLSIERIELAGVPCALNIANDITERKQLE-----------------NEFISL 281

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           VSHE+RTPLT+++G  +++   + G L  P+          +   ++ ++ND+LD+ +I+
Sbjct: 282 VSHELRTPLTSLMGALDLLGTGQLGNLT-PKGQHVLRIATTNTERLIRLINDILDLERIK 340

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
           +GK+ +        E +++A   +Q  A++  + +          ++AD   + Q   N+
Sbjct: 341 AGKITMQKVRCDAAELITQAAEALQEMAHQANLQLVVE--PIAVALIADPDRILQTLTNL 398

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           LSNAI F+   G++ +       E + L+V+D G G+   +L+   + F Q+  S   + 
Sbjct: 399 LSNAIKFSEPQGRVWLRGQVE-GEILHLQVQDQGRGIPADKLQTIFERFQQVDASDSRKK 457

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
            GTGLGL + +++V+ + GK +  S   +G+   I  PL   +
Sbjct: 458 GGTGLGLSICRSIVNLHGGKIWAESVLGEGSTFHIHLPLNPEA 500



 Score = 46.2 bits (108), Expect = 0.026,   Method: Composition-based stats.
 Identities = 38/319 (11%), Positives = 86/319 (26%), Gaps = 32/319 (10%)

Query: 69  DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID 128
            +E  FV               A G   +++    +  G    ++IG  + +++  L + 
Sbjct: 155 QAEEKFVKAFRSSPNPIAITTLAEGRFIDVNASFLRITGFQLEEVIGHTVAELNAGLDLA 214

Query: 129 PNNHIGDLLKRQNTWYGKTTLWPIEGTNLYV------PIDLAALPIYSRNREFSGFRGFG 182
                   L+     +     +  +   +         I+LA +P               
Sbjct: 215 AYTSAIATLQTTGVVHNHEFEFRTKTGQIGTALLSIERIELAGVP-----------CALN 263

Query: 183 IVHVNRVDNDPR------------ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP 230
           I +                          L      L   + G+ + + +     +  + 
Sbjct: 264 IANDITERKQLENEFISLVSHELRTPLTSLMGALDLLGTGQLGNLTPKGQHVLRIATTNT 323

Query: 231 PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG 290
              +R+ N +  L    A K  + K          +++   QE  H  NL    +     
Sbjct: 324 ERLIRLINDILDLERIKAGKITMQKVRCDAAELITQAAEALQEMAHQANLQLVVEPIAVA 383

Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYAN--PSF 348
            + +      + L++    ++     +G       V+   +   V   G    A+   + 
Sbjct: 384 LIADP-DRILQTLTNLLSNAIKFSEPQGRVWLRGQVEGEILHLQVQDQGRGIPADKLQTI 442

Query: 349 LLLTKYKSVDDIEIAGGLS 367
               +     D    GG  
Sbjct: 443 FERFQQVDASDSRKKGGTG 461



 Score = 38.9 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 19/161 (11%), Positives = 46/161 (28%), Gaps = 12/161 (7%)

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY--SHGNLFYANPSFLLLTKYKSVDDIE 361
             +    +     + E    +     P P  +   + G     N SFL +T +     +E
Sbjct: 142 EIQEREQVLQALRQAEEKFVKAFRSSPNPIAITTLAEGRFIDVNASFLRITGF----QLE 197

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
              G +       L        +   ++            T     +   A+  I   + 
Sbjct: 198 EVIGHTVAELNAGLDLAAYTSAIATLQTTGVVHNHEFEFRTKT--GQIGTALLSIERIEL 255

Query: 422 NQFPENMPQNGIEPEDVDTRINKRK-MEIEVMQLCSILEAT 461
              P  +    I  +  + +  + + + +   +L + L + 
Sbjct: 256 AGVPCALN---IANDITERKQLENEFISLVSHELRTPLTSL 293


>gi|229191211|ref|ZP_04318199.1| hypothetical protein bcere0002_28760 [Bacillus cereus ATCC 10876]
 gi|228592226|gb|EEK50057.1| hypothetical protein bcere0002_28760 [Bacillus cereus ATCC 10876]
          Length = 801

 Score =  325 bits (833), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 102/532 (19%), Positives = 211/532 (39%), Gaps = 47/532 (8%)

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVD-----KCPIPFFVYSHGNLFYANPSFLLL 351
            +  E +      +     +   + T E ++                G++  AN ++  +
Sbjct: 294 GQVIEVVGSTVDITERKKVESELSATKELLESFIKHNLDAITISDREGHILQANKAYEKI 353

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ-WNRENS 410
             + S + I            P + D    + +   +   T  +   RL T++  +  + 
Sbjct: 354 FGWSSQEIIGKRL--------PCVPDFLMEESLKNIQKILTGESVVTRLETVRQRSDGSL 405

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK-------MEIEVMQLCSILEATSD 463
           L ++       +     +  + I  +  + +  +R+       +    M+  +++E  +D
Sbjct: 406 LDVSLTVSPILDVRGNVIALSAICRDISERKQAERERHRLHQQLRDSEMKYRALIEQATD 465

Query: 464 GIAI--INREG---IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
            + +  +N +      +  N    + FGY  E++L   F+  + Q++  ++   L +I  
Sbjct: 466 AVYVVELNEDNAPSRFIEVNPVGCRRFGYSREELLSLSFSNIVPQDSQMIVR-LLEKIKK 524

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578
                TL+   +  T +       + +  L     +     DI+E  + +  L  ++K+A
Sbjct: 525 GQTSFTLQDEYVFPTGKVITTEFSVRVFNLNGKKVFLSISRDITERLKTEELLRKSEKLA 584

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
                        ++HEI  PLTA+ GF +++K+       N     Y N +      + 
Sbjct: 585 VV-----GQLATVMAHEINNPLTAMKGFMQLLKSTE-----NENNQGYINIVSSEIERIE 634

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
            I  + + ++K +  K+  +     +   + + + L+Q  A    I IR      IP I 
Sbjct: 635 SITTEFMAVAKPQVVKIKPN----DISVLMDQVLMLLQPQAMMNNIKIRIDLNPGIPLIS 690

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
            +   +KQ+ +NIL NAI   P GG+I+I      N ++ +R  D G G+    +    +
Sbjct: 691 CEGNQLKQVFVNILKNAIESMPMGGEILIQLNILDNNQLSIRFIDQGCGIPKERIPYLGE 750

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           PF        I+ EG GLGL +   +++ + GK +I S   KGT +E+  P+
Sbjct: 751 PFY------SIKEEGIGLGLMICYKIIETHQGKVFIESEVNKGTTVEVTLPI 796



 Score =  108 bits (269), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 44/286 (15%), Positives = 91/286 (31%), Gaps = 21/286 (7%)

Query: 313 AYFDEGENLTPETVDKCPIPFF----VYSHGNLFYANPSFLLLTKYKSVDDIEI-AGGLS 367
               + +    +TV +     F    V  H      +  F     + S   +      + 
Sbjct: 186 RELKKSKQELADTVHELQGGIFKFKKVGKHFIHTLCDGQFYYQNGFYSEQVVGKSLRTID 245

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
             +  P L          L   +   I        + W  + ++ +         +  + 
Sbjct: 246 ASIVPPHLVPQLMKY--YLQAWEGKEIIFE-----LPWPNDKTIILI--ALRPIKRNGQV 296

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
           +   G   +  + +  + ++      L S ++   D I I +REG IL  N+A  K+FG+
Sbjct: 297 IEVVGSTVDITERKKVESELSATKELLESFIKHNLDAITISDREGHILQANKAYEKIFGW 356

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
             ++I+ K     +           + +IL           T+    +  LL + + +  
Sbjct: 357 SSQEIIGKRL-PCVPDFLMEESLKNIQKIL-TGESVVTRLETVRQRSDGSLLDVSLTVSP 414

Query: 548 LPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
           +               DISE KQ + +     +   ++S  K   L
Sbjct: 415 ILDVRGNVIALSAICRDISERKQAERERHRLHQQL-RDSEMKYRAL 459



 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/286 (13%), Positives = 84/286 (29%), Gaps = 23/286 (8%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG-KTT 148
           D  G++ + ++   K  G  + ++IG RL  V D L  +   +I  +L  ++     +T 
Sbjct: 338 DREGHILQANKAYEKIFGWSSQEIIGKRLPCVPDFLMEESLKNIQKILTGESVVTRLETV 397

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +G+ L V + ++  PI              I               RL ++     
Sbjct: 398 RQRSDGSLLDVSLTVS--PILDVRGNVIALS--AICRDISERKQAERERHRLHQQLRDSE 453

Query: 209 EIKKGHSSVEKEKYDIFSQQS-----------PPPHLR---MKNKVSSLTEY-YAHKDDV 253
              +       +   +                P    R    + ++ SL+      +D  
Sbjct: 454 MKYRALIEQATDAVYVVELNEDNAPSRFIEVNPVGCRRFGYSREELLSLSFSNIVPQDSQ 513

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
           +       +   ++S   Q+++        T +               +LS     +   
Sbjct: 514 MIVRLLEKIKKGQTSFTLQDEYVFPTGKVITTEFSVRVFN--LNGKKVFLSISRDITERL 571

Query: 314 YFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVD 358
             +E    + +      +     +   N   A   F+ L K    +
Sbjct: 572 KTEELLRKSEKLAVVGQLATVMAHEINNPLTAMKGFMQLLKSTENE 617


>gi|37519624|ref|NP_923001.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
           7421]
 gi|35210615|dbj|BAC87996.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
           7421]
          Length = 644

 Score =  325 bits (833), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 89/367 (24%), Positives = 179/367 (48%), Gaps = 27/367 (7%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            ++  E  +L + +   +DG  +++    IL  N A+ ++FG+    ++ K     L   
Sbjct: 280 EEITAEKAKLETFIATIADGGILLDSSLRILLVNPAMLRIFGW-GSRVVGKNILDLLPVG 338

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHD 560
             + +   L  +    L Q   ++ L    +++ L + I     P          LT+ D
Sbjct: 339 MRAEVEEPLDSVSRNILEQAECRVVL----DKRTLRVLISPVLAPRGDNLLKGVVLTVQD 394

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           +S  K+ +             +  KS F++ VSHE+RTPL++I  + E +  +    L +
Sbjct: 395 LS--KEAE------------LNQAKSQFISNVSHELRTPLSSIKSYIETVY-EFGDSLDD 439

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
               E+    ++  + +  +VND+LD+S++ESG+   HFEPV L + + + +   +L A 
Sbjct: 440 STKNEFLKTANQETDRLTRLVNDVLDLSRLESGR-EYHFEPVDLVQPIEQTLRTHRLTAR 498

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN-EEVIL 739
           ++ I + +  A ++P +L +   ++Q+  N++ NA+ FT  GG++ +S   T +  +V +
Sbjct: 499 DREIELVSDIATDLPLVLGNYDLLQQVFSNLVGNALKFTEPGGRVTLSARRTDDPAKVRV 558

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V DTG+G++  +  +  + F ++ N +    EGTGLGL +   +V  +  + +I S   
Sbjct: 559 AVTDTGIGISEEDQRRIFERFFRVEN-RVHTLEGTGLGLSIVDNIVKKHNAQVHIESEVG 617

Query: 800 KGTLIEI 806
           +G+    
Sbjct: 618 QGSTFWF 624


>gi|218782250|ref|YP_002433568.1| multi-sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218763634|gb|ACL06100.1| multi-sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 1071

 Score =  325 bits (833), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 110/757 (14%), Positives = 236/757 (31%), Gaps = 63/757 (8%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK 146
           W  D  G L E+++   +  G    ++  M++ D+             + L    +   +
Sbjct: 205 WVTDIEGRLLEVNDAYCQMSGYTKNELTAMKISDLEAQEDASKVTRHIEKLASMGSDRFE 264

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
           +     +G  + + + +   P         G R    +          A     ++K+ +
Sbjct: 265 SRHRKKDGGIMDIEVSVQFRPEQ-------GGRVVCFLRDISERKKTEAALVESEQKWRN 317

Query: 207 LHEIKKGHSSVEKEKYDIFSQQS-------PPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
           +             +  I               H  +      L      +D + K    
Sbjct: 318 ILTNTPQIGVTLNPEAKIVFVNDHLLKLTGWNEHEVIGKDWFDLFIPENVRDVIRKVFFS 377

Query: 260 PLLTSEESSLPEQE----DFHTINLNQYTKKQYFGTLQNNSKESFEY-LSHRNHPSLSAY 314
            +   +       E    D     LN              S +     +           
Sbjct: 378 AMNQKDAFGYSTYENEILDRRGNTLNVAWSNVLTKDADGKSIDITCLGVDLTERIRAEKA 437

Query: 315 FDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
             +            P    V ++      N +   +  Y   + I        L+   +
Sbjct: 438 LSDSAAYMQSIFRAAPSGIGVVTNRVFSKVNDTLCRMVGYSREELIGQGP---ALIYPSQ 494

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
              +   +        R   +   R    +      + +        +     +      
Sbjct: 495 EECDRVGRVKFEQIQKRGTGSVETRF---RRKDGGIVDVLLSATPI-DPSDHGVGLTFTA 550

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDIL 493
            +  + +  +R +++    L +IL++    I++ + +   IL  N+ + + FG    D+ 
Sbjct: 551 LDISERKKIERSVQVAHELLLTILDSIDATISVADMKTYEILFMNKYMVESFG---RDLT 607

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK--EEKLLSLRIIIKKLPFS 551
            +         +        + +L    + T      G     E+  ++    I+     
Sbjct: 608 GELCWQAFRGGSGPCSFCSNSRLLDDHGQPTGLYSWQGKNPITEKWYINHDRAIQWTDGR 667

Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
                   DI++ K  + KL  ++K+    +         ++H+    L  I+G SE++ 
Sbjct: 668 MVRLQIATDITQIKDLEEKLRQSQKMESIGN-----LAGGIAHDFNNILFPIMGLSEMLM 722

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
           +       N +  E A  I ++G    D+V  +L  S+    +      P  +   + E 
Sbjct: 723 DDL---PKNSQERESAEEIFKAGKRGSDLVKQILAFSR----QSEQKKVPTRIQSILKEV 775

Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP-SGGQIIISTT 730
           + L +       I I  +  ++   +LAD   + Q+ +NI++NA H     GG I +   
Sbjct: 776 LKLSRSTIPAY-IEINQAIQSDCGMVLADPSQMHQVGMNIITNAYHAVEDKGGTITVRLE 834

Query: 731 -------------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
                              ++L V DTG GM    ++K   P+         +G+GTGLG
Sbjct: 835 ERNLEEAEAGKYDLRPGRYLVLSVNDTGCGMPEKLVDKIFDPYFTTK----EQGKGTGLG 890

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           L +   +V  + G   + S   KG+  ++  PL + +
Sbjct: 891 LAVVYGIVKEHSGTVKVHSAVGKGSTFDVYLPLMEKA 927



 Score = 94.7 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 58/140 (41%), Gaps = 4/140 (2%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
             ++  ++       SILE T DG  + + EG +L  N A  ++ GY   ++     +  
Sbjct: 180 ARSQDSLKESGELYRSILETTMDGFWVTDIEGRLLEVNDAYCQMSGYTKNELTAMKISDL 239

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK-KLPFSSCYSLTMH 559
             Q   S +  ++ ++ S+   +     +    K+  ++ + + ++ +          + 
Sbjct: 240 EAQEDASKVTRHIEKLASMGSDR---FESRHRKKDGGIMDIEVSVQFRPEQGGRVVCFLR 296

Query: 560 DISEWKQEKNKLSHAKKIAE 579
           DISE K+ +  L  +++   
Sbjct: 297 DISERKKTEAALVESEQKWR 316


>gi|254409902|ref|ZP_05023682.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196182938|gb|EDX77922.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 1258

 Score =  325 bits (833), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 112/712 (15%), Positives = 230/712 (32%), Gaps = 102/712 (14%)

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL---RMKNKVS 241
              +            ++ +  + E                S       +        + 
Sbjct: 96  REIKERIQVADALLEAEENYRSIFEKAGWGIFQTTPDGQYLSANPALAQIYGYPSPEALI 155

Query: 242 SLTEYYAHKDDVLKTEKYPLLTSEESSLP---EQEDFHTINLNQYTKKQYFGTLQNNSKE 298
           S      H+  V ++++                +   +  + +     +    +++ +  
Sbjct: 156 SRLTNGEHQLYVDQSQRAEFKRLIHQQGSVSSFESQVYRQDGSIIWISENTRAVRDANGV 215

Query: 299 ----SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTK 353
                       +    +      E    + +D  P   F     G     N +      
Sbjct: 216 LLYYEGSVEDISDRKQAAEQLQASEQKLRQIIDLVPHFIFAKNLDGQFILVNQAIADAYG 275

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
             +V+ +        +    +L      +  ++ +     I        +     N   +
Sbjct: 276 -TTVEHLLNHKDEDFIKSPEQLRRIREEERQIIQQGQPKHIPEE----RVPDAHGNIRIV 330

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE-------------- 459
                             GI  +    +  ++++      + ++ E              
Sbjct: 331 QTTRIPFYVTGSATPAILGIAIDITQRKHIEQELRENAAIIRALYEVTTQQNSDFEQKLQ 390

Query: 460 ----------ATSDGIAI----IN-REGIILSTNRAVSKLFG--------------YPVE 490
                         GI      I+   G         +++                Y  E
Sbjct: 391 NLLTMGRRQFNLDVGILSHIENIDTENGRYEII---AAQMPNNLSFKGVTLDLKQTYCAE 447

Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
            I  K     L  +T    NH   ++  ++    +  I  G      L  + +  ++ PF
Sbjct: 448 IIHAKKPLCILSASTSQWHNHPGFKVFQVEAYIGVPVIVNGQL-YGTLCFVSLTPRQTPF 506

Query: 551 SSCYSLTMHDIS-------EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
                  +  ++       E +Q   +L+ A+ +A   +  KS+FLA +SHEIRTP+  +
Sbjct: 507 KDIEIELLRLMAQWIGGEIERQQAAQELAQARDVALAATRAKSEFLATMSHEIRTPMNGV 566

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           IG + ++ + +       +  E+   I  SG+ +L I+ND+LD SKIESGK+ L      
Sbjct: 567 IGMTGLLLDTQLTS----QQQEFVTTIRHSGDTLLTIINDILDFSKIESGKLELEEVSFD 622

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSG 722
           L   +   + L+   A++K + +        P  I+ D+  ++QI +N+LSNA+ FT SG
Sbjct: 623 LQVCIENCLDLLAAKASDKNLELAYQITPQTPRMIIGDVTRLRQILVNLLSNAVKFTQSG 682

Query: 723 GQIIISTTHTSNEE--------------------------VILRVRDTGVGMTNYELEKA 756
            ++I+S      +                           +   V+DTG+G+    L + 
Sbjct: 683 -EVIVSVNAEKLDYEQWERPETKTSLTPRITPSVATPHYRIQFAVKDTGIGIPPERLNRL 741

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            +PF Q+ +S   +  GTGLGL + K + +   G  ++ S    G+      
Sbjct: 742 FQPFSQVDSSTTRKYGGTGLGLAICKQLCEMMGGTMWVESQEDIGSTFYFTL 793



 Score =  116 bits (290), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 42/373 (11%), Positives = 104/373 (27%), Gaps = 29/373 (7%)

Query: 237 KNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS 296
              VS  T                    + ++   + +       +   +     L+   
Sbjct: 21  TALVSCYTAMVLIPLTPQALALPSPAQLQAANQALEMEIRDRKQAEAAVRTLNSQLEQRV 80

Query: 297 KESFEYLSHRN---------HPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANP 346
            E  + L+  N            ++    E E       +K     F     G    ANP
Sbjct: 81  NERTKELTQVNQKLEREIKERIQVADALLEAEENYRSIFEKAGWGIFQTTPDGQYLSANP 140

Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
           +   +  Y S + +              +  +   +   L     +  +       +   
Sbjct: 141 ALAQIYGYPSPEALISRLTNGE--HQLYVDQSQRAEFKRLIHQQGSVSSFE---SQVYRQ 195

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
             + + ++       +     +   G   +  D +    +++    +L  I++     I 
Sbjct: 196 DGSIIWISENTRAVRDANGVLLYYEGSVEDISDRKQAAEQLQASEQKLRQIIDLVPHFIF 255

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL-EQNTPSVMNHYLTEILSLDLRQTL 525
             N +G  +  N+A++  +G  VE +L      F+        +     +I+     + +
Sbjct: 256 AKNLDGQFILVNQAIADAYGTTVEHLLNHKDEDFIKSPEQLRRIREEERQIIQQGQPKHI 315

Query: 526 EKITL------GSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA----K 575
            +  +          +   +   +     P          DI++ K  + +L       +
Sbjct: 316 PEERVPDAHGNIRIVQTTRIPFYVTGSATPA---ILGIAIDITQRKHIEQELRENAAIIR 372

Query: 576 KIAEKESSHKSDF 588
            + E  +   SDF
Sbjct: 373 ALYEVTTQQNSDF 385



 Score = 75.4 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 56/161 (34%), Gaps = 4/161 (2%)

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
           +E E  +       +        SI E    GI     +G  LS N A+++++GYP  + 
Sbjct: 94  LEREIKERIQVADALLEAEENYRSIFEKAGWGIFQTTPDGQYLSANPALAQIYGYPSPEA 153

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
           L    T    Q           + L           +    ++  ++ +    + +  ++
Sbjct: 154 LISRLTNGEHQLYVDQSQRAEFKRLIHQQGSVSSFESQVYRQDGSIIWISENTRAVRDAN 213

Query: 553 CYS----LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
                   ++ DIS+ KQ   +L  +++   +       F+
Sbjct: 214 GVLLYYEGSVEDISDRKQAAEQLQASEQKLRQIIDLVPHFI 254



 Score = 70.8 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 21/253 (8%), Positives = 68/253 (26%), Gaps = 13/253 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID--PNNHIGDLLKRQNTW 143
            +     G     +  L +  G  + + +  RL +    L++D         L+ +Q + 
Sbjct: 126 IFQTTPDGQYLSANPALAQIYGYPSPEALISRLTNGEHQLYVDQSQRAEFKRLIHQQGSV 185

Query: 144 YG-KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
              ++ ++  +G+   + I      +   N     + G   V             +  ++
Sbjct: 186 SSFESQVYRQDGSI--IWISENTRAVRDANGVLLYYEG--SVEDISDRKQAAEQLQASEQ 241

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSP---PPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
           K   + ++       +                    +++ ++   E +    + L+  + 
Sbjct: 242 KLRQIIDLVPHFIFAKNLDGQFILVNQAIADAYGTTVEHLLNHKDEDFIKSPEQLRRIRE 301

Query: 260 PLLTSEESSLP---EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
                 +   P    +E     + N    +            +   L      +   + +
Sbjct: 302 EERQIIQQGQPKHIPEERVPDAHGNIRIVQTTRIPFYVTGSATPAILGIAIDITQRKHIE 361

Query: 317 EGENLTPETVDKC 329
           +        +   
Sbjct: 362 QELRENAAIIRAL 374


>gi|294848713|ref|ZP_06789459.1| two-component system [Staphylococcus aureus A9754]
 gi|294824739|gb|EFG41162.1| two-component system [Staphylococcus aureus A9754]
          Length = 554

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 86/398 (21%), Positives = 168/398 (42%), Gaps = 33/398 (8%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEI--EVMQLCSILEATSDGIAIINREGIIL 475
              +           +   D+  R+ K   E   +  +L + +E     I +I+R G I+
Sbjct: 178 IRVSESNVVETKALFVSTNDLARRLQKLNNEQKIQSNRLKTTIENIPSAILMIDRNGKIV 237

Query: 476 STNRAVSKLFGYPVEDILRKPFTVF-LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
             N+A  + F                      + +   + E   ++     +     +  
Sbjct: 238 VANKAYYEQFNIS------HNIEQVGYHGYVNTEIEQLILESFKVEKPIYEQLEVAINQV 291

Query: 535 EEKLLSLRIIIKKLPFS---SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
             K   +  +              + MHDI+  KQ +              + + +F+A 
Sbjct: 292 HAKYFDISCVPILTRSQKSLQGILVVMHDITNLKQLE--------------NLRREFVAN 337

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKI 650
           VSHE++TP+T+I GF+E + +   G   +   ++ + N I +  N +  +V DLLD+S I
Sbjct: 338 VSHELKTPITSIKGFAETLID---GAKNDAESLDMFLNIILKESNRIESLVTDLLDLSHI 394

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710
           E     L  + ++L +     I  +   AN+K I I T    ++  + A    + Q+  N
Sbjct: 395 E-QHTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTDIEKDVI-VKAQESKIAQVITN 452

Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           +L+NAI+++   G I +   +  +  VI  V+D G+G+   + ++  + F ++  ++   
Sbjct: 453 LLTNAINYSYEDGDINVRV-YRDDFRVIFEVQDFGIGIKLEDQQRIFERFYRVDKARSRD 511

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
             GTGLGL + K +V+A+ G   + S   KG+  ++I 
Sbjct: 512 SGGTGLGLSITKHIVEAHQGNIEVNSQVGKGSTFKVIL 549


>gi|75761473|ref|ZP_00741438.1| Two-component sensor kinase yycG [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|218900606|ref|YP_002449017.1| sensory box histidine kinase YycG [Bacillus cereus G9842]
 gi|228968615|ref|ZP_04129600.1| hypothetical protein bthur0004_53870 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|74491034|gb|EAO54285.1| Two-component sensor kinase yycG [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|218544459|gb|ACK96853.1| sensory box histidine kinase YycG [Bacillus cereus G9842]
 gi|228791107|gb|EEM38724.1| hypothetical protein bthur0004_53870 [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 613

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 83/372 (22%), Positives = 161/372 (43%), Gaps = 25/372 (6%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +  +   E E  +L S+L   +DG+   +R+G I+  N    K+     E  L +     
Sbjct: 258 QQARSSTESERRKLSSVLSHMTDGVIATDRKGDIILLNDPAEKMLNVSRETALDQSVLEV 317

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
           L       ++H   E  S+ L  +                  +I K+   ++     ++D
Sbjct: 318 LGIQEEFTLDHLYEEPDSVLLDFSTRNEPYILRAS-----FSVIQKETGKANGLIAVLYD 372

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           ++E ++ + +              + +F+A VSHE+RTPLT +  + E + +  +     
Sbjct: 373 VTEQERIEGE--------------RREFVANVSHELRTPLTTMRSYLEALTDGAWQDPNI 418

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
                +          ++ +VN LL +SK++S +  L  E V   +  +  I   +  + 
Sbjct: 419 APQ--FLTVTQEETERMIRLVNALLQLSKLDSTEHRLMKEWVDFTDFFNNVIDRFE-MSK 475

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV-IL 739
           E+ +  + SF+     I  D   + Q+  NI+SNA+ ++P GG +          ++  +
Sbjct: 476 EQNVSFKRSFSKKSRFIDMDTDKITQVLYNIISNALKYSPEGGTVT--YRLRDRGDLLEI 533

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V D G+G+    ++K  + F ++  ++  +  GTGLGL +AK M++A+ G  +  S   
Sbjct: 534 SVSDQGMGIPKENVDKIFERFYRVDKARSRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEG 593

Query: 800 KGTLIEIIFPLY 811
           KGT I    P+ 
Sbjct: 594 KGTTIYFTLPMA 605


>gi|238026807|ref|YP_002911038.1| hypothetical protein bglu_1g11660 [Burkholderia glumae BGR1]
 gi|237876001|gb|ACR28334.1| Hypothetical protein bglu_1g11660 [Burkholderia glumae BGR1]
          Length = 773

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 99/504 (19%), Positives = 181/504 (35%), Gaps = 28/504 (5%)

Query: 320 NLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
                 +        V    G + Y NP+   L    +      A     L         
Sbjct: 115 QQYESVLASLTQGVIVTDSAGRITYLNPAAAALADLDARVAHGRAL-TDALHGNDGHGAG 173

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA-MTFIPFEKANQFPENMPQNGIEPED 437
                V+           ++ L  ++   + +   +  +     +          +  + 
Sbjct: 174 TRSTTVLERVLRGE--PGASDLLWLRPAGQGARIPVAAVASPLCDPDGVRSGAVLVLRDV 231

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
                           L  +++A+ D I  +  + +I S N A  ++FGY     L +  
Sbjct: 232 SADHERATA----NQMLRRLVDASPDAIIGVGADRLITSWNPAAQRMFGYAEAQALGRDA 287

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL- 556
            + +         H L   +            L   +  +     +    +       + 
Sbjct: 288 GMLVAPRWQR--RHPLAAAVRDVHDAVSGVDLLCVRENGERFRATLAASPVFDDEQVCVA 345

Query: 557 ---TMHDISEWKQEKNKLSHA-------KKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
              T+ D    ++ +    H        ++ A+  +  K + LA VSHE+RTPL  I G+
Sbjct: 346 LSLTLRDARLQRRRERDNHHRLRGARDARRQADTSNRLKDELLAIVSHELRTPLNVIYGW 405

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
            EV++N    P+      +  + IDRS   +  +V DLLD S + +GK+ L   PV L  
Sbjct: 406 VEVMRN----PVAEALQRQAIDAIDRSARSLSRMVADLLDASSLATGKLRLDPMPVDLVR 461

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726
            V++    +   A  + I + T    +   +  D   ++Q+  N+LSNA  FTP GG++ 
Sbjct: 462 VVADVTGALGTTAANEGITLETHCELDTCIVSGDAERLRQMLSNLLSNAFKFTPRGGRVT 521

Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
           ++ +   N   +L V DTG G+    L    + F +   S      G GLGL + + + +
Sbjct: 522 VALS-RENARALLSVTDTGQGVAPEFLPHVFEAFRRAEGSPASPRRGLGLGLSIVRHIAE 580

Query: 787 ANMGKFYIFS-TPAKGTLIEIIFP 809
            + G   + S     GT  E+  P
Sbjct: 581 LHGGSARVTSDGTGHGTTFEVALP 604



 Score = 65.8 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 38/377 (10%), Positives = 79/377 (20%), Gaps = 21/377 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           + A   +   +    +  G    + +G     +        +     +    +   G   
Sbjct: 258 VGADRLITSWNPAAQRMFGYAEAQALGRDAGMLVAPRWQRRHPLAAAVRDVHDAVSGVDL 317

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
              +          LAA P++   +          +   R+            +      
Sbjct: 318 -LCVRENGERFRATLAASPVFDDEQVCVALS--LTLRDARLQRRRERDNHHRLRGARDAR 374

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV------------LKT 256
                 + ++ E   I S +   P   +   V  +    A                 L  
Sbjct: 375 RQADTSNRLKDELLAIVSHELRTPLNVIYGWVEVMRNPVAEALQRQAIDAIDRSARSLSR 434

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
               LL +   +  +                  G L   +      L             
Sbjct: 435 MVADLLDASSLATGKLRLDPMPVDLVRVVADVTGALGTTAANEGITLETHCELDTCIVSG 494

Query: 317 EGENLTPETVDKCPIPF-FVYSHGNLFYANPS--FLLLTKYKSVDDIEIAGGLSTLLDAP 373
           + E L     +     F F    G +  A        L              L  + +A 
Sbjct: 495 DAERLRQMLSNLLSNAFKFTPRGGRVTVALSRENARALLSVTDTGQGVAPEFLPHVFEAF 554

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN---RENSLAMTFIPFEKANQFPENMPQ 430
           + ++ +   P        + +   A LH               TF     A   P     
Sbjct: 555 RRAEGSPASPRRGLGLGLSIVRHIAELHGGSARVTSDGTGHGTTFEVALPAGWQPAGTLT 614

Query: 431 NGIEPEDVDTRINKRKM 447
              +         +  +
Sbjct: 615 WAAQTTSAPATRERLHL 631



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/380 (8%), Positives = 85/380 (22%), Gaps = 25/380 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN----HIGDLLKRQNTWY 144
            D+ G +  ++          A    G  L D                + + + R     
Sbjct: 131 TDSAGRITYLNPAAAALADLDARVAHGRALTDALHGNDGHGAGTRSTTVLERVLRGEPGA 190

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
                    G    +P+   A P+   +   SG     ++     D++     + L +  
Sbjct: 191 SDLLWLRPAGQGARIPVAAVASPLCDPDGVRSGA--VLVLRDVSADHERATANQMLRRLV 248

Query: 205 SHLHEIKKGH------SSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
               +   G       +S       +F         R    + +      H         
Sbjct: 249 DASPDAIIGVGADRLITSWNPAAQRMFGYAEAQALGRDAGMLVAPRWQRRHPLAAAVR-D 307

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKK---------QYFGTLQNNSKESFEYLSHRNHP 309
                S    L  +E+                         TL++   +      + +  
Sbjct: 308 VHDAVSGVDLLCVRENGERFRATLAASPVFDDEQVCVALSLTLRDARLQRRRERDNHHRL 367

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEI--AGGLS 367
             +       + +    D+  +    +           ++ + +    + ++      + 
Sbjct: 368 RGARDARRQADTSNRLKDEL-LAIVSHELRTPLNVIYGWVEVMRNPVAEALQRQAIDAID 426

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
               +      + +    L             L  +  +   +L  T        +    
Sbjct: 427 RSARSLSRMVADLLDASSLATGKLRLDPMPVDLVRVVADVTGALGTTAANEGITLETHCE 486

Query: 428 MPQNGIEPEDVDTRINKRKM 447
           +    +  +    R     +
Sbjct: 487 LDTCIVSGDAERLRQMLSNL 506


>gi|156054917|ref|XP_001593383.1| hypothetical protein SS1G_06305 [Sclerotinia sclerotiorum 1980]
 gi|154704085|gb|EDO03824.1| hypothetical protein SS1G_06305 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 1464

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 109/539 (20%), Positives = 202/539 (37%), Gaps = 59/539 (10%)

Query: 327 DKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
           D  P   +  +  G   + +  +   T     + +           +P   D+ A+    
Sbjct: 441 DSMPQLIWTTTPDGMHDWFSQRWYDYTGLTMEESLGEG------WKSPFHPDDLALTKKR 494

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
                 T    +      + + E    +      +     +     G   +  +  +++ 
Sbjct: 495 WQHCLETGEPYTTEYRCRKHDGEWRWMLGRAICMRNKDTGKIEKWYGTCTDIHEAVMSRF 554

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV------------SKLFG---YPVE 490
           + +    QL S++      +  ++R   I     A               L G       
Sbjct: 555 EAKRLRQQLLSVITHAQVTLFSVDRHRKINLLEGAFIWDLESDVGSSDESLAGSGKAKGS 614

Query: 491 DILRKPFTVFLEQNTP--------SVMNHYLTEILSLDLRQTL-EKITLGSTKEEKLLSL 541
           D + K        ++               + +IL+  + + + E          K + +
Sbjct: 615 DYIGKNVYNVFSHSSNHRQSHDVIPASLQPIEDILTGKVMEDMQEHTIDNRWYRTKFVPV 674

Query: 542 RIIIKKLPFS-----SCYSLTMHDISEWKQEKNKLSHAKKI----------AEKESSHKS 586
                                  DI+E K  +N L   ++           A++ S  KS
Sbjct: 675 LGKKDGGGHVNEAFIDGVIGLSMDITEIKDRENDLQMQERENTRLLANEAAAKEASRLKS 734

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
            FLA +SHEIRTP+  +IG +E++ +       +    E A  I RS N +L ++ND+LD
Sbjct: 735 QFLANMSHEIRTPIAGVIGMAELLTDMNL----DEEQQECAENIQRSANALLTVINDILD 790

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR---ILADLRS 703
            SK+ESG++++     SL   V +   ++   A  K ++  +     + +   ++ D   
Sbjct: 791 FSKVESGRLDIEEVQFSLSVVVRDVSKMLGFAAERKNLMFDSDITVGVDKDLIVMGDPGR 850

Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDTGVGMTNYELEKAMKP 759
           V+QI  N+L+N+I FT  G ++  S      +    EV   V DTG+G+     ++  KP
Sbjct: 851 VRQIITNLLTNSIKFTSEG-RVKFSVIKEREDADTIEVKFVVEDTGIGIEEEVRKRLFKP 909

Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
           F Q  +S   R  GTGLGL ++K +VD   G+  + S+  +GT      P ++    HD
Sbjct: 910 FSQADSSTARRFGGTGLGLTISKNLVDLMHGRITLESSLGQGTTATFWIP-FNKPQYHD 967



 Score = 47.7 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/166 (10%), Positives = 46/166 (27%), Gaps = 7/166 (4%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID-PNNHIGDLLKRQNTW 143
             W     G     S+      G    + +G           +          L+    +
Sbjct: 446 LIWTTTPDGMHDWFSQRWYDYTGLTMEESLGEGWKSPFHPDDLALTKKRWQHCLETGEPY 505

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRN-REFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
             +      +G   +  +   A+ + +++  +    + +G           R   KRL +
Sbjct: 506 TTEYRCRKHDGE--WRWMLGRAICMRNKDTGKIE--KWYGTCTDIHEAVMSRFEAKRLRQ 561

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA 248
           +   +       +    +++   +         +++ V S  E  A
Sbjct: 562 QLLSVITH-AQVTLFSVDRHRKINLLEGAFIWDLESDVGSSDESLA 606


>gi|75911003|ref|YP_325299.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
 gi|75704728|gb|ABA24404.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
          Length = 1287

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 124/814 (15%), Positives = 258/814 (31%), Gaps = 106/814 (13%)

Query: 90   DAHGYLKEISEELPKTIGNYAFKMI-GM-RLCDVSDI--LHIDPNN-HIGDLLKRQNTWY 144
            D +G +++ +E     +G     ++ G     +++     ++D           +     
Sbjct: 330  DIYGGIQQANEAFLMMVGYSQEDLLTGRLNWKNLTPPEYFYLDEQGIAEAQANPKGACTT 389

Query: 145  GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA--------L 196
             +      +G+   +P+ +  + +    RE         +         +         L
Sbjct: 390  YEKEYIRQDGS--RIPVLIGYV-LLGEERE----ESVAFILDLSERQQAQQKILQLNKDL 442

Query: 197  GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP-----------HLRMKNKVSSLTE 245
             +R+ +  + L  I  G    E  +                       L         T 
Sbjct: 443  QRRVVELQTLLDMIPIGIGIAEDAECQNIKINPAFAKQLQLSTDVNASLSAPPNQRPTTF 502

Query: 246  YYAHKDDVLKTEKYPL---LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN----SKE 298
               H+   L   + P+          L  + D    N       +Y   L +        
Sbjct: 503  KIFHEGRELLPAELPMQYSAVHGVEVLDYEVDVVHENGEIIKLLEYVAPLFDEDGKTRGC 562

Query: 299  SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF--VYSHGNLFYANPSFLLLTKYKS 356
               ++               +    + ++  P P          + +AN +   L   K 
Sbjct: 563  IGAFVDITQRKQAEELLRNEQKWLEDVLNLMPRPLLFIEPETARVTFANRAADELAGGKF 622

Query: 357  VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
               +      +         +    + +   R  R        L     +    L++   
Sbjct: 623  PRGVPAEEYHTVYHFTDINGNPIPNEQMPGVRVARGERLEGLELDWHTND--EVLSLLIF 680

Query: 417  PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD------GIAIINR 470
                            +  +    +  ++ + +   +L  +    +D       +A+I+ 
Sbjct: 681  ADTLPAMHGYPATCVVVFQDVTQIKQAEKALSLGYQRLKLLFSTANDLLSSQEPVALIDS 740

Query: 471  E--------------GIILSTNRAVSKL------------------FGYPVEDILRKPFT 498
                             ++  N    +L                  FG  +     +   
Sbjct: 741  CFQKLAQQIGLDVYLNYLVEDNSQSIRLASYHGICPELAQKIKFLKFGEAICGTTAQERH 800

Query: 499  VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL--RIIIKKLPFSSCYSL 556
                +N     +     I S+ +        +   +    LS   R              
Sbjct: 801  SIALENVQQSTDPKTQLIRSMGIHAYYSYPLIAQGRLLGTLSFGSRSRTSFTENQKGMMQ 860

Query: 557  TMHD----ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
             + D      E  +  N L    +   + +  K +FLA +SHE+R+PL AI+G++++++ 
Sbjct: 861  AVCDQIAIAMERMELINSLQRQTEQLTEANRMKDEFLAILSHELRSPLNAILGWAQLLQA 920

Query: 613  QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
            +R   L   +  +    I+R+      ++ DLLDIS++  GK+ L+    +L   +   I
Sbjct: 921  RR---LSEAQTAKGLETIERNAKAQTQLIEDLLDISRMIRGKLRLNVRTCNLIPIIETTI 977

Query: 673  SLVQLYANEKRILIRTSFA----NNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIII 727
              + L A  K I +          N+P ++  D   ++Q+  N+L+NAI FTPSGG++ +
Sbjct: 978  ENINLAAQAKEIDLTFFLENPATENLPFQVSGDPERLQQVIWNLLTNAIKFTPSGGKVEV 1037

Query: 728  STTHTS---------NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
              T            N    ++V DTG+G+ +  L      F Q  +S      G GLGL
Sbjct: 1038 RLTKNPGCEQNELITNSYAQIQVIDTGIGINSSFLPYVFDRFRQADSSITRSHGGLGLGL 1097

Query: 779  PLAKAMVDANMGKFYIFSTPA--KGTLIEIIFPL 810
             + + +V+ + G  ++ S P   +G+   +  PL
Sbjct: 1098 AIVRHLVELHGGTVHVHS-PGEEQGSTFTVKLPL 1130



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/303 (12%), Positives = 87/303 (28%), Gaps = 27/303 (8%)

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKS 356
                L  +            E      V+   I   F   +G +  AN +FL++  Y  
Sbjct: 291 AVVIELLSQQRDRAQESLKAYEEKLKSLVNANIIGIAFADIYGGIQQANEAFLMMVGYSQ 350

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
            D +        L        +              C         I+ +      +   
Sbjct: 351 EDLLTGRLNWKNLTPPEYFYLDEQGIAEAQANPKGACTTYEKEY--IRQDGSRIPVLIGY 408

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRK-------MEIEVMQLCSILEATSDGI-AII 468
                 +            +  + +  ++K       ++  V++L ++L+    GI    
Sbjct: 409 VLLGEEREESVAFIL----DLSERQQAQQKILQLNKDLQRRVVELQTLLDMIPIGIGIAE 464

Query: 469 NREGIILSTNRAVSKLFGYPVE-------DILRKPFTVFLEQNTPSVMNHYLT-EILSLD 520
           + E   +  N A +K      +          ++P T  +      ++   L  +  ++ 
Sbjct: 465 DAECQNIKINPAFAKQLQLSTDVNASLSAPPNQRPTTFKIFHEGRELLPAELPMQYSAVH 524

Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNKLSHAKK 576
             + L+       +  +++ L   +  L               DI++ KQ +  L + +K
Sbjct: 525 GVEVLDYEVDVVHENGEIIKLLEYVAPLFDEDGKTRGCIGAFVDITQRKQAEELLRNEQK 584

Query: 577 IAE 579
             E
Sbjct: 585 WLE 587



 Score = 86.2 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 59/484 (12%), Positives = 131/484 (27%), Gaps = 48/484 (9%)

Query: 190 DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT----- 244
            +  +   K  ++K   L        +       I         +   ++   LT     
Sbjct: 301 RDRAQESLKAYEEKLKSLVNANIIGIAFADIYGGIQQANEAFLMMVGYSQEDLLTGRLNW 360

Query: 245 -----EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
                  Y + D+    E       + +    ++++   + ++      +  L    +ES
Sbjct: 361 KNLTPPEYFYLDEQGIAEAQA--NPKGACTTYEKEYIRQDGSRIPVLIGYVLLGEEREES 418

Query: 300 FEYLSHRNHPSLSAY--------FDEGENLTPETVDKCPIPFFVYSHGNLFYA--NPSFL 349
             ++   +    +                     +D  PI   +           NP+F 
Sbjct: 419 VAFILDLSERQQAQQKILQLNKDLQRRVVELQTLLDMIPIGIGIAEDAECQNIKINPAFA 478

Query: 350 LLTKYKS---VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
              +  +              T               + +  S    +        +   
Sbjct: 479 KQLQLSTDVNASLSAPPNQRPTTFKIFHEGRELLPAELPMQYSAVHGVEVLDYEVDVVHE 538

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
               + +        ++  +     G   +    +  +  +  E   L  +L      + 
Sbjct: 539 NGEIIKLLEYVAPLFDEDGKTRGCIGAFVDITQRKQAEELLRNEQKWLEDVLNLMPRPLL 598

Query: 467 IINRE-GIILSTNRAVSKLFG------YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL 519
            I  E   +   NRA  +L G       P E+        F + N   + N  +  +   
Sbjct: 599 FIEPETARVTFANRAADELAGGKFPRGVPAEEY--HTVYHFTDINGNPIPNEQMPGVRVA 656

Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHAK 575
              +         T +E +LSL I    LP    Y     +   D+++ KQ +  LS   
Sbjct: 657 RGERLEGLELDWHTNDE-VLSLLIFADTLPAMHGYPATCVVVFQDVTQIKQAEKALSLGY 715

Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
           +  +   S  +D L+      + P+  I    + +  Q    +G   Y+ Y    +    
Sbjct: 716 QRLKLLFSTANDLLSS-----QEPVALIDSCFQKLAQQ----IGLDVYLNYLVEDNSQSI 766

Query: 636 LVLD 639
            +  
Sbjct: 767 RLAS 770



 Score = 70.8 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 28/186 (15%), Positives = 58/186 (31%), Gaps = 3/186 (1%)

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469
           ++++  +                IE         +  ++    +L S++ A   GIA  +
Sbjct: 271 AVSVFAVILIVIFVIIIWQNAVVIELLSQQRDRAQESLKAYEEKLKSLVNANIIGIAFAD 330

Query: 470 REGIILSTNRAVSKLFGYPVEDIL--RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
             G I   N A   + GY  ED+L  R  +          +    + E  +         
Sbjct: 331 IYGGIQQANEAFLMMVGYSQEDLLTGRLNWKNLTPPEYFYLDEQGIAEAQANPKGACTTY 390

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCY-SLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
                 ++   + + I    L          + D+SE +Q + K+    K  ++      
Sbjct: 391 EKEYIRQDGSRIPVLIGYVLLGEEREESVAFILDLSERQQAQQKILQLNKDLQRRVVELQ 450

Query: 587 DFLARV 592
             L  +
Sbjct: 451 TLLDMI 456


>gi|157692028|ref|YP_001486490.1| sporulation sensor histidine kinase E [Bacillus pumilus SAFR-032]
 gi|157680786|gb|ABV61930.1| sporulation sensor histidine kinase E [Bacillus pumilus SAFR-032]
          Length = 731

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 98/732 (13%), Positives = 238/732 (32%), Gaps = 51/732 (6%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144
           F +  D H  + + +E   + +      ++   + D    +  D      DL  R+ T  
Sbjct: 40  FIF--DKHLNIIQANEATCRLVQTSKEDLLNKSVLDFLYGIPKDKIECSLDLFFRKGTLR 97

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            + ++    G   Y+              +    +   ++                ++ F
Sbjct: 98  REISIQLENGETKYIEFV--------AEHDVLNQQYIVVMRDISSKKILERERSMNEQLF 149

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
             L +       +  +   +            L+  +        +   +++   +    
Sbjct: 150 KDLFDRAIDGMVIFDQDGCMIDANHSFCQSFELQKTDLTDRYLNEFVEDENLPALQHLLT 209

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
              E      +      +      +    +   +               +     + E  
Sbjct: 210 SLKETGKAKGELPVTLQSGQYKLFELTITSNVMSGFYMSIMRDITEKRLMEEKLLKSEER 269

Query: 322 TPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
             E  +       ++   G +  AN S   + +      +        L+ + +      
Sbjct: 270 FREIFENAMDAIIIWADDGEIVRANESACRIFELPMHS-LIGKKLTDFLVKSDQRYRPTR 328

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
            + +  +      +         +        + F       +         I     D 
Sbjct: 329 RRYIRNHEIREELL--------FRMANGQFKELEFTSKHAVLEGQH----LTILRNVSDR 376

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +  + ++    ++   +   + DGI + + +  I+  N + S+L G   + +        
Sbjct: 377 KRMEEELRESELKFRKVFNGSMDGIVLFDNQYRIIEVNPSASELLGLKDDHLTEMNLFHI 436

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
           L       +      +   ++    E   + +  ++++L        +   +       D
Sbjct: 437 LAPYQVEHLAQPAQAMSLDEMDN--EVPFVLNHPDQRILEFSFKRNIIHNMN--LAIFRD 492

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           ++E K+ +      +           +  A ++HEIR P+TA+ GF +++K    G    
Sbjct: 493 VTERKELEE-----RVRKSDTLHVVGELAAGIAHEIRNPMTALKGFIQLLKGNIEG---- 543

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
             Y  Y N I      +  I+ + L ++K ++    + +E  ++ + V + + L+   AN
Sbjct: 544 -EYSLYFNVITSELKRIESIITEFLILAKPQA----IVYEEKNVVQIVKDTMDLLHAQAN 598

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
              + +  +  + IP I  +   +KQ+ +NIL NAI   P  G + ++      E +++ 
Sbjct: 599 LGNVQMHLNVMDEIPLIYCEQNQLKQVFINILKNAIEVMPRKGNVYVTIQRKGEEHIVIS 658

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           +RD G GM   +L +  +PF         +  GTGLGL ++  +++ + G   + S    
Sbjct: 659 LRDEGCGMAEDKLRRLGEPFYTT------KERGTGLGLMVSYKIIEEHQGTIEVESEEGV 712

Query: 801 GTLIEIIFPLYD 812
           GT+  +  PL  
Sbjct: 713 GTVFHLTLPLRQ 724



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/151 (21%), Positives = 56/151 (37%), Gaps = 10/151 (6%)

Query: 434 EPEDVDTRINKRKMEIEVMQLCS-------ILEATSDGIAIINREGIILSTNRAVSKLFG 486
             E +D   + RK+E E   L +       +L  T D I I ++   I+  N A  +L  
Sbjct: 1   MTETLDGAEDIRKLEKENEYLRTELMQQKMLLNKTLDAIFIFDKHLNIIQANEATCRLVQ 60

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
              ED+L K    FL       +   L          TL +      +  +   +  + +
Sbjct: 61  TSKEDLLNKSVLDFLYGIPKDKIECSLDLFFRKG---TLRREISIQLENGETKYIEFVAE 117

Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSHAKKI 577
               +  Y + M DIS  K  + + S  +++
Sbjct: 118 HDVLNQQYIVVMRDISSKKILERERSMNEQL 148


>gi|91977743|ref|YP_570402.1| ATP-binding region, ATPase-like [Rhodopseudomonas palustris BisB5]
 gi|91684199|gb|ABE40501.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisB5]
          Length = 812

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 117/705 (16%), Positives = 242/705 (34%), Gaps = 70/705 (9%)

Query: 140 QNTWYGKTTL------WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193
             TW+            PI G         +A+PI S     +G  G     +  +  +P
Sbjct: 10  GATWHRSRLRCYVAPPKPIAGHVAR-----SAVPIVSSTVRIAG-GGLAQKRIAMISENP 63

Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253
            A   R   K +       G   V+ ++  +   Q+         + +   E        
Sbjct: 64  EASILRALIKAAP-----DGVLLVDPQQRIVLFNQACEDLFGWTAREALGEEI-----AK 113

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
           L  +   L  S   S          +   +T       +     +    L+ +    +  
Sbjct: 114 LIPDWRELSRSTHRSSAL---ARRKDGASFTIALSTAPVPTGDADFHVVLARKRDEDVLP 170

Query: 314 YFDE--GENLTPETVDKCPI--PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
             D    E+     V+       F +  HG +   N     + +Y + + +      S  
Sbjct: 171 RADRNVDEHSFRRLVEGVTDYAIFMLDIHGCVSSWNRGAERIKQYTAAEILGR--HFSEF 228

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
               + +     + + L R +             + +     A   +     ++    + 
Sbjct: 229 YPEEQRASGEPARNLDLARDNGR---FETTGWRQRKDGSQFWA-HVVLEPLRDENGALIG 284

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
              +  +  + R  ++ +     ++ +++E   DG+ + +R G I + N A  +LFGY  
Sbjct: 285 YAKVATDITEQRRAEQVIREADARIHTLIETVVDGVILSDRLGRIRTFNLACHRLFGYEA 344

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKK 547
           ED++ +  ++ L   +   ++ +            +   +   G  ++ +   + + I +
Sbjct: 345 EDVIGRHISMLLPATSADEVHSFFRHGAYAGEHDRIGSVREMTGLRRDGRTFPMDLSIGE 404

Query: 548 LPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
                   + + +HD+++ K+ + +L  A+K+              ++H+    LT I+G
Sbjct: 405 TMQDGESVFVVVVHDLTDRKRTEEQLVQAQKMET-----VGQLSGGIAHDFNNLLTVIVG 459

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
            +E + +Q             A  I R+G    ++   LL  S+    +  L    +  +
Sbjct: 460 NAEFLGDQL---KARQDLRSLARDISRAGQRGAELTQRLLAFSR----RQTLKPVELDCN 512

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725
           E V     L++     + I+I T     +    AD   ++   LN+  NA      GG++
Sbjct: 513 ELVDSMHKLLRPTL-REDIVIDTDLDPGLRTAYADRSQLESAILNLALNAQDAMLGGGRL 571

Query: 726 IISTT--------------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
            I+T+                  + V++ V D G GM    LE   +PF          G
Sbjct: 572 SITTSNVSLDASYQVVNQDVRPGDYVLVSVTDNGSGMPREVLEHVFEPFYTTK----EVG 627

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           +G+GLGL +    V  + G   ++S P  GT + +  P   T  P
Sbjct: 628 KGSGLGLSMVYGFVKQSNGHVSVYSEPGLGTTVRLYLPAIATGQP 672



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/363 (6%), Positives = 81/363 (22%), Gaps = 37/363 (10%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D    +   ++      G  A + +G  +  +      +           ++T      
Sbjct: 82  VDPQQRIVLFNQACEDLFGWTAREALGEEIAKLI-PDWRE---------LSRSTHRSSAL 131

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +G +  + +  A +P    +      R         V             +     
Sbjct: 132 ARRKDGASFTIALSTAPVPTGDADFHVVLARK----RDEDVLPRADRNVDEHSFRRLVEG 187

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLR-MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
                   ++         +      +    ++        + ++   + +         
Sbjct: 188 VTDYAIFMLDIHGCVSSWNRGAERIKQYTAAEILGRHFSEFYPEEQRASGEPARNLDLAR 247

Query: 268 SLPEQED---FHTINLNQYTKKQYFGTLQNNSKE----SFEYLSHRNHPSLSAYFDEGEN 320
                E        + +Q+        L++ +      +                 E + 
Sbjct: 248 DNGRFETTGWRQRKDGSQFWAHVVLEPLRDENGALIGYAKVATDITEQRRAEQVIREADA 307

Query: 321 LTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEI----------AGGLSTL 369
                ++       +    G +   N +   L  Y++ D I            A  + + 
Sbjct: 308 RIHTLIETVVDGVILSDRLGRIRTFNLACHRLFGYEAEDVIGRHISMLLPATSADEVHSF 367

Query: 370 LDAPKLSDNNAI----KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
                 +  +      + +   R D         +     + E+   +         +  
Sbjct: 368 FRHGAYAGEHDRIGSVREMTGLRRDGRTFPMDLSIGETMQDGESVFVVVVHDLTDRKRTE 427

Query: 426 ENM 428
           E +
Sbjct: 428 EQL 430



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/387 (11%), Positives = 97/387 (25%), Gaps = 19/387 (4%)

Query: 25  LSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLD-SENTFVFDPIPRTV 83
           L+++K    F    S    P  D+        +  E V      +  E++F       T 
Sbjct: 131 LARRKDGASFTIALSTAPVPTGDADFHVVLARKRDEDVLPRADRNVDEHSFRRLVEGVTD 190

Query: 84  RFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK-RQNT 142
              + +D HG +   +    +     A +++G    +         +      L   ++ 
Sbjct: 191 YAIFMLDIHGCVSSWNRGAERIKQYTAAEILGRHFSEF-YPEEQRASGEPARNLDLARDN 249

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
              +TT W            +   P+   N    G+    +            + +  D 
Sbjct: 250 GRFETTGWRQRKDGSQFWAHVVLEPLRDENGALIGYAK--VATDITEQRRAEQVIREADA 307

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSP------PPHLRMKNKVSSLTEYYAHKDDVLKT 256
           +   L E       +      I +               +  +  S+       D+V   
Sbjct: 308 RIHTLIETVVDGVILSDRLGRIRTFNLACHRLFGYEAEDVIGRHISMLLPATSADEVHSF 367

Query: 257 EKYPLLTSEESSLPE--QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
            ++     E   +    +      +   +      G    + +  F  + H         
Sbjct: 368 FRHGAYAGEHDRIGSVREMTGLRRDGRTFPMDLSIGETMQDGESVFVVVVHDLTDRKRTE 427

Query: 315 FDEGENLTPETVDKCPIPFFVY--SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
               +    ETV +          +   +   N  FL        D       L+  +  
Sbjct: 428 EQLVQAQKMETVGQLSGGIAHDFNNLLTVIVGNAEFLGDQLKARQDL----RSLARDISR 483

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASAR 399
                    + ++ +   +T       
Sbjct: 484 AGQRGAELTQRLLAFSRRQTLKPVELD 510


>gi|229182146|ref|ZP_04309433.1| hypothetical protein bcere0005_54620 [Bacillus cereus 172560W]
 gi|228601320|gb|EEK58854.1| hypothetical protein bcere0005_54620 [Bacillus cereus 172560W]
          Length = 801

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 103/532 (19%), Positives = 212/532 (39%), Gaps = 47/532 (8%)

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVD-----KCPIPFFVYSHGNLFYANPSFLLL 351
            +  E +      +     +   + T E ++                G++  AN ++  +
Sbjct: 294 GQVIEVVGSTVDITERKKVESELSATKELLESFIKHNLDAITISDREGHILQANKAYEKI 353

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ-WNRENS 410
             + S + I            P + D    + +   +   T  +   RL T++  +  + 
Sbjct: 354 FGWSSQEIIGKRL--------PCVPDFLMEESLKNIQKILTGESVVTRLETVRQRSDGSL 405

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK-------MEIEVMQLCSILEATSD 463
           L ++       +     +  + I  +  + +  +R+       +    M+  +++E  +D
Sbjct: 406 LDVSLTVSPILDVRGNVIALSAICRDISERKQAERERHRLHQQLRDSEMKYRALIEQATD 465

Query: 464 GIAI--INREG---IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
            + +  +N +      +  N    + FGY  E++L   F+  + Q++  ++   L +I  
Sbjct: 466 AVYVVELNEDNAPSRFIEVNPVGCRRFGYSREELLSLSFSNIVPQDSQIIVR-LLEKIKK 524

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578
                TL+   +  T +       + +  L     +     DI+E  + +  L  ++K+A
Sbjct: 525 GQTSFTLQDEYVFPTGKVITTEFSVRVFNLNGKKVFLSISRDITERLKTEELLRKSEKLA 584

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
                        ++HEI  PLTA+ GF +++K+       N     Y N +      + 
Sbjct: 585 VV-----GQLATVMAHEINNPLTAMKGFMQLLKSTE-----NENNQSYINIVSSEIERIE 634

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
            I  + + ++K +  KM  +    ++   + + + L+Q  A    I IR      IP I 
Sbjct: 635 SITTEFMAVAKPQVVKMQPN----NISVLMDQVLMLLQPQAMMNNIKIRIDLNPGIPLIS 690

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
            +   +KQ+ +NIL NAI   P GG+I+I      N ++ +R  D G G+    +    +
Sbjct: 691 CEGNQLKQVFVNILKNAIESMPMGGEILIQLNILDNNQLSIRFIDQGCGIPKERIPYLGE 750

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           PF        I+ EG GLGL +   +++ + GK +I S   KGT +E+  P+
Sbjct: 751 PFY------SIKEEGIGLGLMICYKIIETHQGKVFIESEVNKGTTVEVTLPI 796



 Score =  108 bits (269), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 44/286 (15%), Positives = 91/286 (31%), Gaps = 21/286 (7%)

Query: 313 AYFDEGENLTPETVDKCPIPFF----VYSHGNLFYANPSFLLLTKYKSVDDIEI-AGGLS 367
               + +    +TV +     F    V  H      +  F     + S   +      + 
Sbjct: 186 RELKKSKQELADTVHELQGGIFKFKKVGKHFIHTLCDGQFYYQNGFYSEQVVGKSLRTID 245

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
             +  P L          L   +   I        + W  + ++ +         +  + 
Sbjct: 246 ASIVPPHLVPQLMKY--YLQAWEGKEIIFE-----LPWPNDKTIILI--ALRPIKRNGQV 296

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
           +   G   +  + +  + ++      L S ++   D I I +REG IL  N+A  K+FG+
Sbjct: 297 IEVVGSTVDITERKKVESELSATKELLESFIKHNLDAITISDREGHILQANKAYEKIFGW 356

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
             ++I+ K     +           + +IL           T+    +  LL + + +  
Sbjct: 357 SSQEIIGKRL-PCVPDFLMEESLKNIQKIL-TGESVVTRLETVRQRSDGSLLDVSLTVSP 414

Query: 548 LPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
           +               DISE KQ + +     +   ++S  K   L
Sbjct: 415 ILDVRGNVIALSAICRDISERKQAERERHRLHQQL-RDSEMKYRAL 459



 Score = 61.2 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 38/286 (13%), Positives = 84/286 (29%), Gaps = 23/286 (8%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG-KTT 148
           D  G++ + ++   K  G  + ++IG RL  V D L  +   +I  +L  ++     +T 
Sbjct: 338 DREGHILQANKAYEKIFGWSSQEIIGKRLPCVPDFLMEESLKNIQKILTGESVVTRLETV 397

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +G+ L V + ++  PI              I               RL ++     
Sbjct: 398 RQRSDGSLLDVSLTVS--PILDVRGNVIALS--AICRDISERKQAERERHRLHQQLRDSE 453

Query: 209 EIKKGHSSVEKEKYDIFSQQS-----------PPPHLR---MKNKVSSLTEY-YAHKDDV 253
              +       +   +                P    R    + ++ SL+      +D  
Sbjct: 454 MKYRALIEQATDAVYVVELNEDNAPSRFIEVNPVGCRRFGYSREELLSLSFSNIVPQDSQ 513

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
           +       +   ++S   Q+++        T +               +LS     +   
Sbjct: 514 IIVRLLEKIKKGQTSFTLQDEYVFPTGKVITTEFSVRVFN--LNGKKVFLSISRDITERL 571

Query: 314 YFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVD 358
             +E    + +      +     +   N   A   F+ L K    +
Sbjct: 572 KTEELLRKSEKLAVVGQLATVMAHEINNPLTAMKGFMQLLKSTENE 617


>gi|253576380|ref|ZP_04853710.1| histidine kinase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251844273|gb|EES72291.1| histidine kinase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 479

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 82/374 (21%), Positives = 154/374 (41%), Gaps = 28/374 (7%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF----GYPVEDILRKPFTVF 500
           R ++ E   L S+L + +D +  ++REG ++ TN    +L         +     P +  
Sbjct: 120 RSLKHEKEHLSSVLRSMNDAVITLDREGAVILTNPPGDRLLQLWGDLTEDGEEDLPASAG 179

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
             Q  P  +      +L  +  Q +    +       +  L                + D
Sbjct: 180 EGQMVPQPLLPMFRRLLVQESDQKMNVHVMKGVWSVHMAPLS----SDGEVRGAVAVLRD 235

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           ++E    +                + DF+A VSHEIRTPL+ + G+SE + +        
Sbjct: 236 VTEEVNLE--------------KMRRDFVANVSHEIRTPLSMMQGYSEALLDGM--ASSP 279

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
               E A  I      +  +V DLLD++++E+G  ++    +   E         Q+ A 
Sbjct: 280 EESAELAQVIYDESLRMGRLVRDLLDLARMEAGHTDMVMRKIDFRELAERVDRKFQVRAK 339

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EV 737
           +  + +     +   ++ AD   ++Q+  N+L NA   TP GG++ +     + E   ++
Sbjct: 340 DNGVELVLELEDGELQLQADEDRLEQVLTNLLDNAFRHTPEGGKVTVKAHMETGEMGKQL 399

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGEGTGLGLPLAKAMVDANMGKFYIFS 796
            + V DTGVG+ + +L      F +   ++      GTGLGL + K ++ A+ G  +  S
Sbjct: 400 HVAVSDTGVGIPSEDLRYIFDRFYKADKARVRGENGGTGLGLSIVKNIIAAHHGSIWADS 459

Query: 797 TPAKGTLIEIIFPL 810
              KGT+   + P+
Sbjct: 460 EIGKGTVFHFLLPV 473


>gi|254476816|ref|ZP_05090202.1| sensor histidine kinase/response regulator [Ruegeria sp. R11]
 gi|214031059|gb|EEB71894.1| sensor histidine kinase/response regulator [Ruegeria sp. R11]
          Length = 778

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 113/454 (24%), Positives = 198/454 (43%), Gaps = 22/454 (4%)

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
           L+D    +      ++R      A L           A+       A +      ++   
Sbjct: 3   LADRLKEERRARLAAERLLELKQAELSAANRKLGR-HALALTREIGATKAEVEKTKDENA 61

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
              +D      K+E    +L   ++A  DG A  + +G ++S N A  +LF    E    
Sbjct: 62  KVKLDLSTANEKVERAEQRLWDSIQAIQDGFAFFDSDGKLISANAAYLELFDGLEEVEPG 121

Query: 495 KPFTVFLEQNTPSVMN-------HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
             +   L+  T   +              ++        +  +    +++ L L   + +
Sbjct: 122 VSYVRLLQILTDEGLINTGERDPDDWRAEMTERWLHPTPEPVVVRMWDDRYLRL---VDQ 178

Query: 548 LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
              S        DI+   Q + +L  A++ AE  +  KS FLA +SHEIRTP+  ++G +
Sbjct: 179 RGNSGDMVSMALDITASVQYEEELEAARERAEAANRAKSAFLANMSHEIRTPMNGVVGMA 238

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
           E++ +       +     YAN I  SG  +L I+ND+LD SKIE+ K+ LH EP  L+ +
Sbjct: 239 ELLSDTNL----SEEQRLYANTIKNSGEALLVIINDVLDYSKIEAQKLILHPEPFDLERS 294

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG--- 723
           V E + L+Q  A EK + +   +   +P   + D   ++Q+  N++ NA+ FT  G    
Sbjct: 295 VHEVLMLLQPTAREKGLNLILDYDLFLPTSFVGDPGRIRQVLTNLVGNAVKFTTEGHVNL 354

Query: 724 QII-ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
           QI  IS+       + + + DTG+G+   +++     F Q+ + Q  + EGTGLGL + K
Sbjct: 355 QITGISSPEDEFCSIHVAIEDTGIGIPAEKVQHIFGEFNQVDDEQNRKFEGTGLGLAITK 414

Query: 783 AMVDANMGKFYIFSTPAKGTL--IEIIFPLYDTS 814
            +++   G+ ++ S   KG+     I  PL   S
Sbjct: 415 RLIELMGGEIWVESEVGKGSCFGFRIKLPLAAES 448


>gi|119486747|ref|ZP_01620722.1| Signal Transduction Histidine Kinase (STHK) with CheB and CheR
            activity [Lyngbya sp. PCC 8106]
 gi|119456040|gb|EAW37173.1| Signal Transduction Histidine Kinase (STHK) with CheB and CheR
            activity [Lyngbya sp. PCC 8106]
          Length = 1471

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 129/701 (18%), Positives = 259/701 (36%), Gaps = 66/701 (9%)

Query: 155  TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR-----LDKKFSHLHE 209
            ++L +P+  +      RN+E   + G  I   N+ +     +G +     L+  F  L E
Sbjct: 565  SDLKLPLATSLHRAK-RNKEPVMYNGIKISRNNQSETVRLKIGYQPDIDNLEDYFIVLLE 623

Query: 210  IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
            ++      E +                  ++ +L        + L+     L T  E   
Sbjct: 624  VENP----ENQPPVSVQSTRYEIESEAAQRIVALENELQQTRENLQAVVEELETFNEEQQ 679

Query: 270  PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
               E+    N    +  +   +              +         DE   L    +   
Sbjct: 680  ATNEELLASNEELQSTNEELQSANEELYTVNAEYQLKIEQLTQLTDDEDNLLRSTNLGVL 739

Query: 330  PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389
                F+  + N+    P+       +  D        +  LD P L     ++ +    +
Sbjct: 740  ----FLDLNLNIRRFTPAATQAINIRPSDVNRSLFDFTNNLDCPNL-----LEVLQQVLA 790

Query: 390  DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449
                      L T          +         +                 +  ++++E 
Sbjct: 791  TEEAQEKEVTLST------TGEQLLMRMNCYLREENSCDGIVITFVNINQIKKVQQRLEN 844

Query: 450  EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
                L ++  ++  G+ I++     L  N  ++++    VED L K  +  + Q     +
Sbjct: 845  TNNLLENLNLSSPVGLFIVDSNLQFLRVNPRLAEMNNRSVEDYLGKRLSEVIPQLADEQL 904

Query: 510  NHYLTEILSLDLRQTLEKITLGS---TKEEKLLSL--RIIIKKLPFSSCYSLTMHDISEW 564
                  +L             G      + +   L     ++           + DI+  
Sbjct: 905  MPVYQHVLGTGEP-VRNIEVQGRESTDPQTQSYWLVTYYSVEWDHGEQAIGGIIVDITAR 963

Query: 565  KQEK------------------NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
            KQ +                   +L  AK+ AE  ++ KS FL+RV+HE+R+PL  I+GF
Sbjct: 964  KQAELALDQLNQSLEERVRHRTQELEEAKQKAETANNAKSQFLSRVTHELRSPLNIILGF 1023

Query: 607  SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
            ++++  +R   L + +  +  N I  +G  +L ++N+LLD+ K+E+ +M L+ E   L  
Sbjct: 1024 TQLL--ERCDNLDSQQQQQ-VNLIFNNGQQLLKLINELLDLGKVEANRMELNVEWFDLYC 1080

Query: 667  AVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-- 723
             + E   + +L    K +  R +  + +P +I  D   ++Q+ +N+++NAI FT  G   
Sbjct: 1081 LMDELQEMFKLEIQRKGLEFRVNLDSQVPQQIQTDKTKLRQVLINLITNAIKFTDVGQIC 1140

Query: 724  -QIIISTTHTSNEE-----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
             ++ + +T ++  E     +   V DTG G+   EL++  +PF Q  + +  + +GTGLG
Sbjct: 1141 LRVNVDSTLSNQNEDQSLKLRFEVEDTGRGIPPEELDRLFEPFVQGKSGRNSQ-QGTGLG 1199

Query: 778  LPLAKAMVDANMGKFYIFSTPAKGTLIEIIF----PLYDTS 814
            L + +  V+   G+  + ST   GT I        P+  ++
Sbjct: 1200 LAICRYFVEMMGGEIGVNSTLGAGTRIHFSIVSNSPVKRSA 1240



 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/171 (9%), Positives = 46/171 (26%), Gaps = 7/171 (4%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI-GDLLKRQNTWYGKT 147
            +D++     ++  L +         +G RL +V   L  +    +   +L          
Sbjct: 863  VDSNLQFLRVNPRLAEMNNRSVEDYLGKRLSEVIPQLADEQLMPVYQHVLGTGEPVRNIE 922

Query: 148  TLWP--IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
                   +       +       +    +  G    GI+              +L++   
Sbjct: 923  VQGRESTDPQTQSYWLVTYYSVEWDHGEQAIG----GIIVDITARKQAELALDQLNQSLE 978

Query: 206  HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256
                 +       K+K +  +        R+ +++ S          +L+ 
Sbjct: 979  ERVRHRTQELEEAKQKAETANNAKSQFLSRVTHELRSPLNIILGFTQLLER 1029


>gi|56965855|ref|YP_177589.1| two-component sensor histidine kinase [Bacillus clausii KSM-K16]
 gi|56912101|dbj|BAD66629.1| two-component sensor histidine kinase [Bacillus clausii KSM-K16]
          Length = 612

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 100/569 (17%), Positives = 209/569 (36%), Gaps = 35/569 (6%)

Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303
            +      D L    +P           Q   +   +   +  +    +   + ++    
Sbjct: 67  EDPEERDLDTLVRNAFPQNDENTRKGKAQVIGYNSVVLASSSDEDANIIDQQTDQTIVKR 126

Query: 304 SHRNHPSLSAYFDE-GENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEI 362
           +    P+         E+     +   P+       G +  A      +         + 
Sbjct: 127 ALTGTPTYEFQERINQEDQERYIIKAHPVRSNEDGTGEILGAVYIEASIEGVS-----KQ 181

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA-SARLHTIQWNRENSLAMTFIPFEKA 421
           A  ++ +  +           V++  +    +     R   ++ +  +            
Sbjct: 182 AQAINRIFISATGIAMVVTFLVIILLARTITMPILDMRRQALRMSHGDFSRQV--RVYST 239

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
           ++  +           +      R  + E  +L S+L   +DG+   ++ G+I+  NR  
Sbjct: 240 DELGQLATAFNELTNRLHDTTLMR--DREQKRLRSVLAHMTDGVIATDQSGLIILMNRRA 297

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
            +L G P++ +LR+P    L       +         L L  +  +  +        ++ 
Sbjct: 298 EELLGIPLKHVLRRPIMNVLRMEEEVSIFELYERNEPLLLDLSTGEEPIMLE-----VNF 352

Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
             I +     +     +HD++E ++ +N+              + +F+A VSHE+RTPLT
Sbjct: 353 SAIQEDEGPFNGLIAVLHDVTEKEKIENE--------------RREFVANVSHELRTPLT 398

Query: 602 AIIGFSEVIKNQRFGPLGNPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
            +  + E + +   G + +      +     +  + ++ +VNDLL +SKI+S    L   
Sbjct: 399 TMKSYLEALAD---GAMQDEDIAPRFLEVTQKETDRMIRLVNDLLQLSKIDSNDYRLDLH 455

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720
            V L   +   +   ++   +K I      A     +  D   + Q+  NILSNAI ++P
Sbjct: 456 WVELGAFLHSIVERFEMVVKDKNIDFHRHIAKQPTYVKIDTDKMTQVLDNILSNAIKYSP 515

Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
           SGG + I+       +  + + D G+G+     +K  + F ++  ++     GTGLGL +
Sbjct: 516 SGGNVTITL-LHQGNKARISIADEGLGIPAESQDKIFERFYRVDKARARNVGGTGLGLAI 574

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           A   V A+ G  ++ S   +GT I I  P
Sbjct: 575 ASEYVHAHEGDIWVHSEYNEGTTIYITLP 603


>gi|302878536|ref|YP_003847100.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
           ES-2]
 gi|302581325|gb|ADL55336.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
           ES-2]
          Length = 872

 Score =  325 bits (832), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 116/563 (20%), Positives = 221/563 (39%), Gaps = 48/563 (8%)

Query: 284 TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY 343
              +   + ++                      +      E +D   +   V +   L  
Sbjct: 102 PDGEVQASTRSEYINRHFSDPVSQRMLGKVVQTKILKNNQELID---VAVPVLAGTRLIG 158

Query: 344 ANP-SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT 402
                        ++  I  AG   TLL    +            R  +       RL  
Sbjct: 159 WVRVEMSRDRANANLSKIAAAGFAITLLLVLMIVLIATWLADRFTRGLQ-------RLSA 211

Query: 403 IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
           +  N E+  +      E+ ++            +       ++       +   +    +
Sbjct: 212 VADNAEHGRSFARDDSERQDELGILARHIYKMLD--AKAEEEKGRLDSEARYSVVFNNAA 269

Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV--FLEQNTPSVMNHYLTEILSLD 520
            G+A I   G  +  N+   K+ GY  E+IL + FT       +  +V + Y+ ++L+ D
Sbjct: 270 VGLAQIAISGQFIQINQEFCKIIGYTQEEILSQNFTFERITHPDDIAVDHEYIRQLLAGD 329

Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHA-- 574
            +  +        ++  L+ + + +     S          + D+SE KQ +N+L     
Sbjct: 330 RQSYM-LEKRYIRRDGGLVWVNLSVYLQRDSRGDPLYLISAVLDLSERKQAENELKRYKD 388

Query: 575 ----------------KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
                           +  AE  +  KS FL+ +SHE+RTPL AI+GFS ++       +
Sbjct: 389 HLEEEVQQRTADLVLARDAAEAANRAKSVFLSSMSHELRTPLNAILGFSALMSRD---TM 445

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
            +    E  N I+RSG  +L ++ND+L+++KIE+G++ +  E   L   V +   ++ + 
Sbjct: 446 LSHIQRENLNIINRSGEHLLSLINDVLEMAKIEAGRVQVLHEAFDLGALVRDVSDMMAVR 505

Query: 679 ANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN--- 734
           A EK + +    +++ PR I+ D   ++Q+ +N++ NA+ FT  GG I +      N   
Sbjct: 506 AQEKGLQLLVDQSSDFPRYIMGDEARLRQVLINLVGNAVKFTQHGG-ITMRFGIKPNLLP 564

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
           E +++ V D+G+G+   + ++    F QI        +GTGLGL + +  V    G   +
Sbjct: 565 ERLLIEVEDSGIGIKPEDQQRIFDAFVQI--GDLSAQKGTGLGLTITRQFVQLMGGVITL 622

Query: 795 FSTPAKGTLIEIIFPLYDTSHPH 817
            STP  G +  +  P+   S   
Sbjct: 623 ESTPGVGAVFSVELPIEKVSPAE 645



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/247 (10%), Positives = 67/247 (27%), Gaps = 13/247 (5%)

Query: 93  GYLKEISEELPKTIGNYAFKMIGM--RLCDVSDILHIDPNNH-IGDLLKR-QNTWYGKTT 148
           G   +I++E  K IG    +++        ++    I  ++  I  LL   + ++  +  
Sbjct: 279 GQFIQINQEFCKIIGYTQEEILSQNFTFERITHPDDIAVDHEYIRQLLAGDRQSYMLEKR 338

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +G    V ++L+         +         V             KR         
Sbjct: 339 YIRRDGGL--VWVNLSVYLQRDSRGDP--LYLISAVLDLSERKQAENELKRYKDHLEEEV 394

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           + +     + ++  +  ++        M +++             L +    L   +  +
Sbjct: 395 QQRTADLVLARDAAEAANRAKSVFLSSMSHEL-RTPLNAILGFSALMSRDTMLSHIQREN 453

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKE----SFEYLSHRNHPSLSAYFDEGENLTPE 324
           L          L+          ++    +    +F+  +     S        E     
Sbjct: 454 LNIINRSGEHLLSLINDVLEMAKIEAGRVQVLHEAFDLGALVRDVSDMMAVRAQEKGLQL 513

Query: 325 TVDKCPI 331
            VD+   
Sbjct: 514 LVDQSSD 520


>gi|159899975|ref|YP_001546222.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159893014|gb|ABX06094.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 958

 Score =  325 bits (832), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 113/703 (16%), Positives = 245/703 (34%), Gaps = 71/703 (10%)

Query: 119 CDVSDILHIDP--NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFS 176
            +++  L  D   +  I   +   N   G   +   +G      +       Y  ++  +
Sbjct: 312 RELASSLDPDQLLSRIIQHTVAAVNAERGSIIISSQDGRTTQRIV-----ARYGMDQSVT 366

Query: 177 GFRGFGIVHVNRVDNDPRALGKR----LDKKFSHLHEIKKGHSSVEKEKYD-IFSQQSPP 231
                       V       G        ++ + + +++     VE              
Sbjct: 367 ----------ESVAAALLQAGLSGWVFRQREAARIADVRVDKRWVELPSTRGRVRSALAV 416

Query: 232 PHLRMKNKVSSLTEYYAHKD-DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG 290
           P LR    +  +T  +   D       +     S ++++  +       L Q        
Sbjct: 417 PLLREDQVLGVMTLTHPRIDHFSAADLELVRSVSAQAAVAIENANLFAELEQRVFDLEGL 476

Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLL 350
              +    S                +  +      +        V             + 
Sbjct: 477 NSTSRELASSLDPLEVARKVAYRCAEMLDASMVALLH-------VDDKQGTL----PLVS 525

Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
           L   +    +++    + L D   +  N+A   + L  ++   +  S     +      +
Sbjct: 526 LINGQEQPLLKLGPISAALNDPEPVLLNSAGSQIELLVNNEEPLGESWIGVPLMLGDGIN 585

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM----EIEVMQLCSILEATSDGIA 466
             +      +                     +   ++      E   L +++E+ SDGI 
Sbjct: 586 GLLIAADERRDAFDAYERQLLTALAGQAAVAMESARLYVTASEERTLLAAVIESVSDGIL 645

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
           + + EG I+  N A   + G     ++ +P   F                         +
Sbjct: 646 LTD-EGQIVVANPAAGAIAGVSNSRLVNQPLLTFFPMLAMLARRE--------------D 690

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
             +       +  ++     +        + + DI+ +K              +    KS
Sbjct: 691 HESKEIAISNRYYAVNTAPLQNSSLGGQVIVLQDITHFK--------------ELDQIKS 736

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
            F++ VSH++++PLTAI G+++++ +   G + N    +    + R+   +  +++DLLD
Sbjct: 737 RFVSMVSHDLKSPLTAIQGYAQLVADGHMGTV-NEMQRDALQAVVRNTGAMTALISDLLD 795

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706
           + KIE+G + +  +   L   + E I  ++L A   +I ++     ++P + AD   ++Q
Sbjct: 796 LGKIEAG-IGISPQETDLAVVLREVIDELKLRAKMGQISVQPEIPPSLPLV-ADPSRMRQ 853

Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
           +  NILSNAI +TPSGGQ+ I   +  + ++ ++++D+G+G+    L    + F ++   
Sbjct: 854 VFTNILSNAIKYTPSGGQVQIR-ANNGDAKMHVQIQDSGLGIPEDSLPHIFERFYRVKRD 912

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
                EGTGLGL + K++VD + G   + S   +GT   +  P
Sbjct: 913 IDSPIEGTGLGLAITKSIVDEHGGTIEVQSVIGEGTTFNVYLP 955


>gi|229113327|ref|ZP_04242787.1| hypothetical protein bcere0018_55070 [Bacillus cereus Rock1-15]
 gi|228670125|gb|EEL25508.1| hypothetical protein bcere0018_55070 [Bacillus cereus Rock1-15]
          Length = 801

 Score =  325 bits (832), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 103/532 (19%), Positives = 211/532 (39%), Gaps = 47/532 (8%)

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVD-----KCPIPFFVYSHGNLFYANPSFLLL 351
            +  E +      +     +   + T E ++                G++  AN ++  +
Sbjct: 294 GQVIEVVGSTVDITERKKVESELSATKELLESFIKHNLDAITISDREGHILQANKAYEKI 353

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ-WNRENS 410
             + S + I            P + D    + +   +   T  +   RL T++  +  + 
Sbjct: 354 FGWSSQEIIGKRL--------PCVPDFLMEESLENIQKILTGESVVTRLETVRQRSDGSL 405

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK-------MEIEVMQLCSILEATSD 463
           L ++       +     +  + I  +  + +  +R+       +    M+  +++E  +D
Sbjct: 406 LDISLTVSPILDVRGNVIALSAICRDISERKQAERERHRLHQQLRDSEMKYRALIEQATD 465

Query: 464 GIAI--INREG---IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
            + +  +N +      +  N    + FGY  E++L   F+  + Q++  ++   L +I  
Sbjct: 466 AVYVVELNEDNAPSRFIEVNPVGCRRFGYSREELLSLSFSNIVPQDSQIIVR-LLEKIKK 524

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578
                TL+   +  T +       + +  L     +     DI+E  + +  L  ++K+A
Sbjct: 525 GQTSFTLQDEYVFPTGKVITTEFSVRVFNLNGKKVFLSISRDITERLKTEELLRKSEKLA 584

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
                        ++HEI  PLTA+ GF +++K+       N     Y N +      + 
Sbjct: 585 VV-----GQLATVMAHEINNPLTAMKGFMQLLKSTE-----NENNQGYINIVSSEIERIE 634

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
            I  + + ++K +  KM  +    ++   + + + L+Q  A    I  R      IP I 
Sbjct: 635 SITTEFMAVAKPQVVKMQPN----NISVLMDQVLMLLQPQAMMHNIKFRIDLNPGIPLIS 690

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
            +   +KQ+ +NIL NAI   P GG+I+I      N +V +R  D G G+    +    +
Sbjct: 691 CEGNQLKQVFVNILKNAIESMPMGGEILIQINILDNNQVSIRFIDQGCGIPKERIPYLGE 750

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           PF        I+ EG GLGL +   +++ + GK +I S   KGT +E+  P+
Sbjct: 751 PFY------SIKEEGIGLGLMICYKIIETHQGKIFIKSEMNKGTTVEVTLPI 796



 Score =  108 bits (271), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 44/286 (15%), Positives = 91/286 (31%), Gaps = 21/286 (7%)

Query: 313 AYFDEGENLTPETVDKCPIPFF----VYSHGNLFYANPSFLLLTKYKSVDDIEI-AGGLS 367
               + +    +TV +     F    V  H      +  F     + S   +      + 
Sbjct: 186 RELKKSKQELTDTVHELQGGIFKFKKVDKHFIHTLCDGQFYYQNGFYSEQVVGKSLRTID 245

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
             +  P L          L   +   I        + W  + ++ +         +  + 
Sbjct: 246 ASIIPPHLVPQLMKY--YLQAWEGKEIIFE-----LPWPNDKTIILI--ALRPIKRNGQV 296

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
           +   G   +  + +  + ++      L S ++   D I I +REG IL  N+A  K+FG+
Sbjct: 297 IEVVGSTVDITERKKVESELSATKELLESFIKHNLDAITISDREGHILQANKAYEKIFGW 356

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
             ++I+ K     +           + +IL           T+    +  LL + + +  
Sbjct: 357 SSQEIIGKRL-PCVPDFLMEESLENIQKIL-TGESVVTRLETVRQRSDGSLLDISLTVSP 414

Query: 548 LPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
           +               DISE KQ + +     +   ++S  K   L
Sbjct: 415 ILDVRGNVIALSAICRDISERKQAERERHRLHQQL-RDSEMKYRAL 459



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 37/286 (12%), Positives = 84/286 (29%), Gaps = 23/286 (8%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG-KTT 148
           D  G++ + ++   K  G  + ++IG RL  V D L  +   +I  +L  ++     +T 
Sbjct: 338 DREGHILQANKAYEKIFGWSSQEIIGKRLPCVPDFLMEESLENIQKILTGESVVTRLETV 397

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +G+ L + + ++  PI              I               RL ++     
Sbjct: 398 RQRSDGSLLDISLTVS--PILDVRGNVIALS--AICRDISERKQAERERHRLHQQLRDSE 453

Query: 209 EIKKGHSSVEKEKYDIFSQQS-----------PPPHLR---MKNKVSSLTEY-YAHKDDV 253
              +       +   +                P    R    + ++ SL+      +D  
Sbjct: 454 MKYRALIEQATDAVYVVELNEDNAPSRFIEVNPVGCRRFGYSREELLSLSFSNIVPQDSQ 513

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
           +       +   ++S   Q+++        T +               +LS     +   
Sbjct: 514 IIVRLLEKIKKGQTSFTLQDEYVFPTGKVITTEFSVRVFN--LNGKKVFLSISRDITERL 571

Query: 314 YFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVD 358
             +E    + +      +     +   N   A   F+ L K    +
Sbjct: 572 KTEELLRKSEKLAVVGQLATVMAHEINNPLTAMKGFMQLLKSTENE 617


>gi|30021212|ref|NP_832843.1| sporulation kinase [Bacillus cereus ATCC 14579]
 gi|229128436|ref|ZP_04257416.1| hypothetical protein bcere0015_28820 [Bacillus cereus BDRD-Cer4]
 gi|296503641|ref|YP_003665341.1| sporulation kinase [Bacillus thuringiensis BMB171]
 gi|6686907|emb|CAB64771.1| kin1 [Bacillus cereus ATCC 14579]
 gi|6759471|emb|CAB69799.1| putative sensory transduction histidine kinase [Bacillus cereus
           ATCC 14579]
 gi|29896766|gb|AAP10044.1| Sporulation kinase [Bacillus cereus ATCC 14579]
 gi|228655019|gb|EEL10877.1| hypothetical protein bcere0015_28820 [Bacillus cereus BDRD-Cer4]
 gi|296324693|gb|ADH07621.1| sporulation kinase [Bacillus thuringiensis BMB171]
          Length = 801

 Score =  325 bits (832), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 103/532 (19%), Positives = 211/532 (39%), Gaps = 47/532 (8%)

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVD-----KCPIPFFVYSHGNLFYANPSFLLL 351
            +  E +      +     +   + T E ++                G++  AN ++  +
Sbjct: 294 GQVIEVVGSTVDITERKKVESELSATKELLESFIKHNLDAITISDREGHILQANKAYEKI 353

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ-WNRENS 410
             + S + I            P + D    + +   +   T  +   RL T++  +  + 
Sbjct: 354 FGWSSQEIIGKRL--------PCVPDFLMEESLENIQKILTGESVVTRLETVRQRSDGSL 405

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK-------MEIEVMQLCSILEATSD 463
           L ++       +     +  + I  +  + +  +R+       +    M+  +++E  +D
Sbjct: 406 LDISLTVSPILDVRGNVIALSAICRDISERKQAERERHRLHQQLRDSEMKYRALIEQATD 465

Query: 464 GIAI--INREG---IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
            + +  +N +      +  N    + FGY  E++L   F+  + Q++  ++   L +I  
Sbjct: 466 AVYVVELNEDNAPSRFIEVNPVGCRRFGYSREELLSLSFSNIVPQDSQIIVR-LLEKIKK 524

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578
                TL+   +  T +       + +  L     +     DI+E  + +  L  ++K+A
Sbjct: 525 GQTSFTLQDEYVFPTGKVITTEFSVRVFNLNGKKVFLSISRDITERLKTEELLRKSEKLA 584

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
                        ++HEI  PLTA+ GF +++K+       N     Y N +      + 
Sbjct: 585 VV-----GQLATVMAHEINNPLTAMKGFMQLLKSTE-----NENNQGYINIVSSEIERIE 634

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
            I  + + ++K +  KM  +    ++   + + + L+Q  A    I  R      IP I 
Sbjct: 635 SITTEFMAVAKPQVVKMQPN----NISVLMDQVLMLLQPQAMMHNIKFRIDLNPGIPLIS 690

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
            +   +KQ+ +NIL NAI   P GG+I+I      N +V +R  D G G+    +    +
Sbjct: 691 CEGNQLKQVFVNILKNAIESMPMGGEILIQINILDNNQVSIRFIDQGCGIPKERIPYLGE 750

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           PF        I+ EG GLGL +   +++ + GK +I S   KGT +E+  P+
Sbjct: 751 PFY------SIKEEGIGLGLMICYKIIETHQGKIFIKSEMNKGTTVEVTLPI 796



 Score =  108 bits (271), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 44/286 (15%), Positives = 91/286 (31%), Gaps = 21/286 (7%)

Query: 313 AYFDEGENLTPETVDKCPIPFF----VYSHGNLFYANPSFLLLTKYKSVDDIEI-AGGLS 367
               + +    +TV +     F    V  H      +  F     + S   +      + 
Sbjct: 186 RELKKSKQELTDTVHELQGGIFKFKKVDKHFIHTLCDGQFYYQNGFYSEQVVGKSLRTID 245

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
             +  P L          L   +   I        + W  + ++ +         +  + 
Sbjct: 246 ASIIPPHLVPQLMKY--YLQAWEGKEIIFE-----LPWPNDKTIILI--ALRPIKRNGQV 296

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
           +   G   +  + +  + ++      L S ++   D I I +REG IL  N+A  K+FG+
Sbjct: 297 IEVVGSTVDITERKKVESELSATKELLESFIKHNLDAITISDREGHILQANKAYEKIFGW 356

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
             ++I+ K     +           + +IL           T+    +  LL + + +  
Sbjct: 357 SSQEIIGKRL-PCVPDFLMEESLENIQKIL-TGESVVTRLETVRQRSDGSLLDISLTVSP 414

Query: 548 LPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
           +               DISE KQ + +     +   ++S  K   L
Sbjct: 415 ILDVRGNVIALSAICRDISERKQAERERHRLHQQL-RDSEMKYRAL 459



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 37/286 (12%), Positives = 84/286 (29%), Gaps = 23/286 (8%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG-KTT 148
           D  G++ + ++   K  G  + ++IG RL  V D L  +   +I  +L  ++     +T 
Sbjct: 338 DREGHILQANKAYEKIFGWSSQEIIGKRLPCVPDFLMEESLENIQKILTGESVVTRLETV 397

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +G+ L + + ++  PI              I               RL ++     
Sbjct: 398 RQRSDGSLLDISLTVS--PILDVRGNVIALS--AICRDISERKQAERERHRLHQQLRDSE 453

Query: 209 EIKKGHSSVEKEKYDIFSQQS-----------PPPHLR---MKNKVSSLTEY-YAHKDDV 253
              +       +   +                P    R    + ++ SL+      +D  
Sbjct: 454 MKYRALIEQATDAVYVVELNEDNAPSRFIEVNPVGCRRFGYSREELLSLSFSNIVPQDSQ 513

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
           +       +   ++S   Q+++        T +               +LS     +   
Sbjct: 514 IIVRLLEKIKKGQTSFTLQDEYVFPTGKVITTEFSVRVFN--LNGKKVFLSISRDITERL 571

Query: 314 YFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVD 358
             +E    + +      +     +   N   A   F+ L K    +
Sbjct: 572 KTEELLRKSEKLAVVGQLATVMAHEINNPLTAMKGFMQLLKSTENE 617


>gi|116748886|ref|YP_845573.1| multi-sensor signal transduction histidine kinase [Syntrophobacter
            fumaroxidans MPOB]
 gi|116697950|gb|ABK17138.1| PAS/PAC sensor signal transduction histidine kinase [Syntrophobacter
            fumaroxidans MPOB]
          Length = 1028

 Score =  325 bits (832), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 101/775 (13%), Positives = 246/775 (31%), Gaps = 86/775 (11%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID-PNNHIGDLLKRQNTWYGKT 147
            +D +G +   +    +  G    ++IG    +             +   L          
Sbjct: 287  LDRNGRIVRFNAACERLTGWRVDEVIGRCFWEFLVPEEQRRGVLQVFQGLTTGKFPSRHE 346

Query: 148  TLW-PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS- 205
              W   +G+     I  A   +     +     G GI              +  ++    
Sbjct: 347  NEWILRDGS--RRWITWANSCLLDAKGDIVHVIGTGI--DITERQRAEQALRESERLARD 402

Query: 206  ------HLHEIKKGHSSVEKEKY-DIFSQQSPPPHLRMKNKVSSLTEYYAHKD------- 251
                   + +          ++     S       L   ++ +++++    ++       
Sbjct: 403  QEAQIMAILDAAPAMIWTAHDRECRSISGNRAARELSRVDETANMSKTGPEREHLAHYSI 462

Query: 252  --DVLKTEKYPL-----LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
              D  +     L      ++         +F   +  +Y+       L ++       ++
Sbjct: 463  YKDGRELAPEELPIQVVASTGREFRDYSLEFVLKDGPRYSLLGNVIPLIDSEGSPSGAIA 522

Query: 305  HRNHPSLSAYFDEGENLTPE----------------------TVDKCPIPFFVYSHGNLF 342
                 +     +E    + +                       ++  P+   + +     
Sbjct: 523  AFMDITERKLMEEELRKSRDELEIRVRERTEELAAERQLFFDVLETLPVYVCLLTPEYHV 582

Query: 343  -YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401
             +AN  F            +       L    +  +      V+            +  H
Sbjct: 583  PFANKVFRDRFGAS-----KGLRCFEHLFGRSEPCEICDTYAVLKT----------STPH 627

Query: 402  TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
              +W   +  + +   F   +     +    +  +  + +  +  ++ E  +L  +LE  
Sbjct: 628  RWEWEGPDGRSYSVFDFPFIDAKGSQL-ILEMGIDVTERKQAEEALKTERQRLFDVLETL 686

Query: 462  SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
               I ++  +  +  +NR+  + FG    +   +    +               +     
Sbjct: 687  PVMICLLTPDHHVAFSNRSFREKFG----ESQGRHCYEYRFGLNEPCNFCESYRVAETGR 742

Query: 522  RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH-DISEWKQEKNKLSHAKKIAEK 580
                E        +  ++            S   L M  DI+E+++ + +L       E+
Sbjct: 743  SHHWEVTV----PDGTIIDAHDFPFIDVDGSPMILEMDFDITEFREAERELKATVAKLEQ 798

Query: 581  ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
             +    +F    SH+++ PL  I  F E++  ++   L +         I +  N + ++
Sbjct: 799  LNQELQEFAFIASHDLQEPLRKIQTFGEMLVRRKKDSL-DAEGKNLLERIIKGANRMAEL 857

Query: 641  VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILAD 700
            ++ L   S+  SG   L  +PVSL E    A S ++ + ++    +      ++P + AD
Sbjct: 858  LHALRTYSR--SGTSQLIHKPVSLSEVARGAASALEYWISKTNAKVEI---GDLPTVDAD 912

Query: 701  LRSVKQIALNILSNAIHFTPSGG--QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
               + Q+  N++SN+I +        I IS +   + +  + V+D G+G      ++  K
Sbjct: 913  ESLLHQLFQNLISNSIKYRKESEPPVIKISGSVIDH-QCRISVQDNGIGFDPCYSDQIFK 971

Query: 759  PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
            PF ++         GTG+GL + + +V  + G+  + S P +G+  ++  PL   
Sbjct: 972  PFQRLHGKDSP-YSGTGMGLTICRKIVARHNGEITVESEPGRGSTFKVTLPLKQQ 1025



 Score =  130 bits (327), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 38/322 (11%), Positives = 98/322 (30%), Gaps = 14/322 (4%)

Query: 284 TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY-SHGNLF 342
             +  +       K   +          +    + E    E V         + S G + 
Sbjct: 106 LAEAAYRAQARAFKTEQQSRLSAEREKAAVELQQSERKYRELVQNANSAIVRWNSGGTIA 165

Query: 343 YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT 402
           + N        Y+  + +     +S LL   + +  +    + L          S     
Sbjct: 166 FFNEYAQTFFGYREDEILGK--HVSVLLPETESAGTD-STALALDVVRYPERYVSIINEN 222

Query: 403 IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
           I+ +               ++         +  +    R  + K++       +IL+   
Sbjct: 223 IRRDGSRVWMAWTHKAI-FDESGAVSEILAVGTDITARRQAEEKLKHASEFATAILDTVD 281

Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT-VFLEQNTPSVMNHYLTEILSLDL 521
             I +++R G I+  N A  +L G+ V++++ + F    + +     +      + +   
Sbjct: 282 GLIIVLDRNGRIVRFNAACERLTGWRVDEVIGRCFWEFLVPEEQRRGVLQVFQGLTTGKF 341

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAE 579
               E   +      + ++                  T  DI+E ++ +  L  ++++A 
Sbjct: 342 PSRHENEWILRDGSRRWITWANSCLLDAKGDIVHVIGTGIDITERQRAEQALRESERLAR 401

Query: 580 KESSHKSDFL----ARV--SHE 595
            + +     L    A +  +H+
Sbjct: 402 DQEAQIMAILDAAPAMIWTAHD 423



 Score =  125 bits (313), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 44/531 (8%), Positives = 118/531 (22%), Gaps = 56/531 (10%)

Query: 93  GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK----RQNTWYGKTT 148
           G +   +E      G    +++G  +  +         +     L      +        
Sbjct: 162 GTIAFFNEYAQTFFGYREDEILGKHVSVLLPETESAGTDSTALALDVVRYPERYVSIINE 221

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +G+   V +      I+  +   S     G               K   +  + + 
Sbjct: 222 NIRRDGS--RVWMAWTHKAIFDESGAVSEILAVGT--DITARRQAEEKLKHASEFATAIL 277

Query: 209 EIKKGHSSVEKEKYDIFSQQSP---PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
           +   G   V      I    +        R+   +      +   ++  +          
Sbjct: 278 DTVDGLIIVLDRNGRIVRFNAACERLTGWRVDEVIGRCFWEFLVPEEQRRGVLQVFQGLT 337

Query: 266 ESSLPEQEDFHTI--NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
               P + +   I  + ++         L +   +    +      +     ++    + 
Sbjct: 338 TGKFPSRHENEWILRDGSRRWITWANSCLLDAKGDIVHVIGTGIDITERQRAEQALRESE 397

Query: 324 -----------ETVDKCPIPFF--VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
                        +D  P   +            N +   L++     ++   G     L
Sbjct: 398 RLARDQEAQIMAILDAAPAMIWTAHDRECRSISGNRAARELSRVDETANMSKTGPEREHL 457

Query: 371 DA---PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
                 K     A + + +     T                   ++        +     
Sbjct: 458 AHYSIYKDGRELAPEELPIQVVASTGREFRDYSLEFVLKDGPRYSLLGNVIPLIDSEGSP 517

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLC------------------SILEATSDGIAIIN 469
                   +  + ++ + ++     +L                    +LE     + ++ 
Sbjct: 518 SGAIAAFMDITERKLMEEELRKSRDELEIRVRERTEELAAERQLFFDVLETLPVYVCLLT 577

Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
            E  +   N+     FG              L   +          +L        E   
Sbjct: 578 PEYHVPFANKVFRDRFGAS----KGLRCFEHLFGRSEPCEICDTYAVLKTSTPHRWEWE- 632

Query: 530 LGSTKEEKLLSLRIII-KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579
                + +  S+          S        D++E KQ +  L   ++   
Sbjct: 633 ---GPDGRSYSVFDFPFIDAKGSQLILEMGIDVTERKQAEEALKTERQRLF 680



 Score =  121 bits (303), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 54/460 (11%), Positives = 123/460 (26%), Gaps = 41/460 (8%)

Query: 163 LAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKY 222
           LA     ++ R F   +      ++          ++ ++K+  L +             
Sbjct: 106 LAEAAYRAQARAFKTEQQ---SRLSAEREKAAVELQQSERKYRELVQNANSAIVRWNSGG 162

Query: 223 DIFSQQS---PPPHLRMKN----KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDF 275
            I             R        VS L                 ++   E  +    + 
Sbjct: 163 TIAFFNEYAQTFFGYREDEILGKHVSVLLPETESAGTDSTALALDVVRYPERYVSIINEN 222

Query: 276 HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE----TVDKC-P 330
              + ++         + + S    E L+     +     +E      E     +D    
Sbjct: 223 IRRDGSRVWMAWTHKAIFDESGAVSEILAVGTDITARRQAEEKLKHASEFATAILDTVDG 282

Query: 331 IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390
           +   +  +G +   N +   LT ++  + I         L   +           L    
Sbjct: 283 LIIVLDRNGRIVRFNAACERLTGWRVDEVIGRCFW--EFLVPEEQRRGVLQVFQGLTT-- 338

Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI- 449
                +      I  +               +   + +   G   +  + +  ++ +   
Sbjct: 339 -GKFPSRHENEWILRDGSRRWITWANSCLL-DAKGDIVHVIGTGIDITERQRAEQALRES 396

Query: 450 ------EVMQLCSILEATSDGIAI-INREGIILSTNRAVSKLFGYPVEDILRKP------ 496
                 +  Q+ +IL+A    I    +RE   +S NRA  +L        + K       
Sbjct: 397 ERLARDQEAQIMAILDAAPAMIWTAHDRECRSISGNRAARELSRVDETANMSKTGPEREH 456

Query: 497 --FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-- 552
                  +            ++++   R+  +       K+    SL   +  L  S   
Sbjct: 457 LAHYSIYKDGRELAPEELPIQVVASTGREFRDYSLEFVLKDGPRYSLLGNVIPLIDSEGS 516

Query: 553 --CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
                    DI+E K  + +L  ++   E     +++ LA
Sbjct: 517 PSGAIAAFMDITERKLMEEELRKSRDELEIRVRERTEELA 556



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/260 (13%), Positives = 73/260 (28%), Gaps = 10/260 (3%)

Query: 328 KCPI--PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
             P+      +          +F       +V  +    G      A  +S   A    +
Sbjct: 19  LLPVIAAVIRWHFLETLGFRATFTTFYPAVAVAALYGRFGAG--FIATAVSALLADYFWI 76

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
                      + RL    +   N   ++ +                      +      
Sbjct: 77  EPVGQFAIAPFADRLSVAVFL-ANGTLISCLAEAAYRAQARAFKTEQQSRLSAEREKAAV 135

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           +++    +   +++  +  I   N  G I   N      FGY  ++IL K  +V L +  
Sbjct: 136 ELQQSERKYRELVQNANSAIVRWNSGGTIAFFNEYAQTFFGYREDEILGKHVSVLLPETE 195

Query: 506 PSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHD 560
            +  +     +  +   +    I      ++   + +    K +   S           D
Sbjct: 196 SAGTDSTALALDVVRYPERYVSIINENIRRDGSRVWMAWTHKAIFDESGAVSEILAVGTD 255

Query: 561 ISEWKQEKNKLSHAKKIAEK 580
           I+  +Q + KL HA + A  
Sbjct: 256 ITARRQAEEKLKHASEFATA 275


>gi|308069542|ref|YP_003871147.1| signal transduction histidine kinase [Paenibacillus polymyxa E681]
 gi|305858821|gb|ADM70609.1| Signal transduction histidine kinase [Paenibacillus polymyxa E681]
          Length = 480

 Score =  325 bits (832), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 82/380 (21%), Positives = 155/380 (40%), Gaps = 25/380 (6%)

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
            +     R +  E   L S+L + SD +   +R G I+ TN     L     +   ++  
Sbjct: 115 TELEATIRSLNEEKNHLSSVLRSMSDAVITFDRSGQIILTNPPAQSLLDIWKKLEWQERD 174

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT 557
                 + P  +      ++                K+         +            
Sbjct: 175 LEEFGASVPEPLLSLFHTVMDRGEDVGDYIHV----KKGSWSVQMAPLYTDNAIRGAVAV 230

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
           + DI+E  + +                +SDF+A VSHEIRTPL+ + G+SE + +   G 
Sbjct: 231 LRDITEEVKLE--------------KMRSDFVANVSHEIRTPLSMMQGYSEALLDGMAG- 275

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
                  E    I      +  +V DLLD++++E+G  ++H + V ++E +        +
Sbjct: 276 -SPEESEELVQVIHDESLRMGRLVKDLLDLARMEAGHTDMHRQEVDVNELIERVHRKFTV 334

Query: 678 YANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTH---TS 733
            + E+ + +          +  AD   ++Q+  N+L NA   TP G ++ I+        
Sbjct: 335 RSKEQGLTLDYHEQGQRLLLPEADEDRLEQVLTNLLDNAFRHTPGGKKVTIAADRILGER 394

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGEGTGLGLPLAKAMVDANMGKF 792
           +E + +R++D GVG+ + +L      F +   ++     +GTGLGL + K +V+A+ G  
Sbjct: 395 HELIRIRIKDEGVGIASEDLPYIFDRFYKADKARVRGEDKGTGLGLAIVKNIVEAHGGSV 454

Query: 793 YIFSTPAKGTLIEIIFPLYD 812
              S   +GT   I+ P+ +
Sbjct: 455 SAASVLGEGTEFTILLPISN 474


>gi|149277505|ref|ZP_01883646.1| GAF sensor hybrid histidine kinase [Pedobacter sp. BAL39]
 gi|149231738|gb|EDM37116.1| GAF sensor hybrid histidine kinase [Pedobacter sp. BAL39]
          Length = 938

 Score =  325 bits (832), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 114/579 (19%), Positives = 218/579 (37%), Gaps = 28/579 (4%)

Query: 242 SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301
           S  +     D    T +   L    ++      F T   +    +        +S     
Sbjct: 212 SFLDMSHPDDLEANTAELKKLGDGHTTQNFTVRFLTAKGDYRALQWTATPEPGSSSIFGI 271

Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDI 360
                            EN      D        +   G     N +   +  Y   +  
Sbjct: 272 ARDVTEENLRDEQLKASENNLRSFFDNSQGLMCTHDPEGKFISVNNTASEILGYTPEEL- 330

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
                  +L+    L  +     V+ Y  D      ++ L TI         + +    +
Sbjct: 331 -------SLMSLYDLIPSGHHPMVVSYLKDIIENGIASGLMTILHKDGTDRVLLYKNVVE 383

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
            +   +     G   +  +    ++ ++     L         G    +     ++ +  
Sbjct: 384 RDLQGQP-YIIGNSIDITEKHRLEQTLKKTKKLLEQTNYVAQIGGWDYDPVSREVTWSDV 442

Query: 481 VSKLFGYPVEDILRK--PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
              +     + I  K    + + ++     +     + +S      L    +  T + + 
Sbjct: 443 TRAIHEVGPDFIPNKENTVSFYRDEAHRVQIVQAFRDAISEGKSWDL--ELVIVTAKGRQ 500

Query: 539 LSLRIIIKKLPFSSC---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
           + ++++               T  +I E  +++ +L  AK++AE+ S  KS+FLA +SHE
Sbjct: 501 MWVKVLGNAEFKDGKCRKIYGTFQNIHEHTKQRTELKKAKELAEQASMAKSEFLANMSHE 560

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           IRTPL  +IGF++++   +  P+      +Y    + S N +L I+ND+LD SKIESGK+
Sbjct: 561 IRTPLNGVIGFTDLVLKTKLSPV----QEQYLRIANESANALLGIINDILDFSKIESGKL 616

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSN 714
            L  E  +L E  ++A++++   A  K + +  S   ++P  I AD   ++Q+ +N+L N
Sbjct: 617 ELDIESCNLYELGNQAVNIITFQAQSKDLKVLFSIPGDLPPYIYADSLRLRQVLINLLGN 676

Query: 715 AIHFTPSGGQIIIS---TTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
           A+ FT  G QI +         +   + R  VRDTG+G+   +  +  + F Q       
Sbjct: 677 AVKFTDHG-QIELKIKFVGVKDSGHFVFRFEVRDTGIGIKLDKQGQIFEAFSQEDGYTTK 735

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           R  GTGLGL ++  ++     K  + S+P KG+      
Sbjct: 736 RYGGTGLGLTISNQLLGLMGSKLQVKSSPGKGSTFYFDL 774



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/238 (15%), Positives = 76/238 (31%), Gaps = 27/238 (11%)

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
              P  K     +      +  E +   + +R+   E +    +   +SD I I   +G 
Sbjct: 131 VLSPDVKCLGDAQRRALTLLSEEAMGLIVTQRE-RQEHIYFDKLYRLSSDMICIAGTDGF 189

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
               N +  ++ G+  E +L   F      +        L ++   D   T        T
Sbjct: 190 FKKVNPSFERILGWSTEYLLNNSFLDMSHPDDLEANTAELKKL--GDGHTTQNFTVRFLT 247

Query: 534 KEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR-- 591
            +    +L+      P SS       D++E      +L  ++      ++ +S F     
Sbjct: 248 AKGDYRALQWTATPEPGSSSIFGIARDVTEENLRDEQLKASE------NNLRS-FFDNSQ 300

Query: 592 ---VSHE-------IRTPLTAIIGFS-EVI----KNQRFGPLGNPRYIEYANYIDRSG 634
               +H+       +    + I+G++ E +             +P  + Y   I  +G
Sbjct: 301 GLMCTHDPEGKFISVNNTASEILGYTPEELSLMSLYDLIPSGHHPMVVSYLKDIIENG 358



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/437 (9%), Positives = 105/437 (24%), Gaps = 41/437 (9%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151
            G+ K+++    + +G     ++     D+S    ++ N      L   +T    T  + 
Sbjct: 187 DGFFKKVNPSFERILGWSTEYLLNNSFLDMSHPDDLEANTAELKKLGDGHTTQNFTVRFL 246

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
               +    +   A P      E      FGI      +N      K  +       +  
Sbjct: 247 TAKGDYRA-LQWTATP------EPGSSSIFGIARDVTEENLRDEQLKASENNLRSFFDNS 299

Query: 212 KGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
           +G       +    S  +    +      ++S ++ Y              L    E+ +
Sbjct: 300 QGLMCTHDPEGKFISVNNTASEILGYTPEELSLMSLYDLIPSGHHPMVVSYLKDIIENGI 359

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK- 328
                             Y   ++ + +     + +    +     ++    T + +++ 
Sbjct: 360 ASGLMTILHKDGTDRVLLYKNVVERDLQGQPYIIGNSIDITEKHRLEQTLKKTKKLLEQT 419

Query: 329 ---CPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
                I  + Y         +     + +     D       +      +      ++  
Sbjct: 420 NYVAQIGGWDYDPVSREVTWSDVTRAIHEVGP--DFIPNKENTVSFYRDEAHRVQIVQAF 477

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF-----PENMPQNGIEPEDVD 439
               S+         L  +               E  +             +    +  +
Sbjct: 478 RDAISEGKSWDLE--LVIVTAKGRQMWVKVLGNAEFKDGKCRKIYGTFQNIHEHTKQRTE 535

Query: 440 TRINKRKMEIEVMQLCSILEATS-------DGIAIIN-----------REGIILSTNRAV 481
            +  K   E   M     L   S       +G+               +E  +   N + 
Sbjct: 536 LKKAKELAEQASMAKSEFLANMSHEIRTPLNGVIGFTDLVLKTKLSPVQEQYLRIANESA 595

Query: 482 SKLFGYPVEDILRKPFT 498
           + L G   + +      
Sbjct: 596 NALLGIINDILDFSKIE 612



 Score = 42.7 bits (99), Expect = 0.25,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 29/71 (40%), Gaps = 2/71 (2%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL-HIDPNNHIGDLLKRQNTWYGKTT 148
           D  G    ++    + +G    ++  M L D+     H    +++ D+++      G  T
Sbjct: 307 DPEGKFISVNNTASEILGYTPEELSLMSLYDLIPSGHHPMVVSYLKDIIENGIA-SGLMT 365

Query: 149 LWPIEGTNLYV 159
           +   +GT+  +
Sbjct: 366 ILHKDGTDRVL 376


>gi|297537736|ref|YP_003673505.1| multi-sensor signal transduction histidine kinase [Methylotenera
           sp. 301]
 gi|297257083|gb|ADI28928.1| multi-sensor signal transduction histidine kinase [Methylotenera
           sp. 301]
          Length = 975

 Score =  325 bits (832), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 106/499 (21%), Positives = 200/499 (40%), Gaps = 14/499 (2%)

Query: 323 PETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
           P    + P  F   S   +  AN      +  +          +  +LD     + N I 
Sbjct: 471 PLLAKELPEYFQFISQNRVLAANDVIAHPSTVEFRQGYAQENNIGAILDGSIWLNGNMIG 530

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
            V    +  +       L    +       +         +  E       E  +V    
Sbjct: 531 AVCCEHTTDSR---EWTLDEQGFVGSICDVVRLTIETDRRRSAEQALLQHSEELEVMVEA 587

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
               ++    +L S+++     I  I  +G I+  N    ++ G+   + + K F     
Sbjct: 588 RTLSLQESEQRLTSVIKYAPIPILTIKMDGEIIEFNPEAERVTGFSRSEAIGKNFIDIFV 647

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK-----LPFSSCYSLT 557
                     +  I +           +    + + +     I K     +         
Sbjct: 648 VKESFKKAIGI-GIGTKRGEAFRNVELIFKCADGRKIEFECSIVKAGKNGVSDVGQMIAI 706

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
             DI++ K  +  L  A++ AE     KS F+A +SHE+RTPL +IIGF  V+     G 
Sbjct: 707 GQDITQKKVLQASLIKARESAESADRIKSMFVASMSHELRTPLNSIIGFLGVVLQGMSGD 766

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
           L N +  +       S   +L +++D++DISKIE+G + +H E  +L    +E ++++  
Sbjct: 767 L-NTKQKDQLGRAYHSAKHLLSLISDVIDISKIEAGFLEIHTESFALKPMFNEVVNVIHH 825

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737
            A+ K + ++   + +I  +  D + + Q  LN++SNA+ +T +G  + +      NEE+
Sbjct: 826 IADGKHLNLQIDCSEDII-LETDRKRLYQAILNVVSNAVKYTEAGS-VTVEAKII-NEEL 882

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV-DANMGKFYIFS 796
           I+  +DTG+G++   LE+  KPF +  +  +I+  GTGLGL L + ++     G   + S
Sbjct: 883 IITTQDTGIGISPSGLEQLFKPFERAESHLKIKTLGTGLGLYLTRKILTQLLGGSIEVES 942

Query: 797 TPAKGTLIEIIFPLYDTSH 815
               G+   I  P+  +  
Sbjct: 943 QVGVGSTFTIRVPVKISEQ 961


>gi|218709148|ref|YP_002416769.1| sensory box histidine kinase/response regulator [Vibrio splendidus
            LGP32]
 gi|218322167|emb|CAV18281.1| sensory box histidine kinase/response regulator [Vibrio splendidus
            LGP32]
          Length = 1430

 Score =  325 bits (832), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 103/526 (19%), Positives = 192/526 (36%), Gaps = 48/526 (9%)

Query: 307  NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGG 365
            +     +            +D  P P  V +    +   N +   LT ++ ++   +   
Sbjct: 537  DRKRTESALKHQVEFERSLLDAMPFPIVVRNLDNQIISLNSAAQQLTGFELIEGAIVNNS 596

Query: 366  LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
                +    +      K V                           A    P+       
Sbjct: 597  DEDTMIHHGVVLPRLEKEVA------------------SPQGSKHYAYWKCPYISNGNIE 638

Query: 426  ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA--------IINREGIILST 477
             ++       E  + +   +  +  V +L          +         + + E   +  
Sbjct: 639  GSVTILDDLTELYEAKKIAKSADDRVQKLA---NNLHGAVIQHIQPKRSLHDIE--FVFI 693

Query: 478  NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEE 536
            +  V +L G     +  +    F            +  + S +    L     +    ++
Sbjct: 694  SDGVEELLGLTPAQL-HRSPNSFFAPLNAQDRRTLIKRVRSGNKEGKLSLDIGVNIDNQK 752

Query: 537  KLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
            + L+L+  I  L     +   + DI+E KQ++ +L+ A++ A   +  KS FLA +SHEI
Sbjct: 753  RWLNLQSKISDLGEYYEWDSVLTDITELKQQQEELTQARQSAIAATEAKSRFLANMSHEI 812

Query: 597  RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
            RTPL  I+   E+ +    G        +    + +S N +L IVND+LD SKIE+GK+ 
Sbjct: 813  RTPLGGIVSLLELSEQYEVGY----EVQKIHTTLSQSANNLLHIVNDILDFSKIEAGKLT 868

Query: 657  LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNA 715
            L ++P SLD        L    A+ K +  +      +   +L D   + Q+  N+LSNA
Sbjct: 869  LDYQPASLDTLTLRVTQLQARQAHAKGLQFKFWLDPELNDLVLMDDIRIGQVLNNLLSNA 928

Query: 716  IHFTPSGGQIIISTTHT------SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
            I FT  G    +             +++   V D+G+G++   +    +PF Q       
Sbjct: 929  IKFTEYG---TVGLAAKLLDLDGEQQQICFEVFDSGIGISEEHIRNLFQPFVQADEGTTR 985

Query: 770  RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            +  G+GLGL ++K +++   G   + S    G+   I  PL   + 
Sbjct: 986  KYGGSGLGLTISKQLIEQMGGSLNVTSKINIGSTFSITLPLKTLAE 1031



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 46/135 (34%), Gaps = 12/135 (8%)

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
           +  E  D +  +  ++ +V    S+L+A    I + N +  I+S N A  +L G+ + + 
Sbjct: 531 LRREVEDRKRTESALKHQVEFERSLLDAMPFPIVVRNLDNQIISLNSAAQQLTGFELIE- 589

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
                   +  +    M H+        +   LEK        +     +          
Sbjct: 590 -----GAIVNNSDEDTMIHH------GVVLPRLEKEVASPQGSKHYAYWKCPYISNGNIE 638

Query: 553 CYSLTMHDISEWKQE 567
                + D++E  + 
Sbjct: 639 GSVTILDDLTELYEA 653


>gi|239907937|ref|YP_002954678.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239797803|dbj|BAH76792.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 735

 Score =  325 bits (832), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 101/505 (20%), Positives = 178/505 (35%), Gaps = 24/505 (4%)

Query: 318 GENLTPETVDKCPIPFFVYSHG--NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
            +      +       FV       +  A+ +      +     I       TL     +
Sbjct: 77  SDGGMRFLLKNSSDIIFVVDPDFERIVQASRAACEFLGFSHGHIIGK-----TLSVLHPV 131

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
            ++   + V           A     ++   R + L  +         +        I  
Sbjct: 132 EEHAVCREVFRACVTAAEAGAPGHSPSMTLVRRDGLRASCRMAVTMLGWGVRRLACCIYS 191

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI--L 493
                 I    ++         L    DG    N     +  +R   +L GY   DI   
Sbjct: 192 SPALRGIVGSGLQESEAYFAQALPHIDDGAWSWNPVTDEIFLSRQWLRLLGYEPGDIPTT 251

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553
            +     L  +    +   L   +    R +         K+     L      +  ++ 
Sbjct: 252 SEDCNALLHPDDRDRVLGLLAACVR-GERTSFSMEYRLLAKDGSYRWLHGRGAPVRDTAG 310

Query: 554 YSLTMH----DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
               +     DI+  K+ +  L+ A+  A   S  KS FLA +SHEIRTP+  I+G +E+
Sbjct: 311 RLTLLTGATTDITRRKETELALAQARDAAMAASRAKSAFLASMSHEIRTPMNVILGMAEL 370

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           +               Y   I  SG ++  +++D+LD S+IE+ ++ L  E         
Sbjct: 371 LAETSISS----SQRRYLEGIAGSGRMLSQLLSDILDFSQIEADRVALFPEVFDPAALAR 426

Query: 670 EAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
           E   L    A  K + ++     ++P  ++AD   V+Q+ LN++ NA+ +T SG +I +S
Sbjct: 427 EVCGLAGEAAAGKGLDLQVHTDPSLPDRLVADPLRVRQVLLNLVWNAVKYTQSG-RITVS 485

Query: 729 TTH----TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
            T          V+  VRD+G G+    + +   PF Q   +   R  G GLGL +++A+
Sbjct: 486 ATPLSDPAGQGFVLFSVRDSGPGIAPEAMARIFDPFSQADAAAHRRQGGAGLGLSISRAL 545

Query: 785 VDANMGKFYIFSTPAKGTLIEIIFP 809
                G     S P  G+      P
Sbjct: 546 ARLMGGDVVAESAPGAGSCFSFTLP 570



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/347 (8%), Positives = 72/347 (20%), Gaps = 29/347 (8%)

Query: 96  KEISEELPKTIGNYAFKM--IGMRLCDVSDILHIDPNNHIGDLLKRQN--TWYGKTTLWP 151
             +S +  + +G     +         +      D    +     R    ++  +  L  
Sbjct: 231 IFLSRQWLRLLGYEPGDIPTTSEDCNALLHPDDRDRVLGLLAACVRGERTSFSMEYRLLA 290

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
            +G+  Y  +     P+       +   G           +      +           K
Sbjct: 291 KDGS--YRWLHGRGAPVRDTAGRLTLLTG--ATTDITRRKETELALAQARDAAMAASRAK 346

Query: 212 KGHSSVEKEKYD-----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
               +    +       I           + +      E  A    +L      +L   +
Sbjct: 347 SAFLASMSHEIRTPMNVILGMAELLAETSISSSQRRYLEGIAGSGRMLSQLLSDILDFSQ 406

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
                   F  +       ++  G     +      L     PSL            + +
Sbjct: 407 IEADRVALFPEVFDPAALAREVCGLAGEAAAGKGLDLQVHTDPSLPDRLVADPLRVRQVL 466

Query: 327 DKCPI-PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
                        G +              S   +    G   +L + + S        M
Sbjct: 467 LNLVWNAVKYTQSGRITV------------SATPLSDPAGQGFVLFSVRDSGPGIAPEAM 514

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
               D       A     +      L ++           + + ++ 
Sbjct: 515 ARIFDPFS---QADAAAHRRQGGAGLGLSISRALARLMGGDVVAESA 558



 Score = 46.6 bits (109), Expect = 0.017,   Method: Composition-based stats.
 Identities = 33/396 (8%), Positives = 85/396 (21%), Gaps = 33/396 (8%)

Query: 86  TWNIDAHG-YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL----KRQ 140
            + +D     + + S    + +G     +IG  L  +  +        +        +  
Sbjct: 92  IFVVDPDFERIVQASRAACEFLGFSHGHIIGKTLSVLHPVEEHAVCREVFRACVTAAEAG 151

Query: 141 NT-WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA---- 195
                   TL   +G             + +  R      G+G+  +        A    
Sbjct: 152 APGHSPSMTLVRRDG-------------LRASCRMAVTMLGWGVRRLACCIYSSPALRGI 198

Query: 196 ----LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY---- 247
               L +        L  I  G  S      +IF  +     L  +      T       
Sbjct: 199 VGSGLQESEAYFAQALPHIDDGAWSWNPVTDEIFLSRQWLRLLGYEPGDIPTTSEDCNAL 258

Query: 248 --AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
                 D +       +  E +S   +      + +          +++ +         
Sbjct: 259 LHPDDRDRVLGLLAACVRGERTSFSMEYRLLAKDGSYRWLHGRGAPVRDTAGRLTLLTGA 318

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365
               +     +       +           +             ++     +        
Sbjct: 319 TTDITRRKETELALAQARDAAMAASRAKSAFLASMSHEIRTPMNVILGMAELLAETSISS 378

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
                          +  ++    D + I A       +     +LA             
Sbjct: 379 SQRRYLEGIAGSGRMLSQLLSDILDFSQIEADRVALFPEVFDPAALAREVCGLAGEAAAG 438

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
           + +         +  R+    + +  + L  +  A 
Sbjct: 439 KGLDLQVHTDPSLPDRLVADPLRVRQVLLNLVWNAV 474


>gi|229524361|ref|ZP_04413766.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae
           bv. albensis VL426]
 gi|229337942|gb|EEO02959.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae
           bv. albensis VL426]
          Length = 785

 Score =  325 bits (832), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 89/399 (22%), Positives = 169/399 (42%), Gaps = 23/399 (5%)

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
            +E E       + ++      L S ++A+ D I   N +G     NRA+ +L G    +
Sbjct: 135 DLENEVYQREKTQVELAERTALLRSFIDASPDLIYYRNAKGEFSGCNRAMEELTGKRESE 194

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
           ++         +     +     ++ + +   T E+        +    LR +       
Sbjct: 195 LVGLTPWDVYRKEIAQSIVETDQQVFNNNTAITYEQWLEYPDGRKSFFELRKVPFYNKDG 254

Query: 552 S--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                     DI+E K+ +  L       EK S  K+ F++ +SHE+RTPL  I+G S +
Sbjct: 255 RHLGLVGFGRDITERKRHEESL-------EKASRDKTTFISTISHELRTPLNGIVGLSRM 307

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           + +            ++   I+ S   + +I ND++D+ K +  K+ L    ++ +E V+
Sbjct: 308 LLDTPLSS----EQRKHLQTINVSAVTLGNIFNDIIDMDKFDRRKLELFPAALNFEEFVA 363

Query: 670 EAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI-II 727
           E   L  L A +K +        ++P  +  D   ++Q+  N+LSNA+ FT  GG +  +
Sbjct: 364 EIEVLAALMAEQKGLRFDLERLTDLPSLVEVDSTRLRQVLWNLLSNAMKFTKEGGVVMTV 423

Query: 728 STTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGEGTGLGLPLAKAMV 785
           S    +   E+ + V DTG+G+   E EK    + Q+ + +      GTG+GL +++ ++
Sbjct: 424 SAECDAQHAEITIEVEDTGIGIPEAEQEKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLI 483

Query: 786 DANMGKFYIFSTPAKGTLIEIIF--PLYDTS----HPHD 818
               G   + S    G+   +    PL   +     PH+
Sbjct: 484 KLMGGDISVNSEEGFGSTFTVTIRVPLLAEAPIEIEPHE 522



 Score = 45.4 bits (106), Expect = 0.040,   Method: Composition-based stats.
 Identities = 33/240 (13%), Positives = 60/240 (25%), Gaps = 18/240 (7%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           +A G     +  + +  G    +++G+   DV               +   NT       
Sbjct: 172 NAKGEFSGCNRAMEELTGKRESELVGLTPWDVYRKEIAQSIVETDQQVFNNNTAITYE-Q 230

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
           W           +L  +P Y+++    G  GFG               ++  +  +    
Sbjct: 231 WLEYPDGRKSFFELRKVPFYNKDGRHLGLVGFG--RDITERKRHEESLEKASRDKTTFIS 288

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY--------------AHKDDVLK 255
                           S+      L  + +    T                   K D  K
Sbjct: 289 TISHELRTPLNGIVGLSRMLLDTPLSSEQRKHLQTINVSAVTLGNIFNDIIDMDKFDRRK 348

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
            E +P   + E  + E E    +   Q   +     L +      E  S R    L    
Sbjct: 349 LELFPAALNFEEFVAEIEVLAALMAEQKGLRFDLERLTDL-PSLVEVDSTRLRQVLWNLL 407


>gi|295707318|ref|YP_003600393.1| two-component sensor histidine kinase WalK [Bacillus megaterium DSM
           319]
 gi|294804977|gb|ADF42043.1| two-component sensor histidine kinase WalK [Bacillus megaterium DSM
           319]
          Length = 635

 Score =  325 bits (832), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 88/391 (22%), Positives = 170/391 (43%), Gaps = 33/391 (8%)

Query: 426 ENMPQNGIEPEDVDTRINKRKM--EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           + + Q  +   ++  ++ + +   E E  +L S+L   +DG+   +R+G ++  N   + 
Sbjct: 263 DEIGQLALTFNNLTRKLQEAQATTEGERRKLSSVLAHMTDGVIATDRKGRVILINDPAAA 322

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +     E +L  P    L+          L    S         I   STK +  + LR 
Sbjct: 323 MLNVSRETVLSDPVVSLLDLEETHTFESLLANQES--------LILDFSTKSDPFI-LRA 373

Query: 544 IIKKLPFS----SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
            I  +       +   + +HDI+E ++                  + +F+A VSHE+RTP
Sbjct: 374 TISAIQKETGFINGIIIVLHDITEQEKIDQD--------------RREFVANVSHELRTP 419

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           LT +  + + +    +          + N        ++ +VNDLL +SK++S       
Sbjct: 420 LTTMRSYLDALAEGAWQ--DKDLAPTFLNVTQTETERMIRLVNDLLQLSKLDSQDYRFSR 477

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719
           +P++  +     I   ++   +  I       N    +  D   + Q+  NI+SNAI ++
Sbjct: 478 DPINFVKFYHYIIDRFEMTIEQ-GISFVRDLPNEAIYVAIDQDKITQVLDNIISNAIKYS 536

Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
           P GG I  S    ++ E+++ ++D G+G+    L K  + F ++  ++  +  GTGLGL 
Sbjct: 537 PEGGIITFSIAQHTH-EIVVSIKDQGMGIPKSNLAKIFERFYRVDKARTRKLGGTGLGLA 595

Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           +AK +++A+ G+ +  S   KGT I    P+
Sbjct: 596 IAKEIIEAHDGRIWADSQEGKGTTIYFTLPI 626


>gi|239908525|ref|YP_002955267.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239798392|dbj|BAH77381.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 669

 Score =  325 bits (832), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 110/528 (20%), Positives = 211/528 (39%), Gaps = 43/528 (8%)

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEI 362
           +       +A  D+        +        F+   G +   N  +L        + +  
Sbjct: 26  ARPVRAGQNATSDKRLARLTSIIAALDQAIAFIAPSGVIAEINDRYLTWLGRSRAEVLGA 85

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
              L  L    +     A   +         ++  +R+          + +   P     
Sbjct: 86  R--LEVLDLDTEDYQAAAFLDLFRRGVAHAPVSFESRI------GARDVTVKLQPVI--- 134

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
           +            +       +  +E E   L  ++      I I+NR+ ++++ N   +
Sbjct: 135 EDGMFAGLIVSLIDVTPLVEARLGVEREKRFLEQVITIAGAAICIVNRDDVVVTINDEFT 194

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
            + GY  +  L +P    L ++  S          +       ++ +  + +  K L++ 
Sbjct: 195 AITGYTRDQALGRPRVQLLRESPLSPC------STAPGDGAVQKRQSTIAARGGKRLTIL 248

Query: 543 IIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
                +  +         +  D+S+  + + +       AE+ S  KS FLA +SHEIRT
Sbjct: 249 KNAAPILGADGQITGGIESFVDVSDLIRAQVQ-------AEEASRMKSAFLANMSHEIRT 301

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
           PL AI+G S+++      P    +  E    +  +G  +L I+ND+LD S+IE G++ + 
Sbjct: 302 PLNAIMGLSQLLLRANLPP----QQRECVETMRAAGEGLLVILNDILDFSRIEMGRLEIR 357

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIH 717
             P+ +D  + E   ++   A+++ + +      ++PR+ L D   +KQI LN+LSNAI 
Sbjct: 358 PAPMDIDRLLEEVRRVMAQAADQQGLTLAIERDPSLPRVVLCDPVRLKQILLNLLSNAIK 417

Query: 718 FTPSGGQIIISTT-------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           FTPSG ++ +S         H     V   V DTG G+T    E+  +PF Q  ++    
Sbjct: 418 FTPSG-RVTLSARRATANLGHEGPPRVTFAVHDTGPGITPEVRERIFEPFVQTDDAVARN 476

Query: 771 GEGTGLGLPLAKAMVDANMGK-FYIFSTPAKGTLIEIIFPLYDTSHPH 817
             GTGLGL ++  +V+   G    + ++P +G++      L +    H
Sbjct: 477 PGGTGLGLSISNRLVELLGGSGLELDTSPGRGSVFSFTLALPEPQAAH 524



 Score = 48.9 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 33/348 (9%), Positives = 89/348 (25%), Gaps = 35/348 (10%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP------NNHIGDLLKRQNT 142
           ++    +  I++E     G    + +G     +     + P      +  +         
Sbjct: 180 VNRDDVVVTINDEFTAITGYTRDQALGRPRVQLLRESPLSPCSTAPGDGAVQKRQSTIAA 239

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRG--FGIVHVNRVDNDPRALGK-R 199
             GK            + I   A PI   + + +G       +  + R         + +
Sbjct: 240 RGGK-----------RLTILKNAAPILGADGQITGGIESFVDVSDLIRAQVQAEEASRMK 288

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV-SSLTEYYAHKDDVLKTEK 258
                +  HEI+   +++      +     PP        + ++        +D+L   +
Sbjct: 289 SAFLANMSHEIRTPLNAIMGLSQLLLRANLPPQQRECVETMRAAGEGLLVILNDILDFSR 348

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
             +   E    P   D           ++    +   + +    L+    PSL       
Sbjct: 349 IEMGRLEIRPAPMDID--------RLLEEVRRVMAQAADQQGLTLAIERDPSLPRVVLCD 400

Query: 319 ENLTPE-TVDKCPIPFFVYSHGNLFYANPSFLLLTKYK-----SVDDIEIAGGLSTLLDA 372
                +  ++           G +  +         ++     +    +   G++  +  
Sbjct: 401 PVRLKQILLNLLSNAIKFTPSGRVTLSARRATANLGHEGPPRVTFAVHDTGPGITPEVRE 460

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
                       +      T +  S     ++    + L +   P   
Sbjct: 461 RIFEPFVQTDDAVARNPGGTGLGLSISNRLVELLGGSGLELDTSPGRG 508



 Score = 42.7 bits (99), Expect = 0.25,   Method: Composition-based stats.
 Identities = 47/483 (9%), Positives = 116/483 (24%), Gaps = 62/483 (12%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150
             G + EI++     +G    +++G RL     +L +D  ++        + +       
Sbjct: 60  PSGVIAEINDRYLTWLGRSRAEVLGARLE----VLDLDTEDYQAAAFL--DLFRRGVAHA 113

Query: 151 PI--EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           P+  E       + +   P+   +  F+G     ++ V  +      + +        + 
Sbjct: 114 PVSFESRIGARDVTVKLQPV-IEDGMFAGLI-VSLIDVTPLVEARLGVEREKRFLEQVIT 171

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
                   V ++   +                +          +             + +
Sbjct: 172 IAGAAICIVNRDDVVVTINDEFTAITGYTRDQALGRPRVQLLRE--SPLSPCSTAPGDGA 229

Query: 269 LPEQEDFHTINLNQYT-----KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
           + +++        +            G     +     ++   +        +E   +  
Sbjct: 230 VQKRQSTIAARGGKRLTILKNAAPILGADGQITGGIESFVDVSDLIRAQVQAEEASRMKS 289

Query: 324 ETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
                                  +FL    ++    +    GLS LL    L        
Sbjct: 290 -----------------------AFLANMSHEIRTPLNAIMGLSQLLLRANLPPQQRECV 326

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
             +  +    +     +          L +   P +      E         +       
Sbjct: 327 ETMRAAGEGLLVILNDILDFSRIEMGRLEIRPAPMDIDRLLEEVRRVMAQAAD-----QQ 381

Query: 444 KRKMEIEVM------------QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
              + IE              +L  IL             G +  + R  +   G+    
Sbjct: 382 GLTLAIERDPSLPRVVLCDPVRLKQILLNLLSNAIKFTPSGRVTLSARRATANLGHE--- 438

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
               P   F   +T   +   + E +     QT + +          LS+   + +L   
Sbjct: 439 --GPPRVTFAVHDTGPGITPEVRERIFEPFVQTDDAVARNPGGTGLGLSISNRLVELLGG 496

Query: 552 SCY 554
           S  
Sbjct: 497 SGL 499


>gi|294506364|ref|YP_003570422.1| Sensory histidine protein kinase [Salinibacter ruber M8]
 gi|294342692|emb|CBH23470.1| Sensory histidine protein kinase [Salinibacter ruber M8]
          Length = 1987

 Score =  325 bits (832), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 128/769 (16%), Positives = 257/769 (33%), Gaps = 62/769 (8%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            +D  G L   +  + +  G    ++  M   D+ +           +          +  
Sbjct: 1224 LDEQGDLLFWNRRVNEVTGYTDAELEAMTALDLFEGDDAARIRDAIEESAAGQAVRVEAP 1283

Query: 149  LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
            L   +G    V  +       +  R   G    GI        + R   +R + +F    
Sbjct: 1284 LVTKDGR--RVAHEFVGDAFDAPTR---GRVLCGIGRDVTQQKERRRALRRANHRFDQFA 1338

Query: 209  EIKKGHS-SVEKEKYDIFSQQSPPPHL------RMKNKVSSLTEYYAHKDDVLKTEKYPL 261
            E        V  +  ++    S    L       +++  S+ T +    D          
Sbjct: 1339 ETVPNAFYIVTPDYSELLYANSAAETLYGVDRDTLRDDPSAWTRHVHPADLASLRSNVEA 1398

Query: 262  LTSEESSLPEQEDFH--TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
              + E+  P+ ++F        +   K     + ++              +     ++  
Sbjct: 1399 QGAGEARWPQHQEFRVLHPTRGRRWLKAQIDGMYDDEGTLQRLAGVTTDVTDRKVREQRL 1458

Query: 320  NLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSV-------DDIEIAGGLSTLLDA 372
                               G       +       +         D +  AG + + +  
Sbjct: 1459 RTLYRVTQDLFD--VSTKAGAASIVTDALGDTLGLQEAAVYLRDGDVLVRAGTIDSEVVG 1516

Query: 373  PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL------------AMTFIPFEK 420
                      P+     +    A S           + L             +      +
Sbjct: 1517 SMPRVEQGHTPLWAALDEGDTHAYSDPSTIDDGVDRSGLAGCAYVPVGQRGVLVVGAAAQ 1576

Query: 421  ANQFPENMPQNGIEPEDVDTRI----NKRKMEIEVMQLCSILEATSDG-IAIINREGIIL 475
                 E +       + +   +     +  +     +  ++ E   +G + + +      
Sbjct: 1577 NRLADEELRFLETIAQSLRKALTSLTQEHDLIARERRYRTLAENIPNGAVFLFDGNLAYT 1636

Query: 476  STNRAVSKLFG---YPVEDILRKPFTVFLEQNT--PSVMNHYLTEILSLDLRQTLEKITL 530
                A  +L G       D+L       L         +       L        E+   
Sbjct: 1637 L---AAGELLGTYELGESDLLGAQAGTVLVGIEGGRHPIVDRFEAALEG------ERTDR 1687

Query: 531  GSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
                  + L + ++  +   ++   +   DI+E  +++ +L  AKK AE+ +  KS  LA
Sbjct: 1688 RIGVGGRTLRVHVVPLQGDTNAKGLMLAQDITEDVRKERELMSAKKAAEEANRMKSSLLA 1747

Query: 591  RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR------YIEYANYIDRSGNLVLDIVNDL 644
             +SHEIRTPLT+I+GF+E+I+ +                 E+A  I +SG  ++D +  +
Sbjct: 1748 NMSHEIRTPLTSILGFAEMIEEETGSLEPPAEAGDLKPLGEFAGLIQKSGQRLMDTLTGV 1807

Query: 645  LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704
            L++S++E+G+M+L  EPV L E   E    ++  A  + + ++           AD   +
Sbjct: 1808 LNLSRLEAGEMDLAAEPVDLSEQAREVADELRPRAEAEGLRLQVQAGGEPIWAQADGGGM 1867

Query: 705  KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764
            + +  N++SNAI +T  G +I +   +  N   ++ V D+G+GM   ++E   KPF Q  
Sbjct: 1868 QIVLRNLVSNAIKYTDDG-EIRLRV-YRENGSAMIEVEDSGIGMDPEKIEDLFKPFRQAS 1925

Query: 765  NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
                   EGTGLGL + +  V+   G   + +   KGT I +  P  ++
Sbjct: 1926 EGMAREYEGTGLGLAVTREAVEQMNGSIEVETEKGKGTTIRVQLPKEES 1974



 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 61/506 (12%), Positives = 142/506 (28%), Gaps = 40/506 (7%)

Query: 90   DAH-GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            DA  G + E +      +G    ++IG    D+      +        L R++       
Sbjct: 971  DAETGKIVEANAAATGLLGRPREEIIGAHQTDLHPSGRAEAYAS----LFRRSLDEDGPM 1026

Query: 149  LWPIEGTNLY--------VPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
                +GT +         VP+++ A  +   +        +G+          +    R 
Sbjct: 1027 RALPDGTQIEVVTDEGTTVPVEVNATTVDLPDGRVV----YGVFRDVSERKAMQKRLTRR 1082

Query: 201  DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
            +++F  + E       +  E+     Q +             LT       + L  E+  
Sbjct: 1083 ERRFRMMFEGHSAPMLLIDEETGAIEQANAAAVEFYGYDRDMLTSMSIQDINQLSAEEVA 1142

Query: 261  LLTSEESSLPEQEDFHT--INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
                E +   ++  F     +    T +     + N  +      S  +  +      + 
Sbjct: 1143 RERREAAEDGDEFLFEHELASGEVRTVRVLSAPVPNLDRGGTLLFSVIHDVTQREEHRQD 1202

Query: 319  ENLTPETVDKCPIPF-----FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
                   +D+           +   G+L + N     +T Y   + +E    L       
Sbjct: 1203 LADQKAFLDQVLDTIDDVFYLLDEQGDLLFWNRRVNEVTGYTDAE-LEAMTALDLF---- 1257

Query: 374  KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
            +  D   I+  +   +    +   A L  +  +              A      +   GI
Sbjct: 1258 EGDDAARIRDAIEESAAGQAVRVEAPL--VTKDGRRVAHEFVGDAFDAPTRGRVL--CGI 1313

Query: 434  EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG-IILSTNRAVSKLFGYPVEDI 492
              +    +  +R +     +     E   +   I+  +   +L  N A   L+G   + +
Sbjct: 1314 GRDVTQQKERRRALRRANHRFDQFAETVPNAFYIVTPDYSELLYANSAAETLYGVDRDTL 1373

Query: 493  LRKP--FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
               P  +T  +     + +   +    + + R    +             L+  I  +  
Sbjct: 1374 RDDPSAWTRHVHPADLASLRSNVEAQGAGEARWPQHQEFRVLHPTRGRRWLKAQIDGMYD 1433

Query: 551  SSCYS----LTMHDISEWKQEKNKLS 572
                         D+++ K  + +L 
Sbjct: 1434 DEGTLQRLAGVTTDVTDRKVREQRLR 1459



 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 51/514 (9%), Positives = 134/514 (26%), Gaps = 45/514 (8%)

Query: 97   EISEELPKTIGNYAFKMIGMRLCDVSDILHI-DPNNHIGDLLKRQNTWYGKTTLWPIEGT 155
            +  E L    G+           ++     + D    + ++     +W G   L+  E  
Sbjct: 855  QWDETLQDLFGHDPQTF--EAFTEIVHPNDLPDVEAALENMTSTGESWEGDFWLFHPEEG 912

Query: 156  NLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHS 215
               +   L A P++ +       R  GI        + +       +++  L +      
Sbjct: 913  VARMS--LRATPVHEKGEAV---RVLGIATDVTAQWERQRDLAASRERYQTLLQANPDPV 967

Query: 216  SVEKEKYDIFSQQSPPP---HLRMKNKVSSLTEYYAHKDDVLKT-----EKYPLLTSEES 267
             V   +     + +        R + ++    +   H     +       +         
Sbjct: 968  LVADAETGKIVEANAAATGLLGRPREEIIGAHQTDLHPSGRAEAYASLFRRSLDEDGPMR 1027

Query: 268  SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV- 326
            +LP+      +     T          +  +           S      +          
Sbjct: 1028 ALPDGTQIEVVTDEGTTVPVEVNATTVDLPDGRVVYGVFRDVSERKAMQKRLTRRERRFR 1087

Query: 327  -----DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
                    P+       G +  AN + +    Y   D +             +LS     
Sbjct: 1088 MMFEGHSAPMLLIDEETGAIEQANAAAVEFYGYDR-DMLTSMSIQD----INQLSAEEVA 1142

Query: 382  KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
            +       D         L +          +  +     N          +  +     
Sbjct: 1143 RERREAAEDGDEFLFEHELAS-----GEVRTVRVLSAPVPNLDRGGTLLFSVIHDVTQRE 1197

Query: 442  INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
             +++ +  +   L  +L+   D   +++ +G +L  NR V+++ GY   ++         
Sbjct: 1198 EHRQDLADQKAFLDQVLDTIDDVFYLLDEQGDLLFWNRRVNEVTGYTDAELEAMTALDLF 1257

Query: 502  EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS---LRIIIKKLPFSSCYSLTM 558
            E +  + +   + E  +    +         TK+ + ++   +                 
Sbjct: 1258 EGDDAARIRDAIEESAAGQAVRV---EAPLVTKDGRRVAHEFVGDAFDAPTRGRVLCGIG 1314

Query: 559  HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
             D+++ K+        ++   + +     F   V
Sbjct: 1315 RDVTQQKE-------RRRALRRANHRFDQFAETV 1341



 Score = 91.2 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 44/509 (8%), Positives = 137/509 (26%), Gaps = 44/509 (8%)

Query: 95  LKEISEELPKTIGNYAFKMIG--MRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPI 152
           L  ++       G      +   M     +      P       L     W G+  +   
Sbjct: 223 LAYVNSSEEHIFGRPTDAFVRDPMLWRSAAHPKD-QPELPTARDLLEHGRWRGEYRVLRP 281

Query: 153 EGTNLYV--PIDLAALPIYS-------RNREFSG-FRGFGIVHVNRVDNDPR-------- 194
           +GT  +V   + +   P +S         R      +  G+                   
Sbjct: 282 DGTAQWVETSVQVVGRPSFSSQDGSSQDERTLDAPVKLAGVTRSIHRRKQAEASVQEKSA 341

Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSSLTEYYAHKDD 252
           AL +   +    L     G              +       +    + +     + H  D
Sbjct: 342 ALAEEKTRLRVALDAADAGVFEWSIPDDRRVWDERTQALFGVDAAPQTTGALLGHVHPGD 401

Query: 253 VLK---TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
             +   T    L T ++ +   +      +      +     L++   ++   +      
Sbjct: 402 RGRLQDTMARVLGTPDKETCQVRYRIRRPDGEDRHVQARARILRDEDGDAERLIGTYQDV 461

Query: 310 SLSAYFDEGENLTPETVDKC-----PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364
           +      +    +    +        +   +   G L   N + L        D +    
Sbjct: 462 TERRRRRQKLRRSERQFEAVFQDPNLLTGLLDLDGTLRRVNDAALSFIGADRTDVVGRPF 521

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
             +   D       +    +    +    +   ++  T       +  +         + 
Sbjct: 522 WETPWWDHDSALQADLQGWIE-RAAAGEYVTYQSQHVT---GNGLTFTVRGSIRPVTGED 577

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
                      +       +R++E+    L   +E +++G+A++  +   +  ++  + +
Sbjct: 578 GTVTALIVSGRDVTAREDQRRELEV----LHQAVEDSAEGMAVLAGD-EYVYVDQTHAHM 632

Query: 485 FGYPVED-ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +G+  ++ +L   + +   ++    +   +  +L  +     + +  G   +       +
Sbjct: 633 YGFDDKEQLLGNTWRMLYGEDEIERLEKTVFPVLEEEGHW--QGLVTGQRPDGSTFPAAL 690

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLS 572
            +  +  +     T+ D+++ +    K  
Sbjct: 691 SLT-VTEAGRLVCTVRDMTDRRNRNRKRQ 718



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 48/496 (9%), Positives = 125/496 (25%), Gaps = 39/496 (7%)

Query: 96  KEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR--QNTWYGKTTLW--- 150
           + +++     IG     ++G    +       D ++ +   L+   +    G+   +   
Sbjct: 499 RRVNDAALSFIGADRTDVVGRPFWE---TPWWDHDSALQADLQGWIERAAAGEYVTYQSQ 555

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
            + G  L   +  +  P+   +   +     G     R         + L+     + + 
Sbjct: 556 HVTGNGLTFTVRGSIRPVTGEDGTVTALIVSG-----RDVTAREDQRRELEVLHQAVEDS 610

Query: 211 KKGHSSVEKEKYDIFSQQSPPP-HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
            +G + +  ++Y    Q          K ++   T    + +D ++  +  +    E   
Sbjct: 611 AEGMAVLAGDEYVYVDQTHAHMYGFDDKEQLLGNTWRMLYGEDEIERLEKTVFPVLEEEG 670

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
             Q        +  T           +      +             +      ET    
Sbjct: 671 HWQGLVTGQRPDGSTFPAALSLTVTEAGRLVCTVRDMTDRRNRNRKRQLLLTASET---- 726

Query: 330 PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389
            I  +    G +                                   D + ++       
Sbjct: 727 GIAEWDLQAGQI--------RWDGMLRNIFGRAPESTDDFFALIHPEDRSRVRDGFDSVV 778

Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449
           D +  + +        +       T        +  E         +  + +        
Sbjct: 779 D-SASSWNGEFRIEDGDGRTRWIETL--VIPIFEDGEVGRLLASGTDVTERK-------E 828

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
              +L   L  T  GI   N +   +  +  +  LFG+  +      FT  +  N    +
Sbjct: 829 RQRKLDLALAGTDTGILEWNLQTGEMQWDETLQDLFGHDPQTFEA--FTEIVHPNDLPDV 886

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-CYSLTMHDISEWKQEK 568
              L  + S       +       +    +SLR         +        D++   + +
Sbjct: 887 EAALENMTSTGESWEGDFWLFHPEEGVARMSLRATPVHEKGEAVRVLGIATDVTAQWERQ 946

Query: 569 NKLSHAKKIAEKESSH 584
             L+ +++  +     
Sbjct: 947 RDLAASRERYQTLLQA 962



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/389 (9%), Positives = 103/389 (26%), Gaps = 18/389 (4%)

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
                  +         +     + P     +++            D   +  +  +   
Sbjct: 236 RPTDAFVRDPMLWRSAAHPKDQPELPTARDLLEHGRWRGEYRVLRPDGTAQWVETSVQVV 295

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
              S   Q+             +  G  ++  +      +  +    SA   E +     
Sbjct: 296 GRPSFSSQDGSSQDERTLDAPVKLAGVTRSIHRRKQ---AEASVQEKSAALAEEKTRLRV 352

Query: 325 TVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
            +D      F +S   +    +     L    +      A      L       +     
Sbjct: 353 ALDAADAGVFEWSIPDDRRVWDERTQALFGVDAAPQTTGA------LLGHVHPGDRGRLQ 406

Query: 384 VMLYRSDRTCIAASARLH-TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             + R   T    + ++   I+        +        ++  +     G   +  + R 
Sbjct: 407 DTMARVLGTPDKETCQVRYRIRRPDGEDRHVQARARILRDEDGDAERLIGTYQDVTERRR 466

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            ++K+     Q  ++ +  +    +++ +G +   N A     G    D++ +PF     
Sbjct: 467 RRQKLRRSERQFEAVFQDPNLLTGLLDLDGTLRRVNDAALSFIGADRTDVVGRPFWETPW 526

Query: 503 QNTPSVMNHYLTEILSLDLR-QTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM--- 558
            +  S +   L   +      + +   +   T      ++R  I+ +         +   
Sbjct: 527 WDHDSALQADLQGWIERAAAGEYVTYQSQHVTGNGLTFTVRGSIRPVTGEDGTVTALIVS 586

Query: 559 -HDISEW--KQEKNKLSHAKKIAEKESSH 584
             D++    ++ + ++ H       E   
Sbjct: 587 GRDVTAREDQRRELEVLHQAVEDSAEGMA 615


>gi|228994184|ref|ZP_04154084.1| hypothetical protein bpmyx0001_49070 [Bacillus pseudomycoides DSM
           12442]
 gi|228765636|gb|EEM14290.1| hypothetical protein bpmyx0001_49070 [Bacillus pseudomycoides DSM
           12442]
          Length = 611

 Score =  325 bits (832), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 84/375 (22%), Positives = 161/375 (42%), Gaps = 23/375 (6%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +  +   E E  +L S+L   +DG+   +R+G I+  N    K+     E  L +     
Sbjct: 256 QQARSSTESERRKLSSVLSHMTDGVIATDRKGDIILLNDPAEKMLNVSRETALDQSVLEV 315

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
           L       ++H   E  S+ L  +                  +I K+   ++     ++D
Sbjct: 316 LGIQEEFTLDHLYEEPDSVLLDFSTRNEPYILRAS-----FSVIQKETGKANGLIAVLYD 370

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           ++E ++                  + +F+A VSHE+RTPLT +  + E + +  +     
Sbjct: 371 VTEQERI--------------DRERREFVANVSHELRTPLTTMRSYLEALSDGAWQDPNI 416

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
                +          ++ +VN LL +SK++S +  L  E V   +  +  I   +  + 
Sbjct: 417 APQ--FLTVTQEETERMIRLVNALLQLSKLDSTEHRLMKEWVDFTDFFNNVIDRFE-MSK 473

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
           E+ ++ + SF+     I  D   + Q+  NI+SNA+ ++P GG +        +  + + 
Sbjct: 474 EQNVIFKRSFSKKSRFIDMDADKITQVLYNIISNALKYSPEGGTVTYRLRDRED-MLEIS 532

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V D G+G+    +EK  + F ++  ++  +  GTGLGL +AK M++A+ G  +  S   K
Sbjct: 533 VSDQGMGIPKENVEKIFERFYRVDKARSRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEGK 592

Query: 801 GTLIEIIFPLYDTSH 815
           GT I  + P+     
Sbjct: 593 GTTIYFVLPMAKEEE 607


>gi|309792129|ref|ZP_07686601.1| sensor histidine kinase PAS domain-containing protein
           [Oscillochloris trichoides DG6]
 gi|308225670|gb|EFO79426.1| sensor histidine kinase PAS domain-containing protein
           [Oscillochloris trichoides DG6]
          Length = 663

 Score =  325 bits (832), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 98/618 (15%), Positives = 209/618 (33%), Gaps = 28/618 (4%)

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
           L +  + L               +  +         +    +         +      + 
Sbjct: 69  LLRVVAELGASSSTPMPKTIAVGEGLAGWVAQYRRSIILPNTPDIPAPLVAEIAQHALRS 128

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
            +    E         +               L   S  +    +      LS      E
Sbjct: 129 VICVPMEVGEQLHGVLYLARAATALHDFTHDDLCFVSLLAERQAAALQTAHLSDELASSE 188

Query: 320 NLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
                 ++  P+   V      +  AN  FL  T   +   +     +S +     L   
Sbjct: 189 RFIHRVIESVPLSLLVIDQKLQIVSANRHFLTTTHQHTEQILGR--SISHVFPPVMLRFL 246

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
                +    S          ++        S  + +          +      +  +  
Sbjct: 247 QLELKIRTVFSSGESFDGDKMVYRAP---GLSTCIYYYRLIPIKSGDQVDHVLFLMEDIT 303

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
           +      ++      L S+++  SD +  +  +G +++ NRA  ++ G  +E +  +PF 
Sbjct: 304 EREKLGAEVRRAERYLVSVIDWASDLVVSLTPQGEVVTWNRAAERVSGLTIEQVRGRPFL 363

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----Y 554
                     ++  L  +L  +     E   + S  + + + +      +   +      
Sbjct: 364 TLCSVEQRLALDAQLRRLLEGEESVATEAALMTSNPQ-QYVDVAWNCSAMRDDTGAMVAI 422

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                D++E ++ + +L+ + KIA             ++HEIR PL  I   ++++++  
Sbjct: 423 VAVGRDLTERRRLEAQLAQSAKIASLGVMA-----GGIAHEIRNPLAIIAASAQLLEDH- 476

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
             P       +    I  S      I+  LL  S     +    F P+++   + E  +L
Sbjct: 477 --PDDPELRQQCVQKIVTSAQRASLIIEQLLKFSHPPQER----FRPLNIHATLEETFNL 530

Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
           +       ++++R  F+ ++PR+  +   ++Q+  N++ NA +  P GGQ+ ++T  +  
Sbjct: 531 LNHQMLVSQVILRRDFSPDVPRLYGNPELLQQVFTNLILNACNAMPQGGQLTVTTRLS-G 589

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
           E V LR  DTG G+T     K   PF       +  G+GTGLGL ++ +++  + G   +
Sbjct: 590 EHVELRFTDTGHGITKEHAAKIFDPFFTT----RTVGKGTGLGLSISYSIIQQHQGTLEV 645

Query: 795 FSTPAKGTLIEIIFPLYD 812
            S P  G    I  P+ D
Sbjct: 646 VSEPGTGATFVIRLPVSD 663



 Score = 54.6 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 26/259 (10%), Positives = 58/259 (22%), Gaps = 18/259 (6%)

Query: 87  WNID------AHGYLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKR 139
           W  D        G +   +    +  G    ++ G     + S    +  +  +  LL+ 
Sbjct: 325 WASDLVVSLTPQGEVVTWNRAAERVSGLTIEQVRGRPFLTLCSVEQRLALDAQLRRLLEG 384

Query: 140 QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199
           + +   +  L        YV +      +             G            A   +
Sbjct: 385 EESVATEAALM-TSNPQQYVDVAWNCSAMRDDTGAMVAIVAVG--RDLTERRRLEAQLAQ 441

Query: 200 LDKKFSH------LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253
             K  S       +    +   ++      +       P LR   +        A +  +
Sbjct: 442 SAKIASLGVMAGGIAHEIRNPLAIIAASAQLLEDHPDDPELR--QQCVQKIVTSAQRASL 499

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
           +  +        +          T+              Q   +  F     R + +   
Sbjct: 500 IIEQLLKFSHPPQERFRPLNIHATLEETFNLLNHQMLVSQVILRRDFSPDVPRLYGNPEL 559

Query: 314 YFDEGENLTPETVDKCPIP 332
                 NL     +  P  
Sbjct: 560 LQQVFTNLILNACNAMPQG 578



 Score = 45.0 bits (105), Expect = 0.053,   Method: Composition-based stats.
 Identities = 26/284 (9%), Positives = 75/284 (26%), Gaps = 14/284 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL---HIDPNNHIGDLLKRQNTWYG 145
           ID    +   +     T   +  +++G  +  V   +    +     I  +     ++ G
Sbjct: 205 IDQKLQIVSANRHFLTTTHQHTEQILGRSISHVFPPVMLRFLQLELKIRTVFSSGESFDG 264

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
              ++   G +  +      +PI S + +        ++          A  +R ++   
Sbjct: 265 DKMVYRAPGLSTCIY-YYRLIPIKSGD-QVDHV--LFLMEDITEREKLGAEVRRAERYLV 320

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHL-----RMKNKVSSLTEYYAHKDDVLKTEKYP 260
            + +           + ++ +       +             LT     +   L  +   
Sbjct: 321 SVIDWASDLVVSLTPQGEVVTWNRAAERVSGLTIEQVRGRPFLTLCSVEQRLALDAQLRR 380

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
           LL  EES   E     +              +++++      ++     +     +    
Sbjct: 381 LLEGEESVATEAALMTSNPQQYVDVAWNCSAMRDDTGAMVAIVAVGRDLTERRRLEAQLA 440

Query: 321 LTPET--VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEI 362
            + +   +              L     S  LL  +    ++  
Sbjct: 441 QSAKIASLGVMAGGIAHEIRNPLAIIAASAQLLEDHPDDPELRQ 484


>gi|300864985|ref|ZP_07109816.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300337020|emb|CBN54966.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 1629

 Score =  325 bits (832), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 83/411 (20%), Positives = 176/411 (42%), Gaps = 21/411 (5%)

Query: 405  WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
            W       +  I  + +    ++     ++ E  + +  +  +     +  S+L+     
Sbjct: 1234 WQSWEIELLEQITSQLSIAIQQSELYGQLQIELQERQQAEATIREAERRWRSLLDNVQLI 1293

Query: 465  IAIINREGIILSTNRAVSKLFGYPVEDILRKP-FTVFLEQNTPSVMNHYLTEILSLDLRQ 523
            +  ++R G +   N    KL GY   ++L K  F  FL  +    +    +E+L+ +   
Sbjct: 1294 VVGLDRWGNVNYVNPFFLKLTGYTQAEVLGKNWFENFLPHDQQQALQVVFSEVLTHNYHP 1353

Query: 524  TLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKE 581
              + + L  + EE++++    + +    +         DI+E ++ +             
Sbjct: 1354 YYQNLILTKSGEERVIAWNNTMLQDVDENIIGTISIGEDITERQKLE------------- 1400

Query: 582  SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
               K++F+  VSHE+RTPLT I   S  +           +            + ++++V
Sbjct: 1401 -HIKNEFIGIVSHELRTPLTGIQ-MSLGLIKTGVYDRKPEKARRMIEIALLDTHRLVNLV 1458

Query: 642  NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701
            ND+LD+ +I+SG+  L        + + +A+  +Q  A +++I +         ++ A  
Sbjct: 1459 NDILDLERIDSGRAVLEKTVCKAADLIQQAVDGIQAIATQQQISLI--ITPTDVKVWAAP 1516

Query: 702  RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761
             ++ Q   N+L NA+ F+P    I +S  + ++   + +VRD G G+   +LE     F 
Sbjct: 1517 DTIIQTLTNLLGNALKFSPPHSTIHLSAENQAD-FALFQVRDRGRGIPADKLELIFGRFQ 1575

Query: 762  QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
            Q+  S      GTGLGL + +++++ + GK ++ S   +G+      PL +
Sbjct: 1576 QVDASDSREKGGTGLGLSICQSIIERHGGKIWVESILGEGSTFFFTLPLAN 1626



 Score =  118 bits (296), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 55/529 (10%), Positives = 141/529 (26%), Gaps = 37/529 (6%)

Query: 95   LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEG 154
            +   +       G    +  G  +  +       P N I   L     W G+   +  + 
Sbjct: 605  ITFWNHGAELMYGWTKAEAFGQEIKALLKTEFPQPLNVIEAQLLATGYWEGELIHYSRDN 664

Query: 155  TNLYVPIDLAALPIYSRNREFSGFRGF--GIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212
            +   + +    +                  I          +     L   F+       
Sbjct: 665  SP--IAVSSRWVAQKDDLGRLIKVLEINNDISDRKEAAKLLQQSESTLRSFFNSAVVPMG 722

Query: 213  GHSSVEKEKYDIFSQQSPP--PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270
                 + +   I    +     H       +  +         +         ++ +  P
Sbjct: 723  IVELHDGDILHIADNWAAAQFFHNTTAGMQNQFSSSLGTSPATINRWISYYREAQRTQAP 782

Query: 271  EQ-EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
             + E  H  N  +         +  +  E   +     + +     +E        +   
Sbjct: 783  VRFEYLHPTNDGECWLSGTVCPITISPSEYPRFSYIVENITERKLAEEILQQYQRIISNT 842

Query: 330  PIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388
                  +        ANP++L        + I     L  +L      +    +      
Sbjct: 843  TDGIAMMNREYIYQIANPAYLTWCNKSESEVIGN--SLRNILGEELFDNFIQPRLDRCLA 900

Query: 389  SDRTCIAASARLHTIQWNRENSLA---MTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
             +        ++   +W    +L    +        +             +    +  ++
Sbjct: 901  GE--------KIQYERWFDYPNLVPQFLNVTYTPLYDAGENISGVIVSLRDLTQLKQAEQ 952

Query: 446  KMEIEVMQLCSIL-EATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
             +E     L +++    ++GI ++  + G+I+  N    ++FGY + ++  +  +  +  
Sbjct: 953  MLE-----LQAVITRNMAEGICLVRADNGVIVYANPKFEQMFGYDLGELNGQHVS-IVNY 1006

Query: 504  NTPSVMNHYLTEILSLDLRQTLEK--ITLGSTKEEKLLSLRIIIK---KLPFSSCYSLTM 558
            N+ SV    + + +   + Q  E         K+                 +        
Sbjct: 1007 NSESVSAQEVNQAIRTAVLQNHEFSYEVQNVKKDGTPFWCSATCSVFKHSEYGDVLVAVH 1066

Query: 559  HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL--TAIIG 605
             DI+  K  +     A+  + ++S  K + L  ++  IR  L    I+ 
Sbjct: 1067 QDITLAKHLEEIRQDAEAASLQKSR-KENLLWSITQGIRQSLDINVILN 1114



 Score =  113 bits (284), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 62/534 (11%), Positives = 137/534 (25%), Gaps = 72/534 (13%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG--K 146
           +D  G + E +    + +G    K + + + D       D    +   L   +   G  +
Sbjct: 442 LDREGKVLEANPRFSEMLGYTPEKTLSLNVFDWDAHFTFD---EVQKFLTDTSFTSGVFE 498

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL------ 200
           T     +G+   V I      I     E      F            +   K L      
Sbjct: 499 TRHRRQDGSIYDVEI---GTNILEWQGEIM---RFCACRDITERKQAQIALKELNNALEQ 552

Query: 201 ----------------------DKKFSHLHEIKKGHSSVEKEKYDIFSQQSP-PPHLRMK 237
                                   +   L E +     +  +    +   S         
Sbjct: 553 RVIERTVELTKLNDRLLITLLEKDRAYQLLEEQAQLLDLAHDGIISWDINSIITFWNHGA 612

Query: 238 NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ---- 293
             +   T+  A   ++    K            +               +    +     
Sbjct: 613 ELMYGWTKAEAFGQEIKALLKTEFPQPLNVIEAQLLATGYWEGELIHYSRDNSPIAVSSR 672

Query: 294 -----NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK------CPIPFFVYSHGNLF 342
                ++     + L   N  S      +    +  T+         P+       G++ 
Sbjct: 673 WVAQKDDLGRLIKVLEINNDISDRKEAAKLLQQSESTLRSFFNSAVVPMGIVELHDGDIL 732

Query: 343 YA--NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV-MLYRSDRTCIAASAR 399
           +   N +        +      AG  +    +   S     + +     + RT       
Sbjct: 733 HIADNWAAAQFFHNTT------AGMQNQFSSSLGTSPATINRWISYYREAQRTQAPVRFE 786

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459
                 + E  L+ T  P   +    E    + I     + ++ +  ++    Q   I+ 
Sbjct: 787 YLHPTNDGECWLSGTVCPITISPS--EYPRFSYIVENITERKLAEEILQ----QYQRIIS 840

Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL 519
            T+DGIA++NRE I    N A          +++       L +           +    
Sbjct: 841 NTTDGIAMMNREYIYQIANPAYLTWCNKSESEVIGNSLRNILGEELFDNFIQPRLDRCLA 900

Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKL 571
             +   E+         + L++          +     +++ D+++ KQ +  L
Sbjct: 901 GEKIQYERWFDYPNLVPQFLNVTYTPLYDAGENISGVIVSLRDLTQLKQAEQML 954



 Score =  100 bits (250), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 57/563 (10%), Positives = 140/563 (24%), Gaps = 91/563 (16%)

Query: 98  ISEELPKTIGNYAFKMIGM--RLCDVSDILHIDPNN-HIGDLLKRQNTWYGKTTLWPIEG 154
            S E     G       G              +  N      L+ ++ +  +  L   +G
Sbjct: 151 WSPETEHLFGLADGTFDGKYETFDARLHPHDREGLNQARQQALQTKSVYQHEFRLIWPDG 210

Query: 155 TNLYVP-------------IDLAALPIYSRNR---EFSGFRGFGIVHVNRVDNDPRALGK 198
           +  +V              + +A   +   +R   E    + F    +            
Sbjct: 211 SIHWVEGRGHGFDDETGKAVRIAGTLVNIDDRKQSEILLHQQFEQQRLLMEMTQRIRQSL 270

Query: 199 RLDKKFSHLHEIKKGHSSVEKE---------KYDIFSQQSPPPHLRMKNKVSSLT----- 244
            L+       E  +     ++             I  +   PP   + +  S        
Sbjct: 271 NLEDILQTTVEEVRQFLQCDRALIFKTDADYGGKILVESVNPPWNAISSNHSHDPCIGKE 330

Query: 245 -------EYYAHKDDVLKTEKYPLLTSEESSLPEQ----------------EDFHTINLN 281
                       K D+   +  P      ++   +                   H     
Sbjct: 331 YIEPFQQGLVTAKSDIYTAQISPCHREMLAAFQVRANLVVPILQGKNLWGLLVVHHCAAP 390

Query: 282 QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGN 340
           +  +      L+  S ++   +   +   L               +       +    G 
Sbjct: 391 REWQTSEIELLRQLSAQASIAIQKAD---LFEQVKTESLRIQTVFNTSFDGIVILDREGK 447

Query: 341 LFYANPSFLLLTKYKSVDDIE-IAGGLSTLLDAPKLSD-------NNAIKPVMLYRSDRT 392
           +  ANP F  +  Y     +              ++          + +      R D +
Sbjct: 448 VLEANPRFSEMLGYTPEKTLSLNVFDWDAHFTFDEVQKFLTDTSFTSGVFETRHRRQDGS 507

Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN--GIEPEDVDTRINKRKMEIE 450
                   + ++W  E           +  Q    + +    +E   ++  +   K+   
Sbjct: 508 IYDVEIGTNILEWQGEIMRFCACRDITERKQAQIALKELNNALEQRVIERTVELTKLNDR 567

Query: 451 V--------------MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
           +               +   +L+   DGI   +   II   N     ++G+   +   + 
Sbjct: 568 LLITLLEKDRAYQLLEEQAQLLDLAHDGIISWDINSIITFWNHGAELMYGWTKAEAFGQE 627

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556
               L+   P  +N    ++L+       E   +  +++   +++              +
Sbjct: 628 IKALLKTEFPQPLNVIEAQLLATG---YWEGELIHYSRDNSPIAVSSRWVAQKDDLGRLI 684

Query: 557 ----TMHDISEWKQEKNKLSHAK 575
                 +DIS+ K+    L  ++
Sbjct: 685 KVLEINNDISDRKEAAKLLQQSE 707



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 29/190 (15%), Positives = 64/190 (33%), Gaps = 16/190 (8%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            +++ E +++ ++   + DGI I++REG +L  N   S++ GY  E    K  ++ +   
Sbjct: 419 EQVKTESLRIQTVFNTSFDGIVILDREGKVLEANPRFSEMLGYTPE----KTLSLNVFDW 474

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI--IIKKLPFSSCYSLTMHDIS 562
                   + + L+     +    T    ++  +  + I   I +            DI+
Sbjct: 475 DAHFTFDEVQKFLTDTSFTSGVFETRHRRQDGSIYDVEIGTNILEWQGEIMRFCACRDIT 534

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E KQ +  L       E+    ++  L        T L         +  +         
Sbjct: 535 ERKQAQIALKELNNALEQRVIERTVEL--------TKLN--DRLLITLLEKDRAYQLLEE 584

Query: 623 YIEYANYIDR 632
             +  +    
Sbjct: 585 QAQLLDLAHD 594



 Score = 58.1 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 51/195 (26%), Gaps = 28/195 (14%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRK--PF 497
           R+N++ ++    QL   L A   G+   N   G I   +     LFG        K   F
Sbjct: 115 RLNQQLIQENREQLRMALSAARMGMWDWNMVTGEIT-WSPETEHLFGLADGTFDGKYETF 173

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---- 553
              L  +    +N    + L        +        +  +  +          +     
Sbjct: 174 DARLHPHDREGLNQARQQALQTK--SVYQHEFRLIWPDGSIHWVEGRGHGFDDETGKAVR 231

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
            + T+ +I + KQ +  L    +                   IR  L       E I   
Sbjct: 232 IAGTLVNIDDRKQSEILLHQQFEQQRLLMEMTQR--------IRQSLN-----LEDILQT 278

Query: 614 RFGPLGNPRYIEYAN 628
                      ++  
Sbjct: 279 -----TVEEVRQFLQ 288



 Score = 40.4 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 30/331 (9%), Positives = 75/331 (22%), Gaps = 20/331 (6%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI--GDLLKRQNTWYGK 146
            +D  G +  ++    K  G    +++G    +            +   ++L      Y +
Sbjct: 1297 LDRWGNVNYVNPFFLKLTGYTQAEVLGKNWFENFLPHDQQQALQVVFSEVLTHNYHPYYQ 1356

Query: 147  TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
              +    G      I      +   +    G    G               ++L+   + 
Sbjct: 1357 NLILTKSGEERV--IAWNNTMLQDVDENIIGTISIG--EDITER-------QKLEHIKNE 1405

Query: 207  LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
               I             +            K + +      A  D          +   E
Sbjct: 1406 FIGIVSHELRTPLTGIQMSLGLIKTGVYDRKPEKARRMIEIALLDTHRLVNLVNDILDLE 1465

Query: 267  SSLPEQEDFHTI--NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
                 +              ++   G     +++    +       + A  D        
Sbjct: 1466 RIDSGRAVLEKTVCKAADLIQQAVDGIQAIATQQQISLIITPTDVKVWAAPDTIIQTLTN 1525

Query: 325  TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
             +         +S  +L   N +   L + +       A  L  +    +  D +  +  
Sbjct: 1526 LLGNALKFSPPHSTIHLSAENQADFALFQVRDRGRGIPADKLELIFGRFQQVDASDSRE- 1584

Query: 385  MLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
                   T +  S     I+ +       + 
Sbjct: 1585 ----KGGTGLGLSICQSIIERHGGKIWVESI 1611


>gi|83814809|ref|YP_446154.1| putative two-component system sensory/regulatory protein, putative
           [Salinibacter ruber DSM 13855]
 gi|294508078|ref|YP_003572136.1| two-component sensor histidine kinase [Salinibacter ruber M8]
 gi|83756203|gb|ABC44316.1| putative two-component system sensory/regulatory protein, putative
           [Salinibacter ruber DSM 13855]
 gi|294344406|emb|CBH25184.1| two-component sensor histidine kinase [Salinibacter ruber M8]
          Length = 942

 Score =  325 bits (832), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 136/731 (18%), Positives = 245/731 (33%), Gaps = 47/731 (6%)

Query: 98  ISEELPKTIGNYAFKMI--GMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGT 155
           +SE     +G  A         L  + D    +    I   +  Q+ W  +T   P +G 
Sbjct: 226 VSEHAEDVLGLEAEPATFHERCLERIPDPYQREIERSIETAIDEQSDWEFETPFDPPDGE 285

Query: 156 NLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR------ALGKRLDKKFSHLHE 209
              +    A+ P              G++       +           K   +    + +
Sbjct: 286 --RIWALGASTPEQREGETVFN----GVILDITERKEAERRRRTYEELKDSAEDAIVIAD 339

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD---VLKTEKYPLLTSEE 266
                         +F  +      R    +        H+     V +T +   L    
Sbjct: 340 ADGDIIDWNPGAEAMFGYEKEAIVGRPIETIMPDRHRAPHRRGMERVRETGRGRFLGETV 399

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
                 +D H + +                             +      E  +      
Sbjct: 400 ELEGLHQDGHEVPVELALSSWE---ADRERFFGAIIRDITERKNAEQALREERDRFETLF 456

Query: 327 DKCPIPFF---VYSHGNLF-YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
           +  P P         G     ANP+F       + + +     ++ +L   K  D     
Sbjct: 457 ESLPTPVVRCVAQDDGVFVTDANPAFEDTFGLAATEAVGAE--INHILVPEKGHDRARDF 514

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
              +           A +            +  I        PE      I  +  + + 
Sbjct: 515 DRRVL----ESGEVRAEVQRTTAEGMREFQVQAISRRPDEGPPE---IYAIYTDITERKQ 567

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            +R       +L +I   T     ++  +G ++  N    +  G   EDI+  P      
Sbjct: 568 RER-------RLDAIFNHTYQFTGLMEPDGTMIEANDTALRFGGLDREDIVGTPIWKTHW 620

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM---- 558
             T       L E +         +        ++   +   I+ +  +      +    
Sbjct: 621 AQTGEDSKQRLREAVERAAEGEFVRYERPIQGGDEDRIIDFSIRPVTDADGQVELLIPEA 680

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            DI+E K  +  L  AK+ AE+ S  KS  LA +SHE+RTPLT+I+GF+E I ++     
Sbjct: 681 RDITELKWREETLRAAKEEAEEASRLKSAVLANMSHELRTPLTSILGFAEAIDDEASDGA 740

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
           G      +A+ I +SG  +L   +++L++S++E+ + N   EPV +  A       +Q  
Sbjct: 741 GP--VSRFASLIAKSGERLLRTFDNILNLSRLEAEQQNEPAEPVDVAAAARSVADEIQDR 798

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738
           A    I +RT   +   R  A    V  +  ++LSNAI +T +GG + +     +  +V+
Sbjct: 799 AEADDIALRTEVGSATMRTRAPADQVPIVLRHLLSNAITYTEAGGTVWLRVG-RAGGDVV 857

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           + V DTG+GM   E+    +PF Q         EGTGLGL + +  VD   G   + +  
Sbjct: 858 VEVEDTGIGMDPDEVPALFEPFRQASEGFGREYEGTGLGLAVVQRAVDRMGGTVDVATEE 917

Query: 799 AKGTLIEIIFP 809
            +GT + +  P
Sbjct: 918 GEGTCVTVGLP 928



 Score =  103 bits (258), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 44/443 (9%), Positives = 105/443 (23%), Gaps = 54/443 (12%)

Query: 174 EFSGFRGFGIVHVNRVDNDPR--------------------------------ALGKRLD 201
            F G+ G G V        P                                     RL 
Sbjct: 141 AFLGYGGGGTVLATLTGPRPETSPLILLASMGTIAVVETVLTQGWLWIRKTVREQEARLQ 200

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL-----TEYYAHKDDVLKT 256
              + L  +       E               +       +       E           
Sbjct: 201 GLTNSLPGVVFEFFVREDGTVGHHFVSEHAEDVLGLEAEPATFHERCLERIPDPYQREIE 260

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
                   E+S    +  F   +  +          Q   +  F  +      +     +
Sbjct: 261 RSIETAIDEQSDWEFETPFDPPDGERIWALGASTPEQREGETVFNGVIL--DITERKEAE 318

Query: 317 EGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
                  E  D       +    G++   NP    +  Y+    +     + T++     
Sbjct: 319 RRRRTYEELKDSAEDAIVIADADGDIIDWNPGAEAMFGYEKEAIVGRP--IETIMPDRHR 376

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
           + +      +        +  +  L  +  +         +   +A++         I  
Sbjct: 377 APHRRGMERVRETGRGRFLGETVELEGLHQDGHEVPVELALSSWEADRE---RFFGAIIR 433

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIA--IINREGI-ILSTNRAVSKLFGYPVEDI 492
           +  + +  ++ +  E  +  ++ E+    +   +   +G+ +   N A    FG    + 
Sbjct: 434 DITERKNAEQALREERDRFETLFESLPTPVVRCVAQDDGVFVTDANPAFEDTFGLAATEA 493

Query: 493 LRKPFTVFLEQN-TPSVMNHYLTEILSLDLRQTLEKITLGSTKEE-KLLSLR-IIIKKLP 549
           +       L           +   +L       +      +T E  +   ++ I  +   
Sbjct: 494 VGAEINHILVPEKGHDRARDFDRRVLESGE---VRAEVQRTTAEGMREFQVQAISRRPDE 550

Query: 550 FSSCYSLTMHDISEWKQEKNKLS 572
                     DI+E KQ + +L 
Sbjct: 551 GPPEIYAIYTDITERKQRERRLD 573


>gi|332998333|gb|EGK17932.1| aerobic respiration control sensor protein arcB [Shigella flexneri
           VA-6]
          Length = 778

 Score =  324 bits (831), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 86/438 (19%), Positives = 180/438 (41%), Gaps = 21/438 (4%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L +           L  +Q     +     I   +  +         ++ E
Sbjct: 81  EESRQRLSRLVQKLEEMRERDLSL-NVQLKDNIAQLNQEIAVREKAEAELQETFGQLKIE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             +    + ++E +   L S L+A+ D +   N +      NRA+  L G   + ++   
Sbjct: 140 IKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCY 554
                     + +     ++   ++  T E+        +    +R +    ++      
Sbjct: 200 PADVYSPEAAAKVIETDEKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGL 259

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+        +   E+ S  K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 260 MGFGRDITERKR-------YQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE 312

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     +Y   I  S   + +I ND++D+ K+E  K+ L  +PV     +++  +L
Sbjct: 313 LTA----EQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENL 368

Query: 675 VQLYANEKRILIRTSFANNIP---RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
             L A +K   +R +    +P   +++ D   ++QI  N++SNA+ FT  G Q+ +   +
Sbjct: 369 SALQAQQKG--LRFNLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQG-QVTVRVRY 425

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMG 790
              + +   V D+G+G+   EL+K    + Q+ +S   +   GTG+GL +++ +     G
Sbjct: 426 DEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGG 485

Query: 791 KFYIFSTPAKGTLIEIIF 808
              + S   KG+   +  
Sbjct: 486 DITVTSEQGKGSTFTLTI 503


>gi|324018338|gb|EGB87557.1| PAS domain S-box [Escherichia coli MS 117-3]
          Length = 778

 Score =  324 bits (831), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 86/438 (19%), Positives = 180/438 (41%), Gaps = 21/438 (4%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L +           L  +Q     +     I   +  +         ++ E
Sbjct: 81  EESRQRLSRLVQKLEEMRERDLSL-NVQLKDNIAQLNQEIAVREKAEAELQETFGQLKIE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             +    + ++E +   L S L+A+ D +   N +      NRA+  L G   + ++   
Sbjct: 140 IKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCY 554
                     + +     ++   ++  T E+        +    +R +    ++      
Sbjct: 200 PADVYSPEAAAKVIETDEKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGL 259

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+        +   E+ S  K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 260 MGFGRDITERKR-------YQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE 312

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     +Y   I  S   + +I ND++D+ K+E  K+ L  +PV     +++  +L
Sbjct: 313 LTA----EQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENL 368

Query: 675 VQLYANEKRILIRTSFANNIP---RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
             L A +K   +R +    +P   +++ D   ++QI  N++SNA+ FT  G Q+ +   +
Sbjct: 369 SALQAQQKG--LRFNLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQG-QVTVRVRY 425

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMG 790
              + +   V D+G+G+   EL+K    + Q+ +S   +   GTG+GL +++ +     G
Sbjct: 426 DEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGG 485

Query: 791 KFYIFSTPAKGTLIEIIF 808
              + S   KG+   +  
Sbjct: 486 DITVTSEQGKGSTFTLTI 503


>gi|149175132|ref|ZP_01853755.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797]
 gi|148846110|gb|EDL60450.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797]
          Length = 568

 Score =  324 bits (831), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 109/382 (28%), Positives = 185/382 (48%), Gaps = 34/382 (8%)

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
             IL+   D +  +  EG IL  + ++   +G+  E+I  K     L + +     H ++
Sbjct: 15  QQILKFCVDVVITMTEEGRILMASPSIESAWGWNTEEISGKNIYELLTEASRKPCLHCIS 74

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF---SSCYSLTMHDISEW------- 564
           E +            +   K++      +I+ +L      S +     D SE        
Sbjct: 75  ECVVSGNSAVC--ELVVKRKDQSCSLFELILHQLEDSCEGSQFIGIFRDKSERFRLQDQQ 132

Query: 565 --------------KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
                         K+++ +L  A  + E+ +  K++FL+ +SHEIRTP+TAIIG+SEV+
Sbjct: 133 TEYLERLKLTRRELKRKEFELKSALNMVEQANQVKNEFLSNMSHEIRTPMTAIIGYSEVL 192

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
           K      +      +    I R+G+ +L ++ND+LDISKIE G+  L  E     + V E
Sbjct: 193 KE----SVIQAEQHDLIETIQRNGDHLLQVINDILDISKIELGQCELKTEACFPLQIVQE 248

Query: 671 AISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSG-GQIIIS 728
            I+L +  A +K + + T+   +IP  I +D   +KQ+  N++SNA+ FT +G  +I I 
Sbjct: 249 VIALHRPKAVQKGLRLLTNIHESIPETIQSDPIRLKQVLNNLVSNAVKFTNNGFVRIEIR 308

Query: 729 TTHTSNEE--VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
           T + SN E  +   V DTG+G++   L++   PF Q  +S      GTGLGL L++ +V 
Sbjct: 309 TFNRSNFERLLQFNVADTGIGISKDNLKRIFDPFTQADSSMSRPYSGTGLGLTLSQKLVQ 368

Query: 787 ANMGKFYIFSTPAKGTLIEIIF 808
              GK  + ST  +G++  +  
Sbjct: 369 LLGGKLSVQSTVNQGSIFSVTL 390


>gi|159898658|ref|YP_001544905.1| PAS/PAC sensor hybrid histidine kinase [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159891697|gb|ABX04777.1| PAS/PAC sensor hybrid histidine kinase [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 943

 Score =  324 bits (831), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 104/762 (13%), Positives = 232/762 (30%), Gaps = 57/762 (7%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN-TWYGKTTLWPIE 153
           +   +       G+   ++ G+ +            + +  +   ++ T+  +  +    
Sbjct: 64  IMIYNAGYAVIAGSRHPEVFGLPVTAAWPEAADFNQSILDQVFAGKSLTYQKRNFMLHRN 123

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
           G N  V  DL+  PI+ +N E  G     +V +       +   +  ++    L      
Sbjct: 124 GRNEQVWFDLSYSPIFDQNGEIIGVMAL-VVEITAQVLAEQQRHRAEERFQLALDAGLLI 182

Query: 214 HSSVEKEKYDI--------FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
            +       D               P        V ++ E     D     +        
Sbjct: 183 GTWDWDIVADRCIVDPRFAEYFALDPTLASQGVSVETMLEAIHPDDQATIAQLIQSAIHS 242

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTL---QNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
             S   +      + +    +     +       +     +            +  E   
Sbjct: 243 GQSYRAEYRVLHRDGDYRWVEANGFCIFEHNQPQRFPGVLIDITERKRREDALEHSEARL 302

Query: 323 PETVDKCPIP--FFVYSHGNLFYANPSFLLLTKYKSVDDIE-IAGGLSTLLDAPKLSDNN 379
               D  P+   F     G +   N     + ++  +      A G     D        
Sbjct: 303 RAIFDTLPVGLVFAETPTGRITDGNAHVEQILRHPVLPSPATEAYGEWIAYDEHNQLVPI 362

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
              P+ +                          +  I     +             +   
Sbjct: 363 EEYPLAIAVKTGQVSERDFHYQR---GDGTRAWIKVIGGPVRDLDNTITGGLITIIDIDR 419

Query: 440 TRINKRKMEIEVMQLCSILEA-----------TSDGIAIINREGIILSTNRAVSKLFGYP 488
            +  + +++     L  ++             + D + I +  G  L+ N A  +  G+ 
Sbjct: 420 EKRTETQLQALNNDLEGLVAQRTRERDRIWLVSQDLLGIADPAGNWLAINPAWQRTLGWD 479

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
             DIL +        +        + ++ +              +++ +   L       
Sbjct: 480 DSDILGRTSEWLEHPDDHERTRQEVAKLANGIPTSYF--ENRFRSRDGEYHWLSWTAVL- 536

Query: 549 PFSSCYSLTMHDIS--EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
             +        DIS  + +Q + +    +    ++          ++H+    LT+I+G 
Sbjct: 537 -DNGYLYCVARDISNEKQRQAEIERMQTQLRQSQKMEAIGQLTGGIAHDFNNILTSILGG 595

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
            + +  +R           Y N   +S      +   LL  S+ ++    L  +P++++ 
Sbjct: 596 LD-LLQRRINVGRFDTIERYINSAIKSAKRAAALTQRLLAFSRQQA----LDVQPININS 650

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726
            +     L+Q  +  ++I + T+ ++++ R+  D   ++   LN+  NA    P GG + 
Sbjct: 651 LIQSLDDLLQ-RSLGEQIQVATNLSDDVWRVRTDANQLENALLNLAINARDAMPYGGILT 709

Query: 727 ISTT-----------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           IST+              +E V++ V DTG GM++  +E+A  PF          G+GTG
Sbjct: 710 ISTSNIDAQQANQLQLDPHEYVLIEVIDTGTGMSSEVIERAFDPFFTTKPL----GQGTG 765

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
           LGL +    +    G   I S   +GT +++  P   +   H
Sbjct: 766 LGLSMIYGFIKQIGGHIQIESQLEQGTSVKLYLPRDQSGLEH 807



 Score = 47.7 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 12/135 (8%), Positives = 36/135 (26%), Gaps = 9/135 (6%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D  G    I+    +T+G     ++G     +      +        L            
Sbjct: 460 DPAGNWLAINPAWQRTLGWDDSDILGRTSEWLEHPDDHERTRQEVAKLANGIPTSYFENR 519

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
           +       +    L+   +       +G+  + +      +   +A  +R+  +     +
Sbjct: 520 FRSRDGEYHW---LSWTAVLD-----NGYL-YCVARDISNEKQRQAEIERMQTQLRQSQK 570

Query: 210 IKKGHSSVEKEKYDI 224
           ++          +D 
Sbjct: 571 MEAIGQLTGGIAHDF 585


>gi|148657974|ref|YP_001278179.1| multi-sensor hybrid histidine kinase [Roseiflexus sp. RS-1]
 gi|148570084|gb|ABQ92229.1| multi-sensor hybrid histidine kinase [Roseiflexus sp. RS-1]
          Length = 1022

 Score =  324 bits (831), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 118/659 (17%), Positives = 227/659 (34%), Gaps = 50/659 (7%)

Query: 159 VPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK--KFSHLHEIKKGHSS 216
           + I ++ +   +   E    R F  +   R    P            F       +G S 
Sbjct: 115 LAIRVSYVAFATPAGEIIYTRRFD-LRDGRDLPTPAEFASFDGDNAVFLRTAAQTEGISG 173

Query: 217 VEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFH 276
           V           + P                    +  + +    LT    S     +  
Sbjct: 174 VVVADGQPMLIAAHPILRSTGASEPRGVLILGRDFNDDELDHLSDLTGFPVSFTLTANAA 233

Query: 277 TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY 336
                    +        ++      +S  +    +             + +   P    
Sbjct: 234 VAPDFDLAYRLMTP----DTPIIVRPMSFSDDRVYAYAQINDLRGGEGIILRINAP---- 285

Query: 337 SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA 396
              ++     S   L     +  I     +  LL       N   + + L          
Sbjct: 286 --RDIVQYGQSSSRLYMLIMLLVIGAFAAVMILLLE----RNVLSRIIALSLQAGRI--- 336

Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
                              +     ++  +         +  D     R++     +   
Sbjct: 337 ----------GRTGDVQARLAVIGNDEVAQLGRAINAMLD--DIAQAARRLAESEARYRQ 384

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           ++E + + I + + +  I+ TN+A ++L G+     ++    T FL              
Sbjct: 385 LVEISPEAIIVHDGK-RIIYTNQAGARLVGHTDPSQLIGADATPFLPPALH--------- 434

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575
           + + +     E+    +      L L            + +  H+I+  KQ +  L  AK
Sbjct: 435 LETAEGVMRYERDLTIADGTGISLELVAAPFLAEGKPAWQIVAHNITVRKQTEEALRQAK 494

Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
           + AE+ +  KS FLA +SHE+RTPLT IIG+++ +           +       +  +G 
Sbjct: 495 EWAEEANRTKSRFLANMSHELRTPLTTIIGYAD-LITISVHSGEFDQVASDIARVRDAGK 553

Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695
            +L I+NDLLD+SKIE+G+M +H E  S+     E I+ ++++A ++   +  +    + 
Sbjct: 554 HLLAIINDLLDLSKIEAGRMEIHSERFSVRALAEEVIASMRVFAQKRNNDLTLNIDPTVE 613

Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-----VILRVRDTGVGMTN 750
            + +D   V+QI  N++ NA  FT  G  + +    T ++      ++  + DTG+GMT 
Sbjct: 614 MMHSDDVRVRQILYNLVHNACKFTEDGA-VTLDIARTVSDHDHAALLVFTISDTGIGMTA 672

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            ++    + F Q  +S   +  GTGLGL L + +     GK  + S P  GT   +  P
Sbjct: 673 DQIAGLFREFTQADSSTTRKYGGTGLGLALCRRLTHLLGGKITVTSQPGVGTTFVVTLP 731


>gi|162449765|ref|YP_001612132.1| protein kinase [Sorangium cellulosum 'So ce 56']
 gi|161160347|emb|CAN91652.1| Protein kinase [Sorangium cellulosum 'So ce 56']
          Length = 1984

 Score =  324 bits (831), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 102/620 (16%), Positives = 215/620 (34%), Gaps = 33/620 (5%)

Query: 211  KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270
             +   ++            P        + S+L      +D+ +            +   
Sbjct: 1370 ARKPIAIADAAVPHRFAMDPYFGGASCRRRSALGVPIVRQDEAVGLLYLENNLVPGAFST 1429

Query: 271  EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330
             +     +  +Q         L    ++              A   +   L    +D  P
Sbjct: 1430 AELGVLDVLASQAAISLENARLYGELQQENA-----QRRRAEASLHDSNALLQAILDNTP 1484

Query: 331  IPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389
               FV    G     N  +  +      D +         L   +++D      +   R 
Sbjct: 1485 AVVFVKAPDGRYLLINRRYEDVVHVSREDILGK---TDHELFPAEIADAVRANDLAALRE 1541

Query: 390  DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449
            D          +    +  ++      P    +         GI  +  + +  +  +  
Sbjct: 1542 D---HPIERDEYVAAPDGIHTFLSLKFPLRHPDGRSYA--VCGIATDVTERKRAEEMLRH 1596

Query: 450  EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
                L + L++T+DGI +++  G  +  NR   +++G P + +L +   + L  +  +  
Sbjct: 1597 SHALLEATLDSTADGILVVDDAGRPVRHNRRFREMWGIPEQVLLSQDDRLALCLDQLADS 1656

Query: 510  NHYLTEILSLDLRQTLEKITLGST----KEEKLLSLRIIIKKLPFS-SCYSLTMHDISEW 564
               L E           +   G       + ++       +++         +  D++  
Sbjct: 1657 EQLLQEARMTR-SVDDPREASGIDTLTFDDGRVFERYSQPQRVSGRIVGRVWSFRDVTTR 1715

Query: 565  KQEKNKL-------SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR-FG 616
             Q + +          A+  AE+    + +FL+  SHE+RTPLT++      ++ +   G
Sbjct: 1716 VQAEQQRDRLLADEQRARARAEEAVRARDEFLSVASHELRTPLTSLQLAVHSMEKKLSRG 1775

Query: 617  PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
              G  R     +   R    ++ +V+ LLD+S+I +G++ L    + L   V E  + + 
Sbjct: 1776 AEGIERARASVDLSQRQTKRLVALVDMLLDVSRIHAGRLELDPIEIDLRAIVGEVTTYLD 1835

Query: 677  LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
                     +    A  +     D + ++Q+  N+LSNAI F   GG+ +  T  +  E 
Sbjct: 1836 DQLARAGCALDVRAAGPVVG-RWDAQRLEQVVTNLLSNAIKFG--GGKPLELTIASDGET 1892

Query: 737  VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
              L V D G+G+     E+  + + +  +S      G GLGL + + +V+A+ G+  + S
Sbjct: 1893 ARLSVTDHGIGIPADVREQVFERYRRGVSS--RHYGGLGLGLYITRTIVEAHGGRVSVSS 1950

Query: 797  TPAKGTLIEIIFPLYDTSHP 816
               +G+   +  PL     P
Sbjct: 1951 EIGEGSTFSVELPLSRDVDP 1970



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/370 (8%), Positives = 82/370 (22%), Gaps = 36/370 (9%)

Query: 91   AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNTWYGKTT 148
              G    I+      +      ++G    ++      D      +  L +       +  
Sbjct: 1492 PDGRYLLINRRYEDVVHVSREDILGKTDHELFPAEIADAVRANDLAALREDHPIERDEYV 1551

Query: 149  LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
              P +G + ++ +     P+   +     +   GI            + +          
Sbjct: 1552 AAP-DGIHTFLSLKF---PLRHPDGR--SYAVCGIATDVTERKRAEEMLRHSHALLEATL 1605

Query: 209  EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
            +       V  +         P  H R   ++  + E      D         L   E  
Sbjct: 1606 DSTADGILVVDDAGR------PVRHNRRFREMWGIPEQVLLSQDDRLALCLDQLADSEQL 1659

Query: 269  LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
            L E     +++  +        T  +           R    +        ++T      
Sbjct: 1660 LQEARMTRSVDDPREASGIDTLTFDDGRVFERYSQPQRVSGRIVGRVWSFRDVTTRV--- 1716

Query: 329  CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388
                        L     +     + ++ + +         L          +  + L  
Sbjct: 1717 ----QAEQQRDRLL----ADEQRARARAEEAVRAR---DEFLSVASHELRTPLTSLQLA- 1764

Query: 389  SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
                     +    +    E              Q    +    +  +       + +++
Sbjct: 1765 -------VHSMEKKLSRGAEGIERARASVDLSQRQTKRLVALVDMLLDVSRIHAGRLELD 1817

Query: 449  IEVMQLCSIL 458
               + L +I+
Sbjct: 1818 PIEIDLRAIV 1827



 Score = 37.7 bits (86), Expect = 9.1,   Method: Composition-based stats.
 Identities = 29/258 (11%), Positives = 68/258 (26%), Gaps = 9/258 (3%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            +D  G     +    +  G     ++     D    L +D       LL+          
Sbjct: 1615 VDDAGRPVRHNRRFREMWGIPEQVLLSQ---DDRLALCLDQLADSEQLLQEARMTRSVDD 1671

Query: 149  LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                 G +     D      YS+ +  SG R  G V   R         ++ D+  +   
Sbjct: 1672 PREASGIDTLTFDDGRVFERYSQPQRVSG-RIVGRVWSFRDVTTRVQAEQQRDRLLADEQ 1730

Query: 209  EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
              +       + + +  S  S      + +   ++           +  +    + + S 
Sbjct: 1731 RARARAEEAVRARDEFLSVASHELRTPLTSLQLAVHSMEKKLSRGAEGIERARASVDLSQ 1790

Query: 269  LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
               +     +++     + + G L+    +  E         ++ Y D+        +D 
Sbjct: 1791 RQTKRLVALVDMLLDVSRIHAGRLE---LDPIEIDLRAIVGEVTTYLDDQLARAGCALDV 1847

Query: 329  CPIP--FFVYSHGNLFYA 344
                     +    L   
Sbjct: 1848 RAAGPVVGRWDAQRLEQV 1865


>gi|302340600|ref|YP_003805806.1| multi-sensor hybrid histidine kinase [Spirochaeta smaragdinae DSM
           11293]
 gi|301637785|gb|ADK83212.1| multi-sensor hybrid histidine kinase [Spirochaeta smaragdinae DSM
           11293]
          Length = 802

 Score =  324 bits (831), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 106/376 (28%), Positives = 181/376 (48%), Gaps = 24/376 (6%)

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
           +     SI      G+ I++    +L +N+    + G        K F+ FLE+ T    
Sbjct: 4   QERIFSSIFMDAPVGVVILSSSDEVLFSNKLFCDIIGKTELPPSTK-FSSFLEEWTDERF 62

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP-------FSSCYSLTMHDIS 562
             YL EI +  +  +  K       +  +   R+ I  L         +  Y +   DIS
Sbjct: 63  LDYLDEIAAS-VSGSGAKEMRYRRDDGSVSWWRLNISNLRPKDSVGADAKRYVVFAEDIS 121

Query: 563 EWKQEKNKLSHAKKIAEKESSH-------KSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
             K  + +L  AK+ +E+           KS+FLA +SHEIRTP+  IIG SE++     
Sbjct: 122 LRKLYEQELREAKESSERAQEAAERATRTKSEFLANMSHEIRTPIHTIIGMSELLSETAL 181

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
               +P   EY   I    +++L ++ND+LD SKIE+GK++L      L +   +A+ +V
Sbjct: 182 ----DPEQQEYTEQIQFGADVLLSLINDILDFSKIEAGKLSLETITFDLYDTAEDAVDMV 237

Query: 676 QLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTS 733
            L A++K +       N++P +L  D   ++QI +N+ +NA+ FT  G  ++ IS    S
Sbjct: 238 SLEAHKKGLETIVYIENDVPHLLLGDPIRLRQIIVNLFNNAVKFTEKGEVELRISLDDRS 297

Query: 734 NEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
           + +V LR  VRDTG+G+   +++   + F Q+ +S   +  GTGLGL ++K + +   G+
Sbjct: 298 DGKVRLRFQVRDTGIGIAEEKVQNLFRVFTQVDSSTTRKYGGTGLGLSISKNLSEMMGGR 357

Query: 792 FYIFSTPAKGTLIEII 807
             + S  + G+     
Sbjct: 358 IGVESRESVGSNFWFT 373


>gi|218528525|ref|YP_002419341.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium chloromethanicum CM4]
 gi|218520828|gb|ACK81413.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium chloromethanicum CM4]
          Length = 786

 Score =  324 bits (831), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 118/643 (18%), Positives = 246/643 (38%), Gaps = 57/643 (8%)

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
            I+  + +    +          P   +     ++T         +   +       E +
Sbjct: 122 RIRAAYPAPAPAETFAGYLADGEPIAILGESAGAMTVNLQAGGQAVVAARRLADGMGEVA 181

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
           + ++ +    N  +                +    ++      +   DE  +L  + +D 
Sbjct: 182 VVQRFEPLADNWWRMFGHHAVSLSAIALVLAGMATAYILQTQRAQAADEVCDLVKQRLDT 241

Query: 329 C----PIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
                    + +       + + S   L  Y    D+   G ++ LL A      +  + 
Sbjct: 242 ALGRGRCGLWDWDIARGTIFWSDSMYALLGYTPEKDLLSFGDVNALLHAEDGDLYSLARH 301

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
           +    +             I+      + +        +    +    GI  +  + R  
Sbjct: 302 LAASHATVD------HEFRIRDASGEWIWLRTRAEIVEDAVDGSRHLVGIAMDVTEQRRL 355

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRKPFTVFLE 502
                   M+L   +EA S+   + +    ++  N     L      + +  + +   + 
Sbjct: 356 AEFTATADMRLRDAVEAVSEAFVLWDASNRLVLCNSKFRDLHALASEDAVPGRRYDEIMG 415

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
           +     +   +         +T E        + + L +    ++      Y     DI+
Sbjct: 416 RGALPPVRRGIPG-SERGPSRTFEVELT----DGRWLQVS---ERRTKDGGYVSVGTDIT 467

Query: 563 EWKQEKNKLSHAKKIAEK-----------------------------------ESSHKSD 587
             K+ + +L  +++   +                                    +  KS+
Sbjct: 468 SLKRHQEQLVTSERELIETVKDLKRSRRTLETQTQQLADLAERHLDQKARAEIANQAKSE 527

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           FLA +SHE+RTPL AI+GF+E+++++ +G LG+PRY +Y   I +SG  +L +++D+L +
Sbjct: 528 FLANMSHELRTPLNAIMGFAELMESEVYGSLGSPRYADYCRDIQQSGTYLLSVIDDILHM 587

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707
           S+IE+ ++ L    + L  A++ A++LV   A  K + I    A  +  +LAD R+++QI
Sbjct: 588 SRIEAKRVKLVRRDIDLGTALTAALTLVAKEAASKSVSIDLELAGTL-HVLADERALQQI 646

Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
            LNI+ NA+ FTP  G++ +    + N  V L + DTG+G+    + K  +PF Q+  + 
Sbjct: 647 LLNIIQNAVKFTPERGRVALR-GRSCNGFVHLFIGDTGIGIPKTAISKLGRPFEQVETNL 705

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
               +G+GLGL +A++  + + G   I S    GTL+ +  P+
Sbjct: 706 TRSYKGSGLGLAIARSTAELHGGSLRIRSEEGIGTLVLVRLPM 748


>gi|56964475|ref|YP_176206.1| two-component sensor histidine kinase [Bacillus clausii KSM-K16]
 gi|56910718|dbj|BAD65245.1| two-component sensor histidine kinase [Bacillus clausii KSM-K16]
          Length = 590

 Score =  324 bits (831), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 109/596 (18%), Positives = 215/596 (36%), Gaps = 65/596 (10%)

Query: 235 RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294
           R+KN+ +              T+   +     + +  +        N             
Sbjct: 42  RVKNEAALAVWAVMRDGYPNSTQAQQIAEEIGTEIEARLTIIDAEGNVIGDSWADPKEME 101

Query: 295 NSKESFEYLSHRNHPSLSAYFDEG-----------ENLTPETVDKCPIPFFVYSHGNLFY 343
           N  +  E    R    L   F E                 E      +   V     L +
Sbjct: 102 NHLDRPEIQRARLDDELELRFSETIGEELLYYALPLEEGREMFGYVRVGVSVEP---LNH 158

Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR--TCIAASARLH 401
            N +   +     +        L T +    +   +      +  ++             
Sbjct: 159 MNRTVWTVIGVSFLGAFIFILFLITRITKQIIHPIDQATKAAIRLAEGDYQTRTYEDHHK 218

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
            +     +  A+ +                             R+ + +  ++ ++++  
Sbjct: 219 ELGLLGRSINALAYNL-----------------------EQLSRRHQAQQDRMAALIDHM 255

Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
              +  +N  G ++  N+   ++F     D L KP+               +  +     
Sbjct: 256 GSALLFMNVRGDVVLLNQTTEQVFEVDSSDWLSKPYYHVFPSQPLIQFVQLV-YMTEKKQ 314

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAE 579
           R  +E          ++  +               +L MHDI+E K+ +           
Sbjct: 315 RSLIE---WTKHFSTRVYDVYGAPVMADSGRLRGVTLVMHDITEQKKLEQV--------- 362

Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY-IEYANYIDRSGNLVL 638
                + DF+A VSHE++TP+T+I GF+E + +   G + +P    ++   I +  + + 
Sbjct: 363 -----RKDFVANVSHELKTPVTSIKGFAETLLD---GAIDDPVLSKQFTEIIWKESDRLQ 414

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
            ++ DLL++SKIE+ +  L  E +SL +   +   LV+  A EK + +          I 
Sbjct: 415 MLIVDLLELSKIENAQFKLDLEDMSLKDITEDVFELVRGKAEEKGMHLHIQ-EQGSSVIE 473

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
            D + +KQ+ LN++SNAI +TPSGG + ++      + V+L+V+DTG+G+   E  +  +
Sbjct: 474 GDWQRLKQVVLNLVSNAISYTPSGGHVTVALK-EQKDAVVLKVQDTGIGIDPKETLRIFE 532

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
            F ++  ++     GTGLGL + K + +A+  K  + S   KGT   + FP    S
Sbjct: 533 RFYRVDRARSRNSGGTGLGLAIVKHLAEAHHAKIEVQSEEGKGTEFSLTFPKKQPS 588


>gi|172057001|ref|YP_001813461.1| integral membrane sensor signal transduction histidine kinase
           [Exiguobacterium sibiricum 255-15]
 gi|171989522|gb|ACB60444.1| integral membrane sensor signal transduction histidine kinase
           [Exiguobacterium sibiricum 255-15]
          Length = 856

 Score =  324 bits (831), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 105/627 (16%), Positives = 234/627 (37%), Gaps = 45/627 (7%)

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPP--HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
            +      + +E   +   +   P   +  ++++  LT  +      + ++K  L++S +
Sbjct: 238 RLTGQLRQLNRESSRLARGEDATPIKVVNARDEIGELTTTFNQMAASISSQKMQLVSSND 297

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
               +QE+          +++      + +  +  +L +RN  + +    E     P  +
Sbjct: 298 ELQSQQEELVAQQEELQMQQEELEEALDTTLRNETHLRYRNELTETLASRETLTAYPAII 357

Query: 327 DKCPIPFFVYSHGNLFYANP-SFLLL--TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
           +K  I       G + + +   +  +           ++     +LL+  ++  +     
Sbjct: 358 EKL-ITITDAELGAIVFLDDDRYTDIVSYGMTPDQQHQLLHSSISLLERARMHKHAVRST 416

Query: 384 VMLYRSDRTCIAASARLHTIQWNR-------ENSLAMTFIPFEKANQFPENMPQNGIEPE 436
             +          S     +            +   + +       Q  E    +     
Sbjct: 417 KQVTSDHPLPYPYSMYETVVPVMDPSTNTMIASIYLVRYRDQFNEEQTEEIWSFSRQLAL 476

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
            +       ++E E  +   +L +  + +  I  +  I   N+ +  LF +P  D   + 
Sbjct: 477 SLLRMRVFDEIEREREKTSKLLHSIREAVIYI-EDDKI-FANKPLLALFHHPSHDQFNEG 534

Query: 497 FTVF--------LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
                       ++ +       Y+  +   D+    E ++L   KEE+ + +     + 
Sbjct: 535 LMTLDVKIEELAVQVDQHEAFLEYMNRVCRHDIPT--EGLSLSLNKEERFVQVYAEGIQY 592

Query: 549 PFS-SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
                   L + D++              I       KS+F++ VSHE+RTPL +I G++
Sbjct: 593 GGRFRGTMLVLRDVT--------------IETGIDRMKSEFVSTVSHELRTPLASIFGYT 638

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
           E++  +    L   R   Y   I      +  +VND LD+ ++ES +    F  + L   
Sbjct: 639 ELMLAKD---LPVDRQQRYLTTIHSETQRLTSLVNDFLDVQRMESSQQQYQFVKLDLRNL 695

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727
           + E         +  ++ + T     +  I AD   ++Q+  N+++NAI ++P GG+ I 
Sbjct: 696 IQEVAEFHAGSTSHHQLTLET-GDRPLRWIEADEPKMRQLFGNLINNAIKYSPDGGE-IE 753

Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
                  + + +++ D G+G+  + L +    F ++ NS   +  GTGLGL + + +V A
Sbjct: 754 LKLEELEDRLRIQIIDEGIGIPQHALPELFSKFYRVDNSDSRKIGGTGLGLAICQEIVRA 813

Query: 788 NMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           + G  ++ ST   G++  I  P    S
Sbjct: 814 HDGLIHVESTEGSGSIFTIELPFEQIS 840


>gi|301057605|ref|ZP_07198685.1| PAS domain S-box protein [delta proteobacterium NaphS2]
 gi|300448329|gb|EFK12014.1| PAS domain S-box protein [delta proteobacterium NaphS2]
          Length = 828

 Score =  324 bits (831), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 100/474 (21%), Positives = 190/474 (40%), Gaps = 29/474 (6%)

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC-IAASARLHTIQWNR---- 407
              ++D +E       +     + +    +   L R +     A    L  +  +     
Sbjct: 38  GLSALDILETL-APDVIFVDLIMPNIGGEELCFLIRKNPALKNAFLIILSALGHDDATDY 96

Query: 408 ---ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT-----RINKRKMEIEVMQLCSILE 459
                   +   P ++         +       +D      +   R++   V +   IL 
Sbjct: 97  RKLGADHFIVKGPLKEMAAEVLAALEQPASEASLDRSGHIRQNINRELLSVVNRYKMILG 156

Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ-NTPSVMNHYLTEILS 518
             S+G+  +  +G I   N +   L G P + +            +    M   L  +  
Sbjct: 157 KMSEGVFEVTADGRITYVNSSALLLTGLPEKSVYGVHIAELFPHRDDGGRMRVALDRLGE 216

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISEWKQEKNKLSHAKKI 577
           + L    +   + + ++     + + I  L    S  ++ + DI+E K+ +  L  AK+ 
Sbjct: 217 VPLTMGEDSPLVLNHRQ-----VSVSILPLNDETSSAAVILTDITERKRVEQALIEAKER 271

Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
           AE  S  KS FLA +SHEIRTP+ A+IGF++++ +            +YA    +SG  +
Sbjct: 272 AETASQTKSHFLANMSHEIRTPMNAVIGFTDMLLDTDL----TDDQRDYAMTAKKSGESL 327

Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR- 696
           L ++ND+LD SKIE+G++N        +    +   +++     K + I      ++P  
Sbjct: 328 LSLLNDILDFSKIEAGELNFEKIDFDPELLSYDVCEVIRPRVESKPVEILCHVGADVPSF 387

Query: 697 ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMTNYEL 753
           +  D    +Q+ +N++SNA  FT SG  ++ +       + +     VRDT +G+   +L
Sbjct: 388 VKGDPGRYRQVLVNLMSNATKFTESGEIELSLDVEAEEADRIKFHATVRDTAMGIPEDKL 447

Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
                PF Q   S   +  GTGLGL + + +     G  ++ S   KG++    
Sbjct: 448 SLIFDPFQQADGSMTRKYGGTGLGLTVCRQLSRFMDGDVWVESEVNKGSIFHFT 501



 Score = 45.0 bits (105), Expect = 0.048,   Method: Composition-based stats.
 Identities = 19/173 (10%), Positives = 45/173 (26%), Gaps = 13/173 (7%)

Query: 285 KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFY 343
             +    L+  + E+    S     +++       N     + K     F V + G + Y
Sbjct: 114 AAEVLAALEQPASEASLDRSGHIRQNINRELLSVVNRYKMILGKMSEGVFEVTADGRITY 173

Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403
            N S LLLT             ++ L                +  +          +   
Sbjct: 174 VNSSALLLTGLPEKSVYG--VHIAELFPHRDDGG-------RMRVALDRLGEVPLTMGED 224

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
                N   ++       +   E      I  +  + +  ++ +     +  +
Sbjct: 225 SPLVLNHRQVSVSILPLND---ETSSAAVILTDITERKRVEQALIEAKERAET 274



 Score = 45.0 bits (105), Expect = 0.049,   Method: Composition-based stats.
 Identities = 8/143 (5%), Positives = 32/143 (22%), Gaps = 8/143 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + + A G +  ++       G     + G+ + ++           +      +     
Sbjct: 162 VFEVTADGRITYVNSSALLLTGLPEKSVYGVHIAELFPHRDDGGRMRVALDRLGEVPLTM 221

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
                 +        + ++ LP+       +      I+                 ++  
Sbjct: 222 GEDSPLVLNHRQ---VSVSILPLNDETSSAA-----VILTDITERKRVEQALIEAKERAE 273

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQ 228
              + K    +    +       
Sbjct: 274 TASQTKSHFLANMSHEIRTPMNA 296


>gi|226314663|ref|YP_002774559.1| two-component hybrid sensor and regulator [Brevibacillus brevis
           NBRC 100599]
 gi|226097613|dbj|BAH46055.1| two-component hybrid sensor and regulator [Brevibacillus brevis
           NBRC 100599]
          Length = 962

 Score =  324 bits (831), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 95/619 (15%), Positives = 211/619 (34%), Gaps = 41/619 (6%)

Query: 214 HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT-EYYAHKDDVLKTEKYPLLTSEESSLPEQ 272
              + +    +        + R          +        L      +   EE  + + 
Sbjct: 212 TRDIGRPLVRLSQNAEQFANGRTPLLQDLNRIDEIGRLSRSLDYLIRQIQAKEEVLMAQN 271

Query: 273 EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP 332
           E+          +++         +E+  YL  +N   LS      ++    ++ +    
Sbjct: 272 EELQAQQDELMMQQEELQEALGKMEENERYLEKKNRFILSLSNTLDKSELLSSIIRNITE 331

Query: 333 FFVYSHGNLFYAN-PSFLLLTKYK--SVDDIEIAGGLSTLLDAPKLSD-----NNAIKPV 384
                 G +   N              ++ +   G         + +             
Sbjct: 332 VMDADKGVIVMLNTDRDAASFGVSQNGLEQLR-KGLDDGPFVRIRETGLPYVLMRESTDA 390

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED---VDTR 441
               ++         L  +   +     +      +     E     GI  +    +D  
Sbjct: 391 ERGYTEEKSQTFELYLPVLDAQQTIVACIICSRIGRKFTNQELRVIIGIAKQISLALDKL 450

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI-LRKPFTVF 500
               + E +      +L++  +GI +I+  G  L  N    +L  Y  +          F
Sbjct: 451 EMYEETERQRKMTQDMLDSVQEGIQLIDLSGETLQVNWNFCELLCYDHQLASQGFDLEQF 510

Query: 501 LEQ------NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII-KKLPFSSC 553
           L            ++ +  + +L      +   +   +  + + + L      +      
Sbjct: 511 LSHLQSRTSEPDRLIQYVRSVVLDEGAIPSGSIVFEMTGPQIRYIQLYAEPLYRNQEKWS 570

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
             L   D +                 +    KS+F++ VSHE+RTPL +++GF+E++  +
Sbjct: 571 TLLVYRDFT--------------KEYEIDQMKSEFVSTVSHELRTPLASVLGFAELLLTK 616

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
           +  P    R   Y   I +    +  ++ND LD+ ++ESG+     E V++D+ + +   
Sbjct: 617 KLKP---ERQQRYIATIYQEATRLTALINDFLDLQRMESGRQTYELENVAIDQVIRDIFE 673

Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
           L ++ +   R             +  D   + Q+ LN++SNA+ ++P GG + +      
Sbjct: 674 LHRVQSPLHR--FELDLQTEKTVVSGDQAKLHQVFLNLISNAVKYSPHGGHVRVGCR-QD 730

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
              +++ V+D G+G+ +  +      F ++ NS +    GTGLGL + + +V  + G+  
Sbjct: 731 GNRLLVEVQDEGLGIPSEAIPHLFTKFYRVDNSDRREIGGTGLGLAIVQEIVHMHHGEVS 790

Query: 794 IFSTPAKGTLIEIIFPLYD 812
           + S   KG+   +  PL +
Sbjct: 791 VISESGKGSTFTVTLPLAE 809


>gi|163792969|ref|ZP_02186945.1| multi-sensor signal transduction histidine kinase [alpha
           proteobacterium BAL199]
 gi|159181615|gb|EDP66127.1| multi-sensor signal transduction histidine kinase [alpha
           proteobacterium BAL199]
          Length = 757

 Score =  324 bits (831), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 108/619 (17%), Positives = 235/619 (37%), Gaps = 23/619 (3%)

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSP---PPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
            + + +       + V   ++ +    S       +   + +        + D       
Sbjct: 144 ARLAEVVRHSANPTYVMDLEFRLVWMNSAFLDTFGVLWTDAIGRRPSDVLYGDQGEPALV 203

Query: 259 YPLLTSEESSLPEQEDF--HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
             + ++  ++   + +         +          ++   +   Y++ R   +     +
Sbjct: 204 AEVRSALTATGHYRGEIMNRDRLGQERVFALQLDRFRSVDGQHEGYVAIREDITERKRAE 263

Query: 317 EGENLTPETVDKCPIPF--FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
                +             + +       AN  FL L+             +        
Sbjct: 264 RALAESEARFRDLTETASDWFWETD----ANHRFLSLSGAWPRPQDMDRDLIGAKRWDFA 319

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
             D  +          +   +     + +  + +  + ++       +     +   G  
Sbjct: 320 AGDMLSQPWRQHLDDLQNHRSFRDFRYVLHRSGDALVHVSISGRPVFSPEGRFVGYRGTG 379

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF-GYPVEDIL 493
            +  +    +      V +L   L++  D +A+ + +  ++  NR    L   +    I 
Sbjct: 380 RDITE----EVSARETVDRLVRALDSIEDVVALFDADERLVFANRPYRALHPQFDGILIP 435

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE-KITLGSTKEEKLLSLRIIIKKLPFSS 552
            K     L       +       +   L Q           +  +   ++    +     
Sbjct: 436 GKKLGEILNDFALRGIIDNPETEVPKRLHQFRNPSGPTDINRFGRWFRVKD---QKLGDG 492

Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
              L   D++  K  + +L  A   AE+ ++ KS FLAR+SHE+RTPL AI+G SE +  
Sbjct: 493 GTLLIATDVTHSKDAELELRKAVDTAEEANAAKSGFLARMSHELRTPLNAILGLSETLML 552

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
                L   +  EY   + ++G ++L  ++D+L+ +++++    +  +P     +V+E +
Sbjct: 553 ME-DRLSPAKRREYLGDVMQAGRILLSHIDDILNFARLDADGFAVTPQPTDPRRSVAEVV 611

Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
            L+++ A  + + +  + A N+P +LAD RS++QI +N+LSNA+ F+P  G + +     
Sbjct: 612 RLMRVVARSRSVRLEAALARNLPSVLADPRSIRQILINLLSNAVKFSPKHGVVQLMV-IQ 670

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQI-PNSQQIRGEGTGLGLPLAKAMVDANMGK 791
               +   V D G+G+   ++++  +PF Q+   S  +   GTGLGL + K++VD N G 
Sbjct: 671 DGSRLRFSVSDHGIGIPADQIDQIFEPFHQVGNPSLAVPDSGTGLGLSIVKSLVDRNAGA 730

Query: 792 FYIFSTPAKGTLIEIIFPL 810
             + STP +GT I + FPL
Sbjct: 731 VAVDSTPGRGTTISVWFPL 749



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 47/375 (12%), Positives = 94/375 (25%), Gaps = 23/375 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTW 143
           T+ +D    L  ++     T G      IG R  DV      +P     +   L     +
Sbjct: 157 TYVMDLEFRLVWMNSAFLDTFGVLWTDAIGRRPSDVLYGDQGEPALVAEVRSALTATGHY 216

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
            G+       G      + L      S + +  G+    I                 + +
Sbjct: 217 RGEIMNRDRLGQERVFALQLD--RFRSVDGQHEGY--VAIREDITERKRAERALAESEAR 272

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEKYPL 261
           F  L E            +   S     P  +   ++ + +    +A  D + +  +  L
Sbjct: 273 FRDLTETASDWFWETDANHRFLSLSGAWPRPQDMDRDLIGAKRWDFAAGDMLSQPWRQHL 332

Query: 262 --LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
             L +  S    +   H               + +       Y       +      E  
Sbjct: 333 DDLQNHRSFRDFRYVLHRSGDALVHVSISGRPVFSPEGRFVGYRGTGRDITEEVSARETV 392

Query: 320 NLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
           +     +D       ++     L +AN  +  L                 +L   K    
Sbjct: 393 DRLVRALDSIEDVVALFDADERLVFANRPYRAL-----------HPQFDGILIPGKKLGE 441

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF-IPFEKANQFPENMPQNGIEPED 437
                 +    D        RLH  +     +    F   F   +Q   +     I  + 
Sbjct: 442 ILNDFALRGIIDNPETEVPKRLHQFRNPSGPTDINRFGRWFRVKDQKLGDGGTLLIATDV 501

Query: 438 VDTRINKRKMEIEVM 452
             ++  + ++   V 
Sbjct: 502 THSKDAELELRKAVD 516



 Score = 71.6 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 46/424 (10%), Positives = 109/424 (25%), Gaps = 35/424 (8%)

Query: 28  KKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTW 87
           + +D   E   + +E+       +    +        T                   + W
Sbjct: 240 RSVDGQHEGYVAIREDITERKRAERALAESEARFRDLTETASD--------------WFW 285

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI-DPNNHIGDLLKRQNTWYGK 146
             DA+     +S   P+        +IG +  D +    +  P     D L+   ++   
Sbjct: 286 ETDANHRFLSLSGAWPRPQDMDRD-LIGAKRWDFAAGDMLSQPWRQHLDDLQNHRSFRDF 344

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
             +    G  L   + ++  P++S    F G+RG G       +   R    RL +    
Sbjct: 345 RYVLHRSGDALVH-VSISGRPVFSPEGRFVGYRGTG--RDITEEVSARETVDRLVRALDS 401

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
           + ++     + E+  +     ++  P                +   +      P     +
Sbjct: 402 IEDVVALFDADERLVFANRPYRALHPQFDGILIPGKKLGEILNDFALRGIIDNPETEVPK 461

Query: 267 SSLPEQEDFH--TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
                +       IN      +     L +        L      + S   +       +
Sbjct: 462 RLHQFRNPSGPTDINRFGRWFRVKDQKLGD-----GGTLLIATDVTHSKDAELELRKAVD 516

Query: 325 TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
           T ++          G L   +           ++ I        L++             
Sbjct: 517 TAEEANAA----KSGFLARMSHELR-----TPLNAILGLSETLMLMEDRLSPAKRREYLG 567

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
            + ++ R  ++    +        +  A+T  P +      E +    +       R+  
Sbjct: 568 DVMQAGRILLSHIDDILNFARLDADGFAVTPQPTDPRRSVAEVVRLMRVVARSRSVRLEA 627

Query: 445 RKME 448
               
Sbjct: 628 ALAR 631



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/285 (13%), Positives = 83/285 (29%), Gaps = 34/285 (11%)

Query: 331 IPFFVYSHGNLFY--ANPSFLLLTKYKSVDDIEIA-------GGLSTLLDAPKLSDNNAI 381
                   G +     N + LL         I  A        G+  LL      D    
Sbjct: 4   TGLIASDPGAILLSLTNRAQLLPVGPSMTAAIRGAVLALPFVSGVEVLLLDTAADDGAVD 63

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
                   +        RL  ++    +     F P E   +   ++    I       R
Sbjct: 64  DWTH----EYEIGPGPDRLGKVRLRVSDVTG--FKPLEPMLRDACSLLGLSIAHRRAQLR 117

Query: 442 INKRKME----------------IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
              + +                  E  +L  ++  +++   +++ E  ++  N A    F
Sbjct: 118 FETQALAQSEQLEEGREELERHVAENARLAEVVRHSANPTYVMDLEFRLVWMNSAFLDTF 177

Query: 486 GYPVEDILRKPFTVFLEQNT-PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
           G    D + +  +  L  +     +   +   L+       E +      +E++ +L++ 
Sbjct: 178 GVLWTDAIGRRPSDVLYGDQGEPALVAEVRSALTATGHYRGEIMNRDRLGQERVFALQLD 237

Query: 545 IKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
             +        Y     DI+E K+ +  L+ ++      +   SD
Sbjct: 238 RFRSVDGQHEGYVAIREDITERKRAERALAESEARFRDLTETASD 282


>gi|312868823|ref|ZP_07729012.1| PAS domain S-box protein [Lactobacillus oris PB013-T2-3]
 gi|311095666|gb|EFQ53921.1| PAS domain S-box protein [Lactobacillus oris PB013-T2-3]
          Length = 617

 Score =  324 bits (831), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 90/479 (18%), Positives = 186/479 (38%), Gaps = 44/479 (9%)

Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS-ARLHTI 403
           N    +L +            ++ +  +  L        + +  S          R  T+
Sbjct: 157 NVVGAVLLRASLEGVYSNINNITLIYLSAALVTIILSLFLAVLISQEITRPIEEMRKQTL 216

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI-EVMQLCSILEATS 462
           +  R       F    +     E     G            ++    E  +L S+L   S
Sbjct: 217 RIARG-----DFSGQVRVMGNDELGQLAGAVNNLSVRVEEAQESSDSERRRLDSVLSHMS 271

Query: 463 DGIAIINREGIILSTNRAVSKLFGYP-VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
           DG+   +R G I   N    +L G    +D++ K     L+      +   +        
Sbjct: 272 DGVLATDRRGNITIVNNMALQLLGVDHEDDLIGKSIIDALDIRHDYTVRELIN------- 324

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKI 577
               +++ +  +     L L      +   S +       +HD++  ++E+ +       
Sbjct: 325 -SNQKEMIIDMSAGGNDLILNAYFSPIQRESGFISGLVCVLHDVTSQQKEERE------- 376

Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
                  +  F++ VSHE+RTPLT++  + E + +  +         ++   I    N +
Sbjct: 377 -------RKQFVSNVSHELRTPLTSVHSYVEALSDGAW--KDKDIAPQFLTVIQNETNRM 427

Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE-------KRILIRTSF 690
           + ++NDLL +S+++SG   L+ E V++ E  +  ++   +   +       K+  I   F
Sbjct: 428 IRMINDLLSLSRMDSGTTKLNLEYVNIKELFNYILNRFDMIIKKDENDQNSKKYTIERYF 487

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
            +    +  D     Q+  NI++NAI ++P GG I       ++  VIL + D G+G+  
Sbjct: 488 TDKDLWVEIDTDKFTQVIDNIMNNAIKYSPDGGVITTRL-LETHNHVILSISDQGLGIPR 546

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            +L +    F ++  ++  +  GTGLGL ++K +++   G+ ++ S   +G+   I  P
Sbjct: 547 KDLGRIFDRFFRVDKARSRKQGGTGLGLAISKEVINLLGGQIWVDSIEGQGSTFYISLP 605


>gi|257094337|ref|YP_003167978.1| multi-sensor hybrid histidine kinase [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257046861|gb|ACV36049.1| multi-sensor hybrid histidine kinase [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 1074

 Score =  324 bits (831), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 111/656 (16%), Positives = 219/656 (33%), Gaps = 47/656 (7%)

Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD 252
                   D   S   +  +    + K      S  +    +   +K+   +        
Sbjct: 49  RLQAMLLEDFIASEPQQWDRSAPRLAKLLERHESADTRITVVNQADKILLASPQRGDGPT 108

Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
           + +             L  +    +  L           L          L  R      
Sbjct: 109 LSRNRALYSSGQAVGRLTIERTMTSEFLTGLPVLLGSLGLAWLIWSPLRRLPLRALAEAE 168

Query: 313 AYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
           A  +  +      +D  P   ++          N  F+ +    S + +     +   + 
Sbjct: 169 AALEARDQYQHALLDNFPFMVWLKDTESRFLAVNARFVEVFAQPSAESLLGKSDVD--IA 226

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
           +P+L++           +          + +          +       A      +   
Sbjct: 227 SPELAERYRADD-RAVLASGCPRRVEEPVES----GGQQRWLETYKSPVAL-AGRVIGTV 280

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI--INREGIILSTNRAVSKLFGYPV 489
           G   +  ++++    +     +   +L    D IA+     +G     N A  +L+GY  
Sbjct: 281 GYARDITESKLAADALRESEERFRRLLNDV-DSIALQGYREDGTTRFWNPAAERLYGYSA 339

Query: 490 EDILRKPFTVFLEQ-NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            + + +     +        +   + E+    +  T         K+   +++      +
Sbjct: 340 AEAIGRNLLDLIVPAEMRDDVRQAIREMCRTGVA-TAPAELSLQRKDGSRVAVFSSHVLV 398

Query: 549 PFSSC---YSLTMHDISEWKQEKNKLSHAKKIAEK------------------ESSHKSD 587
                         D++E  +  ++L+  +   E+                   S  KS 
Sbjct: 399 QIPGRPSEIFCIDVDLAERNRAADELAQHRDHLEELVQSRTAELAEAKEAAEAASRSKSA 458

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           FLA +SHEIRTP+ AIIG + +++ +    + NP+     N I+ +   +L IVND+LD+
Sbjct: 459 FLANMSHEIRTPMNAIIGLNHLLQQE----ITNPKQRAQLNKINDAAQHLLGIVNDILDL 514

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQ 706
           SKIE G++ L     SL   +   +S++   +  K + +       IP  +  D   + Q
Sbjct: 515 SKIEVGRLTLEETDFSLLRVIDHTLSMLGERSRAKGLQLLRDIDPAIPVPLRGDPLRLGQ 574

Query: 707 IALNILSNAIHFTPSGGQIIISTTH-TSNEEV---ILRVRDTGVGMTNYELEKAMKPFGQ 762
           I LN +SNA+ F+  G QI +         +V    L V D G+G+T  +  +    F Q
Sbjct: 575 ILLNFVSNAVKFSDHG-QITLRARLIEMQGKVATLRLEVEDRGIGLTGAQQARLFAAFSQ 633

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI--EIIFPLYDTSHP 816
              S   +  GTGLGL + + +     G+  + S P  G+     +     D + P
Sbjct: 634 ADESTTRKYGGTGLGLTICRRLAAMMGGEVGVVSEPGVGSTFWTTVRLGRVDNARP 689



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/252 (7%), Positives = 60/252 (23%), Gaps = 16/252 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIG-NYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144
            W  D       ++    +      A  ++G    D++     +        +       
Sbjct: 189 VWLKDTESRFLAVNARFVEVFAQPSAESLLGKSDVDIASPELAERYRADDRAVLASGCPR 248

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
                 P+E       ++    P+ +      G  G+                +  +++F
Sbjct: 249 RVEE--PVESGGQQRWLETYKSPV-ALAGRVIGTVGYA--RDITESKLAADALRESEERF 303

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS-------LTEYYAHKDDVLKTE 257
             L       +     +       +P          +             A   D ++  
Sbjct: 304 RRLLNDVDSIALQGYREDGTTRFWNPAAERLYGYSAAEAIGRNLLDLIVPAEMRDDVRQA 363

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY---LSHRNHPSLSAY 314
              +  +  ++ P +      + ++         +Q   + S  +   +        +  
Sbjct: 364 IREMCRTGVATAPAELSLQRKDGSRVAVFSSHVLVQIPGRPSEIFCIDVDLAERNRAADE 423

Query: 315 FDEGENLTPETV 326
             +  +   E V
Sbjct: 424 LAQHRDHLEELV 435



 Score = 43.1 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 47/152 (30%), Gaps = 8/152 (5%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH--IDPNNHIGDLLKRQ-NTWYGKTT 148
            G  +  +    +  G  A + IG  L D+        D    I ++ +    T   + +
Sbjct: 321 DGTTRFWNPAAERLYGYSAAEAIGRNLLDLIVPAEMRDDVRQAIREMCRTGVATAPAELS 380

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           L   +G+ + V      + I  R  E      F I       N       +       L 
Sbjct: 381 LQRKDGSRVAVFSSHVLVQIPGRPSEI-----FCIDVDLAERNRAADELAQHRDHLEELV 435

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV 240
           + +    +  KE  +  S+        M +++
Sbjct: 436 QSRTAELAEAKEAAEAASRSKSAFLANMSHEI 467


>gi|270308281|ref|YP_003330339.1| sensor histidine kinase/response regulator [Dehalococcoides sp. VS]
 gi|270154173|gb|ACZ62011.1| sensor histidine kinase/response regulator [Dehalococcoides sp. VS]
          Length = 1258

 Score =  324 bits (831), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 110/750 (14%), Positives = 236/750 (31%), Gaps = 63/750 (8%)

Query: 87   WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK 146
            W  D    L   SE      G     +    +  +    +    +   + L  QN  Y  
Sbjct: 406  WEFDLSSGLVNPSEGARAIYGLTEDTVTIPFVQMIPVPEYRASLDTALNNLITQNIPYDI 465

Query: 147  TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                     + +  + + ++  +   R       FG +           L +  + +F  
Sbjct: 466  EFKIKR--PSDWAILYIHSIAEFDPERNVV----FGTIQDITKRKQAEELLRVSEARFRS 519

Query: 207  LHEIKKGHSSVEKEKYDIFSQQSPP-----PHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
              +     +++                      +  N ++     Y    D    +   L
Sbjct: 520  TFDQSPIGAAIYDSDLKYRQVNDKFCRMLGYSDKELNSLTVRDITYTDDLDQDIDQLNHL 579

Query: 262  LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
               + +     + +   N + +        ++++      YL+     +     ++    
Sbjct: 580  KNGDINRYETDKRYLHKNGSIFWAHISVAIIKDSDGNFLYYLAMIMDITARKEAEDALQK 639

Query: 322  TPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDI-----EIAGGLSTLLDAPK 374
                 +             G +  AN + +    Y   + +     +++   + +L   +
Sbjct: 640  YKLIAEDSRDIILFMDRITGQILEANNAAVKAYGYSRKELLTMKIQDLSNPQAKMLTEKQ 699

Query: 375  LS---DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
            +     +  +      R D +                 +L                    
Sbjct: 700  IDYAYAHGMLFETSHMRKDGSIFPVEVSSRGADIEGTTTL-------------------I 740

Query: 432  GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-----GIILSTNRAVSKLFG 486
             I  +    +  +  +   +     +  + +D I +   E     G  +  N A   + G
Sbjct: 741  NIIRDTTARKQAENALNESLQNYQVLFNSVTDAILVHQPEADYSVGKFIEVNDAAMSMLG 800

Query: 487  YPVEDILR-KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
            Y  +++L+  P  + L+          +   +        E   +    E   + L   +
Sbjct: 801  YNRKELLQITPAEILLDGKYRIDEAPDIIRNVEQSNEVVAEYTLVTKKGELIPVELHSRM 860

Query: 546  KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS--HKSDFLARVSHEIRTPLTAI 603
             +L           DI E K+ + +    +  +E  S      +  A ++HEI  PLT +
Sbjct: 861  FELGGKRTVITLARDIRERKKLEEEQKKLRYQSEMSSRLAAVGEMAAGIAHEINNPLTGV 920

Query: 604  IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
            IGF+ ++  +   P      +E    I+     V+DIV  +L  ++    +       V+
Sbjct: 921  IGFASILMEREDLPRD---VMEQLQIINSGSQRVVDIVKRMLTFAR----QAKPVRHQVN 973

Query: 664  LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA---IHFTP 720
            + E +   + L         I +   +   +P +  D   ++Q+ LN++ NA   +    
Sbjct: 974  ITELIDNTLELRSYVLKTANIAVIKQYEPGLPLLTVDPGQMQQVILNLILNAEYSMKKAH 1033

Query: 721  SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
              G + I+ +  + + V L  RD G+GM    L K  +PF          GEGTGLGL L
Sbjct: 1034 EKGTLNITVS-KAGDRVKLSFRDDGLGMPPEILAKLFQPFFTTKEP----GEGTGLGLSL 1088

Query: 781  AKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            +  ++  + G     STP +G    I  P+
Sbjct: 1089 SHGIILEHGGTIRGESTPGEGAEFIIELPV 1118



 Score =  136 bits (342), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 61/544 (11%), Positives = 152/544 (27%), Gaps = 30/544 (5%)

Query: 51  QSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYA 110
           Q NF D     ++      +E  +        + +  ++D+ G   EI++     +G   
Sbjct: 117 QCNFRDITDRKLAEEELHKTEELYREFYQKSPIGYQ-SLDSEGRFIEINQAWLDDMGYQR 175

Query: 111 FKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYS 170
            ++IG    D      ++       + K       +  +    G+   V +  +      
Sbjct: 176 DEVIGHWFGDFLLPDQVELFRQRFSVFKATGNASTEFYMSRKNGS--VVLMAFSGKIARD 233

Query: 171 RNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSV--------EKEKY 222
               F   +    +      +      K   +K+  L E       V          E  
Sbjct: 234 AKGNFK--QTHCTLQDITQKHLAEEAIKENQRKYKALFESISDAVFVCYIESRKWSDEFV 291

Query: 223 DIFSQQSPPPHLRMKNKV-SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLN 281
           ++    S       +  +  S    + +    L  ++       +  +  + +    + +
Sbjct: 292 ELNKMASSMLGYDHEELLKISAKNLFFYASSGLLLKETTDDLYAQHMITRESNLRHKDGH 351

Query: 282 QYTKKQYFG--TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG 339
               +  F    LQ             N    +   ++  +   +        ++ +   
Sbjct: 352 IIPVEITFHLFDLQGRPAVLTLAHDISNRKIAAYELEQSHSRLIKAEQVAGFGYWEFDLS 411

Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399
           +    NPS       +++  +         +    + +  A     L       I     
Sbjct: 412 SGL-VNPSE----GARAIYGLTEDTVTIPFVQMIPVPEYRASLDTALNNLITQNIPYDIE 466

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459
               + +      +      + +  PE     G   +    +  +  + +   +  S  +
Sbjct: 467 FKIKRPSD--WAILYIHSIAEFD--PERNVVFGTIQDITKRKQAEELLRVSEARFRSTFD 522

Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL 519
            +  G AI + +      N    ++ GY  +++           +        L  + + 
Sbjct: 523 QSPIGAAIYDSDLKYRQVNDKFCRMLGYSDKELNSLTVRDITYTDDLDQDIDQLNHLKNG 582

Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAK 575
           D+ +  E       K   +    I +  +  S      Y   + DI+  K+ ++ L   K
Sbjct: 583 DINR-YETDKRYLHKNGSIFWAHISVAIIKDSDGNFLYYLAMIMDITARKEAEDALQKYK 641

Query: 576 KIAE 579
            IAE
Sbjct: 642 LIAE 645



 Score = 97.8 bits (242), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 46/509 (9%), Positives = 133/509 (26%), Gaps = 50/509 (9%)

Query: 93  GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT-LWP 151
           G + +I+  L   +G    +++  R+ ++S   +I  +    D L+R++        L  
Sbjct: 34  GKVTDINPFLLNMLGYTQKEILDKRIWEISVFQNIASSRKSFDDLQRKDYIRYDDFPLLT 93

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
             G    V        +                              + ++ +   ++  
Sbjct: 94  KNGKVQKVEFTSNIYRVGEEK------ILQCNFRDITDRKLAEEELHKTEELYREFYQKS 147

Query: 212 KGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
                    +                 +++V           D ++  +      + +  
Sbjct: 148 PIGYQSLDSEGRFIEINQAWLDDMGYQRDEVIGHWFGDFLLPDQVELFRQRFSVFKATGN 207

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESF-----EYLSHRNHPSLSAYFDEGENLTPE 324
              E + +          + G +  ++K +F                     E +     
Sbjct: 208 ASTEFYMSRKNGSVVLMAFSGKIARDAKGNFKQTHCTLQDITQKHLAEEAIKENQRKYKA 267

Query: 325 TVDKCPIPFFVY------SHGNLFYANPSFLLLTKYKSVDDI----------EIAGGLST 368
             +      FV               N     +  Y   + +            +G L  
Sbjct: 268 LFESISDAVFVCYIESRKWSDEFVELNKMASSMLGYDHEELLKISAKNLFFYASSGLLLK 327

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
                  + +   +   L   D   I      H        ++                 
Sbjct: 328 ETTDDLYAQHMITRESNLRHKDGHIIPVEITFHLFDLQGRPAVLTLAH------------ 375

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
                  +  + +I   ++E    +L    +    G    +    +++ +     ++G  
Sbjct: 376 -------DISNRKIAAYELEQSHSRLIKAEQVAGFGYWEFDLSSGLVNPSEGARAIYGLT 428

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            + +      +       + ++  L  +++ ++   +E   +    +  +L +  I +  
Sbjct: 429 EDTVTIPFVQMIPVPEYRASLDTALNNLITQNIPYDIEFK-IKRPSDWAILYIHSIAEFD 487

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKI 577
           P  +    T+ DI++ KQ +  L  ++  
Sbjct: 488 PERNVVFGTIQDITKRKQAEELLRVSEAR 516



 Score = 93.9 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 32/284 (11%), Positives = 80/284 (28%), Gaps = 18/284 (6%)

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
               +  E       +       +     G +   NP  L +  Y   + ++      ++
Sbjct: 5   RLDLETSELRYRRLFETAQDGILIVDVVSGKVTDINPFLLNMLGYTQKEILDKRIWEISV 64

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
                 S  +      L R D            +         + F          + + 
Sbjct: 65  FQNIASSRKSFDD---LQRKD----YIRYDDFPLLTKNGKVQKVEFTSNIYRVGEEKILQ 117

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
            N    +  D ++ + ++           + +  G   ++ EG  +  N+A     GY  
Sbjct: 118 CNF--RDITDRKLAEEELHKTEELYREFYQKSPIGYQSLDSEGRFIEINQAWLDDMGYQR 175

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
           ++++   F  FL  +   +     +   +     T       S K   ++ +    K   
Sbjct: 176 DEVIGHWFGDFLLPDQVELFRQRFSVFKATGNAST---EFYMSRKNGSVVLMAFSGKIAR 232

Query: 550 FSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
            +         T+ DI++    +  +   ++  +      SD +
Sbjct: 233 DAKGNFKQTHCTLQDITQKHLAEEAIKENQRKYKALFESISDAV 276


>gi|301061389|ref|ZP_07202161.1| PAS domain S-box protein [delta proteobacterium NaphS2]
 gi|300444513|gb|EFK08506.1| PAS domain S-box protein [delta proteobacterium NaphS2]
          Length = 595

 Score =  324 bits (831), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 90/415 (21%), Positives = 182/415 (43%), Gaps = 30/415 (7%)

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMP-QNGIEPEDVDTRINKRKMEIEVMQLCSIL 458
           +  I+   E+  +  F+P        E       +     D R    ++  +  ++ +  
Sbjct: 198 IEQIRKWAESIASGDFLPKPYVKSSGEIEGLYESLGRMADDLRRQIEQVRRQRNEMQAAF 257

Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
            +  +G+  I+ E  +L+ N+  + + G    +   +     +         +++ E L+
Sbjct: 258 SSMVEGVIAIDMEARVLNMNQRAATILGCDPAEARGRGIQEVMRNT---AFYNFVEETLA 314

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKK 576
                  +        +E LL+    I +    +       + D++  ++ +        
Sbjct: 315 ARDTIVRDIPM----GDEGLLNGHGTILRDEAENQIGALFVLDDVTRLRKLE-------- 362

Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
                 + + DF++ VSHEI+TP+TAI GF E +++       +     +   I++  + 
Sbjct: 363 ------NIRRDFVSNVSHEIKTPITAIKGFVETLRDGSVKNPADAE--RFLGIIEKHVDR 414

Query: 637 VLDIVNDLLDISKIE--SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
           +  I+ DLL++SKIE  SGK  L      + + +  A+ +  +   E+ I I  S A ++
Sbjct: 415 LEAIIEDLLNLSKIEQTSGKEGLSLVESQMVDIIHNALQICHVAIAEREIEIDVSCAESV 474

Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELE 754
             +  D   ++Q  +N+L NA+ ++ +GG I IS T   +  + + VRD GVG+    L 
Sbjct: 475 -TLKVDPTLLEQALVNLLDNAVKYSDTGGTIHISVT-EESGSITIAVRDHGVGINKKHLP 532

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +  + F ++  ++  +  GTGLGL + K +V A+ G   + STP +G+   I  P
Sbjct: 533 RLFERFYRVDKARSRQLGGTGLGLAIVKHVVQAHGGHITVESTPGEGSTFSIHLP 587


>gi|323465649|gb|ADX69336.1| Sensor protein [Lactobacillus helveticus H10]
          Length = 618

 Score =  324 bits (831), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 85/400 (21%), Positives = 175/400 (43%), Gaps = 41/400 (10%)

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
           ++  +           ++    +   + E  +L S+L   SDG+   +R G +   N   
Sbjct: 235 DELGQLAKAFNTLSVRIEQSQEES--DSERRRLDSVLSHMSDGVLATDRHGNVSVVNHMA 292

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK-LLS 540
                   ++I+ +P    L           L +  S DL  + ++I +      +  + 
Sbjct: 293 LSYLNADEDEIINRPIAEVLG----------LKDTSSQDLISSQKEIVVTVDPGTRDEII 342

Query: 541 LRIIIKKLPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
           L      +   + +       +HD++E ++ +              + +  F++ VSHE+
Sbjct: 343 LHASFSLIKRVTGFVSGSVCVLHDVTEQQKNE--------------NSQRQFVSNVSHEL 388

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTPLT++  + E +    +         ++     +  + ++ ++NDLL +S+++ G   
Sbjct: 389 RTPLTSLQAYIEALNEGAW--KDPEIAPKFLEVTQQETSRMIRMINDLLSLSRMDRGVSK 446

Query: 657 LHFEPVSLDEAVSEAISLV-------QLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709
           +  E V+L++ VS  ++         +   ++K+  I+    N    +  D   + Q+  
Sbjct: 447 MDLEFVNLNDFVSHILNRFDMIVKTDKNKGHKKKYTIKRELGNQALWVEIDTDKMMQVID 506

Query: 710 NILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
           NI++NAI ++P GG I +  TH+    VIL + D G+G+   +L K    F ++  ++  
Sbjct: 507 NIMNNAIKYSPDGGVITVRLTHS-QGHVILSISDQGLGIPRKDLGKIFDRFYRVDKARSR 565

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
              GTGLGL +AK +V+A+ G+ +  S+  KG+   I  P
Sbjct: 566 AQGGTGLGLAIAKEIVEAHHGRIWADSSEGKGSTFYISLP 605


>gi|210622340|ref|ZP_03293109.1| hypothetical protein CLOHIR_01057 [Clostridium hiranonis DSM 13275]
 gi|210154328|gb|EEA85334.1| hypothetical protein CLOHIR_01057 [Clostridium hiranonis DSM 13275]
          Length = 427

 Score =  324 bits (831), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 92/370 (24%), Positives = 167/370 (45%), Gaps = 31/370 (8%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE-DILRKPFTVFLEQN 504
           ++E + +QL SIL++ S+GI  I+ EG IL  N    K+   P E  +  +  +  +   
Sbjct: 81  ELEYKNLQLRSILKSISNGILAIDIEGNILLINDEAKKMINCPKEVMVEGRNISFAIRNE 140

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHD 560
                   L +I+     +  EK  +    + +   +++    L  +        + + D
Sbjct: 141 L------ILKQIMMFMGSKENEKTVINLD-DGRFFRIKLDPVYLQNNKSIVIGSIVNIED 193

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           ISE  + +              + + DF+A VSHE++TPLT+I GF+E +K      +  
Sbjct: 194 ISERVRAE--------------NMRKDFVANVSHELKTPLTSISGFAETLK--LNENIDK 237

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
                +   ID   N +  ++ D+L +S IE+ K     E ++L         ++ + A 
Sbjct: 238 ETRNRFLTIIDGEANRLRRLIEDILTLSFIENDKKE-EKEAINLYSVYRRVEDMLMISAK 296

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
            K I +      +I  + A+   VKQI LN++ NAI +TP  G + +    T  E  +++
Sbjct: 297 TKNIALACEADESI-SLQANADYVKQIILNLVDNAIKYTPENGAVNVKI-FTEKENAVIK 354

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V DTG+G+   +  +  + F ++  ++     GTGLGL + K +V    G   + S   K
Sbjct: 355 VSDTGMGIPKEDQSRIFERFYRVDKARSREIGGTGLGLAITKHIVMNLGGTISVESELEK 414

Query: 801 GTLIEIIFPL 810
           G+   +  P+
Sbjct: 415 GSTFTVKIPI 424


>gi|307153837|ref|YP_003889221.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306984065|gb|ADN15946.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 1053

 Score =  324 bits (831), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 100/424 (23%), Positives = 180/424 (42%), Gaps = 40/424 (9%)

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
           +P  + ++  E      +  E +       ++     +L   LEA   GI++ + +G + 
Sbjct: 406 VPVNRTDELGELAKSFNMMAEQLQKTFA--QLHNSQHRLSQFLEAVPVGISVHDTKGKLY 463

Query: 476 STNRAVSKLFGYPVE-DILRKPFTVFLEQNTPSVMNHY------LTEILSLDLRQTLEKI 528
             NR   +L G     +   +  T          +  Y      +   L        +  
Sbjct: 464 YANRKSLELLGISSPLEAEMEQLTQAYHTYQAGTLELYPTDALPIARALKGKTTYVEDME 523

Query: 529 TLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKN--------------- 569
                K   ++ L +    +               DI++ KQ +                
Sbjct: 524 LHQLDK---IVPLEVWATPIYDEMGNIVYAIAAFQDITQRKQTEQILADYNRTLEAQVNQ 580

Query: 570 ---KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
              +L+ AK+ AE  +  KS F+A +SHE+R+PL AI+GFS+++         +    E 
Sbjct: 581 RTAELAQAKEKAEVANQTKSTFIANMSHELRSPLNAILGFSQLMAASGDLSAAD---QEN 637

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
              I+RSG  +L+++N++L I+KIE+GK  L+ +   L   + E   +  L A  + + +
Sbjct: 638 VEIINRSGEYLLNLINNILTIAKIEAGKTTLNPKDFDLYHLLGEIDEMFDLEAATRGLKL 697

Query: 687 RTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVILRVRDT 744
                 ++PR +  D   ++Q+ +N+LSNA+ FT  G   + + T   +   ++ RV+DT
Sbjct: 698 NFEIPADVPRYVNTDEVKLRQVLINLLSNALKFTHVGKIGVYVQTEAKTPTTLLFRVQDT 757

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           GVG+   EL+   K F Q  + Q  + +GTGLGL +++  V    G F + S    GT  
Sbjct: 758 GVGIAQSELDLLFKTFSQTQSGQNSQ-DGTGLGLAISRQFVQLMGGDFSVESRVGVGTTF 816

Query: 805 EIIF 808
               
Sbjct: 817 SFTI 820



 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/148 (11%), Positives = 40/148 (27%), Gaps = 8/148 (5%)

Query: 313 AYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKS--VDDIEIAGGLSTL 369
           A     ++   + ++  P+   V+   G L+YAN   L L    S    ++E        
Sbjct: 433 AQLHNSQHRLSQFLEAVPVGISVHDTKGKLYYANRKSLELLGISSPLEAEMEQLTQAYHT 492

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAAS-ARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
             A  L         +               LH +       + +        ++    +
Sbjct: 493 YQAGTLELYPTDALPIARALKGKTTYVEDMELHQLDK----IVPLEVWATPIYDEMGNIV 548

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCS 456
                  +    +  ++ +      L +
Sbjct: 549 YAIAAFQDITQRKQTEQILADYNRTLEA 576


>gi|154688138|ref|YP_001423299.1| YycG [Bacillus amyloliquefaciens FZB42]
 gi|154353989|gb|ABS76068.1| YycG [Bacillus amyloliquefaciens FZB42]
          Length = 611

 Score =  324 bits (831), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 86/376 (22%), Positives = 152/376 (40%), Gaps = 27/376 (7%)

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             +    +   E E  +L S++   +DG+   NR G I+  N    +L     E  L  P
Sbjct: 248 TRELEDAQAMTEGERRKLSSVIAYMTDGVIATNRNGAIILLNSPALELLNVSRETALEMP 307

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCY 554
            T  L           + +         LE        E  +L +   + +         
Sbjct: 308 ITSLLGIKENFTFEDLVEQ----QDSMLLEIE---RDDETTVLRVNFSVIQREHGKIDGL 360

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
              ++D++E ++                  + +F+A VSHE+RTPLT +  + E +    
Sbjct: 361 IAVLYDVTEQEKL--------------DRERREFVANVSHELRTPLTTMRSYLEALAEGA 406

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
           +          +          ++ +VNDLL +SK +S     + E + +   +S  I  
Sbjct: 407 W--ENKDIAPRFLMVTQNETERMIRLVNDLLQLSKFDSKDYQFNREWIHMIRFMSLIIDR 464

Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
            +    E+ +       +    +  D   V Q+  NI+SNA+ ++P GG +  S      
Sbjct: 465 FE-MTKEQHVEFIRELPDRNLYVEIDQDKVTQVLDNIISNALKYSPEGGHVTFSVDVNEK 523

Query: 735 EEVI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
           EE++ + V+D G+G+   ++EK    F ++  ++  +  GTGLGL +AK MV A+ G  +
Sbjct: 524 EELLYISVKDEGIGIPKKDVEKVFDRFYRVDKARTRKLGGTGLGLAIAKEMVQAHGGDIW 583

Query: 794 IFSTPAKGTLIEIIFP 809
             S   KGT I    P
Sbjct: 584 ADSVEGKGTKITFTLP 599


>gi|206969233|ref|ZP_03230188.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           cereus AH1134]
 gi|206736274|gb|EDZ53432.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           cereus AH1134]
          Length = 801

 Score =  324 bits (831), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 102/532 (19%), Positives = 211/532 (39%), Gaps = 47/532 (8%)

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVD-----KCPIPFFVYSHGNLFYANPSFLLL 351
            +  E +      +     +   + T E ++                G++  AN ++  +
Sbjct: 294 GQVIEVVGSTVDITERKKVESELSATKELLESFIKHNLDAITISDREGHILQANKAYEKI 353

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ-WNRENS 410
             + S + I            P + D    + +   +   T  +   RL T++  +  + 
Sbjct: 354 FGWSSQEIIGKRL--------PCVPDFLMEESIKNIQKILTGESVVTRLETVRQRSDGSL 405

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK-------MEIEVMQLCSILEATSD 463
           L ++       +     +  + I  +  + +  +R+       +    M+  +++E  +D
Sbjct: 406 LDVSLTVSPILDVRGNVIALSAICRDISERKQAERERHRLHQQLRDSEMKYRALIEQATD 465

Query: 464 GIAI--INREG---IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
            + +  +N +      +  N    + FGY  E++L   F+  + Q++  ++   L +I  
Sbjct: 466 AVYVVELNEDNAPSRFIEVNPVGCRRFGYSREELLSLSFSNVVPQDSQIIVR-LLEKIKK 524

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578
                TL+   +  T +       + +  L     +     DI+E  + +  L  ++K+A
Sbjct: 525 GQTSFTLQDEYVFPTGKVITTEFSVRVFNLNGKKVFLSISRDITERLKTEELLRKSEKLA 584

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
                        ++HEI  PLTA+ GF +++K+       N     Y N +      + 
Sbjct: 585 VV-----GQLATVMAHEINNPLTAMKGFMQLLKSTE-----NENNQSYINIVSSEIERIE 634

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
            I  + + ++K +  K+  +     +   + + + L+Q  A    I IR      IP I 
Sbjct: 635 SITTEFMAVAKPQVVKIKPN----DISVLMDQVLMLLQPQAMMNNIKIRIDLNPGIPLIS 690

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
            +   +KQ+ +NIL NAI   P GG+I+I      N ++ +R  D G G+    +    +
Sbjct: 691 CEGNQLKQVFVNILKNAIESMPMGGEILIQLNILDNNQLSIRFIDQGCGIPKERIPYLGE 750

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           PF        I+ EG GLGL +   +++ + GK +I S   KGT +E+  P+
Sbjct: 751 PFY------SIKEEGIGLGLMICYKIIETHQGKVFIESEVNKGTTVEVTLPI 796



 Score =  107 bits (268), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 44/286 (15%), Positives = 91/286 (31%), Gaps = 21/286 (7%)

Query: 313 AYFDEGENLTPETVDKCPIPFF----VYSHGNLFYANPSFLLLTKYKSVDDIEI-AGGLS 367
               + +    +TV +     F    V  H      +  F     + S   +      + 
Sbjct: 186 RELKKSKQELADTVHELQGGIFKFKKVGKHFIHTLCDGQFYYQNGFYSEQVVGKSLRTID 245

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
             +  P L          L   +   I        + W  + ++ +         +  + 
Sbjct: 246 ASIVPPHLVPQLMKY--YLQAWEGKEIIFE-----LPWPNDKTIILI--ALRPIKRNGQV 296

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
           +   G   +  + +  + ++      L S ++   D I I +REG IL  N+A  K+FG+
Sbjct: 297 IEVVGSTVDITERKKVESELSATKELLESFIKHNLDAITISDREGHILQANKAYEKIFGW 356

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
             ++I+ K     +           + +IL           T+    +  LL + + +  
Sbjct: 357 SSQEIIGKRL-PCVPDFLMEESIKNIQKIL-TGESVVTRLETVRQRSDGSLLDVSLTVSP 414

Query: 548 LPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
           +               DISE KQ + +     +   ++S  K   L
Sbjct: 415 ILDVRGNVIALSAICRDISERKQAERERHRLHQQL-RDSEMKYRAL 459



 Score = 61.2 bits (147), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 38/286 (13%), Positives = 84/286 (29%), Gaps = 23/286 (8%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG-KTT 148
           D  G++ + ++   K  G  + ++IG RL  V D L  +   +I  +L  ++     +T 
Sbjct: 338 DREGHILQANKAYEKIFGWSSQEIIGKRLPCVPDFLMEESIKNIQKILTGESVVTRLETV 397

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +G+ L V + ++  PI              I               RL ++     
Sbjct: 398 RQRSDGSLLDVSLTVS--PILDVRGNVIALS--AICRDISERKQAERERHRLHQQLRDSE 453

Query: 209 EIKKGHSSVEKEKYDIFSQQS-----------PPPHLR---MKNKVSSLTEY-YAHKDDV 253
              +       +   +                P    R    + ++ SL+      +D  
Sbjct: 454 MKYRALIEQATDAVYVVELNEDNAPSRFIEVNPVGCRRFGYSREELLSLSFSNVVPQDSQ 513

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
           +       +   ++S   Q+++        T +               +LS     +   
Sbjct: 514 IIVRLLEKIKKGQTSFTLQDEYVFPTGKVITTEFSVRVFN--LNGKKVFLSISRDITERL 571

Query: 314 YFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVD 358
             +E    + +      +     +   N   A   F+ L K    +
Sbjct: 572 KTEELLRKSEKLAVVGQLATVMAHEINNPLTAMKGFMQLLKSTENE 617


>gi|27468286|ref|NP_764923.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           epidermidis ATCC 12228]
 gi|251811086|ref|ZP_04825559.1| possible histidine kinase [Staphylococcus epidermidis BCM-HMP0060]
 gi|282875887|ref|ZP_06284754.1| sensor histidine kinase/response regulator [Staphylococcus
           epidermidis SK135]
 gi|293366361|ref|ZP_06613040.1| sensor histidine kinase PhoR [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|27315832|gb|AAO04967.1|AE016748_201 alkaline phosphatase synthesis sensor protein [Staphylococcus
           epidermidis ATCC 12228]
 gi|251805383|gb|EES58040.1| possible histidine kinase [Staphylococcus epidermidis BCM-HMP0060]
 gi|281294912|gb|EFA87439.1| sensor histidine kinase/response regulator [Staphylococcus
           epidermidis SK135]
 gi|291319486|gb|EFE59853.1| sensor histidine kinase PhoR [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329737291|gb|EGG73545.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Staphylococcus epidermidis VCU028]
          Length = 565

 Score =  324 bits (831), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 88/397 (22%), Positives = 184/397 (46%), Gaps = 31/397 (7%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRK--MEIEVMQLCSILEATSDGIAIINREGIIL 475
                   +      +   D+  R+ K     +I+  +L + LE     + +I++ G I+
Sbjct: 191 VRVPESNVKETRALFVTTNDLARRLQKLNNSQKIQSNRLKTTLENIPSSVLMIDKHGEIV 250

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
             N A  ++F  P + +  K +  F++ +   ++          +     +     +   
Sbjct: 251 VANHAYYQVFN-PDQMVENKSYIGFIDDSIEKLIIESFR----TEKVIYEQLEVAINNVH 305

Query: 536 EKLLSLRIIIKKLPFS---SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
            K   +  I              + +HDI+  ++ +              + + +F+A V
Sbjct: 306 TKYFDVSCIPILTKSKKNLQGMVVVLHDITNLQKLE--------------NLRREFVANV 351

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIE 651
           SHE++TP+T+I GF+E +     G   + + ++ + N I +  N +  +V DLLD+S IE
Sbjct: 352 SHELKTPITSIKGFAETLIE---GAKNDEQSLDMFLNIILKESNRIESLVTDLLDLSHIE 408

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
             K  L    ++L E     I  +Q  A  KRI I++    ++  I A    + Q+  N+
Sbjct: 409 QQK-ELEINYMNLSELAINIIDNLQTQAYNKRIKIQSEIEKDVI-IEAHENKIAQVITNL 466

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           LSNAI+++    ++I+   + ++ +V L ++D G+G++  + ++  + F ++  ++    
Sbjct: 467 LSNAINYSSEDNKVIVRV-YRNDNKVYLEIQDYGIGISETDQKRIFERFYRVDKARSRDS 525

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            GTGLGL + K +V+A+ G+  + S P KG++ +++F
Sbjct: 526 GGTGLGLSITKHIVEAHNGRIDVKSAPGKGSIFKVLF 562


>gi|323528813|ref|YP_004230965.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1001]
 gi|323385815|gb|ADX57905.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1001]
          Length = 882

 Score =  324 bits (830), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 106/747 (14%), Positives = 228/747 (30%), Gaps = 44/747 (5%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTW 143
             W  DA G +   +    K +G+       +          +    +     L    + 
Sbjct: 13  LVWTADAGGVVTYANIACRKYLGHPFAPNTAIHWDQFVLEDDVKKVLDAWRSALTAGESA 72

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                L   +G   Y    L   PI+   R  SG  G  +              +  +++
Sbjct: 73  KVNARLERFDG--QYRWHKLRIQPIFDDARVVSGACGIAM--DIHDFVKAGEAYEVGERR 128

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQ----QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
                +  +  +                       R + +V     +    +        
Sbjct: 129 LRFALDAARAGAWEWDMGSRTARISAQLAQIYGLERQEAEVPLQWLFDRIPESHRAWFAR 188

Query: 260 PLLTSEESSLPEQEDF--HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS----LSA 313
            L       +P + DF     +  +   +    T   +              +       
Sbjct: 189 ELTARLHECVPFELDFPIELEDGRRSWLRTRGETDCGSGTTIERVFGVTYDITEQHDAQI 248

Query: 314 YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
             +  E      V+      ++           ++   T    +        L  +    
Sbjct: 249 ERERSEQRYRALVEASSELTWIADAAGHTNQLGNWHSFTPQDGLTA--GCEWLDLVHPDD 306

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
           +         ++  +   +          ++    +   M+       +          +
Sbjct: 307 EACARTTWSNIVKAQRPGSMT------FRLRRRDGSWRTMSARAAPLRDDDGTLREWFCM 360

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEA--TSDGIAIINREGIILSTNRAVSKLFGYPVE- 490
             +  D R     +E   ++L   + A   + G   ++    +     +V  L G P   
Sbjct: 361 ATDVTDERAAAAALEERNLRLQVAMRAARMTIGYLSLD-SWTVCW--DSVDALPGVPAGT 417

Query: 491 -DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
             +        +     + ++  +  +          +  +    EE  L  + ++++  
Sbjct: 418 IALPYDAALHRVHAEDRAAVDAAMRRVALSGEFDKPLEFRIMMHGEESWLQSQAVLQRDA 477

Query: 550 FSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
                    +  DI++ K  +  L        +    K +FLA ++HE+R PL  +    
Sbjct: 478 DGKPWRVIASAVDITQRKTLELAL-------RETDRRKDEFLAMLAHELRNPLAPMRNAI 530

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
            +++ +R   + +   +   +   R  + +  +V+DLL++S+I  G++ L  EPV L  A
Sbjct: 531 ALLRRERESAMNSCELVGMLS---RQVDHMAQLVDDLLEVSRITHGRIVLRREPVLLGTA 587

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727
           +  A+  V   A  +   +          + AD   + QI +N+L+NA  +T  GG + +
Sbjct: 588 IYGALETVSSMAASRGQHLTVKLPPAPVWLHADPLRLSQIFVNVLNNACKYTDPGGSVCV 647

Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
            T         + + D G G++   L      F Q   +      G G+GL L K +V+ 
Sbjct: 648 -TALADERFAAVTIEDNGSGISPDLLPHIFDLFAQGERTLDRAHGGLGIGLSLVKKLVEL 706

Query: 788 NMGKFYIFS-TPAKGTLIEIIFPLYDT 813
           + G   I S  P +G  + I  PL   
Sbjct: 707 HGGTIDIASPGPGRGATVSIRLPLSHA 733



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/130 (11%), Positives = 35/130 (26%), Gaps = 2/130 (1%)

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           I +     +   +  G++   N A  K  G+P        +  F+ ++    +       
Sbjct: 6   IADQVPALVWTADAGGVVTYANIACRKYLGHPFAPNTAIHWDQFVLEDDVKKVLDAWRSA 65

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHA 574
           L+      +         + +   LRI          S       DI ++ +        
Sbjct: 66  LTAGESAKVNARLERFDGQYRWHKLRIQPIFDDARVVSGACGIAMDIHDFVKAGEAYEVG 125

Query: 575 KKIAEKESSH 584
           ++        
Sbjct: 126 ERRLRFALDA 135


>gi|256024215|ref|ZP_05438080.1| aerobic respiration control sensor protein ArcB [Escherichia sp.
           4_1_40B]
          Length = 778

 Score =  324 bits (830), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 86/438 (19%), Positives = 180/438 (41%), Gaps = 21/438 (4%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L +           L  +Q     +     I   +  +         ++ E
Sbjct: 81  EESRQRLSRLVQKLEEMRERDLSL-NVQLKDNIAQLNQEIAVREKAEAELQETFGQLKIE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             +    + ++E +   L S L+A+ D +   N +      NRA+  L G   + ++   
Sbjct: 140 IKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCY 554
                     + +     ++   ++  T E+        +    +R +    ++      
Sbjct: 200 PADVYSPEAAAKVIETDEKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGL 259

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+        +   E+ S  K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 260 MGFGRDITERKR-------YQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE 312

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     +Y   I  S   + +I ND++D+ K+E  K+ L  +PV     +++  +L
Sbjct: 313 LTA----EQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENL 368

Query: 675 VQLYANEKRILIRTSFANNIP---RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
             L A +K   +R +    +P   +++ D   ++QI  N++SNA+ FT  G Q+ +   +
Sbjct: 369 SALQAQQKG--LRFNLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQG-QVTVRVRY 425

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMG 790
              + +   V D+G+G+   EL+K    + Q+ +S   +   GTG+GL +++ +     G
Sbjct: 426 DEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGG 485

Query: 791 KFYIFSTPAKGTLIEIIF 808
              + S   KG+   +  
Sbjct: 486 DITVTSEQGKGSTFTLTI 503


>gi|298528945|ref|ZP_07016348.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298510381|gb|EFI34284.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 1209

 Score =  324 bits (830), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 95/391 (24%), Positives = 170/391 (43%), Gaps = 40/391 (10%)

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFG-YPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           +L+A  D + +++    I+  NRA   L   +  E++           +   +    +  
Sbjct: 403 VLDAIPDPVFVVDSNMHIMHANRATMDLAEEHDPEELRYYTCRQIFNADCCGLPECPIAT 462

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKL 571
           +   +   T + I      E +++ +R   K L         Y     D++   +++  L
Sbjct: 463 LQRGEDVDTRQ-IIRWDRGEGRVMYIRPRAKVLRDREGNIAGYLELAQDVTALMEKEQDL 521

Query: 572 SHAK--------------KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
                             + A + S  KS+FLA +SHEIRTP+ AI+G +E+  N    P
Sbjct: 522 EQKNQELMVLNEKYQEAARQAREASRAKSEFLANMSHEIRTPMNAIMGMTELAGNTELTP 581

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
                  EY + I  S   +L ++ND+LD SKIE+GK++L +   SL E V  A+  V +
Sbjct: 582 ----EQKEYLSIIQNSSESLLALLNDILDFSKIEAGKLDLEYIDFSLRETVHNAVYSVAM 637

Query: 678 YANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTH---- 731
            A++K + +      ++      D   ++Q+ +N++ NAI FT  G  Q+ +        
Sbjct: 638 LAHQKGVELVVRVEPDMEDGFKGDPDRLRQVLVNLVGNAIKFTQQGEVQVEVRLAAAEEM 697

Query: 732 -----TSNEE-----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
                          ++ RV DTG G+   + E   + F Q   S + +  GTGLGL ++
Sbjct: 698 LQHAARDEGYLSKLQILFRVVDTGSGIAWDKQEGIFEAFVQADGSSRRKYGGTGLGLSIS 757

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
             +V+   G+ ++ S P +G+    + PL  
Sbjct: 758 SRLVEMMKGRIWMQSEPGRGSTFSFVLPLEP 788



 Score = 44.6 bits (104), Expect = 0.077,   Method: Composition-based stats.
 Identities = 21/184 (11%), Positives = 49/184 (26%), Gaps = 10/184 (5%)

Query: 274 DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF 333
                       K+  G   +            +   L   + E        +D  P P 
Sbjct: 352 RIREQIQGIQENKESLGRRLDPGSRDELGQLTSDFNRLMDRYHEMLTFNTMVLDAIPDPV 411

Query: 334 FVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
           FV     ++ +AN + + L +    +++        + +A            +    D  
Sbjct: 412 FVVDSNMHIMHANRATMDLAEEHDPEELR-YYTCRQIFNADCCGLPECPIATLQRGEDVD 470

Query: 393 CIAASARLHTIQWNRENSLAMTFIPF--EKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450
                     I+W+R     M   P      ++         +  +       ++ +E +
Sbjct: 471 TR------QIIRWDRGEGRVMYIRPRAKVLRDREGNIAGYLELAQDVTALMEKEQDLEQK 524

Query: 451 VMQL 454
             +L
Sbjct: 525 NQEL 528


>gi|37521423|ref|NP_924800.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
            7421]
 gi|35212420|dbj|BAC89795.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
            7421]
          Length = 1241

 Score =  324 bits (830), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 120/664 (18%), Positives = 229/664 (34%), Gaps = 56/664 (8%)

Query: 185  HVNRVDN-DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL 243
               R+ + D     +     F                     S   P P     ++ S+ 
Sbjct: 596  QDIRLYDGDRERRVRIDVAPFRSASGQTHFLVLFADTPMVEVSAPLPGPRSAAADRQSAQ 655

Query: 244  TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303
             +        L  ++  L T+ E S    ++    N    +  +   +     + + E +
Sbjct: 656  QQRLLELQQELTAKEEYLRTAIEESEAVNQNLRVANEEILSSNEELQSTNEELQTAKEEI 715

Query: 304  SHRNHP---------SLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTK 353
               N             +   D   N     +    +P   + S   +    P    L  
Sbjct: 716  QSTNEELHTINDELQRRNRELDRLGNDLQNLLASTRLPIVMLDSELRIRRFTPQAGELLH 775

Query: 354  YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
            + S D       ++  L  P L +                      +  +Q    +   +
Sbjct: 776  FVSADVGRPVRDINHRLSVPDLPERVLEVIASRRI----------HIQEVQDRGGHWHEL 825

Query: 414  TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
               P+   +   E      +  +   ++    +++       +I+E   + + +++ E  
Sbjct: 826  CIRPYHTLDGATE--GAVLVLVDIDQSKRAVEEVKAARDYAEAIVETVGEPLIVLDAELS 883

Query: 474  ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP-SVMNHYLTEILSL-DLRQTLEKITLG 531
             ++ NRA  +LF    + I  +              +   L  +L      Q  E     
Sbjct: 884  AVTANRAFYELFETHPDQIEGRSLFEVSGGQWNLPQLREALEGVLQGDGRVQDFEVDRDF 943

Query: 532  STKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKI-------AEKES 582
                 K+L L                L++ D++  +  + + S            AE  +
Sbjct: 944  ERLGRKILLLNARHMPFYAGGPRQILLSVSDVTARRLLEGERSELLAQSEAARRDAEAAN 1003

Query: 583  SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
              K +FLA +SHE+RTPL  IIGFS++++  +  P    +  +    I+R G L   +++
Sbjct: 1004 RSKDEFLATLSHELRTPLNPIIGFSQLLRRGKCDP---AQTAQALEVIERCGKLQAQLID 1060

Query: 643  DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702
            D+LDIS+I SGK+++    + L   V  A+  V      K I I T  A   P ++AD  
Sbjct: 1061 DMLDISRIISGKLHVVMRRIDLVPVVGAAVEAVDAIGRAKSIRIETVCAPA-PPVMADST 1119

Query: 703  SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
             ++Q+  N+L+NA+ FTP GG++ +    T+   V L V DTG+G+    L K    F Q
Sbjct: 1120 RMQQVVWNLLTNAVKFTPEGGRVGVRLEGTAAG-VRLTVSDTGMGIAPEFLPKMFDRFAQ 1178

Query: 763  IPNSQQIRG--------EGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFPLYDT 813
               S+                      +++++ + G     S    +G++  +  P    
Sbjct: 1179 GDGSRTRTQGGLGLGLYL--------VRSLIELHGGTVDAHSAGEGRGSVFTVALPAAPP 1230

Query: 814  SHPH 817
               H
Sbjct: 1231 QPEH 1234


>gi|307823177|ref|ZP_07653407.1| multi-sensor signal transduction histidine kinase [Methylobacter
           tundripaludum SV96]
 gi|307735952|gb|EFO06799.1| multi-sensor signal transduction histidine kinase [Methylobacter
           tundripaludum SV96]
          Length = 900

 Score =  324 bits (830), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 119/768 (15%), Positives = 249/768 (32%), Gaps = 69/768 (8%)

Query: 85  FTWNIDAHG--YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN- 141
           F + + A G       SE +          +          ++H D    IG  +++   
Sbjct: 161 FQFRLRADGSSCFPFASEAICDIFRLSPEDV-REDASKAFALVHPDDYGSIGPAIRKSAR 219

Query: 142 ---TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
               W+ +  L   +GT     +   ALP    +         G V              
Sbjct: 220 NLTPWHHEYRLRFADGT--ERWLFGNALPQREEDGSVL---WHGFVTDISERKRMEEKLH 274

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS----------------- 241
             D     + +      +V   +  I +           N +                  
Sbjct: 275 DSDALNVSILDSLASRIAVLDAQGVIVAVNKAWRQFAKDNDLPESRQNMLGLNYLDICKN 334

Query: 242 SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN-SKESF 300
             ++ + +  +  +     +LT E  +    E        Q         LQ +      
Sbjct: 335 GCSQPHCNDVNPAQAGIAAVLTGERETFN-LEYPCRSPTQQRWFHMNVLPLQGSHRGVVV 393

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDD 359
            + +      +       E      ++  P+P  +     N+ + N +F+    Y   D 
Sbjct: 394 SHENITERKLMEDELKASEAKFRSIIEVSPVPMALNDEQWNITFLNQAFVQTFGYNVDDI 453

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD-RTCIAASARLHTIQWNRENSLAMTFIPF 418
             +A   S     P              +   +           I+ N  N   +     
Sbjct: 454 PTVADWQSKAYPDPDYRRWVDTTWQSALKKTKQEQTDFPPMELAIRCNNNNIKTVLASAA 513

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
                         I  +    +  +        +L SI  A+ +GI   +   II+S N
Sbjct: 514 AI--HHDFAGVHLVIMYDITQRKQIEA-------KLNSIFNASVEGIITFDMSNIIISAN 564

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
            AV  +FGY  ED++       +   +P  M+   +   +  + Q  E    G  K+   
Sbjct: 565 AAVEAIFGYKPEDLVGCNINKLM-PASPKEMSDGDSSQAAESIGQIQEIE--GIHKDGSA 621

Query: 539 LSLRIIIKK--LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH--KSDFLARVSH 594
           + L + I +  +     ++  + D+S  K  + +           +      +  + ++H
Sbjct: 622 VPLDLSIAEFSIENEHYFTHIVRDVSLRKHREQQDKEHLDELAHVTRLGLMGEMASGIAH 681

Query: 595 EIRTPLTAIIGFSE---VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           EI  PL AI  +++    + N     L   +  E      +       I++ + +  K  
Sbjct: 682 EINQPLAAISSYTQVSLNLINTEHPDLV--KLAEILYKTQQQALRAGRIIHRMREFVKSH 739

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
           + +        +++  + EA+ L      +  I +     NN+P I  D   ++Q+ +N+
Sbjct: 740 AKQ----RSTANINNLIHEAVGLCIDELKQNDIRLTFELTNNLPTIYVDHVQIEQVIINL 795

Query: 712 LSNAIHFT-----PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
           + N++            Q+ I +  T N ++ +RV+D G G+   + +  + PF      
Sbjct: 796 IRNSVDALLNLPEKRQRQLTIHSRLTLNNDIQVRVKDNGPGLDEEQQQNILTPFYTT--- 852

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
              + +G G+GL +++++++A+ G  +  S   KGT +    P+   S
Sbjct: 853 ---KTDGMGMGLSISRSLIEAHEGTLHFNSHSGKGTTMYFTLPIRRKS 897


>gi|148658529|ref|YP_001278734.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp.
            RS-1]
 gi|148570639|gb|ABQ92784.1| GAF sensor signal transduction histidine kinase [Roseiflexus sp.
            RS-1]
          Length = 2153

 Score =  324 bits (830), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 107/614 (17%), Positives = 225/614 (36%), Gaps = 34/614 (5%)

Query: 218  EKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHT 277
            E  +            +      + +    A  +  ++     L  + +    E++    
Sbjct: 1544 EDAQIAFALASQAAQAIHNARLFAEVQRATAELEQRVQERTAELKQTNDQLAAERDRLQA 1603

Query: 278  I---NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF 334
            +    L          TL    + +   +  R    +      G  +    ++       
Sbjct: 1604 LHTITLELTASLDLQTTLNRALELASRAVGARRGSIMLKDLKSGTLICRAVLNT--DGSV 1661

Query: 335  VYSHGNLFYANPSFL--LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
               H  + + +   L   + ++K    I      +  L     +++          +   
Sbjct: 1662 EAKHFPISFGDKKGLSDWVMRHKKAACIGDVLQDNRWLQEEGRAEDVRSVIAAPLMAQED 1721

Query: 393  CIAASARLHTIQ--WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450
             I            + ++    +T I  E A           I     +      +   E
Sbjct: 1722 PIGVLIVTSAETNFFKQDQMQLLTTIANEVAIFINNATLYTIINEIATERSDLLLQQREE 1781

Query: 451  VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
              +  +IL++  +G+ +++    I+  N A  ++ G P   ++ +P T   E +  S + 
Sbjct: 1782 NSKNQAILQSLGEGVIVVDGGRKIVLYNAASEQILGIPATFVVDQPLTRIAEYHNGSTVV 1841

Query: 511  HYLTEILSL---------DLRQTLEKITLGSTKEEKLLSLRII-IKKLPFSSCYSLTMHD 560
                 I            +  +   ++       + ++      +          + +HD
Sbjct: 1842 ERAKRIYEGLQQGLQALTETPKNHNRVLELPEPTQSIMLNFAPWVGPRNAIYGSVIVLHD 1901

Query: 561  ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
            I+                 +    K DF++ VSHE+RTPLT+I G+ +++     GPL N
Sbjct: 1902 ITR--------------EVEADRAKRDFISSVSHELRTPLTSIKGYVDLMLLGANGPL-N 1946

Query: 621  PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
                +    +  + N ++D++ND+L+I +I+S K+ L FE V + +   +    ++    
Sbjct: 1947 EEQKKSLGVVKNNANRLMDLINDILEIGRIDSDKIQLTFEKVVIGDIFRDVEQTLRAEIK 2006

Query: 681  EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
             KR+      A + P + AD R + QI LN+ SNA+ +T   G + +         + + 
Sbjct: 2007 RKRLSFTFDVAADTPPVFADKRRLTQIVLNLASNAVKYTYPEGIVKLRAGLNPAGLLQVD 2066

Query: 741  VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
            V D GVG++  + +   + F +  N  +    GTGLGL +AK+ V+ + G+ ++ S   K
Sbjct: 2067 VIDNGVGISPEQQQHLFRRFYRADNPLRDEAGGTGLGLSIAKSFVELHGGQMWVESDLGK 2126

Query: 801  GTLIEIIFPLYDTS 814
            G+    I PL  ++
Sbjct: 2127 GSTFSFIIPLRPST 2140


>gi|15644402|ref|NP_229454.1| sensor histidine kinase HpkA [Thermotoga maritima MSB8]
 gi|4982228|gb|AAD36721.1|AE001807_12 sensor histidine kinase HpkA [Thermotoga maritima MSB8]
 gi|1575578|gb|AAC44437.1| histidine protein kinase [Thermotoga maritima]
          Length = 412

 Score =  324 bits (830), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 84/400 (21%), Positives = 171/400 (42%), Gaps = 29/400 (7%)

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII 474
                     P       ++    + +    ++E+      +IL + S+ I I++REG I
Sbjct: 34  LSDMLGEKGVPPLYLFERLKKYVDNLKETISRVEVSRDNFLTILNSLSEPIFILDREGKI 93

Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
              N    +L    +     +P+    E      +N  + E +  +  Q           
Sbjct: 94  TFLNEIARELVQGRINP-EGRPYYEIFEDYY---INEMVEETIKSEEPQEGTL-VTYVGN 148

Query: 535 EEKLLSLRIIIKKLPFSS-CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
           E+K   +++I  +L      + +  HD+++ ++                  + +F+A VS
Sbjct: 149 EKKYFHVKVIPVELKSGDKIFVILFHDVTKERKLDE--------------MRREFIATVS 194

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HE+RTPLT+I G++E +               +   I+     +  ++NDLLD+ KIE  
Sbjct: 195 HELRTPLTSIHGYAETLLEDDL--ENKELVKRFLKIIEEESARMTRLINDLLDLEKIEES 252

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713
           + N   + V L E +     ++Q  A E  + +     + +  +  +   + Q+ LN++ 
Sbjct: 253 EANFEMKDVDLCEVIEYVYRIIQPIAEENEVDLIVECEDVV--VRGNKERLIQMLLNLVD 310

Query: 714 NAIHFT---PSG-GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
           NA+ +T     G  ++ +   + + + V++ V DTG G+      +  + F ++  ++  
Sbjct: 311 NAVKYTSLKEKGEKKVWVR-AYDTPDWVVVEVEDTGPGIPKEAQSRIFEKFYRVDKARSR 369

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +  GTGLGL + K +VD + GK  + S   +GTL+ ++ P
Sbjct: 370 KMGGTGLGLTIVKTIVDKHGGKIEVESEINQGTLMRVLLP 409


>gi|297518051|ref|ZP_06936437.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           OP50]
          Length = 724

 Score =  324 bits (830), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 86/438 (19%), Positives = 180/438 (41%), Gaps = 21/438 (4%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L +           L  +Q     +     I   +  +         ++ E
Sbjct: 81  EESRQRLSRLVQKLEEMRERDLSL-NVQLKDNIAQLNQEIAVREKAEAELQETFGQLKIE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             +    + ++E +   L S L+A+ D +   N +      NRA+  L G   + ++   
Sbjct: 140 IKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCY 554
                     + +     ++   ++  T E+        +    +R +    ++      
Sbjct: 200 PADVYSPEAAAKVIETDEKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGL 259

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+        +   E+ S  K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 260 MGFGRDITERKR-------YQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE 312

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     +Y   I  S   + +I ND++D+ K+E  K+ L  +PV     +++  +L
Sbjct: 313 LTA----EQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENL 368

Query: 675 VQLYANEKRILIRTSFANNIP---RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
             L A +K   +R +    +P   +++ D   ++QI  N++SNA+ FT  G Q+ +   +
Sbjct: 369 SALQAQQKG--LRFNLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQG-QVTVRVRY 425

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMG 790
              + +   V D+G+G+   EL+K    + Q+ +S   +   GTG+GL +++ +     G
Sbjct: 426 DEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGG 485

Query: 791 KFYIFSTPAKGTLIEIIF 808
              + S   KG+   +  
Sbjct: 486 DITVTSEQGKGSTFTLTI 503


>gi|15803750|ref|NP_289784.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 EDL933]
 gi|15833343|ref|NP_312116.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. Sakai]
 gi|168751616|ref|ZP_02776638.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4113]
 gi|168754192|ref|ZP_02779199.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4401]
 gi|168763747|ref|ZP_02788754.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4501]
 gi|168769066|ref|ZP_02794073.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4486]
 gi|168777265|ref|ZP_02802272.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4196]
 gi|168781354|ref|ZP_02806361.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4076]
 gi|168786096|ref|ZP_02811103.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC869]
 gi|168800924|ref|ZP_02825931.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC508]
 gi|208808181|ref|ZP_03250518.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4206]
 gi|208813912|ref|ZP_03255241.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4045]
 gi|208820710|ref|ZP_03261030.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4042]
 gi|209397926|ref|YP_002272680.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4115]
 gi|217327107|ref|ZP_03443190.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. TW14588]
 gi|254795159|ref|YP_003079996.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. TW14359]
 gi|261228221|ref|ZP_05942502.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli O157:H7 str. FRIK2000]
 gi|261255077|ref|ZP_05947610.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli O157:H7 str. FRIK966]
 gi|17366312|sp|P58363|ARCB_ECO57 RecName: Full=Aerobic respiration control sensor protein ArcB
 gi|12517831|gb|AAG58344.1|AE005549_1 aerobic respiration sensor-response protein; histidine protein
           kinase/phosphatase, sensor for arcA [Escherichia coli
           O157:H7 str. EDL933]
 gi|13363562|dbj|BAB37512.1| aerobic respiration sensor-response protein [Escherichia coli
           O157:H7 str. Sakai]
 gi|187767463|gb|EDU31307.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4196]
 gi|188014362|gb|EDU52484.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4113]
 gi|189001033|gb|EDU70019.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4076]
 gi|189358652|gb|EDU77071.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4401]
 gi|189361737|gb|EDU80156.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4486]
 gi|189366120|gb|EDU84536.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4501]
 gi|189373850|gb|EDU92266.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC869]
 gi|189376853|gb|EDU95269.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC508]
 gi|208727982|gb|EDZ77583.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4206]
 gi|208735189|gb|EDZ83876.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4045]
 gi|208740833|gb|EDZ88515.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4042]
 gi|209159326|gb|ACI36759.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4115]
 gi|209757940|gb|ACI77282.1| aerobic respiration sensor-response protein [Escherichia coli]
 gi|209757942|gb|ACI77283.1| aerobic respiration sensor-response protein [Escherichia coli]
 gi|209757946|gb|ACI77285.1| aerobic respiration sensor-response protein [Escherichia coli]
 gi|217319474|gb|EEC27899.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. TW14588]
 gi|254594559|gb|ACT73920.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli O157:H7 str. TW14359]
 gi|320189563|gb|EFW64222.1| Aerobic respiration control sensor protein arcB [Escherichia coli
           O157:H7 str. EC1212]
 gi|326337911|gb|EGD61745.1| Aerobic respiration control sensor protein arcB [Escherichia coli
           O157:H7 str. 1125]
 gi|326347480|gb|EGD71205.1| Aerobic respiration control sensor protein arcB [Escherichia coli
           O157:H7 str. 1044]
          Length = 778

 Score =  324 bits (830), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 86/438 (19%), Positives = 180/438 (41%), Gaps = 21/438 (4%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L +           L  +Q     +     I   +  +         ++ E
Sbjct: 81  EESRQRLSRLVQKLEEMRERDLSL-NVQLKDNIAQLNQEIAVREKAEAELQETFGQLKIE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             +    + ++E +   L S L+A+ D +   N +      NRA+  L G   + ++   
Sbjct: 140 IKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCY 554
                     + +     ++   ++  T E+        +    +R +    ++      
Sbjct: 200 PADVYSPEAAAKVIETDEKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGL 259

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+        +   E+ S  K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 260 MGFGRDITERKR-------YQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE 312

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     +Y   I  S   + +I ND++D+ K+E  K+ L  +PV     +++  +L
Sbjct: 313 LTA----EQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENL 368

Query: 675 VQLYANEKRILIRTSFANNIP---RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
             L A +K   +R +    +P   +++ D   ++QI  N++SNA+ FT  G Q+ +   +
Sbjct: 369 SALQAQQKG--LRFNLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQG-QVTVRVRY 425

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMG 790
              + +   V D+G+G+   EL+K    + Q+ +S   +   GTG+GL +++ +     G
Sbjct: 426 DEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGG 485

Query: 791 KFYIFSTPAKGTLIEIIF 808
              + S   KG+   +  
Sbjct: 486 DITVTSEQGKGSTFTLTI 503


>gi|17230389|ref|NP_486937.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17131991|dbj|BAB74596.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 646

 Score =  324 bits (830), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 106/516 (20%), Positives = 199/516 (38%), Gaps = 27/516 (5%)

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSV--DDIEIAGG 365
                    +       +  P   +VY        Y N     L  Y      D+     
Sbjct: 137 RSEEQLHNSQKFIKRIAETTPGILYVYDLVEKRNVYLNGKVGDLLGYTPQTIQDLGKEFL 196

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
           +  L+    L     +        D   I    R+H    N       +       N   
Sbjct: 197 I-KLMHPEDLVQLPQVFQQFDSAKDGDIIEHEYRMH--HANGGWCWFFSRNSVFTRNADG 253

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKL 484
                 G   +    +  + ++     +      A +  I   + ++G +  T   ++++
Sbjct: 254 SPRQIVGTAFDITARKQVEEELRSSNERFRLAAAAINALIYEWDVKKGTVTRT-EGLTRI 312

Query: 485 FGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
            GY VE+     + +   +       +      +     R T E       K+   +  +
Sbjct: 313 LGYSVEEATPTIEWWQEQIHPEDQDFLVQQFQNLPVNQNRYTFEYRIRHKNKQYLYVLDQ 372

Query: 543 IIIKKLPFSS--CYSLTMHDISEWKQEKNKLSH-------AKKIAEKESSHKSDFLARVS 593
            +I +           +  DIS+ K+ + + +        A+  AE  +  K +F+A VS
Sbjct: 373 GVITRDENGQPVRVVGSTTDISDRKRAETERNQLLQLEKLARAEAEAANHTKDEFVAMVS 432

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           H++R+PL AI+G+S++++ ++        +      I+R+      ++ DLLD+S++  G
Sbjct: 433 HDLRSPLNAILGWSQLLRTRQLDETT---FTRALETIERNAQSQSKLLEDLLDMSRVLRG 489

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713
           K+ L F  V L   +  AI      A  K I +++    +IP I  D+  + Q+  N+LS
Sbjct: 490 KLQLEFCQVDLAAIIGVAIETAYPSAKAKNIHLKSVIDESIPLIPGDINRLLQVLGNLLS 549

Query: 714 NAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
           NAI FTP  GQI +  ++T + E  + V DTG+G+ +  L      + Q     Q +  G
Sbjct: 550 NAIKFTPPEGQITVQLSYTDS-EAHITVTDTGIGIKSEFLPYVFDRYRQAD--CQHKQHG 606

Query: 774 TGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIF 808
            GLGL +A+ +++ + G  ++ S    +GT   I  
Sbjct: 607 LGLGLAIARYLIELHGGAIHVTSPGEGQGTTFTIKL 642


>gi|323979073|gb|EGB74151.1| hsp90-like protein [Escherichia coli TW10509]
          Length = 778

 Score =  324 bits (830), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 86/438 (19%), Positives = 180/438 (41%), Gaps = 21/438 (4%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L +           L  +Q     +     I   +  +         ++ E
Sbjct: 81  EESRQRLSRLVQKLEEMRERDLSL-NVQLKDNIAQLNQEIAVREKAEAELQETFGQLKIE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             +    + ++E +   L S L+A+ D +   N +      NRA+  L G   + ++   
Sbjct: 140 IKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCY 554
                     + +     ++   ++  T E+        +    +R +    ++      
Sbjct: 200 PADVYSPEAAAKVIETDEKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGL 259

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+        +   E+ S  K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 260 MGFGRDITERKR-------YQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE 312

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     +Y   I  S   + +I ND++D+ K+E  K+ L  +PV     +++  +L
Sbjct: 313 LTA----EQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENL 368

Query: 675 VQLYANEKRILIRTSFANNIP---RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
             L A +K   +R +    +P   +++ D   ++QI  N++SNA+ FT  G Q+ +   +
Sbjct: 369 SALQAQQKG--LRFNLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQG-QVTVRVRY 425

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMG 790
              + +   V D+G+G+   EL+K    + Q+ +S   +   GTG+GL +++ +     G
Sbjct: 426 DEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGG 485

Query: 791 KFYIFSTPAKGTLIEIIF 808
              + S   KG+   +  
Sbjct: 486 DITVTSEQGKGSTFTLTI 503


>gi|315641356|ref|ZP_07896432.1| sensor histidine kinase VicK [Enterococcus italicus DSM 15952]
 gi|315482929|gb|EFU73449.1| sensor histidine kinase VicK [Enterococcus italicus DSM 15952]
          Length = 613

 Score =  324 bits (830), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 90/458 (19%), Positives = 192/458 (41%), Gaps = 33/458 (7%)

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA-SARLHTIQW-NRENSLAMTFI 416
           +      ++ +  +  L        + L+ +          R   ++    + S  +   
Sbjct: 172 EYAQINDIAVIFISASLIAAFISMVIALFVARSITQPIGEMRQQALRIARGDYSGKVAIH 231

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476
             ++  Q  +   Q   + E+         +E E  +L S+L   +DG+   +R G +++
Sbjct: 232 AQDELGQLADTFNQLAEQIEETQE-----AIESERNRLNSVLSHMTDGVIATDRRGKVIT 286

Query: 477 TNRAVSKLFGY-PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
            N     L      E+ + +     LE          L  +L       L + +      
Sbjct: 287 INEMALSLLDKKNEEEAIGQSILDLLEIGEEYT----LRTLLESSNEMLLHRSSSEVESG 342

Query: 536 EKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
           + +L +   + +      S     +HD++E ++ + +              + DF++ VS
Sbjct: 343 QLILRVDFSMIRRDSGFISGIVAVIHDVTEQEKTEKE--------------RRDFVSNVS 388

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HE+RTPLT++  + E + +  +         ++        + ++ ++NDLL++S+++ G
Sbjct: 389 HELRTPLTSMHSYLEALSDGAWR--DEEIAPDFLKVTLDETDRMIRMINDLLNLSRMDGG 446

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYA--NEKRILIRTSFANNIPRILADLRSVKQIALNI 711
              L  E V+ +E V   ++   +     EKR +IR  F      +  D   + Q+  NI
Sbjct: 447 NAQLQKEYVNFNELVHFVLNRFDMMVTGKEKRYVIRRDFTQRDLWVEVDADRMIQVIDNI 506

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           ++NAI ++P GG I +S +  ++  ++L +RD G+G+   +L K    F ++  ++  + 
Sbjct: 507 MNNAIKYSPDGGVITVSLS-ETHNHILLSIRDQGMGIPKVDLAKIFTRFYRVDKARARKQ 565

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            GTGLGL +++ ++ A+ G  +  S    G+   I  P
Sbjct: 566 GGTGLGLAISREVIKAHKGSIWAESKENYGSTFYISLP 603


>gi|300955799|ref|ZP_07168141.1| PAS domain S-box [Escherichia coli MS 175-1]
 gi|300317345|gb|EFJ67129.1| PAS domain S-box [Escherichia coli MS 175-1]
          Length = 778

 Score =  324 bits (830), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 85/436 (19%), Positives = 178/436 (40%), Gaps = 17/436 (3%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L +           L  +Q     +     I   +  +         ++ E
Sbjct: 81  EESRQRLSRLVQKLEEMRERDLSL-NVQLKDNIAQLNQEIAVREKAEAELQETFGQLKIE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             +    + ++E +   L S L+A+ D +   N +      NRA+  L G   + ++   
Sbjct: 140 IKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCY 554
                     + +     ++   ++  T E+        +    +R +    ++      
Sbjct: 200 PADVYSPEAAAKVIETDEKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGL 259

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+        +   E+ S  K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 260 MGFGRDITERKR-------YQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE 312

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     +Y   I  S   + +I ND++D+ K+E  K+ L  +PV     +++  +L
Sbjct: 313 LTA----EQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENL 368

Query: 675 VQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
             L A +K +         +P +++ D   ++QI  N++SNA+ FT  G Q+ +   +  
Sbjct: 369 SALQAQQKGLRFTLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQG-QVTVRVRYDE 427

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMGKF 792
            + +   V D+G+G+   EL+K    + Q+ +S   +   GTG+GL +++ +     G  
Sbjct: 428 GDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDI 487

Query: 793 YIFSTPAKGTLIEIIF 808
            + S   KG+   +  
Sbjct: 488 TVTSEQGKGSTFTLTI 503


>gi|222055301|ref|YP_002537663.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           FRC-32]
 gi|221564590|gb|ACM20562.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           FRC-32]
          Length = 794

 Score =  324 bits (830), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 108/761 (14%), Positives = 241/761 (31%), Gaps = 68/761 (8%)

Query: 67  YLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH 126
            L  E  F          F W     G +  +++   +  G   +               
Sbjct: 78  SLAGEERFRLIADSMPS-FVWTAKPDGTVDYVNKIFKEFTGLETYDD-----SSCIHPED 131

Query: 127 IDPNNHI-GDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVH 185
                 I  + ++  N +  +      +G  +Y      A+P++    +    R +G   
Sbjct: 132 RAATETIWREAMQTGNQYQIEHRFRRHDG--IYRWYLCRAVPVHDPAGKII--RWYGTST 187

Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE 245
                   +    R+    S           V     D   +      L+ +  +     
Sbjct: 188 DIDDLKSAKERISRILDSTSDGFIAIDRDWRVT----DFNRKAEELSGLKAEQLIGQTYW 243

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
               +    + E       EE+     E+++            +     +    F +   
Sbjct: 244 EIVPQAPGSRIENAYRSAMEENRSVHFEEYYLCYGKLL---DVYVHPYVDGIAVFFHD-L 299

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAG 364
            +   ++             +   PI F  + +       N +   +        +    
Sbjct: 300 SDRERVAEALRSRTEELESLLRHAPIGFAFFDNQHRYLRVNKALCQINGLSEEQTLGKTI 359

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
           G   L    ++ D   ++           +       T +        +T   F      
Sbjct: 360 G-EVLPVNARIVDPILVQVFD----SGEAVETEISGETPKEPGITRHWLTGF-FPVFAST 413

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
            + +       E  + +  +  M     +L +I++   D +   +  GI+ + N+   KL
Sbjct: 414 KKPVAVGTYVVEITERKRAEEAM----SRLAAIVQGAEDAVFSEDLNGIVQTWNKGAEKL 469

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
           +GY  ++I+ K  ++ +       +     ++            T+  TK+ + + + + 
Sbjct: 470 YGYSADEIIGKHISIVVPPELAGELEEMTRKMKQGIQD---HFETVRITKQGERIFVFLT 526

Query: 545 IKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
           +  +  ++   +     + DISE K+ +  L    K  E+ +     F    SH+++ PL
Sbjct: 527 MSPIRNATGRIVGVSKIVRDISERKRAEEDLKETVKALERTNRELQQFAYVASHDLQEPL 586

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
             +  + ++   +  G + + +  +Y  +     N +  +VNDLL  S  E G     F+
Sbjct: 587 RNVTRYMDLFARKYEGHI-DEKADKYIRFAMEGANRIHALVNDLLAYS--ELGVAAGEFK 643

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS------- 713
           PVS+     EA+  ++    E   +I       +P +  +                    
Sbjct: 644 PVSMLAIAEEAMDNLRQLIEESHAVIVLD---AMPEVHGNK-----------GQLVQLLQ 689

Query: 714 ----NAIHFTPSGGQIIISTTHTS-NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
               NA+ F  S    +I  +     +     VRD GVG+     +K    F ++    +
Sbjct: 690 NLLCNAVKFGKSHVAPLIRISAERLADAWCFSVRDNGVGIDPLYFDKIFVIFQRLHA--R 747

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
               GTG+GL + + +V+ + G+ ++ S   +G+      P
Sbjct: 748 SEHPGTGIGLAICRKIVELHGGRIWVESRLDEGSTFYFTIP 788



 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 13/138 (9%), Positives = 35/138 (25%), Gaps = 11/138 (7%)

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
              ++  K        +   I ++    +     +G +   N+   +  G    D     
Sbjct: 68  IRYSKRLKEASLAGEERFRLIADSMPSFVWTAKPDGTVDYVNKIFKEFTGLETYDD---- 123

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--- 553
            +  +     +       E +    +  +E        +            +   +    
Sbjct: 124 -SSCIHPEDRAATETIWREAMQTGNQYQIEH--RFRRHDGIYRWYLCRAVPVHDPAGKII 180

Query: 554 -YSLTMHDISEWKQEKNK 570
            +  T  DI + K  K +
Sbjct: 181 RWYGTSTDIDDLKSAKER 198


>gi|167746744|ref|ZP_02418871.1| hypothetical protein ANACAC_01456 [Anaerostipes caccae DSM 14662]
 gi|167653704|gb|EDR97833.1| hypothetical protein ANACAC_01456 [Anaerostipes caccae DSM 14662]
          Length = 811

 Score =  324 bits (830), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 106/516 (20%), Positives = 188/516 (36%), Gaps = 46/516 (8%)

Query: 322 TPETVDKCPIPF---FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
               +    +      +     L +AN  +  L  +   +          L      S  
Sbjct: 22  YDTLMRLLGVSVSKHLLDDRFTLIWANDFYYELIGWPKDEYEAAFHNRPDLYYQYHDSQK 81

Query: 379 NAIKPV-MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
              +    +  +  +       +  I+    N + + F           +     +    
Sbjct: 82  EWEELSETVLNAVSSGQNGYHMVSRIRRKDGNYVWVQFSAQFSDEYINGHQVAYSVLTNI 141

Query: 438 VDTRINKRKMEIEVMQLCSIL-EATSDGI--AIINREGIILST--NRAVSKLFGYPVEDI 492
            D    +++         S+  E     +    I++E    +   N    + FG      
Sbjct: 142 DDLIRAQKE--------QSVTYENIPGFVAKYRIDQEFNFQALEGNDRFMEYFGNDAVG- 192

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
                +     +    +      IL     + L  +    + +E+ L L++    + +  
Sbjct: 193 SGSSLSQRNIHSNMDTLLEQKDRILEG---KPLHFLMNVKSLKEQTLWLQVNASCIEWQD 249

Query: 553 C---YSLTMHDIS--------EWKQEKNK--LSHAKKIAEKESSHKSDFLARVSHEIRTP 599
               Y     DI+        + K  +    L  A  +AE+ +  K++FL+R+SHEIRTP
Sbjct: 250 GCPVYLAVFTDITDVTELREIQRKLTEQAAALKDALTVAEQANKAKTEFLSRMSHEIRTP 309

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYI--EYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           + AIIG +            + R    +    I  S   ++ ++ND+LD+SKI  GKM +
Sbjct: 310 MNAIIGMT-----TIAAAYIDDRQRVSDCLEKIGYSSKHLMTLINDILDMSKISEGKMKI 364

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAI 716
             EP  L+  V    S+V   A++K ++     A+     ++ D   + QI LN+LSNA+
Sbjct: 365 AHEPFQLETVVESVSSIVYPQASDKGLVFTVPLADLTDTSLVGDSLRLNQILLNLLSNAL 424

Query: 717 HFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
            FTP GG I +             +   V DTG+GM +  +     PF Q   S   +  
Sbjct: 425 KFTPEGGSIRMEIRQIKKNSDTVCLRFTVSDTGIGMADEFISNLFHPFEQEDASTSQKYG 484

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           GTGLG+ + K +V    G   + S P KGT   +  
Sbjct: 485 GTGLGMSITKNLVTLMGGTISVKSKPGKGTTFTVEL 520


>gi|294495286|ref|YP_003541779.1| multi-sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
 gi|292666285|gb|ADE36134.1| multi-sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
          Length = 510

 Score =  324 bits (830), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 95/378 (25%), Positives = 187/378 (49%), Gaps = 10/378 (2%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           K+  E  Q  + ++     I +++R+  ++  N+  S++ GYP E+I+ + +        
Sbjct: 127 KLAKERDQAQTYIDVAQTLIGVVDRDLKVVLANKKSSEVLGYPQEEIIGQKWFDVFLPER 186

Query: 506 PSVMNHYLTEILSLDL---RQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHD 560
              M      ++        +  EK  L  T EE+L+    ++ K           +  D
Sbjct: 187 IRDMIKTGYNMVLEGEIEPPEFSEKPILTRTGEERLVFWHDVVLKDDQGGIMGTISSGED 246

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I+E KQ +  L  A K  ++    +++FLA +S E++ PL +I GFS ++    +G + N
Sbjct: 247 ITEKKQAEMALVEANKELQELDKMRNEFLANISKELQMPLASIKGFSNLLARGEYGEI-N 305

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
            +  +    I R+ + +   VN LL  S+  S  +  +FE   ++  +++ +  +++   
Sbjct: 306 SKQRDALLTITRNCDRLQKHVNVLLYASEDCSQNVIYYFEATDINSLLNKTLDELKINFA 365

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
           +  + +  +   +IP++ AD   +K +   IL NAI FTP+ G+I +ST+ T  + V ++
Sbjct: 366 KYNLTLEINL-EDIPQVNADETQLKNVIFQILDNAIKFTPANGKIKVSTSRT-GKYVEMK 423

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           +RD+G+G+   ++E   K F Q+  S + +  GTG+GL + K +V+ + GK  + S   K
Sbjct: 424 IRDSGIGIAKDKVENIFKSFYQVDGSTRRKYGGTGIGLYICKKIVEGHKGKILVESVKGK 483

Query: 801 GTLIEIIFPLYDTSHPHD 818
           G+   +  P+   + P D
Sbjct: 484 GSEFTVQLPIR--TQPDD 499



 Score = 48.5 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/249 (7%), Positives = 59/249 (23%), Gaps = 7/249 (2%)

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
                   E ++  I   ++  P + + +   +    Y    ++ +      L     + 
Sbjct: 25  ASYRVLQAEPKEDTISFIENNAPSIVIIDNTETEEVNYRICREIKQNTGDRYLPIIMFTK 84

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
            ++E              +     ++ +      S     +L     +  +     +D  
Sbjct: 85  TDRECIRAALKED--ADDFITDKSDDLEILTRINSLLQIKTLYDKLAKERDQAQTYIDVA 142

Query: 330 PIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388
                 V     +  AN     +  Y   + I        +    ++ D       M+  
Sbjct: 143 QTLIGVVDRDLKVVLANKKSSEVLGYPQEEIIGQKWF--DVFLPERIRDMIKTGYNMVL- 199

Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
            +            I         + +      +     M       +  + +  +  + 
Sbjct: 200 -EGEIEPPEFSEKPILTRTGEERLVFWHDVVLKDDQGGIMGTISSGEDITEKKQAEMALV 258

Query: 449 IEVMQLCSI 457
               +L  +
Sbjct: 259 EANKELQEL 267



 Score = 48.5 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/133 (12%), Positives = 39/133 (29%), Gaps = 10/133 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD--LLKRQN---TW 143
           +D    +   +++  + +G    ++IG +  DV     I      G   +L+ +     +
Sbjct: 149 VDRDLKVVLANKKSSEVLGYPQEEIIGQKWFDVFLPERIRDMIKTGYNMVLEGEIEPPEF 208

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             K  L       L    D+    +        G    G                  +K+
Sbjct: 209 SEKPILTRTGEERLVFWHDVV---LKDDQGGIMGTISSG--EDITEKKQAEMALVEANKE 263

Query: 204 FSHLHEIKKGHSS 216
              L +++    +
Sbjct: 264 LQELDKMRNEFLA 276


>gi|88860384|ref|ZP_01135022.1| two-component hybrid sensor and regulator [Pseudoalteromonas
           tunicata D2]
 gi|88817582|gb|EAR27399.1| two-component hybrid sensor and regulator [Pseudoalteromonas
           tunicata D2]
          Length = 881

 Score =  324 bits (830), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 129/812 (15%), Positives = 283/812 (34%), Gaps = 64/812 (7%)

Query: 34  FETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLD--SENTFVFDPIPRTVRFTWNIDA 91
           F+   +    P     EQ+    ++++S  +       +E  F F    +       +DA
Sbjct: 99  FKNINTLIAIPSPKQLEQAISKAEHEKSRRSQLEQAQKAEAIFKFSLELQPAGLL-VVDA 157

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI--------------GDLL 137
           +  ++  ++   +       ++IG  L      L +D                   G  +
Sbjct: 158 NHIIRVANKAFEQLFKYDTDELIGKPL----HCLLLDEQAKFHHVLTDSYFKKPIQGHAM 213

Query: 138 KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG 197
            +  T  GKT      G  ++V I+L+     +    F+      +   N   N      
Sbjct: 214 AQGRTVRGKT----KNGDEIWVEINLSVHNFENEKHAFASVN--SVSTPNNEHNFVFEKS 267

Query: 198 KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS----SLTEYYAHKDDV 253
            RL +      +   G      +  D++        L     V     SL + + H DD 
Sbjct: 268 NRLQRVIDATED---GIWEWNVQTNDVWYSNRSMRMLGYDPDVIKPDFSLWQAHVHPDDK 324

Query: 254 LKTEKY-PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES----FEYLSHRNH 308
            +  +        +          + N      +    T+ +   +         +    
Sbjct: 325 ARVFEALDRHLKYQEKYDVTYRGLSENQQYQWIRTRGKTIYDTDNKPLLMSGTLTNINQL 384

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVY--SHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
             L   F +  +     ++K     F+Y   +  + + N  +  +T Y S + +      
Sbjct: 385 KELELQFSQKSHFLKAVLNKSLCAIFIYNIHNQKITFINEQYSEITGY-SFEQLNQIQYQ 443

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE-KANQFP 425
             L       D   +       +      A      I+  +   +           ++  
Sbjct: 444 HHLFTLFHPDDQTKLSSHYNTLTVNKNKEAQGLEFRIKHAQGQWIWCLSKDSPYSFDEQG 503

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
           +     G   +  + +  + K++       +  E  + GIA +  +G  L  NR + ++ 
Sbjct: 504 QVSEIIGTFFDVSEQKQQRDKIKALAQDFYTTFEQAAVGIAHVGLDGTWLKANRKLCEIL 563

Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
           GY  +++L   F         ++    + ++L+ +  Q          K  K++   + +
Sbjct: 564 GYSHDELLSFNFQNITYPEDLNIDLELVAQLLADEFAQ-YSMEKRYICKNGKIIWAFLTV 622

Query: 546 KKLPFS----SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
             +       S +   + DISE K  +  L+       + +     F    SH+++ PL 
Sbjct: 623 SVVRDEYHNPSHFISVVEDISERKAVEQALA-------ESNLALEKFAYSASHDLQEPLR 675

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
            I  FS+ +  +  G L +       + +  + + +  +++ LL +S+    K  L+ EP
Sbjct: 676 KISAFSDSLSERLKGKLDDEDAEYELSRLTDAASRMRGMIHSLLQLSRY--SKHQLNKEP 733

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           +   + ++     +     E    +          I ADL S  Q+  N+++N+I +  +
Sbjct: 734 IRFSDLLAIIREDLSELIMESDCNLILEQD---FTIYADLNSFLQVLRNLITNSIRYKQA 790

Query: 722 GGQIIISTTHT-SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
             Q I+  +H  S +E+ +RV D G G       +  +PF ++ ++   + +G G+GL +
Sbjct: 791 ELQPIVKFSHELSEQELTIRVSDNGTGFDEKYASEIFQPFKRLASA---KVKGYGMGLAI 847

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
            K ++ A+ G+  + S   +GT   +I P+ +
Sbjct: 848 CKQIIKAHGGEIKVESHCNQGTTFTVILPIEE 879


>gi|24114498|ref|NP_709008.1| aerobic respiration control sensor protein ArcB [Shigella flexneri
           2a str. 301]
 gi|30064547|ref|NP_838718.1| aerobic respiration control sensor protein ArcB [Shigella flexneri
           2a str. 2457T]
 gi|49176326|ref|YP_026207.1| aerobic respiration control sensor histidine protein kinase,
           cognate to two-component response regulators ArcA and
           RssB [Escherichia coli str. K-12 substr. MG1655]
 gi|82545553|ref|YP_409500.1| aerobic respiration control sensor protein ArcB [Shigella boydii
           Sb227]
 gi|89109973|ref|AP_003753.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli str. K-12 substr. W3110]
 gi|110807075|ref|YP_690595.1| aerobic respiration control sensor protein ArcB [Shigella flexneri
           5 str. 8401]
 gi|157159325|ref|YP_001464688.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           E24377A]
 gi|170018540|ref|YP_001723494.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           ATCC 8739]
 gi|170082744|ref|YP_001732064.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli str. K-12 substr. DH10B]
 gi|170683438|ref|YP_001745482.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           SMS-3-5]
 gi|188492706|ref|ZP_02999976.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           53638]
 gi|191168636|ref|ZP_03030418.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           B7A]
 gi|193065369|ref|ZP_03046440.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           E22]
 gi|193070312|ref|ZP_03051255.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           E110019]
 gi|194429137|ref|ZP_03061667.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           B171]
 gi|194439214|ref|ZP_03071295.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           101-1]
 gi|209920685|ref|YP_002294769.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           SE11]
 gi|218555780|ref|YP_002388693.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           IAI1]
 gi|218696915|ref|YP_002404582.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           55989]
 gi|218701979|ref|YP_002409608.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           IAI39]
 gi|218706830|ref|YP_002414349.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           UMN026]
 gi|238902312|ref|YP_002928108.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli BW2952]
 gi|253771956|ref|YP_003034787.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254038375|ref|ZP_04872433.1| multi-sensor hybrid histidine kinase [Escherichia sp. 1_1_43]
 gi|256018871|ref|ZP_05432736.1| aerobic respiration control sensor protein ArcB [Shigella sp. D9]
 gi|260857337|ref|YP_003231228.1| hybrid sensory histidine kinase ArcB in two-component regulatory
           system with ArcA [Escherichia coli O26:H11 str. 11368]
 gi|260869961|ref|YP_003236363.1| hybrid sensory histidine kinase ArcB in two-component regulatory
           system with ArcA [Escherichia coli O111:H- str. 11128]
 gi|291284584|ref|YP_003501402.1| Aerobic respiration control sensor protein arcB [Escherichia coli
           O55:H7 str. CB9615]
 gi|293406819|ref|ZP_06650745.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           FVEC1412]
 gi|293412581|ref|ZP_06655304.1| conserved hypothetical protein [Escherichia coli B354]
 gi|293416639|ref|ZP_06659278.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           B185]
 gi|293449543|ref|ZP_06663964.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           B088]
 gi|298382560|ref|ZP_06992157.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           FVEC1302]
 gi|300817535|ref|ZP_07097751.1| PAS domain S-box protein [Escherichia coli MS 107-1]
 gi|300897978|ref|ZP_07116354.1| PAS domain S-box [Escherichia coli MS 198-1]
 gi|300904402|ref|ZP_07122250.1| PAS domain S-box [Escherichia coli MS 84-1]
 gi|300926045|ref|ZP_07141867.1| PAS domain S-box [Escherichia coli MS 182-1]
 gi|300929906|ref|ZP_07145348.1| PAS domain S-box [Escherichia coli MS 187-1]
 gi|300938126|ref|ZP_07152900.1| PAS domain S-box [Escherichia coli MS 21-1]
 gi|300948865|ref|ZP_07162930.1| PAS domain S-box [Escherichia coli MS 116-1]
 gi|301025888|ref|ZP_07189375.1| PAS domain S-box [Escherichia coli MS 196-1]
 gi|301326357|ref|ZP_07219721.1| PAS domain S-box [Escherichia coli MS 78-1]
 gi|301644924|ref|ZP_07244893.1| PAS domain S-box [Escherichia coli MS 146-1]
 gi|307139896|ref|ZP_07499252.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           H736]
 gi|307313085|ref|ZP_07592711.1| multi-sensor hybrid histidine kinase [Escherichia coli W]
 gi|309793789|ref|ZP_07688215.1| PAS domain S-box [Escherichia coli MS 145-7]
 gi|331643908|ref|ZP_08345039.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           H736]
 gi|331654814|ref|ZP_08355814.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           M718]
 gi|331670037|ref|ZP_08370882.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           TA271]
 gi|331679289|ref|ZP_08379961.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           H591]
 gi|331684857|ref|ZP_08385449.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           H299]
 gi|332279959|ref|ZP_08392372.1| histidine protein kinase/phosphatase [Shigella sp. D9]
 gi|83287862|sp|P0AEC3|ARCB_ECOLI RecName: Full=Aerobic respiration control sensor protein ArcB
 gi|83287863|sp|P0AEC4|ARCB_SHIFL RecName: Full=Aerobic respiration control sensor protein ArcB
 gi|40951|emb|CAA37397.1| arcB [Escherichia coli]
 gi|24053684|gb|AAN44715.1| histidine protein kinase/phosphatase, aerobic respiration
           sensor-response protein, sensor for arcA [Shigella
           flexneri 2a str. 301]
 gi|30042806|gb|AAP18529.1| histidine protein kinase/phosphatase, aerobic respiration
           sensor-response protein, sensor for arcA [Shigella
           flexneri 2a str. 2457T]
 gi|48994928|gb|AAT48172.1| aerobic respiration control sensor histidine protein kinase,
           cognate to two-component response regulators ArcA and
           RssB [Escherichia coli str. K-12 substr. MG1655]
 gi|81246964|gb|ABB67672.1| aerobic respiration sensor-response protein [Shigella boydii Sb227]
 gi|85676004|dbj|BAE77254.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli str. K12 substr. W3110]
 gi|110616623|gb|ABF05290.1| aerobic respiration sensor-response protein [Shigella flexneri 5
           str. 8401]
 gi|157081355|gb|ABV21063.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           E24377A]
 gi|169753468|gb|ACA76167.1| multi-sensor hybrid histidine kinase [Escherichia coli ATCC 8739]
 gi|169890579|gb|ACB04286.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli str. K-12 substr. DH10B]
 gi|170521156|gb|ACB19334.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           SMS-3-5]
 gi|188487905|gb|EDU63008.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           53638]
 gi|190901330|gb|EDV61097.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           B7A]
 gi|192927010|gb|EDV81633.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           E22]
 gi|192956371|gb|EDV86831.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           E110019]
 gi|194412862|gb|EDX29154.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           B171]
 gi|194421910|gb|EDX37916.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           101-1]
 gi|209757938|gb|ACI77281.1| aerobic respiration sensor-response protein [Escherichia coli]
 gi|209757944|gb|ACI77284.1| aerobic respiration sensor-response protein [Escherichia coli]
 gi|209913944|dbj|BAG79018.1| aerobic respiration sensor-response protein [Escherichia coli SE11]
 gi|218353647|emb|CAU99866.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli 55989]
 gi|218362548|emb|CAR00172.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli IAI1]
 gi|218371965|emb|CAR19821.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli IAI39]
 gi|218433927|emb|CAR14844.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli UMN026]
 gi|222034927|emb|CAP77670.1| aerobic respiration control sensor protein arcB [Escherichia coli
           LF82]
 gi|226839999|gb|EEH72020.1| multi-sensor hybrid histidine kinase [Escherichia sp. 1_1_43]
 gi|238861439|gb|ACR63437.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli BW2952]
 gi|242378753|emb|CAQ33543.1| ArcB sensory histidine kinase [Escherichia coli BL21(DE3)]
 gi|253323000|gb|ACT27602.1| multi-sensor hybrid histidine kinase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253979209|gb|ACT44879.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli BL21(DE3)]
 gi|257755986|dbj|BAI27488.1| hybrid sensory histidine kinase ArcB in two-component regulatory
           system with ArcA [Escherichia coli O26:H11 str. 11368]
 gi|257766317|dbj|BAI37812.1| hybrid sensory histidine kinase ArcB in two-component regulatory
           system with ArcA [Escherichia coli O111:H- str. 11128]
 gi|260447763|gb|ACX38185.1| multi-sensor hybrid histidine kinase [Escherichia coli DH1]
 gi|281602592|gb|ADA75576.1| Aerobic respiration control sensor protein arcB [Shigella flexneri
           2002017]
 gi|290764457|gb|ADD58418.1| Aerobic respiration control sensor protein arcB [Escherichia coli
           O55:H7 str. CB9615]
 gi|291322633|gb|EFE62062.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           B088]
 gi|291426825|gb|EFE99857.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           FVEC1412]
 gi|291431995|gb|EFF04978.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           B185]
 gi|291469352|gb|EFF11843.1| conserved hypothetical protein [Escherichia coli B354]
 gi|298277700|gb|EFI19216.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           FVEC1302]
 gi|299879910|gb|EFI88121.1| PAS domain S-box [Escherichia coli MS 196-1]
 gi|300358326|gb|EFJ74196.1| PAS domain S-box [Escherichia coli MS 198-1]
 gi|300403676|gb|EFJ87214.1| PAS domain S-box [Escherichia coli MS 84-1]
 gi|300417903|gb|EFK01214.1| PAS domain S-box [Escherichia coli MS 182-1]
 gi|300451670|gb|EFK15290.1| PAS domain S-box [Escherichia coli MS 116-1]
 gi|300456889|gb|EFK20382.1| PAS domain S-box [Escherichia coli MS 21-1]
 gi|300462192|gb|EFK25685.1| PAS domain S-box [Escherichia coli MS 187-1]
 gi|300529833|gb|EFK50895.1| PAS domain S-box protein [Escherichia coli MS 107-1]
 gi|300846921|gb|EFK74681.1| PAS domain S-box [Escherichia coli MS 78-1]
 gi|301076775|gb|EFK91581.1| PAS domain S-box [Escherichia coli MS 146-1]
 gi|306906996|gb|EFN37504.1| multi-sensor hybrid histidine kinase [Escherichia coli W]
 gi|308122746|gb|EFO60008.1| PAS domain S-box [Escherichia coli MS 145-7]
 gi|309703636|emb|CBJ02976.1| aerobic respiration control protein (bifunctional two-component
           sensor kinase/response regulator) [Escherichia coli ETEC
           H10407]
 gi|312947767|gb|ADR28594.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O83:H1 str. NRG 857C]
 gi|313648546|gb|EFS12988.1| aerobic respiration control sensor protein arcB [Shigella flexneri
           2a str. 2457T]
 gi|315062516|gb|ADT76843.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli W]
 gi|315137796|dbj|BAJ44955.1| aerobic respiration control sensor protein arcB [Escherichia coli
           DH1]
 gi|315257138|gb|EFU37106.1| PAS domain S-box [Escherichia coli MS 85-1]
 gi|315617017|gb|EFU97627.1| aerobic respiration control sensor protein arcB [Escherichia coli
           3431]
 gi|320186696|gb|EFW61420.1| Aerobic respiration control sensor protein arcB [Shigella flexneri
           CDC 796-83]
 gi|320202124|gb|EFW76699.1| Aerobic respiration control sensor protein arcB [Escherichia coli
           EC4100B]
 gi|320640281|gb|EFX09853.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. G5101]
 gi|320645578|gb|EFX14587.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H- str. 493-89]
 gi|320650888|gb|EFX19345.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H- str. H 2687]
 gi|320656269|gb|EFX24181.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O55:H7 str. 3256-97 TW 07815]
 gi|320666794|gb|EFX33773.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. LSU-61]
 gi|323154425|gb|EFZ40626.1| aerobic respiration control sensor protein arcB [Escherichia coli
           EPECa14]
 gi|323162902|gb|EFZ48737.1| aerobic respiration control sensor protein arcB [Escherichia coli
           E128010]
 gi|323173530|gb|EFZ59159.1| aerobic respiration control sensor protein arcB [Escherichia coli
           LT-68]
 gi|323178614|gb|EFZ64190.1| aerobic respiration control sensor protein arcB [Escherichia coli
           1180]
 gi|323183164|gb|EFZ68562.1| aerobic respiration control sensor protein arcB [Escherichia coli
           1357]
 gi|323376896|gb|ADX49164.1| multi-sensor hybrid histidine kinase [Escherichia coli KO11]
 gi|323941690|gb|EGB37869.1| hsp90-like protein [Escherichia coli E482]
 gi|323946936|gb|EGB42952.1| hsp90-like protein [Escherichia coli H120]
 gi|323961135|gb|EGB56749.1| hsp90-like protein [Escherichia coli H489]
 gi|323966390|gb|EGB61824.1| hsp90-like protein [Escherichia coli M863]
 gi|323970227|gb|EGB65498.1| hsp90-like protein [Escherichia coli TA007]
 gi|324119575|gb|EGC13457.1| hsp90-like protein [Escherichia coli E1167]
 gi|331037379|gb|EGI09603.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           H736]
 gi|331048196|gb|EGI20273.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           M718]
 gi|331062950|gb|EGI34864.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           TA271]
 gi|331073354|gb|EGI44677.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           H591]
 gi|331078472|gb|EGI49678.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           H299]
 gi|332090932|gb|EGI96023.1| aerobic respiration control sensor protein arcB [Shigella boydii
           3594-74]
 gi|332102311|gb|EGJ05657.1| histidine protein kinase/phosphatase [Shigella sp. D9]
 gi|332345167|gb|AEE58501.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           UMNK88]
 gi|332752897|gb|EGJ83282.1| aerobic respiration control sensor protein arcB [Shigella flexneri
           K-671]
 gi|332765209|gb|EGJ95436.1| aerobic respiration control sensor protein arcB [Shigella flexneri
           2930-71]
 gi|332999289|gb|EGK18875.1| aerobic respiration control sensor protein arcB [Shigella flexneri
           K-272]
 gi|333014521|gb|EGK33868.1| aerobic respiration control sensor protein arcB [Shigella flexneri
           K-304]
 gi|333014660|gb|EGK34006.1| aerobic respiration control sensor protein arcB [Shigella flexneri
           K-227]
          Length = 778

 Score =  324 bits (830), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 86/438 (19%), Positives = 180/438 (41%), Gaps = 21/438 (4%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L +           L  +Q     +     I   +  +         ++ E
Sbjct: 81  EESRQRLSRLVQKLEEMRERDLSL-NVQLKDNIAQLNQEIAVREKAEAELQETFGQLKIE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             +    + ++E +   L S L+A+ D +   N +      NRA+  L G   + ++   
Sbjct: 140 IKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCY 554
                     + +     ++   ++  T E+        +    +R +    ++      
Sbjct: 200 PADVYSPEAAAKVIETDEKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGL 259

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+        +   E+ S  K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 260 MGFGRDITERKR-------YQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE 312

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     +Y   I  S   + +I ND++D+ K+E  K+ L  +PV     +++  +L
Sbjct: 313 LTA----EQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENL 368

Query: 675 VQLYANEKRILIRTSFANNIP---RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
             L A +K   +R +    +P   +++ D   ++QI  N++SNA+ FT  G Q+ +   +
Sbjct: 369 SALQAQQKG--LRFNLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQG-QVTVRVRY 425

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMG 790
              + +   V D+G+G+   EL+K    + Q+ +S   +   GTG+GL +++ +     G
Sbjct: 426 DEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGG 485

Query: 791 KFYIFSTPAKGTLIEIIF 808
              + S   KG+   +  
Sbjct: 486 DITVTSEQGKGSTFTLTI 503


>gi|320194695|gb|EFW69325.1| Aerobic respiration control sensor protein arcB [Escherichia coli
           WV_060327]
          Length = 778

 Score =  324 bits (830), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 86/438 (19%), Positives = 180/438 (41%), Gaps = 21/438 (4%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L +           L  +Q     +     I   +  +         ++ E
Sbjct: 81  EESRQRLSRLVQKLEEMRERDLSL-NVQLKDNIAQLNQEIAVREKAEAELQETFGQLKIE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             +    + ++E +   L S L+A+ D +   N +      NRA+  L G   + ++   
Sbjct: 140 IKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCY 554
                     + +     ++   ++  T E+        +    +R +    ++      
Sbjct: 200 PADVYSPEAAAKVIETDEKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGL 259

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+        +   E+ S  K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 260 MGFGRDITERKR-------YQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE 312

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     +Y   I  S   + +I ND++D+ K+E  K+ L  +PV     +++  +L
Sbjct: 313 LTA----EQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENL 368

Query: 675 VQLYANEKRILIRTSFANNIP---RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
             L A +K   +R +    +P   +++ D   ++QI  N++SNA+ FT  G Q+ +   +
Sbjct: 369 SALQAQQKG--LRFNLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQG-QVTVRVRY 425

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMG 790
              + +   V D+G+G+   EL+K    + Q+ +S   +   GTG+GL +++ +     G
Sbjct: 426 DEGDMLHFEVEDSGIGIPEDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGG 485

Query: 791 KFYIFSTPAKGTLIEIIF 808
              + S   KG+   +  
Sbjct: 486 DITVTSEQGKGSTFTLTI 503


>gi|126658667|ref|ZP_01729813.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. CCY0110]
 gi|126620104|gb|EAZ90827.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. CCY0110]
          Length = 826

 Score =  324 bits (830), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 100/378 (26%), Positives = 194/378 (51%), Gaps = 24/378 (6%)

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
           E    +  + ++  +  Q   ++    +GI I+N+EG I   N A  K+F  P+  +L  
Sbjct: 217 EIKRNKKIQSQLIKQETQFKELVYNIENGIIIVNQEGKIKFANPAALKIFEQPLHSLLDY 276

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555
            F + +  +                  + +E   L S  +  ++ + I + +    S Y 
Sbjct: 277 EFGLPIIND------------------KPVELEILKSNNQTGIVEMNITLTEWENESVYL 318

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
           ++  +I+  K+ + ++  AK  A+  +  K++FL  VSHE+RTP+ AI+GFS+++K +  
Sbjct: 319 VSFREITMRKKAEEEIIKAKLEADSANQAKTEFLTNVSHELRTPMNAILGFSQLLKLKL- 377

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
             + +P   EY + I  + N++L ++N+LLDI++ E+GK+ L++   S+ + + E I L 
Sbjct: 378 -KVDDPLIYEYIDTIYNNSNILLSLINELLDINQAEAGKIELNYCGFSVRQFLGETIKLF 436

Query: 676 QLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTT--H 731
               ++K + +     +N+P+ I  D   ++QI +N++SN++ FT  G  +I+IS    +
Sbjct: 437 SSQLSKKTVNLLIDIEDNVPKFINFDSLRLRQILINLISNSLKFTTKGHIKILISIQELY 496

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
            ++  + + V DTG+G+ + + E+  + F Q       R  G GLGL + + + +   G 
Sbjct: 497 LNSCTLKIFVEDTGIGIKDEDKERIFQVFTQSKGQDNYRYGGNGLGLFITQKITECLGGT 556

Query: 792 FYIFSTPAKGTLIEIIFP 809
             + S   KG+   IIFP
Sbjct: 557 ITLESEWGKGSTFTIIFP 574


>gi|57867173|ref|YP_188828.1| sensory box histidine kinase PhoR [Staphylococcus epidermidis
           RP62A]
 gi|57637831|gb|AAW54619.1| sensory box histidine kinase PhoR [Staphylococcus epidermidis
           RP62A]
          Length = 565

 Score =  324 bits (830), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 88/397 (22%), Positives = 184/397 (46%), Gaps = 31/397 (7%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRK--MEIEVMQLCSILEATSDGIAIINREGIIL 475
                   +      +   D+  R+ K     +I+  +L + LE     + +I++ G I+
Sbjct: 191 VRVPESNVKETRALFVTTNDLARRLQKLNNSQKIQSNRLKTTLENIPSSVLMIDKHGEIV 250

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
             N A  ++F  P + +  K +  F++ +   ++          +     +     +   
Sbjct: 251 VANHAYYQVFN-PDQMVENKSYIGFIDDSIEKLIIESFR----TEKVIYEQLEVAINNVH 305

Query: 536 EKLLSLRIIIKKLPFS---SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
            K   +  I              + +HDI+  ++ +              + + +F+A V
Sbjct: 306 TKYFDVSCIPILTKSKKNLQGMVVVLHDITNLQKLE--------------NLRREFVANV 351

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIE 651
           SHE++TP+T+I GF+E +     G   + + ++ + N I +  N +  +V DLLD+S IE
Sbjct: 352 SHELKTPITSIKGFAETLIE---GAKNDEQSLDMFLNIILKESNRIESLVTDLLDLSHIE 408

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
             K  L    ++L E     I  +Q  A  KRI I++    ++  I A    + Q+  N+
Sbjct: 409 QQK-ELEINYMNLSELAINIIDNLQTQAYNKRIKIQSEIEKDVI-IEAHENKIAQVITNL 466

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           LSNAI+++    ++I+   + ++ +V L ++D G+G++  + ++  + F ++  ++    
Sbjct: 467 LSNAINYSSEDNKVIVRV-YRNDNKVYLEIQDYGIGISETDQKRIFERFYRVDKARSRDS 525

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            GTGLGL + K +V+A+ G+  + S P KG++ +++F
Sbjct: 526 GGTGLGLSITKHIVEAHNGRIGVKSAPGKGSIFKVLF 562


>gi|296121601|ref|YP_003629379.1| PAS sensor protein [Planctomyces limnophilus DSM 3776]
 gi|296013941|gb|ADG67180.1| PAS sensor protein [Planctomyces limnophilus DSM 3776]
          Length = 803

 Score =  324 bits (830), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 100/422 (23%), Positives = 182/422 (43%), Gaps = 52/422 (12%)

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
             + + +  ++L ++ E+   GI           TN A   + G  +E+ L   +  F+ 
Sbjct: 215 ALQHLRVSEVRLRTLSESVPIGIFEAGAGANCRYTNSAWRAIAGMSLEESLTHEWFEFVH 274

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHD 560
           ++    +         LD  +    I      +     ++I    +       +  T+ D
Sbjct: 275 EDDREAVRIGWQR--GLDELEGFSGIFRNKAPDGSTGWVQIRSNPVFSDEGTTHVGTIED 332

Query: 561 ISEWKQEKN----------------------------KLSHAKKIAEKESSHKSDFLARV 592
           I+E    +                             +L  AK  AE  +  KS+FLA +
Sbjct: 333 ITERIHAEESLKRYAEDLKRLKEIEEQNSAHLARVVEELGKAKTQAEDAARTKSEFLANM 392

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHEIRTP+TAI+G++E++  Q   P   P   +    I R+ + +L+I+ND+LD+SKIE+
Sbjct: 393 SHEIRTPMTAILGYTELLLEQ---PDIAPHAADSLQTIRRNADFLLEIINDILDLSKIEA 449

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNI 711
            K+ +     S     ++A +L+++ A +K + +    A+N+P  +  D   ++QI LN+
Sbjct: 450 DKLTIESVRCSPILIANDACALMRIRARDKGLKLVVQTASNVPEFVETDPTRLRQILLNL 509

Query: 712 LSNAIHFTPSGGQIIISTTH-----------TSNEEVILRVRDTGVGMTNYELEKAMKPF 760
           L NA+ FT  G  + +   +            +   +   V DTG+GMT  ++ +  +PF
Sbjct: 510 LGNAVKFTHVG-NVQLRVEYVNPQGTQTGNPDALGGLRFSVCDTGIGMTKEQIGRLFQPF 568

Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF----PLYDTSHP 816
            Q   S   +  GTGLGL +++ +     G   + S    G++  +      P + T   
Sbjct: 569 TQADTSTTRKYGGTGLGLTISRRLARMMHGDIEVTSQVGVGSVFSLHIDAIKPQFSTPQF 628

Query: 817 HD 818
           HD
Sbjct: 629 HD 630


>gi|82778524|ref|YP_404873.1| aerobic respiration control sensor protein ArcB [Shigella
           dysenteriae Sd197]
 gi|309785538|ref|ZP_07680169.1| aerobic respiration control sensor protein arcB [Shigella
           dysenteriae 1617]
 gi|81242672|gb|ABB63382.1| aerobic respiration sensor-response protein [Shigella dysenteriae
           Sd197]
 gi|308926658|gb|EFP72134.1| aerobic respiration control sensor protein arcB [Shigella
           dysenteriae 1617]
          Length = 778

 Score =  324 bits (830), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 86/438 (19%), Positives = 180/438 (41%), Gaps = 21/438 (4%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L +           L  +Q     +     I   +  +         ++ E
Sbjct: 81  EESRQRLSRLVQKLEEMRERDLSL-NVQLKDNIAQLNQEIAVREKAEAELQETFGQLKIE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             +    + ++E +   L S L+A+ D +   N +      NRA+  L G   + ++   
Sbjct: 140 IKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCY 554
                     + +     ++   ++  T E+        +    +R +    ++      
Sbjct: 200 PADVYSPEAAAKVIETDEKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGL 259

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+        +   E+ S  K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 260 MGFGRDITERKR-------YQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE 312

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     +Y   I  S   + +I ND++D+ K+E  K+ L  +PV     +++  +L
Sbjct: 313 LTA----EQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENL 368

Query: 675 VQLYANEKRILIRTSFANNIP---RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
             L A +K   +R +    +P   +++ D   ++QI  N++SNA+ FT  G Q+ +   +
Sbjct: 369 SALQAQQKG--LRFNLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQG-QVTVRVRY 425

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMG 790
              + +   V D+G+G+   EL+K    + Q+ +S   +   GTG+GL +++ +     G
Sbjct: 426 DEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGG 485

Query: 791 KFYIFSTPAKGTLIEIIF 808
              + S   KG+   +  
Sbjct: 486 DITVTSEQGKGSTFTLTI 503


>gi|314939996|ref|ZP_07847191.1| PAS domain S-box [Enterococcus faecium TX0133a04]
 gi|314950768|ref|ZP_07853844.1| PAS domain S-box [Enterococcus faecium TX0133A]
 gi|313597048|gb|EFR75893.1| PAS domain S-box [Enterococcus faecium TX0133A]
 gi|313640766|gb|EFS05346.1| PAS domain S-box [Enterococcus faecium TX0133a04]
          Length = 599

 Score =  324 bits (830), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 78/364 (21%), Positives = 162/364 (44%), Gaps = 25/364 (6%)

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
            E  +L S+L   +DG+   +R G +++ N     L     E+ + +     L+      
Sbjct: 246 AERNRLDSVLSHMTDGVIATDRRGKVITINDMAVSLLDIKNEEAIGQSILTLLDIEEEYT 305

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQ 566
               L ++L       L++ T     ++ +L +   + +      S     +HD++E ++
Sbjct: 306 ----LRKLLEDPNEMVLDRSTSTLESDQMILRVDFSMIRRESGFISGLVAVLHDVTEQEK 361

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
            + +              + +F++ VSHE+RTPLT++  + E +    +          +
Sbjct: 362 TERE--------------RREFVSNVSHELRTPLTSMRSYIEALSEGAW--KDEEVAPNF 405

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA--NEKRI 684
                   + ++ ++NDLL++S++++G   L  E V+ +E V+  +    +     EK  
Sbjct: 406 LKVTLDETDRMIRMINDLLNLSRMDTGNTQLQLEYVNFNELVNFVLDRFDMMVGNQEKNY 465

Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744
            IR  F      +  D   + Q+  NI++NAI ++P GG I       ++  V+L + D 
Sbjct: 466 KIRREFTQRDLWVEVDTDKIIQVVDNIMNNAIKYSPDGGTITCRL-LETHNNVVLSITDQ 524

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G+   +L +  + F ++  ++     GTGLGL +++ ++ A+ G  +  S   KG+  
Sbjct: 525 GLGIPKKDLNRVFERFYRVDKARARAQGGTGLGLAISREVIKAHRGAIWAESKEGKGSTF 584

Query: 805 EIIF 808
            I  
Sbjct: 585 YISL 588


>gi|228962520|ref|ZP_04123875.1| hypothetical protein bthur0005_58260 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228797170|gb|EEM44427.1| hypothetical protein bthur0005_58260 [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 566

 Score =  324 bits (830), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 104/532 (19%), Positives = 210/532 (39%), Gaps = 47/532 (8%)

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVD-----KCPIPFFVYSHGNLFYANPSFLLL 351
            +  E +      +     +     T E ++                G++  AN ++  +
Sbjct: 59  GQVIEVVGSTVDITERKKVESELRATKELLESFIKHNLDAITISDREGHILQANKAYEKI 118

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ-WNRENS 410
             + S +              P + D    + +   R   T  +   RL T++  +  + 
Sbjct: 119 FGWSSQEIRGKRL--------PCVPDFLMEESLENIRKILTGESVVTRLETVRQRSDGSL 170

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK-------MEIEVMQLCSILEATSD 463
           L ++       +     +  + I  +  + +  +R+       +    M+  +++E  +D
Sbjct: 171 LDVSLTVSPILDVRGNVIALSAICRDISERKQAERERHRLHQQLRDSEMKYRALIEQATD 230

Query: 464 GIAI--INREG---IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
            + +  +N +      +  N    + FGY  E++L   F+  + Q++  ++   L +I  
Sbjct: 231 AVYVVELNEDNAPSRFIEVNPVGCRRFGYSREELLSLSFSNIVPQDSQMIVR-LLEKIKK 289

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578
            +   TL+   +  T +       + +  L     +     DI+E  + +  L  ++K+A
Sbjct: 290 GETSFTLQDEYVFPTGKVITTEFSVRVFNLNGKKVFLSISRDITERLKTEELLRKSEKLA 349

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
                        ++HEI  PLTA+ GF +++K+       N     Y N I      + 
Sbjct: 350 VV-----GQLATVMAHEINNPLTAMKGFMQLLKSTE-----NENNQGYINIISSEIERIE 399

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
            I  + + ++K +  KM  +    ++   + + + L+Q  A    I  R      IP I 
Sbjct: 400 SITTEFMAVAKPQVVKMQPN----NMSVLMDQVLMLLQPQAMMNNIKFRIDLNPGIPLIS 455

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
            +   +KQ+ +NIL NAI   P GG+I+I      N +V +R  D G G+    +    +
Sbjct: 456 CEGNQLKQVFVNILKNAIESMPMGGEILIQINILDNNQVSIRFIDQGCGIPKERIPYLGE 515

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           PF        I+ EG GLGL +   +++ + GK +I S   KGT +E+  P+
Sbjct: 516 PFY------SIKEEGIGLGLMICYKIIETHQGKIFIKSEMNKGTTVEVTLPI 561



 Score =  108 bits (269), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 70/202 (34%), Gaps = 9/202 (4%)

Query: 392 TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV 451
                   +  + W  + ++ +         +  + +   G   +  + +  + ++    
Sbjct: 28  QAWEGKEIIFELPWPNDKTIILI--ALRPIKRNGQVIEVVGSTVDITERKKVESELRATK 85

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
             L S ++   D I I +REG IL  N+A  K+FG+  ++I  K     +          
Sbjct: 86  ELLESFIKHNLDAITISDREGHILQANKAYEKIFGWSSQEIRGKRL-PCVPDFLMEESLE 144

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS----LTMHDISEWKQE 567
            + +IL           T+    +  LL + + +  +               DISE KQ 
Sbjct: 145 NIRKIL-TGESVVTRLETVRQRSDGSLLDVSLTVSPILDVRGNVIALSAICRDISERKQA 203

Query: 568 KNKLSHAKKIAEKESSHKSDFL 589
           + +     +   ++S  K   L
Sbjct: 204 ERERHRLHQQL-RDSEMKYRAL 224



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 38/286 (13%), Positives = 83/286 (29%), Gaps = 23/286 (8%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG-KTT 148
           D  G++ + ++   K  G  + ++ G RL  V D L  +   +I  +L  ++     +T 
Sbjct: 103 DREGHILQANKAYEKIFGWSSQEIRGKRLPCVPDFLMEESLENIRKILTGESVVTRLETV 162

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +G+ L V + ++  PI              I               RL ++     
Sbjct: 163 RQRSDGSLLDVSLTVS--PILDVRGNVIALS--AICRDISERKQAERERHRLHQQLRDSE 218

Query: 209 EIKKGHSSVEKEKYDIFSQQS-----------PPPHLR---MKNKVSSLTEY-YAHKDDV 253
              +       +   +                P    R    + ++ SL+      +D  
Sbjct: 219 MKYRALIEQATDAVYVVELNEDNAPSRFIEVNPVGCRRFGYSREELLSLSFSNIVPQDSQ 278

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
           +       +   E+S   Q+++        T +               +LS     +   
Sbjct: 279 MIVRLLEKIKKGETSFTLQDEYVFPTGKVITTEFSVRVFN--LNGKKVFLSISRDITERL 336

Query: 314 YFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVD 358
             +E    + +      +     +   N   A   F+ L K    +
Sbjct: 337 KTEELLRKSEKLAVVGQLATVMAHEINNPLTAMKGFMQLLKSTENE 382


>gi|320174576|gb|EFW49712.1| Aerobic respiration control sensor protein arcB [Shigella
           dysenteriae CDC 74-1112]
          Length = 778

 Score =  324 bits (830), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 86/438 (19%), Positives = 180/438 (41%), Gaps = 21/438 (4%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L +           L  +Q     +     I   +  +         ++ E
Sbjct: 81  EESRQRLSRLVQKLEEMRERDLSL-NVQLKDNIAQLNQEIAVREKAEAELQETFGQLKIE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             +    + ++E +   L S L+A+ D +   N +      NRA+  L G   + ++   
Sbjct: 140 IKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCY 554
                     + +     ++   ++  T E+        +    +R +    ++      
Sbjct: 200 PADVYSPEAAAKVIETDEKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGL 259

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+        +   E+ S  K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 260 MGFGRDITERKR-------YQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE 312

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     +Y   I  S   + +I ND++D+ K+E  K+ L  +PV     +++  +L
Sbjct: 313 LTA----EQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENL 368

Query: 675 VQLYANEKRILIRTSFANNIP---RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
             L A +K   +R +    +P   +++ D   ++QI  N++SNA+ FT  G Q+ +   +
Sbjct: 369 SALQAQQKG--LRFNLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQG-QVTVRVRY 425

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMG 790
              + +   V D+G+G+   EL+K    + Q+ +S   +   GTG+GL +++ +     G
Sbjct: 426 DEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGG 485

Query: 791 KFYIFSTPAKGTLIEIIF 808
              + S   KG+   +  
Sbjct: 486 DITVTSEQGKGSTFTLTI 503


>gi|194434503|ref|ZP_03066763.1| aerobic respiration control sensor protein ArcB [Shigella
           dysenteriae 1012]
 gi|194417282|gb|EDX33391.1| aerobic respiration control sensor protein ArcB [Shigella
           dysenteriae 1012]
 gi|320181485|gb|EFW56403.1| Aerobic respiration control sensor protein arcB [Shigella boydii
           ATCC 9905]
 gi|332086332|gb|EGI91484.1| aerobic respiration control sensor protein arcB [Shigella boydii
           5216-82]
 gi|332086398|gb|EGI91545.1| aerobic respiration control sensor protein arcB [Shigella
           dysenteriae 155-74]
          Length = 778

 Score =  324 bits (830), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 86/438 (19%), Positives = 180/438 (41%), Gaps = 21/438 (4%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L +           L  +Q     +     I   +  +         ++ E
Sbjct: 81  EESRQRLSRLVQKLEEMRERDLSL-NVQLKDNIAQLNQEIAVREKAEAELQETFGQLKIE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             +    + ++E +   L S L+A+ D +   N +      NRA+  L G   + ++   
Sbjct: 140 IKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCY 554
                     + +     ++   ++  T E+        +    +R +    ++      
Sbjct: 200 PADVYSPEAAAKVIETDEKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGL 259

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+        +   E+ S  K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 260 MGFGRDITERKR-------YQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE 312

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     +Y   I  S   + +I ND++D+ K+E  K+ L  +PV     +++  +L
Sbjct: 313 LTA----EQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENL 368

Query: 675 VQLYANEKRILIRTSFANNIP---RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
             L A +K   +R +    +P   +++ D   ++QI  N++SNA+ FT  G Q+ +   +
Sbjct: 369 SALQAQQKG--LRFNLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQG-QVTVRVRY 425

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMG 790
              + +   V D+G+G+   EL+K    + Q+ +S   +   GTG+GL +++ +     G
Sbjct: 426 DEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGG 485

Query: 791 KFYIFSTPAKGTLIEIIF 808
              + S   KG+   +  
Sbjct: 486 DITVTSEQGKGSTFTLTI 503


>gi|227894304|ref|ZP_04012109.1| histidine kinase [Lactobacillus ultunensis DSM 16047]
 gi|227863881|gb|EEJ71302.1| histidine kinase [Lactobacillus ultunensis DSM 16047]
          Length = 621

 Score =  324 bits (830), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 85/396 (21%), Positives = 174/396 (43%), Gaps = 33/396 (8%)

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
           ++  +           ++    +   + E  +L S+L   SDG+   +R G +   N   
Sbjct: 238 DELGQLGHAFNTLSVRIERSQEES--DSERRRLDSVLSHMSDGVLATDRHGNVSVVNHTA 295

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
                   +D++ KP    L     S       +++S      +        +     S 
Sbjct: 296 LSYLNVKEKDVINKPIAEVLGLKDRSS-----QDLISSQKEIVITIDEGTRDEMILHASF 350

Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
            +I +   F S     +HD++E ++ ++               +  F++ VSHE+RTPLT
Sbjct: 351 SLIKRVTGFVSGSVCVLHDVTEQQKNED--------------SQRQFVSNVSHELRTPLT 396

Query: 602 AIIGFSEVIKNQRFGPLGNPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
           ++  + E +     G   +P+   ++     +  + ++ ++NDLL +S+++ G   +  E
Sbjct: 397 SLQAYIEALNE---GAWKDPKIAPKFLEVTQQETSRMIRMINDLLSLSRMDRGVSKMDLE 453

Query: 661 PVSLDEAVSEAISLV-------QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713
            V+L++ V+  ++         +  +++K+  I     +    +  D   + Q+  NI++
Sbjct: 454 FVNLNDFVNHILNRFDMIVKTDKNKSHKKKYTINRELGSQALWVEIDTDKMMQVIDNIMN 513

Query: 714 NAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
           NAI ++P GG I +  T   N  VIL + D G+G+   +L K    F ++  ++     G
Sbjct: 514 NAIKYSPDGGVITVRLTQNQN-HVILSISDQGLGIPRKDLGKIFDRFYRVDKARSRAQGG 572

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           TGLGL +AK +V+A+ G+ +  S+  +G+   I  P
Sbjct: 573 TGLGLAIAKEIVEAHHGRIWADSSEGRGSTFYISLP 608


>gi|197334363|ref|YP_002156093.1| sensor protein LuxQ [Vibrio fischeri MJ11]
 gi|197315853|gb|ACH65300.1| sensor protein LuxQ [Vibrio fischeri MJ11]
          Length = 692

 Score =  324 bits (830), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 94/376 (25%), Positives = 170/376 (45%), Gaps = 20/376 (5%)

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
           +  +++ +   +     E   D     + +      +             I+ +     +
Sbjct: 191 LKTKELFLSKERFQDFAETVGDWFWETDPQFNFTYLSD-----TKINNTSIISQNLLSLI 245

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLT 557
             +  +        I S    +   ++          + L +  K           Y  T
Sbjct: 246 SNDFINSTI-----IESEKRLEPFHEVEWNPDIFNNKVWLSLSGKPFFDEFGTFVGYRGT 300

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
             DIS  K+    +  AK  AEK +  KS FLA +SHEIRTPL +I+G  ++      G 
Sbjct: 301 AKDISARKKRIKDIQTAKTEAEKANKAKSQFLAMMSHEIRTPLNSILGLVDI----FHGS 356

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
           L +   +++ N ++ S  L+L I++D+LDIS+IE+G   L+ +P+ L  +++ +I+ +  
Sbjct: 357 LLSEEQLDWLNQMESSSQLLLTIISDVLDISRIEAGTFVLNEQPIDLLRSLNTSINFLDT 416

Query: 678 YANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
            A +K I +  + + N+P+ + AD   + Q+  N++ NAI FT  G  + +      N  
Sbjct: 417 RAKDKGITLTVTASQNVPKYVFADATRLSQVIFNLVGNAIKFTNHG-HVAVKIEKLPNNS 475

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           + + V DTG+G+ +  LE+  KPF Q  +S   +  GTGLGL + K +V+   G   + S
Sbjct: 476 ISISVSDTGIGIASTTLEQLFKPFVQADSSITRKYGGTGLGLAIIKRLVELMQGTITVES 535

Query: 797 TPAKGTLIEIIFPLYD 812
               G+  +I  PL +
Sbjct: 536 RLNVGSTFKITLPLKE 551



 Score = 45.0 bits (105), Expect = 0.056,   Method: Composition-based stats.
 Identities = 19/139 (13%), Positives = 38/139 (27%), Gaps = 11/139 (7%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK 146
           W  D       +S+            +I   L  +     I+    I +  KR   +   
Sbjct: 215 WETDPQFNFTYLSD-----TKINNTSIISQNLLSLISNDFINST--IIESEKRLEPF--H 265

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
              W  +  N  V + L+  P +     F G+RG                 +    +   
Sbjct: 266 EVEWNPDIFNNKVWLSLSGKPFFDEFGTFVGYRG--TAKDISARKKRIKDIQTAKTEAEK 323

Query: 207 LHEIKKGHSSVEKEKYDIF 225
            ++ K    ++   +    
Sbjct: 324 ANKAKSQFLAMMSHEIRTP 342


>gi|332752371|gb|EGJ82761.1| aerobic respiration control sensor protein arcB [Shigella flexneri
           4343-70]
 gi|333000305|gb|EGK19888.1| aerobic respiration control sensor protein arcB [Shigella flexneri
           K-218]
          Length = 778

 Score =  324 bits (830), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 86/438 (19%), Positives = 180/438 (41%), Gaps = 21/438 (4%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L +           L  +Q     +     I   +  +         ++ E
Sbjct: 81  EESRQRLSRLVQKLEEMRERDLSL-NVQLKDNIAQLNQEIAVREKAEAELQETFGQLKIE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             +    + ++E +   L S L+A+ D +   N +      NRA+  L G   + ++   
Sbjct: 140 IKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCY 554
                     + +     ++   ++  T E+        +    +R +    ++      
Sbjct: 200 PADVYSPEAAAKVIETDEKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGL 259

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+        +   E+ S  K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 260 MGFGRDITERKR-------YQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE 312

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     +Y   I  S   + +I ND++D+ K+E  K+ L  +PV     +++  +L
Sbjct: 313 LTA----EQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENL 368

Query: 675 VQLYANEKRILIRTSFANNIP---RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
             L A +K   +R +    +P   +++ D   ++QI  N++SNA+ FT  G Q+ +   +
Sbjct: 369 SALQAQQKG--LRFNLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQG-QVTVRVRY 425

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMG 790
              + +   V D+G+G+   EL+K    + Q+ +S   +   GTG+GL +++ +     G
Sbjct: 426 DEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGG 485

Query: 791 KFYIFSTPAKGTLIEIIF 808
              + S   KG+   +  
Sbjct: 486 DITVTSEQGKGSTFTLTI 503


>gi|332702425|ref|ZP_08422513.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332552574|gb|EGJ49618.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 1143

 Score =  324 bits (830), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 128/795 (16%), Positives = 259/795 (32%), Gaps = 97/795 (12%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP----NNHIGDLLKRQNT 142
           ++ D  G + + +      +G     ++G                              T
Sbjct: 85  FSFDRSGTILQANLAGADLLGVQREYLLGRSFTAFVAEEDQSAFLAHGEAAFASSATAAT 144

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALP-------IYSRNREFSGFRGFGIVHVNRVDNDPRA 195
              +  L P  G   +V I  A +P       + SR+  F        V           
Sbjct: 145 ARCELRLSPRGGGVRHVQIASAVMPDRPDALGLSSRDGRFC----LSAVQDITARVQADR 200

Query: 196 LGKRLDKKFSHLHEIKK----------GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE 245
             K  ++K+  + E              ++SV      +   +SP   L      +    
Sbjct: 201 ALKDSEEKYRGIFENAPLGIFRATRQQSYTSVNPAFARMHGYESPAQLLAETGDAACRYC 260

Query: 246 YYAHKDDV-LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL- 303
               +    L       L + + S   +      +  ++             +  +E   
Sbjct: 261 ADPAERQRFLDRVDSQGLVANQESCRLR-----RDGTKFWALTTLKAAGTPQEPYYEGFV 315

Query: 304 -SHRNHPSLSAYFDEGENLTPETVDKC-PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIE 361
                  +        E       +    +   +  +  +   N     +T Y   D + 
Sbjct: 316 ADISQRKAAEEALRRSETRFRSLFETAGSLIVLLDVNLRILEFNRKAEQVTGYARSDVLG 375

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                STL       +  A    ++       +        ++        + +      
Sbjct: 376 QE--FSTLFAPEAREELGARLLSVIGHRRERDLE-----QVVRGRDGRISVILWNMTRLE 428

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE----------ATSDGIA--IIN 469
                      +  +    ++ ++++ +   +L ++L             ++ +    ++
Sbjct: 429 GSPESLNGVIAVGQDITAQKMAEKQLRLNQARLEALLSLFQVEDRQARDMAEYVLGQAVD 488

Query: 470 ----REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
                 G IL       +        +  +   V  + +  S ++   +          +
Sbjct: 489 LTGSEAGRILLA--TGEEDLDIVTTGLPGRECPVTKQAHDLSALSGVWSIAARSKRPLVI 546

Query: 526 E----KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH-----------DISE------- 563
                +       E      R++I  +  S                   D  +       
Sbjct: 547 NDYARRSRRRPLPEGHPPLRRLLIAPVLDSGRVVAMAAVANKAAPYDQLDAKQLMLLLEG 606

Query: 564 ------WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
                  KQ   ++  AK+ AE  S  KS+FLA +SHEIRTP++ I+G ++V+   R   
Sbjct: 607 LWAHVKRKQATLEILQAKEQAEAASRAKSEFLANMSHEIRTPISGILGMADVLLTTRL-- 664

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
               R  +Y   +  S N +L I+ND+LD+SKIE+ K+ L  E  +LD A+   +    L
Sbjct: 665 --EDRQAQYIALLKDSANALLIIINDILDLSKIEARKLKLEPELFNLDAALRAVVDPFVL 722

Query: 678 YANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS--- 733
              +K + +       +P  +  D   + QI  N+LSNA+ FT  GG + +         
Sbjct: 723 QTVKKGLGLEVHLDPGLPPKLHGDPIRLGQILTNLLSNALKFTSRGG-VTLRVVPVQVSG 781

Query: 734 -NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
            + E+   V+DTG+G+ + + ++  + F Q+ +S   +  GTGLGL ++K  V+   G+ 
Sbjct: 782 VDCELRFEVQDTGLGIPSDKQDRLFRSFSQLDSSYAKQYCGTGLGLAISKNFVEMMGGRI 841

Query: 793 YIFSTPAKGTLIEII 807
           ++ S   +G+L    
Sbjct: 842 WVESIEGQGSLFAFT 856



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 46/328 (14%), Positives = 82/328 (25%), Gaps = 15/328 (4%)

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA---YFDEG 318
            T        +     +                   E++E    R    L+      +  
Sbjct: 10  ATLAALRRKAELLLARLEAGLSGPDHLVLRELLRELEAYEAGLQRQDLRLAQIQGELEAS 69

Query: 319 ENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
            +L     D  PI FF +   G +  AN +   L   +    +  +        A +   
Sbjct: 70  RDLYSRLHDFAPIGFFSFDRSGTILQANLAGADLLGVQREYLLGRSFTA---FVAEEDQS 126

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF------IPFEKANQFPENMPQN 431
                    + S  T   A   L                      P        +     
Sbjct: 127 AFLAHGEAAFASSATAATARCELRLSPRGGGVRHVQIASAVMPDRPDALGLSSRDGRFCL 186

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY--PV 489
               +        R ++    +   I E    GI    R+    S N A +++ GY  P 
Sbjct: 187 SAVQDITARVQADRALKDSEEKYRGIFENAPLGIFRATRQQSYTSVNPAFARMHGYESPA 246

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
           + +             P+    +L  + S  L    E   L     +      +     P
Sbjct: 247 QLLAETGDAACRYCADPAERQRFLDRVDSQGLVANQESCRLRRDGTKFWALTTLKAAGTP 306

Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKI 577
               Y   + DIS+ K  +  L  ++  
Sbjct: 307 QEPYYEGFVADISQRKAAEEALRRSETR 334



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 30/305 (9%), Positives = 73/305 (23%), Gaps = 18/305 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTW-- 143
            +          ++    +  G  +   +     D +     DP       L R ++   
Sbjct: 220 IFRATRQQSYTSVNPAFARMHGYESPAQLLAETGDAACRYCADPAER-QRFLDRVDSQGL 278

Query: 144 --YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
               ++     +GT  +    L A        +   + GF  V             +R +
Sbjct: 279 VANQESCRLRRDGTKFWALTTLKAA----GTPQEPYYEGF--VADISQRKAAEEALRRSE 332

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEKY 259
            +F  L E       +      I         +    ++ V           +  +    
Sbjct: 333 TRFRSLFETAGSLIVLLDVNLRILEFNRKAEQVTGYARSDVLGQEFSTLFAPEAREELGA 392

Query: 260 PLLT--SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
            LL+          ++     +            L+ + +     ++     +     ++
Sbjct: 393 RLLSVIGHRRERDLEQVVRGRDGRISVILWNMTRLEGSPESLNGVIAVGQDITAQKMAEK 452

Query: 318 GENLTPETVDKCPIPFFVYS---HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
              L    ++     F V          Y     + LT  ++   +   G     +    
Sbjct: 453 QLRLNQARLEALLSLFQVEDRQARDMAEYVLGQAVDLTGSEAGRILLATGEEDLDIVTTG 512

Query: 375 LSDNN 379
           L    
Sbjct: 513 LPGRE 517


>gi|300918972|ref|ZP_07135527.1| PAS domain S-box [Escherichia coli MS 115-1]
 gi|300413914|gb|EFJ97224.1| PAS domain S-box [Escherichia coli MS 115-1]
          Length = 778

 Score =  324 bits (830), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 86/438 (19%), Positives = 180/438 (41%), Gaps = 21/438 (4%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L +           L  +Q     +     I   +  +         ++ E
Sbjct: 81  EESRQRLSRLVQKLEEMRERDLSL-NVQLKDNIAQLNQEIAVREKAEAELQETFGQLKIE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             +    + ++E +   L S L+A+ D +   N +      NRA+  L G   + ++   
Sbjct: 140 IKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLIHLK 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCY 554
                     + +     ++   ++  T E+        +    +R +    ++      
Sbjct: 200 PADVYSPEAAAKVIETDEKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGL 259

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+        +   E+ S  K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 260 MGFGRDITERKR-------YQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE 312

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     +Y   I  S   + +I ND++D+ K+E  K+ L  +PV     +++  +L
Sbjct: 313 LTA----EQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENL 368

Query: 675 VQLYANEKRILIRTSFANNIP---RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
             L A +K   +R +    +P   +++ D   ++QI  N++SNA+ FT  G Q+ +   +
Sbjct: 369 SALQAQQKG--LRFNLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQG-QVTVRVRY 425

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMG 790
              + +   V D+G+G+   EL+K    + Q+ +S   +   GTG+GL +++ +     G
Sbjct: 426 DEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGG 485

Query: 791 KFYIFSTPAKGTLIEIIF 808
              + S   KG+   +  
Sbjct: 486 DITVTSEQGKGSTFTLTI 503


>gi|228908873|ref|ZP_04072704.1| hypothetical protein bthur0013_30300 [Bacillus thuringiensis IBL
           200]
 gi|228850740|gb|EEM95563.1| hypothetical protein bthur0013_30300 [Bacillus thuringiensis IBL
           200]
          Length = 801

 Score =  324 bits (830), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 103/532 (19%), Positives = 211/532 (39%), Gaps = 47/532 (8%)

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVD-----KCPIPFFVYSHGNLFYANPSFLLL 351
            +  E +      +     +   + T E ++                G++  AN ++  +
Sbjct: 294 GQVIEVVGSTVDITERKKVESELSATKELLESFIKHNLDAITISDREGHILQANKAYEKI 353

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ-WNRENS 410
             + S + I            P + D    + +   +   T  +   RL T++  +  + 
Sbjct: 354 FGWSSQEIIGKRL--------PCVPDFLMEESLKNIQKILTGESVVTRLETVRQRSDGSL 405

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK-------MEIEVMQLCSILEATSD 463
           L ++       +     +  + I  +  + +  +R+       +    M+  +++E  +D
Sbjct: 406 LDVSLTVSPILDVRGNVIALSAICRDISERKQAERERHRLHQQLRDSEMKYRALIEQATD 465

Query: 464 GIAII-----NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
            + ++     N     +  N    + FGY  E++L   F+  + Q++  ++   L +I  
Sbjct: 466 AVYVVELNEENAPSRFIEVNPVGCRRFGYSREELLSLSFSNIVPQDSQMIVR-LLEKIKK 524

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578
                TL+   +  T +       + +  L     +     DI+E  + +  L  ++K+A
Sbjct: 525 GQTSFTLQDEYVFPTGKVITTEFSVRVFNLNGKKVFLSISRDITERLKTEELLRKSEKLA 584

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
                        ++HEI  PLTA+ GF +++K+       N     Y N +      + 
Sbjct: 585 VV-----GQLATVMAHEINNPLTAMKGFMQLLKSTE-----NENNQGYINIVSSEIERIE 634

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
            I  + + ++K +  KM  +    ++   + + + L+Q  A    I  R      IP I 
Sbjct: 635 SITTEFMAVAKPQVVKMQPN----NISVLMDQVLMLLQPQAMMNNIKFRIDLNPGIPLIS 690

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
            +   +KQ+ +NIL NAI   P GG+I+I      N +V +R  D G G+    +    +
Sbjct: 691 CEGNQLKQVFVNILKNAIESMPMGGEILIQINILDNNQVSIRFIDQGCGIPKERIPYLGE 750

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           PF        I+ EG GLGL +   +++ + GK +I S   KGT++E+  P+
Sbjct: 751 PFY------SIKEEGIGLGLMICYKIIETHQGKVFIESEVNKGTIVEVTLPI 796



 Score =  108 bits (269), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 44/286 (15%), Positives = 91/286 (31%), Gaps = 21/286 (7%)

Query: 313 AYFDEGENLTPETVDKCPIPFF----VYSHGNLFYANPSFLLLTKYKSVDDIEI-AGGLS 367
               + +    +TV +     F    V  H      +  F     + S   +      + 
Sbjct: 186 RELKKSKQELADTVHELQGGIFKFKKVGKHFIHTLCDGQFYYQNGFYSEQVVGKSLRTID 245

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
             +  P L          L   +   I        + W  + ++ +         +  + 
Sbjct: 246 ASIVPPHLVPQLMKY--YLQAWEGKEIIFE-----LPWPNDKTIILI--ALRPIKRNGQV 296

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
           +   G   +  + +  + ++      L S ++   D I I +REG IL  N+A  K+FG+
Sbjct: 297 IEVVGSTVDITERKKVESELSATKELLESFIKHNLDAITISDREGHILQANKAYEKIFGW 356

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
             ++I+ K     +           + +IL           T+    +  LL + + +  
Sbjct: 357 SSQEIIGKRL-PCVPDFLMEESLKNIQKIL-TGESVVTRLETVRQRSDGSLLDVSLTVSP 414

Query: 548 LPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
           +               DISE KQ + +     +   ++S  K   L
Sbjct: 415 ILDVRGNVIALSAICRDISERKQAERERHRLHQQL-RDSEMKYRAL 459



 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/286 (12%), Positives = 83/286 (29%), Gaps = 23/286 (8%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG-KTT 148
           D  G++ + ++   K  G  + ++IG RL  V D L  +   +I  +L  ++     +T 
Sbjct: 338 DREGHILQANKAYEKIFGWSSQEIIGKRLPCVPDFLMEESLKNIQKILTGESVVTRLETV 397

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +G+ L V + ++  PI              I               RL ++     
Sbjct: 398 RQRSDGSLLDVSLTVS--PILDVRGNVIALS--AICRDISERKQAERERHRLHQQLRDSE 453

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLR--------------MKNKVSSLTEY-YAHKDDV 253
              +       +   +          R               + ++ SL+      +D  
Sbjct: 454 MKYRALIEQATDAVYVVELNEENAPSRFIEVNPVGCRRFGYSREELLSLSFSNIVPQDSQ 513

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
           +       +   ++S   Q+++        T +               +LS     +   
Sbjct: 514 MIVRLLEKIKKGQTSFTLQDEYVFPTGKVITTEFSVRVFN--LNGKKVFLSISRDITERL 571

Query: 314 YFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVD 358
             +E    + +      +     +   N   A   F+ L K    +
Sbjct: 572 KTEELLRKSEKLAVVGQLATVMAHEINNPLTAMKGFMQLLKSTENE 617


>gi|91202234|emb|CAJ75294.1| similar to histidine kinase [Candidatus Kuenenia stuttgartiensis]
          Length = 395

 Score =  324 bits (830), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 97/259 (37%), Positives = 148/259 (57%), Gaps = 4/259 (1%)

Query: 559 HDISEWKQEKN--KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
             + E K ++    L       EK    KS+FLA +SHE+RTPL AIIGF+EV+K+   G
Sbjct: 135 RHLLEKKVQEKTSDLQKTNIALEKAYRLKSEFLATMSHELRTPLNAIIGFAEVLKDGLVG 194

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
           P+ N    EY + I  SG  +L+++N++LDISKIE+GK+ L +E + + E + + ++ V 
Sbjct: 195 PI-NDEQREYVDDIYSSGKHLLNMINNVLDISKIEAGKLELKYEEICVKETIDDVLNTVS 253

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
             AN+K I I+ +  ++IP  + D   +KQI  N+LSNAI FTP  G + I TT      
Sbjct: 254 GIANKKNITIKNTIQSDIPTFVVDQLKLKQILFNLLSNAIKFTPKNGNVCIDTTLKDL-Y 312

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           V   + DTG+G+   ++EK  + F Q+ +S     EG GL L L K +V+ + G+ ++ S
Sbjct: 313 VQFAIADTGIGIKQEDIEKIFEAFSQVDSSLARNYEGAGLSLALTKRLVELHGGEIWVES 372

Query: 797 TPAKGTLIEIIFPLYDTSH 815
              KG+    I PL   + 
Sbjct: 373 FYGKGSTFTFILPLRPPNQ 391


>gi|331664824|ref|ZP_08365729.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           TA143]
 gi|331058072|gb|EGI30054.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           TA143]
          Length = 778

 Score =  324 bits (830), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 86/438 (19%), Positives = 180/438 (41%), Gaps = 21/438 (4%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L +           L  +Q     +     I   +  +         ++ E
Sbjct: 81  EESRQRLSRLVQKLEEMRERDLSL-NVQLKDNIAQLNQEIAVREKAEAELQETFGQLKIE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             +    + ++E +   L S L+A+ D +   N +      NRA+  L G   + ++   
Sbjct: 140 IKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCY 554
                     + +     ++   ++  T E+        +    +R +    ++      
Sbjct: 200 PADVYSPEAAAKVIETDEKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGL 259

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+        +   E+ S  K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 260 MGFGRDITERKR-------YQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE 312

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     +Y   I  S   + +I ND++D+ K+E  K+ L  +PV     +++  +L
Sbjct: 313 LTT----EQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENL 368

Query: 675 VQLYANEKRILIRTSFANNIP---RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
             L A +K   +R +    +P   +++ D   ++QI  N++SNA+ FT  G Q+ +   +
Sbjct: 369 SALQAQQKG--LRFNLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQG-QVTVRVRY 425

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMG 790
              + +   V D+G+G+   EL+K    + Q+ +S   +   GTG+GL +++ +     G
Sbjct: 426 DEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGG 485

Query: 791 KFYIFSTPAKGTLIEIIF 808
              + S   KG+   +  
Sbjct: 486 DITVTSEQGKGSTFTLTI 503


>gi|108763883|ref|YP_632940.1| sensory box histidine kinase PhoR1 [Myxococcus xanthus DK 1622]
 gi|4467966|emb|CAB37946.1| histidine kinase PhoR1 [Myxococcus xanthus]
 gi|108467763|gb|ABF92948.1| sensory box histidine kinase PhoR1 [Myxococcus xanthus DK 1622]
          Length = 454

 Score =  324 bits (830), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 95/429 (22%), Positives = 186/429 (43%), Gaps = 29/429 (6%)

Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
             + +  +   AR    +     S A   +P             + +  +          
Sbjct: 49  RGTMQRQLDLLARHTRERAEGGASTAAPGVPERLDEVAGLEGAIDSLHAQLSAR---NAA 105

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
           +  E   L ++L+  ++G+ + + EG ++  N A+  L       +  +     +     
Sbjct: 106 LTQEARTLTAVLDGMTEGVWVTDAEGTVVRHNDALRPLLASTNSPLTGQRPLALIRNE-- 163

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQ 566
             ++  +           LE    G     + LS+R+           +   HD++E ++
Sbjct: 164 -ALHDAVMRACRESASSHLELTLDGHFP--RTLSIRVTPLA-KDLPGSAAVFHDVTELRR 219

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI-E 625
            +                + DF+A VSHE+RTP+TAI G++E ++    G L +P    +
Sbjct: 220 LE--------------KVRKDFVANVSHELRTPITAIRGYAETLQ---GGALNDPVMAPK 262

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
               I R    + ++V DLL++S++ES +++L    V+L +A + A   V+  A  K  +
Sbjct: 263 MVEIIHRQSERLSELVEDLLELSRLESREVSLKLARVTLADAAARAADTVRPKAGGKGQV 322

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +      ++  +  D R+V+Q+ LN+L NA+ +TP+GG++ +   +      ++RV+DTG
Sbjct: 323 VSLHVPQDLLAV-GDPRAVEQVLLNLLDNAVKYTPAGGRVDVYGEYE-QGRCVVRVKDTG 380

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           VG+      +  + F ++   +     GTGLGL + K ++ A  G+  + S P  G+   
Sbjct: 381 VGIEAKHQSRIFERFYRVDKGRSRDMGGTGLGLAIVKHLLQAMDGEVKVESEPNGGSTFT 440

Query: 806 IIFPLYDTS 814
           I  PL  +S
Sbjct: 441 IFLPLAASS 449


>gi|78357811|ref|YP_389260.1| multi-sensor hybrid histidine kinase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78220216|gb|ABB39565.1| multi-sensor hybrid histidine kinase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 773

 Score =  324 bits (830), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 106/575 (18%), Positives = 209/575 (36%), Gaps = 51/575 (8%)

Query: 278 INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS 337
               +           + + + F         + +   +  +  +    DK   P     
Sbjct: 42  SRTERLLHALVLQRENDLANQIFVGHIRALRSTAADLQETDDVYSITVYDKSGKPLIHTR 101

Query: 338 HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD--------------------APKLSD 377
                    + + +     VD      G+  L                      +    D
Sbjct: 102 PERPLPLTGAEMAILAQGDVDARGTENGVPLLYHTSALMVIGELQGFVTVAYDLSHVRRD 161

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
              +  ++      T IAA                          +  E   +  IE +D
Sbjct: 162 TILLSAMLTILLLGTVIAAGMVCSHFITQHIRRPLTALRDAMHRARSGELQHRAPIEAQD 221

Query: 438 VDTRINK------RKMEIEVMQLC-------SILEATSDGIAIINREGIILSTNRAVSKL 484
              R+ +        ++     L         I E   +GI  I   G +++ N A++++
Sbjct: 222 EVGRLAESFNAMVATLQRNESSLRHAQTIYKDIFENALEGIFQITGRGYLINANPALARM 281

Query: 485 FGYPV--EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
            GY    E +  +  T          +   L  + +       E            +S+ 
Sbjct: 282 LGYSSVMELLAERGTTPLKSLVNRRDLARMLRMLRAKGAVDGYETRVYTKGGGITWISVS 341

Query: 543 IIIKKLPFSS-----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
                   +       Y   + DI+E ++   +L   +    +    KSDFLA +SHEIR
Sbjct: 342 ARTIAKEETGQPESFRYEGFVKDITEHRRL-RELEQTRTAMIEADKAKSDFLAHMSHEIR 400

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TP+ +++G +E +              E  + +  SG  +L ++ND+LD++++E G++ L
Sbjct: 401 TPMNSVLGMAEQMLRTPLSA----EQKECMDVLKNSGESLLHLINDILDLTRVEGGQLAL 456

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAI 716
              P ++   V     ++ L A +K IL+  + A ++    + D + ++QI +N+L NA+
Sbjct: 457 ASAPFTVHAVVYGVRDMLSLQARQKNILLAATIAPDVRKNHMGDAQRLQQILVNLLGNAV 516

Query: 717 HFTPSGGQIIISTTHTSN----EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
            FT +G ++ +  +   +     +++  VRDTG+G+T  E  +  + F Q   +   R  
Sbjct: 517 KFTDNG-EVSLHVSRAPDAVHDGDLLFTVRDTGIGITPAEQSRLFQKFSQASTAIHSRYG 575

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           G+GLGL +++ +VD   G   + S P  GT +   
Sbjct: 576 GSGLGLAISRHLVDLMGGTIRLESEPGVGTTVTFT 610



 Score = 41.2 bits (95), Expect = 0.68,   Method: Composition-based stats.
 Identities = 17/133 (12%), Positives = 43/133 (32%), Gaps = 12/133 (9%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAF-KMIGM----RLCDVSDILHIDPNNHIGDLLKRQ 140
            + I   GYL   +  L + +G  +  +++       L  + +   +     +  L  + 
Sbjct: 262 IFQITGRGYLINANPALARMLGYSSVMELLAERGTTPLKSLVNRRDL--ARMLRMLRAKG 319

Query: 141 NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
                +T ++   G   ++ +    +       +   FR  G V             + L
Sbjct: 320 AVDGYETRVYTKGGGITWISVSARTIA-KEETGQPESFRYEGFVKDITEH----RRLREL 374

Query: 201 DKKFSHLHEIKKG 213
           ++  + + E  K 
Sbjct: 375 EQTRTAMIEADKA 387


>gi|206580641|ref|YP_002238911.1| sensory box histidine kinase/response regulator [Klebsiella
           pneumoniae 342]
 gi|206569699|gb|ACI11475.1| sensory box histidine kinase/response regulator [Klebsiella
           pneumoniae 342]
          Length = 897

 Score =  324 bits (830), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 97/501 (19%), Positives = 171/501 (34%), Gaps = 35/501 (6%)

Query: 326 VDKCPIPFFVYSH-GNLFYANPS--------FLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
           ++  P    +Y     L   N             L    +++ +      +     P   
Sbjct: 9   LNLLPSAVMIYDDRERLQAWNDKVALFYPTIAPWLAVGATLESLAEKFIDAGYNIDPGRQ 68

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
                  +   R    C         ++ +    + +                   +  +
Sbjct: 69  QTLREAIIRNCRQTNHC--------EVRQSGNRRIYIQHQRLADG-------GIVSLHTD 113

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR-K 495
             +    +R             E+   GI         L  N  +  + G          
Sbjct: 114 ITELDEARRSRHQLHDDFLFTAESIQIGIWDWQVSHDNLQVNDTLLAMVGQSRAQWRYPL 173

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR-----IIIKKLPF 550
            F + L                  +     E         +    +      + +     
Sbjct: 174 RFMLNLVHEDDRTTLQQAMIASQNEHMPVFECELRVQHPTQGWRWMLLSGQIVTLNMQQQ 233

Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
           +     T+ DI+  K  +     A K A + +  KS FLA +SHEIRTP+  I+G +++ 
Sbjct: 234 AERVIGTLQDITRRKAAELLAIEAAKEAREANEAKSAFLANMSHEIRTPMNGILGMTQLC 293

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
            +            EY + +  S   +L I+ND+LD S+IESGKM +  EP+ +   +  
Sbjct: 294 LDTPLTA----EQREYLSLVMSSAQSLLHIINDILDFSRIESGKMQVDEEPLEIRPFIQS 349

Query: 671 AISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
            I      A+EK I +    +  +P +L  D   ++QI  N+L NA+ FT  G  ++   
Sbjct: 350 LIRPHMPAASEKGIELLVDISPAVPEVLIVDGPRLRQILTNLLGNALKFTHQGEVLLAIA 409

Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
                     R+RDTG+G+   + +   + F Q  +S   R  GTGLGL ++  +V    
Sbjct: 410 PADDESRWRFRIRDTGIGIAPEKQKAIFEAFSQADSSTTRRYGGTGLGLTISARLVSLMG 469

Query: 790 GKFYIFSTPAKGTLIEIIFPL 810
           G+  + S P  G+      PL
Sbjct: 470 GELMVESQPGAGSEFAFTLPL 490


>gi|327538030|gb|EGF24720.1| multi-sensor hybrid histidine kinase [Rhodopirellula baltica WH47]
          Length = 1122

 Score =  324 bits (830), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 128/833 (15%), Positives = 282/833 (33%), Gaps = 93/833 (11%)

Query: 43  NPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEEL 102
              H S + S      Q   +  +        +   I   +     ID  G L E+ +  
Sbjct: 133 PGTHQSKQASLSEPAGQPKTARQSEAAEREAHLRRVINHQLGLVGVIDRDGILVEVDDRS 192

Query: 103 PKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEG---TNLY 158
            +        +IG    +             + + ++R   + G+   + +      +  
Sbjct: 193 LEIAKVAREDVIGKHFAEAPWWTYDPRVAARVREAMQR--AFAGEVVRFDVSLFAYGDDG 250

Query: 159 VPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVE 218
           V ID    P+ +   E       G     R  +      ++ ++    + E       + 
Sbjct: 251 VRIDFMIAPVINDEGEVEFLIPSGT--DIRDRHRAEVELRKSERLVRTIAENSTQGLVMM 308

Query: 219 KEKYDIFSQQSPPPHLRMKNK-------VSSLTEYYAHKDDVLKTEKYPLLTSEESSLP- 270
                +         +   +        +  L  ++          + P+  +       
Sbjct: 309 DATGHVIYCNQALLDMTGFDSEEIRSAPLHDLIHHHYPDGRPYPMSECPIDRALPEDFSV 368

Query: 271 --EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN---HPSLSAYFDEGENLTPET 325
              ++ F   + + ++       +  + K     +  R+     +             ++
Sbjct: 369 RAHEDLFFRKDGSSFSVVCAASPIFEDGKPVSTVIEVRDTTVQKAHEVELKRAAARLDKS 428

Query: 326 VDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
           +    I  + +      L    P    +  +    D+ +      +    +     +I  
Sbjct: 429 LAFAGIAAWGWDHSEQRLILDVP-LRRMWGFDDEKDVTLDDFAQRITPNHRDRVVASITN 487

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
            M         ++    +TI     N   +  I    A+         G+  +       
Sbjct: 488 AM------KTFSSYREEYTIDLPSGNQRWIRAIGQVVADGNGGIADFFGVTMDVTADLRR 541

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
           + K  +    L  + E       + +   I+    + + K F      +          +
Sbjct: 542 QVKARVRSELLEQLSE-------LTDPHAIMQLATQRIRKHFSASRCYLAYIRLDAQTTE 594

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKE-EKLLSLRIIIK---------------- 546
                 + +L+ I+     +           E  K + +  I +                
Sbjct: 595 VFHESHDEHLSPIVGTHQIRDFLNDHEMREIESGKPVRIDDISQSGRSSEKVQQFADLGI 654

Query: 547 ------------------------KLPFSSCYSLTMHDISE-------WKQEKNKLSHAK 575
                                      +       + +++E         + + +L  A+
Sbjct: 655 AAVTQGSFEATKVLHRTLFITKDKPYRWRDDEVRFLDNLTEMVYLRIERAESQLELEQAR 714

Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
            +AE  S  KS F+A +SHEIRTP+TAI+G+++++++     + +P+ IE+   I R+G+
Sbjct: 715 AVAEAASQSKSAFVANMSHEIRTPMTAILGYADLVRDM----IEDPQAIEHLETIRRNGD 770

Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695
            +L+I+ND+LD+SKIE+GK+ ++ E       + +  S++++ A E  + +   +   +P
Sbjct: 771 YLLEIINDILDLSKIEAGKLEVNHEKFEPARLIEDVRSIMEVRAKEGGLSLDVQYIGLLP 830

Query: 696 -RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELE 754
             I +D + +KQI +N++ NAI FT  G    +      N+ + + + DTG+GM++ + +
Sbjct: 831 KTIESDGKRLKQILINLVGNAIKFTQKG---WVQIRVRFNKWLHIDIVDTGIGMSDEQQK 887

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           +  KPF Q   S      GTGLGL ++K + +   G     ST   G+   + 
Sbjct: 888 RLFKPFSQGDASVTRTFGGTGLGLAISKRLTEMLGGTIIASSTEGVGSTFTVS 940



 Score =  113 bits (282), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 45/384 (11%), Positives = 108/384 (28%), Gaps = 19/384 (4%)

Query: 220 EKYDIFSQQSPPPHLRMKNKV-SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTI 278
                     P     + + +  S  E     +  L+         +   +P+++   +I
Sbjct: 61  ASTRWLDTVHPEDQRSVADALKDSRREGGVSVEFRLRRHDGAFTGVQVQGVPQRQAGGSI 120

Query: 279 N--LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY 336
           +  +   +     GT Q+      E          S   +   +L      +  +   + 
Sbjct: 121 DCWVLMSSAIDGPGTHQSKQASLSEPAGQPKTARQSEAAEREAHLRRVINHQLGLVGVID 180

Query: 337 SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA 396
             G L   +   L + K    D I                    ++  M        +  
Sbjct: 181 RDGILVEVDDRSLEIAKVAREDVI-GKHFAEAPWWTYDPRVAARVREAMQRAFAGEVVRF 239

Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
              L     +    + + F+     N   E         +  D    + ++      + +
Sbjct: 240 DVSLFAYGDDG---VRIDFMIAPVINDEGEVEFLIPSGTDIRDRHRAEVELRKSERLVRT 296

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           I E ++ G+ +++  G ++  N+A+  + G+  E+I   P    +  + P    + ++E 
Sbjct: 297 IAENSTQGLVMMDATGHVIYCNQALLDMTGFDSEEIRSAPLHDLIHHHYPDGRPYPMSEC 356

Query: 517 LSLDLR----QTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKN 569
                            L   K+    S+      +          + + D +  K  + 
Sbjct: 357 PIDRALPEDFSVRAHEDLFFRKDGSSFSVVCAASPIFEDGKPVSTVIEVRDTTVQKAHEV 416

Query: 570 KLSHAKKIAEKESSHKSDFLARVS 593
           +L             KS   A ++
Sbjct: 417 ELKR-----AAARLDKSLAFAGIA 435



 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 54/564 (9%), Positives = 143/564 (25%), Gaps = 41/564 (7%)

Query: 55  TDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI 114
           TD +   +       +           + R  W  D  G   E S       G    ++ 
Sbjct: 2   TDPDSPLIVGVGASVAGQEAFRLLAEASSRIVWIADCDGKFIEDSPSWRAFTGQTIDQLA 61

Query: 115 GMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVP-IDLAALPIYSRNR 173
             R  D            + D LK      G +  + +   +     + +  +P      
Sbjct: 62  STRWLDTVHPED---QRSVADALKDSRREGGVSVEFRLRRHDGAFTGVQVQGVPQRQAGG 118

Query: 174 EFSGFR-------GFGIVHVNRV---------DNDPRALGKRLDKKFSHLHEIKKGHSSV 217
               +        G G     +              ++     +     +   + G   V
Sbjct: 119 SIDCWVLMSSAIDGPGTHQSKQASLSEPAGQPKTARQSEAAEREAHLRRVINHQLGLVGV 178

Query: 218 EKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD--------DVLKTEKYPLLTSEESSL 269
                 +         +    +   + +++A                E      + E   
Sbjct: 179 IDRDGILVEVDDRSLEIAKVAREDVIGKHFAEAPWWTYDPRVAARVREAMQRAFAGEVVR 238

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESF---EYLSHRNHPSLSAYFDEGENLTPETV 326
            +   F   +            + +  +  F        R+         + E L     
Sbjct: 239 FDVSLFAYGDDGVRIDFMIAPVINDEGEVEFLIPSGTDIRDRHRAEVELRKSERLVRTIA 298

Query: 327 DKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
           +        + + G++ Y N + L +T + S ++I  A     +           +    
Sbjct: 299 ENSTQGLVMMDATGHVIYCNQALLDMTGFDS-EEIRSAPLHDLIHHHYPDGRPYPMSECP 357

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
           + R+     +  A          +S ++         +  + +       +    + ++ 
Sbjct: 358 IDRALPEDFSVRAHEDLFFRKDGSSFSVVCAASPIF-EDGKPVSTVIEVRDTTVQKAHEV 416

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGI--ILSTNRAVSKLFGYPVE-DILRKPFTVFLE 502
           +++    +L   L          +      IL     + +++G+  E D+    F   + 
Sbjct: 417 ELKRAAARLDKSLAFAGIAAWGWDHSEQRLILDV--PLRRMWGFDDEKDVTLDDFAQRIT 474

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHD 560
            N    +   +T  +        E      +  ++ +     +          +     D
Sbjct: 475 PNHRDRVVASITNAMKTFSSYREEYTIDLPSGNQRWIRAIGQVVADGNGGIADFFGVTMD 534

Query: 561 ISEWKQEKNKLSHAKKIAEKESSH 584
           ++   + + K     ++ E+ S  
Sbjct: 535 VTADLRRQVKARVRSELLEQLSEL 558


>gi|295688630|ref|YP_003592323.1| multi-sensor hybrid histidine kinase [Caulobacter segnis ATCC
           21756]
 gi|295430533|gb|ADG09705.1| multi-sensor hybrid histidine kinase [Caulobacter segnis ATCC
           21756]
          Length = 614

 Score =  324 bits (830), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 104/380 (27%), Positives = 183/380 (48%), Gaps = 14/380 (3%)

Query: 449 IEVMQLCSIL-EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
            EV +L  +L +  +D +A+ + +G  L ++ ++ ++ GY  E+ L  P T  +      
Sbjct: 107 REVDRLYHLLGDNLTDHVALWSPKGERLYSSPSIERISGYSAEEFLNLPPTAMVSGPDFK 166

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM-HDISEWKQ 566
            + + +  +       +++       K+  ++ L     +L   S   L    DI+E K+
Sbjct: 167 RVQNVIRGLTPGGPPASVDYECF--RKDGSVMWLESSYSRLGDGSGILLVTSRDITERKR 224

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
            +  ++ A ++AE  S+ KSDFLA ++HE+RTPLTAIIGF+EV++        +      
Sbjct: 225 LELDIAKALELAEAASAAKSDFLANMTHELRTPLTAIIGFAEVLRRSGR---LDETAARQ 281

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
           A +I  + N +L +VND+LD S++E+  + L   P       S   +LV+  A  K + +
Sbjct: 282 AGHILDASNTLLSVVNDVLDFSRLEAAGLELDPAPFDPAAMASSCATLVEERAGAKGLAV 341

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT-HTSNEEVILR--VRD 743
               A  I  +  D   + Q+ LN LSNA+ FT  G  I +  +     ++ +LR  V D
Sbjct: 342 VVETAEAIAPMNLDGSRLSQVLLNFLSNAVKFTARGA-ITVRLSQVVEGDQAVLRGEVID 400

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TG+G+     E     F Q   +   R  GTGLGL +++ +++   G+  + S   +G+ 
Sbjct: 401 TGIGIAPENREAIFDRFSQADAAVSRRFGGTGLGLAISRRIIEHMGGRIGVDSVEGEGST 460

Query: 804 IEIIF--PLYDT-SHPHDCI 820
                  P+ D  S P D +
Sbjct: 461 FWFEVRGPVADAPSAPTDIV 480



 Score = 44.6 bits (104), Expect = 0.068,   Method: Composition-based stats.
 Identities = 32/404 (7%), Positives = 92/404 (22%), Gaps = 33/404 (8%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT-L 149
             G     S  + +  G  A + + +    +          ++   L             
Sbjct: 129 PKGERLYSSPSIERISGYSAEEFLNLPPTAMVSGPDFKRVQNVIRGLTPGGPPASVDYEC 188

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
           +  +G+   + ++ +   +   +                          +  +       
Sbjct: 189 FRKDGS--VMWLESSYSRLGDGSGIL-----LVTSRDITERKRLELDIAKALELAEAASA 241

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
            K    +    +              ++               +L      L    +   
Sbjct: 242 AKSDFLANMTHELRTPLTAIIGFAEVLRRSGRLDETAARQAGHILDASNTLLSVVNDVLD 301

Query: 270 PEQEDFHTINLNQYTKKQY------FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
             + +   + L+                ++  +      +      +++    +G  L+ 
Sbjct: 302 FSRLEAAGLELDPAPFDPAAMASSCATLVEERAGAKGLAVVVETAEAIAPMNLDGSRLSQ 361

Query: 324 ETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL-----STLLDAPKLSD 377
             ++       F          +            + I+   G+       + D    +D
Sbjct: 362 VLLNFLSNAVKFTARGAITVRLSQVVEGDQAVLRGEVIDTGIGIAPENREAIFDRFSQAD 421

Query: 378 NNAIKP-----VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ--------F 424
               +      + L  S R       R+       E S     +    A+          
Sbjct: 422 AAVSRRFGGTGLGLAISRRIIEHMGGRIGVDSVEGEGSTFWFEVRGPVADAPSAPTDIVE 481

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468
           P N           D  +N+  +   +     ++E  +DG+A +
Sbjct: 482 PLNAESGVRLLLVEDNAVNRELVRAMLEPFGVVVETANDGVAGV 525


>gi|299146661|ref|ZP_07039729.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
 gi|298517152|gb|EFI41033.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
          Length = 785

 Score =  324 bits (830), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 100/521 (19%), Positives = 198/521 (38%), Gaps = 25/521 (4%)

Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDI 360
            L      +          +    +DK       V   G L YAN  F+         ++
Sbjct: 145 VLIMCRDITERVATQRQLEVFKSVLDKVSDSILAVAEDGTLVYANKQFIEEYGVT--QEL 202

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
                    L     +     + + + R     +A  A        +E    ++     +
Sbjct: 203 GTQKIYD--LRVSMTNKEAWEQKLQVIRDHEGSLAYRAAYIPYGHTKERVHQVSTFLIRE 260

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR--EGIILSTN 478
            NQ            +  D    + ++    + L  IL      + + +   +   L  N
Sbjct: 261 NNQE----LTWFFTQDITDVIKKRDELRELNLLLDGILNNIPVYLFVKDPEDDLRYLYWN 316

Query: 479 RAVSKLFGYPVEDILRKPFTVFLE-QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
           +A +   G P    +                      E+L    R  +++  L +  E +
Sbjct: 317 KAFADHSGIPASKAIGHTDYEIFPVHGDAEKFRKDDLELLQTHKRIDMQETYLSANGEAR 376

Query: 538 LLSLRIIIKKLPFSSCY-SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
           ++     +  +            DI+  +  + +L  A+  AE+    KS FLA +SHEI
Sbjct: 377 IVQTLKALVPMEGRKPLLIGISWDITNLQNIEQELIKARIKAEQSDRLKSAFLANMSHEI 436

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTPL AI+GFS+++               Y+  I+++ +++L ++ND+LD+SKIE+G + 
Sbjct: 437 RTPLNAIVGFSQLL----PSAETAEEKKLYSGIINQNSDILLQLINDILDLSKIEAGTLE 492

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716
               P++L E      ++ +    E  + +          +  D   + Q+  N L+NA 
Sbjct: 493 YIKRPMNLGEVCRTIYTVHKERVKE-GVTLVFDNEEEDLLMEGDQNRIMQVITNFLTNAS 551

Query: 717 HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
            FT  G +I         + + + V+DTG+G+ + +++   + F ++ +      +GTGL
Sbjct: 552 KFTYEG-EIRFGFGRMDKD-IRVYVKDTGIGIESEKVDHIFERFVKLNSF----AQGTGL 605

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
           GL + + +++   G+  + S   KG+      P Y+ +  H
Sbjct: 606 GLSICRMIIEKIGGEIGVTSELGKGSTFYFTIP-YEETGEH 645



 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/170 (11%), Positives = 47/170 (27%), Gaps = 22/170 (12%)

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLC-----------------SILEATSDGIAIINREGI 473
             +  +    +    ++  E+  L                   IL++  D + + N+  +
Sbjct: 8   EALLEQLEALKKENEQLRKELSTLRDEKYNDRPVSFKEKYAVRILDSLPDMLTVFNQSEV 67

Query: 474 -ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
            I   +   +   G   +D         +       ++  +   ++     T        
Sbjct: 68  GIEVVSNEETNHVGISNKDFRGMRMQDMVPPEAYQNIHSNMRHAITTGTVSTAHHEL--- 124

Query: 533 TKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES 582
               +       I  L       +   DI+E    + +L   K + +K S
Sbjct: 125 DFNGERHYYENRIFPL-DEEYVLIMCRDITERVATQRQLEVFKSVLDKVS 173


>gi|194292091|ref|YP_002007998.1| two-component regulatory system protein; signal transduction
           histidine kinase atpase [Cupriavidus taiwanensis LMG
           19424]
 gi|193225995|emb|CAQ71942.1| two-component regulatory system protein; signal transduction
           histidine kinase ATPase [Cupriavidus taiwanensis LMG
           19424]
          Length = 671

 Score =  324 bits (830), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 97/557 (17%), Positives = 197/557 (35%), Gaps = 29/557 (5%)

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
            +  P        +  Q             S+       H          +  ++    T
Sbjct: 2   PACRPTHSMTRRPDDPQLRAGNANSPQGRASEAGSADDRHAADTPYRTLVESVQDYAIFT 61

Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
           +D           G++   N     +  Y+  + +      S       ++       + 
Sbjct: 62  LDV---------GGHVSSWNKGAARIKGYRREEILGK--HFSHFYTPDAVARRWPDAELK 110

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
                            ++ +     A   +     +   + +    +  +  + R    
Sbjct: 111 AAAELGR---FEDEGWRVRKDGSRFWA-NVVITALRDADGKLIGFGKVTRDLTEQRRAAE 166

Query: 446 KMEIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            +      L  ++E   D  I +++  G ++S N   S + GY  ++I+ + F++F  Q 
Sbjct: 167 ALRQSEESLRLLVEGVKDYAIFMLDPGGHVVSWNAGASYIKGYRRDEIIGRHFSLFYPQE 226

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564
             +        +        +E       K+  L    + +  +   S        ++  
Sbjct: 227 DVAAGKPA-RHLDLARRAGRIEDEGWRVRKDGSLFWANVTLTAVYDDSRALRGFAKVTRD 285

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
             E+ +    ++ +++ +    +FLA +SHE+R PL  +      +   R  P       
Sbjct: 286 MSERRRREELERSSQRLN----EFLATLSHELRNPLAPVRSALTAM---RLAPGDGALAN 338

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           +    I+R    +  +V+DLLDI +I SG++ L   PV LDE ++ AI   +   + K  
Sbjct: 339 QSLALIERQVTHLSRLVDDLLDIGRITSGRIELRTGPVELDEILALAIEGARPALDAKSQ 398

Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744
            +    A    R+ AD   + Q+  N++ NA  F+P G  + I+     N  + +RV D 
Sbjct: 399 RVDVQGAPAAIRMDADKTRLVQVMQNLVLNASKFSPPGTVVTIAAAVQ-NRTLEIRVSDQ 457

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTL 803
           G G++ + L+   + F Q          G G+GL L +++V+ + G     S  P  G+ 
Sbjct: 458 GRGISPHALDDIFQLFVQESRPGTDVQGGLGIGLSLCRSLVELHGGTIAATSAGPGLGST 517

Query: 804 IEIIFPL---YDTSHPH 817
             +  PL     +  PH
Sbjct: 518 FTVRLPLPAARRSDDPH 534



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/352 (9%), Positives = 97/352 (27%), Gaps = 30/352 (8%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + +D  G++   ++   +  G    +++G           +       +L         
Sbjct: 59  IFTLDVGGHVSSWNKGAARIKGYRREEILGKHFSHFYTPDAVARRWPDAELKAAAELGRF 118

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +   W +         ++    +   + +  GF    +              ++ ++   
Sbjct: 119 EDEGWRVRKDGSRFWANVVITALRDADGKLIGFGK--VTRDLTEQRRAAEALRQSEESLR 176

Query: 206 HLHEIKKGHS-SVEKEKYDIFSQQSPP----PHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
            L E  K ++  +      + S  +       + R +      + +Y  +D         
Sbjct: 177 LLVEGVKDYAIFMLDPGGHVVSWNAGASYIKGYRRDEIIGRHFSLFYPQEDVAAGKPARH 236

Query: 261 LLTSEESSLPEQEDFH-TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
           L  +  +   E E +    + + +        + ++S+    +       S     +E E
Sbjct: 237 LDLARRAGRIEDEGWRVRKDGSLFWANVTLTAVYDDSRALRGFAKVTRDMSERRRREELE 296

Query: 320 NLTPETVDKC----------------PIPFFVYSHGNLFYANPSFL----LLTKYKSV-D 358
             +    +                   +     + G+   AN S       +T    + D
Sbjct: 297 RSSQRLNEFLATLSHELRNPLAPVRSALTAMRLAPGDGALANQSLALIERQVTHLSRLVD 356

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
           D+   G +++     +       + + L   +    A  A+   +      +
Sbjct: 357 DLLDIGRITSGRIELRTGPVELDEILALAI-EGARPALDAKSQRVDVQGAPA 407



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 37/468 (7%), Positives = 105/468 (22%), Gaps = 28/468 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + +D  G++   +       G    ++IG           +        L   +     
Sbjct: 187 IFMLDPGGHVVSWNAGASYIKGYRRDEIIGRHFSLFYPQEDVAAGKPARHLDLARRAGRI 246

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +   W +         ++    +Y  +R   GF    +            L +   +   
Sbjct: 247 EDEGWRVRKDGSLFWANVTLTAVYDDSRALRGFAK--VTRDMSERRRREELERSSQRLNE 304

Query: 206 HLHEIKKGHS-SVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
            L  +       +   +  + + +  P    + N+  +L E        L  +   +   
Sbjct: 305 FLATLSHELRNPLAPVRSALTAMRLAPGDGALANQSLALIERQVTHLSRLVDDLLDIGRI 364

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
               +  +     ++       +      +   +  +         + A       +   
Sbjct: 365 TSGRIELRTGPVELDEILALAIEGARPALDAKSQRVDVQGAPAAIRMDADKTRLVQVMQN 424

Query: 325 TVDKC----PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIA-GGLSTLLDAPKLSDNN 379
            V       P    V     +   N +  +    +       A   +  L         +
Sbjct: 425 LVLNASKFSPPGTVVTIAAAVQ--NRTLEIRVSDQGRGISPHALDDIFQLFVQESRPGTD 482

Query: 380 AIKPV--------MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
               +         L       IAA+                  +P  + +  P      
Sbjct: 483 VQGGLGIGLSLCRSLVELHGGTIAAT---SAGPGLGSTFTVRLPLPAARRSDDPHGAGPP 539

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI-ILSTNRAVSKLFGYPVE 490
                  D +  +  +  +        +A      ++   G  +         L      
Sbjct: 540 ASGQAAADLQAQRILLVDDNR------DAADSLAMLLEMCGHEVTIAYDGAEALHVASRC 593

Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
                   + +       +   + E+   +  + +     G   + + 
Sbjct: 594 RPHIALIDLAMPGMDGFEVVRAMREVAGTEATRFVALTGFGQPADREH 641


>gi|74313747|ref|YP_312166.1| aerobic respiration control sensor protein ArcB [Shigella sonnei
           Ss046]
 gi|73857224|gb|AAZ89931.1| histidine protein kinase/phosphatase [Shigella sonnei Ss046]
          Length = 778

 Score =  324 bits (830), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 86/438 (19%), Positives = 180/438 (41%), Gaps = 21/438 (4%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L +           L  +Q     +     I   +  +         ++ E
Sbjct: 81  EESRQRLSRLVQKLEEMRERDLSL-NVQLKDNIAQLNQEIAVREKAEAELQETFGQLKIE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             +    + ++E +   L S L+A+ D +   N +      NRA+  L G   + ++   
Sbjct: 140 IKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCY 554
                     + +     ++   ++  T E+        +    +R +    ++      
Sbjct: 200 PVDVYSPEAAAKVIETDEKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGL 259

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+        +   E+ S  K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 260 MGFGRDITERKR-------YQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE 312

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     +Y   I  S   + +I ND++D+ K+E  K+ L  +PV     +++  +L
Sbjct: 313 LTA----EQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENL 368

Query: 675 VQLYANEKRILIRTSFANNIP---RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
             L A +K   +R +    +P   +++ D   ++QI  N++SNA+ FT  G Q+ +   +
Sbjct: 369 SALQAQQKG--LRFNLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQG-QVTVRVRY 425

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMG 790
              + +   V D+G+G+   EL+K    + Q+ +S   +   GTG+GL +++ +     G
Sbjct: 426 DEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGG 485

Query: 791 KFYIFSTPAKGTLIEIIF 808
              + S   KG+   +  
Sbjct: 486 DITVTSEQGKGSTFTLTI 503


>gi|148543263|ref|YP_001270633.1| PAS/PAC sensor signal transduction histidine kinase [Lactobacillus
           reuteri DSM 20016]
 gi|184152674|ref|YP_001841015.1| two-component sensor histidine kinase [Lactobacillus reuteri JCM
           1112]
 gi|194467422|ref|ZP_03073409.1| multi-sensor signal transduction histidine kinase [Lactobacillus
           reuteri 100-23]
 gi|148530297|gb|ABQ82296.1| PAS/PAC sensor signal transduction histidine kinase [Lactobacillus
           reuteri DSM 20016]
 gi|183224018|dbj|BAG24535.1| two-component sensor histidine kinase [Lactobacillus reuteri JCM
           1112]
 gi|194454458|gb|EDX43355.1| multi-sensor signal transduction histidine kinase [Lactobacillus
           reuteri 100-23]
          Length = 621

 Score =  324 bits (830), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 83/426 (19%), Positives = 170/426 (39%), Gaps = 44/426 (10%)

Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI-EVMQLC 455
             R  T++  R       +    K     E     G            ++    E  +L 
Sbjct: 211 EMRKQTLRIARG-----DYSGQVKVLGNDELGQLAGAVNNLSVRVEEAQESSDSERRRLD 265

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYP-VEDILRKPFTVFLEQNTPSVMNHYLT 514
           SIL   SDG+   +R G +   N    +L G    +D++ K     L+      +   + 
Sbjct: 266 SILSHMSDGVLATDRRGNVTIVNNMALQLLGVENEDDLIGKSIIDVLDIRHDYTVRQLVN 325

Query: 515 EILSLDLRQTLEKITLGSTKE-EKLLSLRIIIKKLPFSSCYS----LTMHDISEWKQEKN 569
                      ++  +         L L      +   S +       +HD++  ++E+ 
Sbjct: 326 G---------EQREMIIDMSNSGNNLILNAYFSPIQRESGFVSGLVCVLHDVTSQQKEER 376

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +              +  F++ VSHE+RTPLT++  + E + +  +         ++   
Sbjct: 377 E--------------RKQFVSNVSHELRTPLTSVRSYVEALSDGAWQ--DKEIAPQFLKV 420

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI----- 684
           +    + ++ ++NDLL +S++++G   L+ E V+++E  +  +    +   ++       
Sbjct: 421 VQDETDRMIRMINDLLSLSRMDAGTTKLNLEYVNINELFNYILDRFDMIIKKEEDPKKKK 480

Query: 685 -LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
             I   F      +  D     Q+  NI++NAI ++P GG I       ++  VIL + D
Sbjct: 481 YTIERYFTKKDLWVEIDTDKFTQVIDNIMNNAIKYSPDGGVITTRL-LETHNHVILSISD 539

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
            G+G+   +L +    F ++  ++  +  GTGLGL ++K +++   G+ ++ S   KG+ 
Sbjct: 540 QGLGIPRKDLGRIFDRFFRVDKARSRKQGGTGLGLAISKEVINMLGGQIWVDSVEGKGST 599

Query: 804 IEIIFP 809
             I  P
Sbjct: 600 FYISLP 605


>gi|218517057|ref|ZP_03513897.1| probable two-component sensor histidine kinase protein [Rhizobium
           etli 8C-3]
          Length = 636

 Score =  324 bits (830), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 123/641 (19%), Positives = 240/641 (37%), Gaps = 29/641 (4%)

Query: 181 FGIVHVNRVDNDPRALGK----RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM 236
           F  ++  R +     + +         F  + +     +        +            
Sbjct: 2   FVALNNLRAELAELRIERDRLMTSISAFQTMLDAIDMPAWQRDPAGRLTWVNQAYGDAVE 61

Query: 237 KNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS 296
                            +  E+    T+ ES  P  +   T+     T            
Sbjct: 62  ARSPQQAINEGREMLTTVARERIRATTTPES--PFHDTISTVVHGNRTFFDVVDVTL-PG 118

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYK 355
             +   +   +  ++ A  D       ET+D    P  ++     L + N +F+ L +  
Sbjct: 119 GSAGMAVDVSDIEAVRAELDRTLKSHAETLDHLATPVAIFDGERRLQFYNQAFVALWEL- 177

Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
            +  +E     S LL+  + +     +               A L   +     S  +  
Sbjct: 178 DIAFLEGRPDNSELLERLRAAKKLPDQLNWKSWK-------EAALSVYRALDTQS-DLWH 229

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI----LEATSDGIAIINRE 471
           +P  +  +        G      +    +  +E     L  +    ++  S+G+A+   +
Sbjct: 230 LPNGQTLRVFATAHPQGGATWVFENLTEQVDLETRYNTLVKVQGETIDHLSEGVAVFGPD 289

Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
           G I  +N A   L+G    +         L +      +         +L  + +     
Sbjct: 290 GRIRLSNPAFRALWGITEAEAKPGTHIRALGEACAPSYDRPDGWKTFAELITSFDDERRS 349

Query: 532 STKEEKLLS---LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
                +L S   L   +  LP +    LT  ++++  + +  L+   +   K    K+DF
Sbjct: 350 GQGTLELFSGLVLDYAVIPLPNAQ-TMLTFVNMTDSVRAERALTEKNEALRKADELKNDF 408

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
           +  VS+E+R+PLT IIGF+++++ Q  GPL N R  EY ++I  S +++L +VND+LD++
Sbjct: 409 VQHVSYELRSPLTNIIGFTDLLRTQGVGPL-NERQAEYIDHISTSSSVLLTLVNDILDLA 467

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIA 708
            +++G M L++  + L++ + +    +     E  +++  +    +  I+AD + +KQI 
Sbjct: 468 TVDAGIMRLNYAEIDLNDLLDDVSMQIADRLQESGVVLEITAPAYLGSIVADPQRLKQIL 527

Query: 709 LNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
           L +LSNA +F+P G  I +       + V   VRD G G++   +      F     S +
Sbjct: 528 LKLLSNAANFSPEGSSISLECRREGTDFV-FSVRDRGPGISPDMIATVFDRFATGAKSGK 586

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
               G GLGL +  + V  + G   I S P KGT +    P
Sbjct: 587 R--GGAGLGLSIVDSFVSLHHGDVTIDSEPGKGTTVVCRIP 625



 Score = 54.6 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 38/375 (10%), Positives = 89/375 (23%), Gaps = 16/375 (4%)

Query: 87  WNIDAHGYLKEISEELPKTI-GNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
           W  D  G L  +++     +      + I      ++ +                 + + 
Sbjct: 41  WQRDPAGRLTWVNQAYGDAVEARSPQQAINEGREMLTTV-----ARERIRATTTPESPFH 95

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVH-VNRVDNDPRALGKRLDKKF 204
            T    + G   +  +    LP                V           A         
Sbjct: 96  DTISTVVHGNRTFFDVVDVTLP-GGSAGMAVDVSDIEAVRAELDRTLKSHAETLDHLATP 154

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM--KNKVSSLTEYYAHKDDVLKTEKYPLL 262
             + + ++      +    ++         R      +  L       D +         
Sbjct: 155 VAIFDGERRLQFYNQAFVALWELDIAFLEGRPDNSELLERLRAAKKLPDQLNWKSWKEAA 214

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
            S   +L  Q D   +   Q  +       Q     ++ + +      L   ++    + 
Sbjct: 215 LSVYRALDTQSDLWHLPNGQTLRVFATAHPQG--GATWVFENLTEQVDLETRYNTLVKVQ 272

Query: 323 PETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
            ET+D       V+   G +  +NP+F  L      +     G     L        +  
Sbjct: 273 GETIDHLSEGVAVFGPDGRIRLSNPAFRALWGITEAEA--KPGTHIRALGEACAPSYDRP 330

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
                +    T      R         + L + +      N        N  +    +  
Sbjct: 331 DGWKTFAELITSFDDERRSGQGTLELFSGLVLDYAVIPLPNAQTMLTFVNMTDSVRAERA 390

Query: 442 INKR-KMEIEVMQLC 455
           + ++ +   +  +L 
Sbjct: 391 LTEKNEALRKADELK 405


>gi|150017917|ref|YP_001310171.1| PAS/PAC sensor hybrid histidine kinase [Clostridium beijerinckii
           NCIMB 8052]
 gi|149904382|gb|ABR35215.1| PAS/PAC sensor hybrid histidine kinase [Clostridium beijerinckii
           NCIMB 8052]
          Length = 754

 Score =  324 bits (830), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 103/519 (19%), Positives = 207/519 (39%), Gaps = 55/519 (10%)

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
              F EG +     ++       V   G + Y N   + +  Y   + + +        D
Sbjct: 116 EKLFIEGRDFIDNALESI---LVVSRSGEILYGNKKAIEMYGYSFDELVNLNIFTLRNED 172

Query: 372 APKLSDNNAIKPVML--------YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
           + + + +   K +          ++ D T      R         +             +
Sbjct: 173 SREFTQDQLNKALDRGIKFKSYHHKKDGTRFPVEVRSVCSNKKSRDVAVSIIRDISDMER 232

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
             ++     I  + +D                       D   I ++E  I   ++    
Sbjct: 233 LFKDSKIFSISLDILD-----------------------DPFVIFDKEMNISRWSKGAET 269

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
            FG+   DI+       + ++  +     +  I   ++ +  +  T+   KE  L+++ +
Sbjct: 270 KFGFKEADIIGNDMRRLIPKDKLNESQKLIDMITKGNVIK--DYETVRIDKEGNLVNVLM 327

Query: 544 IIKKLPFSS----CYSLTMHDISEWKQEK-------NKLSHAKKIAEKESSHKSDFLARV 592
               +   +           DI++ K  +        +L   K+ AE+ +  KS FLA +
Sbjct: 328 SASPIYDDNNLFFGVVAMYKDITDRKLIEKDLREKCEQLELLKQKAEEANKAKSIFLANI 387

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHEIRTP+  I    +++K +      N +  +Y   ++ S N VL ++N+LLD+SKIES
Sbjct: 388 SHEIRTPMNGITAAIQLLKLEDI----NEKQKKYIRILNDSANTVLRLINNLLDMSKIES 443

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNI 711
           G   ++ EP +L E ++   + + +  N K + +     +NI   I+ D   +K+I  N+
Sbjct: 444 GTFRINREPFNLKETINNIYNSLLVTGNSKGLEVSYYLDHNIDFEIIGDELRLKEILSNL 503

Query: 712 LSNAIHFTPSG---GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
           +SNA+ FT  G    ++ + +  + +E++   ++D+G+G+ +   +K    F Q   S  
Sbjct: 504 ISNAVKFTDDGYISFRVSMISEDSDSEKIQFTIKDSGIGIDDEFKDKIFNNFTQGNISSM 563

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
            +  GTGLGL ++K   +   G+    S+  KG+     
Sbjct: 564 KKYMGTGLGLSISKQFANLMNGEISFESSFGKGSTFIFT 602


>gi|323699591|ref|ZP_08111503.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           sp. ND132]
 gi|323459523|gb|EGB15388.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           desulfuricans ND132]
          Length = 434

 Score =  323 bits (829), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 88/388 (22%), Positives = 165/388 (42%), Gaps = 30/388 (7%)

Query: 450 EVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
           E+    ++L+  +D I +++ + G IL  + A   L G   + +    F   L  +    
Sbjct: 46  ELEHFRALLDRVNDAIFVVDADSGRILDVSGAADVLLGCDADRLRGLRFADILPPHIRRH 105

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568
            ++           +T     L   K    + L + +          +   DISE K+ +
Sbjct: 106 ADNLFHNETKTVRMETEFSCPLCQGKPPVPVDLTLSLVSFRNERQAIIVARDISERKRNE 165

Query: 569 NKLSHAK-----------KIAEKESSHKSDFLARVSHEIRTPLTAIIGFS---------- 607
             L  +            +  ++ +  KS+FL+ VSHE+RTPLTA++GF+          
Sbjct: 166 RALKRSHDQLELRVRERTRELDRANRAKSEFLSTVSHELRTPLTAVLGFAKVTSRKLVNS 225

Query: 608 -----EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
                E + +                 I   G  +  ++ND+LD++K+E+ ++     PV
Sbjct: 226 IFPAVERLADPNL-RKDMEVVRRNLEIIAGEGQRLTLLINDVLDLAKMEAHRVEYVMAPV 284

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
           S +  + +++ +      +  + +R     ++P +  D   + Q+ +N++SNA+ FTP G
Sbjct: 285 SPEAFIRKSVEVTSALFEDTDLTLRLDLEPDLPLVNGDADRLMQVMVNLISNAVKFTPQG 344

Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
             +I    H  +  V + V DTGVG+    L+   + F Q+      R  GTGLGL + K
Sbjct: 345 --VITCAAHVVDGTVRVGVTDTGVGIRPELLQAIFEEFTQVGEHLSDRPAGTGLGLTICK 402

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            +V+ + G  +  S P  G+      P+
Sbjct: 403 HIVEGHGGHIWAESRPGHGSTFLFTLPV 430


>gi|332524684|ref|ZP_08400883.1| PAS/PAC sensor signal transduction histidine kinase [Rubrivivax
           benzoatilyticus JA2]
 gi|332107992|gb|EGJ09216.1| PAS/PAC sensor signal transduction histidine kinase [Rubrivivax
           benzoatilyticus JA2]
          Length = 856

 Score =  323 bits (829), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 119/667 (17%), Positives = 241/667 (36%), Gaps = 51/667 (7%)

Query: 170 SRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDI---FS 226
             +REF           +R+ +   A+G+  + +   + +              +     
Sbjct: 207 GGSREFRELAEALNDTSSRLRDQMAAIGRA-ESRNEAILQAVPDVILGLDAGGRVCVVNP 265

Query: 227 QQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY--- 283
             S    L+ +  +           D  + E+  L      S         I   +    
Sbjct: 266 GVSSIFGLQPEEALGRPVSDLLPGLDCEEAERRTLAGLYMRSSGTYVARFEIEALRRGGT 325

Query: 284 TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN--- 340
                    +  + +   Y +     +         NL    ++       +        
Sbjct: 326 PFPAEVSLSRTETADGLRYAAVVRDMTEQRMTFSMLNLYSRALECTTNGVVICDMSLPGY 385

Query: 341 -LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399
            +FYANP+F  +T Y + +      G S         D   +  +              R
Sbjct: 386 PVFYANPAFGRITGYAADE----TTGRSCAFLQGDDRDQPQLAELTRAIGRGESTQVVLR 441

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459
            +                    N         G+  +  +    +  +     +L ++ +
Sbjct: 442 NYR---KDGTLFFNELTVSPVPNAEGAPQHYVGVLNDVTERERARMAIAERSERLNAVFD 498

Query: 460 ATSDGIAIIN--REGIILSTNRAVSKLFGYPVEDI-----LRKPFTVFLEQNTPSVMNHY 512
            + DG  + +    G ++  N A   + G+    +     +      FL+Q   S     
Sbjct: 499 LSPDGFVVFDGVDGGRLVYGNPAFFAMTGWDSGVLDAGLGVDDFDRRFLKQCDASTPYSP 558

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572
           ++  L+   R     +      E ++L+ R+  +         L   DI+          
Sbjct: 559 VSLALAAGDRADGPDLLQLVRPERRVLA-RMARRAGAGHHETILFFRDITR--------- 608

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
                  +    KS+FL+  +HE+RTP+ ++ GF+E++  +   P+   R  +    I R
Sbjct: 609 -----ETEVDRMKSEFLSTAAHELRTPMVSVFGFTELLLRR---PVSEERRRDMLQTIHR 660

Query: 633 SGNLVLDIVNDLLDISKIESGK-MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
             +L++++VN+LLD+++IE+ +  +L  EP  LD  V++A+  + +      + I  +  
Sbjct: 661 QASLLINMVNELLDLARIEARQGKDLKREPCRLDSLVTQAVGPMLIQGGAHELQIDVAHP 720

Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST---THTSNEEVILRVRDTGVGM 748
           + +  +  D     +   N+LSNA+ ++P GG I+++T          V +RV D G+GM
Sbjct: 721 DCVLDV--DPEKTNRALTNVLSNAVKYSPDGGTIVVTTQSGELHGEPAVGVRVTDHGIGM 778

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           T+ +L +  + F +   S      GTGLG+ L K +V+   G+  + STP +GT + +  
Sbjct: 779 TSEQLARVFERFYRADPSGN--IPGTGLGMSLVKEIVELQGGRVDVASTPGRGTTVTLWL 836

Query: 809 PLYDTSH 815
           PL   + 
Sbjct: 837 PLSRAAA 843



 Score = 99.3 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 45/431 (10%), Positives = 112/431 (25%), Gaps = 35/431 (8%)

Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH 233
           E    RG  ++ + +      A              +    + V  +   +++   P   
Sbjct: 76  EVVDSRGVQLLSLRQSAEGLVARETPSAAPARGAPAVAGRAARVGDDAVQVWAPVGPGGR 135

Query: 234 LRMKNKVSSLTEYYAHKDDVLKTEKYP-LLTSEESSLPEQEDFHTINLNQYTKKQYFGTL 292
           L       SL         +         L S  + +                 ++   L
Sbjct: 136 LGSFGVTYSLQAERERLGALSYEAVLAIALVSLLTIVVSYGFIQRALAPLQRLVRFSTEL 195

Query: 293 QNNSKESFEYLSHRNHPSLSAYF---------------DEGENLTPETVDKCPIPFF-VY 336
             N+    E           A                    E+     +   P     + 
Sbjct: 196 GRNAGARLEIDGGSREFRELAEALNDTSSRLRDQMAAIGRAESRNEAILQAVPDVILGLD 255

Query: 337 SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA 396
           + G +   NP    +   +  + +     +S LL      +        LY        A
Sbjct: 256 AGGRVCVVNPGVSSIFGLQPEEALGRP--VSDLLPGLDCEEAERRTLAGLYMRSSGTYVA 313

Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
              +  ++                  +  + +    +  +  + R+    +         
Sbjct: 314 RFEIEALRRGGTPF---PAEVSLSRTETADGLRYAAVVRDMTEQRMTFSML----NLYSR 366

Query: 457 ILEATSDGIAIINRE--GI-ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
            LE T++G+ I +    G  +   N A  ++ GY  ++   +        +        L
Sbjct: 367 ALECTTNGVVICDMSLPGYPVFYANPAFGRITGYAADETTGRSCAFLQGDDRDQPQLAEL 426

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKN 569
           T  +        + +     K+  L    + +  +P +      Y   ++D++E ++ + 
Sbjct: 427 TRAIGRGEST--QVVLRNYRKDGTLFFNELTVSPVPNAEGAPQHYVGVLNDVTERERARM 484

Query: 570 KLSHAKKIAEK 580
            ++   +    
Sbjct: 485 AIAERSERLNA 495



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 45/386 (11%), Positives = 98/386 (25%), Gaps = 28/386 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL---LKRQNTW-- 143
           +DA G +  ++  +    G    + +G  + D+   L  +           ++   T+  
Sbjct: 254 LDAGGRVCVVNPGVSSIFGLQPEEALGRPVSDLLPGLDCEEAERRTLAGLYMRSSGTYVA 313

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN-DPRALGKRLDK 202
             +       GT     + L+      R     G R   +V            L      
Sbjct: 314 RFEIEALRRGGTPFPAEVSLS------RTETADGLRYAAVVRDMTEQRMTFSMLNLYSRA 367

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
                + +     S+        +           ++ +  +  +   DD  + +   L 
Sbjct: 368 LECTTNGVVICDMSLPGYPVFYANPAFGRITGYAADETTGRSCAFLQGDDRDQPQLAELT 427

Query: 263 TSEESSLPEQEDFH--TINLNQYTKKQYFGTLQNNSKESFEYLS----HRNHPSLSAYFD 316
            +       Q        +   +  +     + N       Y+                 
Sbjct: 428 RAIGRGESTQVVLRNYRKDGTLFFNELTVSPVPNAEGAPQHYVGVLNDVTERERARMAIA 487

Query: 317 EGENLTPETVDKCPIPFFVY---SHGNLFYANPSFLLLTKYKS--VDDIEIAGGLSTLLD 371
           E         D  P  F V+     G L Y NP+F  +T + S  +D             
Sbjct: 488 ERSERLNAVFDLSPDGFVVFDGVDGGRLVYGNPAFFAMTGWDSGVLDAGLGVDDFDRRFL 547

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
             +   +    PV L  +          L  ++  R     +  +         E +   
Sbjct: 548 K-QCDASTPYSPVSLALAAGDRADGPDLLQLVRPERR---VLARMARRAGAGHHETILFF 603

Query: 432 GIEPEDVDTRINKRK-MEIEVMQLCS 456
                + +    K + +     +L +
Sbjct: 604 RDITRETEVDRMKSEFLSTAAHELRT 629


>gi|16801705|ref|NP_471973.1| two-component sensor histidine kinase [Listeria innocua Clip11262]
 gi|16415180|emb|CAC97870.1| two-component sensor histidine kinase [Listeria innocua Clip11262]
          Length = 591

 Score =  323 bits (829), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 86/369 (23%), Positives = 175/369 (47%), Gaps = 31/369 (8%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           +++    +L +I++    G+ +IN +  ++ TNR + ++ G    +I  KPF   ++   
Sbjct: 246 EIKQNEQRLNAIVQNLVSGVMLINVDKQVIMTNRTMYQILG--ETEITGKPFYEVIKSFA 303

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISE 563
            S +        + + +   +K  +     E +L   +              L +HDI++
Sbjct: 304 LSQLIDA-----TFETKTMQQKEIILYFPREMILDASVSPILAENGEITGIILLLHDITQ 358

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            +  +N               +S+F+  VSHE++TP+TA+ GF+E + +   G + +   
Sbjct: 359 IRHLENV--------------RSEFVTNVSHELKTPVTALKGFAETLLD---GAMYDEML 401

Query: 624 -IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             ++   I    + +  ++ D+L +S+IE   +  + EPV +DE + ++   +   A EK
Sbjct: 402 LKKFLTIIKEESDRLHRLIMDILALSRIEQNPVAENTEPVDVDEVIEQSSRTIFEMATEK 461

Query: 683 RILIRTSFANNIPRILA--DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
            I +       IP I+   D   ++QI +N+LSNAI++TP  G++ +        EVI+ 
Sbjct: 462 NIQVSV-PEKTIPPIIIETDRDKLQQILINLLSNAINYTPVDGKVEVKL-INQEAEVIIE 519

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V D G+G+   ++++  + F ++  ++     GTGLGL + K +V+   G+  + S    
Sbjct: 520 VTDNGIGIPAKDIDRVFERFYRVDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEV 579

Query: 801 GTLIEIIFP 809
           G+   +  P
Sbjct: 580 GSTFRVTLP 588


>gi|262274945|ref|ZP_06052756.1| aerobic respiration control sensor protein ArcB [Grimontia hollisae
           CIP 101886]
 gi|262221508|gb|EEY72822.1| aerobic respiration control sensor protein ArcB [Grimontia hollisae
           CIP 101886]
          Length = 782

 Score =  323 bits (829), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 90/445 (20%), Positives = 177/445 (39%), Gaps = 20/445 (4%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L        A    L+       N L +      K  +         +E E
Sbjct: 81  EESRQRLTKLVVKLEEMRARDMELNRQLTENINQLNLEIE-ERKRAEEAREEAMVDLENE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
                  + ++  +   L S ++A+ D I   N +G     NRA+  L G   ++++   
Sbjct: 140 VYQREKAQVELAEQTALLRSFIDASPDLIYYRNEKGQFSGCNRAMEDLTGKKEKELVGLT 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CY 554
                 ++  S +     ++   ++  T E+        +    LR +            
Sbjct: 200 PWDVYREDIASKVVETDQQVFDNNVSLTYEQWLEYQDGRKAYFELRKLPFYSRDGRRLGL 259

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                +I+E K+        +   EK S  K+ F++ +SHE+RTPL  I+G S ++   R
Sbjct: 260 VGFGREITERKR-------YQDALEKASRDKTAFISTISHELRTPLNGIVGLSRMLLETR 312

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                +   + +   I  S   + +I ND++D+ K +  ++ L  +PV L + VSE  S+
Sbjct: 313 L----SEEQLGHLRTIHVSAITLGNIFNDIIDLDKSDRRRLELMPQPVDLPDFVSEIESI 368

Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHT 732
             L A +K +        ++P  +  D   ++QI  N++ NA+ FT  G   + +S    
Sbjct: 369 SALMAQQKGLRFTLDRLTDLPPAVKVDATRLRQILWNLVGNAVKFTKQGAVNVTVSCDVE 428

Query: 733 SN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNS-QQIRGEGTGLGLPLAKAMVDANMG 790
            +   +   V D+G+G+   E +K    + Q+      +   GTG+GL +++ +     G
Sbjct: 429 EDTAHLQFEVEDSGIGIPLEEQDKIFAMYYQVKQGEDNLHAVGTGIGLAVSRKLARLMNG 488

Query: 791 KFYIFSTPAKGTLIEIIF--PLYDT 813
              + S   +G+   +    PL + 
Sbjct: 489 DITVDSEVGEGSTFTVTLAVPLCEA 513



 Score = 47.3 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/126 (14%), Positives = 35/126 (27%), Gaps = 5/126 (3%)

Query: 93  GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTWYGKTTLWP 151
           G     +  +    G    +++G+   DV               +     +   +  L  
Sbjct: 175 GQFSGCNRAMEDLTGKKEKELVGLTPWDVYREDIASKVVETDQQVFDNNVSLTYEQWLEY 234

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
            +G   Y   +L  LP YSR+    G  GFG           +   ++  +  +      
Sbjct: 235 QDGRKAYF--ELRKLPFYSRDGRRLGLVGFG--REITERKRYQDALEKASRDKTAFISTI 290

Query: 212 KGHSSV 217
                 
Sbjct: 291 SHELRT 296


>gi|300709685|ref|YP_003735499.1| sensory transduction histidine kinase [Halalkalicoccus jeotgali B3]
 gi|299123368|gb|ADJ13707.1| sensory transduction histidine kinase [Halalkalicoccus jeotgali B3]
          Length = 860

 Score =  323 bits (829), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 114/795 (14%), Positives = 265/795 (33%), Gaps = 57/795 (7%)

Query: 44  PCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELP 103
           P     +  +  D  + + S+    DS        + R+      ID  G  + +S+ L 
Sbjct: 94  PTIVRADDDSLVDAVRSTRSSAENSDSPPEVAMSLLDRSADRIARIDGDGTYRSVSDGLA 153

Query: 104 KTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDL 163
             + + A  ++G  + + S    IDP   I      Q           ++  + YV +  
Sbjct: 154 AALDSSAAALVGTTIAETSM---IDPEVLIE---HGQRALQTGAIQRYVDEDHQYVFV-- 205

Query: 164 AALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYD 223
              PI     +        +V   R +     +        + L  +       + E   
Sbjct: 206 ---PIGDDQFQL-------VVQDPRSETVSERVELSNGFIDTVLDRLSDIFFVFDFEGTF 255

Query: 224 IFSQQSPPPHLRMK-NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQ 282
           +              ++++S++          +     +    E+              +
Sbjct: 256 LHWNDRLTEVTGYSNDEIASMSPMDFFVQADYERVDAAMSEIVETGDATAVVRIRTRGGR 315

Query: 283 YTKKQYFGTLQNNSKESFEYL-----SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS 337
               ++ G++      S +Y+                  E +      +   P   + Y 
Sbjct: 316 LLPYEFTGSMVAREDGSPQYICGIARDISQRRRSERALRERQQALSNLIKNLPGVVYRYR 375

Query: 338 HGN---LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394
           +     + + +     LT Y            +  +  P+  +            D    
Sbjct: 376 NETGFPVEFMSEGCTALTGYSRERLESGEVSWTDDVIHPEDREELRADVQTALAEDEQYQ 435

Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
                 + I+        +        +        +G   E  D    + ++  E    
Sbjct: 436 ----TTYRIRTADGEIRWVREQGSGVDDPDGSVEYLDGYLTEVTDVVEIEEELRREKAFT 491

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
            S L+A  D   + +  G +L  N   +++ GY   +I     T F+       + + + 
Sbjct: 492 ESALDAQPDLFYVFSPTGEMLRWNDRFNEVTGYSDAEIESMQPTDFVASEDVPNVRNAIG 551

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-----------CYSLTMHDISE 563
            + +     ++E   +  T++++ +        +                   T  +IS+
Sbjct: 552 RVATDHETGSIEATLV--TEDDRHIPYEFTGSVIEDVGESVYDTREHDLYLCGTGRNISQ 609

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
               + +L  A +  E+ ++    F    SH+++ PL  I  + ++I+ +  G L +   
Sbjct: 610 RITAEQELEAAIEELERSNAELERFAYVASHDLKEPLRMIRSYLDLIQRRYEGSL-DEDA 668

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            E+  Y       +  +++DLL  S+I  G  ++  + V  +E +   +  +++   E+ 
Sbjct: 669 DEFITYAVDGAERMRRMIDDLLTYSRI--GTDDITLQAVDPNEVIDRVLDSIRIAIEEEN 726

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT-PSGGQIIISTTHTSNEEVILRVR 742
             +      ++P +  D + + Q+  N++SNAI ++  +  +I +S T   +      V 
Sbjct: 727 ADVTVE---DLPTVEGDAQQLGQLFQNLISNAIAYSGEAPPEIHVSATEYDDGW-QFSVS 782

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D+GVG+   ++++  + F     S         +GL + K +V  + G+ ++ S P  G+
Sbjct: 783 DSGVGIDPDQIDEVFEIFSSGTVSSSTG-----IGLAICKKIVQQHGGEIWVESEPGTGS 837

Query: 803 LIEIIFPLYDTSHPH 817
                    DT+ P+
Sbjct: 838 TFHFTISDTDTTDPN 852


>gi|254881605|ref|ZP_05254315.1| two-component system sensor histidine kinase [Bacteroides sp.
           4_3_47FAA]
 gi|319642990|ref|ZP_07997624.1| sensor protein [Bacteroides sp. 3_1_40A]
 gi|254834398|gb|EET14707.1| two-component system sensor histidine kinase [Bacteroides sp.
           4_3_47FAA]
 gi|317385355|gb|EFV66300.1| sensor protein [Bacteroides sp. 3_1_40A]
          Length = 781

 Score =  323 bits (829), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 102/513 (19%), Positives = 201/513 (39%), Gaps = 24/513 (4%)

Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDI 360
            L      S      +   +    +DK       V + G L YAN  F+     K     
Sbjct: 142 VLIMCRDISERVATQQNLEIFKRVLDKVSDSILAVSADGTLVYANRQFIEEYGVKEELGT 201

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
           +    LS  L+  ++ D    +     R +    A  A+   +    E  L +  +    
Sbjct: 202 QKVYDLSVSLNTKEIFDKRVQEI----RDNGGNFAYRAKYTRV---GETKLRVHQVSAFM 254

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR--EGIILSTN 478
                E M       +  D   N+ ++      + +IL      + + +   +   L  N
Sbjct: 255 IQNQGEEMIWFFT-QDITDVIKNRDELRELNYLMDAILNNIPVYLFVKDPEDDFRYLYWN 313

Query: 479 RAVSKLFGYPVEDILRKPFTVFLE-QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
           +A +     P    L                 +    E++    R  +++  + +T E +
Sbjct: 314 KAFASHSKIPASKALGHTDFEVFPEHENAEKFHRDDLELIRTRERMEMQETYVTATGETR 373

Query: 538 LLSLRIIIKKLPFSSC-YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
           ++     +  L   +        DI+  +  + +L  A+  AE+    K+ FLA +SHEI
Sbjct: 374 IVQTLKTLVPLEGRAPLIIGISWDITNMQNIEQELVQARIKAEQSDRLKTAFLANMSHEI 433

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTPL AI+GFS ++         + +   Y++ I+++  ++L ++ND+LD++KIE+G + 
Sbjct: 434 RTPLNAIVGFSRLM--TIADNAEDEKL--YSDIINQNSEILLQLINDILDLAKIEAGTLE 489

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716
               P+ L E       + +       +++     +    I  D   + Q+  N+++NAI
Sbjct: 490 YIRYPMDLGELCRNVYEMHKDRVQT-GVVLILDNKDTSLIINEDQNRIMQVVTNLITNAI 548

Query: 717 HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
            FT  G +I           +   V+DTG+G++  +++   + F ++        +GTGL
Sbjct: 549 KFTFKG-EIRFGFEVREE-YIDFYVKDTGMGISEEKIKMIFERFVKLNTF----VQGTGL 602

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GL + + +V+   G+    S   +G+      P
Sbjct: 603 GLAICRVIVEKLGGEITAESKLNEGSTFRFTIP 635



 Score = 46.9 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 41/127 (32%), Gaps = 5/127 (3%)

Query: 457 ILEATSDGIAIINREGI-ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           IL++  D + + N E   I   +   +   G   E          + +     +++ L +
Sbjct: 48  ILDSLPDMLTVFNHEETGIEVVSNEETNHVGVSNETFKGMSMREMVPKEAYHNIHNNLLK 107

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575
           +++     T            +       I  L       +   DISE    +  L   K
Sbjct: 108 VITTGRGSTAHHEL---DVNGEHHYYENRIFPL-DDEYVLIMCRDISERVATQQNLEIFK 163

Query: 576 KIAEKES 582
           ++ +K S
Sbjct: 164 RVLDKVS 170


>gi|212639747|ref|YP_002316267.1| Hybrid signal transduction histidine kinase [Anoxybacillus
           flavithermus WK1]
 gi|212561227|gb|ACJ34282.1| Hybrid signal transduction histidine kinase [Anoxybacillus
           flavithermus WK1]
          Length = 962

 Score =  323 bits (829), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 99/573 (17%), Positives = 194/573 (33%), Gaps = 42/573 (7%)

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
           EES +   E+          ++          +   + L   N                 
Sbjct: 267 EESLMAHNEELLAQQDELEIQQAELEQALEAMQAREKELKRYNDFIQGLSNSLDRQEVLN 326

Query: 325 TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
            +            G +   N           +    +   L+ + +          KP 
Sbjct: 327 NIVHNIARVMEADRGMIVLMN--AEKTHASFGLSASGVEQFLTYIYNGLHQRLFEQKKPF 384

Query: 385 MLYRS---------DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
           ML R          + T       L  +    +    + F  F       +     G+  
Sbjct: 385 MLKRELTASEKGYHEETMFVHDVFLPVLSNENDVQAILVFSRFGGPFSDEDMQEYVGLTK 444

Query: 436 EDVDTRINKR---KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV-ED 491
           +   +        + E     +  IL    +GI  ++ +G  +  N+ +  L       +
Sbjct: 445 QISISLQKIALYEQSEQARETVQHILNTVQEGIHFVDSKGHSVMVNKQMVALLQKETIAE 504

Query: 492 ILRKPFTVFLEQ-----NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII- 545
           +    +  +        +    +  YL  I+          +     K  K++ +     
Sbjct: 505 LEGASYEQWARGLVEQSDAGKKLCDYLRAIIFNGDEDVEPFVYHLPQK-RKVIQVYAKPL 563

Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
            +            DI++                +    KS+F++ VSHE+RTPL++++G
Sbjct: 564 YRNGERQGTVFVHRDITKQ--------------FEVDQMKSEFVSTVSHELRTPLSSVLG 609

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
           F+E++  +   P    R  +Y   I +    +  ++ND LD+ ++ESGK     +   + 
Sbjct: 610 FTELMLTKELKP---ERQKKYLTTIYQEAKRLTALINDFLDVQRMESGKQTYDKKYEDIV 666

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725
             +   I       N K          N   +L D   + Q+  N++SNAI ++P GG I
Sbjct: 667 SIIENVIET--QKVNTKIHQFHVQKETNNTTVLGDRDKLAQVFTNLISNAIKYSPEGGNI 724

Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
            +   +     + + V+D G+G+    +      F ++ NS + R  GTGLGL + K +V
Sbjct: 725 TVRI-YERGTRLCVDVQDEGLGIPEEAIPNLFTKFYRVDNSDRRRIGGTGLGLAIVKEIV 783

Query: 786 DANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
            A+ G+  + S   KG+   +  PL   +   +
Sbjct: 784 KAHEGEVSVTSELKKGSTFTVSLPLVVLASEEE 816


>gi|149181690|ref|ZP_01860183.1| two-component sensor histidine kinase [Bacillus sp. SG-1]
 gi|148850668|gb|EDL64825.1| two-component sensor histidine kinase [Bacillus sp. SG-1]
          Length = 590

 Score =  323 bits (829), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 87/367 (23%), Positives = 159/367 (43%), Gaps = 29/367 (7%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            +  E  QL SIL + +DG+   NR+G IL TN    +       +          ++  
Sbjct: 249 ALSQEKEQLSSILSSMADGVITFNRDGTILITNPPAERFLQQWYYEQEGNE-----QEAI 303

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
           P+ +   L +++ L+  QT E    G       + +   +    +       + D++E +
Sbjct: 304 PTTLKELLEQVILLENEQTGEVSLQGR----SYVVIVSPLYNEEYVRGAVAVVRDMTEER 359

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           +                  + DF+A VSHE+RTP+  + G+SE I +            E
Sbjct: 360 RL--------------DKLRKDFIANVSHELRTPIAMLQGYSEAIIDDI--AESEEEKKE 403

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
            A  I      +  +VNDLLD++++E+G + L  E   +   +    +  Q  A EK I 
Sbjct: 404 IAKIIYDESLRMGRLVNDLLDLARMEAGHITLKKEKSDISTFLERVTNKFQGIAKEKNIG 463

Query: 686 IRTSFAN---NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           +         N  +I  D   ++Q+  N++ NA+  TP  G + ++   T +  +++ V 
Sbjct: 464 LNFIGHKTGLNSQQIYIDPDRIEQVLTNLIDNALRHTPETGSVSVNYKPTKSG-ILVEVS 522

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D+G G+   +L    + F +   ++     GTGLGL +AK ++D++ G+  + S   +GT
Sbjct: 523 DSGSGIPEEDLPFVFERFYKADKARTRGKSGTGLGLAIAKNIIDSHNGQISVHSKVDQGT 582

Query: 803 LIEIIFP 809
                 P
Sbjct: 583 TFSFFLP 589


>gi|187930424|ref|YP_001900911.1| multi-sensor hybrid histidine kinase [Ralstonia pickettii 12J]
 gi|187727314|gb|ACD28479.1| multi-sensor hybrid histidine kinase [Ralstonia pickettii 12J]
          Length = 1436

 Score =  323 bits (829), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 97/518 (18%), Positives = 192/518 (37%), Gaps = 28/518 (5%)

Query: 307  NHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGG 365
                      +  +     ++  P P             N +F  +        +     
Sbjct: 551  QRRRAEETLAQQLSFQRALMEAVPFPLVAKDAAQRYVAVNAAFCNMFGQPRASLLGRTPQ 610

Query: 366  LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
               L      S  + I       S+ T          I      S  + +          
Sbjct: 611  ELGLYSVSNTSPLSDINQRAAQISESTR-----EELIIDTPDGQSRNVLYWIEPFHLPDG 665

Query: 426  ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR-----EGIILSTNRA 480
            +         +  + R  + + E    +L  + E+    +          +G I      
Sbjct: 666  QPAGTVASLVDISEIREAQARAERLEQRLREVTESLPALVYQFELPPGQVQGRITYVAGK 725

Query: 481  VSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
              +  G   +D+L       + + ++    M   +  ++S      L++     + +  +
Sbjct: 726  AYETLGVQPQDLLDYLSTPELLIHEDDRQRMLDTV--LVSAQQLTPLDQQFRHVSADGVV 783

Query: 539  LSLRIIIKKLPFSSCYSL---TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
              L         +   ++    + D++  +++ + L  AK  AE     K  FLA +SHE
Sbjct: 784  RWLHARSIPHREADGRTVWNGYLSDVTAEREQADALEAAKNAAESALHAKDRFLAMMSHE 843

Query: 596  IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
            IRTP+  ++G  E+++  +          +  + +  SG  +L I++D+LD +KIE+G++
Sbjct: 844  IRTPMNGVLGLVELLQQTKL----EGEQKQMVSLVQDSGRALLHILDDILDYAKIEAGRL 899

Query: 656  NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSN 714
            ++      L E     + L+   A+EK + +  + A ++P  +  D   ++QI  N+LSN
Sbjct: 900  DISPAATDLREVFDGTVGLLASRAHEKSLAVHVTVAADVPASVSVDSIRLRQILFNLLSN 959

Query: 715  AIHFTPSGGQIIISTTH----TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
            AI FT +G  + +S            +I+ V DTG+G++         PF Q   S   R
Sbjct: 960  AIKFTDTGS-VRLSAECARVTDDTAHLIISVTDTGIGISPAVQATLFAPFVQAERSTTRR 1018

Query: 771  GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
              GTGLGL +++ +     GK  + S   +GT + +  
Sbjct: 1019 YGGTGLGLAISRQLAGLMGGKLVMESAQGQGTAVTLEL 1056



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/406 (8%), Positives = 109/406 (26%), Gaps = 25/406 (6%)

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
           L   F            ++ E+  +                  L                
Sbjct: 311 LLGIFPEYQNFLSRTLGLQFERVPVRDWADALDKAGNGEVDILLGMSDQDARPAGFALTQ 370

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
           P+  +    +   +      L++ + K       +           +     +   D   
Sbjct: 371 PIDATPLVIVGRNDALTVAALSELSGKTVALPASDTLTAILRQNVPKIRLVSAGSVDNAL 430

Query: 320 NLTPE-----TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
           ++        T+   P+   +     + +  P  L +T   +  +    G  +       
Sbjct: 431 SMVASGKADFTIVNLPVADAL-----IRHHFPGELKVTGSANTVESIGVGVSARY----- 480

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF------IPFEKANQFPENM 428
            +    I   +    +   ++   +  ++ +    S +              A      +
Sbjct: 481 AALVPLINRALFAMPEGEQVSIRNKWLSVSYQLGPSASAVLGKFGPVAALVLAALVALFI 540

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
            Q  +  E+   R  +  +  ++    +++EA    +   +     ++ N A   +FG P
Sbjct: 541 KQMQLRRENHQRRRAEETLAQQLSFQRALMEAVPFPLVAKDAAQRYVAVNAAFCNMFGQP 600

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK----LLSLRII 544
              +L +        +  +          +  + ++  +  +  T + +    L  +   
Sbjct: 601 RASLLGRTPQELGLYSVSNTSPLSDINQRAAQISESTREELIIDTPDGQSRNVLYWIEPF 660

Query: 545 IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
                  +    ++ DISE ++ + +    ++   + +      + 
Sbjct: 661 HLPDGQPAGTVASLVDISEIREAQARAERLEQRLREVTESLPALVY 706



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/301 (9%), Positives = 80/301 (26%), Gaps = 21/301 (6%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS--DILHIDPNNHIGDLLKRQNTWYGKT 147
           DA      ++       G     ++G    ++    + +  P + I     + +    + 
Sbjct: 581 DAAQRYVAVNAAFCNMFGQPRASLLGRTPQELGLYSVSNTSPLSDINQRAAQISESTREE 640

Query: 148 TLWPI-EGTNLYV--PIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP-RALGKRLDKK 203
            +    +G +  V   I+   LP        +       +   +   +      + + + 
Sbjct: 641 LIIDTPDGQSRNVLYWIEPFHLPDGQPAGTVASLVDISEIREAQARAERLEQRLREVTES 700

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL---TEYYAHKDDVLKTEKYP 260
              L    +      + +    + ++          +       E   H+DD  +     
Sbjct: 701 LPALVYQFELPPGQVQGRITYVAGKAYETLGVQPQDLLDYLSTPELLIHEDDRQRMLDTV 760

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
           L+++++ +  +Q+  H                   +     +  + +  +      +   
Sbjct: 761 LVSAQQLTPLDQQFRHVSADGVVRWLHARSIPHREADGRTVWNGYLSDVTAEREQADALE 820

Query: 321 LTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
                 +               +A   FL +  ++    +    GL  LL   KL     
Sbjct: 821 AAKNAAESA------------LHAKDRFLAMMSHEIRTPMNGVLGLVELLQQTKLEGEQK 868

Query: 381 I 381
            
Sbjct: 869 Q 869


>gi|77745279|gb|ABB02540.1| signal transduction histidine kinase [Lactobacillus reuteri]
          Length = 621

 Score =  323 bits (829), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 83/426 (19%), Positives = 170/426 (39%), Gaps = 44/426 (10%)

Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI-EVMQLC 455
             R  T++  R       +    K     E     G            ++    E  +L 
Sbjct: 211 EMRKQTLRIARG-----DYSGQVKVLGNDELGQLAGAVNNLSVRVEEAQESSDSERRRLD 265

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYP-VEDILRKPFTVFLEQNTPSVMNHYLT 514
           SIL   SDG+   +R G +   N    +L G    +D++ K     L+      +   + 
Sbjct: 266 SILSHMSDGVLATDRRGNVTIVNNMALQLLGVENEDDLIGKSIIDVLDIRHDYTVRQLVN 325

Query: 515 EILSLDLRQTLEKITLGSTKE-EKLLSLRIIIKKLPFSSCYS----LTMHDISEWKQEKN 569
                      ++  +         L L      +   S +       +HD++  ++E+ 
Sbjct: 326 G---------EQREMIIDMSNSGNNLILNAYFSPIQRESGFVSGLVCVLHDVTSQQKEER 376

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +              +  F++ VSHE+RTPLT++  + E + +  +         ++   
Sbjct: 377 E--------------RKQFVSNVSHELRTPLTSVRSYVEALSDGAWQ--DKEIAPKFLKV 420

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI----- 684
           +    + ++ ++NDLL +S++++G   L+ E V+++E  +  +    +   ++       
Sbjct: 421 VQDETDRMIRMINDLLSLSRMDAGTTKLNLEYVNINELFNYILDRFDMIIKKEEDPKKKK 480

Query: 685 -LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
             I   F      +  D     Q+  NI++NAI ++P GG I       ++  VIL + D
Sbjct: 481 YTIERYFTKKDLWVEIDTDKFTQVIDNIMNNAIKYSPDGGVITTRL-LETHNHVILSISD 539

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
            G+G+   +L +    F ++  ++  +  GTGLGL ++K +++   G+ ++ S   KG+ 
Sbjct: 540 QGLGIPRKDLGRIFDRFFRVDKARSRKQGGTGLGLAISKEVINMLGGQIWVDSVEGKGST 599

Query: 804 IEIIFP 809
             I  P
Sbjct: 600 FYISLP 605


>gi|229136290|ref|ZP_04265037.1| hypothetical protein bcere0014_51590 [Bacillus cereus BDRD-ST196]
 gi|228647162|gb|EEL03250.1| hypothetical protein bcere0014_51590 [Bacillus cereus BDRD-ST196]
          Length = 586

 Score =  323 bits (829), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 84/376 (22%), Positives = 161/376 (42%), Gaps = 25/376 (6%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +  +   E E  +L S+L   +DG+   +R+G I+  N    K+     E  L +     
Sbjct: 231 QQARSSTESERRKLSSVLSHMTDGVIATDRKGDIILLNDPAEKMLNVSRETALDQSVLEV 290

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
           L       ++H   E  S+ L  +                  +I K+   ++     ++D
Sbjct: 291 LGIQEEFTLDHLYEEPDSVLLDFSTRNEPYILRAS-----FSVIQKETGKANGLIAVLYD 345

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           ++E ++ + +              + +F+A VSHE+RTPLT +  + E + +  +     
Sbjct: 346 VTEQERIEQE--------------RREFVANVSHELRTPLTTMRSYLEALTDGAWQDPNI 391

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
                +          ++ +VN LL +SK++S +  L  E V   +  +  I   +  + 
Sbjct: 392 APQ--FLTVTQEETERMIRLVNALLQLSKLDSTEHRLMKEWVDFTDFFNNVIDRFE-MSK 448

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV-IL 739
           E+ +  + SF+     I  D   + Q+  NI+SNA+ ++P GG +          E+  +
Sbjct: 449 EQNVSFKRSFSKKSRFIDMDTDKITQVLYNIISNALKYSPEGGTVT--YRLRDRGELLEI 506

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V D G+G+    ++K  + F ++  ++  +  GTGLGL +AK M++A+ G  +  S   
Sbjct: 507 SVSDQGMGIPKENVDKIFERFYRVDKARSRQMGGTGLGLAIAKEMIEAHGGSVWAKSEEG 566

Query: 800 KGTLIEIIFPLYDTSH 815
           KGT I    P+     
Sbjct: 567 KGTTIYFTLPMATDEE 582


>gi|154250574|ref|YP_001411398.1| PAS/PAC sensor signal transduction histidine kinase [Parvibaculum
           lavamentivorans DS-1]
 gi|154154524|gb|ABS61741.1| PAS/PAC sensor signal transduction histidine kinase [Parvibaculum
           lavamentivorans DS-1]
          Length = 861

 Score =  323 bits (829), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 127/710 (17%), Positives = 241/710 (33%), Gaps = 46/710 (6%)

Query: 118 LCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSG 177
              +   L  +    +   ++R  T  G      ++ T+            +      +G
Sbjct: 160 FSYLLTRLEPENAGRLNTAVQRLRT-RGARFSLHVQSTDGRT---------FEAEGRPAG 209

Query: 178 FRGFGIVHVNRVDNDPR-ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM 236
                 +     +      L +RL +        ++   S     +      +       
Sbjct: 210 ALAVLWLRDVTGERAEVSRLKERLRQAEFARARFEEHIGSAPFPAWRRGDDGALVWVNAA 269

Query: 237 KNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS 296
             +              L+      L+S    L ++      +      ++    +    
Sbjct: 270 YARAVDAASPEDAVTRGLELLNEETLSSLRRGLFDRSRARARSHAIMAGERRALDIVEQR 329

Query: 297 ---KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLT 352
                S   +   +  +  A           T+D+      +      L + N +F  L 
Sbjct: 330 LGDGVSGIAIDVSDLDAAEAELRRHIESHAATLDRVTTAVAICGPDKRLTFRNRAFETLW 389

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT---IQWNREN 409
                        L         SD   +  +   R         A   T   I  + + 
Sbjct: 390 G------------LDPHWLDGGPSDGEILDELRARRRLPEQANFQAWKQTRMEIYRSTDP 437

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL----CSILEATSDGI 465
                 +P  +  +        G      +    +  +E     L       ++   +G+
Sbjct: 438 VDEYWHLPDGRTIKLLAQAHPFGGVIYLYENVTERLNLESSYNTLARVQRETIDHLYEGV 497

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT-EILSLDLR-- 522
           A+   +G +   N A + ++    E +  +P    L +    ++      + L   +   
Sbjct: 498 AVFGSDGRLKLYNPAYANIWNLADEQLSGEPHVNELVEMCRPLLADEAEWDTLKNGVTNM 557

Query: 523 QTLEKITLGS--TKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
             +     G     +  ++    +           +T  D+++  + +  L       E 
Sbjct: 558 SGIRTQITGRLDRPDGTVVDYAQVPLP---DGATLMTYVDVTDSTRMEQALRDRNDALET 614

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
               KS+F++ VS+++RTPLT I+GF E+++ + FGPL  PR  EY   I  S   ++D+
Sbjct: 615 ADRLKSEFISHVSYQLRTPLTNILGFGEILETEMFGPLS-PRQHEYMQGILESSETLIDV 673

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILAD 700
           VND+LD++ IE+G M L    V L E +       Q  A + ++ +R     +I  + AD
Sbjct: 674 VNDILDLAVIEAGAMTLDLSDVELSEVIYATEEFAQRPAQKNKVTLRVECPKDIGIVRAD 733

Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760
            + +KQI +N+LSN++ FT  G  I+I      N  V L V DTG G+           F
Sbjct: 734 EKRIKQIMINLLSNSLAFTSPGDTIVIGAARRDN-SVELYVEDTGDGIKPEFQSNVFDRF 792

Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
               +S   R  G GLGL L ++ V+ + G   + S P  GT +    P+
Sbjct: 793 E-AHSSSDRR-RGAGLGLSLVRSFVELHGGWVTLESAPDVGTRVTCHLPV 840



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 49/404 (12%), Positives = 98/404 (24%), Gaps = 31/404 (7%)

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS--LT 244
            R+D     L    D  F    E  +      + +  I    +        +   S  LT
Sbjct: 106 ARLDAAEAILAAEPDAVFIWTPETLRAAPGTFQARPRIVGSTATLVDPSSGDLDFSYLLT 165

Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
                    L T    L T         +           +      +      + E   
Sbjct: 166 RLEPENAGRLNTAVQRLRTRGARFSLHVQSTDGRTFEAEGRPAGALAVLWLRDVTGERAE 225

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIA 363
                      +       E +   P P +     G L + N ++       S +D    
Sbjct: 226 VSRLKERLRQAEFARARFEEHIGSAPFPAWRRGDDGALVWVNAAYARAVDAASPEDA--- 282

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
                      L   N      L R       A AR H I      +L +         +
Sbjct: 283 -------VTRGLELLNEETLSSLRRGLFDRSRARARSHAIMAGERRALDIV--------E 327

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
                  +GI  +  D    + ++   +    + L+  +  +AI   +  +   NRA   
Sbjct: 328 QRLGDGVSGIAIDVSDLDAAEAELRRHIESHAATLDRVTTAVAICGPDKRLTFRNRAFET 387

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMN-------HYLTEILSLDLRQTLEKITLGSTKEE 536
           L+G     +   P    +     +              +      R T          + 
Sbjct: 388 LWGLDPHWLDGGPSDGEILDELRARRRLPEQANFQAWKQTRMEIYRSTDPVDEYWHLPDG 447

Query: 537 KLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
           + + L                  +++E    ++  +   ++  +
Sbjct: 448 RTIKLLAQAHPF---GGVIYLYENVTERLNLESSYNTLARVQRE 488



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/389 (10%), Positives = 95/389 (24%), Gaps = 28/389 (7%)

Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270
            K  +S     +       P   L +    ++  +     D +++T     L  E +  P
Sbjct: 1   MKAATSRNLRGFLRAGGAVPALLLGLVPASAAAQQGAPLTDGLVETLSVLGLPPEAAGDP 60

Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330
               F+ +             +                 +         +     +   P
Sbjct: 61  ALAAFYALAAG-IAFAGSLAAITGLRASRAARRVALEREASLGVLQARLDAAEAILAAEP 119

Query: 331 IPFFVYSHGNLFYA---NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK---PV 384
              F+++   L  A     +   +    +      +G L       +L   NA +    V
Sbjct: 120 DAVFIWTPETLRAAPGTFQARPRIVGSTATLVDPSSGDLDFSYLLTRLEPENAGRLNTAV 179

Query: 385 MLYRSDRTCIAASA---RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
              R+     +         T +     + A+  +               G   E    +
Sbjct: 180 QRLRTRGARFSLHVQSTDGRTFEAEGRPAGALAVLWLRD---------VTGERAEVSRLK 230

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
              R+ E    +    + +          +G ++  N A ++       +         L
Sbjct: 231 ERLRQAEFARARFEEHIGSAPFPAWRRGDDGALVWVNAAYARAVDAASPEDAVTRGLELL 290

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDI 561
            + T S +   L +      R            +         I +       S    D+
Sbjct: 291 NEETLSSLRRGLFDRSRARARSHAIMAGERRALD---------IVEQRLGDGVSGIAIDV 341

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
           S+    + +L    +         +  +A
Sbjct: 342 SDLDAAEAELRRHIESHAATLDRVTTAVA 370


>gi|159897746|ref|YP_001543993.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
            aurantiacus ATCC 23779]
 gi|159890785|gb|ABX03865.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
            aurantiacus ATCC 23779]
          Length = 1877

 Score =  323 bits (829), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 135/816 (16%), Positives = 289/816 (35%), Gaps = 98/816 (12%)

Query: 86   TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
             +  D    L+ I+E           ++IG+    +     ++      +++        
Sbjct: 1048 VFIFDREHRLQYINEFAAGIFNRTPAELIGLLDEQMLTPATVESRRADAEIIFSTAQNLN 1107

Query: 146  KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
            + +++ +     +    L  LPI                ++     D +   + L +   
Sbjct: 1108 RESMFMVNNEETWFDFQL--LPIMDDQTSSPELIMSVGRNITDRKRDEQERERNLVETDR 1165

Query: 206  HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP--LLT 263
                ++    ++        +        +    +        + D +    +     + 
Sbjct: 1166 QRRTLQGILEALPVGVVVYNADFEMQLQNQSAQLIVGQPIGDVNPDAIDTVGETYQLFIP 1225

Query: 264  SEESSL-----------------PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS-- 304
              E++                    + D    +  ++T       + N+  +    ++  
Sbjct: 1226 GTETAFDPNDIPVFRAIRHGEHAQAEFDIAHPDGRRFTVLASGAPVFNSEGQVISGIALL 1285

Query: 305  ---------HRNHPSLSAYFDEGENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKY 354
                      +    L     E E L    +D  PI  +V  S G     N S + +   
Sbjct: 1286 QDITDRKLNEQERERLLQATIEQERLLKAILDNMPIGVYVVNSKGVSQMINRSTIEILGV 1345

Query: 355  KS---VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411
                    ++ +                 +    L+++  T   +   +  ++++ +  +
Sbjct: 1346 SGQMGAAVLDQSDLPRPKFLYEGTEKELDVHDTGLFKALSTKKPSRELVDVMRFDGKR-V 1404

Query: 412  AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI-------EVMQLCSI--LEATS 462
            ++  +     +   +      +  +  + R  +R+ E          ++L ++  +  ++
Sbjct: 1405 SVDSVAVPMFDDQQQLTGVLSLIQDVTEQRNAQREREQLLSQVEYRALELETVAQVSTSA 1464

Query: 463  DGIA--------IINR--------EGIILSTNRAVSKL-FGYPVEDI------LRKPFTV 499
             G+         +++            I   N     L   +   +I        +   +
Sbjct: 1465 AGLLNVEELLQTVVDLTKHRFGLYHAHIYLYNPESQLLELAFGAGEIGRTMVKEGRTIPL 1524

Query: 500  FLEQNTPSVMNHYLTEILSLDL---RQTLEKITLGSTKEEKLLSL---RIIIKKLPFSSC 553
              EQ+  +        I+  D+      L    L  T+ E    L    +++  L   S 
Sbjct: 1525 DREQSLVAQAGRARRSIIENDVRSNPSFLPHPLLPETRAEMATPLIAGSMLLGVLDVQSD 1584

Query: 554  YSLTMHDISEWK----------------QEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
             S    D  + K                +   + +   +  ++    KS FLA +SHE+R
Sbjct: 1585 QSNIFTD-DDRKIQTTLASQIAIALQNARLFAEQTATMQRLQELDQLKSAFLANMSHELR 1643

Query: 598  TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
            TPL +I+GF+EVI     GP+ N       + I R+G  +L+++ND+LD++KIESGK+ L
Sbjct: 1644 TPLNSILGFTEVILEGINGPI-NDLIHNDLSIIHRNGRHLLNLINDILDMAKIESGKLTL 1702

Query: 658  HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAI 716
              E   + E + E  S V   A +K + +      N+   + AD   ++Q+ LNI+ NA+
Sbjct: 1703 FRETFDVVEVLHEVASTVGPLATQKHLELLVDIEPNLKLPVYADRFRIRQVLLNIVGNAL 1762

Query: 717  HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
             FT  G  + I    T     +++++DTG+G+     +     F Q+ NS   +  GTGL
Sbjct: 1763 KFTEQGS-VTIGIDTTPTTR-MIKIQDTGIGIPLDNQDTIFMEFHQVDNSTTRKAGGTGL 1820

Query: 777  GLPLAKAMVDANMGKFYIFS--TPAKGTLIEIIFPL 810
            GLP+++ +V+ + GK  + S   P +G+L  I  P+
Sbjct: 1821 GLPISRHLVEMHGGKLSMVSSGNPGEGSLFTIELPI 1856



 Score =  156 bits (394), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 67/557 (12%), Positives = 165/557 (29%), Gaps = 63/557 (11%)

Query: 92   HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI----------------LHIDPNNHIGD 135
             G +   +      +G  A  M+G                           I+P   I  
Sbjct: 913  DGQITSFNRSAEVALGYSAHDMVGKSPAGAFHDQAEVMQHTEALRAKLGYAIEPFEAIVY 972

Query: 136  LLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA 195
              K+      + T    +G     P+ L+   +  +    +G+ G  I +   V      
Sbjct: 973  EAKQGQPSVKEWTYIAQDGR--RFPVQLSITALRDQQGNVTGYLG--IANDISVQKQQEQ 1028

Query: 196  LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL--RMKNKVSSLTEYYAHKDDV 253
              +  + ++  L E  +    +   ++ +         +  R   ++  L +        
Sbjct: 1029 ALRDSEVRYRSLAESSRDVVFIFDREHRLQYINEFAAGIFNRTPAELIGLLDEQMLTPAT 1088

Query: 254  LKTEKYPLLTSEESSLPE-QEDFHTINLNQYTKKQYFGTLQNNSKESFEYL--------- 303
            +++ +        ++    +E    +N  +         + ++   S E +         
Sbjct: 1089 VESRRADAEIIFSTAQNLNRESMFMVNNEETWFDFQLLPIMDDQTSSPELIMSVGRNITD 1148

Query: 304  ---SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYK---- 355
                 +         D         ++  P+   VY+    +   N S  L+        
Sbjct: 1149 RKRDEQERERNLVETDRQRRTLQGILEALPVGVVVYNADFEMQLQNQSAQLIVGQPIGDV 1208

Query: 356  SVDDIEIAGGLSTLLDAPKLSDNNAIK-PVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
            + D I+  G    L      +  +    PV           A      I         + 
Sbjct: 1209 NPDAIDTVGETYQLFIPGTETAFDPNDIPVFRAIRHGEHAQAEFD---IAHPDGRRFTVL 1265

Query: 415  FIPFEKANQFPENMPQNGIEPEDVDTRINKRKME-------IEVMQLCSILEATSDGIAI 467
                   N   + +    +  +  D ++N+++ E        +   L +IL+    G+ +
Sbjct: 1266 ASGAPVFNSEGQVISGIALLQDITDRKLNEQERERLLQATIEQERLLKAILDNMPIGVYV 1325

Query: 468  INREGIILSTNRAVSKLFGYPVE------DILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
            +N +G+    NR+  ++ G   +      D    P   FL + T   ++ + T +     
Sbjct: 1326 VNSKGVSQMINRSTIEILGVSGQMGAAVLDQSDLPRPKFLYEGTEKELDVHDTGLFKALS 1385

Query: 522  RQTLEKITLGSTK-EEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKK 576
             +   +  +   + + K +S+  +   +             + D++E +  + +      
Sbjct: 1386 TKKPSRELVDVMRFDGKRVSVDSVAVPMFDDQQQLTGVLSLIQDVTEQRNAQREREQLLS 1445

Query: 577  IAEKESSHKSDFLARVS 593
              E  +    + +A+VS
Sbjct: 1446 QVEYRALEL-ETVAQVS 1461



 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 52/541 (9%), Positives = 149/541 (27%), Gaps = 54/541 (9%)

Query: 95   LKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKRQNTWYGKTTLWPIE 153
            +  ++    +  G    ++IG     +  D         +   ++ +         +  +
Sbjct: 790  VVYVNPAFERITGYTPEEIIGKNCRFLQGDDTDQQGLRELRHAVREKRATRVLLRNYRKD 849

Query: 154  GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
            G+  +  +D+   P++  N E   F   G+        + +   +        + +    
Sbjct: 850  GSLFWNELDIN--PVFDENGELINF--IGVQQDVSERVEAQRALQESLGFQKTMVDSASY 905

Query: 214  HSSVEKEKYDIFSQQSPPPHL---RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270
                      I S              + V        H    +      L      ++ 
Sbjct: 906  MIISTTVDGQITSFNRSAEVALGYSAHDMVGKSPAGAFHDQAEVMQHTEALRAKLGYAIE 965

Query: 271  EQED----------------FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
              E                 +   +  ++  +     L++       YL   N  S+   
Sbjct: 966  PFEAIVYEAKQGQPSVKEWTYIAQDGRRFPVQLSITALRDQQGNVTGYLGIANDISVQKQ 1025

Query: 315  FDEGEN----LTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
             ++             +      F++     L Y N     +      + I +      +
Sbjct: 1026 QEQALRDSEVRYRSLAESSRDVVFIFDREHRLQYINEFAAGIFNRTPAELIGLLD--EQM 1083

Query: 370  LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
            L    +    A   ++   +       +     +  N E       +P    +Q      
Sbjct: 1084 LTPATVESRRADAEIIFSTAQ----NLNRESMFMVNNEETWFDFQLLPIMD-DQTSSPEL 1138

Query: 430  QNGIEPEDVDTRINKRKME-------IEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
               +     D + ++++ E        +   L  ILEA   G+ + N +  +   N++  
Sbjct: 1139 IMSVGRNITDRKRDEQERERNLVETDRQRRTLQGILEALPVGVVVYNADFEMQLQNQSAQ 1198

Query: 483  KLFGYPVEDI-------LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
             + G P+ D+       + + + +F+     +   + +    ++   +  +     +  +
Sbjct: 1199 LIVGQPIGDVNPDAIDTVGETYQLFIPGTETAFDPNDIPVFRAIRHGEHAQAEFDIAHPD 1258

Query: 536  EKLLSLRIIIKKLPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
             +  ++      +  S          + DI++ K  + +     +   ++       L  
Sbjct: 1259 GRRFTVLASGAPVFNSEGQVISGIALLQDITDRKLNEQERERLLQATIEQERLLKAILDN 1318

Query: 592  V 592
            +
Sbjct: 1319 M 1319



 Score = 99.3 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/425 (8%), Positives = 108/425 (25%), Gaps = 32/425 (7%)

Query: 184  VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVE-KEKYDIFSQQSPPPHLRMKNKVSS 242
                      + L +  ++  +  ++        +        +            ++  
Sbjct: 751  AQSFEEITRTQELLRIRERAITASNDGIVIVDPHQFDMPVVYVNPAFERITGYTPEEIIG 810

Query: 243  LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFH--TINLNQYTKKQYFGTLQNNSKESF 300
                +   DD  +     L  +       +        + + +  +     + + + E  
Sbjct: 811  KNCRFLQGDDTDQQGLRELRHAVREKRATRVLLRNYRKDGSLFWNELDINPVFDENGELI 870

Query: 301  EYLSHRNHPSLSAYFDEGENLT----PETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYK 355
             ++  +   S           +       VD         +  G +   N S  +   Y 
Sbjct: 871  NFIGVQQDVSERVEAQRALQESLGFQKTMVDSASYMIISTTVDGQITSFNRSAEVALGYS 930

Query: 356  SVDDIEIAGGLSTLLDAPKLSDN------------NAIKPVMLYRSDRTCIAASARLHTI 403
            + D +  +       D  ++  +               + ++                  
Sbjct: 931  AHDMVGKSP-AGAFHDQAEVMQHTEALRAKLGYAIEPFEAIVYEAKQGQPSVKEWTYIA- 988

Query: 404  QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
                     +        +Q        GI  +    +  ++ +    ++  S+ E++ D
Sbjct: 989  --QDGRRFPVQLSITALRDQQGNVTGYLGIANDISVQKQQEQALRDSEVRYRSLAESSRD 1046

Query: 464  GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
             + I +RE  +   N   + +F     +++       L   T          I S    Q
Sbjct: 1047 VVFIFDREHRLQYINEFAAGIFNRTPAELIGLLDEQMLTPATVESRRADAEIIFST--AQ 1104

Query: 524  TLEKITLGSTKEEKLLSLRIIIKKLPFSSC-----YSLTMHDISEWKQEKNKLSHAKKIA 578
             L + ++     E+       +  +                +I++ K+++ +        
Sbjct: 1105 NLNRESMFMVNNEET-WFDFQLLPIMDDQTSSPELIMSVGRNITDRKRDEQERERNLVET 1163

Query: 579  EKESS 583
            +++  
Sbjct: 1164 DRQRR 1168


>gi|117925572|ref|YP_866189.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117609328|gb|ABK44783.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 685

 Score =  323 bits (829), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 90/387 (23%), Positives = 168/387 (43%), Gaps = 38/387 (9%)

Query: 455 CSILEATSDGI---AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
             +L   +DG      ++ +  I+  NR + +  G    ++L +P      +     +  
Sbjct: 7   QLMLAGINDGALGSIFLDDQEQIVFWNRWMERASGLKRAEVLGRPLREVFPELVGGRLLR 66

Query: 512 YLTEILSLDLRQTLEKIT------------LGSTKEEKLLSLRIIIKKLPFSSCYSLT-M 558
            +   L   L   L                +          + I   +      + L  +
Sbjct: 67  AVATALETGLPALLSHKLNLWPLPLYPSYAVRPHGPRLCQQIMINALRPHGEKRFVLIQI 126

Query: 559 HDISE--------------WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
            DIS                 Q + +L+ ++  A++ +  KS+FLA +SHEIRTP+ AII
Sbjct: 127 QDISHTVQREQLLQEQTRVLMQREEELTASRLKADQANQAKSEFLANMSHEIRTPMNAII 186

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           G ++++         N     Y     R+G  +L+++ND+LD+SK+E+ ++ L   P  L
Sbjct: 187 GMADLLLETEL----NKDQRRYVQIFARAGASLLELINDVLDLSKVEADRLELEHRPFDL 242

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG 723
              V  A+ +  L   EK + +    +   PR +++D + ++QI +N+L NA+ FT SG 
Sbjct: 243 WALVEGAVEIFTLRTQEKGVKLDFELSARAPRYVISDQKRLRQILVNLLGNAVKFTQSGQ 302

Query: 724 ---QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
               + +     +   +  RV+D+G+GM+  + +   +PF Q   S   +  GTGLGL +
Sbjct: 303 IQLWVDVRDCEDAGGWLYFRVQDSGIGMSKAQQKSIFEPFVQADASVTRQHGGTGLGLAI 362

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEII 807
            K +V+   G  ++ S   +G+     
Sbjct: 363 CKKLVELLSGDIWLESELGQGSRFHFT 389



 Score = 44.6 bits (104), Expect = 0.077,   Method: Composition-based stats.
 Identities = 37/255 (14%), Positives = 75/255 (29%), Gaps = 18/255 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL-HIDPNNHIGDLLKRQNT--WYG 145
           +D    +   +  + +  G    +++G  L +V   L        +   L+         
Sbjct: 23  LDDQEQIVFWNRWMERASGLKRAEVLGRPLREVFPELVGGRLLRAVATALETGLPALLSH 82

Query: 146 KTTLWPI----------EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA 195
           K  LWP+           G  L   I + AL  +   R F   +   I H  + +   + 
Sbjct: 83  KLNLWPLPLYPSYAVRPHGPRLCQQIMINALRPHGEKR-FVLIQIQDISHTVQREQLLQE 141

Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDD 252
             + L ++   L   +       + K +  +  S     P   +      L E   +KD 
Sbjct: 142 QTRVLMQREEELTASRLKADQANQAKSEFLANMSHEIRTPMNAIIGMADLLLETELNKDQ 201

Query: 253 VLKTEKYPLL-TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
               + +     S    + +  D   +  ++   +     L    + + E  + R     
Sbjct: 202 RRYVQIFARAGASLLELINDVLDLSKVEADRLELEHRPFDLWALVEGAVEIFTLRTQEKG 261

Query: 312 SAYFDEGENLTPETV 326
                E     P  V
Sbjct: 262 VKLDFELSARAPRYV 276


>gi|328555723|gb|AEB26215.1| sensory box histidine kinase WalK [Bacillus amyloliquefaciens
           TA208]
 gi|328914109|gb|AEB65705.1| sensory box histidine kinase WalK [Bacillus amyloliquefaciens LL3]
          Length = 611

 Score =  323 bits (829), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 86/374 (22%), Positives = 155/374 (41%), Gaps = 23/374 (6%)

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             +    +   E E  +L S++   +DG+   NR G I+  N    +L     E  L  P
Sbjct: 248 TRELEDAQAMTEGERRKLSSVIAYMTDGVIATNRNGAIILLNSPALELLNVSRETALEMP 307

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556
            T  L           + +  S+ L    +  T         ++  +I ++         
Sbjct: 308 ITSLLGIKENFTFEDLVEQQDSMLLEIDRDDETTVLR-----VNFSVIQREHGKIDGLIA 362

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            ++D++E ++                  + +F+A VSHE+RTPLT +  + E +    + 
Sbjct: 363 VLYDVTEQEKL--------------DRERREFVANVSHELRTPLTTMRSYLEALAEGAW- 407

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
                    +          ++ +VNDLL +SK +S     + E + +   +S  I   +
Sbjct: 408 -ENKEIAPRFLMVTQNETERMIRLVNDLLQLSKFDSKDYQFNREWIHMIRFMSLIIDRFE 466

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
               E+ +       +    +  D   V Q+  NI+SNA+ ++P GG +  S      EE
Sbjct: 467 -MTKEQHVEFIRELPDRNLYVEIDQDKVTQVLDNIISNALKYSPEGGHVTFSVDVNEKEE 525

Query: 737 VI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
           ++ + V+D G+G+   ++EK    F ++  ++  +  GTGLGL +AK MV A+ G  +  
Sbjct: 526 LLYISVKDEGIGIPKKDVEKVFDRFYRVDKARTRKLGGTGLGLAIAKEMVQAHGGDIWAD 585

Query: 796 STPAKGTLIEIIFP 809
           S   KGT I    P
Sbjct: 586 SVEGKGTKITFTLP 599


>gi|209516776|ref|ZP_03265627.1| signal transduction histidine kinase with CheB and CheR activity
            [Burkholderia sp. H160]
 gi|209502739|gb|EEA02744.1| signal transduction histidine kinase with CheB and CheR activity
            [Burkholderia sp. H160]
          Length = 1360

 Score =  323 bits (829), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 128/734 (17%), Positives = 246/734 (33%), Gaps = 68/734 (9%)

Query: 95   LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEG 154
            +  +S+   + +     +     +  V   L ++    I   L    +   +      EG
Sbjct: 546  IVHLSDRAGRFLQYSGGEPSHNIVAVVRPELRLELRTAIYQALHTNRSVEARRVRIEREG 605

Query: 155  TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214
             + +  +++ A P++                                             
Sbjct: 606  RSYF--VNMTARPVHDPEAN------------------------------------ADFV 627

Query: 215  SSVEKEKYDIFSQQSPPPHLRMKNKVSS-LTEYYAHKDDVLKTEKYPLLTSEESSLPEQE 273
              +  E  D             K+ + S L        + L++      TS E      E
Sbjct: 628  LVLFDEVEDSMGNAETASVDVQKDPIISQLERELQRTKEQLQSTIEQSETSTEELKASNE 687

Query: 274  DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG--ENLTPETVDKCPI 331
            +   IN    +  +   T +   +   E L+  N    S   + G   +     +    I
Sbjct: 688  ELQAINEELRSATEELETSKEELQSINEELTTVNAELKSKVEETGKINDDLHNLIAANDI 747

Query: 332  P-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390
               FV  +  +    P    +      D       ++  L+  KL+D+ A     L   +
Sbjct: 748  GTIFVDRNICIKRYTPRATDVFSIIPSDIGRSLLDITHRLEYDKLADDAAEAFDSLRLIE 807

Query: 391  RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450
            R   ++  R                                    +    R  + ++   
Sbjct: 808  RELKSSDGR------------WYLARFVPYRTTEDRIDGAVLSFIDITGRRQAEDRLREG 855

Query: 451  VMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
              ++  + E+T D  I   +  G+I S N A  ++FGY   +++ +   +       +  
Sbjct: 856  ERRMRIVGESTRDYAIITFDDSGVINSWNAAAERIFGYSEAEMIGQSAEILYTNEDRAAN 915

Query: 510  NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQE 567
                 E+    L    E+      K+        ++ +L       ++    D+ E+  +
Sbjct: 916  VAQ-RELAEARLNGRAEEECWHLRKDGTRFFASGVLSRLDEPGISGFAKITRDLGEFATD 974

Query: 568  KNKLSHAKKIAEKE------SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
                      + +          + +FLA VSHE++ PL  I   +E +  +      N 
Sbjct: 975  PASGRGTHVESLRAASERDAQRRRDEFLAIVSHELKHPLNLISASAE-LIARAPETRHNL 1033

Query: 622  RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
                  + I R+      I++DLLDIS++ +GK+++    V + E V    S VQ  A +
Sbjct: 1034 NVSRATDTIRRTVIGQAQIIDDLLDISRVRTGKLSVVRTVVDVREIVQRVCSAVQDDAAQ 1093

Query: 682  KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
            + + +R   A+    + ADL  ++QI  N++SNA+ FT  G  I +S     + E +LRV
Sbjct: 1094 RGVALRVELADTPVIVHADLTRIEQIVWNLISNALKFTQRG-TIDVSLQVNDHAEAVLRV 1152

Query: 742  RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAK 800
             DTG G+    L      F Q  +    R  G G+GL L + +V+ + G     S    +
Sbjct: 1153 SDTGSGIEPSLLPHIFDMFQQSRDPGTRR-GGLGIGLALVRDLVNLHGGAVRAESDGVGR 1211

Query: 801  GTLIEIIFPLYDTS 814
            G    +  P +  +
Sbjct: 1212 GATFTVTLPTHRLA 1225



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/314 (10%), Positives = 73/314 (23%), Gaps = 27/314 (8%)

Query: 90   DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
            D  G +   +    +  G    +MIG     +        N    +L + +     +   
Sbjct: 875  DDSGVINSWNAAAERIFGYSEAEMIGQSAEILYTNEDRAANVAQRELAEARLNGRAEEEC 934

Query: 150  W--PIEGTNLYVPIDLAALPIYSRNREFSGFRGFG-IVHVNRVDNDPRALGK-------- 198
            W    +GT  +    L+            G  GF  I           A G+        
Sbjct: 935  WHLRKDGTRFFASGVLS---RLDE----PGISGFAKITRDLGEFATDPASGRGTHVESLR 987

Query: 199  -RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257
               ++      +      S E +        S     R      +L    A         
Sbjct: 988  AASERDAQRRRDEFLAIVSHELKHPLNLISASAELIARAPETRHNLNVSRATDTIRRTVI 1047

Query: 258  KYP-----LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
                    LL        +     T+   +   ++    +Q+++ +    L      +  
Sbjct: 1048 GQAQIIDDLLDISRVRTGKLSVVRTVVDVREIVQRVCSAVQDDAAQRGVALRVELADTPV 1107

Query: 313  AYFDEGENLTPETVDKCPIPFFVYSHGNL---FYANPSFLLLTKYKSVDDIEIAGGLSTL 369
                +   +     +           G +      N     + +            L  +
Sbjct: 1108 IVHADLTRIEQIVWNLISNALKFTQRGTIDVSLQVNDHAEAVLRVSDTGSGIEPSLLPHI 1167

Query: 370  LDAPKLSDNNAIKP 383
             D  + S +   + 
Sbjct: 1168 FDMFQQSRDPGTRR 1181



 Score = 40.4 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 19/200 (9%), Positives = 52/200 (26%), Gaps = 11/200 (5%)

Query: 272 QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI 331
            +       N   +      +  +   S   +     P     F  G+          P 
Sbjct: 477 DKRSRIYRANMAVRGDTPVPIAISGTMSSRPVVTTLQPPGRRRFSFGDLHQRLVEQYAPP 536

Query: 332 PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL----------STLLDAPKLSDNNAI 381
              V     + + +       +Y   +       +          + +  A   + +   
Sbjct: 537 SVLVSRDSEIVHLSDRAGRFLQYSGGEPSHNIVAVVRPELRLELRTAIYQALHTNRSVEA 596

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
           + V + R +      +     +     N+  +  +  E  +        +    +D    
Sbjct: 597 RRVRIER-EGRSYFVNMTARPVHDPEANADFVLVLFDEVEDSMGNAETASVDVQKDPIIS 655

Query: 442 INKRKMEIEVMQLCSILEAT 461
             +R+++    QL S +E +
Sbjct: 656 QLERELQRTKEQLQSTIEQS 675


>gi|168334601|ref|ZP_02692754.1| multi-sensor signal transduction histidine kinase [Epulopiscium sp.
           'N.t. morphotype B']
          Length = 609

 Score =  323 bits (829), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 96/478 (20%), Positives = 183/478 (38%), Gaps = 48/478 (10%)

Query: 333 FFVYSHGNLFYAN-PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR 391
            +V S     YAN  + +      ++  + +AG  S +          A+        + 
Sbjct: 167 IYVISDTAEIYANVDTVMSTLGMGTLVALALAGAFSAIFARMITQPIKALTRSAKLLQEG 226

Query: 392 TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV 451
                                  F      +                + R     +  E 
Sbjct: 227 ----------------------AFKKIPNESSDEIGQLTMSFNQMAQELRRTLLDISSEK 264

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
            +L  ILE  +DG+   NR+G+++  N     + G    D            +       
Sbjct: 265 NKLERILENLADGVLAFNRQGVLIHANSVSYDMIGQSTIDHRFDFIFPKFGLDVSFDNIL 324

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571
              E     +   +    +                        ++ M D++  ++     
Sbjct: 325 EDDEQYKQGIMMNIGDKFIS-------FHFASYESSHGEKEGLTVVMQDVTSQQKL---- 373

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
                        + DF+A VSHE+RTPLT I  ++E + +           +++ + ++
Sbjct: 374 ----------DQMRKDFVANVSHELRTPLTTIKTYTETLISGAIDE--KETALDFLSVME 421

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
           +  + +  +V+DLL++SKI++ +M L+ + + +   + + I    + A  K   I+ S+ 
Sbjct: 422 KETDRMTTLVHDLLELSKIDNKQMQLNIQVMDIYSLLLDTIRAQAIQAKCKHHQIKLSYN 481

Query: 692 NNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
            N    I  D   + Q+  NILSNAI +T   GQI I+ +     +V+++V+DTG+GM+ 
Sbjct: 482 KNKEYLIEGDPARIGQVFHNILSNAIKYTEDNGQIKINLSSNDQ-QVVIKVKDTGIGMSK 540

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            +LE+  + F +   ++  +  GTGLGL +AK MV+ + G   + S    GT +   F
Sbjct: 541 KDLERIFERFYRADKARSRKMGGTGLGLSIAKEMVELHGGSIKMESALGHGTTVIXTF 598


>gi|83312029|ref|YP_422293.1| sensor protein barA [Magnetospirillum magneticum AMB-1]
 gi|82946870|dbj|BAE51734.1| Sensor protein barA [Magnetospirillum magneticum AMB-1]
          Length = 1248

 Score =  323 bits (829), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 114/601 (18%), Positives = 211/601 (35%), Gaps = 47/601 (7%)

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
            H    +      L   E+         H               +     E         
Sbjct: 348 WHPLSQVNRALGQLARGEDRMDLPLVRRHDEIGEVVDSLTRLAAVVRERAEESHVSGLVA 407

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
             +      E      + +     P         F  +     L           A    
Sbjct: 408 KITSGLQSAEDLASLSQVLFTHLEPILHLGFAGYFRLDDQARALLSCGGYARDGEASPPG 467

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ-----------WNRENSLAMTFI 416
            +     L    A++   +  +D       AR   +             +    L +  +
Sbjct: 468 RVELGDGLVGECALEKREILIADPPPGYVRARTGLLSALPRAVLILPVLSGGQCLGVIEL 527

Query: 417 PF------EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL---------------- 454
                          + +P   +  E +      +++     +L                
Sbjct: 528 AMLQPLGGTGRRVLDDVLPLLAMRMEILARTERTQQLLAATRELAETLEANQTEIQSLLS 587

Query: 455 --CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
              +I EA + GIA + +  +I+  N  + KLFGY   +++ +   ++   +        
Sbjct: 588 EQQAIFEAATVGIAFL-KNRVIVRGNPRLDKLFGYGPGELVGQSTRIWFADDAAFADVGG 646

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF-SSCYSLTMHDISEWKQEKNKL 571
             E LS       E+  L   +      +          S      + D+++ +      
Sbjct: 647 AYEALSRGEVHQREQEYLRKDQSRFWCRISGSAIDPSDLSRGTVWMLEDVTQARATAEAQ 706

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
           + AK  AE  +  KSDFLA +SHEIRTP+ AIIG + +          +PR  +Y   I 
Sbjct: 707 ARAKDAAEDAARTKSDFLANMSHEIRTPMNAIIGMAHLALKTDL----DPRQKDYVRKIQ 762

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
           +SG  +L I+ND+LD SKIE+GK+ +    + LD+ +    +L+   A  K + +     
Sbjct: 763 QSGQHLLGIINDILDFSKIEAGKLEVEATEIHLDKVLENVGNLISEKATAKGLELLFDVG 822

Query: 692 NNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN----EEVILRVRDTGV 746
             +P  ++ D   + Q+ +N  +NA+ FT +G +I+++     +      +   VRDTG+
Sbjct: 823 AGVPLDLMGDALRLGQVLINYANNAVKFTEAG-EIVVAVRLMEDLGPDVMLRFEVRDTGI 881

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+T+ +  +  + F Q   S   +  GTGLGL ++K + +   G   + S P +G+    
Sbjct: 882 GLTDEQKARLFQSFSQADTSTTRKFGGTGLGLAISKKLAELMGGSVGVDSVPGQGSTFWF 941

Query: 807 I 807
            
Sbjct: 942 T 942



 Score = 37.7 bits (86), Expect = 8.4,   Method: Composition-based stats.
 Identities = 14/122 (11%), Positives = 34/122 (27%), Gaps = 15/122 (12%)

Query: 95  LKEISEELPKTIGNYAFKMIGMR----LCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150
           +   +  L K  G    +++G        D +    +       + L R      +    
Sbjct: 608 IVRGNPRLDKLFGYGPGELVGQSTRIWFADDAAFADV---GGAYEALSRGEVHQREQEYL 664

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
             + +  +  I  +A+     +R        G V +       RA  +   +      + 
Sbjct: 665 RKDQSRFWCRISGSAIDPSDLSR--------GTVWMLEDVTQARATAEAQARAKDAAEDA 716

Query: 211 KK 212
            +
Sbjct: 717 AR 718


>gi|150392433|ref|YP_001322482.1| multi-sensor signal transduction histidine kinase [Alkaliphilus
           metalliredigens QYMF]
 gi|149952295|gb|ABR50823.1| multi-sensor signal transduction histidine kinase [Alkaliphilus
           metalliredigens QYMF]
          Length = 599

 Score =  323 bits (829), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 82/376 (21%), Positives = 160/376 (42%), Gaps = 26/376 (6%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +   ++M  E  ++ +I+   +DG+     EG ++  N    ++     +DIL K F   
Sbjct: 243 KSVLQEMSNEKQKMDTIITYMADGLIATTMEGKVIHANPRALEMLRIQEKDILEKHFDET 302

Query: 501 LEQNTPSVMNHYLTEILSL-DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLT 557
            +Q    +   YL    +     Q +E            L                  + 
Sbjct: 303 FKQLNERLTIEYLQNSPAKWSGSQMIEMEY------GITLRANYAPYMNEKGDLDGIIVL 356

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
             D++E+++ +              + + +F+A VSHE++TPLT I  ++E +       
Sbjct: 357 FQDVTEYEKLE--------------NMRKEFVANVSHELKTPLTTIKSYTETLLEGAM-- 400

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
                  ++ N ID   + +  +V DLL +S  +  +     + V L+  V +A+  + +
Sbjct: 401 ENQELGKQFLNVIDNEADRMARLVRDLLQLSNADYQQTKWDKKEVDLNYIVEKAVLNLSV 460

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737
            A  K   +          + AD   ++Q+ LN++SNAI +T +GG I +S    +    
Sbjct: 461 SAKNKEQELNYKGLREGVSVWADENRIEQVLLNVISNAIKYTANGGCIDVSLE-ETQNHA 519

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
            +++ D G+G+   +L +  + F ++  ++     GTGLGL +AK ++D + G   + S 
Sbjct: 520 TIKITDNGMGIPKEDLPRIFERFYRVDKARSREMGGTGLGLSIAKQIIDVHEGMIKVDSR 579

Query: 798 PAKGTLIEIIFPLYDT 813
            + GT + I  PL   
Sbjct: 580 ESGGTAVLIELPLLQE 595


>gi|197117530|ref|YP_002137957.1| PAS/PAS domain-containing sensor histidine kinase [Geobacter
           bemidjiensis Bem]
 gi|197086890|gb|ACH38161.1| sensor histidine kinase, PAS and PAS domain-containing protein
           [Geobacter bemidjiensis Bem]
          Length = 520

 Score =  323 bits (829), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 99/535 (18%), Positives = 197/535 (36%), Gaps = 35/535 (6%)

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTK 353
           ++     E    +         ++ +      +D           GN+   N     +TK
Sbjct: 9   DSGARKQEPGQLQGDLPFRLLVEQVKEYAVALLD---------PQGNISSWNAGAEQITK 59

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
           Y+  + I      S L    +L      + + + RS  +      RL        +    
Sbjct: 60  YRGSEVIGK--HFSLLHPKEELRSGAPERELAIARSLGSLDLQGWRL----KKDGSRFWA 113

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
                   +Q         I  ++ + R +   +      L  + E   DGI +++  G+
Sbjct: 114 AITLTALYDQGENLAGFALIAHDNTEKRASDEALVKSRNMLERLFETAPDGIVVVDDNGV 173

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ--TLEKITLG 531
           I  TN+     FGY  E++L +   + + +        +     +    +   +     G
Sbjct: 174 IRRTNQQAEITFGYMREEMLGQRIELLVPERYHKHHRQHRRNYFADPRARKMGIGLELYG 233

Query: 532 STKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKN-------KLSHAKKIAEKES 582
             K+   + + I++  +           + DI+  +Q +         L +  +     +
Sbjct: 234 RHKDGHEIPVDIMLNPIETPDGTWVFAVIRDITSQRQGEAKILELNLALRNQLEQLGASN 293

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
                F   VSH++R PL  IIGF + + N + G + + +   Y   I  + N +  +++
Sbjct: 294 KELESFSYSVSHDLRAPLRHIIGFVD-LLNAKAGNVLDEKSRHYLEVISEAANKMGLLID 352

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702
           DLL  S++  G+  +    V L   V E ++ ++  + E+   I+   A  +P +L D  
Sbjct: 353 DLLAFSRM--GRSEMMKGWVDLGLLVREIVNDLESDSKER--EIQWDIAP-LPIVLGDAA 407

Query: 703 SVKQIALNILSNAIHFTPSGGQIIIST-THTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761
            ++Q+ +N++ NA+ FT S  +  I+       +E  + VRD GVG       K    F 
Sbjct: 408 MLRQVLINLIGNAVKFTRSREEAKIAIGAIDQEQETEIFVRDNGVGFDEAYASKLFGLFQ 467

Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           ++        EGTG+GL + + +V  + G+ +       G       P      P
Sbjct: 468 RLHA--NEEFEGTGVGLAIVQRIVLRHGGRVWAEGAVDGGATFRFSLPKGLNPAP 520



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/292 (7%), Positives = 67/292 (22%), Gaps = 23/292 (7%)

Query: 57  QNQESVSNTNYLDSENTFVFDPIPRTVRFTWN---------IDAHGYLKEISEELPKTIG 107
            +++  +++     E   +        R             +D  G +   +    +   
Sbjct: 2   TDKDLTTDSGARKQEPGQL--QGDLPFRLLVEQVKEYAVALLDPQGNISSWNAGAEQITK 59

Query: 108 NYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALP 167
               ++IG     +     +       +L   ++        W ++         +    
Sbjct: 60  YRGSEVIGKHFSLLHPKEELRSGAPERELAIARSLGSLDLQGWRLKKDGSRFWAAITLTA 119

Query: 168 IYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ 227
           +Y +    +GF    I H N           +       L E       V  +   I   
Sbjct: 120 LYDQGENLAGFA--LIAHDNTEKRASDEALVKSRNMLERLFETAPDGIVVVDDNGVIRRT 177

Query: 228 QSPPPHL-------RMKNKVSSLTEYYAHKDDVLKTEK-YPLLTSEESSLPEQEDFHTIN 279
                          +  ++  L     HK         +    + +  +  +      +
Sbjct: 178 NQQAEITFGYMREEMLGQRIELLVPERYHKHHRQHRRNYFADPRARKMGIGLELYGRHKD 237

Query: 280 LNQYTKKQYFGTLQNNSKESFEYL--SHRNHPSLSAYFDEGENLTPETVDKC 329
            ++         ++         +     +     A   E        +++ 
Sbjct: 238 GHEIPVDIMLNPIETPDGTWVFAVIRDITSQRQGEAKILELNLALRNQLEQL 289


>gi|229170167|ref|ZP_04297854.1| hypothetical protein bcere0007_51010 [Bacillus cereus AH621]
 gi|228613312|gb|EEK70450.1| hypothetical protein bcere0007_51010 [Bacillus cereus AH621]
          Length = 586

 Score =  323 bits (829), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 84/376 (22%), Positives = 161/376 (42%), Gaps = 25/376 (6%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +  +   E E  +L S+L   +DG+   +R+G I+  N    K+     E  L +     
Sbjct: 231 QQARSSTESERRKLSSVLSHMTDGVIATDRKGDIILLNDPAEKMLNVSRETALDQSVLEV 290

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
           L       ++H   E  S+ L  +                  +I K+   ++     ++D
Sbjct: 291 LGIQEEFTLDHLYEEPDSVLLDFSTRNEPYILRAS-----FSVIQKETGKANGLIAVLYD 345

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           ++E ++ + +              + +F+A VSHE+RTPLT +  + E + +  +     
Sbjct: 346 VTEQERIEQE--------------RREFVANVSHELRTPLTTMRSYLEALTDGAWQDPNI 391

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
                +          ++ +VN LL +SK++S +  L  E V   +  +  I   +  + 
Sbjct: 392 APQ--FLTVTQEETERMIRLVNALLQLSKLDSTEHRLMKEWVDFTDFFNNVIDRFE-MSK 448

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV-IL 739
           E+ +  + SF+     I  D   + Q+  NI+SNA+ ++P GG +          E+  +
Sbjct: 449 EQNVSFKRSFSKKSRFIDMDTDKITQVLYNIISNALKYSPEGGTVT--YRLRDRGELLEI 506

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V D G+G+    ++K  + F ++  ++  +  GTGLGL +AK M++A+ G  +  S   
Sbjct: 507 SVSDQGMGIPKENVDKIFERFYRVDKARSRQMGGTGLGLAIAKEMIEAHGGSVWAKSEEG 566

Query: 800 KGTLIEIIFPLYDTSH 815
           KGT I    P+     
Sbjct: 567 KGTTIYFTLPMATDEE 582


>gi|150398898|ref|YP_001322665.1| PAS/PAC sensor signal transduction histidine kinase [Methanococcus
           vannielii SB]
 gi|150011601|gb|ABR54053.1| PAS/PAC sensor signal transduction histidine kinase [Methanococcus
           vannielii SB]
          Length = 421

 Score =  323 bits (829), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 96/409 (23%), Positives = 175/409 (42%), Gaps = 12/409 (2%)

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
            E S   ++ P  +            +     D   +++++      L         G  
Sbjct: 17  GERSAKKSYYPQLQEKLKYLEEKSIALLNILEDLEDSEKELRESEALLQIAGRTAKFGGF 76

Query: 467 IIN-REGIILSTNRAVSKLFGYPVED-ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
             +  E  I  + +A   +F  P     L        +    ++                
Sbjct: 77  SADIGEQKITLSKQAAL-IFEMPENYSPLIDELIDCYDTKYQNIAKELFFNCGINGTPYD 135

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEK 580
           +E   +  TK  K + +R   + +  S            DI+E K  + KL  +    ++
Sbjct: 136 IEVELI--TKNGKKIWVRTTGEAVKNSKRNIVNVYGAFQDITEQKLAEQKLKKSYDELKE 193

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
               KS+F A +SHEIRTP+T+I G++E++ ++  G L N       N I  +   +  +
Sbjct: 194 LDRLKSEFTAIISHEIRTPITSIKGYTELLNDESMGKLNN-NQKMCLNTILENVIRLGRL 252

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILAD 700
           V+D+LDIS+IE     L+ + V + + +   +S +   A +K I +     N    I AD
Sbjct: 253 VSDVLDISRIERNTFTLNIQKVDVKDVLEHVLSELAPIALKKHIKLSLEIPN--ITIDAD 310

Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760
              + Q+  NI  NAI F+P   ++ I+     N ++++ ++D G+G++  E EK    F
Sbjct: 311 KDRLNQVFTNITENAIKFSPENEKVEITGKEGLNSDILISIKDNGIGISKNEFEKIFDRF 370

Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            QI +S + +  G GLGLP++K ++ A+ GK ++ S   +G+   I  P
Sbjct: 371 YQIDSSNRRKKGGAGLGLPISKGIIKAHNGKIWVESELNQGSTFYISLP 419


>gi|157162694|ref|YP_001460012.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           HS]
 gi|157068374|gb|ABV07629.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           HS]
          Length = 778

 Score =  323 bits (829), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 86/438 (19%), Positives = 180/438 (41%), Gaps = 21/438 (4%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L +           L  +Q     +     I   +  +         ++ E
Sbjct: 81  EESRQRLSRLVQKLEEMRERDLSL-NVQLKDNIAQLNQEIAVREKAEAELQETFGQLKIE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             +    + ++E +   L S L+A+ D +   N +      NRA+  L G   + ++   
Sbjct: 140 IKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCY 554
                     + +     ++   ++  T E+        +    +R +    ++      
Sbjct: 200 PADVYSPEAAAKVIETDEKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGL 259

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+        +   E+ S  K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 260 MGFGRDITERKR-------YQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE 312

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     +Y   I  S   + +I ND++D+ K+E  K+ L  +PV     +++  +L
Sbjct: 313 LTA----EQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENL 368

Query: 675 VQLYANEKRILIRTSFANNIP---RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
             L A +K   +R +    +P   +++ D   ++QI  N++SNA+ FT  G Q+ +   +
Sbjct: 369 SALQAQQKG--LRFNLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQG-QVTVRVRY 425

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMG 790
              + +   V D+G+G+   EL+K    + Q+ +S   +   GTG+GL +++ +     G
Sbjct: 426 DEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGG 485

Query: 791 KFYIFSTPAKGTLIEIIF 808
              + S   KG+   +  
Sbjct: 486 DIKVTSEQGKGSTFTLTI 503


>gi|254425627|ref|ZP_05039344.1| PAS fold family [Synechococcus sp. PCC 7335]
 gi|196188050|gb|EDX83015.1| PAS fold family [Synechococcus sp. PCC 7335]
          Length = 1428

 Score =  323 bits (829), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 109/804 (13%), Positives = 250/804 (31%), Gaps = 113/804 (14%)

Query: 92   HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN-TWYGKTTLW 150
             G+ K ++    +T+G    +++     +            +   L         +    
Sbjct: 530  DGHFKRLNPAFEETLGYSTNELLSKPFLEFVHPEDKAATKEVAAQLLTGTLITAFENRYR 589

Query: 151  PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
              +G+  ++     A+P     R       +          +     +   K+   + E+
Sbjct: 590  CKDGSYRWLLWAATAVP---EQRSI-----YATARDITERKEMERTLQDRIKQQMTVAEL 641

Query: 211  KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV----------------- 253
             +   S++          +    +     V          D                   
Sbjct: 642  GQIALSLDDLADLDELMNAAAIAVAQTLDVDYCKVLELLPDGESLLLKAGVGWQPGLVGN 701

Query: 254  ------------------LKTEKYPLLTSEESSLPEQEDFHTI-----------NLNQYT 284
                                     L T    S PE    H +                 
Sbjct: 702  LVIGTECSSQAGYTLRSDRPVVVADLRTETRFSGPELLSNHNVVSGMSVIIFGQQQPYGI 761

Query: 285  KKQYFGTLQNNSKESFEYLSHR--------NHPSLSAYFDEGENLTPETVDKCPIPFFVY 336
               +   L++ S E   +L                 A   + E       +  P   +  
Sbjct: 762  LSAHTTQLRSFSDEDTAFLQSVANLLAQAIEQKHAQAIVVQSEQDYRTLAENLPGMVYRV 821

Query: 337  SHG---NLFYANPSFLLLTKYKSVDD-IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
                   + + N     LT +   +        + +L+          I+ V    + +T
Sbjct: 822  FPDQQWRMMFLNNQCQTLTGFTQAELQGGEVCSIDSLIVPEDRPQ--VIEVVRAGVAQQT 879

Query: 393  CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
                  R+     +              A    +    +G+  +  + ++ ++++E +  
Sbjct: 880  PFQVEYRIRDKARD---IRYFWEKGQPIAANNGQPAHIDGVIFDITNRKLAQQRIEEQ-- 934

Query: 453  QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
               ++L+  +D I + +  G IL  N+    ++G+  E+ L +     L           
Sbjct: 935  --AALLDVATDAIFVYSLSGEILFWNKGAEAIYGWSAEEALSQNVYQLLYPEDSQENEVS 992

Query: 513  LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEK 568
            L  +       + +      T++++++++      +               DI+E KQ +
Sbjct: 993  LERLAPTG---SWQGELQQITQQKQIITVMSRWTLMKDQQGNPKSILSVDTDITEAKQLE 1049

Query: 569  NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
             +   A+++            + ++H++   LT I G ++++  Q   P  +    +   
Sbjct: 1050 AQFLRAQRL-----ESVGTLASGIAHDLNNILTPIYGVAQLLSMQL--PDADDPIRQQLQ 1102

Query: 629  YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
             +  S      +VN +L  ++ + G       P+++   + E +         K + I  
Sbjct: 1103 LLKTSAKQGSRMVNQVLSFARGKEG----DRAPLAIKHLIVE-LRNFATQTFPKSLTITA 1157

Query: 689  SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS--------------N 734
            +  N++  + AD   + Q  +N+L NA    P+GGQ+ +S  +                 
Sbjct: 1158 NIPNDLRMVNADATHLYQALMNLLVNARDAMPNGGQLTLSAVNLDLDEAFASSHIDASVG 1217

Query: 735  EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
              +++ V D GVG+   +L++  +PF     S      GTGLGL     +V  + G   +
Sbjct: 1218 PYLLITVSDNGVGIPADQLDRIFEPFFSTKQSI----GGTGLGLSTVHGIVKNHDGFVTV 1273

Query: 795  FSTPAKGTLIEIIFPLYDTSHPHD 818
            +S   KGT  +I  P  +++  ++
Sbjct: 1274 YSEVGKGTQFKIYLPAIESTDTNE 1297



 Score = 83.9 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 55/348 (15%), Positives = 100/348 (28%), Gaps = 27/348 (7%)

Query: 238 NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297
           ++V  L +  A        E   L+  + S L  +E+           +      ++   
Sbjct: 320 DQVGQLEQQNAELLQRRNQELKSLVAQKVSRLQRREETLRNLALGVGTETGEDFWRSLVT 379

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSV 357
              E L            D          D   +P F YS             L      
Sbjct: 380 YLTEALQMDYAVVGKLEGDSRVQTLAAYGDGQVLPNFSYS-------------LEGTPCE 426

Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
           D +     +S      +   +  +K + +     T +  +          +    +  + 
Sbjct: 427 DVVTRQVCVSHQAVQQQYPQDQMLKELQVESYLGTPLRNT--------KGQVEGLLVVMS 478

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI-LEATSDGIAIINREGIILS 476
            E   +         I      T I ++KM  E     S+ L+ T   IA ++ +G    
Sbjct: 479 HEPRTETGFLEEVLSIFAVRASTEIERQKMAAEQQSFFSLPLDLT--CIASLD-DGHFKR 535

Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
            N A  +  GY   ++L KPF  F+     +       ++L+  L            K+ 
Sbjct: 536 LNPAFEETLGYSTNELLSKPFLEFVHPEDKAATKEVAAQLLTGTLITAF--ENRYRCKDG 593

Query: 537 KLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
               L      +P       T  DI+E K+ +  L    K     +  
Sbjct: 594 SYRWLLWAATAVPEQRSIYATARDITERKEMERTLQDRIKQQMTVAEL 641



 Score = 38.9 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 27/253 (10%), Positives = 58/253 (22%), Gaps = 12/253 (4%)

Query: 85   FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144
            F +++     +   ++      G  A + +   +  +        N    + L    +W 
Sbjct: 946  FVYSLSGE--ILFWNKGAEAIYGWSAEEALSQNVYQLLYPEDSQENEVSLERLAPTGSWQ 1003

Query: 145  GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            G+  L  I      + +      +  +           +           A   R  +  
Sbjct: 1004 GE--LQQITQQKQIITVMSRWTLMKDQQGNPK--SILSVDTDITEAKQLEAQFLRAQRLE 1059

Query: 205  SHLHEIKKGHSSVEKEKYDIFSQQ-----SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
            S           +      I+          P       +   L +  A +   +  +  
Sbjct: 1060 SVGTLASGIAHDLNNILTPIYGVAQLLSMQLPDADDPIRQQLQLLKTSAKQGSRMVNQVL 1119

Query: 260  PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
                 +E         H I   +    Q F      +      L   N  +    +    
Sbjct: 1120 SFARGKEGDRAPLAIKHLIVELRNFATQTFPKSLTITANIPNDLRMVNADATH-LYQALM 1178

Query: 320  NLTPETVDKCPIP 332
            NL     D  P  
Sbjct: 1179 NLLVNARDAMPNG 1191


>gi|89099083|ref|ZP_01171962.1| two-component sensor histidine kinase [Bacillus sp. NRRL B-14911]
 gi|89086213|gb|EAR65335.1| two-component sensor histidine kinase [Bacillus sp. NRRL B-14911]
          Length = 590

 Score =  323 bits (829), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 87/364 (23%), Positives = 155/364 (42%), Gaps = 24/364 (6%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            +  E  QL SIL   +DG+   +R+G IL TN    +       +   +   +      
Sbjct: 247 ALSQEKEQLASILSGMADGVITFSRDGTILVTNPPAERFIQNWYYEQGEESTNIEAVP-- 304

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
            S +       +     Q  E    G       + +   +    F       + D++E +
Sbjct: 305 -SEVMKLFQRAVDTGKEQIGEMPIQGRI----WVIIVSPLYNNTFIRGAVAVLRDMTEER 359

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           Q                  + DF+A VSHE+RTP+  + G+SE I +   G   +    E
Sbjct: 360 QL--------------DKLRKDFIANVSHELRTPIAMMQGYSEAIVDDIAGT--DEEKKE 403

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
            A+ I      +  +VN+LLD++++E+G + L  + V L   +S      Q  + EK I 
Sbjct: 404 MASVIYDESLRMGRLVNELLDLARMEAGHIQLTLDRVELKPYISRIARKFQGLSKEKIIK 463

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           + + F+      + D   ++Q+  N++ NAI  TP  G + I+        +++ V D+G
Sbjct: 464 LESEFSITEDDFVFDPDRIEQVLTNLIDNAIRHTPEDGSVKITVKSEEKG-LMVEVSDSG 522

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
            G+   +L    + F +   ++     GTGLGL +AK ++DA+ G+  + S   +GT   
Sbjct: 523 SGIPEEDLPFVFERFYKADKARTRGRSGTGLGLAIAKNIIDAHKGQISVQSKLQQGTTFS 582

Query: 806 IIFP 809
            + P
Sbjct: 583 FVIP 586


>gi|187730817|ref|YP_001881876.1| aerobic respiration control sensor protein ArcB [Shigella boydii
           CDC 3083-94]
 gi|187427809|gb|ACD07083.1| aerobic respiration control sensor protein ArcB [Shigella boydii
           CDC 3083-94]
          Length = 778

 Score =  323 bits (829), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 86/438 (19%), Positives = 180/438 (41%), Gaps = 21/438 (4%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L +           L  +Q     +     I   +  +         ++ E
Sbjct: 81  EESRQRLSRLVQKLEEMRERDLSL-NVQLKDNIAQLNQEIAVREKAEAELQETFGQLKIE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             +    + ++E +   L S L+A+ D +   N +      NRA+  L G   + ++   
Sbjct: 140 IKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCY 554
                     + +     ++   ++  T E+        +    +R +    ++      
Sbjct: 200 PADVYSPEAAAKVIETDEKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGL 259

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+        +   E+ S  K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 260 MGFGRDITERKR-------YQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE 312

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     +Y   I  S   + +I ND++D+ K+E  K+ L  +PV     +++  +L
Sbjct: 313 LTA----EQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENL 368

Query: 675 VQLYANEKRILIRTSFANNIP---RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
             L A +K   +R +    +P   +++ D   ++QI  N++SNA+ FT  G Q+ +   +
Sbjct: 369 SALQAQQKG--LRFNLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQG-QVTVRVRY 425

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMG 790
              + +   V D+G+G+   EL+K    + Q+ +S   +   GTG+GL +++ +     G
Sbjct: 426 DEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGG 485

Query: 791 KFYIFSTPAKGTLIEIIF 808
              + S   KG+   +  
Sbjct: 486 DITVTSEQGKGSTFTLTI 503


>gi|323951271|gb|EGB47146.1| hsp90-like protein [Escherichia coli H252]
          Length = 778

 Score =  323 bits (829), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 86/438 (19%), Positives = 180/438 (41%), Gaps = 21/438 (4%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L +           L  +Q     +     I   +  +         ++ E
Sbjct: 81  EESRQRLSRLVQKLEEMRERDLSL-NVQLKDNIAQLNQEIAVREKAEAELQETFGQLKIE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             +    + ++E +   L S L+A+ D +   N +      NRA+  L G   + ++   
Sbjct: 140 IKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCY 554
                     + +     ++   ++  T E+        +    +R +    ++      
Sbjct: 200 PADVYSPEAAAKVIETDEKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGL 259

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+        +   E+ S  K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 260 MGFGRDITERKR-------YQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE 312

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     +Y   I  S   + +I ND++D+ K+E  K+ L  +PV     +++  +L
Sbjct: 313 LTA----EQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENL 368

Query: 675 VQLYANEKRILIRTSFANNIP---RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
             L A +K   +R +    +P   +++ D   ++QI  N++SNA+ FT  G Q+ +   +
Sbjct: 369 SALQAQQKG--LRFNLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQG-QVTVRVRY 425

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMG 790
              + +   V D+G+G+   EL+K    + Q+ +S   +   GTG+GL +++ +     G
Sbjct: 426 DEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGG 485

Query: 791 KFYIFSTPAKGTLIEIIF 808
              + S   KG+   +  
Sbjct: 486 DITVTSEQGKGSTFTLTI 503


>gi|253699829|ref|YP_003021018.1| multi-sensor hybrid histidine kinase [Geobacter sp. M21]
 gi|251774679|gb|ACT17260.1| multi-sensor hybrid histidine kinase [Geobacter sp. M21]
          Length = 962

 Score =  323 bits (829), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 108/546 (19%), Positives = 200/546 (36%), Gaps = 60/546 (10%)

Query: 313 AYFDEGENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
              +         +   PIP  ++   G +   + S+  LT Y+  D   +   L   + 
Sbjct: 258 RSLELSREQFRRAIADAPIPVIMHAEDGKVLQVSGSWTELTGYELEDIPTLEAWLDRAVQ 317

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
            P   D +A +  +              +  +  +  +            +         
Sbjct: 318 GP---DGDAARAAVSALCTGNRQNIRWDMPILTRDGRSRYW-NISASSPGSLQDGRRFVV 373

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATS---------DGI----------------- 465
            +  +  + R ++  ++   ++L  +    S           +                 
Sbjct: 374 CMAVDITERRESEAALQRGNLRLDLLASTASRLLESDAPQQLVDELCQKVMSYLSCDTYF 433

Query: 466 -AIINREGIILSTN-------RAVSKL----FGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
             +++ E   L  N        +   L    +G  +     +     + +N P V +   
Sbjct: 434 NFLVDEEAGCLRLNSCAGISAESAESLQYLEYGVAICGCAARDACRIVAENIPEVPDPRT 493

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS---LTMHDIS---EWKQE 567
             + SL +        +   +    LS     +K       S        +S   E K  
Sbjct: 494 ELVKSLGITAYACHPLMSHGRVLGTLSFGTRTRKAFSEDDLSLMKAVADQVSIAMERKTT 553

Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
           + KL  AK+ AE  S  KS FLA +SHE+RTP+T ++G    + +         +  +Y 
Sbjct: 554 EEKLQQAKQAAEAASRTKSQFLANMSHELRTPMTGVLG----MLDLALQSTSELQQSDYI 609

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
               RSG  +L I+ND+LD+SK+E+GK +L  +P SL   V+EA  +    A  K I + 
Sbjct: 610 RTAYRSGRSLLQILNDILDLSKVEAGKFSLDQKPFSLRSCVTEAADIAAPEAKRKGIELE 669

Query: 688 TSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-----VILRV 741
              A ++P  ++ D   ++Q+  N++ NA+ FT  G ++ +              +  RV
Sbjct: 670 LDLAQDLPWHVVGDQVRLRQVLTNLVGNAVKFTERG-RVTVQVEVADKTAEAELLLRFRV 728

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            DTG+G+   +     + F Q+ +S      GTGLGL ++K +V    G+    S    G
Sbjct: 729 SDTGIGIPQDKRHLLFQAFSQVDDSNTRNYGGTGLGLAISKEIVQRMGGEIGFESGEGVG 788

Query: 802 TLIEII 807
           +     
Sbjct: 789 STFTFT 794


>gi|85711698|ref|ZP_01042755.1| Hybrid sensor histidine kinase [Idiomarina baltica OS145]
 gi|85694558|gb|EAQ32499.1| Hybrid sensor histidine kinase [Idiomarina baltica OS145]
          Length = 655

 Score =  323 bits (829), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 105/489 (21%), Positives = 209/489 (42%), Gaps = 35/489 (7%)

Query: 341 LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400
           + Y + +   +  Y     I+       L+    L      + V   +S  T    +   
Sbjct: 41  VRYVSDNVESIFGYNKQQFIDREVHFKFLIHEDDLPR--VNEEVKRLKSGETGFRITHND 98

Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
           + I+      + ++     K +         G   +  + +  + K+E E  +L  +L+A
Sbjct: 99  YRIKHKNGRHVWVSDTTIIKMDTDDGVPLLFGYLIDITERKELEIKLETERNRLQLLLDA 158

Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV--FLEQNTPSVMNHYLTEILS 518
           T  G    N +  + S N   +++FG+  E+I + P++    L  +    +   + + L 
Sbjct: 159 TRLGTWEWNPQSNLTSFNDRWAQIFGWSREEIEQSPYSWSSRLHPDDYDRVWRAVKDHL- 217

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-----CYSLTMHDISEWKQEKNKLSH 573
             +    E       ++   + +    + +          Y+ T+ D++E KQ +     
Sbjct: 218 DGITPFYESQHRIRHRDGHYVYVLDRGRVIERDEHGKATRYAGTVTDVTEQKQAEI---- 273

Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
               A + +S K+ FLA +SHE+RTPL  I+G   V++N            +    +  S
Sbjct: 274 ---NARRAASAKNVFLANMSHEVRTPLHGILGLVSVLENTALDT----HQHQLLMTVKES 326

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693
           G+ +L ++NDLLD+++ E G++ L+ + + L   +    S+ +    EK +      +  
Sbjct: 327 GDHLLQMLNDLLDLTRSEEGQLKLNKDVLELARILQHIESMYRAPIEEKGVKFIIHHSQV 386

Query: 694 IPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIS----------TTHTSNEEVILRVR 742
           +P  I +D   + QI  N+L+NA+ FT  G  I++S          T   +  E++++VR
Sbjct: 387 LPERIFSDRARLIQILTNLLNNAVKFTEQG-TIMLSIDWSVDPATTTQTQAQGELLIKVR 445

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG G+   + ++  + F Q       +  G+GLGL + + +V    G+  + S P +GT
Sbjct: 446 DTGAGI--RDTQRIWQLFEQEHQGLSKKQSGSGLGLAIVRNLVQLLDGEIEVDSEPNRGT 503

Query: 803 LIEIIFPLY 811
              +  P+Y
Sbjct: 504 CFSLRLPMY 512



 Score = 42.7 bits (99), Expect = 0.29,   Method: Composition-based stats.
 Identities = 28/262 (10%), Positives = 58/262 (22%), Gaps = 12/262 (4%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKM--IGMRLCDVSDILHIDPN-NHIGDLLKRQNT 142
           TW  +    L   ++   +  G    ++                D     + D L     
Sbjct: 163 TWEWNPQSNLTSFNDRWAQIFGWSREEIEQSPYSWSSRLHPDDYDRVWRAVKDHLDGITP 222

Query: 143 WYG-KTTLWPIEGTNLYVPIDLAALPI-YSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
           +Y  +  +   +G   YV +      I    + + + + G   V             +R 
Sbjct: 223 FYESQHRIRHRDGH--YVYVLDRGRVIERDEHGKATRYAG--TVTDVTEQKQAEINARRA 278

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK-Y 259
               +                            L        +T   +    +       
Sbjct: 279 ASAKNVFLANMSHEVRTPLHGILGLVSVLENTALDTHQHQLLMTVKESGDHLLQMLNDLL 338

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
            L  SEE  L   +D   +       +  +          F  + H +       F +  
Sbjct: 339 DLTRSEEGQLKLNKDVLELARILQHIESMYRAPIEEKGVKF--IIHHSQVLPERIFSDRA 396

Query: 320 NLTPETVDKCPIPFFVYSHGNL 341
            L     +           G +
Sbjct: 397 RLIQILTNLLNNAVKFTEQGTI 418


>gi|315195596|gb|EFU25983.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus CGS00]
          Length = 554

 Score =  323 bits (829), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 86/398 (21%), Positives = 166/398 (41%), Gaps = 33/398 (8%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEI--EVMQLCSILEATSDGIAIINREGIIL 475
                          +   D+  R+ K   E   +  +L + +E     I +I+R G I+
Sbjct: 178 IRVPESNVVETKALFVSTNDLARRLQKLNNEQKIQSNRLKTTIENIPSAILMIDRNGKIV 237

Query: 476 STNRAVSKLFGYPVEDILRKPFTVF-LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
             N+A  + F                      + +   + E   ++     +     +  
Sbjct: 238 VANKAYYEQFNIS------HNIEQVGYHGYVNTEIEQLILESFKVEKPIYEQLEVAINQV 291

Query: 535 EEKLLSLRIIIKKLPFS---SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
             K   +  +              + MHDI+  KQ +              + + +F+A 
Sbjct: 292 HAKYFDISCVPILTRSQKSLQGILVVMHDITNLKQLE--------------NLRREFVAN 337

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKI 650
           VSHE++TP+T+I GF+E + +   G   +   ++ + N I +  N +  +V DLLD+S I
Sbjct: 338 VSHELKTPITSIKGFAETLID---GAKNDAESLDMFLNIILKESNRIESLVTDLLDLSHI 394

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710
           E     L  + ++L +     I  +   AN+K I I T    ++  + A    + Q+  N
Sbjct: 395 E-QHTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTEIEKDVI-VKAQESKIAQVITN 452

Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           +L+NAI+++   G I +   +  +  VI  V+D G+G+   + ++  + F ++  ++   
Sbjct: 453 LLTNAINYSYEDGDINVRV-YRDDFRVIFEVQDFGIGIKLEDQQRIFERFYRVDKARSRD 511

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
             GTGLGL + K +V A+ G   + S   KG+  ++I 
Sbjct: 512 SGGTGLGLSITKHIVKAHQGNIEVNSQVGKGSTFKVIL 549


>gi|154252152|ref|YP_001412976.1| multi-sensor signal transduction histidine kinase [Parvibaculum
           lavamentivorans DS-1]
 gi|154156102|gb|ABS63319.1| multi-sensor signal transduction histidine kinase [Parvibaculum
           lavamentivorans DS-1]
          Length = 798

 Score =  323 bits (828), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 120/555 (21%), Positives = 232/555 (41%), Gaps = 59/555 (10%)

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSVDDIEI 362
           +       +A     E+     V+       V     +  YA+P+   +    S+D +  
Sbjct: 244 ARLRAEEANAQLQRREHHFRALVENAFDVVLVTDEQAIIRYASPAAEKI--GLSIDALIG 301

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
              L  L    K      + P      +      +  L   + +  +             
Sbjct: 302 MNSLDFLTKEQKEELLKDVAP-----GNGASRVLTYELLVPRQDDRSIWIEAT--LTNLL 354

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI---LE-----------------ATS 462
                        +  + +  + +   +   L ++   +E                    
Sbjct: 355 HDENVRGYVVNLRDITERKRAETEQRSQFGVLRALATGVELGEVMSRLALGSEEAHPGAR 414

Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522
             + +++ +  +++   A   L     E +    F    + +    M     +I++ DL+
Sbjct: 415 AAVFLLDAKEDLITC--AAPHLPADFPEWVGG--FWQSQKDHDFGRMALAGHKIVATDLQ 470

Query: 523 QTLEKITLG---STKEEKLLSLRIIIKKLPFSSCYSLTM-----------HD-------- 560
           +     ++           +  + I+ +                       D        
Sbjct: 471 EEHHGESISSYMRGAGISTVWFKPILSRSGKVIGAFAMYFAEARTPGKWEEDYVMGAAHL 530

Query: 561 ---ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
                E ++ +  L  A + AE  +  K+ FLA +SHE+RTPL AIIGFSE++  + FGP
Sbjct: 531 ASIAIERRRAEEGLRQATETAEMANRAKTKFLANMSHELRTPLNAIIGFSEIMSQEMFGP 590

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
           LG+ RY EY N I  SG  +L++++D+LDISKIE+G+  L  + + +   +  ++ +++ 
Sbjct: 591 LGSDRYREYTNDIHGSGRHLLNVIDDILDISKIEAGRYVLEEDEIDMAHVLKWSVEMMRA 650

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737
              EKR  +       IP + AD R+++QI LN+LSNA  FTP+ G+I ++ +     ++
Sbjct: 651 RTLEKRQNVNLHLPEAIPNVRADQRAMRQIMLNLLSNASKFTPAEGRIDLNVSRNDAGDL 710

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
           ++ V D+G+G+   +L++ ++PFGQ+ ++   +  GTGLGLP+ K++++ + G F + ST
Sbjct: 711 MVSVADSGIGIPRNKLDEVLEPFGQVDDTSARQHGGTGLGLPITKSLIEMHGGSFTLEST 770

Query: 798 PAKGTLIEIIFPLYD 812
              GT   +IFP + 
Sbjct: 771 LGAGTTATMIFPAHR 785



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 18/158 (11%), Positives = 57/158 (36%), Gaps = 11/158 (6%)

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRK-----MEIEVMQLCSILEATSDGIAIINREGIIL 475
             +  + +   G   +  +    + +     ++       +++E   D + + + + II 
Sbjct: 224 RFRNADLIRDIGKARDLSEEARLRAEEANAQLQRREHHFRALVENAFDVVLVTDEQAIIR 283

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
             + A  K+ G  ++ ++      FL +     +   +         + L    L   ++
Sbjct: 284 YASPAAEKI-GLSIDALIGMNSLDFLTKEQKEELLKDV--APGNGASRVLTYELLVPRQD 340

Query: 536 EKLLSLRIIIKKLPFS---SCYSLTMHDISEWKQEKNK 570
           ++ + +   +  L        Y + + DI+E K+ + +
Sbjct: 341 DRSIWIEATLTNLLHDENVRGYVVNLRDITERKRAETE 378



 Score = 37.7 bits (86), Expect = 7.5,   Method: Composition-based stats.
 Identities = 44/387 (11%), Positives = 84/387 (21%), Gaps = 33/387 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL-------HIDPNNHIGDLL---- 137
            D    ++  S    + IG     +IGM   D             + P N    +L    
Sbjct: 276 TDEQAIIRYASPA-AEKIGLSIDALIGMNSLDFLTKEQKEELLKDVAPGNGASRVLTYEL 334

Query: 138 -----KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFR-GFGIVHVNRVDN 191
                  ++ W   T    +   N+   + +    I  R R  +  R  FG++       
Sbjct: 335 LVPRQDDRSIWIEATLTNLLHDENVRGYV-VNLRDITERKRAETEQRSQFGVLRALATGV 393

Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD 251
           +   +  RL       H   +    +   K D+ +  +P         V    +     D
Sbjct: 394 ELGEVMSRLALGSEEAHPGARAAVFLLDAKEDLITCAAPHLPADFPEWVGGFWQSQKDHD 453

Query: 252 DVLKTEKYP-----LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
                          L  E              ++    K               Y +  
Sbjct: 454 FGRMALAGHKIVATDLQEEHHGESISSYMRGAGISTVWFKPILSRSGKVIGAFAMYFAEA 513

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
             P         E+          I                   +        +      
Sbjct: 514 RTPGKW-----EEDYVMGAAHLASIAIERRRAEEGLRQATETAEMANRAKTKFLANMSHE 568

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
                   +  +  +   M         +   R +T   +      +  I         E
Sbjct: 569 LRTPLNAIIGFSEIMSQEMF----GPLGSDRYREYTNDIHGSGRHLLNVIDDILDISKIE 624

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQ 453
                  E E     + K  +E+   +
Sbjct: 625 AGRYVLEEDEIDMAHVLKWSVEMMRAR 651


>gi|170741718|ref|YP_001770373.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
 gi|168195992|gb|ACA17939.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
          Length = 984

 Score =  323 bits (828), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 113/648 (17%), Positives = 225/648 (34%), Gaps = 21/648 (3%)

Query: 176 SGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH--EIKKGHSSVEKEKYDIFSQQSPPPH 233
           +G RG+ +       +   A    +D +   L   +      +  +         +    
Sbjct: 73  TGLRGYILTGDGAYLDPYAAALTHIDPELDRLDGFDRDPDTRARRRRLIADQRAYAARAV 132

Query: 234 LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293
              + +            +  +        +         D   I   +  +      L 
Sbjct: 133 AARREQGPEAASALVRSGEGKRIMDALRTLTAAVQDRAVADLDRIAARERLRSPLLQVLV 192

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLT 352
             S  +   L  R              L    ++  P+   F+     + + N +   ++
Sbjct: 193 LASALAAAGLLARLAILRRREGRRTAALLAGVLENAPVGLGFLDRDLTIRHMNRALESMS 252

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE-NSL 411
           +      +            P L D  A K                 + T          
Sbjct: 253 ERGLGTGVGEPIWA----LLPSLRDALAPKLAAARDEGLVTANVEVGVPTPSAPGSVRYF 308

Query: 412 AMTFIPFE--KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469
            M+F P      ++         +  +    ++++ +      +  S+ EATS  +    
Sbjct: 309 QMSFFPLRRDVDDRAARAEGVGLVMSDVTLRKLSEARTRESEERFRSLTEATSAIVWRTT 368

Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
            EG         ++  G   E+     F   +     +       + ++           
Sbjct: 369 PEGTFAQVTSEWTRFTGQTPEEAAGLGFLDAVHPEDRAATRAAWEQAVAT--HALYAIEH 426

Query: 530 LGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
                +     + +    +         +     D +  K+ +  L  A++ AE+ ++ K
Sbjct: 427 RLRRHDGIYRHMEVRAVPILEKDGRVREWVGAHADTTARKEAELALEAAREAAEEANAAK 486

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
           S FLA +SHE+RTPL+A+IG++E+++ +    LG    +     I+ +   +L ++ND+L
Sbjct: 487 SQFLANMSHELRTPLSAVIGYAEMLQEE-MEDLGASALLPDMRKIEANARHLLGLINDVL 545

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
           DISKIE+ +M ++ E   +   + +  + V     +K   +    A  + R   D+  ++
Sbjct: 546 DISKIEAERMEVYAEDFDVAATLQDVGATVGSLIAKKDNALVLDLAEGLGRAHTDVTKLR 605

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR---VRDTGVGMTNYELEKAMKPFGQ 762
           Q  +N+LSNA  FT  GG+I++S      +        V DTG+GM+  +  +  + F Q
Sbjct: 606 QCLINLLSNAAKFT-EGGRIVLSAERLRRDGRDRLRFRVADTGIGMSAEQQARLFERFTQ 664

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
              S   R  GTGLGL + +A V+   G   + S   +GT   I  P+
Sbjct: 665 ADASTTRRFGGTGLGLAITRAFVEMLGGAIAVESRAGEGTTFTIELPV 712



 Score = 57.7 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 44/512 (8%), Positives = 115/512 (22%), Gaps = 32/512 (6%)

Query: 55  TDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI 114
           +D     +S     +SE  F       +    W     G   +++ E  +  G    +  
Sbjct: 334 SDVTLRKLSEARTRESEERFRSLTEATSA-IVWRTTPEGTFAQVTSEWTRFTGQTPEEAA 392

Query: 115 GMRLCDVSDILHIDPNNHIGD-LLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNR 173
           G+   D              +  +     +  +  L   +G  +Y  +++ A+PI  ++ 
Sbjct: 393 GLGFLDAVHPEDRAATRAAWEQAVATHALYAIEHRLRRHDG--IYRHMEVRAVPILEKDG 450

Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH 233
                   G         +     +   +     +  K    +    +            
Sbjct: 451 RVR--EWVGAHADTTARKEAELALEAAREAAEEANAAKSQFLANMSHELRTPLSAVIGYA 508

Query: 234 LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293
             ++ ++  L       D          L    + + +        +  Y +        
Sbjct: 509 EMLQEEMEDLGASALLPDMRKIEANARHLLGLINDVLDISKIEAERMEVYAEDFDVAATL 568

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPE--------TVDKCPIPFFVYSHGNLFYAN 345
            +   +   L  +   +L     EG               ++           G +  + 
Sbjct: 569 QDVGATVGSLIAKKDNALVLDLAEGLGRAHTDVTKLRQCLINLLSNAAKFTEGGRIVLSA 628

Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405
                  + +    +   G   +     +L +          R         A       
Sbjct: 629 ERLRRDGRDRLRFRVADTGIGMSAEQQARLFERFTQADASTTRRFGGTGLGLAITRAFVE 688

Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465
               ++A+     E      E   +   E E  +   +                A  D +
Sbjct: 689 MLGGAIAVESRAGEGTTFTIELPVRYRAEAEAGEDEADAAAPAPAAEAARE---AGGDLV 745

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
            +I+ +        A   L        LR+                    +      + +
Sbjct: 746 LVIDDD-------PATRDLL----ARFLRRDGFRVAAAPDGRAGLDQARALR----PRVI 790

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT 557
                    +   +   +       ++   + 
Sbjct: 791 LLDVTMPRMDGWEVLRALRADPDLAATPVIMV 822



 Score = 55.4 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/232 (6%), Positives = 49/232 (21%), Gaps = 7/232 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D    ++ ++  L           +G  +  +   L       +               
Sbjct: 235 LDRDLTIRHMNRALESMSERGLGTGVGEPIWALLPSLRDALAPKLAAARDEGLVTANVEV 294

Query: 149 LWPI-EGTNLYVPIDLAALPI-YSRNREFSGFRGFGIV-HVNRVDNDPRALGKRLDKKFS 205
             P            ++  P+    +   +   G G+V     +     A  +  +++F 
Sbjct: 295 GVPTPSAPGSVRYFQMSFFPLRRDVDDRAARAEGVGLVMSDVTLRKLSEARTRESEERFR 354

Query: 206 HLHEIKKGHSSVEKEKYDIF----SQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
            L E           +                   +       +    +D       +  
Sbjct: 355 SLTEATSAIVWRTTPEGTFAQVTSEWTRFTGQTPEEAAGLGFLDAVHPEDRAATRAAWEQ 414

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
             +  +    +      +      +     +        E++      +   
Sbjct: 415 AVATHALYAIEHRLRRHDGIYRHMEVRAVPILEKDGRVREWVGAHADTTARK 466


>gi|26249796|ref|NP_755836.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           CFT073]
 gi|110643451|ref|YP_671181.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           536]
 gi|191174415|ref|ZP_03035918.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           F11]
 gi|227887931|ref|ZP_04005736.1| histidine kinase [Escherichia coli 83972]
 gi|300979941|ref|ZP_07174793.1| PAS domain S-box [Escherichia coli MS 200-1]
 gi|300990940|ref|ZP_07179392.1| PAS domain S-box protein [Escherichia coli MS 45-1]
 gi|301047943|ref|ZP_07194988.1| PAS domain S-box [Escherichia coli MS 185-1]
 gi|26110224|gb|AAN82410.1|AE016767_170 Aerobic respiration control sensor protein arcB [Escherichia coli
           CFT073]
 gi|110345043|gb|ABG71280.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           536]
 gi|190905305|gb|EDV64941.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           F11]
 gi|227835327|gb|EEJ45793.1| histidine kinase [Escherichia coli 83972]
 gi|300300175|gb|EFJ56560.1| PAS domain S-box [Escherichia coli MS 185-1]
 gi|300307876|gb|EFJ62396.1| PAS domain S-box [Escherichia coli MS 200-1]
 gi|300407016|gb|EFJ90554.1| PAS domain S-box protein [Escherichia coli MS 45-1]
 gi|307555303|gb|ADN48078.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           ABU 83972]
 gi|315294870|gb|EFU54209.1| PAS domain S-box [Escherichia coli MS 153-1]
 gi|323189169|gb|EFZ74453.1| aerobic respiration control sensor protein arcB [Escherichia coli
           RN587/1]
 gi|324012146|gb|EGB81365.1| PAS domain S-box [Escherichia coli MS 60-1]
          Length = 778

 Score =  323 bits (828), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 86/438 (19%), Positives = 180/438 (41%), Gaps = 21/438 (4%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L +           L  +Q     +     I   +  +         ++ E
Sbjct: 81  EESRQRLSRLVQKLEEMRERDLSL-NVQLKDNIAQLNQEIAVREKAEAELQETFGQLKIE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             +    + ++E +   L S L+A+ D +   N +      NRA+  L G   + ++   
Sbjct: 140 IKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCY 554
                     + +     ++   ++  T E+        +    +R +    ++      
Sbjct: 200 PADVYSPEAAAKVIETDEKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGL 259

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+        +   E+ S  K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 260 MGFGRDITERKR-------YQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE 312

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     +Y   I  S   + +I ND++D+ K+E  K+ L  +PV     +++  +L
Sbjct: 313 LTA----EQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENL 368

Query: 675 VQLYANEKRILIRTSFANNIP---RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
             L A +K   +R +    +P   +++ D   ++QI  N++SNA+ FT  G Q+ +   +
Sbjct: 369 SALQAQQKG--LRFNLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQG-QVTVRVRY 425

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMG 790
              + +   V D+G+G+   EL+K    + Q+ +S   +   GTG+GL +++ +     G
Sbjct: 426 DEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGG 485

Query: 791 KFYIFSTPAKGTLIEIIF 808
              + S   KG+   +  
Sbjct: 486 DITVTSEQGKGSTFTLTI 503


>gi|227823950|ref|YP_002827923.1| sensor protein [Sinorhizobium fredii NGR234]
 gi|227342952|gb|ACP27170.1| sensor protein [Sinorhizobium fredii NGR234]
          Length = 917

 Score =  323 bits (828), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 126/645 (19%), Positives = 236/645 (36%), Gaps = 43/645 (6%)

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKN-KVSSLTEYYAHKDDVLKTEKYPLLT 263
             L  ++   +   K    + +         +    + SL          L      +  
Sbjct: 6   ERLRPVEAVPTPARKLAGRLANLPISARVATLTAAGLISLILSSVFLTQALHRSAERMAD 65

Query: 264 SEE---SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
           ++E    +             +Y       +L  NS+ + E    R    L        +
Sbjct: 66  TQELFDRAASAAAAHVAFGDLRYWLTDLSVSLLMNSQRNAEQARERLQIQLERLAKHSPD 125

Query: 321 LTPETVDKCP--IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
              E   +    +   + +  +    N         ++             L     +D 
Sbjct: 126 AVREIRTEIDAYVATALQATESYTADNRILGNTLLAEARTHSGHVDQNLNRLVEQVKADA 185

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA----------------- 421
            A +  ++ ++ +T   A+  +  +         +                         
Sbjct: 186 EAARNEVVAQAQKTATTAAILVGGVVLVGSLLTLLVLRSIVGPLRRLNRVIGDLTEGRYD 245

Query: 422 ---------NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG 472
                    +        +  +   ++ +  + + E +   + + LEA SDG  + + + 
Sbjct: 246 VEIPQEGGDDFGAMAKTLSLFQQNAIEKKKLEDEAERQRRTIAAALEAISDGFVLYDPDD 305

Query: 473 IILSTNRAVSKLF-GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL--DLRQTLEKIT 529
            IL  N    ++F  +   ++  K F   LEQN          +      + R  L +  
Sbjct: 306 KILVANSRYCEIFPSHKPNELRGKSFREILEQNLAKGKVDLEGKAPEEWIEDRLRLHRDP 365

Query: 530 LGSTKEEKL--LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
            G   E +     +RI  +K+P          DI+E KQ + +L  AK  AE  S  KS 
Sbjct: 366 AGLADERRFDDKWVRITKRKIPD-GGTVAVYTDITELKQRQAELERAKSNAEAASEAKSR 424

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           FLA +SHE+RTPL AIIG+SE++  +      N    +    I  +G  +L ++ND+LD+
Sbjct: 425 FLASMSHELRTPLNAIIGYSEMLIEEAHDHGENELVPD-LEKIASAGRHLLALINDILDL 483

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707
           SKIE+ KM +  E   + + + +  + V     + R      F  ++  + +D   ++Q 
Sbjct: 484 SKIEANKMEVFLESFGVAQLLGDVSATVAPLMAKNRNAFVQEFDGDLGEMHSDQTKLRQN 543

Query: 708 ALNILSNAIHFTPSGGQIIISTTHT---SNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764
             N+LSNA  FT +GG++ +S         + ++ +V DTG+GMT  +L++    F Q  
Sbjct: 544 LFNLLSNAAKFT-TGGRVTLSARREGRADGDWLVFKVSDTGIGMTPEQLDRLFNAFTQAD 602

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            S      GTGLGL + ++      G   + S   KG++  +  P
Sbjct: 603 ASTTRNYGGTGLGLSITRSFSRMIGGIVNVESEAGKGSVFTMEVP 647


>gi|281354910|ref|ZP_06241404.1| multi-sensor hybrid histidine kinase [Victivallis vadensis ATCC
            BAA-548]
 gi|281317790|gb|EFB01810.1| multi-sensor hybrid histidine kinase [Victivallis vadensis ATCC
            BAA-548]
          Length = 1480

 Score =  323 bits (828), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 104/620 (16%), Positives = 219/620 (35%), Gaps = 35/620 (5%)

Query: 214  HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE 273
             S     +  +  +            +   ++    +D  ++      +   ++    + 
Sbjct: 721  PSWCPHARVRLSGRSEQVDFTLKGRNLHLTSQPIFDRDGKIRHIFEAAVDMTDAQRQNET 780

Query: 274  DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF 333
                 N    +       ++ +   +    +   +           +   E +       
Sbjct: 781  LAENRNRLLESNNLLKICIEQDETVNACMETLVLNSDFRDSLQHIVSRIGERLGSDTCGV 840

Query: 334  FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS----------------TLLDAPKLSD 377
            F    G   +A   + +         +                        L       +
Sbjct: 841  FRAVDGKEKFAVEEYWVAGGLSPKLMVRELVRRDYPACFEELFHGRMLKVALKGEDGEEE 900

Query: 378  NNAIKPVMLYRSDR---TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
                + +  Y   +   +            W                           I 
Sbjct: 901  TPVQREMRNYLRGQKFSSIFCIGVWCRGEYWGHLGVEWSDAGSMFNEVGERMVRAAARII 960

Query: 435  PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
               ++  + ++ +     +   +       + + + +  ++  N A  KL G     IL 
Sbjct: 961  EILIERELGRKTLVRSESEKTLVFNMLDIPLILFDAQNRVVRVNAAAEKLAGRSRAKILA 1020

Query: 495  KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554
            +P      +      +  +   L   L Q  E   LG T        ++  + L      
Sbjct: 1021 EPCYRSFCRREAPPPDCMVRLTLQTGLPQQGEAQILGKT-------YQVASRPLFEEGKL 1073

Query: 555  SLTMH---DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
               +    D++E +Q+  KL  A + A+     KS FLA +SHEIRTPL A+IGFSE+++
Sbjct: 1074 VNVLQSFVDMTEARQQSEKLKAAMESAQAADRAKSFFLATMSHEIRTPLNAVIGFSELLQ 1133

Query: 612  NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
            NQ   P      +EY + I+ +G  +L ++ND+LD+SKIE+G++ +  E +       E 
Sbjct: 1134 NQSLSP---EEQVEYLHSINLAGTALLRLINDILDLSKIEAGEVRIVAEKIDFTALCGEI 1190

Query: 672  ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG---QIIIS 728
             ++      EK++  +    + +P +  D + ++Q+ LN++ NA+ FT  GG   ++   
Sbjct: 1191 NAIFTQKVMEKKLYFKLEVPSGLPFLWLDGQQMRQVLLNLVGNAVKFTGEGGVTLKVEFR 1250

Query: 729  TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                    + + + DTG+G++    +K  +PF Q    +    EGTGLGL +++ ++   
Sbjct: 1251 REGPEAGTLEIAIIDTGIGISREYQQKVFQPFIQDNAVRDRAYEGTGLGLSISQRLIRKM 1310

Query: 789  MGKFYIFSTPAKGTLIEIIF 808
             G+  + S P +G+   ++ 
Sbjct: 1311 DGRLLLESEPGRGSCFTVVL 1330



 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 54/446 (12%), Positives = 113/446 (25%), Gaps = 34/446 (7%)

Query: 157 LYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSS 216
             +    A        REF          +    +        L++     +       +
Sbjct: 70  YMIRFRAAIHRRRQDEREFRR-------RIYLERDRSNQALLTLEQTAKMANLAYFSCRA 122

Query: 217 VEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFH 276
              E           P    K  V      Y       +     L       +       
Sbjct: 123 DGSELTLSAGANRNWPLEDSKA-VPPSQWVYPEDLASFEASWQELTQGRSPEIEISFRAG 181

Query: 277 TINLNQYTKKQYFGTLQNNSKESFEY-LSHRNHPSLSAYFDEGENLTPETV-DKCPIPFF 334
                 +  +     +    +      +                +   + + D  P P F
Sbjct: 182 KGGARYFRLQAGARGVAEEGERRIVGCIQEVTDLRERERKFRDTDELLKIMADTLPCPIF 241

Query: 335 V---YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR 391
           +           +N S   L      +    AG     +  P              ++DR
Sbjct: 242 IKDASDGFRYLLSNRSHAALLNRTPEEV---AGRTDAEIFGPGH-----EYVERFRKADR 293

Query: 392 TCIAASARLHTIQW--NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449
             + A   L +++   + +  +           Q        G+  E  +    K++ E 
Sbjct: 294 EALEAGRNLESVERVVDAQGKVHYLHGIKGIVTQSGGRKLLIGMATEVTELEETKQRAEE 353

Query: 450 EVMQLCSILEATSDGIAIINR--EGIILSTNRAVSKLFGYPVEDILRKP-FTVFLEQNTP 506
               L +IL+    GI + +   +   +  NRA+S+  G PVE +L K  F   +     
Sbjct: 354 SKRLLQAILDHVPVGILLKDPAADYRYVLWNRALSEFSGVPVEQVLGKNDFEANIYPGCA 413

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY-SLTMHDISEWK 565
                   ++++    +   +          +     I  +L     +      DIS   
Sbjct: 414 EQFRREDAKVVATGKAEVFVEDLQTVRDTRVVYHTHKIPLELEPGKTFLLGLCVDISREW 473

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLAR 591
           + +N+         +     +DF+  
Sbjct: 474 KLENE-------QNRMIDALNDFVRN 492



 Score = 65.0 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 41/560 (7%), Positives = 131/560 (23%), Gaps = 82/560 (14%)

Query: 94  YLKEISEELPKTIGNYAFKMIGMRLCDV---SDILHIDPNNHIGDLLKRQNTWYGKTTLW 150
                +      +     ++ G    ++                + L+          + 
Sbjct: 250 RYLLSNRSHAALLNRTPEEVAGRTDAEIFGPGHEYVERFRKADREALEAGRNLESVERVV 309

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
             +G  ++    +  +   S  R+       G+        + +   +   +    + + 
Sbjct: 310 DAQG-KVHYLHGIKGIVTQSGGRKLL----IGMATEVTELEETKQRAEESKRLLQAILDH 364

Query: 211 KKGHSSVEKEKYDIFSQ----QSPPPHLRMKNKVSS---LTEYYAHKDDVLKTEKYPLLT 263
                 ++    D                   +V                    +   + 
Sbjct: 365 VPVGILLKDPAADYRYVLWNRALSEFSGVPVEQVLGKNDFEANIYPGCAEQFRREDAKVV 424

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
           +   +    ED  T+   +     +   L+    ++F      +        +E   +  
Sbjct: 425 ATGKAEVFVEDLQTVRDTRVVYHTHKIPLELEPGKTFLLGLCVDISREWKLENEQNRMID 484

Query: 324 ETVDKCPIPFFVYS--------HGNLFYANPSFLLLTKYKSVD----------------- 358
              D       +          +      N     + + +  D                 
Sbjct: 485 ALNDFVRNEQMLNRCLKTITVENDFETAVNEILKRVGENRGADRCFIFRYSDNYRVGDNC 544

Query: 359 ------------------DIEIAGGLSTLLDAPKLSD-----NNAIKPVMLYRSDRTCIA 395
                             ++E    L  L+   ++               L         
Sbjct: 545 FEWVREGIAPQKRDLRDFEVERVQKLHRLIVERRIIAVNDLAQEPEIREELAAWLGKEPD 604

Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQF-----PENMPQNGIEPEDVDTRINKRKMEIE 450
             + L +          +  + F +          E +   G        R  + ++  +
Sbjct: 605 VKSLLISEIREGGQLWGVFGLDFVRERHAITAADRETLRSAGNLFMLARERQRQMELVAD 664

Query: 451 VMQLC-SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
            + L   ++E     +AI + +  I+S N A ++    P+ +++ K     L        
Sbjct: 665 TVALQKQLVENIDIPLAIFDLDYNIISINSAAAE--DVPIGELIGKKCYSSLCGCAEPPS 722

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM----HDISEWK 565
                 +      + ++    G         L +  + +         +     D+++ +
Sbjct: 723 WCPHARVRLSGRSEQVDFTLKGRN-------LHLTSQPIFDRDGKIRHIFEAAVDMTDAQ 775

Query: 566 QEKNKLSHAKKIAEKESSHK 585
           ++   L+  +    + ++  
Sbjct: 776 RQNETLAENRNRLLESNNLL 795


>gi|300867967|ref|ZP_07112606.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300333988|emb|CBN57784.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 1102

 Score =  323 bits (828), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 120/679 (17%), Positives = 243/679 (35%), Gaps = 66/679 (9%)

Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK--VSSLTEY 246
                    +  +       E       +   +                +   +   T  
Sbjct: 150 DRQLLEDKLRSSEAAIRVFFEAMNDIVLLIDAEDFSIKVAPTNSTRFYPDDTDILGQTIE 209

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
               ++    +    L  +   +   E     +  +           + +  ++      
Sbjct: 210 QFFGENAEIFQSQIRLALDTQQIVNFEYSLLTSQGEVWFIASITPT-SENTVAWVGRDIS 268

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPF--FVYSHG-NLFYANPSFLLLTKYKSVDDIEIA 363
           +   + A   + E      VD  P      +++    + + + +   +  Y++ + I   
Sbjct: 269 DRKQVEAALRQSEERFRSLVDNIPGAIYRCIFNSDVRVEFFSDAVEEIVGYQASEFIHDR 328

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
               T +  P+  +      + + +S             I     +   +         Q
Sbjct: 329 VRSWTSIVHPQDREMVK---LTIQKSLEIRHPFVLEYRVI-NANGSIRWVYDKGQGCFAQ 384

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS---------DGI-AII----- 468
               +  +G   +  D +  +  ++    ++ S+L   S           I   +     
Sbjct: 385 DGSLLWIDGAIFDISDRKQQEETLQ-RRAKIDSLLSNISRTFLDQDIDTAINFTLRVMGE 443

Query: 469 ----NREGIILS------TNRAVSK-------LFGYPVEDILRKPFTVFLE--------- 502
               +R  II         N            L G  ++ +  + FT F +         
Sbjct: 444 YTASDRSYIIRYSESQNQMNNTYEWCAEGIVPLIG-DLQAVSTQSFTWFYQQLISAKVVK 502

Query: 503 -QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL------SLRIIIKKLPFSSCYS 555
                 +      E  +L+ +     + +   +   L+      +++             
Sbjct: 503 IPRLSDLPPEANAEKAALERQCVQSTVNVALMESGNLVGFIGLNTVKSSRNWSSEEIGLL 562

Query: 556 LTMHDISE----WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
             + +I        + +     A K A   S  KS+FLA +SHE+RTPLTAI+G SE ++
Sbjct: 563 KIVGEIVAISLARHEAEVAQEKAAKAAFAASKSKSEFLANMSHELRTPLTAILGLSEALR 622

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
           ++ FGPL   +  +    I++SG  +L+++ND+LD+SKIESGKM LH     +      +
Sbjct: 623 DEVFGPLT-AKQHQKLATIEQSGQHLLELINDVLDLSKIESGKMELHLSNTDIQGLCDAS 681

Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
           ++ V+  A++K+I +       I ++  D R ++Q+ +N+LSNA+ FTP  G + I    
Sbjct: 682 LAFVRQQAHQKQIKLSAHVPPRIGKVKIDERRMRQLLINLLSNAVKFTPESGAVWIEVKG 741

Query: 732 T-SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
              +E +   V DTG+G+    + K  +PF Q+ +S   R  GTGLGL L + +++ + G
Sbjct: 742 DLEHETLQFIVADTGIGIAPENIGKLFQPFVQVDSSFTRRYAGTGLGLALVRQVIELHGG 801

Query: 791 KFYIFSTPAKGTLIEIIFP 809
              + S    G+   +  P
Sbjct: 802 SVSLESELGSGSRFTVSLP 820



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 42/361 (11%), Positives = 94/361 (26%), Gaps = 27/361 (7%)

Query: 238 NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297
           +             D LK      +         +E    +  +   ++      Q N +
Sbjct: 84  DIPIIFISALNDAADQLKAFAVGGVDYITKPFRIEEILARVKNHLRLRELQKKLAQQNER 143

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSV 357
              E     +   L       E       +       +    +             Y   
Sbjct: 144 LEKE---IWDRQLLEDKLRSSEAAIRVFFEAMNDIVLLIDAEDFSIKVAPTNSTRFYPDD 200

Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
            DI                +N  I    +  +  T    +     +    E     +  P
Sbjct: 201 TDILGQ------TIEQFFGENAEIFQSQIRLALDTQQIVNFEYSLLTSQGEVWFIASITP 254

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA--IINREGIIL 475
             +            +  +  D +  +  +     +  S+++     I   I N +  + 
Sbjct: 255 TSEN-------TVAWVGRDISDRKQVEAALRQSEERFRSLVDNIPGAIYRCIFNSDVRVE 307

Query: 476 STNRAVSKLFGYPVEDILR---KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
             + AV ++ GY   + +    + +T  +      ++   + + L +     LE   +  
Sbjct: 308 FFSDAVEEIVGYQASEFIHDRVRSWTSIVHPQDREMVKLTIQKSLEIRHPFVLEYRVIN- 366

Query: 533 TKEEKLLSLRIIIKKLPFSSCYSLTMH----DISEWKQEKNKLSHAKKIAEKESSHKSDF 588
                +  +    +         L +     DIS+ KQ++  L    KI    S+    F
Sbjct: 367 -ANGSIRWVYDKGQGCFAQDGSLLWIDGAIFDISDRKQQEETLQRRAKIDSLLSNISRTF 425

Query: 589 L 589
           L
Sbjct: 426 L 426


>gi|227529844|ref|ZP_03959893.1| PAS/PAC sensor signal transduction histidine kinase [Lactobacillus
           vaginalis ATCC 49540]
 gi|227350328|gb|EEJ40619.1| PAS/PAC sensor signal transduction histidine kinase [Lactobacillus
           vaginalis ATCC 49540]
          Length = 622

 Score =  323 bits (828), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 82/426 (19%), Positives = 170/426 (39%), Gaps = 44/426 (10%)

Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI-EVMQLC 455
             R  T++  R       F    +     E     G            ++    E  +L 
Sbjct: 211 EMRKQTLRIARG-----DFSGQVRVMGNDELGQLAGAVNNLSVRVEEAQESSDSERRRLD 265

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRKPFTVFLEQNTPSVMNHYLT 514
           S+L   SDG+   +R G +   N    +L G    ++++ K     L+      +   + 
Sbjct: 266 SVLSHMSDGVLATDRRGNVTIVNNMALQLLGVEHDDELIGKSIIDVLDIRHDYTVRQLVN 325

Query: 515 EILSLDLRQTLEKITLGSTKE-EKLLSLRIIIKKLPFSSCYS----LTMHDISEWKQEKN 569
                      +K  +         L L      +   S +       +HD++  ++E+ 
Sbjct: 326 S---------EQKEMILDMSNSGSNLILNAYFSPIQRESGFVSGLVCVLHDVTSQQKEEQ 376

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +              + +F++ VSHE+RTPLT++  + E + +  +         ++   
Sbjct: 377 E--------------RKEFVSNVSHELRTPLTSVKSYVEALSDGAWQ--DKEIAPQFLKV 420

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI----- 684
           +      ++ ++NDLL +S++++G   L+ E V+++E  +  ++   +   ++       
Sbjct: 421 VQDETERMIRMINDLLSLSRMDAGTTKLNLEYVNINELFNYILNRFDMIIKKEEDPKKKK 480

Query: 685 -LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
             I   F      +  D     Q+  NI++NAI ++P GG I       ++  VI+ + D
Sbjct: 481 YTIERFFTKKDLWVEIDTDKFTQVIDNIMNNAIKYSPDGGVITARL-LETHNHVIMSISD 539

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
            G+G+   +L      F ++  ++  +  GTGLGL ++K +V+   G+ ++ S   KG+ 
Sbjct: 540 QGLGIPRKDLSHIFDRFFRVDKARSRKQGGTGLGLAISKEVVNMLGGQIWVDSVEGKGST 599

Query: 804 IEIIFP 809
             I  P
Sbjct: 600 FYISLP 605


>gi|78187210|ref|YP_375253.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium luteolum DSM
           273]
 gi|78167112|gb|ABB24210.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium luteolum DSM
           273]
          Length = 774

 Score =  323 bits (828), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 99/629 (15%), Positives = 214/629 (34%), Gaps = 47/629 (7%)

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
           F  + ++    S   K      + Q    +   +    SL       D      +     
Sbjct: 18  FELVPDMLCRMSIEGKLLQVNAAWQKHLGYTSRELLSMSLYRLLHPDDRSSTKREMERQR 77

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
           S + ++       + + +    +      ++         +   + +          L  
Sbjct: 78  SGQRTVNFINRMQSRSGDWLWMEWNASPAED-----GVVYAVARNITGRMQAARKTRLLT 132

Query: 324 ETVDKCPIPFFVYSHG--NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
           +    C     +       +   NP+F  L      +       ++ L       D+   
Sbjct: 133 DAFQHCTHGLAIEDPDTRRILACNPAFAGLHGRTVEE-------MTGLHLMEFYPDSQKD 185

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
                        +        + +  + + +        ++  + + Q     +  + R
Sbjct: 186 VVSSCLLRSAESGSCKFEAFKSRKDG-SLVPVQVDIVFVRDEHGDPLYQIVTAEDITERR 244

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRKPFTVF 500
             ++ +     +  +++E+  DGI I   +      N A  ++FG    E++L +P    
Sbjct: 245 EAEKALRESESRFRAVVESAPDGIFIQTGD-TFAYLNPAALRMFGAAKEEEMLSRPVVDH 303

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTM 558
           L  +    +   + ++    +     +       +       +              + +
Sbjct: 304 LHPDFRERVLERIRKLNEERIGLPFPEERRFLRCDGSFFDADVSAVPFMHDGQHGALVFV 363

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKS--DFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
           HD +E  + + +    ++   +    +S       V+H++   LT I+G++E I + +FG
Sbjct: 364 HDTTERHRAEEERLRLRQDLFQSQKMESIGRLAGGVAHDLNNLLTPILGYAE-ILDGQFG 422

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
           P  + R  +    I  +G    D++  LL  S+    + +L F  ++L+  V   + L++
Sbjct: 423 P-DDERLQD-IRAIHGAGVRARDLIRQLLAFSR----RQSLDFRVLNLNAVVRGFLPLLR 476

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE- 735
               E  I I+ + A  +  I  D+  ++Q+ +N+  NA H  P GGQ+ IST   +   
Sbjct: 477 RTLPE-NIAIKEALAEGVVAIEGDIGQIEQVMMNLAVNAQHAMPGGGQLSISTEMVAAGL 535

Query: 736 -------------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
                         V L   D+G GM    LE+  +PF         +G GTGLGL    
Sbjct: 536 LPRDVLDEIGPVDCVALSFTDSGAGMDRDTLERVFEPFFTTK----EKGSGTGLGLATVY 591

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
            +   + G   + STP +G    +  P+ 
Sbjct: 592 GIARQHNGMVAVASTPGEGASFTVYVPVS 620



 Score = 99.7 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 57/509 (11%), Positives = 133/509 (26%), Gaps = 34/509 (6%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGK 146
            +   G L +++    K +G  + +++ M L  +            +      Q T    
Sbjct: 27  RMSIEGKLLQVNAAWQKHLGYTSRELLSMSLYRLLHPDDRSSTKREMERQRSGQRTVNFI 86

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
             +    G   ++ ++  A P             + +              + L   F H
Sbjct: 87  NRMQSRSGD--WLWMEWNASPAEDG-------VVYAVARNITGRMQAARKTRLLTDAFQH 137

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
                       +      +      H R   +++ L     + D         LL S E
Sbjct: 138 CTHGLAIEDPDTRR-ILACNPAFAGLHGRTVEEMTGLHLMEFYPDSQKDVVSSCLLRSAE 196

Query: 267 SSLPEQEDF-HTINLNQYTKKQYFGTLQNNSK----ESFEYLSHRNHPSLSAYFDEGENL 321
           S   + E F    + +    +     +++       +                  E E+ 
Sbjct: 197 SGSCKFEAFKSRKDGSLVPVQVDIVFVRDEHGDPLYQIVTAEDITERREAEKALRESESR 256

Query: 322 TPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
               V+  P   F+ +     Y NP+ L +      +++     +  L           +
Sbjct: 257 FRAVVESAPDGIFIQTGDTFAYLNPAALRMFGAAKEEEMLSRPVVDHLHPD---FRERVL 313

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
           + +     +R  +        ++ +  +            +             +  +  
Sbjct: 314 ERIRKLNEERIGLPFPEERRFLRCDG-SFFDADVSAVPFMHDGQH--GALVFVHDTTERH 370

Query: 442 INKRK-MEIEVMQLCSI-LEATS--DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
             + + + +      S  +E+     G    +   ++         L G    D  R   
Sbjct: 371 RAEEERLRLRQDLFQSQKMESIGRLAGGVAHDLNNLLTPILGYAEILDGQFGPDDERLQD 430

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK-EEKLLSL------RIIIKKLPF 550
              +           + ++L+   RQ+L+   L         L L        I  K   
Sbjct: 431 IRAIHGAGVRA-RDLIRQLLAFSRRQSLDFRVLNLNAVVRGFLPLLRRTLPENIAIKEAL 489

Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAE 579
           +        DI + +Q    L+   + A 
Sbjct: 490 AEGVVAIEGDIGQIEQVMMNLAVNAQHAM 518


>gi|323936096|gb|EGB32390.1| hsp90-like protein [Escherichia coli E1520]
          Length = 778

 Score =  323 bits (828), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 86/438 (19%), Positives = 180/438 (41%), Gaps = 21/438 (4%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L +           L  +Q     +     I   +  +         ++ E
Sbjct: 81  EESRQRLSRLVQKLEEMRERDLSL-NVQLKDNIAQLNQEIAVREKAEAELQETFGQLKIE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             +    + ++E +   L S L+A+ D +   N +      NRA+  L G   + ++   
Sbjct: 140 IKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCY 554
                     + +     ++   ++  T E+        +    +R +    ++      
Sbjct: 200 PADVYSPEAAAKVIETDEKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGL 259

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+        +   E+ S  K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 260 MGFGRDITERKR-------YQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE 312

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     +Y   I  S   + +I ND++D+ K+E  K+ L  +PV     +++  +L
Sbjct: 313 LTA----EQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENL 368

Query: 675 VQLYANEKRILIRTSFANNIP---RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
             L A +K   +R +    +P   +++ D   ++QI  N++SNA+ FT  G Q+ +   +
Sbjct: 369 SALQAQQKG--LRFNLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQG-QVTVRVRY 425

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMG 790
              + +   V D+G+G+   EL+K    + Q+ +S   +   GTG+GL +++ +     G
Sbjct: 426 DEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGG 485

Query: 791 KFYIFSTPAKGTLIEIIF 808
              + S   KG+   +  
Sbjct: 486 DITVTSEQGKGSTFTLTI 503


>gi|237706038|ref|ZP_04536519.1| aerobic respiration control sensor protein ArcB [Escherichia sp.
           3_2_53FAA]
 gi|226899078|gb|EEH85337.1| aerobic respiration control sensor protein ArcB [Escherichia sp.
           3_2_53FAA]
          Length = 778

 Score =  323 bits (828), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 86/438 (19%), Positives = 180/438 (41%), Gaps = 21/438 (4%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L +           L  +Q     +     I   +  +         ++ E
Sbjct: 81  EESRQRLSRLVQKLEEMRERDLSL-NVQLKDNIAQLNQEIAVREKAEAELQETFGQLKIE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             +    + ++E +   L S L+A+ D +   N +      NRA+  L G   + ++   
Sbjct: 140 IKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCY 554
                     + +     ++   ++  T E+        +    +R +    ++      
Sbjct: 200 PADVYSPEAAAKVIETDEKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGL 259

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+        +   E+ S  K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 260 MGFGRDITERKR-------YQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE 312

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     +Y   I  S   + +I ND++D+ K+E  K+ L  +PV     +++  +L
Sbjct: 313 LTA----EQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENL 368

Query: 675 VQLYANEKRILIRTSFANNIP---RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
             L A +K   +R +    +P   +++ D   ++QI  N++SNA+ FT  G Q+ +   +
Sbjct: 369 SALQAQQKG--LRFNLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQG-QVTVRVRY 425

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMG 790
              + +   V D+G+G+   EL+K    + Q+ +S   +   GTG+GL +++ +     G
Sbjct: 426 DEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGG 485

Query: 791 KFYIFSTPAKGTLIEIIF 808
              + S   KG+   +  
Sbjct: 486 DITVTSEQGKGSTFTLTI 503


>gi|91212635|ref|YP_542621.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           UTI89]
 gi|117625502|ref|YP_858825.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           APEC O1]
 gi|215488526|ref|YP_002330957.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O127:H6 str. E2348/69]
 gi|218560280|ref|YP_002393193.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           S88]
 gi|306816448|ref|ZP_07450580.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           NC101]
 gi|312968451|ref|ZP_07782660.1| aerobic respiration control sensor protein arcB [Escherichia coli
           2362-75]
 gi|331649010|ref|ZP_08350098.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           M605]
 gi|91074209|gb|ABE09090.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           UTI89]
 gi|115514626|gb|ABJ02701.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           APEC O1]
 gi|215266598|emb|CAS11037.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli O127:H6 str. E2348/69]
 gi|218367049|emb|CAR04820.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli S88]
 gi|281180252|dbj|BAI56582.1| aerobic respiration sensor-response protein [Escherichia coli SE15]
 gi|294492786|gb|ADE91542.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           IHE3034]
 gi|305850013|gb|EFM50472.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           NC101]
 gi|307625191|gb|ADN69495.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           UM146]
 gi|312286669|gb|EFR14580.1| aerobic respiration control sensor protein arcB [Escherichia coli
           2362-75]
 gi|315288991|gb|EFU48389.1| PAS domain S-box [Escherichia coli MS 110-3]
 gi|323957642|gb|EGB53356.1| hsp90-like protein [Escherichia coli H263]
 gi|324008722|gb|EGB77941.1| PAS domain S-box [Escherichia coli MS 57-2]
 gi|330909262|gb|EGH37776.1| aerobic respiration control sensor protein arcB [Escherichia coli
           AA86]
 gi|331042757|gb|EGI14899.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           M605]
          Length = 778

 Score =  323 bits (828), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 86/438 (19%), Positives = 180/438 (41%), Gaps = 21/438 (4%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L +           L  +Q     +     I   +  +         ++ E
Sbjct: 81  EESRQRLSRLVQKLEEMRERDLSL-NVQLKDNIAQLNQEIAVREKAEAELQETFGQLKIE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             +    + ++E +   L S L+A+ D +   N +      NRA+  L G   + ++   
Sbjct: 140 IKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCY 554
                     + +     ++   ++  T E+        +    +R +    ++      
Sbjct: 200 PADVYSPEAAAKVIETDEKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGL 259

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+        +   E+ S  K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 260 MGFGRDITERKR-------YQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE 312

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     +Y   I  S   + +I ND++D+ K+E  K+ L  +PV     +++  +L
Sbjct: 313 LTA----EQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENL 368

Query: 675 VQLYANEKRILIRTSFANNIP---RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
             L A +K   +R +    +P   +++ D   ++QI  N++SNA+ FT  G Q+ +   +
Sbjct: 369 SALQAQQKG--LRFNLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQG-QVTVRVRY 425

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMG 790
              + +   V D+G+G+   EL+K    + Q+ +S   +   GTG+GL +++ +     G
Sbjct: 426 DEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGG 485

Query: 791 KFYIFSTPAKGTLIEIIF 808
              + S   KG+   +  
Sbjct: 486 DITVTSEQGKGSTFTLTI 503


>gi|332526001|ref|ZP_08402141.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax benzoatilyticus
           JA2]
 gi|332109846|gb|EGJ10474.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax benzoatilyticus
           JA2]
          Length = 972

 Score =  323 bits (828), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 112/673 (16%), Positives = 210/673 (31%), Gaps = 57/673 (8%)

Query: 182 GIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS 241
             +     + +P  L        +    + +       E  ++  + +        +   
Sbjct: 47  AALRQIAAEVEPGMLVLAAGSGDTAPAAVAQRLDRARNELLELGRRAAADAPAARFSAAL 106

Query: 242 SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE-------------DFHTINLNQYTKKQY 288
                  H+   L+         E+++    E                   L        
Sbjct: 107 DAALAAPHEGRTLRALAAAWRDFEDTTQAGAEQRRRDADRRFALLLLSAAALVAAVLAWM 166

Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSF 348
              L+ ++      L    H            L+ ET     + ++      L +AN ++
Sbjct: 167 LRPLRADAALPDAPLEATGHSVFEPGEHPLARLSGETPAML-VAYW-DRALRLRFANQAY 224

Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
           L     +    +    G              A  PV    +    +A       +     
Sbjct: 225 LDWYGLERDAVLGRTMG----------EVLGAEVPVRRREALERVLAGEVVQTRLDIEGS 274

Query: 409 NSLAMTFIPFEKANQFPENMPQ-------NGIEPEDVDTRINKRKMEIEVMQL-CSILEA 460
                 F  +   ++    +              +                     + + 
Sbjct: 275 RGRRGHFWVYRLPDKRRGRIAGFYFIASNVSELQDARLAAEAANLALARAEAFTRELADT 334

Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520
               +   + E      N A    F     ++L +     +          ++   L  +
Sbjct: 335 LPAVVLYWDHEERCRFANLAAQDWFARGEAELLGRSIAELIPAEQYEGARPFIEGALRGE 394

Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKN-------K 570
            +   E        + + + L               +   + D+   KQ +        +
Sbjct: 395 RQ---EYERTLVRADGRAVPLYAHYVPRVIDGQVVGFLAVLTDVGALKQAEQRLAEANGQ 451

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           L      AE  +  KS FLA +SHEIRTP+ AIIG + +I      PL      E    +
Sbjct: 452 LEQRAVQAEAATRAKSAFLANMSHEIRTPMNAIIGLTHLISRATQDPL----QRERLRKV 507

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
           D +   +L I+ND+LD+SKIE+GK+ L     S DE ++ A+ +V+  A  K + +    
Sbjct: 508 DGAAAHLLQILNDILDLSKIEAGKLRLDPVDFSRDELIARALDVVEASARAKGLELVLDT 567

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDTGV 746
            +   R+  D R + Q  +N+L NA+ FT  G  + +            +V   V+DTG+
Sbjct: 568 DHLPARLRGDARLLSQALINLLGNAVKFTEHG-WVRLRAALLREHGQRLQVRFEVQDTGI 626

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI-- 804
           G+   +  +    F Q  +S   R  GTGLGL L + + +   G     S P  G+    
Sbjct: 627 GIAPEQQARLFTAFEQADSSSTRRHGGTGLGLALTRHIAELMGGSADAVSRPGAGSTFGL 686

Query: 805 EIIFPLYDTSHPH 817
            +     ++  P 
Sbjct: 687 TVWLERAESVPPE 699



 Score = 46.9 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 42/418 (10%), Positives = 104/418 (24%), Gaps = 38/418 (9%)

Query: 59  QESVSNTNYLDSENTFVFDPIPRTV-RFTWNI--------DAHGYLKEISEELPKTIGNY 109
            ++      L++    VF+P    + R +           D    L+  ++      G  
Sbjct: 172 ADAALPDAPLEATGHSVFEPGEHPLARLSGETPAMLVAYWDRALRLRFANQAYLDWYGLE 231

Query: 110 AFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIY 169
              ++G  + +V   L  +      + L+R        T   IEG+              
Sbjct: 232 RDAVLGRTMGEV---LGAEVPVRRREALERVLAGEVVQTRLDIEGSRGRRGHFWVYRLPD 288

Query: 170 SRNREFSGF----RGFGIVHVNRVDNDPRALGKRLDKKF-SHLHEIKKGHSSVEKEKYDI 224
            R    +GF         +   R+  +   L     + F   L +           +   
Sbjct: 289 KRRGRIAGFYFIASNVSELQDARLAAEAANLALARAEAFTRELADTLPAVVLYWDHEERC 348

Query: 225 FSQQSPP--PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQ 282
                       R + ++   +       +  +  +  +  +      E E        +
Sbjct: 349 RFANLAAQDWFARGEAELLGRSIAELIPAEQYEGARPFIEGALRGERQEYERTLVRADGR 408

Query: 283 YTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLF 342
                     +    +   +L+           ++        +++  +           
Sbjct: 409 AVPLYAHYVPRVIDGQVVGFLAVLTDVGALKQAEQRLAEANGQLEQRAV-----QAEAAT 463

Query: 343 YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT 402
            A  +FL    ++    +    GL+ L+           +   L + D         L+ 
Sbjct: 464 RAKSAFLANMSHEIRTPMNAIIGLTHLISRATQDPLQRER---LRKVDGAAAHLLQILND 520

Query: 403 IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
           I               +         P +    E +   ++  +       L  +L+ 
Sbjct: 521 I-----------LDLSKIEAGKLRLDPVDFSRDELIARALDVVEASARAKGLELVLDT 567


>gi|260846023|ref|YP_003223801.1| hybrid sensory histidine kinase ArcB in two-component regulatory
           system with ArcA [Escherichia coli O103:H2 str. 12009]
 gi|257761170|dbj|BAI32667.1| hybrid sensory histidine kinase ArcB in two-component regulatory
           system with ArcA [Escherichia coli O103:H2 str. 12009]
          Length = 778

 Score =  323 bits (828), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 85/436 (19%), Positives = 178/436 (40%), Gaps = 17/436 (3%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L +           L  +Q     +     I   +  +         ++ E
Sbjct: 81  EESRQRLSRLVQKLEEMRERDLSL-NVQLKDNIAQLNQEIAVREKAEAELQETFGQLKIE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             +    + ++E +   L S L+A+ D +   N +      NRA+  L G   + ++   
Sbjct: 140 IKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCY 554
                     + +     ++   ++  T E+        +    +R +    ++      
Sbjct: 200 PADVYSPEAAAKVIETDEKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGL 259

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+        +   E+ S  K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 260 MGFGRDITERKR-------YQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE 312

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     +Y   I  S   + +I ND++D+ K+E  K+ L  +PV     +++  +L
Sbjct: 313 LTA----EQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENL 368

Query: 675 VQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
             L A +K +         +P +++ D   ++QI  N++SNA+ FT  G Q+ +   +  
Sbjct: 369 SALQAQQKGLCFNLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQG-QVTVRVRYDE 427

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMGKF 792
            + +   V D+G+G+   EL+K    + Q+ +S   +   GTG+GL +++ +     G  
Sbjct: 428 GDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDI 487

Query: 793 YIFSTPAKGTLIEIIF 808
            + S   KG+   +  
Sbjct: 488 TVTSEQGKGSTFTLTI 503


>gi|307297683|ref|ZP_07577489.1| PAS/PAC sensor signal transduction histidine kinase [Thermotogales
           bacterium mesG1.Ag.4.2]
 gi|306916943|gb|EFN47325.1| PAS/PAC sensor signal transduction histidine kinase [Thermotogales
           bacterium mesG1.Ag.4.2]
          Length = 416

 Score =  323 bits (828), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 86/397 (21%), Positives = 169/397 (42%), Gaps = 30/397 (7%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
            E             ++      +     ++  +  L  I +  SD   I + +G I   
Sbjct: 41  VEVPRSAEFIFIYKKVQQLISSMKEEIALLDTRIENLVMIFDNLSDAFLIASEDGKIEYA 100

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
           N+A  +L     + ++    +  +       +     + +     Q  E           
Sbjct: 101 NKAAQEL---SSKQLVGLRISEGI---DSYYIGDLFEDSVRTQESQ--ESEITIYYPRRS 152

Query: 538 LLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
           + + +I+   L     Y + + DI++ K+ +              + + DF+A VSHE+R
Sbjct: 153 VRNCKIMRVTLKSEVRYLILLRDITKEKEVE--------------AMRRDFVANVSHELR 198

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TPLT+I G++E +               + + I+     +  ++NDLLD+ K+ESG+ + 
Sbjct: 199 TPLTSIHGYAETLAEDDL--EDKETVYRFLSIIENESARMTRLINDLLDLEKLESGEASF 256

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
             E V L E V+  + +V+  A+EK + I       I  +  D   + Q+ LN++ NA+ 
Sbjct: 257 SKEDVELGEVVNYVMRIVEPLASEKNVSINVDVDEGI-FVEGDFDRLVQLLLNLVDNAVK 315

Query: 718 FT--PSGG--QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
           +T     G  +I +   +  N   ++ V DTGVG+    L+   + F ++  ++  +  G
Sbjct: 316 YTFAKEHGPKEIWLR-AYAQNNSAMIEVEDTGVGIPEDSLKHIFERFYRVDKARSRKMGG 374

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           TGLGL + + +V+ + G   + S    GT++++  PL
Sbjct: 375 TGLGLAITRFIVEKHGGTISLESEYGTGTILKVKLPL 411


>gi|284164195|ref|YP_003402474.1| multi-sensor signal transduction histidine kinase [Haloterrigena
            turkmenica DSM 5511]
 gi|284013850|gb|ADB59801.1| multi-sensor signal transduction histidine kinase [Haloterrigena
            turkmenica DSM 5511]
          Length = 1195

 Score =  323 bits (828), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 113/758 (14%), Positives = 259/758 (34%), Gaps = 52/758 (6%)

Query: 64   NTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIG------NYAFKMIGMR 117
                  +E  F   P+  +VR     +A G L   ++   +T+G        A  + G  
Sbjct: 480  ERERAQTEQLFQTAPVAISVR-----NADGELVRANQRARETLGAADGSPIDAATIGGRD 534

Query: 118  LCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSG 177
            + DV + +  D +         +  +  +  L   +G        L A P++  +     
Sbjct: 535  VRDVDETVASDESPAARVRATGEPMFNQEIVLEGPDGE--RRWFSLNAAPVFDADGALER 592

Query: 178  FRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK 237
                G   +  +    + L +R  +  + L EI    S       D    +    +   +
Sbjct: 593  VVSVGE-EITELKVQKQRLQRRKSELETELSEILGRVSDGFYALDD--EFRFTHVNETAE 649

Query: 238  NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297
              +                 +      E+      E   +++  + ++            
Sbjct: 650  ELLGRSRAELLGTVLWDVFPEAVGSDLEDRYREALETQQSLSFERRSRPLGIWAQVQVYP 709

Query: 298  ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKS 356
                   +    S     +         V+      +V          N ++  LT Y  
Sbjct: 710  SETGLSIYFRDISERKARERELTTYETIVETVEDGIYVLDEDERFTTVNETYAELTGYDR 769

Query: 357  VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
             + +           +  ++++   +   +   DR        L T     ++   +   
Sbjct: 770  EELLGA-------HASTVVTESAMDRAQTVATDDREIPTIETELET-----KSGSRVPVE 817

Query: 417  PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII-NREGIIL 475
                     +   + G+  +  D R  +RK+E    +  ++ E   +GI  + + E    
Sbjct: 818  ASVATLAATDGRERVGVVRDITDRRERQRKLEASEQRYRTLAENFPNGIVALYDDELRYT 877

Query: 476  STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
            +    +    G   E+ + +        +  + +  +    L+    ++ E    G    
Sbjct: 878  AAGGQLVDQLGIDQENAIGQRIHDRYPDDILAEIEPHFRAALA-GEERSFEVSYYGRRLS 936

Query: 536  EKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
               L +R             L + D++E        +  ++  E+ +     F    SH+
Sbjct: 937  AHTLPVRTA----GDVRAGMLVVQDVTER-------AEYQRKLEESNERLEQFAYAASHD 985

Query: 596  IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
            ++ PL  +  + + +   R+    +    E+ ++       + +++  LL  S++E+   
Sbjct: 986  LQEPLRMVTSYLQ-LIENRYADELDADGREFIDFAVDGAERMREMIEGLLAYSRVETRGD 1044

Query: 656  NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715
               FEPV L+E +      ++L   E    I    A+++PR+  D   ++Q+  N+LSNA
Sbjct: 1045 P--FEPVDLEETLEAVRRDLELQIEESDAEIT---ADSLPRVRGDPSQLRQVFQNLLSNA 1099

Query: 716  IHFT-PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
            I ++ P   +I +       +   + V D G+G+   + ++  + F ++    +   +GT
Sbjct: 1100 IEYSGPEPPRIHLEAE-RKGDRWRVSVTDEGIGIDPEDADRVFEIFQRLHG--REEHDGT 1156

Query: 775  GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
            G+GL L + +V+ + G+  + S P +G+   +  P  D
Sbjct: 1157 GIGLALCQRIVERHGGEIRVESEPGEGSTFSVTLPAAD 1194



 Score = 89.3 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 60/598 (10%), Positives = 149/598 (24%), Gaps = 103/598 (17%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLC-----------DVSDILHIDPNNHIG 134
            + +DA      + E L  T G     ++G  +            D +   H +      
Sbjct: 45  VFRLDADDRFVAVDETLLSTAGCDREALLGEHVSTLLSTDEAAQLDAARQTHSEAEGKDR 104

Query: 135 DLLKRQN---TWYG-------KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIV 184
             L+R++      G       +  L   +GT   VP  L   P+   + EF G  G    
Sbjct: 105 ADLERRDDADARRGPESVTTLECALRTADGTA--VPYRLRLAPVR-VDGEFRGSIGVVRE 161

Query: 185 H------------VNRVDNDPRALGKRLDKKFSHLHEIKKGH-----------------S 215
                            +       +   +      E                      +
Sbjct: 162 RSESDTSSGGAGSDADRERVDSEPDRETARPTETPTEAAATVFEDAAVGVFVFDEATEVA 221

Query: 216 SVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS-LPEQED 274
            +       F         R +  V   T      D     +         ++   E   
Sbjct: 222 WLNAAAERYFGIDRETVLGRNRESVIDETLGDRVADPAAFRDAVTATDDGAAAERSECHV 281

Query: 275 FHTINLNQYTKKQYFGTLQ----------------NNSKESFEYLSHRNHPSLSAYFDEG 318
               +  +   +     ++                +  + +++              D  
Sbjct: 282 TAAGDRAERWLEFRGRPIESGPYAGGRIELYYDVTDQHRRAYQLRRLNEAVREWLASDSR 341

Query: 319 ENLTPETVDKCPI-------PFFVYSHGN-----LFYANPSFLLLTKYKSVDDIEIAGGL 366
           E +     ++            F++         + ++ P+   + +  +  + E     
Sbjct: 342 EAVAERATEQLVDILGLEINGVFLHDPDARELRPVAWSEPAAAAIGEIPTFAEGEGIAWR 401

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
                  ++ D+    P +            + +     +    +  +       +    
Sbjct: 402 VFDSGRAEIDDDVTADPDVY----NPETPIRSEICLPIGDHGVVIIGSERRDAFDDADLS 457

Query: 427 NMPQNGIEPE-DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
                    E   D   ++R +E E  Q   + +     I++ N +G ++  N+   +  
Sbjct: 458 LAKVVASSLEAIFDRLRHERSLERERAQTEQLFQTAPVAISVRNADGELVRANQRARETL 517

Query: 486 G------YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
           G           I  +         T +        + +        +  +    + +  
Sbjct: 518 GAADGSPIDAATIGGRDVRDV--DETVASDESPAARVRATGEP-MFNQEIVLEGPDGERR 574

Query: 540 SLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
              +    +  +            +I+E K +K +L   ++   +  +  S+ L RVS
Sbjct: 575 WFSLNAAPVFDADGALERVVSVGEEITELKVQKQRL---QRRKSELETELSEILGRVS 629



 Score = 71.2 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 27/299 (9%), Positives = 75/299 (25%), Gaps = 18/299 (6%)

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTK 353
           ++     +          +     G +      +             L  A  +      
Sbjct: 42  DDGVFRLDADDRFVAVDETLLSTAGCDREALLGEHVSTLLSTDEAAQLDAARQTHSEAEG 101

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR---ENS 410
               D +E            +  ++       L  +D T +    RL  ++ +     + 
Sbjct: 102 KDRAD-LERRDDADAR----RGPESVTTLECALRTADGTAVPYRLRLAPVRVDGEFRGSI 156

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470
             +        +        +    +    R   R  E       ++ E  + G+ + + 
Sbjct: 157 GVVRERSESDTSSGGAGSDADRERVDSEPDRETARPTETPTEAAATVFEDAAVGVFVFDE 216

Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ------NTPSVMNHYLTEILSLDLRQT 524
              +   N A  + FG   E +L +     +++        P+     +T        + 
Sbjct: 217 ATEVAWLNAAAERYFGIDRETVLGRNRESVIDETLGDRVADPAAFRDAVTATDDGAAAER 276

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFS---SCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
            E        +     L    + +             +D+++  +   +L    +   +
Sbjct: 277 SECHVTA-AGDRAERWLEFRGRPIESGPYAGGRIELYYDVTDQHRRAYQLRRLNEAVRE 334


>gi|194014833|ref|ZP_03053450.1| sporulation sensor histidine kinase E [Bacillus pumilus ATCC 7061]
 gi|194013859|gb|EDW23424.1| sporulation sensor histidine kinase E [Bacillus pumilus ATCC 7061]
          Length = 731

 Score =  323 bits (828), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 99/732 (13%), Positives = 239/732 (32%), Gaps = 51/732 (6%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144
           F +  D H  + + +E   + +      ++   + D    +  D      DL  R+ T  
Sbjct: 40  FIF--DQHLNIIQANEATCRLVQTPKEDLLNKSVLDFLYGIPKDKIECSLDLFFRKGTLK 97

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            + ++    G   Y+              +    +   ++                ++ F
Sbjct: 98  REISIQLENGETKYIEFV--------AEHDTMNQQYIVVMRDISSKKILERERSMNEQLF 149

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
             L +       +  +   +            L+  +        +  ++++   +    
Sbjct: 150 KDLFDRAIDGMVIFDQDGCMIDANHSFCQSFELQKTDLTDRYLHEFVDEENLPSLQHLLT 209

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
              E      +      +      +    +   +               +     + E  
Sbjct: 210 SLKETGKAKGELPVTLQSGQYKLFELTITSNVMSGFYMSIMRDITEKRLMEEKLLKSEER 269

Query: 322 TPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
             +  +       ++   G +  AN S   + +      +        L+ + +      
Sbjct: 270 FRKIFENAMDAIIIWADDGEIVRANESACRIFELPMHS-LIGKKLTDFLVKSDQRYRPTR 328

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
            + +  +      +         +        + F       +         I     D 
Sbjct: 329 RRYIRNHEIREELL--------FRMANGQFKELEFTSKHAVLEGQH----LTILRNVSDR 376

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +  + ++    ++   +   + DGI + + +  I+  N + S+L G   + +        
Sbjct: 377 KRMEEELRESELKFRKVFNGSMDGIVLFDNQYRIIEVNPSASELLGLKSDHLTEMNLFHI 436

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
           L       +      +   ++    E   + +  ++++L        +   +       D
Sbjct: 437 LAPYQIEHLAQPAQAMSLDEMDN--EVPFVLNHPDQRILEFSFKRNIIHNMN--LAIFRD 492

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           ++E K+ +      +           +  A ++HEIR P+TA+ GF +++K    G    
Sbjct: 493 VTERKELEE-----RVRKSDTLHVVGELAAGIAHEIRNPMTALKGFIQLLKGNIEG---- 543

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
             Y  Y N I      +  I+ + L ++K ++    + FE  ++ + V + + L+   AN
Sbjct: 544 -EYSLYFNVITSELKRIESIITEFLILAKPQA----IVFEEKNVVQIVKDTMDLLHAQAN 598

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
              + +  +  + IP I  +   +KQ+ +NIL NAI   P  G + +S      E +++ 
Sbjct: 599 LGNVQMHLNVIDEIPLIYCEQNQLKQVFINILKNAIEVMPRKGNVYVSIQRKGEEHIVIS 658

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           +RD G GM   +L +  +PF         +  GTGLGL ++  +++ + G   + S    
Sbjct: 659 LRDEGCGMAEDKLRRLGEPFYTT------KERGTGLGLMVSYKIIEEHQGTIEVESEEGV 712

Query: 801 GTLIEIIFPLYD 812
           GT+  +  PL  
Sbjct: 713 GTVFHLTLPLRQ 724



 Score = 67.7 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 33/151 (21%), Positives = 58/151 (38%), Gaps = 10/151 (6%)

Query: 434 EPEDVDTRINKRKMEIEVMQLCS-------ILEATSDGIAIINREGIILSTNRAVSKLFG 486
             E +D   + RK+E E   L +       +L  T D I I ++   I+  N A  +L  
Sbjct: 1   MTETLDGAEDIRKLEKENEYLRTELMQQKMLLNKTLDAIFIFDQHLNIIQANEATCRLVQ 60

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
            P ED+L K    FL       +   L          TL++      +  +   +  + +
Sbjct: 61  TPKEDLLNKSVLDFLYGIPKDKIECSLDLFFRKG---TLKREISIQLENGETKYIEFVAE 117

Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSHAKKI 577
               +  Y + M DIS  K  + + S  +++
Sbjct: 118 HDTMNQQYIVVMRDISSKKILERERSMNEQL 148


>gi|116331277|ref|YP_800995.1| sensor histidine kinase and response regulator of a two component
           complex [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
 gi|116124966|gb|ABJ76237.1| Sensor histidine kinase and response regulator of a two component
           complex [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
          Length = 1023

 Score =  323 bits (828), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 109/510 (21%), Positives = 202/510 (39%), Gaps = 28/510 (5%)

Query: 310 SLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
             +A   E E      ++      + +  +  L   N  F    +     +I  + G + 
Sbjct: 242 EQAATIMEQEANLNAIIENLEAMIWSINKNYELLIFNSQFQNAMQDFYHSEI--SLGFNV 299

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
           L            K            +               +          N   E  
Sbjct: 300 LQKELPPKVFEYWKEFYDRALSGEKFSV---AGKRPNQDGTFVFSELSFHPIRNAEYEIT 356

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
             + +  +  D +  +        +   + E +S+   + +  G I   N A  K+    
Sbjct: 357 GVSAVSVDITDKKSAE-------EKFKLLFERSSEPHVLYDDSG-IFECNPATLKMLRCS 408

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT----LEKITLGSTKEEKLLSLRII 544
            +  +     +       +        +   +             +      +  S  + 
Sbjct: 409 DKKFVLGKHPIHFSAEIQADGRIEKKMMSEFESISLNKGSYTFEWVYKRFNGEEFSTEVT 468

Query: 545 IKKL--PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
           +  +       +    H+I+E K  ++ L  AK+ AE  S  K+DFLA +SHEIRTPL  
Sbjct: 469 LIPIIISQKRVFLSVWHEITERKVYEDSLKRAKESAEAASKAKTDFLAMMSHEIRTPLNG 528

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           +IG   +++    G        EY + I  SG  +L ++ND+LD+S+IESG++ L  +PV
Sbjct: 529 VIGTVSLLEGTSLGA----EQREYLDIIKSSGQNLLILLNDILDLSRIESGQLTLEMQPV 584

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPS 721
           SL +  SE I+L +  A EK ++I  S ++++P  I++D   ++QI  N+L N+I FT  
Sbjct: 585 SLKKLTSEVINLFRPMAEEKGLVIEFSISSSVPNWIISDPYRLRQILTNLLGNSIKFTEK 644

Query: 722 GGQI-IISTTHTSNE--EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
           G  +  +      N    +I  V+DTG+G+   +LE   + F Q+ +S   +  G+GLGL
Sbjct: 645 GKVLLKVEAEKFPNNKFRLIFHVKDTGIGIAEEKLELLFRAFSQVDSSTTRKYGGSGLGL 704

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            ++K + +   G+  + S   +G+   +  
Sbjct: 705 TISKKLAELMKGEIIVKSQVNQGSEFTLSI 734



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/266 (12%), Positives = 72/266 (27%), Gaps = 19/266 (7%)

Query: 317 EGENLTPETVDKCPIPFFVYSH--GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
           +   L      K      +       +   N +  L  + ++  +I      S L     
Sbjct: 116 QDAELRSTIFQKSTNTILLLDPEKDLILETNQTANLHFETQNPSEILNIPFSSLLSPGFS 175

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
            S+  + K  +L        +    L T + +R+     +F            +    I 
Sbjct: 176 FSEYESRKRKILS---GETPSWEVELKTFR-DRKFWGNTSFRTVSTRLNRIILVQIKDIT 231

Query: 435 PEDVDTR---INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS---KLFGYP 488
            +    +        +  +   L +I+E     I  IN+   +L  N       + F + 
Sbjct: 232 EKVNARKFILEQAATIMEQEANLNAIIENLEAMIWSINKNYELLIFNSQFQNAMQDFYHS 291

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
              +        L          +    LS +      K      ++   +   +    +
Sbjct: 292 EISLGFNVLQKELPPKVFEYWKEFYDRALSGEKFSVAGKR---PNQDGTFVFSELSFHPI 348

Query: 549 PFSS----CYSLTMHDISEWKQEKNK 570
             +       S    DI++ K  + K
Sbjct: 349 RNAEYEITGVSAVSVDITDKKSAEEK 374


>gi|116328548|ref|YP_798268.1| sensor histidine kinase and response regulator of a two component
           complex [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|116121292|gb|ABJ79335.1| Sensor histidine kinase and response regulator of a two component
           complex [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
          Length = 1023

 Score =  323 bits (828), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 109/510 (21%), Positives = 202/510 (39%), Gaps = 28/510 (5%)

Query: 310 SLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
             +A   E E      ++      + +  +  L   N  F    +     +I  + G + 
Sbjct: 242 EQAATIMEQEANLNAIIENLEAMIWSINKNYELLIFNSQFQNAMQDFYHSEI--SLGFNV 299

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
           L            K            +               +          N   E  
Sbjct: 300 LQKELPPKVFEYWKEFYDRALSGEKFSV---AGKRPNQDGTFVFSELSFHPIRNAEYEIT 356

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
             + +  +  D +  +        +   + E +S+   + +  G I   N A  K+    
Sbjct: 357 GVSAVSVDITDKKSAE-------EKFKLLFERSSEPHVLYDDSG-IFECNPATLKMLRCS 408

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT----LEKITLGSTKEEKLLSLRII 544
            +  +     +       +        +   +             +      +  S  + 
Sbjct: 409 DKKFVLGKHPIHFSAEIQADGRIEKKMMSEFESISLNKGSYTFEWVYKRFNGEEFSTEVT 468

Query: 545 IKKL--PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
           +  +       +    H+I+E K  ++ L  AK+ AE  S  K+DFLA +SHEIRTPL  
Sbjct: 469 LIPIIISQKRVFLSVWHEITERKVYEDSLKRAKESAEAASKAKTDFLAMMSHEIRTPLNG 528

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           +IG   +++    G        EY + I  SG  +L ++ND+LD+S+IESG++ L  +PV
Sbjct: 529 VIGTVSLLEGTSLGA----EQREYLDIIKSSGQNLLILLNDILDLSRIESGQLTLEMQPV 584

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPS 721
           SL +  SE I+L +  A EK ++I  S ++++P  I++D   ++QI  N+L N+I FT  
Sbjct: 585 SLKKLTSEVINLFRPMAEEKGLVIEFSISSSVPNWIISDPYRLRQILTNLLGNSIKFTEK 644

Query: 722 GGQI-IISTTHTSNE--EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
           G  +  +      N    +I  V+DTG+G+   +LE   + F Q+ +S   +  G+GLGL
Sbjct: 645 GKVLLKVEAEKFPNNKFRLIFHVKDTGIGIAEEKLELLFRAFSQVDSSTTRKYGGSGLGL 704

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            ++K + +   G+  + S   +G+   +  
Sbjct: 705 TISKKLAELMKGEIIVKSQVNQGSEFTLSI 734



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/266 (12%), Positives = 72/266 (27%), Gaps = 19/266 (7%)

Query: 317 EGENLTPETVDKCPIPFFVYSH--GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
           +   L      K      +       +   N +  L  + ++  +I      + L     
Sbjct: 116 QDAELRSTIFQKSTNTILLLDPEKDLILETNQTANLHFETQNPSEILNIPFSNLLSPGFS 175

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
            S+  + K  +L        +    L T + +R+     +F            +    I 
Sbjct: 176 FSEYESRKRKILS---GETPSWEVELKTFR-DRKFWGNTSFRTVSTRLNRIILVQIKDIT 231

Query: 435 PEDVDTR---INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS---KLFGYP 488
            +    +        +  +   L +I+E     I  IN+   +L  N       + F + 
Sbjct: 232 EKVNARKFILEQAATIMEQEANLNAIIENLEAMIWSINKNYELLIFNSQFQNAMQDFYHS 291

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
              +        L          +    LS +      K      ++   +   +    +
Sbjct: 292 EISLGFNVLQKELPPKVFEYWKEFYDRALSGEKFSVAGKR---PNQDGTFVFSELSFHPI 348

Query: 549 PFSS----CYSLTMHDISEWKQEKNK 570
             +       S    DI++ K  + K
Sbjct: 349 RNAEYEITGVSAVSVDITDKKSAEEK 374


>gi|91201393|emb|CAJ74453.1| similar to ammonium transport protein amtB possibly fused to
           histidine kinase [Candidatus Kuenenia stuttgartiensis]
          Length = 679

 Score =  323 bits (828), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 99/271 (36%), Positives = 155/271 (57%), Gaps = 11/271 (4%)

Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEK--NKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
            I I +L         ++ I E + ++    L  A    EK +  KS+FL  +SHE+RTP
Sbjct: 413 FIRITRLQD-------INTILEKRVQEKTADLQMANVALEKANRLKSEFLTTMSHELRTP 465

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L AIIGF+EV++++  G L      EY   I  SG+ +LD++N++LD+SKIE+GKM+L +
Sbjct: 466 LNAIIGFAEVLRDEIAGSLSKD-QKEYVTDIHSSGHHLLDMINNILDLSKIETGKMHLQY 524

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719
           E   +++A+++ ++++   AN K I + T+  +N P + AD    +QI  N+LSNA+ FT
Sbjct: 525 EEFCIEDAINDTLTIINASANNKGISVHTNIQDNTPLLSADKTKFRQILYNLLSNAVKFT 584

Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
           P  G+I I+     N  +   + DTG+G+   + EK  + F Q   S     EGTGLGL 
Sbjct: 585 PENGKITINVFQKDN-SLQFEIVDTGIGIKPEDKEKLFEAFHQADASLTREYEGTGLGLH 643

Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           L K +V+ + GK +  ST  KG+    I P+
Sbjct: 644 LTKRLVELHGGKIWAESTFGKGSTFFFILPI 674


>gi|308175749|ref|YP_003922454.1| sensory box histidine kinase WalK [Bacillus amyloliquefaciens DSM
           7]
 gi|307608613|emb|CBI44984.1| sensory box histidine kinase WalK [Bacillus amyloliquefaciens DSM
           7]
          Length = 611

 Score =  323 bits (828), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 86/374 (22%), Positives = 155/374 (41%), Gaps = 23/374 (6%)

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             +    +   E E  +L S++   +DG+   NR G I+  N    +L     E  L  P
Sbjct: 248 TRELEDAQAMTEGERRKLSSVIAYMTDGVIATNRNGAIILLNSPALELLNVSRETALEMP 307

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556
            T  L           + +  S+ L    +  T         ++  +I ++         
Sbjct: 308 ITSLLGIKENFTFEDLVEQQDSMLLEIDRDDETTVLR-----VNFSVIQREHGKIDGLIA 362

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            ++D++E ++                  + +F+A VSHE+RTPLT +  + E +    + 
Sbjct: 363 VLYDVTEQEKL--------------DRERREFVANVSHELRTPLTTMRSYLEALAEGAW- 407

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
                    +          ++ +VNDLL +SK +S     + E + +   +S  I   +
Sbjct: 408 -ENKEIAPRFLMVTQNETERMIRLVNDLLQLSKFDSKDYQFNREWIHMIRFMSLIIDRFE 466

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
               E+ +       +    +  D   V Q+  NI+SNA+ ++P GG +  S      EE
Sbjct: 467 -MTKEQHVEFIRELPDRNLYVEIDQDKVTQVLDNIISNALKYSPEGGHVTFSVDVNEKEE 525

Query: 737 VI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
           ++ + V+D G+G+   ++EK    F ++  ++  +  GTGLGL +AK MV A+ G  +  
Sbjct: 526 LLYISVKDEGIGIPKKDVEKVFDRFYRVDKARTRKLGGTGLGLAIAKEMVQAHGGDIWAD 585

Query: 796 STPAKGTLIEIIFP 809
           S   KGT I    P
Sbjct: 586 SVEGKGTKITFTLP 599


>gi|118478434|ref|YP_895585.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           thuringiensis str. Al Hakam]
 gi|118417659|gb|ABK86078.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           thuringiensis str. Al Hakam]
          Length = 755

 Score =  323 bits (828), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 102/532 (19%), Positives = 211/532 (39%), Gaps = 47/532 (8%)

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVD-----KCPIPFFVYSHGNLFYANPSFLLL 351
            +  E +      +     +   + T E ++                G++  AN ++  +
Sbjct: 248 GQVIEVVGSTVDITERKKVESELSATKELLESFIKHNLDAITISDREGHILQANKAYEKI 307

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ-WNRENS 410
             + S + I            P + D    + +   R   T  +   RL T++  N  + 
Sbjct: 308 FGWSSQEIIGKRL--------PCVPDFLMEESLKNIRKILTGESVVTRLETVRQRNDGSL 359

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK-------MEIEVMQLCSILEATSD 463
           L ++       +     +  + I  +  + +  +R+       +    M+  +++E  +D
Sbjct: 360 LDVSLTVSPILDVRGNVIALSAICRDISERKQAERERHRLHQQLRDSEMKYRALIEQATD 419

Query: 464 GIAI--INREG---IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
            + +  +N +      +  N    + FGY  E++L   F+  + Q++  ++   L +I  
Sbjct: 420 AVYVVELNEDNAPSRFIEVNPVGCRRFGYSREELLSLSFSNIVPQDSQMIVR-LLEKIKK 478

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578
                TL+   +  T +       + +  L     +     DI+E  + +  L  ++K+A
Sbjct: 479 GQTSFTLQDEYVFPTGKVITTEFSVRVFNLNGKKVFLSISRDITERLKTEELLRKSEKLA 538

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
                        ++HEI  PLTA+ GF +++K+ +     N     Y N +      + 
Sbjct: 539 VV-----GQLATVMAHEINNPLTAMKGFMQLLKSTK-----NENNQGYINIVSSEIERIE 588

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
            I  + + ++K +  K+  +     +   + + + L+Q  A    I  R      IP I 
Sbjct: 589 SITTEFMAVAKPQVVKIQPN----DISVLMDQVLMLLQPQAMMNNIKFRIDLNPGIPLIS 644

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
            +   +KQ+ +NIL NAI   P GG+I+I      N ++ +   D G G+    +    +
Sbjct: 645 CEGNQLKQVFVNILKNAIESMPMGGEILIQLNILDNNQLSICFIDQGCGIPKERIPYLGE 704

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           PF        I+ EG GLGL +   +++ + GK +I S   KGT++E+  P+
Sbjct: 705 PFY------SIKEEGIGLGLMICYKIIETHKGKVFIESEVNKGTIVEVTLPI 750



 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 45/289 (15%), Positives = 92/289 (31%), Gaps = 27/289 (9%)

Query: 313 AYFDEGENLTPETVDKCPIPFF----VYSHGNLFYANPSFLLLTKYKSVDDIEI-AGGLS 367
               + +    +TV +     F    V  H      +  F     + S   +      + 
Sbjct: 140 RELKKSKQELTDTVHELQGGIFKFKKVGKHFIHTLCDGQFYYQNGFYSEQVVGKSLRTID 199

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
             +  P L          L   +   I        + W  + ++ +         +  + 
Sbjct: 200 ASIIPPHLVPQLMKY--YLQAWEGKEIIFE-----LPWPNDKTIILI--ALRPIKRNGQV 250

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
           +   G   +  + +  + ++      L S ++   D I I +REG IL  N+A  K+FG+
Sbjct: 251 IEVVGSTVDITERKKVESELSATKELLESFIKHNLDAITISDREGHILQANKAYEKIFGW 310

Query: 488 PVEDILRKPFTV---FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
             ++I+ K       FL + +   +   L               T+    +  LL + + 
Sbjct: 311 SSQEIIGKRLPCVPDFLMEESLKNIRKIL-----TGESVVTRLETVRQRNDGSLLDVSLT 365

Query: 545 IKKLPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
           +  +               DISE KQ + +     +   ++S  K   L
Sbjct: 366 VSPILDVRGNVIALSAICRDISERKQAERERHRLHQQL-RDSEMKYRAL 413



 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 47/150 (31%), Gaps = 5/150 (3%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG-KTT 148
           D  G++ + ++   K  G  + ++IG RL  V D L  +   +I  +L  ++     +T 
Sbjct: 292 DREGHILQANKAYEKIFGWSSQEIIGKRLPCVPDFLMEESLKNIRKILTGESVVTRLETV 351

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +G+ L V + ++  PI              I               RL ++     
Sbjct: 352 RQRNDGSLLDVSLTVS--PILDVRGNVIALS--AICRDISERKQAERERHRLHQQLRDSE 407

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKN 238
              +       +   +          R   
Sbjct: 408 MKYRALIEQATDAVYVVELNEDNAPSRFIE 437


>gi|320661959|gb|EFX29367.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O55:H7 str. USDA 5905]
          Length = 778

 Score =  323 bits (828), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 86/438 (19%), Positives = 180/438 (41%), Gaps = 21/438 (4%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L +           L  +Q     +     I   +  +         ++ E
Sbjct: 81  EESRQRLSRLVQKLEEMRERDLSL-NVQLKDNIAQLNQEIAVREKAEAELQETFGQLKIE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             +    + ++E +   L S L+A+ D +   N +      NRA+  L G   + ++   
Sbjct: 140 IKEREDTQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCY 554
                     + +     ++   ++  T E+        +    +R +    ++      
Sbjct: 200 PADVYSPEAAAKVIETDEKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGL 259

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+        +   E+ S  K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 260 MGFGRDITERKR-------YQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE 312

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     +Y   I  S   + +I ND++D+ K+E  K+ L  +PV     +++  +L
Sbjct: 313 LTA----EQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENL 368

Query: 675 VQLYANEKRILIRTSFANNIP---RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
             L A +K   +R +    +P   +++ D   ++QI  N++SNA+ FT  G Q+ +   +
Sbjct: 369 SALQAQQKG--LRFNLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQG-QVTVRVRY 425

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMG 790
              + +   V D+G+G+   EL+K    + Q+ +S   +   GTG+GL +++ +     G
Sbjct: 426 DEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGG 485

Query: 791 KFYIFSTPAKGTLIEIIF 808
              + S   KG+   +  
Sbjct: 486 DITVTSEQGKGSTFTLTI 503


>gi|302038751|ref|YP_003799073.1| putative sensor histidine kinase [Candidatus Nitrospira defluvii]
 gi|300606815|emb|CBK43148.1| putative Sensor histidine kinase [Candidatus Nitrospira defluvii]
          Length = 924

 Score =  323 bits (828), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 100/771 (12%), Positives = 238/771 (30%), Gaps = 67/771 (8%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTWYGKTT 148
           D  G   E++E+     G+ A  +IG    D+             G +++       + T
Sbjct: 146 DLQGRYLEVNEQFLFLTGHSAAAVIGKTDSDLFPPETAALYREHDGQVIEAGAPMNFEET 205

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +G  LY+   ++  P+   +       G  I           A      ++F  + 
Sbjct: 206 WVLNDGLRLYM---VSKFPLRDEHGAIVAIGG--IATDITARLQAEAARSEAQERFDLVA 260

Query: 209 EIKKGHSSVEKEKYDIFSQ-QSPPPHLRMKNKVSSLTEYYAH------KDDVLKTEKYPL 261
              +          +           L  +    S +            +          
Sbjct: 261 TATQTGIWDWDLLTNHMYYCPLWKASLGYQENEISNSPTEWESRLHPDDNARAVALVDDY 320

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
           L+    S   +      + +    +      ++        +      +     +     
Sbjct: 321 LSGRILSYELEHRLRHRDGSYRWIQTCALLQRDADGRPRRMIGSHVDITERKRAEHALAQ 380

Query: 322 TPETVD------KCPIPFFVYSHGNLFYA--NPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
           +  T+          +       G++ +   N                            
Sbjct: 381 SESTLRSFFNSGAMMMGIVELLDGDIVHVSDNRRAASFFGTTPESMQGKRAS------EL 434

Query: 374 KLSDNNAIKPVMLYR-SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
               +     +  Y  ++RT           Q      L ++                + 
Sbjct: 435 GAPTDIIAHWIRYYEETERTKQPVRFEYVHSQRGSGVELCLSATVCWIGTGPSGRSRYSY 494

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
           +  +  + R     +     +   ++ A ++G+ + + +G I++ N +  ++ G   + +
Sbjct: 495 VVDDVTEARCLAEALGQTAERYHGLVTALAEGVLLHDEQGRIVACNPSAEQILGLTADQL 554

Query: 493 LRK----PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS-TKEEKLLSLRIIIKK 547
           + +    P    + ++           +++L   +    + +G      +   + I  + 
Sbjct: 555 MGRTPVDPEWQAIHEDGSHFAPDQRPPVVTLRTGRPCSNVIMGLSRPTGEWRWISINTQA 614

Query: 548 LPFSS-----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS---------------- 586
           L             + HDI+E ++ +  L   +   E     ++                
Sbjct: 615 LRRPGEERPYAVVGSFHDITERRRAEQALLEVQDKLEHLVRERTARIHELESQRSQAEKL 674

Query: 587 ----DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
                  A ++HE+  PL  I   +  +  Q  G   + R+  +   IDR    +  IV 
Sbjct: 675 AALGHLAADIAHEVNNPLAGI-TNAFHLVKQGIG--SDHRHYRFVELIDREIERLAIIVK 731

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702
            +  + +   G      +  ++DE + +  +LV      KR+ +RT        + A   
Sbjct: 732 KMYSLYQ---GVPATERQATNIDELLQDVATLVGHKLTSKRLRLRTDVVTRRQVVDAPRS 788

Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
            + Q+ LN++ NAI  +P+  ++ +S     + ++   V D G G+    L +  +PF  
Sbjct: 789 DLFQVLLNLVQNAIDASPADSEVGLSVA-ERDGQLRWSVTDRGTGIATDILPRIFEPFFT 847

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
             +      +G GLGL +++ +V A  G+  + + P  G+   ++ PL  +
Sbjct: 848 TKSGAGW--QGLGLGLSVSRGLVYAMGGRIEVETQPEHGSTFTVVHPLERS 896



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/184 (12%), Positives = 56/184 (30%), Gaps = 9/184 (4%)

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSDG 464
                    IP+        ++    +    V       +       ++L SIL  +   
Sbjct: 82  GGYWSHSGGIPWIGVTNRAISIGAIWLIAWVVLQWRTAARSRAHDLSVRLRSILTHSQTN 141

Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
           I + + +G  L  N     L G+    ++ K  +      T ++   +  +++       
Sbjct: 142 IFVKDLQGRYLEVNEQFLFLTGHSAAAVIGKTDSDLFPPETAALYREHDGQVIEAGAPMN 201

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEK 580
            E+  +     + L    +    L       +       DI+   Q +   S A++  + 
Sbjct: 202 FEETWVL---NDGLRLYMVSKFPLRDEHGAIVAIGGIATDITARLQAEAARSEAQERFDL 258

Query: 581 ESSH 584
            ++ 
Sbjct: 259 VATA 262



 Score = 48.1 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 32/384 (8%), Positives = 90/384 (23%), Gaps = 27/384 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D        +       G     M G R  ++     I  +  I    + + T      
Sbjct: 402 LDGDIVHVSDNRRAASFFGTTPESMQGKRASELGAPTDIIAH-WIRYYEETERTKQPVRF 460

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND-PRALGKRLDKKFSHL 207
            +        V + L+A   +         R   +V           ALG+  ++    +
Sbjct: 461 EYVHSQRGSGVELCLSATVCWIGTGPSGRSRYSYVVDDVTEARCLAEALGQTAERYHGLV 520

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
             + +G    +++   +    S    L +             +   +  +       +  
Sbjct: 521 TALAEGVLLHDEQGRIVACNPSAEQILGLTADQLMGRTPVDPEWQAIHEDGSHFAPDQRP 580

Query: 268 SLPEQEDFH----------TINLNQYTKKQYFGTLQNNSKESF-EYLSHRNHPSLSAYFD 316
            +                                L+   +E     +   +  +     +
Sbjct: 581 PVVTLRTGRPCSNVIMGLSRPTGEWRWISINTQALRRPGEERPYAVVGSFHDITERRRAE 640

Query: 317 EGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
           +      + ++             +        L ++    + +   G L+  +     +
Sbjct: 641 QALLEVQDKLEHL----VRERTARI------HELESQRSQAEKLAALGHLAADIAHEVNN 690

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRE-NSLAMTFIPFEKANQFPENMPQNGIEP 435
               I                        +RE   LA+         Q      +     
Sbjct: 691 PLAGITNAFHLVKQGIGSDHRHYRFVELIDREIERLAIIVKKMYSLYQGVPATERQATNI 750

Query: 436 EDVDTRINKR---KMEIEVMQLCS 456
           +++   +      K+  + ++L +
Sbjct: 751 DELLQDVATLVGHKLTSKRLRLRT 774


>gi|284923232|emb|CBG36326.1| aerobic respiration control protein (bifunctional two-component
           sensor kinase/response regulator) [Escherichia coli 042]
          Length = 778

 Score =  323 bits (828), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 86/438 (19%), Positives = 180/438 (41%), Gaps = 21/438 (4%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L +           L  +Q     +     I   +  +         ++ E
Sbjct: 81  EESRQRLSRLVQKLEEMRERDLSL-NVQLKDNIAQLNQEIAVREKAEAELQETFGQLKIE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             +    + ++E +   L S L+A+ D +   N +      NRA+  L G   + ++   
Sbjct: 140 IKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCY 554
                     + +     ++   ++  T E+        +    +R +    ++      
Sbjct: 200 PADVYSPEAAAKVIETDEKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGL 259

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+        +   E+ S  K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 260 MGFGRDITERKR-------YQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE 312

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     +Y   I  S   + +I ND++D+ K+E  K+ L  +PV     +++  +L
Sbjct: 313 LTV----EQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENL 368

Query: 675 VQLYANEKRILIRTSFANNIP---RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
             L A +K   +R +    +P   +++ D   ++QI  N++SNA+ FT  G Q+ +   +
Sbjct: 369 SALQAQQKG--LRFNLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQG-QVTVRVRY 425

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMG 790
              + +   V D+G+G+   EL+K    + Q+ +S   +   GTG+GL +++ +     G
Sbjct: 426 DEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGG 485

Query: 791 KFYIFSTPAKGTLIEIIF 808
              + S   KG+   +  
Sbjct: 486 DITVTSEQGKGSTFTLTI 503


>gi|312143225|ref|YP_003994671.1| PAS/PAC sensor signal transduction histidine kinase [Halanaerobium
           sp. 'sapolanicus']
 gi|311903876|gb|ADQ14317.1| PAS/PAC sensor signal transduction histidine kinase [Halanaerobium
           sp. 'sapolanicus']
          Length = 525

 Score =  323 bits (828), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 81/403 (20%), Positives = 166/403 (41%), Gaps = 8/403 (1%)

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG 472
           +        N   E      +  +  D    +        +  ++ +       + +R+ 
Sbjct: 92  VEVDVIPHQNYEQEIDYLLCLAVDITDKIKKENIFFRNRERYRTLFDQAPLAFVVYDRQT 151

Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL-DLRQTLEKITLG 531
            I+  N+   ++FG+  E++L K F + + ++  S +     ++ S            + 
Sbjct: 152 NIIDWNQRAEEIFGWEKEEVLDKNFNLLVPEDYYSEVTEMTEKLFSGFQNYNNNINKNVS 211

Query: 532 STKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
               E        I +    +         DI+E  + + K+    +   + S  ++ F 
Sbjct: 212 KDGNEIYCEWNNAIIRDQEDNIIEVISIARDITERLRAEEKIKKQNEEL-EYSKLRTQFF 270

Query: 590 ARVSHEIRTPLTAI---IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
           A +SHE++TPL  I   +   E             +   Y   I  +G  +L +VN+L+D
Sbjct: 271 ANISHELKTPLNLIFSSLQLLEFYLYNSQTYKDKDKINNYLKSIKNNGFRLLRLVNNLID 330

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706
           I++IE    +LH     + + + E ++ V  Y  EK    +     +   I  D  ++++
Sbjct: 331 ITRIEVDAFSLHRGNFDIVKLIREIVNTVSDYLEEKERDFKFICDLDSAVIACDPFNIER 390

Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
           + LN++SNA+ F+  G QII++        + L V+DTG+G+           F Q+  S
Sbjct: 391 VILNLISNAVKFSARGDQIILTLQKVDEA-ISLSVKDTGIGIEKENQAIIFDKFRQVDQS 449

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            + + EG+G+GL L K++++ + GK  + S     +  ++  P
Sbjct: 450 FKKKREGSGIGLSLVKSIIEMHGGKIELESDYGYYSNFKVFLP 492



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 13/155 (8%), Positives = 39/155 (25%), Gaps = 7/155 (4%)

Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDI 360
            +   +       F           D+ P+ F VY     +   N     +  ++  + +
Sbjct: 113 AVDITDKIKKENIFFRNRERYRTLFDQAPLAFVVYDRQTNIIDWNQRAEEIFGWEKEEVL 172

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
           +       LL        + +  +            +     +  +              
Sbjct: 173 DKNF---NLLVPEDY--YSEVTEMTEKLFSGFQNYNNNINKNVSKDGNEIYCEWNNAII- 226

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
            +Q    +    I  +  +    + K++ +  +L 
Sbjct: 227 RDQEDNIIEVISIARDITERLRAEEKIKKQNEELE 261



 Score = 38.9 bits (89), Expect = 4.0,   Method: Composition-based stats.
 Identities = 7/117 (5%), Positives = 24/117 (20%), Gaps = 3/117 (2%)

Query: 79  IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK 138
               + F    D    + + ++   +  G    +++      +    +      + + L 
Sbjct: 138 DQAPLAFV-VYDRQTNIIDWNQRAEEIFGWEKEEVLDKNFNLLVPEDYYSEVTEMTEKLF 196

Query: 139 RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA 195
                Y       +      +  +     I  +           I            
Sbjct: 197 SGFQNYNNNINKNVSKDGNEIYCEWNNAIIRDQEDNIIEV--ISIARDITERLRAEE 251


>gi|193212325|ref|YP_001998278.1| multi-sensor signal transduction histidine kinase [Chlorobaculum
           parvum NCIB 8327]
 gi|193085802|gb|ACF11078.1| multi-sensor signal transduction histidine kinase [Chlorobaculum
           parvum NCIB 8327]
          Length = 596

 Score =  323 bits (828), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 82/410 (20%), Positives = 166/410 (40%), Gaps = 34/410 (8%)

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKR---------KMEIEVMQLCSILEATSDG 464
                       E   Q  ++ +D   R+ +          ++  +   L  +L +  + 
Sbjct: 201 RIADAADRFLHGETEVQIPVKHDDEIGRLARAFNYLSEEIVRLTRKEEWLREVLSSIRES 260

Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
           I + N  G I+  N A S+LF          P           +        +       
Sbjct: 261 IIVTNASGEIVLANPAASRLFMIEGARKRSIPVDHIELPEMRELFVR-----VHARQSGI 315

Query: 525 LEKITLGSTKEE-KLLSLRIIIKKLPFS-SCYSLTMHDISEWKQEKNKLSHAKKIAEKES 582
             +     T    ++  +  +            L ++DI+  +  +              
Sbjct: 316 YNEELSVMTARGERVFKVTAVPVVKGEQFDGTVLVINDITRLRNLE-------------- 361

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
             + DF++ VSHE+RTPL +I G++E +               +   I +    +  ++N
Sbjct: 362 RTRRDFVSSVSHELRTPLASIKGYTETLLEGAVN--DPEHATAFLRIIQQESEQLTALIN 419

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702
           D+LD+S+IESGK+  +FEPV +  A+ + ++L +  A+ K + I  +  + +P +LAD  
Sbjct: 420 DVLDLSRIESGKIIYNFEPVDVKPALEKTMALFEPAASRKGVRIELNVPDGLPPVLADRN 479

Query: 703 SVKQIALNILSNAIHFTPSG-GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761
               +  N++ NA+ +  +  G++ +S        V + V D G+G+   +L++  + F 
Sbjct: 480 YFDIVMRNLIDNAVKYVDANRGRVRVSACKADQN-VAIEVSDNGIGIPQADLKRIFERFY 538

Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
           ++  ++     GTGLGL + K ++ A+ G   + S    G+   + FP+ 
Sbjct: 539 RVDKARSRELAGTGLGLSIVKHILLAHKGNVEVRSKTNSGSTFTVTFPIA 588


>gi|213401691|ref|XP_002171618.1| peroxide stress-activated histidine kinase mak1 [Schizosaccharomyces
            japonicus yFS275]
 gi|211999665|gb|EEB05325.1| peroxide stress-activated histidine kinase mak1 [Schizosaccharomyces
            japonicus yFS275]
          Length = 1777

 Score =  323 bits (828), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 121/693 (17%), Positives = 241/693 (34%), Gaps = 46/693 (6%)

Query: 144  YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                 L P    +L+  ++L+A        E +G  G     ++          +     
Sbjct: 690  SSIRRLAPFLAASLFHALNLSAPLPLCTTHERTGDCGCVFNDLSDASEHAEHASETESPD 749

Query: 204  FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
                  +     S              P   R+ +   + +  YA+    L++ +     
Sbjct: 750  PPRTRFVSHEKHSDTTPNASNGKHIFSPYGARILSHTHNKSHPYANGSIGLRSSQLRSRA 809

Query: 264  SEESSLPEQEDFHTINLNQYT-KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG---- 318
                S+P+Q  F      +       FG L  ++  +    ++          D      
Sbjct: 810  RAFFSVPKQTGFSLRFGRRLPVFANQFGNLLGSTGSTDRGETNSKKAKRKRVNDSATVPD 869

Query: 319  -----ENLTPETVDKCPIPFFVY--SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
                   L    +D  P+  F    + G + + N    L     +   +E          
Sbjct: 870  SFVPPSKLLRVIIDSIPVHVFTACATTGRITWVNERAALYCGVSAAALVEKQ------FA 923

Query: 372  APKLSD-NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
                 D N  +       SD        RL   +                 N     +  
Sbjct: 924  HIHPDDINLFLGKWKSVISDGDVFYKELRL---RRFDSQYRYFICRAIPLRNSKGVVIQY 980

Query: 431  NGIEPEDVDTRINKRKMEIEVM------QLCSILEATSDGIAIINREGIILSTNRAVSKL 484
             G   +  + ++ +++   +           S+ EA+   +  +N    I+  N      
Sbjct: 981  FGTMMDVHEQKMAEQEARKQSEAAANINDYRSLAEASPQIVFAVNPIDGIVYANAQWLSF 1040

Query: 485  FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS---- 540
             G   E+ +   F   +            T     +  +T        +   +       
Sbjct: 1041 SGLSFEESMGLGFLSVVHPEDRMKCLLPGTSSKFPNSDKTYAIEVRFRSTVGQYRWHLVK 1100

Query: 541  -LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
             + +       +  +  T  DI + K  + KL  A + A++  + K+ FL+ +SHEIRTP
Sbjct: 1101 CVCVNQFADTSNVLWLGTCTDIHDHKLLEEKLQEANREAQRMMNSKTRFLSNMSHEIRTP 1160

Query: 600  LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
            L  I G    + +           ++YA+ I +S   +L ++ND+LD+SK+E+G M L  
Sbjct: 1161 LVGITGMVNFLLDTNLTS----EQLDYAHTIQQSSEALLSVINDILDLSKVEAGMMKLTH 1216

Query: 660  EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHF 718
            E  S+   + +    +   A  K + +     +++P  ++ D   ++Q+ALN++ NA+ F
Sbjct: 1217 EAFSVRSMMEDTNETLSTLAFSKNLELNYVVDHDVPDMVIGDQARLRQVALNVIGNALKF 1276

Query: 719  TPSGGQIIISTTHTSN-----EEVILRVR--DTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
            +  G ++    +          E++L+    DTG G +  + EK  KPF QI +S   + 
Sbjct: 1277 SHEG-EVFCQCSVKPTQGLAPNEIMLQWECYDTGPGFSKEDEEKIFKPFSQIDDSLTRKH 1335

Query: 772  EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
             G+GLGL +++ +++ + G     S   +G+  
Sbjct: 1336 GGSGLGLVISRELIELHEGTMSCTSVKDRGSAF 1368



 Score = 46.9 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/205 (9%), Positives = 51/205 (24%), Gaps = 18/205 (8%)

Query: 93   GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWP 151
            G +  ++E      G  A  ++  +   +     I+        ++   + +Y +  L  
Sbjct: 897  GRITWVNERAALYCGVSAAALVEKQFAHI-HPDDINLFLGKWKSVISDGDVFYKELRLRR 955

Query: 152  IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK------RLDKKFS 205
             +  + Y      A+P+ +       +  FG +             +           + 
Sbjct: 956  FD--SQYRYFICRAIPLRNSKGVVIQY--FGTMMDVHEQKMAEQEARKQSEAAANINDYR 1011

Query: 206  HLHEIKKGHSSVEKEKYDIFSQQS---PPPHLRMKNKVSSLTEYYAHKDDV---LKTEKY 259
             L E              I    +       L  +  +        H +D    L     
Sbjct: 1012 SLAEASPQIVFAVNPIDGIVYANAQWLSFSGLSFEESMGLGFLSVVHPEDRMKCLLPGTS 1071

Query: 260  PLLTSEESSLPEQEDFHTINLNQYT 284
                + + +   +  F +       
Sbjct: 1072 SKFPNSDKTYAIEVRFRSTVGQYRW 1096


>gi|290509876|ref|ZP_06549247.1| sensory box histidine kinase/response regulator [Klebsiella sp.
           1_1_55]
 gi|289779270|gb|EFD87267.1| sensory box histidine kinase/response regulator [Klebsiella sp.
           1_1_55]
          Length = 897

 Score =  323 bits (828), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 97/501 (19%), Positives = 171/501 (34%), Gaps = 35/501 (6%)

Query: 326 VDKCPIPFFVYSH-GNLFYANPS--------FLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
           ++  P    +Y     L   N             L    +++ +      +     P   
Sbjct: 9   LNLLPSAVMIYDDRERLQAWNDKVALFYPTIAPWLAVGATIESLAEKFIDAGYNIDPGRQ 68

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
                  +   R    C         ++ +    + +                   +  +
Sbjct: 69  QTLREAIIRNCRQTNHC--------EVRQSGNRRIYIQHQRLADG-------GIVSLHTD 113

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR-K 495
             +    +R             E+   GI         L  N  +  + G          
Sbjct: 114 ITELDEARRSRHQLHDDFLFTAESIQIGIWDWQVSHDNLQVNDTLLAMVGQSRAQWRYPL 173

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR-----IIIKKLPF 550
            F + L                  +     E         +    +      + +     
Sbjct: 174 RFMLNLVHEDDRTTLQQAMIASQNEHMPVFECELRVQHPTQGWRWMLLSGQIVTLNMQQQ 233

Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
           +     T+ DI+  K  +     A K A + +  KS FLA +SHEIRTP+  I+G +++ 
Sbjct: 234 AERVIGTLQDITRRKAAELLAIEAAKEAREANEAKSAFLANMSHEIRTPMNGILGMTQLC 293

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
            +            EY + +  S   +L I+ND+LD S+IESGKM +  EP+ +   +  
Sbjct: 294 LDTPLTA----EQREYLSLVMSSAQSLLHIINDILDFSRIESGKMQVDEEPLEIRPFIQS 349

Query: 671 AISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
            I      A+EK I +    +  +P +L  D   ++QI  N+L NA+ FT  G  ++   
Sbjct: 350 LIRPHMPAASEKGIELLVDISPAVPEVLIVDGPRLRQILTNLLGNALKFTHQGEVLLAIA 409

Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
                     R+RDTG+G+   + +   + F Q  +S   R  GTGLGL ++  +V    
Sbjct: 410 PADDESRWRFRIRDTGIGIAPEKQKAIFEAFSQADSSTTRRYGGTGLGLTISARLVSLMG 469

Query: 790 GKFYIFSTPAKGTLIEIIFPL 810
           G+  + S P  G+      PL
Sbjct: 470 GELMVESQPGAGSEFAFTLPL 490


>gi|192361265|ref|YP_001984106.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like
            domain-containing protein protein [Cellvibrio japonicus
            Ueda107]
 gi|190687430|gb|ACE85108.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
            protein protein [Cellvibrio japonicus Ueda107]
          Length = 1260

 Score =  323 bits (827), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 115/593 (19%), Positives = 217/593 (36%), Gaps = 36/593 (6%)

Query: 231  PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG 290
            P  L++      L         ++  +K+  L     S  ++E   +    +        
Sbjct: 468  PSWLQVSTLGIGLALISLLSAYLITRQKHQDLLMRNQSRLQEEIHISTQALRKANDWLLK 527

Query: 291  TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFL 349
             ++   +   +        S        E      +D  P P ++    G+    N +F 
Sbjct: 528  EVEQRQQTQEQL------ESSQEVLRRREQELRSLLDNIPDPIWLKDIEGHYLNCNRAFA 581

Query: 350  LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
             L      + +         L +  ++        +   S             +      
Sbjct: 582  QLLGKTEQEIVGKR---EHELVSADIAQVFRRNDRVALGSAGPHR----HEQWLVAADGR 634

Query: 410  SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469
               +  +     +   +     GI  +  D      ++  E+ +     E ++ G  I +
Sbjct: 635  LHMLDTLKVAVRDADNQTYGILGIGRDITDKH----ELISELEKFKRFAEFSAQGFGIAS 690

Query: 470  REGIILSTNRAVSKLF--GYPVEDILRKPFTVFLEQNTPSVMNH-YLTEILSLDLRQTLE 526
             +G  L  N ++ ++       ED  ++ F ++        +      +++        +
Sbjct: 691  LKGETLYMNPSMRRMLSDRSTNEDDFKQQFWLYYPPELQVRVRDDIFPKVVEQGH---WQ 747

Query: 527  KITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKES 582
                    +      +     +             M DIS  K+ + +LS AK+ AE+ +
Sbjct: 748  GELAALHADGSDFPTQETFFVIRDDQGKPQYIGNVMTDISAQKETEAELSQAKEAAEEAA 807

Query: 583  SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
              KS FLA +SHEIRTPL A++G+++++              E    I  +   +L ++N
Sbjct: 808  RAKSRFLANMSHEIRTPLNAVLGYTQLLMRDPQLAGN---QRERLQLILNASQRLLGLIN 864

Query: 643  DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADL 701
            D+LD+SKIESG +NL  +   L + + E  +++   AN K + +        P  +  D 
Sbjct: 865  DVLDLSKIESGALNLRQDYFDLHQEMQEIHAIIAERANAKGLSLGLEIDFPAPNIVRGDR 924

Query: 702  RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761
            + + QI LN+L NA+ FT  G   ++ T H   + V   + DTG G+   ELE+    F 
Sbjct: 925  QKLGQILLNLLGNAVKFTHQGSVNLMLTRH--GDWVDFVISDTGPGIAPQELEQLFSAFR 982

Query: 762  QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
            Q    Q     GTGLGL L++ +     G   + S   +GT   +  PL   +
Sbjct: 983  QGQAGQDS--GGTGLGLTLSRHLAQGMGGSLELTSQLGEGTRAHLRLPLPSEA 1033



 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/244 (10%), Positives = 69/244 (28%), Gaps = 17/244 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTWY 144
            W  D  G+    +    + +G    +++G R  ++                L       
Sbjct: 564 IWLKDIEGHYLNCNRAFAQLLGKTEQEIVGKREHELVSADIAQVFRRNDRVALGSAGPHR 623

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            +   W +        +D   + +   + +  G  G G     R   D   L   L+ KF
Sbjct: 624 HE--QWLVAADGRLHMLDTLKVAVRDADNQTYGILGIG-----RDITDKHELISELE-KF 675

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY-------YAHKDDVLKTE 257
               E       +   K +      P     + ++ ++  ++       Y  +  V   +
Sbjct: 676 KRFAEFSAQGFGIASLKGETLYMN-PSMRRMLSDRSTNEDDFKQQFWLYYPPELQVRVRD 734

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
                  E+     +      + + +  ++ F  ++++  +     +     S     + 
Sbjct: 735 DIFPKVVEQGHWQGELAALHADGSDFPTQETFFVIRDDQGKPQYIGNVMTDISAQKETEA 794

Query: 318 GENL 321
             + 
Sbjct: 795 ELSQ 798


>gi|241664592|ref|YP_002982952.1| PAS/PAC sensor hybrid histidine kinase [Ralstonia pickettii 12D]
 gi|240866619|gb|ACS64280.1| PAS/PAC sensor hybrid histidine kinase [Ralstonia pickettii 12D]
          Length = 1436

 Score =  323 bits (827), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 97/518 (18%), Positives = 188/518 (36%), Gaps = 28/518 (5%)

Query: 307  NHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGG 365
                      +  +     ++  P P             N +F  +        +     
Sbjct: 551  QRRRAEETLAQQLSFQRALMEAVPFPLVAKDAAQRYVAVNAAFCNMFGQPRASLLGRTPQ 610

Query: 366  LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
               L      S  + I       S+ T          I      S  + +          
Sbjct: 611  ELGLYSVSNTSPLSDINQRAAQISESTR-----EELIIDTPDGQSRNVLYWIEPFHLPDG 665

Query: 426  ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR-----EGIILSTNRA 480
            +         +  + R  + + E    +L  + E+    +          +G I      
Sbjct: 666  QPAGTVASLVDISEIRDAQARAERLEQRLREVTESLPALVYQFELPPGEVQGRITYVAGK 725

Query: 481  VSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
                 G   +D+LR      + + Q+    +   +  + S      L+      + +  +
Sbjct: 726  AHDTLGVEPQDLLRYLSTPELLIFQDDRQRVLESV--LASARELTPLDLQFRHVSPDGSV 783

Query: 539  LSLRIIIKKLPFSSCYSL---TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
              L         +   ++    + D++  +++ + L  AK  AE     K  FLA +SHE
Sbjct: 784  RWLHARSIPHREADGRTVWNGYLSDVTTEREQADALEAAKNAAESALHAKDRFLAMMSHE 843

Query: 596  IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
            IRTP+  ++G  E+++  +          +  + +  SG  +L I++D+LD +KIE+G++
Sbjct: 844  IRTPMNGVLGLVELLQQTKL----EGEQKQMVSLVQDSGRALLHILDDILDYAKIEAGRL 899

Query: 656  NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSN 714
            ++      L       + L+   A+EK + +    A ++P  +  D   ++QI  N+LSN
Sbjct: 900  DISPTATDLRAVFDGTVGLLASRAHEKSLTVHVDVAADVPASVSVDSIRLRQILFNLLSN 959

Query: 715  AIHFTPSGGQIIISTTHT----SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
            AI FT +G  + +S   T        + + V DTG+G++         PF Q   S   R
Sbjct: 960  AIKFTDTGS-VRLSAQCTYAADDTAHLAICVSDTGIGISAEVQATLFAPFVQAERSTTRR 1018

Query: 771  GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
              GTGLGL +++ +     GK  + S   +GT + +  
Sbjct: 1019 YGGTGLGLAISRQLAGLMGGKLVMESAQGQGTAVTLEL 1056



 Score = 65.4 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/406 (8%), Positives = 109/406 (26%), Gaps = 25/406 (6%)

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
           L   F            ++ E+  +                  L                
Sbjct: 311 LLGIFPEYQNFLSRTLGLQFERVAVRDWADALDKAANGEVDILLGMSDQDARPAGFALTQ 370

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
           P+  +    +   +      L++ + K       +       +   +     +   D   
Sbjct: 371 PIDATPLVIVGRNDALTVAALSELSGKTVALPASDTLTAILRHNVPKIRLVSAGSVDNAL 430

Query: 320 NLTPE-----TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
           ++        T+   P+   +     + +  P  L +T   +  +    G  +       
Sbjct: 431 SMVASGKADFTIVNLPVADAL-----IRHHFPGELKVTGSANTIESIGVGVSARY----- 480

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF------IPFEKANQFPENM 428
            +    I   +    +   ++   +  ++ +    S +              A      +
Sbjct: 481 AALVPLINRALFAMPEGEQVSIRNKWLSVSYQLGPSASAVLGKFGPVAALVLAALVALFI 540

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
            Q  +  E+   R  +  +  ++    +++EA    +   +     ++ N A   +FG P
Sbjct: 541 KQMQLRRENHQRRRAEETLAQQLSFQRALMEAVPFPLVAKDAAQRYVAVNAAFCNMFGQP 600

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK----LLSLRII 544
              +L +        +  +          +  + ++  +  +  T + +    L  +   
Sbjct: 601 RASLLGRTPQELGLYSVSNTSPLSDINQRAAQISESTREELIIDTPDGQSRNVLYWIEPF 660

Query: 545 IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
                  +    ++ DISE +  + +    ++   + +      + 
Sbjct: 661 HLPDGQPAGTVASLVDISEIRDAQARAERLEQRLREVTESLPALVY 706



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/302 (8%), Positives = 74/302 (24%), Gaps = 23/302 (7%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS--DILHIDPNNHIGDLLKRQNTWYGKT 147
           DA      ++       G     ++G    ++    + +  P + I     + +    + 
Sbjct: 581 DAAQRYVAVNAAFCNMFGQPRASLLGRTPQELGLYSVSNTSPLSDINQRAAQISESTREE 640

Query: 148 TLWPI-EGTNLYV--PIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP-RALGKRLDKK 203
            +    +G +  V   I+   LP        +       +   +   +      + + + 
Sbjct: 641 LIIDTPDGQSRNVLYWIEPFHLPDGQPAGTVASLVDISEIRDAQARAERLEQRLREVTES 700

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL--TEYYAHKDDVLKTEKYPL 261
              L    +      + +    + ++          +     T       D  +     +
Sbjct: 701 LPALVYQFELPPGEVQGRITYVAGKAHDTLGVEPQDLLRYLSTPELLIFQDDRQRVLESV 760

Query: 262 LTSEESSLPEQEDFHTI--NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
           L S     P    F  +  + +              +     +  + +  +      +  
Sbjct: 761 LASARELTPLDLQFRHVSPDGSVRWLHAR-SIPHREADGRTVWNGYLSDVTTEREQADAL 819

Query: 320 NLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
                  +               +A   FL +  ++    +    GL  LL   KL    
Sbjct: 820 EAAKNAAESA------------LHAKDRFLAMMSHEIRTPMNGVLGLVELLQQTKLEGEQ 867

Query: 380 AI 381
             
Sbjct: 868 KQ 869


>gi|156742601|ref|YP_001432730.1| multi-sensor signal transduction histidine kinase [Roseiflexus
           castenholzii DSM 13941]
 gi|156233929|gb|ABU58712.1| multi-sensor signal transduction histidine kinase [Roseiflexus
           castenholzii DSM 13941]
          Length = 641

 Score =  323 bits (827), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 94/379 (24%), Positives = 162/379 (42%), Gaps = 33/379 (8%)

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           +LE+ S  + +++ +  I+  NRA   + G    +++ KP    L       +      I
Sbjct: 248 VLESMSQSVIVLDDDNRIVDINRAAQHVIGCTAAEVIGKPIRQALS--RWPQVLDRYYNI 305

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA-- 574
           + L+    LE        +  +  LR    +L       +  HDI+  KQ +  L     
Sbjct: 306 VELNEEVQLEIEGRPLVLDVLISPLRDRNGRLR---GRLIVWHDITRLKQIEEVLRQRND 362

Query: 575 ------------KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
                       +  AE     KS FLA +SHE+RTPL+AI+G+++ +        G   
Sbjct: 363 ELTALQQTLMVARDQAEAAHRAKSAFLAHMSHEVRTPLSAILGYTD-LIRLDLTRRGQSV 421

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
           Y E    I  S   +L ++N++LD+SKI++G+M L+ E  S++  V       +  A   
Sbjct: 422 YQEELEAIHASAQHLLTMINNILDLSKIDAGRMPLYIELFSIEALVHNVTQTARPLAARN 481

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT---------- 732
              +    A +   + +D   ++Q+ LN+LSNA  FT +G  I +               
Sbjct: 482 GNSLTVIRAPDADLMTSDKTKIRQVLLNLLSNAAKFTENGA-ISLRIWRELSLSPAMKAI 540

Query: 733 SNE--EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
            +    ++  + DTG+G+    L    + F +I ++   R  GTGLGL +++       G
Sbjct: 541 DDGADWIVFEIADTGIGIAPEHLPLLFQDFSRIEDADHQRYGGTGLGLAISRQFCRLMGG 600

Query: 791 KFYIFSTPAKGTLIEIIFP 809
              + S P KGT   +  P
Sbjct: 601 DITVASAPGKGTTFTVRLP 619



 Score = 54.3 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 25/185 (13%), Positives = 59/185 (31%), Gaps = 14/185 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD--ILHIDPNNHIGDLLKRQNTWYGK 146
           +D    + +I+      IG  A ++IG  +          +D   +I +L         +
Sbjct: 259 LDDDNRIVDINRAAQHVIGCTAAEVIGKPIRQALSRWPQVLDRYYNIVEL--------NE 310

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                IEG  L + + ++  P+  RN    G     + H          + ++ + + + 
Sbjct: 311 EVQLEIEGRPLVLDVLIS--PLRDRNGRLRGR--LIVWHDITRLKQIEEVLRQRNDELTA 366

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
           L +         +  +   S         ++  +S++  Y       L      +   E 
Sbjct: 367 LQQTLMVARDQAEAAHRAKSAFLAHMSHEVRTPLSAILGYTDLIRLDLTRRGQSVYQEEL 426

Query: 267 SSLPE 271
            ++  
Sbjct: 427 EAIHA 431



 Score = 39.6 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 9/212 (4%), Positives = 44/212 (20%), Gaps = 28/212 (13%)

Query: 325 TVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
            ++       V      +   N +   +    + + I      +       L     I  
Sbjct: 248 VLESMSQSVIVLDDDNRIVDINRAAQHVIGCTAAEVIGKPIRQALSRWPQVLDRYYNIVE 307

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
           +                  ++      L +  +     ++      +  +  +    +  
Sbjct: 308 L-------------NEEVQLEIEGRP-LVLDVLISPLRDRNGRLRGRLIVWHDITRLKQI 353

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
           +  +     +L ++ +     +   ++                     +      V    
Sbjct: 354 EEVLRQRNDELTALQQTL---MVARDQ----------AEAAHRAKSAFLAHMSHEVRTPL 400

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
           +        +   L+   +   ++        
Sbjct: 401 SAILGYTDLIRLDLTRRGQSVYQEELEAIHAS 432


>gi|288556019|ref|YP_003427954.1| two-component sensor histidine kinase [Bacillus pseudofirmus OF4]
 gi|288547179|gb|ADC51062.1| two-component sensor histidine kinase [Bacillus pseudofirmus OF4]
          Length = 599

 Score =  323 bits (827), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 83/365 (22%), Positives = 156/365 (42%), Gaps = 27/365 (7%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            +  E  QL  IL + +DG+  ++R+G ++ TN    +       +      +  L +  
Sbjct: 250 ALNQEKEQLSRILVSMADGVITLDRKGQVIVTNPPAERFMQSWFYEQGINDDSSVLPE-- 307

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF-SSCYSLTMHDISEW 564
              +      ++S++  Q +E        + +  ++ +               + D++E 
Sbjct: 308 --AVEQLFQRVVSVEKEQMIEIDV-----QGRSWAILMTPLYDREYVRGAVAVIRDMTEE 360

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           ++                  + DF+A VSHE+RTP++ + G+SE I +   G        
Sbjct: 361 RRH--------------DKLRKDFIANVSHELRTPVSMLQGYSEAIIDDIAG--SEEDKK 404

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           E+A  I      +  +VN+LLD++++E+G + LH E V L       +   Q YA ++ +
Sbjct: 405 EFAKIIYDESLRMGRLVNELLDLARMEAGHIELHMEAVELGAFSDRIVRKFQGYAKDEGV 464

Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744
            +R     +      D   ++Q+  N++ NAI  T   G++ +         V   V DT
Sbjct: 465 ALRLDHVEDGYTNSFDPDRIEQVLTNLIHNAIRHTGENGRVTVKVRSNEYG-VKFDVIDT 523

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G G+   +L    + F +   ++     GTGLGL +AK +VDA+ G+  + S   +GT  
Sbjct: 524 GSGIPEEDLPYVFERFYKADKARTRARGGTGLGLAIAKNIVDAHKGQISVHSKIDEGTTF 583

Query: 805 EIIFP 809
               P
Sbjct: 584 SFFIP 588


>gi|115379358|ref|ZP_01466465.1| response regulator/sensor histidine kinase [Stigmatella aurantiaca
           DW4/3-1]
 gi|310825019|ref|YP_003957377.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|115363640|gb|EAU62768.1| response regulator/sensor histidine kinase [Stigmatella aurantiaca
           DW4/3-1]
 gi|309398091|gb|ADO75550.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 850

 Score =  323 bits (827), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 112/779 (14%), Positives = 245/779 (31%), Gaps = 82/779 (10%)

Query: 72  NTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN 131
           +TF   P           D +  +  +        G  + + +G      ++ +      
Sbjct: 112 STFRLWPDTPPR------DEYHAITYLEPA-----GIRSPEAMG--FDMFTEPIRRAAME 158

Query: 132 HIGD----LLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187
                    L  +     +      EG  +YVP+                + G  +    
Sbjct: 159 RAWQTGAPALSGKVMLGQEAAASGQEGFVMYVPV----------------YEGHSLPETA 202

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247
           +                + L           +  + ++  Q P P   + +  +SL + +
Sbjct: 203 QKRWQLLEGFVYSPFSATPLFSGLFTPLLQTRITFRLYDGQEPKPEALLYDSSASLEKTH 262

Query: 248 AHKDDVLKTE------------------KYPLLTSEESSLPEQEDFHTINLNQYTKKQYF 289
           A       ++                  +  L+ +   S+       ++ +  + + Q  
Sbjct: 263 ARPVFTSSSQLEVAGRPWTLVFFSQPDFEQSLMATWVPSVGGIGTLMSLLVFAFARSQQN 322

Query: 290 GTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH--GNLFYANPS 347
              +    E+             A  +       +   + P    +         +AN +
Sbjct: 323 ARKRAEDNEAERAWLLSRERLARAETEAQRTHLQDIFMQAPAIIAILGGPQHVFEFANTA 382

Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
              +  ++  + +      +                          +    R        
Sbjct: 383 CQKVLGHR--ELLGKPIHEAVPDLKQHGPALLDKAYHTGKALSGREVCLPLRYTLGGRIE 440

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ-----LCSILEATS 462
           E      F P    +   + M     E  D      + ++  E  +     L +I +   
Sbjct: 441 ERYWDFFFQPRRMPDGAVDGMMVFAFEVTDQLQARQEVELSREEARRSAAQLQAITDTLP 500

Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522
             +A ++        NRA    FG   E++L K    F+       +   L + LS    
Sbjct: 501 ALVAYLDLAERYRFANRAYESWFGVKPEEVLGKTAAEFVGPEAYEGVKEKLQQALSG--- 557

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNKLSHAKKIA 578
           +T+        +  + + ++        +        +  HD++E ++E+  + +     
Sbjct: 558 ETIRYEVELQVRGGRKIYMQSNYLPDRDAQGHVRGIVVLAHDLTERRKEEEIVRN----- 612

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP---RYIEYANYIDRSGN 635
                 + +FL+  SHE++TPLT +    + +          P   +   +     +  N
Sbjct: 613 --AVRLRDEFLSVASHELKTPLTPLSLKLQALARAVEHEPETPFTQKVRSHVEAGRKQLN 670

Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695
            +  ++ DLLD+S+I SG+M L +EPV     V E ++ ++  A      +      ++ 
Sbjct: 671 RLSVLIGDLLDVSRISSGQMRLRWEPVDFAVLVREVVARLEPEALRAESPLNVEAPGSLM 730

Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755
               D    +Q+  N+L+NAI +  +G  I +         V+LRV+D G+G+      +
Sbjct: 731 G-STDRLRFEQVVENLLTNAIKYG-AGKSIQL-VLKEEAGGVVLRVKDHGIGIAPEHQAR 787

Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
             + F +  +  +    G GLGL + + +V+   G   + S P +G    +  P    S
Sbjct: 788 IFERFERAVS--ERNYGGLGLGLYITRTIVELLGGTIRVQSEPGQGAAFTVDLPREPPS 844


>gi|150018205|ref|YP_001310459.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
            beijerinckii NCIMB 8052]
 gi|149904670|gb|ABR35503.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
            beijerinckii NCIMB 8052]
          Length = 1036

 Score =  323 bits (827), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 115/752 (15%), Positives = 252/752 (33%), Gaps = 40/752 (5%)

Query: 85   FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144
            F W +  +G +   ++ +    G  + + +G    D+   +H    N I +++     W 
Sbjct: 264  FAWKL--NGSITYWNKGVELMYGYTSDEAVGCISHDLLKTVHSVDINTIKEIILEDGVWS 321

Query: 145  GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            G+      +GT   + I+ +         +                       K    + 
Sbjct: 322  GEIEHTKKDGT--KLIIETSHQIFVDEYGQLVVLE---TNRDITERKKLEEEIKHQKAEL 376

Query: 205  SHLHEIKKGHSSVEKE------KYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
              + +       +               +     +LR  +  +    Y  + D++ K + 
Sbjct: 377  DDIIQSIDDALVIYDSNKNCYLTNKSAEEYFKGTNLRRISNPNHFKFYDLNGDEISKEKM 436

Query: 259  YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL----SHRNHPSLSAY 314
                      +                      + +++      +       +       
Sbjct: 437  TISKVFRGEVVINDIMTLKNATTTKHISLNGRPIYDSNGNIKFAVLCCHDITHDIEAQML 496

Query: 315  FDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLL-LTKYKSVDDIEIAGGLSTLLDA 372
             ++        +       F+++  N +   N      +        I      +   D 
Sbjct: 497  IEQQNKKLEAIISSASDGMFLFNPDNSVTLLNKESEKFIYDINGYKSIGDTCKDTKYYDK 556

Query: 373  PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
                      P +  ++  +       + T +   +     +       +     + +  
Sbjct: 557  DGNLLEVNDLPGIKLKNSESIKNF---IITAKGPDKTIHY-SVSACPIYDDRKNLITKLI 612

Query: 433  IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS-KLFGYPVED 491
               +  +   N+RK+  +  QL +IL+   D + + N++G I   N+    ++      +
Sbjct: 613  SAHDITERFNNERKILEQKEQLQAILDNMQDSVYVFNKDGEIFLKNKMAQKRMSHIGDYN 672

Query: 492  ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE-EKLLSLRIIIKKLPF 550
                    FL+ +   +M   +     +      E        E E+ +S+         
Sbjct: 673  HPNDTNKKFLDLDGSEIMAEDIPHCKIIRGEYVKEYFMKIKIGECEQYVSVSGTPVFDKE 732

Query: 551  SSCYSLTM--HDISEWKQEKNKLSHAKKIAEKESS-----------HKSDFLARVSHEIR 597
             +     +   DI+++ + +  L   +    +               K +FL+ +SHE R
Sbjct: 733  GNFAYGIINSRDITDFMENQKALEKIQIKLLEAEREKNDTLEKALEMKDEFLSLISHEFR 792

Query: 598  TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
            TPL  I    + I +       + R  +Y   I  +    L +VN++LDI++  +G++ +
Sbjct: 793  TPLNVINSAIQAI-DYFCSEELSDRLKKYLRMIRLNSFRQLRLVNNILDITRANAGRIKV 851

Query: 658  HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
            +   + +       +  V  YA++K I I  S +     +  D    ++I LN+LSNAI 
Sbjct: 852  NKSNIDIIFMTKAIVDSVYTYASQKSIDIIFSSSVKQKIVGIDDEKYERILLNLLSNAIK 911

Query: 718  FTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
            FTP G  I +      +  + + V+D G+G+   + +   + FGQ+ +S   + EGTG+G
Sbjct: 912  FTPEGKSISVKILSRRDG-ICIEVKDKGIGIPQEKADIIFERFGQVDSSLSRQAEGTGIG 970

Query: 778  LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            L L K  V+A  G   + S   +G+   I  P
Sbjct: 971  LSLVKKFVEAIGGSISLKSKVGRGSAFSIFLP 1002



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 39/294 (13%), Positives = 92/294 (31%), Gaps = 16/294 (5%)

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIA 363
                 +    +       + ++      F +  +G++ Y N    L+  Y S + +   
Sbjct: 235 IEQQAEIIKQQNYTLKRQADMLNLSREAIFAWKLNGSITYWNKGVELMYGYTSDEAVGCI 294

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
                LL      D N IK ++L   +    +               L +        ++
Sbjct: 295 SH--DLLKTVHSVDINTIKEIIL---EDGVWSGEIEH---TKKDGTKLIIETSHQIFVDE 346

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           + + +       +  + +  + +++ +  +L  I+++  D + I +       TN++  +
Sbjct: 347 YGQLV-VLETNRDITERKKLEEEIKHQKAELDDIIQSIDDALVIYDSNKNCYLTNKSAEE 405

Query: 484 LF-GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK-EEKLLSL 541
            F G  +  I       F + N   +    +T          +  I         K +SL
Sbjct: 406 YFKGTNLRRISNPNHFKFYDLNGDEISKEKMTISKVFRGEVVINDIMTLKNATTTKHISL 465

Query: 542 RIIIKKLPFSSCYSLTM--HDISEWKQEKN--KLSHAKKIAEKESSHKSDFLAR 591
                     +     +  HDI+   + +   +  + K  A   S+    FL  
Sbjct: 466 NGRPIYDSNGNIKFAVLCCHDITHDIEAQMLIEQQNKKLEAIISSASDGMFLFN 519



 Score = 68.5 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 28/202 (13%), Positives = 65/202 (32%), Gaps = 17/202 (8%)

Query: 402 TIQWNR-ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM-------- 452
             Q++     +    I      +  E      +  E  +  ++++K+E +          
Sbjct: 189 EYQYDGFSRGITYWRISLIPIFEEREIKYCVVMLTETTEQVVHRKKIEQQAEIIKQQNYT 248

Query: 453 --QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
             +   +L  + + I      G I   N+ V  ++GY  ++ +       L+      +N
Sbjct: 249 LKRQADMLNLSREAIFAWKLNGSITYWNKGVELMYGYTSDEAVGCISHDLLKTVHSVDIN 308

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM---HDISEWKQE 567
                IL   +          + K+   L +    +         + +    DI+E K+ 
Sbjct: 309 TIKEIILEDGVWSG---EIEHTKKDGTKLIIETSHQIFVDEYGQLVVLETNRDITERKKL 365

Query: 568 KNKLSHAKKIAEKESSHKSDFL 589
           + ++ H K   +       D L
Sbjct: 366 EEEIKHQKAELDDIIQSIDDAL 387


>gi|301022112|ref|ZP_07186038.1| PAS domain S-box [Escherichia coli MS 69-1]
 gi|300397708|gb|EFJ81246.1| PAS domain S-box [Escherichia coli MS 69-1]
          Length = 778

 Score =  323 bits (827), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 86/438 (19%), Positives = 179/438 (40%), Gaps = 21/438 (4%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L +           L  +Q     +     I   +  +         ++ E
Sbjct: 81  EESRQRLSRLVQKLEEMRERDLSL-NVQLKDNIAQLNQEIAVREKAEAELQETFGQLKIE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             +    + ++E +   L S L+A+ D +   N +      NRA+  L G   + ++   
Sbjct: 140 IKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCY 554
                     + +     ++   ++  T E+        +    +R +    ++      
Sbjct: 200 PADVYSPEAAAKVIETDEKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGL 259

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+        +   E+ S  K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 260 MGFGRDITERKR-------YQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE 312

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     +Y   I  S   + +I ND++D+ K+E  K+ L  +PV     +++  +L
Sbjct: 313 LTA----EQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENL 368

Query: 675 VQLYANEKRILIRTSFANNIP---RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
             L A +K   +R +    +P   +++ D   ++QI  N++SNA+ FT  G Q+ +   +
Sbjct: 369 SALQAQQKG--LRFNLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQG-QVTVRVRY 425

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMG 790
              + +   V D+G+G+   EL+K    + Q+ +S       GTG+GL +++ +     G
Sbjct: 426 DEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGNPATGTGIGLAVSRRLAKNMGG 485

Query: 791 KFYIFSTPAKGTLIEIIF 808
              + S   KG+   +  
Sbjct: 486 DITVTSEQGKGSTFTLTI 503


>gi|312879107|ref|ZP_07738907.1| PAS/PAC sensor hybrid histidine kinase [Aminomonas paucivorans DSM
           12260]
 gi|310782398|gb|EFQ22796.1| PAS/PAC sensor hybrid histidine kinase [Aminomonas paucivorans DSM
           12260]
          Length = 540

 Score =  323 bits (827), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 94/373 (25%), Positives = 151/373 (40%), Gaps = 19/373 (5%)

Query: 449 IEVMQLCSIL---EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            +  +  S+    E     I I +  G I   N    +L GY  ED+L K   V      
Sbjct: 8   EKSRRFRSLFLAAEHNPSAIVITDAAGRIEYVNPRFQELTGYTAEDVLGKTPRVLQSGLH 67

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDI 561
                  L   L+    +  +       K  +L      I  +         Y     D+
Sbjct: 68  DRGFYEELWGTLARG--EVWKGEFCNRRKTGELYWESAAIAPVRDRKGVVANYVAVKEDV 125

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           +E K  + +L  AK+ AE  +  KS FLA +SHEIRTP+  I+G  E+++        +P
Sbjct: 126 TESKVLREELLRAKEDAETANEAKSVFLASMSHEIRTPMNGILGMLELLRQTDL----DP 181

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
           +  EY   +  S   ++  +N +L+ S++++ +  L      L   V     L  L A E
Sbjct: 182 QQEEYLRIVRESAQTLMHFLNQVLEYSRLQANRTELESLDFDLMCTVGPLFELFALRARE 241

Query: 682 KRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH---TSNE-E 736
           K +         +P  +  D   ++QI  N+L NA+ FT  G  I +S            
Sbjct: 242 KGLETVLDLDPQVPPRVRGDPLRLRQILTNLLDNALKFTEKG-WIALSIRRFPPEDGGLW 300

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           +   V DTG+G+   +  +  + FGQ+  S   R  G+GLGL + + MV    G   + S
Sbjct: 301 LEFGVVDTGIGIPREKRHRIFQGFGQLDRSTTRRYGGSGLGLAIVRQMVSLWGGFLSLES 360

Query: 797 TPAKGTLIEIIFP 809
              KG+   +  P
Sbjct: 361 EEGKGSSFHVRLP 373



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/243 (11%), Positives = 59/243 (24%), Gaps = 18/243 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147
            DA G ++ ++    +  G  A  ++G     +   LH       +   L R   W G+ 
Sbjct: 30  TDAAGRIEYVNPRFQELTGYTAEDVLGKTPRVLQSGLHDRGFYEELWGTLARGEVWKGEF 89

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                 G         A  P+  R    + +    +          R    R  +     
Sbjct: 90  CNRRKTGELY--WESAAIAPVRDRKGVVANY--VAVKEDVTESKVLREELLRAKEDAETA 145

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
           +E K    +    +                     L      +   L  ++   L     
Sbjct: 146 NEAKSVFLASMSHEIRTPMN-------------GILGMLELLRQTDLDPQQEEYLRIVRE 192

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
           S      F    L     +     L++   +    +            ++G     +   
Sbjct: 193 SAQTLMHFLNQVLEYSRLQANRTELESLDFDLMCTVGPLFELFALRAREKGLETVLDLDP 252

Query: 328 KCP 330
           + P
Sbjct: 253 QVP 255



 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/232 (9%), Positives = 64/232 (27%), Gaps = 18/232 (7%)

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
            L +             +  P    +    G + Y NP F  LT Y + D +     +  
Sbjct: 4   RLPSEKSRRFRSLFLAAEHNPSAIVITDAAGRIEYVNPRFQELTGYTAEDVLGKTPRV-- 61

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
                 L D    + +    +              +         +       ++     
Sbjct: 62  --LQSGLHDRGFYEELWGTLARGEVWKGE---FCNRRKTGELYWESAAIAPVRDRKGVVA 116

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG--IAIINREGIILS-TNR--AVSK 483
               ++ +  ++++ + ++           E  ++   + + +    I +  N    + +
Sbjct: 117 NYVAVKEDVTESKVLREELLRAKED----AETANEAKSVFLASMSHEIRTPMNGILGMLE 172

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
           L      D  ++ +   +   +   + H+L ++L     Q           +
Sbjct: 173 LLRQTDLDPQQEEYLRIVR-ESAQTLMHFLNQVLEYSRLQANRTELESLDFD 223


>gi|310642599|ref|YP_003947357.1| sensory histidine protein kinase [Paenibacillus polymyxa SC2]
 gi|309247549|gb|ADO57116.1| Sensory histidine protein kinase [Paenibacillus polymyxa SC2]
          Length = 484

 Score =  323 bits (827), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 82/380 (21%), Positives = 157/380 (41%), Gaps = 25/380 (6%)

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
            +     R +  E   L S+L + SD +   +R G I+ TN     L     +   +   
Sbjct: 115 TELEATIRSLNEEKNHLSSVLRSMSDAVFTFDRSGQIILTNPPAQSLLDIWKKLEWQGRD 174

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT 557
                 + P  +      ++                K+         +            
Sbjct: 175 LEEFGASVPEPLLPLFHTVMDRGEDVGDYIHV----KKGSWSVQMAPLYTDNAIRGAVAV 230

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
           + DI+E  + +                +SDF+A VSHEIRTPL+ + G+SE + +   G 
Sbjct: 231 LRDITEEVKLE--------------KMRSDFVANVSHEIRTPLSMMQGYSEALLDGMAG- 275

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
                  E    I      +  +V DLLD++++E+G  +++ + V ++E +        +
Sbjct: 276 -SPEESEELVQVIHDESLRMGRLVKDLLDLARMEAGHTDMYRQEVDVNELIERVHRKFTV 334

Query: 678 YANEKRILIRT-SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS---TTHTS 733
            + E+ +++       ++    AD   ++Q+  N+L NA   TPSG ++ I+        
Sbjct: 335 RSKERGLILDYYEPDQHLLLPEADEDRLEQVLTNLLDNAFRHTPSGKKVTIAADQIRGER 394

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGEGTGLGLPLAKAMVDANMGKF 792
           NE + +R++D GVG+ + +L      F +   ++     +GTGLGL + + +V+A+ G  
Sbjct: 395 NELIRIRIKDEGVGIASEDLPYIFDRFYKADKARVRGEDKGTGLGLAIVRNIVEAHGGSV 454

Query: 793 YIFSTPAKGTLIEIIFPLYD 812
              S   +GT   I+ P+ +
Sbjct: 455 SAASVLGEGTEFTILLPISN 474


>gi|256827870|ref|YP_003156598.1| PAS/PAC sensor signal transduction histidine kinase [Desulfomicrobium
            baculatum DSM 4028]
 gi|256577046|gb|ACU88182.1| PAS/PAC sensor signal transduction histidine kinase [Desulfomicrobium
            baculatum DSM 4028]
          Length = 1080

 Score =  323 bits (827), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 116/766 (15%), Positives = 244/766 (31%), Gaps = 71/766 (9%)

Query: 88   NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL-KRQNTWYGK 146
             +D  G    +S    KT G    +++      +     +         L     T + +
Sbjct: 327  KVDVEGRFLYVSPAYCKTFGKTEDELLCSTFMPLIHADDLAATEEAMKALFVPPYTAHME 386

Query: 147  TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF-- 204
                 ++G   +  +  +   I     E     G G             L ++ +++F  
Sbjct: 387  QRAMTVDG---WRWLAWSDSAILGPGGEIEAIIGVG--RDISERKQTEELLRQSEERFAK 441

Query: 205  ---SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
               S    +     +  +             H + +    +  E     D   + E   +
Sbjct: 442  AFHSSPAPLIISDIATGRFIDVNARWVDMLGHAKEEQIGRTSKEVGIWADPRQRDEAIQI 501

Query: 262  LTSEESSLPEQEDFHTINLNQYTKKQYFGT--LQNNSKESFEYLSHRNHPSLSAYFDEGE 319
            L  E S      +F T      +         LQ+        L +           + E
Sbjct: 502  LRKEGSFKEFPIEFLTKTGEIRSALWSAEIIILQDREVMLSLILDYTERKRAEEALRKSE 561

Query: 320  NLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
             L    +D     F+     G L   +PS + L  Y+  +++               +  
Sbjct: 562  KLYRSVIDNIHDVFYRTDAEGRLIMVSPSGVRLLAYEHAEEMLGRPNEEFWF-----APA 616

Query: 379  NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
                 +   + D         L   + + E  L  T       ++    +   GI  +  
Sbjct: 617  ARQAFLERIQKDGFVADFEVVL--KRKDGEPVLVATSSGLY-RDEAGIVLGVEGIFRDIT 673

Query: 439  DTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILRKPF 497
            + +  + ++     +   + + + D I++ + + G+++  N A + L GY   +++ K  
Sbjct: 674  ERKRTEERLRQSEDKFSRLFKLSPDAISLSDPQSGLLVEINDAYADLTGYGQAELIGKTS 733

Query: 498  TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT 557
                    P      + E+      + +E           L S+   +  +         
Sbjct: 734  VELGLFVNPQSRRRVVEELERTGHVKNMEVEFRRKNGSHVLCSVSGQLMTIGQERFLLAV 793

Query: 558  MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR--- 614
            + D++E ++ +  +  ++K+            A ++HEI  PL  I+  ++ +  +    
Sbjct: 794  IRDVTELRRMQEMMIQSEKMVSVGGIA-----AGIAHEINNPLGIIVQTAQNLVQRTRPD 848

Query: 615  ------------FGPLGNPRYIE------YANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
                               RY++      +   +  +     DI+  +LD     S +  
Sbjct: 849  FQKNIEVAESIGLDMALLERYMQARKILSFVQDMQAAALRAADIIRHMLDF----SRRSE 904

Query: 657  LHFEPVSLDEAVSEAISL------VQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710
                  ++   V  A++L      ++   + KRI I   +A ++         ++Q+ LN
Sbjct: 905  SRRASCAVPAIVDRAVALAQNDYDLKKSFDFKRIRIVKEYAPDLAGAECTETELEQVFLN 964

Query: 711  ILSNAIHFT------PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764
            +L NA          P    I+I  ++ ++  V     D G GMT     +  +PF    
Sbjct: 965  LLRNAAQAMSMDDSVPVDPMIVIRLSNVASG-VRCEFEDNGPGMTAEVRRRVFEPFYTTK 1023

Query: 765  NSQQIRGEGTGLGLPLAKAMVDA-NMGKFYIFSTPAKGTLIEIIFP 809
                    GTGLGL ++  +V   + GK ++ S P  GT   I  P
Sbjct: 1024 PPGI----GTGLGLSVSYFIVTRGHGGKMWVESAPGAGTRFIIELP 1065



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/140 (12%), Positives = 41/140 (29%), Gaps = 6/140 (4%)

Query: 87  WNIDAHGYLKEISEELPKTIGNY-AFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
           +  DA G L  +S    + +    A +M+G    +              + +++      
Sbjct: 576 YRTDAEGRLIMVSPSGVRLLAYEHAEEMLGRPNEEFW--FAPAARQAFLERIQKDGFVAD 633

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
              +   +     V +  ++           G  G  I              ++ + KFS
Sbjct: 634 FEVVLKRK-DGEPVLVATSSGLYRDEAGIVLGVEG--IFRDITERKRTEERLRQSEDKFS 690

Query: 206 HLHEIKKGHSSVEKEKYDIF 225
            L ++     S+   +  + 
Sbjct: 691 RLFKLSPDAISLSDPQSGLL 710


>gi|15614144|ref|NP_242447.1| two-component sensor histidine kinase [Bacillus halodurans C-125]
 gi|10174198|dbj|BAB05300.1| two-component sensor histidine kinase [Bacillus halodurans C-125]
          Length = 594

 Score =  323 bits (827), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 87/393 (22%), Positives = 164/393 (41%), Gaps = 25/393 (6%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
                                +   N  ++  E  QL  IL + +DG+  +++ G ++ T
Sbjct: 220 VPILTHDEIGQLAIAFNRMRRELNRNVTELNQEKEQLSRILSSMADGVITLDKRGKVMVT 279

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
           N    +       +   +      +   P  ++    ++++L+  Q  E    G      
Sbjct: 280 NPPAERFIQAWHYE---QGLVPSEKNELPQAIHQLYQQVVALESEQMTELDVQGR----S 332

Query: 538 LLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
              L   +    +       + D++E ++                  + DF+A VSHE+R
Sbjct: 333 WAILMTPLYDNSYVRGAVAVIRDMTEERRH--------------DKLRKDFIANVSHELR 378

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TP++ + G+SE I +   G   +    E A  I      +  +VN+LLD++++E+G ++L
Sbjct: 379 TPISMLQGYSEAIIDDIAGT--DQEKKELAKIIYDESLRMGRLVNELLDLARMEAGHIDL 436

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAI 716
            +E + +           Q  A E+++ +   +  +   RI  D   ++Q+  N+LSNAI
Sbjct: 437 SYEEIEVKTFCERITRKFQGLAKEQQLTLDFIYRGDEGKRIQVDPDRLEQVLTNLLSNAI 496

Query: 717 HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
             T  GG + ++     N  V + V DTG G+   +L    + F +   ++     GTGL
Sbjct: 497 RHTDPGGTVQLACHVMENG-VKIDVTDTGTGIPEEDLPYVFERFYKADKARTRGRSGTGL 555

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GL + K +VDA+ G+  + S   +GT     FP
Sbjct: 556 GLAIVKNIVDAHSGEISVHSKQQEGTTFTAFFP 588


>gi|153828803|ref|ZP_01981470.1| sensor histidine kinase FexB [Vibrio cholerae 623-39]
 gi|148875679|gb|EDL73814.1| sensor histidine kinase FexB [Vibrio cholerae 623-39]
          Length = 785

 Score =  323 bits (827), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 87/387 (22%), Positives = 165/387 (42%), Gaps = 19/387 (4%)

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
            +E E       + ++      L S ++A+ D I   N +G     NRA+ +L G    +
Sbjct: 135 DLENEVYQREKTQVELAERTALLRSFIDASPDLIYYRNAKGEFSGCNRAMEELTGKRESE 194

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
           ++         +     +     ++ + +   T E+        +    LR +       
Sbjct: 195 LVGLTPWDVYRKEIAQSIVETDQQVFNNNTAITYEQWLEYPDGRKSFFELRKVPFYNKDG 254

Query: 552 S--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                     DI+E K+ +  L       EK S  K+ F++ +SHE+RTPL  I+G S +
Sbjct: 255 RHLGLVGFGRDITERKRHEESL-------EKASRDKTTFISTISHELRTPLNGIVGLSRM 307

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           + +            ++   I+ S   + +I ND++D+ K +  K+ L    ++ +E V+
Sbjct: 308 LLDTPLSS----EQRKHLQTINVSAVTLGNIFNDIIDMDKFDRRKLELFPAALNFEEFVA 363

Query: 670 EAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI-II 727
           E   L  L A +K +        ++P  +  D   ++Q+  N+LSNA+ FT  GG +  +
Sbjct: 364 EIEVLAALMAEQKGLRFDLERLTDLPSLVKVDSTRLRQVLWNLLSNAMKFTKEGGVVMTV 423

Query: 728 STTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGEGTGLGLPLAKAMV 785
           S    +   E+ + V DTG+G+   E EK    + Q+ + +      GTG+GL +++ ++
Sbjct: 424 SAECDAQHAEITIEVEDTGIGIPEAEQEKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLI 483

Query: 786 DANMGKFYIFSTPAKGTLIEIIF--PL 810
               G   + S    G+   +    PL
Sbjct: 484 KLMGGDISVNSEEGFGSTFTVTIRVPL 510



 Score = 45.0 bits (105), Expect = 0.051,   Method: Composition-based stats.
 Identities = 16/128 (12%), Positives = 34/128 (26%), Gaps = 3/128 (2%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           +A G     +  + +  G    +++G+   DV               +   NT       
Sbjct: 172 NAKGEFSGCNRAMEELTGKRESELVGLTPWDVYRKEIAQSIVETDQQVFNNNTAITYE-Q 230

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
           W           +L  +P Y+++    G  GFG               ++  +  +    
Sbjct: 231 WLEYPDGRKSFFELRKVPFYNKDGRHLGLVGFG--RDITERKRHEESLEKASRDKTTFIS 288

Query: 210 IKKGHSSV 217
                   
Sbjct: 289 TISHELRT 296


>gi|304318073|ref|YP_003853218.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302779575|gb|ADL70134.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 565

 Score =  323 bits (827), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 87/364 (23%), Positives = 161/364 (44%), Gaps = 42/364 (11%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           +ME E  ++ +I+   SDG+   N    ++  N A  ++ G                   
Sbjct: 241 EMENEKSKVEAIISYMSDGVIAKNDSNRVILFNNAAERMIG------------------E 282

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP-FSSCYSLTMHDISEW 564
              M+  L +I    L+ T   I        K+L   +   K+          +HDI+E 
Sbjct: 283 KITMDEPLEKIAQGQLKNTESLIYC----NGKILKSFVSPIKVDKNIDGNVFVLHDITEQ 338

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           +                 + + +F+A VSHE+RTPLT I  ++E + N     +      
Sbjct: 339 QNL--------------DNMRKEFVANVSHELRTPLTTIKSYTETLLND---GVDEEYRN 381

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
            + + ID+  + +  +V DLL +SK++S    L+ E  +L+E +   +  +++ A +K  
Sbjct: 382 RFLSIIDKEVDRMTRLVKDLLLLSKMDSNG-KLNLEETNLNEFIENILYKIKIEAQKKNQ 440

Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744
            +          I  D   ++Q+ LN++SNAI +T  GG + + T +  ++   + + D 
Sbjct: 441 KLTFCAGEEKRNINIDRDKMEQVLLNVVSNAIKYTNLGGYVRVFTKY-DDDYAYITISDN 499

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G+   +L +  + F ++   +     GTGLGL +AK +V A+ G+  I S    GT++
Sbjct: 500 GIGIPKKDLPRIFERFYRVDKGRSRELGGTGLGLAIAKEIVTAHGGEINIESEVGIGTIV 559

Query: 805 EIIF 808
            I  
Sbjct: 560 YIKL 563


>gi|70726234|ref|YP_253148.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           haemolyticus JCSC1435]
 gi|68446958|dbj|BAE04542.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           haemolyticus JCSC1435]
          Length = 565

 Score =  323 bits (827), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 90/397 (22%), Positives = 175/397 (44%), Gaps = 31/397 (7%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKR--KMEIEVMQLCSILEATSDGIAIINREGIIL 475
                   +      +   D+  R+ K   K +++  +L + LE     + +I++ G I+
Sbjct: 189 VRVPESNVKETKALFVTTNDLARRLQKLNNKQKMQSNRLKTTLENIPSSVLMIDKHGEIV 248

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
             N A  +LF  P   +  K +T +L+     ++          +     +   L +   
Sbjct: 249 VANHAYYELFR-PNGKVENKNYTSYLDPKIQQLILESF----KTEKPLYDQIEILLNNVH 303

Query: 536 EKLLSLRIIIKKLPFS---SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
            K   L  +              + MHDI+  K+ +              + + +F+A V
Sbjct: 304 HKYFDLSCVPILSKSKKKLQGMVVVMHDITNLKKLE--------------NLRREFVANV 349

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIE 651
           SHE++TP+T+I GF+E +     G   +   ++ + N I +  N +  +V DLLD+S IE
Sbjct: 350 SHELKTPITSIKGFAETLIE---GAKNDEESLDMFLNIILKESNRIESLVMDLLDLSHIE 406

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
             +  +    ++L E     I  +Q  A  K I I +    ++  I A    + Q+  N+
Sbjct: 407 -QQTEIETAFMNLSELAYTTIDNLQNQARYKDIKIVSEIEKDVI-IEAHENKIAQVITNL 464

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           LSNAI+++    ++I+   +    EV L ++D G+G+   + +   + F ++  ++    
Sbjct: 465 LSNAINYSLENNEVIVRV-YREGHEVNLEIQDFGIGIDKSDQKHIFERFYRVDKARSRDS 523

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            GTGLGL + K +V+A+ G   + S   +G+L ++ F
Sbjct: 524 GGTGLGLSITKHIVEAHHGTINVESNIGEGSLFKVSF 560


>gi|332703162|ref|ZP_08423250.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332553311|gb|EGJ50355.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 657

 Score =  323 bits (827), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 96/396 (24%), Positives = 184/396 (46%), Gaps = 27/396 (6%)

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
                ++ +  +R +     +  ++++   + I  +N++ ++   N A+    G+P    
Sbjct: 119 AMRYAIERKRAERILHQREQEYKALIKNAPNIIVRLNKDLLVQFVNPAIEPAMGHPPAYY 178

Query: 493 LRKPFTV-FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE----KLLSLRIIIKK 547
           + KP       Q         +  + S     +L    +   +      + +       +
Sbjct: 179 IGKPLHEACFPQELSGKYEEVVKGVFSRGKEDSLVFDCIAQNQRRYYHARFVPEFSAKGE 238

Query: 548 LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
           +         +++I+  K  + +L  AK +AE+ +  KS FLA +SHEIRTP+  ++G  
Sbjct: 239 IET---VLSILNEITALKVTEEELRQAKDLAEEANQAKSAFLAAMSHEIRTPMNGVLGMI 295

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
           E+   +R       +  +Y +   +SG  +L I+ND+LD+SKIE+G + +  +P +    
Sbjct: 296 ELALMRR----PTSKVKQYLDLAKQSGQALLLIINDILDLSKIEAGMITIEEQPFNPRAM 351

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQII 726
           +    + + L A +K +  R++ A+ +  + L D   ++Q+  NI+ NAI FT  G +I 
Sbjct: 352 LESLFATMSLAAEQKGLEFRSNVASALSSMALGDEGRLRQVLFNIIGNAIKFTEQG-EIA 410

Query: 727 ISTTHTSNEEVI-L-----------RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           +S      E+   +            +RDTGVG+  + LEK    F Q+ N +     GT
Sbjct: 411 VSIDVPRGEKWRDICGAKGSFCLLASIRDTGVGIPAHMLEKIFDSFTQV-NGRNYEFGGT 469

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           GLGL +++ +V+   GK ++ S P KG+L   + PL
Sbjct: 470 GLGLAISRQLVEMMGGKIWVESEPGKGSLFTFVVPL 505


>gi|150006477|ref|YP_001301221.1| two-component system sensor histidine kinase [Bacteroides vulgatus
           ATCC 8482]
 gi|149934901|gb|ABR41599.1| two-component system sensor histidine kinase [Bacteroides vulgatus
           ATCC 8482]
          Length = 781

 Score =  323 bits (827), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 100/513 (19%), Positives = 201/513 (39%), Gaps = 24/513 (4%)

Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDI 360
            L      S      +   +    +D+       V + G L YAN  F+     K     
Sbjct: 142 VLIMCRDISERVATQQNLEIFKRILDRVSDSILAVSADGTLVYANRQFIEEYGVKGELGT 201

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
           +    L   L+  +  D    +     R +    A  A+   +    E  L +  +    
Sbjct: 202 QKIYDLPVSLNTKEQFDKRVQEI----RDNGGNFAYRAKYTRV---GETKLRVHQVSAFM 254

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR--EGIILSTN 478
                E M       +  D   N+ ++      + +IL      + + +   +   L  N
Sbjct: 255 IQNQGEEMIWFFT-QDITDVIKNRDELRELNYLMDAILNNIPVYLFVKDPEDDFRYLYWN 313

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQ-NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
           +A +     P    L +       +       +    E++    R  +++  + +T E +
Sbjct: 314 KAFASHSKIPASKALGRTDFEVFPEYENAEKFHRDDLELIRTRERMEMQETYVTATGEPR 373

Query: 538 LLSLRIIIKKLPFSSC-YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
           ++     +  L   +        DI+  +  + +L  A+  AE+    K+ FLA +SHEI
Sbjct: 374 IVQTLKTLVPLEGRTPLIIGISWDITNIQNIEQELIFARIKAEQSDRLKTAFLANMSHEI 433

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTPL AI+GFS ++         + +   Y++ I+++  ++L ++ND+LD++KIE+G + 
Sbjct: 434 RTPLNAIVGFSHLM--TIADNAEDEKL--YSDIINQNSEILLQLINDILDLAKIEAGTLE 489

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716
               P+ L E       + +       +++     +    I  D   + Q+  N+++NAI
Sbjct: 490 YIRYPMDLGELCRNVYEMHKDRVQT-GVVLILDNKDTSLIINEDQNRIMQVVTNLITNAI 548

Query: 717 HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
            FT  G +I           +   V+DTG+G++  +++   + F ++        +GTGL
Sbjct: 549 KFTFKG-EIRFGFEVREE-YIDFYVKDTGMGISEEKIKMIFERFVKLNTF----VQGTGL 602

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GL + + +V+   G+    S   +G+      P
Sbjct: 603 GLAICRVIVEKLGGEITAESKLNEGSTFRFTIP 635



 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 42/127 (33%), Gaps = 5/127 (3%)

Query: 457 ILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           IL++  D + + N E   I   +   +   G    D         + +     +++ L +
Sbjct: 48  ILDSLPDMLTVFNHEEMGIEVVSNEETNHVGVSNNDFKGMRMQDMVPKEAYHNIHNNLQK 107

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575
           ++S     T          +  L      I  L       +   DISE    +  L   K
Sbjct: 108 VISTGRGSTAHHEL---DVDGTLHYYENRIFPL-DEEYVLIMCRDISERVATQQNLEIFK 163

Query: 576 KIAEKES 582
           +I ++ S
Sbjct: 164 RILDRVS 170


>gi|323464229|gb|ADX76382.1| alkaline phosphatase synthesis sensor protein PhoR [Staphylococcus
           pseudintermedius ED99]
          Length = 566

 Score =  323 bits (827), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 80/398 (20%), Positives = 176/398 (44%), Gaps = 31/398 (7%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEI--EVMQLCSILEATSDGIAIINREGIIL 475
                   + + +  +    +  R+ +   E   +  +L + LE     I +I++ G I+
Sbjct: 193 VRLPESSVKELRELYVTINVLARRLEQLNSEQKIQRNRLVTTLENIPSAILMIDKNGKIV 252

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
             N+   ++F      +  + +  +L      ++          +     +     +   
Sbjct: 253 IANKTFYEVFNASTN-VENQDYARYLHPTIKQLVVEGFR----TEKAMYKQVEISINHIH 307

Query: 536 EKLLSLRIIIKKLPFS---SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
           +K      +              + +HDI++ K+ +              + +S+F+A V
Sbjct: 308 QKFFDTSCVPILSRTKKSLQGMVIVLHDITQLKKLE--------------NLRSEFVANV 353

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIE 651
           SHE++TP+T++ GF+E + +   G   +   ++ + N I +  N +  +V DLLD+SKIE
Sbjct: 354 SHELKTPITSMKGFTETLID---GAKNDEASLDLFLNIILKESNRIQSLVEDLLDLSKIE 410

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
                L    + L +    + S++Q  ANEK I +      N+   +AD   + Q+ +N+
Sbjct: 411 QNT-TLEKHLIDLSDVAKSSFSVIQPLANEKSIQLIDQIEPNV-TAMADENKISQVIVNL 468

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           ++NA++++P    + ++  +  N+  ++ V D G+G+   E  +  + F ++  ++    
Sbjct: 469 MTNAVNYSPENRTVTLAV-YRENQHPVIEVIDQGIGIGEKEKYRIFERFYRVDKARSRDS 527

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            GTGLGL + K +++A  G   + S   KG+  +++ P
Sbjct: 528 GGTGLGLSITKHIIEAYQGNIEVASELGKGSRFKVVLP 565


>gi|319892739|ref|YP_004149614.1| Phosphate regulon sensor protein PhoR/SphS [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317162435|gb|ADV05978.1| Phosphate regulon sensor protein PhoR/SphS [Staphylococcus
           pseudintermedius HKU10-03]
          Length = 566

 Score =  323 bits (827), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 80/398 (20%), Positives = 176/398 (44%), Gaps = 31/398 (7%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEI--EVMQLCSILEATSDGIAIINREGIIL 475
                   + + +  +    +  R+ +   E   +  +L + LE     I +I++ G I+
Sbjct: 193 VRLPESSVKELRELYVTINVLARRLEQLNSEQKIQRNRLVTTLENIPSAILMIDKNGKIV 252

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
             N+   ++F      +  + +  +L      ++          +     +     +   
Sbjct: 253 IANKTFYEVFNASTN-VENQDYARYLHPTIKQLVVEGFR----TEKAMYKQVEISINHIH 307

Query: 536 EKLLSLRIIIKKLPFS---SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
           +K      +              + +HDI++ K+ +              + +S+F+A V
Sbjct: 308 QKFFDTSCVPILSRTKKSLQGMVIVLHDITQLKKLE--------------NLRSEFVANV 353

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIE 651
           SHE++TP+T++ GF+E + +   G   +   ++ + N I +  N +  +V DLLD+SKIE
Sbjct: 354 SHELKTPITSMKGFTETLID---GAKNDEASLDLFLNIILKESNRIQSLVEDLLDLSKIE 410

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
                L    + L +    + S++Q  ANEK I +      N+   +AD   + Q+ +N+
Sbjct: 411 QNT-TLEKHLIDLSDVAKSSFSVIQPLANEKSIQLIDQIEPNV-TAMADENKISQVIVNL 468

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           ++NA++++P    + ++  +  N+  ++ V D G+G+   E  +  + F ++  ++    
Sbjct: 469 MTNAVNYSPENRTVTLAV-YRENQHPVIEVIDQGIGIGEKEKYRIFERFYRVDKARSRDS 527

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            GTGLGL + K +++A  G   + S   KG+  +++ P
Sbjct: 528 GGTGLGLSITKHIIEAYQGNIEVASELGKGSRFKVVLP 565


>gi|260460489|ref|ZP_05808740.1| PAS/PAC sensor hybrid histidine kinase [Mesorhizobium opportunistum
           WSM2075]
 gi|259033594|gb|EEW34854.1| PAS/PAC sensor hybrid histidine kinase [Mesorhizobium opportunistum
           WSM2075]
          Length = 762

 Score =  323 bits (827), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 95/416 (22%), Positives = 173/416 (41%), Gaps = 15/416 (3%)

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
             ++ +             +        E         +M+    +   +++A  D +  
Sbjct: 81  GLAMHLHARRSVHRTAVLLDETSARSRAEIETLADRMWEMQESEERFRGLIDALGDLVIH 140

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
            +R+G I+  N+  + L      D+  K            V           +   + + 
Sbjct: 141 RDRDGYIVYANKVFADLVETDQRDLAGKTLAEL----GIEVGIVPDAAFSDHECLSSTDV 196

Query: 528 ITLGSTKEEKLLSLRIIIK-KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
                +       + + ++ K   ++ +     DI+  K+ ++ L  A++ AE  S  KS
Sbjct: 197 AIRTPSGPRWFSWIELSVRDKDSGAASHRAIARDITARKRAESSLITARERAEYASQAKS 256

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
            FLA VSHEIRTP+  I+G + ++ +    P        Y   I  S + +L ++ DLLD
Sbjct: 257 RFLATVSHEIRTPMNGIMGMARLLADTSLSP----EQQTYVGAISTSASALLALIEDLLD 312

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVK 705
            SKIE+G+ +   +P+S+ E     I L+   A  K I +      ++P+ I AD   V+
Sbjct: 313 YSKIEAGRFDPEPQPISVREIADNIIELLAARAFAKDIGLGCHVEPDVPQMITADPGRVR 372

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSN---EEVILRVRDTGVGMTNYELEKAMKPFGQ 762
           Q+ LN++ NAI FT  GG +++S         + +   + DTG G+ + ++E+  + F Q
Sbjct: 373 QVLLNLIGNAIKFTDGGG-VLVSVARARTATTDRICFTIADTGPGLRDEDMERIFEEFEQ 431

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL-YDTSHPH 817
              +      G GLGL ++K +V A  G   + S   +G+      P    T  P 
Sbjct: 432 ADGTSTRTHGGAGLGLAISKRLVAAMGGTISVSSRLGQGSEFVFEIPATAATEAPQ 487



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 35/384 (9%), Positives = 89/384 (23%), Gaps = 25/384 (6%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D  GY+   ++     +      + G  L ++   + I P+    D      +       
Sbjct: 142 DRDGYIVYANKVFADLVETDQRDLAGKTLAELGIEVGIVPDAAFSD--HECLSSTDVAIR 199

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
            P  G   +  I+L+   +  ++   +  R   I           +      ++  +  +
Sbjct: 200 TP-SGPRWFSWIELS---VRDKDSGAASHR--AIARDITARKRAESSLITARERAEYASQ 253

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
            K    +    +              + +   S  +                L  +    
Sbjct: 254 AKSRFLATVSHEIRTPMNGIMGMARLLADTSLSPEQQTYVGAISTSASALLALIEDLLDY 313

Query: 270 PEQEDFHTINLN-----QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
            + E             +         L   +      L     P +            +
Sbjct: 314 SKIEAGRFDPEPQPISVREIADNIIELLAARAFAKDIGLGCHVEPDVPQMITADPGRVRQ 373

Query: 325 -TVDKCPIPFFVYSHGNLFYANPSFLLLT------KYKSVDDIEIAGGLSTLLDAPKLSD 377
             ++           G +  +       T                   +  + +  + +D
Sbjct: 374 VLLNLIGNAIKFTDGGGVLVSVARARTATTDRICFTIADTGPGLRDEDMERIFEEFEQAD 433

Query: 378 NNAIKP-----VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
             + +      + L  S R   A    +       + S  +  IP   A + P+      
Sbjct: 434 GTSTRTHGGAGLGLAISKRLVAAMGGTISVSSRLGQGSEFVFEIPATAATEAPQGRLDAL 493

Query: 433 IEPEDVDTRINKRKMEIEVMQLCS 456
                V    N  + +     + +
Sbjct: 494 AGRRAVILSRNAVEADAIARTIRA 517


>gi|229065124|ref|ZP_04200417.1| hypothetical protein bcere0026_51770 [Bacillus cereus AH603]
 gi|228716153|gb|EEL67872.1| hypothetical protein bcere0026_51770 [Bacillus cereus AH603]
          Length = 586

 Score =  323 bits (827), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 84/376 (22%), Positives = 161/376 (42%), Gaps = 25/376 (6%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +  +   E E  +L S+L   +DG+   +R+G I+  N    K+     E  L +     
Sbjct: 231 QQARSSTESERRKLSSVLSHMTDGVIATDRKGDIILLNDPAEKMLNVSRETALDQSVLEV 290

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
           L       ++H   E  S+ L  +                  +I K+   ++     ++D
Sbjct: 291 LGIQEEFTLDHLYEEPDSVLLDFSTRNEPYILRAS-----FSVIQKETGKANGLIAVLYD 345

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           ++E ++ + +              + +F+A VSHE+RTPLT +  + E + +  +     
Sbjct: 346 VTEQERIEQE--------------RREFVANVSHELRTPLTTMRSYLEALTDGAWQDPNI 391

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
                +          ++ +VN LL +SK++S +  L  E V   +  +  I   +  + 
Sbjct: 392 APQ--FLTVTQEETERMIRLVNALLQLSKLDSTEHRLMKEWVDFTDFFNNVIDRFE-MSK 448

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV-IL 739
           E+ +  + SF+     I  D   + Q+  NI+SNA+ ++P GG +          E+  +
Sbjct: 449 EQNVSFKRSFSKKSRFIDMDTDKITQVLYNIISNALKYSPEGGTVT--YRLRDRGELLEI 506

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V D G+G+    ++K  + F ++  ++  +  GTGLGL +AK M++A+ G  +  S   
Sbjct: 507 SVSDQGMGIPKENVDKIFERFYRVDKARSRQMGGTGLGLAIAKEMIEAHGGSVWAKSEEG 566

Query: 800 KGTLIEIIFPLYDTSH 815
           KGT I    P+     
Sbjct: 567 KGTTIYFTLPMATDEE 582


>gi|220908073|ref|YP_002483384.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219864684|gb|ACL45023.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 1305

 Score =  323 bits (827), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 118/583 (20%), Positives = 220/583 (37%), Gaps = 85/583 (14%)

Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSV 357
           ++Y                E      +D      + ++   G + Y +  +  +  Y + 
Sbjct: 274 WQYRDVTARKQAENAVKASEQRLKLALDAVEEGLWDWNLVTGEI-YRSDRWYEMLGYCAR 332

Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
           D +     L   L  P   D  A+K ++    +               +      +    
Sbjct: 333 D-LADRNQLREQLVHPD--DLAAMKNLLSAHLNNQTPLYECEARMRTRSGGWLWILDRGR 389

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIE--------------------------- 450
               ++    +   G   +  + +  +  ++ +                           
Sbjct: 390 VVSRDREGNPLRMVGTHLDITERKQAEEALQQQYKRVVLLKQLTEKVRQSLQPEEILKTT 449

Query: 451 VMQLCSILEATSDGIAIINREG-------------IILS---TNRAVSKLFGYPVEDILR 494
           V ++  +L+     I  ++ +G              I      N    ++ GY       
Sbjct: 450 VQEVQQLLQCDRVLIFQLDADGSGTVVQEAVVPGWTITLGQDINDPCLRM-GYLDYYRSG 508

Query: 495 K--PFTVFLEQNTPSVMNHYLTEILSLD---LRQTLEKITLGS------TKEEKLLSLRI 543
           +        + N       +L +        +   + +   G       ++  +   L +
Sbjct: 509 RITAIADLEQANFQPCHREFLQQFQVRANLVVPILVRQELWGLLIVHQCSQPRQWTELEL 568

Query: 544 IIK-KLPFSSCYSLTMHDISEWK--------QEKNKLSHAKKIAEKESSHKSDFLARVSH 594
            +   L      +LT   + E +        ++  +L+ AK  AE  ++ KS+FLA VSH
Sbjct: 569 DLLKHLADQMGVALTQAHLLEQETRNAYLLTRQNEELTAAKHAAEVANAAKSNFLAIVSH 628

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           EIRTP+ A+IG S ++ +    P       +Y   I  S + +L I+ND+LD SKIESGK
Sbjct: 629 EIRTPMNAVIGMSGLLLDTCLTP----EQFDYVETIRNSSDTLLTIINDILDFSKIESGK 684

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILS 713
           + L  +P  L   + EA+ L+   A  K + +      ++P +I+ D+  ++QI  N+LS
Sbjct: 685 LELEEQPFDLRICIEEALDLLAPQAASKGLDLVYFIDPHLPTQIIGDITRLRQILWNLLS 744

Query: 714 NAIHFTPSGGQIIISTTHTSNE---------EVILRVRDTGVGMTNYELEKAMKPFGQIP 764
           NA+ FT  G +++IS      E         E+   V+DTGVG+   ++E+  KPF Q  
Sbjct: 745 NAVKFTAMG-EVVISVQGRELEFYPPFISTYEIQFAVQDTGVGIAREQMERLFKPFSQGD 803

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
            S   R  GTGLGL ++K + +   G+ ++ S   KG+     
Sbjct: 804 ASMTRRYGGTGLGLAISKRLSELMRGRMWVASQEGKGSTFYFT 846



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 34/295 (11%), Positives = 75/295 (25%), Gaps = 27/295 (9%)

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYK-SVDDIEI 362
            R      A      +     ++       V      +   N +F  L      +++++ 
Sbjct: 150 TRQLTRQRAELRSTSSRLRTLIENIQAGVLVEDENRSIVLVNQAFCQLFAIPVPLENLQG 209

Query: 363 AGGLS------TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
                       L   P+      +  + L   +   +        +Q      L   ++
Sbjct: 210 MNCHECGECSKDLFLDPQ----GFLDGIDLILQEGRLVVNE----ELQLRDGRVLERDYV 261

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR-EGIIL 475
           P                  +    +  +  ++    +L   L+A  +G+   N   G I 
Sbjct: 262 PIV---GDGNFYGHLWQYRDVTARKQAENAVKASEQRLKLALDAVEEGLWDWNLVTGEI- 317

Query: 476 STNRAVSKLFGYPVEDILRKP-FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
             +    ++ GY   D+  +      L           L      +     E      T+
Sbjct: 318 YRSDRWYEMLGYCARDLADRNQLREQLVHPDDLAAMKNLLSAHLNNQTPLYECEARMRTR 377

Query: 535 EEKLLSLRII---IKKLPFSSCYSLTMH--DISEWKQEKNKLSHAKKIAEKESSH 584
               L +      + +    +   +     DI+E KQ +  L    K        
Sbjct: 378 SGGWLWILDRGRVVSRDREGNPLRMVGTHLDITERKQAEEALQQQYKRVVLLKQL 432



 Score = 71.2 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 21/159 (13%), Positives = 55/159 (34%), Gaps = 11/159 (6%)

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY--PVEDILR 494
                  + ++     +L +++E    G+ + +    I+  N+A  +LF    P+E++  
Sbjct: 150 TRQLTRQRAELRSTSSRLRTLIENIQAGVLVEDENRSIVLVNQAFCQLFAIPVPLENLQG 209

Query: 495 KPFTVFLEQN-----TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL-RIIIKKL 548
                  E +      P      +  IL    R  + +       + ++L    + I   
Sbjct: 210 MNCHECGECSKDLFLDPQGFLDGIDLILQEG-RLVVNEELQLR--DGRVLERDYVPIVGD 266

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
                +     D++  KQ +N +  +++  +       +
Sbjct: 267 GNFYGHLWQYRDVTARKQAENAVKASEQRLKLALDAVEE 305



 Score = 41.6 bits (96), Expect = 0.66,   Method: Composition-based stats.
 Identities = 39/372 (10%), Positives = 92/372 (24%), Gaps = 16/372 (4%)

Query: 96  KEISEELPKTIGNYAFKMIGMR--LCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIE 153
              S+   + +G  A  +         +     +    ++        T   +       
Sbjct: 317 IYRSDRWYEMLGYCARDLADRNQLREQLVHPDDLAAMKNLLSAHLNNQTPLYECEARMRT 376

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
            +  ++ I      + SR+RE +  R  G               ++  K+   L ++ + 
Sbjct: 377 RSGGWLWILDRGR-VVSRDREGNPLRMVGTHLDITERKQAEEALQQQYKRVVLLKQLTEK 435

Query: 214 HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE 273
                + +  + +       L   ++V            V++    P  T          
Sbjct: 436 VRQSLQPEEILKTTVQEVQQLLQCDRVLIFQLDADGSGTVVQEAVVPGWTITLGQDINDP 495

Query: 274 DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF 333
                    Y      G +   +          +   L  +      + P  V +     
Sbjct: 496 CLRM----GYLDYYRSGRITAIADLEQANFQPCHREFLQQFQVRANLVVPILVRQELWGL 551

Query: 334 FVYSHGNLFYANPSFLLLTKYKSVDDIEI-AGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
            +           S         +D ++  A  +   L    L +       +L R +  
Sbjct: 552 LIVHQ-------CSQPRQWTELELDLLKHLADQMGVALTQAHLLEQETRNAYLLTRQNEE 604

Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK-MEIEV 451
             AA          + N LA+              M    ++      + +  + +    
Sbjct: 605 LTAAKHAAEVANAAKSNFLAIVSHEIRTPMNAVIGMSGLLLDTCLTPEQFDYVETIRNSS 664

Query: 452 MQLCSILEATSD 463
             L +I+    D
Sbjct: 665 DTLLTIINDILD 676


>gi|52082612|ref|YP_081403.1| two-component sensor histidine kinase [Bacillus licheniformis ATCC
           14580]
 gi|52788010|ref|YP_093839.1| YycG [Bacillus licheniformis ATCC 14580]
 gi|319648477|ref|ZP_08002693.1| sensor protein [Bacillus sp. BT1B_CT2]
 gi|52005823|gb|AAU25765.1| two-component sensor histidine kinase [Bacillus licheniformis ATCC
           14580]
 gi|52350512|gb|AAU43146.1| YycG [Bacillus licheniformis ATCC 14580]
 gi|317389556|gb|EFV70367.1| sensor protein [Bacillus sp. BT1B_CT2]
          Length = 614

 Score =  323 bits (827), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 94/377 (24%), Positives = 160/377 (42%), Gaps = 29/377 (7%)

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             + +  +   E E  +L S++   +DG+   NR G I+  N    +L     E  L  P
Sbjct: 251 TRELKEAQSMTEGERKKLSSVIAYMTDGVIATNRNGAIILLNTPALELLNVSRETALEMP 310

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCY 554
            T  L           + +  SL     LE      T    +L +   + +         
Sbjct: 311 ITSLLGLEDEYTFEDLVEQQDSL----LLEIEQEERT---SVLRVNFSVIQKEHGKIDGL 363

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
              ++D++E +Q   +              + +F+A VSHE+RTPLT +  + E +    
Sbjct: 364 IAVIYDVTEQEQIDQE--------------RREFVANVSHELRTPLTTMRSYLEALAE-- 407

Query: 615 FGPLGNPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
            G   +P     + N        ++ +VNDLL +SK +S     + E +      S  I 
Sbjct: 408 -GAWQDPNIAPRFLNVTQNETERMIRLVNDLLQLSKFDSKDYQFNKEWIHFIRFFSLIIE 466

Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
             +    E+ +   ++  +    +  D   + Q+  NI+SNA+ ++P GG I  S     
Sbjct: 467 RFE-MTKEQHVEFISNLPDRELYVEIDPDKITQVLDNIISNALKYSPEGGHITFSVDVNE 525

Query: 734 NEEVI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
            EE++ + V+D GVG+   ++EK  + F ++  ++  R  GTGLGL +AK MV A+ G  
Sbjct: 526 EEELLYVSVKDEGVGIPRKDVEKIFERFYRVDKARTRRLGGTGLGLAIAKEMVQAHSGDI 585

Query: 793 YIFSTPAKGTLIEIIFP 809
           +  S   KGT I    P
Sbjct: 586 WADSIEGKGTTITFTLP 602


>gi|209966096|ref|YP_002299011.1| non-motile and phage-resistance protein [Rhodospirillum centenum
           SW]
 gi|209959562|gb|ACJ00199.1| non-motile and phage-resistance protein [Rhodospirillum centenum
           SW]
          Length = 744

 Score =  323 bits (827), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 121/736 (16%), Positives = 243/736 (33%), Gaps = 43/736 (5%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL-W 150
            G +  +S    + +G    +++     D+              LL    +         
Sbjct: 20  DGTIVALSPAWERELGWSVAELVATDGLDLLHPDDRRAARDRLRLLAAGQSPQRFELRCR 79

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
             +G  L++        + + +        + +                ++         
Sbjct: 80  RKDGRYLWLS---GQSALSAGDGRI-----YSVCRDVTESKRTALHLLAVESHSRVGTWD 131

Query: 211 KKGHSSVEK--EKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
               + V              P  H     +        A    +               
Sbjct: 132 LDLETGVLNWSPMTHRIHATDPATHRPYLEEAGRFFPGEALPALLGAVADLH---QGGGP 188

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
           +  +  F T +        +    + ++             +             + V++
Sbjct: 189 VRLELPFLTADGRARWV-LFSAAAEAHAGRPRHVYGTLEDITEKRQERLHLLAFKDIVER 247

Query: 329 CPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
                +V    G   YAN     +      D +     L  +L  P+    + +  ++  
Sbjct: 248 SNDGIWVLGPDGRTQYANGRMAAIMGCSEQDLLPARF-LDHVLAEPRPRVADLLTGIVRV 306

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
             D       +     + +  ++   +     +            +  +    R  + + 
Sbjct: 307 ERD------WSDFQMWRMDG-SAFWASASIHPRRAPDGTLHSTVVLVRDISAWRRVELER 359

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF--LEQNT 505
           E+   +L         G   ++     +  +  V  +FG   +    +       +  + 
Sbjct: 360 EVNRARLELSQNIARLGYWELDLRSGSVFWSDVVYDIFGVSKDQGAHEQPAFLAAVHPDD 419

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDI 561
              +      I S+       ++      + ++  +  + K    +         T+ DI
Sbjct: 420 RDRVLQMQQRIESIGFADVEHRVVR---PDGEVRWVHEVAKLDRDADGHPLRIIGTVQDI 476

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           +  K  + +L  A   AE  +  K+ FLA +SHE+RTPL AI+GFSE+I++  FG +   
Sbjct: 477 TPQKAVQARLDQAVAQAEAANRAKTQFLATMSHELRTPLNAILGFSEIIRDGTFGQVSPG 536

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
            Y EYA ++  S + +LDI+ND+LD++K+ES  + L  EPV L+E V  A+  V+  A +
Sbjct: 537 IYQEYAGHVFDSASHLLDIINDVLDLAKVESATVTLTPEPVPLEETVRRAVQTVRPIARD 596

Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
           +RI         +  +LAD R++ Q   NILSNA+  +P  G + +           L +
Sbjct: 597 RRISFAVQGGPAV-TVLADRRALLQSLYNILSNALRHSPENGTVEVRLEPED-GFGALTI 654

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRG----EGTGLGLPLAKAMVDANMGKFYIFST 797
           RD G G     L +  +P+      ++         TGLG  +  A++ A  G+    + 
Sbjct: 655 RDFGPGFPPDVLAELGQPY----PGRRNVYVSAARSTGLGYAITAALLGAMGGEIEACNA 710

Query: 798 PAKGTLIEIIFPLYDT 813
           P  G  +    PL   
Sbjct: 711 PDGGACVTFRLPLAPA 726



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/258 (8%), Positives = 64/258 (24%), Gaps = 21/258 (8%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCD-VSDILHIDPNNHIGDLLKRQNTWY 144
            W +   G  +  +  +   +G     ++  R  D V         + +  +++ +  W 
Sbjct: 252 IWVLGPDGRTQYANGRMAAIMGCSEQDLLPARFLDHVLAEPRPRVADLLTGIVRVERDWS 311

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN---RVDNDPRALGKRLD 201
                W ++G+        +  P  + +          +V      R     R + +   
Sbjct: 312 DFQM-WRMDGSAF--WASASIHPRRAPDGTL--HSTVVLVRDISAWRRVELEREVNRARL 366

Query: 202 KKFSHLH-------EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254
           +   ++        +++ G        YDIF              ++++     H DD  
Sbjct: 367 ELSQNIARLGYWELDLRSGSVFWSDVVYDIFGVSKDQGAHEQPAFLAAV-----HPDDRD 421

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
           +  +             +      +       +     ++        +      +    
Sbjct: 422 RVLQMQQRIESIGFADVEHRVVRPDGEVRWVHEVAKLDRDADGHPLRIIGTVQDITPQKA 481

Query: 315 FDEGENLTPETVDKCPIP 332
                +      +     
Sbjct: 482 VQARLDQAVAQAEAANRA 499



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/114 (14%), Positives = 38/114 (33%), Gaps = 2/114 (1%)

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
              + D ++I+  +G I++ + A  +  G+ V +++       L  +        L  + 
Sbjct: 7   FNLSQDLLSIVRTDGTIVALSPAWERELGWSVAELVATDGLDLLHPDDRRAARDRLRLLA 66

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571
           +    Q          K+ + L L                  D++E K+    L
Sbjct: 67  AGQSPQRF--ELRCRRKDGRYLWLSGQSALSAGDGRIYSVCRDVTESKRTALHL 118


>gi|228475150|ref|ZP_04059876.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           hominis SK119]
 gi|314936206|ref|ZP_07843553.1| sensory box histidine kinase PhoR [Staphylococcus hominis subsp.
           hominis C80]
 gi|228270761|gb|EEK12163.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           hominis SK119]
 gi|313654825|gb|EFS18570.1| sensory box histidine kinase PhoR [Staphylococcus hominis subsp.
           hominis C80]
          Length = 565

 Score =  323 bits (827), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 90/397 (22%), Positives = 179/397 (45%), Gaps = 31/397 (7%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKR--KMEIEVMQLCSILEATSDGIAIINREGIIL 475
                   +      +   D+  R+ K   K +++  +L + LE     + +I+++G I+
Sbjct: 189 VRVPESNVKETKALFVTTNDLARRLQKLNNKQKMQSNRLKTTLENIPSSVLMIDKQGEIV 248

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
             N A  ++F  P   +  K +TV L++    ++          +     +     +   
Sbjct: 249 IANHAYYEVFK-PDSKVENKDYTVHLDKEIQHLVIESF----KTEKPLHEQIELYINDVH 303

Query: 536 EKLLSLRIIIKKLPFS---SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
           +K   +  I              + +HDI+  K+ +              + + +F+A V
Sbjct: 304 QKYFDVSCIPILSKAKKKLQGMVVVLHDITNLKKLE--------------NLRREFVANV 349

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIE 651
           SHE++TP+T+I GF+E +     G   + + +E + N I +  N +  +V DLLD+S IE
Sbjct: 350 SHELKTPITSIKGFAETLIE---GAKNDEQSLEVFLNIILKESNRIESLVMDLLDLSHIE 406

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
             +  +    V+L +     I  +Q  A  K I I++   N++  I A    + Q+  N+
Sbjct: 407 -QQTEIETTYVNLSDLAHNTIHNLQTQAKYKNIAIKSEIENDVI-IEAHEGKLSQVITNL 464

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           LSNAI+++    ++I+   +  + +V L ++D G+G+   + +   + F ++  ++    
Sbjct: 465 LSNAINYSYENNKVIVRV-YREDIKVNLEIQDYGIGIDKKDQKHIFERFYRVDKARSRDS 523

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            GTGLGL + K +V+A  G   + S   KG+L  + F
Sbjct: 524 GGTGLGLSITKHIVEALHGTIMVESELNKGSLFRVSF 560


>gi|320352886|ref|YP_004194225.1| PAS/PAC sensor signal transduction histidine kinase [Desulfobulbus
            propionicus DSM 2032]
 gi|320121388|gb|ADW16934.1| PAS/PAC sensor signal transduction histidine kinase [Desulfobulbus
            propionicus DSM 2032]
          Length = 1494

 Score =  323 bits (827), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 111/757 (14%), Positives = 255/757 (33%), Gaps = 65/757 (8%)

Query: 93   GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPI 152
            G +++++    +  G     M GM L  +   +  D        + +++           
Sbjct: 763  GCIQDVNVAASRFYGYSRENMQGMSLLQIV-CMTPDALADTLYKVNKEHLRQLVLQHRLA 821

Query: 153  EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212
            +GT     +++ A PI   ++  +    F I+H      +     ++  + F+   ++  
Sbjct: 822  DGTLR--TVEVNATPIPYDDKTVN----FAIIHDITRRMEIEKEREQYFRLFATSSDLMC 875

Query: 213  GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES-SLPE 271
                 +     I               +      + H +D  +T         E   L  
Sbjct: 876  IADLKQGCFKKINPAGIELLGYSESELLERPYMDFVHAEDRQRTLDAAARQMREGVILDF 935

Query: 272  QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI 331
            +  +   N             +              +  L       E    +  ++   
Sbjct: 936  ENRYLRKNGTICWLSWRGYVDKEEKLTYATARDMTAYKRLVETLAAREEHFRKLFEQHSS 995

Query: 332  PFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389
               +    +G +  AN +      Y   +++         +   +  D    +       
Sbjct: 996  IMVLVDPANGAILDANEAAAQFYGYSR-EELRSMNINQVNMLPQEQIDELMQQLRAQTIK 1054

Query: 390  DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449
                       H +      ++ +   P    +Q         I  +  +  + +++++ 
Sbjct: 1055 QM------IVPHRLASGGIRTVEVHATPIVYQDQQ----LNFSIVHDITERLLGEKRLQK 1104

Query: 450  EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
                   ++E   D +  I+  G I   N A S+  GY  E+++   F+ +  +   +  
Sbjct: 1105 AEAYARKLIEVNLDPLVTIDAGGRIRDVNAASSQATGYSREEMIGTDFSAYFTEPDKA-- 1162

Query: 510  NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWK 565
                 +     + +          ++  +  +      L               DIS  K
Sbjct: 1163 QASYRQAFQTGMVRDFPLEI--RHRDGHVTPVLYNATVLTDEEHKVTGVFAAARDISRLK 1220

Query: 566  QEKNKLSHAKKIAEKESSHKSDFL--------------------ARVSHEIRTPLTAIIG 605
            Q + +L       E++   ++  L                    A ++HE   PL  I+ 
Sbjct: 1221 QAEEQLRVLNAELERKVEERTHELQESQKQVLHAEKLSAIGMLSASIAHEFNNPLQGIMT 1280

Query: 606  FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
              + +K  ++  L +    E  +        +  ++  L + ++  SG+  L    +++ 
Sbjct: 1281 VLKGLK--KWVTLEDEE-RELVDAAIGESERMKHLIRSLQEFNRPSSGRKTL----MNIH 1333

Query: 666  EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF-TPSGGQ 724
            +A+   + L      +K+I +   +A+++P I A    +KQ+ LN+L+NA        G 
Sbjct: 1334 QALDSLLLLQTNVFTKKQIRVERDYADDLPAIEAVPDQIKQVFLNLLTNACDACGRRNGV 1393

Query: 725  IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
            + I T     ++V + V+D+G G+    L++  +PF     S +   +GTGLGL ++  +
Sbjct: 1394 VAIRT-WREGDKVAVAVKDSGGGIAPENLDRIFQPFF----STKEAVKGTGLGLSVSHGI 1448

Query: 785  VDANMGKFYIFSTPAKGTLIEIIFPLY---DTSHPHD 818
            V A+ G+  + S   KG    ++ P++    TSH ++
Sbjct: 1449 VHAHGGEIRVESRLGKGATFTVVLPIHGAKRTSHHNE 1485



 Score =  143 bits (361), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 54/506 (10%), Positives = 136/506 (26%), Gaps = 33/506 (6%)

Query: 86   TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTWY 144
             W  DA G    +S       G    + IG +   +      +     +   +  Q  + 
Sbjct: 628  IWETDAQGRFTYLSPRFADMTGYAPEEYIGEKCIALLPAHEREGIGRQVLTTIANQQPFR 687

Query: 145  GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
                          + ++++A+P+++ N E  GFRG  +                 +++F
Sbjct: 688  SLQHAVHHR-HGQQLTVNVSAVPVFNGNGECLGFRG--VTRDVSEQKLLTDALVASEERF 744

Query: 205  SHLHEIKKGHSSVEKEK-----YDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
              L E       +             +      + R   +  SL +      D L    Y
Sbjct: 745  RCLFEKHSAIMLLVDGSTGCIQDVNVAASRFYGYSRENMQGMSLLQIVCMTPDALADTLY 804

Query: 260  PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
                ++E            +    T +     +     +     +  +  +     ++  
Sbjct: 805  --KVNKEHLRQLVLQHRLADGTLRTVEVNATPI--PYDDKTVNFAIIHDITRRMEIEKER 860

Query: 320  NLTPETVDKCPIPFFVYSH--GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
                           +     G     NP+ + L  Y   + +E             +  
Sbjct: 861  EQYFRLFATSSDLMCIADLKQGCFKKINPAGIELLGYSESELLERPYM-------DFVHA 913

Query: 378  NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
             +  + +                +           +++  +       E         + 
Sbjct: 914  EDRQRTLDAAARQMREGVILDFENRYLRKNGTICWLSWRGYVDK----EEKLTYATARDM 969

Query: 438  VDTRINKRKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRKP 496
               +     +         + E  S  + +++   G IL  N A ++ +GY  E++    
Sbjct: 970  TAYKRLVETLAAREEHFRKLFEQHSSIMVLVDPANGAILDANEAAAQFYGYSREELRSMN 1029

Query: 497  FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE--KLLSLRIIIKKLPFSSCY 554
                +       ++  + ++ +  ++Q +             + + +             
Sbjct: 1030 INQ-VNMLPQEQIDELMQQLRAQTIKQMI---VPHRLASGGIRTVEVHATPIVYQDQQLN 1085

Query: 555  SLTMHDISEWKQEKNKLSHAKKIAEK 580
               +HDI+E    + +L  A+  A K
Sbjct: 1086 FSIVHDITERLLGEKRLQKAEAYARK 1111



 Score =  136 bits (342), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 56/514 (10%), Positives = 131/514 (25%), Gaps = 50/514 (9%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRL-CDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150
                 ++E   +  G    ++IG     +         +  + +L         ++ ++
Sbjct: 508 DHAYTFVNEVFCRFFGQTEQELIGRAWYPEAVAEDIPMIHAALQELSPANPVVTIESRVY 567

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
              GT  +V +      I+    +    +G G               ++ ++KF  L E 
Sbjct: 568 DAAGTVRWVQVINRG--IFDAAGQLVEIQGVG--RDITERKQLEEQLRKSEEKFRSLVET 623

Query: 211 KKGHSSVEKEKYD--IFSQQSPPPHLRMKNKVSSL---TEYYAHKDDVLKTEKYPLLTSE 265
                     +      S +          +           AH+ + +  +    + ++
Sbjct: 624 TSECIWETDAQGRFTYLSPRFADMTGYAPEEYIGEKCIALLPAHEREGIGRQVLTTIANQ 683

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTL----QNNSKESFEYLSHRNHPSLSAYFDEGENL 321
           +     Q   H  +  Q T       +                      L+      E  
Sbjct: 684 QPFRSLQHAVHHRHGQQLTVNVSAVPVFNGNGECLGFRGVTRDVSEQKLLTDALVASEER 743

Query: 322 TPETVDKCPIPFFVYSH--GNLFYANPSFLLLTKYKSV-----DDIEIAGGLSTLLDAPK 374
                +K      +     G +   N +      Y          ++I       L    
Sbjct: 744 FRCLFEKHSAIMLLVDGSTGCIQDVNVAASRFYGYSRENMQGMSLLQIVCMTPDALADTL 803

Query: 375 L---SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
                ++     +    +D T          I ++ +                       
Sbjct: 804 YKVNKEHLRQLVLQHRLADGTLRTVEVNATPIPYDDKTVNFAIIHDIT------------ 851

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVE 490
                       + ++E E  Q   +   +SD + I + ++G     N A  +L GY   
Sbjct: 852 -----------RRMEIEKEREQYFRLFATSSDLMCIADLKQGCFKKINPAGIELLGYSES 900

Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
           ++L +P+  F+               +   +   L+       K   +  L         
Sbjct: 901 ELLERPYMDFVHAEDRQRTLDAAARQMREGV--ILDFENRYLRKNGTICWLSWRGYVDKE 958

Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
                 T  D++ +K+    L+  ++   K    
Sbjct: 959 EKLTYATARDMTAYKRLVETLAAREEHFRKLFEQ 992



 Score =  135 bits (340), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 41/497 (8%), Positives = 134/497 (26%), Gaps = 49/497 (9%)

Query: 118 LCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSG 177
           L  +        +  + + ++++     +  +   +G+  ++    +A   +S +R  + 
Sbjct: 259 LNSLFPEDRESADQQVREAMEKRKDLDLEYRILWPDGSLRWI----SARGRFSHDRHGAP 314

Query: 178 FRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYD---IFSQQSPPPHL 234
            R  G++              + +++F  L              +    +   +      
Sbjct: 315 LRLEGVITDLTERKQMEERLHKSEQRFRALTLASSDVVYCMSPDWREMKLLYGKDFIADT 374

Query: 235 RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294
              ++            D +       + ++ S+   +      + +          L +
Sbjct: 375 DSPSRHWLERYIRPQDQDHVLAVIDQAIRTK-STFTLEHQVLQTDGSPGWTSSRAIPLLD 433

Query: 295 NSKESFEYLSHRNHPSLSAYFD-----------------------------EGENLTPET 325
                 E+    ++ ++    +                               E+     
Sbjct: 434 EQGNIVEWFGAASNITVRKQAELAAKLLANNLQQQVAEGTIELEQAVKALQASEHRYRSV 493

Query: 326 VDKCPIPFFVY--SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
           V+        +        + N  F         + I  A         P+    +    
Sbjct: 494 VEDQTEMIARFKPDDHAYTFVNEVFCRFFGQTEQELIGRAW-------YPEAVAEDIPMI 546

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
               +              +         +  I     +   + +   G+  +  + +  
Sbjct: 547 HAALQELSPANPVVTIESRVYDAAGTVRWVQVINRGIFDAAGQLVEIQGVGRDITERKQL 606

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE- 502
           + ++     +  S++E TS+ I   + +G     +   + + GY  E+ + +     L  
Sbjct: 607 EEQLRKSEEKFRSLVETTSECIWETDAQGRFTYLSPRFADMTGYAPEEYIGEKCIALLPA 666

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHD 560
                +    LT I +    ++L+        ++  +++  +           +     D
Sbjct: 667 HEREGIGRQVLTTIANQQPFRSLQHAVHHRHGQQLTVNVSAVPVFNGNGECLGFRGVTRD 726

Query: 561 ISEWKQEKNKLSHAKKI 577
           +SE K   + L  +++ 
Sbjct: 727 VSEQKLLTDALVASEER 743



 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 46/540 (8%), Positives = 148/540 (27%), Gaps = 51/540 (9%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGM--RLCDVSDILHIDP-NNHIGDLLKRQNTW 143
           WN++        S    + +G    ++         +      +P   H+  + + +  +
Sbjct: 99  WNLETDEVW--YSPRYKEMLGYAEEEIEHHLSSWLRLLHPDDREPCLQHVDAVKQGEREY 156

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPI-YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
             +  L   +G   Y+ I    LP+  + + +    R  G            A  +  ++
Sbjct: 157 EMEFRLRHKDGR--YLAILSRGLPLKRASDGKVV--RIVGTHLDLTARKRADAALRLSEE 212

Query: 203 KFSHLHEIKKGHSSV-----EKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257
           +     +  +  +        +  +    +Q       M    ++       +D     +
Sbjct: 213 RLRLALDAARMGAFHWNITTGEVVWTGSYRQVAGISSDMPANYANWLNSLFPEDRESADQ 272

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
           +      +   L  +      + +            +               +     +E
Sbjct: 273 QVREAMEKRKDLDLEYRILWPDGSLRWISARGRFSHDRHGAPLRLEGVITDLTERKQMEE 332

Query: 318 GENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
             + + +      +     S   ++  +P +  +      D I      S       +  
Sbjct: 333 RLHKSEQRFRALTLA----SSDVVYCMSPDWREMKLLYGKDFIADTDSPSRHWLERYIRP 388

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
            +    + +        +     H +     +    +       ++    +   G     
Sbjct: 389 QDQDHVLAVIDQAIRTKSTFTLEHQVLQTDGSPGWTSSRAIPLLDEQGNIVEWFGAASNI 448

Query: 438 VDTRINK-------------------------RKMEIEVMQLCSILEATSDGIAIINREG 472
              +  +                         + ++    +  S++E  ++ IA    + 
Sbjct: 449 TVRKQAELAAKLLANNLQQQVAEGTIELEQAVKALQASEHRYRSVVEDQTEMIARFKPDD 508

Query: 473 I-ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
                 N    + FG   ++++ + +          +++  L E+   +   T+E     
Sbjct: 509 HAYTFVNEVFCRFFGQTEQELIGRAWYPEAVAEDIPMIHAALQELSPANPVVTIESRVY- 567

Query: 532 STKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
                 +  +++I + +  ++   +       DI+E KQ + +L  +++         S+
Sbjct: 568 -DAAGTVRWVQVINRGIFDAAGQLVEIQGVGRDITERKQLEEQLRKSEEKFRSLVETTSE 626



 Score =  103 bits (256), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 37/365 (10%), Positives = 92/365 (25%), Gaps = 15/365 (4%)

Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQE-DFHTINLNQYTKKQYFGTL----QNNSK 297
           + + + H DD  +            ++ E E      +                 +   +
Sbjct: 1   MLQRHIHPDDAARVHYTFATALHHCAVYELEHRIVRPDGQVRWVHNRAYPYCNGKEKPVR 60

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYA-NPSFLLLTKYKS 356
                L               +      V       + ++        +P +  +  Y  
Sbjct: 61  YIGATLDITERKQAQQALQASDERFNLAVQAAQEGVWDWNLETDEVWYSPRYKEMLGYAE 120

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
            +          LL              +     +              +      ++  
Sbjct: 121 EEIEHHLSSWLRLLHPDDREPCLQHVDAV----KQGEREYEMEFRLRHKDGRYLAILSRG 176

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIIL 475
              K     + +   G   +    +     + +   +L   L+A   G    N   G ++
Sbjct: 177 LPLKRASDGKVVRIVGTHLDLTARKRADAALRLSEERLRLALDAARMGAFHWNITTGEVV 236

Query: 476 STNRAVSKLFGYPVED-ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
            T  +  ++ G   +       +   L        +  + E +       LE   L    
Sbjct: 237 WT-GSYRQVAGISSDMPANYANWLNSLFPEDRESADQQVREAMEKRKDLDLEYRILWPDG 295

Query: 535 EEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
             + +S R         +       + D++E KQ + +L  +++     +   SD +  +
Sbjct: 296 SLRWISARGRFSHDRHGAPLRLEGVITDLTERKQMEERLHKSEQRFRALTLASSDVVYCM 355

Query: 593 SHEIR 597
           S + R
Sbjct: 356 SPDWR 360



 Score = 55.0 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/127 (11%), Positives = 33/127 (25%), Gaps = 5/127 (3%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            IDA G +++++    +  G    +MIG                      +          
Sbjct: 1123 IDAGGRIRDVNAASSQATGYSREEMIGTDFSAYFTEPD-KAQASYRQAFQTGMVRDFPLE 1181

Query: 149  LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
            +   +G     P+   A  +     + +G   F                + L+ +     
Sbjct: 1182 IRHRDGH--VTPVLYNATVLTDEEHKVTGV--FAAARDISRLKQAEEQLRVLNAELERKV 1237

Query: 209  EIKKGHS 215
            E +    
Sbjct: 1238 EERTHEL 1244


>gi|294775421|ref|ZP_06740936.1| PAS domain S-box [Bacteroides vulgatus PC510]
 gi|294450741|gb|EFG19226.1| PAS domain S-box [Bacteroides vulgatus PC510]
          Length = 781

 Score =  323 bits (827), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 100/513 (19%), Positives = 201/513 (39%), Gaps = 24/513 (4%)

Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDI 360
            L      S      +   +    +D+       V + G L YAN  F+     K     
Sbjct: 142 VLIMCRDISERVATQQNLEIFKRILDRVSDSILAVSADGTLVYANRQFIEEYGVKGELGT 201

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
           +    L   L+  +  D    +     R +    A  A+   +    E  L +  +    
Sbjct: 202 QKIYDLPVSLNTKEQFDKRVQEI----RDNGGNFAYRAKYTRV---GETKLRVHQVSAFM 254

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR--EGIILSTN 478
                E M       +  D   N+ ++      + +IL      + + +   +   L  N
Sbjct: 255 IQNQGEEMIWFFT-QDITDVIKNRDELRELNYLMDAILNNIPVYLFVKDPEDDFRYLYWN 313

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQ-NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
           +A +     P    L +       +       +    E++    R  +++  + +T E +
Sbjct: 314 KAFASHSKIPASKALGRTDFEVFPEYENAEKFHRDDLELIRTRERMEMQETYVTATGEPR 373

Query: 538 LLSLRIIIKKLPFSSC-YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
           ++     +  L   +        DI+  +  + +L  A+  AE+    K+ FLA +SHEI
Sbjct: 374 IVQTLKTLVPLEGRTPLIIGISWDITNIQNIEQELIFARIKAEQSDRLKTAFLANMSHEI 433

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTPL AI+GFS ++         + +   Y++ I+++  ++L ++ND+LD++KIE+G + 
Sbjct: 434 RTPLNAIVGFSHLM--TIADNAEDEKL--YSDIINQNSEILLQLINDILDLAKIEAGTLE 489

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716
               P+ L E       + +       +++     +    I  D   + Q+  N+++NAI
Sbjct: 490 YIRYPMDLGELCRNVYEMHKDRVQT-GVVLILDNKDTSLIINEDQNRIMQVVTNLITNAI 548

Query: 717 HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
            FT  G +I           +   V+DTG+G++  +++   + F ++        +GTGL
Sbjct: 549 KFTFKG-EIRFGFEVREE-YIDFYVKDTGMGISEEKIKMIFERFVKLNTF----VQGTGL 602

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GL + + +V+   G+    S   +G+      P
Sbjct: 603 GLAICRVIVEKLGGEITAESKLNEGSTFRFTIP 635



 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 42/127 (33%), Gaps = 5/127 (3%)

Query: 457 ILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           IL++  D + + N E   I   +   +   G    D         + +     +++ L +
Sbjct: 48  ILDSLPDMLTVFNHEEMGIEVVSNEETNHVGVSNNDFKGMRMQDMVPKEAYHNIHNNLQK 107

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575
           ++S     T          +  L      I  L       +   DISE    +  L   K
Sbjct: 108 VISTGRGSTAHHEL---DVDGTLHYYENRIFPL-DEEYVLIMCRDISERVATQQNLEIFK 163

Query: 576 KIAEKES 582
           +I ++ S
Sbjct: 164 RILDRVS 170


>gi|121727517|ref|ZP_01680635.1| sensor histidine kinase FexB [Vibrio cholerae V52]
 gi|147673942|ref|YP_001217872.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae
           O395]
 gi|262168356|ref|ZP_06036053.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae
           RC27]
 gi|121630185|gb|EAX62587.1| sensor histidine kinase FexB [Vibrio cholerae V52]
 gi|146315825|gb|ABQ20364.1| sensor histidine kinase FexB [Vibrio cholerae O395]
 gi|227014264|gb|ACP10474.1| sensor histidine kinase FexB [Vibrio cholerae O395]
 gi|262023248|gb|EEY41952.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae
           RC27]
          Length = 785

 Score =  323 bits (827), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 87/387 (22%), Positives = 165/387 (42%), Gaps = 19/387 (4%)

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
            +E E       + ++      L S ++A+ D I   N +G     NRA+ +L G    +
Sbjct: 135 DLENEVYQREKTQVELAERTALLRSFIDASPDLIYYRNAKGEFSGCNRAMEELTGKRESE 194

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
           ++         +     +     ++ + +   T E+        +    LR +       
Sbjct: 195 LVGLTPWDVYRKEIAQSIVETDQQVFNNNTAITYEQWLEYPDGRKSFFELRKVPFYNKDG 254

Query: 552 S--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                     DI+E K+ +  L       EK S  K+ F++ +SHE+RTPL  I+G S +
Sbjct: 255 RHLGLVGFGRDITERKRHEESL-------EKASRDKTTFISTISHELRTPLNGIVGLSRM 307

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           + +            ++   I+ S   + +I ND++D+ K +  K+ L    ++ +E V+
Sbjct: 308 LLDTPLSS----EQRKHLQTINVSAVTLGNIFNDIIDMDKFDRRKLELFPAALNFEEFVA 363

Query: 670 EAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI-II 727
           E   L  L A +K +        ++P  +  D   ++Q+  N+LSNA+ FT  GG +  +
Sbjct: 364 EIEVLAALMAEQKGLRFDLERLTDLPSLVEVDSTRLRQVLWNLLSNAMKFTKEGGVVMTV 423

Query: 728 STTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGEGTGLGLPLAKAMV 785
           S    +   E+ + V DTG+G+   E EK    + Q+ + +      GTG+GL +++ ++
Sbjct: 424 SAECDAQHAEITIEVEDTGIGIPEAEQEKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLI 483

Query: 786 DANMGKFYIFSTPAKGTLIEIIF--PL 810
               G   + S    G+   +    PL
Sbjct: 484 KLMGGDISVNSEEGFGSTFTVTIRVPL 510



 Score = 45.4 bits (106), Expect = 0.040,   Method: Composition-based stats.
 Identities = 33/240 (13%), Positives = 60/240 (25%), Gaps = 18/240 (7%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           +A G     +  + +  G    +++G+   DV               +   NT       
Sbjct: 172 NAKGEFSGCNRAMEELTGKRESELVGLTPWDVYRKEIAQSIVETDQQVFNNNTAITYE-Q 230

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
           W           +L  +P Y+++    G  GFG               ++  +  +    
Sbjct: 231 WLEYPDGRKSFFELRKVPFYNKDGRHLGLVGFG--RDITERKRHEESLEKASRDKTTFIS 288

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY--------------AHKDDVLK 255
                           S+      L  + +    T                   K D  K
Sbjct: 289 TISHELRTPLNGIVGLSRMLLDTPLSSEQRKHLQTINVSAVTLGNIFNDIIDMDKFDRRK 348

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
            E +P   + E  + E E    +   Q   +     L +      E  S R    L    
Sbjct: 349 LELFPAALNFEEFVAEIEVLAALMAEQKGLRFDLERLTDL-PSLVEVDSTRLRQVLWNLL 407


>gi|332800441|ref|YP_004461940.1| multi-sensor signal transduction histidine kinase
           [Tepidanaerobacter sp. Re1]
 gi|332698176|gb|AEE92633.1| multi-sensor signal transduction histidine kinase
           [Tepidanaerobacter sp. Re1]
          Length = 701

 Score =  323 bits (827), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 85/495 (17%), Positives = 179/495 (36%), Gaps = 33/495 (6%)

Query: 321 LTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
              E +        +      + +AN +   L  Y   +  +       L+ AP    + 
Sbjct: 235 AADEIIATMSDALILLDTDYKIAFANNAAYDLLGYSPYELQDKPFD---LITAPAADGSI 291

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
             K +            +     ++     ++ +  +     ++F E         +  +
Sbjct: 292 ISKLLA------ESDDVNNHEMYLKAKSGENIPVWILASAVKDKFGEPTGIVINARDVRE 345

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
            +  ++ +     +  S++E    GI I  ++  I+  N   + + GY  +D++ +    
Sbjct: 346 HKKIEQDLRESEEKYRSLVEHALIGIGIH-QDNKIVYANEKFATMLGYTAKDVVGRWIAD 404

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM- 558
            +     S +   +         +          ++       I    + ++   +    
Sbjct: 405 IIHPEDRSFILERVER-RQSGSSEPDTYEIRFLREDSSFFYALISNVLIDYNGNTATLFN 463

Query: 559 -HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
             DI++ K        ++   E+ +     F   VSH++R PL +I GFS+ +       
Sbjct: 464 IVDITDTK--------SRIELEQINKELESFSYTVSHDLRAPLRSIKGFSQALLEDYEDM 515

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
           L +   I Y   I  +   +   ++DLL +S++  G+  L    V+L E   E  + ++ 
Sbjct: 516 LDSD-GINYLQRIYTAAKRMEGFIDDLLKLSRL--GRAQLCMSSVNLSEICREIAAELKD 572

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT--PSGGQIIISTTHTSNE 735
              ++R+ I  +       +  D   ++ +  N+L NA  FT      +I     H+ + 
Sbjct: 573 LEPQRRVQIEIAKD---ITVYGDQSLLQVVIQNLLQNAWKFTGKNPNAKIEFGIMHSEDG 629

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            +   VRD G+G      +K  KPF ++    +    GTG+GL     ++  + GK +  
Sbjct: 630 PIYF-VRDNGIGFDMSYADKLFKPFQRLH--TEAEFAGTGIGLATVYKIIQRHGGKIWAE 686

Query: 796 STPAKGTLIEIIFPL 810
           S   KGT      PL
Sbjct: 687 SHENKGTTFYFTLPL 701



 Score = 55.4 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/240 (12%), Positives = 69/240 (28%), Gaps = 9/240 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D    +   +      +G   +++      D+      D  + I  LL   +       
Sbjct: 250 LDTDYKIAFANNAAYDLLGYSPYELQDKPF-DLITAPAADG-SIISKLLAESDDVNNHEM 307

Query: 149 LWP-IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                 G N+ V I  +A  +  +  E +G          R         +  ++K+  L
Sbjct: 308 YLKAKSGENIPVWILASA--VKDKFGEPTGI--VINARDVREHKKIEQDLRESEEKYRSL 363

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPP--HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
            E       + ++   +++ +          K+ V        H +D     +       
Sbjct: 364 VEHALIGIGIHQDNKIVYANEKFATMLGYTAKDVVGRWIADIIHPEDRSFILERVERRQS 423

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
            SS P+  +   +  +          +  +   +   L +    + +    E E +  E 
Sbjct: 424 GSSEPDTYEIRFLREDSSFFYALISNVLIDYNGNTATLFNIVDITDTKSRIELEQINKEL 483


>gi|170738842|ref|YP_001767497.1| multi-sensor signal transduction histidine kinase [Methylobacterium
           sp. 4-46]
 gi|168193116|gb|ACA15063.1| multi-sensor signal transduction histidine kinase [Methylobacterium
           sp. 4-46]
          Length = 830

 Score =  323 bits (827), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 114/680 (16%), Positives = 233/680 (34%), Gaps = 36/680 (5%)

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR-------LDK 202
               G    +              +  G R    +     +       +           
Sbjct: 161 LRSRGERFRLTARTLGGRTVEAQGQAVGGRALLRLREITGERQELVELRATLQEARGSLS 220

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
             + L +              +    +             +        D    ++    
Sbjct: 221 VLAALLDAIPQPVWRRGRDGRLLWANAAYVAAVEATDRERVVAEGVELLDRAARDEAERR 280

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
            +   +   +         +         +   +      +      S+ A         
Sbjct: 281 RTSREAGALRVSAVVAGARRTLD---VTEVALETGSVGIAVDVSELESVRADLQRQMEAN 337

Query: 323 PETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
             T+D+ P    ++     L + N ++  L        ++ +     +LDA + +     
Sbjct: 338 VRTLDQLPTAVAIFDARQRLIFHNAAYRQLWDLGP-AFLDGSPLDGEILDALRNARKLPE 396

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
           +            A  A      W          +P  +  +   +    G      D  
Sbjct: 397 QADFRSWKTGVLSAYRAAEAQENW--------WHLPDGRTLRVVADPNPQGGLTYLFDDV 448

Query: 442 INKRKMEIEVMQLCSI----LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
             +  +E     L  +    L+   + +A+   +G +   NRA   ++    E +  +P 
Sbjct: 449 SERVHLESRYNALMRVQSETLDTLKEPVAVFGSDGRLKLANRAFMAIWRIGPETLAAQPH 508

Query: 498 TVFLEQNTPSVMNHY-----LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
              +     S+         +   ++  +       +    K+  +L             
Sbjct: 509 VDEIIGLCRSLSAAEEPWTEIRGAVTGLMDARHAVASRLELKDGTVLDCAAQPLP---DG 565

Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
              LT  D++     +  L+   +  E+ +  + +F+  VS+E+R+PLT IIGF+E++ +
Sbjct: 566 ATLLTHIDVTASVNVERALTEKNEALERTARLRDEFVHHVSYELRSPLTNIIGFTELLGD 625

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
           +  G L N R  EYA++I RS   +L I+ND+LD++ I++G M L  E V +   ++ A+
Sbjct: 626 ETVGAL-NTRQREYADHIMRSSAALLVIINDILDLASIDAGSMELTREVVDVQATIAAAV 684

Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
             ++    E  I +      +I   +AD + ++QI  N+LSNAI F+  G  +++    T
Sbjct: 685 RGIEDRLAEAAITLDLDVPADIGGFVADGKRIRQILFNLLSNAIGFSAPGQTVVVQARKT 744

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
              E+   V D G GM    + +    F    ++   R  G GLGL + ++ V+ + G+ 
Sbjct: 745 -GAEIAFSVIDQGRGMPPEVVARVFDRFE--SHTLGTRHRGVGLGLSIVRSFVELHGGRI 801

Query: 793 YIFSTPAKGTLIEIIFPLYD 812
            I S P +GT +   FP+ +
Sbjct: 802 DIASAPGQGTRVTCTFPIGN 821



 Score = 65.0 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 42/388 (10%), Positives = 95/388 (24%), Gaps = 40/388 (10%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG---DLLKRQNT 142
            W     G L   +                     V+ +   D    +    +LL R   
Sbjct: 233 VWRRGRDGRLLWANAAY------------------VAAVEATDRERVVAEGVELLDRAAR 274

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRG-FGIVHVNRVDNDPRALGKRLD 201
              +      E   L V   +A         E +   G  GI          RA  +R  
Sbjct: 275 DEAERRRTSREAGALRVSAVVAGARRTLDVTEVALETGSVGIAVDVSELESVRADLQRQM 334

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
           +      +      ++   +  +    +     ++ +   +  +      ++L   +   
Sbjct: 335 EANVRTLDQLPTAVAIFDARQRLIFHNAAY--RQLWDLGPAFLDGSPLDGEILDALRNAR 392

Query: 262 LTSEESSL-----PEQEDFHTINLNQYTKKQYFGTLQNNSKESFE-------YLSHRNHP 309
              E++            +      +       G       +          +       
Sbjct: 393 KLPEQADFRSWKTGVLSAYRAAEAQENWWHLPDGRTLRVVADPNPQGGLTYLFDDVSERV 452

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
            L + ++    +  ET+D    P  V+ S G L  AN +F+ + +               
Sbjct: 453 HLESRYNALMRVQSETLDTLKEPVAVFGSDGRLKLANRAFMAIWRIGPETLAAQPHVDEI 512

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
           +     LS        +         A  A    ++      L     P    +      
Sbjct: 513 IGLCRSLSAAEEPWTEIRGAVTGLMDARHAVASRLELKDGTVLDCAAQPLP--DGATLLT 570

Query: 429 PQNGIEPEDVDTRINKR-KMEIEVMQLC 455
             +     +V+  + ++ +      +L 
Sbjct: 571 HIDVTASVNVERALTEKNEALERTARLR 598



 Score = 48.9 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/199 (10%), Positives = 51/199 (25%), Gaps = 19/199 (9%)

Query: 402 TIQWNRENSLAMTFI---PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ----- 453
           T++   E              +A              E    R    ++   + +     
Sbjct: 160 TLRSRGERFRLTARTLGGRTVEAQGQAVGGRALLRLREITGERQELVELRATLQEARGSL 219

Query: 454 --LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
             L ++L+A    +    R+G +L  N A          +         + +    +   
Sbjct: 220 SVLAALLDAIPQPVWRRGRDGRLLWANAAYVAAVEATDRE-------RVVAEGVELLDRA 272

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571
              E       +    + + +       +L +    L   +       D+SE +  +  L
Sbjct: 273 ARDEAERRRTSREAGALRVSAVVAGARRTLDVTEVAL--ETGSVGIAVDVSELESVRADL 330

Query: 572 SHAKKIAEKESSHKSDFLA 590
               +   +        +A
Sbjct: 331 QRQMEANVRTLDQLPTAVA 349


>gi|254163152|ref|YP_003046260.1| aerobic respiration control sensor protein ArcB [Escherichia coli B
           str. REL606]
 gi|253975053|gb|ACT40724.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli B str. REL606]
          Length = 778

 Score =  322 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 85/438 (19%), Positives = 179/438 (40%), Gaps = 21/438 (4%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L +           L  +Q     +     I   +  +         ++ E
Sbjct: 81  EESRQRLSRLVQKLEEMRERDLSL-NVQLKDNIAQLNQEIAVREKAEAELQETFGQLKIE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             +    + ++E +   L S L+A+ D +   N +      NRA+  L G   + ++   
Sbjct: 140 IKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCY 554
                     + +     ++   ++  T E+        +    +  +    ++      
Sbjct: 200 PADVYSPEAAAKVIETDEKVFRHNVSLTYEQWLDYPDGRKACFEICKVPYYDRVGKRHGL 259

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+        +   E+ S  K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 260 MGFGRDITERKR-------YQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE 312

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     +Y   I  S   + +I ND++D+ K+E  K+ L  +PV     +++  +L
Sbjct: 313 LTA----EQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENL 368

Query: 675 VQLYANEKRILIRTSFANNIP---RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
             L A +K   +R +    +P   +++ D   ++QI  N++SNA+ FT  G Q+ +   +
Sbjct: 369 SALQAQQKG--LRFNLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQG-QVTVRVRY 425

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMG 790
              + +   V D+G+G+   EL+K    + Q+ +S   +   GTG+GL +++ +     G
Sbjct: 426 DEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGG 485

Query: 791 KFYIFSTPAKGTLIEIIF 808
              + S   KG+   +  
Sbjct: 486 DITVTSEQGKGSTFTLTI 503


>gi|300864609|ref|ZP_07109467.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300337358|emb|CBN54615.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 992

 Score =  322 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 110/750 (14%), Positives = 233/750 (31%), Gaps = 50/750 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD-ILHIDPNNHIGDLLKRQNTWYGKT 147
           +D  G ++  +    K  G    ++IG  L  +     H D   +        +T     
Sbjct: 255 LDEQGNIESFNLAAEKIFGWEGKEVIGQNLRKLIAKPAHEDSTGNYLQNFLTNSTAKLNI 314

Query: 148 TLWPIEG---TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK------ 198
               I+G        P++LA   +   +         GI        +     +      
Sbjct: 315 CQQEIQGIRKNGATFPMELAVSEMRLASGRLF----IGICRDITERKEAEKTLRKQSQLL 370

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
            L      + ++    +   +    ++  +      +  + +  L   +      +K   
Sbjct: 371 DLANDSITVLDLNDDIADWNQGARRLYGWRKSEVMGKNIHTL--LQTEFPESLPKIKAAF 428

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
                 E   L  ++D   + +      Q        +          +         + 
Sbjct: 429 LRDGAWEGELLHTKQDGSKVTVASRWTLQRDEDGLPLASLQINND-ISDRKIAEFALRDS 487

Query: 319 ENLTPETVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
           + +    +D  P   +      +    N +F  +   KS  DI         L  P+   
Sbjct: 488 QQMLQLVMDNIPQFIYWKDRDFIYRGCNQNFARILGLKSPTDIIGLTDYD--LPIPEEQA 545

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
            +            T      +  T      +++ +        N     +       + 
Sbjct: 546 EHYRAISRDILETNTPQYHLLKTFTSALPNSSTMWVDVSKVPLTNGEDSVIGIMCSFEDI 605

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
            D +  +  +     +  S  E  + GIA  N EG +L  N+    + GY  E++L   F
Sbjct: 606 TDRKQAEVAIAESEQRFRSTFEQAAVGIAQTNMEGKLLLVNQKFCDILGYSREELLENKF 665

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---Y 554
                     +   Y+ ++L                K  +L+   + +  L         
Sbjct: 666 QNITHPEDLKIELAYINQLL-TGELNIYSMEKRFLRKNGELVWGNLTVSLLREQDGGEYL 724

Query: 555 SLTMHDISEWKQEKNKLSHAKKI--------------AEKESSHKSDFLARVSHEIRTPL 600
              + DI E K+ +  L    +                 K +     F   VSH+++ PL
Sbjct: 725 MAVVEDIRERKEAQEALQKRAQELAKTTRILSQTATVLRKRNQELDQFAYVVSHDLKAPL 784

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
            AI   S  I+      +      +  N +    + +  +++ LL  S++  G++    E
Sbjct: 785 RAIANLSSWIEEDLSEAMTEDTQHQ-MNLLRGRVHRMEALIDALLQYSRV--GRIQTASE 841

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH-FT 719
            V++   ++E I  +          ++    + +P +  +   ++Q+  N++SNA+   +
Sbjct: 842 IVNVASLLAEIIDSIAPPE-----SLKVEVGSGMPILTTERVLLQQVFANLISNAVKHHS 896

Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
              G + IS      +     V D G G+     +K    F  +    + + E TG+GL 
Sbjct: 897 SKSGSVKISLE-EKEDFYEFAVTDDGPGIAPQYHDKVFVIFQTLEA--RDKVENTGIGLS 953

Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           L K +V+   G   + S+  +G      +P
Sbjct: 954 LVKKIVENQGGTIKLESSEGQGATFRFTWP 983



 Score =  100 bits (250), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 84/229 (36%), Gaps = 7/229 (3%)

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
           +IE++  L+ +L   KL  +   + +  +   +    A        W    +       F
Sbjct: 148 EIEMSPQLTNILLKGKLQMDTLRQQINNFVVSQKEFQAIIDEERRHWVDLTNFVQIAALF 207

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
                   +         ++  R  +  ++    ++ ++++  +DGI  ++ +G I S N
Sbjct: 208 VGLLGGGASWYLFDRLDRELTNR--EASLQESKTRIQAVVDNAADGILTLDEQGNIESFN 265

Query: 479 RAVSKLFGYPVEDILRKPFTVFLE-QNTPSVMNHYLTEILSLDLRQ--TLEKITLGSTKE 535
            A  K+FG+  ++++ +     +          +YL   L+    +    ++   G  K 
Sbjct: 266 LAAEKIFGWEGKEVIGQNLRKLIAKPAHEDSTGNYLQNFLTNSTAKLNICQQEIQGIRKN 325

Query: 536 EKLLSLRIIIK--KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES 582
                + + +   +L     +     DI+E K+ +  L    ++ +  +
Sbjct: 326 GATFPMELAVSEMRLASGRLFIGICRDITERKEAEKTLRKQSQLLDLAN 374



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 26/266 (9%), Positives = 83/266 (31%), Gaps = 8/266 (3%)

Query: 53  NFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFK 112
           +F D      +     +SE  F        V      +  G L  ++++    +G    +
Sbjct: 601 SFEDITDRKQAEVAIAESEQRFRSTFEQAAVG-IAQTNMEGKLLLVNQKFCDILGYSREE 659

Query: 113 MIGMRLCDVSDILHIDPNNHIGDLLKRQ--NTWYGKTTLWPIEGTNLYVPIDLAALPIYS 170
           ++  +  +++    +       + L     N +  +       G  ++  + ++ L    
Sbjct: 660 LLENKFQNITHPEDLKIELAYINQLLTGELNIYSMEKRFLRKNGELVWGNLTVSLL--RE 717

Query: 171 RNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP 230
           ++    G     +V   R   + +   ++  ++ +    I    ++V +++     Q + 
Sbjct: 718 QDG---GEYLMAVVEDIRERKEAQEALQKRAQELAKTTRILSQTATVLRKRNQELDQFAY 774

Query: 231 PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG 290
                +K  + ++    +  ++ L          + + L  +       ++   +    G
Sbjct: 775 VVSHDLKAPLRAIANLSSWIEEDLSEAMTEDTQHQMNLLRGRVHRMEALIDALLQYSRVG 834

Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFD 316
            +Q  S+               A  +
Sbjct: 835 RIQTASEIVNVASLLAEIIDSIAPPE 860



 Score = 48.5 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 36/381 (9%), Positives = 91/381 (23%), Gaps = 31/381 (8%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAF-KMIGMRLCDV-SDILHIDPNNHIGDLLKRQNT 142
           F +  D     +  ++   + +G  +   +IG+   D+       +    I   +   NT
Sbjct: 501 FIYWKDRDFIYRGCNQNFARILGLKSPTDIIGLTDYDLPIPEEQAEHYRAISRDILETNT 560

Query: 143 WYGKTT-----LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG 197
                        P   T   + +D++ +P+ +      G                    
Sbjct: 561 PQYHLLKTFTSALPNSST---MWVDVSKVPLTNGEDSVIGIM--CSFEDITDRKQAEVAI 615

Query: 198 KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE-----YYAHKDD 252
              +++F    E      +    +  +         +   ++   L        +     
Sbjct: 616 AESEQRFRSTFEQAAVGIAQTNMEGKLLLVNQKFCDILGYSREELLENKFQNITHPEDLK 675

Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES---FEYLSHRNHP 309
           +       LLT E +    ++ F   N            L+               R   
Sbjct: 676 IELAYINQLLTGELNIYSMEKRFLRKNGELVWGNLTVSLLREQDGGEYLMAVVEDIRERK 735

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
                  +      +T         V    N       F  +  +     +     LS+ 
Sbjct: 736 EAQEALQKRAQELAKTTRILSQTATVLRKRNQEL--DQFAYVVSHDLKAPLRAIANLSSW 793

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
           ++              +           A +  +         + +    +     E + 
Sbjct: 794 IEEDLSEAMTEDTQHQMNLLRGRVHRMEALIDAL---------LQYSRVGRIQTASEIVN 844

Query: 430 QNGIEPEDVDTRINKRKMEIE 450
              +  E +D+      +++E
Sbjct: 845 VASLLAEIIDSIAPPESLKVE 865


>gi|220931586|ref|YP_002508494.1| multi-sensor signal transduction histidine kinase [Halothermothrix
           orenii H 168]
 gi|219992896|gb|ACL69499.1| multi-sensor signal transduction histidine kinase [Halothermothrix
           orenii H 168]
          Length = 652

 Score =  322 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 92/368 (25%), Positives = 170/368 (46%), Gaps = 21/368 (5%)

Query: 457 ILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPF-TVFLEQNTPSVMNHYLT 514
           IL+  ++ I I  ++EG I   N+   ++ GY  E+I+ K + T F+ ++    +   L 
Sbjct: 270 ILD-ITEAIFIFIDKEGKITLINKKGCEVLGYQEEEIIGKEWVTNFVYKDDRERVRKTLE 328

Query: 515 EILSLD--LRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNK 570
            I++         E   +      + +  +  + K           +  DI++ K  + +
Sbjct: 329 NIVTCGCNNGNNFEHQVVTRDNTRRTILWKNTVLKDERGQIRGVLSSGLDITDKKLLEEE 388

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI---IGFSEVIKNQRFGPLGNPRYIEYA 627
           L +        +  +++F A +SHE +TPL  I   +   E   ++   PL   +   Y 
Sbjct: 389 LEY--------NKLRTEFFANLSHEFKTPLNVIFSALHLIEWSLDKN--PLKKDKIKSYL 438

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
             I  +   +L ++ +LLDI+KI++    L+     + + V  A++ V+ + N K   I 
Sbjct: 439 KTITHNSYRLLRLITNLLDITKIDANSYQLNICNCDIVKIVKSAVNSVKGHINNKTRKIV 498

Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747
            +   N   I  D   +++I  N+LSNAI FT  G +I +       + + + V+DTG+G
Sbjct: 499 FNTNVNEKIIACDPFDIERILYNLLSNAIKFTGEGDKITVEIK-DRGQSLNIIVKDTGIG 557

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           +     +   K F Q+  S +   EG+GLGL L K++V+ + G   I S P KG+   I 
Sbjct: 558 IPEEMQDYIFKRFRQVDKSFRRNNEGSGLGLSLTKSLVELHGGSISIESKPGKGSTFIIK 617

Query: 808 FPLYDTSH 815
            P++  S+
Sbjct: 618 LPVFQVSN 625



 Score = 42.3 bits (98), Expect = 0.37,   Method: Composition-based stats.
 Identities = 16/121 (13%), Positives = 36/121 (29%), Gaps = 17/121 (14%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK------ 138
           F + ID  G +  I+++  + +G    ++IG     V++ ++ D    +   L+      
Sbjct: 278 FIF-IDKEGKITLINKKGCEVLGYQEEEIIGKEW--VTNFVYKDDRERVRKTLENIVTCG 334

Query: 139 --RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRAL 196
               N +  +         N    I      +     +  G    G+             
Sbjct: 335 CNNGNNFEHQVVTR----DNTRRTILWKNTVLKDERGQIRGVLSSGL--DITDKKLLEEE 388

Query: 197 G 197
            
Sbjct: 389 L 389


>gi|87309249|ref|ZP_01091385.1| PAS protein [Blastopirellula marina DSM 3645]
 gi|87287888|gb|EAQ79786.1| PAS protein [Blastopirellula marina DSM 3645]
          Length = 1309

 Score =  322 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 94/650 (14%), Positives = 214/650 (32%), Gaps = 43/650 (6%)

Query: 183  IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS------PPPHLRM 236
            I+   R   +   +                  + +      +           P P +  
Sbjct: 539  IMQEEREHRELLRITLASIGDAVISTNAAGRVTFLNPVAESLTGWSQQDAIGCPLPEVFS 598

Query: 237  KNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS 296
                S+        +  L+  K   L +    + +      I+ +    +   G +    
Sbjct: 599  IVNESTRLPVENPAEKALREGKIVGLANHTVLIAKTGTERFIDDSAAPIRNAEGEI---V 655

Query: 297  KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS----------HGNLFYANP 346
                 +    +  ++ +     E       +     F V                   NP
Sbjct: 656  GAVLVFRDISDRRAIESESRLHEERYRTLFNTIDEGFCVVEMIFDAAGKPVDYQFLELNP 715

Query: 347  SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
            +F   T   +            + +     +    +                +   ++  
Sbjct: 716  AFEKQTGLTNA-------IGERMRELAPDHEEKWFEIYGQVAQTGESTRFVHQAKALE-- 766

Query: 407  RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD-GI 465
                  +        +     +       +    R  ++       +  +++E   D  I
Sbjct: 767  -GRWFDVYAFRVGGESSQRVALLF----TDITQRRKTEQDRRDSEERFRTLVEQVQDYAI 821

Query: 466  AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
             + + +G   S N  V ++ G+   + + +     +      V      E+       + 
Sbjct: 822  FMTDPQGRATSWNEGVERVLGFDELEFIGQDIVSLIFTPEDVVSGIAQAELDQAAAVGSA 881

Query: 526  EKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKE 581
                    K+        +   L   +     +   M D +E K+ +++L        + 
Sbjct: 882  SDDRWMLRKDGTRFWAAGVTTGLLDENNKLLGFMKVMRDQTERKRLEDELRQVAADLSES 941

Query: 582  SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
               K++FLA + HE+R PL  I    E++K  +  P            ++R    ++ ++
Sbjct: 942  DRRKTEFLATLGHELRNPLAPIRTGLEMMKMVKNDPELIENVR---GTMERQTQQMVRLI 998

Query: 642  NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701
            +DLLD+S+I SGK+ L    ++L+E +  A+   Q + +E    ++ +       + AD 
Sbjct: 999  DDLLDVSRITSGKIELRTCQITLNEVIRSAVEATQPFIDEAGHTLQVTLPETPIVLDADP 1058

Query: 702  RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761
              + Q+  N+L+N+  +TP GG I ++     N + I+ ++D G+G+   +  +  + F 
Sbjct: 1059 NRLAQVFSNLLNNSSKYTPDGGHIWLAAQCE-NGKAIVTIKDDGLGIPLDQQSQIFEMFA 1117

Query: 762  QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFPL 810
            QI    ++   G G+GL L K +V+ + G   + S    +G+   +  P+
Sbjct: 1118 QIDRPLEMGYTGLGIGLTLVKQLVELHGGTIDVQSEGADQGSEFFVRLPI 1167



 Score =  112 bits (280), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 65/566 (11%), Positives = 129/566 (22%), Gaps = 76/566 (13%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH-----IDPNNHIGDLLKRQNT- 142
            D  G +  ++    K         IG  L  V  I++     I  N  +  L +     
Sbjct: 266 TDVAGNVTYLNTIAEKLTNWKDDDAIGQPLTTVFHIVNETTRQIVENPALKALREGAIVG 325

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
               T L   +G      ID +A PI  R+ + +G     I              +   +
Sbjct: 326 LANHTILIAKDG--AEHFIDDSAAPIRDRHGKIAG--SVLIFRDISERRQSEIALEEKRR 381

Query: 203 KFS---------------------------HLHEIKKGHSSVEKEKYDIFSQQSPPPHLR 235
                                            +          E   +   Q+      
Sbjct: 382 LLQLGAEIGAILTKEDSLPTMLQDCAKSLVANLDAALARIWTLNEAEQVLELQASAGMYT 441

Query: 236 MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN 295
             +   S       K  ++  EK P LT+     P   +              +  +  +
Sbjct: 442 HIDGGHSRIPVGQFKIGLIAEEKTPHLTNSVIGDPRVPEQEWAQREGLVAFAGYPLIVAD 501

Query: 296 SKESFEYLSHRNHPSLS----------------------AYFDEGENLTPETVDKCPIPF 333
                  +  R   S                            E   L   T+       
Sbjct: 502 RLVGVMGIFARQALSERTLHAMNSVSKEIALGLLNRQIMQEEREHRELLRITLASIGDAV 561

Query: 334 F-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
               + G + + NP    LT +   D I             + +      P      +  
Sbjct: 562 ISTNAAGRVTFLNPVAESLTGWSQQDAI-GCPLPEVFSIVNESTRLPVENPAEKALREGK 620

Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
            +  +     I         +        N   E +    +  +  D R  + +  +   
Sbjct: 621 IVGLANHTVLIAKTG-TERFIDDSAAPIRNAEGEIVGAVLVFRDISDRRAIESESRLHEE 679

Query: 453 QLCSILEATSDGIAI----INREGI-----ILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
           +  ++     +G  +     +  G       L  N A  K  G       R      L  
Sbjct: 680 RYRTLFNTIDEGFCVVEMIFDAAGKPVDYQFLELNPAFEKQTGLTNAIGERMR---ELAP 736

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
           +          ++                  E +   +         S   +L   DI++
Sbjct: 737 DHEEKWFEIYGQVAQTGESTRFVHQ--AKALEGRWFDVYAFRVGGESSQRVALLFTDITQ 794

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFL 589
            ++ +     +++          D+ 
Sbjct: 795 RRKTEQDRRDSEERFRTLVEQVQDYA 820



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/385 (10%), Positives = 95/385 (24%), Gaps = 29/385 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH----IDPNNHIGDLLKRQNTW- 143
            +A G +  ++       G      IG  L +V  I++    +   N     L+      
Sbjct: 564 TNAAGRVTFLNPVAESLTGWSQQDAIGCPLPEVFSIVNESTRLPVENPAEKALREGKIVG 623

Query: 144 -YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
               T L    GT  +  ID +A PI +   E  G     +           +  +  ++
Sbjct: 624 LANHTVLIAKTGTERF--IDDSAAPIRNAEGEIVGA--VLVFRDISDRRAIESESRLHEE 679

Query: 203 KFSHLHEIKKG---------HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253
           ++  L                ++ +   Y                            D  
Sbjct: 680 RYRTLFNTIDEGFCVVEMIFDAAGKPVDYQFLELNPAFEKQTGLTNAIGERMRELAPDHE 739

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL--SHRNHPSL 311
            K  +       ++    +       L       Y   +   S +    L          
Sbjct: 740 EKWFEIYG-QVAQTGESTRFVHQAKALEGRWFDVYAFRVGGESSQRVALLFTDITQRRKT 798

Query: 312 SAYFDEGENLTPETVDKCPI-PFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
                + E      V++      F+    G     N     +  +  ++ I     +S +
Sbjct: 799 EQDRRDSEERFRTLVEQVQDYAIFMTDPQGRATSWNEGVERVLGFDELEFIGQ-DIVSLI 857

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
                +    A   +    +  +          ++ +     A         ++  + + 
Sbjct: 858 FTPEDVVSGIAQAELDQAAAVGSASD---DRWMLRKDGTRFWAAGVT-TGLLDENNKLLG 913

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQL 454
              +  +  + +  + ++      L
Sbjct: 914 FMKVMRDQTERKRLEDELRQVAADL 938



 Score = 78.5 bits (192), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 25/197 (12%), Positives = 58/197 (29%), Gaps = 8/197 (4%)

Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK-MEIEVMQ 453
               R    +       A+T I                +   ++  +      +  +  +
Sbjct: 192 HEQLRTRAQESESSFRTAITTILLSALVGIALVCAVYYLLQRNLRQKEKAAAILAEQKER 251

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE---QNTPSVMN 510
           L   L +  D +   +  G +   N    KL  +  +D + +P T       + T  ++ 
Sbjct: 252 LRITLASIGDAVISTDVAGNVTYLNTIAEKLTNWKDDDAIGQPLTTVFHIVNETTRQIVE 311

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQ 566
           +   + L       L   T+   K+     +      +               DISE +Q
Sbjct: 312 NPALKALREGAIVGLANHTILIAKDGAEHFIDDSAAPIRDRHGKIAGSVLIFRDISERRQ 371

Query: 567 EKNKLSHAKKIAEKESS 583
            +  L   +++ +  + 
Sbjct: 372 SEIALEEKRRLLQLGAE 388



 Score = 46.9 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 30/265 (11%), Positives = 68/265 (25%), Gaps = 12/265 (4%)

Query: 54   FTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM 113
            FTD  Q   +  +  DSE  F            +  D  G     +E + + +G    + 
Sbjct: 789  FTDITQRRKTEQDRRDSEERFRTLVEQVQDYAIFMTDPQGRATSWNEGVERVLGFDELEF 848

Query: 114  IGMRLCDVSDILHIDPNNHIGDLL---KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYS 170
            IG  +  +        +      L       +      +   +GT  +       L    
Sbjct: 849  IGQDIVSLIFTPEDVVSGIAQAELDQAAAVGSASDDRWMLRKDGTRFWAAGVTTGL--LD 906

Query: 171  RNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP 230
             N +  GF    ++             +++    S     K    +    +        P
Sbjct: 907  ENNKLLGFMK--VMRDQTERKRLEDELRQVAADLSESDRRKTEFLATLGHELRN-----P 959

Query: 231  PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG 290
               +R   ++  + +      + ++             + +  D   I   +   +    
Sbjct: 960  LAPIRTGLEMMKMVKNDPELIENVRGTMERQTQQMVRLIDDLLDVSRITSGKIELRTCQI 1019

Query: 291  TLQNNSKESFEYLSHRNHPSLSAYF 315
            TL    + + E        +     
Sbjct: 1020 TLNEVIRSAVEATQPFIDEAGHTLQ 1044


>gi|261342654|ref|ZP_05970512.1| sensor histidine kinase/response regulator [Enterobacter
           cancerogenus ATCC 35316]
 gi|288315302|gb|EFC54240.1| sensor histidine kinase/response regulator [Enterobacter
           cancerogenus ATCC 35316]
          Length = 778

 Score =  322 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 88/435 (20%), Positives = 183/435 (42%), Gaps = 16/435 (3%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L            +L  +Q     +     I   +  +         ++ E
Sbjct: 81  EESRQRLSKLVDKLEEMRERDLKL-NVQLKDNIAQLNQEITDREKAEAERQTTLEQLKIE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             +  + + ++E +   L S L+A+ D +   N +      NRA+  L G   + ++   
Sbjct: 140 MKEREVTQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVNLK 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCY 554
                 +   + +     ++   ++  T E+        +    +R +    ++      
Sbjct: 200 PQDVYSEEAAAKVMETDEKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGL 259

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+        +   E+ S  K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 260 MGFGRDITERKR-------YQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTD 312

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     +Y   I  S   + +I ND++D+ K+E  K+ L  +PV     +++  +L
Sbjct: 313 LTA----EQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTGFLADLENL 368

Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
             L A +K +         +P  ++ D   ++QI  N++SNA+ FTP GG++ +   +  
Sbjct: 369 SGLQAQQKGLSFVMEPTLPLPHKVVTDGTRLRQILWNLISNAVKFTPHGGRVAVRIRNEE 428

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMGKF 792
            + +   V D+G+G+   E +K    + Q+ +SQ  +   GTG+GL ++K +  +  G  
Sbjct: 429 GDMLRFEVEDSGIGIPQEEQDKIFAMYYQVKDSQGGKPATGTGIGLAVSKRLAKSMGGDI 488

Query: 793 YIFSTPAKGTLIEII 807
            + S P KG+   + 
Sbjct: 489 TVSSQPGKGSTFTLT 503



 Score = 41.2 bits (95), Expect = 0.84,   Method: Composition-based stats.
 Identities = 14/161 (8%), Positives = 38/161 (23%), Gaps = 8/161 (4%)

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIE 361
           +  +         ++  +     +D  P   F  +        N +  LLT       + 
Sbjct: 138 IEMKEREVTQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLV- 196

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                  L      S+  A K +           +      + +                
Sbjct: 197 ------NLKPQDVYSEEAAAKVMETDEKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYY 250

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
           ++  +     G   +  + +  +  +E       + +   S
Sbjct: 251 DRVGKRHGLMGFGRDITERKRYQDALERASRDKTTFISTIS 291


>gi|220904867|ref|YP_002480179.1| GAF sensor hybrid histidine kinase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219869166|gb|ACL49501.1| GAF sensor hybrid histidine kinase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 685

 Score =  322 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 93/369 (25%), Positives = 169/369 (45%), Gaps = 17/369 (4%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           ++  +  QL  IL+A  + + I++ E   IL +N++V++ F  P E    K     + ++
Sbjct: 178 RLRQKHKQLRDILDAFPNPVCIVDMETNRILFSNKSVAETFPTPQESEDDKCHKRLMGRD 237

Query: 505 TP-SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
           +P     + +        + T +      T       +  +IK             DI++
Sbjct: 238 SPCPYCTNPIIRRTGEAYQWTYQNEVTNRT----YTVVDKVIKWDNDRPVRLSISTDITD 293

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + +++    K+ A   S  K++FLA +SHEIRTPL  IIG + +          +   
Sbjct: 294 ILRTRHE----KQSAVIASQAKTEFLAHMSHEIRTPLNGIIGLTHLALQ----SGPDGEL 345

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            EY   I  S   +L I+ND+LD+SKIE+ KM L      ++E +    + V+    +K 
Sbjct: 346 KEYLLKIRSSSTNLLAIINDVLDLSKIEANKMELENVNFMVEEVLDFVHTSVRFAMEQKG 405

Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNE-EVILR 740
           +  +    +++P ++  D   +KQ+ LN++SNA+ FT  G   + I      +   +   
Sbjct: 406 LEYQCHLDDDVPLKLWGDSLRLKQVLLNLMSNAVKFTARGKVGLRIHRQQDDDGDWLHFE 465

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V DTG+G+++   +    P+ Q  +S   R  GTGLGL + K + +   G  +  S   +
Sbjct: 466 VSDTGMGISHEYQQHLFDPYTQANSSISRRFGGTGLGLSICKRIAELMQGSLWCESRLGE 525

Query: 801 GTLIEIIFP 809
           G+   +  P
Sbjct: 526 GSRFHLRIP 534


>gi|168702420|ref|ZP_02734697.1| multi-sensor hybrid histidine kinase [Gemmata obscuriglobus UQM
           2246]
          Length = 1013

 Score =  322 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 101/759 (13%), Positives = 223/759 (29%), Gaps = 76/759 (10%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD--ILHIDPNNHIGDLLKRQNTWYGKT 147
                +   +    +     A   +G  + D         D +         +    G  
Sbjct: 156 GPDRRVTLFNPAAERMFRCPAAGALGRPVGDFIPGTPSAGDGDAAPAQAFPARGIRQG-- 213

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                       P +++     +  R F       IV          +  +R  +    +
Sbjct: 214 --------GDEFPAEVSVSLGSTGGRRFYTL----IVRDVTERERMASELRRTGELLGAV 261

Query: 208 HEIKKGHSSVEKEKYDIF---SQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
            E       V+          S  +          +                    L   
Sbjct: 262 VEGTTDAIFVKDRAGRYLLANSAAAAVMGRPAAEVLGRSDADLFDPVSARVIRSNDLEVI 321

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
           E   +   E+  T      T        +N        L      +         +    
Sbjct: 322 ETGRVVTDEEALTTGGQLRTFSVTKAPHRNADGAVVGVLGISRDVTERNRLAGERDALLA 381

Query: 325 TV----DKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
            +    ++ P+ + ++     +   NP+   +  +     + ++G      D    S  +
Sbjct: 382 RLRLQIERMPLGYILFGADARVVEWNPAAERIFGHPRSAALGMSG-----FDLMPASSQH 436

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
               +          +A +    +  +    +                     +  +   
Sbjct: 437 EAGVLFERIRSGDM-SAHSVNENLTRDGRVIVCEWHN-TPLFGDDGRFTGFLCLTQDVTA 494

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIIN---REGIILSTNRAVSKLFGYPVEDILRKP 496
            R  +  + +        ++A + GI I +    +  ++  +    +L GY   +++ + 
Sbjct: 495 RRAAEEALRVRDR----AIQAVTQGILISDAEHPDHPVVFASPGFERLTGYTAAEVMGRN 550

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--- 553
           + +   ++T +     +   +   +   +    L   K+       + I  +  ++    
Sbjct: 551 WHLLQGRDTSAEAVAQVRAAVRAGVPCAV--ELLNYKKDGSPFWSELSISPVRDATGRLT 608

Query: 554 -YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
            +     D++  +  +++   A+K+              V+H+    LT I G+S ++ N
Sbjct: 609 HFIGVHTDVTRRRNLEDQFRQAQKMD-----ALGRLAGGVAHDFNNLLTVINGYSTLLLN 663

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
           +           E+   I  +G    D+   LL  S+    +  L  + + L        
Sbjct: 664 EVGPKSP---LREHIEEIRHAGKRSADLTRQLLAFSR----QQVLAPQVLDLSTVTRGTE 716

Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST--- 729
            L++       I +R S    +  + AD   ++Q+ +N+  NA    P+GG + +     
Sbjct: 717 KLLR-QLLGADIRLRVSAGARVWPVRADPGQIEQVLMNLAVNARDAMPTGGALTVEIGNA 775

Query: 730 -----------THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
                             V L V DTG GM+   L +  +PF     +    G GTGLGL
Sbjct: 776 ELDEGYAREHRGARPGPHVRLSVSDTGTGMSQDVLSRIFEPFFTTKAA----GHGTGLGL 831

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFP-LYDTSHP 816
                +V+ + G   + S P  GT  +I FP   + + P
Sbjct: 832 STVYGIVEQSAGHLAVTSAPGAGTRFDIYFPRAAEPAAP 870



 Score =  121 bits (304), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 33/399 (8%), Positives = 89/399 (22%), Gaps = 13/399 (3%)

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247
                     +   +  S +            ++       +     R     +      
Sbjct: 126 DAVERALGQVRTECQLASLIAAAHDAIIGAGPDRRVTLFNPAAERMFRCPAAGALGRPVG 185

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
                           +   + P +      +          G+       +        
Sbjct: 186 --DFIPGTPSAGDGDAAPAQAFPARGIRQGGDEFPAEVSVSLGSTGGRRFYTLIVRDVTE 243

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
              +++       L    V+      FV    G    AN +   +    + + +  +   
Sbjct: 244 RERMASELRRTGELLGAVVEGTTDAIFVKDRAGRYLLANSAAAAVMGRPAAEVLGRS--- 300

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
              L  P  +       + +  + R      A               +       N    
Sbjct: 301 DADLFDPVSARVIRSNDLEVIETGRVVTDEEALTT-----GGQLRTFSVTKAPHRNADGA 355

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
            +   GI  +  +      + +  + +L   +E    G  +   +  ++  N A  ++FG
Sbjct: 356 VVGVLGISRDVTERNRLAGERDALLARLRLQIERMPLGYILFGADARVVEWNPAAERIFG 415

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
           +P    L       +  ++          I S D+        L       +        
Sbjct: 416 HPRSAALGMSGFDLMPASSQHEAGVLFERIRSGDMSAHSVNENLTRDGRVIVCEWHNTPL 475

Query: 547 KLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
                    +     D++  +  +  L    +  +  + 
Sbjct: 476 FGDDGRFTGFLCLTQDVTARRAAEEALRVRDRAIQAVTQ 514


>gi|228905409|ref|ZP_04069364.1| hypothetical protein bthur0014_64740 [Bacillus thuringiensis IBL
           4222]
 gi|228854229|gb|EEM98932.1| hypothetical protein bthur0014_64740 [Bacillus thuringiensis IBL
           4222]
          Length = 588

 Score =  322 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 83/372 (22%), Positives = 161/372 (43%), Gaps = 25/372 (6%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +  +   E E  +L S+L   +DG+   +R+G I+  N    K+     E  L +     
Sbjct: 233 QQARSSTESERRKLSSVLSHMTDGVIATDRKGDIILLNDPAEKMLNVSRETALDQSVLEV 292

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
           L       ++H   E  S+ L  +                  +I K+   ++     ++D
Sbjct: 293 LGIQEEFTLDHLYEEPDSVLLDFSTRNEPYILRAS-----FSVIQKETGKANGLIAVLYD 347

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           ++E ++ + +              + +F+A VSHE+RTPLT +  + E + +  +     
Sbjct: 348 VTEQERIEGE--------------RREFVANVSHELRTPLTTMRSYLEALTDGAWQDPNI 393

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
                +          ++ +VN LL +SK++S +  L  E V   +  +  I   +  + 
Sbjct: 394 APQ--FLTVTQEETERMIRLVNALLQLSKLDSTEHRLMKEWVDFTDFFNNVIDRFE-MSK 450

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV-IL 739
           E+ +  + SF+     I  D   + Q+  NI+SNA+ ++P GG +          ++  +
Sbjct: 451 EQNVSFKRSFSKKSRFIDMDTDKITQVLYNIISNALKYSPEGGTVT--YRLRDRGDLLEI 508

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V D G+G+    ++K  + F ++  ++  +  GTGLGL +AK M++A+ G  +  S   
Sbjct: 509 SVSDQGMGIPKENVDKIFERFYRVDKARSRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEG 568

Query: 800 KGTLIEIIFPLY 811
           KGT I    P+ 
Sbjct: 569 KGTTIYFTLPMA 580


>gi|170749079|ref|YP_001755339.1| multi-sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
 gi|170655601|gb|ACB24656.1| multi-sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 991

 Score =  322 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 120/641 (18%), Positives = 232/641 (36%), Gaps = 10/641 (1%)

Query: 176 SGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR 235
           +G RGF +V              ++D + + L    +               Q      R
Sbjct: 80  TGERGFVLVGSEDYLRPYTTALTKIDTELTGLGAAAQDPVRAGGPSLAGLIAQKRDFAAR 139

Query: 236 MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN 295
           +     +     A         K  +      +   Q            ++ + G L   
Sbjct: 140 VVEARRNQGFDAAIDLVRTGEGKRLMDAIRAEAAARQAATLEQLATLQAREGWRGLLLFL 199

Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTPETVD----KCPIPF-FVYSHGNLFYANPSFLL 350
           +  +    +      L+    +        +D      P+   F+     + + N +   
Sbjct: 200 TSAAAALGAIVLLARLALVRRQESLRMSRLLDGVLANAPVGLGFLDRDLKIRHMNRALAT 259

Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
           +++     D+             +L+   A        S    +A             + 
Sbjct: 260 MSERGFGADLGAPIWAMLPTLREELAPKLAAALTEGLVSPNVPVAVPTPSAPGGVRHFSM 319

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470
                   E A           +  ++    + + ++     +  S++EA++  +   N 
Sbjct: 320 SFYPLRGEESAAADQSVEGVGLVVVDETIRHLAEARLRRSEERFRSLIEASAAIVWTANP 379

Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530
           EG +     A ++  G          F   +  +  +      T  ++       E    
Sbjct: 380 EGSLHRRQTAWTRFTGQDEAAYAGLGFLDAIHPDDRAHTRAAWTRAVTSLEPYATEHRMR 439

Query: 531 GSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
            ++   + +S+R +    P      +  T  DI+E K+ +  +  A+  AE  ++ KS F
Sbjct: 440 AASGAYRHMSVRAVPILEPDGTLREWVGTHTDITERKEAEAAIEAARAAAEAANAAKSQF 499

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
           LA +SHE+RTPL+A+IG+SE +  +    +G    +     I+ +   +L ++ND+LDIS
Sbjct: 500 LANMSHELRTPLSAVIGYSE-MVQEELEDIGEADLVTDMKKIETNARHLLGLINDVLDIS 558

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIA 708
           KIE+ ++ ++ E   +   V E    V+    +K   +      N+     D+  ++Q  
Sbjct: 559 KIEADRVEIYAEDFEVAAVVQEVAVTVEGLVAKKGNTLALELEPNLGSAHTDVTKLRQCL 618

Query: 709 LNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
           +N+LSNA  FT  G +I ++ T  ++  +   V DTG+GMT  +L K  + F Q   S  
Sbjct: 619 INLLSNAAKFTEDG-RITLAVT-RADGALRFAVTDTGIGMTQEQLGKLFERFTQADASTT 676

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            R  GTGLGL + +A  +   G   + S    GT   +  P
Sbjct: 677 RRFGGTGLGLAITRAFAEMLGGAIAVESRDGAGTTFTLTLP 717



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/233 (7%), Positives = 52/233 (22%), Gaps = 8/233 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D    ++ ++  L           +G  +  +   L  +    +   L           
Sbjct: 244 LDRDLKIRHMNRALATMSERGFGADLGAPIWAMLPTLREELAPKLAAALTEGLVSPNVPV 303

Query: 149 LWPI-EGTNLYVPIDLAALPIYSRNREFSG--FRGFG-IVHVNRVDNDPRALGKRLDKKF 204
             P            ++  P+       +     G G +V    + +   A  +R +++F
Sbjct: 304 AVPTPSAPGGVRHFSMSFYPLRGEESAAADQSVEGVGLVVVDETIRHLAEARLRRSEERF 363

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSP----PPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
             L E           +  +  +Q+                   +     D       + 
Sbjct: 364 RSLIEASAAIVWTANPEGSLHRRQTAWTRFTGQDEAAYAGLGFLDAIHPDDRAHTRAAWT 423

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
              +       +      +            +        E++      +   
Sbjct: 424 RAVTSLEPYATEHRMRAASGAYRHMSVRAVPILEPDGTLREWVGTHTDITERK 476



 Score = 40.4 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 35/392 (8%), Positives = 83/392 (21%), Gaps = 31/392 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQNTWY 144
            W  +  G L        +  G       G+   D                 +     + 
Sbjct: 374 VWTANPEGSLHRRQTAWTRFTGQDEAAYAGLGFLDAIHPDDRAHTRAAWTRAVTSLEPYA 433

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            +  +    G   ++ +   A+PI   +         G         +  A  +      
Sbjct: 434 TEHRMRAASGAYRHMSVR--AVPILEPDGTLR--EWVGTHTDITERKEAEAAIEAARAAA 489

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
              +  K    +    +              ++ ++  + E     D          L  
Sbjct: 490 EAANAAKSQFLANMSHELRTPLSAVIGYSEMVQEELEDIGEADLVTDMKKIETNARHLLG 549

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
             + + +        +  Y +      +      + E L  +   +L+   +        
Sbjct: 550 LINDVLDISKIEADRVEIYAEDFEVAAVVQEVAVTVEGLVAKKGNTLALELEPNLGSAHT 609

Query: 325 --------TVDKCPIPFFVYSHGNLFYANPSF--LLLTKYKSVDDIEIAGGLSTLLDAPK 374
                    ++           G +  A       L               L  L +   
Sbjct: 610 DVTKLRQCLINLLSNAAKFTEDGRITLAVTRADGALRFAVTDTGIGMTQEQLGKLFERFT 669

Query: 375 LSDNNAIKPV-----------MLYRSDRTCIAASAR-----LHTIQWNRENSLAMTFIPF 418
            +D +  +                      IA  +R       T+               
Sbjct: 670 QADASTTRRFGGTGLGLAITRAFAEMLGGAIAVESRDGAGTTFTLTLPARFETGAGEDAG 729

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450
             A+   E      ++ +     +  R +E E
Sbjct: 730 PAASDPGERGTILVVDDDAATRDLLARFLERE 761


>gi|313113963|ref|ZP_07799519.1| response regulator receiver domain protein [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310623726|gb|EFQ07125.1| response regulator receiver domain protein [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 982

 Score =  322 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 97/419 (23%), Positives = 181/419 (43%), Gaps = 14/419 (3%)

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
            +       I    A      +    +       R    ++         +     D   
Sbjct: 291 DKLWFHTVQIVAGIAFGLAVLIILLILRRSHTTLRRKDTEILYRDELFQKLSLNVDDVFL 350

Query: 467 IINREG-IILSTNRAVSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
           +++ +   +   +  V +L G P +++ +  +       ++ P    ++L  +LS   ++
Sbjct: 351 MLDAKTSKVDYVSPNVERLLGIPWKEVRQDARALAALHPKDDPDRDKNFLEGLLS-GQQR 409

Query: 524 TLEKITLGS-TKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES 582
             +       TKE +      +  ++   + Y L + D +  +Q    LS A   AE  +
Sbjct: 410 EWDFEFEHRETKERRWFHNIAMGSEVEGRTKYILVLSDRTADRQVNQALSDAVAAAETAN 469

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
             KS FL+ +SH+IRTP+ AIIGF+ +  +         R  +Y      S N +L ++N
Sbjct: 470 RAKSTFLSNMSHDIRTPMNAIIGFTTLALSNID---DKNRVKDYLAKTLASSNHLLSLIN 526

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS-FANNIPRILADL 701
           D+LD+S+IESGK++L    V+L + + +  ++V      K++ +           +  D 
Sbjct: 527 DVLDMSRIESGKIHLEEVEVNLSDVLHDLKTIVSGQIYAKQLELYMDAMDVTDEDVYCDK 586

Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSN-----EEVILRVRDTGVGMTNYELEKA 756
             + Q+ LN+LSNAI FTP+GG + +     +       +   RV+D G+GM+    +K 
Sbjct: 587 TRLNQVLLNLLSNAIKFTPAGGTVSVRVRQLAGAVRGCGQYEFRVKDNGIGMSQEFAKKI 646

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            +PF +   S   R +GTGLG+ + K +VD   G   + +   KG+   I  P+   + 
Sbjct: 647 FEPFERERTSTVSRIQGTGLGMAITKNIVDMMGGTIEVQTAQGKGSEFIIRVPMRAQAE 705


>gi|152977664|ref|YP_001377181.1| multi-sensor signal transduction histidine kinase [Bacillus cereus
           subsp. cytotoxis NVH 391-98]
 gi|152026416|gb|ABS24186.1| multi-sensor signal transduction histidine kinase [Bacillus
           cytotoxicus NVH 391-98]
          Length = 619

 Score =  322 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 84/375 (22%), Positives = 157/375 (41%), Gaps = 23/375 (6%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +  +   E E  +L S+L   +DG+   +R+G I+  N    K+     E  L +     
Sbjct: 264 QQARSSTESERRKLSSVLSHMTDGVIATDRKGDIILLNDPAEKMLNVSRETALDQSILEI 323

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
           L       ++H   E  S+ L  +                  +I K    ++     ++D
Sbjct: 324 LGIQEEFTLDHLYEEPDSVLLDFSTRNEPYILRAS-----FSVIQKDTGKANGLIAVLYD 378

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           ++E ++                  + +F+A VSHE+RTPLT +  + E + +  +     
Sbjct: 379 VTEQERI--------------DRERREFVANVSHELRTPLTTMRSYLEALSDGAWKDPNI 424

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
                +          ++ +VN LL +SK++S +  L  E V   E  +  I   +  + 
Sbjct: 425 APQ--FLTVTQEETERMIRLVNALLQLSKMDSTEYRLMKEWVDFTEFFNNVIDRFE-MSK 481

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
           E+ ++   SF+     +  D   + Q+  N++SNA+ ++P GG I         + + + 
Sbjct: 482 EQNVIFNRSFSKKARFVDMDTDKITQVLYNVISNALKYSPEGGTITYRLR-DRGDMLEIS 540

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V D G+G+    ++K  + F ++  ++  +  GTGLGL +AK M+ A+ G  +  S   K
Sbjct: 541 VSDQGMGIPKENVDKIFERFYRVDKARSRQMGGTGLGLAIAKEMIIAHGGSIWAKSEEGK 600

Query: 801 GTLIEIIFPLYDTSH 815
           GT I    PL     
Sbjct: 601 GTTIYFTLPLAKEEE 615


>gi|310659191|ref|YP_003936912.1| sensor protein [Clostridium sticklandii DSM 519]
 gi|308825969|emb|CBH22007.1| Sensor protein [Clostridium sticklandii]
          Length = 427

 Score =  322 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 87/369 (23%), Positives = 177/369 (47%), Gaps = 29/369 (7%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
             ++    +L +IL++ S+GI  I++E  +L  N+A   +F Y   D   +PF + ++  
Sbjct: 76  ETLKDRNSKLKAILKSISNGIVAIDKEQNVLLMNKAAKNIFDYHETDYEGRPFEMIVK-- 133

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHD 560
              ++   L      +   T        T +     + +   +L  +        + + D
Sbjct: 134 DQRLLLCILDLFHKRERAHT---QLHLGTVD---YKINVDPIRLDDNDKIVIGAIVNIED 187

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I+E  + +                +SDF+A V+HE++TPLT+I GF E +K+     +  
Sbjct: 188 ITERIKLET--------------IRSDFVANVTHELKTPLTSINGFVETLKSNAG--INK 231

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
               ++ + I+   N +  +++D+L +S IE  K +   EPV+  + ++E I+LV     
Sbjct: 232 AMRTKFLDIIEVESNRLQRLIDDILILSFIEGNKSHYSNEPVNFADTINECINLVSETIK 291

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
           +K + I  S  +N   + ++   +KQ+ LN++ NAI ++   G + ++     +++V+  
Sbjct: 292 DKNVTIDFSPIDNQIYLKSNPDLMKQLILNLIDNAIKYSKEEGFVRLTL-LEDSKKVLFS 350

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V D G+G+ + ++++  + F ++  ++  +  GTGLGL + K +V    G   + S   K
Sbjct: 351 VEDDGIGIPSEDIDRIFERFYRVDKARSKKVGGTGLGLAIVKHIVLNLNGNIKVHSELNK 410

Query: 801 GTLIEIIFP 809
           G+   I FP
Sbjct: 411 GSKFIIEFP 419


>gi|75907252|ref|YP_321548.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
 gi|75700977|gb|ABA20653.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
          Length = 1820

 Score =  322 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 126/828 (15%), Positives = 271/828 (32%), Gaps = 112/828 (13%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTWYGK 146
             +  G + + +    +  G     + G  +  +   +  D    + I   + +Q  W G+
Sbjct: 582  TNLQGQILDWNPAAERMFGYSKDHICGQSIS-ILHKVEEDAALNSAIIAEITKQGRWSGE 640

Query: 147  TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                  +G+      +   + +     +        +            L +R +++F  
Sbjct: 641  INFVRQDGSQGI--CETTIVALQDDQGQTVAT--ISVNRDITERKHAELLLRRSEERFQA 696

Query: 207  LHEIKKGHSSVEKEKYDIFSQQSPPPHL--RMKNKVSSLTEYYAHKDDVLK--TEKYPLL 262
                    + +      I                ++     +  +  ++++   E   ++
Sbjct: 697  FMNHSPTPAWITDIDGTIVYLSETYRRTFQLPTQELIGTNIFDIYPPELIQTFRETIQIV 756

Query: 263  TSEESSLPEQEDFHTINLNQY---TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
                  +   E     +         K    +  +        +         A   + E
Sbjct: 757  ARTHQVMETVESVPCSDGTVRDFLVYKFPISSKPDECLIGGIAIDITERKQAEAALRKSE 816

Query: 320  NLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
                  ++      + ++   N  + +  +  L K ++   I       + +        
Sbjct: 817  ERWQLVIEGNQDAIWDWNIITNETFRSARWAELIKEQNYQPIADHADCISRIHPDDYERV 876

Query: 379  NAIKPVMLYRSDRTCIAASARLH-------------TIQWN--RENSLAMTFIPFEKANQ 423
             A++   L R     +    RL              T QW+        +  I       
Sbjct: 877  MAVRQDCLSRKIPNYV-VEYRLRCNDDSYKWVLVHATGQWDERGNPVRMVGSIKDITERI 935

Query: 424  FPENMPQNGIEPEDVDTRINK--RKMEIEVMQLCSILEATSDGIAI-----------INR 470
              +   Q  +    +  +I +  R+         +        +A+            + 
Sbjct: 936  EAQEALQRQLHRTLLLEKITQKIRQSLDSKEIFETAATQIGQALAVDRCLIHSYISHHDP 995

Query: 471  E-------GIILST------------NRAVSKLFG----YPVEDILRKPFTVFLEQNTPS 507
                      +L              NR + ++          ++   P       +   
Sbjct: 996  HIPLVAEYNNVLDYCSMQKWEFTTTGNRHILQMMSQDKAIASANVYTDPLLQTAVPSCCE 1055

Query: 508  VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS------LRIIIKKLPFSSCYSLTMHDI 561
            +    +  + +    +    I L   K  +  +      L  +  +L  +   +  +   
Sbjct: 1056 IGVKSMLAVRTSYQGEPNGAICLHQCKYFRQWTPEEIELLEAVAAQLGIALAQAQLLEQE 1115

Query: 562  SEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
            +  ++E       L  AK+ AE  +  KS+FLA +SHEIRTP+ A+IG + ++ +     
Sbjct: 1116 TRQREELTIKNFALEQAKRAAEAANRAKSEFLAMMSHEIRTPMNAVIGMTGLLLDTELTS 1175

Query: 618  LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
                +  ++   +  SG+ +L I+ND+LD SKIESGK+ L  +P  +   V + I L+  
Sbjct: 1176 ----QQRDFVETVLTSGDALLSIINDILDFSKIESGKLELEEQPFEVRTCVEQVIDLLAA 1231

Query: 678  YANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE- 735
             A +K I +       +P +I  DL  ++QI  N+L+NAI FTP G ++++S     +  
Sbjct: 1232 KAAQKDIELAYLIHPQVPMQIAGDLTRLRQILTNLLNNAIKFTPEG-EVVVSVRSQPSPN 1290

Query: 736  -------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                   E+I  ++DTG+G+    ++   +PF Q   S   +  GTGLGL ++K + +  
Sbjct: 1291 QKTKNCCEIIFTIKDTGIGIAPETMDLLFQPFVQADASMTRKYGGTGLGLVISKRLGEMM 1350

Query: 789  MGKFYIFST--------PA-------------KGTLIEIIFPLYDTSH 815
             G  ++ S         P               G+       +   +H
Sbjct: 1351 GGYLWVESRGCVGGNPPPGWQRKNSISSASVATGSTFYFSMTVPVVAH 1398



 Score =  139 bits (349), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 42/506 (8%), Positives = 138/506 (27%), Gaps = 19/506 (3%)

Query: 82  TVRFT-WNIDA-HGYLKEISEELPKTIGNYAFKMIGMRLCD-VSDILHIDPNNHI-GDLL 137
           TVR   W +D    +   +  +    +     +       D        D       +  
Sbjct: 326 TVRVIPWEVDLKTQHFTYVGPQAETLLAYPIAQWYEENFWDNHLHPHDRDWAVRFCQEAA 385

Query: 138 KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG 197
            +      +  +   +G  +++   +    +   +      RGF +  +  +      L 
Sbjct: 386 NKGQNHELEYRMLAADGRVVWLRDVVN---VVEVDGTPVMLRGF-MFDITDLKRVEETLR 441

Query: 198 KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257
            R     +  + I    + +        +            ++      +   +D  +  
Sbjct: 442 LRERALAASSNGIVISDAKLPNYPVIYVNSAFEQITGYKATEIVGRNCRFLQGNDTTQPA 501

Query: 258 KYPLLTSEESSLPEQEDFH--TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
              L ++ ++    +        + + +  +     + N++ +   ++  +   S     
Sbjct: 502 IEELRSALKAGKNCKVILRNYRKDGSLFWNQLSVSPIYNDNGQLSHFIGIQTDISDRQQA 561

Query: 316 DEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
           +        T +       + +  G +   NP+   +  Y          G S  +    
Sbjct: 562 EASLRRQALTFENIYDGVIITNLQGQILDWNPAAERMFGYSKD----HICGQSISILHKV 617

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
             D      ++   + +   +       ++ +    +  T I     +   + +    + 
Sbjct: 618 EEDAALNSAIIAEITKQGRWSGEINF--VRQDGSQGICETTI-VALQDDQGQTVATISVN 674

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
            +  + +  +  +     +  + +  +     I + +G I+  +    + F  P ++++ 
Sbjct: 675 RDITERKHAELLLRRSEERFQAFMNHSPTPAWITDIDGTIVYLSETYRRTFQLPTQELIG 734

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR-IIIKKLPFSSC 553
                             +  +          +    S    +   +    I   P    
Sbjct: 735 TNIFDIYPPELIQTFRETIQIVARTHQVMETVESVPCSDGTVRDFLVYKFPISSKPDECL 794

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAE 579
                 DI+E KQ +  L  +++  +
Sbjct: 795 IGGIAIDITERKQAEAALRKSEERWQ 820



 Score =  135 bits (340), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 48/408 (11%), Positives = 113/408 (27%), Gaps = 28/408 (6%)

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS----- 241
                      +  + +   L E  +        K   F+   P     +   ++     
Sbjct: 303 IEKQTQVEIALRASENRLRELLETVRVIPWEVDLKTQHFTYVGPQAETLLAYPIAQWYEE 362

Query: 242 SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE-DFHTINLNQYTKKQYFGTLQNNSKESF 300
           +  + + H  D     ++    + +    E E      +      +     ++ +     
Sbjct: 363 NFWDNHLHPHDRDWAVRFCQEAANKGQNHELEYRMLAADGRVVWLRDVVNVVEVDGTPVM 422

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN----LFYANPSFLLLTKYKS 356
                    +     +E   L    +        +         + Y N +F  +T YK+
Sbjct: 423 -LRGFMFDITDLKRVEETLRLRERALAASSNGIVISDAKLPNYPVIYVNSAFEQITGYKA 481

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
            + +    G +        +   AI+ +               L   + +          
Sbjct: 482 TEIV----GRNCRFLQGNDTTQPAIEELRSALKAGKNCKV--ILRNYRKDGSLFWNQ-LS 534

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476
                N   +     GI+ +  D +  +  +  +        E   DG+ I N +G IL 
Sbjct: 535 VSPIYNDNGQLSHFIGIQTDISDRQQAEASLRRQ----ALTFENIYDGVIITNLQGQILD 590

Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
            N A  ++FGY  + I  +  ++  +    + +N  +  I  +  +           ++ 
Sbjct: 591 WNPAAERMFGYSKDHICGQSISILHKVEEDAALNSAI--IAEITKQGRWSGEINFVRQDG 648

Query: 537 KLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAEK 580
                   I  L               DI+E K  +  L  +++  + 
Sbjct: 649 SQGICETTIVALQDDQGQTVATISVNRDITERKHAELLLRRSEERFQA 696



 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 54/516 (10%), Positives = 150/516 (29%), Gaps = 45/516 (8%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGKTTLWPIE 153
           +  ++    +  G  A +++G     +       P    +   LK           +  +
Sbjct: 466 VIYVNSAFEQITGYKATEIVGRNCRFLQGNDTTQPAIEELRSALKAGKNCKVILRNYRKD 525

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
           G+       L+  PIY+ N + S F   GI           A  +R         E    
Sbjct: 526 GSLF--WNQLSVSPIYNDNGQLSHF--IGIQTDISDRQQAEASLRRQA----LTFENIYD 577

Query: 214 HSSVEKEKYDIFSQQSPPPH--LRMKNKVSSLTEYYAHKDDVLKTEKYPLLT--SEESSL 269
              +   +  I              K+ +   +    HK +        ++   +++   
Sbjct: 578 GVIITNLQGQILDWNPAAERMFGYSKDHICGQSISILHKVEEDAALNSAIIAEITKQGRW 637

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS----LSAYFDEGENLTPET 325
             + +F   + +Q   +     LQ++  ++   +S     +            E      
Sbjct: 638 SGEINFVRQDGSQGICETTIVALQDDQGQTVATISVNRDITERKHAELLLRRSEERFQAF 697

Query: 326 VDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
           ++  P P ++    G + Y + ++    +  + + I         +  P+L         
Sbjct: 698 MNHSPTPAWITDIDGTIVYLSETYRRTFQLPTQELIGTNIFD---IYPPELIQTFRETIQ 754

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
           ++ R+ +          ++  +           F   +  P+     GI  +  + +  +
Sbjct: 755 IVARTHQVMETVE----SVPCSDGTVRDFLVYKFPI-SSKPDECLIGGIAIDITERKQAE 809

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS-KLFGYPVEDILRKPFTVF--- 500
             +     +   ++E   D I     +  I++ N       +   +++   +P       
Sbjct: 810 AALRKSEERWQLVIEGNQDAIW----DWNIIT-NETFRSARWAELIKEQNYQPIADHADC 864

Query: 501 ---LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---- 553
              +  +    +     + LS  +   +         ++    + +              
Sbjct: 865 ISRIHPDDYERVMAVRQDCLSRKIPNYV-VEYRLRCNDDSYKWVLVHATGQWDERGNPVR 923

Query: 554 YSLTMHDISEWKQEKNKLSH--AKKIAEKESSHKSD 587
              ++ DI+E  + +  L     + +  ++ + K  
Sbjct: 924 MVGSIKDITERIEAQEALQRQLHRTLLLEKITQKIR 959



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/182 (10%), Positives = 52/182 (28%), Gaps = 8/182 (4%)

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVD-TRINKRKMEIEVMQLCSILEATSDGIA 466
                + +          +    N    + ++     +  +     +L  +LE       
Sbjct: 273 GAVTLLIYFAQATKLSNHQIGRINQELADRIEKQTQVEIALRASENRLRELLETVRVIPW 332

Query: 467 IIN-REGIILSTNRAVSKLFGYPVEDILRKPFT-VFLEQNTPSVMNHYLTEILSLDLRQT 524
            ++ +             L  YP+     + F    L  +       +  E  +      
Sbjct: 333 EVDLKTQHFTYVGPQAETLLAYPIAQWYEENFWDNHLHPHDRDWAVRFCQEAANKGQNH- 391

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT---MHDISEWKQEKNKLSHAKKIAEKE 581
            E        + +++ LR ++  +       +    M DI++ K+ +  L   ++     
Sbjct: 392 -ELEYRMLAADGRVVWLRDVVNVVEVDGTPVMLRGFMFDITDLKRVEETLRLRERALAAS 450

Query: 582 SS 583
           S+
Sbjct: 451 SN 452


>gi|254492527|ref|ZP_05105699.1| hypothetical protein MDMS009_2869 [Methylophaga thiooxidans DMS010]
 gi|224462419|gb|EEF78696.1| hypothetical protein MDMS009_2869 [Methylophaga thiooxydans DMS010]
          Length = 929

 Score =  322 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 91/388 (23%), Positives = 161/388 (41%), Gaps = 27/388 (6%)

Query: 440 TRINKRKMEIEVMQLC-------SILEATSDGIAIINREGIILSTNRAVSKLFGY-PVED 491
            +  +  +E    +L        ++L+A    +   N +      NR + +  G   V +
Sbjct: 137 RKKAEMALEQSRTKLAETNKMLSTVLDAIPVRVFWKNHDLEFQGVNRVLLEDAGMNDVSE 196

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
           I+ K        +           +L    R  L+       +    L  +     L   
Sbjct: 197 IIGKTDYQLPWADFADKYKKDDKAVLDSG-RSMLQIEEELVDRNGNRLWAKTNKVPLLND 255

Query: 552 S----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
                    T  DI++ K  + +L  AK+ AE+ +  KS FLA +SHE+RTPL  +IG  
Sbjct: 256 KNEVIGVLGTFEDITQAKIAEQELIVAKEQAEQANIAKSQFLANMSHELRTPLNGVIGTL 315

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
            ++         N R     N    S   +  ++ND+LD+SKIESGK+ L +    LDE 
Sbjct: 316 NLLAATSL----NARQSNLVNISKHSAESLFGLLNDVLDLSKIESGKLELEYHNEDLDEL 371

Query: 668 VSEAISLVQLYANEKRILIRT---SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724
           ++E    +   A EK + +       ++ + ++  D   ++QI  N++ NA+ FT  G  
Sbjct: 372 LAEVARGMAGRAEEKGLELLCPAHFMSSCVAKV--DRLRLRQILNNLIGNALKFTEKGS- 428

Query: 725 IIISTTHT----SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
           I +  T          +   + DTGVG++ ++     + F Q+  S      G+GLGL +
Sbjct: 429 ITVDMTVIKKTMPEATLRFSISDTGVGISEHDQALLFERFKQLDGSSTRPQAGSGLGLAI 488

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            + +V+   G+  + ST  +G+      
Sbjct: 489 CRQLVELMGGRIGVSSTLGQGSTFWFEI 516


>gi|229020690|ref|ZP_04177418.1| hypothetical protein bcere0030_51650 [Bacillus cereus AH1273]
 gi|229026905|ref|ZP_04183229.1| hypothetical protein bcere0029_51700 [Bacillus cereus AH1272]
 gi|228734408|gb|EEL85078.1| hypothetical protein bcere0029_51700 [Bacillus cereus AH1272]
 gi|228740605|gb|EEL90875.1| hypothetical protein bcere0030_51650 [Bacillus cereus AH1273]
          Length = 586

 Score =  322 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 84/376 (22%), Positives = 161/376 (42%), Gaps = 25/376 (6%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +  +   E E  +L S+L   +DG+   +R+G I+  N    K+     E  L +     
Sbjct: 231 QQARSSTESERRKLSSVLSHMTDGVIATDRKGDIILLNDPAEKMLNVSRETALDQSVLEV 290

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
           L       ++H   E  S+ L  +                  +I K+   ++     ++D
Sbjct: 291 LGIQEEFTLDHLYEEPDSVLLDFSTRNEPYILRAS-----FSVIQKETGKANGLIAVLYD 345

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           ++E ++ + +              + +F+A VSHE+RTPLT +  + E + +  +     
Sbjct: 346 VTEQERIEQE--------------RREFVANVSHELRTPLTTMRSYLEALTDGAWQDPNI 391

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
                +          ++ +VN LL +SK++S +  L  E V   +  +  I   +  + 
Sbjct: 392 APQ--FLTVTQEETERMIRLVNALLQLSKLDSTEHRLMKEWVDFTDFFNNVIDRFE-MSK 448

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV-IL 739
           E+ +  + SF+     I  D   + Q+  NI+SNA+ ++P GG +          E+  +
Sbjct: 449 EQNVSFKRSFSKRSRFIDMDTDKITQVLYNIISNALKYSPEGGTVT--YRLRDRGELLEI 506

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V D G+G+    ++K  + F ++  ++  +  GTGLGL +AK M++A+ G  +  S   
Sbjct: 507 SVSDQGMGIPKENVDKIFERFYRVDKARSRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEG 566

Query: 800 KGTLIEIIFPLYDTSH 815
           KGT I    P+     
Sbjct: 567 KGTTIYFTLPMATDEE 582


>gi|183222624|ref|YP_001840620.1| putative two-component sensor [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189912658|ref|YP_001964213.1| signal transduction histidine kinase [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167777334|gb|ABZ95635.1| Signal transduction histidine kinase [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167781046|gb|ABZ99344.1| Putative two-component sensor [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 536

 Score =  322 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 100/382 (26%), Positives = 170/382 (44%), Gaps = 28/382 (7%)

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
              L +I++ +  GI I+N    I+ TN    K      + +  K       +   +   
Sbjct: 6   EKHLLTIVQKSGIGILILNENFKIILTNHWFLKRSFLDEQHLDNKLIFDVFPELVGTRTL 65

Query: 511 HYLTEILSLDLRQTLEK------------ITLGSTKEEKLLSLRIIIKKLPFS-SCYSLT 557
             + + L       L                    KE     L +I   +    + + + 
Sbjct: 66  KSIEQCLEFSQYSILTHTLNPFPFPLFDNEQKIEKKERIYQYLHVIPISIDDEQNRFCMI 125

Query: 558 -MHDISEWKQEKNKLSHA-------KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
            + D+S+    +  L          +  A+K S  K+DFLA +SHEIRTPL AI+G ++ 
Sbjct: 126 QITDVSQQVTREKLLREQMVVAKEREVEAKKASQAKTDFLASMSHEIRTPLNAILGMADT 185

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           +             +EY   +  SG  + +I+ND+LD+S+IESGK+ +     S+ + + 
Sbjct: 186 LTETNLTN----EQMEYLTVLRNSGKALYNIINDILDLSRIESGKLEIEHIEFSIRDLLK 241

Query: 670 EAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
           E ISL  + A  K I I  S +++I   I  D   ++QI +N++ NA+ FT  G +I + 
Sbjct: 242 ETISLFLMKAKSKGIQISYSVSDDIAEQIKGDSTRIQQILINLIGNAMKFTEIG-KIYVD 300

Query: 729 TTH-TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
            +     + + L V DTG+G+ N +L    + F Q+ +S   R  GTGLGL + K ++  
Sbjct: 301 ASLSQDQKSLCLIVEDTGIGIPNEKLNSIFESFTQVDSSTTRRYGGTGLGLTITKKLILM 360

Query: 788 NMGKFYIFSTPAKGTLIEIIFP 809
             G+  + S   KG+   +  P
Sbjct: 361 MNGEISVQSQLGKGSKFVLNIP 382


>gi|227902982|ref|ZP_04020787.1| histidine kinase [Lactobacillus acidophilus ATCC 4796]
 gi|227869225|gb|EEJ76646.1| histidine kinase [Lactobacillus acidophilus ATCC 4796]
          Length = 618

 Score =  322 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 86/395 (21%), Positives = 170/395 (43%), Gaps = 31/395 (7%)

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
           ++  +           ++    +   + E  +L S+L   SDG+   +R G +   N   
Sbjct: 235 DELGQLGKALNTLSVRIERSQEES--DSERRRLDSVLSHMSDGVLATDRHGNVSVVNHMA 292

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
                   ED++ KP    L     S       +++S      +        +     S 
Sbjct: 293 LTFLNAKEEDVINKPIAEVLGLKDTSS-----QDLISSQKEIVITLDEGTRDEMILHASF 347

Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
            +I +   F S     +HD++E ++ +              + +  F++ VSHE+RTPLT
Sbjct: 348 SLIKRVTGFVSGSVCVLHDVTEQQKNE--------------NSQRQFVSNVSHELRTPLT 393

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           ++  + E +    +         ++     +    ++ ++NDLL +S+++ G   +  E 
Sbjct: 394 SLQAYIEALNEGAW--KDPEIAPKFLEVTQQETGRMIRMINDLLSLSRMDRGVSKMDLEF 451

Query: 662 VSLDEAVSEAISLV-------QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714
           V+L++ V+  ++         +   ++K+  I+    N    +  D   + Q+  NI++N
Sbjct: 452 VNLNDFVNHILNRFDMIVKTDKNKDHKKKYTIKRELGNQALWVEIDTDKMMQVIDNIMNN 511

Query: 715 AIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           AI ++P GG I +  T   N  VIL + D G+G+   +L K    F ++  ++     GT
Sbjct: 512 AIKYSPDGGVITVRLTQNQN-HVILSISDQGLGIPRKDLAKIFDRFYRVDKARSRAQGGT 570

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GLGL +AK +V+A+ G+ +  S+  KG+   I  P
Sbjct: 571 GLGLAIAKEIVEAHHGRIWADSSEGKGSTFYISLP 605


>gi|116696021|ref|YP_841597.1| signal transduction histidine kinase [Ralstonia eutropha H16]
 gi|113530520|emb|CAJ96867.1| signal transduction histidine kinase containing a receiver domain
           (hybrid) [Ralstonia eutropha H16]
          Length = 1106

 Score =  322 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 104/644 (16%), Positives = 225/644 (34%), Gaps = 31/644 (4%)

Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD 252
           P A  +    +   L ++      V   +Y     Q+        +++  +         
Sbjct: 121 PPASARAPGARLKSLADVMTFTFRVNNLQYRDV--QNAYLVDLQADQLYVIPRRLDPARA 178

Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
           +++ +        ++    + D     L  +  +        +       ++      + 
Sbjct: 179 LMQRDDVRQTFLRDTLARLRNDALVARLRAHPGQAVVLPPALDWVSGMRTVTFATLVQVG 238

Query: 313 AYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                   +        P    +   G+      + + L+              ++L  A
Sbjct: 239 GEPAAVLAMEFPLSPMLPDGQTI--DGDFVLVTDAGMALSADGMPAGTLGQSVTASL-AA 295

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN-------RENSLAMTFIPFEKANQFP 425
           P          ++        +    +     W         +                 
Sbjct: 296 PGTRPGRVSSALVRQGLLDYVVVLEYQFDAWGWRTVGVIALGQVWHQFRQNALWMLGLTG 355

Query: 426 ENMPQNGIEPEDVDTRINK------RKMEIEVMQLCSILEATSDGIAIINREGI-ILSTN 478
                       +D RI +       +++        ++E    G+ I+ R    +L  N
Sbjct: 356 SLSMLILAWIWLIDRRIMRPAQRQSLRLQESDALGRFVIEVAGVGLMIVERSTRQVLLAN 415

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
            A   +     +           +     + +   T      ++   +   +G   + + 
Sbjct: 416 AAAHSIT----DQATPAGLAQLQDACDARLTSEGTTTEGMPRVQPCFDVDLVGRNGQTRY 471

Query: 539 LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
           L +R +       +     ++D+++ ++ + +L  A + A+  +  KS FLA +SHEIRT
Sbjct: 472 LEVRQVEITYEGRAAVLRALNDVTDARRSEARLREAIRAADAANHAKSSFLATMSHEIRT 531

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
           PL  ++G  E++   R     + R  +    +  +   ++ I+ND+LD SKIE+G+M+L 
Sbjct: 532 PLNGMLGSIELLGLTRL----DSRQRDQLAVMQHASQSLIYIINDVLDFSKIEAGQMSLQ 587

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIH 717
             P  ++E V +        A  K++ +      ++   ++AD+  ++QI  N++SNA+ 
Sbjct: 588 LRPCRVEEIVEDVTRRFAAEAARKQLRLLCVNDPSLVEPVMADVVKLEQILNNLVSNAVK 647

Query: 718 FTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
           FT  G ++I++        V +RV DTG+G+   +  +  +PF Q          GTGLG
Sbjct: 648 FTEQG-KVIVTAMRKPGGGVEIRVIDTGIGIAARDQRRLFEPFVQAEQPDTRHYGGTGLG 706

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD--TSHPHDC 819
           L + + +V    G+  + S P  G+   +  PL       P D 
Sbjct: 707 LSICRRLVGLMSGEIRLVSEPGLGSCFTVSLPLASAGAEAPADA 750


>gi|117926280|ref|YP_866897.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117610036|gb|ABK45491.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 968

 Score =  322 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 123/745 (16%), Positives = 254/745 (34%), Gaps = 64/745 (8%)

Query: 109 YAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPI-EGTNLYVPIDLAALP 167
              ++IG    D + I   +    I  +  R +         PI + T  ++ +      
Sbjct: 99  SDAQLIGRHFKDEAAIKSTNTREPIWQIYNRFDGKRYYDVALPIFDQTKQHIGVIRLGFN 158

Query: 168 IYSRNREFSGFRGFGIVHV-NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFS 226
               +          ++++          L   L +      EI    +    E +    
Sbjct: 159 SKEVDDRVWHEITLIVINMFITFGLIALLLNFVLVRLIIKPVEILSQQARAISEGH---- 214

Query: 227 QQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKK 286
                P  +  ++V  L+         L  +   L   +     +               
Sbjct: 215 -FETGPPTQRSDEVGQLSTALDRMSATLHQQFQDLTQYQAELELKVTRRTH---ELAAAN 270

Query: 287 QYFGTLQNNSKESFEYLSHRNHP--SLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFY 343
                  ++ +++       N           E + L    +    +  F +   G + +
Sbjct: 271 HLLLERNDDLEQAITTQRRLNDQLHQNKEALRESKTLLVSILQSLSVGVFGLDLTGKIQF 330

Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403
            NP+   +        +  +G       +    D     P  +  +             +
Sbjct: 331 INPAAANMLGGVIESMLGQSG------LSLWYHDGTGKNPNPIGVTLTNHQPQQGEGRFV 384

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI-------------E 450
                              +  +         +    R  +R                 +
Sbjct: 385 HMRGHTLQVGYT--VMPILEQGQVTGVVVTFNDITANRRTERLTRTIIQGTSKVTGEAFQ 442

Query: 451 VMQLCSILEATSDGIAII-----NREGII----LSTNRAVSKLFGY-----PVEDILRKP 496
              + +I E+       +     +    I    +  N      F Y     P  +++ K 
Sbjct: 443 RELVRNISESLEMRFVFVGRFHEDPMPRIETTSVWANGRQGAPFNYLLADTPCAEVIGKE 502

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF---SSC 553
            +V+ E       N  L  +  L +   +      S  +   + + + ++ L     +  
Sbjct: 503 TSVYAEHVQTHFPNDPL--LAELKVESYMGTPLFRSDGKPLGILVVMDVQPLTDIELARS 560

Query: 554 YSLTMH----DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                        E ++ +  L  AK+ AE  S  KS+FLA +SHEIRTP+ AI+G +E+
Sbjct: 561 ILGIFSGRAAMELEREETELALRVAKERAEAASQAKSEFLAMMSHEIRTPMNAILGITEL 620

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           ++ Q          +E+     ++G  +L ++ND+L++S++E+G+  L   P  L E + 
Sbjct: 621 LQEQP----SKKEQLEFLTVQAKAGQALLTLINDILELSRLEAGREQLQTAPFDLYELLR 676

Query: 670 EAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
              +L++  A  K + +    A  + P  + D R ++Q+ +N++ N I FT  G  I IS
Sbjct: 677 SVSTLLEPSAKHKGLSVHLEIAEGLSPNWIGDERRLRQVLINLVGNGIKFTNRGS-IWIS 735

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
               +N  + +RV+D+G G+     +K  + F Q+ ++   +  GTGLGL + K ++D  
Sbjct: 736 AQPMANG-LEIRVKDSGAGINPRHHDKIFERFHQVDSTATRKHGGTGLGLAITKKLMDLM 794

Query: 789 MGKFYIFSTPAKGTLIEIIFPLYDT 813
            G+  + S P +G+   +  PL + 
Sbjct: 795 GGEIRMESQPDQGSCFTLALPLSEA 819



 Score = 41.9 bits (97), Expect = 0.42,   Method: Composition-based stats.
 Identities = 37/330 (11%), Positives = 91/330 (27%), Gaps = 29/330 (8%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWY 144
            + +D  G ++ I+      +G     M+G     +          N IG  L       
Sbjct: 319 VFGLDLTGKIQFINPAAANMLGGVIESMLGQSGLSLWYHDGTGKNPNPIGVTLTNHQPQQ 378

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
           G+     + G  L V   +  +PI     + +G       +    +     L + + +  
Sbjct: 379 GEGRFVHMRGHTLQVGYTV--MPIL-EQGQVTGV--VVTFNDITANRRTERLTRTIIQGT 433

Query: 205 SHL------HEIKKGHSSVEKEKYDIFSQ--QSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256
           S +       E+ +  S   + ++    +  + P P +   +  ++  +       +  T
Sbjct: 434 SKVTGEAFQRELVRNISESLEMRFVFVGRFHEDPMPRIETTSVWANGRQGAPFNYLLADT 493

Query: 257 EKYPLLTSE--------ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
               ++  E        ++  P       + +  Y     F +                 
Sbjct: 494 PCAEVIGKETSVYAEHVQTHFPNDPLLAELKVESYMGTPLFRSDGKPLGILVVMDVQPLT 553

Query: 309 PSLSAYFDEGENLTPETVDK------CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEI 362
               A    G       ++         +            A   FL +  ++    +  
Sbjct: 554 DIELARSILGIFSGRAAMELEREETELALRVAKERAEAASQAKSEFLAMMSHEIRTPMNA 613

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
             G++ LL   + S    ++ + +      
Sbjct: 614 ILGITELLQE-QPSKKEQLEFLTVQAKAGQ 642


>gi|218249059|ref|YP_002374430.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp.
            PCC 8801]
 gi|218169537|gb|ACK68274.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp.
            PCC 8801]
          Length = 1166

 Score =  322 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 103/667 (15%), Positives = 210/667 (31%), Gaps = 58/667 (8%)

Query: 185  HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL---RMKNKVS 241
               R         +  + K   L +      SV  E+  +         +     +   +
Sbjct: 510  RNERSRQQAEKEREVSENKLKALLKYSSDIVSVFDEQGQLIYTSPAVEKIYGFSPEELQN 569

Query: 242  SLTEYYAHKDDVLKTEKY--PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
              T    H DD  +       LL   ++++     + T N      +        N    
Sbjct: 570  KNTFELIHPDDRSEVRNAFCQLLEDPKNTIRVHYRYQTKNQRFIWIETVASNQLQNPNIQ 629

Query: 300  FEYLSHRN---HPSLSAYFDEGENLTPETVDKCPIPFFVYS-------HGNLFYANPSFL 349
               ++ R+              E    +  +     F++              Y +P++ 
Sbjct: 630  GIVVNSRDISHRKESEEALRVSEERFRQLAENIREVFWMIDVSTVNPTEQRTLYVSPAYQ 689

Query: 350  LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS--DRTCIAASARLHTIQWNR 407
             +  +K  +  E             +   +      +     D+  I      + I    
Sbjct: 690  QVWGHKPEELYENP--------RQWIQAVHPDDFERISHEFFDKLLITGFDHEYRIIRPD 741

Query: 408  ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME------------------I 449
                 +    F   NQ  E     G+  +    +  + ++                    
Sbjct: 742  GTIRWIRDRGFPIKNQVGEFCRVTGLAEDITKQKQTEEEIRGLNAALAEQNRQLEQRVAQ 801

Query: 450  EVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYP-VEDILRKPFTVFLEQNTPS 507
               +L  +     D + ++ RE   +   N+  ++  G+    ++  K           +
Sbjct: 802  RTAELEMLFNTLPDFVFVVERETMKLSFCNQMFAQGIGFTNRSEVEGKTIFECFPTEMAN 861

Query: 508  VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY--SLTMHDISEWK 565
                   ++ +      +E+       + +      +  + P    Y    T  D++E  
Sbjct: 862  YFAQQNEQVFNSGEILHVEEKVCLPNGD-RYFDTYKVPLRTPQGEIYALLGTGRDMTELV 920

Query: 566  QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF--GPLGNPRY 623
              K  L       E  +     F   VSH++R PL  I GF   +K Q      L +P+ 
Sbjct: 921  NTKKVLMQRTTQLELANQELDSFCYSVSHDLRAPLRHIHGFVNALKQQLMINNTLEDPKV 980

Query: 624  IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            + Y   I+ S   +  +++ LL +S++  G+  L    V L+  V  AI+L+      K 
Sbjct: 981  LHYLEVIENSSQKMAHLIDGLLTLSRV--GRRELVLHTVDLNAVVKTAINLLSPL-ENKT 1037

Query: 684  ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
              I+      +P +  D   ++Q+  N+L NA+ F+     I I      +    + + D
Sbjct: 1038 HTIKFEV-GKLPTVQGDNALLQQVFTNLLDNALKFSRDRNPISIKINTLEDG--TIFISD 1094

Query: 744  TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
             GVG      ++    F ++ +      EGTG+GL + + ++  + G  +  S   KG  
Sbjct: 1095 NGVGFDMEYADQLFGAFQRLHSQAI--FEGTGIGLSIVQRIIHRHGGHIWAESQVDKGAT 1152

Query: 804  IEIIFPL 810
                 PL
Sbjct: 1153 FYFTLPL 1159



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/293 (12%), Positives = 82/293 (27%), Gaps = 19/293 (6%)

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364
                      +E        ++  P  FF  +  +             Y S +      
Sbjct: 62  ITLQQDQKFLLEEKREELRTILEILPDLFFRMNSDSTILDYRGESKSELYVSPELFLGKP 121

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
            +  L   P+         +       T +    +L T   N E       +PF      
Sbjct: 122 MIEIL---PEPVAQAWRDAIAQVLGSNTLVTLEYQLST--SNAEQYYEARLVPFAHQ--- 173

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE----GIILSTNRA 480
                   I       +  +  ++     L +I+      + + + +    G +L  N+A
Sbjct: 174 ----QIIAIVRNISQQKQTEINLKKSQDFLQTIINYLPVALFVKDGKPEKFGQLLLVNKA 229

Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
             ++ G     ++ K        +  +       E  +  + + + +  + S    K + 
Sbjct: 230 CEEMMGLVSSQVVGKTGHDLFPADQANFYEQKDREAFANGVPEDIPEEPIDSYNAGKKIL 289

Query: 541 LRIII---KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
             I +    +            DI+  K+ +  L  +  I    S  +S F+A
Sbjct: 290 HTIKVPLYDQNNDPEYLVCISEDITRQKKAEIDLEKSHNILRTISLAQSQFIA 342



 Score = 65.8 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/404 (8%), Positives = 88/404 (21%), Gaps = 51/404 (12%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN-HIGDLLKRQNTWYGKTT 148
           D  G L   S  + K  G    ++      ++               LL+  +       
Sbjct: 544 DEQGQLIYTSPAVEKIYGFSPEELQNKNTFELIHPDDRSEVRNAFCQLLE--DPKNTIRV 601

Query: 149 LWPIEGTNLY-VPIDLAALPIYSRNREFSGFRGFGI-VHVNRVDNDPRALGKRLDKKFSH 206
            +  +  N   + I+  A        +    +G  +         +     +  +++F  
Sbjct: 602 HYRYQTKNQRFIWIETVASNQL----QNPNIQGIVVNSRDISHRKESEEALRVSEERFRQ 657

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
           L E  +    +        ++Q          +V        +++     +       E 
Sbjct: 658 LAENIREVFWMIDVSTVNPTEQRTLYVSPAYQQVWGHKPEELYENPRQWIQAVHPDDFER 717

Query: 267 -----------SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS----- 310
                      +    +      +      +     ++N   E           +     
Sbjct: 718 ISHEFFDKLLITGFDHEYRIIRPDGTIRWIRDRGFPIKNQVGEFCRVTGLAEDITKQKQT 777

Query: 311 -----------------LSAYFDEGENLTPETVDKCPIPFFVYSHGN--LFYANPSFLLL 351
                            L     +         +  P   FV       L + N  F   
Sbjct: 778 EEEIRGLNAALAEQNRQLEQRVAQRTAELEMLFNTLPDFVFVVERETMKLSFCNQMFAQG 837

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411
             + +  ++E                    + V         +    ++     N +   
Sbjct: 838 IGFTNRSEVEGKTIFECFPTEMANYFAQQNEQVFNS---GEILHVEEKVC--LPNGDRYF 892

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
               +P        E     G   +  +    K+ +     QL 
Sbjct: 893 DTYKVPLRTP--QGEIYALLGTGRDMTELVNTKKVLMQRTTQLE 934


>gi|262192282|ref|ZP_06050438.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae CT
           5369-93]
 gi|262031832|gb|EEY50414.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae CT
           5369-93]
          Length = 785

 Score =  322 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 87/387 (22%), Positives = 165/387 (42%), Gaps = 19/387 (4%)

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
            +E E       + ++      L S ++A+ D I   N +G     NRA+ +L G    +
Sbjct: 135 DLENEVYQREKTQVELAERTALLRSFIDASPDLIYYRNAKGEFSGCNRAMEELTGKRESE 194

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
           ++         +     +     ++ + +   T E+        +    LR +       
Sbjct: 195 LVGLTPWDVYRKEIAQSIVETDQQVFNNNTAITYEQWLEYPDGRKSFFELRKVPFYNKDG 254

Query: 552 S--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                     DI+E K+ +  L       EK S  K+ F++ +SHE+RTPL  I+G S +
Sbjct: 255 RHLGLVGFGRDITERKRHEESL-------EKASRDKTTFISTISHELRTPLNGIVGLSRM 307

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           + +            ++   I+ S   + +I ND++D+ K +  K+ L    ++ +E V+
Sbjct: 308 LLDTPLSS----EQRKHLQTINVSAVTLGNIFNDIIDMDKFDRRKLELFPAALNFEEFVA 363

Query: 670 EAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI-II 727
           E   L  L A +K +        ++P  +  D   ++Q+  N+LSNA+ FT  GG +  +
Sbjct: 364 EIEVLAALMAEQKGLRFDLERLTDLPSLVEVDSTRLRQVLWNLLSNAMKFTKEGGVVMTV 423

Query: 728 STTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGEGTGLGLPLAKAMV 785
           S    +   E+ + V DTG+G+   E EK    + Q+ + +      GTG+GL +++ ++
Sbjct: 424 SAECDAQHAEITIEVEDTGIGIPEAEQEKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLI 483

Query: 786 DANMGKFYIFSTPAKGTLIEIIF--PL 810
               G   + S    G+   +    PL
Sbjct: 484 KLMGGDISVNSEEGFGSTFTVTIRVPL 510



 Score = 45.4 bits (106), Expect = 0.043,   Method: Composition-based stats.
 Identities = 33/240 (13%), Positives = 60/240 (25%), Gaps = 18/240 (7%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           +A G     +  + +  G    +++G+   DV               +   NT       
Sbjct: 172 NAKGEFSGCNRAMEELTGKRESELVGLTPWDVYRKEIAQSIVETDQQVFNNNTAITYE-Q 230

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
           W           +L  +P Y+++    G  GFG               ++  +  +    
Sbjct: 231 WLEYPDGRKSFFELRKVPFYNKDGRHLGLVGFG--RDITERKRHEESLEKASRDKTTFIS 288

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY--------------AHKDDVLK 255
                           S+      L  + +    T                   K D  K
Sbjct: 289 TISHELRTPLNGIVGLSRMLLDTPLSSEQRKHLQTINVSAVTLGNIFNDIIDMDKFDRRK 348

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
            E +P   + E  + E E    +   Q   +     L +      E  S R    L    
Sbjct: 349 LELFPAALNFEEFVAEIEVLAALMAEQKGLRFDLERLTDL-PSLVEVDSTRLRQVLWNLL 407


>gi|163846054|ref|YP_001634098.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222523787|ref|YP_002568257.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
 gi|163667343|gb|ABY33709.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222447666|gb|ACM51932.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
          Length = 878

 Score =  322 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 131/740 (17%), Positives = 269/740 (36%), Gaps = 77/740 (10%)

Query: 127 IDPNNHIGDLLKR--QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIV 184
           +D +  I  ++    + T      LW ++     + +  +     S +    G+      
Sbjct: 165 LDRDTLIEIVIDSLHRLTEAHHAALWLVD-DKQRIRVVAS---RGSDDGPPVGYI----- 215

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHE-IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL 243
            +   +   +A   +     +   + +++   +         +            ++ + 
Sbjct: 216 -LPDANPTVQAAFHKGVFWPALPADNMQEWMIAGCSVLIIPMTGGERLIGAVTLQELHNP 274

Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303
            +    +D          +  + + L         +L Q   +     L+          
Sbjct: 275 LDLRFMQDLAQSIASQAAIALQNAELYHTIRTLNADLEQRVIE-RTRELEEEKDRLATLH 333

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIP----FFVYSHGNLFYANPSFLLLTKYKSVDD 359
           +     + +   D+  N +   + +          +    N        +L TK    + 
Sbjct: 334 AIAAQVNQTLDLDQILNNSLTMLARIVQAEHASILLTEEDNPSLLVTRAILGTKVSPDNT 393

Query: 360 IE-----IAGGLSTLLDAPKLSDNNAIKPVML------YRSDRTCIAA------------ 396
           +         G +       L  + A     +       + + + IA             
Sbjct: 394 VRFAIGQGIAGWAAQHGQTVLVPDVAEDERWVTIPGSSRKREGSMIAVPLFVQGEVIGVM 453

Query: 397 -SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
             +   T  ++  +   +       A           I  E         + + E  Q+ 
Sbjct: 454 TLSHSQTHFFHEGHVRLLNACAGAIAIGINNANLFRMISTEAERRYELLDRQQKETSQIA 513

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY-LT 514
           +IL++  DG+ + +  G ++S N A S++   P+E++L       +++   S      L 
Sbjct: 514 AILQSLLDGVIVCDLYGGVISINPAASRILHRPLEELLLWNLRDVIQRYLGSHAAELPLD 573

Query: 515 EILSLDLRQTLEKITLGSTK--EEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNK 570
           ++L   L    E  T  +T     K ++  +              L + DI+        
Sbjct: 574 DLLRRPLSVNGEARTFTTTAIVGGKTVNFSLSPVLKENDELLGALLVLRDITR------- 626

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
                    +    K++F+  +SHE+RTP+TAI GF++++     G L N    E+ N I
Sbjct: 627 -------EVEADRMKNEFIGTMSHELRTPMTAIKGFTQLLAMGGLGQL-NDTQREFVNTI 678

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
             +   +++++ND+L+I+KIESG ++L +  + L EA+S  I+ +Q    + R  +  S 
Sbjct: 679 YSNTERMINLINDVLEITKIESGSIDLEWRSLHLAEALSGVIAELQPQITQHRHQLTISI 738

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII---------------STTHTSNE 735
              +P I AD   + QI  ++L NA+ +TP+GG I I               ST   +  
Sbjct: 739 PPGLPLIRADAMRLHQILYHVLLNAVKYTPAGGSITIAAREVMNIDIPEPIRSTLSDNRR 798

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            ++L + DTGVG+   +L +    F +  N  ++   GTGLGL + K +V+   G+ ++ 
Sbjct: 799 YLLLSISDTGVGIRPEDLPRIFDRFFRGENLLKVEAGGTGLGLSIVKPLVELLGGRIWVE 858

Query: 796 STPAKGTLIEIIFPLYDTSH 815
           ST   G+   II P+     
Sbjct: 859 STVGVGSTFSIIMPIAGEHA 878


>gi|327251301|gb|EGE62990.1| aerobic respiration control sensor protein arcB [Escherichia coli
           STEC_7v]
          Length = 778

 Score =  322 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 86/438 (19%), Positives = 180/438 (41%), Gaps = 21/438 (4%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L +           L  +Q     +     I   +  +         ++ E
Sbjct: 81  EESRQRLSRLVQKLEEMRERDLSL-NVQLKDNIAQLNQEIAVREKAEAELQETFGQLKIE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             +    + ++E +   L S L+A+ D +   N +      NRA+  L G   + ++   
Sbjct: 140 IKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCY 554
                     + +     ++   ++  T E+        +    +R +    ++      
Sbjct: 200 PADVYSPEAAAKVIETDEKVFRYNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGL 259

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+        +   E+ S  K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 260 MGFGRDITERKR-------YQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE 312

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     +Y   I  S   + +I ND++D+ K+E  K+ L  +PV     +++  +L
Sbjct: 313 LTA----EQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENL 368

Query: 675 VQLYANEKRILIRTSFANNIP---RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
             L A +K   +R +    +P   +++ D   ++QI  N++SNA+ FT  G Q+ +   +
Sbjct: 369 SALQAQQKG--LRFNLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQG-QVTVRVRY 425

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMG 790
              + +   V D+G+G+   EL+K    + Q+ +S   +   GTG+GL +++ +     G
Sbjct: 426 DEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGG 485

Query: 791 KFYIFSTPAKGTLIEIIF 808
              + S   KG+   +  
Sbjct: 486 DITVTSEQGKGSTFTLTI 503


>gi|229521204|ref|ZP_04410624.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae TM
           11079-80]
 gi|229341736|gb|EEO06738.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae TM
           11079-80]
          Length = 785

 Score =  322 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 87/387 (22%), Positives = 165/387 (42%), Gaps = 19/387 (4%)

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
            +E E       + ++      L S ++A+ D I   N +G     NRA+ +L G    +
Sbjct: 135 DLENEVYQREKTQVELAERTALLRSFIDASPDLIYYRNAKGEFSGCNRAMEELTGKRESE 194

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
           ++         +     +     ++ + +   T E+        +    LR +       
Sbjct: 195 LVGLTPWDVYRKEIAQSIVETDQQVFNNNTAITYEQWLEYPDGRKSFFELRKVPFYNKDG 254

Query: 552 S--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                     DI+E K+ +  L       EK S  K+ F++ +SHE+RTPL  I+G S +
Sbjct: 255 HHLGLVGFGRDITERKRHEESL-------EKASRDKTTFISTISHELRTPLNGIVGLSRM 307

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           + +            ++   I+ S   + +I ND++D+ K +  K+ L    ++ +E V+
Sbjct: 308 LLDTPLSS----EQRKHLQTINVSAVTLGNIFNDIIDMDKFDRRKLELFPAALNFEEFVA 363

Query: 670 EAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI-II 727
           E   L  L A +K +        ++P  +  D   ++Q+  N+LSNA+ FT  GG +  +
Sbjct: 364 EIEVLAALMAEQKGLRFDLERLTDLPSLVEVDSTRLRQVLWNLLSNAMKFTKEGGVVMTV 423

Query: 728 STTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGEGTGLGLPLAKAMV 785
           S    +   E+ + V DTG+G+   E EK    + Q+ + +      GTG+GL +++ ++
Sbjct: 424 SAECDAQHAEITIEVEDTGIGIPEAEQEKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLI 483

Query: 786 DANMGKFYIFSTPAKGTLIEIIF--PL 810
               G   + S    G+   +    PL
Sbjct: 484 KLMGGDISVNSEEGFGSTFTVTIRVPL 510



 Score = 45.0 bits (105), Expect = 0.053,   Method: Composition-based stats.
 Identities = 33/240 (13%), Positives = 60/240 (25%), Gaps = 18/240 (7%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           +A G     +  + +  G    +++G+   DV               +   NT       
Sbjct: 172 NAKGEFSGCNRAMEELTGKRESELVGLTPWDVYRKEIAQSIVETDQQVFNNNTAITYE-Q 230

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
           W           +L  +P Y+++    G  GFG               ++  +  +    
Sbjct: 231 WLEYPDGRKSFFELRKVPFYNKDGHHLGLVGFG--RDITERKRHEESLEKASRDKTTFIS 288

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY--------------AHKDDVLK 255
                           S+      L  + +    T                   K D  K
Sbjct: 289 TISHELRTPLNGIVGLSRMLLDTPLSSEQRKHLQTINVSAVTLGNIFNDIIDMDKFDRRK 348

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
            E +P   + E  + E E    +   Q   +     L +      E  S R    L    
Sbjct: 349 LELFPAALNFEEFVAEIEVLAALMAEQKGLRFDLERLTDL-PSLVEVDSTRLRQVLWNLL 407


>gi|217076268|ref|YP_002333984.1| alkaline phosphatase synthesis sensor protein PhoR [Thermosipho
           africanus TCF52B]
 gi|217036121|gb|ACJ74643.1| alkaline phosphatase synthesis sensor protein PhoR [Thermosipho
           africanus TCF52B]
          Length = 424

 Score =  322 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 84/387 (21%), Positives = 168/387 (43%), Gaps = 37/387 (9%)

Query: 446 KMEIEVMQLC-------SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
           K+E E   L        +IL    D I I  ++G I   N    K+       I  +   
Sbjct: 63  KLEEENYDLELSLKNHLTILNNIVDPIIITKKDGTITFANNEARKI---TRPGIEERKVY 119

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP-FSSCYSLT 557
              E    + M          +   T  +I +    E+K   ++I+   L   +  + + 
Sbjct: 120 EVFEDYYVNQMFDE----TINNKSLTSGEINIFVNGEKKYYEVKIVPVTLEQNNERFIIV 175

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
           +HD+++ +  +N               + +F++ VSHE+RTPLT+I G++E +       
Sbjct: 176 LHDVTQERVLENV--------------RKEFISNVSHELRTPLTSIHGYAEALLEDDL-- 219

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
                  ++ + I+     +  ++NDLLD+ K+ESG     FE ++  E +    ++++ 
Sbjct: 220 EDKELIRKFLSIIESEAARMTRLINDLLDLEKLESGNTQFVFEKINFTEVLEHVRNIIEP 279

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT---PSGGQ-IIISTTHTS 733
            A + ++ +   + + +  ++ D   + Q+ LN++ NAI +T     G + + +      
Sbjct: 280 LAKDYQVEVEFVYPDEL-YLVGDKDRLTQMTLNLVDNAIKYTSLKEKGKKKVTVE-AWKE 337

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
           N  + L V+DTGVG+     +K  + F ++  ++  +  GTGLGL + K +V+ + G   
Sbjct: 338 NNSIKLVVKDTGVGIPEKAQKKLFERFYRVDKARSRKMGGTGLGLSIVKTIVEKHNGVIE 397

Query: 794 IFSTPAKGTLIEIIFPLYDTSHPHDCI 820
             S    GT   +  P+      ++ +
Sbjct: 398 FTSKEGVGTKFVVTLPINREEDNNETV 424


>gi|262404692|ref|ZP_06081247.1| aerobic respiration control sensor protein ArcB [Vibrio sp. RC586]
 gi|262349724|gb|EEY98862.1| aerobic respiration control sensor protein ArcB [Vibrio sp. RC586]
          Length = 785

 Score =  322 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 87/400 (21%), Positives = 166/400 (41%), Gaps = 19/400 (4%)

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
               +         +E E       + ++      L S ++A+ D I   N +G     N
Sbjct: 122 RIKAEEAREEAMLDLENEVYQREKTQVELAERTALLRSFIDASPDLIYYRNAKGEFSGCN 181

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
           RA+ +L G    +++         +     +     ++ + +   T E+        +  
Sbjct: 182 RAMEELTGKRESELVGLTPWDVYRKEIAQSIVETDQQVFNNNSSITYEQWLEYPDGRKSF 241

Query: 539 LSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
             LR +                 DI+E K+ +  L       EK S  K+ F++ +SHE+
Sbjct: 242 FELRKVPFYSKDGRHLGLVGFGRDITERKRHEESL-------EKASRDKTTFISTISHEL 294

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTPL  I+G S ++ +            ++   I+ S   + +I ND++D+ K +  K+ 
Sbjct: 295 RTPLNGIVGLSRMLLDTPLSG----EQRKHLQTINVSAVTLGNIFNDIIDMDKFDRRKLE 350

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNA 715
           L    ++ +E V+E   L  L A +K +        ++P  +  D   ++Q+  N+LSNA
Sbjct: 351 LFPAALNFEEFVAELEVLAALMAEQKGLRFDLERLTDLPSLVEVDATRLRQVLWNLLSNA 410

Query: 716 IHFTPSGGQI-IISTTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGE 772
           + FT  GG +  +S        ++ + V DTG+G+   ELEK    + Q+ + +      
Sbjct: 411 MKFTKEGGVVMTVSAECDEQYADITIEVEDTGIGIPETELEKIFAMYYQVKSGKDNLHAV 470

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF--PL 810
           GTG+GL +++ ++    G   + S    G+   +    PL
Sbjct: 471 GTGIGLAVSRQLIKLMGGDISVNSEEGFGSTFTVTIRVPL 510



 Score = 47.3 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 39/316 (12%), Positives = 83/316 (26%), Gaps = 25/316 (7%)

Query: 19  KGNTQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESV----SNTNYLDSENTF 74
           +   Q+L++K   N  +  +  +E    +   +    D   E      +     +     
Sbjct: 98  RSRDQELNQKLQQNIVKLNQEIEERIKAEEAREEAMLDLENEVYQREKTQVELAERTALL 157

Query: 75  VFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHI 133
                       +  +A G     +  + +  G    +++G+   DV             
Sbjct: 158 RSFIDASPDLIYYR-NAKGEFSGCNRAMEELTGKRESELVGLTPWDVYRKEIAQSIVETD 216

Query: 134 GDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193
             +    ++   +  L   +G   +   +L  +P YS++    G  GFG           
Sbjct: 217 QQVFNNNSSITYEQWLEYPDGRKSFF--ELRKVPFYSKDGRHLGLVGFG--RDITERKRH 272

Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY------ 247
               ++  +  +                    S+      L  + +    T         
Sbjct: 273 EESLEKASRDKTTFISTISHELRTPLNGIVGLSRMLLDTPLSGEQRKHLQTINVSAVTLG 332

Query: 248 --------AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
                     K D  K E +P   + E  + E E    +   Q   +     L +     
Sbjct: 333 NIFNDIIDMDKFDRRKLELFPAALNFEEFVAELEVLAALMAEQKGLRFDLERLTDL-PSL 391

Query: 300 FEYLSHRNHPSLSAYF 315
            E  + R    L    
Sbjct: 392 VEVDATRLRQVLWNLL 407


>gi|115522493|ref|YP_779404.1| PAS/PAC sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris BisA53]
 gi|115516440|gb|ABJ04424.1| PAS/PAC sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris BisA53]
          Length = 843

 Score =  322 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 125/711 (17%), Positives = 241/711 (33%), Gaps = 49/711 (6%)

Query: 123 DILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN----REFSGF 178
               +  ++ +  LL+      G        G      I+     +  +     RE SG 
Sbjct: 163 PEPALRMDHAVDALLESGE---GFLLHLVTAGG---RSIEAMGRAVGGQAIVRIRELSGL 216

Query: 179 RGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKN 238
           R                  +   +                +    +    +         
Sbjct: 217 R-----RELAETTQRYKSLQEETEMLRDFVFAAPWPIWTRRADGALTFANAAYARASEAA 271

Query: 239 KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE 298
            ++          D           ++ +S   +     +   +     Y   ++     
Sbjct: 272 SITDAVTQSVELLDSSDRAAVARALADGTSFNARLPI-VVGGERRIFDVYAQKVRG--GS 328

Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSV 357
           +   +      +L+A      +    T+D+      V+     L + N S+  L      
Sbjct: 329 AGIAIDANEAAALAAALVRMADAHRRTLDQLSSGVAVFDAQQRLAFYNDSYRRLWD---- 384

Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA---RLHTIQWNRENSLAMT 414
                   L  +       D++ +  +   R         A   RLH      +    + 
Sbjct: 385 --------LDRVFLDSNPDDSSVLDRLRAARKLPEQPDFRAWKTRLHEAYRAVDAVKDVW 436

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL----CSILEATSDGIAIINR 470
           ++P  +           G      D       +      L       L+  ++ +A+   
Sbjct: 437 YLPDGRTLSMVTTPNPEGGVTYLFDDVTESFDLARRYGALINVQRETLDNLTEAVAVFGS 496

Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH-YLTEILSLDLRQTLEKI- 528
            G     N   ++L+    E +  +P    +      + +   + + L   +     ++ 
Sbjct: 497 NGCAQLFNPPFARLWNLSPEALQLQPHIETVIGWCRPLFDDDAIWQTLRSAITGIENRVA 556

Query: 529 --TLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
                   +  +L+   +           LT  D ++ +  +  L    +  E     K 
Sbjct: 557 VPLKLQRSDGSVLACTTMPLP---DGATMLTFQDNTDTENVERALRERNEALETADQMKV 613

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
            F+  VS+E+R+PLT IIGF+  + +   GPL   +  EY +YI  S N +L I+N++LD
Sbjct: 614 KFVHHVSYELRSPLTTIIGFAHFLADASTGPLT-EKQAEYLSYITTSTNALLAIINNILD 672

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706
           ++ I++G M L+  PV + +A+  A+  +Q       I +       I R LAD R V Q
Sbjct: 673 LATIDAGAMALNLGPVDIRKAIDAAVEGIQDRLARDHIRLEIEVDPEIGRFLADERRVVQ 732

Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
           +  N+L+NA+ F+P  G I +    +   EV+  V D G G+     +K    F    +S
Sbjct: 733 VLYNLLANAVGFSPEHGAITLKAARSEK-EVVFTVIDKGPGIPPEVKDKVFDWFE--SHS 789

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
           +  R  G GLGL L ++ V+ + GK  + S   +GT +   FP+  +   H
Sbjct: 790 KGSRHRGAGLGLSLVRSFVELHGGKVEVNSVLGQGTTLTCSFPIDQSQQRH 840



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 54/415 (13%), Positives = 107/415 (25%), Gaps = 41/415 (9%)

Query: 55  TDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI 114
            +  Q   S     +    FVF          W   A G L   +    +         I
Sbjct: 221 AETTQRYKSLQEETEMLRDFVFAAPWP----IWTRRADGALTFANAAYAR---ASEAASI 273

Query: 115 GMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNRE 174
              +    ++L       +   L    ++       PI         D+ A  +      
Sbjct: 274 TDAVTQSVELLDSSDRAAVARALADGTSFN---ARLPIVVGGERRIFDVYAQKVRG---- 326

Query: 175 FSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL 234
             G  G  I           A   R+        +      +V   +  +          
Sbjct: 327 --GSAGIAI--DANEAAALAAALVRMADAHRRTLDQLSSGVAVFDAQQRLAFYNDSY--R 380

Query: 235 RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE-----QEDFHTINL-NQYTKKQY 288
           R+ +      +       VL   +      E+           E +  ++          
Sbjct: 381 RLWDLDRVFLDSNPDDSSVLDRLRAARKLPEQPDFRAWKTRLHEAYRAVDAVKDVWYLPD 440

Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN------LTPETVDKCPIPFFVY-SHGNL 341
             TL   +  + E         ++  FD          +  ET+D       V+ S+G  
Sbjct: 441 GRTLSMVTTPNPEGGVTYLFDDVTESFDLARRYGALINVQRETLDNLTEAVAVFGSNGCA 500

Query: 342 FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401
              NP F  L      + +++   + T++   +   ++      L  +        A   
Sbjct: 501 QLFNPPFARLWNLSP-EALQLQPHIETVIGWCRPLFDDDAIWQTLRSAITGIENRVAVPL 559

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
            +Q +  + LA T +P                  ++ DT   +R +      L +
Sbjct: 560 KLQRSDGSVLACTTMPLPDGA-------TMLTFQDNTDTENVERALRERNEALET 607


>gi|153005523|ref|YP_001379848.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter
           sp. Fw109-5]
 gi|152029096|gb|ABS26864.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter
           sp. Fw109-5]
          Length = 979

 Score =  322 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 101/522 (19%), Positives = 187/522 (35%), Gaps = 42/522 (8%)

Query: 315 FDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
                      +D  P    +    G +   N     L  Y S + +             
Sbjct: 5   SPSVALQFKPVLDAAPDAMVITDRVGRMVVVNSEAERLFGYGSGELLGSPVETLIPERFR 64

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA-MTFIPFEKANQFPENMPQNG 432
               ++  +  +  R+     A    L  ++ +     A ++  P E  +     M    
Sbjct: 65  TAHPHHRNRYFLDPRTRPMGGAGGVELFGLRKDGTEFPAEISLSPLETEDG----MFAIT 120

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
              +    R  +   +       ++LEA  D + I +R G +L  N    +LFGY  E++
Sbjct: 121 AIRDVTVRRKLESHTK-------ALLEAAPDAMVIADRRGKVLLVNAQAERLFGYTREEL 173

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK---ITLGSTKEEKLLSLRIIIKKLP 549
           L +     +     +    + T        + +        G  K+       I +  L 
Sbjct: 174 LGQRVEALIPPRFRAAHPAHRTRYFDEPRPRPMGAGGLELYGLRKDGTEFPAEISLSPLE 233

Query: 550 FSSCYSLT--MHDISEWKQEKN--------------KLSHAKKIAEKESSHKSDFLARVS 593
            +        + D++E K+ +               +L  A   +++    K+ F A VS
Sbjct: 234 TADGLLAITAIRDVAERKRAEEDRARLHAQLQATLEELGAAYDKSQQLERLKTQFFANVS 293

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HE+RTPL  I+G ++ +      P            I R+   +   VNDLLD++K+E+G
Sbjct: 294 HELRTPLALILGPADELLASDLPPGP----RRDVEVIARNARTLAKHVNDLLDVAKLEAG 349

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713
           KM L    V + + V    +     A  + +         +     D   ++++  N+LS
Sbjct: 350 KMALELSDVDVAQLVRLVAAHFDALAASREMAYSVEAPATLAA-RVDPDKLQRVVFNLLS 408

Query: 714 NAIHFTPSGGQIIISTTHTSNE-----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
           NA  FTP  G++  +            ++ + V D+G G+   E E     F +  +   
Sbjct: 409 NAFKFTPEAGKVRCTLRVEPEGAGSAPDLAIEVADSGPGVPPAERETVFARFTRGDDDTA 468

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            R  GTGLGL + +  V+ + G+  +   P  G +  +  PL
Sbjct: 469 RRVGGTGLGLAITRDFVELHGGRIALGEAPEGGAIFSVHLPL 510



 Score =  198 bits (504), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 91/634 (14%), Positives = 204/634 (32%), Gaps = 40/634 (6%)

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY 246
             + +   A   RL           +  +   +    + ++  P    R+   + S    
Sbjct: 353 LELSDVDVAQLVRLVAAHFDALAASREMAYSVEAPATLAARVDPDKLQRVVFNLLSNAFK 412

Query: 247 YAHKDD--VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
           +  +           P        L  +       +    ++  F        ++   + 
Sbjct: 413 FTPEAGKVRCTLRVEPEGAGSAPDLAIEVADSGPGVPPAERETVFARFTRGDDDTARRVG 472

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364
                          +     + + P    ++S      A                  AG
Sbjct: 473 GTGLGLAITRDFVELHGGRIALGEAPEGGAIFSVHLPLRAAAGAPAGQGTGEGASEYGAG 532

Query: 365 GLSTLLDAPKLSDN--NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
            +  L              +P++L   D        R              T    E   
Sbjct: 533 VVEELRSRATKPAATGERGRPLVLVVEDNP----DMRRFVGDALSGEFEVATAPDGEAGL 588

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
                 P + +  + +  R++  ++     +    L      +     +  +       +
Sbjct: 589 AAALARPPDAVVTDMMMPRMSGEELVRAARR-HDALAGVPVLVLTARADDALR------A 641

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
           +L     +D L KPF+              L    +  +   L +  L      +   + 
Sbjct: 642 QLLRDGAQDYLMKPFSP-----------EELRARTANLVSVKLAREVLQRELRTQTSDVV 690

Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
            +  ++           +++   +E+ +         + S+ K++FL  VSHE+RTPLT 
Sbjct: 691 ALAGEVAARKRELEAALEVTRLAKEEAE---------RASAVKTNFLRLVSHELRTPLTT 741

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           +    + +      PL  P   E       +   +  +V  LL  +++ SG++++  E V
Sbjct: 742 LHLQLQRLTRDTEHPL-EPHQREIVRRGSFAATRLTGLVEALLHEAQLASGRLSVAVEDV 800

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
            L   V++ +   +  A++K + +R    +++P +  + R +K I  N++ NA+ FT +G
Sbjct: 801 DLGALVAKVVEEHRPLADDKGLALRLRARDHVPWVETEPRFLKLILSNLVGNAVKFTAAG 860

Query: 723 GQIIISTTHTSNE-EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
              ++         E+ + VRD+G G+   +  +  +PF +     +    G GLGL + 
Sbjct: 861 ---VVEVGVEGRGDELRVEVRDSGPGIAAEDRARVFEPFERGVRVAEQFVPGLGLGLAVV 917

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
           + +  A      + S+ + G+   +  P    S 
Sbjct: 918 RDLAAAIGATVELSSSSSAGSTFTVTLPRRQPSA 951



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 32/317 (10%), Positives = 78/317 (24%), Gaps = 28/317 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID--PNNHIGDLLKRQNTWYG- 145
            D  G +  ++ E  +  G  + +++G  +  +         P++     L  +    G 
Sbjct: 26  TDRVGRMVVVNSEAERLFGYGSGELLGSPVETLIPERFRTAHPHHRNRYFLDPRTRPMGG 85

Query: 146 ----KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR---ALGK 198
               +      +GT    P +++  P+ + +  F+       +    V            
Sbjct: 86  AGGVELFGLRKDGT--EFPAEISLSPLETEDGMFA----ITAIRDVTVRRKLESHTKALL 139

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
                   + + +     V  +   +F         +    +       AH     +   
Sbjct: 140 EAAPDAMVIADRRGKVLLVNAQAERLFGYTREELLGQRVEALIPPRFRAAHPAHRTRYFD 199

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK--ESFEYLSHRNHPSLSAYFD 316
            P       +   +      +  ++  +     L+                         
Sbjct: 200 EPRPRPMG-AGGLELYGLRKDGTEFPAEISLSPLETADGLLAITAIRDVAERKRAEEDRA 258

Query: 317 EGENLTPETVDKCPIP----FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                   T+++          +      F+AN S  L T         I G    LL +
Sbjct: 259 RLHAQLQATLEELGAAYDKSQQLERLKTQFFANVSHELRTPLA-----LILGPADELLAS 313

Query: 373 PKLSDNNAIKPVMLYRS 389
                      V+   +
Sbjct: 314 DLPPGPRRDVEVIARNA 330



 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/248 (11%), Positives = 65/248 (26%), Gaps = 12/248 (4%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI-LHIDPNNHIGDLLKRQNTWYG--- 145
           D  G +  ++ +  +  G    +++G R+  +           H                
Sbjct: 150 DRRGKVLLVNAQAERLFGYTREELLGQRVEALIPPRFRAAHPAHRTRYFDEPRPRPMGAG 209

Query: 146 --KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +      +GT    P +++  P+ + +   +      +    R + D   L  +L   
Sbjct: 210 GLELYGLRKDGT--EFPAEISLSPLETADGLLAITAIRDVAERKRAEEDRARLHAQLQAT 267

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
              L         +E+ K   F+  S      +   +    E  A            ++ 
Sbjct: 268 LEELGAAYDKSQQLERLKTQFFANVSHELRTPLALILGPADELLASDLPPGPRRDVEVIA 327

Query: 264 SEESSLPEQ----EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
               +L +      D   +   +   +     +    +    +          AY  E  
Sbjct: 328 RNARTLAKHVNDLLDVAKLEAGKMALELSDVDVAQLVRLVAAHFDALAASREMAYSVEAP 387

Query: 320 NLTPETVD 327
                 VD
Sbjct: 388 ATLAARVD 395


>gi|21673490|ref|NP_661555.1| sensor histidine kinase [Chlorobium tepidum TLS]
 gi|21646596|gb|AAM71897.1| sensor histidine kinase [Chlorobium tepidum TLS]
          Length = 399

 Score =  322 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 90/412 (21%), Positives = 176/412 (42%), Gaps = 33/412 (8%)

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR---------KMEIEVMQLCSILEATS 462
            +            E   +  ++ +D   R+ +          ++  +   L  +L +  
Sbjct: 7   LVRIASAADRFLHGETEVKIPVKHDDEIGRLARAFNYLSEEIVRLTRKEEWLREVLSSIR 66

Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522
           + I + N  G I+  N A S+LF          P T        + M      +      
Sbjct: 67  EAIIVTNASGEIVLANPAASRLFMIEAARKRSIPVTNI----EDAAMRELFERVQKRQSG 122

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
              E++T  ++K ++ L +  +      +      L ++D++  +  +            
Sbjct: 123 IYNEELTAMTSKGKRTLKVTAVPVMRRGALFDGTVLVINDVTRLRNLE------------ 170

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
               + DF++ VSHE+RTPL +I G++E +         N     + N I +    +  +
Sbjct: 171 --RTRRDFVSSVSHELRTPLASIKGYTETLLEGAMNDPENATA--FLNIIHQEAEQLTAL 226

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILAD 700
           VND+LD+S+IESGK+   FEPV +   + +  +L +  A  K + I  +    +P +LAD
Sbjct: 227 VNDVLDLSRIESGKIAYSFEPVDVKPQLEKTAALFEPAAARKGVRIELNAPEGLPAVLAD 286

Query: 701 LRSVKQIALNILSNAIHFTP-SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKP 759
                 +  N++ NAI +     G++ +S  + + + V + V D G+G+   +L++  + 
Sbjct: 287 RSYFDIVVRNLIDNAIKYVDAESGRVRVS-AYATGDSVSIEVADNGIGIPQADLDRIFER 345

Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
           F ++  ++     GTGLGL + K +V A+ GK  + S   +GT   +  P+ 
Sbjct: 346 FYRVDKARSRELGGTGLGLSIVKHIVLAHKGKVEVRSRINRGTTFTVTLPVA 397


>gi|218782152|ref|YP_002433470.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfatibacillum alkenivorans AK-01]
 gi|218763536|gb|ACL06002.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfatibacillum alkenivorans AK-01]
          Length = 609

 Score =  322 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 86/625 (13%), Positives = 202/625 (32%), Gaps = 27/625 (4%)

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
           R   +   +    +    V    Y +         +   +      E            +
Sbjct: 4   RETPRLISILHAMQDGVYVVNADYTVEFMNEAMIRIFGDHTGKKCHEMLIQSQAPCSWCR 63

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
              +  E++++  + D   +       +           +   +                
Sbjct: 64  AREVFEEQAAVQYEMDLEGVGKVFRITELPLTNADQTISKMSIFRDVTRSKQQERRIRSH 123

Query: 319 ENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
           +       D+ P   +V S  GN   ANP+ L +  Y S ++         +       D
Sbjct: 124 KQDYERLFDQVPCGVYVSSKEGNFLDANPALLKMLNYDSKEEFLAMDIARDVYLNAADRD 183

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
                 + +          +    T        +++      + +   E +   GI  + 
Sbjct: 184 K----FMEMIEKSGMVSNYAVDFKT---RDGKPVSVIIAGHVRYDDHGEVLGYEGIIVDQ 236

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK-P 496
              ++ +R+++        +++++ + I   + +G IL  NR   +L GY   D++ +  
Sbjct: 237 SQRKLMEREVQEAHDFFDKVIQSSPNAIMAADMKGEILIWNRGAEELLGYKAHDVIGRMN 296

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY-- 554
                 +     +   +                L  T+  + +   +    +  +     
Sbjct: 297 IVDVYPEGMARRVMKMMRSQEHGGRGLLRSYPLLARTRAGEFIEANMSAAIIYDAQGREM 356

Query: 555 --SLTMHDISEWKQEKNKLSHAKKIAEKESS--HKSDFLARVSHEIRTPLTAIIGFSEVI 610
                M D+ E    + KL+  K    +           ++++HE+  PL  I+   E++
Sbjct: 357 ASVGIMVDMRERASMEQKLNSVKDQLLQSEKLAAMGKLTSQLAHELNNPLFGIMNTLELL 416

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
           K +        +  +  +        + +++  +L  SK +  +  +      ++  + E
Sbjct: 417 KTEI---PETSKRRKILDMALSETVRISEMLKKMLSFSKPDQEERQI----TDINTILEE 469

Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
            + L +    E  + +       +  ++A    ++Q+ LN+++NA      GG   I T+
Sbjct: 470 LLLLHERQLQENDVKVVRDLTEGLEPVMASKNQLRQVFLNVIANARDAMQEGGTFTI-TS 528

Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
               + + + + DTGVG+    L K    F     S     +G GLGL +    +  + G
Sbjct: 529 RAQGDFIYIDLADTGVGIPEENLSKIFDTFFTTKGS----VQGVGLGLSVCYGFIRDHGG 584

Query: 791 KFYIFSTPAKGTLIEIIFPLYDTSH 815
              + S P +GT   +  P+Y    
Sbjct: 585 DIKVHSEPGEGTTFTVSLPIYRPEE 609



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/234 (7%), Positives = 63/234 (26%), Gaps = 12/234 (5%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNTWYGKTTL 149
            G   + +  L K +   + +       D++  ++++  +     +++++          
Sbjct: 144 EGNFLDANPALLKMLNYDSKEEF--LAMDIARDVYLNAADRDKFMEMIEKSGMVSNYAVD 201

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
           +        V + +A    Y  + E  G+ G  IV  ++     R + +  D     +  
Sbjct: 202 FKTR-DGKPVSVIIAGHVRYDDHGEVLGYEGI-IVDQSQRKLMEREVQEAHDFFDKVIQS 259

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMK--NKVSSLTEYYAHKDDVLKT----EKYPLLT 263
                 + + +   +   +     L  K  + +  +     + + + +      +     
Sbjct: 260 SPNAIMAADMKGEILIWNRGAEELLGYKAHDVIGRMNIVDVYPEGMARRVMKMMRSQEHG 319

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
                        T              + +        +         A  ++
Sbjct: 320 GRGLLRSYPLLARTRAGEFIEANMSAAIIYDAQGREMASVGIMVDMRERASMEQ 373


>gi|159897466|ref|YP_001543713.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159890505|gb|ABX03585.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 534

 Score =  322 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 102/532 (19%), Positives = 210/532 (39%), Gaps = 40/532 (7%)

Query: 308 HPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
                 Y           +D  P+    +     L   N   + L       +I  A GL
Sbjct: 8   RLRQRDYLLRLMRAMAAQLDAEPLLNLVIAQAVELLAGNYGLIALYNPNQRLEIRAAYGL 67

Query: 367 S-----------TLLDAPKLSDNNAIKPV-MLYRSDRTCIAASARLHTIQWNRENSLAMT 414
           +            +L++     ++    +  L  +    +     L  +  +++  + + 
Sbjct: 68  TPSLWSAFDEILHVLESEGPQSSHMSNELSRLANALNVPLRQVVALPMVTGDQQLGMMLV 127

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINK----RKMEIEVMQLCSILEATSDGIAIINR 470
                      ++        +     +N      +   E  +L +I+E+++DG+ +++ 
Sbjct: 128 LRAALNVGFTADDRQLLSAFVDFAAIAVNNSQLYAEAIAERGRLDAIIESSADGMMMLDT 187

Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT----EILSLDLRQTLE 526
              I   N A+ +L G+  E+ L +P    L  +    +N  LT    ++   +   ++E
Sbjct: 188 RWRITRFNAAMERLTGWSREEALGRPCAEVLAIHNQQGVNICLTACPLQLFPDNDHPSVE 247

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
                    E  +     + + P          + DI++ K+++                
Sbjct: 248 GWVTHRDGHEIYVGSSYSVVREPTGRFGGAIANIRDITKQKRDE--------------QQ 293

Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
           +S F++ +SHE++TP+  I G++  +       L      E    I+   + +  ++ DL
Sbjct: 294 QSTFISVMSHELKTPVAIIKGYASTLSRTDV-KLNKATKAEMLTGIEEEADRLARLIGDL 352

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704
           L++S++++G + LH  P  L E  +  +        ++R   +  F   +P + AD   +
Sbjct: 353 LEVSRMQAGGLRLHPAPFDLSEL-AADVVAAFAATVDQRFEFQLRFEPKLPHVYADQERI 411

Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764
           + +  N++SNAI ++P GG I +      N  V+  V D G+G+   EL K   PF ++ 
Sbjct: 412 RMVLSNLISNAIKYSPEGGVIRLG-GWPENGHVLSYVTDEGIGIAQEELPKLFTPFYRVD 470

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           N      +G GLGL L K++++A+ G+ +  ST  KG+      P+   S P
Sbjct: 471 NRLARETQGAGLGLYLTKSIIEAHGGRMWADSTVGKGSRFYWTLPIAPPSLP 522



 Score = 45.4 bits (106), Expect = 0.039,   Method: Composition-based stats.
 Identities = 23/261 (8%), Positives = 60/261 (22%), Gaps = 19/261 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-----IGDLLKRQNTW 143
           +D    +   +  + +  G    + +G    +V  I +    N         L    +  
Sbjct: 185 LDTRWRITRFNAAMERLTGWSREEALGRPCAEVLAIHNQQGVNICLTACPLQLFPDNDHP 244

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR---- 199
             +  +   +G    + +  +   +      F G      +                   
Sbjct: 245 SVEGWVTHRDGH--EIYVGSSYSVVREPTGRFGGA--IANIRDITKQKRDEQQQSTFISV 300

Query: 200 -LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
              +  + +  IK   S++ +    +           ++ +   L        +V     
Sbjct: 301 MSHELKTPVAIIKGYASTLSRTDVKLNKATKAEMLTGIEEEADRLARLIGDLLEV----- 355

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
             +        P   D   +  +           +   +  FE      +          
Sbjct: 356 SRMQAGGLRLHPAPFDLSELAADVVAAFAATVDQRFEFQLRFEPKLPHVYADQERIRMVL 415

Query: 319 ENLTPETVDKCPIPFFVYSHG 339
            NL    +   P    +   G
Sbjct: 416 SNLISNAIKYSPEGGVIRLGG 436


>gi|78188414|ref|YP_378752.1| multi-sensor signal transduction histidine kinase [Chlorobium
           chlorochromatii CaD3]
 gi|78170613|gb|ABB27709.1| multi-sensor signal transduction histidine kinase [Chlorobium
           chlorochromatii CaD3]
          Length = 595

 Score =  322 bits (826), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 83/414 (20%), Positives = 171/414 (41%), Gaps = 32/414 (7%)

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
           A +   +   + S A++  P  +  +    +         +                 ++
Sbjct: 205 AAVARQRLQGDFSAALSIKPKHEFGELAHALNSMSDSVITM---------RRHEEWYLAV 255

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
             A  + I + +  G I+  N + ++ F         +P     +      +      + 
Sbjct: 256 FSAIREAIIVTDAAGDIIFANPSAARTFRMGQTIFTSRPVKHLPDP----TLQELFNRVH 311

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAK 575
           +  +    E++ L + + E+++ +  +               ++DI+  +  +       
Sbjct: 312 TTRVMVRKEEVALSTARGERIMQINSMPLATMGKTYEGCVFVLNDITTVRNLE------- 364

Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
                    + DF+A VSHE+RTPLT I G++E +             + +   I ++  
Sbjct: 365 -------KIRRDFVASVSHELRTPLTVISGYTETLLEGALH--DPAHAVPFLKTILQASQ 415

Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695
            +  +VND+LD+S+IESG ++  F  V +   V +A+  ++    +K+I +       +P
Sbjct: 416 QLTALVNDVLDLSRIESGAIDYQFTSVDIGGVVRKAVEFLKPSLEKKQIRLDVRITAGLP 475

Query: 696 RILADLRSVKQIALNILSNAIHFTPS-GGQIIISTTHTSNEEVILRVRDTGVGMTNYELE 754
            I AD R +  +  N++ NAI+      G+I IS    + E V L V D GVG+   +L+
Sbjct: 476 TIYADARYLDIVIRNLVDNAINAVDERNGRIRISAFAMNKEVVRLEVEDNGVGIAKADLD 535

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           +  + F ++   +  +  GTGLGL + K +V A+ G   + S    G++  ++ 
Sbjct: 536 RIFERFYRVDKGRSRQYGGTGLGLSIVKHIVLAHQGDIVVNSKLNHGSVFSVLL 589


>gi|71908897|ref|YP_286484.1| PAS/PAC sensor signal transduction histidine kinase [Dechloromonas
           aromatica RCB]
 gi|71848518|gb|AAZ48014.1| PAS/PAC sensor signal transduction histidine kinase [Dechloromonas
           aromatica RCB]
          Length = 856

 Score =  322 bits (825), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 117/636 (18%), Positives = 238/636 (37%), Gaps = 36/636 (5%)

Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS 242
           ++   R         + +D   +    I +    +   +    +    P +  +  ++ +
Sbjct: 102 LLRDARGHGFHNPEDEEIDNPLTPAAVIAEMQHFLSLGQKLATTPYDSPEYRPLAEELVA 161

Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302
           L+       D L             +L   +    +           G L+   ++    
Sbjct: 162 LSLQVLPDLDRLVGLYQAQSEQRTDALRFLQACALVAALCLLAFSGLGILRPLIRQVRHA 221

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIE 361
           L  +     +      EN     ++      F +  +G + +AN +   +    +   + 
Sbjct: 222 LEEQEKSETALRHAIEENRL--ILETTDEGMFGIDRNGYIRFANRAAATMLGRDASSLVG 279

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                  +  +             +  S      +    +        +  +TF      
Sbjct: 280 RHHHPEIITSSTGCP------ICRMLASAGPTRVSDGWFNHGIPQPNAAEPITFPVEYSV 333

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
              P+         +  D    + K++    +L   +EA  D  A+ + E  ++  N   
Sbjct: 334 AARPDGEGTIISFRDIADRHAAEIKLQRFQQRLVDAIEAMDDAFALFDGEDRLILHNLRF 393

Query: 482 SKLF---------GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
           ++LF         G    + +       L   T    N +L   + +  +          
Sbjct: 394 AELFSPESSTIRIGMSFSEFIHDIAVQGLYPQTTDGGNDWLATRMEMHRQAAGSSEIPL- 452

Query: 533 TKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
                 L +    ++        +   D+S  K+           A++ S  KS+FLAR+
Sbjct: 453 -ANGSWLRIT---ERHTREGGTVVIWSDVSNLKRA-------LIAADQGSQAKSEFLARM 501

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHE+RTPL AI+GF+ V++     PL + +  EY ++I   G  +L ++N++LD+S IES
Sbjct: 502 SHELRTPLNAILGFARVLEKDAASPLNDAQQ-EYVHHILHGGQHLLGLINEILDLSAIES 560

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712
           GK+ +  E + L   + E ++L++  A+ + I ++ S + +   + AD + +KQ+ LN+L
Sbjct: 561 GKLKVEIEDIDLPSVLHECLALIKPLASNREITLKISGSES-ATVAADRKRLKQVLLNLL 619

Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           SNAI +   GG++ ++   T +  + L + DTG G+     ++  +PF           E
Sbjct: 620 SNAIKYNRHGGEVQVNIGATPSG-IRLDISDTGQGIPPELAQRVFQPF---DRLGLENSE 675

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           GTG+GL + + +V+   G     ST   GT   +  
Sbjct: 676 GTGIGLAITRRLVELMGGSICFESTVNIGTTFRVEL 711



 Score = 48.1 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/307 (8%), Positives = 73/307 (23%), Gaps = 23/307 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLC-DVSDILHIDPN-NHIGDLLKRQ--N 141
            + ID +GY++  +      +G  A  ++G     ++       P    +      +  +
Sbjct: 250 MFGIDRNGYIRFANRAAATMLGRDASSLVGRHHHPEIITSSTGCPICRMLASAGPTRVSD 309

Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
            W+      P     +  P++ +             F            +      +R  
Sbjct: 310 GWFNHGIPQPNAAEPITFPVEYSVAARPDGEGTIISF------RDIADRHAAEIKLQRFQ 363

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
           ++     E      ++   +  +                          +          
Sbjct: 364 QRLVDAIEAMDDAFALFDGEDRLILHNLRF-------------AELFSPESSTIRIGMSF 410

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
                    +     T +             +  +  S   L++ +   ++         
Sbjct: 411 SEFIHDIAVQGLYPQTTDGGNDWLATRMEMHRQAAGSSEIPLANGSWLRITERHTREGGT 470

Query: 322 TPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
                D   +   + +      A   FL    ++    +    G + +L+    S  N  
Sbjct: 471 VVIWSDVSNLKRALIAADQGSQAKSEFLARMSHELRTPLNAILGFARVLEKDAASPLNDA 530

Query: 382 KPVMLYR 388
           +   ++ 
Sbjct: 531 QQEYVHH 537


>gi|229514004|ref|ZP_04403466.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae
           TMA 21]
 gi|229349185|gb|EEO14142.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae
           TMA 21]
          Length = 785

 Score =  322 bits (825), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 87/387 (22%), Positives = 165/387 (42%), Gaps = 19/387 (4%)

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
            +E E       + ++      L S ++A+ D I   N +G     NRA+ +L G    +
Sbjct: 135 DLENEVYQREKTQVELAERTALLRSFIDASPDLIYYRNAKGEFSGCNRAMEELTGKRESE 194

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
           ++         +     +     ++ + +   T E+        +    LR +       
Sbjct: 195 LVGLTPWDVYRKEIAQSIVETDQQVFNNNTAITYEQWLEYPDGRKSFFELRKVPFYNKDG 254

Query: 552 S--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                     DI+E K+ +  L       EK S  K+ F++ +SHE+RTPL  I+G S +
Sbjct: 255 RHLGLVGFGRDITERKRHEESL-------EKASRDKTTFISTISHELRTPLNGIVGLSRM 307

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           + +            ++   I+ S   + +I ND++D+ K +  K+ L    ++ +E V+
Sbjct: 308 LLDTPLSS----EQRKHLQTINVSAVTLGNIFNDIIDMDKFDRRKLELFPAALNFEEFVA 363

Query: 670 EAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI-II 727
           E   L  L A +K +        ++P  +  D   ++Q+  N+LSNA+ FT  GG +  +
Sbjct: 364 EIEVLAALMAEQKGLRFDLERLTDLPSLVEVDSTRLRQVLWNLLSNAMKFTKEGGVVMTV 423

Query: 728 STTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGEGTGLGLPLAKAMV 785
           S    +   E+ + V DTG+G+   E EK    + Q+ + +      GTG+GL +++ ++
Sbjct: 424 SAECDAQHAEITIEVEDTGIGIPEAEQEKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLI 483

Query: 786 DANMGKFYIFSTPAKGTLIEIIF--PL 810
               G   + S    G+   +    PL
Sbjct: 484 KLMGGDISVNSEEGFGSTFTVTIRVPL 510



 Score = 45.4 bits (106), Expect = 0.045,   Method: Composition-based stats.
 Identities = 33/240 (13%), Positives = 60/240 (25%), Gaps = 18/240 (7%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           +A G     +  + +  G    +++G+   DV               +   NT       
Sbjct: 172 NAKGEFSGCNRAMEELTGKRESELVGLTPWDVYRKEIAQSIVETDQQVFNNNTAITYE-Q 230

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
           W           +L  +P Y+++    G  GFG               ++  +  +    
Sbjct: 231 WLEYPDGRKSFFELRKVPFYNKDGRHLGLVGFG--RDITERKRHEESLEKASRDKTTFIS 288

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY--------------AHKDDVLK 255
                           S+      L  + +    T                   K D  K
Sbjct: 289 TISHELRTPLNGIVGLSRMLLDTPLSSEQRKHLQTINVSAVTLGNIFNDIIDMDKFDRRK 348

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
            E +P   + E  + E E    +   Q   +     L +      E  S R    L    
Sbjct: 349 LELFPAALNFEEFVAEIEVLAALMAEQKGLRFDLERLTDL-PSLVEVDSTRLRQVLWNLL 407


>gi|323706156|ref|ZP_08117724.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534449|gb|EGB24232.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 565

 Score =  322 bits (825), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 87/369 (23%), Positives = 160/369 (43%), Gaps = 42/369 (11%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +    +ME E  ++ +I+   SDG+   N    I+  N A  K+ G              
Sbjct: 236 KTTLNEMENEKSKVEAIISYMSDGVIATNDLNRIILFNDAAEKMIG-------------- 281

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP-FSSCYSLTMH 559
                   M+  + +I    L+ T   I        K+L   +   K+          +H
Sbjct: 282 ----EKLAMDEPIEKIAQGQLKNTESLIFC----NGKILKSFVSPIKVDKNIDGNVFVLH 333

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           DI+E +                 + + +F+A VSHE+RTPLT I  ++E + N     + 
Sbjct: 334 DITEQQNL--------------DNMRKEFVANVSHELRTPLTTIKSYTETLLND---GVD 376

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
           +     +   ID+  + +  +V DLL +S+++S    L+    +L+E V E +  +++ A
Sbjct: 377 DEMRNRFLYIIDKEVDRMTRLVKDLLLLSRMDSNG-KLNLTEANLNEFVEEVLYKIKIEA 435

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
            +K   +          +  D   ++Q+ LNI+SN+I +T  GG + + T +  +    +
Sbjct: 436 QKKNQKLLFCAGEEKRNVNIDKDKMEQVILNIVSNSIKYTNPGGYVRVFTKYLDD-YAYI 494

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V D G+G+   +L +  + F ++   +     GTGLGL +AK +V A+ G+  I S   
Sbjct: 495 VVNDNGIGIPKKDLPRIFERFYRVDKGRSRELGGTGLGLAIAKEIVTAHGGEINIESEIG 554

Query: 800 KGTLIEIIF 808
            GT + +  
Sbjct: 555 VGTTVTVKL 563


>gi|295681253|ref|YP_003609827.1| signal transduction histidine kinase with CheB and CheR activity
            [Burkholderia sp. CCGE1002]
 gi|295441148|gb|ADG20316.1| signal transduction histidine kinase with CheB and CheR activity
            [Burkholderia sp. CCGE1002]
          Length = 1360

 Score =  322 bits (825), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 123/739 (16%), Positives = 247/739 (33%), Gaps = 66/739 (8%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            +     +  +S+   + +     +     +  V   L ++    I   L    +   +  
Sbjct: 540  VSRESEIVHLSDRAGRFLQYSGGEPSHNIVAVVRPELRLELRTAIYQALHTNRSVEARRV 599

Query: 149  LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                +G + +  +++ A P++                                       
Sbjct: 600  RIERDGRSYF--VNMTARPVHDPE-----------------------------------A 622

Query: 209  EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
                     ++ +  + + ++    ++    +S L        + L++      TS E  
Sbjct: 623  NADFVLVLFDEVEDSMANAETASVDVQKDPIISQLERELQRTKEQLQSTIEQSETSTEEL 682

Query: 269  LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG--ENLTPETV 326
                E+   IN    +  +   T +   +   E L+  N    S   + G   +     +
Sbjct: 683  KASNEELQAINEELRSATEELETSKEELQSINEELTTVNAELKSKVEETGKINDDLHNLI 742

Query: 327  DKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
                I   FV  +  +    P    +      D       ++  L+  KL+D+ A     
Sbjct: 743  AANDIGTIFVDRNICIKRYTPRATDVFSIIPSDIGRSLLDITHRLEYDKLADDAAEAFDS 802

Query: 386  LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
            L   +R   +   R                                    +    R  + 
Sbjct: 803  LRLIERELKSNDGR------------WYLARFVPYRTTEDRIDGAVLSFIDITGRRQAED 850

Query: 446  KMEIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            ++     ++  + E T D  I   +  G+I S N    ++FGY   +++ +   +     
Sbjct: 851  RLREGERRMRIVAEGTKDYAIITFDENGVINSWNAGAERIFGYSEAEMIGQSADILYTDE 910

Query: 505  TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDIS 562
              +       E     L    E+      K+        ++ +L       ++    D+ 
Sbjct: 911  DRAANVAK-REFAEARLNGRAEEERWHLRKDGTRFFASGVLSRLDEPGISGFAKITRDLG 969

Query: 563  EWK------QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            E+       +  +  +       +    + +FLA VSHE++ PL  I   +E +  +   
Sbjct: 970  EFASDATSGRGTHVETLRAASEREAQRRRDEFLAVVSHELKHPLNLISASAE-LIARAPE 1028

Query: 617  PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
               N       + I R+      I++DLLDIS++ +GK+++    V + E V    S VQ
Sbjct: 1029 TRQNLNVSRATDTIRRTVIGQAQIIDDLLDISRVRTGKLSVVRTVVDMREIVQRVCSAVQ 1088

Query: 677  LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
              A ++ I +     +    I ADL  ++QI  N++SNA+ FT  G  I +S     + E
Sbjct: 1089 DDAAQRGITLSVEVTDAPVIIHADLTRIEQIVWNLISNALKFTQRGS-IQVSLQVNDHAE 1147

Query: 737  VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
             +LRV DTG G+    L    + F Q  +    R  G G+GL L + +V+ + G     S
Sbjct: 1148 AVLRVSDTGTGIEASLLPHIFEMFQQSRDPGSRR-GGLGIGLALVRDLVNLHGGAVRAES 1206

Query: 797  -TPAKGTLIEIIFPLYDTS 814
                +G    +  P +  +
Sbjct: 1207 DGVGRGATFTVTLPTHRLA 1225



 Score = 46.2 bits (108), Expect = 0.026,   Method: Composition-based stats.
 Identities = 38/391 (9%), Positives = 88/391 (22%), Gaps = 22/391 (5%)

Query: 90   DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
            D +G +   +    +  G    +MIG     +        N    +  + +     +   
Sbjct: 875  DENGVINSWNAGAERIFGYSEAEMIGQSADILYTDEDRAANVAKREFAEARLNGRAEEER 934

Query: 150  WPIEGTNLYVPIDLAALPIYSRNREFSGFRG-------FGIVHVNRVDNDPRALGKRLDK 202
            W +           + +         SGF         F     +        L    ++
Sbjct: 935  WHLRKDGTRFF--ASGVLSRLDEPGISGFAKITRDLGEFASDATSGRGTHVETLRAASER 992

Query: 203  KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP-- 260
            +     +      S E +        S     R      +L    A              
Sbjct: 993  EAQRRRDEFLAVVSHELKHPLNLISASAELIARAPETRQNLNVSRATDTIRRTVIGQAQI 1052

Query: 261  ---LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
               LL        +     T+   +   ++    +Q+++ +    LS     +      +
Sbjct: 1053 IDDLLDISRVRTGKLSVVRTVVDMREIVQRVCSAVQDDAAQRGITLSVEVTDAPVIIHAD 1112

Query: 318  GENLTPETVDKCPIPFFVYSHGNL---FYANPSFLLLTKYKSVDDIEIAGGLSTLLD--- 371
               +     +           G++      N     + +         A  L  + +   
Sbjct: 1113 LTRIEQIVWNLISNALKFTQRGSIQVSLQVNDHAEAVLRVSDTGTGIEASLLPHIFEMFQ 1172

Query: 372  --APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
                  S    +   +    D   +   A           +     +P  +         
Sbjct: 1173 QSRDPGSRRGGLGIGLALVRDLVNLHGGAVRAESDGVGRGATFTVTLPTHRLATRTSAGI 1232

Query: 430  QNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
            +   EP      +        V     +LE+
Sbjct: 1233 EITGEPLKGTRILMVDDDAATVETFKLLLES 1263



 Score = 39.6 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 21/193 (10%), Positives = 51/193 (26%), Gaps = 11/193 (5%)

Query: 279 NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH 338
             N   +      +  +   S   L     P     F  G+          P    V   
Sbjct: 484 RANMAVRGDTPVPIAISGTMSSRPLVTTVQPPGRRRFSFGDLHQRLVEQYAPPSVLVSRE 543

Query: 339 GNLFYANPSFLLLTKYKSVDDIEIAGGL----------STLLDAPKLSDNNAIKPVMLYR 388
             + + +       +Y   +       +          + +  A   + +   + V + R
Sbjct: 544 SEIVHLSDRAGRFLQYSGGEPSHNIVAVVRPELRLELRTAIYQALHTNRSVEARRVRIER 603

Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
            D      +     +     N+  +  +  E  +        +    +D      +R+++
Sbjct: 604 -DGRSYFVNMTARPVHDPEANADFVLVLFDEVEDSMANAETASVDVQKDPIISQLERELQ 662

Query: 449 IEVMQLCSILEAT 461
               QL S +E +
Sbjct: 663 RTKEQLQSTIEQS 675


>gi|268317957|ref|YP_003291676.1| PAS/PAC sensor signal transduction histidine kinase [Rhodothermus
           marinus DSM 4252]
 gi|262335491|gb|ACY49288.1| PAS/PAC sensor signal transduction histidine kinase [Rhodothermus
           marinus DSM 4252]
          Length = 628

 Score =  322 bits (825), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 83/642 (12%), Positives = 206/642 (32%), Gaps = 38/642 (5%)

Query: 191 NDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK 250
               A    L         I +           + ++      L     V         +
Sbjct: 2   EQAVARPSWLQHLPVAAALIDETLRYRA-----VNARWCRTFALAADEVVGRAHAELFEE 56

Query: 251 DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG--TLQNNSKESFEYLSHRNH 308
           D    T+    +        E+      +   +  + +    +L         +      
Sbjct: 57  DGGYWTQALRRVLQGAVVEGEEMLLKRRDGPAFWVRWWGQTCSLGQQRGVILVFEDQTEM 116

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
                  +    L    +        V          P +    +      +        
Sbjct: 117 HRTREALEASRRLLTRVLSCSLEGIMVLR--------PVYQPDGEVADFVWLLANPRAHA 168

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA--MTFIPFEKANQFPE 426
           LL   +L      + +          A    +   +  R            + +      
Sbjct: 169 LLRQSELEGRRLREVLPEAMLPGFFEACVQVVQRGEPLRRTFCLKQTDRSLWLEMAATRL 228

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
           +     I  +  + R  + K+         + E  +D +A+ + EG I+  + +  ++ G
Sbjct: 229 DEGVAVIFRDVTEAREAEAKLREREQLFRLLAENMTDLVALHDAEGRIVYVSPSAERIVG 288

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
           Y  E+++      F        +     +    D    L  +     ++     L   ++
Sbjct: 289 YTPEELIGHRLEEFWHPEDRKRLPTLPEQAGEEDHPGVL--VYRFRHRQGGYRWLETHVR 346

Query: 547 KLPFSSCYSLTM----HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
            +   +   + +     D+++  + +  L+ + +  ++ +    DF    SH+++ PL  
Sbjct: 347 AIRDETGRLVQLQTSSRDVTDRVEAEQALARSNETLQQRNRELQDFAYIASHDLQEPLRK 406

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           +  F+E +  + +  + +     Y + +  +   +  ++ DLL  S++ +      FE V
Sbjct: 407 VRAFAE-LLKEEYESVLDDEGRYYLDRMQDAAQRMSRLIEDLLTFSRVTTQGRP--FERV 463

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
            L   + + ++ +++   E    +      + P + AD   ++Q+  N++ NA+ F    
Sbjct: 464 DLHAILEQVLADLEVRIAETDAQVHVE--GHWPVVEADPTQMRQLLQNLIGNALKFHHPE 521

Query: 723 G--QIIISTTHTS---NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
              ++ +           + ++ V+D G+G     L++   PF ++    + R  GTG+G
Sbjct: 522 RTPEVWLRARLEETPAGTQCVIEVQDNGIGFDEKYLDRIFSPFQRLHG--RGRYAGTGMG 579

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819
           L + + +V+ + G+    S P +G    +  PL     P D 
Sbjct: 580 LAICRRIVERHHGQLTARSRPDEGATFIVQLPLM---QPPDA 618



 Score = 98.9 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 49/505 (9%), Positives = 131/505 (25%), Gaps = 37/505 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID     + ++    +T    A +++G    ++ +         +  +L+       +  
Sbjct: 21  IDETLRYRAVNARWCRTFALAADEVVGRAHAELFEEDGGYWTQALRRVLQGAVVEGEEML 80

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF-GIVHVNRVDNDPRALGKRLDKKFSHL 207
           L   +G   +V         + +       RG   +       +  R   +   +  + +
Sbjct: 81  LKRRDGPAFWVR-------WWGQTCSLGQQRGVILVFEDQTEMHRTREALEASRRLLTRV 133

Query: 208 HE-IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
                +G   +                L      + L +       + +     +L    
Sbjct: 134 LSCSLEGIMVLRPVYQPDGEVADFVWLLANPRAHALLRQSELEGRRLREVLPEAMLPGFF 193

Query: 267 SS-------LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
            +                +     +        + +   +  +          A   E E
Sbjct: 194 EACVQVVQRGEPLRRTFCLKQTDRSLWLEMAATRLDEGVAVIFRDVTEAREAEAKLRERE 253

Query: 320 NLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
            L     +       ++   G + Y +PS   +  Y   + I                  
Sbjct: 254 QLFRLLAENMTDLVALHDAEGRIVYVSPSAERIVGYTPEELIGHR-------LEEFWHPE 306

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
           +  +   L             ++  +  +     +        ++    +       +  
Sbjct: 307 DRKRLPTLPEQAGEEDHPGVLVYRFRHRQGGYRWLETHVRAIRDETGRLVQLQTSSRDVT 366

Query: 439 DTRINKRKMEIEVMQLCSILEATSDG--IAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
           D    ++ +      L        D   IA  + +  +    RA ++L     E +L   
Sbjct: 367 DRVEAEQALARSNETLQQRNRELQDFAYIASHDLQEPLRKV-RAFAELLKEEYESVLDDE 425

Query: 497 FTVFLEQNTPSVMN------HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII----K 546
              +L++   +           LT        +  E++ L +  E+ L  L + I     
Sbjct: 426 GRYYLDRMQDAAQRMSRLIEDLLTFSRVTTQGRPFERVDLHAILEQVLADLEVRIAETDA 485

Query: 547 KLPFSSCYSLTMHDISEWKQEKNKL 571
           ++     + +   D ++ +Q    L
Sbjct: 486 QVHVEGHWPVVEADPTQMRQLLQNL 510


>gi|322711971|gb|EFZ03544.1| putative histidine kinase HHK6p [Metarhizium anisopliae ARSEF 23]
          Length = 1403

 Score =  322 bits (825), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 100/589 (16%), Positives = 198/589 (33%), Gaps = 58/589 (9%)

Query: 280  LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG 339
            L +  +    G          +        +     D+         D  P   +  S  
Sbjct: 473  LGEAIRDDVTGEFLAAVVTGRDVTVITEQITQIKERDDERFKL--ICDTMPQLVWTASPD 530

Query: 340  NLF-YANPSFLLLTKYKSVDDIE----------IAGGLSTLLDAPKLSDNNAIKPVMLYR 388
             L  + N  +   T     + +                 T       +    +       
Sbjct: 531  GLHDFFNTRWYSYTGLTPEECLGMEWQMPFHPDDRHEALTRWKRSLETGEPFVTEYRCRS 590

Query: 389  SDRTCIAASARLHTIQWNRENSLAMTF------IPFEKANQFPENMPQNGIEPEDVDTRI 442
             +        R   ++     ++   F            +    N    G   +  ++  
Sbjct: 591  KEGEWRWFLGRALAVRNKDSGNIEKWFGKTNCRSLLVGEHGANANHRHTGTCTDVHESIE 650

Query: 443  NKRKMEIEVMQLCSILEATSDGIAIINREGII------LSTNRAVSKLFGYPVEDI---- 492
             K   +    QL S++  +   I  ++    +      L  N     +       I    
Sbjct: 651  TKFDAKRTRQQLLSVIAHSQVTIFTVDTSRRVNMLEGALIWNHTYEDVHDPSRWYIGENM 710

Query: 493  --LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL-EKITLGSTKEEKLLSLRIIIKKLP 549
              +       L +         + +IL     + + +          + L +        
Sbjct: 711  HTVFNRLVDQLPEGEQLDFLQPIEDILEGRTTEDVKQHGLDDRWYRTRFLPMYGKKTHDG 770

Query: 550  FS------SCYSLTMHDISEWKQEKNKLSHAKKI----------AEKESSHKSDFLARVS 593
             +            + D++E +  +  L    +           A++ +  KS FLA +S
Sbjct: 771  KTTSDSTIEGVIGVIMDVTELRDREEALLKQSREKRKAVANEAAAKEANRLKSQFLANMS 830

Query: 594  HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
            HEIRTP+T ++G +E++ +       +    +Y + I  S   +L ++ND+LD SK+ESG
Sbjct: 831  HEIRTPITGVLGMAELLSHMDL----DEEQRDYIDNIQSSATSLLTVINDILDFSKVESG 886

Query: 654  KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR---ILADLRSVKQIALN 710
            ++++     SL   V E + +++     K +  ++   ++I     ++ D   V+QI  N
Sbjct: 887  RLDVEEVQFSLSLVVKEVVRMLRFAVERKNLDFQSDIGSDIENDMVVIGDPGRVRQIITN 946

Query: 711  ILSNAIHFTPSG---GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
            +L+N+I FT  G     +   +  + +  +   V DTG+G+     ++  +PF Q   S 
Sbjct: 947  LLTNSIKFTNQGYVRFSVTTESETSDSINIKFVVEDTGIGIQEDVRKRLFQPFSQGDAST 1006

Query: 768  QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
              R  GTGLGL + K ++D   G+  + ST   GT      P      P
Sbjct: 1007 ARRFGGTGLGLTICKNLLDLMHGRIILESTVDSGTKASFWIPFNKPHGP 1055



 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/103 (10%), Positives = 24/103 (23%), Gaps = 4/103 (3%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI-DPNNHIGDLLKRQNTW 143
             W     G     +       G    + +GM            +        L+    +
Sbjct: 523 LVWTASPDGLHDFFNTRWYSYTGLTPEECLGMEWQMPFHPDDRHEALTRWKRSLETGEPF 582

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRN-REFSGFRGFGIVH 185
             +      EG   +      AL + +++      + G     
Sbjct: 583 VTEYRCRSKEGE--WRWFLGRALAVRNKDSGNIEKWFGKTNCR 623


>gi|149277586|ref|ZP_01883727.1| sensory transduction histidine kinase [Pedobacter sp. BAL39]
 gi|149231819|gb|EDM37197.1| sensory transduction histidine kinase [Pedobacter sp. BAL39]
          Length = 763

 Score =  322 bits (825), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 95/453 (20%), Positives = 182/453 (40%), Gaps = 20/453 (4%)

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
              L+     D+       +  +          L  I     +            N  P 
Sbjct: 172 ERSLNEYYRPDSYLAISAAVENATTHGTPWDLELQAINAAGHSVWIRAIGKAMFKNNIPY 231

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLF 485
            +   G+  +  D + +K  M+     L      T  G    +   G     +    ++F
Sbjct: 232 KLY--GVVQDITDLKNDKNTMKRHEEMLDETQRLTHSGSWESDLLTGR-NYWSTEAFRIF 288

Query: 486 GYPVED--ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           G   +D  I    F   L     ++    + +++                 ++++  +  
Sbjct: 289 GLEPKDEGINTLTFGRMLHHEDRALYQEQIQKVIRSGKAS--NFDLRILLPQQQIRYINA 346

Query: 544 IIKKLPFSSCYSLT----MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
           I K +   +   +     + DI+  K  + +L +AK +AE+ ++ KS+FL+ +SHEIRTP
Sbjct: 347 IAKPVKDENGAVIRLYGAIIDITRRKIAEQELINAKVVAEQAANAKSEFLSTMSHEIRTP 406

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           + A+IGF+ ++             +EY N +  SG  +L ++ND+LD SKI+ GK++   
Sbjct: 407 MNAVIGFTNLLLQNN----PAQEQLEYLNLLKFSGENLLVLINDILDFSKIQEGKISFEM 462

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
              +L E + +        A +K + +  +   +I   I+ D   + QI +N+++N+I F
Sbjct: 463 IGFNLPELLEKIRKTFMQAARDKGLELTLTVDQSIINSIVGDPVRLGQILINLITNSIKF 522

Query: 719 TPSGGQ-IIISTTHTSNEEV--ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T SG   I +   H   E +     + DTG+G+    +      F Q  +    +  GTG
Sbjct: 523 TSSGSVSIDVWKEHEDLEHITICFEIADTGIGIAEDRIADIFDRFTQASSDTNRKYGGTG 582

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           LGL + K +++   G   + S   +G+  +   
Sbjct: 583 LGLSITKQLIELQGGSLSVTSKLNEGSTFQFRL 615


>gi|229528639|ref|ZP_04418029.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae
           12129(1)]
 gi|229332413|gb|EEN97899.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae
           12129(1)]
 gi|327484870|gb|AEA79277.1| Aerobic respiration control sensor protein arcB [Vibrio cholerae
           LMA3894-4]
          Length = 785

 Score =  322 bits (825), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 87/387 (22%), Positives = 165/387 (42%), Gaps = 19/387 (4%)

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
            +E E       + ++      L S ++A+ D I   N +G     NRA+ +L G    +
Sbjct: 135 DLENEVYQREKTQVELAERTALLRSFIDASPDLIYYRNAKGEFSGCNRAMEELTGKRESE 194

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
           ++         +     +     ++ + +   T E+        +    LR +       
Sbjct: 195 LVGLTPWDVYRKEIAQSIVETDQQVFNNNTAITYEQWLEYPDGRKSFFELRKVPFYNKDG 254

Query: 552 S--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                     DI+E K+ +  L       EK S  K+ F++ +SHE+RTPL  I+G S +
Sbjct: 255 RHLGLVGFGRDITERKRHEESL-------EKASRDKTTFISTISHELRTPLNGIVGLSRM 307

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           + +            ++   I+ S   + +I ND++D+ K +  K+ L    ++ +E V+
Sbjct: 308 LLDTPLSG----EQRKHLQTINVSAVTLGNIFNDIIDMDKFDRRKLELFPAALNFEEFVA 363

Query: 670 EAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI-II 727
           E   L  L A +K +        ++P  +  D   ++Q+  N+LSNA+ FT  GG +  +
Sbjct: 364 EIEVLAALMAEQKGLRFDLERLTDLPSLVEVDSTRLRQVLWNLLSNAMKFTKEGGVVMTV 423

Query: 728 STTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGEGTGLGLPLAKAMV 785
           S    +   E+ + V DTG+G+   E EK    + Q+ + +      GTG+GL +++ ++
Sbjct: 424 SAECDAQHAEITIEVEDTGIGIPEAEQEKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLI 483

Query: 786 DANMGKFYIFSTPAKGTLIEIIF--PL 810
               G   + S    G+   +    PL
Sbjct: 484 KLMGGDISVNSEEGFGSTFTVTIRVPL 510



 Score = 45.0 bits (105), Expect = 0.051,   Method: Composition-based stats.
 Identities = 16/128 (12%), Positives = 34/128 (26%), Gaps = 3/128 (2%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           +A G     +  + +  G    +++G+   DV               +   NT       
Sbjct: 172 NAKGEFSGCNRAMEELTGKRESELVGLTPWDVYRKEIAQSIVETDQQVFNNNTAITYE-Q 230

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
           W           +L  +P Y+++    G  GFG               ++  +  +    
Sbjct: 231 WLEYPDGRKSFFELRKVPFYNKDGRHLGLVGFG--RDITERKRHEESLEKASRDKTTFIS 288

Query: 210 IKKGHSSV 217
                   
Sbjct: 289 TISHELRT 296


>gi|257865289|ref|ZP_05644942.1| histidine kinase [Enterococcus casseliflavus EC30]
 gi|257871617|ref|ZP_05651270.1| histidine kinase [Enterococcus casseliflavus EC10]
 gi|257874889|ref|ZP_05654542.1| histidine kinase [Enterococcus casseliflavus EC20]
 gi|257799223|gb|EEV28275.1| histidine kinase [Enterococcus casseliflavus EC30]
 gi|257805781|gb|EEV34603.1| histidine kinase [Enterococcus casseliflavus EC10]
 gi|257809055|gb|EEV37875.1| histidine kinase [Enterococcus casseliflavus EC20]
          Length = 613

 Score =  322 bits (825), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 91/419 (21%), Positives = 181/419 (43%), Gaps = 31/419 (7%)

Query: 396 ASARLHTIQWN-RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
              R   I+    + S  +     ++  Q  E   Q G   E+         ME E  +L
Sbjct: 211 GEMREQAIRIAKGDYSRKVAIHGKDELGQLAETFNQLGERIEETQE-----AMESERNRL 265

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
            S+L   +DG+   +R G +++ N     L     E+ + +     LE +        L 
Sbjct: 266 DSVLSHMTDGVVATDRRGKVITINEMAMSLLNVSNEEAIGQSILTLLEIDEEYT----LR 321

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLS 572
           ++L       LE+ +   T    +L +   + +      S     MHD++E ++ + +  
Sbjct: 322 KLLENPEDMLLERPSNDLTGTNMILRIDFSMIRRESGFISGLVAVMHDVTEQEKNEQE-- 379

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
                       + +F++ VSHE+RTPLT++  + E +    +          +      
Sbjct: 380 ------------RREFVSNVSHELRTPLTSMRSYIEALSEGAW--KDPEIAPNFLKVTLD 425

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA--NEKRILIRTSF 690
             + ++ ++NDLL +S+++SG   L  E ++ +E V+  +    +      K+ LIR  F
Sbjct: 426 ETDRMIRMINDLLSLSRMDSGNSQLQLEYINFNEMVNFVLDRFDMMVTNESKKYLIRREF 485

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
                 +  D   + Q+  NI++NAI ++P GG I +     ++  ++L + D G+G+  
Sbjct: 486 TKRELWVEVDTDKMIQVIDNIMNNAIKYSPDGGIITVKL-METHNNIVLSINDQGLGIPK 544

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            +L K    F ++  ++  +  GTGLGL +++ ++ A+ G  +  S   +G+   I+ P
Sbjct: 545 KDLTKIFDRFYRVDKARARQQGGTGLGLAISREVIKAHGGAIWAESRENRGSTFYIMLP 603


>gi|262199743|ref|YP_003270952.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
 gi|262083090|gb|ACY19059.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
          Length = 906

 Score =  322 bits (825), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 128/811 (15%), Positives = 252/811 (31%), Gaps = 87/811 (10%)

Query: 43  NPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEEL 102
            P H+    +      Q             +F  +P  + VRF                 
Sbjct: 10  PPPHNETVDAAEIHAQQRLALREM---GGGSFAHEPSTQVVRF-------------DPGC 53

Query: 103 PKTIGNYAFKM------IGMRLCDVSDILHID-PNNHIGDLLKRQNT-WYGKTTLWPIEG 154
            + IG     +      +      V      +       D L   +T +     L    G
Sbjct: 54  ARCIGYEPLDLPSSKRPLLWLYRRVVHPEQRESAARAYRDFLAHPDTGFSLALRLRHAAG 113

Query: 155 TNLYVPIDLAALPI-YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH----- 208
              +  + ++A  +    +      R  GI                   +          
Sbjct: 114 H--WALVRISAEAVARDDSGR--ALRVAGICRPLDDSEPASRSEHEAIARMPSPPPTDAV 169

Query: 209 ----EIKKGHSSVEKEKYDIFSQQSPP------PHLRMKNKVSSLTEYYAHKDDVLKTEK 258
               E      ++      +             P  R+ ++  +  E    + D L    
Sbjct: 170 AAVYEALPMGIALFDRGGRVLHCNPSFAGLLGYPLARVTDRKVA--ELVPSRGDRLIHCI 227

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL---QNNSKESFEYLSHRNHPSLSAYF 315
             +L +  +   +  +       +     +F  +      +     +     H       
Sbjct: 228 ARVLDTGAALEEKLGEVDVAPAGERVWNCHFVPVTLSDRRAAVCGAFHDVTEHQRAIVQT 287

Query: 316 DEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
              E     T D   +    V   G     N     LT Y   D++              
Sbjct: 288 QISEERFRGTFDNAAVGIAHVGFDGRWLRFNDRLCTLTGYPR-DELRELTFQDITHPEDL 346

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
            SD    + ++           S     ++ +         +   + +   E      I 
Sbjct: 347 DSDLACYQDLIA----GRIEHYSMEKRYLRRDGTCIWIQLTVSLGRVD--GEASYGISII 400

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
            +    +  + ++ +    + +++E  S+ I +   EG  +  N A+  LFGY  E++L 
Sbjct: 401 EDITHRKRIEERLRVSEEYIRAVVEQASEAIVVAAPEGDFIEVNSAMCALFGYSREELLG 460

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554
           +    F        ++   + +     R  L+       K+   + + +  K L      
Sbjct: 461 RRILEFTADEDKERVSEASSWLRQQAGRVLLD-EWTIERKDGTRVPIEVSAKLLSDGRGA 519

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
              + D+SE K+ +N L             K  ++A + HE+R PL++I    E+++   
Sbjct: 520 -AFIRDVSERKKAENALRV-------AGRQKDIYMAMLGHELRNPLSSIRAAVELLE--- 568

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
            GP  +         + R  + +  +V+ LLD+S++E G++ L  + + +   VS+ +  
Sbjct: 569 LGPTSDVDLQRIHKSLMRQTSHMAKLVDGLLDVSRLELGRITLERQVLDIRGLVSDVLQD 628

Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
             +   E+   + +S A     +  D   + QI  N+L+NA+ FTP  G I ++      
Sbjct: 629 YLVSIKERGQTLHSSIATEALPVSCDPARLSQILDNLLANAMQFTPRDGIITVNLQ-RGK 687

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI--------RGEGTGLGLPLAKAMVD 786
            E +L +RDTG G+    L    +PF Q   S                       K +V+
Sbjct: 688 GEAVLTIRDTGAGIAPDLLPHIFEPFCQATQSIDRTAGGLGLGLAL--------VKTLVE 739

Query: 787 ANMGKFYIFS-TPAKGTLIEIIFPLYDTSHP 816
            + G+    S     G   EI  PL + + P
Sbjct: 740 LHDGRVVARSPGLGAGASFEITLPLSEEATP 770


>gi|161506706|ref|YP_001576656.1| putative histidine kinase [Lactobacillus helveticus DPC 4571]
 gi|160347695|gb|ABX26369.1| putative histidine kinase [Lactobacillus helveticus DPC 4571]
          Length = 618

 Score =  322 bits (825), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 84/408 (20%), Positives = 171/408 (41%), Gaps = 40/408 (9%)

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
           ++  +           ++    +   + E  +L S+L   SDG+   +R G +   N   
Sbjct: 235 DELGQLAKAFNTLSVRIEQSQEES--DSERRRLDSVLSHMSDGVLATDRHGNVSVVNHMA 292

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
                   ++I+ +P    L     S             +    E +          + L
Sbjct: 293 LSYLNADEDEIINRPIAEVLGLKDTSS---------QDLISSQKEIVVTVKPGTRDEIIL 343

Query: 542 RIIIKKLPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
                 +   + +       +HD++E ++ +              + +  F++ VSHE+R
Sbjct: 344 HASFSLIKRVTGFVSGSVCVLHDVTEQQKNE--------------NSQRQFVSNVSHELR 389

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TPLT++  + E +    +         ++     +  + ++ ++NDLL +S+++ G   +
Sbjct: 390 TPLTSLQAYIEALNEGAW--KDPEIAPKFLEVTQQETSRMIRMINDLLSLSRMDRGVSKM 447

Query: 658 HFEPVSLDEAVSEAISLV-------QLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710
             E V+ ++ VS  ++         +   ++K+  I+    N    +  D   + Q+  N
Sbjct: 448 DLEFVNFNDFVSHILNRFDMIVKTDKNKGHKKKYTIKRELGNQALWVEIDTDKMMQVIDN 507

Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           I++NAI ++P GG I +  TH+    VIL + D G+G+   +L K    F ++  ++   
Sbjct: 508 IMNNAIKYSPDGGVITVRLTHS-QGHVILSISDQGLGIPRKDLGKIFDRFYRVDKARSRA 566

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
             GTGLGL +AK +V+A+ G+ +  S+  KG+   I  P Y+T    D
Sbjct: 567 QGGTGLGLAIAKEIVEAHHGRVWADSSEGKGSTFYISLP-YETMTEED 613


>gi|186471157|ref|YP_001862475.1| signal transduction histidine kinase with CheB and CheR activity
            [Burkholderia phymatum STM815]
 gi|184197466|gb|ACC75429.1| signal transduction histidine kinase with CheB and CheR activity
            [Burkholderia phymatum STM815]
          Length = 1361

 Score =  322 bits (825), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 123/732 (16%), Positives = 250/732 (34%), Gaps = 66/732 (9%)

Query: 95   LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEG 154
            +  +S+   + +     +     +  V   L ++    I   L    +   +      EG
Sbjct: 546  IVHLSDRAGRFLQYSGGEPSHNIVAVVRPELRLELRTAIYQALHTNRSVEARRVRIEHEG 605

Query: 155  TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214
             + +  +++ A P++                                             
Sbjct: 606  RSYF--VNMTARPVHDPE-----------------------------------ANADFVL 628

Query: 215  SSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQED 274
               ++ +  +   ++     +    +S L        + L++      TS E      E+
Sbjct: 629  VLFDEVEDSMGGSETSASDAQKDPIISQLERELQRTKEQLQSTIEQSETSTEELKASNEE 688

Query: 275  FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG--ENLTPETVDKCPIP 332
               IN    +  +   T +   +   E L+  N    S   + G   +     +    I 
Sbjct: 689  LQAINEELRSATEELETSKEELQSINEELTTVNAELKSKVEETGKINDDLQNLIAANDIG 748

Query: 333  -FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR 391
              FV  +  +    P    +      D       ++  L+  KL+D+ A     L   +R
Sbjct: 749  TIFVDRNICIKRYTPRATDVFSIIPSDIGRSLLDITHRLEYDKLADDAAEAFDSLRLIER 808

Query: 392  TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV 451
               +   R                                    +    R  + ++    
Sbjct: 809  ELKSNDGR------------WYLARFVPYRTTEDRIDGAVLSFIDITGRRQAEDRLREGE 856

Query: 452  MQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
             ++  + E T D  I   + EG++ S N    ++FGY   +++ +   +   +   +   
Sbjct: 857  RRMRIVAEGTKDYAIITFDDEGLVTSWNAGAERIFGYTEAEMIGQSADMLSTEEDRASNI 916

Query: 511  HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISE----- 563
                E     L    E+      K+        ++ +L  +    ++    D+ E     
Sbjct: 917  AQ-AEFAEARLNGRTEEERWHVRKDGTRFFASGVLSRLDEAGVSGFAKIARDLGEFGHVA 975

Query: 564  -WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
              ++  +  +            + +FLA VSHE++ PL  I   +E +  +      +  
Sbjct: 976  TTERGSHTETLRAAAERDAQRRRDEFLAVVSHELKHPLNLISASAE-LIARAPETRQSLN 1034

Query: 623  YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                A+ I R+      I++DLLDIS++ +GK+++    V + E V    + VQ  A ++
Sbjct: 1035 ISRAADTIRRTVIGQAQIIDDLLDISRVRTGKLSIIRTAVDMREIVQRVCNAVQDDARQR 1094

Query: 683  RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
             + +  + A +   I ADL  V+Q+  N++SNA+ FT  G  + +S     + E +LRV 
Sbjct: 1095 GLTLNVTMAESPVIIHADLTRVEQVVWNLVSNAMKFTNRGS-VDVSLRVNEHGEAVLRVS 1153

Query: 743  DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKG 801
            DTG G+    L    + F Q  +    R  G G+GL L + +V+ + G     S    +G
Sbjct: 1154 DTGKGIEPSLLPHIFEMFEQSRDPVTRRS-GLGIGLALVRELVNLHGGAVRAESEGVGRG 1212

Query: 802  TLIEIIFPLYDT 813
            +   +  P + T
Sbjct: 1213 STFTVTLPTHRT 1224



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/330 (11%), Positives = 78/330 (23%), Gaps = 21/330 (6%)

Query: 90   DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
            D  G +   +    +  G    +MIG     +S       N    +  + +     +   
Sbjct: 875  DDEGLVTSWNAGAERIFGYTEAEMIGQSADMLSTEEDRASNIAQAEFAEARLNGRTEEER 934

Query: 150  WPIEGTNLYVPIDLAALPIYSRNREFSGFRG-------FGIVHVNRVDNDPRALGKRLDK 202
            W +           + +         SGF         FG V      +    L    ++
Sbjct: 935  WHVRKDGTRFF--ASGVLSRLDEAGVSGFAKIARDLGEFGHVATTERGSHTETLRAAAER 992

Query: 203  KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP-- 260
                  +      S E +        S     R      SL    A              
Sbjct: 993  DAQRRRDEFLAVVSHELKHPLNLISASAELIARAPETRQSLNISRAADTIRRTVIGQAQI 1052

Query: 261  ---LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
               LL        +     T    +   ++    +Q+++++    L+     S      +
Sbjct: 1053 IDDLLDISRVRTGKLSIIRTAVDMREIVQRVCNAVQDDARQRGLTLNVTMAESPVIIHAD 1112

Query: 318  GENLTPETVDKCPIPFFVYSHGNL---FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
               +     +         + G++      N     + +          G   +LL    
Sbjct: 1113 LTRVEQVVWNLVSNAMKFTNRGSVDVSLRVNEHGEAVLRVSDT----GKGIEPSLLPHIF 1168

Query: 375  LSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
                 +  PV         +A    L  + 
Sbjct: 1169 EMFEQSRDPVTRRSGLGIGLALVRELVNLH 1198



 Score = 37.7 bits (86), Expect = 7.9,   Method: Composition-based stats.
 Identities = 18/193 (9%), Positives = 50/193 (25%), Gaps = 11/193 (5%)

Query: 279 NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH 338
             N   +      +  +   S   +     P     F  G+          P    V   
Sbjct: 484 RANMAVRGDTPVPVAISGMASARPVVATVQPPGRRRFSFGDLHQRLVEQYAPPSVLVSRD 543

Query: 339 GNLFYANPSFLLLTKYKSVDDIEIAGGL----------STLLDAPKLSDNNAIKPVMLYR 388
             + + +       +Y   +       +          + +  A   + +   + V +  
Sbjct: 544 SEIVHLSDRAGRFLQYSGGEPSHNIVAVVRPELRLELRTAIYQALHTNRSVEARRVRIEH 603

Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
            +      +     +     N+  +  +  E  +    +        +D      +R+++
Sbjct: 604 -EGRSYFVNMTARPVHDPEANADFVLVLFDEVEDSMGGSETSASDAQKDPIISQLERELQ 662

Query: 449 IEVMQLCSILEAT 461
               QL S +E +
Sbjct: 663 RTKEQLQSTIEQS 675


>gi|262275736|ref|ZP_06053545.1| hypothetical protein VHA_002719 [Grimontia hollisae CIP 101886]
 gi|262219544|gb|EEY70860.1| hypothetical protein VHA_002719 [Grimontia hollisae CIP 101886]
          Length = 690

 Score =  322 bits (825), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 103/428 (24%), Positives = 188/428 (43%), Gaps = 20/428 (4%)

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459
           L   +    ++ A   I   +       +  +  E          +++     +     +
Sbjct: 150 LFASRKGGFDTKAQHVIERFRPLIERTIIDIDYRERLQCLVAAKTQELTASRQRFRDFAK 209

Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL 519
              D    I+              L     E +  +P  +  + N    + H L E++ L
Sbjct: 210 TAGDWFWEIDNNLQFTY-------LSSPSNESLSTEPQAIMNQLNRQPEVKHKLLELIHL 262

Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKI 577
           +   +  +  +    +E+ +SL          +   +  T  DI+  K   ++L  A++ 
Sbjct: 263 EQPFSEVEWHVFYGGKEQWISLSGRPYYDKRGNCMGFRGTAKDITGRKHRVHELQQARQQ 322

Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
           AE  ++ KS FLA +SHEIRTPL A++G  + ++      L +   + + + +D+S  L+
Sbjct: 323 AESANAAKSQFLAMMSHEIRTPLNAVMGLLDALQQ----SLLDDEQVAWVSQMDKSAQLL 378

Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR- 696
           L I+ND+ D+S+IES + +LH E V++ ++V+   + ++  ++ K I +    A+N+P  
Sbjct: 379 LTIINDVFDLSRIESERFSLHPELVNIRDSVTIVFNQLRETSSHKAIKLEMDIADNVPDN 438

Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKA 756
           I  D     QI LN++ NA+ FT  G ++ ++ +   N  + + V DTG+G+     +  
Sbjct: 439 IYQDGNRFTQILLNLVGNAVKFTEEG-RVDVAMSAV-NNRLKISVSDTGIGINAERRKDI 496

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
            +PF Q   S   +  GTGLGL + K +V    G     S P  GT   I  PL +    
Sbjct: 497 FQPFTQADGSITRQYGGTGLGLSICKKLVSMMNGSIDFESKPGVGTTFFIDIPLTEPPQS 556

Query: 817 H----DCI 820
                DCI
Sbjct: 557 EQVKTDCI 564



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/259 (8%), Positives = 65/259 (25%), Gaps = 28/259 (10%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNTWY 144
           W ID +     +S        + + + +      + + L+  P     + +L+  +  + 
Sbjct: 216 WEIDNNLQFTYLS--------SPSNESLSTEPQAIMNQLNRQPEVKHKLLELIHLEQPFS 267

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
                W +        I L+  P Y +     GFRG                 ++  ++ 
Sbjct: 268 --EVEWHVFYGGKEQWISLSGRPYYDKRGNCMGFRG--TAKDITGRKHRVHELQQARQQA 323

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
              +  K    ++   +            L     +    +     D+ +        ++
Sbjct: 324 ESANAAKSQFLAMMSHEIRTP--------LNAVMGLLDALQQSLLDDEQVAWVSQMDKSA 375

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
           +       + F    +       +            + ++   +        +   L  +
Sbjct: 376 QLLLTIINDVFDLSRIESERFSLHP-----ELVNIRDSVTIVFNQLRETSSHKAIKLEMD 430

Query: 325 TVDKCPIPFFVYSHGNLFY 343
             D  P   +         
Sbjct: 431 IADNVPDNIY-QDGNRFTQ 448


>gi|228988850|ref|ZP_04148904.1| hypothetical protein bthur0001_54850 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228770878|gb|EEM19389.1| hypothetical protein bthur0001_54850 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 801

 Score =  322 bits (825), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 97/531 (18%), Positives = 201/531 (37%), Gaps = 45/531 (8%)

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVD-----KCPIPFFVYSHGNLFYANPSFLLL 351
            +  E +      +     +   + T E ++                G++  AN ++  +
Sbjct: 294 GQVIEVVGSTVDITERKKVESELSATKELLESFIKHNLDAITISDREGHILQANKAYEKI 353

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411
             + S + I             +   N               +         + +  + L
Sbjct: 354 FGWSSQEIIGKRLPCVPDFLMEESLKNIQN------ILTGESVVTRLETVRQRSDG-SLL 406

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK-------MEIEVMQLCSILEATSDG 464
            ++       +     +  + I  +  + +  +R+       +    M+  +++E  +D 
Sbjct: 407 DISLTVSPILDVRGNVIALSAICRDISERKQAERERHRLHQQLRDSEMKYRALIEQATDA 466

Query: 465 IAI--INREG---IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL 519
           + +  +N +      +  N    + FGY  E++L   F+  + Q++  ++   L +I   
Sbjct: 467 VYVVELNEDNVPSRFIEVNPVGCRRFGYSREELLSLSFSNIVPQDSQMIVK-LLEKIKKG 525

Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579
               TL+   +  T +       + +  L     +     DI+E  + +  L  ++K+A 
Sbjct: 526 QTSFTLQDEYVFPTGKVITTEFSVRVFNLNGKKVFLSISRDITERLKTEELLRKSEKLAV 585

Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639
                       ++HEI  PLTA+ GF +++K+       N     Y N +      +  
Sbjct: 586 V-----GQLATVMAHEINNPLTAMKGFMQLLKSTE-----NENNQGYINIVSSEIERIES 635

Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA 699
           I  + + ++K +  KM  +     +   + + + L+Q  A    I  R      IP +  
Sbjct: 636 ITTEFMAVAKPQVVKMQPN----DISVLMDQVLMLLQPQAMMNNIKFRIDLNPGIPLVSC 691

Query: 700 DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKP 759
           +   +KQ+ +NIL NAI   P GG+I+I      N +V +R  D G G+    +    +P
Sbjct: 692 EGNQLKQVFVNILKNAIESMPMGGEILIQINILDNNQVSIRFIDQGCGIPKERIRYLGEP 751

Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           F        I+ EG GLGL +   +++ + GK +I S   KGT +E+  P+
Sbjct: 752 FY------SIKEEGIGLGLMICYKIIETHQGKVFIESEVNKGTTVEVTLPI 796



 Score =  107 bits (268), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 44/286 (15%), Positives = 90/286 (31%), Gaps = 21/286 (7%)

Query: 313 AYFDEGENLTPETVDKCPIPFF----VYSHGNLFYANPSFLLLTKYKSVDDIEI-AGGLS 367
               + +    +TV +     F    V  H      +  F     + S   +      + 
Sbjct: 186 RELKKSKQELTDTVHELQGGIFKFKKVGKHFIHTLCDGQFYYQNGFYSEQVVGKSLRTID 245

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
             +  P L          L   +   I        + W  + ++ +         +  + 
Sbjct: 246 ASIIPPHLVPQLMKY--YLQAWEGKEITFE-----LPWPNDKTIILI--ALRPIKRNGQV 296

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
           +   G   +  + +  + ++      L S ++   D I I +REG IL  N+A  K+FG+
Sbjct: 297 IEVVGSTVDITERKKVESELSATKELLESFIKHNLDAITISDREGHILQANKAYEKIFGW 356

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
             ++I+ K     +           +  IL           T+    +  LL + + +  
Sbjct: 357 SSQEIIGKRL-PCVPDFLMEESLKNIQNIL-TGESVVTRLETVRQRSDGSLLDISLTVSP 414

Query: 548 LPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
           +               DISE KQ + +     +   ++S  K   L
Sbjct: 415 ILDVRGNVIALSAICRDISERKQAERERHRLHQQL-RDSEMKYRAL 459



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 48/150 (32%), Gaps = 5/150 (3%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG-KTT 148
           D  G++ + ++   K  G  + ++IG RL  V D L  +   +I ++L  ++     +T 
Sbjct: 338 DREGHILQANKAYEKIFGWSSQEIIGKRLPCVPDFLMEESLKNIQNILTGESVVTRLETV 397

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +G+ L + + ++  PI              I               RL ++     
Sbjct: 398 RQRSDGSLLDISLTVS--PILDVRGNVIALS--AICRDISERKQAERERHRLHQQLRDSE 453

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKN 238
              +       +   +          R   
Sbjct: 454 MKYRALIEQATDAVYVVELNEDNVPSRFIE 483



 Score = 40.4 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 49/295 (16%), Positives = 96/295 (32%), Gaps = 49/295 (16%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINR----------EGIILSTNRAVSKLFGYPVEDILR 494
           R+++    +L   +     GI    +          +G     N       G+  E ++ 
Sbjct: 186 RELKKSKQELTDTVHELQGGIFKFKKVGKHFIHTLCDGQFYYQN-------GFYSEQVVG 238

Query: 495 KPFTVFLEQNTPSV-MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553
           K          P   +   +   L     + +         +  +L     IK+      
Sbjct: 239 KSLRTIDASIIPPHLVPQLMKYYLQAWEGKEITFELPWPNDKTIILIALRPIKRNGQVIE 298

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS----HEIRTPLTA------I 603
              +  DI+E K+ +++LS  K++ E    H  D +  +S    H     L A      I
Sbjct: 299 VVGSTVDITERKKVESELSATKELLESFIKHNLDAI-TISDREGH----ILQANKAYEKI 353

Query: 604 IGF-SEVIKNQRFGPLGNPRYIEYANYID-----RSGNLVLDIVND-----LLDISKIES 652
            G+ S+ I  +R   + +    E    I       S    L+ V       LLDIS   S
Sbjct: 354 FGWSSQEIIGKRLPCVPDFLMEESLKNIQNILTGESVVTRLETVRQRSDGSLLDISLTVS 413

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707
             +++    ++L     +     +  A  +R  +     ++  +  A    ++Q 
Sbjct: 414 PILDVRGNVIALSAICRDISE--RKQAERERHRLHQQLRDSEMKYRA---LIEQA 463


>gi|171060781|ref|YP_001793130.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
 gi|170778226|gb|ACB36365.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
          Length = 801

 Score =  322 bits (825), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 97/366 (26%), Positives = 173/366 (47%), Gaps = 16/366 (4%)

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
           L  +L    D + + +    I+  N    ++FGY + ++L +P  + L +   +    +L
Sbjct: 18  LARLLAIADDAVIVADAAQRIVLFNEGAERVFGYRLAEVLGQPLAMLLPEPARAAHAGHL 77

Query: 514 TEILSLDLRQTL---EKITLGSTKEEKLLSLRIII--KKLPFSSCYSLTMHDISEWKQEK 568
                  L        +   G   +  L      I   +L   + ++  + D+SE +Q +
Sbjct: 78  RAFAQSALPARRMAERRDIHGRRADGVLFDAEASISHVELDGQTYFAAILRDVSESRQAR 137

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
             L  AK  AE     KS FLA +SHEIRTPL A+IG + ++ +       +   +++A 
Sbjct: 138 RALERAKAEAEAAERAKSLFLANMSHEIRTPLNAVIGMTTLLMDTPM----SDEQLDFAR 193

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I  SG  +L ++ND+LD SK + GK+ +  +   L   V +A+ LV   A EKR+ +  
Sbjct: 194 TIRASGETLLGVINDILDFSKADVGKLEIEQQRFDLRRCVEDALDLVAPRALEKRLNLAY 253

Query: 689 SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEE-----VILRV 741
              +  P  ++ D+  ++QI  N+LSNA+ FT  G   +II +      +     +   V
Sbjct: 254 LIEDGTPENLVGDVTRIRQILANLLSNAVKFTHQGEVLVIIDSEPVDAGDGPLHRIHFAV 313

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
           +D+G+G+    L +  + F Q+  S   +  GTGLGL ++K + +   G   + S P +G
Sbjct: 314 QDSGIGIAAEHLPRLFQSFTQVDASTTRKYGGTGLGLAISKRLAELMGGTVSVQSEPGQG 373

Query: 802 TLIEII 807
           ++  + 
Sbjct: 374 SVFRVS 379



 Score = 40.8 bits (94), Expect = 0.93,   Method: Composition-based stats.
 Identities = 20/246 (8%), Positives = 55/246 (22%), Gaps = 7/246 (2%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           DA   +   +E   +  G    +++G  L  +        +        +      +   
Sbjct: 33  DAAQRIVLFNEGAERVFGYRLAEVLGQPLAMLLPEPARAAHAGHLRAFAQSALPARRMAE 92

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGF-GIVHVNRVDNDPRALGKRLDKKFSHLH 208
              +         L        + E  G   F  I+         R   +R   +     
Sbjct: 93  -RRDIHGRRADGVLFDAEASISHVELDGQTYFAAILRDVSESRQARRALERAKAEAEAAE 151

Query: 209 EIKKGHSSVEKEKYD-----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
             K    +    +       +    +      M ++            + L      +L 
Sbjct: 152 RAKSLFLANMSHEIRTPLNAVIGMTTLLMDTPMSDEQLDFARTIRASGETLLGVINDILD 211

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
             ++ + + E        +   +     +   + E    L++                  
Sbjct: 212 FSKADVGKLEIEQQRFDLRRCVEDALDLVAPRALEKRLNLAYLIEDGTPENLVGDVTRIR 271

Query: 324 ETVDKC 329
           + +   
Sbjct: 272 QILANL 277


>gi|168699644|ref|ZP_02731921.1| PAS/PAC sensor hybrid histidine kinase [Gemmata obscuriglobus UQM
            2246]
          Length = 1284

 Score =  322 bits (825), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 114/791 (14%), Positives = 240/791 (30%), Gaps = 96/791 (12%)

Query: 98   ISEELPKTIGNYAFKMIGM-RLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTN 156
            +S+   +  G       G   +  +    + D +       +   T       +P+ G +
Sbjct: 377  MSDRAAQIYGVEPGCTHGRESMRGLIHPEYRDRSRDESR--RAAATRTDYDMEYPLLG-D 433

Query: 157  LYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG--- 213
              V +      +Y+ +      +  G+V          A  +  +++   L ++      
Sbjct: 434  CPVWVSARGRGVYAEDGSLV--QMLGVVQDITARKTAEAALRASERRQRFLADLAAATQP 491

Query: 214  -------------------------HSSVEKEKYDIFSQQSPPPHLRMKNKVSSL----- 243
                                     ++ VE E   + +   P     +  +         
Sbjct: 492  LAAPGAVMGVSAKLLAEHLRADRCAYAEVEDESVFVITGDHPVGVPSIVGRWPVAAFGAE 551

Query: 244  -----------------TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTI-----NLN 281
                             T+     DD        +       L +   F           
Sbjct: 552  CVRLMRANEPYVVADVATDPRIGPDDRSAYAATNIGAVICVPLHKHGRFTAAMAVHQRGP 611

Query: 282  QYTKKQYFGTLQNNSKESFEYLSHRN----HPSLSAYFDEGENLTPETVDKCPIPFFVYS 337
            +         +   +   +E L           L        +   E     P    V  
Sbjct: 612  RAWAPAEIELVSTVAGRCWEALERARAVEAERRLHTEVAAERSRLEEVFRLAPAFMAVLR 671

Query: 338  HGNLFY--ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIA 395
                 +  AN  +  L   +    +      + L   P++      + +           
Sbjct: 672  GPEHVFELANDRYSELVGGR---ALVGKTVRAAL---PEIEGQGFFEILDRVYRTGEPYL 725

Query: 396  ASARLHTIQWNRE--NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM------ 447
             S     ++          + F+     +             +  +    + ++      
Sbjct: 726  GSDVRAQVRTADGALTERILDFVYQPIRDAAGAVSGILVQGIDLTERHRAEIELIRVTAE 785

Query: 448  -EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP-FTVFLEQNT 505
             E +     ++L  T D + + +        N A+  ++G    D + K    +  E   
Sbjct: 786  SERQRRLYETVLSNTPDLVYVFDLNHRFTYANEALLAMWGRTRADAIGKSCLEIGYEPWH 845

Query: 506  PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII-KKLPFSSCYSLTMHDISEW 564
             ++ +  + ++ +       E    G+        + + +          + T  D+++ 
Sbjct: 846  AAMHDREIDQVAATRKAVRGEVPFTGTNGRRIYDYIFVPVLGANGEVEAVAGTTRDVTDR 905

Query: 565  KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
            +  + +L             K +F+A ++HE+R PL  I    +VI+          R  
Sbjct: 906  QAMEQELRDV-------DRRKDEFIALLAHELRNPLAPIRNELQVIRLAGTDSAARDRAR 958

Query: 625  EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
                 +DR    ++ IV+DLLD+S+I   KM L    V L E ++ A+   +   +E   
Sbjct: 959  ---AIMDRQLAHMVRIVDDLLDVSRINRNKMELRRARVPLAEVIASAVETARPQIDEAGH 1015

Query: 685  LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744
             +          + ADL  + Q+  N+L+N+  +TP GG++ IS     +E V   VRD 
Sbjct: 1016 ALEVELPPEPVFLNADLTRLAQVFSNLLTNSAKYTPRGGRVRISAAVVGDELVA-AVRDN 1074

Query: 745  GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTL 803
            G+G+    L      F Q+  + +    G G+GL L K + + + G     S     GT 
Sbjct: 1075 GIGVPAAALTTIFDMFSQVNRTTERSTGGLGIGLALVKGLTEMHGGTVTAASAGEGTGTT 1134

Query: 804  IEIIFPLYDTS 814
              +  P+   +
Sbjct: 1135 FTVRLPVAGAA 1145



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 54/567 (9%), Positives = 127/567 (22%), Gaps = 68/567 (11%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH----IDPNNHIGDLLKRQNTWY 144
            D  G +  ++    +  G  A    G  L +V  I++    ++  N     L +     
Sbjct: 237 TDPAGRVTLMNPVAEQLTGWPAAAAAGRPLTEVFRIVNESTRVEVENPALRALAKGVIVG 296

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
                  I       PID +A PI   +   +G     +               RL +  
Sbjct: 297 LANHTILIARGGAEHPIDDSAAPIRGPDGRINGA--ILVFRDITPRKLQEDARNRLAEAL 354

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV---SSLTEYYAHKDDVLKTEKYPL 261
               +     + V     D  +       +            +       +     +   
Sbjct: 355 RLAVDAADLGTWVWDPVTDQLTMSDRAAQIYGVEPGCTHGRESMRGLIHPEYRDRSRDES 414

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
             +  +      ++  +             +        + L      +     +     
Sbjct: 415 RRAAATRTDYDMEYPLLGDCPVWVSARGRGVYAEDGSLVQMLGVVQDITARKTAEAALRA 474

Query: 322 TPETVDKCPI---------------PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
           +                                    A+       + +SV  I     +
Sbjct: 475 SERRQRFLADLAAATQPLAAPGAVMGVSAKLLAEHLRADRCAYAEVEDESVFVITGDHPV 534

Query: 367 S-TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL----------------------HTI 403
               +           + V L R++   + A                            +
Sbjct: 535 GVPSIVGRWPVAAFGAECVRLMRANEPYVVADVATDPRIGPDDRSAYAATNIGAVICVPL 594

Query: 404 QWNRENSLAMTFIPFEKANQFPENM-----------PQNGIEPEDVDTRINKRKMEIEVM 452
             +   + AM           P  +                       R    ++  E  
Sbjct: 595 HKHGRFTAAMAVHQRGPRAWAPAEIELVSTVAGRCWEALERARAVEAERRLHTEVAAERS 654

Query: 453 QLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
           +L  +       +A++   E +    N   S+L G     ++ K     L +        
Sbjct: 655 RLEEVFRLAPAFMAVLRGPEHVFELANDRYSELVG--GRALVGKTVRAALPEIEGQGFFE 712

Query: 512 YLTEILSLDLRQTL-EKITLGSTKEE----KLLSLRIIIKKLPFS--SCYSLTMHDISEW 564
            L  +          +      T +     ++L       +      S   +   D++E 
Sbjct: 713 ILDRVYRTGEPYLGSDVRAQVRTADGALTERILDFVYQPIRDAAGAVSGILVQGIDLTER 772

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLAR 591
            + + +L      +E++       L+ 
Sbjct: 773 HRAEIELIRVTAESERQRRLYETVLSN 799



 Score = 86.2 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/340 (10%), Positives = 82/340 (24%), Gaps = 17/340 (5%)

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
               + +   E      QE    +   +   +      +       E           A 
Sbjct: 28  IWHTHAVHVGEARVAHTQEVLTALGAVRAHIRDLEAAHRTFVLAGEEPPQALRAGEERAL 87

Query: 315 FDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
              GE       D+            +     +     +  +    E             
Sbjct: 88  AALGELTQLTRDDRAQQ----DRIAEITDLFSAASRQLRVAAAARRERGPEAGRSAAEAG 143

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI- 433
            +D  A    +   +D    A    L T +   E + +   +    A           + 
Sbjct: 144 WADRLA---ALARGADEFEGAERDLLRTRRNESERAHSSALLSELAAAAIGLVALGLFVW 200

Query: 434 --EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
                         ++  +   L + L +  DG+   +  G +   N    +L G+P   
Sbjct: 201 LLRRGSRSRARAAAELIEQREWLRTALTSIGDGVIATDPAGRVTLMNPVAEQLTGWPAAA 260

Query: 492 ILRKPFTVFLE---QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
              +P T       ++T   + +     L+  +   L   T+   +      +      +
Sbjct: 261 AAGRPLTEVFRIVNESTRVEVENPALRALAKGVIVGLANHTILIARGGAEHPIDDSAAPI 320

Query: 549 PFSSCY----SLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
                      L   DI+  K +++  +   +        
Sbjct: 321 RGPDGRINGAILVFRDITPRKLQEDARNRLAEALRLAVDA 360



 Score = 58.1 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 40/407 (9%), Positives = 89/407 (21%), Gaps = 60/407 (14%)

Query: 85   FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH--IDPNNHIGDLLKRQNT 142
              +  D +      +E L    G      IG    ++          +  I  +   +  
Sbjct: 803  LVYVFDLNHRFTYANEALLAMWGRTRADAIGKSCLEIGYEPWHAAMHDREIDQVAATRKA 862

Query: 143  WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
              G+    P  GTN     D   +P+   N E     G                 + +D+
Sbjct: 863  VRGEV---PFTGTNGRRIYDYIFVPVLGANGEVEAVAG--TTRDVTDRQAMEQELRDVDR 917

Query: 203  KFSHLHEIKKGHS--------------------SVEKEKYDIFSQQSPPPHLRMKNKVSS 242
            +      +                         S  +++      +     +R+ + +  
Sbjct: 918  RKDEFIALLAHELRNPLAPIRNELQVIRLAGTDSAARDRARAIMDRQLAHMVRIVDDLLD 977

Query: 243  LTEYYAH----KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE 298
            ++    +    +   +   +      E +     E  H + +    +  +         +
Sbjct: 978  VSRINRNKMELRRARVPLAEVIASAVETARPQIDEAGHALEVELPPEPVFLNADLTRLAQ 1037

Query: 299  SF----------EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSF 348
             F               R   S +   DE      +     P              N + 
Sbjct: 1038 VFSNLLTNSAKYTPRGGRVRISAAVVGDELVAAVRDNGIGVPAAALTTIFDMFSQVNRTT 1097

Query: 349  LLLTK-------------------YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389
               T                      +    E  G   T+      + +    P     S
Sbjct: 1098 ERSTGGLGIGLALVKGLTEMHGGTVTAASAGEGTGTTFTVRLPVAGAADERPAPDPAPGS 1157

Query: 390  DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
            D         +     +   S+A          +   +  +     E
Sbjct: 1158 DGPARPCRILVVDDNRDGAESMAEMLGLLGNDVRTAHDGLEAVAAAE 1204


>gi|317479397|ref|ZP_07938531.1| hsp90-like protein [Bacteroides sp. 4_1_36]
 gi|316904471|gb|EFV26291.1| hsp90-like protein [Bacteroides sp. 4_1_36]
          Length = 623

 Score =  322 bits (825), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 112/527 (21%), Positives = 201/527 (38%), Gaps = 38/527 (7%)

Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSV 357
             E     +  S S    E   L        P+   +Y   G L   N     +   K  
Sbjct: 113 IAETQDGPDMSSASQALQERNRLLHNIYKYLPVGIELYNREGILIDMNDKEQEMFHLKQK 172

Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI-----QWNRENSLA 412
           +D+        + + P   +    K   L + +            I        +  ++ 
Sbjct: 173 EDLLGIN----IFENPIFPEEMKSK---LRKHENADFTFRYDFSKIDNYYKTQKKTGTID 225

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA---IIN 469
           +        +          I  +  +T +   K++        I +    G A   ++N
Sbjct: 226 LVTKVTSLYDDNHNLTNYLLINADKTETTVAYNKIQEFESHFELIDDYAKVGYANYDLLN 285

Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPF--TVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
            +G      R+  K  G   E  L +       L  +  ++M  +L  +    L   L +
Sbjct: 286 EQG---YAQRSWYKNLGEKTETPLSEIIGTYNHLHPDDRTIMLDFLQNVKR-GLAHKLSR 341

Query: 528 ITLGSTKEEKLLSLRIIIK-----KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES 582
                 ++   +   + I                  +DI++ K+ +  L  AK+ AE+  
Sbjct: 342 EVRVLKEDGSFMWTHVNIIVERYMPEQNIIEIICINYDITQLKKTEAMLIQAKEKAEEAD 401

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
             KS FLA +SHEIRTPL AIIGFS ++              +Y + I+ +  L+L ++N
Sbjct: 402 RLKSAFLANMSHEIRTPLNAIIGFSSLL----HYVENEQEREQYISLINHNNQLLLKLIN 457

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702
           D+LD+SKIE+G + LH E  +  E + E+I+  +       + +   +     +I  D  
Sbjct: 458 DVLDLSKIEAGHIELHSEWFNPAELIEESITEYERNVPA-GVKLFARYPAAPGQIEHDPM 516

Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
            +KQI  N +SNA+  T  G  I +     ++  + + V DTG G+   +L    + F +
Sbjct: 517 RIKQILNNFISNALKNTVQG-HIEVYYETDTDG-IRISVSDTGCGIPPDKLGMIFERFEK 574

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           + +      +G GLGL + K++V+   G   + ST   G+   +  P
Sbjct: 575 VDSF----AQGAGLGLSICKSIVEKMNGVITVDSTMGVGSTFTVELP 617


>gi|59711903|ref|YP_204679.1| hybrid sensory histidine kinase [Vibrio fischeri ES114]
 gi|59480004|gb|AAW85791.1| hybrid sensory histidine kinase [Vibrio fischeri ES114]
          Length = 692

 Score =  322 bits (825), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 95/378 (25%), Positives = 169/378 (44%), Gaps = 20/378 (5%)

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
           +  +++ +   +     E   D     + +      +             I+ +     +
Sbjct: 191 LKTKELFLSKERFQDFAETVGDWFWETDPQFNFTYLSD-----TKINNTSIISQNLLSLI 245

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLT 557
             +  +        I S        ++          + L +  K           Y  T
Sbjct: 246 SNDFINSTI-----IESEKRLVPFHEVEWNPDIFNNKVWLSLSGKPFFDEFGTFVGYRGT 300

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
             DIS  K+    +  AK  AEK +  KS FLA +SHEIRTPL +I+G  +V        
Sbjct: 301 AKDISARKKRIRDIQTAKTEAEKANKAKSQFLAMMSHEIRTPLNSILGLVDV----FHSS 356

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
           L +   +++ N ++ S  L+L I++D+LDIS+IE+G   L+ +P+ L  +++ +I+ +  
Sbjct: 357 LLSEEQLDWLNQMESSSQLLLTIISDVLDISRIEAGTFVLNEQPIDLLRSLNTSINFLDT 416

Query: 678 YANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
            A +K I +  + + N+P+ + AD   + Q+  N++ NAI FT  G  + +      N  
Sbjct: 417 RAKDKGITLTVTASQNVPKYVFADATRLSQVIFNLVGNAIKFTNHG-HVAVKIEKLPNNS 475

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           + + V DTG+G+ +  LE+  KPF Q  +S   +  GTGLGL + K +V+   G   + S
Sbjct: 476 ISISVSDTGIGIASTTLEQLFKPFVQADSSITRKYGGTGLGLAIIKRLVELMQGTITVES 535

Query: 797 TPAKGTLIEIIFPLYDTS 814
               G+  +I  PL + S
Sbjct: 536 RLNIGSTFKITLPLKEIS 553



 Score = 45.8 bits (107), Expect = 0.031,   Method: Composition-based stats.
 Identities = 16/139 (11%), Positives = 34/139 (24%), Gaps = 11/139 (7%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK 146
           W  D       +S+            +I   L  +     I+      +           
Sbjct: 215 WETDPQFNFTYLSD-----TKINNTSIISQNLLSLISNDFINSTIIESEK----RLVPFH 265

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
              W  +  N  V + L+  P +     F G+RG                 +    +   
Sbjct: 266 EVEWNPDIFNNKVWLSLSGKPFFDEFGTFVGYRG--TAKDISARKKRIRDIQTAKTEAEK 323

Query: 207 LHEIKKGHSSVEKEKYDIF 225
            ++ K    ++   +    
Sbjct: 324 ANKAKSQFLAMMSHEIRTP 342


>gi|186680884|ref|YP_001864080.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186463336|gb|ACC79137.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 1233

 Score =  322 bits (825), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 104/750 (13%), Positives = 237/750 (31%), Gaps = 63/750 (8%)

Query: 90   DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI-LHIDPNNHIGDLLKRQNTWYGKTT 148
            D  G   E++    K  G    +++G  + D +                  Q    G+  
Sbjct: 373  DDEGRYVEVNPAACKLFGVSKEELLGSTIADFAAPEFDFTQA---WQQFYEQGQMLGEFN 429

Query: 149  LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVH-VNRVDNDPRALGKRLDKKFSHL 207
            ++  +GT      + AA+  +  +R  S  R       + R         +  +++    
Sbjct: 430  IYCPDGTVRET--EFAAVANFIPHRHLSILRDVSDRQAMLRARKQTEETLRESEQRLQLA 487

Query: 208  HEIKKGHSSVEKEKYDIFSQQSPPPHL-----RMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
              +    +     + +          L        +             +  +     +L
Sbjct: 488  LSVGNIGTWEWNLRTNQVIWSESLFTLFGLTPDTFDVSYENFLNLIVHPEDRELLHQSVL 547

Query: 263  TSEESSLPEQEDFHTI--NLNQYTKKQYFGTLQNNSKE-SFEYLSHRNHPSLSAYFDEGE 319
             + +  +P   +F  I  +            L +++     + +      +     +   
Sbjct: 548  RAIDQQVPHNLEFRFIYSDGTVGWSVCKGQVLYDDTTNKPLQMIGVNIDITERKQSELEI 607

Query: 320  NLTPETVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
                   D       +     + FY NP+ + L                     P+  D 
Sbjct: 608  RKFVSLADNSTEFIGMCDMNFVPFYLNPAGMQLVGLNDTQQYSETPVREFFF--PEDRDF 665

Query: 379  NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
               +       +     A   +    +    +L M +      +   + +    +     
Sbjct: 666  IINEFFPRVLREGR---AEVEIRFRHFQTGEALWMVYSVSCVKDMNDQLIGLAAVSRNIT 722

Query: 439  DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
            D ++ K+K+  +     ++++  +D I + + E  IL  +    KL+G+  ++ + K   
Sbjct: 723  DRKLAKQKIAEQ----AALIDIATDAIFVRDLENRILFWSPGAEKLYGWTAQESMGKLVH 778

Query: 499  VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----Y 554
                  + S +       L        +     +TK  + + +      +          
Sbjct: 779  ELFNVESLSQLAAGFKTTLEQG---YWQGELEKTTKTGRKIIVASRWTLVQNQFGQSQSI 835

Query: 555  SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                 DI+E KQ + +   A+++            + ++H++      II  +E +   R
Sbjct: 836  LSVNTDITEKKQLEQQFYRAQRL-----ESVGTLASGIAHDLNNVFAPIIMIAE-LLPLR 889

Query: 615  FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
            +  +      E    ++ S     ++V  +L  ++   GK  L    +     + E + +
Sbjct: 890  YKNVDLQTQ-ELFKTLENSSQRGANLVKQILTFTRGTEGKRIL----LQPGHLLQELVKV 944

Query: 675  VQLYANEKRILIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT- 732
            ++     K I I      N +  + AD   ++Q+ +N+  NA    P+ G + I+  +  
Sbjct: 945  IKQTFP-KSIEIVNDIPINTLWMVQADPTQLEQVFMNLAVNARDAMPNDGMLTINAENRM 1003

Query: 733  -------------SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
                         +   +++ V DTG G+    LE+   PF          G+GTGLGL 
Sbjct: 1004 IDETNARMHLDAKAGGYMVVTVSDTGTGIPPEFLERIFDPFFTTK----EVGKGTGLGLS 1059

Query: 780  LAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
                +V  + G   + +   KGT  ++  P
Sbjct: 1060 TVLGIVKNHGGFVEVSTQVGKGTRFQVFLP 1089



 Score = 88.5 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 27/247 (10%), Positives = 66/247 (26%), Gaps = 7/247 (2%)

Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405
                LT      +++     + LL      + ++I  V+  + +   +        ++ 
Sbjct: 248 RKVRRLTVVGEQSELQGLVTQTNLLQVLDPLEIDSIIQVLQAKVEEQTVKLRQCNQQLEQ 307

Query: 406 NRE--NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
             E                          ++ E  + +  +  ++    Q  ++ +   D
Sbjct: 308 EVEQHRQAQQELELRVAERTAELLQANVRLKREIEERKQTEIALQQREHQWKALFDRALD 367

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
            IAI + EG  +  N A  KLFG   E++L      F              +        
Sbjct: 368 AIAIADDEGRYVEVNPAACKLFGVSKEELLGSTIADFAAPEF--DFTQAWQQFYEQGQML 425

Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
                      +  +               +   + D+S+ +         ++   +   
Sbjct: 426 G---EFNIYCPDGTVRETEFAAVANFIPHRHLSILRDVSDRQAMLRARKQTEETLRESEQ 482

Query: 584 HKSDFLA 590
                L+
Sbjct: 483 RLQLALS 489


>gi|16126905|ref|NP_421469.1| sensory box histidine kinase/response regulator [Caulobacter
           crescentus CB15]
 gi|221235688|ref|YP_002518125.1| GAF/PAS-family histidine kinase/receiver protein [Caulobacter
           crescentus NA1000]
 gi|13424253|gb|AAK24637.1| sensory box histidine kinase/response regulator [Caulobacter
           crescentus CB15]
 gi|220964861|gb|ACL96217.1| GAF/PAS-family histidine kinase/receiver protein [Caulobacter
           crescentus NA1000]
          Length = 690

 Score =  322 bits (825), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 100/428 (23%), Positives = 175/428 (40%), Gaps = 16/428 (3%)

Query: 392 TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV 451
              A   R  +     + +                   +     E     + ++ +E   
Sbjct: 133 GTFAIYHREVSKPNKEDIAFIEAAAQLAAFAIDRRRAEEELAASEARARLLAEQALETSR 192

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
             L +  + ++D ++I N +G  +  NRA     GYP+E +   PF   L          
Sbjct: 193 N-LSNFFDVSADLLSISNMQGRFVKVNRAWETALGYPIEALEGVPFLPLLHPEDQQSTRV 251

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571
            +  I   D  +    +      +     L    ++            D++E  + + ++
Sbjct: 252 QINRIEVDD--EVNGFVNRYRRADGSYCQLEWRARRCDD--LVFGVARDVTERLRIQAEM 307

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
           + A+  AE  +  K+DFLA +SHEIRTPL  +I  +  +           +  E    I 
Sbjct: 308 AEARDAAEAANRAKNDFLANMSHEIRTPLNGVIALAAALDETPLTS----KQAEMVAMIR 363

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
           RSG  +  +V+D+LD+SKIE+G+M L  +   L   V   + + +L A EK + +R   +
Sbjct: 364 RSGETLERLVSDILDVSKIEAGQMTLQPQAFDLGALVDGLLDVTRLRAKEKGVAVRLERS 423

Query: 692 NNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-----EVILRVRDTG 745
                  L D   + Q+  N+ SNA+ FT  G ++I+              + + V DTG
Sbjct: 424 PTAAGGFLGDSVRIGQVLSNLFSNAVKFTDQG-EVIVRVDVEEAGNGQAARLFVEVEDTG 482

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           VG    + E   + F Q  ++   R  G+GLGL ++K +V+   G+    S+P  G+L  
Sbjct: 483 VGFDAEKAEMIFQRFNQADSTITRRFGGSGLGLSISKTLVEMMGGEITAQSSPGAGSLFR 542

Query: 806 IIFPLYDT 813
           +  PL  T
Sbjct: 543 VTLPLSRT 550



 Score = 46.6 bits (109), Expect = 0.018,   Method: Composition-based stats.
 Identities = 25/368 (6%), Positives = 77/368 (20%), Gaps = 26/368 (7%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151
            G   +++      +G     + G+    +             + ++  +   G    + 
Sbjct: 211 QGRFVKVNRAWETALGYPIEALEGVPFLPLLHPEDQQSTRVQINRIEVDDEVNGFVNRYR 270

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
               +      L        +        FG+          +A            +  K
Sbjct: 271 RADGSY---CQLEWRARRCDD------LVFGVARDVTERLRIQAEMAEARDAAEAANRAK 321

Query: 212 KGHSSVEKEKYD-----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
               +    +       + +  +      + +K + +        + L+     +L   +
Sbjct: 322 NDFLANMSHEIRTPLNGVIALAAALDETPLTSKQAEMVAMIRRSGETLERLVSDILDVSK 381

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
               +                     +  +KE    +     P+ +  F        + +
Sbjct: 382 IEAGQMTLQPQAFDLGALVDGLLDVTRLRAKEKGVAVRLERSPTAAGGFLGDSVRIGQVL 441

Query: 327 DKC--------PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
                           +         N     L     V+  +   G             
Sbjct: 442 SNLFSNAVKFTDQGEVIVRVDVEEAGNGQAARLF----VEVEDTGVGFDAEKAEMIFQRF 497

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
           N     +  R   + +  S     ++       A +        +    + +  + P+  
Sbjct: 498 NQADSTITRRFGGSGLGLSISKTLVEMMGGEITAQSSPGAGSLFRVTLPLSRTQMGPDAE 557

Query: 439 DTRINKRK 446
                   
Sbjct: 558 IDAPRSAA 565


>gi|315181101|gb|ADT88015.1| sensor histidine kinase FexB [Vibrio furnissii NCTC 11218]
          Length = 781

 Score =  322 bits (825), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 88/404 (21%), Positives = 172/404 (42%), Gaps = 19/404 (4%)

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
               +         +E E       + ++      L S ++A+ D I   N +      N
Sbjct: 122 RIKAEEAREEAMVDLENEVYQREKTQVELAERTALLRSFIDASPDLIYYRNSKCEFSGCN 181

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
           RA+ +L G    D++         +     +     ++   +   T E+        +  
Sbjct: 182 RAMEELTGKRESDLVGLTPWDVYRKEIAQSIVETDQQVFDNNRSLTYEQWLEYPDGRKSY 241

Query: 539 LSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
             LR +                 DI+E K+ +  L       EK S  K+ F++ +SHE+
Sbjct: 242 FELRKVPFYSKDGRHLGLVGFGRDITERKRHEESL-------EKASRDKTTFISTISHEL 294

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTPL  I+G S ++ + +     +P   ++   I+ S   + +I ND++D+ K +  K+ 
Sbjct: 295 RTPLNGIVGLSRMLLDTQL----DPEQRKHMQTINVSAVTLGNIFNDIIDMDKFDRRKLE 350

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNA 715
           L   P++ +E V+E  SL  L A +K +        ++P  +  D   ++Q+  N++SNA
Sbjct: 351 LFPAPLNFEEFVAELESLSALMAEQKGLRFDLERLTDLPALVEVDATRLRQVLWNLISNA 410

Query: 716 IHFTPSGGQI-IISTTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGE 772
           + FT  GG +  +S     +   +++ + DTG+G+   EL+K    + Q+ + +      
Sbjct: 411 MKFTKEGGVVMSVSAEVEGDFANIVMDIEDTGIGIPESELDKIFAMYYQVKSGKDNLHAV 470

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF--PLYDTS 814
           GTG+GL +++ +++   G   + S    G+   +    PL   S
Sbjct: 471 GTGIGLAVSRQLINLMGGDISVSSEEGFGSTFTVTICVPLAHAS 514



 Score = 46.2 bits (108), Expect = 0.021,   Method: Composition-based stats.
 Identities = 30/233 (12%), Positives = 58/233 (24%), Gaps = 20/233 (8%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPIE 153
               +  + +  G     ++G+   DV               +     +   +  L   +
Sbjct: 177 FSGCNRAMEELTGKRESDLVGLTPWDVYRKEIAQSIVETDQQVFDNNRSLTYEQWLEYPD 236

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
           G   Y   +L  +P YS++    G  GFG               ++  +  +        
Sbjct: 237 GRKSYF--ELRKVPFYSKDGRHLGLVGFG--RDITERKRHEESLEKASRDKTTFISTISH 292

Query: 214 HSSVEKEKYDIFSQQSPPPHLRMKNKV--------------SSLTEYYAHKDDVLKTEKY 259
                       S+      L  + +                        K D  K E +
Sbjct: 293 ELRTPLNGIVGLSRMLLDTQLDPEQRKHMQTINVSAVTLGNIFNDIIDMDKFDRRKLELF 352

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
           P   + E  + E E    +   Q   +     L +      E  + R    L 
Sbjct: 353 PAPLNFEEFVAELESLSALMAEQKGLRFDLERLTDL-PALVEVDATRLRQVLW 404


>gi|313636361|gb|EFS02143.1| two-component sensor histidine kinase [Listeria seeligeri FSL
           S4-171]
          Length = 591

 Score =  322 bits (825), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 80/368 (21%), Positives = 173/368 (47%), Gaps = 29/368 (7%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           +++    +L +I++    G+ +IN +  ++ TNR + ++ G    +I  KPF   ++   
Sbjct: 246 EIKQNEQRLNAIVQNLVSGVMLINADKQVIMTNRTMYQILG--ETEITGKPFYEVIKSFA 303

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISE 563
            S +        + + +   +K  +     E +L   +              L +HDI++
Sbjct: 304 LSQLIDA-----TFETKTMQQKEIILYFPREMILDASVSPILAEDGEITGIILLLHDITQ 358

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            +  +N               +S+F+  VSHE++TP+TA+ GF+E + +           
Sbjct: 359 IRHLENV--------------RSEFVTNVSHELKTPVTALKGFAETLLDGAM--YDEALL 402

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            ++   I    + +  ++ D+L +S+IE   +  +   V +D+ + +++  +   A EK 
Sbjct: 403 KKFLTIIKEESDRLHRLIMDILALSRIEQNPVTENVGTVDVDDVIDQSVRTIFELATEKN 462

Query: 684 ILIRTSFANNIPRILA--DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
           I + ++    IP ++   +   ++QI +N+LSNAI++TP  G++ +        EVI+ V
Sbjct: 463 IQV-SAPEKTIPPVIIETNRDQLQQILINLLSNAINYTPVDGKVEVKL-MERESEVIIEV 520

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            D G+G+   ++++  + F ++  ++     GTGLGL + K +V+   G+  + S    G
Sbjct: 521 TDNGIGIPAKDIDRVFERFYRVDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVG 580

Query: 802 TLIEIIFP 809
           +   +  P
Sbjct: 581 STFRVTLP 588


>gi|313631990|gb|EFR99108.1| two-component sensor histidine kinase [Listeria seeligeri FSL
           N1-067]
          Length = 591

 Score =  322 bits (825), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 80/368 (21%), Positives = 173/368 (47%), Gaps = 29/368 (7%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           +++    +L +I++    G+ +IN +  ++ TNR + ++ G    +I  KPF   ++   
Sbjct: 246 EIKQNEQRLNAIVQNLVSGVMLINADKQVIMTNRTMYQILG--ETEITGKPFYEVIKSFA 303

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISE 563
            S +        + + +   +K  +     E +L   +              L +HDI++
Sbjct: 304 LSQLIDA-----TFETKTMQQKEIILYFPREMILDASVSPILAEDGEITGIILLLHDITQ 358

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            +  +N               +S+F+  VSHE++TP+TA+ GF+E + +           
Sbjct: 359 IRHLENV--------------RSEFVTNVSHELKTPVTALKGFAETLLDGAM--YDEALL 402

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            ++   I    + +  ++ D+L +S+IE   +  +   V +D+ + +++  +   A EK 
Sbjct: 403 KKFLTIIKEESDRLHRLIMDILALSRIEQNPVTENVGTVDVDDVIDQSVRTIFELATEKN 462

Query: 684 ILIRTSFANNIPRILA--DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
           I + ++    IP ++   +   ++QI +N+LSNAI++TP  G++ +        EVI+ V
Sbjct: 463 IQV-SAPEKTIPPVIIETNRDQLQQILINLLSNAINYTPVDGKVEVKL-MERESEVIIEV 520

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            D G+G+   ++++  + F ++  ++     GTGLGL + K +V+   G+  + S    G
Sbjct: 521 TDNGIGIPAKDIDRVFERFYRVDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVG 580

Query: 802 TLIEIIFP 809
           +   +  P
Sbjct: 581 STFRVTLP 588


>gi|228921785|ref|ZP_04085101.1| hypothetical protein bthur0011_27810 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228837867|gb|EEM83192.1| hypothetical protein bthur0011_27810 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 801

 Score =  322 bits (825), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 101/532 (18%), Positives = 211/532 (39%), Gaps = 47/532 (8%)

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVD-----KCPIPFFVYSHGNLFYANPSFLLL 351
            +  E +      +     +   + T E ++                G++  AN ++  +
Sbjct: 294 GQVIEVVGSTVDITERKKVESELSATKELLESFIKHNLDAITISDREGHILQANKAYEKI 353

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ-WNRENS 410
             + S + I            P + D    + +   +   T  +   +L T++  +  + 
Sbjct: 354 FGWSSQEIIGKRL--------PCVPDFLMEESLENIQKILTVESVFTKLETVRQRSDGSL 405

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK-------MEIEVMQLCSILEATSD 463
           L ++       +     +  + I  +  + +  +R+       +    M+  +++E  +D
Sbjct: 406 LDVSLTVSPILDVRGNVIALSAICRDISERKQAERERHRLHRQLRDSEMKYRALIEQATD 465

Query: 464 GIAI--INREG---IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
            + +  +N +      +  N    + FGY  E++L   F+  + Q++  ++   L +I  
Sbjct: 466 AVYVVELNEDNAPSRFIEVNPVGCRRFGYSREELLSLSFSNIVPQDSQMIVR-LLEKIKK 524

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578
                TL+   +  T +       + +  L     +     DI+E  + +  L  ++K+A
Sbjct: 525 GQTSFTLQDEYVFPTGKVITTEFSVRVFNLNGKKVFLSISRDITERLKTEELLRKSEKLA 584

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
                        ++HEI  PLTA+ GF +++K+       N     Y N +      + 
Sbjct: 585 VV-----GQLATAMAHEINNPLTAMKGFMQLLKSTE-----NENNQGYINIVSSEIERIE 634

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
            I  + + ++K +  K+  +     +   + + + L+Q  A    I  R      IP I 
Sbjct: 635 SITTEFMAVAKPQVVKIQHN----DISVLMDQVLMLLQPQAMMHNIKFRIDLNPGIPLIS 690

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
            +   +KQ+ +NIL NAI   P GG+I+I      N +V +R  D G G+    +    +
Sbjct: 691 CEGNQLKQVFVNILKNAIESMPMGGEILIQLNILDNNQVSIRFIDEGCGIPKERIPYLGE 750

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           PF        I+ EG GLGL +   +++ + GK +I S   KGT++E+  P+
Sbjct: 751 PFY------SIKEEGIGLGLMICYKIIETHQGKIFIESEMNKGTIVEVTLPI 796



 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 45/286 (15%), Positives = 96/286 (33%), Gaps = 21/286 (7%)

Query: 313 AYFDEGENLTPETVDKCPIPFF----VYSHGNLFYANPSFLLLTKYKSVDDIEI-AGGLS 367
               + +    +TV +     F    V  H      +  F     + S   +      + 
Sbjct: 186 RELKKSKQELADTVHELQGGIFKFKKVDKHFIHTLCDGQFYYQNGFYSEQVVGKSLRTID 245

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
             +  P L          L   +   I        + W  + ++ +         +  + 
Sbjct: 246 ASIVPPHLVPQLMKY--YLQAWEGKEIIFE-----LPWPNDKTIILI--ALRPIKRNGQV 296

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
           +   G   +  + +  + ++      L S ++   D I I +REG IL  N+A  K+FG+
Sbjct: 297 IEVVGSTVDITERKKVESELSATKELLESFIKHNLDAITISDREGHILQANKAYEKIFGW 356

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
             ++I+ K     +           + +IL+++   T +  T+    +  LL + + +  
Sbjct: 357 SSQEIIGKRL-PCVPDFLMEESLENIQKILTVESVFT-KLETVRQRSDGSLLDVSLTVSP 414

Query: 548 LPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
           +               DISE KQ + +     +   ++S  K   L
Sbjct: 415 ILDVRGNVIALSAICRDISERKQAERERHRLHRQL-RDSEMKYRAL 459



 Score = 60.0 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 48/150 (32%), Gaps = 5/150 (3%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG-KTT 148
           D  G++ + ++   K  G  + ++IG RL  V D L  +   +I  +L  ++ +   +T 
Sbjct: 338 DREGHILQANKAYEKIFGWSSQEIIGKRLPCVPDFLMEESLENIQKILTVESVFTKLETV 397

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +G+ L V + ++  PI              I               RL ++     
Sbjct: 398 RQRSDGSLLDVSLTVS--PILDVRGNVIALS--AICRDISERKQAERERHRLHRQLRDSE 453

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKN 238
              +       +   +          R   
Sbjct: 454 MKYRALIEQATDAVYVVELNEDNAPSRFIE 483


>gi|297584464|ref|YP_003700244.1| multi-sensor signal transduction histidine kinase [Bacillus
           selenitireducens MLS10]
 gi|297142921|gb|ADH99678.1| multi-sensor signal transduction histidine kinase [Bacillus
           selenitireducens MLS10]
          Length = 603

 Score =  322 bits (825), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 85/367 (23%), Positives = 156/367 (42%), Gaps = 24/367 (6%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            +  E  QL  IL + +DG+  ++R+G ++ TN   ++  G     +  + +        
Sbjct: 252 ALNQEKEQLSRILSSMADGVITLDRDGGVMVTNPPANEFIG---AWLYEQGYVTEESGQL 308

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
           P  + +   +++S +  Q  E    G       + L   +            M D++E +
Sbjct: 309 PEELQNLFEKVVSEEQEQMGEVDVQGR----SWVILMTPLYDQYHVRGAVAVMRDMTEER 364

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
                              + DF+A VSHE+RTP++ + G+SE I +   G   +    E
Sbjct: 365 LH--------------DKLRKDFIANVSHELRTPISMLQGYSEAIIDDVAG--SDEEKKE 408

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
            A  I      +  +VN+LLD+++IE+G + L+ EPV++ E V       Q  A++  + 
Sbjct: 409 LAQIIYDESLRMGRLVNELLDLARIEAGHIRLNLEPVNMTEFVERISRKFQGVADDNNVE 468

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +      +      D   ++Q+  N++ NAI +T   G + +           L V DTG
Sbjct: 469 LMGEIDQSDTEAYVDPDRIEQVMTNLIDNAIRYTSVNGSVKLRLEELPAGF-RLDVEDTG 527

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
            G+   +L    + F +   ++     GTGLGL + K +V+A+ G+    S   +GT   
Sbjct: 528 AGIPEEDLPFVFERFYKADKARTRGRAGTGLGLAIVKNIVEAHKGRVSAHSRMGEGTTFS 587

Query: 806 IIFPLYD 812
           +  P   
Sbjct: 588 VFLPFSQ 594


>gi|126730008|ref|ZP_01745820.1| cytoplasmic sensor hybrid histidine kinase [Sagittula stellata
           E-37]
 gi|126709388|gb|EBA08442.1| cytoplasmic sensor hybrid histidine kinase [Sagittula stellata
           E-37]
          Length = 841

 Score =  322 bits (825), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 121/589 (20%), Positives = 217/589 (36%), Gaps = 49/589 (8%)

Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
             D L  E+   L +E     +Q++    N  +        + +              H 
Sbjct: 3   LADRLAEERRARLAAERLLELKQKELFEAN-KRLGDHALKLSHEIRETRHEVAEVRSQHK 61

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYSHG--------NLFYANPSFLLLT-KYKSVDDI 360
            +     +         ++          G         L  ANP++L +      +   
Sbjct: 62  RVVQELGQATEKIEVVTEQLWSAMETIRDGFAMFDEERRLELANPAYLSVFEGLDHIAPG 121

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
                +        L D     P          +   AR                   + 
Sbjct: 122 VPYPDILATFAEEGLIDLQGEDP------KGWQLRMLARWEQDPIPNTTLRLWNGRFVKV 175

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
             +   +     +  +  D             ++ S +E   DG  I + E  +L  N+ 
Sbjct: 176 RERHLPDGGIVSLTVDITDLM-----------RMWSAVEELPDGFVIYDAEDRLLMCNQP 224

Query: 481 VSKLF---------GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
               +         G   EDILR                 +L + L+      LE     
Sbjct: 225 YRDYYKASAPAMVPGTTFEDILRYGLKNGQYAEAVGREEEWLEDRLTKHRFAELEHE--Q 282

Query: 532 STKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
              + + L +    ++            DI++ K+++ +L  A   AE  +  KS FLA 
Sbjct: 283 QLDDGRWLRIY---ERETTDGGRVGLRVDITQIKEDQQRLKEATIRAEAANRAKSAFLAN 339

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           +SHEIRTP+  ++G +++++        N     YA+ I  SG  +L I+ND+LD SKIE
Sbjct: 340 MSHEIRTPMNGVVGMADLLRETEL----NDEQKLYADTIRSSGEALLVIINDILDYSKIE 395

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALN 710
           + K+ L+ EP  L+ A+ + + L+Q  A +K I +   +   +P   + D   V+QI  N
Sbjct: 396 AEKLVLNPEPFDLERAIHDVVMLLQPTARDKDITLLVDYDMFLPTHFVGDPGRVRQILTN 455

Query: 711 ILSNAIHFTPSGGQ-IIISTTHTSNEE--VILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
           ++ NA+ FT  G   + +           V + V DTG+G+   ++E     F Q+ + +
Sbjct: 456 LVGNAVKFTVQGYVLVRVVGVMEDGGSTAVHITVEDTGIGIPADKVEHVFGEFNQVEDER 515

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
             + EGTGLGL + + +V+   G+ ++ S P +G+   +   L    HP
Sbjct: 516 NRKFEGTGLGLAITRRLVELMGGEVWVESEPGRGSFFGLRIMLRTDEHP 564


>gi|320162201|ref|YP_004175426.1| putative two-component sensor histidine kinase [Anaerolinea
           thermophila UNI-1]
 gi|319996055|dbj|BAJ64826.1| putative two-component sensor histidine kinase [Anaerolinea
           thermophila UNI-1]
          Length = 641

 Score =  322 bits (825), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 111/626 (17%), Positives = 224/626 (35%), Gaps = 43/626 (6%)

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY 246
                D  +      ++ S           VE +  +          +   +      + 
Sbjct: 56  ISEKMDGESAELETARELSQRFPAAPAVLFVEHDHPEKLKAAMRLGFIEYLSLPLRTDDV 115

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
                  +      +      ++  +    T +L Q   +         +  S   L H 
Sbjct: 116 M-----RVLRHALEIGKLRREAIMLETRRATASLQQRLDELETLARLGRTVVSSLDLDHV 170

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEI-AGG 365
               + A  +         +   P    +Y        N  F+   +    D +      
Sbjct: 171 LSAVVDAAVEMTGAEEGSLLMLDPATGELY-MRAARNFNEDFVRTFRLPVKDTLAGTVIR 229

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
               +     +        ++       +A       +         + F          
Sbjct: 230 TGQPVLLDDSTPQKIKTTYLVQSLLYVPLAVHGHTFGVLGVDNRQHGIPFTEHHLKLLGA 289

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
                       ++      +   E  +L ++L    DG+ +++RE  +L  N+ V + F
Sbjct: 290 LA----EFATIAIENARLYTETITERRKLETVLTNVQDGVVLMDREKRLLLVNQTVRQAF 345

Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
             P   +  + F           +   L  + +   R  ++        + +  ++R+  
Sbjct: 346 SLPENHLTGRSFRDVFSH---PALLELLEGLENGTDRTEVQVE------DGRYFTVRVSP 396

Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
                    +LT  DI+  K+                  KSDF+  VSH++R+PLTAI+G
Sbjct: 397 IP---EVGIALTFSDITSLKKL--------------DQIKSDFVHTVSHDLRSPLTAILG 439

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
           + E+I  +R G + N    ++   I  S + +  +V+DLLD+ +IE+G  +   EPV+LD
Sbjct: 440 YVELI--ERVGTV-NDLQRDFIRRIQVSVHNITSLVDDLLDLGRIEAG-FDTRKEPVALD 495

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725
             +  ++   +    EK   ++       P +LA+   ++Q+  N+L NAI +TP GG+I
Sbjct: 496 AIIRYSVEGFKKALGEKGHTLQLDLPAQAPSLLANPVQMRQMVDNLLDNAIKYTPQGGKI 555

Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
            +S       +++ +V D G+G+   +L      F +  N+      GTGLGL + K++V
Sbjct: 556 QVSLRVE-GNQLLFQVSDNGIGIPPIDLPYVFDKFYRASNA-APDVSGTGLGLAIVKSIV 613

Query: 786 DANMGKFYIFSTPAKGTLIEIIFPLY 811
           +A+ G+ ++ S    G+   ++ PL 
Sbjct: 614 EAHEGRIWVDSAVGTGSTFTVVLPLS 639


>gi|300864747|ref|ZP_07109599.1| Sensor protein (modular protein) [Oscillatoria sp. PCC 6506]
 gi|300337257|emb|CBN54747.1| Sensor protein (modular protein) [Oscillatoria sp. PCC 6506]
          Length = 1008

 Score =  322 bits (825), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 86/395 (21%), Positives = 179/395 (45%), Gaps = 36/395 (9%)

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
              +++  +  L SI++  +DG+ + N  G I   N A++ +F     D+  K       
Sbjct: 389 ATAELQDTMSYLASIIDTIADGLLVTNYNGRITRFNPALTNMFALDRLDLTGKFTEEIFG 448

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL---RIIIKKLPFSSCYSLTMH 559
                ++++  T+    ++      +  G   +   +++        + P      + + 
Sbjct: 449 SEVSKLIDN--TKQPPHEISTVELALQGGRFAKGSAVAILKKSASDSQAPTYIGSVILIR 506

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK-------- 611
           DI+  K+                  K+DF++ VSHE+RTPLT+++GF+++I+        
Sbjct: 507 DITAEKEV--------------DQMKTDFISTVSHELRTPLTSVLGFAKLIQKKLEENVF 552

Query: 612 -----NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
                  +       +  +    I   G  + D++NDLLD++K+E+GK++   +P+ +D+
Sbjct: 553 PIVVTEDKKVQRAVKQVGDNLQIIVSEGQRLTDLINDLLDVAKMEAGKIDWKMQPMKVDD 612

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726
            +  AI+        K +        N+P ++ D   + Q+ +N+LSN+I FT  G    
Sbjct: 613 LIDRAIAATFALFENKGLEPIKDIEENLPELVGDRDKLIQVMINLLSNSIKFTDKG---F 669

Query: 727 ISTTHTS-NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
           ++       +++ + + DTG+G++  +  K  + F Q+  +   + +GTGLGLP+ K ++
Sbjct: 670 VTCQAKKIGDKIKISIIDTGMGISEADQPKVFEKFKQVGETLTDKPKGTGLGLPICKQII 729

Query: 786 DANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820
           + + GK ++ S   KG+    I PL         +
Sbjct: 730 EHHGGKIWVESELGKGSNFSFILPLKPAEEAESSL 764


>gi|265765483|ref|ZP_06093758.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
 gi|263254867|gb|EEZ26301.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
          Length = 919

 Score =  322 bits (825), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 105/644 (16%), Positives = 233/644 (36%), Gaps = 35/644 (5%)

Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS 242
           I    R   D     +   +       +     ++ ++   +           + +++  
Sbjct: 283 ICIELRKAKDEAVRERSFLRNLFRFMPMGYIRMTMVRDAAGLPCDYRIADANDLSSELIG 342

Query: 243 LTEYYA------HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS 296
           ++                K +   LL   E S+ ++ D +     + +    +   ++  
Sbjct: 343 MSLSDYVGCLASELHADFKAKVDYLLDVMEGSVHKETDVYFHRTQRSSHCIVYSPEKDEV 402

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYK 355
              F  L            D  E L        P    +Y   GNL   N   +     K
Sbjct: 403 VALF--LDSTETIRAHRALDRSEKLFKNIFANIPAGVEIYDKDGNLLDLNNWDMETFGVK 460

Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
              D+             ++ +    + ++ +R +    + +        ++ N + +  
Sbjct: 461 DKADVMGVNFFENPNVPLEIRERVRNEDLVDFRLN---YSFNKASDYYHSDKSNIIELYT 517

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA---IINREG 472
              +  +          I  ++ +      ++         I +    G A   ++++ G
Sbjct: 518 KVSKLFDSQGNFNGYVLINIDNTERIDAINRIRDFENFFLLISDYAKVGYAKLNLLSKRG 577

Query: 473 I-ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
             I    + + +    P+  ++       +       +  +  ++L+ + +    ++ + 
Sbjct: 578 YAIKQWFKNMGETEDIPLSSVVG--VYDKMHPEDRQKVFDFYEKVLAGEEKDFRSEMRIL 635

Query: 532 STK---EEKLLSLRIIIKKLPFSSC---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
                 E   + + +++ K              +DI+E K+ +  L  AK+ AE     K
Sbjct: 636 KPGATNEWNWVRMNVVVTKFEPEHGEVEIIGINYDITELKETEAMLIEAKEKAETMDRLK 695

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
           S FLA +SHEIRTPL AI+GFS ++ +            EY   +  + +L+L +++D+L
Sbjct: 696 SAFLANMSHEIRTPLNAIVGFSGLLVDTE----DMEERCEYIKIVQENNDLLLQLISDIL 751

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
           D+SKIE+G     +    ++    + +   Q+   +  + +      +   +++D   + 
Sbjct: 752 DLSKIEAGTFEFTYGETDVNMLCEDIVRSSQIKVPQ-GVELVFDPHPSDCTVISDRNRLH 810

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           Q+  N ++NA+ FT SG  I +         V   V DTG+G++  +L    + F ++ +
Sbjct: 811 QVISNFVNNALKFTSSGS-IHVGYEKKEEG-VEFYVSDTGIGISKEQLTHIFERFVKLNS 868

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
                  GTGLGL + K++V+   G   + S   KG+      P
Sbjct: 869 FIH----GTGLGLSICKSIVEQLGGVIGVDSEEGKGSRFWFTIP 908


>gi|153803102|ref|ZP_01957688.1| sensor histidine kinase FexB [Vibrio cholerae MZO-3]
 gi|124121353|gb|EAY40096.1| sensor histidine kinase FexB [Vibrio cholerae MZO-3]
          Length = 785

 Score =  322 bits (825), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 87/387 (22%), Positives = 165/387 (42%), Gaps = 19/387 (4%)

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
            +E E       + ++      L S ++A+ D I   N +G     NRA+ +L G    +
Sbjct: 135 DLENEVYQREKTQVELAERTALLRSFIDASPDLIYYRNAKGEFSGCNRAMEELTGKRESE 194

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
           ++         +     +     ++ + +   T E+        +    LR +       
Sbjct: 195 LVGLTPWDVYRKEIAQSIVETDQQVFNNNTAITYEQWLEYPDGRKSFFELRKVPFYNKDG 254

Query: 552 S--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                     DI+E K+ +  L       EK S  K+ F++ +SHE+RTPL  I+G S +
Sbjct: 255 RHLGLVGFGRDITERKRHEESL-------EKASRDKTTFISTISHELRTPLNGIVGLSRM 307

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           + +            ++   I+ S   + +I ND++D+ K +  K+ L    ++ +E V+
Sbjct: 308 LLDTPLSG----EQRKHLQTINVSAVTLGNIFNDIIDMDKFDRRKLELFPAALNFEEFVA 363

Query: 670 EAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI-II 727
           E   L  L A +K +        ++P  +  D   ++Q+  N+LSNA+ FT  GG +  +
Sbjct: 364 EIEVLAALMAEQKGLRFDLERLTDLPSLVEVDSTRLRQVLWNLLSNAMKFTKEGGVVMTV 423

Query: 728 STTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGEGTGLGLPLAKAMV 785
           S    +   E+ + V DTG+G+   E EK    + Q+ + +      GTG+GL +++ ++
Sbjct: 424 SAECDAQHAEITIEVEDTGIGIPEAEQEKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLI 483

Query: 786 DANMGKFYIFSTPAKGTLIEIIF--PL 810
               G   + S    G+   +    PL
Sbjct: 484 KLMGGDISVNSEEGFGSTFTVTIRVPL 510



 Score = 45.0 bits (105), Expect = 0.051,   Method: Composition-based stats.
 Identities = 16/128 (12%), Positives = 34/128 (26%), Gaps = 3/128 (2%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           +A G     +  + +  G    +++G+   DV               +   NT       
Sbjct: 172 NAKGEFSGCNRAMEELTGKRESELVGLTPWDVYRKEIAQSIVETDQQVFNNNTAITYE-Q 230

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
           W           +L  +P Y+++    G  GFG               ++  +  +    
Sbjct: 231 WLEYPDGRKSFFELRKVPFYNKDGRHLGLVGFG--RDITERKRHEESLEKASRDKTTFIS 288

Query: 210 IKKGHSSV 217
                   
Sbjct: 289 TISHELRT 296


>gi|162457113|ref|YP_001619480.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
 gi|161167695|emb|CAN99000.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
          Length = 639

 Score =  321 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 99/508 (19%), Positives = 185/508 (36%), Gaps = 29/508 (5%)

Query: 315 FDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
             + +    + +   P+P  V S  G   + NP++      ++ D  E     S L    
Sbjct: 3   QQQEQLWLDDVIGGLPLPVLVLSPAGVATHENPAYRARFGTRADDRHE---IASALRGGH 59

Query: 374 KLSDNNAIKPVMLYRSDRTC--IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
             +   A+  V       +      +     I+        +  +  E+        P  
Sbjct: 60  ASALRAALDGVSRAVPLGSISGAPFTGHYFPIRDASGAVAFVGILFVEERAAPVPAAPAL 119

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
             E  D+               L  IL+     +     +G     NR      G   + 
Sbjct: 120 TSETHDIPEV---------ERSLRRILDMMPQLVWSTRPDGYHDFYNRRWYDYTGETPDA 170

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
                +   L  +            +     +  +        +            +   
Sbjct: 171 THGAGWNDQLHPDDQQRAWERWVRSVETG--EDYQIEYRFRRADGAYRWFLGRAVPMRDD 228

Query: 552 SC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
           +     +  T  D+ + K+ + + +     AE+ S  K +FLA VSHE+RTPLTAI+G++
Sbjct: 229 AGRILRWFGTCTDVDDQKRLEQQRAEVLAQAEETSRLKDEFLAIVSHELRTPLTAILGWA 288

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
                 R          +    I+R+      ++ ++L+ S+I +GK+ L+    S++E 
Sbjct: 289 ------RMQRSRPELAPKAMEVIERNAEAQARLIEEILESSRIVTGKIRLYPRNASVNEL 342

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727
           V  A+  V+  A+ K + +       +  I+ D   ++Q+  N+L NA+ FTP GGQ+ +
Sbjct: 343 VRTAVDAVRPAADAKAVALDVRLDPGVGEIVCDPDRLQQVVTNLLVNAVKFTPGGGQVGL 402

Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
            T       V + V DTG G+++  L    + F Q   +   +  G GLGL + K +V+ 
Sbjct: 403 QTALHPGG-VEVTVTDTGKGISSAFLPHVFERFRQAEAATTRQHGGLGLGLAIVKYLVEL 461

Query: 788 NMGKFYIFS-TPAKGTLIEIIFPLYDTS 814
           + G     S    KG    +  P+   +
Sbjct: 462 HGGAVRAQSDGEGKGASFCVRLPVRAVA 489



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/334 (8%), Positives = 75/334 (22%), Gaps = 10/334 (2%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQNTW 143
             W+    GY    +       G       G    D                 ++    +
Sbjct: 143 LVWSTRPDGYHDFYNRRWYDYTGETPDATHGAGWNDQLHPDDQQRAWERWVRSVETGEDY 202

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +      +G   Y      A+P+          R FG                 +  +
Sbjct: 203 QIEYRFRRADG--AYRWFLGRAVPMRDDAGRI--LRWFGTCTDVDDQKRLEQQRAEVLAQ 258

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
                 +K    ++   +       +     RM+     L        +     +  L+ 
Sbjct: 259 AEETSRLKDEFLAIVSHELRT-PLTAILGWARMQRSRPELAPKAMEVIERNAEAQARLIE 317

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE---GEN 320
               S         +     +  +   T  +  + + +  +      L     E     +
Sbjct: 318 EILESSRIVTGKIRLYPRNASVNELVRTAVDAVRPAADAKAVALDVRLDPGVGEIVCDPD 377

Query: 321 LTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
              + V    +    ++ G       + L       V   +   G+S+            
Sbjct: 378 RLQQVVTNLLVNAVKFTPGGGQVGLQTAL-HPGGVEVTVTDTGKGISSAFLPHVFERFRQ 436

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
            +     +     +  +   + ++ +     A +
Sbjct: 437 AEAATTRQHGGLGLGLAIVKYLVELHGGAVRAQS 470


>gi|167465701|ref|ZP_02330790.1| two-component sensor histidine kinase [Paenibacillus larvae subsp.
           larvae BRL-230010]
 gi|322381731|ref|ZP_08055688.1| two-component sensor histidine kinase-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321154321|gb|EFX46640.1| two-component sensor histidine kinase-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 503

 Score =  321 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 94/521 (18%), Positives = 193/521 (37%), Gaps = 36/521 (6%)

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTK 353
              E  +Y              + + L  ++ D+    F V +  G     N +   +  
Sbjct: 11  EYHEYGKYRGLDQDSRREESHGKLDELFKQSFDQAATGFAVLTPQGKYLIVNQTLCEMLG 70

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS-DRTCIAASARLHTIQWNRENSLA 412
           Y   + +      ++        D+     + L    +            +  +  + L 
Sbjct: 71  YSESELL------TSYFQMFSYPDDLHQDLIYLKEMLEGKRTCYQMEKRCVHKSG-SLLW 123

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG 472
           +        +   +         +    +  ++++  E  +  ++LE   D I  ++  G
Sbjct: 124 VLLSVSVIRDGQGKPQYLVSQMQDITAGKKMEKQLLDEQKRYLALLEYIPDMICFLDYTG 183

Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
            +   N A  KL GY  E++    F  F+       + + L E     +    E      
Sbjct: 184 RLCDVNPAAVKLTGYSEEELTSNFFLRFIVPEEWDRVWNLLEEAKGYRVS---EGEIHIM 240

Query: 533 TKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
            KE   L +      + F        L   D++E K+ +     ++K+            
Sbjct: 241 HKEGHRLIMEARAIPIHFEGQQEGVYLIARDVTERKKTEELFRKSEKLTV-----IGQIA 295

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
           A V+HEIR PLT + GF +          G     EY   +    N +  I+ ++L ++K
Sbjct: 296 AGVAHEIRNPLTTLKGFIQ------LFHAGEEGKQEYYEVMMGELNRIELIITEMLVLAK 349

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709
                   HF+P  +D+ +   + L+   A  K I I  +   ++  +L +   +KQ+ +
Sbjct: 350 PHMS----HFQPRHIDKIIQNVLILLDTEAKHKNIRIVVAGEADLAPVLCEENQLKQLFI 405

Query: 710 NILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
           ++L NA+     GG+I+I       + + +R+ D G G+   ++ K  +PF         
Sbjct: 406 HLLKNAVESMEHGGKILIQIRGHGKDRICVRITDQGCGIAPEQMHKLGEPFYTT------ 459

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           + +GTGLG+ ++  +++ + G   I S   +GT + +  P+
Sbjct: 460 KEKGTGLGMMISYKIIEDHQGTMEIESKMGEGTTVSVYLPI 500



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/254 (9%), Positives = 62/254 (24%), Gaps = 18/254 (7%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNT-WYGKTT 148
             G    +++ L + +G    +++       S    +  +   + ++L+ + T +  +  
Sbjct: 54  PQGKYLIVNQTLCEMLGYSESELLTSYFQMFSYPDDLHQDLIYLKEMLEGKRTCYQMEKR 113

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                G+   + + L+   I     +         +                 K++  L 
Sbjct: 114 CVHKSGSL--LWVLLSVSVIRDGQGKPQYL--VSQMQDITAGKKMEKQLLDEQKRYLALL 169

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT--------EYYAHKDDVLKTEKYP 260
           E              +         L   ++    +             +   L  E   
Sbjct: 170 EYIPDMICFLDYTGRLCDVNPAAVKLTGYSEEELTSNFFLRFIVPEEWDRVWNLLEEAKG 229

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
              SE       ++ H + +       +F   Q                     F + E 
Sbjct: 230 YRVSEGEIHIMHKEGHRLIMEARAIPIHFEGQQE--GVYLIARDVTERKKTEELFRKSEK 287

Query: 321 LTPETVDKCPIPFF 334
           LT   + +      
Sbjct: 288 LT--VIGQIAAGVA 299



 Score = 47.3 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/115 (14%), Positives = 38/115 (33%), Gaps = 5/115 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D  G L +++    K  G    ++              D   ++ +  K      G+  
Sbjct: 179 LDYTGRLCDVNPAAVKLTGYSEEELTSNFFLRFIVPEEWDRVWNLLEEAKGYRVSEGEIH 238

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
           +   EG    + ++  A+PI+    +  G   + I            L ++ +K 
Sbjct: 239 IMHKEGH--RLIMEARAIPIH-FEGQQEGV--YLIARDVTERKKTEELFRKSEKL 288


>gi|322391843|ref|ZP_08065308.1| sensor histidine kinase VicK [Streptococcus peroris ATCC 700780]
 gi|321145323|gb|EFX40719.1| sensor histidine kinase VicK [Streptococcus peroris ATCC 700780]
          Length = 449

 Score =  321 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 91/376 (24%), Positives = 167/376 (44%), Gaps = 33/376 (8%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           R+ +  +E E  +L SIL   +DG+   NR G I   N       G   +++L K     
Sbjct: 83  RLTQENLEQESKRLHSILSYMTDGVLATNRRGQITMINDMAKNQLGIESDEVLNKNILEL 142

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SL 556
           L+      +   +         Q+ + +        + +SLR+    +   S +      
Sbjct: 143 LKIEDEYELKDLI--------TQSPDLMIYSQNLNGEYISLRVRFALVRRESGFISGLVA 194

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            +HD +E ++E+ +                 F++ VSHE+RTPLT++  + E +     G
Sbjct: 195 VLHDTTEQEKEERERRL--------------FVSNVSHELRTPLTSVKSYLEAL---DEG 237

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV- 675
            L  P   ++        N ++ +V DLL +S+I++   NL  E ++    ++  ++   
Sbjct: 238 ALSEPVAPDFIKVSLDETNRMMRMVTDLLHLSRIDNATSNLDVELINFTAFITFILNRFD 297

Query: 676 --QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
             +    EK+  I   +  N   +  D   + Q+  NIL+NAI ++P GG+I +S   T 
Sbjct: 298 KIRAQDEEKKYEIVRDYPINSVWVEIDTDKMTQVIDNILNNAIKYSPDGGKITVSMKTTD 357

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
           ++ + L + D G+G+   +L K    F ++  ++     GTGLGL +AK +V  + G  +
Sbjct: 358 DQMI-LSISDQGLGIPKEDLPKIFDRFYRVDKARSRAQGGTGLGLAIAKEIVKQHNGFIW 416

Query: 794 IFSTPAKGTLIEIIFP 809
             S   KG+   I+ P
Sbjct: 417 AKSEYGKGSTFTIVLP 432


>gi|303245626|ref|ZP_07331909.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           fructosovorans JJ]
 gi|302492889|gb|EFL52754.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           fructosovorans JJ]
          Length = 871

 Score =  321 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 119/775 (15%), Positives = 246/775 (31%), Gaps = 77/775 (9%)

Query: 75  VFDPIPRTVRF------TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID 128
            FDP    V         + +D       I+    +  G    +++   + D  D     
Sbjct: 117 TFDPGRLAVAVECAFAAVFVVDRDFRFLYINRAFERWYGRRRRELLSRPMADCMDAEAFA 176

Query: 129 PNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNR 188
                   +  +     +     ++G        L  LP+   +          +     
Sbjct: 177 RFRATALEVFDRGAMREEEVRRTVDGRERNFQTTL--LPLVGEDGVVDAV--CCLFTEIT 232

Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL--RMKNKVSSLTEY 246
                +       +++  + E +         +            +  R    +      
Sbjct: 233 SHRRAQRELDASRRRYQAIVEDQTELVVRLDARLRRVFVNRAVARIAGRPVEDMLGSLFL 292

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
               +     E+   LT     +  +      + +Q         + + +    EY +  
Sbjct: 293 EDVPEGEGLRERILALTPRAPVVDVRHMLTLPDGHQRCLNWTVRAIFDEAGRVGEYQAMG 352

Query: 307 NHP----SLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIE 361
                   +       E    +  +      F +   G +   NP+   +  + S +++ 
Sbjct: 353 RDVTAYWRMERELIRSEAKYRDIFEHSAEGIFQFDPDGAMAACNPALARILGFASPEEVL 412

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
           +  G   L    +    + ++ + L                +      ++ ++       
Sbjct: 413 LEQG--DLFSRIQARQQDRLEFLRLLAQHGRVFDFEM---QVVRRDGRAVWVSINARAVL 467

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
           ++        G   +  D +      E E M L S ++ +++G+ I++R+  +   N A 
Sbjct: 468 DESGRLQRVEGAARDITDRKRA----EEERMLLVSAVDQSAEGLVIVSRDFRLEYANPAF 523

Query: 482 SKLFGYPVED---ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
           +++ G         L +   +FL ++        + ++L L LR +       S  EE +
Sbjct: 524 AQIVGGQGGAGGLDLERHLGIFLGES--------VRKMLGLGLRWSGRLRLPRSDGEEGV 575

Query: 539 LSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
               I   +        + + + D++     + +L   +K+              V+H+ 
Sbjct: 576 AETLISPVRDAAGQITNHIMLVRDMTYEMGLEKRLRQVEKL-----EAIGVLAGGVAHDF 630

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
              LT I+  +E+I      P  +P   +    + R+     D+V  LL  S+    +  
Sbjct: 631 NNILTPILLNTEMILADI--PWKDP-LRKPLADVVRASERARDLVRQLLTFSR----QGE 683

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716
           L   P+ L+  V E + L +    EKR+ IR   +     I AD   + Q+ +N+  NA 
Sbjct: 684 LTVGPLPLNPLVKETLKLARGMI-EKRVEIRQRVSELALTIEADPAQIHQVLMNLCLNAA 742

Query: 717 HFTPSGGQIIIS---------------------TTHTSNEEVILRVRDTGVGMTNYELEK 755
              P GG + +                      T         L V DTG GMT    ++
Sbjct: 743 QAMPEGGVLEVGLLAIPEPPRPLGPCLAAGTPLTELPPGPYAKLWVSDTGHGMTADICDR 802

Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             +PF          G+GTG+GL     +V    G   + S   +G+L E+ FPL
Sbjct: 803 IFEPFFTTKKP----GQGTGMGLAAVHGIVKGCGGAVLVTSAVGRGSLFEVFFPL 853



 Score =  128 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 42/419 (10%), Positives = 119/419 (28%), Gaps = 29/419 (6%)

Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP---HLRMKNKVSSLTEYYAH 249
             A+G     + +   E       V    +               R +  +S        
Sbjct: 112 SPAVGTFDPGRLAVAVECAFAAVFVVDRDFRFLYINRAFERWYGRRRRELLSRPMADCMD 171

Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY----LSH 305
            +   +     L   +  ++ E+E   T++  +   +     L                 
Sbjct: 172 AEAFARFRATALEVFDRGAMREEEVRRTVDGRERNFQTTLLPLVGEDGVVDAVCCLFTEI 231

Query: 306 RNHPSLSAYFDEGENLTPETV-DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364
            +H       D         V D+  +   + +     + N +   +      D +    
Sbjct: 232 TSHRRAQRELDASRRRYQAIVEDQTELVVRLDARLRRVFVNRAVARIAGRPVEDMLG--- 288

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
              +L            + ++        +      H +     +   + +      ++ 
Sbjct: 289 ---SLFLEDVPEGEGLRERILALTPRAPVVDVR---HMLTLPDGHQRCLNWTVRAIFDEA 342

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
                   +  +       +R++     +   I E +++GI   + +G + + N A++++
Sbjct: 343 GRVGEYQAMGRDVTAYWRMERELIRSEAKYRDIFEHSAEGIFQFDPDGAMAACNPALARI 402

Query: 485 FGY--PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
            G+  P E +L +       Q        +L  +      +  +       ++ + + + 
Sbjct: 403 LGFASPEEVLLEQGDLFSRIQARQQDRLEFLRLLAQHG--RVFDFEMQVVRRDGRAVWVS 460

Query: 543 IIIKKLPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
           I  + +   S           DI++ K+ + +    + +        ++ L  VS + R
Sbjct: 461 INARAVLDESGRLQRVEGAARDITDRKRAEEE----RMLLVSAVDQSAEGLVIVSRDFR 515


>gi|188584128|ref|YP_001927573.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium populi BJ001]
 gi|179347626|gb|ACB83038.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium populi BJ001]
          Length = 857

 Score =  321 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 113/679 (16%), Positives = 226/679 (33%), Gaps = 32/679 (4%)

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH--- 206
               GT   + +   A        +  G R    +     +       +   ++      
Sbjct: 183 LRERGTGFRMNLRSLAGRFIEAQGQAVGGRALLRLRETTEERRELIELRHRLEEAKRGLS 242

Query: 207 ----LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
               L +              +    +            +   +     D    ++    
Sbjct: 243 ALAGLLDALPQPVWHRDTAGALAFVNTAYAAAVEAPNREAALSHGLELLDRSARDQIARQ 302

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
           T     + +      +            +    +      +      S+ A      +  
Sbjct: 303 TGRPGLVAQPLRLSAVVAGARRTLDVSESTL-ETGRVGIAVDVSELESVRADLQRQMDAN 361

Query: 323 PETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
             T+D+ P    ++     L + N ++  L        +E       +LD  + +     
Sbjct: 362 VRTLDQLPTAVAMFDARQRLIFHNAAYQRLWDL-DPAFLEGRPLDGEILDRLRAARKLPE 420

Query: 382 KPVMLYRSDRTCIAASARL---HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
           +            A  A                  T       N             E +
Sbjct: 421 QADFRSWKTDVLAAYRAVEPTDTPWYLPDGR----TLRVVADPNPQGGLTYLYHDVSESM 476

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
                   +  E  +    LEA  + +A+   +G +   NRA +  +      +  KP  
Sbjct: 477 KLASRYDALMKEQAE---TLEALKEPVAVFGADGRLTVANRAFAATWRLDPATLAGKPHV 533

Query: 499 VFLEQNTPSVMNHY-----LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553
             +     ++         + + ++                +  +L        L  +  
Sbjct: 534 DAVIAACRALTPDQSPWAGIRQSITGLSETRSGHACRLDINDGTVLDCSSQPLPLGAT-- 591

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
             LT  D++     +  L+      E+ S  +  F+  VS+E+R+PLT IIGF++++ ++
Sbjct: 592 -LLTFIDVTASANVERALTEKNDALERASQLRDTFVHHVSYELRSPLTNIIGFTQLLGDE 650

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
             G L N R  EY+ +I RS   +L I+ND+LD++ I++G + L  E + +   V  A+ 
Sbjct: 651 TVGAL-NERQREYSEHIMRSSAALLVIINDILDLASIDAGSLELQRETIDVRATVDAAVR 709

Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
            ++    E  I +       +  + AD + V+QI  N+LSNA+ F+  G Q+ +      
Sbjct: 710 GIEDRLAESDIRLDLDVPEGVGSVFADGKRVRQILFNLLSNAVGFSEPGQQVRVE-ARRE 768

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
             E+ L V D G G+    +++    F    N+   +  G GLGL + ++ V+ + G+  
Sbjct: 769 GAELRLTVIDRGRGIAPEVIDRVFDRFE--SNTLGTKHRGVGLGLSIVRSFVELHGGRVE 826

Query: 794 IFSTPAKGTLIEIIFPLYD 812
           I S P  GT +  +FP+  
Sbjct: 827 IHSAPGTGTRVTCLFPVEP 845



 Score = 87.4 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 55/463 (11%), Positives = 127/463 (27%), Gaps = 37/463 (7%)

Query: 137 LKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRAL 196
           L+ +  W  K      E T+L    D A + ++S  +    + G        +     A 
Sbjct: 67  LRERVGWMRKERALQDELTDLRGAHDRAEMLLHSERQVLVAWAG----RGEPMIVGDPAF 122

Query: 197 GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256
            + L  +     +++       +        Q P    R    + +   + A +D  L  
Sbjct: 123 AQDLRNQDLRNPDLRNQELRGYEA-----WGQDPQGAPRGSRHLLTFGTWLAAQDAQLLE 177

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY-F 315
                L    +              +   +   G      +E+ E               
Sbjct: 178 AAVATLRERGTGFRMNLRSLAGRFIEAQGQAVGGRALLRLRETTEERRELIELRHRLEEA 237

Query: 316 DEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
             G +     +D  P P +     G L + N ++           +E     + L    +
Sbjct: 238 KRGLSALAGLLDALPQPVWHRDTAGALAFVNTAYA--------AAVEAPNREAALSHGLE 289

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
           L D +A   +         +A   RL  +      +L ++        +      + GI 
Sbjct: 290 LLDRSARDQIARQTGRPGLVAQPLRLSAVVAGARRTLDVS--------ESTLETGRVGIA 341

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
            +  +    +  ++ ++      L+     +A+ +    ++  N A  +L+      +  
Sbjct: 342 VDVSELESVRADLQRQMDANVRTLDQLPTAVAMFDARQRLIFHNAAYQRLWDLDPAFLEG 401

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK-------ITLGSTKEEKLLSLRIIIKK 547
           +P    +     +                 L          T     + + L +      
Sbjct: 402 RPLDGEILDRLRAARKLPEQADFRSWKTDVLAAYRAVEPTDTPWYLPDGRTLRVVADPNP 461

Query: 548 LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
                  +   HD+SE  +  ++     K   +      + +A
Sbjct: 462 ---QGGLTYLYHDVSESMKLASRYDALMKEQAETLEALKEPVA 501



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/390 (9%), Positives = 94/390 (24%), Gaps = 36/390 (9%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNT-WY 144
            W+ D  G L  ++      +     +       ++     +D +       +       
Sbjct: 255 VWHRDTAGALAFVNTAYAAAVEAPNREAALSHGLEL-----LDRSARDQIARQTGRPGLV 309

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            +              +D++   +             GI          RA  +R     
Sbjct: 310 AQPLRLSAVVAGARRTLDVSESTL--ETGRV------GIAVDVSELESVRADLQRQMDAN 361

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
               +      ++   +  +    +     R+ +   +  E      ++L   +      
Sbjct: 362 VRTLDQLPTAVAMFDARQRLIFHNAAYQ--RLWDLDPAFLEGRPLDGEILDRLRAARKLP 419

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS-------------- 310
           E++     +    +       +            +   ++  N                 
Sbjct: 420 EQADFRSWKT--DVLAAYRAVEPTDTPWYLPDGRTLRVVADPNPQGGLTYLYHDVSESMK 477

Query: 311 LSAYFDEGENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
           L++ +D       ET++    P  V+ + G L  AN +F    +      +     +  +
Sbjct: 478 LASRYDALMKEQAETLEALKEPVAVFGADGRLTVANRAFAATWRL-DPATLAGKPHVDAV 536

Query: 370 LDAPKLSDNNAIKPVMLYRS-DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
           + A +    +      + +S        S     +  N    L  +  P          +
Sbjct: 537 IAACRALTPDQSPWAGIRQSITGLSETRSGHACRLDINDGTVLDCSSQPLPLGATLLTFI 596

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458
                   +         +E    QL    
Sbjct: 597 DVTASANVERALTEKNDALE-RASQLRDTF 625


>gi|260427268|ref|ZP_05781247.1| cytoplasmic sensor hybrid histidine kinase [Citreicella sp. SE45]
 gi|260421760|gb|EEX15011.1| cytoplasmic sensor hybrid histidine kinase [Citreicella sp. SE45]
          Length = 861

 Score =  321 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 124/587 (21%), Positives = 224/587 (38%), Gaps = 39/587 (6%)

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
               ++   +     LL  +++ L         +    + + +    + +   +      
Sbjct: 5   ARLAEERRARLAAERLLELKQAELFAANRKLNKHARALSNEIHSTRAEISEVRTENRRVK 64

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDIEIAG 364
                     +  E    + +      F  +S   +   ANP++L    ++ +D I    
Sbjct: 65  SELGEAHVKIEMVEGQLWKALQSMRDGFATFSAERMMELANPAYLA--PFEGLDTIGPGA 122

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
               +L+         ++              +AR        E     T    +  ++ 
Sbjct: 123 SYRHVLEMMVEEGIVDLQGEPRRSWHER---MTARWDMDPIPSETLRLWTGQFIKMQDRH 179

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
             +     +  +             E+M++ S LE   DG  I + E  +L  N     +
Sbjct: 180 LPDGGVVSLCVDIT-----------ELMRMWSALEELPDGFVIYDAEDRMLMCNEPYRAI 228

Query: 485 F---------GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
           +         G   EDILR                 +L E LS     + E        +
Sbjct: 229 YKASAPAIVPGASFEDILRYGLERGQYAAAVGREEDWLEERLSAHRHASHEME--QQLGD 286

Query: 536 EKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
            + L +     +            DI++ K  + +L  A+  AE  S  KS FLA +SHE
Sbjct: 287 GRWLRIYERPLR---DGGRVGLRIDITDVKDTQRELEEARIRAETASRAKSSFLANMSHE 343

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           IRTP+  ++G +E+++              Y + I  SG  +L I+ND+LD SKIE+ K+
Sbjct: 344 IRTPMNGVVGMAELLRESPL----TDEQRLYVDTIRGSGEALLVIINDILDYSKIEADKL 399

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSN 714
            L  E   L+ AV E + L+Q  A EK + +   +   +P+ ++ D   V+QI  N++ N
Sbjct: 400 KLSAESFDLERAVHEVLLLLQPTAREKGLEMLAEYDMFLPQRVVGDPGRVRQILTNLVGN 459

Query: 715 AIHFTPSGGQIIISTTHTSNE---EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           A+ FT  G  ++            +V + V DTGVG+   ++E     F Q  + +    
Sbjct: 460 AVKFTNEGHVLVRVLGLRHAHGALDVRITVEDTGVGVPADKIEHIFGEFNQAEDDRNRPF 519

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
           EGTGLGL + K +V+   G+ ++ S P +G+   +  PL   +   +
Sbjct: 520 EGTGLGLAITKRLVEMMEGEIWVKSEPGQGSCFGLRIPLAVAAPSEE 566


>gi|253698911|ref|YP_003020100.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21]
 gi|251773761|gb|ACT16342.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21]
          Length = 1108

 Score =  321 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 100/655 (15%), Positives = 208/655 (31%), Gaps = 50/655 (7%)

Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP---PPHLRMKNK 239
           I  + R  N      +R    +  L E                             ++ +
Sbjct: 341 IGQMARTFNKMLLEQERSRDFYLTLFENFPALVWRAGTDGKCDYFNQTWLEFTGRTLEEE 400

Query: 240 VSSLTEYYAHKDDVLK-TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE 298
                    H +++   +  Y            +      +                  E
Sbjct: 401 QGDGWLQGVHPEELDFCSRTYRDAVENRRPFQMEYRLRHRSGGYRWITDMGRPFYGLDGE 460

Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSV 357
              Y+      +      +        +++ P    +    G + Y NP  +  T Y+ V
Sbjct: 461 FAGYIGTCYDVTERQEAADKILKLSRVIEQSPNAVLIATLDGTIEYVNPKTVEATGYE-V 519

Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD-RTCIAASARLHTIQWNRENSLAMTFI 416
            ++  +     L    +L+   A++ ++    + R  I A       +            
Sbjct: 520 AELVGSDMKRLLPHEAQLNFKLALRELVRRGKEWRGEIPA-------RRKDGAVFWEQVT 572

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIIL 475
                    +      I+ +    R  +  ++    +   + E     +   + +    L
Sbjct: 573 LSPIKTMEGKATHLVCIKEDITQRRQFELSLKESEERYRLLFENNPHPMWAYDLKALSFL 632

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
           + N A  + +GY +++ L             +     L  +   + R     +     K+
Sbjct: 633 AVNNAALRHYGYSMQEFLEMKLNDL-----SAKTAEGLELLPQGETRPGGAPLKRHVKKD 687

Query: 536 EKLLSLRII--IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES--SHKSDFLAR 591
             ++ +  I  + K        + +HD++E  + + +    +    +             
Sbjct: 688 GSVILVETISQVMKFAGVDAEIVMVHDVTEKLRAEQEKLALEHQLTQSQKMEAIGTLTGG 747

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           ++H+    LTAIIG++ ++  +        R       I R+      +   LL  S+ +
Sbjct: 748 IAHDFNNILTAIIGYTTMLHLELDEAHPLQRK---VGEILRASERAASLTRSLLAYSRRQ 804

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
           +G    +  P  L+  V+    L+Q    E  I +++  A     I+AD   ++Q+ +N+
Sbjct: 805 AG----NPAPTGLNAIVNNVDILLQRLIPE-NIELKSQLAPEELSIMADSGQIEQVIMNL 859

Query: 712 LSNAIHFTPSGGQIIISTTH--------------TSNEEVILRVRDTGVGMTNYELEKAM 757
           + NA    P GG + +ST                      +L V D+GVGM     ++  
Sbjct: 860 VVNARDAMPEGGVLSLSTESMTLDREFVAKHGYGRPGSYALLSVADSGVGMDERTRDRIF 919

Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
           +PF          G+GTGLGL +   +V  + G    +S P  GT+  I  P  D
Sbjct: 920 EPFFTTKAP----GKGTGLGLAMVYGIVKQHGGFINCYSEPGHGTVFRIYLPRID 970



 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 45/429 (10%), Positives = 108/429 (25%), Gaps = 34/429 (7%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID-PNNHIGDLLKRQNTW 143
             W     G     ++   +  G    +  G           +D  +    D ++ +  +
Sbjct: 372 LVWRAGTDGKCDYFNQTWLEFTGRTLEEEQGDGWLQGVHPEELDFCSRTYRDAVENRRPF 431

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +  L    G   Y  I     P Y  + EF+G+   G  +      +      +L + 
Sbjct: 432 QMEYRLRHRSGG--YRWITDMGRPFYGLDGEFAGY--IGTCYDVTERQEAADKILKLSRV 487

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
                      +     +Y          +   +   S +     H+  +        L 
Sbjct: 488 IEQSPNAVLIATLDGTIEYVNPKTVEATGYEVAELVGSDMKRLLPHEAQLNFKLALRELV 547

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL----SHRNHPSLSAYFDEGE 319
                   +      +   + ++     ++    ++   +                 E E
Sbjct: 548 RRGKEWRGEIPARRKDGAVFWEQVTLSPIKTMEGKATHLVCIKEDITQRRQFELSLKESE 607

Query: 320 NLTPETVDKCPIPFFVYSHGNLFY--ANPSFLLLTKYKSVDDIE---------IAGGLST 368
                  +  P P + Y    L +   N + L    Y   + +E          A GL  
Sbjct: 608 ERYRLLFENNPHPMWAYDLKALSFLAVNNAALRHYGYSMQEFLEMKLNDLSAKTAEGLEL 667

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
           L           +K     + D + I        +++   ++  +      +  +  +  
Sbjct: 668 LPQGETRPGGAPLK--RHVKKDGSVILVETISQVMKFAGVDAEIVMVHDVTEKLRAEQEK 725

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQ-----LCSILEATSDGIAIINRE-------GIILS 476
                +            +   +       L +I+  T+     ++         G IL 
Sbjct: 726 LALEHQLTQSQKMEAIGTLTGGIAHDFNNILTAIIGYTTMLHLELDEAHPLQRKVGEILR 785

Query: 477 TNRAVSKLF 485
            +   + L 
Sbjct: 786 ASERAASLT 794


>gi|228953435|ref|ZP_04115480.1| hypothetical protein bthur0006_28140 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228806174|gb|EEM52748.1| hypothetical protein bthur0006_28140 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 801

 Score =  321 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 101/532 (18%), Positives = 210/532 (39%), Gaps = 47/532 (8%)

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVD-----KCPIPFFVYSHGNLFYANPSFLLL 351
            +  E +      +     +   + T E ++                G++  AN ++  +
Sbjct: 294 GQVIEVVGSTVDITERKKVESELSATKELLESFIKHNLDAITISDREGHILQANKAYEKI 353

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ-WNRENS 410
             + S + I            P + D    + +   +   T  +   RL T++  +  + 
Sbjct: 354 FGWSSQEIIGKRL--------PCVPDFLMEESLKNIQKILTGESVVTRLETVRQRSDGSL 405

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK-------MEIEVMQLCSILEATSD 463
           L ++       +     +  + I  +  + +  +R+       +    M+  +++E  +D
Sbjct: 406 LDVSLTVSPILDVRGNVIALSAICRDISERKQAERERHRLHQQLRDSEMKYRALIEQATD 465

Query: 464 GIAII-----NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
            + ++     N     +  N    + FGY  E++L   F+  + Q++  ++   L +I  
Sbjct: 466 AVYVVELNEENAPSRFIEVNPVGCRRFGYSREELLSLSFSNIVPQDSQMIVR-LLEKIKK 524

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578
                TL+   L  T +       + +  L     +     DI+E  + +  L  ++K+A
Sbjct: 525 GQTSFTLQDEYLFPTGKVITTEFSVRVFNLNGKKVFLSISRDITERLKTEELLRKSEKLA 584

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
                        ++HEI  PLTA+ GF +++K+       +     Y N +      + 
Sbjct: 585 VV-----GQLATVMAHEINNPLTAMKGFMQLLKSTE-----SENNQGYINIVSSEIERIE 634

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
            I  + + ++K +  KM  +    ++   + + + L+Q  A    I I+      IP I 
Sbjct: 635 SITTEFMAVAKPQVVKMQPN----NISVLMDQVLMLLQPQAMMNNIKIKIDLNPGIPLIS 690

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
            +   +KQ+ +NIL NAI   P GG+I+I      N ++ +R  D G G+    +    +
Sbjct: 691 CEGNQLKQVFVNILKNAIESMPMGGEILIQLNILDNNQLSIRFIDQGCGIPKERIPYLGE 750

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           PF        I+ EG GLGL +   +++ + G  +I S   KGT +E+  P+
Sbjct: 751 PFY------SIKEEGIGLGLMICYKIIETHQGNVFIESEVNKGTTVEVTLPI 796



 Score =  108 bits (269), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 44/286 (15%), Positives = 91/286 (31%), Gaps = 21/286 (7%)

Query: 313 AYFDEGENLTPETVDKCPIPFF----VYSHGNLFYANPSFLLLTKYKSVDDIEI-AGGLS 367
               + +    +TV +     F    V  H      +  F     + S   +      + 
Sbjct: 186 RELKKSKQELADTVHELQGGIFKFKKVGKHFIHTLCDGQFYYQNGFYSEQVVGKSLRTID 245

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
             +  P L          L   +   I        + W  + ++ +         +  + 
Sbjct: 246 ASIVPPHLVPQLMKY--YLQAWEGKEIIFE-----LPWPNDKTIILI--ALRPIKRNGQV 296

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
           +   G   +  + +  + ++      L S ++   D I I +REG IL  N+A  K+FG+
Sbjct: 297 IEVVGSTVDITERKKVESELSATKELLESFIKHNLDAITISDREGHILQANKAYEKIFGW 356

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
             ++I+ K     +           + +IL           T+    +  LL + + +  
Sbjct: 357 SSQEIIGKRL-PCVPDFLMEESLKNIQKIL-TGESVVTRLETVRQRSDGSLLDVSLTVSP 414

Query: 548 LPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
           +               DISE KQ + +     +   ++S  K   L
Sbjct: 415 ILDVRGNVIALSAICRDISERKQAERERHRLHQQL-RDSEMKYRAL 459



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 37/286 (12%), Positives = 83/286 (29%), Gaps = 23/286 (8%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG-KTT 148
           D  G++ + ++   K  G  + ++IG RL  V D L  +   +I  +L  ++     +T 
Sbjct: 338 DREGHILQANKAYEKIFGWSSQEIIGKRLPCVPDFLMEESLKNIQKILTGESVVTRLETV 397

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +G+ L V + ++  PI              I               RL ++     
Sbjct: 398 RQRSDGSLLDVSLTVS--PILDVRGNVIALS--AICRDISERKQAERERHRLHQQLRDSE 453

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLR--------------MKNKVSSLTEY-YAHKDDV 253
              +       +   +          R               + ++ SL+      +D  
Sbjct: 454 MKYRALIEQATDAVYVVELNEENAPSRFIEVNPVGCRRFGYSREELLSLSFSNIVPQDSQ 513

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
           +       +   ++S   Q+++        T +               +LS     +   
Sbjct: 514 MIVRLLEKIKKGQTSFTLQDEYLFPTGKVITTEFSVRVFN--LNGKKVFLSISRDITERL 571

Query: 314 YFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVD 358
             +E    + +      +     +   N   A   F+ L K    +
Sbjct: 572 KTEELLRKSEKLAVVGQLATVMAHEINNPLTAMKGFMQLLKSTESE 617


>gi|298530356|ref|ZP_07017758.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509730|gb|EFI33634.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 784

 Score =  321 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 115/561 (20%), Positives = 216/561 (38%), Gaps = 61/561 (10%)

Query: 293 QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV---------YSHGNLFY 343
             +S E        +  SL       +++    +   P    +              +  
Sbjct: 5   NASSSERRCPEKSHDEQSLILQLKNLQHVYHRLLMHMPDGCALLSRQPGSGKEEEFFIQE 64

Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403
            NP+F  +T   +  ++     L  L       +          ++              
Sbjct: 65  VNPAFEDMTG-AAGQELMGRSTLQAL------PELATRLNRACMQAMGGTQPVDF----- 112

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
               ++ L+     FE            G+  E       +  +     +  +I + T D
Sbjct: 113 ----QHFLSSQAKYFEVRVFAVGENICMGVFSEVTGRMHFQEALRESREKYRTIADFTYD 168

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKP--FTVFLEQNTPSVMNHYLTEILSLDL 521
               ++ +G  L  + +  ++ GY  E+    P  F   +  +   ++N   +    L  
Sbjct: 169 WEYWLSPQGEFLYISPSCKRVTGYTPEEFKYDPDLFRRIIHPDDLPLLNCLKSCDHELQQ 228

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKN-------- 569
               E      T++ + + +      +   +        +  DI++ K  +N        
Sbjct: 229 ESHSETDFRIRTRDGREVWISHSCTPVFSETGEYLGRRGSNRDITDRKVAENRLQEFAVE 288

Query: 570 ------KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
                 +L+ A+  A++ S  KS FLA +SHEIRTP+ AI+GF++V++     P   PR 
Sbjct: 289 VETQNLELARARNRAQEASKAKSTFLANMSHEIRTPMNAILGFAQVLEQD---PDLTPRQ 345

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
             +   I RSGN +L ++ND+LD+SKIE+G++    E   L + + +   +    A  K 
Sbjct: 346 AGHLKTITRSGNHLLRLINDILDMSKIEAGQVQSSPEDFGLVDMLEDMGLMFSSRAEAKG 405

Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQI-IISTTHTSNE------ 735
           +        ++P  I AD   ++QI +N+L NA+ FT SGG    + T    +       
Sbjct: 406 LQFILERDRHLPGNIRADQGMLRQIMVNLLGNAVKFTSSGGVACRVRTEPAQDTGEKDDS 465

Query: 736 --EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
              + + V D+G G+   + +K  +PF Q       +  GTGLGL ++++      G   
Sbjct: 466 RLRLTIEVEDSGPGIQEIDQQKLFEPFQQAEEGI--KEGGTGLGLAISRSFARLMGGDIE 523

Query: 794 IFSTPAKGTLIEIIFPLYDTS 814
           + ST  +G+L  +   L +TS
Sbjct: 524 VSSTKDRGSLFRVHI-LVETS 543



 Score = 48.5 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 53/498 (10%), Positives = 112/498 (22%), Gaps = 49/498 (9%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKM--IGMRLCDVSDILHIDPNNHIG---DLLKRQNTW 143
           +   G    IS    +  G    +          +     +   N +      L++++  
Sbjct: 173 LSPQGEFLYISPSCKRVTGYTPEEFKYDPDLFRRIIHPDDLPLLNCLKSCDHELQQESHS 232

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL--- 200
                +   +G    V I  +  P++S   E+ G RG                 +     
Sbjct: 233 ETDFRIRTRDGR--EVWISHSCTPVFSETGEYLGRRGSN--RDITDRKVAENRLQEFAVE 288

Query: 201 -DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
            + +   L   +       K K    +  S        N +    +      D+   +  
Sbjct: 289 VETQNLELARARNRAQEASKAKSTFLANMSHE-IRTPMNAILGFAQVLEQDPDLTPRQAG 347

Query: 260 PLLTSEE------SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
            L T           + +  D   I   Q         L +  ++     S R       
Sbjct: 348 HLKTITRSGNHLLRLINDILDMSKIEAGQVQSSPEDFGLVDMLEDMGLMFSSRAEAKGLQ 407

Query: 314 YFDEGENLTPETVDK---CPIPFFVYSHGNLFYANPS---FLLLTKYKSVDDIEIAGGLS 367
           +  E +   P  +           V   GN      S      +    + D  E      
Sbjct: 408 FILERDRHLPGNIRADQGMLRQIMVNLLGNAVKFTSSGGVACRVRTEPAQDTGEKDDSRL 467

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
            L    + S     +       +    A               L +            + 
Sbjct: 468 RLTIEVEDSGPGIQEIDQQKLFEPFQQAEEGI-----KEGGTGLGLAISRSFARLMGGDI 522

Query: 428 -------MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG-----IAIINREGIIL 475
                            V+T     + E +  +   I++    G     I I++      
Sbjct: 523 EVSSTKDRGSLFRVHILVETSTGPPRTEKKPER---IIQGLQPGTGPVRILIVDDRLDNR 579

Query: 476 STNRAVSKLFGYPVEDI-LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
           S  +A+ +  G+               +   P  +   +   +         +   G   
Sbjct: 580 SLLQAILEPMGFETRQAENGAHCLEIFQDWPPHAVLMDMRMPVMDGYEAV--ERVRGLPG 637

Query: 535 EEKLLSLRIIIKKLPFSS 552
                 + +         
Sbjct: 638 GRDCFIMAVTASAFEEDR 655


>gi|182415113|ref|YP_001820179.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
 gi|177842327|gb|ACB76579.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
          Length = 745

 Score =  321 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 112/621 (18%), Positives = 211/621 (33%), Gaps = 31/621 (4%)

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
               ++   + +       F+   P               + A    V+    +   TS 
Sbjct: 6   AAALVRGAVAPLLDPDALQFAFFFPAIACAAWYGRLPAAIFAAVLSGVVAAIAFVAPTSA 65

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
              L  ++                     +          R    +     E E      
Sbjct: 66  PLPLTARDWMGVFAFLAAAAPVIGAIELMHRANDRARAELRRRLQVDDTSRESEERFRTV 125

Query: 326 VDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
            D  P+  +V+   G   + N +F      K+ +     G     L  P  +   A + +
Sbjct: 126 ADGLPLVVWVHDADGRQQFVNRTFCEFFGVKAEEM---NGARWRELLHPDDAARYATEFL 182

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
              R DR   AA  R   ++ +             + +   E     G   +  D + ++
Sbjct: 183 ACVR-DRRPFAAEVR---VRRHDGQWRWCESWARPRWSASGEFCGFVGASADITDRKRSE 238

Query: 445 RKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
             +     +L   L     G+       G +   +  + +LFG        +     +  
Sbjct: 239 AALAESQQRLQLALAGAETGVWSWEVATGRV-HWSPELYRLFGISEFSGTVEAARQLVHP 297

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMH 559
              + ++H +T+ L       +E   +    +     +    +    ++         + 
Sbjct: 298 EDLARVSHAITDALEKREPYAVEFRIV--RPDGSTHWMSDRGRADYDANGRPGRLLGVIT 355

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           D++  K+ + +L  A+  A   S  K  FLA +SHE+RTPLT  +  +         PL 
Sbjct: 356 DVTARKRVEAELEAARDQALAASRAKDRFLAMLSHELRTPLTPALMIA---AEFECSPLV 412

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
                +    +  S  L   +++DLLD+S++  GK++L F        + +A+  VQ   
Sbjct: 413 PAALHDDLAVVRASIELEARLIDDLLDVSRVTRGKLHLQFARCEGHAVLRQAVETVQPEF 472

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
             K I +      +   +  D   ++Q+  NIL NA  FTPSGG I + +         L
Sbjct: 473 VTKHITLGWELDPSDAPLWGDSVRLQQVFWNILRNAAKFTPSGGSIRLRSQVAD-GTWRL 531

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-----GEGTGLGLPLAKAMVDANMGKFYI 794
            V DTG+G+   +LE+  + F Q     + R        T     ++ ++V  + GK + 
Sbjct: 532 EVIDTGIGIAPDDLERIFESFYQSGQGAEPRLGGLGLGLT-----ISSSIVRDHGGKIWA 586

Query: 795 FST-PAKGTLIEIIFPLYDTS 814
            S    +G+ + I  PL   S
Sbjct: 587 ESAGLDRGSTVIIELPLQPGS 607



 Score = 94.3 bits (233), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 25/266 (9%), Positives = 64/266 (24%), Gaps = 10/266 (3%)

Query: 64  NTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD 123
           +    +SE  F        +   W  DA G  + ++    +  G  A +M G R  ++  
Sbjct: 112 DDTSRESEERFRTVADGLPL-VVWVHDADGRQQFVNRTFCEFFGVKAEEMNGARWRELLH 170

Query: 124 ILHIDPNN-HIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFG 182
                         ++ +  +  +  +   +G   +   +  A P +S + EF GF   G
Sbjct: 171 PDDAARYATEFLACVRDRRPFAAEVRVRRHDG--QWRWCESWARPRWSASGEFCGF--VG 226

Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS----PPPHLRMKN 238
                       A      ++        +      +                       
Sbjct: 227 ASADITDRKRSEAALAESQQRLQLALAGAETGVWSWEVATGRVHWSPELYRLFGISEFSG 286

Query: 239 KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE 298
            V +  +    +D    +        +      +      + + +          + +  
Sbjct: 287 TVEAARQLVHPEDLARVSHAITDALEKREPYAVEFRIVRPDGSTHWMSDRGRADYDANGR 346

Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPE 324
               L      +     +       +
Sbjct: 347 PGRLLGVITDVTARKRVEAELEAARD 372


>gi|227364326|ref|ZP_03848419.1| PAS/PAC sensor signal transduction histidine kinase [Lactobacillus
           reuteri MM2-3]
 gi|325683525|ref|ZP_08163041.1| sensor histidine kinase VicK [Lactobacillus reuteri MM4-1A]
 gi|227070639|gb|EEI08969.1| PAS/PAC sensor signal transduction histidine kinase [Lactobacillus
           reuteri MM2-3]
 gi|324977875|gb|EGC14826.1| sensor histidine kinase VicK [Lactobacillus reuteri MM4-1A]
          Length = 598

 Score =  321 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 83/426 (19%), Positives = 170/426 (39%), Gaps = 44/426 (10%)

Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI-EVMQLC 455
             R  T++  R       +    K     E     G            ++    E  +L 
Sbjct: 188 EMRKQTLRIARG-----DYSGQVKVLGNDELGQLAGAVNNLSVRVEEAQESSDSERRRLD 242

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYP-VEDILRKPFTVFLEQNTPSVMNHYLT 514
           SIL   SDG+   +R G +   N    +L G    +D++ K     L+      +   + 
Sbjct: 243 SILSHMSDGVLATDRRGNVTIVNNMALQLLGVENEDDLIGKSIIDVLDIRHDYTVRQLVN 302

Query: 515 EILSLDLRQTLEKITLGSTKE-EKLLSLRIIIKKLPFSSCYS----LTMHDISEWKQEKN 569
                      ++  +         L L      +   S +       +HD++  ++E+ 
Sbjct: 303 G---------EQREMIIDMSNSGNNLILNAYFSPIQRESGFVSGLVCVLHDVTSQQKEER 353

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +              +  F++ VSHE+RTPLT++  + E + +  +         ++   
Sbjct: 354 E--------------RKQFVSNVSHELRTPLTSVRSYVEALSDGAWQ--DKEIAPQFLKV 397

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI----- 684
           +    + ++ ++NDLL +S++++G   L+ E V+++E  +  +    +   ++       
Sbjct: 398 VQDETDRMIRMINDLLSLSRMDAGTTKLNLEYVNINELFNYILDRFDMIIKKEEDPKKKK 457

Query: 685 -LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
             I   F      +  D     Q+  NI++NAI ++P GG I       ++  VIL + D
Sbjct: 458 YTIERYFTKKDLWVEIDTDKFTQVIDNIMNNAIKYSPDGGVITTRL-LETHNHVILSISD 516

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
            G+G+   +L +    F ++  ++  +  GTGLGL ++K +++   G+ ++ S   KG+ 
Sbjct: 517 QGLGIPRKDLGRIFDRFFRVDKARSRKQGGTGLGLAISKEVINMLGGQIWVDSVEGKGST 576

Query: 804 IEIIFP 809
             I  P
Sbjct: 577 FYISLP 582


>gi|237726370|ref|ZP_04556851.1| two-component system sensor histidine kinase [Bacteroides sp. D4]
 gi|265751928|ref|ZP_06087721.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_33FAA]
 gi|229434896|gb|EEO44973.1| two-component system sensor histidine kinase [Bacteroides dorei
           5_1_36/D4]
 gi|263236720|gb|EEZ22190.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_33FAA]
          Length = 781

 Score =  321 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 105/513 (20%), Positives = 203/513 (39%), Gaps = 24/513 (4%)

Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDI 360
            L      S      +   +    +DK        S  G L YAN  F+     K     
Sbjct: 142 VLIMCRDISERVATQQNLEIFKRVLDKVSDSILAVSVDGTLVYANRQFIEEYGVKEELGT 201

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
           +    L   L+  ++ D    +     R +    A  A+   +    E  L +  +    
Sbjct: 202 QKVYDLPVSLNTKEIFDKRVQEI----RDNGGNFAYRAKYTRV---GETKLRVHQVSAFM 254

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR--EGIILSTN 478
                E M       +  D   N+ ++      + +IL      + + +   +   L  N
Sbjct: 255 IQNQGEEMIWFFT-QDITDVIKNRDELRELNYLMDAILNNIPVYLFVKDPEDDFRYLYWN 313

Query: 479 RAVSKLFGYPVEDILRK-PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
           +A +     P    L    F VF E       +    E++    R  +++  + +T E +
Sbjct: 314 KAFASHSKIPASKALGHIDFEVFPEHENAEKFHRDDLELIRTRERMEMQETYVTATGETR 373

Query: 538 LLSLRIIIKKLPFSSC-YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
           ++     +  L   +        DI+  +  + +L  A+  AE+    K+ FLA +SHEI
Sbjct: 374 IVQTLKTLVPLEGRAPLIIGISWDITNMQNIEQELVQARIKAEQSDRLKTAFLANMSHEI 433

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTPL AI+GFS ++         + +   Y++ I+++  ++L ++ND+LD++KIE+G + 
Sbjct: 434 RTPLNAIVGFSRLM--TMADNAADEKL--YSDIINQNSEILLQLINDILDLAKIEAGTLE 489

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716
               P+ L E       + +       +++     +    I  D   + Q+  N+++NAI
Sbjct: 490 YVRYPMDLGELCRNVYEMHKDRVQT-GVVLILDNKDTSLIINEDQNRIMQVVTNLITNAI 548

Query: 717 HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
            FT  G +I           +   V+DTG+G++  +++   + F ++        +GTGL
Sbjct: 549 KFTFKG-EIRFGFEVRKE-YIDFYVKDTGMGISEEKIKMIFERFVKLNTF----VQGTGL 602

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GL + + +V+   G+    S   +G+      P
Sbjct: 603 GLAICRVIVEKLGGEITAESKLNEGSTFRFTIP 635



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 41/127 (32%), Gaps = 5/127 (3%)

Query: 457 ILEATSDGIAIINREGI-ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           IL++  D + + N E   I   +   +   G    D         + +     +++ L +
Sbjct: 48  ILDSLPDMLTVFNHEETGIEVVSNEETNHVGVSNNDFKGMRMQDMVPKEAYHNIHNNLQK 107

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575
            ++     T          +  L      I  L       +   DISE    +  L   K
Sbjct: 108 AIATGRGSTAHHEL---DVDGTLHYYENRIFPL-DEEYVLIMCRDISERVATQQNLEIFK 163

Query: 576 KIAEKES 582
           ++ +K S
Sbjct: 164 RVLDKVS 170


>gi|229080291|ref|ZP_04212816.1| hypothetical protein bcere0023_29380 [Bacillus cereus Rock4-2]
 gi|228702960|gb|EEL55421.1| hypothetical protein bcere0023_29380 [Bacillus cereus Rock4-2]
          Length = 801

 Score =  321 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 100/532 (18%), Positives = 210/532 (39%), Gaps = 47/532 (8%)

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVD-----KCPIPFFVYSHGNLFYANPSFLLL 351
            +  E +      +     +   + T E ++                G++  AN ++  +
Sbjct: 294 GQVIEVVGSTVDITERKKVESELSATKELLESFIKHNLDAITISDREGHILQANKAYEKI 353

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ-WNRENS 410
             + S + I            P + D    + +   +   T  +   RL T++  +  + 
Sbjct: 354 FGWSSQEIIGKRL--------PCVPDFLMEESLKNIQKILTGESVVTRLETVRQRSDGSL 405

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK-------MEIEVMQLCSILEATSD 463
           L ++       +     +  + I  +  + +  +R+       +    M+  +++E  +D
Sbjct: 406 LDVSLTVSPILDVRGNVIALSAICRDISERKQAERERHRLHQQLRDSEMKYRALIEQATD 465

Query: 464 GIAII-----NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
            + ++     N     +  N    + FGY  E++L   F+  + Q++  ++   L +I  
Sbjct: 466 AVYVVELNEENAPSRFIEVNPVGCRRFGYSREELLSLSFSNIVPQDSQMIVR-LLEKIKK 524

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578
                TL+   +  T +       + +  L     +     DI+E  + +  L  ++K+A
Sbjct: 525 GQTSFTLQDEYVFPTGKVITTEFSVRVFNLNGKKVFLSISRDITERLKTEELLRKSEKLA 584

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
                        ++HEI  PLTA+ GF +++K+       +     Y N +      + 
Sbjct: 585 VV-----GQLATVMAHEINNPLTAMKGFMQLLKSTE-----SENNQGYINIVSSEIERIE 634

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
            I  + + ++K +  KM  +    ++   + + + L+Q  A    I I+      IP I 
Sbjct: 635 SITTEFMAVAKPQVVKMQPN----NISVLMDQVLMLLQPQAMMNNIKIKIDLNPGIPLIS 690

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
            +   +KQ+ +NIL NAI   P GG+I+I      N ++ +R  D G G+    +    +
Sbjct: 691 CEGNQLKQVFVNILKNAIESMPMGGEILIQLNILDNNQLSIRFIDQGCGIPKERIPYLGE 750

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           PF        I+ EG GLGL +   +++ + G  +I S   KGT +E+  P+
Sbjct: 751 PFY------SIKEEGIGLGLMICYKIIETHQGNVFIESEVNKGTTVEVTLPI 796



 Score =  108 bits (269), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 44/286 (15%), Positives = 91/286 (31%), Gaps = 21/286 (7%)

Query: 313 AYFDEGENLTPETVDKCPIPFF----VYSHGNLFYANPSFLLLTKYKSVDDIEI-AGGLS 367
               + +    +TV +     F    V  H      +  F     + S   +      + 
Sbjct: 186 RELKKSKQELADTVHELQGGIFKFKKVGKHFIHTLCDGQFYYQNGFYSEQVVGKSLRTID 245

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
             +  P L          L   +   I        + W  + ++ +         +  + 
Sbjct: 246 ASIVPPHLVPQLMKY--YLQAWEGKEIIFE-----LPWPNDKTIILI--ALRPIKRNGQV 296

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
           +   G   +  + +  + ++      L S ++   D I I +REG IL  N+A  K+FG+
Sbjct: 297 IEVVGSTVDITERKKVESELSATKELLESFIKHNLDAITISDREGHILQANKAYEKIFGW 356

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
             ++I+ K     +           + +IL           T+    +  LL + + +  
Sbjct: 357 SSQEIIGKRL-PCVPDFLMEESLKNIQKIL-TGESVVTRLETVRQRSDGSLLDVSLTVSP 414

Query: 548 LPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
           +               DISE KQ + +     +   ++S  K   L
Sbjct: 415 ILDVRGNVIALSAICRDISERKQAERERHRLHQQL-RDSEMKYRAL 459



 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/286 (12%), Positives = 83/286 (29%), Gaps = 23/286 (8%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG-KTT 148
           D  G++ + ++   K  G  + ++IG RL  V D L  +   +I  +L  ++     +T 
Sbjct: 338 DREGHILQANKAYEKIFGWSSQEIIGKRLPCVPDFLMEESLKNIQKILTGESVVTRLETV 397

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +G+ L V + ++  PI              I               RL ++     
Sbjct: 398 RQRSDGSLLDVSLTVS--PILDVRGNVIALS--AICRDISERKQAERERHRLHQQLRDSE 453

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLR--------------MKNKVSSLTEY-YAHKDDV 253
              +       +   +          R               + ++ SL+      +D  
Sbjct: 454 MKYRALIEQATDAVYVVELNEENAPSRFIEVNPVGCRRFGYSREELLSLSFSNIVPQDSQ 513

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
           +       +   ++S   Q+++        T +               +LS     +   
Sbjct: 514 MIVRLLEKIKKGQTSFTLQDEYVFPTGKVITTEFSVRVFN--LNGKKVFLSISRDITERL 571

Query: 314 YFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVD 358
             +E    + +      +     +   N   A   F+ L K    +
Sbjct: 572 KTEELLRKSEKLAVVGQLATVMAHEINNPLTAMKGFMQLLKSTESE 617


>gi|320354404|ref|YP_004195743.1| PAS/PAC sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
            2032]
 gi|320122906|gb|ADW18452.1| PAS/PAC sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
            2032]
          Length = 1251

 Score =  321 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 98/733 (13%), Positives = 194/733 (26%), Gaps = 57/733 (7%)

Query: 117  RLCDVSDILH-IDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPI-YSRNRE 174
                +          +   D L+       +        +  +  +      + +    +
Sbjct: 391  TWQVMIHPEDMPHLRDAYRDYLRSGGKGLFEIEFRLRSASGDWRWVLSKGKAVAWDEQGQ 450

Query: 175  FSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL 234
             S   G  I          +   +R + +F  L  +     +       I         +
Sbjct: 451  PSRLIGLDI--DIEELKKAQEAMRRSEARFRSLFAMAPVPLASASRDGRILMVNDRFTQI 508

Query: 235  ---RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYT------- 284
                + +  +    +     D     +        +      +F  I+            
Sbjct: 509  LGYTLADLPTLEQWWLLAYPDPQYRHEVRQHWQTVAQQALHGEFGMISGEFRVTCKDGIE 568

Query: 285  KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFY 343
            +    G           +     H       D         V   P+   V+   G +  
Sbjct: 569  RIMLIGAASIGEVLHVSFFDITEHKRAEEVLDRERTNLRAIVHASPVAVLVFDSGGRVVD 628

Query: 344  ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN----------AIKPVMLYRSDRTC 393
            AN +   L    S        G         +                   +      + 
Sbjct: 629  ANRAVERLFALTSGQWRGGTWGDLLRCPNRLVHPQGCGHAPDCVNCVFSRAIRETITGST 688

Query: 394  IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
             A       +     ++  +      +  +            +    R  +  +     +
Sbjct: 689  PARDREAEAVLDVPGSAKRLWLRFSIEPFELNGQPHVVMALDDLSARRQAEEALRASEAK 748

Query: 454  LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
            L S+  A  D I +++  G  L        L   P E +L K           +     +
Sbjct: 749  LRSLFAAMQDVILVLDANGRYLEIAPTDPSLLCRPPEGLLGKTLAEVFPPEKAAEFLAAI 808

Query: 514  TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH 573
              +L    R  L+        + + L    I+  L  +    L   DI++ K+ + +   
Sbjct: 809  RTVLDNGKRVFLDYTVPVV--DGRDLWFAAIVAPL-AADRVVLIARDITDRKRAEEERGK 865

Query: 574  AKKIAEKES--SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
             ++   +             V+H+    L AIIG++E+                    I 
Sbjct: 866  LQEQLMQSQKLEAVGILAGGVAHDFNNMLGAIIGYTELTLGTM---EQTDPLRRNLQRIL 922

Query: 632  RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
             +      +   LL  ++    K  +    + L+E+V+  + +++     + I +     
Sbjct: 923  DAAERSAALTRQLLAFAR----KQTVAPVILDLNESVAGMLKMLRRLI-GENITLAWLPG 977

Query: 692  NNIPRILADLRSVKQIALNILSNAIHFTPSG-GQIIISTT--------------HTSNEE 736
                 +  D   + Q+  N+  NA        G I I T                   E 
Sbjct: 978  PLPCTVRIDPTQLDQLLANLCVNARDAIGENIGTITIKTATVSLDETFCRAQASAAPGEY 1037

Query: 737  VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
            V+L V D G GM    ++   +PF          G+GTGLGL     +V  N G     S
Sbjct: 1038 VLLAVSDDGCGMDKATMDHIFEPFFTTKEL----GQGTGLGLATVYGIVTQNEGFITAAS 1093

Query: 797  TPAKGTLIEIIFP 809
             P  GT   +  P
Sbjct: 1094 EPGTGTTFTVHLP 1106



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/472 (8%), Positives = 89/472 (18%), Gaps = 60/472 (12%)

Query: 91  AHGYLKEISEELPKTIGNYAFKM-IGMRLCDVSDILHIDPNNHIGD-------LLKRQ-N 141
             G +  +++   + +G     +    +   ++       +             L  +  
Sbjct: 494 RDGRILMVNDRFTQILGYTLADLPTLEQWWLLAYPDPQYRHEVRQHWQTVAQQALHGEFG 553

Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
              G+  +   +G    + I  A++       E      F              +  R  
Sbjct: 554 MISGEFRVTCKDGIERIMLIGAASI------GEVLHVSFF----DITEHKRAEEVLDRER 603

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSP-----------------------PPHLRMKN 238
                +         V      +                             P  L    
Sbjct: 604 TNLRAIVHASPVAVLVFDSGGRVVDANRAVERLFALTSGQWRGGTWGDLLRCPNRLVHPQ 663

Query: 239 KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT--LQNNS 296
                 +           E     T       E       +  +   +       L    
Sbjct: 664 GCGHAPDCVNCVFSRAIRETITGSTPARDREAEAVLDVPGSAKRLWLRFSIEPFELNGQP 723

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKS 356
                                 E               V        AN  +L +     
Sbjct: 724 HVVMALDDLSARRQAEEALRASEAKLRSLFAAMQDVILVLD------ANGRYLEIAPTDP 777

Query: 357 VDDIEIAGG-LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
                   G L   L      +  A     +                   +  +      
Sbjct: 778 SLLCRPPEGLLGKTLAEVFPPEKAAEFLAAIRTVLDNGKRVFLDYTVPVVDGRDLWFAAI 837

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
           +    A++               + R   ++  ++  +L ++      GI      G+  
Sbjct: 838 VAPLAADRVVLIARDITDRKRAEEERGKLQEQLMQSQKLEAV------GIL---AGGVAH 888

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
             N  +  + GY    +     T  L +N   +++                +
Sbjct: 889 DFNNMLGAIIGYTELTLGTMEQTDPLRRNLQRILDAAERSAALTRQLLAFAR 940



 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/325 (8%), Positives = 74/325 (22%), Gaps = 36/325 (11%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI---------DPN-------NHI 133
           D+ G + + +  + +     + +  G    D+    +           P+         I
Sbjct: 621 DSGGRVVDANRAVERLFALTSGQWRGGTWGDLLRCPNRLVHPQGCGHAPDCVNCVFSRAI 680

Query: 134 GDLLKRQNTWYGK--TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI-VHVNRVD 190
            + +        +    +  + G+   + +  +  P      E +G     + +      
Sbjct: 681 RETITGSTPARDREAEAVLDVPGSAKRLWLRFSIEP-----FELNGQPHVVMALDDLSAR 735

Query: 191 NDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL--RMKNKVSSLTEYYA 248
                  +  + K   L    +    V              P L  R    +   T    
Sbjct: 736 RQAEEALRASEAKLRSLFAAMQDVILVLDANGRYLEIAPTDPSLLCRPPEGLLGKTLAEV 795

Query: 249 HKDDVLKTEKYPLLT--SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
              +        + T       +        ++            L  +       +   
Sbjct: 796 FPPEKAAEFLAAIRTVLDNGKRVFLDYTVPVVDGRDLWFAAIVAPLAADR-----VVLIA 850

Query: 307 NHPSLSAYFDEGENLTPETVDKCP--IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364
              +     +E      E + +        + + G     N     +  Y  +  +    
Sbjct: 851 RDITDRKRAEEERGKLQEQLMQSQKLEAVGILAGGVAHDFNNMLGAIIGYTELT-LGTME 909

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRS 389
               L    +   + A +   L R 
Sbjct: 910 QTDPLRRNLQRILDAAERSAALTRQ 934



 Score = 42.7 bits (99), Expect = 0.29,   Method: Composition-based stats.
 Identities = 34/267 (12%), Positives = 73/267 (27%), Gaps = 38/267 (14%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTW--YGK 146
            +DA+G   EI+   P  +      ++G  L +V       P     + L    T    GK
Sbjct: 763  LDANGRYLEIAPTDPSLLCRPPEGLLGKTLAEVF------PPEKAAEFLAAIRTVLDNGK 816

Query: 147  TTLWP-----IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
                      ++G +  +       P+ +        R   I               +L 
Sbjct: 817  RVFLDYTVPVVDGRD--LWFAAIVAPLAAD-------RVVLIARDITDRKRAEEERGKLQ 867

Query: 202  KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS--SLTEYYAHKDDVLKTEKY 259
            ++           S   +    +    +   +  +   +    LT     + D L+    
Sbjct: 868  EQLMQ--------SQKLEAVGILAGGVAHDFNNMLGAIIGYTELTLGTMEQTDPLRRNLQ 919

Query: 260  PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
             +L + E S             + T       L  +     + L      +++  +  G 
Sbjct: 920  RILDAAERS-AALTRQLLAFARKQTVAPVILDLNESVAGMLKMLRRLIGENITLAWLPGP 978

Query: 320  -----NLTPETVDKCPIPFFVYSHGNL 341
                  + P  +D+      V +   +
Sbjct: 979  LPCTVRIDPTQLDQLLANLCVNARDAI 1005


>gi|15616588|ref|NP_244894.1| two-component sensor histidine kinase [Bacillus halodurans C-125]
 gi|10176651|dbj|BAB07745.1| two-component sensor histidine kinase [Bacillus halodurans C-125]
          Length = 607

 Score =  321 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 84/370 (22%), Positives = 160/370 (43%), Gaps = 25/370 (6%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +      + E  +L S+L   +DG+   ++ G ++  N+   ++ G   E++        
Sbjct: 253 KDALSTRDQEQKKLRSVLTHMTDGVIASDKYGKMILMNKRAEEMLGVSYEEVQGTLLPEL 312

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
           L  +    ++       S+ L  + E+  L         S  +I +     +     +HD
Sbjct: 313 LNISETFAVDELYDYNDSVLLDFSTEEDYLIQA------SFSVIQEDEGPVNGLITVLHD 366

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           ++E ++ + +              + +F+A VSHE+RTPLT +  + E +     G + +
Sbjct: 367 VTEREKIEQE--------------RREFVANVSHELRTPLTTMKSYLEAL---DDGAMND 409

Query: 621 PRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
           P     + +        ++ +VNDLL +SKI++    L+   V L   + + I   ++ A
Sbjct: 410 PNLAPRFLHVTQNETERMIRLVNDLLQLSKIDTHDYKLNLSWVDLGPYLHDMIDRHEIIA 469

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
            EK I        +   +  D   + Q+  NILSNA+ ++P GG + I+        V +
Sbjct: 470 KEKDIHFIRKITKHATFVEIDQDKLTQVIDNILSNAMKYSPEGGDVTITL-LHQGHNVRV 528

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            + D G+G+      K    F ++  ++     GTGLGL +AK +V A+ G+ ++ S   
Sbjct: 529 SISDQGMGIPKESQTKIFDRFYRVDKARARSVGGTGLGLAIAKELVHAHGGEIWVESKYK 588

Query: 800 KGTLIEIIFP 809
            GT I    P
Sbjct: 589 VGTTIYFTLP 598


>gi|256829207|ref|YP_003157935.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256578383|gb|ACU89519.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 1096

 Score =  321 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 110/794 (13%), Positives = 242/794 (30%), Gaps = 100/794 (12%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ++  G +  +++     +G    + +G  + D                 +++        
Sbjct: 191 LEPDGKVITVNKTFAARVGRTVEECLGQSIYDFIPPE--------AAQTRKRMVEDLVRN 242

Query: 149 LWPIEGTNLYV--PIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS- 205
             P+   +      +  +  P+   +   +    F +           AL     +    
Sbjct: 243 ARPVAFEDERHGRWMRHSLSPVLGSDGTVAAVAIFAM--DLTERRRREALLLARQRLGEY 300

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP----- 260
            ++   K       ++ +  +  +      +  K  ++T        +      P     
Sbjct: 301 AINHSLKDLLRKALDEAETVTGSTLSFLHFLDEKQRTMTMQAWSTRTLRTGFMVPEKNLP 360

Query: 261 -------------------------------LLTSEESSLPEQEDFHTINLNQYTKKQYF 289
                                           + S    L          + +       
Sbjct: 361 YDLGQSGVWADCVRLRRAVVHNDYAALGHKKGMPSGHPPLVRMMLLPVFRVERIVAIVAM 420

Query: 290 GT-----LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP----IPFFVYS-HG 339
           G         + +   E  +            E    +   ++       I  + +    
Sbjct: 421 GNKASDYTDEDVQALTELGTLLWDILEHKRAQEELGKSEALLNMTQRLSRIGGWQWDVTQ 480

Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD--RTCIAAS 397
            +         L  +         G    +  +    +    + +     +     +   
Sbjct: 481 GVMTWTRELYRLHGFAPDQF--EPGSPEHIRSSQACYEPEDRELIRQAFENCVTHGLPYD 538

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
             L       E          E   +        G   +  + R  ++       +  ++
Sbjct: 539 LELTFTPVGGERIR--IRTSGEAMWENGRVSKVLGTFQDITEKRALEQ-------RYEAL 589

Query: 458 LEATSDGI----AIINREGI-----ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
            +   DG      I +  G       L  N A  +  G   +DI  +     L      V
Sbjct: 590 FQHMLDGFALHEIICDASGRPVDYRFLEVNPAFERHTGLAGKDIKGRTVREVL-PLVEQV 648

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI-IIKKLPFSSCYSLTMHDISEWKQE 567
                 ++         E+      K      +       +     ++    DI++ K+ 
Sbjct: 649 WIDTYGKVALTGEPVFFEEYASAQDK---FFQVSAFRPTPMR----FACIFTDITDRKRY 701

Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
           +  L  AK  AE  +  KS+FLA +SHEIRTPL  I+G   + ++Q           +  
Sbjct: 702 ERDLRQAKDAAEAANVAKSEFLANMSHEIRTPLNGIMGILHLFESQDLPG----EQKKLL 757

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
              + S   +  +++D+LD+++IESGK+ +   P +  E  +  + L  L A  K + + 
Sbjct: 758 ELANTSAGRLNGLLSDILDLARIESGKLAIQSAPFAPRELRASTLGLFTLAAQGKNLSLE 817

Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EVILRVRD 743
               + +P  +  D   ++Q+  N++ N++ FT +G  + +            ++  V D
Sbjct: 818 FILDDTLPSMLEGDESRLRQVLFNLVGNSLKFTRAGF-VRVEVGPLPGGASPRILFCVTD 876

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           +G G+++++L+    PF Q  +S   R +G GLGL + K +V    G   + S+   GT 
Sbjct: 877 SGPGISDHQLKDIFTPFVQGEDSYVRRHQGAGLGLAIVKRIVGLMDGCLCVDSSAN-GTT 935

Query: 804 IEIIFPLYDTSHPH 817
           I    P+  ++   
Sbjct: 936 ICFSLPMSASTAAQ 949



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/331 (10%), Positives = 90/331 (27%), Gaps = 38/331 (11%)

Query: 272 QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR-NHPSLSAYFDEGENLTPETVDKCP 330
           + D  T        +     L++  +   E                  + L    +   P
Sbjct: 5   ENDLKTNPEQGQASEDLLRELESLRRRVTELEDITCAAALAEETLAHQDALMQAMLRNLP 64

Query: 331 IPFFVYS-HGNLFYANPSFLLLTK------YKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
           + F+    + N+   + + + L            D  E        ++    +       
Sbjct: 65  LDFWARDLNENIIIQSDASVRLWGDLSTTRVDDADVSEEIRSTWRSVNERVYAGEVLTGE 124

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
                 +         +  I+   E                   +   G   +  +   +
Sbjct: 125 KEYVLPNGEKRIFRDIVAPIRKGDET------------------LGILGTNIDITEHVHS 166

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
              +      L S+L +  +  A++  +G +++ N+  +   G  VE+ L +    F+  
Sbjct: 167 ILALHKSEAHLASLLNSIDESAALLEPDGKVITVNKTFAARVGRTVEECLGQSIYDFIPP 226

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM----H 559
                    + +++        E    G         +R  +  +  S      +     
Sbjct: 227 EAAQTRKRMVEDLVRNARPVAFEDERHGR-------WMRHSLSPVLGSDGTVAAVAIFAM 279

Query: 560 DISEWKQEKNKLSHAKKI-AEKESSHKSDFL 589
           D++E ++ +  L   +++     +    D L
Sbjct: 280 DLTERRRREALLLARQRLGEYAINHSLKDLL 310



 Score = 37.7 bits (86), Expect = 8.1,   Method: Composition-based stats.
 Identities = 17/142 (11%), Positives = 41/142 (28%), Gaps = 5/142 (3%)

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
           +   + ++L          +    I+  + A  +L+G    D+                 
Sbjct: 52  QDALMQAMLRNLPLDFWARDLNENIIIQSDASVRLWG----DLSTTRVDDADVSEEIRST 107

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-CYSLTMHDISEWKQEK 568
              + E +      T EK  +    E+++    +   +    +     T  DI+E     
Sbjct: 108 WRSVNERVYAGEVLTGEKEYVLPNGEKRIFRDIVAPIRKGDETLGILGTNIDITEHVHSI 167

Query: 569 NKLSHAKKIAEKESSHKSDFLA 590
             L  ++       +   +  A
Sbjct: 168 LALHKSEAHLASLLNSIDESAA 189


>gi|227543740|ref|ZP_03973789.1| histidine kinase [Lactobacillus reuteri CF48-3A]
 gi|300908805|ref|ZP_07126268.1| sensor histidine kinase [Lactobacillus reuteri SD2112]
 gi|227186308|gb|EEI66379.1| histidine kinase [Lactobacillus reuteri CF48-3A]
 gi|300894212|gb|EFK87570.1| sensor histidine kinase [Lactobacillus reuteri SD2112]
          Length = 598

 Score =  321 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 83/426 (19%), Positives = 170/426 (39%), Gaps = 44/426 (10%)

Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI-EVMQLC 455
             R  T++  R       +    K     E     G            ++    E  +L 
Sbjct: 188 EMRKQTLRIARG-----DYSGQVKVLGNDELGQLAGAVNNLSVRVEEAQESSDSERRRLD 242

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYP-VEDILRKPFTVFLEQNTPSVMNHYLT 514
           SIL   SDG+   +R G +   N    +L G    +D++ K     L+      +   + 
Sbjct: 243 SILSHMSDGVLATDRRGNVTIVNNMALQLLGVENEDDLIGKSIIDVLDIRHDYTVRQLVN 302

Query: 515 EILSLDLRQTLEKITLGSTKE-EKLLSLRIIIKKLPFSSCYS----LTMHDISEWKQEKN 569
                      ++  +         L L      +   S +       +HD++  ++E+ 
Sbjct: 303 G---------EQREMIIDMSNSGNNLILNAYFSPIQRESGFVSGLVCVLHDVTSQQKEER 353

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +              +  F++ VSHE+RTPLT++  + E + +  +         ++   
Sbjct: 354 E--------------RKQFVSNVSHELRTPLTSVRSYVEALSDGAWQ--DKEIAPKFLKV 397

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI----- 684
           +    + ++ ++NDLL +S++++G   L+ E V+++E  +  +    +   ++       
Sbjct: 398 VQDETDRMIRMINDLLSLSRMDAGTTKLNLEYVNINELFNYILDRFDMIIKKEEDPKKKK 457

Query: 685 -LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
             I   F      +  D     Q+  NI++NAI ++P GG I       ++  VIL + D
Sbjct: 458 YTIERYFTKKDLWVEIDTDKFTQVIDNIMNNAIKYSPDGGVITTRL-LETHNHVILSISD 516

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
            G+G+   +L +    F ++  ++  +  GTGLGL ++K +++   G+ ++ S   KG+ 
Sbjct: 517 QGLGIPRKDLGRIFDRFFRVDKARSRKQGGTGLGLAISKEVINMLGGQIWVDSVEGKGST 576

Query: 804 IEIIFP 809
             I  P
Sbjct: 577 FYISLP 582


>gi|254285971|ref|ZP_04960932.1| sensor histidine kinase FexB [Vibrio cholerae AM-19226]
 gi|150423881|gb|EDN15821.1| sensor histidine kinase FexB [Vibrio cholerae AM-19226]
          Length = 785

 Score =  321 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 87/387 (22%), Positives = 165/387 (42%), Gaps = 19/387 (4%)

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
            +E E       + ++      L S ++A+ D I   N +G     NRA+ +L G    +
Sbjct: 135 DLENEVYQREKTQVELAERTALLRSFIDASPDLIYYRNAKGEFSGCNRAMEELTGKRESE 194

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
           ++         +     +     ++ + +   T E+        +    LR +       
Sbjct: 195 LVGLTPWDVYRKEIAQSIVETDQQVFNNNTAITYEQWLEYPDGRKSFFELRKVPFYNKDG 254

Query: 552 S--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                     DI+E K+ +  L       EK S  K+ F++ +SHE+RTPL  I+G S +
Sbjct: 255 RHLGLVGFGRDITERKRHEESL-------EKASRDKTTFISTISHELRTPLNGIVGLSRM 307

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           + +            ++   I+ S   + +I ND++D+ K +  K+ L    ++ +E V+
Sbjct: 308 LLDTPLSG----EQRKHLQTINVSAVTLGNIFNDIIDMDKFDRRKLELFPAALNFEEFVA 363

Query: 670 EAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI-II 727
           E   L  L A +K +        ++P  +  D   ++Q+  N+LSNA+ FT  GG +  +
Sbjct: 364 EIEVLAALMAEQKGLRFDLERLTDLPSLVEVDSTRLRQVLWNLLSNAMKFTKEGGVVMTV 423

Query: 728 STTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGEGTGLGLPLAKAMV 785
           S    +   E+ + V DTG+G+   E EK    + Q+ + +      GTG+GL +++ ++
Sbjct: 424 SAECDAQHAEITIEVEDTGIGIPEAEQEKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLI 483

Query: 786 DANMGKFYIFSTPAKGTLIEIIF--PL 810
               G   + S    G+   +    PL
Sbjct: 484 KLMGGDISVNSEEGFGSTFTVTIRVPL 510



 Score = 45.0 bits (105), Expect = 0.054,   Method: Composition-based stats.
 Identities = 16/128 (12%), Positives = 34/128 (26%), Gaps = 3/128 (2%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           +A G     +  + +  G    +++G+   DV               +   NT       
Sbjct: 172 NAKGEFSGCNRAMEELTGKRESELVGLTPWDVYRKEIAQSIVETDQQVFNNNTAITYE-Q 230

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
           W           +L  +P Y+++    G  GFG               ++  +  +    
Sbjct: 231 WLEYPDGRKSFFELRKVPFYNKDGRHLGLVGFG--RDITERKRHEESLEKASRDKTTFIS 288

Query: 210 IKKGHSSV 217
                   
Sbjct: 289 TISHELRT 296


>gi|146297038|ref|YP_001180809.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145410614|gb|ABP67618.1| PAS/PAC sensor signal transduction histidine kinase
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 565

 Score =  321 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 86/357 (24%), Positives = 166/357 (46%), Gaps = 29/357 (8%)

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
           +L ++L +   GI   + +  IL  N+   ++F   ++          +          Y
Sbjct: 237 RLSALLNSIELGIIFFDNKKRILMFNQQAEEIFATKLK--NGTSLLECIRIYELFEFL-Y 293

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRI-IIKKLPFSSCYSLTMHDISEWKQEKNKL 571
              +   +   T+         + K+L +    +K         L + DI+  K+ +   
Sbjct: 294 DENVFEKEFEITIN-------GQNKILKVTKKRVKYDEDKEGMLLVVSDITFIKKLE--- 343

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
                        +SDF+A VSHE++TPLT+I GF E +K+            ++ N I+
Sbjct: 344 -----------KIRSDFVANVSHELKTPLTSIKGFVETLKDGAI--EDKEIAGKFLNIIE 390

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
                ++ ++NDLL +S+IE+ K+ +  + V++ E + E I L++  A  K I ++    
Sbjct: 391 VEVERLVRLINDLLYLSEIENAKIQVTEDDVNVKEVLEECIELLRFKAESKNIKMQLRLD 450

Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751
           + + ++      +KQI +N++ NAI +    G++II        ++ +RV+DTG+G+   
Sbjct: 451 DKL-KMKIHKDWLKQIFINLIDNAIVYNRENGEVIIEVERLDE-KIAIRVKDTGIGIPQN 508

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           E+E+  + F ++   +  +  GTGLGL + K +V+   GK Y+ S   KG+   I+ 
Sbjct: 509 EIERIFERFYRVDKGRSRKLGGTGLGLSIVKHIVELYNGKIYVQSEVGKGSEFTIVI 565


>gi|260767346|ref|ZP_05876285.1| aerobic respiration control sensor protein ArcB [Vibrio furnissii
           CIP 102972]
 gi|260617669|gb|EEX42849.1| aerobic respiration control sensor protein ArcB [Vibrio furnissii
           CIP 102972]
          Length = 781

 Score =  321 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 88/404 (21%), Positives = 172/404 (42%), Gaps = 19/404 (4%)

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
               +         +E E       + ++      L S ++A+ D I   N +      N
Sbjct: 122 RIKAEEAREEAMVDLENEVYQREKTQVELAERTALLRSFIDASPDLIYYRNSKCEFSGCN 181

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
           RA+ +L G    D++         +     +     ++   +   T E+        +  
Sbjct: 182 RAMEELTGKRESDLVGLTPWDVYRKEIAQSIVETDQQVFDNNRSLTYEQWLEYPDGRKSY 241

Query: 539 LSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
             LR +                 DI+E K+ +  L       EK S  K+ F++ +SHE+
Sbjct: 242 FELRKVPFYSKDGRHLGLVGFGRDITERKRHEESL-------EKASRDKTTFISTISHEL 294

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTPL  I+G S ++ + +     +P   ++   I+ S   + +I ND++D+ K +  K+ 
Sbjct: 295 RTPLNGIVGLSRMLLDTQL----DPEQRKHMQTINVSAVTLGNIFNDIIDMDKFDRRKLE 350

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNA 715
           L   P++ +E V+E  SL  L A +K +        ++P  +  D   ++Q+  N++SNA
Sbjct: 351 LFPAPLNFEEFVAELESLSALMAEQKGLRFDLERLTDLPALVEVDATRLRQVLWNLISNA 410

Query: 716 IHFTPSGGQI-IISTTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGE 772
           + FT  GG +  +S     +   +++ + DTG+G+   EL+K    + Q+ + +      
Sbjct: 411 MKFTKEGGVVMSVSAEVEGDFANIVMDIEDTGIGIPESELDKIFAMYYQVKSGKDNLHAV 470

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF--PLYDTS 814
           GTG+GL +++ +++   G   + S    G+   +    PL   S
Sbjct: 471 GTGIGLAVSRQLINLMGGDISVSSEEGFGSTFTVTICVPLSHAS 514



 Score = 46.2 bits (108), Expect = 0.021,   Method: Composition-based stats.
 Identities = 30/233 (12%), Positives = 58/233 (24%), Gaps = 20/233 (8%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPIE 153
               +  + +  G     ++G+   DV               +     +   +  L   +
Sbjct: 177 FSGCNRAMEELTGKRESDLVGLTPWDVYRKEIAQSIVETDQQVFDNNRSLTYEQWLEYPD 236

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
           G   Y   +L  +P YS++    G  GFG               ++  +  +        
Sbjct: 237 GRKSYF--ELRKVPFYSKDGRHLGLVGFG--RDITERKRHEESLEKASRDKTTFISTISH 292

Query: 214 HSSVEKEKYDIFSQQSPPPHLRMKNKV--------------SSLTEYYAHKDDVLKTEKY 259
                       S+      L  + +                        K D  K E +
Sbjct: 293 ELRTPLNGIVGLSRMLLDTQLDPEQRKHMQTINVSAVTLGNIFNDIIDMDKFDRRKLELF 352

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
           P   + E  + E E    +   Q   +     L +      E  + R    L 
Sbjct: 353 PAPLNFEEFVAELESLSALMAEQKGLRFDLERLTDL-PALVEVDATRLRQVLW 404


>gi|119356453|ref|YP_911097.1| multi-sensor hybrid histidine kinase [Chlorobium phaeobacteroides DSM
            266]
 gi|119353802|gb|ABL64673.1| multi-sensor hybrid histidine kinase [Chlorobium phaeobacteroides DSM
            266]
          Length = 1398

 Score =  321 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 101/622 (16%), Positives = 211/622 (33%), Gaps = 66/622 (10%)

Query: 244  TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303
               +   +D        +L  ++ S  +   F  I L           L        + +
Sbjct: 479  RLNFLPLEDASGRTIGRMLVIQDVSFYQAGIFRMITLAGIALLVILSLLFGFLFVVLKRI 538

Query: 304  SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEI 362
                        D  E      V+      + +   +   Y +P +     Y+  D    
Sbjct: 539  DRGVINREQELIDSREQ-YRLAVNGSNDGIWDWDMRSDTLYLSPKWKKTLGYEDDDL--- 594

Query: 363  AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
               +    +     ++  +    L R     I        I+      + +        +
Sbjct: 595  -SNIYKTFEDLVHPEDKPVFRTYLDRYLNGEIPLFNIEFRIRHKDGAYVWILGRGEVLRD 653

Query: 423  QFPENMPQNGIEPEDVDTRINKRKMEIEVM------------------QLCSILEATSDG 464
            +        G   +    + ++ +++                      +L   +E     
Sbjct: 654  KSGSPYRMAGSMSDITGRKKDEDELKRRSAFQLVVMDLAIGFVNTPLDELDRSIERALAL 713

Query: 465  I---AIINRE--GIILSTNRAVSKLF-----GYPVEDILRKPFTVFLEQNTPSVMN---- 510
            +     ++R         N  +S        G   E    +     +  +  +       
Sbjct: 714  VGEFLQVDRSYLFRYDFANGTMSNTHEWCSEGIAPEKNNLQNLLNSIIPDWVATHLAGRI 773

Query: 511  ------HYLTE-------ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT 557
                    L +       + S  ++  +    +        +    + +   +       
Sbjct: 774  VHISSVDALDDESALKMILASQGIKTLISLPLIYHEHCFGFVGFDAVREVKKWGDDEISL 833

Query: 558  MHDISE-------WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
            +  ++E         + +  L  A+  AE  +  KS+FLA +SHEIRTP+  +IG + ++
Sbjct: 834  LRVLAELFTNAELRFRHETALVDARYAAESANRAKSEFLANMSHEIRTPMNGVIGMANLL 893

Query: 611  KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
             +       +    ++A+ +  SG  +L ++ND+LD SKIE+GK+ L      L + +  
Sbjct: 894  LDTDL----SDEQRDFADMLLASGESLLTVINDILDFSKIEAGKLELEHIVFDLRKLLES 949

Query: 671  AISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIIS 728
              +++ L A EK +      +  +P     D   ++QI  N+  NAI FT +G   + +S
Sbjct: 950  FGAVMGLKAVEKNLEFNCVVSPEVPVFFKGDPGRIRQILNNLAGNAIKFTQNGNVTVAVS 1009

Query: 729  TTHTSNEE--VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
                +N +  +   V+DTG+G+   +L++  K F Q+  S   +  GTGLGL +++ +V+
Sbjct: 1010 MQSENNGDAVLRFSVKDTGIGIPEAKLDRLFKSFTQVDASTTRKYGGTGLGLAISRQLVE 1069

Query: 787  ANMGKFYIFSTPAKGTLIEIIF 808
               GK  + S    G+      
Sbjct: 1070 LMGGKIGVISHEGNGSEFWFTI 1091


>gi|283780710|ref|YP_003371465.1| PAS/PAC sensor hybrid histidine kinase [Pirellula staleyi DSM 6068]
 gi|283439163|gb|ADB17605.1| PAS/PAC sensor hybrid histidine kinase [Pirellula staleyi DSM 6068]
          Length = 1413

 Score =  321 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 128/813 (15%), Positives = 249/813 (30%), Gaps = 70/813 (8%)

Query: 45   CHDSFEQSN------FTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEI 98
             H S             D +    +     +SE           V  TW  +        
Sbjct: 496  VHTSPTGEPIRMVGVTLDIDHRKATEAALAESEERLRLTLEAAKVG-TWEWNLKTNSVAG 554

Query: 99   SEELPKTIGNYAF--KMIGMRLCDVSDILHIDPNNH--IGDLLKRQNTWYGKTTLWPIEG 154
            S EL    G              +       D      +  L    N       +WP   
Sbjct: 555  SPELGPMHGRPRGMFHTSVECFLEAIHPQDRDDVRVAIVNALTGDGNFAQDYRVIWP--- 611

Query: 155  TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214
             +    I      I+  +       G  I        +     +  ++++  L +  +  
Sbjct: 612  DSSVRWIADRGRTIFDGDGNPVRMLGAAI--DITERKEVERRHREQEEQYRLLADSMEDF 669

Query: 215  SSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271
             S+                      +    S      H DDV   E+  L      S   
Sbjct: 670  VSLSDLNRRPHYVSPSFYRITGYSPEEIDQSDFSTRIHPDDVPAVEQARLDNLRGLSTRI 729

Query: 272  QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD----EGENLTPETVD 327
            +  F   N N          +     +    +      +     +    + E    E V+
Sbjct: 730  EYRFRCKNGNFIWLDLKATPVGLGDGKVDRIVCCARDITDRKLAELSALQSEARYRELVE 789

Query: 328  KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
              P    +   G   Y NP+ + L   + +DD         +      S    ++ V+  
Sbjct: 790  LSPEAIGIVQDGAFVYGNPAAVELLAARDIDDFLGVKMEDVIHPDDLTSTYERVQHVVAT 849

Query: 388  RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
            +         A    ++ + +    +T         +        I  +     + +  +
Sbjct: 850  QQAVPLRQIRA----VRRDGK---VITIETRVGPCVYGGKPAVQVIGRDVTQRLLTEEAL 902

Query: 448  EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
                 +  S++E   D I +++R G+I   N+A     G+ +ED++      F+  ++  
Sbjct: 903  RESEARWRSLVENAPDIIMMVDRSGLISFINKAGP---GFRIEDVIGSSSLQFISPSSQM 959

Query: 508  VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL-TMHDISEWKQ 566
                              E        E +   +R+   +    +   +    DI++ K+
Sbjct: 960  RARDAYARAWDYGETVDFEIEATPQNHESQYYEVRVSPIRSGERTVALINISRDITDRKR 1019

Query: 567  EKNKLSHAKKIAEKESSH--KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
               +    ++  ++             V+H+    LT +I ++ V+   +  P  +P  +
Sbjct: 1020 LAEERLQIERKLQETQRLESLGLLAGGVAHDFNNLLTGVINYT-VLAASKLAPKSSP--V 1076

Query: 625  EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
            EY    + +     D+   LL  S    G+  L  +P+++   VSE   L+Q     KRI
Sbjct: 1077 EYLEKAETAARRAADLTRQLLAYS----GRGKLVTQPLNVSSVVSEMRELLQTSI-SKRI 1131

Query: 685  LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG-GQIIISTTHTS---------- 733
                   +N+P ++AD   ++Q+ +N++ NA     +  G + + T              
Sbjct: 1132 TFSLQLTSNLPAVIADATQLRQVIMNLILNASEAIGTEIGVVTLKTHLVEATTESLISPY 1191

Query: 734  -------NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
                    + V + V DTG GM    L++   PF         +  G GLGL     +V 
Sbjct: 1192 SSDLLPPGKYVCVEVSDTGCGMVPATLQRIFDPFF------STKFAGRGLGLSAVLGIVR 1245

Query: 787  ANMGKFYIFSTPAKGTLIEIIFPLY--DTSHPH 817
             + G   + S P  GT   ++ P+   +T  P 
Sbjct: 1246 GHHGAIQVQSVPGSGTTFRVLLPIQAGETEAPE 1278



 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 50/548 (9%), Positives = 141/548 (25%), Gaps = 33/548 (6%)

Query: 65  TNYLDSENTFVFDPIPRTVRFT---WNIDAHGYLKEISEELPKTIGNYAFKMI--GMRLC 119
           T  L  EN  + D      R     W ID    + + + E  +  G      +       
Sbjct: 264 TEALLRENRMMLDVALSAARMVAWEWEIDND--ILKWTSEEGQVYGISPLARVNNAAAFM 321

Query: 120 DVSDILHIDPNNH-IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGF 178
           ++         +H I   ++    +  +  +   +G+     +D             +  
Sbjct: 322 ELVHPDDRQLVSHLIQRSVQTGLDYAVEYRVVWPDGSI--HWVDARGKARRDAEGRPTHL 379

Query: 179 RGFGIVHVNRVDNDPRALGKRLDKKFS------HLHEIKKGHSSVEKEKYDIFSQQSPPP 232
            G  I              +  +           L        S   +   +  +    P
Sbjct: 380 VGVSI--DIDQRKATEHQLRERELFLRMAMSSAKLAPWDFDLQSGLIKGDPLIGELFGAP 437

Query: 233 HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTK----KQY 288
               + +          +D               +    +     ++ + +      + +
Sbjct: 438 MQNDRGRNEDFFARIHPEDLPRVERAIQSSIENHTDYMIEFRVRHLDGSIHWLEGHGRVH 497

Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSF 348
                   +     L   +  +  A   E E     T++   +  + ++      A    
Sbjct: 498 TSPTGEPIRMVGVTLDIDHRKATEAALAESEERLRLTLEAAKVGTWEWNLKTNSVAGSPE 557

Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
           L     +       +         P+  D+  +  V     D       A+ + + W   
Sbjct: 558 LGPMHGRPRGMFHTSVECFLEAIHPQDRDDVRVAIVNALTGDGNF----AQDYRVIWPDS 613

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468
           +   +        +     +   G   +  + +  +R+   +  Q   + ++  D +++ 
Sbjct: 614 SVRWIADRGRTIFDGDGNPVRMLGAAIDITERKEVERRHREQEEQYRLLADSMEDFVSLS 673

Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528
           +        + +  ++ GY  E+I +  F+  +  +    +     + L     +     
Sbjct: 674 DLNRRPHYVSPSFYRITGYSPEEIDQSDFSTRIHPDDVPAVEQARLDNLRGLSTRI---E 730

Query: 529 TLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
                K    + L +    +               DI++ K  +     ++    +    
Sbjct: 731 YRFRCKNGNFIWLDLKATPVGLGDGKVDRIVCCARDITDRKLAELSALQSEARYRELVEL 790

Query: 585 KSDFLARV 592
             + +  V
Sbjct: 791 SPEAIGIV 798



 Score = 94.7 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 45/521 (8%), Positives = 123/521 (23%), Gaps = 40/521 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH--IDPNNHIGDLLKRQNTWYGK 146
           ID  G ++  S+     +G     ++G+ L D+  I    +     +      +      
Sbjct: 32  IDGEGIIRFASQNAVSLVGPTGKTLVGLPLVDLLAISESPLSGELELRSSFAAKLRHASV 91

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR----ALGKRLDK 202
               P+E     + I +   P+   +  F+G++    +                      
Sbjct: 92  PQQLPLE----SIYILVQTQPLAIAHPHFAGWQ-LLFLTPETSYLPTDGSDYQGELSATG 146

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
               L        SV   +                + VS    +       +  +  P+L
Sbjct: 147 YRKLLDLAVNDGVSVMSLQGRHLFDNEAA---VTISGVSREELHTQTPFSRVHPDDMPML 203

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQY------------FGTLQNNSKESFEYLSHRNHPS 310
               S L  +                                 +       +        
Sbjct: 204 RESWSQLATKPGTRVGPSYLRIMHHSGDWVWVEASGVNMTEDPDIGGMVAVWRIVEEQRR 263

Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
             A   E   +    +    +  + +   N +         +     +  +  A     L
Sbjct: 264 TEALLRENRMMLDVALSAARMVAWEWEIDNDILKWTSEEGQVYGISPLARVNNAAAFMEL 323

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
           +             +          A   R   + W   +   +      + +       
Sbjct: 324 VHPDD--RQLVSHLIQRSVQTGLDYAVEYR---VVWPDGSIHWVDARGKARRDAEGRPTH 378

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
             G+  +    +  + ++    + L   + +        + +  ++  +  + +LFG P+
Sbjct: 379 LVGVSIDIDQRKATEHQLRERELFLRMAMSSAKLAPWDFDLQSGLIKGDPLIGELFGAPM 438

Query: 490 EDILRKP--FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR----I 543
           ++   +   F   +       +   +   +       +E        +  +  L     +
Sbjct: 439 QNDRGRNEDFFARIHPEDLPRVERAIQSSIENHTDYMIEFRV--RHLDGSIHWLEGHGRV 496

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
                           DI   K  +  L+ +++        
Sbjct: 497 HTSPTGEPIRMVGVTLDIDHRKATEAALAESEERLRLTLEA 537



 Score = 68.1 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 25/285 (8%), Positives = 82/285 (28%), Gaps = 9/285 (3%)

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIA 363
             +  + ++   E              P   +   G + +A+ + + L        + + 
Sbjct: 1   MVDLSAFTSRVTEVGASLELLFGGSEKPVLAIDGEGIIRFASQNAVSLVGPTGKTLVGLP 60

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
                 +    LS    ++     +     +     L +I    +        P      
Sbjct: 61  LVDLLAISESPLSGELELRSSFAAKLRHASVPQQLPLESIYILVQTQPLAIAHPH--FAG 118

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE-ATSDGIAIINREGIILSTNRAVS 482
           +              D    + ++         +L+ A +DG+++++ +G  L  N A  
Sbjct: 119 WQLLFLTPETSYLPTDGSDYQGELSATG--YRKLLDLAVNDGVSVMSLQGRHLFDNEAAV 176

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
            + G   E++  +     +  +   ++    +++ +    +               + + 
Sbjct: 177 TISGVSREELHTQTPFSRVHPDDMPMLRESWSQLATKPGTRVGPSYLRIMHHSGDWVWVE 236

Query: 543 ---IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
              + + + P           + E ++ +  L   + + +   S 
Sbjct: 237 ASGVNMTEDPDIGGMVAVWRIVEEQRRTEALLRENRMMLDVALSA 281


>gi|295688464|ref|YP_003592157.1| multi-sensor hybrid histidine kinase [Caulobacter segnis ATCC
           21756]
 gi|295430367|gb|ADG09539.1| multi-sensor hybrid histidine kinase [Caulobacter segnis ATCC
           21756]
          Length = 696

 Score =  321 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 111/544 (20%), Positives = 203/544 (37%), Gaps = 20/544 (3%)

Query: 278 INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS 337
           + L      Q           S   L       +        +   E V+   I   V S
Sbjct: 23  LALALKAIVQAVEAEDPEILCSILLLDSERRRLVLGAAPSLPDFYNEAVEGVEIGPSVGS 82

Query: 338 HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397
            G   Y             +    +      L     L+   +     L  +     A  
Sbjct: 83  CGTAAY----LGRRVTVDDIQSSPLWTDFRELAAEAGLASCWSEPIRALDGAVVGTFAIY 138

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
            R  +     + +                   +     E       ++ ME     L S 
Sbjct: 139 HRQVSTPNKEDIAFIEAAAQLAAIAIDRRRAEEELAASELRARLSAEQAMETARN-LSSF 197

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
            + ++D + I + EG  +  N+A   + G+PVE +        L  +        +    
Sbjct: 198 FDVSADLLCIRDMEGRFVKVNQAWETVLGHPVEVLEGSGLLPLLHADDLESTRANMQRAE 257

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI 577
           +    +    +      +     L    ++            D++E  + + +++ A++ 
Sbjct: 258 ADG--EVNGFVNRYRRADGTYCQLEWRARRCGD--LVFGVARDVTERLRIEAEMAEARRA 313

Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
           AE  +  K+DFLA +SHEIRTPL  +IG +  +      P    R  E  + I RSG  +
Sbjct: 314 AETANKAKNDFLANMSHEIRTPLNGVIGIAAALGETALTP----RQAEMVDLIRRSGETL 369

Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI-PR 696
             +V+D+LD+SKIE+G+M +  +   LD  +   + + +L A EK + +R     ++   
Sbjct: 370 ERLVSDILDVSKIEAGQMTIQTQAFDLDGVLDGLLDVTRLRAKEKGVGVRVERGPSVSGG 429

Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-----VILRVRDTGVGMTNY 751
            L D   + Q+  N++SNA+ FT  G ++ +       ++     + + V DTGVG    
Sbjct: 430 FLGDSVRIGQVLSNLMSNAVKFTDRG-EVTVRIDVEDRDDGQASLLCVEVEDTGVGFDAA 488

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
           + E   + F Q  ++   R  G+GLGL +++ +V+   G     S P  G+L  ++ PL+
Sbjct: 489 KGEMIFQRFSQADSTITRRFGGSGLGLSISRTLVEMMGGAITARSKPGSGSLFRVVLPLH 548

Query: 812 DTSH 815
            T  
Sbjct: 549 RTEA 552



 Score = 44.2 bits (103), Expect = 0.095,   Method: Composition-based stats.
 Identities = 13/172 (7%), Positives = 40/172 (23%), Gaps = 14/172 (8%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D  G   ++++     +G+    + G  L  +     ++         +      G    
Sbjct: 209 DMEGRFVKVNQAWETVLGHPVEVLEGSGLLPLLHADDLESTRANMQRAEADGEVNGFVNR 268

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
           +            L             G   FG+           A      +     ++
Sbjct: 269 YRRADGTY---CQLEWRARR------CGDLVFGVARDVTERLRIEAEMAEARRAAETANK 319

Query: 210 IKKGHSSVEKEKYD-----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256
            K    +    +       +    +      +  + + + +      + L+ 
Sbjct: 320 AKNDFLANMSHEIRTPLNGVIGIAAALGETALTPRQAEMVDLIRRSGETLER 371


>gi|153825882|ref|ZP_01978549.1| sensor histidine kinase FexB [Vibrio cholerae MZO-2]
 gi|149740380|gb|EDM54511.1| sensor histidine kinase FexB [Vibrio cholerae MZO-2]
          Length = 785

 Score =  321 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 87/387 (22%), Positives = 165/387 (42%), Gaps = 19/387 (4%)

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
            +E E       + ++      L S ++A+ D I   N +G     NRA+ +L G    +
Sbjct: 135 DLENEVYQREKTQVELAERTALLRSFIDASPDLIYYRNAKGEFSGCNRAMEELTGKRESE 194

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
           ++         +     +     ++ + +   T E+        +    LR +       
Sbjct: 195 LVGLTPWDVYRKEIAQSIVETDQQVFNNNTAITYEQWLEYPDGRKSFFELRKVPFYNKDG 254

Query: 552 S--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                     DI+E K+ +  L       EK S  K+ F++ +SHE+RTPL  I+G S +
Sbjct: 255 RHLGLVGFGRDITERKRHEESL-------EKASRDKTTFISTISHELRTPLNGIVGLSRM 307

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           + +            ++   I+ S   + +I ND++D+ K +  K+ L    ++ +E V+
Sbjct: 308 LLDTPLSG----EQRKHLQTINVSAVTLGNIFNDIIDMDKFDRRKLELFPAALNFEEFVA 363

Query: 670 EAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI-II 727
           E   L  L A +K +        ++P  +  D   ++Q+  N+LSNA+ FT  GG +  +
Sbjct: 364 EIEVLAALMAEQKGLRFDLERLTDLPSLVEVDSTRLRQVLWNLLSNAMKFTKEGGVVMTV 423

Query: 728 STTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGEGTGLGLPLAKAMV 785
           S    +   E+ + V DTG+G+   E EK    + Q+ + +      GTG+GL +++ ++
Sbjct: 424 SAECDAQHAEITIEVEDTGIGIPEAEQEKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLI 483

Query: 786 DANMGKFYIFSTPAKGTLIEIIF--PL 810
               G   + S    G+   +    PL
Sbjct: 484 KLMGGDISVNSEEGFGSTFTVTIRVPL 510



 Score = 45.0 bits (105), Expect = 0.054,   Method: Composition-based stats.
 Identities = 16/128 (12%), Positives = 34/128 (26%), Gaps = 3/128 (2%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           +A G     +  + +  G    +++G+   DV               +   NT       
Sbjct: 172 NAKGEFSGCNRAMEELTGKRESELVGLTPWDVYRKEIAQSIVETDQQVFNNNTAITYE-Q 230

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
           W           +L  +P Y+++    G  GFG               ++  +  +    
Sbjct: 231 WLEYPDGRKSFFELRKVPFYNKDGRHLGLVGFG--RDITERKRHEESLEKASRDKTTFIS 288

Query: 210 IKKGHSSV 217
                   
Sbjct: 289 TISHELRT 296


>gi|254226158|ref|ZP_04919754.1| sensor histidine kinase FexB [Vibrio cholerae V51]
 gi|125621326|gb|EAZ49664.1| sensor histidine kinase FexB [Vibrio cholerae V51]
          Length = 785

 Score =  321 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 87/387 (22%), Positives = 165/387 (42%), Gaps = 19/387 (4%)

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
            +E E       + ++      L S ++A+ D I   N +G     NRA+ +L G    +
Sbjct: 135 DLENEVYQREKTQVELAERTALLRSFIDASPDLIYYRNAKGEFSGCNRAMEELTGKRESE 194

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
           ++         +     +     ++ + +   T E+        +    LR +       
Sbjct: 195 LVGLTPWDVYRKEIAQSIVETDQQVFNNNTAITYEQWLEYPDGRKSFFELRKVPFYNKDG 254

Query: 552 S--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                     DI+E K+ +  L       EK S  K+ F++ +SHE+RTPL  I+G S +
Sbjct: 255 RHLGLVGFGRDITERKRHEESL-------EKASRDKTTFISTISHELRTPLNGIVGLSRM 307

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           + +            ++   I+ S   + +I ND++D+ K +  K+ L    ++ +E V+
Sbjct: 308 LLDTPLSG----EQRKHLQTINVSAVTLGNIFNDIIDMDKFDRRKLELFPAALNFEEFVA 363

Query: 670 EAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI-II 727
           E   L  L A +K +        ++P  +  D   ++Q+  N+LSNA+ FT  GG +  +
Sbjct: 364 EIEVLAALMAEQKGLRFDLERLTDLPSLVEVDSTRLRQVLWNLLSNAMKFTKEGGVVMTV 423

Query: 728 STTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGEGTGLGLPLAKAMV 785
           S    +   E+ + V DTG+G+   E EK    + Q+ + +      GTG+GL +++ ++
Sbjct: 424 SAECDAQHAEITIEVEDTGIGIPEAEQEKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLI 483

Query: 786 DANMGKFYIFSTPAKGTLIEIIF--PL 810
               G   + S    G+   +    PL
Sbjct: 484 KLMGGDISVNSEEGFGSTFTVTIRVPL 510



 Score = 45.0 bits (105), Expect = 0.054,   Method: Composition-based stats.
 Identities = 16/128 (12%), Positives = 34/128 (26%), Gaps = 3/128 (2%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           +A G     +  + +  G    +++G+   DV               +   NT       
Sbjct: 172 NAKGEFSGCNRAMEELTGKRESELVGLTPWDVYRKEIAQSIVETDQQVFNNNTAITYE-Q 230

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
           W           +L  +P Y+++    G  GFG               ++  +  +    
Sbjct: 231 WLEYPDGRKSFFELRKVPFYNKDGRHLGLVGFG--RDITERKRHEESLEKASRDKTTFIS 288

Query: 210 IKKGHSSV 217
                   
Sbjct: 289 TISHELRT 296


>gi|317152599|ref|YP_004120647.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316942850|gb|ADU61901.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 876

 Score =  321 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 114/836 (13%), Positives = 247/836 (29%), Gaps = 114/836 (13%)

Query: 70  SENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM-IGMRLCDVSDILHID 128
               +         +  + +D  G    ++    K  G  A  +  G+ L  +     I 
Sbjct: 49  DGERYRQMVDGLP-QIVYEMDLEGRFVYVNAFALKRFGFTAQDVATGLYLHQILHPDSIG 107

Query: 129 PNNH-IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187
                +   L+       +      +GT+  + +    +     +   +G RG  I    
Sbjct: 108 RARAGMARTLRGTGANGEEYIAVCKDGTSFPIKVYSQGVF---SDGHATGVRGVVI--DI 162

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ---SPPPHLRMKNKVSSLT 244
                      + +  +  + E       +      +                  V+  T
Sbjct: 163 TDTKRAEEALYQSENYYRTIFEHTGTAMIIFGADAVVHRCNSQFETLTGYTADEIVNRKT 222

Query: 245 EYYAHKDDVLKTEK----YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF 300
                  + L+  +       +         +    T + ++     +   +        
Sbjct: 223 WDIFVAPEDLERVRGFNRQRRMQDPSVPSDYEMTILTKDGDRKLAHLFVQAIPRTDDMVC 282

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDD 359
             +             + E              + +       + +  +  +  Y+  + 
Sbjct: 283 SLIDITARHRTERALRDSEKRYELVARGANDGIWDWDLQTDTIFYSARYREMLGYEEAEF 342

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
                   +  +A    D   I       ++          + ++        +      
Sbjct: 343 ---PNTSDSWKNAIHPDDLEPILAANRTCTEGGTDQFEVE-YRLRHKDGTYRWVLGRGAS 398

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEI---------EVMQLCSILEATSDGIAIINR 470
             ++  E     G   +  + ++++R  +              L ++ E     I     
Sbjct: 399 ARDERGEVYRLAGTHTDITERKLSERTTQAMYAISKAISTTDNLQALYETIH-AIL---- 453

Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFT------VFLEQNTPSVMNHYLTEILSLDLRQT 524
            G ++        L+  P + +    F         +   +          IL       
Sbjct: 454 -GQVIDATNFFIALYDEPGDRVAFAYFADDKDELYDIRNVSDPNTRGLTVHILRTGRPLF 512

Query: 525 L---------EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH----------DIS--- 562
           +             +G       + L + +K    +       H          D+S   
Sbjct: 513 ISQADPIPPENARNIGIVGTPAAVWLGVPLKLKGRTMGAMAVQHYTNPRHYTDADVSFLE 572

Query: 563 ----------EWKQEKNKLSHA-------------------------KKIAEKESSHKSD 587
                     E K  + +L+                            +   +  + KS 
Sbjct: 573 AVSEQVALAIERKSNEEELTRFSEDLEDMVELRTTELQVQASELESANQRLTELDTIKSA 632

Query: 588 FLARVSHEIRTPLTAIIGFSE-----------VIKNQRFGPLGNPRYIEYANYIDRSGNL 636
            ++ +SHE+RTPLT+I GF++            +           R  +    I+  G  
Sbjct: 633 LVSSISHELRTPLTSIRGFAKLTRKEFVRHFLPLAESPLAEAKGERIRQNLGIIETEGER 692

Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR-ILIRTSFANNIP 695
           +  ++ND LDI++IESGK+  + + ++  E V +A + +      +  I ++ S    +P
Sbjct: 693 LTRLINDFLDINRIESGKVVWNDQFLNPCEVVHQAANALAGALAARPAIKLKLSLPPTVP 752

Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755
            I AD   V+Q+ +N+L+NA  FT  G  I IS T   +  + + V DTG+G+   +   
Sbjct: 753 LIHADPDKVQQVLINLLNNACKFTAEGF-IKISVTGNVD-SLTITVSDTGMGIGPEDQPN 810

Query: 756 AMKPFGQIPNSQQIRGE--GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             + F +      +  E  GTGLGL + K +V+   G  ++ ST  +G+      P
Sbjct: 811 IFEKFYKARAGDTLVAEARGTGLGLSICKEIVEHYGGSIWVDSTLGQGSAFSFTLP 866



 Score =  117 bits (292), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 38/295 (12%), Positives = 84/295 (28%), Gaps = 9/295 (3%)

Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFL 349
            L          L     P      D       + VD  P   +     G   Y N   L
Sbjct: 22  ELIAELAALRACLGAVLTPGQPPVSDPDGERYRQMVDGLPQIVYEMDLEGRFVYVNAFAL 81

Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
               + + D        + L     L  ++  +             A+   +        
Sbjct: 82  KRFGFTAQDV------ATGLYLHQILHPDSIGRARAGMARTLRGTGANGEEYIAVCKDGT 135

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469
           S  +                  G+  +  DT+  +  +        +I E T   + I  
Sbjct: 136 SFPIKVYSQGVF-SDGHATGVRGVVIDITDTKRAEEALYQSENYYRTIFEHTGTAMIIFG 194

Query: 470 REGIILSTNRAVSKLFGYPVEDILRK-PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528
            + ++   N     L GY  ++I+ +  + +F+       +  +  +    D     +  
Sbjct: 195 ADAVVHRCNSQFETLTGYTADEIVNRKTWDIFVAPEDLERVRGFNRQRRMQDPSVPSDYE 254

Query: 529 TLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
               TK+       + ++ +P +     ++ DI+   + +  L  ++K  E  + 
Sbjct: 255 MTILTKDGDRKLAHLFVQAIPRTDDMVCSLIDITARHRTERALRDSEKRYELVAR 309


>gi|223938486|ref|ZP_03630379.1| PAS/PAC sensor signal transduction histidine kinase [bacterium
           Ellin514]
 gi|223892905|gb|EEF59373.1| PAS/PAC sensor signal transduction histidine kinase [bacterium
           Ellin514]
          Length = 392

 Score =  321 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 82/410 (20%), Positives = 179/410 (43%), Gaps = 26/410 (6%)

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459
           L +I      +L   +    +         +  +     +  +   ++     +  ++  
Sbjct: 5   LLSIVIAGAVALHFWWRHRYRRLLEEIAREKQSLSDAQREHGL---EITQRKAEQQALFN 61

Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL 519
           + ++G+ I++  G +   N+++ + F    +D+  +             +          
Sbjct: 62  SMTEGVLILDHAGHVQLVNKSLQEFFSIN-KDVRGQTIMEAFR---LQELAELARRAEQE 117

Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579
            L +  E    G+      ++   +  +        +  HD++  K+ +N          
Sbjct: 118 RLVKGFELELNGTNNRRLEVNAATVTGREGGQHGTIMVFHDLTRLKELENT--------- 168

Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY-IEYANYIDRSGNLVL 638
                + +F+A VSHE+RTPL+ I GF E + +   G   NP     +   I++  + + 
Sbjct: 169 -----RQEFVANVSHELRTPLSLIKGFVETLID---GAKDNPELCTRFLGTIEKHTDRLT 220

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
            ++ DLL ISK+ESG++ ++   V+L+  V  A+  +Q  A+ K + ++ + A ++ +  
Sbjct: 221 FLIEDLLTISKLESGQIVMNLNEVNLNNEVGRAVDDLQSRASGKNVKLQNTLAEDL-KAR 279

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
           AD   ++Q+  N++ NAI +  +GG + I       ++V + V+D G G+ +   E+  +
Sbjct: 280 ADADRLQQVLFNLIENAIKYGRTGGNVTIGGKALPGDKVEIWVKDDGPGIPDEARERVFE 339

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            F ++  ++     GTGLGL + K +V A+ G+ ++ S P +GT      
Sbjct: 340 RFYRVDRARSRETGGTGLGLAIVKHIVQAHGGEVWVSSEPGQGTTFYFTL 389


>gi|229173096|ref|ZP_04300647.1| hypothetical protein bcere0006_22030 [Bacillus cereus MM3]
 gi|228610429|gb|EEK67700.1| hypothetical protein bcere0006_22030 [Bacillus cereus MM3]
          Length = 801

 Score =  321 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 102/533 (19%), Positives = 211/533 (39%), Gaps = 47/533 (8%)

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVD----KCPIPFFV-YSHGNLFYANPSFLLL 351
            +  E +      +     +     T E ++           +    G++  AN ++  +
Sbjct: 294 GQVIEVVGSTVDITERKKVESELRATKELLESFIKHNVDAITISDREGHILQANKAYEKI 353

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN-RENS 410
             +   + I            P + D    + +   +   T  +   RL T++     + 
Sbjct: 354 FGWSLEEIIGKRL--------PCVPDFLMEESLKNIQKILTGESVVTRLETVRRRNDGSL 405

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK-------MEIEVMQLCSILEATSD 463
           L ++       +     +  + I  +  + +  +R+       ++   M+  +++E  +D
Sbjct: 406 LDVSLTVSPILDVRGNVIALSAICRDISERKQAERERHRLHQQLKDSEMKYRALIEQATD 465

Query: 464 GIAIINREG-----IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
            + ++           +  N    K FGY  +++L  PF   + Q++  ++   L +I  
Sbjct: 466 AVYVVELNENYVPSRFIEVNPVGCKRFGYSRDELLSLPFPNVVPQDSKMIVR-LLEKIRE 524

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578
                TL+      T +       + +  L     +     DI+E  + +  L  ++K+A
Sbjct: 525 GQTSFTLQDEYAFPTGKIITTEFSVRVFNLNGKKVFLSISRDITERLKTEELLRKSEKLA 584

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
                        ++HEI  PLTA+ GF +++K+             Y N +      + 
Sbjct: 585 VV-----GQLATAMAHEINNPLTAMKGFMQLLKSTE-----TENNQGYINIVSSEIERIE 634

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
            I N+ + ++K +     L  +P  +   + + + L+Q  A    I IR  F   IP I 
Sbjct: 635 SITNEFMAVAKPQ----VLKIQPNDISVLMDQVLMLLQPQAMMNNIKIRIDFTPGIPLIP 690

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
            +   +KQ+ +NI+ NAI   P+GG+I+I      N ++ +R  D G G+    +    +
Sbjct: 691 CEGNQLKQVFVNIIKNAIESMPTGGEILIQFDKLDNNQIRIRFIDQGCGIPKERIPYLGE 750

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
           PF        I+ EG GLGL +   +++ + GK +I S   KGT++E+  P++
Sbjct: 751 PFY------SIKEEGIGLGLMVCYKIIETHQGKVFIESEVNKGTIVEVTLPIW 797



 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 42/280 (15%), Positives = 88/280 (31%), Gaps = 20/280 (7%)

Query: 313 AYFDEGENLTPETVDKCPIPFF----VYSHGNLFYANPSFLLLTKYKSVDDIEI-AGGLS 367
               + +    +TV +     F    V  H      +  F     + S   +      + 
Sbjct: 186 RELKKSKQELTDTVHELQGGIFKFKKVGKHFIHTLCDGQFYYQKGFYSEQVVGKSLRTID 245

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
             +  P L          L   +   I        + W  + ++ +         +  + 
Sbjct: 246 ASIVPPHLVSQLMKY--YLQAWEGKEIIFE-----LPWPDDKTIILI--ALRPIKRNGQV 296

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
           +   G   +  + +  + ++      L S ++   D I I +REG IL  N+A  K+FG+
Sbjct: 297 IEVVGSTVDITERKKVESELRATKELLESFIKHNVDAITISDREGHILQANKAYEKIFGW 356

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
            +E+I+ K     +           + +IL           T+    +  LL + + +  
Sbjct: 357 SLEEIIGKRL-PCVPDFLMEESLKNIQKIL-TGESVVTRLETVRRRNDGSLLDVSLTVSP 414

Query: 548 LPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESS 583
           +               DISE KQ + +     +  +    
Sbjct: 415 ILDVRGNVIALSAICRDISERKQAERERHRLHQQLKDSEM 454



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 38/287 (13%), Positives = 82/287 (28%), Gaps = 25/287 (8%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG-KTT 148
           D  G++ + ++   K  G    ++IG RL  V D L  +   +I  +L  ++     +T 
Sbjct: 338 DREGHILQANKAYEKIFGWSLEEIIGKRLPCVPDFLMEESLKNIQKILTGESVVTRLETV 397

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +G+ L V + ++  PI              I               RL ++     
Sbjct: 398 RRRNDGSLLDVSLTVS--PILDVRGNVIALS--AICRDISERKQAERERHRLHQQLKDSE 453

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLR--------------MKNKVSSLT-EYYAHKDDV 253
              +       +   +          R               ++++ SL       +D  
Sbjct: 454 MKYRALIEQATDAVYVVELNENYVPSRFIEVNPVGCKRFGYSRDELLSLPFPNVVPQDSK 513

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
           +       +   ++S   Q+++        T +               +LS     +   
Sbjct: 514 MIVRLLEKIREGQTSFTLQDEYAFPTGKIITTEFSVRVFN--LNGKKVFLSISRDITERL 571

Query: 314 YFDEGENLTP--ETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVD 358
             +E    +     V +       +   N   A   F+ L K    +
Sbjct: 572 KTEELLRKSEKLAVVGQLATA-MAHEINNPLTAMKGFMQLLKSTETE 617


>gi|118443713|ref|YP_877290.1| sensory transduction histidine kinase [Clostridium novyi NT]
 gi|118134169|gb|ABK61213.1| sensory transduction histidine kinase [Clostridium novyi NT]
          Length = 553

 Score =  321 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 97/524 (18%), Positives = 197/524 (37%), Gaps = 42/524 (8%)

Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS--- 367
              + DE        +   P   F+  +    +AN   + L       DI     +    
Sbjct: 11  ERQFLDEDGLFYKNLMKILPDAIFLEKNEKFIFANDEAIKLLGGIDKKDILGKSVMEFLD 70

Query: 368 --------TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
                    L      SD  A +   + + +   I    +                    
Sbjct: 71  EKFQKTEEELYGETVESDKEATREKRIVKLNGEVIDVEVKSMYFSPEESY---------- 120

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
                 E+  +  I  +    +  ++ ++        + E     + I +  G I   N+
Sbjct: 121 ------EDKIKIVIVRDITKRKKYEKALKESECLHRKLTELLPMAVCIYD-YGKIEFANK 173

Query: 480 AVSKLFGY-PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
             + + G    ++++ K    F+ +         L +I     +               +
Sbjct: 174 KCADILGVKDKDELINKSAFDFIYEKNIESSKVQLKKIEDHADKILPPFHNRAICVNGNV 233

Query: 539 LSLRIIIKKLPFSSCY--SLTMHDISE------WKQEKNKLSHAKKIAEKESSHKSDFLA 590
           + +      L   +         DI+E       KQ+  +     +   + +  +++F A
Sbjct: 234 IDIETWSTTLCDETGVKILTVFRDITEYLQLQKIKQKAEENRILLEKEREFNRIRTEFFA 293

Query: 591 RVSHEIRTPLTAIIG----FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
            +SHE++TPL  I+G     S  ++N     + + +  +    + ++ N +L ++N+++D
Sbjct: 294 NLSHELKTPLNIILGSQQLLSLYLQNLDECNVNSQKIKQNLKILKQNSNRLLRLINNIID 353

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706
           I+ I SG   ++ +  ++   + +    V  YA  K I +           L D   +++
Sbjct: 354 ITIINSGLFAMNLKNRNIVSIIEDITLSVVDYAKNKDIKVIFDTDTEEKITLCDEEKIER 413

Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
           I LN+LSNA+ FTP GG+I ++  H   +++ + VRD G+G+   ++      F Q+  S
Sbjct: 414 IILNLLSNAVKFTPKGGKIKVNI-HDDGDKLRITVRDNGIGIPEDKIHMIFDRFTQVDKS 472

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
                EG+G+GL L KA+V+ + GK  + S   KG+   I  P+
Sbjct: 473 FTRSTEGSGIGLYLVKALVEMHNGKVSVESVYGKGSEFIIDLPV 516



 Score = 48.5 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 11/122 (9%), Positives = 34/122 (27%)

Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
            ++++          +       + +   I++   +          +  +          
Sbjct: 76  TEEELYGETVESDKEATREKRIVKLNGEVIDVEVKSMYFSPEESYEDKIKIVIVRDITKR 135

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
                   E E L  +  +  P+   +Y +G + +AN     +   K  D++        
Sbjct: 136 KKYEKALKESECLHRKLTELLPMAVCIYDYGKIEFANKKCADILGVKDKDELINKSAFDF 195

Query: 369 LL 370
           + 
Sbjct: 196 IY 197


>gi|149180956|ref|ZP_01859457.1| two-component sensor histidine kinase [Bacillus sp. SG-1]
 gi|148851240|gb|EDL65389.1| two-component sensor histidine kinase [Bacillus sp. SG-1]
          Length = 607

 Score =  321 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 87/395 (22%), Positives = 171/395 (43%), Gaps = 26/395 (6%)

Query: 426 ENMPQNGIEPEDVDTRINKRKM--EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           + + Q  I   ++  R+ + +   E E  +L S+L   +DG+   +R+G ++  N   +K
Sbjct: 235 DEIGQLAITFNNLTKRLQEAQATTEGERRKLSSVLSYMTDGVIATDRKGRVILINDPAAK 294

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +     E +L +P    L  +          E  S+ L  + ++               +
Sbjct: 295 MLNVSRETVLSQPLVSLLGLDENYTFEDLSNEQDSIILDYSTKEQPYILRAN-----FSV 349

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
           I K+  F +     +HDI+E ++   +              + DF++ VSHE+RTPLT +
Sbjct: 350 IQKETGFVNGIITVLHDITEQEKIDME--------------RRDFVSNVSHELRTPLTTM 395

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
             + E +    +          + +        ++ +VNDLL +SK++S     + E + 
Sbjct: 396 RSYLEALAEGAWQ--DEEIAPRFLSVTQDETERMIRLVNDLLQLSKMDSKDYRFNKEWIE 453

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
                 + I   +  +  + +  +         +  D   + Q+  NI+SNA+ ++P GG
Sbjct: 454 FVGFFHQIIDRFE-MSKNQNVTFKRQLPKTALFVEIDKDKLTQVLDNIISNALKYSPEGG 512

Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
            I  +     ++ +++ V D G+G+    L K  + F ++  ++  +  GTGLGL +AK 
Sbjct: 513 LIAFNV-VEKDKMIVVSVSDQGLGIPQDNLSKIFERFYRVDKARSRQMGGTGLGLAIAKE 571

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
           M+ A+ G  +  S   KGT I    P YD++   +
Sbjct: 572 MISAHGGNIWAESKEGKGTTISFSLP-YDSTQEDE 605


>gi|71909457|ref|YP_287044.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
 gi|71849078|gb|AAZ48574.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
          Length = 860

 Score =  321 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 89/390 (22%), Positives = 167/390 (42%), Gaps = 32/390 (8%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
             ++      L +I + +   I +++  G I+  N  ++ ++  P+ +++   +   +  
Sbjct: 322 ASRLGERERMLRTIFDTSDGAIFLVDPAGKIVLANERMATMWDVPLAELVGSEYVSLIHP 381

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMH 559
                    + ++++ ++   +        ++  +    +  ++L             + 
Sbjct: 382 AEREFGRERMLKLMASEIP-FVRLEREYVKRDGTVFWGFLCGRRLLDEQGKFVGLVGLIA 440

Query: 560 DISEWKQEKNKLSHAKK------------------IAEKESSHKSDFLARVSHEIRTPLT 601
           DI E K+   +L   ++                   AE  +  KS FLA +SHEIRTP+ 
Sbjct: 441 DIDEPKRNARELETYRQHLEDLVRERTAQLEGAKDAAELANRAKSAFLANMSHEIRTPMN 500

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           AI+GF+ +++     P    +  +  + I  S   +L I+ND+LDISKIESGK+ L  +P
Sbjct: 501 AIVGFAHLLRRDGVTP----KQADRLDKIMGSAEHLLAIINDVLDISKIESGKLVLEAKP 556

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
             + + V   + L    A  K +  RT      P ++ D   + Q  LN + NAI FT +
Sbjct: 557 FRVVDVVERLVGLCAERAQSKGLAFRTMVGALPPVLVGDCTRLSQALLNYVGNAIKFTEA 616

Query: 722 GGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
           G  I +       +     V   V+DTG+G+    L +  +PF Q  NS   +  GTGLG
Sbjct: 617 G-TITLRAEVLEEDAHSLLVRFEVQDTGIGIAGDVLSRLFRPFEQADNSTTRKYGGTGLG 675

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           L +   + +   G+  + S    G+   + 
Sbjct: 676 LAITLRLAELMGGQAGVDSEAGVGSTFWLT 705



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/265 (9%), Positives = 68/265 (25%), Gaps = 11/265 (4%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID-PNNHIGDLLKRQNTWY 144
            + +D  G +   +E +         +++G     +      +     +  L+  +  + 
Sbjct: 343 IFLVDPAGKIVLANERMATMWDVPLAELVGSEYVSLIHPAEREFGRERMLKLMASEIPFV 402

Query: 145 GKTTLW-PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                +   +GT       L    +     +F G    G++             +   + 
Sbjct: 403 RLEREYVKRDGT--VFWGFLCGRRLLDEQGKFVGL--VGLIADIDEPKRNARELETYRQH 458

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV----SSLTEYYAHKDDVLKTEKY 259
              L   +       K+  ++ ++        M +++    +++  +         T K 
Sbjct: 459 LEDLVRERTAQLEGAKDAAELANRAKSAFLANMSHEIRTPMNAIVGFAHLLRRDGVTPKQ 518

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
                +     E       ++   +K +    +          +  R     +       
Sbjct: 519 ADRLDKIMGSAEHLLAIINDVLDISKIESGKLVLEAKPFRVVDVVERLVGLCAERAQSKG 578

Query: 320 NLTPETVDKCPIPFFVYSHGNLFYA 344
                 V   P P  V     L  A
Sbjct: 579 LAFRTMVGALP-PVLVGDCTRLSQA 602


>gi|15642366|ref|NP_231999.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|121588205|ref|ZP_01677949.1| sensor histidine kinase FexB [Vibrio cholerae 2740-80]
 gi|153819138|ref|ZP_01971805.1| sensor histidine kinase FexB [Vibrio cholerae NCTC 8457]
 gi|153822770|ref|ZP_01975437.1| sensor histidine kinase FexB [Vibrio cholerae B33]
 gi|227082493|ref|YP_002811044.1| sensor histidine kinase FexB [Vibrio cholerae M66-2]
 gi|229507565|ref|ZP_04397070.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae BX
           330286]
 gi|229512239|ref|ZP_04401718.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae
           B33]
 gi|229519375|ref|ZP_04408818.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae
           RC9]
 gi|229607071|ref|YP_002877719.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae
           MJ-1236]
 gi|254849491|ref|ZP_05238841.1| sensor histidine kinase FexB [Vibrio cholerae MO10]
 gi|255746952|ref|ZP_05420897.1| aerobic respiration control sensor protein ArcB [Vibrio cholera
           CIRS 101]
 gi|262161504|ref|ZP_06030614.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae
           INDRE 91/1]
 gi|9656939|gb|AAF95512.1| sensor histidine kinase FexB [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121547547|gb|EAX57650.1| sensor histidine kinase FexB [Vibrio cholerae 2740-80]
 gi|126510328|gb|EAZ72922.1| sensor histidine kinase FexB [Vibrio cholerae NCTC 8457]
 gi|126519715|gb|EAZ76938.1| sensor histidine kinase FexB [Vibrio cholerae B33]
 gi|227010381|gb|ACP06593.1| sensor histidine kinase FexB [Vibrio cholerae M66-2]
 gi|229344064|gb|EEO09039.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae
           RC9]
 gi|229352204|gb|EEO17145.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae
           B33]
 gi|229355070|gb|EEO19991.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae BX
           330286]
 gi|229369726|gb|ACQ60149.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae
           MJ-1236]
 gi|254845196|gb|EET23610.1| sensor histidine kinase FexB [Vibrio cholerae MO10]
 gi|255735354|gb|EET90754.1| aerobic respiration control sensor protein ArcB [Vibrio cholera
           CIRS 101]
 gi|262028815|gb|EEY47469.1| aerobic respiration control sensor protein ArcB [Vibrio cholerae
           INDRE 91/1]
          Length = 785

 Score =  321 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 87/387 (22%), Positives = 165/387 (42%), Gaps = 19/387 (4%)

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
            +E E       + ++      L S ++A+ D I   N +G     NRA+ +L G    +
Sbjct: 135 DLENEVYQREKTQVELAERTALLRSFIDASPDLIYYRNAKGEFSGCNRAMEELTGKRESE 194

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
           ++         +     +     ++ + +   T E+        +    LR +       
Sbjct: 195 LVGLTPWDVYRKEIAQSIVETDQQVFNNNTAITYEQWLEYPDGRKSFFELRKVPFYNKDG 254

Query: 552 S--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                     DI+E K+ +  L       EK S  K+ F++ +SHE+RTPL  I+G S +
Sbjct: 255 RHLGLVGFGRDITERKRHEESL-------EKASRDKTTFISTISHELRTPLNGIVGLSRM 307

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           + +            ++   I+ S   + +I ND++D+ K +  K+ L    ++ +E V+
Sbjct: 308 LLDTPLSG----EQRKHLQTINVSAVTLGNIFNDIIDMDKFDRRKLELFPAALNFEEFVA 363

Query: 670 EAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI-II 727
           E   L  L A +K +        ++P  +  D   ++Q+  N+LSNA+ FT  GG +  +
Sbjct: 364 EIEVLAALMAEQKGLRFDLERLTDLPSLVEVDSTRLRQVLWNLLSNAMKFTKEGGVVMTV 423

Query: 728 STTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGEGTGLGLPLAKAMV 785
           S    +   E+ + V DTG+G+   E EK    + Q+ + +      GTG+GL +++ ++
Sbjct: 424 SAECDAQHAEITIEVEDTGIGIPEAEQEKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLI 483

Query: 786 DANMGKFYIFSTPAKGTLIEIIF--PL 810
               G   + S    G+   +    PL
Sbjct: 484 KLMGGDISVNSEEGFGSTFTVTIRVPL 510



 Score = 45.0 bits (105), Expect = 0.056,   Method: Composition-based stats.
 Identities = 16/128 (12%), Positives = 34/128 (26%), Gaps = 3/128 (2%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           +A G     +  + +  G    +++G+   DV               +   NT       
Sbjct: 172 NAKGEFSGCNRAMEELTGKRESELVGLTPWDVYRKEIAQSIVETDQQVFNNNTAITYE-Q 230

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
           W           +L  +P Y+++    G  GFG               ++  +  +    
Sbjct: 231 WLEYPDGRKSFFELRKVPFYNKDGRHLGLVGFG--RDITERKRHEESLEKASRDKTTFIS 288

Query: 210 IKKGHSSV 217
                   
Sbjct: 289 TISHELRT 296


>gi|160886838|ref|ZP_02067841.1| hypothetical protein BACOVA_04852 [Bacteroides ovatus ATCC 8483]
 gi|156107249|gb|EDO08994.1| hypothetical protein BACOVA_04852 [Bacteroides ovatus ATCC 8483]
          Length = 936

 Score =  321 bits (824), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 98/520 (18%), Positives = 193/520 (37%), Gaps = 31/520 (5%)

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIE 361
           L        +   D  E L        P    +Y   G L   N   L +    +  D+ 
Sbjct: 423 LDSTGSVQANRALDRSEKLFQNIFANIPAGVEIYDKDGYLIDLNNKDLEIFGVVNKSDVI 482

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                        + D    + ++ +R +    +        + NR N++ +     +  
Sbjct: 483 GVNFFENPNVPQGIRDRVRNEDLVDFRLN---YSFEQAEGYYETNRSNAIELYSKVSKLY 539

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA---IINREGIILSTN 478
           +          I  ++ +      ++         I +    G A   ++NR+G  +   
Sbjct: 540 DNEGNFSGYILISIDNTERIDAMNRIRDFENFFLMISDYAKVGYAKLNLLNRKGYAI--- 596

Query: 479 RAVSKLFGYPVEDILRKPF--TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
           +   K  G   + +L +       +          +  E+     R+  +          
Sbjct: 597 KQWYKNLGEEEDTLLDEVVGVYTHMHPEDRKRFLDFYDEVR-DGKRRHFQGEMRIRRPGT 655

Query: 537 K--LLSLRIIIK-----KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
           K     +   +                  +DI+E K+ + +L  A+  AE     KS FL
Sbjct: 656 KNEWNWVSSNVMVTNYKPEENEIEIIGINYDITELKETEAELIQARDKAEMMDRLKSAFL 715

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
           A +SHEIRTPL AI+GFS+++              EY   +  + +L+L +++D+LD+SK
Sbjct: 716 ANMSHEIRTPLNAIVGFSDLLVETEELS----ERQEYIKIVRENNDLLLQLISDILDLSK 771

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709
           IE+G        V ++    + +  + + A  + + +       +  +++D   + Q+  
Sbjct: 772 IEAGTFEFTSGDVDVNLLCEDIVRSMGMKAKGE-VELVLDNHLPVCHVISDRNRIHQVIS 830

Query: 710 NILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
           N ++NA+ FT  G  I +        E+   V DTG+G+   +L    + F ++ +    
Sbjct: 831 NFVNNAMKFTSEGS-IHVGYKLKD-GELEFYVEDTGIGIEKEQLPHIFERFVKLNSFVH- 887

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
              GTGLGL + +++V+   G+  + S   KG+      P
Sbjct: 888 ---GTGLGLSICQSIVEQLGGRIGVDSEKGKGSRFWFTIP 924



 Score = 47.7 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 22/152 (14%), Positives = 50/152 (32%), Gaps = 6/152 (3%)

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG-YP 488
             G+  +   +    R ++       +I      G+ I +++G ++  N    ++FG   
Sbjct: 418 IVGLFLDSTGSVQANRALDRSEKLFQNIFANIPAGVEIYDKDGYLIDLNNKDLEIFGVVN 477

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK-ITLGSTKEEKLLSLRIIIKK 547
             D++   F                 +++   L  + E+      T     + L   + K
Sbjct: 478 KSDVIGVNFFENPNVPQGIRDRVRNEDLVDFRLNYSFEQAEGYYETNRSNAIELYSKVSK 537

Query: 548 LPFSS----CYSLTMHDISEWKQEKNKLSHAK 575
           L  +      Y L   D +E     N++   +
Sbjct: 538 LYDNEGNFSGYILISIDNTERIDAMNRIRDFE 569


>gi|91201123|emb|CAJ74182.1| conserved hypothetical protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 1110

 Score =  321 bits (824), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 100/404 (24%), Positives = 176/404 (43%), Gaps = 49/404 (12%)

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
           +E  +M    +L+ + D I   + EG I+  ++   K+ GY   +I  K  +        
Sbjct: 271 LEASLMYFQGMLDDSGDIIITTDCEGNIVKFSKGGEKILGYKEHEIRGKKCSELYVNKGE 330

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDIS 562
               + L  +            T    K+   + + + I +L   +           DI+
Sbjct: 331 RT--NILEALR--GKSSLSNYETTLLKKDNTPVDISLTISELRDKTGNVIGTVGISKDIT 386

Query: 563 EWKQEKNKLSH-------------------------AKKIAEKESSHKSDFLARVSHEIR 597
           E K+ K +L                             +   + +  K  F+A  SHE+R
Sbjct: 387 EEKRMKGELEKKNKELEELTNNLEEKVLERTNALEKMNRELVRANELKGRFIANASHELR 446

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TPL +IIGFSE++  + FG L   +   Y N I  S   +L +VN++LD++KI++GK  +
Sbjct: 447 TPLHSIIGFSEILLQKTFGDLT-EKQQRYLNTIFGSAKHLLYLVNNILDLAKIDAGKAEI 505

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
            ++   +   + E + +++  A+ K I+  T   +++    AD    KQI  N++SNAI 
Sbjct: 506 SYQTFPVKSVIDEVLVVIRPLADRKMIVPETVVHHDV-YFTADKIKFKQILYNLISNAIK 564

Query: 718 FTPSGGQIIISTTH------------TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           FT   G + I+                S E + + V DTG+G+   + E+  + F QI +
Sbjct: 565 FTADSGNVGIAIEKIISDKKTFPWVTESQEFLKVSVWDTGIGIKPEDRERIFEEFEQIDS 624

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           S+    EGTGLGL L K +V+ + G   +     +G++  +  P
Sbjct: 625 SKS--TEGTGLGLSLTKKLVEIHGGHITVEGIYGQGSVFNVYMP 666



 Score = 46.2 bits (108), Expect = 0.022,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 52/124 (41%), Gaps = 7/124 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG-KT 147
            D  G + + S+   K +G    ++ G +  ++   ++     +I + L+ +++    +T
Sbjct: 292 TDCEGNIVKFSKGGEKILGYKEHEIRGKKCSEL--YVNKGERTNILEALRGKSSLSNYET 349

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF--GIVHVNRVDNDPRALGKRLDKKFS 205
           TL   + T + + + ++ L    +     G  G    I    R+  +     K L++  +
Sbjct: 350 TLLKKDNTPVDISLTISEL--RDKTGNVIGTVGISKDITEEKRMKGELEKKNKELEELTN 407

Query: 206 HLHE 209
           +L E
Sbjct: 408 NLEE 411


>gi|325288684|ref|YP_004264865.1| multi-sensor signal transduction histidine kinase [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324964085|gb|ADY54864.1| multi-sensor signal transduction histidine kinase [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 584

 Score =  321 bits (823), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 85/400 (21%), Positives = 168/400 (42%), Gaps = 30/400 (7%)

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
                 ++    +    +       + N  ++  E  ++ +IL   SDG+  ++ EG ++
Sbjct: 211 QRVTVQSRDEMGVLGTSLNYLSEQLKKNMTELSYEKEKIENILIGMSDGVITVDIEGRVV 270

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
             N     L      +   +      +    + ++   + +L+   +   E +       
Sbjct: 271 LINPQAKHLLNMSNLEKNSR----IDKDENLARLSSLFSGVLAQKEQAKEEIMI-----N 321

Query: 536 EKLLSLRIIIKKLPFS---SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
           EK L++R+     P     +     + D +   + +                + DF+A V
Sbjct: 322 EKNLTVRLSPLFDPSQLILTGVIAVLQDTTREYKLE--------------QMRRDFVANV 367

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHE+RTP++ I G++E + +         +  ++   I    N +  +V DLL++S+++S
Sbjct: 368 SHELRTPISLIQGYAEALADHVEDSPV--QQDQFMKIIIEESNRLKRLVEDLLELSRLQS 425

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712
           GK +L  E ++L +   +          ++ I  +     +   + AD    +QI LN++
Sbjct: 426 GKADLEKEEINLFQVSEQVKEKYDQLFIQRNIKFKAEINQDAGTVWADKFMFEQIVLNLI 485

Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
            NAI + P GG I +++  T    + L + DTG G++  +L    + F +   S+     
Sbjct: 486 DNAICYAP-GGTITLTSARTQKG-IELCLSDTGKGISEEDLPYLFERFYRADKSRNRESG 543

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
           GTGLGL + K +V A+ G   + S   KGT   + FP  D
Sbjct: 544 GTGLGLSIVKNLVQAHGGIISVESEAGKGTKFSLKFPFQD 583


>gi|237712224|ref|ZP_04542705.1| two-component system sensor histidine kinase [Bacteroides sp.
           9_1_42FAA]
 gi|229453545|gb|EEO59266.1| two-component system sensor histidine kinase [Bacteroides sp.
           9_1_42FAA]
          Length = 730

 Score =  321 bits (823), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 105/513 (20%), Positives = 203/513 (39%), Gaps = 24/513 (4%)

Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDI 360
            L      S      +   +    +DK        S  G L YAN  F+     K     
Sbjct: 91  VLIMCRDISERVATQQNLEIFKRVLDKVSDSILAVSVDGTLVYANRQFIEEYGVKEELGT 150

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
           +    L   L+  ++ D    +     R +    A  A+   +    E  L +  +    
Sbjct: 151 QKVYDLPVSLNTKEIFDKRVQEI----RDNGGNFAYRAKYTRV---GETKLRVHQVSAFM 203

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR--EGIILSTN 478
                E M       +  D   N+ ++      + +IL      + + +   +   L  N
Sbjct: 204 IQNQGEEMIWFFT-QDITDVIKNRDELRELNYLMDAILNNIPVYLFVKDPEDDFRYLYWN 262

Query: 479 RAVSKLFGYPVEDILRK-PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
           +A +     P    L    F VF E       +    E++    R  +++  + +T E +
Sbjct: 263 KAFASHSKIPASKALGHIDFEVFPEHENAEKFHRDDLELIRTRERMEMQETYVTATGETR 322

Query: 538 LLSLRIIIKKLPFSSC-YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
           ++     +  L   +        DI+  +  + +L  A+  AE+    K+ FLA +SHEI
Sbjct: 323 IVQTLKTLVPLEGRAPLIIGISWDITNMQNIEQELVQARIKAEQSDRLKTAFLANMSHEI 382

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTPL AI+GFS ++         + +   Y++ I+++  ++L ++ND+LD++KIE+G + 
Sbjct: 383 RTPLNAIVGFSRLM--TMADNAADEKL--YSDIINQNSEILLQLINDILDLAKIEAGTLE 438

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716
               P+ L E       + +       +++     +    I  D   + Q+  N+++NAI
Sbjct: 439 YVRYPMDLGELCRNVYEMHKDRVQT-GVVLILDNKDTSLIINEDQNRIMQVVTNLITNAI 497

Query: 717 HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
            FT  G +I           +   V+DTG+G++  +++   + F ++        +GTGL
Sbjct: 498 KFTFKG-EIRFGFEVRKE-YIDFYVKDTGMGISEEKIKMIFERFVKLNTF----VQGTGL 551

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GL + + +V+   G+    S   +G+      P
Sbjct: 552 GLAICRVIVEKLGGEITAESKLNEGSTFRFTIP 584



 Score = 43.5 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 19/123 (15%), Positives = 37/123 (30%), Gaps = 5/123 (4%)

Query: 461 TSDGIAIINREGI-ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL 519
             D + + N E   I   +   +   G    D         + +     +++ L + ++ 
Sbjct: 1   MPDMLTVFNHEETGIEVVSNEETNHVGVSNNDFKGMRMQDMVPKEAYHNIHNNLQKAIAT 60

Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579
               T          +  L      I  L       +   DISE    +  L   K++ +
Sbjct: 61  GRGSTAHHEL---DVDGTLHYYENRIFPL-DEEYVLIMCRDISERVATQQNLEIFKRVLD 116

Query: 580 KES 582
           K S
Sbjct: 117 KVS 119


>gi|229102993|ref|ZP_04233682.1| hypothetical protein bcere0019_21450 [Bacillus cereus Rock3-28]
 gi|228680408|gb|EEL34596.1| hypothetical protein bcere0019_21450 [Bacillus cereus Rock3-28]
          Length = 801

 Score =  321 bits (823), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 103/532 (19%), Positives = 210/532 (39%), Gaps = 47/532 (8%)

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVD----KCPIPFFV-YSHGNLFYANPSFLLL 351
            +  E +      +     +     T E ++           +    G++  AN ++  +
Sbjct: 294 GQVIEVVGSTVDITERKKVESELRATKELLESFIKHNVDAITISDREGHILQANKAYEKI 353

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN-RENS 410
             +   + I            P + D    + +   +   T  +   RL T++     + 
Sbjct: 354 FGWSLEEIIGKRL--------PCVPDFLMEESLENIQKILTGESVVTRLETVRRRNDGSL 405

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK-------MEIEVMQLCSILEATSD 463
           L ++       +     +  + I  +  + +  +R+       ++   M+  +++E  +D
Sbjct: 406 LDVSLTVSPILDVRGNVIALSAICRDISERKQAERERHQLHQQLKDSEMKYRALIEQATD 465

Query: 464 GIAIINREG-----IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
            + ++           +  N    K FGY  E++L  PF   + Q++  ++   L +I  
Sbjct: 466 AVYVVELNENYVPSRFIEVNPVGCKRFGYSREELLSLPFPNVVPQDSKMIVR-LLEKIRE 524

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578
                TL+      T +       + +  L     +     DI+E  + +  L  ++K+A
Sbjct: 525 GQTSFTLQDEYAFPTGKIITTEFSVRVFNLNGKKVFLSISRDITERLKTEELLRKSEKLA 584

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
                        ++HEI  PLTA+ GF +++K+             Y N +      + 
Sbjct: 585 VV-----GQLATAMAHEINNPLTAMKGFMQLLKSTE-----TENNQGYINIVSSEIERIE 634

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
            I N+ + ++K +     L  +P  +   + + + L+Q  A    I IR  F   IP I 
Sbjct: 635 SITNEFMAVAKPQ----VLKIQPNDISVLMDQVLMLLQPQAMMNNIKIRIDFTPGIPLIP 690

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
            +   +KQ+ +NI+ NAI   P+GG+I+I      N ++ +R  D G G+    +    +
Sbjct: 691 CEGNQLKQVFVNIIKNAIESMPTGGEILIQFDKLDNNQIRIRFIDQGCGIPKERIPYLGE 750

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           PF        I+ EG GLGL +   +++ + GK +I S   KGT++E+  P+
Sbjct: 751 PFY------SIKEEGIGLGLMVCYKIIETHQGKVFIESEVNKGTIVEVTLPI 796



 Score =  111 bits (278), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 42/280 (15%), Positives = 88/280 (31%), Gaps = 20/280 (7%)

Query: 313 AYFDEGENLTPETVDKCPIPFF----VYSHGNLFYANPSFLLLTKYKSVDDIEI-AGGLS 367
               + +    +TV +     F    V  H      +  F     + S   +      + 
Sbjct: 186 RELKKSKQELTDTVHELQGGIFKFKKVGKHFIHTLCDGQFYYQKGFYSEQVVGKSLRTID 245

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
             +  P L          L   +   I        + W  + ++ +         +  + 
Sbjct: 246 ASIVPPHLVSQLMKY--YLQAWEGKEIIFE-----LPWPDDKTIILI--ALRPIKRNGQV 296

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
           +   G   +  + +  + ++      L S ++   D I I +REG IL  N+A  K+FG+
Sbjct: 297 IEVVGSTVDITERKKVESELRATKELLESFIKHNVDAITISDREGHILQANKAYEKIFGW 356

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
            +E+I+ K     +           + +IL           T+    +  LL + + +  
Sbjct: 357 SLEEIIGKRL-PCVPDFLMEESLENIQKIL-TGESVVTRLETVRRRNDGSLLDVSLTVSP 414

Query: 548 LPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESS 583
           +               DISE KQ + +     +  +    
Sbjct: 415 ILDVRGNVIALSAICRDISERKQAERERHQLHQQLKDSEM 454



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/287 (12%), Positives = 81/287 (28%), Gaps = 25/287 (8%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG-KTT 148
           D  G++ + ++   K  G    ++IG RL  V D L  +   +I  +L  ++     +T 
Sbjct: 338 DREGHILQANKAYEKIFGWSLEEIIGKRLPCVPDFLMEESLENIQKILTGESVVTRLETV 397

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +G+ L V + ++  PI              I               +L ++     
Sbjct: 398 RRRNDGSLLDVSLTVS--PILDVRGNVIALS--AICRDISERKQAERERHQLHQQLKDSE 453

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLR--------------MKNKVSSLT-EYYAHKDDV 253
              +       +   +          R               + ++ SL       +D  
Sbjct: 454 MKYRALIEQATDAVYVVELNENYVPSRFIEVNPVGCKRFGYSREELLSLPFPNVVPQDSK 513

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
           +       +   ++S   Q+++        T +               +LS     +   
Sbjct: 514 MIVRLLEKIREGQTSFTLQDEYAFPTGKIITTEFSVRVFN--LNGKKVFLSISRDITERL 571

Query: 314 YFDEGENLTP--ETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVD 358
             +E    +     V +       +   N   A   F+ L K    +
Sbjct: 572 KTEELLRKSEKLAVVGQLATA-MAHEINNPLTAMKGFMQLLKSTETE 617


>gi|256829959|ref|YP_003158687.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256579135|gb|ACU90271.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 705

 Score =  321 bits (823), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 118/574 (20%), Positives = 208/574 (36%), Gaps = 33/574 (5%)

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
                D+L+ +   +    E+  PE     ++              Q   +   E L   
Sbjct: 7   QPENPDLLRRKAEEISRKNEAGSPESLATDSVE-EPSWIVHELRVHQIELEMQNEELC-- 63

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365
                 A  +E      +  D  P+ +  +   G +   N +   +      D++     
Sbjct: 64  ---RTHAELEEEHQQYLDLYDFAPVGYCTLSEQGQITATNLTATAMLGIPR-DNLIGQQI 119

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
            S + D  + +    +K +   R  R+C      L   + +     A      +  +  P
Sbjct: 120 TSFICDDDQHTFTREMKELFATRVARSC-----ELRMKKTDGVQFWACLEFVLKPCDDCP 174

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL-STNRAVSKL 484
                  +  +  D +  +  +    +   + L  +   +   + E  +    N      
Sbjct: 175 VCR---VVISDINDRKQAEIALTESELHFRN-LSNSGQALIWTSGEDTLCDYFNEPWLDF 230

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
            G  +E  L   +   +                +   R+             +   L   
Sbjct: 231 TGRTLEQELGNGWVEGVHAEDLDRCIDTYVTAFA--RREPFNMEYRLRHVSGEYRWLVDQ 288

Query: 545 IKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
                 S      Y     DI+  KQ + +L  AK  AE  +  KS FLA +SHEIRTPL
Sbjct: 289 GTPRFNSQGAFVGYIGHCLDITPRKQMEVELVAAKNAAESANKAKSAFLANMSHEIRTPL 348

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
             ++G  ++++        +     Y     RSG  +  +++D+LD+S+IE+G+M L  E
Sbjct: 349 NGLLGMMQLLETTD----TSDEQQMYIEMAIRSGGRLTRLLSDILDLSRIEAGRMPLSEE 404

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFT 719
           P +L E  S         + +KR+ +R   A ++P  +  D   V+Q+  N++ NA+ FT
Sbjct: 405 PFNLSETFSAVTDSFGPVSIQKRLPVRIDVAPDVPKEVFGDEVRVRQVLFNLVGNAMKFT 464

Query: 720 PSGG-QIIISTTHT---SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
             G  +I +ST          V+  V DTG GM++  L+    PF Q         +G G
Sbjct: 465 DQGEVRIEVSTLLPLPPDTVRVLFCVTDTGAGMSDTTLKTLGNPFTQASEGFTREHQGAG 524

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           LGL + K +V A  G     ST   GT   ++ P
Sbjct: 525 LGLSICKRLVAAMGGTLTFESTLGAGTAAYLMLP 558



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/248 (8%), Positives = 49/248 (19%), Gaps = 10/248 (4%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTW 143
             W           +E      G    + +G    +      +D   +       R+  +
Sbjct: 210 LIWTSGEDTLCDYFNEPWLDFTGRTLEQELGNGWVEGVHAEDLDRCIDTYVTAFARREPF 269

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +  L  + G   Y  +     P ++    F G+ G                       
Sbjct: 270 NMEYRLRHVSGE--YRWLVDQGTPRFNSQGAFVGYIGH--CLDITPRKQMEVELVAAKNA 325

Query: 204 FSHLHEIKKGHSSVEKEKYD-----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
               ++ K    +    +       +             ++     E        L    
Sbjct: 326 AESANKAKSAFLANMSHEIRTPLNGLLGMMQLLETTDTSDEQQMYIEMAIRSGGRLTRLL 385

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
             +L                     T      +    S +    +     P +       
Sbjct: 386 SDILDLSRIEAGRMPLSEEPFNLSETFSAVTDSFGPVSIQKRLPVRIDVAPDVPKEVFGD 445

Query: 319 ENLTPETV 326
           E    + +
Sbjct: 446 EVRVRQVL 453



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/335 (8%), Positives = 78/335 (23%), Gaps = 31/335 (9%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLW 150
            G +   +      +G     +IG ++               + +L   +     +  + 
Sbjct: 93  QGQITATNLTATAMLGIPRDNLIGQQITSFICDDDQHTFTREMKELFATRVARSCELRMK 152

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVH----VNRVDNDPRALGKRLDKKFSH 206
             +G   +  ++    P               +                     +  F +
Sbjct: 153 KTDGVQFWACLEFVLKPCDD----------CPVCRVVISDINDRKQAEIALTESELHFRN 202

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSP---PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
           L    +       E         P        ++ ++ +      H +D+ +     +  
Sbjct: 203 LSNSGQALIWTSGEDTLCDYFNEPWLDFTGRTLEQELGNGWVEGVHAEDLDRCIDTYVTA 262

Query: 264 -SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
            +       +     ++              N+      Y+ H    +     +      
Sbjct: 263 FARREPFNMEYRLRHVSGEYRWLVDQGTPRFNSQGAFVGYIGHCLDITPRKQMEVELVAA 322

Query: 323 PETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
               +                A  +FL    ++    +    G+  LL+    SD   + 
Sbjct: 323 KNAAESANK------------AKSAFLANMSHEIRTPLNGLLGMMQLLETTDTSDEQQMY 370

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
             M  RS        + +  +       + ++  P
Sbjct: 371 IEMAIRSGGRLTRLLSDILDLSRIEAGRMPLSEEP 405


>gi|322420752|ref|YP_004199975.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           M18]
 gi|320127139|gb|ADW14699.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           M18]
          Length = 672

 Score =  321 bits (823), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 103/663 (15%), Positives = 225/663 (33%), Gaps = 74/663 (11%)

Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD-VL 254
             +   K+ S + +  +    +   +     + +P     + +    +     H      
Sbjct: 31  ELEESRKRLSAVFDTVQVGIVIIDAETHTIVEANPKALELIGSSKEEVVGSVCHCFICPE 90

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ--NNSKESFEYLSHRNHPSLS 312
           +T   P+    +     +      N  + T  +    ++          +L   +     
Sbjct: 91  ETGHCPITDKGQRIDNAERQLIKANGEKITIVKTVARVELHGRDHLVESFLDISDRKRAE 150

Query: 313 AYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL-- 369
               E E    + ++        V + G   Y N ++     Y   +D+        +  
Sbjct: 151 EELRESEERYRDILENANDLIQSVDAKGGFIYVNDAWKKTLGYSD-EDLASLNIFDVIKP 209

Query: 370 ---------LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
                     D  K         V     D   I     ++    N              
Sbjct: 210 CCQSHCASMFDQLKSGRKIPRIEVEFVAKDGRSIILEGSINCNTSNG------------- 256

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
                + +   GI  +  + +  + ++     +   + E   + I +   EG  L  N+ 
Sbjct: 257 -----QAISTRGIFRDITERKQMETELMQSEDRYRKLFENAPEAILV-QSEGRYLCANKQ 310

Query: 481 VSKLFGY-PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
              LFG    E+++ K    F+  +   ++   + +I        L + +    K+  ++
Sbjct: 311 ACHLFGVESPEELIGKSLYSFVHPDFHGMVAERIQKIYDTGEPSPL-RESRIVRKDGAVI 369

Query: 540 SLRIIIKKL--PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS----------- 586
            +  I   +         + + DI+E KQ + +        EK    K+           
Sbjct: 370 DVEAIATGIIFQGQQAIQVIIRDITERKQVEEQRRELNSRLEKMVEEKTRHLKEAQAKLI 429

Query: 587 ---------DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE---YANYIDRSG 634
                    + +A  +HE+  PL  I+G  ++++        +P  +E       I+ + 
Sbjct: 430 QSEKMATLGEVIAGAAHELNNPLAGILGAIQMLRGSALAHPIDPELMEGIDVLESIESAA 489

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
                IV DL+  +     +   +F  + +++ + + + ++     E++I ++      +
Sbjct: 490 IRCQKIVEDLVRFT----TQARCNFSEMDINQVLKDTMEIMAGPFGEQKIKVKLHLDPEV 545

Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT----SNEEVILRVRDTGVGMTN 750
           P+I  D   + ++ +N+L NA    P+GG+I IST+         +V + +RD G G+  
Sbjct: 546 PQIDGDFVKLLEVYVNLLQNAKSALPNGGRIDISTSLVKKYGEQLQVAVVIRDNGCGIPP 605

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             L K   PF     +    G+G GLGL ++  +V  + G   + ST  KGT + +  P+
Sbjct: 606 QNLAKIFDPFFTTKPA----GKGPGLGLTVSYGIVKRHGGDIDVRSTVGKGTEVTVTVPV 661

Query: 811 YDT 813
              
Sbjct: 662 RQQ 664



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/291 (14%), Positives = 89/291 (30%), Gaps = 20/291 (6%)

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLT 352
              +      + +   ++   +E         D   +   +       +  ANP  L L 
Sbjct: 12  AVAQPAASAGYFDFSHVAGELEESRKRLSAVFDTVQVGIVIIDAETHTIVEANPKALELI 71

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
                + +   G +      P+ + +  I        +       A    I+ N E    
Sbjct: 72  GSSKEEVV---GSVCHCFICPEETGHCPITDKGQRIDN-------AERQLIKANGEKITI 121

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG 472
           +  +   + +             +  D +  + ++     +   ILE  +D I  ++ +G
Sbjct: 122 VKTVARVELHGRD---HLVESFLDISDRKRAEEELRESEERYRDILENANDLIQSVDAKG 178

Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
             +  N A  K  GY  ED+        ++    S       ++ S      +E   +  
Sbjct: 179 GFIYVNDAWKKTLGYSDEDLASLNIFDVIKPCCQSHCASMFDQLKSGRKIPRIEVEFVA- 237

Query: 533 TKEEKLLSLRIIIKKLPFSSCYS---LTMHDISEWKQEKNKLSHAKKIAEK 580
            K+ + + L   I     +           DI+E KQ + +L  ++    K
Sbjct: 238 -KDGRSIILEGSINCNTSNGQAISTRGIFRDITERKQMETELMQSEDRYRK 287



 Score = 78.1 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 49/475 (10%), Positives = 123/475 (25%), Gaps = 57/475 (12%)

Query: 89  IDAH-GYLKEISEELPKTIGNYAFKMIGMR------LCDVSDILHIDPNNHIGDLLKRQN 141
           IDA    + E + +  + IG+   +++G          +       D    I +      
Sbjct: 53  IDAETHTIVEANPKALELIGSSKEEVVGSVCHCFICPEETGHCPITDKGQRIDNA----- 107

Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
               +  L    G  + +   +A + ++ R+     F                   +  +
Sbjct: 108 ----ERQLIKANGEKITIVKTVARVELHGRDHLVESFL------DISDRKRAEEELRESE 157

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPP--PHLRMKNKVSSLTEYYAHKD--DVLKTE 257
           +++  + E           K                    ++SL  +   K         
Sbjct: 158 ERYRDILENANDLIQSVDAKGGFIYVNDAWKKTLGYSDEDLASLNIFDVIKPCCQSHCAS 217

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYF---GTLQNNSKESFEYLSHRNHPSLSAY 314
            +  L S       + +F   +      +       +          +        +   
Sbjct: 218 MFDQLKSGRKIPRIEVEFVAKDGRSIILEGSINCNTSNGQAISTRGIFRDITERKQMETE 277

Query: 315 FDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG---------- 364
             + E+   +  +  P    V S G    AN     L   +S +++              
Sbjct: 278 LMQSEDRYRKLFENAPEAILVQSEGRYLCANKQACHLFGVESPEELIGKSLYSFVHPDFH 337

Query: 365 --GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
                 +       + + ++   + R D   I   A    I +  + ++ +      +  
Sbjct: 338 GMVAERIQKIYDTGEPSPLRESRIVRKDGAVIDVEAIATGIIFQGQQAIQVIIRDITERK 397

Query: 423 QFPENMPQN-----GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
           Q  E   +       +  E        +   I+  ++ ++ E  +         G     
Sbjct: 398 QVEEQRRELNSRLEKMVEEKTRHLKEAQAKLIQSEKMATLGEVIA---------GAAHEL 448

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
           N  ++ + G  ++ +        ++      +   L  I S  +R       L  
Sbjct: 449 NNPLAGILG-AIQMLRGSALAHPIDPELMEGI-DVLESIESAAIRCQKIVEDLVR 501


>gi|260432099|ref|ZP_05786070.1| MmoS [Silicibacter lacuscaerulensis ITI-1157]
 gi|260415927|gb|EEX09186.1| MmoS [Silicibacter lacuscaerulensis ITI-1157]
          Length = 738

 Score =  321 bits (823), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 107/453 (23%), Positives = 191/453 (42%), Gaps = 16/453 (3%)

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
           L++  A +      ++R      A L +                 +     E +     +
Sbjct: 5   LAEKLAQERRARLAAERMLALKQAELSSANRKLGEYAMTLTRRIGETQAEVETVRGENEK 64

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
            +  D  I + K+E+   +L   ++   DG A  +    ++S N A   +F    E    
Sbjct: 65  VK-SDLTIAQAKIEVAERRLWHSIQTIQDGFAFFDGNDHLISANTAYLSVFEGLDEVAPG 123

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC- 553
             +   L+  T   +     E       + L +    +   E +        KL      
Sbjct: 124 ISYQRILDLLTNEGIIDIGDEPAEAWKARMLRRWARMNPPPEVIQLWNGQYIKLIDQRGQ 183

Query: 554 ---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
                    +I+   Q + +L  A+K AE  +  KS FLA +SHEIRTP+  I+G ++++
Sbjct: 184 GGDVVSLALNITASVQHEAQLQAARKKAEAANRAKSAFLANMSHEIRTPMNGIVGMTDLL 243

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
              +     N     Y + I  SG  +L I+ND+LD SKIE+ K+ LH E   L+  ++E
Sbjct: 244 SETQL----NDEQRLYVDTIRASGEALLVIINDVLDYSKIEADKLVLHPEEFDLERCINE 299

Query: 671 AISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
            + L+Q  A +K + +   +   +P + + D   V+QI  N++ NA+ FT  G  +I  T
Sbjct: 300 VVMLLQPSARDKGLTLLVDYDLFLPTLFVGDPGRVRQILTNLVGNAVKFTLHGHVLIRVT 359

Query: 730 THTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
                     ++ + + DTG+G+   +++     F QI + +  + +GTGLGL + K ++
Sbjct: 360 GVPDESRNDCDIHIAIEDTGIGIPPDKIDHIFGEFNQIDDKKTRQFDGTGLGLSITKRLI 419

Query: 786 DANMGKFYIFSTPAKGTL--IEIIFPLYDTSHP 816
               G  ++ S P KG+     +  P    S P
Sbjct: 420 SLMGGTLWVDSDPGKGSCFGFRLTLPTVVGSQP 452


>gi|170765897|ref|ZP_02900708.1| aerobic respiration control sensor protein ArcB [Escherichia
           albertii TW07627]
 gi|170125043|gb|EDS93974.1| aerobic respiration control sensor protein ArcB [Escherichia
           albertii TW07627]
          Length = 778

 Score =  321 bits (823), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 86/436 (19%), Positives = 178/436 (40%), Gaps = 17/436 (3%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L +           L  +Q     +     I   +  +         ++ E
Sbjct: 81  EESRQRLSRLVQKLEEMRERDLSL-NVQLKDNITQLNQEIADREKAEAELQETFGQLKIE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             +    + ++E +   L S L+A+ D +   N +      NRA+  L G   + ++   
Sbjct: 140 IKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCY 554
                     + +     ++   ++  T E+        +    +R +    ++      
Sbjct: 200 PADVYSPEAAAKVMETDEKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGL 259

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+        +   E+ S  K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 260 MGFGRDITERKR-------YQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE 312

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     +Y   I  S   + +I ND++D+ K+E  K+ L  +PV     +++  +L
Sbjct: 313 LTA----EQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENL 368

Query: 675 VQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
             L A +K +         +P +++ D   ++QI  N++SNA+ FT  G Q+ +   +  
Sbjct: 369 SALQAQQKGLRFVLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQG-QVTVRVRYDE 427

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMGKF 792
            E +   V D+G+G+   EL+K    + Q+ +S   +   GTG+GL +++ +     G  
Sbjct: 428 GEMLHFDVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDI 487

Query: 793 YIFSTPAKGTLIEIIF 808
            + S   KG+   +  
Sbjct: 488 TVTSEQGKGSTFTLTI 503


>gi|15894190|ref|NP_347539.1| sensory transduction histidine kinase [Clostridium acetobutylicum
           ATCC 824]
 gi|15023801|gb|AAK78879.1|AE007605_12 Sensory transduction histidine kinase [Clostridium acetobutylicum
           ATCC 824]
 gi|325508318|gb|ADZ19954.1| Sensory transduction histidine kinase [Clostridium acetobutylicum
           EA 2018]
          Length = 683

 Score =  321 bits (823), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 75/367 (20%), Positives = 166/367 (45%), Gaps = 5/367 (1%)

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRKPFTVFLEQNT 505
           + I   +   IL+   + I I +  G     N    KL     V+DI+ K    F+ ++ 
Sbjct: 294 LSISSQRYMQILQIMPEAIFIHD-NGKCNFINDKAIKLLEVKDVKDIIGKNIVDFIHEDY 352

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
             +    + + +   +     +  L +   +K++           +  +   + D++E K
Sbjct: 353 KELAQARIDKTMKTGMPCDFIEERLVTAMGKKIIIEAATTTFSHNNGTFITIIRDMTEKK 412

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + +      ++        + +F + +SHE+RTPL  I+  +  +            + +
Sbjct: 413 KNEANRKKLEQTLYY-DKVRKEFFSNLSHELRTPLN-ILASAMQLVRLNMDNDNKDGFEK 470

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           Y   ++++   +  I+++L+DI+KI++G +++    V +   + +    V  +   K I 
Sbjct: 471 YLKIMNQNIYRLTKIIDNLIDITKIDAGYLSVDLHTVEIVSVIEDITMSVIEFVKSKGID 530

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           I          +  D   ++++ LN+LSNA+ FTP GG+I ++  +  N+ + +RV+DTG
Sbjct: 531 IVFDTDVEEKFMPVDSDKIERVMLNLLSNAVKFTPKGGKITVNV-YDKNDSIQIRVKDTG 589

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+     E   + F Q+  +     EG+G+GL + K++++ + G+  + S    G+   
Sbjct: 590 IGIPKDMKETIFQRFIQVNKTLIREKEGSGIGLSIVKSLIEMHGGQIRVESELNVGSEFI 649

Query: 806 IIFPLYD 812
           I  P+ +
Sbjct: 650 IDLPVRN 656


>gi|239906948|ref|YP_002953689.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
            RS-1]
 gi|239796814|dbj|BAH75803.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
            RS-1]
          Length = 1419

 Score =  321 bits (823), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 100/410 (24%), Positives = 178/410 (43%), Gaps = 20/410 (4%)

Query: 409  NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468
                       +  +         +E E  D +  +  +    +   +I + +   + I 
Sbjct: 866  RLRVSALEKRRRELEATVRRRTADLENEIEDRKAAEDALHRSRLSFSAIFQFSPLAVTIS 925

Query: 469  NRE-GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
              +   +L  N A S L G   E  + +                 L E+          +
Sbjct: 926  EEQSARMLRVNEAFSHLTGIQAEQAIGRTSEELGFWERFEDRQQLLIELQV--AESVTNR 983

Query: 528  ITLGSTKEEKLL--SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
                   +   +       + +     C  + + DI+E K  +++L  A++ AE+ S  K
Sbjct: 984  ELAFRHADGHRIVGLCSCTVIEAFERRCLLMLIVDITERKALESELLAARERAEQGSRAK 1043

Query: 586  SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
            SDFLA +SHEIRTP+ AI+G ++++ +    P    R   Y +    SG +++ ++ND+L
Sbjct: 1044 SDFLANMSHEIRTPMNAIMGMADLLADTPLTP----RQKRYVDIFQHSGQILMRVINDIL 1099

Query: 646  DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSV 704
            D+SK+E+GK+ L  EP  L EA+ +  ++    A EK + +       +P R+  D   +
Sbjct: 1100 DLSKLEAGKLTLEPEPFDLPEALFQTCAVFTPQAEEKGLPLFCDLDPGLPRRVYGDPIRL 1159

Query: 705  KQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDTGVGMTNYELEKAMKPF 760
             QI  N+L+NA  FT  G +I +S + T        + L  RDTGVG+   ++ +    F
Sbjct: 1160 TQIVANLLANACKFTHEG-EIRLSASATLLGPSAFLLRLTCRDTGVGIAPDDIARVCDNF 1218

Query: 761  GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI--EIIF 808
             Q+  +Q+    GTGLGL ++K + +   G+  I S   +G  I   +  
Sbjct: 1219 FQVGGNQRR---GTGLGLAISKRLTELMQGELSIQSILGQGATITATVRL 1265


>gi|148654588|ref|YP_001274793.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp.
           RS-1]
 gi|148566698|gb|ABQ88843.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp.
           RS-1]
          Length = 695

 Score =  321 bits (823), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 103/685 (15%), Positives = 231/685 (33%), Gaps = 67/685 (9%)

Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212
           +G   +   +  A     +    +G+       +        A  +R+            
Sbjct: 46  DGRVTWWRHEPIAASTGDQWYAPNGWSLPWHDDLLHEVIARGAPCRRVVDAAGDPALHYG 105

Query: 213 GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ 272
                 +  + +   +     +    + + +          + +     + +   +  +Q
Sbjct: 106 APIIWNRRLWGVLELRGDHQMIIGDEEQALIDALSPLLAAAIASSSNTNIDTPILTTRQQ 165

Query: 273 EDFHTINLNQYTKKQYFGTL-------QNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
                +             L        + +      +   +           E      
Sbjct: 166 RVLDALRAELEAPLDLGELLTFLLRWALDATGAEAGAIGVVDRERGEVTLQAYEGYGANP 225

Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKS-VDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
           +          S          +         V     A  L  +   P     N     
Sbjct: 226 L----------SRDAFGETRRRWNWSVGVAGKVARTGRAILLRDVSHDPDYQALNPEVRA 275

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI---EPEDVDTR 441
            L                       ++ +   P   A    E      +       +   
Sbjct: 276 ELAMPIGADQPL-------------AVLILDSPRSTAFGDGEVAFVKALCDLAVNPLRRA 322

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
           ++ +++      L  +  +   G+A+++++G +L  N A   ++G P   +    +    
Sbjct: 323 LHYQQLLETSTHLGQVFSSIPGGLALMDQQGRVLRHNPAWLTIWGLPSGSMRDPFYVPLD 382

Query: 502 EQNTPSVMNHYLTEI-----LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CY 554
                         +             ++ + +  T   + L L  +  +  F S    
Sbjct: 383 LVPLLLPRLRDPLALTGMCAEGQRAPTEVQSLLVQLTSPHQELMLLSVPTRDSFGSLTGR 442

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
              + D++  +              +    KS+FL+ +SHE+RTPLT+I+G++E++  + 
Sbjct: 443 LWIVSDVTRER--------------EADRLKSEFLSIISHELRTPLTSIMGYTELLLARE 488

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
           F P       E+   +    N +  IV DLL ++++E+G + L+   VSL + VS+  + 
Sbjct: 489 FSP---AERREFVQTVYNEANHLYQIVEDLLGVTRLEAGNVRLNQWAVSLRQIVSDLTAQ 545

Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT---- 730
           +    + K   +      ++P + AD   V+Q+ +N+++NA+ ++P+GG+I ++ +    
Sbjct: 546 LNNQISGKH-TMLIDIPPHLPPVYADRDKVRQVLVNLITNAVKYSPNGGEIRLTISDNVE 604

Query: 731 ----HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
               H   + V + V D G+G+   +L +  + F ++ N    R  GTGLGL +AKA+V+
Sbjct: 605 LPPDHPRGKFVRVAVSDQGIGIAPEDLPRIWERFYRVDNGNTRRIGGTGLGLSIAKALVE 664

Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLY 811
            + G+ +  S   KG+      P+ 
Sbjct: 665 LHGGRIWAESKLNKGSTFYFTLPVA 689


>gi|253563810|ref|ZP_04841267.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|251947586|gb|EES87868.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
          Length = 929

 Score =  321 bits (823), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 105/644 (16%), Positives = 233/644 (36%), Gaps = 35/644 (5%)

Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS 242
           I    R   D     +   +       +     ++ ++   +           + +++  
Sbjct: 293 ICIELRKTKDEAVRERSFLRNLFRFMPMGYIRMTMVRDAAGLPCDYRIADANDLSSELIG 352

Query: 243 LTEYYA------HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS 296
           ++                K +   LL   E S+ ++ D +     + +    +   ++  
Sbjct: 353 MSLSDYVGCLASELHADFKAKVDYLLDVMEGSVHKETDVYFHRTQRSSHCIVYSPEKDEV 412

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYK 355
              F  L            D  E L        P    +Y   GNL   N   +     K
Sbjct: 413 VALF--LDSTETIRAHRALDRSEKLFKNIFANIPAGVEIYDKDGNLLDLNNWDMETFGVK 470

Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
              D+             ++ +    + ++ +R +    + +        ++ N + +  
Sbjct: 471 DKADVMGVNFFENPNVPLEIRERVRNEDLVDFRLN---YSFNKASDYYHSDKSNIIELYT 527

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA---IINREG 472
              +  +          I  ++ +      ++         I +    G A   ++++ G
Sbjct: 528 KVSKLFDSQGNFNGYVLINIDNTERIDAINRIRDFENFFLLISDYAKVGYAKLNLLSKRG 587

Query: 473 I-ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
             I    + + +    P+  ++       +       +  +  ++L+ + +    ++ + 
Sbjct: 588 YAIKQWFKNMGETEDIPLSSVVG--VYDKMHPEDRQKVFDFYEKVLAGEEKDFRSEMRIL 645

Query: 532 STK---EEKLLSLRIIIKKLPFSSC---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
                 E   + + +++ K              +DI+E K+ +  L  AK+ AE     K
Sbjct: 646 KPGATNEWNWVRMNVVVTKFESEHGEVEIIGINYDITELKETEAMLIEAKEKAETMDRLK 705

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
           S FLA +SHEIRTPL AI+GFS ++ +            EY   +  + +L+L +++D+L
Sbjct: 706 SAFLANMSHEIRTPLNAIVGFSGLLVDTE----DMEERCEYIKIVQENNDLLLQLISDIL 761

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
           D+SKIE+G     +    ++    + +   Q+   +  + +      +   +++D   + 
Sbjct: 762 DLSKIEAGTFEFTYGETDVNMLCEDIVRSSQIKVPQ-GVELVFDPHPSDCTVISDRNRLH 820

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           Q+  N ++NA+ FT SG  I +         V   V DTG+G++  +L    + F ++ +
Sbjct: 821 QVISNFVNNALKFTSSGS-IHVGYEKKEEG-VEFYVSDTGIGISKEQLTHIFERFVKLNS 878

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
                  GTGLGL + K++V+   G   + S   KG+      P
Sbjct: 879 FIH----GTGLGLSICKSIVEQLGGVIGVDSEEGKGSRFWFTIP 918


>gi|94986247|ref|YP_605611.1| PAS/PAC sensor signal transduction histidine kinase [Deinococcus
           geothermalis DSM 11300]
 gi|94556528|gb|ABF46442.1| PAS/PAC sensor signal transduction histidine kinase [Deinococcus
           geothermalis DSM 11300]
          Length = 770

 Score =  321 bits (823), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 97/752 (12%), Positives = 232/752 (30%), Gaps = 58/752 (7%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEG 154
           +  ++    + +G             +       P       L +     G+T    +  
Sbjct: 36  VTWLNAAARERLGEPPAAG---AWQALFP-----PEPARLLTLAQARAAAGETVRESVTL 87

Query: 155 TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214
                P+     P      +         +   R   +              +       
Sbjct: 88  PGSRAPVLATLTPAG--PGQV-----LLHLRDTRHPLEVAEELIDGLGLGMLVQAADGRV 140

Query: 215 SSVEKEKYDIFSQQSPPPHLRMKNKVS---------SLTEYYAHKDDVLKTEKYPLLTSE 265
            S       +          ++                          L+T +       
Sbjct: 141 LSANVAGQGLLGLSLAQMTGQVPADTRWRVIRPDGQPFAPEALPMFRALETGEVQRNVLA 200

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGT-LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
              +P +E          T        +    + +  +        L       E     
Sbjct: 201 GVVIPREEGGEETRWMNVTALPRHAPGVVRPKQVTTVFADVTEEQRLRQQMQFSEERYRS 260

Query: 325 TVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
            V+      +V  + G L    P++   T     +    +G +  L    +     A + 
Sbjct: 261 LVEATSQIVWVTTAEGELLGEQPTWSAFTGQTEAE-YRGSGWVEALHPDDRAGALAAWQQ 319

Query: 384 V-----------MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
                        L R+D   +   AR   +     +      +  + +           
Sbjct: 320 AVQSRIPYQTEYRLRRADGVYVPMQARGVAVTNPDGSVREWVGVNEDLSAVKAAEDHLRA 379

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSIL-EATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
           +     +    + +   ++ +  ++L  A  +GI  ++  G     N A + + GY VE 
Sbjct: 380 LNATLEERVAARTQELADLTRFSTLLLNAAGEGIFGLDASGRTTFANPAAAHILGYSVER 439

Query: 492 ILRKPFTVFLEQNTP-----SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
           ++       +  + P      V    + + L     +  E          + + +  ++ 
Sbjct: 440 LIGSLQHELIHHHHPDGRPYPVEACPIYQTLQDGQVRRREGEVFW-HARGEPVPVAYVVS 498

Query: 547 KLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
                        +   D++E ++ +  L  A    ++ ++    F    SH+++ PL  
Sbjct: 499 PTHGPGGEVTGAVVMFQDVTERQRAQAALEEAITNLQRSNAELEQFAYVASHDLQEPLRT 558

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           +  ++E++  +  G L +PR  +Y  ++  +   +  ++ DLL  +++  G+M+   +PV
Sbjct: 559 VGSYAELLARRYQGQL-DPRADQYLAFMQDAVERMRSLIQDLLGFARV--GRMDTGLQPV 615

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
            L++ + +A   VQ         +          +      + Q+  N++ N + F  +G
Sbjct: 616 QLEDVLRQAAQNVQGTLEATGATLSWDTPQ---TVWGHPGLLVQLFTNLIGNGLKFARAG 672

Query: 723 GQIIIS-TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
               +  T H   ++V ++V+D G+G+     E+    F ++   ++    G G+GL + 
Sbjct: 673 VPPEVHVTAHQEGQQVRIKVQDNGIGIAPEYHERVFAIFQRLN--RREAYPGNGIGLAIC 730

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
           + +V+ + G   + S P +GT   +  PL   
Sbjct: 731 RKIVEQHGGSISLTSVPGEGTTFHLTLPLPPV 762



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/403 (9%), Positives = 92/403 (22%), Gaps = 41/403 (10%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNN------HIGDLLKRQNTW 143
           A G +   +      +G    +M G    D    ++  D          +   L+     
Sbjct: 136 ADGRVLSANVAGQGLLGLSLAQMTGQVPADTRWRVIRPDGQPFAPEALPMFRALETGEVQ 195

Query: 144 YGK---TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
                   +   EG      +++ ALP ++        +   +      +   R   +  
Sbjct: 196 RNVLAGVVIPREEGGEETRWMNVTALPRHAP-GVVRPKQVTTVFADVTEEQRLRQQMQFS 254

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQS---PPPHLRMKNKVSSLTEYYAHKDDVLKTE 257
           ++++  L E       V   + ++  +Q                S      H DD     
Sbjct: 255 EERYRSLVEATSQIVWVTTAEGELLGEQPTWSAFTGQTEAEYRGSGWVEALHPDDRAGAL 314

Query: 258 KY-PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
                          +      +      +     + N      E++      S     +
Sbjct: 315 AAWQQAVQSRIPYQTEYRLRRADGVYVPMQARGVAVTNPDGSVREWVGVNEDLSAVKAAE 374

Query: 317 EGENLTPETVD----------------------KCPIPFFVYSH-GNLFYANPSFLLLTK 353
           +       T++                            F     G   +ANP+   +  
Sbjct: 375 DHLRALNATLEERVAARTQELADLTRFSTLLLNAAGEGIFGLDASGRTTFANPAAAHILG 434

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIK-PVMLYRSDRTCIAASARLHTIQWNRENSLA 412
           Y     I            P          P+     D         +      R   + 
Sbjct: 435 YSVERLIGSLQHELIHHHHPDGRPYPVEACPIYQTLQDGQVRRREGEVFW--HARGEPVP 492

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
           + ++         E      +  +  + +  +  +E  +  L 
Sbjct: 493 VAYVVSPTHGPGGEVTGAVVMFQDVTERQRAQAALEEAITNLQ 535



 Score = 60.0 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/240 (12%), Positives = 65/240 (27%), Gaps = 17/240 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN------HIGDLLKR 139
            + +DA G     +      +G    ++IG    ++    H D          I   L+ 
Sbjct: 413 IFGLDASGRTTFANPAAAHILGYSVERLIGSLQHELIHHHHPDGRPYPVEACPIYQTLQD 472

Query: 140 QNTWYGK-TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
                 +    W   G    VP+     P +    E +G     +          +A  +
Sbjct: 473 GQVRRREGEVFWHARGEP--VPVAYVVSPTHGPGGEVTGA--VVMFQDVTERQRAQAALE 528

Query: 199 R----LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254
                L +  + L +     S   +E        +     R + ++    + Y       
Sbjct: 529 EAITNLQRSNAELEQFAYVASHDLQEPLRTVGSYAELLARRYQGQLDPRADQYLAFMQDA 588

Query: 255 KTEKYPLLTS--EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
                 L+      + +   +        +   +Q    +Q   + +   LS     ++ 
Sbjct: 589 VERMRSLIQDLLGFARVGRMDTGLQPVQLEDVLRQAAQNVQGTLEATGATLSWDTPQTVW 648



 Score = 55.0 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/376 (6%), Positives = 76/376 (20%), Gaps = 8/376 (2%)

Query: 80  PRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-DLLK 138
             T +  W   A G L           G    +  G    +                 ++
Sbjct: 263 EATSQIVWVTTAEGELLGEQPTWSAFTGQTEAEYRGSGWVEALHPDDRAGALAAWQQAVQ 322

Query: 139 RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
            +  +  +  L   +G  +YVP+    + + + +         G+              +
Sbjct: 323 SRIPYQTEYRLRRADG--VYVPMQARGVAVTNPDGSVR--EWVGVNEDLSAVKAAEDHLR 378

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
            L+         +    +       +    +      + +     T        +L    
Sbjct: 379 ALNATLEERVAARTQELADLTRFSTLLLNAAGEGIFGL-DASGRTTFANPAAAHILGYSV 437

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
             L+ S +  L                  Y        +     +               
Sbjct: 438 ERLIGSLQHELIHHHHPDGRPYPVEACPIYQTLQDGQVRRREGEVFWHARGEPVPVAYVV 497

Query: 319 ENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTK--YKSVDDIEIAGGLSTLLDAPKLS 376
                   +                A  +         +S  ++E    +++      L 
Sbjct: 498 SPTHGPGGEVTGAVVMFQDVTERQRAQAALEEAITNLQRSNAELEQFAYVASHDLQEPLR 557

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
              +   ++  R        + +      +    +           +             
Sbjct: 558 TVGSYAELLARRYQGQLDPRADQYLAFMQDAVERMRSLIQDLLGFARVGRMDTGLQPVQL 617

Query: 437 DVDTRINKRKMEIEVM 452
           +   R   + ++  + 
Sbjct: 618 EDVLRQAAQNVQGTLE 633


>gi|254786633|ref|YP_003074062.1| PAS/PAC sensor hybrid histidine kinase [Teredinibacter turnerae
           T7901]
 gi|237684702|gb|ACR11966.1| PAS/PAC sensor hybrid histidine kinase [Teredinibacter turnerae
           T7901]
          Length = 691

 Score =  321 bits (823), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 106/482 (21%), Positives = 201/482 (41%), Gaps = 24/482 (4%)

Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403
            N  F     Y   D                  D+       ++   R+       +  I
Sbjct: 61  WNGGFWSHLGYSDADM--EFISNPDKFIEYVHPDDQKKLMSNIFAHLRSSGPGEI-VFRI 117

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
           +  +   +        + N     +  +GI  +    +  ++ + I   +   I+++++D
Sbjct: 118 RKKKGGHIWAEARVDAERNAKGRVVYMSGIVFDVTKLKQTEQALLISEARHARIIQSSND 177

Query: 464 GIAIIN-REGIILSTNRAVSKLFGYPVEDI-------LRKPFTVFLEQNTPSVMNHYLTE 515
           GI   +   G    +NR    L G+   D            +   +  +     +H L E
Sbjct: 178 GIWEWSSAHGGFHFSNRCWEHL-GFTEHDDIVNQGMDRMSAWRKRMHPDDLKEFDHTLQE 236

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKL 571
            +   +    +       K+E    +R   +     +      S T  D++E K  + ++
Sbjct: 237 HVQNRVP--FDVEYRIRGKDEHWRWIRARGQMTYDEAGKPTRMSGTNMDVTEIKLAEERV 294

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
             AK++AE+ +  KSDFL+ +SHE+RTPL +I+GF+++           P        I 
Sbjct: 295 LKAKEVAEEANRAKSDFLSSMSHELRTPLNSILGFAQLC---DADKSLLPEQRANIAEIR 351

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS-- 689
           R+G  +L +V D+LD++KIES +M    EPV+    ++EA+S +Q  A  + I +     
Sbjct: 352 RAGEHLLQLVGDVLDLAKIESRRMGFSLEPVTPARLLAEAVSSLQSQAEMRGISVTLEPA 411

Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749
              +   ++AD   +KQ+ LN+LSNAI +   GG + +         + + V+D+G G+ 
Sbjct: 412 CDESDVDVVADAVRLKQVFLNLLSNAIKYNVDGGSVHVGCARLEEAFLRVTVKDSGRGIA 471

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            +  ++  +PF ++ N      EG+G+GL + K +V+   G     S    G+   +  P
Sbjct: 472 EHLQKQMYQPFNRLGNEAS-SIEGSGVGLVITKQLVEQMGGLIGFSSKENVGSEFWVDMP 530

Query: 810 LY 811
           +Y
Sbjct: 531 VY 532


>gi|197119238|ref|YP_002139665.1| PAS/PAS domain-containing sensor histidine kinase response
           regulator [Geobacter bemidjiensis Bem]
 gi|197088598|gb|ACH39869.1| sensor histidine kinase response regulator, PAS and PAS
           domain-containing protein [Geobacter bemidjiensis Bem]
          Length = 853

 Score =  321 bits (823), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 98/518 (18%), Positives = 180/518 (34%), Gaps = 47/518 (9%)

Query: 311 LSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
                   E       +      F     G     NP+   +  Y + +++        L
Sbjct: 224 ALEQERLAEAKYRGIFENAMEGIFQTTPDGKFLSCNPATAAILGYSTPEEVLEGVVNVGL 283

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
                    + +  +M  R +                  + + +        N+  E + 
Sbjct: 284 QLYVDPQRRDELYAMMFQRQNVKNFEVEF-----CRKDGSRIWVDLSTRPAFNEEGELIY 338

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
            +G+  +  + + N+  +     +L  ++E +   I I + +G I   N    +L GY  
Sbjct: 339 IDGVIQDITERKHNEEALR----KLSQVVEQSPVSIVITDTQGRIEFVNPKFVQLTGYSP 394

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
            ++L +  ++      P   +  L E +        E   L   K+ +L S    I  + 
Sbjct: 395 GEVLGQNPSILNSGKAPIDKSRKLWETIRAGK--VWEGEFLNRKKDGELFSEHATISPIR 452

Query: 550 FSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
                   +     DI+E K  + +L  ++K+              V+H+    L+ I+G
Sbjct: 453 NKDGVITHFLAIKEDITERKLLQAQLFQSQKM-----ESIGRLAGGVAHDFNNMLSVILG 507

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
            ++     R    G P + +    I ++G     I   LL  S+ E     +    V+L+
Sbjct: 508 SAQ--LAMRCVTEGTPVWQD-LEQIVQAGKRSSQITRQLLAFSRKE----IIAPREVNLN 560

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725
           E  +E    +      + I +  +    +  I AD   + QI +N+  NA     +GG +
Sbjct: 561 EHFTEMQKTL-GRLIGEDIRMNFNPEPGLWTIDADTTQLDQILVNLAVNARDAMGNGGVL 619

Query: 726 IISTTHTS--------------NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
            I T +                 E V L V D G GM    L +  +PF          G
Sbjct: 620 TIETANVRVDGSYSQFHLDASLGEYVQLAVSDNGCGMDRETLAQIFEPFFTTK----EVG 675

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +GTGLGL     +V  + G   ++S P +GT  +I FP
Sbjct: 676 KGTGLGLATVYGIVRQHNGFINVYSEPGEGTTFQINFP 713



 Score = 70.4 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/258 (8%), Positives = 73/258 (28%), Gaps = 13/258 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI---GDLLKRQNT 142
            +     G     +      +G    + +   + +V   L++DP         + +RQN 
Sbjct: 246 IFQTTPDGKFLSCNPATAAILGYSTPEEVLEGVVNVGLQLYVDPQRRDELYAMMFQRQNV 305

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
              +      +G+   + +DL+  P ++   E     G  ++             ++L +
Sbjct: 306 KNFEVEFCRKDGS--RIWVDLSTRPAFNEEGELIYIDG--VIQDITERKHNEEALRKLSQ 361

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
                        +  + + +  + +          +V        +       +   L 
Sbjct: 362 VVEQSP--VSIVITDTQGRIEFVNPKFVQLTGYSPGEVLGQNPSILNSGKAPIDKSRKLW 419

Query: 263 TSEESSLPEQEDF--HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
            +  +    + +F     +   +++      ++N       +L+ +   +          
Sbjct: 420 ETIRAGKVWEGEFLNRKKDGELFSEHATISPIRNKDGVITHFLAIKEDITERKLLQAQLF 479

Query: 321 LTP--ETVDKCPIPFFVY 336
            +   E++ +        
Sbjct: 480 QSQKMESIGRLAGGVAHD 497


>gi|154254026|ref|YP_001414850.1| PAS/PAC sensor hybrid histidine kinase [Parvibaculum
           lavamentivorans DS-1]
 gi|154157976|gb|ABS65193.1| PAS/PAC sensor hybrid histidine kinase [Parvibaculum
           lavamentivorans DS-1]
          Length = 744

 Score =  321 bits (823), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 101/402 (25%), Positives = 168/402 (41%), Gaps = 21/402 (5%)

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
           +       R  K ++     +   ++ A  D I   +  G +   N      FG    D+
Sbjct: 44  LHARIETLRDEKWEIAEREERYRDLVRAQGDVIIRKDLRGRLTYVNDVFCDTFGKLRTDV 103

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
           + + F   L +     M    + +     R   +     + +  + ++      +     
Sbjct: 104 IGRTFVPDLPEGERPRMLASFSGLSMPPYRIRYD-ERTLTARGARCIAWEEFAIRDEDGK 162

Query: 553 --CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
                    D+++ K  + KL+ A + A++ +  KS FLA +SHEIRTP+  +IG ++++
Sbjct: 163 LVEIQAVGRDVTDRKDAEEKLAIALEQAKEANRAKSLFLATMSHEIRTPMNGVIGMTKLL 222

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
            + +  P        YA  +  SG  +L+I+ND+LD SKIE+GK+ L          +  
Sbjct: 223 LDTKLDPA----QRSYAEAVRASGEALLNIINDILDYSKIEAGKVTLDEAAFDPRNVLES 278

Query: 671 AISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQI---- 725
              L+   A +K + I T  + ++P  ++ D   ++QI LN+  NAI FT  GG      
Sbjct: 279 VAELLAPRAFDKGLEIVTEISPSVPRMLMGDEARIRQILLNLAGNAIKFTGRGGVALRLL 338

Query: 726 ---------IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
                     I         +IL V DTG+GM     E     F Q   S   R EGTGL
Sbjct: 339 REETSPAGRRIDGKREGRIGLILEVEDTGIGMDEQAREHIFDDFAQADQSHARRYEGTGL 398

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
           GL + K +V A  G+  + S   +G++     PL      HD
Sbjct: 399 GLAITKRLVGAMEGRIEVESEEGRGSVFRAHLPLRLALGEHD 440



 Score = 48.9 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/241 (11%), Positives = 53/241 (21%), Gaps = 14/241 (5%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRL-CDVSDILHIDPNNHIGDLLKRQNTWYGK 146
             D  G L  +++    T G     +IG     D+ +            L          
Sbjct: 78  RKDLRGRLTYVNDVFCDTFGKLRTDVIGRTFVPDLPEGERPRMLASFSGLSMPPYRIRYD 137

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                  G       + A   I   + +    +  G         D         ++   
Sbjct: 138 ERTLTARGARCIAWEEFA---IRDEDGKLVEIQAVG--RDVTDRKDAEEKLAIALEQAKE 192

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
            +  K    +    +          P   +      L +           E         
Sbjct: 193 ANRAKSLFLATMSHEIR-------TPMNGVIGMTKLLLDTKLDPAQRSYAEAVRASGEAL 245

Query: 267 S-SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
              + +  D+  I   + T  +     +N  +   E L+ R          E     P  
Sbjct: 246 LNIINDILDYSKIEAGKVTLDEAAFDPRNVLESVAELLAPRAFDKGLEIVTEISPSVPRM 305

Query: 326 V 326
           +
Sbjct: 306 L 306



 Score = 41.6 bits (96), Expect = 0.57,   Method: Composition-based stats.
 Identities = 17/146 (11%), Positives = 27/146 (18%), Gaps = 9/146 (6%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
                   E E    + V             G L Y N  F         D I       
Sbjct: 52  RDEKWEIAEREERYRDLVRAQGDVIIRKDLRGRLTYVNDVFCDTFGKLRTDVIG------ 105

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
                                             T+       +A         +     
Sbjct: 106 RTFVPDLPEGERPRMLASFSGLSMPPYRIRYDERTLTARGARCIAWEEFAIRDEDGKLVE 165

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQ 453
           +   G   +  D +  + K+ I + Q
Sbjct: 166 IQAVG--RDVTDRKDAEEKLAIALEQ 189


>gi|303248516|ref|ZP_07334774.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio
           fructosovorans JJ]
 gi|302490136|gb|EFL50056.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio
           fructosovorans JJ]
          Length = 676

 Score =  321 bits (823), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 110/546 (20%), Positives = 207/546 (37%), Gaps = 46/546 (8%)

Query: 283 YTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF------DEGENLTPETVDKCPIPF-FV 335
            + ++                       L A                  +D       FV
Sbjct: 1   MSFRRRLRPAPRKRDRRPGGFHAARRAPLPAVQAVLGDMPGRLTRLSSILDALDQGIAFV 60

Query: 336 YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIA 395
              G +   N  +L L    + D +    GL+ L    +    +A   +         ++
Sbjct: 61  SPEGLVMEINDRYLNLLGRAAEDVLGQ--GLAALDLETEDYQASAFLDLFRRGVAHAPVS 118

Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
              RL            +T       +Q    +       +       +  +E E   L 
Sbjct: 119 FDRRLG--------VRDVTAKLQPVFDQ-GSLIGLLVSLIDVTPLVEARLSVEREKSFLE 169

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
            ++      I I+NR+ ++++ N   + + GY  +  L +     L ++ PS       +
Sbjct: 170 QVITIAGAAICIVNRDDVVVTINDEFTAITGYSRDQALGRERAGLLRESPPSPCPA---K 226

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKL 571
                     ++ +   T++ + L++      +  ++        +  D+S   +     
Sbjct: 227 PARPGNGAVQKRQSQILTRDGQRLTILKNAAPILDATGTPTGGIESFVDVSSLIRA---- 282

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
              +  AE+ S  KS FLA +SHEIRTPL AI+G +++++             +  + + 
Sbjct: 283 ---RVEAEEASRMKSAFLANMSHEIRTPLNAILGLTQILRKTAL----TDEQRDCVDTMR 335

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
            +G  +L I+ DLLD S++E G++ +   P+ ++  + E   +++  A E+ + +     
Sbjct: 336 SAGEGLLVILGDLLDFSRMEVGRLEIRPAPMDIERLLEETRRVMEPLAAERGLTLCLERD 395

Query: 692 NNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-------VILRVRD 743
            ++PR+L  D   +KQI LN+LSNAI FTP G ++ +  +             V   VRD
Sbjct: 396 PDLPRVLVCDPMRLKQILLNLLSNAIKFTPQG-RVTLYASRAREPMAYEGPVAVQFAVRD 454

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK-FYIFSTPAKGT 802
           TG G+     E+  +PF Q   +      GTGLGL ++  +V    G    + S P KG+
Sbjct: 455 TGPGIPEGMRERIFEPFVQSDETIAGNHGGTGLGLSISDRLVRLLGGTGLSVTSQPGKGS 514

Query: 803 LIEIIF 808
                 
Sbjct: 515 SFFFTL 520



 Score = 46.9 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 49/471 (10%), Positives = 119/471 (25%), Gaps = 25/471 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +   G + EI++     +G  A  ++G  L  +         +   DL +R       + 
Sbjct: 60  VSPEGLVMEINDRYLNLLGRAAEDVLGQGLAALDLETEDYQASAFLDLFRRGVAHAPVS- 118

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +       +     P++ +            V             K   ++   + 
Sbjct: 119 ---FDRRLGVRDVTAKLQPVFDQGSLIGLLVSLIDVTPLVEARLSVEREKSFLEQVITIA 175

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
                  + +     I  + +          +         +         P      + 
Sbjct: 176 GAAICIVNRDDVVVTINDEFTAITGYSRDQALGRERAGLLRESPPSPCPAKPARPGNGAV 235

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
              Q    T +  + T  +    + + +      +      S                  
Sbjct: 236 QKRQSQILTRDGQRLTILKNAAPILDATGTPTGGIESFVDVSSLIRARVEAEEAS----- 290

Query: 329 CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL-SDNNAIKPVMLY 387
                      + F AN S  + T   ++  +      + L D  +   D        L 
Sbjct: 291 --------RMKSAFLANMSHEIRTPLNAILGLTQILRKTALTDEQRDCVDTMRSAGEGLL 342

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK-RK 446
                 +   +R+   +     +        E+  +  E +         ++   +  R 
Sbjct: 343 VILGDLLDF-SRMEVGRLEIRPAPMDIERLLEETRRVMEPLAAERGLTLCLERDPDLPRV 401

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
           +  + M+L  IL            +G +        +   Y     ++     F  ++T 
Sbjct: 402 LVCDPMRLKQILLNLLSNAIKFTPQGRVTLYASRAREPMAYEGPVAVQ-----FAVRDTG 456

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT 557
             +   + E +     Q+ E I          LS+   + +L   +  S+T
Sbjct: 457 PGIPEGMRERIFEPFVQSDETIAGNHGGTGLGLSISDRLVRLLGGTGLSVT 507


>gi|332994347|gb|AEF04402.1| multi-sensor hybrid histidine kinase [Alteromonas sp. SN2]
          Length = 956

 Score =  321 bits (823), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 100/420 (23%), Positives = 179/420 (42%), Gaps = 22/420 (5%)

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
             L            + +      +          +  +    R     +E  V  L   
Sbjct: 388 GELKHFSVEDGLEKHIKWTNTPLEDANHNIRGAIFVGVDYSTQRS----LESHVQILNHA 443

Query: 458 LEATSDGIAIIN--REGI-ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
           ++  +  I I +  R G  I+  N A ++L GY  EDI+ +       + T S     + 
Sbjct: 444 MDEATVSIVIADIKRTGQPIIYVNNAFNRLTGYNKEDIIGRNCRFMQGEGTDSNTTALIR 503

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKL 571
             ++   R+ +E   L   K+      ++I+  +        Y     D+++ +Q +  L
Sbjct: 504 SAIA--KREPIETTILNYRKDGASFYNKLILTPVKSDGEVTHYIGFQQDVTQQRQAERYL 561

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
             AK+ AE+ +  KS FLA +SHEIRTP+  I G  +++ N       N     Y +   
Sbjct: 562 QDAKQKAEESAHMKSGFLASMSHEIRTPIHGISGVLQLLTNSPL----NDEQKHYLSLAT 617

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
            S   +L IVND+LD SKIE+G++ +  +P  L E +    S   +   EK + +   F 
Sbjct: 618 FSIQGLLHIVNDILDFSKIEAGQLQIDDQPFDLLETLESLQSQYAILCQEKGLRLHFHFN 677

Query: 692 -NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS--NEEVILR--VRDTGV 746
                 ++ D    +QI  N++ NA+ FT  G +I ++TT     ++++ L   V+D+G+
Sbjct: 678 LQGFHVVIGDSVRFRQILSNLIGNAVKFTEKG-EIDVTTTLEHTNDDKLRLTCAVKDSGI 736

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+   +       F Q   S   +  GTGLGL ++K + +   G+ ++ S   +G+    
Sbjct: 737 GIAKDKQAGIFDVFTQEDLSTTRKFGGTGLGLSISKQLCELMDGEIHLESEKGEGSTFTF 796



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 15/132 (11%), Positives = 38/132 (28%), Gaps = 6/132 (4%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLC-DVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIE 153
           +  ++    +  G     +IG        +    +    I   + ++         +  +
Sbjct: 463 IIYVNNAFNRLTGYNKEDIIGRNCRFMQGEGTDSNTTALIRSAIAKREPIETTILNYRKD 522

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
           G + Y  + L   P+ S + E + + GF                +   +K      +K G
Sbjct: 523 GASFYNKLIL--TPVKS-DGEVTHYIGFQ--QDVTQQRQAERYLQDAKQKAEESAHMKSG 577

Query: 214 HSSVEKEKYDIF 225
             +    +    
Sbjct: 578 FLASMSHEIRTP 589



 Score = 45.8 bits (107), Expect = 0.031,   Method: Composition-based stats.
 Identities = 23/198 (11%), Positives = 52/198 (26%), Gaps = 32/198 (16%)

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
            E + F   +  +   K     L++ +      +      S     +    +    +D+ 
Sbjct: 388 GELKHFSVEDGLEKHIKWTNTPLEDANHNIRGAIFVGVDYSTQRSLESHVQILNHAMDEA 447

Query: 330 PIPFFVYSHGN----LFYANPSFLLLTKYKSVDDIEIA----------GGLSTLLDAPKL 375
            +   +         + Y N +F  LT Y   D I                + L+ +   
Sbjct: 448 TVSIVIADIKRTGQPIIYVNNAFNRLTGYNKEDIIGRNCRFMQGEGTDSNTTALIRSAIA 507

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
                   ++ YR D         L  ++ +                   E     G + 
Sbjct: 508 KREPIETTILNYRKDGASFYNKLILTPVKSDG------------------EVTHYIGFQQ 549

Query: 436 EDVDTRINKRKMEIEVMQ 453
           +    R  +R ++    +
Sbjct: 550 DVTQQRQAERYLQDAKQK 567



 Score = 40.8 bits (94), Expect = 0.97,   Method: Composition-based stats.
 Identities = 12/191 (6%), Positives = 54/191 (28%), Gaps = 23/191 (12%)

Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
           A   L  +  +  N +  T        +    +       + + + + +  +     Q  
Sbjct: 277 AENTLSALYKDIVNRIKDTDSQESVIVEEARELANIRSAFDTLISDLAEMSL--SNEQFS 334

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           +++++  D + +++    ++ +N+                 F           + + L +
Sbjct: 335 NVIDSMGDMLLVVDENHRVMLSNKRFDA-------------FCEDQYGEREGTVKYILNK 381

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNKL 571
           +++    +           +     ++     L  +            D S  +  ++ +
Sbjct: 382 LINKPSGELKHFSVE----DGLEKHIKWTNTPLEDANHNIRGAIFVGVDYSTQRSLESHV 437

Query: 572 SHAKKIAEKES 582
                  ++ +
Sbjct: 438 QILNHAMDEAT 448


>gi|213970545|ref|ZP_03398672.1| extracellular solute-binding protein/sensory box protein
           [Pseudomonas syringae pv. tomato T1]
 gi|213924716|gb|EEB58284.1| extracellular solute-binding protein/sensory box protein
           [Pseudomonas syringae pv. tomato T1]
          Length = 1062

 Score =  321 bits (823), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 127/689 (18%), Positives = 242/689 (35%), Gaps = 59/689 (8%)

Query: 149 LWPIEGTNLYVPIDLAALPI--YSRNREFSGFRG--FGIVHVNRVDNDPRALGKRL---- 200
            W  +   + V ++ A  P+  +     F G       +V +             L    
Sbjct: 298 RWIAQHPVVRVVVNEAYAPLTFFDAKGNFRGITADLLELVRLRTGLKFDVKRSPSLTDMQ 357

Query: 201 ----DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256
               + +   +  +       ++  +      +    +  K+K S           +  T
Sbjct: 358 NQVSEGQADMIGALVSSDVREDRLSFSRPYIDNSFVLVTRKDKGSPSYLEQMDGKRLAIT 417

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
           +  P+L       P        N  Q       G  +                       
Sbjct: 418 QGSPMLDWLRRKYPRVVPLEIDNPFQALDMLAVGRTEGAVVSLLSADY------------ 465

Query: 317 EGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
                            F               L++   S + +E++  L   L +    
Sbjct: 466 -----------FLSSGIFEERLQMTATVGEDPALISMATSRNALELSSILDKALASIAPQ 514

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           D  AI       +            +  W+    L    +           +    +  +
Sbjct: 515 DLAAINNRWRAYTP----------SSASWHDYQRLIYQIVIGAGLLLLGLLVWNAWMRRQ 564

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
                  +R +  +   + ++++ T   I + +R+G++   N +  + F    EDI+ K 
Sbjct: 565 IRQREAAERALSDQYEFMRALVDGTPHPIYVRDRDGLLQMCNDSYLRAFSAQREDIIGKS 624

Query: 497 FTVFLEQNTPSV--MNHYLTEILSLDLRQTLEKITLGSTKEEKLL-SLRIIIKKLPFSSC 553
            T  +  N             +++ +    L++      ++  +   +      L     
Sbjct: 625 ATERVLGNAFEAREYAADYQRVMASNTALILDRPLHIGDRQLTIYHWILPFRDSLGEVQG 684

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
                 DIS+ +Q    L  AK+ A+  S  KS FLA +SHEIRTP+ A+IG  E+   +
Sbjct: 685 IIGGWIDISDRRQLIEDLQAAKEQADAASRAKSTFLATMSHEIRTPMNAVIGMLELALKR 744

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
                 +            S N +LD++ D+LDI++IESG++ L+ E  +L + V   + 
Sbjct: 745 ADQGELD---RSAIEVAYSSANDLLDLIGDILDIARIESGRLALNPERANLRQLVESVLR 801

Query: 674 LVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
           +    A +K + +     + I   +L D    KQI  N++SNAI FTP G ++ I+    
Sbjct: 802 VFDGLARQKDLDLVLELDSRINTDVLIDPLRFKQILSNLVSNAIKFTPMG-RVKIALQAV 860

Query: 733 SNE-----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
            N       + + V+D+G+G++  + ++  +PF Q  N+ Q+   G GLGL + +++   
Sbjct: 861 DNPDPQLLHLHITVQDSGIGISVEDQKRLFEPFAQADNTGQMARTGAGLGLVICRSLCMM 920

Query: 788 NMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
             G   + S P  GT I +   L  T  P
Sbjct: 921 MGGNLSLDSEPGNGTRISMNL-LLTTLEP 948



 Score = 41.2 bits (95), Expect = 0.80,   Method: Composition-based stats.
 Identities = 29/231 (12%), Positives = 57/231 (24%), Gaps = 8/231 (3%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCD--VSDILHIDPNNHIGDLLKRQNTWYGKT 147
           D  G L+  ++   +        +IG    +  + +             +   NT     
Sbjct: 597 DRDGLLQMCNDSYLRAFSAQREDIIGKSATERVLGNAFEAREYAADYQRVMASNTALILD 656

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
               I    L +   +  LP      E  G  G  I              +   ++    
Sbjct: 657 RPLHIGDRQLTIYHWI--LPFRDSLGEVQGIIGGWI--DISDRRQLIEDLQAAKEQADAA 712

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
              K    +    +            L +  K +   E      +V  +    LL     
Sbjct: 713 SRAKSTFLATMSHEIRTPMNAVI-GMLELALKRADQGELDRSAIEVAYSSANDLLDLIGD 771

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
            L +     +  L    ++     L  +    F+ L+ +    L    D  
Sbjct: 772 IL-DIARIESGRLALNPERANLRQLVESVLRVFDGLARQKDLDLVLELDSR 821


>gi|94499808|ref|ZP_01306344.1| putative sensor protein [Oceanobacter sp. RED65]
 gi|94428009|gb|EAT12983.1| putative sensor protein [Oceanobacter sp. RED65]
          Length = 938

 Score =  321 bits (823), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 103/383 (26%), Positives = 177/383 (46%), Gaps = 18/383 (4%)

Query: 439 DTRINKRKMEIEVMQ---LCSILEATSDGIAIIN---REGIILSTNRAVSKLFGYPVEDI 492
           + + ++ ++  +      L   ++A+  G+ I +    +  ++  NR   KL GY   ++
Sbjct: 274 ELKNSQEQLLKQQDLNVLLSEAIDASPVGVTIADINKPDEPLIYANRFFYKLTGYSESEV 333

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS--LRIIIK-KLP 549
           + K       +NT       + + ++   +  L    L   K+       L +    K  
Sbjct: 334 IGKNCRFLQGRNTNREARLIIRDAINTRRKIVL--ELLNYKKDGTEFWEKLFLSPIFKDG 391

Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
               Y     DIS   Q K K+  AK+ AE+ +  KS+FLA +SHEIRTP+  ++G    
Sbjct: 392 ECRAYVGIQQDISYEIQNKTKMIQAKEQAERATQAKSEFLANMSHEIRTPMNGVLGM--- 448

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           +K  R     N   +   N    S   +L ++ND+LD SKIE+GK+NL     +L E +S
Sbjct: 449 LKLVRKSKGLNRDQLHQINLAHTSAESLLVVINDILDFSKIEAGKINLETIDFNLLEWIS 508

Query: 670 EAISLVQLYANEKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSG-GQIII 727
           +    +  +A++K I +    ++     ++ D   V+Q+  N++ NAI FT  G  +I +
Sbjct: 509 DISESLAFHAHKKDIDLSLDISDVTYFNLIGDPNRVRQVISNLVGNAIKFTNDGWVKIKL 568

Query: 728 STTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
           ST    +  + L   ++DTG+G+    L+K    F Q  NS   +  GTGLGL +AK + 
Sbjct: 569 STKPEKSNLIKLSCSIKDTGIGIAEDRLDKLFSAFEQADNSTTRQYGGTGLGLAIAKKLC 628

Query: 786 DANMGKFYIFSTPAKGTLIEIIF 808
           +   G   + STP  G+      
Sbjct: 629 EIMGGDVTVSSTPGVGSQFSFHI 651


>gi|17229296|ref|NP_485844.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17130894|dbj|BAB73503.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 1287

 Score =  321 bits (823), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 123/814 (15%), Positives = 260/814 (31%), Gaps = 106/814 (13%)

Query: 90   DAHGYLKEISEELPKTIGNYAFKMI-GM-RLCDVSDILHI---DPNNHIGDLLKRQNTWY 144
            D +G +++ +E     +G     ++ G     +++   +I   +       +  +     
Sbjct: 333  DIYGGIQQANEAFLMMVGYSQEDLLTGRLNWKNITPPEYIYLDEQGIAEAQVNPKGACTP 392

Query: 145  GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA--------L 196
             +      +G+   +P+ +  + +    RE         +         +         L
Sbjct: 393  YEKEYIHQDGS--RIPVLIGYV-LLGEKRE----ESVAFILDLSERQQAQQKILQLNKDL 445

Query: 197  GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP-----------HLRMKNKVSSLTE 245
             +R+ +  + L  I  G    E  +                       L         T 
Sbjct: 446  QRRVVELQTLLDVIPIGIGIAEDPECQHIKINPAFAKQLQLSTDVNASLSAPPDQRPTTF 505

Query: 246  YYAHKDDVLKTEKYPL---LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN----SKE 298
               H+   L   + P+          L  + D    N       +Y   L +        
Sbjct: 506  KVFHEGRELLPAELPMQYSAAHGAEVLDYEVDIVHDNGEIIKLLEYVAPLFDEDGNTRGC 565

Query: 299  SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF--VYSHGNLFYANPSFLLLTKYKS 356
               ++               +    + ++  P P          + +AN +   L   + 
Sbjct: 566  IGAFVDITERKQAEELLRNEQKWLEDVLNLMPRPLLFIEPETARVTFANRAADELAGGEF 625

Query: 357  VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
               +      +         +    + +   R  R        L     +    L++   
Sbjct: 626  PRGVAAEEYHTVYHFTDINGNPVPNEQMPGVRVARGERLEGLELDWHTND--EVLSLLIF 683

Query: 417  PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD------GIAIINR 470
                            +       +  ++ + +   +L  +    +D       +A+I+ 
Sbjct: 684  ADTLPAMHGYPATCVVVFQNITQIKQAEKALSLGYQRLKLLFSTANDLLSSQEPVALIDS 743

Query: 471  E--------------GIILSTNRAVSKLFGYPV-EDILRKPFTVFLEQNT------PSVM 509
                             ++  N    +L  Y      L +                    
Sbjct: 744  CFQKLAQQIGLDVYLNYLVEDNPQSMRLASYRGICPELAQEIEFLRFGEAVCGTTAQERH 803

Query: 510  NHYLTEILSLDLRQTLEKITLG--------STKEEKLLSLRIIIKKLPFS------SCYS 555
            +  L  +      +T    ++G           + +LL       +   +          
Sbjct: 804  SIALENVQQSTDPKTQLIRSVGINAYYSYPLIAQGRLLGTLSFGSRSRANFTDNQKGMMQ 863

Query: 556  LTMHDIS---EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
                 I+   E  +  N L    +   + +  K +FLA +SHE+R+PL AI+G++++++ 
Sbjct: 864  AVCDQIAIAMERVELINSLQRQTEQLTEANRMKDEFLAILSHELRSPLNAILGWAQLLQA 923

Query: 613  QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
            +R   L   +  +    I+R+      ++ DLLDIS++  GK+ L+    +L   +  AI
Sbjct: 924  RR---LSEAQTAKGLETIERNAKAQTQLIEDLLDISRMIRGKLRLNVRTCNLIPIIETAI 980

Query: 673  SLVQLYANEKRILIRTSFA----NNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIII 727
              + L A  K I +          N+P ++  D   ++Q+  N+L+NAI FTPSGG++ +
Sbjct: 981  ENINLAAQAKEIDLTFFLENPATENLPFQVSGDSERLQQVIWNLLTNAIKFTPSGGKVEV 1040

Query: 728  STTHTS---------NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
              T            N    ++V DTG+G+ +  L      F Q  +S      G GLGL
Sbjct: 1041 RLTKNPGCEQNELITNNYAQIQVIDTGIGINSSFLPYVFDRFRQADSSITRSHGGLGLGL 1100

Query: 779  PLAKAMVDANMGKFYIFSTPA--KGTLIEIIFPL 810
             + + +V+ + G  ++ S P   +G+   +  PL
Sbjct: 1101 AIVRHLVELHGGTVHVHS-PGEEQGSTFTVKLPL 1133



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/303 (12%), Positives = 84/303 (27%), Gaps = 27/303 (8%)

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKS 356
                L  +            E      VD   I       +G +  AN +FL++  Y  
Sbjct: 294 AVVIELLSQQRDRAQETLKAYEEKLASLVDANIIGIIFSDIYGGIQQANEAFLMMVGYSQ 353

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
            D +        +     +  +              C         I  +      +   
Sbjct: 354 EDLLTGRLNWKNITPPEYIYLDEQGIAEAQVNPKGACTPYEKEY--IHQDGSRIPVLIGY 411

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRK-------MEIEVMQLCSILEATSDGI-AII 468
                 +            +  + +  ++K       ++  V++L ++L+    GI    
Sbjct: 412 VLLGEKREESVAFIL----DLSERQQAQQKILQLNKDLQRRVVELQTLLDVIPIGIGIAE 467

Query: 469 NREGIILSTNRAVSKLFGYPVE-------DILRKPFTVFLEQNTPSVMNHYLT-EILSLD 520
           + E   +  N A +K      +          ++P T  +      ++   L  +  +  
Sbjct: 468 DPECQHIKINPAFAKQLQLSTDVNASLSAPPDQRPTTFKVFHEGRELLPAELPMQYSAAH 527

Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNKLSHAKK 576
             + L+          +++ L   +  L               DI+E KQ +  L + +K
Sbjct: 528 GAEVLDYEVDIVHDNGEIIKLLEYVAPLFDEDGNTRGCIGAFVDITERKQAEELLRNEQK 587

Query: 577 IAE 579
             E
Sbjct: 588 WLE 590



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 56/480 (11%), Positives = 129/480 (26%), Gaps = 40/480 (8%)

Query: 190 DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP----PHLRMKNKVSSLTE 245
            +  +   K  ++K + L +              I            + +       L  
Sbjct: 304 RDRAQETLKAYEEKLASLVDANIIGIIFSDIYGGIQQANEAFLMMVGYSQEDLLTGRLNW 363

Query: 246 YYAHKDDVLKTEKYPLLTSE----ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301
                 + +  ++  +  ++     +  P ++++   + ++      +  L    +ES  
Sbjct: 364 KNITPPEYIYLDEQGIAEAQVNPKGACTPYEKEYIHQDGSRIPVLIGYVLLGEKREESVA 423

Query: 302 YLSHRNHPSLSAY--------FDEGENLTPETVDKCPIPFFVYSHGN--LFYANPSFLLL 351
           ++   +    +                     +D  PI   +           NP+F   
Sbjct: 424 FILDLSERQQAQQKILQLNKDLQRRVVELQTLLDVIPIGIGIAEDPECQHIKINPAFAKQ 483

Query: 352 TKYKS---VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
            +  +              T               + +  S             I  +  
Sbjct: 484 LQLSTDVNASLSAPPDQRPTTFKVFHEGRELLPAELPMQYSAAHGAEVLDYEVDIVHDNG 543

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468
             + +        ++        G   +  + +  +  +  E   L  +L      +  I
Sbjct: 544 EIIKLLEYVAPLFDEDGNTRGCIGAFVDITERKQAEELLRNEQKWLEDVLNLMPRPLLFI 603

Query: 469 NRE-GIILSTNRAVSKLFGYPVED----ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
             E   +   NRA  +L G                 F + N   V N  +  +      +
Sbjct: 604 EPETARVTFANRAADELAGGEFPRGVAAEEYHTVYHFTDINGNPVPNEQMPGVRVARGER 663

Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAE 579
                    T +E +LSL I    LP    Y     +   +I++ KQ +  LS   +  +
Sbjct: 664 LEGLELDWHTNDE-VLSLLIFADTLPAMHGYPATCVVVFQNITQIKQAEKALSLGYQRLK 722

Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639
              S  +D L+      + P+  I    + +  Q    +G   Y+ Y    +     +  
Sbjct: 723 LLFSTANDLLSS-----QEPVALIDSCFQKLAQQ----IGLDVYLNYLVEDNPQSMRLAS 773



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 61/190 (32%), Gaps = 5/190 (2%)

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDV--DTRINKRKMEIEVMQLCSILEATSDGI 465
             + A++         F   + QN +  E +       +  ++    +L S+++A   GI
Sbjct: 270 GPAFAVSVFAVILIVIFAIIIWQNAVVIELLSQQRDRAQETLKAYEEKLASLVDANIIGI 329

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDIL--RKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
              +  G I   N A   + GY  ED+L  R  +          +    + E        
Sbjct: 330 IFSDIYGGIQQANEAFLMMVGYSQEDLLTGRLNWKNITPPEYIYLDEQGIAEAQVNPKGA 389

Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSSCY-SLTMHDISEWKQEKNKLSHAKKIAEKES 582
                     ++   + + I    L          + D+SE +Q + K+    K  ++  
Sbjct: 390 CTPYEKEYIHQDGSRIPVLIGYVLLGEKREESVAFILDLSERQQAQQKILQLNKDLQRRV 449

Query: 583 SHKSDFLARV 592
                 L  +
Sbjct: 450 VELQTLLDVI 459


>gi|188584892|ref|YP_001916437.1| multi-sensor signal transduction histidine kinase [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179349579|gb|ACB83849.1| multi-sensor signal transduction histidine kinase [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 612

 Score =  321 bits (823), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 86/370 (23%), Positives = 170/370 (45%), Gaps = 26/370 (7%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            K++ E  +  +I+++  DGI + N +  I+  N+A   +F    ++++   F   L   
Sbjct: 261 SKLKREKQKAEAIVQSIGDGIIVTNEDNKIILVNKAAEDVFDIREKEVIDTHFLEAL--- 317

Query: 505 TPSVMNHYLTEILSLDLR--QTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHD 560
               +   + +         ++   I++    +     + +   K   S        + D
Sbjct: 318 NNQEIFDLIKKSKDESQLYYKSYTDISMIKDGDTNYYRIIVNPIKAKDSKTMGVITLIQD 377

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I++ K+                  KS F++ VSHE RTPLT+I     ++ ++  G + N
Sbjct: 378 ITKLKKVDE--------------LKSQFVSTVSHEFRTPLTSINMSIGLLLDKIPGDI-N 422

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
               E    I      +  +VN+LLD+S+IESGKM + F+   +   +  A+  +++ A 
Sbjct: 423 DDQKELLQVIQEDSERLNRLVNELLDLSRIESGKMQMDFDYYDIKNIIQHAVKPLRIQAE 482

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ--IIISTTHTSNEEVI 738
           EK I I+ + ++N+P++ AD   +  +  N++ NA+ +TP+ G   I I T  T+N +++
Sbjct: 483 EKNIQIKINVSDNLPKVRADHTKIGWVVSNLVGNALRYTPTDGTGVINIETKQTAN-KIV 541

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
             V D G G++    +     F Q+   +  +  G GLGL +++ +V A+ G  ++ S  
Sbjct: 542 TSVTDNGSGISEEYQKIIFDKFLQVNGGESTQ-GGAGLGLAISREIVRAHGGDMWVDSEL 600

Query: 799 AKGTLIEIIF 808
            +G+      
Sbjct: 601 GEGSTFYFTL 610


>gi|299148396|ref|ZP_07041458.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
 gi|298513157|gb|EFI37044.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
          Length = 936

 Score =  321 bits (823), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 100/520 (19%), Positives = 196/520 (37%), Gaps = 31/520 (5%)

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIE 361
           L        +   D  E L        P    +Y   G L   N   L +    +  D+ 
Sbjct: 423 LDSTGSVQANRALDRSEKLFQNIFANIPAGVEIYDKDGYLIDLNNKDLEIFGVVNKSDVI 482

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                        + D    + ++ +R +    +        + NR N++ +     +  
Sbjct: 483 GVNFFDNPNVPQNIRDRVRNEDLVDFRLN---YSFEQAEGYYETNRSNAIELYSKVSKLY 539

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA---IINREGIILSTN 478
           +          I  ++ +      ++         I +    G A   ++NR+G  +   
Sbjct: 540 DNEGNFSGYILISIDNTERIDAMNRIRDFENFFLMISDYAKVGYAKLNLLNRKGYAI--- 596

Query: 479 RAVSKLFGYPVEDILRKPFTVF--LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
           +   K  G   + +L +   V+  +          +  E+     R+  +          
Sbjct: 597 KQWYKNLGEEEDTLLDEVVGVYTQMHPEDRKRFLDFYDEVR-DGKRRHFQGEMRIRRPGT 655

Query: 537 K--LLSLRIIIK-----KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
           K     +   +                  +DI+E K+ + +L  A+  AE     KS FL
Sbjct: 656 KNEWNWVSSNVMVTNYKPEENEIEIIGINYDITELKETEAELIQARDKAEMMDRLKSAFL 715

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
           A +SHEIRTPL AI+GFS+++              EY   +  + +L+L +++D+LD+SK
Sbjct: 716 ANMSHEIRTPLNAIVGFSDLLVETEELS----ERQEYIKIVRENNDLLLQLISDILDLSK 771

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709
           IE+G        V ++    + +  + + A E+ + +       +  +++D   + Q+  
Sbjct: 772 IEAGTFEFTNGDVDVNLLCEDIVRSMGMKAKEE-VELVLDNHLPVCHVISDRNRIHQVIS 830

Query: 710 NILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
           N ++NA+ FT  G  I +        E+   V DTG+G+   +L    + F ++ +    
Sbjct: 831 NFVNNAMKFTSEGS-IHVGYKLKD-GELEFYVEDTGIGIEKEQLPHIFERFVKLNSFVH- 887

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
              GTGLGL + +++V+   G+  + S   KG+      P
Sbjct: 888 ---GTGLGLSICQSIVEQLGGRIGVDSEKGKGSRFWFTIP 924



 Score = 48.1 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/152 (14%), Positives = 50/152 (32%), Gaps = 6/152 (3%)

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG-YP 488
             G+  +   +    R ++       +I      G+ I +++G ++  N    ++FG   
Sbjct: 418 IVGLFLDSTGSVQANRALDRSEKLFQNIFANIPAGVEIYDKDGYLIDLNNKDLEIFGVVN 477

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK-ITLGSTKEEKLLSLRIIIKK 547
             D++   F                 +++   L  + E+      T     + L   + K
Sbjct: 478 KSDVIGVNFFDNPNVPQNIRDRVRNEDLVDFRLNYSFEQAEGYYETNRSNAIELYSKVSK 537

Query: 548 LPFSS----CYSLTMHDISEWKQEKNKLSHAK 575
           L  +      Y L   D +E     N++   +
Sbjct: 538 LYDNEGNFSGYILISIDNTERIDAMNRIRDFE 569


>gi|108759669|ref|YP_629805.1| sensory box histidine kinase [Myxococcus xanthus DK 1622]
 gi|108463549|gb|ABF88734.1| sensory box histidine kinase [Myxococcus xanthus DK 1622]
          Length = 706

 Score =  321 bits (823), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 115/649 (17%), Positives = 212/649 (32%), Gaps = 54/649 (8%)

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK-YPLLTSE 265
           L         V     ++   Q      +       L E               PL    
Sbjct: 60  LARDSGTERWVCLAARNLSEAQRDALAFQPGETSHPLAETLTQGAPRFFAAPCAPLPAVG 119

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNS-KESFEYLSHRNHPSLSAYFDEGENLTPE 324
             ++P                       + +   +                  G  L   
Sbjct: 120 CIAVPLGRPGAPAAGLLLLSADGPTLTPDAAWVSAHVGPRLAAMLPTEDREVAGGELLRR 179

Query: 325 TVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLS---TLLDAPKLSDNNA 380
            +D    P  +    G    AN    +L                    +  +   S  + 
Sbjct: 180 IIDTVADPVLLTDLEGRPHIANARAEVLLVAGPDASEGRRRATELNRQVFSSALASFASG 239

Query: 381 IKPVMLYRSDRTCIAAS-------ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
               +  R                     +         ++ +                 
Sbjct: 240 DTSTVRRREVPLVDPVEGIDLLFEVVSTPVLQPDGRESLVSVMRNVTDLGRATQALGESY 299

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
                  R  +R+   E  +L  +L++  D + + +  G ++  N    KLF    +   
Sbjct: 300 RR----LRDTEREARSERHRLDRVLDSVPDPLILSDPAGGMVMMNSPAEKLFATHPDS-- 353

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553
            +     L  N  S  +     + +    +   ++ L        L +  +  K+   S 
Sbjct: 354 GEAALRRLRSNNASFSSFLANLLDAEGRPRWRGQLGLVDPATGATLPMEAVANKVLGDSG 413

Query: 554 ----YSLTMHDISEWKQEKNKLSHAKK----------------------------IAEKE 581
                    HD SE  ++   L   K+                              E+ 
Sbjct: 414 ELTGIVTLFHDRSEALEKARLLERVKEGSVHLEARVQAATAELAEQNEMLRRQAIQVEQA 473

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
           S+ KS FLA +SHE RTPL AI+G++ ++     G L NP        ID +G  +L+++
Sbjct: 474 SAAKSQFLANMSHEFRTPLNAILGYTNMLLQGVSGEL-NPAQKRNLTRIDSNGRHLLEVI 532

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701
           N++LDI++IE+G+M L+     + E + E ++ +       ++ +       +P + +D 
Sbjct: 533 NEILDITRIEAGRMPLNLSDFGIPELLQEVMAEMDPIIARSKLTVSAHLGPRVPAVYSDR 592

Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-VILRVRDTGVGMTNYELEKAMKPF 760
           + VKQI LN+LSNA+ FT  G  + +   + +    + + V DTG+G+     EK  + F
Sbjct: 593 QKVKQIVLNLLSNALKFTHEGS-VQVQAEYVAATSTLTISVTDTGIGIDPANQEKIFEDF 651

Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            Q+ +S      GTGLGL + + +     G+  + ST  +G+   + FP
Sbjct: 652 QQVDSSPTRAYGGTGLGLSICRRLATMLGGRVTLQSTQGEGSTFTLHFP 700


>gi|301385098|ref|ZP_07233516.1| PAS [Pseudomonas syringae pv. tomato Max13]
          Length = 1046

 Score =  321 bits (823), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 127/689 (18%), Positives = 242/689 (35%), Gaps = 59/689 (8%)

Query: 149 LWPIEGTNLYVPIDLAALPI--YSRNREFSGFRG--FGIVHVNRVDNDPRALGKRL---- 200
            W  +   + V ++ A  P+  +     F G       +V +             L    
Sbjct: 282 RWIAQHPVVRVVVNEAYAPLTFFDAKGNFRGITADLLELVRLRTGLKFDVKRSPSLTDMQ 341

Query: 201 ----DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256
               + +   +  +       ++  +      +    +  K+K S           +  T
Sbjct: 342 NQVSEGQADMIGALVSSDVREDRLSFSRPYIDNSFVLVTRKDKGSPSYLEQMDGKRLAIT 401

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
           +  P+L       P        N  Q       G  +                       
Sbjct: 402 QGSPMLDWLRRKYPRVVPLEIDNPFQALDMLAVGRTEGAVVSLLSADY------------ 449

Query: 317 EGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
                            F               L++   S + +E++  L   L +    
Sbjct: 450 -----------FLSSGIFEERLQMTATVGEDPALISMATSRNALELSSILDKALASIAPQ 498

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           D  AI       +            +  W+    L    +           +    +  +
Sbjct: 499 DLAAINNRWRAYTP----------SSASWHDYQRLIYQIVIGAGLLLLGLLVWNAWMRRQ 548

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
                  +R +  +   + ++++ T   I + +R+G++   N +  + F    EDI+ K 
Sbjct: 549 IRQREAAERALSDQYEFMRALVDGTPHPIYVRDRDGLLQMCNDSYLRAFSAQREDIIGKS 608

Query: 497 FTVFLEQNTPSV--MNHYLTEILSLDLRQTLEKITLGSTKEEKLL-SLRIIIKKLPFSSC 553
            T  +  N             +++ +    L++      ++  +   +      L     
Sbjct: 609 ATERVLGNAFEAREYAADYQRVMASNTALILDRPLHIGDRQLTIYHWILPFRDSLGEVQG 668

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
                 DIS+ +Q    L  AK+ A+  S  KS FLA +SHEIRTP+ A+IG  E+   +
Sbjct: 669 IIGGWIDISDRRQLIEDLQAAKEQADAASRAKSTFLATMSHEIRTPMNAVIGMLELALKR 728

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
                 +            S N +LD++ D+LDI++IESG++ L+ E  +L + V   + 
Sbjct: 729 ADQGELD---RSAIEVAYSSANDLLDLIGDILDIARIESGRLALNPERANLRQLVESVLR 785

Query: 674 LVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
           +    A +K + +     + I   +L D    KQI  N++SNAI FTP G ++ I+    
Sbjct: 786 VFDGLARQKDLDLVLELDSRINTDVLIDPLRFKQILSNLVSNAIKFTPMG-RVKIALQAV 844

Query: 733 SNE-----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
            N       + + V+D+G+G++  + ++  +PF Q  N+ Q+   G GLGL + +++   
Sbjct: 845 DNPDPQLLHLHITVQDSGIGISVEDQKRLFEPFAQADNTGQMARTGAGLGLVICRSLCMM 904

Query: 788 NMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
             G   + S P  GT I +   L  T  P
Sbjct: 905 MGGNLSLDSEPGNGTRISMNL-LLTTLEP 932



 Score = 41.2 bits (95), Expect = 0.79,   Method: Composition-based stats.
 Identities = 29/231 (12%), Positives = 57/231 (24%), Gaps = 8/231 (3%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCD--VSDILHIDPNNHIGDLLKRQNTWYGKT 147
           D  G L+  ++   +        +IG    +  + +             +   NT     
Sbjct: 581 DRDGLLQMCNDSYLRAFSAQREDIIGKSATERVLGNAFEAREYAADYQRVMASNTALILD 640

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
               I    L +   +  LP      E  G  G  I              +   ++    
Sbjct: 641 RPLHIGDRQLTIYHWI--LPFRDSLGEVQGIIGGWI--DISDRRQLIEDLQAAKEQADAA 696

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
              K    +    +            L +  K +   E      +V  +    LL     
Sbjct: 697 SRAKSTFLATMSHEIRTPMNAVI-GMLELALKRADQGELDRSAIEVAYSSANDLLDLIGD 755

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
            L +     +  L    ++     L  +    F+ L+ +    L    D  
Sbjct: 756 IL-DIARIESGRLALNPERANLRQLVESVLRVFDGLARQKDLDLVLELDSR 805


>gi|320107290|ref|YP_004182880.1| PAS/PAC sensor signal transduction histidine kinase [Terriglobus
            saanensis SP1PR4]
 gi|319925811|gb|ADV82886.1| PAS/PAC sensor signal transduction histidine kinase [Terriglobus
            saanensis SP1PR4]
          Length = 1089

 Score =  321 bits (823), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 111/742 (14%), Positives = 254/742 (34%), Gaps = 42/742 (5%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI-----DPNNHIGDLLKRQNTW 143
            ++  G +  ++ +  K  G +  +++G  + ++           D      + L +Q   
Sbjct: 362  VNRSGNIVLLNIQAEKKFGYHRDELVGQPVKNIIPQGFAERLIADETRTATEALAQQIGT 421

Query: 144  YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
              +      +G+    PI+L   P+ S             +    V         +++ +
Sbjct: 422  GIELIALRKDGS--EFPIELMLSPLESAEDILVTAA----IRDISVRKAAEVHLAQMESR 475

Query: 204  FSHLHEIKKGHSSV---EKEKYDIFSQQSPPPHLRMKNKVS-SLTEYYAHKDDVLKTEKY 259
            +  L E       V   E     +  Q       R    V  ++T               
Sbjct: 476  YRGLLEAAPDAMVVVNQEGAIVLLNVQAEKQFGYRRDELVGQAVTNIIPEGFAERIIADG 535

Query: 260  PLLTSEESSLPE----QEDFHTINLNQYTKKQYFGTLQNNSK--ESFEYLSHRNHPSLSA 313
                +E  +       +      + +Q+  +     L++      +          +   
Sbjct: 536  TRSAAEALAQQIGTGIELIACRKDGSQFPIEIMLSPLESQEGILVTAAIRDISVRNAAEL 595

Query: 314  YFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
            +  + E      ++  P     V   G +   N        Y+  + +  A  ++ ++  
Sbjct: 596  HLAQMEGRYRGLLEAAPDAMVVVNQEGAIVLLNVQAEKQFGYRRDELVGQA--VTNIIPE 653

Query: 373  PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
                   A        +    I     L   + +                +  E +    
Sbjct: 654  GFAERIIADGTRSAAEALAQQIGTGIELIASRKDGSQF---PIEIMLSPLESQEGILVTA 710

Query: 433  IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
               +       +  +     +   +LEA  D + ++N+EG I+  N    K FGY  +++
Sbjct: 711  AIRDISVRNAAELHLAQMESRYRGLLEAAPDAMVVVNQEGAIVLLNVQAEKQFGYLRDEL 770

Query: 493  LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPF 550
            L +  T  + +     +    T      L Q +      +   K+     + I++  L  
Sbjct: 771  LGQKMTNIIPEGFAERIIADGTRSADDALAQKIGTGIELIARRKDGSEFPIEIMLSPLIS 830

Query: 551  SSCYSLT--MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                 +T  + DIS  K  +  L H  +   + +     F    SH+++ PL  +  +++
Sbjct: 831  PEGTLVTTAIRDISVRKDAEAHLLHKVEQLNRSNEELGHFAYIASHDLQEPLRMVASYTQ 890

Query: 609  VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES-GKMNLHFEPVSLDEA 667
            ++  +  G L +    E+  +     + +  ++ DLL  S++E+ GK  L       +EA
Sbjct: 891  LLARRYKGRLDSD-ADEFIAFAVDGASRMQRLIKDLLTFSRVETMGKQPLVISS---EEA 946

Query: 668  VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG-GQII 726
            +++++  ++        +I       +P +LAD   + Q+  N+++N I +  +G  ++ 
Sbjct: 947  LNQSLRNLRGAIEGSGAVITY---GPLPTVLADETQLIQLFQNLVANGIKYHTTGIPRVH 1003

Query: 727  ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
            IS      ++    V+D G+G+ +   EK    F ++    +   +GTG+GL + K +V+
Sbjct: 1004 ISAHLDVAKKWEFSVKDNGMGIDSQYFEKIFGMFQRLHK--REEFDGTGIGLAICKKIVE 1061

Query: 787  ANMGKFYIFSTPAKGTLIEIIF 808
             + G   + S    G+      
Sbjct: 1062 RHGGVLSVQSELQHGSTFSFSL 1083



 Score =  155 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 55/510 (10%), Positives = 136/510 (26%), Gaps = 21/510 (4%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR---QNT 142
            + +D  G +   +    +     A +++G     +    +   +  + +LL+       
Sbjct: 239 IFALDPLGKIISWNAGAERISAYKADEVVGENFS-LFFPTNDVADGRLEELLRVTALHGR 297

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK---R 199
              +      +G+     + L AL         SG+    I        +  A  +    
Sbjct: 298 REEEGICVRKDGSRFLASVALTAL--KDSEGTLSGYS--VISRDLTESKESEARYRGLLE 353

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
                  +         +  +    F         +    +           D  +T   
Sbjct: 354 AAPDAMVVVNRSGNIVLLNIQAEKKFGYHRDELVGQPVKNIIPQGFAERLIADETRTATE 413

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
            L     + +         +               +   +          +   +  + E
Sbjct: 414 ALAQQIGTGIELIALRKDGSEFPIELMLSPLESAEDILVTAAIRDISVRKAAEVHLAQME 473

Query: 320 NLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
           +     ++  P     V   G +   N        Y+  + +  A  ++ ++        
Sbjct: 474 SRYRGLLEAAPDAMVVVNQEGAIVLLNVQAEKQFGYRRDELVGQA--VTNIIPEGFAERI 531

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
            A        +    I     L   + +                +  E +       +  
Sbjct: 532 IADGTRSAAEALAQQIGTGIELIACRKDGSQF---PIEIMLSPLESQEGILVTAAIRDIS 588

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
                +  +     +   +LEA  D + ++N+EG I+  N    K FGY  ++++ +  T
Sbjct: 589 VRNAAELHLAQMEGRYRGLLEAAPDAMVVVNQEGAIVLLNVQAEKQFGYRRDELVGQAVT 648

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTL--EKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556
             + +     +    T   +  L Q +      + S K+     + I++  L       +
Sbjct: 649 NIIPEGFAERIIADGTRSAAEALAQQIGTGIELIASRKDGSQFPIEIMLSPLESQEGILV 708

Query: 557 T--MHDISEWKQEKNKLSHAKKIAEKESSH 584
           T  + DIS     +  L+  +         
Sbjct: 709 TAAIRDISVRNAAELHLAQMESRYRGLLEA 738



 Score =  111 bits (277), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 48/390 (12%), Positives = 115/390 (29%), Gaps = 19/390 (4%)

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
            ++   + E        ++E      + S         ++S    +       L+  K  
Sbjct: 106 QQQRLSVVETLASRRIRQRETTIELRRSSGFAAALATFQISVEDPFPGQFQTALQDLKEQ 165

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
            L   E    + +               F  L   +    +   H     ++   +  E 
Sbjct: 166 ELHLLEVRQDQSKTRLHQAKTVLALGTLFTFLLACAAWWSKRTDHSRQELVTEELEVSEE 225

Query: 321 LTPETVDKCPI-PFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
                ++       F     G +   N     ++ YK+ + +     L        ++D 
Sbjct: 226 RYRLLLEGIKDYAIFALDPLGKIISWNAGAERISAYKADEVVGENFSL--FFPTNDVADG 283

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
              + + +                ++ +    LA +       +        + I  +  
Sbjct: 284 RLEELLRVTALHGRR---EEEGICVRKDGSRFLA-SVALTALKDSEGTLSGYSVISRDLT 339

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
           +++           +   +LEA  D + ++NR G I+  N    K FGY  ++++ +P  
Sbjct: 340 ESK-------ESEARYRGLLEAAPDAMVVVNRSGNIVLLNIQAEKKFGYHRDELVGQPVK 392

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTL--EKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556
             + Q     +    T   +  L Q +      +   K+     + +++  L  +    +
Sbjct: 393 NIIPQGFAERLIADETRTATEALAQQIGTGIELIALRKDGSEFPIELMLSPLESAEDILV 452

Query: 557 T--MHDISEWKQEKNKLSHAKKIAEKESSH 584
           T  + DIS  K  +  L+  +         
Sbjct: 453 TAAIRDISVRKAAEVHLAQMESRYRGLLEA 482


>gi|60680336|ref|YP_210480.1| putative two-component system sensor histidine kinase [Bacteroides
           fragilis NCTC 9343]
 gi|60491770|emb|CAH06528.1| putative two-component system sensor histidine kinase [Bacteroides
           fragilis NCTC 9343]
          Length = 919

 Score =  321 bits (823), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 106/644 (16%), Positives = 232/644 (36%), Gaps = 35/644 (5%)

Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS 242
           I    R   D     +   +       +     ++ ++   +           + +++  
Sbjct: 283 ICIELRKAKDEAVRERSFLRNLFRFMPMGYIRMTMVRDAAGLPCDYRIADANDLSSELIG 342

Query: 243 LTEYYA------HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS 296
           ++                K +   LL   E S+ ++ D +     + +    +   ++  
Sbjct: 343 MSLSDYVGCLASELHADFKAKVDYLLDVMEGSVHKETDVYFHRTQRSSHCIVYSPEKDEV 402

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYK 355
              F  L            D  E L        P    +Y   GNL   N   +     K
Sbjct: 403 VALF--LDSTETIRAHRALDRSEKLFKNIFANIPAGVEIYDKDGNLLDLNNWDMETFGVK 460

Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
              D+             ++ +    + ++ +R +    + +        ++ N + +  
Sbjct: 461 DKADVMGVNFFENPNVPLEIRERVRNEDLVDFRLN---YSFNKASDYYHSDKSNIIELYT 517

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA---IINREG 472
              +  +          I  ++ +      ++         I +    G A   ++++ G
Sbjct: 518 KVSKLFDSQGNFNGYVLINIDNTERIDAINRIRDFENFFLLISDYAKVGYAKLNLLSKRG 577

Query: 473 I-ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
             I    + + +    P+  ++       +       +  +  ++L+ + +    ++ + 
Sbjct: 578 YAIKQWFKNMGETEDIPLSSVVG--VYDKMHPEDRQKVFDFYEKVLAGEEKDFRSEMRIL 635

Query: 532 STK---EEKLLSLRIIIKKLPFSSC---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
                 E   + + +++ K              +DI+E K+ +  L  AK+ AE     K
Sbjct: 636 KPGATNEWNWVRMNVVVTKFEPEHGEVEIIGINYDITELKETEAMLIEAKEKAETMDRLK 695

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
           S FLA +SHEIRTPL AI+GFS ++ +            EY   +  + +L+L +++D+L
Sbjct: 696 SAFLANMSHEIRTPLNAIVGFSGLLVDTE----DMEERCEYIKIVQENNDLLLQLISDIL 751

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
           D+SKIE+G     +    ++    + +   Q+   +  I +      +   +++D   + 
Sbjct: 752 DLSKIEAGTFEFTYGETDVNMLCEDIVRSSQIKVPQ-GIELVFDPHPSDCTVISDRNRLH 810

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           Q+  N ++NA+ FT SG  I +         V   V DTG+G++  +L    + F ++ +
Sbjct: 811 QVISNFVNNALKFTSSGS-IHVGYEKKEEG-VEFYVSDTGIGISKEQLTHIFERFVKLNS 868

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
                  GTGLGL + K++V+   G   + S   KG       P
Sbjct: 869 FIH----GTGLGLSICKSIVEQLGGVIGVDSEEGKGARFWFTIP 908


>gi|224476782|ref|YP_002634388.1| putative alkaline phosphatase synthesis sensor protein
           [Staphylococcus carnosus subsp. carnosus TM300]
 gi|222421389|emb|CAL28203.1| putative alkaline phosphatase synthesis sensor protein
           [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 569

 Score =  321 bits (823), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 89/397 (22%), Positives = 169/397 (42%), Gaps = 31/397 (7%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRIN--KRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
                   +      +   ++  R+     + +I+  +L + LE     + +I++ G I+
Sbjct: 190 IRVPESNVKETRALFVTTNELARRLQKMHNEQKIQSNRLKTTLENIPSSVLMIDKYGKIV 249

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
             N A   +F  P   ++ K +   +       +N  +      +     +     +   
Sbjct: 250 VANTAYYDMFN-PETSVVNKNYNRVI----QGKLNTLIINAFKTEKTINEQVEIYINNVH 304

Query: 536 EKLLSLRIIIKKLPFS---SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
           EK      +              + +HDI+  K+ +              + + +F+A V
Sbjct: 305 EKYFDTACVPILSRNKKRLQGMVVVLHDITSLKKLE--------------NLRREFVANV 350

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNP-RYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           SHE++TP+T+I GF+E + +   G   +     E+ N I +  N +  +V DLLD+S IE
Sbjct: 351 SHELKTPITSIKGFAETLID---GAKNDENSLDEFLNIILKESNRIESLVEDLLDLSHIE 407

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
             +  +  E V L E     ++ +  YA  K I I     N++  I A+   + Q+  N+
Sbjct: 408 -QQTEIRTERVDLSEVTQTTVNTLYAYAQRKAIEIDAEIQNHV-MIDAEASKIAQVVTNL 465

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           +SNAI+++     + +      ++ + L V D G+G+   E +   + F ++  ++    
Sbjct: 466 VSNAINYSSDESTVYVRVYQKDDKRI-LEVEDHGIGIAPEEQKHVFERFYRVDKARSRDS 524

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            GTGLGL + K +V+A  G+  I S P  GT   IIF
Sbjct: 525 GGTGLGLSITKHIVEAYQGRIQIESEPDVGTTFRIIF 561


>gi|218691500|ref|YP_002399712.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           ED1a]
 gi|218429064|emb|CAR09871.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli ED1a]
          Length = 778

 Score =  321 bits (823), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 86/438 (19%), Positives = 180/438 (41%), Gaps = 21/438 (4%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L +           L  +Q     +     I   +  +         ++ E
Sbjct: 81  EESRQRLSRLVQKLEEMRERDLSL-NVQLKDNIAQLNQEIAVREKAEAELQETFGQLKIE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             +    + ++E +   L S L+A+ D +   N +      NRA+  L G   + ++   
Sbjct: 140 IKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCY 554
                     + +     ++   ++  T E+        +    +R +    ++      
Sbjct: 200 PADVYSPEAAAKVIETDEKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGL 259

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+        +   E+ S  K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 260 MGFGRDITERKR-------YQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE 312

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     +Y   I  S   + +I ND++D+ K+E  K+ L  +PV     +++  +L
Sbjct: 313 LTA----EQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENL 368

Query: 675 VQLYANEKRILIRTSFANNIP---RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
             L A +K   +R +    +P   +++ D   ++QI  N++SNA+ FT  G Q+ +   +
Sbjct: 369 SALQAQQKG--LRFNLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQG-QVTVRVRY 425

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMG 790
              + +   V D+G+G+   EL+K    + Q+ +S   +   GTG+GL +++ +     G
Sbjct: 426 DEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGG 485

Query: 791 KFYIFSTPAKGTLIEIIF 808
              + S   KG+   +  
Sbjct: 486 DIMVTSEQGKGSTFTLTI 503


>gi|329888454|ref|ZP_08267052.1| sensory box protein [Brevundimonas diminuta ATCC 11568]
 gi|328847010|gb|EGF96572.1| sensory box protein [Brevundimonas diminuta ATCC 11568]
          Length = 536

 Score =  321 bits (823), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 98/367 (26%), Positives = 167/367 (45%), Gaps = 13/367 (3%)

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
           L +  + + D + I + EG I+  + + + + GY  E+++  P    +  +        +
Sbjct: 25  LATFFDVSLDLLVIRDLEGRIVRVSASWASILGYRPEELVGLPILTLVHPDDMPGTLGSV 84

Query: 514 TEILSLD-LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572
           TE+ +       L  +     K+ + ++L    +K            D++     +  L 
Sbjct: 85  TEVETRRPGDPVLGHVNRYRHKDGRYVTLEWRAQKFGD--RIYAVARDVTAKVAAERALV 142

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
            AK  AE  +  KSDFLA +SHEIRTPL  +IG  + +      P    +  E    +  
Sbjct: 143 EAKAAAETANRAKSDFLANMSHEIRTPLNGVIGVIDALARTPLSP----QQAEMVELVRS 198

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
           S   +  +V D+LD+S+IESG+M L   P  L++A+  AI+ ++  A EK +  R   A 
Sbjct: 199 SSVTLERLVTDILDVSRIESGRMTLETRPFDLNDALIPAIAPLRGLAEEKGLTFRLERAE 258

Query: 693 NIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVG 747
           +   +   D+  V+QI  N+LSNA+ FT  G Q+ +        +    + L VRDTG+G
Sbjct: 259 SACGVFNGDVVRVRQILGNLLSNAVKFTAQG-QVSVHVDLLDRGDGAVLLTLEVRDTGIG 317

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
                  +  + F Q   S   R  G GLGL +  A+ +   G+    S P +G+  ++ 
Sbjct: 318 FGADHAAQLFQRFSQADASITRRFGGAGLGLSICHALTEMMGGRIEAESAPGEGSRFQVE 377

Query: 808 FPLYDTS 814
            PL   +
Sbjct: 378 LPLTRIA 384



 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/286 (8%), Positives = 64/286 (22%), Gaps = 28/286 (9%)

Query: 48  SFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIG 107
           +   +  +   Q        +D    F        +R     D  G +  +S      +G
Sbjct: 4   TPAAAP-SSTGQPQPPPDAGVDLATFFDVSLDLLVIR-----DLEGRIVRVSASWASILG 57

Query: 108 NYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNT----WYGKTTLWPIEGTNLYVPIDL 163
               +++G+ +  +     +         ++ +                +G   YV ++ 
Sbjct: 58  YRPEELVGLPILTLVHPDDMPGTLGSVTEVETRRPGDPVLGHVNRYRHKDGR--YVTLEW 115

Query: 164 AALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYD 223
            A             R + +                        +  K    +    +  
Sbjct: 116 RAQKFGD--------RIYAVARDVTAKVAAERALVEAKAAAETANRAKSDFLANMSHEIR 167

Query: 224 IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT-SEESSLPEQEDFHTINLNQ 282
                   P   +   + +L             E     + + E  + +  D   I   +
Sbjct: 168 -------TPLNGVIGVIDALARTPLSPQQAEMVELVRSSSVTLERLVTDILDVSRIESGR 220

Query: 283 YTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
            T +     L +    +   L          +  E         + 
Sbjct: 221 MTLETRPFDLNDALIPAIAPLRGLAEEKGLTFRLERAESACGVFNG 266


>gi|322387745|ref|ZP_08061354.1| sensor histidine kinase VicK [Streptococcus infantis ATCC 700779]
 gi|321141612|gb|EFX37108.1| sensor histidine kinase VicK [Streptococcus infantis ATCC 700779]
          Length = 449

 Score =  321 bits (822), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 88/376 (23%), Positives = 166/376 (44%), Gaps = 33/376 (8%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           R+ +  +E E  +L SIL   +DG+   NR G I   N    +  G   +D L +     
Sbjct: 83  RLTQENLEQESKRLHSILSYMTDGVLATNRRGQITMINDMAKRQLGVESDDALNQNILEL 142

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SL 556
           L+      +   +         Q+ E +        + +SLR+    +   S +      
Sbjct: 143 LKIEDEYELRDLI--------TQSPEMMIYSQNVNGEYISLRVRFALIRRESGFISGLVA 194

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            +HD +E ++E+ +                 F++ VSHE+RTPLT++  + E +     G
Sbjct: 195 VLHDTTEQEKEERERRL--------------FVSNVSHELRTPLTSVKSYLEAL---DEG 237

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV- 675
            L  P   ++        N ++ +V DLL +S+I++   +L  E ++    ++  ++   
Sbjct: 238 ALYEPVAPDFIKVSLNETNRMMRMVTDLLHLSRIDNATSHLDVELINFTAFITFILNRFD 297

Query: 676 --QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
             +    EK+  +   +      I  D   + Q+  NIL+NAI ++P GG+I ++   T 
Sbjct: 298 KMRSQDQEKKYELVRDYPITSVWIEIDTDKMTQVIDNILNNAIKYSPDGGKITVTMKTTD 357

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
           ++ + L + D G+G+   +L K    F ++  ++     GTGLGL +AK ++  + G  +
Sbjct: 358 DQMI-LSISDQGLGIPKEDLPKIFDRFYRVDKARSRAQGGTGLGLAIAKEIIKQHNGFIW 416

Query: 794 IFSTPAKGTLIEIIFP 809
             S   KG+   I+ P
Sbjct: 417 AKSEYGKGSTFTIVLP 432


>gi|325571476|ref|ZP_08146976.1| sensor histidine kinase VicK [Enterococcus casseliflavus ATCC
           12755]
 gi|325155952|gb|EGC68148.1| sensor histidine kinase VicK [Enterococcus casseliflavus ATCC
           12755]
          Length = 613

 Score =  321 bits (822), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 91/419 (21%), Positives = 181/419 (43%), Gaps = 31/419 (7%)

Query: 396 ASARLHTIQWN-RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
              R   I+    + S  +     ++  Q  E   Q G   E+         ME E  +L
Sbjct: 211 GEMREQAIRIAKGDYSRKVAIHGKDELGQLAETFNQLGERIEETQE-----AMESERNRL 265

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
            S+L   +DG+   +R G +++ N     L     E+ + +     LE +        L 
Sbjct: 266 DSVLSHMTDGVVATDRRGKVITINEMAMSLLNVTNEEAIGQSILTILEIDEEYT----LR 321

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLS 572
           ++L       LE+ +   T    +L +   + +      S     MHD++E ++ + +  
Sbjct: 322 KLLENPEDMLLERPSNDLTGTNLILRIDFSMIRRESGFISGLVAVMHDVTEQEKNEQE-- 379

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
                       + +F++ VSHE+RTPLT++  + E +    +          +      
Sbjct: 380 ------------RREFVSNVSHELRTPLTSMRSYIEALSEGAW--KDPEIAPNFLKVTLD 425

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA--NEKRILIRTSF 690
             + ++ ++NDLL +S+++SG   L  E ++ +E V+  +    +      K+ LIR  F
Sbjct: 426 ETDRMIRMINDLLSLSRMDSGNSQLQLEYINFNEMVNFVLDRFDMMVTNESKKYLIRREF 485

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
                 +  D   + Q+  NI++NAI ++P GG I +     ++  ++L + D G+G+  
Sbjct: 486 TKRELWVEVDTDKMIQVIDNIMNNAIKYSPDGGIITVKL-METHNNIVLSINDQGLGIPK 544

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            +L K    F ++  ++  +  GTGLGL +++ ++ A+ G  +  S   +G+   I+ P
Sbjct: 545 KDLTKIFDRFYRVDKARARQQGGTGLGLAISREVIKAHGGAIWAESRENRGSTFYIMLP 603


>gi|261211475|ref|ZP_05925763.1| aerobic respiration control sensor protein ArcB [Vibrio sp. RC341]
 gi|260839430|gb|EEX66056.1| aerobic respiration control sensor protein ArcB [Vibrio sp. RC341]
          Length = 782

 Score =  321 bits (822), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 87/400 (21%), Positives = 168/400 (42%), Gaps = 23/400 (5%)

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
            +E E       + ++      L S ++A+ D I   N +G     NRA+ +L G    +
Sbjct: 135 DLENEVYQREKTQVELAERTALLRSFIDASPDLIYYRNAKGEFSGCNRAMEELTGKRESE 194

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
           ++         +     +      + + +   T E+        +    LR +       
Sbjct: 195 LVGLTPWDVYRKEIAQSIVETDQRVFNNNTAITYEQWLEYPDGRKSFFELRKVPFYSKDG 254

Query: 552 S--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                     DI+E K+ +  L       EK S  K+ F++ +SHE+RTPL  I+G S +
Sbjct: 255 RHLGLVGFGRDITERKRHEESL-------EKASRDKTTFISTISHELRTPLNGIVGLSRM 307

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           + +            ++   I+ S   + +I ND++D+ K +  K+ L    ++ +E V+
Sbjct: 308 LLDTPLSG----EQRKHLQTINVSAVTLGNIFNDIIDMDKFDRRKLELFPAALNFEEFVA 363

Query: 670 EAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI-II 727
           E   L  L A +K +        ++P  +  D   ++Q+  N++SNA+ FT  GG +  +
Sbjct: 364 EIEVLAALMAEQKGLRFDLERLTDLPSLVEVDATRLRQVLWNLISNAMKFTKDGGVVMTV 423

Query: 728 STTH-TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGEGTGLGLPLAKAMV 785
           S      + ++ + V DTG+G+   E EK    + Q+ + +      GTG+GL +++ ++
Sbjct: 424 SAECDEQHADITIEVEDTGIGIPEAEQEKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLI 483

Query: 786 DANMGKFYIFSTPAKGTLIEIIF--PLYD----TSHPHDC 819
               G   + S    G+   +    PL +    T  P + 
Sbjct: 484 KLMGGDISVNSEEGFGSTFTVTMRVPLLEEAPLTEEPQES 523



 Score = 43.9 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 60/237 (25%), Gaps = 18/237 (7%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           +A G     +  + +  G    +++G+   DV               +   NT       
Sbjct: 172 NAKGEFSGCNRAMEELTGKRESELVGLTPWDVYRKEIAQSIVETDQRVFNNNTAITYE-Q 230

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
           W           +L  +P YS++    G  GFG               ++  +  +    
Sbjct: 231 WLEYPDGRKSFFELRKVPFYSKDGRHLGLVGFG--RDITERKRHEESLEKASRDKTTFIS 288

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY--------------AHKDDVLK 255
                           S+      L  + +    T                   K D  K
Sbjct: 289 TISHELRTPLNGIVGLSRMLLDTPLSGEQRKHLQTINVSAVTLGNIFNDIIDMDKFDRRK 348

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
            E +P   + E  + E E    +   Q   +     L +      E  + R    L 
Sbjct: 349 LELFPAALNFEEFVAEIEVLAALMAEQKGLRFDLERLTDL-PSLVEVDATRLRQVLW 404


>gi|331659497|ref|ZP_08360439.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           TA206]
 gi|315297924|gb|EFU57194.1| PAS domain S-box [Escherichia coli MS 16-3]
 gi|331054079|gb|EGI26108.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           TA206]
          Length = 778

 Score =  321 bits (822), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 85/438 (19%), Positives = 179/438 (40%), Gaps = 21/438 (4%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L +           L  +Q     +     I   +  +         ++ E
Sbjct: 81  EESRQRLSRLVQKLEEMRERDLSL-NVQLKDNIAQLNQEIAVREKAEAELQETFGQLKIE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             +    + ++E +   L S L+A+ D +   N +      NRA+  L G   + ++   
Sbjct: 140 IKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCY 554
                     + +     ++   ++  T E+        +    +R +    ++      
Sbjct: 200 PADVYSPEAAAKVIETDEKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGL 259

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+        +   E+ S  K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 260 MGFGRDITERKR-------YQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE 312

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     +Y   I  S   + +I ND++D+ K+E  K+ L  + V     +++  +L
Sbjct: 313 LTA----EQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQLVDFTSFLADLENL 368

Query: 675 VQLYANEKRILIRTSFANNIP---RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
             L A +K   +R +    +P   +++ D   ++QI  N++SNA+ FT  G Q+ +   +
Sbjct: 369 SALQAQQKG--LRFNLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQG-QVTVRVRY 425

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMG 790
              + +   V D+G+G+   EL+K    + Q+ +S   +   GTG+GL +++ +     G
Sbjct: 426 DEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGG 485

Query: 791 KFYIFSTPAKGTLIEIIF 808
              + S   KG+   +  
Sbjct: 486 DITVTSEQGKGSTFTLTI 503


>gi|271498888|ref|YP_003331913.1| multi-sensor hybrid histidine kinase [Dickeya dadantii Ech586]
 gi|270342443|gb|ACZ75208.1| multi-sensor hybrid histidine kinase [Dickeya dadantii Ech586]
          Length = 779

 Score =  321 bits (822), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 93/448 (20%), Positives = 182/448 (40%), Gaps = 19/448 (4%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L             L+  Q     S     I      +    +  + +  E
Sbjct: 81  EESRQRLSRLVAKLEEMRQRDQELNE-QLQGNISQLNQEISDRIKAEEARLLMVSKLREE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
                  + ++E +   L S L+A+ D +   N        NRA+  L G   + ++   
Sbjct: 140 MARREQAQVELEQQSALLRSFLDASPDLVYYRNENKEFSGCNRAMELLLGKSQKQLIGLT 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII--KKLPFSSCY 554
                  +    +     ++   ++  T E+  +     +    LR +    ++      
Sbjct: 200 PKDVYPPDIAEKVMETDEKVFRHNVSLTYEQWLVYPDGRKACFELRKVPFYDRMGKRHGL 259

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+ ++ L +        S  K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 260 MGFGRDITERKRYQDALEN-------ASREKTTFISTISHELRTPLNGIVGLSRILLDTH 312

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                +    +Y   I  S   + +I ND++++ K E  K+ L  +PV     V +  +L
Sbjct: 313 L----DAEQQKYLKTIHVSAITLGNIFNDIIEMDKQERRKVQLDNQPVDFVGFVVDLENL 368

Query: 675 VQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
             L A  K + +       +P  I+ D   ++QI  N+LSNA+ FT  G ++++   H  
Sbjct: 369 GGLLAQPKGLQLEMELHQPLPKTIITDGTRLRQILWNLLSNAVKFTREG-RVVVRVWHEQ 427

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMGKF 792
              +   V D+G+G+   ELEK    + Q+ +    +   GTG+GL ++K +  +  G  
Sbjct: 428 GNRLRFEVEDSGMGIPADELEKIFSMYYQVKDQHGGKPATGTGIGLAVSKRLAQSMGGDI 487

Query: 793 YIFSTPAKGTLIEIIF--PLYDTSHPHD 818
           ++ S   KG+   +    P+ ++  P D
Sbjct: 488 HVTSELGKGSCFTLTVTAPVGESDEPGD 515



 Score = 41.2 bits (95), Expect = 0.77,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 37/124 (29%), Gaps = 5/124 (4%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN-TWYGKTTLWPIE 153
               +  +   +G    ++IG+   DV      +      + + R N +   +  L   +
Sbjct: 177 FSGCNRAMELLLGKSQKQLIGLTPKDVYPPDIAEKVMETDEKVFRHNVSLTYEQWLVYPD 236

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
           G       +L  +P Y R  +  G  GFG           +   +   ++ +        
Sbjct: 237 GRKACF--ELRKVPFYDRMGKRHGLMGFG--RDITERKRYQDALENASREKTTFISTISH 292

Query: 214 HSSV 217
               
Sbjct: 293 ELRT 296


>gi|91772450|ref|YP_565142.1| PAS sensor signal transduction histidine kinase [Methanococcoides
           burtonii DSM 6242]
 gi|91711465|gb|ABE51392.1| Signal transduction histidine kinase [Methanococcoides burtonii DSM
           6242]
          Length = 436

 Score =  321 bits (822), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 100/398 (25%), Positives = 184/398 (46%), Gaps = 16/398 (4%)

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
               + Q  +E ++ + + ++ ++  +     ++      G  +++    I+  N   SK
Sbjct: 39  EELRIHQIELEIQNEELKTSQIELLAQKEAYFTLFNKIPVGYVLLDVNASIIRMNETFSK 98

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK-----------ITLGS 532
           +    ++ +L K  + F+      +              + +E               G 
Sbjct: 99  MIFKEIDKVLFKGLSDFIYDLDKQIFLSRYRAFFENPTNKKMEIRFNKNVGLIYCELTGR 158

Query: 533 TKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
            ++   ++L   +              DIS+ K  +  L  +K I E  S  KS+F+  V
Sbjct: 159 IED--SVALTSSLNLNSSKLLLLAI-TDISDRKMAEISLLKSKDILENASRIKSNFIGNV 215

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHE+RTPL +IIGFS  I  +          ++Y + ++ SG  +L ++ND+LDISKIES
Sbjct: 216 SHELRTPLNSIIGFS-HILKENNENNLTENQLKYCSNVEISGKHLLALINDVLDISKIES 274

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712
           G+     E   L+  + E +  +  +AN+K I +  +  +    + AD   +KQI LN+L
Sbjct: 275 GEARFEPELFKLNLLIHEVVESLAPFANKKSIELEMTLKHKNIGVHADRTKIKQILLNLL 334

Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           +N+I FTP+ G+I+++      E + + + D G+G+  Y  ++  +PF Q       + E
Sbjct: 335 NNSIKFTPACGKIMLTVGV-DEENINISISDNGIGIAKYNYDRIFEPFNQADMLLTKQYE 393

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           GTGLGL +AK  V+ + G+ ++ S    GT   I  P+
Sbjct: 394 GTGLGLSIAKKYVEMHKGQIWVKSELGVGTTFNIKIPI 431


>gi|312795985|ref|YP_004028907.1| sensory transduction protein kinase [Burkholderia rhizoxinica HKI
           454]
 gi|312167760|emb|CBW74763.1| Sensory transduction protein kinase (EC 2.7.3.-) [Burkholderia
           rhizoxinica HKI 454]
          Length = 648

 Score =  321 bits (822), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 94/492 (19%), Positives = 194/492 (39%), Gaps = 25/492 (5%)

Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
           F +   G++   N     +  Y++ + I      S       ++D      +        
Sbjct: 33  FMLDPEGHVASWNTGAQYIKGYRAEEIIGR--HFSVFYSPADIADGKPEYELRHAAEFGR 90

Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
                     ++ +     A   +         E      I  +  + R  + K+     
Sbjct: 91  ---VEDEGWRVRRDGSRFWA-NVVITALRAPSGELYGFAKITRDLTERRAEEDKLRQSEE 146

Query: 453 QLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
           +   ++E+  D  I +++ +G + S N    ++ GY  E+I+ +  +VF   +  +    
Sbjct: 147 RFRLMVESVKDYAICMLDPQGRVASWNAGAMQINGYRSEEIIGRHMSVFYRDDDNTDGMP 206

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQE 567
              ++ +    + +E       K+  L    ++I  +  ++     +++   D++E K+ 
Sbjct: 207 E-QQLQAAANTERVEDNAWRVRKDGTLFWANVVITAVRDAAGALLGFTMVTRDMTERKRL 265

Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
           +          E  S   S+FLA ++HE+R PL  +     V++     P  +       
Sbjct: 266 EE--------LELSSRRMSEFLAMLAHELRNPLAPVRNAVSVMQ---LVPNVDATMRHCR 314

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
           + IDR  + +  +V+DLLDI +I +GK+ L    + + E V+ ++   + + +E+   + 
Sbjct: 315 DVIDRQVSHLTRLVDDLLDIGRITTGKLELRLACIDMAEVVARSVEAARPFIDERWQSLH 374

Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747
                    +  D+  + Q   N+L NA  F+PSG +I I  T      + LRV D G G
Sbjct: 375 VQLPPQPAWVRGDMTRLVQAVQNLLDNASKFSPSGARISIEVTV-GKRMIFLRVIDQGRG 433

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEI 806
           ++   L+     F Q  ++Q     G G+GL L +++++ + G     S     G+   I
Sbjct: 434 ISQEGLKSIFNLFVQENHAQNPTDTGLGIGLTLCRSLIELHGGMIDASSDGLGSGSTFTI 493

Query: 807 IFPLYDTSHPHD 818
             P+       D
Sbjct: 494 RLPIARHQAQAD 505



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 24/252 (9%), Positives = 73/252 (28%), Gaps = 8/252 (3%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + +D  G++   +       G  A ++IG           I       +L         
Sbjct: 32  IFMLDPEGHVASWNTGAQYIKGYRAEEIIGRHFSVFYSPADIADGKPEYELRHAAEFGRV 91

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +   W +         ++    + + + E  GF    I              ++ +++F 
Sbjct: 92  EDEGWRVRRDGSRFWANVVITALRAPSGELYGFAK--ITRDLTERRAEEDKLRQSEERFR 149

Query: 206 HLHEIKKGHSSV-EKEKYDIFSQQSPPPHL---RMKNKVSS-LTEYYAHKDDVLKTEKYP 260
            + E  K ++      +  + S  +    +   R +  +   ++ +Y   D+     +  
Sbjct: 150 LMVESVKDYAICMLDPQGRVASWNAGAMQINGYRSEEIIGRHMSVFYRDDDNTDGMPEQQ 209

Query: 261 LLTSEESSLPEQEDFH-TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
           L  +  +   E   +    +   +        +++ +     +       +     +E E
Sbjct: 210 LQAAANTERVEDNAWRVRKDGTLFWANVVITAVRDAAGALLGFTMVTRDMTERKRLEELE 269

Query: 320 NLTPETVDKCPI 331
             +    +   +
Sbjct: 270 LSSRRMSEFLAM 281



 Score = 70.4 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 53/141 (37%), Gaps = 6/141 (4%)

Query: 454 LCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
              +++   D  I +++ EG + S N     + GY  E+I+ + F+VF      +     
Sbjct: 20  FELMVQNIKDYAIFMLDPEGHVASWNTGAQYIKGYRAEEIIGRHFSVFYSPADIADGKPE 79

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEK 568
              +        +E       ++       ++I  L   S     ++    D++E + E+
Sbjct: 80  YE-LRHAAEFGRVEDEGWRVRRDGSRFWANVVITALRAPSGELYGFAKITRDLTERRAEE 138

Query: 569 NKLSHAKKIAEKESSHKSDFL 589
           +KL  +++          D+ 
Sbjct: 139 DKLRQSEERFRLMVESVKDYA 159



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 26/246 (10%), Positives = 56/246 (22%), Gaps = 14/246 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL-KRQNTWYGKT 147
           +D  G +   +    +  G  + ++IG  +  V      + +      L    NT   + 
Sbjct: 163 LDPQGRVASWNAGAMQINGYRSEEIIGRHMS-VFYRDDDNTDGMPEQQLQAAANTERVED 221

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
             W +         ++    +        GF    +            L     +    L
Sbjct: 222 NAWRVRKDGTLFWANVVITAVRDAAGALLGFT--MVTRDMTERKRLEELELSSRRMSEFL 279

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
             +                       + +   V ++     H  DV+  +   L    + 
Sbjct: 280 A-MLAHELRNPLAPVRNA--------VSVMQLVPNVDATMRHCRDVIDRQVSHLTRLVDD 330

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
            L +     T  L           +   S E+          SL              + 
Sbjct: 331 LL-DIGRITTGKLELRLACIDMAEVVARSVEAARPFIDERWQSLHVQLPPQPAWVRGDMT 389

Query: 328 KCPIPF 333
           +     
Sbjct: 390 RLVQAV 395


>gi|110639274|ref|YP_679483.1| PAS/PAC sensor hybrid histidine kinase [Cytophaga hutchinsonii ATCC
            33406]
 gi|110281955|gb|ABG60141.1| PAS/PAC sensor hybrid histidine kinase [Cytophaga hutchinsonii ATCC
            33406]
          Length = 1324

 Score =  321 bits (822), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 129/745 (17%), Positives = 257/745 (34%), Gaps = 37/745 (4%)

Query: 85   FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL-HIDPNNHIGDLLKRQNTW 143
            F   ID  G    I+E           +   + + ++     +        D  K++  +
Sbjct: 314  FIQVIDKEGNFVFINESSANRFQRTIEEFETLNIKNIVPSFYNNMTWEEQFDFFKQKQNF 373

Query: 144  YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
              ++T    + T+  +   +    ++ +    S                     +   + 
Sbjct: 374  LLESTHTKPDKTSYPIESSVKYTTVHEKEYIIS------FSKDISERKRTEQALQDQKQF 427

Query: 204  FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH-----KDDVLKTEK 258
            +  +        +V    Y                K         +     KDD L   +
Sbjct: 428  YEDILNNIPSDIAVFNTNYQYLYVNPAAIKDEETRKWIIGKTDLDYCRYRGKDDSLAIMR 487

Query: 259  YPLLTSEES---SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
                         +  ++ F   + N     + F  + + +      + +  + +     
Sbjct: 488  RKNHDILHEFKKPIEWEDVFTDKDGNVSYVLRKFHPVLDENDNIKIIIGNGINITEIKQV 547

Query: 316  DEGENLTPET----VDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
             E    + E     +       + +       Y +  +  +  Y               +
Sbjct: 548  QEKLAKSEELYRLVIHAANDGIWDWDIASGSLYLSERWKSMLGYTDETLANHISSWEKTM 607

Query: 371  DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
                LS    I      +        +  L  +  +  +   +    F   N+  E    
Sbjct: 608  HPDDLSIAKEILQNHFEKRK----PYNYTLRYLHVDG-SIRWIMCRGFAIRNRKGEPYRM 662

Query: 431  NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLFGYP- 488
             G   +  DT+I + K++    +L +I   + D   +++     I+  N+   +LF    
Sbjct: 663  VGSCTDVTDTQIAEEKLKENEEKLQAIFNHSHDAKFLVDPCTNKIIEFNKRTLELFETDK 722

Query: 489  VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
             + +   P T   +                       E + +   K E   ++      +
Sbjct: 723  PDTLYTIPLTSLRKYPLTDAELADTQNQFKQLGYWNQEVLYITQKKNEFWGNIVAKTIFI 782

Query: 549  PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                   + + DISE K+ + +L  AK+IAE+ +  K  FLA +SHEIRTP+  I+G +E
Sbjct: 783  NKKEVILVRITDISENKKIEQELIKAKQIAEESTKAKEMFLANMSHEIRTPMNGILGMAE 842

Query: 609  VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
            +I         +    ++   I  S + +L I+ND+LDI+KIESGK+ +   P  + E +
Sbjct: 843  LISRTSL----DVTQKKHVQLIKNSADNLLIIINDILDIAKIESGKLTIEQIPFDICEVI 898

Query: 669  SEAISLVQLYANEKRILIRTS-FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727
              AI  +   A EK I +       +   ++ D   + Q  LN+++NAI FT +G  + I
Sbjct: 899  KSAIQTLTYKAEEKGIDLIIHPIKLDHRVVIGDPFRLTQALLNLINNAIKFTENGS-VEI 957

Query: 728  STTH----TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
            S       +++      V+DTG+G+   +L+   + F Q       +  GTGLGL ++K 
Sbjct: 958  SGRIPHSSSTDITFEFTVKDTGIGIPQEKLDSIFEGFTQASPDTSRKYGGTGLGLTISKN 1017

Query: 784  MVDANMGKFYIFSTPAKGTLIEIIF 808
            ++    G  ++ S   KG+      
Sbjct: 1018 LIQMQGGNIWVESVVGKGSKFIFSI 1042



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/143 (14%), Positives = 46/143 (32%), Gaps = 4/143 (2%)

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
             +   T+    + E ++  L  +L    + I +I++EG  +  N + +  F   +E+  
Sbjct: 288 ATDITSTK----ESEEKIYLLKELLNQLDEFIQVIDKEGNFVFINESSANRFQRTIEEFE 343

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553
                  +     ++      +         LE       K    +   +    +     
Sbjct: 344 TLNIKNIVPSFYNNMTWEEQFDFFKQKQNFLLESTHTKPDKTSYPIESSVKYTTVHEKEY 403

Query: 554 YSLTMHDISEWKQEKNKLSHAKK 576
                 DISE K+ +  L   K+
Sbjct: 404 IISFSKDISERKRTEQALQDQKQ 426


>gi|39933159|ref|NP_945435.1| sensor histidine kinase [Rhodopseudomonas palustris CGA009]
 gi|39652784|emb|CAE25523.1| sensor histidine kinase with multiple PAS domains [Rhodopseudomonas
           palustris CGA009]
          Length = 848

 Score =  321 bits (822), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 135/710 (19%), Positives = 251/710 (35%), Gaps = 43/710 (6%)

Query: 121 VSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN----REFS 176
           +     +  ++ +  LL +   +  +        T+    I+     +  +     RE S
Sbjct: 166 LPPEPALQMDHAVDALLDKGEGFLLQLV------TSNGRSIEAMGRAVGGQAVVRIRELS 219

Query: 177 GFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM 236
           G R        R   D     K L ++   L             +    +          
Sbjct: 220 GVR--------RELADMTRRFKALQEETEMLRGFATAAPWPIWTRRSDGTLSFANAAYAR 271

Query: 237 KNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS 296
               S   +      ++L +     L        E      I +    +      L+ + 
Sbjct: 272 ATDASDAADAIGRNLELLDSGDRAALARALGDGYEYSGRLPIVVGGERRYYDVRALKVSG 331

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYK 355
             +   +      +L A  +   +    T+D+      V+     L + N S+  L    
Sbjct: 332 GSAGIAVDATETAALGAALERMADAHRRTLDQLSSGVAVFDAQRRLSFYNDSYRKLWD-- 389

Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA---RLHTIQWNRENSLA 412
                     L  +       D+  +  +   R         A   +LH      E    
Sbjct: 390 ----------LDRIFLDSHPDDSTVLDRLRAERKLPEERDFKAWKNKLHEAYRAVEAEKD 439

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL----CSILEATSDGIAII 468
           + ++P  +A          G      D       ++     L       L+  S+ +A+ 
Sbjct: 440 VWYLPDGRAVSIVTTPNPEGGVTYLFDDVTESLDLKRRYGGLIDVQRETLDNLSEAVAVF 499

Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH-YLTEILSLDLRQTLEK 527
              G     N   ++++    E +  +P    +E+    + +     + L   +    ++
Sbjct: 500 GSNGCAQLFNPPFARMWNLSAEALQSQPHIEAIEEWCRPLFDDDVFWQALRGAITGIDDR 559

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
             +    E K  S+              LT  DI++ +  +  L    +  E     K D
Sbjct: 560 RHVLLKIERKDGSVLACKTMPLPDGATMLTFQDITDTENVERALRERNEALETADRIKID 619

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           F+  VS+E+R+PLT IIGF+  + +   GPL   +  EY NYI  S N ++ I+N++LD+
Sbjct: 620 FVHHVSYELRSPLTTIIGFAHFLSDSSTGPLT-EKQAEYVNYITTSTNALMAIINNILDL 678

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707
           + I++G M L+  P+ + +A+  A   +Q      +I ++      I   + D R V Q+
Sbjct: 679 ASIDAGAMTLNLGPIDIRKAIDAAAEGIQDRLARDQIALQIDVDPAIESFVGDERRVVQV 738

Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
             N+L+NAI F+PS G + ++        V   V D+G G+     EK    F    + Q
Sbjct: 739 LYNLLANAIDFSPSQGTVRLTVR-RGETRVAFTVTDSGPGIAPAFKEKMFDLFE--SDPQ 795

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
             R  G GLGL L ++ V+ + GK  + S   +GT +   FP+   +  H
Sbjct: 796 GSRHRGAGLGLSLVRSFVELHGGKVLVESAVGRGTSVTCEFPIEPAAQRH 845



 Score = 61.2 bits (147), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 48/385 (12%), Positives = 101/385 (26%), Gaps = 39/385 (10%)

Query: 86  TWNIDAHGYLKEISEEL-PKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144
            W   + G L   +      T  + A   IG  L ++ D         +   L     + 
Sbjct: 253 IWTRRSDGTLSFANAAYARATDASDAADAIGRNL-ELLDSGD---RAALARALGDGYEYS 308

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
           G     PI         D+ AL +        G  G  +           A  +R+    
Sbjct: 309 G---RLPIVVGGERRYYDVRALKVSG------GSAGIAV--DATETAALGAALERMADAH 357

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
               +      +V   +  +          ++ +      + +     VL   +      
Sbjct: 358 RRTLDQLSSGVAVFDAQRRLSFYNDSY--RKLWDLDRIFLDSHPDDSTVLDRLRAERKLP 415

Query: 265 EESSLPE-----QEDFHTINLNQYTKKQ-------YFGTLQNNSKESFEYLSHRNHPSLS 312
           EE           E +  +   +               T       ++ +        L 
Sbjct: 416 EERDFKAWKNKLHEAYRAVEAEKDVWYLPDGRAVSIVTTPNPEGGVTYLFDDVTESLDLK 475

Query: 313 AYFDEGENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
             +    ++  ET+D       V+ S+G     NP F  +    S + ++    +  + +
Sbjct: 476 RRYGGLIDVQRETLDNLSEAVAVFGSNGCAQLFNPPFARMWNL-SAEALQSQPHIEAIEE 534

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
             +   ++ +    L  +          L  I+    + LA   +P              
Sbjct: 535 WCRPLFDDDVFWQALRGAITGIDDRRHVLLKIERKDGSVLACKTMPLPDGA-------TM 587

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCS 456
               +  DT   +R +      L +
Sbjct: 588 LTFQDITDTENVERALRERNEALET 612



 Score = 41.9 bits (97), Expect = 0.39,   Method: Composition-based stats.
 Identities = 36/351 (10%), Positives = 77/351 (21%), Gaps = 25/351 (7%)

Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
            +  T      +   ++        +  L    + +    +   +   F  +S       
Sbjct: 32  GLAGTAVMVASSPARAADDHLAAITSSLLLDLNRHEMMTLIIALAALGFSVMSAIMLVRT 91

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
                  E      +              L +A P  L+              G + L  
Sbjct: 92  RQRAVAREAGLRADLQGLQA--ESDRFQALLFAEPQVLISWAAGDSR--PQVSGDTALFL 147

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASAR--LHTIQWNRENSLAMTFI----------PFE 419
             +       + +          A      +  +    E  L                  
Sbjct: 148 PLETQSRQPQRVLAFGTWLPPEPALQMDHAVDALLDKGEGFLLQLVTSNGRSIEAMGRAV 207

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
                      +G+  E  D     + ++ E   L     A    I     +G +   N 
Sbjct: 208 GGQAVVRIRELSGVRRELADMTRRFKALQEETEMLRGFATAAPWPIWTRRSDGTLSFANA 267

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
           A ++                 L+    + +   L      D  +   ++ +    E +  
Sbjct: 268 AYARATDASDAADAIGRNLELLDSGDRAALARAL-----GDGYEYSGRLPIVVGGERRYY 322

Query: 540 SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
            +R     L  S   +    D +E       L        +     S  +A
Sbjct: 323 DVRA----LKVSGGSAGIAVDATETAALGAALERMADAHRRTLDQLSSGVA 369


>gi|311279881|ref|YP_003942112.1| multi-sensor hybrid histidine kinase [Enterobacter cloacae SCF1]
 gi|308749076|gb|ADO48828.1| multi-sensor hybrid histidine kinase [Enterobacter cloacae SCF1]
          Length = 900

 Score =  321 bits (822), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 88/505 (17%), Positives = 180/505 (35%), Gaps = 23/505 (4%)

Query: 321 LTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
                ++   +   +Y    NL Y N   +      +            L  +  ++   
Sbjct: 6   QLHAALNAPNVALAIYDEQENLQYWNQRLIEYYPALADWLHRGVQLTDVLRMSLDIAYPA 65

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
                                   + N      +T        Q            +   
Sbjct: 66  IHAESKKRMMASMLANYR------RNNHYEVRRVTKRTLYIQYQRTPEGGIISTHTDISR 119

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED--ILRKPF 497
                +  +          E +  GI         L  N A+  L G   E   +    +
Sbjct: 120 YADVIKNEQHLHSDFILAAETSHIGIWDWEYHSDELQVNEALLLLLGIQREQNILTSDLW 179

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR-----IIIKKLPFSS 552
           T     +  +  +  +    +  +             +E    +      + +     + 
Sbjct: 180 TQAFHPDDLAHFHQSIHHA-TRAVLPIFTCEMRVLRADETYGWMLIQGQIMTLSLQGSAQ 238

Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
               T+ DI+E K  +     A + A+  +  KS+FLA +SHEIRTP+  I+G +++   
Sbjct: 239 KVIGTLQDITEQKNAEAASRQAVEAAKAANQAKSEFLANMSHEIRTPMNGILGMTQLCLE 298

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
                       +Y N    S + +L+I+N++LD SKIE+GK+ L+ E  ++   + E  
Sbjct: 299 TDLTA----DQRDYINMAHSSASALLNIINEILDFSKIEAGKLTLNAEDFAIRPLIQEIT 354

Query: 673 SLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
             +    +EK I +      ++   I  D   ++Q+  N++ NA+ FT  G ++++    
Sbjct: 355 RPLMPKFSEKNIELLVDIHPDVAIEIHGDPLRLRQVLTNLIGNALKFTLHG-EVVLRILP 413

Query: 732 TSNE--EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
             +    ++  + D+G+G+   + +   + F Q  NS   +  GTGLGL ++  +V+   
Sbjct: 414 VPDALHRLLFSLHDSGIGIPEDKQKVIFESFSQADNSTTRKYGGTGLGLTISSRLVEKMG 473

Query: 790 GKFYIFSTPAKGTLIEIIFPLYDTS 814
           G+ ++ S   +G+      P+   +
Sbjct: 474 GELHLTSQVGQGSCFSFSLPVLPGA 498



 Score = 37.3 bits (85), Expect = 9.6,   Method: Composition-based stats.
 Identities = 19/123 (15%), Positives = 38/123 (30%), Gaps = 15/123 (12%)

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF---------GYPVEDILRKPFTVF 500
              QL + L A +  +AI + +  +   N+ + + +         G  + D+LR    + 
Sbjct: 3   SHEQLHAALNAPNVALAIYDEQENLQYWNQRLIEYYPALADWLHRGVQLTDVLRMSLDIA 62

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
                       +  +L+   R+         TK    +  +              T  D
Sbjct: 63  YPAIHAESKKRMMASMLAN-YRRNNHYEVRRVTKRTLYIQYQRTP-----EGGIISTHTD 116

Query: 561 ISE 563
           IS 
Sbjct: 117 ISR 119


>gi|297580999|ref|ZP_06942924.1| sensor histidine kinase FexB [Vibrio cholerae RC385]
 gi|297534825|gb|EFH73661.1| sensor histidine kinase FexB [Vibrio cholerae RC385]
          Length = 785

 Score =  321 bits (822), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 87/387 (22%), Positives = 165/387 (42%), Gaps = 19/387 (4%)

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
            +E E       + ++      L S ++A+ D I   N +G     NRA+ +L G    +
Sbjct: 135 DLENEVYQREKTQVELAERTALLRSFIDASPDLIYYRNAKGEFSGCNRAMEELTGKRESE 194

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
           ++         +     +     ++ + +   T E+        +    LR +       
Sbjct: 195 LVGLTPWDVYRKEIAQSIVETDQQVFNNNTAITYEQWLEYPDGRKSFFELRKVPFYNKDG 254

Query: 552 S--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                     DI+E K+ +  L       EK S  K+ F++ +SHE+RTPL  I+G S +
Sbjct: 255 RHLGLVGFGRDITERKRHEESL-------EKASRDKTTFISTISHELRTPLNGIVGLSRM 307

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           + +            ++   I+ S   + +I ND++D+ K +  K+ L    ++ +E V+
Sbjct: 308 LLDTPLSS----EQRKHLQTINVSAVTLGNIFNDIIDMDKFDRRKLELFPAALNFEEFVA 363

Query: 670 EAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI-II 727
           E   L  L A +K +        ++P  +  D   ++Q+  N+LSNA+ FT  GG +  +
Sbjct: 364 EIEVLAALMAEQKGLRFDLERLTDLPSLVEVDSTRLRQVLWNLLSNAMKFTKEGGVVMTV 423

Query: 728 STTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGEGTGLGLPLAKAMV 785
           S    +   E+ + V DTG+G+   E EK    + Q+ + +      GTG+GL +++ ++
Sbjct: 424 SAECDAQHAEITIEVEDTGIGIPEAEQEKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLI 483

Query: 786 DANMGKFYIFSTPAKGTLIEIIF--PL 810
               G   + S    G+   +    PL
Sbjct: 484 KLMGGDISVNSEEGFGSTFSVTIRVPL 510



 Score = 45.4 bits (106), Expect = 0.045,   Method: Composition-based stats.
 Identities = 33/240 (13%), Positives = 60/240 (25%), Gaps = 18/240 (7%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           +A G     +  + +  G    +++G+   DV               +   NT       
Sbjct: 172 NAKGEFSGCNRAMEELTGKRESELVGLTPWDVYRKEIAQSIVETDQQVFNNNTAITYE-Q 230

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
           W           +L  +P Y+++    G  GFG               ++  +  +    
Sbjct: 231 WLEYPDGRKSFFELRKVPFYNKDGRHLGLVGFG--RDITERKRHEESLEKASRDKTTFIS 288

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY--------------AHKDDVLK 255
                           S+      L  + +    T                   K D  K
Sbjct: 289 TISHELRTPLNGIVGLSRMLLDTPLSSEQRKHLQTINVSAVTLGNIFNDIIDMDKFDRRK 348

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
            E +P   + E  + E E    +   Q   +     L +      E  S R    L    
Sbjct: 349 LELFPAALNFEEFVAEIEVLAALMAEQKGLRFDLERLTDL-PSLVEVDSTRLRQVLWNLL 407


>gi|118579770|ref|YP_901020.1| multi-sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
 gi|118502480|gb|ABK98962.1| multi-sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
          Length = 944

 Score =  321 bits (822), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 102/518 (19%), Positives = 189/518 (36%), Gaps = 25/518 (4%)

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGG 365
               L A   E E           I F+ Y   G+  + + + L     ++ +    +  
Sbjct: 73  RKSKLQAKLREKELRLDLVRKTFQIGFWEYEPGGDGEHGDDAMLRFLGKQADE----SAS 128

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
           L     A  L ++       L  +           +  + +      +      +  +  
Sbjct: 129 LYESWRASVLPEDLVEVEGGLRAALNEKTPFDTT-YRFRRDDGQLRVIRAHGRLRKREEG 187

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
                 G+  +  +   ++  M      L  +       +     E      N      F
Sbjct: 188 RPPCLIGVSKDITELVQSEHAMRDNERFLKILANVIPGMVGYWTYEQYCAFANDEYQLWF 247

Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
           G   E++L       L       +  ++   L   + Q  +     S  +     +  I 
Sbjct: 248 GRSPEEMLGMHIRELLGTELYQDIEPFIHGALE-GVPQHFQHALTRSDGQHCHTMIHYIP 306

Query: 546 KKLPFS-SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH-------KSDFLARVSHEIR 597
                    +   + DI+E KQ + +L       ++ +         KS FLA +SHEIR
Sbjct: 307 DMEGEQVRGFYELVSDITELKQTQFRLEELNTALQQRTEEAEAANAAKSRFLANMSHEIR 366

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TP+ A++G   +++     P    R  +Y   +  +   +L I+ND+LD SKIE+ KM L
Sbjct: 367 TPMNAVLGLLHLLQRTELSP----RQHDYIEKVQMASRSLLGILNDILDFSKIEADKMEL 422

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAI 716
              P    E ++     +      K++ +      ++P  +L D   ++Q+ LN+  NA+
Sbjct: 423 ETVPFFPQELLNNLAVFLSPSLQNKKVELLFDVDADLPPTLLGDALRLQQVLLNLTGNAV 482

Query: 717 HFTPSGGQIIISTTHT----SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
            FT  G +I+++            V   V+DTG+G+   +LE     F Q  +S   R  
Sbjct: 483 KFTEQG-RIVVTIQVVSLTPDQARVRFSVKDTGIGIPADKLESVFTGFVQAESSTTRRFG 541

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           G+GLGL +++ +V    G+  + ST  KG+       L
Sbjct: 542 GSGLGLTISRRLVRLMGGELEVESTLGKGSTFHFTITL 579


>gi|329962495|ref|ZP_08300495.1| PAS domain S-box protein [Bacteroides fluxus YIT 12057]
 gi|328530051|gb|EGF56939.1| PAS domain S-box protein [Bacteroides fluxus YIT 12057]
          Length = 939

 Score =  321 bits (822), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 94/521 (18%), Positives = 194/521 (37%), Gaps = 30/521 (5%)

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIE 361
           L   +        D  E L        P    +Y   G L   N   + +   K   DI 
Sbjct: 435 LDTTDTIQAHQALDHSEKLFRSIFANIPAGVEIYDQEGCLVDVNNKDMEIFGIKDKADII 494

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSD-RTCIAASARLHTIQWNRENSLAMTFIPFEK 420
                  L   P  S     +       D R   +          ++   + +     + 
Sbjct: 495 GIN----LFSNPNFSAAFIEQIKTKDEVDFRLDYSFETIRGYYPTDKTEVINLYTKISKV 550

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA---IINREGI-ILS 476
            +          I  ++ +      ++         I +    G A   +++R+G  I  
Sbjct: 551 YDSKGVFTGYVMINIDNTERIDTLSRICDFENFFLLISDYAKVGYAKLNLLDRKGYAIKQ 610

Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
             + + +    P+ D++       +     + M  +  +       +          ++E
Sbjct: 611 WYKNMGEDENAPLTDVVG--VYERMHPEDRTRMLDFFQKAC-TGEAKDFRGELRVLREDE 667

Query: 537 K----LLSLRIIIKKLPFSSC---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
           K     +   +++ +    +         +DI+E K+ +  L  AK+ AE     KS FL
Sbjct: 668 KNKWNWIRTNVVVNQYQPENGQIELIGVNYDITELKETEAMLIEAKEKAEAADRLKSAFL 727

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
           A +SHEIRTPL AI+GFS ++              +Y   ++ + +L+L +++D+LD+SK
Sbjct: 728 ANMSHEIRTPLNAIVGFSSLLGETE----NVEERKQYIAIVEENNDLLLQLISDILDLSK 783

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709
           IE+G  +     + ++    + +  +++      + +         +I++D   + Q+  
Sbjct: 784 IEAGTFDFTKRALDVNLLCEDIVRTMRMKVKP-GVELLFDSHLPECQIVSDRNRLNQVLA 842

Query: 710 NILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
           N ++NA+ FT +G  I +         +   V DTG+G+   +  +    F ++      
Sbjct: 843 NFVNNAVKFTSAGS-IRVGYEPLDENRLRFYVADTGIGIEPEKQVQVFDRFVKLDTF--- 898

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
              GTGLGL ++K++++   G   + S   +G+      P+
Sbjct: 899 -VPGTGLGLSISKSIIEQLGGTIGVDSKVGEGSCFWFTLPI 938



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/290 (14%), Positives = 95/290 (32%), Gaps = 41/290 (14%)

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-P 488
              +  +  DT    + ++       SI      G+ I ++EG ++  N    ++FG   
Sbjct: 430 VVALFLDTTDTIQAHQALDHSEKLFRSIFANIPAGVEIYDQEGCLVDVNNKDMEIFGIKD 489

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL---GSTKEEKLLSLRIII 545
             DI+      F   N  +     +     +D R      T+     T + ++++L   I
Sbjct: 490 KADIIGINL--FSNPNFSAAFIEQIKTKDEVDFRLDYSFETIRGYYPTDKTEVINLYTKI 547

Query: 546 KKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESS------HKSDFLA----- 590
            K+  S      Y +   D +E     +++   +      S        K + L      
Sbjct: 548 SKVYDSKGVFTGYVMINIDNTERIDTLSRICDFENFFLLISDYAKVGYAKLNLLDRKGYA 607

Query: 591 ------RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND- 643
                  +  +   PLT ++G  E +  +    + +                +  +  D 
Sbjct: 608 IKQWYKNMGEDENAPLTDVVGVYERMHPEDRTRMLDFFQKACTGEAKDFRGELRVLREDE 667

Query: 644 -----------LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                      +++  + E+G++ L      + E   E  +++ + A EK
Sbjct: 668 KNKWNWIRTNVVVNQYQPENGQIELIGVNYDITEL-KETEAML-IEAKEK 715


>gi|298500269|ref|ZP_07010074.1| sensor histidine kinase FexB [Vibrio cholerae MAK 757]
 gi|297540962|gb|EFH77016.1| sensor histidine kinase FexB [Vibrio cholerae MAK 757]
          Length = 785

 Score =  321 bits (822), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 88/387 (22%), Positives = 166/387 (42%), Gaps = 19/387 (4%)

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
            +E E      N+ ++      L S ++A+ D I   N +G     NRA+ +L G    +
Sbjct: 135 DLENEVYQREKNQVELAERTALLRSFIDASPDLIYYRNAKGEFSGCNRAMEELTGKRGSE 194

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
           ++         +     +     ++ + +   T E+        +    LR +       
Sbjct: 195 LVGLTPWDVYRKEIAQSIVETDQQVFNNNTAITYEQWLEYPDGRKSFFELRKVPFYNKDG 254

Query: 552 S--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                     DI+E K+ +  L       EK S  K+ F++ +SHE+RTPL  I+G S +
Sbjct: 255 RHLGLIGFGRDITERKRHEESL-------EKASRDKTTFISTISHELRTPLNGIVGLSRM 307

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           + +            ++   I+ S   + +I ND++D+ K +  K+ L    ++ +E V+
Sbjct: 308 LLDTPLSG----EQRKHLQTINVSAVTLGNIFNDIIDMDKFDRRKLELFPAALNFEEFVA 363

Query: 670 EAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI-II 727
           E   L  L A +K +        ++P  +  D   ++Q+  N+LSNA+ FT  GG +  +
Sbjct: 364 EIEVLAALMAEQKGLRFDLERLTDLPSLVEVDSTRLRQVLWNLLSNAMKFTKEGGVVMTV 423

Query: 728 STTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGEGTGLGLPLAKAMV 785
           S    +   E+ + V DTG+G+   E EK    + Q+ + +      GTG+GL +++ ++
Sbjct: 424 SAECDAQHAEITIEVEDTGIGIPEAEQEKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLI 483

Query: 786 DANMGKFYIFSTPAKGTLIEIIF--PL 810
               G   + S    G+   +    PL
Sbjct: 484 KLMGGDISVNSEEGFGSTFTVTIRVPL 510



 Score = 43.9 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 16/128 (12%), Positives = 34/128 (26%), Gaps = 3/128 (2%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           +A G     +  + +  G    +++G+   DV               +   NT       
Sbjct: 172 NAKGEFSGCNRAMEELTGKRGSELVGLTPWDVYRKEIAQSIVETDQQVFNNNTAITYE-Q 230

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
           W           +L  +P Y+++    G  GFG               ++  +  +    
Sbjct: 231 WLEYPDGRKSFFELRKVPFYNKDGRHLGLIGFG--RDITERKRHEESLEKASRDKTTFIS 288

Query: 210 IKKGHSSV 217
                   
Sbjct: 289 TISHELRT 296


>gi|260171812|ref|ZP_05758224.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
          Length = 926

 Score =  321 bits (822), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 97/519 (18%), Positives = 194/519 (37%), Gaps = 29/519 (5%)

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIE 361
           L        +   D  E L        P    +Y   G L   N   L +    +  D+ 
Sbjct: 413 LDSTGSVQANRALDRSEKLFKNIFANIPAGVEIYDKDGYLMDLNNKDLEIFGVVNKSDVI 472

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                        + D    + ++ +R +    +        + +R N + +     +  
Sbjct: 473 GINFFENPNVPQSIRDRVRNEDLVDFRLN---YSFEQIGGYYKTSRSNVIELYSKVSKLY 529

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA---IINREGI-ILST 477
           +          I  ++ +      ++         I +    G A   ++NR+G  I   
Sbjct: 530 DNEGNFSGYILISIDNTERIDAMNRIRDFENFFLMISDYAKVGYAKLNLLNRKGYAIKQW 589

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
            + + +    P+ +++       +          +  E+     R   +          K
Sbjct: 590 YKNLGEEEDIPLSEVVG--VYGKMHPEDRKRFFDFYDEVKKGKRRH-FQGEVRIRRPGTK 646

Query: 538 --LLSLRIIIK-----KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
                +   +                  +DI+E K+ + +L  A+  AE     KS FLA
Sbjct: 647 NEWNWVNSNVMVTNYKPEENEIEIIGINYDITELKETEAELIQARDKAEMMDRLKSAFLA 706

Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650
            +SHEIRTPL AI+GFS+++              EY   +  + +L+L +++D+LD+SKI
Sbjct: 707 NMSHEIRTPLNAIVGFSDLLVETE----DVAERQEYIKIVRENNDLLLQLISDILDLSKI 762

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710
           E+G        V ++    + +  +++ A E  + +       +  +++D   + Q+  N
Sbjct: 763 EAGTFEFTNGDVDVNLLCEDIVRSMRMKAKE-DVELVLDNPLPVCHVISDRNRIHQVISN 821

Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
            ++NA+ FT  G  I +        E+   V+DTG+G+   +L    + F ++ +     
Sbjct: 822 FVNNAMKFTSEGS-IHVGYELKE-GELEFYVKDTGIGIEKEQLPHIFERFVKLNSFVH-- 877

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             GTGLGL + +++V+   G+  + S   KG+      P
Sbjct: 878 --GTGLGLSICQSIVEQLGGRIGVDSEKGKGSRFWFTIP 914



 Score = 48.1 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 53/154 (34%), Gaps = 10/154 (6%)

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG-YP 488
             G+  +   +    R ++       +I      G+ I +++G ++  N    ++FG   
Sbjct: 408 IVGLFLDSTGSVQANRALDRSEKLFKNIFANIPAGVEIYDKDGYLMDLNNKDLEIFGVVN 467

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG---STKEEKLLSLRIII 545
             D++   F      N P  +   +     +D R       +G    T    ++ L   +
Sbjct: 468 KSDVIGINFFE--NPNVPQSIRDRVRNEDLVDFRLNYSFEQIGGYYKTSRSNVIELYSKV 525

Query: 546 KKLPFSS----CYSLTMHDISEWKQEKNKLSHAK 575
            KL  +      Y L   D +E     N++   +
Sbjct: 526 SKLYDNEGNFSGYILISIDNTERIDAMNRIRDFE 559


>gi|222106443|ref|YP_002547234.1| Signal transduction histidine kinase [Agrobacterium vitis S4]
 gi|221737622|gb|ACM38518.1| Signal transduction histidine kinase [Agrobacterium vitis S4]
          Length = 784

 Score =  321 bits (822), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 120/624 (19%), Positives = 243/624 (38%), Gaps = 39/624 (6%)

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
           L  + S   E     +   ++               ++  + +  E +        TE  
Sbjct: 47  LADRESRKAENYVRVTFAIQQDILELHALLAEGASGVRGYLLTRDETFLAPYKKAVTELP 106

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE----YLSHRNHPSLSAYF 315
            +  +    + + E    +N  +    +    L +  + S        + R     +  F
Sbjct: 107 AVFAAMRPLIIDAEQLERLNRMEPLVDKKLKGLASLMQGSVSNNQIPEALRQTLIANKAF 166

Query: 316 DEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
            +   L    +                        +T   ++  +    G   L+    +
Sbjct: 167 LDELRLQIAEMRLREDALLAQRTAKADEIRALSQRITLLGAIAGVIGCIGAIVLMSKGIV 226

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
              + +K      +    +                           ++  E         
Sbjct: 227 RRVDRLKQAASRLAQGQSLRL--------------------AEHATDEIGELSSALEEAS 266

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILR 494
             +  R  +  +     +   +++   D GI  ++ +G ++S N    ++ GY  ++I+ 
Sbjct: 267 RLLTAR--EEALRESEERFRLLVDGVHDYGIFGLDADGTVVSWNAGAERIKGYRADEIIG 324

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554
           + F+ F            L E+        +E       K+       +++  L      
Sbjct: 325 QHFSRFYPLEHRDT--RPLQEMAQAAAFGRVEDEGWRLRKDGSRFWANVVMTALRDKQGQ 382

Query: 555 SL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
                    D+++ K+ +  L  A++ AE+ S  KS+FL+R+SHE+RTPL +++GF++++
Sbjct: 383 LRGFSKITRDVTDRKRTEEALLTARRDAERASQAKSEFLSRMSHELRTPLNSVLGFAQIL 442

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
                  + +    E    I R+G  +L +++++LDI++IE+G+M L  EPV LD+ V+E
Sbjct: 443 ----DMDIEDRDMRESLAQILRAGRHLLSLIDEVLDIARIEAGRMELLIEPVGLDDIVTE 498

Query: 671 AISLVQLYANEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIIST 729
           AI+L    A  K++ IR         I+A D R   Q+ LN+LSNA+ F   GG+I +S 
Sbjct: 499 AIALAAPLAEPKQLTIRVEMEAAGQTIVAVDRRRFLQVLLNLLSNAVKFNRDGGEIRLSA 558

Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
              +N  + + + DTG G+ + + ++  KPF ++   +     GTGLGL L+  ++ A  
Sbjct: 559 QLLTNTMIAIDIADTGCGIADVDRDRLFKPFERLGADRNATT-GTGLGLALSVNLMQAMD 617

Query: 790 GKFYIFSTPAKGTLIEIIFPLYDT 813
           G  ++  + A G++  I  P+   
Sbjct: 618 GDLFLTESDATGSVFSIHIPVSHA 641



 Score = 70.8 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 23/262 (8%), Positives = 62/262 (23%), Gaps = 13/262 (4%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID-PNNHIGDLLKRQNTWY 144
            + +DA G +   +    +  G  A ++IG        + H D                 
Sbjct: 295 IFGLDADGTVVSWNAGAERIKGYRADEIIGQHFSRFYPLEHRDTRPLQEMAQAAAFGRVE 354

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            +      +G+  +  + + AL    +  +  GF    I                  +  
Sbjct: 355 DEGWRLRKDGSRFWANVVMTAL--RDKQGQLRGFSK--ITRDVTDRKRTEEALLTARRDA 410

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
               + K    S    +       S     ++ +      +       +L+  ++ L   
Sbjct: 411 ERASQAKSEFLSRMSHELRT-PLNSVLGFAQILDMDIEDRDMRESLAQILRAGRHLLSLI 469

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD-------E 317
           +E     + +   + L            +  +  +      +    +            +
Sbjct: 470 DEVLDIARIEAGRMELLIEPVGLDDIVTEAIALAAPLAEPKQLTIRVEMEAAGQTIVAVD 529

Query: 318 GENLTPETVDKCPIPFFVYSHG 339
                   ++           G
Sbjct: 530 RRRFLQVLLNLLSNAVKFNRDG 551


>gi|315920124|ref|ZP_07916364.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|313693999|gb|EFS30834.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
          Length = 936

 Score =  321 bits (822), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 97/519 (18%), Positives = 194/519 (37%), Gaps = 29/519 (5%)

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIE 361
           L        +   D  E L        P    +Y   G L   N   L +    +  D+ 
Sbjct: 423 LDSTGSVQANRALDRSEKLFKNIFANIPAGVEIYDKDGYLMDLNNKDLEIFGVVNKSDVI 482

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                        + D    + ++ +R +    +        + +R N + +     +  
Sbjct: 483 GINFFENPNVPQSIRDRVRNEDLVDFRLN---YSFEQIGGYYKTSRSNVIELYSKVSKLY 539

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA---IINREGI-ILST 477
           +          I  ++ +      ++         I +    G A   ++NR+G  I   
Sbjct: 540 DNEGNFSGYILISIDNTERIDAMNRIRDFENFFLMISDYAKVGYAKLNLLNRKGYAIKQW 599

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
            + + +    P+ +++       +          +  E+     R   +          K
Sbjct: 600 YKNLGEEEDIPLSEVVG--VYGKMHPEDRKRFFDFYDEVKKGKRRH-FQGEVRIRRPGTK 656

Query: 538 --LLSLRIIIK-----KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
                +   +                  +DI+E K+ + +L  A+  AE     KS FLA
Sbjct: 657 NEWNWVNSNVMVTNYKPEENEIEIIGINYDITELKETEAELIQARDKAEMMDRLKSAFLA 716

Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650
            +SHEIRTPL AI+GFS+++              EY   +  + +L+L +++D+LD+SKI
Sbjct: 717 NMSHEIRTPLNAIVGFSDLLVETE----DVAERQEYIKIVRENNDLLLQLISDILDLSKI 772

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710
           E+G        V ++    + +  +++ A E  + +       +  +++D   + Q+  N
Sbjct: 773 EAGTFEFTNGDVDVNLLCEDIVRSMRMKAKE-DVELVLDNPLPVCHVISDRNRIHQVISN 831

Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
            ++NA+ FT  G  I +        E+   V+DTG+G+   +L    + F ++ +     
Sbjct: 832 FVNNAMKFTSEGS-IHVGYELKE-GELEFYVKDTGIGIEKEQLPHIFERFVKLNSFVH-- 887

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             GTGLGL + +++V+   G+  + S   KG+      P
Sbjct: 888 --GTGLGLSICQSIVEQLGGRIGVDSEKGKGSRFWFTIP 924



 Score = 48.1 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 53/154 (34%), Gaps = 10/154 (6%)

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG-YP 488
             G+  +   +    R ++       +I      G+ I +++G ++  N    ++FG   
Sbjct: 418 IVGLFLDSTGSVQANRALDRSEKLFKNIFANIPAGVEIYDKDGYLMDLNNKDLEIFGVVN 477

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG---STKEEKLLSLRIII 545
             D++   F      N P  +   +     +D R       +G    T    ++ L   +
Sbjct: 478 KSDVIGINFFE--NPNVPQSIRDRVRNEDLVDFRLNYSFEQIGGYYKTSRSNVIELYSKV 535

Query: 546 KKLPFSS----CYSLTMHDISEWKQEKNKLSHAK 575
            KL  +      Y L   D +E     N++   +
Sbjct: 536 SKLYDNEGNFSGYILISIDNTERIDAMNRIRDFE 569


>gi|303327814|ref|ZP_07358254.1| sensory box histidine kinase/response regulator [Desulfovibrio sp.
           3_1_syn3]
 gi|302862175|gb|EFL85109.1| sensory box histidine kinase/response regulator [Desulfovibrio sp.
           3_1_syn3]
          Length = 1165

 Score =  321 bits (822), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 115/641 (17%), Positives = 210/641 (32%), Gaps = 46/641 (7%)

Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS---- 241
             RV+   R L          L+    G     ++    F+  +    L           
Sbjct: 258 ERRVEERTRQLRASQAHSLRLLNATSDGIIGTGRDGAISFANSAAQAMLGYAENELIGRN 317

Query: 242 -SLTEYYAHKDDVLKTEKY----PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS 296
              T +    D     ++           E+     + F   N +          +  + 
Sbjct: 318 LHETLHPVLPDGSRNPKESCTLCRARLGSENMRFSLKSFLHKNGSIVLVDGSIAPILEDG 377

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYK 355
             +   L+  +         + E       D     FF++     L   N + +      
Sbjct: 378 AATGSILAFHDVG----AAYKTELWQRLIFDSAGETFFIWDENHKLRDCNAAAVKWLGVG 433

Query: 356 S-VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
           S  + +     L   L         A+  V      +  + A         +      + 
Sbjct: 434 SKEEALARIKELQPPLQEDGTPTARALARVFSLCDRKGMVHACWIFR--HADGSP---LP 488

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII 474
                                +  + R  +  ++ E   L  ++EA    + I   E   
Sbjct: 489 CEGVMVRLTSSLGRGYFASVHDLREIRAYEATLQNERRLLSDVVEAAPSAMLICTGESNA 548

Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST- 533
              N + + L G    +                                 +         
Sbjct: 549 RMFNPSAALLTGLAAGE------NCSGIWADYQGYLDLCAGAEQGLPAVNVPMAVRRLDA 602

Query: 534 KEE--KLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
            +   +     I       +    + + DI+       +L  A+  AE  +  KSDFLAR
Sbjct: 603 PDGPCRETLASISTINYRGNPAQLIWLQDIT-------ELRAARLAAEASTRAKSDFLAR 655

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           +SHEIRTP+ AI+G + ++   R     + R   Y     ++   +L ++ND+LD SKIE
Sbjct: 656 MSHEIRTPMNAILGMTHLLLQTRV----DERQRHYLESTRQAARNLLGLLNDILDFSKIE 711

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALN 710
           +G+M +   P  L E +     L+   A EK + +      ++P  ++ D     Q+  N
Sbjct: 712 AGRMTMENAPFLLSEVLENLADLLVFSAAEKGLELLFYVGPDVPYALVGDRLRFSQVLTN 771

Query: 711 ILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
           + +NA+ FT  G  + +S    S +     + + VRDTG+G+T  +     + F Q+  S
Sbjct: 772 LANNALKFTHQGS-VTLSVHLESKDAHQARLRVEVRDTGIGLTREQAGTLFQAFQQVDTS 830

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
              R  GTGLGL + + +V    G+  + S P KG++    
Sbjct: 831 TTRRYGGTGLGLAICERLVGMMDGRIRVESEPGKGSVFAFT 871



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 56/486 (11%), Positives = 126/486 (25%), Gaps = 35/486 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI-------GDLLKRQN 141
               G +   +      +G    ++IG  L +    +  D + +           L  +N
Sbjct: 289 TGRDGAISFANSAAQAMLGYAENELIGRNLHETLHPVLPDGSRNPKESCTLCRARLGSEN 348

Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
             +   +     G+   V +D +  PI   +   +G       H            + + 
Sbjct: 349 MRFSLKSFLHKNGSI--VLVDGSIAPIL-EDGAATG--SILAFHDVGAAYKTELWQRLIF 403

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
                   I   +  +                     ++  L                 +
Sbjct: 404 DSAGETFFIWDENHKLRDCNAAAVKWLGVGSKEEALARIKELQPPLQEDGTPTARALARV 463

Query: 262 LTSEESSLPEQE--DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP--SLSAYFDE 317
            +  +          F   + +    +     L ++    +    H      +  A    
Sbjct: 464 FSLCDRKGMVHACWIFRHADGSPLPCEGVMVRLTSSLGRGYFASVHDLREIRAYEATLQN 523

Query: 318 GENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVD----DIEIAGGLSTLLDA 372
              L  + V+  P    + +   N    NPS  LLT   + +          G   L   
Sbjct: 524 ERRLLSDVVEAAPSAMLICTGESNARMFNPSAALLTGLAAGENCSGIWADYQGYLDLCAG 583

Query: 373 PKLSDNNAIKPVMLYRS---DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
            +        P+ + R    D  C    A + TI +    +  +      +         
Sbjct: 584 AEQGLPAVNVPMAVRRLDAPDGPCRETLASISTINYRGNPAQLIWLQDITELRAARLAAE 643

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA--IINREGI--ILSTNRAVSKLF 485
            +     D   R++          + +IL   +  +    ++      + ST +A   L 
Sbjct: 644 ASTRAKSDFLARMSHEI----RTPMNAIL-GMTHLLLQTRVDERQRHYLESTRQAARNLL 698

Query: 486 GYPVEDILRKPFT--VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           G   + +            +N P +++  L  +  L +    EK           +   +
Sbjct: 699 GLLNDILDFSKIEAGRMTMENAPFLLSEVLENLADLLVFSAAEKGLELLFYVGPDVPYAL 758

Query: 544 IIKKLP 549
           +  +L 
Sbjct: 759 VGDRLR 764


>gi|295705734|ref|YP_003598809.1| two-component sensor histidine kinase/response regulator [Bacillus
           megaterium DSM 319]
 gi|294803393|gb|ADF40459.1| two-component sensor histidine kinase/response regulator [Bacillus
           megaterium DSM 319]
          Length = 995

 Score =  321 bits (822), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 110/426 (25%), Positives = 185/426 (43%), Gaps = 23/426 (5%)

Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK-MEIEVMQ------ 453
             I++  +       I         +     G   +  + +I + + ++ E  Q      
Sbjct: 78  QYIEYEGKFRGIYYVIYLRPLFHKDKVAEVVGTCVDITNKKIMEEEILQKEQEQKLMNSY 137

Query: 454 --LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE--DILRKPFTVFLEQNTPSVM 509
               S+++    GIA+ +    I   NR   +LF    E    +    +         + 
Sbjct: 138 AFQRSLIDWLDSGIAVTDCNKKIRLLNRKFYELFQLKGEIDCHIGMHASDLHYLFDKEIN 197

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN 569
              L             KI  G T       L     +      Y     DI+E K+ + 
Sbjct: 198 KIKLENTEKRTKTTKEIKINTGMTLRYNCFPLN----EKNNFVGYLWEFEDITEQKKMER 253

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
            +  AK+ AEK +  KS FL+++SHE+RTPL  I+GF+++++        N +  ++   
Sbjct: 254 VIVQAKEEAEKVNMAKSSFLSKMSHELRTPLNGILGFAQLLE---MDESLNEQQHDFVQE 310

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I   G+ +L ++ND+LD+S+IE+G + +  E V L   + E I++VQ  A +K I I + 
Sbjct: 311 ILSGGSHLLSLINDILDVSRIETGNLKISVEEVHLLTVIKECINIVQPLAKKKNISIYSQ 370

Query: 690 FAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748
                   +LAD   +KQI LN+L NAI +    G++I+      N++  + + DTGVG 
Sbjct: 371 LDQWEDMMVLADPIRLKQILLNLLDNAIKYNQENGKVIVFCRLQENKQ-YIHIVDTGVGF 429

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           +  E  K   PF +I N+   + EGTG+GL L K +V    G   + S    G+      
Sbjct: 430 SVEEYTKVFVPFYRIENT---KEEGTGIGLSLVKQLVHLMGGDINVTSNKGTGSEFCFSL 486

Query: 809 PLYDTS 814
           PL + S
Sbjct: 487 PLPNDS 492


>gi|228943228|ref|ZP_04105695.1| hypothetical protein bthur0008_58140 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228973131|ref|ZP_04133722.1| hypothetical protein bthur0003_28930 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228979667|ref|ZP_04139992.1| hypothetical protein bthur0002_28420 [Bacillus thuringiensis Bt407]
 gi|228780062|gb|EEM28304.1| hypothetical protein bthur0002_28420 [Bacillus thuringiensis Bt407]
 gi|228786589|gb|EEM34577.1| hypothetical protein bthur0003_28930 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228816436|gb|EEM62594.1| hypothetical protein bthur0008_58140 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|326940222|gb|AEA16118.1| sporulation kinase [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 801

 Score =  321 bits (822), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 102/532 (19%), Positives = 210/532 (39%), Gaps = 47/532 (8%)

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVD-----KCPIPFFVYSHGNLFYANPSFLLL 351
            +  E +      +     +   + T E ++                G++  AN ++  +
Sbjct: 294 GQVIEVVGSTVDITERKKVESELSATKELLESFIKHNLDAITISDREGHILQANKAYEKI 353

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ-WNRENS 410
             + S + I            P + D    + +   +   T  +   RL T++  +  + 
Sbjct: 354 FGWSSQEIIGKRL--------PCVPDFLMEESLKNIQKILTGESVVTRLETVRQRSDGSL 405

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK-------MEIEVMQLCSILEATSD 463
           L ++       +     +  + I  +  + +  +R+       +    M+  +++E  +D
Sbjct: 406 LDISLTVSPILDVRGNVIALSAICRDISERKQAERERHRLHQQLRDSEMKYRALIEQATD 465

Query: 464 GIAI--INREG---IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
            + +  +N +      +  N    + FGY  E++L   F+  + Q++   +   L +I  
Sbjct: 466 AVYVVELNEDNAPSRFIEVNPVGCRRFGYSREELLSLSFSNIVPQDSKITVR-LLEKIKK 524

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578
                TL+   +  T +       + +  L     +     DI+E  + +  L  ++K+A
Sbjct: 525 GQTSFTLQDEYVFPTGKVITTEFSVRVFNLNGKKVFLSISRDITERLKTEELLRKSEKLA 584

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
                        ++HEI  PLTA+ GF +++K+       N     Y N +      + 
Sbjct: 585 VV-----GQLATVMAHEINNPLTAMKGFMQLLKSTE-----NENNQGYINIVSSEIERIE 634

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
            I  + + ++K +  KM  +    ++   + + + L+Q  +    I  R      IP I 
Sbjct: 635 SITTEFMAVAKPQVVKMQPN----NISVLMDQVLMLLQPQSMMHNIKFRIDLNPGIPLIS 690

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
            +   +KQ+ +NIL NAI   P GG+I+I      N +V +R  D G G+    +    +
Sbjct: 691 CEGNQLKQVFVNILKNAIESMPMGGEILIQINILDNNQVSIRFIDQGCGIPKERIPYLGE 750

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           PF        I+ EG GLGL +   +++ + GK +I S   KGT +E+  P+
Sbjct: 751 PFY------SIKEEGIGLGLMICYKIIETHQGKIFIKSEMNKGTTVEVTLPI 796



 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 44/286 (15%), Positives = 91/286 (31%), Gaps = 21/286 (7%)

Query: 313 AYFDEGENLTPETVDKCPIPFF----VYSHGNLFYANPSFLLLTKYKSVDDIEI-AGGLS 367
               + +    +TV +     F    V  H      +  F     + S   +      + 
Sbjct: 186 RELKKSKQELADTVHELQGGIFKFKKVDKHFIHTLCDGQFYYQNGFYSEQVVGKSLRTID 245

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
             +  P L          L   +   I        + W  + ++ +         +  + 
Sbjct: 246 ASIVPPHLVPQLMKY--YLQAWEGKEIIFE-----LPWPNDKTIILI--ALRPIKRNGQV 296

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
           +   G   +  + +  + ++      L S ++   D I I +REG IL  N+A  K+FG+
Sbjct: 297 IEVVGSTVDITERKKVESELSATKELLESFIKHNLDAITISDREGHILQANKAYEKIFGW 356

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
             ++I+ K     +           + +IL           T+    +  LL + + +  
Sbjct: 357 SSQEIIGKRL-PCVPDFLMEESLKNIQKIL-TGESVVTRLETVRQRSDGSLLDISLTVSP 414

Query: 548 LPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
           +               DISE KQ + +     +   ++S  K   L
Sbjct: 415 ILDVRGNVIALSAICRDISERKQAERERHRLHQQL-RDSEMKYRAL 459



 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/286 (12%), Positives = 84/286 (29%), Gaps = 23/286 (8%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG-KTT 148
           D  G++ + ++   K  G  + ++IG RL  V D L  +   +I  +L  ++     +T 
Sbjct: 338 DREGHILQANKAYEKIFGWSSQEIIGKRLPCVPDFLMEESLKNIQKILTGESVVTRLETV 397

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +G+ L + + ++  PI              I               RL ++     
Sbjct: 398 RQRSDGSLLDISLTVS--PILDVRGNVIALS--AICRDISERKQAERERHRLHQQLRDSE 453

Query: 209 EIKKGHSSVEKEKYDIFSQQS-----------PPPHLR---MKNKVSSLTEY-YAHKDDV 253
              +       +   +                P    R    + ++ SL+      +D  
Sbjct: 454 MKYRALIEQATDAVYVVELNEDNAPSRFIEVNPVGCRRFGYSREELLSLSFSNIVPQDSK 513

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
           +       +   ++S   Q+++        T +               +LS     +   
Sbjct: 514 ITVRLLEKIKKGQTSFTLQDEYVFPTGKVITTEFSVRVFN--LNGKKVFLSISRDITERL 571

Query: 314 YFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVD 358
             +E    + +      +     +   N   A   F+ L K    +
Sbjct: 572 KTEELLRKSEKLAVVGQLATVMAHEINNPLTAMKGFMQLLKSTENE 617


>gi|171909587|ref|ZP_02925057.1| multi-sensor hybrid histidine kinase [Verrucomicrobium spinosum DSM
           4136]
          Length = 957

 Score =  321 bits (822), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 103/715 (14%), Positives = 214/715 (29%), Gaps = 65/715 (9%)

Query: 134 GDLLKRQNTWYGKTTLWPIEGTNLYVPIDLA-ALPIYSRNREFSGFRGFGIVHVNRVDND 192
              L    T +  T   P +G    VP+ L  A P         G    G+V    +   
Sbjct: 126 AAALGVGATAFVLTLYLPSQGEMGPVPLLLLVAYPA-----TLLGALWVGVVLALTLRLL 180

Query: 193 PRALGKRLDKKF--SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK 250
           PRA           + +  ++     ++ +  D            +     ++T      
Sbjct: 181 PRASWLIFLAALATTGMVWMQWNILQLQDKLADGTWFNLCFSLSILVLGYGAMTWRVQGL 240

Query: 251 DDVLKTEKYPLLTSEES---------SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301
                     +               S+   E F   +            L        +
Sbjct: 241 FHSRMERPCEVALRMLPLVLVMLAVISVVMAETFRQFSPAVQISVDIASALAVVLIIWRQ 300

Query: 302 YLSHRNHPS---LSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVD 358
            +          +     E E       +      F+ +       N   L L       
Sbjct: 301 NVMVSERDRRLLVEQRMRESEGRYQSLFESSLDGIFILNGQKFVDCNERALQLLACGREK 360

Query: 359 DIEIAG-GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
            I      +S           + +                     ++    +        
Sbjct: 361 IIGRLPLDISAERQPDGRLARDVVAEHFSVEEKGARRPFEW---LVKRPDGSLFDAEIS- 416

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
              A           +  +  + +  +  +     +  S  E+ + G+A++  +G  L  
Sbjct: 417 -VNALHVGGRTIVQAVVRDISERKRAEEALRTSEARFSSSFESAAIGMALVGTDGRFLKV 475

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
           N A+  + GY  E+++ K F      +        L + L+ D     +       +   
Sbjct: 476 NAALCAMLGYTPEELMEKTFQEITHPDNLPADMALLRKTLAGDRNS-YQMEKRYIHQGGA 534

Query: 538 LLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
           ++S  + +  +         ++  + D+++ K+ +++   ++K+              V+
Sbjct: 535 VVSALLSVSLVRDGKGRPLHFTAQIQDVTQRKKLEDQFRQSQKM-----EAVGQLAGGVA 589

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           H+    LT I G++ ++++    P            I  S      +   LL  S+    
Sbjct: 590 HDFNNILTVIQGYASLLQSGHISPADG------VREISASVERASSLTRQLLTFSR---- 639

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713
           K  +    + L+  V   I+L++    E  + +      ++P ++AD   ++QI LN+  
Sbjct: 640 KQIMQPRELDLNVVVQNMITLLRRTLGEH-VTLLVEADPHLPSVMADQGMMEQIILNLAV 698

Query: 714 NAIHFTPSGGQIIISTTH----TSNEE----------VILRVRDTGVGMTNYELEKAMKP 759
           NA      GG + + T                     V+++V DTG G+    L +  +P
Sbjct: 699 NARDAMCKGGTLTVHTGSAVITEEEARLHADARVGLAVLIKVTDTGYGIPVENLTRIFEP 758

Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           F           +GTGLGL     +V  + G   + S    GT  +I+ P    +
Sbjct: 759 FFTTK----EVNQGTGLGLATVHGIVRQHGGLVRVSSQLGVGTEFQILLPACRAA 809



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 45/481 (9%), Positives = 126/481 (26%), Gaps = 28/481 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +   G   +++  L   +G    +++     +++   ++  +  +       +    +  
Sbjct: 466 VGTDGRFLKVNAALCAMLGYTPEELMEKTFQEITHPDNLPADMALLRKTLAGDRNSYQME 525

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
              I      V   L+   +         F                   K+L+ +F    
Sbjct: 526 KRYIHQGGAVVSALLSVSLVRDGKGRPLHF---------TAQIQDVTQRKKLEDQFRQSQ 576

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           +++          +D  +  +         +   ++     ++     E+   LT +  +
Sbjct: 577 KMEAVGQLAGGVAHDFNNILTVIQGYASLLQSGHISPADGVREISASVERASSLTRQLLT 636

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
              ++      L+     Q   TL   +      L     P L +   +   +    ++ 
Sbjct: 637 FSRKQIMQPRELDLNVVVQNMITLLRRTLGEHVTLLVEADPHLPSVMADQGMMEQIILNL 696

Query: 329 CPIP-FFVYSHGNLFYANPSF------LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
                  +   G L     S         L     V    +     T    P  +     
Sbjct: 697 AVNARDAMCKGGTLTVHTGSAVITEEEARLHADARVGLAVLIKVTDTGYGIPVENLTRIF 756

Query: 382 KPVMLYRS-DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
           +P    +  ++      A +H I       + ++                        + 
Sbjct: 757 EPFFTTKEVNQGTGLGLATVHGIVRQHGGLVRVSSQLGVGTEFQILLPACRAAVKAPANP 816

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
              + K +                I +++ E  +   ++   K FGY V +       + 
Sbjct: 817 VEAEPKAKGGHET-----------ILLVDDEPALRLVSKMTLKHFGYHVLEAGSGRQALK 865

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
           + +  P  ++  LT+++  +     +   +       +  L      +   +       D
Sbjct: 866 VVEEHPEPIDLLLTDMVMPEGISGKDLADMLRDARPDMRVLFTSGYSVELLNRNIALPED 925

Query: 561 I 561
           +
Sbjct: 926 V 926



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/344 (8%), Positives = 89/344 (25%), Gaps = 24/344 (6%)

Query: 94  YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD--------LLKRQNTWYG 145
              + +E   + +     K+IG    D+S      P+  +          + ++      
Sbjct: 342 KFVDCNERALQLLACGREKIIGRLPLDISAE--RQPDGRLARDVVAEHFSVEEKGARRPF 399

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +  +   +G+     I + AL +  R           +V             +  + +FS
Sbjct: 400 EWLVKRPDGSLFDAEISVNALHVGGRT------IVQAVVRDISERKRAEEALRTSEARFS 453

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSP--PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL-- 261
              E      ++           +           ++   T       D L  +   L  
Sbjct: 454 SSFESAAIGMALVGTDGRFLKVNAALCAMLGYTPEELMEKTFQEITHPDNLPADMALLRK 513

Query: 262 -LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
            L  + +S   ++ +        +       +++       + +     +     ++   
Sbjct: 514 TLAGDRNSYQMEKRYIHQGGAVVSALLSVSLVRDGKGRPLHFTAQIQDVTQRKKLEDQFR 573

Query: 321 LTP--ETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
            +   E V +       +   N+      +  L +   +   +    +S  ++       
Sbjct: 574 QSQKMEAVGQLAGGVA-HDFNNILTVIQGYASLLQSGHISPADGVREISASVERASSLTR 632

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
             +            +  +  +  +      +L        +A+
Sbjct: 633 QLLTFSRKQIMQPRELDLNVVVQNMITLLRRTLGEHVTLLVEAD 676


>gi|323699230|ref|ZP_08111142.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           sp. ND132]
 gi|323459162|gb|EGB15027.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           desulfuricans ND132]
          Length = 643

 Score =  321 bits (822), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 93/424 (21%), Positives = 174/424 (41%), Gaps = 49/424 (11%)

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490
             IE  +   +   + ++    +  SI E   +GI     +G++   N A++++FGY   
Sbjct: 221 IEIEGRENKLQTMNKTLQEAEEKYRSIFENAIEGIFQATPDGVLRRANPAMARIFGYDSL 280

Query: 491 DILRKPFTVF--LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
           D                P  M  +   +      +  E        + K +   +  + +
Sbjct: 281 DEFLSNVRSLSSRIMVNPDHMQGFFDRVRDQGEVKRFEAEYYRR--DGKTIWGSLNARAI 338

Query: 549 PFSSC----YSLTMHDISEWKQEKN-------------------------KLSHAKKIAE 579
                        + DI++ K+ +                          +L  A +   
Sbjct: 339 HDERGNFVFVDGILEDITDRKKAEQDLADLNRHLEQLVRERTEDLVNKARELEEANQRLR 398

Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ---RFGPLGNP---------RYIEYA 627
           +    KS FL+ VSHE+RTPLT+I+GF++++  +    F PL +P         R  E  
Sbjct: 399 ELDEMKSAFLSSVSHELRTPLTSILGFAKLLNKEFTRNFLPLVSPEGALARKGKRIRENL 458

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
             I   G  +  ++ND+LD++KIESG M    E + ++E +  A S V     +  + +R
Sbjct: 459 AIISHEGERLTRLINDVLDLNKIESGSMGWRDEELDMNEVIEVAASSVSGMFAQTTLELR 518

Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747
           T     +P I+AD   ++Q+ +N+L+NA  FT  G  + +        ++ + V DTG G
Sbjct: 519 TEIQPGLPHIVADRDRMQQVLINLLNNASKFTEKGS-VTLR-AFPRFSQLRVEVVDTGTG 576

Query: 748 MTNYELEKAMKPFGQIPNSQQ--IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +   +  +  + F Q         + +GTGLGL + + +++   G+ ++ S    G+   
Sbjct: 577 IHPEDQSQIFEKFHQTHTDDTMVNKPKGTGLGLTICREIIEHYGGRIWVESEVGVGSTFI 636

Query: 806 IIFP 809
              P
Sbjct: 637 FTLP 640



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/129 (10%), Positives = 37/129 (28%), Gaps = 7/129 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN---NHIGDLLKRQNT 142
            +     G L+  +  + +  G  +       +  +S  + ++P+        +  +   
Sbjct: 255 IFQATPDGVLRRANPAMARIFGYDSLDEFLSNVRSLSSRIMVNPDHMQGFFDRVRDQGEV 314

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
              +   +  +G    +   L A  I+     F    G  I+               L++
Sbjct: 315 KRFEAEYYRRDGKT--IWGSLNARAIHDERGNFVFVDG--ILEDITDRKKAEQDLADLNR 370

Query: 203 KFSHLHEIK 211
               L   +
Sbjct: 371 HLEQLVRER 379


>gi|229115874|ref|ZP_04245272.1| hypothetical protein bcere0017_21650 [Bacillus cereus Rock1-3]
 gi|228667617|gb|EEL23061.1| hypothetical protein bcere0017_21650 [Bacillus cereus Rock1-3]
          Length = 801

 Score =  321 bits (822), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 102/532 (19%), Positives = 211/532 (39%), Gaps = 47/532 (8%)

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVD----KCPIPFFV-YSHGNLFYANPSFLLL 351
            +  E +      +     +     T E ++           +    G++  AN ++  +
Sbjct: 294 GQVIEVVGSTVDITERKKVESELRATKELLESFIKHNVDAITISDREGHILQANKAYEKI 353

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN-RENS 410
             +   + I            P + D    + +   +   T  +   RL T++     + 
Sbjct: 354 FGWSLEEIIGKRL--------PCVPDFLMEESLENIQKILTGESVVTRLETVRRRNDGSL 405

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK-------MEIEVMQLCSILEATSD 463
           L ++       +     +  + I  +  + +  +R+       ++   M+  +++E  +D
Sbjct: 406 LDVSLTVSPILDVRGNVIALSAICRDISERKQAERERHQLHQQLKDSEMKYRALIEQATD 465

Query: 464 GIAIINREG-----IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
            + ++           +  N    K FGY  E++L  PF   + Q++  ++   L +I  
Sbjct: 466 AVYVVELNENYVPSRFIEVNPVGCKRFGYSREELLSLPFPNVVPQDSKMIVR-LLEKIRE 524

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578
            +   TL+      T +       + +  L     +     DI+E  + +  L  ++K+A
Sbjct: 525 GETSFTLQDEYAFPTGKIITTEFSVRVFNLNGKKVFLSISRDITERLKTEELLRKSEKLA 584

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
                        ++HEI  PLTA+ GF +++K+             Y N +      + 
Sbjct: 585 VV-----GQLATAMAHEINNPLTAMKGFMQLLKSTE-----TENNQGYINIVSSEIERIE 634

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
            I N+ + ++K +  K+  +     +   + + + L+Q  A    I IR  F   IP I 
Sbjct: 635 SITNEFMAVAKPQVVKIQPN----DISVLMDQVLMLLQPQAMMNNIKIRIDFTPGIPLIP 690

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
            +   +KQ+ +NI+ NAI   P+GG+I+I      N ++ +R  D G G+    +    +
Sbjct: 691 CEGNQLKQVFVNIIKNAIESMPTGGEILIQFDKLDNNQIRIRFIDQGCGIPKERIPYLGE 750

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           PF        I+ EG GLGL +   +++ + GK +I S   KGT++E+  P+
Sbjct: 751 PFY------SIKEEGIGLGLMVCYKIIETHQGKVFIESEVNKGTIVEVTLPI 796



 Score =  111 bits (278), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 42/280 (15%), Positives = 88/280 (31%), Gaps = 20/280 (7%)

Query: 313 AYFDEGENLTPETVDKCPIPFF----VYSHGNLFYANPSFLLLTKYKSVDDIEI-AGGLS 367
               + +    +TV +     F    V  H      +  F     + S   +      + 
Sbjct: 186 RELKKSKQELTDTVHELQGGIFKFKKVGKHFIHTLCDGQFYYQKGFYSEQVVGKSLRTID 245

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
             +  P L          L   +   I        + W  + ++ +         +  + 
Sbjct: 246 ASIVPPHLVSQLMKY--YLQAWEGKEIIFE-----LSWPDDKTIILI--ALRPIKRNGQV 296

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
           +   G   +  + +  + ++      L S ++   D I I +REG IL  N+A  K+FG+
Sbjct: 297 IEVVGSTVDITERKKVESELRATKELLESFIKHNVDAITISDREGHILQANKAYEKIFGW 356

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
            +E+I+ K     +           + +IL           T+    +  LL + + +  
Sbjct: 357 SLEEIIGKRL-PCVPDFLMEESLENIQKIL-TGESVVTRLETVRRRNDGSLLDVSLTVSP 414

Query: 548 LPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESS 583
           +               DISE KQ + +     +  +    
Sbjct: 415 ILDVRGNVIALSAICRDISERKQAERERHQLHQQLKDSEM 454



 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/287 (13%), Positives = 81/287 (28%), Gaps = 25/287 (8%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG-KTT 148
           D  G++ + ++   K  G    ++IG RL  V D L  +   +I  +L  ++     +T 
Sbjct: 338 DREGHILQANKAYEKIFGWSLEEIIGKRLPCVPDFLMEESLENIQKILTGESVVTRLETV 397

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +G+ L V + ++  PI              I               +L ++     
Sbjct: 398 RRRNDGSLLDVSLTVS--PILDVRGNVIALS--AICRDISERKQAERERHQLHQQLKDSE 453

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLR--------------MKNKVSSLT-EYYAHKDDV 253
              +       +   +          R               + ++ SL       +D  
Sbjct: 454 MKYRALIEQATDAVYVVELNENYVPSRFIEVNPVGCKRFGYSREELLSLPFPNVVPQDSK 513

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
           +       +   E+S   Q+++        T +               +LS     +   
Sbjct: 514 MIVRLLEKIREGETSFTLQDEYAFPTGKIITTEFSVRVFN--LNGKKVFLSISRDITERL 571

Query: 314 YFDEGENLTP--ETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVD 358
             +E    +     V +       +   N   A   F+ L K    +
Sbjct: 572 KTEELLRKSEKLAVVGQLATA-MAHEINNPLTAMKGFMQLLKSTETE 617


>gi|257870079|ref|ZP_05649732.1| histidine kinase [Enterococcus gallinarum EG2]
 gi|257804243|gb|EEV33065.1| histidine kinase [Enterococcus gallinarum EG2]
          Length = 613

 Score =  321 bits (822), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 91/454 (20%), Positives = 185/454 (40%), Gaps = 32/454 (7%)

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA-SARLHTIQWN-RENSLAMTFIPFE 419
                + +     L        V L  S          R   I+    + S  +     +
Sbjct: 176 EVSDTAVIFVTASLIAAAISIVVALLVSRSITQPIGEMREQAIRIAKGDYSRKVAVHGQD 235

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
           +  Q  E   Q G   E+         ME E  +L S+L   +DG+   +R G +++ N 
Sbjct: 236 ELGQLAETFNQLGERIEETQE-----AMESERNRLDSVLSHMTDGVVATDRRGKVITINE 290

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
               L     E+ + +     L+ +        L ++L       +E+          +L
Sbjct: 291 MAMSLLNVTSEEAVGQSILTLLQIDEEYT----LRKLLESPDEMLIERPNNDIVGTNLIL 346

Query: 540 SLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
            +   + +      S     MHD++E ++ + +              + +F++ VSHE+R
Sbjct: 347 RIDFSMIRRESGFISGLVAVMHDVTEQEKNEQE--------------RREFVSNVSHELR 392

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TPLT++  + E +    +          +        + ++ ++NDLL +S+++SG   L
Sbjct: 393 TPLTSMRSYIEALSEGAWQ--DPEIAPNFLKVTLDETDRMIRMINDLLSLSRMDSGNAQL 450

Query: 658 HFEPVSLDEAVSEAISLVQLYA--NEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715
             E ++ +E VS  +    +      K+ +IR  F      +  D   + Q+  NI++NA
Sbjct: 451 QLEYINFNELVSFVLDRFDMMVTNENKKYVIRREFTKRELWVEVDTDKMIQVIDNIMNNA 510

Query: 716 IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           I ++P GG I +     ++  ++L + D G+G+   +L K    F ++  ++  +  GTG
Sbjct: 511 IKYSPDGGVITVKL-METHNNIVLSINDQGLGIPKKDLTKIFDRFYRVDKARARQQGGTG 569

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           LGL +++ ++ ++ G  +  S   +G+   I+ P
Sbjct: 570 LGLAISREVIKSHGGAIWAESRENRGSTFYIMLP 603



 Score = 40.0 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 45/143 (31%), Gaps = 7/143 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            D  G +  I+E     +   + + +G     +  +L ID    +  LL+  +    +  
Sbjct: 279 TDRRGKVITINEMAMSLLNVTSEEAVGQS---ILTLLQIDEEYTLRKLLESPDEMLIERP 335

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
              I GTNL + ID +   I   +   SG     ++H            +      SH  
Sbjct: 336 NNDIVGTNLILRIDFSM--IRRESGFISGL--VAVMHDVTEQEKNEQERREFVSNVSHEL 391

Query: 209 EIKKGHSSVEKEKYDIFSQQSPP 231
                      E     + Q P 
Sbjct: 392 RTPLTSMRSYIEALSEGAWQDPE 414


>gi|119898866|ref|YP_934079.1| putative two-component hybrid sensor and regulator [Azoarcus sp.
           BH72]
 gi|119671279|emb|CAL95192.1| putative two-component hybrid sensor and regulator [Azoarcus sp.
           BH72]
          Length = 831

 Score =  321 bits (822), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 95/406 (23%), Positives = 177/406 (43%), Gaps = 16/406 (3%)

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
                    +       D    +R+++I    L   L     G+     +   L  +   
Sbjct: 3   AGPATPEGDDQRTAPAADAASLRRELQITREHLHLALLGEGGGVWAWQLDSDELQLDEGA 62

Query: 482 SKLFGYPVEDILRKP--FTVFLEQNTPSVMNHYLTEILSLDLRQTL-EKITLGSTKEEKL 538
            +  GYP   +   P  +   L       ++  L   L  +  Q   E     +    + 
Sbjct: 63  WRWLGYPPGSVGPHPADWLPLLRSEDADTLHARLAAHLRGETPQLDCEFGLRAADGNWRW 122

Query: 539 LSLRIIIKKLPFSSCY---SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
           + +    K+      +   +    D++  +  + +L  AK+ AE  S  K +FLA +SHE
Sbjct: 123 VQVLGQAKERGADGRWRQLAGIYRDVTRHRLRELELLQAKEAAEAASRAKGEFLANMSHE 182

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           IRTP+  I+G ++++ +    P       +Y   +  S   +L ++ND+LD S+IE+G++
Sbjct: 183 IRTPMNGILGMTDLLLDSALAP----EQRDYLQTVKSSAEALLTLLNDILDFSRIEAGRL 238

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSN 714
           +L     S+   V+E +  + L A++K + +    A ++P +L  D   ++Q+  N++ N
Sbjct: 239 SLEEIDFSISGLVAETLRTLALRAHQKGVELFFDVAPDVPAVLKGDPARIRQVLTNLVGN 298

Query: 715 AIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           AI FT  G +I +  T    ++    +++ VRDTG+G+   + E     F Q  NS   +
Sbjct: 299 AIKFTERG-EIELDVTVVDTDDRHATLLVTVRDTGIGIPAEKTEAIFGAFAQADNSTTRK 357

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
             GTGLGL + K +V+   G+  + ST  +G+       L   + P
Sbjct: 358 YGGTGLGLAICKHLVELMGGELRVQSTLGEGSRFSFSLRLARVASP 403


>gi|116873864|ref|YP_850645.1| histidine kinase [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|116742742|emb|CAK21866.1| histidine kinase [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 591

 Score =  321 bits (822), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 82/368 (22%), Positives = 169/368 (45%), Gaps = 29/368 (7%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           +++    +L +I++    G+ +IN +  ++ TNR + ++ G    +I  KPF   ++   
Sbjct: 246 EIKQNEQRLNAIVQNLVSGVMLINVDKQVIMTNRTMYQILG--ESEITGKPFYEVIKSF- 302

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISE 563
              ++  +         Q  +K  +     E +L   +              L +HDI++
Sbjct: 303 --ALSQLIETTFETKTMQ--QKEIILYFPREMILDASVSPILAEDGEITGIILLLHDITQ 358

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            +  +N               +S+F+  VSHE++TP+TA+ GF+E + +   G + +   
Sbjct: 359 IRHLENV--------------RSEFVTNVSHELKTPVTALKGFAETLLD---GAMYDEIL 401

Query: 624 -IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             ++   I    + +  ++ D+L +S+IE   +  + E V +DE + ++   +   A  K
Sbjct: 402 LKKFLTIIKEESDRLHRLIMDILALSRIEQNPVTENIELVDVDEVIEQSARTIFEMATGK 461

Query: 683 RILIRT-SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
            I +           I  D   ++QI +N+LSNAI++TP  G++ +        EVI+ V
Sbjct: 462 NIHVSVPEKNITPVIIETDRDKLQQILINLLSNAINYTPLDGKVEVKL-IEHEAEVIIEV 520

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            D G+G+   ++++  + F ++  ++     GTGLGL + K +V+   G+  + S    G
Sbjct: 521 TDNGIGIPAKDIDRVFERFYRVDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVG 580

Query: 802 TLIEIIFP 809
           +   +  P
Sbjct: 581 STFRVTLP 588


>gi|119490613|ref|ZP_01623018.1| putative sensory histidine kinase protein [Lyngbya sp. PCC 8106]
 gi|119453778|gb|EAW34935.1| putative sensory histidine kinase protein [Lyngbya sp. PCC 8106]
          Length = 663

 Score =  321 bits (822), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 112/394 (28%), Positives = 172/394 (43%), Gaps = 34/394 (8%)

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN-RAVSKLFGYPVEDILRKPFTVFL 501
               +     +  ++L A  D +   +REGI L         L    +   L K      
Sbjct: 259 RAEALRQSEAKNRALLNAIPDLMFRFSREGIFLDFKVPRNEDLLK-SLSKYLNKTVYDLF 317

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDI 561
            ++       Y+ E L  +  Q  E       K       RI++            + DI
Sbjct: 318 PEHVAKQYMEYVLESLRTNEIQIFEYEWFIKGK-RHHFEARIVVS---GRDEVLAIVRDI 373

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           ++ K  + +L  AK+ AE  +  KS+FLA +SHE+RTPL AIIG+S+ +  +     G  
Sbjct: 374 TDNKLAQIELQQAKEAAEAANQAKSEFLASMSHELRTPLNAIIGYSD-LLREDAEDYGYT 432

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
            ++     I  SG  +L ++ D+LDISK+ESG+MNL+ E   +   ++E  +++Q   N+
Sbjct: 433 DFVPDLEQIKSSGLHLLSLIQDILDISKLESGEMNLYLEHFDIATLINEVQAIIQPLVNQ 492

Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT--------- 732
            +   +      I  + AD   VKQ  LN+LSNA  FT  G  + +  T T         
Sbjct: 493 NQNQFKIDCVQPIGSMYADRTKVKQALLNLLSNAAKFTKEG-TVTLKVTRTLFPLQNGQT 551

Query: 733 -----------------SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
                            S + V   V DTG+GMT  ++EK   PF Q  NS   +  GTG
Sbjct: 552 HSDPKSINHSHHSEKRLSEDWVTFSVEDTGIGMTPEQVEKIFDPFVQADNSTTKQYGGTG 611

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           LGL +++   +  MGK  + ST   G+   I  P
Sbjct: 612 LGLSISQRFCEMMMGKITVESTIKVGSTFSIKLP 645


>gi|88603925|ref|YP_504103.1| multi-sensor signal transduction histidine kinase [Methanospirillum
           hungatei JF-1]
 gi|88189387|gb|ABD42384.1| Cache sensor signal transduction histidine kinase [Methanospirillum
           hungatei JF-1]
          Length = 646

 Score =  321 bits (822), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 82/258 (31%), Positives = 144/258 (55%), Gaps = 4/258 (1%)

Query: 557 TMHDISEWKQE-KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
            + + ++  +     L   +  AE+    KS FLA +SHE+RTPL +IIGF+ +I     
Sbjct: 390 LVRERTQQLEAANTDLITERNRAEEADQLKSAFLATMSHELRTPLNSIIGFTGIILQGLA 449

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
           GPL N    +    +  S   +L ++ND+LDISKIE+G++N+  EPV++ +++    + +
Sbjct: 450 GPL-NKEQEKQLGMVQDSARHLLALINDVLDISKIEAGELNISREPVNIQKSIESVCTTL 508

Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
           +  A +K + +    + +   I+ D R ++QI +N+++NAI FT  G  + + ++     
Sbjct: 509 RKSAEDKGLSLHVDISPDTGFIIGDQRRIEQILINLINNAIKFTERG-YVCVKSSLREKN 567

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            V + V DTG+G++  E++K  +PF QI      + EGTGLGL + K +V+ + G   + 
Sbjct: 568 -VCISVSDTGIGISEEEMKKLFRPFQQIDTGTTRKHEGTGLGLSICKKLVELHGGTIMVT 626

Query: 796 STPAKGTLIEIIFPLYDT 813
           S P KG+   +I P  + 
Sbjct: 627 SEPGKGSEFTVILPAGEE 644


>gi|300690102|ref|YP_003751097.1| sensor protein [Ralstonia solanacearum PSI07]
 gi|299077162|emb|CBJ49788.1| Sensor protein [Ralstonia solanacearum PSI07]
          Length = 995

 Score =  320 bits (821), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 95/574 (16%), Positives = 185/574 (32%), Gaps = 28/574 (4%)

Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
            + D        +      S   +       +          ++++           +  
Sbjct: 40  AQADDATRALQHMGQLLMPSASARMAKCAPVVAILLWTLAVLSIRHGQLRREN----QRR 95

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
               A      +     ++  P P             N +F  L        +       
Sbjct: 96  RHAEAALARQLDFQRMLLESLPFPLAAQDTQHRYVAVNAAFCNLFGQPRETMLGRTPTHL 155

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
            L  A   +            +            TI         + +          + 
Sbjct: 156 GLCCAHTTAR--VQDIDRRAAAAGQDTREEL---TITAADGRERRVLYWVAPFHQPDGQP 210

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII-----NREGIILSTNRAVS 482
                   +  + R  + + E    +L  I+E+    +             +        
Sbjct: 211 GGTVAALIDISELREAQERAEQRARRLRDIIESLPALVCQFEIRPGTARSRMRHMAGNAR 270

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
           +  G P  +   +  +     +             S      L++       +  +  L 
Sbjct: 271 ETLGVPTGEERVRLPSPARLVHQDDRRRMRDAARQSAAQLTLLDQQFRHVDGDGLVRWLH 330

Query: 543 IIIKKLPFSSCYSL---TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
              +        ++    ++D++  + + + L  A++ AE     K  FLA +SHEIRTP
Sbjct: 331 ARARPRREPDGRTVWNGYLYDVTVERAQADALEAARQAAESALRAKDRFLAMMSHEIRTP 390

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           +  ++G  E+++  R                  SG  +L I++D+LD +KIE+G + +  
Sbjct: 391 MNGVLGLVELLQRTRLER----EQQRMVTLAQESGRALLHILDDVLDHAKIEAGHLAITP 446

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHF 718
            P  L E     + L+   A+E+ + +R      +P  +  D   ++Q+  N+LSNAI F
Sbjct: 447 APTDLRELFDSTVGLLASRAHERSLAVRVDVDATVPATVSVDSMRLRQVLSNLLSNAIKF 506

Query: 719 TPSGGQIIISTTHTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           T  G  + +S            +I+RV DTG+G+          PF Q  +    R  GT
Sbjct: 507 TERGS-VRLSAACVEAAADTVRLIIRVSDTGIGIAPEAQATLFTPFVQADSRTTHRHGGT 565

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           GLGL +++ +     G   + STP  GT + +  
Sbjct: 566 GLGLAISRQLARLMGGSLDMDSTPGVGTTLTLRL 599



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/315 (9%), Positives = 72/315 (22%), Gaps = 28/315 (8%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDV----SDILHIDPNNHIGDLLKRQNTWYG 145
           D       ++       G     M+G     +    +       +         Q+T   
Sbjct: 124 DTQHRYVAVNAAFCNLFGQPRETMLGRTPTHLGLCCAHTTARVQDIDRRAAAAGQDTREE 183

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRG--FGIVHVNRVDNDPRALGKRLDKK 203
            T     +G    V   +A  P +  + +  G       I  +           +RL   
Sbjct: 184 LTIT-AADGRERRVLYWVA--PFHQPDGQPGGTVAALIDISELREAQERAEQRARRLRDI 240

Query: 204 FSHLHEIKKGHSSVEKEKYDIFS-----QQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
              L  +                      +        + +V   +       D  +  +
Sbjct: 241 IESLPALVCQFEIRPGTARSRMRHMAGNARETLGVPTGEERVRLPSPARLVHQDDRRRMR 300

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTK-KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
                S        + F  ++ +   +        +        +  +    ++     +
Sbjct: 301 DAARQSAAQLTLLDQQFRHVDGDGLVRWLHARARPRREPDGRTVWNGYLYDVTVERAQAD 360

Query: 318 GENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
                 +  +                A   FL +  ++    +    GL  LL   +L +
Sbjct: 361 ALEAARQAAESA------------LRAKDRFLAMMSHEIRTPMNGVLGLVELLQRTRL-E 407

Query: 378 NNAIKPVMLYRSDRT 392
               + V L +    
Sbjct: 408 REQQRMVTLAQESGR 422


>gi|17230367|ref|NP_486915.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17131969|dbj|BAB74574.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 1817

 Score =  320 bits (821), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 126/836 (15%), Positives = 269/836 (32%), Gaps = 128/836 (15%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNT----WY 144
             +  G + + +    +  G     + G     +S +  +D +  +   +  + T    W 
Sbjct: 579  TNLQGQILDWNPAAERMFGYSKNHICGQS---ISTLHKVDEDAALNSAIIAEITKQGRWS 635

Query: 145  GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            G+      +G+      +   + +     +        +            L +R +++F
Sbjct: 636  GEINFVRQDGSQGI--CETTIVALQDDQGQ--SMATISVNRDITERKHAELLLRRSEERF 691

Query: 205  SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
                      + +      I              +   L        +++      L  +
Sbjct: 692  QAFMNHSPTPAWITDIDGTIVYVSETY------RRTFQLPTQELIGKNIVDIYPPELTQT 745

Query: 265  EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE-------------YLSHRNHPSL 311
               ++        +     +     GT ++     F               +        
Sbjct: 746  FRETIQIVARTRQVMETVESAPCSDGTGRDFLVYKFPISSKPDECLIGCIAIDITERKQA 805

Query: 312  SAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
             A   + E      ++      + ++   N  + +  +  L K ++   I       + +
Sbjct: 806  EAALRKSEERWQLVIEGNQDAIWDWNIITNETFRSARWAELIKEQNYQPIADHADCVSRI 865

Query: 371  DAPKLSDNNAI-------------KPVMLYRSDRTCIAASARLHTIQWN--RENSLAMTF 415
                     A+                 L  +D +         T QW+        +  
Sbjct: 866  HPDDYERVMAVKQDCLSRKIPNYVVEYRLRCNDDSYRWVLVHA-TGQWDEQGNPVRMVGS 924

Query: 416  IPFEKANQFPENMPQNGIEPEDVDTRINK--RKMEIEVMQLCSILEATSDGIAI------ 467
            I         +   Q  +    +  +I +  R+         +        +A+      
Sbjct: 925  IKDITERIEAQEALQRQLHRTLLLEKITQKIRQSLDSKEIFETAATQIGQALAVDRCLIH 984

Query: 468  -----INRE-------GIILST------------NRAVSKLFG----YPVEDILRKPFTV 499
                  +           +L              N+ + K+          ++   P   
Sbjct: 985  SYISHHDPHIPLVAEYNNVLDYCSMQKWEFTTTGNQHILKMMSQDKAIASANVYTDPLLQ 1044

Query: 500  FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK------EEKLLSLRIIIKKLPFSSC 553
                +   +    +  + +    +    I L           E++  L  +  +L  +  
Sbjct: 1045 TAVPSCCEIGVKSMLAVRTSYQGEPSGAICLHQCGYFRQWTNEEIELLEAVAAQLGIALA 1104

Query: 554  YSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
             +  +   +  ++E       L  AK+ AE  +  KS+FLA +SHEIRTP+ A+IG + +
Sbjct: 1105 QAQLLEQETRQREELTIKNFALEQAKRAAEAANRAKSEFLAMMSHEIRTPMNAVIGMTGL 1164

Query: 610  IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
            + +         +  ++   +  SG+ +L I+ND+LD SKIESGK+ L  +P  +   V 
Sbjct: 1165 LLDTELTS----QQRDFVETVLTSGDALLSIINDILDFSKIESGKLELEEQPFEVRTCVE 1220

Query: 670  EAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
            + I L+   A +K I +       +P +I  DL  ++QI  N+L+NAI FTP G ++++S
Sbjct: 1221 QVIDLLAAKAAQKDIELAYLIHPQVPMQIAGDLTRLRQILTNLLNNAIKFTPEG-EVVVS 1279

Query: 729  TTHTSNE--------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
                 +         E+I  ++DTG+G+    ++   +PF Q   S   +  GTGLGL +
Sbjct: 1280 VRSQPSPNQKNKNCCEIIFTIKDTGIGIAPETMDLLFQPFVQADASMTRKYGGTGLGLVI 1339

Query: 781  AKAMVDANMGKFYIFST--------PA-------------KGTLIEIIFPLYDTSH 815
            +K + +   G  ++ S         P               G+       +   +H
Sbjct: 1340 SKRLGEMMGGYLWVESRGCVGGNPPPGWQTKNSISSASVATGSTFYFSMTVPVVAH 1395



 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 45/507 (8%), Positives = 146/507 (28%), Gaps = 21/507 (4%)

Query: 82  TVRFT-WNIDA-HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG---DL 136
           TVR   W  D    +   +  ++   +     +       D + +  +D +  +    + 
Sbjct: 323 TVRVIPWEFDLKTQHFTYVGPQVETLLAYPVAQWYEENFWD-NHLHTLDRDWAVRFCQEA 381

Query: 137 LKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRAL 196
             +      +  +   +G  +++   +  + +   +      RGF +  +  +      L
Sbjct: 382 ANKGQNHELEYRMLAADGRVVWLRDVVNVVQV---DGTPVMLRGF-MFDITDLKRVEETL 437

Query: 197 GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256
             R     +  + I    + +        +            +V      +   +D  ++
Sbjct: 438 RLRERALAASSNGIVISDAKLPHYPVIYVNSAFEQITGYKATEVVGRNCRFLLGNDTQQS 497

Query: 257 EKYPLLTSEESSLPEQEDFH--TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
               L ++ ++    +        + + +  +     + N++ +   ++  +   S    
Sbjct: 498 AIEELRSALKAGKNCKVILRNYRKDGSLFWNQLSVSPIYNDNGQLSHFIGIQTDISDRQQ 557

Query: 315 FDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
            +        T +       + +  G +   NP+   +  Y          G S      
Sbjct: 558 AEASLRRQALTFENIYDGVIITNLQGQILDWNPAAERMFGYSK----NHICGQSISTLHK 613

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
              D      ++   + +   +       ++ +    +  T I     +   ++M    +
Sbjct: 614 VDEDAALNSAIIAEITKQGRWSGEINF--VRQDGSQGICETTI-VALQDDQGQSMATISV 670

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
             +  + +  +  +     +  + +  +     I + +G I+  +    + F  P ++++
Sbjct: 671 NRDITERKHAELLLRRSEERFQAFMNHSPTPAWITDIDGTIVYVSETYRRTFQLPTQELI 730

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR-IIIKKLPFSS 552
            K                 +  +          +    S    +   +    I   P   
Sbjct: 731 GKNIVDIYPPELTQTFRETIQIVARTRQVMETVESAPCSDGTGRDFLVYKFPISSKPDEC 790

Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAE 579
                  DI+E KQ +  L  +++  +
Sbjct: 791 LIGCIAIDITERKQAEAALRKSEERWQ 817



 Score =  134 bits (336), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 50/408 (12%), Positives = 113/408 (27%), Gaps = 28/408 (6%)

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS----- 241
                      +  + +   L E  +        K   F+   P     +   V+     
Sbjct: 300 IEKQTQVEIALRASETRLRELVETVRVIPWEFDLKTQHFTYVGPQVETLLAYPVAQWYEE 359

Query: 242 SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE-DFHTINLNQYTKKQYFGTLQNNSKESF 300
           +  + + H  D     ++    + +    E E      +      +     +Q +     
Sbjct: 360 NFWDNHLHTLDRDWAVRFCQEAANKGQNHELEYRMLAADGRVVWLRDVVNVVQVDGTPVM 419

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN----LFYANPSFLLLTKYKS 356
                    +     +E   L    +        +         + Y N +F  +T YK+
Sbjct: 420 -LRGFMFDITDLKRVEETLRLRERALAASSNGIVISDAKLPHYPVIYVNSAFEQITGYKA 478

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
            + +    G +        +  +AI+ +               L   + +          
Sbjct: 479 TEVV----GRNCRFLLGNDTQQSAIEELRSALKAGKNCKV--ILRNYRKDGSLFWNQ-LS 531

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476
                N   +     GI+ +  D +  +  +  +        E   DG+ I N +G IL 
Sbjct: 532 VSPIYNDNGQLSHFIGIQTDISDRQQAEASLRRQ----ALTFENIYDGVIITNLQGQILD 587

Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
            N A  ++FGY    I  +  +   + +  + +N  +  I  +  +           ++ 
Sbjct: 588 WNPAAERMFGYSKNHICGQSISTLHKVDEDAALNSAI--IAEITKQGRWSGEINFVRQDG 645

Query: 537 KLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAEK 580
                   I  L               DI+E K  +  L  +++  + 
Sbjct: 646 SQGICETTIVALQDDQGQSMATISVNRDITERKHAELLLRRSEERFQA 693



 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 50/519 (9%), Positives = 144/519 (27%), Gaps = 51/519 (9%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGKTTLWPIE 153
           +  ++    +  G  A +++G     +            +   LK           +  +
Sbjct: 463 VIYVNSAFEQITGYKATEVVGRNCRFLLGNDTQQSAIEELRSALKAGKNCKVILRNYRKD 522

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE---- 209
           G+       L+  PIY+ N + S F   GI           A  +R    F ++++    
Sbjct: 523 GSLF--WNQLSVSPIYNDNGQLSHF--IGIQTDISDRQQAEASLRRQALTFENIYDGVII 578

Query: 210 --IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
             ++            +F         +  + +  +       +D           +++ 
Sbjct: 579 TNLQGQILDWNPAAERMFGYSKNHICGQSISTLHKV------DEDAALNSAIIAEITKQG 632

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS----LSAYFDEGENLTP 323
               + +F   + +Q   +     LQ++  +S   +S     +            E    
Sbjct: 633 RWSGEINFVRQDGSQGICETTIVALQDDQGQSMATISVNRDITERKHAELLLRRSEERFQ 692

Query: 324 ETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
             ++  P P ++    G + Y + ++    +  + + I         +      +     
Sbjct: 693 AFMNHSPTPAWITDIDGTIVYVSETYRRTFQLPTQELIGKN------IVDIYPPELTQTF 746

Query: 383 PVMLYRSDRTCIAASARLHTIQWNR-ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
              +    RT             +       +   P       P+      I  +  + +
Sbjct: 747 RETIQIVARTRQVMETVESAPCSDGTGRDFLVYKFPISSK---PDECLIGCIAIDITERK 803

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS-KLFGYPVEDILRKPFTVF 500
             +  +     +   ++E   D I     +  I++ N       +   +++   +P    
Sbjct: 804 QAEAALRKSEERWQLVIEGNQDAIW----DWNIIT-NETFRSARWAELIKEQNYQPIADH 858

Query: 501 ------LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC- 553
                 +  +    +     + LS  +   +         ++    + +           
Sbjct: 859 ADCVSRIHPDDYERVMAVKQDCLSRKIPNYV-VEYRLRCNDDSYRWVLVHATGQWDEQGN 917

Query: 554 ---YSLTMHDISEWKQEKNKLSH--AKKIAEKESSHKSD 587
                 ++ DI+E  + +  L     + +  ++ + K  
Sbjct: 918 PVRMVGSIKDITERIEAQEALQRQLHRTLLLEKITQKIR 956


>gi|290511586|ref|ZP_06550955.1| two-component system, OmpR family, aerobic respiration control
           sensor histidine kinase ArcB [Klebsiella sp. 1_1_55]
 gi|289776579|gb|EFD84578.1| two-component system, OmpR family, aerobic respiration control
           sensor histidine kinase ArcB [Klebsiella sp. 1_1_55]
          Length = 784

 Score =  320 bits (821), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 86/435 (19%), Positives = 178/435 (40%), Gaps = 16/435 (3%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L            +L  +Q     +     I   +  +         ++ E
Sbjct: 86  EESRQRLSRLVDKLEEMRERDLKL-NVQLKDNIAQLNQEIGEREKAEAERETTLEQLKIE 144

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             +    + ++E +   L S L+A+ D +   N +      NRA+  L G   + ++   
Sbjct: 145 MKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLIHLK 204

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCY 554
                 +     +     ++   ++  T E+        +    +R +    ++      
Sbjct: 205 PQDVYSEEAAEKVLETDEKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRRGL 264

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+        +   E+ S  K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 265 MGFGRDITERKR-------YQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE 317

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     +Y   I  S   + +I ND++D+ K+E  K+ L  +PV     +++  +L
Sbjct: 318 LTS----EQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENL 373

Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
             L A +K +      +  +P  ++ D   ++QI  N++SNA+ FTP GG + +   +  
Sbjct: 374 SGLQAQQKGLRFVLEPSLPLPHKVITDGTRLRQILWNLISNAVKFTPQGGGVNVRVRYDE 433

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMGKF 792
            + +   V D+G+G+   E +K    + Q+ +S   +   GTG+GL +++ +     G  
Sbjct: 434 GDILHFEVEDSGIGIPEAEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLARNMGGDI 493

Query: 793 YIFSTPAKGTLIEII 807
            + S P KG    + 
Sbjct: 494 SVTSQPGKGATFTLT 508



 Score = 44.6 bits (104), Expect = 0.077,   Method: Composition-based stats.
 Identities = 15/161 (9%), Positives = 38/161 (23%), Gaps = 8/161 (4%)

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIE 361
           +  +         ++  +     +D  P   F  +        N +  LLT       I 
Sbjct: 143 IEMKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLI- 201

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                  L      S+  A K +           +      + +                
Sbjct: 202 ------HLKPQDVYSEEAAEKVLETDEKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYY 255

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
           ++  +     G   +  + +  +  +E       + +   S
Sbjct: 256 DRVGKRRGLMGFGRDITERKRYQDALERASRDKTTFISTIS 296


>gi|119509031|ref|ZP_01628182.1| two-component hybrid sensor and regulator [Nodularia spumigena
            CCY9414]
 gi|119466197|gb|EAW47083.1| two-component hybrid sensor and regulator [Nodularia spumigena
            CCY9414]
          Length = 1045

 Score =  320 bits (821), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 99/559 (17%), Positives = 201/559 (35%), Gaps = 21/559 (3%)

Query: 260  PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
                 E     + E        +   +    T +         L  +    +       +
Sbjct: 501  EQAQQEIKERTQAEAALQKLNEELEIRVVERTAELQHSNQNLLLEIQERQRVDQELRHSQ 560

Query: 320  NLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
                  ++        + + G +  AN ++L +        I      ++         N
Sbjct: 561  QRLHNILNSLFSFVGVISTEGIIIEANEAWLKIFSLTDSSVIGKPFAQTSWWSYSAKIQN 620

Query: 379  NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
                 +    +    I        +++  E  + + F      ++  E         +  
Sbjct: 621  KIQSAISQA-AQGNSIRYDI---PVRFTEEKFITIDFSIKPVFDESGEVSYLVVSGIDIT 676

Query: 439  DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE-DILRKPF 497
            + +  +  M     QL +I E+T DGIAI+  +   L  N+A  +LFGY  + +++ K +
Sbjct: 677  ERKQAEDTM---KKQLAAI-ESTIDGIAILQGD-RYLYLNKAHVELFGYDTDKELIGKTW 731

Query: 498  TVFLEQ-NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556
                               ++            +   ++       I +  +        
Sbjct: 732  RELYTPAEIARFERDVFPILIEKGH---WGGEAIAQRRDGSTFDEEISLT-MTNDGELIC 787

Query: 557  TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
               DIS+ K  + ++    +  ++ +  KS F++  SHE RTPL  I   +  I  +   
Sbjct: 788  VCRDISKRKLAQQEIYKILEREKELNQLKSRFISMTSHEFRTPLAVISSSA-GILKEFSQ 846

Query: 617  PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
             L   +  ++   I         +++++L ISK E+GK+    +P+ L E   +  S +Q
Sbjct: 847  KLDEEKKQKHLECIITYVKHTTQLLDEILLISKAEAGKLAFEPKPLDLVEFCQKLTSEMQ 906

Query: 677  LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
            L      I+  ++    +  ++ D + ++QI +N+LSNA+ ++     +      T    
Sbjct: 907  LSTQNNTIIFSSNTKTEVIALV-DKKLLRQILINLLSNAVKYSQHNSSVKFDLQITEQ-S 964

Query: 737  VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
            +I  + D G+G+   +  +  + F +  N       GTGLGL + K  VD + GK  + S
Sbjct: 965  IIFSIEDQGIGIPQADKTQLFEAFHRATNVGS--ISGTGLGLTIVKNCVDLHGGKVTVVS 1022

Query: 797  TPAKGTLIEIIFPLYDTSH 815
                GT   +I PL   S+
Sbjct: 1023 QEGIGTKFTVIIPLQSVSY 1041



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/134 (10%), Positives = 41/134 (30%), Gaps = 11/134 (8%)

Query: 94  YLKEISEELPKTIGNYAF-KMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWP 151
               +++   +  G     ++IG    ++     I      +  +L  +  W G+     
Sbjct: 706 RYLYLNKAHVELFGYDTDKELIGKTWRELYTPAEIARFERDVFPILIEKGHWGGEAIAQR 765

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
            +G+     I L        + E        +          +    ++ ++   L+++K
Sbjct: 766 RDGSTFDEEISLTMTN----DGEL-----ICVCRDISKRKLAQQEIYKILEREKELNQLK 816

Query: 212 KGHSSVEKEKYDIF 225
               S+   ++   
Sbjct: 817 SRFISMTSHEFRTP 830



 Score = 46.6 bits (109), Expect = 0.017,   Method: Composition-based stats.
 Identities = 27/212 (12%), Positives = 52/212 (24%), Gaps = 19/212 (8%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKRQNTW 143
           F   I   G + E +E   K        +IG                N I   + +    
Sbjct: 573 FVGVISTEGIIIEANEAWLKIFSLTDSSVIGKPFAQTSWWSYSAKIQNKIQSAISQAAQG 632

Query: 144 YGKTTLWPIEGTNL-YVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
                  P+  T   ++ ID +  P++  + E S     GI              K+   
Sbjct: 633 NSIRYDIPVRFTEEKFITIDFSIKPVFDESGEVSYLVVSGI--DITERKQAEDTMKKQLA 690

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
                 +                        L            Y    +++      L 
Sbjct: 691 AIESTIDGIAILQ-----GDRYLYLNKAHVEL----------FGYDTDKELIGKTWRELY 735

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294
           T  E +  E++ F  +    +   +     ++
Sbjct: 736 TPAEIARFERDVFPILIEKGHWGGEAIAQRRD 767


>gi|229087950|ref|ZP_04220060.1| hypothetical protein bcere0022_45040 [Bacillus cereus Rock3-44]
 gi|228695363|gb|EEL48238.1| hypothetical protein bcere0022_45040 [Bacillus cereus Rock3-44]
          Length = 609

 Score =  320 bits (821), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 84/371 (22%), Positives = 159/371 (42%), Gaps = 23/371 (6%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +  +   E E  +L S+L   +DG+   +R+G I+  N    K+     E  L +     
Sbjct: 255 QQARSSTESERRKLSSVLSHMTDGVIATDRKGDIILLNDPAEKMLNVSRETALDQSVLEV 314

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
           L       ++H   E  S+ L  +                  +I K+   ++     ++D
Sbjct: 315 LGIQEEFTLDHLYEEPDSVLLDFSTRNEPYILRAS-----FSVIQKETGKANGLIAVLYD 369

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           ++E ++                  + +F+A VSHE+RTPLT +  + E + +  +     
Sbjct: 370 VTEQERI--------------DRERREFVANVSHELRTPLTTMRSYLEALSDGAWQDPNI 415

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
                +          ++ +VN LL +SK++S +  L  E V   +  +  I   +  + 
Sbjct: 416 APQ--FLTVTQEETERMIRLVNALLQLSKLDSTEHRLMKEWVDFTDFFNNVIDRFE-MSK 472

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
           E+ ++ + SF+     I  D   + Q+  NI+SNA+ ++P GG +        +  + + 
Sbjct: 473 EQNVIFKRSFSKKSRFIDMDGDKITQVLYNIISNALKYSPEGGTVTYRLRDRED-MLEIS 531

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V D G+G+    +EK  + F ++  ++  +  GTGLGL +AK M+ A+ G  +  S   K
Sbjct: 532 VSDQGMGIPKENVEKIFERFYRVDKARSRQMGGTGLGLAIAKEMIVAHGGSIWAKSEEGK 591

Query: 801 GTLIEIIFPLY 811
           GT I    P+ 
Sbjct: 592 GTTIYFTLPMA 602


>gi|115373795|ref|ZP_01461088.1| hybrid sensor [Stigmatella aurantiaca DW4/3-1]
 gi|310817545|ref|YP_003949903.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|115369194|gb|EAU68136.1| hybrid sensor [Stigmatella aurantiaca DW4/3-1]
 gi|309390617|gb|ADO68076.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 976

 Score =  320 bits (821), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 105/816 (12%), Positives = 237/816 (29%), Gaps = 117/816 (14%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI-GDLLKRQNTWY 144
            + +D  G    ++       G    + +G    D       + +  +  ++LK+     
Sbjct: 37  VFQLDTQGVWTFLNPAWTALTGYRPEESVGHSFLDSVHPKDREAHQQLFQEVLKQPPARQ 96

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
                +          +++ A P+   +    G    G +              + ++  
Sbjct: 97  RFEGRYLSRDGGER-WVEMVARPLRGEDGSVQGL--CGTLTDVSERRRTHDALSQRERYL 153

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH--------------- 249
             L E+++     ++ +        P       ++V     +                  
Sbjct: 154 GALVEMQQRLLVAQQGEESYKGVLGPIGQATGASRVYVFILHRDEAGKVLVSQRAEWCAP 213

Query: 250 ----------------------------KDDVLKTEKYPLLTSEESSLPEQEDFHTINLN 281
                                       + + +      L  +E + L +Q+    + L 
Sbjct: 214 GISPEIDNPSLQNLPMEPAFSRWVEQLSRGEKIAALVKDLPDAERALLEQQDVKSVLVLP 273

Query: 282 QY----------------TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
                              +      +   S  +        H    +   E E    + 
Sbjct: 274 LRVNDVLAGFIGFDNCVEARPWAQLEVDLLSAAAGAISLELEHRQFESALRERETRYRQL 333

Query: 326 VDKCPIPFFVYSHGN---LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
            +      + Y   N     + +        Y   +           +    L       
Sbjct: 334 AENASDIQYRYRLENPRSFLFVSRVVSDRLGYSPEEHYADPELWHKRIHPGDLP------ 387

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
            +         ++    +         +  +        N     +   GI  +  D R 
Sbjct: 388 ALTQLLESPQSVSNKPVVLRFTCRDGRTRWLEHTVAPVLNGNGRPVSVEGIARDITDRRE 447

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            +  +++       +LE  +D  A I R+G I+  N A+    G+   D L     +   
Sbjct: 448 VEEALKMSEASFRILLEGVTDA-AAIQRDGRIVYANMALVTTLGFDRPDQLVGRALMRFV 506

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
           ++    +     +   +    T E+  +    + ++  L  +      +        D++
Sbjct: 507 EDDLEEVPGPPPDPSGIKGMITGERRLVRRDGKTRVAELVSLPLLFDGAPAVVSIARDVT 566

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ--------- 613
           E +Q + +L+ A ++A   +       A ++HEI  PL  +I     +  +         
Sbjct: 567 EQRQLQARLTLADRLASVGT-----LAAGIAHEINNPLAFVISNLSFLSEEMRRSQLSLE 621

Query: 614 ----------------RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
                           +   L    + E  +        V  IV  L   S+ +  +++ 
Sbjct: 622 GSQSSNAASGTGPKLRQRAELDLAEWQEVLSEAYEGAERVRQIVRQLKTFSRPDEERLS- 680

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
              PV + + +   + +        R  +   +A ++P ++A+   + Q+ LN++ NA  
Sbjct: 681 ---PVDIHQVLDSVVMMAANEI-RHRAQLHRDYA-SVPMVMANEGRLCQVFLNLVVNAAQ 735

Query: 718 FTPSG----GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
             P G      I + T       V++ V+D+G G+    L +   PF          G G
Sbjct: 736 AIPEGDAQRHSIRLVTRRLDPGRVLIEVQDSGSGIPREALGRIFDPFFTTKP----VGVG 791

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           TGLGL +   ++    G+    S   KG+   +I P
Sbjct: 792 TGLGLSICHGIITNLGGEISADSEMGKGSTFRVILP 827



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 19/139 (13%), Positives = 48/139 (34%), Gaps = 5/139 (3%)

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
             I+++  + +  ++ +G+    N A + L GY  E+ +   F   +             
Sbjct: 27  RQIIDSLDEVVFQLDTQGVWTFLNPAWTALTGYRPEESVGHSFLDSVHPKDREAHQQLFQ 86

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNK 570
           E+L               +++     + ++ + L            T+ D+SE ++  + 
Sbjct: 87  EVLKQ-PPARQRFEGRYLSRDGGERWVEMVARPLRGEDGSVQGLCGTLTDVSERRRTHDA 145

Query: 571 LSHAKKIAEKESSHKSDFL 589
           LS  ++        +   L
Sbjct: 146 LSQRERYLGALVEMQQRLL 164


>gi|254489970|ref|ZP_05103165.1| hypothetical protein MDMS009_301 [Methylophaga thiooxidans DMS010]
 gi|224465055|gb|EEF81309.1| hypothetical protein MDMS009_301 [Methylophaga thiooxydans DMS010]
          Length = 1177

 Score =  320 bits (821), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 106/383 (27%), Positives = 179/383 (46%), Gaps = 35/383 (9%)

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
             +++E + D I  ++ EG I   N A   +   P  DI  +     L+ +  +++   +
Sbjct: 369 YSALIEGSKDAILTLSTEGKIQDWNEATYHVLKLPPFDITDRQLEDILDSDERALLTENI 428

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEW----K 565
              L+     TL+      T    LL+L + +  +          S  + DI+E     K
Sbjct: 429 AACLAGKSTATLDIDYH--TSNGDLLALSVSLSPIHKDKQTIIGASTIIRDITEQILDKK 486

Query: 566 QEK--------------NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
           Q +               +L  AK  A + S+ KS F+A VSHEIRTPL  I+G   ++K
Sbjct: 487 QLENLNSSLEEQVRTRTEELEKAKNEAIEASNMKSGFVANVSHEIRTPLNGILGMHNLLK 546

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
            +      N +   Y     +S   +L ++ND+LD+SKIE+GK+ +   P++L ++ S+A
Sbjct: 547 RENL----NEKQESYLQMATQSAKSLLMLINDILDLSKIEAGKLEIESLPINLIDSFSQA 602

Query: 672 ISLVQLYANEKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
            + + + A +K + I    A+     ++ D   ++QI  N++SNAI FT  G +II+S  
Sbjct: 603 ANSMAVRAMDKNVEIVLDLADIKHTVVIGDDLRIRQILNNLISNAIKFTDKG-EIIVSAA 661

Query: 731 HTSN---EEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
            T +     VIL   V+DTGVG+   +L +  K F Q  +S   +  GTGLGL +   + 
Sbjct: 662 TTEDVAGARVILDVSVQDTGVGIDKAKLNQLFKAFSQEDSSTTRKYGGTGLGLSIVSNLC 721

Query: 786 DANMGKFYIFSTPAKGTLIEIIF 808
               G+ ++ S    G+      
Sbjct: 722 SLMNGECHVESEKNVGSTFSFRL 744


>gi|187478370|ref|YP_786394.1| virulence sensor protein [Bordetella avium 197N]
 gi|115422956|emb|CAJ49485.1| virulence sensor protein [Bordetella avium 197N]
          Length = 1219

 Score =  320 bits (821), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 109/596 (18%), Positives = 220/596 (36%), Gaps = 40/596 (6%)

Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
           E          +         E +L     + T       ++       N         S
Sbjct: 360 ESALKDGTAEMSAGLFWSEEREDTLDFSSPYLTTAFVLVGRRDTAHLPANTDLAGMRIAS 419

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364
             + P L A            V           +G + YA       T+  +   +    
Sbjct: 420 ISSSPVLEALRKHYPQSEIVLVGSPNEALLAVLNGKVDYAVQ-----TQIGANFYLSNYF 474

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
                +     +    +        D         + ++  + +  L   +      +  
Sbjct: 475 RNELAIATALNTPPVRLAFAFSRDQDELRGIIDKAITSLPADDQIYLLNRWRMETAPDIN 534

Query: 425 PENMPQNGI---------------------EPEDVDTRINKRKMEIEVMQLCSILEATSD 463
                +  I                       +    R+ +R +  ++  +  +++   +
Sbjct: 535 TWYAYRGEIYLLIGAGIISALIFLAWIYYLRRQIGKRRVAERALSDQLAFMRVLIDGIPN 594

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV----FLEQNTPSVMNHYLTEILSL 519
            + + +REG +++ NR+  + F    + +  +          +      ++    + +  
Sbjct: 595 PVFVRDREGRMVTCNRSYLETFDVTRDAVQGRTLIDSPIGLEDPEQAKTVHQQYLDAMQH 654

Query: 520 DLRQTLEKITLGSTKEEKLL--SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI 577
           +     + I +    E++ +   L      L           D++E  +    L  AK+ 
Sbjct: 655 NSGAVFQDIEVTLHGEKRYIYHWLLPYSDSLGRVKGLIGGWTDLTERIRLLRDLHEAKEE 714

Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
           A+  +  KS FLA +SHEIRTP+ AIIG  E+   +   P               S   +
Sbjct: 715 ADAANRAKSTFLATMSHEIRTPMNAIIGMLEL---ELRRPADQATDRSALQITYDSARSL 771

Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPR 696
           LD++ D+LDISKIE+ ++ L   P  L + +   I++ Q  A +  + +       + P 
Sbjct: 772 LDLIGDILDISKIEADRLELSPHPTDLRKLLDGIINVFQGLARQHGLSLTLQIDPPHPPH 831

Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQII---ISTTHTSNEEVILRVRDTGVGMTNYEL 753
           +L D   +KQ+  N++SNA+ FT  GG I+   + T      ++ L V D+G G+++ + 
Sbjct: 832 VLLDATRLKQVISNLVSNALKFTEVGGVIVSLKVRTEEDGRAKIELAVDDSGPGISSADR 891

Query: 754 EKAMKPFGQI-PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           ++  +PF Q+   ++  R  GTGLGL +++ +++A  G F + S P KGT I+++ 
Sbjct: 892 QRLFEPFTQVHDQAKAARAAGTGLGLVISRRLIEAMGGHFDLSSIPGKGTRIDVLL 947



 Score = 38.1 bits (87), Expect = 5.8,   Method: Composition-based stats.
 Identities = 42/432 (9%), Positives = 97/432 (22%), Gaps = 51/432 (11%)

Query: 90   DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG------DLLK--RQN 141
            D  G +   +    +T       + G  L D S I   DP           D ++     
Sbjct: 600  DREGRMVTCNRSYLETFDVTRDAVQGRTLID-SPIGLEDPEQAKTVHQQYLDAMQHNSGA 658

Query: 142  TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI-----VHVNRVD-NDPRA 195
             +         E   +Y  +    LP         G  G        + + R        
Sbjct: 659  VFQDIEVTLHGEKRYIYHWL----LPYSDSLGRVKGLIGGWTDLTERIRLLRDLHEAKEE 714

Query: 196  LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255
                   K + L  +     +       +   +   P  +  ++ +    Y + +  +  
Sbjct: 715  ADAANRAKSTFLATMSHEIRTPMNAIIGMLELELRRPADQATDRSALQITYDSARSLLDL 774

Query: 256  TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
                  ++  E+     E        +          Q  +++    L+ +  P    + 
Sbjct: 775  IGDILDISKIEADR--LELSPHPTDLRKLLDGIINVFQGLARQHGLSLTLQIDPPHPPHV 832

Query: 316  DEGENLTPETVDKCPI---------PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
                    + +                 V           + + L    S       G  
Sbjct: 833  LLDATRLKQVISNLVSNALKFTEVGGVIVSLKVRTEEDGRAKIELAVDDS-----GPGIS 887

Query: 367  STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
            S                    R+  T +        I+    +                +
Sbjct: 888  SADRQRLFEPFTQVHDQAKAARAAGTGLGLVISRRLIEAMGGHF---DLSSIPGKGTRID 944

Query: 427  NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE--GIILSTNRAVSKL 484
             +    I     +T   + +      +L          + +I+      +L   +     
Sbjct: 945  VLLNADITTAVEETASPETEPATTPARLN---------VLVIDDHPPNRLLMCQQLA--F 993

Query: 485  FGYPVEDILRKP 496
             G+  ++    P
Sbjct: 994  IGHDAQEAADGP 1005


>gi|283836244|ref|ZP_06355985.1| sensor histidine kinase/response regulator [Citrobacter youngae
           ATCC 29220]
 gi|291067608|gb|EFE05717.1| sensor histidine kinase/response regulator [Citrobacter youngae
           ATCC 29220]
          Length = 778

 Score =  320 bits (821), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 86/435 (19%), Positives = 177/435 (40%), Gaps = 17/435 (3%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L +          +L  +Q     +     I   +  +         ++ E
Sbjct: 81  EESRQRLSRLVQKLEEMRERDLKL-NVQLKDNIAQLNQEIVEREKAEAERQETFEQLKVE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             +    + ++E +   L S L+A+ D +   N +      NRA+  L G   + ++   
Sbjct: 140 INEREEAQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVNLK 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCY 554
                       +     ++   ++  T E+        +    +R +    ++      
Sbjct: 200 PADVYSPEAAEKVIETDEKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGL 259

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+        +   E+ S  K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 260 MGFGRDITERKR-------YQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTD 312

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     +Y   I  S   + +I ND++D+ K+E  K+ L  +PV     +++  +L
Sbjct: 313 LTA----EQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFMADLENL 368

Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
             L A +K +         +P  ++ D   ++QI  N++SNA+ FTP G Q+ +   +  
Sbjct: 369 SGLQAQQKGLRFVLEPTLPLPHKVITDGTRLRQILWNLISNAVKFTPQG-QVTVRARYDQ 427

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMGKF 792
              +   V D+G+G+   E +K    + Q+ +S   +   GTG+GL ++K +     G  
Sbjct: 428 GNMLHFEVEDSGIGIPQDEQDKIFAMYYQVKDSNGGKPATGTGIGLAVSKRLAKNMGGDI 487

Query: 793 YIFSTPAKGTLIEII 807
            + S   KG++  + 
Sbjct: 488 TVSSQAGKGSIFTLT 502


>gi|160888865|ref|ZP_02069868.1| hypothetical protein BACUNI_01285 [Bacteroides uniformis ATCC 8492]
 gi|156861764|gb|EDO55195.1| hypothetical protein BACUNI_01285 [Bacteroides uniformis ATCC 8492]
          Length = 623

 Score =  320 bits (821), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 112/527 (21%), Positives = 201/527 (38%), Gaps = 38/527 (7%)

Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSV 357
             E     +  S S    E   L        P+   +Y   G L   N     +   K  
Sbjct: 113 IAETQDGPDMSSASQALQERNRLLHNIYKYLPVGIELYNREGILIDMNDKEQEMFHLKQK 172

Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI-----QWNRENSLA 412
           +D+        + + P   +    K   L + +            I        +  ++ 
Sbjct: 173 EDLLGIN----IFENPIFPEEMKSK---LRKHENADFTFRYDFSKIDNYYKTQKKTGTID 225

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA---IIN 469
           +        +          I  +  +T +   K++        I +    G A   ++N
Sbjct: 226 LVTKVTSLYDDNHNLTNYLLINADKTETTVAYNKIQEFESHFELIDDYAKVGYANYDLLN 285

Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPF--TVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
            +G      R+  K  G   E  L +       L  +  ++M  +L  +    L   L +
Sbjct: 286 EQG---YAQRSWYKNLGEKTETPLSEIIGTYNHLHPDNRTIMLDFLQNVKR-GLAHKLSR 341

Query: 528 ITLGSTKEEKLLSLRIIIK-----KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES 582
                 ++   +   + I                  +DI++ K+ +  L  AK+ AE+  
Sbjct: 342 EVRVLKEDGSFMWTHVNIIVERYMPEQNIIEIICINYDITQLKKTEAMLIQAKEKAEEAD 401

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
             KS FLA +SHEIRTPL AIIGFS ++              +Y + I+ +  L+L ++N
Sbjct: 402 RLKSAFLANMSHEIRTPLNAIIGFSSLL----HYVENEQEREQYISLINHNNQLLLKLIN 457

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702
           D+LD+SKIE+G + LH E  +  E + E+I+  +       + +   +     +I  D  
Sbjct: 458 DVLDLSKIEAGHIELHSEWFNPAELIEESITEYERNVPA-GVKLFARYPAAPGQIEHDPM 516

Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
            +KQI  N +SNA+  T  G  I +     ++  + + V DTG G+   +L    + F +
Sbjct: 517 RIKQILNNFISNALKNTVQG-HIEVYYETDTDG-IRISVSDTGCGIPPDKLGMIFERFEK 574

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           + +      +G GLGL + K++V+   G   + ST   G+   +  P
Sbjct: 575 VDSF----AQGAGLGLSICKSIVEKMNGVITVDSTMGVGSTFTVELP 617


>gi|254853972|ref|ZP_05243320.1| histidine kinase [Listeria monocytogenes FSL R2-503]
 gi|300765001|ref|ZP_07074989.1| histidine kinase [Listeria monocytogenes FSL N1-017]
 gi|258607361|gb|EEW19969.1| histidine kinase [Listeria monocytogenes FSL R2-503]
 gi|300514301|gb|EFK41360.1| histidine kinase [Listeria monocytogenes FSL N1-017]
          Length = 591

 Score =  320 bits (821), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 82/367 (22%), Positives = 169/367 (46%), Gaps = 27/367 (7%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           +++    +L +I++    G+ +IN +  ++ TNR + ++ G    +I  KPF   ++   
Sbjct: 246 EIKQNEQRLNAIVQNLVSGVMLINVDKQVIMTNRTMYQILG--ETEITGKPFYEVIKSFA 303

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISE 563
            S +        + + +   +K  +     E +L   +              L +HDI++
Sbjct: 304 LSQLIEA-----TFETKTIQQKEIILYFPREMILDASVSPILGENGEITGIILLLHDITQ 358

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            +  +N               +S+F+  VSHE++TP+TA+ GF+E + +           
Sbjct: 359 IRHLENV--------------RSEFVTNVSHELKTPVTALKGFAETLLDGAM--YDEVLL 402

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            ++   I    + +  ++ D+L +S+IE   +  + E V +DE + ++   +   A EK 
Sbjct: 403 KKFLTIIKEESDRLHRLIMDILALSRIEQNPVAENVELVDIDEVIEQSARTIFEMATEKN 462

Query: 684 ILIRT-SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           I +      +    I  D   ++QI +N+LSNAI++TP  G++ +        EVI+ V 
Sbjct: 463 IRVTIPEKTSASVMIETDRDKLQQIIINLLSNAINYTPVDGKVEVKL-IEQEAEVIIEVT 521

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G+G+   ++++  + F ++  ++     GTGLGL + K +V+   G+  + S    G+
Sbjct: 522 DNGIGIPAKDIDRVFERFYRVDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGS 581

Query: 803 LIEIIFP 809
              +  P
Sbjct: 582 TFRVTLP 588


>gi|16329802|ref|NP_440530.1| sensory transduction histidine kinase [Synechocystis sp. PCC 6803]
 gi|1652287|dbj|BAA17210.1| sensory transduction histidine kinase [Synechocystis sp. PCC 6803]
          Length = 974

 Score =  320 bits (821), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 120/692 (17%), Positives = 241/692 (34%), Gaps = 89/692 (12%)

Query: 172 NREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231
           +R    F    I+ ++  D+      + +         +           + + S     
Sbjct: 308 SRWIDHFAKGLILAMDDTDDQRADFDQSMLALAKANLVV---PLFSGDRLWGVLSVHQCD 364

Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291
                ++         A    V   +   L  S+  S        +       +K Y   
Sbjct: 365 GPRVWESSDIEFALKIALNLGVALQQAELLTESQRRS----TALQSALGEVEAQKDYLAR 420

Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY--ANPSFL 349
           +    +     +        +         T + V          S   +     NP + 
Sbjct: 421 IAEEERALTRVIEG---IRQTLELQNIFRATSDEVRHL------LSCDRVLVYRFNPDWS 471

Query: 350 LLTKYKSVDDI--------------------EIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389
               ++SV  +                    E  GG     ++  + D         +  
Sbjct: 472 GEFIHESVAQMWEPLKDLQNNFPLWQDTYLQENEGGRYRNHESLAVGDVETAGFTDCHLD 531

Query: 390 DRTCIAASARLHTIQWNRENSL------------AMTFIPFEKANQFPENMPQNGIEPED 437
           +       A L    +  E                         +Q    +     + + 
Sbjct: 532 NLRRFEIRAFLTVPVFVGEQLWGLLGAYQNGAPRHWQAREIHLLHQIANQLGVAVYQAQL 591

Query: 438 VDTRINKRK-MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
           +     + K ME  +  L +I++  +DG+ +I+  G I   N A+  +F     ++L   
Sbjct: 592 LARFQEQSKTMENTLADLTAIVDNLADGLLVIDLFGRITRYNPALLAMFDLEGLELLGAG 651

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK----LPFSS 552
              +  +     +N  L +    + +     + L   ++ + L   I   +     P   
Sbjct: 652 VDAYFPE----TLNQLLAKPEREEQKLVTADVELSQGRQGQALITSITSHENGCEYPQCL 707

Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
              + + D++  ++ +                K+DFLA VSHE+RTPLT+I+GF+ VI++
Sbjct: 708 GAVIMIRDVTHEREVE--------------RMKTDFLATVSHELRTPLTSILGFATVIQD 753

Query: 613 -------------QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
                        Q        R +     I+     +  ++ND+LDI+K+E+G+ +   
Sbjct: 754 KLNRVIIPELDLAQPHLGKATERVMRNLAIIESEAQRLTVLINDVLDIAKMEAGQESWQE 813

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719
           +P ++   +  AI+ +   A +K I ++      +P  + D   + Q+ LN+LSNA+ FT
Sbjct: 814 QPCAIGPIIERAIATITPQAQKKNISLQGDLEPGLPDFIGDENRILQVVLNLLSNAVKFT 873

Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ-QIRGEGTGLGL 778
           P G  +I + +H     + + + D G G+   + EK  +PF Q        + +GTGLGL
Sbjct: 874 PKG--LITARSHFHQNYLWVEIIDHGPGIHPADQEKIFEPFQQGGGDVLTDKPQGTGLGL 931

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           P+ K +V+ + G   + S+  +G+      P+
Sbjct: 932 PICKKIVEHHGGTIGVNSSLGRGSTFYFSLPV 963


>gi|226357431|ref|YP_002787170.1| histidine kinase [Deinococcus deserti VCD115]
 gi|226319421|gb|ACO47416.1| putative histidine kinase, classic [Deinococcus deserti VCD115]
          Length = 932

 Score =  320 bits (821), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 110/798 (13%), Positives = 255/798 (31%), Gaps = 93/798 (11%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKR-QNTWY 144
            +D  G   E++  + + +G    ++ G+   DVS    +  +       L+     T+ 
Sbjct: 155 RVDIEGRWLEVNPAIERFLGYSEAELRGLTFRDVSHPDDLSQHNVGLFSRLVNGEGGTFT 214

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRG-FGIVHVNRVDNDPRALGKRLDKK 203
            +      +G  ++  + ++  P+       +G+R    ++H            +RL + 
Sbjct: 215 LEKRYIRKDGVVVWGSVTVS--PVVDP---VTGYRSTVAVIHDITDRKRAEEYTERLHRV 269

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM-----KNKVSSLTEYYAHKDDVLKTEK 258
            + L       + ++    ++           +     ++ + +L      ++   +  +
Sbjct: 270 TADLARALTPEAVLDVTLAEVMPAMGAAAGGALLIDDSEDYLEALGHAGYSEEMERRFSR 329

Query: 259 YPLLTSEE-------------SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
            PL  S               +S    E +  +   +   +   G       +    L  
Sbjct: 330 VPLTMSLPVTDTARTGEPYFLTSQELLERYPHLAGQREQFRSGAGLPLRVGDQITGVLVL 389

Query: 306 R--------------------------NHPSLSAYFDEGENLTPETVDKCPIPFFVYS-H 338
                                          L              V+      +  S  
Sbjct: 390 SFSDDRLFSGADQTFMTSVADQCAQAIERARLYEVSRISVQRYRSLVETTSRIVWTRSPE 449

Query: 339 GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398
           G   +  P +   T  +S + +   G L  +                   S  T      
Sbjct: 450 GTFDHDQPQWTAFTGQRSPELL-GMGWLDAVHPED---RARTADSWQNAVSSGTPYETKY 505

Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458
           RL   +        M        +         G+  +  +    +  +     +L   L
Sbjct: 506 RL---RRADGMFRHMHVRAIPLRDDDGTLREWIGVHTDITERLEAELALRESQGRLRFAL 562

Query: 459 EATSDG---IAIINREGIILSTNRAVSKLFGYP--VEDILRKPFTVFLEQNTPSVMNHYL 513
           EA   G   +++ +        +    ++FGYP        + F   +       +N   
Sbjct: 563 EAAQLGDWEMSLHDHSFR---QSPRHDEIFGYPQGRPHWTYETFLEHVLPEDREDVNRKF 619

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKL 571
           T  +  +    +E     +  E + +  R   +K P          + DI+  K+ + ++
Sbjct: 620 TWAMEQEEAWDIECRIRRADGEVRWIWTRGQAQKQPHGRARHMLGIVGDITVLKRAEAEV 679

Query: 572 SHAK-----------KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
                          +  E+ +     F    SH+++ PL  +  ++E++  +  G L +
Sbjct: 680 RALNVTLEQRVRERTQELERSNRDLEQFAYVASHDLQEPLRTVTSYTELLARRYGGQL-D 738

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
            +  +Y  +   +   +  +V DLLD S++ +    +    +  +E +   I  ++    
Sbjct: 739 EKAEKYMTFTVAAARRMGQLVQDLLDFSRVRAENHQVSR--LDPNEVMVTLIRDLEETIE 796

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-SNEEVIL 739
                +      N+P + AD    +Q+  N++ N + F   G    +  +     +    
Sbjct: 797 ANGAAVSWD---NLPAVHADAVQFRQLLQNLIGNGLKFHRDGVAPAVHVSARIEGQSAHF 853

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
           +V+D G+G+     ++    F ++    + R +GTG+GL L K +V+ + G+ ++ S P 
Sbjct: 854 QVQDNGIGIERQYFDRIFAVFQRLH--TRDRYQGTGVGLALCKRIVERHGGQIWLDSVPG 911

Query: 800 KGTLIEII--FPLYDTSH 815
           +GT        PL +T  
Sbjct: 912 EGTTFHFTLQLPLTETEA 929



 Score =  118 bits (295), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 35/257 (13%), Positives = 78/257 (30%), Gaps = 10/257 (3%)

Query: 335 VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM-LYRSDRTC 393
           +  HG +   NP+      Y   + +  A  ++ L+  P     +       L       
Sbjct: 27  IDQHGRVIEWNPAAERTFGYTRQEALGQA--MNELIIPPAFQAAHQHGMARYLETGLAKV 84

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
           +    RL   + + E              Q            +  +    +  +      
Sbjct: 85  LYQRLRLEAQRRDGE---IFPCELVIHEVQIQGARSFIASLRDLTEQVRAETALRKREAD 141

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
             +++E T+ G+A ++ EG  L  N A+ +  GY   ++    F      +  S  N  L
Sbjct: 142 HRTLIENTAVGVARVDIEGRWLEVNPAIERFLGYSEAELRGLTFRDVSHPDDLSQHNVGL 201

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKN 569
              L      T         K+  ++   + +  +             +HDI++ K+ + 
Sbjct: 202 FSRLVNGEGGTFTLEKRYIRKDGVVVWGSVTVSPVVDPVTGYRSTVAVIHDITDRKRAEE 261

Query: 570 KLSHAKKIAEKESSHKS 586
                 ++    +   +
Sbjct: 262 YTERLHRVTADLARALT 278



 Score =  108 bits (269), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 48/543 (8%), Positives = 128/543 (23%), Gaps = 52/543 (9%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNTWYGK 146
           ID HG + E +    +T G    + +G  + ++         +   +   L+       K
Sbjct: 27  IDQHGRVIEWNPAAERTFGYTRQEALGQAMNELIIPPAFQAAHQHGMARYLETGLA---K 83

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF-GIVHVNRVDNDPRALGKRLDKKFS 205
                +         ++    +     +  G R F   +             ++ +    
Sbjct: 84  VLYQRLRLEAQRRDGEIFPCELVIHEVQIQGARSFIASLRDLTEQVRAETALRKREADHR 143

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPP--PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
            L E      +    +                 + ++  LT       D L      L +
Sbjct: 144 TLIENTAVGVARVDIEGRWLEVNPAIERFLGYSEAELRGLTFRDVSHPDDLSQHNVGLFS 203

Query: 264 ----SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
                E  +   ++ +   +            + +        ++  +  +     +E  
Sbjct: 204 RLVNGEGGTFTLEKRYIRKDGVVVWGSVTVSPVVDPVTGYRSTVAVIHDITDRKRAEEYT 263

Query: 320 NLTPE------------------TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKS-VDDI 360
                                    +  P          L   +  +L    +    +++
Sbjct: 264 ERLHRVTADLARALTPEAVLDVTLAEVMPAMGAAAGGALLIDDSEDYLEALGHAGYSEEM 323

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA-----------SARLHTIQWNREN 409
           E       L  +  ++D           S                  S     ++   + 
Sbjct: 324 ERRFSRVPLTMSLPVTDTARTGEPYFLTSQELLERYPHLAGQREQFRSGAGLPLRVGDQI 383

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM----EIEVMQLCSILEATSDGI 465
           +  +     +       +        +     I + ++     I V +  S++E TS  +
Sbjct: 384 TGVLVLSFSDDRLFSGADQTFMTSVADQCAQAIERARLYEVSRISVQRYRSLVETTSRIV 443

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
              + EG         +   G    ++L   +   +     +         +S       
Sbjct: 444 WTRSPEGTFDHDQPQWTAFTGQRSPELLGMGWLDAVHPEDRARTADSWQNAVSSGTP--Y 501

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKE 581
           E        +     + +    L         +     DI+E  + +  L  ++      
Sbjct: 502 ETKYRLRRADGMFRHMHVRAIPLRDDDGTLREWIGVHTDITERLEAELALRESQGRLRFA 561

Query: 582 SSH 584
              
Sbjct: 562 LEA 564



 Score = 78.5 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 32/396 (8%), Positives = 89/396 (22%), Gaps = 26/396 (6%)

Query: 82  TVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH-IDPNNHIGDLLKRQ 140
           T R  W     G       +     G  + +++GM   D           +   + +   
Sbjct: 439 TSRIVWTRSPEGTFDHDQPQWTAFTGQRSPELLGMGWLDAVHPEDRARTADSWQNAVSSG 498

Query: 141 NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
             +  K  L   +G   ++ +   A+P+   +         G+        +     +  
Sbjct: 499 TPYETKYRLRRADGMFRHMHVR--AIPLRDDDGTLR--EWIGVHTDITERLEAELALRES 554

Query: 201 DKKFSHLHEIKK------GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254
             +     E  +              +     +    P  R      +  E+   +D   
Sbjct: 555 QGRLRFALEAAQLGDWEMSLHDHSFRQSPRHDEIFGYPQGRPHWTYETFLEHVLPEDRED 614

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
              K+     +E +   +      +             +     +   L      ++   
Sbjct: 615 VNRKFTWAMEQEEAWDIECRIRRADGEVRWIWTRGQAQKQPHGRARHMLGIVGDITVLKR 674

Query: 315 FDEGENLTPETVDKCPIPFFVYSHGNLFYANP---SFLLLTKYKSVDDIEIAGGLSTLLD 371
            +        T+++            L  +N     F  +  +   + +      + LL 
Sbjct: 675 AEAEVRALNVTLEQR----VRERTQELERSNRDLEQFAYVASHDLQEPLRTVTSYTELLA 730

Query: 372 A------PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
                   + ++      V   R     +        ++        +            
Sbjct: 731 RRYGGQLDEKAEKYMTFTVAAARRMGQLVQDLLDFSRVRAENHQVSRLDPNEVMVTLIRD 790

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
                           +     +   +Q   +L+  
Sbjct: 791 LEETIEANGAAVSWDNLPAVHADA--VQFRQLLQNL 824



 Score = 74.3 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 18/128 (14%), Positives = 49/128 (38%), Gaps = 5/128 (3%)

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF-LEQNTPSVMNHYLTE 515
           +L    D    I++ G ++  N A  + FGY  ++ L +      +     +   H +  
Sbjct: 16  LLSVALDAFIGIDQHGRVIEWNPAAERTFGYTRQEALGQAMNELIIPPAFQAAHQHGMAR 75

Query: 516 ILSLDLRQTLEKITLG--STKEEKLLSLRIII--KKLPFSSCYSLTMHDISEWKQEKNKL 571
            L   L + L +        ++ ++    ++I   ++  +  +  ++ D++E  + +  L
Sbjct: 76  YLETGLAKVLYQRLRLEAQRRDGEIFPCELVIHEVQIQGARSFIASLRDLTEQVRAETAL 135

Query: 572 SHAKKIAE 579
              +    
Sbjct: 136 RKREADHR 143


>gi|92115685|ref|YP_575414.1| PAS/PAC sensor signal transduction histidine kinase [Nitrobacter
           hamburgensis X14]
 gi|91798579|gb|ABE60954.1| PAS/PAC sensor signal transduction histidine kinase [Nitrobacter
           hamburgensis X14]
          Length = 838

 Score =  320 bits (821), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 122/678 (17%), Positives = 237/678 (34%), Gaps = 45/678 (6%)

Query: 155 TNLYVPIDLAALPIYSRN----REFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
           T+    ++     I  +     R+  G R                               
Sbjct: 184 TSAGRTVEAMGRAIGGQAIVRIRDLGGLR-----RDLAETTLRHNSLLAETGMLRAFAAA 238

Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270
                    E  ++    +           +   +      D           ++ ++  
Sbjct: 239 APWPLWARGEDGNLNFANAAYARATEAASATDAIQRNLELLDSDDRIAMARALNDHAAFA 298

Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330
            +     I   +     +   L+     +   L      +LS   +   +    T+D+  
Sbjct: 299 ARLPV-VIGGERRMYDVH--ALRAAGGSAGIALDASETAALSQALERMADAHRRTLDQLS 355

Query: 331 IPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389
               V+     L + N S+  L              L         +D++ +  +   R 
Sbjct: 356 SGVAVFDGQRRLAFYNDSYRRLWD------------LDRAFLDGNPNDSSVLDRLRAARK 403

Query: 390 DRTCIAASA---RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
                   A   RLH      E +  + ++P  +A          G      D      +
Sbjct: 404 LPEQPDFRAWKARLHEAYRANEAAKDVWYLPDGRALSIVTTPNPEGGVTYLFDDVTESLE 463

Query: 447 MEIEVMQL----CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
           +     +L       L++ ++ +A+    G     N A ++++    E + ++P    +E
Sbjct: 464 LARRYDRLITVQRETLDSLTEAVAVFGSNGRAQLFNPAFARMWKLSPEALSQQPHIDTVE 523

Query: 503 QNTPSVMNHYLT----EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM 558
                + +              +            K+  +L    +           LT 
Sbjct: 524 GWCKPLFDDDDAWQTIRNAVTGIDNRSAVRLKLERKDGSVLDCMTMPLP---DGATMLTF 580

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
           HDI++ +  +  L       E     K DF+  VS+E+R+PLT IIGF+ ++ +   GPL
Sbjct: 581 HDITDSENVERALRERNDALETADQMKVDFVHHVSYELRSPLTTIIGFAHLMNDPGTGPL 640

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
              +  +Y +YI  S + +L + N++LD++ I++G M L   PV + + ++ A   +Q  
Sbjct: 641 T-EKQAQYIDYITSSTDALLALTNNILDLATIDAGAMTLELGPVDVRKTIAAATEGIQDR 699

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738
              +RI++      +I   + D R + Q+  N+L+NA  F+P G  I +S   T++  V 
Sbjct: 700 LTRERIVLEVDVDPDIGNFIGDERRIIQVLYNLLANAAGFSPQGAVIAVSARRTAH-SVS 758

Query: 739 LRVRDTGVGMTNYELEKAMKPFG-QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
             V D G G+     +K    F  +   S+     G GLGL L ++ V+ + G+ +   T
Sbjct: 759 FAVTDDGPGIPPEVKDKVFDWFESRANGSRHR---GAGLGLSLVRSFVELHGGRVHFDPT 815

Query: 798 PAKGTLIEIIFPLYDTSH 815
             +GT +   FPL  T+H
Sbjct: 816 VKRGTRVVCDFPLDQTAH 833


>gi|154250164|ref|YP_001410989.1| PAS/PAC sensor signal transduction histidine kinase
           [Fervidobacterium nodosum Rt17-B1]
 gi|154154100|gb|ABS61332.1| PAS/PAC sensor signal transduction histidine kinase
           [Fervidobacterium nodosum Rt17-B1]
          Length = 422

 Score =  320 bits (821), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 78/405 (19%), Positives = 168/405 (41%), Gaps = 28/405 (6%)

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
              L    I   +    P       +  +  +      + E E   + +IL   +D I I
Sbjct: 30  SRYLDKIAITIGEEVGTPPLYIYERLRKKIEELEKRIFESEKERRNIFTILNNITDPIII 89

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
           +  +G+I   N A   +       I  +     +       +     + L     Q+ + 
Sbjct: 90  VRGDGVITFANIAGRDI---TRPGIEGRKVYDVV---ENYFLLEMFEKALETGEIQSGD- 142

Query: 528 ITLGSTKEEKLLSLRIIIKK-LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
           + + +  E +    +++  K    S  Y + +HD ++ KQ                  + 
Sbjct: 143 VVMQTNGETRYYDAKVVPIKFDQESERYIIVLHDTTKEKQL--------------DKLRR 188

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
           +F++ VSHE+RTPLT+I G++E + +            ++   I+     +  ++NDLLD
Sbjct: 189 EFISNVSHELRTPLTSIHGYAEALLDDDLS--NKELVRKFLGVIESESARMTRLINDLLD 246

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706
           + K+ESG    +F  V++ + +   +++++  A +  + + T        +  D   + Q
Sbjct: 247 LEKLESGDAKFNFSDVNMCKVIERVVTILEPLAEDYGVELYTKCECKS-TVYGDFDRLVQ 305

Query: 707 IALNILSNAIHFT---PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
           + LN++ NA+ +T    +G + +    +   ++++  V+DTG G+     ++  + F ++
Sbjct: 306 LVLNLVDNAVKYTSIKETGEKKVFVKCYGKEDKLVFEVQDTGPGIPEDAQKRLFERFYRV 365

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
             ++  +  GTGLGL + K + D +       S   +GT   + F
Sbjct: 366 DKARSRKVGGTGLGLSIVKMIADKHNATISFESKVGEGTTFRVYF 410


>gi|331700441|ref|YP_004397400.1| multi-sensor signal transduction histidine kinase [Lactobacillus
           buchneri NRRL B-30929]
 gi|329127784|gb|AEB72337.1| multi-sensor signal transduction histidine kinase [Lactobacillus
           buchneri NRRL B-30929]
          Length = 617

 Score =  320 bits (821), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 80/377 (21%), Positives = 163/377 (43%), Gaps = 36/377 (9%)

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
             +L S+L   +DG+   +R G ++  N   +          + K     L+      + 
Sbjct: 263 RRRLDSVLANMTDGVLATDRRGNVIIINETAASFLDLDENQAMGKSILDVLDIRKDYSLR 322

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLL---SLRIIIKKLPFSSCYSLTMHDISEWKQE 567
             L +          E I   S+++  L+      +I ++  F S     + DI+E ++ 
Sbjct: 323 DLLEK--------PDELILDFSSEDHSLVLHAHFSLIQRESGFISGLVCVLRDITEQQRI 374

Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI-EY 626
                            +  F++ VSHE+RTPLT++  + E + +   G   +P+   ++
Sbjct: 375 DQD--------------RKQFVSNVSHELRTPLTSVRSYIEALSD---GAWKDPKLAPKF 417

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI-- 684
                   + ++ ++NDLL +S+++SG   +  E V+++E  +  ++   +   ++    
Sbjct: 418 LKVTQDETDRMIRMINDLLTLSRMDSGTQKMEVELVNINELFNYVLNRFDMILKKEDHPE 477

Query: 685 ---LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
               I+  F      +  D     Q+  N+++NAI ++P GG I     + +  +VIL V
Sbjct: 478 KTYTIKRYFTKRDLWVDLDTDRFTQVLDNLMNNAIKYSPDGGVITCRL-YETRNKVILSV 536

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            D G+G+   ++      F ++  ++  +  G+GLGL ++K  V+A  G+ +  S   KG
Sbjct: 537 SDQGLGIPRKDIPHIFDRFYRVDKARSRQQGGSGLGLAISKETVEALHGQIWAESVEGKG 596

Query: 802 TLIEIIFPLYDTSHPHD 818
           +   I  P Y+     D
Sbjct: 597 STFYIALP-YEPVEEED 612


>gi|322381789|ref|ZP_08055743.1| two-component sensor histidine kinase-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321154177|gb|EFX46499.1| two-component sensor histidine kinase-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 596

 Score =  320 bits (821), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 85/412 (20%), Positives = 164/412 (39%), Gaps = 34/412 (8%)

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
           +P    ++  E           ++  I  R +  +  Q+ S+L + +D +  ++ +G ++
Sbjct: 203 VPIVSNDEIGELAKTFNRMGGQLEETI--RVLSHQKEQMSSVLRSMTDAVISLDADGNVM 260

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV-----MNHYLTEILSLDLRQTLEKITL 530
            TN    K+     +    +  +  +  +   +     +   L  +   D   T  K T 
Sbjct: 261 LTNPQGQKIIKDWGKIDWNRNASTAILDSDSQLSHPLTLPDPLQRLF--DYVITEAKETF 318

Query: 531 GSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
                +  +   +++  L   +        + D++E                +    + D
Sbjct: 319 TKLHVQNEVW-SVVMTPLYGQNQVVGAVAVLRDVTE--------------EHRMDKLRKD 363

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           F+A VSHE+RTPL+ + G+SE + +   G        E A  I      +  +V DLLD+
Sbjct: 364 FVANVSHELRTPLSMVQGYSEALIDDIAGT--PDERKELAQVIHDESLRMGRLVKDLLDL 421

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN-NIPRILADLRSVKQ 706
           +K+E+G M++ F  + ++             A E+ I +       N   I  D   ++Q
Sbjct: 422 AKMEAGHMSMTFRELDVNTLFQRIQRKFSGLAKEREIRLICELPEGNHLVIEGDEDRLEQ 481

Query: 707 IALNILSNAIHFTPSGGQIIISTT---HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
           +  N+L NA   T     + +      +   E V++ V D G G+   ++    + F + 
Sbjct: 482 VLTNLLDNAFRHTHPHMSVTLRAELSMYNQEEAVLIEVEDEGQGIPAEDVPYVFERFYKA 541

Query: 764 PNSQQI-RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
             ++      GTGLGL + K ++DA+ GK  + S   KGT   I  P Y  +
Sbjct: 542 DKARTRGASGGTGLGLAIVKNIIDAHDGKVQVQSILGKGTTFSIFLPKYRPA 593


>gi|315282987|ref|ZP_07871270.1| sensor histidine kinase ResE [Listeria marthii FSL S4-120]
 gi|313613358|gb|EFR87219.1| sensor histidine kinase ResE [Listeria marthii FSL S4-120]
          Length = 565

 Score =  320 bits (821), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 80/378 (21%), Positives = 154/378 (40%), Gaps = 42/378 (11%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
             +  E  QL +IL   +DG+   + +  I+ +N    +                F    
Sbjct: 218 SALRQEKEQLSNILVGMADGVIKFSVDKTIILSNPPAEEFLH-----------NWFFSPE 266

Query: 505 TPSVMN------HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM 558
               +         L + L     Q  E        +   +++  ++            +
Sbjct: 267 NTEKVLIPVALNDLLNDTLEKKESQVGEITF----ADRTYVAILTLLYTGEHVRSIVAVI 322

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            D++E KQ +                KSDF+  VSHE+RTP++ + G+SE I +      
Sbjct: 323 RDMTEEKQLE--------------KMKSDFVNNVSHELRTPISMLQGYSEAIIDGV--AQ 366

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
            +    E+A  I      +  +VND+LD++++E+G   +  + + L   + + IS   + 
Sbjct: 367 SDEEVREFAQIIYDESLRIGRLVNDMLDLARMEAGFNQMDNQKLPLAPLLRKVISNFDVL 426

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS----GGQIIISTTHTSN 734
           A E  + +             D   ++Q+ +N++ NAI  T      G  I+  T   + 
Sbjct: 427 AKENFVELGLELETPDLEYSFDPDRMEQVLINLIMNAIRHTGKEGYAGKVILKQTIDEAE 486

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGEGTGLGLPLAKAMVDANMGKFY 793
             +++ V D G G+   ++    + F ++  +++  +  GTG+GL + K +V+A+ GK  
Sbjct: 487 SNLVITVSDNGSGIAEEDIPYLFERFYKVDKARKRGKAVGTGIGLAIVKNIVEAHNGKIS 546

Query: 794 IFSTPAKGTLIEIIFPLY 811
           + S   KG+   I  PLY
Sbjct: 547 VESELGKGSDFIITLPLY 564


>gi|206577626|ref|YP_002236379.1| aerobic respiration control sensor protein ArcB [Klebsiella
           pneumoniae 342]
 gi|206566684|gb|ACI08460.1| aerobic respiration control sensor protein ArcB [Klebsiella
           pneumoniae 342]
          Length = 779

 Score =  320 bits (821), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 86/435 (19%), Positives = 178/435 (40%), Gaps = 16/435 (3%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L            +L  +Q     +     I   +  +         ++ E
Sbjct: 81  EESRQRLSRLVDKLEEMRERDLKL-NVQLKDNIAQLNQEIGEREKAEAERETTLEQLKIE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             +    + ++E +   L S L+A+ D +   N +      NRA+  L G   + ++   
Sbjct: 140 MKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLIHLK 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCY 554
                 +     +     ++   ++  T E+        +    +R +    ++      
Sbjct: 200 PQDVYSEEAAEKVLETDEKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRRGL 259

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+        +   E+ S  K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 260 MGFGRDITERKR-------YQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE 312

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     +Y   I  S   + +I ND++D+ K+E  K+ L  +PV     +++  +L
Sbjct: 313 LTS----EQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENL 368

Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
             L A +K +      +  +P  ++ D   ++QI  N++SNA+ FTP GG + +   +  
Sbjct: 369 SGLQAQQKGLRFVLEPSLPLPHKVITDGTRLRQILWNLISNAVKFTPQGGGVNVRVRYDE 428

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMGKF 792
            + +   V D+G+G+   E +K    + Q+ +S   +   GTG+GL +++ +     G  
Sbjct: 429 GDILHFEVEDSGIGIPEAEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLARNMGGDI 488

Query: 793 YIFSTPAKGTLIEII 807
            + S P KG    + 
Sbjct: 489 SVTSQPGKGATFTLT 503



 Score = 44.2 bits (103), Expect = 0.081,   Method: Composition-based stats.
 Identities = 15/161 (9%), Positives = 38/161 (23%), Gaps = 8/161 (4%)

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIE 361
           +  +         ++  +     +D  P   F  +        N +  LLT       I 
Sbjct: 138 IEMKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLI- 196

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                  L      S+  A K +           +      + +                
Sbjct: 197 ------HLKPQDVYSEEAAEKVLETDEKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYY 250

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
           ++  +     G   +  + +  +  +E       + +   S
Sbjct: 251 DRVGKRRGLMGFGRDITERKRYQDALERASRDKTTFISTIS 291


>gi|606149|gb|AAA58012.1| protein kinase [Escherichia coli str. K-12 substr. MG1655]
          Length = 776

 Score =  320 bits (821), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 85/437 (19%), Positives = 179/437 (40%), Gaps = 21/437 (4%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L +           L  +Q     +     I   +  +         ++ E
Sbjct: 81  EESRQRLSRLVQKLEEMRERDLSL-NVQLKDNIAQLNQEIAVREKAEAELQETFGQLKIE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             +    + ++E +   L S L+A+ D +   N +      NRA+  L G   + ++   
Sbjct: 140 IKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCY 554
                     + +     ++   ++  T E+        +    +R +    ++      
Sbjct: 200 PADVYSPEAAAKVIETDEKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGL 259

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+        +   E+ S  K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 260 MGFGRDITERKR-------YQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE 312

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     +Y   I  S   + +I ND++D+ K+E  K+ L  +PV     +++  +L
Sbjct: 313 LTA----EQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENL 368

Query: 675 VQLYANEKRILIRTSFANNIP---RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
             L A +K   +R +    +P   +++ D   ++QI  N++SNA+ FT  G Q+ +   +
Sbjct: 369 SALQAQQKG--LRFNLEPTLPLPHQVITDGTRLRQILWNLISNAVKFTQQG-QVTVRVRY 425

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
              + +   V D+G+G+   EL+K    + Q+ +S   +   TG+GL +++ +     G 
Sbjct: 426 DEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPA-TGIGLAVSRRLAKNMGGD 484

Query: 792 FYIFSTPAKGTLIEIIF 808
             + S   KG+   +  
Sbjct: 485 ITVTSEQGKGSTFTLTI 501


>gi|311747684|ref|ZP_07721469.1| sensor histidine kinase/response regulator fusion protein
           [Algoriphagus sp. PR1]
 gi|126575672|gb|EAZ79982.1| sensor histidine kinase/response regulator fusion protein
           [Algoriphagus sp. PR1]
          Length = 981

 Score =  320 bits (821), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 114/743 (15%), Positives = 251/743 (33%), Gaps = 54/743 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           I  H YL  ++      +G    +++   LC       +     +      +++      
Sbjct: 124 IGQHDYLTYLNGAAQPVLGYEVGELLNNSLCSHIHPDDLGKVRDLWRNHSLKDSSVFFEV 183

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +     V ++ +         +FS  R F I        + +    ++++      
Sbjct: 184 RVKTKKRGFKV-LECSV--------QFSPDRFFIIARDITERTEKKNRELQVEQLMIEAP 234

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           +  K  +          S++       +  +     +     ++ L +         + +
Sbjct: 235 DQNKSGTW------QYDSEEEKLILNPVAAQFFGGIKTIDFANESLSSGLEEFKKLWKKA 288

Query: 269 LPE--QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
                 +   +              L+       E            Y ++ +N   E +
Sbjct: 289 FQLALSKAGESEEFEIQLAGAQEKFLKVKILPFEEQQKIHAGIIWDDYSNQKKNKKIEAL 348

Query: 327 DKC------PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
           +        P    V+  G +F +N    LL    S  +++    LS+L +  +L  +  
Sbjct: 349 ETLFNVSIEPSMV-VFPDGEIFLSNEQTNLLFGLDSTQELKHLKELSSLFEHSELWKDW- 406

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
                    +          + +    +     T +     +                + 
Sbjct: 407 -------IKNSDEEIFKTHSNILNGQGKQFFLETSVKSTNIDGQ---RYIQLSFRNISEK 456

Query: 441 RINKRKMEIEVMQLCSILEATSDGI--AIINREGI--ILSTNRAVSKLFGYPVEDILRKP 496
              ++ +E     L ++ E    G+   +++ EG       ++ ++ + G   E++    
Sbjct: 457 LELEKTLEKNNDFLMNLTEQVPGGLYQMVLDSEGRMNFSFLSKGITSVLGISPEEMDEVS 516

Query: 497 FTVF----LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK---LP 549
                   +       +                +         E+   +    +      
Sbjct: 517 DISVAISKVHPMDLPKVIMSSVASSKKQEPWQCQFRVKSGVNSEEYRWVLGAARPQLLAN 576

Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
               +   + DISE K+ +NKL+ A+  AEK S  KS+FL+ +SHE+RTPL AI G    
Sbjct: 577 GDMVWYGYLTDISEQKEFENKLNEARMTAEKASQIKSEFLSMISHELRTPLNAISGSVYS 636

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           +  +      N       N I+ + + ++ ++NDLLD  KIE+GK+ +  EP      ++
Sbjct: 637 LLQEE----TNSSQESALNTINFAVDNLIIMINDLLDFQKIEAGKLTIEKEPFQFQNLIN 692

Query: 670 EAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGG---QI 725
           + I  +  +A + +  +    +  +   +  D   + QI  N+++NA+ FT  G     +
Sbjct: 693 QIIKGLSFHAGDSKNNLNLHISEGLEIWLKGDKTRLSQILNNLITNALKFTNEGDVDVTV 752

Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
            +  +     +V   V+D+G+G+     +K    F Q+  +   +  GTGLGL + + ++
Sbjct: 753 KLKESSNEKAKVYFEVKDSGIGIAKENQDKIFNDFDQVRPTFSTKYGGTGLGLSITRKLL 812

Query: 786 DANMGKFYIFSTPAKGTLIEIIF 808
               G   + S   KG+      
Sbjct: 813 QLMGGTIQLESEVGKGSKFYFEL 835



 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 44/140 (31%), Gaps = 10/140 (7%)

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
           +       S L+     I  I +   +   N A   + GY V ++L       +  +   
Sbjct: 109 KESQQFFRSSLD-----IIAIGQHDYLTYLNGAAQPVLGYEVGELLNNSLCSHIHPDDLG 163

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW-KQ 566
            +          D     E       +  K+L   +          + +   DI+E  ++
Sbjct: 164 KVRDLWRNHSLKDSSVFFEVRVKTKKRGFKVLECSVQFSP----DRFFIIARDITERTEK 219

Query: 567 EKNKLSHAKKIAEKESSHKS 586
           +  +L   + + E    +KS
Sbjct: 220 KNRELQVEQLMIEAPDQNKS 239


>gi|167465146|ref|ZP_02330235.1| Two-component sensor histidine kinase [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 602

 Score =  320 bits (821), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 85/412 (20%), Positives = 164/412 (39%), Gaps = 34/412 (8%)

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
           +P    ++  E           ++  I  R +  +  Q+ S+L + +D +  ++ +G ++
Sbjct: 209 VPIVSNDEIGELAKTFNRMGGQLEETI--RVLSHQKEQMSSVLRSMTDAVISLDADGNVM 266

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV-----MNHYLTEILSLDLRQTLEKITL 530
            TN    K+     +    +  +  +  +   +     +   L  +   D   T  K T 
Sbjct: 267 LTNPQGQKIIKDWGKIDWNRNASTAILDSDSQLSHPLTLPDPLQRLF--DYVITEAKETF 324

Query: 531 GSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
                +  +   +++  L   +        + D++E                +    + D
Sbjct: 325 TKLHVQNEVW-SVVMTPLYGQNQVVGAVAVLRDVTE--------------EHRMDKLRKD 369

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           F+A VSHE+RTPL+ + G+SE + +   G        E A  I      +  +V DLLD+
Sbjct: 370 FVANVSHELRTPLSMVQGYSEALIDDIAGT--PDERKELAQVIHDESLRMGRLVKDLLDL 427

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN-NIPRILADLRSVKQ 706
           +K+E+G M++ F  + ++             A E+ I +       N   I  D   ++Q
Sbjct: 428 AKMEAGHMSMTFRELDVNTLFQRIQRKFSGLAKEREIRLICELPEGNHLVIEGDEDRLEQ 487

Query: 707 IALNILSNAIHFTPSGGQIIISTT---HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
           +  N+L NA   T     + +      +   E V++ V D G G+   ++    + F + 
Sbjct: 488 VLTNLLDNAFRHTHPHMSVTLRAELSMYNQEEAVLIEVEDEGQGIPAEDVPYVFERFYKA 547

Query: 764 PNSQQI-RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
             ++      GTGLGL + K ++DA+ GK  + S   KGT   I  P Y  +
Sbjct: 548 DKARTRGASGGTGLGLAIVKNIIDAHDGKVQVQSILGKGTTFSIFLPKYRPA 599


>gi|288942608|ref|YP_003444848.1| PAS/PAC sensor signal transduction histidine kinase [Allochromatium
           vinosum DSM 180]
 gi|288897980|gb|ADC63816.1| PAS/PAC sensor signal transduction histidine kinase [Allochromatium
           vinosum DSM 180]
          Length = 678

 Score =  320 bits (821), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 108/668 (16%), Positives = 219/668 (32%), Gaps = 63/668 (9%)

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244
             +          +R  +        ++           ++  ++  P       V+ + 
Sbjct: 19  RPSDARLLSPYTSRRTRRLDEETLAWERDLFVGGPVAVLVWRPEARWPVCHASPNVAPIF 78

Query: 245 EYYAH----------------KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288
            + A                   D +  E    L     +  ++      +        +
Sbjct: 79  GHSAERMMHSDFHYMSVIHPDDIDRIAGEVVRYLNEGRDTWEQRYRIVRPDGQVRWLYDF 138

Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPS 347
               ++ S E      +    +        E              ++ +      YANP+
Sbjct: 139 TVVDRDESAEPRLLRGYVMDET---ETQRRERDFQVLAASSADAVWISAVPAGFLYANPA 195

Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
            L LT++        A  L  L     ++     +   L             +   + +R
Sbjct: 196 ALRLTEHD-------ATSLGRLCWPDLIAPREHARLPELLERLDAGECVQTEVWIGRADR 248

Query: 408 ENSLA-MTFIPFEKANQFPENM-PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465
              L  +   P  +                   + R     +        +I++  +DGI
Sbjct: 249 TEVLVDLRLQPLGEGRCLGIGREHAEPQRSIVTENRRPPDVLRESQELYRAIVDQAADGI 308

Query: 466 AIINRE-GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
            +I+ +    +  N A  +  GY  ++  R   +      +P  +  +   I S      
Sbjct: 309 VLIDAQTLRFVEFNEAACRSLGYSRDEFARLGISDIQADLSPRGIARWRERINSSGQG-- 366

Query: 525 LEKITLGSTKEE--KLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKK------ 576
            +  TL   K    + + +      +     ++    DI+E K+ +++L   ++      
Sbjct: 367 -DFETLHRHKSGELRRVHVSNRALDIRQGRYWAAIWRDITERKRIEDELDEHRRHLEELV 425

Query: 577 ------------IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
                        AE  +  KS  LA +SHE+R P+ AI+G +  +K        +P   
Sbjct: 426 RTRTAELERARLEAESANLAKSILLANMSHEVRAPINAILGLNHRLK----ASANDPEQS 481

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           +    I  +G  +L I ND+LD+S++E+G + L      L  +++    L+      K +
Sbjct: 482 QRLGQIAEAGYHLLRIANDILDLSRMEAGTLRLERVDFELRHSLARLNLLLNAEVEAKGL 541

Query: 685 LIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VIL 739
            +R      +P R+  D   + QI LN+  NA+ F+  G  + +        +    V  
Sbjct: 542 RLRLVMDPTLPARLHGDPGRLGQILLNLTGNAVKFSEHG-TVTVKANLIDRHQNRVRVRF 600

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V D G G+     +     F Q+  S   +  G+GLGL ++K +V+   G+  + S P 
Sbjct: 601 EVCDEGTGIPEDRQDALFLAFEQLDVSTARQFGGSGLGLAISKRLVELMEGEIGVESRPG 660

Query: 800 KGTLIEII 807
            G+     
Sbjct: 661 VGSAFWFT 668



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/392 (8%), Positives = 86/392 (21%), Gaps = 29/392 (7%)

Query: 85  FTWNIDAHGYL--KEISEELPKTIGNYAFKMIGMRLC--DVSDILHID--PNNHIGDLLK 138
             W             S  +    G+ A +M+        V     ID      +  L +
Sbjct: 57  LVWR--PEARWPVCHASPNVAPIFGHSAERMMHSDFHYMSVIHPDDIDRIAGEVVRYLNE 114

Query: 139 RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
            ++TW  +  +   +G      +    +     + E    RG+ +        +      
Sbjct: 115 GRDTWEQRYRIVRPDG--QVRWLYDFTVVDRDESAEPRLLRGYVMDETETQRRERDFQVL 172

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
                 +                    ++       R+          +A   ++L+   
Sbjct: 173 AASSADAVWISAVPAGFLYANPAALRLTEHDATSLGRLCWPDLIAPREHARLPELLERLD 232

Query: 259 YPLLTSEESSLPEQEDFHTI-NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
                  E  +   +    + +L      +             +      +        E
Sbjct: 233 AGECVQTEVWIGRADRTEVLVDLRLQPLGEGRCLGIGREHAEPQRSIVTENRRPPDVLRE 292

Query: 318 GENLTPETVDKCPIPFFVYSHG--NLFYANPSFLLLTKYKSVD-----------DIEIAG 364
            + L    VD+      +           N +      Y   +           D+   G
Sbjct: 293 SQELYRAIVDQAADGIVLIDAQTLRFVEFNEAACRSLGYSRDEFARLGISDIQADLSPRG 352

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
                      S        +                 +   +    A  +    +  + 
Sbjct: 353 I--ARWRERINSSGQGDFETLHRHKSGELRRVHVSNRALDIRQGRYWAAIWRDITERKRI 410

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
            +   +       ++  +  R  E+E  +L +
Sbjct: 411 ED---ELDEHRRHLEELVRTRTAELERARLEA 439



 Score = 65.0 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 31/289 (10%), Positives = 83/289 (28%), Gaps = 18/289 (6%)

Query: 281 NQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN 340
           + +     + +L +        LS           +E      +     P+   V+    
Sbjct: 4   SDHPPTIQYDSLDDGRPSDARLLSPYTSRRTRRLDEETLAWERDLFVGGPVAVLVWRPEA 63

Query: 341 ---LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397
              + +A+P+   +  + S + +  +      +  P   D  A + V      R      
Sbjct: 64  RWPVCHASPNVAPIFGH-SAERMMHSDFHYMSVIHPDDIDRIAGEVVRYLNEGRDTWEQR 122

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
            R   I         +        ++  E     G   ++ +T       +        +
Sbjct: 123 YR---IVRPDGQVRWLYDFTVVDRDESAEPRLLRGYVMDETET-------QRRERDFQVL 172

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
             +++D + I       L  N A  +L  +    + R  +   +     + +   L  + 
Sbjct: 173 AASSADAVWISAVPAGFLYANPAALRLTEHDATSLGRLCWPDLIAPREHARLPELLERLD 232

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQ 566
           + +  QT          +   + + + ++ L           + +E ++
Sbjct: 233 AGECVQT---EVWIGRADRTEVLVDLRLQPL-GEGRCLGIGREHAEPQR 277



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/258 (11%), Positives = 64/258 (24%), Gaps = 11/258 (4%)

Query: 89  IDAH-GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
           IDA      E +E   +++G    +   + + D+   L         + +        +T
Sbjct: 311 IDAQTLRFVEFNEAACRSLGYSRDEFARLGISDIQADLSPRGIARWRERINSSGQGDFET 370

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                 G    V +   AL I        G     I                  +    L
Sbjct: 371 LHRHKSGELRRVHVSNRALDIR------QGRYWAAIWRDITERKRIEDELDEHRRHLEEL 424

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
              +       + + +  +         M ++V +        +  LK        S+  
Sbjct: 425 VRTRTAELERARLEAESANLAKSILLANMSHEVRAPINAILGLNHRLKASANDPEQSQRL 484

Query: 268 SLPEQEDFHTINLN----QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
               +  +H + +       ++ +              +   R +  L+A  +       
Sbjct: 485 GQIAEAGYHLLRIANDILDLSRMEAGTLRLERVDFELRHSLARLNLLLNAEVEAKGLRLR 544

Query: 324 ETVDKCPIPFFVYSHGNL 341
             +D           G L
Sbjct: 545 LVMDPTLPARLHGDPGRL 562



 Score = 44.2 bits (103), Expect = 0.10,   Method: Composition-based stats.
 Identities = 36/380 (9%), Positives = 87/380 (22%), Gaps = 35/380 (9%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEG 154
               +    +   + A  +  +   D+           + + L        +  +W    
Sbjct: 189 FLYANPAALRLTEHDATSLGRLCWPDLIAPREHARLPELLERLDAGECVQTE--VWIGRA 246

Query: 155 TNLYVPIDLAALPIYSRNREFSGFRGFGIVH--------VNRVDNDPRALGKRLDKKFSH 206
               V +DL   P+          R  GI          +   +  P  + +   + +  
Sbjct: 247 DRTEVLVDLRLQPLGEG-------RCLGIGREHAEPQRSIVTENRRPPDVLRESQELYRA 299

Query: 207 LHEIKKGHSSVEKE-KYDIFSQQSPP----PHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
           + +       +                    + R +     +++  A             
Sbjct: 300 IVDQAADGIVLIDAQTLRFVEFNEAACRSLGYSRDEFARLGISDIQADLSPRGIARWRER 359

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE--YLSHRNHPSLSAYFDEGE 319
           + S       +      +            L       +   +        +    DE  
Sbjct: 360 INSSG-QGDFETLHRHKSGELRRVHVSNRALDIRQGRYWAAIWRDITERKRIEDELDEHR 418

Query: 320 NLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
               E V          +      AN +  +L    S +       +  L    K S N+
Sbjct: 419 RHLEELVRT-RTAELERARLEAESANLAKSILLANMSHEVRAPINAILGLNHRLKASAND 477

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
             +   L         A   L  I  +      +     E      E +           
Sbjct: 478 PEQSQRL----GQIAEAGYHLLRIAND-----ILDLSRMEAGTLRLERVDFELRHSLARL 528

Query: 440 TRINKRKMEIEVMQLCSILE 459
             +   ++E + ++L  +++
Sbjct: 529 NLLLNAEVEAKGLRLRLVMD 548


>gi|126738369|ref|ZP_01754090.1| sensor histidine kinase/response regulator [Roseobacter sp.
           SK209-2-6]
 gi|126720866|gb|EBA17571.1| sensor histidine kinase/response regulator [Roseobacter sp.
           SK209-2-6]
          Length = 764

 Score =  320 bits (821), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 104/455 (22%), Positives = 192/455 (42%), Gaps = 22/455 (4%)

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
           L+D  A +      ++R      A L           A+         Q      ++   
Sbjct: 3   LADKLAEERRARLAAERLLELKQAELTAANRKLGR-HALALTKQIGVTQAEVATVRDENA 61

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
               D      K+E    +L   ++A  DG A  + +  ++  N A   +F    E    
Sbjct: 62  KVKSDLTQANEKIEKAERRLWHSIQAFQDGFAFFDADSKLIGANTAYLNIFDGLEEVTPG 121

Query: 495 KPFTVFLEQNTPSVM-------NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
             +   L+  T   +            ++++        +  +    +++ L L   I +
Sbjct: 122 ISYVRILQILTDEGLVNTGEISPDSWRKMMTDRWMSLAPEPIVVQMWDDRYLRL---IDQ 178

Query: 548 LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
                       DI+     + +L  A++ AE  +  KS FLA +SHEIRTP+  ++G +
Sbjct: 179 KGHGGDMVSLALDITSTVHYEEELRSARERAEAANRAKSAFLANMSHEIRTPMNGVVGMA 238

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
           E++ +       +     YAN I  SG  +L I+ND+LD SKIE+ KM LH EP  L+ A
Sbjct: 239 ELLSDTSL----SEEQKLYANTIKNSGEALLVIINDVLDYSKIEADKMVLHEEPFDLERA 294

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII 726
           + E + L+Q  A +K + +   +   +P R + D   ++Q+  N+  NA+ FT  G  + 
Sbjct: 295 IHEIVMLLQPTARDKGLTMLVDYDLFLPTRFVGDRGRIRQVMTNLAGNAVKFTNEG-HVT 353

Query: 727 IST---THTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           +     ++       +   + DTG+G+   +++     F Q+ + +  + EGTGLGL ++
Sbjct: 354 LRVTGISNPDEGTCSVHCLIEDTGIGIPADKVDHVFGEFNQVEDERNRKFEGTGLGLAIS 413

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           K +++   G+ ++ S   +G+      PL     P
Sbjct: 414 KKLIELMDGEIWVESDEGEGSCFGFRIPLPVAEGP 448


>gi|297583656|ref|YP_003699436.1| multi-sensor signal transduction histidine kinase [Bacillus
           selenitireducens MLS10]
 gi|297142113|gb|ADH98870.1| multi-sensor signal transduction histidine kinase [Bacillus
           selenitireducens MLS10]
          Length = 597

 Score =  320 bits (821), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 107/575 (18%), Positives = 227/575 (39%), Gaps = 33/575 (5%)

Query: 235 RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294
           RM+++++  TE   +    +  +   LL +E  +L ++     +++           L +
Sbjct: 38  RMQDRIAKETEVVVYHLARVDFDDGDLLQTESEALADR-----LDVRVTVMDSEGTVLSD 92

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKY 354
            S +  +  +H N P + A  +E         D        +    +   N    +    
Sbjct: 93  TSADPNQMDNHLNRPEIQAVINEISGREIRFSDTVNSELLYF---AMSAENGDGFVRLGV 149

Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
              +  ++   +  LL    L     I  +    +++           +           
Sbjct: 150 PMDELDDVYRNIWALLFVSFLVAFVVILILTSRLTNQMIKPIE-DARRVANELAKGNFSA 208

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII 474
                   +  E      +  +++       + + E  +L +++E    G+ +IN  G I
Sbjct: 209 RTYEGTNFETGELNRSINVLAKNLMQITRTYESQQE--RLETLIENMGSGLILINDTGDI 266

Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
           L  N +   +F           +   ++    +     +        RQ      +    
Sbjct: 267 LLVNHSCDAIFQEDTAKWPGSLYYQVIKNKKINTFIQKVFLTEERKRRQISLASGIYMHH 326

Query: 535 EEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
            +  +    II          L  HDI+E K+ +                + DF+A VSH
Sbjct: 327 YD--VHGAPIIASDGDLKGIVLVFHDITELKKLE--------------KARKDFVANVSH 370

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESG 653
           E++TP+T++ GF+E +     G + +     ++   I    + +  ++ +LL++S+IE  
Sbjct: 371 ELKTPVTSLKGFTETLLE---GAVNDDELRMKFLRIIANESDRLETLIFELLELSRIEGE 427

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713
             +L+++ V ++  + E   ++   A+ K++ I    + + P +  +   +KQI +N+++
Sbjct: 428 AFSLNWQTVDIEPLIDEVFDMLGEKASAKQMTIEKKISGS-PILAGEGARIKQILINLIN 486

Query: 714 NAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
           NAI +T  GG I +       E+V+L V DTG+G++  E+ +  + F ++  ++     G
Sbjct: 487 NAIVYTHEGGTITVRVK-EQAEQVVLEVEDTGIGLSKKEIPRIFERFYRVDRARSRNSGG 545

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           TGLGL + K + +A+  K  + S P KGT   I F
Sbjct: 546 TGLGLAIVKHLAEAHRAKLSVDSEPGKGTTFRIAF 580


>gi|57234548|ref|YP_181367.1| sensory box sensor histidine kinase [Dehalococcoides ethenogenes
           195]
 gi|57224996|gb|AAW40053.1| sensory box sensor histidine kinase [Dehalococcoides ethenogenes
           195]
          Length = 853

 Score =  320 bits (821), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 112/751 (14%), Positives = 240/751 (31%), Gaps = 50/751 (6%)

Query: 74  FVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI 133
           F   P    +   +     G L   +    +  G  A ++ G +      +   +    I
Sbjct: 144 FDEAPTLMPLIIGFE--PDGKLLFANRIFEEATGYPASEISGDKWQSCG-LFSEEARERI 200

Query: 134 GDLLKRQNTWY---GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVD 190
             +L+          +  L    G   +    L+           S +          + 
Sbjct: 201 AQMLQNSQNDSIQPFEIRLIHKNGQTCW----LSGHSQIINPGTVSPYLQLS-ARDITIC 255

Query: 191 NDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK 250
                +            +      +  K      S      + R       +T+     
Sbjct: 256 KKSEKMLLLTRFAVERATDAIFWTDAGGKFVDVNQSACDSLGYQREDLLKLKVTDIDTLI 315

Query: 251 DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310
                 EK+       + L  +     I       +     LQ +  E    ++   +  
Sbjct: 316 TSQTDWEKHWEKLKARTYLHFESVHRNIQGGSIPVEITANYLQYDKMEYN--IAIVRNIR 373

Query: 311 LSAYFDEGENLTPETVDKCPI-PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
                ++    T  +++       +V  +GN+  AN S      Y   +       L +L
Sbjct: 374 QRKEAEKHLKFTSFSMEHSADLIIWVNQNGNIIGANRSAYQSLGYTHDE-------LCSL 426

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
                       +   L+   +  I  +     I  N +    +         +F     
Sbjct: 427 TVEDINPVCTPERWKTLWGRLKHDIKYAMETALITKNGQK---LPIDVMCNFLEFEGVDY 483

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
              +     + +    K+     +     +  S+ + +++ +  I   NRA +K      
Sbjct: 484 CCAVVRNITERKNVYAKLLHAAEEWRITFDNISEIVFLLDNDFNIQRANRAFAKALNCQP 543

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK--ITLGSTKEEKLLSLRIIIKK 547
           ++IL K     L       +N            Q +     T+    +E +  +      
Sbjct: 544 QEILNKKCYEVLHHTNCPQVNCPKLVASDTQKTQYINYFEETIEKHFQETIDPILDT--- 600

Query: 548 LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
              S      + D++E  +   +L    ++A        +  A ++HE+  PLT++IGFS
Sbjct: 601 DGQSLGTVHILKDLTEHHKMAAQLMITDRLA-----SVGEMAAGLAHELNNPLTSVIGFS 655

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
           E+++ ++               I +      +++ +LL  ++    +     + V ++  
Sbjct: 656 ELLQEKKL----PEDLQRDIQIISQEALRAAEVIRNLLAFAR----RHEPSKDWVDMNVL 707

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF--TPSGGQI 725
           + + + +         I I T+   ++P I AD   ++Q+ LNI+ NA  +  T + G+ 
Sbjct: 708 IHKVLDICNYEQRVNNIHIVTNLDADLPEIKADYFQMQQVLLNIIINA-EYFITKAHGEG 766

Query: 726 IISTTHTSNEE-VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
            I  + +   + + + ++D G GM+   L +   PF          G+GTGLGL +   +
Sbjct: 767 TIVISSSRFGDNIRISIKDDGPGMSENVLNRIFDPFFTTK----EVGKGTGLGLSIGHGI 822

Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
           +  + GK Y  S+  KG    I  P+   + 
Sbjct: 823 ITQHGGKLYAESSEGKGATFFIELPINPPAQ 853


>gi|71908424|ref|YP_286011.1| PAS [Dechloromonas aromatica RCB]
 gi|71848045|gb|AAZ47541.1| PAS protein [Dechloromonas aromatica RCB]
          Length = 1023

 Score =  320 bits (821), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 92/478 (19%), Positives = 193/478 (40%), Gaps = 40/478 (8%)

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSD-RTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
           G   +++  +  +       +  R+D  +C +   +    +     ++         A +
Sbjct: 394 GERVIVEDIQRHEYWRDYVELARRADLGSCWSQPFKNREGRVLGTFAIYHRQPTQPSAAE 453

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVS 482
                    +    V++   +  +E        I++ ++D I ++          + +V 
Sbjct: 454 IALIEDYASLAELAVESAQTESALEKSRELYRLIVDNSNDVIWLMALPAMKFTYVSPSVL 513

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE----ILSLDLRQTLEK-ITLGSTKEEK 537
           ++ G+  E+I+ +P        +  ++   L +    + + D+R            K+ +
Sbjct: 514 RMRGWTAEEIMAQPLEAASTPESTLLIKAQLKKNLELLRAGDMRGRFATTEVDQPCKDGR 573

Query: 538 LLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAK------------------ 575
           ++   ++   L   S           D++E K+ + +L   +                  
Sbjct: 574 IIHTEVVTTLLLDESGQPSQILGVTRDVTERKRAEAELEQYRHHLEKMVEDRTAALSDAK 633

Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
           + AE  +  KS FLA +SHE+RTP+ AI+G ++++  +      + R  E  + + ++  
Sbjct: 634 EAAEAANRAKSTFLANMSHELRTPMNAIMGMTDLVLRRS----TDDRQREQLSKVVQASR 689

Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695
            ++ ++ND+LD+SKIE+ ++ L   P  L E      +LV     EK +L++ S A  + 
Sbjct: 690 HLMAVINDILDLSKIEAERLTLEKIPFRLTEIFDNLKNLVGERVAEKGLLLKISKAPELS 749

Query: 696 RI--LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDTGVGMT 749
            +    D   + QI LN+  NA+ FT  G  I +S +   +      +   V DTG+G+ 
Sbjct: 750 NMVFRGDPLRLGQILLNLTGNAVKFTAEGS-IALSVSVVEDHPHDVVLRFEVCDTGIGIA 808

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
             +  +    F Q   S      G+GLGL +++ +     G   + STP  G+     
Sbjct: 809 AVDQGRLFTAFEQADGSTTREYGGSGLGLAISRRLAKLMGGNIGVESTPGVGSTFWFT 866



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/350 (9%), Positives = 93/350 (26%), Gaps = 34/350 (9%)

Query: 236 MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN 295
            +++        A + D+      P    E   L     +H         +        +
Sbjct: 403 QRHEYWRDYVELARRADLGSCWSQPFKNREGRVLGTFAIYHRQPTQPSAAEIALIEDYAS 462

Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTK 353
             E     +        +  ++   L    VD      ++ +       Y +PS L +  
Sbjct: 463 LAELAVESAQT-----ESALEKSRELYRLIVDNSNDVIWLMALPAMKFTYVSPSVLRMRG 517

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
           + + + +      ++  ++  L      K + L R+       +             +  
Sbjct: 518 WTAEEIMAQPLEAASTPESTLLIKAQLKKNLELLRAGDMRGRFATTEVDQPCKDGRIIHT 577

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
             +     ++  +     G+  +  + +  + ++E     L  ++E         +R   
Sbjct: 578 EVVTTLLLDESGQPSQILGVTRDVTERKRAEAELEQYRHHLEKMVE---------DRTAA 628

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
           +     A           +      +    N    M   +    + D +    +  L   
Sbjct: 629 LSDAKEAAEAANRAKSTFLANMSHELRTPMNAIMGMTDLVLRRSTDDRQ----REQLSKV 684

Query: 534 KEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
                         +  S      ++DI +  + + +    +KI  + + 
Sbjct: 685 --------------VQASRHLMAVINDILDLSKIEAERLTLEKIPFRLTE 720



 Score = 46.6 bits (109), Expect = 0.019,   Method: Composition-based stats.
 Identities = 22/244 (9%), Positives = 61/244 (25%), Gaps = 30/244 (12%)

Query: 94  YLKEISEELPKTIGNYAFKMIGMRLCDVSDILH-------IDPNNHIGDLLKRQNTWYGK 146
               +S  + +  G  A +++   L   S           +  N  +      +  +   
Sbjct: 504 KFTYVSPSVLRMRGWTAEEIMAQPLEAASTPESTLLIKAQLKKNLELLRAGDMRGRFATT 563

Query: 147 TTLWP-IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
               P  +G  ++  +    L     + + S  +  G+           A  ++      
Sbjct: 564 EVDQPCKDGRIIHTEVVTTLL--LDESGQPS--QILGVTRDVTERKRAEAELEQYRHHLE 619

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
            + E +    S  KE  +  ++        M +++ +         D++          E
Sbjct: 620 KMVEDRTAALSDAKEAAEAANRAKSTFLANMSHELRTPMNAIMGMTDLVLRRSTDDRQRE 679

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
           +                    +     ++      + L      +     ++      E 
Sbjct: 680 Q------------------LSKVVQASRHLMAVINDILDLSKIEAERLTLEKIPFRLTEI 721

Query: 326 VDKC 329
            D  
Sbjct: 722 FDNL 725


>gi|83955167|ref|ZP_00963823.1| probable sensor/response regulator hybrid protein [Sulfitobacter
           sp. NAS-14.1]
 gi|83840496|gb|EAP79669.1| probable sensor/response regulator hybrid protein [Sulfitobacter
           sp. NAS-14.1]
          Length = 1064

 Score =  320 bits (821), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 103/648 (15%), Positives = 216/648 (33%), Gaps = 32/648 (4%)

Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS 242
           ++   R   D  A    L ++     E +                +           +  
Sbjct: 309 VLRAIRQRGDSLAEVAALREQQISAREEENRSIIENSVVGIFILDERREILFANHAALEI 368

Query: 243 LTEYYAHKDD---VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
             ++              +   L +E              L+       + TL    + +
Sbjct: 369 FDKHEDGMGGLPLTKFVTEAGWLPAEAGYNATGTKQDGSTLHLDLHYNEWETLNGVKRIT 428

Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVD 358
                              +      +    I  F +         +P++  +       
Sbjct: 429 AIVRDVSVEVGAVGELAGIKERYDHALAGSEIGVFEIDLMSGTSVVSPTWRKIMDVGPEV 488

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH-TIQWNRENSLAMTFIP 417
           +      LS +          A +  +  +++R+      +   + +W R +++ +    
Sbjct: 489 EDTQEEFLSRIHPDDLPRLIEADQDCITGKAERSRTEYRMQFGESWRWMRSDAVVV---- 544

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
                     +   G + +    R  +  +E    +  ++L+A   G+A +N  G   S 
Sbjct: 545 --DRADDGSAIRMVGTQSDITALRHARNALEASEKRFRTVLDAAPVGMATLNSNGQFTSV 602

Query: 478 NRAVSKLFGYPVEDILRK-PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
           N A+ +L GY  + +  +      + +    +M   +T        +          K+ 
Sbjct: 603 NNAMCELTGYSQKVMTDRFNLAQIIPEEDVKLMRDIVTRFTESGSNEVYRGEHPILHKDG 662

Query: 537 KLLS----LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
                   +     K   +  +   ++DI++ K+                  K++F++ V
Sbjct: 663 GQRWGLFNITWTFDKNEGAYVFIAQVNDITDQKKIDE--------------IKNEFVSTV 708

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHE+RTPLT+I G    +             +        + + +  IVND+LD+ KI S
Sbjct: 709 SHELRTPLTSIKGAL-GLIEMSARDTMPASALRLIEIARNNADRLTTIVNDILDLEKISS 767

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712
           GK++    P+SL+E +S A+  +  +A      +     +    + AD   + Q+  N++
Sbjct: 768 GKIDFDLSPMSLNEVISSAVQEMMPFAVTHNTKLVMDLPDTDINVAADWSRMMQVLANLM 827

Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           SNA  ++  G  + I    T  +  I+ V++ G G+      +  + F Q   S      
Sbjct: 828 SNACKYSSEGTDVTIKAE-TIGDMAIVYVQNFGPGVPENFKNRIFQAFSQADGSDTRAKG 886

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820
           GTGLGL + + +V    G     S P+  T+     PL   +  +D +
Sbjct: 887 GTGLGLNITRQIVWRQGGNIGFESKPSGTTIFWFTCPLATDAEGYDVL 934


>gi|320334823|ref|YP_004171534.1| multi-sensor signal transduction histidine kinase [Deinococcus
            maricopensis DSM 21211]
 gi|319756112|gb|ADV67869.1| multi-sensor signal transduction histidine kinase [Deinococcus
            maricopensis DSM 21211]
          Length = 1006

 Score =  320 bits (821), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 100/803 (12%), Positives = 236/803 (29%), Gaps = 96/803 (11%)

Query: 90   DAHGYLKEISEELPKTIGNYAFK-MIGM-RLCDVSDILHIDPNNH-IGDLLKRQNTWYGK 146
            D +G L  +++     +G        G      ++   + + ++       +   +   +
Sbjct: 215  DINGRLILVNDAYLHLLGYTRDDFDQGRIDWASLTPEEYREADDRAFQQAFRDGASDQYE 274

Query: 147  T----------------TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVD 190
                               +   G  L V          +  R     RG     V    
Sbjct: 275  KEMLTRTGERLPLSLILMRYEERGQQLVVGYLQDLRAHRAAQRTLEEQRGHLEAKVRERT 334

Query: 191  NDPRALGKRLDKKFSHLHEIKK--GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA 248
             +  A  + L+       ++      S + +   +I     P            L     
Sbjct: 335  AELEARTRALESFAELTRDLATETDPSVLVRRAQEIVLGLLPEGLAVYYEPRRQLWHAAV 394

Query: 249  HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
               D+   +    + +       +         Q   + ++    ++  E   ++     
Sbjct: 395  QTGDLGNADLQRAINAGLPFETTRNLLTPWRTRQGYYQDHYDPTTDDLGERVAHIGASAS 454

Query: 309  P-----------------SLSAYFDEGENLTPETVDKCPIP------------------- 332
                                  +      +    V    +                    
Sbjct: 455  LPLLVHGRVQGVFVIALFRQHRWSTTDRAVLETAVHSLGLALERAESIAHLEQRTQEVSR 514

Query: 333  ------FFVYSHGNLFY-ANP---------SFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
                    V   G+L Y  NP         +   +T Y   D        +  L  P   
Sbjct: 515  WRERYEVAVNGSGHLLYDWNPTTDQIVYGGAVRAITGYAPDDLAGNLSDWTERLIHPDDR 574

Query: 377  DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
            D      +                  I     +   +    +       +     G   +
Sbjct: 575  DA-FNTEIARVIEHSDTFHLE---FRIVRQDGSVREVQDDGYFMRGPDGQVTHMVGFVND 630

Query: 437  DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
              + R  +R++   +     IL    +G+  ++ +G     N A  ++ GY  E+ +  P
Sbjct: 631  VTEQRRTERELRAALRFNELILNNMGEGLTGMDTQGRTTFANPAALRMLGYTPEEFIGVP 690

Query: 497  FTVFLEQNTP-----SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
                +    P          ++    +      ++       ++   + +      +   
Sbjct: 691  QHELIHHTRPDGTPYPAEACHIYAAFTDGQVHHVDDEVFWR-RDGSAVPVDYTSTPIRNE 749

Query: 552  SCY----SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
              +     L+  DI+  +  +  L  + +   + +     F    SH+++ P  A+  F+
Sbjct: 750  HGHIEGAVLSFRDITARRSAEADLRRSNEELRRSNRELEQFAYIASHDLQAPARAVTSFA 809

Query: 608  EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
            ++I   R+  + + R + Y   I   G  +  +V+DLL  S++ +  +    E V     
Sbjct: 810  DIIAR-RYAHVLDERGLTYLRQITEGGQHMKRLVDDLLTFSRVHT--LQRPPERVHSASI 866

Query: 668  VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727
             S  ++ +          +    A  +P +LAD   + Q+  N++ N + +        +
Sbjct: 867  FSAVLARLSGDLEASGAQVT---AGPLPDVLADASQLDQVLQNLILNGVKYRREDVAPRL 923

Query: 728  STTHTSNE-EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
              +   +       V+D G+G+     E+  + F ++    + + EGTG+GL + K +++
Sbjct: 924  HVSAQPDGPMWHFLVQDNGIGIEEAYFERIFEIFQRLH--TRDQYEGTGIGLAVCKKIIE 981

Query: 787  ANMGKFYIFSTPAKGTLIEIIFP 809
             + G+ ++ STP +G+      P
Sbjct: 982  RHGGRLWVTSTPGEGSTFHFTLP 1004



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 55/389 (14%), Positives = 110/389 (28%), Gaps = 23/389 (5%)

Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303
            +  A     L      +  +  ++    + +  +                   ++ + L
Sbjct: 3   EQSVADAPPALSERLQDVTEALAAARTADDVYRVVLHPALDALNAIAGAVLLVNDAGDTL 62

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIA 363
           S                  P  V   P    +     LFY +   L L  Y  ++    +
Sbjct: 63  SMAARQGYPQDAQTIWQDGPVQV-NIPAGDALLHRHALFYEHRDAL-LHDYPELEARTGS 120

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
                    P   D   +  ++L   +     A  R             +  +  + A  
Sbjct: 121 VAPVATSVLPMFLDERPLGVLVLDFKEPHDFTAEERRF-----------LRTLAAQCALA 169

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
                  N +  E    R  +R+++    +   ++EA+  GIA  +  G ++  N A   
Sbjct: 170 LGRARLLNELTTELEMRRATERELQSSETRFRRLVEASPVGIAAGDINGRLILVNDAYLH 229

Query: 484 LFGYPVEDILRKPFTV--FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
           L GY  +D  +          +      +    +          EK  L  T E   LSL
Sbjct: 230 LLGYTRDDFDQGRIDWASLTPEEYREADDRAFQQAFRDGASDQYEKEMLTRTGERLPLSL 289

Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
            ++  +          + D+   +  +  L   +   E +   ++  L     E RT   
Sbjct: 290 ILMRYEERGQQLVVGYLQDLRAHRAAQRTLEEQRGHLEAKVRERTAEL-----EART--R 342

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           A+  F+E +             +  A  I
Sbjct: 343 ALESFAE-LTRDLATETDPSVLVRRAQEI 370



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 24/261 (9%), Positives = 61/261 (23%), Gaps = 14/261 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK-------RQN 141
           +D  G     +    + +G    + IG+   ++      D   +  +           Q 
Sbjct: 662 MDTQGRTTFANPAALRMLGYTPEEFIGVPQHELIHHTRPDGTPYPAEACHIYAAFTDGQV 721

Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
                   W  +G+   VP+D  + PI + +    G                 A  +R +
Sbjct: 722 HHVDDEVFWRRDGSA--VPVDYTSTPIRNEHGHIEGA--VLSFRDITARRSAEADLRRSN 777

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQ---SPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
           ++    +   +  + +        ++          R    V         +      + 
Sbjct: 778 EELRRSNRELEQFAYIASHDLQAPARAVTSFADIIARRYAHVLDERGLTYLRQITEGGQH 837

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
              L  +  +              ++   +   L   S +     +      L     + 
Sbjct: 838 MKRLVDDLLTFSRVHTLQRPPERVHSASIFSAVLARLSGDLEASGAQVTAGPLPDVLADA 897

Query: 319 ENLTPETVDKCPIPFFVYSHG 339
             L     +            
Sbjct: 898 SQLDQVLQNLILNGVKYRRED 918


>gi|197116672|ref|YP_002137099.1| Cache/HAMP/PAS/PAC domain-containing sensor histidine kinase
           response regulator [Geobacter bemidjiensis Bem]
 gi|197086032|gb|ACH37303.1| sensor histidine kinase response regulator, Cache, HAMP, PAS, PAC,
           PAS and PAC domain-containing protein [Geobacter
           bemidjiensis Bem]
          Length = 1113

 Score =  320 bits (821), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 100/667 (14%), Positives = 206/667 (30%), Gaps = 68/667 (10%)

Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP---PPHLRMKNK 239
           I  + R  N      +R    +  L E                             ++ +
Sbjct: 341 IGQMARTFNKMLLEQERSRDFYLTLFENFPAMVWRAGTDGKCDYFNQTWLEFTGRPLEEE 400

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSE-ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE 298
                    H +++    +  L   E       +      + +                E
Sbjct: 401 QGDGWMQGVHPEELDFCCRTYLDAVENRRPFQMEYRLRHRSGSYRWITDMGRPFYGIDGE 460

Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSV 357
              Y+      +      +        +++ P    +    G + Y NP  +  T Y+  
Sbjct: 461 FVGYIGTCYDVTERQEAADKILKLSRVIEQSPNAVLIATLDGTIEYVNPMTVEATGYEVA 520

Query: 358 DDI----------EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
           + +          E   G    L             +   R +         L  I+   
Sbjct: 521 ELVGSDMKRLLPHEAQLGFKLALRELVRRGKEWRGEIPARRKEGAIFWEQVTLSPIKTMD 580

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
             +  +                   I+ +    R  +  ++    +   + E     +  
Sbjct: 581 GKATHLVC-----------------IKEDITQRRQFELSLKESEERYRLLFENNPHPMWA 623

Query: 468 IN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
            + +    L+ N A  + +GY +++ L          ++       L  +   +      
Sbjct: 624 YDLKALSFLAVNNAALRHYGYSMQEFLEMKLNDLSAHSS-----EGLELLPQGETSTAGA 678

Query: 527 KITLGSTKEEKLLSLRII--IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES-- 582
            +     K+  ++ +  I  + K        + +HD++E  + + +    +    +    
Sbjct: 679 PLKRHVKKDGSVILVETISQVMKFAGVDAEIVMVHDVTEKLRAEQEKLALEHQLTQSQKM 738

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
                    ++H+    LTAIIG++ +++ +        R       I R+      +  
Sbjct: 739 EAIGTLTGGIAHDFNNILTAIIGYTTMMQLELDEEHPLQRK---VGEILRASERAASLTR 795

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702
            LL  S+ ++G    +  P  L+  ++    L+Q    E  I +R+  A     I+AD  
Sbjct: 796 SLLAYSRRQAG----NPAPTGLNAIINNVDILLQRLIPE-NIELRSQLAPEELSIMADSG 850

Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTH--------------TSNEEVILRVRDTGVGM 748
            ++Q+ +N++ NA    P GG + +ST                      +L V D+GVGM
Sbjct: 851 QIEQVIMNLVVNARDAMPEGGVLSLSTESMALDREFVAKHGYGRPGSYALLAVADSGVGM 910

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
                ++  +PF          G+GTGLGL +   +V  + G    +S P  GT+  I  
Sbjct: 911 DEKTRDRIFEPFFTTKAP----GKGTGLGLAMVYGIVKQHAGFINCYSEPGHGTVFRIYL 966

Query: 809 PLYDTSH 815
           PL D   
Sbjct: 967 PLIDAPA 973



 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 46/426 (10%), Positives = 109/426 (25%), Gaps = 30/426 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID-PNNHIGDLLKRQNTWY 144
            W     G     ++   +  G    +  G           +D       D ++ +  + 
Sbjct: 373 VWRAGTDGKCDYFNQTWLEFTGRPLEEEQGDGWMQGVHPEELDFCCRTYLDAVENRRPFQ 432

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            +  L    G+  Y  I     P Y  + EF G+   G  +      +      +L +  
Sbjct: 433 MEYRLRHRSGS--YRWITDMGRPFYGIDGEFVGY--IGTCYDVTERQEAADKILKLSRVI 488

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
                     +     +Y          +   +   S +     H+  +        L  
Sbjct: 489 EQSPNAVLIATLDGTIEYVNPMTVEATGYEVAELVGSDMKRLLPHEAQLGFKLALRELVR 548

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL----SHRNHPSLSAYFDEGEN 320
                  +          + ++     ++    ++   +                 E E 
Sbjct: 549 RGKEWRGEIPARRKEGAIFWEQVTLSPIKTMDGKATHLVCIKEDITQRRQFELSLKESEE 608

Query: 321 LTPETVDKCPIPFFVYSHGNLFY--ANPSFLLLTKYKSVDDIE------IAGGLSTLLDA 372
                 +  P P + Y    L +   N + L    Y   + +E       A     L   
Sbjct: 609 RYRLLFENNPHPMWAYDLKALSFLAVNNAALRHYGYSMQEFLEMKLNDLSAHSSEGLELL 668

Query: 373 PKLSDNNAIKPV-MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
           P+   + A  P+    + D + I        +++   ++  +      +  +  +     
Sbjct: 669 PQGETSTAGAPLKRHVKKDGSVILVETISQVMKFAGVDAEIVMVHDVTEKLRAEQEKLAL 728

Query: 432 GIEPEDVDTRINKRKMEIEVMQ-----LCSILEATSDGIAIINRE-------GIILSTNR 479
             +            +   +       L +I+  T+     ++ E       G IL  + 
Sbjct: 729 EHQLTQSQKMEAIGTLTGGIAHDFNNILTAIIGYTTMMQLELDEEHPLQRKVGEILRASE 788

Query: 480 AVSKLF 485
             + L 
Sbjct: 789 RAASLT 794


>gi|302878851|ref|YP_003847415.1| multi-sensor signal transduction histidine kinase [Gallionella
           capsiferriformans ES-2]
 gi|302581640|gb|ADL55651.1| multi-sensor signal transduction histidine kinase [Gallionella
           capsiferriformans ES-2]
          Length = 942

 Score =  320 bits (821), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 95/646 (14%), Positives = 217/646 (33%), Gaps = 34/646 (5%)

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDI----FSQQSPPPHLRMKNKV 240
              R   +     + L++ F  L E        +     I     +  +   H   +  +
Sbjct: 316 RGERRRREAVDALQILNRDFMTLLESTTDFIYFKDRDSRIRFCSQTLANITGHQNWREMI 375

Query: 241 SSLTEYYAHKD--DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE 298
                    +D   +   E+ PL  S    L   + ++     Q         +     +
Sbjct: 376 GKHDLEIFPEDVAKIYYEEELPLFNSGSPILNRIDPYYDSAGRQGWVSTNKWPVFAEDGK 435

Query: 299 SFEYL-----SHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLT 352
           +   +        +           E     T D   +    V + G     N  F  + 
Sbjct: 436 TVTGIFGISRDISDFKRAEISLRLSEARYRATFDHAAVGIAQVSTDGVFLEINRVFCNII 495

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
            Y   + +        +     L+ + A    +L  +D            I+ +    + 
Sbjct: 496 GYTQSEVLSQHFSFGQITYPEDLASDMAQVQRLLSGADD---HYEMEKRYIRKDGG-IVW 551

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG 472
           +        +     +       +    +  + ++      L +I+      I I++ +G
Sbjct: 552 VNLSVALLRDTEGLALYFISSVVDITQRKQAEAQLLESEAHLRAIINNEPACIKIVDDQG 611

Query: 473 IILSTNRAVSKLFGYPV-EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
           I++  N A  ++        +  +P T  +              +++      L+   LG
Sbjct: 612 ILIQMNPAGLEMIEADSLAQVAGRPVTGVIAPEYREAFLQMHKRVIA-GESMQLKFEVLG 670

Query: 532 STKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
                ++L    +  +            DI+E ++ ++ L       ++ ++    F   
Sbjct: 671 LKGGRRMLETHAVPMEAYGKRVQLAVTRDITERQRIEDAL-------KRSNADLERFAYS 723

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           VSH++R PL A+ G  +++++     L     +   N+       +  ++  LLD S++ 
Sbjct: 724 VSHDMRQPLRAVSGHLQLLQHSLKEQLSEDDLLN-MNFALDGAKRMDSMIVSLLDYSRV- 781

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
            G+     + +     + EA+S +Q    E    +        P++ A    + ++  N+
Sbjct: 782 -GRKTGEKQGIESRAVLDEALSFLQPMIQESAAQVTFQ--GVWPQLFASRDELTRLFQNL 838

Query: 712 LSNAIHFTPSGGQIIIST-THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           + NAI F  SG   +I   +  +     + V+D GVG+   + ++  + F ++ +     
Sbjct: 839 IGNAIKFHESGQAPLIEIKSVVAKAMWRVSVKDHGVGIDPKQADRLFQFFSRLQSRTI-- 896

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFPLYDTSH 815
            EGTG+GL L + +V+ + G+ ++ S     G+      P+    H
Sbjct: 897 FEGTGMGLALCRRIVEHHDGRIWVESAGVGSGSTFIFELPVITHDH 942



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/387 (8%), Positives = 91/387 (23%), Gaps = 29/387 (7%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYA-FKMIGMRLCDVSDILHID-PNNHIGDLLKRQNT 142
           F +  D    ++  S+ L    G+    +MIG    ++               L    + 
Sbjct: 345 FIYFKDRDSRIRFCSQTLANITGHQNWREMIGKHDLEIFPEDVAKIYYEEELPLFNSGSP 404

Query: 143 -WYGKTTLWPIEGTNLYVPIDLAALPIYSRNR-EFSGFRGFGIVHVNRVDNDPRALGKRL 200
                   +   G      +     P+++ +    +G   FGI              +  
Sbjct: 405 ILNRIDPYYDSAGRQG--WVSTNKWPVFAEDGKTVTGI--FGISRDISDFKRAEISLRLS 460

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQS-------PPPHLRMKNKVSSLTEYYAHKDDV 253
           + ++    +      +                          +    S     Y      
Sbjct: 461 EARYRATFDHAAVGIAQVSTDGVFLEINRVFCNIIGYTQSEVLSQHFSFGQITYPEDLAS 520

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES----FEYLSHRNHP 309
              +   LL+  +     ++ +   +            L++    +       +      
Sbjct: 521 DMAQVQRLLSGADDHYEMEKRYIRKDGGIVWVNLSVALLRDTEGLALYFISSVVDITQRK 580

Query: 310 SLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
              A   E E      ++  P     V   G L   NP+ L + +  S+  +        
Sbjct: 581 QAEAQLLESEAHLRAIINNEPACIKIVDDQGILIQMNPAGLEMIEADSLAQVAGRPVTGV 640

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
           +      +       + +++      +   +   +         +               
Sbjct: 641 I------APEYREAFLQMHKRVIAGESMQLKFEVLGLKGGR-RMLETHAVPMEAYGKRV- 692

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLC 455
            Q  +  +  + +  +  ++     L 
Sbjct: 693 -QLAVTRDITERQRIEDALKRSNADLE 718



 Score = 74.7 bits (182), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 20/325 (6%), Positives = 78/325 (24%), Gaps = 20/325 (6%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLC--DVSDILHIDPNNHIGDLLKRQ--NTW 143
            +   G   EI+      IG    +++        ++    +  +      L     + +
Sbjct: 477 QVSTDGVFLEINRVFCNIIGYTQSEVLSQHFSFGQITYPEDLASDMAQVQRLLSGADDHY 536

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +      +G    V ++L+   +         F    +           A     +  
Sbjct: 537 EMEKRYIRKDGGI--VWVNLSVALLRDTEGLALYFISSVV--DITQRKQAEAQLLESEAH 592

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS----SLTEYYAHKDDVLKTEKY 259
              +   +     +  ++  +         +   + ++             +      + 
Sbjct: 593 LRAIINNEPACIKIVDDQGILIQMNPAGLEMIEADSLAQVAGRPVTGVIAPEYREAFLQM 652

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
                   S+  + +   +   +   + +   ++   K     L+     +     ++  
Sbjct: 653 HKRVIAGESMQLKFEVLGLKGGRRMLETHAVPMEAYGKRVQ--LAVTRDITERQRIEDAL 710

Query: 320 NLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
             +   +++       +       A    L L ++   + +     L+           +
Sbjct: 711 KRSNADLERFAYSV-SHDMRQPLRAVSGHLQLLQHSLKEQLSEDDLLNMNFALDGAKRMD 769

Query: 380 -----AIKPVMLYRSDRTCIAASAR 399
                 +    + R         +R
Sbjct: 770 SMIVSLLDYSRVGRKTGEKQGIESR 794


>gi|240138480|ref|YP_002962952.1| PAS/PAC sensor signal transduction histidine kinase (fragment)
           [Methylobacterium extorquens AM1]
 gi|240008449|gb|ACS39675.1| PAS/PAC sensor signal transduction histidine kinase (fragment)
           [Methylobacterium extorquens AM1]
          Length = 511

 Score =  320 bits (821), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 85/487 (17%), Positives = 185/487 (37%), Gaps = 28/487 (5%)

Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
           F +   G +   N     +  +   + I      S       ++       +   R    
Sbjct: 30  FMLDPQGRVTTWNAGAERIKGWHREEIIGR--HFSVFYPPEDVAAGKPTMELQTVRETGF 87

Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
                     ++ +  + +A         ++         +  +  + +     + +   
Sbjct: 88  ---YEEEGLRVRKDGSSFVA-HVTITPLPDEQGLLRGFAKVTRDVSERKAADEALRMREA 143

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
            L SILE   D + +I+++  I S + A  +LFGY  ED + +   + +        + Y
Sbjct: 144 HLRSILETVPDAMIVIDQQARIQSFSVAAERLFGYRAEDAIGQNIKILMPSPYREQHDGY 203

Query: 513 LTEILSLDLRQT--LEKITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEK 568
           +   LS   R+   + ++ +G  ++     + + I ++  +    ++  + D++E ++ +
Sbjct: 204 VARYLSTGERRIIGIGRVVVGQRRDGSTFPMELSIGEMQSAGGRFFTGFIRDLTERQETE 263

Query: 569 NKLSHAKKIAEKESS--HKSDFLARVSHEIRTPLTAIIGFSEVIKN--QRFGPLGNPRYI 624
            +L   +      S      +  + ++HE+  PLTAI  + +  +   +R      P   
Sbjct: 264 ARLQELQSELVHVSRLTAMGEMASTLAHELNQPLTAITNYLKGCRRLLERSEDEHAPTIR 323

Query: 625 EYANYIDRSGNLVLDIVNDLLDI-SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
           E  N+          I+  L +  S+ ES           L + + EA +L  +   E  
Sbjct: 324 EAVNHAADQAIRAGQIIRRLREFVSRGES-----EPHVHHLPKLIEEASALALIGTIENG 378

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ--IIISTTHTSNEEVILRV 741
           +        +    LAD   ++Q+ LN++ NAI       Q  ++++T   ++  V + V
Sbjct: 379 VRATFRLDPDADVALADRIQIQQVVLNLIRNAIEAMQDSSQRELVVATVARTDGMVEVSV 438

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            DTG G+      +  +PF            G G+GL + + +V+A+ G+ ++ S P KG
Sbjct: 439 SDTGTGIAPEVASQLFQPFVTTKRH------GMGVGLSICRTIVEAHGGRIWVESEPGKG 492

Query: 802 TLIEIIF 808
           T+     
Sbjct: 493 TVFRFTL 499



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 47/127 (37%), Gaps = 6/127 (4%)

Query: 458 LEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           ++A  D  + +++ +G + + N    ++ G+  E+I+ + F+VF      +     +  +
Sbjct: 21  IDAVRDVAVFMLDPQGRVTTWNAGAERIKGWHREEIIGRHFSVFYPPEDVAAGKPTME-L 79

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLS 572
            ++      E+  L   K+       + I  LP              D+SE K     L 
Sbjct: 80  QTVRETGFYEEEGLRVRKDGSSFVAHVTITPLPDEQGLLRGFAKVTRDVSERKAADEALR 139

Query: 573 HAKKIAE 579
             +    
Sbjct: 140 MREAHLR 146



 Score = 70.8 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 37/380 (9%), Positives = 93/380 (24%), Gaps = 26/380 (6%)

Query: 61  SVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCD 120
           +  + +   +      D +     F   +D  G +   +    +  G +  ++IG     
Sbjct: 6   APEHGSEGRAGAGLPIDAVRDVAVFM--LDPQGRVTTWNAGAERIKGWHREEIIGRHFSV 63

Query: 121 VSDILHIDPNNHIGDLLKRQNT--WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGF 178
                 +       +L   + T  +  +      +G++    + +  LP         GF
Sbjct: 64  FYPPEDVAAGKPTMELQTVRETGFYEEEGLRVRKDGSSFVAHVTITPLP--DEQGLLRGF 121

Query: 179 RGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLR 235
               +              +  +     + E       V  ++  I S           R
Sbjct: 122 AK--VTRDVSERKAADEALRMREAHLRSILETVPDAMIVIDQQARIQSFSVAAERLFGYR 179

Query: 236 MKNKV---SSLTEYYAHKDDVLKTEKYPLLTSEES--SLPEQEDFHTINLNQYTKKQYFG 290
            ++ +     +     +++         L T E     +         + + +  +   G
Sbjct: 180 AEDAIGQNIKILMPSPYREQHDGYVARYLSTGERRIIGIGRVVVGQRRDGSTFPMELSIG 239

Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLL 350
            +Q+     F                  E  +            V     +     +   
Sbjct: 240 EMQSAGGRFFTGFIRDLTERQETEARLQELQSEL--------VHVSRLTAMGEMASTLAH 291

Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA--RLHTIQWNRE 408
                         G   LL+  +      I+  + + +D+   A     RL       E
Sbjct: 292 ELNQPLTAITNYLKGCRRLLERSEDEHAPTIREAVNHAADQAIRAGQIIRRLREFVSRGE 351

Query: 409 NSLAMTFIPFEKANQFPENM 428
           +   +  +P          +
Sbjct: 352 SEPHVHHLPKLIEEASALAL 371


>gi|148656419|ref|YP_001276624.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp.
           RS-1]
 gi|148568529|gb|ABQ90674.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp.
           RS-1]
          Length = 905

 Score =  320 bits (821), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 99/435 (22%), Positives = 192/435 (44%), Gaps = 34/435 (7%)

Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
             +   T  +  E+   +T    + A           +E +       ++  E  V Q  
Sbjct: 486 VLSHEQTGYFRDEHLRLLTAAANQIAIGIYNAQMYQQVEQQYWRRYEMQQLQEKAVSQST 545

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY-LT 514
           +IL++ SDG+ + ++ G +++ N A  K+   P+++++       L +     ++   L 
Sbjct: 546 AILQSLSDGVIVCDQNGAVITVNLAAEKILDRPIDELVTWNLGDLLRRLLGRRVSELPLE 605

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNK 570
           ++L+    +     TL +T +    ++ + +  +  +            D +        
Sbjct: 606 DLLAHPWDERARPRTLSTTFQLGPRTISVTLDPVISTKEELLGAVAVFRDRTR------- 658

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
                    +    K++F+  VSHE+RTP+T+I GF++++     GP+ N    E+ N I
Sbjct: 659 -------EVESDRLKTEFIGTVSHELRTPMTSIKGFTQLLVMGNLGPV-NETQREFLNII 710

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
             +   ++ I+NDLLDI+KIE+G + L   P+ + E +S+ +  +Q   +E++  +  S 
Sbjct: 711 QSNAERMIAIINDLLDITKIETGSVELEIRPIHVAETLSKVLLDLQTKVHERQQTLTLSL 770

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT--------------HTSNEE 736
              +P + AD     QI  N++SNA+ +TP GG I I                       
Sbjct: 771 PAGLPLVRADAHRFNQILFNLVSNAVKYTPRGGSITIEAREVTAEAVPEDERDGLRPGRY 830

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           + + VRDTGVG+   ++ +  + F +  N  ++   GTGLGL L K +V    G+ ++ S
Sbjct: 831 IQIDVRDTGVGIAPDDVPRIWERFYRTENPLKVEAGGTGLGLSLVKPLVRLLGGRIWVES 890

Query: 797 TPAKGTLIEIIFPLY 811
               G+    + P  
Sbjct: 891 RINVGSTFSFVLPAA 905


>gi|119715576|ref|YP_922541.1| PAS/PAC sensor signal transduction histidine kinase [Nocardioides
           sp. JS614]
 gi|119536237|gb|ABL80854.1| PAS/PAC sensor signal transduction histidine kinase [Nocardioides
           sp. JS614]
          Length = 682

 Score =  320 bits (821), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 93/510 (18%), Positives = 187/510 (36%), Gaps = 46/510 (9%)

Query: 344 ANPSFLLLTKYKSVD--------DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIA 395
             P F  L  +  +          + I      +           +   +L         
Sbjct: 170 VVPFFCRLRNHAPLAGPTERLAQWLLILTITPAVFVPQDFPSVVFLVVPVLVWGAMRSSP 229

Query: 396 ASARLHTIQ----------WNRENSLAMTFIPFEKANQFPENMPQNGIE---------PE 436
             A    I           W                +     +   G+            
Sbjct: 230 YEALAQLITTLGFAIPLTTWGHGPFADAGPRFQMSVDGQGILLATYGVVCALVVIPLVLT 289

Query: 437 DVDTRINKRKMEIEVMQLCSILE-ATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
             +   + R+   E  ++ +I+       I   +  G +   N    +L GY  +++L +
Sbjct: 290 VSEQLEHARQAAAERDKVQNIVNGTAGVAIIGTDEHGRVTLFNPGAERLLGYRADEVLGR 349

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQT-----LEKITLGSTKEEKLLSLRIIIKKLPF 550
               F   +  S     L       +                 K+ +  S  + + ++  
Sbjct: 350 LIREFHSADAISEKAAELGVAADFGVVARSLIGQGATDMRFLRKDGEERSHSMSLNRIED 409

Query: 551 SSC----YSLTMHDISEWKQEKNKLSHAKKIAEKE-------SSHKSDFLARVSHEIRTP 599
                  Y  T  DI+E  + + +L  A +   +           K  F++ VSHE+RTP
Sbjct: 410 DRGRVIGYVSTSEDITERVEAEGRLVEALETERQAVERLREVDQVKDAFVSSVSHELRTP 469

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           +T+I+G++E++++  +G LG    ++    +  +   +L ++NDLL +S+++  ++ +  
Sbjct: 470 ITSILGYTEMLEDGVYGDLGRE-QLDAVRRVAANSTRLLSLINDLLTLSRVQEDEIGIVD 528

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719
               L   VS   ++V      + + +     +     L D   ++++ +N+  NA  FT
Sbjct: 529 RVFDLRSVVSAGTAVVAPTLERRSLELTAELPDEPVPFLGDRDMLERVVINLAGNAAKFT 588

Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
           P GG+I +       E V + V DTG+G+ + E E+    F +   +Q+    G+GLGL 
Sbjct: 589 PEGGRIGVRLLVGPEESV-IEVSDTGIGIPHQEQERLFSRFFRSSLAQERAIPGSGLGLS 647

Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +A A+V+ + G   + S P +GT   +  P
Sbjct: 648 IAHAIVEKHGGTMSVDSEPGEGTTFRVHLP 677



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/260 (8%), Positives = 62/260 (23%), Gaps = 20/260 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH---IGD---LLKRQNT 142
            D HG +   +    + +G  A +++G  + +      I        +     ++ R   
Sbjct: 322 TDEHGRVTLFNPGAERLLGYRADEVLGRLIREFHSADAISEKAAELGVAADFGVVARSLI 381

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
             G T +  +          ++   I        G+             +         +
Sbjct: 382 GQGATDMRFLRKDGEERSHSMSLNRIEDDRGRVIGY--VSTSEDITERVEAEGRLVEALE 439

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
                 E  +    V+       S +   P   +      L +         + +    +
Sbjct: 440 TERQAVERLREVDQVKDAFVSSVSHELRTPITSILGYTEMLEDGVYGDLGREQLDAVRRV 499

Query: 263 TSEESSL----PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
            +  + L     +      +  ++         L++        ++            E 
Sbjct: 500 AANSTRLLSLINDLLTLSRVQEDEIGIVDRVFDLRSVVSAGTAVVAPTLERRSLELTAEL 559

Query: 319 ENLTPETVDKCPIPFFVYSH 338
            +         P+PF     
Sbjct: 560 PDE--------PVPFLGDRD 571


>gi|288933363|ref|YP_003437422.1| multi-sensor hybrid histidine kinase [Klebsiella variicola At-22]
 gi|288888092|gb|ADC56410.1| multi-sensor hybrid histidine kinase [Klebsiella variicola At-22]
          Length = 779

 Score =  320 bits (821), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 86/435 (19%), Positives = 177/435 (40%), Gaps = 16/435 (3%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L            +L  +Q     +     I   +  +         ++ E
Sbjct: 81  EESRQRLSRLVDKLEEMRERDLKL-NVQLKDNIAQLNQEIGEREKAEAERETTLEQLKIE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             +    + ++E +   L S L+A+ D +   N +      NRA+  L G   + ++   
Sbjct: 140 MKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLIHLK 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCY 554
                       +     ++   ++  T E+        +    +R +    ++      
Sbjct: 200 PQDVYSGEAAEKVLETDEKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRRGL 259

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+        +   E+ S  K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 260 MGFGRDITERKR-------YQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE 312

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     +Y   I  S   + +I ND++D+ K+E  K+ L  +PV     +++  +L
Sbjct: 313 LTS----EQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENL 368

Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
             L A +K +      +  +P  ++ D   ++QI  N++SNA+ FTP GG + +   +  
Sbjct: 369 SGLQAQQKGLRFVLEPSLPLPHKVITDGTRLRQILWNLISNAVKFTPQGGGVNVRVRYDE 428

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMGKF 792
            + +   V D+G+G+   E +K    + Q+ +S   +   GTG+GL +++ +     G  
Sbjct: 429 GDILHFEVEDSGIGIPEAEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLARNMGGDI 488

Query: 793 YIFSTPAKGTLIEII 807
            + S P KG    + 
Sbjct: 489 SVTSQPGKGATFTLT 503


>gi|146284300|ref|YP_001174453.1| hypothetical protein PST_3988 [Pseudomonas stutzeri A1501]
 gi|145572505|gb|ABP81611.1| conserved hypothetical protein [Pseudomonas stutzeri A1501]
          Length = 797

 Score =  320 bits (821), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 120/721 (16%), Positives = 235/721 (32%), Gaps = 59/721 (8%)

Query: 105 TIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLA 164
            +G    + I  RL D      +     + D +++            +      + ++  
Sbjct: 1   MLGEKVTEAIRKRLRD--HEQILLGGAGLFDAVEQ------------VSREQWRLYVERL 46

Query: 165 ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDI 224
           AL        + G +G G     R       + +   + F+        H + E+E Y  
Sbjct: 47  ALAER-----YPGIQGVGFTQAIRPAERAAHVARIRSQGFADY----DIHPAGERELYTS 97

Query: 225 FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYT 284
                P     +      +      +  + +  +    +        QE   T+      
Sbjct: 98  IIFLEPFSGRNLAAFGYDMYAEPIRQQAMQRAAQLGETSITGKVTLVQETHGTVQAGVLL 157

Query: 285 KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYA 344
                      S       +           D+         D  P+   +Y+      A
Sbjct: 158 YVPVHRPHLPTSTPDERMQALLGFVYSPYRVDDLMRGILRAAD-LPLALHIYAS-----A 211

Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
           + +   L           +   S L            +   L    R         +   
Sbjct: 212 DEAPEHLLHASREAPAPGSARYSAL-----QRLELYGQTWTLRMDSRPEFEDRFHANEAL 266

Query: 405 WNR-ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
                  L++       +        Q   E      R ++  + +   +L   L+ ++D
Sbjct: 267 VFGLGVGLSLLVFFLTSSLALRHGRAQALAEEMTRHIRQSRHDLRLSEERLSLALKGSND 326

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEILSLDL 521
           G+  ++ E   +  +    ++ GY   ++    K +         +     L + +  ++
Sbjct: 327 GLWDLDLEAGSMYASPRAWEMLGYRPNELPCDLKLWERVTVAEDLAQQKARLAQTMLANV 386

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKI 577
                       K   ++ + +               S T+ D++E K+ +         
Sbjct: 387 DH-FTTELRLLHKHGHVVPVLLRGYIQRDPQGMAQRISGTLMDLTERKRIE--------- 436

Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
                  K+DF++ VSHE+RTPLT+I G   +I     G    P   +       +   +
Sbjct: 437 -----QMKNDFVSTVSHELRTPLTSISGALGLIVGGALGKAP-PSMQQMLEIAYSNSLRL 490

Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697
             ++NDLLD+ KI +GKM+      SL E + E+++  Q   ++  +      A ++ R+
Sbjct: 491 GHLINDLLDMEKIAAGKMSFELREHSLGELLKESLASNQALCDQHGVRCSLEHATDV-RV 549

Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757
             D   ++Q+  N LSNA  FTP+GG I + ++    + V + V D G G+      +  
Sbjct: 550 WVDGMRLQQVLGNFLSNAFKFTPAGGHIRVHSSLR-GQRVRISVTDQGPGIPEAFRSRVF 608

Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
           + F Q   S   +  GTGLGL + K +++   G       P +GT      P+   S   
Sbjct: 609 EKFAQADASDSRQKSGTGLGLAITKELIERMGGTVGFDCEPGQGTTFWCELPIQLPSAET 668

Query: 818 D 818
           D
Sbjct: 669 D 669



 Score = 39.2 bits (90), Expect = 3.0,   Method: Composition-based stats.
 Identities = 13/114 (11%), Positives = 26/114 (22%), Gaps = 8/114 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKM--IGMRLCDVSDILHIDPNNHIGDL--LKRQN 141
            W++D        S    + +G    ++         V+    +           L   +
Sbjct: 328 LWDLDLEAGSMYASPRAWEMLGYRPNELPCDLKLWERVTVAEDLAQQKARLAQTMLANVD 387

Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA 195
            +  +  L    G    VP+ L               R  G +           
Sbjct: 388 HFTTELRLLHKHGH--VVPVLLRGYIQRDPQG--MAQRISGTLMDLTERKRIEQ 437


>gi|16330477|ref|NP_441205.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
 gi|1652968|dbj|BAA17885.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
          Length = 1014

 Score =  320 bits (821), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 97/427 (22%), Positives = 177/427 (41%), Gaps = 71/427 (16%)

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF--GYPVEDILRK 495
           ++       +     +L  +++    G+ + + +G I+  N   ++LF  G+P + +L K
Sbjct: 149 LEQARTAEALACTSTRLGILVQNMQAGVLMTDAQGTIVVVNPEFARLFNLGFPADLLLGK 208

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK----------ITLGSTKEEKLLSLRIII 545
             T          +   +  ++S     T                 + ++ +      + 
Sbjct: 209 NLT---------AIAPRINGLISHGQGVTHNFLAIESPEPLLKVELALEDGRFFERDYVP 259

Query: 546 KKLPFS-SCYSLTMHDISEWKQEK---------------------NKLSHAKKIAEKESS 583
             L  S   +     DIS+ KQ +                      +L  A   AE  + 
Sbjct: 260 IMLGDSSQGHFWLYRDISQRKQVEMIQGQSLEMERRMRQQLAEQNQELVAATTAAEAANR 319

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
            KS+FLA +SHEIRTP+ AIIG + ++ +         +   +A  I  SG  +L ++ND
Sbjct: 320 SKSEFLATMSHEIRTPMNAIIGMTGLLLDTDLTT----QQKYFAQTIRNSGETLLTLIND 375

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL-IRTSFANNIPRILADLR 702
           +LD SKIE+GK++L   P  L + + EA+ +V   A +K +  IR       P +  D+ 
Sbjct: 376 ILDFSKIEAGKLDLEVYPFDLGQCLEEALDVVVPSARQKSLTLIRRFLTPIPPNLQGDVT 435

Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNE------EVILRVRDTGVGMTNYELEKA 756
            ++QI +N+LSNA+ FT +G Q+ ++     ++      ++   V+DTG+G+   + +  
Sbjct: 436 RLRQILVNLLSNAVKFTEAG-QVKVTVEVVDHDAAKGEYQICFAVQDTGIGIAPNQQQAL 494

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS---TPA-------------K 800
            + F Q  +S   R  GTGLGL +   +     G  +  S                   +
Sbjct: 495 FQAFSQGNSSITRRFGGTGLGLAICVRLTALMGGTIWAESNGCVVGNPPELWQIGQPTIE 554

Query: 801 GTLIEII 807
           G+     
Sbjct: 555 GSTFYFT 561



 Score = 40.4 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 8/40 (20%), Positives = 19/40 (47%), Gaps = 2/40 (5%)

Query: 89  IDAHGYLKEISEELPKT--IGNYAFKMIGMRLCDVSDILH 126
            DA G +  ++ E  +   +G  A  ++G  L  ++  ++
Sbjct: 179 TDAQGTIVVVNPEFARLFNLGFPADLLLGKNLTAIAPRIN 218


>gi|163739314|ref|ZP_02146725.1| sensor histidine kinase/response regulator [Phaeobacter
           gallaeciensis BS107]
 gi|161387384|gb|EDQ11742.1| sensor histidine kinase/response regulator [Phaeobacter
           gallaeciensis BS107]
          Length = 764

 Score =  320 bits (820), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 106/454 (23%), Positives = 196/454 (43%), Gaps = 22/454 (4%)

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
           L+D    +      ++R      A L           A+       A Q      ++   
Sbjct: 3   LADRLTEERRARLAAERLLELKQAELSAANRKLGR-HALALTRQIGATQAEVATVRDENA 61

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
               D      K+E    +L   ++A  DG A  + +  ++  N A   LF    E    
Sbjct: 62  KVKSDLSTANEKVERAERRLWHSIQAFQDGFAFFDADSKLIGANTAYLDLFDGLEEVTPG 121

Query: 495 KPFTVFLEQ-------NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
             +   L+        NT      +    +S        +  +    +++ L L   + +
Sbjct: 122 VSYVRILQILTDEGLVNTGEQDPDHWRAQMSERWLSPSPEPVVVRMWDDRYLRL---LDQ 178

Query: 548 LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
                       DI+   Q + +L  A++ AE  +  KS FLA +SHEIRTP+  ++G +
Sbjct: 179 RGHGGDMVSLALDITSTVQYEEELQAARERAEAANRAKSAFLANMSHEIRTPMNGVVGMA 238

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
           E++ +       +     YAN I  SG  +L I+ND+LD SKIE+ K+ LH EP  L+ +
Sbjct: 239 ELLSDTNL----SDEQQLYANTIKNSGEALLVIINDVLDYSKIEAQKLELHPEPFDLERS 294

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII 726
           V E + L+Q  A +K + +   +   +P   + D   ++Q+  N++ NA+ FT  G   +
Sbjct: 295 VHEVLMLLQPTARDKGLTLLLDYDLFLPTSFVGDPGRIRQVLTNLVGNAVKFTSEGHVAL 354

Query: 727 ISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
             T  ++  +    + + + DTG+G+   +++     F Q+ + +  + EGTGLGL ++K
Sbjct: 355 QITGISNAGDKICSIHVTIEDTGIGIPEEKVQDIFGEFNQVEDERNRQFEGTGLGLAISK 414

Query: 783 AMVDANMGKFYIFSTPAKGTL--IEIIFPLYDTS 814
            +++   G+ ++ S   KG+     +  PL + +
Sbjct: 415 RLIELMGGEIWVESQEGKGSCFGFRMELPLAEGA 448


>gi|329851250|ref|ZP_08266007.1| sensory box protein [Asticcacaulis biprosthecum C19]
 gi|328840096|gb|EGF89668.1| sensory box protein [Asticcacaulis biprosthecum C19]
          Length = 799

 Score =  320 bits (820), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 103/567 (18%), Positives = 210/567 (37%), Gaps = 32/567 (5%)

Query: 272 QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI 331
                         K        +S  +    +  N   + A  +E +       D   +
Sbjct: 112 DRVARADFGANEALKLEKLAAAVSSVMAMRKDAMANIAIMRAR-EEDQKTLELVEDIAGV 170

Query: 332 PFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389
             + +    G + +++  F  +      +       +  L D      +   + V     
Sbjct: 171 GQWSFDVKSGRVVWSDQVF-RIHGLPITESAPDYSDVLALYDE--NDASTLARLVERAAK 227

Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449
                   AR   I+        +            +    +G+  +  D R+   K   
Sbjct: 228 TGKGYTLEAR---IRRPNGAFRNVVAKAETLRGADGDVETIHGVFQDVTDYRMATEKARK 284

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
              +   +       +   + +      N A  + FG   ++++       L +   ++ 
Sbjct: 285 SEARYRLLASNMPGMLGHWDSDLKCRFANNAYLEWFGRTPDELIGVHLKTVLGEELFALN 344

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII-IKKLPFSSCYSLTMHDISEWKQEK 568
             ++   LS + +     I+  S      L+  +  + +      + + + DI++ K ++
Sbjct: 345 EPFIRRALSGEKQTFERAISKASGALGYTLTQYLPDLDEDGRVRGFFVLVTDITDLKLKE 404

Query: 569 -------NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
                   +L  A+  AE     K+ FLA +SHEIRTPLT I+G++ ++  Q      + 
Sbjct: 405 LALSDSNAQLIAARHQAEAALEIKAQFLATMSHEIRTPLTTILGYAGLLGEQDD---LSQ 461

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
               +   I ++G  +L ++ND+LD+S++E+G++ L  + V++ E   E +   Q+ A+ 
Sbjct: 462 EAAAFVKRIGKAGRTLLALINDVLDVSRLEAGQVTLTQQAVNVHELARELVEQFQMQAST 521

Query: 682 KRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN---EEV 737
           + + +   +   +P   L D   + Q+  N++ NA  FT  G  I IS     N     +
Sbjct: 522 RNLKLNLDYDEELPEWQLIDDTRLTQVLNNLVGNACKFTSDG-VISISMRAVENLAGTRM 580

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
            + V D G G+T  +  K  K F Q+      +  G+GLGL +   ++    G+  + S+
Sbjct: 581 RVEVGDPGPGLTTEQTGKLFKRFQQLDAGINRKHGGSGLGLAICAEIIKLMQGEIGVVSS 640

Query: 798 PAKGTLIEIIFPL-------YDTSHPH 817
              G+      PL        D+  PH
Sbjct: 641 VTAGSTFWFEVPLTMAAPVYVDSEEPH 667



 Score = 42.7 bits (99), Expect = 0.26,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 62/241 (25%), Gaps = 10/241 (4%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS-DILHIDPNNHIGDLLKRQNTWYG 145
           W+ D        +    +  G    ++IG+ L  V  + L       I   L  +     
Sbjct: 303 WDSDLKCRF--ANNAYLEWFGRTPDELIGVHLKTVLGEELFALNEPFIRRALSGEKQ-TF 359

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +  +    G   Y       LP    +    GF  F +V                + +  
Sbjct: 360 ERAISKASGALGYTLTQ--YLPDLDEDGRVRGF--FVLVTDITDLKLKELALSDSNAQLI 415

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
                 +    ++ +     S +   P   +      L E      +     K       
Sbjct: 416 AARHQAEAALEIKAQFLATMSHEIRTPLTTILGYAGLLGEQDDLSQEAAAFVKRIGKAGR 475

Query: 266 E--SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
              + + +  D   +   Q T  Q    +   ++E  E    +          + +   P
Sbjct: 476 TLLALINDVLDVSRLEAGQVTLTQQAVNVHELARELVEQFQMQASTRNLKLNLDYDEELP 535

Query: 324 E 324
           E
Sbjct: 536 E 536


>gi|300088403|ref|YP_003758925.1| multi-sensor signal transduction histidine kinase [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299528136|gb|ADJ26604.1| multi-sensor signal transduction histidine kinase [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 443

 Score =  320 bits (820), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 90/449 (20%), Positives = 190/449 (42%), Gaps = 36/449 (8%)

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
            G   TLL A   +       + L     T   A   L   +     +      P +   
Sbjct: 28  RGFSVTLLIAGIAAAVAVAVTIYLMVPSTTDDEAEIELALKRLGGGEA------PEKVRL 81

Query: 423 QFPENMPQNGIEPEDVDTRI--NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
                +        ++  ++    + +  E  ++  +L    D I ++++   I   N A
Sbjct: 82  VAIGELADIKHAFNEMARKVGGRLKTLTAERNRMDLVLAHVGDAIFMVDKNTEITHLNDA 141

Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
             ++F    ++   + F   +  +    M   + + ++   RQ  E  +    ++     
Sbjct: 142 AVRMFHLDKKE-KGQTFMSAVRNH---EMEEMIRKCVATGRRQEKEIESRPGRRQ----- 192

Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
             + +  +   S   + + D++  K+ +                + DF+A +SHE+RTP+
Sbjct: 193 YSVTVTPIHNESGAVIVVRDLTNLKRLETV--------------RRDFVANISHELRTPI 238

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
            ++   +E +K             ++ N I    + +  +V++L ++S+IESG   L   
Sbjct: 239 ASLKLLAETLKEGAMA--DQEVAADFLNRISVEADKMGQLVDELGELSRIESGAAPLDKR 296

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720
           P+     ++  +  +Q  A+  ++ +  +  + +P + AD   ++Q+ +N+  NAI FTP
Sbjct: 297 PMDAGAVMTTVVGRLQNQADRAKLTLEVATVDGLPAVRADAGRIEQVLMNLTHNAIKFTP 356

Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
           +GG+I ++   +    + ++V DTG G+T  +L +  + F +   ++   G GTGLGL +
Sbjct: 357 AGGRITLTAGISEKG-IEIKVTDTGAGITADDLPRIFERFYKADKARS--GGGTGLGLAI 413

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           AK +V A+ G+    S+P +GT I    P
Sbjct: 414 AKHIVHAHGGEIRAESSPGQGTTISFTLP 442


>gi|197104629|ref|YP_002130006.1| sensor histidine kinase/response regulator [Phenylobacterium
           zucineum HLK1]
 gi|196478049|gb|ACG77577.1| sensor histidine kinase/response regulator [Phenylobacterium
           zucineum HLK1]
          Length = 802

 Score =  320 bits (820), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 105/653 (16%), Positives = 204/653 (31%), Gaps = 36/653 (5%)

Query: 167 PIYSRN-REFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF 225
           P++ R  R      G  +     +               +       G   + +    ++
Sbjct: 20  PVFDRATRLLRTLFGGDVEAQITLVEGEGEGVWHSRGGGTPSAAQAAGVRELMRTGAPVW 79

Query: 226 SQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTK 285
           S+        + +  S +   Y               T     +   E      +     
Sbjct: 80  SEDCREDPRFLDD-ASVVGPPYVRFFAAAPIRLEDGSTPGALWVGGLEPRPYDRVLAARL 138

Query: 286 KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYA 344
           +    T+ +      E  + R +          E      ++  PI          + YA
Sbjct: 139 QDLADTVADEWARLRETDARRTY----------EKTLNAIIEALPISLVLTDREMRVLYA 188

Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
           +P ++               G +     P + +           +             + 
Sbjct: 189 SPPWITGRGL----AGRQVTGKTLYELRPDMFEQWREGLEAAVAA---GTGYKLDRRALP 241

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
               +   + F      +   +         +  +      + E    +L   ++     
Sbjct: 242 GPDGSVEWVKFEVTPWRDTEGQVGGLILASYDITEMVEALERTERSEERLRIAMQIADLH 301

Query: 465 IAIINREGIILSTNRAVSK-LFGYPVEDI-LRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522
           +  ++       T        F  P     L       ++    + +       +     
Sbjct: 302 VYELDYVRR-ELTKVGAEDTFFDRPRTYADLAANIWNAIDPRDVAKVQAAWKAHVRDGAP 360

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIA 578
                       + + +      +               M +++  K ++  L  AK+ A
Sbjct: 361 YYP--EYRLRRGDGREVWAAGTARLTTGEDGRPLRLVGAMQNVTVRKAQERALVRAKEEA 418

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
           E  +  KS FLA +SHEIRTPL  ++G ++ +      P       E  + I +SG  +L
Sbjct: 419 EAANRAKSAFLATMSHEIRTPLNGVLGMAQAMAMDELSPA----QRERLDVIRQSGESLL 474

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
            I+ND+LD+SKIE+GK++L      ++E V    +     A  K +    + A N   + 
Sbjct: 475 AILNDVLDLSKIEAGKLDLEEAEFDVEELVRTVHATFAAVAEAKGLGFEIAVARNARGLY 534

Query: 699 -ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757
             D   V+QI  N++SN + FT  G  + +     +   +   VRDTG+G+   +L    
Sbjct: 535 RGDPIRVRQILWNLVSNGLKFTDRGA-VEVRVR-RAQGLLAFEVRDTGIGIAPEQLANLF 592

Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           + F Q   S   R  GTGLGL + + +     G+    S   +G    +  PL
Sbjct: 593 RKFEQADASTTRRFGGTGLGLAICRELAGLMGGEIAAESARGQGARFTVSLPL 645



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/321 (8%), Positives = 82/321 (25%), Gaps = 18/321 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            D    +   S       G    ++ G  L ++   +       +   +     +     
Sbjct: 179 TDREMRVLYASPPWITGRGLAGRQVTGKTLYELRPDMFEQWREGLEAAVAAGTGYKLDRR 238

Query: 149 LWP-IEGTNLYVPIDLAALPIYSRNREFSG--FRGFGIVHVNRVDNDPRALGKRLDKKFS 205
             P  +G+  +V  ++   P      +  G     + I  +           +RL     
Sbjct: 239 ALPGPDGSVEWVKFEV--TPWRDTEGQVGGLILASYDITEMVEALERTERSEERLRIAMQ 296

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY-PLLTS 264
                      V +E   + ++ +     R    +++         DV K +        
Sbjct: 297 IADLHVYELDYVRRELTKVGAEDTFFDRPRTYADLAANIWNAIDPRDVAKVQAAWKAHVR 356

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
           + +    +      +  +                    +    + ++    +       E
Sbjct: 357 DGAPYYPEYRLRRGDGREVWAAGTARLTTGEDGRPLRLVGAMQNVTVRKAQERALVRAKE 416

Query: 325 TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
             +                A  +FL    ++    +    G++  +   +LS     +  
Sbjct: 417 EAEAAN------------RAKSAFLATMSHEIRTPLNGVLGMAQAMAMDELSPAQRERLD 464

Query: 385 MLYRSDRTCIAASARLHTIQW 405
           ++ +S  + +A    +  +  
Sbjct: 465 VIRQSGESLLAILNDVLDLSK 485


>gi|86148693|ref|ZP_01066971.1| sensory box histidine kinase/response regulator [Vibrio sp. MED222]
 gi|85833512|gb|EAQ51692.1| sensory box histidine kinase/response regulator [Vibrio sp. MED222]
          Length = 1462

 Score =  320 bits (820), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 89/402 (22%), Positives = 181/402 (45%), Gaps = 29/402 (7%)

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI----------INREGIILSTNRAVS 482
           +  E    +I +++ +     L ++ +   DG+ +          ++        +  VS
Sbjct: 563 MAAEIEQRKIAEQRAKAAEAHLQTLADNI-DGVVLKHIQTHPRQPLDI--RFSFVSAGVS 619

Query: 483 KLFGYPVEDI--LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
            +FG  V+++    +     + ++        + E +        E       +  +   
Sbjct: 620 DMFGLSVDNVKEHPQHLFNLISEDDLPQFETSMLEAIETGH---WENEQRMQLESGQTKW 676

Query: 541 L-RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
           +          +  ++  + DI+  K+++  L +A++ AE+ ++ KS FLA +SHE+RTP
Sbjct: 677 VKFNSQVSNSKTIEWNTVITDITLLKKQQQALDNARQKAERATAAKSQFLATISHEVRTP 736

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           ++ I+G  E+++  +     +   +     +++S   +L IVND+LD SKIE+GK++L+ 
Sbjct: 737 ISGILGLLELMQEHQL----SEELLNLHGGLNQSARNLLHIVNDVLDYSKIEAGKLDLNP 792

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHF 718
             + L + ++  +    ++A +K +        N+   + AD   + QI  N L+NAI F
Sbjct: 793 TEIELGKVLARIVQPQSIHAQQKGLAFHYWQDPNLAQWLFADDIRLHQILNNFLNNAIKF 852

Query: 719 TPSGG---QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T  G     I +   +   ++V L V DTG+G+     +   +PF Q+  +   R  GTG
Sbjct: 853 TEHGTISLHIDVIEQNEHQQKVSLTVSDTGIGIPKDRQQSLFQPFEQVDKTTSRRFGGTG 912

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGT--LIEIIFPLYDTSH 815
           LGL +A  +++   G   + S   KG+   + +  P     H
Sbjct: 913 LGLSIALKLIEQMDGNIELSSEEGKGSHFTVTVTLPTCTPEH 954


>gi|110598538|ref|ZP_01386807.1| PAS:ATP-binding region, ATPase-like:Histidine kinase, HAMP
           region:Histidine kinase A-like [Chlorobium ferrooxidans
           DSM 13031]
 gi|110339842|gb|EAT58348.1| PAS:ATP-binding region, ATPase-like:Histidine kinase, HAMP
           region:Histidine kinase A-like [Chlorobium ferrooxidans
           DSM 13031]
          Length = 596

 Score =  320 bits (820), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 87/401 (21%), Positives = 186/401 (46%), Gaps = 29/401 (7%)

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
           IP ++ ++            +++      +KM        ++     + I + +  G I+
Sbjct: 218 IPVDRQDEIGMLARAFNTMSDEI------KKMRRSEEWFRAVFSGIREAIIVTDAAGDII 271

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
             N A S++F         +P        + S +    + +    L    E++   +TK 
Sbjct: 272 LVNPAASRIFRIEGAMFKSRPLRHL----SDSRLEELFSRVHKSHLALIKEEMAFETTKG 327

Query: 536 EKLLSLR-IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
            +++ +  + + +          ++DI++ +  +                + DF++ VSH
Sbjct: 328 RRIMQISSMPVMQGERFDGTVFVLNDITKLRNLE--------------RVRRDFVSSVSH 373

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           E+RTPLT+I G++E +         +     +   I +    +  +VND+LD+S+IESG+
Sbjct: 374 ELRTPLTSIKGYTETLLEGAMHEPEHASA--FLKIILQESEQLTALVNDVLDLSRIESGR 431

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714
           +  HF  V L   +++++  ++L   +K + +  S A+++P++ AD   ++ +  N+L N
Sbjct: 432 IEYHFSAVDLRTVIAKSVDQLRLALEKKAVRLDVSIADDMPQLHADSGYLEIVVRNLLDN 491

Query: 715 AIHFTP-SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
           AI +     G+I IS    + + V L V D G+G++  +L +  + F ++  ++     G
Sbjct: 492 AIKYVDAEHGKIRIS-AFRNGDFVQLDVEDNGIGISKQDLGRIFERFYRVDKARSRELGG 550

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           TGLGL + K +V A+ G   + S  ++G++  ++FP+   S
Sbjct: 551 TGLGLAIVKHIVLAHKGHVEVRSRVSQGSVFSVLFPVVADS 591


>gi|27375770|ref|NP_767299.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
           USDA 110]
 gi|27348908|dbj|BAC45924.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
           USDA 110]
          Length = 743

 Score =  320 bits (820), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 97/374 (25%), Positives = 163/374 (43%), Gaps = 18/374 (4%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           +++    +  S+ E   D I + + +  I   N A   L G     ++   F   + +  
Sbjct: 104 ELKEAEERARSLFEQQGDLIVLRDHQNRITFANDAYCALAGQARGALVGTRFDFDVLEQG 163

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISE 563
            S      T +    +   L           + ++ R    +L             D+++
Sbjct: 164 DSARESSGTRVHDQKIATPLGA---------RWIAWREGYVRLDAGQPAELQSVGRDVTD 214

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + +  LS A+  A+  +  KS FLA  SHEIRTPL  IIG   ++ +    P      
Sbjct: 215 RTETERALSDARDQADAANRAKSRFLAMASHEIRTPLNGIIGMGGLLLDTTLTP----EQ 270

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
             YA  +  SG  ++ ++ +LLD SKIE+GK++L   P +L   + E   L+   A  K 
Sbjct: 271 ATYAKAVKTSGEALMALIEELLDYSKIEAGKLDLEQRPFALSTLIEEITELLAPRAQAKT 330

Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVILRV 741
           + I       +P  ++ D   ++Q+ LN+  NAI FT SGG  +I+      N E+   V
Sbjct: 331 LEIAAYVDERLPLEVVGDAARLRQVLLNLAGNAIKFTASGGVALIVEPGIRPN-EISFLV 389

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
           RDTG+G+     ++  + F Q          GTGLGL +++ +V    G+  + S P KG
Sbjct: 390 RDTGIGIAAEAQQRIFREFEQADERVARTYGGTGLGLAISERIVKRMGGRITLASEPGKG 449

Query: 802 TLIEIIFPLYDTSH 815
           +  E+  PL  +  
Sbjct: 450 STFEVAVPLAPSEA 463



 Score = 38.5 bits (88), Expect = 4.4,   Method: Composition-based stats.
 Identities = 35/316 (11%), Positives = 71/316 (22%), Gaps = 37/316 (11%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D    +   ++      G     ++G            D         +   T      +
Sbjct: 127 DHQNRITFANDAYCALAGQARGALVG-------TRFDFDVLEQGDSARESSGTRVHDQKI 179

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
               G       +     +     + +  +  G         +          +    + 
Sbjct: 180 ATPLGARWIAWREGY---VRLDAGQPAELQSVG--RDVTDRTETERALSDARDQADAANR 234

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
            K    ++   +          P   +      L +     +     +          +L
Sbjct: 235 AKSRFLAMASHEIR-------TPLNGIIGMGGLLLDTTLTPEQATYAKAVKTSGEALMAL 287

Query: 270 -PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
             E  D+  I   +   +Q    L    +E  E L+ R            +       ++
Sbjct: 288 IEELLDYSKIEAGKLDLEQRPFALSTLIEEITELLAPRAQAKTLEIAAYVD-------ER 340

Query: 329 CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388
            P+   V     L         L           A G   L+  P +  N       L R
Sbjct: 341 LPLEV-VGDAARLRQV------LLNLAGNAIKFTASGGVALIVEPGIRPNEIS---FLVR 390

Query: 389 SDRTCIAASARLHTIQ 404
                IAA A+    +
Sbjct: 391 DTGIGIAAEAQQRIFR 406


>gi|323138125|ref|ZP_08073198.1| multi-sensor signal transduction histidine kinase [Methylocystis
           sp. ATCC 49242]
 gi|322396587|gb|EFX99115.1| multi-sensor signal transduction histidine kinase [Methylocystis
           sp. ATCC 49242]
          Length = 842

 Score =  320 bits (820), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 133/684 (19%), Positives = 260/684 (38%), Gaps = 33/684 (4%)

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
              +G    +P+   A   +       G  G  ++ +  V  D   L    ++  +  +E
Sbjct: 167 LRRKGEGFRMPLAGLAGRHFDAEGRAVG--GSAVLRIREVSGDRLELIGLRERHAAAQNE 224

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
           +  G  ++ +        +     L   N   +     A   D +      L     ++ 
Sbjct: 225 L-AGLRTLLEATPAPVWIRDAEGRLSFVNSAYAAAVEAAEPRDAVARGLELLEQPARAAA 283

Query: 270 PEQEDFHTINLNQYTKKQY-------FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
            +  +   +   +                       +   +      ++ A   +     
Sbjct: 284 AQSLEKGAVWRARVPAVVAGERHLLDVTQTATPEMAASIAIDRHEVETVRADLQQQMQSH 343

Query: 323 PETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
             T+D+ P    ++  G  L Y N ++  L +      +E       +LD  +      +
Sbjct: 344 VRTLDQLPTAVAIFDRGRRLIYHNDAYAKLWQI-DAPFLEQKPTDGEILDRLRAEQRVPV 402

Query: 382 KPVMLYRSDRTCIAASA---RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
           +       +R   A  +     HT        + +   P          +  +  +  D+
Sbjct: 403 ESDYKAWKERLFEAYRSPEPIRHTWHLPDGRIIDVVAHP--NTQGGVTYLYDDTTKAYDL 460

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
           +TR N              LE   +G+A+   +G +   N A ++L+   VE + +KP  
Sbjct: 461 ETRFNALNRTQSE-----TLETLREGVAVFGADGRLNFCNPAFAQLWRLDVEQLDKKPRF 515

Query: 499 VFLEQNTPSVMNHYLT----EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554
             +      + ++  T    +     L +  E  T    + + ++ L    + L   +  
Sbjct: 516 DAIVAQCRKLHDNAETWAELQCFVTGLAEMREGFTRRIERSDGVV-LDCTAQSLLDGA-A 573

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
            LT  D++     +  L+   K        ++DF+  VS+E+R+PL  I GF  ++  + 
Sbjct: 574 LLTFVDVTADVNVERALTDRNKALLAAEKLRNDFIHHVSYELRSPLNNINGFVHLLGEES 633

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
            GPL NPR +EY  Y+ +S   +L I++D+LD++ I+   + L F  V  +  +  AI  
Sbjct: 634 TGPL-NPRQLEYLGYVSKSSAALLAIIDDILDLATIDQDALELEFSDVDAEATMRAAIEG 692

Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
           VQ    E  I ++    +++     D + V+QI  N+LSNAI F+  G  + +       
Sbjct: 693 VQDRLAENSIDVQIVAMDDVGTFRGDAKRVRQILFNLLSNAIGFSRPGQTVTL-AAMRRG 751

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
           +EV+ +V D G G+    LE+    F    ++   R  G GLGL + +A ++ + GK +I
Sbjct: 752 DEVVFKVTDRGRGIPPEVLERVFDRFE--SHTAGSRHRGVGLGLSIVRAFMELHGGKVFI 809

Query: 795 FSTPAKGTLIEIIFPLYDTSHPHD 818
            S P +GT +  +FP    ++  D
Sbjct: 810 DSAPGEGTTVTCVFP-AQAANEQD 832



 Score = 70.4 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 40/409 (9%), Positives = 99/409 (24%), Gaps = 32/409 (7%)

Query: 190 DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH 249
                   K      + +     G  S                  R+    + L    A 
Sbjct: 99  TRARLDRAKTFLASEAQILIAWAGPDSEPDINASSMLLAESVSPRRILGFGAWLAPKDAQ 158

Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
             +                L      H     +         ++  S +  E +  R   
Sbjct: 159 DLEAAVESLRRKGEGFRMPLAGLAGRHFDAEGRAVGGSAVLRIREVSGDRLELIGLRER- 217

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
              A            ++  P P ++    G L + N                     + 
Sbjct: 218 --HAAAQNELAGLRTLLEATPAPVWIRDAEGRLSFVN------------------SAYAA 257

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
            ++A +  D  A    +L +  R   A S     +   R  ++           Q     
Sbjct: 258 AVEAAEPRDAVARGLELLEQPARAAAAQSLEKGAVWRARVPAVVAGERHLLDVTQTATPE 317

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
               I  +  +    +  ++ ++      L+     +AI +R   ++  N A +KL+   
Sbjct: 318 MAASIAIDRHEVETVRADLQQQMQSHVRTLDQLPTAVAIFDRGRRLIYHNDAYAKLWQID 377

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE-------KITLGSTKEEKLLSL 541
              + +KP    +     +     +         +  E               + +++ +
Sbjct: 378 APFLEQKPTDGEILDRLRAEQRVPVESDYKAWKERLFEAYRSPEPIRHTWHLPDGRIIDV 437

Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
                        +    D ++    + + +   +   +      + +A
Sbjct: 438 VAHP---NTQGGVTYLYDDTTKAYDLETRFNALNRTQSETLETLREGVA 483



 Score = 60.0 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/375 (10%), Positives = 99/375 (26%), Gaps = 14/375 (3%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            W  DA G L  ++      +     +    R  ++ +             L++   W  
Sbjct: 239 VWIRDAEGRLSFVNSAYAAAVEAAEPRDAVARGLELLEQP---ARAAAAQSLEKGAVWRA 295

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +     + G    + +   A P  + +          +    +                 
Sbjct: 296 RVPAV-VAGERHLLDVTQTATPEMAASIAIDRHEVETVRADLQQQMQSHVRTLDQLPTAV 354

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT---EYYAHKDDVLKTEKYPLL 262
            + +  +           ++   +P    +  +         E     +   K  K  L 
Sbjct: 355 AIFDRGRRLIYHNDAYAKLWQIDAPFLEQKPTDGEILDRLRAEQRVPVESDYKAWKERLF 414

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
            +  S  P +  +H  +                   ++ Y        L   F+      
Sbjct: 415 EAYRSPEPIRHTWHLPDGRII---DVVAHPNTQGGVTYLYDDTTKAYDLETRFNALNRTQ 471

Query: 323 PETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
            ET++       V+ + G L + NP+F  L +   V+ ++       ++   +   +NA 
Sbjct: 472 SETLETLREGVAVFGADGRLNFCNPAFAQLWRL-DVEQLDKKPRFDAIVAQCRKLHDNAE 530

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
               L               T +  R + + +        +        +     +V+  
Sbjct: 531 TWAELQCFVTGLAEMR-EGFTRRIERSDGVVLDCTAQSLLDGAALLTFVDVTADVNVERA 589

Query: 442 IN-KRKMEIEVMQLC 455
           +  + K  +   +L 
Sbjct: 590 LTDRNKALLAAEKLR 604


>gi|332527792|ref|ZP_08403830.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax benzoatilyticus
           JA2]
 gi|332112187|gb|EGJ12163.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax benzoatilyticus
           JA2]
          Length = 1151

 Score =  320 bits (820), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 108/635 (17%), Positives = 206/635 (32%), Gaps = 51/635 (8%)

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
           I     +      D+F   +        ++                 E+  L       +
Sbjct: 230 IAPELIAATGLATDLFELAAEDVTEAGADRFYDSGLQAGDATVRTVVEREVLGRRWRLQM 289

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
                F    +    +         ++  +F         +         +     V++ 
Sbjct: 290 SATPAFMARPVGTEPRTLLLAGAAASALAAFAAALLAGAAAQRRQTAIERSRRAAIVERS 349

Query: 330 PIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388
                 +   G +   N     L  Y + + +         L  P   +    + +    
Sbjct: 350 ADAIVGLSLDGVVTDWNRGAENLFGYPAAEALGRPLAA---LIRPPGHEAEDAELLRRAA 406

Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
           +         +           L ++      A++    +    I  +        R  E
Sbjct: 407 AGEAVEPLDTQRRRRD---GRLLDVSIALGPIADETGRVVGVAAIVRDSGQRAARLRSAE 463

Query: 449 IEVM---------------------QLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
            +                        L + +       ++ + EG+IL  N    ++ G 
Sbjct: 464 QQRAVATERAEIAEATLGAAQRDYLTLSTAI-TAQSLYSVTDPEGMILDANEHFCRVSGR 522

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
             +++      V             L   ++    +T +       K+     +  +I  
Sbjct: 523 TRDELRGHTHRVVSSGTHAREFWSALWATITAG--RTWQGEICNRAKDGSRFWVDCVIVP 580

Query: 548 LPFSSC----YSLTMHDISEWKQEK-------NKLSHAKKIAEKESSHKSDFLARVSHEI 596
           +         Y     DI+  KQ +        +L+     AE  +  KS FLA +SHEI
Sbjct: 581 VTGLDGRIVRYLSVGTDITALKQAEQKLELLNEELARRVDQAEAATRAKSAFLANMSHEI 640

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTP+ AIIG + ++         +    E  + +D +   +L ++ND+LD+SKIE+G++ 
Sbjct: 641 RTPMNAIIGLTHLMARDA----ADTTLRERLHKVDDAARHLLQVINDILDLSKIEAGRLA 696

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716
           L     S DE +   + +V   A  K + +         R+  D + + Q  +N+L NA+
Sbjct: 697 LESVEFSRDELMHRVLGMVTDAAARKGLELVLDTGRLPERLRGDAQHLAQALINLLVNAV 756

Query: 717 HFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
            FT  G  + +     + E+    V   VRDTG+G+T     +  + F Q   S   R  
Sbjct: 757 KFTDHG-WVRLRGERVAAEDSRVLVRFEVRDTGIGITAERQARLFEAFEQADTSTTRRYG 815

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           GTGLGL L + +     G   + S P +G+     
Sbjct: 816 GTGLGLALTRHLARLMGGDAGVDSVPGQGSSFWFS 850



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 45/424 (10%), Positives = 103/424 (24%), Gaps = 42/424 (9%)

Query: 163 LAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKY 222
           +A     S +REF G RG G +   RV     A      ++        +  +  + E +
Sbjct: 90  MAYSGTRSLDREFPGARGIGYIQ--RVAPGDEAAFTADIRRRGWTDFEIRHLAPHDGEHW 147

Query: 223 DIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQ 282
            I        ++       +          +        +T+  + +          L  
Sbjct: 148 VIVDVAPGARNVGASGLDIASEPRRRAAAALAMRSGTSAITAPITLVQATSAPSQGFLML 207

Query: 283 YTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLF 342
              +                      P ++        L  +  +               
Sbjct: 208 LPVRLAGTPAGGEV------WGWTYAPIIAPELIAATGLATDLFELAAEDV--------- 252

Query: 343 YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT 402
                                 G     D+   + +  ++ V+                 
Sbjct: 253 -------------------TEAGADRFYDSGLQAGDATVRTVVEREVLGRRWRLQMSATP 293

Query: 403 IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
               R        +    A           +       R       IE  +  +I+E ++
Sbjct: 294 AFMARPVGTEPRTLLLAGAAASALAAFAAALLAGAAAQRRQTA---IERSRRAAIVERSA 350

Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN-HYLTEILSLDL 521
           D I  ++ +G++   NR    LFGYP  + L +P    +        +   L    + + 
Sbjct: 351 DAIVGLSLDGVVTDWNRGAENLFGYPAAEALGRPLAALIRPPGHEAEDAELLRRAAAGEA 410

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAE 579
            + L+            +S+ +             +  + D  +           + +A 
Sbjct: 411 VEPLDTQRRRRDGRLLDVSIALGPIADETGRVVGVAAIVRDSGQRAARLRSAEQQRAVAT 470

Query: 580 KESS 583
           + + 
Sbjct: 471 ERAE 474



 Score = 62.7 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 49/454 (10%), Positives = 110/454 (24%), Gaps = 46/454 (10%)

Query: 48  SFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWN-IDAHGYLKEISEELPKTI 106
           S EQ       +  ++      ++  ++      T +  ++  D  G + + +E   +  
Sbjct: 461 SAEQQRAVATERAEIAEATLGAAQRDYLTLSTAITAQSLYSVTDPEGMILDANEHFCRVS 520

Query: 107 GNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAA 165
           G    ++ G     VS   H     + +   +    TW G+      +G+     +D   
Sbjct: 521 GRTRDELRGHTHRVVSSGTHAREFWSALWATITAGRTWQGEICNRAKDGS--RFWVDCVI 578

Query: 166 LPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF 225
           +P+   +     +   G                 L+     L        +  + K    
Sbjct: 579 VPVTGLDGRIVRYLSVGT--DITALKQAEQK---LELLNEELARRVDQAEAATRAKSAFL 633

Query: 226 SQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES----------SLPEQEDF 275
           +  S      M   +           D    E+   +                L + E  
Sbjct: 634 ANMSHEIRTPMNAIIGLTHLMARDAADTTLRERLHKVDDAARHLLQVINDILDLSKIEAG 693

Query: 276 HTINL-----NQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330
                           +  G + + +      L             + ++L    ++   
Sbjct: 694 RLALESVEFSRDELMHRVLGMVTDAAARKGLELVLDTGRLPERLRGDAQHLAQALINLLV 753

Query: 331 IPFFVYSHG--NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388
                  HG   L     +          +  +   G++    A               R
Sbjct: 754 NAVKFTDHGWVRLRGERVAAEDSRVLVRFEVRDTGIGITAERQARLFEAFEQADTSTTRR 813

Query: 389 SDRTCIAASARLHTIQWNRENS---------------LAMTFIPFEKANQFPENMPQNGI 433
              T +  +   H  +    ++                 +         +        G+
Sbjct: 814 YGGTGLGLALTRHLARLMGGDAGVDSVPGQGSSFWFSCWLGLGDTPATERPAVVQTPFGL 873

Query: 434 EPEDVDTRINKRKMEIEVMQLCSI---LEATSDG 464
               VD     R++  E   L  I   ++  SDG
Sbjct: 874 RALLVDDLPESREVLAE--MLRRIGLEVDEASDG 905



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/401 (9%), Positives = 98/401 (24%), Gaps = 36/401 (8%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151
            G + + +       G  A + +G  L  +      +  +                    
Sbjct: 359 DGVVTDWNRGAENLFGYPAAEALGRPLAALIRPPGHEAEDAELLRRAAAGEAVEPLDTQR 418

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
                  + + +A  PI        G     IV  +          ++     +   EI 
Sbjct: 419 RRRDGRLLDVSIALGPIADETGRVVGVA--AIVRDSGQRAARLRSAEQQRAVATERAEIA 476

Query: 212 KGHSSVEKEKYDIFSQQSPPPHL----------------------RMKNKVSSLTEYYAH 249
           +      +  Y   S       L                      R ++++   T     
Sbjct: 477 EATLGAAQRDYLTLSTAITAQSLYSVTDPEGMILDANEHFCRVSGRTRDELRGHTHRVVS 536

Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDF--HTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
                +     L  +  +    Q +      + +++        +         YLS   
Sbjct: 537 SGTHAREFWSALWATITAGRTWQGEICNRAKDGSRFWVDCVIVPVTGLDGRIVRYLSVGT 596

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
             +     ++   L  E + +      V        A  +FL    ++    +    GL+
Sbjct: 597 DITALKQAEQKLELLNEELAR-----RVDQAEAATRAKSAFLANMSHEIRTPMNAIIGLT 651

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
            L+           +   +  + R  +     +  +       LA+      + ++    
Sbjct: 652 HLMARDAADTTLRERLHKVDDAARHLLQVINDILDLSKIEAGRLAL---ESVEFSRDELM 708

Query: 428 MPQNGIEPEDVDTRINKRKMEIEV--MQLCSILEATSDGIA 466
               G+  +    +  +  ++      +L    +  +  + 
Sbjct: 709 HRVLGMVTDAAARKGLELVLDTGRLPERLRGDAQHLAQALI 749


>gi|39729|emb|CAA37124.1| bvgS product, put. sensor protein [Bordetella parapertussis]
          Length = 1238

 Score =  320 bits (820), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 108/556 (19%), Positives = 200/556 (35%), Gaps = 31/556 (5%)

Query: 274 DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV-DKCPIP 332
                            T+      +   L  + +P       +        V D     
Sbjct: 399 TRQDPAAPADADHLDGRTIAMVRNSAAIPLLQQRYPQAKVVTADNPTEAMLLVADGQADA 458

Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
                    +Y N  F    +  S  D+  A            +        +L ++  +
Sbjct: 459 VVQTQISASYYVNRYFAGKLRIASALDLPPAEIALA------TARGQTELISILNKALYS 512

Query: 393 CIAASARLHTIQW---NRENSLAMTFIPFEKANQFPENMPQNG-------IEPEDVDTRI 442
                      +W   + +      +            +           +  +    + 
Sbjct: 513 ISNDELASIVSRWRGSDGDPRTWYAYRNEIYLLIGLGLLSALLFLSWIVYLRRQIRQRKR 572

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            +R +  ++  +  +++ T + I + ++EG +L  N A    FG   + +L K       
Sbjct: 573 AERALNDQLEFMRVLIDGTPNPIYVRDKEGRMLLCNDAYLDTFGVTADAVLGKTIPEANV 632

Query: 503 QNTPSVMNH----YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLT 557
              P++        LT + +    +  ++      +   +    +               
Sbjct: 633 VGDPALAREMHEFLLTRMAAEREPRFEDRDVTLHGRTRHVYQWTVPYGDSLGELKGIIGG 692

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
             DI+E  +   +L  AK+ A+  +  K+ FLA +SHEIRTP+ AIIG  E+       P
Sbjct: 693 WIDITERAELLRELHDAKESADAANRAKTTFLATMSHEIRTPMNAIIGMLELAL---LRP 749

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
                  +       S   +L+++ D+LDI+KIE+GK +L     +L      AI L   
Sbjct: 750 ADQEPDRQSIQVAYDSARSLLELIGDILDIAKIEAGKFDLAPVRTALRALPEGAIRLFDG 809

Query: 678 YANEKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
            A +K I +        +  +L D   +KQ+  N++ NAI FT  G Q++++ T   + E
Sbjct: 810 LARQKGIELVLKTDIVGVDDVLIDPLRMKQVLSNLVGNAIKFTTEG-QVVLTVTARPDGE 868

Query: 737 ---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQ-QIRGEGTGLGLPLAKAMVDANMGKF 792
              V   V DTG G++  +  +  KPF Q+  S       GTGLGL +++ +V+   G  
Sbjct: 869 AAHVQFSVSDTGCGISEADQRQLFKPFSQVGGSAEAGPAPGTGLGLSISRRLVELMGGTL 928

Query: 793 YIFSTPAKGTLIEIIF 808
            + S P  GT + +  
Sbjct: 929 VMRSAPGVGTTVSVDL 944



 Score = 51.2 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/232 (10%), Positives = 56/232 (24%), Gaps = 12/232 (5%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D  G +   ++    T G  A  ++G  + + + +        + + L  +     +   
Sbjct: 599 DKEGRMLLCNDAYLDTFGVTADAVLGKTIPEANVVGDPALAREMHEFLLTRMAAEREPRF 658

Query: 150 WPIEGTNLYVP--IDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
              + T       +    +P      E  G  G  I        +         +     
Sbjct: 659 EDRDVTLHGRTRHVYQWTVPYGDSLGELKGIIGGWI--DITERAELLRELHDAKESADAA 716

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
           +  K    +    +                 +++ L       D       Y    S   
Sbjct: 717 NRAKTTFLATMSHEIRTPMNAIIGML-----ELALLRPADQEPDRQSIQVAYDSARSLLE 771

Query: 268 SLPEQEDFHTINLN---QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
            + +  D   I          +     L   +   F+ L+ +    L    D
Sbjct: 772 LIGDILDIAKIEAGKFDLAPVRTALRALPEGAIRLFDGLARQKGIELVLKTD 823


>gi|330895938|gb|EGH28222.1| PAS protein [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 993

 Score =  320 bits (820), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 132/754 (17%), Positives = 265/754 (35%), Gaps = 54/754 (7%)

Query: 75  VFDPIPRTVRFTW--NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH 132
            F+     V F++    D    L  I+  L     + + +++G         L  D    
Sbjct: 239 KFESRLPPVGFSFAVRGDEQRLLTFINRALDSIAPSTSREVLGR-WTM---GLGADVEGQ 294

Query: 133 IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIY---SRNREFSGFRGFGIVHVNRV 189
              L   +  W     L     T   V       P Y    +N  + G     +  ++R+
Sbjct: 295 RIRLTSAERRW----LLKHPSVTIATVQH-----PPYIYKDKNGHWVGLNADVLSRISRM 345

Query: 190 DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH 249
               + + + L      +  ++ G + +     +   ++     L         +  +  
Sbjct: 346 -TGLQFVHQELPSTQLSIDMLRAGQADMNTTLAENTERRR---FLDFTYSFGGNSWMFVV 401

Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
           + D         LT +  +LP +                   L++  +     +  R   
Sbjct: 402 RSDRSSYISLDSLTGKVLALPARH-----------------ALEDLIRREHPLIQLRLVD 444

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
           +        E+   +   +  +  +++  G L  A  S            I+    L  +
Sbjct: 445 TYDQARALVESGAADATIQNEVGAYLFPSGQLKVA-RSVEGQWSPDRFSVIKTQPELLGI 503

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
           L+        A    +  +   + +          W          +             
Sbjct: 504 LNKALEEFPVAELRSIRLKWLGSALP-----QPSLWGGIPPWVFWVVSLALLIGLVSLTW 558

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
            + ++ +    +  +R++  ++    ++L+   + I + + +G ++S NR+  +  G   
Sbjct: 559 SSRLKVQIRQRQRVQRQLNDQLAFKHALLDGIPNPIYVRDLKGRLISCNRSYEQSLGISF 618

Query: 490 EDILRKPFT--VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
           E +  +  T    + +     M+     +L        ++      K   +    +    
Sbjct: 619 EQMNGRRLTDVNLIPRALAEQMHTDYLTLLENHQPVFSDRTIELPGKRMDVWQWTVPFFA 678

Query: 548 LPFS-SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
                        DI+E KQ + +L  A ++A++ +  KS FLA +SHEIRTP+ AIIG 
Sbjct: 679 ADGQLQGLLGGWIDITERKQLEQQLQEAMRLADQANEAKSAFLASMSHEIRTPMGAIIGL 738

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
            E+   Q       P          RS   ++ ++ + LD+++IE+G M L     SL  
Sbjct: 739 LELECEQALRLGKIPSQG--LQVAHRSATELVALIGESLDLARIEAGGMQLSLAVTSLQG 796

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQI 725
                I L    A EK + +R  F+         D   ++Q+  N+L NA+ FT  G  +
Sbjct: 797 LFDGVIELFSAQAGEKGVELRLEFSGQARGDYWLDPFRLRQVLHNVLGNALKFTRQGAVV 856

Query: 726 I---ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
           +   ++     +  V + ++D+G G+     ++  +PF Q  +       G+GLGL + +
Sbjct: 857 VTLDVTHDSPESTRVRIGIQDSGEGIDPQRQQQVFQPFTQASDDTAAHYGGSGLGLSITR 916

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
            +V+   G   + S P KGTL+ I  PL   S P
Sbjct: 917 QLVELMKGDISLHSEPGKGTLVTIDLPLTRVSEP 950


>gi|94968803|ref|YP_590851.1| signal transduction histidine kinase, nitrogen specific, NtrB
            [Candidatus Koribacter versatilis Ellin345]
 gi|94550853|gb|ABF40777.1| signal transduction histidine kinase, nitrogen specific, NtrB
            [Candidatus Koribacter versatilis Ellin345]
          Length = 1255

 Score =  320 bits (820), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 117/682 (17%), Positives = 242/682 (35%), Gaps = 49/682 (7%)

Query: 160  PIDLAALPIYSRNREFSGF-----RGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214
              D+A  P+ S   +  G      RG G+  V             +  + S L       
Sbjct: 600  WTDVAIAPLASGTGDLIGMLCLANRGRGLDDVEAHLLHAVVAHASVAFQNSRLFGQIANS 659

Query: 215  SSVEKEKYDIFSQQ--SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ 272
            S    + +D           H R+     +++E    +   L       L    S+    
Sbjct: 660  SKSWSQIFDAIGDLMIVHDDHNRIVRMNRAVSELVGVQASQLTGMDVRALVPLCSTDDSP 719

Query: 273  EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD-----EGENLTPETVD 327
              F  +     ++ +     ++    +           +    D     E E    E  D
Sbjct: 720  CPFCALEREGLSEYENQALQRSYLVSTSMISGSTEGQVVHILKDISDRQEAERRYRELFD 779

Query: 328  KCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
                  FF    G     N + + +  Y S +D+        L   P     +  +   L
Sbjct: 780  NIHEGLFFSTPEGRFVEVNDALVKMLGYDSREDLLQVDITHQLHITP----AHRERFSTL 835

Query: 387  YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
                    +  + L  ++ + +    +    +   +         G+  +  + +  +  
Sbjct: 836  LEEHGAMKSFESPL--VRKDGKIIHTLQ-NCYAVRDASGRVFQYRGLILDITELKSVQTD 892

Query: 447  MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
             + +      IL  T   I + +  G+I   N   S   GY  E ++ KP ++ +   + 
Sbjct: 893  AQRQRDFNLKILNNTQSVIIVADTAGLITYANDRSSDACGYDPEGLVGKPLSLLVSAESQ 952

Query: 507  SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDIS 562
             +    +    + +  ++L+        +++++   + +  +   S         M DI+
Sbjct: 953  ELFARAIEATSNGEQVESLD--LPLQCADDRVVRYNVTLSPMRDESGNVTSIIALMTDIT 1010

Query: 563  EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
            +    + KL H++K+A          ++ V+HE+  PLTAI+G+++++ +    P   P 
Sbjct: 1011 DASMLQAKLIHSEKMA-----AVGQLVSGVAHEVNNPLTAIMGYADLLTSSPDIP---PD 1062

Query: 623  YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                   I +       IV +LL  ++    +   H EPV L+  ++  + L Q      
Sbjct: 1063 ARRDLGIILQEAQRTKQIVQNLLSFAR----QSVPHREPVDLNAVLARTLQLRQYDFVNH 1118

Query: 683  RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ---IIISTTHTSNEEVIL 739
             + +      N+P +L D + ++Q+ LN+++NA        +   + IST    N  V +
Sbjct: 1119 GVRVEEDLDPNLPPVLGDPQQLQQVFLNVVNNAYDAVREVARPPAVRISTGAV-NGVVEV 1177

Query: 740  RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP- 798
            ++ D G G++  +  +   PF          G+GTGLGL +   +V  + G+    + P 
Sbjct: 1178 QISDNGPGISMPD--RIFDPFFTTKG----VGKGTGLGLSICYGIVREHGGEITCVNHPE 1231

Query: 799  AKGTLIEIIFPLYDTSHPHDCI 820
             +G    I  P+Y  +   D +
Sbjct: 1232 GQGATFFIRLPIYLLTPEKDEV 1253



 Score = 60.0 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/274 (9%), Positives = 71/274 (25%), Gaps = 18/274 (6%)

Query: 91   AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKR-QNTWYGKT 147
              G   E+++ L K +G  + + +     D++  LHI P        LL+        ++
Sbjct: 790  PEGRFVEVNDALVKMLGYDSREDLLQ--VDITHQLHITPAHRERFSTLLEEHGAMKSFES 847

Query: 148  TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
             L   +G  ++         +   +     +RG  ++         +   +R       +
Sbjct: 848  PLVRKDGKIIHTL--QNCYAVRDASGRVFQYRG--LILDITELKSVQTDAQRQRDFNLKI 903

Query: 208  HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS----SLTEYYAHKDDVLKTEKYPLLT 263
                +    V      I             +        L+   + +   L        +
Sbjct: 904  LNNTQSVIIVADTAGLITYANDRSSDACGYDPEGLVGKPLSLLVSAESQELFARAIEATS 963

Query: 264  SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
            + E            +            +++ S      ++     + ++        + 
Sbjct: 964  NGEQVESLDLPLQCADDRVVRYNVTLSPMRDESGNVTSIIALMTDITDASMLQAKLIHSE 1023

Query: 324  ETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSV 357
            +      +   V   G     N     +  Y  +
Sbjct: 1024 KM---AAVGQLV--SGVAHEVNNPLTAIMGYADL 1052



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/373 (10%), Positives = 105/373 (28%), Gaps = 27/373 (7%)

Query: 90   DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
            D H  +  ++  + + +G  A ++ GM +  +  +   D +      L+R+        L
Sbjct: 678  DDHNRIVRMNRAVSELVGVQASQLTGMDVRALVPLCSTDDSPCPFCALEREG-------L 730

Query: 150  WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
               E   L     ++           SG     +VH+ +  +D +   +R  + F ++HE
Sbjct: 731  SEYENQALQRSYLVSTS-------MISGSTEGQVVHILKDISDRQEAERRYRELFDNIHE 783

Query: 210  IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
                 +   +      +      +   ++ +     +  H     +     LL    +  
Sbjct: 784  GLFFSTPEGRFVEVNDALVKMLGYDSREDLLQVDITHQLHITPAHRERFSTLLEEHGAMK 843

Query: 270  PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE----T 325
              +      +       Q    +++ S   F+Y       +             +     
Sbjct: 844  SFESPLVRKDGKIIHTLQNCYAVRDASGRVFQYRGLILDITELKSVQTDAQRQRDFNLKI 903

Query: 326  VDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
            ++       V    G + YAN        Y     +     L        +S  +     
Sbjct: 904  LNNTQSVIIVADTAGLITYANDRSSDACGYDPEGLVGKPLSL-------LVSAESQELFA 956

Query: 385  MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
                +        +    +Q   +  +          ++         +  +  D  + +
Sbjct: 957  RAIEATSNGEQVESLDLPLQCADDRVVRYNVTLSPMRDESGNVTSIIALMTDITDASMLQ 1016

Query: 445  RKMEIEVMQLCSI 457
             K+ I   ++ ++
Sbjct: 1017 AKL-IHSEKMAAV 1028



 Score = 43.9 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 22/232 (9%), Positives = 54/232 (23%), Gaps = 6/232 (2%)

Query: 90   DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
            D  G +   ++      G     ++G  L  +      +      +              
Sbjct: 915  DTAGLITYANDRSSDACGYDPEGLVGKPLSLLVSAESQELFARAIEATSNGEQVESLDLP 974

Query: 150  W-PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                +   +   + L+  P+   +   +      ++      +  +A     +K  +   
Sbjct: 975  LQCADDRVVRYNVTLS--PMRDESGNVT--SIIALMTDITDASMLQAKLIHSEKMAAVGQ 1030

Query: 209  EIKK-GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
             +    H         +           +             +    K     LL+    
Sbjct: 1031 LVSGVAHEVNNPLTAIMGYADLLTSSPDIPPDARRDLGIILQEAQRTKQIVQNLLSFARQ 1090

Query: 268  SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
            S+P +E      +   T +       N+     E L     P L       +
Sbjct: 1091 SVPHREPVDLNAVLARTLQLRQYDFVNHGVRVEEDLDPNLPPVLGDPQQLQQ 1142


>gi|301161869|emb|CBW21413.1| putative two-component system sensor histidine kinase [Bacteroides
           fragilis 638R]
          Length = 929

 Score =  320 bits (820), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 105/644 (16%), Positives = 233/644 (36%), Gaps = 35/644 (5%)

Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS 242
           I    R   D     +   +       +     ++ ++   +           + +++  
Sbjct: 293 ICIELRKAKDEAVRERSFLRNLFRFMPMGYIRMTMVRDAAGLPCDYRIADANDLSSELIG 352

Query: 243 LTEYYA------HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS 296
           ++                K +   LL   E S+ ++ D +     + +    +   ++  
Sbjct: 353 MSLSDYVGCLASELHADFKAKVDYLLDVMEGSVHKETDVYFHRTQRSSHCIVYSPEKDEV 412

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYK 355
              F  L            D  E L        P    +Y   GNL   N   +     K
Sbjct: 413 VALF--LDSTETIRAHRALDRSEKLFKNIFANIPAGVEIYDKDGNLLDLNNWDMETFGVK 470

Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
              D+             ++ +    + ++ +R +    + +        ++ N + +  
Sbjct: 471 DKADVMGVNFFENPNVPLEIRERVRNEDLVDFRLN---YSFNKASDYYHSDKSNIIELYT 527

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA---IINREG 472
              +  +          I  ++ +      ++         I +    G A   ++++ G
Sbjct: 528 KVSKLFDSQGNFNGYVLINIDNTERIDAINRIRDFENFFLLISDYAKVGYAKLNLLSKRG 587

Query: 473 I-ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
             I    + + +    P+  ++       +       +  +  ++L+ + +    ++ + 
Sbjct: 588 YAIKQWFKNMGETEDIPLSSVVG--VYDKMHPEDRQKVFDFYEKVLAGEEKDFRSEMRIL 645

Query: 532 STK---EEKLLSLRIIIKKLPFSSC---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
                 E   + + +++ K              +DI+E K+ +  L  AK+ AE     K
Sbjct: 646 KPGATNEWNWVRMNVVVTKFEPEHGEVEIIGINYDITELKETEAMLIEAKEKAETMDRLK 705

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
           S FLA +SHEIRTPL AI+GFS ++ +            EY   +  + +L+L +++D+L
Sbjct: 706 SAFLANMSHEIRTPLNAIVGFSGLLVDTE----DMEERCEYIKIVQENNDLLLQLISDIL 761

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
           D+SKIE+G     +    ++    + +   Q+   +  + +      +   +++D   + 
Sbjct: 762 DLSKIEAGTFEFTYGETDVNILCEDIVRSSQIKVPQ-GVELVFDPHPSDCTVISDRNRLH 820

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           Q+  N ++NA+ FT SG  I +         V   V DTG+G++  +L    + F ++ +
Sbjct: 821 QVISNFVNNALKFTSSGS-IHVGYEKKEEG-VEFYVSDTGIGISKEQLTHIFERFVKLNS 878

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
                  GTGLGL + K++V+   G   + S   KG+      P
Sbjct: 879 FIH----GTGLGLSICKSIVEQLGGVIGVDSEEGKGSRFWFTIP 918


>gi|121535086|ref|ZP_01666903.1| multi-sensor signal transduction histidine kinase [Thermosinus
           carboxydivorans Nor1]
 gi|121306336|gb|EAX47261.1| multi-sensor signal transduction histidine kinase [Thermosinus
           carboxydivorans Nor1]
          Length = 593

 Score =  320 bits (820), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 72/398 (18%), Positives = 172/398 (43%), Gaps = 26/398 (6%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
            +  ++              +D ++  +++  +  +L  IL+   + + +++R G +   
Sbjct: 219 IKTGDEIEILGHTLNNLAARLDDKL--KEIVAQKHKLELILQHMDNAVLLLDRYGRVTDA 276

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
           N   + LFG     + +    V       S+++  + E ++    + +  +       ++
Sbjct: 277 NLRAASLFGITGAMLGQHNIQVI----GNSLLDKAVRETVATGENRLI-MLRTNLHGAKR 331

Query: 538 LLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
           +  + +               HDI+  ++ + +              +++F+A  SHE++
Sbjct: 332 VFQVFLAPLGNDGGDGVLTVFHDITVLQEIQER--------------QAEFVANASHELK 377

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK--M 655
           TPLTAI GF+  + +            ++   I      +  +V+DLL ++ +++ +   
Sbjct: 378 TPLTAIKGFAATLLDGAIREPALAT--KFVTIIHDEAERMNRLVDDLLQLASLDARETGQ 435

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715
               EP  + +  +  +  +      KR+ +          ++A+   ++Q+ +N+L N+
Sbjct: 436 QARLEPTDIYKVAAAVVEELSAQWRAKRLSVLLDAPARPLAVMANPDWLRQVLVNLLDNS 495

Query: 716 IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           I +TP GG+I++     ++++ ++ V+D+G+G+   +L      F ++  ++  R  GTG
Sbjct: 496 IKYTPEGGKILVKW-WQASDKAVVMVQDSGIGIPAKDLPFIFDRFYRVDRARSRRAGGTG 554

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
           LGL + K +++   GK  + S P  GT      PL  T
Sbjct: 555 LGLAIVKHIIETLGGKIDVVSEPDAGTTFTFTLPLAKT 592


>gi|47564259|ref|ZP_00235304.1| sporulation kinase [Bacillus cereus G9241]
 gi|47558411|gb|EAL16734.1| sporulation kinase [Bacillus cereus G9241]
          Length = 801

 Score =  320 bits (820), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 101/532 (18%), Positives = 211/532 (39%), Gaps = 47/532 (8%)

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVD-----KCPIPFFVYSHGNLFYANPSFLLL 351
            +  E +      +     +   + T E ++                G++  AN ++  +
Sbjct: 294 GQVIEVVGSAVDITERKKVESELSATKELLESFIKHNLDAITISDREGHILQANKAYEKI 353

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ-WNRENS 410
             + S + I            P + D    + +   +   T  +   RL T++  +  + 
Sbjct: 354 FGWSSQEIIGKRL--------PCVPDFLMEESLENIQKILTGESVVTRLETVRQRSDGSL 405

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK-------MEIEVMQLCSILEATSD 463
           L ++       +     +  + I  +  + +  +R+       +    M+  +++E  +D
Sbjct: 406 LDISLTVSPILDVRGNVIALSAICRDISERKQAERERHRLHQQLRDSEMKYRALIEQATD 465

Query: 464 GIAI--INREG---IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
            + +  +N +      +  N    + FGY  E++L   F+  + Q++  ++   L +I  
Sbjct: 466 AVYVVELNEDNVPSRFIEVNPVGCRRFGYSREELLSLSFSNIVPQDSQMIVK-LLEKIKK 524

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578
                TL+   +  T +       + +  L     +     DI+E  + +  L  ++K+A
Sbjct: 525 GQTSFTLQDEYVFPTGKVITTEFSVRVFNLNGKKVFLSISRDITERLKTEELLRKSEKLA 584

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
                        ++HEI  PLTA+ GF +++K+       N     Y N +      + 
Sbjct: 585 VV-----GQLATVMAHEINNPLTAMKGFMQLLKSTE-----NENNQGYINIVSSEIERIE 634

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
            I  + + ++K +  KM  +    ++   + + + L+Q  A    I  R      IP I 
Sbjct: 635 SITTEFMAVAKPQVVKMQPN----NISVLMDQVLMLLQPQAMMHNIKFRIDLNPGIPLIS 690

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
            +   +KQ+ +NIL NAI   P GG+I+I      N ++ +R  D G G+    +    +
Sbjct: 691 CEGNQLKQVFVNILKNAIESMPMGGEILIQLNILDNNQLSIRFIDQGCGIPKERIPYLGE 750

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           PF        I+ EG GLGL +   +++ + GK +I S    GT++E+  P+
Sbjct: 751 PFY------SIKEEGIGLGLMICYKIIETHQGKIFIESEMNTGTIVEVTLPI 796



 Score =  107 bits (268), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 44/286 (15%), Positives = 91/286 (31%), Gaps = 21/286 (7%)

Query: 313 AYFDEGENLTPETVDKCPIPFF----VYSHGNLFYANPSFLLLTKYKSVDDIEI-AGGLS 367
               + +    +TV +     F    V  H      +  F     + S   +      + 
Sbjct: 186 RELKKSKQELTDTVHELQGGIFKFKKVGKHFIHTLCDGQFYYQNGFYSEQVVGKSLRTID 245

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
             +  P L          L   +   I        + W  + ++ +         +  + 
Sbjct: 246 ASIIPPHLVPQLMKY--YLQAWEGKEIIFE-----LPWPNDKTIILI--ALRPIKRNGQV 296

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
           +   G   +  + +  + ++      L S ++   D I I +REG IL  N+A  K+FG+
Sbjct: 297 IEVVGSAVDITERKKVESELSATKELLESFIKHNLDAITISDREGHILQANKAYEKIFGW 356

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
             ++I+ K     +           + +IL           T+    +  LL + + +  
Sbjct: 357 SSQEIIGKRL-PCVPDFLMEESLENIQKIL-TGESVVTRLETVRQRSDGSLLDISLTVSP 414

Query: 548 LPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
           +               DISE KQ + +     +   ++S  K   L
Sbjct: 415 ILDVRGNVIALSAICRDISERKQAERERHRLHQQL-RDSEMKYRAL 459



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 47/150 (31%), Gaps = 5/150 (3%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG-KTT 148
           D  G++ + ++   K  G  + ++IG RL  V D L  +   +I  +L  ++     +T 
Sbjct: 338 DREGHILQANKAYEKIFGWSSQEIIGKRLPCVPDFLMEESLENIQKILTGESVVTRLETV 397

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +G+ L + + ++  PI              I               RL ++     
Sbjct: 398 RQRSDGSLLDISLTVS--PILDVRGNVIALS--AICRDISERKQAERERHRLHQQLRDSE 453

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKN 238
              +       +   +          R   
Sbjct: 454 MKYRALIEQATDAVYVVELNEDNVPSRFIE 483


>gi|56695057|ref|YP_165404.1| sensor histidine kinase/response regulator [Ruegeria pomeroyi
           DSS-3]
 gi|56676794|gb|AAV93460.1| sensor histidine kinase/response regulator [Ruegeria pomeroyi
           DSS-3]
          Length = 739

 Score =  320 bits (820), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 98/451 (21%), Positives = 189/451 (41%), Gaps = 22/451 (4%)

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
           A +      ++R      A L           A+         Q      ++  E    D
Sbjct: 8   AEERRARLAAERLLELKQAELSAANRKLGR-HALALTKQIGEKQAEVATVRDENEKVKSD 66

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
             +   K+E+   +L   ++   DG A  + +  ++  N A   +F    E      +  
Sbjct: 67  LTVANAKIEVAERRLWHSIQTIQDGFAFFDSDSKLIGANTAYLNVFDGLDEVAPGISYMR 126

Query: 500 FLE-------QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
            L+        +T  +      +++         +  +     ++ + +   I +     
Sbjct: 127 ILQLMTEEGIIDTGELAAEEWRQMMHERWISPTPEPVVIRMWNDQYVKM---IDQRGHGG 183

Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
                  +I+   + + +L  A++ AE  +  KS FLA +SHEIRTP+  ++G +E++ +
Sbjct: 184 DVVSLALNITSTVRYEAELRAAREKAEAANRAKSAFLANMSHEIRTPMNGVVGMAELLCD 243

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
                  +     YA+ I  SG  +L I+ND+LD SKIE+ KM LH EP  L+  + E  
Sbjct: 244 TAL----DEEQQLYASTIKNSGEALLVIINDVLDYSKIEAEKMMLHPEPFDLERCIHEVA 299

Query: 673 SLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
            L+Q    +K + +   +   +P + + D   V+Q+  N+L NA+ FT  G  +I  T  
Sbjct: 300 MLMQPIVRDKGLTLLVDYDLFLPTLFVGDPGRVRQVLTNLLGNAVKFTTKGHILIRVTGV 359

Query: 732 TSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
                    + + + DTG+G+   +L      F Q+ N +  + +GTGLGL +++ ++  
Sbjct: 360 PDPATGRCAIHVAIEDTGIGIPREKLAHIFGEFNQVENERNRQFDGTGLGLAISQRLIQM 419

Query: 788 NMGKFYIFSTPAKGTL--IEIIFPLYDTSHP 816
             G  ++ S   +G+     +  P+ + + P
Sbjct: 420 MGGTVWVESEEGRGSCFGFRVTLPMSEEAQP 450


>gi|258513937|ref|YP_003190159.1| PAS/PAC sensor hybrid histidine kinase [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257777642|gb|ACV61536.1| PAS/PAC sensor hybrid histidine kinase [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 766

 Score =  320 bits (820), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 104/510 (20%), Positives = 194/510 (38%), Gaps = 28/510 (5%)

Query: 320 NLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
                 ++          + G + + N        +   +       +  +     L  N
Sbjct: 19  RRLSNILECIGDGLITAATDGKVQFMNKVAEKFLCWDLAEA--KGKNIDEVFRMINLETN 76

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
             +                 +   +         ++       +          +  +  
Sbjct: 77  EILYTHYDQIIATQSPRGLRKDTVLLSRDGMLRYVSASISPVKDMNNFVEAIVIVFRDIT 136

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
             R  +  +  +  +L ++ +A   GI I+N   II+  N A+ K+ G   + IL K   
Sbjct: 137 RRRSIEDAINSKQAKLKAVFDAAPVGIMIVNSCHIIIELNDALGKILGRRPDQILLKKVG 196

Query: 499 VFLEQNTP------------SVMNHYLTEILSLDLRQTLEKITLGSTKEEK-----LLSL 541
             L                      Y  + +  +  +      L   K+          L
Sbjct: 197 EGLGCKHRLENKKSCENGEIKCPLRYTIQKVIEEQTECKGIEILFEMKKGDNIRKVWFKL 256

Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
             +  ++       + + DI+E K+   +L  AK+ AE  S  KS+FLA +SHEIRTPL 
Sbjct: 257 NAVPIEIEKEKHVLMVIDDINEHKRLIKELKKAKEAAEAASRAKSEFLANMSHEIRTPLN 316

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
            +IG    + +            E  +      + +++++ND+LD SKIE+GK+ +    
Sbjct: 317 GLIG----MLDLTLLSDLTVDQKENLSIARTCVDSLMNVLNDILDFSKIEAGKLLIENVG 372

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTP 720
            +L E V + +      A+EK I I+ S  +++P  +  D   ++Q+  N+L NAI FT 
Sbjct: 373 FNLPELVEKTVKSYSAKASEKDIGIKYSVCSDVPETLSGDPNRLRQVLNNLLGNAIKFTQ 432

Query: 721 SGGQ-IIISTTHTSNEEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
            G   I +     + E V     V DTG+G++  + EK  + F Q+  S   +  GTGLG
Sbjct: 433 IGSVGIEVELLEKTREYVTLKFIVTDTGIGISASDREKLFQGFSQVDGSYTRKYGGTGLG 492

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           L ++K +++   G+ ++ S    G+     
Sbjct: 493 LAISKQLIEKMDGQIWVESNNHGGSKFIFT 522



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 62/169 (36%), Gaps = 12/169 (7%)

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ---NT 505
           +E  +L +ILE   DG+     +G +   N+   K   + + +   K            T
Sbjct: 16  MECRRLSNILECIGDGLITAATDGKVQFMNKVAEKFLCWDLAEAKGKNIDEVFRMINLET 75

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SLTMHDI 561
             ++  +  +I++    + L K T+  +++  L  +   I  +   + +     +   DI
Sbjct: 76  NEILYTHYDQIIATQSPRGLRKDTVLLSRDGMLRYVSASISPVKDMNNFVEAIVIVFRDI 135

Query: 562 SEWKQEKNKLSHAKKIAEKESSH--KSDFLARVSH---EIRTPLTAIIG 605
           +  +  ++ ++  +   +           +    H   E+   L  I+G
Sbjct: 136 TRRRSIEDAINSKQAKLKAVFDAAPVGIMIVNSCHIIIELNDALGKILG 184


>gi|310827230|ref|YP_003959587.1| multi-sensor signal transduction histidine kinase [Eubacterium
           limosum KIST612]
 gi|308738964|gb|ADO36624.1| multi-sensor signal transduction histidine kinase [Eubacterium
           limosum KIST612]
          Length = 585

 Score =  320 bits (820), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 90/480 (18%), Positives = 193/480 (40%), Gaps = 39/480 (8%)

Query: 336 YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIA 395
           Y  G + +     + L     ++D+  +   + +  A        +    L  ++   + 
Sbjct: 134 YQDGQITHIVRIAVPL---DVMEDVSYSIINNLIFVALASILIAIVIFAFLLNNETRPLD 190

Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
                       +    +T +  +K     +++     + +   ++IN++ +E     L 
Sbjct: 191 EVTIFARKIARGDYKTKLTMLRDDKIGDLVDSLNTMAEQLDASFSKINRKNIE-----LS 245

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYP-VEDILRKPFTVFLEQNTPSVMNHYLT 514
           S+L + + GI  ++R+  I+  N     +F     ++I  K             +   L 
Sbjct: 246 SVLSSMNQGIIAVDRDNKIILINDTARGIFNIDLKKEIKGKNILEVYRDPFVYELQDKLA 305

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS---SCYSLTMHDISEWKQEKNKL 571
           E         L+  T     EE++  +             +   + + DI+  K  +   
Sbjct: 306 ETEDGR----LDYETRI---EERIYKVTSSQMLDKGDQTYNGNIIILEDITMIKGLE--- 355

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
                      + + DF+A VSHE++TP+T I GF E I+              + + I 
Sbjct: 356 -----------NIRRDFVANVSHELKTPITTIRGFIETIQENHI--TDEATLGRFYSIIA 402

Query: 632 RSGNLVLDIVNDLLDISKIESGKM--NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
                +  +VND+L +S +E+ +       E + +++ +     ++++ A  KRI +R  
Sbjct: 403 DESERLTRLVNDILILSHLENNQRSGEDKREVIGVNQEILRIFDILKMTAESKRIELRYQ 462

Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749
              +I  ++ +    +Q+ +N++ NAI +T  GG++ +S  + +     + V DTG G+ 
Sbjct: 463 KEGDI-SVIINPDDFRQMMINLVDNAIKYTDEGGRVDVSV-YENGAHFCILVEDTGCGIP 520

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             ++ +  + F ++  S+     GTGLGL + K +V  N G   + S+   GT  ++  P
Sbjct: 521 EEDIPRIFERFYRVDKSRSKENGGTGLGLAIVKHIVQNNKGTIEVTSSVGIGTTFKVTLP 580


>gi|254457763|ref|ZP_05071191.1| sensory box sensor histidine kinase/response regulator
           [Campylobacterales bacterium GD 1]
 gi|207086555|gb|EDZ63839.1| sensory box sensor histidine kinase/response regulator
           [Campylobacterales bacterium GD 1]
          Length = 766

 Score =  320 bits (820), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 82/378 (21%), Positives = 173/378 (45%), Gaps = 21/378 (5%)

Query: 442 INKRKMEIEVMQLCSILEATSDGIAII--NREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
           + +++ +    +L   ++A ++   +   + +G+I   N    ++ GY  E+++ +   +
Sbjct: 259 LTRQEADNLKKELQQFVDALNESAVVSKSDTQGLITFVNDKFCEISGYSREELIGQGHNI 318

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYS 555
               + P+ +   L + +        +       K  +   +  +I  +   +     Y 
Sbjct: 319 IRHPDMPAELFKELWKTIRNKK--IFKATIKNCKKSGEAYYVDSVIVPMLDVNNEIVEYL 376

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
              ++++E       L +++  A      K +FL+ +SHE+RTPL AI GFS ++K Q  
Sbjct: 377 AVRYEVTE-------LINSRDEALMAEKAKDEFLSNMSHELRTPLNAINGFSSLLKRQ-- 427

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
             + + +  +Y  +I  S + ++ ++ND+LD+SK++SGK  L +        +   +   
Sbjct: 428 --IKDEKQSKYIEHILESSSQLIGLINDILDLSKLQSGKFILDYHRFEPYSNIYSLVERF 485

Query: 676 QLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
                   + +     +++  +   D   + QI  N+LSNAI FTP+GG++ +S  H  +
Sbjct: 486 SPNIETASLNLVLDLDDSLKIVANGDWLRISQIITNLLSNAIKFTPAGGEVRLSANHNDD 545

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
             + + V D G+G++    EK   PF Q  +S   +  GTGLGL +   ++     +  +
Sbjct: 546 N-LRIIVSDNGLGISKEVQEKIFMPFEQADSSTTRKFGGTGLGLSIVSNLLKQMDAQIKL 604

Query: 795 FSTPAKGTLIEIIFPLYD 812
            S    G+  E+  P+ +
Sbjct: 605 ESEDGNGSTFELNIPIKE 622



 Score = 42.7 bits (99), Expect = 0.24,   Method: Composition-based stats.
 Identities = 11/92 (11%), Positives = 29/92 (31%), Gaps = 3/92 (3%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGK 146
             D  G +  ++++  +  G    ++IG     +            +   ++ +  +   
Sbjct: 286 KSDTQGLITFVNDKFCEISGYSREELIGQGHNIIRHPDMPAELFKELWKTIRNKKIFKAT 345

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGF 178
                  G   YV   +  +P+   N E   +
Sbjct: 346 IKNCKKSGEAYYVDSVI--VPMLDVNNEIVEY 375


>gi|289435761|ref|YP_003465633.1| histidine kinase [Listeria seeligeri serovar 1/2b str. SLCC3954]
 gi|289172005|emb|CBH28551.1| histidine kinase [Listeria seeligeri serovar 1/2b str. SLCC3954]
          Length = 591

 Score =  320 bits (820), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 79/368 (21%), Positives = 173/368 (47%), Gaps = 29/368 (7%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           +++    +L +I++    G+ +IN +  ++ TNR + ++ G    +I  KPF   ++   
Sbjct: 246 EIKQNEQRLNAIVQNLVSGVMLINADKQVIMTNRTMYQILG--ETEITGKPFYEVIKSFA 303

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISE 563
            S +        + + +   +K  +     E +L   +              L +HDI++
Sbjct: 304 LSQLIDA-----TFETKTMQQKEIILYFPREMILDASVSPILAEDGEITGIILLLHDITQ 358

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            +  +N               +S+F+  VSHE++TP+TA+ GF+E + +           
Sbjct: 359 IRHLENV--------------RSEFVTNVSHELKTPVTALKGFAETLLDGAM--YDEALL 402

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            ++   I    + +  ++ D+L +S+IE   +  +   V +D+ + +++  +   A EK 
Sbjct: 403 KKFLTIIKEESDRLHRLIMDILALSRIEQNPVTENVGTVDVDDVIDQSVRTIFELATEKN 462

Query: 684 ILIRTSFANNIPRILA--DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
           I + ++    +P ++   +   ++QI +N+LSNAI++TP  G++ +        EVI+ V
Sbjct: 463 IQV-SAPEKTVPPVIIETNRDQLQQILINLLSNAINYTPVDGKVEVKL-MERESEVIIEV 520

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            D G+G+   ++++  + F ++  ++     GTGLGL + K +V+   G+  + S    G
Sbjct: 521 TDNGIGIPTKDIDRVFERFYRVDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVG 580

Query: 802 TLIEIIFP 809
           +   +  P
Sbjct: 581 STFRVTLP 588


>gi|194291558|ref|YP_002007465.1| chemotaxis methyltransferase protein; contains methylesterase domain
            (cheb), methylase of chemotaxis methyl-accepting proteins
            domain (cher), signal transduction histidine domain
            (nitrb), signal receiver (rec) domain [Cupriavidus
            taiwanensis LMG 19424]
 gi|193225462|emb|CAQ71408.1| Putative chemotaxis methyltransferase protein; contains
            Methylesterase domain (CheB), Methylase of chemotaxis
            methyl-accepting proteins domain (CheR), signal
            transduction histidine domain (NitrB), signal receiver
            (Rec) domain [Cupriavidus taiwanensis LMG 19424]
          Length = 1373

 Score =  320 bits (820), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 130/742 (17%), Positives = 256/742 (34%), Gaps = 73/742 (9%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            +     +  +S+   + +     +     +  V   L ++    I   L+  ++   +  
Sbjct: 545  VSRESEIVHLSDRAGRFLQYVGGEPSHNIIAVVRPELRLELRTAIYQALQTNHSVEARRV 604

Query: 149  LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
            L   +G   +  +++ A P++                         A G  +   F  + 
Sbjct: 605  LLERDG--KHFFVNMTARPVHDV----------------------EANGDFVLVLFDEVE 640

Query: 209  EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
            +      + +             P       ++ L        + L+       TS E  
Sbjct: 641  DSMSAAPTGQ-------------PGEERDPMIAQLERELQRTKEQLQATIEQSETSTEEL 687

Query: 269  LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG--ENLTPETV 326
                E+   IN    +  +   T +   +   E L+  N    S   + G   +     +
Sbjct: 688  KASNEELQAINEELRSATEELETSKEELQSINEELTTVNAELKSKVEETGKINDDLQNLI 747

Query: 327  DKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
                I   FV     +    P  + +      D       ++  L+  KL+D+ A     
Sbjct: 748  TANDIGTVFVDRSMCIKRYTPRAIDVFSIIPSDIGRSLLDITHRLEYDKLADDAAEAFDS 807

Query: 386  LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
            L   +R           ++ N        F+P+                 +    R  + 
Sbjct: 808  LRLIERE----------VRSNDGRWYLARFLPY--RTTEDRIDGAVLSFIDITSRRAAEE 855

Query: 446  KMEIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            ++     ++  + E+T D  I   + +G + S N    ++FG    D+L +P        
Sbjct: 856  RLREGEKRMNIVAESTRDYAIITFDDQGRVTSWNTGAERIFGVGEADMLGQPAETLYTPE 915

Query: 505  TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDIS 562
              +       E+    +   +E+      ++        ++ +L       ++  + D+ 
Sbjct: 916  DRAAGVPK-EELAQARMYGRIEEDRWHVRRDGSRFRSTGVLSRLDKGGVSGFAKILRDLD 974

Query: 563  EWKQEKNKLSH-------------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
            E    +                   + +  +    + +FLA VSHE++ PL  I   +E 
Sbjct: 975  ELALTRIATRPASGSEVAGTRGPGNESLEGRAERLRDEFLAVVSHELKHPLNLISASAE- 1033

Query: 610  IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
            + ++      +      A  I R+      I++DLLD+S++ +GK+++   P+   E V 
Sbjct: 1034 LISRAPDARASDVIQRAAATIRRTVMGQAHIIDDLLDMSRLRTGKLSIAHAPLDWAEVVD 1093

Query: 670  EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
               S ++     K+I++  S  +    I ADL  ++QI  N++SNAI +T +GG I +S 
Sbjct: 1094 RVCSAIEEEVARKQIVLERSLPDGPVMIDADLTRIEQIVWNLVSNAIKYTSAGGLINVSL 1153

Query: 730  THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
            T T     +L VRDTG G+    L      F Q       +  G G+GL L + +V    
Sbjct: 1154 TRTD-GTAVLAVRDTGAGIDAQSLPHIFDMFRQGAAPTARK-GGLGIGLSLVRELVTIQG 1211

Query: 790  GKFYIFST-PAKGTLIEIIFPL 810
            G     S    KG L  + FP+
Sbjct: 1212 GTVRAESEGQGKGALFTVSFPV 1233


>gi|157148781|ref|YP_001456100.1| aerobic respiration control sensor protein ArcB [Citrobacter koseri
           ATCC BAA-895]
 gi|157085986|gb|ABV15664.1| hypothetical protein CKO_04614 [Citrobacter koseri ATCC BAA-895]
          Length = 778

 Score =  320 bits (820), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 86/435 (19%), Positives = 179/435 (41%), Gaps = 17/435 (3%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L +          +L T+Q     +     I   +  +         ++ E
Sbjct: 81  EESRQRLSRLVQKLEEMRERDLKL-TVQLKDNIAQLNQEIADREKAEAERQSTFEQLKVE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             +    + ++E +   L S L+A+ D +   N +      NRA+  L G   + ++   
Sbjct: 140 IKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCY 554
                       +     ++   ++  T E+        +    +R +    ++      
Sbjct: 200 PADVYSPEAAEKVIETDEKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGL 259

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+        +   E+ S  K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 260 MGFGRDITERKR-------YQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTD 312

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     +Y   I  S   + +I ND++D+ K+E  K+ L  +PV     +++  +L
Sbjct: 313 LTS----EQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFMADLENL 368

Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
             L A +K +         +P  ++ D   ++QI  N++SNA+ FT  G Q+ +   +  
Sbjct: 369 SGLQAQQKGLRFVLDPTLPLPHKVITDGTRLRQILWNLISNAVKFTQQG-QVTVRVRYDE 427

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMGKF 792
            + +   V D+G+G+   E +K    + Q+ +S   +   GTG+GL +++ +     G  
Sbjct: 428 GDVLHFDVEDSGIGIPQDEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDI 487

Query: 793 YIFSTPAKGTLIEII 807
            + S P KG++  + 
Sbjct: 488 TVSSQPGKGSVFTLT 502


>gi|33597571|ref|NP_885214.1| virulence sensor protein [Bordetella parapertussis 12822]
 gi|37538294|sp|P40330|BVGS_BORPA RecName: Full=Virulence sensor protein BvgS; Flags: Precursor
 gi|33573999|emb|CAE38319.1| virulence sensor protein [Bordetella parapertussis]
          Length = 1238

 Score =  320 bits (820), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 108/556 (19%), Positives = 200/556 (35%), Gaps = 31/556 (5%)

Query: 274 DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV-DKCPIP 332
                            T+      +   L  + +P       +        V D     
Sbjct: 399 TRQDPAAPADADHLDGRTIAMVRNSAAIPLLQQRYPQAKVVTADNPTEAMLLVADGQADA 458

Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
                    +Y N  F    +  S  D+  A            +        +L ++  +
Sbjct: 459 VVQTQISASYYVNRYFAGKLRIASALDLPPAEIALA------TARGQTELISILNKALYS 512

Query: 393 CIAASARLHTIQW---NRENSLAMTFIPFEKANQFPENMPQNG-------IEPEDVDTRI 442
                      +W   + +      +            +           +  +    + 
Sbjct: 513 ISNDELASIVSRWRGSDGDPRTWYAYRNEIYLLIGLGLLSALLFLSWIVYLRRQIRQRKR 572

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            +R +  ++  +  +++ T + I + ++EG +L  N A    FG   + +L K       
Sbjct: 573 AERALNDQLEFMRVLIDGTPNPIYVRDKEGRMLLCNDAYLDTFGVTADAVLGKTIPEANV 632

Query: 503 QNTPSVMNH----YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLT 557
              P++        LT + +    +  ++      +   +    +               
Sbjct: 633 VGDPALAREMHEFLLTRMAAEREPRFEDRDVTLHGRTRHVYQWTVPYGDSLGELKGIIGG 692

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
             DI+E  +   +L  AK+ A+  +  K+ FLA +SHEIRTP+ AIIG  E+       P
Sbjct: 693 WIDITERAELLRELHDAKESADAANRAKTTFLATMSHEIRTPMNAIIGMLELAL---LRP 749

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
                  +       S   +L+++ D+LDI+KIE+GK +L     +L      AI L   
Sbjct: 750 ADQEPDRQSIQVAYDSARSLLELIGDILDIAKIEAGKFDLAPVRTALRALPEGAIRLFDG 809

Query: 678 YANEKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
            A +K I +        +  +L D   +KQ+  N++ NAI FT  G Q++++ T   + E
Sbjct: 810 LARQKGIELVLKTDIVGVDDVLIDPLRMKQVLSNLVGNAIKFTTEG-QVVLTVTARPDGE 868

Query: 737 ---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQ-QIRGEGTGLGLPLAKAMVDANMGKF 792
              V   V DTG G++  +  +  KPF Q+  S       GTGLGL +++ +V+   G  
Sbjct: 869 AAHVQFSVSDTGCGISEADQRQLFKPFSQVGGSAEAGPAPGTGLGLSISRRLVELMGGTL 928

Query: 793 YIFSTPAKGTLIEIIF 808
            + S P  GT + +  
Sbjct: 929 VMRSAPGVGTTVSVDL 944



 Score = 50.8 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/232 (10%), Positives = 56/232 (24%), Gaps = 12/232 (5%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D  G +   ++    T G  A  ++G  + + + +        + + L  +     +   
Sbjct: 599 DKEGRMLLCNDAYLDTFGVTADAVLGKTIPEANVVGDPALAREMHEFLLTRMAAEREPRF 658

Query: 150 WPIEGTNLYVP--IDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
              + T       +    +P      E  G  G  I        +         +     
Sbjct: 659 EDRDVTLHGRTRHVYQWTVPYGDSLGELKGIIGGWI--DITERAELLRELHDAKESADAA 716

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
           +  K    +    +                 +++ L       D       Y    S   
Sbjct: 717 NRAKTTFLATMSHEIRTPMNAIIGML-----ELALLRPADQEPDRQSIQVAYDSARSLLE 771

Query: 268 SLPEQEDFHTINLN---QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
            + +  D   I          +     L   +   F+ L+ +    L    D
Sbjct: 772 LIGDILDIAKIEAGKFDLAPVRTALRALPEGAIRLFDGLARQKGIELVLKTD 823


>gi|87307413|ref|ZP_01089558.1| probable sensor/response regulator hybrid [Blastopirellula marina
           DSM 3645]
 gi|87290153|gb|EAQ82042.1| probable sensor/response regulator hybrid [Blastopirellula marina
           DSM 3645]
          Length = 672

 Score =  320 bits (820), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 110/455 (24%), Positives = 199/455 (43%), Gaps = 12/455 (2%)

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
             E   G    L A  LS+  A   +       T  +        QW +   + +   P 
Sbjct: 60  AEEHLLGDPHRLAAQMLSEQPAWSDLPFLIL--TLASGRNAQILEQWQQAAYVTLITRPL 117

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
           +          +          R    ++E    Q   + +A    +    R+G I   N
Sbjct: 118 QIQPFISVVRSRLQDRKRQYMVRDLLNRLEHHGRQFSQLADAMPQIVFTTTRQGEIEYLN 177

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG-STKEEK 537
           +     FG   ++I    +T  + ++  +         L        E       T E +
Sbjct: 178 QRALDYFGVSRQEIAGFDWTSTIFESDFANAKIRWERALEKGSSFQCEFRMQHARTLEHR 237

Query: 538 LLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
               R +           +  T+ DI + K  + KL+ A + A   +  K++FLA +SHE
Sbjct: 238 WHLARSLPVLDESGKVIRWFGTVTDIHKQKLIEEKLNLALQQAAAANVVKTEFLANMSHE 297

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           IRTP+TAI+G++E++  Q      +   + +   I ++G  +++I+ND+LD+SKIE+GK+
Sbjct: 298 IRTPMTAILGYAELLAQQE----TDLEKLHFLKVIRQNGEFLVEIINDILDLSKIEAGKL 353

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSN 714
           ++  EP+ L   + E  SL+ + A E  I     FA  +P  I +D + ++QI +N++ N
Sbjct: 354 DITLEPLELSRMIEEIQSLMLVRAAENDIEFNVDFAATVPERIRSDSKRLRQILINLIGN 413

Query: 715 AIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           A+ FT  G  + +  +    E +   V DTG+GMT  ++E+   PF Q  +S   +  G+
Sbjct: 414 AVKFTQEGS-VRLVVSP-DAERIQFDVIDTGIGMTQQQVEQLFLPFQQADSSVSRKFGGS 471

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GLGL +++ +     G+  + S   +G++  +  P
Sbjct: 472 GLGLAISQRLAVMLGGEITVQSQQGQGSVFTLSIP 506



 Score = 46.6 bits (109), Expect = 0.018,   Method: Composition-based stats.
 Identities = 23/259 (8%), Positives = 59/259 (22%), Gaps = 8/259 (3%)

Query: 190 DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH 249
             D     + L++        +      E+ K           HL       +       
Sbjct: 20  PRDAAITERILNQNHIETFACRNIEHFCEEAKAGAGVLLIAEEHLLGDPHRLAAQMLSEQ 79

Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR-NH 308
                       L S  ++   ++      +   T+        +  +   +    +   
Sbjct: 80  PAWSDLPFLILTLASGRNAQILEQWQQAAYVTLITRPLQIQPFISVVRSRLQDRKRQYMV 139

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
             L    +       +  D  P   F     G + Y N   L        + I      S
Sbjct: 140 RDLLNRLEHHGRQFSQLADAMPQIVFTTTRQGEIEYLNQRALDYFGVSRQE-IAGFDWTS 198

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
           T+ ++   +     +         +      R+   +                 ++  + 
Sbjct: 199 TIFESDFANAKIRWE---RALEKGSSFQCEFRMQHARTLEHRWHL--ARSLPVLDESGKV 253

Query: 428 MPQNGIEPEDVDTRINKRK 446
           +   G   +    ++ + K
Sbjct: 254 IRWFGTVTDIHKQKLIEEK 272


>gi|312891789|ref|ZP_07751296.1| PAS/PAC sensor signal transduction histidine kinase
           [Mucilaginibacter paludis DSM 18603]
 gi|311295731|gb|EFQ72893.1| PAS/PAC sensor signal transduction histidine kinase
           [Mucilaginibacter paludis DSM 18603]
          Length = 508

 Score =  320 bits (820), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 95/520 (18%), Positives = 201/520 (38%), Gaps = 59/520 (11%)

Query: 320 NLTPETVDKCPIPFFVYS----HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
            L    V        +         + Y N +F  +T Y + + I    G +        
Sbjct: 17  RLFAAAVSASNHGVVITDHTQPDEPIIYCNKAFESITGYTNKEII----GHNCRFLQDGD 72

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
           ++    + +     +        R +         +    +     ++        GI+ 
Sbjct: 73  NEQEGRRRLREAIKNGEHCQVEIRNY---KKNGRMIWNELMISPVKDRDGNVTNFIGIQN 129

Query: 436 EDVDTRINKRKM------------------EIEVMQLCSILEATSDGIAIINREGIILST 477
           +    +  +  +                  +     L SI+E   + + +++ +  +LS 
Sbjct: 130 DITRRKEAEDALASEKQNLEERVLERTEDLQESEAYLASIIETIRESLVVLDEKMRVLSV 189

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL-----SLDLRQTLEKITLGS 532
           N    + F     DI  +   V  E N        L  +L     + +  +  E      
Sbjct: 190 NDHFCRFFKVAENDIRGR---VLFEHNDGQWNLPELRNLLINVLPNNNPFEGFEIENEFP 246

Query: 533 TKEEKLLSLRIIIKKLPF--SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
               KLL L      L     +   L + DI+E ++ + +              K DF++
Sbjct: 247 NIGRKLLVLNARQVTLKGKYQNRILLAIEDITEQREIEQR--------------KEDFIS 292

Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650
             SHE++TPLT+I G  + +  ++     + +Y+       +S   +  ++ DLLD+SKI
Sbjct: 293 IASHEMKTPLTSIKGNLQ-LLQRKAQQNNDTQYLSGFETASKSIARLEKLIYDLLDVSKI 351

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710
           +SGK+ L F   +  + + E+++ VQ      +++++ S       + AD   ++Q+ LN
Sbjct: 352 QSGKVELIFSKFNFQQLIIESVNGVQATTQTHKLVMKGSSD---IEVTADFGRLEQVLLN 408

Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           +L+NA+ ++P+G ++I+ T       V + + DTGVG+   + ++  + F +       +
Sbjct: 409 LLNNAVKYSPTGKEVIVHTCILPE-YVKVSITDTGVGIHERDHKRIFERFYRADQ-ISEK 466

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             G G+GL ++  ++  + G  ++ S   KG +     P+
Sbjct: 467 FPGVGIGLYVSNEIIKEHRGTLWVESQEGKGAVFSFTIPI 506



 Score = 54.6 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/154 (13%), Positives = 47/154 (30%), Gaps = 5/154 (3%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILH-IDPNNHIGDLLKRQNTWYGKTTLWPIE 153
           +   ++      G    ++IG     + D  +  +    + + +K       +   +   
Sbjct: 42  IIYCNKAFESITGYTNKEIIGHNCRFLQDGDNEQEGRRRLREAIKNGEHCQVEIRNYKKN 101

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
           G    +  +L   P+  R+   + F G     + R      AL          + E  + 
Sbjct: 102 GR--MIWNELMISPVKDRDGNVTNFIGI-QNDITRRKEAEDALASEKQNLEERVLERTED 158

Query: 214 HSSVEKEKYDIFS-QQSPPPHLRMKNKVSSLTEY 246
               E     I    +     L  K +V S+ ++
Sbjct: 159 LQESEAYLASIIETIRESLVVLDEKMRVLSVNDH 192


>gi|294646444|ref|ZP_06724085.1| PAS domain S-box [Bacteroides ovatus SD CC 2a]
 gi|292638215|gb|EFF56592.1| PAS domain S-box [Bacteroides ovatus SD CC 2a]
          Length = 957

 Score =  320 bits (820), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 98/520 (18%), Positives = 192/520 (36%), Gaps = 31/520 (5%)

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIE 361
           L        +   D  E L        P    +Y   G L   N   L +    +  D+ 
Sbjct: 444 LDSTGSVQANRALDRSEKLFQNIFANIPAGVEIYDKDGYLIDLNNKDLEIFGVVNKSDVI 503

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                        + D    + ++ +R +    +        + +R N + +     +  
Sbjct: 504 GVNFFDNPNVPQNIRDRVRNEDLVDFRLN---YSFEQAGGYYETSRSNVIELYSKVSKLY 560

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA---IINREGIILSTN 478
           +          I  ++ +      ++         I +    G A   ++NR+G  +   
Sbjct: 561 DNEGNFSGYILISIDNTERIDAMNRIRDFENFFLMISDYAKVGYAKLNLLNRKGYAI--- 617

Query: 479 RAVSKLFGYPVEDILRKPFTVF--LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
           +   K  G   +  L +   V+  +          +   +     R+  +          
Sbjct: 618 KQWYKNLGEEEDIPLSEVVAVYSQMHPEDRKRFLDFYDGVR-DGKRRHFQGEMRIRRPGT 676

Query: 537 K--LLSLRIIIK-----KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
           K     +   +                  +DI+E K+ + +L  A+  AE     KS FL
Sbjct: 677 KNEWNWVSSNVMVTNYKPEENEIEIIGINYDITELKETEAELIQARDKAEMMDRLKSAFL 736

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
           A +SHEIRTPL AI+GFS+++              EY   +  +  L+L +++D+LD+SK
Sbjct: 737 ANMSHEIRTPLNAIVGFSDLLVETEELA----ERQEYIKIVRENNELLLQLISDILDLSK 792

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709
           IE+G        V ++    + +  + + A E+ + +       +  +++D   + Q+  
Sbjct: 793 IEAGTFEFTNGDVDVNLLCEDIVRSMGMKAKEE-VELVFDDHLPVCHVISDRNRIHQVIS 851

Query: 710 NILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
           N ++NA+ FT  G  I +        E+   V DTG+G+   +L    + F ++ +    
Sbjct: 852 NFVNNAMKFTSEGS-IHVGYKLKD-GELEFYVEDTGIGIEKEQLPHIFERFVKLNSFVH- 908

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
              GTGLGL + +++V+   G+  + S   KG+      P
Sbjct: 909 ---GTGLGLSICQSIVEQLGGRIGVDSEKGKGSRFWFTIP 945



 Score = 47.7 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 53/154 (34%), Gaps = 10/154 (6%)

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG-YP 488
             G+  +   +    R ++       +I      G+ I +++G ++  N    ++FG   
Sbjct: 439 IVGLFLDSTGSVQANRALDRSEKLFQNIFANIPAGVEIYDKDGYLIDLNNKDLEIFGVVN 498

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG---STKEEKLLSLRIII 545
             D++   F  F   N P  +   +     +D R        G    T    ++ L   +
Sbjct: 499 KSDVIGVNF--FDNPNVPQNIRDRVRNEDLVDFRLNYSFEQAGGYYETSRSNVIELYSKV 556

Query: 546 KKLPFSS----CYSLTMHDISEWKQEKNKLSHAK 575
            KL  +      Y L   D +E     N++   +
Sbjct: 557 SKLYDNEGNFSGYILISIDNTERIDAMNRIRDFE 590


>gi|218781752|ref|YP_002433070.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218763136|gb|ACL05602.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 886

 Score =  320 bits (820), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 100/538 (18%), Positives = 191/538 (35%), Gaps = 68/538 (12%)

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365
                   +     +     +DK       +  G     N ++     Y     ++   G
Sbjct: 207 STDAKRRGWSIPLPDAQDALLDKL------WDAGEAVIIN-AYEQGIGYLD-AALQGCEG 258

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
            S LL      D + +   +L ++                             +      
Sbjct: 259 ASLLLTPIYTPDKSILGLSILSKAPDDPF---------------------SDTDLELTAL 297

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
                     +        R +     +  ++ E +SD   II  +      + +V   +
Sbjct: 298 IATHGVEALKDIN----AARALTASEERFRALTENSSDITLIIGPDNTYTYASPSVFSTY 353

Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
           GY    ++ +  +  +     S++   L + L+   +    +      ++     L  ++
Sbjct: 354 GYKPGMVIGQYTSRNMHPKDVSMVEKALEKALTNPGQPIKLEGVRFRHRDGGWYWLEGVL 413

Query: 546 KKLPFSSCYSLTM---HDISEWKQEKNKLSHAKKIAEKESSH------------------ 584
                       +    D++E K  + KL  A +  EK++                    
Sbjct: 414 NSQMDVPGVGGVVFSGRDVTERKASEQKLQDAYQQLEKKNVELQNAHELLEARARDLEVG 473

Query: 585 ---KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
              KS FLA VSHE+RTPL +II  S ++   R   L +    E A  I  SG  +L ++
Sbjct: 474 SMYKSQFLANVSHELRTPLNSIILLSGILCENREKNLTDSDL-ECAQAIQSSGKALLLLI 532

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILAD 700
           N++LD+SKIE+GKM ++         V          A  K +        +IP R+ +D
Sbjct: 533 NEVLDLSKIEAGKMAVNTSFFETKTFVQAIEREFLPLAKNKGLDFSVRMDADIPLRVQSD 592

Query: 701 LRSVKQIALNILSNAIHFTPSGGQI-IIST--------THTSNEEVILRVRDTGVGMTNY 751
            + ++Q+  N +SNA+ FT  G  +  +S          ++ ++     V D+G+G+   
Sbjct: 593 SQRLEQVLRNFISNALKFTKQGSVVLRVSRPRKEDALPGYSPSKCAAFSVTDSGIGIPQE 652

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           ++E+  + F Q   +      GTGLGL +++ +     G     S P  G+   ++ P
Sbjct: 653 KMEEIFEAFTQADGTTSREFGGTGLGLTISREIARLIGGAVRAESEPGAGSTFTLVIP 710


>gi|209883557|ref|YP_002287414.1| MmoS [Oligotropha carboxidovorans OM5]
 gi|209871753|gb|ACI91549.1| MmoS [Oligotropha carboxidovorans OM5]
          Length = 740

 Score =  320 bits (820), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 98/376 (26%), Positives = 171/376 (45%), Gaps = 18/376 (4%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           +++    +  S+ E+ SD IA+ +  G +   N       G P  D+L    T+ + +  
Sbjct: 102 ELKEAEERARSLFESQSDLIALRDARGRLTFVNDTFCHYAGKPRSDLLGSTRTLPVIEQG 161

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISE 563
                   T +    ++              + ++ R  + +   +          D+++
Sbjct: 162 DDATEPGGTRVHDQKIQTAF---------GPRWIAWRETLVRPNANQGAELQCVGRDVTD 212

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + ++ L  A+  A   +  KS FLA  SHEIRTPL  I+G S ++ + +     NP  
Sbjct: 213 RAESEHALGLARDHAVSANRAKSKFLAVASHEIRTPLNGILGMSNLLLDTQL----NPEQ 268

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
             YA  +  SG  ++ +V +LLD SKIE+GK++L   P  L   + E   L+   A  ++
Sbjct: 269 AAYAKAVKDSGEALVSLVEELLDFSKIEAGKIDLEHRPFHLGAMIEEITELLAPRAQARQ 328

Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           I I +     +P  ++ D   ++Q+ LN+ SNA+ FT  GG  +I+       E+   +R
Sbjct: 329 IEIASYVDERLPREVIGDAARLRQVLLNLASNAVKFTAEGGVALIAEPGIWPNEISFLIR 388

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG+G+     ++  + F Q          GTGLGL +++ +V    G+  + S   +GT
Sbjct: 389 DTGIGIAPDAQQRIFREFEQAGEEIAREYGGTGLGLAISERIVRRMGGRIALESAIGRGT 448

Query: 803 LIEIIFPL--YDTSHP 816
             E+  PL   DTS P
Sbjct: 449 TFEVSIPLEAADTSAP 464



 Score = 38.9 bits (89), Expect = 3.8,   Method: Composition-based stats.
 Identities = 21/245 (8%), Positives = 59/245 (24%), Gaps = 17/245 (6%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           DA G L  +++      G     ++G        +  I+  +   D  +   T      +
Sbjct: 125 DARGRLTFVNDTFCHYAGKPRSDLLGST----RTLPVIEQGD---DATEPGGTRVHDQKI 177

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
               G       +    P  ++     G     +        +               + 
Sbjct: 178 QTAFGPRWIAWRETLVRPNANQ-----GAELQCVGRDVTDRAESEHALGLARDHAVSANR 232

Query: 210 IKKGHSSVEKEKYD-----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
            K    +V   +       I    +     ++  + ++  +      + L +    LL  
Sbjct: 233 AKSKFLAVASHEIRTPLNGILGMSNLLLDTQLNPEQAAYAKAVKDSGEALVSLVEELLDF 292

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
            +    + +  H         ++    L   ++     ++      L            +
Sbjct: 293 SKIEAGKIDLEHRPFHLGAMIEEITELLAPRAQARQIEIASYVDERLPREVIGDAARLRQ 352

Query: 325 TVDKC 329
            +   
Sbjct: 353 VLLNL 357


>gi|294678968|ref|YP_003579583.1| sensor histidine kinase/response regulator receiver protein
           [Rhodobacter capsulatus SB 1003]
 gi|294477788|gb|ADE87176.1| sensor histidine kinase/response regulator receiver protein
           [Rhodobacter capsulatus SB 1003]
          Length = 743

 Score =  320 bits (820), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 105/460 (22%), Positives = 191/460 (41%), Gaps = 23/460 (5%)

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
            +          +L +  R   AA+ +L  +     +   +      +         +  
Sbjct: 10  AQERRARLAAERLLEQKKRELFAANQKL-ALHARALSEQIVQQRHGLQQALTEAASLKGE 68

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF------- 485
                 D +  +    I   +L   LE   DG A+ + +  ++  NRA    F       
Sbjct: 69  NSRVRGDLQRAESVAMIAQRRLWDALETIRDGFAVYDGDLRLVVANRAYLSFFHGEVAIT 128

Query: 486 -GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
            G   + +L+      +          +  E+++   R+ +E   +  T+    + L   
Sbjct: 129 AGVTYDAVLKIVAKHEMVDMAGRDPLDWHHEMIARIRREHIE-PIVLRTRNGHHIKL--- 184

Query: 545 IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
           I +            DI+   + + +L  A+  AE  +  KS FLA +SHEIRTP+  ++
Sbjct: 185 IDRWGEDGDLVCLAQDITHIIEREQELEEARNKAEAANRAKSAFLANMSHEIRTPMNGVV 244

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           G +E++         N     Y   I  SG  +L I+ND+LD SKIE+ ++ L+ E   L
Sbjct: 245 GMAELLGETEL----NEEQQLYVETIRSSGEALLTIINDVLDYSKIEAERLKLYPEVFDL 300

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG 723
           +  + E + L+Q  A +K + +   +   +P R +AD   ++QI  N+L NA+ FT +G 
Sbjct: 301 ERCLHEIMVLLQPSAKDKGVKLLVDYDLFLPTRFIADPGRMRQILTNLLGNAVKFTHTGH 360

Query: 724 QIIISTTHTSNEE---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
            +        + E   + + V DTG+G++   L+     F Q+  +   R EGTGLGL +
Sbjct: 361 VLARVVGFERDAEHYELHVTVEDTGIGISPDNLDHVFGEFNQVEATSNRRFEGTGLGLAI 420

Query: 781 AKAMVDANMGKFYIFSTPAKGTL--IEIIFPLYDTSHPHD 818
            + +V    G  ++ S   +G+     +  P  +   P D
Sbjct: 421 TRQLVHLMGGSVWVDSQLGEGSCFGFRVTLPRAEPVAPLD 460


>gi|254487059|ref|ZP_05100264.1| multi-sensor hybrid histidine kinase [Roseobacter sp. GAI101]
 gi|214043928|gb|EEB84566.1| multi-sensor hybrid histidine kinase [Roseobacter sp. GAI101]
          Length = 1047

 Score =  320 bits (820), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 89/527 (16%), Positives = 185/527 (35%), Gaps = 27/527 (5%)

Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLF-YANPSFL 349
           TL    + +    +              +      +    I  F           + ++ 
Sbjct: 406 TLNGVRRTTAIVRNVTAEMGAVKELAITKQRYDMALAGSEIGVFEVDLRTGSSVVSQTWR 465

Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
            + K    +          +       D+         +        S   + + +    
Sbjct: 466 KIMKVDDDEQ-----DTQGIFMNRVHPDDLPDLFEADRKCIMGETDRSVSEYRMSFGDSW 520

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469
              ++     + ++    +   G + +  D R ++  +E    +  +++EA   G+AI++
Sbjct: 521 RWMLSDAVVVERDEAGAALRMVGTQTDVTDLRHSRNALEASEKRFRTVIEAAPVGMAILD 580

Query: 470 REGIILSTNRAVSKLFGYPVEDILRK-PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528
            +G  +  N A+  L GY   ++L +      +  +    M   L     +D+++   + 
Sbjct: 581 DQGRFVEVNGAMCDLTGYTQPEMLDELTMMRIVPGDDIKRMRKALLAATQMDIQEVYCEE 640

Query: 529 TLGSTKEEKLLS----LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
                K          +     K   +  Y   + DI++ K+                  
Sbjct: 641 HRIIHKNGGERWGLFNITWTYDKNADAHVYIAQVVDITDKKKL--------------DQI 686

Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
           KS+F++ VSHE+RTPLT+I G    + +           +        + + + +IVND+
Sbjct: 687 KSEFVSTVSHELRTPLTSIKGAL-GLIDVSARDKLPETTMRLIEIARTNADRLTNIVNDI 745

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704
           LD+ KI SG+++    PV++ E V  A+  +  +A      +            AD    
Sbjct: 746 LDLEKISSGEVDFDLMPVNIGEIVEAAVQEMMPFAQTHENKLVCELPEQPVFATADRGRT 805

Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764
            Q+  N++SNA  ++    ++ I      +   I+ V++ G G+      +  + F Q  
Sbjct: 806 MQVLANLISNACKYSSDHTEVCIKIEQLEDI-AIVYVQNRGPGVPESFRNRIFQAFSQAD 864

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
            S      GTGLGL + + +V    G+    S P   T+     P+ 
Sbjct: 865 GSDTRAKGGTGLGLNITRQIVRRQGGEIGFESIPGGLTVFWFTCPIA 911



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 45/422 (10%), Positives = 113/422 (26%), Gaps = 56/422 (13%)

Query: 170 SRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS 229
              +   G  G G +         +      D +   L +      +    KY I     
Sbjct: 69  DLEKNLPGLGGIGFI---EAVPRAQVADYVADLRKDGLTDFNVHPDTDSDVKYIIKYIAP 125

Query: 230 PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYF 289
              +        +  +  A      +  + P LT     + ++       L +    +  
Sbjct: 126 IATNAEAVGLDITFEKGRAEAAQRARETQLPQLTPRIVLVQDETKQPGFLLLRPVFYERG 185

Query: 290 GTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFL 349
              ++     + Y        +        N+           F VY             
Sbjct: 186 --PRDGEFRGWVYAPFVGRKVMQNLTLNQSNIYD---------FQVYDG----------- 223

Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ----- 404
                              L+    LSD  A +    Y ++      + R  + +     
Sbjct: 224 --VGTDP----------DMLIYGSDLSDEAAGQYSTQYTANFFGRPWTVRYQSTKNFDDF 271

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT--RINKRKMEIEVMQLCSILEATS 462
           +     L +              + +  +  + ++    +  +++     +  SI+E T 
Sbjct: 272 FPGRAPLFLFLAGILLTGMLAVALREIRLRGDSMEEVAALRAKQISAREEENKSIMENTV 331

Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVE-DILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
             + I++ +  IL  N A  + FG   +  +   PF+ F+ +      N     +     
Sbjct: 332 VAVLILDEDRNILHANFAAIECFGCEEQGGMGGLPFSQFVTEAPDVPSNSGYNAL---GK 388

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE 581
             + + + L   +   +         L      +  + +++       +L+  K+  +  
Sbjct: 389 TMSGDMLYLDLQQNGWVT--------LNGVRRTTAIVRNVTAEMGAVKELAITKQRYDMA 440

Query: 582 SS 583
            +
Sbjct: 441 LA 442



 Score = 39.6 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 17/51 (33%), Gaps = 1/51 (1%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR 139
           +D  G   E++  +    G    +M+   L  +  +   D       LL  
Sbjct: 579 LDDQGRFVEVNGAMCDLTGYTQPEMLDE-LTMMRIVPGDDIKRMRKALLAA 628


>gi|58336427|ref|YP_193012.1| histidine kinase [Lactobacillus acidophilus NCFM]
 gi|58253744|gb|AAV41981.1| putative histidine kinase [Lactobacillus acidophilus NCFM]
          Length = 618

 Score =  320 bits (820), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 87/395 (22%), Positives = 171/395 (43%), Gaps = 31/395 (7%)

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
           ++  +           ++    +   + E  +L S+L   SDG+   +R G +   N  V
Sbjct: 235 DELGQLGKAFNTLSVRIERSQEES--DSERRRLDSVLSHMSDGVLATDRHGNVSVVNHMV 292

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
                   ED++ KP    L     S       +++S      +        +     S 
Sbjct: 293 LTFLNAKEEDVINKPIAEVLGLKDTSS-----QDLISSQKEIVITLDEGTRDEMILHASF 347

Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
            +I +   F S     +HD++E ++ +              + +  F++ VSHE+RTPLT
Sbjct: 348 SLIKRVTGFVSGSVCVLHDVTEQQKNE--------------NSQRQFVSNVSHELRTPLT 393

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           ++  + E +    +         ++     +    ++ ++NDLL +S+++ G   +  E 
Sbjct: 394 SLQAYIEALNEGAW--KDPEIAPKFLEVTQQETGRMIRMINDLLSLSRMDRGVSKMDLEF 451

Query: 662 VSLDEAVSEAISLV-------QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714
           V+L++ V+  ++         +   ++K+  I+    N    +  D   + Q+  NI++N
Sbjct: 452 VNLNDFVNHILNRFDMIVKTDKNKDHKKKYTIKRELGNQALWVEIDTDKMMQVIDNIMNN 511

Query: 715 AIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           AI ++P GG I +  T   N  VIL + D G+G+   +L K    F ++  ++     GT
Sbjct: 512 AIKYSPDGGVITVRLTQNQN-HVILSISDQGLGIPRKDLAKIFDRFYRVDKARSRAQGGT 570

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GLGL +AK +V+A+ G+ +  S+  KG+   I  P
Sbjct: 571 GLGLAIAKEIVEAHHGRIWADSSEGKGSTFYISLP 605


>gi|303248204|ref|ZP_07334468.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
 gi|302490468|gb|EFL50377.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
          Length = 820

 Score =  320 bits (820), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 90/388 (23%), Positives = 171/388 (44%), Gaps = 39/388 (10%)

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
             R +E  +    +I+   +DG+ +++ +  I   N A+  +FG   E++  +P      
Sbjct: 239 TTRDLEDSLAHTRAIINNLADGLVVLDADARITLFNPALLAMFGKKAEEVADQPAAEAFP 298

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY--SLTMHD 560
           Q   ++         +                            +L         + + D
Sbjct: 299 QAMAAMAGACPAANQATAAE--------VRLANGGTGKAVATGVRLAGEERRATIILVRD 350

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I+  K+                  K++F++ VSHE+RTPLT+++GF+++I+ +    +  
Sbjct: 351 ITVEKEV--------------DRMKTEFISTVSHELRTPLTSVLGFAKIIRRKFTDLVAP 396

Query: 621 P-------------RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
                         +  E  + I   G  + ++V+D+LDI+K+ESG+   +  PVSL E 
Sbjct: 397 ALTEATPKTWRGAQQIRENLDIIVAEGQRLTELVDDVLDIAKMESGRCEWNMAPVSLAET 456

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727
              A+  V   A  K I +      N+PRIL D   + Q+ +N+L NA+ FT  G   I+
Sbjct: 457 AGHAVRAVAGLAARKGISLENKLPANLPRILGDRDRLIQVFVNLLGNAVKFTEHGA--IV 514

Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
                   E+ + VRD+G G+   +LE+  + F Q  ++   + +GTGLGLP+ + +++ 
Sbjct: 515 VEGSVDGSEIRVAVRDSGSGIAPADLERIFEKFKQAGDTLTEKPKGTGLGLPICRQIIER 574

Query: 788 NMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
           + G+ +  S P +G++     P+   + 
Sbjct: 575 HGGRIWAESEPGQGSVFRFTLPILAEAA 602


>gi|298480341|ref|ZP_06998539.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
 gi|298273622|gb|EFI15185.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
          Length = 936

 Score =  320 bits (820), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 98/520 (18%), Positives = 192/520 (36%), Gaps = 31/520 (5%)

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIE 361
           L        +   D  E L        P    +Y   G L   N   L +    +  D+ 
Sbjct: 423 LDSTGSVQANRALDRSEKLFQNIFANIPAGVEIYDKDGYLIDLNNKDLEIFGVVNKSDVI 482

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                        + D    + ++ +R +    +        + +R N + +     +  
Sbjct: 483 GVNFFDNPNVPQNIRDRVRNEDLVDFRLN---YSFEQAGGYYETSRSNVIELYSKVSKLY 539

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA---IINREGIILSTN 478
           +          I  ++ +      ++         I +    G A   ++NR+G  +   
Sbjct: 540 DNEGNFSGYILISIDNTERIDAMNRIRDFENFFLMISDYAKVGYAKLNLLNRKGYAI--- 596

Query: 479 RAVSKLFGYPVEDILRKPFTVF--LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
           +   K  G   +  L +   V+  +          +   +     R+  +          
Sbjct: 597 KQWYKNLGEEEDIPLSEVVAVYSQMHPEDRKRFLDFYDGVR-DGKRRHFQGEMRIRRPGT 655

Query: 537 K--LLSLRIIIK-----KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
           K     +   +                  +DI+E K+ + +L  A+  AE     KS FL
Sbjct: 656 KNEWNWVSSNVMVTNYKPEENEIEIIGINYDITELKETEAELIQARDKAEMMDRLKSAFL 715

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
           A +SHEIRTPL AI+GFS+++              EY   +  +  L+L +++D+LD+SK
Sbjct: 716 ANMSHEIRTPLNAIVGFSDLLVETEELA----ERQEYIKIVRENNELLLQLISDILDLSK 771

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709
           IE+G        V ++    + +  + + A E+ + +       +  +++D   + Q+  
Sbjct: 772 IEAGTFEFTNGDVDVNLLCEDIVRSMGMKAKEE-VELVFDDHLPVCHVISDRNRIHQVIS 830

Query: 710 NILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
           N ++NA+ FT  G  I +        E+   V DTG+G+   +L    + F ++ +    
Sbjct: 831 NFVNNAMKFTSEGS-IHVGYKLKD-GELEFYVEDTGIGIEKEQLPHIFERFVKLNSFVH- 887

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
              GTGLGL + +++V+   G+  + S   KG+      P
Sbjct: 888 ---GTGLGLSICQSIVEQLGGRIGVDSEKGKGSRFWFTIP 924



 Score = 47.7 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 53/154 (34%), Gaps = 10/154 (6%)

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG-YP 488
             G+  +   +    R ++       +I      G+ I +++G ++  N    ++FG   
Sbjct: 418 IVGLFLDSTGSVQANRALDRSEKLFQNIFANIPAGVEIYDKDGYLIDLNNKDLEIFGVVN 477

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG---STKEEKLLSLRIII 545
             D++   F  F   N P  +   +     +D R        G    T    ++ L   +
Sbjct: 478 KSDVIGVNF--FDNPNVPQNIRDRVRNEDLVDFRLNYSFEQAGGYYETSRSNVIELYSKV 535

Query: 546 KKLPFSS----CYSLTMHDISEWKQEKNKLSHAK 575
            KL  +      Y L   D +E     N++   +
Sbjct: 536 SKLYDNEGNFSGYILISIDNTERIDAMNRIRDFE 569


>gi|288940490|ref|YP_003442730.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
 gi|288895862|gb|ADC61698.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
          Length = 762

 Score =  320 bits (819), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 98/450 (21%), Positives = 184/450 (40%), Gaps = 33/450 (7%)

Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450
           R    A          +  +  ++    E        + Q  +E ++   R  +  +E  
Sbjct: 36  RRAAEALYEQRRGHRPKNTAADLSIHDLES-LIEELRLHQIELELQNESLRATRNLLEQS 94

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
           + +   + +     +  ++ +G I   N++ + L   P   ++ +   +++ ++     N
Sbjct: 95  LQRYEDLYQEAPVALLTLSEDGTIREANQSAATLLDEPRSALIGRRLGLWISEDRRPAFN 154

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570
             L ++LS + R+ LE   +   +    +     + K   +    L + DISE K  + +
Sbjct: 155 TLLADVLSGECRRRLELRLVIQHRPACWVLAETTLVKPTVAREIRLALTDISERKALEEQ 214

Query: 571 LSHAKKIA------------------------EKESSHKSDFLARVSHEIRTPLTAIIGF 606
           L   + +                            ++ KS  LA +SHEIRTPL  I G 
Sbjct: 215 LRQGEALWDSEERLCSLNAELEARGAVRIAEVNAANAAKSHLLAHMSHEIRTPLNVITGL 274

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
           +E+++        N +       I  +G  +L I++D+LD+S+IE+GK+ +  +P  L +
Sbjct: 275 AELLEQGEL----NAQQQHQVRRIQEAGESLLGILDDILDLSRIEAGKLGIARQPFELHK 330

Query: 667 AVSEAISLVQLYANEKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGG-- 723
            ++   S     A  K + +            L D   ++Q+  N++ NAI FT +GG  
Sbjct: 331 LLARIESFQGRCARAKGLSLDLDIPPLPAGAFLGDPLRLEQVLNNLIGNAIKFTNTGGIT 390

Query: 724 -QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
            +I +    T    +   V DTG+G+    LE   +PF Q   +      GTGLGL ++K
Sbjct: 391 LRIQVREAETDTPYLHFEVEDTGIGIEPQILEDLFQPFVQADANLTRSRGGTGLGLAISK 450

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
            +V+   GK    S P +G+      PL  
Sbjct: 451 HLVELMGGKIGAVSQPGRGSTFWFDLPLEH 480


>gi|209967043|ref|YP_002299958.1| histidine protein kinase DivJ (or putative bacteriophytochrome)
           [Rhodospirillum centenum SW]
 gi|209960509|gb|ACJ01146.1| histidine protein kinase DivJ (or putative bacteriophytochrome)
           [Rhodospirillum centenum SW]
          Length = 894

 Score =  320 bits (819), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 124/660 (18%), Positives = 237/660 (35%), Gaps = 46/660 (6%)

Query: 161 IDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKE 220
           +  +       +    G       H  +         +R+ +    L    +  +     
Sbjct: 262 VTASLTLSVIVDGALWGLIA---CHHTQPFWLDPDRQQRICRVADALARSIRTATRRLDA 318

Query: 221 KYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINL 280
           +    + +      R+  +  S  E        L         +  +             
Sbjct: 319 QATRQAARQFARLQRVVARSRSPLEDIILSRQGLLNAIDADGVALVAGRSVLSTGAVPEA 378

Query: 281 NQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD-KCPIPFFVYSHG 339
           +   +       +            R+ P L A          + +D   P+    ++  
Sbjct: 379 DWLRQFARILADRAGEASFVSECLGRDVPDLPAPGPAASGCIAQLIDPAGPVVIAAFAGE 438

Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399
                N              +E       L              +   +           
Sbjct: 439 VGGTVN------WGGNPDKPVEWDPAKGRL-------SPRKSFELWKQQLRGHTRPWRRA 485

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459
              +  +    L +        +Q                    ++++  E      IL+
Sbjct: 486 DIRLIADVGRLLTV--------DQAGNPDGMVREIERVSRRLGGEKQVRRE------ILD 531

Query: 460 ATSDGIAII-----NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
              DGI ++     + E  + + NR    +FG   +  L      FLE            
Sbjct: 532 VLLDGIVLVASIRDDNEMKVHAVNRLFRDVFGISGDKRLPHRLETFLETFGLPPEL---- 587

Query: 515 EILSLDLRQTLEKITLGSTKEEKLL-----SLRIIIKKLPFSSCYSLTMHDISEWKQEKN 569
                     + +    S +  +       ++     +   +    + ++D++ +KQ + 
Sbjct: 588 -ADPAFTDFPMTREVWSSRRGRRWFSFDRRTVFNAQGESGGTKLALICLYDVTAYKQAEE 646

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
            L  A++ A      +  F+A  SHE+RTPL AIIGFSE+I+ Q FGP+G+ RY EYA  
Sbjct: 647 ALMAARQQAISAMEQQRKFIAAASHELRTPLNAIIGFSEMIQMQTFGPVGDTRYQEYATD 706

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I  +G  +LD++ND+L + +++ G       PV L++ + +A+ +V+  A  + I +   
Sbjct: 707 ILNAGRHLLDLINDILTLGRMQPGAAAAADAPVCLNDEIRQALRMVEDQARARSIAVVWE 766

Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749
                  +  + R+V+QI LN+LSNA+ FTP GGQ+ +       E++ L + DTG+G+ 
Sbjct: 767 EPPYRILLDMEARAVRQILLNLLSNAVKFTPPGGQVSVVLGGHDGEDLWLEISDTGIGIA 826

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             ++E   +PF +  N      EGTGLGL + +A+++A+ G+  + S   +GT + I  P
Sbjct: 827 EADMEHVFEPFFRAGNVYTRSTEGTGLGLSIVRALMEAHGGRVSLRSRYGQGTTLRITLP 886



 Score = 38.5 bits (88), Expect = 5.4,   Method: Composition-based stats.
 Identities = 23/253 (9%), Positives = 60/253 (23%), Gaps = 22/253 (8%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP---NNHIGDLLKRQNTWY 144
             D    +  ++       G    K +  RL    +   + P   +    D    +  W 
Sbjct: 544 RDDNEMKVHAVNRLFRDVFGISGDKRLPHRLETFLETFGLPPELADPAFTDFPMTREVWS 603

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIV-HVNRVDNDPRALGKRLDKK 203
                                  +++   E  G +   I  +                ++
Sbjct: 604 S---------RRGRRWFSFDRRTVFNAQGESGGTKLALICLYDVTAYKQAEEALMAARQQ 654

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
                E ++   +    +       +P   +   +++  +  +    D   +     +L 
Sbjct: 655 AISAMEQQRKFIAAASHELR-----TPLNAIIGFSEMIQMQTFGPVGDTRYQEYATDILN 709

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGT---LQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
           +    L    D  T+   Q            L +  +++   +  +      A   E   
Sbjct: 710 AGRHLLDLINDILTLGRMQPGAAAAADAPVCLNDEIRQALRMVEDQARARSIAVVWEEPP 769

Query: 321 LTPETVDKCPIPF 333
                +D      
Sbjct: 770 -YRILLDMEARAV 781


>gi|237746376|ref|ZP_04576856.1| two-component hybrid sensor kinase/response regulator [Oxalobacter
           formigenes HOxBLS]
 gi|229377727|gb|EEO27818.1| two-component hybrid sensor kinase/response regulator [Oxalobacter
           formigenes HOxBLS]
          Length = 907

 Score =  320 bits (819), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 110/600 (18%), Positives = 219/600 (36%), Gaps = 62/600 (10%)

Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
              A    ++++     + +  +S+  +             K       + +        
Sbjct: 52  PECAGDFALIESALSRAVKAGNASVEMEIRLPGKAGGFSWIKLSGTVSSDETGAPLLVAV 111

Query: 305 HRNHPSLSAYFDEGENLTPE-------TVDKCPIPFFVYSHGN--LFYANPSFLLLTKYK 355
             +  +L+A ++E   L  E        +D+     +V       L Y N +        
Sbjct: 112 LTDINALAADWEEQARLAGEHWRYFRWMMDEFAGNVYVSDMETCELLYLNRTACETLGVS 171

Query: 356 SV--------DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
           +         + I+            +L +N                    R+  I+W  
Sbjct: 172 AERVLGRKCFEVIQGRQSPCPFCTNDRLRENGFCNWEFFNPVLERAFMIRNRV--IEWEG 229

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
                        A                       +  + +  +L +++ +   G   
Sbjct: 230 RPVRLELSHDMFSA---------------------EYKLAKKDRERL-ALVGSMPGGFVR 267

Query: 468 IN-REGIILSTNRA-VSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
           ++ R+   +    A    + GY  E           ++  +    +   L  + +     
Sbjct: 268 LDARDYRTVLWYGADFLNVIGYTAEQFENELHSQCTYVHPDDLKRIVSRLETVDTTGENI 327

Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNKLSHAKKIAE 579
             E   +  + E K L++ +       S      +     D++E ++E+ +   A + A 
Sbjct: 328 VTEVRIITRSGEMKYLNMTLCYASAEDSWDGIPSFYSVGMDVTEQREEQARQRRALEEAY 387

Query: 580 KE----SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
                 S  K++FL+ +SH+IRTP+ AI+G + + +     P    R  +  + I  S  
Sbjct: 388 HAARVASEAKTNFLSSMSHDIRTPMNAIMGMALIAQTNLASP---ERVADCLDKISVSSR 444

Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN-NI 694
            +L ++N++LD+SKIESG+++L  E VSL E +   + + Q    EK +    S +    
Sbjct: 445 HLLSLINEILDMSKIESGRIDLVAEEVSLPELIRNVMGMCQPLLREKGLEFHVSASQVRH 504

Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQI-----IISTTHTSNEEVILRVRDTGVGMT 749
             I+ D   ++Q+ +N+LSNA+ +TP GG +      + T      +    V D G+GM 
Sbjct: 505 ENIVIDGGRLQQVLMNLLSNAVKYTPEGGTVGFVVRELPTGIKKRGQYEFVVEDNGIGMP 564

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
              L    +PF +  + +  R +GTGLG+ +A+ +V    G   + S P KG+   +  P
Sbjct: 565 AAFLPHLFEPFSRAEDPRISRIQGTGLGMAIAENIVRMMNGTITVESEPEKGSRFTVSLP 624


>gi|317152082|ref|YP_004120130.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316942333|gb|ADU61384.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 643

 Score =  320 bits (819), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 98/511 (19%), Positives = 203/511 (39%), Gaps = 51/511 (9%)

Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405
            + +  T  +    ++    +STL+    +S   AI  ++L       +    +      
Sbjct: 134 RAEIDFTLTREKQQLDEQMLVSTLIIVVAISVILAITGLLLRIFLNKPLHVLQQGIARVA 193

Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK--RKMEIEVMQLCSILEATSD 463
             + S     +   +  +      +   E E  + ++    + ++    +   I E   +
Sbjct: 194 KGDFSYEFGEVRHTELIEIATRFRRMSAEIEAREKKLQAMNKTLQEAEEKYRGIFENAIE 253

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF--LEQNTPSVMNHYLTEILSLDL 521
           GI     +G++   N A++++FGY   D                P  M  +  ++     
Sbjct: 254 GILQATPDGVLRRANPAMARIFGYDSLDEFLSNVRSLGSRIMVNPDRMQDFYKQVRERGE 313

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS----LTMHDISEWKQEKN-------- 569
            +  E        + K +   +  + +   S         + DI++ K+ +         
Sbjct: 314 IKRFEAEYYRR--DGKTIWGSLNARAIYSDSGEIIFIEGILEDITDRKKAEQDLADLNRH 371

Query: 570 -----------------KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI-- 610
                            +L  A +   +    KS FL+ VSHE+RTPLT+I+GF++++  
Sbjct: 372 LEQLVRERTEDLVNKARELEEANQRLRELDEMKSAFLSSVSHELRTPLTSILGFAKLLHK 431

Query: 611 ----------KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
                     +N+        R       I   G  +  ++ND+LD++KIESG M    E
Sbjct: 432 EFTRNYLPLAQNEPLLVKKGQRIQNNLLIISHEGERLTRLINDVLDLNKIESGSMGWRDE 491

Query: 661 PVSLDEAVSEAISLVQLYANEK-RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719
            +++ + V  A+  V    ++  ++ + +     +P ++AD   ++Q+ +N+L+NA  FT
Sbjct: 492 RLNMSDIVETAVQSVTGLFSQNPQVGLVSEIDPALPVVIADPDRMQQVLINLLNNAAKFT 551

Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ-QIRGEGTGLGL 778
             G  + +        +V + + DTGVG+   +  +  + F Q   +    + +GTGLGL
Sbjct: 552 DDGS-VTVR-AFPRFGQVRVEIADTGVGIHPEDQNRIFEKFHQTKTATMGDKPKGTGLGL 609

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            + + +V+   G+ ++ S P KG+      P
Sbjct: 610 TICREIVEHYSGRIWVESEPGKGSTFIFTLP 640



 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/124 (12%), Positives = 39/124 (31%), Gaps = 7/124 (5%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN---NHIGDLLKRQNTWYGKT 147
             G L+  +  + +  G  +       +  +   + ++P+   +    + +R      + 
Sbjct: 260 PDGVLRRANPAMARIFGYDSLDEFLSNVRSLGSRIMVNPDRMQDFYKQVRERGEIKRFEA 319

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
             +  +G    +   L A  IYS + E     G  I+               L++    L
Sbjct: 320 EYYRRDGKT--IWGSLNARAIYSDSGEIIFIEG--ILEDITDRKKAEQDLADLNRHLEQL 375

Query: 208 HEIK 211
              +
Sbjct: 376 VRER 379


>gi|270294120|ref|ZP_06200322.1| two-component system sensor histidine kinase/response regulator
           [Bacteroides sp. D20]
 gi|270275587|gb|EFA21447.1| two-component system sensor histidine kinase/response regulator
           [Bacteroides sp. D20]
          Length = 914

 Score =  320 bits (819), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 109/487 (22%), Positives = 184/487 (37%), Gaps = 28/487 (5%)

Query: 335 VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394
            +  G L + N  F       +  D+                D  + K            
Sbjct: 283 AHEDGTLIFCNRCFKERHGIGNGQDLTRMKIYD---LPSYGRDETSWKEFANRVKRGETN 339

Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
                 H +    E         +  +++    +   G   +      ++++++     L
Sbjct: 340 HGYIVYHPLPKRPEVLAIEGNAYWVTSDKGEGTIWTFG--RDVSTRIRHEQQIKQFNQIL 397

Query: 455 CSILEATSDGIAIINREGII--LSTNR-AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
             I+E    GI + +       L  NR + ++    P+++ L K    F    T      
Sbjct: 398 DKIIENLPAGIVVKDINNNFKYLYRNRESYNR--EIPIQEALGKDDFDFYPLETAQEKRA 455

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLR---IIIKKLPFSSCYSLTMHDISEWKQEK 568
              EI     +                + L    + I+   FS        DI+E +Q K
Sbjct: 456 QDIEIARTGKKMHWIAEE--RDGNGNPIYLDKRKMKIESNDFSPILLNIEWDITEMEQMK 513

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
            +L  AK+ AE     KS FLA +SHEIRTPL AI+GFS +I             + Y  
Sbjct: 514 RELLVAKEKAETSDRLKSAFLANMSHEIRTPLNAIVGFSRIIAE----STDEEERLGYYE 569

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            ++ +   +L ++N++LD+SKIESG +     PV L     E          E  + +  
Sbjct: 570 IVESNNERLLQLINEILDLSKIESGIVEFTITPVRLHPLCKEIHDAHIFRCPE-GVELIY 628

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-EVILRVRDTGVG 747
             ++    I  D   + Q+  N++ NA  FT +G    IS  +      V   V DTG+G
Sbjct: 629 EPSDENIVIDGDKNRIFQVISNLIGNAFKFTTTG---HISYGYRREGKYVAFHVTDTGMG 685

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           +   ++++  + F ++ N      +GTGLGL + K +++   G   + S   KGT    +
Sbjct: 686 IAPDKVDRVFERFVKVNNF----AQGTGLGLSICKTIIERLGGNISVTSEVGKGTTFTFV 741

Query: 808 FPLYDTS 814
            PL  TS
Sbjct: 742 LPLESTS 748



 Score = 48.9 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 48/167 (28%), Gaps = 19/167 (11%)

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI-----ILST 477
           Q        G E   +  +   ++ E     L    +       ++NR+GI     + + 
Sbjct: 2   QAAHGRRPEGHETNTIRMKNILKQAENAERLLKLTSDTM----LLLNRDGICMDIAVHNV 57

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
           N     L+    E +L K     +  +T   +     ++L+  +R               
Sbjct: 58  N-----LWFMKEEKLLGKNLFQLIPPSTYYQVYPEFKKVLTQKVRSVHNYEMTL-----G 107

Query: 538 LLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
             +        P+         DI+E  Q K +L        +    
Sbjct: 108 HTTYYFKCIMYPYDGMVLCQYRDITERSQRKLELEKKNHELNEIQKA 154



 Score = 45.0 bits (105), Expect = 0.049,   Method: Composition-based stats.
 Identities = 27/284 (9%), Positives = 75/284 (26%), Gaps = 15/284 (5%)

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDI 360
           +Y             ++  +   E      I  + Y      +    +   T     +++
Sbjct: 127 QYRDITERSQRKLELEKKNHELNEIQKAALIGNWQYDTQTRIFC---YAGHTGIMCSEEV 183

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
           +     + L         +    +      +   +   R+        N   +    F +
Sbjct: 184 QHINMDNYLELILPEDRKSFTGWMKENLKGKMENSVDYRIFLK----GNIFYIRLKAFAR 239

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
             Q   N+   G      D +  +  +      L   +  +++ I   + +G ++  NR 
Sbjct: 240 ERQKDGNVTIEGYIQNITDIQKRRNDI----NLLTHAINNSTEDIYSAHEDGTLIFCNRC 295

Query: 481 VSKLFGY-PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
             +  G    +D+ R                      +          +     K  ++L
Sbjct: 296 FKERHGIGNGQDLTRMKIYDLPSYGRDETSWKEFANRVKRGETNHGYIVYHPLPKRPEVL 355

Query: 540 SLRIIIKKLPFSSC---YSLTMHDISEWKQEKNKLSHAKKIAEK 580
           ++      +              D+S   + + ++    +I +K
Sbjct: 356 AIEGNAYWVTSDKGEGTIWTFGRDVSTRIRHEQQIKQFNQILDK 399


>gi|324327074|gb|ADY22334.1| sporulation kinase [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 801

 Score =  320 bits (819), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 101/532 (18%), Positives = 211/532 (39%), Gaps = 47/532 (8%)

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVD-----KCPIPFFVYSHGNLFYANPSFLLL 351
            +  E +      +     +   + T E ++                G++  AN ++  +
Sbjct: 294 GQVIEVVGSTVDITERKKVESELSATKELLESFIKHNLDAITISDREGHILQANKAYEKI 353

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ-WNRENS 410
             + S + I            P + D    + +   +   T  +   RL T++  +  + 
Sbjct: 354 FGWSSQEIIGKRL--------PCVPDFLMEESLENIQKILTGESVVTRLETVRQRSDGSL 405

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK-------MEIEVMQLCSILEATSD 463
           L ++       +     +  + I  +  + +  +R+       +    M+  +++E  +D
Sbjct: 406 LDISLTVSPILDVRGNVIALSAICRDISERKQAERERHRLHQQLRDSEMKYRALIEQATD 465

Query: 464 GIAI--INREG---IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
            + +  +N +      +  N    + FGY  E++L   F+  + Q++  ++   L +I  
Sbjct: 466 AVYVVELNEDNAPSRFIEVNPVGCRRFGYSREELLSLSFSNIVPQDSQMIVK-LLEKIKK 524

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578
                TL+   +  T +       + +  L     +     DI+E  + +  L  ++K+A
Sbjct: 525 GQTSFTLQDEYVFPTGKVITTEFSVRVFNLNGKKVFLSISRDITERLKTEELLRKSEKLA 584

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
                        ++HEI  PLTA+ GF +++K+       N     Y N +      + 
Sbjct: 585 VV-----GQLATVMAHEINNPLTAMKGFMQLLKSTE-----NENNQGYINIVSSEIERIE 634

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
            I  + + ++K +  KM  +    ++   + + + L+Q  A    I  R      IP I 
Sbjct: 635 SITTEFMAVAKPQVVKMQPN----NISVLMDQVLMLLQPQAMMHNIKFRIDLNPGIPLIS 690

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
            +   +KQ+ +NIL NAI   P GG+I+I      N ++ +R  D G G+    +    +
Sbjct: 691 CEGNQLKQVFVNILKNAIESMPMGGEILIQLNILDNNQLSIRFIDQGCGIPKERIPYLGE 750

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           PF        I+ EG GLGL +   +++ + GK +I S    GT++E+  P+
Sbjct: 751 PFY------SIKEEGIGLGLMICYKIIETHQGKIFIESEMNTGTIVEVTLPI 796



 Score =  107 bits (268), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 44/286 (15%), Positives = 91/286 (31%), Gaps = 21/286 (7%)

Query: 313 AYFDEGENLTPETVDKCPIPFF----VYSHGNLFYANPSFLLLTKYKSVDDIEI-AGGLS 367
               + +    +TV +     F    V  H      +  F     + S   +      + 
Sbjct: 186 RELKKSKQELTDTVHELQGGIFKFKKVGKHFIHTLCDGQFYYQNGFYSEQVVGKSLRTID 245

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
             +  P L          L   +   I        + W  + ++ +         +  + 
Sbjct: 246 ASIIPPHLVPQLMKY--YLQAWEGKEIIFE-----LPWPNDKTIILI--ALRPIKRNGQV 296

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
           +   G   +  + +  + ++      L S ++   D I I +REG IL  N+A  K+FG+
Sbjct: 297 IEVVGSTVDITERKKVESELSATKELLESFIKHNLDAITISDREGHILQANKAYEKIFGW 356

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
             ++I+ K     +           + +IL           T+    +  LL + + +  
Sbjct: 357 SSQEIIGKRL-PCVPDFLMEESLENIQKIL-TGESVVTRLETVRQRSDGSLLDISLTVSP 414

Query: 548 LPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
           +               DISE KQ + +     +   ++S  K   L
Sbjct: 415 ILDVRGNVIALSAICRDISERKQAERERHRLHQQL-RDSEMKYRAL 459



 Score = 60.0 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 47/150 (31%), Gaps = 5/150 (3%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG-KTT 148
           D  G++ + ++   K  G  + ++IG RL  V D L  +   +I  +L  ++     +T 
Sbjct: 338 DREGHILQANKAYEKIFGWSSQEIIGKRLPCVPDFLMEESLENIQKILTGESVVTRLETV 397

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +G+ L + + ++  PI              I               RL ++     
Sbjct: 398 RQRSDGSLLDISLTVS--PILDVRGNVIALS--AICRDISERKQAERERHRLHQQLRDSE 453

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKN 238
              +       +   +          R   
Sbjct: 454 MKYRALIEQATDAVYVVELNEDNAPSRFIE 483


>gi|293373605|ref|ZP_06619953.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f]
 gi|294809416|ref|ZP_06768121.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b]
 gi|292631430|gb|EFF50060.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f]
 gi|294443352|gb|EFG12114.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b]
          Length = 936

 Score =  320 bits (819), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 98/520 (18%), Positives = 192/520 (36%), Gaps = 31/520 (5%)

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIE 361
           L        +   D  E L        P    +Y   G L   N   L +    +  D+ 
Sbjct: 423 LDSTGSVQANRALDRSEKLFQNIFANIPAGVEIYDKDGYLIDLNNKDLEIFGVVNKSDVI 482

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                        + D    + ++ +R +    +        + +R N + +     +  
Sbjct: 483 GVNFFDNPNVPQNIRDRVRNEDLVDFRLN---YSFEQAGGYYETSRSNVIELYSKVSKLY 539

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA---IINREGIILSTN 478
           +          I  ++ +      ++         I +    G A   ++NR+G  +   
Sbjct: 540 DNEGNFSGYILISIDNTERIDAMNRIRDFENFFLMISDYAKVGYAKLNLLNRKGYAI--- 596

Query: 479 RAVSKLFGYPVEDILRKPFTVF--LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
           +   K  G   +  L +   V+  +          +   +     R+  +          
Sbjct: 597 KQWYKNLGEEEDIPLSEVVAVYSQMHPEDRKRFLDFYDGVR-DGKRRHFQGEMRIRRPGT 655

Query: 537 K--LLSLRIIIK-----KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
           K     +   +                  +DI+E K+ + +L  A+  AE     KS FL
Sbjct: 656 KNEWNWVSSNVMVTNYKPEENEIEIIGINYDITELKETEAELIQARDKAEMMDRLKSAFL 715

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
           A +SHEIRTPL AI+GFS+++              EY   +  +  L+L +++D+LD+SK
Sbjct: 716 ANMSHEIRTPLNAIVGFSDLLVETEELA----ERQEYIKIVRENNELLLQLISDILDLSK 771

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709
           IE+G        V ++    + +  + + A E+ + +       +  +++D   + Q+  
Sbjct: 772 IEAGTFEFTNGDVDVNLLCEDIVRSMGMKAKEE-VELVFDDHLPVCHVISDRNRIHQVIS 830

Query: 710 NILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
           N ++NA+ FT  G  I +        E+   V DTG+G+   +L    + F ++ +    
Sbjct: 831 NFVNNAMKFTSEGS-IHVGYKLKD-GELEFYVEDTGIGIEKEQLPHIFERFVKLNSFVH- 887

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
              GTGLGL + +++V+   G+  + S   KG+      P
Sbjct: 888 ---GTGLGLSICQSIVEQLGGRIGVDSEKGKGSRFWFTIP 924



 Score = 47.7 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 53/154 (34%), Gaps = 10/154 (6%)

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG-YP 488
             G+  +   +    R ++       +I      G+ I +++G ++  N    ++FG   
Sbjct: 418 IVGLFLDSTGSVQANRALDRSEKLFQNIFANIPAGVEIYDKDGYLIDLNNKDLEIFGVVN 477

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG---STKEEKLLSLRIII 545
             D++   F  F   N P  +   +     +D R        G    T    ++ L   +
Sbjct: 478 KSDVIGVNF--FDNPNVPQNIRDRVRNEDLVDFRLNYSFEQAGGYYETSRSNVIELYSKV 535

Query: 546 KKLPFSS----CYSLTMHDISEWKQEKNKLSHAK 575
            KL  +      Y L   D +E     N++   +
Sbjct: 536 SKLYDNEGNFSGYILISIDNTERIDAMNRIRDFE 569


>gi|192362033|ref|YP_001983813.1| two-component hybrid sensor and regulator [Cellvibrio japonicus
            Ueda107]
 gi|190688198|gb|ACE85876.1| two-component hybrid sensor and regulator [Cellvibrio japonicus
            Ueda107]
          Length = 1321

 Score =  320 bits (819), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 113/699 (16%), Positives = 216/699 (30%), Gaps = 70/699 (10%)

Query: 145  GKTTLWPIEGTNLYVPIDLAALPIYSRNREFS------GFRGFGIVHVNRVDNDPRALGK 198
             +    P   ++  +   L+    Y             G     I    R +  P     
Sbjct: 512  NEIASLPATESDELLTQALSLAVRYLGVGTGVVSEVNAGRYQVRICFSMRDEWLPADKEL 571

Query: 199  RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
             L + ++ L    +   + +     + +      H   ++ + +           L    
Sbjct: 572  PLGQTYAGLVISARDVVAEDDIPGSVLADHPAYRHSADESYIGAPLWVQGQLYGTLCFSS 631

Query: 259  YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
                + +       +DF  +     +        +   K   +     +       +   
Sbjct: 632  --RKSRQHEYDRLDKDFVRLLGRWVSSVVERWHQEREKKTILDRFQKLSQRVPGFLYQYQ 689

Query: 319  ENLTPETV--DKCPIPFFVYSHGNLFYANPSFLLLTKY--KSVDDIEIAGGLSTLLDAPK 374
                  T      P  + VY          +  +L     + +D I  +   S L   P 
Sbjct: 690  LRPDGSTFFPYASPGIYAVYGVHPQDVGEDAACMLDVLYPEDLDWIRESISWSALHLTPW 749

Query: 375  LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
            ++       V +   +R  I    +    +    + L                   NG  
Sbjct: 750  VA------TVRVNHPERGLIWTHVQSVPERLPDGSVLW------------------NGYV 785

Query: 435  PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
             +    +  + ++        +I +A +  I   +  G+I + NR    L GY   +++ 
Sbjct: 786  SDITPLKQTELELAQTNALNQAIFDAATVSIIATDVNGMIKTFNRGAEVLLGYNAVEMID 845

Query: 495  KPFTVFLEQNTPSVMNHYLTE--------------ILSLDLRQTLEKITLGSTKEEKLLS 540
            K     +             +              +         E        +   + 
Sbjct: 846  KRTPEIIHDPDEMAARAQQLKRELGQDIQAGFEVLVARARAGWDDESEWTYIRYDGSRIP 905

Query: 541  LRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
            + + I  L         Y     DISE K+                  K++F++ VSHE+
Sbjct: 906  VLLAISALRDLEGNIFGYLGIAQDISESKRV--------------DKMKAEFISTVSHEL 951

Query: 597  RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
            RTPLTAI G   ++     G L              +   ++ +VNDLLD+ K+ +GKM 
Sbjct: 952  RTPLTAISGALGILTAGGAGTLPEAATR-MLQIAHNNALRLIHLVNDLLDMEKLVAGKMQ 1010

Query: 657  LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716
                  SL   V +++     YA +  +       ++   +  D   ++Q+  N LSNA 
Sbjct: 1011 FEIHMQSLLPIVRQSLETNASYAAQFHVHYVLDPDSDDAMVSVDSLRLEQVLANYLSNAA 1070

Query: 717  HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
             F+P  GQ+ ++        V + V D G G+      +    F Q  +S   +  GTGL
Sbjct: 1071 KFSPPNGQVWVNIRRRM-GSVRVTVTDHGRGIPEAFRARIFHKFSQADSSDSRQKGGTGL 1129

Query: 777  GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            GL + K +++   GK    S   +G       P  D++ 
Sbjct: 1130 GLAICKELIERMGGKVGFDSAEGQGASFYFELPCEDSAQ 1168



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 46/423 (10%), Positives = 97/423 (22%), Gaps = 26/423 (6%)

Query: 182 GIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS 241
           G                    +    H + + +             Q P    R  + ++
Sbjct: 96  GTAERTAQQRQRLERYLASYWENVRGHGVIQLNVFFNPAAVGFLRMQRPQ---RYGDSLA 152

Query: 242 SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301
            L                  L+ E S             +Q +         ++  + + 
Sbjct: 153 GLRPQLTQVFATGMPVWGMDLSREGSGYSALVPIFADTEHQGSVIAVLEVTLDSLPDFYR 212

Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN----------LFYANPSFLLL 351
             S      L     E   L  ET  K      +  +            + + N S + +
Sbjct: 213 DDSLNMAIFLRKSATE-PLLWAETQRKLNSLSHITLNDWRLESYSRPMVIEWWNQSLIPI 271

Query: 352 -TKYKSVDDIEIAGGL---STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
               + +   +    L     LL   + S       V    S        A    I    
Sbjct: 272 QYNLRVLSASDGRMFLLSWWPLLQGEQGSGPVIAAAVWTDISQP-YSDYLADGRRILAKW 330

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
             +L    +      Q      +  +     + +      E     L   L ++  G   
Sbjct: 331 LLALLAAELLLITFIQLNRQRMRQLMAEHSAELQKEIAASEQSRQHLALALRSSDSGFWE 390

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL--DLRQTL 525
            +      S +    +L G P ++        +L +  P+      +E+L          
Sbjct: 391 WDIVHERASFSPEWRRLCGLPPDETGSFELDEWLGRVHPADKRASYSEMLRHIKGETPMY 450

Query: 526 EKITLGSTKEEKLLSLR-----IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
           E        +     +      +       +S       DI++ K  +      +     
Sbjct: 451 ESEYRLRVADGSYKWILSRGKVVEWSANGSASLMLGVYSDITQRKNMELIAIRQQAALHA 510

Query: 581 ESS 583
            + 
Sbjct: 511 LNE 513



 Score = 47.3 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 36/339 (10%), Positives = 77/339 (22%), Gaps = 29/339 (8%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR--------- 139
             D +G +K  +      +G  A +MI  R  ++      D        LKR         
Sbjct: 819  TDVNGMIKTFNRGAEVLLGYNAVEMIDKRTPEIIH--DPDEMAARAQQLKRELGQDIQAG 876

Query: 140  --------QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN 191
                    +  W  ++    I      +P+ LA   +        G+ G  I        
Sbjct: 877  FEVLVARARAGWDDESEWTYIRYDGSRIPVLLAISALRDLEGNIFGYLG--IAQDISESK 934

Query: 192  DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD 251
                +        SH         S            +      +    + + +   +  
Sbjct: 935  RVDKMKAEFISTVSHELRTPLTAISGA------LGILTAGGAGTLPEAATRMLQIAHNNA 988

Query: 252  DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
              L      LL  E+    + +    +       +Q   T  + + +   +         
Sbjct: 989  LRLIHLVNDLLDMEKLVAGKMQFEIHMQSLLPIVRQSLETNASYAAQFHVHYVLDPDSDD 1048

Query: 312  SAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
            +    +   L     +               + N           V   +   G+     
Sbjct: 1049 AMVSVDSLRLEQVLANYLSNAAKFSPPNGQVWVNIR--RRMGSVRVTVTDHGRGIPEAFR 1106

Query: 372  APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
            A      +        +   T +  +     I+      
Sbjct: 1107 ARIFHKFSQADSSDSRQKGGTGLGLAICKELIERMGGKV 1145


>gi|330936909|gb|EGH41034.1| PAS protein [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 975

 Score =  320 bits (819), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 131/753 (17%), Positives = 264/753 (35%), Gaps = 52/753 (6%)

Query: 75  VFDPIPRTVRFTW--NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH 132
            F+     V F++    D    L  I+  L     + + +++G         L  D    
Sbjct: 217 KFESRLPPVGFSFAVRGDEQRLLTFINRALDSIAPSTSREVLGR-WTM---GLGADVEGQ 272

Query: 133 IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALP--IYSRNREFSGFRGFGIVHVNRVD 190
              L   +  W     L     T       +   P     +N  + G     +  ++R+ 
Sbjct: 273 RIRLTSAERRW----LLKHPSVTIA----TVHHPPYIYKDKNGHWVGLNADVLSRISRM- 323

Query: 191 NDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK 250
              + + + L      +  ++ G + +     +   ++     L         +  +  +
Sbjct: 324 TGLQFVHQELPSTQLSIDMLRAGQADMNTTLAENTERRR---FLDFTYSFGGNSWMFVVR 380

Query: 251 DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310
            D         LT +  +LP +                   L++  +     +  R   +
Sbjct: 381 SDRSSHISLDSLTGKVLALPARH-----------------ALEDLIRREHPLIQLRLVDT 423

Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
                   E+   +   +  +  +++  G L  A  S            I+    L  +L
Sbjct: 424 YDQARALVESGAADATIQNEVGAYLFPSGQLKVA-RSVEGQWSPDRFSVIKTQPELLGIL 482

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
           +        A    +  +   + +          W R        +              
Sbjct: 483 NKALEEFPVAELRSIRLKWLGSALP-----QPSLWGRIPPWVFWVVSLALLIGLVSLTWS 537

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490
           + ++ +    +  +R++  ++    ++ +   + I + + +G ++S NR+  +  G   E
Sbjct: 538 SRLKVQIRQRQRVQRQLNDQLAFKHALFDGIPNPIYVRDLKGRLISCNRSYEQSLGISFE 597

Query: 491 DILRKPFT--VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            +  +  T    + +     M+     +L        ++      K   +    +     
Sbjct: 598 QMNGRRLTDVNLIPRALAEQMHTDYLTLLENHQPVFSDRTIELPGKRMDVWQWTVPFFAA 657

Query: 549 PFS-SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
                       DI+E KQ + +L  A  +A++ +  KS FLA +SHEIRTP+ AIIG  
Sbjct: 658 DGQLQGLLGGWIDITERKQLEQQLQEAMHLADQANEAKSAFLASMSHEIRTPMGAIIGLL 717

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
           E+   Q       P          RS   ++ ++ + LD+++IE+G M L     SL E 
Sbjct: 718 ELECEQALRLGKIPSQG--LQVAHRSATELIALIGESLDLARIEAGGMQLSLAVTSLQEL 775

Query: 668 VSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQII 726
               I L    A EK + +R  F+         D   ++Q+  N+L NA+ FT  G  ++
Sbjct: 776 FDGVIELFSAQAGEKGVELRLEFSGQARGDYWLDPFRLRQVLHNVLGNALKFTRQGAVVV 835

Query: 727 ---ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
              ++     +  V + ++D+G G+     ++  +PF Q  +       G+GLGL + + 
Sbjct: 836 TLDVTHDSPESTRVRIGIQDSGEGIDPQRQQQVFQPFTQASDDTAAHYGGSGLGLSITRQ 895

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           +V+   G   + S P KGTL+ I  PL   S P
Sbjct: 896 LVELMKGDISLHSEPGKGTLVTIDLPLTRVSEP 928


>gi|186685940|ref|YP_001869136.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186468392|gb|ACC84193.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 1575

 Score =  320 bits (819), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 112/805 (13%), Positives = 260/805 (32%), Gaps = 100/805 (12%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID-PNNHIGDLLKRQNTWYGKT 147
            +D +  +   ++   +        + G     +   L            ++       + 
Sbjct: 546  VDENNRVVSYNQRFCQLWQIPERFVSGNNRRLLELALEKLEQPQEFLAKVEYLYAHPDQI 605

Query: 148  TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
            +   I   +       +A  + S   ++ G   +                +R ++K+ ++
Sbjct: 606  SRDEIRLKDGRTLDRYSAS-VRSLTEDYYGRIWY--FRDITDRKQSEEALRRSEQKYRNI 662

Query: 208  HEIKKGHSSVEKEKYDIF-----SQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
             E  +   +  + +  +F      Q     +    + +        + +   + +    +
Sbjct: 663  FENFQVGIARIRLEDGLFLEANQRQAEILGYSCATDLIGKQFTTEFYANPNDRQQLLAEM 722

Query: 263  TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
              +      +      + +             +           +   +     + E   
Sbjct: 723  AQQGEVRNFELQLCRRDKSLGWGLISLRRNAQDGCIDAVITDISDRKLVEESLRQSEARF 782

Query: 323  PETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIE-IAGGLSTLLDAPKLSDNNAI 381
                +   I   +  +G     N +   L  Y   + ++      S        +  +  
Sbjct: 783  RALYESTSIAVMLQENGIPLDCNRAAEELFGYSRQEFLQKHPSEFSPPFQPNGQTSASLA 842

Query: 382  KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
            +  +    ++                  +     +      +  E     G+  +  + +
Sbjct: 843  REQVAIAYEQGRHRFEWVHRRADGTDFPAEVWLTV-----FKLGERKLIQGLVQDLTERK 897

Query: 442  INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP---FT 498
              +  +     Q+  +L + S      + +  I  T +A+++  G     I         
Sbjct: 898  QVEATLW-HRAQVDRLLNSISRQFIDQDADTAINFTLQAIAEFMGAECSCIFEYHEPQQQ 956

Query: 499  VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE---------------------K 537
              +     +  +       S  L     +I  G+  +                      +
Sbjct: 957  FHIAHEWYNPSSILNNTTSSEPLPWFYNQILNGNPIQGLQASRIANILPEANVETELTYR 1016

Query: 538  LLSLRIIIKKLPFSSCYSLTMHDIS--------------------------EWKQEKNKL 571
             +   ++   + ++      +   +                             + +  L
Sbjct: 1017 EIIKSVVAVPMIYAGRVVGLLELDTVNKSKTWNQEEINLLQLVSELIAIGRSRHKAEEAL 1076

Query: 572  SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
              AK+ AE  +  KS FLA +SHE+RTPL AI+GF+++++        N R  +    I+
Sbjct: 1077 RIAKETAETANRSKSAFLANMSHELRTPLNAILGFAQLMERD---TTLNKRQRDSLATIN 1133

Query: 632  RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
            RSG  +L+++ND+L++SKIE+G++ L+     L   + E   + Q+ A +K++ +    A
Sbjct: 1134 RSGEHLLNLINDVLEMSKIEAGRIVLNPTSFDLHRLLQEMQQMFQVRAKDKKLSLSFELA 1193

Query: 692  NNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEE------------- 736
             N+ + IL D   ++Q+ +N+L NAI FT +GG  + +S                     
Sbjct: 1194 PNLHQYILTDESKLRQVLINLLGNAIKFTNTGGVTLRVSLGIGEQGSRGEVALSLSPLPL 1253

Query: 737  ---------------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
                           +  ++ DTG+G+   EL+   +PF Q  +++Q   EGTGLGL ++
Sbjct: 1254 CPSAPLPLVPNSQSLISFKIEDTGLGIPTEELDNLFQPFVQTASARQ-VMEGTGLGLTIS 1312

Query: 782  KAMVDANMGKFYIFSTPAKGTLIEI 806
            +  V    G   + S    G+    
Sbjct: 1313 RQFVQLMGGDIRVHSVVGSGSTFYF 1337



 Score =  142 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 67/504 (13%), Positives = 142/504 (28%), Gaps = 28/504 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147
           ID  G +  IS  L K  G    ++ G+   D      +    + +  ++        + 
Sbjct: 297 IDLEGRISYISPNLAKLTGYETTELEGIPFADFIHPDDLPSCLDAVNRVVTTGERLEIEY 356

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                +G+  +             N          +  V            + ++KF +L
Sbjct: 357 RARLKDGS--WQWQASNLATTNDLNGNLV---LISVARVITERKQAEQALLKSEQKFRNL 411

Query: 208 HE-IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL-------TEYYAHKDDVLKTEKY 259
            E  + G      +   I         L   + V+ L       T++YA+  D  +    
Sbjct: 412 FENSQFGILRSRIDDGLILDANQRLAELLGYSCVADLIGGTKFTTDFYANPSDRQRIITE 471

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
             L  + S    +  F+  N   +           ++          +   + A      
Sbjct: 472 --LREKGSLKNFELQFYQCNGKAHWGLFSLRLNVEDNCLEAVVADINDRKQVEADLHRSN 529

Query: 320 NLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
            +     +       V      +   N  F  L +            L  L         
Sbjct: 530 AILKAQQEASIDGILVVDENNRVVSYNQRFCQLWQIPERFVSGNNRRLLELALEKLEQPQ 589

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
             +  V    +    I+       I+     +  +        +   +   +     +  
Sbjct: 590 EFLAKVEYLYAHPDQISRD----EIRLKDGRT--LDRYSASVRSLTEDYYGRIWYFRDIT 643

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYP-VEDILRKP 496
           D + ++  +     +  +I E    GIA I   +G+ L  N+  +++ GY    D++ K 
Sbjct: 644 DRKQSEEALRRSEQKYRNIFENFQVGIARIRLEDGLFLEANQRQAEILGYSCATDLIGKQ 703

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556
           FT     N        L E+      +          +++ L    I +++     C   
Sbjct: 704 FTTEFYANPNDR-QQLLAEMAQQG--EVRNFELQLCRRDKSLGWGLISLRRNAQDGCIDA 760

Query: 557 TMHDISEWKQEKNKLSHAKKIAEK 580
            + DIS+ K  +  L  ++     
Sbjct: 761 VITDISDRKLVEESLRQSEARFRA 784



 Score =  137 bits (344), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 62/522 (11%), Positives = 146/522 (27%), Gaps = 43/522 (8%)

Query: 88  NIDAHGYLKEISEELPKTIGNY-AFKMIGMRLCDVSDILHIDPNNH---IGDLLKRQNTW 143
            ID  G + + ++ L + +G      +IG      +   + +P++    I +L ++ +  
Sbjct: 423 RID-DGLILDANQRLAELLGYSCVADLIGGT--KFTTDFYANPSDRQRIITELREKGSLK 479

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +   +   G   +    L                   +V          A   R +  
Sbjct: 480 NFELQFYQCNGKAHWGLFSLRL--------NVEDNCLEAVVADINDRKQVEADLHRSNAI 531

Query: 204 FSHLHEIKKGHSSVEKEKYDIFS--------QQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255
                E       V  E   + S         Q P   +   N+          +     
Sbjct: 532 LKAQQEASIDGILVVDENNRVVSYNQRFCQLWQIPERFVSGNNRRLLELALEKLEQPQEF 591

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL-QNNSKESFEYLSHRNHPSLSAY 314
             K   L +    +   E                 +L ++     + +    +       
Sbjct: 592 LAKVEYLYAHPDQISRDEIRLKDGRTLDRYSASVRSLTEDYYGRIWYFRDITDRKQSEEA 651

Query: 315 FDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
               E       +   +         G    AN     +  Y    D+      +     
Sbjct: 652 LRRSEQKYRNIFENFQVGIARIRLEDGLFLEANQRQAEILGYSCATDLIGKQFTTEFYAN 711

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
           P     +  + +              +L     +                +  ++   + 
Sbjct: 712 PN----DRQQLLAEMAQQGEVRNFELQLCRRDKSLG-------WGLISLRRNAQDGCIDA 760

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
           +  +  D ++ +  +     +  ++ E+TS  + ++   GI L  NRA  +LFGY  ++ 
Sbjct: 761 VITDISDRKLVEESLRQSEARFRALYESTSIAV-MLQENGIPLDCNRAAEELFGYSRQEF 819

Query: 493 LRKP---FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS--LRIIIKK 547
           L+K    F+   + N  +  +    ++     +       +    +       + + + K
Sbjct: 820 LQKHPSEFSPPFQPNGQTSASLAREQVAIAYEQGRHRFEWVHRRADGTDFPAEVWLTVFK 879

Query: 548 LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
           L         + D++E KQ +  L H  ++    +S    F+
Sbjct: 880 LGERKLIQGLVQDLTERKQVEATLWHRAQVDRLLNSISRQFI 921



 Score =  116 bits (290), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 42/411 (10%), Positives = 108/411 (26%), Gaps = 28/411 (6%)

Query: 184 VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS----PPPHLRMKNK 239
                            + KF  + E      S+   +  I            +   + +
Sbjct: 263 FRDITARQQVEKALSESEIKFRRIVENSNDIISLIDLEGRISYISPNLAKLTGYETTELE 322

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE- 298
                ++    D     +    + +    L  +      + +   +     T  + +   
Sbjct: 323 GIPFADFIHPDDLPSCLDAVNRVVTTGERLEIEYRARLKDGSWQWQASNLATTNDLNGNL 382

Query: 299 --SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY--SHGNLFYANPSFLLLTKY 354
                               + E       +             G +  AN     L  Y
Sbjct: 383 VLISVARVITERKQAEQALLKSEQKFRNLFENSQFGILRSRIDDGLILDANQRLAELLGY 442

Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
             V D+      +T       + ++  + +   R   +       L   Q N +    + 
Sbjct: 443 SCVADLIGGTKFTTDF---YANPSDRQRIITELREKGSLKNFE--LQFYQCNGKAHWGLF 497

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII 474
            +     +   E +       +  D +  +  +      L +  EA+ DGI +++    +
Sbjct: 498 SLRLNVEDNCLEAV-----VADINDRKQVEADLHRSNAILKAQQEASIDGILVVDENNRV 552

Query: 475 LSTNRAVSKLFGYPVEDILRKP----FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530
           +S N+   +L+  P   +             +   P      +  + +   + + ++I  
Sbjct: 553 VSYNQRFCQLWQIPERFVSGNNRRLLELALEKLEQPQEFLAKVEYLYAHPDQISRDEI-- 610

Query: 531 GSTKEEKLLSLRIIIKK--LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579
              K+ + L       +              DI++ KQ +  L  +++   
Sbjct: 611 -RLKDGRTLDRYSASVRSLTEDYYGRIWYFRDITDRKQSEEALRRSEQKYR 660



 Score =  107 bits (268), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 38/271 (14%), Positives = 84/271 (30%), Gaps = 11/271 (4%)

Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
                 E  +L   TV+       V +   N+   N  FL +        +         
Sbjct: 144 AQQKQAETLSLLQATVESTADGIIVVNQDFNVAVFNQKFLQMWSIPESLLLPSQNNERFK 203

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
             + +  D  A   +   +              I+            P     Q  + + 
Sbjct: 204 FMSEQTRDPEA--FIARVKELFYKFPEQEAFDLIEMKDGRVFERYSQPQW---QGNKIIG 258

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
           +     +    +  ++ +    ++   I+E ++D I++I+ EG I   +  ++KL GY  
Sbjct: 259 RVWSFRDITARQQVEKALSESEIKFRRIVENSNDIISLIDLEGRISYISPNLAKLTGYET 318

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
            ++   PF  F+  +        +  +++   R  LE       K+         +    
Sbjct: 319 TELEGIPFADFIHPDDLPSCLDAVNRVVTTGER--LEIEYRARLKDGSWQWQASNLATTN 376

Query: 550 FSSC---YSLTMHDISEWKQEKNKLSHAKKI 577
             +           I+E KQ +  L  +++ 
Sbjct: 377 DLNGNLVLISVARVITERKQAEQALLKSEQK 407



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 90/291 (30%), Gaps = 16/291 (5%)

Query: 314 YFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                       +        +  S G + + N +F  L     +  +     LS LL  
Sbjct: 11  QLRAILGKMEVALGAIADAIVWTGSDGKIQWCNTAFDKLVNRSHILVLNAK--LSDLLFL 68

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
               +  A +     R                 + ++   +  I          +     
Sbjct: 69  SLAGEEVAPESYPNMRVLGGE--YEITEEYECRDGKHRSLILEISGNCVQLTGGDRSSIL 126

Query: 433 IEPEDVDTR-------INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
           +  +    +       + ++K    +  L + +E+T+DGI ++N++  +   N+   +++
Sbjct: 127 VIRDVTQAKHWEREGYLAQQKQAETLSLLQATVESTADGIIVVNQDFNVAVFNQKFLQMW 186

Query: 486 GYPVEDIL--RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLR 542
             P   +L  +                 ++  +  L  +   ++   L   K+ ++    
Sbjct: 187 SIPESLLLPSQNNERFKFMSEQTRDPEAFIARVKELFYKFPEQEAFDLIEMKDGRVFERY 246

Query: 543 IIIKKLPFS-SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
              +           +  DI+  +Q +  LS ++    +   + +D ++ +
Sbjct: 247 SQPQWQGNKIIGRVWSFRDITARQQVEKALSESEIKFRRIVENSNDIISLI 297


>gi|229156703|ref|ZP_04284790.1| hypothetical protein bcere0010_28880 [Bacillus cereus ATCC 4342]
 gi|228626623|gb|EEK83363.1| hypothetical protein bcere0010_28880 [Bacillus cereus ATCC 4342]
          Length = 801

 Score =  320 bits (819), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 101/532 (18%), Positives = 210/532 (39%), Gaps = 47/532 (8%)

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVD-----KCPIPFFVYSHGNLFYANPSFLLL 351
            +  E +      +     +   + T E ++                G++  AN ++  +
Sbjct: 294 GQVIEVVGSTVDITERKKVESELSATKELLESFIKHNLDAITISDREGHILQANKAYEKI 353

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ-WNRENS 410
             + S + I            P + D    + +   +   T  +   RL T++  +  + 
Sbjct: 354 FGWSSQEIIGKRL--------PCVPDFLMEESLENIQKILTGESVVTRLETVRQRSDGSL 405

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK-------MEIEVMQLCSILEATSD 463
           L ++       +     +  + I  +  + +  +R+       +    M+  +++E  +D
Sbjct: 406 LDISLTVSPILDVRGNVIALSAICRDISERKQAERERHRLHQQLRDSEMKYRALIEQATD 465

Query: 464 GIAI--INREG---IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
            + +  +N +      +  N    + FGY  E++L   F   + Q++  ++   L +I  
Sbjct: 466 AVYVVELNEDNVPSRFIEVNPVGCRRFGYSREELLSLSFLNIVPQDSQIIVR-LLEKIKK 524

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578
                TL+   +  T +       + +  L     +     DI+E  + +  L  ++K+A
Sbjct: 525 GQTSFTLQDEYVFPTGKVITTEFSVRVFNLNGKKVFLSISRDITERLKTEELLRKSEKLA 584

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
                        ++HEI  PLTA+ GF +++K+       N     Y N +      + 
Sbjct: 585 VV-----GQLATAMAHEINNPLTAMKGFMQLLKSTE-----NENNQGYINIVSSEIERIE 634

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
            I  + + ++K +  KM  +    ++   + + + L+Q  A    I  R      IP I 
Sbjct: 635 SITTEFMAVAKPQVVKMQPN----NISVLMDQVLMLLQPQAMMHNIKFRIDLNPGIPLIS 690

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
            +   +KQ+ +NIL NAI   P GG+I+I      N ++ +R  D G G+    +    +
Sbjct: 691 CEGNQLKQVFVNILKNAIESMPMGGEILIQLNILDNNQLSIRFIDQGCGIPKERIPYLGE 750

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           PF        I+ EG GLGL +   +++ + GK +I S    GT++E+  P+
Sbjct: 751 PFY------SIKEEGIGLGLMICYKIIETHQGKIFIESEMNTGTIVEVTLPI 796



 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 44/286 (15%), Positives = 91/286 (31%), Gaps = 21/286 (7%)

Query: 313 AYFDEGENLTPETVDKCPIPFF----VYSHGNLFYANPSFLLLTKYKSVDDIEI-AGGLS 367
               + +    +TV +     F    V  H      +  F     + S   +      + 
Sbjct: 186 RELKKSKQELADTVHELQGGIFKFKKVGKHFIHTLCDGQFYYQNGFYSEQVVGKSLRTID 245

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
             +  P L          L   +   I        + W  + ++ +         +  + 
Sbjct: 246 ASIVPPHLVPQLMKY--YLQAWEGNEIIFE-----LPWPNDKTIILI--ALRPIKRNGQV 296

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
           +   G   +  + +  + ++      L S ++   D I I +REG IL  N+A  K+FG+
Sbjct: 297 IEVVGSTVDITERKKVESELSATKELLESFIKHNLDAITISDREGHILQANKAYEKIFGW 356

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
             ++I+ K     +           + +IL           T+    +  LL + + +  
Sbjct: 357 SSQEIIGKRL-PCVPDFLMEESLENIQKIL-TGESVVTRLETVRQRSDGSLLDISLTVSP 414

Query: 548 LPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
           +               DISE KQ + +     +   ++S  K   L
Sbjct: 415 ILDVRGNVIALSAICRDISERKQAERERHRLHQQL-RDSEMKYRAL 459



 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/287 (13%), Positives = 84/287 (29%), Gaps = 25/287 (8%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG-KTT 148
           D  G++ + ++   K  G  + ++IG RL  V D L  +   +I  +L  ++     +T 
Sbjct: 338 DREGHILQANKAYEKIFGWSSQEIIGKRLPCVPDFLMEESLENIQKILTGESVVTRLETV 397

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +G+ L + + ++  PI              I               RL ++     
Sbjct: 398 RQRSDGSLLDISLTVS--PILDVRGNVIALS--AICRDISERKQAERERHRLHQQLRDSE 453

Query: 209 EIKKGHSSVEKEKYDIFSQQS-----------PPPHLR---MKNKVSSLT-EYYAHKDDV 253
              +       +   +                P    R    + ++ SL+      +D  
Sbjct: 454 MKYRALIEQATDAVYVVELNEDNVPSRFIEVNPVGCRRFGYSREELLSLSFLNIVPQDSQ 513

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
           +       +   ++S   Q+++        T +               +LS     +   
Sbjct: 514 IIVRLLEKIKKGQTSFTLQDEYVFPTGKVITTEFSVRVFN--LNGKKVFLSISRDITERL 571

Query: 314 YFDEGENLTP--ETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVD 358
             +E    +     V +       +   N   A   F+ L K    +
Sbjct: 572 KTEELLRKSEKLAVVGQLATA-MAHEINNPLTAMKGFMQLLKSTENE 617


>gi|163793613|ref|ZP_02187588.1| Signal transduction histidine kinase [alpha proteobacterium BAL199]
 gi|159181415|gb|EDP65930.1| Signal transduction histidine kinase [alpha proteobacterium BAL199]
          Length = 649

 Score =  320 bits (819), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 127/635 (20%), Positives = 223/635 (35%), Gaps = 17/635 (2%)

Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE 245
            +       A              +    S +             P  L           
Sbjct: 3   DSTTLPPDIAPLIEALNHADVGLAVFDRKSVLLFCNSRFQEIFDYPEALVTPGTTREALL 62

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ--YFGTLQNNSKESFEYL 303
            +  +   L       L  E+    +    H I L + + +Q         +      Y 
Sbjct: 63  RFDAERGELGPGNVDDLVREQLERVQYHIEHQIELTRSSGRQIKVVNRPLPSGGNVSTYH 122

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEI 362
              +        D       + +D  P    V+     L YAN     ++     +    
Sbjct: 123 ERLDDRKSLLGADLTFEALQQALDYAPDGLRVWDAKDRLIYANARIRRVS-----EAEGT 177

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
                   +    +                 +     +H +      +           +
Sbjct: 178 PLRPGMTFEEHIRARVAKNLVAEAEADPEAYVQQRLEMHRLGGRSYTTRLRDGRWVVIRD 237

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
               +        +  D +  ++       +    ++A+SD    ++             
Sbjct: 238 HRLPDGGTVTTSQDITDIKRVEQAYRESEQRFHDFVDASSDRFWEMDENLRFTMVVDTAV 297

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
                PV  +L K        +          + +        +        +      R
Sbjct: 298 GRREPPVAQVLGKTRWANAGVDVEDDPLFTTHKAVLDAREPFRDFRYEVPAADGSPRHWR 357

Query: 543 IIIKKLPFSSC----YSLTMHDISE----WKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
           +    +         Y  T  D +E      + + +L  A + AE  +  KS FLA VSH
Sbjct: 358 VSGVPVFDEGGKFCGYRGTAADETEFSTELTRAQRELQEALRQAEIANRSKSLFLATVSH 417

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           E+RTPL AIIGFS+++  + FGPLG+ RY  YA+ I  SG  +L ++ D+LD+S+IE G+
Sbjct: 418 ELRTPLNAIIGFSDLLAQKVFGPLGDERYEGYAHDIQTSGQHLLSLIEDVLDLSRIEMGQ 477

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714
           + L    V L   +  A+++V+    ++   I+   A   P + AD R ++QI +N++SN
Sbjct: 478 IRLRLGLVDLPIEIQAAVAMVRARRGQEIASIQIEVAEGFPTLNADARLIRQILINLISN 537

Query: 715 AIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           A  FTP  G+I+++     +  + + V D G+G+   +  K ++PF Q  N    R EG 
Sbjct: 538 AAKFTPPSGRILVTAQVVDDG-ISIAVIDDGIGIDPADHAKVLRPFEQADNRLSRRYEGV 596

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GLGLPL KA V+ + G+  + S   +GT I I  P
Sbjct: 597 GLGLPLTKAFVEVHNGQLQLESAIGEGTTITIRLP 631



 Score = 58.1 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 50/398 (12%), Positives = 110/398 (27%), Gaps = 16/398 (4%)

Query: 54  FTDQNQESVSNTNYLDSENTFVFDP--IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAF 111
            T Q+   +        E+   F       + RF W +D +     + +           
Sbjct: 247 TTSQDITDIKRVEQAYRESEQRFHDFVDASSDRF-WEMDENLRFTMVVDTAVGRREPPVA 305

Query: 112 KMIGMR-LCDVSDILHIDPN-NHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIY 169
           +++G     +    +  DP       +L  +  +       P    +      ++ +P++
Sbjct: 306 QVLGKTRWANAGVDVEDDPLFTTHKAVLDAREPFRDFRYEVPAADGSPRHW-RVSGVPVF 364

Query: 170 SRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSS-VEKEKYDIFSQQ 228
               +F G+RG               L +   +    L + +  + S            +
Sbjct: 365 DEGGKFCGYRG----TAADETEFSTELTRAQRELQEALRQAEIANRSKSLFLATVSHELR 420

Query: 229 SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288
           +P   +   + + +   +    D+  +   + + TS +  L   ED   ++  +  + + 
Sbjct: 421 TPLNAIIGFSDLLAQKVFGPLGDERYEGYAHDIQTSGQHLLSLIEDVLDLSRIEMGQIRL 480

Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYAN-PS 347
              L +   E    ++            E  ++  E  +  P              N  S
Sbjct: 481 RLGLVDLPIEIQAAVAMVRARRG----QEIASIQIEVAEGFPTLNADARLIRQILINLIS 536

Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
                   S   +  A  +   +    + D   I P    +  R    A  RL       
Sbjct: 537 NAAKFTPPSGRILVTAQVVDDGISIAVIDDGIGIDPADHAKVLRPFEQADNRLSRRYEGV 596

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
              L +T    E  N   +     G           +R
Sbjct: 597 GLGLPLTKAFVEVHNGQLQLESAIGEGTTITIRLPKER 634


>gi|119486822|ref|ZP_01620797.1| two-component sensor histidine kinase [Lyngbya sp. PCC 8106]
 gi|119456115|gb|EAW37248.1| two-component sensor histidine kinase [Lyngbya sp. PCC 8106]
          Length = 810

 Score =  320 bits (819), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 87/693 (12%), Positives = 218/693 (31%), Gaps = 78/693 (11%)

Query: 181 FGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS--PPPHLRMKN 238
           F +           A  +  ++    + E      +    + +               ++
Sbjct: 133 FALQREIIERQQAEAALRNSEELLRAIFEQAAIGIARVGFQGEWLQVNQTLCDLFGYTRD 192

Query: 239 KVSSLTEYYAHKDDVL---KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN 295
           ++  L        D L    +    LL+ + S+   +                   + + 
Sbjct: 193 ELLQLKCQDLTDSDHLDYNTSFIEHLLSKKISTCSLERCLVRKKGTLIWVHLSVSLVCDQ 252

Query: 296 SKESFEYLSHRNHPSLSAYFDEG------------------------------------- 318
            ++   +++     +     +                                       
Sbjct: 253 DRKPIYFIAVAEDITQRKQSEAEIKKLNQELEKRVHKRTAQLQQINNNLAAEINKCTLIE 312

Query: 319 ------ENLTPETVDKCPIPFFVY----SHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
                 +      +   P   +       +G   Y + +   +T Y++ + +E     S 
Sbjct: 313 QQLNLTQERLQFLLSSSPGAIYTSIPTGDYGA-TYMSQTIYSITGYQAWEFVEK----SQ 367

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
                   D+       L +   T        +           +        N   ++ 
Sbjct: 368 FWAERVHPDDLEKAFNQLSQVLETGT--EILEYRFLHKNNTYRWIRDELKLIHNHISQST 425

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
              G   +  + +  +  +     +   +  +    I + N        N+      G  
Sbjct: 426 EIIGYMIDITEHKQTEISLRESEERFRLMANSAPVLIWVCNSNSQCTFVNQVWLDFTGRT 485

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI----I 544
           +E  L + +   +  +    + +        + +++          + +   +       
Sbjct: 486 LEQELGRGWLDNIHPDDAQYLLN--NNFSKCNHKESFTNEFRLRRWDGEYRWILNQGVPR 543

Query: 545 IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
           +      S Y  +  DI+E KQ +  L    +   + +     F    SH+++ PL  + 
Sbjct: 544 MTADGNFSGYIGSCIDITERKQAEELLFTLNRELLQSNRELEQFAYVASHDLQEPLRIVS 603

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
            FS+++  +    L       Y  YI  +   +  ++ DLL  S++ + K   +FE V  
Sbjct: 604 LFSQLLARKYQDNLDEETQT-YIYYIVDAATRMQQLIKDLLAYSQVGTSKSTANFERVDC 662

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724
           ++ + +A+  +Q+   ++  +I ++    +P ++AD + +  +  N++ NAI +      
Sbjct: 663 NQVLQQALQNLQVAITKQNAIINSN---QLPTVIADPQQLVILWQNLIGNAIKYCHPEVS 719

Query: 725 IIISTTHTSN-------EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
             I      N       +E    VRD G+G+ +   E+  K F ++ +SQ     GTG+G
Sbjct: 720 PYIEIGIRPNLIDESQTQEWCFSVRDNGIGINSEYFERIFKIFQRLHHSQ--EYPGTGIG 777

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           L + + +V+ + G+ ++ S   +G+      P+
Sbjct: 778 LAICQKIVERHGGRIWVKSEENQGSTFYFTLPM 810



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 49/429 (11%), Positives = 117/429 (27%), Gaps = 71/429 (16%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLL-KRQNTWYG 145
            +   G   ++++ L    G    +++ ++  D++D  H+D N   I  LL K+ +T   
Sbjct: 169 RVGFQGEWLQVNQTLCDLFGYTRDELLQLKCQDLTDSDHLDYNTSFIEHLLSKKISTCSL 228

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +  L   +GT   + + L+   +  ++R+   F    +           A  K+L+++  
Sbjct: 229 ERCLVRKKGTL--IWVHLSVSLVCDQDRKPIYF--IAVAEDITQRKQSEAEIKKLNQELE 284

Query: 206 HLHE-----------------------------IKKGHSSVEKEKYDIFSQQSPPPHLRM 236
                                             ++    +            P      
Sbjct: 285 KRVHKRTAQLQQINNNLAAEINKCTLIEQQLNLTQERLQFLLSSSPGAIYTSIPTGDYGA 344

Query: 237 KN-----------------KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTIN 279
                              + S       H DD+ K         E  +   +  F   N
Sbjct: 345 TYMSQTIYSITGYQAWEFVEKSQFWAERVHPDDLEKAFNQLSQVLETGTEILEYRFLHKN 404

Query: 280 LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC----PIPFFV 335
                 +     + N+  +S E + +    +     +     + E         P+  +V
Sbjct: 405 NTYRWIRDELKLIHNHISQSTEIIGYMIDITEHKQTEISLRESEERFRLMANSAPVLIWV 464

Query: 336 Y-SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394
             S+    + N  +L  T      ++   G L  +         N       ++      
Sbjct: 465 CNSNSQCTFVNQVWLDFTGRTLEQEL-GRGWLDNIHPDDAQYLLNNNFSKCNHKE----- 518

Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK-------RKM 447
           + +      +W+ E    +      +           G   +  + +  +       R++
Sbjct: 519 SFTNEFRLRRWDGEYRWILN-QGVPRMTADGNFSGYIGSCIDITERKQAEELLFTLNREL 577

Query: 448 EIEVMQLCS 456
                +L  
Sbjct: 578 LQSNRELEQ 586



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/154 (14%), Positives = 47/154 (30%), Gaps = 6/154 (3%)

Query: 69  DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID 128
           +SE  F        V   W  +++     +++      G    + +G    D        
Sbjct: 446 ESEERFRLMANSAPV-LIWVCNSNSQCTFVNQVWLDFTGRTLEQELGRGWLDNIHPDDAQ 504

Query: 129 P-NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187
              N+       + ++  +  L   +G   Y  I    +P  + +  FSG+ G  I    
Sbjct: 505 YLLNNNFSKCNHKESFTNEFRLRRWDGE--YRWILNQGVPRMTADGNFSGYIGSCI--DI 560

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEK 221
                   L   L+++    +   +  + V    
Sbjct: 561 TERKQAEELLFTLNRELLQSNRELEQFAYVASHD 594



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 29/392 (7%), Positives = 94/392 (23%), Gaps = 43/392 (10%)

Query: 96  KEISEELPKTIGNYAFKMIGMR--LCDVSDILHIDPN-NHIGDLLKRQNTWYGKTTLWPI 152
             +S+ +    G  A++ +       +      ++   N +  +L+   T   +      
Sbjct: 345 TYMSQTIYSITGYQAWEFVEKSQFWAERVHPDDLEKAFNQLSQVLETG-TEILEYRFLHK 403

Query: 153 EGTNLYVPIDLAA-LPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
             T  ++  +L       S++ E  G+                   +  +++F  +    
Sbjct: 404 NNTYRWIRDELKLIHNHISQSTEIIGYMI-----DITEHKQTEISLRESEERFRLMANSA 458

Query: 212 KGHSSV---EKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE-S 267
                V     +   +           ++ ++        H DD                
Sbjct: 459 PVLIWVCNSNSQCTFVNQVWLDFTGRTLEQELGRGWLDNIHPDDAQYLLNNNFSKCNHKE 518

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
           S   +      +                      Y+      +     +E          
Sbjct: 519 SFTNEFRLRRWDGEYRWILNQGVPRMTADGNFSGYIGSCIDITERKQAEELLFTLNR--- 575

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
                        L  +N        Y +  D++    + +L              ++  
Sbjct: 576 ------------ELLQSNRELEQ-FAYVASHDLQEPLRIVSLF-----------SQLLAR 611

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT--RINKR 445
           +        +        +    +          +Q   +      E  D +   +   +
Sbjct: 612 KYQDNLDEETQTYIYYIVDAATRMQQLIKDLLAYSQVGTSKSTANFERVDCNQVLQQALQ 671

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILST 477
            +++ + +  +I+ +      I + + +++  
Sbjct: 672 NLQVAITKQNAIINSNQLPTVIADPQQLVILW 703


>gi|154498538|ref|ZP_02036916.1| hypothetical protein BACCAP_02528 [Bacteroides capillosus ATCC
           29799]
 gi|150272606|gb|EDM99791.1| hypothetical protein BACCAP_02528 [Bacteroides capillosus ATCC
           29799]
          Length = 589

 Score =  320 bits (819), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 87/371 (23%), Positives = 163/371 (43%), Gaps = 24/371 (6%)

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
              R   R+ E E  +L ++    +DG+   +R+G ++  N A  ++    +     +  
Sbjct: 234 RQLRDTIREAENERNKLGTLFLHMTDGVVAFSRDGAVIQCNPAAERMLHRTIPVGGDE-- 291

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT 557
              +  +T       L  +L+++    L+        +  +L L +       +    + 
Sbjct: 292 ---VTYDTLFGDIAALPSVLAVEQPGYLDGE---REIDGTILELLLAPFSSESAGGVMVV 345

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
           +HD++E ++ +                + +F+A VSHE+RTPLT I  ++E + +   G 
Sbjct: 346 IHDVTEQRKTEE--------------MRREFVANVSHELRTPLTNIRSYAETLVDNA-GE 390

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
           L       +   I    + +  IV DLL +S+ +SG   L   P S + A+ +  + V L
Sbjct: 391 LPPNMEKNFLGVILNESDRMTHIVQDLLTLSRFDSGHSELKLAPFSFEGAIRDVYNAVLL 450

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737
            A      +R     N+P IL D   + Q+ +N++SNAI +TP GG I IS     +  V
Sbjct: 451 DAQRHGHTLRLGIEENLPNILGDRERILQVMMNVVSNAIKYTPDGGSIAISAGRLRD-RV 509

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
            + V D G+G+   +  +  + F ++  ++     GTGLGL +AK ++D + G   +   
Sbjct: 510 WMEVADNGIGIPAADRPRIFERFYRVDKARSRESGGTGLGLSIAKEIIDRHEGVIRLVDK 569

Query: 798 PAKGTLIEIIF 808
              G  + +  
Sbjct: 570 DGPGLTVRVEL 580


>gi|312793663|ref|YP_004026586.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312180803|gb|ADQ40973.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 575

 Score =  320 bits (819), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 88/368 (23%), Positives = 164/368 (44%), Gaps = 29/368 (7%)

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
             +L S+L++   GI   +    IL  NR    +              V       + + 
Sbjct: 235 RKRLTSLLDSLDIGIIFFDVNKRILMFNRGAENIL--------ETNLKVGFSLLECARVY 286

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI-IIKKLPFSSCYSLTMHDISEWKQEKN 569
                +   D+ +  E     + K  K L +    I            + DI+  K+ + 
Sbjct: 287 ELFEFLFQQDINEK-ELEVSINNKT-KFLKVSKKRISYEDNKEGVLFILSDITFLKKLE- 343

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
                          +SDF+A VSHE++TPLT+I GF E +K+            ++ N 
Sbjct: 344 -------------RIRSDFVANVSHELKTPLTSIKGFVETLKDGAID--DKDVATKFLNI 388

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I+     ++ ++NDLL +S+IE+  M +  E V + E V E+I L+++ A +K I +   
Sbjct: 389 IEVEVERLVRLINDLLYLSEIENAAMPILEEKVVVKEVVLESIELLKIKAEKKNIQLDVK 448

Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749
               +  +      +KQI +N++ NAI +    G++ ++   + +  V ++V+DTG+G+ 
Sbjct: 449 VQEGL-EMNIYRDWLKQIFINLIDNAIVYNKENGKVWVTVEKSDS-TVTIKVKDTGIGIP 506

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             E+E+  + F ++   +  +  GTGLGL + K +V+   GK ++ S    G+   +  P
Sbjct: 507 EKEIERIFERFYRVDKGRSRKLGGTGLGLSIVKHIVELYGGKVWVESQEGIGSEFTVTIP 566

Query: 810 LYDTSHPH 817
           +   + PH
Sbjct: 567 IVKKADPH 574


>gi|294495585|ref|YP_003542078.1| multi-sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
 gi|292666584|gb|ADE36433.1| multi-sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
          Length = 736

 Score =  320 bits (819), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 123/554 (22%), Positives = 214/554 (38%), Gaps = 65/554 (11%)

Query: 310 SLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
                  + E       +        V S G +   N        Y+  + I        
Sbjct: 192 RNFELLKKSEQRYRSIFETAANLITSVDSKGIIVDCNNQIKNFLGYEKDEIIGHPMSK-- 249

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
            +  P   D        L R   T  +       ++ N E   A+        +      
Sbjct: 250 -ILHPDYHDKAFGS---LQRIIVTGYSKDKEYKMVKKNGELIDAIINSSGINKSAEGYE- 304

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLC-------SIL-EATSD----GIA---------- 466
             N I  +  +   N +++      L        +I+ E+  D    GI           
Sbjct: 305 RINCIISDITERNQNLQRINFLTDTLRCIRDVNQTIVKESNPDDLLQGICDSLVRYNTYT 364

Query: 467 -----IINREGIILS-----TNRAVSKL--------FGYPVEDILRKPFTVFLEQNTPSV 508
                + +    I        +    +           Y V+ +L++   + L+      
Sbjct: 365 NVWLCLFDENKKINIIKESGFSDKFEEFVHSLKNVGLPYCVQRVLKERDYIILDNPVNEC 424

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL---TMHDIS--- 562
           ++  L +    +             KE  ++SL I  K        SL    + DIS   
Sbjct: 425 IDCPLKD--EKNGTAIFVSKLQYGPKEYGIISLSIPEKHANDEEIISLSKEVVGDISFSL 482

Query: 563 -------EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
                    ++ +  L   + +AE+ +  KS+FLA +SHE+RTPL ++IGFS+V++    
Sbjct: 483 YNLELEATRQKGEESLIEGRIVAEEANRTKSEFLANMSHELRTPLNSVIGFSQVLETNSS 542

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
             L +     Y   I  SG+ +L+++N++LDISK+ESGKM+   E V+L E + + I LV
Sbjct: 543 NHLDDKEQK-YVKNIYESGSHLLELINNILDISKVESGKMDYLPETVNLTEIIDDTIVLV 601

Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
           +  A +K + +  +  +    I  D    K+I  N+LSNAI FTP  G + +++    N+
Sbjct: 602 EPMAKKKSVDLHLNIKSEDLEIHVDRLKFKEIMYNLLSNAIKFTPEKGTVSVNSKCV-NK 660

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
              + V DTG+G+   + E    PF Q+ ++      GTGLGL L +  V+ + G+ ++ 
Sbjct: 661 NFQISVSDTGIGVPKEKFESIFDPFKQVDSTSSRSFGGTGLGLALVRKYVEMHGGEIWVE 720

Query: 796 STPAKGTLIEIIFP 809
           S    G+      P
Sbjct: 721 SEVGVGSTFTFTLP 734


>gi|262275446|ref|ZP_06053256.1| putative sensory box sensor histidine kinase/response regulator
           [Grimontia hollisae CIP 101886]
 gi|262220691|gb|EEY72006.1| putative sensory box sensor histidine kinase/response regulator
           [Grimontia hollisae CIP 101886]
          Length = 877

 Score =  320 bits (819), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 101/389 (25%), Positives = 175/389 (44%), Gaps = 18/389 (4%)

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
              E    +   +++ ++   L  I+E + +   I +  G +  +N+A+  LFG+   + 
Sbjct: 224 TYQELSLEKNRYKQLAVQNKMLAEIVEQSHEAYLITDLSGYVSLSNKALDNLFGFRDNEA 283

Query: 493 LRKPFTVFLEQNTPSVMNHY-LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
             K F   L     +    Y L + + L    T+    L    + + +   I    +  +
Sbjct: 284 CDKDFQTLLFGENTAEEAAYQLRDAMQLGQSITVRAECLSI--DGRAVQTEITAFPIVNN 341

Query: 552 SC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
           +     Y L + D+ E  + +  L HA   A + +  KS FLA +SHEIRTP+  IIG S
Sbjct: 342 AGVNDRYVLIVRDVHEQLEFEKALKHAADTAHQATRAKSQFLANMSHEIRTPMNGIIGVS 401

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
           E+++              + + I  S   +L ++ND+LD SK+E  K+ L  E   L   
Sbjct: 402 EMLRESSL----PKEQKGFVDIIYSSAKSLLQLINDILDFSKLEEKKLKLSEETFCLRTM 457

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII 726
           V E  S+V + A+ K +L+      +I   +++D   ++Q+  N+L NA+ FT  G  I 
Sbjct: 458 VEETASMVAISASRKELLVVVDIPPDINTLVISDELRLRQVFNNLLGNAVKFTEHG-YIR 516

Query: 727 ISTTHTS-----NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           IS          +    L + DTG+G+   +L    K F Q+ +S   R +GTGLGL + 
Sbjct: 517 ISVRAEPKPGDTSSTYTLTIEDTGIGIPEDKLSDITKAFEQVNSSTSRRYKGTGLGLSIT 576

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           K+++     +  + S   KG+       L
Sbjct: 577 KSLLSLFNSELEVVSEYNKGSRFSFTLTL 605


>gi|260596161|ref|YP_003208732.1| aerobic respiration control sensor protein ArcB [Cronobacter
           turicensis z3032]
 gi|260215338|emb|CBA27320.1| Aerobic respiration control sensor protein arcB [Cronobacter
           turicensis z3032]
          Length = 779

 Score =  320 bits (819), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 89/435 (20%), Positives = 182/435 (41%), Gaps = 17/435 (3%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L            +L  +Q     +     I   +  +         ++ E
Sbjct: 81  EESRQRLSKLVDKLEEMRERDLKL-NVQLKDNIAQLNQEIADREKAEAERQNMLEQLKVE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             +  + + ++E +   L S L+A+ D +   N +      NRA+  L G   + ++   
Sbjct: 140 MKEREVTQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLIGLK 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCY 554
                       +     ++   ++  T E+        +    +R +    ++      
Sbjct: 200 PHEVYAPEAAEKVLETDEKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGL 259

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+        +   E+ S  K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 260 MGFGRDITERKR-------YQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTD 312

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     +Y   I  S   + +I ND++D+ KIE  K+ L  +PV     +++  +L
Sbjct: 313 LSA----EQEKYLKTIHVSAVTLGNIFNDIIDMDKIERRKVQLDNQPVDFTSFLADLENL 368

Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
             L A +K +         +P  +L D   ++QI  N++SNA+ FT  G Q+ +  ++  
Sbjct: 369 SGLQAQQKGLRFVMEPVRPVPHKVLTDGTRLRQILWNLISNAVKFTQQG-QVTVRVSYND 427

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMGKF 792
           NE++   V D+G+G+   E +K    + Q+ +SQ  +   GTG+GL +++ +  +  G  
Sbjct: 428 NEQLRFEVEDSGIGIPQEEQDKIFAMYYQVKDSQGGKPATGTGIGLAVSRRLAKSMGGDI 487

Query: 793 YIFSTPAKGTLIEII 807
            + S P +G+   + 
Sbjct: 488 TVSSKPGQGSTFVLT 502



 Score = 43.1 bits (100), Expect = 0.22,   Method: Composition-based stats.
 Identities = 11/161 (6%), Positives = 35/161 (21%), Gaps = 8/161 (4%)

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIE 361
           +  +         ++  +     +D  P   F  +        N +  LLT       I 
Sbjct: 138 VEMKEREVTQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLIG 197

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
           +      +               +          +      + +                
Sbjct: 198 LKPH--EVYAPEAAEKVLETDEKVFRH-----NVSLTYEQWLDYPDGRKACFEIRKVPYY 250

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
           ++  +     G   +  + +  +  +E       + +   S
Sbjct: 251 DRVGKRHGLMGFGRDITERKRYQDALERASRDKTTFISTIS 291



 Score = 42.3 bits (98), Expect = 0.33,   Method: Composition-based stats.
 Identities = 16/124 (12%), Positives = 37/124 (29%), Gaps = 5/124 (4%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN-TWYGKTTLWPIE 153
               +  +    G    ++IG++  +V      +      + + R N +   +  L   +
Sbjct: 177 FSGCNRAMELLTGKSEKQLIGLKPHEVYAPEAAEKVLETDEKVFRHNVSLTYEQWLDYPD 236

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
           G       ++  +P Y R  +  G  GFG           +   +R  +  +        
Sbjct: 237 GRKACF--EIRKVPYYDRVGKRHGLMGFG--RDITERKRYQDALERASRDKTTFISTISH 292

Query: 214 HSSV 217
               
Sbjct: 293 ELRT 296


>gi|254559125|ref|YP_003066220.1| sensor hybrid histidine kinase with multiple PAS/PAC, GAF and
            response regulator receiver domains [Methylobacterium
            extorquens DM4]
 gi|254266403|emb|CAX22167.1| putative sensor hybrid histidine kinase with multiple PAS/PAC, GAF
            and response regulator receiver domains [Methylobacterium
            extorquens DM4]
          Length = 1222

 Score =  320 bits (819), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 117/798 (14%), Positives = 239/798 (29%), Gaps = 100/798 (12%)

Query: 86   TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWY 144
             W+    GY    +E      G  A    G     +      +         L     + 
Sbjct: 317  IWSTRPDGYHDFYNERWYAFTGVPAGTTDGEAWNGMFHPDDRERAWAAWQHALATGENYQ 376

Query: 145  GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
             +  L    G  LY  +   A P+   +      R FG                 L    
Sbjct: 377  IEYRLRHRSG--LYRWVLGRAQPVRDADGRIV--RWFGTCTDIHDRKLAEERQAFLLGLN 432

Query: 205  SHLHE---------------------IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL 243
              L E                      + G+  +++    +  ++       + +   + 
Sbjct: 433  DRLREADEPQAVTLAAAATLGAHIGVARAGYGEIDETGEIVRVERDWTRDPSVPSLAGAS 492

Query: 244  TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYT---KKQYFGTLQNNSKESF 300
                     V+   +  L    E    +    H       +   +      L    +   
Sbjct: 493  RILDGFGPAVIAELRAGLTLVVEDCYADPRAGHDYAATWDSIGCRSLVVVPLIREGRLRA 552

Query: 301  EYLSHRNHPSLSAYFDEG-------------------------ENLTPETVDKCPIPFFV 335
                H   P +    + G                                 D  P+   +
Sbjct: 553  ILYLHEPKPRVWRAEEIGLVEDVAQRVGHAAERARAEQAERANARELRLIADSLPVLIAL 612

Query: 336  YSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394
            +    +  +AN +          + +     L+ L+     ++            D    
Sbjct: 613  FDADGVCRFANAASADWFGVAPAESVGQT--LAALIGPADFAEARPRFESARAGRD---- 666

Query: 395  AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV--- 451
               A     + +    +A       +               +  D +  +  +E EV   
Sbjct: 667  -VRAERAWPRRDGSPRIA-DIRYLPRPMPDGSTDGAYLFVTDISDAKRIEAMLEREVGER 724

Query: 452  -MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
              +   + + T+D +     +G + S N A  +L G+  +++L +PF  F++    +   
Sbjct: 725  TRERDRLWQTTNDLMGTAGLDGHLRSVNPAWGRLLGWSEQELLERPFLDFIDPEDHAGTG 784

Query: 511  HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570
              L  +      Q  + +    +K+ +  ++         S C+ +   DI++ +  + +
Sbjct: 785  AVLARLA--GSDQITDFVDRILSKDGRRRTVMWTAVP--ESGCFHIVGRDITDQRLAEEQ 840

Query: 571  LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
            L  A+K+              ++H+    LT IIG  + +   R           YA   
Sbjct: 841  LRQAQKM-----EAVGQLTGGIAHDFNNLLTGIIGSLD-LMQTRIAQGRIDTLERYAGAA 894

Query: 631  DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
              S +    + + LL  ++    +  L  +PV ++  +++   +++  A  +++ +    
Sbjct: 895  LTSAHRAASLTHRLLAFAR----RQPLEQKPVDVNALLADMEEMLR-RALPEQVHLDIVA 949

Query: 691  ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT--------------HTSNEE 736
               +   L D   ++   LN+  NA    P GG++++ T+                    
Sbjct: 950  TEGVWPTLCDPHQLENAVLNLAINARDAMPEGGRLLVETSNAHLGPADLRLHSGAREGAY 1009

Query: 737  VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
            V +RV DTG GM      +A +PF          G GTGLGL +       + G   I S
Sbjct: 1010 VCIRVTDTGHGMPPEVAARAFEPFFTTKPL----GMGTGLGLSMIYGFARQSEGHARIVS 1065

Query: 797  TPAKGTLIEIIFPLYDTS 814
             P +GT + I  P Y  +
Sbjct: 1066 EPGRGTTVTICLPRYRGA 1083



 Score =  115 bits (288), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 43/553 (7%), Positives = 131/553 (23%), Gaps = 62/553 (11%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAF----KMIGMRLCDVSDILHIDP-NNHIGDLLKRQN 141
           W++ A   +           G                       +      IG +     
Sbjct: 190 WDVSAD-RVT-ADPRFAALYGVDPEMAAAGAPIAAFFSGVHPDDLPSLKASIGAVFGTGG 247

Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
            +  +     ++G      +          +     F G  +              +   
Sbjct: 248 QFDAE--YRLVQGDGSIRWVAARGRCTLGEDGTPRHFPG--VSFDITERKRIEQALRDSQ 303

Query: 202 KKFSHLHEIKKGHSSVEKEK-----YDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256
            +F  +           +       Y+              +  +    ++    +    
Sbjct: 304 DRFRGIINSVDQMIWSTRPDGYHDFYNERWYAFTGVPAGTTDGEAWNGMFHPDDRERAWA 363

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
                L + E+    +      +            +++       +             +
Sbjct: 364 AWQHALATGEN-YQIEYRLRHRSGLYRWVLGRAQPVRDADGRIVRWFGTCTDIHDRKLAE 422

Query: 317 EGENLTPETVDKCP-------------------IPFFVYSHGNLFYANPSFLLLTKYKSV 357
           E +       D+                     I      +G +        +   +   
Sbjct: 423 ERQAFLLGLNDRLREADEPQAVTLAAAATLGAHIGVARAGYGEIDETGEIVRVERDWTRD 482

Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKP-VMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
             +    G S +LD    +    ++  + L   D      +   +   W+     ++  +
Sbjct: 483 PSVPSLAGASRILDGFGPAVIAELRAGLTLVVEDCYADPRAGHDYAATWDSIGCRSLVVV 542

Query: 417 PFEKANQFPENMP------------QNGIEPEDVDT-------RINKRKMEIEVMQLCSI 457
           P  +  +    +             + G+  +              ++       +L  I
Sbjct: 543 PLIREGRLRAILYLHEPKPRVWRAEEIGLVEDVAQRVGHAAERARAEQAERANARELRLI 602

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
            ++    IA+ + +G+    N A +  FG    + + +     +     +          
Sbjct: 603 ADSLPVLIALFDADGVCRFANAASADWFGVAPAESVGQTLAALIGPADFAEARPRFESAR 662

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAK 575
           +    +  E+         ++  +R + + +P        L + DIS+ K+ +  L   +
Sbjct: 663 AGRDVRA-ERAWPRRDGSPRIADIRYLPRPMPDGSTDGAYLFVTDISDAKRIEAML---E 718

Query: 576 KIAEKESSHKSDF 588
           +   + +  +   
Sbjct: 719 REVGERTRERDRL 731



 Score =  110 bits (275), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 32/424 (7%), Positives = 102/424 (24%), Gaps = 31/424 (7%)

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ---------SPPPHLR 235
                          L+     L        +     +  +  +          P    R
Sbjct: 22  REILAYPWSDTPLGPLEDWPVSLRTTLATMLACPAAMFLAWGPEGISFFNDAYRPVFGDR 81

Query: 236 MKNKVSS----LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291
           +   + +    +          L        +  + +LP   D + +          +  
Sbjct: 82  LPRALGARFREIWADLWEDIGPLVDAALRGESVAQRNLPLLMDRYGVPEE-SWWSFTYSP 140

Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC-----PIPFFVYS--HGNLFYA 344
           +++++      +      +     +     + E ++        I  + +      +  A
Sbjct: 141 VRDDAGRINGMICVTAETTAEVLAERARRRSDERLEMALSAGGSIGIWDWDVSADRVT-A 199

Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
           +P F  L       ++  AG       +    D+       +     T     A    +Q
Sbjct: 200 DPRFAALYGVDP--EMAAAGAPIAAFFSGVHPDDLPSLKASIGAVFGTGGQFDAEYRLVQ 257

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
            +  +   +         +        G+  +  + +  ++ +     +   I+ +    
Sbjct: 258 GDG-SIRWVAARGRCTLGEDGTPRHFPGVSFDITERKRIEQALRDSQDRFRGIINSVDQM 316

Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
           I     +G     N       G P      + +      +            L+    + 
Sbjct: 317 IWSTRPDGYHDFYNERWYAFTGVPAGTTDGEAWNGMFHPDDRERAWAAWQHALATG--EN 374

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEK 580
            +       +      +    + +  +      +  T  DI + K  + + +    + ++
Sbjct: 375 YQIEYRLRHRSGLYRWVLGRAQPVRDADGRIVRWFGTCTDIHDRKLAEERQAFLLGLNDR 434

Query: 581 ESSH 584
               
Sbjct: 435 LREA 438



 Score = 88.9 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 25/373 (6%), Positives = 77/373 (20%), Gaps = 27/373 (7%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN-TWYGKTT 148
              G +   ++      G+   + +G R  ++   L  D    +   L+ ++        
Sbjct: 63  GPEG-ISFFNDAYRPVFGDRLPRALGARFREIWADLWEDIGPLVDAALRGESVAQRNLPL 121

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           L    G            P+       +G     +      +       +R D++     
Sbjct: 122 LMDRYGVPEESWWSFTYSPVRDDAGRINGM--ICVTAETTAEVLAERARRRSDERLEMAL 179

Query: 209 EI----------KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
                                 ++       P          +  +  +      LK   
Sbjct: 180 SAGGSIGIWDWDVSADRVTADPRFAALYGVDPEMAAAGAPIAAFFSGVHPDDLPSLKASI 239

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS----HRNHPSLSAY 314
             +  +       +      + +                    +            +   
Sbjct: 240 GAVFGTGG-QFDAEYRLVQGDGSIRWVAARGRCTLGEDGTPRHFPGVSFDITERKRIEQA 298

Query: 315 FDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
             + ++     ++      +     G   + N  +   T   +      A   + +    
Sbjct: 299 LRDSQDRFRGIINSVDQMIWSTRPDGYHDFYNERWYAFTGVPAGTTDGEA--WNGMFHPD 356

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
                 A        +         RL   +        +        +     +   G 
Sbjct: 357 D--RERAWAAWQHALATGENYQIEYRL---RHRSGLYRWVLGRAQPVRDADGRIVRWFGT 411

Query: 434 EPEDVDTRINKRK 446
             +  D ++ + +
Sbjct: 412 CTDIHDRKLAEER 424


>gi|227532779|ref|ZP_03962828.1| histidine kinase [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|227189613|gb|EEI69680.1| histidine kinase [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
          Length = 636

 Score =  320 bits (819), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 84/383 (21%), Positives = 164/383 (42%), Gaps = 48/383 (12%)

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
             +L S+L   +DG+   +R G ++  N+          ED++       L       + 
Sbjct: 264 RRRLDSVLAHMTDGVIATDRRGNVIIINQTALNFLNTRNEDVIGVSILKLLNIAKDYTLR 323

Query: 511 HYLTEILSL--DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568
             L     L  D  + L+   +        +   +I ++  F S     +HD++E ++  
Sbjct: 324 DLLEHQTELLLDFSEQLDHELILR------VDFSLIQRETGFISGLVAVLHDVTEQQKI- 376

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI-EYA 627
                           + +F++ VSHE+RTPLT++  + E + +   G   +P+    + 
Sbjct: 377 -------------DRDRKEFVSNVSHELRTPLTSVRSYIEALSD---GAWKDPKLAPRFL 420

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV------------ 675
           N      + ++ ++NDLL +S+++SG    + E V+L+E  +  +               
Sbjct: 421 NVTQEETDRMIRMINDLLSLSRLDSGTSKFNLETVNLNEFFNYVLDRFDMMLKTDNEHTG 480

Query: 676 ---------QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726
                    Q    +KR  I+    +    +  D     Q+  NI++NAI ++P GG I 
Sbjct: 481 EAKTAQPLPQPDGQKKRYSIKREITDQDLWVEIDTDKFMQVIDNIMNNAIKYSPDGGTIT 540

Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
                 +++ VIL + D G+G+   +L K    F ++  ++  +  GTGLGL ++K +V+
Sbjct: 541 ARL-FQTHDHVILSISDQGLGIPRQDLSKIFDRFYRVDKARSRKQGGTGLGLAISKEVVE 599

Query: 787 ANMGKFYIFSTPAKGTLIEIIFP 809
           A  G+ ++ S   +G+   I  P
Sbjct: 600 ALHGRIWVDSQEGRGSTFYISLP 622


>gi|197104499|ref|YP_002129876.1| sensor histidine kinase/response regulator [Phenylobacterium
           zucineum HLK1]
 gi|196477919|gb|ACG77447.1| sensor histidine kinase/response regulator [Phenylobacterium
           zucineum HLK1]
          Length = 833

 Score =  320 bits (819), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 89/362 (24%), Positives = 163/362 (45%), Gaps = 13/362 (3%)

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
             Q   + E  +D ++     G I   + +V KL G+  ED++ +     +     +   
Sbjct: 319 KSQYRLLAERVTDVMSRSTVTGQITYLSPSVVKLSGFSPEDLVGQQMLEGVHPEDQAAFL 378

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQ 566
           H   ++L              + K    + +      +         +     +++E  +
Sbjct: 379 HAHMDMLRGRRAPGTPIRYRVACKTGGWVWIEGNPSLVRDERGRPVEFVDVSRNVTERVE 438

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
            + +L+ A   AE+ ++ KSDFLA +SHEIRTPLT+I+GF+  +   +           Y
Sbjct: 439 LEARLAAAVAEAERAATVKSDFLANMSHEIRTPLTSILGFASFLDELKL----PEPAGGY 494

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
           A  +  +   +L IVND+LD SK+E+G++ +   P    E   + + L    A  K + +
Sbjct: 495 AAKVTTASRTLLAIVNDVLDFSKLEAGRLEMKPRPTDPAECARDVLDLFGPQAQAKGLEL 554

Query: 687 RTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS-NEEVILRVRDT 744
                   P + + D   ++Q+ +N++ NA+ FT SG  + +S  +      +  +V DT
Sbjct: 555 V--LEPAAPAVAMIDADRLRQVLMNLVGNAVKFTQSGS-VRLSCAYDPAERRLTCKVADT 611

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G G+    +EK  + F Q+  S      GTGLGL ++K +V+A  G+  + S P +G+  
Sbjct: 612 GPGIGAAAMEKLFQRFSQVDGSTTRAHGGTGLGLAISKGLVEAMGGRIGVESAPGRGSTF 671

Query: 805 EI 806
             
Sbjct: 672 WF 673



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 46/389 (11%), Positives = 86/389 (22%), Gaps = 21/389 (5%)

Query: 93  GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPI 152
           G +  +S  + K  G     ++G ++ +           H    + R     G    + +
Sbjct: 340 GQITYLSPSVVKLSGFSPEDLVGQQMLEGVHPEDQAAFLHAHMDMLRGRRAPGTPIRYRV 399

Query: 153 E-GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
              T  +V I+     +         F    +        +  A       +      +K
Sbjct: 400 ACKTGGWVWIEGNPSLVRDERGRPVEF--VDVSRNVTERVELEARLAAAVAEAERAATVK 457

Query: 212 KGHSSVEKEKYD-----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
               +    +       I    S    L++                 L      +L   +
Sbjct: 458 SDFLANMSHEIRTPLTSILGFASFLDELKLPEPAGGYAAKVTTASRTLLAIVNDVLDFSK 517

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
                 E            +         ++     L         A  D         +
Sbjct: 518 LEAGRLEMKPRPTDPAECARDVLDLFGPQAQAKGLELVLEPAAPAVAMIDADRLR-QVLM 576

Query: 327 DKCPIPFFVYSHG--NLFYANPSFLLLTKYKSVDDIEIAGGL--STLLDAPKLSDNNAIK 382
           +           G   L  A          K  D     G      L       D +  +
Sbjct: 577 NLVGNAVKFTQSGSVRLSCAYDPAERRLTCKVADTGPGIGAAAMEKLFQRFSQVDGSTTR 636

Query: 383 P-----VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
                 + L  S     A   R+         S      P E A   P    +       
Sbjct: 637 AHGGTGLGLAISKGLVEAMGGRIGVESAPGRGSTFWFEAPAEPAAAAPAEADEAPDVQVM 696

Query: 438 VDTRINKRKMEIEVMQL-CSILEATSDGI 465
              R+       + +++  SIL  T  G+
Sbjct: 697 AGVRVLAADDNPQNLEIVRSIL--TPLGV 723


>gi|197119422|ref|YP_002139849.1| PAS/GAF domain-containing sensor histidine kinase response
           regulator [Geobacter bemidjiensis Bem]
 gi|197088782|gb|ACH40053.1| sensor histidine kinase response regulator, PAS and GAF
           domain-containing protein [Geobacter bemidjiensis Bem]
          Length = 947

 Score =  320 bits (819), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 112/546 (20%), Positives = 202/546 (36%), Gaps = 60/546 (10%)

Query: 313 AYFDEGENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
              +        ++   PIP  ++   G +   + S+  LT Y   D   +   L     
Sbjct: 258 RSLELSREQFRRSIADAPIPVIMHAEDGEVLQVSGSWTELTGYAVEDIPTLKAWLDR--- 314

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
           A   +D +A++  +         +    +  +  +  +             Q        
Sbjct: 315 AVSAADCDAVRTAVSELCAGNRQSFRWEMSILTRDGRSRYWNISASSPGTLQDGRRF-VV 373

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATS-------------------------DGIA 466
            +  +  + R ++  ++   ++L  +    S                         D   
Sbjct: 374 CMAVDITERRESEAALQRGNLRLDLLASNASRLLESDAPQQLVDELCQKVMSYVSCDAYF 433

Query: 467 --IINREGIILSTNRAV-------SKL----FGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
             +++ +   L  N            L    +G  V     +     + +N P V +   
Sbjct: 434 NFLVDEQAGCLRLNACAGISAACAESLRYLEYGVAVCGCAARDACRIVAENIPEVPDPRT 493

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS---LTMHDIS---EWKQE 567
             + SL +        +   +    LS     +K       S        +S   E K  
Sbjct: 494 ELVKSLGITAYACHPLMSHGRVLGTLSFGTRTRKTFSEDDLSLMKAVADQVSIAMERKTT 553

Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
           +  L  AK+ AE  S  KS FLA +SHE+RTP+T ++G    + +       +    +Y 
Sbjct: 554 EENLQQAKQAAEAASRTKSQFLANMSHELRTPMTGVLG----MLDLALQSPSDLERSDYI 609

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
               RSG  +L I+ND+LD+SK+E+GK +L  +P SL   V+EA+ +    A  K I + 
Sbjct: 610 RTAYRSGRSLLQILNDILDLSKVEAGKYSLDLKPFSLKSCVAEAVDIAAPEAKRKGIELE 669

Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS---NEE--VILRV 741
              A ++P R+  D   ++Q+  N++ NA+ FT  G ++ +           E  +  RV
Sbjct: 670 LDLAQDLPARVAGDQVRLRQVLTNLVGNAVKFTERG-RVTVQVEVADKTPEGESLLRFRV 728

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            DTG+G+   +     + F QI +S      GTGLGL ++K +V    G+    S    G
Sbjct: 729 SDTGIGIPQDKRHLLFQAFSQIDDSNTRNYGGTGLGLAISKEIVQRMGGEIGFESGEGVG 788

Query: 802 TLIEII 807
           +     
Sbjct: 789 STFTFT 794



 Score = 41.2 bits (95), Expect = 0.74,   Method: Composition-based stats.
 Identities = 17/155 (10%), Positives = 42/155 (27%), Gaps = 9/155 (5%)

Query: 70  SENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM-IGMRLCD--VSDILH 126
           S   F        +    +    G + ++S    +  G     +       D  VS    
Sbjct: 263 SREQFRRSIADAPIPVIMHA-EDGEVLQVSGSWTELTGYAVEDIPTLKAWLDRAVSAADC 321

Query: 127 IDPNNHIGDLLKR-QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVH 185
                 + +L    + ++  + ++   +G + Y  I  ++       R F       +  
Sbjct: 322 DAVRTAVSELCAGNRQSFRWEMSILTRDGRSRYWNISASSPGTLQDGRRFV----VCMAV 377

Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKE 220
                 +  A  +R + +   L          +  
Sbjct: 378 DITERRESEAALQRGNLRLDLLASNASRLLESDAP 412


>gi|290892663|ref|ZP_06555655.1| histidine kinase [Listeria monocytogenes FSL J2-071]
 gi|290557723|gb|EFD91245.1| histidine kinase [Listeria monocytogenes FSL J2-071]
          Length = 591

 Score =  320 bits (819), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 83/365 (22%), Positives = 170/365 (46%), Gaps = 23/365 (6%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           +++    +L +I++    G+ +IN +  ++ TNR + ++ G    +I  KPF   ++   
Sbjct: 246 EIKQNEQRLNAIVQNLVSGVMLINVDKQVIMTNRTMYQILG--ETEITGKPFYEVIKSF- 302

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
              ++  +         Q  E I     +     S+  I+ +    +   L +HDI++ +
Sbjct: 303 --ALSQLIEGTFETKTIQQKEIILYFPREMILDASVSPILGENGEITGIILLLHDITQIR 360

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
             +N               +S+F+  VSHE++TP+TA+ GF+E + +            +
Sbjct: 361 HLENV--------------RSEFVTNVSHELKTPVTALKGFAETLLDGAM--YDEVLLKK 404

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           +   I    + +  ++ D+L +S+IE   +  + E V +DE + ++   +   A EK I 
Sbjct: 405 FLTIIKEESDRLHRLIMDILALSRIEQNPVAENVELVDVDEVIEQSARTIFEMATEKNIR 464

Query: 686 IRT-SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744
           +      +    I  D   ++QI +N+LSNAI++TP  G++ +        EVI+ V D 
Sbjct: 465 VTIPEKTSGSVMIETDRDKLQQIIINLLSNAINYTPVDGKVEVKL-IEQEAEVIIEVTDN 523

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G+   ++++  + F ++  ++     GTGLGL + K +V+   G+  + S    G+  
Sbjct: 524 GIGIPAKDIDRVFERFYRVDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGSTF 583

Query: 805 EIIFP 809
            +  P
Sbjct: 584 RVTLP 588


>gi|284802938|ref|YP_003414803.1| two-component sensor histidine kinase [Listeria monocytogenes
           08-5578]
 gi|284996079|ref|YP_003417847.1| two-component sensor histidine kinase [Listeria monocytogenes
           08-5923]
 gi|284058500|gb|ADB69441.1| two-component sensor histidine kinase [Listeria monocytogenes
           08-5578]
 gi|284061546|gb|ADB72485.1| two-component sensor histidine kinase [Listeria monocytogenes
           08-5923]
          Length = 591

 Score =  320 bits (819), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 84/369 (22%), Positives = 173/369 (46%), Gaps = 31/369 (8%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           +++    +L +I++    G+ +IN +  ++ TNR + ++ G    +I  KPF   ++   
Sbjct: 246 EIKQNEQRLNAIVQNLVSGVMLINVDKQVIMTNRTMYQILG--ETEITGKPFYEVIKSFA 303

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISE 563
            S +        + + +   +K  +     E +L   +              L +HDI++
Sbjct: 304 LSQLIEA-----TFETKTIQQKEIILYFPREMILDASVSPILGENGEITGIILLLHDITQ 358

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            +  +N               +S+F+  VSHE++TP+TA+ GF+E + +   G + +   
Sbjct: 359 IRHLENV--------------RSEFVTNVSHELKTPVTALKGFAETLLD---GAMYDEML 401

Query: 624 -IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             ++   I    + +  ++ D+L +S+IE   +  + E V +DE + ++   +   A EK
Sbjct: 402 LKKFLTIIKEESDRLHRLIMDILALSRIEQNPVPENVELVEVDEVIEQSARTIFEMATEK 461

Query: 683 RILIRTSFANNIPRI--LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
            I +       IP +    D   ++QI +N+LSNAI++TP  G++ +        EVI+ 
Sbjct: 462 NIQVII-PEKTIPSVTIETDRDKLQQILINLLSNAINYTPVDGKVEVKL-IEQEAEVIIE 519

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V D G+G+   ++++  + F ++  ++     GTGLGL + K +V+   G+  + S    
Sbjct: 520 VTDNGIGIPAKDIDRVFERFYRVDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEV 579

Query: 801 GTLIEIIFP 809
           G+   +  P
Sbjct: 580 GSTFRVTLP 588


>gi|253701742|ref|YP_003022931.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           M21]
 gi|251776592|gb|ACT19173.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           M21]
          Length = 521

 Score =  320 bits (819), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 94/488 (19%), Positives = 186/488 (38%), Gaps = 26/488 (5%)

Query: 334 FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393
            +   GN+   N     +T+Y+  + I      S L    +L      + + + RS  + 
Sbjct: 41  LLDPQGNISSWNAGAEQITRYRGSEVIGK--HFSLLHPKEELRSGAPERELAIARSLGSL 98

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
                RL        +            +Q            +D + R +   +      
Sbjct: 99  DLQGWRL----KKDGSRFWAGITLTAIYDQEENLAGFALFAHDDSEKRASDEALLKSRNM 154

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
           L  + E   DGI +++  G+I  TN+     FGY  E++L +   + + +        + 
Sbjct: 155 LERLFETAPDGIVVVDGNGVIRRTNQQAEITFGYMREEMLGQRIELLIPERYHKRHRQHR 214

Query: 514 TEILSLDLRQ--TLEKITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKN 569
               +    +   +     G  K+   + + I++  +           + DI+  +Q + 
Sbjct: 215 RNYFADPRARKMGIGLELYGRNKDGHEIPVDIMLNPIETPDGTWVFAVIRDITSQRQGEA 274

Query: 570 -------KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
                   L +  +     +     F   VSH++R PL  IIGF + + N +   + + +
Sbjct: 275 KILELNLALRNQLEQLGASNRELESFSYSVSHDLRAPLRHIIGFVD-LLNAKAANVLDEK 333

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
              Y   I  + N +  +++DLL  S++  G+  +    V L   V E ++ ++  + E+
Sbjct: 334 SRHYLEVISDAANKMGLLIDDLLAFSRM--GRSEMMKGWVDLGLLVREIVNDLESDSKER 391

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST-THTSNEEVILRV 741
              I+   A  +P +L D   ++Q+ +N++ NA+ FT S  +  I+       +E  + V
Sbjct: 392 --EIQWDIAP-LPIVLGDAAMLRQVLINLVGNAVKFTRSREKARIAIGAIDREQETEIFV 448

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
           RD GVG       K    F ++        EGTG+GL + + +V  + G+ +       G
Sbjct: 449 RDNGVGFDEAYASKLFGLFQRLHA--NEEFEGTGVGLAIVQRIVLRHGGRVWAEGEVDGG 506

Query: 802 TLIEIIFP 809
                  P
Sbjct: 507 ATFWFSLP 514



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/251 (8%), Positives = 57/251 (22%), Gaps = 12/251 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D  G +   +    +       ++IG     +     +       +L   ++       
Sbjct: 42  LDPQGNISSWNAGAEQITRYRGSEVIGKHFSLLHPKEELRSGAPERELAIARSLGSLDLQ 101

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
            W ++         +    IY +    +GF  F   H +           +       L 
Sbjct: 102 GWRLKKDGSRFWAGITLTAIYDQEENLAGFALFA--HDDSEKRASDEALLKSRNMLERLF 159

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHL-------RMKNKVSSLTEYYAHKDDVLKTEK-YP 260
           E       V      I                  +  ++  L     HK         + 
Sbjct: 160 ETAPDGIVVVDGNGVIRRTNQQAEITFGYMREEMLGQRIELLIPERYHKRHRQHRRNYFA 219

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL--SHRNHPSLSAYFDEG 318
              + +  +  +      + ++         ++         +     +     A   E 
Sbjct: 220 DPRARKMGIGLELYGRNKDGHEIPVDIMLNPIETPDGTWVFAVIRDITSQRQGEAKILEL 279

Query: 319 ENLTPETVDKC 329
                  +++ 
Sbjct: 280 NLALRNQLEQL 290



 Score = 39.6 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 29/268 (10%), Positives = 70/268 (26%), Gaps = 18/268 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D +G ++  +++   T G    +M+G R+  +    +     H      R+N +     
Sbjct: 169 VDGNGVIRRTNQQAEITFGYMREEMLGQRIELLIPERY-----HKRHRQHRRNYFADPRA 223

Query: 149 L--------WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
                    +        +P+D+   PI + +  +     F ++          A    L
Sbjct: 224 RKMGIGLELYGRNKDGHEIPVDIMLNPIETPDGTWV----FAVIRDITSQRQGEAKILEL 279

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
           +    +  E     +   +      S     P   +   V  L    A+  D        
Sbjct: 280 NLALRNQLEQLGASNRELESFSYSVSHDLRAPLRHIIGFVDLLNAKAANVLDEKSRHYLE 339

Query: 261 LLTSEESSLPEQ-EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
           +++   + +    +D    +    ++                     +       +D   
Sbjct: 340 VISDAANKMGLLIDDLLAFSRMGRSEMMKGWVDLGLLVREIVNDLESDSKEREIQWDIAP 399

Query: 320 NLTPETVDKCPIPFFVYSHGNLFYANPS 347
                          +   GN      S
Sbjct: 400 LPIVLGDAAMLRQVLINLVGNAVKFTRS 427


>gi|227508144|ref|ZP_03938193.1| histidine kinase [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227511167|ref|ZP_03941216.1| histidine kinase [Lactobacillus buchneri ATCC 11577]
 gi|227085649|gb|EEI20961.1| histidine kinase [Lactobacillus buchneri ATCC 11577]
 gi|227192373|gb|EEI72440.1| histidine kinase [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 617

 Score =  320 bits (819), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 80/368 (21%), Positives = 160/368 (43%), Gaps = 35/368 (9%)

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
             +L S+L   +DG+   +R G ++  N   +          + K     L+      + 
Sbjct: 263 RRRLDSVLANMTDGVLATDRRGNVIIINETAASFLDLDENQAMGKSILDVLDIRKDYSLR 322

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLL---SLRIIIKKLPFSSCYSLTMHDISEWKQE 567
             L +          E I   S+ +  L+      +I ++  F S     + DI+E ++ 
Sbjct: 323 DLLEK--------PDELILDFSSDDHSLILHAHFSLIQRESGFISGLVCVLRDITEQQRI 374

Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI-EY 626
                            +  F++ VSHE+RTPLT++  + E + +   G   +P+   ++
Sbjct: 375 DQD--------------RKQFVSNVSHELRTPLTSVRSYIEALHD---GAWKDPKLAPKF 417

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN-----E 681
                   + ++ ++NDLL +S+++SG   +  E V+++E  +  ++   +        E
Sbjct: 418 LKVTQDETDRMIRMINDLLTLSRMDSGTQKMEVELVNINELFNYVLNRFDMILKKDEHPE 477

Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
           K   I+  F      +  D     Q+  N+++NAI ++P GG I     + +  +VIL V
Sbjct: 478 KMYTIKRYFTKRDLWVDLDTDRFTQVLDNLMNNAIKYSPDGGVITCRL-YETRNKVILSV 536

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            D G+G+   ++      F ++  ++  +  G+GLGL ++K +V+A  G+ +  S   KG
Sbjct: 537 SDQGLGIPRKDIPHIFDRFYRVDKARSRQQGGSGLGLAISKEVVEALHGQLWAESVEGKG 596

Query: 802 TLIEIIFP 809
           +   I  P
Sbjct: 597 STFYIALP 604


>gi|73749306|ref|YP_308545.1| sensor histidine kinase/response regulator [Dehalococcoides sp.
           CBDB1]
 gi|73661022|emb|CAI83629.1| sensor histidine kinase/response regulator [Dehalococcoides sp.
           CBDB1]
          Length = 852

 Score =  320 bits (819), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 102/516 (19%), Positives = 197/516 (38%), Gaps = 43/516 (8%)

Query: 313 AYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSV---DDIEIAGGLST 368
             F       P  + +      V+     L   NP+   +T   +     ++     LS 
Sbjct: 230 KLFKTIPFAYPLILQQMNDGILVFDKSNRLLETNPAACRMTGLDNTMVGQELRDLCELSP 289

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
           LL+              L  +D   +         +   ++            N+  + +
Sbjct: 290 LLE-------------CLSITDFGHLDME---SATRVKGKSYQ---LDKQPLFNKQKQQV 330

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
                  +    +   ++++    Q  +++E  +DGI I+ + G+++  N  + +L GY 
Sbjct: 331 GWLATIRDISQRKQTDQELKERKEQYFTLVEHGNDGIIIV-QHGLVVYANSKMKELSGYL 389

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ-TLEKITLGSTKEEKLLSLRIIIKK 547
           +EDIL KPF  F+      ++  +  + +         E   +    +E  + +   + +
Sbjct: 390 MEDILEKPFVQFISPEQRELIEKHYQKRIEGQKSSGRYEACLINKNGQEVYVEISASLIE 449

Query: 548 LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS--HKSDFLARVSHEIRTPLTAIIG 605
                     + D++  KQ + +    +  AE  S      +  A ++HEI  PLT +IG
Sbjct: 450 YDGQIADMAIIRDLTAHKQAELENQRLRDKAEMASRLAAIGEMAAGIAHEINNPLTGVIG 509

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
           FSE++  +   P      +     I+     V++IV  LL  ++    +       +++ 
Sbjct: 510 FSELLAAREDLP---EDIMADLQVINHGSQRVVEIVRRLLTFAR----QNKPVKTRLNVH 562

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT---PSG 722
           E +   +           I +   +  N+P I AD   ++Q+ LN++ NA         G
Sbjct: 563 ELIDNTLEFRSYVFKTANIEVIRKYDQNLPWITADPGQLQQVFLNLVINAEQAMRKAHDG 622

Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
           G++ I+TT   +    + + D G GMT     K  +PF      +     GTGLGL LA 
Sbjct: 623 GKLTITTTREDS-FFSICIADDGPGMTPEVKAKIFQPFFTTKGPKD----GTGLGLSLAM 677

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
           A++  + G   + S   +GT   I  P+ D+    D
Sbjct: 678 AIILDHHGTIEVESEYGRGTAFTINLPM-DSPETED 712



 Score = 43.9 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 23/202 (11%), Positives = 49/202 (24%), Gaps = 13/202 (6%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151
           HG +   + ++ +  G     ++             +                G+     
Sbjct: 372 HGLVVYANSKMKELSGYLMEDILEKPFVQFISPEQRELIEKHYQKRIEGQKSSGRYEACL 431

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
           I      V ++++A  I   + + +      I+             +RL  K      + 
Sbjct: 432 INKNGQEVYVEISASLI-EYDGQIADM---AIIRDLTAHKQAELENQRLRDKAEMASRLA 487

Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271
                 E          +P         V   +E  A ++D+ +     L      S   
Sbjct: 488 AI---GEMAAGIAHEINNPLTG------VIGFSELLAAREDLPEDIMADLQVINHGSQRV 538

Query: 272 QEDFHTINLNQYTKKQYFGTLQ 293
            E    +       K     L 
Sbjct: 539 VEIVRRLLTFARQNKPVKTRLN 560


>gi|217971382|ref|YP_002356133.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS223]
 gi|217496517|gb|ACK44710.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS223]
          Length = 1191

 Score =  320 bits (819), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 105/484 (21%), Positives = 194/484 (40%), Gaps = 20/484 (4%)

Query: 335 VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394
           V     +    PS   +   +S + +  +    TL   P      A              
Sbjct: 463 VLEVNRIIDEVPSASAIFAMESSNYLLKSILNKTLTVIPPDELQMAENRWRR-------- 514

Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
             +A      W        T +           +             + K++++ ++  +
Sbjct: 515 --NALPARQSWKDYEYTIYTIVIASTIMILISIIWALYTHTHYRKRLLAKKELDQQLKFM 572

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP-FTVFLEQNTPSVMNHYL 513
            SI++A    I + N +  +   N +   +F    ED+L K              ++   
Sbjct: 573 QSIVDAIPHPIYVRNEQHELTMCNESYLSVFNVTREDVLNKTTVEGANRSREAPDIDREY 632

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK-KLPFSSCYSLTMHDISEWKQEKNKLS 572
            ++L   +    +++     ++  +         +            D+S+  +   +L 
Sbjct: 633 RQVLEDSIPIFRDRVLHVDERKYNIYHWFKSYSDEAGNIKGIIGGWIDVSDRVKLVEELE 692

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
           +AK+IA+  S  KS FLA +SHEIRTP+ AIIG  E+   +      +   I        
Sbjct: 693 YAKEIADSASQAKSTFLATMSHEIRTPMNAIIGMLELALKRTKSQHFD---INSIKVAYD 749

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
           S N +L+++ D+LDI++IE+G++ L     +L    +  + +    A EK I ++  F  
Sbjct: 750 SANGLLELIGDILDIARIEAGQLYLSPVRSNLKNITTSVVRVFDGLAREKGISLQLDFTP 809

Query: 693 NIP-RILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDTGVGM 748
            +   IL D   +KQI  N++ NAI FT +G    +I   T   +   ++  V DTG+G+
Sbjct: 810 ELTKDILVDPIRIKQILSNLIGNAIKFTHNGSVKVKIQSKTLVHAKRTLLFTVTDTGIGI 869

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           +  + +K   PF Q   +      GTGLGL +  ++ +   G   + S+P +GT I +I 
Sbjct: 870 SEEDQQKLFTPFSQAHGANN-TYGGTGLGLMICHSLCEMMGGTLTLESSPNQGTKISMIL 928

Query: 809 PLYD 812
            L +
Sbjct: 929 TLPE 932


>gi|46908672|ref|YP_015061.1| histidine kinase [Listeria monocytogenes serotype 4b str. F2365]
 gi|47092786|ref|ZP_00230571.1| histidine kinase [Listeria monocytogenes str. 4b H7858]
 gi|226225048|ref|YP_002759155.1| two-component sensor histidine kinase [Listeria monocytogenes
           Clip81459]
 gi|254825378|ref|ZP_05230379.1| histidine kinase [Listeria monocytogenes FSL J1-194]
 gi|254932259|ref|ZP_05265618.1| histidine kinase [Listeria monocytogenes HPB2262]
 gi|46881944|gb|AAT05238.1| histidine kinase [Listeria monocytogenes serotype 4b str. F2365]
 gi|47018874|gb|EAL09622.1| histidine kinase [Listeria monocytogenes str. 4b H7858]
 gi|225877510|emb|CAS06224.1| two-component sensor histidine kinase [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|293583816|gb|EFF95848.1| histidine kinase [Listeria monocytogenes HPB2262]
 gi|293594621|gb|EFG02382.1| histidine kinase [Listeria monocytogenes FSL J1-194]
 gi|328465108|gb|EGF36376.1| two-component sensor histidine kinase [Listeria monocytogenes 1816]
 gi|332312930|gb|EGJ26025.1| Histidine kinase [Listeria monocytogenes str. Scott A]
          Length = 591

 Score =  320 bits (819), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 82/367 (22%), Positives = 169/367 (46%), Gaps = 27/367 (7%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           +++    +L +I++    G+ +IN +  ++ TNR + ++ G    +I  KPF   ++   
Sbjct: 246 EIKQNEQRLNAIVQNLVSGVMLINVDKQVIMTNRTMYQILG--ETEITGKPFYEVIKSFA 303

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISE 563
            S +        + + +   +K  +     E +L   +              L +HDI++
Sbjct: 304 LSQLIEA-----TFETKTIQQKEIILYFPREMILDASVSPILGENGEITGIILLLHDITQ 358

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            +  +N               +S+F+  VSHE++TP+TA+ GF+E + +           
Sbjct: 359 IRHLENV--------------RSEFVTNVSHELKTPVTALKGFAETLLDGAM--YDEVLL 402

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            ++   I    + +  ++ D+L +S+IE   +  + E V +DE + ++   +   A EK 
Sbjct: 403 KKFLTIIKEESDRLHRLIMDILALSRIEQNPVAENVELVDVDEVIEQSARTIFEMATEKN 462

Query: 684 ILIRT-SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           I +      +    I  D   ++QI +N+LSNAI++TP  G++ +        EVI+ V 
Sbjct: 463 IRVTIPEKTSASVMIETDRDKLQQIVINLLSNAINYTPVDGKVEVKL-IEQEAEVIIEVT 521

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G+G+   ++++  + F ++  ++     GTGLGL + K +V+   G+  + S    G+
Sbjct: 522 DNGIGIPAKDIDRVFERFYRVDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGS 581

Query: 803 LIEIIFP 809
              +  P
Sbjct: 582 TFRVTLP 588


>gi|186683853|ref|YP_001867049.1| multi-sensor signal transduction histidine kinase [Nostoc
           punctiforme PCC 73102]
 gi|186466305|gb|ACC82106.1| multi-sensor signal transduction histidine kinase [Nostoc
           punctiforme PCC 73102]
          Length = 648

 Score =  320 bits (819), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 87/412 (21%), Positives = 180/412 (43%), Gaps = 28/412 (6%)

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINK--RKMEIEVMQLCSILEATSDGIAIINREGI 473
           I      +  E +       E ++    +   ++  E  +L +++   +DG  +I+    
Sbjct: 238 IDLPLGGELGELILSFNEMAERLERYEEQNIEELTAEKAKLETLVSTIADGAVLIDNNMQ 297

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
           ++  N    ++FG+   D++       L       +   L E+ + +      +I +   
Sbjct: 298 VILVNPTARRIFGWETADVVGCNVLHHLPPAVQMEITGPLYEMAAGECESAEFRIFINQP 357

Query: 534 KEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
               +  L   +  +   S    ++T+ DI+                 + +  KS F++ 
Sbjct: 358 TPRTIRILLTTVLNVQRESIKGIAITVQDITR--------------EVELNDAKSQFISN 403

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           VSHE+RTPL  I  + E + +     LG     E+   ++   + +  +VND+LD+SK+E
Sbjct: 404 VSHELRTPLFNIKTYIETLHD-YGEDLGLEERQEFLQTVNHETDRLTRLVNDVLDLSKLE 462

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
           SG+   +F+ V L +A+ + +   QL A +K + +      N+P ++ +   + Q+  N+
Sbjct: 463 SGR-QYNFDGVDLAQAIEQTLRTYQLNAKDKGVELLQEVDTNLPLVMGNYDLLVQVFGNL 521

Query: 712 LSNAIHFTPSGGQIIIST-------THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764
           + NA+ FT +GG++ I          H+ +  V + + DTG+G+   +     + F ++ 
Sbjct: 522 IGNALKFTKAGGKVAIRAYQLDFKPNHSQSSPVRIEISDTGIGIATEDQHSIFERFFRVE 581

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           N +    EGTGLGL + + ++D +  K ++ S    GT        ++   P
Sbjct: 582 N-RVHTLEGTGLGLSIVRNIIDRHRSKVHLVSEVGIGTTFWFDLAAFEEKAP 632


>gi|222529475|ref|YP_002573357.1| histidine kinase [Caldicellulosiruptor bescii DSM 6725]
 gi|222456322|gb|ACM60584.1| histidine kinase [Caldicellulosiruptor bescii DSM 6725]
          Length = 575

 Score =  320 bits (819), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 89/367 (24%), Positives = 165/367 (44%), Gaps = 27/367 (7%)

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
             +L S+L++   GI   +    IL+ NR    +              V         + 
Sbjct: 235 RKRLTSLLDSLDIGIIFFDMNKRILTFNRGAENIL--------ETNLKVGFSLLECVRVY 286

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570
                +   D+ +  E     + K + L   +  I          L + DI+  K+ +  
Sbjct: 287 ELFEFLFQQDINEK-EIEISINNKTKFLKINKKKISYEDNKEGILLILSDITFLKKLE-- 343

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
                         +SDF+A VSHE++TPLT+I GF E +K+           I++ N I
Sbjct: 344 ------------RIRSDFVANVSHELKTPLTSIKGFVETLKDGAID--DKDVAIKFLNII 389

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
           +     ++ ++NDLL +S+IE+  M +  E V + E V E I L+++ A +K I +    
Sbjct: 390 EVEVERLVRLINDLLYLSEIENAAMPILEEKVVVKEVVLEIIELLKIKAEKKNIQLDIKV 449

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
              +  +      +KQI +N++ NAI +    G++ ++     N  ++++V+DTG+G+  
Sbjct: 450 QEGL-EMNIYRDWLKQIFINLIDNAIVYNKENGKVWVTVEKLDN-LIVIKVKDTGIGIPE 507

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            E+E+  + F ++   +  +  GTGLGL + K +V+   GK ++ S    G+   +  P+
Sbjct: 508 KEIERIFERFYRVDKGRSRKFGGTGLGLSIVKHIVELYGGKVWVESQEGIGSEFTVTIPI 567

Query: 811 YDTSHPH 817
              + PH
Sbjct: 568 VKKADPH 574


>gi|251796378|ref|YP_003011109.1| histidine kinase [Paenibacillus sp. JDR-2]
 gi|247544004|gb|ACT01023.1| histidine kinase [Paenibacillus sp. JDR-2]
          Length = 486

 Score =  320 bits (819), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 75/375 (20%), Positives = 151/375 (40%), Gaps = 34/375 (9%)

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
           +  E   L SIL +  D +   + +G ++ TN     L     +  +   +         
Sbjct: 131 LNHEKEHLSSILRSMGDAVITFDADGRVILTNPPGHMLVSRWSDLEMDIDWEEEEAPPFH 190

Query: 507 S---VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHD 560
                +      ++      T +   + +          +++  L            + +
Sbjct: 191 DVPGPLRDTFQRVMHSGRDCTNKVQVINNV-------WSVVMAPLQNEGVVRGAVAVIRN 243

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           ++E  + +                + DF+A VSHEIRTPL+ + G+SE + +        
Sbjct: 244 VTEEHKLE--------------KLRRDFVANVSHEIRTPLSMLQGYSEALLDDIVA--SP 287

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
               E    I      +  +VND LD++++E+G + L  +   L   +       Q+YA 
Sbjct: 288 EERKELVQVIYDESLRMGRLVNDFLDMARMEAGHVELSLQEFDLRNVIRRVHRKFQVYAK 347

Query: 681 EKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIII---STTHTSNEE 736
           E+ + +     +    +  AD   ++Q+  N++ NA+  TP+G  I I   + T  + + 
Sbjct: 348 ERNVSLNADLPDTPLAVHEADEDRIEQVLTNLMDNALRHTPAGKSIKIAGQTATINNLKF 407

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGEGTGLGLPLAKAMVDANMGKFYIF 795
           V L V D G G+ + ++    + F +   +++     GTGLGL + K ++  + G+  + 
Sbjct: 408 VKLIVADEGQGIPSEDVPYIFERFYKADKARKRGASGGTGLGLAIVKNIITQHNGRIEVD 467

Query: 796 STPAKGTLIEIIFPL 810
           S   KGT   ++ P+
Sbjct: 468 SVLGKGTTFTLLLPV 482


>gi|192288515|ref|YP_001989120.1| PAS/PAC sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris TIE-1]
 gi|192282264|gb|ACE98644.1| PAS/PAC sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris TIE-1]
          Length = 837

 Score =  320 bits (819), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 135/710 (19%), Positives = 251/710 (35%), Gaps = 43/710 (6%)

Query: 121 VSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN----REFS 176
           +     +  ++ +  LL +   +  +        T+    I+     +  +     RE S
Sbjct: 155 LPPEPALQMDHAVDALLDKGEGFLLQLV------TSNGRSIEAMGRAVGGQAVVRIRELS 208

Query: 177 GFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM 236
           G R        R   D     K L ++   L             +    +          
Sbjct: 209 GVR--------RELADMTRRFKALQEETEMLRGFATAAPWPIWTRRSDGTLSFANAAYAR 260

Query: 237 KNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS 296
               S   +      ++L +     L        E      I +    +      L+ + 
Sbjct: 261 ATDASDAADAIGRNLELLDSGDRAALARALGDGYEYSGRLPIVVGGERRYYDVRALKVSG 320

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYK 355
             +   +      +L A  +   +    T+D+      V+     L + N S+  L    
Sbjct: 321 GSAGIAVDATETAALGAALERMADAHRRTLDQLSSGVAVFDAQRRLSFYNDSYRKLWD-- 378

Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA---RLHTIQWNRENSLA 412
                     L  +       D+  +  +   R         A   +LH      E    
Sbjct: 379 ----------LDRIFLDSHPDDSTVLDRLRAERKLPEERDFKAWKNKLHEAYRAVEAEKD 428

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL----CSILEATSDGIAII 468
           + ++P  +A          G      D       ++     L       L+  S+ +A+ 
Sbjct: 429 VWYLPDGRAVSIVTTPNPEGGVTYLFDDVTESLDLKRRYGGLIDVQRETLDNLSEAVAVF 488

Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH-YLTEILSLDLRQTLEK 527
              G     N   ++++    E +  +P    +E+    + +     + L   +    ++
Sbjct: 489 GSNGCAQLFNPPFARMWNLSAEALQSQPHIEAIEEWCRPLFDDDVFWQALRGAITGIDDR 548

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
             +    E K  S+              LT  DI++ +  +  L    +  E     K D
Sbjct: 549 RHVLLKIERKDGSVLACKTMPLPDGATMLTFQDITDTENVERALRERNEALETADRIKID 608

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           F+  VS+E+R+PLT IIGF+  + +   GPL   +  EY NYI  S N ++ I+N++LD+
Sbjct: 609 FVHHVSYELRSPLTTIIGFAHFLSDSSTGPLT-EKQAEYVNYITTSTNALMAIINNILDL 667

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707
           + I++G M L+  P+ + +A+  A   +Q      +I ++      I   + D R V Q+
Sbjct: 668 ASIDAGAMTLNLGPIDIRKAIDAAAEGIQDRLARDQIALQIDVDPAIESFVGDERRVVQV 727

Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
             N+L+NAI F+PS G + ++        V   V D+G G+     EK    F    + Q
Sbjct: 728 LYNLLANAIDFSPSQGTVRLTVR-RGETRVAFTVTDSGPGIAPAFKEKMFDLFE--SDPQ 784

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
             R  G GLGL L ++ V+ + GK  + S   +GT +   FP+   +  H
Sbjct: 785 GSRHRGAGLGLSLVRSFVELHGGKVLVESAVGRGTSVTCEFPIEPAAQRH 834



 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 48/385 (12%), Positives = 101/385 (26%), Gaps = 39/385 (10%)

Query: 86  TWNIDAHGYLKEISEEL-PKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144
            W   + G L   +      T  + A   IG  L ++ D         +   L     + 
Sbjct: 242 IWTRRSDGTLSFANAAYARATDASDAADAIGRNL-ELLDSGD---RAALARALGDGYEYS 297

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
           G     PI         D+ AL +        G  G  +           A  +R+    
Sbjct: 298 G---RLPIVVGGERRYYDVRALKVSG------GSAGIAV--DATETAALGAALERMADAH 346

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
               +      +V   +  +          ++ +      + +     VL   +      
Sbjct: 347 RRTLDQLSSGVAVFDAQRRLSFYNDSY--RKLWDLDRIFLDSHPDDSTVLDRLRAERKLP 404

Query: 265 EESSLPE-----QEDFHTINLNQYTKKQ-------YFGTLQNNSKESFEYLSHRNHPSLS 312
           EE           E +  +   +               T       ++ +        L 
Sbjct: 405 EERDFKAWKNKLHEAYRAVEAEKDVWYLPDGRAVSIVTTPNPEGGVTYLFDDVTESLDLK 464

Query: 313 AYFDEGENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
             +    ++  ET+D       V+ S+G     NP F  +    S + ++    +  + +
Sbjct: 465 RRYGGLIDVQRETLDNLSEAVAVFGSNGCAQLFNPPFARMWNL-SAEALQSQPHIEAIEE 523

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
             +   ++ +    L  +          L  I+    + LA   +P              
Sbjct: 524 WCRPLFDDDVFWQALRGAITGIDDRRHVLLKIERKDGSVLACKTMPLPDGA-------TM 576

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCS 456
               +  DT   +R +      L +
Sbjct: 577 LTFQDITDTENVERALRERNEALET 601



 Score = 41.9 bits (97), Expect = 0.44,   Method: Composition-based stats.
 Identities = 36/351 (10%), Positives = 77/351 (21%), Gaps = 25/351 (7%)

Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
            +  T      +   ++        +  L    + +    +   +   F  +S       
Sbjct: 21  GLAGTAVMVASSPARAADDHLAAITSSLLLDLNRHEMMTLIIALAALGFSVMSAIMLVRT 80

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
                  E      +              L +A P  L+              G + L  
Sbjct: 81  RQRAVAREAGLRADLQGLQA--ESDRFQALLFAEPQVLISWAAGDSR--PQVSGDTALFL 136

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASAR--LHTIQWNRENSLAMTFI----------PFE 419
             +       + +          A      +  +    E  L                  
Sbjct: 137 PLETQSRQPQRVLAFGTWLPPEPALQMDHAVDALLDKGEGFLLQLVTSNGRSIEAMGRAV 196

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
                      +G+  E  D     + ++ E   L     A    I     +G +   N 
Sbjct: 197 GGQAVVRIRELSGVRRELADMTRRFKALQEETEMLRGFATAAPWPIWTRRSDGTLSFANA 256

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
           A ++                 L+    + +   L      D  +   ++ +    E +  
Sbjct: 257 AYARATDASDAADAIGRNLELLDSGDRAALARAL-----GDGYEYSGRLPIVVGGERRYY 311

Query: 540 SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
            +R     L  S   +    D +E       L        +     S  +A
Sbjct: 312 DVRA----LKVSGGSAGIAVDATETAALGAALERMADAHRRTLDQLSSGVA 358


>gi|170741016|ref|YP_001769671.1| integral membrane sensor hybrid histidine kinase [Methylobacterium
           sp. 4-46]
 gi|168195290|gb|ACA17237.1| integral membrane sensor hybrid histidine kinase [Methylobacterium
           sp. 4-46]
          Length = 927

 Score =  319 bits (818), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 97/427 (22%), Positives = 183/427 (42%), Gaps = 9/427 (2%)

Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
            +     + ++    E    +       A           +     +     R+ E + +
Sbjct: 212 LVPLRQVVKSLSAISEGRFDVPLPETRDAEIRGIVRVIALLRTAQAERERLTREAEHQRL 271

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLF-GYPVEDILRKPFTVFLEQNTPSVMNH 511
            L   +    +G A+ +R+  ++  N   S++  G      +  PF   ++Q        
Sbjct: 272 ILEDAVACMQEGFALYDRDDRLVMANARYSEMLMGQSAAAAMGLPFETLIQQVAARRDES 331

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL----PFSSCYSLTMHDISEWKQE 567
                L  D            +       +R    ++             + DI++ KQ 
Sbjct: 332 DAEADLDHDAWIAQRLAEHRRSGSTTETRVRGRWLQIAKHRTHDGGTVTLVMDITDLKQR 391

Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
           + +L  A+  AE+ +  KS+FLA +SHE+RTPL AIIG+S++++        +    +  
Sbjct: 392 EIELDQARAEAERANQVKSEFLANMSHELRTPLNAIIGYSQMLREDAADDGNDGAVAD-L 450

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
             I+ +G  +LD++ND+LD+SKIE+GKM++  E +++ E + +   L++  A      + 
Sbjct: 451 TKIEGAGKHLLDLINDILDLSKIEAGKMDVFLEEINIPELLEDVRLLIEPVAARNDNRLV 510

Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN--EEVILRVRDTG 745
            + A    R++ D+  +KQ  LN+LSNA  FT  GG + +S     +    +   V DTG
Sbjct: 511 VACAAGASRMVTDVTKLKQSLLNLLSNAAKFT-KGGLLTLSVDPDPDRAGNLCFAVSDTG 569

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G++  ++ +  + F Q  NS   +  GTGLGL + ++      G   + S    G+   
Sbjct: 570 IGLSPEQVGRLFQAFQQADNSTTRKFGGTGLGLAITRSFARMLGGDIAVTSALGAGSTFV 629

Query: 806 IIFPLYD 812
           I  P + 
Sbjct: 630 ITLPAHP 636



 Score = 47.7 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 29/277 (10%), Positives = 69/277 (24%), Gaps = 16/277 (5%)

Query: 179 RGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKN 238
           R  G   V        A+ + L +    L         +   +    ++ S         
Sbjct: 139 RVIGNSLVAEARRHGIAVDRILAQLDDQLSGQAHSARDLVLARTMTATRVSFIVVGLAIV 198

Query: 239 KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE 298
               LT    H   V   +    L++      +     T +       +    L+     
Sbjct: 199 FGIGLTALVLHSILVPLRQVVKSLSAISEGRFDVPLPETRDAEIRGIVRVIALLR----- 253

Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSV 357
                +      L+   +    +  + V      F +Y     L  AN  +  +   +S 
Sbjct: 254 ----TAQAERERLTREAEHQRLILEDAVACMQEGFALYDRDDRLVMANARYSEMLMGQSA 309

Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE-NSLAMTFI 416
                     TL+       + +     L          + RL   + +       +   
Sbjct: 310 AAAMGLP-FETLIQQVAARRDESDAEADL----DHDAWIAQRLAEHRRSGSTTETRVRGR 364

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
             + A     +     +  +  D +  + +++    +
Sbjct: 365 WLQIAKHRTHDGGTVTLVMDITDLKQREIELDQARAE 401



 Score = 39.2 bits (90), Expect = 3.1,   Method: Composition-based stats.
 Identities = 24/242 (9%), Positives = 64/242 (26%), Gaps = 4/242 (1%)

Query: 90  DAHGYLKEISEELPKTI-GNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           D    L   +    + + G  A   +G+    +   +    +    +     + W  +  
Sbjct: 288 DRDDRLVMANARYSEMLMGQSAAAAMGLPFETLIQQVAARRDESDAEADLDHDAWIAQRL 347

Query: 149 L-WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                 G+     +    L I +++R   G     +V              +   +    
Sbjct: 348 AEHRRSGSTTETRVRGRWLQI-AKHRTHDG-GTVTLVMDITDLKQREIELDQARAEAERA 405

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
           +++K    +    +              ++   +      A  D          L    +
Sbjct: 406 NQVKSEFLANMSHELRTPLNAIIGYSQMLREDAADDGNDGAVADLTKIEGAGKHLLDLIN 465

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
            + +        ++ + ++     L  + +   E ++ RN   L      G +     V 
Sbjct: 466 DILDLSKIEAGKMDVFLEEINIPELLEDVRLLIEPVAARNDNRLVVACAAGASRMVTDVT 525

Query: 328 KC 329
           K 
Sbjct: 526 KL 527


>gi|172056400|ref|YP_001812860.1| integral membrane sensor signal transduction histidine kinase
           [Exiguobacterium sibiricum 255-15]
 gi|171988921|gb|ACB59843.1| integral membrane sensor signal transduction histidine kinase
           [Exiguobacterium sibiricum 255-15]
          Length = 845

 Score =  319 bits (818), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 113/622 (18%), Positives = 233/622 (37%), Gaps = 59/622 (9%)

Query: 220 EKYDIFSQQSP---PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFH 276
           E     S+  P       R  +++  L   +          K  +    E    + E+  
Sbjct: 248 EDNRKLSRNEPIEMDVMERRADEIGMLRSSFNQMAVTTGLHKEEMQNKNEELQAQSEELL 307

Query: 277 TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI----- 331
                  ++++        +K++ E L  R+  + +    E     P  V K        
Sbjct: 308 AQQEELQSQQEELEEAYQATKQNEEKLKMRSELTEALAVRETVESYPAIVQKMLDITSSE 367

Query: 332 --PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389
                +Y  G    A  + + + + +S+         ++LL+  +L          + R+
Sbjct: 368 YGALLLYDDGVYIGATTNGMKIQQVQSL-----LDDENSLLNRMRLGTKVVQSEKRVSRT 422

Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD-------TRI 442
           + T  + S     +     ++  +    +    Q P    Q     E             
Sbjct: 423 NDTPYSFSTYEVALPIYDPSTHQLMAAVYMVRYQSPYQSQQLADMREFSQQMTLSLLRTR 482

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA-VSKLFGYPVEDILRKPFT--- 498
           +  +M+ E  +   +L++  + I  +      L  NR     +     E    +  +   
Sbjct: 483 SYDEMKQEKQKTEQVLDSIREAIIYLEDGNDELYVNRPLFELIPELQSEFTRDRTLSSAS 542

Query: 499 -----VFLEQNTPSVMNHYLTEILSLDL-RQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
                +    +     N YL  I S ++    ++    G++       L +  +++    
Sbjct: 543 YVIEVMRNIVDDVERFNDYLDLIRSGEVSPDKVQFDVRGNSA-----HLEVYAERIDIEG 597

Query: 553 CY---SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
            +    L + DI+                 +    K++ ++ VSHE+RTPL++I GF+E+
Sbjct: 598 GWKGVILVIRDITR--------------ETEADRLKTELVSTVSHELRTPLSSIYGFTEL 643

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           + N+    +   +  +Y + I      + ++V D LD+ +++SG        + L   V 
Sbjct: 644 MLNREIDAI---KQQKYLSTIHNETERLSNLVTDFLDVQRMQSGGQRYQMAHLDLYSIVD 700

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
           + I + +       I +    +   P I+ D   +KQ+  N+++NAI ++P GGQ+ I+ 
Sbjct: 701 QVIGVYKASNGLHDIQLHL-LSVERPAIIGDETRIKQLLNNLVNNAIKYSPDGGQVDITV 759

Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
           + T  E   +++ D G+G+  Y        F ++ NS   R  GTGLGL + K +V  + 
Sbjct: 760 S-TDQENATIQITDHGIGIPQYAFAHLFDKFYRVDNSDTRRIGGTGLGLSICKEIVKEHD 818

Query: 790 GKFYIFSTPAKGTLIEIIFPLY 811
           G  ++ ST  KG+   +  PL+
Sbjct: 819 GVIHVESTVGKGSTFTVALPLH 840


>gi|217963901|ref|YP_002349579.1| sensor protein ResE [Listeria monocytogenes HCC23]
 gi|290892107|ref|ZP_06555103.1| sensor histidine kinase ResE [Listeria monocytogenes FSL J2-071]
 gi|217333171|gb|ACK38965.1| sensor protein ResE [Listeria monocytogenes HCC23]
 gi|290558230|gb|EFD91748.1| sensor histidine kinase ResE [Listeria monocytogenes FSL J2-071]
 gi|307571529|emb|CAR84708.1| two-component sensor histidine kinase [Listeria monocytogenes L99]
          Length = 596

 Score =  319 bits (818), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 80/378 (21%), Positives = 156/378 (41%), Gaps = 42/378 (11%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
             +  E  QL +IL   +DG+   + +  I+ +N    +                F    
Sbjct: 249 SALRQEKEQLSNILVGMADGVIKFSVDKTIILSNPPAEEFLH-----------NWFFSPE 297

Query: 505 TPSVMN------HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM 558
               +         L + L     Q  E        +   +++  ++            +
Sbjct: 298 NTEKVLIPVALNELLNDTLEKKESQVGEITF----ADHTYVAILTLLYTGEHVRSIVAVI 353

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            D++E KQ +                KSDF+  VSHE+RTP++ + G+SE I +      
Sbjct: 354 RDMTEEKQLE--------------KMKSDFVNNVSHELRTPISMLQGYSEAIIDGV--AQ 397

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
            +    E+A  I      +  +VND+LD++++E+G   +  + + L   + + IS   + 
Sbjct: 398 SDEEVREFAQIIYDESLRIGRLVNDMLDLARMEAGFNQMDNQKLPLAPLLRKVISNFDVL 457

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS---GGQIIIS-TTHTSN 734
           A E  + +             D   ++Q+ +N++ NAI  T      G++I+  T   + 
Sbjct: 458 AKENFVELGLELETPDLEYSFDPDRMEQVLINLIMNAIRHTGKEGYDGKVILKQTIDEAR 517

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGEGTGLGLPLAKAMVDANMGKFY 793
             +++ V D G G+   ++    + F ++  +++  +  GTG+GL + K +V+A+ GK  
Sbjct: 518 SNLVITVSDNGSGIAEEDIPYLFERFYKVDKARKRGKAVGTGIGLAIVKNIVEAHNGKIS 577

Query: 794 IFSTPAKGTLIEIIFPLY 811
           + S   KG+   I  PLY
Sbjct: 578 VESELGKGSDFIITLPLY 595


>gi|217963398|ref|YP_002349076.1| histidine kinase [Listeria monocytogenes HCC23]
 gi|217332668|gb|ACK38462.1| histidine kinase [Listeria monocytogenes HCC23]
 gi|307572027|emb|CAR85206.1| two-component sensor histidine kinase [Listeria monocytogenes L99]
          Length = 591

 Score =  319 bits (818), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 83/365 (22%), Positives = 170/365 (46%), Gaps = 23/365 (6%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           +++    +L +I++    G+ +IN +  ++ TNR + ++ G    +I  KPF   ++   
Sbjct: 246 EIKQNEQRLNAIVQNLVSGVMLINVDKQVIMTNRTMYQILG--ETEITGKPFYEVIKSF- 302

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
              ++  +         Q  E I     +     S+  I+ +    +   L +HDI++ +
Sbjct: 303 --ALSQLIEGTFETKTIQQKEIILYFPREMILDASVSPILGENGEITGIILLLHDITQIR 360

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
             +N               +S+F+  VSHE++TP+TA+ GF+E + +            +
Sbjct: 361 HLENV--------------RSEFVTNVSHELKTPVTALKGFAETLLDGAM--YDEVLLKK 404

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           +   I    + +  ++ D+L +S+IE   +  + E V +DE + ++   +   A EK I 
Sbjct: 405 FLTIIKEESDRLHRLIMDILALSRIEQNPVAENVELVDVDEVIEQSARTIFEMATEKNIR 464

Query: 686 IRT-SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744
           +      +    I  D   ++QI +N+LSNAI++TP  G++ +        EVI+ V D 
Sbjct: 465 VTIPEKTSASVMIETDRDKLQQIIINLLSNAINYTPVDGKVEVKL-IEQEAEVIIEVTDN 523

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G+   ++++  + F ++  ++     GTGLGL + K +V+   G+  + S    G+  
Sbjct: 524 GIGIPAKDIDRVFERFYRVDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGSTF 583

Query: 805 EIIFP 809
            +  P
Sbjct: 584 RVTLP 588


>gi|212691328|ref|ZP_03299456.1| hypothetical protein BACDOR_00820 [Bacteroides dorei DSM 17855]
 gi|212666081|gb|EEB26653.1| hypothetical protein BACDOR_00820 [Bacteroides dorei DSM 17855]
          Length = 781

 Score =  319 bits (818), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 105/513 (20%), Positives = 204/513 (39%), Gaps = 24/513 (4%)

Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDI 360
            L      S      +   +    +DK        S  G L YAN  F+     K     
Sbjct: 142 VLIMCRDISERVATQQNLEIFKRVLDKVSDSILAVSVDGTLVYANRQFIEEYGVKEELGT 201

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
           +    L   L+  ++ D    +     R +    A  A+   +    E  L +  +    
Sbjct: 202 QKVYDLPVSLNTKEIFDKRVQEI----RDNGGNFAYRAKYTRV---GETKLRVHQVSAFM 254

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR--EGIILSTN 478
                E M       +  D   N+ ++      + +IL      + + +   +   L  N
Sbjct: 255 IQNQGEEMIWFFT-QDITDVIKNRDELRELNYLMDAILNNIPVYLFVKDPEDDFRYLYWN 313

Query: 479 RAVSKLFGYPVEDILRK-PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
           +A +     P    L    F VF E       +    E++    R  +++  + +T E +
Sbjct: 314 KAFASHSKIPASKALGHIDFEVFPEHENAEKFHRDDLELIRTRERMEMQETYVTATGETR 373

Query: 538 LLSLRIIIKKLPFSSC-YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
           ++     +  L   +        DI+  +  + +L  A+  AE+    K+ FLA +SHEI
Sbjct: 374 IVQTLKTLVPLEGRAPLIIGISWDITNMQNIEQELVQARIKAEQSDRLKTAFLANMSHEI 433

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTPL AI+GFS ++       + + +   Y++ I+++  ++L ++ND+LD++KIE+G + 
Sbjct: 434 RTPLNAIVGFSRLM--TMADNVADEKL--YSDIINQNSEILLQLINDILDLAKIEAGTLE 489

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716
               P+ L E       + +       +++     +    I  D   + Q+  N+++NAI
Sbjct: 490 YVRYPMDLGELCRNVYEMHKDRVQT-GVVLILDNKDTSLIINEDQNRIMQVVTNLITNAI 548

Query: 717 HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
            FT  G +I           +   V+DTG+G++  +++   + F ++        +GTGL
Sbjct: 549 KFTFKG-EIRFGFEVRKE-YIDFYVKDTGMGISEEKIKMIFERFVKLNTF----VQGTGL 602

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GL + + +V+   G+    S   +G+      P
Sbjct: 603 GLAICRVIVEKIGGEITAESKLNEGSTFRFTIP 635



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 41/127 (32%), Gaps = 5/127 (3%)

Query: 457 ILEATSDGIAIINREGI-ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           IL++  D + + N E   I   +   +   G    D         + +     +++ L +
Sbjct: 48  ILDSLPDMLTVFNHEETGIEVVSNEETNHVGVSNNDFKGMRMQDMVPKEAYHNIHNNLQK 107

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575
            ++     T          +  L      I  L       +   DISE    +  L   K
Sbjct: 108 AIATGRGSTAHHEL---DVDGTLHYYENRIFPL-DEEYVLIMCRDISERVATQQNLEIFK 163

Query: 576 KIAEKES 582
           ++ +K S
Sbjct: 164 RVLDKVS 170


>gi|39354|emb|CAA41252.1| bvgS product, put. sensor protein [Bordetella bronchiseptica]
          Length = 1238

 Score =  319 bits (818), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 107/556 (19%), Positives = 200/556 (35%), Gaps = 31/556 (5%)

Query: 274 DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV-DKCPIP 332
                            T+      +   L  + +P       +        V D     
Sbjct: 399 TRQDPAAPADADHLDGRTIAMVRNSAAIPLLQQRYPQAKVVTADNPTEAMLLVADGQADA 458

Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
                    +Y N  F    +  S  D+  A            +        +L ++  +
Sbjct: 459 VVQTQISASYYVNRYFAGKLRIASALDLPPAEIALA------TARGQTELISILNKALYS 512

Query: 393 CIAASARLHTIQW---NRENSLAMTFIPFEKANQFPENMPQNG-------IEPEDVDTRI 442
                      +W   + +      +            +           +  +    + 
Sbjct: 513 ISNDELASIVSRWRGSDGDPRTWYAYRNEIYLLIGLGLLSALLFLSWIVYLRRQIRQRKR 572

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            +R +  ++  +  +++ T + I + ++EG +L  N A    FG   + +L K       
Sbjct: 573 AERALNDQLEFMRVLIDGTPNPIYVRDKEGRMLLCNDAYLDTFGVTADAVLGKTIPEANV 632

Query: 503 QNTPSVMNH----YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLT 557
              P++        LT + +    +  ++      +   +    +               
Sbjct: 633 VGDPALAREMHEFLLTRMAAEREPRFEDRDVTLHGRTRHVYQWTVPYGDSLGELKGIIGG 692

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
             DI+E  +   +L  AK+ A+  +  K+ FLA +SHEIRTP+ AIIG  E+       P
Sbjct: 693 WIDITERAELLRELHDAKESADAANRAKTTFLATMSHEIRTPMNAIIGMLELAL---LRP 749

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
                  +       S   +L+++ D+LDI+KIE+GK +L     +L      AI +   
Sbjct: 750 ADQEPDRQSIQVAYDSARSLLELIGDILDIAKIEAGKFDLAPVRTALRALPEGAIRVFDG 809

Query: 678 YANEKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
            A +K I +        +  +L D   +KQ+  N++ NAI FT  G Q++++ T   + E
Sbjct: 810 LARQKGIELVLKTDIVGVDDVLIDPLRMKQVLSNLVGNAIKFTTEG-QVVLTVTARPDGE 868

Query: 737 ---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQ-QIRGEGTGLGLPLAKAMVDANMGKF 792
              V   V DTG G++  +  +  KPF Q+  S       GTGLGL +++ +V+   G  
Sbjct: 869 AAHVQFSVSDTGCGISEADQRQLFKPFSQVGGSAEAGPAPGTGLGLSISRRLVELMGGTL 928

Query: 793 YIFSTPAKGTLIEIIF 808
            + S P  GT + +  
Sbjct: 929 VMRSAPGVGTTVSVDL 944



 Score = 51.2 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/232 (10%), Positives = 56/232 (24%), Gaps = 12/232 (5%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D  G +   ++    T G  A  ++G  + + + +        + + L  +     +   
Sbjct: 599 DKEGRMLLCNDAYLDTFGVTADAVLGKTIPEANVVGDPALAREMHEFLLTRMAAEREPRF 658

Query: 150 WPIEGTNLYVP--IDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
              + T       +    +P      E  G  G  I        +         +     
Sbjct: 659 EDRDVTLHGRTRHVYQWTVPYGDSLGELKGIIGGWI--DITERAELLRELHDAKESADAA 716

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
           +  K    +    +                 +++ L       D       Y    S   
Sbjct: 717 NRAKTTFLATMSHEIRTPMNAIIGML-----ELALLRPADQEPDRQSIQVAYDSARSLLE 771

Query: 268 SLPEQEDFHTINLN---QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
            + +  D   I          +     L   +   F+ L+ +    L    D
Sbjct: 772 LIGDILDIAKIEAGKFDLAPVRTALRALPEGAIRVFDGLARQKGIELVLKTD 823


>gi|332525007|ref|ZP_08401191.1| signal transduction histidine kinase [Rubrivivax benzoatilyticus
           JA2]
 gi|332108300|gb|EGJ09524.1| signal transduction histidine kinase [Rubrivivax benzoatilyticus
           JA2]
          Length = 1104

 Score =  319 bits (818), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 112/747 (14%), Positives = 228/747 (30%), Gaps = 44/747 (5%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
                ++ ++    +         +G     V  +L              + T      L
Sbjct: 237 GPDLRVRAMNPRFAEITRLDPA--LGRPGTPVRALLEAQMRAGRLGGGDPEATIERWLAL 294

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
               G    V +      +  R           +           A      +  + L +
Sbjct: 295 LRGGGHATTVRVMPDGRTVELRRNATPDGGFVAVAVDITQRLAAEAALAEKQRMLALLLD 354

Query: 210 IKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
                                      LR++         +  +D  +   +        
Sbjct: 355 STTQGFWFVDNALRTTDANPAMCRMLGLRLEALRGRTVWEFVDEDQAVILREQVRRREAG 414

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP-----------SLSAYF 315
                +      +            + +        +   +               S   
Sbjct: 415 EVGHYELRLRRDDGTPLWCMNQATPILDAQGRKTGAIGLFSDIGELRRATELQQRTSRLL 474

Query: 316 DEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
           +E   L   T+   P     +   G     N   + LT     + +     L+       
Sbjct: 475 EEKSRLLEATLANLPQGVLTLDEQGRAAAWNRRLVELTGV-PEELLRTHPTLNEFARWQV 533

Query: 375 LSDNNAIKPVML---------YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
                   P  L                 A  A       +       T+          
Sbjct: 534 DHGGVGPAPGELDPTAREPIEAALRGDLDALPASYQRTGADGRTLQVATYRS-------- 585

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
           +  P      +  D    ++ +     +  S+ +A    + +   +G     N+      
Sbjct: 586 DGGPVVRTFTDITDALHAEQALRESESRFRSLADAAPALVVVCAPDGRPEWVNQRWQAFT 645

Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
           G  VE  L +P+   +  +  +               ++          +     +    
Sbjct: 646 GSGVEQALAEPWHARVHADDQAACIAAFEAAR--PEARSFSAEYRLRRADGGWGWIADTC 703

Query: 546 KKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
                       +     DI+  K  +  L  A+  AE+ +  KSDFL+R+SHE+RTPL 
Sbjct: 704 VPRRTPGGGLEGWIRYGWDITARKAAEAALIAARDDAERANRAKSDFLSRMSHELRTPLN 763

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           A++GF +++++    PL  P   +    + R G  +L +++ +LD++ I+ G + +  E 
Sbjct: 764 AVLGFGQLLESDAAEPLT-PLQRQRLQQVLRGGRHLLAMIDQVLDLAGIDGGTLGVRLEA 822

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           V    AV+EA  LV   A E+ + +          +LAD   ++Q+   +L+NA+ +   
Sbjct: 823 VPAAAAVAEACRLVAPLAAERGVRLEPPAVAVEGFVLADAARLRQVLAGLLTNAVKYNRR 882

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           GG++ I+      E + L V D G G+   +  +  + F ++  +     +G G+GL LA
Sbjct: 883 GGRVSIAWR-DEGEHLRLEVHDDGPGIAPADQRRVFQAFERLEGAHA-ASDGAGVGLALA 940

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIF 808
           K +V+A  G+  + S P +G+   +  
Sbjct: 941 KWLVEAMHGRIGLDSAPGRGSTFWVRL 967



 Score = 91.2 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 33/376 (8%), Positives = 87/376 (23%), Gaps = 30/376 (7%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK 146
           W +D      + +  + + +G     + G  + +  D              +     + +
Sbjct: 361 WFVDNALRTTDANPAMCRMLGLRLEALRGRTVWEFVDEDQAVILREQVRRREAGEVGHYE 420

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRG----FGIVHVNRVDNDPRALGKRLDK 202
             L   +GT   +     A PI       +G  G     G +          +       
Sbjct: 421 LRLRRDDGTP--LWCMNQATPILDAQGRKTGAIGLFSDIGELRRATELQQRTSRLLEEKS 478

Query: 203 KFSH--LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY------------- 247
           +     L  + +G  +++++       +       +  ++                    
Sbjct: 479 RLLEATLANLPQGVLTLDEQGRAAAWNRRLVELTGVPEELLRTHPTLNEFARWQVDHGGV 538

Query: 248 -AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
                ++  T + P+  +    L      +          Q      +       +    
Sbjct: 539 GPAPGELDPTAREPIEAALRGDLDALPASYQRTGADGRTLQVATYRSDGGPVVRTFTDIT 598

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGG 365
           +         E E+      D  P    V +  G   + N  +   T       +     
Sbjct: 599 DALHAEQALRESESRFRSLADAAPALVVVCAPDGRPEWVNQRWQAFTGSGVEQALAEP-- 656

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
                 A   +D+ A        +     + SA  + ++        +      +     
Sbjct: 657 ----WHARVHADDQAACIAAFEAARPEARSFSAE-YRLRRADGGWGWIADTCVPRRTPGG 711

Query: 426 ENMPQNGIEPEDVDTR 441
                     +    +
Sbjct: 712 GLEGWIRYGWDITARK 727



 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/202 (7%), Positives = 54/202 (26%), Gaps = 19/202 (9%)

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
             ++A     +   +       +  +       + +          L  I +   +G+ +
Sbjct: 176 GIAVAALLGLYGLVSAERNWRQRLALATARRQEQRSLVAARDSEALLRLIYDHVDEGLLV 235

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
              +  + + N   +++                L +            +   D   T+E+
Sbjct: 236 AGPDLRVRAMNPRFAEITRLDPALGRPGTPVRALLEAQMRAG-----RLGGGDPEATIER 290

Query: 528 ITLGSTKEEKLLSLRIII--------KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579
                       ++R++         +       +     DI++    +  L+  +++  
Sbjct: 291 WLALLRGGGHATTVRVMPDGRTVELRRNATPDGGFVAVAVDITQRLAAEAALAEKQRMLA 350

Query: 580 KESSHKSD---FLARVSHEIRT 598
                 +    F+      +RT
Sbjct: 351 LLLDSTTQGFWFVDNA---LRT 369



 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/379 (6%), Positives = 79/379 (20%), Gaps = 18/379 (4%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
              +D  G     +  L +  G    +++               +  +G      +    
Sbjct: 492 VLTLDEQGRAAAWNRRLVELTGVP-EELLRTHPTLNEFARWQVDHGGVGPAPGELDPTAR 550

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFG-----IVHVNRVDNDPRALGKRL 200
           +     + G    +P          R  + + +R  G                    +  
Sbjct: 551 EPIEAALRGDLDALPASYQRTGADGRTLQVATYRSDGGPVVRTFTDITDALHAEQALRES 610

Query: 201 DKKFSHLHEIKKGHSSVEKEKYD---IFSQQSPPPHLRMKNKVSSLTEYYAH-KDDVLKT 256
           + +F  L +       V         +  +        ++  ++       H  D     
Sbjct: 611 ESRFRSLADAAPALVVVCAPDGRPEWVNQRWQAFTGSGVEQALAEPWHARVHADDQAACI 670

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
             +     E  S   +      +             +        ++ +    +     +
Sbjct: 671 AAFEAARPEARSFSAEYRLRRADGGWGWIADTCVPRRTPGGGLEGWIRYGWDITARKAAE 730

Query: 317 EGENLTPETVDKCPIPF------FVYSHGNLFYANPSFLLLTKYKSVDDI--EIAGGLST 368
                  +  ++             +       A   F  L +  + + +       L  
Sbjct: 731 AALIAARDDAERANRAKSDFLSRMSHELRTPLNAVLGFGQLLESDAAEPLTPLQRQRLQQ 790

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
           +L   +       + + L   D   +               +  +      +     E  
Sbjct: 791 VLRGGRHLLAMIDQVLDLAGIDGGTLGVRLEAVPAAAAVAEACRLVAPLAAERGVRLEPP 850

Query: 429 PQNGIEPEDVDTRINKRKM 447
                     D    ++ +
Sbjct: 851 AVAVEGFVLADAARLRQVL 869


>gi|237714293|ref|ZP_04544774.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262408330|ref|ZP_06084877.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_22]
 gi|229445785|gb|EEO51576.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262353882|gb|EEZ02975.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_22]
          Length = 926

 Score =  319 bits (818), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 98/520 (18%), Positives = 192/520 (36%), Gaps = 31/520 (5%)

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIE 361
           L        +   D  E L        P    +Y   G L   N   L +    +  D+ 
Sbjct: 413 LDSTGSVQANRALDRSEKLFQNIFANIPAGVEIYDKDGYLIDLNNKDLEIFGVVNKSDVI 472

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                        + D    + ++ +R +    +        + +R N + +     +  
Sbjct: 473 GVNFFDNPNVPQNIRDRVRNEDLVDFRLN---YSFEQAGGYYETSRSNVIELYSKVSKLY 529

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA---IINREGIILSTN 478
           +          I  ++ +      ++         I +    G A   ++NR+G  +   
Sbjct: 530 DNEGNFSGYILISIDNTERIDAMNRIRDFENFFLMISDYAKVGYAKLNLLNRKGYAI--- 586

Query: 479 RAVSKLFGYPVEDILRKPFTVF--LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
           +   K  G   +  L +   V+  +          +   +     R+  +          
Sbjct: 587 KQWYKNLGEEEDIPLSEVVAVYSQMHPEDRKRFLDFYDGVR-DGKRRHFQGEMRIRRPGT 645

Query: 537 K--LLSLRIIIK-----KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
           K     +   +                  +DI+E K+ + +L  A+  AE     KS FL
Sbjct: 646 KNEWNWVSSNVMVTNYKPEENEIEIIGINYDITELKETEAELIQARDKAEMMDRLKSAFL 705

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
           A +SHEIRTPL AI+GFS+++              EY   +  +  L+L +++D+LD+SK
Sbjct: 706 ANMSHEIRTPLNAIVGFSDLLVETEELA----ERQEYIKIVRENNELLLQLISDILDLSK 761

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709
           IE+G        V ++    + +  + + A E+ + +       +  +++D   + Q+  
Sbjct: 762 IEAGTFEFTNGDVDVNLLCEDIVRSMGMKAKEE-VELVFDDHLPVCHVISDRNRIHQVIS 820

Query: 710 NILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
           N ++NA+ FT  G  I +        E+   V DTG+G+   +L    + F ++ +    
Sbjct: 821 NFVNNAMKFTSEGS-IHVGYKLKD-GELEFYVEDTGIGIEKEQLPHIFERFVKLNSFVH- 877

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
              GTGLGL + +++V+   G+  + S   KG+      P
Sbjct: 878 ---GTGLGLSICQSIVEQLGGRIGVDSEKGKGSRFWFTIP 914



 Score = 47.3 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 53/154 (34%), Gaps = 10/154 (6%)

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG-YP 488
             G+  +   +    R ++       +I      G+ I +++G ++  N    ++FG   
Sbjct: 408 IVGLFLDSTGSVQANRALDRSEKLFQNIFANIPAGVEIYDKDGYLIDLNNKDLEIFGVVN 467

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG---STKEEKLLSLRIII 545
             D++   F  F   N P  +   +     +D R        G    T    ++ L   +
Sbjct: 468 KSDVIGVNF--FDNPNVPQNIRDRVRNEDLVDFRLNYSFEQAGGYYETSRSNVIELYSKV 525

Query: 546 KKLPFSS----CYSLTMHDISEWKQEKNKLSHAK 575
            KL  +      Y L   D +E     N++   +
Sbjct: 526 SKLYDNEGNFSGYILISIDNTERIDAMNRIRDFE 559


>gi|94314629|ref|YP_587838.1| PAS/PAC sensor hybrid histidine kinase (bvgS-like) [Cupriavidus
           metallidurans CH34]
 gi|93358481|gb|ABF12569.1| PAS/PAC sensor hybrid histidine kinase (bvgS-like) [Cupriavidus
           metallidurans CH34]
          Length = 1040

 Score =  319 bits (818), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 126/707 (17%), Positives = 243/707 (34%), Gaps = 40/707 (5%)

Query: 136 LLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN----RVDN 191
            L+ +     +    P         +  A +P + +    +      I        R  N
Sbjct: 187 ALRARFDAAIRAIPKPTRLAISTHWVPTALMPHFDKALNLTTEESAWIAAHPVARYRATN 246

Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD 251
           D        D+    +    +    +E+     F   S   +    +  +   +     D
Sbjct: 247 DRV-PFVFSDEHGESVGLSVQVLGKIEERTGLRFEPVSADGNSDPDHATTPTIQPIVPVD 305

Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
              +      LT  E        +  +   +         L              +    
Sbjct: 306 GPSERTD--GLTITEPYFQGY--WAIVAHVRQHGINNILDLAGKRVAVVLPNPIIDRLRA 361

Query: 312 SAYFDEG-ENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS--T 368
           +            +            + GN+  AN     L +    + + I   +S   
Sbjct: 362 TVPLQVVKAASYRDAYRMVATGIADATLGNMMTAN----YLIRESYPEALRIVAPISGTP 417

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE----------NSLAMTFIPF 418
           L     +  +  +   +L ++  +          ++W+             S A   +  
Sbjct: 418 LNVGIGVPADEPMLLAILNKALLSLSREDINALRLRWSEPSSIAGSTETLPSWAWFSLSA 477

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
                    +    +  +    R  +  +  ++    SIL+A    I + + +  +++ N
Sbjct: 478 GLVLLAISLLWSQSLRQQIQRRRRMEAVLHEQLAFQTSILDAIPQPIYLRDIDLRLMTCN 537

Query: 479 RAVSKLFGYPVEDILRKPFTVF-LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
            A  +  G   + +  +      L+     +      ++L+     TL++  +   KE  
Sbjct: 538 AAFERALGCGRKQMRGRTIDQMPLKLGDVPLSMQTYRKVLATGEAATLDRTLMIEGKERI 597

Query: 538 LL-SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
           +L  +  +               D++E +Q   +L+ AK  AE  +  KS FLA +SHEI
Sbjct: 598 VLNWVEPLRNATGGVVGIIGGWIDMTERQQMVTELASAKDRAEAANRAKSAFLASISHEI 657

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTP+ AI+G  E+    +  P  +            S   ++ +++D+LD SK+E+GK  
Sbjct: 658 RTPMNAILGMLELTLQDKRLPDDD---RLQVETAQESAKSLIGLIDDILDASKMEAGKFV 714

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNA 715
           L  +P  L + + +  SL  L A+ K + +     + +    + D    KQ+  N++SNA
Sbjct: 715 LTPQPAPLRQLIGDVTSLFGLAASRKGVQLEAIVDDAVAPCHMVDPLRFKQVLNNLVSNA 774

Query: 716 IHFTPSGGQIIISTTHT----SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           + FT  G  ++I    T      + +   V DTG G+    L+K  +PF QI    +   
Sbjct: 775 VRFTDRGS-VVIRLGATNLTPDCQSLTFSVSDTGTGIPEDGLKKLFQPFTQI-GDTKRSA 832

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI--EIIFPLYDTSHP 816
            GTGLGL + + +V    G   I S   KGT +   I  P+     P
Sbjct: 833 GGTGLGLSICQRLVTKMHGTIGITSEVGKGTTVTATIELPIAAEIAP 879


>gi|327383867|gb|AEA55343.1| Two-component sensor histidine kinase [Lactobacillus casei LC2W]
 gi|327387048|gb|AEA58522.1| Two-component sensor histidine kinase [Lactobacillus casei BD-II]
          Length = 636

 Score =  319 bits (818), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 84/383 (21%), Positives = 165/383 (43%), Gaps = 48/383 (12%)

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
             +L S+L   +DG+   +R G ++  N+          ED++       L       + 
Sbjct: 264 RRRLDSVLAHMTDGVIATDRRGNVIIINQTALNFLNTKNEDVIGVSILKLLNIAKDYTLR 323

Query: 511 HYLTEILSL--DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568
             L     L  D  + L+   +        +   +I ++  F S     +HD++E ++  
Sbjct: 324 DLLEHQTELLLDFSEQLDHELILR------VDFSLIQRETGFISGLVAVLHDVTEQQKI- 376

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI-EYA 627
                          ++ +F++ VSHE+RTPLT++  + E + +   G   +P+    + 
Sbjct: 377 -------------DRNRKEFVSNVSHELRTPLTSVRSYIEALSD---GAWKDPKLAPRFL 420

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV------------ 675
           N      + ++ ++NDLL +S+++SG    + E V+L+E  +  +               
Sbjct: 421 NVTQEETDRMIRMINDLLSLSRLDSGTSKFNLETVNLNEFFNYVLDRFDMMLKTDNEHTG 480

Query: 676 ---------QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726
                    Q    +KR  I+    +    +  D     Q+  NI++NAI ++P GG I 
Sbjct: 481 EAKTAQPLPQPDGQKKRYSIKREITDQDLWVEIDTDKFMQVIDNIMNNAIKYSPDGGTIT 540

Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
                 +++ VIL + D G+G+   +L K    F ++  ++  +  GTGLGL ++K +V+
Sbjct: 541 ARL-FQTHDHVILSISDQGLGIPRQDLGKIFDRFYRVDKARSRKQGGTGLGLAISKEVVE 599

Query: 787 ANMGKFYIFSTPAKGTLIEIIFP 809
           A  G+ ++ S   +G+   I  P
Sbjct: 600 ALHGRIWVDSQEGRGSTFYISLP 622


>gi|170741231|ref|YP_001769886.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
 gi|168195505|gb|ACA17452.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
          Length = 873

 Score =  319 bits (818), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 97/442 (21%), Positives = 190/442 (42%), Gaps = 26/442 (5%)

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT-RINK 444
           L    R                E       +         +      I  +      +  
Sbjct: 284 LLAGARALARGEVIAPASTRVGEADQIGVALASASLQLRMQADALQAINRDLERRVAVRT 343

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           R++  +   L   L+A   G+ +++  GI+  TNR  + L G     +  +P    + + 
Sbjct: 344 RELAGKEALLTMTLDAMDQGLVMVDGAGIVAVTNRRAADLLGLDPAFLASRPSCEAMREA 403

Query: 505 TPS-----VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH 559
             +      ++  + + L       +           ++L +                  
Sbjct: 404 LQARGEFAALDPAIRDGLRDRDLDRIGARYERVRPNGQVLEVANTAT---ADGGILRIYT 460

Query: 560 DISEWKQEKNKLSHAKKIAEKESSH-------KSDFLARVSHEIRTPLTAIIGFSEVIKN 612
           D++  K  +  L+ A ++A++           K+DFLA +SHEIRTPLTA++G+++++  
Sbjct: 461 DVTARKAVETALAEAHRLAQQARRAAEAASAAKTDFLATMSHEIRTPLTAVLGYADLLMA 520

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
           +                I  +G  +  IV+D+LD S+IE+G+++L   P SL + + EA+
Sbjct: 521 R---SDLEAEQARLVGRIVTAGEALRTIVDDVLDFSRIEAGRVDLAPRPFSLADLIEEAL 577

Query: 673 SLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
           +LV+  A+ K + I  +    +P  ++ D+  ++QI LN+L+NA+ FTP+G  I ++   
Sbjct: 578 ALVRPEADRKGLPIAVAIEPGLPPRLVGDVDRLRQILLNLLNNAVKFTPAGS-IGLAVAR 636

Query: 732 TSNE-----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
                     +++ VRDTG+G+   +  +  + F Q+  S Q +  GTGLGL +++ +V+
Sbjct: 637 DPTGPAEGRGLLISVRDTGIGIPADKHARLFERFSQVDGSIQRQYGGTGLGLAISRRLVE 696

Query: 787 ANMGKFYIFSTPAKGTLIEIIF 808
           A  G+  + S   +G+      
Sbjct: 697 AMHGRIGVESREGEGSTFWFRL 718


>gi|160878669|ref|YP_001557637.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           phytofermentans ISDg]
 gi|160427335|gb|ABX40898.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           phytofermentans ISDg]
          Length = 490

 Score =  319 bits (818), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 86/363 (23%), Positives = 175/363 (48%), Gaps = 17/363 (4%)

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL-TE 515
           +L+  ++G+ I ++ G I   N A  +  GY ++ ++         +     M++ +   
Sbjct: 9   VLKHCAEGVFIFDQTGQIFYANDAAMQETGY-MDKLVDTNILDIFPKALKVHMDNMIINR 67

Query: 516 ILSLDLRQTLEK---ITLGSTKEEKLLSLRIII--KKLPFSSCYSLTMHDISEWKQEKNK 570
               ++++T+E     T    K +    +R+ +   +    +       +++E      +
Sbjct: 68  FEVEEVKETMEYSIIETFAYRKNQTCYPVRMKLLWGEKEKDNFSVCITRNMTELNAVMKR 127

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
             + K+  ++ +  K++FLA ++HE+RTP+  + G ++V+     G        E  N I
Sbjct: 128 EKNVKEELKEATGVKNEFLANITHELRTPVNGMKGLADVLL----GTELTQNQRENVNII 183

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
            R  + + +I+N +LD SKI +GKM L  + + +   +   +S      NEK + ++ + 
Sbjct: 184 RRCCDNMTNIINGILDFSKITAGKMQLENKVIDISNFLKNTLSYHIPKLNEKGLKLQVNI 243

Query: 691 ANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIST----THTSNEEVILRVRDTG 745
            +N+P+ IL D   ++QI  N++SNAI FT  G Q++I            E+   V D+G
Sbjct: 244 GDNVPKKILGDELRLEQILSNLISNAIKFTSVG-QLVIEVINTDQKEDEVELFFMVIDSG 302

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G++  +++K  + F Q+  S   R  GTGLGL ++K++V+   G  ++ S   +G+   
Sbjct: 303 IGISKEDMDKLFQSFSQVDGSITRRYGGTGLGLAISKSLVELMGGTIHVSSEIGRGSTFS 362

Query: 806 IIF 808
              
Sbjct: 363 FSI 365


>gi|224585125|ref|YP_002638924.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
 gi|224469653|gb|ACN47483.1| aerobic respiration control sensor protein [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
          Length = 788

 Score =  319 bits (818), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 85/435 (19%), Positives = 177/435 (40%), Gaps = 17/435 (3%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L +          +L  +Q     +     I   +  +         ++ E
Sbjct: 91  EESRQRLSRLVQKLEEMRERDLKL-NVQLKDNIAQLNQEIVDREKAEAELQETFEQLKVE 149

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             +    + ++E +   L S L+A+ D +   N +      NRA+  L G   + ++   
Sbjct: 150 IKEREEAQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 209

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCY 554
                       +     ++   ++  T E+        +    +R +    ++      
Sbjct: 210 PEDVYSPEAAEKVIETDEKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGL 269

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+        +   E+ S  K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 270 MGFGRDITERKR-------YQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTN 322

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     +Y   I  S   + +I ND++D+ K+E  K+ L  +PV     +++  +L
Sbjct: 323 LTA----EQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFMADLENL 378

Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
             L A +K +         +P  ++ D   ++QI  N++SNA+ FT  G Q+ +   +  
Sbjct: 379 SGLQAQQKGLRFVLEPTLPLPHKVITDGTRLRQILWNLISNAVKFTQQG-QVTVRARYDE 437

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMGKF 792
            + +   V D+G+G+   E +K    + Q+ +S   +   GTG+GL +++ +     G  
Sbjct: 438 GDMLHFEVEDSGIGIPQDEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDI 497

Query: 793 YIFSTPAKGTLIEII 807
            + S P KG+   + 
Sbjct: 498 TVSSLPGKGSTFTLT 512


>gi|227821363|ref|YP_002825333.1| two component sensor kinase [Sinorhizobium fredii NGR234]
 gi|227340362|gb|ACP24580.1| two component sensor kinase [Sinorhizobium fredii NGR234]
          Length = 775

 Score =  319 bits (818), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 121/666 (18%), Positives = 243/666 (36%), Gaps = 49/666 (7%)

Query: 185 HVNRVDNDPRALGKRLDK--KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS 242
                      L   L     F           +  ++      +        + +    
Sbjct: 115 RWETERRLAEYLPAELLDTGMFLLTVRRDGRIFASTQDGAHFIGRTLTSIAPDIASLQYC 174

Query: 243 LTEYYAHKDDV-LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG--------TLQ 293
                A +  +        L+    S+                +             +  
Sbjct: 175 GEGSGAIRATIDGVEHLVALMQVPASAGVVLAATPVAQFEAAWRDDVSLNVTLFAGISAI 234

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLT 352
                   Y+  +      + F E        + +     + +       + + S   + 
Sbjct: 235 LLVVLYAYYIQAKRARDADSVFAESNLRVETALSRGRCGLWDFDLANRRLFWSRSMYEML 294

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
                  +   G  + L+      ++  +  V    +  +      ++  ++    + + 
Sbjct: 295 GMPGDSSVLSFGDAARLMH----PEDRGVYRVARAIAKGSERQID-QVFRMRHADGHYVW 349

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG 472
           +            +     GI  +  +     ++      +L   +E TS+   + ++  
Sbjct: 350 LRARAQVIRTVSGK-THLIGIAMDVTEQHRLAQRYAEADQRLTDAIECTSEAFVLWDKHD 408

Query: 473 IILSTNRAVSKLFGYPVEDILRKP-------FTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
            ++  N    + +  P   ++                               + +++   
Sbjct: 409 RLVMCNTHYQQAYQLPDHVLVPGTERAVVHAAAARPVVERRVADPDRSNHSQTSEVQLAD 468

Query: 526 EKITL---GSTKEEKLLSLRIIIKKL--------PFSSCYSLTMHDIS------EWKQEK 568
           E+        T++  L+S+   I  L                T+ D+S      E ++ +
Sbjct: 469 ERWLQINDRRTRDGGLVSVGTDITLLKRHQVRLRESERRLMATIGDLSASRITLERQKAE 528

Query: 569 -----NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
                      K+ AE  +  KS+FLA +SHE+RTPL AI+GFSE+++NQ FGPLG+ +Y
Sbjct: 529 LSVANANYQAEKERAEAANRAKSEFLANMSHELRTPLNAILGFSEILQNQMFGPLGSEKY 588

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            EY+  I  SG  +L+++ND+LD+SKIE+G M +  E + L   + E +    + A +K 
Sbjct: 589 DEYSRDIHESGKHLLNVINDILDMSKIEAGHMRITRERIDLAPLIEETLRFTTIPAEQKN 648

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
           I +    ++ +  + AD R++KQ+ LN+LSNA+ FT  GG+I +         V L + D
Sbjct: 649 IRVVQEISSGL-TMFADRRAMKQVLLNLLSNAVKFTNEGGRISLRARKV-RGAVTLTIAD 706

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           +G+G+  Y L+K   PF Q+ +       G+GLGL +++++   + G+  I S    GT+
Sbjct: 707 SGIGIPRYALQKIGHPFEQVQSQYAKSKGGSGLGLAISRSLTRLHGGRMKIHSAEKVGTI 766

Query: 804 IEIIFP 809
           I +  P
Sbjct: 767 ISVRIP 772



 Score = 58.1 bits (139), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 41/411 (9%), Positives = 94/411 (22%), Gaps = 37/411 (9%)

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY 246
            R       L  +         E+        +      ++  P     +   + +    
Sbjct: 8   RRGSAADGRLRLKSPGFSGLERELIDRARRFAEPASRRLARAEPVLKRSIPVLIIAFLLI 67

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
            A                   S    E       ++ T            +     L   
Sbjct: 68  VALS---------------RMSGIMDEHARMEASSRRTVSLAATAATAAFQADGSELF-A 111

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
           +           E L  E +D       V   G +F +                     L
Sbjct: 112 DGQRWETERRLAEYLPAELLDTGMFLLTVRRDGRIFASTQDGAHFIGRTLTSIAPDIASL 171

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ-------WNRENSLAMTFIPFE 419
               +              L    +   +A   L           W  + SL +T     
Sbjct: 172 QYCGEGSGAIRATIDGVEHLVALMQVPASAGVVLAATPVAQFEAAWRDDVSLNVTLFAGI 231

Query: 420 KA--NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
            A                 D D+   +  + +E     + L     G+   +     L  
Sbjct: 232 SAILLVVLYAYYIQAKRARDADSVFAESNLRVE-----TALSRGRCGLWDFDLANRRLFW 286

Query: 478 NRAVSKLFGYPVED--ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
           +R++ ++ G P +   +        +      V    +   ++    + ++++      +
Sbjct: 287 SRSMYEMLGMPGDSSVLSFGDAARLMHPEDRGVYR--VARAIAKGSERQIDQVFRMRHAD 344

Query: 536 EKLLSLRIIIKKLPFSSC---YSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
              + LR   + +   S          D++E  +   + + A +       
Sbjct: 345 GHYVWLRARAQVIRTVSGKTHLIGIAMDVTEQHRLAQRYAEADQRLTDAIE 395



 Score = 45.8 bits (107), Expect = 0.028,   Method: Composition-based stats.
 Identities = 19/255 (7%), Positives = 58/255 (22%), Gaps = 7/255 (2%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN--HIGDLLKRQNTW 143
            W+ D        S  + + +G      + +   D + ++H +      +   + + +  
Sbjct: 274 LWDFDLANRRLFWSRSMYEMLGMPGDSSV-LSFGDAARLMHPEDRGVYRVARAIAKGSER 332

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                         YV +   A  I + + +       GI       +         D++
Sbjct: 333 QIDQVFRMRHADGHYVWLRARAQVIRTVSGK---THLIGIAMDVTEQHRLAQRYAEADQR 389

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL-RMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
            +   E       +  +   +    +      ++ + V       A              
Sbjct: 390 LTDAIECTSEAFVLWDKHDRLVMCNTHYQQAYQLPDHVLVPGTERAVVHAAAARPVVERR 449

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
            ++       +       ++   +      ++    S                +    L 
Sbjct: 450 VADPDRSNHSQTSEVQLADERWLQINDRRTRDGGLVSVGTDITLLKRHQVRLRESERRLM 509

Query: 323 PETVDKCPIPFFVYS 337
               D       +  
Sbjct: 510 ATIGDLSASRITLER 524


>gi|163853828|ref|YP_001641871.1| ATPase domain-containing protein [Methylobacterium extorquens PA1]
 gi|163665433|gb|ABY32800.1| ATP-binding region ATPase domain protein [Methylobacterium
           extorquens PA1]
          Length = 846

 Score =  319 bits (818), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 127/727 (17%), Positives = 240/727 (33%), Gaps = 44/727 (6%)

Query: 104 KTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDL 163
              G  +  + G     ++    + P +    LL                GT   + +  
Sbjct: 135 DLRGQDSRGLQGGSRHLLAFGTWLAPQD--AQLLDSA------VATLRERGTGFRMNLRS 186

Query: 164 AALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYD 223
            A        +  G R    +       D R     L              +S+      
Sbjct: 187 LAGRYIEAQGQAVGGRALLRLRETT---DERRELIELRHTLEEAKRGLSALASLLDALPQ 243

Query: 224 IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY 283
               +SP   L   N   +       ++  L      L  S    +  Q     +     
Sbjct: 244 PIWHRSPDGALAFVNAAYAAAVEAPSREAALSHGLELLDRSAREQIVRQARRPGLPAQAL 303

Query: 284 TKKQYFGTLQN---------NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF 334
                    +           +      +      S+ A      +    T+D+ P    
Sbjct: 304 RLSAVVAGARRTLDVSESTLEAGRVGIAVDVSELESVRADLQRQMDANVRTLDQLPTAVA 363

Query: 335 VYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393
           ++     L + N ++  L        +E       +LD  + +     +           
Sbjct: 364 MFDARQRLIFHNAAYQRLWDL-DPAFLEGRPLDGEILDRLRAARKLPEQADFRSWKTDVL 422

Query: 394 IAASARL---HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450
            A  A                  T       N             E +        +  E
Sbjct: 423 AAYRAVEPTDTPWYLPDGR----TLRVVADPNPQGGLTYLYHDVSESMKLASRYDALMKE 478

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
             +    LEA  + +A+   +G +   NRA +  +      +  KP    +     ++  
Sbjct: 479 QAE---TLEALKEPVAVFGADGRLTVANRAFAATWRLDPATLAGKPHVDAVIAACRALTP 535

Query: 511 HY-----LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
                  + + ++                +  +L        L  +    LT  D++   
Sbjct: 536 DQSPWAGIRQSVTGLSETRSGHGCRLDINDGTVLDCSSQPLPLGAT---LLTFIDVTASA 592

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
             +  L+      E+ S  +  F+  VS+E+R+PLT IIGF++++ ++  G L N R  E
Sbjct: 593 NVERALTEKNDALERASQLRDTFVHHVSYELRSPLTNIIGFTQLLGDETVGAL-NERQRE 651

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           Y+ +I RS   +L I+ND+LD++ I++G + L  E + +   V  A+  ++    E  I 
Sbjct: 652 YSEHIMRSSAALLVIINDILDLASIDAGSLELQRETIDVRATVEAAVRGIEDRLAESDIG 711

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +       +  + AD + V+QI  N+LSNA+ F+  G Q+ +        E+ L V D G
Sbjct: 712 LDLDVPEGVGSVFADGKRVRQILFNLLSNAVGFSAPGQQVRVE-ARREGRELRLTVTDRG 770

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
            G+    +++    F    N+   +  G GLGL + ++ V+ + G+  I S P  GT + 
Sbjct: 771 RGIAPEVIDRVFDRFE--SNTLGTKHRGVGLGLSIVRSFVELHGGRVEIHSAPGTGTRVT 828

Query: 806 IIFPLYD 812
            +FP+  
Sbjct: 829 CLFPVEP 835



 Score = 40.4 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 35/388 (9%), Positives = 91/388 (23%), Gaps = 32/388 (8%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            W+    G L  ++      +   + +       ++ D    +    +    +       
Sbjct: 245 IWHRSPDGALAFVNAAYAAAVEAPSREAALSHGLELLDRSAREQ--IVRQARRPGLPAQA 302

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
                 + G    + +  + L               GI          RA  +R      
Sbjct: 303 LRLSAVVAGARRTLDVSESTL----EAGRV------GIAVDVSELESVRADLQRQMDANV 352

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
              +      ++   +  +    +     R+ +   +  E      ++L   +      E
Sbjct: 353 RTLDQLPTAVAMFDARQRLIFHNAAYQ--RLWDLDPAFLEGRPLDGEILDRLRAARKLPE 410

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS--------------L 311
           ++     +    +       +            +   ++  N                 L
Sbjct: 411 QADFRSWKT--DVLAAYRAVEPTDTPWYLPDGRTLRVVADPNPQGGLTYLYHDVSESMKL 468

Query: 312 SAYFDEGENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
           ++ +D       ET++    P  V+ + G L  AN +F    +             + + 
Sbjct: 469 ASRYDALMKEQAETLEALKEPVAVFGADGRLTVANRAFAATWRLDPATLAGKPHVDAVIA 528

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
               L+ + +    +           S     +  N    L  +  P          +  
Sbjct: 529 ACRALTPDQSPWAGIRQSVTGLSETRSGHGCRLDINDGTVLDCSSQPLPLGATLLTFIDV 588

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSIL 458
                 +         +E    QL    
Sbjct: 589 TASANVERALTEKNDALE-RASQLRDTF 615


>gi|237719843|ref|ZP_04550324.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
 gi|229451112|gb|EEO56903.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
          Length = 926

 Score =  319 bits (818), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 98/520 (18%), Positives = 192/520 (36%), Gaps = 31/520 (5%)

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIE 361
           L        +   D  E L        P    +Y   G L   N   L +    +  D+ 
Sbjct: 413 LDSTGSVQANRALDRSEKLFKNIFANIPAGVEIYDKDGYLIDLNNKDLEIFGVVNKSDVI 472

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                        + D    + ++ +R +    +        + +R N + +     +  
Sbjct: 473 GVNFFENPNVPQGIRDRVRNEDLVDFRLN---YSFEQAGGYYETSRSNVIELYSKVSKLY 529

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA---IINREGIILSTN 478
           +          I  ++ +      ++         I +    G A   ++NR+G  +   
Sbjct: 530 DNEGNFSGYILISIDNTERIDAMNRIRDFENFFLMISDYAKVGYAKLNLLNRKGYAI--- 586

Query: 479 RAVSKLFGYPVEDILRKPFTVF--LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
           +   K  G   +  L +   V+  +          +   +     R+  +          
Sbjct: 587 KQWYKNLGEEEDIPLSEVVAVYSQMHPEDRKRFLDFYDGVR-DGKRRHFQGEMRIRRPGT 645

Query: 537 K--LLSLRIIIK-----KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
           K     +   +                  +DI+E K+ + +L  A+  AE     KS FL
Sbjct: 646 KNEWNWVSSNVMVTNYKPEENEIEIIGINYDITELKETEAELIQARDKAEMMDRLKSAFL 705

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
           A +SHEIRTPL AI+GFS+++              EY   +  +  L+L +++D+LD+SK
Sbjct: 706 ANMSHEIRTPLNAIVGFSDLLVETEELA----ERQEYIKIVRENNELLLQLISDILDLSK 761

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709
           IE+G        V ++    + +  + + A E+ + +       +  +++D   + Q+  
Sbjct: 762 IEAGTFEFTNGDVDVNLLCEDIVRSMGMKAKEE-VELVFDGHLPVCHVISDRNRIHQVIS 820

Query: 710 NILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
           N ++NA+ FT  G  I +        E+   V DTG+G+   +L    + F ++ +    
Sbjct: 821 NFVNNAMKFTSEGS-IHVGYKLKD-GELEFYVEDTGIGIEKEQLPHIFERFVKLNSFVH- 877

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
              GTGLGL + +++V+   G+  + S   KG+      P
Sbjct: 878 ---GTGLGLSICQSIVEQLGGRIGVDSEKGKGSRFWFTIP 914



 Score = 46.6 bits (109), Expect = 0.017,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 52/154 (33%), Gaps = 10/154 (6%)

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG-YP 488
             G+  +   +    R ++       +I      G+ I +++G ++  N    ++FG   
Sbjct: 408 IVGLFLDSTGSVQANRALDRSEKLFKNIFANIPAGVEIYDKDGYLIDLNNKDLEIFGVVN 467

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG---STKEEKLLSLRIII 545
             D++   F      N P  +   +     +D R        G    T    ++ L   +
Sbjct: 468 KSDVIGVNFFE--NPNVPQGIRDRVRNEDLVDFRLNYSFEQAGGYYETSRSNVIELYSKV 525

Query: 546 KKLPFSS----CYSLTMHDISEWKQEKNKLSHAK 575
            KL  +      Y L   D +E     N++   +
Sbjct: 526 SKLYDNEGNFSGYILISIDNTERIDAMNRIRDFE 559


>gi|119509715|ref|ZP_01628860.1| Multi-sensor Signal Transduction Histidine Kinase [Nodularia
           spumigena CCY9414]
 gi|119465581|gb|EAW46473.1| Multi-sensor Signal Transduction Histidine Kinase [Nodularia
           spumigena CCY9414]
          Length = 648

 Score =  319 bits (818), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 82/411 (19%), Positives = 179/411 (43%), Gaps = 31/411 (7%)

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINK--RKMEIEVMQLCSILEATSDGIAIINREGI 473
           I      +  E +       E ++    +   ++  E  +L +++   +DG  +I+    
Sbjct: 238 IDLPLGGELGEVILSFNEMAERLERYEEQNIEELTAEKAKLETLVSTIADGAVLIDNSMQ 297

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
           ++  N    ++FG+    +        L       + H L E+ + +     E     + 
Sbjct: 298 VILVNPTARRIFGWEGIQVEGSNVLHHLPSAVQMEITHPLYEMAAGECESA-EFRIHLNE 356

Query: 534 KEEKLLSLRIIIK---KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
             ++ + + +      +       ++T+ DI+                 + +  KS F++
Sbjct: 357 PTKRTVRILLTTVLNLQRESIKGIAITVQDITR--------------EVELNEAKSQFIS 402

Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650
            VSHE+RTPL  I  F E + ++    L   +  ++   ++   + +  +VND+LD+SK+
Sbjct: 403 NVSHELRTPLFNIKSFIETL-HEYGEDLSLEQRQDFLQTVNNETDRLTRLVNDVLDLSKL 461

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710
           ESG+ + +F  V L +A+ + +   QL A +K I +      ++P +L +   + Q+  N
Sbjct: 462 ESGR-SYNFGGVDLAQAIEQTLRTYQLNARDKGITLIQEVPLDLPLVLGNYDLLLQVLAN 520

Query: 711 ILSNAIHFTPSGGQIIIST--------THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
           ++ N++ F+ SGGQ+ I          +H     V + + DTG+G+   + +     F +
Sbjct: 521 LVGNSLKFSHSGGQVAIRAYQLDTKPNSHNQQAHVRVEISDTGIGIAPEDQQAIFDRFFR 580

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
           + N +    EGTGLGL + + +++ +  + ++ S    GT       +++ 
Sbjct: 581 VEN-RVHTLEGTGLGLSIVRNIMERHRSQMHLVSEVGVGTTFWFDLTIFEE 630


>gi|326792832|ref|YP_004310653.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium lentocellum DSM 5427]
 gi|326543596|gb|ADZ85455.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium lentocellum DSM 5427]
          Length = 583

 Score =  319 bits (818), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 77/361 (21%), Positives = 157/361 (43%), Gaps = 25/361 (6%)

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
           E  +L  I E  +DG+   NR+G+++  N    ++ G        +     +        
Sbjct: 240 EKNKLEKIFEHMADGVMAFNRQGVLIHVNSVCYEMIGATSMAPNFEEVFENIGLEVN--F 297

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN 569
              L         QTL             +   + +     +    + + D+++ ++   
Sbjct: 298 EELLAGKPYEGADQTLTIGDRYLK-----MHFDVYLNAKKEADGLVVVIQDVTKQQKL-- 350

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
                          + +F+A VSHE+RTPLT +  ++E + +           + +   
Sbjct: 351 ------------DQMRKEFVANVSHELRTPLTTVKSYTETLLDGAIDE--KETAMHFLGV 396

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           +++  + +  +V DLL++S+I++ ++ L F  ++L   + E +    ++  +    +   
Sbjct: 397 MEKEADRMTALVQDLLELSRIDNKQIQLEFVRLNLKPLLEEVLEAQYIHIIKHGHQLEVG 456

Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748
           +       I  DL  ++QI  NILSNAI ++P  G + +      N  VI+ + DTG+G+
Sbjct: 457 YDKKEEYFIEGDLSRIRQILHNILSNAIKYSPEPGTLGVYMKKE-NAYVIVEITDTGMGI 515

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
              +LE+  + F ++  ++  +  GTGLGL +AK ++  + G   I S   +GT + + F
Sbjct: 516 PEEDLERIFERFYRVDKARSRKMGGTGLGLSIAKELMLLHGGDIKIESQLGQGTKVILNF 575

Query: 809 P 809
           P
Sbjct: 576 P 576


>gi|114797754|ref|YP_761588.1| non-motile and phage-resistance protein [Hyphomonas neptunium ATCC
           15444]
 gi|114737928|gb|ABI76053.1| non-motile and phage-resistance protein [Hyphomonas neptunium ATCC
           15444]
          Length = 821

 Score =  319 bits (818), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 139/699 (19%), Positives = 258/699 (36%), Gaps = 60/699 (8%)

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
            +G+ L     +A   +        G  G G +      +    +               
Sbjct: 138 PDGSRLGAAATVAGEMM--EQGALIGLSGQGDLVFLAALDARNPVIALTQASTIIPEPGS 195

Query: 212 KGHSSVEKEK------YDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
             H SV+ E              +    L+     SS     A     +      +  + 
Sbjct: 196 GAHISVQAEGHVIGFGDPALQPAASAADLQRPQVTSSGGVRAASACAPVGEGSVCVCVTV 255

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
           +  L  + D  ++ +          TL   S+     L  R         +E + +    
Sbjct: 256 DQPLFTRADLLSLAIFALLVAAPTFTLFGLSRRLS--LRQREIAIQETRNEESDRILGLV 313

Query: 326 VDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
           +      ++ +       + +     L              L  LL    +     +K  
Sbjct: 314 MRGARAGYWEWYQDASALFLSDGAADLVGLGE----GGRAPLEELLARVPVESRGYVKEG 369

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
                    +  +    T          +        +         GI  +  + +  +
Sbjct: 370 FSKARSIGWVHLTFIAQT-----SPLRWIEMRGSISTDPVTGTTVFGGIMMDATERKQAE 424

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            +++    +L + +E  +   A+ +    +L  NRA +  FG                  
Sbjct: 425 DRVKTAERRLRNAIEGFNGPFALWDTRKRLLYWNRAFALDFGLQDTLRPGMS-------- 476

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564
             +V+      +      +   + T  + +  + L +   +++            +++E 
Sbjct: 477 HDTVVIARAGAVSMERQSEEDARTTTIALRTGRWLKM---VERATPDGGLITVGIEVTEN 533

Query: 565 KQ----------------------------EKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
            +                               K S  K+ AE+ +  KS FLA +SHE+
Sbjct: 534 VRNEEELKKQKEKLRRAALDLERSEGHASELSRKYSEEKEKAERAALAKSAFLANMSHEL 593

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTPL A+IGFSE++ N+  GPLG+P Y EYA  I  SG  +LD++ND+LD++KIE+GKM 
Sbjct: 594 RTPLNAVIGFSEIMTNELAGPLGDPSYKEYAKDILMSGQHLLDMINDILDMAKIEAGKMT 653

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716
           +  +P+   + V  A+ +++  A EK I +     +N+P I AD R+++Q+ LN+LSNAI
Sbjct: 654 ISPQPIDPIDPVDAAMRMIRRKAEEKAIDLVLEAEDNLPDIDADHRAIRQMMLNLLSNAI 713

Query: 717 HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
            FT   G I +        ++   V DTG+G+   +L +  +PF Q+  ++    EGTGL
Sbjct: 714 KFTDRSGTITVRVEQR-GTDIYFGVTDTGIGIPAEDLPRLAQPFEQVAKTKDRNHEGTGL 772

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
           GL L K+  + + G+  + S   +GT +  + P+   + 
Sbjct: 773 GLSLTKSFAEMHGGRMLLSSIYGEGTTVAFVLPIGGPAA 811


>gi|116496229|ref|YP_807963.1| Signal transduction histidine kinase [Lactobacillus casei ATCC 334]
 gi|239630680|ref|ZP_04673711.1| signal transduction histidine kinase [Lactobacillus paracasei
           subsp. paracasei 8700:2]
 gi|301067831|ref|YP_003789854.1| signal transduction histidine kinase [Lactobacillus casei str.
           Zhang]
 gi|116106379|gb|ABJ71521.1| PAS/PAC sensor signal transduction histidine kinase [Lactobacillus
           casei ATCC 334]
 gi|239526963|gb|EEQ65964.1| signal transduction histidine kinase [Lactobacillus paracasei
           subsp. paracasei 8700:2]
 gi|300440238|gb|ADK20004.1| Signal transduction histidine kinase [Lactobacillus casei str.
           Zhang]
          Length = 636

 Score =  319 bits (818), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 84/383 (21%), Positives = 164/383 (42%), Gaps = 48/383 (12%)

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
             +L S+L   +DG+   +R G ++  N+          ED++       L       + 
Sbjct: 264 RRRLDSVLAHMTDGVIATDRRGNVIIINQTALNFLNTKNEDVIGVSILKLLNIAKDYTLR 323

Query: 511 HYLTEILSL--DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568
             L     L  D  + L+   +        +   +I ++  F S     +HD++E ++  
Sbjct: 324 DLLEHQTELLLDFSEQLDHELILR------VDFSLIQRETGFISGLVAVLHDVTEQQKI- 376

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI-EYA 627
                           + +F++ VSHE+RTPLT++  + E + +   G   +P+    + 
Sbjct: 377 -------------DRDRKEFVSNVSHELRTPLTSVRSYIEALSD---GAWKDPKLAPRFL 420

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV------------ 675
           N      + ++ ++NDLL +S+++SG    + E V+L+E  +  +               
Sbjct: 421 NVTQEETDRMIRMINDLLSLSRLDSGTSKFNLETVNLNEFFNYVLDRFDMMLKTDNEHTG 480

Query: 676 ---------QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726
                    Q    +KR  I+    +    +  D     Q+  NI++NAI ++P GG I 
Sbjct: 481 EAKTAQPLPQPDGQKKRYSIKREITDQDLWVEIDTDKFMQVIDNIMNNAIKYSPDGGTIT 540

Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
                 +++ VIL + D G+G+   +L K    F ++  ++  +  GTGLGL ++K +V+
Sbjct: 541 ARL-FQTHDHVILSISDQGLGIPRQDLGKIFDRFYRVDKARSRKQGGTGLGLAISKEVVE 599

Query: 787 ANMGKFYIFSTPAKGTLIEIIFP 809
           A  G+ ++ S   +G+   I  P
Sbjct: 600 ALHGRIWVDSQEGRGSTFYISLP 622


>gi|254724123|ref|ZP_05185908.1| sensory box histidine kinase YycG [Bacillus anthracis str. A1055]
          Length = 613

 Score =  319 bits (818), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 85/372 (22%), Positives = 159/372 (42%), Gaps = 25/372 (6%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +  +   E E  +L S+L   +DG+   +R+G I+  N    K+     E  L +     
Sbjct: 258 QQARSSTESERRKLSSVLSHMTDGVIATDRKGDIILLNDPAEKMLNVSRETALDQSVLEV 317

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
           L       ++H   E  S+ L  +                  +I K+   ++     ++D
Sbjct: 318 LGIQEEFTLDHLYEEPDSVLLDFSTRNEPYILRAS-----FSVIQKETGKANGLIAVLYD 372

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           ++                E+    + +F+A VSHE+RTPLT +  + E + +  +     
Sbjct: 373 VT--------------EQERIERERREFVANVSHELRTPLTTMRSYLEALTDGAWQDPNI 418

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
                +   I      ++ +VN LL +SK++S +  L  E V   +  +  I   +  + 
Sbjct: 419 APQ--FLTVIQEETERMIRLVNALLQLSKLDSTEHRLMKEWVDFTDFFNNIIDRFE-MSK 475

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV-IL 739
           E+ +  + SF+     I  D   + Q+  NI+SNA+ ++P GG +          E+  +
Sbjct: 476 EQNVSFKRSFSKKSRFIDMDTDKITQVLYNIISNALKYSPEGGTVT--YRLRDRGELLEI 533

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V D G+G+    ++K  + F ++  ++  +  GTGLGL +AK M++A+ G  +  S   
Sbjct: 534 SVSDQGMGIPKENVDKIFERFYRVDKARSRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEG 593

Query: 800 KGTLIEIIFPLY 811
           KGT I    P+ 
Sbjct: 594 KGTTIYFTLPMA 605


>gi|283851110|ref|ZP_06368394.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283573506|gb|EFC21482.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 869

 Score =  319 bits (818), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 118/712 (16%), Positives = 234/712 (32%), Gaps = 42/712 (5%)

Query: 133 IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFS----GFRGFGIVHVNR 188
           +   L      +     W          +D   L      R +        G   V +  
Sbjct: 26  VAVALLSGLLLWWTNVSWRTHFEVYPRLLDTLRLARGDVVRGYVVLERHLAGEATVPLAD 85

Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS--SLTEY 246
            +        R+D     L    +G    E       +  +    +R    ++  SLT  
Sbjct: 86  AEALFEQAALRVDDAAKVL-SADEGLPLGEGMPDVAAALAAYRQGIRSFEGLARQSLTGE 144

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL--- 303
             +++      +      E ++    E       +   ++     L       F  +   
Sbjct: 145 AGNRNRQRLEFQAAFAALENAADSLSEAIGRQGASISGRQDRANNLLFFVWLLFLAVLGG 204

Query: 304 ----SHRNHPSLSAYFDEGENLTPETVDKCPIPFFV--YSHGNLFYANPSFLLLTKYKSV 357
               +            E E       D+      +     G +   N +      Y+  
Sbjct: 205 SLAMAGARRRKAEQALAESEGKYRSLFDQGMDVILLVAEDSGRILDCNLAVTAEWGYE-C 263

Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
           +++      S LL  P   +     PV    +D    +       +  +           
Sbjct: 264 EELVGRTPASLLLATP---EAGQATPVEARYADGR-RSLVWETRLVTRDGAVR---DVSV 316

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII-----NREG 472
                       +  I  +  + + ++  +      L  + +   DG+        +   
Sbjct: 317 KTGFFTLGGRRVRLEIYRDVTERKKDETALLEREALLRGLGDNLPDGVIYCLEVRPDGGR 376

Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
             LS ++ V +LF  P   +L     +F              E+ +   R  L+      
Sbjct: 377 RFLSMSQGVERLFDLPAARVLENAGLLFDRIEAADREAFRRAEVEAAAGRAALDVQARMR 436

Query: 533 TKEEKLLSLRIIIKKLPFSSC---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
             +  +   +              +   + D++  K+ ++ L  A   AE  S  KS+FL
Sbjct: 437 AGDGSVRWCQFRAASRQAPEGGVVFDGVLFDVTAQKRTESNLRQAMAEAETASKVKSEFL 496

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
           A +SHE+RTPL  ++G  ++++                      G  ++ ++ D+LD S 
Sbjct: 497 ANISHEVRTPLNGVLGMLQLLEMSPLSEEDAAS----VATALTCGRGLVKVLADILDFSL 552

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA-DLRSVKQIA 708
           I++G++ L  +   +   V++   ++     +K I + +  ++ +P  +A D   ++QI 
Sbjct: 553 IDAGRVALCQDACDIRAVVTDVCGMLSPECGKKGISLFSEVSDAVPPFVATDAARLRQIL 612

Query: 709 LNILSNAIHFTPSGGQIIIST--THTSNE--EVILRVRDTGVGMTNYELEKAMKPFGQIP 764
            N+L NA+ FT S G + +S            ++  VRDTG+G+    +++   PF QI 
Sbjct: 613 FNVLGNAVKFT-SWGVVRLSIVPASRRGGTLHLLFTVRDTGIGIPEERMDEIFDPFTQID 671

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
            S   +  GTGLGL + K ++    G   + S P KGT         +   P
Sbjct: 672 GSLTRKFGGTGLGLGIVKRLIGLLDGHITVESEPGKGTDFTFSIRCVEAEAP 723



 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/352 (8%), Positives = 75/352 (21%), Gaps = 32/352 (9%)

Query: 93  GYLKEISEELPKTIGNYAFKMIGMRLCD--VSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150
           G + + +  +    G    +++G       ++                 + +   +T L 
Sbjct: 246 GRILDCNLAVTAEWGYECEELVGRTPASLLLATPEAGQATPVEARYADGRRSLVWETRLV 305

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
             +G    V +      +  R           I                 +     L + 
Sbjct: 306 TRDGAVRDVSVKTGFFTLGGRRVRLE------IYRDVTERKKDETALLEREALLRGLGDN 359

Query: 211 KKGHS----SVEKEKYDIF-------SQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
                     V  +    F        +    P  R+      L +     D        
Sbjct: 360 LPDGVIYCLEVRPDGGRRFLSMSQGVERLFDLPAARVLENAGLLFDRIEAADREAFRRAE 419

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
               +  ++L  Q      + +    +    + Q        +       +     +   
Sbjct: 420 VEAAAGRAALDVQARMRAGDGSVRWCQFRAASRQAPEGGV-VFDGVLFDVTAQKRTESNL 478

Query: 320 NLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
                  +                    FL    ++    +    G+  LL+   LS+ +
Sbjct: 479 RQAMAEAETASK------------VKSEFLANISHEVRTPLNGVLGMLQLLEMSPLSEED 526

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
           A          R  +   A +          +A+     +      +     
Sbjct: 527 AASVATALTCGRGLVKVLADILDFSLIDAGRVALCQDACDIRAVVTDVCGML 578


>gi|218532773|ref|YP_002423589.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium chloromethanicum CM4]
 gi|218525076|gb|ACK85661.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium chloromethanicum CM4]
          Length = 842

 Score =  319 bits (818), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 126/727 (17%), Positives = 240/727 (33%), Gaps = 44/727 (6%)

Query: 104 KTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDL 163
              G  +  + G     ++    + P +    LL                GT   + +  
Sbjct: 130 DLRGQDSRGLQGGSRHLLAFGTWLAPQD--AQLLDSA------VATLRERGTGFRMNLRS 181

Query: 164 AALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYD 223
            A        +  G R    +       D R     L       +      + +      
Sbjct: 182 LAGRYIEAQGQAVGGRALLRLRETT---DERRELIELRHTLEEANRGLSALAGLLDALPQ 238

Query: 224 IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY 283
               +SP   L   N   +       ++  L      L  S    +  Q     +     
Sbjct: 239 PIWHRSPDGALAFVNAAYAAAVEAPSREAALSHGLELLDRSAREQIVRQARRPGLPAQAL 298

Query: 284 TKKQYFGTLQN---------NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF 334
                    +           +      +      S+ A      +    T+D+ P    
Sbjct: 299 RLSAVVAGARRTLDVSESTLEAGRVGIAVDVSELESVRADLQRQMDANVRTLDQLPTAVA 358

Query: 335 VYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393
           ++     L + N ++  L        +E       +LD  + +     +           
Sbjct: 359 MFDARQRLIFHNAAYQRLWDL-DPAFLEGRPLDGEILDRLRAARKLPEQADFRSWKTDVL 417

Query: 394 IAASARL---HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450
            A  A                  T       N             E +        +  E
Sbjct: 418 AAYRAVEPTDTPWYLPDGR----TLRVVADPNPQGGLTYLYHDVSESMKLASRYDALMKE 473

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
             +    LEA  + +A+   +G +   NRA +  +      +  KP    +     ++  
Sbjct: 474 QAE---TLEALKEPVAVFGADGRLTVANRAFAATWRLDPATLAGKPHVDAVIAACRALTP 530

Query: 511 HY-----LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
                  + + ++                +  +L        L  +    LT  D++   
Sbjct: 531 DQSPWAGIRQSVTGLSETRSGHGCRLDINDGTVLDCSSQPLPLGAT---LLTFIDVTASA 587

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
             +  L+      E+ S  +  F+  VS+E+R+PLT IIGF++++ ++  G L N R  E
Sbjct: 588 NVERALTEKNDALERASQLRDTFVHHVSYELRSPLTNIIGFTQLLGDETVGAL-NERQRE 646

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           Y+ +I RS   +L I+ND+LD++ I++G + L  E + +   V  A+  ++    E  I 
Sbjct: 647 YSEHIMRSSAALLVIINDILDLASIDAGSLELQRETIDVRATVEAAVRGIEDRLAESDIG 706

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +       +  + AD + V+QI  N+LSNA+ F+  G Q+ +        E+ L V D G
Sbjct: 707 LDLDVPEGVGSVFADGKRVRQILFNLLSNAVGFSAPGQQVRVE-ARREGRELRLTVTDRG 765

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
            G+    +++    F    N+   +  G GLGL + ++ V+ + G+  I S P  GT + 
Sbjct: 766 RGIAPEVIDRVFDRFE--SNTLGTKHRGVGLGLSIVRSFVELHGGRVEIHSAPGTGTRVT 823

Query: 806 IIFPLYD 812
            +FP+  
Sbjct: 824 CLFPVEP 830



 Score = 75.4 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 41/434 (9%), Positives = 108/434 (24%), Gaps = 42/434 (9%)

Query: 181 FGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV 240
            G     R   D  A  +    +   L   ++        + +            ++N+ 
Sbjct: 71  VGWTRKERALQDELAQLRGAHDRAEMLLHSERQVLVAWAGRGEPSIVGDAGFAQDLRNQD 130

Query: 241 SSLTEYY--------------AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKK 286
               +                       +     + T  E     + +  ++       +
Sbjct: 131 LRGQDSRGLQGGSRHLLAFGTWLAPQDAQLLDSAVATLRERGTGFRMNLRSLAGRYIEAQ 190

Query: 287 QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET---VDKCPIPFFVYSHGNLFY 343
                 +   +        R    L    +E           +D  P P +  S      
Sbjct: 191 GQAVGGRALLRLRETTDERRELIELRHTLEEANRGLSALAGLLDALPQPIWHRSPDGALA 250

Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403
              +           +  ++ GL  L       D +A + ++         A + RL  +
Sbjct: 251 FVNAAYAAAVEAPSREAALSHGLELL-------DRSAREQIVRQARRPGLPAQALRLSAV 303

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
                 +L ++        +      + GI  +  +    +  ++ ++      L+    
Sbjct: 304 VAGARRTLDVS--------ESTLEAGRVGIAVDVSELESVRADLQRQMDANVRTLDQLPT 355

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
            +A+ +    ++  N A  +L+      +  +P    +     +                
Sbjct: 356 AVAMFDARQRLIFHNAAYQRLWDLDPAFLEGRPLDGEILDRLRAARKLPEQADFRSWKTD 415

Query: 524 TLEK-------ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKK 576
            L          T     + + L +             +   HD+SE  +  ++     K
Sbjct: 416 VLAAYRAVEPTDTPWYLPDGRTLRVVADPNP---QGGLTYLYHDVSESMKLASRYDALMK 472

Query: 577 IAEKESSHKSDFLA 590
              +      + +A
Sbjct: 473 EQAETLEALKEPVA 486



 Score = 40.4 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 35/388 (9%), Positives = 91/388 (23%), Gaps = 32/388 (8%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            W+    G L  ++      +   + +       ++ D    +    +    +       
Sbjct: 240 IWHRSPDGALAFVNAAYAAAVEAPSREAALSHGLELLDRSAREQ--IVRQARRPGLPAQA 297

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
                 + G    + +  + L               GI          RA  +R      
Sbjct: 298 LRLSAVVAGARRTLDVSESTL----EAGRV------GIAVDVSELESVRADLQRQMDANV 347

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
              +      ++   +  +    +     R+ +   +  E      ++L   +      E
Sbjct: 348 RTLDQLPTAVAMFDARQRLIFHNAAYQ--RLWDLDPAFLEGRPLDGEILDRLRAARKLPE 405

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS--------------L 311
           ++     +    +       +            +   ++  N                 L
Sbjct: 406 QADFRSWKT--DVLAAYRAVEPTDTPWYLPDGRTLRVVADPNPQGGLTYLYHDVSESMKL 463

Query: 312 SAYFDEGENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
           ++ +D       ET++    P  V+ + G L  AN +F    +             + + 
Sbjct: 464 ASRYDALMKEQAETLEALKEPVAVFGADGRLTVANRAFAATWRLDPATLAGKPHVDAVIA 523

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
               L+ + +    +           S     +  N    L  +  P          +  
Sbjct: 524 ACRALTPDQSPWAGIRQSVTGLSETRSGHGCRLDINDGTVLDCSSQPLPLGATLLTFIDV 583

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSIL 458
                 +         +E    QL    
Sbjct: 584 TASANVERALTEKNDALE-RASQLRDTF 610


>gi|170728964|ref|YP_001762990.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
 gi|169814311|gb|ACA88895.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
          Length = 948

 Score =  319 bits (818), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 88/389 (22%), Positives = 160/389 (41%), Gaps = 26/389 (6%)

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
             + K+++E     + ++       +  ++ +  I   NR           ++L +    
Sbjct: 257 QLLQKKELEKSHRHIKNMTRVLPVHLIYVDTKQKIQFINRHSLNWLDCESNEVLNRTCEA 316

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLT 557
            +      +M  ++ + L      T +        EE    +  +         + + + 
Sbjct: 317 IIPPKLFKLMAPFIEQTLK-GETLTFDAEFQHLNSEELNFHITQVPDIDADGKINGFFVC 375

Query: 558 MHDISEWKQEKN--------------KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
           + D ++ +  +                L  A++ AE     KS+FLA +SHEIRTP+  +
Sbjct: 376 IEDQTQTRNNEKKIEKYAQDLEFNNWALDEAREEAEATGRAKSEFLACMSHEIRTPMNGV 435

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +G   ++         +     +      S   +L ++ND+LD SKIESGK+NL     +
Sbjct: 436 LGMLSLLSRTEL----DQDQQHHLEIAQGSAKSLLTLINDILDFSKIESGKLNLESIEFN 491

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSG 722
           L + + E I  + + A EK + +    +   P  I  D   + Q+  N++ NAI FTP G
Sbjct: 492 LHQTLDELIQPLAIRAQEKSLELTLDISQIKPANITGDPGRITQVLTNLIGNAIKFTPKG 551

Query: 723 GQIIIS---TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
             II++   T   +N  +   ++DTG+GM   +LE   + F Q  NS      GTGLGL 
Sbjct: 552 S-IIVTGKLTAKNNNHRLTFSIQDTGIGMKQDKLENIFQAFSQADNSTTRHYGGTGLGLS 610

Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           +AK +     G   + S    G+   +  
Sbjct: 611 IAKHLSHLMNGDISVTSKENIGSHFVVDL 639


>gi|227819691|ref|YP_002823662.1| sensor-regulator protein [Sinorhizobium fredii NGR234]
 gi|227338690|gb|ACP22909.1| putative sensor-regulator protein [Sinorhizobium fredii NGR234]
          Length = 989

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 105/544 (19%), Positives = 206/544 (37%), Gaps = 69/544 (12%)

Query: 320 NLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLT------KYKSVDDIEIAGGLSTLLDA 372
           +   + ++     F +Y     +   N  F  L         +  D I  A         
Sbjct: 36  DSLLDGIESALEGFVLYDADDRMVAFNSRFEELFSPRVKLGMRFEDLIRSAVEQGVAPVG 95

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW----NRENSLAMTFIPFEKANQFPENM 428
               +    + +  +R+         RL+   W                +    +  E  
Sbjct: 96  ELGVEEWVARRMERHRNPGP--PFKLRLNNGTWIRISEGRTRDGGLVGAYTDITELEEQR 153

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
                  E  +    + K      QL   +E++ +G A+ + +  ++  N      F  P
Sbjct: 154 EHLEELVETTEAATERAKAAQR--QLLDAIESSLEGFALYDADDRLVVYNSRYRDFFSGP 211

Query: 489 VE----------DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS------ 532
                       +    PF + +     S ++    + +   + Q LE+           
Sbjct: 212 ERAVLPAGPFAVETPGTPFELVIRTFAESGLSPLDGQTVDEWIAQRLERHRNPRGPFNLM 271

Query: 533 TKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW-------------------------KQE 567
            K+   + +    ++            DI+E                          ++ 
Sbjct: 272 HKDGTTIRVS---ERKTSDGGTICVYSDITELEEHRHRLEELVAKRTAKLERRTEQLRKS 328

Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
           + +L  A+  AE+ S  KS+FLA +SHEIRTP+  +IG +E+++    G   + +   Y 
Sbjct: 329 REELERARDAAEQASIAKSEFLANMSHEIRTPMNGVIGIAELLE----GTELSEQQRRYV 384

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
           + I  S + ++D++ND+LD SKIE+G++ L   P  L + + + +  +   A +K + + 
Sbjct: 385 SIILHSADTLMDLINDILDFSKIEAGRLELETIPFVLRDTLGDTLQTLAKRAADKGLELA 444

Query: 688 TSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVR 742
                 +P  ++ D   ++QI +N++ NAI FT   G++++  T          +   VR
Sbjct: 445 CHIPPEVPDHLMGDPTRLRQIIVNLVGNAIKFT-ENGEVVVDVTLVGQGDHGAHLQFEVR 503

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG+G+   + E+  + F Q   S   +  GTGLGL +A  + +   G+  + S P  G+
Sbjct: 504 DTGIGIPEAQQERIFEAFAQADASTTRQYGGTGLGLAIAAQLAEKMGGRMQLDSKPGVGS 563

Query: 803 LIEI 806
           +   
Sbjct: 564 VFTF 567


>gi|32477877|ref|NP_870871.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
 gi|32448434|emb|CAD77949.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
          Length = 697

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 100/558 (17%), Positives = 207/558 (37%), Gaps = 32/558 (5%)

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
               +          I+  +      F + +   +             L       E   
Sbjct: 8   PFAPTPWHWHLSSRCIDSPRRIPFFRFSSSRATHRTRSLRRQSTTEERLRLAVSVAEFGI 67

Query: 323 PETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
            E      +            A+    +L    +  ++                    +K
Sbjct: 68  IEIDYLSGVAV----------ADEKAAVLFGLPANQEVTREEVHRRFHPDDVFDIERKVK 117

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE---KANQFPENMPQNGIEPEDVD 439
             +            A  H +   +     ++        + +     +       +  +
Sbjct: 118 QSLEPDGTGEF----ATQHRVVHPKGEVRWVSVRKRIFFDEVDGKRVPVSGMVAAIDITE 173

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP-FT 498
            +  +  +     +L    E T  G   ++        +  + ++FG  + +   +    
Sbjct: 174 QKETEHNIRTGETRLKLAAEVTGFGTYDLDIRSSDCVWSDEIYRIFGIEIGETFTRTAMF 233

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS------ 552
             +     +        +   D + + +        + ++  +      L          
Sbjct: 234 DRVHPEDRARYRQLFLSLSGKDAKHSFKLEHRIVRPDGEVRWIINSGLLLFDERHPGSIP 293

Query: 553 -CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
                TM DI++ K  +  L  A+  AE  +  + +FLA +SHEIRTP+ AI+G +++++
Sbjct: 294 ERVIGTMQDITDRKLFEQSLQDARDAAEAANRSRGEFLANMSHEIRTPMAAILGHADILR 353

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
           +     L +P  ++  + I R+GN +L I+ND+LD+SKI++GK+ +  +PV  D  V+E 
Sbjct: 354 DH----LRDPDNLQVVDTIRRNGNFLLGIINDILDLSKIDAGKLEVAKQPVRPDAIVAEV 409

Query: 672 ISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
            SL+ + A EK++ ++  F   +P +   D   ++QI +N++ NAI FT  G  + ++  
Sbjct: 410 RSLMDVRAAEKKLPLQIEFDGPVPAVIHTDAIRIRQILVNLVGNAIKFTDEG-VVRLTVR 468

Query: 731 HTSNEE-VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
                  +   V DTG+G+ + E++K   PF Q+ N+      GTGLGL +   +  A  
Sbjct: 469 FDEANSCLQFHVIDTGIGIQSDEIDKLFDPFVQVDNTSTRSFGGTGLGLAICHRLAHALN 528

Query: 790 GKFYIFSTPAKGTLIEII 807
           G+  + S    G+   + 
Sbjct: 529 GQVDVESQYGVGSRFTLS 546



 Score = 48.1 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/193 (9%), Positives = 55/193 (28%), Gaps = 10/193 (5%)

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459
           L ++ +    +     +     +                    + R+      +L   + 
Sbjct: 2   LLSLHYPFAPTPWHWHLSSRCIDSPRRIPFFRFSSSRATHRTRSLRRQSTTEERLRLAVS 61

Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGYPV-EDILRKPFTVFLEQNTPSVMNHYLTEILS 518
               GI  I+    +   +   + LFG P  +++ R+        +    +   + + L 
Sbjct: 62  VAEFGIIEIDYLSGVAVADEKAAVLFGLPANQEVTREEVHRRFHPDDVFDIERKVKQSLE 121

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--------SCYSLTMHDISEWKQEKNK 570
            D              + ++  + +  +             S     + DI+E K+ ++ 
Sbjct: 122 PDGTGEFATQHRVVHPKGEVRWVSVRKRIFFDEVDGKRVPVSGMVAAI-DITEQKETEHN 180

Query: 571 LSHAKKIAEKESS 583
           +   +   +  + 
Sbjct: 181 IRTGETRLKLAAE 193


>gi|254411811|ref|ZP_05025587.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
 gi|196181533|gb|EDX76521.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
          Length = 562

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 96/464 (20%), Positives = 201/464 (43%), Gaps = 22/464 (4%)

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI------AASARLHTIQWNRENSLA 412
                 G+  ++         + +   + R+D+              LH      EN   
Sbjct: 49  AFPELVGMEGIMMDILAGRQISFQLAGIVRADQHHTDQAPDSPFYFDLHICHHQDENENY 108

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG 472
           +  +     +     M Q  +  +  +T +    +      +  I+ + +D + +    G
Sbjct: 109 LILLF---KDVTEWMMLQQKLIQKSNETNLLLSALTHSKNYIDKIISSMADALLVTTASG 165

Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
            I + NRA   LFGY +++++ +P T  ++        ++L    S D     +      
Sbjct: 166 DIKTANRAAQTLFGYKIDELVGQPITKIIKNQEFLNNLNHL----SPDSSTFQDIELNCL 221

Query: 533 TKEEKLLSLRII----IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
           TK+ + +++       I  L  S  +     D+++ K  + ++  A +  ++ +  KS F
Sbjct: 222 TKQGETVAVAFSCSALITDLEGSLNFVYVGRDLTQRKLLEAEMLQALEREKELTELKSRF 281

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
           ++  SHE R PLTA+   +E +  Q        + +++ N I  S N +  +++D+L ++
Sbjct: 282 ISMTSHEFRVPLTAVYSSTE-LLEQYSHNWAEEKKLKHFNRIKDSVNRMTTLLDDVLIVN 340

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIA 708
           K ESGK+  + +P++L++   + +  ++L    K+  I    +    +   D + ++ I 
Sbjct: 341 KAESGKLEFNPQPLNLNQLCQDLVEDIELGI-GKQHEISWINSGRASKACMDEKLLRHIL 399

Query: 709 LNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
            N+L+NA+ ++P G  +  +       EVI  ++D G+G+   + ++  + F +  N   
Sbjct: 400 TNLLTNAVKYSPLGSTVQFNCHCREQ-EVIFEIKDQGIGIPPEDQKRLFESFHRAKNVGN 458

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
              +GTGLGL + K  VD + GK  + S    GT  ++  PL D
Sbjct: 459 --IQGTGLGLSIVKKSVDLHGGKLAVHSEVGVGTTFKVTLPLGD 500


>gi|306821071|ref|ZP_07454689.1| sensor histidine kinase [Eubacterium yurii subsp. margaretiae ATCC
           43715]
 gi|304550907|gb|EFM38880.1| sensor histidine kinase [Eubacterium yurii subsp. margaretiae ATCC
           43715]
          Length = 598

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 73/370 (19%), Positives = 158/370 (42%), Gaps = 26/370 (7%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG--YPVEDILRKPFTVFLE 502
           +++  E  +L +I+    +G+  I+  G I+  N     +      V+ ++ K +   + 
Sbjct: 251 KELSSEKSKLNAIIYHMQNGLVAIDNFGKIIHCNANFVNIINSNQNVDALINKSYDDVIS 310

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHD 560
             T  +    +    S +         +     +K  ++   + K    +     +   D
Sbjct: 311 TFTDELSFSMIIRNYSNNKS-----EDITLNINDKYYTVSSAVFKEENGALAGIIVVFQD 365

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I+E ++ +                + DF+A VSHE++TP+T+I  ++E + +        
Sbjct: 366 ITESRRLEE--------------LRRDFVANVSHELKTPITSIKSYTETLLDGAID--DK 409

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
                +   I+   + + +I+ DLL +S ++  K +       ++    + I  + LYA+
Sbjct: 410 DTATSFLTVINNESDRMNNIIKDLLQLSHMDYKKESWDLALTDINALTKDCILKMTLYAD 469

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
            K   I    +N+   ++ D    +Q+ +N++SNAI +T   G II+ T      +  + 
Sbjct: 470 MKNQKIVGEISNDKLPVIIDKSKFEQVIINLVSNAIKYTNDNGTIIVKTFVND-GKCHIS 528

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V D G+G+   +L      F ++   +     GTGLGL + ++++  + G   + ST  +
Sbjct: 529 VTDDGIGIPEKDLPFIFDRFYRVDKGRSRSLGGTGLGLSICESIIAEHGGTISVTSTFGE 588

Query: 801 GTLIEIIFPL 810
           G+   +I P+
Sbjct: 589 GSTFTVIIPM 598


>gi|156934002|ref|YP_001437918.1| hypothetical protein ESA_01828 [Cronobacter sakazakii ATCC BAA-894]
 gi|156532256|gb|ABU77082.1| hypothetical protein ESA_01828 [Cronobacter sakazakii ATCC BAA-894]
          Length = 893

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 100/503 (19%), Positives = 183/503 (36%), Gaps = 37/503 (7%)

Query: 335 VYSHG-NLFYANPSFLLLTKYKSVDDIEIAG--GLSTLLDAPKLSDNNAIKPVMLYRSDR 391
           VY     L   N              +E A    L+          ++  +  ++     
Sbjct: 19  VYDKDERLVAWNAQVSRFYPGIEAHLVEGAALSALAQSFIHAGYQTDSRSRDTLVASL-- 76

Query: 392 TCIAASARLHTIQWNRE-NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450
                   +   + +       +        +Q   +     +  +       +   ++ 
Sbjct: 77  --------IANCRHDGHCEVRQLQQRRLFIQHQRTADGGIISLHTDISALDNVQNTRQLL 128

Query: 451 VMQLCSILEATSDGI----AIINREGIILSTNRAVSKLFGYPVEDILR--KPFTVFLEQN 504
                   E+   GI       +     L  N A   L G P   +          +  +
Sbjct: 129 HDDFLPAAESIHIGIWDWQVTTDA----LHLNDAFLNLLGEPRGQLQHTSHFLLSLIHPD 184

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR-----IIIKKLPFSSCYSLTMH 559
              ++   +       +    E       +  + L +      I +           T+ 
Sbjct: 185 DRDLLKSAMQCASEHQMP-VFECEIRVQHRSGQWLWMLLSGQIIALTVTGEIERLIGTLQ 243

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           DI+  K+ +     A   A   +  KS FLA +SHEIRTP+  I+G +++  +       
Sbjct: 244 DITRRKEAELISREAANAARAANEAKSAFLANMSHEIRTPMNGILGMTQLCLDTDL---- 299

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
           N    EY   +  S   +L I++D+LD SKIE+GK+ LH E V+L   +   +  +   A
Sbjct: 300 NSEQREYLTLVMSSAQSLLHIIDDILDFSKIEAGKIVLHEEYVALRPFIQSLVRPLMPLA 359

Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN-EEV 737
           +EK+I +       +P+ +  D+  ++Q+  N+LSNA+ FT  G +I+++        E 
Sbjct: 360 SEKQIELLVEVDERVPQTLRVDVVRLRQVLTNLLSNALKFTHQG-EILLAVAPGPQPGEW 418

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
             RVRD+G+G+   + +   + F Q   S   R  GTGLGL ++  +V    G   + S 
Sbjct: 419 RFRVRDSGIGIPPEKQQVIFEAFSQADTSTTRRYGGTGLGLTISARLVAMMGGLLTVASE 478

Query: 798 PAKGTLIEIIFPLYDTSHPHDCI 820
             +G+      PL   +     I
Sbjct: 479 ANQGSEFSFTLPLQSAAQATPEI 501


>gi|168819602|ref|ZP_02831602.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|205343409|gb|EDZ30173.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|320087774|emb|CBY97538.1| sensor histidine kinase FexB [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
          Length = 778

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 85/435 (19%), Positives = 177/435 (40%), Gaps = 17/435 (3%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L +          +L  +Q     +     I   +  +         ++ E
Sbjct: 81  EESRQRLSRLVQKLEEMRERDLKL-NVQLKDNIAQLNQEIADREKAEAELQETFEQLKVE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             +    + ++E +   L S L+A+ D +   N +      NRA+  L G   + ++   
Sbjct: 140 IKEREEAQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCY 554
                       +     ++   ++  T E+        +    +R +    ++      
Sbjct: 200 PEDVYSPEAAEKVIETDEKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGL 259

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+        +   E+ S  K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 260 MGFGRDITERKR-------YQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTD 312

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     +Y   I  S   + +I ND++D+ K+E  K+ L  +PV     +++  +L
Sbjct: 313 LTA----EQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFMADLENL 368

Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
             L A +K +         +P  ++ D   ++QI  N++SNA+ FT  G Q+ +   +  
Sbjct: 369 SGLQAQQKGLRFVLEPTLPLPHKVITDGTRLRQILWNLISNAVKFTQQG-QVTVRARYDE 427

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMGKF 792
            + +   V D+G+G+   E +K    + Q+ +S   +   GTG+GL +++ +     G  
Sbjct: 428 GDMLHFEVEDSGIGIPQDEQDKIFAMYYQVKDSNGGKPATGTGIGLAVSRRLAKNMGGDI 487

Query: 793 YIFSTPAKGTLIEII 807
            + S P KG+   + 
Sbjct: 488 TVSSLPGKGSTFTLT 502


>gi|85705883|ref|ZP_01036979.1| sensor histidine kinase/response regulator [Roseovarius sp. 217]
 gi|85669471|gb|EAQ24336.1| sensor histidine kinase/response regulator [Roseovarius sp. 217]
          Length = 646

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 105/448 (23%), Positives = 197/448 (43%), Gaps = 24/448 (5%)

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
           A +      ++R      A L           A+         +      ++  +    D
Sbjct: 8   AEERRARLAAERLLEQKQAELQAANRKLGK-HALALSHEIHETRAEVQTVRDENQRVKSD 66

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF--------GYPVED 491
                +K+EI   +L   +E   DG A  + +  +++ N A   +F        G    +
Sbjct: 67  LNDAYQKVEIAERRLWHSIETIQDGFAFFDADSRMIAANNAYLAVFDGLEAVKPGVSYIE 126

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
           IL+      +        + +  ++L        E   +        + L   I +    
Sbjct: 127 ILQFITEEGVVNIGALKPHEWREKMLDRWQSFAPEPEVI-RLWNGHYIKL---IDQRGHG 182

Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
                   +I++  + + +L+ A++ AE  +  KS FLA +SHEIRTP+  ++G +E++ 
Sbjct: 183 GDMVSLALNITDTIRHEKELTEARRRAEAANRAKSSFLANMSHEIRTPMNGVVGMAELLM 242

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
                         +A+ I  SG  +L I+ND+LD SKIE+ K+ LH EP  L+  + E 
Sbjct: 243 ETDL----TEEQRLFASTIKTSGEALLVIINDVLDYSKIEAEKLVLHAEPFDLERCIHEL 298

Query: 672 ISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
           ++L+Q+ A +K + +   +   +P R + D   ++QI  N+L NA+ FT SG  ++  T 
Sbjct: 299 VTLMQVNARDKGLELLVDYDLFLPTRFVGDPGRIRQIMTNLLGNAVKFTESGHVLVRVTG 358

Query: 731 HTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
              + E    V + V DTG+G+   +++     F Q+ + +  + EGTGLGL +++ ++ 
Sbjct: 359 VHPDAEGRASVHVTVEDTGIGIPPDKIDHIFGEFNQVDDERNRKFEGTGLGLAISQKLIR 418

Query: 787 ANMGKFYIFSTPAKGTL--IEIIFPLYD 812
              GK ++ S P KG+     +  P+ +
Sbjct: 419 LMGGKIWVDSEPGKGSTFGFSVSLPVAE 446


>gi|317153381|ref|YP_004121429.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316943632|gb|ADU62683.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 867

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 79/384 (20%), Positives = 167/384 (43%), Gaps = 17/384 (4%)

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRK 495
            +     + +++    +   ++E+  +   I     G I+  + +   ++G   + +   
Sbjct: 343 VMQMTQRESQIKESEERFRQLVESIHEFYWISELANGRIIYASPSYEAIWGRSRQSLHDN 402

Query: 496 P--FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS- 552
           P  F + ++      +    + +    +    E         E+ +  +    +      
Sbjct: 403 PETFFLAIKPEDRLSVIEAFSALRVEGIEVDEEFRITLPDGGERWIRAQAFPVRDERGGS 462

Query: 553 -CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
              +    DI+E K  +  L  AK  AE  +  K++FL  +SHE+RTPL  I+G  ++ +
Sbjct: 463 VRQAGVAEDITERKATQQALMEAKHSAEAANQSKTEFLTNISHELRTPLNGILGMLQLTR 522

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
             R  P       EY +    S  ++L+++ND+L+I++IE+G++ L   P S +E +   
Sbjct: 523 ETRLKP----EQAEYIDTAISSSKVLLNVINDILNIAQIEAGRLTLLDAPFSTNEVLETI 578

Query: 672 ISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
               +     K + +        P  ++ D   ++QI  N+L N++ FT  G  I +  +
Sbjct: 579 YRFFRHSTEAKGVELTMDMEPGFPKTLVGDEVRIRQILFNLLGNSVKFTDQG-HISVHAS 637

Query: 731 ------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
                       V+L ++DTG+G+ + +++   + F Q+  +   + +GTGLGL + +++
Sbjct: 638 ILPVTPRPGRVTVLLVIKDTGIGIPSDKIDYVFESFTQVDGTYTRQYQGTGLGLGIVRSL 697

Query: 785 VDANMGKFYIFSTPAKGTLIEIIF 808
           V +  G   + S    GT I +  
Sbjct: 698 VWSMNGTIAVDSETGMGTTIYVTL 721



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/176 (11%), Positives = 55/176 (31%), Gaps = 10/176 (5%)

Query: 276 HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF-DEGENLTPETVDKCPIPFF 334
            T   N + ++    T    +    ++       +       E E    + V+     ++
Sbjct: 313 QTARGNYHHQRSNKQTFAELAIIEHKFDEMVMQMTQRESQIKESEERFRQLVESIHEFYW 372

Query: 335 VYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN-NAIKPVMLYRSDR 391
           +    +G + YA+PS+  +         +      T   A K  D  + I+     R + 
Sbjct: 373 ISELANGRIIYASPSYEAIWGRSRQSLHDNP---ETFFLAIKPEDRLSVIEAFSALRVEG 429

Query: 392 TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
             +        I         +    F   ++   ++ Q G+  +  + +  ++ +
Sbjct: 430 IEVDEE---FRITLPDGGERWIRAQAFPVRDERGGSVRQAGVAEDITERKATQQAL 482



 Score = 42.7 bits (99), Expect = 0.29,   Method: Composition-based stats.
 Identities = 22/263 (8%), Positives = 56/263 (21%), Gaps = 13/263 (4%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMR---LCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
           A+G +   S       G     +          +     +        L         + 
Sbjct: 377 ANGRIIYASPSYEAIWGRSRQSLHDNPETFFLAIKPEDRLSVIEAFSALRVEGIEVDEEF 436

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
            +   +G      I   A P+          R  G+          +             
Sbjct: 437 RITLPDGG--ERWIRAQAFPVRDERG--GSVRQAGVAEDITERKATQQALMEAKHSAEAA 492

Query: 208 HEIKKGHSSVEKEKYD-----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
           ++ K    +    +       I          R+K + +   +       VL      +L
Sbjct: 493 NQSKTEFLTNISHELRTPLNGILGMLQLTRETRLKPEQAEYIDTAISSSKVLLNVINDIL 552

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
              +                   +  +   +++++     L+    P         E   
Sbjct: 553 NIAQIEAGRLTLLDAPFSTNEVLETIYRFFRHSTEAKGVELTMDMEPGFPKTLVGDEVRI 612

Query: 323 PETV-DKCPIPFFVYSHGNLFYA 344
            + + +           G++   
Sbjct: 613 RQILFNLLGNSVKFTDQGHISVH 635


>gi|268318297|ref|YP_003292016.1| PAS/PAC sensor hybrid histidine kinase [Rhodothermus marinus DSM
           4252]
 gi|262335831|gb|ACY49628.1| PAS/PAC sensor hybrid histidine kinase [Rhodothermus marinus DSM
           4252]
          Length = 857

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 115/625 (18%), Positives = 219/625 (35%), Gaps = 21/625 (3%)

Query: 198 KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257
           + L +    +       +           +    P  R   +    T +   +D      
Sbjct: 88  RTLVQSLRAVLWEADARTFRFTYVSPQAEELLGYPVHRWLEEPDFWTAHIHPEDRDRAVA 147

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
                T               +      +     + +               +       
Sbjct: 148 YCRETTDRGEDHDFTYRMICADGRVVWVRDIVTVVPDEQGRPHRLRGLLLDITEEQETRR 207

Query: 318 G----ENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
                     + +   PI   VY  G + YANP+   L   +  +D+        +  + 
Sbjct: 208 ELEVFRQRYQDLISNNPIATGVYCRGQVVYANPAMARLFGAERPEDLLGKTATDLIHPSN 267

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
             +     + V+  R        S     IQ     S  + F        +         
Sbjct: 268 LEAALENARKVVERRE-----PVSYGRGRIQRLDGRSAIVDFRGVPIT--WEGARAVLFF 320

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
             +  +     R++     Q  ++ E     + +  R+   L  N A  +L GY  E++ 
Sbjct: 321 MWDVSEQLRTARRLAEREAQYQALFENAPAPMYVR-RDRQFLLVNPAFVRLTGYTAEELT 379

Query: 494 --RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLP 549
                    +   +  V+   L       L            K+ K + +  I    +  
Sbjct: 380 APGFDAMRLIAPQSIPVVQERLAR-RRQGLPVPPRYELWIRRKDGKEILVEAISINIRWE 438

Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                     D+S   + +  L  A++ AE+ S  KS FL  ++HEIRTP++ I+G++++
Sbjct: 439 GEPAVLGFFRDLSAQHEAETYLQQARRQAEEASQLKSRFLELMTHEIRTPISTILGYADL 498

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           ++++    +  P  +E+ + I  SG  +L  ++D+LD+S +E+ +  L  E V+L+E   
Sbjct: 499 LRDELADRIP-PELLEFIDVIRESGRRLLGTLSDVLDLSLLETQRRRLETEAVNLNELAR 557

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
              +     A  K +   T       R++AD  ++ +   NI+ NA+ FT SG  + +  
Sbjct: 558 RLETDFAPMARAKGLRWETEVPEQPVRVVADEEALHRALANIVHNAVKFTESG-TVQLRV 616

Query: 730 THTSNEEVILRVRDTGVGMTNYELEK-AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                 E  ++VRDTG GM          +PF Q         EG GLG+ +A+  V+A 
Sbjct: 617 G-QHGGEGWIQVRDTGPGMDPAFARTGLFEPFRQESEGTNRHHEGAGLGMTVARRFVEAM 675

Query: 789 MGKFYIFSTPAKGTLIEIIFPLYDT 813
            G+  + + P +GT + +  PL + 
Sbjct: 676 RGRIEVDTAPGRGTTVTVHLPLLEA 700



 Score = 97.0 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 39/377 (10%), Positives = 98/377 (25%), Gaps = 17/377 (4%)

Query: 86  TWNIDA-HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144
            W  DA       +S +  + +G    + +       + I   D +  +    +  +   
Sbjct: 98  LWEADARTFRFTYVSPQAEELLGYPVHRWLEEPDFWTAHIHPEDRDRAVAYCRETTDRGE 157

Query: 145 GKTTLWPI---EGTNLYVPIDLAALPIYSRNREFSGFRGFGI-VHVNRVDNDPRALGKRL 200
                + +   +G  ++V   +  +P           RG  + +   +       + ++ 
Sbjct: 158 DHDFTYRMICADGRVVWVRDIVTVVP--DEQGRPHRLRGLLLDITEEQETRRELEVFRQR 215

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
            +     + I  G     +  Y   +        R ++ +        H  ++    +  
Sbjct: 216 YQDLISNNPIATGVYCRGQVVYANPAMARLFGAERPEDLLGKTATDLIHPSNLEAALENA 275

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTL----QNNSKESFEYLSHRNHPSLSAYFD 316
               E              L+  +    F  +    +      F           +    
Sbjct: 276 RKVVERREPVSYGRGRIQRLDGRSAIVDFRGVPITWEGARAVLFFMWDVSEQLRTARRLA 335

Query: 317 EGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
           E E       +  P P +V         NP+F+ LT Y + +          L+    + 
Sbjct: 336 EREAQYQALFENAPAPMYVRRDRQFLLVNPAFVRLTGYTAEELTAPGFDAMRLIAPQSIP 395

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
               ++  +  R     +     L   + + +  L        +    P      G   +
Sbjct: 396 ---VVQERLARRRQGLPVPPRYELWIRRKDGKEILVEAISINIRWEGEP---AVLGFFRD 449

Query: 437 DVDTRINKRKMEIEVMQ 453
                  +  ++    Q
Sbjct: 450 LSAQHEAETYLQQARRQ 466


>gi|16804538|ref|NP_466023.1| two-component sensor histidine kinase [Listeria monocytogenes
           EGD-e]
 gi|47096093|ref|ZP_00233694.1| histidine kinase [Listeria monocytogenes str. 1/2a F6854]
 gi|224499856|ref|ZP_03668205.1| two-component sensor histidine kinase [Listeria monocytogenes
           Finland 1988]
 gi|224503259|ref|ZP_03671566.1| two-component sensor histidine kinase [Listeria monocytogenes FSL
           R2-561]
 gi|254900362|ref|ZP_05260286.1| two-component sensor histidine kinase [Listeria monocytogenes
           J0161]
 gi|254913399|ref|ZP_05263411.1| two-component sensor histidine kinase [Listeria monocytogenes
           J2818]
 gi|254937780|ref|ZP_05269477.1| two-component sensor histidine kinase [Listeria monocytogenes
           F6900]
 gi|16411988|emb|CAD00578.1| two-component sensor histidine kinase [Listeria monocytogenes
           EGD-e]
 gi|47015554|gb|EAL06486.1| histidine kinase [Listeria monocytogenes str. 1/2a F6854]
 gi|258610383|gb|EEW22991.1| two-component sensor histidine kinase [Listeria monocytogenes
           F6900]
 gi|293591405|gb|EFF99739.1| two-component sensor histidine kinase [Listeria monocytogenes
           J2818]
          Length = 591

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 84/369 (22%), Positives = 173/369 (46%), Gaps = 31/369 (8%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           +++    +L +I++    G+ +IN +  ++ TNR + ++ G    +I  KPF   ++   
Sbjct: 246 EIKQNEQRLNAIVQNLVSGVMLINVDKQVIMTNRTMYQILG--ETEITGKPFYEVIKSFA 303

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISE 563
            S +        + + +   +K  +     E +L   +              L +HDI++
Sbjct: 304 LSQLIEA-----TFETKTIQQKEIILYFPREMILDASVSPILGENGEITGIILLLHDITQ 358

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            +  +N               +S+F+  VSHE++TP+TA+ GF+E + +   G + +   
Sbjct: 359 IRHLENV--------------RSEFVTNVSHELKTPVTALKGFAETLLD---GAMYDEML 401

Query: 624 -IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             ++   I    + +  ++ D+L +S+IE   +  + E V +DE + ++   +   A EK
Sbjct: 402 LKKFLTIIKEESDRLHRLIMDILALSRIEQNPVPENVELVEVDEVIEQSARTIFEMATEK 461

Query: 683 RILIRTSFANNIPRI--LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
            I +       IP +    D   ++QI +N+LSNAI++TP  G++ +        EVI+ 
Sbjct: 462 NIQVII-PEKTIPSVTIETDRDKLQQILINLLSNAINYTPVDGKVEVKL-IEQEAEVIIE 519

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V D G+G+   ++++  + F ++  ++     GTGLGL + K +V+   G+  + S    
Sbjct: 520 VTDNGIGIPAKDIDRVFERFYRVDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEV 579

Query: 801 GTLIEIIFP 809
           G+   +  P
Sbjct: 580 GSTFRVTLP 588


>gi|268325504|emb|CBH39092.1| putative histidine kinase [uncultured archaeon]
          Length = 476

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 81/246 (32%), Positives = 137/246 (55%), Gaps = 4/246 (1%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  +   +L+ A +  ++    KSDF++ VSHE++TPLTA+   ++V++      +    
Sbjct: 230 DLIRTNKELALANERLKELDRLKSDFVSMVSHELKTPLTAMRTSAQVLE---AAGIATET 286

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             E  + I R+ +   ++VNDLLD+S+IESG+M L FE VSLD  ++++I  V+  A+EK
Sbjct: 287 KREMLDIILRNIDRQTNLVNDLLDLSRIESGRMKLKFESVSLDSLIADSIESVKHAASEK 346

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
            I +       +  +  D   + Q+ +N+L+NAI FTP  G+I I      N +V ++V 
Sbjct: 347 GIKLNVKLPEGLSSVKGDREKLTQVVINLLNNAIKFTPRSGEISIK-AIELNGQVEVKVS 405

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG+G+   +LEK    F Q+ ++      GTGLGL + K +++A+ G  +  S   KG+
Sbjct: 406 DTGIGIPPEDLEKVFDKFYQVDSTLTREAGGTGLGLAICKGIIEAHNGHIWAESELGKGS 465

Query: 803 LIEIIF 808
                 
Sbjct: 466 TFVFTL 471


>gi|255025954|ref|ZP_05297940.1| two-component sensor histidine kinase [Listeria monocytogenes FSL
           J2-003]
          Length = 591

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 84/369 (22%), Positives = 172/369 (46%), Gaps = 31/369 (8%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           +++    +L +I++    G+ +IN +  ++ TNR + ++ G    +I  KPF   ++   
Sbjct: 246 EIKQNEQRLNAIVQNLVSGVMLINVDKQVIMTNRTMYQILG--ETEITGKPFYEVIKSF- 302

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISE 563
              ++  +         Q  +K  +     E +L   +              L +HDI++
Sbjct: 303 --ALSQLIEGTFETKTIQ--QKEIILYFPREMILDASVSPILGENGEITGIILLLHDITQ 358

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            +  +N               +S+F+  VSHE++TP+TA+ GF+E + +   G + +   
Sbjct: 359 IRHLENV--------------RSEFVTNVSHELKTPVTALKGFAETLLD---GAMYDEML 401

Query: 624 -IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             ++   I    + +  ++ D+L +S+IE   +  + E V +DE + ++   +   A EK
Sbjct: 402 LKKFLTIIKEESDRLHRLIMDILALSRIEQNPVPENVELVEVDEVIEQSARTIFEMATEK 461

Query: 683 RILIRTSFANNIPRI--LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
            I +       IP +    D   ++QI +N+LSNAI++TP  G++ +        EVI+ 
Sbjct: 462 NIQVII-PEKTIPSVTIETDRDKLQQILINLLSNAINYTPVDGKVEVKL-IEQEAEVIIE 519

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V D G+G+   ++++  + F ++  ++     GTGLGL + K +V+   G+  + S    
Sbjct: 520 VTDNGIGIPAKDIDRVFERFYRVDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEV 579

Query: 801 GTLIEIIFP 809
           G+   +  P
Sbjct: 580 GSTFRVTLP 588


>gi|242277606|ref|YP_002989735.1| PAS sensor protein [Desulfovibrio salexigens DSM 2638]
 gi|242120500|gb|ACS78196.1| PAS sensor protein [Desulfovibrio salexigens DSM 2638]
          Length = 2133

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 122/595 (20%), Positives = 225/595 (37%), Gaps = 47/595 (7%)

Query: 257  EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT----LQNNSKESFEYLSHRNHPSLS 312
            E++      +  L E    H +    ++     G       + S       +      L+
Sbjct: 1270 EEWGASAKVQRLLNEYPQLHKVTETGFSHSDTTGENGPHSLDISAVLKASQAISGEIVLN 1329

Query: 313  AYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
               D+   +  E          + +   L   + +F+      +            L   
Sbjct: 1330 RLLDKLMRIVIENAGAQKATLLLNNKNRLELTSHAFVSEHGITTKT---NPDPDQELYCK 1386

Query: 373  PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ----------------WNRENSLAMTFI 416
              ++     K  ++ R   T    S   + I+                      L     
Sbjct: 1387 SIVNYVLRSKDNIVLRDAGTQGPFSIDSYIIRNKPKSILAMPVINQQLMRGVLYLENNLS 1446

Query: 417  PFEKANQFPENMPQNGIEPEDVDT-RINKRKMEIEVMQLCSILEATSDGIAII--NREGI 473
            P    +   E +     +             +     Q  ++LE+ + G+     + +G+
Sbjct: 1447 PGVFTDDRLEVLNLLCSQAAISIQNARLYSDLRDSETQHRTLLESINVGVFRAEADADGL 1506

Query: 474  ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
            +L  NRA++++FGY   +  RK     L    P +    L E+L   +    ++      
Sbjct: 1507 LLKANRALAEMFGYRDWNEFRKTQVRTLYIE-PQMHQKILDELLEGGI--VRDREINMRK 1563

Query: 534  KEEKLLSLRIIIKKLPF---SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
            ++   + + +           +C    + DI+E ++   +    K  A   +  KSDFLA
Sbjct: 1564 QDGTPIWVNMTASMERNGNKENCLEGVLEDITEKRKA-QEFEKEKVAANAANKAKSDFLA 1622

Query: 591  RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650
             +SHEIRTP+ AI+G ++++   R   +       Y      +G  +L ++ND+LD+SKI
Sbjct: 1623 SMSHEIRTPMNAILGMADLLWESRLSKI----QRNYVKIFRNAGENLLLLINDILDLSKI 1678

Query: 651  ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIAL 709
            E+G+++L     +L+E   E  S+  L A  K +         +PRI+  D   ++QI +
Sbjct: 1679 EAGQIDLEEIDFNLEELFEEIGSIFALRAQIKSVDFCWYIDPEVPRIITGDPTRLRQIIV 1738

Query: 710  NILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
            N++ N++ FT  G  II     T N  +   V+DTGVG+   ++      F Q  +S   
Sbjct: 1739 NLVGNSLKFTEKG-TIIFEAGITENGYLRFLVKDTGVGIPVEKMNSIFDTFSQADSSTTR 1797

Query: 770  RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII----FPLYDTSHPHDCI 820
               GTGLGL +   MV++  G  ++ ST  +G          FP+     P + I
Sbjct: 1798 NYGGTGLGLSICSRMVESMGGGIFVSSTEGEGADFSFTINAKFPI----QPEEYI 1848



 Score = 45.0 bits (105), Expect = 0.053,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 54/157 (34%), Gaps = 20/157 (12%)

Query: 50   EQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNY 109
             Q+  + QN    S+    ++++  + + I   V F    DA G L + +  L +  G  
Sbjct: 1463 SQAAISIQNARLYSDLRDSETQHRTLLESINVGV-FRAEADADGLLLKANRALAEMFGY- 1520

Query: 110  AFKMIGMRLCDV----SDILHIDPNNH---IGDLLKRQNTWYGKTTLWPIEGTNLYVPID 162
                      +        L+I+P  H   + +LL+       +  +   +GT ++V + 
Sbjct: 1521 ------RDWNEFRKTQVRTLYIEPQMHQKILDELLEGGIVRDREINMRKQDGTPIWVNMT 1574

Query: 163  LAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199
             +     ++     G     ++         +   K 
Sbjct: 1575 ASMERNGNKENCLEG-----VLEDITEKRKAQEFEKE 1606


>gi|83310209|ref|YP_420473.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82945050|dbj|BAE49914.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 976

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 105/652 (16%), Positives = 224/652 (34%), Gaps = 36/652 (5%)

Query: 184 VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL 243
           VH     +   A     D+    L  +     + +     +   ++   + R++  + + 
Sbjct: 52  VHFLDAYSGAEAERVLADEPQIALVLLDVVMETEDAGLRLVQYIRNMLRNKRVRIVLRTG 111

Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303
               A + DV+          +     E+     +   +      +  +           
Sbjct: 112 QPGQAPEKDVIVAYDINDYKPKTELTQERLFTTVVAALRA-----YEDIMALELNRRGLE 166

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIA 363
              +  ++       +  +   + +            L  A            V  +  +
Sbjct: 167 KILDGSAMLFQLRSLQLFSAGVLTQMS-ALVGCREDGLICAVRDDAPEMSADHVTILAGS 225

Query: 364 GGLSTL------LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
           GG                        +    S          LH+  +        T  P
Sbjct: 226 GGFEDRAGCTLRDLGEPSVITAIGTALSERHSHYGEDHLCLYLHSPHYRHLAIYLATSQP 285

Query: 418 FEKANQF------PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471
                +        +                    ++    +     +  ++ +   + +
Sbjct: 286 IPDVERQLIEVFGSKVALGYDNVHLIEALEERLLHLKRSEERYALAAKGANEALWDWSPQ 345

Query: 472 GIILSTNRAVSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
              +  +  + ++ G     +    + +   +     +++   L E        TL+   
Sbjct: 346 VQNIYFSPRMEEILGVAAGSLNGSPQTWRQHVHPEDRALLQAGLDEACE-RRSDTLDLQF 404

Query: 530 LGSTKEEKLLSLRI----IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
                  + L +R+            +    ++ DI++ K+ + +   +        +  
Sbjct: 405 RMRHVSGQTLWVRMRGAVSYGPDGAPTRLVGSLGDITDRKRYEQERLRSAAAEAASVAK- 463

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
           S+FLA +SHEIRTP+ AI+G   ++ +       +    +YA  +  SG ++L I+ND+L
Sbjct: 464 SEFLAVMSHEIRTPMNAILGMIRLLLDSPL----DETQRDYAETVLSSGEVLLSILNDIL 519

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSV 704
           D+S+IE+GK+ L      L + V   I L+   A EK + +R+  A  +P R+  D   +
Sbjct: 520 DLSRIEAGKLELERIAFDLPKVVDSIIHLMTPRAREKSLALRSWTAGGVPARLTGDPTRL 579

Query: 705 KQIALNILSNAIHFTPSGGQ-IIISTTHTSNE--EVILRVRDTGVGMTNYELEKAMKPFG 761
           +Q+ LN+LSNAI FT +G   + +S     +    + + V+DTG+G++     +    F 
Sbjct: 580 RQVLLNLLSNAIKFTEAGEVSLHLSAEIQPDGIAAIRMEVKDTGIGISPEARSRLFANFA 639

Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE--IIFPLY 811
           Q   S   R  GTGLGL + + +V    G+  + S P +G+     +  P+ 
Sbjct: 640 QADASITRRFGGTGLGLAICQNLVRLMNGEIGVDSVPGQGSTFWFVVRLPVA 691



 Score = 39.2 bits (90), Expect = 3.0,   Method: Composition-based stats.
 Identities = 38/447 (8%), Positives = 99/447 (22%), Gaps = 38/447 (8%)

Query: 96  KEISEELPKTIGNYAFKMIG--MRLCDVSDILH--IDPNNHIGDLLKRQNTWYGKTTLWP 151
              S  + + +G  A  + G               +          +R +T   +  +  
Sbjct: 349 IYFSPRMEEILGVAAGSLNGSPQTWRQHVHPEDRALLQAGLDEACERRSDTLDLQFRMRH 408

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
           + G    + + +     Y  +   +  R  G +              R     +      
Sbjct: 409 VSG--QTLWVRMRGAVSYGPDGAPT--RLVGSLGDITDRKRYEQERLRSAAAEAASVAKS 464

Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271
           +  + +  E        +    +R+            + + VL + +  L    +     
Sbjct: 465 EFLAVMSHE--IRTPMNAILGMIRLLLDSPLDETQRDYAETVLSSGEVLLSILNDILDLS 522

Query: 272 QEDFHTINLNQYTKKQ-------YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
           + +   + L +                     ++S    S       +    +   L   
Sbjct: 523 RIEAGKLELERIAFDLPKVVDSIIHLMTPRAREKSLALRSWTAGGVPARLTGDPTRLRQV 582

Query: 325 TVDKCPIPFFVYSHGNLFYANPS-------FLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
            ++           G +     +         +  + K           S L      +D
Sbjct: 583 LLNLLSNAIKFTEAGEVSLHLSAEIQPDGIAAIRMEVKDTGIGISPEARSRLFANFAQAD 642

Query: 378 NNAIKP-----VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
            +  +      + L          +  +       + S     +    A    E      
Sbjct: 643 ASITRRFGGTGLGLAICQNLVRLMNGEIGVDSVPGQGSTFWFVVRLPVAVALEEGAAAPP 702

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI-ILSTNRAVSKLFGYPVED 491
              + +         +  V Q           I I+ R G  +   N     L      D
Sbjct: 703 SPAKTLRPLKVLLAEDNPVNQ--------KVAILILERSGHKVTGVNNGAQALRAVQEGD 754

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILS 518
                  + + +         +  + +
Sbjct: 755 YDIVLMDMQMPEMDGLESTRRIRALEA 781


>gi|240141281|ref|YP_002965761.1| putative histidine kinase, putative HK, ATPase and Sensor Domain
           [Methylobacterium extorquens AM1]
 gi|254563790|ref|YP_003070885.1| histidine kinase [Methylobacterium extorquens DM4]
 gi|240011258|gb|ACS42484.1| putative histidine kinase, Putative HK, ATPase and Sensor Domain
           [Methylobacterium extorquens AM1]
 gi|254271068|emb|CAX27075.1| putative histidine kinase, Putative HK, ATPase and Sensor Domain
           [Methylobacterium extorquens DM4]
          Length = 847

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 123/724 (16%), Positives = 242/724 (33%), Gaps = 38/724 (5%)

Query: 104 KTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDL 163
              G  +  + G     ++    + P +    LL                GT   + +  
Sbjct: 135 DLRGQDSRGLQGGSRHLLAFGTWLAPQD--AQLLDSA------VATLRERGTGFRMNLRS 186

Query: 164 AALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK----RLDKKFSHLHEIKKGHSSVEK 219
            A        +  G R    +     +       +       +  S L  +         
Sbjct: 187 LAGRYIEAQGQAVGGRALLRLRETTDERRELIELRHTLEEAKRGLSALAGLLDALPQPIW 246

Query: 220 EKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP--LLTSEESSLPEQEDFHT 277
            +    +            +  S     +H  ++L        +  +    LP Q    +
Sbjct: 247 HRSPDGALAFVNAAYAAAVEAPSREAALSHGLELLDRSAREQIVRQARRPGLPAQALRLS 306

Query: 278 INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS 337
             +    +          +      +      S+ A      +    T+D+ P    ++ 
Sbjct: 307 AVVAGARRTLDVSESTLEAGRVGIAVDVSELESVRADLQRQMDANVRTLDQLPTAVAMFD 366

Query: 338 H-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA 396
               L + N ++  L        +E       +LD  + +     +            A 
Sbjct: 367 ARQRLIFHNAAYQRLWDL-DPAFLEGRPLDGEILDRLRAARKLPEQADFRSWKTDVLAAY 425

Query: 397 SARL---HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
            A                  T       N             E +        +  E  +
Sbjct: 426 RAVEPTDTPWYLPDGR----TLRVVADPNPQGGLTYLYHDVSESMKLASRYDALMKEQAE 481

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY- 512
               LEA  + +A+   +G +   NRA +  +      +  KP    +     ++     
Sbjct: 482 ---TLEALKEPVAVFGADGRLTVANRAFAATWRLDPATLAGKPHVDAVIAACRALTPDQS 538

Query: 513 ----LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568
               + + ++                +  +L        L  +    LT  D++     +
Sbjct: 539 PWAGIRQSVTGLSETRSGHGCRLDINDGTVLDCSSQPLPLGAT---LLTFIDVTASANVE 595

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
             L+      E+ S  +  F+  VS+E+R+PLT IIGF++++ ++  G L N R  EY+ 
Sbjct: 596 RALTEKNDALERASQLRDTFVHHVSYELRSPLTNIIGFTQLLGDETVGAL-NERQREYSE 654

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
           +I RS   +L I+ND+LD++ I++G + L  E + +   V  A+  ++    E  I +  
Sbjct: 655 HIMRSSAALLVIINDILDLASIDAGSLELQRETIDVRATVEAAVRGIEDRLAESDIGLDL 714

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748
                +  + AD + V+QI  N+LSNA+ F+  G Q+ +        E+ L V D G G+
Sbjct: 715 DVPEGVGSVFADGKRVRQILFNLLSNAVGFSAPGQQVRVE-ARREGRELRLTVTDRGRGI 773

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
               +++    F    N+   +  G GLGL + ++ V+ + G+  I S P  GT +  +F
Sbjct: 774 APEVIDRVFDRFE--SNTLGTKHRGVGLGLSIVRSFVELHGGRVEIHSAPGTGTRVTCLF 831

Query: 809 PLYD 812
           P+  
Sbjct: 832 PVEP 835



 Score = 40.4 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 35/388 (9%), Positives = 91/388 (23%), Gaps = 32/388 (8%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            W+    G L  ++      +   + +       ++ D    +    +    +       
Sbjct: 245 IWHRSPDGALAFVNAAYAAAVEAPSREAALSHGLELLDRSAREQ--IVRQARRPGLPAQA 302

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
                 + G    + +  + L               GI          RA  +R      
Sbjct: 303 LRLSAVVAGARRTLDVSESTL----EAGRV------GIAVDVSELESVRADLQRQMDANV 352

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
              +      ++   +  +    +     R+ +   +  E      ++L   +      E
Sbjct: 353 RTLDQLPTAVAMFDARQRLIFHNAAYQ--RLWDLDPAFLEGRPLDGEILDRLRAARKLPE 410

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS--------------L 311
           ++     +    +       +            +   ++  N                 L
Sbjct: 411 QADFRSWKT--DVLAAYRAVEPTDTPWYLPDGRTLRVVADPNPQGGLTYLYHDVSESMKL 468

Query: 312 SAYFDEGENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
           ++ +D       ET++    P  V+ + G L  AN +F    +             + + 
Sbjct: 469 ASRYDALMKEQAETLEALKEPVAVFGADGRLTVANRAFAATWRLDPATLAGKPHVDAVIA 528

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
               L+ + +    +           S     +  N    L  +  P          +  
Sbjct: 529 ACRALTPDQSPWAGIRQSVTGLSETRSGHGCRLDINDGTVLDCSSQPLPLGATLLTFIDV 588

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSIL 458
                 +         +E    QL    
Sbjct: 589 TASANVERALTEKNDALE-RASQLRDTF 615


>gi|160942539|ref|ZP_02089788.1| hypothetical protein FAEPRAM212_00016 [Faecalibacterium prausnitzii
           M21/2]
 gi|158446172|gb|EDP23174.1| hypothetical protein FAEPRAM212_00016 [Faecalibacterium prausnitzii
           M21/2]
          Length = 843

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 98/391 (25%), Positives = 182/391 (46%), Gaps = 9/391 (2%)

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVS 482
               +    ++      R   +++        ++     D   +I+ E G +   +  V 
Sbjct: 298 LAVTILLLVVQNNRQKLRKKDQQLLAREELFSNLSRNVDDVFLMIDTETGKVEYISPNVR 357

Query: 483 KLFGYPVEDILRK-PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
           ++ G   E +                     L ++     ++         T E + + +
Sbjct: 358 RILGISPEAVQEDFHVLCSAGGYNCRSRLDDLMQMEQGTQQEWNRAFIHQETGEPRYIHV 417

Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
              I  +  +    + + D ++  Q    +  A ++AEK S  K+DFL+ +SH+IRTP+ 
Sbjct: 418 TGFINAVQGAKKCIVDLSDRTDEHQTTLAVEAALEVAEKASKAKTDFLSNMSHDIRTPMN 477

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           AIIG + ++KN+   P    +  E+   ++ SG L+L I+ND+LD+S+IESGK  L+ E 
Sbjct: 478 AIIGITTLMKNELHQP---EKLAEHLAKLESSGQLLLGIINDILDMSRIESGKTTLNVEK 534

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           ++L   +S+  S+++  A ++R             +L D   +KQ+ +NILSNA+ +TP+
Sbjct: 535 INLPRQISQLESVIRQQAGQRRQTFTVETHVQHENVLGDPNRLKQVLMNILSNAVKYTPN 594

Query: 722 GGQIIIS----TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
           GG I +     T      +    V+D G+GM+    +   +PF +   S   + +GTGLG
Sbjct: 595 GGHIRLEIDELTHTEHYTKYRFVVQDNGIGMSEEFQKTLFEPFTREEKSGTNKVQGTGLG 654

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           + + K++VD   G  ++ ST  KGT  E++ 
Sbjct: 655 MAITKSIVDLMGGTIHVESTTGKGTQFEVVL 685


>gi|126659304|ref|ZP_01730440.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110]
 gi|126619386|gb|EAZ90119.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110]
          Length = 649

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 93/403 (23%), Positives = 173/403 (42%), Gaps = 23/403 (5%)

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
             +               ++ ++          +    G+  +NR G IL  N  + K+F
Sbjct: 110 HYIRLAAAIRSAWQRWQQRQALDQIQQTYDRFFKRIPLGLYRLNRAGEILEANPTLMKMF 169

Query: 486 GYP-VEDILRKPFT-VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           GY   E++  +      LE +        L ++ + +     +        +++++ +  
Sbjct: 170 GYEKREELFNQNLANYHLEPDVYRQWQQQLGQVEAKE-----DFEGRIRNHQQEIIWVSH 224

Query: 544 IIKKLPFSSC----YSLTMHDISEWKQEK-------NKLSHAKKIAEKESSHKSDFLARV 592
               +         Y   + DI+  KQ +       ++   A++ AE+ +  K +FLA +
Sbjct: 225 KAIAVKDKKGEIIGYEGAIADITASKQAELERIQLLHEARQAQEEAERLNHVKDEFLATL 284

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHE+RTPL AIIG+ +++   R G L   ++      I+R+ N+   ++ DLLD+S+I  
Sbjct: 285 SHELRTPLNAIIGWMQLL---RSGTLNEDQFNTGLEVIERNANVQTQLIEDLLDVSRIIC 341

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712
           G + L  +P+++   +  +I  V   A  K I I    ++    I  D   ++Q+  N+L
Sbjct: 342 GTLKLEAQPINVISVILSSIDTVSPTAKAKNININLQLSSQTIEINGDKERLQQVFWNLL 401

Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI-PNSQQIRG 771
            NA+ FTP  G I I     +N+   +R+ DTG G++   L      F Q    S     
Sbjct: 402 INAVKFTPIDGSITIEGGEENNQMAFIRITDTGKGISGDVLPHIFDRFRQAEHKSSTRTQ 461

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFPLYDT 813
            G GLGL + + +V+ + G     S    KG+   +  P+  +
Sbjct: 462 GGLGLGLAIVRHIVEMHGGSVMAESEGIDKGSTFTVELPVIQS 504



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/155 (10%), Positives = 47/155 (30%), Gaps = 19/155 (12%)

Query: 311 LSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
                D+ +        + P+  + +   G +  ANP+ + +  Y+  +++     L+  
Sbjct: 127 QRQALDQIQQTYDRFFKRIPLGLYRLNRAGEILEANPTLMKMFGYEKREELFNQN-LANY 185

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
              P +      +   +   +            I W       ++       ++  E + 
Sbjct: 186 HLEPDVYRQWQQQLGQVEAKEDFEGRIRNHQQEIIW-------VSHKAIAVKDKKGEIIG 238

Query: 430 QNGIEPEDVDTRINK----------RKMEIEVMQL 454
             G   +   ++  +          R+ + E  +L
Sbjct: 239 YEGAIADITASKQAELERIQLLHEARQAQEEAERL 273



 Score = 47.7 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/152 (11%), Positives = 44/152 (28%), Gaps = 6/152 (3%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + ++  G + E +  L K  G    +             H++P+ +     +       
Sbjct: 149 LYRLNRAGEILEANPTLMKMFGYEKRE---ELFNQNLANYHLEPDVYRQWQQQLGQVEAK 205

Query: 146 KTTLWPIEGTNLY-VPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
           +     I       + +   A+ +  +  E  G+ G   +              +L  + 
Sbjct: 206 EDFEGRIRNHQQEIIWVSHKAIAVKDKKGEIIGYEG--AIADITASKQAELERIQLLHEA 263

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM 236
               E  +  + V+ E     S +   P   +
Sbjct: 264 RQAQEEAERLNHVKDEFLATLSHELRTPLNAI 295


>gi|295084122|emb|CBK65645.1| PAS domain S-box [Bacteroides xylanisolvens XB1A]
          Length = 810

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 104/513 (20%), Positives = 189/513 (36%), Gaps = 36/513 (7%)

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
               D  E +        P    +Y   G L   N   L +      ++         L 
Sbjct: 314 RLALDNSEKILRNIYKNLPAGVELYDKDGYLVDINDKELEIFGLSDKNEALGVN----LF 369

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARL----HTIQWNRENSLAMTFIPFEKANQFPE 426
           D P +      +   L   +    + +         +   R   + +        +    
Sbjct: 370 DNPNIPSEVKER---LRAKEDVNFSINYDFSKINQYVDSRRNGIINLNTKVTALYDSQNR 426

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA---IINREGIILSTNRAVSK 483
            +    I  +  +T     K++        I +    G A   ++ R+G          +
Sbjct: 427 FINYLFINIDTTETTNAYTKIQEFENLFLLIGDYAKVGFAHFNVLTRDG---YAQDTWYR 483

Query: 484 LFGYPVEDILRKPFTVFLE--QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
             G      + +   V+        +V+ +++ E+       +L K      +  K    
Sbjct: 484 NLGEKEGIPMPQVIGVYAHVVPEDQAVLKNFVGEV-KTGKATSLRKEVRVCRENGKYTWT 542

Query: 542 RIIIK--KLPFSSCYS---LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
            I +                  +DI+  K+ + KL  A+  AE+    KS FLA +SHEI
Sbjct: 543 SINVVVRDYRPQDGIIEMLCINYDITPLKETEQKLIIARDKAEELDRLKSAFLANMSHEI 602

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTPL AI+GFS ++              EY   +  +  L+L +++D+LD+SKIE+G  N
Sbjct: 603 RTPLNAIVGFSSLLAETD----SRSERQEYIKIVQENNELLLQLISDILDLSKIEAGTFN 658

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716
             +  V ++E  SE I  + +    K + +          I  D     Q+  N ++NA+
Sbjct: 659 FVYTNVDVNETCSEIIKSMGMKV-GKGVELILEEPFPECYIYTDKNRFTQVISNFINNAL 717

Query: 717 HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
            FT  G  I +      ++++   VRDTG+G+   + +   + F ++        +GTGL
Sbjct: 718 KFTQQGS-ITLGYEQVPHQKIKFYVRDTGMGIPEEKQKSVFERFVKLNTF----VQGTGL 772

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GL + K++V    G+  + ST   G+      P
Sbjct: 773 GLSICKSIVSQMGGEIGVDSTEGVGSCFWFTHP 805


>gi|309778817|ref|ZP_07673590.1| sensory box histidine kinase/response regulator [Ralstonia sp.
           5_7_47FAA]
 gi|308922525|gb|EFP68149.1| sensory box histidine kinase/response regulator [Ralstonia sp.
           5_7_47FAA]
          Length = 683

 Score =  319 bits (817), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 100/382 (26%), Positives = 173/382 (45%), Gaps = 21/382 (5%)

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILST-NRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
            +   +L + L+A+   +  ++         N     +FG   E +L +       +   
Sbjct: 161 RLSQQRLLAALQASPISLYDVDNTMHFTWVHNP----VFGLQPEQLLGRTVREVFGRRAA 216

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEW 564
           S +      +++      +E        +  +  + ++  +         +  + DISE 
Sbjct: 217 SRLTEAGQRVIATGTPTRVEFAFRRRHTQRVVYDVVVMPLRDDTGEIIGLTNAVIDISER 276

Query: 565 KQEK-------NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
           +Q +          S A++ AE+ S  K DFLA VSHE+RTPL A++G+++++       
Sbjct: 277 RQAEARRTQLLEAESRAREEAERASRLKDDFLATVSHELRTPLNAVLGWAQLL---NMRA 333

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
                +      I+RS    + +++DLLD+S I SGK+ L   PV L + +  A   ++ 
Sbjct: 334 YDEAMFKRGIEAIERSARTQVHLIDDLLDMSAILSGKVPLEVGPVDLADVLERARETIEP 393

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737
            A +K I I T F   +P +  D   +KQ+  N+L+NA+ FTP GG I +S   +    V
Sbjct: 394 MARQKNITIDTEFLP-VPMLQGDAGRLKQVFWNLLANAVKFTPEGGHIRLSVHPSPEGVV 452

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY-IFS 796
              VRDTG+G+    L      F Q   S   R  G GLGL +AK +V+ + G+     S
Sbjct: 453 A-TVRDTGIGIEPAFLPHIFDRFQQADLSNTRRHGGLGLGLAIAKQLVELHHGRITAASS 511

Query: 797 TPAKGTLIEIIFPLYDTSHPHD 818
              +GT + +  PL+  + P +
Sbjct: 512 GADRGTTMAVSLPLH-AAQPGE 532



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 37/342 (10%), Positives = 78/342 (22%), Gaps = 26/342 (7%)

Query: 105 TIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLA 164
             G    +++G  + +V            G  +    T       +        V  D+ 
Sbjct: 194 VFGLQPEQLLGRTVREVFGRRAASRLTEAGQRVIATGTPTRVEFAFRRR-HTQRVVYDVV 252

Query: 165 ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDI 224
            +P+     E  G     I           A   +L +  S   E  +  S ++ +    
Sbjct: 253 VMPLRDDTGEIIGLTNAVI--DISERRQAEARRTQLLEAESRAREEAERASRLKDDFLAT 310

Query: 225 FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYT 284
            S +   P        + L    A+ + + K     +  S  + +   +D   ++     
Sbjct: 311 VSHELRTPLN-AVLGWAQLLNMRAYDEAMFKRGIEAIERSARTQVHLIDDLLDMSAILSG 369

Query: 285 KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNL--F 342
           K        + +               +      +       +  P+P      G L   
Sbjct: 370 KVPLEVGPVDLADVL-------ERARETIEPMARQKNITIDTEFLPVPMLQGDAGRLKQV 422

Query: 343 YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIA------A 396
           + N          +       GG   L   P      A         +   +        
Sbjct: 423 FWN-------LLANAVKFTPEGGHIRLSVHPSPEGVVATVRDTGIGIEPAFLPHIFDRFQ 475

Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
            A L   + +    L +                 +       
Sbjct: 476 QADLSNTRRHGGLGLGLAIAKQLVELHHGRITAASSGADRGT 517


>gi|33601971|ref|NP_889531.1| virulence sensor protein [Bordetella bronchiseptica RB50]
 gi|34978360|sp|P26762|BVGS_BORBR RecName: Full=Virulence sensor protein BvgS; Flags: Precursor
 gi|33576409|emb|CAE33487.1| virulence sensor protein [Bordetella bronchiseptica RB50]
          Length = 1238

 Score =  319 bits (817), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 107/556 (19%), Positives = 200/556 (35%), Gaps = 31/556 (5%)

Query: 274 DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV-DKCPIP 332
                            T+      +   L  + +P       +        V D     
Sbjct: 399 TRQDPAAPADADHLDGRTIAMVRNSAAIPLLQQRYPQAKVVTADNPTEAMLLVADGQADA 458

Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
                    +Y N  F    +  S  D+  A            +        +L ++  +
Sbjct: 459 VVQTQISASYYVNRYFAGKLRIASALDLPPAEIALA------TARGQTELISILNKALYS 512

Query: 393 CIAASARLHTIQW---NRENSLAMTFIPFEKANQFPENMPQNG-------IEPEDVDTRI 442
                      +W   + +      +            +           +  +    + 
Sbjct: 513 ISNDELASIVSRWRGSDGDPRTWYAYRNEIYLLIGLGLLSALLFLSWIVYLRRQIRQRKR 572

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            +R +  ++  +  +++ T + I + ++EG +L  N A    FG   + +L K       
Sbjct: 573 AERALNDQLEFMRVLIDGTPNPIYVRDKEGRMLLCNDAYLDTFGVTADAVLGKTIPEANV 632

Query: 503 QNTPSVMNH----YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLT 557
              P++        LT + +    +  ++      +   +    +               
Sbjct: 633 VGDPALAREMHEFLLTRMSAEREPRFEDRDVTLHGRTRHVYQWTVPYGDSLGELKGIIGG 692

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
             DI+E  +   +L  AK+ A+  +  K+ FLA +SHEIRTP+ AIIG  E+       P
Sbjct: 693 WIDITERAELLRELHDAKESADAANRAKTTFLATMSHEIRTPMNAIIGMLELAL---LRP 749

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
                  +       S   +L+++ D+LDI+KIE+GK +L     +L      AI +   
Sbjct: 750 ADQEPDRQSIQVAYDSARSLLELIGDILDIAKIEAGKFDLAPVRTALRALPEGAIRVFDG 809

Query: 678 YANEKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
            A +K I +        +  +L D   +KQ+  N++ NAI FT  G Q++++ T   + E
Sbjct: 810 LARQKGIELVLKTDIVGVDDVLIDPLRMKQVLSNLVGNAIKFTTEG-QVVLTVTARPDGE 868

Query: 737 ---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQ-QIRGEGTGLGLPLAKAMVDANMGKF 792
              V   V DTG G++  +  +  KPF Q+  S       GTGLGL +++ +V+   G  
Sbjct: 869 AAHVQFSVSDTGCGISEADQRQLFKPFSQVGGSAEAGPAPGTGLGLSISRRLVELMGGTL 928

Query: 793 YIFSTPAKGTLIEIIF 808
            + S P  GT + +  
Sbjct: 929 VMRSAPGVGTTVSVDL 944



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/232 (10%), Positives = 57/232 (24%), Gaps = 12/232 (5%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D  G +   ++    T G  A  ++G  + + + +        + + L  + +   +   
Sbjct: 599 DKEGRMLLCNDAYLDTFGVTADAVLGKTIPEANVVGDPALAREMHEFLLTRMSAEREPRF 658

Query: 150 WPIEGTNLYVP--IDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
              + T       +    +P      E  G  G  I        +         +     
Sbjct: 659 EDRDVTLHGRTRHVYQWTVPYGDSLGELKGIIGGWI--DITERAELLRELHDAKESADAA 716

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
           +  K    +    +                 +++ L       D       Y    S   
Sbjct: 717 NRAKTTFLATMSHEIRTPMNAIIGML-----ELALLRPADQEPDRQSIQVAYDSARSLLE 771

Query: 268 SLPEQEDFHTINLN---QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
            + +  D   I          +     L   +   F+ L+ +    L    D
Sbjct: 772 LIGDILDIAKIEAGKFDLAPVRTALRALPEGAIRVFDGLARQKGIELVLKTD 823


>gi|229096886|ref|ZP_04227855.1| hypothetical protein bcere0020_21330 [Bacillus cereus Rock3-29]
 gi|228686496|gb|EEL40405.1| hypothetical protein bcere0020_21330 [Bacillus cereus Rock3-29]
          Length = 801

 Score =  319 bits (817), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 101/532 (18%), Positives = 211/532 (39%), Gaps = 47/532 (8%)

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVD----KCPIPFFV-YSHGNLFYANPSFLLL 351
            +  E +      +     +     T E ++           +    G++  +N ++  +
Sbjct: 294 GQVIEVVGSTVDITERKKVESELRATKELLESFIKHNVDAITISDREGHILQSNKAYEKI 353

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN-RENS 410
             +   + I            P + D    + +   +   T  +   RL T++     + 
Sbjct: 354 FGWSLEEIIGKRL--------PCVPDFLMEESLENIQKILTGESVVTRLETVRRRNDGSL 405

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK-------MEIEVMQLCSILEATSD 463
           L ++       +     +  + I  +  + +  +R+       ++   M+  +++E  +D
Sbjct: 406 LDVSLTVSPILDVRGNVIALSAICRDISERKQAERERHQLHQQLKDSEMKYRALIEQATD 465

Query: 464 GIAIINREG-----IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
            + ++           +  N    K FGY  E++L  PF   + Q++  ++   L +I  
Sbjct: 466 AVYVVELNENYVPSRFIEVNPVGCKRFGYSREELLSLPFPNVVPQDSKMIVR-LLEKIRE 524

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578
            +   TL+      T +       + +  L     +     DI+E  + +  L  ++K+A
Sbjct: 525 GETSFTLQDEYAFPTGKIITTEFSVRVFNLNGKKVFLSISRDITERLKTEELLRKSEKLA 584

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
                        ++HEI  PLTA+ GF +++K+             Y N +      + 
Sbjct: 585 VV-----GQLATAMAHEINNPLTAMKGFMQLLKSTE-----TENNQGYINIVSSEIERIE 634

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
            I N+ + ++K +  K+  +     +   + + + L+Q  A    I IR  F   IP I 
Sbjct: 635 SITNEFMAVAKPQVVKIQPN----DISVLMDQVLMLLQPQAMMNNIKIRIDFTPGIPLIP 690

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
            +   +KQ+ +NI+ NAI   P+GG+I+I      N ++ +R  D G G+    +    +
Sbjct: 691 CEGNQLKQVFVNIIKNAIESMPTGGEILIQFDKLDNNQIRIRFIDQGCGIPKERIPYLGE 750

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           PF        I+ EG GLGL +   +++ + GK +I S   KGT++E+  P+
Sbjct: 751 PFY------SIKEEGIGLGLMVCYKIIETHQGKVFIESEVNKGTIVEVTLPI 796



 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 42/280 (15%), Positives = 89/280 (31%), Gaps = 20/280 (7%)

Query: 313 AYFDEGENLTPETVDKCPIPFF----VYSHGNLFYANPSFLLLTKYKSVDDIEI-AGGLS 367
               + +    +TV +     F    V  H      +  F     + S   +      + 
Sbjct: 186 RELKKSKQELTDTVHELQGGIFKFKKVGKHFIHTLCDGQFYYQKGFYSEQVVGKSLRTID 245

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
             +  P L          L   +   I        + W  + ++ +         +  + 
Sbjct: 246 ASIVPPHLVSQLMKY--YLQAWEGKEIIFE-----LPWPDDKTIILI--ALRPIKRNGQV 296

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
           +   G   +  + +  + ++      L S ++   D I I +REG IL +N+A  K+FG+
Sbjct: 297 IEVVGSTVDITERKKVESELRATKELLESFIKHNVDAITISDREGHILQSNKAYEKIFGW 356

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
            +E+I+ K     +           + +IL           T+    +  LL + + +  
Sbjct: 357 SLEEIIGKRL-PCVPDFLMEESLENIQKIL-TGESVVTRLETVRRRNDGSLLDVSLTVSP 414

Query: 548 LPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESS 583
           +               DISE KQ + +     +  +    
Sbjct: 415 ILDVRGNVIALSAICRDISERKQAERERHQLHQQLKDSEM 454



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 38/287 (13%), Positives = 81/287 (28%), Gaps = 25/287 (8%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG-KTT 148
           D  G++ + ++   K  G    ++IG RL  V D L  +   +I  +L  ++     +T 
Sbjct: 338 DREGHILQSNKAYEKIFGWSLEEIIGKRLPCVPDFLMEESLENIQKILTGESVVTRLETV 397

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +G+ L V + ++  PI              I               +L ++     
Sbjct: 398 RRRNDGSLLDVSLTVS--PILDVRGNVIALS--AICRDISERKQAERERHQLHQQLKDSE 453

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLR--------------MKNKVSSLT-EYYAHKDDV 253
              +       +   +          R               + ++ SL       +D  
Sbjct: 454 MKYRALIEQATDAVYVVELNENYVPSRFIEVNPVGCKRFGYSREELLSLPFPNVVPQDSK 513

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
           +       +   E+S   Q+++        T +               +LS     +   
Sbjct: 514 MIVRLLEKIREGETSFTLQDEYAFPTGKIITTEFSVRVFN--LNGKKVFLSISRDITERL 571

Query: 314 YFDEGENLTP--ETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVD 358
             +E    +     V +       +   N   A   F+ L K    +
Sbjct: 572 KTEELLRKSEKLAVVGQLATA-MAHEINNPLTAMKGFMQLLKSTETE 617


>gi|224537735|ref|ZP_03678274.1| hypothetical protein BACCELL_02618 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520658|gb|EEF89763.1| hypothetical protein BACCELL_02618 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 775

 Score =  319 bits (817), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 88/372 (23%), Positives = 171/372 (45%), Gaps = 13/372 (3%)

Query: 441 RINKRKMEIEVMQLCSILEATSDG--IAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
           ++   + +  +  L +IL+       +  ++ +      N+   +LF YP ++ + +   
Sbjct: 402 KVRATEWQEHLHLLENILDNLPIAAKVKDVDNDMRYTFINKKAEELFEYPAKEAIGRT-D 460

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL-T 557
             +     +++     E++   + Q   +    +  EE+       I        + L T
Sbjct: 461 FDIMPEAATMIRKEDEELVRTGIAQFGTRRFFTNKNEERFTFQNNNIVSFSDGRKWILYT 520

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
             DI++ K  + KL  AK+ AE+ +  KS FLA +SHEIRTPL AI+GFS ++       
Sbjct: 521 AWDITDQKILERKLRLAKEEAEESNRIKSAFLANMSHEIRTPLNAIVGFSSILAED---- 576

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
           +     IEY + I ++ +++L ++ND+LD+SKIE+G +   +  + +++ +SE     ++
Sbjct: 577 VSEEERIEYLSIISKNNDILLQLINDILDLSKIEAGTLEYVYANIDVNKMLSEIEQAARM 636

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737
                 + I          +  D R + Q+  N +SNA+ FT +G  I        +  +
Sbjct: 637 RQPNANVAICAVMPMPDLLLYTDQRRITQVLNNFISNAMKFTNTGS-ITFGYEEPKDGYI 695

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
              V DTG G+   ++      F ++ + +    +GTGLGL +++ +V    G+  + S 
Sbjct: 696 RFFVTDTGTGIPPEKVADIFNRFVKLDSFK----QGTGLGLAISQNIVKELKGEIGVLSE 751

Query: 798 PAKGTLIEIIFP 809
             KG+      P
Sbjct: 752 LGKGSTFWFTLP 763


>gi|327482684|gb|AEA85994.1| conserved hypothetical protein [Pseudomonas stutzeri DSM 4166]
          Length = 854

 Score =  319 bits (817), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 119/722 (16%), Positives = 239/722 (33%), Gaps = 59/722 (8%)

Query: 104 KTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDL 163
           + +G    + I  RL D      +     + D +++            +      + ++ 
Sbjct: 57  QMLGEKVTEAIRKRLRD--HEQILLGGAGLFDAVEQ------------VSREQWRLYVER 102

Query: 164 AALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYD 223
            AL        + G +G G     R       + +   + F+        H + E+E Y 
Sbjct: 103 LALAER-----YPGIQGVGFTQAIRPAERAAHVARIRSQGFADY----DIHPAGERELYT 153

Query: 224 IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY 283
                 P     +      +      +  + +  +    +        QE   T+     
Sbjct: 154 SIIFLEPFSGRNLAAFGYDMYAEPIRQQAMQRAAQLGETSITGKVTLVQETHGTVQAGVL 213

Query: 284 TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY 343
                +      S       +           D+         D  P+   +Y+      
Sbjct: 214 LYVPVYRPHLPTSTPDERMQALLGFVYSPYRVDDLMRGILRAAD-LPLALHIYAS----- 267

Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403
           A+ +   L           +   S L            +   L    R         +  
Sbjct: 268 ADEAPEHLLHASREAPAPGSARYSAL-----QRLELYGQTWTLRMDSRPEFEDRFHANEA 322

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT-RINKRKMEIEVMQLCSILEATS 462
                       + F  ++    +     +  E     R ++  + +   +L   L+ ++
Sbjct: 323 LVFGLGLGLSLLVFFLTSSLALRHGRAQALAEEMTRHIRQSRHDLRLSEERLSLALKGSN 382

Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEILSLD 520
           DG+  ++ E   +  +    ++ GY   ++    K +   +     +     L + +  +
Sbjct: 383 DGLWDLDLEAGSMYASPRAWEMLGYRPNELPCDLKLWERVIVAEDLAQQKARLAQTMLAN 442

Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKK 576
           +            K   ++ + +               S T+ D++E K+ +        
Sbjct: 443 VDH-FTTELRLQHKHGHVVPVLLRGYIQRDPQGMAQRISGTLMDLTERKRIE-------- 493

Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
                   K+DF++ VSHE+RTPLT+I G   +I     G    P   +       +   
Sbjct: 494 ------QMKNDFVSTVSHELRTPLTSISGALGLIVGGALGKAP-PSMQQMLEIAYSNSLR 546

Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696
           +  ++NDLLD+ KI +GKM+      SL E + E+++  Q   ++  +      A ++ R
Sbjct: 547 LGHLINDLLDMEKIAAGKMSFELREHSLGELLKESLASNQALCDQHGVRCSLEHATDV-R 605

Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKA 756
           +  D   ++Q+  N LSNA  FTP+GG I + ++    + V + V D G G+      + 
Sbjct: 606 VWVDGMRLQQVLGNFLSNAFKFTPAGGHIRVHSSLR-GQRVRISVTDQGPGIPEAFRSRV 664

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
            + F Q   S   +  GTGLGL + K +++   G       P +GT      P+   S  
Sbjct: 665 FEKFAQADASDSRQKSGTGLGLAITKELIERMGGTVGFDCEPGQGTTFWCELPIQLPSTE 724

Query: 817 HD 818
            D
Sbjct: 725 TD 726


>gi|332142546|ref|YP_004428284.1| aerobic respiration control sensor protein ArcB [Alteromonas
           macleodii str. 'Deep ecotype']
 gi|327552568|gb|AEA99286.1| aerobic respiration control sensor protein ArcB [Alteromonas
           macleodii str. 'Deep ecotype']
          Length = 784

 Score =  319 bits (817), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 104/406 (25%), Positives = 183/406 (45%), Gaps = 19/406 (4%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
             K  Q         +E E  D    + +       L SI++A+ D I   N EG     
Sbjct: 124 QRKQAQEEREALFKDLEREIQDKSEQEAQARRLSTLLRSIIDASPDLIYYRNEEGRFAGC 183

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
           NR    + G   +++L        E+     +     E+L  +   T E     +    +
Sbjct: 184 NRIAELMTGKTEQELLGLTPKDVYEEELARQIVASDHEVLETNASITEELWLRFADGRRR 243

Query: 538 LLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
              ++ +       +         D++E KQ +N        A K S+ K+ F+A +SHE
Sbjct: 244 YFEMKRVPFFDKEGNRLGLLSFGRDMTERKQAEN-------AAAKASTDKTRFIATISHE 296

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           +RTPL  I+G S ++++       +     + + I  S   + +I ND++D+ K++  K+
Sbjct: 297 LRTPLNGIVGLSRMLRDTEL----SDEQFSWVSTIYASAITLGNIFNDIIDLDKLDRDKL 352

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSN 714
            L  + +SL +   E  S+++L A +K++ ++TS    +PR +  D   ++QI  NIL N
Sbjct: 353 ELSLKTISLKDFTEELSSIIRLLAADKQLELKTSINEPLPRLVEIDGTRLRQILWNILFN 412

Query: 715 AIHFTPSGGQIIISTTHT----SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           A+ FT  G  + +S + T        V   + DTGVG+   E++K    + Q+ +     
Sbjct: 413 AVKFTQKG-HVSLSVSSTKPDGDKAYVTFVIEDTGVGIPESEIDKIFAMYYQVDHPDHQS 471

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
             GTG+GL + K MVD   G+ ++ S   KGT  EI+ P+  ++ P
Sbjct: 472 ATGTGIGLAICKQMVDLMNGEIHVSSKEGKGTRFEIVLPVQISNSP 517



 Score = 45.8 bits (107), Expect = 0.028,   Method: Composition-based stats.
 Identities = 12/104 (11%), Positives = 28/104 (26%), Gaps = 5/104 (4%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLW 150
            G     +       G    +++G+   DV +            ++L+   +   +  LW
Sbjct: 177 EGRFAGCNRIAELMTGKTEQELLGLTPKDVYEEELARQIVASDHEVLETNASITEE--LW 234

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR 194
                      ++  +P + +     G   FG            
Sbjct: 235 LRFADGRRRYFEMKRVPFFDKEGNRLGLLSFG--RDMTERKQAE 276



 Score = 41.6 bits (96), Expect = 0.65,   Method: Composition-based stats.
 Identities = 16/184 (8%), Positives = 45/184 (24%), Gaps = 15/184 (8%)

Query: 276 HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF- 334
           H I   +  +++     ++  +E       ++     A       L    +D  P   + 
Sbjct: 120 HEIEQRKQAQEEREALFKDLERE------IQDKSEQEAQARRLSTLLRSIIDASPDLIYY 173

Query: 335 VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394
               G     N    L+T     + +        L       +  A + V          
Sbjct: 174 RNEEGRFAGCNRIAELMTGKTEQELLG-------LTPKDVYEEELARQIVASDHEVLETN 226

Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK-RKMEIEVMQ 453
           A+      +++                ++    +       +  + +  +    +    +
Sbjct: 227 ASITEELWLRFADGRRRYFEMKRVPFFDKEGNRLGLLSFGRDMTERKQAENAAAKASTDK 286

Query: 454 LCSI 457
              I
Sbjct: 287 TRFI 290


>gi|190568905|ref|ZP_03021807.1| sensory box histidine kinase YycG [Bacillus anthracis
           Tsiankovskii-I]
 gi|190559972|gb|EDV13955.1| sensory box histidine kinase YycG [Bacillus anthracis
           Tsiankovskii-I]
          Length = 613

 Score =  319 bits (817), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 85/372 (22%), Positives = 159/372 (42%), Gaps = 25/372 (6%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +  +   E E  +L S+L   +DG+   +R+G I+  N    K+     E  L +     
Sbjct: 258 QQARSSTESERRKLSSVLSHMTDGVIATDRKGDIILLNDPAEKMLNVSRETALDQSVLEV 317

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
           L       ++H   E  S+ L  +                  +I K+   ++     ++D
Sbjct: 318 LGIQEEFTLDHLYEEPDSVLLDFSTRNEPYILRAS-----FSVIQKETGKANGLIAVLYD 372

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           ++                E+    + +F+A VSHE+RTPLT +  + E + +  +     
Sbjct: 373 VT--------------EQERIERERREFVANVSHELRTPLTTMRSYLEALTDGAWQDPNI 418

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
                +   I      ++ +VN LL +SK++S +  L  E V   +  +  I   +  + 
Sbjct: 419 APQ--FLTVIQEETERMIRLVNALLQLSKLDSTEHRLMKEWVDFTDFFNNIIDRFE-MSK 475

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV-IL 739
           E+ +  + SF+     I  D   + Q+  NI+SNA+ ++P GG +          E+  +
Sbjct: 476 EQNVSFKRSFSKKSRFIDMDTDKITQVLYNIISNALKYSPEGGTVT--YRLRDRGELLEI 533

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V D G+G+    ++K  + F ++  ++  +  GTGLGL +AK M++A+ G  +  S   
Sbjct: 534 SVSDQGMGIPKENVDKIFERFYRVDKARSRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEG 593

Query: 800 KGTLIEIIFPLY 811
           KGT I    P+ 
Sbjct: 594 KGTTIYFTLPMA 605


>gi|167552022|ref|ZP_02345775.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|194442848|ref|YP_002042586.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|197250849|ref|YP_002148253.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|194401511|gb|ACF61733.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|197214552|gb|ACH51949.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|205323203|gb|EDZ11042.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
          Length = 778

 Score =  319 bits (817), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 85/435 (19%), Positives = 177/435 (40%), Gaps = 17/435 (3%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L +          +L  +Q     +     I   +  +         ++ E
Sbjct: 81  EESRQRLSRLVQKLEEMRERDLKL-NVQLKDNIAQLNQEIADREKAEAELQETFEQLKVE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             +    + ++E +   L S L+A+ D +   N +      NRA+  L G   + ++   
Sbjct: 140 IKEREEAQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCY 554
                       +     ++   ++  T E+        +    +R +    ++      
Sbjct: 200 PEDVYSPEAAEKVIETDEKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGL 259

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+        +   E+ S  K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 260 MGFGRDITERKR-------YQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTD 312

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     +Y   I  S   + +I ND++D+ K+E  K+ L  +PV     +++  +L
Sbjct: 313 LTA----EQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFMADLENL 368

Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
             L A +K +         +P  ++ D   ++QI  N++SNA+ FT  G Q+ +   +  
Sbjct: 369 SGLQAQQKGLRFVLEPTLPLPHKVITDGTRLRQILWNLISNAVKFTQQG-QVTVRARYDE 427

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMGKF 792
            + +   V D+G+G+   E +K    + Q+ +S   +   GTG+GL +++ +     G  
Sbjct: 428 GDMLHFEVEDSGIGIPQDEQDKIFAMYYQVKDSNGGKPATGTGIGLAVSRRLAKNMGGDI 487

Query: 793 YIFSTPAKGTLIEII 807
            + S P KG+   + 
Sbjct: 488 TVSSLPGKGSTFTLT 502


>gi|299133352|ref|ZP_07026547.1| PAS/PAC sensor signal transduction histidine kinase [Afipia sp.
           1NLS2]
 gi|298593489|gb|EFI53689.1| PAS/PAC sensor signal transduction histidine kinase [Afipia sp.
           1NLS2]
          Length = 834

 Score =  319 bits (817), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 136/685 (19%), Positives = 239/685 (34%), Gaps = 43/685 (6%)

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
           +        + ++A    +         G  IV   R  +  R     + ++  HL E  
Sbjct: 167 LRERGESFLLTMSASNGRAIEAIGRAVGGQAIVR-IRELSGVRLELAEMTQRHLHLIEET 225

Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271
               +   E       +     LR  N   +     A+  D ++     LL SE+ +   
Sbjct: 226 DALRAFAAEIPQPLWARRANGTLRYANAAYARAAEAANPSDAIERG-VELLDSEDRAAMR 284

Query: 272 QEDFHTINLNQYTKKQYFGTLQN--------NSKESFEYLSHRNHPSLSAYFDEGENLTP 323
                             G  +                 +      +         +   
Sbjct: 285 HALAEGKPYRARLPVAIGGERRIFDVFAYNVTDGSVGVAIDCSETVAFKDALMRMADAHR 344

Query: 324 ETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
             +D+      V+     L + N S+  L              L         SD++ ++
Sbjct: 345 RMLDQLSSGVAVFDADKRLAFYNDSYRRLWD------------LDRAFLDSNPSDSSVLE 392

Query: 383 PVMLYRSDRTCIAASA---RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
            +   R         A   RLH      E +    ++P  +A          G      D
Sbjct: 393 KLRAERKIPEQPDFRAWKARLHEAYRAIEPAKETWYLPDGRAVSIVTTPNPEGGVTYLFD 452

Query: 440 TRINKRKMEIEVMQL----CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
                 K++ +   L       L+  S+ +A+    G     N   ++L+    E + ++
Sbjct: 453 DVTESLKLQRQHDGLLRVQRETLDNLSEAVAVFGGNGRAQLFNPPFAQLWKLSTEALQQQ 512

Query: 496 PFTVFLEQNTPSVMNHYLT----EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
           P    +EQ    +     T          +       T    K+  +  L      LP  
Sbjct: 513 PHIETIEQWCRPLFEDAATWQAIRAAITGIDSRTALQTRIERKDGSV--LDCTTIPLPDG 570

Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
           +       D+++    +  L       E     K DF+  VS+E+R+PLT IIGF+  + 
Sbjct: 571 ATMLA-FQDVTDSVNVERALRERNDALEAADQMKVDFVHHVSYELRSPLTTIIGFAHFLS 629

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
           +   GP+   +  EY NYI  S N +L I+N++LD++ I +G M L   PV L + V EA
Sbjct: 630 DPATGPMTV-KQSEYLNYITTSTNALLAIINNILDLATINAGAMTLDLGPVDLRKTVEEA 688

Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
            + +Q       I +      +    +AD R + QI  N+L+NAI F+P+ G + ++   
Sbjct: 689 TAGLQDRLVHDNIRLVIDIDPSAAGFIADERRIVQIFYNLLANAIGFSPTNGTVRLN-AW 747

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFG-QIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
             N  +   V D G G+ +   +K    F  +   S+     G GLGL L ++ V+ + G
Sbjct: 748 RENGLICCAVADAGPGIPDDVRDKVFDWFESRANGSRHR---GAGLGLSLVRSFVELHGG 804

Query: 791 KFYIFSTPAKGTLIEIIFPLYDTSH 815
           +  + S   +GT +   FP   T+H
Sbjct: 805 RVRVDSVVGEGTTVTCEFPADQTAH 829



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 43/384 (11%), Positives = 96/384 (25%), Gaps = 37/384 (9%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            W   A+G L+  +    +            R  ++ D         +   L     +  
Sbjct: 239 LWARRANGTLRYANAAYARAAEAANPSDAIERGVELLDSED---RAAMRHALAEGKPYR- 294

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
                P+         D+ A  +   +         G+          +    R+     
Sbjct: 295 --ARLPVAIGGERRIFDVFAYNVTDGS--------VGVAIDCSETVAFKDALMRMADAHR 344

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
            + +      +V      +          R+ +   +  +       VL+  +      E
Sbjct: 345 RMLDQLSSGVAVFDADKRLAFYNDSY--RRLWDLDRAFLDSNPSDSSVLEKLRAERKIPE 402

Query: 266 ESSL-PEQEDFHTINLNQYTKKQY-----------FGTLQNNSKESFEYLSHRNHPSLSA 313
           +      +   H         K+              T       ++ +        L  
Sbjct: 403 QPDFRAWKARLHEAYRAIEPAKETWYLPDGRAVSIVTTPNPEGGVTYLFDDVTESLKLQR 462

Query: 314 YFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
             D    +  ET+D       V+   G     NP F  L K  + + ++    + T+   
Sbjct: 463 QHDGLLRVQRETLDNLSEAVAVFGGNGRAQLFNPPFAQLWKLST-EALQQQPHIETIEQW 521

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
            +    +A     +  +     + +A    I+    + L  T IP               
Sbjct: 522 CRPLFEDAATWQAIRAAITGIDSRTALQTRIERKDGSVLDCTTIPLPDGA-------TML 574

Query: 433 IEPEDVDTRINKRKMEIEVMQLCS 456
              +  D+   +R +      L +
Sbjct: 575 AFQDVTDSVNVERALRERNDALEA 598


>gi|218708960|ref|YP_002416581.1| sensory box histidine kinase/response regulator [Vibrio splendidus
           LGP32]
 gi|218321979|emb|CAV17985.1| sensory box histidine kinase/response regulator [Vibrio splendidus
           LGP32]
          Length = 1462

 Score =  319 bits (817), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 89/402 (22%), Positives = 180/402 (44%), Gaps = 29/402 (7%)

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI----------INREGIILSTNRAVS 482
           +  E    +I +++ +     L ++ +   DG+ +          ++        +  VS
Sbjct: 563 MAAEIEQRKIAEQRAKAAEAHLQTLADNI-DGVVLKHIQTHPRQPLDI--RFSFVSAGVS 619

Query: 483 KLFGYPVEDI--LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
            +FG  V+++    +     + ++        + E +        E       +  +   
Sbjct: 620 DMFGLSVDNVKEHPQHLFDLIAEDDLPQFETSMLEAIETGH---WENEQRMQLESGQTKW 676

Query: 541 L-RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
           +          +  ++  + DI+  K+++  L +A++ AE  ++ KS FLA +SHE+RTP
Sbjct: 677 VKFNSQVSNSKTIEWNTVITDITLLKKQQQALDNARQKAESATAAKSQFLATISHEVRTP 736

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           ++ I+G  E+++  +     +   +     +++S   +L IVND+LD SKIE+GK++L+ 
Sbjct: 737 ISGILGLLELMQEHQL----SEELLNLHGGLNQSARNLLHIVNDVLDYSKIEAGKLDLNP 792

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHF 718
             + L + ++  +    ++A +K +        N+   + AD   + QI  N L+NAI F
Sbjct: 793 TEIELGKVLARIVQPQSIHAQQKGLAFHYWQDPNLAQWLFADDIRLHQILNNFLNNAIKF 852

Query: 719 TPSGG---QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T  G     I +   +   ++V L V DTG+G+     +   +PF Q+  +   R  GTG
Sbjct: 853 TEHGTISLHIDVIEQNEHQQKVSLTVSDTGIGIPKDRQQSLFQPFEQVDKTTSRRFGGTG 912

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGT--LIEIIFPLYDTSH 815
           LGL +A  +++   G   + S   KG+   + +  P     H
Sbjct: 913 LGLSIALKLIEQMDGNIELSSEEGKGSHFTVTVTLPTCTPEH 954


>gi|295086635|emb|CBK68158.1| GAF sensor signal transduction histidine kinase [Bacteroides
           xylanisolvens XB1A]
          Length = 926

 Score =  319 bits (817), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 98/520 (18%), Positives = 192/520 (36%), Gaps = 31/520 (5%)

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIE 361
           L        +   D  E L        P    +Y   G L   N   L +    +  D+ 
Sbjct: 413 LDSTGSVQANRALDRSEKLFKNIFANIPAGVEIYDKDGYLIDLNNKDLEIFGVVNKSDVI 472

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                        + D    + ++ +R +    +        + +R N + +     +  
Sbjct: 473 GVNFFENPNVPQGIRDRVRNEDLVDFRLN---YSFEQAGGYYETSRSNVIELYSKVSKLY 529

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA---IINREGIILSTN 478
           +          I  ++ +      ++         I +    G A   ++NR+G  +   
Sbjct: 530 DNEGNFSGYILISIDNTERIDAMNRIRDFENFFLMISDYAKVGYAKLNLLNRKGYAI--- 586

Query: 479 RAVSKLFGYPVEDILRKPFTVF--LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
           +   K  G   +  L +   V+  +          +   +     R+  +          
Sbjct: 587 KQWYKNLGEEEDIPLSEVVAVYSQMHPEDRKRFLDFYDGVR-DGKRRHFQGEMRIRRPGT 645

Query: 537 K--LLSLRIIIK-----KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
           K     +   +                  +DI+E K+ + +L  A+  AE     KS FL
Sbjct: 646 KNEWNWVSSNVMVTNYKPEENEIEIIGINYDITELKETEAELIQARDKAEMMDRLKSAFL 705

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
           A +SHEIRTPL AI+GFS+++              EY   +  +  L+L +++D+LD+SK
Sbjct: 706 ANMSHEIRTPLNAIVGFSDLLVETEELA----ERQEYIKIVRENNELLLQLISDILDLSK 761

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709
           IE+G        V ++    + +  + + A E+ + +       +  +++D   + Q+  
Sbjct: 762 IEAGTFEFTNGDVDVNLLCEDIVRSMGMKAKEE-VELVFDDHLPVCHVISDRNRIHQVIS 820

Query: 710 NILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
           N ++NA+ FT  G  I +        E+   V DTG+G+   +L    + F ++ +    
Sbjct: 821 NFVNNAMKFTSEGS-IHVGYKLKD-GELEFYVEDTGIGIEKEQLPHIFERFVKLNSFVH- 877

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
              GTGLGL + +++V+   G+  + S   KG+      P
Sbjct: 878 ---GTGLGLSICQSIVEQLGGRIGVDSEKGKGSRFWFTIP 914



 Score = 46.6 bits (109), Expect = 0.017,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 52/154 (33%), Gaps = 10/154 (6%)

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG-YP 488
             G+  +   +    R ++       +I      G+ I +++G ++  N    ++FG   
Sbjct: 408 IVGLFLDSTGSVQANRALDRSEKLFKNIFANIPAGVEIYDKDGYLIDLNNKDLEIFGVVN 467

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG---STKEEKLLSLRIII 545
             D++   F      N P  +   +     +D R        G    T    ++ L   +
Sbjct: 468 KSDVIGVNFFE--NPNVPQGIRDRVRNEDLVDFRLNYSFEQAGGYYETSRSNVIELYSKV 525

Query: 546 KKLPFSS----CYSLTMHDISEWKQEKNKLSHAK 575
            KL  +      Y L   D +E     N++   +
Sbjct: 526 SKLYDNEGNFSGYILISIDNTERIDAMNRIRDFE 559


>gi|167636243|ref|ZP_02394546.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0442]
 gi|167528358|gb|EDR91129.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0442]
          Length = 611

 Score =  319 bits (817), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 85/372 (22%), Positives = 159/372 (42%), Gaps = 25/372 (6%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +  +   E E  +L S+L   +DG+   +R+G I+  N    K+     E  L +     
Sbjct: 256 QQARSSTESERRKLSSVLSHMTDGVIATDRKGDIILLNDPAEKMLNVSRETALDQSVLEV 315

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
           L       ++H   E  S+ L  +                  +I K+   ++     ++D
Sbjct: 316 LGIQEEFTLDHLYEEPDSVLLDFSTRNEPYILRAS-----FSVIQKETGKANGLIAVLYD 370

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           ++                E+    + +F+A VSHE+RTPLT +  + E + +  +     
Sbjct: 371 VT--------------EQERIERERREFVANVSHELRTPLTTMRSYLEALTDGAWQDPNI 416

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
                +   I      ++ +VN LL +SK++S +  L  E V   +  +  I   +  + 
Sbjct: 417 APQ--FLTVIQEETERMIRLVNALLQLSKLDSTEHRLMKEWVDFTDFFNNIIDRFE-MSK 473

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV-IL 739
           E+ +  + SF+     I  D   + Q+  NI+SNA+ ++P GG +          E+  +
Sbjct: 474 EQNVSFKRSFSKKSRFIDMDTDKITQVLYNIISNALKYSPEGGTVT--YRLRDRGELLEI 531

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V D G+G+    ++K  + F ++  ++  +  GTGLGL +AK M++A+ G  +  S   
Sbjct: 532 SVSDQGMGIPKENVDKIFERFYRVDKARSRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEG 591

Query: 800 KGTLIEIIFPLY 811
           KGT I    P+ 
Sbjct: 592 KGTTIYFTLPMA 603


>gi|332637970|ref|ZP_08416833.1| histidine protein kinase; sensor protein [Weissella cibaria KACC
           11862]
          Length = 629

 Score =  319 bits (817), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 86/411 (20%), Positives = 173/411 (42%), Gaps = 35/411 (8%)

Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465
             + S  +     ++  Q  EN+    +  E+          E E  +L S+LE  +DG+
Sbjct: 229 QGDYSGGILVRSNDEIGQLAENVNALAVRIEETTNST-----EFERRRLDSVLEHMTDGV 283

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDI-LRKPFTVFLEQNTPSVMNHYLTEILSLDLR-Q 523
              +R G I   N A  ++ G     + + +     L+ +    +   L     L L   
Sbjct: 284 IATDRRGSINIINTAALQMTGIDDSTVAMGQSILEVLQISDRYNLRELLDNQEELLLDFS 343

Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
           T E+  +            +I +   F S   + +HD++E ++ + +             
Sbjct: 344 TDERQLIIRA------YFSLIQRASGFISGLVIVLHDVTEQQRIELE------------- 384

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
            +  F++ VSHE+RTPLT++  + + ++              +          ++ ++ND
Sbjct: 385 -RRQFVSNVSHELRTPLTSVKSYVDALQEGAID--DPEVARNFLAVAQDETTRMIHMIND 441

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN-----EKRILIRTSFANNIPRIL 698
           LL++S+++SG M L  E V++ E  +  ++   +        EK   I+         + 
Sbjct: 442 LLELSRMDSGTMKLETEYVNVGELFNYILNRFDMIIANDDKPEKYYTIKREIPKVQIWVE 501

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
            D     Q+  NI++NAI ++P GG +       + +EV+L + D G+G+   +L     
Sbjct: 502 LDTSKFTQVIDNIMNNAIKYSPDGGVVTARM-IDNQKEVVLSITDQGLGIPKKDLGHIFD 560

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            F ++  ++     GTGLGL ++K +++   G+ ++ S   +G+   I  P
Sbjct: 561 RFFRVDKARSRAQGGTGLGLAISKEIIERFGGRIWVESAEGQGSTFSISLP 611


>gi|312875839|ref|ZP_07735829.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311797320|gb|EFR13659.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor lactoaceticus 6A]
          Length = 575

 Score =  319 bits (817), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 88/368 (23%), Positives = 164/368 (44%), Gaps = 29/368 (7%)

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
             +L S+L++   GI   +    IL  NR    +              V       + + 
Sbjct: 235 RKRLTSLLDSLDIGIIFFDVNKRILMFNRGAENIL--------ETNLKVGFSLLECARVY 286

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI-IIKKLPFSSCYSLTMHDISEWKQEKN 569
                +   D+ +  E     + K  K L +    I            + DI+  K+ + 
Sbjct: 287 ELFEFLFQQDINEK-ELEVSINNKT-KFLKVSKKRISYEDNKEGVLFILSDITFLKKLE- 343

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
                          +SDF+A VSHE++TPLT+I GF E +K+            ++ N 
Sbjct: 344 -------------RIRSDFVANVSHELKTPLTSIKGFVETLKDGAID--DKDVATKFLNI 388

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I+     ++ ++NDLL +S+IE+  M +  E V + E V E+I L+++ A +K I +   
Sbjct: 389 IEVEVERLVRLINDLLYLSEIENAAMPILEEKVVVKEVVLESIELLKIKAEKKDIQLDVK 448

Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749
               +  +      +KQI +N++ NAI +    G++ ++   + +  V ++V+DTG+G+ 
Sbjct: 449 VQEGL-EMNIYRDWLKQIFINLIDNAIVYNKENGKVWVTVEKSDS-TVTIKVKDTGIGIP 506

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             E+E+  + F ++   +  +  GTGLGL + K +V+   GK ++ S    G+   +  P
Sbjct: 507 EKEIERIFERFYRVDKGRSRKLGGTGLGLSIVKHIVELYGGKVWVESQEGIGSEFTVTIP 566

Query: 810 LYDTSHPH 817
           +   + PH
Sbjct: 567 IVKKADPH 574


>gi|116619166|ref|YP_821322.1| multi-sensor signal transduction histidine kinase [Candidatus
            Solibacter usitatus Ellin6076]
 gi|116222328|gb|ABJ81037.1| multi-sensor signal transduction histidine kinase [Candidatus
            Solibacter usitatus Ellin6076]
          Length = 1088

 Score =  319 bits (817), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 105/765 (13%), Positives = 234/765 (30%), Gaps = 68/765 (8%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP----NNHIGDLLKRQNTW- 143
             DA G +   +E   +     A ++ G  L +V  I++        + +  +L+      
Sbjct: 347  TDAAGSIVFANEVAQRLTAWPAAEIGGRHLDEVFRIVNETTRETVESPVAKVLRMGTVVG 406

Query: 144  -YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
                T L   +G+   +PID +  PI   + +  G     +              +R   
Sbjct: 407  LANHTILLARDGS--EMPIDDSGAPIRGEDGDIQGT--VMVFREIAERKAAEKELERTAA 462

Query: 203  KFSHLHEIKKGHSSVEKEK----------------YDIFSQQSPPPHLRMKNKVSSLTEY 246
            +     +      +   +                  +  +  +         +   +   
Sbjct: 463  QTREARDWLARVLASIGDAVIATDGRGSVLFLNAVAESLTGWTAAEANGKPLEQVFVISN 522

Query: 247  YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
                  V       L   +   L  Q      +  +         +++ S      +   
Sbjct: 523  ANTGAAVESVVAKALREGQVQELQNQTVLTAKDGRRIPINDSAAPIRDQSGTVTGVVLVF 582

Query: 307  NH----PSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIE 361
                          E E    +     P   +   + G   Y N  +  LT Y   +   
Sbjct: 583  RDVTRSEQAEQELRERELRFRQLAGSMPQVVWTATADGTWDYVNERWTELTGYNLEEAQA 642

Query: 362  IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                           ++            RT    +     ++    N            
Sbjct: 643  GH------FRKEMPPEDAEAFARAEAEGLRTGTPYTLECRFLRRADGNLRWQLVRCVPIC 696

Query: 422  NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII-NREGIILSTNRA 480
            +Q    +       +  + +  + +M     +L ++L+AT   + I  + +   ++ NRA
Sbjct: 697  DQKGTVLRWYCSSTDIHEQKRAEEEMRFRAQELEAVLDATPVFLWITRDPDCREVTGNRA 756

Query: 481  VSKLFGYPV--------EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
             ++L G P         ++ +    T F    +   +     +  +   +   +      
Sbjct: 757  ANQLLGVPPGTNVSTSGKNGMPATVTRFKADGSEYQVEELPLQQAAALKKAVQDAEIEFR 816

Query: 533  TKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
              + + +     +  L  +            DI+E K  +  L        + +   + F
Sbjct: 817  FADGRRVFTVGNVAPLFDAAHRVRGCVGAFMDITERKLAQEAL-------IRANEDLNQF 869

Query: 589  LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
                SH+++ PL  I  +S+++ N     L         N+I +  + +  ++ DLL  +
Sbjct: 870  AFAASHDLQEPLRMITTYSQLLVNGFRDRLP-EEAELCVNFITQGTSRMRTLLADLLAYT 928

Query: 649  KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIA 708
            ++ +         V L     +AI  +Q    E    +R      +P +        Q+ 
Sbjct: 929  QVGADGDPTEM--VDLGAICRKAIDNLQTALQESHGEVRLE---PLPVVRGHGAHFLQLF 983

Query: 709  LNILSNAIHF-TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
             N++ NA+ +      +I IS+ +    E  + V D G+G+     ++    F ++    
Sbjct: 984  QNLIGNAVKYRAGEPPRIQISSAYE-GGEWRVAVADNGIGIEPQYYQRIFGVFKRLHG-- 1040

Query: 768  QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
                 GTG+GL + + +V+   G+ ++ S P KG+      P   
Sbjct: 1041 -RSIPGTGIGLAICQRVVERYGGRIWVESEPGKGSTFYFTIPAAR 1084



 Score = 88.9 bits (219), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 47/442 (10%), Positives = 112/442 (25%), Gaps = 37/442 (8%)

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247
           R  N      +R+  + + L        + ++       ++   P+ R    +       
Sbjct: 37  RQSNQSAVESERVQDEVNGLLAAMLDAETGQRGYLVTGQERYLEPYRRATQAIPGRLANL 96

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG---TLQNNSKESFEYLS 304
                    E   L    +    +  +       + +          L +  + + + + 
Sbjct: 97  ESALAGRPNETANLRRLNQLVELKLAELRRTIELRRSAGLQPALDVVLSDQGQRTMDEIR 156

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364
                  S         + E          V + G L         L    S  D     
Sbjct: 157 ALVLALESRESAVRAAASAEGEAAAQTALLVTTGGALLLMFFFAAGLEPIASPSDGAGRK 216

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYR------SDRTCIAASARLHTIQWNRENSLAMTFIPF 418
                  A  L+   A    M+        +    +   A L    +       ++ +  
Sbjct: 217 SRWLSYGAALLATLAATLLRMMLTPLVGPTALPFILYFPAVLFAAWYGGFRPGVVSIVFS 276

Query: 419 EKANQFPENMPQNGIEPEDV---------------------DTRINKRKMEIEVMQLCSI 457
             A  +  + PQ  I  E +                          ++    E  +    
Sbjct: 277 TIAAAYYFSAPQTAIRVELLIFVLVGFGMALLSNSQRLALQRADAAEQAERAERRRFEIT 336

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE---QNTPSVMNHYLT 514
           L +  D +   +  G I+  N    +L  +P  +I  +          + T   +   + 
Sbjct: 337 LSSIGDAVIATDAAGSIVFANEVAQRLTAWPAAEIGGRHLDEVFRIVNETTRETVESPVA 396

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNK 570
           ++L +     L   T+   ++   + +      +           +   +I+E K  + +
Sbjct: 397 KVLRMGTVVGLANHTILLARDGSEMPIDDSGAPIRGEDGDIQGTVMVFREIAERKAAEKE 456

Query: 571 LSHAKKIAEKESSHKSDFLARV 592
           L        +     +  LA +
Sbjct: 457 LERTAAQTREARDWLARVLASI 478



 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/271 (8%), Positives = 64/271 (23%), Gaps = 20/271 (7%)

Query: 74  FVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLC-DVSDILHIDPNNH 132
           F         +  W   A G    ++E   +  G    +        ++           
Sbjct: 602 FRQLAGSMP-QVVWTATADGTWDYVNERWTELTGYNLEEAQAGHFRKEMPPEDAEAFARA 660

Query: 133 IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192
             + L+    +  +         NL     +  +PI  +       R +           
Sbjct: 661 EAEGLRTGTPYTLECRFLRRADGNLR-WQLVRCVPICDQKGTV--LRWYCSSTDIHEQKR 717

Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKY--DIFSQQSPPPHLRMKNKVSSLTEYYAHK 250
                +   ++   + +       + ++    ++   ++    L +    +  T      
Sbjct: 718 AEEEMRFRAQELEAVLDATPVFLWITRDPDCREVTGNRAANQLLGVPPGTNVSTSGKNGM 777

Query: 251 DDVLKTEKYPLLTSEESSLPEQE-------------DFHTINLNQYTKKQYFGTLQNNSK 297
              +   K      +   LP Q+             +F   +  +         L + + 
Sbjct: 778 PATVTRFKADGSEYQVEELPLQQAAALKKAVQDAEIEFRFADGRRVFTVGNVAPLFDAAH 837

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
                +      +      E      E +++
Sbjct: 838 RVRGCVGAFMDITERKLAQEALIRANEDLNQ 868


>gi|254761651|ref|ZP_05213671.1| sensory box histidine kinase YycG [Bacillus anthracis str.
           Australia 94]
          Length = 613

 Score =  319 bits (817), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 85/372 (22%), Positives = 159/372 (42%), Gaps = 25/372 (6%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +  +   E E  +L S+L   +DG+   +R+G I+  N    K+     E  L +     
Sbjct: 258 QQARSSTESERRKLSSVLSHMTDGVIATDRKGDIILLNDPAEKMLNVSRETALDQSVLEV 317

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
           L       ++H   E  S+ L  +                  +I K+   ++     ++D
Sbjct: 318 LGIQEEFTLDHLYEEPDSVLLDFSTRNEPYILRAS-----FSVIQKETGKANGLIAVLYD 372

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           ++                E+    + +F+A VSHE+RTPLT +  + E + +  +     
Sbjct: 373 VT--------------EQERIERERREFVANVSHELRTPLTTMRSYLEALTDGAWQDPNI 418

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
                +   I      ++ +VN LL +SK++S +  L  E V   +  +  I   +  + 
Sbjct: 419 APQ--FLTVIQEETERMIRLVNALLQLSKLDSTEHRLMKEWVDFTDFFNNIIDRFE-MSK 475

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV-IL 739
           E+ +  + SF+     I  D   + Q+  NI+SNA+ ++P GG +          E+  +
Sbjct: 476 EQNVSFKRSFSKKSRFIDMDTDKITQVLYNIISNALKYSPEGGTVT--YRLRDRGELLEI 533

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V D G+G+    ++K  + F ++  ++  +  GTGLGL +AK M++A+ G  +  S   
Sbjct: 534 SVSDQGMGIPKENVDKIFERFYRVDKARSRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEG 593

Query: 800 KGTLIEIIFPLY 811
           KGT I    P+ 
Sbjct: 594 KGTTIYFTLPMA 605


>gi|213025313|ref|ZP_03339760.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Typhi str. 404ty]
          Length = 517

 Score =  319 bits (817), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 85/435 (19%), Positives = 177/435 (40%), Gaps = 17/435 (3%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L +          +L  +Q     +     I   +  +         ++ E
Sbjct: 81  EESRQRLSRLVQKLEEMRERDLKL-NVQLKDNIAQLNQEIADREKAEAELQETFEQLKVE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             +    + ++E +   L S L+A+ D +   N +      NRA+  L G   + ++   
Sbjct: 140 IKEREEAQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCY 554
                       +     ++   ++  T E+        +    +R +    ++      
Sbjct: 200 PEDVYSPEAAEKVIETDEKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGL 259

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+        +   E+ S  K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 260 MGFGRDITERKR-------YQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTD 312

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     +Y   I  S   + +I ND++D+ K+E  K+ L  +PV     +++  +L
Sbjct: 313 LTA----EQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFMADLENL 368

Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
             L A +K +         +P  ++ D   ++QI  N++SNA+ FT  G Q+ +   +  
Sbjct: 369 SGLQAQQKGLRFVLEPTLPLPHKVITDGTRLRQILWNLISNAVKFTQQG-QVTVRARYDE 427

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMGKF 792
            + +   V D+G+G+   E +K    + Q+ +S   +   GTG+GL +++ +     G  
Sbjct: 428 GDMLHFEVEDSGIGIPQDEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDI 487

Query: 793 YIFSTPAKGTLIEII 807
            + S P KG+   + 
Sbjct: 488 TVSSLPGKGSTFTLT 502


>gi|319946569|ref|ZP_08020803.1| sensor histidine kinase VicK [Streptococcus australis ATCC 700641]
 gi|319746617|gb|EFV98876.1| sensor histidine kinase VicK [Streptococcus australis ATCC 700641]
          Length = 448

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 91/403 (22%), Positives = 173/403 (42%), Gaps = 34/403 (8%)

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDT-RINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
           +         PE    +    +  +  R+    +E E  +L SIL   +DG+   NR G 
Sbjct: 56  YSDIIDLQGGPELTEISNNINDLSEVIRLTHENLEQETKRLTSILSYMTDGVLATNRRGQ 115

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
           I+  N   +K     VE+++       L  +    +   +T +  L +    E       
Sbjct: 116 IILVNEMAAKQLNVVVEEVMNISILDLLGISEEYELRDLITNVPELTIDSQDE------- 168

Query: 534 KEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
              + +SLR+    +   S +       +HD +E  +E+ +              +  F+
Sbjct: 169 -NGEYISLRVRFALIRRESGFISGLVAVLHDTTEQDKEERE--------------RRLFV 213

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
           + VSHE+RTPLT++  + E +     G +  P   E+        N ++ +V DLL +S+
Sbjct: 214 SNVSHELRTPLTSVKSYLEAL---DDGAISEPVAPEFVKVSLTETNRMMRMVTDLLSLSR 270

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLV---QLYANEKRILIRTSFANNIPRILADLRSVKQ 706
           I++    L  E  +    ++  ++     +  A EK+  I   +  +   +  D   + Q
Sbjct: 271 IDNETSQLDVELTNFTAFITFILNRFDKMKSQAGEKKYDIVRDYPISPVWVEIDTDKMTQ 330

Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
           +  NIL+NAI ++P GG+I +    T   ++I+ + D G+G+   +L +    F ++  +
Sbjct: 331 VLDNILNNAIKYSPDGGEIRVGMKTTD-AQLIISISDEGLGIPKKDLPRIFDRFYRVDKA 389

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +     GTGLGL +AK ++  + G  +  S   KG+   I+ P
Sbjct: 390 RSRAQGGTGLGLAIAKEIIKQHKGFIWAKSEYGKGSTFTIVLP 432


>gi|153216224|ref|ZP_01950328.1| sensor histidine kinase FexB [Vibrio cholerae 1587]
 gi|124114411|gb|EAY33231.1| sensor histidine kinase FexB [Vibrio cholerae 1587]
          Length = 604

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 87/387 (22%), Positives = 165/387 (42%), Gaps = 19/387 (4%)

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
            +E E       + ++      L S ++A+ D I   N +G     NRA+ +L G    +
Sbjct: 135 DLENEVYQREKTQVELAERTALLRSFIDASPDLIYYRNAKGEFSGCNRAMEELTGKRESE 194

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
           ++         +     +     ++ + +   T E+        +    LR +       
Sbjct: 195 LVGLTPWDVYRKEIAQSIVETDQQVFNNNTAITYEQWLEYPDGRKSFFELRKVPFYNKDG 254

Query: 552 S--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                     DI+E K+ +  L       EK S  K+ F++ +SHE+RTPL  I+G S +
Sbjct: 255 RHLGLVGFGRDITERKRHEESL-------EKASRDKTTFISTISHELRTPLNGIVGLSRM 307

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           + +            ++   I+ S   + +I ND++D+ K +  K+ L    ++ +E V+
Sbjct: 308 LLDTPLSG----EQRKHLQTINVSAVTLGNIFNDIIDMDKFDRRKLELFPAALNFEEFVA 363

Query: 670 EAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI-II 727
           E   L  L A +K +        ++P  +  D   ++Q+  N+LSNA+ FT  GG +  +
Sbjct: 364 EIEVLAALMAEQKGLRFDLERLTDLPSLVEVDSTRLRQVLWNLLSNAMKFTKEGGVVMTV 423

Query: 728 STTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGEGTGLGLPLAKAMV 785
           S    +   E+ + V DTG+G+   E EK    + Q+ + +      GTG+GL +++ ++
Sbjct: 424 SAECDAQHAEITIEVEDTGIGIPEAEQEKIFAMYYQVKSGKDNLHAVGTGIGLAVSRQLI 483

Query: 786 DANMGKFYIFSTPAKGTLIEIIF--PL 810
               G   + S    G+   +    PL
Sbjct: 484 KLMGGDISVNSEEGFGSTFTVTIRVPL 510



 Score = 44.6 bits (104), Expect = 0.072,   Method: Composition-based stats.
 Identities = 16/128 (12%), Positives = 34/128 (26%), Gaps = 3/128 (2%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           +A G     +  + +  G    +++G+   DV               +   NT       
Sbjct: 172 NAKGEFSGCNRAMEELTGKRESELVGLTPWDVYRKEIAQSIVETDQQVFNNNTAITYE-Q 230

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
           W           +L  +P Y+++    G  GFG               ++  +  +    
Sbjct: 231 WLEYPDGRKSFFELRKVPFYNKDGRHLGLVGFG--RDITERKRHEESLEKASRDKTTFIS 288

Query: 210 IKKGHSSV 217
                   
Sbjct: 289 TISHELRT 296


>gi|313157297|gb|EFR56722.1| PAS domain S-box protein [Alistipes sp. HGB5]
          Length = 743

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 122/670 (18%), Positives = 231/670 (34%), Gaps = 57/670 (8%)

Query: 177 GFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKE---------------- 220
           G + FG +    V     A    L+  +  + +  K    +                   
Sbjct: 97  GIKLFGYLQRVPVAGRKEADVLTLESNYYAVLKENKHMDELLDHLPIGYFRIRLLYDDDG 156

Query: 221 ---KYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHT 277
               Y   S       +   +    L +     D  +      L           + +H 
Sbjct: 157 QATDYLFLSVNQTAQQILGVDAADYLDKTAREIDIPVDRHIDELAAIRLGDYKMDQ-WHA 215

Query: 278 INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS 337
               +Y +   + T  + ++     L   +  +     DE E L    +   PI   +Y 
Sbjct: 216 SKTGRYCRSFLYNTPNDATEIVILILDITDVVTAHQALDEKEKLLRNVIQNAPIGIEIYD 275

Query: 338 -HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA 396
             G+L   N   L +        I           + ++ D          R        
Sbjct: 276 RTGHLVDINARDLEMFGVTDPAGIRGLSIFDNPNFSAEIKDCIREG-----RGTDFTTRY 330

Query: 397 SARLHTIQWN--RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
                   ++  R   +  T       N   E      I  ++ + R  + ++       
Sbjct: 331 DFSKARSYYDTSRSGYIDWTARIRCLYNDTGEITHYLLINIDNTELRQTQDRLTEFEALF 390

Query: 455 CSILEATSDGIA---IINREGIILSTNRAVSKLFGYPVEDILRKPF--TVFLEQNTPSVM 509
             I E    G     + N+EG          + +G      +         +  +  +V+
Sbjct: 391 RLISEYAQVGYINYNLCNKEG---YAQSVWLRNYGEADTAAIGDVIGKYRHIHPDDRTVL 447

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK-----KLPFSSCYSLTMHDISEW 564
            + L +  S +++            + +   ++  +                  +DI+  
Sbjct: 448 LNRLAQFESGEIQSA-SVSCRVLHDDGRTTWIKSHLICREYRPQEQVIDMLGINYDITAL 506

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           KQ + +L  AK+ AE+ +  K+ FLA +SHEIRTPL AI+GFS+++  +           
Sbjct: 507 KQTEQELIAAKERAEESNKLKTAFLANMSHEIRTPLNAIVGFSQLLTTEE----DPEVRK 562

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           EY + +  +  L+L I++D+LD+S+IESG  +L      L     EA+   +L   E   
Sbjct: 563 EYNDIVSLNNGLLLQIISDVLDLSRIESGHADLVRTRFDLRTLCREAVETFRLQTPE--- 619

Query: 685 LIRTSFANNIPRILADLRS--VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
            +       +P          + QI  N + NA+ FTP G  + +       + + L VR
Sbjct: 620 EVVLDVEKGLPSCTVCQYRQGLMQILANFIRNALKFTPKGF-VTVGFE-RKRDRLSLYVR 677

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG+G+   EL+K  + F ++        +GTGLGL + K++ +    +  + S   +G+
Sbjct: 678 DTGIGIPAEELDKIFERFYKVDTFT----QGTGLGLSICKSIAEQMGAQIGVDSAVGEGS 733

Query: 803 LIEIIFPLYD 812
              +  P+ +
Sbjct: 734 CFRVEMPIAE 743



 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 36/377 (9%), Positives = 96/377 (25%), Gaps = 23/377 (6%)

Query: 90  DAHGY-----LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144
           D  G         +++   + +G  A   +     ++   +    +      ++  +   
Sbjct: 153 DDDGQATDYLFLSVNQTAQQILGVDAADYLDKTAREIDIPVDRHIDE--LAAIRLGDY-- 208

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK---RLD 201
            K   W    T  Y    L   P  +            +V  ++  ++   L +   +  
Sbjct: 209 -KMDQWHASKTGRYCRSFLYNTPNDATEIVILILDITDVVTAHQALDEKEKLLRNVIQNA 267

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
                +++       +     ++F    P     +   +     + A   D ++  +   
Sbjct: 268 PIGIEIYDRTGHLVDINARDLEMFGVTDPAGIRGL--SIFDNPNFSAEIKDCIREGRGTD 325

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
            T+       +  + T              L N++ E   YL      +      +    
Sbjct: 326 FTTRYDFSKARSYYDTSRSGYIDWTARIRCLYNDTGEITHYLLINIDNTELRQTQDRLTE 385

Query: 322 TPETVDKCPI-PFFVYSHGNLF----YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
                          Y + NL     YA   +L          I    G           
Sbjct: 386 FEALFRLISEYAQVGYINYNLCNKEGYAQSVWLRNYGEADTAAIGDVIGK---YRHIHPD 442

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           D   +   +         +AS     +  +   +   + +   +     + +   GI  +
Sbjct: 443 DRTVLLNRLAQFESGEIQSASVSCRVLHDDGRTTWIKSHLICREYRPQEQVIDMLGINYD 502

Query: 437 DVDTRINKRKMEIEVMQ 453
               +  ++++     +
Sbjct: 503 ITALKQTEQELIAAKER 519


>gi|254831077|ref|ZP_05235732.1| two-component sensor histidine kinase [Listeria monocytogenes
           10403S]
          Length = 591

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 83/369 (22%), Positives = 173/369 (46%), Gaps = 31/369 (8%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           +++    +L +I++    G+ +IN +  ++ TNR + ++ G    +I  KPF   ++   
Sbjct: 246 EIKQNEQRLNAIVQNLVSGVMLINVDKQVIMTNRTMYQILG--ETEITGKPFYEVIKSFA 303

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISE 563
            S +        + + +   +K  +     E +L   +              L +HDI++
Sbjct: 304 LSQLIEA-----TFETKTIQQKEIILYFPREMILDASVSPILGENGEITGIILLLHDITQ 358

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            +  +N               +S+F+  VSHE++TP+TA+ GF+E + +   G + +   
Sbjct: 359 IRHLENV--------------RSEFVTNVSHELKTPVTALKGFAETLLD---GAMYDEML 401

Query: 624 -IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             ++   I    + +  ++ D+L +S+IE   +  + E V +D+ + ++   +   A EK
Sbjct: 402 LKKFLTIIKEESDRLHRLIMDILALSRIEQNPVPENVELVEVDDVIEQSARTIFEMATEK 461

Query: 683 RILIRTSFANNIPRI--LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
            I +       IP +    D   ++QI +N+LSNAI++TP  G++ +        EVI+ 
Sbjct: 462 NIQVII-PEKTIPSVTIETDRDKLQQILINLLSNAINYTPVDGKVEVKL-IEQEAEVIIE 519

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V D G+G+   ++++  + F ++  ++     GTGLGL + K +V+   G+  + S    
Sbjct: 520 VTDNGIGIPAKDIDRVFERFYRVDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEV 579

Query: 801 GTLIEIIFP 809
           G+   +  P
Sbjct: 580 GSTFRVTLP 588


>gi|301057596|ref|ZP_07198676.1| PAS domain S-box protein [delta proteobacterium NaphS2]
 gi|300448320|gb|EFK12005.1| PAS domain S-box protein [delta proteobacterium NaphS2]
          Length = 1052

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 91/390 (23%), Positives = 163/390 (41%), Gaps = 16/390 (4%)

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
                +     +       +E     L         G   ++     L+ +  V ++F  
Sbjct: 346 ALWAELRRRRDELMRTTEILESSEKALRQAQHLARLGSWTLDHTSQKLTWSAEVYRIFEI 405

Query: 488 PVEDIL--RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
             E      + F   +       +       +       +E   L   K+ ++  +    
Sbjct: 406 DPEAFQPDYQHFFDTIHPEDREQVQQVFESSVREHQPYFIEHRLLL--KDGRIKFVEERG 463

Query: 546 KKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
             L          S T+ DI+E K+ +     A+  AE+ ++ KS+FLA +SHEIRTP+ 
Sbjct: 464 VTLFDDKGRPLTSSGTVMDITERKETERLQQEARDRAERANAAKSEFLANMSHEIRTPMN 523

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           A+IGF++++ +     +     ++YA  I +SG  ++ ++ND+LD SKIE+G ++     
Sbjct: 524 AVIGFTDLLLDSGLDDI----QMDYAKTIKQSGEGLISLINDILDFSKIEAGDLDFEEID 579

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTP 720
              +    +   +++    EK I I     + +P  I  D   V+Q+  N+++NA  FT 
Sbjct: 580 FDPELLAYDICDMIRPRIGEKPIEILCHIGDTVPDHIKGDPTRVRQVLTNLMANAPKFTE 639

Query: 721 SGG-QIIISTTHTSNEEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
           +G  ++ +         V L   VRDTG+G+   +LE    PF Q   S   +  GTGLG
Sbjct: 640 AGEIELSLDVEEEDEGRVKLHASVRDTGIGIAGNKLELIFDPFQQADGSTTRKYGGTGLG 699

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           L + K +     G  +  S   KG++    
Sbjct: 700 LSICKQISRLMGGDVWAESDEGKGSIFHFT 729


>gi|241888981|ref|ZP_04776285.1| sensor protein kinase WalK [Gemella haemolysans ATCC 10379]
 gi|241864230|gb|EER68608.1| sensor protein kinase WalK [Gemella haemolysans ATCC 10379]
          Length = 642

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 79/402 (19%), Positives = 168/402 (41%), Gaps = 32/402 (7%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKM-EIEVMQLCSILEATSDGIAIINREGIILS 476
               +   E      +  +       ++ + E E  +L +I+E+  DGI   +  G I+ 
Sbjct: 254 VVGIDTDDEIGDLAKVFNQISKRIEEEQAVTETERRKLATIIESMMDGIITTDNNGRIIL 313

Query: 477 TNRAVSKLFGYPVEDI-LRKPFTVFLEQNTPSVMNHYLTE-------ILSLDLRQTLEKI 528
            N +   + G   ++I + K     L       +   L             D    L   
Sbjct: 314 INTSAEDMLGGRNDEIFIGKDVLKILNITEYESIEEILEAEDSLLVNASKSDEELLLRAE 373

Query: 529 TLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
                KE+K    ++          Y + ++D+++ ++++ +              + +F
Sbjct: 374 ISKIEKEDKEDLTQMS----TELEGYIIVLYDVTDQERQEKE--------------RREF 415

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
           ++ VSHE+RTPLT +  + E ++             ++ + I +    ++ +VN+L+ + 
Sbjct: 416 VSTVSHELRTPLTTMNSYIEALEEGVL--EDKELAPQFIDTIHKETTRMIRMVNELMQLG 473

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIA 708
           K++  + +   E + +++ + +      L   EK          +   +  D   + Q+ 
Sbjct: 474 KMDIKEEHYEKEFIDINKMLEQITDRFALTHPEKN--FIKHIPKSPIFVEGDQDKLTQVF 531

Query: 709 LNILSNAIHFTPSGGQIIISTTHT-SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
            NI++NAI ++P+G  I +       +  V + ++D GVG+    ++K    F ++  S+
Sbjct: 532 DNIVNNAIKYSPNGKNITVRVRQNYHHNRVSISIKDEGVGIPLVHIDKIFNRFYRVDKSR 591

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           Q    GTGLGL LAK +V+A+ G+ +  S    G++I +  P
Sbjct: 592 QRSMGGTGLGLALAKTIVEAHKGRIWAQSREGYGSIIFVTLP 633



 Score = 38.1 bits (87), Expect = 6.3,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 10/72 (13%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKM-IGMRLCDVSDILHIDPNNHIGDLLKRQNTW---- 143
            D +G +  I+      +G    ++ IG    DV  IL+I     I ++L+ +++     
Sbjct: 305 TDNNGRIILINTSAEDMLGGRNDEIFIGK---DVLKILNITEYESIEEILEAEDSLLVNA 361

Query: 144 --YGKTTLWPIE 153
               +  L   E
Sbjct: 362 SKSDEELLLRAE 373


>gi|77917671|ref|YP_355486.1| two component sensor histidine kinase [Pelobacter carbinolicus DSM
           2380]
 gi|77543754|gb|ABA87316.1| PAS/PAC sensor signal transduction histidine kinase [Pelobacter
           carbinolicus DSM 2380]
          Length = 867

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 97/522 (18%), Positives = 204/522 (39%), Gaps = 39/522 (7%)

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-----GNLFYANPSFLLLTKYKSVDDI 360
           R          + E      ++  P+   +          L  +N +   + K   +D +
Sbjct: 370 RQRLEAEEALRKSEESFRNIINFSPMGVLLLHLYPNNQLILTGSNTAAKDILKV-DLDAL 428

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS-ARLHTIQWNRENSLAMTFIPFE 419
                       P L+     +      +  T              +      +      
Sbjct: 429 VGKTIEEAF---PGLTKTCVPEQYRRVCTLGTPWHCQQIDYKEPPIHGS--YEVHAFQTA 483

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
                      +     +   +           QL +IL++ SDG+   + +  I+  + 
Sbjct: 484 PRRMACFFWNISERIQAEQAIKEALTNARQAREQLETILKSVSDGLLFTDLDNRIMLMSH 543

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
           +  +L G P+ D+     +  ++ +T       +      +    +     G+ K  + +
Sbjct: 544 SAEELLGVPLHDVFGLQVSQVIDNDTLLKRLQAVASDKQEETSVIINLPEPGTDK-VQTV 602

Query: 540 SLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
              +   +            + DIS  +              +    K++F++  +HE+R
Sbjct: 603 QASLAAVRSEEGLKRGVITLLRDISRER--------------ELDLMKTEFISTAAHELR 648

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK-MN 656
           TPLT++IGFSEV+  Q        +  E+ + I +   ++  IV DLLD++++++G+ + 
Sbjct: 649 TPLTSVIGFSEVMLQQGG---LTEQQTEFLSIIHKKAEVLGKIVEDLLDLARVDTGQVIR 705

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716
           L  +   ++  ++ ++S  +    + R   +T   +    +L D R + Q+  N+LSNA+
Sbjct: 706 LKKDWADVNGILARSVSDYRRVCQDHR--FKTVLPDAPIEMLVDDRKLFQVMENLLSNAV 763

Query: 717 HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
            F+P    I ++     N E+ + V D G+GM   ++++    F ++  S   R EG GL
Sbjct: 764 KFSPVDSLIQVTCQLADN-ELYIAVSDQGIGMQPAQIDRMFDKFYRVDASNTAR-EGLGL 821

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD--TSHP 816
           G+ + K++V+A+ G+ ++ S P +GT +    P  D   SHP
Sbjct: 822 GMAIVKSIVEAHNGRIWVTSKPNRGTTVTFTLPYTDNLESHP 863



 Score = 43.5 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 25/198 (12%), Positives = 57/198 (28%), Gaps = 30/198 (15%)

Query: 40  KKENPCHDSFEQSNFTDQN--------------------QESVSNTNYLDSENTFVFDPI 79
            KE P H S+E   F                        +E+++N      +   +   +
Sbjct: 466 YKEPPIHGSYEVHAFQTAPRRMACFFWNISERIQAEQAIKEALTNARQAREQLETILKSV 525

Query: 80  PRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR 139
              + F    D    +  +S    + +G     + G+++  V D   +     +  +   
Sbjct: 526 SDGLLF---TDLDNRIMLMSHSAEELLGVPLHDVFGLQVSQVIDNDTLLK--RLQAVASD 580

Query: 140 QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199
           +          P  GT+    +  +   + S           G++ + R  +  R L   
Sbjct: 581 KQEETSVIINLPEPGTDKVQTVQASLAAVRSEEG-----LKRGVITLLRDISRERELDLM 635

Query: 200 LDKKFSHLHEIKKGHSSV 217
             +  S      +   + 
Sbjct: 636 KTEFISTAAHELRTPLTS 653


>gi|16762090|ref|NP_457707.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Typhi str. CT18]
 gi|29143579|ref|NP_806921.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
 gi|213053137|ref|ZP_03346015.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Typhi str. E00-7866]
 gi|213857504|ref|ZP_03384475.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Typhi str. M223]
 gi|289826616|ref|ZP_06545638.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-3139]
 gi|25301091|pir||AG0906 aerobic respiration control sensor protein [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16504393|emb|CAD07845.1| aerobic respiration control sensor protein [Salmonella enterica
           subsp. enterica serovar Typhi]
 gi|29139214|gb|AAO70781.1| aerobic respiration control sensor protein [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
          Length = 778

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 85/435 (19%), Positives = 177/435 (40%), Gaps = 17/435 (3%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L +          +L  +Q     +     I   +  +         ++ E
Sbjct: 81  EESRQRLSRLVQKLEEMRERDLKL-NVQLKDNIAQLNQEIADREKAEAELQETFEQLKVE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             +    + ++E +   L S L+A+ D +   N +      NRA+  L G   + ++   
Sbjct: 140 IKEREEAQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCY 554
                       +     ++   ++  T E+        +    +R +    ++      
Sbjct: 200 PEDVYSPEAAEKVIETDEKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGL 259

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+        +   E+ S  K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 260 MGFGRDITERKR-------YQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTD 312

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     +Y   I  S   + +I ND++D+ K+E  K+ L  +PV     +++  +L
Sbjct: 313 LTA----EQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFMADLENL 368

Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
             L A +K +         +P  ++ D   ++QI  N++SNA+ FT  G Q+ +   +  
Sbjct: 369 SGLQAQQKGLRFVLEPTLPLPHKVITDGTRLRQILWNLISNAVKFTQQG-QVTVRARYDE 427

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMGKF 792
            + +   V D+G+G+   E +K    + Q+ +S   +   GTG+GL +++ +     G  
Sbjct: 428 GDMLHFEVEDSGIGIPQDEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDI 487

Query: 793 YIFSTPAKGTLIEII 807
            + S P KG+   + 
Sbjct: 488 TVSSLPGKGSTFTLT 502


>gi|332307454|ref|YP_004435305.1| multi-sensor hybrid histidine kinase [Glaciecola agarilytica
            4H-3-7+YE-5]
 gi|332174783|gb|AEE24037.1| multi-sensor hybrid histidine kinase [Glaciecola agarilytica
            4H-3-7+YE-5]
          Length = 1224

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 103/562 (18%), Positives = 204/562 (36%), Gaps = 24/562 (4%)

Query: 264  SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
             E+   P +      N++   K +     Q N+ E     +  N    +      E+   
Sbjct: 523  GEDEGKPTRMLGIVANISDRKKNEALQMAQTNALELMAQEAPLNDVLATLILSLEEHSEN 582

Query: 324  ETVDKCPIPFFVYSHGNLFYAN-----PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
              +    I         L +A       +++       +D    A G S     P    +
Sbjct: 583  NML--ASIMLVDEQSDTLQFAAGPSLPATYIEQINDLKIDAERGACGASAATREPVFVPD 640

Query: 379  NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG------ 432
             A +P+     D           ++       +   F  +    Q P+ M  +       
Sbjct: 641  IASEPLWENYQDLALQHGLKACWSLPILSGKEILGVFAMYYPTPQSPDKMDYDSLDIIMR 700

Query: 433  IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
                 +  R N+R + +   +  ++++       + N +G I   N+      G  +E  
Sbjct: 701  TAELVIKRRQNERSLRLSEERFRAVVDNVPQLAWMANAQGEIEWFNQRWLSYTGTTLEQN 760

Query: 493  LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
            L   +           +       L   +    E        + K       +  +   +
Sbjct: 761  LNGGWKAHHHPAHEEAVFAKFAASLEQGI--DWEDTFPLRGADGKFRWFLSRMNAIYDQN 818

Query: 553  C----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                 +  T  DI+E ++   KL+            K +F+A ++HE+R PL  +    E
Sbjct: 819  GKLIRFFGTNTDITEQRKMAEKLTKLTNKLSTADKRKDEFIATLAHELRNPLAPLRNSME 878

Query: 609  VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
            +I+N +  P            ++R    ++ +++DLLDIS+I   K++L  + V L + V
Sbjct: 879  LIRNLQTDPAS---MQTALTTMERQVTQMVRLIDDLLDISRISKDKLSLKRQHVVLKDIV 935

Query: 669  SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
              A+ +V  YAN  +  ++ +       + AD   + Q+  N+L+NA  +TP  G I ++
Sbjct: 936  EHAVEVVTPYANRLKHTVQINLPEQPIHLFADPARLAQVLGNLLNNACKYTPKSGFISLT 995

Query: 729  TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
             T +   +V + V+D G+G+    L +    F Q+    +    G G+GL L + +V+ +
Sbjct: 996  VTQSDE-QVHISVKDNGLGIEQEMLNQVFDLFTQVDQHLEQSEGGLGIGLSLVQRLVEMH 1054

Query: 789  MGKFYIFS-TPAKGTLIEIIFP 809
             G     S    +G+   +  P
Sbjct: 1055 GGHVNCISDGLGRGSEFIVSLP 1076



 Score = 44.2 bits (103), Expect = 0.080,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 70/237 (29%), Gaps = 11/237 (4%)

Query: 70  SENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP 129
           SE  F         +  W  +A G ++  ++      G    + +           H + 
Sbjct: 718 SEERFRAVVDNVP-QLAWMANAQGEIEWFNQRWLSYTGTTLEQNLNGGWKAHHHPAHEEA 776

Query: 130 N-NHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNR 188
                   L++   W     L   +G   +    + A  IY +N +    R FG      
Sbjct: 777 VFAKFAASLEQGIDWEDTFPLRGADGKFRWFLSRMNA--IYDQNGKLI--RFFGTNTDIT 832

Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA 248
                     +L  K S   + K    +    +        P   LR   ++    +   
Sbjct: 833 EQRKMAEKLTKLTNKLSTADKRKDEFIATLAHELRN-----PLAPLRNSMELIRNLQTDP 887

Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
                  T     +T     + +  D   I+ ++ + K+    L++  + + E ++ 
Sbjct: 888 ASMQTALTTMERQVTQMVRLIDDLLDISRISKDKLSLKRQHVVLKDIVEHAVEVVTP 944



 Score = 42.7 bits (99), Expect = 0.24,   Method: Composition-based stats.
 Identities = 13/118 (11%), Positives = 41/118 (34%), Gaps = 5/118 (4%)

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           +LE  +  + ++  +GI+   N+           +++  PF      +    +   + + 
Sbjct: 140 VLERFAVFMGVMTPDGILREANKTALVSASLTESEVIGLPFEQTYWWSHDPQVQQVIRKA 199

Query: 517 LSLDLRQTLEK-ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM----HDISEWKQEKN 569
           ++        +  T     +  L+ L  ++  +       + +     DI+  K+ + 
Sbjct: 200 INKAKHGMSSRFDTTAKLADNVLIDLDFMLHPIFDEHGSVVQLIPSGIDITNRKRTER 257


>gi|283851669|ref|ZP_06368948.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           sp. FW1012B]
 gi|283572999|gb|EFC20980.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           sp. FW1012B]
          Length = 866

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 113/782 (14%), Positives = 243/782 (31%), Gaps = 70/782 (8%)

Query: 62  VSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV 121
            S  + +     F       +  F    D        +E   +  G      +G  + + 
Sbjct: 112 PSAASSVADSRLFGVLDHVPSAAFV--ADRDFRFLYANEAFARLHGRGVGDFVGRGMAET 169

Query: 122 SDILHIDPNNHIG-DLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRG 180
            D  +      +   +L+R      +  +   +G   ++      LP+ +   E   F  
Sbjct: 170 VDPQNFARFKQVALSVLRRGKAEEDEIRIDFGDGEKTFL---ATCLPLANAVGEVDAF-- 224

Query: 181 FGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP--PHLRMKN 238
              +                 +++  + E +         +               R   
Sbjct: 225 CSTLTETTAHRRVEQELDASRRRYQAIVEDQTELVVRLDPELRRIFVNQAAARFSGRPVE 284

Query: 239 KV--SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS 296
            +      E     +     ++   L+        +   H  +  +         + +++
Sbjct: 285 ALLGGPFLERVPEVEAKALRQRILALSPRAPVCDIRHLLHRPDGLELCLNWTVRAIFDDA 344

Query: 297 KESFEYLSHRNHP----SLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLL 351
               EY +          +     + E    +  +      F +   G +   NP+   +
Sbjct: 345 GRVREYQAMGRDVTAYWRMERELVKSETKYRDIFEHSAEGIFQFEPTGTMLACNPALARI 404

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411
             Y S +++ +  G   L    +   ++ ++ + L             +  ++ +   + 
Sbjct: 405 LGYGSAEEVMLEQG--DLFRRIQARQDDRLEFLRLLALQGRVFDFE--MQVVRRDGRTA- 459

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471
            ++       ++        G   +  D +      E E M L S ++ +++G+ I++R+
Sbjct: 460 WLSVNARAVMDESGRLARVEGAARDITDRKRA----EEERMLLVSAVDQSAEGLVIVSRD 515

Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
             +   N A +++     E   R      L     + +   + ++L L LR +       
Sbjct: 516 FRLEYANPAFAQIIAGGQETAGRLDLEAPLA----AFLGESVRKMLGLGLRWSGRVRVAR 571

Query: 532 STKEEKLLSLRIIIKKLPFSSCY--SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
               E +    I   +          + + D++     + +L   +K+            
Sbjct: 572 PGGGEGVAETLISPVRDATGQIVNHIMLVRDMTYEVGLEKRLRQVEKL-----EAIGVLA 626

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
             V+H+    LT I+  +E+I      P  +P   +    + R+     D+V  LL  S+
Sbjct: 627 GGVAHDFNNILTPILLNTEMILADI--PWKDP-LRKPLADVVRASERARDLVRQLLTFSR 683

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709
               +  L   P+ L   V E + L +      R+ IR   +     I AD   + Q+ +
Sbjct: 684 ----QGELTVGPLPLTPLVKETVKLARGMVEA-RVEIRPKVSELALTIEADPAQIHQVLM 738

Query: 710 NILSNAIHFTPSGGQIIISTT---------------------HTSNEEVILRVRDTGVGM 748
           N+  NA    P GG + +                                + V DTG GM
Sbjct: 739 NLCLNAAQAMPGGGVMEVGLAAVPEPPRQAGPSIAAGLPLAGLAPGPYARVWVSDTGHGM 798

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
                E+  +PF          G+GTG+GL     +V    G   + S   +G+L E+  
Sbjct: 799 APDIGERIFEPFFTTKKP----GQGTGMGLAAVHGIVKGCGGAVLVTSEVGRGSLFEVFL 854

Query: 809 PL 810
           PL
Sbjct: 855 PL 856



 Score =  129 bits (325), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 59/508 (11%), Positives = 140/508 (27%), Gaps = 46/508 (9%)

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
           P++     V  + +  P+  R     G R  G+V V      P A     D +   + + 
Sbjct: 80  PLDTGQAAVTAEASCAPLPGR-----GPRPAGVVCVF-----PSAASSVADSRLFGVLDH 129

Query: 211 KKGHSSVEKEKYDIFSQQSPPP---HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
               + V    +                + + V           +  + ++  L      
Sbjct: 130 VPSAAFVADRDFRFLYANEAFARLHGRGVGDFVGRGMAETVDPQNFARFKQVALSVLRRG 189

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKES----FEYLSHRNHPSLSAYFDEGENLTP 323
              E E        + T       L N   E             H  +    D       
Sbjct: 190 KAEEDEIRIDFGDGEKTFLATCLPLANAVGEVDAFCSTLTETTAHRRVEQELDASRRRYQ 249

Query: 324 ETV-DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
             V D+  +   +       + N +    +  + V+ +     L        + +  A  
Sbjct: 250 AIVEDQTELVVRLDPELRRIFVNQAAARFSG-RPVEALLGGPFLER------VPEVEAKA 302

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
                 +           H +       L + +      +          +  +      
Sbjct: 303 LRQRILALSPRAPVCDIRHLLHRPDGLELCLNWTVRAIFDDAGRVREYQAMGRDVTAYWR 362

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            +R++     +   I E +++GI      G +L+ N A++++ GY   + +         
Sbjct: 363 MERELVKSETKYRDIFEHSAEGIFQFEPTGTMLACNPALARILGYGSAEEVMLEQGDLFR 422

Query: 503 --QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM-- 558
             Q        +L  +      +  +       ++ +   L +  + +   S     +  
Sbjct: 423 RIQARQDDRLEFLRLLALQG--RVFDFEMQVVRRDGRTAWLSVNARAVMDESGRLARVEG 480

Query: 559 --HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR----TPLTAIIGFSEVIKN 612
              DI++ K+ + +    + +        ++ L  VS + R     P      F+++I  
Sbjct: 481 AARDITDRKRAEEE----RMLLVSAVDQSAEGLVIVSRDFRLEYANP-----AFAQIIAG 531

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            +            A ++  S   +L +
Sbjct: 532 GQETAGRLDLEAPLAAFLGESVRKMLGL 559


>gi|237730129|ref|ZP_04560610.1| aerobic respiration control sensor protein ArcB [Citrobacter sp.
           30_2]
 gi|226908735|gb|EEH94653.1| aerobic respiration control sensor protein ArcB [Citrobacter sp.
           30_2]
          Length = 783

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 84/435 (19%), Positives = 176/435 (40%), Gaps = 17/435 (3%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L +          +L  +Q     +     I   +  +         ++ E
Sbjct: 86  EESRQRLSRLVQKLEEMRERDLKL-NVQLKDNIAQLNQEIVEREKAEAERQETFEQLKVE 144

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             +    + ++E +   L S L+A+ D +   N +      NRA+  L G   + ++   
Sbjct: 145 IKEREEAQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVNLK 204

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCY 554
                       +     ++   ++  T E+        +    +R +    ++      
Sbjct: 205 PADVYSPEAAEKVIETDEKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGL 264

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+        +   E+ S  K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 265 MGFGRDITERKR-------YQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTD 317

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     +Y   I  S   + +I ND++D+ K+E  K+ L  +P+     +++  +L
Sbjct: 318 LTA----EQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPIDFTSFMADLENL 373

Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
             L A +K +         +P  ++ D   ++QI  N++SNA+ FT  G Q+ +   +  
Sbjct: 374 SGLQAQQKGLRFVLEPTLPLPHKVITDGTRLRQILWNLISNAVKFTQQG-QVTVRARYDQ 432

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMGKF 792
              +   V D+G+G+   E +K    + Q+ +S   +   GTG+GL ++K +     G  
Sbjct: 433 GNMLHFEVEDSGIGIPQDEQDKIFAMYYQVKDSNGGKPATGTGIGLAVSKRLAKNMGGDI 492

Query: 793 YIFSTPAKGTLIEII 807
            + S   KG++  + 
Sbjct: 493 TVSSQAGKGSIFTLT 507


>gi|223935287|ref|ZP_03627205.1| multi-sensor signal transduction histidine kinase [bacterium
            Ellin514]
 gi|223896171|gb|EEF62614.1| multi-sensor signal transduction histidine kinase [bacterium
            Ellin514]
          Length = 1057

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 103/781 (13%), Positives = 243/781 (31%), Gaps = 94/781 (12%)

Query: 88   NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGK 146
              DA G +  ++    + +G    +++ M + +V++   +    + +  L +   ++  +
Sbjct: 307  QADAEGQMTLVNRRWCEMLGYTEAELLTMNIAEVTEGESLRATLSAVHRLAEGGPSFDME 366

Query: 147  TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                  +G+  +    + A  +     E+ G     +V             +R       
Sbjct: 367  KRYKRKDGSTFWASSSVNA--VRGPAGEYQGL--VAVVLDISERKRAEERERRAATDALE 422

Query: 207  LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY-----------------AH 249
              ++     ++ ++        S    +   N+++ +   +                   
Sbjct: 423  AAKVNANFRTLFEQGTYFAGVMSLDGTVVEANRIALVACGFKKEEVIGKKFWDCGWWNRS 482

Query: 250  KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES----FEYLSH 305
               +    K     +E +   ++  +   + +Q          +++S +           
Sbjct: 483  PALMEMVRKASQQAAEGNIFRQESPYFVADGSQRFVDLSIAPAKDDSGQVVFLIPTGTDI 542

Query: 306  RNHPSLSAYFDEGENLTPETVDKCPIPFFV----YSHG------NLFYANPSFLLLTKYK 355
                       E E       +     F +    +  G           NP+F   T +K
Sbjct: 543  TERKRAEEALRESEERYRTLFESMDEGFCIIEVIFDAGQRPMDYRFLEINPAFEKQTGFK 602

Query: 356  SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
                         + +     + N  +               ++   +         +  
Sbjct: 603  DA-------KGRRMREMAPEHEQNWFETFGNVALTGQPARFESQATAL----GRWFEVHA 651

Query: 416  IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII-----NR 470
                   + PE      +  +  + R     +     +  ++  +  +G  +I     +R
Sbjct: 652  FSV----EMPERHRVGVVFSDITERRRVVEAVREVGERYQTLFNSIDEGFCVIEVHFDDR 707

Query: 471  ----EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
                +   L TN A +K  G    +         +             ++ S       E
Sbjct: 708  NRAQDYRFLETNPAFAKQTGIKAAEGRWMR---EIAPEHEEHWYEIYGKVSSSGESVRFE 764

Query: 527  KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
                      +   +       P     ++   DISE K+ +  L  A+    +++    
Sbjct: 765  NRAGALN---RWFDVFAFRIGEPEQRKVAILFTDISERKKAEIALKEAQMALARQNEFLD 821

Query: 587  D------------------FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
                               F   +SH++R+PL A+ G++E +       L + +   Y  
Sbjct: 822  QTVQQRTAKLQETIMELEAFSYSISHDMRSPLRAMQGYAEALLQDYQSNL-DDQAKHYLE 880

Query: 629  YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
             I RS   +  +V D+L  SK+  G M +    ++L+  + + +       +  RI +  
Sbjct: 881  RIHRSAARLDLLVRDVLAYSKVAKGDMQMK--TINLEHLIGDIVQNY-PNLHSSRIQVT- 936

Query: 689  SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-EVILRVRDTGVG 747
              A+  P ++     + QI  N+L NA+ F+  G    ++ +  +   +V +   D G+G
Sbjct: 937  --ASPFPPVIGHEGLLTQIVSNLLGNAVKFSYPGQLPEVAISAETMGPDVRIWFADKGIG 994

Query: 748  MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
            +     E+    FG++      + EGTG+GL + +   +   G   + S   KG+   I 
Sbjct: 995  IAPEHHEQIFHIFGRVYPD--KKYEGTGIGLAIVRKAAERMGGSAGVVSELGKGSQFWIT 1052

Query: 808  F 808
             
Sbjct: 1053 L 1053



 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 48/563 (8%), Positives = 146/563 (25%), Gaps = 80/563 (14%)

Query: 89  IDAHGYLKEISEELPKTI---GNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
           +D +  L  ++    +     G    ++IG       +    +    + +   R++    
Sbjct: 22  VDGNWRLTYMNPAARRIFTDQGLKVEELIGKHF---WNEAFPETRGTLIEQEYRRSMTER 78

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
            +  +            +   P+       S +  F  +   ++  +       L KK +
Sbjct: 79  VSGEFDYYLRAWQRWFAIRVYPV--EAGGISIY--FHDITKRKLTEERATFLASLSKKLA 134

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY------ 259
            + E ++      +      +         ++++   L  +  H+      E        
Sbjct: 135 SVTEEEQIIRITVEAVGRHLNADRCYFVECLEHENRILIGHNWHRSTSSSIEGAMSLFDF 194

Query: 260 --------------PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN---------- 295
                          +   E   L  ++  + + +   +        +            
Sbjct: 195 GGIDWWHQYSQGDFAVEDVETEPLTREKAANYVTVGVRSYAVQPCRREGEWTVVLGVTES 254

Query: 296 -------------SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNL 341
                                             + E      V +           G +
Sbjct: 255 FPRKWTADELSLMDDVIARVWPLVERARADQALRKSEARFRAIVSQATTGVVQADAEGQM 314

Query: 342 FYANPSFLLLTKYKSVDDI--------EIAGGLSTLLDAPKLSDNNAIKPVMLY--RSDR 391
              N  +  +  Y   + +        E     +TL    +L++      +     R D 
Sbjct: 315 TLVNRRWCEMLGYTEAELLTMNIAEVTEGESLRATLSAVHRLAEGGPSFDMEKRYKRKDG 374

Query: 392 TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV 451
           +   AS+ ++ ++        +  +  + + +      +     + ++            
Sbjct: 375 STFWASSSVNAVRGPAGEYQGLVAVVLDISERKRAEERERRAATDALEAAKVNAN----- 429

Query: 452 MQLCSILEATS--DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
               ++ E  +   G+  ++  G ++  NR      G+  E+++ K F      N    +
Sbjct: 430 --FRTLFEQGTYFAGVMSLD--GTVVEANRIALVACGFKKEEVIGKKFWDCGWWNRSPAL 485

Query: 510 NHYLTEILSLDLRQ-TLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM----HDISEW 564
              + +            + +     +     + + I      S   + +     DI+E 
Sbjct: 486 MEMVRKASQQAAEGNIFRQESPYFVADGSQRFVDLSIAPAKDDSGQVVFLIPTGTDITER 545

Query: 565 KQEKNKLSHAKKIAEKESSHKSD 587
           K+ +  L  +++          +
Sbjct: 546 KRAEEALRESEERYRTLFESMDE 568



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 39/405 (9%), Positives = 107/405 (26%), Gaps = 17/405 (4%)

Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253
            A  +    +   + E+   H   E       +         M  +VS   +YY      
Sbjct: 33  PAARRIFTDQGLKVEELIGKHFWNEAFPETRGTLIEQEYRRSMTERVSGEFDYYLRAWQR 92

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
               +   + +   S+   +        +        + +  S    E +      ++  
Sbjct: 93  WFAIRVYPVEAGGISIYFHDITKRKLTEERATFLASLSKKLASVTEEEQIIRITVEAVGR 152

Query: 314 YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
           + +       E ++        ++         +   +    S+ D              
Sbjct: 153 HLNADRCYFVECLEHENRILIGHNWHR-----STSSSIEGAMSLFDFGGIDWWHQYSQGD 207

Query: 374 KLSDNNAIKPVMLYRSDR--TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP-- 429
              ++   +P+   ++    T    S  +   +   E ++ +            + +   
Sbjct: 208 FAVEDVETEPLTREKAANYVTVGVRSYAVQPCRREGEWTVVLGVTESFPRKWTADELSLM 267

Query: 430 --QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
                     V+     + +     +  +I+   + G+   + EG +   NR   ++ GY
Sbjct: 268 DDVIARVWPLVERARADQALRKSEARFRAIVSQATTGVVQADAEGQMTLVNRRWCEMLGY 327

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII-- 545
              ++L        E  +       +  +         +       K+         +  
Sbjct: 328 TEAELLTMNIAEVTEGESLRATLSAVHRLAEGGPS--FDMEKRYKRKDGSTFWASSSVNA 385

Query: 546 --KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
                         + DISE K+ + +   A   A + +   ++F
Sbjct: 386 VRGPAGEYQGLVAVVLDISERKRAEERERRAATDALEAAKVNANF 430



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 46/120 (38%), Gaps = 8/120 (6%)

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLF---GYPVEDILRKPFTVFLEQNTPSVMNHYL 513
           +LE+ +D   +++    +   N A  ++F   G  VE+++ K F       T   +    
Sbjct: 11  VLESIADSFLVVDGNWRLTYMNPAARRIFTDQGLKVEELIGKHFWNEAFPETRGTLIE-- 68

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH 573
            E       +   +        ++  ++R+       +   S+  HDI++ K  + + + 
Sbjct: 69  QEYRRSMTERVSGEFDYYLRAWQRWFAIRVYPV---EAGGISIYFHDITKRKLTEERATF 125


>gi|30265483|ref|NP_847860.1| sensory box histidine kinase YycG [Bacillus anthracis str. Ames]
 gi|47531051|ref|YP_022400.1| sensory box histidine kinase YycG [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49188302|ref|YP_031555.1| sensory box histidine kinase YycG [Bacillus anthracis str. Sterne]
 gi|65317446|ref|ZP_00390405.1| COG5002: Signal transduction histidine kinase [Bacillus anthracis
           str. A2012]
 gi|165872528|ref|ZP_02217161.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0488]
 gi|167641431|ref|ZP_02399681.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0193]
 gi|170689184|ref|ZP_02880381.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0465]
 gi|170708650|ref|ZP_02899089.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0389]
 gi|177651823|ref|ZP_02934406.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0174]
 gi|227818234|ref|YP_002818243.1| sensory box histidine kinase YycG [Bacillus anthracis str. CDC 684]
 gi|229602903|ref|YP_002869674.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0248]
 gi|254687094|ref|ZP_05150952.1| sensory box histidine kinase YycG [Bacillus anthracis str.
           CNEVA-9066]
 gi|254735140|ref|ZP_05192850.1| sensory box histidine kinase YycG [Bacillus anthracis str. Western
           North America USA6153]
 gi|254742151|ref|ZP_05199838.1| sensory box histidine kinase YycG [Bacillus anthracis str. Kruger
           B]
 gi|254755939|ref|ZP_05207971.1| sensory box histidine kinase YycG [Bacillus anthracis str. Vollum]
 gi|30260161|gb|AAP29346.1| sensory box histidine kinase YycG [Bacillus anthracis str. Ames]
 gi|47506199|gb|AAT34875.1| sensory box histidine kinase YycG [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49182229|gb|AAT57605.1| sensory box histidine kinase YycG [Bacillus anthracis str. Sterne]
 gi|164711751|gb|EDR17295.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0488]
 gi|167510606|gb|EDR86002.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0193]
 gi|170126432|gb|EDS95320.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0389]
 gi|170666827|gb|EDT17593.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0465]
 gi|172082527|gb|EDT67591.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0174]
 gi|227004751|gb|ACP14494.1| sensory box histidine kinase YycG [Bacillus anthracis str. CDC 684]
 gi|229267311|gb|ACQ48948.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0248]
          Length = 613

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 85/372 (22%), Positives = 159/372 (42%), Gaps = 25/372 (6%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +  +   E E  +L S+L   +DG+   +R+G I+  N    K+     E  L +     
Sbjct: 258 QQARSSTESERRKLSSVLSHMTDGVIATDRKGDIILLNDPAEKMLNVSRETALDQSVLEV 317

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
           L       ++H   E  S+ L  +                  +I K+   ++     ++D
Sbjct: 318 LGIQEEFTLDHLYEEPDSVLLDFSTRNEPYILRAS-----FSVIQKETGKANGLIAVLYD 372

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           ++                E+    + +F+A VSHE+RTPLT +  + E + +  +     
Sbjct: 373 VT--------------EQERIERERREFVANVSHELRTPLTTMRSYLEALTDGAWQDPNI 418

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
                +   I      ++ +VN LL +SK++S +  L  E V   +  +  I   +  + 
Sbjct: 419 APQ--FLTVIQEETERMIRLVNALLQLSKLDSTEHRLMKEWVDFTDFFNNIIDRFE-MSK 475

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV-IL 739
           E+ +  + SF+     I  D   + Q+  NI+SNA+ ++P GG +          E+  +
Sbjct: 476 EQNVSFKRSFSKKSRFIDMDTDKITQVLYNIISNALKYSPEGGTVT--YRLRDRGELLEI 533

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V D G+G+    ++K  + F ++  ++  +  GTGLGL +AK M++A+ G  +  S   
Sbjct: 534 SVSDQGMGIPKENVDKIFERFYRVDKARSRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEG 593

Query: 800 KGTLIEIIFPLY 811
           KGT I    P+ 
Sbjct: 594 KGTTIYFTLPMA 605


>gi|254413405|ref|ZP_05027176.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
 gi|196180025|gb|EDX75018.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
          Length = 689

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 95/425 (22%), Positives = 183/425 (43%), Gaps = 43/425 (10%)

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDT-----RINKRKMEIEVMQLCSILEATSDG 464
           ++ +            E       E +         +I + ++E     L +I+    DG
Sbjct: 35  AVKVYVREQFLKQAESEAKRLQKTEADTRQHVESINQILEGRVEERTAHLTAIINNLVDG 94

Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
           + + + +G I   N A  ++ G    DI  K     L       +   +T+  +      
Sbjct: 95  LLVTDTQGKISQFNPAFLRMLGLGELDITDKKGQDILNSE----LVELVTQTQNHHREVF 150

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSS-----CYSLTMHDISEWKQEKNKLSHAKKIAE 579
             +I L   +  K ++  I    L   +        + + DI+  K+             
Sbjct: 151 TAEIDLAGGRIGKAVATAIDKVALADGAVEEFLGSVILIRDITVEKEV------------ 198

Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP-------------RYIEY 626
                K+DF++ VSHE+RTPLT+++GF+++IK +    +                +  + 
Sbjct: 199 --DQMKTDFISTVSHELRTPLTSVLGFTKIIKKKLEDVIFPQVQTDNKKIQRTVRQVKDN 256

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
              I   G  +  ++ND+LDI+K+E+GK++ + +P+ + E +  AI+        K I  
Sbjct: 257 VTIIVSEGERLTALINDVLDIAKMEAGKVDWNMQPLLVHEIIERAIAATSSLFETKHIQF 316

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
                  +P I  D   + Q+ +N++SNA+ FT  G  I    T   + E+I+ V DTG+
Sbjct: 317 IKKVETELPEISGDKDRLIQVLINLISNAVKFTQKG-TITCRATQRHS-EIIISVIDTGM 374

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+   +  +  + F Q+ ++   + +GTGLGLP+ K +V+ + G+ ++ S   KG+    
Sbjct: 375 GIAPADQPQVFEKFKQVGDTLTDKPKGTGLGLPICKQIVEHHGGRIWVESEFKKGSTFSF 434

Query: 807 IFPLY 811
             P++
Sbjct: 435 TLPIH 439


>gi|323699563|ref|ZP_08111475.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. ND132]
 gi|323459495|gb|EGB15360.1| multi-sensor hybrid histidine kinase [Desulfovibrio desulfuricans
           ND132]
          Length = 813

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 102/543 (18%), Positives = 193/543 (35%), Gaps = 68/543 (12%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
           P+    +   +  +   +D      FV    G +  AN +   L   K    ++ +    
Sbjct: 7   PARPTSYVALDETSRALMDSSVESAFVMDVSGYVLAANDAAAKLFDLKPGQGLQRSNIYD 66

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
            L      S    I+  +            A     +    +   +       AN + E 
Sbjct: 67  LLPADAADSRRAKIEEAIRT--------VRAVRFEEEIGGRS---LVHSIVPVANPWGEV 115

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
                   +          +  E  +    +E+    +  +  +  I   NR   + FG 
Sbjct: 116 NRLAVHTLDLTKLHRTDEDLRREQQRQIFFMESLPGIVYHLYPDQTIRYANRYFRRYFGS 175

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
           P     R+         +       +    +             +  + +   L+     
Sbjct: 176 PRNRNCREALNCSGTSCSLCPPMEAMNTDRA--------VEWDWTDNQGRTFHLQCSPMT 227

Query: 548 LPFSSCYSLTM-HDISEWKQEKNKLSHAK------------------------------- 575
                   + +  DI+  ++ ++ L  A+                               
Sbjct: 228 DSNGERMIMVLGIDITARQRAEDALKMARDKLEDRVRQRTVELERANVELTSKSQRLVTA 287

Query: 576 -KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
            + A+  +  KS FLA +SHEIRTPL AI+G SE+            R   Y + +  +G
Sbjct: 288 MEKADAATRAKSSFLANMSHEIRTPLNAILGMSEL----ALSIPDKDRKDRYLHRVMEAG 343

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
           N +L ++ND+LD SKIE+ ++ L      L   +   + L  + A EK + +R   A ++
Sbjct: 344 NSLLSVINDILDFSKIEAARLTLENIDFDLRRTIEGTLDLHLIAAEEKGLELRAGVAEDV 403

Query: 695 PR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---------VILRVRDT 744
           P  ++ D   ++QI +N++ NAI FT +GG + +S    +  +         ++  V DT
Sbjct: 404 PPALVGDPSRLRQILINLIGNAIKFTETGG-VTVSVRPAAPADDLKPGDPITLVFAVTDT 462

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           GVG+  ++     + F Q  +S   +  GTGLGL + + +V+   G+  + S    G+  
Sbjct: 463 GVGIPEHKQRDIFQSFLQADDSITRKYGGTGLGLAICQLLVELMGGELTLESREGMGSTF 522

Query: 805 EII 807
              
Sbjct: 523 TFT 525


>gi|239994514|ref|ZP_04715038.1| aerobic respiration control sensor protein ArcB [Alteromonas
           macleodii ATCC 27126]
          Length = 784

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 103/405 (25%), Positives = 184/405 (45%), Gaps = 17/405 (4%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
             K  Q         +E E  D    + +       L SI++A+ D I   N EG     
Sbjct: 124 QRKQAQEEREALFKDLEKEIQDKSEQEAQARRLSTLLRSIIDASPDLIYYRNEEGRFAGC 183

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
           NR    + G   +++L        E+     +     E+L  +   T E     +    +
Sbjct: 184 NRIAELMTGKTEQELLGLTPKDVYEEELARQIVASDHEVLETNASITEELWLRFADGRRR 243

Query: 538 LLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
              ++ +       +         D++E KQ +N        A K S+ K+ F+A +SHE
Sbjct: 244 YFEMKRVPFFDKDGNRLGLLSFGRDMTERKQAEN-------AAAKASTDKTRFIATISHE 296

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           +RTPL  I+G S ++++       +     + + I  S   + +I ND++D+ K++  K+
Sbjct: 297 LRTPLNGIVGLSRMLRDTEL----SEEQFNWVSTIYASAITLGNIFNDIIDLDKLDRDKL 352

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSN 714
            L  + +SL +   E  S+++L A +K++ ++T+    +PR +  D   ++QI  NIL N
Sbjct: 353 ELSLKTISLKDFTEELSSIIRLLAADKQLELKTTINEPLPRLVEIDGTRLRQILWNILFN 412

Query: 715 AIHFTPSGGQ-IIISTTHTSNE--EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           A+ FT  G   + +S+T    +   V   + DTGVG+   E++K    + Q+ +      
Sbjct: 413 AVKFTQKGHVSLTVSSTKPDGDKAYVTFVIEDTGVGIPESEIDKIFAMYYQVDHPDHQSA 472

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
            GTG+GL + K MVD   G+ ++ S   KGT  EI+ P+  ++ P
Sbjct: 473 TGTGIGLAICKQMVDLMKGEIHVSSKVGKGTRFEIVLPVQISNSP 517



 Score = 46.9 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 12/104 (11%), Positives = 29/104 (27%), Gaps = 5/104 (4%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLW 150
            G     +       G    +++G+   DV +            ++L+   +   +  LW
Sbjct: 177 EGRFAGCNRIAELMTGKTEQELLGLTPKDVYEEELARQIVASDHEVLETNASITEE--LW 234

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR 194
                      ++  +P + ++    G   FG            
Sbjct: 235 LRFADGRRRYFEMKRVPFFDKDGNRLGLLSFG--RDMTERKQAE 276



 Score = 40.8 bits (94), Expect = 0.90,   Method: Composition-based stats.
 Identities = 21/219 (9%), Positives = 53/219 (24%), Gaps = 11/219 (5%)

Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302
           L +   +    LK     L +  E  +    +  +       + +     Q   +  F+ 
Sbjct: 79  LIKQLENSRTNLKEVVSQLESLREEDVFLNRELQSNIRQLNHEIEQRKQAQEEREALFKD 138

Query: 303 LS--HRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDD 359
           L    ++     A       L    +D  P   +     G     N    L+T     + 
Sbjct: 139 LEKEIQDKSEQEAQARRLSTLLRSIIDASPDLIYYRNEEGRFAGCNRIAELMTGKTEQEL 198

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
           +        L       +  A + V          A+      +++              
Sbjct: 199 LG-------LTPKDVYEEELARQIVASDHEVLETNASITEELWLRFADGRRRYFEMKRVP 251

Query: 420 KANQFPENMPQNGIEPEDVDTRINK-RKMEIEVMQLCSI 457
             ++    +       +  + +  +    +    +   I
Sbjct: 252 FFDKDGNRLGLLSFGRDMTERKQAENAAAKASTDKTRFI 290


>gi|62181836|ref|YP_218253.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|62129469|gb|AAX67172.1| aerobic respiration control sensor protein [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|322716325|gb|EFZ07896.1| aerobic respiration control sensor protein [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
          Length = 778

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 85/435 (19%), Positives = 177/435 (40%), Gaps = 17/435 (3%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L +          +L  +Q     +     I   +  +         ++ E
Sbjct: 81  EESRQRLSRLVQKLEEMRERDLKL-NVQLKDNIAQLNQEIVDREKAEAELQETFEQLKVE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             +    + ++E +   L S L+A+ D +   N +      NRA+  L G   + ++   
Sbjct: 140 IKEREEAQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCY 554
                       +     ++   ++  T E+        +    +R +    ++      
Sbjct: 200 PEDVYSPEAAEKVIETDEKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGL 259

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+        +   E+ S  K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 260 MGFGRDITERKR-------YQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTN 312

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     +Y   I  S   + +I ND++D+ K+E  K+ L  +PV     +++  +L
Sbjct: 313 LTA----EQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFMADLENL 368

Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
             L A +K +         +P  ++ D   ++QI  N++SNA+ FT  G Q+ +   +  
Sbjct: 369 SGLQAQQKGLRFVLEPTLPLPHKVITDGTRLRQILWNLISNAVKFTQQG-QVTVRARYDE 427

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMGKF 792
            + +   V D+G+G+   E +K    + Q+ +S   +   GTG+GL +++ +     G  
Sbjct: 428 GDMLHFEVEDSGIGIPQDEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDI 487

Query: 793 YIFSTPAKGTLIEII 807
            + S P KG+   + 
Sbjct: 488 TVSSLPGKGSTFTLT 502


>gi|205354229|ref|YP_002228030.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|207858576|ref|YP_002245227.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
 gi|205274010|emb|CAR39016.1| aerobic respiration control sensor protein [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|206710379|emb|CAR34737.1| aerobic respiration control sensor protein [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|326629351|gb|EGE35694.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 9]
          Length = 778

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 85/435 (19%), Positives = 177/435 (40%), Gaps = 17/435 (3%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L +          +L  +Q     +     I   +  +         ++ E
Sbjct: 81  EESRQRLSRLVQKLEEMRERDLKL-NVQLKDNIAQLNQEIADREKAEAELQETFEQLKVE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             +    + ++E +   L S L+A+ D +   N +      NRA+  L G   + ++   
Sbjct: 140 IKEREEAQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCY 554
                       +     ++   ++  T E+        +    +R +    ++      
Sbjct: 200 PEDVYSPEAAEKVIETDEKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGL 259

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+        +   E+ S  K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 260 MGFGRDITERKR-------YQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTD 312

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     +Y   I  S   + +I ND++D+ K+E  K+ L  +PV     +++  +L
Sbjct: 313 LTA----EQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFMADLENL 368

Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
             L A +K +         +P  ++ D   ++QI  N++SNA+ FT  G Q+ +   +  
Sbjct: 369 SGLQAQQKGLRFVLEPTLPLPHKVITDGTRLRQILWNLISNAVKFTQQG-QVTVRARYDE 427

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMGKF 792
            + +   V D+G+G+   E +K    + Q+ +S   +   GTG+GL +++ +     G  
Sbjct: 428 GDMLHFEVEDSGIGIPQDEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDI 487

Query: 793 YIFSTPAKGTLIEII 807
            + S P KG+   + 
Sbjct: 488 TVSSLPGKGSTFTLT 502


>gi|312113732|ref|YP_004011328.1| histidine kinase [Rhodomicrobium vannielii ATCC 17100]
 gi|311218861|gb|ADP70229.1| histidine kinase [Rhodomicrobium vannielii ATCC 17100]
          Length = 630

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 116/449 (25%), Positives = 200/449 (44%), Gaps = 46/449 (10%)

Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
             ++         TF    + +  P+  P        +D   + + +E     L  I+E+
Sbjct: 183 WPVRIKDAEKGWRTFQLRGEISSTPQGAPAFEGLLVPIDPSQSPQGLEGFPS-LPEIVES 241

Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVED-ILRKPFTVFLEQNTPSVMNHYLTEILSL 519
               IAI +RE  ++  NR   +L+       +    +     Q   ++          +
Sbjct: 242 LPISIAIWDRENRLVLCNRKFRQLYRVSAAAALPGTSYEAIQAQTQEAIAQRPPEGRGVV 301

Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK----------- 568
              Q  E+       +   L +    +             DI+  KQ +           
Sbjct: 302 GRFQLQERQL----GDGTWLQI---GEYWTGEGTLVSFGTDITMQKQTQHRVLEREQQMR 354

Query: 569 ------------------------NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
                                      +  K  AE  +  KS+FLA VSHE+RTPL AII
Sbjct: 355 ARVDGFEQSRRQLEIQARQLRELAESYNEEKIRAEAANQAKSEFLANVSHELRTPLNAII 414

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           GFSE++++   GP+GNP+Y  Y   I  SG  +L+++ND+LD+SKIE+G+  L  E  ++
Sbjct: 415 GFSEMMRDGVLGPIGNPKYESYVKDIHNSGRYLLEMINDILDMSKIEAGRWTLSPEWFTM 474

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724
            +   E +S+V   A E  + +  S   +I  +  D R++KQ+ +N+LSNA+ FTP  G+
Sbjct: 475 SDVFQECLSVVSPVAMEGNVELSQSGNTSI-SLYGDRRALKQVLINLLSNAVKFTPQDGK 533

Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
           + +   +     + + + DTGVG+  ++L +  +PF Q+ N      +GTGLGL +++++
Sbjct: 534 VSLR-AYRYRGSIRIAIADTGVGIPKHDLGRLGRPFEQVSNQLTKGHKGTGLGLAISRSL 592

Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
           V+ + GK  I S   +GT +  I P+ D 
Sbjct: 593 VEMHGGKLDIKSRVGEGTTVTCILPVQDE 621



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/278 (11%), Positives = 67/278 (24%), Gaps = 20/278 (7%)

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS---SL 243
            R  +   A    + +    +          +    D+                      
Sbjct: 96  RRCLDRAEAARLAIARHAQGVEAAGALGLRWDLVTGDLVWSGDAGGVFPTGESRPASFRD 155

Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE-SFEY 302
             ++ H DD L       L S +  +              T +             +FE 
Sbjct: 156 LRHWLHPDDFLYASISQALKSGQKRVNWPVRIKDAEKGWRTFQLRGEISSTPQGAPAFEG 215

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIE 361
           L     PS S    EG    PE V+  PI   ++     L   N  F  L +  +   + 
Sbjct: 216 LLVPIDPSQSPQGLEGFPSLPEIVESLPISIAIWDRENRLVLCNRKFRQLYRVSAAAALP 275

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                     + +       + +     +   +    +L   Q      L          
Sbjct: 276 G--------TSYEAIQAQTQEAIAQRPPEGRGVVGRFQLQERQLGDGTWL------QIGE 321

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459
               E    +    +    +  + ++     Q+ + ++
Sbjct: 322 YWTGEGTLVSFG-TDITMQKQTQHRVLEREQQMRARVD 358


>gi|15887386|ref|NP_353067.1| two component sensor kinase [Agrobacterium tumefaciens str. C58]
 gi|15154889|gb|AAK85852.1| two component sensor kinase [Agrobacterium tumefaciens str. C58]
          Length = 881

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 125/726 (17%), Positives = 260/726 (35%), Gaps = 36/726 (4%)

Query: 109 YAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALP- 167
              + +G    +             G  LK  +    + ++  +        + +     
Sbjct: 170 KRPEFLGQLPAETGVPQADQDFLAFGRWLKPASAGQLEKSIEKLRSHAQSFDLTIETQRG 229

Query: 168 -IYSRNREFSG---FRGFGIVHVNRVDNDPRALGK----RLDKKFSHLHEIKKGHSSVEK 219
            +       SG   F  F  ++  R +     + +         F  L +  +       
Sbjct: 230 EVIEVQGRVSGGNAFARFIALNNLRAELAELQVERERLLASVSTFQELLDSIEQPVWRRN 289

Query: 220 EKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTIN 279
            + ++        H           +      + +  +K     + ES  P  +   T+ 
Sbjct: 290 GEGELTWVNHAYAHAVDARNAEQAVQEKRELLNTVTRQKIRAAATPES--PYHDRISTVV 347

Query: 280 LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH- 338
               +       ++     +   +      ++            ET+D    P  ++   
Sbjct: 348 SGNRSFFDVV-DIKTAGGSAGIAIDATEAETIREELKRVLKSHAETLDHLATPVAIFDGR 406

Query: 339 GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398
             L + N +F  L  +  +  +E     S LLD  + +     +       +        
Sbjct: 407 QRLQFYNQAFASLWGF-DLVLLESGPDNSELLDRLRSAGKLPEQLNWKNWKE-------- 457

Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI- 457
              ++  + +    +  +P  +  +        G      +    +  +++    L  + 
Sbjct: 458 TALSVYRSLDTKTDLWHLPNGQTLRVIATAHPQGGATWVFENLTEQVDLQMRYNTLVKVQ 517

Query: 458 ---LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
              ++  ++G+A+   +G I  +N A   L+G   ++         +E       +    
Sbjct: 518 GETIDHLAEGVAVFGADGRIRLSNPAFRALWGVTADEAETGTHIRAIETACAQSYDGPDG 577

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLS---LRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571
                    + +          +LLS   L   I  LP +    LT  ++++  + +  L
Sbjct: 578 WRAFSQFITSFDDERPSRQGTLELLSGLVLDYAIIPLPDAQ-TMLTFVNMTDSVRAERAL 636

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
                   K    K+DF+  VS+E+R+PLT IIGF++++K    G L   R  EY ++I 
Sbjct: 637 KEKNDALLKADELKNDFVQHVSYELRSPLTNIIGFTDLLKTPGIGQLT-ERQAEYLDHIS 695

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
            S +++L IVND+LD++ +++G M L++    L+E + +    +     E  I +     
Sbjct: 696 TSSSVLLTIVNDILDLATVDAGIMQLNYSDNDLNELLDDVSVQIADRLQESGISLEIVAP 755

Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751
            ++  ++AD + +KQI + +L+NAI+F P G  + +S   +  + V   V D G G+   
Sbjct: 756 AHLGSLVADHQRLKQILIKLLTNAINFAPEGSSVQLSCQRSEGDFV-FSVADKGPGIPED 814

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
            L+     F    N  +    G GLGL + ++ V  + G   I S P  GT++    P  
Sbjct: 815 MLKSVFDRFATRGNGGRRT--GAGLGLSIVESFVSLHHGTVSIDSRPGNGTIVTCRIP-- 870

Query: 812 DTSHPH 817
             + PH
Sbjct: 871 SATLPH 876



 Score = 48.5 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/398 (7%), Positives = 89/398 (22%), Gaps = 18/398 (4%)

Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS 242
            V      +   A   R  ++F    + K   +                     + ++  
Sbjct: 12  TVQRVENTHASVASSTRALERFCVFPDGKPAPTFSGNALARCRLAIRAIRTGFSRARILL 71

Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302
                     V   +   +  +        E               F  +    +     
Sbjct: 72  SGTVLTGSSTVAMAQDGLVAKTSARLFSSGETITYSLFVGMLSATLFSVVWLVRQRGNIE 131

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEI 362
                +    A            +        ++        +     L +  +   +  
Sbjct: 132 AESSEYRQALAQSHHKIAKYEALISDKSRRIVIWDG-----VDKRPEFLGQLPAETGVPQ 186

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
           A              +       + +      +    + T +      +          N
Sbjct: 187 ADQDFLAFGRWLKPASAGQLEKSIEKLRSHAQSFDLTIETQR----GEVIEVQGRVSGGN 242

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
            F   +  N +  E  + ++ + ++   V     +L++    +   N EG +   N A +
Sbjct: 243 AFARFIALNNLRAELAELQVERERLLASVSTFQELLDSIEQPVWRRNGEGELTWVNHAYA 302

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
                   +   +     L   T   +        +       ++I+   +       + 
Sbjct: 303 HAVDARNAEQAVQEKRELLNTVTRQKIRAA-----ATPESPYHDRISTVVSGNRSFFDV- 356

Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
                +  +   +    D +E +  + +L    K   +
Sbjct: 357 ---VDIKTAGGSAGIAIDATEAETIREELKRVLKSHAE 391



 Score = 47.3 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 38/382 (9%), Positives = 98/382 (25%), Gaps = 36/382 (9%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            W  +  G L  ++      +     +     + +  ++L+      I      ++ ++ 
Sbjct: 285 VWRRNGEGELTWVNHAYAHAVDARNAE---QAVQEKRELLNTVTRQKIRAAATPESPYHD 341

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           + +       + +  +D+             G  G  I          R   KR+ K  +
Sbjct: 342 RISTVVSGNRSFFDVVDIKTA---------GGSAGIAI--DATEAETIREELKRVLKSHA 390

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS---SLTEYYAHKDDVLKTEKYPLL 262
              +      ++   +  +         L   + V                   +    L
Sbjct: 391 ETLDHLATPVAIFDGRQRLQFYNQAFASLWGFDLVLLESGPDNSELLDRLRSAGKLPEQL 450

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN-------SKESFEYLSHRNHPSLSAYF 315
             +         + +++          G               ++ + +      L   +
Sbjct: 451 NWKNWKETALSVYRSLDTKTDLWHLPNGQTLRVIATAHPQGGATWVFENLTEQVDLQMRY 510

Query: 316 DEGENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIAG--GLSTLLDA 372
           +    +  ET+D       V+ + G +  +NP+F  L    + +         + T    
Sbjct: 511 NTLVKVQGETIDHLAEGVAVFGADGRIRLSNPAFRALWGVTADEAETGTHIRAIETACAQ 570

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
                +          S        +R  T++      L    IP   A      +    
Sbjct: 571 SYDGPDGWRAFSQFITSFDDERP--SRQGTLELLSGLVLDYAIIPLPDAQTMLTFVNM-- 626

Query: 433 IEPEDVDTRINKRKMEIEVMQL 454
                 D+   +R ++ +   L
Sbjct: 627 -----TDSVRAERALKEKNDAL 643


>gi|167746930|ref|ZP_02419057.1| hypothetical protein ANACAC_01642 [Anaerostipes caccae DSM 14662]
 gi|167653890|gb|EDR98019.1| hypothetical protein ANACAC_01642 [Anaerostipes caccae DSM 14662]
          Length = 812

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 87/394 (22%), Positives = 173/394 (43%), Gaps = 21/394 (5%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREG--IILSTNRAVSKLFGYPVEDILR--KPFTV 499
           + K+E    +  +I+     G A ++ E    ++       ++ GY  E      +    
Sbjct: 149 EYKLEKRDREREAIIRTIPGGFARVDAEDLRTVIWYGGGFLQMIGYTEEQFENELQSKCD 208

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYS 555
           ++  +        + +          E   +    + K+L++         S      + 
Sbjct: 209 YVHPDDIERTVEIMEKSRETGEDTAAEGRIVTRDGKIKILTMTFSYVSAKDSWDGKDSFY 268

Query: 556 LTMHDIS----EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
               DI+    E +++K  L  A + A   ++ K++FL+ +SH+IRTP+ AI+G + + +
Sbjct: 269 SIGIDITKEREEQERQKTALQDAYQAARVANAAKTNFLSSMSHDIRTPMNAIMGMAAIAQ 328

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
                P    +  +  N I+ S   +L ++N++LD+SKIESGK+N+  E +SL + +   
Sbjct: 329 ANLECP---DKIQDCLNKINTSSRHLLSLINEVLDMSKIESGKINISLEQISLPDMIGAV 385

Query: 672 ISLVQLYANEKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
           + +     N K    + S  + N   ++AD   ++Q+ +N++SNA+ +TP GG I +   
Sbjct: 386 MDMCLPLINGKHQQFQMSIGHVNHEHVIADGDRLRQVLMNLISNAVKYTPEGGTITLRIN 445

Query: 731 HT-----SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
                     +      DTG+G++   L    +PF +  +S+  + +GTGLG+ + + +V
Sbjct: 446 EQYSPNPKKSQYEFICIDTGIGISEEFLPHIFEPFSRAEDSRISKIQGTGLGMAITENIV 505

Query: 786 DANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819
               G   + S    G+   +  PL        C
Sbjct: 506 RMMNGTISVESKIGTGSKFTVSVPLEICGEEEVC 539


>gi|163793573|ref|ZP_02187548.1| Signal transduction histidine kinase [alpha proteobacterium BAL199]
 gi|159181375|gb|EDP65890.1| Signal transduction histidine kinase [alpha proteobacterium BAL199]
          Length = 950

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 123/684 (17%), Positives = 230/684 (33%), Gaps = 31/684 (4%)

Query: 148 TLWPIEGTNLYVPIDLAALPIYSR------NREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
            LW     +  +P+  A   +             +   G     +          G    
Sbjct: 282 RLWIDTRHSQRIPVIAAHRLLGGDVANTELQGRIA-VVGVSAAGIGLSVKTASGAGVASA 340

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
              +   +    H  + +  + +  + +    + +   + +           L      L
Sbjct: 341 VFQALAIDSILDHRVMARPAFLMVLELAAAVVIGLTLILGAP----WFGLTSLGMVAAGL 396

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
             +  S+           ++          L  +      +         SA   + +  
Sbjct: 397 GVTMPSAAGLVAFGAITLVDFSFPLLVGLVLAGHLAVVRVHEQSVLRRRQSALLAQQDAY 456

Query: 322 TPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
             + VD        V     +  AN     L K    + +  +     L+     +    
Sbjct: 457 MRQVVDASFDAIITVDREARILTANAGAERLFKV-PAEQLRDSRVEEWLIGFWARAVREE 515

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
            +  +        I A+A         + S     I    A      +    +  +    
Sbjct: 516 PERALRDSVRGHQIIAAAT-------DQGSGVQVPIELTVAETAASGLTFVIVLRDISAR 568

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
              +      V +L   +E  +DG A+   +  ++  N     + G              
Sbjct: 569 IGAEAAARQAVERLRDAVERITDGFALFGPDRRLVICNARFVDMLGEAGSTARPGGRYDV 628

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK--------EEKLLSLRIIIKKLPFSS 552
           + +         ++ +             L  T         + +   +           
Sbjct: 629 IMECYAETSRAPVSAVGRGRDWVAERTAALAETSEPAVRECLDGRWFRIDERPT---AEG 685

Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
                  DI+E K  + +++ A   AE  SS KS+FLA +SHE+RTPL A+IGF++++K 
Sbjct: 686 GLVCVYTDITELKHREMEITQAMISAESASSAKSEFLANMSHELRTPLNAVIGFADLMKQ 745

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
           + FGPLG+  Y EY   I  SG+ +L ++  +LD S+ E    +      +L++ V   +
Sbjct: 746 ELFGPLGHDHYREYVEDIIGSGSKLLSMIEVILDFSRSEQVGQSDSDARCALNDVVGAVV 805

Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
             +   A +K I +       +P +  D   + QI  N+LSNAI F+  G  I + T   
Sbjct: 806 RDLSPIALQKNIDVSVDRDETLPPLNVDGAILYQILQNLLSNAIKFSNPGAPIGLRTFRA 865

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
           ++    + V D GVG+ +  ++K  +PF Q         +G GLGL + K+  DA  G+ 
Sbjct: 866 ADGSAGMSVTDHGVGIPDELIDKVTQPFWQRQGPLVRDHDGVGLGLAIVKSHTDALGGEL 925

Query: 793 YIFSTPAKGTLIEIIFPLYDTSHP 816
              S   +GT + I+ P   T  P
Sbjct: 926 KFDSQVGRGTTVTILLPASRTIRP 949



 Score = 40.4 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/216 (8%), Positives = 55/216 (25%), Gaps = 20/216 (9%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D    +   +    +     A ++   R+ +              +    +++  G   
Sbjct: 471 VDREARILTANAGAERLFKVPAEQLRDSRVEEWLIGFWARAVREEPE-RALRDSVRGHQI 529

Query: 149 LWPI--EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
           +     +G+ + VPI+L            SG     ++          A  ++  ++   
Sbjct: 530 IAAATDQGSGVQVPIELTVA-----ETAASGLTFVIVLRDISARIGAEAAARQAVERLRD 584

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
             E      ++              P  R+    +   +         +      +  E 
Sbjct: 585 AVERITDGFALFG------------PDRRLVICNARFVDMLGEAGSTARPGGRYDVIMEC 632

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302
            +   +     +   +    +    L   S+ +   
Sbjct: 633 YAETSRAPVSAVGRGRDWVAERTAALAETSEPAVRE 668


>gi|317478874|ref|ZP_07938024.1| hsp90-like protein [Bacteroides sp. 4_1_36]
 gi|316904956|gb|EFV26760.1| hsp90-like protein [Bacteroides sp. 4_1_36]
          Length = 914

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 109/487 (22%), Positives = 182/487 (37%), Gaps = 28/487 (5%)

Query: 335 VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394
            +  G L + N  F       +  DI                D  + K            
Sbjct: 283 AHEDGTLIFCNRCFKERHGIGNGQDITRMKIYD---LPSYGRDETSWKEFANRVKRGETN 339

Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
                 H +    E         +  +++    +   G   +      ++++++     L
Sbjct: 340 HGYIVYHPLPKRPEVLAIEGNAYWVTSDKGEGTIWTFG--RDVSTRIRHEQQIKQFNQIL 397

Query: 455 CSILEATSDGIAIINREGII--LSTNR-AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
             I+E    GI + +       L  NR + ++    P+++ L K    F    T      
Sbjct: 398 DKIIENLPAGIVVKDINNNFKYLYRNRESYNR--EIPIQEALGKDDFDFYPLETAQEKRA 455

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLR---IIIKKLPFSSCYSLTMHDISEWKQEK 568
              EI                      + L    + I+   FS        DI+E +Q K
Sbjct: 456 QDIEIARTGKEMHWIAEE--RDGNGNPIYLDKRKMKIESNDFSPILLNIEWDITEMEQMK 513

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
            +L  AK+ AE     KS FLA +SHEIRTPL AI+GFS +I             + Y  
Sbjct: 514 RELLVAKEKAETSDRLKSAFLANMSHEIRTPLNAIVGFSRIIAE----STNEEERLGYYE 569

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            ++ +   +L ++N++LD+SKIESG +     PV L     E           K + +  
Sbjct: 570 IVESNNERLLQLINEILDLSKIESGIVEFTITPVRLHPLCKEIHDAHIFRCP-KGVELIY 628

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-EVILRVRDTGVG 747
             ++    I  D   + Q+  N++ NA  FT +G    IS  +      V   V DTG+G
Sbjct: 629 EPSDENIVIDGDKNRIFQVISNLIGNAFKFTTAG---HISYGYHQEGKYVAFHVTDTGMG 685

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           +   ++++  + F ++ N      +GTGLGL + K +++   G   + S   KGT    +
Sbjct: 686 IAPDKVDRVFERFVKVNNF----AQGTGLGLSICKTIIERLGGNISVTSEVGKGTTFTFV 741

Query: 808 FPLYDTS 814
            PL   S
Sbjct: 742 LPLEAAS 748



 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 48/167 (28%), Gaps = 19/167 (11%)

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI-----ILST 477
           Q        G E   V  +   ++ E     L    +       ++NR+GI     + + 
Sbjct: 2   QAAHGRRPEGHETNTVRMKNILKQAESAERLLKLTSDTM----LLLNRDGICMDIAVHNV 57

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
           N     L+    E +L K     +  +T   +     ++L+  +R               
Sbjct: 58  N-----LWFMKEEKLLGKNLFQLIPPSTYYQVYPEFKKVLTQKVRSVHNYEMTL-----G 107

Query: 538 LLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
             +        P+         DI+E  Q K +L        +    
Sbjct: 108 HTTYYFKCIMYPYDGMVLCQYRDITERSQRKLELEKKNHELNEIQKA 154



 Score = 44.6 bits (104), Expect = 0.063,   Method: Composition-based stats.
 Identities = 28/284 (9%), Positives = 75/284 (26%), Gaps = 15/284 (5%)

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDI 360
           +Y             ++  +   E      I  + Y      +    +   T     +++
Sbjct: 127 QYRDITERSQRKLELEKKNHELNEIQKAALIGNWQYDTQTRIFC---YAGHTGIMCSEEV 183

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
           +     + L         +    +      +   +   R+        N   +    F +
Sbjct: 184 QHINMDNYLELILPEDRKSFTGWMKENLKGKMENSVDYRIFLK----GNIFYIRLKAFAR 239

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
             Q   N+   G      D +  +  +      L   +  +++ I   + +G ++  NR 
Sbjct: 240 ERQKDGNVTIEGYIQNITDIQKRRNDI----NLLTHAINNSTEDIYSAHEDGTLIFCNRC 295

Query: 481 VSKLFGY-PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
             +  G    +DI R                      +          +     K  ++L
Sbjct: 296 FKERHGIGNGQDITRMKIYDLPSYGRDETSWKEFANRVKRGETNHGYIVYHPLPKRPEVL 355

Query: 540 SLRIIIKKLPFSSC---YSLTMHDISEWKQEKNKLSHAKKIAEK 580
           ++      +              D+S   + + ++    +I +K
Sbjct: 356 AIEGNAYWVTSDKGEGTIWTFGRDVSTRIRHEQQIKQFNQILDK 399


>gi|205375564|ref|ZP_03228352.1| two-component sensor histidine kinase [Bacillus coahuilensis m4-4]
          Length = 606

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 80/396 (20%), Positives = 167/396 (42%), Gaps = 28/396 (7%)

Query: 426 ENMPQNGIEPEDVDTRINKRKM--EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           + + +  +   ++  R+ + +   E E  +L S+L   +DG+   +R+G ++  N   +K
Sbjct: 234 DEIGELAMNFNNLTKRLQEAQATTEGERRKLSSVLSYMTDGVIATDRKGKVILINDPAAK 293

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
                 + +L       L        +  L E  S+ L  + +                +
Sbjct: 294 QLKVERDQVLSNSIVTLLGLEDEYTFDELLNEQESVILDYSSKDQPYILRAN-----FSV 348

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
           I K+    +     +HDI+E ++                  + +F+A VSHE+RTPLT +
Sbjct: 349 IQKETGHVNGLITVLHDITEQEKIDMD--------------RREFVANVSHELRTPLTTM 394

Query: 604 IGFSEVIKNQRFGPLGNPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
             + E +     G + +P    ++          ++ +VNDLL +SK++S     + E +
Sbjct: 395 RSYLEALAE---GAMDDPTIAPQFLKVTQDETERMIRLVNDLLQLSKMDSRDYYFNKEWI 451

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
                    I   +  +  + +  +    +    +  D   + Q+  NI+SNA+ ++P G
Sbjct: 452 PFIRFFDGIIDRFE-MSKAQHVTFKRELPDEQILVEIDPDKLTQVIDNIISNALKYSPDG 510

Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
           G +           +++ ++D G+G+    L+K  + F ++  ++  +  GTGLGL +AK
Sbjct: 511 GTVTFGVDIQEE-FIVISIKDQGMGIPKDNLDKIFERFYRVDKARSRQMGGTGLGLAIAK 569

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
            M+  + G  +  S   +GT I    P Y+++   +
Sbjct: 570 EMIYTHGGDIWADSKEGEGTTIFFTLP-YESTQEDE 604


>gi|120610910|ref|YP_970588.1| PAS/PAC sensor signal transduction histidine kinase [Acidovorax
           citrulli AAC00-1]
 gi|120589374|gb|ABM32814.1| PAS/PAC sensor signal transduction histidine kinase [Acidovorax
           citrulli AAC00-1]
          Length = 839

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 112/617 (18%), Positives = 210/617 (34%), Gaps = 29/617 (4%)

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP----PHLRMKNKVSSLTEYYAHKDDVL 254
           RL      L +      +       +   Q       P ++  +++ +     +    ++
Sbjct: 234 RLLASSVPLPDPDTPDIASLPVFTRLLPLQEHGSYVGPGVQGPDRILAYRASRSKP--LV 291

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
              + P   +    L +   F  + L           +   S  +          +    
Sbjct: 292 VIVEEPWHEAFMRWLRDSCPFLAMELGLVALVLALTWIAWRSLRARAAARAAVDAAQERI 351

Query: 315 FDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
                +L         + F     G   Y N  +  L        I              
Sbjct: 352 ARSERDLALLLRSVQELIFRTDRDGVFTYVNARWNALWGEPPASAIGRRL--------QD 403

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
           L    + + V      R+  A   R   ++        +              +   G  
Sbjct: 404 LVAPESQERVAAMLDPRSPSALRTRQLRVRSPLGGERVLDVAAVPLRAADGHVIAFAGSA 463

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
            +  +     +++  +V     +LE +   + + +    ++  NR+  +  G P E I+ 
Sbjct: 464 VDVTERERGDQRLRAQVAFQNLLLETSPQPMMLTDLAHRVVLVNRSWEQAMGCPREHIVG 523

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-- 552
           +                     LS     TLE+         +   +             
Sbjct: 524 ER-------RALYPGEEADNAALSAGGGTTLERDLPYGDGTRRATRVLKAAVHGDRGDVT 576

Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
                + DISE+++ +     A   AE+ +  ++ F+A +SHE+RTPL AIIGF+E+   
Sbjct: 577 GVLSILVDISEFREAERATREAYDAAEEAARTRTQFVANMSHELRTPLQAIIGFAEL--- 633

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
                  + R       I  +G  +L +VNDLLD++KIES    +H E   L   +    
Sbjct: 634 -GSARSQDERLGAMFTDILAAGQRMLALVNDLLDVAKIESDIGTIHLERTDLRGHIRTVA 692

Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
             +      +R  +R     +     AD R  +Q+  N+L+NAI F+P G  I +     
Sbjct: 693 RELGPLVASRRQDLRIDLPQHPLVARADPRRFQQVVRNVLANAIKFSPDGSCIQLRAGMD 752

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
           + + + + V+D G G+   ELE+    F Q   ++     GTGLGL + + +V+A  G+ 
Sbjct: 753 AEDTICIEVQDQGPGIPPAELERIFDAFAQSSRTRNRS-GGTGLGLAICRKIVEALEGRI 811

Query: 793 YIFSTPAKGTLIEIIFP 809
           +  +    G +  I  P
Sbjct: 812 HARNVEG-GAVFRIELP 827



 Score = 78.1 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 41/388 (10%), Positives = 94/388 (24%), Gaps = 21/388 (5%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144
             +  D  G    ++       G      IG RL D+      +    +  +L  ++   
Sbjct: 368 LIFRTDRDGVFTYVNARWNALWGEPPASAIGRRLQDLVAP---ESQERVAAMLDPRSPSA 424

Query: 145 GKTTLWPIEGTNLYVPI-DLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
            +T    +        + D+AA+P+ + +     F G  +              +     
Sbjct: 425 LRTRQLRVRSPLGGERVLDVAAVPLRAADGHVIAFAGSAV--DVTERERGDQRLRAQVAF 482

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR---MKNKVSSLTEYYAHKDDVLKTEKYP 260
            + L E       +    + +               ++ V      Y  ++         
Sbjct: 483 QNLLLETSPQPMMLTDLAHRVVLVNRSWEQAMGCPREHIVGERRALYPGEEADNAALSAG 542

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
             T+ E  LP  +                             +S       +        
Sbjct: 543 GGTTLERDLPYGDGTRRATRVLKAAVHGDRGDVTGVLSILVDISEFREAERATREAYDAA 602

Query: 321 LTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
                     +    +       A   F  L   +S D+   A     L           
Sbjct: 603 EEAARTRTQFVANMSHELRTPLQAIIGFAELGSARSQDERLGAMFTDIL--------AAG 654

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWN----RENSLAMTFIPFEKANQFPENMPQNGIEPE 436
            + + L           + + TI       R +   +            +++  +  +  
Sbjct: 655 QRMLALVNDLLDVAKIESDIGTIHLERTDLRGHIRTVARELGPLVASRRQDLRIDLPQHP 714

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDG 464
            V     +R  ++    L + ++ + DG
Sbjct: 715 LVARADPRRFQQVVRNVLANAIKFSPDG 742


>gi|302874728|ref|YP_003843361.1| multi-sensor signal transduction histidine kinase [Clostridium
           cellulovorans 743B]
 gi|307690658|ref|ZP_07633104.1| multi-sensor signal transduction histidine kinase [Clostridium
           cellulovorans 743B]
 gi|302577585|gb|ADL51597.1| multi-sensor signal transduction histidine kinase [Clostridium
           cellulovorans 743B]
          Length = 568

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 80/387 (20%), Positives = 168/387 (43%), Gaps = 33/387 (8%)

Query: 426 ENMPQNGIEPEDVDTRINKR--KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           + +   G     + +++     K+  E   L +ILE+   G+  I+ E  ++ TN  V K
Sbjct: 210 DEVGDLGRVFNIMTSKMEAAINKLTEEQNTLQAILESMESGVIAIDDEDRVILTNLYVEK 269

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +FG     +L +     +       +      +                  + + L ++ 
Sbjct: 270 IFGIKTN-VLGEKIINLVRDIEIEKIIKANNNVPK---------EIEIRHPQPRSLRIKT 319

Query: 544 IIKKLPFSS-CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
              +  +        + DI++ K+ +              + +  F+A VSHE++TPLT+
Sbjct: 320 AYIRKGYEIIGRVAVVQDITDIKKLE--------------NLRYQFMANVSHELKTPLTS 365

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           I GF+E ++        + +  ++ N I+   N +  ++ND+L +S IE+ K  L +E +
Sbjct: 366 IKGFAETLR----YVKEDDKKEKFLNIINEEANRLTSLINDILTLSDIETHKDKL-YEDI 420

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
            ++  + +   L++  A+EK I +    ++    +  +    KQ+ +N++ NAI ++   
Sbjct: 421 EVNAIIKDVFLLLKPIADEKEIQLTYDISDTTVIVSGEQNKFKQMLINLIDNAIKYSDRN 480

Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
           G + +      +  V++ V D G+G+ N  L +  + F ++  ++     GTGLGL + K
Sbjct: 481 GFVKVQCFLKED-YVVITVEDNGIGIENICLNRIFERFYRVDEARSRARGGTGLGLAIVK 539

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFP 809
            ++    G   + S   KGT   +  P
Sbjct: 540 HIILEFKGTIDVESEIGKGTKFIVKVP 566


>gi|254507496|ref|ZP_05119630.1| PAS fold family protein [Vibrio parahaemolyticus 16]
 gi|219549566|gb|EED26557.1| PAS fold family protein [Vibrio parahaemolyticus 16]
          Length = 787

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 87/401 (21%), Positives = 168/401 (41%), Gaps = 19/401 (4%)

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
               +         +E E       + ++      L S ++A+ D I   N +G+    N
Sbjct: 122 RIKAEEAREEAMKDLENEVYQRERTQLELAERTALLRSFIDASPDLIYYRNADGVFSGCN 181

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
           RA+ +L G     ++         +     +     ++ S +   T E+        +  
Sbjct: 182 RAMEELTGKKESQLVGLTPWDVYSKEVAQQIVDTDQKVFSDNQALTYEQWLEYPDGHKNY 241

Query: 539 LSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
             LR +                 DI+E K+ +  L       EK S  K+ F++ +SHE+
Sbjct: 242 FELRKVPFYSKDGRHLGLVGFGRDITERKRHEESL-------EKASRDKTTFISTISHEL 294

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTPL  I+G S ++ + +           +   I+ S   + +I ND++D+ K +  K+ 
Sbjct: 295 RTPLNGIVGLSRMLLDTQL----TEEQRHHMQTINVSAITLGNIFNDIIDMDKFDRRKLE 350

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNA 715
           L+   ++ +  V+E  S+  L A +K +       +++P  I  D   ++Q+  N++SNA
Sbjct: 351 LYPSALNFENFVAEIESISALMATQKGLRFDLERLSSLPSEIEVDATRLRQVLWNLISNA 410

Query: 716 IHFTPSGGQI-IISTTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGE 772
           + FT  GG +  +S         + + V D+G+G+   ELEK    + Q+ + +      
Sbjct: 411 MKFTKEGGVVMTVSAEMEDAFATITMEVEDSGIGIPEAELEKIFAMYYQVKSGKDNLHAV 470

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF--PLY 811
           GTG+GL ++K +++   G   + S    G+   +    PL 
Sbjct: 471 GTGIGLAVSKQLINMMDGDITVTSEEGFGSTFTVTIRVPLA 511



 Score = 48.5 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/129 (13%), Positives = 37/129 (28%), Gaps = 5/129 (3%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTT 148
           +A G     +  + +  G    +++G+   DV          +    +         +  
Sbjct: 172 NADGVFSGCNRAMEELTGKKESQLVGLTPWDVYSKEVAQQIVDTDQKVFSDNQALTYEQW 231

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           L   +G   Y   +L  +P YS++    G  GFG               ++  +  +   
Sbjct: 232 LEYPDGHKNYF--ELRKVPFYSKDGRHLGLVGFG--RDITERKRHEESLEKASRDKTTFI 287

Query: 209 EIKKGHSSV 217
                    
Sbjct: 288 STISHELRT 296


>gi|15837455|ref|NP_298143.1| two-component system, sensor protein [Xylella fastidiosa 9a5c]
 gi|9105761|gb|AAF83663.1|AE003925_3 two-component system, sensor protein [Xylella fastidiosa 9a5c]
          Length = 499

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 94/485 (19%), Positives = 182/485 (37%), Gaps = 39/485 (8%)

Query: 338 HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397
            G     N SF    +  SV          +L D         IK           +   
Sbjct: 12  DGIFRLTNASFGRHLRLGSV-------VGESLCDIMPDDGPQWIKRYGGVALSGQRVHFE 64

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
           AR          +L   +         PE      +  +  + +  +R++    ++   +
Sbjct: 65  AR----------ALCRWYSVEVMRVGAPEGRLLGVLFMDVTERKRMERRLAESEVRFNIL 114

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
            +     + + + +G +   N A  + FG  +       +++ L      +    L+  L
Sbjct: 115 ADGLPMPVWVFDAQGGMRFVNTAYGEFFGVDLSSGTVPEWSMVLHPEDVLIFEFKLSAAL 174

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH----DISEWKQEKNKLSH 573
               +     +      + +   + +          + + +     D++E  + +     
Sbjct: 175 KT--QSAFRALVRARRYDGQWRWIEMSATPRYSPDGHFIGLTGSSPDVTERLEIELAREQ 232

Query: 574 -------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
                  A+  AE  +  K +FL+ +SHE+RTPLT I+G+SE++  +      + ++  Y
Sbjct: 233 LLKSERAARNEAENMARLKDEFLSTLSHELRTPLTTILGWSELLLQRI-----DEQHPCY 287

Query: 627 --ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
              + I  S  +   +++D+LD+S +  GKM L  E + L E + E I L +   + K  
Sbjct: 288 KGLSVIASSAKVQKRLISDMLDLSSMLLGKMQLKMEVLDLVEQIREVIGLYEPVVDSKGQ 347

Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744
            +    +     +L D   ++QI  N+LSNAI FTP+ G I +       +   + V D+
Sbjct: 348 RLLLRASEMPCLVLGDATRLRQIFENLLSNAIKFTPTDGCIDVEID-ADGDSFRVSVTDS 406

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTL 803
           G G+    L      F Q   +      G GLGL + +++V+ + G     S    KG +
Sbjct: 407 GDGIAAEFLPHLFSRFRQADGTTTRCHGGLGLGLAIVQSLVEMHGGYVGATSPGIGKGAM 466

Query: 804 IEIIF 808
             +  
Sbjct: 467 FTVSL 471



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/201 (13%), Positives = 58/201 (28%), Gaps = 9/201 (4%)

Query: 54  FTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM 113
           F D  +         +SE  F        +   W  DA G ++ ++    +  G      
Sbjct: 91  FMDVTERKRMERRLAESEVRFNILADGLPMP-VWVFDAQGGMRFVNTAYGEFFGVDLSSG 149

Query: 114 IGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172
                  V     +      +   LK Q+ +         +G   +  I+++A P YS +
Sbjct: 150 TVPEWSMVLHPEDVLIFEFKLSAALKTQSAFRALVRARRYDG--QWRWIEMSATPRYSPD 207

Query: 173 REFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP 232
             F G  G      +    +   +    ++        +    ++ + K +  S  S   
Sbjct: 208 GHFIGLTG-----SSPDVTERLEIELAREQLLKSERAARNEAENMARLKDEFLSTLSHEL 262

Query: 233 HLRMKNKVSSLTEYYAHKDDV 253
              +   +          D+ 
Sbjct: 263 RTPLTTILGWSELLLQRIDEQ 283



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/346 (8%), Positives = 98/346 (28%), Gaps = 25/346 (7%)

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL--SHRNHPSLSAYFDEGENLT 322
              +L  Q                   +          L         +     E E   
Sbjct: 52  GGVALSGQRVHFEARALCRWYSVEVMRVGAPEGRLLGVLFMDVTERKRMERRLAESEVRF 111

Query: 323 PETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
               D  P+P +V+   G + + N ++             ++ G           ++  I
Sbjct: 112 NILADGLPMPVWVFDAQGGMRFVNTAYGEFFGVD------LSSGTVPEWSMVLHPEDVLI 165

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT- 440
               L  + +T  A  A +   +++      +      + +     +   G  P+  +  
Sbjct: 166 FEFKLSAALKTQSAFRALVRARRYDG-QWRWIEMSATPRYSPDGHFIGLTGSSPDVTERL 224

Query: 441 --RINKRKMEIEVMQLCSILEATS----DGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
              + + ++        +  E  +    + ++ ++ E         ++ + G+   ++L 
Sbjct: 225 EIELAREQLLKSERAARNEAENMARLKDEFLSTLSHELR-----TPLTTILGWS--ELLL 277

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554
           +             +     ++    +   L+  ++   K +  + +  +++++      
Sbjct: 278 QRIDEQHPCYKGLSVIASSAKVQKRLISDMLDLSSMLLGKMQLKMEVLDLVEQIREVIGL 337

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR-TP 599
              + D    +           +    +  +  F   +S+ I+ TP
Sbjct: 338 YEPVVDSKGQRLLLRASEMPCLVLGDATRLRQIFENLLSNAIKFTP 383


>gi|325104428|ref|YP_004274082.1| PAS/PAC sensor hybrid histidine kinase [Pedobacter saltans DSM
           12145]
 gi|324973276|gb|ADY52260.1| PAS/PAC sensor hybrid histidine kinase [Pedobacter saltans DSM
           12145]
          Length = 641

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 98/379 (25%), Positives = 177/379 (46%), Gaps = 21/379 (5%)

Query: 441 RINKRKME-----IEVMQLCSILEATSDGIAIINREGI-ILSTNRAVSKLFGYPVEDILR 494
           R+ K ++E       + +   I+  + D I +++     I   N ++ K+ G+  ED+L 
Sbjct: 123 RLAKAQLEIKHKNAALERYAVIIANSVDIICVVDERTKLIEELNPSIEKILGFKKEDVLE 182

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554
           +P    + +N        L ++   +  +T E   L +  E      R+   K      Y
Sbjct: 183 RPIYSLVPKNRLEDFREELLKL-DHEKERTFEFQLLNNKGELVWTECRVTFSKKK----Y 237

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
             ++ + +  KQ + +L H+K+ A +  + K  FLA +SHE+RTPL  IIG + ++K   
Sbjct: 238 FFSISNHTLQKQYEEQLIHSKEDAIQARNVKETFLANMSHELRTPLNGIIGIANLLKQTE 297

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     +    ++ S   +L +VND+LD+SKI++GK  L  + V++   +  +I L
Sbjct: 298 L----EEAQKQMVKLLEVSSQSLLGVVNDILDLSKIDAGKFVLSKKEVNIYHILKSSIEL 353

Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIST-THT 732
           ++  ANEK + +       +P+ I  D   + QI +N++SNAI FT  G  + +     +
Sbjct: 354 MRTKANEKLLDLNLEIDPRLPKYIETDPLRLNQILMNLISNAIKFTEKG-YVSLRVNQLS 412

Query: 733 SNEE---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
              +   V   V+DTG+G+      K  + + Q  +   ++  GTGLGL + K +V+   
Sbjct: 413 HEGDYITVKFEVKDTGIGIQPERKAKIFESYEQADDDTSLKYGGTGLGLGIVKKLVELQN 472

Query: 790 GKFYIFSTPAKGTLIEIIF 808
           GK    S   KG+      
Sbjct: 473 GKIDFNSEYGKGSNFWFEL 491


>gi|294849847|ref|ZP_06790587.1| sensor protein kinase walK [Staphylococcus aureus A9754]
 gi|294823395|gb|EFG39824.1| sensor protein kinase walK [Staphylococcus aureus A9754]
          Length = 608

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 81/388 (20%), Positives = 173/388 (44%), Gaps = 29/388 (7%)

Query: 426 ENMPQNGIEPEDVDTRINKRKM--EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           + + +  +   ++  R+ + +   E E  +L S++   SDGI   +R G I   N    K
Sbjct: 235 DEIGELALAFNNLSKRVQEAQANTESEKRRLDSVITHMSDGIIATDRRGRIRIVNDMALK 294

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           + G   EDI+       L       +        S  L    E+  +        ++   
Sbjct: 295 MLGMAKEDIIGYYMLSVLSLEDEFKLEEIQENNDSFLLDLNEEEGLIAR------VNFST 348

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
           I+++  F + Y   +HD++E +Q + +              + +F+A VSHE+RTPLT++
Sbjct: 349 IVQETGFVTGYIAVLHDVTEQQQVERE--------------RREFVANVSHELRTPLTSM 394

Query: 604 IGFSEVIKNQRFGPLGNPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
             + E ++    G   +     ++ +        ++ +VNDLL +SK+++    ++ E +
Sbjct: 395 NSYIEALEE---GAWKDEELAPQFLSVTREETERMIRLVNDLLQLSKMDNESDQINKEII 451

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
             +  +++ I+  ++ A  K I               D   + Q+  N+++NA+ ++   
Sbjct: 452 DFNMFINKIINRHEMSA--KDITFIRDIPKKTIFTEFDPDKMTQVFDNVITNAMKYSRGD 509

Query: 723 GQIIISTTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
            ++            + +R++D G+G+   +++K    F ++  ++  +  GTGLGL ++
Sbjct: 510 KRVEFHVKQNPLYNRMTIRIKDNGIGIPINKVDKIFDRFYRVDKARTRKMGGTGLGLAIS 569

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           K +V+A+ G+ +  S   +GT I I  P
Sbjct: 570 KEIVEAHNGRIWANSVEGQGTSIFITLP 597


>gi|223043560|ref|ZP_03613605.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           capitis SK14]
 gi|222443048|gb|EEE49148.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           capitis SK14]
          Length = 565

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 82/397 (20%), Positives = 176/397 (44%), Gaps = 31/397 (7%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRK--MEIEVMQLCSILEATSDGIAIINREGIIL 475
                   +      +   ++  R+ K     +I+  +L + LE     + +I++ G I+
Sbjct: 191 VRVPESNVKETRALFVTTNELARRLQKLNNSQKIQSNRLKTTLENIPSSVLMIDKHGEIV 250

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
             N A  ++F  P + +  K +  F++ +   ++          +     +     +   
Sbjct: 251 VANHAYYEVFS-PDQQVENKNYIGFIDDSIEKLIIESFR----TEKVIYDQIEVDINNVH 305

Query: 536 EKLLSLRIIIKKLPFS---SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
            K   +  +              + +HDI+  ++ +              + + +F+A V
Sbjct: 306 TKYFDVSCVPILSKSKKKLQGMVVVLHDITNLQKLE--------------NLRREFVANV 351

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIE 651
           SHE++TP+T+I GF+E +     G   + + ++ + N I +  N +  +V DLLD+S IE
Sbjct: 352 SHELKTPITSIKGFAETLIE---GAKNDEQSLDMFLNIILKESNRIESLVMDLLDLSHIE 408

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
             +  +    ++L E     I  +Q  A  K I I+     ++  I A    + Q+  N+
Sbjct: 409 -QQTEIETNYMNLSELAYNTIDNLQTQAINKNIEIQPEIEKDVI-IEAHENKIAQVITNL 466

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           LSNAI+++    ++I+       ++V L ++D G+G++  + +   + F ++  ++    
Sbjct: 467 LSNAINYSLEDNKVIVRV-FREGKKVNLEIQDFGIGISAKDQKHIFERFYRVDKARSRDS 525

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            GTGLGL + K +V+A+ G+  I S   +G+  ++ F
Sbjct: 526 GGTGLGLSITKHIVEAHNGRININSRLGEGSTFKVTF 562


>gi|223935238|ref|ZP_03627156.1| multi-sensor hybrid histidine kinase [bacterium Ellin514]
 gi|223896122|gb|EEF62565.1| multi-sensor hybrid histidine kinase [bacterium Ellin514]
          Length = 1060

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 124/800 (15%), Positives = 247/800 (30%), Gaps = 124/800 (15%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD--LLKRQNTWYGK 146
           I+        S  + +  G    ++IG  + ++             +  L   + T   +
Sbjct: 158 INQQAVFIYNSPSIQRVAGYAPQELIGTSVFNLVHPDDHARVREDLEHCLQHPETTTVSE 217

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR---ALGKRLDKK 203
             +    G+  +  ++     + +   E SG                     +  RL  K
Sbjct: 218 FRVRHKNGS--WRYLESIGRNLLNEP-EISGV--VVNCRDVTDRRRVEHYNEVLSRLGLK 272

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV-------------------SSLT 244
            S     +     + +   D+F   +   +L   ++                     +  
Sbjct: 273 LSSATGSEGAAKIIVEVADDLFGWDACTLNLYSPDEDKIYPVLTIDTIRGEKLEISGTEI 332

Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
           + +            P L   +  +    D  TI                N       LS
Sbjct: 333 DKHPTTRTRRIINNGPELILRQEPITIGNDGITIGDKARPSASLMFVPIRNRTRVIGILS 392

Query: 305 HR--------------------------NHPSLSAYFDEGENLTPETVDKCPIPFFVYS- 337
            +                              +     E E       +  P   FV   
Sbjct: 393 IQSYRLKAYDEKDLAALQTLADYCGGALERIRIEQALRESERRFRHLFENSPDAIFVEDV 452

Query: 338 HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS-------- 389
           +G +  AN +   L        I         L  P+  +        L           
Sbjct: 453 NGTVLDANVAAGWLHAMPYRQLIGKNV---AELVPPEEHEKFRQNFQKLAAGEIRQVLGL 509

Query: 390 ----DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
               D   I    R   I ++ + +L +                      +  + +  + 
Sbjct: 510 SSTSDGRVIPVEVRTSQIDYSGKPALLLHVR-------------------DISERKEAEE 550

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE--Q 503
            ++   ++  S+ E + DG+ + +  GII++ N A  KL G   +++  KPFTV     +
Sbjct: 551 ALKGSEIRFHSVWENSVDGMRLTDENGIIIAVNEAFCKLVGMNRQELEGKPFTVTYAVGE 610

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS-LTMHDIS 562
           N    +  Y        + + +E+     + +   L       ++            DI+
Sbjct: 611 NLEQKLAFYRQRFQERTVARRIERKLTFRSGKTVNLEGANSYVEVHGQKPLLLGLFRDIT 670

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E K+ +++L H++K+              V+H+    LT I G + ++   R        
Sbjct: 671 EQKRLEDQLRHSQKMD-----AIGQLAGGVAHDFNNILTVIQGHASLL---RSSGKLEDF 722

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
            I  A  I ++ +    +   LL  S+    +  +  + + L+  VS    ++      +
Sbjct: 723 MITSAEQIVQAADRAAGLTRQLLTFSR----RQMMQPKLLDLNVVVSNMTKML-GRILGE 777

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST------------- 729
            I ++ ++A N+P + AD   ++Q+ LN+  N+      GGQ+ +               
Sbjct: 778 DIALQFNYAPNLPLVHADSGMMEQVLLNLAVNSRDAMRGGGQLTVKIFGMEITGLEMNEH 837

Query: 730 -THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
               +   V L+V DTG G+    L    +PF          G+GTGLGL     +V  +
Sbjct: 838 PEGRTGHFVCLKVSDTGCGIEPKNLPHIFEPFFTTKA----IGKGTGLGLATVYGIVKQH 893

Query: 789 MGKFYIFSTPAKGTLIEIIF 808
            G   + S+P  GT  ++  
Sbjct: 894 QGWIEVTSSPGVGTTFQVFL 913



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/228 (12%), Positives = 74/228 (32%), Gaps = 14/228 (6%)

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
           +    G+S L  A + + +     +++  +     A                 +   P  
Sbjct: 60  LPAYDGISALKFARQNTPDIPT--LLVSGAMGEEAAIEGF-----KAGATDYVLKHWPER 112

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
                   +   G   E  +    +  +        ++ E   D + IIN++ + +  + 
Sbjct: 113 LIPAVRRALSVAG---ERANRLRAEAALAQREKYFRALSENAIDIVTIINQQAVFIYNSP 169

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
           ++ ++ GY  ++++       +  +  + +   L   L      T+        K     
Sbjct: 170 SIQRVAGYAPQELIGTSVFNLVHPDDHARVREDLEHCLQHPETTTVS-EFRVRHKNGSWR 228

Query: 540 SLRIIIKKL---PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
            L  I + L   P  S   +   D+++ ++ ++      ++  K SS 
Sbjct: 229 YLESIGRNLLNEPEISGVVVNCRDVTDRRRVEHYNEVLSRLGLKLSSA 276



 Score = 38.5 bits (88), Expect = 5.2,   Method: Composition-based stats.
 Identities = 16/162 (9%), Positives = 38/162 (23%), Gaps = 43/162 (26%)

Query: 64  NTNYLDSENTFVFDPIPRTVRFTWN--------IDAHGYLKEISEELPKTIGNYAFKMIG 115
                   +   F          W          D +G +  ++E   K +G    ++ G
Sbjct: 547 EAEEALKGSEIRFHS-------VWENSVDGMRLTDENGIIIAVNEAFCKLVGMNRQELEG 599

Query: 116 MRLC-----------DVSDILHIDPNNHIGDLLKRQNTW-YGKTTLWPIEGTNLYVPIDL 163
                           ++          +   ++R+ T+  GKT       +     +++
Sbjct: 600 KPFTVTYAVGENLEQKLAFYRQRFQERTVARRIERKLTFRSGKTVNLEGANS----YVEV 655

Query: 164 AA-LPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
               P+             G+              +   K  
Sbjct: 656 HGQKPLL-----------LGLFRDITEQKRLEDQLRHSQKMD 686


>gi|229551250|ref|ZP_04439975.1| histidine kinase [Lactobacillus rhamnosus LMS2-1]
 gi|229315413|gb|EEN81386.1| histidine kinase [Lactobacillus rhamnosus LMS2-1]
          Length = 636

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 84/383 (21%), Positives = 165/383 (43%), Gaps = 48/383 (12%)

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
             +L S+L   +DG+   +R G ++  N+          ED++       L       + 
Sbjct: 264 RRRLDSVLAHMTDGVIATDRRGNVIIINQTALSFLNTKNEDVIGVSILKLLNIAKDYTLR 323

Query: 511 HYLTEILSL--DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568
             L     L  D  + L+   +        +   +I ++  F S     +HD++E ++  
Sbjct: 324 DLLEHQTELLLDFSEQLDHDLILR------VDFSLIQRETGFISGLVAVLHDVTEQQKI- 376

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI-EYA 627
                           + +F++ VSHE+RTPLT++  + E + +   G   +P+   ++ 
Sbjct: 377 -------------DRDRKEFVSNVSHELRTPLTSVRSYIEALSD---GAWKDPKLAPQFL 420

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV------------ 675
           N      + ++ ++NDLL +S+++SG    + E V+L+E  +  +               
Sbjct: 421 NVTQEETDRMIRMINDLLSLSRLDSGTSKFNLETVNLNEFFNYVLDRFDMMLKTDNEHTG 480

Query: 676 ---------QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726
                    Q    +KR  I+    +    +  D     Q+  NI++NAI ++P GG I 
Sbjct: 481 EARTAQPLPQPDGQKKRYSIKREITHEDLWVEIDTDKFMQVIDNIMNNAIKYSPDGGVIT 540

Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
                 +++ VIL + D G+G+   +L K    F ++  ++  +  GTGLGL ++K +V+
Sbjct: 541 ARL-FQTHDHVILSISDQGLGIPRQDLGKIFDRFYRVDKARSRKQGGTGLGLAISKEVVE 599

Query: 787 ANMGKFYIFSTPAKGTLIEIIFP 809
           A  G+ ++ S   +G+   I  P
Sbjct: 600 ALHGRIWVDSQEGRGSTFYISLP 622


>gi|220921597|ref|YP_002496898.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium nodulans ORS 2060]
 gi|219946203|gb|ACL56595.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium nodulans ORS 2060]
          Length = 830

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 116/682 (17%), Positives = 231/682 (33%), Gaps = 36/682 (5%)

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR-------LDK 202
               G    + +            +    R    +     +       +           
Sbjct: 161 LRSRGERFRLTVRTLGGRTIEAQGQAVSGRALLRLRELTGERQELVELRAMLQEARGSLS 220

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
             + L +              +    +                      D +  E+    
Sbjct: 221 VLAALLDAIPQPVWRRGRDGRLLWANAAYVAAVEAGDRERALAEGTELLDRVAREEAGRR 280

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
            S       +         +         +   S      +      S+ A         
Sbjct: 281 RSSGQGGALRVSAVMAGARRTLD---VTEVAVESGSVGIAVDVSELESVRADLQRQMEAN 337

Query: 323 PETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
             T+D+ P    ++     L + N ++  L        ++       +LDA + +     
Sbjct: 338 ARTLDQLPTAVAIFDARQRLIFHNAAYRQLWDL-DPGFLDGNPLDGEILDALRNARKLPE 396

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
           +            A  A      W          +P  +  +   +    G      D  
Sbjct: 397 QADFRSWKTGVLSAYRAAEAQENW--------WHLPDGRTLRVVADPNPQGGLTYLFDDV 448

Query: 442 INKRKMEIEVMQLCSI----LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP- 496
             +  +E     L  +    L+   + +A+   +G +   NRA + ++    E +  +P 
Sbjct: 449 SERVHLESRYNALMRVQSETLDTLREPVAVFGSDGRLKLANRAFTAIWRIGPELLGTQPH 508

Query: 497 ----FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
                 +    +        +   ++  +          + K+  +L             
Sbjct: 509 IDEVIALCRPLSPAEEPWTEIRGAVTGLMDARHALACRLALKDGTVLDCAAQPLP---DG 565

Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
              LT  D++     +  L+   +  E+ +  + +F+  VS+E+R+PLT IIGF+E++ +
Sbjct: 566 ATLLTHIDVTASVNVERALTEKNEALERTARLRDEFVHHVSYELRSPLTNIIGFTELLGD 625

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
           +  G L N R  EYA++I RS   +L I+ND+LD++ I++G M L  E V +   ++ A+
Sbjct: 626 ETVGAL-NTRQREYADHIMRSSAALLVIINDILDLASIDAGSMELTREVVDVQATIAAAV 684

Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
             V+    E  I +      +I   +AD + ++QI  N+LSNAI F+  G  +++    T
Sbjct: 685 RGVEDRLAEAAITLDRDVPADIGGFVADGKRIRQILFNLLSNAIGFSAPGQTVVVQARKT 744

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
              E+   V D G GM    + +    F    ++   R  G GLGL + ++ V+ + G+ 
Sbjct: 745 DR-EIAFAVIDQGRGMPPEVVARVFDRFE--SHTLGTRHRGVGLGLSIVRSFVELHGGRI 801

Query: 793 YIFSTPAKGTLIEIIFPLYDTS 814
            I S P +GT +   FP+  + 
Sbjct: 802 DIASAPGQGTKVTCTFPISGSE 823



 Score = 88.9 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 42/403 (10%), Positives = 103/403 (25%), Gaps = 33/403 (8%)

Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE 245
             R  +D  AL    +++       +            +   +S  P   +         
Sbjct: 90  DLRGAHDRAALLLGSERQIIITWCGRDEPQIEGDASLAMDGTRSASPRRVLAFGTWLSAA 149

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
             A  D  + T +       E             +    +      L    + + E    
Sbjct: 150 DAAALDAAVDTLRSR----GERFRLTVRTLGGRTIEAQGQAVSGRALLRLRELTGERQEL 205

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364
               ++        ++    +D  P P +     G L +AN ++        V  +E   
Sbjct: 206 VELRAMLQEARGSLSVLAALLDAIPQPVWRRGRDGRLLWANAAY--------VAAVEAGD 257

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
               L +  +L D  A +     RS     A             +++           + 
Sbjct: 258 RERALAEGTELLDRVAREEAGRRRSSGQGGALRV----------SAVMAGARRTLDVTEV 307

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
                  GI  +  +    +  ++ ++      L+     +AI +    ++  N A  +L
Sbjct: 308 AVESGSVGIAVDVSELESVRADLQRQMEANARTLDQLPTAVAIFDARQRLIFHNAAYRQL 367

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL-------EKITLGSTKEEK 537
           +      +   P    +     +                 L        +       + +
Sbjct: 368 WDLDPGFLDGNPLDGEILDALRNARKLPEQADFRSWKTGVLSAYRAAEAQENWWHLPDGR 427

Query: 538 LLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
            L +             +    D+SE    +++ +   ++  +
Sbjct: 428 TLRVVADPNP---QGGLTYLFDDVSERVHLESRYNALMRVQSE 467



 Score = 64.7 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 42/390 (10%), Positives = 96/390 (24%), Gaps = 44/390 (11%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG---DLLKRQNT 142
            W     G L   +                     V+ +   D    +    +LL R   
Sbjct: 233 VWRRGRDGRLLWANAAY------------------VAAVEAGDRERALAEGTELLDRVAR 274

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRG-FGIVHVNRVDNDPRALGKRLD 201
                     +G  L V   +A         E +   G  GI          RA  +R  
Sbjct: 275 EEAGRRRSSGQGGALRVSAVMAGARRTLDVTEVAVESGSVGIAVDVSELESVRADLQRQM 334

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
           +  +   +      ++   +  +    +     ++ +      +      ++L   +   
Sbjct: 335 EANARTLDQLPTAVAIFDARQRLIFHNAAY--RQLWDLDPGFLDGNPLDGEILDALRNAR 392

Query: 262 LTSEESSL-----PEQEDFHTINLNQYTKKQYFGTLQNNSKESFE-------YLSHRNHP 309
              E++            +      +       G       +          +       
Sbjct: 393 KLPEQADFRSWKTGVLSAYRAAEAQENWWHLPDGRTLRVVADPNPQGGLTYLFDDVSERV 452

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
            L + ++    +  ET+D    P  V+ S G L  AN +F  + +    + +     +  
Sbjct: 453 HLESRYNALMRVQSETLDTLREPVAVFGSDGRLKLANRAFTAIWRIGP-ELLGTQPHIDE 511

Query: 369 L--LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
           +  L  P          +          A  A    +       L     P    +    
Sbjct: 512 VIALCRPLSPAEEPWTEIRGA-VTGLMDARHALACRLALKDGTVLDCAAQPLP--DGATL 568

Query: 427 NMPQNGIEPEDVDTRINKR-KMEIEVMQLC 455
               +     +V+  + ++ +      +L 
Sbjct: 569 LTHIDVTASVNVERALTEKNEALERTARLR 598



 Score = 46.6 bits (109), Expect = 0.019,   Method: Composition-based stats.
 Identities = 34/345 (9%), Positives = 74/345 (21%), Gaps = 37/345 (10%)

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
             +  PLL +   +L        + +           L    +  +    H         
Sbjct: 33  AAQAQPLLPATG-ALAHNAMALALLIGLIVFSTILSLLHIRERGRWARREH--DLVAELA 89

Query: 315 FDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
              G +     +        +   G           L    +               +  
Sbjct: 90  DLRGAHDRAALLLGSERQIIITWCGRDEPQIEGDASLAMDGTRSASPRRVLAFGTWLSAA 149

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
            +         L               T++     ++                    G  
Sbjct: 150 DAAALDAAVDTLRSRGERFR------LTVRTLGGRTIEAQGQAVSGR-ALLRLRELTGER 202

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
            E V+ R   ++    +  L ++L+A    +    R+G +L  N A              
Sbjct: 203 QELVELRAMLQEARGSLSVLAALLDAIPQPVWRRGRDGRLLWANAAYVA----------- 251

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII---------I 545
                                   LD     E     S+ +   L +  +         +
Sbjct: 252 -------AVEAGDRERALAEGTELLDRVAREEAGRRRSSGQGGALRVSAVMAGARRTLDV 304

Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
            ++   S       D+SE +  +  L    +   +        +A
Sbjct: 305 TEVAVESGSVGIAVDVSELESVRADLQRQMEANARTLDQLPTAVA 349


>gi|16766623|ref|NP_462238.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|16421886|gb|AAL22197.1| sensory histidine kinase in two-component regulatory system with
           ArcA [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|312914355|dbj|BAJ38329.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           T000240]
          Length = 778

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 84/435 (19%), Positives = 177/435 (40%), Gaps = 17/435 (3%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L +          +L  +Q     +     I   +  +         ++ E
Sbjct: 81  EESRQRLSRLVQKLEEMRERDLKL-NVQLKDNIAQLNQEIADREKAEAELQETFEQLKVE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             +    + ++E +   L S L+A+ D +   N +      NRA+  L G   + ++   
Sbjct: 140 IKEREEAQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCY 554
                       +     ++   ++  T E+        +    +R +    ++      
Sbjct: 200 PEDVYSPEAAEKVIETDEKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGL 259

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+        +   E+ S  K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 260 MGFGRDITERKR-------YQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTD 312

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     +Y   I  S   + +I ND++D+ K+E  K+ L  +P+     +++  +L
Sbjct: 313 LTA----EQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPIDFTSFMADLENL 368

Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
             L A +K +         +P  ++ D   ++QI  N++SNA+ FT  G Q+ +   +  
Sbjct: 369 SGLQAQQKGLRFVLEPTLPLPHKVITDGTRLRQILWNLISNAVKFTQQG-QVTVRARYDE 427

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMGKF 792
            + +   V D+G+G+   E +K    + Q+ +S   +   GTG+GL +++ +     G  
Sbjct: 428 GDMLHFEVEDSGIGIPQDEQDKIFAMYYQVKDSNGGKPATGTGIGLAVSRRLAKNMGGDI 487

Query: 793 YIFSTPAKGTLIEII 807
            + S P KG+   + 
Sbjct: 488 TVSSLPGKGSTFTLT 502


>gi|326625078|gb|EGE31423.1| aerobic respiration control sensor protein [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
          Length = 788

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 85/435 (19%), Positives = 178/435 (40%), Gaps = 17/435 (3%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L +          +L  +Q     +     I   +  +         ++ E
Sbjct: 91  EESRQRLSRLVQKLEEMRERDLKL-NVQLKDNIAQLNQEIADREKAEAELQETFEQLKVE 149

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             +    + ++E +   L S L+A+ D +   N +      NRA+  L G   + ++   
Sbjct: 150 IKEREEAQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 209

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCY 554
                       +     ++   ++  T E+        +    +R +    ++      
Sbjct: 210 PEDVYSPEAAEKVIETDEKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGL 269

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+        +   E+ S  K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 270 MGFGRDITERKR-------YQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTD 322

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     +Y   I  S   + +I ND++D+ K+E  K+ L  +PV     +++  +L
Sbjct: 323 LTA----EQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFMADLENL 378

Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
             L A +K +         +P  ++ D   ++QI  N++SNA+ FT  G Q+ +   +  
Sbjct: 379 SGLQAQQKGLRFVLEPTLPLPHKVITDGTRLRQILWNLISNAVKFTQQG-QVTVRARYDE 437

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMGKF 792
            + +   V D+G+G++  E +K    + Q+ +S   +   GTG+GL +++ +     G  
Sbjct: 438 GDMLHFEVEDSGIGISQDEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDI 497

Query: 793 YIFSTPAKGTLIEII 807
            + S P KG+   + 
Sbjct: 498 TVSSLPGKGSTFTLT 512


>gi|326202278|ref|ZP_08192147.1| multi-sensor signal transduction histidine kinase [Clostridium
           papyrosolvens DSM 2782]
 gi|325987396|gb|EGD48223.1| multi-sensor signal transduction histidine kinase [Clostridium
           papyrosolvens DSM 2782]
          Length = 700

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 95/421 (22%), Positives = 182/421 (43%), Gaps = 22/421 (5%)

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL-------CSILEAT 461
           +   +     E   + P N+  + I   D   +  +++  +    L         I+  +
Sbjct: 252 SYFFLYKAIIETGLKRPYNILYDKINNIDNQLKQEQQQRMMIEDMLVKNDRCYELIINNS 311

Query: 462 SDGIAIINREGIILSTNRAVSKLFG-YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520
           SD I +   EG ++  N    K+FG Y   +++      F+  +   ++  ++  +  L 
Sbjct: 312 SDAIIVT-SEGKLIFANDRAEKIFGIYTSGELIGMELLSFVHPDDRILVRKHME-MSCLG 369

Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY--SLTMHDISEWKQEKNKLSHAKK-- 576
               ++      + + +++ L      L +         + DIS  KQ     S  +   
Sbjct: 370 QASPVQYEYKIMSHKGRIIDLESTSDILVYQGKLSNISILKDISSRKQISKLKSDIRDNE 429

Query: 577 ----IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI---KNQRFGPLGNPRYIEYANY 629
                  + +   ++F + +SHE++TPL  I+G  +++    +            +Y   
Sbjct: 430 RVLNETIEYNKLLTEFFSNISHELKTPLNVILGAIQILNLPHDFELPQPFEENLNKYHRV 489

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           + ++   +L +VN+L+D+SK +SG + L+    ++   V E    V  Y   + + I   
Sbjct: 490 MKQNCYRLLRLVNNLIDLSKFDSGFLKLNLSNQNIVSVVEEITLSVADYVESRGLSITFD 549

Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749
                  I  D   +++I LN+LSN+I FT   G I+IS +    E V + VRDTG+G+ 
Sbjct: 550 TDCEEKIIAVDADKIERIILNLLSNSIKFTDKDGSILISIS-DKGEMVSISVRDTGIGIP 608

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             +LE   + FGQ+  +     EG+G+GL L K +V+ + G   I S   KG+ + I  P
Sbjct: 609 KDKLETIFERFGQVDKTLTRNREGSGIGLSLVKTLVEMHGGVIKISSMEGKGSEVYIELP 668

Query: 810 L 810
           +
Sbjct: 669 V 669


>gi|83944134|ref|ZP_00956590.1| probable sensor/response regulator hybrid [Sulfitobacter sp. EE-36]
 gi|83845001|gb|EAP82882.1| probable sensor/response regulator hybrid [Sulfitobacter sp. EE-36]
          Length = 1064

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 103/648 (15%), Positives = 216/648 (33%), Gaps = 32/648 (4%)

Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNK 239
           ++   R   D  A    L ++  +  E +                +       +      
Sbjct: 309 VLRAIRQRGDSLAEVAALREQQINAREEENRSIIENSVVGIFILDERREILFANHAALEI 368

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
                +            +   L +E              L+       + TL    + +
Sbjct: 369 FDKREDGMGGLPLTKFVTEAGWLPAEAGYNATGTKHDGSTLHLDLHYNEWETLNGVKRIT 428

Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVD 358
                              +      +    I  F +         +P++  +       
Sbjct: 429 AIVRDVSVEVGAVGELAGIKERYDHALAGSEIGVFEIDLMSGTSVVSPTWRKIMDVGPEI 488

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH-TIQWNRENSLAMTFIP 417
           +      LS +          A +  +  +++R+      +   + +W R +++ +    
Sbjct: 489 EDTQEEFLSRIHPDDLPRLIEADQDCITGKAERSRTEYRMQFGESWRWMRSDAVVV---- 544

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
                     +   G + +    R  +  +E    +  ++L A   G+A +N  G   S 
Sbjct: 545 --DRADDGSAIRMVGTQSDITALRHARNALEASEKRFRTVLNAAPVGMATLNSNGQFTSV 602

Query: 478 NRAVSKLFGYPVEDILRK-PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
           N A+ +L GY  + +  +      + +    +M   +T+       +          K+ 
Sbjct: 603 NNAMCELTGYSQKAMTDQFNLAQIIPEEDVKLMRDIVTKFTESGSNEVYRGEHPILHKDG 662

Query: 537 KLLS----LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
                   +     K   +  +   ++DI++ K+                  K++F++ V
Sbjct: 663 GQRWGLFNITWTFDKNEGAYVFIAQVNDITDQKKIDE--------------IKNEFVSTV 708

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHE+RTPLT+I G    +             +        + + +  IVND+LD+ KI S
Sbjct: 709 SHELRTPLTSIKGAL-GLIEMSARDTMPASALRLIEIARNNADRLTTIVNDILDLEKISS 767

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712
           GK++    P+SL+E +S A+  +  +A      +     +    + AD   + Q+  N++
Sbjct: 768 GKIDFDLSPMSLNEVISSAVQEMMPFAVTHNTKLVMDLPDTDINVTADWSRMMQVLANLM 827

Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           SNA  ++  G  + I    T  +  I+ V++ G G+      +  + F Q   S      
Sbjct: 828 SNACKYSTEGTDVTIKAE-TIGDMAIVYVQNFGPGVPENFKNRIFQAFSQADGSDTRAKG 886

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820
           GTGLGL + + +V    G     S P+  T+     PL   +  +D +
Sbjct: 887 GTGLGLNITRQIVWRQGGNIGFESKPSGTTIFWFTCPLATDAEGYDVL 934


>gi|332666984|ref|YP_004449772.1| signal transduction histidine kinase with CheB and CheR activity
            [Haliscomenobacter hydrossis DSM 1100]
 gi|332335798|gb|AEE52899.1| signal transduction histidine kinase with CheB and CheR activity
            [Haliscomenobacter hydrossis DSM 1100]
          Length = 1316

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 110/466 (23%), Positives = 185/466 (39%), Gaps = 46/466 (9%)

Query: 385  MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
             + + +    AA A +++I  + E +        E+     E +     E E     I  
Sbjct: 701  RIKKLEEELAAARAYMNSITQDHEAANEELQSANEEIISSNEELQSLNEELETSKEEIES 760

Query: 445  RKME------------IEVMQL----CSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
               E             ++ +L     +IL    + + ++++   I S N +    F   
Sbjct: 761  TNEELTTSNHELNARIQQIEELYTYYETILATVHEPMLVLDKNIRIRSANESFCATFKVA 820

Query: 489  VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
             EDI+                   L E +     +                +L +   ++
Sbjct: 821  EEDIIGTSMFKLSNNQWNIPALRELLEDIVPKNNRFHNFEVDLDFSIVGPKTLLLNAHRI 880

Query: 549  ----PFSSCYSLTMHDISEWKQEKNKLSHAKKI------------------AEKESSHKS 586
                       LTM DI++ ++   +L   +K                   AE+    K 
Sbjct: 881  VQKSKNEELIVLTMVDITDARKLALELQKKEKQVLDELMEAKRIAEQKTKIAEEAVKAKQ 940

Query: 587  DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
             FL+ +SHEIRTP+ AIIGF+ V+   +     N    EY N I  SG  ++ ++ND+LD
Sbjct: 941  QFLSNMSHEIRTPMNAIIGFTNVVMKTKL----NEAQKEYINAIKVSGESLIILINDILD 996

Query: 647  ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVK 705
            ++K+E+GKM     P  L  +VS+ + L +    EK +++   +  N+P IL  D   ++
Sbjct: 997  LAKVEAGKMVFEHSPFRLFSSVSDMLHLFETKMQEKNLVLIKQYDTNVPEILVGDPVRLR 1056

Query: 706  QIALNILSNAIHFTPSGG-QIIISTTHTSNEEV--ILRVRDTGVGMTNYELEKAMKPFGQ 762
            QI LN++SNA+ FT +G   + +       + V     V DTG+G+    L++    F Q
Sbjct: 1057 QIMLNLISNAVKFTNAGKITVRVDLLKEDQDHVSVEFSVSDTGIGIPENNLKQIFDAFEQ 1116

Query: 763  IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            I         GTGLGL + K MV    G   + S   KG+      
Sbjct: 1117 IAPETTRLNGGTGLGLAIVKQMVKLQGGNVKVKSKVDKGSTFSFSL 1162


>gi|163793550|ref|ZP_02187525.1| two component sensor kinase [alpha proteobacterium BAL199]
 gi|159181352|gb|EDP65867.1| two component sensor kinase [alpha proteobacterium BAL199]
          Length = 414

 Score =  318 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 102/364 (28%), Positives = 177/364 (48%), Gaps = 4/364 (1%)

Query: 448 EIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
            +   +  +ILE + D I + N E G+I+  N     LF     +++    +        
Sbjct: 46  RVAEEKHRAILETSGDAIVLANAETGLIVEANDRAGVLFACDASELVGMHQSELHPSEQR 105

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQ 566
                      +       +            + +     ++           DIS  K 
Sbjct: 106 DRYRWDFRNARNAGRMLLPDVTIQRRDGTVSSVEITARTIEIDGVLTLVGFYRDISHRKA 165

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
            + +L  A++ A   S  K+ FLA +SHE+RTPL AIIG SE+I+++ +G +G+P+Y EY
Sbjct: 166 REYELIAAREAARAASDSKTRFLANMSHELRTPLNAIIGMSELIRSELWGAVGHPKYAEY 225

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
           A  I+ SG  +LD++ND+LD S++E GK+ LH E + + + + ++   +     E+ +  
Sbjct: 226 ATDINDSGLHLLDLINDILDFSRVEMGKVTLHDEDIDVTDLLEQSRRTIAGLLEERDLTC 285

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
               + + P + AD R+++Q+ LN+LSNA+  TP GG++ I++       + + V DTG 
Sbjct: 286 VVRVSGS-PILTADRRAMRQMLLNLLSNAVKHTPPGGRVTITSDVDGQGGLAIVVEDTGR 344

Query: 747 GMTNYELEKAMKPFGQIPNSQQ-IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           G+    LE   +PF  +       R  G GLGL + K +V+ + G+  I S+   GT + 
Sbjct: 345 GIPAERLEWITEPFN-VDEEISVTRQGGAGLGLAITKRLVERHGGQISIDSSEGFGTSVR 403

Query: 806 IIFP 809
           + FP
Sbjct: 404 LSFP 407


>gi|167582935|ref|ZP_02375809.1| multi-sensor hybrid histidine kinase [Burkholderia thailandensis
           TXDOH]
          Length = 986

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 112/629 (17%), Positives = 219/629 (34%), Gaps = 33/629 (5%)

Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255
           L    ++ F     IKK               +     L + ++ +      A   + L 
Sbjct: 122 LLAMSERAFESGRWIKKKTPLTNAVYMIGADGRFVALSLHVISRAALPLAQVAQLPEQLP 181

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE--YLSHRNHPSLSA 313
                             D   +           G +    +       L  R  P +  
Sbjct: 182 R---AWPDVAAMVRAAAVDPKHVPDGVIWLPPREGVITGEQRMRIASWALDGRGRPIVLM 238

Query: 314 YFDEGENLTPETVDKCPIP---FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
                       +D          V   GN+  +      +T             +  L 
Sbjct: 239 VQTMRPERLLNALDDDSRGGAFAVVDRTGNILLSVSPRADVTNLARALAGARVDHIEQLF 298

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN--RENSLAMTFIPFEKANQFPENM 428
                         ++  +          +++I+       +     +            
Sbjct: 299 ---------RDGRFVIRDAIPETDWTLLYVYSIRTMMYDVAARMCKILGVALFGFAFLWW 349

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQL-CSILEATSDGIAIIN-REGIILSTNRAVSKLFG 486
               +    +     +     E  QL  +++     G+A+I   +G +L  N+A+++   
Sbjct: 350 GIVLVHRRVLTPSYVRALRLQESEQLNRTLIRTAPIGLALIGEADGTVLLRNKAMARYET 409

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
               + L +     L              I+  ++        +     E  L + +   
Sbjct: 410 GSSGEPLSQRLWQALAHVPDEHAPARRRAIVGHEVALAG----VNGAAGETYLLVNVAHV 465

Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
           K   +     T++DI+  K  +  L  A++ A++ +  KS FLA +SHEIRTPL A+IG 
Sbjct: 466 KYRGAQALLATVNDITARKLAEQSLDEARRAADQANRSKSVFLATMSHEIRTPLNALIGN 525

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
            E++K                  +  + + +L I+ND+LD+SK+E+G++ +   P     
Sbjct: 526 LELMKRGPLA----DAQRRRLEIVASTSSALLHILNDVLDLSKVEAGQLRIDAVPFDCAV 581

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQI 725
            + +  +  Q  A  K + +    A ++  +   D   ++QI  N+L NAI FT +G   
Sbjct: 582 LLRDVTATFQPLATAKGLHLGCDIAPDMAPLRIGDPIRIRQIVANLLGNAIKFTDTGS-- 639

Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
            ++     ++ + LRV DTG+G++   +    + + Q  +S   +  GTGLGL L + +V
Sbjct: 640 -VTLFAAGDDVIELRVVDTGIGISPQAVATIFELYKQADDSIHRKYGGTGLGLALCRRLV 698

Query: 786 DANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           +A  G+    S P +G+   +  PL  T+
Sbjct: 699 NAMGGEIAARSVPGEGSEFRVGIPLPVTA 727



 Score = 38.9 bits (89), Expect = 4.0,   Method: Composition-based stats.
 Identities = 32/369 (8%), Positives = 82/369 (22%), Gaps = 21/369 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + I A G    +S  +         ++   +L +       D    +            
Sbjct: 146 VYMIGADGRFVALSLHVISRAALPLAQV--AQLPEQLPRAWPDVAAMVRAAAVDPKHVPD 203

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
                P     +     +  +  ++ +    G     +V   R +    AL         
Sbjct: 204 GVIWLPPREGVITGEQRMR-IASWALDGR--GRPIVLMVQTMRPERLLNALDDDSRGGAF 260

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
            + +           + D+ +        R+ +      +      D +    + LL   
Sbjct: 261 AVVDRTGNILLSVSPRADVTNLARALAGARVDHIEQLFRDGRFVIRDAIPETDWTLLYVY 320

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
                  +    +          F  L          +   ++        E E L    
Sbjct: 321 SIRTMMYDVAARMCKILGVALFGFAFLWWGIVLVHRRVLTPSYVRA-LRLQESEQLNRTL 379

Query: 326 VDKCPIPFFV--YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
           +   PI   +   + G +   N +        S + +         L        +   P
Sbjct: 380 IRTAPIGLALIGEADGTVLLRNKAMARYETGSSGEPLSQ------RLWQALAHVPDEHAP 433

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
                     +A +          E  L +     +                +    ++ 
Sbjct: 434 ARRRAIVGHEVALAGVNGA---AGETYLLVNVAHVKYRGAQAL----LATVNDITARKLA 486

Query: 444 KRKMEIEVM 452
           ++ ++    
Sbjct: 487 EQSLDEARR 495


>gi|90407447|ref|ZP_01215631.1| sensor histidine kinase FexB [Psychromonas sp. CNPT3]
 gi|90311478|gb|EAS39579.1| sensor histidine kinase FexB [Psychromonas sp. CNPT3]
          Length = 751

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 88/392 (22%), Positives = 178/392 (45%), Gaps = 21/392 (5%)

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
           +      +E E ++ +  + ++E   + L S L+ + D +   + +G  ++ N+A+ K+ 
Sbjct: 103 DQQKTQALENEIIERQRTQLQLEEGSILLRSFLDTSPDLVFHRDLQGCFVNCNKAMQKIS 162

Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
           G     +L         ++    +  Y  ++   +  Q  E        ++    +R   
Sbjct: 163 GKTERQMLGLTPFDIYSESYAREVVEYDQQVKETEQEQIHEHWLQYPNGQQAYFEIRSFP 222

Query: 546 KKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
                           DI+E K         ++  EK S  K+ F+A +SHE+RTPL  I
Sbjct: 223 LFNTQKKCVGIIGFGRDITERK-------IHQESLEKASRDKTTFIATISHELRTPLNGI 275

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +G S ++ +++     N    ++   I  S   + +I ND++D+ K++  ++NL  + + 
Sbjct: 276 VGLSRMLLDEQL----NAEQHKHLKTIHMSAITLGNIFNDIVDLDKLDRRRLNLVCDQID 331

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSG 722
           + + V +  SL  +   +K +++       +P  I AD   ++Q+  N++SNA+ FT +G
Sbjct: 332 MFDFVGDLESLAFIQTEQKGLVLNFEQEGMLPDYIEADDTRLRQVLWNLISNAVKFTKTG 391

Query: 723 GQIIIST----THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
             I I       +  +  +   V D+G+G+   +L+K    + Q+   Q     GTG+GL
Sbjct: 392 -HITIRCFAKRQNAQHATLCFEVEDSGIGIPAQQLDKIFSMYYQVQGDQHAT--GTGIGL 448

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            +++ +VDA  GK  + ST  KG+   +  P+
Sbjct: 449 AVSQQIVDAMGGKLSVKSTFGKGSTFTLSLPV 480


>gi|117924203|ref|YP_864820.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117607959|gb|ABK43414.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 894

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 97/577 (16%), Positives = 203/577 (35%), Gaps = 44/577 (7%)

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
            ++    + +  +  PE                     +        Y++     +    
Sbjct: 212 ASQPSNGIIALATGSPEHIIASNAPQTLLPGTLLKALEREYIIAGKTYINLEGRGTSRTM 271

Query: 315 FDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
            +    ++ E  ++      +                 +  +   + +A  L  L     
Sbjct: 272 IEMVSLISSELAEERSQDILIT------------ERQQRAITAFVLILASILIMLWVTRT 319

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
           +   +              +        +         +        +     +      
Sbjct: 320 IRRVSLRISEFSQDKLGAPLTQEGSHDELDTLASRFERLMQEVVRTRDNLRGEI------ 373

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
                    ++++E EV +L   +E +   + I + EG +L  N     L GY  ++++ 
Sbjct: 374 -------EERKRIEAEVTKLSQAVEQSPTALLITDTEGSVLYVNPEFVSLTGYRPDEVIG 426

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC- 553
           +   +     T       L   L+       + +     K  K    +  I  +  S   
Sbjct: 427 RNPRMLKSGETARETYRDLWGTLNQGRAW--QGVFRNRKKNGKRYWEKNTISPIRDSDGK 484

Query: 554 ---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
              +     DIS     + ++ HA+  AE  +  KS+FL  ++HE RTPL  I G  ++I
Sbjct: 485 VINFMSIKEDISARIALEKEIEHARTAAETANQVKSEFLTHMTHEFRTPLNIIKGCVKLI 544

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
           +++      + +       I      +  ++ DL+D+S++ES + +LH EP  L   ++E
Sbjct: 545 RDENN---LSDKQGRQLENILDGATHLATMIQDLVDLSRVESEQFHLHEEPCDLSHLLTE 601

Query: 671 AISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
               ++L + EK++      +  +P  I+ D   ++    N+L+NAI FT  G Q+ ++ 
Sbjct: 602 LHDEMELKSQEKQLTFAVEVSPTLPPEIMLDAARLRHALTNLLTNAIKFTHEG-QVSLNC 660

Query: 730 THTSN-----EEVILRVRDTGVGMTNYELEKAMKPFGQIP-NSQQIRGEGTGLGLPLAKA 783
            +          +   + DTGVG+ + ++    +PF Q    +      G GLGL + K 
Sbjct: 661 WYEGETKARTGTLHFVISDTGVGIPSEQIHAIFEPFNQGDMPAMTR--GGVGLGLTITKR 718

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820
           +V+   G   + S P  G++  I  P      P + +
Sbjct: 719 LVEVMDGTIEVRSEPDHGSVFHIQLPCRKVWRPQEAL 755



 Score = 61.2 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 15/138 (10%), Positives = 36/138 (26%), Gaps = 5/138 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI-DPNNHIGDLLKRQNTWYGKT 147
            D  G +  ++ E     G    ++IG     +       +    +   L +   W G  
Sbjct: 400 TDTEGSVLYVNPEFVSLTGYRPDEVIGRNPRMLKSGETARETYRDLWGTLNQGRAWQGVF 459

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                 G   +    ++  PI   + +   F    I              +         
Sbjct: 460 RNRKKNGKRYWEKNTIS--PIRDSDGKVINFM--SIKEDISARIALEKEIEHARTAAETA 515

Query: 208 HEIKKGHSSVEKEKYDIF 225
           +++K    +    ++   
Sbjct: 516 NQVKSEFLTHMTHEFRTP 533


>gi|253699011|ref|YP_003020200.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21]
 gi|251773861|gb|ACT16442.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21]
          Length = 647

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 90/389 (23%), Positives = 158/389 (40%), Gaps = 14/389 (3%)

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
               ++ E  +    + ++        +IL      I   + +      N       G  
Sbjct: 20  RTRELKQEIQERLRAEGQLAEARDHYLNILAEAPALIWRADTQAKCDWFNNTWLSFTGRT 79

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
           +E+     +   +  +                +    E        +     +  I +  
Sbjct: 80  MEEEYGDGWAQGVHTDDLERCVAIWLGAFHRKVP--FEMEYRLRRHDGVFRWILDIGRPF 137

Query: 549 PFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
                    Y     DI++ K  + +L  A++ AE  S  K++FLA +SHEIRTP+ +II
Sbjct: 138 SGLDGSFAGYIGYCFDITDRKGAEMELIVAREAAEAASKAKTEFLANMSHEIRTPMNSII 197

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           G ++++              EY + I  S   +L I+ND+LD+SK+E+GK+ L     SL
Sbjct: 198 GMTQLLAYTELSA----EQKEYVDGILTSSEGLLAIINDILDLSKVEAGKIELESRNFSL 253

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG 723
            + ++E I      A+EK + ++      IP  ++ D   +KQ+ LN + NAI FT SG 
Sbjct: 254 RQNINEIIRTQTAAAHEKGLQLKVFIPEEIPDALVGDRLRLKQVLLNTIGNAIKFTASGS 313

Query: 724 ---QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
               + ++        +   + DTG+G+    L++   PF Q   S   R  GTGLGL +
Sbjct: 314 IAVTVALAEKQEDAARLTFSIADTGIGIAPESLDRIFAPFAQEDTSTTRRYGGTGLGLSI 373

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +  +V    G+ +  S    G+      P
Sbjct: 374 STKLVRLMGGRIWAESRKNTGSTFHFEIP 402



 Score = 47.3 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 38/418 (9%), Positives = 95/418 (22%), Gaps = 27/418 (6%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD-LLKRQNTW 143
             W  D        +       G    +  G           ++    I      R+  +
Sbjct: 55  LIWRADTQAKCDWFNNTWLSFTGRTMEEEYGDGWAQGVHTDDLERCVAIWLGAFHRKVPF 114

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +  L   +G  ++  I     P    +  F+G+ G+                    + 
Sbjct: 115 EMEYRLRRHDG--VFRWILDIGRPFSGLDGSFAGYIGY--CFDITDRKGAEMELIVAREA 170

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
                + K    +    +              +     S  +       +  +E    + 
Sbjct: 171 AEAASKAKTEFLANMSHEIRTPMNSIIGMTQLLAYTELSAEQKEYVDGILTSSEGLLAII 230

Query: 264 SEESSLPEQEDF------HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
           ++   L + E           +L Q   +          ++  +           A   +
Sbjct: 231 NDILDLSKVEAGKIELESRNFSLRQNINEIIRTQTAAAHEKGLQLKVFIPEEIPDALVGD 290

Query: 318 GENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSV--DDIEIAGGLSTLLDAPKL 375
              L    ++         + G++               +     +   G++        
Sbjct: 291 RLRLKQVLLNTIGNAIKFTASGSIAVTVALAEKQEDAARLTFSIADTGIGIAPESLDRIF 350

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
           +           R   T +  S     ++       A +         F         + 
Sbjct: 351 APFAQEDTSTTRRYGGTGLGLSISTKLVRLMGGRIWAESRKNTGSTFHFEIPFRLCAKKA 410

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA-VSKLFGYPVEDI 492
               +    RK+  +  +L          I + + +      NR  + KL G    ++
Sbjct: 411 RPKASLNTARKVVWDGAKLR---------ILLADDQ----EMNRNIMEKLLGRLGHEL 455


>gi|192360040|ref|YP_001981948.1| two-component hybrid sensor and regulator [Cellvibrio japonicus
           Ueda107]
 gi|190686205|gb|ACE83883.1| two-component hybrid sensor and regulator [Cellvibrio japonicus
           Ueda107]
          Length = 668

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 111/510 (21%), Positives = 212/510 (41%), Gaps = 22/510 (4%)

Query: 313 AYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
                         +     F+ +         +  F     Y   D  +I    + +  
Sbjct: 18  ELLKLTLGRFKRIFNGSGYGFWEWDLTTQRMDWSGGFWERLGYSDEDTKQINSAQAVMER 77

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
                 ++ +  +  +   R  + A  R+ T      + +           +  +    +
Sbjct: 78  IHPEDQDSIMDSIRNHLRTRQPLDACYRIQT---KAGDYVWTQIRADTLYGENNQPAVMS 134

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII--NREGIILSTNRAVSKLFGYP- 488
           G+  +  + +  +  +     +   I++A+SDGI     +R G     +    +L GY  
Sbjct: 135 GVNFDITELKRVEAALRESEARQVRIIQASSDGIWEWYSDRGGF--HFSHRCWELLGYDD 192

Query: 489 ------VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
                   +   K +   +        +  L + L+      +E   +  + E + +  R
Sbjct: 193 LDDVLTEGEDRLKIWRRHIFPQDLVKFDDALAQHLAGRDFFDVEYRVVCRSGEIRWVRGR 252

Query: 543 IIIKKLPFSSCYSLTMH--DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
                        ++    DI+E K+ + ++  AK+ AEK +  KS FL+ +SHE+RTPL
Sbjct: 253 GKAVFNESGKPVMMSGSNMDITEVKRAEERVLLAKEQAEKANQAKSAFLSSMSHELRTPL 312

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
            AI+G+++    +  G L   +       I ++G  +L ++ND+LD++KIESGKM +  E
Sbjct: 313 NAILGYTQ--LFEYDGNLSREQVTN-IREIRKAGEHLLQLINDVLDLAKIESGKMMVSLE 369

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFT 719
           PV +   + E  + VQ  A+   I +  + A+     ++ADL   KQ  LN+LSNAI + 
Sbjct: 370 PVLVSRVIKECFTFVQPQADALGIRLYATLADQEKTYVVADLVRFKQALLNLLSNAIKYN 429

Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
             GG++ +       +++ + VRDTG G+      +  +PF ++ +++    EG+G+GL 
Sbjct: 430 IVGGEVEVRLDVQPMDQLRITVRDTGRGIPADRQHEVFQPFNRL-SAENSNIEGSGVGLV 488

Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           + K +V+   G     S  A GT   I  P
Sbjct: 489 ITKQLVEMMHGNLDFSSAEAIGTSFWIDLP 518


>gi|163742074|ref|ZP_02149463.1| sensor histidine kinase/response regulator [Phaeobacter
           gallaeciensis 2.10]
 gi|161384795|gb|EDQ09175.1| sensor histidine kinase/response regulator [Phaeobacter
           gallaeciensis 2.10]
          Length = 764

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 109/454 (24%), Positives = 195/454 (42%), Gaps = 22/454 (4%)

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
           L+D    +      ++R      A L           A+       A Q      ++   
Sbjct: 3   LADRLTEERRARLAAERLLELKQAELSAANRKLGR-HALALTRQIGATQAEVATVRDENA 61

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
               D      K+E    +L   ++A  DG A  + +  ++  N A   LF    E    
Sbjct: 62  KVKSDLSTANEKVERAERRLWHSIQAFQDGFAFFDADSKLIGANTAYLDLFDGLEEVTPG 121

Query: 495 KPFTVFLEQ-------NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
             +   L+        NT      +    +S        +  +    +++ L L   + +
Sbjct: 122 VSYVRILQILTDEGLVNTGEQDPDHWRAQMSERWLSPSPEPVVVRMWDDRYLRL---LDQ 178

Query: 548 LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
                       DI+   Q + +L  A++ AE  +  KS FLA +SHEIRTP+  ++G +
Sbjct: 179 RGHGGDMVSLALDITSTVQYEEELQAARERAEAANRAKSAFLANMSHEIRTPMNGVVGMA 238

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
           E++ +       +     YAN I  SG  +L I+ND+LD SKIE+ K+ LH EP  L+ +
Sbjct: 239 ELLSDTNL----SDEQQLYANTIKNSGEALLVIINDVLDYSKIEAQKLELHPEPFDLERS 294

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG--- 723
           V E + L+Q  A +K + +   +   +P   + D   ++Q+  N++ NA+ FT  G    
Sbjct: 295 VHEVLMLLQPTARDKGLTLLLDYDLFLPTSFVGDPGRIRQVLTNLVGNAVKFTSEGHVAL 354

Query: 724 QII-ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
           QI  IS        + + + DTG+G+   +++     F Q+ + +  + EGTGLGL ++K
Sbjct: 355 QITGISNADDKICSIHVTIEDTGIGIPEEKVQDIFGEFNQVEDERNRQFEGTGLGLAISK 414

Query: 783 AMVDANMGKFYIFSTPAKGTL--IEIIFPLYDTS 814
            +++   G+ ++ S   KG+     +  PL + +
Sbjct: 415 RLIELMGGEIWVESQEGKGSCFGFRMELPLAEGA 448


>gi|255035320|ref|YP_003085941.1| PAS/PAC sensor signal transduction histidine kinase [Dyadobacter
           fermentans DSM 18053]
 gi|254948076|gb|ACT92776.1| PAS/PAC sensor signal transduction histidine kinase [Dyadobacter
           fermentans DSM 18053]
          Length = 643

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 88/557 (15%), Positives = 198/557 (35%), Gaps = 41/557 (7%)

Query: 279 NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF----- 333
           +  +Y  +  +  L ++ ++   +       +           + E              
Sbjct: 100 DQTRYWAETSYSPLFDDFQKHVGFCVLMRDITEKKQHQFQLLQSEERYRLMVEAIRDYSI 159

Query: 334 -FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
             +   G++   N     +  Y   + +      S    A  + D+   K +       +
Sbjct: 160 FMLDPEGHVITWNDGGTFVHGYAESEIL--NKHFSVFYSASDVIDDKPRKALQTASESGS 217

Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
                 R+        +      +     N   + +  + +  +  D   ++  +     
Sbjct: 218 YREEGWRV----KKDGSLFWANVVLTALYNDRNKLIGYSKVTRDLTDRLKSEDVLRQSEA 273

Query: 453 QLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
           +  S++E   D GI +++  G I+S N    ++ GY  +D++ K F++F  +        
Sbjct: 274 RYRSLVEQVGDYGIFMLDIRGRIISWNEGARRIKGYSADDVIGKYFSIFYPEEDILNGKP 333

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQE 567
               +         E+      K+       I+I  +  +            D++E K  
Sbjct: 334 AWE-LKVARATGKYEEEGWRLRKDGSRFWANIVITAVYDTEGRLSGFSKVTRDLTERKMN 392

Query: 568 KN--------------KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
           +               +LS         +     F A VSH+++ P+  +  F   + ++
Sbjct: 393 EQALQESSDRYKQLVDELSVTNSELSSVNRELEQFTAIVSHDLKEPVRTVRSFL-HLMDR 451

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
                              +   + D++++LL  S+I   K+ L  + + ++E + EAI 
Sbjct: 452 HVDQQNYDNLRLSIGKGILAAQRMHDLIDNLLHYSQI--SKVGLQRQKLRVEEVIGEAIQ 509

Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST-THT 732
            +     +    I+    + +P I  D   + Q+  N+++NA+ FT +G    ++  +  
Sbjct: 510 NLDDAVAQSGAKIQVE--SLVPFIYGDRVQLVQLFQNLVANALKFT-NGSTPEVTVKSWM 566

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
            N  V   V D G+G++   LEK  + F ++  +   +  G G+GL + K +V+ + G+ 
Sbjct: 567 ENGSVRFVVSDNGIGISPENLEKIFEIFRRLHFAN--QYPGHGVGLAVCKKVVERHRGRI 624

Query: 793 YIFSTPAKGTLIEIIFP 809
           +  S   KG    I+ P
Sbjct: 625 WAESAQGKGASFHILLP 641



 Score =  106 bits (265), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 45/447 (10%), Positives = 125/447 (27%), Gaps = 31/447 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + +D  G +   +       G     +       + D    DP  +  +L +       
Sbjct: 32  IFVLDETGRITACNAAASAITGYDDTDLECKPFFTIGDGQD-DPIKYRYELDQALKKKSL 90

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIV-HVNRVDNDPRALGKRLDKKF 204
               W ++        + +  P++     F    GF ++          +    + ++++
Sbjct: 91  VVEGWKLKKDQTRYWAETSYSPLFDD---FQKHVGFCVLMRDITEKKQHQFQLLQSEERY 147

Query: 205 SHLHEIKKGHSS--VEKEKYDIFSQQSPPPHLRMKNKVSSLTE--YYAHKDDVLKTEKYP 260
             + E  + +S   ++ E + I                        +    DV+  +   
Sbjct: 148 RLMVEAIRDYSIFMLDPEGHVITWNDGGTFVHGYAESEILNKHFSVFYSASDVIDDKPRK 207

Query: 261 LLTSEESSLPEQEDFHTI--NLNQYTKKQYFGTLQNNS----KESFEYLSHRNHPSLSAY 314
            L +   S   +E+   +  + + +        L N+       S       +       
Sbjct: 208 ALQTASESGSYREEGWRVKKDGSLFWANVVLTALYNDRNKLIGYSKVTRDLTDRLKSEDV 267

Query: 315 FDEGENLTPETVDKCPI--PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
             + E      V++      F +   G +   N     +  Y + D I     +      
Sbjct: 268 LRQSEARYRSLVEQVGDYGIFMLDIRGRIISWNEGARRIKGYSADDVIGKYFSI--FYPE 325

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
             + +      + + R+             ++ +     A   +     +        + 
Sbjct: 326 EDILNGKPAWELKVARATGK---YEEEGWRLRKDGSRFWA-NIVITAVYDTEGRLSGFSK 381

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
           +  +  + ++N++ ++    +   +++  S    + N E  + S NR + +       D+
Sbjct: 382 VTRDLTERKMNEQALQESSDRYKQLVDELS----VTNSE--LSSVNRELEQFTAIVSHDL 435

Query: 493 LR--KPFTVFLEQNTPSVMNHYLTEIL 517
               +    FL      V       + 
Sbjct: 436 KEPVRTVRSFLHLMDRHVDQQNYDNLR 462



 Score = 98.2 bits (243), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 35/275 (12%), Positives = 83/275 (30%), Gaps = 18/275 (6%)

Query: 322 TPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
                  C    FV    G +   N +   +T Y   D +E     +             
Sbjct: 21  YDLIFRSCSEGIFVLDETGRITACNAAASAITGYDDTD-LECKPFFTIGDGQDDPIKYRY 79

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
                L +                   +             + F +++    +  +  + 
Sbjct: 80  ELDQALKKKS------LVVEGWKLKKDQTRYWAETSYSPLFDDFQKHVGFCVLMRDITEK 133

Query: 441 RINKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
           + ++ ++     +   ++EA  D  I +++ EG +++ N   + + GY   +IL K F+V
Sbjct: 134 KQHQFQLLQSEERYRLMVEAIRDYSIFMLDPEGHVITWNDGGTFVHGYAESEILNKHFSV 193

Query: 500 FLEQNT--PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----C 553
           F   +          L          +  +      K+  L    +++  L         
Sbjct: 194 FYSASDVIDDKPRKALQTASESG---SYREEGWRVKKDGSLFWANVVLTALYNDRNKLIG 250

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
           YS    D+++  + ++ L  ++           D+
Sbjct: 251 YSKVTRDLTDRLKSEDVLRQSEARYRSLVEQVGDY 285



 Score = 68.5 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 42/382 (10%), Positives = 106/382 (27%), Gaps = 26/382 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKRQ-NTW 143
            + +D  G++   ++      G    +++        S    ID           +  ++
Sbjct: 159 IFMLDPEGHVITWNDGGTFVHGYAESEILNKHFSVFYSASDVIDDKPRKALQTASESGSY 218

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +      +G+  +  + L AL  Y+   +  G+    +            + ++ + +
Sbjct: 219 REEGWRVKKDGSLFWANVVLTAL--YNDRNKLIGYSK--VTRDLTDRLKSEDVLRQSEAR 274

Query: 204 FSHLHEIKKGH-SSVEKEKYDIFSQQSPPPHLR--MKNKVSS--LTEYYAHKDDVLKTEK 258
           +  L E    +   +   +  I S       ++    + V     + +Y  +D +     
Sbjct: 275 YRSLVEQVGDYGIFMLDIRGRIISWNEGARRIKGYSADDVIGKYFSIFYPEEDILNGKPA 334

Query: 259 YPLLTSEESSLPEQEDFH-TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA---- 313
           + L  +  +   E+E +    + +++        + +       +       +       
Sbjct: 335 WELKVARATGKYEEEGWRLRKDGSRFWANIVITAVYDTEGRLSGFSKVTRDLTERKMNEQ 394

Query: 314 YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG-GLSTLLDA 372
              E  +   + VD+  +      +  L   N      T   S D  E      S L   
Sbjct: 395 ALQESSDRYKQLVDELSVT-----NSELSSVNRELEQFTAIVSHDLKEPVRTVRSFLHLM 449

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
            +  D      + L        A                           Q        G
Sbjct: 450 DRHVDQQNYDNLRLSIGKGILAAQRMH----DLIDNLLHYSQISKVGLQRQKLRVEEVIG 505

Query: 433 IEPEDVDTRINKRKMEIEVMQL 454
              +++D  + +   +I+V  L
Sbjct: 506 EAIQNLDDAVAQSGAKIQVESL 527


>gi|171780120|ref|ZP_02921024.1| hypothetical protein STRINF_01908 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281468|gb|EDT46903.1| hypothetical protein STRINF_01908 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 450

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 85/378 (22%), Positives = 163/378 (43%), Gaps = 35/378 (9%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           R+ +  +  E  +L SIL   +DG+   +R G I   N+   K      E+ L       
Sbjct: 83  RLAQENLAQEKNRLASILSYMTDGVLATDRSGNITMINQTAQKQLNLEREEALGMNIVDI 142

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS----L 556
           L  ++    +  +         +T E +     +  + ++LRI        S +      
Sbjct: 143 LGDDSDYSYHDLV--------SKTPEIVLNRRDETGEFITLRIRFALNRRDSGFISGLIA 194

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            +HD +E ++E  +              +  F++ VSHE+RTPLT++  + E +     G
Sbjct: 195 VLHDTTEQEKEDCE--------------RRLFVSNVSHELRTPLTSVKSYLEAL---DEG 237

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV- 675
            L       +        N ++ +++DLL++S+I++  + L  E  +    ++  ++   
Sbjct: 238 ALKEDIAPSFIKVSLDETNRIIRMISDLLNLSRIDNQTVQLEVEMTNFTAFMTSILNRFD 297

Query: 676 ----QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
               Q     K+  I   +      +  D   + Q+  NIL+NAI ++P GG+I +S   
Sbjct: 298 QIKSQHTVAGKQYEIVRDYPIKSIWVEIDPDKMTQVLDNILNNAIKYSPDGGKITVSMKT 357

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
           T   ++I+ + D G+G+   +L      F ++  ++     G+GLGL +AK +V  + G 
Sbjct: 358 TET-QLIISISDEGLGIPKKDLPLIFDRFYRVDKARSRAQGGSGLGLAIAKEIVKQHKGF 416

Query: 792 FYIFSTPAKGTLIEIIFP 809
            +  ST  KG+   I+ P
Sbjct: 417 IWAQSTYGKGSTFTIVLP 434


>gi|167621563|ref|YP_001672071.1| PAS/PAC sensor hybrid histidine kinase [Caulobacter sp. K31]
 gi|167351686|gb|ABZ74412.1| PAS/PAC sensor hybrid histidine kinase [Caulobacter sp. K31]
          Length = 524

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 102/385 (26%), Positives = 175/385 (45%), Gaps = 17/385 (4%)

Query: 438 VDTRINKRKMEIE-VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI--LR 494
           +       + + E   +L  I+E    G   +     +LS N A+ ++ GY   ++  L 
Sbjct: 1   MARTREAAEPDAEVAERLARIIELLPAGAVHVRAG--VLSMNAAMEEVTGYARAELPTLE 58

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554
             F       +  ++ HYL +  +     T+E        E + +  R        S   
Sbjct: 59  AWFEKLYGDTSGKLIAHYLDQ-RAQGFPATVEGSIRRRDGEVRRIEFRAC----NDSVGE 113

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
              ++DI+E    +  L  AK  AE  +  KS+FLA +SHE+RTPLTAIIGF+E++  + 
Sbjct: 114 IWIVNDITERDLIERDLIAAKDRAEAGARSKSEFLANMSHELRTPLTAIIGFAELLAREG 173

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                 P+   +   I+ +   +  IVND+LD SK+E G + L  EP  L + V + ++L
Sbjct: 174 SLA---PQERHWLARIEDASKALHSIVNDVLDFSKLEEGAVELESEPFGLRKLVEDTVAL 230

Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHT 732
           +   A  K + +     + +   +  D   ++QI LN++ NA+ FT  GG  I +S    
Sbjct: 231 LADQAERKGVGLAIFVDDGLCDGLRGDTGRLRQILLNLICNAVKFTNHGGVTIRVSEDVG 290

Query: 733 SNE--EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
           +    +V   + DTG+G+ +  L++  + F Q   S      GTGLGL + + +V+   G
Sbjct: 291 AGGPPQVRFAISDTGIGIPDAALDQVFQRFVQADGSVSREFGGTGLGLAICRRLVELMGG 350

Query: 791 KFYIFSTPAKGTLIEIIFPLYDTSH 815
           +  + S    G+       L   +H
Sbjct: 351 EIGVESRVGSGSTFWFSVALAPAAH 375


>gi|227523373|ref|ZP_03953422.1| histidine kinase [Lactobacillus hilgardii ATCC 8290]
 gi|227089479|gb|EEI24791.1| histidine kinase [Lactobacillus hilgardii ATCC 8290]
          Length = 617

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 80/368 (21%), Positives = 160/368 (43%), Gaps = 35/368 (9%)

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
             +L S+L   +DG+   +R G ++  N   +          + K     L+      + 
Sbjct: 263 RRRLDSVLANMTDGVLATDRWGNVIIINETAASFLDLDENQAMGKSILDVLDIRKDYSLR 322

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLL---SLRIIIKKLPFSSCYSLTMHDISEWKQE 567
             L +          E I   S+ +  L+      +I ++  F S     + DI+E ++ 
Sbjct: 323 DLLEK--------PDELILDFSSDDHSLILHAHFSLIQRESGFISGLVCVLRDITEQQRI 374

Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI-EY 626
                            +  F++ VSHE+RTPLT++  + E + +   G   +P+   ++
Sbjct: 375 DQD--------------RKQFVSNVSHELRTPLTSVRSYIEALHD---GAWKDPKLAPKF 417

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN-----E 681
                   + ++ ++NDLL +S+++SG   +  E V+++E  +  ++   +        E
Sbjct: 418 LKVTQDETDRMIRMINDLLTLSRMDSGTQKMEVELVNINELFNYVLNRFDMILKKDEHPE 477

Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
           K   I+  F      +  D     Q+  N+++NAI ++P GG I     + +  +VIL V
Sbjct: 478 KMYTIKRYFTKRDLWVDLDTDRFTQVLDNLMNNAIKYSPDGGVITCRL-YETRNKVILSV 536

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            D G+G+   ++      F ++  ++  +  G+GLGL ++K +V+A  G+ +  S   KG
Sbjct: 537 SDQGLGIPRKDIPHIFDRFYRVDKARSRQQGGSGLGLAISKEVVEALHGQLWAESVEGKG 596

Query: 802 TLIEIIFP 809
           +   I  P
Sbjct: 597 STFYIALP 604


>gi|254467050|ref|ZP_05080461.1| sensor histidine kinase/response regulator [Rhodobacterales
           bacterium Y4I]
 gi|206687958|gb|EDZ48440.1| sensor histidine kinase/response regulator [Rhodobacterales
           bacterium Y4I]
          Length = 764

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 104/458 (22%), Positives = 195/458 (42%), Gaps = 20/458 (4%)

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
           L+D  + +      ++R      A L           A+         Q      ++   
Sbjct: 3   LADKLSEERRARLAAERLLELKQAELSAANRKLGR-HALALTKQIGQTQAEVATVRDENA 61

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
               D      K+E    +L   ++A  DG A  + +  ++  N A   +F    E    
Sbjct: 62  KVKSDLHTANEKIETAERRLWHSIQAFQDGFAFFDADSNLIGANTAYINIFDGLEEVAPG 121

Query: 495 KPFTVFLEQNTPSVMNH-------YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
             +   L+  T   + +           +++        +  +    +E+ L L   I +
Sbjct: 122 ISYMRILQLLTDEGLINTGGMAPNAWRAMMNERWLSPAPEPVVVQLWDERYLRL---IDQ 178

Query: 548 LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
                       DI+   + + +L  A+  AE  +  KS FLA +SHEIRTP+  ++G +
Sbjct: 179 RGHDGDMVTLALDITSTVRYEEELRAARARAEAANRAKSAFLANMSHEIRTPMNGVVGMA 238

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
           E++ +       +     YA+ I  SG  +L I+ND+LD SKIE+ K+ LH EP  L+  
Sbjct: 239 ELLCDTEL----DEEQRLYASTIKNSGEALLVIINDVLDYSKIEADKLELHPEPFDLERC 294

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QI 725
           + E + L+Q  A +K I +   +   +P R   D   ++Q+  N+  NA+ FT  G   +
Sbjct: 295 LHEVVMLLQPTARDKGIALLVDYDLFLPTRFTGDPGRIRQVLTNLAGNAVKFTKEGHVTL 354

Query: 726 IISTTHTSNEE---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
            ++   + +++   V + + DTG+G+   ++      F Q+ + +  + EGTGLGL ++K
Sbjct: 355 RVTGITSPDDKQCAVHVNIEDTGIGIPQEKISHIFGEFNQVEDERNRQFEGTGLGLAISK 414

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820
            +++   G+ ++ S   KG+      PL   + P   +
Sbjct: 415 RLIEMMGGEIWVDSEEGKGSCFGFRLPLPVEAGPEAAV 452


>gi|322643371|gb|EFY39935.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str. 531954]
          Length = 802

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 85/435 (19%), Positives = 178/435 (40%), Gaps = 17/435 (3%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L +          +L  +Q     +     I   +  +   +     ++ E
Sbjct: 81  EESRQRLSRLVQKLEEMRERDLKL-NVQLKDNIAQLNQEIADREKAEAELHETFEQLKVE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             +    + ++E +   L S L+A+ D +   N +      NRA+  L G   + ++   
Sbjct: 140 IKEREEAQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCY 554
                       +     ++   ++  T E+        +    +R +    ++      
Sbjct: 200 PEDVYSPEAAEKVIETDEKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGL 259

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+        +   E+ S  K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 260 MGFGRDITERKR-------YQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTD 312

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     +Y   I  S   + +I ND++D+ K+E  K+ L  +PV     +++  +L
Sbjct: 313 LTA----EQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFMADLENL 368

Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
             L A +K +         +P  ++ D   ++QI  N++SNA+ FT  G Q+ +   +  
Sbjct: 369 SGLQAQQKGLRFVLEPTLPLPHKVITDGTRLRQILWNLISNAVKFTQQG-QVTVRARYDE 427

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMGKF 792
            + +   V D+G+G+   E +K    + Q+ +S   +   GTG+GL +++ +     G  
Sbjct: 428 GDMLHFEVEDSGIGIPQDEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDI 487

Query: 793 YIFSTPAKGTLIEII 807
            + S P KG+   + 
Sbjct: 488 TVSSLPGKGSTFTLT 502



 Score = 40.8 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 27/183 (14%), Positives = 55/183 (30%), Gaps = 7/183 (3%)

Query: 36  TEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYL 95
            ++ K E   H++FEQ     + +E         S     F      + F  N D     
Sbjct: 120 ADREKAEAELHETFEQLKVEIKEREEAQIQLEQQSSFLRSFLDASPDLVFYRNEDKE--F 177

Query: 96  KEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN-TWYGKTTLWPIEG 154
              +  +    G    +++ ++  DV      +      + + R N +   +  L   +G
Sbjct: 178 SGCNRAMELLTGKSEKQLVHLKPEDVYSPEAAEKVIETDEKVFRHNVSLTYEQWLDYPDG 237

Query: 155 TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214
                  ++  +P Y R  +  G  GFG           +   +R  +  +         
Sbjct: 238 RKACF--EIRKVPYYDRVGKRHGLMGFG--RDITERKRYQDALERASRDKTTFISTISHE 293

Query: 215 SSV 217
              
Sbjct: 294 LRT 296


>gi|229590396|ref|YP_002872515.1| putative aerobic respiration sensor-response protein; histidine
           protein kinase/phosphatase, sensor for arcA [Pseudomonas
           fluorescens SBW25]
 gi|229362262|emb|CAY49164.1| putative aerobic respiration sensor-response protein; histidine
           protein kinase/phosphatase, sensor for arcA [Pseudomonas
           fluorescens SBW25]
          Length = 771

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 124/626 (19%), Positives = 239/626 (38%), Gaps = 22/626 (3%)

Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD 252
                +        L  +    S V     +  + ++     R+    S +   +    +
Sbjct: 6   ADLPLRGKALVVISLPLVVLLLSLVLIYTTERQTARAEEDVRRVLRVQSDIRAVHTLLAE 65

Query: 253 VLKTEKYPLLTSEESSLPE--QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310
              + +  LLT  E  LP             Q                +   L +     
Sbjct: 66  AAASVRGYLLTRREDFLPGYLNAKPQIAAALQRLDGNVRDQRVREQLVAIRPLINSKVEG 125

Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
           L     +    T    +       +        AN   L  +                LL
Sbjct: 126 LEDMLSDPTTSTATMTEILVSNKHILDALRQHIANMLMLEDSLLAERTAAAAETRQRLLL 185

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
                +       ++        I   AR+  +Q N +       +  +           
Sbjct: 186 STWLAAICGLFGAIVAVLFLSKGIV--ARVQNVQGNAQRLALGQPLLPQPPEHDEIGQLG 243

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPV 489
             +    +     +R +     +L  I++   D GI  ++  G + S N    ++ GY  
Sbjct: 244 TRLVEAGLLLAERERALRENEERLRLIIDGVKDYGIFALDTAGHVTSWNAGAERIKGYTE 303

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
           ++I+ + F+VF               +          +      ++       ++I    
Sbjct: 304 QEIIGQHFSVFYLPQECPQHPAM--ALDEATRHGHYMEEGWRLRQDGTRFWASVVITAQF 361

Query: 550 FS----SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
            +      +S    DI++ +  +  L +A++ AE+ S  KS+FL+R+SHE+RTPL +I+G
Sbjct: 362 DATGALRGFSKITRDITDRRAAEMALGNAREEAERASRAKSEFLSRMSHELRTPLNSILG 421

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
           F++++     G         +  +I R+G  +L ++N++LDI+KIE+G++ L+ EP+ L 
Sbjct: 422 FAQLLDMDSAGG-----QKAHVGHILRAGQHLLTLINEVLDIAKIEAGRLPLNIEPIRLA 476

Query: 666 EAVSEAISLVQLYANEKRILIR--TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
            A+ EA++LV   A +  I ++   + A +I  I AD + + Q+ LN+LSNAI +    G
Sbjct: 477 GALQEALALVSPMAADAGIQLQPLPALAADIG-IAADPQRLTQVLLNLLSNAIKYNQPQG 535

Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
           Q+ I         + + V DTG G+   +L +  KPF ++        EG+GLGL L+K+
Sbjct: 536 QVSIEVKVE-GPRIGVAVCDTGKGIPADKLGQLFKPFERL--GADPNVEGSGLGLALSKS 592

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFP 809
           +++   G+  + +    G+   +  P
Sbjct: 593 LLEKMDGQLSVHTQQGIGSRFTLELP 618



 Score = 55.0 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/256 (10%), Positives = 62/256 (24%), Gaps = 14/256 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ-NTWY 144
            + +D  G++   +    +  G    ++IG              +  +      +   + 
Sbjct: 279 IFALDTAGHVTSWNAGAERIKGYTEQEIIGQHFSVFYLPQECPQHPAMALDEATRHGHYM 338

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR-ALGKRLDKK 203
            +      +GT  +  + + A   +       GF    I            ALG   ++ 
Sbjct: 339 EEGWRLRQDGTRFWASVVITAQ--FDATGALRGFSK--ITRDITDRRAAEMALGNAREEA 394

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV------LKTE 257
                   +  S +  E     +       L   +       +  H          L  E
Sbjct: 395 ERASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSAGGQKAHVGHILRAGQHLLTLINE 454

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
              +   E   LP   +   +             +  ++    + L         A   +
Sbjct: 455 VLDIAKIEAGRLPLNIEPIRLAGALQEALALVSPMAADAGIQLQPLPALAADIGIAADPQ 514

Query: 318 GENLTPETVDKCPIPF 333
              LT   ++      
Sbjct: 515 --RLTQVLLNLLSNAI 528


>gi|197265807|ref|ZP_03165881.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|197244062|gb|EDY26682.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
          Length = 778

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 84/435 (19%), Positives = 177/435 (40%), Gaps = 17/435 (3%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L +          +L  +Q     +     I   +  +         ++ E
Sbjct: 81  EESRQRLSRLVQKLEEMRERDLKL-NVQLKDNIAQLNQEIADREKAEAELQETFEQLKVE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             +    + ++E +   L S L+A+ D +   N +      NRA+  L G   + ++   
Sbjct: 140 IKEREEAQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCY 554
                       +     ++   ++  T E+        +    +R +    ++      
Sbjct: 200 PEDVYSPEAAEKVIETDEKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGL 259

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+        +   E+ S  K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 260 MGFGRDITERKR-------YQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTD 312

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     +Y   I  S   + +I ND++D+ K+E  K+ L  +P+     +++  +L
Sbjct: 313 LTA----EQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPIDFTSFMADLENL 368

Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
             L A +K +         +P  ++ D   ++QI  N++SNA+ FT  G Q+ +   +  
Sbjct: 369 SGLQAQQKGLRFVLEPTLPLPHKVITDGTRLRQILWNLISNAVKFTQQG-QVTVRARYDE 427

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMGKF 792
            + +   V D+G+G+   E +K    + Q+ +S   +   GTG+GL +++ +     G  
Sbjct: 428 GDMLHFEVEDSGIGIPQDEQDKIFAMYYQVKDSNGGKPATGTGIGLAVSRRLAKNMGGDI 487

Query: 793 YIFSTPAKGTLIEII 807
            + S P KG+   + 
Sbjct: 488 TVSSLPGKGSTFTLT 502


>gi|161506109|ref|YP_001573221.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. arizonae serovar 62:z4,z23:-- str.
           RSK2980]
 gi|160867456|gb|ABX24079.1| hypothetical protein SARI_04296 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 788

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 84/435 (19%), Positives = 178/435 (40%), Gaps = 17/435 (3%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L +          +L  +Q     +     I   +  +   +     ++ E
Sbjct: 91  EESRQRLSRLVQKLEEMRERDLKL-NVQLKDNIAQLNQEIADREKAEAELHETFEQLKVE 149

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             +    + ++E +   L S L+A+ D +   N +      NRA+  L G   + ++   
Sbjct: 150 IKEREEAQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 209

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCY 554
                       +     ++   ++  T E+        +    +R +    ++      
Sbjct: 210 PEDVYSPEAAEKVIETDEKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGL 269

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+        +   E+ S  K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 270 MGFGRDITERKR-------YQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTD 322

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     +Y   I  S   + +I ND++D+ K+E  K+ L  +P+     +++  +L
Sbjct: 323 LTA----EQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPIDFTSFMADLENL 378

Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
             L A +K +         +P  ++ D   ++QI  N++SNA+ FT  G Q+ +   +  
Sbjct: 379 SGLQAQQKGLRFVLEPTLPLPHKVITDGTRLRQILWNLISNAVKFTQQG-QVTVRARYDE 437

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMGKF 792
            + +   V D+G+G+   E +K    + Q+ +S   +   GTG+GL +++ +     G  
Sbjct: 438 GDMLHFEVEDSGIGIPQDEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDI 497

Query: 793 YIFSTPAKGTLIEII 807
            + S P KG+   + 
Sbjct: 498 TVSSLPGKGSTFTLT 512



 Score = 40.8 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 27/183 (14%), Positives = 55/183 (30%), Gaps = 7/183 (3%)

Query: 36  TEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYL 95
            ++ K E   H++FEQ     + +E         S     F      + F  N D     
Sbjct: 130 ADREKAEAELHETFEQLKVEIKEREEAQIQLEQQSSFLRSFLDASPDLVFYRNEDKE--F 187

Query: 96  KEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN-TWYGKTTLWPIEG 154
              +  +    G    +++ ++  DV      +      + + R N +   +  L   +G
Sbjct: 188 SGCNRAMELLTGKSEKQLVHLKPEDVYSPEAAEKVIETDEKVFRHNVSLTYEQWLDYPDG 247

Query: 155 TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214
                  ++  +P Y R  +  G  GFG           +   +R  +  +         
Sbjct: 248 RKACF--EIRKVPYYDRVGKRHGLMGFG--RDITERKRYQDALERASRDKTTFISTISHE 303

Query: 215 SSV 217
              
Sbjct: 304 LRT 306


>gi|262196436|ref|YP_003267645.1| signal transduction histidine kinase with CheB and CheR activity
            [Haliangium ochraceum DSM 14365]
 gi|262079783|gb|ACY15752.1| signal transduction histidine kinase with CheB and CheR activity
            [Haliangium ochraceum DSM 14365]
          Length = 1348

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 102/640 (15%), Positives = 224/640 (35%), Gaps = 41/640 (6%)

Query: 187  NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY 246
              +     ++   ++  ++   +      SV + +     +          ++V+     
Sbjct: 613  ADLGTGEESVRLVVEPLYNERAKTMNFLISVTRHETLPEPESEADDTQIDLDQVTQERIR 672

Query: 247  YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
                +  L  E   L  + E      E+    N       +   +         E L   
Sbjct: 673  TLEGELRLSRE--NLQATIEELETSNEELQASNEELVASNEELQSTNEELHSVNEELYTV 730

Query: 307  NHPSLS--AYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIA 363
            N           E  N     +    +   F+ +   +     +          D     
Sbjct: 731  NAEHQKHIVEITEINNDLDNLLHSIEVGVVFLDAELRIRKFTSAIAAAFHLLPQDIGRQF 790

Query: 364  GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
               +  ++ P L  +           +R  +  S     ++                   
Sbjct: 791  DNFAHNIEYPALMRDITAVRAGETTIEREVVNRSGDFFFLR-------------ILPYRS 837

Query: 424  FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
                        +    + ++  +     QL  I+ +++D I   + +G + + N    +
Sbjct: 838  DNTITGVVLTLIDIDALKRSEANVR----QLSDIVTSSTDAITAADMQGRLTAWNEGAQQ 893

Query: 484  LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
            L+GY  ++ L       +     S    ++  +   +  Q  +  T+   K+   + + I
Sbjct: 894  LYGYTADEALGMHLNTMILPEYQSENRSFVERVSRGE--QIADVETVRLRKDGHKVEISI 951

Query: 544  IIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
             +  L       +       DIS  K+ +       +   +    +  FLA +SHE+R P
Sbjct: 952  SLSPLRDVHGDIVGVSSIARDISRRKRAE-------RQVRRAIEQRDHFLATLSHELRNP 1004

Query: 600  LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
            L  ++  + +++++   P  +       + I+R    +  +++DLLD+S++   ++ +  
Sbjct: 1005 LMGLLTATHILRDEDMQPAAH---RRALDLIERQSQQMARLLDDLLDVSRMRRDRIEMDK 1061

Query: 660  EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719
              + + +AV  A+  V   A +  + +          + AD   ++Q+A N+L+NAI +T
Sbjct: 1062 ALIDMRKAVRPALEAVSGRAQDAGVTLAAEMPEEPVWVYADRTRLQQVAANLLANAIKYT 1121

Query: 720  PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
            P+G +I +S     +   +L VRD GVG+     E   +PF Q     +    G GLGL 
Sbjct: 1122 PTGKRIWVSIVPQDD-VALLEVRDEGVGIATELQESIFEPFMQSEEPPRGWEGGMGLGLA 1180

Query: 780  LAKAMVDANMGKFYIFST-PAKGTLIEIIFPLYDTSHPHD 818
            L +++  A+ G   + S    +G+      P+ DT+ P +
Sbjct: 1181 LVRSIALAHEGSLEVSSEGRDRGSTFTFRIPISDTA-PEE 1219



 Score = 65.4 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 40/364 (10%), Positives = 100/364 (27%), Gaps = 13/364 (3%)

Query: 90   DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG-KTT 148
            D  G L   +E   +  G  A + +GM L  +    +   N    + + R       +T 
Sbjct: 879  DMQGRLTAWNEGAQQLYGYTADEALGMHLNTMILPEYQSENRSFVERVSRGEQIADVETV 938

Query: 149  LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                +G  + + I L+  P+   + +  G     I              +R  ++  H  
Sbjct: 939  RLRKDGHKVEISISLS--PLRDVHGDIVGVS--SIARDISRRKRAERQVRRAIEQRDHFL 994

Query: 209  EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
                             +       ++      +L         + +     L  S    
Sbjct: 995  ATLSHELRNPLMGLLTATHILRDEDMQPAAHRRALDLIERQSQQMARLLDDLLDVSRMRR 1054

Query: 269  LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
               + D   I++ +   +     +   ++++   L+          + +   L     + 
Sbjct: 1055 DRIEMDKALIDM-RKAVRPALEAVSGRAQDAGVTLAAEMPEEPVWVYADRTRLQQVAANL 1113

Query: 329  CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIA--GGLSTLLDAPKLSDNNAIKPVML 386
                      G        ++ +     V  +E+   G          + +         
Sbjct: 1114 LANAIKYTPTGK-----RIWVSIVPQDDVALLEVRDEGVGIATELQESIFEPFMQSEEPP 1168

Query: 387  YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
               +       A + +I    E SL ++    ++ + F   +P +   PE++        
Sbjct: 1169 RGWEGGMGLGLALVRSIALAHEGSLEVSSEGRDRGSTFTFRIPISDTAPEELPQSDTGEI 1228

Query: 447  MEIE 450
            ++  
Sbjct: 1229 LKQR 1232


>gi|167994521|ref|ZP_02575612.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|205327619|gb|EDZ14383.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|261248493|emb|CBG26330.1| aerobic respiration control sensor protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. D23580]
 gi|267995527|gb|ACY90412.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           14028S]
 gi|301159877|emb|CBW19396.1| aerobic respiration control sensor protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. SL1344]
 gi|323131688|gb|ADX19118.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Typhimurium str. 4/74]
 gi|332990186|gb|AEF09169.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Typhimurium str. UK-1]
          Length = 778

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 84/435 (19%), Positives = 177/435 (40%), Gaps = 17/435 (3%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L +          +L  +Q     +     I   +  +         ++ E
Sbjct: 81  EESRQRLSRLVQKLEEMRERDLKL-NVQLKDNIAQLNQEIADREKAEAELQETFEQLKVE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             +    + ++E +   L S L+A+ D +   N +      NRA+  L G   + ++   
Sbjct: 140 IKEREEAQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCY 554
                       +     ++   ++  T E+        +    +R +    ++      
Sbjct: 200 PEDVYSPEAAEKVIETDEKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGL 259

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+        +   E+ S  K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 260 MGFGRDITERKR-------YQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTD 312

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     +Y   I  S   + +I ND++D+ K+E  K+ L  +P+     +++  +L
Sbjct: 313 LTA----EQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPIDFTSFMADLENL 368

Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
             L A +K +         +P  ++ D   ++QI  N++SNA+ FT  G Q+ +   +  
Sbjct: 369 SGLQAQQKGLRFVLEPTLPLPHKVITDGTRLRQILWNLISNAVKFTQQG-QVTVRARYDE 427

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMGKF 792
            + +   V D+G+G+   E +K    + Q+ +S   +   GTG+GL +++ +     G  
Sbjct: 428 GDMLHFEVEDSGIGIPQDEQDKIFAMYYQVKDSNGGKPATGTGIGLAVSRRLAKNMGGDI 487

Query: 793 YIFSTPAKGTLIEII 807
            + S P KG+   + 
Sbjct: 488 TVSSLPGKGSTFTLT 502


>gi|258540992|ref|YP_003175491.1| two component sensor transduction histidine kinase [Lactobacillus
           rhamnosus Lc 705]
 gi|257152668|emb|CAR91640.1| Two component sensor transduction histidine kinase [Lactobacillus
           rhamnosus Lc 705]
          Length = 636

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 84/383 (21%), Positives = 165/383 (43%), Gaps = 48/383 (12%)

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
             +L S+L   +DG+   +R G ++  N+          ED++       L       + 
Sbjct: 264 RRRLDSVLAHMTDGVIATDRRGNVIIINQTALSFLNTKNEDVIGVSILKLLNIAKDYTLR 323

Query: 511 HYLTEILSL--DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568
             L     L  D  + L+   +        +   +I ++  F S     +HD++E ++  
Sbjct: 324 DLLEHQTELLLDFSEQLDHDLILR------VDFSLIQRETGFISGLVAVLHDVTEQQKI- 376

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI-EYA 627
                           + +F++ VSHE+RTPLT++  + E + +   G   +P+   ++ 
Sbjct: 377 -------------DRDRKEFVSNVSHELRTPLTSVRSYIEALSD---GAWKDPKLAPQFL 420

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV------------ 675
           N      + ++ ++NDLL +S+++SG    + E V+L+E  +  +               
Sbjct: 421 NVTQEETDRMIRMINDLLSLSRLDSGTSKFNLETVNLNEFFNYVLDRFDMMLKTDNEHTG 480

Query: 676 ---------QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726
                    Q    +KR  I+    +    +  D     Q+  NI++NAI ++P GG I 
Sbjct: 481 EARTAQPLPQPDGQKKRYSIKREITHEDLWVEIDTDKFMQVIDNIMNNAIKYSPDGGVIT 540

Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
                 +++ VIL + D G+G+   +L K    F ++  ++  +  GTGLGL ++K +V+
Sbjct: 541 ARL-FQTHDHVILSISDQGLGIPRQDLGKIFDRFYRVDKARSRKQGGTGLGLAISKEVVE 599

Query: 787 ANMGKFYIFSTPAKGTLIEIIFP 809
           A  G+ ++ S   +G+   I  P
Sbjct: 600 ALHGRIWVDSQEGRGSTFYISLP 622


>gi|152972133|ref|YP_001337279.1| aerobic respiration control sensor protein ArcB [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|238896716|ref|YP_002921461.1| aerobic respiration control sensor protein ArcB [Klebsiella
           pneumoniae NTUH-K2044]
 gi|150956982|gb|ABR79012.1| aerobic respiration sensor-response protein; histidine protein
           kinase/phosphatase, sensor for arcA [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|238549043|dbj|BAH65394.1| aerobic respiration sensor-response protein [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
          Length = 779

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 86/435 (19%), Positives = 178/435 (40%), Gaps = 16/435 (3%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L            +L  +Q     +     I   +  +         ++ E
Sbjct: 81  EESRQRLSRLVDKLEEMRERDLKL-NVQLKDNIAQLNQEIGEREKAEAERETTLEQLKIE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             +    + ++E +   L S L+A+ D +   N +      NRA+  L G   + ++   
Sbjct: 140 MKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLIHLK 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCY 554
                 +     +     ++   ++  T E+        +    +R +    ++      
Sbjct: 200 PQDVYSEEAAEKVLETDEKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRRGL 259

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+        +   E+ S  K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 260 MGFGRDITERKR-------YQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE 312

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     +Y   I  S   + +I ND++D+ K+E  K+ L  +PV     +++  +L
Sbjct: 313 LTS----EQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENL 368

Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
             L A +K +      +  +P  ++ D   ++QI  N++SNA+ FTP GG + +   +  
Sbjct: 369 SGLQAQQKGLRFVLEPSLPLPHKVITDGTRLRQILWNLISNAVKFTPQGGGVNVRVRYDE 428

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMGKF 792
            + +   V D+G+G+   E +K    + Q+ +S   +   GTG+GL +++ +     G  
Sbjct: 429 GDILHFEVEDSGIGIPEAEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLARNMGGDI 488

Query: 793 YIFSTPAKGTLIEII 807
            + S P KG    + 
Sbjct: 489 SVTSQPGKGATFTLT 503



 Score = 44.2 bits (103), Expect = 0.095,   Method: Composition-based stats.
 Identities = 15/161 (9%), Positives = 38/161 (23%), Gaps = 8/161 (4%)

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIE 361
           +  +         ++  +     +D  P   F  +        N +  LLT       I 
Sbjct: 138 IEMKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLI- 196

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                  L      S+  A K +           +      + +                
Sbjct: 197 ------HLKPQDVYSEEAAEKVLETDEKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYY 250

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
           ++  +     G   +  + +  +  +E       + +   S
Sbjct: 251 DRVGKRRGLMGFGRDITERKRYQDALERASRDKTTFISTIS 291


>gi|319936949|ref|ZP_08011359.1| sensor protein [Coprobacillus sp. 29_1]
 gi|319807885|gb|EFW04464.1| sensor protein [Coprobacillus sp. 29_1]
          Length = 908

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 96/443 (21%), Positives = 189/443 (42%), Gaps = 26/443 (5%)

Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP--ENMPQNGIEPEDVDTR---INK 444
                      + I    E+     + P  +         +   G       +      +
Sbjct: 187 QGRTSPCPFCTNHILKEDESYNWEFYNPTLERTFMIKNRQINWEGHRTRIELSHDMYSAE 246

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREG--IILSTNRAVSKLFGYPVEDILR--KPFTVF 500
            K+  +  +  +IL++   G+A ++      IL  N    +L GY  E      +    +
Sbjct: 247 YKLSKKDQEREAILKSIPGGLARLDTRDFSTILWYNEKFLELIGYTAEQFENELQSQCRY 306

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSL 556
           ++++           +         E        EE++L++ +       S      Y  
Sbjct: 307 IQEDDLKRALVIAQTLTKTGDNAVFEVKMNRRDGEERILTVTLCYLSAEDSWDGIPSYYS 366

Query: 557 TMHDISEWKQEKNKLSHAKKIAEK----ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
              D++E ++E+ +   A + A +     +S K+DFL+ +SH+IRTP+ AI+G + + + 
Sbjct: 367 VGLDVTEARREEERQRQALEDAYQIAKIANSAKTDFLSSMSHDIRTPMNAIVGMASIAQA 426

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
               P    +  +  + I  S   +L ++N++LD+SKIESGK++L  E V+L E + +  
Sbjct: 427 HINFP---EKVSDCLHKIKISSRHLLSLINEVLDMSKIESGKIDLMLEDVNLPELIDDVS 483

Query: 673 SLVQLYANEKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT- 730
            + +   +EK+             +++AD   +KQI +N++SNA+ +TP GGQI +    
Sbjct: 484 DMCRALIDEKQQDFSIVIGRIKHEKVVADGDRLKQIFMNLISNAVKYTPRGGQISLVINE 543

Query: 731 ----HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
                        +  D G+GM+   L    +PF +  +++  + +GTGLG+ + + +V+
Sbjct: 544 LDSLILDKGRFEFKFYDNGIGMSEDFLPHIFEPFSRAEDTRINKIQGTGLGMAITENIVN 603

Query: 787 ANMGKFYIFSTPAKGTLIEIIFP 809
              G   + S   KGT+  +  P
Sbjct: 604 MMNGTIEVESQLGKGTIFTVSIP 626



 Score = 40.4 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/117 (11%), Positives = 37/117 (31%), Gaps = 3/117 (2%)

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
           +++    I+  N    +L G   E+           ++   +    +  + +       +
Sbjct: 23  LLDESLSIIWANDYFYQLLGLKREEKYNLKDLYNHLEDYEKMKASLMDAVKNNKQMLEYD 82

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSCYSLT---MHDISEWKQEKNKLSHAKKIAEK 580
                +  +   + + + I K       S+    + DI   K+   +L   +K   +
Sbjct: 83  TCLSINNGQSIWMRMTVTIIKTQEKVEISIVYTQIDDIMHEKETLYQLKEERKRNFE 139


>gi|319781457|ref|YP_004140933.1| PAS sensor protein [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317167345|gb|ADV10883.1| PAS sensor protein [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 763

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 97/417 (23%), Positives = 176/417 (42%), Gaps = 17/417 (4%)

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
             ++ +     E       +        E         +M+    +   +++A  D +  
Sbjct: 81  GLAMHLRARRSEHRTAALLDETTARSRAEIETLADRMWEMQESDERFRGLIDALGDLVIH 140

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
            +R+G I+  N+  + L      D+  K            V           +   + + 
Sbjct: 141 RDRDGYIVYANKVFADLVEIDQRDLAGKTLAEL----GIEVGMVPDAAFSDHECLSSTDV 196

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYS--LTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
                + +     + + + +   S   S      DI+  K+ ++ L  A++ AE  S  K
Sbjct: 197 SISTPSGQRWFSWIELSV-RDKDSGAVSHRAIARDITARKRAESSLITARERAEYASQAK 255

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
           S FLA VSHEIRTP+  I+G + ++ +    P        Y   +  S + +L ++ DLL
Sbjct: 256 SRFLATVSHEIRTPMNGIMGMARLLADTSLSP----EQQTYVGAVSTSASALLALIEDLL 311

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSV 704
           D SKIE+G+ +   +P+S+ E     I L+   A  K I +      ++P+ I AD   V
Sbjct: 312 DYSKIEAGRFDPEPQPMSVREIADNIIELLAARAFAKDIGLGCHVEPDVPQLITADPGKV 371

Query: 705 KQIALNILSNAIHFTPSGGQIIISTTH---TSNEEVILRVRDTGVGMTNYELEKAMKPFG 761
           +Q+ LN++ NAI FT SGG +++S       +++ +   + DTG G+ + +LE+  + F 
Sbjct: 372 RQVLLNLIGNAIKFTDSGG-VLVSIARARTETSDRICFTIADTGPGLHDADLERIFEEFE 430

Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL-YDTSHPH 817
           Q   +      G GLGL +++ +V A  G   + S   +G+      P    T  P 
Sbjct: 431 QADGTSTRTHGGAGLGLAISRRLVAAMGGTISVSSRLGQGSEFVFEVPATAATEAPQ 487



 Score = 48.9 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/242 (11%), Positives = 69/242 (28%), Gaps = 16/242 (6%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D  GY+   ++     +      + G  L ++   + + P+    D      +    +  
Sbjct: 142 DRDGYIVYANKVFADLVEIDQRDLAGKTLAELGIEVGMVPDAAFSD--HECLSSTDVSIS 199

Query: 150 WPIEGTNLYVPIDLAALPIYSRN-REFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
            P  G   +  I+L+   +  ++    S      I           +      ++  +  
Sbjct: 200 TP-SGQRWFSWIELS---VRDKDSGAVSHR---AIARDITARKRAESSLITARERAEYAS 252

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           + K    +    +              + +   SL+         + T    LL   E  
Sbjct: 253 QAKSRFLATVSHEIRTPMNGIMGMARLLADT--SLSPEQQTYVGAVSTSASALLALIEDL 310

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
           L    D+  I   ++  +    +++  +    E L+ R            E   P+ +  
Sbjct: 311 L----DYSKIEAGRFDPEPQPMSVREIADNIIELLAARAFAKDIGLGCHVEPDVPQLITA 366

Query: 329 CP 330
            P
Sbjct: 367 DP 368



 Score = 39.2 bits (90), Expect = 3.0,   Method: Composition-based stats.
 Identities = 23/258 (8%), Positives = 53/258 (20%), Gaps = 29/258 (11%)

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
           D   + L                            +      +    AH           
Sbjct: 14  DDVDAVLPPASTRRFVAAPPLVPEPEFSRREGLSFLTFVAIVVMAGLAHLTGAPMFISVA 73

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
           LL +  + L                +     L + +              +    +  E 
Sbjct: 74  LLATGLAGLAMHLRARRS-------EHRTAALLDETTARSRAEIETLADRMWEMQESDER 126

Query: 321 LTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDD----IEIAGGLSTLLDAPKL 375
                +D            G + YAN  F  L +    D     +   G    ++     
Sbjct: 127 -FRGLIDALGDLVIHRDRDGYIVYANKVFADLVEIDQRDLAGKTLAELGIEVGMVPDAAF 185

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
           SD+  +    +  S  +                     ++I     ++    +    I  
Sbjct: 186 SDHECLSSTDVSISTPS----------------GQRWFSWIELSVRDKDSGAVSHRAIAR 229

Query: 436 EDVDTRINKRKMEIEVMQ 453
           +    +  +  +     +
Sbjct: 230 DITARKRAESSLITARER 247


>gi|261253840|ref|ZP_05946413.1| aerobic respiration control sensor protein ArcB [Vibrio orientalis
           CIP 102891]
 gi|260937231|gb|EEX93220.1| aerobic respiration control sensor protein ArcB [Vibrio orientalis
           CIP 102891]
          Length = 783

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 89/407 (21%), Positives = 174/407 (42%), Gaps = 19/407 (4%)

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
               +         +E E       + ++      L S ++A+ D I   N EG+    N
Sbjct: 122 RIKAEEAREEAMKDLENEVYQREKTQVELAERTALLRSFIDASPDLIYYRNAEGVFSGCN 181

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
           RA+ +L G     ++         +     +     ++ S +   T E+           
Sbjct: 182 RAMEELTGKKESQLVGLTPWDVYSKEVAQQIVDTDQKVFSDNQALTYEQWLEYPDGRRNY 241

Query: 539 LSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
             LR +                 DI+E K+ +  L       EK S  K+ F++ +SHE+
Sbjct: 242 FELRKVPFYSKDGRHLGLVGFGRDITERKRHEESL-------EKASRDKTTFISTISHEL 294

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTPL  I+G S ++ + +           +   I+ S   + +I ND++D+ K +  K+ 
Sbjct: 295 RTPLNGIVGLSRMLLDTQM----TQEQRSHMQTINVSAITLGNIFNDIIDMDKFDRRKLE 350

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNA 715
           L    ++ +E V+E  S+  L A++K +       +++P  I  D   ++Q+  N++SNA
Sbjct: 351 LFPSALNFEEFVAEMESISALMASQKGLRFDLERLSDLPTGIEVDATRLRQVLWNLISNA 410

Query: 716 IHFTPSGGQI-IISTTH-TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGE 772
           + FT  GG +  +S+     +  +I+ + D+G+G+   EL+K    + Q+ + +      
Sbjct: 411 MKFTKEGGVVMTVSSEVIDEHAHIIMEIEDSGIGIPEAELDKIFAMYYQVKSGKDNLHAV 470

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF--PLYDTSHPH 817
           GTG+GL ++K +++   G   + S    G+   +    PL + + P 
Sbjct: 471 GTGIGLAVSKQLINMMDGDITVSSEEGFGSTFTVTIRVPLIEVAVPQ 517



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/129 (12%), Positives = 36/129 (27%), Gaps = 5/129 (3%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTT 148
           +A G     +  + +  G    +++G+   DV          +    +         +  
Sbjct: 172 NAEGVFSGCNRAMEELTGKKESQLVGLTPWDVYSKEVAQQIVDTDQKVFSDNQALTYEQW 231

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           L   +G       +L  +P YS++    G  GFG               ++  +  +   
Sbjct: 232 LEYPDGR--RNYFELRKVPFYSKDGRHLGLVGFG--RDITERKRHEESLEKASRDKTTFI 287

Query: 209 EIKKGHSSV 217
                    
Sbjct: 288 STISHELRT 296


>gi|56415257|ref|YP_152332.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|197364187|ref|YP_002143824.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
 gi|56129514|gb|AAV79020.1| aerobic respiration control sensor protein [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|197095664|emb|CAR61232.1| aerobic respiration control sensor protein [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
          Length = 778

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 85/435 (19%), Positives = 177/435 (40%), Gaps = 17/435 (3%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L +          +L  +Q     +     I   +  +         ++ E
Sbjct: 81  EESRQRLSRLVQKLEEMRERDLKL-NVQLKDNIAQLNQEIADREKAEAELQETFEQLKVE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             +    + ++E +   L S L+A+ D +   N +      NRA+  L G   + ++   
Sbjct: 140 IKEREEAQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCY 554
                       +     ++   ++  T E+        +    +R +    ++      
Sbjct: 200 PEDVYSPEAAEKVIETDEKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGL 259

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+        +   E+ S  K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 260 MGFGRDITERKR-------YQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTD 312

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     +Y   I  S   + +I ND++D+ K+E  K+ L  +PV     +++  +L
Sbjct: 313 LTA----EQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFMADLENL 368

Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
             L A +K +         +P  ++ D   ++QI  N++SNA+ FT  G Q+ +   +  
Sbjct: 369 SGLQAQQKGLRFVLEPTLPLPHKVITDGTRLRQILWNLISNAVKFTQQG-QVTVRARYDE 427

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMGKF 792
            + +   V D+G+G+   E +K    + Q+ +S   +   GTG+GL +++ +     G  
Sbjct: 428 GDMLHFEVEDSGIGIPQDEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDI 487

Query: 793 YIFSTPAKGTLIEII 807
            + S P KG+   + 
Sbjct: 488 TVSSLPGKGSTFTLT 502


>gi|47097090|ref|ZP_00234660.1| sensor histidine kinase ResE [Listeria monocytogenes str. 1/2a
           F6854]
 gi|224498603|ref|ZP_03666952.1| sensor protein ResE [Listeria monocytogenes Finland 1988]
 gi|254827168|ref|ZP_05231855.1| sensor histidine kinase ResE [Listeria monocytogenes FSL N3-165]
 gi|254831452|ref|ZP_05236107.1| sensor protein ResE [Listeria monocytogenes 10403S]
 gi|254899356|ref|ZP_05259280.1| sensor protein ResE [Listeria monocytogenes J0161]
 gi|254912505|ref|ZP_05262517.1| sensor histidine kinase ResE [Listeria monocytogenes J2818]
 gi|254936832|ref|ZP_05268529.1| sensor histidine kinase ResE [Listeria monocytogenes F6900]
 gi|284802392|ref|YP_003414257.1| hypothetical protein LM5578_2148 [Listeria monocytogenes 08-5578]
 gi|284995534|ref|YP_003417302.1| hypothetical protein LM5923_2099 [Listeria monocytogenes 08-5923]
 gi|47014535|gb|EAL05498.1| sensor histidine kinase ResE [Listeria monocytogenes str. 1/2a
           F6854]
 gi|258599550|gb|EEW12875.1| sensor histidine kinase ResE [Listeria monocytogenes FSL N3-165]
 gi|258609428|gb|EEW22036.1| sensor histidine kinase ResE [Listeria monocytogenes F6900]
 gi|284057954|gb|ADB68895.1| hypothetical protein LM5578_2148 [Listeria monocytogenes 08-5578]
 gi|284061001|gb|ADB71940.1| hypothetical protein LM5923_2099 [Listeria monocytogenes 08-5923]
 gi|293590490|gb|EFF98824.1| sensor histidine kinase ResE [Listeria monocytogenes J2818]
          Length = 596

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 80/378 (21%), Positives = 156/378 (41%), Gaps = 42/378 (11%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
             +  E  QL +IL   +DG+   + +  I+ +N    +                F    
Sbjct: 249 SALRQEKEQLSNILVGMADGVIKFSVDKTIILSNPPAEEFLH-----------NWFFSPE 297

Query: 505 TPSVMN------HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM 558
               +         L + L     Q  E        +   +++  ++            +
Sbjct: 298 NTEKVLIPVALNELLNDTLEKKESQVGEITF----ADHTYVAILTLLYTGEHVRSIVAVI 353

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            D++E KQ +                KSDF+  VSHE+RTP++ + G+SE I +      
Sbjct: 354 RDMTEEKQLE--------------KMKSDFVNNVSHELRTPISMLQGYSEAIIDGV--AQ 397

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
            +    E+A  I      +  +VND+LD++++E+G   +  + + L   + + IS   + 
Sbjct: 398 SDEEVREFAQIIYDESLRIGRLVNDMLDLARMEAGFNQMDNQKLPLAPLLRKVISNFDVL 457

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS---GGQIIIS-TTHTSN 734
           A E  + +             D   ++Q+ +N++ NAI  T      G++I+  T   + 
Sbjct: 458 AKENFVELGLELETPDLEYSYDPDRMEQVLINLIMNAIRHTGKEGYDGKVILKQTIDEAR 517

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGEGTGLGLPLAKAMVDANMGKFY 793
             +++ V D G G+   ++    + F ++  +++  +  GTG+GL + K +V+A+ GK  
Sbjct: 518 SNLVITVSDNGSGIAEEDIPYLFERFYKVDKARKRGKAVGTGIGLAIVKNIVEAHNGKIS 577

Query: 794 IFSTPAKGTLIEIIFPLY 811
           + S   KG+   I  PLY
Sbjct: 578 VESELGKGSDFIITLPLY 595


>gi|328472789|gb|EGF43638.1| two-component sensor histidine kinase (ResE) [Listeria
           monocytogenes 220]
          Length = 597

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 80/378 (21%), Positives = 156/378 (41%), Gaps = 42/378 (11%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
             +  E  QL +IL   +DG+   + +  I+ +N    +                F    
Sbjct: 250 SALRQEKEQLSNILVGMADGVIKFSVDKTIILSNPPAEEFLH-----------NWFFSPE 298

Query: 505 TPSVMN------HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM 558
               +         L + L     Q  E        +   +++  ++            +
Sbjct: 299 NTEKVLIPVALNELLNDTLEKKESQVGEITF----ADHTYVAILTLLYTGEHVRSVVAVI 354

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            D++E KQ +                KSDF+  VSHE+RTP++ + G+SE I +      
Sbjct: 355 RDMTEEKQLE--------------KMKSDFVNNVSHELRTPISMLQGYSEAIIDGV--AQ 398

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
            +    E+A  I      +  +VND+LD++++E+G   +  + + L   + + IS   + 
Sbjct: 399 SDEEVREFAQIIYDESLRIGRLVNDMLDLARMEAGFNQMDNQKLPLAPLLRKVISNFDVL 458

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS---GGQIIIS-TTHTSN 734
           A E  + +             D   ++Q+ +N++ NAI  T      G++I+  T   + 
Sbjct: 459 AKENYVELGLELETPDLEYSYDPDRMEQVLINLIMNAIRHTGKEGYDGKVILKQTIDEAR 518

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGEGTGLGLPLAKAMVDANMGKFY 793
             +++ V D G G+   ++    + F ++  +++  +  GTG+GL + K +V+A+ GK  
Sbjct: 519 SNLVITVSDNGSGIAEEDIPYLFERFYKVDKARKRGKAVGTGIGLAIVKNIVEAHNGKIS 578

Query: 794 IFSTPAKGTLIEIIFPLY 811
           + S   KG+   I  PLY
Sbjct: 579 VESELGKGSDFIITLPLY 596


>gi|46908181|ref|YP_014570.1| sensor histidine kinase ResE [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47093376|ref|ZP_00231143.1| sensor histidine kinase ResE [Listeria monocytogenes str. 4b H7858]
 gi|226224552|ref|YP_002758659.1| two-component sensor histidine kinase (ResE) [Listeria
           monocytogenes Clip81459]
 gi|254825557|ref|ZP_05230558.1| sensor histidine kinase ResE [Listeria monocytogenes FSL J1-194]
 gi|254852849|ref|ZP_05242197.1| sensor histidine kinase ResE [Listeria monocytogenes FSL R2-503]
 gi|254931881|ref|ZP_05265240.1| sensor histidine kinase ResE [Listeria monocytogenes HPB2262]
 gi|254992997|ref|ZP_05275187.1| two-component sensor histidine kinase (ResE) [Listeria
           monocytogenes FSL J2-064]
 gi|255520088|ref|ZP_05387325.1| two-component sensor histidine kinase (ResE) [Listeria
           monocytogenes FSL J1-175]
 gi|300763741|ref|ZP_07073738.1| sensor histidine kinase ResE [Listeria monocytogenes FSL N1-017]
 gi|46881451|gb|AAT04747.1| sensor histidine kinase ResE [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47018247|gb|EAL09013.1| sensor histidine kinase ResE [Listeria monocytogenes str. 4b H7858]
 gi|225877014|emb|CAS05723.1| Putative two-component sensor histidine kinase (ResE) [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|258606182|gb|EEW18790.1| sensor histidine kinase ResE [Listeria monocytogenes FSL R2-503]
 gi|293583432|gb|EFF95464.1| sensor histidine kinase ResE [Listeria monocytogenes HPB2262]
 gi|293594798|gb|EFG02559.1| sensor histidine kinase ResE [Listeria monocytogenes FSL J1-194]
 gi|300515477|gb|EFK42527.1| sensor histidine kinase ResE [Listeria monocytogenes FSL N1-017]
 gi|328466295|gb|EGF37452.1| two-component sensor histidine kinase (ResE) [Listeria
           monocytogenes 1816]
 gi|332312388|gb|EGJ25483.1| Sensor protein ResE [Listeria monocytogenes str. Scott A]
          Length = 596

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 80/378 (21%), Positives = 156/378 (41%), Gaps = 42/378 (11%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
             +  E  QL +IL   +DG+   + +  I+ +N    +                F    
Sbjct: 249 SALRQEKEQLSNILVGMADGVIKFSVDKTIILSNPPAEEFLH-----------NWFFSPE 297

Query: 505 TPSVMN------HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM 558
               +         L + L     Q  E        +   +++  ++            +
Sbjct: 298 NTEKVLIPVALNELLNDTLEKKESQVGEITF----ADHTYVAILTLLYTGEHVRSVVAVI 353

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            D++E KQ +                KSDF+  VSHE+RTP++ + G+SE I +      
Sbjct: 354 RDMTEEKQLE--------------KMKSDFVNNVSHELRTPISMLQGYSEAIIDGV--AQ 397

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
            +    E+A  I      +  +VND+LD++++E+G   +  + + L   + + IS   + 
Sbjct: 398 SDEEVREFAQIIYDESLRIGRLVNDMLDLARMEAGFNQMDNQKLPLAPLLRKVISNFDVL 457

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS---GGQIIIS-TTHTSN 734
           A E  + +             D   ++Q+ +N++ NAI  T      G++I+  T   + 
Sbjct: 458 AKENYVELGLELETPDLEYSYDPDRMEQVLINLIMNAIRHTGKEGYDGKVILKQTIDEAR 517

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGEGTGLGLPLAKAMVDANMGKFY 793
             +++ V D G G+   ++    + F ++  +++  +  GTG+GL + K +V+A+ GK  
Sbjct: 518 SNLVITVSDNGSGIAEEDIPYLFERFYKVDKARKRGKAVGTGIGLAIVKNIVEAHNGKIS 577

Query: 794 IFSTPAKGTLIEIIFPLY 811
           + S   KG+   I  PLY
Sbjct: 578 VESELGKGSDFIITLPLY 595


>gi|304406984|ref|ZP_07388638.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus curdlanolyticus YK9]
 gi|304343971|gb|EFM09811.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus curdlanolyticus YK9]
          Length = 482

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 91/410 (22%), Positives = 167/410 (40%), Gaps = 34/410 (8%)

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
           +P    ++  +          D+D+ I  + +  E   L SIL + SD +   + EG + 
Sbjct: 96  VPIRSLDEIGDLAHAFNRMAGDLDSLI--KDLNHEKDHLSSILRSMSDAVVTFDAEGSVT 153

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
            +N    KL                 E+   + +   L ++ S  +   ++  +  + + 
Sbjct: 154 MSNPPGEKLIE------KWNRLDWEDEEAKLTGVPGPLRDLYSRVIIDGIDSSSKINVRN 207

Query: 536 EKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
                +   +K           M D++E  + +                + DF+A VSHE
Sbjct: 208 GVWSVVMAPLKSDESVRGAVAVMRDVTEEFKLE--------------KLRRDFVANVSHE 253

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           IRTPL+ + G+SE I +            E    I      +  +V DLLD++++E+G  
Sbjct: 254 IRTPLSMLQGYSEAILDG--FADSPEERDELVQVIHDESVRMGRLVKDLLDLARMEAGHT 311

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSN 714
            L   P  +D  V         +A E+ I +          +  AD   ++Q+  N+L N
Sbjct: 312 ELKLMPCDIDNLVKRVHRKFLTFAKERDIRLVCELPEQHLFMESADEDRLEQVLTNLLDN 371

Query: 715 AIHFTPSGGQIIIS-------TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
           A+  TP+G  I +S          +    V L+++D G G+   +L    + F +   S+
Sbjct: 372 ALRHTPAGAVITVSGKMRAEELGRSEPAYVELQIKDEGEGIPAEDLPYIFERFYKADKSR 431

Query: 768 QI-RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           +     GTGLGL + K +V+++ G  ++ S   KGT   ++ P+ D+  P
Sbjct: 432 KRGSSSGTGLGLAIVKNIVESHEGHIHVDSLVGKGTTFTLLLPV-DSHRP 480


>gi|298387446|ref|ZP_06996998.1| NUDIX/MutT-family protein [Bacteroides sp. 1_1_14]
 gi|298259653|gb|EFI02525.1| NUDIX/MutT-family protein [Bacteroides sp. 1_1_14]
          Length = 883

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 98/553 (17%), Positives = 207/553 (37%), Gaps = 38/553 (6%)

Query: 278 INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS----LSAYFDEGENLTPETVDKCPIPF 333
           ++ +     + +  L + +      L  R          A     E L        P   
Sbjct: 348 VDGSASWSDEDYRWLSSLANVISICLELRRAKEKVIFEQAALARSERLFKNIFANIPAGV 407

Query: 334 FVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
            +Y   GNL   N   + +       ++             ++ ++     +  +R+  +
Sbjct: 408 EIYDKEGNLVDLNERDMDILGISDKSEVIGLNFFENPNVDAQILESIRKSSITDFRARYS 467

Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
              A       +  +   + +     +  +          I  ++ +     +++     
Sbjct: 468 FECAR-HTGYYRPLKAGVIELYTKVRKLYDNHGNLTGYILINMDNTERIDALKRISDFEN 526

Query: 453 QLCSILEATSDGIA---IINREGIILSTNRAVSKLFGYPVEDILRKPFTVF------LEQ 503
               I +    G A   ++NR+G          K +   + +    P +        +  
Sbjct: 527 LFLLISDYAKVGYAKLNLLNRQGY-------AIKQWFKNMGEDENTPLSDVVGVYSKMHP 579

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTK---EEKLLSLRIIIKKLPFSSCYS---LT 557
           +  S M  +  E      +    ++ +       E   +   +++               
Sbjct: 580 DDRSRMLAFFEEAKKGKAKAFKGEMRILRPGTKNEWNWVRTNVVLNLYEPEKGQVELIGV 639

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
            +DI+  K+ + KL  AK+ AE+    KS FLA +SHEIRTPL AI+GFS ++ +     
Sbjct: 640 NYDITALKETEAKLIEAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSLMVDTE--- 696

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
                  +Y + ++ + +L+L +++D+LD+SKIE+G  +     V ++    + +  +++
Sbjct: 697 -DMEERRQYMDIVEENNDLLLQLISDILDLSKIEAGTFDFTEREVDVNLLCEDIVLAMRM 755

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737
            A    + I         RI++D   + Q+  N ++NA+ FT  G  I +         +
Sbjct: 756 KA-RPNVEILFDRHLPECRIMSDRNRLHQVISNFVNNALKFTEEG-NIRVGYDQLDEAHL 813

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
              V DTG+G+      +  + F ++ +       GTGLGL + +++V+   G+  + S 
Sbjct: 814 RFYVADTGIGIEPEMQNEIFERFVKLNSFVH----GTGLGLSICRSIVEQLGGEIGVDSE 869

Query: 798 PAKGTLIEIIFPL 810
           P KG+      P+
Sbjct: 870 PEKGSCFWFTLPI 882


>gi|189352589|ref|YP_001948216.1| signal transduction histidine kinase [Burkholderia multivorans ATCC
            17616]
 gi|189336611|dbj|BAG45680.1| signal transduction histidine kinase [Burkholderia multivorans ATCC
            17616]
          Length = 1218

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 117/689 (16%), Positives = 241/689 (34%), Gaps = 37/689 (5%)

Query: 144  YGKTTLWPIEGTNLYVPID-LAALP----IYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
                     E     + +   A  P    +  R    SG  GF       +     A  +
Sbjct: 411  RNLLIYLRKEAQQHVLEVLHYACRPDGFLLLGRAEAVSGADGFEHAGAPHLYRKVPAAKR 470

Query: 199  RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
               +    +  ++   S           Q  P      +  +          DD      
Sbjct: 471  --QQGAFPIDALRPWASQGTAPPARRAQQADPVLEAANRTALERYAPPGFVVDDKGDVVH 528

Query: 259  YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
            +    S   +    E    + L +  + +   T++    E+           ++      
Sbjct: 529  FRGDVSGFVAPASGEAS--LALPRLLQPELNVTVRTALIEAKRTGQPVRRERVAL----- 581

Query: 319  ENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
               T   ++  P+     +   + +   +   L            G   + +   + +  
Sbjct: 582  -GDTHFALEVLPLA----AEDLVPHYLVTLERLPDDAPAPQNTNTGSPHSRVQELERTVT 636

Query: 379  NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
                 +   ++    + A       +    N   ++     ++      + +  +E  + 
Sbjct: 637  TLSDELEATQAQLKSVVAEFESANEELRTANEEMLSTNEELQSANEELLLAKQELESANQ 696

Query: 439  DTRINKRKMEIEVMQL-------CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
            +      +++    QL        +++E     + +++R+  +   +     LFG P + 
Sbjct: 697  ELASLNDELKSRNEQLDRVNDDLSNLVEGIPLPVVVLDRQLRLRHFSPQAQALFGLPDDS 756

Query: 492  ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
            +  +P        +       L  ++   ++   +        E +   + +   +    
Sbjct: 757  V-GQPLAQLNSLFSAVD----LERVVQSAVQGLADVEHEYQDSEGRWWLVNVRAYRTADD 811

Query: 552  S--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                  L   DI + K        A+  AE+ ++ K +FLA VSHE+R PL  I  ++ V
Sbjct: 812  RIDGAVLAFQDIHQLKSALGTAQSAQLDAERANTAKDNFLALVSHELRAPLNVISSWAAV 871

Query: 610  IK--NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
            +   ++R  P            I R   L  ++++DLLD+S+I SG+ +L  +PV    A
Sbjct: 872  LMTASERGMPTDEQMSQRAVTTILRHCQLQAELIDDLLDVSRISSGRFSLDSKPVDFAAA 931

Query: 668  VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727
            V   +   +  A +K I++ TS   +   +  D R ++Q+A N++ NA+ FTP GG++ +
Sbjct: 932  VRTVVESHRPVAAKKEIMLATSGLQSQAVVSGDARRLQQVASNLIGNALKFTPQGGRVEV 991

Query: 728  STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
            + T      + L V D G+G+    L +    F Q   S+  +  G GLGL + K +V A
Sbjct: 992  ALT-RLGALIELSVADNGIGVKPELLPRLFDRFMQSDTSRTRQYGGLGLGLSIVKHLVTA 1050

Query: 788  NMGKFYIFST-PAKGTLIEIIFPLYDTSH 815
            + G     S    +GT + +  PL  T+ 
Sbjct: 1051 HGGTVTASSEGEGRGTRLTVRIPLLQTAA 1079



 Score = 38.1 bits (87), Expect = 5.9,   Method: Composition-based stats.
 Identities = 36/445 (8%), Positives = 102/445 (22%), Gaps = 37/445 (8%)

Query: 39   SKKENPCHDSFEQSNFTDQNQESVSNTNYLD-SENTFVFDPIPRTVRFTWNIDAHGYLKE 97
            +K+E    +          N E  S    LD   +          +     +D    L+ 
Sbjct: 687  AKQELESANQE----LASLNDELKSRNEQLDRVNDDLSNLVEGIPLPVV-VLDRQLRLRH 741

Query: 98   ISEELPKTIGNYAFKMIGMRLCDVSDILHI-DPNNHIGDLLKRQNTWYGKTTLWPIEGTN 156
             S +     G      +G  L  ++ +    D    +   ++       +      +   
Sbjct: 742  FSPQAQALFGLP-DDSVGQPLAQLNSLFSAVDLERVVQSAVQGLADVEHE----YQDSEG 796

Query: 157  LYVPIDLAALPIYSR--NREFSGFRGFGIVHVN--RVDNDPRALGKRLDKKFSHLH---- 208
             +  +++ A        +     F+    +        +      +    K + L     
Sbjct: 797  RWWLVNVRAYRTADDRIDGAVLAFQDIHQLKSALGTAQSAQLDAERANTAKDNFLALVSH 856

Query: 209  --EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
                     S         S++  P   +M  +  +    +      L  +   +     
Sbjct: 857  ELRAPLNVISSWAAVLMTASERGMPTDEQMSQRAVTTILRHCQLQAELIDDLLDVSRISS 916

Query: 267  SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
                             T  +    +    +        ++   +S      + +    +
Sbjct: 917  GRFSLDSKPVDFAAAVRTVVESHRPVAAKKEIMLATSGLQSQAVVSGDARRLQQVASNLI 976

Query: 327  DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
                   F    G +     +   L     +   +   G+   L                
Sbjct: 977  GNALK--FTPQGGRVEV---ALTRLGALIELSVADNGIGVKPELLPRLFDRFMQSDTSRT 1031

Query: 387  YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
             +     +  S   H +  +      +T     +       +    ++    +       
Sbjct: 1032 RQYGGLGLGLSIVKHLVTAHGGT---VTASSEGEGRGTRLTVRIPLLQTAATEPGTV-AT 1087

Query: 447  MEIEVMQLCSILEATSDGIAIINRE 471
               E  +L    +  S  + +++ +
Sbjct: 1088 APAESARL----DGLS--VLLVDDD 1106


>gi|269137887|ref|YP_003294587.1| aerobic respiration control sensor protein ArcB [Edwardsiella tarda
           EIB202]
 gi|267983547|gb|ACY83376.1| aerobic respiration control sensor protein ArcB [Edwardsiella tarda
           EIB202]
 gi|304557940|gb|ADM40604.1| Aerobic respiration control sensor protein ArcB [Edwardsiella tarda
           FL6-60]
          Length = 778

 Score =  318 bits (815), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 85/444 (19%), Positives = 187/444 (42%), Gaps = 19/444 (4%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L            +L+    +  + L        KA +    +  + ++ E
Sbjct: 81  EESRQRLSKLVNKLEEMRHRDLKLNQQLKDNISQLNQEIADRVKAEEARLQVL-DTLQHE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
                + + ++E +   L S L+++ D +   N +G     NRA+  L G   + ++   
Sbjct: 140 IDQRELAQVELEQQSALLRSFLDSSPDLVYYRNEDGEFSGCNRAMELLTGKSEKQLIGLT 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII--KKLPFSSCY 554
                + +    +     ++   ++  T E+  +     +    LR +    ++      
Sbjct: 200 PRDVYDPDIAQKVIETDEKVFRHNVSLTYEQWLVYPDGRKACFELRKVPFYDRVGKRHGL 259

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+ ++ L +        S  K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 260 MGFGRDITERKRYQDALEN-------ASREKTTFISTISHELRTPLNGIVGLSRILLDTE 312

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                N   ++Y   I  S   + +I ND++++ K+E  K+ L  + +     +++  +L
Sbjct: 313 L----NEEQLKYLKTIHVSAIALGNIFNDIIEMDKLERRKVQLDNQAIDFTGFLTDLENL 368

Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
             L    K +    +    +P  ++AD   ++QI  N++ NA+ FT  GG + +      
Sbjct: 369 SGLLVQPKGLSFTLTPDPALPHKVMADGTRLRQILWNLIGNAVKFTQRGG-VSVRVWREQ 427

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMGKF 792
            ++++  VRDTG+G+   E +K    + Q+ +    +   GTG+GL ++K +     G  
Sbjct: 428 QDKLLFEVRDTGIGIPPEEQDKIFAMYYQVKDMHGGKPATGTGIGLAVSKRLAQTMGGDI 487

Query: 793 YIFSTPAKGTLIEIIF--PLYDTS 814
            + S   +G    +    P+ + +
Sbjct: 488 VVSSVAGEGACFTLSIRAPVVEEA 511



 Score = 45.0 bits (105), Expect = 0.051,   Method: Composition-based stats.
 Identities = 18/174 (10%), Positives = 42/174 (24%), Gaps = 10/174 (5%)

Query: 292 LQNNSKESFEYLSHRNHPSLSA--YFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSF 348
            +    +  + L H       A    ++   L    +D  P   +     G     N + 
Sbjct: 125 AEEARLQVLDTLQHEIDQRELAQVELEQQSALLRSFLDSSPDLVYYRNEDGEFSGCNRAM 184

Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
            LLT       I        L        + A K +           +      + +   
Sbjct: 185 ELLTGKSEKQLIG-------LTPRDVYDPDIAQKVIETDEKVFRHNVSLTYEQWLVYPDG 237

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
                        ++  +     G   +  + +  +  +E    +  + +   S
Sbjct: 238 RKACFELRKVPFYDRVGKRHGLMGFGRDITERKRYQDALENASREKTTFISTIS 291



 Score = 44.2 bits (103), Expect = 0.088,   Method: Composition-based stats.
 Identities = 19/127 (14%), Positives = 37/127 (29%), Gaps = 5/127 (3%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN-TWYGKTTLW 150
            G     +  +    G    ++IG+   DV D           + + R N +   +  L 
Sbjct: 174 DGEFSGCNRAMELLTGKSEKQLIGLTPRDVYDPDIAQKVIETDEKVFRHNVSLTYEQWLV 233

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
             +G       +L  +P Y R  +  G  GFG           +   +   ++ +     
Sbjct: 234 YPDGRKACF--ELRKVPFYDRVGKRHGLMGFG--RDITERKRYQDALENASREKTTFIST 289

Query: 211 KKGHSSV 217
                  
Sbjct: 290 ISHELRT 296


>gi|144040|gb|AAA22970.1| BvgS protein [Bordetella pertussis]
          Length = 1238

 Score =  318 bits (815), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 113/587 (19%), Positives = 214/587 (36%), Gaps = 31/587 (5%)

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
               +        + ++ ES L     +    +   T++     +  +  +       RN
Sbjct: 363 LRSGEADMAGALFVNSARESFLSFSRPYVRNGMVIVTRQDPDAPVDADHLDGRTVALVRN 422

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLF-----------YANPSFLLLTKYKS 356
             ++             T D       + ++G              Y N  F    +  S
Sbjct: 423 SAAIPLLQRRYPQAKVVTADNPSEAMLMVANGQADAVVQTQISASYYVNRYFAGKLRIAS 482

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT-- 414
             D+  A          +    + +   +   S+    +  +R      +     A    
Sbjct: 483 ALDLPPAEIALAT-TRGQTELMSILNKALYSISNDELASIISRWRGSDGDPRTWYAYRNE 541

Query: 415 ---FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471
               I     +          +  +    +  +R +  ++  +  +++ T + I + ++E
Sbjct: 542 IYLLIGLGLLSALLFLSWIVYLRRQIRQRKRAERALNDQLEFMRVLIDGTPNPIYVRDKE 601

Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH----YLTEILSLDLRQTLEK 527
           G +L  N A    FG   + +L K          P++        LT + +    +  ++
Sbjct: 602 GRMLLCNDAYLDTFGVTADAVLGKTIPEANVVGDPALAREMHEFLLTRVAAEREPRFEDR 661

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
                 +   +    I                 DI+E  +   +L  AK+ A+  +  K+
Sbjct: 662 DVTLHGRTRHVYQWTIPYGDSLGELKGIIGGWIDITERAELLRELHDAKESADAANRAKT 721

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
            FLA +SHEIRTP+ AIIG  E+       P       +       S   +L+++ D+LD
Sbjct: 722 TFLATMSHEIRTPMNAIIGMLELAL---LRPTDQEPDRQSIQVAYDSARSLLELIGDILD 778

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN-NIPRILADLRSVK 705
           I+KIE+GK +L     +L      AI +    A +K I +        +  +L D   +K
Sbjct: 779 IAKIEAGKFDLAPVRTALRVLPEGAIRVFDGLARQKGIELVLKTDIVGVDDVLIDPLRMK 838

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNE---EVILRVRDTGVGMTNYELEKAMKPFGQ 762
           Q+  N++ NAI FT  G Q++++ T   +     V   V DTG G++  +  +  KPF Q
Sbjct: 839 QVLSNLVGNAIKFTTEG-QVVLAVTARPDGDAAHVQFSVSDTGCGISEADQRQLFKPFSQ 897

Query: 763 IPNSQ-QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           +  S       GTGLGL +++ +V+   G   + S P  GT + +  
Sbjct: 898 VGGSAEAGPAPGTGLGLSISRRLVELMGGTLVMRSAPGVGTTVSVDL 944



 Score = 51.2 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/234 (10%), Positives = 57/234 (24%), Gaps = 16/234 (6%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D  G +   ++    T G  A  ++G  + + + +        + + L  +     +   
Sbjct: 599 DKEGRMLLCNDAYLDTFGVTADAVLGKTIPEANVVGDPALAREMHEFLLTRVAAEREPRF 658

Query: 150 WPIE----GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
              +    G   +  +    +P      E  G  G  I        +         +   
Sbjct: 659 EDRDVTLHGRTRH--VYQWTIPYGDSLGELKGIIGGWI--DITERAELLRELHDAKESAD 714

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
             +  K    +    +                 +++ L       D       Y    S 
Sbjct: 715 AANRAKTTFLATMSHEIRTPMNAIIGML-----ELALLRPTDQEPDRQSIQVAYDSARSL 769

Query: 266 ESSLPEQEDFHTINLN---QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
              + +  D   I          +     L   +   F+ L+ +    L    D
Sbjct: 770 LELIGDILDIAKIEAGKFDLAPVRTALRVLPEGAIRVFDGLARQKGIELVLKTD 823


>gi|117926619|ref|YP_867236.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117610375|gb|ABK45830.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1390

 Score =  318 bits (815), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 111/590 (18%), Positives = 208/590 (35%), Gaps = 67/590 (11%)

Query: 280 LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSH 338
            +   +      +        +  +     +      + ++   + ++   +  F +   
Sbjct: 367 AHDQGRHALPVGVGGEMGILAKAFAQMLQRTAEQNAAQADHRANQLLEATDVGVFGIDDQ 426

Query: 339 GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398
           G + + NP+   +  Y   + +      S +  A             +  + R       
Sbjct: 427 GLVSFINPAAERMLGYSR-EALLGKNIHSMVHHAYADGTPYPEHACRMSAALREQREYHV 485

Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI---------NKRKMEI 449
               +     +   +T+       Q  +         +  + R           + ++  
Sbjct: 486 TDEVLWKQDGSPFYVTYSSIPLW-QGDQRSGAVITFWDTTEQRQDEQKLIAAQQEAELIA 544

Query: 450 EVMQ----------------------LCSILEATS-------DGIAIIN-----REGIIL 475
              +                      L +++ +          G+ + +      +  ++
Sbjct: 545 AEERALEALFKLTLQESATTHYLEEVLEALIHSVPWLKLKPVGGLFLTDESAPQPQLKLV 604

Query: 476 STN---------RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
             N         R     FG  +  +  +  T+                I +        
Sbjct: 605 -VNHNLDPELKQRCAKVPFGTCLCGLAAQSGTLQFASCMDHRHVITFEGITAHGHYNVPI 663

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE---WKQEKNKLSHAKKIAEKESS 583
                      L       +K   ++  +   H IS     ++   +LS AK+ AE+ + 
Sbjct: 664 MDGAQVLGVMVLYLAHGHEQKERETAFLARAGHIISMGLMRRRAAKELSCAKQRAERANH 723

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
            KSDFLA +SHEIR P+ AII  S +   Q      + R  +Y + I  +G  +L I+ND
Sbjct: 724 AKSDFLATMSHEIRNPMNAIIALSHLALEQSH----DQRQRDYLSKIHTAGQSLLRIIND 779

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLR 702
           +LD SKIE+GK+ +      LD+ +S   +L  + A EK+I +    A  +P  +  D  
Sbjct: 780 ILDFSKIEAGKLEIEQTDFQLDDVLSNLATLTAVKAQEKQIELIFDKAPALPHALRGDPL 839

Query: 703 SVKQIALNILSNAIHFTPSGGQ---IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKP 759
            + QI LN++ NAI FT  G     I   T      E+   VRDTG+GM   ++ +  +P
Sbjct: 840 RLSQILLNVVGNAIKFTEQGEVEMSITRHTQRGELLELCFTVRDTGIGMNEAQIAELFRP 899

Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           + Q  +S   R  G+GLGL ++  +V    G   + STP  G+   I  P
Sbjct: 900 YQQAESSTSRRFGGSGLGLSISHQLVTLMNGTIQVSSTPGVGSQFVITLP 949



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 73/226 (32%), Gaps = 16/226 (7%)

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
            +LL    +     +  V+L RS    + A  R      + +   A+             
Sbjct: 329 ESLLIGGGMLLMALLLAVLLTRSLTHPLRAMIRAVEDTAHDQGRHALPV-------GVGG 381

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
            M         +  R  ++       +   +LEAT  G+  I+ +G++   N A  ++ G
Sbjct: 382 EMGILAKAFAQMLQRTAEQNAAQADHRANQLLEATDVGVFGIDDQGLVSFINPAAERMLG 441

Query: 487 YPVEDILRKPFTVFLEQNTP-----SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
           Y  E +L K     +                ++  L       +    L    +     +
Sbjct: 442 YSREALLGKNIHSMVHHAYADGTPYPEHACRMSAALREQREYHVTDEVLWKQ-DGSPFYV 500

Query: 542 RIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
                 L          +T  D +E +Q++ KL  A++ AE  ++ 
Sbjct: 501 TYSSIPLWQGDQRSGAVITFWDTTEQRQDEQKLIAAQQEAELIAAE 546



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 18/186 (9%), Positives = 53/186 (28%), Gaps = 26/186 (13%)

Query: 39  SKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEI 98
           +K          + N    +  +       D                 + ID  G +  I
Sbjct: 387 AKAFAQMLQRTAEQNAAQADHRANQLLEATDVG--------------VFGIDDQGLVSFI 432

Query: 99  SEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI-------GDLLKRQNTWYGKTTLWP 151
           +    + +G     ++G  +  +    + D   +          L +++        LW 
Sbjct: 433 NPAAERMLGYSREALLGKNIHSMVHHAYADGTPYPEHACRMSAALREQREYHVTDEVLWK 492

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
            +G+  Y  +  +++P++  + + SG                        ++   +   +
Sbjct: 493 QDGSPFY--VTYSSIPLWQGD-QRSGA--VITFWDTTEQRQDEQKLIAAQQEAELIAAEE 547

Query: 212 KGHSSV 217
           +   ++
Sbjct: 548 RALEAL 553


>gi|311277818|ref|YP_003940049.1| multi-sensor hybrid histidine kinase [Enterobacter cloacae SCF1]
 gi|308747013|gb|ADO46765.1| multi-sensor hybrid histidine kinase [Enterobacter cloacae SCF1]
          Length = 775

 Score =  318 bits (815), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 86/435 (19%), Positives = 177/435 (40%), Gaps = 17/435 (3%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L            +L  +Q     +     I   +  +         ++ E
Sbjct: 81  EESRQRLSRLVEKLEEMRERDLKL-NVQLKDNIAQLNQEISDREKAEAERQSTLEQLKVE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             +    + ++E +   L S L+A+ D +   N +      NRA+  L G   + ++   
Sbjct: 140 MQEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLIHLH 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCY 554
                       +     ++   ++  T E+        +    +R +    ++      
Sbjct: 200 PQDVYSPEAAEKVIETDEKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGL 259

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+        +   E+ S  K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 260 MGFGRDITERKR-------YQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTD 312

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     +Y   I  S   + +I ND++D+ K+E  K+ L  +PV     +++  +L
Sbjct: 313 LTA----EQEKYLKTIHISAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTGFMADLENL 368

Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
             L A +K +         +P  ++ D   ++QI  N++SNA+ FT  G Q+ +   + +
Sbjct: 369 SGLQAQQKGLRFVMEPTLPLPHKVITDGTRLRQILWNLISNAVKFTQQG-QVTVRVRYDA 427

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMGKF 792
            + +   V D+G+G+   E +K    + Q+ +S   +   GTG+GL ++K +     G  
Sbjct: 428 GDMLRFEVEDSGIGIPQEEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSKRLAKNMGGDI 487

Query: 793 YIFSTPAKGTLIEII 807
            + S P KG+   + 
Sbjct: 488 TVSSLPGKGSTFTLT 502



 Score = 47.3 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 25/226 (11%), Positives = 51/226 (22%), Gaps = 10/226 (4%)

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHT--INLNQYTKKQYFGTLQNNSK 297
           +S + E        L      L    E  L            LNQ    +     +  S 
Sbjct: 73  LSVVVEQLEESRQRLSRLVEKLEEMRERDLKLNVQLKDNIAQLNQEISDREKAEAERQST 132

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKS 356
                +  +         ++  +     +D  P   F  +        N +  LLT    
Sbjct: 133 LEQLKVEMQEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSE 192

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
              I        L      S   A K +           +      + +           
Sbjct: 193 KQLI-------HLHPQDVYSPEAAEKVIETDEKVFRHNVSLTYEQWLDYPDGRKACFEIR 245

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
                ++  +     G   +  + +  +  +E       + +   S
Sbjct: 246 KVPYYDRVGKRHGLMGFGRDITERKRYQDALERASRDKTTFISTIS 291


>gi|193214503|ref|YP_001995702.1| PAS/PAC sensor hybrid histidine kinase [Chloroherpeton thalassium
           ATCC 35110]
 gi|193087980|gb|ACF13255.1| PAS/PAC sensor hybrid histidine kinase [Chloroherpeton thalassium
           ATCC 35110]
          Length = 1123

 Score =  318 bits (815), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 103/751 (13%), Positives = 239/751 (31%), Gaps = 69/751 (9%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI-DPNNHIGDLLKRQNTWYGKTTLW 150
                +++    + +G  + +++G ++  +         ++ I   L+   +   +  L 
Sbjct: 273 DDLFYKLNHTFCEMLGYKSEELLGKKMRIIFFSDDDYQGDSGIYQALEANLSVKREVRLK 332

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
             +G+   + + ++  P+ S +  FS    F ++          A  +      S +   
Sbjct: 333 CKDGSA--LDVYMSISPLNSTD--FSKGLAFSVL-DISKQKSAAAQLQEQKATLSAIFRS 387

Query: 211 KK---------GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
                          V     ++             +  + L    A+   V +      
Sbjct: 388 TPTGIGLILNNQFMEVNGRFCEMLGYHQDELIATHPDSPNRL-CQEAYDALVSEILDQIN 446

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
                +   + +      ++             +   +F  L         +      + 
Sbjct: 447 EQGIGTCETQFQRKDGSTIHVLLSAAQLDPDDASKGITFSALDITERTQAESKLQVVADE 506

Query: 322 TPETVDKCPIPFFVYSHG--NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
               ++  P   ++       + +AN   +    +  V          T++       + 
Sbjct: 507 FKAVLNNFPQILYIIDPETYEIIFANKKLIDTVGFNPV-----GHICYTVIQDYFKPCDL 561

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
               +                     +      +        +     M    I  +   
Sbjct: 562 CATSIRSLNEKGQVYTWEYHSKHYDKD----YLINEQIIGWPDGRDVRMK---IVIDISQ 614

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
            +  +RK++ +      +L+   D I++ + +G IL  N+A   +FG+  E+IL K   +
Sbjct: 615 QKKAERKIQEQAE----LLDKAHDAISLRSLDGKILYWNKAAEFIFGWTQEEILGKSDDM 670

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--YSLT 557
              +    V+   +  ++        E  T     +  ++     + K    +       
Sbjct: 671 IFSKENLYVLQEAVHTVIDTG-EWIGEIETQTKHGDNIVIDSHWSLVKDDSGNPDTILTI 729

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
             DI+  KQ + +L   +++              ++H++   L+ I+   + +K +    
Sbjct: 730 STDITIKKQIEKQLLRTQRLENIGM-----LAGGIAHDLNNILSPILLSIQYLKMK---- 780

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
           + +P   +  + + +S     D+V  +L  SK   GK      P+ +   V+E  SL+  
Sbjct: 781 VQDPHLSDVLDSVRQSAQRGADMVKQILSFSKGREGK----RIPIKMHHLVNELESLIYD 836

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT------- 730
               K + +  +   ++  I  D   ++Q+ LN+  NA       G + I          
Sbjct: 837 TFP-KGVTVDLNVPKSLSCISGDPTELQQVLLNLCVNARDAMQEAGVLSIKAEEAFFDAS 895

Query: 731 -------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
                    +   + L V DTG G+  + ++K   PF     +    G+GTGLGL     
Sbjct: 896 TPNMPPELKTGVYIHLSVSDTGTGIPEHLIDKIFDPFFTTKEA----GKGTGLGLFTVHG 951

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           +V  + G   + S    GT   + FP   +S
Sbjct: 952 IVKKHNGFLSVHSKLDHGTTFHLYFPAEKSS 982



 Score = 51.2 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 42/268 (15%), Positives = 75/268 (27%), Gaps = 24/268 (8%)

Query: 335 VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394
           +   G +   +  FL    Y + D +      + LL  P      A++ +    S     
Sbjct: 6   ITEDGLIQEVSSEFLKTLSYDAHDVLGEP--FTKLLAEPF--PKKAVQYIQQVFSGGHIW 61

Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE---- 450
                L T       ++ + F      N   +                  R         
Sbjct: 62  NIKWPLQTKT---GQTIELLFRAEIMENGSGQKSALLIFSNLHAPGHHAARSQSSSPNSV 118

Query: 451 -VMQLCSILEATSDGIAII---NREGIILSTNRAVSKLFGYPVEDILRKP---FTVFLEQ 503
              QL  +L     G+A       E  +L  ++   KL GY  ED +R     +   +  
Sbjct: 119 SEAQLALLLNHFP-GMAYRCANEPEWPMLFASKGCQKLTGYLPEDFVRTKQVFYNDLIHP 177

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-----YSLTM 558
           +    +   + + +       L       T +EK +  +                    +
Sbjct: 178 DDRHYVWEEIQQAIESGKVFKLFYRIRTQTGQEKWVFEQGHAIPGTNYKGTETLMLEGFI 237

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKS 586
            DISE KQ ++ L   + I        S
Sbjct: 238 SDISELKQAESALMQHQAIMNSIFRASS 265


>gi|167764948|ref|ZP_02437069.1| hypothetical protein BACSTE_03340 [Bacteroides stercoris ATCC
           43183]
 gi|167697617|gb|EDS14196.1| hypothetical protein BACSTE_03340 [Bacteroides stercoris ATCC
           43183]
          Length = 828

 Score =  318 bits (815), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 101/518 (19%), Positives = 206/518 (39%), Gaps = 30/518 (5%)

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGG 365
                    D  E L        P    +Y   G L   N   + +   +   D+     
Sbjct: 328 EAIRERQALDRSEKLFRNIFANIPAGVEIYDTDGFLVDVNNKNIEIFGIRDKADVIGINL 387

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
                 +P+L +    + ++ +R D                + N + +     +  +   
Sbjct: 388 FENPNLSPQLIEQIRDRDIVDFRLD---YEFENVEGYYPSGKRNKINLYTKISKLYDSKG 444

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA---IINREGI-ILSTNRAV 481
                  I  ++ +      ++         I +    G A   +++R+G  I    + +
Sbjct: 445 NFTGYAFINIDNTERMDALNRICDFENFFLLISDYAKVGYAKSNLLDRKGYAIKQWYKNM 504

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL---GSTKEEKL 538
            +    P+ DI+       +  +    +  +L +    ++R    +I +   G+  +   
Sbjct: 505 GEDENTPLSDIIG--VYNKMHPDDRKRILDFLYKARLGEVRDFKGEIRILHPGTEAQWNW 562

Query: 539 LSLRIIIKKLPFSSCYSLTMH---DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
           +   +++ +    +     +    DI+E K+ + KL  AK+ AE     KS FLA +SHE
Sbjct: 563 VRTNVVVNQYQPENGVIELISVNYDITELKETEAKLIDAKEKAETADRLKSAFLANMSHE 622

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           IRTPL AI+GFS ++              +Y   ++ +  L+L +++D+LD+SKIE+G  
Sbjct: 623 IRTPLNAIVGFSSLLVQGE----NPEEREQYMAIVEENNELLLQLISDILDLSKIEAGTF 678

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR--ILADLRSVKQIALNILS 713
           +   + + +++   + +  ++L A      +   F + +P   I++D   + Q+  N ++
Sbjct: 679 DFVKQELDVNQLCEDMVRTMKLKARPG---VEVVFDHRLPECIIVSDRNRLNQVIANFMN 735

Query: 714 NAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
           NAI FT +G  I +         +   V DTG+G+   +  +    F ++ +       G
Sbjct: 736 NAIKFTSTGS-IRLGYGQAETNLLRFYVADTGIGIIQEKQAEIFDRFVKLNSFVH----G 790

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
           TGLGL ++K++V+   G   + S   KG       P+ 
Sbjct: 791 TGLGLSISKSIVEQLGGTIGVESESGKGACFWFTLPVA 828



 Score = 60.0 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 52/347 (14%), Positives = 108/347 (31%), Gaps = 54/347 (15%)

Query: 315 FDEGENLTPETVDKCPIPFFVYSHGNLFYANPS-FLLLTKYKSVDD----IEIAGGLSTL 369
             EG     E     P+ F  +    +    P  F  L K   +++    +    G+  L
Sbjct: 216 VAEGVLPAVEAFRNIPVTFMPWWTTQVLSQKPILFESLYKLPEMEEGEFRLLEQQGIKAL 275

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
           +  P ++++     + +   DRT + ++       W    +  ++     +  Q      
Sbjct: 276 MAVPLVANDTVKGFMGVDLVDRTILWSNEDYQ---WLGSLANIISICVELRKTQD----- 327

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-P 488
                    +    ++ ++       +I      G+ I + +G ++  N    ++FG   
Sbjct: 328 ---------EAIRERQALDRSEKLFRNIFANIPAGVEIYDTDGFLVDVNNKNIEIFGIRD 378

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI-TLGSTKEEKL--LSLRIII 545
             D++          N    +   + +   +D R   E     G     K   ++L   I
Sbjct: 379 KADVIGINLFE--NPNLSPQLIEQIRDRDIVDFRLDYEFENVEGYYPSGKRNKINLYTKI 436

Query: 546 KKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESS------HKSDFLA----- 590
            KL  S      Y+    D +E     N++   +      S        KS+ L      
Sbjct: 437 SKLYDSKGNFTGYAFINIDNTERMDALNRICDFENFFLLISDYAKVGYAKSNLLDRKGYA 496

Query: 591 ------RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
                  +  +  TPL+ IIG    +      P    R +++     
Sbjct: 497 IKQWYKNMGEDENTPLSDIIGVYNKM-----HPDDRKRILDFLYKAR 538


>gi|161616338|ref|YP_001590303.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Paratyphi B str. SPB7]
 gi|168243164|ref|ZP_02668096.1| PAS fold family protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|168262659|ref|ZP_02684632.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|194451313|ref|YP_002047357.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|200387522|ref|ZP_03214134.1| PAS fold family protein [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|161365702|gb|ABX69470.1| hypothetical protein SPAB_04147 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194409617|gb|ACF69836.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|199604620|gb|EDZ03165.1| PAS fold family protein [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|205337795|gb|EDZ24559.1| PAS fold family protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|205348428|gb|EDZ35059.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
          Length = 778

 Score =  318 bits (815), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 84/435 (19%), Positives = 177/435 (40%), Gaps = 17/435 (3%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L +          +L  +Q     +     I   +  +         ++ E
Sbjct: 81  EESRQRLSRLVQKLEEMRERDLKL-NVQLKDNIAQLNQEIADREKAEAELQETFEQLKVE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             +    + ++E +   L S L+A+ D +   N +      NRA+  L G   + ++   
Sbjct: 140 IKEREEAQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCY 554
                       +     ++   ++  T E+        +    +R +    ++      
Sbjct: 200 PEDVYSPEAAEKVIETDEKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGL 259

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+        +   E+ S  K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 260 MGFGRDITERKR-------YQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTD 312

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     +Y   I  S   + +I ND++D+ K+E  K+ L  +P+     +++  +L
Sbjct: 313 LTA----EQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPIDFTSFMADLENL 368

Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
             L A +K +         +P  ++ D   ++QI  N++SNA+ FT  G Q+ +   +  
Sbjct: 369 SGLQAQQKGLRFVLEPTLPLPHKVITDGTRLRQILWNLISNAVKFTQQG-QVTVRARYDE 427

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMGKF 792
            + +   V D+G+G+   E +K    + Q+ +S   +   GTG+GL +++ +     G  
Sbjct: 428 GDMLHFEVEDSGIGIPQDEQDKIFAMYYQVKDSNGGKPATGTGIGLAVSRRLAKNMGGDI 487

Query: 793 YIFSTPAKGTLIEII 807
            + S P KG+   + 
Sbjct: 488 TVSSLPGKGSTFTLT 502


>gi|153808539|ref|ZP_01961207.1| hypothetical protein BACCAC_02834 [Bacteroides caccae ATCC 43185]
 gi|149128861|gb|EDM20078.1| hypothetical protein BACCAC_02834 [Bacteroides caccae ATCC 43185]
          Length = 622

 Score =  318 bits (815), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 113/515 (21%), Positives = 202/515 (39%), Gaps = 40/515 (7%)

Query: 313 AYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
                 E +        P+   +Y+  G L   N   L +    S +D+        L +
Sbjct: 130 QALQNSERILHNIYKNIPVGIELYNKDGLLIDLNKKELEMFHIASKEDVLGVN----LFE 185

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTI-----QWNRENSLAMTFIPFEKANQFPE 426
            P L +    K   L  ++            I       N   S+ +T       +   E
Sbjct: 186 NPLLPEEIKQK---LRNNEDADFTFCYEFSKINGYYQSQNSGGSIDLTTKVTTLYDHNHE 242

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN---REGI-ILSTNRAVS 482
            +    I  +  +  I   K++        + +    G A  +   R+G  + S  R V 
Sbjct: 243 PINYLVINVDKTENTIAYNKIQEFKNFFDLVGDYAKVGYAHFDALSRDGYALSSWYRNVG 302

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
           +  G P+ +I+             +VM  +L +++       L +       +      R
Sbjct: 303 EKEGTPLPEIIG--IHSHFHPEDRAVMLDFLDKVIK-GESSKLCRDMRIRRADGNYTWTR 359

Query: 543 IIIK-----KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
           + +                   DI++ K+ +  L  AK+ AE+    KS FLA +SHEIR
Sbjct: 360 VNVLVRNYLPQDNIIEMLCINFDITQLKETERMLIQAKEKAEESDRLKSAFLANMSHEIR 419

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TPL AI+GFS +++            ++Y   I+ +   +L +++D+LD+SKIE+G  + 
Sbjct: 420 TPLNAIVGFSSMLQE----ADNPEEKLQYVTIIEENNKRLLQLISDILDLSKIEAGTFDF 475

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL--ADLRSVKQIALNILSNA 715
            FE V+     +E    +Q+  + +   +    + ++P +   +D   + Q+  N + NA
Sbjct: 476 TFEKVNAKRLCNELYQAMQMRTSPQ---VELRLSPDLPDLQLTSDKSRLYQVLSNFVVNA 532

Query: 716 IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           + FT  G  I IS      +E    V DTG+G+   +       F ++ N       GTG
Sbjct: 533 LKFTSEGS-ITISYQIK-GKEAKFSVEDTGIGIEPEKQTAVFNRFVKLNNFI----PGTG 586

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           LGL + ++++    GK  + S P KG+      PL
Sbjct: 587 LGLSICQSIITQLGGKIGVDSEPGKGSCFWFTHPL 621


>gi|108758345|ref|YP_628621.1| sensory box histidine kinase [Myxococcus xanthus DK 1622]
 gi|108462225|gb|ABF87410.1| sensory box histidine kinase [Myxococcus xanthus DK 1622]
          Length = 869

 Score =  318 bits (815), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 87/522 (16%), Positives = 184/522 (35%), Gaps = 46/522 (8%)

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIE-- 361
             +    +A  +  E      ++  P P   V + G L + N     +  Y   + +   
Sbjct: 354 EAHRQQATAALEASEARYRGLLETTPAPLLTVDAQGLLRFVNTEAERVFGYPREELLGRE 413

Query: 362 -IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
                   L     L      + +   R D + ++   RL  +      S+        +
Sbjct: 414 VEVLVPEGLFGGRSLDTGLGERAIQGRRKDGSPLSLEVRLSPVSGPEGPSVLAVVRDVSE 473

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
                        E      +  + + E++  Q+ ++L+ T  GI     +G  L  N  
Sbjct: 474 R------------ERYLSKVQRAREEAEMQRSQVQALLDHTPVGIVFAEADGGGLVANPV 521

Query: 481 VSKLFGYPVE----DILRKPFTVFLEQ--NTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
             +L G P++     +      V               +  +L+  L     +  L    
Sbjct: 522 AEQLLGRPLKGVSLAMTGINPVVLTTDGKPARREDVPIVRALLTGQLAGP--EEFLILHP 579

Query: 535 EEKLLSLRIIIKKLPF----SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
           +   L + +    +            T  D++                 +    + ++++
Sbjct: 580 DGSRLPVLMTAAPVFGPSGKVRGVVSTAQDVTTR--------------HELDRLREEYVS 625

Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650
            +SH++R PL  I      +  +        R       I RS   +  ++ DLL+ S++
Sbjct: 626 LISHDLRNPLHTISLRV-GLLRRALREQNLEREESMTEAIQRSVAWMNTMIEDLLEGSRL 684

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710
           ES +  L  EP  L   + E +   +  A + R          +P I  D   ++++  N
Sbjct: 685 ESQRETLRREPRDLARFLEEVME--RDVAPDVRERFHLEVPGALPPIWMDAARLERVMAN 742

Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           +LSNA  ++P G  I +        +V++ V+D G G++  +  +    + +   S    
Sbjct: 743 LLSNAAKYSPGGQPITVRAQLQPE-QVVVSVKDLGPGLSPEDAARVFDKYFRTQKSGASD 801

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
            +G GLGL +++ +++A+ G+ ++ S P +G+      P+  
Sbjct: 802 AKGLGLGLYISRLIIEAHGGRIWVESEPGQGSTFSFSLPVAP 843



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/398 (9%), Positives = 92/398 (23%), Gaps = 45/398 (11%)

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHS-SVEKEKYDIFSQQSPPPHLRMKNKVSSL 243
           H+        A  +  + ++  L E       +V+ +    F             +    
Sbjct: 352 HIEAHRQQATAALEASEARYRGLLETTPAPLLTVDAQGLLRFVNTEAERVFGYPREELLG 411

Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSLPEQ-----EDFHTINLNQYTKKQYFGTLQNNSKE 298
            E      + L   +       E ++  +          + L+  +  +    L      
Sbjct: 412 REVEVLVPEGLFGGRSLDTGLGERAIQGRRKDGSPLSLEVRLSPVSGPEGPSVLAVVRDV 471

Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSV 357
           S                +   +     +D  P+   F  + G    ANP    L      
Sbjct: 472 SERERYLSKVQRAREEAEMQRSQVQALLDHTPVGIVFAEADGGGLVANPVAEQLLGRPLK 531

Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
                  G++ ++              ++       +A       +  +    L +    
Sbjct: 532 GVSLAMTGINPVVLTTDGKPARREDVPIVRALLTGQLAGPEEFLILHPDGSR-LPVLMTA 590

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEI------------------EVMQLCSIL- 458
                   +         +        R  E                    V  L   L 
Sbjct: 591 APVFGPSGKVRGVVSTAQDVTTRHELDRLREEYVSLISHDLRNPLHTISLRVGLLRRALR 650

Query: 459 -------EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
                  E+ ++ I     +  +   N  +  L      +  R+          P  +  
Sbjct: 651 EQNLEREESMTEAI-----QRSVAWMNTMIEDLLEGSRLESQRETLRR-----EPRDLAR 700

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
           +L E++  D+   + +          L  + +   +L 
Sbjct: 701 FLEEVMERDVAPDV-RERFHLEVPGALPPIWMDAARLE 737



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/260 (9%), Positives = 67/260 (25%), Gaps = 35/260 (13%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +DA G L+ ++ E  +  G    +++G  + +V     +     +   L  +        
Sbjct: 385 VDAQGLLRFVNTEAERVFGYPREELLGREV-EVLVPEGLFGGRSLDTGLGERA-----IQ 438

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +G+ L + + L+           SG  G  ++ V R  ++      ++ +      
Sbjct: 439 GRRKDGSPLSLEVRLS---------PVSGPEGPSVLAVVRDVSERERYLSKVQRAREEAE 489

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH------------------- 249
             +    ++                  + N V+                           
Sbjct: 490 MQRSQVQALLDHTPVGIVFAEADGGGLVANPVAEQLLGRPLKGVSLAMTGINPVVLTTDG 549

Query: 250 -KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
                        L + + + PE+      + ++         +   S +    +S    
Sbjct: 550 KPARREDVPIVRALLTGQLAGPEEFLILHPDGSRLPVLMTAAPVFGPSGKVRGVVSTAQD 609

Query: 309 PSLSAYFDEGENLTPETVDK 328
            +     D         +  
Sbjct: 610 VTTRHELDRLREEYVSLISH 629


>gi|255527743|ref|ZP_05394597.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           carboxidivorans P7]
 gi|296187582|ref|ZP_06855976.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Clostridium carboxidivorans P7]
 gi|255508559|gb|EET84945.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           carboxidivorans P7]
 gi|296047539|gb|EFG86979.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Clostridium carboxidivorans P7]
          Length = 591

 Score =  318 bits (815), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 85/371 (22%), Positives = 161/371 (43%), Gaps = 27/371 (7%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            ++    ++L SIL + + GI +I+    I+ +N AV K+        +       +   
Sbjct: 237 SQLNYRNLELNSILNSITYGILVIDINWNIILSNPAVIKILRLDKNLNIGDNLKNSI--- 293

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-----CYSLTMH 559
               + + + E    ++ +  EK       ++K+  +   +      +        + + 
Sbjct: 294 ESQELYNLIEETFDNNVHK--EKELGLRDNDDKIYKVYTKLIDYDVENLVYEKGIVIILQ 351

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           DISE K  +                +S+F+A VSHE++TPLT IIGF + +K +      
Sbjct: 352 DISEIKHLE--------------KMRSEFVANVSHELKTPLTTIIGFVDTLKRKPG--ED 395

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
             +   +   I      +  ++ D+L +S +E+   + + E V++ + + + + ++   A
Sbjct: 396 KEKRQRFLGIISEEVERLKRLIEDILLLSHLENQSSSNNLEEVNIYKELDDILYMLTPSA 455

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
           N K I I      N    +      KQ  +N++ NAI +T   G I +S     N  +I+
Sbjct: 456 NRKNIGINLIIEKNFTLYVKSKDWFKQAVMNLIDNAIKYTQPEGHINVSAYIKENNALII 515

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V+D GVG+   ++ +  + F ++  S+     GTGLGL + K +V    G  Y+ S   
Sbjct: 516 -VKDNGVGIPKEDISRVFERFYRVDKSRSRSEGGTGLGLAIVKHIVSELDGSIYLNSELN 574

Query: 800 KGTLIEIIFPL 810
           KG+   I  PL
Sbjct: 575 KGSEFIIQLPL 585


>gi|168238030|ref|ZP_02663088.1| PAS fold family protein [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|194734174|ref|YP_002116278.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|204931174|ref|ZP_03221968.1| PAS fold family protein [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|194709676|gb|ACF88897.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|197289156|gb|EDY28525.1| PAS fold family protein [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|204319941|gb|EDZ05147.1| PAS fold family protein [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|322615332|gb|EFY12253.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315996572]
 gi|322618309|gb|EFY15200.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-1]
 gi|322622886|gb|EFY19730.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-3]
 gi|322626792|gb|EFY23589.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-4]
 gi|322631361|gb|EFY28121.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-1]
 gi|322635372|gb|EFY32086.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-2]
 gi|322647057|gb|EFY43558.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322651580|gb|EFY47953.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           OH_2009072675]
 gi|322655052|gb|EFY51363.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322657655|gb|EFY53923.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str. 19N]
 gi|322664151|gb|EFY60349.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           81038-01]
 gi|322667434|gb|EFY63596.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MD_MDA09249507]
 gi|322674682|gb|EFY70774.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str. 414877]
 gi|322675685|gb|EFY71758.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str. 366867]
 gi|322682321|gb|EFY78344.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str. 413180]
 gi|322684924|gb|EFY80922.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str. 446600]
 gi|323195871|gb|EFZ81042.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           609458-1]
 gi|323198988|gb|EFZ84085.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           556150-1]
 gi|323204312|gb|EFZ89321.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str. 609460]
 gi|323207659|gb|EFZ92606.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           507440-20]
 gi|323211288|gb|EFZ96132.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str. 556152]
 gi|323214770|gb|EFZ99519.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB101509-0077]
 gi|323221250|gb|EGA05676.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB102109-0047]
 gi|323224008|gb|EGA08301.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB110209-0055]
 gi|323230342|gb|EGA14461.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB111609-0052]
 gi|323233318|gb|EGA17412.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009083312]
 gi|323239355|gb|EGA23405.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009085258]
 gi|323242394|gb|EGA26420.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315731156]
 gi|323246904|gb|EGA30870.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2009159199]
 gi|323254163|gb|EGA37983.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008282]
 gi|323255280|gb|EGA39057.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008283]
 gi|323262743|gb|EGA46299.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008284]
 gi|323264053|gb|EGA47561.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008285]
 gi|323269439|gb|EGA52894.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008287]
          Length = 778

 Score =  318 bits (815), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 85/435 (19%), Positives = 178/435 (40%), Gaps = 17/435 (3%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L +          +L  +Q     +     I   +  +   +     ++ E
Sbjct: 81  EESRQRLSRLVQKLEEMRERDLKL-NVQLKDNIAQLNQEIADREKAEAELHETFEQLKVE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             +    + ++E +   L S L+A+ D +   N +      NRA+  L G   + ++   
Sbjct: 140 IKEREEAQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCY 554
                       +     ++   ++  T E+        +    +R +    ++      
Sbjct: 200 PEDVYSPEAAEKVIETDEKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGL 259

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+        +   E+ S  K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 260 MGFGRDITERKR-------YQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTD 312

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     +Y   I  S   + +I ND++D+ K+E  K+ L  +PV     +++  +L
Sbjct: 313 LTA----EQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFMADLENL 368

Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
             L A +K +         +P  ++ D   ++QI  N++SNA+ FT  G Q+ +   +  
Sbjct: 369 SGLQAQQKGLRFVLEPTLPLPHKVITDGTRLRQILWNLISNAVKFTQQG-QVTVRARYDE 427

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMGKF 792
            + +   V D+G+G+   E +K    + Q+ +S   +   GTG+GL +++ +     G  
Sbjct: 428 GDMLHFEVEDSGIGIPQDEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDI 487

Query: 793 YIFSTPAKGTLIEII 807
            + S P KG+   + 
Sbjct: 488 TVSSLPGKGSTFTLT 502



 Score = 40.4 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 27/183 (14%), Positives = 55/183 (30%), Gaps = 7/183 (3%)

Query: 36  TEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYL 95
            ++ K E   H++FEQ     + +E         S     F      + F  N D     
Sbjct: 120 ADREKAEAELHETFEQLKVEIKEREEAQIQLEQQSSFLRSFLDASPDLVFYRNEDKE--F 177

Query: 96  KEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN-TWYGKTTLWPIEG 154
              +  +    G    +++ ++  DV      +      + + R N +   +  L   +G
Sbjct: 178 SGCNRAMELLTGKSEKQLVHLKPEDVYSPEAAEKVIETDEKVFRHNVSLTYEQWLDYPDG 237

Query: 155 TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214
                  ++  +P Y R  +  G  GFG           +   +R  +  +         
Sbjct: 238 RKACF--EIRKVPYYDRVGKRHGLMGFG--RDITERKRYQDALERASRDKTTFISTISHE 293

Query: 215 SSV 217
              
Sbjct: 294 LRT 296


>gi|16078417|ref|NP_389236.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221309216|ref|ZP_03591063.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221313544|ref|ZP_03595349.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221318466|ref|ZP_03599760.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|321315107|ref|YP_004207394.1| two-component sensor histidine kinase [Bacillus subtilis BSn5]
 gi|81341919|sp|O31661|KINE_BACSU RecName: Full=Sporulation kinase E; AltName: Full=Sensor histidine
           kinase E
 gi|2633724|emb|CAB13226.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|291483886|dbj|BAI84961.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           natto BEST195]
 gi|320021381|gb|ADV96367.1| two-component sensor histidine kinase [Bacillus subtilis BSn5]
          Length = 738

 Score =  318 bits (815), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 108/740 (14%), Positives = 242/740 (32%), Gaps = 69/740 (9%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTT 148
           D    + + +E   + +   +  +    + D    +  D  N  +    K+   W     
Sbjct: 48  DNEMRIVQANEATERMLQVDSEDLKKRSVLDFLFSIPKDELNLSVKKFFKKGFLWKEVPI 107

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                 T     I+  A      +        F ++                ++ F  L 
Sbjct: 108 RLDCGATKY---IEFLAKRGIGEDF------FFVVMRDISSKKILEREFSMNEQLFKDLF 158

Query: 209 EIKKGHSSVEKEKYDIFSQQSPP--PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
           +       +  +                   N++S L+ Y        K           
Sbjct: 159 DRAVDGIVLFDKDGGFIDANLSFCKSFEINHNELSHLSLYEFIDSGSRKDFDNIWKALNR 218

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE-YLSHRNHPSLSAYFDEGENLTPET 325
               + E    +        ++  T    S              S+     + E    E 
Sbjct: 219 KGKAKGELPVKLRSGVQKLFEFTITSNIISGFYMSIMRDITEKRSMELQLFKSEERFREI 278

Query: 326 VDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD------- 377
            +       ++S  G +  AN S   + +   ++ +        L+D+ +          
Sbjct: 279 FENAMDAIIIWSNDGRIVKANQSACKIFEL-PMNLLLKRKLCDFLVDSQQKYSITKRKYA 337

Query: 378 --NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
                 + ++    +                 ++   +                      
Sbjct: 338 KYGEIREELLFQMGNGQFKELEFTSKRTILENQHLTIL---------------------R 376

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
              D +  ++++    ++   +   + DG  + + +  I+  N   S + G   E+I + 
Sbjct: 377 NVSDRKRMEKELRESELKFRKVFNGSMDGNVLFDNQYRIIDANPLASHILGLSHEEIKQH 436

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555
                +       +     +I   +    ++              L    K+    +   
Sbjct: 437 SLLDIISAYEIENLASPARQINFDE----MDNEIPFLLSSGDNRKLEFSFKRNIIQNMNL 492

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
               D++E K+ + +L  +  +         +  A ++HEIR P+TA+ GF +++K    
Sbjct: 493 AIFKDVTERKELEERLRKSDTLHVV-----GELAAGIAHEIRNPMTALKGFIQLLKGSVE 547

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
           G      Y  Y N I      +  I+ + L ++K ++    + +E   + + + + I L+
Sbjct: 548 G-----DYALYFNVITSELKRIESIITEFLILAKPQA----IMYEEKHVTQIMRDTIDLL 598

Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
              AN   + ++    ++IP I  +   +KQ+ +NIL NAI   P GG I ++      +
Sbjct: 599 NAQANLSNVQMQLDLIDDIPPIYCEPNQLKQVFINILKNAIEVMPDGGNIFVTIKALDQD 658

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            V++ ++D G+GMT  +L++  +PF         +  GTGLGL ++  +++ + G+  + 
Sbjct: 659 HVLISLKDEGIGMTEDKLKRLGEPFYTT------KERGTGLGLMVSYKIIEEHQGEIMVE 712

Query: 796 STPAKGTLIEIIFPLYDTSH 815
           S   KGT+  I  P+   + 
Sbjct: 713 SEEGKGTVFHITLPVRQNAE 732



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 53/145 (36%), Gaps = 3/145 (2%)

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
           +  E    +    +++ E+ Q   I+  T D I I + E  I+  N A  ++     ED+
Sbjct: 12  LREELNRLKEENARLKKELNQHQVIVNNTLDAIFICDNEMRIVQANEATERMLQVDSEDL 71

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
            ++    FL       +N  + +         L K             +  + K+     
Sbjct: 72  KKRSVLDFLFSIPKDELNLSVKKFFKKG---FLWKEVPIRLDCGATKYIEFLAKRGIGED 128

Query: 553 CYSLTMHDISEWKQEKNKLSHAKKI 577
            + + M DIS  K  + + S  +++
Sbjct: 129 FFFVVMRDISSKKILEREFSMNEQL 153


>gi|189465363|ref|ZP_03014148.1| hypothetical protein BACINT_01712 [Bacteroides intestinalis DSM
           17393]
 gi|189437637|gb|EDV06622.1| hypothetical protein BACINT_01712 [Bacteroides intestinalis DSM
           17393]
          Length = 580

 Score =  318 bits (815), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 88/372 (23%), Positives = 171/372 (45%), Gaps = 13/372 (3%)

Query: 441 RINKRKMEIEVMQLCSILEATSDG--IAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
           ++ + + +  +  L +IL+       +  ++ +      N+   +LF YP ++ + +   
Sbjct: 207 KVRETEWQEHLHLLENILDNLPIAAKVKDVDNDMRYTFINKKAEELFEYPAKEAIGRT-D 265

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL-T 557
             +     +++     E++   + Q   +    +  EE+       I        + L T
Sbjct: 266 FDIMPEAATMIRKEDEELVRTGIAQFGTRRFFTNKNEERFTFQNNNIVSFSNGRKWILYT 325

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
             DI++ K  + KL  AK+ AE+ +  KS FLA +SHEIRTPL AI+GFS ++       
Sbjct: 326 AWDITDQKILERKLRLAKEEAEESNRIKSAFLANMSHEIRTPLNAIVGFSSILAED---- 381

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
           +      EY + I ++ +++L ++ND+LD+SKIE+G +   +  + +++ +SE     ++
Sbjct: 382 VSEEERTEYLSIISKNNDILLQLINDILDLSKIEAGTLEYVYANIDVNKMLSEIEQAARM 441

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737
                 + I          +  D R V Q+  N +SNA+ FT +G  I        +  +
Sbjct: 442 RQTNANVAICAVTPLEGLLLYTDQRRVTQVLNNFISNAMKFTNTGS-ITFGYEEPKDGYI 500

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
              V DTG G+   ++      F ++ + +    +GTGLGL +++ +V    G+  + S 
Sbjct: 501 RFFVTDTGTGIPPEKVADIFNRFVKLDSFK----QGTGLGLAISQNIVKELKGEIGVASE 556

Query: 798 PAKGTLIEIIFP 809
             KG+      P
Sbjct: 557 LGKGSTFWFTLP 568


>gi|73537902|ref|YP_298269.1| PAS/PAC sensor hybrid histidine kinase [Ralstonia eutropha JMP134]
 gi|72121239|gb|AAZ63425.1| PAS/PAC sensor hybrid histidine kinase [Ralstonia eutropha JMP134]
          Length = 1284

 Score =  318 bits (815), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 92/458 (20%), Positives = 175/458 (38%), Gaps = 41/458 (8%)

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
                   I A      ++ + E +L+               +            +   R
Sbjct: 306 RVAGAGLWIPALGSALILEQDMEEALSSYLSTRTVVASMAAAIMLLIGVAAWALRKSQHR 365

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            +     +L ++L+ +   + + +R    L  N ++ KL G   + +L K          
Sbjct: 366 -LAQSEERLRALLDHSPAIMHLKDRNHAFLQLNPSMEKLLGLTRDQVLGKTDRELAVMPD 424

Query: 506 PSVMNHYLTE---ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
            +     +            Q         +++ +++   +                DI+
Sbjct: 425 GTRERWEIEARVMATGRAEEQIYAMEAPEGSRQLRVIRFPVHDPTSNAVVGVGAVGIDIT 484

Query: 563 EWKQEKNKLSHA-------------------------KKIAEKESSHKSDFLARVSHEIR 597
           + ++   +L                            K  AE  +  K+ FLA +SHEIR
Sbjct: 485 DQERANRELKEMSQTLEHKVWERTRELAVANAELAKAKHEAESAAQAKASFLANMSHEIR 544

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TP+ A+IG + +  + +     +P+  +Y   I RSG  +L I+ND+LD+SKIE+GK+ +
Sbjct: 545 TPMNAVIGMAHLALSTQL----DPQQRDYVEKIQRSGQHLLGILNDILDLSKIEAGKLEI 600

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAI 716
                SL+  +     LV   A  K++ +      ++P  +  D   ++Q+ +N  +NA+
Sbjct: 601 EQIDFSLERLLRTVGDLVSERAAAKQLELVVDVQPDVPDSLRGDPLRIRQVLINFTTNAV 660

Query: 717 HFTPSGGQIIISTTHTSNEE------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
            FT  G +I+I     + E       +   VRDTG+G+    + +  + F Q  +S   R
Sbjct: 661 KFTERG-EIVIRVARCAGEHAESRVRLHFEVRDTGIGIDADAIPRLFRSFEQADSSTTRR 719

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
             G+GLGL ++  +V    G   + S   KG+      
Sbjct: 720 YGGSGLGLAISHRLVTLTGGTIGVQSELGKGSTFWFEL 757



 Score = 47.3 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 33/332 (9%), Positives = 80/332 (24%), Gaps = 18/332 (5%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNTWYGKT 147
           D +    +++  + K +G    +++G    +++ +             ++          
Sbjct: 388 DRNHAFLQLNPSMEKLLGLTRDQVLGKTDRELAVMPDGTRERWEIEARVMATGRAEEQIY 447

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNRE-FSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
            +   EG+     I     P++        G    GI              K + +   H
Sbjct: 448 AMEAPEGSRQLRVIRF---PVHDPTSNAVVGVGAVGI--DITDQERANRELKEMSQTLEH 502

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
               +    +V   +    ++       + K    +   +              L  S +
Sbjct: 503 KVWERTRELAVANAE-LAKAKHEAESAAQAKASFLANMSHEIRTPMNAVIGMAHLALSTQ 561

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
               +++    I   Q + +   G L +    S           +    +       + V
Sbjct: 562 LDPQQRDYVEKI---QRSGQHLLGILNDILDLSKIEAGKLEIEQIDFSLERLLRTVGDLV 618

Query: 327 DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
            +            L         +      D + I   L                 + +
Sbjct: 619 SERAAA------KQLELVVDVQPDVPDSLRGDPLRIRQVLINFTTNAVKFTERGEIVIRV 672

Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
            R       +  RLH    +    +    IP 
Sbjct: 673 ARCAGEHAESRVRLHFEVRDTGIGIDADAIPR 704


>gi|161521238|ref|YP_001584665.1| signal transduction histidine kinase with CheB and CheR activity
            [Burkholderia multivorans ATCC 17616]
 gi|160345288|gb|ABX18373.1| signal transduction histidine kinase with CheB and CheR activity
            [Burkholderia multivorans ATCC 17616]
          Length = 1214

 Score =  318 bits (814), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 117/689 (16%), Positives = 241/689 (34%), Gaps = 37/689 (5%)

Query: 144  YGKTTLWPIEGTNLYVPID-LAALP----IYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
                     E     + +   A  P    +  R    SG  GF       +     A  +
Sbjct: 407  RNLLIYLRKEAQQHVLEVLHYACRPDGFLLLGRAEAVSGADGFEHAGAPHLYRKVPAAKR 466

Query: 199  RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
               +    +  ++   S           Q  P      +  +          DD      
Sbjct: 467  --QQGAFPIDALRPWASQGTAPPARRAQQADPVLEAANRTALERYAPPGFVVDDKGDVVH 524

Query: 259  YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
            +    S   +    E    + L +  + +   T++    E+           ++      
Sbjct: 525  FRGDVSGFVAPASGEAS--LALPRLLQPELNVTVRTALIEAKRTGQPVRRERVAL----- 577

Query: 319  ENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
               T   ++  P+     +   + +   +   L            G   + +   + +  
Sbjct: 578  -GDTHFALEVLPLA----AEDLVPHYLVTLERLPDDAPAPQNTNTGSPHSRVQELERTVT 632

Query: 379  NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
                 +   ++    + A       +    N   ++     ++      + +  +E  + 
Sbjct: 633  TLSDELEATQAQLKSVVAEFESANEELRTANEEMLSTNEELQSANEELLLAKQELESANQ 692

Query: 439  DTRINKRKMEIEVMQL-------CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
            +      +++    QL        +++E     + +++R+  +   +     LFG P + 
Sbjct: 693  ELASLNDELKSRNEQLDRVNDDLSNLVEGIPLPVVVLDRQLRLRHFSPQAQALFGLPDDS 752

Query: 492  ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
            +  +P        +       L  ++   ++   +        E +   + +   +    
Sbjct: 753  V-GQPLAQLNSLFSAVD----LERVVQSAVQGLADVEHEYQDSEGRWWLVNVRAYRTADD 807

Query: 552  S--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                  L   DI + K        A+  AE+ ++ K +FLA VSHE+R PL  I  ++ V
Sbjct: 808  RIDGAVLAFQDIHQLKSALGTAQSAQLDAERANTAKDNFLALVSHELRAPLNVISSWAAV 867

Query: 610  IK--NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
            +   ++R  P            I R   L  ++++DLLD+S+I SG+ +L  +PV    A
Sbjct: 868  LMTASERGMPTDEQMSQRAVTTILRHCQLQAELIDDLLDVSRISSGRFSLDSKPVDFAAA 927

Query: 668  VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727
            V   +   +  A +K I++ TS   +   +  D R ++Q+A N++ NA+ FTP GG++ +
Sbjct: 928  VRTVVESHRPVAAKKEIMLATSGLQSQAVVSGDARRLQQVASNLIGNALKFTPQGGRVEV 987

Query: 728  STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
            + T      + L V D G+G+    L +    F Q   S+  +  G GLGL + K +V A
Sbjct: 988  ALT-RLGALIELSVADNGIGVKPELLPRLFDRFMQSDTSRTRQYGGLGLGLSIVKHLVTA 1046

Query: 788  NMGKFYIFST-PAKGTLIEIIFPLYDTSH 815
            + G     S    +GT + +  PL  T+ 
Sbjct: 1047 HGGTVTASSEGEGRGTRLTVRIPLLQTAA 1075



 Score = 38.1 bits (87), Expect = 5.8,   Method: Composition-based stats.
 Identities = 36/445 (8%), Positives = 102/445 (22%), Gaps = 37/445 (8%)

Query: 39   SKKENPCHDSFEQSNFTDQNQESVSNTNYLD-SENTFVFDPIPRTVRFTWNIDAHGYLKE 97
            +K+E    +          N E  S    LD   +          +     +D    L+ 
Sbjct: 683  AKQELESANQE----LASLNDELKSRNEQLDRVNDDLSNLVEGIPLPVV-VLDRQLRLRH 737

Query: 98   ISEELPKTIGNYAFKMIGMRLCDVSDILHI-DPNNHIGDLLKRQNTWYGKTTLWPIEGTN 156
             S +     G      +G  L  ++ +    D    +   ++       +      +   
Sbjct: 738  FSPQAQALFGLP-DDSVGQPLAQLNSLFSAVDLERVVQSAVQGLADVEHE----YQDSEG 792

Query: 157  LYVPIDLAALPIYSR--NREFSGFRGFGIVHVN--RVDNDPRALGKRLDKKFSHLH---- 208
             +  +++ A        +     F+    +        +      +    K + L     
Sbjct: 793  RWWLVNVRAYRTADDRIDGAVLAFQDIHQLKSALGTAQSAQLDAERANTAKDNFLALVSH 852

Query: 209  --EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
                     S         S++  P   +M  +  +    +      L  +   +     
Sbjct: 853  ELRAPLNVISSWAAVLMTASERGMPTDEQMSQRAVTTILRHCQLQAELIDDLLDVSRISS 912

Query: 267  SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
                             T  +    +    +        ++   +S      + +    +
Sbjct: 913  GRFSLDSKPVDFAAAVRTVVESHRPVAAKKEIMLATSGLQSQAVVSGDARRLQQVASNLI 972

Query: 327  DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
                   F    G +     +   L     +   +   G+   L                
Sbjct: 973  GNALK--FTPQGGRVEV---ALTRLGALIELSVADNGIGVKPELLPRLFDRFMQSDTSRT 1027

Query: 387  YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
             +     +  S   H +  +      +T     +       +    ++    +       
Sbjct: 1028 RQYGGLGLGLSIVKHLVTAHGGT---VTASSEGEGRGTRLTVRIPLLQTAATEPGTV-AT 1083

Query: 447  MEIEVMQLCSILEATSDGIAIINRE 471
               E  +L    +  S  + +++ +
Sbjct: 1084 APAESARL----DGLS--VLLVDDD 1102


>gi|168463446|ref|ZP_02697363.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|195633140|gb|EDX51554.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
          Length = 778

 Score =  318 bits (814), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 84/435 (19%), Positives = 177/435 (40%), Gaps = 17/435 (3%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L +          +L  +Q     +     I   +  +         ++ E
Sbjct: 81  EESRQRLSRLVQKLEEMRERDLKL-NVQLKDNIAQLNQEIADREKAEAELQETFEQLKVE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             +    + ++E +   L S L+A+ D +   N +      NRA+  L G   + ++   
Sbjct: 140 IKEREEAQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCY 554
                       +     ++   ++  T E+        +    +R +    ++      
Sbjct: 200 PEDVYSPEAAEKVIETDEKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGL 259

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+        +   E+ S  K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 260 MGFGRDITERKR-------YQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTD 312

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     +Y   I  S   + +I ND++D+ K+E  K+ L  +P+     +++  +L
Sbjct: 313 LTA----EQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPIDFTSFMADLENL 368

Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
             L A +K +         +P  ++ D   ++QI  N++SNA+ FT  G Q+ +   +  
Sbjct: 369 SGLQAQQKGLRFVLEPTLPLPHKVITDGTRLRQILWNLISNAVKFTQQG-QVTVRARYDE 427

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMGKF 792
            + +   V D+G+G+   E +K    + Q+ +S   +   GTG+GL +++ +     G  
Sbjct: 428 GDMLHFEVEDSGIGIPQDEQDKIFAMYYQVKDSNGGKPATGTGIGLAVSRRLAKNMGGDI 487

Query: 793 YIFSTPAKGTLIEII 807
            + S P KG+   + 
Sbjct: 488 TVSSLPGKGSTFTLT 502


>gi|326317703|ref|YP_004235375.1| multi-sensor signal transduction histidine kinase [Acidovorax
           avenae subsp. avenae ATCC 19860]
 gi|323374539|gb|ADX46808.1| multi-sensor signal transduction histidine kinase [Acidovorax
           avenae subsp. avenae ATCC 19860]
          Length = 841

 Score =  318 bits (814), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 112/637 (17%), Positives = 210/637 (32%), Gaps = 36/637 (5%)

Query: 191 NDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK 250
            D   L                      +            P ++   ++ +     +  
Sbjct: 230 TDDGRLLASSVPLPDPGGRDIASLPVFTRLLPQGEHGSYMGPGVQGPERIVAYRASRSKP 289

Query: 251 DDVLKTEKYPLL--TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
             V+  E            S P       +                  + +   +     
Sbjct: 290 LVVIVEEPQHEAFMRWLRESYPFLAMELGLVALALALTWIAWRSLRAREAARAAVDAAQD 349

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
                     E      +       F    +G L Y N  +  L        I       
Sbjct: 350 RIAR-----SERDLALLLRSVQELIFRTDRNGVLTYVNARWSALWGEPPASAIGRRL--- 401

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
                  L D    + V      R+ +A   R   ++  + +   +            + 
Sbjct: 402 -----QDLVDPEGQERVAAMLDPRSQVALRTRQLRVRSPQGDERVLDVAAVPLRAADGQV 456

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
           +   G   +  +     ++M  ++     +LE +   + + +    ++  NRA  +  G 
Sbjct: 457 LAFAGSAVDVTERERAAQRMRAQLAFQNLLLETSPQPMMLTDMAHRVVLVNRAWEQAMGC 516

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
             E I+ +                     LS     TLE+         +   +      
Sbjct: 517 TRERIVGER-RALYPGEEED------NAALSGGGGTTLERDLPYGDGTRRATRVLKAAVH 569

Query: 548 --LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
                 +     + DISE+++ +     A   AE+ +  +S F+A +SHE+RTPL AIIG
Sbjct: 570 GDYGDVTGVLSILVDISEFREAERATREAHDAAEEAARTRSQFVANMSHELRTPLQAIIG 629

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
           F+E+          + R     + I  +G  +L +VNDLLD++KIES    +H E   L 
Sbjct: 630 FAEL----GSARSQDERLGAMFSDILAAGQRMLALVNDLLDVAKIESDIGTIHLERTDLR 685

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725
             +      +      +   +R     +     AD R  +Q+  N+L+NAI F+P G  I
Sbjct: 686 GHIRTVARELGPLVASRGQDLRIDLPLHPLVARADPRRFQQVVRNVLANAIKFSPEGSCI 745

Query: 726 IISTTHTSN--EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
            +     ++  + + + V+D G G+   EL++    F Q   ++     GTGLGL + + 
Sbjct: 746 QLRAGMDADSTDTICIEVQDQGPGIPPVELDRIFDAFAQSSRTRNRS-GGTGLGLAICRK 804

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820
           +V+A  G+ +  +    G +  I  P+     P D +
Sbjct: 805 IVEALDGRIHARNVEG-GAVFRIELPVRG---PADTV 837



 Score = 78.1 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 40/384 (10%), Positives = 101/384 (26%), Gaps = 23/384 (5%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144
             +  D +G L  ++       G      IG RL D+ D    +    +  +L  ++   
Sbjct: 368 LIFRTDRNGVLTYVNARWSALWGEPPASAIGRRLQDLVDPEGQE---RVAAMLDPRSQVA 424

Query: 145 GKTTLWPIEGTNLYVPI-DLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
            +T    +        + D+AA+P+ + + +   F G  +              +     
Sbjct: 425 LRTRQLRVRSPQGDERVLDVAAVPLRAADGQVLAFAGSAV--DVTERERAAQRMRAQLAF 482

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEKYPL 261
            + L E       +    + +              + ++          ++         
Sbjct: 483 QNLLLETSPQPMMLTDMAHRVVLVNRAWEQAMGCTRERIVGERRALYPGEEEDNAAL--- 539

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
             S       + D    +  +   +     +  +  +    LS     S     +     
Sbjct: 540 --SGGGGTTLERDLPYGDGTRRATRVLKAAVHGDYGDVTGVLSILVDISEFREAERATRE 597

Query: 322 TPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSV---DDIEIAGGLSTLLDAPKLS-D 377
             +  ++           + F AN S  L T  +++    ++  A      L A      
Sbjct: 598 AHDAAEE------AARTRSQFVANMSHELRTPLQAIIGFAELGSARSQDERLGAMFSDIL 651

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
               + + L           + + TI   R +          +      +  Q+      
Sbjct: 652 AAGQRMLALVNDLLDVAKIESDIGTIHLERTDLRGHIRTVARELGPLVASRGQDLRIDLP 711

Query: 438 VDTRINKRKMEIEVMQLCSILEAT 461
           +   + +         + ++L   
Sbjct: 712 LHPLVARADPRRFQQVVRNVLANA 735


>gi|253699979|ref|YP_003021168.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21]
 gi|251774829|gb|ACT17410.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21]
          Length = 859

 Score =  318 bits (814), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 100/518 (19%), Positives = 177/518 (34%), Gaps = 47/518 (9%)

Query: 311 LSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
                   E       +      F     G     NP+   +  Y + D +        L
Sbjct: 224 ALEQERLAEAKYRGIFENAMEGIFQTTPEGKFLSCNPATAAILGYSTPDKVLEGVVNVGL 283

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
                    + +  +M  R +             +    + + +        N+  E + 
Sbjct: 284 QLYVDPQRRDELYAMMFQRQNVKNFEVEF-----RRKDGSRIWVDLSTRPAFNEEGELIH 338

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
            +G+  +  + + N+  +     +L  ++E +   I I + +G I   N    +L GY  
Sbjct: 339 IDGVIQDITERKHNEEALR----KLSQVVEQSPVSIVITDTQGRIEFVNPKFVQLTGYSP 394

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
            ++L            P   +  L E +        E   L   K+ +L S    I  + 
Sbjct: 395 GEVLGLNPRFLNSGKAPIEKSRKLWETIRAGK--VWEGEFLNRKKDGELFSEHATISPIR 452

Query: 550 FSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
                   +     DI+E K  + +L  ++K+              V+H+    L+ I+G
Sbjct: 453 NKEGVITHFLAIKEDITERKLLEAQLFQSQKM-----ESIGRLAGGVAHDFNNMLSVILG 507

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
            ++     R    G P + +    I ++G     I   LL  S+ E     +    V+L+
Sbjct: 508 SAQ--LAMRCVTEGTPVWQD-LEQIVQAGKRSSQITRQLLAFSRKE----IIAPREVNLN 560

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725
           E  +E    +      + I +  + A  +  I AD   + QI +N+  NA     +GG +
Sbjct: 561 EHFTEMQKTL-GRLIGEDIRMNFNPAPGLWTIDADTTQLDQILVNLAVNARDAMGNGGVL 619

Query: 726 IISTTHTS--------------NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
            I T +                 E V L V D G GM    L +  +PF          G
Sbjct: 620 TIETANVRVDRSYSQFHLDASLGEYVQLAVSDNGCGMDRETLAQIFEPFFTTK----EVG 675

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +GTGLGL     +V  + G   ++S P  GT  +I FP
Sbjct: 676 KGTGLGLATVYGIVRQHNGFINVYSEPGHGTTFQINFP 713



 Score = 74.7 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 23/258 (8%), Positives = 75/258 (29%), Gaps = 13/258 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI---GDLLKRQNT 142
            +     G     +      +G      +   + +V   L++DP         + +RQN 
Sbjct: 246 IFQTTPEGKFLSCNPATAAILGYSTPDKVLEGVVNVGLQLYVDPQRRDELYAMMFQRQNV 305

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
              +      +G+   + +DL+  P ++   E     G  ++             ++L +
Sbjct: 306 KNFEVEFRRKDGS--RIWVDLSTRPAFNEEGELIHIDG--VIQDITERKHNEEALRKLSQ 361

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
                        +  + + +  + +          +V  L   + +       +   L 
Sbjct: 362 VVEQSP--VSIVITDTQGRIEFVNPKFVQLTGYSPGEVLGLNPRFLNSGKAPIEKSRKLW 419

Query: 263 TSEESSLPEQEDF--HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
            +  +    + +F     +   +++      ++N       +L+ +   +     +    
Sbjct: 420 ETIRAGKVWEGEFLNRKKDGELFSEHATISPIRNKEGVITHFLAIKEDITERKLLEAQLF 479

Query: 321 LTP--ETVDKCPIPFFVY 336
            +   E++ +        
Sbjct: 480 QSQKMESIGRLAGGVAHD 497


>gi|169832041|ref|YP_001718023.1| multi-sensor signal transduction histidine kinase [Candidatus
           Desulforudis audaxviator MP104C]
 gi|169638885|gb|ACA60391.1| multi-sensor signal transduction histidine kinase [Candidatus
           Desulforudis audaxviator MP104C]
          Length = 571

 Score =  318 bits (814), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 97/583 (16%), Positives = 208/583 (35%), Gaps = 52/583 (8%)

Query: 237 KNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYT--KKQYFGTLQN 294
            +   +  E    ++   +     +    +   P       +N       ++Q   +   
Sbjct: 32  ADYYFAAREKELLQEAEARAGILAVEAGRQRWGPGGNILSLLNERLVVLDRRQIEASHLG 91

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK--CPIPFFVYSHGNLFYANPSFLLLT 352
                  +L       L A            ++K    +   +   G +  A      + 
Sbjct: 92  RGPGPRSWLGPEESSRLLAGETTATRRYLPHIEKEVLAVAAPIRHDGEVTGA------VL 145

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
            +  V D++        +          +   + +   R+       +  +  +      
Sbjct: 146 VFAPVADLDATVTTVRRITLSAAGVAVLLAMGLSFWLSRSLSEPLLEMSRVSVDMARGRF 205

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG 472
              +  ++ ++         +    +D  +   ++  E  +L S++   ++G+  ++  G
Sbjct: 206 DRRVTVQRKDEIGRLAENLNLLAGSLDRSVG--ELAREKGKLESVVANMAEGVVAVDSSG 263

Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
            ++ TN     +                 +  T   +     E+L+   R  +E      
Sbjct: 264 EVILTNAPARNIL----------------KNGTVPELTTLFQEVLANGERGAVEIDL--- 304

Query: 533 TKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
                 L  +    +    +       + DI+  +Q +                + DF+A
Sbjct: 305 --NGAHLLAQCSPLRHGDGAVFGAVAVLQDITALRQLE--------------QMRRDFVA 348

Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650
            VSHE+RTPLT+I G  E + +   G +       Y          +  +V DLLD++ +
Sbjct: 349 NVSHELRTPLTSIQGIIEGLID---GVIPAAEAGRYLRVAHGESLRMNRLVQDLLDLAAL 405

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710
           E+G+ +     V L E +      +Q   +EK + IR     ++P +LA+   ++Q+  N
Sbjct: 406 EAGRADWELHAVELGEILDRVEIRLQAPRSEKGLAIRREVPPDLPPLLANENRLEQVLTN 465

Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           ++ NA+ F+P GG+I ++     +  + + VRD G G+   +L      F ++  S+   
Sbjct: 466 LVENAVRFSPPGGEITVAAEKRPHNRITVTVRDQGPGIPPEDLPHVWDRFYRVEKSRARE 525

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
             GTGLGL + K +V+A  G+  + S+P +G       P  D+
Sbjct: 526 TGGTGLGLAIVKQIVEAQGGEVAVESSPGEGASFFFTLPAADS 568


>gi|167855126|ref|ZP_02477898.1| polynucleotide phosphorylase/polyadenylase [Haemophilus parasuis
           29755]
 gi|167853761|gb|EDS25003.1| polynucleotide phosphorylase/polyadenylase [Haemophilus parasuis
           29755]
          Length = 744

 Score =  318 bits (814), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 95/399 (23%), Positives = 177/399 (44%), Gaps = 14/399 (3%)

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
           + ++       N +            ++E +   L S  +A+ D +   N+ G  L  NR
Sbjct: 81  ERSRIRLEQSLNDLSLLREQDARLNVELEQQAEFLRSFFDASPDLVFYRNQHGEFLGCNR 140

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
           A+  L G   +++L         + T  ++     + L  +   T E+    S  +    
Sbjct: 141 AMEVLTGRSEKELLHLTPKDIYPKETAKLILDTDRDTLISNTGVTYEQWIRHSNNKLSCF 200

Query: 540 SLRIIIK--KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
            +R +    ++    C      DI+E K+        +++ EK S  KS  +A +SHE+R
Sbjct: 201 EIRKVPYYDRVNECHCIMGFGRDITERKR-------YQEMIEKNSRDKSTLMATISHELR 253

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TPL  IIG S ++           +  EY   I+ S   +  I +D++D+ KI+S ++ L
Sbjct: 254 TPLNGIIGLSRILLEGELSA----QQREYLKTINISAVSLGHIFSDIIDLEKIDSRRIEL 309

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAI 716
               V   + +S       L A +K+I     + +N+P  +  D   + QI  N+++NA+
Sbjct: 310 FRSEVEFSQLISNISHFANLMAEQKKIKFTIQYDDNLPDFVCVDNARLSQILWNLVNNAV 369

Query: 717 HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
            FTPSGG+I +      ++     ++D+G+G+   E  K    F Q  NSQ  + +G+G+
Sbjct: 370 KFTPSGGEISLKVERRDHDHYAFILKDSGIGIKKSEQRKIFAMFYQSENSQGKKAQGSGI 429

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
           GL ++K +     G   + S   +G++  +I    + +H
Sbjct: 430 GLAISKRIARLMGGDLTVESELNQGSVFTLIIQADEANH 468


>gi|94313527|ref|YP_586736.1| histidine protein kinase [Cupriavidus metallidurans CH34]
 gi|93357379|gb|ABF11467.1| histidine protein kinase [Cupriavidus metallidurans CH34]
          Length = 1309

 Score =  318 bits (814), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 121/691 (17%), Positives = 224/691 (32%), Gaps = 36/691 (5%)

Query: 144  YGKTTLWPIEGTNLYVPIDLAALPIYSRNR-EFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
                     + T   V +  +   +    R E  G +   I        D  A GK  D 
Sbjct: 351  SALPLAHLRDLTGKRVVVTDSGG-VGDFTRHEVPGVKLV-IAPNVHAGLDMVAQGKA-DA 407

Query: 203  KFSHLHEIKKGHSSVEKEKYDIFSQQSP---PPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
                +             K  +                     L         VL  ++ 
Sbjct: 408  YVDDIVSTDIELRRNFAGKLRVIGSGEHMLNSGFAVNPALAGRLLPLINRALSVLPEDRR 467

Query: 260  PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL----SHRNHPSLSAYF 315
              + +  +      +   +N          G +                           
Sbjct: 468  LDIQNRYAGTSYVLETSWLNALWRASPILIGMMVILLILLRSQRLYRKEASIRREAEREL 527

Query: 316  DEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
                      +D  P+P  V    G     N     +T     D +              
Sbjct: 528  STQLRFQSTLMDAIPLPIVVSNKDGRYLRLNAFSEWITGRSWADIVGHTTTEVHFWGEAN 587

Query: 375  LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
             +           R+  T      +L            + +   +               
Sbjct: 588  SARVEEASQ----RAIDTGRLVQLQLQLQDKEGVERHFLLY--IKPFVGENNVEGLINTG 641

Query: 435  PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII----LSTNRAVSKLFGYPVE 490
             +  + R  + +      +L  +       +    + G +    +  +   + LFG   E
Sbjct: 642  VDVTEIRQAELEAREAQGRLADVTRYLPIMVFQARQSGHLGRGPIWVSGNTTDLFGVDAE 701

Query: 491  DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE-KLLSLRIII-KKL 548
             +   P T+    +    M+       +    Q L         E  +   L+ +   ++
Sbjct: 702  TLAVNPPTIEACVHPDDRMSLRRAIARARRELQVLNHEVRLRKLEGFRWTRLQAVPRIEI 761

Query: 549  PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
              S  ++    D     +    L+ AK+ AE  S  K  FLA +SHEIRTP+  ++G +E
Sbjct: 762  DGSVLWNGYWRDTQAEHERAAALASAKESAEAASRAKDSFLAMMSHEIRTPMNGVLGLAE 821

Query: 609  VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
            ++ +    P  +         +  S + +L I++D+LD SKIE+G++++   P+ + E  
Sbjct: 822  LLSHTSLTPEQSAT----VGMMGDSASALLQILDDILDYSKIEAGRIDIESRPLDIRELC 877

Query: 669  SEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIII 727
               I ++   A+EK + +R     ++  + L D   ++Q+  N+LSNAI FT SG  + +
Sbjct: 878  DCTIGVLATRAHEKGLHLRLHVGADVAAVVLGDSVRLRQVLFNLLSNAIKFTESG-MVSV 936

Query: 728  STTH----TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
            S        + + +  RV DTG+G+      +   PF Q   S   R  GTGLGL + + 
Sbjct: 937  SAEVVQETETAQTLRWRVTDTGIGIEPQNQSRLFDPFVQADTSTTRRFGGTGLGLAICRR 996

Query: 784  MVDANMGKFYIFSTPAKGTLIEI--IFPLYD 812
            +V    G+  + S P  GT +E+    P+ +
Sbjct: 997  LVQLMGGRITLKSEPGIGTQVEVELSLPVKE 1027


>gi|332382337|gb|AEE67184.1| virulence sensor protein [Bordetella pertussis CS]
          Length = 1238

 Score =  318 bits (814), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 113/587 (19%), Positives = 214/587 (36%), Gaps = 31/587 (5%)

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
               +        + ++ ES L     +    +   T++     +  +  +       RN
Sbjct: 363 LRSGEADMAGALFVNSARESFLSFSRPYVRNGMVIVTRQDPDAPVDADHLDGRTVALVRN 422

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLF-----------YANPSFLLLTKYKS 356
             ++             T D       + ++G              Y N  F    +  S
Sbjct: 423 SAAIPLLQRRYPQAKVVTADNPSEAMLMVANGQADAVVQTQISASYYVNRYFAGKLRIAS 482

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT-- 414
             D+  A          +    + +   +   S+    +  +R      +     A    
Sbjct: 483 ALDLPPAEIALAT-TRGQTELMSILNKALYSISNDELASIISRWRGSDGDPRTWYAYRNE 541

Query: 415 ---FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471
               I     +          +  +    +  +R +  ++  +  +++ T + I + ++E
Sbjct: 542 IYLLIGLGLLSALLFLSWIVYLRRQIRQRKRAERALNDQLEFMRVLIDGTPNPIYVRDKE 601

Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH----YLTEILSLDLRQTLEK 527
           G +L  N A    FG   + +L K          P++        LT + +    +  ++
Sbjct: 602 GRMLLCNDAYLDTFGVTADAVLGKTIPEANVVGDPALAREMHEFLLTRVAAEREPRFEDR 661

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
                 +   +    I                 DI+E  +   +L  AK+ A+  +  K+
Sbjct: 662 DVTLHGRTRHVYQWTIPYGDSLGELKGIIGGWIDITERAELLRELHDAKESADAANRAKT 721

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
            FLA +SHEIRTP+ AIIG  E+       P       +       S   +L+++ D+LD
Sbjct: 722 TFLATMSHEIRTPMNAIIGMLELAL---LRPTDQEPDRQSIQVAYDSARSLLELIGDILD 778

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN-NIPRILADLRSVK 705
           I+KIE+GK +L     +L      AI +    A +K I +        +  +L D   +K
Sbjct: 779 IAKIEAGKFDLAPVRTALRVLPEGAIRVFDGLARQKGIELVLKTDIVGVDDVLIDPLRMK 838

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNE---EVILRVRDTGVGMTNYELEKAMKPFGQ 762
           Q+  N++ NAI FT  G Q++++ T   +     V   V DTG G++  +  +  KPF Q
Sbjct: 839 QVLSNLVGNAIKFTTEG-QVVLAVTARPDGDAAHVQFSVSDTGCGISEADQRQLFKPFSQ 897

Query: 763 IPNSQ-QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           +  S       GTGLGL +++ +V+   G   + S P  GT + +  
Sbjct: 898 VGGSAEAGPAPGTGLGLSISRRLVELMGGTLVMRSAPGVGTTVSVDL 944



 Score = 51.2 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/234 (10%), Positives = 57/234 (24%), Gaps = 16/234 (6%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D  G +   ++    T G  A  ++G  + + + +        + + L  +     +   
Sbjct: 599 DKEGRMLLCNDAYLDTFGVTADAVLGKTIPEANVVGDPALAREMHEFLLTRVAAEREPRF 658

Query: 150 WPIE----GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
              +    G   +  +    +P      E  G  G  I        +         +   
Sbjct: 659 EDRDVTLHGRTRH--VYQWTIPYGDSLGELKGIIGGWI--DITERAELLRELHDAKESAD 714

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
             +  K    +    +                 +++ L       D       Y    S 
Sbjct: 715 AANRAKTTFLATMSHEIRTPMNAIIGML-----ELALLRPTDQEPDRQSIQVAYDSARSL 769

Query: 266 ESSLPEQEDFHTINLN---QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
              + +  D   I          +     L   +   F+ L+ +    L    D
Sbjct: 770 LELIGDILDIAKIEAGKFDLAPVRTALRVLPEGAIRVFDGLARQKGIELVLKTD 823


>gi|254464412|ref|ZP_05077823.1| multi-sensor hybrid histidine kinase [Rhodobacterales bacterium
           Y4I]
 gi|206685320|gb|EDZ45802.1| multi-sensor hybrid histidine kinase [Rhodobacterales bacterium
           Y4I]
          Length = 827

 Score =  318 bits (814), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 95/384 (24%), Positives = 166/384 (43%), Gaps = 13/384 (3%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           R    +      ++ +++ ++ D I ++  +G I + N A   +FGY  E+ + +P    
Sbjct: 206 REMAIERSRAAARMEAMIASSLDAILVVGADGRIQAFNGAAESVFGYSREEAVGQPMVNL 265

Query: 501 LEQNT----PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL--RIIIKKLPFSSCY 554
           +  +             +      +            K  +L  +   + + +      +
Sbjct: 266 IVPDHLQEAHKAGMKRFSRTGETRVAGKGRLQLEARRKSGELFPVELSVSVSQSGSEMVF 325

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
              + DISE  + + +L  A+  A      K + L  +SHE+RTPLT ++G  ++I+   
Sbjct: 326 VSFLRDISERIEVEEELRRARDDALAGERAKHNLLTVMSHEMRTPLTGVLGAIDLIE--- 382

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
            G         Y   +  SG L+L  VND+L++S++ESG  +       LDE VS  +  
Sbjct: 383 -GTGLTQEQRRYLRAMRVSGELLLHHVNDVLELSRLESGADSEKLRIFDLDELVSGLVES 441

Query: 675 VQLYANEKRILIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST-THT 732
            Q  A  + I +    +    P +    R+V+Q+ LN++ NA+ FT  G  + +     +
Sbjct: 442 QQASAKGQGIDLSLHCSLGGKPVVAGRPRAVQQVLLNLIGNALKFTREGA-VSVDVMRLS 500

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
             E V   V DTG G+   +L++  + F  +  S     EGTGLGL + K +VDA  G  
Sbjct: 501 DGETVEFSVADTGQGIAPEDLDRIFEDFITLDASYGRGSEGTGLGLAITKRLVDAMGGTI 560

Query: 793 YIFSTPAKGTLIEIIFPLYDTSHP 816
              S P +G+L  I   L     P
Sbjct: 561 TCESEPGEGSLFTISLALPPAKAP 584



 Score = 46.2 bits (108), Expect = 0.025,   Method: Composition-based stats.
 Identities = 34/368 (9%), Positives = 94/368 (25%), Gaps = 21/368 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-----NHIGDLLKRQNTW 143
           + A G ++  +       G    + +G  + ++    H+               + +   
Sbjct: 233 VGADGRIQAFNGAAESVFGYSREEAVGQPMVNLIVPDHLQEAHKAGMKRFSRTGETRVAG 292

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
            G+  L     +    P++L+     S++     F  F  +       +     +R    
Sbjct: 293 KGRLQLEARRKSGELFPVELSVS--VSQSGSEMVFVSF--LRDISERIEVEEELRRARDD 348

Query: 204 FSHLHEIKKGHSSVEKEKYD------IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257
                  K    +V   +        + +          + +   L       + +L   
Sbjct: 349 ALAGERAKHNLLTVMSHEMRTPLTGVLGAIDLIEGTGLTQEQRRYLRAMRVSGELLLHHV 408

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
              L  S   S  + E     +L++           +   +  +   H +          
Sbjct: 409 NDVLELSRLESGADSEKLRIFDLDELVSGLVESQQASAKGQGIDLSLHCSLGGKPVVAGR 468

Query: 318 GENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
              +    ++           G +       + + +    + +E +   +    AP+  D
Sbjct: 469 PRAVQQVLLNLIGNALKFTREGAVS------VDVMRLSDGETVEFSVADTGQGIAPEDLD 522

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
                 + L  S       +     I     +++  T     +  +         + P  
Sbjct: 523 RIFEDFITLDASYGRGSEGTGLGLAITKRLVDAMGGTITCESEPGEGSLFTISLALPPAK 582

Query: 438 VDTRINKR 445
              R  ++
Sbjct: 583 APPRQAEQ 590


>gi|322385036|ref|ZP_08058686.1| sensor histidine kinase VicK [Streptococcus cristatus ATCC 51100]
 gi|321270946|gb|EFX53856.1| sensor histidine kinase VicK [Streptococcus cristatus ATCC 51100]
          Length = 454

 Score =  318 bits (814), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 93/403 (23%), Positives = 173/403 (42%), Gaps = 34/403 (8%)

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDT-RINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
           +         PE         +  +  R+    +E E  +L SIL   +DG+   NR G 
Sbjct: 56  YSEVLDMQGSPEITDMTNSINDLSEVIRLTHENLEQETKRLSSILSYMTDGVLATNRRGQ 115

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
           I++ N   +K  G   +D+L       L+      +   +T++  L +    E       
Sbjct: 116 IITINDMATKQLGVKRDDVLNTSILDLLDIADEYDLRELITKVPELTIDSQDE------- 168

Query: 534 KEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
              + +SLR+    +   S +       +HD +E  +E+ +              +  F+
Sbjct: 169 -NGEYVSLRVRFALIRRESGFISGLVAVLHDTTEQDKEERE--------------RRLFV 213

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
           + VSHE+RTPLT++  + E +     G L  P   E+        N ++ +V DLL +S+
Sbjct: 214 SNVSHELRTPLTSVKSYLEAL---DDGALSEPVAPEFVKVSLTETNRMMRMVTDLLSLSR 270

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLV---QLYANEKRILIRTSFANNIPRILADLRSVKQ 706
           I++   +L  E  +    ++  ++     +     K+  I   ++     +  D   + Q
Sbjct: 271 IDNNTSHLDVELTNFTAFITYILNRFDKIKNQDETKKYEIIRDYSITPIWVEIDTDKMTQ 330

Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
           +  NI++NAI ++P GG I +S   T   ++IL + D G+G+   +L K    F ++  +
Sbjct: 331 VIDNIMNNAIKYSPDGGTITVSVRTTDV-QLILSISDEGLGIPKQDLPKIFDRFYRVDKA 389

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +     GTGLGL +AK ++  + G  +  S   KG+   I+ P
Sbjct: 390 RSRAQGGTGLGLAIAKEIIKQHHGFIWAKSEYGKGSTFTIVLP 432


>gi|169334382|ref|ZP_02861575.1| hypothetical protein ANASTE_00782 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259099|gb|EDS73065.1| hypothetical protein ANASTE_00782 [Anaerofustis stercorihominis DSM
           17244]
          Length = 1210

 Score =  318 bits (814), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 131/773 (16%), Positives = 248/773 (32%), Gaps = 85/773 (10%)

Query: 96  KEISEELPKTIGNYAFK-MIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPIE 153
             +++     IG           + D      ++  +  I + L        K  +  I+
Sbjct: 175 LYVNDGYLNIIGYDRNNYDTNSSIKDKVHPDDLNALSLAIKECLMSGKLMEFKLRVIDIK 234

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK- 212
           G   Y  I+  A  I       +    F +V              + ++      E  + 
Sbjct: 235 G--KYHWINAKAHRIDDYPGTNNPVI-FALVTDVTEQRRAEKALIKSEEAKRKTFEELRK 291

Query: 213 ------------------------GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA 248
                                       V  E   +            K  V +L  Y  
Sbjct: 292 KNQQIELILSSINGGLASYECDTYDFLYVSDELCKMLGYSKEEFLSVTKGNVLNLIYYID 351

Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE---YLSH 305
               V    K       E +   +      + +           +++  +      +L  
Sbjct: 352 KVKAVKDYHKS--FLENEKNYAVKYRVVCKDGSLKWILDSGYKSKSDEGKDIINCLFLDI 409

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYS----HGNLFYANPSFLLLTKYKSVDDIE 361
                 +    E ++      +        Y            N   L +  Y++ ++  
Sbjct: 410 DELQQSTLKVTEQKDFLDSIYNSVMCGILRYHNVGGEFAFIMMNNEALKIFGYETEEECL 469

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
             G    L        +  +  +   R      +   R   I+        +        
Sbjct: 470 KLGREEFLNRVYYEDRDYILSKINSLRDVGENFSEEYR---IKRPNGEIRWVYATSEMVK 526

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIIL----- 475
           +     + Q  +  +  D +    K+EIE  +L  I+    D +  I+ + G  +     
Sbjct: 527 DAKGNILNQRVMM-DITDRK----KLEIE-ERLSGIIRTAYDVVVDIDLKTGEYIENDFS 580

Query: 476 --------STN--RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
                     N  R+  ++  + ++    K     L       +     ++        L
Sbjct: 581 EMSYFKKNYGNYKRSFLQMLRHDIDHRDTKYIANTLGIKNLRHIAENKQDVRK------L 634

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN-------KLSHAKKIA 578
                    E K +    I       +  +L + DI++  +++         L  A K A
Sbjct: 635 SCKYRLREDENKWIEATAIFNSGQNRNRINLIIRDITDQIKQEELIEAQNRALEKALKKA 694

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
              +  KS FL+ +SH+IRTP+  I+G + V K          R  +  + ID S   +L
Sbjct: 695 NAANEAKSLFLSSMSHDIRTPMNGIVGMTTVAKESI---KNEDRIKDCLDKIDVSSKHLL 751

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
            ++ND+LD+S+IESG + L  E V++ +   + ++++   A EK   IR         I+
Sbjct: 752 SLINDILDMSRIESGNLILKEENVNISDLFHDTLTIILSQAKEKNQNIRFDIDVEHENII 811

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIII---STTHTSNEEV--ILRVRDTGVGMTNYEL 753
            D   ++Q+ +NILSNAI FT   G I I       T            D G+G++   +
Sbjct: 812 VDSLRLQQVFINILSNAIKFTEYNGNIDINIYELPQTKQGYADYKFEFIDDGIGISKEFI 871

Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           +   +PF +       + +GTGLG+ + K ++D   GK  + S   KGT   +
Sbjct: 872 DNIFEPFERENKEMSGKIQGTGLGMTITKRILDMMGGKILVRSELGKGTCFTV 924



 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/175 (14%), Positives = 60/175 (34%), Gaps = 25/175 (14%)

Query: 447 MEIEVMQLC----SILEATSDGIA---IINREGIILSTNRAVSKLFGYPVE-DILRKPFT 498
           +E  + Q+     +I ++ SDG+    + + E   L  N     + GY            
Sbjct: 140 LEKSIDQIEYHIKNIADSISDGLCFYEVKSGELFPLYVNDGYLNIIGYDRNNYDTNSSIK 199

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----- 553
             +  +  + ++  + E L       +E        + K   +     ++          
Sbjct: 200 DKVHPDDLNALSLAIKECLMSGK--LMEFKLRVIDIKGKYHWINAKAHRIDDYPGTNNPV 257

Query: 554 YSLTMHDISEWKQEKNKLSHA---KKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
               + D++E ++ +  L  +   K+   +E   K+  +     E+   L++I G
Sbjct: 258 IFALVTDVTEQRRAEKALIKSEEAKRKTFEELRKKNQQI-----EL--ILSSING 305


>gi|219870720|ref|YP_002475095.1| aerobic respiration control sensor protein ArcB [Haemophilus
           parasuis SH0165]
 gi|219690924|gb|ACL32147.1| aerobic respiration control sensor protein ArcB [Haemophilus
           parasuis SH0165]
          Length = 744

 Score =  318 bits (814), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 95/399 (23%), Positives = 177/399 (44%), Gaps = 14/399 (3%)

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
           + ++       N +            ++E +   L S  +A+ D +   N+ G  L  NR
Sbjct: 81  ERSRIRLEQSLNDLSLLREQDARLNVELEQQAEFLRSFFDASPDLVFYRNQHGEFLGCNR 140

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
           A+  L G   +++L         + T  ++     + L  +   T E+    S  +    
Sbjct: 141 AMEVLTGRSEKELLHLTPKDIYPKETAKLILDTDRDTLISNTGVTYEQWIRHSNNKLSCF 200

Query: 540 SLRIIIK--KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
            +R +    ++    C      DI+E K+        +++ EK S  KS  +A +SHE+R
Sbjct: 201 EIRKVPYYDRVNECHCIMGFGRDITERKR-------YQEMIEKNSRDKSTLMATISHELR 253

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TPL  IIG S ++           +  EY   I+ S   +  I +D++D+ KI+S ++ L
Sbjct: 254 TPLNGIIGLSRILLEGELSA----QQREYLKTINISAVSLGHIFSDIIDLEKIDSRRIEL 309

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAI 716
               V   + +S       L A +K+I     + +N+P  +  D   + QI  N+++NA+
Sbjct: 310 FRSEVEFSQLISNISHFANLMAEQKKIKFTIQYDDNLPDFVCVDNARLSQILWNLVNNAV 369

Query: 717 HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
            FTPSGG+I +      ++     ++D+G+G+   E  K    F Q  NSQ  + +G+G+
Sbjct: 370 KFTPSGGEISLKVERRDHDHYAFILKDSGIGIKKSEQRKIFAMFYQSENSQGKKAQGSGI 429

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
           GL ++K +     G   + S   +G++  +I    + +H
Sbjct: 430 GLAISKRIARLMGGDLTVESELNQGSVFTLIIQADEANH 468


>gi|153807442|ref|ZP_01960110.1| hypothetical protein BACCAC_01722 [Bacteroides caccae ATCC 43185]
 gi|149129804|gb|EDM21016.1| hypothetical protein BACCAC_01722 [Bacteroides caccae ATCC 43185]
          Length = 930

 Score =  318 bits (814), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 103/521 (19%), Positives = 205/521 (39%), Gaps = 33/521 (6%)

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIE 361
           L        +   D  E L        P    +Y   G L   N   L +        + 
Sbjct: 423 LDTTQAVKANQAMDRSEKLFQNIFANIPAGVEIYDKDGYLVDMNNMNLEIFGVVDKSAVM 482

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                       ++ D    + ++ +R + +   A     T +    + + +     +  
Sbjct: 483 GINFFENPNVPQQIRDRVRNEDLVDFRLNYSFQRAEGYYETSR---SSMIELYTKVSKLY 539

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA---IINREGI-ILST 477
           +          I  ++ +      ++         I +    G A   +I R+G  I   
Sbjct: 540 DNEGNFNGYILINIDNTERIDAMNRIRDFENFFLMISDYAKVGYAKLNLITRKGYAIKQW 599

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE-E 536
            + + +    P+ +++       +  +    +  +  E+   + R   +++ +      +
Sbjct: 600 YKNMGEEEDTPLNEVVG--IYRHVHPDDRQYILDFYEEVKKGNRRHFQKEMRIRRVGTTD 657

Query: 537 KLLSLRIII-----KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
           +   +R  I     +            +DI+E K+ + +L  A+  AE     KS FLA 
Sbjct: 658 QWNWVRSNIMVTNYRPDENEIEIIGINYDITELKETEAELILARDKAEMADRLKSAFLAN 717

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           +SHEIRTPL AIIGFS+++              EY   +  +  L+L ++ D+LD+SKIE
Sbjct: 718 MSHEIRTPLNAIIGFSDLLVE----AENLEERKEYVKIVRNNNELLLQLITDILDLSKIE 773

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR--ILADLRSVKQIAL 709
           +G        V ++    + +  +Q+  +E    +   F +++P+  I++D   + Q+ L
Sbjct: 774 AGTFEFSCGDVDVNLLCEDIVCCMQMKVHE---EVELLFDSHLPQCHIISDRNRLHQVIL 830

Query: 710 NILSNAIHFTPSGGQIIISTTHT-SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
           N ++NAI FT  G    I   +    EE+ + V+DTGVG+   +     + F ++ +   
Sbjct: 831 NFVNNAIKFTSQGS---IRVGYQVKGEELEVYVQDTGVGIDEEQQLHIFERFVKLNSF-- 885

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
               GTGLGL + +++++   G+  + S   KG+      P
Sbjct: 886 --VPGTGLGLSICQSIIEQLGGRIGVDSELGKGSRFWFRLP 924



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/157 (13%), Positives = 51/157 (32%), Gaps = 6/157 (3%)

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
           PE      +  +        + M+       +I      G+ I +++G ++  N    ++
Sbjct: 413 PEKDEVVALFLDTTQAVKANQAMDRSEKLFQNIFANIPAGVEIYDKDGYLVDMNNMNLEI 472

Query: 485 FG-YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK-ITLGSTKEEKLLSLR 542
           FG      ++   F                 +++   L  + ++      T    ++ L 
Sbjct: 473 FGVVDKSAVMGINFFENPNVPQQIRDRVRNEDLVDFRLNYSFQRAEGYYETSRSSMIELY 532

Query: 543 IIIKKLPFS----SCYSLTMHDISEWKQEKNKLSHAK 575
             + KL  +    + Y L   D +E     N++   +
Sbjct: 533 TKVSKLYDNEGNFNGYILINIDNTERIDAMNRIRDFE 569


>gi|294505916|ref|YP_003569974.1| sensory transduction histidine kinase [Salinibacter ruber M8]
 gi|294342244|emb|CBH23022.1| sensory transduction histidine kinase [Salinibacter ruber M8]
          Length = 1106

 Score =  318 bits (814), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 131/774 (16%), Positives = 269/774 (34%), Gaps = 70/774 (9%)

Query: 86   TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
             +       L   +E L   + + +   +      V      D    +     R +   G
Sbjct: 344  IYRSTPDDGLVYANEALADMLRHRSVDALLEADP-VHFYADPDQRAQVIQQSNRNDGITG 402

Query: 146  KTT-LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
                    +GT       L+A  +   +     + G   V             +R  +++
Sbjct: 403  VEVEFRRTDGTTFTGL--LSATTVRGPDGAVQYYDG--AVTEITEQKRQEQQLRRSRERW 458

Query: 205  SHLHEIKKG---------HSSVEKEKYDIFSQQSPPP--HLRMKNKVSSLTEYYAHKDDV 253
              L E  +             +      I   ++P       ++  V S        +D 
Sbjct: 459  RRLVEKLEDGLHISVDGEIRYINPAGAAIVGAETPEDIVGRSLQEFVVSERTQQDVVEDR 518

Query: 254  LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ--NNSKESFEYLSHRNHPSL 311
            L+T      ++     P + +   ++  +   + Y   ++          +        +
Sbjct: 519  LRTVYQERASTP----PRELEIIGLDGARRVIESYTVPIEFDGEQAGQTVFRDITEQKEM 574

Query: 312  SAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
                 E E       +      +  +    L YAN +F  +  Y+SV+ I     +  L 
Sbjct: 575  EQALREREARLRSITENVSDGIYRSTPNEGLVYANRAFADIFGYESVEAILQIDPIE-LY 633

Query: 371  DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
              P              R  +      A     +    ++           ++  E +  
Sbjct: 634  ANPDARSE-------NRRITKEQDHIDAAEAEFRRKDGSTFTGLVSATTVRDENGEVLYY 686

Query: 431  NGIEPEDVDTRINKRKMEIEVMQLCSILEAT--------SDGIA---------IIN---- 469
            +G   +  + +   R +     +L S+  AT         D +A         + +    
Sbjct: 687  DGAITDITEQKEQARTLRDRQQKLESLYTATRHLLRAETPDAVATRIQDVLQDVFDYPLA 746

Query: 470  -----REGIILSTNRAVS---KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
                  +G ++    A++   ++                  ++  +V+   +  + +   
Sbjct: 747  GVDFAEDGRLVPVEGAIASPGQMPTIQSLSAGGDSIGARAYRSGETVVVQNVEALDNDVA 806

Query: 522  RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS------EWKQEKNKLSHAK 575
               L  +         ++ +         +    L    ++      +    + KL  AK
Sbjct: 807  YGGLRSVACAPMGTHGVVLMGQTSHDAFDAFNLRLVEVLVTYAAVVLDRLGREQKLREAK 866

Query: 576  KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
            + AE+ +  KS FLA +SHEIRTPLT+IIGF+E I ++  G  G+P    +A  I++ G 
Sbjct: 867  ETAEQVNEMKSAFLANMSHEIRTPLTSIIGFAEAIGDEVSG--GDPTVSRFAGLIEKGGR 924

Query: 636  LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695
             +L+ ++ +L++SK+E+ +M L   P+++ E  ++  +L +  A +  I +R    +   
Sbjct: 925  RLLETLDAVLNLSKLEAEEMELALAPLNVAEQAADTGALFEQQAEKAGIDLRVDVPSGPL 984

Query: 696  RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755
               AD  +++ +  N++SNA+ +T  GG++ I      + + +L V DTG GM    +  
Sbjct: 985  WARADEGALRIVLRNLVSNAVKYTGDGGRVWIRARRAED-QAVLEVEDTGQGMDPAAVST 1043

Query: 756  AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
              + F Q    +    EGTGLGL + K  VD   G   + +    G+   +  P
Sbjct: 1044 LFEAFKQASEGKGREYEGTGLGLAVTKQAVDQMEGTIDVDTEKGVGSRFVVRLP 1097



 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 57/534 (10%), Positives = 151/534 (28%), Gaps = 37/534 (6%)

Query: 81  RTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKR 139
            T +FT  +   G L E ++   +  G    +++G    D        +    +   +++
Sbjct: 200 HTYQFTGLLTPDGILVEANDTALEFGGLEREEVVGTPFWDTHWWQTGPETQQKLRAAVEQ 259

Query: 140 QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199
                       ++G +    ID +  P+   +   +     G               ++
Sbjct: 260 AAEGEFVQYEADVQGADETRTIDFSIRPVTDGDGSVTMLIPEG--RDITDRKRQERQLRK 317

Query: 200 LDKKFSHLHEIKKG-------------HSSVEKEKYDIFSQQSPPPHL-RMKNKVSSLTE 245
             +K     + +               + S   +     ++        R  + +     
Sbjct: 318 EKQKTEEALQARDALLGSITENISEGIYRSTPDDGLVYANEALADMLRHRSVDALLEADP 377

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES----FE 301
            + + D   + +        +     + +F   +   +T      T++            
Sbjct: 378 VHFYADPDQRAQVIQQSNRNDGITGVEVEFRRTDGTTFTGLLSATTVRGPDGAVQYYDGA 437

Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIE 361
                                   V+K      +   G + Y NP+   +   ++ +DI 
Sbjct: 438 VTEITEQKRQEQQLRRSRERWRRLVEKLEDGLHISVDGEIRYINPAGAAIVGAETPEDIV 497

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
               L   + + +   +     +     +R        L  I  +    +  ++    + 
Sbjct: 498 GR-SLQEFVVSERTQQDVVEDRLRTVYQERASTPPR-ELEIIGLDGARRVIESYTVPIEF 555

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
           +             +  + +  ++ +     +L SI E  SDGI        ++  NRA 
Sbjct: 556 DGEQAGQTVF---RDITEQKEMEQALREREARLRSITENVSDGIYRSTPNEGLVYANRAF 612

Query: 482 SKLFGYPVEDILRK--PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
           + +FGY   + + +  P  ++   +  S         ++ +             K+    
Sbjct: 613 ADIFGYESVEAILQIDPIELYANPDARSE-----NRRITKEQDHIDAAEAEFRRKDGSTF 667

Query: 540 SLRIIIKKLPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
           +  +    +   +         + DI+E K++   L   ++  E   +     L
Sbjct: 668 TGLVSATTVRDENGEVLYYDGAITDITEQKEQARTLRDRQQKLESLYTATRHLL 721



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/349 (8%), Positives = 83/349 (23%), Gaps = 17/349 (4%)

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
              D+           SE +      +                       +    L    
Sbjct: 1   MESDEPFSAPFSRSSFSEPAGWGPDTNAPAAVYADPGADVDPERSFGRVLDLATRLFEAP 60

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
               + + +    +     D             +           +      +  A    
Sbjct: 61  MGIGTLHANGQPRVVAA--DGLRDAGLQDEGDGIKA--RLCTRTLRSPGATVVTNATDDD 116

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
            L D P ++ +  I+                 L  +    ++                  
Sbjct: 117 RLADHPWVAGDPGIRFYAGTPLVGPQGHRIGSLCVLDTEAQS---------PPPADVDRL 167

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
                +   +++        +    Q  +I   T     ++  +GI++  N    +  G 
Sbjct: 168 EGLAEMIVNELELHRQADAWDRARQQYEAIFNHTYQFTGLLTPDGILVEANDTALEFGGL 227

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
             E+++  PF       T       L   +         +        ++  ++   I+ 
Sbjct: 228 EREEVVGTPFWDTHWWQTGPETQQKLRAAVEQAAEGEFVQYEADVQGADETRTIDFSIRP 287

Query: 548 LPFSSCYSLTM----HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
           +         +     DI++ K+++ +L   K+  E+    +   L  +
Sbjct: 288 VTDGDGSVTMLIPEGRDITDRKRQERQLRKEKQKTEEALQARDALLGSI 336



 Score = 46.2 bits (108), Expect = 0.022,   Method: Composition-based stats.
 Identities = 24/323 (7%), Positives = 73/323 (22%), Gaps = 34/323 (10%)

Query: 32  NGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDA 91
           +G +  ++   +       +    ++     S T  +                  +    
Sbjct: 556 DGEQAGQTVFRDITEQKEMEQALREREARLRSITENVSDG--------------IYRSTP 601

Query: 92  HGYLKEISEELPKTIGN-YAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150
           +  L   +       G      ++ +   ++         N      ++ +    +    
Sbjct: 602 NEGLVYANRAFADIFGYESVEAILQIDPIELYANPDARSENRRITK-EQDHIDAAEAEFR 660

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
             +G+     +  +A  +   N E   + G   +       +     +   +K   L+  
Sbjct: 661 RKDGSTFTGLV--SATTVRDENGEVLYYDG--AITDITEQKEQARTLRDRQQKLESLYTA 716

Query: 211 KKGHSSVEKEKYDIFSQQS----------PPPHLRMKNKVSSLTEYYAHKDD--VLKTEK 258
            +     E         Q                    ++  +    A       +++  
Sbjct: 717 TRHLLRAETPDAVATRIQDVLQDVFDYPLAGVDFAEDGRLVPVEGAIASPGQMPTIQSLS 776

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR-NHPSLSAYFDE 317
               +    +    E     N+        +G L++ +              +    FD 
Sbjct: 777 AGGDSIGARAYRSGETVVVQNVEALDNDVAYGGLRSVACAPMGTHGVVLMGQTSHDAFDA 836

Query: 318 GENLTPETVDKCPIPFFVYSHGN 340
                 E +        +   G 
Sbjct: 837 FNLRLVEVLVTY-AAVVLDRLGR 858


>gi|311696699|gb|ADP99572.1| multi-sensor hybrid histidine kinase [marine bacterium HP15]
          Length = 1166

 Score =  318 bits (814), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 96/385 (24%), Positives = 181/385 (47%), Gaps = 19/385 (4%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRKPFTVF-LE 502
           ++    + +  S+ +   +G+  ++ +   ++ N A+++L GY    ++L++   V    
Sbjct: 408 QRALSNLQRYQSLFDNAIEGVFQMSPDRRFVTANPAMARLLGYNSSRELLKRNPDVLETC 467

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS--LTMHD 560
                +    + ++ +    + +E   L    +E+  ++ +               T  D
Sbjct: 468 IADERLRRLVIEQLEARGTVKGIEARYLTRDGDERWATISLHTVYDTEGEPTHLEGTCID 527

Query: 561 ISE------WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
            +E       ++E+ +    K++A   +  KS FLA +SHEIRTPL AIIG+ E + +  
Sbjct: 528 ATESHNRLRIEREREQERLEKELARNSAEAKSQFLANMSHEIRTPLAAIIGYGETLLD-- 585

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
              L  P     A  + RSG  +LD+VND+LD SKI++ K+++    V+L E + E  + 
Sbjct: 586 -PDLSEPEKRSSAETVVRSGRHLLDLVNDILDHSKIDANKLDVDIVSVNLPELLDEIRAF 644

Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
               A EK +         +P  +  D   ++QI +N+  NA+ FT  G  I +      
Sbjct: 645 FAPRAREKGLDFSIICEYPLPEQVRTDPTRLRQIIINLCGNALKFTDKGS-ISLVVRCDR 703

Query: 734 NEEVIL-RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
           ++E+++ RV DTG+GM   +L +   PF Q   +   +  GTGLGL +++ + +   G  
Sbjct: 704 DQELLVARVVDTGIGMKPEQLGRLFDPFAQGSAAISRQYGGTGLGLSISRRLAEMLGGSI 763

Query: 793 YIFSTPAKGTLIEIIF---PLYDTS 814
            + ST  +G+  E+     PL +  
Sbjct: 764 RVNSTYGEGSEFELSIRTGPLDEVH 788



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/183 (9%), Positives = 57/183 (31%), Gaps = 6/183 (3%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNTW 143
            + +         +  + + +G  + + +  R  DV +    D      + + L+ + T 
Sbjct: 428 VFQMSPDRRFVTANPAMARLLGYNSSRELLKRNPDVLETCIADERLRRLVIEQLEARGTV 487

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
            G    +     +      ++   +Y    E +   G  I       ++     +R  ++
Sbjct: 488 KGIEARYLTRDGDER-WATISLHTVYDTEGEPTHLEGTCI--DATESHNRL-RIEREREQ 543

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
                E+ +  +  + +     S +   P   +     +L +    + +   + +  + +
Sbjct: 544 ERLEKELARNSAEAKSQFLANMSHEIRTPLAAIIGYGETLLDPDLSEPEKRSSAETVVRS 603

Query: 264 SEE 266
              
Sbjct: 604 GRH 606


>gi|191639754|ref|YP_001988920.1| Sensor protein [Lactobacillus casei BL23]
 gi|190714056|emb|CAQ68062.1| Sensor protein [Lactobacillus casei BL23]
          Length = 636

 Score =  318 bits (814), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 84/383 (21%), Positives = 163/383 (42%), Gaps = 48/383 (12%)

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
             +L S+L   +DG+   +R G ++  N+          ED++       L       + 
Sbjct: 264 RRRLDSVLAHMTDGVIATDRRGNVIIINQTALNFLNTKNEDVIGVSILKLLNIAKDYTLR 323

Query: 511 HYLTEILSL--DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568
             L     L  D  + L+   +        +   +I ++  F S     +HD++E ++  
Sbjct: 324 DLLEHQTELLLDFSEQLDHELILR------VDFSLIQRETGFISGLVAVLHDVTEQQKI- 376

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI-EYA 627
                           + +F++ VSHE+RTPLT++  + E + +   G   +P+    + 
Sbjct: 377 -------------DRDRKEFVSNVSHELRTPLTSVRSYIEALSD---GAWKDPKLAPRFL 420

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV------------ 675
           N      + ++ ++NDLL +S+++SG    + E V+L+E  +  +               
Sbjct: 421 NVTQEETDRMIRMINDLLSLSRLDSGTSKFNLETVNLNEFFNYVLDRFDMMLKTDNEHTG 480

Query: 676 ---------QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726
                    Q    +KR  I+    +    +  D     Q+  NI++NAI ++P GG I 
Sbjct: 481 EAKTAQPLPQPDGQKKRYSIKREITDQDLWVEIDTDKFMQVIDNIMNNAIKYSPDGGTIT 540

Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
                 +++ VIL + D G+G+   +L K    F ++   +  +  GTGLGL ++K +V+
Sbjct: 541 ARL-FQTHDHVILSISDQGLGIPRQDLGKIFDRFYRVDKVRSRKQGGTGLGLAISKEVVE 599

Query: 787 ANMGKFYIFSTPAKGTLIEIIFP 809
           A  G+ ++ S   +G+   I  P
Sbjct: 600 ALHGRIWVDSQEGRGSTFYISLP 622


>gi|86137029|ref|ZP_01055607.1| sensor histidine kinase/response regulator [Roseobacter sp. MED193]
 gi|85826353|gb|EAQ46550.1| sensor histidine kinase/response regulator [Roseobacter sp. MED193]
          Length = 782

 Score =  318 bits (814), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 104/460 (22%), Positives = 192/460 (41%), Gaps = 24/460 (5%)

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
               L+D  A +      ++R      A L           A+         Q      +
Sbjct: 4   AGMSLADKLAEERRARLAAERLLELKQAELSAANRKLGR-HALALTKQIGETQAEVATVR 62

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490
           +       D      K+E    +L   ++A  DG A  + +  ++  N A   LF    E
Sbjct: 63  DENAKVKSDLSQANEKIETAERRLWHSIQAFQDGFAFFDADSRLIGANTAYLNLFDGLEE 122

Query: 491 DILRKPFTVFLEQNTPSVM-------NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
                 +   L+  T   +             ++S        +  +    +++ L L  
Sbjct: 123 AAPGISYMRILQILTDEGLVNTGEMKPDSWRAMMSERWLSMSPEPVVIQMWDDRYLRL-- 180

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
            I +            DI+     + +L  A++ AE  +  KS FLA +SHEIRTP+  +
Sbjct: 181 -IDQRGHGGDVVSLALDITTSVNYEEELRSARERAEAANRAKSAFLANMSHEIRTPMNGV 239

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +G +E++ +       +     YAN I  SG  +L I+ND+LD SKIE+ K+ LH E   
Sbjct: 240 VGMAELLNDTTL----SDEQKLYANTIKNSGEALLVIINDVLDYSKIEADKLVLHEEVFD 295

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSG 722
           L+  + E + L+Q  A +K + I   +   +P + + D   ++Q+  N+  NA+ FT  G
Sbjct: 296 LERCIHEIVMLLQPTARDKGLTILVDYDLFLPTQFVGDPGRIRQVLTNLAGNAVKFTNEG 355

Query: 723 GQIIIST---THTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
             + +     ++       +   + DTG+G+   +++     F Q+ + +  + EGTGLG
Sbjct: 356 -HVTLRVTGISNPEEGTCAVHCMIEDTGIGIPVEKIDHVFGEFNQVEDERNRKFEGTGLG 414

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTL--IEIIFPLYDTSH 815
           L +++ +++   G+ ++ S   KG+     I  P+ + SH
Sbjct: 415 LAISRRLIELMKGEIWVESDEGKGSCFGFRIPLPIVEGSH 454


>gi|172037147|ref|YP_001803648.1| two-component sensor histidine kinase [Cyanothece sp. ATCC 51142]
 gi|171698601|gb|ACB51582.1| two-component sensor histidine kinase [Cyanothece sp. ATCC 51142]
          Length = 1499

 Score =  318 bits (814), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 99/655 (15%), Positives = 221/655 (33%), Gaps = 46/655 (7%)

Query: 184  VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL 243
            +      N       R         + +              + +       + +  ++L
Sbjct: 714  IQELTQLNTDIDNLLRSTDIGVIFLDRQFNIRKFTPAAIRAVNIKPSDVGRPLTDLTNNL 773

Query: 244  TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303
                      L      +  +EE    E     +          Y    +++      ++
Sbjct: 774  HCPN------LINIVQQVARTEEPYEQEVAIAPSDEYVLMRVHPYLQDDKDSDGIVMTFV 827

Query: 304  SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEI 362
                   +  +  +   L     +  P    ++  G      NP+   +        +  
Sbjct: 828  QVNELKQVQQHLKQTNLLLENLYEASPAGLCLFDQGLKFIRVNPALARINGISIEGHLGK 887

Query: 363  AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
                 TL D            +         I  +  +                 +   +
Sbjct: 888  -----TLYDIAPQLAEYLEGILRQVIDTGEAIC-NIEVRGKMPATSEIERCWIASYYPVD 941

Query: 423  QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS------ 476
               +      +  E       +  +     +L         G   +  E  +        
Sbjct: 942  FLNDGRGVGAVVVEITQRVQAEEALRHSQARLQEAQRLAKVGNWELKHEDNLTLETAQPD 1001

Query: 477  TNRAVSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
             ++ +S ++ +  +      +             + +    ++   +  +L+     S +
Sbjct: 1002 CSKELSDIYQFDPQQSCFSLEDILHCHPPADRKALENAFQLLIFDGIPFSLDVELNVSEQ 1061

Query: 535  EEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEKE----------S 582
            E   L++   + +        +  T+ DI+E K+ + +L    K  E+           +
Sbjct: 1062 EVHCLNVIGQVIRDKDGQILKFYGTVMDITERKRIEQELVRRNKALEEAIAVAQVADSAN 1121

Query: 583  SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
              KS+FLA +SHEIRTP+ +I+  S++++          +  +    ++ + N +L+++N
Sbjct: 1122 QAKSEFLANMSHEIRTPINSIMLVSQLLEGTNLDT----QQKKLLQTLNNNSNHLLNLIN 1177

Query: 643  DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADL 701
             +L +SK+ES  + L   P  L++   E        A  K I +  + A+ +P + + D 
Sbjct: 1178 KILSLSKLESRTLELEHRPFHLNQMFQELSHTFTPQAQSKAIGLTFTIASEVPDVLMGDD 1237

Query: 702  RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-------EVILRVRDTGVGMTNYELE 754
              ++Q+  N++SNAI FT SG Q+ ++ T  ++         +   V+DTG+G+   + +
Sbjct: 1238 FRLQQVFSNLISNAIKFTFSG-QVTVTATLPNDTVSQSSPVTLYFTVQDTGIGIDPTKQD 1296

Query: 755  KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
               +PF Q   S   +  GTGLGL + + +V +  G+  + S   KG+   +  P
Sbjct: 1297 SLFQPFVQADTSTTRQFGGTGLGLTICRRIVQSMKGEIGLDSRVGKGSTFWVKIP 1351



 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/264 (8%), Positives = 63/264 (23%), Gaps = 19/264 (7%)

Query: 90   DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
            D       ++  L +  G      +G  L D++  L       +  ++            
Sbjct: 861  DQGLKFIRVNPALARINGISIEGHLGKTLYDIAPQLAEYLEGILRQVIDTGEAICNIEVR 920

Query: 150  --WPIEGTNLYVPIDLAALPI-YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
               P         I  +  P+ +  +    G     +V + +      AL     +    
Sbjct: 921  GKMPATSEIERCWI-ASYYPVDFLNDGRGVGAV---VVEITQRVQAEEALRHSQARLQEA 976

Query: 207  LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKN-----------KVSSLTEYYAHKDDVLK 255
                K G+  ++ E         P     + +            +  +   +   D    
Sbjct: 977  QRLAKVGNWELKHEDNLTLETAQPDCSKELSDIYQFDPQQSCFSLEDILHCHPPADRKAL 1036

Query: 256  TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
               + LL  +        + +      +        +++   +  ++       +     
Sbjct: 1037 ENAFQLLIFDGIPFSLDVELNVSEQEVHCLNVIGQVIRDKDGQILKFYGTVMDITERKRI 1096

Query: 316  DEGE-NLTPETVDKCPIPFFVYSH 338
            ++          +   +     S 
Sbjct: 1097 EQELVRRNKALEEAIAVAQVADSA 1120



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/209 (9%), Positives = 63/209 (30%), Gaps = 6/209 (2%)

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
           +   + +   R +             +    N   +      ++           +   +
Sbjct: 648 SELEQELQQTRENLQVTIEELETANKEQQATNEELLASNEELQSTNEELQSVNEELYTVN 707

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
            + +   +++      + ++L +T  G+  ++R+  I     A  +       D+  +P 
Sbjct: 708 AEHQSKIQELTQLNTDIDNLLRSTDIGVIFLDRQFNIRKFTPAAIRAVNIKPSDV-GRPL 766

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCYS 555
           T          + + + ++   +     E   +     ++ + +R+         S    
Sbjct: 767 TDLTNNLHCPNLINIVQQVARTEEPYEQE---VAIAPSDEYVLMRVHPYLQDDKDSDGIV 823

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSH 584
           +T   ++E KQ +  L     + E     
Sbjct: 824 MTFVQVNELKQVQQHLKQTNLLLENLYEA 852


>gi|148654385|ref|YP_001274590.1| integral membrane sensor hybrid histidine kinase [Roseiflexus sp.
           RS-1]
 gi|148566495|gb|ABQ88640.1| integral membrane sensor hybrid histidine kinase [Roseiflexus sp.
           RS-1]
          Length = 687

 Score =  318 bits (814), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 90/250 (36%), Positives = 143/250 (57%), Gaps = 3/250 (1%)

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           +E  +L+  +  AE  S  KS+FLA +SHE+RTPL +II F+ +I     GP+  P  I+
Sbjct: 176 RENVRLATERAAAEHASQIKSEFLANMSHELRTPLNSIINFTRIISTGARGPVT-PEQID 234

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           Y N + +SG  +L ++ND+LD+SKIE+G+M L  E   + + +   ++       EK I 
Sbjct: 235 YLNRVRQSGEHLLGLINDILDLSKIEAGRMELFRESFQIGDLIQSVLATASGLVKEKPIE 294

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +R+  A ++P + AD   V+Q+ LN+LSNA  FT +G  I +      N E+++ V DTG
Sbjct: 295 LRSEIAPHLPPVYADRTRVRQVLLNLLSNAAKFTDAG-TITVHAE-GCNGEIVIHVSDTG 352

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+    LEK  + F Q+ N+   R EGTGLGL + + +VD + G+ ++ S    G+   
Sbjct: 353 IGIAPEHLEKIFEAFRQLDNASNRRYEGTGLGLAICRRLVDLHGGRLWVESAVGVGSTFS 412

Query: 806 IIFPLYDTSH 815
              PL   + 
Sbjct: 413 FSLPLTAATQ 422


>gi|306825162|ref|ZP_07458504.1| sensor histidine kinase VicK [Streptococcus sp. oral taxon 071 str.
           73H25AP]
 gi|304432598|gb|EFM35572.1| sensor histidine kinase VicK [Streptococcus sp. oral taxon 071 str.
           73H25AP]
          Length = 449

 Score =  318 bits (814), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 92/376 (24%), Positives = 168/376 (44%), Gaps = 33/376 (8%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           R+ +  +E E  +L SIL   +DG+   NR G I   N    K  G   E++L K     
Sbjct: 83  RLTQENLEQESKRLHSILSYMTDGVLATNRRGQITMINDMAKKQLGVQKEEVLNKSILEL 142

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SL 556
           L+      +   +T+I  L +               + LSLR+    +   S +      
Sbjct: 143 LKIEDEYELRDLITQIPELTIDS--------QDANGEYLSLRVRFALVRRESGFISGLVA 194

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            +HD +E ++E+ +                 F++ VSHE+RTPLT++  + E +     G
Sbjct: 195 VLHDTTEQEKEERERRL--------------FVSNVSHELRTPLTSVKSYLEAL---DEG 237

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV- 675
            L +P   ++        N ++ +V DLL +S+I++    L  E ++    ++  ++   
Sbjct: 238 ALYDPVAPDFIKVSLDETNRMMRMVTDLLHLSRIDNATTKLDIELINFTAFITFILNRFD 297

Query: 676 --QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
             +    EK+  +   +      I  D   + Q+  NIL+NAI ++P GG+I +S   T 
Sbjct: 298 KMRNQDEEKKYELVRDYPITSVWIEIDTDKMTQVIDNILNNAIKYSPDGGKITVSMKTTD 357

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
           ++ + L + D G+G+   +L +    F ++  ++     GTGLGL +AK ++  + G  +
Sbjct: 358 DQMI-LSISDQGLGIPKQDLPRIFDRFYRVDRARSRAQGGTGLGLAIAKEIIKQHNGFIW 416

Query: 794 IFSTPAKGTLIEIIFP 809
             S   KG+   I+ P
Sbjct: 417 AKSEYGKGSTFTIVLP 432


>gi|256848491|ref|ZP_05553933.1| two-component sensor histidine kinase [Lactobacillus coleohominis
           101-4-CHN]
 gi|256714758|gb|EEU29737.1| two-component sensor histidine kinase [Lactobacillus coleohominis
           101-4-CHN]
          Length = 620

 Score =  318 bits (814), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 83/423 (19%), Positives = 172/423 (40%), Gaps = 39/423 (9%)

Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM-EIEVMQLC 455
             R  T++  R       +          E     G            +++ E E  +L 
Sbjct: 212 EMRKQTLRIARG-----DYSGRVAVMGNDELGQLAGAINNLSVRVEESQEVSEAEQRRLN 266

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVED-ILRKPFTVFLEQNTPSVMNHYLT 514
           S+L   SDG+   +R G I   N    +L     +D ++ K     L       M   + 
Sbjct: 267 SVLSHMSDGVLATDRRGNITIINETAQQLLDVNDDDNVIGKSLLDILGIRKDYTMRELVD 326

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLS 572
           +          + +   S     +LS    + +      S +   +HD++  ++E  +  
Sbjct: 327 D-------DVQQILIDNSDTSGMILSAYFSVVQRESGFVSGFVCVLHDVTSQQKEDQE-- 377

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
                       +  F++ VSHE+RTPLT++  + E + +  +         ++   +  
Sbjct: 378 ------------RKQFVSNVSHELRTPLTSVKSYVEALSDGAW--KDAEIAPQFLKVVQD 423

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA------NEKRILI 686
             + ++ ++NDLL +S+++SG + L+ E V+++E  +  +    +         +K+  I
Sbjct: 424 ETDRMIRMINDLLSLSRMDSGTVKLNLEYVNINELFNYILDRFDMILKKETDPQQKKYTI 483

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
           +         +  D  +  Q+  NI++NA+ ++P GG I       +   VI+ + D G+
Sbjct: 484 QRKITQKDLWVEIDTDTFTQVIDNIMNNAVKYSPDGGVITARL-METKNHVIMSIADQGL 542

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+   ++      F ++  ++  +  GTGLGL ++K +V+   G+ ++ S   KG+   I
Sbjct: 543 GIPRKDIGHIFDRFFRVDKARSRKQGGTGLGLAISKEVVNLLGGQIWVDSIEGKGSTFYI 602

Query: 807 IFP 809
             P
Sbjct: 603 SLP 605


>gi|218779714|ref|YP_002431032.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
            alkenivorans AK-01]
 gi|218761098|gb|ACL03564.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
            alkenivorans AK-01]
          Length = 1432

 Score =  318 bits (814), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 104/766 (13%), Positives = 229/766 (29%), Gaps = 70/766 (9%)

Query: 86   TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD--LLKRQNTW 143
             + + A G    +S    + +G  A + +G           +       +  L       
Sbjct: 565  VYALSAEGRFTYVSPNWLEFMGEPAERAVGKSFEPYVHPEDVHLCRAFLEKTLANGGKQG 624

Query: 144  YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
              +  +   +G+  +        P    +   +G+   GI              K  + +
Sbjct: 625  SIEYRVRHHDGS--WRWHMSKGSPYRDESGSVTGY--VGIARDVTEAKQAEEALKASEMR 680

Query: 204  FSHLHE--IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS-----LTEYYAHKDDVLKT 256
            F  +              +    +   +         + +               + ++ 
Sbjct: 681  FKEMLRNVTSVAVQGYTLDGAVSYWNHAAETFYGYTEEEALGQNLIDLIIPPAMRETVQA 740

Query: 257  EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY---LSHRNHPSLSA 313
            E   +  + E+  P + +    + +          ++   +E   +   +    H     
Sbjct: 741  EMRQMAETGEAIPPSELELMRKDGSPIQVYSSHALVRVPGREPELFCIDIDLTEHKLAEK 800

Query: 314  YFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
               E         +      ++       L Y N  F  +      D +        ++ 
Sbjct: 801  KLREEREQLLAIFNSIDEVIYISDPSTHELLYVNNYFQRML---PPDCLGAK--CYKIIQ 855

Query: 372  APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
                        ++L +      +     H    +R  ++A   I +             
Sbjct: 856  NRDSPCPFCTNDIILKQK---PASHHWEFHNKHVDRHYAIADRIISWSDGRDVR-----F 907

Query: 432  GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
             I  +    +     +E     L +I++ + D I + + +      N A   + G   E+
Sbjct: 908  EIAIDITKRK----HLERRNQVLANIIKRSQDFIGVADMDQTAYFVNPAGQAMVGLDGEE 963

Query: 492  ILRKP-FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII----- 545
             + +     +   +    + + +   +  D R   E       K  + + +   +     
Sbjct: 964  AVAQTRIEDYFLPDDLPYLRNTILPAVMRDGRWAGEFRFRHF-KTGEAIPVLYDLFHTED 1022

Query: 546  KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS--DFLARVSHEIRTPLTAI 603
                  +  +    +I+E KQ + +         +    +S       V+H+    L  I
Sbjct: 1023 IATGDMTNLATITRNITERKQAEAERGQLHAQLTQAQKMESVGRLAGGVAHDFNNMLNVI 1082

Query: 604  IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
            IG+SE+  +    P  +P Y E    I  +     ++   LL  ++    K  +    + 
Sbjct: 1083 IGYSELALDGM--PQAHPFY-ESFREILDAAMRSSEVTRQLLAFAR----KQTIAPRVLD 1135

Query: 664  LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
            L+E +   + +++     + I +     +    +  D   + Q+  N+  NA      GG
Sbjct: 1136 LNETLEGMLKMLRRLI-GEDIRMIWKPGSETWFVRMDPSQLDQLLANLCVNARDAIADGG 1194

Query: 724  QIIISTT--------------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
            +I IST                   + V+L V+D G GM    +    +PF       + 
Sbjct: 1195 EITISTDNVNISTKDCSANPDLKPGDYVLLSVKDNGCGMDRETMATIFEPFFTTKKPDR- 1253

Query: 770  RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
               GTGLGL     +V  N G   + S P KG L +I  P + +  
Sbjct: 1254 ---GTGLGLSTIYGIVKQNDGAVLVESEPGKGALFKIYLPRHGSPA 1296



 Score =  101 bits (252), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 57/503 (11%), Positives = 124/503 (24%), Gaps = 68/503 (13%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMR-LCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           D  G     ++      G    +      L D+ D             ++ +     +  
Sbjct: 243 DFKGRFHYGNQATYTLHGYADEEAFLNTELHDLDDPETRAMLPERYRKIREKGEARFEVL 302

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +G+   + + LA    +             +              +  +       
Sbjct: 303 HHRKDGSTFPLEV-LARSIEWDGKPAI-----LSVAADITERKKAEEALRESES------ 350

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
            ++   +++   + DI         L +    S + +++A  D  +            + 
Sbjct: 351 RVRTKLNALLDPEGDIGRLNLAD-VLDVDQIQSLMDDFHALTDIGVGIIDLEGNVLVGTG 409

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
             +                                 HR HP  +    E + L   TV+ 
Sbjct: 410 WQD----------------------------VCTKFHRVHPETAKNCRESDTLLASTVE- 440

Query: 329 CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGG----LSTLLDAPKLSDNNAIKPV 384
            P  F +Y   N          +    +   I         L       +  D  A +  
Sbjct: 441 -PGTFKLYKCKN---------NMWDMATPIVIGGKHVGNLFLGQFFLEDEAPDVAAFRKQ 490

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
                        A L   +W+RE    +        N        +       +     
Sbjct: 491 ARRYGFDEEAYLKAYLSIPRWSRETVEQVMTFYCNLINLISRLSFAHIKLARTSE----- 545

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
             +        S +E  +D +  ++ EG     +    +  G P E  + K F  ++   
Sbjct: 546 -ALRQSEQLFRSFVENANDIVYALSAEGRFTYVSPNWLEFMGEPAERAVGKSFEPYVHPE 604

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHD 560
              +   +L + L+   +Q           +                S     Y     D
Sbjct: 605 DVHLCRAFLEKTLANGGKQG-SIEYRVRHHDGSWRWHMSKGSPYRDESGSVTGYVGIARD 663

Query: 561 ISEWKQEKNKLSHAKKIAEKESS 583
           ++E KQ +  L  ++   ++   
Sbjct: 664 VTEAKQAEEALKASEMRFKEMLR 686



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 43/279 (15%), Positives = 94/279 (33%), Gaps = 42/279 (15%)

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED---VDTRI 442
           L +      A + RL     +R + +    +P E A    E +    +  +    +D   
Sbjct: 159 LTQEYGGWAAFTCRLG--YKDRIHGVLSVSVPAELAGDQEEQVLFRELANDIGAALDKMT 216

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI-LRKPFTVFL 501
            +++ E  +  L  +L+     I I + +G     N+A   L GY  E+  L        
Sbjct: 217 AQQQAEKRIALLGRMLDLAPASITIHDFKGRFHYGNQATYTLHGYADEEAFLNTELHDLD 276

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMH 559
           +  T +++     +I      +      L   K+     L ++ + + +           
Sbjct: 277 DPETRAMLPERYRKIREKGEAR---FEVLHHRKDGSTFPLEVLARSIEWDGKPAILSVAA 333

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           DI+E K+ +  L  ++                     RT L A++           G +G
Sbjct: 334 DITERKKAEEALRESESRV------------------RTKLNALL--------DPEGDIG 367

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
                +  +      + +  +++D   ++ I  G ++L 
Sbjct: 368 RLNLADVLD-----VDQIQSLMDDFHALTDIGVGIIDLE 401



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/299 (10%), Positives = 79/299 (26%), Gaps = 39/299 (13%)

Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD 252
             A  +              G   +E+        +       + ++V+ +        +
Sbjct: 98  ALADSQTHQVTAVKSGRASGGFLQLERHLMQGEYPRC-VRQALLADEVTVVRNARRDCPE 156

Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
              T++Y    +    L  ++  H +       +      +                 ++
Sbjct: 157 CPLTQEYGGWAAFTCRLGYKDRIHGVLSVSVPAELAGDQEEQVLFRELANDIGAALDKMT 216

Query: 313 AYFDEGEN--LTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIE--IAGGLS 367
           A     +   L    +D  P    ++   G   Y N +   L  Y   +         L 
Sbjct: 217 AQQQAEKRIALLGRMLDLAPASITIHDFKGRFHYGNQATYTLHGYADEEAFLNTELHDLD 276

Query: 368 TLLDAPKLSDN--------NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
                  L +          A   V+ +R D +         +I+W+ + ++        
Sbjct: 277 DPETRAMLPERYRKIREKGEARFEVLHHRKDGSTFPLEVLARSIEWDGKPAI-------- 328

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
                        +  +  + +  +  +     ++ + L A      +++ EG I   N
Sbjct: 329 -----------LSVAADITERKKAEEALRESESRVRTKLNA------LLDPEGDIGRLN 370


>gi|85714154|ref|ZP_01045143.1| Histidine kinase [Nitrobacter sp. Nb-311A]
 gi|85699280|gb|EAQ37148.1| Histidine kinase [Nitrobacter sp. Nb-311A]
          Length = 831

 Score =  318 bits (814), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 122/677 (18%), Positives = 231/677 (34%), Gaps = 43/677 (6%)

Query: 155 TNLYVPIDLAALPIYSRN----REFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
           T+    ++     I  +     R+  G R                      +        
Sbjct: 177 TSAGRTVEAMGRAIGGQAIVRIRDLGGLR-----RDLAEMTLRHNNLLAETEMLRTFAGA 231

Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270
                    E  ++    +           +   +      D            + ++  
Sbjct: 232 APWPLWARSEDGNLSYANAAYARATEAAGAADAIQRNLELLDSEDRIAMARALDDHAAFS 291

Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330
            +     I   +     +   L+     +   L      +L    +   +    T+D+  
Sbjct: 292 ARLPI-VIGGERRMYDVH--ALRAAGGSAGIALDASEAVTLRQTLERMADAHRRTLDQLS 348

Query: 331 IPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389
               V+     L + N S+  L              L          D++ +  +   R 
Sbjct: 349 SGVAVFDGRRRLAFYNDSYRRLWD------------LDRAFLDGNPDDSSVLDRLRAARK 396

Query: 390 DRTCIAASA---RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
                   A   RLH      E    + ++P  +A          G      D       
Sbjct: 397 LPEQPDFRAWKARLHEAYRANEAVKDVWYLPDGRALSIVTTPNPEGGVTYLFDDVTESLD 456

Query: 447 MEIEVMQL----CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
           +     +L       L++ ++ +A+    G     N A ++++    E + ++P    +E
Sbjct: 457 LARRYDRLITVQRETLDSLTEAVAVFGSNGRAQLFNPAFARMWKLSAEALAQQPHIDTVE 516

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKI----TLGSTKEEKLLSLRIIIKKLPFSSCYSLTM 558
                + +              ++           K+  +L    +           LT 
Sbjct: 517 AWCKPLFDDNDAWRTIHKAVTGIDNRTAVPLKLERKDGSVLDCMTMPLP---DGATMLTF 573

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
           HDI++ +  +  L       E     K DF+  VS+E+R+PLT IIGF+ ++ +   GPL
Sbjct: 574 HDITDSENVERALRERNDALETADQMKVDFVHHVSYELRSPLTTIIGFAHLMNDPGTGPL 633

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
              +  EY NYI  S + +L + N++LD++ I++G M L   PV + + ++ A   +Q  
Sbjct: 634 T-EKQAEYVNYITSSTDALLALTNNILDLATIDAGAMTLELGPVDVRKTIAAAAEGIQDR 692

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738
                I++      +I   + D R + Q+  N+L+NA +F+P    I +S   T +  V 
Sbjct: 693 LARDHIVLNVDVDPDIGNFIGDERRIVQVLYNLLANAANFSPPNAVITVSARRTEH-SVR 751

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
             V D G G+     +K    F    ++   R  G GLGL L ++ V+ + G+ +  ST 
Sbjct: 752 FAVMDEGPGIPPDVKDKVFDWFE--SHANGSRHRGAGLGLSLVRSFVELHGGRVHFDSTI 809

Query: 799 AKGTLIEIIFPLYDTSH 815
             GT +   FPL  T+H
Sbjct: 810 TSGTRVVCDFPLDQTAH 826



 Score = 57.7 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 43/376 (11%), Positives = 100/376 (26%), Gaps = 21/376 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI--GDLLKRQNTW 143
            W     G L   +    +            R  ++     +D  + I     L     +
Sbjct: 236 LWARSEDGNLSYANAAYARATEAAGAADAIQRNLEL-----LDSEDRIAMARALDDHAAF 290

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                  PI         D+ AL     +   +      +     ++    A  + LD+ 
Sbjct: 291 S---ARLPIVIGGERRMYDVHALRAAGGSAGIALDASEAVTLRQTLERMADAHRRTLDQL 347

Query: 204 FSHLHEIK-KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
            S +     +   +   + Y               +  S L    A +    + +     
Sbjct: 348 SSGVAVFDGRRRLAFYNDSYRRLWDLDRAFLDGNPDDSSVLDRLRAARKLPEQPDFRAWK 407

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQ-YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
                +    E    +      +      T       ++ +        L+  +D    +
Sbjct: 408 ARLHEAYRANEAVKDVWYLPDGRALSIVTTPNPEGGVTYLFDDVTESLDLARRYDRLITV 467

Query: 322 TPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
             ET+D       V+ S+G     NP+F  + K  S + +     + T+    K   ++ 
Sbjct: 468 QRETLDSLTEAVAVFGSNGRAQLFNPAFARMWKL-SAEALAQQPHIDTVEAWCKPLFDDN 526

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
                ++++       +A    ++    + L    +P                  +  D+
Sbjct: 527 DAWRTIHKAVTGIDNRTAVPLKLERKDGSVLDCMTMPLPDGA-------TMLTFHDITDS 579

Query: 441 RINKRKMEIEVMQLCS 456
              +R +      L +
Sbjct: 580 ENVERALRERNDALET 595


>gi|117926800|ref|YP_867417.1| Hpt sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117610556|gb|ABK46011.1| Hpt sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 920

 Score =  318 bits (814), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 98/382 (25%), Positives = 168/382 (43%), Gaps = 28/382 (7%)

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
           E   +   LE    G  I++ +  I+  N  + +        +L         +   S +
Sbjct: 5   ENTLMRQALELNGLGTIILDPQQTIVFWNAWMERGSQMFAAHVLGSKLLDVFPELQGSRL 64

Query: 510 NHYLTEILSLDLRQTLEKITLG------------STKEEKLLSLRIIIKKLPFSSCYSLT 557
           +  +   L   L   L                     +     ++I   +      Y + 
Sbjct: 65  DRAVVSALRTGLPTMLSHRLNPTPFPLETASKNEELGQRMSQMVQIKAIRNEAGERYCVI 124

Query: 558 -MHDISEWKQEKN-------KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
            +HDI+     +        +L  AK  A++ +  KSDFLA +SHEIRTP+ AIIG S +
Sbjct: 125 LIHDITNTVSREQMLRNQARELHSAKDEAQQANRAKSDFLANMSHEIRTPMNAIIGMSHL 184

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
                     N +  +Y   I  S  L+L I+ND+LD SKIE+GK+++      LD+ +S
Sbjct: 185 ALKTDL----NAKQRDYVGKIHDSALLLLGIINDILDFSKIEAGKLSMESVAFYLDDVLS 240

Query: 670 EAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII-I 727
              +LV +   EK + I       +P  ++ D   + QI +N+++NA+ FT  G  ++ I
Sbjct: 241 NVANLVSMKVEEKGLEISFQVDRGVPLHLVGDPLRLGQILINLVNNAVKFTEQGNIVVAI 300

Query: 728 STTHTSNEEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
           +        V+   +VRD+G+GMT  ++++  + F Q  +S   R  G+GLGL + K +V
Sbjct: 301 TAELDCESHVVVQFQVRDSGIGMTKQQIDRLFQAFSQADSSTTRRYGGSGLGLSICKRLV 360

Query: 786 DANMGKFYIFSTPAKGTLIEII 807
               G  ++ S P +G+     
Sbjct: 361 GMMDGDIWVESQPGRGSQFTFT 382


>gi|187926379|ref|YP_001892724.1| multi-sensor hybrid histidine kinase [Ralstonia pickettii 12J]
 gi|187728133|gb|ACD29297.1| multi-sensor hybrid histidine kinase [Ralstonia pickettii 12J]
          Length = 678

 Score =  318 bits (814), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 100/382 (26%), Positives = 172/382 (45%), Gaps = 21/382 (5%)

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILST-NRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
            +   +L + L+A+   +  ++         N     +FG   E +L +       +   
Sbjct: 156 RLSQQRLLAALQASPISLYDVDNTMHFTWVHNP----VFGLQPEQLLGRTVREVFGRRAA 211

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEW 564
           S +      +++      +E        +  +  + ++  +         +  + DISE 
Sbjct: 212 SRLTEAGQRVIATGTPTRVEFAFRRRHTQRVVYDVVVMPLRDDTGEIIGLTNAVIDISER 271

Query: 565 KQEK-------NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
           +Q +          S A++ AE+ S  K DFLA VSHE+RTPL A++G+++++       
Sbjct: 272 RQAEARRTQLLEAESRAREEAERASRLKDDFLATVSHELRTPLNAVLGWAQLL---NMRA 328

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
                +      I+RS    + +++DLLD+S I SGK+ L   PV L + +  A   ++ 
Sbjct: 329 YDEAMFKRGIEAIERSARTQVHLIDDLLDMSAILSGKVPLEIGPVDLADVLERARETIEP 388

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737
            A +K I I T F   +P +  D   +KQ+  N+L+NA+ FTP GG I +S        V
Sbjct: 389 MARQKNITIETEFLP-VPMLQGDAGRLKQVFWNLLANAVKFTPEGGHIRLSVHPAPEGVV 447

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY-IFS 796
              VRDTG+G+    L      F Q   S   R  G GLGL +AK +V+ + G+     S
Sbjct: 448 A-TVRDTGIGIEPTFLPHIFDRFQQADLSSTRRHGGLGLGLAIAKQLVELHHGRITAASS 506

Query: 797 TPAKGTLIEIIFPLYDTSHPHD 818
              +GT + +  PL+  + P +
Sbjct: 507 GADRGTTMAVSLPLH-AAQPGE 527



 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/342 (11%), Positives = 80/342 (23%), Gaps = 26/342 (7%)

Query: 105 TIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLA 164
             G    +++G  + +V            G  +    T       +        V  D+ 
Sbjct: 189 VFGLQPEQLLGRTVREVFGRRAASRLTEAGQRVIATGTPTRVEFAFRRR-HTQRVVYDVV 247

Query: 165 ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDI 224
            +P+     E  G     I           A   +L +  S   E  +  S ++ +    
Sbjct: 248 VMPLRDDTGEIIGLTNAVI--DISERRQAEARRTQLLEAESRAREEAERASRLKDDFLAT 305

Query: 225 FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYT 284
            S +   P        + L    A+ + + K     +  S  + +   +D   ++     
Sbjct: 306 VSHELRTPLN-AVLGWAQLLNMRAYDEAMFKRGIEAIERSARTQVHLIDDLLDMSAILSG 364

Query: 285 KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNL--F 342
           K        + +               +      +       +  P+P      G L   
Sbjct: 365 KVPLEIGPVDLADVL-------ERARETIEPMARQKNITIETEFLPVPMLQGDAGRLKQV 417

Query: 343 YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIA------A 396
           + N          +       GG   L   P      A         + T +        
Sbjct: 418 FWN-------LLANAVKFTPEGGHIRLSVHPAPEGVVATVRDTGIGIEPTFLPHIFDRFQ 470

Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
            A L + + +    L +                 +       
Sbjct: 471 QADLSSTRRHGGLGLGLAIAKQLVELHHGRITAASSGADRGT 512


>gi|332531231|ref|ZP_08407144.1| Proline sensor PrlS [Hylemonella gracilis ATCC 19624]
 gi|332039338|gb|EGI75751.1| Proline sensor PrlS [Hylemonella gracilis ATCC 19624]
          Length = 1317

 Score =  318 bits (814), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 118/750 (15%), Positives = 254/750 (33%), Gaps = 62/750 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG--DLLKRQNTWYGK 146
            D  G +           G+    +  M L ++     +     +     L  +      
Sbjct: 55  TDVAGRIVWADTAYAHLTGHGLDDLTRMTLPELLRNAVLPGPRRLELDAALHARTPLRVD 114

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVH-VNRVDNDPRALGKRLDKKFS 205
                  G   +  ++L   P+    +    F G+ +V     +    +   ++  +   
Sbjct: 115 VQFRRPGGHARWTMVELH--PLRDPEQA--EFIGWMVVQIDIDLARGEQERVRQALRDHE 170

Query: 206 HLHEIKKGHSSVEKEK--YDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEKYPL 261
           +L+ I   H+ V +      I        H+    ++++  L     +           +
Sbjct: 171 NLNSIMDQHAIVSETDLQGRILRFNERFTHISGYAQDELLGLNHNLLNSGHHTPDFWRDM 230

Query: 262 LTSEESSLPEQEDF--HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
            ++       + +      N + Y        L         Y+S R   +     +   
Sbjct: 231 WSTIGQGRVWRGEICNRAKNGSLYWVDSVIAPLMGPDGLPERYVSVRTDITARKNHEVLL 290

Query: 320 NLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
             T        +  +    G+             +       +    + L  +  +    
Sbjct: 291 QRTGRIAG---VGGWHGDLGSGV---------LNFSEEARAILRLDAAQLPVSEVMQGLA 338

Query: 380 AIKPVMLYRSDRTCIAASARLHT----IQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
                 L       +   A++ +    ++    + + +     E      +     G   
Sbjct: 339 PQVAQELRGHVDALVQGRAQVFSQSLKVEQADGSEVWVRLSG-EVELYKGKPQRVIGAVQ 397

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-R 494
           +     + +++++     L S  EA  +  A+ ++   +L  N    ++ G     I   
Sbjct: 398 DISSYVLARQRIQAGERLLRSAFEALGEAFAVYDKHERLLFYNDKYREILGAKRSAITTG 457

Query: 495 KPFT----VFLEQNTPSVMNHYLTEILSLDLR-QTLEKITLGSTKEEKLLSLRIIIKKLP 549
             F     + ++           T +  +    +  +          + +     I    
Sbjct: 458 LTFDTVAQMLIDAGVYRGNTDPRTRLREMRQMMERPDFRYQVQLSTGRWVKY---IGHAT 514

Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
               + L   DI++       +  A + A+  +  KS FLA +SHEIRTP+ A++G  ++
Sbjct: 515 PDGLHVLFRIDITD-------IQEALQAAQAAAEGKSRFLANMSHEIRTPMNAVMGMLQL 567

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           ++        +    +    I  +  ++L I+ND+LD SKIE+GKM L  EP +LD   +
Sbjct: 568 LEQTPL----DAEQEDLLGKIGSAARMLLGILNDILDFSKIEAGKMPLDLEPFALDTLYA 623

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
           E   ++     +K + +       IP +   D+  +KQ+ +N+  NAI FT  G Q+++ 
Sbjct: 624 ELSPILSGALGDKSLELIYDIDPAIPLVLRGDMLRLKQVLMNLGGNAIKFTAQG-QVLLR 682

Query: 729 TTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
                 +E    +   V+DTG+G++  +++     F Q   S   R  GTGLGL +++ +
Sbjct: 683 VRQMRRDEHGVLLEFAVQDTGIGISPDQIQHIFSGFSQAEASTSRRYGGTGLGLAISQRL 742

Query: 785 VDAN-----MGK-FYIFSTPAKGTLIEIIF 808
           V         G+   + S P +G+      
Sbjct: 743 VGLMVEASGEGRALTVESEPGRGSCFSFQL 772



 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/337 (10%), Positives = 78/337 (23%), Gaps = 33/337 (9%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMI---------GMRLCDVSDILHIDPNNHIGDLLK 138
             D  G +   +E      G    +++         G    D            +   + 
Sbjct: 184 ETDLQGRILRFNERFTHISGYAQDELLGLNHNLLNSGHHTPDFW--------RDMWSTIG 235

Query: 139 RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
           +   W G+       G+     +D    P+   +      R   +        +   L +
Sbjct: 236 QGRVWRGEICNRAKNGSLY--WVDSVIAPLMGPDGLPE--RYVSVRTDITARKNHEVLLQ 291

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
           R  +            S V     +  +           ++V  +          L+   
Sbjct: 292 RTGRIAGVGGWHGDLGSGVLNFSEEARAILRLDAAQLPVSEV--MQGLAPQVAQELRGHV 349

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL---QNNSKESFEYLSHRNHPSLSAYF 315
             L+        +       + ++   +             +         ++       
Sbjct: 350 DALVQGRAQVFSQSLKVEQADGSEVWVRLSGEVELYKGKPQRVIGAVQDISSYVLARQRI 409

Query: 316 DEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIA--GGLSTLLDA 372
             GE L     +     F VY     L + N  +  +   K            ++ +L  
Sbjct: 410 QAGERLLRSAFEALGEAFAVYDKHERLLFYNDKYREILGAKRSAITTGLTFDTVAQMLID 469

Query: 373 PKLSDNNAIKPVMLYR----SDRTCIAASARLHTIQW 405
             +   N      L       +R       +L T +W
Sbjct: 470 AGVYRGNTDPRTRLREMRQMMERPDFRYQVQLSTGRW 506



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 47/146 (32%), Gaps = 5/146 (3%)

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
            QL  +  +  D +A  +  G I+  + A + L G+ ++D+ R      L          
Sbjct: 39  AQLLRMARSPQDAVAFTDVAGRIVWADTAYAHLTGHGLDDLTRMTLPELLRNAVLPGPRR 98

Query: 512 Y-LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQE 567
             L   L       ++          +   + +   + P  +    + +   DI +  + 
Sbjct: 99  LELDAALHARTPLRVDVQFRRPGGHARWTMVELHPLRDPEQAEFIGWMVVQIDI-DLARG 157

Query: 568 KNKLSHAKKIAEKESSHKSDFLARVS 593
           + +         +  +   D  A VS
Sbjct: 158 EQERVRQALRDHENLNSIMDQHAIVS 183


>gi|238910122|ref|ZP_04653959.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Tennessee str.
           CDC07-0191]
          Length = 778

 Score =  318 bits (814), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 84/435 (19%), Positives = 177/435 (40%), Gaps = 17/435 (3%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L +          +L  +Q     +     I   +  +         ++ E
Sbjct: 81  EESRQRLSRLVQKLEEMRERDLKL-NVQLKDNIAQLNQEIADREKAEAELQETFEQLKVE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             +    + ++E +   L S L+A+ D +   N +      NRA+  L G   + ++   
Sbjct: 140 IKEREEAQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCY 554
                       +     ++   ++  T E+        +    +R +    ++      
Sbjct: 200 PEDVYSPEAAEKVIETDEKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGL 259

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+        +   E+ S  K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 260 MGFGRDITERKR-------YQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTD 312

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     +Y   I  S   + +I ND++D+ K+E  K+ L  +P+     +++  +L
Sbjct: 313 LTA----EQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPIDFTSFMADLENL 368

Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
             L A +K +         +P  ++ D   ++QI  N++SNA+ FT  G Q+ +   +  
Sbjct: 369 SGLQAQQKGLRFVLEPTLPLPHKVITDGTRLRQILWNLISNAVKFTQQG-QVTVRARYDE 427

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMGKF 792
            + +   V D+G+G+   E +K    + Q+ +S   +   GTG+GL +++ +     G  
Sbjct: 428 GDMLHFEVEDSGIGIPQDEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDI 487

Query: 793 YIFSTPAKGTLIEII 807
            + S P KG+   + 
Sbjct: 488 TVSSLPGKGSTFTLT 502


>gi|317471741|ref|ZP_07931081.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
 gi|316900764|gb|EFV22738.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
          Length = 799

 Score =  318 bits (814), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 87/394 (22%), Positives = 173/394 (43%), Gaps = 21/394 (5%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREG--IILSTNRAVSKLFGYPVEDILR--KPFTV 499
           + K+E    +  +I+     G A ++ E    ++       ++ GY  E      +    
Sbjct: 136 EYKLEKRDREREAIIRTIPGGFARVDAEDLRTVIWYGGGFLQMIGYTEEQFENELQSKCD 195

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYS 555
           ++  +        + +          E   +    + K+L++         S      + 
Sbjct: 196 YVHPDDIERTVEIMEKSRETGEDTAAEGRIVTRDGKIKILTMTFSYVSAKDSWDGKDSFY 255

Query: 556 LTMHDIS----EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
               DI+    E +++K  L  A + A   ++ K++FL+ +SH+IRTP+ AI+G + + +
Sbjct: 256 SIGIDITKEREEQERQKTALQDAYQAARVANAAKTNFLSSMSHDIRTPMNAIMGMAAIAQ 315

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
                P    +  +  N I+ S   +L ++N++LD+SKIESGK+N+  E +SL + +   
Sbjct: 316 ANLECP---DKIQDCLNKINTSSRHLLSLINEVLDMSKIESGKINISLEQISLPDMIGAV 372

Query: 672 ISLVQLYANEKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
           + +     N K    + S  + N   ++AD   ++Q+ +N++SNA+ +TP GG I +   
Sbjct: 373 MDMCLPLINGKHQQFQMSIGHINHEHVIADGDRLRQVLMNLISNAVKYTPEGGTITLRIN 432

Query: 731 HT-----SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
                     +      DTG+G++   L    +PF +  +S+  + +GTGLG+ + + +V
Sbjct: 433 EQYSPNPKKSQYEFICIDTGIGISEEFLPHIFEPFSRAEDSRISKIQGTGLGMAITENIV 492

Query: 786 DANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819
               G   + S    G+   +  PL        C
Sbjct: 493 RMMNGTIGVESKIGTGSKFTVSVPLEICGEEEVC 526


>gi|255691148|ref|ZP_05414823.1| two-component system sensor histidine kinase [Bacteroides
           finegoldii DSM 17565]
 gi|260623241|gb|EEX46112.1| two-component system sensor histidine kinase [Bacteroides
           finegoldii DSM 17565]
          Length = 934

 Score =  318 bits (814), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 98/518 (18%), Positives = 197/518 (38%), Gaps = 27/518 (5%)

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIE 361
                    +   D  E L        P    +Y   G L   N   L +    + +D+ 
Sbjct: 423 TDSTEAVEANRALDRSEKLFKNIFANIPAGVEIYDKDGYLLDLNNKNLEIFGIANKEDVI 482

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                        + D    + ++ +R +    +        +  R N + +     +  
Sbjct: 483 GINFFENPNVPQTIRDRVRNEDLVDFRLN---YSFDQIKGYYRTMRSNVIELYSKVTKLY 539

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA---IINREGI-ILST 477
           ++  E +    I  ++ +      ++         I +    G A   ++NR+G  I   
Sbjct: 540 DREGEFIGYILISIDNTERIDAMNRIRDFENFFLMISDFAKVGYAKLNLLNRKGYAIKQW 599

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK-EE 536
            + + +     + D++       +       +  +  E+     +    ++ +     E 
Sbjct: 600 YKNMGEEEDIALSDVVG--VYRKMHPEDRKGLLDFYKEVKVGKRKHFQGEMRILRPGTEN 657

Query: 537 KLLSLRIIIK-----KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
           +   +   +                  +DI++ K+ + +L HA+  AE     KS FLA 
Sbjct: 658 EWNWVNTNVMVTQYKPEEGEIEIIGINYDITKLKETEAELIHARDKAEMMDRLKSAFLAN 717

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           +SHEIRTPL AI+GFS+++              EY   +  + +L+L +++D+LD+SKIE
Sbjct: 718 MSHEIRTPLNAIVGFSDLLVET----ADIEERREYMKIVRENNDLLLQLISDILDLSKIE 773

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
           +G        V ++    + +  +Q+   E  + +      +I  I +D   + Q+  N 
Sbjct: 774 AGTFEFSHGDVDVNLLCEDLVRSMQMKTKE-NVKLVFEPNFSICHITSDRNRIYQVISNF 832

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           ++NAI FT  G  I +         +   V+DTG+G+   +L    + F ++ +      
Sbjct: 833 VNNAIKFTSEG-NIRVGYVLKDEG-LEFYVQDTGIGIEKKQLPHIFERFVKLDSFVH--- 887

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            GTGLGL + +++V+   G   + S   KG+      P
Sbjct: 888 -GTGLGLSICQSIVEQLGGHIGVDSEKGKGSRFWFTIP 924



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/275 (13%), Positives = 77/275 (28%), Gaps = 35/275 (12%)

Query: 318 GENLTPETVDKCPIP---FFVYSHG-------NLFYANPSFLLLTKYKSVDDIEIAGGLS 367
            ++         P+      V            +  AN              +E   G+ 
Sbjct: 313 EQSFLRNLFHFMPMGYIRMSVLRDENNKPYDYRITDANQISAHFFGKP----LEQYVGV- 367

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
             L +   SD++     +L   D                   +  + + P +        
Sbjct: 368 --LASDLFSDHSEKMDFILEVLDGKSYKEKDEYFPQT--GLYTHWIVYSPEKDE------ 417

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
               G+  +  +     R ++       +I      G+ I +++G +L  N    ++FG 
Sbjct: 418 --VVGLFTDSTEAVEANRALDRSEKLFKNIFANIPAGVEIYDKDGYLLDLNNKNLEIFGI 475

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL---GSTKEEKLLSLRII 544
             ++ +      F   N P  +   +     +D R       +     T    ++ L   
Sbjct: 476 ANKEDVIG-INFFENPNVPQTIRDRVRNEDLVDFRLNYSFDQIKGYYRTMRSNVIELYSK 534

Query: 545 IKKLPFSS----CYSLTMHDISEWKQEKNKLSHAK 575
           + KL         Y L   D +E     N++   +
Sbjct: 535 VTKLYDREGEFIGYILISIDNTERIDAMNRIRDFE 569


>gi|229170813|ref|ZP_04298427.1| hypothetical protein bcere0007_57120 [Bacillus cereus AH621]
 gi|228612651|gb|EEK69860.1| hypothetical protein bcere0007_57120 [Bacillus cereus AH621]
          Length = 801

 Score =  318 bits (814), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 104/532 (19%), Positives = 211/532 (39%), Gaps = 47/532 (8%)

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVD----KCPIPFFV-YSHGNLFYANPSFLLL 351
            +  E +      +     +     T E ++           +    G++  AN ++  +
Sbjct: 294 GQVMEVVGSIVDITERKKVESELRATKELLESFIKHNVDAITISDREGHILQANKAYEKI 353

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN-RENS 410
             +   + I            P + D    + +   +   T  +   RL T++     + 
Sbjct: 354 FGWSLQEIIGKRL--------PCVPDFLMEESLENIQKILTGESVVTRLETVRRRNDGSL 405

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK-------MEIEVMQLCSILEATSD 463
           L ++       +     +  + I  +  + +  +R+       ++   M+  +++E  +D
Sbjct: 406 LDVSLTVSPILDVRGNVIALSAICRDISERKQAERERHRLHQQLKDSEMKYRALIEQATD 465

Query: 464 GIAIINREG-----IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
            + ++           +  N    K FGY  E++L  PF   + Q++  ++   L  I  
Sbjct: 466 AVYVVELNENHVPSRFIEVNPVGCKRFGYSREELLSLPFPNVVPQDSKMIVR-LLKRIRE 524

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578
                TL+   +  T +       + I  L     +     DI+E  + +  L  ++K+A
Sbjct: 525 GQTSFTLQDEYVFPTGKIITTEFSVRIFNLNGKKVFLSISRDITERLKTEELLRKSEKLA 584

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
                        ++HEI  PLTA+ GF +++K+             Y N +      + 
Sbjct: 585 VV-----GQLATAMAHEINNPLTAMKGFMQLLKSTETKNN-----RGYINIVSSEIERIE 634

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
            I N+ + ++K +  K+  +     +   + + + L+Q  A    I IR  F  +IP I 
Sbjct: 635 SITNEFMAVAKPQVVKIQPN----DISVLMDQGLMLLQPQAMMNNIQIRIDFTPDIPLIP 690

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
            +   +KQ+ +NIL NAI   P+GG+I+I      N ++ +R  D G G+    +    +
Sbjct: 691 CEGNQLKQVFVNILKNAIESMPTGGEILIQFDKLDNNQIRIRFIDQGCGIPKERIPYLGE 750

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           PF        I+ EG GLGL +   +++ + GK +I S   KGT++E+  P+
Sbjct: 751 PFY------SIKEEGIGLGLMVCYKIIETHQGKVFIESEVNKGTIVEVTLPI 796



 Score =  111 bits (277), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 41/280 (14%), Positives = 88/280 (31%), Gaps = 20/280 (7%)

Query: 313 AYFDEGENLTPETVDKCPIPFF----VYSHGNLFYANPSFLLLTKYKSVDDIEI-AGGLS 367
               + +    +TV +     F    +  H      +  F     + S   +      + 
Sbjct: 186 RELKKSKQELTDTVHELQGGIFKFKKLGKHFIHTLCDGQFYYQKGFYSEQVVGKSLRTID 245

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
             +  P L          L   +   I        + W  + ++ +         +  + 
Sbjct: 246 ASIVPPHLVPQLMKY--YLQAWEGKEIIFE-----LPWPDDKTIILI--ALRPIKRNGQV 296

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
           M   G   +  + +  + ++      L S ++   D I I +REG IL  N+A  K+FG+
Sbjct: 297 MEVVGSIVDITERKKVESELRATKELLESFIKHNVDAITISDREGHILQANKAYEKIFGW 356

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
            +++I+ K     +           + +IL           T+    +  LL + + +  
Sbjct: 357 SLQEIIGKRL-PCVPDFLMEESLENIQKIL-TGESVVTRLETVRRRNDGSLLDVSLTVSP 414

Query: 548 LPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESS 583
           +               DISE KQ + +     +  +    
Sbjct: 415 ILDVRGNVIALSAICRDISERKQAERERHRLHQQLKDSEM 454



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 33/263 (12%), Positives = 73/263 (27%), Gaps = 24/263 (9%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG-KTT 148
           D  G++ + ++   K  G    ++IG RL  V D L  +   +I  +L  ++     +T 
Sbjct: 338 DREGHILQANKAYEKIFGWSLQEIIGKRLPCVPDFLMEESLENIQKILTGESVVTRLETV 397

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +G+ L V + ++  PI              I               RL ++     
Sbjct: 398 RRRNDGSLLDVSLTVS--PILDVRGNVIALS--AICRDISERKQAERERHRLHQQLKDSE 453

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLR--------------MKNKVSSLT-EYYAHKDDV 253
              +       +   +          R               + ++ SL       +D  
Sbjct: 454 MKYRALIEQATDAVYVVELNENHVPSRFIEVNPVGCKRFGYSREELLSLPFPNVVPQDSK 513

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
           +       +   ++S   Q+++        T +               +LS     +   
Sbjct: 514 MIVRLLKRIREGQTSFTLQDEYVFPTGKIITTEFSVRIFN--LNGKKVFLSISRDITERL 571

Query: 314 YFDEGENLTP--ETVDKCPIPFF 334
             +E    +     V +      
Sbjct: 572 KTEELLRKSEKLAVVGQLATAMA 594



 Score = 41.2 bits (95), Expect = 0.70,   Method: Composition-based stats.
 Identities = 38/244 (15%), Positives = 82/244 (33%), Gaps = 32/244 (13%)

Query: 486 GYPVEDILRKPFTVFLEQNTPSV-MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
           G+  E ++ K          P   +   +   L     + +         +  +L     
Sbjct: 230 GFYSEQVVGKSLRTIDASIVPPHLVPQLMKYYLQAWEGKEIIFELPWPDDKTIILIALRP 289

Query: 545 IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS----HEIRTPL 600
           IK+         ++ DI+E K+ +++L   K++ E    H  D +  +S    H     L
Sbjct: 290 IKRNGQVMEVVGSIVDITERKKVESELRATKELLESFIKHNVDAI-TISDREGH----IL 344

Query: 601 TA------IIGFS-EVIKNQRFGPLGN---PRYIEYANYIDRS---GNLVLDIVND---- 643
            A      I G+S + I  +R   + +      +E    I         +  +       
Sbjct: 345 QANKAYEKIFGWSLQEIIGKRLPCVPDFLMEESLENIQKILTGESVVTRLETVRRRNDGS 404

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703
           LLD+S   S  +++    ++L     +     +  A  +R  +     ++  +  A    
Sbjct: 405 LLDVSLTVSPILDVRGNVIALSAICRDISE--RKQAERERHRLHQQLKDSEMKYRA---L 459

Query: 704 VKQI 707
           ++Q 
Sbjct: 460 IEQA 463


>gi|119470568|ref|ZP_01613271.1| putative Sensory box sensor histidine kinase/response regulator
           [Alteromonadales bacterium TW-7]
 gi|119446269|gb|EAW27546.1| putative Sensory box sensor histidine kinase/response regulator
           [Alteromonadales bacterium TW-7]
          Length = 1263

 Score =  318 bits (814), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 100/533 (18%), Positives = 202/533 (37%), Gaps = 39/533 (7%)

Query: 286 KQYFGTLQNNSKESFEYLSHRNHPSLS--AYFDEGENLTPETVDKCPIPF-FVYSHGNLF 342
           +Q   +LQ+ ++E  E L  ++          +    L    ++  P    F    G+  
Sbjct: 381 RQLVDSLQDVNRELDEKLQLQSEKLTRSYQAKERHLALLNTMLNSVPDFIYFKNIDGSFL 440

Query: 343 YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT 402
             N +F           +     +  + D  +       + +            S     
Sbjct: 441 GCNKAFEAYIGCDQSALVGRR--IQDITDEYEQISILEKQVLQNR---------SNVQQR 489

Query: 403 IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
           +  + ++            N+    +   GI  +  + +     ++    +  S +E  +
Sbjct: 490 VDTDDKSYQ---LTIAPFYNEQQHLLGTMGIGRDITEQQQTLHALKASESKFRSAIEFAA 546

Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522
           +G+ +++ +  IL  N+A  KLF    + ++ +   +  + +    +   L ++L     
Sbjct: 547 NGVVLLSLDQTILQVNKAARKLF-TEQDVLVGEQLKLLFDDSQWQEIKTRLAQLLDDKKE 605

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKL--PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
             +  +TL        L L + +        S Y + + D+S   +        K  AE+
Sbjct: 606 --VYHLTLARGNLTSWLQLSVSLVWDEKRDPSYYVIHLQDVSALTKA-------KHNAER 656

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            +  KS F+A +SHEIRTPL A++G  +++  Q        R I+  +   ++   +L +
Sbjct: 657 ATLAKSRFIANLSHEIRTPLNAVLGLLDMLIEQGL----TQRQIQQTDQAKQAAQSLLLM 712

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI-PRILA 699
           +N +LD +++ES +  L   P ++ E V    SL      +K +         I P ++ 
Sbjct: 713 LNRMLDFARVESAQAELKLAPFTVVELVDICDSLTGPLCEQKGVEFIIDVDPLIAPSLIC 772

Query: 700 DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEK 755
           D   ++Q+  N+L+NA+ FT +G  I +       +     +   V+DTG G+   +  +
Sbjct: 773 DSIRLQQVLGNLLTNAVKFTHNGS-ITLKMELIEGDSTEQAICFSVKDTGSGINEADQLR 831

Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
               F Q   S     +G GLGL + K  V    G+  + S    G       
Sbjct: 832 LFDAFTQGDESSTRAHQGVGLGLAIVKHAVSLMGGEIAVNSEKGLGCEFYFSI 884



 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/169 (15%), Positives = 47/169 (27%), Gaps = 10/169 (5%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144
           F +  +  G     ++     IG     ++G R+ D++     D    I  +L++Q    
Sbjct: 429 FIYFKNIDGSFLGCNKAFEAYIGCDQSALVGRRIQDIT-----DEYEQIS-ILEKQVLQN 482

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
                  ++  +      L   P Y+  +   G  G G               K  + KF
Sbjct: 483 RSNVQQRVDTDDK--SYQLTIAPFYNEQQHLLGTMGIG--RDITEQQQTLHALKASESKF 538

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253
               E       +      I         L  +  V    +     DD 
Sbjct: 539 RSAIEFAANGVVLLSLDQTILQVNKAARKLFTEQDVLVGEQLKLLFDDS 587


>gi|222084231|ref|YP_002542757.1| two-component sensor histidine kinase protein [Agrobacterium
           radiobacter K84]
 gi|221721679|gb|ACM24835.1| two-component sensor histidine kinase protein [Agrobacterium
           radiobacter K84]
          Length = 824

 Score =  318 bits (814), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 133/726 (18%), Positives = 267/726 (36%), Gaps = 41/726 (5%)

Query: 110 AFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIE-----GTNLYVPIDLA 164
             +++G    +         +N      +   +W        I+     G +  + ++  
Sbjct: 115 RPELLGQLPVETGAP----QDNEFLAFGRWMKSWSAGELEKAIDKLRGSGQSFDIVVETN 170

Query: 165 ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDI 224
              I       SG R F  V      N+ RA    L  +   L        ++       
Sbjct: 171 REEILEAQGRISGGRAF--VRFI-ALNNLRAELAELKIERERLMTSISAFQNLLDAIDLP 227

Query: 225 FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY-----PLLTSEESSLPEQEDFHTIN 279
             Q+     L   N            D+ L+  +             S+ PE      I+
Sbjct: 228 VWQRDADGQLTWVNHAYGEAVEAVSPDEALREGREFLTTVARERIRASATPESPFHDKIS 287

Query: 280 LNQYTKKQYFGTLQNNSKESFEYLSH--RNHPSLSAYFDEGENLTPETVDKCPIPFFVYS 337
              +  + +F  +          ++       ++ A  +       ET+D    P  ++ 
Sbjct: 288 TVVHGNRTFFDVIDVKLPNGSAGMAIDVSETETVRAELERTLKSHAETLDHLATPVAIFD 347

Query: 338 HGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA 396
               L + N +F+ L +   +  +E     S LLD  + +     +       D      
Sbjct: 348 GDRRLQFYNQAFVQLWEL-DIAFLEKKPDNSELLDRLRSAKKLPEQLNWKTWKDG----- 401

Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
              + ++    +    +  +P  +  +        G      +    +  +E     L  
Sbjct: 402 ---VLSVYRALDTQSDLWHLPNGQILRVFATAHPQGGATWVFENLTEQVDLETRYNTLVV 458

Query: 457 I----LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
           +    ++  S+G+A+   +G I  +N A   L+               L +      +  
Sbjct: 459 VQGETIDHLSEGVAVFGPDGRIRLSNPAFRILWNITEIQAKPGTHIQTLAEACAPSYDRP 518

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLS---LRIIIKKLPFSSCYSLTMHDISEWKQEKN 569
                  +   + +     S    +L S   L   +  LP +    LT  + ++  + + 
Sbjct: 519 DGWKRFAEQITSFDDERPSSQGTLELYSNLVLDYAVIPLPNAQ-TMLTFVNKTDSVRAER 577

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
            L+   +   K    K+DF+  VS+E+R+PLT IIGF++++K    G L N R  EY ++
Sbjct: 578 ALTEKNEALLKADELKNDFVQHVSYELRSPLTNIIGFTDLLKTPGIGSL-NDRQAEYIDH 636

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I  S  ++L +VND+LD++ +++G M L++  ++LD+ + E    +     E  + +  +
Sbjct: 637 ISTSSAVLLTLVNDILDLATVDAGIMRLNYSEIALDDLLDEVSMQIADRLQESGVTLEIT 696

Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749
              ++  ++AD + +KQI L +L+NA +F P G  I +        + +  V D G G++
Sbjct: 697 VPAHLGSVVADQQRLKQILLKLLTNAANFAPEGSTIALKCG-RDGTDFVFSVADKGPGIS 755

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
              +      F    + +  +  G GLGL + ++ V  + G+  I S P KGT +    P
Sbjct: 756 EEIMRTVFNRF--ASSGKGGKRSGAGLGLSIVESFVSLHDGQVSIESQPGKGTTVNCRIP 813

Query: 810 LYDTSH 815
             ++ H
Sbjct: 814 SAESPH 819



 Score = 47.3 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 40/386 (10%), Positives = 99/386 (25%), Gaps = 36/386 (9%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            W  DA G L  ++    + +   +         +    +                + + 
Sbjct: 228 VWQRDADGQLTWVNHAYGEAVEAVSPDEALREGREFLTTV----ARERIRASATPESPFH 283

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
                 + G   +  +    LP        +G  G  I          RA  +R  K  +
Sbjct: 284 DKISTVVHGNRTFFDVIDVKLP--------NGSAGMAI--DVSETETVRAELERTLKSHA 333

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
              +      ++      +         +++     +  E      ++L   +      E
Sbjct: 334 ETLDHLATPVAIFDGDRRLQFYNQAF--VQLWELDIAFLEKKPDNSELLDRLRSAKKLPE 391

Query: 266 E--------------SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
           +               +L  Q D   +   Q  +       Q     ++ + +      L
Sbjct: 392 QLNWKTWKDGVLSVYRALDTQSDLWHLPNGQILRVFATAHPQG--GATWVFENLTEQVDL 449

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
              ++    +  ET+D       V+   G +  +NP+F +L     +      G     L
Sbjct: 450 ETRYNTLVVVQGETIDHLSEGVAVFGPDGRIRLSNPAFRILWNITEIQA--KPGTHIQTL 507

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
                   +       +    T                ++L + +      N        
Sbjct: 508 AEACAPSYDRPDGWKRFAEQITSFDDERPSSQGTLELYSNLVLDYAVIPLPNAQTMLTFV 567

Query: 431 NGIEPEDVDTRINKR-KMEIEVMQLC 455
           N  +    +  + ++ +  ++  +L 
Sbjct: 568 NKTDSVRAERALTEKNEALLKADELK 593


>gi|171912848|ref|ZP_02928318.1| Multi-sensor Hybrid Histidine Kinase [Verrucomicrobium spinosum DSM
           4136]
          Length = 693

 Score =  318 bits (814), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 92/424 (21%), Positives = 175/424 (41%), Gaps = 18/424 (4%)

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
              +A+  I     N          +  E  D + ++  ++   ++L   LE +  G   
Sbjct: 108 ATVVALIKILPTAMNLPGMARLNQALTKEVSDRKASEAALQESSIRLALALEHSQLGDWS 167

Query: 468 INREGIILSTNRAVSKLFGYPVE-DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
            +    I++ +R  +++ G   +    R+     +  +        +   +       +E
Sbjct: 168 WDAANNIVAFSRRATEILGVAPDGRHSRESLRTDIHPDDREPTKLIVDAAIRTQTNYDVE 227

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKL-------SHAK 575
              +    +   + +    + +  S         T+ D +  K    +          A+
Sbjct: 228 YRVI-RPNDGTEIWVHAKGRGVYDSRGNIISVVGTIGDATSRKHRDREREVLLVKEREAR 286

Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
             A++ +  K +FLA +SHE+R PL AI+G++ +++ +   P          + I+R+  
Sbjct: 287 AEADRANRIKDEFLATLSHELRNPLNAILGWASILRTESSDP---DELAAGLDVIERNTQ 343

Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695
           L   ++ DLLD+S+I SGK++L  +P +L     E +  +++ A EKRI + T       
Sbjct: 344 LQAKLIADLLDMSRILSGKVHLDLKPTNLLSLAREGVETIRIMAEEKRITVTTPGDAPPV 403

Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755
            +  D   ++QI  N+L+N + FTP GG + +S      +   L V DTG G+    L  
Sbjct: 404 MVSGDSARLQQIIWNLLTNGVKFTPPGGSLDLSIIC-GQDRAELVVTDTGTGIDPQFLPH 462

Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFPLYDTS 814
               F Q   S   +  G GLGL + K + + + G   +FS    KG   ++  PL  + 
Sbjct: 463 VFDRFRQADASSTRKYGGLGLGLSIVKHLTEMHHGTVQVFSPGVGKGATFKVTLPLLRSP 522

Query: 815 HPHD 818
              D
Sbjct: 523 AETD 526



 Score = 55.0 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 34/393 (8%), Positives = 93/393 (23%), Gaps = 16/393 (4%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAF-KMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
           W+ DA   +   S    + +G     +     L         +P   I D   R  T Y 
Sbjct: 166 WSWDAANNIVAFSRRATEILGVAPDGRHSRESLRTDIHPDDREPTKLIVDAAIRTQTNYD 225

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREF---SGFRGFGIVHVNRVDNDPRALGKRLDK 202
                        + +      +Y          G  G      +R       L K  + 
Sbjct: 226 VEYRVIRPNDGTEIWVHAKGRGVYDSRGNIISVVGTIGDATSRKHRDREREVLLVKEREA 285

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
           +       +     +    +++ +  +         +  S           +      L 
Sbjct: 286 RAEADRANRIKDEFLATLSHELRNPLNAILGWASILRTESSDPDELAAGLDVIERNTQLQ 345

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
               + L +     +  ++   K     +L     E+   ++     +++   D    + 
Sbjct: 346 AKLIADLLDMSRILSGKVHLDLKPTNLLSLAREGVETIRIMAEEKRITVTTPGDAPPVMV 405

Query: 323 PETVDKCPIPFFVYSHGNLFYANPS----FLLLTKYKSVDDI--EIAGGLSTLLDAPKLS 376
                +     +      + +  P       ++      + +  +   G+          
Sbjct: 406 SGDSARLQQIIWNLLTNGVKFTPPGGSLDLSIICGQDRAELVVTDTGTGIDPQFLPHVFD 465

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
                      +     +  S   H  + +        F P        +        P 
Sbjct: 466 RFRQADASSTRKYGGLGLGLSIVKHLTEMHHGT--VQVFSPGVGKGATFKVTLPLLRSPA 523

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469
           + D  +    +   + +    ++ T   +  ++
Sbjct: 524 ETDGELF-ADLSAALEE---CVDLTGTSVLAVD 552


>gi|199597664|ref|ZP_03211092.1| Signal transduction histidine kinase [Lactobacillus rhamnosus
           HN001]
 gi|199591471|gb|EDY99549.1| Signal transduction histidine kinase [Lactobacillus rhamnosus
           HN001]
          Length = 636

 Score =  318 bits (814), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 84/383 (21%), Positives = 164/383 (42%), Gaps = 48/383 (12%)

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
             +L S+L   +DG+   +R G ++  N+          ED++       L       + 
Sbjct: 264 RRRLDSVLAHMTDGVIATDRRGNVIIINQTALSFLNTKNEDVIGVSILKLLNIAKDYTLR 323

Query: 511 HYLTEILS--LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568
             L       LD  + L+   +        +   +I ++  F S     +HD++E ++  
Sbjct: 324 DLLEHQTELLLDFSEQLDHDLILR------VDFSLIQRETGFISGLVAVLHDVTEQQKI- 376

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI-EYA 627
                           + +F++ VSHE+RTPLT++  + E + +   G   +P+   ++ 
Sbjct: 377 -------------DRDRKEFVSNVSHELRTPLTSVRSYIEALSD---GAWKDPKLAPQFL 420

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV------------ 675
           N      + ++ ++NDLL +S+++SG    + E V+L+E  +  +               
Sbjct: 421 NVTQEETDRMIRMINDLLSLSRLDSGTSKFNLETVNLNEFFNYVLDRFDMMLKTDNEHTG 480

Query: 676 ---------QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726
                    Q    +KR  I+    +    +  D     Q+  NI++NAI ++P GG I 
Sbjct: 481 EARTAQPLPQPDGQKKRYSIKREITHEDLWVEIDTDKFMQVIDNIMNNAIKYSPDGGVIT 540

Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
                  ++ VIL + D G+G+   +L K    F ++  ++  +  GTGLGL ++K +V+
Sbjct: 541 ARL-FQMHDHVILSISDQGLGIPRQDLGKIFDRFYRVDKARSRKQGGTGLGLAISKEVVE 599

Query: 787 ANMGKFYIFSTPAKGTLIEIIFP 809
           A  G+ ++ S   +G+   I  P
Sbjct: 600 ALHGRIWVDSQEGRGSTFYISLP 622


>gi|168231939|ref|ZP_02656997.1| PAS fold family protein [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|194472641|ref|ZP_03078625.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|194459005|gb|EDX47844.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|205333733|gb|EDZ20497.1| PAS fold family protein [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
          Length = 778

 Score =  318 bits (814), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 85/435 (19%), Positives = 177/435 (40%), Gaps = 17/435 (3%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L +          +L  +Q     +     I   +  +         ++ E
Sbjct: 81  EESRQRLSRLVQKLEEMRERDLKL-NVQLKDNIAQLNQEIADREKAEAELQETFEQLKVE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             +    + ++E +   L S L+A+ D +   N +      NRA+  L G   + ++   
Sbjct: 140 IKEREEAQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCY 554
                       +     ++   ++  T E+        +    +R +    ++      
Sbjct: 200 PEDVYSPEAAEKVIETDEKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGL 259

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+        +   E+ S  K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 260 MGFGRDITERKR-------YQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTD 312

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     +Y   I  S   + +I ND++D+ K+E  K+ L  +PV     +++  +L
Sbjct: 313 LTV----EQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFMADLENL 368

Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
             L A +K +         +P  ++ D   ++QI  N++SNA+ FT  G Q+ +   +  
Sbjct: 369 SGLQAQQKGLRFVLEPTLPLPHKVITDGTRLRQILWNLISNAVKFTQQG-QVTVRARYDE 427

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMGKF 792
            + +   V D+G+G+   E +K    + Q+ +S   +   GTG+GL +++ +     G  
Sbjct: 428 GDMLHFEVEDSGIGIPQDEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDI 487

Query: 793 YIFSTPAKGTLIEII 807
            + S P KG+   + 
Sbjct: 488 TVSSLPGKGSTFTLT 502


>gi|319646280|ref|ZP_08000510.1| sensor protein [Bacillus sp. BT1B_CT2]
 gi|317392030|gb|EFV72827.1| sensor protein [Bacillus sp. BT1B_CT2]
          Length = 736

 Score =  318 bits (814), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 101/744 (13%), Positives = 240/744 (32%), Gaps = 65/744 (8%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + +D    + + ++   K + +    ++     D    +  D  N        +     
Sbjct: 45  IFILDKQMNIIKANDAACKILQSQKKNLLNRSALDFLHAVPPDELNQNIHRFLERGYAKK 104

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +  +    G+  Y+    +          F     F ++                +K F 
Sbjct: 105 EVAIRLDNGSVKYIEFTASK---GIGEDCF-----FVVMRDISSKKILERERTINEKLFK 156

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPP--PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
            L         +  ++                 K+++S L        +           
Sbjct: 157 DLFHRAVEGIVIFDKQGCFIDANHSFCQSFEIEKSELSKLKLSQFVSPENKGRLDKIWNA 216

Query: 264 SEESSLPEQEDFHTIN-LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
                  + E    +        +    +   N              S+     + E   
Sbjct: 217 LFRRGKAKGELPVRLRSGEDRLFELTITSNILNGFYMSIMRDITEKRSMEKQLFKSEERF 276

Query: 323 PETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDI--------EIAGGLSTLLDAP 373
            E  +       +  + G +  AN S   + +      +        +        +   
Sbjct: 277 REVFENAMDAIILMNNDGRIVKANQSACKIFELPMDQLLNKKMTDFIDRTDQRYHAIQKQ 336

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
                     ++   ++            I ++ ++   +                    
Sbjct: 337 YDQKGEIRAELLFRMANGQYKELEFTSKRIMFDSQDLTIL-------------------- 376

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
                D +  ++++    ++   +   + DGI + N +  I+  N    K+   P+E + 
Sbjct: 377 -RNVSDRKRMEQELRESELKFRKVFNGSMDGIVLFNNQYDIIDANPLAGKILSIPLEQLK 435

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553
                  +              I      +    I    + ++++L        +   + 
Sbjct: 436 TSNLLDVISGYHIENAASPAKTIS---FEEMDNDIPFLLSDQKRILEFSFKRNIIQNMN- 491

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
               + D++E K+ + +L  +  +         +  A ++HEIR P+TA+ GF +++K  
Sbjct: 492 -LAMLRDVTERKELEERLRKSDTLHVV-----GELAAGIAHEIRNPMTALKGFIQLLK-- 543

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
             G + N  +  Y N I      +  I+ + L ++K ++    + +E  ++ + + + + 
Sbjct: 544 --GSIQNEDHALYFNVITSELKRIESIITEFLILAKPQA----IMYEEKNIVKIMQDTMD 597

Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
           L+   AN   + +     + IP I  +   +KQ+ +NIL NAI   P GG + +S     
Sbjct: 598 LLHAQANLDNVQMHLKCEDGIPLIYCEPNQLKQVFINILKNAIEVMPDGGNVYVSIKPKG 657

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
           ++ +I+ + D G+GMT  +L++  +PF         +  GTGLGL ++  +++ + GK  
Sbjct: 658 DDHIIVSLADEGIGMTEDKLKRLGEPFYTT------KERGTGLGLMVSYKIIEEHKGKIE 711

Query: 794 IFSTPAKGTLIEIIFPLYDTSHPH 817
           + S   +GT   +  P+       
Sbjct: 712 VESEEGRGTTFHLTLPIRQQHEEE 735



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 53/137 (38%), Gaps = 3/137 (2%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +    K++ ++ Q   +   T D I I++++  I+  N A  K+     +++L +    F
Sbjct: 21  KKENAKLKADLYQYELLFNGTLDAIFILDKQMNIIKANDAACKILQSQKKNLLNRSALDF 80

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
           L    P  +N  +   L     +   K          +  +     K     C+ + M D
Sbjct: 81  LHAVPPDELNQNIHRFLERGYAK---KEVAIRLDNGSVKYIEFTASKGIGEDCFFVVMRD 137

Query: 561 ISEWKQEKNKLSHAKKI 577
           IS  K  + + +  +K+
Sbjct: 138 ISSKKILERERTINEKL 154


>gi|170740045|ref|YP_001768700.1| multi-sensor signal transduction histidine kinase [Methylobacterium
           sp. 4-46]
 gi|168194319|gb|ACA16266.1| multi-sensor signal transduction histidine kinase [Methylobacterium
           sp. 4-46]
          Length = 606

 Score =  318 bits (814), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 108/379 (28%), Positives = 191/379 (50%), Gaps = 15/379 (3%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           +++    +   +L+   D +   +R G ++  +R   +L G   + +L +     +    
Sbjct: 198 RLQQASARNALLLDVIDDLVTWHDRGGGVVQASRGALRLAGAAPQTLLGRGLLGRIHVQD 257

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKE----EKLLSLRIIIKKLPFSSC-------- 553
                  +++  SLD   T++              +++ + +   ++P  +         
Sbjct: 258 RPAFLKAISDAGSLDGPVTVQVRLHTDLAASGEAGRVIWVEMRAHRVPPGARAGAPHHSA 317

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
                 D+SE ++   ++  A+  AE+  + KS FLA VSHE+RTPL AIIGFSE++  +
Sbjct: 318 VVAVTRDVSEQRRHAEEMEQARAEAERADAVKSRFLAVVSHELRTPLNAIIGFSEMLSAE 377

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
               L   R  EYA  I  SG  +L++VN LLD++KI+SG  +   EP  L   V+    
Sbjct: 378 ANLALPPERQREYAAIIHGSGRHLLEVVNALLDLTKIQSGSFDFAPEPFDLRALVNGCCD 437

Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
           L+QL A++  I +      ++P + AD R+ +Q+ +N+LSNA+ FTP GG+I ++     
Sbjct: 438 LMQLRADQGGIELMRDVPRDLPELTADPRACRQMLINLLSNAVKFTPRGGRITVAVRAIY 497

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ--QIRGEGTGLGLPLAKAMVDANMGK 791
           +  + + V DTGVG+   +L +   PF Q  +S       EGTGLGL + + +V  + G+
Sbjct: 498 D-RIEMSVTDTGVGIAEADLPRLGDPFFQAGDSAAYARMHEGTGLGLSVVRGLVGLHDGE 556

Query: 792 FYIFSTPAKGTLIEIIFPL 810
             + S+ A+GT + ++ PL
Sbjct: 557 LLLESSVARGTRVVVVLPL 575


>gi|322375300|ref|ZP_08049813.1| sensory box histidine kinase VicK [Streptococcus sp. C300]
 gi|321279563|gb|EFX56603.1| sensory box histidine kinase VicK [Streptococcus sp. C300]
          Length = 449

 Score =  318 bits (814), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 95/376 (25%), Positives = 171/376 (45%), Gaps = 33/376 (8%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           R+ +  +E E  +L SIL   +DG+   NR G I+  N    K  G   ED+L K     
Sbjct: 83  RLTQENLEQESKRLNSILSYMTDGVLATNRRGQIIMINDMAKKQLGVQKEDVLNKSILEL 142

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SL 556
           L+      +   +T+I  L +               + LSLR+    +   S +      
Sbjct: 143 LKIEDEYELRDLITQIPELTIDS--------QDVNGEYLSLRVRFALVRRESGFISGLVA 194

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            +HD +E ++E+ +                 F++ VSHE+RTPLT++  + E +     G
Sbjct: 195 VLHDTTEQEKEERERRL--------------FVSNVSHELRTPLTSVKSYLEAL---DEG 237

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV- 675
            L +P   ++        N ++ +V DLL +S+I++    L  E ++    ++  ++   
Sbjct: 238 ALYDPVAPDFIKVSLDETNRMMRMVTDLLHLSRIDNATTQLDVELINFTAFITFILNRFD 297

Query: 676 --QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
             +    EK+  +   +  N   I  D   + Q+  NIL+NAI ++P GG+I +S   T 
Sbjct: 298 KMRAQDQEKKYELVRDYPINSVWIEIDTDKMTQVIDNILNNAIKYSPDGGKITVSMKTTD 357

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
           ++ + L ++D G+G+   +L K    F ++  ++     GTGLGL +AK ++  + G  +
Sbjct: 358 DQMI-LSIKDQGLGIPKQDLPKIFDRFYRVDRARSRAQGGTGLGLAIAKEIIKQHNGFIW 416

Query: 794 IFSTPAKGTLIEIIFP 809
             S   KG+   I+ P
Sbjct: 417 AKSEYGKGSTFTIVLP 432


>gi|197103756|ref|YP_002129133.1| sensory box histidine kinase/response regulator [Phenylobacterium
           zucineum HLK1]
 gi|196477176|gb|ACG76704.1| sensory box histidine kinase/response regulator [Phenylobacterium
           zucineum HLK1]
          Length = 788

 Score =  318 bits (814), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 97/641 (15%), Positives = 202/641 (31%), Gaps = 48/641 (7%)

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM------------KNKVSSLTEYY 247
             K  +   +  +  S + +   D+     P   +R+            ++++       
Sbjct: 2   ARKSATRAADRAEMVSWLFEHSRDLMHVVGPDRCIRLVNPAWTELTGWREDELIGRRAIE 61

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
               D        +  S+   + E E    +             +  +            
Sbjct: 62  VFHPDDRPHMLARVAQSKVGVVYESEARVLLKDGSSCWVAARRQMMPDGSHIVSMRDATE 121

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGG 365
             +     D              I  + Y    G + + +   + +  +   +       
Sbjct: 122 QRAHRDEIDNARRTRKALGASAGIGIWTYEPALGRI-WWSDEIVAMVGFDPRE-----ND 175

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
                 A     + A       R+         R H + W R   + +      +     
Sbjct: 176 TPEAFRAMMHPRDRARTMQAFARAVENGEPLQ-REHRV-WARGRWMVVRVTVTTEPRPGG 233

Query: 426 ENMPQNGIEPEDVD--------------TRINKRKMEIEVMQLCSILEATSDGIAIINRE 471
                 GI  +  +               R  +R+ ++   +L   LEA   G+  I+  
Sbjct: 234 -VFALKGISEDITELAAARDAARHGEQQARKARREAQVNARRLKMALEAAEAGVYEIDHV 292

Query: 472 GIILSTNRAVSKLFGY--PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
                 +    ++ G      +                 +      +   D +       
Sbjct: 293 ARTFWASPEFERITGRRGSSYEEAVHLSYPGFHPEDLPHVRASFRALHRGDKKSGESFEA 352

Query: 530 LGSTKEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
                +     +R+        +         + D    K+++  L  A++ AE     K
Sbjct: 353 RIVRPDGAERWVRVYHHLKVGRNGRWLKAVGLVQDCDAHKRQELALKEAQRAAEAAGEAK 412

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
             FLA +SHEIRTPL  ++G   ++K+++             +     G ++ +++ND++
Sbjct: 413 GAFLANMSHEIRTPLNGVMGVLHILKSEQL----TDEGRSLLDEALSCGQMLAELLNDVI 468

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
           D SKIE+G++ L  EPV     V     L++  A  K + +       +  + +D   ++
Sbjct: 469 DFSKIEAGRLELACEPVDPKALVEGVARLLKPQAQAKGLQLIVDADARMGWVRSDPVRLR 528

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           Q   N++ NA+ FT  G  ++I         +   V DTGVG+      +  + F Q   
Sbjct: 529 QALFNLVGNAVKFTEKG-HVVIRCRLADAGVLRFEVEDTGVGIPEAAQARLFQRFNQADA 587

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           S   +  G+GLGL + K + +   G+    S   +G+   +
Sbjct: 588 STTRKFGGSGLGLAITKRLAEMMNGQVGFTSAEGRGSTFWL 628



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 36/384 (9%), Positives = 90/384 (23%), Gaps = 40/384 (10%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +     ++ ++    +  G    ++IG R  +V                K    +  +  
Sbjct: 30  VGPDRCIRLVNPAWTELTGWREDELIGRRAIEVFHPDDRPHMLARVAQSKVGVVYESEAR 89

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           +   +G++ +V      +P    +   S       +         R       +    L 
Sbjct: 90  VLLKDGSSCWVAARRQMMP--DGSHIVS-------MRDATEQRAHRDEIDNARRTRKALG 140

Query: 209 EIKKGHSSVEKEKYDIFSQQSP-----PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
                     +                    R  +   +       +D     + +    
Sbjct: 141 ASAGIGIWTYEPALGRIWWSDEIVAMVGFDPRENDTPEAFRAMMHPRDRARTMQAFARAV 200

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFG-----------TLQNNSKESFEYLSHRNHPS-- 310
                L  +   H +                        L+  S++  E  + R+     
Sbjct: 201 ENGEPLQRE---HRVWARGRWMVVRVTVTTEPRPGGVFALKGISEDITELAAARDAARHG 257

Query: 311 ------LSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIA 363
                                ++      + +      F+A+P F  +T  +     E A
Sbjct: 258 EQQARKARREAQVNARRLKMALEAAEAGVYEIDHVARTFWASPEFERITG-RRGSSYEEA 316

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
             LS     P+   +       L+R D    +  +    I         +      K  +
Sbjct: 317 VHLSYPGFHPEDLPHVRASFRALHRGD--KKSGESFEARIVRPDGAERWVRVYHHLKVGR 374

Query: 424 FPENMPQNGIEPEDVDTRINKRKM 447
               +   G+  +    +  +  +
Sbjct: 375 NGRWLKAVGLVQDCDAHKRQELAL 398



 Score = 38.1 bits (87), Expect = 6.0,   Method: Composition-based stats.
 Identities = 36/417 (8%), Positives = 96/417 (23%), Gaps = 38/417 (9%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS-------DILHIDPNNHIGDLLK 138
            + ID        S E  +  G       G    +             +         L 
Sbjct: 286 VYEIDHVARTFWASPEFERITGRR-----GSSYEEAVHLSYPGFHPEDLPHVRASFRALH 340

Query: 139 RQNTWYGKT---TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA 195
           R +   G++    +   +G   +V +           R     +  G+V           
Sbjct: 341 RGDKKSGESFEARIVRPDGAERWVRVYHHLK----VGRNGRWLKAVGLVQDCDAHKRQEL 396

Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYD-----IFSQQSPPPHLRMKNKVSSLTEYYAHK 250
             K   +      E K    +    +       +          ++ ++  SL +     
Sbjct: 397 ALKEAQRAAEAAGEAKGAFLANMSHEIRTPLNGVMGVLHILKSEQLTDEGRSLLDEALSC 456

Query: 251 DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310
             +L      ++   +      E        +   +     L+  ++     L       
Sbjct: 457 GQMLAELLNDVIDFSKIEAGRLELACEPVDPKALVEGVARLLKPQAQAKGLQLIVDADAR 516

Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYSHGNLF---YANPSFLLLTKYKSVDDIEIAGGLS 367
           +     +   L     +           G++        + +L  + +           +
Sbjct: 517 MGWVRSDPVRLRQALFNLVGNAVKFTEKGHVVIRCRLADAGVLRFEVEDTGVGIPEAAQA 576

Query: 368 TLLDAPKLSDNNAIKP-------VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
            L      +D +  +        + + +     +       + +               +
Sbjct: 577 RLFQRFNQADASTTRKFGGSGLGLAITKRLAEMMNGQVGFTSAEGRGSTFWLEVAAEPAE 636

Query: 421 AN----QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
           A     + P  + +        D   N+      +  L + +E  +DG   +     
Sbjct: 637 AQAPACEAPHAVLEGLRVLVVEDNATNRLIATKLLENLGASVETAADGYLGVEAAAR 693


>gi|258509807|ref|YP_003172558.1| two component sensor transduction histidine kinase [Lactobacillus
           rhamnosus GG]
 gi|257149734|emb|CAR88707.1| Two component sensor transduction histidine kinase [Lactobacillus
           rhamnosus GG]
 gi|259651070|dbj|BAI43232.1| two-component sensor kinase [Lactobacillus rhamnosus GG]
          Length = 636

 Score =  318 bits (814), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 84/383 (21%), Positives = 164/383 (42%), Gaps = 48/383 (12%)

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
             +L S+L   +DG+   +R G ++  N+          ED++       L       + 
Sbjct: 264 RRRLDSVLAHMTDGVIATDRRGNVIIINQTALSFLNTKNEDVIGVSILKLLNIAKDYTLR 323

Query: 511 HYLTEILSL--DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568
             L     L  D  + L+   +        +   +I ++  F S     +HD++E ++  
Sbjct: 324 DLLEHQTELLLDFSEQLDHDLILR------VDFSLIQRETGFISGLVAVLHDVTEQQKI- 376

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI-EYA 627
                           + +F++ VSHE+RTPLT++  + E + +   G   +P+   ++ 
Sbjct: 377 -------------DRDRKEFVSNVSHELRTPLTSVRSYIEALSD---GAWKDPKLAPQFL 420

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV------------ 675
           N      + ++ ++NDLL +S+++SG    + E V+L+E  +  +               
Sbjct: 421 NVTQEETDRMIRMINDLLSLSRLDSGTSKFNLETVNLNEFFNYVLDRFDMMLKTDNEHTG 480

Query: 676 ---------QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726
                    Q    +KR  I+    +    +  D     Q+  NI++NAI ++P GG I 
Sbjct: 481 EARTAQPLPQPDGQKKRYSIKREITHEDLWVEIDTDKFMQVIDNIMNNAIKYSPDGGVIT 540

Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
                  ++ VIL + D G+G+   +L K    F ++  ++  +  GTGLGL ++K +V+
Sbjct: 541 ARL-FQMHDHVILSISDQGLGIPRQDLGKIFDRFYRVDKARSRKQGGTGLGLAISKEVVE 599

Query: 787 ANMGKFYIFSTPAKGTLIEIIFP 809
           A  G+ ++ S   +G+   I  P
Sbjct: 600 ALHGRIWVDSQEGRGSTFYISLP 622


>gi|55981112|ref|YP_144409.1| sensor histidine kinase [Thermus thermophilus HB8]
 gi|55772525|dbj|BAD70966.1| sensor histidine kinase [Thermus thermophilus HB8]
          Length = 963

 Score =  318 bits (814), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 132/792 (16%), Positives = 247/792 (31%), Gaps = 90/792 (11%)

Query: 95  LKEISEELPKTIGNYAF-KMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIE 153
           +   S EL + +   A   ++   L +      +         L    T  G+   W   
Sbjct: 194 VSAASRELARALEPDAVMAVLAGILRERLGFYRVTVALVREGALVGHLTRRGEDLYWTEG 253

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
            + + +P+  +  P+    RE    R   +       +    +G  +      + E   G
Sbjct: 254 RSRIRLPVATSPDPMAQAVRE---RRTRIVPREALPPHLAEGVGASVAYVPVLVEEEALG 310

Query: 214 HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE 273
             +V+         +    ++ +   V+ +    A            L    +      E
Sbjct: 311 CVAVDHGPGGPPVTEEEVEYVELLAGVAGVALRNAQLYRERTALSLALAAERKRLSEVLE 370

Query: 274 D--------------------------------------FHTINLNQYTKKQYFGTLQNN 295
           +                                         +   +   +    T    
Sbjct: 371 ELPDGVVVLLGERGFANTRAREILGVEAEVGLGDLPATLAPALEGGRAEVRLGGRTYSVR 430

Query: 296 SKESFEYL-----SHRNHPSLSAYFDEGENLTPETVDKCPIP------------------ 332
            +   E              +     E    T   VD                       
Sbjct: 431 GRRLGEMRVLVLHEITERVRMERALREQAAFTQALVDLAQEALSAPGLEALAAAIARRLQ 490

Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDD--IEIAGGLSTLLDA--PKLSDNNAIKPVMLYR 388
               +   L     + L L       +  +     L   L+   P + +  A     L  
Sbjct: 491 VLFGAEEALVGMAEAELRLLYATRPLEGPLPRPNLLERALEEGKPLVLETLAEGSCALAE 550

Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
           +     A         +     L         +           +    ++       +E
Sbjct: 551 AWGLRSALVIPFRAQGFKGGLLLGYRRPRRWASGWEGRLAQVGLLLALVLEKARLLAYLE 610

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF--LEQNTP 506
            E  +L ++LE + D + +++ E  I   + +V  + GY  E   R        +     
Sbjct: 611 AEEERLRALLEHSQDVVYVLDEEARIRFVSPSVRAVLGYDPEGYRRAALDALAFVHPEDQ 670

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQ 566
                   E+L+     TL        ++   + +    + L                  
Sbjct: 671 ERARALFQELLA-RPEATLRGEFRLLHQDGTPIPVEAWGRNLLKDP-----------RVG 718

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
                    +   +    K +FLA VSHE+RTPL AI+G +E+++ +   P       E 
Sbjct: 719 GVVVNVRDLRPRLEAERLKGEFLAAVSHELRTPLAAILGLAELLRQEPLPP----EAQES 774

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
              I  S   + ++V++LLD S++E+G+  +   PV L   + E     Q  A    +  
Sbjct: 775 VELILESAFRLKNMVDNLLDTSRLEAGRFEVSRRPVHLKPLLLELARSFQGVARLSGVEF 834

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
           R      +P +  D   + Q+  N+L+NA  FTP GG + +       EEV + V+DTG 
Sbjct: 835 RVEV-EELPLMEVDPDRIVQVVGNLLANAFKFTPPGGSVRLWAGVR-GEEVWVEVQDTGP 892

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+   E+ +  + + +  +       GTGLGL ++K +V+A+ G+  + S   KG+L  +
Sbjct: 893 GIPKEEIPRLFQRYARAKHPGVRGVAGTGLGLFISKHIVEAHGGRIEVESEEGKGSLFRV 952

Query: 807 IFPLYDTSHPHD 818
           I PLY   HP D
Sbjct: 953 ILPLYGP-HPGD 963



 Score = 38.1 bits (87), Expect = 7.1,   Method: Composition-based stats.
 Identities = 21/245 (8%), Positives = 61/245 (24%), Gaps = 7/245 (2%)

Query: 67  YLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS--DI 124
           YL++E   +   +  +    + +D    ++ +S  +   +G          L  ++    
Sbjct: 608 YLEAEEERLRALLEHSQDVVYVLDEEARIRFVSPSVRAVLGYDPEGYRRAALDALAFVHP 667

Query: 125 LHIDPNNHIGDLLKRQ--NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFG 182
              +    +   L  +   T  G+  L   +GT   +P++     +    R         
Sbjct: 668 EDQERARALFQELLARPEATLRGEFRLLHQDGTP--IPVEAWGRNLLKDPRVGGVVVNVR 725

Query: 183 IVHVNRVDNDPR-ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS 241
            +         +      +  +         G + + +++      Q     +       
Sbjct: 726 DLRPRLEAERLKGEFLAAVSHELRTPLAAILGLAELLRQEPLPPEAQESVELILESAFRL 785

Query: 242 SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301
                       L+  ++ +        P   +                 ++       E
Sbjct: 786 KNMVDNLLDTSRLEAGRFEVSRRPVHLKPLLLELARSFQGVARLSGVEFRVEVEELPLME 845

Query: 302 YLSHR 306
               R
Sbjct: 846 VDPDR 850


>gi|304310910|ref|YP_003810508.1| sensory transduction histidine kinase [gamma proteobacterium HdN1]
 gi|301796643|emb|CBL44855.1| sensory transduction histidine kinase [gamma proteobacterium HdN1]
          Length = 1161

 Score =  317 bits (813), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 93/444 (20%), Positives = 177/444 (39%), Gaps = 54/444 (12%)

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
            ++L +  +    A+Q            +       +      + Q   + +  + G+  
Sbjct: 442 GSALEVMLLSLALADQINREKHMREAAQQQTLR--AQSAAMDSLKQYEMLYQNAAQGLFT 499

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
           ++ EG  L  N +V ++     + +L       ++        +  T  L          
Sbjct: 500 VDAEGRFLRFNDSVLQILAADKKQLLGSAARSGMKLQDF--FPNVSTRDLKSGRVSFENC 557

Query: 528 ITLGSTKEEKLLSLRIIIK----------------------------------------- 546
              G   +   +   + ++                                         
Sbjct: 558 EFEGRRADGSSVWCMVTLRTQVKQDSATSNPTDLLETASAGSVDANNVGANNVSTNNADA 617

Query: 547 --KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
               P S  Y  ++ D++E  +++      ++ AE+ +  KS FLA +SHEIRTP+  +I
Sbjct: 618 NKAQPDSVNYEGSLIDVTEGVEKEIA-QREREAAEQATQAKSAFLATMSHEIRTPMNGVI 676

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           G +E+++        + +   Y N I  SG  ++ ++ND+LD SKIESGK+ +    + L
Sbjct: 677 GMTELLRETPL----DLQQTGYVNTIHNSGMALVSLINDILDYSKIESGKLEVESISLDL 732

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGG 723
              + E  ++    +  K + +       I  RI++D   ++QI LN LSNA  FT +G 
Sbjct: 733 MALIDECAAVFAQQSISKNLGLYVDIDPQINDRIISDPARIRQILLNFLSNAFKFTETGS 792

Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
            + I     ++  + + VRDTG+G++  + EK  + F Q   S   +  GTGLGL ++K 
Sbjct: 793 -VRIRADSLADGRIRIGVRDTGIGLSQEQQEKLFQSFSQAEVSTTRKYGGTGLGLAISKR 851

Query: 784 MVDANMGKFYIFSTPAKGTLIEII 807
           + +   G+  + S   KG+     
Sbjct: 852 LAELMGGEVGVISESGKGSEFWFS 875


>gi|115377149|ref|ZP_01464363.1| histidine kinase PhoR1 [Stigmatella aurantiaca DW4/3-1]
 gi|310822860|ref|YP_003955218.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|115365858|gb|EAU64879.1| histidine kinase PhoR1 [Stigmatella aurantiaca DW4/3-1]
 gi|309395932|gb|ADO73391.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 452

 Score =  317 bits (813), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 103/410 (25%), Positives = 183/410 (44%), Gaps = 29/410 (7%)

Query: 403 IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ-LCSILEAT 461
           +   R+        P   + +  E     G           +  +  +  + L ++L+  
Sbjct: 60  VSKTRDRVEGTAVSPSPDSERMDEMASLEGAIDSLHSRLTTQNVLRTQEARTLTAVLDGM 119

Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
            +GI I + EG ++  N A+  +       I+ +     +       +N  +        
Sbjct: 120 VEGIWITDAEGTVIRHNDALRVMLQPGRGAIVGQRPLALIRDE---ALNDAVARACREGT 176

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
              LE    G       L+L I +  L       +   +D++E ++ +N           
Sbjct: 177 SSRLELTLEGLFP----LTLAIRVTPLGRDLPGSAAVFNDVTELRRLENV---------- 222

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI-EYANYIDRSGNLVLD 639
               + DF+A VSHE+RTP+TAI G++E ++    G L +P    +    I R    + +
Sbjct: 223 ----RKDFVANVSHELRTPITAIRGYAETLQT---GALQDPTVAPKMVEIIHRQSERLSE 275

Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA 699
           +V DLL++S++ES +M L F  VSL  A S A   V+  A  K I +     +++ R   
Sbjct: 276 LVEDLLELSRLESREMKLRFADVSLAVAASRAADTVKPKAEGKNIRLELHVPSDL-RARG 334

Query: 700 DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKP 759
           D R+V+Q+ LN+L NA+ +TP+GG++ +      N   ++RV+DTGVG+    L +  + 
Sbjct: 335 DERAVEQVLLNLLDNAVKYTPAGGRVDVR-GTQENGRCVVRVKDTGVGIEPKHLSRIFER 393

Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           F ++   +     GTGLGL + K ++ A  G+  + S P  G++  I  P
Sbjct: 394 FYRVDKGRSRDMGGTGLGLSIVKHLLGAMEGEVKVESQPNVGSVFVIFLP 443



 Score = 39.2 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 26/247 (10%), Positives = 58/247 (23%), Gaps = 22/247 (8%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            W  DA G +   ++ L   +      ++G R   +     ++  + +     R+ T   
Sbjct: 123 IWITDAEGTVIRHNDALRVMLQPGRGAIVGQRPLALIRDEALN--DAVARAC-REGTSSR 179

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
                        + + +   P+    R+  G     + +          + K      S
Sbjct: 180 LELTLE---GLFPLTLAIRVTPLG---RDLPGSA--AVFNDVTELRRLENVRKDFVANVS 231

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
           H             E     + Q P         V+       H+     +E    L   
Sbjct: 232 HELRTPITAIRGYAETLQTGALQDPT--------VAPKMVEIIHRQSERLSELVEDLLEL 283

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGT---LQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
                 +      +++              +   K     L   +           E + 
Sbjct: 284 SRLESREMKLRFADVSLAVAASRAADTVKPKAEGKNIRLELHVPSDLRARGDERAVEQVL 343

Query: 323 PETVDKC 329
              +D  
Sbjct: 344 LNLLDNA 350


>gi|29346857|ref|NP_810360.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|29338754|gb|AAO76554.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 785

 Score =  317 bits (813), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 99/520 (19%), Positives = 199/520 (38%), Gaps = 28/520 (5%)

Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDI 360
            L      +      +   +    +DK       V S G L YAN  F+           
Sbjct: 146 VLIMCRDITERVATQQQLEIFKSVLDKVSDSILAVSSDGTLVYANKQFMEEYGVT----- 200

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLY--RSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
               G   + D P       +    L   R +    +  A        +     ++    
Sbjct: 201 -QQMGTQKIYDLPVSMRTPELWEAKLKDIRDNGGSFSYRAAYVRKGEEKNRVHQVSTYLT 259

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR--EGIILS 476
           ++ +             +  D    + ++    + L  IL      + + +   +   L 
Sbjct: 260 QEDDTE----LIWFFTQDITDVIKKRDELRELNLLLDGILNNIPVYLYVKDPEDDFRYLY 315

Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQN-TPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
            N+A ++    P    + +       +            E++    R  +++  + +T E
Sbjct: 316 WNKAFAEHSKIPASRAIGRTDFEIFPERADAERFRRDDLELIRTHERIDMQETYVAATGE 375

Query: 536 EKLLSLRIIIKKLPFSSCY-SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
            +++     +  +            DI+ ++  + +L  A+  AE+    K+ FLA +SH
Sbjct: 376 TRIVQTLKALVPMEGREPLLIGISWDITNFQNIEQELIKARIKAEQSDRLKTAFLANMSH 435

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           EIRTPL AI+GFS ++               Y++ I+++  ++L ++ND+LD+SKIE+G 
Sbjct: 436 EIRTPLNAIVGFSNLL----PSAETLEEEKLYSSIINQNSEILLQLINDILDLSKIEAGT 491

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714
           +    +P++L E       + +    E  + +     +    I  D   + Q+  N L+N
Sbjct: 492 LEYVRQPMNLGEICRNIYQIHKDRVQE-GVTLILDNQDEDLIIEEDRNRIAQVITNFLTN 550

Query: 715 AIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           A  FT SG +I        N+ +   V+DTG+G+   ++      F ++ +      +GT
Sbjct: 551 AGKFTLSG-EIRFGFKVN-NQCIRFYVKDTGIGIAPDKVGHIFDRFVKLNSF----AQGT 604

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           GLGL + + +++   G+  + S   KG+      P  ++S
Sbjct: 605 GLGLAICRMIIEKIGGEIGVTSEIGKGSTFYFTIPYKESS 644



 Score = 48.9 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/127 (12%), Positives = 38/127 (29%), Gaps = 5/127 (3%)

Query: 457 ILEATSDGIAIINREGI-ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           IL +  D + + N + + I   +   +   G   +D         +       ++  + +
Sbjct: 52  ILNSLPDMLTVFNHDEVGIEVVSNEETNHVGISNKDFEGMHMRQMVPPEAYQNIHANMQK 111

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575
           +++                          I  L       +   DI+E    + +L   K
Sbjct: 112 VIATRTVSAAHHDM---DFNGSHHYYENRIFPL-DEEYVLIMCRDITERVATQQQLEIFK 167

Query: 576 KIAEKES 582
            + +K S
Sbjct: 168 SVLDKVS 174


>gi|95930270|ref|ZP_01313008.1| multi-sensor signal transduction histidine kinase [Desulfuromonas
           acetoxidans DSM 684]
 gi|95133733|gb|EAT15394.1| multi-sensor signal transduction histidine kinase [Desulfuromonas
           acetoxidans DSM 684]
          Length = 946

 Score =  317 bits (813), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 102/559 (18%), Positives = 207/559 (37%), Gaps = 56/559 (10%)

Query: 283 YTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG--ENLTPETVDKCPIPFFVYSHG- 339
               +      N+   + + L+        A       E       +       +     
Sbjct: 421 EAAMRAIEVSNNDLIAANKQLAREMVERQEAQQALENNEQKYRSLFELSYDAIVLADCDS 480

Query: 340 -NLFYANPSFLLLTKYKSVD-------DIEIAGGLSTLL--------DAPKLSDNNAIKP 383
             +  +N +   +  Y   +       D          L         +  + + +    
Sbjct: 481 HQILDSNHAAEEMFGYSHDEMQGMVPKDFSPINQADGSLSELKVSEKISRLIHEGHQFFE 540

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
               + D T   A   L  I  + + ++        +       +               
Sbjct: 541 WTHKKRDGTLFQAEVHLTLIPLDGKQAMLAVVRDVTQRKYAEAALVN------------A 588

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
               E    ++ +IL+A SDG+ +++  G I+  N++     G P  + L +     L  
Sbjct: 589 LADAESSRDKIDAILKAISDGLIVVDPLGRIILINQSAQDWLGLPEGETLNRQVATVLHD 648

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDI 561
           N  SV+   +    SL     +E       +  +L+++++   +          + + DI
Sbjct: 649 NDLSVLVGSILAGESLSRHCEVEVPIADQERN-RLMAVQVTAVQNDDKEISGTLILLRDI 707

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK-NQRFGPLGN 620
           +  +              +    K++F++  +HE+ TPLT I+GF+E++   +    +  
Sbjct: 708 TRER--------------ELDQLKNEFISSAAHELNTPLTVIMGFAELLVNREYRQSITL 753

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK-MNLHFEPVSLDEAVSEAISLVQLYA 679
            +  E+   I   G ++  IV+DLL + ++E G+ + L +    L   +   +   +   
Sbjct: 754 EQQQEFLETIRNKGEVLTSIVDDLLKLEQLEFGQSIQLQYHCFDLQLDIMTLVKHYEKTY 813

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
            + R ++          + AD   V Q+  N+LSNA+ F+P   +I IS     N + ++
Sbjct: 814 TDHRFIVMVE----PCELWADQERVGQVLDNLLSNAVKFSPPQTRIHISLQMK-NHQAVI 868

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            VRD G+GM    ++K    F +I  S   +  G GLGL +AK+++DA+ G   + S   
Sbjct: 869 TVRDEGIGMEQKNIDKVFDKFFRIDGSTTSK-GGLGLGLTVAKSIIDAHHGSIRVDSEVD 927

Query: 800 KGTLIEIIFPLYDTSHPHD 818
           +GT + +  P  +    HD
Sbjct: 928 RGTTVTLTLPCQNRGEEHD 946



 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 75/288 (26%), Gaps = 25/288 (8%)

Query: 93  GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-------NNHIGDLLKRQNTWYG 145
             + + +    +  G    +M GM   D S I   D        +  I  L+   + +  
Sbjct: 481 HQILDSNHAAEEMFGYSHDEMQGMVPKDFSPINQADGSLSELKVSEKISRLIHEGHQF-F 539

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           + T    +GT     + L  +P+  +           +V          A          
Sbjct: 540 EWTHKKRDGTLFQAEVHLTLIPLDGKQAML------AVVRDVTQRKYAEAALVNALADAE 593

Query: 206 HLHE--------IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK-DDVLKT 256
              +        I  G   V+     I   QS    L +    +   +      D+ L  
Sbjct: 594 SSRDKIDAILKAISDGLIVVDPLGRIILINQSAQDWLGLPEGETLNRQVATVLHDNDLSV 653

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQ-YTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
               +L  E  S   + +    +  +          +QN+ KE    L      +     
Sbjct: 654 LVGSILAGESLSRHCEVEVPIADQERNRLMAVQVTAVQNDDKEISGTLILLRDITREREL 713

Query: 316 DEGENLT-PETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEI 362
           D+ +N        +   P  V         N  +      +   +   
Sbjct: 714 DQLKNEFISSAAHELNTPLTVIMGFAELLVNREYRQSITLEQQQEFLE 761


>gi|306833966|ref|ZP_07467090.1| sensor histidine kinase VicK [Streptococcus bovis ATCC 700338]
 gi|304423967|gb|EFM27109.1| sensor histidine kinase VicK [Streptococcus bovis ATCC 700338]
          Length = 450

 Score =  317 bits (813), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 84/378 (22%), Positives = 163/378 (43%), Gaps = 35/378 (9%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           R+ +  +  E  +L SIL   +DG+   +R G I   N+   +      E+ L+      
Sbjct: 83  RLAQENLAQEKNRLASILSYMTDGVLATDRAGNITMINQTALQQLNLEHEEALQMNIVDI 142

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS----L 556
           L  ++    +  +         +T E +        + ++LRI        S +      
Sbjct: 143 LGADSTYSYHDLV--------SKTPEIVLNRRDGTGEFITLRIRFALNRRDSGFISGLIA 194

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            +HD +E ++E                 +  F++ VSHE+RTPLT++  + E +     G
Sbjct: 195 VLHDTTEQEKE--------------DRERRLFVSNVSHELRTPLTSVKSYLEAL---DEG 237

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV- 675
            L       +        N ++ +++DLL++S+I++  + L  E  +    ++  ++   
Sbjct: 238 ALKEDIAPSFIKVSLDETNRMIRMISDLLNLSRIDNQTVQLEVEMTNFTAFMTSILNRFD 297

Query: 676 ----QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
               Q   + K+  I   +      +  D   + Q+  NIL+NAI ++P GG+I +S   
Sbjct: 298 QIKSQHTISGKQYEIVRDYPIKSIWLEIDPDKMTQVLDNILNNAIKYSPDGGKITVSMKT 357

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
           T   ++I+ + D G+G+   +L      F ++  ++     G+GLGL +AK +V  + G 
Sbjct: 358 TET-QLIISISDEGLGIPKKDLPLIFDRFYRVDKARSRAQGGSGLGLAIAKEIVKQHKGF 416

Query: 792 FYIFSTPAKGTLIEIIFP 809
            +  ST  KG+   I+ P
Sbjct: 417 IWAQSTYGKGSTFTIVLP 434


>gi|283788151|ref|YP_003368016.1| aerobic respiration control protein (bifunctional two-component
           sensor kinase/response regulator) [Citrobacter rodentium
           ICC168]
 gi|282951605|emb|CBG91305.1| aerobic respiration control protein (bifunctional two-component
           sensor kinase/response regulator) [Citrobacter rodentium
           ICC168]
          Length = 778

 Score =  317 bits (813), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 84/435 (19%), Positives = 178/435 (40%), Gaps = 17/435 (3%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L +          +L  +Q     +     I   +  +         ++ E
Sbjct: 81  EESRQRLSRLVQKLEEMRERDLKL-NVQLKDNIAQLNQEIADREKAEAERQSTFEQLKVE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             +    + ++E +   L S L+A+ D +   N +      NRA+  L G   + ++   
Sbjct: 140 IKEREEAQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCY 554
                     + +     ++   ++  T E+        +    +R +    ++      
Sbjct: 200 PADVYSPEAAAKVIETDEKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGL 259

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+        +   E+ S  K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 260 MGFGRDITERKR-------YQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTD 312

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     +Y   I  S   + +I ND++D+ K+E  K+ L  +PV     +++  +L
Sbjct: 313 LTA----EQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFMADLENL 368

Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
             L A +K +         +P  ++ D   ++QI  N++SNA+ FT  G Q+ +   +  
Sbjct: 369 SGLQAQQKGLRFVLEPTLPLPHKVVTDGTRLRQILWNLISNAVKFTQQG-QVTVRVRYDE 427

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMGKF 792
            + +   V D+G+G+   E +K    + Q+ +S   +   GTG+GL +++ +  +  G  
Sbjct: 428 GDMLHFEVEDSGIGIPQDEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKSMGGDI 487

Query: 793 YIFSTPAKGTLIEII 807
            + S   KG+   + 
Sbjct: 488 TVASQTNKGSTFTLT 502


>gi|312961180|ref|ZP_07775685.1| ornithine cyclodeaminase [Pseudomonas fluorescens WH6]
 gi|311284838|gb|EFQ63414.1| ornithine cyclodeaminase [Pseudomonas fluorescens WH6]
          Length = 771

 Score =  317 bits (813), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 115/609 (18%), Positives = 232/609 (38%), Gaps = 30/609 (4%)

Query: 222 YDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTI--N 279
            +  + ++     R+      +   +    +   + +  LLT  E  LP   +       
Sbjct: 35  TERQTARAEEDVRRVLRVQGDIQAVHTLLAEAAASVRGYLLTRREDFLPSYLNARPQIEA 94

Query: 280 LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG 339
                 +            + + L       L     + +               + S+ 
Sbjct: 95  ALHRLDRNVRDPRVREQLSAIKPLIDGKVDGLEEMLKDRDATAESI------GAILISNK 148

Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLST----LLDAPKLSDNNAIKPVMLYRSDRTCIA 395
           ++  A    +          +      ++     L               +         
Sbjct: 149 HILDALRQHISSMLTLEESLLAERSAAASETRQRLLLSTWLAAICGLFGAIVAVLFLSKG 208

Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
             AR+  +Q N +       +  +   Q         +    V     +R +     +L 
Sbjct: 209 IVARVQNVQRNAQRLALGQPLLAQPPEQDEIGQLGTRLVEAGVLLAERERALRDNEERLR 268

Query: 456 SILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
            I++   D GI  ++  G + S N    ++ GY  ++I+ + F++F              
Sbjct: 269 LIIDGVKDYGIFALDTAGHVTSWNNGAERIKGYTEQEIIGRHFSLFYLPEECPQHPEM-- 326

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNK 570
            +          +      K+       ++I            +S    DI++ +  +  
Sbjct: 327 ALREATRDGDYTEEGWRCRKDGTRFWASVVITAQYDGTGALRGFSKITRDITDRRAAEIA 386

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           L  A++ AE+ S  KS+FL+R+SHE+RTPL +I+GF++++               +  +I
Sbjct: 387 LRTAREEAERASRAKSEFLSRMSHELRTPLNSILGFAQLL-----DMDAAKTQKAHVGHI 441

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR--T 688
            R+G  +L ++N++LDI+KIE+G + L+  P+ L + + EA++LV   A +  I ++   
Sbjct: 442 LRAGQHLLTLINEVLDIAKIEAGSLALNIAPLPLTQVLQEALTLVSPMATDAGIELQPLP 501

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748
           + A +I  I+AD + + Q+ LN+LSNAI +    GQ+ I  T    + + + V D G G+
Sbjct: 502 TLAADIG-IVADRQRLTQVLLNLLSNAIKYNRRDGQVSIEVTV-DAQRIGVSVCDCGKGI 559

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
               L +   PF ++        EG+GLGL L+K++++   G+ ++ S    G+   +  
Sbjct: 560 AADHLGQLFTPFERLGADPN--VEGSGLGLALSKSLLENMDGQLHVHSQAGIGSRFTLEL 617

Query: 809 PLYDTSHPH 817
           P      P 
Sbjct: 618 PWVRLHAPQ 626



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 42/375 (11%), Positives = 92/375 (24%), Gaps = 32/375 (8%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN-TWY 144
            + +D  G++   +    +  G    ++IG              +  +      ++  + 
Sbjct: 279 IFALDTAGHVTSWNNGAERIKGYTEQEIIGRHFSLFYLPEECPQHPEMALREATRDGDYT 338

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            +      +GT  +  + + A   Y       GF    I              +   ++ 
Sbjct: 339 EEGWRCRKDGTRFWASVVITAQ--YDGTGALRGFSK--ITRDITDRRAAEIALRTAREEA 394

Query: 205 SHLHEIKKGHSSVEKEKYDIF-----------------SQQSPPPHLRMKNKVSSLTEYY 247
                 K    S    +                     +Q++   H+    +        
Sbjct: 395 ERASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDAAKTQKAHVGHILRAGQHLLTLINE 454

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
                 ++     L  +        ++  T+     T                  ++ R 
Sbjct: 455 VLDIAKIEAGSLALNIAPLPLTQVLQEALTLVSPMATDAGIELQPLPTLAADIGIVADRQ 514

Query: 308 HPSLSAY----------FDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSV 357
             +                +G+     TVD   I   V   G    A+    L T ++ +
Sbjct: 515 RLTQVLLNLLSNAIKYNRRDGQVSIEVTVDAQRIGVSVCDCGKGIAADHLGQLFTPFERL 574

Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
                  G    L   K    N    + ++         +  L  ++ +   SLA+  I 
Sbjct: 575 GADPNVEGSGLGLALSKSLLENMDGQLHVHSQAGIGSRFTLELPWVRLHAPQSLALPLID 634

Query: 418 FEKANQFPENMPQNG 432
            E     P      G
Sbjct: 635 SELKRPAPLTGAFQG 649


>gi|116493524|ref|YP_805259.1| PAS/PAC sensor signal transduction histidine kinase [Pediococcus
           pentosaceus ATCC 25745]
 gi|116103674|gb|ABJ68817.1| PAS/PAC sensor signal transduction histidine kinase [Pediococcus
           pentosaceus ATCC 25745]
          Length = 615

 Score =  317 bits (813), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 75/364 (20%), Positives = 152/364 (41%), Gaps = 27/364 (7%)

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
             +L S+L   +DG+   +R G I   N   +       + I+ K     L+      + 
Sbjct: 263 RRRLDSVLGYMTDGVLATDRRGRITIVNEMATDFLNLENDQIVGKSILDILDLRGTFTLR 322

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570
             L         Q +  ++          S  +I ++  F S     +HD++E ++    
Sbjct: 323 DLLEN-----QEQVVLDLSDDDQDLILHASFALIQRESGFISGLVCVLHDVTEQQKIDQD 377

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
                         +  F++ VSHE+RTPLT++  + E +    +          +    
Sbjct: 378 --------------RKRFVSNVSHELRTPLTSMKSYIEALVEGAW--KDPEVAPNFLKVT 421

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN-----EKRIL 685
               + ++ ++NDLL++S+++ G   L  E V+L+E  +  +    +        +K   
Sbjct: 422 QEETDRMMRMINDLLNLSRMDLGTARLEREYVNLNELFNHILDRFDMILKNSDKPDKNYS 481

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           I+  F      +  D   ++Q+  NI++NAI ++P GG I       ++  VI+ + D G
Sbjct: 482 IKRDFTRRDIWVEVDTDKIQQVLDNIMNNAIKYSPDGGIITCRL-LETHNHVIMSITDQG 540

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+    +      F ++  ++     GTGLGL ++K ++  + G+ ++ S   +G+   
Sbjct: 541 LGIPKDSISHIFDRFYRVDKARSRAQGGTGLGLAISKEVIQLHGGRIWVESREGEGSTFY 600

Query: 806 IIFP 809
           I  P
Sbjct: 601 ISLP 604


>gi|325291480|ref|YP_004277344.1| two component sensor kinase [Agrobacterium sp. H13-3]
 gi|325059333|gb|ADY63024.1| two component sensor kinase [Agrobacterium sp. H13-3]
          Length = 860

 Score =  317 bits (813), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 122/661 (18%), Positives = 243/661 (36%), Gaps = 34/661 (5%)

Query: 172 NREFSG---FRGFGIVHVNRVDNDPRALGK----RLDKKFSHLHEIKKGHSSVEKEKYDI 224
               SG   F  F  ++  R +     + +         F  L +  +        + ++
Sbjct: 214 QGRVSGGNAFARFVALNNLRAELAELQVERERLIASVSTFQELLDSIEQPVWRRNGEGEL 273

Query: 225 FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYT 284
                   H           +      + +  +K     +   S P  +   T+     T
Sbjct: 274 IWVNHAYAHAVDARDAEQTIQEKRELLNTVTRQKIRAAAT--PSSPYHDRISTVVSGNRT 331

Query: 285 KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFY 343
                  ++     +   +      +             ET+D    P  ++     L +
Sbjct: 332 FFDVV-DIKTAGGSAGIAIDATEAETTREEMKRVLKSHAETLDHLATPVAIFDGRQRLQF 390

Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403
            N +F  L  +  +  +E     S LLD  + +     +       +           ++
Sbjct: 391 YNQAFASLWGF-DLVFLESGPDNSELLDRLRTAGKLPEQLNWKNWKE--------TALSV 441

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI----LE 459
             + +    +  +P  +  +        G      +    +  +++    L  +    ++
Sbjct: 442 YRSLDTKTDLWHLPNGQTLRVIATAHPQGGATWVFENLTEQVDLQMRYNTLVKVQGETID 501

Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL 519
             ++G+A+   +G I  +N A   L+G   E          +E       +         
Sbjct: 502 HLAEGVAVFGADGRIRLSNPAFRALWGVTAEQAETGTHIRAVEAACTQSYDKPDGWRSFS 561

Query: 520 DLRQTLEKITLGSTKEEKLLS---LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKK 576
               + +          +LLS   L   I  LP +    LT  ++++  + +  L     
Sbjct: 562 QFITSFDDERPSRQGTLELLSGLVLDYAIIPLPDAQ-TMLTFVNMTDSVRAERALKEKND 620

Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
              K    K+DF+  VS+E+R+PLT IIGF++++K    G L + R  EY ++I  S ++
Sbjct: 621 ALLKADELKNDFVQHVSYELRSPLTNIIGFTDLLKTPGIGELTD-RQAEYLDHISTSSSV 679

Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696
           +L IVND+LD++ +++G M L++    L+E + +    +     E  I +      ++  
Sbjct: 680 LLTIVNDILDLATVDAGIMQLNYSENDLNELLDDVSVQIADRLQESGISLEIVAPAHLGS 739

Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKA 756
           ++AD + +KQI + +L+NAI+F P G  + +S   +   + +  V D G G+    L+  
Sbjct: 740 LVADHQRLKQILIKLLTNAINFAPEGSSVQLSCQRSE-GDFLFSVADKGPGIPEDMLKAV 798

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
              F    N  +    G GLGL + ++ V  + G   I S P  GT++    P     HP
Sbjct: 799 FDRFETRGNGGRRT--GAGLGLSIVESFVSLHHGTVSIDSRPGNGTIVTCRIP--SGVHP 854

Query: 817 H 817
           H
Sbjct: 855 H 855



 Score = 46.2 bits (108), Expect = 0.022,   Method: Composition-based stats.
 Identities = 27/286 (9%), Positives = 72/286 (25%), Gaps = 27/286 (9%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            W  +  G L  ++      +     +       ++ + +           ++   T   
Sbjct: 264 VWRRNGEGELIWVNHAYAHAVDARDAEQTIQEKRELLNTVT-------RQKIRAAAT--- 313

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRG-FGIVHVNRVDNDPRALGKRLDKKF 204
                P    +  +   ++    +    +     G  GI          R   KR+ K  
Sbjct: 314 -----PSSPYHDRISTVVSGNRTFFDVVDIKTAGGSAGIAIDATEAETTREEMKRVLKSH 368

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV---SSLTEYYAHKDDVLKTEKYPL 261
           +   +      ++   +  +         L   + V   S               +    
Sbjct: 369 AETLDHLATPVAIFDGRQRLQFYNQAFASLWGFDLVFLESGPDNSELLDRLRTAGKLPEQ 428

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN-------SKESFEYLSHRNHPSLSAY 314
           L  +         + +++          G               ++ + +      L   
Sbjct: 429 LNWKNWKETALSVYRSLDTKTDLWHLPNGQTLRVIATAHPQGGATWVFENLTEQVDLQMR 488

Query: 315 FDEGENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDD 359
           ++    +  ET+D       V+ + G +  +NP+F  L    +   
Sbjct: 489 YNTLVKVQGETIDHLAEGVAVFGADGRIRLSNPAFRALWGVTAEQA 534


>gi|302341574|ref|YP_003806103.1| PAS/PAC sensor hybrid histidine kinase [Desulfarculus baarsii DSM
           2075]
 gi|301638187|gb|ADK83509.1| PAS/PAC sensor hybrid histidine kinase [Desulfarculus baarsii DSM
           2075]
          Length = 940

 Score =  317 bits (813), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 110/739 (14%), Positives = 226/739 (30%), Gaps = 50/739 (6%)

Query: 94  YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIE 153
            L  ++E   +   + + K        +  +   +        +          T     
Sbjct: 86  RLAHVNETGLRLFQSPSKKDFARNFKQLLSVHSREALIESLAAMAAGRANMLLETSVHDR 145

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
                       +P           R    V             +  ++++  L      
Sbjct: 146 MGQKRHISLFWTIP---AAHAHDWSRLMITVADQTTRKAAEEALRESERRYRVLFHESPN 202

Query: 214 HSS-VEKEKYDIFSQQSPP----PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
               V+     I            + R +     + +     D  L       +   +  
Sbjct: 203 VMWLVDPADGAIIDVNQAACDFYGYRRQELLTMRVGQINTMGDQSLNAAMSDAVLGGQKR 262

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
              +       +          TL +             +        + EN      + 
Sbjct: 263 FEFRHRLANGQIRDVEVYAGPITLDHRRLIYSTVYDITANKQALEALKKAENDYRGIYEN 322

Query: 329 CPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
                   S  G L  ANP+   +  Y     +        +  A +L  + A +P++L 
Sbjct: 323 SQAGIMRSSPDGRLLAANPAMARIFGYPDAQTM----VAEVVDTARQLHADPAQRPLLLE 378

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
           R +R        L   +    + +  +                 G   +  ++   K  +
Sbjct: 379 RLERDGQ-VRDYLLRARRRDGSLVWCSVNMRAVRENDGRLKVIEGFVEDVSESVEAKEAL 437

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRKPFTVFLEQNTP 506
                   +I++ +   I I  ++ +++  NRA  ++ G       L  PF  ++     
Sbjct: 438 ARSEALYRAIVDNSLSAIYIF-QDDVMVFVNRAFCQMLGAAEPSQALGHPFWKYIHPADR 496

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEW 564
             + +      +                +  ++ + +   ++ +         + DI+E 
Sbjct: 497 QWVANRARR-RAEGEDMPPHYGFRCVRLDGSVIWVDMQAVRIEYQGRPAVLGNLIDITER 555

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           K    KL+ A+K+            + ++H+    L  I  + +V          N    
Sbjct: 556 KLLNEKLAQAQKM-----EAVGTLASGIAHDFNNILQTIGSYVQVGAENCAPGPDND--- 607

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
            +   IDR+     D++N LL  S+     +     PV+L++ V++ + +++     K I
Sbjct: 608 GWLGQIDRAVERAADLINRLLAFSR----NIQPQLRPVNLNDEVTQTLRILERTLP-KMI 662

Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT-------------- 730
            + T+   ++P I  D   ++Q+ +N+ +NA    P GG++ I T               
Sbjct: 663 RLETNLDPDLPLINGDAIQLEQVIVNLAANARDAMPDGGRLKIKTAAVELGKEFCATRPG 722

Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
                 V+L VRD+G GM    LE+A  PF     S +  G+G GLGL      +  + G
Sbjct: 723 LRPGPHVMLSVRDSGPGMDQAILEQAFDPFF----STKEIGQGVGLGLSQVYGTIKNHHG 778

Query: 791 KFYIFSTPAKGTLIEIIFP 809
                S P +G    I  P
Sbjct: 779 HIECESAPGQGARFAIYLP 797



 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 39/423 (9%), Positives = 98/423 (23%), Gaps = 41/423 (9%)

Query: 180 GFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK 239
           GF     + + +   AL    ++        +            +         L     
Sbjct: 43  GFWQCQASGLKDALAALWPGSEEGLRQRLRQEPAALDGLLAACRLAHVNETGLRLFQSPS 102

Query: 240 VSSLT-----EYYAHKDDVLKTEKYPLLTSEESSL---PEQEDFHTINLNQYTKKQYFGT 291
                         H  + L      +     + L      +                  
Sbjct: 103 KKDFARNFKQLLSVHSREALIESLAAMAAGRANMLLETSVHDRMGQKRHISLFWTIPAAH 162

Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFL 349
             + S+            +      E E        + P   ++     G +   N +  
Sbjct: 163 AHDWSRLMITVADQTTRKAAEEALRESERRYRVLFHESPNVMWLVDPADGAIIDVNQAAC 222

Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLS--------DNNAIKPVMLYRSDRTCIAASARLH 401
               Y+  + + +  G    +    L+                    ++           
Sbjct: 223 DFYGYRRQELLTMRVGQINTMGDQSLNAAMSDAVLGGQKRFEFRHRLANGQIRDVEVYAG 282

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
            I  +                             +    +     ++        I E +
Sbjct: 283 PITLDHRR-------------------LIYSTVYDITANKQALEALKKAENDYRGIYENS 323

Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
             GI   + +G +L+ N A++++FGYP    +         Q         L        
Sbjct: 324 QAGIMRSSPDGRLLAANPAMARIFGYPDAQTMVAEVVDTARQLHADPAQRPLLLERLERD 383

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM----HDISEWKQEKNKLSHAKKI 577
            Q  + +     ++  L+   + ++ +  +      +     D+SE  + K  L+ ++ +
Sbjct: 384 GQVRDYLLRARRRDGSLVWCSVNMRAVRENDGRLKVIEGFVEDVSESVEAKEALARSEAL 443

Query: 578 AEK 580
              
Sbjct: 444 YRA 446



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 35/383 (9%), Positives = 99/383 (25%), Gaps = 26/383 (6%)

Query: 86  TWNID-AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144
            W +D A G + ++++      G    +++ MR+  ++ +     N  + D +       
Sbjct: 204 MWLVDPADGAIIDVNQAACDFYGYRRQELLTMRVGQINTMGDQSLNAAMSDAVLGGQK-R 262

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            +       G      +++ A PI   +R       +  V+    +       K+ +  +
Sbjct: 263 FEFRHRLANG--QIRDVEVYAGPITLDHRRLI----YSTVYDITANKQALEALKKAENDY 316

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSP------PPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
             ++E  +           + +           P  +        T    H D   +   
Sbjct: 317 RGIYENSQAGIMRSSPDGRLLAANPAMARIFGYPDAQTMVAEVVDTARQLHADPAQRPLL 376

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
              L  +             + +          ++ N              S S    E 
Sbjct: 377 LERLERDGQVRDYLLRARRRDGSLVWCSVNMRAVRENDGRLKVIEGFVEDVSESVEAKEA 436

Query: 319 ENL----TPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
                      VD      +++    + + N +F  +                       
Sbjct: 437 LARSEALYRAIVDNSLSAIYIFQDDVMVFVNRAFCQMLGAAEPSQALGHP----FWKYIH 492

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
            +D   +      R++   +        ++ +             +    P      G  
Sbjct: 493 PADRQWVANRARRRAEGEDMPPHYGFRCVRLDGSVIWVDMQAVRIEYQGRP---AVLGNL 549

Query: 435 PEDVDTRINKRKMEIEVMQLCSI 457
            +  + ++   K+  +  ++ ++
Sbjct: 550 IDITERKLLNEKL-AQAQKMEAV 571



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 44/386 (11%), Positives = 106/386 (27%), Gaps = 23/386 (5%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNTWYG 145
                G L   +  + +  G    + +   + D +  LH DP     + + L+R      
Sbjct: 329 RSSPDGRLLAANPAMARIFGYPDAQTMVAEVVDTARQLHADPAQRPLLLERLERDGQVRD 388

Query: 146 KTTL-WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
                   +G+   V   +    +   +       GF  V       + +    R +  +
Sbjct: 389 YLLRARRRDGSL--VWCSVNMRAVRENDGRLKVIEGF--VEDVSESVEAKEALARSEALY 444

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQS---PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
             + +       + ++   +F  ++             +      Y H  D         
Sbjct: 445 RAIVDNSLSAIYIFQDDVMVFVNRAFCQMLGAAEPSQALGHPFWKYIHPADRQWVANRAR 504

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
             +E   +P    F  + L+          ++   +     L +    +     +E    
Sbjct: 505 RRAEGEDMPPHYGFRCVRLDGSVIWVDMQAVRIEYQGRPAVLGNLIDITERKLLNEKLAQ 564

Query: 322 TP--ETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
               E V         +   N+     S++ +         +  G L  +  A + + + 
Sbjct: 565 AQKMEAVGTLASGIA-HDFNNILQTIGSYVQVGAENCAPGPDNDGWLGQIDRAVERAADL 623

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
             + +   R          +L  +  N E +  +  +              +   P    
Sbjct: 624 INRLLAFSR------NIQPQLRPVNLNDEVTQTLRILERTLPKMIRLETNLDPDLPLING 677

Query: 440 TRINKRKMEIEVMQLCS-ILEATSDG 464
             I   ++E  ++ L +   +A  DG
Sbjct: 678 DAI---QLEQVIVNLAANARDAMPDG 700


>gi|156935733|ref|YP_001439649.1| aerobic respiration control sensor protein ArcB [Cronobacter
           sakazakii ATCC BAA-894]
 gi|156533987|gb|ABU78813.1| hypothetical protein ESA_03603 [Cronobacter sakazakii ATCC BAA-894]
          Length = 779

 Score =  317 bits (813), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 89/435 (20%), Positives = 182/435 (41%), Gaps = 17/435 (3%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L            +L  +Q     +     I   +  +         ++ E
Sbjct: 81  EESRQRLSKLVDKLEEMRERDLKL-NVQLKDNIAQLNQEIADREKAEAERQNMLEQLKVE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             +  + + ++E +   L S L+A+ D +   N +      NRA+  L G   + ++   
Sbjct: 140 MKEREVTQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLIGLK 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCY 554
                       +     ++   ++  T E+        +    +R +    ++      
Sbjct: 200 PHEVYAPEAAEKVLETDEKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGL 259

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+        +   E+ S  K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 260 MGFGRDITERKR-------YQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE 312

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     +Y   I  S   + +I ND++D+ KIE  K+ L  +PV     +++  +L
Sbjct: 313 LSA----EQEKYLKTIHVSAVTLGNIFNDIIDMDKIERRKVQLDNQPVDFTSFLADLENL 368

Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
             L A +K +         +P  +L D   ++QI  N++SNA+ FT  G Q+ +  ++  
Sbjct: 369 SGLQAQQKGLRFVMEPVRPVPHKVLTDGTRLRQILWNLISNAVKFTQQG-QVTVRVSYNE 427

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMGKF 792
           NE++   V D+G+G+   E +K    + Q+ +SQ  +   GTG+GL +++ +  +  G  
Sbjct: 428 NEQLRFEVEDSGIGIPQEEQDKIFAMYYQVKDSQGGKPATGTGIGLAVSRRLAKSMGGDI 487

Query: 793 YIFSTPAKGTLIEII 807
            + S P +G+   + 
Sbjct: 488 TVSSKPGQGSTFVLT 502



 Score = 42.7 bits (99), Expect = 0.26,   Method: Composition-based stats.
 Identities = 11/161 (6%), Positives = 35/161 (21%), Gaps = 8/161 (4%)

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIE 361
           +  +         ++  +     +D  P   F  +        N +  LLT       I 
Sbjct: 138 VEMKEREVTQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLIG 197

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
           +      +               +          +      + +                
Sbjct: 198 LKPH--EVYAPEAAEKVLETDEKVFRH-----NVSLTYEQWLDYPDGRKACFEIRKVPYY 250

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
           ++  +     G   +  + +  +  +E       + +   S
Sbjct: 251 DRVGKRHGLMGFGRDITERKRYQDALERASRDKTTFISTIS 291



 Score = 42.3 bits (98), Expect = 0.38,   Method: Composition-based stats.
 Identities = 16/124 (12%), Positives = 37/124 (29%), Gaps = 5/124 (4%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN-TWYGKTTLWPIE 153
               +  +    G    ++IG++  +V      +      + + R N +   +  L   +
Sbjct: 177 FSGCNRAMELLTGKSEKQLIGLKPHEVYAPEAAEKVLETDEKVFRHNVSLTYEQWLDYPD 236

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
           G       ++  +P Y R  +  G  GFG           +   +R  +  +        
Sbjct: 237 GRKACF--EIRKVPYYDRVGKRHGLMGFG--RDITERKRYQDALERASRDKTTFISTISH 292

Query: 214 HSSV 217
               
Sbjct: 293 ELRT 296


>gi|255589572|ref|XP_002535009.1| two-component sensor histidine kinase bacteria, putative [Ricinus
            communis]
 gi|223524203|gb|EEF27374.1| two-component sensor histidine kinase bacteria, putative [Ricinus
            communis]
          Length = 1204

 Score =  317 bits (813), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 109/662 (16%), Positives = 224/662 (33%), Gaps = 38/662 (5%)

Query: 163  LAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKY 222
             A    +        +R   +    +      AL     +  +      +    V +   
Sbjct: 430  AAGADGFEHAGAPHLYRKIPVARRQQALFPIDALRPWSSEGGAPPARRAQPVDPVIEAAT 489

Query: 223  DIFSQQSPPPHLRMKNKVS-----SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHT 277
                ++  PP   +  +            +        +   P L + E ++P +     
Sbjct: 490  RTALERYAPPGFVVDERGDVVQFRGDVSEFVAPASGEASLALPRLLNPELNVPVRTALIE 549

Query: 278  INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS 337
                    ++    L +                              + +    P     
Sbjct: 550  ARRTGQPVRRERVPLGDRRYALEVLPVGAEDLVPHFLVTLHPLPLETSAEPTMNPDLHSG 609

Query: 338  HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397
            HG L       L  T     D++E                    K +    ++       
Sbjct: 610  HGRLQE-----LERTVTTLSDELE-----------------ATQKQLKAVVAEFESANEE 647

Query: 398  ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
             R    +    N    +        +         +   + + R   ++++     L ++
Sbjct: 648  LRTANEEMLSTNEELQSANEELLLAKQELESANQELGSLNDELRTRNQQLDRANDDLSNL 707

Query: 458  LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
            +E     + +++++  +   +    +LFG+P + +  +P        +       L  ++
Sbjct: 708  VEGIPLPVVLLDKQLRLRHFSPQAQQLFGFPPDSV-GQPMAQL----SQMFSTGDLEHMV 762

Query: 518  SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAK 575
               ++   E        E     + +   +          L + DI E K+  ++   A+
Sbjct: 763  LSAVQGLAEVEHEYQDVEGHWWLVNVRAYRTTDDRIDGAVLAVQDIDELKRAVDRAQTAQ 822

Query: 576  KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK--NQRFGPLGNPRYIEYANYIDRS 633
            + AE  ++ K +FL  VSHE+R PL  I  ++ V+K  ++R     +         I R 
Sbjct: 823  RDAETANNAKDNFLGIVSHELRAPLNVIASWAAVLKTASERGLQTDDKTARRAVETILRQ 882

Query: 634  GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693
                  +++DLLD+S+I SG+  L  +PV     V   +   +  A  K I + +S  ++
Sbjct: 883  CQSQAALIDDLLDVSRITSGRFALDAQPVDFAATVRTVVEGHRPAATTKEITLISSGLHD 942

Query: 694  IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753
               +  D R ++Q+  N++ NA+ FTP+ G++ ++ T      + L V DTG+G+    L
Sbjct: 943  EAVVSGDARRLQQVVSNLIGNALKFTPNSGRVEVALT-RLGALIELSVADTGIGVNPDLL 1001

Query: 754  EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFPLYD 812
                  F Q   S+  +  G GLGL + K +V A+ G     S    +GT + +  PL  
Sbjct: 1002 PHLFDRFMQSDMSRTRQYGGLGLGLSIVKHLVAAHGGTVAASSEGEGRGTRLTVRLPLVQ 1061

Query: 813  TS 814
             +
Sbjct: 1062 CA 1063


>gi|222150272|ref|YP_002559425.1| two-component sensor histidine kinase [Macrococcus caseolyticus
           JCSC5402]
 gi|222119394|dbj|BAH16729.1| two-component sensor histidine kinase [Macrococcus caseolyticus
           JCSC5402]
          Length = 612

 Score =  317 bits (813), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 76/388 (19%), Positives = 170/388 (43%), Gaps = 28/388 (7%)

Query: 426 ENMPQNGIEPEDVDTRINKRKM--EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           + + +  +   ++  R+ + +   E E  +L S++   SDG+   +R G +   N    K
Sbjct: 238 DEIGELALTFNNLSKRVQEAQANTESEKRRLDSVITHMSDGVIATDRRGRVRIVNEMALK 297

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +     +D+  +     L           L +I    +    EK  L        +    
Sbjct: 298 MLDMNKDDVEGRHVLDILAIEAHYS-LDELQDIAGGIIIDINEKERLIVRASFSTI---- 352

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
            I+   F + Y   +HD++E    +N+              + +F+A VSHE+RTPLT++
Sbjct: 353 -IQDTGFITGYIAVLHDVTEQHHVENE--------------RREFVANVSHELRTPLTSM 397

Query: 604 IGFSEVIKNQRFGPLGNPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
             + E ++    G   +     ++ +      + ++ +VNDLL +SK+++   NL+ E +
Sbjct: 398 RSYIEALEE---GAWKDENLAPQFLSVTREETDRMIRLVNDLLQLSKMDNTDDNLNKELI 454

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
             +  + + I+  +  +  K          N   +  D   + Q+  N+++NA+ ++   
Sbjct: 455 DFNMFIHKIINRFE-MSEGKNATFIRDIPKNGIFVEIDPDKMTQVFDNVITNALKYSKGR 513

Query: 723 GQIIISTTHTS-NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
            ++       +    + ++++D G+G+   +++K    F ++  ++  +  GTGLGL ++
Sbjct: 514 KKVEFHVKQNTLFNRMTIQIKDNGIGIPLNKVDKIFDRFFRVDKARTRKMGGTGLGLAIS 573

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           K +++A+ G+ +  S    GT + I  P
Sbjct: 574 KEIIEAHNGRIWANSKEGYGTSVYITLP 601


>gi|198246231|ref|YP_002217299.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|197940747|gb|ACH78080.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
          Length = 778

 Score =  317 bits (813), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 85/435 (19%), Positives = 178/435 (40%), Gaps = 17/435 (3%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L +          +L  +Q     +     I   +  +         ++ E
Sbjct: 81  EESRQRLSRLVQKLEEMRERDLKL-NVQLKDNIAQLNQEIADREKAEAELQETFEQLKVE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             +    + ++E +   L S L+A+ D +   N +      NRA+  L G   + ++   
Sbjct: 140 IKEREEAQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCY 554
                       +     ++   ++  T E+        +    +R +    ++      
Sbjct: 200 PEDVYSPEAAEKVIETDEKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGL 259

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+        +   E+ S  K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 260 MGFGRDITERKR-------YQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTD 312

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     +Y   I  S   + +I ND++D+ K+E  K+ L  +PV     +++  +L
Sbjct: 313 LTA----EQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFMADLENL 368

Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
             L A +K +         +P  ++ D   ++QI  N++SNA+ FT  G Q+ +   +  
Sbjct: 369 SGLQAQQKGLRFVLEPTLPLPHKVITDGTRLRQILWNLISNAVKFTQQG-QVTVRARYDE 427

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMGKF 792
            + +   V D+G+G++  E +K    + Q+ +S   +   GTG+GL +++ +     G  
Sbjct: 428 GDMLHFEVEDSGIGISQDEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDI 487

Query: 793 YIFSTPAKGTLIEII 807
            + S P KG+   + 
Sbjct: 488 TVSSLPGKGSTFTLT 502


>gi|94263808|ref|ZP_01287614.1| PAS [delta proteobacterium MLMS-1]
 gi|93455819|gb|EAT05986.1| PAS [delta proteobacterium MLMS-1]
          Length = 1049

 Score =  317 bits (813), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 87/490 (17%), Positives = 185/490 (37%), Gaps = 40/490 (8%)

Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
           + ++    + +       +   +    L        +  +   R           +    
Sbjct: 274 WFIVAVLPAQEAFAPIREMQQRILWATLLLTLLAGGITWWMLRRELAPMLETAKILGEMA 333

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
            ++  +  +   + ++  + +       E +  R     +        ++ ++  +GI I
Sbjct: 334 ASNKPLQALTITRQDETGQLIGGFNRLLEALAQRDV--ALRKSEASFRAVFDSMEEGIYI 391

Query: 468 INRE-GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
            + E   +L  N    ++FG   +D + +     L+            +I    L Q+  
Sbjct: 392 ADPESYELLHINENFKQIFG---KDAIGQKCYRVLQNRESPCPFCTNDKIFGDHLGQSYV 448

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSCY-SLTMHDISEWKQEKNKLSHAKKI-------- 577
                    ++         + P           +I++ KQ + +L  A +         
Sbjct: 449 WEFQN-EVNKEWYRCSDKAIRWPDGRMVRLEVAVNITKRKQAEEELLQANEQLENATARA 507

Query: 578 ------AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
                 AE  +  KS+FLA +SHEIRTP+   IG + ++ +            +YA  + 
Sbjct: 508 NELAVQAEAANHAKSEFLANMSHEIRTPMNGFIGMTMLLLDTEL----TEEQRQYAGIVK 563

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
            SG  +L ++ND+LD SKIE+GK+ +      L   + +  +      ++K + +  +  
Sbjct: 564 SSGESLLVLINDILDFSKIEAGKLEIETLDFDLQSLLDDFAATTAFKTHDKGLELLCAAE 623

Query: 692 NNIP-RILADLRSVKQIALNILSNAIHFTPSGGQ-IIIST----------THTSNEEV-- 737
            ++P ++  D   ++QI  N++ NA+ FT  G   I + T          +   +  +  
Sbjct: 624 PDVPVQLSGDPGRLRQILTNLVGNALKFTEKGEVAIRVKTVGEACQTGQTSLNDDASLLL 683

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
              VRDTG+G+   ++    + F Q+  S   +  GTGLGL ++K + +   G+  + S 
Sbjct: 684 RFSVRDTGIGIPADKIGMLFQQFTQVDASTTRKYGGTGLGLAISKHLAEMMGGEIGVESV 743

Query: 798 PAKGTLIEII 807
             +G+     
Sbjct: 744 EGQGSEFWFT 753


>gi|325288327|ref|YP_004264508.1| multi-sensor signal transduction histidine kinase [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324963728|gb|ADY54507.1| multi-sensor signal transduction histidine kinase [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 595

 Score =  317 bits (813), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 89/369 (24%), Positives = 177/369 (47%), Gaps = 31/369 (8%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED-ILRKPFTVFLEQ 503
           + +  +  ++ SIL++   G+  +N    I+  N     + G P    IL       +  
Sbjct: 253 KDLTEQNAKVDSILKSMQGGLIAVNIRQRIILINTMACDILGIPYHQGILGMNLIKLVRN 312

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDI 561
              + +   L + +  ++ Q      +    EEK++ +     K   +      +TM DI
Sbjct: 313 QQINKV---LRDSMEKNVPQM---ELINI--EEKIIRVYANPIKGHQNENMGGIVTMLDI 364

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           +  K+ +                +++F++ VSHE++TPLT+I GF + +K+   G + +P
Sbjct: 365 TNIKKLE--------------QMRTEFVSNVSHELKTPLTSIRGFIDTLKD---GAVNDP 407

Query: 622 RYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
               ++ + ID     +  ++N++L +S+IES K + + E V L   + E  S++Q  A 
Sbjct: 408 EVAGKFLDIIDIEAERLSRLINEILQLSEIESMKQDRNIEDVFLKPVIDEVFSILQQSAE 467

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
           E+++ +    A ++  I A+   +KQ+ +N++ NAI +    G + +     +  +V++ 
Sbjct: 468 ERKVGLHADIAESV-SIQANKDKIKQLLINLIDNAIKYNIENGSVTVKAE-QAGGKVLIS 525

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           VRDTG+G+    L++  + F ++   +     GTGLGL + K +V+   G+  + S P K
Sbjct: 526 VRDTGIGIEKEYLDRIFERFYRVDRGRSSELGGTGLGLSIVKHIVNLYQGRIDVDSDPGK 585

Query: 801 GTLIEIIFP 809
           GT  +I  P
Sbjct: 586 GTEFKIEIP 594


>gi|114568634|ref|YP_755314.1| PAS/PAC sensor signal transduction histidine kinase [Maricaulis
           maris MCS10]
 gi|114339096|gb|ABI64376.1| PAS/PAC sensor signal transduction histidine kinase [Maricaulis
           maris MCS10]
          Length = 829

 Score =  317 bits (813), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 112/735 (15%), Positives = 242/735 (32%), Gaps = 46/735 (6%)

Query: 102 LPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY--GKTTLWPIEGTNLYV 159
            P+  G+       +R  +       +P   + + L         G+ T       +L  
Sbjct: 84  APRIFGSSVALASLLRFAE--ANEGPNPAGILMEGLADYEARSAGGEETTLRRRFGDLSE 141

Query: 160 PIDLAALPIYSRNREFSGFRGFG-----IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214
                +L I   +  F    G       +V ++              +       + K  
Sbjct: 142 KGQPFSLTILGPSGRFLEVDGRAAGTQLVVWLSDATIRGLEESGARGRIEEARRLVSKDP 201

Query: 215 SSVEKEKYDIFSQQ---------SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
            +                            ++       +    K  +L      L +  
Sbjct: 202 LAFLDMLGRAPVPAWRMNATGRIEWANQAYVEAVEGDAVDAVIEKQTLLDAAMTDLASRA 261

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
             +    ++   + ++   +   F     +   +   L   +     A          +T
Sbjct: 262 TIAGEPVDEMRIVVIDGSRRGLKFLVFPVSGGAAGFALDVTDGEEAKAALARFRRAHDDT 321

Query: 326 VDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
           ++       V+     L + N +F  L K      +    G    LD  +       +  
Sbjct: 322 LNHMAEAVVVFDRSKRLNFHNKAFSNLFKLDD-AWLNERPGHGQFLDRMREKRLLPEQAD 380

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
                        A       +      +  +P  +  +        G      + + ++
Sbjct: 381 FGAWKTDELARYDAPPSEETPDE-----LWPLPDGRTLRVARQRHPLGGLMLIFEDKTDE 435

Query: 445 RKMEIEVMQL----CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
             +      L     + L+   + +A+    G +   N A   L+G+  E++  +P    
Sbjct: 436 LALRARYNTLINVQRATLDKLHEAVAVFGANGRLQLNNSAFEDLWGFDAEELDGQPDFDA 495

Query: 501 LEQN------TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554
           + +          V       +     +   +        + ++L+              
Sbjct: 496 VSETCAALFTDDRVWTDIKARVTDPSPQARKQVTGEMRRLDGRVLTYLTRPLP---DGAT 552

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
            +   D+++ ++ +  L    +  E     K++F+  VS+++RTPLT I G+++++    
Sbjct: 553 LICWDDVTDSRRIEEALRERAEALETSERIKTEFVEHVSYQLRTPLTTIGGYADMLAQGF 612

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
            G L + R  E  + I  +   +  +++D+LD++ I++G++ L    V L +   EA  L
Sbjct: 613 AGELSD-RQKEPMSAIQSAAAHLAKLIDDILDVAAIDAGQLELELGDVDLGDVAREAADL 671

Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
           V   A+   I +     + +  + AD   +KQ+++N+LSNAI    +GG + I     + 
Sbjct: 672 VAARADHHAIKLDVDIEDGLGLLRADRNRLKQVSMNLLSNAIRHVATGGAVTIG-ARRNG 730

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
           E++ L V+D G G+   +       F +          G GLGL L K + + + G   +
Sbjct: 731 EDITLWVKDDGEGIAPEKQASVFDRFARGER------GGAGLGLSLVKEIAELHGGWVEL 784

Query: 795 FSTPAKGTLIEIIFP 809
            S P +GTL+    P
Sbjct: 785 QSEPERGTLVSCHLP 799



 Score = 65.8 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 44/400 (11%), Positives = 106/400 (26%), Gaps = 52/400 (13%)

Query: 79  IPRTVRFTWNIDAHGYLKEISEELPKTI-GNYAFKMIGM-RLCDVSDILHIDPNNHIGDL 136
               V   W ++A G ++  ++   + + G+    +I    L D +              
Sbjct: 209 GRAPVP-AWRMNATGRIEWANQAYVEAVEGDAVDAVIEKQTLLDAAMTD----------- 256

Query: 137 LKRQNTWYGKTT----LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192
           L  + T  G+      +  I+G+   +   +   P+        G  GF +        +
Sbjct: 257 LASRATIAGEPVDEMRIVVIDGSRRGLKFLVF--PVSG------GAAGFAL--DVTDGEE 306

Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY---YAH 249
            +A   R  +              V      +        +L   +              
Sbjct: 307 AKAALARFRRAHDDTLNHMAEAVVVFDRSKRLNFHNKAFSNLFKLDDAWLNERPGHGQFL 366

Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE-------- 301
                K               E   +      +   + +        + + +        
Sbjct: 367 DRMREKRLLPEQADFGAWKTDELARYDAPPSEETPDELWPLPDGRTLRVARQRHPLGGLM 426

Query: 302 --YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVD 358
             +    +  +L A ++   N+   T+DK      V+ ++G L   N +F  L  +   +
Sbjct: 427 LIFEDKTDELALRARYNTLINVQRATLDKLHEAVAVFGANGRLQLNNSAFEDLWGF-DAE 485

Query: 359 DIEIAGGLSTL--LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
           +++       +    A   +D+     +    +D +  A       ++      L     
Sbjct: 486 ELDGQPDFDAVSETCAALFTDDRVWTDIKARVTDPSPQARKQVTGEMRRLDGRVLTYLTR 545

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
           P                  +  D+R  +  +      L +
Sbjct: 546 PLPDGA-------TLICWDDVTDSRRIEEALRERAEALET 578


>gi|86355698|ref|YP_467590.1| two-component sensor histidine kinase protein [Rhizobium etli CFN
           42]
 gi|86279800|gb|ABC88863.1| probable two-component sensor histidine kinase protein [Rhizobium
           etli CFN 42]
          Length = 860

 Score =  317 bits (813), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 138/721 (19%), Positives = 268/721 (37%), Gaps = 37/721 (5%)

Query: 107 GNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVP--IDLA 164
           GN   +++G    +       +     G  LK  +    +  +  +          ++  
Sbjct: 148 GNARPELLGQLPPETGAPQDGE-FLAFGLWLKSHSASELEKAIDRLRDGAQSFDMVVETI 206

Query: 165 ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDI 224
              I       SG R F  V      N+ RA    L  +   L        ++       
Sbjct: 207 RDEILEAQGRVSGGRAF--VRFV-ALNNLRAELAELRIERDRLMTSISAFQTMLDAIDMP 263

Query: 225 FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL--------PEQEDFH 276
             Q+ P   L   N+              +   +  L T     +        P  +   
Sbjct: 264 AWQRDPVGRLTWVNQAYGDAVEARSPQQAINEGREMLTTVARERIRAVTTPESPFHDTIS 323

Query: 277 TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY 336
           T+     T       ++     +   +   +  ++ A  +       ET+D    P  ++
Sbjct: 324 TVVRGNRTFFDVV-DVKVPGGSAGIAIDVSDIEAVRAELERTLKSHAETLDHLATPVAIF 382

Query: 337 SHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIA 395
                L + N +F+ L +   +  +E     S LL+  + +     +             
Sbjct: 383 DGERRLQFYNHAFVALWEL-DIAFLESRPDNSELLERLRAAKKLPDQLNWKSWK------ 435

Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
             A L   +     S  +  +P  +  +        G      +    +  +E     L 
Sbjct: 436 -EAALSVYRALDTQS-DLWHLPNGQTLRVFATAHPQGGATWVFENLTEQVDLETRYNTLV 493

Query: 456 SI----LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
            +    ++  S+G+A+   +G I  +N A   L+G    +         L +      + 
Sbjct: 494 KVQGETIDHLSEGVAVFGPDGRIRLSNPAFRALWGITETEAKPGTHIRALGEACAPSYDR 553

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLS---LRIIIKKLPFSSCYSLTMHDISEWKQEK 568
                   +L  + +     S    +L S   L   +  LP +    LT  ++++  + +
Sbjct: 554 PDGWKTFAELITSFDDERRSSQGTLELFSGLVLDYAVIPLPNAQ-TMLTFVNMTDSVRAE 612

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
             L+   +   K    K+DF+  VS+E+R+PLT IIGF+++++ Q  GPL N R  EY +
Sbjct: 613 RALTEKNEALRKADELKNDFVQHVSYELRSPLTNIIGFTDLLRTQGVGPL-NERQAEYID 671

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
           +I  S +++L +VND+LD++ +++G M L++  + L++ + +    +    +E  + +  
Sbjct: 672 HISTSSSVLLTLVNDILDLATVDAGIMRLNYAEIDLNDLLDDVSMQIADRLHESGVALEI 731

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748
           +    +  I+AD + +KQI L +L+NA +F+P G  I +   H    + +  VRD G G+
Sbjct: 732 TAPAYLGSIIADPQRLKQILLKLLANAANFSPEGASISLEC-HREGTDFVFSVRDRGPGI 790

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           +   +      F     S +    G GLGL +  + V  + G   I S P KGT +    
Sbjct: 791 SPDMIATVFDRFATGAKSGKR--GGAGLGLSIVDSFVSLHHGDVTIDSEPGKGTTVVCRI 848

Query: 809 P 809
           P
Sbjct: 849 P 849



 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/384 (9%), Positives = 101/384 (26%), Gaps = 34/384 (8%)

Query: 87  WNIDAHGYLKEISEELPKTI-GNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
           W  D  G L  +++     +      + I      ++ +            +    + + 
Sbjct: 265 WQRDPVGRLTWVNQAYGDAVEARSPQQAINEGREMLTTV-----ARERIRAVTTPESPFH 319

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
            T    + G   +  +    +P         G  G  I          RA  +R  K  +
Sbjct: 320 DTISTVVRGNRTFFDVVDVKVP--------GGSAGIAI--DVSDIEAVRAELERTLKSHA 369

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP----- 260
              +      ++   +  +         + +     +  E      ++L+  +       
Sbjct: 370 ETLDHLATPVAIFDGERRLQFYNHAF--VALWELDIAFLESRPDNSELLERLRAAKKLPD 427

Query: 261 ---LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS----KESFEYLSHRNHPSLSA 313
                + +E++L       T +   +        +   +      ++ + +      L  
Sbjct: 428 QLNWKSWKEAALSVYRALDTQSDLWHLPNGQTLRVFATAHPQGGATWVFENLTEQVDLET 487

Query: 314 YFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
            ++    +  ET+D       V+   G +  +NP+F  L      +     G     L  
Sbjct: 488 RYNTLVKVQGETIDHLSEGVAVFGPDGRIRLSNPAFRALWGITETEA--KPGTHIRALGE 545

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
                 +       +    T      R         + L + +      N        N 
Sbjct: 546 ACAPSYDRPDGWKTFAELITSFDDERRSSQGTLELFSGLVLDYAVIPLPNAQTMLTFVNM 605

Query: 433 IEPEDVDTRINKR-KMEIEVMQLC 455
            +    +  + ++ +   +  +L 
Sbjct: 606 TDSVRAERALTEKNEALRKADELK 629


>gi|95928312|ref|ZP_01311060.1| PAS/PAC sensor hybrid histidine kinase [Desulfuromonas acetoxidans
           DSM 684]
 gi|95135583|gb|EAT17234.1| PAS/PAC sensor hybrid histidine kinase [Desulfuromonas acetoxidans
           DSM 684]
          Length = 1001

 Score =  317 bits (813), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 100/643 (15%), Positives = 210/643 (32%), Gaps = 66/643 (10%)

Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270
                    +   +  +       +  +  +   +                   E +   
Sbjct: 232 AGQILETNGQGCLLLDRHEDDVVGQAVSSFAPEFQPDGRSSLSAARHYAETAMREGTQYF 291

Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330
             +    ++L +         L  +           +   +     E E       +   
Sbjct: 292 SWQYLRGVHLREADVVLQALRLNGDEVVLATMRDVTDFREVERSLRERERHYRAIFELGS 351

Query: 331 IPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLS----------TLLDAPKLSDNN 379
             F +Y  +G L  ANP+   +  Y+  + + +                 +     SD  
Sbjct: 352 NGFLLYRRNGQLVDANPAACRMYGYELEELLSLTLSERIHVDDCANYLDSVAQTINSDEG 411

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
               +     D   I     L +  W  E                   +       +  +
Sbjct: 412 CHMELRGLHRDGGLIHFDVYLESFSWRGE-------------------ILCLTTAVDVTE 452

Query: 440 TRINKRKMEIEVMQLCSILE---------------ATSDGIAIINREGIILSTNRAVSKL 484
            +   R  + E +++ ++L                     + I +  G  L+        
Sbjct: 453 RKKADRSAQCEEIRMEALLTLQQMLEFPEKQVCHYILGQALRICDSHGGFLAVTGGGCTE 512

Query: 485 FGYPVEDILRKPFTVF----LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
                 ++            L       + +Y  +            + +   ++  +++
Sbjct: 513 LTIKASNLKEGADWFERQIGLPDCRQPQLYNYRLQEWLDGSLNYDRYLQVPLLEDGHIVA 572

Query: 541 LRI-----IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK---KIAEKESSHKSDFLARV 592
           +                   L +    +  Q    +   +   + AE  +  KS+FLA V
Sbjct: 573 VIGLLDKEEPYSDFDIRQMVLLLQGTWQRLQRNRSILAMRQATEEAEAANRAKSEFLAVV 632

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHEIRTP+T  I   + +         +    +Y    + + + +L ++ND+LD SKIE+
Sbjct: 633 SHEIRTPMTVTIAALQQVLESSL----DDEQRQYLTMANDASDSLLSLINDILDFSKIEA 688

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNI 711
            K+ L   P +L E +   ++++ + A +K + +  +   ++P +L  D   V+QI +N+
Sbjct: 689 EKLVLEESPFNLRECIENVVAILGVNARQKGLRLELASNASLPDLLLGDQHRVRQILVNL 748

Query: 712 LSNAIHFTPSGGQ-IIISTTHTSNEE-VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
           +SNAI FT  G   + +      +   V + V DTG+G+ +   E+  + F Q  +S   
Sbjct: 749 VSNAIKFTEQGQVSVKVDAEQQDDHHLVHVAVCDTGIGIDDSLRERVFESFSQADSSTTR 808

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPA--KGTLIEIIFPL 810
           +  GTGLGL + K +V+   G   + S     +G+      P+
Sbjct: 809 KYGGTGLGLAICKGLVEQMGGVIGVESCQDDTQGSCFYFSLPM 851



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 56/142 (39%), Gaps = 9/142 (6%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           R +E + ++  ++ E T+DG+ ++ + G IL TN     L     +D++ +  + F  + 
Sbjct: 207 RGLENKELRYRTLFENTADGVFVV-KAGQILETNGQGCLLLDRHEDDVVGQAVSSFAPEF 265

Query: 505 TPS------VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM 558
            P          HY    +    +    +   G     +   + +   +L        TM
Sbjct: 266 QPDGRSSLSAARHYAETAMREGTQYFSWQYLRGVHL--READVVLQALRLNGDEVVLATM 323

Query: 559 HDISEWKQEKNKLSHAKKIAEK 580
            D++++++ +  L   ++    
Sbjct: 324 RDVTDFREVERSLRERERHYRA 345


>gi|325124951|gb|ADY84281.1| Putative histidine kinase [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 635

 Score =  317 bits (813), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 88/397 (22%), Positives = 173/397 (43%), Gaps = 36/397 (9%)

Query: 426 ENMPQNGIEPEDVDTRINK--RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           + + Q G     + T+I +   + E E  +L S+L   +DG+   +R G +   N+    
Sbjct: 249 DELGQLGAAFNTLSTKIERSNEQSESERRRLDSVLSHMTDGVIATDRHGNVSIMNQMAQD 308

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
                 ED ++KP +  L           ++       +  ++      T +E +L    
Sbjct: 309 FLDVKAEDAVKKPISQVLGLGEDYTSQDLISN------QSDMQVTVNAGTDDEMILHASF 362

Query: 544 IIKK--LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
            + K    F S     +HD++E  + +++              +  F++ VSHE+RTPLT
Sbjct: 363 TLIKRVTGFVSGAVCVLHDVTEQIKNEDE--------------QRQFVSNVSHELRTPLT 408

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           ++  + E +    +         ++ +   +    ++ +VNDLL +S+++ G   L  E 
Sbjct: 409 SVRAYIEALNEGAW--KDPEIAPQFLDVTQKETERMIRMVNDLLVLSRMDRGATKLEPEW 466

Query: 662 VSLDEAVSEAISLV---------QLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712
           V+  + VS  ++           +  ++ K  +I+    N    +  D   + ++  NI+
Sbjct: 467 VNFTDFVSHLLNRFDMIVEHDQGEAQSDTKEYVIKRDLGNQALWVEIDTDQMMRVIDNIM 526

Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           +NAI ++P GG I +  T   N +++L + D G+G+   +L K    F +   ++     
Sbjct: 527 NNAIKYSPDGGTITVRLTQNQN-QILLSISDQGLGIPRKDLGKIFDRFYRADKARSRAQG 585

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GTGLGL +AK +V A+ G+ +  S    G+   I  P
Sbjct: 586 GTGLGLAIAKEIVTAHGGRIWADSREGHGSTFYIALP 622


>gi|241665866|ref|YP_002984225.1| PAS/PAC sensor hybrid histidine kinase [Ralstonia pickettii 12D]
 gi|240867893|gb|ACS65553.1| PAS/PAC sensor hybrid histidine kinase [Ralstonia pickettii 12D]
          Length = 631

 Score =  317 bits (813), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 100/382 (26%), Positives = 172/382 (45%), Gaps = 21/382 (5%)

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILST-NRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
            +   +L + L+A+   +  ++         N     +FG   E +L +       +   
Sbjct: 109 RLSQQRLLAALQASPISLYDVDNTMHFTWVHNP----VFGLQPEQLLGRTVREVFGRRAA 164

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEW 564
           S +      +++      +E        +  +  + ++  +         +  + DISE 
Sbjct: 165 SRLTEAGQRVIATGTPTRVEFAFRRRHTQRVVYDVVVMPLRDDTGEIIGLTNAVIDISER 224

Query: 565 KQEK-------NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
           +Q +          S A++ AE+ S  K DFLA VSHE+RTPL A++G+++++       
Sbjct: 225 RQAEARRTQLLEAESRAREEAERASRLKDDFLATVSHELRTPLNAVLGWAQLL---NMRA 281

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
                +      I+RS    + +++DLLD+S I SGK+ L   PV L + +  A   ++ 
Sbjct: 282 YDEAMFKRGIEAIERSARTQVHLIDDLLDMSAILSGKVPLEIGPVDLADVLERARETIEP 341

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737
            A +K I I T F   +P +  D   +KQ+  N+L+NA+ FTP GG I +S        V
Sbjct: 342 MARQKNITIETEFLP-VPMLQGDAGRLKQVFWNLLANAVKFTPEGGHIRLSVHPAPEGVV 400

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY-IFS 796
              VRDTG+G+    L      F Q   S   R  G GLGL +AK +V+ + G+     S
Sbjct: 401 A-TVRDTGIGIEPTFLPHIFDRFQQADLSSTRRHGGLGLGLAIAKQLVELHHGRITAASS 459

Query: 797 TPAKGTLIEIIFPLYDTSHPHD 818
              +GT + +  PL+  + P +
Sbjct: 460 GADRGTTMAVSLPLH-AAQPGE 480



 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/342 (11%), Positives = 80/342 (23%), Gaps = 26/342 (7%)

Query: 105 TIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLA 164
             G    +++G  + +V            G  +    T       +        V  D+ 
Sbjct: 142 VFGLQPEQLLGRTVREVFGRRAASRLTEAGQRVIATGTPTRVEFAFRRR-HTQRVVYDVV 200

Query: 165 ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDI 224
            +P+     E  G     I           A   +L +  S   E  +  S ++ +    
Sbjct: 201 VMPLRDDTGEIIGLTNAVI--DISERRQAEARRTQLLEAESRAREEAERASRLKDDFLAT 258

Query: 225 FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYT 284
            S +   P        + L    A+ + + K     +  S  + +   +D   ++     
Sbjct: 259 VSHELRTPLN-AVLGWAQLLNMRAYDEAMFKRGIEAIERSARTQVHLIDDLLDMSAILSG 317

Query: 285 KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNL--F 342
           K        + +               +      +       +  P+P      G L   
Sbjct: 318 KVPLEIGPVDLADVL-------ERARETIEPMARQKNITIETEFLPVPMLQGDAGRLKQV 370

Query: 343 YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIA------A 396
           + N          +       GG   L   P      A         + T +        
Sbjct: 371 FWN-------LLANAVKFTPEGGHIRLSVHPAPEGVVATVRDTGIGIEPTFLPHIFDRFQ 423

Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
            A L + + +    L +                 +       
Sbjct: 424 QADLSSTRRHGGLGLGLAIAKQLVELHHGRITAASSGADRGT 465


>gi|149926094|ref|ZP_01914357.1| Signal transduction histidine kinase [Limnobacter sp. MED105]
 gi|149825382|gb|EDM84593.1| Signal transduction histidine kinase [Limnobacter sp. MED105]
          Length = 1023

 Score =  317 bits (813), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 99/554 (17%), Positives = 208/554 (37%), Gaps = 29/554 (5%)

Query: 273 EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN--LTPETVDKCP 330
            D   +  +          +  +  +    L+ ++     A     E+  +    + + P
Sbjct: 339 NDPKALEASMKELPTELQPISRDILDLTRGLTEKSQSLEHALKSAKESYWVVEALIVQAP 398

Query: 331 IPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389
           IP  ++    N   A+  ++          +        +      + +   +       
Sbjct: 399 IPIAMFDTEMNYVAASSRWVQTFANGHKGSLVGKNHYDVV-----PNLHERWRQAHRAGL 453

Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449
               I+A++          +++ + +                 +  +  + R+ +  +  
Sbjct: 454 AGESISATSD--PWTSQDGHTIWLDWAIEPWLKPDGHRGGIILMCKDVTEERLIRDSLAE 511

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK--PFTVFLEQNTPS 507
              +    +E + DG+         +  + +  +L GY   ++      +      +   
Sbjct: 512 SEERFKLAMEGSHDGLWDWEITTQKVYFSPSWKRLLGYEDHELSNDFGTWERLTAPDDLE 571

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISE 563
           +    L++ L    + + E     + K    + +      +            T  D + 
Sbjct: 572 LAKKALSDALDNPEKDSYEAEFCMAHKNGHWVQILAKALIVRDEHGKPTRVVGTHLDRTV 631

Query: 564 WKQEKNKLSHAKKIAEK---ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
             + +++L      A+     ++ KS FLA +SHEIRTPL  I+GF+  +          
Sbjct: 632 QLELESRLRETAIAAKAEKDSNAEKSRFLATMSHEIRTPLNGIMGFA-RLLEMDLPAGEL 690

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
                Y     +S   +  I+ND+LD SK+ESG + L   P  +++ +  +  L +L   
Sbjct: 691 KEQAGYL---VQSSETLSAILNDILDFSKLESGMVKLVDSPFLMEQLLKGSTELPRLTCE 747

Query: 681 EKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQ-IIIS-TTHTSNEE- 736
            K +    +      +I   D+  ++QI  N+LSNAI FT  G   + +S T  + NE+ 
Sbjct: 748 SKGVKFELNNKLGEHQIFSGDMGRLRQILQNLLSNAIKFTSHGKVSLTVSNTQISPNEDL 807

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           +   V DTG+G+   +     KPF Q+   ++ R  GTGLGL + K++++A  G+  + S
Sbjct: 808 ITFEVSDTGLGIPKEKQSLLFKPFSQVHTDRENRFGGTGLGLSIVKSLINAMGGEIQLES 867

Query: 797 TPAKGT--LIEIIF 808
            P +GT  +  +  
Sbjct: 868 EPGQGTQVMFSVTL 881


>gi|307822954|ref|ZP_07653184.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
           SV96]
 gi|307735729|gb|EFO06576.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
           SV96]
          Length = 1247

 Score =  317 bits (813), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 105/625 (16%), Positives = 201/625 (32%), Gaps = 105/625 (16%)

Query: 276 HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV 335
              +   Y        L + + +  +Y+S R   +     +         +D       +
Sbjct: 166 RRKDGELYWVDSTIAPLLDKTGKPKQYISIRRDTTKRKANELKLTSLKRALDASSEMVLI 225

Query: 336 YSH-GNLFYANPSFLLLTKYKSVDDIEIAG------GLSTLLDAPKLSDNNAIKPVMLYR 388
               G++ YANP+  L T +     +                 +   S     +P     
Sbjct: 226 TDAEGHIQYANPALCLFTGWAEDALMGQKPYVLDSSTADRQALSDMQSRLRCSEPWSGRL 285

Query: 389 SDRTCIAA-----------------SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
             R                       +R                                
Sbjct: 286 RGRRRAHVSGLHPVDNVSVLEREESDSRNSGQAVEDTLEYWAKTNITPILTANGTLSGYV 345

Query: 432 GIEPEDVDTRINKRKMEIE----VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
            I+ +       +  ++IE      +L +I E     + +   +  +   N     LFG 
Sbjct: 346 QIQHDVSKQVEEEAALQIESDDTAARL-AISEVLHQPLTL--EQRFVQVLN----ILFGL 398

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR----- 542
              D+ RK       ++       YL + ++      +E+           +++      
Sbjct: 399 KSFDLQRKGCVFLRVRDD-----EYLEKFVAHGKLDNMEQRIDFGDGLCGQVAVSRKFTV 453

Query: 543 ---------------IIIKKLPFSSCYSLTMHD---------ISEWK------------- 565
                          + I              D         I+  K             
Sbjct: 454 ADNCDCDHQPHGHYIVPIASGEDILGVLFVFTDAYPVQNESRIAMLKEVGEMMALALLQN 513

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           Q    L  A+  A + +  K++FLA +SHEIRTP+  ++G  +++++ +          +
Sbjct: 514 QANASLEAARDAALQVAHTKTEFLANMSHEIRTPMNGVLGMLDLLQDTQLSR----EQWD 569

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
             +    S   +L I+ND+LD SK+E+GK+ L     +L + V E  +L+   A+ K + 
Sbjct: 570 LIDIAANSAESLLTIINDILDFSKLEAGKIELEQIEFNLPDLVEEVCTLLSSRAHSKGLE 629

Query: 686 IRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEE------- 736
           +      ++P R   D   ++Q+  N++ NA+ FT  G   + +  +   + +       
Sbjct: 630 LNCFLPTDLPLRWQGDPTRIRQVLTNLIGNAVKFTEQGEVSVTVRVSKKDDTDAASAPGR 689

Query: 737 ----------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
                     +   V DTG+G+T     +  + F Q  +S   R  GTGLGL ++K +V 
Sbjct: 690 FAADTPSLTILRFEVVDTGIGITAEAQARLFQAFSQADSSTSRRYGGTGLGLSISKDLVM 749

Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLY 811
              G   + S   +G       PL 
Sbjct: 750 LMNGNIGVESALGQGANFWFTLPLA 774



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 47/340 (13%), Positives = 99/340 (29%), Gaps = 54/340 (15%)

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFV---YSHGNLFYANPSFLLLTKYKSVDDIEI 362
              P +     E      E +D       V      G + YAN  F  ++ Y   +    
Sbjct: 72  AIRPLVLQIVQEQTTSNRELLDALENHVLVSIADVQGRIVYANDMFCEVSGYTRNEL--- 128

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
             G    +      D + I+ +    +              +        +        +
Sbjct: 129 -TGQDHRVVNSGHHDQDYIRNMWNTIAGGQVWRGE---FCNRRKDGELYWVDSTIAPLLD 184

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
           +  +      I  +    + N+ K+      L   L+A+S+ + I + EG I   N A+ 
Sbjct: 185 KTGKPKQYISIRRDTTKRKANELKLTS----LKRALDASSEMVLITDAEGHIQYANPALC 240

Query: 483 KLFGYPVEDILRK----------------------PFTVFLEQNTPSVMNHYLTEILSLD 520
              G+  + ++ +                        +             +++ +  +D
Sbjct: 241 LFTGWAEDALMGQKPYVLDSSTADRQALSDMQSRLRCSEPWSGRLRGRRRAHVSGLHPVD 300

Query: 521 LRQTLEKITLGSTKEEKLL------SLRIIIKKLPFSS----CYSLTMHDISEWKQEKNK 570
               LE+    S    + +        +  I  +  ++     Y    HD+S+  +E+  
Sbjct: 301 NVSVLEREESDSRNSGQAVEDTLEYWAKTNITPILTANGTLSGYVQIQHDVSKQVEEEAA 360

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
           L   +          S+ L    H    PLT    F +V+
Sbjct: 361 L-QIESDDTAARLAISEVL----H---QPLTLEQRFVQVL 392



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/219 (11%), Positives = 57/219 (26%), Gaps = 10/219 (4%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD-ILHIDPNNHIGDLLKRQNTWYGKTT 148
           D  G +   ++   +  G    ++ G     V+      D   ++ + +     W G+  
Sbjct: 105 DVQGRIVYANDMFCEVSGYTRNELTGQDHRVVNSGHHDQDYIRNMWNTIAGGQVWRGEFC 164

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +G   +V   +A  P+  +  +   +    I                L +      
Sbjct: 165 NRRKDGELYWVDSTIA--PLLDKTGKPKQY--ISIRRDTTKRKANELKLTSLKRALDASS 220

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           E+         +        +P   L       +L     +  D    ++  L   +   
Sbjct: 221 EMVLIT-----DAEGHIQYANPALCLFTGWAEDALMGQKPYVLDSSTADRQALSDMQSRL 275

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
              +     +   +         + N S    E    RN
Sbjct: 276 RCSEPWSGRLRGRRRAHVSGLHPVDNVSVLEREESDSRN 314



 Score = 38.5 bits (88), Expect = 4.5,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 26/75 (34%), Gaps = 1/75 (1%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKRQNTWYGKT 147
            DA G+++  +  L    G     ++G +   + S        + +   L+    W G+ 
Sbjct: 226 TDAEGHIQYANPALCLFTGWAEDALMGQKPYVLDSSTADRQALSDMQSRLRCSEPWSGRL 285

Query: 148 TLWPIEGTNLYVPID 162
                   +   P+D
Sbjct: 286 RGRRRAHVSGLHPVD 300


>gi|298481294|ref|ZP_06999487.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
 gi|298272498|gb|EFI14066.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
          Length = 810

 Score =  317 bits (813), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 102/513 (19%), Positives = 192/513 (37%), Gaps = 36/513 (7%)

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
               D  E +        P    +Y   G L   N   L +       +         L 
Sbjct: 314 RLALDNSEKILRNIYKNLPAGVELYDKDGYLVDINDKELEIFGLSDKHEALGVN----LF 369

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARL----HTIQWNRENSLAMTFIPFEKANQFPE 426
           D P +      +   L   +    + +         +   R   + +T       +    
Sbjct: 370 DNPNIPLEVKER---LRAKEDVNFSINYDFSKINQYVDSRRNGIINLTTKVTALYDSQNR 426

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA---IINREGIILSTNRAVSK 483
            +    I  +  +T     K++        I +    G A   ++ R+G          +
Sbjct: 427 FINYLFINIDTTETTNAYTKIQEFENLFLLIGDYAKVGFAHFNVLTRDG---YAQDTWYR 483

Query: 484 LFGYPVEDILRKPF--TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS- 540
             G      + +       +     +V+ +++ E+       +L K      +  K    
Sbjct: 484 NLGEKEGTPMPQVIGVYTHVVPEDQAVLKNFVREVKE-GKATSLRKEVRVCRENGKYTWT 542

Query: 541 -LRIIIKKLPFSSCYS---LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
            + ++++               +DI+  K+ + KL  A+  AE+    KS FLA +SHEI
Sbjct: 543 SINVMVRDYRPQDGIIEMLCINYDITPLKETEQKLIIARDKAEELDRLKSAFLANMSHEI 602

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTPL AI+GFS ++              EY   +  +  L+L +++D+LD+SKIE+G  N
Sbjct: 603 RTPLNAIVGFSSLLAETD----SRSERQEYIKIVQENNELLLQLISDILDLSKIEAGTFN 658

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716
             +  V ++E  +E I  + +    K + +          +  D     Q+  N ++NA+
Sbjct: 659 FVYTNVDVNETCAEIIKSMSMKV-SKGVELIFEEPLPECYLYTDKNRFTQVISNFINNAL 717

Query: 717 HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
            FT  G  I +     S++++   VRDTG+G+   + +   + F ++        +GTGL
Sbjct: 718 KFTQQG-CITLGYKQVSHQKIKFYVRDTGMGIPEEKQKSIFERFVKLNTF----VQGTGL 772

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GL + K++V    G+  + ST   G+      P
Sbjct: 773 GLSICKSIVSQMGGEIGVDSTEGVGSCFWFTHP 805


>gi|239906417|ref|YP_002953158.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239796283|dbj|BAH75272.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 919

 Score =  317 bits (813), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 103/610 (16%), Positives = 194/610 (31%), Gaps = 68/610 (11%)

Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302
           +T       +             +           +     +    +    +  +     
Sbjct: 63  MTPASRADFEATMPRFVRDGRLTDKPYQLVASDGRVVEVLLSAVGEYDVTGDFRRSLAAL 122

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIE 361
           +             + E L     +       +    G     N +      Y++   + 
Sbjct: 123 VDVTGRRQAEEALAKSEELFRLAFENANEGLAIVGLDGQFLRVNKALCRFFGYEAEALLG 182

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
              G    L A      +     +     R       R    +      +          
Sbjct: 183 KTVGD---LAAEGHEAVSPRFISLALAGVREEFRFEKR---YRHALGEEVWGQVSAKLVR 236

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
           +   E +       +  + R    ++ +    L ++L           R G +   N A 
Sbjct: 237 SSGGEPLYFISHLLDVTEARRTAARLTLHANTLEALL-----------RLGRMRGANLAA 285

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD------LRQTLEKITL----- 530
              F       L    +     + P+     +    S           T E         
Sbjct: 286 LGEFVLSRGVALTASQSGLAAMSDPATGRFAVLAAGSEALAVFGLGEGTREFELRDSPSL 345

Query: 531 ---------------------GSTKEEKLLSLRIIIKKLPFSSCYS--------LTMHDI 561
                                    + +   L +  + +P+               +  +
Sbjct: 346 AMAVGDLRPVVSDTPCSRLATALRGDGQTFILAVAGRAMPYGDDDINRLTLLGEGVLRHV 405

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
            E ++ +  L+ A++ AE  S  KS FLA +SHEIRTPL+ IIG +++   Q       P
Sbjct: 406 KERRR-EEDLTTARRQAEAASQAKSGFLANMSHEIRTPLSGIIGLTQMTLTQN----PRP 460

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
              E    I  S   +L IVND+LD SKIE+GKM        L + +   +   Q  A +
Sbjct: 461 EIRENLELILDSSRSLLGIVNDILDFSKIEAGKMEFVPVDFDLRDTLDRTMKSFQFSARQ 520

Query: 682 KRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---V 737
           K + +       +P  +  D   + Q+  N++ NA+ FT  G ++ ++ +     +   V
Sbjct: 521 KGLTLGVRIDPQVPAMVHGDPDRIMQVVRNLVGNALKFTDQG-EVEVTLSLARPGDPMLV 579

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
              VRDTG+G+    L +  + F Q+ +++  R  GTGLGL +++ +V+   G   + S 
Sbjct: 580 SCSVRDTGIGIPEDRLHELFQVFSQLESTRAKRYGGTGLGLAISRRLVEMMGGAIDVESV 639

Query: 798 PAKGTLIEII 807
           P +G+     
Sbjct: 640 PGQGSTFTFT 649



 Score = 67.7 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 40/394 (10%), Positives = 96/394 (24%), Gaps = 33/394 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D  G L  ++    +T+G     ++G    D                  R      K  
Sbjct: 30  LDGQGRLLSVNAMWRQTLGYGLDTVVGRSFGDFMTPASRADFEATMPRFVRDGRLTDKPY 89

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
              +      V + L+A+  Y    +F   R    +              + ++ F    
Sbjct: 90  QL-VASDGRVVEVLLSAVGEYDVTGDFR--RSLAALVDVTGRRQAEEALAKSEELFRLAF 146

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL-----LT 263
           E      ++                       + L +              P      L 
Sbjct: 147 ENANEGLAIVGLDGQFLRVNKALCRFFGYEAEALLGKTVGDLAAEGHEAVSPRFISLALA 206

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
                   ++ +      +   +     ++++  E   ++SH    + +        L  
Sbjct: 207 GVREEFRFEKRYRHALGEEVWGQVSAKLVRSSGGEPLYFISHLLDVTEARRTAARLTLHA 266

Query: 324 ETVDKC------------PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
            T++               +  FV S G    A+ S L      +     +    S  L 
Sbjct: 267 NTLEALLRLGRMRGANLAALGEFVLSRGVALTASQSGLAAMSDPATGRFAVLAAGSEALA 326

Query: 372 APKLSDNNAIKPVM----LYRSDRTCIAASAR------LHTIQWNREN---SLAMTFIPF 418
              L +      +     L  +        +          ++ + +    ++A   +P+
Sbjct: 327 VFGLGEGTREFELRDSPSLAMAVGDLRPVVSDTPCSRLATALRGDGQTFILAVAGRAMPY 386

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
              +     +   G+     + R  +        
Sbjct: 387 GDDDINRLTLLGEGVLRHVKERRREEDLTTARRQ 420



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 17/142 (11%), Positives = 55/142 (38%), Gaps = 6/142 (4%)

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
            S+ E     +  ++ +G +LS N    +  GY ++ ++ + F  F+   + +     + 
Sbjct: 17  RSLYEKAPVMLHSLDGQGRLLSVNAMWRQTLGYGLDTVVGRSFGDFMTPASRADFEATMP 76

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIK----KLPFSSCYSLTMHDISEWKQEKNK 570
             +     +  +K       + +++ + +                  + D++  +Q +  
Sbjct: 77  RFVRDG--RLTDKPYQLVASDGRVVEVLLSAVGEYDVTGDFRRSLAALVDVTGRRQAEEA 134

Query: 571 LSHAKKIAEKESSHKSDFLARV 592
           L+ ++++      + ++ LA V
Sbjct: 135 LAKSEELFRLAFENANEGLAIV 156


>gi|218778398|ref|YP_002429716.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218759782|gb|ACL02248.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 750

 Score =  317 bits (813), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 84/435 (19%), Positives = 173/435 (39%), Gaps = 31/435 (7%)

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
                     E S  ++F+          ++    +E E  + +  ++ +      L S+
Sbjct: 192 FHSIPKYSREEVSHLISFLVKFTTYISKISLANLRLESEIQERQKVQKALHESQAMLNSV 251

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
           +    D + + + +G+ L  N     LFG   +DI+ K    F++  T  +   +  + +
Sbjct: 252 VRTIPDLVWLKDPDGVFLLCNSKFESLFGVSQKDIVGKTDYDFVDAETADIFREHDQKAV 311

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAK 575
           +       E+  + +   ++LL                      DI+E ++ + + +  +
Sbjct: 312 AKGEPSMNEEEVVFADGHKELLETIKTPMYNKEGRLVGVLGIGRDITERRRAEQEKARLE 371

Query: 576 KIAEKES--SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
           +   +             V+H++   LT I+G+SE++         N    +  N I ++
Sbjct: 372 EKYHQSQKVESIGRLAGGVAHDLNNLLTPILGYSELLLEDLDPEGPN---RQSVNEILQA 428

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693
           G    D+V  LL  S+    K  L ++ V+L+  V+   SL++     + I +    + +
Sbjct: 429 GIRARDLVCQLLAFSR----KQTLEYKAVNLNTMVNGFKSLLRRTI-REDIELMIRPSPD 483

Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH--------------TSNEEVIL 739
           I  I+AD   ++Q+ +N+  NA    P GG + I T                 + + +++
Sbjct: 484 ICNIMADAGQIEQVLMNLAVNASDAMPRGGILTIETARVYLDENYAKLHEDAKAGDYIMM 543

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V D G GM    L+   +PF           +GTGLGL     +V  + G  +++S   
Sbjct: 544 AVSDNGDGMDQKTLQHIFEPFFSTKG-----QQGTGLGLATVYGIVKQHGGNVWVYSEEG 598

Query: 800 KGTLIEIIFPLYDTS 814
           +GT  ++  P+ D +
Sbjct: 599 EGTTFKVYLPVKDDA 613



 Score = 68.1 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 25/245 (10%), Positives = 56/245 (22%), Gaps = 12/245 (4%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTW 143
             W  D  G     + +     G     ++G    D  D    D    H    + +    
Sbjct: 258 LVWLKDPDGVFLLCNSKFESLFGVSQKDIVGKTDYDFVDAETADIFREHDQKAVAKGEPS 317

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +  +   +G      ++    P+Y++     G  G G                RL++K
Sbjct: 318 MNEEEVVFADGHKE--LLETIKTPMYNKEGRLVGVLGIG--RDITERRRAEQEKARLEEK 373

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
           +    +++          +D+       P L     +    +        +       + 
Sbjct: 374 YHQSQKVESIGRLAGGVAHDL--NNLLTPILGYSELLLEDLDPEGPNRQSVNEILQAGIR 431

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
           + +             L           L          L       +        ++  
Sbjct: 432 ARDLVCQLLAFSRKQTLEYKAVN-----LNTMVNGFKSLLRRTIREDIELMIRPSPDICN 486

Query: 324 ETVDK 328
              D 
Sbjct: 487 IMADA 491


>gi|323493067|ref|ZP_08098201.1| histidine kinase [Vibrio brasiliensis LMG 20546]
 gi|323312715|gb|EGA65845.1| histidine kinase [Vibrio brasiliensis LMG 20546]
          Length = 1088

 Score =  317 bits (813), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 109/529 (20%), Positives = 202/529 (38%), Gaps = 38/529 (7%)

Query: 311 LSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIE-IAGGLST 368
                +E E       ++       +     +  AN + L L   +  D +    G + T
Sbjct: 157 QHQTINEHELQIGVIFEQAMDAMVLLNESNQILDANDAALALFHMERTDLLGLEIGSVVT 216

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
            L   ++ +  +  P+         +  +     I  +                      
Sbjct: 217 DLKPGQIYEQLSEVPMFQEVLLTQPLHLNDNNRRIALSGAIRYI----------SIKSQR 266

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS-------DGIAIINREGIILSTNRAV 481
                  +       K  ++    +L +++   +        GI   + +   +S +  +
Sbjct: 267 YILITLRDTSSEYSAKMALKRNQTELEAVVRNLNLATQAGGIGIWSWDFDSNEVSWDERM 326

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT-LEKITLGSTKEEKLLS 540
            +++G    D+    + ++ E+  P  ++H    +L      T           + K+  
Sbjct: 327 YQMYGVDP-DLCDNNYAMWQERVHPDDLDHAEQSLLHARETLTQFNSEFRIVLPDGKVRW 385

Query: 541 LRIIIKKLPFSS-----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
           ++     +                DIS+ K  ++ L +  + A   S  KS FLA +SHE
Sbjct: 386 IKAAADVIFAQDTAEAIGMGGVNIDISKEKNTQDVLRNESEAAHAASEAKSMFLANMSHE 445

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           IRTP+  ++G   ++                 + I  S   +L I+ND+LD SKIE+GKM
Sbjct: 446 IRTPMNGVVGMLSLLSETELKS----DQRTMVSSIKDSALTLLHIINDILDFSKIEAGKM 501

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSN 714
           +L   PV L   +   + ++ L A  K I +  ++  ++P  I++D   + QI LN++ N
Sbjct: 502 SLESVPVELQSLLERTLDVLHLQARNKGIEMYLTYDPSLPKMIMSDSVRLSQIMLNLIGN 561

Query: 715 AIHFTPSG----GQIIISTTHTSNE---EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
           A+ FT S     G+I +S +  SN     + L V D G+GMT  +L++  K F Q   S 
Sbjct: 562 AVKFTESTDERVGKIWVSASLGSNGIAPCIDLIVEDNGIGMTKEQLKRLFKSFTQADTST 621

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
                GTGLGL + ++++D   G   + S     +   I  P      P
Sbjct: 622 TRLYGGTGLGLSITQSLLDLMGGTISVESEFGVSSRFSIEVPFIAVESP 670



 Score = 70.8 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 41/314 (13%), Positives = 98/314 (31%), Gaps = 43/314 (13%)

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH----GNLFYANPSFLLLTKYKSVD 358
           LS  +   + +       L    ++  P    +        ++F+ANP+F    +    +
Sbjct: 3   LSLSSLLPVRSSSLPESELKTSVLNFMPDGILICDGVVGSHSVFFANPAFCQFYERNHSE 62

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
            I +   +  L           +  + L +  ++  +  +   ++    + +  +  +  
Sbjct: 63  LIGLK--VLNLFAPY-------LSTIQLNQLQKSLKSKESAQISLDIKGKEATRIIRLRI 113

Query: 419 EKANQFPENMPQNGI-EPEDVDTRINKRKMEIEVMQLCS------------------ILE 459
           E      +++    I + +  D    K+++     +L                    I E
Sbjct: 114 EPILHQDDSIQYLVITQTDITDAEKTKQELHQSNQRLKELVSSQHQTINEHELQIGVIFE 173

Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL 519
              D + ++N    IL  N A   LF     D+L       +    P  +   L+E+   
Sbjct: 174 QAMDAMVLLNESNQILDANDAALALFHMERTDLLGLEIGSVVTDLKPGQIYEQLSEVPM- 232

Query: 520 DLRQTLEKITLGSTKEEKLLSLR--IIIKKLPFSSCYSLTMHDIS-------EWKQEKNK 570
             ++ L    L      + ++L   I    +       +T+ D S         K+ + +
Sbjct: 233 -FQEVLLTQPLHLNDNNRRIALSGAIRYISIKSQRYILITLRDTSSEYSAKMALKRNQTE 291

Query: 571 LSHAKKIAEKESSH 584
           L    +     +  
Sbjct: 292 LEAVVRNLNLATQA 305


>gi|255292073|dbj|BAH90553.1| serine/threonine kinase [uncultured bacterium]
 gi|255292618|dbj|BAH89728.1| serine/threonine kinase [uncultured bacterium]
          Length = 2112

 Score =  317 bits (813), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 111/653 (16%), Positives = 244/653 (37%), Gaps = 40/653 (6%)

Query: 189  VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA 248
              +  R  G+  D+  ++    +   S    +   +F++ +   +LR      +      
Sbjct: 1163 AADRARRHGQANDEALAYELAARACESQGRADFARLFARNAYQAYLRWGAT--AKANQLE 1220

Query: 249  HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
             +   L  +   + +    S+ +  D    +    +             ++   L     
Sbjct: 1221 REFHSLIADHLSVSSRSTLSVGDLADLTVRDFQANSASFESTEFNERIVDTTTVLRAAQT 1280

Query: 309  PSLSAYFDEGE-NLTPETVDKCP----------------IPFFVYSHGNLFYANPSFLLL 351
             S     D+    L    ++                           G      P+    
Sbjct: 1281 ISGEILLDKVLTKLLRLALEHAGGQKACMLLAYDKRLFLEAIASVDGGATRRVTPAEPFE 1340

Query: 352  TKYKSVDDIEI--AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
               +  + I    A     L+ +   +++   +   + R     +     +H        
Sbjct: 1341 ATDEVPESIIQFVARTQEPLVLSDATAEDVFTQDPYVKRLQPLSVLCLPIIHRGDITGIL 1400

Query: 410  SLAMTFIPFEKANQFPENMPQNGIEPEDV-DTRINKRKMEIEVMQLCSILEATSDGIAII 468
             +   ++     +Q  E +     +     +       ++    +  ++ +   +G+  I
Sbjct: 1401 YVEHRWLTGVFTSQRVEVLALLASQAAISIENARLYADLQSTQDEYRALYDNAIEGLFRI 1460

Query: 469  NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528
            + +G+++S N  ++++ G+   D L+  +   +++   +            D +      
Sbjct: 1461 SPDGLLVSANPTLARILGFSSIDALQDEYRDLIDRAFLTNEQAGQFLSALEDQQLVNGFE 1520

Query: 529  TLGSTKEEKLLSLRIIIKKLPF---SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
              G T++ ++  + +  +             ++ DISE  + +      ++IAE  +  K
Sbjct: 1521 AQGVTRDGRVFWMALTARLNHDPELGDYIDGSLIDISERIEREQA-DKQRQIAEAATQAK 1579

Query: 586  SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
            S+FLA +SHEIRTP+ AI+GFS++          + +  EY   I  +   +L +V+D+L
Sbjct: 1580 SEFLANMSHEIRTPMNAIVGFSKLALESSL----DRKQHEYVTSIRNAAENLLTLVSDVL 1635

Query: 646  DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-------NNIPRIL 698
            D SKIE+GK+ L   P  L E ++E   L +     + + +                 + 
Sbjct: 1636 DFSKIEAGKLVLETRPFRLSETLTEVERLFRTEVRRRNLTLEIEDRTGEHPGFPEDGVLT 1695

Query: 699  ADLRSVKQIALNILSNAIHFTPSGGQII---ISTTHTSNEEVILRVRDTGVGMTNYELEK 755
             D   ++Q+ +N++ NA+ FT +GG +I   +   +     + L V DTG+G+   +L +
Sbjct: 1696 GDALRIQQVLVNLVGNAVKFTETGGIVIGAEVIAANHGQLVLNLSVTDTGIGIPQAQLAR 1755

Query: 756  AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
              + F Q   S   R  GTGLGL +++ +VD   G+ ++ ST  +G+  +   
Sbjct: 1756 LFESFEQAETSTTRRYGGTGLGLTISERLVDLMGGEIHVTSTVGEGSCFQFTL 1808



 Score = 46.9 bits (110), Expect = 0.015,   Method: Composition-based stats.
 Identities = 29/297 (9%), Positives = 71/297 (23%), Gaps = 18/297 (6%)

Query: 50   EQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNY 109
             Q+  + +N    ++      E   ++D     +   + I   G L   +  L + +G  
Sbjct: 1424 SQAAISIENARLYADLQSTQDEYRALYDNAIEGL---FRISPDGLLVSANPTLARILGFS 1480

Query: 110  AFKMIGMRLCDVSDILHI--DPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALP 167
            +   +     D+ D   +  +        L+ Q    G      +        + L A  
Sbjct: 1481 SIDALQDEYRDLIDRAFLTNEQAGQFLSALEDQQLVNGFEAQ-GVTRDGRVFWMALTARL 1539

Query: 168  IYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ 227
             +            G      + +    + +    K   + E      +  +   ++  +
Sbjct: 1540 NHDPE--------LGDYIDGSLIDISERIEREQADKQRQIAEA--ATQAKSEFLANMSHE 1589

Query: 228  QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287
               P +  +     +L      K     T       +  + + +  DF  I   +   + 
Sbjct: 1590 IRTPMNAIVGFSKLALESSLDRKQHEYVTSIRNAAENLLTLVSDVLDFSKIEAGKLVLET 1649

Query: 288  YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYA 344
                L     E                  E          +            +   
Sbjct: 1650 RPFRLSETLTEVERLFRTEVRRRNLTLEIEDRTGEHPGFPE--DGVLTGDALRIQQV 1704


>gi|56420003|ref|YP_147321.1| hypothetical protein GK1468 [Geobacillus kaustophilus HTA426]
 gi|56379845|dbj|BAD75753.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
          Length = 542

 Score =  317 bits (813), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 92/340 (27%), Positives = 165/340 (48%), Gaps = 22/340 (6%)

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
           FG   + +L K    FL +        Y                TL        +   + 
Sbjct: 75  FGIDPKQVLGKRLHDFLPEPIADQKEQYYRYTWETG-------ETLYYGGNINGIDYLVS 127

Query: 545 IKKLPFSSCYSLTM---HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
           ++ +         +    DI+E K  + ++  AK+ AEK +  KS+ ++R+SHEIRTPL 
Sbjct: 128 LRPIKKDGKVIEVVGSAIDITERKMMEQEMLRAKEEAEKANQAKSNLISRMSHEIRTPLN 187

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
            ++GF+++++     P    R  E+   I      +L+++N++LD+++IE+G++ L ++ 
Sbjct: 188 GVLGFAQLLE---MDPSLKGRQREFVQEILGGARHLLNLINEMLDLARIETGRLPLTYDV 244

Query: 662 VSLDEAVSEAISLVQLYANEKRILI--RTSFANNIPRILADLRSVKQIALNILSNAIHFT 719
           V  D+ + E+I LV+  AN+K I I  R+SF+  +  +  D   V+Q+ LN+L NAI + 
Sbjct: 245 VHPDDIIKESIKLVEPLANKKNIDIQARSSFSEQV-YLYTDATRVRQVLLNLLDNAIKYN 303

Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
             GG ++I   +   E+V++ V+D G+G+ + E E   +PF +I  +     +G G+GL 
Sbjct: 304 RDGGTVLIEGKY-DQEKVVIHVKDNGIGIPDEEQENIFEPFYRIKGT---HVDGNGIGLA 359

Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD--TSHPH 817
             K ++    G   + S    G+      P      S PH
Sbjct: 360 FVKQIIRLLGGTIEVKSKLGVGSDFSFSLPAVSYFHSWPH 399


>gi|330684530|gb|EGG96241.1| putative alkaline phosphatase synthesis sensor protein PhoR
           [Staphylococcus epidermidis VCU121]
          Length = 506

 Score =  317 bits (813), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 80/396 (20%), Positives = 171/396 (43%), Gaps = 29/396 (7%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEI--EVMQLCSILEATSDGIAIINREGIIL 475
                   +      +   ++  R+ K       +  +L + LE     + +I++ G I+
Sbjct: 131 VRVPESNVKETKALFVTTNELARRLQKLNNRQKIQSNRLKTTLENIPSSVLMIDKHGEIV 190

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
             N A  ++F  P + +  K +  F+      ++          +     +     +   
Sbjct: 191 VANSAYYEVFS-PDQSVENKSYIGFINDKIEKLIMESFR----TEKVIYEQIEVDINNVH 245

Query: 536 EKLLSLRIIIKKLPFS---SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
            K   +  +              + +HDI+  ++ +              + + +F+A V
Sbjct: 246 TKYFDVSCVPILSKSKKKLQGMVVVLHDITNLQKLE--------------NLRREFVANV 291

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHE++TP+T+I GF+E +               + N I +  N +  +V DLLD+S IE 
Sbjct: 292 SHELKTPITSIKGFAETLIEG--AKNDEDSLNMFLNIILKESNRIESLVMDLLDLSHIE- 348

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712
            +  +    ++L E     I  +Q  A  K I I ++   ++    A+   + Q+  N+L
Sbjct: 349 QQNEITTSYMNLSELAYTTIDNLQNQAQNKNITIESNIEQDVI-FKANENKIAQVITNLL 407

Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           SNAI+++ +  ++I+S  +   ++V L ++D G+G++  E +   + F ++  ++     
Sbjct: 408 SNAINYSTNDNKVIVSV-YREGKKVNLEIQDFGIGISAEEQKHIFERFYRVDKARSRDSG 466

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           GTGLGL + K +V+A+ G+  + S   +G+  ++ F
Sbjct: 467 GTGLGLSITKHIVEAHNGRISVVSRLNEGSTFKVTF 502


>gi|312891848|ref|ZP_07751354.1| PAS/PAC sensor signal transduction histidine kinase
           [Mucilaginibacter paludis DSM 18603]
 gi|311295682|gb|EFQ72845.1| PAS/PAC sensor signal transduction histidine kinase
           [Mucilaginibacter paludis DSM 18603]
          Length = 870

 Score =  317 bits (813), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 114/754 (15%), Positives = 258/754 (34%), Gaps = 61/754 (8%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR---QNT 142
           TW++D         E   +  G    ++      +    +H    + +   + +     +
Sbjct: 152 TWDLDVVNDTVRWDERCRELFGILGAEVT--TYEEALSCIHPADKHMVRQAINKALNPAS 209

Query: 143 WYGKTTLWPIEG--TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVD---NDPRALG 197
                  +            +       ++     + +R  GI      +   +      
Sbjct: 210 GSAYDIRYRTVAKLDGALRWVHCKGKAYFN---NGTAYRFAGIARDITAEVRTSQRERQL 266

Query: 198 KRLDKKFSH---LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254
             L +  +    + +++     +      +          R    +++   Y A + D +
Sbjct: 267 LTLVEDNASHMTIADMEGNLIYMNNAAKRLIGVTDTEDITR----LAAKDFYSAEELDRV 322

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN-NSKESFEYLSHRNHPSLSA 313
           + +    +T ++         + I   +   +  +  + +  S E     +         
Sbjct: 323 QNQIIRQITEKDGWRGNITLTNKITREEIPCEVSYMLIHDPESGEVIGRGAIARDLRPEI 382

Query: 314 YFDEGENLTPETVDKCPI-PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                       VD       +    G   Y N + L L  +   +    AG       +
Sbjct: 383 KAKTELKRLATIVDISEDFCNYCDLEGKTLYMNAAGLTLIGFGEQEV---AGSNMFAYHS 439

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ-FPENMPQN 431
              S     + +    S+      S  L  +       + +    F   ++     +   
Sbjct: 440 QNSSRLIRKEIMPQLLSEGR---WSGSLELVHQQTGEVIPIYKQLFIIRDEFTNIPVAFA 496

Query: 432 GIEPEDVDTRINKRKM-------EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
           GI  +       +RK+       +  V +L  + ++    +     +G +   N+   + 
Sbjct: 497 GIARDLRPELEFRRKLDDKNTILQNAVKELEFLADSVPSVVWTSKPDGHLDYINKRWYEH 556

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
               +E+ L + +   L  +      +     L        +       K+++     + 
Sbjct: 557 GATSIENSLGEGWHHALHPDDEQAARNAWNHSLQTGTP--YQIEFRIRDKKDQYRWWLVR 614

Query: 545 IKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
              L         +  T  DI+E K+ +                K +FL   SHE++TP+
Sbjct: 615 ALPLKNDDGKIVKWYGTNTDITEQKELQ--------------QQKDNFLGIASHELKTPI 660

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
           T+I  +++V++   F   G+ +  E    +DR  N +  +V DLLD++KI +G++  ++E
Sbjct: 661 TSIKAYAQVMQ-TLFTRSGDSKNAELVGKMDRQLNRLNSLVADLLDVTKINTGRLQFNYE 719

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720
               +E V E I  VQ   +   I    +F   +     D   + Q+  N+L+NAI ++P
Sbjct: 720 TFDFNEMVEEVIEDVQRTTSRHLIKKALAFKKEL---TGDRDRISQVVTNLLTNAIKYSP 776

Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
              +III T      E  L V+D G+G++  + ++  + F ++  +++    G GLGL +
Sbjct: 777 QANEIIIYTE-EHETEAKLCVQDFGIGISLDKKDRVFEQFYRVSGTREYTFPGLGLGLYI 835

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           +  ++    G+ ++ S   KG+      P+  ++
Sbjct: 836 SSEIIKRLGGRIWVTSVENKGSTFCFSLPIKQST 869



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/265 (14%), Positives = 79/265 (29%), Gaps = 15/265 (5%)

Query: 317 EGENLTPETVDKCPIPFFVYSHGN--LFYANPSFLLLTKYKSVDDIEIAGGL---STLLD 371
           E  +   ET +   +       G   L   N +     + + +  I  A        L  
Sbjct: 129 EARHKLAETEEWLTLSLSSADIGTWDLDVVNDTVRWDERCRELFGILGAEVTTYEEALSC 188

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
                 +   + +    +  +  A   R  T+         +        N         
Sbjct: 189 IHPADKHMVRQAINKALNPASGSAYDIRYRTVAKLDGALRWVHCKGKAYFN-NGTAYRFA 247

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
           GI  +       + +      QL +++E  +  + I + EG ++  N A  +L G    +
Sbjct: 248 GIARDIT----AEVRTSQRERQLLTLVEDNASHMTIADMEGNLIYMNNAAKRLIGVTDTE 303

Query: 492 ILRKPFTVFL--EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
            + +         +    V N  + +I   D  +    +T   T+EE    +  ++   P
Sbjct: 304 DITRLAAKDFYSAEELDRVQNQIIRQITEKDGWRGNITLTNKITREEIPCEVSYMLIHDP 363

Query: 550 FSS---CYSLTMHDISEWKQEKNKL 571
            S           D+    + K +L
Sbjct: 364 ESGEVIGRGAIARDLRPEIKAKTEL 388


>gi|229012419|ref|ZP_04169594.1| hypothetical protein bmyco0001_28630 [Bacillus mycoides DSM 2048]
 gi|228748778|gb|EEL98628.1| hypothetical protein bmyco0001_28630 [Bacillus mycoides DSM 2048]
          Length = 801

 Score =  317 bits (813), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 102/532 (19%), Positives = 212/532 (39%), Gaps = 47/532 (8%)

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVD----KCPIPFFV-YSHGNLFYANPSFLLL 351
            +  E +      +     +     T E ++           +    G++  AN ++  +
Sbjct: 294 GQVMEVVGSIVDITERKKVESELRATKELLESFIKHNVDAITISDREGHILQANKAYEKI 353

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN-RENS 410
             +   + I            P + D    + +   +   T  +   RL T++     + 
Sbjct: 354 FGWSLQEIIGKRL--------PCVPDFLMEESLGNIQKILTKESVVTRLETVRRRNDGSL 405

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK-------MEIEVMQLCSILEATSD 463
           L ++       +     +  + I  +  + +  +R+       ++   M+  +++E  +D
Sbjct: 406 LDVSLTVSPILDVRGNVLALSAICRDISERKQAERERHRLHQQLKDSEMKYRALIEQATD 465

Query: 464 GIAIINREG-----IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
            + ++           +  N    K FGY  E++L  PF   + Q++  ++   L  I  
Sbjct: 466 AVYVVELNENHVPSRFIEVNPVGCKRFGYSREELLSLPFPNVVPQDSKMIVR-LLKRIRE 524

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578
                TL+   +  T +       + +  L     +     DI+E  + +  L  ++K+A
Sbjct: 525 GQTSFTLQDEYVFPTGKIITTEFSVRVFNLNGKKVFLSISRDITERLKTEELLRKSEKLA 584

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
                        ++HEI  PLTA+ GF +++K+             Y N +      + 
Sbjct: 585 VV-----GQLATAMAHEINNPLTAMKGFMQLLKSTE-----TENNRGYINIVSSEIERIE 634

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
            I N+ + ++K +  K+  +     +   + + ++L+Q  A    I IR  F  +IP I 
Sbjct: 635 SITNEFMAVAKPQVVKIQPN----DIGVLMDQVLTLLQPQAMMNNIQIRIDFTPDIPLIP 690

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
            +   +KQ+ +NIL NAI   P+GG+I+I      + ++ +R  D G G+    +    +
Sbjct: 691 CEGNQLKQVFVNILKNAIESMPTGGEILIQFDKLDHNQIRIRFIDQGCGIPKERIPYLGE 750

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           PF        I+ EG GLGL +   +++ + GK +I S   KGT++E+  P+
Sbjct: 751 PFY------SIKEEGIGLGLMVCYKIIETHQGKVFIESDVNKGTIVEVTLPI 796



 Score =  107 bits (268), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 41/280 (14%), Positives = 87/280 (31%), Gaps = 20/280 (7%)

Query: 313 AYFDEGENLTPETVDKCPIPFF----VYSHGNLFYANPSFLLLTKYKSVDDIEI-AGGLS 367
               + +    +TV +     F    V  H      +  F     + S   +      + 
Sbjct: 186 RELKKSKQELTDTVHELQGGIFKFKKVGKHFIHTLCDGQFYYQKGFYSEQVVGKSLRTID 245

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
             +  P L          L   +            + W  + ++ +         +  + 
Sbjct: 246 ASIVPPHLVPQLMKY--YLQAWEGKENIFE-----LPWPDDKTIILI--ALRPIKRNGQV 296

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
           M   G   +  + +  + ++      L S ++   D I I +REG IL  N+A  K+FG+
Sbjct: 297 MEVVGSIVDITERKKVESELRATKELLESFIKHNVDAITISDREGHILQANKAYEKIFGW 356

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
            +++I+ K     +           + +IL           T+    +  LL + + +  
Sbjct: 357 SLQEIIGKRL-PCVPDFLMEESLGNIQKIL-TKESVVTRLETVRRRNDGSLLDVSLTVSP 414

Query: 548 LPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESS 583
           +               DISE KQ + +     +  +    
Sbjct: 415 ILDVRGNVLALSAICRDISERKQAERERHRLHQQLKDSEM 454



 Score = 62.7 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/287 (13%), Positives = 82/287 (28%), Gaps = 25/287 (8%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG-KTT 148
           D  G++ + ++   K  G    ++IG RL  V D L  +   +I  +L +++     +T 
Sbjct: 338 DREGHILQANKAYEKIFGWSLQEIIGKRLPCVPDFLMEESLGNIQKILTKESVVTRLETV 397

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +G+ L V + ++  PI              I               RL ++     
Sbjct: 398 RRRNDGSLLDVSLTVS--PILDVRGNVLALS--AICRDISERKQAERERHRLHQQLKDSE 453

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLR--------------MKNKVSSLT-EYYAHKDDV 253
              +       +   +          R               + ++ SL       +D  
Sbjct: 454 MKYRALIEQATDAVYVVELNENHVPSRFIEVNPVGCKRFGYSREELLSLPFPNVVPQDSK 513

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
           +       +   ++S   Q+++        T +               +LS     +   
Sbjct: 514 MIVRLLKRIREGQTSFTLQDEYVFPTGKIITTEFSVRVFN--LNGKKVFLSISRDITERL 571

Query: 314 YFDEGENLTP--ETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVD 358
             +E    +     V +       +   N   A   F+ L K    +
Sbjct: 572 KTEELLRKSEKLAVVGQLATA-MAHEINNPLTAMKGFMQLLKSTETE 617


>gi|227879007|ref|ZP_03996903.1| histidine kinase [Lactobacillus crispatus JV-V01]
 gi|256844226|ref|ZP_05549712.1| two-component system response regulator [Lactobacillus crispatus
           125-2-CHN]
 gi|256849374|ref|ZP_05554807.1| two-component system response regulatory system histidine kinase
           [Lactobacillus crispatus MV-1A-US]
 gi|262047879|ref|ZP_06020827.1| two-component system response regulator [Lactobacillus crispatus
           MV-3A-US]
 gi|293380063|ref|ZP_06626159.1| hypothetical protein HMPREF0891_0157 [Lactobacillus crispatus
           214-1]
 gi|295691936|ref|YP_003600546.1| sensor protein [Lactobacillus crispatus ST1]
 gi|227861396|gb|EEJ69019.1| histidine kinase [Lactobacillus crispatus JV-V01]
 gi|256613304|gb|EEU18507.1| two-component system response regulator [Lactobacillus crispatus
           125-2-CHN]
 gi|256714150|gb|EEU29138.1| two-component system response regulatory system histidine kinase
           [Lactobacillus crispatus MV-1A-US]
 gi|260571823|gb|EEX28396.1| two-component system response regulator [Lactobacillus crispatus
           MV-3A-US]
 gi|290923377|gb|EFE00284.1| hypothetical protein HMPREF0891_0157 [Lactobacillus crispatus
           214-1]
 gi|295030042|emb|CBL49521.1| Sensor protein [Lactobacillus crispatus ST1]
          Length = 617

 Score =  317 bits (813), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 86/395 (21%), Positives = 170/395 (43%), Gaps = 32/395 (8%)

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
           ++  +           ++    +   + E  +L S+L   SDG+   +R G +   N   
Sbjct: 235 DELGQLAKAFNTLSVRIERSQEES--DSERRRLDSVLSHMSDGVLATDRHGNVSVVNHMA 292

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
                   ++++ KP    L     S       +++S      +        +     S 
Sbjct: 293 LNFLNKKEDEVINKPIAEVLGLEDTSS-----QDLISSQKEIVITLDPGTRDEIILHASF 347

Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
            +I +   F S     +HD++E ++ ++               +  F++ VSHE+RTPLT
Sbjct: 348 SLIKRVTGFVSGSVCVLHDVTEQQKNED--------------SQRQFVSNVSHELRTPLT 393

Query: 602 AIIGFSEVIKNQRFGPLGNPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
           ++  + E +     G   NP    ++     +  + ++ ++NDLL +S+++ G   +  E
Sbjct: 394 SLQAYIEALNE---GAWKNPEIAPKFLEVTQQETSRMIRMINDLLSLSRMDRGVSKMDLE 450

Query: 661 PVSLDEAVSEAISLVQLYANEKRI------LIRTSFANNIPRILADLRSVKQIALNILSN 714
            V+L++ V+  ++   +     +        I+    +    +  D   + Q+  NI++N
Sbjct: 451 FVNLNDFVNHILNRFDMIVKTDKNKEKKKYTIKRELGSQALWVEIDTDKMMQVIDNIMNN 510

Query: 715 AIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           AI ++P GG I +  T   N  VIL + D G+G+   +L K    F ++  ++     GT
Sbjct: 511 AIKYSPDGGVITVRMTQNQN-HVILSISDQGLGIPRKDLGKIFDRFYRVDKARSRAQGGT 569

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GLGL +AK +V+A+ GK +  S+  KG+   I  P
Sbjct: 570 GLGLAIAKEIVEAHHGKIWADSSEGKGSTFYISLP 604


>gi|160935826|ref|ZP_02083201.1| hypothetical protein CLOBOL_00717 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441570|gb|EDP19280.1| hypothetical protein CLOBOL_00717 [Clostridium bolteae ATCC
           BAA-613]
          Length = 928

 Score =  317 bits (813), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 112/618 (18%), Positives = 240/618 (38%), Gaps = 68/618 (11%)

Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTIN--LNQYTKKQYFGTLQNNSKESF 300
           L +YYA   DV    +  L  + E+   + E    +      Y+ K  +GT++ +S    
Sbjct: 67  LRQYYAAMPDVFSCIRQELTQAVENERQDIELTVRLPLKEGGYSWKHLYGTVREDSLAGG 126

Query: 301 EYLSH---------RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN--LFYANPSFL 349
           + L                L   + +        +D      ++       L Y N    
Sbjct: 127 KVLQAELAGVDALAAGKEELERLYRQKLQYFHFMLDTYEGNAYISDMDTYELLYVNQHSC 186

Query: 350 LLTKYKSV--------DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401
            +    +V        + I+            K+++N   +                R+ 
Sbjct: 187 EVLGMPAVKAAGRKCYEVIQGRTSPCPFCTNSKITENEFYEWEFQNPVLERTFRIKNRI- 245

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
            I W    +                                 + K+  +  +  +++ + 
Sbjct: 246 -IDWEGHRARLELSHDMYS----------------------TEYKLAKKDQERDALVRSV 282

Query: 462 SDGIAIIN-REGI-ILSTNRAVSKLFGYPVEDILRKPFTVF--LEQNTPSVMNHYLTEIL 517
             G+A ++ R+   +L  + +   L GY  E+  ++  +    +  +    +   + +  
Sbjct: 283 PGGLARVDGRDMRTVLWYSGSFLDLIGYTKEEFEQEMHSQCSYVHPDDKERVAAVMLQSR 342

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDIS----EWKQEKN 569
                  +E        + K+L +         +      Y     D++    E  +++ 
Sbjct: 343 ETGRPTMVESRIFTQDGKVKILLMTCSYVSGEENWDGIPSYYTVGIDVTAERTEQARQRQ 402

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
            L  A + A+  +  K++FL+ +SH+IRTP+ AIIG + + +     P    +  +  N 
Sbjct: 403 ALEDACQAAQIANDAKTNFLSSMSHDIRTPMNAIIGMAVIAQANLQSP---EKIQDCLNK 459

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I+ S   +L+++N++LD+S+IESGK++L  E VSL E + + + + +  A EK + ++ +
Sbjct: 460 INVSSRHLLNLINEVLDMSRIESGKIDLISENVSLPELIEDVMDVFRPLAAEKHLELQIN 519

Query: 690 FAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT-----HTSNEEVILRVRD 743
             +    +++ D   ++Q+ +N+LSNAI +TP GG + +             +    V D
Sbjct: 520 ADHVRHEKVVTDQNRLQQVLVNLLSNAIKYTPEGGSVGLRVREIPAFAKGKGQYEFIVTD 579

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
            G+GM+   +    +PF +   S+  + +GTGLG+ + + +V    G   + S   +G+ 
Sbjct: 580 NGIGMSGDFIPHIFEPFSRTEESKTNQIQGTGLGMAITQNIVSMMNGTIEVKSVLGEGSQ 639

Query: 804 IE--IIFPLYDTSHPHDC 819
               + F L + +  ++ 
Sbjct: 640 FIVAVSFKLCEEAEDNNA 657



 Score = 38.1 bits (87), Expect = 7.2,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 48/145 (33%), Gaps = 14/145 (9%)

Query: 456 SILEATSDGIA--IINREGIILSTNRAVSKLFGYPVEDILR--KPFTVFLE--QNTPSVM 509
           ++LEA   GI   +++ +   L  N +     GY  E           +     +  S +
Sbjct: 22  AVLEALRTGIICCLLDEDLTFLWGNSSFFSGIGYTAERFGGLFSTLRQYYAAMPDVFSCI 81

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLS--LRIIIKKLPFSSCYSLTMHDISEWKQE 567
              LT+ +  + RQ +E       KE       L   +++   +    L           
Sbjct: 82  RQELTQAVENE-RQDIELTVRLPLKEGGYSWKHLYGTVREDSLAGGKVLQAE-----LAG 135

Query: 568 KNKLSHAKKIAEKESSHKSDFLARV 592
            + L+  K+  E+    K  +   +
Sbjct: 136 VDALAAGKEELERLYRQKLQYFHFM 160


>gi|321225247|gb|EFX50306.1| Aerobic respiration control sensor protein arcB [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           TN061786]
          Length = 608

 Score =  317 bits (813), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 84/435 (19%), Positives = 177/435 (40%), Gaps = 17/435 (3%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L +          +L  +Q     +     I   +  +         ++ E
Sbjct: 81  EESRQRLSRLVQKLEEMRERDLKL-NVQLKDNIAQLNQEIADREKAEAELQETFEQLKVE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             +    + ++E +   L S L+A+ D +   N +      NRA+  L G   + ++   
Sbjct: 140 IKEREEAQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCY 554
                       +     ++   ++  T E+        +    +R +    ++      
Sbjct: 200 PEDVYSPEAAEKVIETDEKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGL 259

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+        +   E+ S  K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 260 MGFGRDITERKR-------YQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTD 312

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     +Y   I  S   + +I ND++D+ K+E  K+ L  +P+     +++  +L
Sbjct: 313 LTA----EQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPIDFTSFMADLENL 368

Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
             L A +K +         +P  ++ D   ++QI  N++SNA+ FT  G Q+ +   +  
Sbjct: 369 SGLQAQQKGLRFVLEPTLPLPHKVITDGTRLRQILWNLISNAVKFTQQG-QVTVRARYDE 427

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMGKF 792
            + +   V D+G+G+   E +K    + Q+ +S   +   GTG+GL +++ +     G  
Sbjct: 428 GDMLHFEVEDSGIGIPQDEQDKIFAMYYQVKDSNGGKPATGTGIGLAVSRRLAKNMGGDI 487

Query: 793 YIFSTPAKGTLIEII 807
            + S P KG+   + 
Sbjct: 488 TVSSLPGKGSTFTLT 502


>gi|262042771|ref|ZP_06015924.1| sensor histidine kinase/response regulator [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
 gi|259039838|gb|EEW40956.1| sensor histidine kinase/response regulator [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
          Length = 755

 Score =  317 bits (812), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 86/435 (19%), Positives = 178/435 (40%), Gaps = 16/435 (3%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L            +L  +Q     +     I   +  +         ++ E
Sbjct: 57  EESRQRLSRLVDKLEEMRERDLKL-NVQLKDNIAQLNQEIGEREKAEAERETTLEQLKIE 115

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             +    + ++E +   L S L+A+ D +   N +      NRA+  L G   + ++   
Sbjct: 116 MKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLIHLK 175

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCY 554
                 +     +     ++   ++  T E+        +    +R +    ++      
Sbjct: 176 PQDVYSEEAAEKVLETDEKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRRGL 235

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+        +   E+ S  K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 236 MGFGRDITERKR-------YQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE 288

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     +Y   I  S   + +I ND++D+ K+E  K+ L  +PV     +++  +L
Sbjct: 289 LTS----EQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENL 344

Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
             L A +K +      +  +P  ++ D   ++QI  N++SNA+ FTP GG + +   +  
Sbjct: 345 SGLQAQQKGLRFVLEPSLPLPHKVITDGTRLRQILWNLISNAVKFTPQGGGVNVRVRYDE 404

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMGKF 792
            + +   V D+G+G+   E +K    + Q+ +S   +   GTG+GL +++ +     G  
Sbjct: 405 GDILHFEVEDSGIGIPEAEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLARNMGGDI 464

Query: 793 YIFSTPAKGTLIEII 807
            + S P KG    + 
Sbjct: 465 SVTSQPGKGATFTLT 479



 Score = 43.9 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 15/161 (9%), Positives = 38/161 (23%), Gaps = 8/161 (4%)

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIE 361
           +  +         ++  +     +D  P   F  +        N +  LLT       I 
Sbjct: 114 IEMKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLI- 172

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                  L      S+  A K +           +      + +                
Sbjct: 173 ------HLKPQDVYSEEAAEKVLETDEKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYY 226

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
           ++  +     G   +  + +  +  +E       + +   S
Sbjct: 227 DRVGKRRGLMGFGRDITERKRYQDALERASRDKTTFISTIS 267


>gi|104773346|ref|YP_618326.1| two-component system, sensor histidine kinase [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC 11842]
 gi|103422427|emb|CAI96976.1| Two-component system, sensor histidine kinase [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC 11842]
          Length = 631

 Score =  317 bits (812), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 88/397 (22%), Positives = 173/397 (43%), Gaps = 36/397 (9%)

Query: 426 ENMPQNGIEPEDVDTRINK--RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           + + Q G     + T+I +   + E E  +L S+L   +DG+   +R G +   N+    
Sbjct: 245 DELGQLGAAFNTLSTKIERSNEQSESERRRLDSVLSHMTDGVIATDRHGNVSIMNQMAQD 304

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
                 ED ++KP +  L           ++       +  ++      T +E +L    
Sbjct: 305 FLDVKAEDAIKKPISQVLGLGEDYTSQDLISN------QSDMQVTVNAGTDDEMILHASF 358

Query: 544 IIKK--LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
            + K    F S     +HD++E  + +++              +  F++ VSHE+RTPLT
Sbjct: 359 TLIKRVTGFVSGAVCVLHDVTEQIKNEDE--------------QRQFVSNVSHELRTPLT 404

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           ++  + E +    +         ++ +   +    ++ +VNDLL +S+++ G   L  E 
Sbjct: 405 SVRAYIEALNEGAW--KDPEIAPQFLDVTQKETERMIRMVNDLLVLSRMDRGATKLEPEW 462

Query: 662 VSLDEAVSEAISLV---------QLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712
           V+  + VS  ++           +  ++ K  +I+    N    +  D   + ++  NI+
Sbjct: 463 VNFTDFVSHLLNRFDMIVEHDQGEAQSDTKEYVIKRDLGNQALWVEIDTDQMMRVIDNIM 522

Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           +NAI ++P GG I +  T   N +++L + D G+G+   +L K    F +   ++     
Sbjct: 523 NNAIKYSPDGGTITVRLTQNQN-QILLSISDQGLGIPRKDLGKIFDRFYRADKARSRAQG 581

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GTGLGL +AK +V A+ G+ +  S    G+   I  P
Sbjct: 582 GTGLGLAIAKEIVTAHGGRIWADSREGHGSTFYIALP 618


>gi|315646393|ref|ZP_07899511.1| multi-sensor signal transduction histidine kinase [Paenibacillus
           vortex V453]
 gi|315278036|gb|EFU41356.1| multi-sensor signal transduction histidine kinase [Paenibacillus
           vortex V453]
          Length = 477

 Score =  317 bits (812), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 84/371 (22%), Positives = 150/371 (40%), Gaps = 23/371 (6%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           R +  E   L S+L + SD +   +  G ++  N    ++                    
Sbjct: 120 RNLNHEKEHLSSVLRSMSDAVITFDHHGQVILVNPPGQEIMKTWKGLQWDDELQG--GGW 177

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564
              VM   L+E+    + +  ++      K+    +    +          + + DI+E 
Sbjct: 178 AADVMPKPLSELYYSTVNEGRDQSADLHVKQGIWSAHMAPLYADDMIRGAVVVLRDITEQ 237

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
              +                ++DF+A VSHEIRTPL+ + G+SE + +            
Sbjct: 238 VTLE--------------KMRTDFIANVSHEIRTPLSMMQGYSEALLDGM--AASPEESR 281

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           E    I      +  +V DLLD++++E+G   L    +   E          + A E+ I
Sbjct: 282 ELIQVIHEESLRMGRLVKDLLDLTRMEAGHAELSLRKMDAGELCERVYRKFAVRAKEREI 341

Query: 685 LIRTS-FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII---STTHTSNEEVILR 740
            ++ +    N+    AD   ++Q+  N+L NA   TPSG QI I     T   +E + ++
Sbjct: 342 DLQLNKLHPNLMLEAADEDKLEQVLTNLLDNAFRHTPSGKQIQITADRITLLDDEALQVK 401

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
           + D GVG+   +L    + F +   ++      GTG+GL + K +V A+ G     S   
Sbjct: 402 ICDQGVGIPPEDLPFVFERFYKADKARVRGETVGTGIGLAIVKNIVTAHHGTINATSEVG 461

Query: 800 KGTLIEIIFPL 810
           KGT+  +I P+
Sbjct: 462 KGTIFTMIIPI 472


>gi|229100783|ref|ZP_04231606.1| hypothetical protein bcere0020_59380 [Bacillus cereus Rock3-29]
 gi|229107179|ref|ZP_04237165.1| hypothetical protein bcere0019_57460 [Bacillus cereus Rock3-28]
 gi|228676272|gb|EEL31131.1| hypothetical protein bcere0019_57460 [Bacillus cereus Rock3-28]
 gi|228682633|gb|EEL36688.1| hypothetical protein bcere0020_59380 [Bacillus cereus Rock3-29]
          Length = 811

 Score =  317 bits (812), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 102/558 (18%), Positives = 220/558 (39%), Gaps = 45/558 (8%)

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
           LP   D  TI  +    K+    ++         +               +      ++ 
Sbjct: 282 LPWPNDEATILFSLRPVKREGTVVE----VVGSTVDITKRIHAENELKVTKERLESFINH 337

Query: 329 CPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
                 ++   G+L  AN ++  +  +   + +        L   P+   +  ++ +   
Sbjct: 338 NVDAITIFDLDGHLLQANKAYERIFGWSEKESVGKK-----LPCVPEFLIDQTLEYINHI 392

Query: 388 RSDRTCIAASARLHTIQ-WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
           ++         R  T++    +  + ++       +     +  +GI  +  + +  +RK
Sbjct: 393 KNTNMNDPILTRFETVRQRKDKTLIDVSLTISPILDFRGNVIALSGICRDISERKQAERK 452

Query: 447 MEIEVMQL-------CSILEATSDGIAII---NREG--IILSTNRAVSKLFGYPVEDILR 494
           +     QL        +++E  +D + ++   + E     +  N    K FGY  E++L 
Sbjct: 453 LHQLHQQLSDSEMKYRALIEQATDAVYVVELNDNELPTRFIEVNPVACKRFGYSREELLS 512

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554
             F   +  ++  ++   + +I       TL+   +    +   +   + +  L     +
Sbjct: 513 MSFPSNVPPDS-PMVQRIIEKIREGQTSFTLQDEFVFPRGKNLTIEFSVRVFNLNGKKVF 571

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E  + +  L  ++K+A             ++HEI+ PLTA+ GF +++++  
Sbjct: 572 LSISRDITERLKTEELLRKSEKLAVV-----GQLSTAIAHEIKNPLTAMKGFIQLLQS-- 624

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
              LGN     Y + +      +  I N+ + ++K E+    L  +   L+  + + + L
Sbjct: 625 ---LGNKDTEHYIDIVLSEIERIDSITNEFMTLAKPEA----LEIKTNDLNVLMKQVVML 677

Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-S 733
           ++  A    I I+T F ++   IL +   +KQ+ +NIL NAI  T  GG+I+I   +   
Sbjct: 678 LEPQATMNCIQIKTQFTSDTSFILCECNQLKQVFINILKNAIEATSMGGEILIQIQYAPD 737

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
             +V +R  D G G+    +    +PF        ++  G GLGL +   +++ + GK +
Sbjct: 738 QNQVNIRFTDYGCGIEQERIPYLGEPFY------SLKENGIGLGLMICYKIIEKHQGKIF 791

Query: 794 IFSTPAKGTLIEIIFPLY 811
           I S   KGT + I  P+ 
Sbjct: 792 IESEVGKGTTVNIDLPIS 809



 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/266 (10%), Positives = 71/266 (26%), Gaps = 27/266 (10%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRL---CDVSDILHIDPNNHIGDL-LKRQNTWYG 145
           D  G+L + ++   +  G    + +G +L    +      ++  NHI +  +        
Sbjct: 346 DLDGHLLQANKAYERIFGWSEKESVGKKLPCVPEFLIDQTLEYINHIKNTNMNDPILTRF 405

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +T     + T + V + ++  PI           G  I               +L ++ S
Sbjct: 406 ETVRQRKDKTLIDVSLTIS--PILDFRGNVIALSG--ICRDISERKQAERKLHQLHQQLS 461

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLR--------------MKNKVSSLT-EYYAHK 250
                 +       +   +          R               + ++ S++       
Sbjct: 462 DSEMKYRALIEQATDAVYVVELNDNELPTRFIEVNPVACKRFGYSREELLSMSFPSNVPP 521

Query: 251 DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310
           D  +       +   ++S   Q++F        T +               +LS     +
Sbjct: 522 DSPMVQRIIEKIREGQTSFTLQDEFVFPRGKNLTIEFSVRVFN--LNGKKVFLSISRDIT 579

Query: 311 LSAYFDEGENLTP--ETVDKCPIPFF 334
                +E    +     V +      
Sbjct: 580 ERLKTEELLRKSEKLAVVGQLSTAIA 605


>gi|306829563|ref|ZP_07462753.1| sensor histidine kinase VicK [Streptococcus mitis ATCC 6249]
 gi|304428649|gb|EFM31739.1| sensor histidine kinase VicK [Streptococcus mitis ATCC 6249]
          Length = 449

 Score =  317 bits (812), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 95/376 (25%), Positives = 171/376 (45%), Gaps = 33/376 (8%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           R+ +  +E E  +L SIL   +DG+   NR G I   N    K  G   ED+L K     
Sbjct: 83  RLTQENLEQESKRLHSILSYMTDGVLATNRRGQITMINDMAKKQLGVQKEDVLNKSILEL 142

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SL 556
           L+      +   +T+I  L +               + LSLR+    +   S +      
Sbjct: 143 LKIEDEYELRDLITQIPELTIDS--------QDVNGEYLSLRVRFALVRRESGFISGLVA 194

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            +HD +E ++E+ +                 F++ VSHE+RTPLT++  + E +     G
Sbjct: 195 VLHDTTEQEKEERERRL--------------FVSNVSHELRTPLTSVKSYLEAL---DEG 237

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV- 675
            L +P   ++        N ++ +V DLL +S+I++    L  E ++    ++  ++   
Sbjct: 238 ALYDPVAPDFIKVSLDETNRMMRMVTDLLHLSRIDNATTQLDVELINFTAFITFILNRFD 297

Query: 676 --QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
             +   +EK+  +   +  N   I  D   + Q+  NIL+NAI ++P GG+I +S   T 
Sbjct: 298 KMRSQDDEKKYELVRDYPINSVWIEIDTDKMTQVIDNILNNAIKYSPDGGKITVSMKTTD 357

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
           ++ + L ++D G+G+   +L K    F ++  ++     GTGLGL +AK ++  + G  +
Sbjct: 358 DQMI-LSIKDQGLGIPKQDLPKIFDRFYRVDRARSRAQGGTGLGLAIAKEIIKQHNGFIW 416

Query: 794 IFSTPAKGTLIEIIFP 809
             S   KG+   I+ P
Sbjct: 417 AKSEYGKGSTFTIVLP 432


>gi|182682436|ref|YP_001830596.1| PAS/PAC sensor signal transduction histidine kinase [Xylella
           fastidiosa M23]
 gi|182632546|gb|ACB93322.1| PAS/PAC sensor signal transduction histidine kinase [Xylella
           fastidiosa M23]
          Length = 558

 Score =  317 bits (812), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 98/521 (18%), Positives = 188/521 (36%), Gaps = 44/521 (8%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYS---------HGNLFYANPSFLLLTKYKSVDD 359
           P +    D   ++  E +      F +            G     N SF    +  SV  
Sbjct: 33  PLVLQSLDIPSDVYREMLCTLEAGFCIVQIVLDDGQPVDGIFRLTNASFGRHLRLDSV-- 90

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
                   ++           IK           +   AR    +W         +    
Sbjct: 91  -----VGESVCGIMPDDGPEYIKRYGGVALSGQRVHFEARALR-RW---------YSVEV 135

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
                PE      +  +  + +  +R++    ++   + +     + + + +G +   N 
Sbjct: 136 MRVGAPEGRLLGVLFVDITEHKRMERRLAESEVRFNILADGLPMPVWVFDAQGGMRFVNT 195

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
           A  + FG  +       +++ L      +    L+  L    +  L  +      + +  
Sbjct: 196 AYGEFFGVDLSSGTLPEWSMVLHPEDVLIFEFKLSAALKT--QSALRALVRARRYDGQWR 253

Query: 540 SLRIIIKKLPFSSCYSLTM----HDISEWKQEKNKLSH-------AKKIAEKESSHKSDF 588
            + +          + + +     D++E  + +            A+  AE  +  K +F
Sbjct: 254 WIEMSATPRYSPDGHFIGLTGSSQDVTERLEIELAREQLLKSERAARNEAENMARLKDEF 313

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
           L+ +SHE+RTPLT I+G+SE++  +      +P Y    + I  S  +   +++D+LD+S
Sbjct: 314 LSTLSHELRTPLTTILGWSELLLQRI--EEQHPCYKG-LSVIASSAKVQKRLISDMLDLS 370

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIA 708
            +  GKM L  E + L E + E I L +     K   +          +L D   ++QI 
Sbjct: 371 SMLLGKMQLEMEVLDLVEQIREVIGLYEQVVESKGQRLLLRAPEMPCLVLGDATRLRQIF 430

Query: 709 LNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
            N+LSNAI FTP+ G I +       +   + V D+G G+    L      F Q   +  
Sbjct: 431 ENLLSNAIKFTPTDGCIDVEID-ADGDSFRVSVTDSGDGIAAEFLPHLFSRFRQADGTTT 489

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIF 808
               G GLGL + +++V+ + G     S    KG +  +  
Sbjct: 490 RCHGGLGLGLAIVQSLVEMHGGYVGATSPGLGKGAMFTVSL 530



 Score = 65.0 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 26/170 (15%), Positives = 51/170 (30%), Gaps = 6/170 (3%)

Query: 68  LDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI 127
            +SE  F        +   W  DA G ++ ++    +  G             V     +
Sbjct: 164 AESEVRFNILADGLPMP-VWVFDAQGGMRFVNTAYGEFFGVDLSSGTLPEWSMVLHPEDV 222

Query: 128 DP-NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHV 186
                 +   LK Q+           +G   +  I+++A P YS +  F G  G      
Sbjct: 223 LIFEFKLSAALKTQSALRALVRARRYDG--QWRWIEMSATPRYSPDGHFIGLTG--SSQD 278

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM 236
                +     ++L K         +  + ++ E     S +   P   +
Sbjct: 279 VTERLEIELAREQLLKSERAARNEAENMARLKDEFLSTLSHELRTPLTTI 328



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/205 (9%), Positives = 53/205 (25%), Gaps = 15/205 (7%)

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL--SHRNHPSLSAYFDEGENLT 322
              +L  Q         +         +          L      H  +     E E   
Sbjct: 111 GGVALSGQRVHFEARALRRWYSVEVMRVGAPEGRLLGVLFVDITEHKRMERRLAESEVRF 170

Query: 323 PETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYK-SVDDIEIAGGLSTLLDAPKLSDNNA 380
               D  P+P +V+   G + + N ++        S   +     +          ++  
Sbjct: 171 NILADGLPMPVWVFDAQGGMRFVNTAYGEFFGVDLSSGTLPEWSMVLH-------PEDVL 223

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
           I    L  + +T  A  A +   +++      +      + +     +   G   +  + 
Sbjct: 224 IFEFKLSAALKTQSALRALVRARRYDG-QWRWIEMSATPRYSPDGHFIGLTGSSQDVTER 282

Query: 441 ---RINKRKMEIEVMQLCSILEATS 462
               + + ++        +  E  +
Sbjct: 283 LEIELAREQLLKSERAARNEAENMA 307


>gi|331266319|ref|YP_004325949.1| signal transduction histidine kinase [Streptococcus oralis Uo5]
 gi|326682991|emb|CBZ00608.1| signal transduction histidine kinase [Streptococcus oralis Uo5]
          Length = 449

 Score =  317 bits (812), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 95/376 (25%), Positives = 170/376 (45%), Gaps = 33/376 (8%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           R+ +  +E E  +L SIL   +DG+   NR G I   N    K  G   ED+L K     
Sbjct: 83  RLTQENLEQESKRLNSILSYMTDGVLATNRRGQITMINDMAKKQLGVQKEDVLNKSILEL 142

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SL 556
           L+      +   +T+I  L +               + LSLR+    +   S +      
Sbjct: 143 LKIEDEYELRDLITQIPELTIDS--------QDVNGEYLSLRVRFALVRRESGFISGLVA 194

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            +HD +E ++E+ +                 F++ VSHE+RTPLT++  + E +     G
Sbjct: 195 VLHDTTEQEKEERERRL--------------FVSNVSHELRTPLTSVKSYLEAL---DEG 237

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV- 675
            L +P   ++        N ++ +V DLL +S+I++    L  E ++    ++  ++   
Sbjct: 238 ALYDPVAPDFIKVSLDETNRMMRMVTDLLHLSRIDNTTSQLDVELINFTAFITFILNRFD 297

Query: 676 --QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
             +    EK+  +   +  N   I  D   + Q+  NIL+NAI ++P GG+I +S   T 
Sbjct: 298 KMRSQDEEKKYELVRDYPINSVWIEIDTDKMTQVIDNILNNAIKYSPDGGKITVSMKTTD 357

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
           ++ + L ++D G+G+   +L K    F ++  ++     GTGLGL +AK ++  + G  +
Sbjct: 358 DQMI-LSIKDQGLGIPKQDLPKIFDRFYRVDRARSRAQGGTGLGLAIAKEIIKQHNGFIW 416

Query: 794 IFSTPAKGTLIEIIFP 809
             S   KG+   I+ P
Sbjct: 417 AKSEYGKGSTFTIVLP 432


>gi|160896955|ref|YP_001562537.1| multi-sensor hybrid histidine kinase [Delftia acidovorans SPH-1]
 gi|160362539|gb|ABX34152.1| multi-sensor hybrid histidine kinase [Delftia acidovorans SPH-1]
          Length = 1303

 Score =  317 bits (812), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 124/762 (16%), Positives = 255/762 (33%), Gaps = 65/762 (8%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN-HIGDLLKRQNTWYGKTT 148
           D  G L + + +   ++G++   M+G+ + D+       P +     ++  Q    G   
Sbjct: 21  DEQGGLLDANAQACASLGHHKAAMLGLGIMDLWLDPDGRPRDFWRDMVVDSQALLRG--R 78

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR--------- 199
           L   +G++L   I +  L +  R   F+ +                              
Sbjct: 79  LIRRDGSSLPAEIHVHCLSLSGRRLFFTTWHDLSERTGQDEQIGQPNAQLEPHLQNRTWP 138

Query: 200 ---LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP--PHLRMKNKVSSLTEYYAHKDDVL 254
                +    +          +  +               R    +   T+     D   
Sbjct: 139 WQDSTRLLETVMRETPDLVFAKDRQGRYTFANPATARFAGRAPEDIVGKTDQELFSDSSF 198

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
                 +L S+   +   +D   ++  +   +      ++    +   L      +L   
Sbjct: 199 TDSDRRVLDSDAPVV--MDDHLLVDGQRRIFQSTKIPYRDAEGRTVGVLGIARDITLMRQ 256

Query: 315 FDEGENLTPETVDKCP----IPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
            +     + + + +      +  + +      F A+    ++              L  +
Sbjct: 257 TESQLQKSYDVLRQAEQLARLGSWTWELDTGHFQASEMMYVMNGLDPQGPPLTRHALRAM 316

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
           L    L+   A   + +       I         +       A   +     ++    + 
Sbjct: 317 LGPQDLARLTAAVDLCISTGQSYSIDV-----VQRCPDGRQFAARLMGRALRDEQGRIVA 371

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG----IILSTNRAVSKLF 485
            +G   +  +        E   M+L ++ +    G       G     +   +  +  L 
Sbjct: 372 LSGTLQDLSER-------EDARMRLEALADNLPSGAIYRLEGGLTQLRLSYISAGIENLI 424

Query: 486 GYPVEDIL--RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           G P   I+  R+ +   +      +    +   +            +    E + L  R 
Sbjct: 425 GVPAHAIMADRQVYLNAIHPEDLPLYQGMMQRSIDTLRVFDCRFRVIRPDGEIRWLRCRS 484

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
             ++      +   M DI+  ++ +  L  AK+ AE     KSDFLA +SHEIRTP+  +
Sbjct: 485 APRRCQEGMVWDGIMLDITREREAEQALQQAKEAAEAAERAKSDFLAIMSHEIRTPMNTV 544

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           IG + +++          R   Y   ++RS + +L ++ND+LD SKIE+G + L     +
Sbjct: 545 IGMTRLVQQTALTS----RQRGYLEKVERSASALLAVINDILDFSKIEAGMLVLEEVDFA 600

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSG 722
           LD+ +    +   L A EK + +  +    +P  +  D   + Q+  N++ NA+ FT  G
Sbjct: 601 LDDVLETVTASTALRAEEKGLEVVYALDPQLPPRLRGDPMRLGQVLTNLVGNAVKFTEHG 660

Query: 723 GQIIISTTHTSN-----------------EEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
            +++IS                         + + VRDTG+G+     E+  +PF Q   
Sbjct: 661 -EVVISLHLAPPPVDAPADADADTTAAPLHHLCVSVRDTGIGLDASRAERLFQPFTQADI 719

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
               R  GTGLGL +   +V    G+  + S P +G+     
Sbjct: 720 QTTRRHGGTGLGLAICHRLVQLMGGEIGVRSQPGQGSDFRFT 761



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/425 (10%), Positives = 99/425 (23%), Gaps = 33/425 (7%)

Query: 36  TEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYL 95
           +E++ ++        Q     QN+      +    E      P        +  D  G  
Sbjct: 112 SERTGQDEQIGQPNAQLEPHLQNRTWPWQDSTRLLETVMRETPD-----LVFAKDRQGRY 166

Query: 96  KEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGT 155
              +    +  G     ++G    ++        ++    +L              ++G 
Sbjct: 167 TFANPATARFAGRAPEDIVGKTDQELFSDSSFTDSDR--RVLDSDAPVVMDD-HLLVDG- 222

Query: 156 NLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHS 215
                     +P         G  G  I     +     +  ++         ++ +  S
Sbjct: 223 -QRRIFQSTKIPYRDAEGRTVGVLG--IARDITLMRQTESQLQKSYDVLRQAEQLARLGS 279

Query: 216 SVEKEKYDIFSQQS------PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
              +     F                      +L      +D    T    L  S   S 
Sbjct: 280 WTWELDTGHFQASEMMYVMNGLDPQGPPLTRHALRAMLGPQDLARLTAAVDLCISTGQSY 339

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
                    +  Q+  +     L++               S     ++         D  
Sbjct: 340 SIDVVQRCPDGRQFAARLMGRALRDEQGRIVALSGTLQDLSER---EDARMRLEALADNL 396

Query: 330 PIPFFVYSHG-----NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
           P        G      L Y +     L    +   +        +       ++  +   
Sbjct: 397 PSGAIYRLEGGLTQLRLSYISAGIENLIGVPAHAIMADR----QVYLNAIHPEDLPLYQG 452

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
           M+ RS  T      R   I+ + E    +      +  Q       +GI  +    R  +
Sbjct: 453 MMQRSIDTLRVFDCRFRVIRPDGE-IRWLRCRSAPRRCQEGMV--WDGIMLDITREREAE 509

Query: 445 RKMEI 449
           + ++ 
Sbjct: 510 QALQQ 514



 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/126 (11%), Positives = 35/126 (27%), Gaps = 2/126 (1%)

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
               L+   DG  + + +G +L  N       G+    +L                  + 
Sbjct: 6   YRQFLDRVPDGFLLFDEQGGLLDANAQACASLGHHKAAMLGLGIMDLWLDPDGRP-RDFW 64

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH 573
            +++         +  +          + +    L     +  T HD+SE   +  ++  
Sbjct: 65  RDMVVDSQALLRGR-LIRRDGSSLPAEIHVHCLSLSGRRLFFTTWHDLSERTGQDEQIGQ 123

Query: 574 AKKIAE 579
                E
Sbjct: 124 PNAQLE 129



 Score = 38.5 bits (88), Expect = 4.4,   Method: Composition-based stats.
 Identities = 53/508 (10%), Positives = 121/508 (23%), Gaps = 36/508 (7%)

Query: 94  YLKEISEELPKTIGNYAFKMIGMR---LCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150
            L  IS  +   IG  A  ++  R   L  +           +   +     +  +  + 
Sbjct: 412 RLSYISAGIENLIGVPAHAIMADRQVYLNAIHPEDLPLYQGMMQRSIDTLRVFDCRFRVI 471

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
             +G   ++    A        R   G    GI+     + +     ++  +        
Sbjct: 472 RPDGEIRWLRCRSA------PRRCQEGMVWDGIMLDITREREAEQALQQAKEAAEAAERA 525

Query: 211 KKGHSSVEKEKYD-----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
           K    ++   +       +           + ++     E        L      +L   
Sbjct: 526 KSDFLAIMSHEIRTPMNTVIGMTRLVQQTALTSRQRGYLEKVERSASALLAVINDILDFS 585

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
           +                   +    +    ++E    + +   P L            + 
Sbjct: 586 KIEAGMLVLEEVDFALDDVLETVTASTALRAEEKGLEVVYALDPQLPPRLRGDPMRLGQV 645

Query: 326 VDKC-PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
           +            HG +     S  L            A   +  L    +S  +    +
Sbjct: 646 LTNLVGNAVKFTEHGEVVI---SLHLAPPPVDAPADADADTTAAPLHHLCVSVRDTGIGL 702

Query: 385 MLYRSDRTCIAA-SARLHTIQWNRENSLAMTFIPFEKANQFPENM-----PQNGIEPEDV 438
              R++R       A + T + +    L +            E        Q        
Sbjct: 703 DASRAERLFQPFTQADIQTTRRHGGTGLGLAICHRLVQLMGGEIGVRSQPGQGSDFRFTA 762

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
             R+    +      L S       G+ I++          A+ +  G   +        
Sbjct: 763 KVRLATDALPDGHDNLGST------GVLIVDDNASAREALAAMVRKLGMRCDTAADGMQA 816

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM 558
           + + Q      + Y   +L   +            +E + L       K P +   +   
Sbjct: 817 LRMLQEAARQESPYGLALLDWRMPGMDGLELARRMRERQDL------VKTPAALMVTAFG 870

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKS 586
            D  + +  +  L          S+ +S
Sbjct: 871 RDEVQLRAAQFGLRGLLIKPLTASALRS 898


>gi|312977020|ref|ZP_07788769.1| sensory box histidine kinase VicK [Lactobacillus crispatus CTV-05]
 gi|310896348|gb|EFQ45413.1| sensory box histidine kinase VicK [Lactobacillus crispatus CTV-05]
          Length = 620

 Score =  317 bits (812), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 86/395 (21%), Positives = 170/395 (43%), Gaps = 32/395 (8%)

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
           ++  +           ++    +   + E  +L S+L   SDG+   +R G +   N   
Sbjct: 238 DELGQLAKAFNTLSVRIERSQEES--DSERRRLDSVLSHMSDGVLATDRHGNVSVVNHMA 295

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
                   ++++ KP    L     S       +++S      +        +     S 
Sbjct: 296 LNFLNKKEDEVINKPIAEVLGLEDTSS-----QDLISSQKEIVITLDPGTRDEIILHASF 350

Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
            +I +   F S     +HD++E ++ ++               +  F++ VSHE+RTPLT
Sbjct: 351 SLIKRVTGFVSGSVCVLHDVTEQQKNED--------------SQRQFVSNVSHELRTPLT 396

Query: 602 AIIGFSEVIKNQRFGPLGNPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
           ++  + E +     G   NP    ++     +  + ++ ++NDLL +S+++ G   +  E
Sbjct: 397 SLQAYIEALNE---GAWKNPEIAPKFLEVTQQETSRMIRMINDLLSLSRMDRGVSKMDLE 453

Query: 661 PVSLDEAVSEAISLVQLYANEKRI------LIRTSFANNIPRILADLRSVKQIALNILSN 714
            V+L++ V+  ++   +     +        I+    +    +  D   + Q+  NI++N
Sbjct: 454 FVNLNDFVNHILNRFDMIVKTDKNKEKKKYTIKRELGSQALWVEIDTDKMMQVIDNIMNN 513

Query: 715 AIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           AI ++P GG I +  T   N  VIL + D G+G+   +L K    F ++  ++     GT
Sbjct: 514 AIKYSPDGGVITVRMTQNQN-HVILSISDQGLGIPRKDLGKIFDRFYRVDKARSRAQGGT 572

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GLGL +AK +V+A+ GK +  S+  KG+   I  P
Sbjct: 573 GLGLAIAKEIVEAHHGKIWADSSEGKGSTFYISLP 607


>gi|254415487|ref|ZP_05029247.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196177668|gb|EDX72672.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 512

 Score =  317 bits (812), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 87/509 (17%), Positives = 176/509 (34%), Gaps = 36/509 (7%)

Query: 324 ETVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
             +D+ P+   +     +  + N      T       +     +S               
Sbjct: 12  GVLDQMPLGVCILRSDFIVLFWNRCLEDWTHLSRGQVLGHK--ISDYFADLNHPRYEKRL 69

Query: 383 PVMLYRSDRTCIAASARLHTIQ--WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD- 439
             +      T  +A    H I                        ++        +  + 
Sbjct: 70  KSIFSGGPPTIFSAQLHPHFIPAYLPDGQRRIQRTTVTAIPGLTEKDYYALLSIQDVTEL 129

Query: 440 --------------------TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
                                +  +  +  +  QL ++ +A    ++ +N +   L  NR
Sbjct: 130 SQQVQDYRKMRDRALAEVQERQRAEAALRSQEEQLQAVFDAVPGFVSWVNSDLRYLGVNR 189

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
            ++  F       + +           +               Q +E         +   
Sbjct: 190 HLADTFNLTPNHFIGQDVGFMKASPGFADFMRQFIASPEPAASQVIEAYV-----NDTTR 244

Query: 540 SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
           S  I+ +K            DI++ KQ + ++  A    ++ S  KS F+   SHE RTP
Sbjct: 245 SYLIVAQKYQQGRAAVSVGIDITDRKQAEEEVRKALAKEKELSELKSRFVTMTSHEFRTP 304

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           LT I+  +E +           + + + + I  +   ++ ++ D+  I K E+GK+ L  
Sbjct: 305 LTTILSSAE-LLEHYGHKWTPDKKLTHIHRIQGTVKHLVQVLEDVTLIGKAEAGKLQLQP 363

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719
             + L E     I  +QL   +   L+ T    N+  +  D + ++ I  N++SNAI ++
Sbjct: 364 VSLDLVEFCHGLIEELQLSLGQHHSLVFTHQCPNL-NVCMDEKLLRHILTNLISNAIKYS 422

Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
           P+ G + ++     +   I +++D G+G+   + EK  + F +  N       GTGLGL 
Sbjct: 423 PNCGIVTLNLVCQDS-SAIFQIKDQGIGIPLADQEKLFEAFHRAQNVGN--ISGTGLGLA 479

Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           + K  VD   G+  + S   +GT+  +  
Sbjct: 480 IVKRAVDLQGGEITVNSQVGEGTMFTVTL 508


>gi|218528519|ref|YP_002419335.1| multi-sensor hybrid histidine kinase [Methylobacterium
            chloromethanicum CM4]
 gi|218520822|gb|ACK81407.1| multi-sensor hybrid histidine kinase [Methylobacterium
            chloromethanicum CM4]
          Length = 1225

 Score =  317 bits (812), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 117/798 (14%), Positives = 237/798 (29%), Gaps = 100/798 (12%)

Query: 86   TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWY 144
             W+    GY    +E      G  A    G     +      +         L     + 
Sbjct: 320  IWSTRPDGYHDFYNERWYAYTGVPAGTTDGEAWNGMFHPDDRERAWAAWQHALATGENYQ 379

Query: 145  GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
             +  L    G  LY  +   A P+          R FG                 L    
Sbjct: 380  IEYRLRHRSG--LYRWVLGRAQPVRDPEGRIV--RWFGTCTDIHDRKLAEERQAFLLGLN 435

Query: 205  SHLHEI---------------------KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL 243
              L E                      + G+  +++    +  ++       + +   + 
Sbjct: 436  DRLREADEPQAVTLAAAATLGAHIGVARAGYGEIDETGEIVRVERDWTRDPSVPSLAGAS 495

Query: 244  TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYT---KKQYFGTLQNNSKESF 300
                     V+   +  L    E    +    H       +   +      L    +   
Sbjct: 496  RILDGFGPAVIAELRAGLTLVVEDCYADPRAGHDYAATWDSIGCRSLVVVPLIREGRLRA 555

Query: 301  EYLSHRNHPSLSAYFDEG-------------------------ENLTPETVDKCPIPFFV 335
                H   P +    + G                                 D  P+   +
Sbjct: 556  ILYLHEPKPRVWRAEEIGLVEDVAQRVGHAAERARAEQAERANARELRLIADSLPVLIAL 615

Query: 336  YSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394
            +    +  +AN +          + +     L+ L+     ++            D    
Sbjct: 616  FDADGVCRFANAASADWFGVAPAESVGQT--LAALIGPADFAEARPRFESARAGRD---- 669

Query: 395  AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV--- 451
               A     + +    +A       +               +  D +  +  +E EV   
Sbjct: 670  -VRAERAWPRRDGSPRIA-DIRYLPRPMPDGSTDGAYLFVTDISDAKRIEAMLEREVGER 727

Query: 452  -MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
              +   + + T+D +     +G + S N A  +L G+  +++L +PF  F++    +   
Sbjct: 728  TRERDRLWQTTNDLMGTAGLDGHLRSVNPAWGRLLGWSEQELLERPFLDFIDPEDHAGTG 787

Query: 511  HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570
              L  +      Q  + +    +K+ +  ++         S C+ +   DI++ +  + +
Sbjct: 788  AVLARLA--GSDQITDFVDRILSKDGRRRTVMWTAVP--ESGCFHIVGRDITDQRLAEEQ 843

Query: 571  LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
            L  A+K+              ++H+    LT IIG  + +   R           YA   
Sbjct: 844  LRQAQKM-----EAVGQLTGGIAHDFNNLLTGIIGSLD-LMQTRIAQGRIDTLERYAGAA 897

Query: 631  DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
              S +    + + LL  ++    +  L  +PV ++  ++    +++  A  +++ +    
Sbjct: 898  LTSAHRAASLTHRLLAFAR----RQPLEQKPVDVNVLLAGMEEMLR-RALPEQVHLDIVA 952

Query: 691  ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT--------------HTSNEE 736
               +   L D   ++   LN+  NA    P GG++++ T+                    
Sbjct: 953  TEGLWPTLCDPHQLENAVLNLAINARDAMPEGGRLVVETSNAHLGPADLRLHSGAREGAY 1012

Query: 737  VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
            V +RV DTG GM      +A +PF          G GTGLGL +       + G   I S
Sbjct: 1013 VCIRVTDTGHGMPPEVAARAFEPFFTTKPL----GMGTGLGLSMIYGFARQSEGHARIVS 1068

Query: 797  TPAKGTLIEIIFPLYDTS 814
             P +GT + I  P Y  +
Sbjct: 1069 EPGRGTTVTICLPRYRGA 1086



 Score =  116 bits (290), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 43/555 (7%), Positives = 129/555 (23%), Gaps = 62/555 (11%)

Query: 86  TWNID-AHGYLKEISEELPKTIGNYAF----KMIGMRLCDVSDILHIDP-NNHIGDLLKR 139
            W+ D A   +           G                       +      IG +   
Sbjct: 190 IWDWDVAADRVT-ADPRFAALYGVDPEMAAAGAPIAAFFSGVHPDDLPSLKASIGAVFGT 248

Query: 140 QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199
              +  +     ++G      +          +     F G  +              + 
Sbjct: 249 GGQFDAE--YRLVQGDGTIRWVAAQGRCTLGEDGTPRHFPG--VSFDITERKRIEQALRD 304

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP-----PHLRMKNKVSSLTEYYAHKDDVL 254
              +F  +           +                       +  +    ++    +  
Sbjct: 305 SQDRFRGIINSVDQMIWSTRPDGYHDFYNERWYAYTGVPAGTTDGEAWNGMFHPDDRERA 364

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
                  L + E+    +      +            +++       +            
Sbjct: 365 WAAWQHALATGEN-YQIEYRLRHRSGLYRWVLGRAQPVRDPEGRIVRWFGTCTDIHDRKL 423

Query: 315 FDEGENLTPETVDKCP-------------------IPFFVYSHGNLFYANPSFLLLTKYK 355
            +E +       D+                     I      +G +        +   + 
Sbjct: 424 AEERQAFLLGLNDRLREADEPQAVTLAAAATLGAHIGVARAGYGEIDETGEIVRVERDWT 483

Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKP-VMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
               +    G S +LD    +    ++  + L   D      +   +   W+     ++ 
Sbjct: 484 RDPSVPSLAGASRILDGFGPAVIAELRAGLTLVVEDCYADPRAGHDYAATWDSIGCRSLV 543

Query: 415 FIPFEKANQFPENMP------------QNGIEPEDVDT-------RINKRKMEIEVMQLC 455
            +P  +  +    +             + G+  +              ++       +L 
Sbjct: 544 VVPLIREGRLRAILYLHEPKPRVWRAEEIGLVEDVAQRVGHAAERARAEQAERANARELR 603

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
            I ++    IA+ + +G+    N A +  FG    + + +     +     +        
Sbjct: 604 LIADSLPVLIALFDADGVCRFANAASADWFGVAPAESVGQTLAALIGPADFAEARPRFES 663

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSH 573
             +    +  E+         ++  +R + + +P        L + DIS+ K+ +  L  
Sbjct: 664 ARAGRDVRA-ERAWPRRDGSPRIADIRYLPRPMPDGSTDGAYLFVTDISDAKRIEAML-- 720

Query: 574 AKKIAEKESSHKSDF 588
            ++   + +  +   
Sbjct: 721 -EREVGERTRERDRL 734



 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/422 (8%), Positives = 102/422 (24%), Gaps = 27/422 (6%)

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ---------SPPPHLR 235
                          L+     L        +     +  +  +          P    R
Sbjct: 25  REILAYPWSDTPLGPLEDWPVSLRTTLATMLACPAAMFLAWGPEGISFFNDAYRPVFGDR 84

Query: 236 MKNKVSS----LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291
           +   + +    +          L        +  + +LP   D + +          +  
Sbjct: 85  LPRALGARFREIWADLWEDIGPLVDAALRGESVAQRNLPLLMDRYGVPEE-SWWSFTYSP 143

Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC-----PIPFFVYS--HGNLFYA 344
           +++++      +      +     +     + E ++        I  + +      +  A
Sbjct: 144 VRDDAGRINGMICVTAETTAEVLAERARRRSDERLEMALSAGGSIGIWDWDVAADRVT-A 202

Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
           +P F  L       ++  AG       +    D+       +     T     A    +Q
Sbjct: 203 DPRFAALYGVDP--EMAAAGAPIAAFFSGVHPDDLPSLKASIGAVFGTGGQFDAEYRLVQ 260

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
            +      +         +        G+  +  + +  ++ +     +   I+ +    
Sbjct: 261 GDG-TIRWVAAQGRCTLGEDGTPRHFPGVSFDITERKRIEQALRDSQDRFRGIINSVDQM 319

Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
           I     +G     N       G P      + +      +            L+      
Sbjct: 320 IWSTRPDGYHDFYNERWYAYTGVPAGTTDGEAWNGMFHPDDRERAWAAWQHALATGENYQ 379

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKES 582
           +E      +   + +  R    + P      +  T  DI + K  + + +    + ++  
Sbjct: 380 IEYRLRHRSGLYRWVLGRAQPVRDPEGRIVRWFGTCTDIHDRKLAEERQAFLLGLNDRLR 439

Query: 583 SH 584
             
Sbjct: 440 EA 441



 Score = 88.5 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 25/373 (6%), Positives = 76/373 (20%), Gaps = 27/373 (7%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN-TWYGKTT 148
              G +   ++      G+   + +G R  ++   L  D    +   L+ ++        
Sbjct: 66  GPEG-ISFFNDAYRPVFGDRLPRALGARFREIWADLWEDIGPLVDAALRGESVAQRNLPL 124

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           L    G            P+       +G     +      +       +R D++     
Sbjct: 125 LMDRYGVPEESWWSFTYSPVRDDAGRINGM--ICVTAETTAEVLAERARRRSDERLEMAL 182

Query: 209 EI----------KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
                                 ++       P          +  +  +      LK   
Sbjct: 183 SAGGSIGIWDWDVAADRVTADPRFAALYGVDPEMAAAGAPIAAFFSGVHPDDLPSLKASI 242

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS----HRNHPSLSAY 314
             +  +       +      +                      +            +   
Sbjct: 243 GAVFGTGG-QFDAEYRLVQGDGTIRWVAAQGRCTLGEDGTPRHFPGVSFDITERKRIEQA 301

Query: 315 FDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
             + ++     ++      +     G   + N  +   T   +      A   + +    
Sbjct: 302 LRDSQDRFRGIINSVDQMIWSTRPDGYHDFYNERWYAYTGVPAGTTDGEA--WNGMFHPD 359

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
                 A        +         RL   +        +        +     +   G 
Sbjct: 360 D--RERAWAAWQHALATGENYQIEYRL---RHRSGLYRWVLGRAQPVRDPEGRIVRWFGT 414

Query: 434 EPEDVDTRINKRK 446
             +  D ++ + +
Sbjct: 415 CTDIHDRKLAEER 427


>gi|253572318|ref|ZP_04849721.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
 gi|251838093|gb|EES66181.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
          Length = 785

 Score =  317 bits (812), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 98/515 (19%), Positives = 196/515 (38%), Gaps = 28/515 (5%)

Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDI 360
            L      +      +   +    +DK       V S G L YAN  F+           
Sbjct: 146 VLIMCRDITERVATQQQLEIFKSVLDKVSDSILAVSSDGTLVYANKQFMEEYGVT----- 200

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLY--RSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
               G   + D P       +    L   R +    +  A        +     ++    
Sbjct: 201 -QQMGTQKIYDLPVSMRTPELWEAKLKDIRDNGGSFSYRAAYVRKGEEKNRVHQVSTYLT 259

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR--EGIILS 476
           ++ +             +  D    + ++    + L  IL      + + +   +   L 
Sbjct: 260 QEDDTE----LIWFFTQDITDVIKKRDELRELNLLLDGILNNVPVYLYVKDPEDDFRYLY 315

Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQN-TPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
            N+A ++    P    + +       +            E++    R  +++  + +T E
Sbjct: 316 WNKAFAEHSKIPASRAIGRTDFEIFPERADAERFRRDDLELIRTHERIDMQETYVAATGE 375

Query: 536 EKLLSLRIIIKKLPFSSCY-SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
            +++     +  +            DI+ ++  + +L  A+  AE+    K+ FLA +SH
Sbjct: 376 TRIVQTLKALVPMEGREPLLIGISWDITNFQNIEQELIKARIKAEQSDRLKTAFLANMSH 435

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           EIRTPL AI+GFS ++               Y++ I+++  ++L ++ND+LD+SKIE+G 
Sbjct: 436 EIRTPLNAIVGFSNLL----PSAETLEEEKLYSSIINQNSEILLQLINDILDLSKIEAGT 491

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714
           +    +P++L E       + +    E  + +     ++   I  D   + Q+  N L+N
Sbjct: 492 LEYVRQPMNLGEVCRNIYQIHKDRVQE-GVTLILDNEDDDLIIEEDRNRIAQVITNFLTN 550

Query: 715 AIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           A  FT SG +I        N+ +   V+DTG+G+   ++      F ++ +      +GT
Sbjct: 551 AGKFTLSG-EIRFGFKV-DNQCIRFYVKDTGIGIAPDKVGHIFDRFVKLNSF----AQGT 604

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GLGL + + +++   G+    S   KG+      P
Sbjct: 605 GLGLAICRMIIEKIGGEIGATSEVGKGSTFFFTIP 639



 Score = 48.5 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/127 (12%), Positives = 37/127 (29%), Gaps = 5/127 (3%)

Query: 457 ILEATSDGIAIINREGI-ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           IL +  D + + N   + I   +   +   G   +D         +       ++  + +
Sbjct: 52  ILNSLPDMLTVFNHNEVGIEVVSNEETNHVGISNKDFEGMHMRQMVPPEAYQNIHANMQK 111

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575
           +++                          I  L       +   DI+E    + +L   K
Sbjct: 112 VIATRTVSVAHHDM---DFNGSHHYYENRIFPL-DEEYVLIMCRDITERVATQQQLEIFK 167

Query: 576 KIAEKES 582
            + +K S
Sbjct: 168 SVLDKVS 174


>gi|33592925|ref|NP_880569.1| virulence sensor protein [Bordetella pertussis Tohama I]
 gi|34978356|sp|P16575|BVGS_BORPE RecName: Full=Virulence sensor protein BvgS; Flags: Precursor
 gi|33572573|emb|CAE42160.1| virulence sensor protein [Bordetella pertussis Tohama I]
          Length = 1238

 Score =  317 bits (812), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 114/587 (19%), Positives = 214/587 (36%), Gaps = 31/587 (5%)

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
               +        + ++ ES L     +    +   T++     +  +  +       RN
Sbjct: 363 LRSGEADMAGALFVNSARESFLSFSRPYVRNGMVIVTRQDPDAPVDADHLDGRTVALVRN 422

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLF-----------YANPSFLLLTKYKS 356
             ++             T D       + ++G              Y N  F    +  S
Sbjct: 423 SAAIPLLQRRYPQAKVVTADNPSEAMLMVANGQADAVVQTQISASYYVNRYFAGKLRIAS 482

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT-- 414
             D+  A          +    + +   +   S+    +  +R      +     A    
Sbjct: 483 ALDLPPAEIALAT-TRGQTELMSILNKALYSISNDELASIISRWRGSDGDPRTWYAYRNE 541

Query: 415 ---FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471
               I     +          +  +    +  +R +  ++  +  +++ T + I + ++E
Sbjct: 542 IYLLIGLGLLSALLFLSWIVYLRRQIRQRKRAERALNDQLEFMRVLIDGTPNPIYVRDKE 601

Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH----YLTEILSLDLRQTLEK 527
           G +L  N A    FG   + +L K          P++        LT + +    +  ++
Sbjct: 602 GRMLLCNDAYLDTFGVTADAVLGKTIPEANVVGDPALAREMHEFLLTRVAAEREPRFEDR 661

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
                 +   +    I                 DI+E  +   KL  AK+ A+  +  K+
Sbjct: 662 DVTLHGRTRHVYQWTIPYGDSLGELKGIIGGWIDITERAELLRKLHDAKESADAANRAKT 721

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
            FLA +SHEIRTP+ AIIG  E+       P       +       S   +L+++ D+LD
Sbjct: 722 TFLATMSHEIRTPMNAIIGMLELAL---LRPTDQEPDRQSIQVAYDSARSLLELIGDILD 778

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN-NIPRILADLRSVK 705
           I+KIE+GK +L     +L      AI +    A +K I +        +  +L D   +K
Sbjct: 779 IAKIEAGKFDLAPVRTALRVLPEGAIRVFDGLARQKGIELVLKTDIVGVDDVLIDPLRMK 838

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNE---EVILRVRDTGVGMTNYELEKAMKPFGQ 762
           Q+  N++ NAI FT  G Q++++ T   +     V   V DTG G++  +  +  KPF Q
Sbjct: 839 QVLSNLVGNAIKFTTEG-QVVLAVTARPDGDAAHVQFSVSDTGCGISEADQRQLFKPFSQ 897

Query: 763 IPNSQ-QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           +  S       GTGLGL +++ +V+   G   + S P  GT + +  
Sbjct: 898 VGGSAEAGPAPGTGLGLSISRRLVELMGGTLVMRSAPGVGTTVSVDL 944



 Score = 50.8 bits (120), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 25/234 (10%), Positives = 57/234 (24%), Gaps = 16/234 (6%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D  G +   ++    T G  A  ++G  + + + +        + + L  +     +   
Sbjct: 599 DKEGRMLLCNDAYLDTFGVTADAVLGKTIPEANVVGDPALAREMHEFLLTRVAAEREPRF 658

Query: 150 WPIE----GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
              +    G   +  +    +P      E  G  G  I        +         +   
Sbjct: 659 EDRDVTLHGRTRH--VYQWTIPYGDSLGELKGIIGGWI--DITERAELLRKLHDAKESAD 714

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
             +  K    +    +                 +++ L       D       Y    S 
Sbjct: 715 AANRAKTTFLATMSHEIRTPMNAIIGML-----ELALLRPTDQEPDRQSIQVAYDSARSL 769

Query: 266 ESSLPEQEDFHTINLN---QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
              + +  D   I          +     L   +   F+ L+ +    L    D
Sbjct: 770 LELIGDILDIAKIEAGKFDLAPVRTALRVLPEGAIRVFDGLARQKGIELVLKTD 823


>gi|45657401|ref|YP_001487.1| histidine kinase sensor protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|45600640|gb|AAS70124.1| histidine kinase sensor protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 731

 Score =  317 bits (812), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 123/568 (21%), Positives = 220/568 (38%), Gaps = 72/568 (12%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYSHG------NLFYANPSFLLLTKYKSVDDIEI 362
                 F+  + +    V++      V           + + NP+F  +T Y   D I  
Sbjct: 2   EPNRTNFEHSQEIYEILVNQISDSMLVTDTQLEPPGPKILFVNPAFCKMTGYTKEDLIGK 61

Query: 363 AGG----------LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
                        +   L        +     + Y+ D +      R+  I+    N L 
Sbjct: 62  TPRMLQGPLTNRKIMRDLKRSLTQGKDFSGETINYKKDGSPYHVEWRISAIRDLSGNILC 121

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG 472
              I  +   +  +          ++      + +    ++L  +  A    +  ++ E 
Sbjct: 122 FISIQRDITEKVKKGESVTRHLRLEMGITSATQILLSTSVELKILKYAMEQFLVFLDSER 181

Query: 473 IILSTN----RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528
           + L  N     +           +      V          + +     S    Q     
Sbjct: 182 LYLFKNSENAESAELYLEVKDPSLETSEIPVLQSIVYNQDYSRWKKIFSSGGYLQGNLSE 241

Query: 529 TLGSTK----EEKLLSLRIIIKKLPFS----SCY---------------SLTMHD-IS-- 562
              + K    + ++ S+ +I   +       + +                 T  D IS  
Sbjct: 242 FSENEKKFFDQREICSVTLIPLFVSDEWFGFAGFENFKTTNIVKEEIFTIRTFVDLISVF 301

Query: 563 -EWKQEKNKLSHAKK------------------IAEKESSHKSDFLARVSHEIRTPLTAI 603
            E K    +L   ++                  +AEK +  KS+FLA +SHE+RTPL +I
Sbjct: 302 LERKNILEELKVHREKLEVLVSQRTEELNLQKEMAEKANKAKSEFLANMSHELRTPLNSI 361

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           IGFS +++     P G  R   Y + I  SG  +L+I+ND+LD+S+IE+ K+ L+     
Sbjct: 362 IGFSRLMQ----FPEGMERENRYLDLIFHSGVHLLNIINDILDLSRIEADKLVLNESDFD 417

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIP--RILADLRSVKQIALNILSNAIHFTPS 721
           L E +S ++ ++   A  K++ +   F        I AD + ++Q+ LN+L NAI FT S
Sbjct: 418 LKELISTSVEMILGEAITKKLEMTFEFFPKNANFEIRADPKRIRQVILNLLGNAIKFTDS 477

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
            G+I+I+     N    L V+D+G+G+   E+ K  + F Q+    +   EG+GLGLP+ 
Sbjct: 478 TGKILITLNKLENNF-QLAVQDSGIGIPTEEISKIFETFYQVKGEDRAAYEGSGLGLPIV 536

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           K +V+A+ G   + S   KG+   +IFP
Sbjct: 537 KKIVEAHHGSIQVESALGKGSKFVVIFP 564



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/126 (12%), Positives = 36/126 (28%), Gaps = 5/126 (3%)

Query: 94  YLKEISEELPKTIGNYAFKMIGMRLCDVSDIL-HIDPNNHIGDLLKRQNTWYGKTTLWPI 152
            +  ++    K  G     +IG     +   L +      +   L +   + G+T  +  
Sbjct: 39  KILFVNPAFCKMTGYTKEDLIGKTPRMLQGPLTNRKIMRDLKRSLTQGKDFSGETINYKK 98

Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212
           +G+  +V   ++A  I   +     F    I               R  +    +    +
Sbjct: 99  DGSPYHVEWRISA--IRDLSGNILCF--ISIQRDITEKVKKGESVTRHLRLEMGITSATQ 154

Query: 213 GHSSVE 218
              S  
Sbjct: 155 ILLSTS 160


>gi|24215121|ref|NP_712602.1| histidine kinase sensor protein [Leptospira interrogans serovar Lai
           str. 56601]
 gi|24196185|gb|AAN49620.1| histidine kinase sensor protein [Leptospira interrogans serovar Lai
           str. 56601]
          Length = 731

 Score =  317 bits (812), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 123/568 (21%), Positives = 220/568 (38%), Gaps = 72/568 (12%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYSHG------NLFYANPSFLLLTKYKSVDDIEI 362
                 F+  + +    V++      V           + + NP+F  +T Y   D I  
Sbjct: 2   EPNRTNFEHSQEIYEILVNQISDSMLVTDTQLEPPGPKILFVNPAFCKMTGYTKEDLIGK 61

Query: 363 AGG----------LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
                        +   L        +     + Y+ D +      R+  I+    N L 
Sbjct: 62  TPRMLQGPLTNRKIMRDLKRSLTQGKDFSGETINYKKDGSPYHVEWRISAIRDLSGNILC 121

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG 472
              I  +   +  +          ++      + +    ++L  +  A    +  ++ E 
Sbjct: 122 FISIQRDITEKVKKGESVTRHLRLEMGITSATQILLSTSVELKILKYAMEQFLVFLDSER 181

Query: 473 IILSTN----RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528
           + L  N     +           +      V          + +     S    Q     
Sbjct: 182 LYLFKNSENAESAELYLEVKDPSLETSEIPVLQSIVYNQDYSRWKKIFSSGGYLQGNLSE 241

Query: 529 TLGSTK----EEKLLSLRIIIKKLPFS----SCY---------------SLTMHD-IS-- 562
              + K    + ++ S+ +I   +       + +                 T  D IS  
Sbjct: 242 FSENEKKFFDQREICSVTLIPLFVSDEWFGFAGFENFKTTNIVKEEIFTIRTFVDLISVF 301

Query: 563 -EWKQEKNKLSHAKK------------------IAEKESSHKSDFLARVSHEIRTPLTAI 603
            E K    +L   ++                  +AEK +  KS+FLA +SHE+RTPL +I
Sbjct: 302 LERKNILEELKVHREKLEVLVSQRTEELNLQKEMAEKANKAKSEFLANMSHELRTPLNSI 361

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           IGFS +++     P G  R   Y + I  SG  +L+I+ND+LD+S+IE+ K+ L+     
Sbjct: 362 IGFSRLMQ----FPEGMERENRYLDLIFHSGVHLLNIINDILDLSRIEADKLVLNESDFD 417

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIP--RILADLRSVKQIALNILSNAIHFTPS 721
           L E +S ++ ++   A  K++ +   F        I AD + ++Q+ LN+L NAI FT S
Sbjct: 418 LKELISTSVEMILGEAITKKLEMTFEFFPKNANFEIRADPKRIRQVILNLLGNAIKFTDS 477

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
            G+I+I+     N    L V+D+G+G+   E+ K  + F Q+    +   EG+GLGLP+ 
Sbjct: 478 TGKILITLNKLENNF-QLAVQDSGIGIPTEEISKIFETFYQVKGEDRAAYEGSGLGLPIV 536

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           K +V+A+ G   + S   KG+   +IFP
Sbjct: 537 KKIVEAHHGSIQVESALGKGSKFVVIFP 564



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/126 (12%), Positives = 36/126 (28%), Gaps = 5/126 (3%)

Query: 94  YLKEISEELPKTIGNYAFKMIGMRLCDVSDIL-HIDPNNHIGDLLKRQNTWYGKTTLWPI 152
            +  ++    K  G     +IG     +   L +      +   L +   + G+T  +  
Sbjct: 39  KILFVNPAFCKMTGYTKEDLIGKTPRMLQGPLTNRKIMRDLKRSLTQGKDFSGETINYKK 98

Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212
           +G+  +V   ++A  I   +     F    I               R  +    +    +
Sbjct: 99  DGSPYHVEWRISA--IRDLSGNILCF--ISIQRDITEKVKKGESVTRHLRLEMGITSATQ 154

Query: 213 GHSSVE 218
              S  
Sbjct: 155 ILLSTS 160


>gi|313623104|gb|EFR93377.1| sensor histidine kinase ResE [Listeria innocua FSL J1-023]
          Length = 596

 Score =  317 bits (812), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 79/378 (20%), Positives = 154/378 (40%), Gaps = 42/378 (11%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
             +  E  QL +IL   +DG+   + +  I+ +N    +                F    
Sbjct: 249 SALRQEKEQLSNILVGMADGVIKFSVDKTIILSNPPAEEFLH-----------NWFFSPE 297

Query: 505 TPSVMN------HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM 558
               +         L + L     Q  E        +   +++  ++            +
Sbjct: 298 NTEKVLIPTALNDLLNDTLDKKESQVGEITF----SDRTYVAILTLLYTGEHVRSIVAVI 353

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            D++E KQ +                KSDF+  VSHE+RTP++ + G+SE I +      
Sbjct: 354 RDMTEEKQLE--------------KMKSDFVNNVSHELRTPISMLQGYSEAIIDGV--AQ 397

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
            +    E+A  I      +  +VND+LD++++E+G   +  + + L   + + I+   + 
Sbjct: 398 SDEEVREFAQIIYDESLRIGRLVNDMLDLARMEAGFNQMDNQKLPLAPLLRKVIANFDVL 457

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS----GGQIIISTTHTSN 734
           A E  + +             D   ++Q+ +N++ NAI  T      G  I+  T   + 
Sbjct: 458 AKENFVELGLELETPDLEYSYDPDRMEQVLINLIMNAIRHTGKEGYAGKVILKQTIDETR 517

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGEGTGLGLPLAKAMVDANMGKFY 793
             +++ V D G G+   ++    + F ++  +++  +  GTG+GL + K +V+A+ GK  
Sbjct: 518 NNLVITVSDNGSGIAEEDIPYLFERFYKVDKARKRGKAVGTGIGLAIVKNIVEAHNGKIS 577

Query: 794 IFSTPAKGTLIEIIFPLY 811
           + S   KG+   I  PLY
Sbjct: 578 VESVLGKGSDFIITLPLY 595


>gi|313618121|gb|EFR90221.1| sensor histidine kinase ResE [Listeria innocua FSL S4-378]
          Length = 596

 Score =  317 bits (812), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 79/378 (20%), Positives = 154/378 (40%), Gaps = 42/378 (11%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
             +  E  QL +IL   +DG+   + +  I+ +N    +                F    
Sbjct: 249 SALRQEKEQLSNILVGMADGVIKFSVDKTIILSNPPAEEFLH-----------NWFFSPE 297

Query: 505 TPSVMN------HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM 558
               +         L + L     Q  E        +   +++  ++            +
Sbjct: 298 NTEKVLIPTALNDLLNDTLDKKESQVGEITF----SDRTYVAILTLLYTGEHVRSIVAVI 353

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            D++E KQ +                KSDF+  VSHE+RTP++ + G+SE I +      
Sbjct: 354 RDMTEEKQLE--------------KMKSDFVNNVSHELRTPISMLQGYSEAIIDGV--AQ 397

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
            +    E+A  I      +  +VND+LD++++E+G   +  + + L   + + I+   + 
Sbjct: 398 SDEEVREFAQIIYDESLRIGRLVNDMLDLARMEAGFNQMDNQKLPLAPLLRKVIANFDVL 457

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS----GGQIIISTTHTSN 734
           A E  + +             D   ++Q+ +N++ NAI  T      G  I+  T   + 
Sbjct: 458 AKENFVELGLELETPDLEYSYDPDRMEQVLINLIMNAIRHTGKEGYAGKVILKQTIDETR 517

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGEGTGLGLPLAKAMVDANMGKFY 793
             +++ V D G G+   ++    + F ++  +++  +  GTG+GL + K +V+A+ GK  
Sbjct: 518 NNLVITVSDNGSGIAEEDIPYLFERFYKVDKARKRGKAVGTGIGLAIVKNIVEAHNGKIS 577

Query: 794 IFSTPAKGTLIEIIFPLY 811
           + S   KG+   I  PLY
Sbjct: 578 VESVLGKGSDFIITLPLY 595


>gi|16801127|ref|NP_471395.1| hypothetical protein lin2061 [Listeria innocua Clip11262]
 gi|16414562|emb|CAC97291.1| resE [Listeria innocua Clip11262]
          Length = 596

 Score =  317 bits (812), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 79/378 (20%), Positives = 154/378 (40%), Gaps = 42/378 (11%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
             +  E  QL +IL   +DG+   + +  I+ +N    +                F    
Sbjct: 249 SALRQEKEQLSNILVGMADGVIKFSVDKTIILSNPPAEEFLH-----------NWFFSPE 297

Query: 505 TPSVMN------HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM 558
               +         L + L     Q  E        +   +++  ++            +
Sbjct: 298 NTEKVLIPTALNDLLNDTLDKKESQVGEITF----SDRTYVAILTLLYTGEHVRSIVAVI 353

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            D++E KQ +                KSDF+  VSHE+RTP++ + G+SE I +      
Sbjct: 354 RDMTEEKQLE--------------KMKSDFVNNVSHELRTPISMLQGYSEAIIDGV--AQ 397

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
            +    E+A  I      +  +VND+LD++++E+G   +  + + L   + + I+   + 
Sbjct: 398 SDEEVREFAQIIYDESLRIGRLVNDMLDLARMEAGFNQMDNQKLPLAPLLRKVIANFDVL 457

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS----GGQIIISTTHTSN 734
           A E  + +             D   ++Q+ +N++ NAI  T      G  I+  T   + 
Sbjct: 458 AKENFVELGLELETPDLEYSYDPDRMEQVLINLIMNAIRHTGKEGYAGKVILKQTIDETR 517

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGEGTGLGLPLAKAMVDANMGKFY 793
             +++ V D G G+   ++    + F ++  +++  +  GTG+GL + K +V+A+ GK  
Sbjct: 518 NNLVITVSDNGSGIAEEDIPYLFERFYKVDKARKRGKAVGTGIGLAIVKNIVEAHNGKIS 577

Query: 794 IFSTPAKGTLIEIIFPLY 811
           + S   KG+   I  PLY
Sbjct: 578 VESVLGKGSDFIITLPLY 595


>gi|163848652|ref|YP_001636696.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222526588|ref|YP_002571059.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl]
 gi|163669941|gb|ABY36307.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222450467|gb|ACM54733.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl]
          Length = 915

 Score =  317 bits (812), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 104/648 (16%), Positives = 229/648 (35%), Gaps = 31/648 (4%)

Query: 184 VHVNRVDNDPRALGKRLDKKFSHLH--EIKKGHSSVE---KEKYDIFSQQSPPPHLRMKN 238
           V              RL   F      E+  G    +          ++           
Sbjct: 15  VSDPLAALKAEVTRLRLQNHFLRTVVNEMTSGVIVADAQPDYPITFVNRAFCTITGYAPE 74

Query: 239 KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDF--HTINLNQYTKKQYFGTLQNNS 296
           +V      +       +     +  +  ++ P  E    +  +   +  +     ++++ 
Sbjct: 75  EVIGRHCLFLQGPGTDQAAVTRICEAIAAARPVHERLLNYRKDGQPFWSQIAISPVRDDQ 134

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLL---LT 352
                ++  +   +     ++      + +    +       G  L       +    + 
Sbjct: 135 GRVTAFIGLQTDVTAQVLVEQALAEREQLLRA--VGKMAQIGGWELDLVTQRMVWSEEMF 192

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
               +   E       L   P    +   +      +            T +     S  
Sbjct: 193 AIHELPIGEPPTPDVALWFYPPEVHHLVREAFERCLATGAEWDIELPFRTAR---GQSRW 249

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS-DGIAIINRE 471
           +  I      +  +     G   +   ++ N+  +     +   + +      + + +  
Sbjct: 250 VRSIGQPVW-EDGQIRKLRGTFQDITRSKENELALRASEQRYRMLADMLPGTIVFMFDTG 308

Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
             +     A  K  G        +  T   ++   SV+     + L L     ++    G
Sbjct: 309 LRLTLVAGADLKRLGIDAARFEGQCLTDLFDEPHRSVLLPLCYQAL-LGQSSRIDYTFRG 367

Query: 532 STKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
              +  ++ +     ++       +   +I+  +Q    L  AK+ AE+    ++ FL+ 
Sbjct: 368 EIFDTSIMPIERASGQISGG---LIVGRNITAERQITADLLRAKEAAERTERAQAAFLSA 424

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           +SHE+RTPL A+I  +E++      P            I   G  +L +VN++LD+SKIE
Sbjct: 425 ISHEMRTPLNAVIASAELLLTDTLTP----SQRSLIETIRIGGEALLALVNNVLDLSKIE 480

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALN 710
           +G++ +  EP  +   V   ++L +  A++K +LI      ++P  I++D   ++Q+ +N
Sbjct: 481 AGRVEIAAEPTDVRAIVHAVLNLFKREADQKGLLIEAVIDPHLPALIVSDPARLRQMLMN 540

Query: 711 ILSNAIHFTPSGGQII---ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
           ++SNAI FT  GG +I   +    T + +V + VRDTG G++  +     +PF  + N Q
Sbjct: 541 LVSNAIRFTDRGGVLITASVIGMATDHPQVEIAVRDTGTGISAQQRSHLFQPFNHVDNDQ 600

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
             +  G GLGL ++  +     G+  +   P +G+   +  PL   ++
Sbjct: 601 TRQS-GAGLGLAISAQLAHLMGGELTVAGQPGQGSTFTVTLPLQPVAY 647



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 30/378 (7%), Positives = 79/378 (20%), Gaps = 28/378 (7%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGKTTLWPIE 153
           +  ++       G    ++IG     +            I + +      + +   +  +
Sbjct: 58  ITFVNRAFCTITGYAPEEVIGRHCLFLQGPGTDQAAVTRICEAIAAARPVHERLLNYRKD 117

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
           G        +A  P+       + F G                    ++    + ++ + 
Sbjct: 118 G--QPFWSQIAISPVRDDQGRVTAFIGLQT--DVTAQVLVEQALAEREQLLRAVGKMAQI 173

Query: 214 HSSVEKEKYDIFSQQS--------PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
                                   P       +          H    L  E +    + 
Sbjct: 174 GGWELDLVTQRMVWSEEMFAIHELPIGEPPTPDVALWFYPPEVHH---LVREAFERCLAT 230

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE---SFEYLSHRNHPSLSAYFDEGENLT 322
            +    +  F T        +     +  + +       +                E   
Sbjct: 231 GAEWDIELPFRTARGQSRWVRSIGQPVWEDGQIRKLRGTFQDITRSKENELALRASEQRY 290

Query: 323 PETVDKCP-IPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
               D  P    F++  G  L     + L      +         L+ L D P  S    
Sbjct: 291 RMLADMLPGTIVFMFDTGLRLTLVAGADLKRLGIDAARFEGQ--CLTDLFDEPHRS---V 345

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
           + P+                    ++   S+        + +           E +    
Sbjct: 346 LLPLCYQALLGQSSRIDYTFRGEIFD--TSIMPIERASGQISGGLIVGRNITAERQITAD 403

Query: 441 RINKRKMEIEVMQLCSIL 458
            +  ++      +  +  
Sbjct: 404 LLRAKEAAERTERAQAAF 421


>gi|37520585|ref|NP_923962.1| two-component hybrid sensor and regulator [Gloeobacter violaceus
           PCC 7421]
 gi|35211579|dbj|BAC88957.1| two-component hybrid sensor and regulator [Gloeobacter violaceus
           PCC 7421]
          Length = 1130

 Score =  317 bits (812), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 127/777 (16%), Positives = 256/777 (32%), Gaps = 92/777 (11%)

Query: 119 CDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFS-G 177
            +     +     ++  L + +      T               L+AL    +  E    
Sbjct: 83  EEFLAPFYQGRVQYLRSLEEARRVVQLITVRIE---DPQMRSQMLSALDAAGQAAESWYE 139

Query: 178 FRGFGIVHVNRVDNDPRALGK-RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM 236
           F   G +   R  +   AL   R  +        ++  + V +    +F+Q       R 
Sbjct: 140 FVRAGEIESLRRGDVAAALDLGRSRQGKERFDRFRQAAAEVRRRNDLLFAQLEARISERQ 199

Query: 237 KNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS 296
                      A    +       L+ S        E           + +    +  N 
Sbjct: 200 NQSEILSIGLLAMAGLLAGAISLGLVRSLRRPFAALEAAAVALGEGNFQTRVPAEVIEND 259

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI--PFFVYSHGNLFYANPSFLLLTKY 354
            E        N  +        E    + +    +     V             L     
Sbjct: 260 DELAVLARSFNQTAERLGRQNLELRERDILGSLRVLDAVIVEEIDLDCLCGR-LLESLGE 318

Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS---- 410
            +   +     L       + S   +     +   +     A++R   +      +    
Sbjct: 319 LTGSQLGALYLLEGERLLLQSSLGLSAPAPAIRLGEGMVGLAASRCAPVVLQSPPTGEPL 378

Query: 411 -----------LAMTFIPFEKANQFPENMPQNGIEPEDVDTR-----------------I 442
                       +++  P     Q    +   G+EP     R                  
Sbjct: 379 SLETPAGALQPRSLSAWPLLSKQQLVGVLFVAGLEPLAPMARNLLESVSSQLAVALLNSR 438

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL----RKPFT 498
           + R +E    +L +  E  SDG++I +  G     N A  ++ G P +  L     +   
Sbjct: 439 SVRAVEEARARLEATFEQMSDGVSIADARGNPQLINPAGLRILGLPADQDLTDSDWQNRF 498

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----Y 554
                    +    +    ++    T+        ++ + + L +    L          
Sbjct: 499 EVFTLEGEPLEAQEVPVRRAVRFGTTVRADLQIRIRQGRSVLLSVSASPLKDGRGNIYGV 558

Query: 555 SLTMHDISEWKQEKNKLSHA---------------------------------------- 574
                D++  ++ + +L                                           
Sbjct: 559 VAVFRDVTVERERERRLVQQARELEALNTELAATNEELEAQQSELEAINAELEQQRLQIE 618

Query: 575 --KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
              +   +    K++FLA +SHE+RTPL AIIGFS+++   +      P+ +   + + +
Sbjct: 619 SQNQELVEADRQKNNFLASMSHELRTPLNAIIGFSQLLLRNKNLQE-QPQVLLQLDRVYQ 677

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
           +G + L +VND+LD++KI++GK+ L ++PV+L+  V E  + ++  A +K + +R +   
Sbjct: 678 NGKIQLRLVNDILDLAKIKAGKVELRYQPVALEPFVREVYAALESLALQKNLSVRIAVDP 737

Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752
           +I  +  D + ++ I +N+LSNA  +T  G ++ +     + +   L VRDTGVG+   +
Sbjct: 738 SIGSVETDPQQLRTILINLLSNAFKYTERG-EVEVRARRPAADRFELEVRDTGVGIDPDQ 796

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            +K    F ++  +   +  GTGLGL + K +V    G+  + STP  G+   +  P
Sbjct: 797 QQKVFDEFSRLEGAATRQASGTGLGLAICKRLVTLMGGEISLVSTPGVGSTFTVRLP 853



 Score = 44.6 bits (104), Expect = 0.068,   Method: Composition-based stats.
 Identities = 23/182 (12%), Positives = 52/182 (28%), Gaps = 14/182 (7%)

Query: 33  GFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAH 92
           G E       N       Q      N  SV       +     F+ +   V      DA 
Sbjct: 411 GLEPLAPMARNLLESVSSQLAVALLNSRSVRAVEEARARLEATFEQMSDGVSI---ADAR 467

Query: 93  GYLKEISEELPKTIGNYAF-KMIGMRLCDVSDILHIDPNN------HIGDLLKRQNTWYG 145
           G  + I+    + +G  A   +      +  ++  ++          +   ++   T   
Sbjct: 468 GNPQLINPAGLRILGLPADQDLTDSDWQNRFEVFTLEGEPLEAQEVPVRRAVRFGTTVRA 527

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
              +   +G +  V + ++A P+        G     +     V+ +      +  ++  
Sbjct: 528 DLQIRIRQGRS--VLLSVSASPLKDGRGNIYGV--VAVFRDVTVERERERRLVQQARELE 583

Query: 206 HL 207
            L
Sbjct: 584 AL 585


>gi|52079902|ref|YP_078693.1| two-component sensor histidine kinase [Bacillus licheniformis ATCC
           14580]
 gi|52785274|ref|YP_091103.1| KinE [Bacillus licheniformis ATCC 14580]
 gi|52003113|gb|AAU23055.1| two-component sensor histidine kinase [Bacillus licheniformis ATCC
           14580]
 gi|52347776|gb|AAU40410.1| KinE [Bacillus licheniformis ATCC 14580]
          Length = 736

 Score =  317 bits (812), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 101/744 (13%), Positives = 239/744 (32%), Gaps = 65/744 (8%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + +D    + + ++   K + +    ++     D    +  D  N        +     
Sbjct: 45  IFILDKQMNIIKANDAACKILQSQKKNLLNRSALDFLHAVPPDELNQNIHRFLERGYAKK 104

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +  +    G+  Y+    +          F     F ++                +K F 
Sbjct: 105 EVAIRLDNGSVKYIEFTASK---GIGEDCF-----FVVMRDISSKKILERERTINEKLFK 156

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPP--PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
            L         +  ++                 K+++S L        +           
Sbjct: 157 DLFHRAVEGIVIFDKQGCFIDANHSFCQSFEIEKSELSKLKLSQFVSPENKGRLDKIWNA 216

Query: 264 SEESSLPEQEDFHTIN-LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
                  + E    +        +    +   N              S+     + E   
Sbjct: 217 LFRRGKAKGELPVRLRSGEDRLFELTITSNILNGFYMSIMRDITEKRSMEKQLFKSEERF 276

Query: 323 PETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDI--------EIAGGLSTLLDAP 373
            E  +       +  + G +  AN S   + +      +        +        +   
Sbjct: 277 REVFENAMDAIILMNNDGRIVKANQSACKIFELPMDQLLNKKMTDFIDRTDQRYHAIQKQ 336

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
                     ++   ++            I ++ ++   +                    
Sbjct: 337 YDQKGEIRAELLFRMANGQYKELEFTSKRIMFDSQDLTIL-------------------- 376

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
                D +  ++++    ++   +   + DGI + N +  I+  N    K+   P+E + 
Sbjct: 377 -RNVSDRKRMEQELRESELKFRKVFNGSMDGIVLFNNQYDIIDANPLAGKILSIPLEQLK 435

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553
                  +              I   ++   +  +     +      L    K+    + 
Sbjct: 436 TSNLLDVISGYHIENAASPAKTISFEEMDNDIPFLLSDQKR-----ILEFSFKRNIIQNM 490

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
               + D++E K+ + +L  +  +         +  A ++HEIR P+TA+ GF +++K  
Sbjct: 491 NLAMLRDVTERKELEERLRKSDTLHV-----VGELAAGIAHEIRNPMTALKGFIQLLK-- 543

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
             G + N  +  Y N I      +  I+ + L ++K ++    + +E  ++ + + + + 
Sbjct: 544 --GSIQNEDHALYFNVITSELKRIESIITEFLILAKPQA----IMYEEKNIVKIMQDTMD 597

Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
           L+   AN   + +     + IP I  +   +KQ+ +NIL NAI   P GG + +S     
Sbjct: 598 LLHAQANLDNVQMHLKCEDGIPLIYCEPNQLKQVFINILKNAIEVMPDGGNVYVSIKPKG 657

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
           ++ +I+ + D G+GMT  +L++  +PF         +  GTGLGL ++  +++ + GK  
Sbjct: 658 DDHIIVSLADEGIGMTEDKLKRLGEPFYTT------KERGTGLGLMVSYKIIEEHKGKIE 711

Query: 794 IFSTPAKGTLIEIIFPLYDTSHPH 817
           + S   +GT   +  P+       
Sbjct: 712 VESEEGRGTTFHLTLPIRQQHEEE 735



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 53/137 (38%), Gaps = 3/137 (2%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           R    K++ ++ Q   +   T D I I++++  I+  N A  K+     +++L +    F
Sbjct: 21  RKENAKLKADLYQYELLFNGTLDAIFILDKQMNIIKANDAACKILQSQKKNLLNRSALDF 80

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
           L    P  +N  +   L     +   K          +  +     K     C+ + M D
Sbjct: 81  LHAVPPDELNQNIHRFLERGYAK---KEVAIRLDNGSVKYIEFTASKGIGEDCFFVVMRD 137

Query: 561 ISEWKQEKNKLSHAKKI 577
           IS  K  + + +  +K+
Sbjct: 138 ISSKKILERERTINEKL 154


>gi|300697811|ref|YP_003748472.1| sensory histidine kinase in two-component regulatory system
           [Ralstonia solanacearum CFBP2957]
 gi|299074535|emb|CBJ54086.1| sensory histidine kinase in two-component regulatory system
           [Ralstonia solanacearum CFBP2957]
          Length = 675

 Score =  317 bits (812), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 98/378 (25%), Positives = 172/378 (45%), Gaps = 22/378 (5%)

Query: 446 KMEIE--VMQLCSILEATSDGIAIINREGIILST-NRAVSKLFGYPVEDILRKPFTVFLE 502
           + +      +L + L+A+   +  ++         N     +FG    ++L +       
Sbjct: 151 ETQQRVSQQRLLAALQASPISLYDVDNTMHFTWVHNP----VFGLQPHELLGRTVREVFG 206

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHD 560
           +   S +      +++      +E        +  +  + ++  +         +  + D
Sbjct: 207 RRAASRLTEAGQRVIATGSPTRVEFAFRRRHTQRVVYDVVVMPLRDDTGEIIGLTNAVID 266

Query: 561 ISEWKQEK-------NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
           I+E +Q +          S A++ AE+ S  K DFLA VSHE+RTPL A++G+++++  +
Sbjct: 267 ITEHRQAEARRTQLLEAESRAREEAERASRLKDDFLATVSHELRTPLNAVLGWAQLLAMR 326

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
              P     +      I+RS    + +++DLLD+S I SGK+ L   PV L + +  A  
Sbjct: 327 ---PYDEAMFRRGLAAIERSARTQVHLIDDLLDMSAILSGKVPLEIGPVDLADVLERARE 383

Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
            ++  A EK+I I T +   +P +  D   +KQ+  N+L+NA+ FTP GG I +S   + 
Sbjct: 384 TIEPMAREKQITIDTEYPP-VPLLQGDAGRLKQVFWNLLANAVKFTPEGGHIRVSVHASP 442

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
              V   VRDTG+G+    L      F Q   S   R  G GLGL +AK +V+ + G+  
Sbjct: 443 EGLVA-TVRDTGIGIEPTFLPHVFDRFQQADLSSTRRHGGLGLGLAIAKQLVELHHGRIT 501

Query: 794 IFST-PAKGTLIEIIFPL 810
             S     GT + +  PL
Sbjct: 502 ATSNGTNLGTTMTVTLPL 519



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/245 (11%), Positives = 63/245 (25%), Gaps = 17/245 (6%)

Query: 105 TIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLA 164
             G    +++G  + +V            G  +    +       +        V  D+ 
Sbjct: 188 VFGLQPHELLGRTVREVFGRRAASRLTEAGQRVIATGSPTRVEFAFRRR-HTQRVVYDVV 246

Query: 165 ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDI 224
            +P+     E  G     I           A   +L +  S   E  +  S ++ +    
Sbjct: 247 VMPLRDDTGEIIGLTNAVI--DITEHRQAEARRTQLLEAESRAREEAERASRLKDDFLAT 304

Query: 225 FSQQSPPPHLRMK--NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQ 282
            S +   P   +    ++ ++  Y                 ++   + +  D   I   +
Sbjct: 305 VSHELRTPLNAVLGWAQLLAMRPYDEAMFRRGLAAIERSARTQVHLIDDLLDMSAILSGK 364

Query: 283 YTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNL- 341
              +     L +  + + E +             E            P+P      G L 
Sbjct: 365 VPLEIGPVDLADVLERARETIEPMAREKQITIDTEYP----------PVPLLQGDAGRLK 414

Query: 342 -FYAN 345
             + N
Sbjct: 415 QVFWN 419


>gi|329955232|ref|ZP_08296189.1| PAS domain S-box protein [Bacteroides clarus YIT 12056]
 gi|328526231|gb|EGF53250.1| PAS domain S-box protein [Bacteroides clarus YIT 12056]
          Length = 929

 Score =  317 bits (812), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 111/488 (22%), Positives = 198/488 (40%), Gaps = 28/488 (5%)

Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
           F  +  G L +AN  F         DDI     L+           N  + ++       
Sbjct: 277 FAAHEDGTLVFANRRFREHHNIGVADDISE---LNIYRIDMNTPGGNFWQGLLHSLKKGE 333

Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
             +     + +  +    LAM    +   +   E +   G   +      N+++++    
Sbjct: 334 KRSGFVLYNPLP-DHPEVLAMEGSAYWVTSDKGEAILW-GFGRDITQRIKNEQQIKRFSQ 391

Query: 453 QLCSILEATSDGIAIIN-REG-IILSTNR-AVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
            L   +E    GI + + R G   L  NR + ++    P+++ L K    F   +     
Sbjct: 392 ILDKTIENLPAGIVVKDIRSGFKYLYRNRESYNR--NIPLKEALGKDDFDFYPFDVAQEK 449

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQ 566
                EI    + +    IT    +  K + L     ++              DI+E ++
Sbjct: 450 RTQDIEIARTGVEK--HWITEEHDQNGKSIFLDKRKIRIESDDFPPILLSIEWDITEMER 507

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
            K +L  AK+ AE     KS FLA +SHEIRTPL AI+GFS +I         +     Y
Sbjct: 508 MKRELLVAKEKAETSDQLKSAFLANMSHEIRTPLNAIVGFSRIIAE----STDDEERKNY 563

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
            + ++ +   +L ++N++LD+SKIE+G +     P+ L    +E  + ++       + +
Sbjct: 564 YDIVEANNERLLQLINEILDLSKIEAGMVEFTIAPMRLHLLCNEIYNALKFRCPM-GVEL 622

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-EVILRVRDTG 745
               ++    I  D   + Q+  N++ NA  FT +G    +S  +     E+   V DTG
Sbjct: 623 VYEASDEDIVIEGDKNRIFQVVSNLIGNAFKFTTNGS---VSYGYRRKGSEIEFHVSDTG 679

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+   +L K  + F ++ N      +GTGLGL + K +++   G   + S   KGT   
Sbjct: 680 IGIEADKLSKVFERFVKVNNF----AQGTGLGLSICKTIIERLGGTISVSSEMGKGTTFL 735

Query: 806 IIFPLYDT 813
              PL ++
Sbjct: 736 FTLPLSES 743



 Score = 46.6 bits (109), Expect = 0.017,   Method: Composition-based stats.
 Identities = 19/143 (13%), Positives = 38/143 (26%), Gaps = 15/143 (10%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILST---NRAVSKLFGYPVEDILRKPFTVFL 501
           +  E     L    +       +++R GI +     N     L+    + +  K     L
Sbjct: 20  KNAENAEELLKLTSDTM----ILLDRNGICVDIAVYN---VDLWFLKEDRLQGKNILRLL 72

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDI 561
              T   +     ++L+     +               +        P+         DI
Sbjct: 73  PPVTYRQVYPEFEKVLTRREVSSRNYELAI-----GDTTYFFKCIMRPYEDMVLCQYRDI 127

Query: 562 SEWKQEKNKLSHAKKIAEKESSH 584
           +E  Q K KL    +   +    
Sbjct: 128 TERSQRKLKLEKTNRELNEIQKA 150



 Score = 43.5 bits (101), Expect = 0.16,   Method: Composition-based stats.
 Identities = 31/290 (10%), Positives = 71/290 (24%), Gaps = 27/290 (9%)

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSV--D 358
           +Y             ++      E      I  + Y  G   +        T +  V   
Sbjct: 123 QYRDITERSQRKLKLEKTNRELNEIQKAALIGRWQYDSGKKSFC------YTGHSGVMCT 176

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
           + E    L          D       ++           A +      R+    +    F
Sbjct: 177 EEEQEILLEDYKTHILPEDREVFGKWLMQNLQG---DMEASIDYRIHFRKRVFYIRLKTF 233

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
               Q   N+   G      D +  +  +      L   +  +++ I   + +G ++  N
Sbjct: 234 SYEKQPDGNILLEGYIQNITDIQQRRNDI----NLLTHAINNSTEDIFAAHEDGTLVFAN 289

Query: 479 RAVSKLFGYP-VEDILRKPFTVF-LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK-- 534
           R   +       +DI         +     +     L  +   + R              
Sbjct: 290 RRFREHHNIGVADDISELNIYRIDMNTPGGNFWQGLLHSLKKGEKRSGFVLYNPLPDHPE 349

Query: 535 ----EEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
               E     +          +       DI++  + + ++    +I +K
Sbjct: 350 VLAMEGSAYWV----TSDKGEAILWGFGRDITQRIKNEQQIKRFSQILDK 395


>gi|262199699|ref|YP_003270908.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
 gi|262083046|gb|ACY19015.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
          Length = 865

 Score =  317 bits (812), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 107/639 (16%), Positives = 216/639 (33%), Gaps = 28/639 (4%)

Query: 180 GFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK 239
           G   +   +      A  + LD     +                + +     P   +   
Sbjct: 27  GIATMWTFQERVAEFAEQRELDHSVESVVSTYLDAIDDLARGLFMIAAGQREPGKELV-- 84

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
           V S       ++ +        +    +  P  +    ++                    
Sbjct: 85  VESERRLALIEERMRNVLWEHTVVDPGALAPCLDIRRELSEEARVLLTLVPDTMPRGVSL 144

Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDD 359
            +         +    +    L+    +                           K+   
Sbjct: 145 SDSERSALAGDIEEALNRATKLSQRADEYVSGLVAELRS----------------KTQHR 188

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
           +     L+   +   +    A     L  +     +  ARLH +                
Sbjct: 189 LAQQAHLTRRTNTIAIVTVAASLGFALMLAVAFARSLVARLHGLAKVVRAFGEGELTRRT 248

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
                 E      +     D    +  + +    +  +L+  ++ + +++ + II   NR
Sbjct: 249 HERSPDELGELGRVFDRMADAIQAQDGLRLSKKYVDDVLDTMTNALVVLDEDAIIEKVNR 308

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
           A  +L      +++           + +             + Q  E        E +++
Sbjct: 309 ATCRLLACDESELVGARAERIFGMFSEATGAATPVPWAEEHM-QDAEIALFTRQGEVRMV 367

Query: 540 SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
           +      +    +     + DI+E K+   +L  AK  AE  +  K+ FLA +SHE+RTP
Sbjct: 368 AFSGATMRDEGDAKIVCMLEDITERKRLIAELIEAKGAAESATKAKTAFLANMSHELRTP 427

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L AI+G+++++ +         +  +    +  SG  +  ++ DLLDISKIES +M L  
Sbjct: 428 LNAILGYAQMLGDDDN---LTEQQRDALTTMRTSGEHLATLLEDLLDISKIESDRMELAP 484

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHF 718
               L   +   ++  ++ A  K +      + ++P  + AD R ++Q+ +N+L NAI F
Sbjct: 485 SEFELTRFLDGLVAPFRMRAESKELHFGYEISGDLPGMVRADERRLRQVLINLLGNAIKF 544

Query: 719 TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
           T  G  +          +V  +V DTG G+    +E    PF Q    +Q + EGTGLGL
Sbjct: 545 TERGS-VTFRANMHD-GKVRFQVEDTGRGIPGDAMEDIFAPFRQAGQPEQ-QVEGTGLGL 601

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIE--IIFPLYDTSH 815
            ++K +V+   G   + S   +G++    +  P  +  H
Sbjct: 602 AISKRLVELMDGSIGVESVLGRGSVFWAEVALPAVEGWH 640


>gi|298528808|ref|ZP_07016212.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298512460|gb|EFI36362.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 789

 Score =  317 bits (812), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 112/624 (17%), Positives = 208/624 (33%), Gaps = 48/624 (7%)

Query: 215 SSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQED 274
             V      I    S    L     ++S           +      LL      +  +  
Sbjct: 43  IFVNHAMASIHGYDSAESMLESVTDIASQIYAEPADRGRITR----LLEVHGEVVNHECR 98

Query: 275 FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK----CP 330
               +  +         +  +      +    +  +      E +    E +D      P
Sbjct: 99  IIRRDGYEIWVSLNIRAVTGSDGLISCWHGFVSDITRRKQSQEMQKKHHEKLDSFLRDIP 158

Query: 331 IPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389
                ++  G + Y N  +         + +       ++        +  I        
Sbjct: 159 AMICCFNPQGVITYINQQYCDYFGMPQEELLG------SIFLDLIPGKDKEISQQNFTSL 212

Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449
                      H +Q          +I     ++         +  +  + +  + K+E 
Sbjct: 213 TTEH-PVKTVEHRVQLPDGTIRWHRWIDRAVFDEAGTPEYYQSVGLDITEIKTQQLKLE- 270

Query: 450 EVMQLCSILEATSDGIAIINR-----EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
                 SI EA  D   +I       +  I   +     + GY  ++++ +   +   + 
Sbjct: 271 ------SIFEACKDISFVIAESCPEGDLRITDFSPGAESVHGYQKQEVVGQSVAMLHSRE 324

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY--SLTMHDIS 562
                    T I                 K  ++      +  L             DIS
Sbjct: 325 DLEKFPEIYTSIRQGR---VWRGSMFMQRKNGQVFPALFTVYPLEIEDRLSALGVAVDIS 381

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E ++ +  L  AK+ AE  S  KS FLA +SH IRTP+  I+GF+ +++        + R
Sbjct: 382 ELEEVRRALQKAKEAAEAASQAKSTFLANMSHGIRTPMNIIMGFARIMERDFSLSRQHLR 441

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                  I R+ + +L I+ND+LD+S IE+G++  H E   L     + + ++   A+ +
Sbjct: 442 Q---VQTISRNADNLLRILNDILDMSSIEAGQVRQHAEDFDLHHFFEQLMGMLLSRADSR 498

Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSG------GQIIISTTHTSNE 735
            + +    A  IPR +  D   ++QI +N+L NA+ FT  G        I   +    + 
Sbjct: 499 GLELSFERAGYIPRYVHGDQGMLRQILINLLDNALKFTSRGWVKCSIKNIQARSAADDSP 558

Query: 736 EV---ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
           +V     RV DTG G+++ E E   +PF Q       +  GTGLGL ++        G  
Sbjct: 559 DVFKLEFRVEDTGPGISSDEQENLFEPFYQTVAGT--QEGGTGLGLAISLRYSRIMGGDL 616

Query: 793 YIFSTPAKGTLIEIIFPLYDTSHP 816
           +  +    G+   +  PL     P
Sbjct: 617 WYENRQGGGSCFCLHVPLLPACRP 640



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/259 (13%), Positives = 78/259 (30%), Gaps = 12/259 (4%)

Query: 318 GENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
                 + +   P+  F     G   + N +   +  Y S + +     ++ +       
Sbjct: 18  ASLDYQDMLMHAPLGCFQSTPEGKFIFVNHAMASIHGYDSAESMLE--SVTDIASQIYAE 75

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
             +  +   L       +        I       + ++                +G   +
Sbjct: 76  PADRGRITRLLEVHGEVV---NHECRIIRRDGYEIWVSLNIRAVTGSDGLISCWHGFVSD 132

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
               + ++   +    +L S L      I   N +G+I   N+     FG P E++L   
Sbjct: 133 ITRRKQSQEMQKKHHEKLDSFLRDIPAMICCFNPQGVITYINQQYCDYFGMPQEELLGSI 192

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--- 553
           F   +      +     T + +    +T+E        +  +   R I + +   +    
Sbjct: 193 FLDLIPGKDKEISQQNFTSLTTEHPVKTVEHRV--QLPDGTIRWHRWIDRAVFDEAGTPE 250

Query: 554 -YSLTMHDISEWKQEKNKL 571
            Y     DI+E K ++ KL
Sbjct: 251 YYQSVGLDITEIKTQQLKL 269



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/366 (8%), Positives = 96/366 (26%), Gaps = 33/366 (9%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN--HIGDLLK-RQNTW 143
           +     G    ++  +    G  + + +   + D++  ++ +P +   I  LL+      
Sbjct: 34  FQSTPEGKFIFVNHAMASIHGYDSAESMLESVTDIASQIYAEPADRGRITRLLEVHGEVV 93

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +  +   +G    + + L    +   +   S + GF  V         + + K+  +K
Sbjct: 94  NHECRIIRRDG--YEIWVSLNIRAVTGSDGLISCWHGF--VSDITRRKQSQEMQKKHHEK 149

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQ----SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
                            +  I              + +   S   +    KD  +  + +
Sbjct: 150 LDSFLRDIPAMICCFNPQGVITYINQQYCDYFGMPQEELLGSIFLDLIPGKDKEISQQNF 209

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
             LT+E      +      +      +     + + +     Y S     +         
Sbjct: 210 TSLTTEHPVKTVEHRVQLPDGTIRWHRWIDRAVFDEAGTPEYYQSVGLDITEIKTQQLKL 269

Query: 320 NLTPE--------TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
               E          + CP          +   +P    +  Y+  + +  +  +    +
Sbjct: 270 ESIFEACKDISFVIAESCPEGDL-----RITDFSPGAESVHGYQKQEVVGQSVAMLHSRE 324

Query: 372 APK---------LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
             +                  + + R +     A   ++ ++     S     +   +  
Sbjct: 325 DLEKFPEIYTSIRQGRVWRGSMFMQRKNGQVFPALFTVYPLEIEDRLSALGVAVDISELE 384

Query: 423 QFPENM 428
           +    +
Sbjct: 385 EVRRAL 390


>gi|261409327|ref|YP_003245568.1| histidine kinase [Paenibacillus sp. Y412MC10]
 gi|261285790|gb|ACX67761.1| histidine kinase [Paenibacillus sp. Y412MC10]
          Length = 559

 Score =  317 bits (812), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 81/259 (31%), Positives = 138/259 (53%), Gaps = 8/259 (3%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E ++   +L  AK+ AE  +  K++FLA +SHEIRTP+  +IG  +++ +          
Sbjct: 147 ELEKINQELVLAKEEAEIAAKAKTEFLAMMSHEIRTPMNGVIGMIDLLMDSEL----QDE 202

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             EYA  I  S + +++I+ND+LD SK+ESGKM L   P  L   V E   L    A++K
Sbjct: 203 QREYATIIRNSADALVNIINDILDFSKMESGKMELEEYPFDLKSCVQEVFGLFSGEASKK 262

Query: 683 RILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEV--I 738
            + +     + IP  +  D+  ++Q+ +N++SNA+ FT  GG  +++S        +   
Sbjct: 263 NLELTYYIEDQIPSMVFGDMGRLRQVLVNLVSNAVKFTNEGGVYLVVSLAKAEENRLTLE 322

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
             V+DTG+G+++ +L++  KPF Q+ +S   R  GTGLGL + K++V    G+  + S  
Sbjct: 323 FTVKDTGIGISSKKLDRLFKPFSQLDSSMTRRYGGTGLGLAICKSLVQMMGGEIEVDSKE 382

Query: 799 AKGTLIEIIFPLYDTSHPH 817
            +G        ++     H
Sbjct: 383 GEGATFVFTICVHTHEEEH 401


>gi|118581551|ref|YP_902801.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM
            2379]
 gi|118504261|gb|ABL00744.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM
            2379]
          Length = 1309

 Score =  317 bits (812), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 95/786 (12%), Positives = 230/786 (29%), Gaps = 84/786 (10%)

Query: 93   GYLKEISEELPKTIGNYAFKMIGMRLCDVS---DILHI-DPNNHIGDLLKRQNTWYGKTT 148
            G + +++E +    G    ++    +  +S       I D    I          + +  
Sbjct: 407  GVIVDVNERVYDMYGYSRSELANADVSLISSGQPSYGISDAKKWIDRAAH-GEPQHFEWL 465

Query: 149  LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                +G+  +V + +  + I  ++                       +    +K+   + 
Sbjct: 466  ARRKDGSLFWVDVRMRRVSIGGKDCLLVNSS------DITERKQQEEVSHDSEKRLLQII 519

Query: 209  EIKKGHSSVEKEKYDIFSQQSPPPHLR-------------------MKNKVSSLTEYYAH 249
            +       V  ++  + +       L                      ++   L +    
Sbjct: 520  DFLPDAIMVINQQGRVIAWNRSMEELTGVASENMIGKGDYEYSIPIYGSRRPVLVDLVFM 579

Query: 250  KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
             ++  K  K+     +       E    +   + +       L +++  +   +      
Sbjct: 580  SEEERKGNKHYSSIKKVGDCLYAEGDSLVRGEKRSLWAITRPLFDSTGNAVGAIESVRDV 639

Query: 310  SLSAYFD----EGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAG 364
            +          +      + ++  P    + +    +   N +   +T     + +    
Sbjct: 640  TERKQAKDLIVKANKQLEDIIEFLPDATLIVNSERKIIAWNHAMEEMTGVSKTEVLGEEH 699

Query: 365  --------GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
                    G         + D N          D      +A              +   
Sbjct: 700  SVTTIPFYGYRRQYIIDYILDQNEELLSNYSWFDHRGNTYNAEAFAPALYGGKGAHIWVA 759

Query: 417  PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476
                 +     +       +  D R  +  +         ++E   D +   + EG ++ 
Sbjct: 760  ASPMYDDQGNMIAVIESVRDITDRRRAEEALRRSEANYRMVIENIQDVLYRGDAEGRLIM 819

Query: 477  TNRAVSKLFGY-PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
             + +  KL G   ++D L K          P   + +   I                  +
Sbjct: 820  VSPSALKLLGCGSLDDFLGKSIADTFYFQ-PEKRSEFFELIRQHGK--VTNYEVELKKHD 876

Query: 536  EKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKES--SHKSDFL 589
               + +          +           DI+E K+ + +    ++   +           
Sbjct: 877  GTPVMVETSSNAYYDENGNFAGIEGLFRDITERKKGEQERKKLEEQLIQAQKLEAIGTLA 936

Query: 590  ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
            A ++H+    L+ I+G++E+  N+       P+       +  + N   D+V  +L   +
Sbjct: 937  AGIAHDFNNILSGIMGYTELSLNKV---KEQPKVYRNMEQVLTAANRAKDLVKQILTFCR 993

Query: 650  IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709
                K +   +P S+   + E    ++       I ++         I+AD   + Q+ +
Sbjct: 994  ----KAHHETKPTSVIPILQEVAKFMRASLPA-TIELKLRIETESDIIIADSSQLHQVLV 1048

Query: 710  NILSNA---IHFTPSGGQ-------IIISTTHTSNEE-------VILRVRDTGVGMTNYE 752
            N+ +NA   +     GG        + + +              + L VRD+G+G+    
Sbjct: 1049 NLCTNAGYAMK--DKGGVLEICLADVTVDSRTLPQGSTFAAGHCLELSVRDSGMGIEPEN 1106

Query: 753  LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
            L +   P+          GEGTGLGL +   ++ ++ G   ++S   KGT+  I  PL  
Sbjct: 1107 LPRIFDPYFTTKGP----GEGTGLGLAMVHGIIKSHGGDIRVYSELGKGTVFRIYLPLMR 1162

Query: 813  TSHPHD 818
             +  H+
Sbjct: 1163 WNKGHE 1168



 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 39/308 (12%), Positives = 93/308 (30%), Gaps = 50/308 (16%)

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDI 360
           +++R          E E       D      F++    G +   N     +  Y   +  
Sbjct: 369 VTNRKKRRAERLLRENEEWYRTIFDMSNNAIFIHDPRTGVIVDVNERVYDMYGYSRSELA 428

Query: 361 EIAGGL------------STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
                L            +                 +  R D +      R+  +    +
Sbjct: 429 NADVSLISSGQPSYGISDAKKWIDRAAHGEPQHFEWLARRKDGSLFWVDVRMRRVSIGGK 488

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468
           + L +                      +  + +  +        +L  I++   D I +I
Sbjct: 489 DCLLVNSS-------------------DITERKQQEEVSHDSEKRLLQIIDFLPDAIMVI 529

Query: 469 NREGIILSTNRAVSKLFGYPVEDILRK---PFTVFLEQNTPSVMNH--YLTEILSLDLRQ 523
           N++G +++ NR++ +L G   E+++ K    +++ +  +   V+    +++E      + 
Sbjct: 530 NQQGRVIAWNRSMEELTGVASENMIGKGDYEYSIPIYGSRRPVLVDLVFMSEEERKGNKH 589

Query: 524 TLEKITLG----------STKEEKLLSLRIIIKKLPFSSCYSLT--MHDISEWKQEKNKL 571
                 +G             E++ L            +       + D++E KQ K+ +
Sbjct: 590 YSSIKKVGDCLYAEGDSLVRGEKRSLWAITRPLFDSTGNAVGAIESVRDVTERKQAKDLI 649

Query: 572 SHAKKIAE 579
             A K  E
Sbjct: 650 VKANKQLE 657



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 47/411 (11%), Positives = 115/411 (27%), Gaps = 32/411 (7%)

Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA 248
              +           FS ++  +      +K    +     P   + +       T    
Sbjct: 120 AVKNRSRFFPEAVVSFSGINGFRPAMLEGQKRISGVVEDVDPAGTIGLIMATLPETREIV 179

Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
              D  ++    L   E+           +++ +   +    +  +  K     L     
Sbjct: 180 LLIDDTESSNEVLTVVEKEIGQ--NKHLRLSVLRSPAQAELISAVSALKPGSVLLQGNFS 237

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYSH--------------GNLFYANPS--FLLLT 352
              + +  E E++    +  C +P F                  G     N +   L L 
Sbjct: 238 RDRTGHTYEFEDVLATILPHCKVPVFSLWDFLAGKGIMGGSLLSGERQGENAARIALRLM 297

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
             + V  +E    L  L        +           +      +       + R +   
Sbjct: 298 AGEDVPVMERTPPLRML--------DYRQLQRFNLEKNTPPAGVTVINRPQSFFRIHFKY 349

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE- 471
           +         Q    +            R  +R +        +I + +++ I I +   
Sbjct: 350 VMVGAVILFLQLSAIIALIVTNR---KKRRAERLLRENEEWYRTIFDMSNNAIFIHDPRT 406

Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
           G+I+  N  V  ++GY   ++     ++         ++     I      +      L 
Sbjct: 407 GVIVDVNERVYDMYGYSRSELANADVSLISSGQPSYGISDAKKWIDRAAHGEPQHFEWLA 466

Query: 532 STKEEKLLSLRIIIKKLPFSSCYSLTMH--DISEWKQEKNKLSHAKKIAEK 580
             K+  L  + + ++++       L ++  DI+E KQ++     ++K   +
Sbjct: 467 RRKDGSLFWVDVRMRRVSIGGKDCLLVNSSDITERKQQEEVSHDSEKRLLQ 517



 Score = 74.3 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 42/406 (10%), Positives = 97/406 (23%), Gaps = 51/406 (12%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           I+  G +   +  + +  G  +  MIG    + S  ++      + DL+           
Sbjct: 529 INQQGRVIAWNRSMEELTGVASENMIGKGDYEYSIPIYGSRRPVLVDLVFMSEEERKGNK 588

Query: 149 LW----------------PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192
            +                 + G    +       P++       G      V        
Sbjct: 589 HYSSIKKVGDCLYAEGDSLVRGEKRSLW--AITRPLFDSTGNAVGA--IESVRDVTERKQ 644

Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY-----Y 247
            + L  + +K+   + E     + +   +  I +       +   +K   L E       
Sbjct: 645 AKDLIVKANKQLEDIIEFLPDATLIVNSERKIIAWNHAMEEMTGVSKTEVLGEEHSVTTI 704

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG--------------TLQ 293
                  +     +L   E  L     F         +                    + 
Sbjct: 705 PFYGYRRQYIIDYILDQNEELLSNYSWFDHRGNTYNAEAFAPALYGGKGAHIWVAASPMY 764

Query: 294 NNSKESFEYLSHRNHPS----LSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSF 348
           ++       +      +            E      ++      +     G L   +PS 
Sbjct: 765 DDQGNMIAVIESVRDITDRRRAEEALRRSEANYRMVIENIQDVLYRGDAEGRLIMVSPSA 824

Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
           L L    S+DD        T    P+       +   L R           L     +  
Sbjct: 825 LKLLGCGSLDDFLGKSIADTFYFQPEK----RSEFFELIRQHGKVTNYEVELK---KHDG 877

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
             + +        ++        G+  +  + +  +++ +    QL
Sbjct: 878 TPVMVETSSNAYYDENGNFAGIEGLFRDITERKKGEQERKKLEEQL 923



 Score = 58.1 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 50/141 (35%), Gaps = 7/141 (4%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYA-FKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144
            +  DA G L  +S    K +G  +    +G  + D +     +  +   +L+++     
Sbjct: 808 LYRGDAEGRLIMVSPSALKLLGCGSLDDFLGKSIAD-TFYFQPEKRSEFFELIRQHGKVT 866

Query: 145 GKTTLWPI-EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                    +GT   V ++ ++   Y  N  F+G  G  +              K+L+++
Sbjct: 867 NYEVELKKHDGTP--VMVETSSNAYYDENGNFAGIEG--LFRDITERKKGEQERKKLEEQ 922

Query: 204 FSHLHEIKKGHSSVEKEKYDI 224
                +++   +      +D 
Sbjct: 923 LIQAQKLEAIGTLAAGIAHDF 943


>gi|302343682|ref|YP_003808211.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM
           2075]
 gi|301640295|gb|ADK85617.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM
           2075]
          Length = 934

 Score =  317 bits (812), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 102/644 (15%), Positives = 198/644 (30%), Gaps = 54/644 (8%)

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
             F  L                            +           A             
Sbjct: 183 GSFIPLAATTSLGFIALGAGCAAACGPESAALRPLVGHSPRAVMLRAFLPLTTTIILLHG 242

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
           L ++              +           +         +       SL    ++    
Sbjct: 243 LAAKSLHGAGVSRALVSAVLAVVFTAVTAVVVLRLARRIGHTIEATQESLRESEEKFARA 302

Query: 322 TPE-----TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
                    +   P    +        AN +FL     ++ + +            P   
Sbjct: 303 FAASPALMVLSSFPEGIMID-------ANAAFLDFVGCRAGEVLGRRSTELGFWAEPGQR 355

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
                      R     +A  A+   ++         T +   +  +         +  +
Sbjct: 356 RAVVEALREGGRVSGVDVAIRAKSGEVK---------TILFSAERLRINGRDCMLTVAVD 406

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
               R  +  +     +  ++ E+ +DG+A+ +  G ++  N +   + GYP E++LR  
Sbjct: 407 VNAQRQAEAAIRASEAKYRTLFESMTDGVAVTDMTGRLIDFNESFRAMVGYPAEELLRLR 466

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--- 553
           +     +    +    L   +       +        K+  L  + + +  +  ++    
Sbjct: 467 YHDLTPERWREMDRQILEGHILPRGHSDV-YEKQYRRKDGSLFPVELRVFMIKDAAGAPT 525

Query: 554 -YSLTMHDISEWKQEKNKLSHAKKIAEKES--SHKSDFLARVSHEIRTPLTAIIGFSEVI 610
                + D++E K+  ++    ++   +             ++H+    L AI+G  E+ 
Sbjct: 526 AMWALVRDVTERKKADDQKKALEEQLRQAQKMEAIGVLAGGIAHDFNNILGAILGSVELA 585

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
            +Q      +         I  S +   ++V  +L  S+    K+   F+ + L E V  
Sbjct: 586 MDQAHDHGLDAAD---LRQIIASVDRAKELVRQILTFSR----KVAPQFKAMDLSEEVER 638

Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
            I++++     K I I TS A  +P ILAD   + Q+ LN+ SNA H  P GG+I I T 
Sbjct: 639 TIAVLKRTLP-KMIEIETSLARGLPPILADANQIGQVLLNLASNAAHAMPDGGKINIVTE 697

Query: 731 HT--------------SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
                           S E V+LR  D G GM    + K   PF          G+GTGL
Sbjct: 698 LAVVSDGFCTGCGQPFSGEYVLLRFTDQGQGMDRETIAKMFDPFFTTK----EVGKGTGL 753

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820
           GL      + ++ G     S   +G+   I  P +    P + +
Sbjct: 754 GLSTVFGTIKSHGGHVTCHSELGRGSSFTIYLPPHQGPLPAEQV 797



 Score = 68.1 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 29/328 (8%), Positives = 87/328 (26%), Gaps = 13/328 (3%)

Query: 69  DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID 128
           +SE  F             +    G + + +      +G  A +++G R  ++       
Sbjct: 294 ESEEKFARAFAASPALMVLSSFPEGIMIDANAAFLDFVGCRAGEVLGRRSTELGFWAEPG 353

Query: 129 PNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNR 188
               + + L+      G       + +     I  +A  +    R+        +     
Sbjct: 354 QRRAVVEALREGGRVSGVDVAIRAK-SGEVKTILFSAERLRINGRDCM----LTVAVDVN 408

Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEY 246
                 A  +  + K+  L E      +V      +         +      ++  L  +
Sbjct: 409 AQRQAEAAIRASEAKYRTLFESMTDGVAVTDMTGRLIDFNESFRAMVGYPAEELLRLRYH 468

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPE---QEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303
               +   + ++  L             ++ +   + + +  +     +++ +       
Sbjct: 469 DLTPERWREMDRQILEGHILPRGHSDVYEKQYRRKDGSLFPVELRVFMIKDAAGAPTAMW 528

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCP--IPFFVYSHGNLFYANPSFLLLTKYKSVD-DI 360
           +     +     D+ +    E + +        V + G     N     +     +  D 
Sbjct: 529 ALVRDVTERKKADDQKKALEEQLRQAQKMEAIGVLAGGIAHDFNNILGAILGSVELAMDQ 588

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYR 388
               GL        ++  +  K ++   
Sbjct: 589 AHDHGLDAADLRQIIASVDRAKELVRQI 616


>gi|84393237|ref|ZP_00991999.1| sensor histidine kinase FexB [Vibrio splendidus 12B01]
 gi|84376143|gb|EAP93029.1| sensor histidine kinase FexB [Vibrio splendidus 12B01]
          Length = 813

 Score =  317 bits (812), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 86/392 (21%), Positives = 169/392 (43%), Gaps = 19/392 (4%)

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
            +E E       + ++      L S ++A+ D I   N +G+    NRAV +L G   +D
Sbjct: 135 DLENEVFQRERTQLELAERTALLRSFIDASPDLIYYRNEDGVFSGCNRAVEELTGKTEKD 194

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
           ++         +     +     ++ + +   T ++        +    LR +       
Sbjct: 195 LVGLTPWDVYSKEIAQQVVETDKKVFADNQALTYDQWLEYPDGRKSYFELRKVPFYSKEG 254

Query: 552 S--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                     DI+E K+ +  L       EK S  K+ F++ +SHE+RTPL  IIG S +
Sbjct: 255 RHLGLVGFGRDITERKEHQESL-------EKASRDKTTFISTISHELRTPLNGIIGLSRM 307

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           + + +          +    I  S   + +I ND++D+ K +  K+ L   P++ ++ V 
Sbjct: 308 LLDSQLTT----EQRKQMQTIKVSAVTLGNIFNDIIDMDKFDRRKLELFPTPLNFEDFVV 363

Query: 670 EAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQI-II 727
           E  S+  L A +K +       +++P  +  D   ++Q+  N++SNA+ FT  GG +  +
Sbjct: 364 EIESISALMAEQKGLRFDLERLSDLPAAVEVDGTRLRQVLWNLVSNAMKFTKDGGVVMTV 423

Query: 728 STTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGEGTGLGLPLAKAMV 785
           S     +   + + V DTG+G+   E+EK    + Q+ +        GTG+GL +++ ++
Sbjct: 424 SAEIDGDFANITMEVEDTGIGIPESEIEKIFAMYYQVKSGTDNLHAVGTGIGLAVSQQLI 483

Query: 786 DANMGKFYIFSTPAKGTLIEIIF--PLYDTSH 815
           +   G   + S    G+   +    P+   + 
Sbjct: 484 NMMDGHIEVTSEEGFGSTFTVSIRVPVNHDTQ 515



 Score = 43.5 bits (101), Expect = 0.16,   Method: Composition-based stats.
 Identities = 16/127 (12%), Positives = 33/127 (25%), Gaps = 5/127 (3%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTWYGKTTLW 150
            G     +  + +  G     ++G+   DV               +            L 
Sbjct: 174 DGVFSGCNRAVEELTGKTEKDLVGLTPWDVYSKEIAQQVVETDKKVFADNQALTYDQWLE 233

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
             +G   Y   +L  +P YS+     G  GFG         + +   ++  +  +     
Sbjct: 234 YPDGRKSYF--ELRKVPFYSKEGRHLGLVGFG--RDITERKEHQESLEKASRDKTTFIST 289

Query: 211 KKGHSSV 217
                  
Sbjct: 290 ISHELRT 296


>gi|288942322|ref|YP_003444562.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
 gi|288897694|gb|ADC63530.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
          Length = 1320

 Score =  317 bits (812), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 116/802 (14%), Positives = 238/802 (29%), Gaps = 90/802 (11%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL-HIDPNNHIGDLLKRQNTWYGKT 147
           +D HG +   +    +             L  +         ++ +            + 
Sbjct: 92  VDRHGLILMANHAGDRLFVLREKHKRQHYLPRLVARESDGVLDDTLQRAWDDGEAHCPEI 151

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI---VHVNRVDNDPRALGKRLDKKF 204
                +       + +  +P    ++         +   +      +   A  +  + ++
Sbjct: 152 RFLTTDAGQFTGELHVVRVPAEDDDQHHLVCSIVDLTERLRHESEIHAAYARLRDSETRY 211

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQS---------PPPHLRMKNKVSSLTEYYAHKDDVLK 255
             L +                             P   +     +  L         +  
Sbjct: 212 RMLADYSADWDYWLGSDRRYLYVSPACEYVCGYPPDAFMDDPRLMDRLIHPDDQPLWLEH 271

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
             +    T +   +  Q      + +Q   +     + +       +       +     
Sbjct: 272 KHEISQSTDDAPHVRLQLRLRRPDGSQRWIEHVCRPVYDVDGTHQGWRGVNRDITHRKQN 331

Query: 316 DEGENLTPETVDKC-PIPFFVYSHGNLFYA-----------------------NPSFLLL 351
           +   +L     +    +P        + +                        N   + L
Sbjct: 332 ELLMDLQKRRAEALLELPQIADDLDEIGFMQHGLALAESLTGSLMGFIHLVNSNQETIEL 391

Query: 352 --TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
                 +V+D       + +  A   +   A               A A    +  +   
Sbjct: 392 VAWSQATVEDSGCQLPPNAVHYAISQAGVWADALRRRRPITCNDYPALAGKCGLPPDHAP 451

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPE------------------DVDTRINKRKMEIEV 451
                 IP  +               +                   V  R  ++ + +  
Sbjct: 452 LQRFLTIPVIEGGLVRMLAGVGNKASDYSELDVESVQLIANAIWRTVRQRRAEQALRLNE 511

Query: 452 MQLCSILEATSDGIAIINR----EGIILSTNRAVSKLFGYPVEDILRK-PFTVFLEQNTP 506
            +   +    SD +            +   N AV  + G+  E IL    +   +     
Sbjct: 512 SRFRRLSMLMSDIVYSCIEIEPERYKLDWLNGAVETITGHTREAILAMGTWRRLVVLEDR 571

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS---SCYSLTMHDISE 563
           S+ + +   +    +            ++     + II + L            + DI E
Sbjct: 572 SLFDRHQAGLKEEAVSSC---QLRLRRRDGSSAWVEIINQCLTDECGGRRLYGGIKDIGE 628

Query: 564 WKQEKNKLSHAKK--------------IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
            K  + +L    +               AE  +  KS FLA +SHEIRTP+  +IG + +
Sbjct: 629 RKLAEQQLQQYTRRMEIQNQELDRALAQAEASTQAKSQFLANMSHEIRTPMNGVIGITGL 688

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           + +       +P     A  +  SG  +L ++ND+LD SKIE+GK+ L      L   + 
Sbjct: 689 LLDTDL----DPEQRRLAEIVRDSGENLLALINDILDFSKIEAGKLELEHLEFDLRLLIE 744

Query: 670 EAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG---QI 725
           E + ++   A+EK + +    A  +P  +  D R ++Q+ +N++ NAI FT  G    Q+
Sbjct: 745 EVLEMMAFNAHEKDLELTYRIAPQVPTAVRGDPRYLRQVIVNLMGNAIKFTERGEVGLQL 804

Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
            +         +   V D+G+G+   +L K    F Q+ +S   R  GTGLGL +AK + 
Sbjct: 805 ALERAEAGRALIRFEVHDSGIGIPEDQLGKLFTAFNQVDSSTTRRFGGTGLGLVIAKQLA 864

Query: 786 DANMGKFYIFSTPAKGTLIEII 807
               G   + S P +G+     
Sbjct: 865 QLMNGDIGLESRPGQGSRFWFT 886



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/204 (13%), Positives = 71/204 (34%), Gaps = 7/204 (3%)

Query: 396 ASARLHTIQWNRENSLAMTFIPFEKAN----QFPENMPQNGIEPEDVDTRINKRKMEIEV 451
             AR        +   A   +   + +         + Q  +E ++++ R  +  +E   
Sbjct: 16  VRARARQALDRGDLEWAERRLARGEIDLPELTENLLIYQAELELQNIELRDTQAAVERIA 75

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
            +  ++       I +++R G+IL  N A  +LF    +   +      + + +  V++ 
Sbjct: 76  NRYTALFYGVPQPILVVDRHGLILMANHAGDRLFVLREKHKRQHYLPRLVARESDGVLDD 135

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKN 569
            L            E   L +   +    L ++              ++ D++E  + ++
Sbjct: 136 TLQRAWDDGEAHCPEIRFLTTDAGQFTGELHVVRVPAEDDDQHHLVCSIVDLTERLRHES 195

Query: 570 KLSHAKKIAEKESSHKSDFLARVS 593
           ++  A     ++S  +   LA  S
Sbjct: 196 EIHAAYARL-RDSETRYRMLADYS 218


>gi|307704959|ref|ZP_07641847.1| two-component sensor histidine kinase [Streptococcus mitis SK597]
 gi|307621469|gb|EFO00518.1| two-component sensor histidine kinase [Streptococcus mitis SK597]
          Length = 449

 Score =  317 bits (812), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 90/376 (23%), Positives = 168/376 (44%), Gaps = 33/376 (8%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           R+ +  +E E  +L SIL   +DG+   NR G I   N    K  G   E++L K     
Sbjct: 83  RLTQENLEQESKRLHSILSYMTDGVLATNRRGKITMINDMAKKQLGVQKEEVLNKSILEL 142

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SL 556
           L+      +   +T++         E +        + LSLR+    +   S +      
Sbjct: 143 LKIEDEYELRDLITQVP--------ELMIDSQDANGEYLSLRVRFALVRRESGFISGLVA 194

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            +HD +E ++E+ +                 F++ VSHE+RTPLT++  + E +     G
Sbjct: 195 VLHDTTEQEKEERERRL--------------FVSNVSHELRTPLTSVKSYLEAL---DEG 237

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV- 675
            L  P   ++        N ++ +V DLL +S+I++   +L  E ++    ++  ++   
Sbjct: 238 ALSEPVAPDFIKVSLDETNRMMRMVTDLLHLSRIDNATSHLDVELINFTAFITFILNRFD 297

Query: 676 --QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
             +    EK+  +   +      I  D   + Q+  NIL+NAI ++P GG+I ++   T 
Sbjct: 298 QIRGQDEEKKYELVRDYPITSVWIEIDTDKMTQVIDNILNNAIKYSPDGGKITVTMKTTD 357

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
           ++ + L + D G+G+   +L +    F ++  ++     GTGLGL +AK ++  + G  +
Sbjct: 358 DQMI-LSISDQGLGIPKQDLPRIFDRFYRVDRARSRAQGGTGLGLAIAKEIIKQHKGFIW 416

Query: 794 IFSTPAKGTLIEIIFP 809
             S   KG+   I+ P
Sbjct: 417 AKSEYGKGSTFTIVLP 432


>gi|317494012|ref|ZP_07952428.1| hsp90-like protein [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917785|gb|EFV39128.1| hsp90-like protein [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 780

 Score =  317 bits (812), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 87/412 (21%), Positives = 179/412 (43%), Gaps = 21/412 (5%)

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
           I   +  +       + ++ E       + ++E +   L S L+A+ D +   N      
Sbjct: 119 IAEREKAEDARLQVLDTLQHEIDQREQAQIELEQQSALLRSFLDASPDLVYYRNENEEFS 178

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
             NRA+  L G   + ++        +++    +     ++   ++  T E+  +     
Sbjct: 179 GCNRAMELLTGKSEKQLIGLKPEDVYDEDIAKKVIETDEKVFRHNVSLTYEQWLVYPDGR 238

Query: 536 EKLLSLRIII--KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
           +    LR +    ++           DI+E K+ ++ L +        S  K+ F++ +S
Sbjct: 239 KACFELRKVPFYDRVGKRHGLMGFGRDITERKRYQDALEN-------ASRDKTTFISTIS 291

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HE+RTPL  I+G S ++ +       N   + Y   I  S   + +I ND++++ K+E  
Sbjct: 292 HELRTPLNGIVGLSRILLDTEL----NQEQLNYLKTIHVSAITLGNIFNDIIEMDKLERR 347

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNIL 712
           K+ L  +P+     +++  +L  L    K++        N+P  ILAD   ++QI  N++
Sbjct: 348 KVQLDNQPIDFTGFLTDLENLSGLLVQPKKLDFTLEHQPNLPHKILADGTRLRQILWNLI 407

Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-G 771
            NA+ FT  GG + +     +  ++   V+D+G+G+   E +K    + Q+ +    +  
Sbjct: 408 GNAVKFTQKGG-VNVKVWRETGGKLFFEVKDSGIGIPQDEQDKIFAMYYQVKDQNGGKPA 466

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF--PLYDTS---HPHD 818
            GTG+GL ++K +     G   + STP +G+   +    P+ + +    P D
Sbjct: 467 TGTGIGLAVSKRLAQNMGGDIVVRSTPGEGSCFTLSIDAPVVEEALSPQPED 518



 Score = 41.9 bits (97), Expect = 0.42,   Method: Composition-based stats.
 Identities = 15/179 (8%), Positives = 41/179 (22%), Gaps = 10/179 (5%)

Query: 287 QYFGTLQNNSKESFEYLSHRNHPSLSA--YFDEGENLTPETVDKCPIPFF-VYSHGNLFY 343
                 ++   +  + L H       A    ++   L    +D  P   +    +     
Sbjct: 120 AEREKAEDARLQVLDTLQHEIDQREQAQIELEQQSALLRSFLDASPDLVYYRNENEEFSG 179

Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403
            N +  LLT       I +      + D             +          +      +
Sbjct: 180 CNRAMELLTGKSEKQLIGLKP--EDVYDEDIAKKVIETDEKVFRH-----NVSLTYEQWL 232

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
            +                ++  +     G   +  + +  +  +E       + +   S
Sbjct: 233 VYPDGRKACFELRKVPFYDRVGKRHGLMGFGRDITERKRYQDALENASRDKTTFISTIS 291


>gi|254828075|ref|ZP_05232762.1| two-component sensor histidine kinase [Listeria monocytogenes FSL
           N3-165]
 gi|258600459|gb|EEW13784.1| two-component sensor histidine kinase [Listeria monocytogenes FSL
           N3-165]
          Length = 591

 Score =  317 bits (812), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 84/367 (22%), Positives = 173/367 (47%), Gaps = 27/367 (7%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           +++    +L +I++    G+ +IN +  ++ TNR + ++ G    +I  KPF   ++   
Sbjct: 246 EIKQNEQRLNAIVQNLVSGVMLINVDKQVIMTNRTMYQILG--ETEITGKPFYEVIKSF- 302

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
              ++  +         Q  E I     +     S+  I+ +    +   L +HDI++ +
Sbjct: 303 --ALSQLIEGTFETKTIQQKEIILYFPREMILDASVSPILGENGEITGIILLLHDITQIR 360

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY-I 624
             +N               +S+F+  VSHE++TP+TA+ GF+E + +   G + +     
Sbjct: 361 HLENV--------------RSEFVTNVSHELKTPVTALKGFAETLLD---GAMYDEMLLK 403

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           ++   I    + +  ++ D+L +S+IE   +  + E V +DE + ++   +   A EK I
Sbjct: 404 KFLTIIKEESDRLHRLIMDILALSRIEQNPVPENVELVEVDEVIEQSARTIFEMATEKNI 463

Query: 685 LIRTSFANNIPRI--LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
            +       IP +    D   ++QI +N+LSNAI++TP  G++ +        E I+ V 
Sbjct: 464 QVII-PEKTIPSVTIETDRDKLQQILINLLSNAINYTPVDGKVEVKL-IEQEAEAIIEVT 521

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G+G+   ++++  + F ++  ++     GTGLGL + K +V+   G+  + S    G+
Sbjct: 522 DNGIGIPAKDIDRVFERFYRVDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGS 581

Query: 803 LIEIIFP 809
              +  P
Sbjct: 582 TFRVTLP 588


>gi|15599307|ref|NP_252801.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PAO1]
 gi|9950314|gb|AAG07499.1|AE004827_8 probable sensor/response regulator hybrid [Pseudomonas aeruginosa
           PAO1]
          Length = 1417

 Score =  317 bits (812), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 111/662 (16%), Positives = 223/662 (33%), Gaps = 48/662 (7%)

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS--LTE 245
           R+     A  +                  ++    D           R +  V    +  
Sbjct: 334 RLRRRREAATQARLAAIVGNSADGIIGVGLDGVISDWNRGAEALFGYREEQAVGRRVVDL 393

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
                 +  + +    +  +E  +         + +          +             
Sbjct: 394 LVPPSKENEELDILARIARKEQVVSFDTVRRHQDGHLLDVAVTVSPILGPDGGVVGASKT 453

Query: 306 RNHPSLSAYFDEGENLTPETVDK-------------------CPIP-----FFVYSHGNL 341
               S     +         ++                               +   G +
Sbjct: 454 VRDISAKKAAEARIRELNTGLEHQIAERTAELRRLNVLLGSVLQAASEVSIITLDRDGII 513

Query: 342 FYANPSFLLLTKYKSVDDIEIAGGL----STLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397
              N     +  Y++ + +  A          L A           V++ R+++    A 
Sbjct: 514 SGFNLGAERMLGYRADEVVGKASPTLLHSERELLARGQELGEEGFRVLVARAEQEG--AE 571

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
            R  T      + L++T       ++        GI  +  + R  +R+M     QL   
Sbjct: 572 TREWTYLRKDGSPLSVTLSVTVLRDEAGAINGYLGIAVDVTEWRNAEREMAAARDQLQMA 631

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFG----YPVEDILRKPFTVFLEQNTPSVMNHYL 513
            +    GI   N     L  N  + +++G         ++ + +   L           L
Sbjct: 632 ADVARLGIWRWNLADDSLQWNERMCEMYGQPLALRDGGLVYEHWRSRLHPEDLERTEASL 691

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKNKL 571
              +       +    +      + +     +++    +    +    DI+  +Q + +L
Sbjct: 692 RAAVEGRGNYDVIFRVVLPDGGIRFIQAGAQVERDADGNPLQVTGINIDITSDQQLQARL 751

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
             AK+ A+  S+ KS FLA +SHEIRTP+ A++G  ++ +        N R  +Y +   
Sbjct: 752 REAKEQADAASAAKSSFLANMSHEIRTPMNAVLGMLQLARQTDL----NERQRDYLDKAS 807

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
            +   +L ++ND+LD SKIE+GK+ L   P  L+  + +   ++     +K + +     
Sbjct: 808 SAATSLLGLLNDILDYSKIEAGKLVLEMLPFELEPLMQDLAVVLSGNQGDKDVEVIFDID 867

Query: 692 NNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH--TSNEEVILRV--RDTGV 746
             +P  ++ D   ++QI +N+  NA+ FT  G  +++S          V LRV   DTG+
Sbjct: 868 PELPSAVVGDRLRLQQILINLAGNALKFTARG-HVLVSLRRLAHDAHLVRLRVLVADTGI 926

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G++  + ++  + F Q   S   R  GTGLGL + K +VD   G+  + S P  G+    
Sbjct: 927 GISAEQQQRIFEGFTQAEASTSRRFGGTGLGLFICKRLVDLMGGELRVESAPGSGSRFWF 986

Query: 807 IF 808
             
Sbjct: 987 DL 988



 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 69/523 (13%), Positives = 141/523 (26%), Gaps = 61/523 (11%)

Query: 97  EISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTN 156
            ++E+  +       +++   +    ++         G LL        +          
Sbjct: 34  LVNEQQARMALEREAELLAEAVTRRVELYQYGLRGVRGALLTAGEVHIDRELFRR----- 88

Query: 157 LYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSS 216
                          +REF G RGFG +   RV     A   R  +         +  + 
Sbjct: 89  --------YSLTRDIDREFPGARGFGFIR--RVAAADEAGFLRQARADGQPEFRIQQLTP 138

Query: 217 VEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFH 276
            + E+Y I   +    + +      +                   LT   + +       
Sbjct: 139 HDGERYVIQYIEPVARNGQALGLDIASEANRREAARAALETGQVRLTGPITLVQASGLRQ 198

Query: 277 TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY 336
              L                +                 +     LT E +   PI     
Sbjct: 199 QSFLILMPIY----------RSGITPPPGPQRELEGFGWSYAPLLTGEVLAGLPI----- 243

Query: 337 SHGNLFYANPS-FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIA 395
                   N +  L L+                   A +L  +   + +          A
Sbjct: 244 -------DNAAIHLELSDVTGDGAAVPFFVNGAAAPAQRLFGHMLRREIYGRHWQMAFSA 296

Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
               +  +       L +             N    G        R+ +R+      +L 
Sbjct: 297 LPLFVQRLHQPSPRILFLAGSLVSLLLAALVNASALG--------RLRRRREAATQARLA 348

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS-VMNHYLT 514
           +I+  ++DGI  +  +G+I   NR    LFGY  E  + +     L   +        L 
Sbjct: 349 AIVGNSADGIIGVGLDGVISDWNRGAEALFGYREEQAVGRRVVDLLVPPSKENEELDILA 408

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNK 570
            I      Q +   T+   ++  LL + + +  +       +    T+ DIS  K  + +
Sbjct: 409 RIA--RKEQVVSFDTVRRHQDGHLLDVAVTVSPILGPDGGVVGASKTVRDISAKKAAEAR 466

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
           +       E + + ++        E+R  L  ++G      ++
Sbjct: 467 IRELNTGLEHQIAERTA-------ELRR-LNVLLGSVLQAASE 501



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 32/404 (7%), Positives = 93/404 (23%), Gaps = 46/404 (11%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL--HIDPNNHIGDLLKRQNTWYGK 146
           +   G + + +       G    + +G R+ D+        +  + +  + +++      
Sbjct: 361 VGLDGVISDWNRGAEALFGYREEQAVGRRVVDLLVPPSKENEELDILARIARKEQVVSFD 420

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR------- 199
           T     +G  L V + ++  PI   +    G      V          A  +        
Sbjct: 421 TVRRHQDGHLLDVAVTVS--PILGPDGGVVGASK--TVRDISAKKAAEARIRELNTGLEH 476

Query: 200 ---------------LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244
                          L        E+       +                R    V   +
Sbjct: 477 QIAERTAELRRLNVLLGSVLQAASEVSIITLDRDGIISGFNLGAERMLGYRADEVVGKAS 536

Query: 245 EYYAHKDDVLKTEKYPL----------LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294
               H +  L      L             +E +   +  +   + +  +       L++
Sbjct: 537 PTLLHSERELLARGQELGEEGFRVLVARAEQEGAETREWTYLRKDGSPLSVTLSVTVLRD 596

Query: 295 NSKESFEYLSHRNHPSLSAYFDEG----ENLTPETVDKCPIPFFVYS-HGNLFYANPSFL 349
            +     YL      +     +       +      D   +  + ++   +    N    
Sbjct: 597 EAGAINGYLGIAVDVTEWRNAEREMAAARDQLQMAADVARLGIWRWNLADDSLQWNERMC 656

Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
            +        +   G +     +    ++       L  +             +  +   
Sbjct: 657 EMYGQPL--ALRDGGLVYEHWRSRLHPEDLERTEASLRAAVEGRGNYDVIFRVVLPDGG- 713

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
              +      + +     +   GI  +    +  + ++     Q
Sbjct: 714 IRFIQAGAQVERDADGNPLQVTGINIDITSDQQLQARLREAKEQ 757


>gi|71901893|ref|ZP_00683952.1| PAS [Xylella fastidiosa Ann-1]
 gi|71728347|gb|EAO30519.1| PAS [Xylella fastidiosa Ann-1]
          Length = 558

 Score =  317 bits (812), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 99/521 (19%), Positives = 189/521 (36%), Gaps = 44/521 (8%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYS---------HGNLFYANPSFLLLTKYKSVDD 359
           P +    D   ++  E +      F +            G     N SF    +  SV  
Sbjct: 33  PLVLQSLDIPSDVYREMLCNLEAGFCIVEIVLDDGQPVDGIFRLTNASFGRHLRLDSVVG 92

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
             + G +              IK           +   AR    +W         +    
Sbjct: 93  ESVCGIIP-------DDGPEYIKRYGGVALSGQRVHFEARALR-RW---------YSVEV 135

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
                PE      +  +  + +  +R++    ++   + +     + + + +G +   N 
Sbjct: 136 MRVGAPEGRLLGVLFVDITEHKRMERRLAESEVRFNILADGLPMPVWVFDAQGGMRFVNT 195

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
           A  + FG  +       +++ L      +    L+  L    +  L  +      + +  
Sbjct: 196 AYGEFFGVDLSIGTLPEWSMVLHPEDVLIFELKLSAALKT--QSALRALVRARRYDGQWR 253

Query: 540 SLRIIIKKLPFSSCYSLTMH----DISEWKQEKNKLSH-------AKKIAEKESSHKSDF 588
            + +          + + +     D++E  + +            A+  AE  +  K +F
Sbjct: 254 WIEMSATPRYSPDGHFIGLTGSSPDVTERLEIELAREQLLKSERAARNEAENMARLKDEF 313

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
           L+ +SHE+RTPLT I+G+SE++  +      +P Y    + I  S  +   +++D+LD+S
Sbjct: 314 LSTLSHELRTPLTTILGWSELLLQRI--EEQHPCYKG-LSVIASSAKVQKRLISDMLDLS 370

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIA 708
            +  GKM L  E + L E + E I L +     K   +          +L D   ++QI 
Sbjct: 371 SMLLGKMQLEMEVLDLVEQIREVIGLYEQVVESKGQRLLLRAPEMPCLVLGDATRLRQIF 430

Query: 709 LNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
            N+LSNAI FTP+ G I +       +   + V D+G G+    L      F Q   +  
Sbjct: 431 ENLLSNAIKFTPTDGCIDVEID-ADGDSFRVSVTDSGDGIAAEFLPHLFSRFRQADGTTT 489

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIF 808
               G GLGL + +++V+ + G     S    KG +  +  
Sbjct: 490 RCHGGLGLGLAIVQSLVEMHGGYVGATSPGLGKGAMFTVSL 530



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/170 (15%), Positives = 51/170 (30%), Gaps = 6/170 (3%)

Query: 68  LDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI 127
            +SE  F        +   W  DA G ++ ++    +  G             V     +
Sbjct: 164 AESEVRFNILADGLPMP-VWVFDAQGGMRFVNTAYGEFFGVDLSIGTLPEWSMVLHPEDV 222

Query: 128 DP-NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHV 186
                 +   LK Q+           +G   +  I+++A P YS +  F G  G      
Sbjct: 223 LIFELKLSAALKTQSALRALVRARRYDG--QWRWIEMSATPRYSPDGHFIGLTGSSP--D 278

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM 236
                +     ++L K         +  + ++ E     S +   P   +
Sbjct: 279 VTERLEIELAREQLLKSERAARNEAENMARLKDEFLSTLSHELRTPLTTI 328



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/205 (10%), Positives = 56/205 (27%), Gaps = 15/205 (7%)

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL--SHRNHPSLSAYFDEGENLT 322
              +L  Q         +         +          L      H  +     E E   
Sbjct: 111 GGVALSGQRVHFEARALRRWYSVEVMRVGAPEGRLLGVLFVDITEHKRMERRLAESEVRF 170

Query: 323 PETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYK-SVDDIEIAGGLSTLLDAPKLSDNNA 380
               D  P+P +V+   G + + N ++        S+  +     +          ++  
Sbjct: 171 NILADGLPMPVWVFDAQGGMRFVNTAYGEFFGVDLSIGTLPEWSMVLH-------PEDVL 223

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
           I  + L  + +T  A  A +   +++      +      + +     +   G  P+  + 
Sbjct: 224 IFELKLSAALKTQSALRALVRARRYDG-QWRWIEMSATPRYSPDGHFIGLTGSSPDVTER 282

Query: 441 ---RINKRKMEIEVMQLCSILEATS 462
               + + ++        +  E  +
Sbjct: 283 LEIELAREQLLKSERAARNEAENMA 307


>gi|329928573|ref|ZP_08282440.1| signal transduction histidine-protein kinase BarA [Paenibacillus
           sp. HGF5]
 gi|328937689|gb|EGG34098.1| signal transduction histidine-protein kinase BarA [Paenibacillus
           sp. HGF5]
          Length = 559

 Score =  316 bits (811), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 81/259 (31%), Positives = 138/259 (53%), Gaps = 8/259 (3%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E ++   +L  AK+ AE  +  K++FLA +SHEIRTP+  +IG  +++ +          
Sbjct: 147 ELEKINQELVLAKEEAEIAAKAKTEFLAMMSHEIRTPMNGVIGMIDLLMDSEL----QDE 202

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             EYA  I  S + +++I+ND+LD SK+ESGKM L   P  L   V E   L    A++K
Sbjct: 203 QREYATIIRNSADALVNIINDILDFSKMESGKMELEEYPFDLKSCVQEVFGLFSGEASKK 262

Query: 683 RILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEV--I 738
            + +     + IP  +  D+  ++Q+ +N++SNA+ FT  GG  +++S        +   
Sbjct: 263 NLELTYFIEDQIPSMVFGDMGRLRQVLVNLVSNAVKFTNEGGVYLVVSLAKAEENRLTLE 322

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
             V+DTG+G+++ +L++  KPF Q+ +S   R  GTGLGL + K++V    G+  + S  
Sbjct: 323 FTVKDTGIGISSKKLDRLFKPFSQLDSSMTRRYGGTGLGLAICKSLVQMMGGEIEVDSKE 382

Query: 799 AKGTLIEIIFPLYDTSHPH 817
            +G        ++     H
Sbjct: 383 GEGATFVFTICVHTHEEEH 401


>gi|221322739|ref|ZP_03604033.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. SMY]
          Length = 738

 Score =  316 bits (811), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 108/740 (14%), Positives = 243/740 (32%), Gaps = 69/740 (9%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTT 148
           D    + + +E   + +   +  +    + D    +  D  N  +    K+   W     
Sbjct: 48  DNEMRIVQANEATERMLQVDSEDLKKRSVLDFLFSIPKDELNLSVKKFFKKGFLWKEVPI 107

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                 T     I+  A      +        F ++                ++ F  L 
Sbjct: 108 RLDCGATKY---IEFLAKRGIGEDF------FFVVMRDISSKKILEREFSMNEQLFKDLF 158

Query: 209 EIKKGHSSVEKEKYDIFSQQSPP--PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
           +       +  +                   N++S L+ Y        K           
Sbjct: 159 DRAVDGIVLFDKDGGFIDANLSFCKSFEINHNELSHLSLYEFIDSGSRKDFDNIWKALNR 218

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE-YLSHRNHPSLSAYFDEGENLTPET 325
               + E    +        ++  T    S              S+  +  + E    E 
Sbjct: 219 KGKAKGELPVKLRSGVQKLFEFTITSNIISGFYMSIMRDITEKRSMELHLFKSEERFREI 278

Query: 326 VDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD------- 377
            +       ++S  G +  AN S   + +   ++ +        L+D+ +          
Sbjct: 279 FENAMDAIIIWSNDGRIVKANQSACKIFEL-PMNLLLKRKLCDFLVDSQQKYSITKRKYA 337

Query: 378 --NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
                 + ++    +                 ++   +                      
Sbjct: 338 KYGEIREELLFQMGNGQFKELEFTSKRTILENQHLTIL---------------------R 376

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
              D +  ++++    ++   +   + DG  + + +  I+  N   S + G   E+I + 
Sbjct: 377 NVSDRKRMEKELRESELKFRKVFNGSMDGNVLFDNQYRIIDANPLASHILGLSHEEIKQH 436

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555
                +       +     +I   +    ++              L    K+    +   
Sbjct: 437 SLLDIISAYEIENLASPARQINFDE----MDNEIPFLLSSGDNRKLEFSFKRNIIQNMNL 492

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
               D++E K+ + +L  +  +         +  A ++HEIR P+TA+ GF +++K    
Sbjct: 493 AIFKDVTERKELEERLRKSDTLHVV-----GELAAGIAHEIRNPMTALKGFIQLLKGSVE 547

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
           G      Y  Y N I      +  I+ + L ++K ++    + +E   + + + + I L+
Sbjct: 548 G-----DYALYFNVITSELKRIESIITEFLILAKPQA----IMYEEKHVTQIMRDTIDLL 598

Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
              AN   + ++    ++IP I  +   +KQ+ +NIL NAI   P GG I ++      +
Sbjct: 599 NAQANLSNVQMQLDLIDDIPPIYCEPNQLKQVFINILKNAIEVMPDGGNIFVTIKALDQD 658

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            V++ ++D G+GMT  +L++  +PF         +  GTGLGL ++  +++ + G+  + 
Sbjct: 659 HVLISLKDEGIGMTEDKLKRLGEPFYTT------KERGTGLGLMVSYKIIEEHQGEIMVE 712

Query: 796 STPAKGTLIEIIFPLYDTSH 815
           S   KGT+  I  P+   + 
Sbjct: 713 SEEGKGTVFHITLPVRQNAE 732



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 53/145 (36%), Gaps = 3/145 (2%)

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
           +  E    +    +++ E+ Q   I+  T D I I + E  I+  N A  ++     ED+
Sbjct: 12  LREELNRLKEENARLKKELNQHQVIVNNTLDAIFICDNEMRIVQANEATERMLQVDSEDL 71

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
            ++    FL       +N  + +         L K             +  + K+     
Sbjct: 72  KKRSVLDFLFSIPKDELNLSVKKFFKKG---FLWKEVPIRLDCGATKYIEFLAKRGIGED 128

Query: 553 CYSLTMHDISEWKQEKNKLSHAKKI 577
            + + M DIS  K  + + S  +++
Sbjct: 129 FFFVVMRDISSKKILEREFSMNEQL 153


>gi|194292534|ref|YP_002008441.1| two-component sensor response receiver component, histidine kinase
           [Cupriavidus taiwanensis LMG 19424]
 gi|193226438|emb|CAQ72387.1| two-component sensor response receiver component, histidine kinase
           [Cupriavidus taiwanensis LMG 19424]
          Length = 1102

 Score =  316 bits (811), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 122/729 (16%), Positives = 242/729 (33%), Gaps = 68/729 (9%)

Query: 139 RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
           R+        L               AL +       +     G+       +D +   +
Sbjct: 48  REAIDRQGMVLRAQSEALQSTLHRAEALTVR-AQGSLARLSDIGLADDVAAVSDAQWTDR 106

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
              +       +    ++  +    +         +    +V++L         ++    
Sbjct: 107 LQRRGDRPYIALLVPPATASQPGKRLKDLAD---VMTFTFRVNNLQYRDVQNAYLIDLHA 163

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
             L        P +      +  Q   +     L++    +      R HP  +      
Sbjct: 164 DQLYVIPRRLNPARMLLQRDDARQAFLRDTLQRLRSEDMVAR----LRAHPGQAVMLPPA 219

Query: 319 ENLTPETVDKCPIPFFVYSHGNLFYANP-SFLLLTKYKSVDDIEIAGGL----STLLDAP 373
           ++              V   G+        F L         ++    L      +L A 
Sbjct: 220 QDWISGI-RTVTFAILVQDGGDPAAVLAMEFPLSPMLPDGQAMDGDFMLLTDSGMVLSAD 278

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
            +  +    PV    +         R   +++     + +   P +        +   G 
Sbjct: 279 GMPASPLEAPVAAALAADGARPGKVRSSLVRYGLLQHVIVLDYPLDAWGWRTVGVVDLGR 338

Query: 434 EPEDVDT-------------------------------RINKRKMEIEVMQLCSILEATS 462
                                                 +   R+++        ++E   
Sbjct: 339 VWRQFRENTLWMVGLTGSLSLLIFGWIWLIDRRIMRPAQRQSRRLQESDALGRFVIEVAG 398

Query: 463 DGIAIINREGI-ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
            G+ I+ R    +L  N A   L        L +       Q+                 
Sbjct: 399 VGLMIVERNTRQVLLANAAAQSLIDQAAPAGLAQ------LQDACEARLASCDTSPEGPP 452

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAE 579
           +         +    +   L + + ++ +         ++D++E ++ + +L  A + A+
Sbjct: 453 QVLPRFDVDMACANGETRYLEVRLVQITYDVRAALLCALNDVTEARRGEARLREAIRAAD 512

Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639
             +  KS FLA +SHEIRTPL  ++G  E++   R     +PR  +    +  +   ++D
Sbjct: 513 AANRAKSSFLATMSHEIRTPLNGMLGSIELLSLSRL----DPRQRDQLAVMQHASQSLID 568

Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI-PRIL 698
           I+ND+LD SKIE+G+M+L   P  LDE V E        A  KR+ +      ++   ++
Sbjct: 569 IINDVLDFSKIEAGQMSLQPRPCRLDEVVEEVTRNFAAEAARKRLRLLCINDPSLSEPVM 628

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE------VILRVRDTGVGMTNYE 752
           AD   ++QI  N++SNA+ FT  G ++I++     +        V LRV DTG+G+  ++
Sbjct: 629 ADAVKLEQILNNLISNAVKFTEQG-KVIVTARRKRSAHGGGAEGVELRVVDTGIGIAAHD 687

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
             +  +PF Q   S      GTGLGL + + +V+   G+  + S P  G+   +  PL  
Sbjct: 688 QRRLFEPFVQAEQSDTRHYGGTGLGLSICRRLVELMRGEIRVVSEPGLGSCFIVSLPLAS 747

Query: 813 T--SHPHDC 819
              + P + 
Sbjct: 748 AGIAAPAEA 756


>gi|307823178|ref|ZP_07653408.1| multi-sensor signal transduction histidine kinase [Methylobacter
            tundripaludum SV96]
 gi|307735953|gb|EFO06800.1| multi-sensor signal transduction histidine kinase [Methylobacter
            tundripaludum SV96]
          Length = 1161

 Score =  316 bits (811), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 102/745 (13%), Positives = 242/745 (32%), Gaps = 56/745 (7%)

Query: 87   WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL----KRQNT 142
            W +D   +    SEEL   +G      +     +       +    +   +    +    
Sbjct: 432  WQLDMTTHHAVWSEELYHILGLNPELPVP-GYTEHHQFFTPESWERLSAAMLHTQETGGP 490

Query: 143  WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
            +  +  +    GT  +  +      +   +    G  G  +            +      
Sbjct: 491  YELELEMVRAGGT--HGWMLARGEAMRDGSGAIVGLHGVAL--DISERKQAERVL----N 542

Query: 203  KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEKYP 260
            +   + +I      +   + ++         +     +++  +        +  +  K  
Sbjct: 543  QLKAMIDISLDGFWIVDLEGNVLQVNEAYAKISGYSVDELEGMHASQLEAIEESEQIKAH 602

Query: 261  LLTSEESS-LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
            +  +        +      N +  T +     L    +             +       E
Sbjct: 603  MAKAVAMGYEQFETRLLHKNGHTITIEVSATFLPEFQQFCVFCRDITKRKRMEDELKASE 662

Query: 320  NLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS-- 376
                  ++ CP+P  +     N+ + NP+F+    Y   D   +A         P     
Sbjct: 663  LKFRSIIEACPVPMALNDEHLNISFLNPAFVQTFGYSVNDIPTLADWRQKAYPDPDYRHW 722

Query: 377  -DNNAIKPVMLYRSDRTC-IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
             +      +     ++T  +   A +H      +  L                     I 
Sbjct: 723  VETAWQAVLEKANQEQTECLPMEADIHCKNNRIKTVLLTAATIHHSFTGE-----HLVIL 777

Query: 435  PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
             +    +  +        +  +I  A+ +GI   +   +I+S N AV  +FGY  ED++ 
Sbjct: 778  YDITPRKQIEA-------KFNAIFAASVEGIITYDMSDVIVSANAAVEAIFGYKPEDLVG 830

Query: 495  KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK--LPFSS 552
                  +   +P  M+   +   +  + Q  E    G  K+   + L + I +  +    
Sbjct: 831  CNINKLM-PASPKAMSDCDSSQAAESIGQIQEIE--GIHKDGSAVPLDLSIAEFSIENEH 887

Query: 553  CYSLTMHDISEWKQEKNKLSHAKKIAEKESSH--KSDFLARVSHEIRTPLTAIIGFSEV- 609
             ++  + D+S  K  + +           +      +  + ++HE+  PL AI  +++V 
Sbjct: 888  YFTHIVRDVSLRKHREQQDKEHLDELAHVTRLGLMGEMASGIAHEVNQPLAAISSYTQVS 947

Query: 610  IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
            +     G     +  E      +       I++ + +  K  + +         L+  + 
Sbjct: 948  LNLINVGHPDLAKLAEILYKTQQQALRAGRIIHRMREFVKSHAKQ----RSTADLNTLIH 1003

Query: 670  EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF-----TPSGGQ 724
            +A+ L      +  I +     NN+P I  D   ++Q+ +N++ N++       +     
Sbjct: 1004 DAVGLCIDELKQNNIRLTFELENNLPSISVDQIQIEQVLINLIRNSVEALQNLSSERQRH 1063

Query: 725  IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
            + I +    N  + +RV+D G G+   + ++ + PF    +       G G+GL +++++
Sbjct: 1064 LTIHSHLVPNNVIRVRVKDNGPGLDEDQKQQILTPFYTTKSD------GMGMGLSISRSL 1117

Query: 785  VDANMGKFYIFSTPAKGTLIEIIFP 809
            ++A+ G  +  S P KGT      P
Sbjct: 1118 IEAHEGTLHFNSKPGKGTTFYFTLP 1142



 Score =  138 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 46/518 (8%), Positives = 145/518 (27%), Gaps = 43/518 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNTWYGK 146
           +D HG +   + +     G  + + +G  + ++         +   +   L    +    
Sbjct: 175 MDHHGNVTGWNAQAEHIFGYSSEQALGREMAELIVPPAYREKHRQGLSRFLATGTSNIIG 234

Query: 147 TTL----WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
           T L       + +   + + + AL      ++ + +     +             +  + 
Sbjct: 235 TRLEITGLRADASEFPMELTIGAL------KQKNNYFFSSYIRDISERRIIEDALRESEY 288

Query: 203 KFSHLHEIKKGHSSVEK-------EKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255
           ++    E                              +  +      L   +      + 
Sbjct: 289 RWKFAIEGSGDGVWDRDIQTNKTKYSSRWKEMLGYAENDILPAHQEWLNRIHPDDQSYVA 348

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL-QNNSKESFEYLSHRNHPSLSAY 314
                 LT + +    +      + +          + ++   +    +      S    
Sbjct: 349 GVLQACLTGKTAIYVSEHRLRCKDGSYKWILARGTVVSRSEDGKPLRMIGTHTDISERKQ 408

Query: 315 FDEGENLTPETVDKCPIPFFVYSHG--------NLFYANPSFLLLTKYKSVDDIEIAGGL 366
            +E    + +   +      +   G        +    +     +        +      
Sbjct: 409 AEEALRQSRK---ELQEAQRIAHMGNWQLDMTTHHAVWSEELYHILGLNPELPVPGYTEH 465

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
                       +A     +  +  T       L  ++        M        +    
Sbjct: 466 HQFFTPESWERLSAA----MLHTQETGGPYELELEMVR-AGGTHGWMLARGEAMRDGSGA 520

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
            +  +G+  +  + +  +R +     QL ++++ + DG  I++ EG +L  N A +K+ G
Sbjct: 521 IVGLHGVALDISERKQAERVL----NQLKAMIDISLDGFWIVDLEGNVLQVNEAYAKISG 576

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
           Y V+++     +          +  ++ + +++   Q     T    K    +++ +   
Sbjct: 577 YSVDELEGMHASQLEAIEESEQIKAHMAKAVAMGYEQ---FETRLLHKNGHTITIEVSAT 633

Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
            LP    + +   DI++ K+ +++L  ++         
Sbjct: 634 FLPEFQQFCVFCRDITKRKRMEDELKASELKFRSIIEA 671



 Score =  128 bits (322), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 56/511 (10%), Positives = 131/511 (25%), Gaps = 44/511 (8%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMR--LCDVSDILHIDPNNHIGDLLKRQNT- 142
            W+ D      + S    + +G     ++       +            +        T 
Sbjct: 301 VWDRDIQTNKTKYSSRWKEMLGYAENDILPAHQEWLNRIHPDDQSYVAGVLQACLTGKTA 360

Query: 143 -WYGKTTLWPIEGTNLYVPIDLAALPI-YSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
            +  +  L   +G+  Y  I      +  S + +    R  G               ++ 
Sbjct: 361 IYVSEHRLRCKDGS--YKWILARGTVVSRSEDGKP--LRMIGTHTDISERKQAEEALRQS 416

Query: 201 DKKFSHL----------HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK 250
            K+               ++   H+   +E Y I       P           T     +
Sbjct: 417 RKELQEAQRIAHMGNWQLDMTTHHAVWSEELYHILGLNPELPVPGYTEHHQFFTPESWER 476

Query: 251 DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310
                                + +                 +++ S             S
Sbjct: 477 LSAAMLHTQE----TGGPYELELEMVRAGGTHGWMLARGEAMRDGSGAIVGLHGVALDIS 532

Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
                +   N     +D     F++    GN+   N ++  ++ Y   +       L  +
Sbjct: 533 ERKQAERVLNQLKAMIDISLDGFWIVDLEGNVLQVNEAYAKISGYSVDE-------LEGM 585

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
             +   +   + +                    +  N              A   PE   
Sbjct: 586 HASQLEAIEESEQIKAHMAKAVAMGYEQFETRLLHKNGHTITI-----EVSATFLPEFQQ 640

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
                 +    +  + +++   ++  SI+EA    +A+ +    I   N A  + FGY V
Sbjct: 641 FCVFCRDITKRKRMEDELKASELKFRSIIEACPVPMALNDEHLNISFLNPAFVQTFGYSV 700

Query: 490 ED---ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ-----TLEKITLGSTKEEKLLSL 541
            D   +       + + +    +      +L    ++      +E          K + L
Sbjct: 701 NDIPTLADWRQKAYPDPDYRHWVETAWQAVLEKANQEQTECLPMEADIHCKNNRIKTVLL 760

Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572
                   F+  + + ++DI+  KQ + K +
Sbjct: 761 TAATIHHSFTGEHLVILYDITPRKQIEAKFN 791



 Score = 89.3 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 70/208 (33%), Gaps = 11/208 (5%)

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT-- 440
            + LY  D    A +A +          L ++ IP   +      +     + +  +   
Sbjct: 92  WIPLYWLDGLLKAFTAIISIAT----AVLLLSVIPRALSRPSAAQLQAEIEQRKTAEKAL 147

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           RI    ++  + +   +L++  DGI  ++  G +   N     +FGY  E  L +     
Sbjct: 148 RIANVTLQKNIARTQLLLDSALDGIVSMDHHGNVTGWNAQAEHIFGYSSEQALGREMAEL 207

Query: 501 L-EQNTPSVMNHYLTEILSLDLRQTL--EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT 557
           +            L+  L+      +       G   +     + + I  L   + Y  +
Sbjct: 208 IVPPAYREKHRQGLSRFLATGTSNIIGTRLEITGLRADASEFPMELTIGALKQKNNYFFS 267

Query: 558 --MHDISEWKQEKNKLSHAKKIAEKESS 583
             + DISE +  ++ L  ++   +    
Sbjct: 268 SYIRDISERRIIEDALRESEYRWKFAIE 295



 Score = 83.5 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/402 (8%), Positives = 94/402 (23%), Gaps = 28/402 (6%)

Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP--PHLRMKNKVSSLTEYYAHKDDV 253
           L K + +    L     G  S++                    +  +             
Sbjct: 154 LQKNIARTQLLLDSALDGIVSMDHHGNVTGWNAQAEHIFGYSSEQALGREMAELIVPPAY 213

Query: 254 LKTEKYPLLTSEESSLP------EQEDFHTINLNQYTKKQYFGTLQNNSKESFE--YLSH 305
            +  +  L     +          +      + +++  +   G L+  +   F       
Sbjct: 214 REKHRQGLSRFLATGTSNIIGTRLEITGLRADASEFPMELTIGALKQKNNYFFSSYIRDI 273

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANP-----SFLLLTKYKSVDDI 360
                +     E E      ++      +          N       +  +  Y   D +
Sbjct: 274 SERRIIEDALRESEYRWKFAIEGSGDGVW----DRDIQTNKTKYSSRWKEMLGYAENDIL 329

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ-WNRENSLAMTFIPFE 419
                           D+ +    +L        A     H ++  +      +      
Sbjct: 330 PAHQE----WLNRIHPDDQSYVAGVLQACLTGKTAIYVSEHRLRCKDGSYKWILARGTVV 385

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
             ++  + +   G   +  + +  +  +     +L         G   ++        + 
Sbjct: 386 SRSEDGKPLRMIGTHTDISERKQAEEALRQSRKELQEAQRIAHMGNWQLDMTTHHAVWSE 445

Query: 480 AVSKLFGYPVEDIL--RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
            +  + G   E  +        F    +   ++  +           LE   + +     
Sbjct: 446 ELYHILGLNPELPVPGYTEHHQFFTPESWERLSAAMLHTQETGGPYELELEMVRAGGTHG 505

Query: 538 LLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKI 577
            +  R    +    +         DISE KQ +  L+  K +
Sbjct: 506 WMLARGEAMRDGSGAIVGLHGVALDISERKQAERVLNQLKAM 547


>gi|161830656|ref|YP_001596642.1| PAS/histidine kinase/ATPase domain-containing protein [Coxiella
           burnetii RSA 331]
 gi|161762523|gb|ABX78165.1| PAS domain S-box/His Kinase A (phosphoacceptor) domain/ATPase,
           histidine kinase-, DNA gyrase B-, and HSP90-like
           domain/response regulator receiver domain protein
           [Coxiella burnetii RSA 331]
          Length = 669

 Score =  316 bits (811), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 102/516 (19%), Positives = 211/516 (40%), Gaps = 29/516 (5%)

Query: 321 LTPETVDKCPIPFFVYSHG--NLFYANPSFLLLTKYKSVDDIEIAG-GLSTLLDAPKLSD 377
           L     +     F++ S       Y +P+F  +               ++ ++   +   
Sbjct: 19  LFLNLAETSQDIFWIRSVDFYTHVYVSPAFENIFGISRQTLYANPNKWMNAVIIEDRDRL 78

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
            + I    +            R+     +    +           +  + +   G+  + 
Sbjct: 79  RHLIMEWQVKNKKGAAYTVDYRI----IDAYGEMHWINETSYPVYEDDQCLGYAGVVKDV 134

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREG-IILSTNRAVSKLFGYPVEDILR-- 494
              ++  ++ +  V      +E  S    +    G   +  +    K++G   E + +  
Sbjct: 135 SSEKLRVKEFDNAVHYFRHFVERVSGVFWVKGSRGDKQIYISPTYEKIWGVSCESLYQNP 194

Query: 495 KPFTVFLEQNTP---SVMNHYLTEILSLDLR-QTLEKITLGSTKEEKLLSLRIIIKKLPF 550
           K +  ++         V  ++              E        + ++  ++     +  
Sbjct: 195 KSWIDYVLPEDISNGKVNVNFYETAADQRTPDSKYEFRFRIRRPDGEIRWIKDTYFPIME 254

Query: 551 SS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
           +     ++    D++     + +L  AK+ AE+ +  KSDFLA +SHE+RTPL AI+G S
Sbjct: 255 NGKLVGFAGIAEDVTNDALREKELWEAKEFAEQANRTKSDFLAMMSHELRTPLNAILGMS 314

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
           +++K        +       + I ++G  +L ++NDLLD +K+E+GK++   E + L E 
Sbjct: 315 QILKTHNL----SDEQQGQIDVISQAGQNLLALLNDLLDFAKLEAGKLSFTEETMDLHEL 370

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII 726
           V +    + L A++K I ++  +  NIP +++ D + ++Q+ +N+LSNA+ FT  G  + 
Sbjct: 371 VMKIKGDMLLLAHKKGIQLKFDYPENIPSKVMGDAKRIRQVLVNLLSNALKFTEKG-YVQ 429

Query: 727 ISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
           ++      +     +   V+DTG+GM   +L      F QI +  Q + +G GLGL + K
Sbjct: 430 LTANCLKKDHKKMTLCFTVKDTGIGMEKTKLSSIFNRFQQINSVYQRKYDGVGLGLSIVK 489

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFP--LYDTSHP 816
            +++   G   + S P  G+    I P  L   S+P
Sbjct: 490 ELLEKMGGTISVTSEPGVGSEFTCIIPFRLQADSNP 525


>gi|164685702|ref|ZP_01946761.2| PAS domain S-box/His Kinase A (phosphoacceptor) domain/ATPase,
           histidine kinase-, DNA gyrase B-, and HSP90-like
           domain/response regulator receiver domain protein
           [Coxiella burnetii 'MSU Goat Q177']
 gi|164601209|gb|EAX32628.2| PAS domain S-box/His Kinase A (phosphoacceptor) domain/ATPase,
           histidine kinase-, DNA gyrase B-, and HSP90-like
           domain/response regulator receiver domain protein
           [Coxiella burnetii 'MSU Goat Q177']
          Length = 669

 Score =  316 bits (811), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 102/516 (19%), Positives = 211/516 (40%), Gaps = 29/516 (5%)

Query: 321 LTPETVDKCPIPFFVYSHG--NLFYANPSFLLLTKYKSVDDIEIAG-GLSTLLDAPKLSD 377
           L     +     F++ S       Y +P+F  +               ++ ++   +   
Sbjct: 19  LFLNLAETSQDIFWIRSVDFYTHVYVSPAFENIFGISRQTLYANPNKWMNAVIIEDRDRL 78

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
            + I    +            R+     +    +           +  + +   G+  + 
Sbjct: 79  RHLIMEWQVKNKKGAAYTVDYRI----IDAYGEMHWINETSYPVYEDDQCLGYAGVVKDV 134

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREG-IILSTNRAVSKLFGYPVEDILR-- 494
              ++  ++ +  V      +E  S    +    G   +  +    K++G   E + +  
Sbjct: 135 SSEKLRVKEFDNAVHYFRHFVERVSGVFWVKGSRGDKQIYISPTYEKIWGVSCESLYQNP 194

Query: 495 KPFTVFLEQNTP---SVMNHYLTEILSLDLR-QTLEKITLGSTKEEKLLSLRIIIKKLPF 550
           K +  ++         V  ++              E        + ++  ++     +  
Sbjct: 195 KSWIDYVLPEDISNGKVNVNFYETAADQRTPDSKYEFRFRIRRPDGEIRWIKDTYFPIME 254

Query: 551 SS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
           +     ++    D++     + +L  AK+ AE+ +  KSDFLA +SHE+RTPL AI+G S
Sbjct: 255 NGKLVGFAGIAEDVTNDALREKELWEAKEFAEQANRTKSDFLAMMSHELRTPLNAILGMS 314

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
           +++K        +       + I ++G  +L ++NDLLD +K+E+GK++   E + L E 
Sbjct: 315 QILKTHNL----SDEQQGQIDVISQAGQNLLALLNDLLDFAKLEAGKLSFTEETMDLHEL 370

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII 726
           V +    + L A++K I ++  +  NIP +++ D + ++Q+ +N+LSNA+ FT  G  + 
Sbjct: 371 VMKIKGDMLLLAHKKGIQLKFDYPENIPSKVMGDAKRIRQVLVNLLSNALKFTEKG-YVQ 429

Query: 727 ISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
           ++      +     +   V+DTG+GM   +L      F QI +  Q + +G GLGL + K
Sbjct: 430 LTANCLKKDHKKMTLCFTVKDTGIGMEKTKLSSIFNRFQQINSVYQRKYDGVGLGLSIVK 489

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFP--LYDTSHP 816
            +++   G   + S P  G+    I P  L   S+P
Sbjct: 490 ELLEKMGGTISVTSEPGVGSEFTCIIPFRLQADSNP 525


>gi|163849887|ref|YP_001637930.1| PAS sensor protein [Methylobacterium extorquens PA1]
 gi|163661492|gb|ABY28859.1| PAS sensor protein [Methylobacterium extorquens PA1]
          Length = 1225

 Score =  316 bits (811), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 114/798 (14%), Positives = 235/798 (29%), Gaps = 100/798 (12%)

Query: 86   TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWY 144
             W+    GY    +E      G  A    G     +      +         L     + 
Sbjct: 320  IWSTRPDGYHDFYNERWYAFTGVPAGTTDGEAWNGMFHPDDRERAWAAWQHALATGENYQ 379

Query: 145  GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
             +  L    G  LY  +   A P+   +      R FG                 L    
Sbjct: 380  IEYRLRHRSG--LYRWVLGRAQPVRDPDGRIV--RWFGTCTDIHDRKLAEERQAFLLGLN 435

Query: 205  SHLHEI---------------------KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL 243
              L E                      + G+  +++    +  ++       + +   + 
Sbjct: 436  DRLREADEPQAVTLAAAATLGAHIGVARAGYGEIDETGEIVRVERDWTRDPSVPSLAGAS 495

Query: 244  TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYT---KKQYFGTLQNNSKESF 300
                     V+   +  L    +    +    H       +   +      L    +   
Sbjct: 496  RILDGFGPAVIAELRAGLTLVVDDCYADPRAGHDYAATWDSIGCRSLVVVPLIREGRLRA 555

Query: 301  EYLSHRNHPSLSAYFDEG-------------------------ENLTPETVDKCPIPFFV 335
                H   P + +  + G                                 D  P+   +
Sbjct: 556  ILYLHEPKPRVWSAEEIGLVEDVAQRVGHAAERARAEQAERANARELRLIADSLPVLIAL 615

Query: 336  YSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394
            +    +  +AN +          + +     L+ L+     ++            D    
Sbjct: 616  FDADGVCRFANAASADWFGVAPAESVGQT--LAALIGPADFAEARPRFESARAGRDVRAG 673

Query: 395  AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV--- 451
                          +          +               +  D +  +  +E EV   
Sbjct: 674  ------RAWPRRDGSPRIADIRYLPRPMPDGSTDGAYLFVTDISDAKRIEAMLEREVGER 727

Query: 452  -MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
              +   + + T+D +     +G + S N A  +L G+  +++L +PF  F++    +   
Sbjct: 728  TRERDRLWQTTNDLMGTAGLDGHLRSVNPAWGRLLGWSEQELLERPFLDFIDPEDRAGTG 787

Query: 511  HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570
              L  +      Q  + +    +K+ +  ++         S C+ +   DI++ +  + +
Sbjct: 788  AVLARLA--GSDQITDFVDRILSKDGRRRTVMWTAVP--ESGCFHIVGRDITDQRLAEEQ 843

Query: 571  LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
            L  A+K+              ++H+    LT IIG  + +   R           YA   
Sbjct: 844  LRQAQKM-----EAVGQLTGGIAHDFNNLLTGIIGSLD-LMQTRIAQGRIDTLERYAGAA 897

Query: 631  DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
              S +    + + LL  ++    +  L  +PV ++  ++    +++  A  +++ +    
Sbjct: 898  LTSAHRAASLTHRLLAFAR----RQPLEQKPVDVNVLLAGMEEMLR-RALPEQVHLDIVA 952

Query: 691  ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT--------------HTSNEE 736
               +   L D   ++   LN+  NA    P GG++++ T+                    
Sbjct: 953  TEGVWPTLCDPHQLENAVLNLAINARDAMPEGGRLVVETSNAHIGPADLSLHSGAREGAY 1012

Query: 737  VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
            V +RV DTG GM      +A +PF          G GTGLGL +       + G   I S
Sbjct: 1013 VCIRVTDTGHGMPPEVAARAFEPFFTTKPL----GMGTGLGLSMIYGFARQSEGHARIVS 1068

Query: 797  TPAKGTLIEIIFPLYDTS 814
             P +GT + I  P Y  +
Sbjct: 1069 EPGRGTTVTICLPRYRGA 1086



 Score =  113 bits (284), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 43/555 (7%), Positives = 130/555 (23%), Gaps = 62/555 (11%)

Query: 86  TWNID-AHGYLKEISEELPKTIGNYAF----KMIGMRLCDVSDILHIDP-NNHIGDLLKR 139
            W+ D A   +           G                       +      IG +   
Sbjct: 190 IWDWDVAADRVT-ADPRFAALYGVDPEMAAAGAPIAAFFSGVHPDDLPSLKASIGAVFGT 248

Query: 140 QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199
              +  +     ++G      +          +     F G  +              + 
Sbjct: 249 GGQFDAE--YRLVQGDGSIRWVAAQGRCTLGEDGTPRHFPG--VSFDITERKRIEQALRD 304

Query: 200 LDKKFSHLHEIKKGHSSVEKEK-----YDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254
              +F  +           +       Y+              +  +    ++    +  
Sbjct: 305 SQDRFRGIINSVDQMIWSTRPDGYHDFYNERWYAFTGVPAGTTDGEAWNGMFHPDDRERA 364

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
                  L + E+    +      +            +++       +            
Sbjct: 365 WAAWQHALATGEN-YQIEYRLRHRSGLYRWVLGRAQPVRDPDGRIVRWFGTCTDIHDRKL 423

Query: 315 FDEGENLTPETVDKCP-------------------IPFFVYSHGNLFYANPSFLLLTKYK 355
            +E +       D+                     I      +G +        +   + 
Sbjct: 424 AEERQAFLLGLNDRLREADEPQAVTLAAAATLGAHIGVARAGYGEIDETGEIVRVERDWT 483

Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKP-VMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
               +    G S +LD    +    ++  + L   D      +   +   W+     ++ 
Sbjct: 484 RDPSVPSLAGASRILDGFGPAVIAELRAGLTLVVDDCYADPRAGHDYAATWDSIGCRSLV 543

Query: 415 FIPFEKANQFPENMP------------QNGIEPEDVDT-------RINKRKMEIEVMQLC 455
            +P  +  +    +             + G+  +              ++       +L 
Sbjct: 544 VVPLIREGRLRAILYLHEPKPRVWSAEEIGLVEDVAQRVGHAAERARAEQAERANARELR 603

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
            I ++    IA+ + +G+    N A +  FG    + + +     +     +        
Sbjct: 604 LIADSLPVLIALFDADGVCRFANAASADWFGVAPAESVGQTLAALIGPADFAEARPRFES 663

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSH 573
             +    +   +         ++  +R + + +P        L + DIS+ K+ +  L  
Sbjct: 664 ARAGRDVRA-GRAWPRRDGSPRIADIRYLPRPMPDGSTDGAYLFVTDISDAKRIEAML-- 720

Query: 574 AKKIAEKESSHKSDF 588
            ++   + +  +   
Sbjct: 721 -EREVGERTRERDRL 734



 Score =  110 bits (276), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 35/422 (8%), Positives = 103/422 (24%), Gaps = 27/422 (6%)

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ---------SPPPHLR 235
                          L+     L        +     +  +  +          P    R
Sbjct: 25  REILAYPWSDTPLGPLEDWPVSLRTTLATMLACPAAMFLAWGPEGISFFNDAYRPVFGDR 84

Query: 236 MKNKVSS----LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291
           +   + +    +          L        +  + +LP   D + +          +  
Sbjct: 85  LPRALGARFREIWADLWEDIGPLVDAALRGESVAQRNLPLLMDRYGVPEE-SWWSFTYSP 143

Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC-----PIPFFVYS--HGNLFYA 344
           +++++      +      +     +     + E ++        I  + +      +  A
Sbjct: 144 VRDDAGRINGMICVTAETTAEVLAERARRRSDERLEMALSAGGSIGIWDWDVAADRVT-A 202

Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
           +P F  L       ++  AG       +    D+       +     T     A    +Q
Sbjct: 203 DPRFAALYGVDP--EMAAAGAPIAAFFSGVHPDDLPSLKASIGAVFGTGGQFDAEYRLVQ 260

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
            +  +   +         +        G+  +  + +  ++ +     +   I+ +    
Sbjct: 261 GDG-SIRWVAAQGRCTLGEDGTPRHFPGVSFDITERKRIEQALRDSQDRFRGIINSVDQM 319

Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
           I     +G     N       G P      + +      +            L+      
Sbjct: 320 IWSTRPDGYHDFYNERWYAFTGVPAGTTDGEAWNGMFHPDDRERAWAAWQHALATGENYQ 379

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKES 582
           +E      +   + +  R    + P      +  T  DI + K  + + +    + ++  
Sbjct: 380 IEYRLRHRSGLYRWVLGRAQPVRDPDGRIVRWFGTCTDIHDRKLAEERQAFLLGLNDRLR 439

Query: 583 SH 584
             
Sbjct: 440 EA 441



 Score = 88.9 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 25/373 (6%), Positives = 77/373 (20%), Gaps = 27/373 (7%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN-TWYGKTT 148
              G +   ++      G+   + +G R  ++   L  D    +   L+ ++        
Sbjct: 66  GPEG-ISFFNDAYRPVFGDRLPRALGARFREIWADLWEDIGPLVDAALRGESVAQRNLPL 124

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           L    G            P+       +G     +      +       +R D++     
Sbjct: 125 LMDRYGVPEESWWSFTYSPVRDDAGRINGM--ICVTAETTAEVLAERARRRSDERLEMAL 182

Query: 209 EI----------KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
                                 ++       P          +  +  +      LK   
Sbjct: 183 SAGGSIGIWDWDVAADRVTADPRFAALYGVDPEMAAAGAPIAAFFSGVHPDDLPSLKASI 242

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS----HRNHPSLSAY 314
             +  +       +      + +                    +            +   
Sbjct: 243 GAVFGTGG-QFDAEYRLVQGDGSIRWVAAQGRCTLGEDGTPRHFPGVSFDITERKRIEQA 301

Query: 315 FDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
             + ++     ++      +     G   + N  +   T   +      A   + +    
Sbjct: 302 LRDSQDRFRGIINSVDQMIWSTRPDGYHDFYNERWYAFTGVPAGTTDGEA--WNGMFHPD 359

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
                 A        +         RL   +        +        +     +   G 
Sbjct: 360 D--RERAWAAWQHALATGENYQIEYRL---RHRSGLYRWVLGRAQPVRDPDGRIVRWFGT 414

Query: 434 EPEDVDTRINKRK 446
             +  D ++ + +
Sbjct: 415 CTDIHDRKLAEER 427



 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/371 (8%), Positives = 81/371 (21%), Gaps = 32/371 (8%)

Query: 90   DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG-KTT 148
               G+L+ ++    + +G    +++     D  D         +   L   +        
Sbjct: 746  GLDGHLRSVNPAWGRLLGWSEQELLERPFLDFIDPEDRAGTGAVLARLAGSDQITDFVDR 805

Query: 149  LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD------K 202
            +   +G      +   A+P    +  F       +              ++        +
Sbjct: 806  ILSKDGR--RRTVMWTAVP---ESGCFH-----IVGRDITDQRLAEEQLRQAQKMEAVGQ 855

Query: 203  KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
                +        +      D+   +     +    + +      AH+   L        
Sbjct: 856  LTGGIAHDFNNLLTGIIGSLDLMQTRIAQGRIDTLERYAGAALTSAHRAASLTHRLLAFA 915

Query: 263  TSEE-SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
              +     P   +     + +  ++     +  +   +         P      +   NL
Sbjct: 916  RRQPLEQKPVDVNVLLAGMEEMLRRALPEQVHLDIVATEGVWPTLCDP--HQLENAVLNL 973

Query: 322  TPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
                 D  P    +    +  +  P+ L L                T    P      A 
Sbjct: 974  AINARDAMPEGGRLVVETSNAHIGPADLSLHSGAREGAYVCIRVTDTGHGMPPEVAARAF 1033

Query: 382  KPVMLYRSDRTCIAA------------SARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
            +P    +                          +      +     +P  +     E   
Sbjct: 1034 EPFFTTKPLGMGTGLGLSMIYGFARQSEGHARIVSEPGRGTTVTICLPRYRGALSSERAS 1093

Query: 430  QNGIEPEDVDT 440
             +  EP   + 
Sbjct: 1094 VSLPEPARFER 1104


>gi|85710244|ref|ZP_01041309.1| sensor histidine kinase with multiple PAS/PAC and a response
           regulator receiver domain [Erythrobacter sp. NAP1]
 gi|85688954|gb|EAQ28958.1| sensor histidine kinase with multiple PAS/PAC and a response
           regulator receiver domain [Erythrobacter sp. NAP1]
          Length = 999

 Score =  316 bits (811), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 102/568 (17%), Positives = 219/568 (38%), Gaps = 42/568 (7%)

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
           PL+ S  ++         + +   T              +   ++     + +       
Sbjct: 168 PLVASAIAAFAIPLGGQPVWVGALTWFLADALGMILVVPAALLVADAVRTATAPKTTALF 227

Query: 320 NLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
                T       + V+         P   L+     +      G  + L         +
Sbjct: 228 KRAVFTAVALVAVWLVFRQDIY----PLLFLVPPITLLVAFRGGGIGTVLFVPMIAGVAS 283

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
            +                           +  A+  +   +A      +    I      
Sbjct: 284 WMTVA----------------GYGPIVNSSKSALDAVFVLQAFVAANFLTGLPIAAILAG 327

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
                 ++     +L  + E  +D +  ++R+ + +  + +V  + G P ED++  P   
Sbjct: 328 RERMTEELARGRGELGLLAETITDAVLRLDRDRVCIYASPSVEDVMGRPPEDLVGHPIAS 387

Query: 500 FLEQNTPSVMNHYLTEILSLDLR-QTLEKITLGSTKEEKLLSLR----IIIKKLPFSS-C 553
              ++  + +   L  +LS     + +    L   +E   + +     I++  +      
Sbjct: 388 RGPEDAHARIESALDSLLSGQSDKERITYRRLLDDEEGTPVFIEADCAIVLDPITGERDG 447

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
             ++  D++E  + +  L+ A++ AE  +  KS+FLA +SHEIRTP+  ++GF+E++   
Sbjct: 448 VVVSARDVTERVELELLLTRARRHAENAARAKSEFLANMSHEIRTPMNGVLGFAELMLQG 507

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
              P        +   I  SG  ++ ++ND+LD+SKIE+G++ +  +PV L   ++E + 
Sbjct: 508 DLEPDN----RRHTEMIVESGRSMMLLLNDILDLSKIEAGQIAIDSQPVDLVSTLAECVQ 563

Query: 674 LVQLYANEKRILIRTSFANNI----------PRILADLRSVKQIALNILSNAIHFTPSGG 723
           L    A  K + +  + ++ +          P +  D   ++QI LN++ NA+ FT  G 
Sbjct: 564 LHLPNAEGKGLRLNFTASDAVKLGGEGARENPWVATDALRLRQIVLNLIGNAVKFTEKGS 623

Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
            + +  +  +  +  + V+DTG+G+    ++    PF Q  N    R  GTGLGL +++ 
Sbjct: 624 -VDVQLSIQAE-QFRVDVKDTGIGIGAKRVQTIFAPFTQGENDTSRRFGGTGLGLTISRQ 681

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFPLY 811
           + +   G+  + S    G+   +I P +
Sbjct: 682 LAELLGGQIEVCSEVGIGSTFSLILPAH 709



 Score = 40.4 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/146 (10%), Positives = 34/146 (23%), Gaps = 11/146 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK---RQNT 142
              +D        S  +   +G     ++G     ++     D +  I   L       +
Sbjct: 353 VLRLDRDRVCIYASPSVEDVMGRPPEDLVGHP---IASRGPEDAHARIESALDSLLSGQS 409

Query: 143 WYGKTTLWPI--EGTNLYVPIDLAALPIYSR-NREFSGFRGFGIVHVNRVDNDPRALGKR 199
              + T   +  +     V I+     +      E  G              +   L  R
Sbjct: 410 DKERITYRRLLDDEEGTPVFIEADCAIVLDPITGERDGV--VVSARDVTERVELELLLTR 467

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIF 225
             +   +    K    +    +    
Sbjct: 468 ARRHAENAARAKSEFLANMSHEIRTP 493


>gi|300865990|ref|ZP_07110724.1| Sensor protein [Oscillatoria sp. PCC 6506]
 gi|300335981|emb|CBN55882.1| Sensor protein [Oscillatoria sp. PCC 6506]
          Length = 1823

 Score =  316 bits (811), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 133/794 (16%), Positives = 265/794 (33%), Gaps = 112/794 (14%)

Query: 62   VSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV 121
             +   Y    +              + ID  G    ++       G    + +G    D 
Sbjct: 531  TNEAQYAKVLSGLKETA-------IFQIDTAGVWTFLNPAWVAITGFSVSECLGTNFLDW 583

Query: 122  SDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYV-------------------PID 162
                +        +L +   T   +     +    L V                    ++
Sbjct: 584  IHPENQT---ECANLFQSLITLRSEFYRRELSVKKLEVVDAELKILAPQSPIEPNFITVE 640

Query: 163  LAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKY 222
            + A  +       +G   FG +             +  ++    L+E+  G +   +E  
Sbjct: 641  MFAQVMLDSEGAVTGV--FGTLRDISHQLQAVEDLRESEEAIRSLYEVTLGTNGNFEE-- 696

Query: 223  DIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQ 282
                        R+   ++   E +     +L            + LPE   F     + 
Sbjct: 697  ------------RISRLLAMGCERFRMDIGLLGRVAGDRYEVIAAYLPEDFPFGFAKGDG 744

Query: 283  YTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH--GN 340
            +       T +     S E +S  +  +                        V     G 
Sbjct: 745  FAL---GRTFEREVVRSLEPISIESAGTSQWRHHPAYT-VRRLEAFIGARVMVQGRVYGT 800

Query: 341  LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400
            L + +P+     K   ++ ++    L  +    ++S     +   L R  +  +      
Sbjct: 801  LSFTSPAGRSPFKPVELEILK----LMAIYIGTEISREE--REQTLQRQYQRVLLLKQIT 854

Query: 401  HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
              ++   +          +    F  N         +         +      L    E+
Sbjct: 855  QKVRSKLDTLEIFQTTATQIGRVFGVNRCTIHSYIIEPYPH-----LPCVAEYLEPGYES 909

Query: 461  TSDGIAIINREGIILSTNRAVSKLFG----YPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
            T      ++ E  +   N    +L          D+   P           +    +  +
Sbjct: 910  T------LDLELSVTY-NPYTEQLLAEDAALASPDVFADPLLESSAPMCRRIGLKSMLSV 962

Query: 517  LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH-----DISEWKQEK--- 568
             +    +    I      +         I+ L   +              +E K+++   
Sbjct: 963  RTSYQGEP-NGIITLQQCDVTRQWTTDEIELLEDVAAQVGITLAQAHLLETEVKRQEQLA 1021

Query: 569  ---NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
                 L  A++ AE  +  KS+FLA +SHEIRTP+ A+IG + ++ +    P       +
Sbjct: 1022 EQNEALEQARQAAEVANRAKSEFLATMSHEIRTPMNAVIGMTGLLLDMDLTP----EQRD 1077

Query: 626  YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
            +   I  SG+ +L I+ND+LD SKIESGKM+L   P  L   + E++ L+   A+EK + 
Sbjct: 1078 FVETIRTSGDALLTIINDILDFSKIESGKMDLEQHPFELRTCIEESLDLLAPKASEKGLE 1137

Query: 686  IRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH----TSNEE---- 736
            +     +++P ++L D+  ++QI +N+L NA+ FT +G +I++S T       + E    
Sbjct: 1138 LAYLIDSSVPSKVLGDVTRLRQILVNLLGNAVKFTEAG-EIVVSVTARKISERHGEELYK 1196

Query: 737  -------------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
                         + + V+DTG+G+    +++  K F Q+  S   +  GTGLGL +++ 
Sbjct: 1197 LPLSNYQVPVPYEIQIAVKDTGIGIPPDRMDRLFKAFSQVDASTTRQYGGTGLGLAISQR 1256

Query: 784  MVDANMGKFYIFST 797
            + +   GK ++ S 
Sbjct: 1257 LSEMMGGKMWVVSK 1270



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 44/389 (11%), Positives = 107/389 (27%), Gaps = 29/389 (7%)

Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270
            +  +        I S+ +    L M +K           D    T      T    +L 
Sbjct: 298 TRAITVCSNSPSPIRSRDTLESALAMLHKTYDQLPLVMVNDTGHPTGIVNPRTILLQALD 357

Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330
            +     +   Q   +Q    L     E        +   +   F +        +    
Sbjct: 358 SRSLHSGLVGLQRQIEQSSSQLHKAEIEVNRL--KADRQQIEEAFKDSSERANLAIRANS 415

Query: 331 IPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388
              + ++   G +FY+   +  +      +           +    ++D  A     L +
Sbjct: 416 DGIWDWNIQTGEVFYSVR-WKEMLGCDRHEISNTIEEWFNRVHPDDINDLRAALEDHLGK 474

Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
                I        +  +  + + +        N   E +   G   +   ++  +  + 
Sbjct: 475 K---TINFVNESRMLSKDG-SIVWVLARGQALRNIAGEPVRMVGTNTDITLSKQLEIDLR 530

Query: 449 IEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
               Q   +L    +  I  I+  G+    N A   + G+ V + L   F  ++     +
Sbjct: 531 TNEAQYAKVLSGLKETAIFQIDTAGVWTFLNPAWVAITGFSVSECLGTNFLDWIHPENQT 590

Query: 508 VMNHYLTEILSLDLR-----------QTLEKITLGSTK----EEKLLSLRIIIKKLPFSS 552
              +    +++L              + ++            E   +++ +  + +  S 
Sbjct: 591 ECANLFQSLITLRSEFYRRELSVKKLEVVDAELKILAPQSPIEPNFITVEMFAQVMLDSE 650

Query: 553 ----CYSLTMHDISEWKQEKNKLSHAKKI 577
                   T+ DIS   Q    L  +++ 
Sbjct: 651 GAVTGVFGTLRDISHQLQAVEDLRESEEA 679


>gi|299782693|gb|ADJ40691.1| Sensor protein [Lactobacillus fermentum CECT 5716]
          Length = 619

 Score =  316 bits (811), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 88/427 (20%), Positives = 173/427 (40%), Gaps = 47/427 (11%)

Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM-EIEVMQLC 455
             R  T++  R       F    K     E     G            ++  + E  +L 
Sbjct: 212 EMRKQTLRIARG-----DFSGQVKVMGNDELGQLAGAVNNLSVRVEESQESSDAERRRLD 266

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRKPFTVFLEQNTPSVMNHYLT 514
           S+L   SDG+   +R G +   N    +       E +L K     L+      + H + 
Sbjct: 267 SVLSHMSDGVLATDRRGNLTIVNNTALQFLNIADEEQVLGKSILDVLKIRRQFSIRHLVD 326

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS----LTMHDISEWKQEKNK 570
           E     +   L +  +          L      +   S +       +HD++  ++E+ +
Sbjct: 327 EDQDQVILDDLNEDLI----------LSAYFSPIKRESGFVSGLVCVLHDVTSQQKEERE 376

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI-EYANY 629
                         + +F++ VSHE+RTPLT++  + E + +   G + +P     +   
Sbjct: 377 --------------RKEFVSNVSHELRTPLTSVKSYVEALSD---GAINDPELAPRFLGV 419

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN-------EK 682
           +      ++ ++NDLL +S+++SG   L+ E V+++E  +  ++   +          +K
Sbjct: 420 VSDETERMIRMINDLLSLSRMDSGTAKLNLEYVNINELFNYILNRFDMIIKNEAADPSKK 479

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           +  I   F      +  D     Q+  NI++NA+ ++P GG I       ++  VIL + 
Sbjct: 480 KYTIVRYFTKKDLWVEIDTDKFTQVVDNIMNNAVKYSPDGGVITARL-LETHNHVILSIS 538

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G+G+   +L      F ++  ++  +  GTGLGL ++K +V+   G+ ++ S   KG+
Sbjct: 539 DQGLGIPRKDLGHIFDRFFRVDKARSRKQGGTGLGLAISKEVVNLLGGQIWVDSVEGKGS 598

Query: 803 LIEIIFP 809
              I  P
Sbjct: 599 TFYISLP 605


>gi|298531049|ref|ZP_07018450.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509072|gb|EFI32977.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 1079

 Score =  316 bits (811), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 114/778 (14%), Positives = 242/778 (31%), Gaps = 76/778 (9%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI-GDLLKRQNTWYGKT 147
           +DA   +  I+  +   +G   ++  G +  ++   +   P+      LL   N    ++
Sbjct: 28  LDAGHNVVRINRSMADALGVEPWQAQGRKCYELVHGMSRPPDFCPHAKLLCSGNAEQAES 87

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN-RVDNDPRALGKRLDKKFSH 206
            +  + G        ++  P++       G     I             L  R ++  + 
Sbjct: 88  WIDNLNGH-----FHVSTNPLHDSTGRLRGC--VHIARDISHHKKIQEELQDRTERMQAV 140

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP------ 260
           ++ +       + + ++I            KN                 +   P      
Sbjct: 141 MNSMDSLVYVADMQTHEILFIND----YGRKNLGYVTGMKCWEIMQKGASGPCPDCGNHL 196

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
           LL  +      +   H  +            +          L      +      E + 
Sbjct: 197 LLDGQGRPTGTRVREHYNSGEDRWYILRDKAIPWKDGRLVR-LQIATDITQEKKDREKQE 255

Query: 321 LTPETVDKCPIPFFVYSHG--NLFYANPSFLLLTKYKSVDDI-EIAGGLSTLLDAPKLSD 377
                +D     FF+           N        Y   + +      L        + +
Sbjct: 256 RFKAALDSSADSFFIIDCESMKFLDVNLMACQSLGYSREELLNMGPHDLKPEFTFQDMQE 315

Query: 378 -----NNAIKPVML-----YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
                N   +   L        D         L T +    + +        +  +  + 
Sbjct: 316 ICDSVNEDREQAGLIKTLHRTKDGRDFPVEVSLRTFRQRERDLIIAVARDITEFKKAEDA 375

Query: 428 MPQ----------NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
           +              +          ++ +   +MQ+          +   +       T
Sbjct: 376 LRYRMKMHRLLVDMSMVFLTAPIDYLEKAVSEALMQVARFTRTDRTYVFAYDFHNQ-TMT 434

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEE 536
           N       G   +    +     +      + +      +                 K++
Sbjct: 435 NTHEWCAAGVDPQQHRLQNVPFDMAWEPVRLHSQGSPYYIGDIEEMPDWDPLKTHLQKQD 494

Query: 537 KLLSLRIIIKKLPFSSCYSLT-----------------------MHDISEWKQEKNKLSH 573
               L + +K       +                          + +    K  + +L+ 
Sbjct: 495 TKALLSVPLKDHFHCYGFLGVDCVRETREWTRAEIDLFVLLAELLVNARHRKSREEELNQ 554

Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
           A+  AE  +  KS+FLA +SHEIRTPL  +IG S ++ +       + +   +A  +  S
Sbjct: 555 ARLQAEHATRAKSEFLANMSHEIRTPLNGVIGMSGLLLDTEL----DSQQRSFAETLKTS 610

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693
              +L+++ND+LD+SKIE+ ++ L  +  +L+  V ++  ++   A EK + +       
Sbjct: 611 AQTLLNLINDILDLSKIEADRLQLETKGFNLETTVKDSAGILNYQAMEKGLKLGYVIHPG 670

Query: 694 IPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVI--LRVRDTGVGMT 749
           +   +L D   + Q+ +N+L NAI FT  G   + +S      + V     V DTG+G+ 
Sbjct: 671 VHHCLLGDEGRLSQVLVNLLGNAIKFTSQGQVDLEVSPVQEEADHVRLLFEVHDTGIGIP 730

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
             + ++   PF Q+  S      GTGLGL + K++V    G+  + S+  +G+     
Sbjct: 731 EEKQDQLFTPFHQLNTSVTRSFGGTGLGLAICKSLVQMMGGEIGVKSSKGRGSTFWFT 788



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/277 (10%), Positives = 68/277 (24%), Gaps = 19/277 (6%)

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLST 368
                 D    L   T D  P    +   G+ +   N S       +         G   
Sbjct: 2   EFLKEADSEGRLWQFTFDAVPDLIAILDAGHNVVRINRSMADALGVEPWQA----QGRKC 57

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
                 +S      P            A        W    +           +      
Sbjct: 58  YELVHGMSRPPDFCPHAKLLCSGNAEQAE------SWIDNLNGHFHVSTNPLHDSTGRLR 111

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGY 487
               I  +    +  + +++    ++ +++ +    + + + +   IL  N    K  GY
Sbjct: 112 GCVHIARDISHHKKIQEELQDRTERMQAVMNSMDSLVYVADMQTHEILFINDYGRKNLGY 171

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
               +        +++            +L     +             +     +  K 
Sbjct: 172 ----VTGMKCWEIMQKGASGPCPDCGNHLLLDGQGRPTGTRVREHYNSGEDRWYILRDKA 227

Query: 548 LPFSSCYSL---TMHDISEWKQEKNKLSHAKKIAEKE 581
           +P+     +      DI++ K+++ K    K   +  
Sbjct: 228 IPWKDGRLVRLQIATDITQEKKDREKQERFKAALDSS 264



 Score = 67.7 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 19/157 (12%), Positives = 45/157 (28%), Gaps = 8/157 (5%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           ++ + E        +A  D IAI++    ++  NR+++   G        +     +   
Sbjct: 5   KEADSEGRLWQFTFDAVPDLIAILDAGHNVVRINRSMADALGVEPWQAQGRKCYELVHGM 64

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDIS 562
           +         ++L     +  E              +                    DIS
Sbjct: 65  SRPPDFCPHAKLLCSGNAEQAESWIDNLNG---HFHVSTNPLHDSTGRLRGCVHIARDIS 121

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARV---SHEI 596
             K+ + +L    +  +   +     +      +HEI
Sbjct: 122 HHKKIQEELQDRTERMQAVMNSMDSLVYVADMQTHEI 158


>gi|295097697|emb|CBK86787.1| PAS/PAC sensor hybrid histidine kinase [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 772

 Score =  316 bits (811), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 86/435 (19%), Positives = 180/435 (41%), Gaps = 17/435 (3%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L            +L  +Q     +     I   +  +         ++ E
Sbjct: 76  EESRQRLSKLVDKLEEMRERDLKL-NVQLKDNIAQLNQEISDREKAEAERQTTLEQLKVE 134

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             +  + + ++E +   L S L+A+ D +   N +      NRA+  L G   + ++   
Sbjct: 135 MKEREVTQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLIHLK 194

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCY 554
                 +   + +     ++   ++  T E+        +    +R +    ++      
Sbjct: 195 PQDVYSEEAAAKVMETDEKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGL 254

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+        +   E+ S  K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 255 MGFGRDITERKR-------YQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE 307

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     +Y   I  S   + +I ND++D+ K+E  K+ L  +PV     +++  +L
Sbjct: 308 LTS----EQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTGFLADLENL 363

Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
             L A +K +         +P  ++ D   ++QI  N++SNA+ FT  G Q+ +   +  
Sbjct: 364 SGLQAQQKGLSFVMEPTLPLPHKVVTDGTRLRQILWNLISNAVKFTQKG-QVAVRIRYDE 422

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMGKF 792
            + +   V D+G+G+   E +K    + Q+ +S   +   GTG+GL ++K +  +  G  
Sbjct: 423 GDMLHFEVEDSGIGIPQEEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSKRLAKSMGGDI 482

Query: 793 YIFSTPAKGTLIEII 807
            + S P KG+   + 
Sbjct: 483 TVASQPGKGSTFTLT 497



 Score = 43.5 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 15/161 (9%), Positives = 38/161 (23%), Gaps = 8/161 (4%)

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIE 361
           +  +         ++  +     +D  P   F  +        N +  LLT       I 
Sbjct: 133 VEMKEREVTQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLI- 191

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                  L      S+  A K +           +      + +                
Sbjct: 192 ------HLKPQDVYSEEAAAKVMETDEKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYY 245

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
           ++  +     G   +  + +  +  +E       + +   S
Sbjct: 246 DRVGKRHGLMGFGRDITERKRYQDALERASRDKTTFISTIS 286


>gi|83311392|ref|YP_421656.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82946233|dbj|BAE51097.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 1196

 Score =  316 bits (811), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 122/623 (19%), Positives = 216/623 (34%), Gaps = 27/623 (4%)

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
           L ++     EI                       + + +     T    + + V      
Sbjct: 162 LAERSRAQAEIISQLDVEVHRAMGGLVGDPALATVVLASNYLRETVVAGNLEKVGDLRAA 221

Query: 260 PLLTSE-ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
                   + L +     T      T++         +      L       L+A  DEG
Sbjct: 222 YEEQVRYLAELVDASGARTPRTRDLTRRVLALGTGPENVFELRTLQMLTIARLAAANDEG 281

Query: 319 ENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
            +L   T     +   V +       N              + +   L+     P L   
Sbjct: 282 RDLVART--SSSVGRLVSAAEAEAAENERRTEAAVSSGRTTMLVVAMLT--FFGPLLFIW 337

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
             +   ++ R      +  A                 IP +  ++  +   +  +  + +
Sbjct: 338 LYLGRSVVARLAGLASSMHAI--------AEGDFQAPIPGQGNDEITDMAAELAVFRDAM 389

Query: 439 DTRINKRK-MEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKP 496
                  + +     +L  IL+ +   +AI    +  IL  N   S+L+  P    L   
Sbjct: 390 AKLQESSEALIESERRLRRILDTSPLALAISRVSDNAILLVNPRWSELYRLPKGRALGMT 449

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556
                           +  +         E     S   E    L     ++        
Sbjct: 450 VASCYADPANRA--RLVELVRKRGFVSGFECRMRASDGHEFWAMLSAAEIEMDGEPAVIA 507

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
           +  DI+  K+E+  L+ AKK+AE+ S  KS FLA +SHEIRTP+  ++  ++++++    
Sbjct: 508 SSTDITRHKEEEAALAEAKKVAEEASQAKSLFLATMSHEIRTPMNGVLTMAQLLEDMPLP 567

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
                   E A  I  S   +L I+ND+LD SKIE+ K+ L    +SL E V     L+ 
Sbjct: 568 A----EQREMARVIRDSATSLLTIINDILDFSKIEADKLQLELVDLSLSEVVEGVADLLT 623

Query: 677 LYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
           + A EK I + T     +   ++ D   ++QI  N+  NAI FT  G  + I+       
Sbjct: 624 IRAQEKGISLITFVDPALTDMVVGDPIRLRQIITNLAGNAIKFTDKG-YVRIAVRALDPR 682

Query: 736 E----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
           E    +   + DTG+G+ + +  +  +PF Q   +   R  GTGLGL + + +V    G+
Sbjct: 683 ERPLRLEFSITDTGIGLDSEQQARLFEPFMQADITISRRYGGTGLGLSICRRLVAMMGGE 742

Query: 792 FYIFSTPAKGTLIEIIFPLYDTS 814
             + S   +G+      PL    
Sbjct: 743 IGVRSNVGQGSTFWFQVPLEPAE 765


>gi|332703496|ref|ZP_08423584.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332553645|gb|EGJ50689.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 715

 Score =  316 bits (811), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 103/524 (19%), Positives = 182/524 (34%), Gaps = 45/524 (8%)

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYSHGN--LFYANPSFLLLTKYKS------VDDIEIA 363
               +E   +          P  +   G   +  AN S               +D     
Sbjct: 73  RQSIEEQVRVYQGLFGSNLNPMLLVDPGTLAIVEANASARDFYGRNDIAGSKLLDLTVPK 132

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
            G      A   + +           +            I+  R++ L +         +
Sbjct: 133 NGQPPSELALSHAKSAQRIISRHMAREGAQRDVEIIASPIRLCRKDLLHVIVTDLTAYLE 192

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
                 +                       L S L+     + I + +G +   N     
Sbjct: 193 KEVRYRRLHTF-------------------LWSFLDNIPCPLHITDLDGRLSLVNPDWES 233

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT----LGSTKEEKLL 539
           L G    D++ +  +    +        ++ ++        +E       +    +  L 
Sbjct: 234 LMGRRYVDVVGRHVSEIFGEEIARSFLEHMRQVAESGKPLRIEDKLYLGGVLRCFDTILF 293

Query: 540 SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
            +      +     +SL   DI+E K+ + +L  A++ AE     KS FLA +SHE+RTP
Sbjct: 294 PVLNESGLVEGVGGFSL---DITERKKAEQELVQARQKAEVADRAKSQFLANMSHELRTP 350

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  I+G  E++   R      P   ++      S + +L +VNDLL++S +E  +     
Sbjct: 351 LNGIVGMIELLLISR----SEPEERKFLELARASAHDLLGLVNDLLELSTLERKRFEPIS 406

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHF 718
            P  L EAV        + A  K +         +  + L D   +KQ+ +N+L NA+ F
Sbjct: 407 RPFGLAEAVDSVARFFSVRARLKGLDFTACVDPALSGQFLGDELRLKQVLINLLDNAVKF 466

Query: 719 TPSGG-QIIISTTHTSNEE-----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           T SG  ++ +       ++     V   V DTG+G+ N +L +  + F    N    R  
Sbjct: 467 TESGSVRLEVRLAEKDRQDGAALPVTFLVSDTGIGIPNDKLAEVFEGFNLGENYLTKRYG 526

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           G GLGL +AK +V    G+    S+  +G+L      L     P
Sbjct: 527 GAGLGLAIAKHIVSKLGGRIEAESSVGRGSLFHFTISLPRAIQP 570



 Score = 58.1 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 23/231 (9%), Positives = 53/231 (22%), Gaps = 7/231 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            D  G L  ++ +    +G     ++G  + ++               +           
Sbjct: 218 TDLDGRLSLVNPDWESLMGRRYVDVVGRHVSEIFGEEIARSFLEHMRQVAESGKPLRIED 277

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
              + G        L   P+ + +    G  GF +               +  +K     
Sbjct: 278 KLYLGGVLRCFDTILF--PVLNESGLVEGVGGFSL--DITERKKAEQELVQARQKAEVAD 333

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
             K    +    +              ++  + S +E    K   L       L    + 
Sbjct: 334 RAKSQFLANMSHELRTPLN---GIVGMIELLLISRSEPEERKFLELARASAHDLLGLVND 390

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
           L E            ++        ++    F   +       +A  D   
Sbjct: 391 LLELSTLERKRFEPISRPFGLAEAVDSVARFFSVRARLKGLDFTACVDPAL 441


>gi|29349960|ref|NP_813463.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|29341871|gb|AAO79657.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 635

 Score =  316 bits (811), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 110/497 (22%), Positives = 185/497 (37%), Gaps = 20/497 (4%)

Query: 315 FDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
             E        +    I  + Y    G   + +  F      K    +     ++     
Sbjct: 17  IRENSQKILSVLAAHQIALWEYDIPTGKCSFTDDYF-RTLGLKEAGVV--FKDINDFYHF 73

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
               D NA +            A+  ++  +  + E           K N+  +      
Sbjct: 74  AYPEDINAYQTAFAKMLASESKASQIQVRCVGEHGEVIWLEDHFLSYKGNEEGDPDKLLA 133

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
                      ++ ++        I+EA  + I I +    I     A   +  +PVE +
Sbjct: 134 YTVNVTSQCEKEQHIKHLEEHNRKIIEALPEFIFIFDENFFITDVLMAPGTILLHPVEVL 193

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
                          +    + E L     + +E         +     RI        +
Sbjct: 194 KGADGRSIYSPEVSDLFLCNIRECLKDGKLKEIEYPLEV-DGSKHYFQARIAPF---EGN 249

Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
                +HDI +  +   +L  AK+ AE     KS FLA +SHEIRTPL AI+GFSE++  
Sbjct: 250 TVLALIHDIGDRIRRSEELIEAKRRAEDADRMKSVFLANMSHEIRTPLNAIVGFSEIMA- 308

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
                       EY   I ++ NL+L ++ND+LD+S+IESGK  +HF+ V +   V E  
Sbjct: 309 ---LTENEEEKHEYLEIIQKNSNLLLQLINDILDLSRIESGKSEMHFQQVEIAGLVDEVE 365

Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
            + QL      + ++            D   V Q+  N LSNAI  T +G  I +     
Sbjct: 366 KVHQLKMKL-NVDLKVVRPQGEFWTSTDRNRVMQVLFNFLSNAIKNTETGS-ITLGLK-Q 422

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
             + + L V DTG G+   +L +    F ++        +GTGLGL + K++V+   G+ 
Sbjct: 423 EGDWLKLFVSDTGCGIPEEKLPQIFTRFEKL----NDFVQGTGLGLSICKSIVERLGGRI 478

Query: 793 YIFSTPAKGTLIEIIFP 809
            + S   +G+   +  P
Sbjct: 479 EVSSELGQGSTFALYLP 495


>gi|294497707|ref|YP_003561407.1| two-component sensor histidine kinase/response regulator [Bacillus
           megaterium QM B1551]
 gi|294347644|gb|ADE67973.1| two-component sensor histidine kinase/response regulator [Bacillus
           megaterium QM B1551]
          Length = 957

 Score =  316 bits (811), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 100/601 (16%), Positives = 225/601 (37%), Gaps = 46/601 (7%)

Query: 238 NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297
           +++  L++ +      L+  +  L    E  + +Q++ H+         +     +   +
Sbjct: 244 DEIGMLSQAFYKMVSTLQNNEQELTAQNEELIAQQDELHSQQDELQHALELTKEREGELE 303

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSV 357
               ++      + S +  E        + +         HG +  A+          S 
Sbjct: 304 LRNLFVHG---LTNSLHKQEVLTSAVTNMSR----VMKADHGFIMLADEKTHASFGLSSS 356

Query: 358 DDIEIAGGLSTLLDAPK------LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411
              ++   L              +               +T       +  +    +   
Sbjct: 357 SVQQMVANLHNNYVDHVQKTKKCMVVKRECIENERLYHQQTFYLYDVIVPVLSSQGDMLA 416

Query: 412 AMTFIPFEKA--NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL--CSILEATSDGIAI 467
            M +  +     +   +       +      +I   + E E  +L    IL +  +G+ +
Sbjct: 417 YMFYSRYADEYTDHELQTFEILAKQITIALEKIYIYE-ESEHDRLLSQDILNSIQEGMQL 475

Query: 468 INREGIILSTNRAVSKLFGYPVED-ILRKPFTVFLEQ-----NTPSVMNHYLTEILSLDL 521
           ++  G IL  N  +S+LF Y  +  +L+     +L+           +  Y+  I   + 
Sbjct: 476 VDTSGTILQVNTKISELFQYEHQSGLLQLSRDQWLDALSQKVENIQQLRQYVEAICKGEQ 535

Query: 522 RQTLEKITLGSTKEEKLLSL-RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
            +      L +  + K++ +    + +            DI+                 +
Sbjct: 536 VEKSFVYYLYTEGKRKVIKVYSEYVYRNRQMFGVLFVHRDIT--------------KEFE 581

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
               KS+F++ VSHE+RTPL +++GF+E++ N+    L   R  +Y   I +    +  +
Sbjct: 582 VDQMKSEFVSTVSHELRTPLASVLGFTELMLNK---TLKEERQKKYLTTIYQEAQRLTSL 638

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILAD 700
           +ND LD+ ++E+GK     +   +   + + I + ++  ++               ++ D
Sbjct: 639 INDFLDVQRMEAGKQTYDKKYQDILPLIKQVIEVQKIQTSKH--EFDMISDQEHFTVMGD 696

Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760
              + Q+  N++SNA+ ++P GG + +   +     V + ++D G+G+ +  L +    F
Sbjct: 697 KDKLLQLFNNVISNAVKYSPDGGNVTVKV-YQKEHAVYIDIQDEGIGIPSEALGQLFTKF 755

Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP-LYDTSHPHDC 819
            ++ NS   +  GTGLGL + K +V A+ G   + S   KGT   ++ P LY+  +  + 
Sbjct: 756 YRVDNSDMRKIGGTGLGLAIVKEIVKAHGGDITVQSEWKKGTTFTVVLPLLYEVQYDEEM 815

Query: 820 I 820
           I
Sbjct: 816 I 816


>gi|289435295|ref|YP_003465167.1| sensor histidine kinase ResE [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289171539|emb|CBH28085.1| sensor histidine kinase ResE [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 596

 Score =  316 bits (811), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 78/377 (20%), Positives = 156/377 (41%), Gaps = 42/377 (11%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
             +  E  QL +IL   +DG+   + +  I+ +N    +                F    
Sbjct: 249 SALRQEKEQLSNILVGMADGVIKFSIDKTIILSNPPAEEFLH-----------NWFFSPE 297

Query: 505 TPS------VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM 558
                     +++ L + L     Q  E        +   +++  ++            +
Sbjct: 298 NAEKVLIPVALDNLLNDTLEAKESQVGEITF----ADRTYVAILTLLYTGEHVRSIVAVI 353

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            D++E KQ +                KSDF+  VSHE+RTP++ + G+SE I +      
Sbjct: 354 RDMTEEKQLE--------------KMKSDFVNNVSHELRTPISMLQGYSEAIIDGV--AQ 397

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
            +    E+A  I      +  +VND+LD++++E+G   +  + + L   + + ++   + 
Sbjct: 398 SDEEVREFAQIIYDESLRIGRLVNDMLDLARMEAGFNQMDNQKLPLAPLLEKVMANFDVL 457

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS----GGQIIISTTHTSN 734
           A E  + +             D   ++Q+ +N++ NAI  T      G  ++  T   +N
Sbjct: 458 AKENFVELGLELETPNLEYSYDPDRMEQVLINLIMNAIRHTGKEGYQGKVVLKQTIDETN 517

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGEGTGLGLPLAKAMVDANMGKFY 793
            ++I+ V D G G+   ++    + F +   +++  +  GTG+GL + K +V+A+ GK  
Sbjct: 518 NKLIITVSDNGSGIAEEDIPYLFERFYKADKARKRGKAVGTGIGLAIVKNIVEAHGGKIS 577

Query: 794 IFSTPAKGTLIEIIFPL 810
           + S   KG+   I  PL
Sbjct: 578 VKSELGKGSDFIITLPL 594


>gi|218889603|ref|YP_002438467.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           LESB58]
 gi|218769826|emb|CAW25586.1| probable sensor/response regulator hybrid [Pseudomonas aeruginosa
           LESB58]
          Length = 1417

 Score =  316 bits (811), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 112/662 (16%), Positives = 223/662 (33%), Gaps = 48/662 (7%)

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS--LTE 245
           R+     A  +                  ++    D           R +  V    +  
Sbjct: 334 RLRRRREAATQARLAAIVGNSADGIIGVGLDGVISDWNRGAEALFGYREEQAVGRRVVDL 393

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
                 +  + +    +  +E  +         + +          +             
Sbjct: 394 LVPPSKENEELDILARIARKEQVVSFDTVRRHQDGHLLDVAVTVSPILGPDGGVVGASKT 453

Query: 306 RNHPSLSAYFDEGENLTPETVDK-------------------CPIP-----FFVYSHGNL 341
               S     +         ++                               +   G +
Sbjct: 454 VRDISAKKAAEARIRELNTGLEHQIAERTAELRRLNVLLGSVLQAASEVSIITLDRDGII 513

Query: 342 FYANPSFLLLTKYKSVDDIEIAGGL----STLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397
              N     +  Y++ + +  A          L A           V++ R+++    A 
Sbjct: 514 SGFNLGAERMLGYRADEVVGKASPTLLHSERELLARGQELGEEGFRVLVARAEQEG--AE 571

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
            R  T      + L++T       ++        GI  +  + R  +R+M     QL   
Sbjct: 572 TREWTYLRKDGSPLSVTLSVTVLRDEAGAINGYLGIAVDVTEWRNAEREMAAARDQLQMA 631

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFG----YPVEDILRKPFTVFLEQNTPSVMNHYL 513
            +    GI   N     L  N  + +L+G         ++ + +   L           L
Sbjct: 632 ADVARLGIWRWNLADDSLQWNERMCELYGQPLALRDGGLVYEHWRSRLHPEDLERTEASL 691

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKNKL 571
              +       +    +      + +     +++    +    +    DI+  +Q + +L
Sbjct: 692 RAAVEGRGNYDVIFRVVLPDGGIRFIQAGAQVERDADGNPLQVTGINIDITSDQQLQARL 751

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
             AK+ A+  S+ KS FLA +SHEIRTP+ A++G  ++ +        N R  +Y +   
Sbjct: 752 REAKEQADAASAAKSSFLANMSHEIRTPMNAVLGMLQLARQTDL----NERQRDYLDKAS 807

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
            +   +L ++ND+LD SKIE+GK+ L   P  L+  + +   ++     +K + +     
Sbjct: 808 SAATSLLGLLNDILDYSKIEAGKLVLEMLPFELEPLMQDLAVVLSGNQGDKDVEVIFDID 867

Query: 692 NNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH--TSNEEVILRV--RDTGV 746
             +P  ++ D   ++QI +N+  NA+ FT  G  +++S          V LRV   DTG+
Sbjct: 868 PELPSAVVGDRLRLQQILINLAGNALKFTARG-HVLVSLRRLAHDAHLVRLRVLVADTGI 926

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G++  + ++  + F Q   S   R  GTGLGL + K +VD   G+  + S P  G+    
Sbjct: 927 GISAEQQQRIFEGFTQAEASTSRRFGGTGLGLFICKRLVDLMGGELRVESAPGSGSRFWF 986

Query: 807 IF 808
             
Sbjct: 987 DL 988



 Score =  110 bits (275), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 69/523 (13%), Positives = 141/523 (26%), Gaps = 61/523 (11%)

Query: 97  EISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTN 156
            ++E+  +       +++   +    ++         G LL        +          
Sbjct: 34  LVNEQQARMALEREAELLAEAVTRRVELYQYGLRGVRGALLTAGEAHIDRELFRR----- 88

Query: 157 LYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSS 216
                          +REF G RGFG +   RV     A   R  +         +  + 
Sbjct: 89  --------YSLTRDIDREFPGARGFGFIR--RVAAADEAGFLRQARADGQPEFRIQQLTP 138

Query: 217 VEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFH 276
            + E+Y I   +    + +      +                   LT   + +       
Sbjct: 139 HDGERYVIQYIEPVARNGQALGLDIASEANRREAARAALETGQVRLTGPITLVQASGLRQ 198

Query: 277 TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY 336
              L                +                 +     LT E +   PI     
Sbjct: 199 QSFLILMPIY----------RSGITPPPGPQRELEGFGWSYAPLLTGEVLAGLPI----- 243

Query: 337 SHGNLFYANPS-FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIA 395
                   N +  L L+                   A +L  +   + +          A
Sbjct: 244 -------DNAAIHLELSDVTGDGAAVPFFVNGAAAPAQRLFGHMLRREIYGRHWQMAFSA 296

Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
               +  +       L +             N    G        R+ +R+      +L 
Sbjct: 297 LPLFVQRLHQPSPRILFLAGSLVSLLLAALVNASALG--------RLRRRREAATQARLA 348

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS-VMNHYLT 514
           +I+  ++DGI  +  +G+I   NR    LFGY  E  + +     L   +        L 
Sbjct: 349 AIVGNSADGIIGVGLDGVISDWNRGAEALFGYREEQAVGRRVVDLLVPPSKENEELDILA 408

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNK 570
            I      Q +   T+   ++  LL + + +  +       +    T+ DIS  K  + +
Sbjct: 409 RIA--RKEQVVSFDTVRRHQDGHLLDVAVTVSPILGPDGGVVGASKTVRDISAKKAAEAR 466

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
           +       E + + ++        E+R  L  ++G      ++
Sbjct: 467 IRELNTGLEHQIAERTA-------ELRR-LNVLLGSVLQAASE 501



 Score = 93.9 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/404 (8%), Positives = 93/404 (23%), Gaps = 46/404 (11%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL--HIDPNNHIGDLLKRQNTWYGK 146
           +   G + + +       G    + +G R+ D+        +  + +  + +++      
Sbjct: 361 VGLDGVISDWNRGAEALFGYREEQAVGRRVVDLLVPPSKENEELDILARIARKEQVVSFD 420

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR------- 199
           T     +G  L V + ++  PI   +    G      V          A  +        
Sbjct: 421 TVRRHQDGHLLDVAVTVS--PILGPDGGVVGASK--TVRDISAKKAAEARIRELNTGLEH 476

Query: 200 ---------------LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244
                          L        E+       +                R    V   +
Sbjct: 477 QIAERTAELRRLNVLLGSVLQAASEVSIITLDRDGIISGFNLGAERMLGYRADEVVGKAS 536

Query: 245 EYYAHKDDVLKTEKYPL----------LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294
               H +  L      L             +E +   +  +   + +  +       L++
Sbjct: 537 PTLLHSERELLARGQELGEEGFRVLVARAEQEGAETREWTYLRKDGSPLSVTLSVTVLRD 596

Query: 295 NSKESFEYLSHRNHPSLSAYFDEG----ENLTPETVDKCPIPFFVYS-HGNLFYANPSFL 349
            +     YL      +     +       +      D   +  + ++   +    N    
Sbjct: 597 EAGAINGYLGIAVDVTEWRNAEREMAAARDQLQMAADVARLGIWRWNLADDSLQWNERMC 656

Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
            L        +   G +     +    ++       L  +             +  +   
Sbjct: 657 ELYGQPL--ALRDGGLVYEHWRSRLHPEDLERTEASLRAAVEGRGNYDVIFRVVLPDGG- 713

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
              +      + +     +   GI  +    +  + ++     Q
Sbjct: 714 IRFIQAGAQVERDADGNPLQVTGINIDITSDQQLQARLREAKEQ 757


>gi|87308804|ref|ZP_01090943.1| PAS protein [Blastopirellula marina DSM 3645]
 gi|87288515|gb|EAQ80410.1| PAS protein [Blastopirellula marina DSM 3645]
          Length = 1373

 Score =  316 bits (811), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 114/701 (16%), Positives = 222/701 (31%), Gaps = 71/701 (10%)

Query: 116  MRLCDVSDILHIDPNN-HIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNRE 174
                D+       P    I    K++     +     +  T     + LA  PI  R   
Sbjct: 596  HDFLDLMIPDLRIPVTTAIQQAAKKRTPVSFRGIRIQVGDTQQV--VHLAVKPIQDRQ-- 651

Query: 175  FSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL 234
             +G   F I                     +      +  + V  E       +      
Sbjct: 652  -TGGEFFLI---------------------TFQPLTSRSTAEVAAEADIGLGIEEA---- 685

Query: 235  RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294
              ++++ +L     +  + L+     + TS E      E+    N    +  +   ++  
Sbjct: 686  -SRDQIVALEGELRYTKENLQATVEEMETSNEELQATNEELVASNEELQSTNEELHSVNE 744

Query: 295  NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKY 354
                       +         D    L    +       F+     +    P        
Sbjct: 745  ELYTVNAEYQKKIAELTEMTADLDSLLYSTDLG----VIFLDRELCIRKYTPKIGDAFHL 800

Query: 355  KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
             + D        S  ++   L D+     +     +   I    R          S  + 
Sbjct: 801  VASDIGRRIDSFSHNIEHAGLMDD-----LNAVLENGEPIEREVRA-------GQSQTLL 848

Query: 415  FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII 474
                    +            +    +      E E   +  +    +D I + + EG I
Sbjct: 849  LRVLPYRPKQ-TVQGVVLTLIDISRLKQA----ENESRLMSKVFVDAADPIVVEDLEGRI 903

Query: 475  LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
               N    +++ Y   +++ + F + +               L           T+   +
Sbjct: 904  TDLNAEAQRVYDYSRSELIGQRFELLVPPEDSLRSRELRQRCLEKG--GLRNIETVKQDR 961

Query: 535  EEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
            +  +  + + +  L          + +  DI++    + +       A    +++  FLA
Sbjct: 962  QGNVFPVLLTLSVLTDEQGKPVAIASSAKDITDRINAEKE-------ARAAVNNRDQFLA 1014

Query: 591  RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650
             +SHE+R PL A +  + V+      P  +P   E  + I R       +++DLLD+S++
Sbjct: 1015 MLSHELRNPLGATLTATYVL---DLEPNLSPDVREVCDVIQRQTLQAARLLDDLLDVSRV 1071

Query: 651  ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710
              GK+ +  + V L   V +    V      +   +          +  D   + QI  N
Sbjct: 1072 MRGKIEIRPQVVDLRTLVEDVTQAVAPLIQAREHNLVIEVPETPVLVEGDPTRLLQIQEN 1131

Query: 711  ILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
            +L+NA  +T  GG+I  S +    E V  RV+D G G+  + LE+  + F Q  ++    
Sbjct: 1132 LLANAARYTAPGGEIRFSLSREDGEAVN-RVKDNGSGIPPHMLERIFELFVQSDDTLDRT 1190

Query: 771  GEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFPL 810
              G GLGL L K +V+ + G+    S  P KG+   +  PL
Sbjct: 1191 DGGMGLGLTLVKTLVELHGGRVSAHSDGPGKGSEFVLRLPL 1231



 Score = 58.1 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 32/257 (12%), Positives = 64/257 (24%), Gaps = 8/257 (3%)

Query: 90   DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL-LKRQNTWYGKTT 148
            D  G + +++ E  +       ++IG R   +        +  +    L++      +T 
Sbjct: 898  DLEGRITDLNAEAQRVYDYSRSELIGQRFELLVPPEDSLRSRELRQRCLEKGGLRNIETV 957

Query: 149  LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFG---IVHVNRVDNDPRALGKRLDKKFS 205
                +G    V + L+ L       +              +N       A+  R      
Sbjct: 958  KQDRQGNVFPVLLTLSVL--TDEQGKPVAIASSAKDITDRINAEKEARAAVNNRDQFLAM 1015

Query: 206  HLHEIKKGHSSVEKEKYDI-FSQQSPPPHLRMKNKVSSLTEYYAH-KDDVLKTEKYPLLT 263
              HE++    +     Y +       P    + + +   T   A   DD+L   +     
Sbjct: 1016 LSHELRNPLGATLTATYVLDLEPNLSPDVREVCDVIQRQTLQAARLLDDLLDVSRVMRGK 1075

Query: 264  SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
             E             ++ Q           N   E  E               +   L  
Sbjct: 1076 IEIRPQVVDLRTLVEDVTQAVAPLIQAREHNLVIEVPETPVLVEGDPTRLLQIQENLLAN 1135

Query: 324  ETVDKCPIPFFVYSHGN 340
                  P     +S   
Sbjct: 1136 AARYTAPGGEIRFSLSR 1152


>gi|288905746|ref|YP_003430968.1| essential two-component sensor histidine kinase [Streptococcus
           gallolyticus UCN34]
 gi|306831844|ref|ZP_07465000.1| sensor histidine kinase VicK [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|325978779|ref|YP_004288495.1| two-component sensor histidine kinase [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
 gi|288732472|emb|CBI14044.1| conserved essential two-component sensor histidine kinase
           [Streptococcus gallolyticus UCN34]
 gi|304426042|gb|EFM29158.1| sensor histidine kinase VicK [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|325178707|emb|CBZ48751.1| two-component sensor histidine kinase [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
          Length = 450

 Score =  316 bits (811), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 84/378 (22%), Positives = 164/378 (43%), Gaps = 35/378 (9%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           R+ +  +  E  +L SIL   +DG+   +R G I   N+   +      E+ L+      
Sbjct: 83  RLAQENLAQEKNRLASILSYMTDGVLATDRAGNITMINQTAQQQLNLEREEALQMNIVDI 142

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS----L 556
           L  ++    +  +         +T E +     +  + ++LRI        S +      
Sbjct: 143 LGSDSTYSYHDLV--------SKTPEIVLNRRDETGEFITLRIRFALNRRDSGFISGLIA 194

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            +HD +E ++E                 +  F++ VSHE+RTPLT++  + E +     G
Sbjct: 195 VLHDTTEQEKE--------------DRERRLFVSNVSHELRTPLTSVKSYLEAL---DEG 237

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV- 675
            L       +        N ++ +++DLL++S+I++  + L  E  +    ++  ++   
Sbjct: 238 ALKEDIAPSFIKVSLDETNRMIRMISDLLNLSRIDNQTVQLEVEMTNFTAFMTSILNRFD 297

Query: 676 ----QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
               Q   + K+  I   +      +  D   + Q+  NIL+NAI ++P GG+I +S   
Sbjct: 298 QIKSQHTISGKQYEIVRDYPIKSIWLEIDPDKMTQVLDNILNNAIKYSPDGGKITVSMKT 357

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
           T   ++I+ + D G+G+   +L      F ++  ++     G+GLGL +AK +V  + G 
Sbjct: 358 TET-QLIISISDEGLGIPKKDLPLIFDRFYRVDKARSRAQGGSGLGLAIAKEIVKQHKGF 416

Query: 792 FYIFSTPAKGTLIEIIFP 809
            +  ST  KG+   I+ P
Sbjct: 417 IWAQSTYGKGSTFTIVLP 434


>gi|66044540|ref|YP_234381.1| PAS [Pseudomonas syringae pv. syringae B728a]
 gi|63255247|gb|AAY36343.1| PAS [Pseudomonas syringae pv. syringae B728a]
          Length = 1209

 Score =  316 bits (811), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 131/754 (17%), Positives = 264/754 (35%), Gaps = 54/754 (7%)

Query: 75  VFDPIPRTVRFTWNI-DAHGYLK-EISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH 132
            F+     V F++ + D    L   I+  L     + + +++G         L  D    
Sbjct: 239 KFESRLPPVGFSFAVRDDEQRLLNFINRALDSIAPSTSREVLGR-WTM---GLGADVEGQ 294

Query: 133 IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIY---SRNREFSGFRGFGIVHVNRV 189
              L   +  W     L     T   V       P Y     N  + G     +  ++R+
Sbjct: 295 RIRLTSAERRW----LLKHPSVTIATVQH-----PPYIYKDNNGHWVGLNADVLSRISRM 345

Query: 190 DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH 249
               + + +        +  ++ G + +     +   ++     L         +  +  
Sbjct: 346 -TGLQFVHQESLSTQQSIDMLRAGQADMNTTLAENTERRR---FLDFTYSFGGNSWMFVV 401

Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
           + D         L  +  +LP +                   L++  +     +  R   
Sbjct: 402 RSDHSSRISLDSLAGKVLALPARH-----------------ALEDLIRREHPLIQLRLVN 444

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
           +        E+   +   +  +  +++  G L  A  S            I+    L  +
Sbjct: 445 TYDQARALVESGAADATIQNEVGAYLFPSGELKVA-RSVEGQWSPDRFSVIKTQPELLGI 503

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
           L+        A    +  +   + +          W R        +             
Sbjct: 504 LNKALEEFPVAELRSIRLKWLGSALP-----QPSLWARIPPWVFWVVSLALLTGLVSLTW 558

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
            + ++ +    +  +R++  ++    ++L+   + I + + +G ++S NR+  +  G   
Sbjct: 559 SSRLKVQIRQRQRAQRQLNDQLAFKHALLDGIPNPIYVRDLKGRLISCNRSYEQSLGISF 618

Query: 490 EDILRKPFT--VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
           E +  +  T    + +     M+     +L        ++      K   +    +    
Sbjct: 619 EQMNGRRLTDVNLIPRALAEQMHTDYLNLLENHQPVFSDRTIELPGKRMDVWQWTVPFFA 678

Query: 548 LPFS-SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
                        DI+E KQ + +L  A ++A + +  KS FLA +SHEIRTP+ AIIG 
Sbjct: 679 ADGQLQGLLGGWIDITERKQLEQQLQEATRLAAQANEAKSAFLASMSHEIRTPMGAIIGL 738

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
            E+   Q       P          RS   ++ ++ + LD+++IE+G M L     SL  
Sbjct: 739 LELECEQALRLGTMPSQG--LQVAHRSATELVALIGESLDLARIEAGGMQLSLAVTSLQG 796

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQI 725
                I L    A EK + +R  F+         D   ++Q+  N+L NA+ FT  G  +
Sbjct: 797 LFDGVIELFSAQAREKGVELRLEFSAQARGDYWLDPLRLRQVLHNVLGNALKFTRQGAVV 856

Query: 726 I---ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
           +   +++    +  V + ++D+G G+     ++  +PF Q  +       G+GLGL + +
Sbjct: 857 VRLDVTSDSPESTRVRIGIQDSGEGIDPQRQQQVFQPFTQANDDTAAHYGGSGLGLSITR 916

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
            +V+   G   + S P KGTL+ I  PL   S P
Sbjct: 917 QLVELMRGDISLHSEPGKGTLVTIDLPLTRVSEP 950


>gi|293365511|ref|ZP_06612220.1| sensor histidine kinase [Streptococcus oralis ATCC 35037]
 gi|307703469|ref|ZP_07640411.1| two-component sensor histidine kinase [Streptococcus oralis ATCC
           35037]
 gi|315613221|ref|ZP_07888131.1| sensor histidine kinase VicK [Streptococcus sanguinis ATCC 49296]
 gi|291315879|gb|EFE56323.1| sensor histidine kinase [Streptococcus oralis ATCC 35037]
 gi|307622876|gb|EFO01871.1| two-component sensor histidine kinase [Streptococcus oralis ATCC
           35037]
 gi|315314783|gb|EFU62825.1| sensor histidine kinase VicK [Streptococcus sanguinis ATCC 49296]
          Length = 449

 Score =  316 bits (811), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 95/376 (25%), Positives = 171/376 (45%), Gaps = 33/376 (8%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           R+ +  +E E  +L SIL   +DG+   NR G I   N    K  G   ED+L K     
Sbjct: 83  RLTQENLEQESKRLNSILSYMTDGVLATNRRGQITMINDMAKKQLGVQKEDVLNKSILEL 142

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SL 556
           L+      +   +T+I  L +               + LSLR+    +   S +      
Sbjct: 143 LKIEDEYELRDLITQIPELTIDS--------QDVNGEYLSLRVRFALVRRESGFISGLVA 194

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            +HD +E ++E+ +                 F++ VSHE+RTPLT++  + E +     G
Sbjct: 195 VLHDTTEQEKEERERRL--------------FVSNVSHELRTPLTSVKSYLEAL---DEG 237

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV- 675
            L +P   ++        N ++ +V DLL +S+I++    L  E ++    ++  ++   
Sbjct: 238 ALYDPVAPDFIKVSLDETNRMMRMVTDLLHLSRIDNTTSQLDVELINFTAFITFILNRFD 297

Query: 676 --QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
             +   +EK+  +   +  N   I  D   + Q+  NIL+NAI ++P GG+I +S   T 
Sbjct: 298 KMRSQDDEKKYELVRDYPINSVWIEIDTDKMTQVIDNILNNAIKYSPDGGKITVSMKTTD 357

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
           ++ + L ++D G+G+   +L K    F ++  ++     GTGLGL +AK ++  + G  +
Sbjct: 358 DQMI-LSIKDQGLGIPKQDLPKIFDRFYRVDRARSRAQGGTGLGLAIAKEIIKQHNGFIW 416

Query: 794 IFSTPAKGTLIEIIFP 809
             S   KG+   I+ P
Sbjct: 417 AKSEYGKGSTFTIVLP 432


>gi|127511913|ref|YP_001093110.1| multi-sensor hybrid histidine kinase [Shewanella loihica PV-4]
 gi|126637208|gb|ABO22851.1| PAS/PAC sensor hybrid histidine kinase [Shewanella loihica PV-4]
          Length = 1171

 Score =  316 bits (811), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 91/417 (21%), Positives = 168/417 (40%), Gaps = 30/417 (7%)

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINK--RKMEIEVMQLCSILEATSDGIAIINR 470
           +          F   +    +    +  R  +  + +  E  Q  +I++ + D I  +  
Sbjct: 325 LAVSRRISVYSFMLAVGVLFLFVVIILGRSARSSQALAKEKAQSAAIIDGSKDAIIGVGT 384

Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530
            G++ + NRA   LFGY  +      F   L       +   +++    +    L+    
Sbjct: 385 SGVVNNWNRAAELLFGYDADYAKG-HFINQLALLPEVDLAALVSKANQGNKTLNLDAELP 443

Query: 531 GSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQE-----------KNKLSHAK 575
            +  E +++ L + +  +   +      ++ + D+S  KQ            + K++   
Sbjct: 444 LN--EGRIVDLYVSVSPILGENKHALGVAIIIRDVSIEKQAAKKIQLVNAELEKKVAIRT 501

Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
           +  +K S  KS F++ +SHE+RTPL  I+G   +++          R   Y    + S N
Sbjct: 502 QELQKASLVKSSFISNISHEMRTPLNGIVGTLNLVRKDSL----TERQARYLEMAEVSVN 557

Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF-ANNI 694
            +  ++ND+LD+SKIE+GK++L     +    +    S + + A EK I           
Sbjct: 558 TLSALINDVLDLSKIEAGKLDLDMSSFNPLNLIESVCSSMAVKAQEKGIEFVIDVVDLRC 617

Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIIST--THTSNEEVIL--RVRDTGVGMTN 750
             + +D   + QI  N+++NAI FT  G  I +          E+     V DTG+G+  
Sbjct: 618 QSVDSDPHRITQILTNLINNAIKFTDHG-YIKVRAHSRLRETGELEFICEVSDTGIGIAE 676

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
               K    F Q  +S   +  GTGLGL + K + +   GK    S   +G+     
Sbjct: 677 ENQAKLFTAFSQATSSIAAQYGGTGLGLSICKELSELLNGKMSFESHKGQGSCFIFT 733


>gi|288940436|ref|YP_003442676.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
 gi|288895808|gb|ADC61644.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
          Length = 729

 Score =  316 bits (811), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 104/488 (21%), Positives = 188/488 (38%), Gaps = 37/488 (7%)

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH-TIQWNRENSLAMTFIPF 418
           I  A  L +L  A + +    I    L       +   A     +  +      +  I  
Sbjct: 108 ILTAAVLGSLFHALRRAGRVRIDVWTLALF-GLLVHVLALAWIPLLPSDWRQNVLEQIAV 166

Query: 419 EKANQFPENMPQNGIEPEDVDTRI-NKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
                 P  M   G+  +  + R+  +R +  E   L +++    D + + + +G+ L+ 
Sbjct: 167 PYLTVLPLLMVVLGLLLQSQEQRVDGERALAHERAFLATLVRTIPDLVWLKDPKGVYLAC 226

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
           N+   + FG    +I+ +    FL ++       Y  + +      T  + T+    +  
Sbjct: 227 NQRFERFFGVTQTEIIGRTDRDFLPEHEADFFRQYDLKAIEAGGPCT-NEETITFADDGH 285

Query: 538 LLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSH--------- 584
              L  I   +   S           DI+  +Q + +L   +   E              
Sbjct: 286 QERLETIKTPMYDDSGRLVGVLGIARDITALRQAETELQRRRDHLEALVEARTAELAAAR 345

Query: 585 ---------KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
                    KS+FLA +SHEIRTPL AI G + +I+     P    R     + ++ +  
Sbjct: 346 DAAEAANRAKSEFLANMSHEIRTPLNAISGMAHLIRQAGLAPDQTAR----LDKLEAAST 401

Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695
            +L+++N +L+ SKIE+GK+ L   P+ ++  V   ++++   A  K +   +      P
Sbjct: 402 HLLNLINAILEFSKIEAGKLTLESAPLQVERLVERVVAMLHERAAAKGLEFVSEVGVLPP 461

Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH--TSNEEV--ILRVRDTGVGMTNY 751
            +L D   ++Q  +N  +NAI FT  G +I +           V     V DTG G+   
Sbjct: 462 YLLGDATCLQQALINYAANAIKFTRQG-RITLRVALVEEDAGSVLLRFEVEDTGTGIEPE 520

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI--IFP 809
            L +    F Q  NS   +  GTGLGL + + +     G+    STP  G+         
Sbjct: 521 VLPRLFTAFEQGDNSITRQHGGTGLGLAITQRLARLMGGEAGADSTPGVGSRFWFSARLT 580

Query: 810 LYDTSHPH 817
             +++ P 
Sbjct: 581 KGESAEPE 588



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 46/430 (10%), Positives = 101/430 (23%), Gaps = 54/430 (12%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNT- 142
             W  D  G     ++   +  G    ++IG    D       D         ++     
Sbjct: 213 LVWLKDPKGVYLACNQRFERFFGVTQTEIIGRTDRDFLPEHEADFFRQYDLKAIEAGGPC 272

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
              +T  +  +G    +  +    P+Y  +    G  G  I              +R   
Sbjct: 273 TNEETITFADDGHQERL--ETIKTPMYDDSGRLVGVLG--IARDITALRQAETELQRRRD 328

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV------------SSLTEYYAHK 250
               L E +    +  ++  +  ++        M +++                   A  
Sbjct: 329 HLEALVEARTAELAAARDAAEAANRAKSEFLANMSHEIRTPLNAISGMAHLIRQAGLAPD 388

Query: 251 DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310
                 +     T   + +    +F  I   + T +     ++   +     L  R    
Sbjct: 389 QTARLDKLEAASTHLLNLINAILEFSKIEAGKLTLESAPLQVERLVERVVAMLHERAAAK 448

Query: 311 -----------LSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANP-------SFLLLT 352
                            +   L    ++           G +            S LL  
Sbjct: 449 GLEFVSEVGVLPPYLLGDATCLQQALINYAANAIKFTRQGRITLRVALVEEDAGSVLLRF 508

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP-----VMLYRSDRTCIAASARLHTIQWNR 407
           + +          L  L  A +  DN+  +      + L  + R                
Sbjct: 509 EVEDTGTGIEPEVLPRLFTAFEQGDNSITRQHGGTGLGLAITQRLARLMGGEAGADSTPG 568

Query: 408 -ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM---------EIEVMQLCSI 457
             +    +    +  +  PE              +  +R +         EI    L  +
Sbjct: 569 VGSRFWFSARLTKGESAEPEAPVSENAGTRLRRDQAGRRVLLVEDEPINQEIAREMLKDV 628

Query: 458 ---LEATSDG 464
              ++   DG
Sbjct: 629 GLCVDTADDG 638


>gi|152987294|ref|YP_001346367.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           PA7]
 gi|150962452|gb|ABR84477.1| probable sensor/response regulator hybrid [Pseudomonas aeruginosa
           PA7]
          Length = 1418

 Score =  316 bits (811), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 109/662 (16%), Positives = 226/662 (34%), Gaps = 48/662 (7%)

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS--LTE 245
           R      A  +                ++++    D           R +  V    +  
Sbjct: 334 RQRRRREAATQARLAAIVGNSADGIIGAALDGTITDWNRGAEALFGYREEEAVGRRVVDL 393

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
                 +  + +    +   E  +         + +          + +           
Sbjct: 394 LVPPSKESEELDILARIARNEQVVSFDTVRRHQDGHLLDVAVTVSPILDGEGRVVGASKT 453

Query: 306 RNHPSLSAYFDEGENLTPETVDK-------------------CPIP-----FFVYSHGNL 341
               S     +         ++                               +   G +
Sbjct: 454 VRDISAKKAAEARIRELNAGLEHQVAERTAELRRLNVLLGSVLQAASEVSIITLDRDGII 513

Query: 342 FYANPSFLLLTKYKSVDDIEIAGGL----STLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397
              N     +  Y++ + +             L A           V++ R++R    A 
Sbjct: 514 SGFNLGAERMLGYRAEEVVGKVSPTLLHSERELLARGRELGEQGFRVLVARAEREG--AE 571

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
            R  T      + L++T       ++        GI  +  + R  +R+M     QL   
Sbjct: 572 TREWTYLRKDGSPLSVTLSVTVLRDEAGAINGYLGIAVDVTEWRNAEREMAAARDQLQMA 631

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFG----YPVEDILRKPFTVFLEQNTPSVMNHYL 513
            +    GI         L  N  + +L+G         ++ + +   L           L
Sbjct: 632 ADVARLGIWRWTLADDSLQWNERMCELYGQPLALREGGLVYEHWRSRLHPEDLERTEASL 691

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKNKL 571
              +       +    L      + +     +++    +    +    DI+  +Q + +L
Sbjct: 692 RAAVEGRGNYDVIFRVLLPDGGIRFIQAGAQVERDADGTPLQVTGINIDITSDQQLQARL 751

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
             AK+ A+  S+ KS FLA +SHEIRTP+ A++G  ++ +        N R  +Y +   
Sbjct: 752 REAKEQADAASAAKSSFLANMSHEIRTPMNAVLGMLQLARQTDL----NERQRDYLDKAS 807

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
            +   +L ++ND+LD SKIE+GK+ L   P  L+  + +   ++     +K + +     
Sbjct: 808 SAATSLLGLLNDILDYSKIEAGKLLLEMHPFELEPLMQDLAVVLSGNQGDKDVEVIFDID 867

Query: 692 NNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDTGV 746
             +P  ++ D   ++QI +N+  NA+ FT + G +++S    +++     + + V DTG+
Sbjct: 868 PELPSAVVGDRLRLQQILINLAGNALKFT-AHGHVLVSLRRLAHDAHRVGLRVLVADTGI 926

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G++  + ++  + F Q   S   R  GTGLGL + K +VD   G+  + S+P  G+    
Sbjct: 927 GISAEQQQRIFEGFTQAEASTSRRFGGTGLGLFICKRLVDLMGGRLQVESSPGSGSRFWF 986

Query: 807 IF 808
             
Sbjct: 987 DL 988



 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 66/523 (12%), Positives = 140/523 (26%), Gaps = 61/523 (11%)

Query: 97  EISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTN 156
            ++++  +       +++   +    ++         G LL        +          
Sbjct: 34  LVNQQQARAALEREAELVAEAVTRRIELYQYGLRGVRGALLTAGEAHIDRELFRR----- 88

Query: 157 LYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSS 216
                          +REF G RGFG +      ++   LG+            +     
Sbjct: 89  --------YSLTRDIDREFPGARGFGFIRRVAAADEAGFLGQARADGQPEFRIQQLTPHD 140

Query: 217 VEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFH 276
            E+                +     +L    A + +  +  +  L + +           
Sbjct: 141 GERYVIQYIEP--------LARNDQALGLDIASETNRREAARAALESGQVRLTGPITLVQ 192

Query: 277 TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY 336
              L Q +       L    +      +          +     LT E +   PI     
Sbjct: 193 ASGLRQQSF----LILMPIYRSGTTPPAGAQRELEGFGWSYAPLLTSEVLAGLPI----- 243

Query: 337 SHGNLFYANPS-FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIA 395
                   N +  L L+                     +L      + +          A
Sbjct: 244 -------DNAAIHLELSDVTGDGAAVPFFVNGAAAPGQRLFGQELQREIYGRHWQMQFSA 296

Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
               +  +       L +             N    G        R  +R+      +L 
Sbjct: 297 LPLFVQRLHQPSPRILFLAGGLVSLLLAALVNAGALG--------RQRRRREAATQARLA 348

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS-VMNHYLT 514
           +I+  ++DGI     +G I   NR    LFGY  E+ + +     L   +        L 
Sbjct: 349 AIVGNSADGIIGAALDGTITDWNRGAEALFGYREEEAVGRRVVDLLVPPSKESEELDILA 408

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNK 570
            I      Q +   T+   ++  LL + + +  +       +    T+ DIS  K  + +
Sbjct: 409 RIARN--EQVVSFDTVRRHQDGHLLDVAVTVSPILDGEGRVVGASKTVRDISAKKAAEAR 466

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
           +       E + + ++        E+R  L  ++G      ++
Sbjct: 467 IRELNAGLEHQVAERTA-------ELRR-LNVLLGSVLQAASE 501



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 34/401 (8%), Positives = 92/401 (22%), Gaps = 46/401 (11%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTWYGKTTL 149
            G + + +       G    + +G R+ D+      +    + +  + + +      T  
Sbjct: 364 DGTITDWNRGAEALFGYREEEAVGRRVVDLLVPPSKESEELDILARIARNEQVVSFDTVR 423

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
              +G  L V + ++  PI        G      V          A  + L+    H   
Sbjct: 424 RHQDGHLLDVAVTVS--PILDGEGRVVGASK--TVRDISAKKAAEARIRELNAGLEHQVA 479

Query: 210 IKKGHSSVEKEKYDIFSQQSPPP----------------------HLRMKNKVSSLTEYY 247
            +               Q +                           R +  V  ++   
Sbjct: 480 ERTAELRRLNVLLGSVLQAASEVSIITLDRDGIISGFNLGAERMLGYRAEEVVGKVSPTL 539

Query: 248 AHKDDVLKTEKYPL----------LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297
            H +  L      L              E +   +  +   + +  +       L++ + 
Sbjct: 540 LHSERELLARGRELGEQGFRVLVARAEREGAETREWTYLRKDGSPLSVTLSVTVLRDEAG 599

Query: 298 ESFEYLSHRNHPSLSAYFDEG----ENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLT 352
               YL      +     +       +      D   +  + +    +    N     L 
Sbjct: 600 AINGYLGIAVDVTEWRNAEREMAAARDQLQMAADVARLGIWRWTLADDSLQWNERMCELY 659

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
                  +   G +     +    ++       L  +             +  +      
Sbjct: 660 GQPL--ALREGGLVYEHWRSRLHPEDLERTEASLRAAVEGRGNYDVIFRVLLPDGG-IRF 716

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
           +      + +     +   GI  +    +  + ++     Q
Sbjct: 717 IQAGAQVERDADGTPLQVTGINIDITSDQQLQARLREAKEQ 757



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 25/255 (9%), Positives = 62/255 (24%), Gaps = 24/255 (9%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIG-------MRLCDVSDILHIDPNNHIGDLLKRQN 141
           +D  G +   +    + +G  A +++G           ++              L+ R  
Sbjct: 507 LDRDGIISGFNLGAERMLGYRAEEVVGKVSPTLLHSERELLARGRELGEQGFRVLVARAE 566

Query: 142 TWYGKTTLW---PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
               +T  W     +G+   + + L+   +       +G+ G  +        +      
Sbjct: 567 REGAETREWTYLRKDGSP--LSVTLSVTVLRDEAGAINGYLGIAV--DVTEWRNAEREMA 622

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP-------PPHLRMKNKVSSLTEYYAHKD 251
               +     ++ +          D              P  LR    V        H +
Sbjct: 623 AARDQLQMAADVARLGIWRWTLADDSLQWNERMCELYGQPLALREGGLVYEHWRSRLHPE 682

Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTI--NLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
           D L+  +  L  + E        F  +  +      +      ++      +        
Sbjct: 683 D-LERTEASLRAAVEGRGNYDVIFRVLLPDGGIRFIQAGAQVERDADGTPLQVTGINIDI 741

Query: 310 SLSAYFDEGENLTPE 324
           +             E
Sbjct: 742 TSDQQLQARLREAKE 756


>gi|193215712|ref|YP_001996911.1| PAS/PAC sensor hybrid histidine kinase [Chloroherpeton thalassium
           ATCC 35110]
 gi|193089189|gb|ACF14464.1| PAS/PAC sensor hybrid histidine kinase [Chloroherpeton thalassium
           ATCC 35110]
          Length = 798

 Score =  316 bits (811), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 93/541 (17%), Positives = 182/541 (33%), Gaps = 39/541 (7%)

Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFL 349
           L   ++                     E       +  P   +  S   G   Y +P+  
Sbjct: 141 LDGKARIIAIVRDIHKRKKAVEALRFSEEKYRRLAENSPDMIYHMSLPDGTYEYVSPAAE 200

Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
            +  Y      E        +      D+       L    +  +  S     I  + ++
Sbjct: 201 EIFGYPPQTFYENPF----FIQQVIHPDSQDFFETQLQELLQCHLPPSYEYRIIHKD-QH 255

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469
              +        N+  + +   GI  +    +  +     E  +  +I++   DG  + +
Sbjct: 256 VRWLNQRSVGVRNENGQLIAIEGIVTDVTGRKEAEAAFHKEERKYKAIIQTAIDGFWLTD 315

Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
            +G IL  N A +K+ GY  E++           N+P  +   +  +      +     T
Sbjct: 316 LQGKILEINEAYAKMSGYNQEELRGMNICDLDAINSPLEIATRIETLFRQGHDR---FET 372

Query: 530 LGSTKEEKLLSLRIIIKKLPFSSCYSLTM-HDISEWKQEKNKLSHAKKIAEKESSHKS-- 586
               K+  +  + +  + L   +   +    DIS +K+ + +    +    +    +S  
Sbjct: 373 QHRRKDGSVYDVEVSGQYLANENGKLVIFLRDISPYKRAEKEKEALQAQLLQAQKMESIG 432

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
                V+H+    L+ I G++E+   +       P+       I ++     D+   LL 
Sbjct: 433 RLAGGVAHDFNNMLSVIQGYAEMALEKMH---PTPKLYNALLEIRKAAQRSADVTRQLLA 489

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706
            ++    K  +  + + L++ V   + ++Q     + I +      N+  +  D   + Q
Sbjct: 490 FAR----KQTIAPKVLDLNQTVGNMLKMIQRLI-GEDIHLTWLPGVNLWPLKIDPSQIDQ 544

Query: 707 IALNILSNAIHFTPSGGQIIISTTHT--------------SNEEVILRVRDTGVGMTNYE 752
           I +N+  NA       G++ I T                     V+L V D G GM    
Sbjct: 545 ILVNLCVNARDAIHGVGKLTIETETASINEEYCKHHLGFFPGNFVVLSVSDDGCGMDKET 604

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
           L K  +PF           +GTGLGL     +V  N G   ++S P  GT  +I FP Y 
Sbjct: 605 LRKLFEPFFTTKGMD----KGTGLGLATVYGIVKQNKGFINVYSEPNIGTTFKIYFPCYQ 660

Query: 813 T 813
           +
Sbjct: 661 S 661



 Score =  105 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 50/412 (12%), Positives = 114/412 (27%), Gaps = 49/412 (11%)

Query: 282 QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY--SHG 339
              KK  +  L+N  +E    L    H        +         D      F++    G
Sbjct: 6   LMPKKPTYEELENRLQELERAL--STHKETQNSLQKLMANYHTIFDVANDAIFIHALEDG 63

Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399
            +   N   L +  Y   + ++++    +    P                +         
Sbjct: 64  QILDVNQKMLEMYGYTKEEALQLSVESFSKGLPPYTHAEAQKYIQKAAMGEPQIFEWE-- 121

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459
             + + N E       +     +          I  +    +     +     +   + E
Sbjct: 122 --SKKKNGEVFWTDVSLKKVILDGKA---RIIAIVRDIHKRKKAVEALRFSEEKYRRLAE 176

Query: 460 ATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFT--VFLEQNTPSVMNHYLTEI 516
            + D I  ++  +G     + A  ++FGYP +     PF     +  ++       L E+
Sbjct: 177 NSPDMIYHMSLPDGTYEYVSPAAEEIFGYPPQTFYENPFFIQQVIHPDSQDFFETQLQEL 236

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS----LTMHDISEWKQEKNKLS 572
           L   L  + E   +   K++ +  L      +   +         + D++  K+ +    
Sbjct: 237 LQCHLPPSYEYRII--HKDQHVRWLNQRSVGVRNENGQLIAIEGIVTDVTGRKEAEAAFH 294

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG-NPRYIEYANYID 631
             ++  +                     TAI GF   + + +   L  N  Y + + Y  
Sbjct: 295 KEERKYKAIIQ-----------------TAIDGF--WLTDLQGKILEINEAYAKMSGYNQ 335

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
                +   + DL      ++    L      ++    +     +     K 
Sbjct: 336 EELRGMN--ICDL------DAINSPLEI-ATRIETLFRQGHDRFETQHRRKD 378



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/361 (9%), Positives = 89/361 (24%), Gaps = 34/361 (9%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151
            G + ++++++ +  G    + + + +   S  L    +      +++      +   W 
Sbjct: 62  DGQILDVNQKMLEMYGYTKEEALQLSVESFSKGLPPYTHAEAQKYIQKAAMGEPQIFEWE 121

Query: 152 ---IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                G   +  + L  + +  + R         IV             +  ++K+  L 
Sbjct: 122 SKKKNGEVFWTDVSLKKVILDGKARII------AIVRDIHKRKKAVEALRFSEEKYRRLA 175

Query: 209 EIKKGHSSVEKEKYDIFSQQSP--------PPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
           E               +   SP        PP    +N        +    D  +T+   
Sbjct: 176 ENSPDMIYHMSLPDGTYEYVSPAAEEIFGYPPQTFYENPFFIQQVIHPDSQDFFETQLQE 235

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE----YLSHRNHPSLSAYFD 316
           LL         +      + +     Q    ++N + +                  A F 
Sbjct: 236 LLQCHLPP-SYEYRIIHKDQHVRWLNQRSVGVRNENGQLIAIEGIVTDVTGRKEAEAAFH 294

Query: 317 EGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLS-------- 367
           + E      +      F++    G +   N ++  ++ Y + +++               
Sbjct: 295 KEERKYKAIIQTAIDGFWLTDLQGKILEINEAYAKMSGY-NQEELRGMNICDLDAINSPL 353

Query: 368 --TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
                        +        R D +          +       +              
Sbjct: 354 EIATRIETLFRQGHDRFETQHRRKDGSVYDVEVSGQYLANENGKLVIFLRDISPYKRAEK 413

Query: 426 E 426
           E
Sbjct: 414 E 414



 Score = 58.1 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 30/304 (9%), Positives = 71/304 (23%), Gaps = 10/304 (3%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRL--CDVSDILHID-PNNHIGDLLKRQNTWYGKT 147
             G  + +S    +  G               V      D     + +LL+       + 
Sbjct: 188 PDGTYEYVSPAAEEIFGYPPQTFYENPFFIQQVIHPDSQDFFETQLQELLQCHLPPSYEY 247

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
            +   +       ++  ++ + + N +     G  IV       +  A   + ++K+  +
Sbjct: 248 RIIHKD--QHVRWLNQRSVGVRNENGQLIAIEG--IVTDVTGRKEAEAAFHKEERKYKAI 303

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
            +       +   +  I         +   N+           D +    +         
Sbjct: 304 IQTAIDGFWLTDLQGKILEINEAYAKMSGYNQEELRGMNICDLDAINSPLEIATRIETLF 363

Query: 268 SLPEQ--EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
                  E  H          +  G    N             P   A  ++        
Sbjct: 364 RQGHDRFETQHRRKDGSVYDVEVSGQYLANENGKLVIFLRDISPYKRAEKEKEALQAQLL 423

Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
             +        + G     N    ++  Y  +  +E       L +A       A +   
Sbjct: 424 QAQKMESIGRLAGGVAHDFNNMLSVIQGYAEM-ALEKMHPTPKLYNALLEIRKAAQRSAD 482

Query: 386 LYRS 389
           + R 
Sbjct: 483 VTRQ 486



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/138 (15%), Positives = 46/138 (33%), Gaps = 7/138 (5%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK 146
           W  D  G + EI+E   K  G    ++ GM +CD+  I          + L RQ     +
Sbjct: 312 WLTDLQGKILEINEAYAKMSGYNQEELRGMNICDLDAINSPLEIATRIETLFRQGHDRFE 371

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
           T     +G+     ++++   + + N +   F     +             + L  +   
Sbjct: 372 TQHRRKDGSVY--DVEVSGQYLANENGKLVIF-----LRDISPYKRAEKEKEALQAQLLQ 424

Query: 207 LHEIKKGHSSVEKEKYDI 224
             +++          +D 
Sbjct: 425 AQKMESIGRLAGGVAHDF 442


>gi|77919960|ref|YP_357775.1| two component sensor histidine kinase [Pelobacter carbinolicus DSM
            2380]
 gi|77546043|gb|ABA89605.1| PAS/PAC sensor signal transduction histidine kinase [Pelobacter
            carbinolicus DSM 2380]
          Length = 1154

 Score =  316 bits (811), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 121/765 (15%), Positives = 264/765 (34%), Gaps = 68/765 (8%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            ++  G +   +    K  G    +M+G  L  +      + +         +        
Sbjct: 424  VNEQGLVVVFNPAAEKMFGYTEEEMVGQPLDRLIPEHLRERHRQNLVSFFTRAHESDLLG 483

Query: 149  L------WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
                       G   YV + L+     ++ +  +G      +             +R ++
Sbjct: 484  QNIELPALRSNGEQFYVELSLSLWQQGNKLKAIAG------LRDVTERRQADEELRRNEE 537

Query: 203  KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL--RMKNKVSSLTEYYAHKDDVLKTEKYP 260
            ++  L + +            +         L  +   ++          ++V  +    
Sbjct: 538  RYRALVQTQAEAVCRWLPDTTLTYVNEAYCRLFKKKPEELLGRKFIDRMSEEVRSSMDEH 597

Query: 261  LLT--SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY----LSHRNHPSLSAY 314
            + T  +   +L  +      + + +  +     +     E  E     L       +   
Sbjct: 598  IRTLLNNPGTLYHETPILQDDGSSHWYRWSNTAIVGELGEVTEVQAVGLDITQRKKVEED 657

Query: 315  FDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
              E E+   +T D  P   F     G L +AN   L +      D  +       L    
Sbjct: 658  LRESESRFRDTADLLPQSVFETDTLGRLTFANRVTLEMIGCDDADLQQGISVFDLL---- 713

Query: 374  KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
              SD +A+            I A+  L   +      + ++  P          +   G+
Sbjct: 714  ASSDRDALTDAFQSVLGGETINANECLIEARNGFRFKVMISVSPMVIK---GRIVGVRGV 770

Query: 434  EPEDVDTRINKRKMEIEV-------MQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
              +  D  + ++ +            +  ++L+   D IA+I  +  +L  N + + + G
Sbjct: 771  AIDISDRIVAEQALRQSEKKFKRLYREYQTLLDGIPDSIALIAPDRTVLRANLSTANMLG 830

Query: 487  YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
            YP+ +I  K         +  +    +       ++Q      +  T++ +   +R    
Sbjct: 831  YPIREIPGKKCCTLWGNCSCHLEECPVMASFRTGVQQ----KVVFKTQDGRSWEVRTFPV 886

Query: 547  KLPFSSCYSLT--MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
            K    +   +    +DI+   Q + +     ++A        +  A V+HEI  P+  II
Sbjct: 887  KDKVGNTVQVIRYTNDITRQIQLREESLRTGQLA-----SLGELAAGVAHEINNPINGII 941

Query: 605  GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
             +++++ +       +   ++    I   G  V +IV +LL  ++        H + V+L
Sbjct: 942  NYAQLLADSLDIEKDD---LDILRGIIEEGERVANIVRNLLAFARAR----KEHKDRVAL 994

Query: 665  DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI-----HF- 718
             + ++ +++L +    +  I ++     ++P ++A  + ++Q+ LN+LSNA       + 
Sbjct: 995  WDTLACSLALTESQLRKDGIHLQVEVPPDLPEVVAHAQEIQQVLLNLLSNARYALNKKYP 1054

Query: 719  -TPSGGQIII--STTHTSNEE-VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
                   ++I  ST     ++ V L VRD G G+    L K + PF     S    GEGT
Sbjct: 1055 TVHPDKTLLIKASTCMEQGQQMVHLSVRDQGTGIPESSLHKILDPFYTTKPS----GEGT 1110

Query: 775  GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819
            GLGL ++  ++  + G+  I S     T++    P   +   HD 
Sbjct: 1111 GLGLSISHGIIKDHHGEIVIDSKEGHYTMVTFALPAA-SEETHDS 1154



 Score =  112 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 63/475 (13%), Positives = 133/475 (28%), Gaps = 30/475 (6%)

Query: 111 FKMIGMRLCDVSDILHIDPNNH-IGDLL--KRQNTWYGKTTLWPIEGTNLYVPIDLAALP 167
              +G    D+      D     +   L  K + T    T    +      VPI L A+ 
Sbjct: 212 AAEMGRHFPDLDYEFVADKTMSGLRSKLSVKGEGTVVLTTLGGLLGPDGGPVPIPL-AIQ 270

Query: 168 IYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ 227
           + S   +F       I+ +         LG  +   F+        H  ++K        
Sbjct: 271 MLSEAGKFK------ILTMGTNYLTDGVLGGSVVDGFAQ--GQAAAHVFMDKVLGLDTIG 322

Query: 228 QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287
           +  P  +     V S+          LK  + PL    + S+          +  +    
Sbjct: 323 KEGPFEVNTTRYVFSV--------AALKRWQIPLSILPQGSMLLDGTPQVFGVRSHLVLG 374

Query: 288 YFGTLQNNSKESFEYLSHRNHPSL-SAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYAN 345
               L          L       L        E      V         V   G +   N
Sbjct: 375 GLLFLLLQIILLILVLPRLRSLKLIRQSLTWSEKRFQAVVRVISDALIGVNEQGLVVVFN 434

Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS-ARLHTIQ 404
           P+   +  Y   + +     L  L+       +         R+  + +      L  ++
Sbjct: 435 PAAEKMFGYTEEEMVGQP--LDRLIPEHLRERHRQNLVSFFTRAHESDLLGQNIELPALR 492

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
            N E       +      Q    +       +  + R    ++     +  ++++  ++ 
Sbjct: 493 SNGEQFYVELSLSLW---QQGNKLKAIAGLRDVTERRQADEELRRNEERYRALVQTQAEA 549

Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
           +     +  +   N A  +LF    E++L + F   + +   S M+ ++  +L+      
Sbjct: 550 VCRWLPDTTLTYVNEAYCRLFKKKPEELLGRKFIDRMSEEVRSSMDEHIRTLLNNPGTLY 609

Query: 525 LEKITLGSTKEEKLLSLRII--IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI 577
            E   L                + +L   +       DI++ K+ +  L  ++  
Sbjct: 610 HETPILQDDGSSHWYRWSNTAIVGELGEVTEVQAVGLDITQRKKVEEDLRESESR 664



 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/279 (10%), Positives = 82/279 (29%), Gaps = 21/279 (7%)

Query: 69  DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM-IGMRLCDVSDILHI 127
           +SE+ F            +  D  G L   +    + IG     +  G+ + D+      
Sbjct: 660 ESESRFRDTADLLPQS-VFETDTLGRLTFANRVTLEMIGCDDADLQQGISVFDLLASSDR 718

Query: 128 DP-NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHV 186
           D   +    +L  +     +  +    G      + ++  P+  +     G RG  I   
Sbjct: 719 DALTDAFQSVLGGETINANECLIEARNG--FRFKVMISVSPMVIK-GRIVGVRGVAI--D 773

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ---------QSPPPHLRMK 237
                      ++ +KKF  L+   +       +   + +           +        
Sbjct: 774 ISDRIVAEQALRQSEKKFKRLYREYQTLLDGIPDSIALIAPDRTVLRANLSTANMLGYPI 833

Query: 238 NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297
            ++          +     E+ P++ S  + + ++  F T +    + +     +++   
Sbjct: 834 REIPGKKCCTLWGNCSCHLEECPVMASFRTGVQQKVVFKTQDG--RSWEVRTFPVKDKVG 891

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPET--VDKCPIPFF 334
            + + + + N  +      E    T +   + +      
Sbjct: 892 NTVQVIRYTNDITRQIQLREESLRTGQLASLGELAAGVA 930


>gi|311067865|ref|YP_003972788.1| two-component sensor histidine kinase [Bacillus atrophaeus 1942]
 gi|310868382|gb|ADP31857.1| two-component sensor histidine kinase [Bacillus atrophaeus 1942]
          Length = 739

 Score =  316 bits (811), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 100/739 (13%), Positives = 236/739 (31%), Gaps = 77/739 (10%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCD-VSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150
              + + +E   + +     ++    + D +  I   +    I     +   W       
Sbjct: 51  EMKIVQANEAAARMLQVKPEELKARSVLDFLFAIPEEELVIAIKKFFNKGFLWKEVPIRL 110

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
               T     I+  A      +        F ++                ++ F  L + 
Sbjct: 111 DSGATKY---IEFLAKKESGED------TFFVVMRDISSKKILEREFSMNEQLFKDLFDR 161

Query: 211 KKGHSSVEKEKYDIFSQQSPP------PHLRMKN-KVSSLTEYYAHKDDVLKTEKYPLLT 263
                 +   +                    + +       +    KD     E      
Sbjct: 162 AVDGIVLFDREGCFIDANLSFCKSFEIGQNELSHLSFGEFIDKTNKKDFQSIWETIHRKG 221

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
             +  LP +         Q   +    +   N              S+     + E    
Sbjct: 222 KAKGELPVRLRS----GGQKLFEFTITSNIINGFYMSIMRDITEKRSMEIQLFKSEERFR 277

Query: 324 ETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD----- 377
           E  +       ++   G +  AN S   + +   ++ +        L+ + +        
Sbjct: 278 EIFENAMDAILIWSDDGRIVKANQSACKIFEL-PMNQLVQRNLCDFLVVSNQKYRCTKKK 336

Query: 378 ----NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
                     ++    +                 ++                       I
Sbjct: 337 YEKFGEIRDELLFQMGNGQFKELEFTSKRTILEGQH---------------------LTI 375

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
                D +  ++++    ++   +   + DG  + + +  I+  N   S + G   E+I 
Sbjct: 376 FRNVSDRKRMEKELRESELKFRKVFNGSMDGNVLFDNKYRIIDANPLASDILGLSHEEIK 435

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553
           +      +       +     +I   ++   +  +  G    +   S +  I +      
Sbjct: 436 KHSLLDIISAYDIENLTSSARQINLEEMDNEIPFLLSGKENRKLEFSFKRHIIQNMN--- 492

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
                 D++E K+ + +L  +  +         +  A ++HEIR P+TA+ GF ++++  
Sbjct: 493 -LAIFKDVTERKELEERLRKSDTLHV-----VGELAAGIAHEIRNPMTALKGFIQLLQGS 546

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
             G      Y  Y N I      +  I+ + L ++K ++    + +E  ++ + + + + 
Sbjct: 547 VEG-----DYALYFNVITSELKRIESIITEFLILAKPQA----IMYEEKNVTDIMQDTMD 597

Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
           L+   AN   + +       IP I  +   +KQ+ +NIL NAI   P GG + +    + 
Sbjct: 598 LLHAQANLSNVQMHLDLIETIPPIYCEPNQLKQVFINILKNAIEVMPKGGNVYVKIQPSG 657

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
            + +++ ++D G+G+T  +L++  +PF         +  GTGLGL ++  +++ + GK  
Sbjct: 658 TDHILISLQDEGIGITEDKLKRLGEPFYTT------KERGTGLGLMVSYKIIEEHQGKIT 711

Query: 794 IFSTPAKGTLIEIIFPLYD 812
           + S   +GT+  +  PL  
Sbjct: 712 VESEEGRGTVFHLTLPLRQ 730



 Score = 68.5 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 51/136 (37%), Gaps = 3/136 (2%)

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
               +++ E+ Q   I+  T D I I N+E  I+  N A +++     E++  +    FL
Sbjct: 22  EENDRLKKELNQHQVIVNNTLDAIFICNKEMKIVQANEAAARMLQVKPEELKARSVLDFL 81

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDI 561
                  +   + +  +      L K             +  + KK      + + M DI
Sbjct: 82  FAIPEEELVIAIKKFFNKG---FLWKEVPIRLDSGATKYIEFLAKKESGEDTFFVVMRDI 138

Query: 562 SEWKQEKNKLSHAKKI 577
           S  K  + + S  +++
Sbjct: 139 SSKKILEREFSMNEQL 154



 Score = 42.3 bits (98), Expect = 0.30,   Method: Composition-based stats.
 Identities = 33/370 (8%), Positives = 97/370 (26%), Gaps = 36/370 (9%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D  G   + +    K+      ++  +   +  D  +      I + + R+    G+  +
Sbjct: 170 DREGCFIDANLSFCKSFEIGQNELSHLSFGEFIDKTNKKDFQSIWETIHRKGKAKGELPV 229

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGF--GIVHVNRVDNDPRALGKRLDKKFSHL 207
               G        + +  I           GF   I+              + +++F  +
Sbjct: 230 RLRSGGQKLFEFTITSNII----------NGFYMSIMRDITEKRSMEIQLFKSEERFREI 279

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPP------PHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
            E       +  +   I             P  ++  +        +++      +KY  
Sbjct: 280 FENAMDAILIWSDDGRIVKANQSACKIFELPMNQLVQRNLCDFLVVSNQKYRCTKKKYEK 339

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
                    ++  F   N      +          +    + +  +   +     E E  
Sbjct: 340 FGEIR----DELLFQMGNGQFKELEFTSKRTILEGQHLTIFRNVSDRKRMEKELRESELK 395

Query: 322 TPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
             +  +       ++ +   +  ANP    +    S ++I+    L  +      +  ++
Sbjct: 396 FRKVFNGSMDGNVLFDNKYRIIDANPLASDILGL-SHEEIKKHSLLDIISAYDIENLTSS 454

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
            + + L   D               + + +  + F       Q         I  +  + 
Sbjct: 455 ARQINLEEMDNEI--------PFLLSGKENRKLEFSFKRHIIQNMN----LAIFKDVTER 502

Query: 441 RINKRKMEIE 450
           +  + ++   
Sbjct: 503 KELEERLRKS 512


>gi|71908460|ref|YP_286047.1| PAS [Dechloromonas aromatica RCB]
 gi|71848081|gb|AAZ47577.1| PAS protein [Dechloromonas aromatica RCB]
          Length = 764

 Score =  316 bits (811), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 120/609 (19%), Positives = 239/609 (39%), Gaps = 28/609 (4%)

Query: 228 QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287
           Q    H        +L++  A +    +T  + +++ +       E    +  +   K +
Sbjct: 17  QRALGHYADVRVELALSQQEAREIVARETFHFFIISGQLPDGDGIELAKALRADGRAKAE 76

Query: 288 ---YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP----FFVYSHGN 340
                 +  ++   +    +  +        DE        V+          +V    +
Sbjct: 77  PIVLLTSSASSGLATQAEQAGVSELFRKQDIDELLRFMRHYVELLQPMRCRILYVEDSRD 136

Query: 341 LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400
                 + L       VD    A             D      V+      T +    R 
Sbjct: 137 QRALLEAQLRDWGMT-VDAFASADEAWLAF-EANDYDLVLCDVVLGGHMTGTRLINRIRR 194

Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM------EIEVMQL 454
             +       LA+T             +  +    + +     + ++      +  V + 
Sbjct: 195 LPLPKGETPVLAVTAFDNPLRRIELFQLGVDDYVQKPILAEEIRARLHNLLTRKRAVERS 254

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN-HYL 513
             +L AT+ G+ ++ ++ +I S +     +F    + +L +P ++ L +     +    +
Sbjct: 255 QMLLAATALGVVVVGQDAVIESMDDNSLDMFRPATQPVLGQPLSILLPEEKNPGLLGQMM 314

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---YSLTMHDISEWKQEKNK 570
             +++ +    L    +G   + +   + + I ++        ++L   DISE +     
Sbjct: 315 QRVMAEERISGL--KAVGQRGDGEDFPVELTIIEINSGDGVRHFALLARDISEEQALATY 372

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           L+ A + AE+    K+ FLA +SHEIRTPL AIIG + ++              +Y  +I
Sbjct: 373 LTRASEAAERAEQMKTAFLANMSHEIRTPLNAIIGMAHILSRTELDTA----QKKYVGHI 428

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
           D +G  +L ++ ++LD+SKIE+G++ L   P++++  V E +S+V   A EK + +R   
Sbjct: 429 DAAGEHLLGLITNVLDMSKIEAGRLELENIPLAVENIVFEVLSMVADQAAEKGLDVRIGE 488

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDTGVG 747
            +    ++ D   ++Q  LN +SNAI FT  G    ++I       +  +   V DTG+G
Sbjct: 489 LDAPSGLVGDPVRLRQALLNYVSNAIKFTADGSIDVRVITQAVSEDSVLLRFEVADTGIG 548

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           ++    ++    F Q  NS   R  GTGLGL + + + +   G+  + STP +G+L    
Sbjct: 549 ISAEARDEIFSAFRQADNSTTRRYGGTGLGLAITRQLAELMGGEVGVSSTPGQGSLFWFT 608

Query: 808 FPLYDTSHP 816
             L   S P
Sbjct: 609 ASLKRASAP 617


>gi|86147383|ref|ZP_01065696.1| sensor histidine kinase FexB [Vibrio sp. MED222]
 gi|85834811|gb|EAQ52956.1| sensor histidine kinase FexB [Vibrio sp. MED222]
          Length = 795

 Score =  316 bits (811), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 86/392 (21%), Positives = 169/392 (43%), Gaps = 19/392 (4%)

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
            +E E       + ++      L S ++A+ D I   N +G+    NRAV +L G   ++
Sbjct: 135 DLENEVFQRERTQLELAERTALLRSFIDASPDLIYYRNEDGVFSGCNRAVEELTGKTEKE 194

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
           ++         +     +     ++ + +   T ++        +    LR +       
Sbjct: 195 LVGLTPWDVYSKEVAQQVVETDKKVFADNQALTYDQWLEYPDGRKSYFELRKVPFYSKDG 254

Query: 552 S--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                     DI+E K+ +  L       EK S  K+ F++ +SHE+RTPL  IIG S +
Sbjct: 255 RHLGLVGFGRDITERKEHQESL-------EKASRDKTTFISTISHELRTPLNGIIGLSRM 307

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           + + +          +    I  S   + +I ND++D+ K +  K+ L   P++ ++ V 
Sbjct: 308 LLDSQLTT----EQRKQMQTIKVSAVTLGNIFNDIIDMDKFDRRKLELFPTPINFEDFVV 363

Query: 670 EAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI-II 727
           E  S+  L A +K +       +++P  +  D   ++Q+  N++SNA+ FT  GG +  +
Sbjct: 364 EIESISALMAEQKGLRFDLERLSDLPSAVEVDGTRLRQVLWNLVSNAMKFTKDGGVVMTV 423

Query: 728 STTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGEGTGLGLPLAKAMV 785
           S     +   + + V DTG+G+   E+EK    + Q+ +        GTG+GL +++ ++
Sbjct: 424 SAEIDGDFANITMEVEDTGIGIPESEIEKIFAMYYQVKSGTDNLHAVGTGIGLAVSQQLI 483

Query: 786 DANMGKFYIFSTPAKGTLIEIIF--PLYDTSH 815
           +   G   + S    G+   I    P+   + 
Sbjct: 484 NMMDGHIEVTSEEGFGSTFTISIRVPVNHDTQ 515



 Score = 45.8 bits (107), Expect = 0.030,   Method: Composition-based stats.
 Identities = 16/127 (12%), Positives = 35/127 (27%), Gaps = 5/127 (3%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTWYGKTTLW 150
            G     +  + +  G    +++G+   DV               +            L 
Sbjct: 174 DGVFSGCNRAVEELTGKTEKELVGLTPWDVYSKEVAQQVVETDKKVFADNQALTYDQWLE 233

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
             +G   Y   +L  +P YS++    G  GFG         + +   ++  +  +     
Sbjct: 234 YPDGRKSYF--ELRKVPFYSKDGRHLGLVGFG--RDITERKEHQESLEKASRDKTTFIST 289

Query: 211 KKGHSSV 217
                  
Sbjct: 290 ISHELRT 296


>gi|149922767|ref|ZP_01911192.1| sensory box sensor histidine kinase [Plesiocystis pacifica SIR-1]
 gi|149816387|gb|EDM75888.1| sensory box sensor histidine kinase [Plesiocystis pacifica SIR-1]
          Length = 783

 Score =  316 bits (811), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 124/727 (17%), Positives = 234/727 (32%), Gaps = 128/727 (17%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D  G +   +  +   +G     ++G  L ++++   +D     G  L R  +W G+  
Sbjct: 161 VDGEGRIVHANPSVQDLLG---DAIVGRGLLELAEPAFLDQLGR-GLALARDGSWIGEID 216

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           L  ++G    VP++L+            G     +    R                    
Sbjct: 217 LKRLDGET--VPVELSLAA-----GSGEGAPAVVLCRDLRESRRR--------------- 254

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
                                     ++  +V       A   + +      L     + 
Sbjct: 255 ----------------------AFEAQITAQVDRALVSSAEPREAISAACQALARGLGA- 291

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
                    I L +++      T   +S   F  LS    P  +   D G +   E V  
Sbjct: 292 ------LRVIVLTRFSGHWERWTTAQDSPPRFVPLSASTRPPSAWAQDRGMHPL-ELVGG 344

Query: 329 CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388
            P P      G     N +   L        +   GG+   L                  
Sbjct: 345 HPAPALAALLGEF---NAAATGLRM-----ALRATGGVVGYL------------------ 378

Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
                    A      W  E    +  +  + A      +                R + 
Sbjct: 379 -------VCAFDRREPWGDEELGLVATLAPQLAMGLANGLLML-----------ETRALA 420

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL-EQNTPS 507
               +   +L+ T+  +  ++ EG +++ NRA  +L G   +D   + F + +       
Sbjct: 421 AYQAR---VLDQTTVLLNSLDAEGRVVTWNRASERLVGISSDDAKGRLFGLEVARAQDLP 477

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEW 564
                 + +L       + +  +    E+  + + +  + L   S      L   D+   
Sbjct: 478 RWREMWSTLLRDG---VMAREIILLGAEDDEIPVHLEGRLLRDGSEVKGAVLVGLDLRIR 534

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           +  + ++  ++K+A           A ++HEI  PL+ ++G+S+++  +   P    +  
Sbjct: 535 RALEKQVLQSQKMA-----AVGLLAAGIAHEINNPLSGVVGYSKLLLEKPLEP----KIR 585

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           E    I  SG     IV  +L  S+ + G        V L   V   + + +       +
Sbjct: 586 EKVERIAASGERCRKIVEGVLLFSRSQQGG---ERTEVDLATLVDRVVRVGEYQWKMHNV 642

Query: 685 LIRTSFA--NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
            I            ++AD   ++Q+ LN+LSNA+   P GG I I       + VI  V 
Sbjct: 643 RILREPEQLERPLTLMADADQIEQVLLNLLSNAVDAMPRGGTIRIRLGEGEADTVIFAVS 702

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G+G+          PF     S +  G+GTGLGL ++  +V  + G   + S P +GT
Sbjct: 703 DEGMGIPEEIRHSIFDPFF----STKEIGKGTGLGLSISYGIVRDHGGDILLESQPGRGT 758

Query: 803 LIEIIFP 809
              +  P
Sbjct: 759 TFTVTLP 765



 Score = 38.9 bits (89), Expect = 4.1,   Method: Composition-based stats.
 Identities = 18/117 (15%), Positives = 39/117 (33%), Gaps = 1/117 (0%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL-E 502
           + ++E        +L   S   A+++  GI+L+ NRA++++       I  +P  +++  
Sbjct: 17  RLEVEEHERAHAQVLRGLSLPAALLDASGIVLAANRALAEVLRMDRSTIEGEPVLMWIRR 76

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH 559
            N           +      Q   +    +      L  R+   KL           
Sbjct: 77  PNEREAFGREFLGLRKRSPGQAFTRDLELAPSLGPALRFRVRAAKLDAHEVLLTFER 133


>gi|237720764|ref|ZP_04551245.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
 gi|229449599|gb|EEO55390.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
          Length = 810

 Score =  316 bits (811), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 103/513 (20%), Positives = 193/513 (37%), Gaps = 36/513 (7%)

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
               D  E +        P    +Y   G L   N   L +      ++         L 
Sbjct: 314 RLALDNSEKILRNIYKNLPAGVELYDKDGYLVDINDKELEIFGLSDKNEALGVN----LF 369

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARL----HTIQWNRENSLAMTFIPFEKANQFPE 426
           D P +      +   L   +    + +         +   R   + +        +    
Sbjct: 370 DNPNIPSEVKER---LRAKEDVNFSINYDFSKINQYVDSRRNGIINLNTKVTALYDSQNR 426

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA---IINREGIILSTNRAVSK 483
            +    I  +  +T     K++        I +    G A   ++ R+G          +
Sbjct: 427 FINYLFINIDTTETTNAYTKIQEFENLFLLIGDYAKVGFAHFNVLTRDG---YAQDTWYR 483

Query: 484 LFGYPVEDILRKPFTVFLE--QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS- 540
             G      + +   V+        +V+ +++ E+       +L K      +  K    
Sbjct: 484 NLGEKEGIPMPQVIGVYAHVVPEDQAVLKNFVGEV-KTGKATSLRKEVRVCRENGKYTWT 542

Query: 541 -LRIIIKKLPFSSCYS---LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
            + ++++               +DI+  K+ + KL  A+  AE+    KS FLA +SHEI
Sbjct: 543 SINVMVRDYRPQDGIIEMLCINYDITPLKETEQKLIIARDKAEELDRLKSAFLANMSHEI 602

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTPL AI+GFS ++              EY   +  +  L+L +++D+LD+SKIE+G  N
Sbjct: 603 RTPLNAIVGFSSLLAETD----SRSERQEYIKIVQENNELLLQLISDILDLSKIEAGTFN 658

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716
             +  V ++E  +E I  + +    K + +          I  D     Q+  N ++NA+
Sbjct: 659 FVYTNVDVNETCAEIIKSMSMKV-SKGVELIFEEPFPECYIYTDKNRFTQVISNFINNAL 717

Query: 717 HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
            FT  G  I +     S++++   VRDTG+G+   + +   + F ++        +GTGL
Sbjct: 718 KFTQQG-CITLGYEQVSHQKIKFYVRDTGMGIPEEKQKSVFERFVKLNTF----VQGTGL 772

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GL + K++V    G+  + ST   G+      P
Sbjct: 773 GLSICKSIVSQMGGEIGVDSTEGVGSCFWFTHP 805


>gi|255533423|ref|YP_003093795.1| PAS sensor protein [Pedobacter heparinus DSM 2366]
 gi|255346407|gb|ACU05733.1| PAS sensor protein [Pedobacter heparinus DSM 2366]
          Length = 656

 Score =  316 bits (811), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 110/513 (21%), Positives = 217/513 (42%), Gaps = 34/513 (6%)

Query: 315 FDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
            D+      + ++  P+  F     GN  + N  +  ++     + +   G +S + +  
Sbjct: 7   SDKKLAEIQKILEISPMGAFQADTVGNCLFLNRQWENISGLSVEESL-GKGWMSIVYEDD 65

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
            +  NN +K VM    +         ++ I    E    +        + +       G 
Sbjct: 66  IVLINNLLKDVMAEGKEIFDF-----VYRIHHPSEGLRQLKVNAKFIFDDYGVISYYIGF 120

Query: 434 EPEDVDTRINK---RKMEIEVMQLCSILEATSDGIAIINREGII--------LSTNRAVS 482
             +  D   ++   ++++  + +   IL+ + +    ++  G          +   + V 
Sbjct: 121 LEDITDRTQSELAFQEIKQNLERSNLILDVSQE----LSTTGGWEFNLLTGEVFWTKQVY 176

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
           ++ G   +  +     V                  +++ +   +      T       +R
Sbjct: 177 EINGVDEQTFVPTFEGVLSRYEEGYAQIMEQQVKEAIEKQIPYDLELRLCTPAGVRKWVR 236

Query: 543 IIIKKLPFSSCYSLT---MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
            +   +   +   +    + DI++ K+ + +L  AK IAE  +  K+DFL+ +SHEIRTP
Sbjct: 237 AVGTPIVADNKVVVLRGAITDITQKKEIELELLRAKDIAEHSAKAKTDFLSVMSHEIRTP 296

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  IIG + ++K +           EY   +  S + +L ++ND+LD++KIES K+ L  
Sbjct: 297 LNGIIGIANLLKLKHTM-----DQEEYVRSLIFSADHLLQLINDILDLTKIESDKLELVL 351

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
             V++ E V    +  +  A  K I++++   ++IP+ ++AD   + QI  N++SNAI F
Sbjct: 352 AEVNIFELVRNIKNQFKSLAEAKGIVVKSFIDDDIPQRLIADPVRLGQILNNLISNAIKF 411

Query: 719 TPSGG-QIIIS-TTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T SG   I +S    T+N   V   V+DTG+G+     E   + F Q+      +  GTG
Sbjct: 412 TESGAVTITLSLVALTANKANVHFSVKDTGMGIPEELHETIFESFKQVQQDVHRKHTGTG 471

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           LGL + + +V+ + G+  + ST  +GT      
Sbjct: 472 LGLAITQKLVELHDGRILLKSTAGQGTEFYFEL 504


>gi|107103629|ref|ZP_01367547.1| hypothetical protein PaerPA_01004699 [Pseudomonas aeruginosa PACS2]
          Length = 1417

 Score =  316 bits (811), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 112/662 (16%), Positives = 223/662 (33%), Gaps = 48/662 (7%)

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS--LTE 245
           R+     A  +                  ++    D           R +  V    +  
Sbjct: 334 RLRRRREAATQARLAAIVGNSADGIIGVGLDGVISDWNRGAEALFGYREEQAVGRRVVDL 393

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
                 +  + +    +  +E  +         + +          +             
Sbjct: 394 LVPPSKENEELDILARIARKEQVVSFDTVRRHQDGHLLDVAVTVSPILGPDGGVVGASKT 453

Query: 306 RNHPSLSAYFDEGENLTPETVDK-------------------CPIP-----FFVYSHGNL 341
               S     +         ++                               +   G +
Sbjct: 454 VRDISAKKAAEARIRELNTGLEHQIAERTAELRRLNVLLGSVLQAASEVSIITLDRDGII 513

Query: 342 FYANPSFLLLTKYKSVDDIEIAGGL----STLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397
              N     +  Y++ + +  A          L A           V++ R+++    A 
Sbjct: 514 SGFNLGAERMLGYRADEVVGKASPTLLHSERELLARGQELGEEGFRVLVARAEQEG--AE 571

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
            R  T      + L++T       ++        GI  +  + R  +R+M     QL   
Sbjct: 572 TREWTYLRKDGSPLSVTLSVTVLRDEAGAINGYLGIAVDVTEWRNAEREMAAARDQLQMA 631

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFG----YPVEDILRKPFTVFLEQNTPSVMNHYL 513
            +    GI   N     L  N  + +L+G         ++ + +   L           L
Sbjct: 632 ADVARLGIWRWNLADDSLQWNERMCELYGQPLALRDGGLVYEHWRSRLHPEDLERTEASL 691

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKNKL 571
              +       +    +      + +     +++    +    +    DI+  +Q + +L
Sbjct: 692 RAAVEGRGNYDVIFRVVLPDGGIRFIQAGAQVERDADGNPLQVTGINIDITSDQQLQARL 751

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
             AK+ A+  S+ KS FLA +SHEIRTP+ A++G  ++ +        N R  +Y +   
Sbjct: 752 REAKEQADAASAAKSSFLANMSHEIRTPMNAVLGMLQLARQTDL----NERQRDYLDKAS 807

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
            +   +L ++ND+LD SKIE+GK+ L   P  L+  + +   ++     +K + +     
Sbjct: 808 SAATSLLGLLNDILDYSKIEAGKLVLEMLPFELEPLMQDLAVVLSGNQGDKDVEVIFDID 867

Query: 692 NNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH--TSNEEVILRV--RDTGV 746
             +P  ++ D   ++QI +N+  NA+ FT  G  +++S          V LRV   DTG+
Sbjct: 868 PELPSAVVGDRLRLQQILINLAGNALKFTARG-HVLVSLRRLAHDAHLVRLRVLVADTGI 926

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G++  + ++  + F Q   S   R  GTGLGL + K +VD   G+  + S P  G+    
Sbjct: 927 GISAEQQQRIFEGFTQAEASTSRRFGGTGLGLFICKRLVDLMGGELRVESAPGSGSRFWF 986

Query: 807 IF 808
             
Sbjct: 987 DL 988



 Score =  110 bits (275), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 69/523 (13%), Positives = 141/523 (26%), Gaps = 61/523 (11%)

Query: 97  EISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTN 156
            ++E+  +       +++   +    ++         G LL        +          
Sbjct: 34  LVNEQQARMALEREAELLAEAVTRRVELYQYGLRGVRGALLTAGEAHIDRELFRR----- 88

Query: 157 LYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSS 216
                          +REF G RGFG +   RV     A   R  +         +  + 
Sbjct: 89  --------YSLTRDIDREFPGARGFGFIR--RVAAADEAGFLRQARADGQPEFRIQQLTP 138

Query: 217 VEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFH 276
            + E+Y I   +    + +      +                   LT   + +       
Sbjct: 139 HDGERYVIQYIEPVARNGQALGLDIASEANRREAARAALETGQVRLTGPITLVQASGLRQ 198

Query: 277 TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY 336
              L                +                 +     LT E +   PI     
Sbjct: 199 QSFLILMPIY----------RSGITPPPGPQRELEGFGWSYAPLLTGEVLAGLPI----- 243

Query: 337 SHGNLFYANPS-FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIA 395
                   N +  L L+                   A +L  +   + +          A
Sbjct: 244 -------DNAAIHLELSDVTGDGAAVPFFVNGAAAPAQRLFGHMLRREIYGRHWQMAFSA 296

Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
               +  +       L +             N    G        R+ +R+      +L 
Sbjct: 297 LPLFVQRLHQPSPRILFLAGSLVSLLLAALVNASALG--------RLRRRREAATQARLA 348

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS-VMNHYLT 514
           +I+  ++DGI  +  +G+I   NR    LFGY  E  + +     L   +        L 
Sbjct: 349 AIVGNSADGIIGVGLDGVISDWNRGAEALFGYREEQAVGRRVVDLLVPPSKENEELDILA 408

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNK 570
            I      Q +   T+   ++  LL + + +  +       +    T+ DIS  K  + +
Sbjct: 409 RIA--RKEQVVSFDTVRRHQDGHLLDVAVTVSPILGPDGGVVGASKTVRDISAKKAAEAR 466

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
           +       E + + ++        E+R  L  ++G      ++
Sbjct: 467 IRELNTGLEHQIAERTA-------ELRR-LNVLLGSVLQAASE 501



 Score = 93.9 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/404 (8%), Positives = 93/404 (23%), Gaps = 46/404 (11%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL--HIDPNNHIGDLLKRQNTWYGK 146
           +   G + + +       G    + +G R+ D+        +  + +  + +++      
Sbjct: 361 VGLDGVISDWNRGAEALFGYREEQAVGRRVVDLLVPPSKENEELDILARIARKEQVVSFD 420

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR------- 199
           T     +G  L V + ++  PI   +    G      V          A  +        
Sbjct: 421 TVRRHQDGHLLDVAVTVS--PILGPDGGVVGASK--TVRDISAKKAAEARIRELNTGLEH 476

Query: 200 ---------------LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244
                          L        E+       +                R    V   +
Sbjct: 477 QIAERTAELRRLNVLLGSVLQAASEVSIITLDRDGIISGFNLGAERMLGYRADEVVGKAS 536

Query: 245 EYYAHKDDVLKTEKYPL----------LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294
               H +  L      L             +E +   +  +   + +  +       L++
Sbjct: 537 PTLLHSERELLARGQELGEEGFRVLVARAEQEGAETREWTYLRKDGSPLSVTLSVTVLRD 596

Query: 295 NSKESFEYLSHRNHPSLSAYFDEG----ENLTPETVDKCPIPFFVYS-HGNLFYANPSFL 349
            +     YL      +     +       +      D   +  + ++   +    N    
Sbjct: 597 EAGAINGYLGIAVDVTEWRNAEREMAAARDQLQMAADVARLGIWRWNLADDSLQWNERMC 656

Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
            L        +   G +     +    ++       L  +             +  +   
Sbjct: 657 ELYGQPL--ALRDGGLVYEHWRSRLHPEDLERTEASLRAAVEGRGNYDVIFRVVLPDGG- 713

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
              +      + +     +   GI  +    +  + ++     Q
Sbjct: 714 IRFIQAGAQVERDADGNPLQVTGINIDITSDQQLQARLREAKEQ 757


>gi|329957581|ref|ZP_08298056.1| PAS domain S-box protein [Bacteroides clarus YIT 12056]
 gi|328522458|gb|EGF49567.1| PAS domain S-box protein [Bacteroides clarus YIT 12056]
          Length = 808

 Score =  316 bits (811), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 96/516 (18%), Positives = 202/516 (39%), Gaps = 26/516 (5%)

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGG 365
                    D  E L        P    +Y   G L   N   + +   +   D+     
Sbjct: 308 EAIHERQALDRSEKLFRNIFTNIPAGVEIYDTNGILVDINNKNMEIFGIRDKADVIGINL 367

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
                 +P+L +    + V+ +R D    +          +R N + +     +  +   
Sbjct: 368 FENPNLSPQLIERIREQDVVDFRLDYEFGSIEGY---YPSDRRNKINLYTKVSKIYDSKG 424

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA---IINREGI-ILSTNRAV 481
                  I  ++ +      ++         I +    G A   +++++G  I    + +
Sbjct: 425 YFTGYALINIDNTERIDALSRICDFENFFLLISDYAKVGYAKLNLLDKKGYAIKQWYKNM 484

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS--TKEEK-L 538
            +     + +++       +       M  +  +     ++    ++ +    TK++   
Sbjct: 485 GEDENASLPEVVG--VYGKMHPEDRKQMLDFFYKARLGKVKDFKGEMRILRPGTKDQWNW 542

Query: 539 LSLRIIIKKLPFSSCYS---LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
           +   +++ +    +         +DI+E K+ ++KL  AK+ AE     KS FLA +SHE
Sbjct: 543 IRTNVVVNQFKPENGVIELIGINYDITELKETESKLIDAKEKAETADRLKSAFLANMSHE 602

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           IRTPL AI+GFS ++  +           +Y   ++ +  L+L +++D+LD+SK+E+G  
Sbjct: 603 IRTPLNAIVGFSSLLVQEE----NPEEREQYMAIVEENNELLLQLISDILDLSKMEAGTF 658

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715
           +     + ++    + + +++L A    + +          I +D   + Q+  N ++NA
Sbjct: 659 DFVERELDVNLLCEDMVRVMKLKAKP-GVEVVFDRHLPECVIASDRNRLNQVIANFINNA 717

Query: 716 IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           I FT  G  I +         +   V DTG+G+   +  +    F ++ +       GTG
Sbjct: 718 IKFTAIGS-IRLGYDRIDAGHLRFYVADTGIGIMQEKQAEIFDRFVKLNSFVH----GTG 772

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
           LGL ++K++V+   G   + S P KG       P+ 
Sbjct: 773 LGLSISKSIVEQLGGTIGVESEPGKGACFWFTLPIA 808


>gi|330796122|ref|XP_003286118.1| hypothetical protein DICPUDRAFT_150045 [Dictyostelium purpureum]
 gi|325083937|gb|EGC37377.1| hypothetical protein DICPUDRAFT_150045 [Dictyostelium purpureum]
          Length = 1758

 Score =  316 bits (811), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 98/378 (25%), Positives = 176/378 (46%), Gaps = 26/378 (6%)

Query: 445  RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            +++E + +++ S+   +++ + +  ++G+I   N A   +F   ++D+L  P    + + 
Sbjct: 698  KEIERKELRIQSLFRISNEALVVH-KDGLITDANPAFESMFQIKLQDLLY-PIQSGIWE- 754

Query: 505  TPSVMNHYLTEILSLDLRQTLE------KITLGSTKEEKLLSLRIIIKK--LPFSSCYSL 556
                    L  +      +T +        T G     +   + +   K          +
Sbjct: 755  ----FLPALEGMFEPGASKTFDNSDIGVIETTGIDSSGRTFQVEVRTNKATYGGEPVDVI 810

Query: 557  TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            ++ DI+  KQ   +  +A + AE  +  K  FL  VSHE+RTP+  ++  +++++     
Sbjct: 811  SIIDITGRKQL-MEADYALRKAEAANEAKVIFLTTVSHELRTPINGVLASADILERTTL- 868

Query: 617  PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
               +    E+ N I  SGN +LD++ND+LD SKIE+GKM +     S+ + +   I +V 
Sbjct: 869  ---DSTQKEFLNCIKLSGNYLLDLINDILDYSKIEAGKMEIIKYDFSILKMLDNGIRIVS 925

Query: 677  LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
                EK + +      N+P I+  D R +KQI LN LSN+I FT  G QIII     S  
Sbjct: 926  KNIYEKGLELCVFVDPNVPVIINGDGRRIKQILLNFLSNSIKFTNEG-QIIIRVKLESEN 984

Query: 736  E----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
            E    + + V D+G+G+    L +    F QI +    + +GTGLGL ++K +     G 
Sbjct: 985  EKESLIKIDVEDSGIGIKPEHLGQLFASFSQIDSGNSRKYQGTGLGLSISKRLCKMMGGD 1044

Query: 792  FYIFSTPAKGTLIEIIFP 809
             ++ S    G+      P
Sbjct: 1045 VHVKSEFGIGSTFSFTIP 1062


>gi|228961728|ref|ZP_04123332.1| hypothetical protein bthur0005_51660 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228797963|gb|EEM44972.1| hypothetical protein bthur0005_51660 [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 613

 Score =  316 bits (811), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 83/372 (22%), Positives = 158/372 (42%), Gaps = 25/372 (6%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +  +   E E  +L S+L   +DG+   +R+G I+  N    K+     E  L +     
Sbjct: 258 QQARSSTESERRKLSSVLSHMTDGVIATDRKGDIILLNDPAEKMLNVSRETALDQSVLEV 317

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
           L       ++H   E  S+ L  +                  +I K+   ++     ++D
Sbjct: 318 LGIQEEFTLDHLYEEPDSVLLDFSTRNEPYILRAS-----FSVIQKETGKANGLIAVLYD 372

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           ++                E+    + +F+A VSHE+RTPLT +  + E + +  +     
Sbjct: 373 VT--------------EQERIERERREFVANVSHELRTPLTTMRSYLEALTDGAWQDPNI 418

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
                +          ++ +VN LL +SK++S +  L  E V   +  +  I   +  + 
Sbjct: 419 APQ--FLTVTQEETERMIRLVNALLQLSKLDSTEHRLMKEWVDFTDFFNNIIDRFE-MSK 475

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV-IL 739
           E+ +  + SF+     I  D   + Q+  NI+SNA+ ++P GG +          ++  +
Sbjct: 476 EQNVSFKRSFSKKSRFIDMDTDKITQVLYNIISNALKYSPEGGTVT--YRLRDRGDLLEI 533

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V D G+G+    ++K  + F ++  ++  +  GTGLGL +AK M++A+ G  +  S   
Sbjct: 534 SVSDQGMGIPKENVDKIFERFYRVDKARSRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEG 593

Query: 800 KGTLIEIIFPLY 811
           KGT I    P+ 
Sbjct: 594 KGTTIYFTLPMA 605


>gi|270294471|ref|ZP_06200673.1| two-component system sensor histidine kinase [Bacteroides sp. D20]
 gi|270275938|gb|EFA21798.1| two-component system sensor histidine kinase [Bacteroides sp. D20]
          Length = 927

 Score =  316 bits (811), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 96/519 (18%), Positives = 201/519 (38%), Gaps = 24/519 (4%)

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIE 361
           L   +        D  E L        P    +Y   G L   N   + +   +   D+ 
Sbjct: 421 LDTTDSVQTHLALDHSEKLFKNIFANIPAGVEIYDKDGFLVDINNKDMEIFGVRDKQDVI 480

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                     + +L++    + ++ +R +           T     ++ + +     +  
Sbjct: 481 GVNLFENPNVSAQLAERIQTEDMVDFRLNYAFDRTEGYYST-SKQPKDVIHLYTKVSKVY 539

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA---IINREGI-ILST 477
           +          I  ++ +      ++         I +    G A   +++R+G  I   
Sbjct: 540 DSKGNFTGYAMINIDNTERIDAMSRICDFENFFLLISDYAKVGYAKLNLLDRKGYAIKQW 599

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE-E 536
            + + +     + D++       +  +    M  + ++    + +    ++ +    E  
Sbjct: 600 YKNMGEDENTQLADVVG--IYSKMYPSDRRRMLDFFSKARVGEAKHFQGEMRIERPGEKG 657

Query: 537 KLLSLRIIIK-----KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
           K   +R  +                  +DI+E K+ +  L  AK+ AE     KS FLA 
Sbjct: 658 KWNWVRTNVVVNLFEPENGQIELIGVNYDITELKETEAMLIEAKEKAETADRLKSAFLAN 717

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           +SHEIRTPL AI+GFS ++              +Y   I+ + +L+L +++D+LD+SKIE
Sbjct: 718 MSHEIRTPLNAIVGFSSLMGETG----DMEEKRQYMAIIEENNDLLLQLISDILDLSKIE 773

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
           +G  +   + + ++    + +  +++ A    + +         RI++D   + Q+  N 
Sbjct: 774 AGTFDFVEKELDVNMLCEDIVRFMKMKAKP-GVEVLFDRHLPECRIVSDRNRLNQVIANF 832

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           ++NAI FT +G  I +         +   V DTG+G+      +    F ++        
Sbjct: 833 VNNAIKFTTAGS-IRVGYNKVDETHLRFYVADTGLGIEPEMQAQIFDRFIKLNTFVH--- 888

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            GTGLGL ++K++++   G   + S P KG+    + P+
Sbjct: 889 -GTGLGLSISKSIIEQLGGTIGVDSEPGKGSCFWFVLPI 926



 Score = 45.4 bits (106), Expect = 0.042,   Method: Composition-based stats.
 Identities = 19/159 (11%), Positives = 55/159 (34%), Gaps = 8/159 (5%)

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
           PE      +  +  D+      ++       +I      G+ I +++G ++  N    ++
Sbjct: 411 PEKNEVVALFLDTTDSVQTHLALDHSEKLFKNIFANIPAGVEIYDKDGFLVDINNKDMEI 470

Query: 485 FGY-PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI---TLGSTKEEKLLS 540
           FG    +D++          +          +++   L    ++       S + + ++ 
Sbjct: 471 FGVRDKQDVIGVNLFENPNVSAQLAERIQTEDMVDFRLNYAFDRTEGYYSTSKQPKDVIH 530

Query: 541 LRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAK 575
           L   + K+  S      Y++   D +E     +++   +
Sbjct: 531 LYTKVSKVYDSKGNFTGYAMINIDNTERIDAMSRICDFE 569



 Score = 39.6 bits (91), Expect = 2.5,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 48/148 (32%), Gaps = 17/148 (11%)

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGI----AIINREGI-----ILSTNRAVSKLFGYPV 489
           + R  K +   E   L ++      G      + + +       +   N   +   G P 
Sbjct: 300 ELRKTKDEAVRERTFLSNLFRYMPLGYVRMSIVCDEKDNPYGYYVTDANSIFADFLGKPA 359

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
              + K  + F  +  P     YL EI++    + ++     + K   ++         P
Sbjct: 360 STFIGKTASSFSREAAPR--LEYLLEIVNTGTHKEMDMCFELTNKHCHVVIYS------P 411

Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKI 577
             +       D ++  Q    L H++K+
Sbjct: 412 EKNEVVALFLDTTDSVQTHLALDHSEKL 439


>gi|160891180|ref|ZP_02072183.1| hypothetical protein BACUNI_03627 [Bacteroides uniformis ATCC 8492]
 gi|317481076|ref|ZP_07940155.1| hsp90-like protein [Bacteroides sp. 4_1_36]
 gi|156859401|gb|EDO52832.1| hypothetical protein BACUNI_03627 [Bacteroides uniformis ATCC 8492]
 gi|316902789|gb|EFV24664.1| hsp90-like protein [Bacteroides sp. 4_1_36]
          Length = 940

 Score =  316 bits (811), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 96/519 (18%), Positives = 201/519 (38%), Gaps = 24/519 (4%)

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIE 361
           L   +        D  E L        P    +Y   G L   N   + +   +   D+ 
Sbjct: 434 LDTTDSVQTHLALDHSEKLFKNIFANIPAGVEIYDKDGFLVDINNKDMEIFGVRDKQDVI 493

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                     + +L++    + ++ +R +           T     ++ + +     +  
Sbjct: 494 GVNLFENPNVSAQLAERIQTEDMVDFRLNYAFDRTEGYYST-SKQPKDVIHLYTKVSKVY 552

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA---IINREGI-ILST 477
           +          I  ++ +      ++         I +    G A   +++R+G  I   
Sbjct: 553 DSKGNFTGYAMINIDNTERIDAMSRICDFENFFLLISDYAKVGYAKLNLLDRKGYAIKQW 612

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE-E 536
            + + +     + D++       +  +    M  + ++    + +    ++ +    E  
Sbjct: 613 YKNMGEDENTQLADVVG--IYSKMYPSDRRRMLDFFSKARVGEAKHFQGEMRIERPGEKG 670

Query: 537 KLLSLRIIIK-----KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
           K   +R  +                  +DI+E K+ +  L  AK+ AE     KS FLA 
Sbjct: 671 KWNWVRTNVVVNLFEPENGQIELIGVNYDITELKETEAMLIEAKEKAETADRLKSAFLAN 730

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           +SHEIRTPL AI+GFS ++              +Y   I+ + +L+L +++D+LD+SKIE
Sbjct: 731 MSHEIRTPLNAIVGFSSLMGETG----DMEEKRQYMAIIEENNDLLLQLISDILDLSKIE 786

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
           +G  +   + + ++    + +  +++ A    + +         RI++D   + Q+  N 
Sbjct: 787 AGTFDFVEKELDVNMLCEDIVRFMKMKAKP-GVEVLFDRHLPECRIVSDRNRLNQVIANF 845

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           ++NAI FT +G  I +         +   V DTG+G+      +    F ++        
Sbjct: 846 VNNAIKFTTAGS-IRVGYNKVDETHLRFYVADTGLGIEPEMQAQIFDRFIKLNTFVH--- 901

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            GTGLGL ++K++++   G   + S P KG+    + P+
Sbjct: 902 -GTGLGLSISKSIIEQLGGTIGVDSEPGKGSCFWFVLPI 939



 Score = 45.4 bits (106), Expect = 0.042,   Method: Composition-based stats.
 Identities = 19/159 (11%), Positives = 55/159 (34%), Gaps = 8/159 (5%)

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
           PE      +  +  D+      ++       +I      G+ I +++G ++  N    ++
Sbjct: 424 PEKNEVVALFLDTTDSVQTHLALDHSEKLFKNIFANIPAGVEIYDKDGFLVDINNKDMEI 483

Query: 485 FGY-PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI---TLGSTKEEKLLS 540
           FG    +D++          +          +++   L    ++       S + + ++ 
Sbjct: 484 FGVRDKQDVIGVNLFENPNVSAQLAERIQTEDMVDFRLNYAFDRTEGYYSTSKQPKDVIH 543

Query: 541 LRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAK 575
           L   + K+  S      Y++   D +E     +++   +
Sbjct: 544 LYTKVSKVYDSKGNFTGYAMINIDNTERIDAMSRICDFE 582



 Score = 38.9 bits (89), Expect = 3.6,   Method: Composition-based stats.
 Identities = 21/148 (14%), Positives = 48/148 (32%), Gaps = 17/148 (11%)

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGI----AIINREGI-----ILSTNRAVSKLFGYPV 489
           + R  K +   E   L ++      G      + + +       +   N   +   G P 
Sbjct: 313 ELRKTKDEAVRERTFLSNLFRYMPLGYVRMSIVCDEKDNPYGYYVTDANSIFADFLGKPA 372

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
              + K  + F  +  P     YL +I++    + ++     + K   ++         P
Sbjct: 373 STFIGKTASSFSREAAPR--LEYLLDIVNTGTHKEMDMCFELTNKHCHVVIYS------P 424

Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKI 577
             +       D ++  Q    L H++K+
Sbjct: 425 EKNEVVALFLDTTDSVQTHLALDHSEKL 452


>gi|29654391|ref|NP_820083.1| hypothetical protein CBU_1084 [Coxiella burnetii RSA 493]
 gi|29541658|gb|AAO90597.1| two component system histidine kinase [Coxiella burnetii RSA 493]
          Length = 683

 Score =  316 bits (811), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 102/516 (19%), Positives = 211/516 (40%), Gaps = 29/516 (5%)

Query: 321 LTPETVDKCPIPFFVYSHG--NLFYANPSFLLLTKYKSVDDIEIAG-GLSTLLDAPKLSD 377
           L     +     F++ S       Y +P+F  +               ++ ++   +   
Sbjct: 33  LFLNLAETSQDIFWIRSVDFYTHVYVSPAFENIFGISRQTLYANPNKWMNAVIIEDRDRL 92

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
            + I    +            R+     +    +           +  + +   G+  + 
Sbjct: 93  RHLIMEWQVKNKKGAAYTVDYRI----IDAYGEMHWINETSYPVYEDDQCLGYAGVVKDV 148

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREG-IILSTNRAVSKLFGYPVEDILR-- 494
              ++  ++ +  V      +E  S    +    G   +  +    K++G   E + +  
Sbjct: 149 SSEKLRVKEFDNAVHYFRHFVERVSGVFWVKGSRGDKQIYISPTYEKIWGVSCESLYQNP 208

Query: 495 KPFTVFLEQNTP---SVMNHYLTEILSLDLR-QTLEKITLGSTKEEKLLSLRIIIKKLPF 550
           K +  ++         V  ++              E        + ++  ++     +  
Sbjct: 209 KSWIDYVLPEDISNGKVNVNFYETAADQRTPDSKYEFHFRIRRPDGEIRWIKDTYFPIME 268

Query: 551 SS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
           +     ++    D++     + +L  AK+ AE+ +  KSDFLA +SHE+RTPL AI+G S
Sbjct: 269 NGKLVGFAGIAEDVTNDALREKELWEAKEFAEQANRTKSDFLAMMSHELRTPLNAILGMS 328

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
           +++K        +       + I ++G  +L ++NDLLD +K+E+GK++   E + L E 
Sbjct: 329 QILKTHNL----SDEQQGQIDVISQAGQNLLALLNDLLDFAKLEAGKLSFTEETMDLHEL 384

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII 726
           V +    + L A++K I ++  +  NIP +++ D + ++Q+ +N+LSNA+ FT  G  + 
Sbjct: 385 VMKIKGDMLLLAHKKGIQLKFDYPENIPSKVMGDAKRIRQVLVNLLSNALKFTEKG-YVQ 443

Query: 727 ISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
           ++      +     +   V+DTG+GM   +L      F QI +  Q + +G GLGL + K
Sbjct: 444 LTANCLKKDHKKMTLCFTVKDTGIGMEKTKLSSIFNRFQQINSVYQRKYDGVGLGLSIVK 503

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFP--LYDTSHP 816
            +++   G   + S P  G+    I P  L   S+P
Sbjct: 504 ELLEKMGGTISVTSEPGVGSEFTCIIPFRLQADSNP 539


>gi|296162827|ref|ZP_06845609.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. Ch1-1]
 gi|295886923|gb|EFG66759.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. Ch1-1]
          Length = 657

 Score =  316 bits (811), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 90/493 (18%), Positives = 179/493 (36%), Gaps = 27/493 (5%)

Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
           F + + G +   N     L  Y   + I      S       ++ +     +        
Sbjct: 45  FLLDATGRIVSCNAGAQKLAGYTDREIIGQ--HFSRFYTEEAVARDWPAYELQQASLTGR 102

Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
                     ++ +     +   +     N          I  +    R     +     
Sbjct: 103 ---FEDEGWRVRKDGTTFWS-NVVITSIRNDAGILTGFAKITRDLTARREYVEALRQSEE 158

Query: 453 QLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
           +   ++++  D  I +++ +G ++S N   +++ GY  E+I+ + F+ F      +    
Sbjct: 159 RFRLLVDSVKDYAIFMLDPQGHVVSWNAGAARIKGYTREEIVGRHFSTFYPPEDAAAGKP 218

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQE 567
              E+        +E       K+       + I  +   S     ++    D++E +Q 
Sbjct: 219 A-RELAIARQIGHVEDEGWRVRKDGTTFWANVNITAVYDESKRLCGFAKVTRDLTERRQR 277

Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
           +      +++          FLA ++HE+R PL  +     V++ +        R  +  
Sbjct: 278 EELERSGERM--------RQFLATLAHELRNPLAPVRNAIGVMQLETGISSTLARSRDL- 328

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
             IDR    +  +V+DLLD+ +I S K+ L    V L E V+  I   + + +     + 
Sbjct: 329 --IDRQVTHLTRLVDDLLDVGRIMSNKVELRVGRVDLAEVVARGIEAARPFTDAHEQRVV 386

Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747
                    +  D+  + Q+  N+L NA  F+P G  + +          +L VRD G G
Sbjct: 387 AHMPLEPIFVRGDMTRLVQVLQNLLHNASKFSPVGSVVDV-VARIDFHMAVLEVRDAGCG 445

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEI 806
           +    L+K  + F Q   +Q     G G+GL L K++V+ + G     S  P  G+   +
Sbjct: 446 IALRSLDKIFELFAQEKEAQSAGEGGLGIGLTLCKSLVEMHGGSIVASSEGPGSGSTFTL 505

Query: 807 IFPLYDTSHPHDC 819
             PL   + P + 
Sbjct: 506 SLPL--AAAPSEA 516



 Score = 65.4 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/302 (7%), Positives = 73/302 (24%), Gaps = 8/302 (2%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + +D  G++   +    +  G    +++G                   +L   +   + 
Sbjct: 172 IFMLDPQGHVVSWNAGAARIKGYTREEIVGRHFSTFYPPEDAAAGKPARELAIARQIGHV 231

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRAL----GKRLD 201
           +   W +         ++    +Y  ++   GF    +            L     +   
Sbjct: 232 EDEGWRVRKDGTTFWANVNITAVYDESKRLCGFAK--VTRDLTERRQREELERSGERMRQ 289

Query: 202 KKFSHLHEIKKGHSSVEKEKYDI-FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
              +  HE++   + V      +           R ++ +     +     D L      
Sbjct: 290 FLATLAHELRNPLAPVRNAIGVMQLETGISSTLARSRDLIDRQVTHLTRLVDDLLDVGRI 349

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
           +    E  +   +    +       + +    +                 ++      +N
Sbjct: 350 MSNKVELRVGRVDLAEVVARGIEAARPFTDAHEQRVVAHMPLEPIFVRGDMTRLVQVLQN 409

Query: 321 LTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
           L        P+   V     + +   + L +        +     +  L    K + +  
Sbjct: 410 LLHNASKFSPVGSVVDVVARIDFH-MAVLEVRDAGCGIALRSLDKIFELFAQEKEAQSAG 468

Query: 381 IK 382
             
Sbjct: 469 EG 470



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 41/410 (10%), Positives = 107/410 (26%), Gaps = 22/410 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + +DA G +   +    K  G    ++IG           +  +    +L +   T   
Sbjct: 44  IFLLDATGRIVSCNAGAQKLAGYTDREIIGQHFSRFYTEEAVARDWPAYELQQASLTGRF 103

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +   W +         ++    I +     +GF    I        +     ++ +++F 
Sbjct: 104 EDEGWRVRKDGTTFWSNVVITSIRNDAGILTGFAK--ITRDLTARREYVEALRQSEERFR 161

Query: 206 HLHEIKKGHSS--VEKEKYDIFSQQSPPPHLRMKNKVSS---LTEYYAHKDDVLKTEKYP 260
            L +  K ++   ++ + + +              +       + +Y  +D         
Sbjct: 162 LLVDSVKDYAIFMLDPQGHVVSWNAGAARIKGYTREEIVGRHFSTFYPPEDAAAGKPARE 221

Query: 261 LLTSEESSLPEQEDFH-TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF---- 315
           L  + +    E E +    +   +        + + SK    +       +         
Sbjct: 222 LAIARQIGHVEDEGWRVRKDGTTFWANVNITAVYDESKRLCGFAKVTRDLTERRQREELE 281

Query: 316 ---DEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
              +           +   P     +        + +  T  +S D I+      T L  
Sbjct: 282 RSGERMRQFLATLAHELRNPLAPVRNAIGVMQLETGISSTLARSRDLIDRQVTHLTRLVD 341

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
             L     +   +  R           L  +      +        E+       +    
Sbjct: 342 DLLDVGRIMSNKVELRV------GRVDLAEVVARGIEAARPFTDAHEQRVVAHMPLEPIF 395

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
           +  +        + +     +  S + +  D +A I+    +L    A  
Sbjct: 396 VRGDMTRLVQVLQNLLHNASKF-SPVGSVVDVVARIDFHMAVLEVRDAGC 444


>gi|313673507|ref|YP_004051618.1| multi-sensor hybrid histidine kinase [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312940263|gb|ADR19455.1| multi-sensor hybrid histidine kinase [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 1101

 Score =  316 bits (811), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 105/499 (21%), Positives = 192/499 (38%), Gaps = 29/499 (5%)

Query: 317 EGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEI-AGGLSTLLDAPK 374
           E E      +       ++    GN    N S   +  Y   D +   A  +  L    K
Sbjct: 349 EREQFIENILSTIHTGLYIINQDGNTIRINESLTRILGYTEEDLLGKSAHDIFHLHHQDK 408

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
            +             + T I          +  +N   +      K  +F          
Sbjct: 409 NNCPIFKVITTNREYEGTEI----------FKSKNGDFLHVTVKSKRFEFQGEHYALVTF 458

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL- 493
            +  +    + ++      L +I+E  +D + + + +  I+  N  + K F  P++ +  
Sbjct: 459 IDISELVERENELNKTNFILNTIIENFNDAVMLTD-DKTIVQINDKMIKDFCVPLDLLPE 517

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553
                           + ++    S      L+      T +EK + +R +  K    S 
Sbjct: 518 GIDKVFAFISLNFKNQSEFMNFAYSDKENTILD------TVDEKHIEIRKVPIKSFKFSG 571

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
                 D +E      K++  K+ AE+ +  KS FL+ +SHEIRTP+  IIG  E+I   
Sbjct: 572 ILWIFSDRTETISNMKKMAMLKEKAEEANKAKSLFLSSMSHEIRTPINGIIGAIELIPKH 631

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
                 +     Y N I  S   +L ++ND+LD+SKIESG + L   P    + +    S
Sbjct: 632 NL----SDEISSYLNIIKSSSEHLLMLINDILDLSKIESGYLKLENIPFEPIKVLKRVRS 687

Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-- 731
           ++      K +     + +    +  D   + Q+ +N+  NA+ FT  G ++ +      
Sbjct: 688 IIYPTTIPKGLTFSIDYPDRGICVYGDPHRLSQVLINLSGNAVKFTEKG-EVEVKMEILS 746

Query: 732 --TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
              +   +   VRDTG+G+   +++K  KPF QI +S   +  GTGLGL +++ +V    
Sbjct: 747 ESETEIRLKFSVRDTGIGIPEDKMDKLFKPFSQIDDSHTRKFGGTGLGLVISQNLVKMFG 806

Query: 790 GKFYIFSTPAKGTLIEIIF 808
           G   + S   +G++     
Sbjct: 807 GIIKVESKVGEGSIFSFEI 825



 Score = 43.9 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 1/74 (1%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN-HIGDLLKRQNTWYGKT 147
           I+  G    I+E L + +G     ++G    D+  + H D NN  I  ++     + G  
Sbjct: 368 INQDGNTIRINESLTRILGYTEEDLLGKSAHDIFHLHHQDKNNCPIFKVITTNREYEGTE 427

Query: 148 TLWPIEGTNLYVPI 161
                 G  L+V +
Sbjct: 428 IFKSKNGDFLHVTV 441


>gi|237716423|ref|ZP_04546904.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262408024|ref|ZP_06084572.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_22]
 gi|294643626|ref|ZP_06721428.1| PAS domain S-box [Bacteroides ovatus SD CC 2a]
 gi|294808045|ref|ZP_06766818.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b]
 gi|229444070|gb|EEO49861.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262354832|gb|EEZ03924.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_22]
 gi|292641003|gb|EFF59219.1| PAS domain S-box [Bacteroides ovatus SD CC 2a]
 gi|294444686|gb|EFG13380.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b]
          Length = 810

 Score =  316 bits (811), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 104/513 (20%), Positives = 193/513 (37%), Gaps = 36/513 (7%)

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
               D  E +        P    +Y   G L   N   L +      ++         L 
Sbjct: 314 RLALDNSEKILRNIYKNLPAGVELYDKDGYLVDINDKELEIFGLSDKNEALGVN----LF 369

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARL----HTIQWNRENSLAMTFIPFEKANQFPE 426
           D P +      +   L   +    + +         +   R   + +        +    
Sbjct: 370 DNPNIPSEVKER---LRAKEDVNFSINYDFSKINQYVDSRRNGIINLNTKVTALYDSQNR 426

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA---IINREGIILSTNRAVSK 483
            +    I  +  +T     K++        I +    G A   ++ R+G          +
Sbjct: 427 FINYLFINIDTTETTNAYTKIQEFENLFLLIGDYAKVGFAHFNVLTRDG---YAQDTWYR 483

Query: 484 LFGYPVEDILRKPFTVFLE--QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS- 540
             G      + +   V+        +V+ +++ E+       +L K      +  K    
Sbjct: 484 NLGEKEGIPMPQVIGVYAHVVPEDQAVLKNFVGEV-KTGKATSLRKEVRVCRENGKYTWT 542

Query: 541 -LRIIIKKLPFSSCYS---LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
            + ++++               +DI+  K+ + KL  A+  AE+    KS FLA +SHEI
Sbjct: 543 SINVMVRDYRPQDGIIEMLCINYDITPLKETEQKLIIARDKAEELDRLKSAFLANMSHEI 602

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTPL AI+GFS ++              EY   +  +  L+L +++D+LD+SKIE+G  N
Sbjct: 603 RTPLNAIVGFSSLLAETD----SRSERQEYIKIVQENNELLLQLISDILDLSKIEAGTFN 658

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716
             +  V ++E  SE I  + +    K + +          I  D     Q+  N ++NA+
Sbjct: 659 FVYTNVDVNETCSEIIKSMGMKV-GKGVELILEEPFPECYIYTDKNRFTQVISNFINNAL 717

Query: 717 HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
            FT  G  I +     S++++   VRDTG+G+   + +   + F ++        +GTGL
Sbjct: 718 KFTQQGS-ITLGYEQVSHQKIKFYVRDTGMGIPEEKQKSVFERFVKLNTF----VQGTGL 772

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GL + K++V    G+  + ST   G+      P
Sbjct: 773 GLSICKSIVSQMGGEIGVDSTEGIGSCFWFTHP 805


>gi|323137204|ref|ZP_08072283.1| multi-sensor signal transduction histidine kinase [Methylocystis
           sp. ATCC 49242]
 gi|322397562|gb|EFY00085.1| multi-sensor signal transduction histidine kinase [Methylocystis
           sp. ATCC 49242]
          Length = 623

 Score =  316 bits (811), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 124/579 (21%), Positives = 231/579 (39%), Gaps = 35/579 (6%)

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
           +   S  E     ++        ++   +      +   L                    
Sbjct: 8   NWRPSWVEHLVHESVAGRPLEAARHRSFILARLVVAASVLLGTPFWLFFYGVPTPSQSLI 67

Query: 324 ETVDKCPIP--FFVYSHGNLFYANPSFLLLTKYKS--VDDIEIAGGLS----TLLDAPKL 375
             + + P+     +   G L  A    L +  + +  V    +  G       LL    +
Sbjct: 68  FFLAQIPLISIVVLVRTGRLRLA--QSLSIFGWLAMAVAVHGLTEGYEIISIALLTIALV 125

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
                 + VM++  +   +   A    +++      ++           P  +    +  
Sbjct: 126 EAALTPEIVMVFVIEAATVDVLALTAGLRFPSPELTSIEHSTSIAMLAAPLLLYIAVVAI 185

Query: 436 EDVDTRINKRKMEIEVMQ-LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
             +     + + + +  + L  + +A  D +  ++R G + +      K +G    D++ 
Sbjct: 186 CAIRAENVRMRSDAQNARDLRLLTDAIGDIVLHLDRNGAVSTIVGDTHKTYGLDRRDLIG 245

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT---LGSTKEEKLLS----------L 541
           + F   +           +++        T        L +T   K +            
Sbjct: 246 RGFFQRVHIADRPAFLKLVSDAFDRARPTTAVLRVQVALAATASGKYVEPVFNYFDARMC 305

Query: 542 RIIIKKLPFSSC----------YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
           R         +               + D++  K+ +  ++ A+  +E+ ++ K+ FLA 
Sbjct: 306 RAEPIADDLETGIEENIETVVPVVCILRDVTAAKRAEEAIAAARAESERATASKTRFLAN 365

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           VSHE+RTPL AIIGFSE++ N    P    +  EYA  I  SG+ +L++VN +LD+SKIE
Sbjct: 366 VSHELRTPLNAIIGFSEMLANPELAPTDPGKQREYAEIISNSGHHLLEVVNTILDMSKIE 425

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
           SG M +  EP SL   + +   +VQL A++  + +   +  +I  ++AD R+ KQI LN+
Sbjct: 426 SGSMQIFPEPFSLPALIDQCCDMVQLKADQSAVTLLRDYRRDIDDLVADKRACKQILLNL 485

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           LSNA+ FTP+ G++ I         + + V D+G+G+   +L +   PF Q   S     
Sbjct: 486 LSNAVKFTPANGKVKIRLAPE-GNHLGISVIDSGIGIAPADLARLGDPFFQASASHDRTH 544

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           EGTGLGL + + +V  + G   + S P KGT + +  PL
Sbjct: 545 EGTGLGLSVVRGLVGLHGGSITVESAPRKGTSVTVRLPL 583


>gi|157363850|ref|YP_001470617.1| PAS/PAC sensor signal transduction histidine kinase [Thermotoga
           lettingae TMO]
 gi|157314454|gb|ABV33553.1| PAS/PAC sensor signal transduction histidine kinase [Thermotoga
           lettingae TMO]
          Length = 421

 Score =  316 bits (811), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 83/411 (20%), Positives = 169/411 (41%), Gaps = 33/411 (8%)

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM---EIEVMQLCSILEATSDG 464
           E          E A+   ++ P   +E      +  + ++   +       ++L++  D 
Sbjct: 27  EKYKRFVVRVAELADVPDDSPPYYVLESLRKKIKNLEDELSMAQKSRENTLTLLDSIMDP 86

Query: 465 IAIINRE-GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
           I  ++   G IL  N A  K+       +  +     LE      +     E +     Q
Sbjct: 87  ILFVDSSSGEILFANTAAQKM---SRPIVTTRKIYEALEDYY---LIEMFDEAVKSWHIQ 140

Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLP-FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES 582
               + +    +++  S ++    LP       + +HD++                 + +
Sbjct: 141 EGN-VVMHVEGKKRYYSCKMTPVLLPRGERRVVILLHDMT--------------KEYELN 185

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
             + +F++ VSHE+RTPLT+I G++E + N     +       +   I+     +  ++N
Sbjct: 186 EMRREFVSNVSHELRTPLTSIHGYAETLLNDPD--MDAETRDRFLKIIENESARMSRLIN 243

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702
           DLLD+ ++ESG+    F+ + L   V   +S+ +  + +  + +          I  D  
Sbjct: 244 DLLDLERLESGEARFDFQKIDLCSVVKYVVSITEPLSIDYDVKVEYDCEE--VTIDGDQD 301

Query: 703 SVKQIALNILSNAIHFT--PSGGQIIISTTHTSNE-EVILRVRDTGVGMTNYELEKAMKP 759
            + Q+ LN+  NA+ +T     G+  +S +      + ++RV DTG GM    L +    
Sbjct: 302 RLIQMLLNLADNAVKYTSLKESGEKKVSISVKKEGSQAVIRVSDTGPGMPRDALNRIFDR 361

Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           F ++   +  +  G+GLGL + K +VD + G+ ++ S P  GT   +  P+
Sbjct: 362 FYRVDKGRSRKMGGSGLGLSIVKTIVDRHNGQIFVESEPGAGTSFTVKLPV 412


>gi|46199084|ref|YP_004751.1| sensory transduction histidine kinase [Thermus thermophilus HB27]
 gi|46196708|gb|AAS81124.1| sensory transduction histidine kinase [Thermus thermophilus HB27]
          Length = 963

 Score =  316 bits (811), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 132/792 (16%), Positives = 247/792 (31%), Gaps = 90/792 (11%)

Query: 95  LKEISEELPKTIGNYAF-KMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIE 153
           +   S EL + +   A   ++   L +      +         L    T  G+   W   
Sbjct: 194 VSAASRELARALEPDAVMAVLAGILRERLGFYRVTVALVREGALVGHLTRRGEDLYWTEG 253

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
            + + +P+  +  P+    RE    R   +       +    +G  +      + E   G
Sbjct: 254 RSRIRLPVATSPDPMAQAVRE---RRTRIVPREALPPHLAEGVGASVAYVPVLVEEEALG 310

Query: 214 HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE 273
             +V+         +    ++ +   V+ +    A            L    +      E
Sbjct: 311 CVAVDHGPGGPPVTEEEVEYVELLAGVAGVALRNAQLYRERTALSLALAAERKRLSEVLE 370

Query: 274 D--------------------------------------FHTINLNQYTKKQYFGTLQNN 295
           +                                         +   +   +    T    
Sbjct: 371 ELPDGVVVLLGERGFANTRAREVLGVEAEVGLGDLPATLAPALEGGRAEVRLGGRTYSVR 430

Query: 296 SKESFEYL-----SHRNHPSLSAYFDEGENLTPETVDKCPIP------------------ 332
            +   E              +     E    T   VD                       
Sbjct: 431 GRRLGEMRVLVLHEITERVRMERALREQAAFTQALVDLAQEALSAPGLEALAAAIARRLQ 490

Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDD--IEIAGGLSTLLDA--PKLSDNNAIKPVMLYR 388
               +   L     + L L       +  +     L   L+   P + +  A     L  
Sbjct: 491 VLFGAEEALVGMAEAELRLLYATRPLEGPLPRPNLLERALEEGKPLVLETLAEGSCALAE 550

Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
           +     A         +     L         +           +    ++       +E
Sbjct: 551 AWGLRSALVIPFRAQGFKGGLLLGYRRPRRWASGWEGRLAQVGLLLALVLEKARLLAYLE 610

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF--LEQNTP 506
            E  +L ++LE + D + +++ E  I   + +V  + GY  E   R        +     
Sbjct: 611 AEEERLRALLEHSQDVVYVLDEEARIRFVSPSVGAVLGYDPEGYRRAALDALAFVHPEDQ 670

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQ 566
                   E+L+     TL        ++   + +    + L                  
Sbjct: 671 ERARALFQELLA-RPEATLRGEFRLLHQDGTPIPVEAWGRNLLKDP-----------RVG 718

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
                    +   +    K +FLA VSHE+RTPL AI+G +E+++ +   P       E 
Sbjct: 719 GVVVNVRDLRPRLEAERLKGEFLAAVSHELRTPLAAILGLAELLRQEPLPP----EAQES 774

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
              I  S   + ++V++LLD S++E+G+  +   PV L   + E     Q  A    +  
Sbjct: 775 VELILESAFRLKNMVDNLLDTSRLEAGRFEVSRRPVHLKPLLLELARSFQGVARLSGVEF 834

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
           R      +P +  D   + Q+  N+L+NA  FTP GG + +       EEV + V+DTG 
Sbjct: 835 RVEV-EELPLMEVDPDRIVQVVGNLLANAFKFTPPGGSVRLWAGVR-GEEVWVEVQDTGP 892

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+   E+ +  + + +  +       GTGLGL ++K +V+A+ G+  + S   KG+L  +
Sbjct: 893 GIPKEEIPRLFQRYARAKHPGVRGVAGTGLGLFISKHIVEAHGGRIEVESEEGKGSLFRV 952

Query: 807 IFPLYDTSHPHD 818
           I PLY   HP D
Sbjct: 953 ILPLYGP-HPGD 963



 Score = 38.1 bits (87), Expect = 6.4,   Method: Composition-based stats.
 Identities = 21/245 (8%), Positives = 61/245 (24%), Gaps = 7/245 (2%)

Query: 67  YLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS--DI 124
           YL++E   +   +  +    + +D    ++ +S  +   +G          L  ++    
Sbjct: 608 YLEAEEERLRALLEHSQDVVYVLDEEARIRFVSPSVGAVLGYDPEGYRRAALDALAFVHP 667

Query: 125 LHIDPNNHIGDLLKRQ--NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFG 182
              +    +   L  +   T  G+  L   +GT   +P++     +    R         
Sbjct: 668 EDQERARALFQELLARPEATLRGEFRLLHQDGTP--IPVEAWGRNLLKDPRVGGVVVNVR 725

Query: 183 IVHVNRVDNDPR-ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS 241
            +         +      +  +         G + + +++      Q     +       
Sbjct: 726 DLRPRLEAERLKGEFLAAVSHELRTPLAAILGLAELLRQEPLPPEAQESVELILESAFRL 785

Query: 242 SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301
                       L+  ++ +        P   +                 ++       E
Sbjct: 786 KNMVDNLLDTSRLEAGRFEVSRRPVHLKPLLLELARSFQGVARLSGVEFRVEVEELPLME 845

Query: 302 YLSHR 306
               R
Sbjct: 846 VDPDR 850


>gi|237712903|ref|ZP_04543384.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262409656|ref|ZP_06086196.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_22]
 gi|294643208|ref|ZP_06721035.1| PAS domain S-box [Bacteroides ovatus SD CC 2a]
 gi|294807177|ref|ZP_06765993.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b]
 gi|229447022|gb|EEO52813.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262352509|gb|EEZ01609.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_22]
 gi|292641444|gb|EFF59635.1| PAS domain S-box [Bacteroides ovatus SD CC 2a]
 gi|294445628|gb|EFG14279.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b]
          Length = 621

 Score =  316 bits (811), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 117/520 (22%), Positives = 204/520 (39%), Gaps = 40/520 (7%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
            S        E +        P+   +Y   G L   N   L +   ++ +DI       
Sbjct: 125 ASAHQALQNSERILHNIYKNLPVGIELYDREGRLIDLNKKELEMFHIRTKEDILGIN--- 181

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW-----NRENSLAMTFIPFEKAN 422
            L D P L D    K   L   +            +            L +        +
Sbjct: 182 -LFDNPVLPDEIKQK---LRDYENVDFTFRYDFSKVDSYYSPEKSTGFLDLVTKATTLYD 237

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN---REGI-ILSTN 478
              E +    I  +  +  I   K++        + +    G A  +   R+G  + S  
Sbjct: 238 HNHEPINYLLINVDKTEDTIAYNKIQEFESFFDLVGDYAKVGYAHFDALSRDGYALRSWY 297

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
           R V +  G P+ +I+             +VM  +L +++       L +           
Sbjct: 298 RNVGEEEGTPLPEIIG--IHSHFHPEDQAVMIDFLDKVVK-GESSKLCRDVRIRRANGNY 354

Query: 539 LSLRIIIK-----KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
              R+ +                   DI++ K+ +  L  AK+ AE+    KS FLA +S
Sbjct: 355 TWTRVNVLVRNYQPQDNIIEMLCINFDITQLKETERMLIGAKEKAEEADRLKSAFLANMS 414

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HEIRTPL AI+GFS    +            +Y   I+ +  L+L +++D+LD+SKIE+G
Sbjct: 415 HEIRTPLNAIVGFS----SLLEEAEDAEEKHQYVTIIEENNKLLLQLISDILDLSKIEAG 470

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL--ADLRSVKQIALNI 711
             ++  E V+  +  +E    +Q+ A  +   ++   A  +P ++  ++   + Q+ LN 
Sbjct: 471 TFDVIPEQVNAQQLCNELFQAMQMKATPQ---VKILLAPELPELIFTSNKNRLYQVLLNF 527

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           ++NA+ FT  G  III        EV   V+DTG+G+   + E     F ++ +      
Sbjct: 528 VTNALKFTSEGS-IIIDYRIN-GNEVRFSVKDTGIGIAPEKQEAIFTRFVKLNSFI---- 581

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
            GTGLGLP+ ++++    GK  + S P KG+      PL+
Sbjct: 582 PGTGLGLPICQSIITQLGGKIGVESEPGKGSCFWFTHPLH 621



 Score = 43.5 bits (101), Expect = 0.15,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 43/143 (30%), Gaps = 7/143 (4%)

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
           +       E +      + ++     L +I +    GI + +REG ++  N+   ++F  
Sbjct: 112 VYGIAETQEGIRIASAHQALQNSERILHNIYKNLPVGIELYDREGRLIDLNKKELEMFHI 171

Query: 488 -PVEDILRKPFT--VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
              EDIL         L       +  Y     +     +         K    L L   
Sbjct: 172 RTKEDILGINLFDNPVLPDEIKQKLRDYENVDFTFRYDFSKVDSYYSPEKSTGFLDLVTK 231

Query: 545 IKKLPFSSC----YSLTMHDISE 563
              L   +     Y L   D +E
Sbjct: 232 ATTLYDHNHEPINYLLINVDKTE 254


>gi|228924209|ref|ZP_04087480.1| hypothetical protein bthur0011_51800 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228835427|gb|EEM80797.1| hypothetical protein bthur0011_51800 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 613

 Score =  316 bits (811), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 83/372 (22%), Positives = 158/372 (42%), Gaps = 25/372 (6%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +  +   E E  +L S+L   +DG+   +R+G I+  N    K+     E  L +     
Sbjct: 258 QQARSSTESERRKLSSVLSHMTDGVIATDRKGDIILLNDPAEKMLNVSRETALDQSVLEV 317

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
           L       ++H   E  S+ L  +                  +I K+   ++     ++D
Sbjct: 318 LGIQEEFTLDHLYEEPDSVLLDFSTRNEPYILRAS-----FSVIQKETGKANGLIAVLYD 372

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           ++                E+    + +F+A VSHE+RTPLT +  + E + +  +     
Sbjct: 373 VT--------------EQERIERERREFVANVSHELRTPLTTMRSYLEALTDGAWQDPNI 418

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
                +          ++ +VN LL +SK++S +  L  E V   +  +  I   +  + 
Sbjct: 419 APQ--FLTVTQEETERMIRLVNALLQLSKLDSTEHRLMKEWVDFTDFFNNVIDRFE-MSK 475

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV-IL 739
           E+ +  + SF+     I  D   + Q+  NI+SNA+ ++P GG +          ++  +
Sbjct: 476 EQNVSFKRSFSKKSRFIDMDTDKITQVLYNIISNALKYSPEGGTVT--YRLRDRGDLLEI 533

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V D G+G+    ++K  + F ++  ++  +  GTGLGL +AK M++A+ G  +  S   
Sbjct: 534 SVSDQGMGIPKENVDKIFERFYRVDKARSRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEG 593

Query: 800 KGTLIEIIFPLY 811
           KGT I    P+ 
Sbjct: 594 KGTTIYFTLPMA 605


>gi|195940455|ref|ZP_03085837.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4024]
          Length = 777

 Score =  316 bits (811), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 86/435 (19%), Positives = 180/435 (41%), Gaps = 17/435 (3%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L            +L  +Q     +     I   +  +         ++ E
Sbjct: 81  EESRQRLSKLVDKLEEMRERDLKL-NVQLKDNIAQLNQEISDREKAEAERQTTLEQLKIE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             +  + + ++E +   L S L+A+ D +   N +      NRA+  L G   + ++   
Sbjct: 140 MKEREVTQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLIHLK 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCY 554
                 +   + +     ++   ++  T E+        +    +R +    ++      
Sbjct: 200 PQDVYSEEAAAKVMETDEKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGL 259

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+        +   E+ S  K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 260 MGFGRDITERKR-------YQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE 312

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     +Y   I  S   + +I ND++D+ K+E  K+ L  +PV     +++  +L
Sbjct: 313 LTS----EQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTGFLADLENL 368

Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
             L A +K +         +P  ++ D   ++QI  N++SNA+ FT  G Q+ +   +  
Sbjct: 369 SGLQAQQKGLSFVMEPTLPLPHKVVTDGTRLRQILWNLISNAVKFTQKG-QVAVRIRYDE 427

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMGKF 792
            + +   V D+G+G+   E +K    + Q+ +S   +   GTG+GL ++K +  +  G  
Sbjct: 428 GDMLHFEVEDSGIGIPQEEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSKRLAKSMGGDI 487

Query: 793 YIFSTPAKGTLIEII 807
            + S P KG+   + 
Sbjct: 488 TVASQPGKGSTFTLT 502



 Score = 43.5 bits (101), Expect = 0.17,   Method: Composition-based stats.
 Identities = 15/161 (9%), Positives = 38/161 (23%), Gaps = 8/161 (4%)

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIE 361
           +  +         ++  +     +D  P   F  +        N +  LLT       I 
Sbjct: 138 IEMKEREVTQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLI- 196

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                  L      S+  A K +           +      + +                
Sbjct: 197 ------HLKPQDVYSEEAAAKVMETDEKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYY 250

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
           ++  +     G   +  + +  +  +E       + +   S
Sbjct: 251 DRVGKRHGLMGFGRDITERKRYQDALERASRDKTTFISTIS 291


>gi|302061857|ref|ZP_07253398.1| PAS [Pseudomonas syringae pv. tomato K40]
 gi|302132156|ref|ZP_07258146.1| PAS [Pseudomonas syringae pv. tomato NCPPB 1108]
          Length = 1189

 Score =  316 bits (810), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 124/681 (18%), Positives = 239/681 (35%), Gaps = 58/681 (8%)

Query: 149 LWPIEGTNLYVPIDLAALPI--YSRNREFSGFRG--FGIVHVNRVDNDPRALGKRL---- 200
            W  +   + V ++ A  P+  +     F G       +V +             L    
Sbjct: 282 RWIAQHPVVRVVVNEAYAPLTFFDAKGNFRGITADLLELVRLRTGLKFDVKRSPSLTDMQ 341

Query: 201 ----DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256
               + +   +  +       ++  +      +    +  K+K S           +  T
Sbjct: 342 NQVSEGQADMIGALVSSDVREDRLSFSRPYIDNSFVLVTRKDKGSPSYLEQMDGKRLAIT 401

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
           +  P+L       P        N  Q       G  +                       
Sbjct: 402 QGSPMLDWLRRKYPRVVPLEIDNPFQALDMLAVGRTEGAVVSLLSADY------------ 449

Query: 317 EGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
                            F               L++   S + +E++  L   L +    
Sbjct: 450 -----------FLSSGIFEERLQMTATVGEDPALISMATSRNALELSSILDKALASIAPQ 498

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           D  AI       +            +  W+    L    +           +    +  +
Sbjct: 499 DLAAINNRWRAYTP----------SSASWHDYQRLIYQIVIGAGLLLLGLLVWNAWMRRQ 548

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
                  +R +  +   + ++++ T   I + +R+G++   N +  + F    EDI+ K 
Sbjct: 549 IRQREAAERALSDQYEFMRALVDGTPHPIYVRDRDGLLQMCNDSYLRAFSAQREDIIGKS 608

Query: 497 FTVFLEQNTPSV--MNHYLTEILSLDLRQTLEKITLGSTKEEKLL-SLRIIIKKLPFSSC 553
            T  +  N             +++ +    L++      ++  +   +      L     
Sbjct: 609 ATERVLGNAFEAREYAADYQRVMASNTALILDRPLHIGDRQLTIYHWILPFRDSLGEVQG 668

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
                 DIS+ +Q    L  AK+ A+  S  KS FLA +SHEIRTP+ A+IG  E+   +
Sbjct: 669 IIGGWIDISDRRQLIEDLQAAKEQADAASRAKSTFLATMSHEIRTPMNAVIGMLELALKR 728

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
                 +            S N +LD++ D+LDI++IESG++ L+ E  +L + V   + 
Sbjct: 729 ADQGELD---RSAIEVAYSSANDLLDLIGDILDIARIESGRLALNPERANLRQLVESVLR 785

Query: 674 LVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
           +    A +K + +     + I   +L D    KQI  N++SNAI FTP G ++ I+    
Sbjct: 786 VFDGLARQKDLDLVLELDSRINTDVLIDPLRFKQILSNLVSNAIKFTPMG-RVKIALQAV 844

Query: 733 SNE-----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
            N       + + V+D+G+G++  + ++  +PF Q  N+ Q+   G GLGL + +++   
Sbjct: 845 DNPDPQLLHLHITVQDSGIGISVEDQKRLFEPFAQADNTGQMARTGAGLGLVICRSLCMM 904

Query: 788 NMGKFYIFSTPAKGTLIEIIF 808
             G   + S P  GT I +  
Sbjct: 905 MGGNLSLDSEPGNGTRISMNL 925



 Score = 40.4 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 29/231 (12%), Positives = 57/231 (24%), Gaps = 8/231 (3%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCD--VSDILHIDPNNHIGDLLKRQNTWYGKT 147
           D  G L+  ++   +        +IG    +  + +             +   NT     
Sbjct: 581 DRDGLLQMCNDSYLRAFSAQREDIIGKSATERVLGNAFEAREYAADYQRVMASNTALILD 640

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
               I    L +   +  LP      E  G  G  I              +   ++    
Sbjct: 641 RPLHIGDRQLTIYHWI--LPFRDSLGEVQGIIGGWI--DISDRRQLIEDLQAAKEQADAA 696

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
              K    +    +            L +  K +   E      +V  +    LL     
Sbjct: 697 SRAKSTFLATMSHEIRTPMNAVI-GMLELALKRADQGELDRSAIEVAYSSANDLLDLIGD 755

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
            L +     +  L    ++     L  +    F+ L+ +    L    D  
Sbjct: 756 IL-DIARIESGRLALNPERANLRQLVESVLRVFDGLARQKDLDLVLELDSR 805


>gi|259417433|ref|ZP_05741352.1| histidine kinase [Silicibacter sp. TrichCH4B]
 gi|259346339|gb|EEW58153.1| histidine kinase [Silicibacter sp. TrichCH4B]
          Length = 753

 Score =  316 bits (810), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 107/454 (23%), Positives = 189/454 (41%), Gaps = 22/454 (4%)

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
           L    L++  A +      ++R      A L           A+       A Q      
Sbjct: 4   LAQMSLAEKLAQERRARLAAERLLELKQAELTDANRKLGR-HALALTKRIGATQAEIATF 62

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
           +N  E    D      K+E    +L   ++A  DG A  +    ++  N A   +F    
Sbjct: 63  RNENERVKSDLNTANEKVEQAERRLWHSIQAFQDGFAFFDSNSKLIGANTAYLNIFEGVE 122

Query: 490 EDILRKPFTVFLE-------QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
           E      +   L+        +T  +       +++        + T+     ++ L L 
Sbjct: 123 EVAPGVSYVRILQVLTDEGLIDTEELSADAWRAMMTERWMSPAPEPTVIRLWNDRYLKL- 181

Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
             I +            DI+     + +L  A++ AE  +  KS FLA +SHEIRTP+  
Sbjct: 182 --IDQRGHDGDIVSLALDITATVHYEEELRTARERAEAANRAKSAFLANMSHEIRTPMNG 239

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           ++G +E++ +             YAN I  SG  +L I+ND+LD SKIE+ K+ LH EP 
Sbjct: 240 VVGMAELLNDTSL----TEEQRLYANTIKNSGEALLVIINDVLDYSKIEAEKLVLHPEPF 295

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPS 721
            L+  + E + L+Q  A +K + +   +   +P   + D   ++QI  N++ NA+ FT  
Sbjct: 296 DLEACMHEVVMLLQANARDKGLTLLVDYDLFMPTSFIGDPGRIRQILTNLIGNAVKFTNQ 355

Query: 722 GGQIIISTT---HTSNEEV--ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
           G  +    T   H  +  V   + + D+G+G+   +++     F Q+ +    + EGTGL
Sbjct: 356 G-HVTARVTGVPHPEDNTVMLHISIEDSGIGIPEEKIQHIFGEFNQVEDETNRQFEGTGL 414

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           GL + + ++    G+ ++ S   KG+      PL
Sbjct: 415 GLAITERLIKMMDGEIWVESEFGKGSCFGFRLPL 448


>gi|160882322|ref|ZP_02063325.1| hypothetical protein BACOVA_00270 [Bacteroides ovatus ATCC 8483]
 gi|156112236|gb|EDO13981.1| hypothetical protein BACOVA_00270 [Bacteroides ovatus ATCC 8483]
          Length = 810

 Score =  316 bits (810), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 103/513 (20%), Positives = 194/513 (37%), Gaps = 36/513 (7%)

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
               D  E +        P    +Y   G L   N   L +      ++         L 
Sbjct: 314 RLALDNSEKILRNIYKNLPAGVELYDKDGYLVDINDKELEIFGLSDKNEALGVN----LF 369

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARL----HTIQWNRENSLAMTFIPFEKANQFPE 426
           D P +      +   L   +    + +         +   R   + +T       +    
Sbjct: 370 DNPNIPLEVKER---LRAKEDVNFSINYDFSKINQYVDSRRNGIINLTTKVTALYDSQNR 426

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA---IINREGIILSTNRAVSK 483
            +    I  +  +T     K++        I +    G A   ++ R+G          +
Sbjct: 427 FINYLFINIDTTETTNAYTKIQEFENLFLLIGDYAKVGFAHFNVLTRDG---YAQDTWYR 483

Query: 484 LFGYPVEDILRKPFTVFLE--QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS- 540
             G      + +   V+        +V+ +++ E+       +L K      +  K    
Sbjct: 484 NLGEKEGTPMPQVIGVYAHVVPEDQAVLKNFVGEV-KTGKATSLRKEVRVCRENGKYTWT 542

Query: 541 -LRIIIKKLPFSSCYS---LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
            + ++++               +DI+  K+ + KL  A+  AE+    KS FLA +SHEI
Sbjct: 543 SINVMVRDYRPQDGIIEMLCINYDITPLKETEQKLIIARDKAEELDRLKSAFLANMSHEI 602

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTPL AI+GFS ++              EY   +  +  L+L +++D+LD+SKIE+G  N
Sbjct: 603 RTPLNAIVGFSSLLAETD----SRSERQEYIKIVQENNELLLQLISDILDLSKIEAGTFN 658

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716
             +  V ++E  +E I  + +    K + +          +  D     Q+  N ++NA+
Sbjct: 659 FVYTNVDVNETCTEIIKSMSMKV-SKGVELIFEEPLLECYLYTDKNRFTQVISNFINNAL 717

Query: 717 HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
            FT  G  I +     S++++   VRDTG+G+   + +   + F ++        +GTGL
Sbjct: 718 KFTQQGS-ITLGYEQVSHQKIKFYVRDTGMGIPEEKQKSIFERFVKLNTF----VQGTGL 772

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GL + K++V    G+  + ST   G+      P
Sbjct: 773 GLSICKSIVSQMGGEIGVDSTEGIGSCFWFTHP 805


>gi|217976854|ref|YP_002361001.1| multi-sensor signal transduction histidine kinase [Methylocella
           silvestris BL2]
 gi|217502230|gb|ACK49639.1| multi-sensor signal transduction histidine kinase [Methylocella
           silvestris BL2]
          Length = 859

 Score =  316 bits (810), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 119/731 (16%), Positives = 255/731 (34%), Gaps = 58/731 (7%)

Query: 121 VSDILHIDPNNHIGDLLKRQNTWYGKTTL---WPIEGTNLYVPIDLAAL----------- 166
           V       P       L  ++           W +  +   + + +A L           
Sbjct: 126 VWRGADDQPEVEGDLALLAEDPQRRLPLAFGSWLVAASAQELGVRVADLRARGAAFRAAV 185

Query: 167 -PIYSRNREFSG--FRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYD 223
             +  R+ +  G    G  ++ +  V  +     + L +  +      K   ++     +
Sbjct: 186 ATLDGRHLDVEGRPLDGVAVMRIRDVSAERMEAIR-LQELEARAKGELKALWAMLDASPN 244

Query: 224 IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY 283
               +     L + N   +     A  D+ +      L      +  E      +   + 
Sbjct: 245 PAWLRDGEGRLTLVNSAYARAVEAADPDEAVARNVELLEKPAREASREARATGAVWRGRA 304

Query: 284 TKKQYFGTLQNNSKESFE----------------YLSHRNHPSLSAYFDEGENLTPETVD 327
                      +  ++                                +  +     T+D
Sbjct: 305 PAVVVGERRLFDVIDAPSGEAVAAGSAAPASVGMASDVTELQGARDALEREKQAHARTLD 364

Query: 328 KCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
           +      ++ H   L + N ++  L        ++     S +LD  + +     +    
Sbjct: 365 QLSTAVVIFDHSKRLVFHNAAYRQLWGL-DQAWLDEKPTDSEILDRLRAARLIPEQTDFR 423

Query: 387 YRSDRTCIAA---SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
              +    A               E +L +   P               +  +  +    
Sbjct: 424 VWKEGLLAAYQSIETEEQAWYLPDERTLRIVINPNP-------QGGVTYLYDDVTERFRL 476

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
           + +    +      L+   +G+A+   +G +   N A ++L+    + +  +P    + +
Sbjct: 477 ESQFNAAIRVQSETLDTLKEGVAVFGSDGRLKLFNPAFAELWSLDPDQLGDQPHIDRVAE 536

Query: 504 NTPSVMNHY-----LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM 558
               +         L  +++    Q L      + ++  +L                +T 
Sbjct: 537 LCAPLFMQEGDWNELRAVVAGLQDQRLGYENRLARRDGAVLDCAAAPLP---DGATLITF 593

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            D +     +  L+   +   +    ++DF+  VS+E+R+PLT IIGF +++ +   GPL
Sbjct: 594 IDATAGVNVERALTERNQALIEAERLRNDFVHHVSYELRSPLTNIIGFIQLLGDPSVGPL 653

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
            NPR +EYA Y+ +S + +L I+ND+LD++ I++  M L  E + + E +  A   ++  
Sbjct: 654 -NPRQLEYAGYVTKSSSALLAIINDILDLASIDADAMELSLEEIDVAETMRAAAEGLEDR 712

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738
             E  + +      ++   +AD + ++QI +N+LSNAI F+  G  I +       EE++
Sbjct: 713 VAEAGLTLSVIPMQDLGFFIADGKRIRQILMNLLSNAIGFSAPGSAIGL-AALRRGEEIV 771

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
            +V D G G+    ++     F +   S      G GLGL +A++ V+ + G+  I S  
Sbjct: 772 FKVSDQGRGIPREVVDHIFDRF-KTHTSGSR-HRGVGLGLSIARSFVELHGGRILIDSAL 829

Query: 799 AKGTLIEIIFP 809
            +GT +  IFP
Sbjct: 830 GEGTTVTCIFP 840



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/387 (10%), Positives = 95/387 (24%), Gaps = 31/387 (8%)

Query: 87  WNIDAHGYLKEISEELPKTI-GNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
           W  D  G L  ++    + +      + +   +  +             +       W G
Sbjct: 247 WLRDGEGRLTLVNSAYARAVEAADPDEAVARNVELLEKP----AREASREARATGAVWRG 302

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYS-RNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
           +    P          D+   P         +     G+          R   +R  +  
Sbjct: 303 RA---PAVVVGERRLFDVIDAPSGEAVAAGSAAPASVGMASDVTELQGARDALEREKQAH 359

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
           +   +       +      +    +    L   ++     +      ++L   +   L  
Sbjct: 360 ARTLDQLSTAVVIFDHSKRLVFHNAAYRQLWGLDQAW--LDEKPTDSEILDRLRAARLIP 417

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE------------YLSHRNHPSLS 312
           E++     ++           ++    L +                   Y        L 
Sbjct: 418 EQTDFRVWKEGLLAAYQSIETEEQAWYLPDERTLRIVINPNPQGGVTYLYDDVTERFRLE 477

Query: 313 AYFDEGENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL-- 369
           + F+    +  ET+D       V+ S G L   NP+F  L      D +     +  +  
Sbjct: 478 SQFNAAIRVQSETLDTLKEGVAVFGSDGRLKLFNPAFAELWSL-DPDQLGDQPHIDRVAE 536

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
           L AP          +    +              + +      +        +       
Sbjct: 537 LCAPLFMQEGDWNELRAVVAGLQDQRLGYENRLARRDGA---VLDCAAAPLPDGATLITF 593

Query: 430 QNGIEPEDVDTRINKR-KMEIEVMQLC 455
            +     +V+  + +R +  IE  +L 
Sbjct: 594 IDATAGVNVERALTERNQALIEAERLR 620


>gi|300811608|ref|ZP_07092088.1| PAS domain S-box protein [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300497403|gb|EFK32445.1| PAS domain S-box protein [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 635

 Score =  316 bits (810), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 87/397 (21%), Positives = 172/397 (43%), Gaps = 36/397 (9%)

Query: 426 ENMPQNGIEPEDVDTRINK--RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           + + Q G     +  +I +   + E E  +L S+L   +DG+   +R G +   N+    
Sbjct: 249 DELGQLGAAFNTLSVKIERSNEQSESERRRLDSVLSHMTDGVIATDRHGNVSIMNQMAQD 308

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
                 ED ++KP +  L           ++       +  ++      T +E +L    
Sbjct: 309 FLDVKAEDAIKKPISQVLGLGEDYTSQDLISN------QSDMQVTVNAGTDDEIILHASF 362

Query: 544 IIKK--LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
            + K    F S     +HD++E  + +++              +  F++ VSHE+RTPLT
Sbjct: 363 TLIKRVTGFVSGAVCVLHDVTEQIKNEDE--------------QRQFVSNVSHELRTPLT 408

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           ++  + E +    +         ++ +   +    ++ +VNDLL +S+++ G   L  E 
Sbjct: 409 SVRAYIEALNEGAW--KDPEIAPQFLDVTQKETERMIRMVNDLLVLSRMDRGATKLEPEW 466

Query: 662 VSLDEAVSEAISLV---------QLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712
           V+  + VS  ++           +  ++ K  +I+    N    +  D   + ++  NI+
Sbjct: 467 VNFTDFVSHLLNRFDMIVEHDQGEAQSDTKEYVIKRDLGNQALWVEIDTDQMMRVIDNIM 526

Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           +NAI ++P GG I +  T   N +++L + D G+G+   +L K    F +   ++     
Sbjct: 527 NNAIKYSPDGGTITVRLTQNQN-QILLSISDQGLGIPRKDLGKIFDRFYRADKARSRAQG 585

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GTGLGL +AK +V A+ G+ +  S    G+   I  P
Sbjct: 586 GTGLGLAIAKEIVTAHGGRIWADSREGHGSTFYIALP 622


>gi|300087415|ref|YP_003757937.1| PAS/PAC sensor signal transduction histidine kinase
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527148|gb|ADJ25616.1| PAS/PAC sensor signal transduction histidine kinase
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 506

 Score =  316 bits (810), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 93/520 (17%), Positives = 187/520 (35%), Gaps = 37/520 (7%)

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEI 362
                        +         ++      +    G +  AN +   L      +    
Sbjct: 9   QPSRDDIEKRLLSDPVVTFRTMFERSGTAKAILNREGIIVMANETLARLVDMSVREIEGK 68

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
                 +    +     A +   L RS                N  +      +      
Sbjct: 69  HSWFEFV---AEPDRRKAQEYHNLRRSHPGLAPERYEFILADQNGASHDIEINVAV---- 121

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
            FP N        +    +  +    +        +E   + +  ++ +G IL  N A +
Sbjct: 122 -FPGNDLSLLSMVDVTHLKTAQEMGRLT----RFAVENAGEAVFWLDEKGRILYANAAAT 176

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
           +L GY +  ++ +         +       L ++   D   ++   +     + ++L + 
Sbjct: 177 RLLGYNIGVLMSRSIQEIDVGTSKRDWKRKLADLRQSD---SMLWESEYRRSDGRVLPVE 233

Query: 543 I--IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS--DFLARVSHEIRT 598
           +     +L   S Y   + DISE ++   + S  +          S  +  A V+HEI  
Sbjct: 234 VLISFIQLAEKSYYWAFVRDISERREAAERESQLQSELNMSGRLASVGELAAGVAHEINN 293

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
           PLT IIGFSE +  +      + +       I         +V +LL  ++    +    
Sbjct: 294 PLTGIIGFSERLMRKCR----DDKMTTDLKRIHSEAQRAAKVVQNLLTFAR----QREPR 345

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA--- 715
            E V ++E ++E++ L +    +  I + T  A ++P I AD   ++Q+ +N++ NA   
Sbjct: 346 KESVDINEILTESLELREYELRQLGIQVVTHLA-DLPNIEADYYQLEQVFVNLIINAEQA 404

Query: 716 IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           I  +  G ++I+S+    +  +++ V D G G+   + E+   PF            GTG
Sbjct: 405 ITASGKGDRLIVSSG-EMDGNIVVAVADNGPGIKPRDQERIFDPFFTTRGD----AGGTG 459

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
           LGL +   +V+ + G+  + S   +GT   +I PLY   +
Sbjct: 460 LGLSICHGIVEEHGGRISVTSELGEGTTFTVILPLYPEEN 499



 Score = 42.7 bits (99), Expect = 0.24,   Method: Composition-based stats.
 Identities = 10/142 (7%), Positives = 44/142 (30%), Gaps = 6/142 (4%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + +D  G +   +    + +G     ++   + ++               L++ ++   
Sbjct: 159 VFWLDEKGRILYANAAATRLLGYNIGVLMSRSIQEIDVGTSKRDWKRKLADLRQSDSMLW 218

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           ++     +G  L V + ++ + +  ++        +  V       +      +L  + +
Sbjct: 219 ESEYRRSDGRVLPVEVLISFIQLAEKS------YYWAFVRDISERREAAERESQLQSELN 272

Query: 206 HLHEIKKGHSSVEKEKYDIFSQ 227
               +           ++I + 
Sbjct: 273 MSGRLASVGELAAGVAHEINNP 294


>gi|325262754|ref|ZP_08129490.1| sensor histidine kinase/response regulator [Clostridium sp. D5]
 gi|324031848|gb|EGB93127.1| sensor histidine kinase/response regulator [Clostridium sp. D5]
          Length = 899

 Score =  316 bits (810), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 110/584 (18%), Positives = 216/584 (36%), Gaps = 42/584 (7%)

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
           Y  + D +K     +L  +E+S                 +         S       +  
Sbjct: 51  YTTEFDNIKNSASEVLCKKEASFTADFPLPLKQGGHTWNRITGTFTGEISDGHPVISAVL 110

Query: 307 NHPSLS-AYFDEGENLTPETVDKCPIPFFVYSHG--NLFYANPSFLLLTKYKSVDDIEIA 363
              S   A  +E        +DK     ++       L Y N                  
Sbjct: 111 TDISSLVAQSEEKVQYFQWMMDKYVGNVYISDMDTYELLYVNDEA--------------- 155

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ-WNRENSLAMTFIPFEKAN 422
             L TL    +          +  R+       + RL T + +  E    +    F   N
Sbjct: 156 --LETLRSTKEKVSGRKCYEAIQGRTSPCPFCTNDRLRTDEFYEWEFYNPVLKRTFMIKN 213

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG--IILSTNRA 480
           +               D    + K+  +  +  ++L     G   ++      +L     
Sbjct: 214 RLINWYGHKARIELSHDMYSAEYKLAKKDQERETLLRTIPGGFMRLDARDLSTVLWYGAD 273

Query: 481 VSKLFGYPVE--DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
             ++ GY  E  +        ++  +    ++  L ++         E   +  + E K 
Sbjct: 274 FLRIIGYTKEQFETELHSQCSYIHPDDKERIHILLKKMQHTGRNTVTEARVITRSGEVKT 333

Query: 539 LSLRI----IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK----ESSHKSDFLA 590
            +L +              +     D++E ++E+ +   A + A +     +S K++FL+
Sbjct: 334 QTLTLYYEDSESSWDGIPSFYSVCIDVTEDRREQERQRRALEDAYQTAKVANSAKTNFLS 393

Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650
            +SH+IRTP+ AI+G + + +     P    R  +  N I+ S   +L ++N++LD+SKI
Sbjct: 394 SMSHDIRTPMNAIMGMAAIAQANLAEP---ERVRDCLNKINVSSRHLLSLINEVLDMSKI 450

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILADLRSVKQIAL 709
           ESGK++L  E V+L E +     + +    EK++  + S +     +++ D   ++Q+ +
Sbjct: 451 ESGKIDLLPEEVNLPELIQNVSDMCKPLIAEKQLDFKISVSYVRHEKVITDGDRMQQVLM 510

Query: 710 NILSNAIHFTPSGGQIIISTTH-----TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764
           N+LSNAI +TP GG + +             +    V D G+GM    +     PF +  
Sbjct: 511 NLLSNAIKYTPDGGTVSLRIKEIPSITDKKGQFEFIVTDDGIGMPEDFIPLIFDPFSRAE 570

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           +S+  + +GTGLG+ + + +V    G   + S   KG+   +  
Sbjct: 571 DSRISKIQGTGLGMAITENIVRMMNGSIEVTSQMEKGSTFTVTL 614


>gi|170731064|ref|YP_001776497.1| histidine kinase/response regulator hybrid protein [Xylella
           fastidiosa M12]
 gi|167965857|gb|ACA12867.1| histidine kinase/response regulator hybrid protein [Xylella
           fastidiosa M12]
          Length = 558

 Score =  316 bits (810), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 94/483 (19%), Positives = 179/483 (37%), Gaps = 35/483 (7%)

Query: 338 HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397
            G     N SF    +  SV          ++           IK           +   
Sbjct: 71  DGIFRLTNASFGRHLRLDSV-------VGESVCGIMPDDGPEYIKRYGGVALSGQRVHFE 123

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
           AR    +W         +         PE      +  +  + +  +R++    ++   +
Sbjct: 124 ARALR-RW---------YSVEVMRVGAPEGRLLGVLFVDITEHKRMERRLAESEVRFNIL 173

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
            +     + + + +G +   N A  + FG  +       +++ L      +    L+  L
Sbjct: 174 ADGLPMPVWVFDAQGGMRFVNTAYGEFFGVDLSSGTVPEWSMVLHPEDVLIFEFKLSAAL 233

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH----DISEWKQEKNKLSH 573
               +  L  +      + +   + +          + + +     D++E  + +     
Sbjct: 234 KT--QSALRALVRARRYDGQWRWIEMSATPRYSPDGHFIGLTGNSPDVTERLEIELVREQ 291

Query: 574 -------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
                  A+  AE  +  K +FL+ +SHE+RTPLT I+G+SE++  +      +P Y   
Sbjct: 292 LLKSERAARNEAENMARLKDEFLSTLSHELRTPLTTILGWSELLLQRI--EEQHPCYKG- 348

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
            + I  S  +   +++D+LD+S +  GKM L  E + L E + E I L +     K   +
Sbjct: 349 LSVIASSAKVQKRLISDMLDLSSMLLGKMQLEMEVLDLVEQIREVIGLYEQVVESKGQRL 408

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
                     +L D   ++QI  N+LSNAI FTP+ G I +       +   + V D+G 
Sbjct: 409 LLRAPEMPCLVLGDATRLRQIFENLLSNAIKFTPTDGCIDVEID-ADGDSFRVSVTDSGD 467

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIE 805
           G+    L      F Q   +      G GLGL + +++V+ + G     S    KG +  
Sbjct: 468 GIAAEFLPHLFSRFRQADGTTTRCHGGLGLGLAIVQSLVEMHGGYVGATSPGLGKGAMFT 527

Query: 806 IIF 808
           +  
Sbjct: 528 VSL 530



 Score = 61.2 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 26/170 (15%), Positives = 52/170 (30%), Gaps = 6/170 (3%)

Query: 68  LDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI 127
            +SE  F        +   W  DA G ++ ++    +  G             V     +
Sbjct: 164 AESEVRFNILADGLPMP-VWVFDAQGGMRFVNTAYGEFFGVDLSSGTVPEWSMVLHPEDV 222

Query: 128 DP-NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHV 186
                 +   LK Q+           +G   +  I+++A P YS +  F G  G      
Sbjct: 223 LIFEFKLSAALKTQSALRALVRARRYDG--QWRWIEMSATPRYSPDGHFIGLTGNSP--D 278

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM 236
                +   + ++L K         +  + ++ E     S +   P   +
Sbjct: 279 VTERLEIELVREQLLKSERAARNEAENMARLKDEFLSTLSHELRTPLTTI 328



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/207 (11%), Positives = 50/207 (24%), Gaps = 14/207 (6%)

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL--SHRNHPSLSAYFDEGENLT 322
              +L  Q         +         +          L      H  +     E E   
Sbjct: 111 GGVALSGQRVHFEARALRRWYSVEVMRVGAPEGRLLGVLFVDITEHKRMERRLAESEVRF 170

Query: 323 PETVDKCPIPFFVYSH-GNLFYANPSFLLLTK----------YKSVDDIEIAGGLSTLLD 371
               D  P+P +V+   G + + N ++               +  V   E        L 
Sbjct: 171 NILADGLPMPVWVFDAQGGMRFVNTAYGEFFGVDLSSGTVPEWSMVLHPEDVLIFEFKLS 230

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT-FIPFEKANQFPENMPQ 430
           A   + +     V   R D                  + + +T   P        E + +
Sbjct: 231 AALKTQSALRALVRARRYDGQWRWIEMSATPRYSPDGHFIGLTGNSPDVTERLEIELVRE 290

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSI 457
             ++ E       +    ++   L ++
Sbjct: 291 QLLKSERAARNEAENMARLKDEFLSTL 317


>gi|270308781|ref|YP_003330839.1| sensor histidine kinase/response regulator [Dehalococcoides sp. VS]
 gi|270154673|gb|ACZ62511.1| sensor histidine kinase/response regulator [Dehalococcoides sp. VS]
          Length = 737

 Score =  316 bits (810), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 103/513 (20%), Positives = 195/513 (38%), Gaps = 42/513 (8%)

Query: 313 AYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSV---DDIEIAGGLST 368
             F       P  + +      V+     L   NP+   +T   +     ++     LS 
Sbjct: 116 KLFKTIPFAYPLILQQMNDGVLVFDRSNRLLETNPAACKMTGLDNTMVGQELNNLCHLSP 175

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
           LL+              L  ++   +   +              +   P    ++    +
Sbjct: 176 LLE-------------CLAIANFGHLDFESATRVK----GKFYELDKQPLL--DKQQRQV 216

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
                  +    +   ++++    Q  +++E  +DGI I+ + G+++  N  + +L GYP
Sbjct: 217 GWLATIRDISQRKQTAQELKERKEQYFTLVEHGNDGIIIV-QNGLVVYANSKMKELSGYP 275

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLT-EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
           +++IL K F  F+      ++  +    +    L    E   +    +E  + +   + +
Sbjct: 276 MDEILEKQFAQFVPAEQRDMLEQHYQKRVEGQKLCGRYEACLINKKGQEVYVEISASLIE 335

Query: 548 LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS--HKSDFLARVSHEIRTPLTAIIG 605
                     + D++  KQ + +    +  AE  S      +  A ++HEI  PLT +IG
Sbjct: 336 YEGQPADMAIIRDLTADKQAELENQRLRDKAEMASRLAAIGEMAAGIAHEINNPLTGVIG 395

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
           FSE++  +   P      +     I+     V++IV  LL  ++    +       + + 
Sbjct: 396 FSELLATREDLPKD---VMADLQVINHGSQRVVEIVRRLLTFAR----QNKPVKTLLDVH 448

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT---PSG 722
           E +   +           I I   +  N+P I AD   ++Q+ LN++ NA         G
Sbjct: 449 ELIDNTLEFRGYVFKTANIEIIRRYDLNLPWITADPGQLQQVFLNLIINAEQAMRKAHDG 508

Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
           G++ I+T  T N+   +R+ D G GMT     K  +PF      +    EGTGLGL LA 
Sbjct: 509 GKLTITTAQT-NKFFSIRIADDGPGMTAEIKAKIFQPFFTTKGPK----EGTGLGLSLAM 563

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
           A++  + G   + S   KG    I  PL   + 
Sbjct: 564 AIILDHHGTIDVESEYDKGATFTINLPLNSDAE 596



 Score = 43.5 bits (101), Expect = 0.15,   Method: Composition-based stats.
 Identities = 27/202 (13%), Positives = 52/202 (25%), Gaps = 15/202 (7%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151
           +G +   + ++ +  G    +++  +          D                G+     
Sbjct: 258 NGLVVYANSKMKELSGYPMDEILEKQFAQFVPAEQRDMLEQHYQKRVEGQKLCGRYEACL 317

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRG-FGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
           I      V ++++A  I     E+ G      I+     D       +RL  K      +
Sbjct: 318 INKKGQEVYVEISASLI-----EYEGQPADMAIIRDLTADKQAELENQRLRDKAEMASRL 372

Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270
                  E          +P         V   +E  A ++D+ K     L      S  
Sbjct: 373 AAI---GEMAAGIAHEINNPLTG------VIGFSELLATREDLPKDVMADLQVINHGSQR 423

Query: 271 EQEDFHTINLNQYTKKQYFGTL 292
             E    +       K     L
Sbjct: 424 VVEIVRRLLTFARQNKPVKTLL 445


>gi|329997600|ref|ZP_08302870.1| aerobic respiration control sensor protein ArcB [Klebsiella sp. MS
           92-3]
 gi|328538976|gb|EGF65028.1| aerobic respiration control sensor protein ArcB [Klebsiella sp. MS
           92-3]
          Length = 779

 Score =  316 bits (810), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 86/435 (19%), Positives = 178/435 (40%), Gaps = 16/435 (3%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L            +L  +Q     +     I   +  +         ++ E
Sbjct: 81  EESRQRLSRLVDKLEEMRERDLKL-NVQLKDNIAQLNQEIGEREKAEAERETTLEQLKIE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             +    + ++E +   L S L+A+ D +   N +      NRA+  L G   + ++   
Sbjct: 140 MKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLIHLK 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCY 554
                 +     +     ++   ++  T E+        +    +R +    ++      
Sbjct: 200 PQDVYSEEAAEKVLETDEKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRRGL 259

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+        +   E+ S  K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 260 MGFGRDITERKR-------YQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE 312

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     +Y   I  S   + +I ND++D+ K+E  K+ L  +PV     +++  +L
Sbjct: 313 LTS----EQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENL 368

Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
             L A +K +      +  +P  ++ D   ++QI  N++SNA+ FTP GG + +   +  
Sbjct: 369 SGLQAQQKGLRFVLEPSLPLPHKVITDGPRLRQILWNLISNAVKFTPQGGGVNVRVRYDE 428

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMGKF 792
            + +   V D+G+G+   E +K    + Q+ +S   +   GTG+GL +++ +     G  
Sbjct: 429 GDILHFEVEDSGIGIPEAEQDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLARNMGGDI 488

Query: 793 YIFSTPAKGTLIEII 807
            + S P KG    + 
Sbjct: 489 SVTSQPGKGATFTLT 503



 Score = 44.2 bits (103), Expect = 0.095,   Method: Composition-based stats.
 Identities = 15/161 (9%), Positives = 38/161 (23%), Gaps = 8/161 (4%)

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIE 361
           +  +         ++  +     +D  P   F  +        N +  LLT       I 
Sbjct: 138 IEMKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLI- 196

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                  L      S+  A K +           +      + +                
Sbjct: 197 ------HLKPQDVYSEEAAEKVLETDEKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYY 250

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
           ++  +     G   +  + +  +  +E       + +   S
Sbjct: 251 DRVGKRRGLMGFGRDITERKRYQDALERASRDKTTFISTIS 291


>gi|89901133|ref|YP_523604.1| PAS/PAC sensor hybrid histidine kinase [Rhodoferax ferrireducens
           T118]
 gi|89345870|gb|ABD70073.1| PAS/PAC sensor hybrid histidine kinase [Rhodoferax ferrireducens
           T118]
          Length = 602

 Score =  316 bits (810), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 98/390 (25%), Positives = 195/390 (50%), Gaps = 11/390 (2%)

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
            + Q  +E ++ + R  ++++E    +   + +    G   ++  G+IL  N   + L G
Sbjct: 62  AVHQIELEMQNDELRRVQQELETSRARYFDLYDLAPVGYITVSDAGMILEANLTAATLLG 121

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
            P   ++++P + F+ ++   +   Y  +++     QT E   L S      +SL   + 
Sbjct: 122 VPRSALVKRPISRFIVKSQQDIYYQYRKQLVETGQAQTCELQVLHSEGSALWVSLAATVA 181

Query: 547 KLPFSSCYS-LTMHDISEWKQEKNKLSHAKK-------IAEKESSHKSDFLARVSHEIRT 598
           +    +    + ++DISE K     L            +A+K +  KS+FL+ +SHE+R+
Sbjct: 182 QETDGATILRIVLNDISERKLLDQSLRETNVKLESALFLADKANLAKSEFLSGMSHELRS 241

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
           PL A++GF+++I  +   P   P        I R G  +L ++N++LD+S +ESGK++L 
Sbjct: 242 PLNAVLGFAQLI--ETGTPAPTPGQQASLEQILRGGWYLLTLINEILDLSLVESGKLSLS 299

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718
            EPV L E  S+  +++   A +  I +  +  ++   + AD   +KQ+ +N+LSNAI +
Sbjct: 300 MEPVLLSEKFSDCRAMIDPQAQKAGIRVSFASFDSPCFVEADRTRLKQVIVNLLSNAIKY 359

Query: 719 TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
             +GG + ++ +  +   + + V DTG G+++ +L +  +PF ++   +    EGTG+GL
Sbjct: 360 NRAGGSVEVTCSTPAAGRIRISVIDTGPGLSDNKLAQLFQPFNRL-GQEAGTQEGTGIGL 418

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            + K +V+   G+  + S    G+      
Sbjct: 419 VVCKRLVEMMGGEIGVHSRVGIGSEFWFEL 448


>gi|331016191|gb|EGH96247.1| PAS protein [Pseudomonas syringae pv. lachrymans str. M302278PT]
          Length = 1189

 Score =  316 bits (810), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 124/681 (18%), Positives = 239/681 (35%), Gaps = 58/681 (8%)

Query: 149 LWPIEGTNLYVPIDLAALPI--YSRNREFSGFRG--FGIVHVNRVDNDPRALGKRL---- 200
            W  +   + V ++ A  P+  +     F G       +V +             L    
Sbjct: 282 RWIAQHPVVRVVVNEAYAPLTFFDAKGNFRGITADLLELVRLRTGLKFDVKRSPSLTDMQ 341

Query: 201 ----DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256
               + +   +  +       ++  +      +    +  K+K S           +  T
Sbjct: 342 NQVSEGQADMIGALVSSDVREDRLSFSRPYIDNSFVLVTRKDKGSPSYLEQMDGKRLAIT 401

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
           +  P+L       P        N  Q       G  +                       
Sbjct: 402 QGSPMLDWLRRKYPRVVPLEIDNPFQALDMLAVGRTEGAVVSLLSADY------------ 449

Query: 317 EGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
                            F               L++   S + +E++  L   L +    
Sbjct: 450 -----------FLSSGIFEERLQMTATVGEDPALISMATSRNALELSSILDKALASIAPQ 498

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           D  AI       +            +  W+    L    +           +    +  +
Sbjct: 499 DLAAINNRWRAYTP----------SSASWHDYQRLIYQIVIGAGLLLLGLLVWNAWMRRQ 548

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
                  +R +  +   + ++++ T   I + +R+G++   N +  + F    EDI+ K 
Sbjct: 549 IRQREAAERALSDQYEFMRALVDGTPHPIYVRDRDGLLQMCNDSYLRAFSAQREDIIGKS 608

Query: 497 FTVFLEQNTPSV--MNHYLTEILSLDLRQTLEKITLGSTKEEKLL-SLRIIIKKLPFSSC 553
            T  +  N             +++ +    L++      ++  +   +      L     
Sbjct: 609 ATERVLGNAFEAREYAADYQRVMASNTALILDRPLHIGDRQLTIYHWILPFRDSLGEVQG 668

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
                 DIS+ +Q    L  AK+ A+  S  KS FLA +SHEIRTP+ A+IG  E+   +
Sbjct: 669 IIGGWIDISDRRQLIEDLQAAKEQADAASRAKSTFLATMSHEIRTPMNAVIGMLELALKR 728

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
                 +            S N +LD++ D+LDI++IESG++ L+ E  +L + V   + 
Sbjct: 729 ADQGELD---RSAIEVAYSSANDLLDLIGDILDIARIESGRLALNPERANLRQLVESVLR 785

Query: 674 LVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
           +    A +K + +     + I   +L D    KQI  N++SNAI FTP G ++ I+    
Sbjct: 786 VFDGLARQKDLDLVLELDSRINTDVLIDPLRFKQILSNLVSNAIKFTPMG-RVKIALQAV 844

Query: 733 SNE-----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
            N       + + V+D+G+G++  + ++  +PF Q  N+ Q+   G GLGL + +++   
Sbjct: 845 DNPDPQLLHLHITVQDSGIGISVEDQKRLFEPFAQADNTGQMARTGAGLGLVICRSLCMM 904

Query: 788 NMGKFYIFSTPAKGTLIEIIF 808
             G   + S P  GT I +  
Sbjct: 905 MGGNLSLDSEPGNGTRISMNL 925



 Score = 40.4 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 29/231 (12%), Positives = 57/231 (24%), Gaps = 8/231 (3%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCD--VSDILHIDPNNHIGDLLKRQNTWYGKT 147
           D  G L+  ++   +        +IG    +  + +             +   NT     
Sbjct: 581 DRDGLLQMCNDSYLRAFSAQREDIIGKSATERVLGNAFEAREYAADYQRVMASNTALILD 640

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
               I    L +   +  LP      E  G  G  I              +   ++    
Sbjct: 641 RPLHIGDRQLTIYHWI--LPFRDSLGEVQGIIGGWI--DISDRRQLIEDLQAAKEQADAA 696

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
              K    +    +            L +  K +   E      +V  +    LL     
Sbjct: 697 SRAKSTFLATMSHEIRTPMNAVI-GMLELALKRADQGELDRSAIEVAYSSANDLLDLIGD 755

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
            L +     +  L    ++     L  +    F+ L+ +    L    D  
Sbjct: 756 IL-DIARIESGRLALNPERANLRQLVESVLRVFDGLARQKDLDLVLELDSR 805


>gi|184154492|ref|YP_001842832.1| two-component sensor histidine kinase [Lactobacillus fermentum IFO
           3956]
 gi|183225836|dbj|BAG26352.1| two-component sensor histidine kinase [Lactobacillus fermentum IFO
           3956]
          Length = 619

 Score =  316 bits (810), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 88/427 (20%), Positives = 173/427 (40%), Gaps = 47/427 (11%)

Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM-EIEVMQLC 455
             R  T++  R       F    K     E     G            ++  + E  +L 
Sbjct: 212 EMRKQTLRIARG-----DFSGQVKVMGNDELGQLAGAVNNLSVRVEESQESSDAERRRLD 266

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRKPFTVFLEQNTPSVMNHYLT 514
           S+L   SDG+   +R G +   N    +       E +L K     L+      + H + 
Sbjct: 267 SVLSHMSDGVLATDRRGNLTIVNNTALQFLNIADEEQVLGKSILDVLKIRRQFSIRHLVD 326

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS----LTMHDISEWKQEKNK 570
           E     +   L +  +          L      +   S +       +HD++  ++E+ +
Sbjct: 327 EDQDQVILDDLNEDLI----------LSAYFSPIKRESGFVSGLVCVLHDVTSQQKEERE 376

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI-EYANY 629
                         + +F++ VSHE+RTPLT++  + E + +   G + +P     +   
Sbjct: 377 --------------RKEFVSNVSHELRTPLTSVKSYVEALSD---GAINDPELASRFLGV 419

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN-------EK 682
           +      ++ ++NDLL +S+++SG   L+ E V+++E  +  ++   +          +K
Sbjct: 420 VSDETERMIRMINDLLSLSRMDSGTAKLNLEYVNINELFNYILNRFDMIIKNEAADPSQK 479

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           +  I   F      +  D     Q+  NI++NA+ ++P GG I       ++  VIL + 
Sbjct: 480 KYTIVRYFTKKDLWVEIDTDKFTQVVDNIMNNAVKYSPDGGVITARL-LETHNHVILSIS 538

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G+G+   +L      F ++  ++  +  GTGLGL ++K +V+   G+ ++ S   KG+
Sbjct: 539 DQGLGIPRKDLGHIFDRFFRVDKARSRKQGGTGLGLAISKEVVNLLGGQIWVDSVEGKGS 598

Query: 803 LIEIIFP 809
              I  P
Sbjct: 599 TFYISLP 605


>gi|196229659|ref|ZP_03128523.1| PAS/PAC sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
 gi|196225985|gb|EDY20491.1| PAS/PAC sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
          Length = 1055

 Score =  316 bits (810), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 87/668 (13%), Positives = 203/668 (30%), Gaps = 83/668 (12%)

Query: 184 VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV--- 240
           +  +          +   + ++ L     G           F+  S      +   V   
Sbjct: 281 LTDSLTSLIADRNLRESQRAYASLVNNIDGIVWELDVPTFHFTFVSQQAERILGYPVEQW 340

Query: 241 ---SSLTEYYAHKDDVLKTEKYPLLTSEESSLPE-QEDFHTINLNQYTKKQYFGTLQNNS 296
              +   + + H  D      Y L  +EE    +        +            + + +
Sbjct: 341 LNEADFWQNHLHPGDRDWALHYCLRATEERRDHDFYYRMIAADGRVVWLHDLVKVI-SEN 399

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKY 354
               +        + +   +E   L    +D+      V     G     N     +  Y
Sbjct: 400 DRPVKLRGIMVDITKAKSGEEALKLFRTLIDRATDTIEVVDPVTGRFLDVNERACQVHGY 459

Query: 355 KSVDDIE------------IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT 402
              + +                G             +        R D +        + 
Sbjct: 460 SREEYLRLRVPDLEVGIDFETPGRWVEHVDHIRQAGSKALVGAHRRKDGSIFPVEVNANY 519

Query: 403 IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
           I  +R+                        +  +  + +  +  +     +   + E+  
Sbjct: 520 ITLDRD--------------------YVISVVRDVTERKFAEEALRESEQRFRQVAESIE 559

Query: 463 DGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVF--LEQNTPSVMNHYLTEILSL 519
           +   +++  +G  +  + A  K++G   + +   P +    +  +  S       ++ + 
Sbjct: 560 EVFWLVDVTKGRTIYISPAYEKIWGRSCKGLYESPLSWMATIHPDDRSRATEARRKLANS 619

Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAK 575
                 +        +  +  +      +  +            DI+  +Q ++++  ++
Sbjct: 620 GE---YDMEYRIERPDGAVRWIHDRAFPIKDAQGRIYRMVGVAEDITARRQLEDEVRQSQ 676

Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
           K+              ++H+    L+AI   S ++         +    E    I  + +
Sbjct: 677 KM-----EAVGRLAGGIAHDFNNLLSAIQMQSALLLET---APDDGVTREGIRDIMTAAD 728

Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695
               +   LL  S+    +       + L E V  A++ + L    + I++ + FA+ +P
Sbjct: 729 RATHLTRQLLTFSRRNVKQA----RDLDLTEVVG-AMNKLLLRMLGEDIVLESRFASPLP 783

Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIIST--------------THTSNEEVILRV 741
            + AD   V+Q+ +N+  NA    P+GG++I++                 ++   V L V
Sbjct: 784 MVHADPGMVEQVLMNLAINARDAMPTGGRLIVTLDLANVDAEAAAAKPGISAGRFVCLSV 843

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            DTG G+   +L +  +PF          G GTGLGL +   +V+ + G   + S    G
Sbjct: 844 SDTGCGIAAADLSRIFEPFFTTK----EIGRGTGLGLAIVFGIVEQHHGWIDVESALGLG 899

Query: 802 TLIEIIFP 809
           T   +  P
Sbjct: 900 TTFRVFLP 907



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/391 (8%), Positives = 109/391 (27%), Gaps = 30/391 (7%)

Query: 93  GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID-PNNHIGDL--LKRQNTWYGKTTL 149
           G   +++E   +  G    + + +R+ D+   +  + P   +  +  +++  +       
Sbjct: 444 GRFLDVNERACQVHGYSREEYLRLRVPDLEVGIDFETPGRWVEHVDHIRQAGSKALVGAH 503

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
              +G+   V ++   + +   +R++       +V             +  +++F  + E
Sbjct: 504 RRKDGSIFPVEVNANYITL---DRDYV----ISVVRDVTERKFAEEALRESEQRFRQVAE 556

Query: 210 IKKGHSSVEKEK-YDIFSQQSPPPHLRMKNKVSSLTEYY-----AHKDDVLKTEKYPLLT 263
             +    +                 +  ++               H DD  +  +     
Sbjct: 557 SIEEVFWLVDVTKGRTIYISPAYEKIWGRSCKGLYESPLSWMATIHPDDRSRATEARRKL 616

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
           +       +      +            +++     +  +      +     ++    + 
Sbjct: 617 ANSGEYDMEYRIERPDGAVRWIHDRAFPIKDAQGRIYRMVGVAEDITARRQLEDEVRQSQ 676

Query: 324 --ETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
             E V +       +   NL  A      L    + DD     G+  ++ A   + +   
Sbjct: 677 KMEAVGRLAGGIA-HDFNNLLSAIQMQSALLLETAPDDGVTREGIRDIMTAADRATHLTR 735

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
           + +   R +            +    +  L M        ++F   +P    +P  V+  
Sbjct: 736 QLLTFSRRNVKQARDLDLTEVVGAMNKLLLRMLGEDIVLESRFASPLPMVHADPGMVEQV 795

Query: 442 INKRKMEIEVMQLCSILEATSDG---IAIIN 469
           +    +           +A   G   I  ++
Sbjct: 796 LMNLAINAR--------DAMPTGGRLIVTLD 818


>gi|254563786|ref|YP_003070881.1| PAS sensor hybrid histidine kinase [Methylobacterium extorquens
           DM4]
 gi|254271064|emb|CAX27071.1| putative PAS sensor hybrid histidine kinase [Methylobacterium
           extorquens DM4]
          Length = 703

 Score =  316 bits (810), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 95/413 (23%), Positives = 180/413 (43%), Gaps = 20/413 (4%)

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
            +     +  A        + +  E +       E +  R+   ++     +   ++EAT
Sbjct: 7   AVSVMGLSIAAAMLALILVSLRRREPVVPESDMTEALQDRL--WQIAESEERYRVLVEAT 64

Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
           ++ +   + +G I   +   + L G    +++           +P V+    +E  +  +
Sbjct: 65  TEAVVQRDGQGRITFASAGFAALLGMKPLELIGSTL-------SPQVIERGASEQRADGV 117

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE 581
           R   E++            + + +        +     D++   +    L  AK  AE  
Sbjct: 118 RVVEERLVPVDGLPRWFSFIEMPVSGSVDGPNWLRAGQDVTARVEAARVLDEAKSRAEAA 177

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
           +  KS FLA VSHE+RTPL  I+G ++++ + R     +P    Y      SG  +L +V
Sbjct: 178 NVAKSRFLATVSHELRTPLNGILGMADLLLDTRL----DPEQRTYVEAFRTSGKALLGLV 233

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-AD 700
           + +LD S+IE+G+++L  EP  +   V   + L+   A +K + I    A+++  +   D
Sbjct: 234 DGILDFSRIEAGRLDLAAEPFDVAALVEGVVELLAPRAQDKGLEIALDIADDLAALRVGD 293

Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILRVRDTGVGMTNYELEKAM 757
              V+QI +N+  NAI FT +GG + +S   +   +   ++L V DTG G+    +    
Sbjct: 294 ADRVRQILVNLAGNAIKFTQAGG-VGVSLARSGEGQGEGLVLTVEDTGPGIPEERIPILF 352

Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           + F Q  +S     EGTGLGL + + +V+   G     ST  +G+   ++ PL
Sbjct: 353 EEFEQGDDSAS--HEGTGLGLAITRRLVERMNGTIEARSTVGRGSTFRVVLPL 403



 Score = 40.8 bits (94), Expect = 0.86,   Method: Composition-based stats.
 Identities = 21/234 (8%), Positives = 49/234 (20%), Gaps = 17/234 (7%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D  G +   S      +G    ++IG  L        I+                 +  L
Sbjct: 72  DGQGRITFASAGFAALLGMKPLELIGSTLS----PQVIERGASEQRA---DGVRVVEERL 124

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
            P++G  L        +P+   +    G              +   +      +    + 
Sbjct: 125 VPVDG--LPRWFSFIEMPV---SGSVDGPNWLRAGQDVTARVEAARVLDEAKSRAEAANV 179

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
            K    +    +       +P   +     +   T     +   ++  +           
Sbjct: 180 AKSRFLATVSHELR-----TPLNGILGMADLLLDTRLDPEQRTYVEAFRTSGKALLGLVD 234

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
              +             + F                     L    D  ++L  
Sbjct: 235 GILDFSRIEAGRLDLAAEPFDVAALVEGVVELLAPRAQDKGLEIALDIADDLAA 288


>gi|151220230|ref|YP_001331053.1| sensor kinase protein [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|212288553|sp|A6QD58|WALK_STAAE RecName: Full=Sensor protein kinase walK
 gi|150373030|dbj|BAF66290.1| sensor kinase protein [Staphylococcus aureus subsp. aureus str.
           Newman]
          Length = 608

 Score =  316 bits (810), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 81/388 (20%), Positives = 173/388 (44%), Gaps = 29/388 (7%)

Query: 426 ENMPQNGIEPEDVDTRINKRKM--EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           + + +  +   ++  R+ + +   E E  +L S++   SDGI   +R G I   N    K
Sbjct: 235 DEIGELALAFNNLSKRVQEAQANTESEKRRLDSVITHMSDGIIATDRRGRIRIVNDMALK 294

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +FG   EDI+       L       +        S  L    E+  +        ++   
Sbjct: 295 MFGMAKEDIIGYYMLSVLSLEDEFKLEEIQENNDSFLLDLNEEEGLIAR------VNFST 348

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
           I+++  F + Y   +HD++E +Q + +              + +F+A VSHE+RTPLT++
Sbjct: 349 IVQETGFVTGYIAVLHDVTEQQQVERE--------------RREFVANVSHELRTPLTSM 394

Query: 604 IGFSEVIKNQRFGPLGNPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
             + E ++    G   +     ++ +        ++ +VNDLL +SK+++    ++ E +
Sbjct: 395 NSYIEALEE---GAWKDEELAPQFLSVTREETERMIRLVNDLLQLSKMDNESDQINKEII 451

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
             +  +++ I+  ++ A  K                 D   + Q+  N+++NA+ ++   
Sbjct: 452 DFNMFINKIINRHEMSA--KDTTFIRDIPKKTIFTEFDPDKMTQVFDNVITNAMKYSRGD 509

Query: 723 GQIIISTTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
            ++            + +R++D G+G+   +++K    F ++  ++  +  GTGLGL ++
Sbjct: 510 KRVEFHVKQNPLYNRMTIRIKDNGIGIPINKVDKIFDRFYRVDKARTRKMGGTGLGLAIS 569

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           K +V+A+ G+ +  S   +GT I I  P
Sbjct: 570 KEIVEAHNGRIWANSVEGQGTSIFITLP 597


>gi|16803986|ref|NP_465471.1| hypothetical protein lmo1947 [Listeria monocytogenes EGD-e]
 gi|224501253|ref|ZP_03669560.1| hypothetical protein LmonFR_01810 [Listeria monocytogenes FSL
           R2-561]
 gi|16411400|emb|CAD00025.1| resE [Listeria monocytogenes EGD-e]
          Length = 596

 Score =  316 bits (810), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 80/378 (21%), Positives = 156/378 (41%), Gaps = 42/378 (11%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
             +  E  QL +IL   +DG+   + +  I+ +N    +                F    
Sbjct: 249 SALRQEKEQLSNILVGMADGVIKFSVDKTIILSNPPAEEFLH-----------NWFFSPE 297

Query: 505 TPSVMN------HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM 558
               +         L + L     Q  E        +   +++  ++            +
Sbjct: 298 NTEKVLIPVALNELLNDTLEKKESQVGEITF----ADHTYVAILTLLYTGEHVRSIVAVI 353

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            D++E KQ +                KSDF+  VSHE+RTP++ + G+SE I +      
Sbjct: 354 RDMTEEKQLE--------------KMKSDFVNNVSHELRTPISMLQGYSEAIIDGV--AQ 397

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
            +    E+A  I      +  +VND+LD++++E+G   +  + + L   + + IS   + 
Sbjct: 398 SDEEVREFAQIIYDESLRIGRLVNDMLDLARMEAGFNQMDNQKLPLAPLLRKVISNFDVL 457

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS---GGQIIISTTHT-SN 734
           A E  + +             D   ++Q+ +N++ NAI  T      G++I+  T   + 
Sbjct: 458 AKENFVELGLELETPDLEYSYDPDRMEQVLINLIMNAIRHTGKEGYDGKVILKQTIDVAR 517

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGEGTGLGLPLAKAMVDANMGKFY 793
             +++ V D G G+   ++    + F ++  +++  +  GTG+GL + K +V+A+ GK  
Sbjct: 518 SNLVITVSDNGSGIAEEDIPYLFERFYKVDKARKRGKAVGTGIGLAIVKNIVEAHNGKIS 577

Query: 794 IFSTPAKGTLIEIIFPLY 811
           + S   KG+   I  PLY
Sbjct: 578 VESELGKGSDFIITLPLY 595


>gi|254242797|ref|ZP_04936119.1| hypothetical protein PA2G_03563 [Pseudomonas aeruginosa 2192]
 gi|126196175|gb|EAZ60238.1| hypothetical protein PA2G_03563 [Pseudomonas aeruginosa 2192]
          Length = 1417

 Score =  316 bits (810), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 112/662 (16%), Positives = 223/662 (33%), Gaps = 48/662 (7%)

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS--LTE 245
           R+     A  +                  ++    D           R +  V    +  
Sbjct: 334 RLRRRREAATQARLAAIVGNSADGIIGVGLDGVISDWNRGAEALFGYREEQAVGRRVVDL 393

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
                 +  + +    +  +E  +         + +          +             
Sbjct: 394 LVPPSKENEELDILARIARKEQVVSFDTVRRHQDGHLLDVAVTVSPILGPDGGVVGASKT 453

Query: 306 RNHPSLSAYFDEGENLTPETVDK-------------------CPIP-----FFVYSHGNL 341
               S     +         ++                               +   G +
Sbjct: 454 VRDISAKKAAEARIRELNTGLEHQIAERTAELRRLNVLLGSVLQAASEVSIITLDRDGII 513

Query: 342 FYANPSFLLLTKYKSVDDIEIAGGL----STLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397
              N     +  Y++ + +  A          L A           V++ R+++    A 
Sbjct: 514 SGFNLGAERMLGYRADEVVGKASPTLLHSERELLARGQELGEEGFRVLVARAEQEG--AE 571

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
            R  T      + L++T       ++        GI  +  + R  +R+M     QL   
Sbjct: 572 TREWTYLRKDGSPLSVTLSVTVLRDEAGAINGYLGIAVDVTEWRNAEREMAAARDQLQMA 631

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFG----YPVEDILRKPFTVFLEQNTPSVMNHYL 513
            +    GI   N     L  N  + +L+G         ++ + +   L           L
Sbjct: 632 ADVARLGIWRWNLADDSLQWNERMCELYGQPLALRDGGLVYEHWRSRLHPEDLERTEASL 691

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKNKL 571
              +       +    +      + +     +++    +    +    DI+  +Q + +L
Sbjct: 692 RAAVEGRGNYDVIFRVVLPDGGIRFIQAGAQVERDADGNPLQVTGINIDITSDQQLQARL 751

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
             AK+ A+  S+ KS FLA +SHEIRTP+ A++G  ++ +        N R  +Y +   
Sbjct: 752 REAKEQADAASAAKSSFLANMSHEIRTPMNAVLGMLQLARQTDL----NERQRDYLDKAS 807

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
            +   +L ++ND+LD SKIE+GK+ L   P  L+  + +   ++     +K + +     
Sbjct: 808 SAATSLLGLLNDILDYSKIEAGKLVLEMLPFELEPLMQDLAVVLSGNQGDKDVEVIFDID 867

Query: 692 NNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH--TSNEEVILRV--RDTGV 746
             +P  ++ D   ++QI +N+  NA+ FT  G  +++S          V LRV   DTG+
Sbjct: 868 PELPSAVVGDRLRLQQILINLAGNALKFTARG-HVLVSLRRLAHDAHLVRLRVLVADTGI 926

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G++  + ++  + F Q   S   R  GTGLGL + K +VD   G+  + S P  G+    
Sbjct: 927 GISAEQQQRIFEGFTQAEASTSRRFGGTGLGLFICKRLVDLMGGELRVESAPGSGSRFWF 986

Query: 807 IF 808
             
Sbjct: 987 DL 988



 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 69/523 (13%), Positives = 141/523 (26%), Gaps = 61/523 (11%)

Query: 97  EISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTN 156
            ++E+  +       +++   +    ++         G LL        +          
Sbjct: 34  LVNEQQARMALEREAELLAEAVTRRVELYQYGLRGVRGALLTAGEAHIDRELFRR----- 88

Query: 157 LYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSS 216
                          +REF G RGFG +   RV     A   R  +         +  + 
Sbjct: 89  --------YSLTRDIDREFPGARGFGFIR--RVAAADEAGFLRQARADGQPEFRIQQLTP 138

Query: 217 VEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFH 276
            + E+Y I   +    + +      +                   LT   + +       
Sbjct: 139 HDGERYVIQYIEPVARNGQALGLDIASEANRREAARAALETGQVRLTGPITLVQASGLRQ 198

Query: 277 TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY 336
              L                +                 +     LT E +   PI     
Sbjct: 199 QSFLILMPIY----------RSGITPPPGPQRELEGFGWSYAPLLTGEVLAGLPI----- 243

Query: 337 SHGNLFYANPS-FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIA 395
                   N +  L L+                   A +L  +   + +          A
Sbjct: 244 -------DNAAIHLELSDVTGDGAAVPFFVNGAAAPAQRLFGHMLRREIYGRHWQMAFSA 296

Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
               +  +       L +             N    G        R+ +R+      +L 
Sbjct: 297 LPLFVQRLHQPSPRILFLAGSLVSLLLAALVNASALG--------RLRRRREAATQARLA 348

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS-VMNHYLT 514
           +I+  ++DGI  +  +G+I   NR    LFGY  E  + +     L   +        L 
Sbjct: 349 AIVGNSADGIIGVGLDGVISDWNRGAEALFGYREEQAVGRRVVDLLVPPSKENEELDILA 408

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNK 570
            I      Q +   T+   ++  LL + + +  +       +    T+ DIS  K  + +
Sbjct: 409 RIA--RKEQVVSFDTVRRHQDGHLLDVAVTVSPILGPDGGVVGASKTVRDISAKKAAEAR 466

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
           +       E + + ++        E+R  L  ++G      ++
Sbjct: 467 IRELNTGLEHQIAERTA-------ELRR-LNVLLGSVLQAASE 501



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/404 (8%), Positives = 93/404 (23%), Gaps = 46/404 (11%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL--HIDPNNHIGDLLKRQNTWYGK 146
           +   G + + +       G    + +G R+ D+        +  + +  + +++      
Sbjct: 361 VGLDGVISDWNRGAEALFGYREEQAVGRRVVDLLVPPSKENEELDILARIARKEQVVSFD 420

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR------- 199
           T     +G  L V + ++  PI   +    G      V          A  +        
Sbjct: 421 TVRRHQDGHLLDVAVTVS--PILGPDGGVVGASK--TVRDISAKKAAEARIRELNTGLEH 476

Query: 200 ---------------LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244
                          L        E+       +                R    V   +
Sbjct: 477 QIAERTAELRRLNVLLGSVLQAASEVSIITLDRDGIISGFNLGAERMLGYRADEVVGKAS 536

Query: 245 EYYAHKDDVLKTEKYPL----------LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294
               H +  L      L             +E +   +  +   + +  +       L++
Sbjct: 537 PTLLHSERELLARGQELGEEGFRVLVARAEQEGAETREWTYLRKDGSPLSVTLSVTVLRD 596

Query: 295 NSKESFEYLSHRNHPSLSAYFDEG----ENLTPETVDKCPIPFFVYS-HGNLFYANPSFL 349
            +     YL      +     +       +      D   +  + ++   +    N    
Sbjct: 597 EAGAINGYLGIAVDVTEWRNAEREMAAARDQLQMAADVARLGIWRWNLADDSLQWNERMC 656

Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
            L        +   G +     +    ++       L  +             +  +   
Sbjct: 657 ELYGQPL--ALRDGGLVYEHWRSRLHPEDLERTEASLRAAVEGRGNYDVIFRVVLPDGG- 713

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
              +      + +     +   GI  +    +  + ++     Q
Sbjct: 714 IRFIQAGAQVERDADGNPLQVTGINIDITSDQQLQARLREAKEQ 757


>gi|325685238|gb|EGD27356.1| sensor histidine kinase VicK [Lactobacillus delbrueckii subsp.
           lactis DSM 20072]
          Length = 631

 Score =  316 bits (810), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 87/397 (21%), Positives = 172/397 (43%), Gaps = 36/397 (9%)

Query: 426 ENMPQNGIEPEDVDTRINK--RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           + + Q G     +  +I +   + E E  +L S+L   +DG+   +R G +   N+    
Sbjct: 245 DELGQLGAAFNTLSVKIERSNEQSESERRRLDSVLSHMTDGVIATDRHGNVSIMNQMAQD 304

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
                 ED ++KP +  L           ++       +  ++      T +E +L    
Sbjct: 305 FLDVKAEDAIKKPISQVLGLGEDYTSQDLISN------QSDMQVTVNAGTDDEMILHASF 358

Query: 544 IIKK--LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
            + K    F S     +HD++E  + +++              +  F++ VSHE+RTPLT
Sbjct: 359 TLIKRVTGFVSGAVCVLHDVTEQIKNEDE--------------QRQFVSNVSHELRTPLT 404

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           ++  + E +    +         ++ +   +    ++ +VNDLL +S+++ G   L  E 
Sbjct: 405 SVRAYIEALNEGAW--KDPEIAPQFLDVTQKETERMIRMVNDLLVLSRMDRGATKLEPEW 462

Query: 662 VSLDEAVSEAISLV---------QLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712
           V+  + VS  ++           +  ++ K  +I+    N    +  D   + ++  NI+
Sbjct: 463 VNFTDFVSHLLNRFDMIVEHDQGEAQSDTKEYVIKRDLGNQALWVEIDTDQMMRVIDNIM 522

Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           +NAI ++P GG I +  T   N +++L + D G+G+   +L K    F +   ++     
Sbjct: 523 NNAIKYSPDGGTITVRLTQNQN-QILLSISDQGLGIPRKDLGKIFDRFYRADKARSRAQG 581

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GTGLGL +AK +V A+ G+ +  S    G+   I  P
Sbjct: 582 GTGLGLAIAKEIVTAHGGRIWADSREGHGSTFYIALP 618


>gi|315283630|ref|ZP_07871770.1| two-component sensor histidine kinase [Listeria marthii FSL S4-120]
 gi|313612735|gb|EFR86737.1| two-component sensor histidine kinase [Listeria marthii FSL S4-120]
          Length = 591

 Score =  316 bits (810), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 81/367 (22%), Positives = 171/367 (46%), Gaps = 29/367 (7%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           +++    +L +I++    G+ +IN +  ++ TNR + ++ G    +I  KPF   ++   
Sbjct: 246 EIKQNEQRLNAIVQNLVSGVMLINIDKQVIMTNRTMYQILG--ETEITGKPFYEVIKSFA 303

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISE 563
            S +        + + +   +K  +     E +L   +              L +HDI++
Sbjct: 304 LSQLIEA-----TFETKTIQQKEIILYFPREMILDASVSPILAENGEITGIILLLHDITQ 358

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            +  +N               +S+F+  VSHE++TP+TA+ GF+E + +   G + +   
Sbjct: 359 IRHLENV--------------RSEFVTNVSHELKTPVTALKGFAETLLD---GAMYDEML 401

Query: 624 -IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             ++   I    + +  ++ D+L +S+IE   +  + E V +D+ + ++   +   A EK
Sbjct: 402 LKKFLTIIKEESDRLHRLIMDILALSRIEQNPVPENIEIVDMDDVIEQSARTIFEMATEK 461

Query: 683 RILIRT-SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
            I +      +    I  D   ++QI +N+LSNAI++TP  G++ +        EVI+ V
Sbjct: 462 NIQVTIPEKTSTPVTIETDRDKLQQILINLLSNAINYTPVDGKVEVKL-IDHEAEVIIEV 520

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            D G+G+   ++++  + F ++  ++     GTGLGL + K +V+   G+  + S    G
Sbjct: 521 TDNGIGIPAKDIDRVFERFYRVDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVG 580

Query: 802 TLIEIIF 808
           +   +  
Sbjct: 581 STFRVTL 587


>gi|71275082|ref|ZP_00651369.1| PAS [Xylella fastidiosa Dixon]
 gi|71163891|gb|EAO13606.1| PAS [Xylella fastidiosa Dixon]
          Length = 558

 Score =  316 bits (810), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 98/521 (18%), Positives = 188/521 (36%), Gaps = 44/521 (8%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYS---------HGNLFYANPSFLLLTKYKSVDD 359
           P +    D   ++  E +      F +            G     N SF    +  SV  
Sbjct: 33  PLVLQSLDIPSDVYREMLCTLEAGFCIVQIVLDDGQPVDGIFRLTNASFGRHLRLDSV-- 90

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
                   ++           IK           +   AR    +W         +    
Sbjct: 91  -----VGESVCGIMPDDGPEYIKRYGGVALSGQRVHFEARALR-RW---------YSVEV 135

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
                PE      +  +  + +  +R++    ++   + +     + + + +G +   N 
Sbjct: 136 MRVGAPEGRLLGVLFVDITEHKRMERRLAESEVRFNILADGLPMPVWVFDAQGGMRFVNT 195

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
           A  + FG  +       +++ L      +    L+  L    +  L  +      + +  
Sbjct: 196 AYGEFFGVDLSSGTVPEWSMVLHPEDVLIFEFKLSAALKT--QSALRALVRARRYDGQWR 253

Query: 540 SLRIIIKKLPFSSCYSLTMH----DISEWKQEKNKLSH-------AKKIAEKESSHKSDF 588
            + +          + + +     D++E  + +            A+  AE  +  K +F
Sbjct: 254 WIEMSATPRYSPDGHFIGLTGNSPDVTERLEIELAREQLLKSERAARNEAENMARLKDEF 313

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
           L+ +SHE+RTPLT I+G+SE++  +      +P Y    + I  S  +   +++D+LD+S
Sbjct: 314 LSTLSHELRTPLTTILGWSELLLQRI--EEQHPCYKG-LSVIASSAKVQKRLISDMLDLS 370

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIA 708
            +  GKM L  E + L E + E I L +     K   +          +L D   ++QI 
Sbjct: 371 SMLLGKMQLEMEVLDLVEQIREVIGLYEQVVESKGQRLLLRAPEMPCLVLGDATRLRQIF 430

Query: 709 LNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
            N+LSNAI FTP+ G I +       +   + V D+G G+    L      F Q   +  
Sbjct: 431 ENLLSNAIKFTPTDGCIDVEID-ADGDSFRVSVTDSGDGIAAEFLPHLFSRFRQADGTTT 489

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIF 808
               G GLGL + +++V+ + G     S    KG +  +  
Sbjct: 490 RCHGGLGLGLAIVQSLVEMHGGYVGATSPGLGKGAMFTVSL 530



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 49/160 (30%), Gaps = 9/160 (5%)

Query: 68  LDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI 127
            +SE  F        +   W  DA G ++ ++    +  G             V     +
Sbjct: 164 AESEVRFNILADGLPMP-VWVFDAQGGMRFVNTAYGEFFGVDLSSGTVPEWSMVLHPEDV 222

Query: 128 DP-NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHV 186
                 +   LK Q+           +G   +  I+++A P YS +  F G  G      
Sbjct: 223 LIFEFKLSAALKTQSALRALVRARRYDG--QWRWIEMSATPRYSPDGHFIGLTG-----N 275

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFS 226
           +    +   +    ++        +    ++ + K +  S
Sbjct: 276 SPDVTERLEIELAREQLLKSERAARNEAENMARLKDEFLS 315



 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/207 (11%), Positives = 49/207 (23%), Gaps = 14/207 (6%)

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL--SHRNHPSLSAYFDEGENLT 322
              +L  Q         +         +          L      H  +     E E   
Sbjct: 111 GGVALSGQRVHFEARALRRWYSVEVMRVGAPEGRLLGVLFVDITEHKRMERRLAESEVRF 170

Query: 323 PETVDKCPIPFFVYSH-GNLFYANPSFLLLTK----------YKSVDDIEIAGGLSTLLD 371
               D  P+P +V+   G + + N ++               +  V   E        L 
Sbjct: 171 NILADGLPMPVWVFDAQGGMRFVNTAYGEFFGVDLSSGTVPEWSMVLHPEDVLIFEFKLS 230

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT-FIPFEKANQFPENMPQ 430
           A   + +     V   R D                  + + +T   P        E   +
Sbjct: 231 AALKTQSALRALVRARRYDGQWRWIEMSATPRYSPDGHFIGLTGNSPDVTERLEIELARE 290

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSI 457
             ++ E       +    ++   L ++
Sbjct: 291 QLLKSERAARNEAENMARLKDEFLSTL 317


>gi|313122883|ref|YP_004033142.1| sensor protein [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312279446|gb|ADQ60165.1| Sensor protein [Lactobacillus delbrueckii subsp. bulgaricus ND02]
          Length = 635

 Score =  316 bits (810), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 86/397 (21%), Positives = 172/397 (43%), Gaps = 36/397 (9%)

Query: 426 ENMPQNGIEPEDVDTRINK--RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           + + Q G     +  +I +   + E E  +L S+L   +DG+   +R G +   N+    
Sbjct: 249 DELGQLGAAFNTLSVKIERSNEQSESERRRLDSVLSHMTDGVIATDRHGNVSIMNQMAQD 308

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
                 ED ++KP +  L           ++       +  ++      T +E +L    
Sbjct: 309 FLDVKAEDAIKKPISQVLGLGEDYTSQDLISN------QSDMQVTVNAGTDDEMILHASF 362

Query: 544 IIKK--LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
            + K    F S     +HD++E  + +++              +  F++ VSHE+RTPLT
Sbjct: 363 TLIKRVTGFVSGAVCVLHDVTEQIKNEDE--------------QRQFVSNVSHELRTPLT 408

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           ++  + E +    +         ++ +   +    ++ +VNDLL +S+++ G   L  E 
Sbjct: 409 SVRAYIEALNEGAW--KDPEIAPQFLDVTQKETERMIRMVNDLLVLSRMDRGATKLEPEW 466

Query: 662 VSLDEAVSEAISLV---------QLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712
           V+  + V+  ++           +  ++ K  +I+    N    +  D   + ++  NI+
Sbjct: 467 VNFTDFVAHLLNRFDMIVEHDQGEAQSDTKEYVIKRDLGNQALWVEIDTDQMMRVIDNIM 526

Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           +NAI ++P GG I +  T   N +++L + D G+G+   +L K    F +   ++     
Sbjct: 527 NNAIKYSPDGGTITVRLTQNQN-QILLSISDQGLGIPRKDLGKIFDRFYRADKARSRAQG 585

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GTGLGL +AK +V A+ G+ +  S    G+   I  P
Sbjct: 586 GTGLGLAIAKEIVTAHGGRIWADSREGHGSTFYIALP 622


>gi|182412601|ref|YP_001817667.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
 gi|177839815|gb|ACB74067.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
          Length = 754

 Score =  316 bits (810), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 87/388 (22%), Positives = 160/388 (41%), Gaps = 15/388 (3%)

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
             + +   +     +L ++ +    GIA  +  G  L  N    ++ G P E +L+    
Sbjct: 227 QVQESHSALRESEERLSAVFQQAGAGIAQTDVSGRFLMVNDRYCEIVGRPRESLLQLRMQ 286

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS--- 555
             +     S                 +   T     +   + +R  +  +  ++      
Sbjct: 287 DIIHPADLSHHQFLSEHSARDGSSFVV--ETRYDRPQGGFVWVRNSVAFIRDAAGTIESA 344

Query: 556 -LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+  K+ + +L  A+  A   S  K DFLA +SHE+RTPL  ++  +       
Sbjct: 345 IAVTEDITSSKRTEKELERARDDALAASRAKDDFLATLSHELRTPLNPVLLLASEAAED- 403

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
             P   P        I  +  L   +++DLLD+++I  GK+ L  +P  +   + +A++ 
Sbjct: 404 --PTLPPAVRSDFATIRNNVELEARLIDDLLDLTRITRGKLLLDLKPHDMHAILQDALAT 461

Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
           V+     K+I+    F      +L+D   ++Q+  N+L NA+ FTP  G I + T     
Sbjct: 462 VRAELERKQIVTTLKFDAGRAVVLSDAVRLQQVFWNVLKNAVKFTPEQGGITVHTHLAVG 521

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIP---NSQQIRGEGTGLGLPLAKAMVDANMGK 791
           + +++ + DTG+G+   E+E+    F Q      +   R  G GLGL +++ +V+ + G 
Sbjct: 522 DSLVVEITDTGIGLEPAEIERIFDAFSQGDHAGTAGSHRFGGVGLGLAISRMLVELHRGS 581

Query: 792 FYIFS-TPAKGTLIEIIFPL--YDTSHP 816
               S     G    I  PL   D + P
Sbjct: 582 IRAESPGRGHGATFRIELPLLRRDVAAP 609



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/316 (11%), Positives = 83/316 (26%), Gaps = 10/316 (3%)

Query: 20  GNTQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPI 79
            NT  +  ++ D      K   +     +   ++   Q QES S     +   + VF   
Sbjct: 190 ANTARIVSERKDYSVRAVKLSNDELGGFTETFNSMLHQVQESHSALRESEERLSAVFQQA 249

Query: 80  PRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR 139
              +      D  G    +++   + +G     ++ +R+ D+     +  +  + +   R
Sbjct: 250 GAGIA---QTDVSGRFLMVNDRYCEIVGRPRESLLQLRMQDIIHPADLSHHQFLSEHSAR 306

Query: 140 -QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
             +++  +T     +G   +V +  +   I              +              +
Sbjct: 307 DGSSFVVETRYDRPQGG--FVWVRNSVAFIRDAAGTIE--SAIAVTEDITSSKRTEKELE 362

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
           R           K    +    +    +  +P   L  +             D       
Sbjct: 363 RARDDALAASRAKDDFLATLSHELR--TPLNPVLLLASEAAEDPTLPPAVRSDFATIRNN 420

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
             L       L +        L    K      +  ++  +      R     +  FD G
Sbjct: 421 VELEARLIDDLLDLTRITRGKLLLDLKPHDMHAILQDALATVRAELERKQIVTTLKFDAG 480

Query: 319 ENLTPETVDKCPIPFF 334
             +      +    F+
Sbjct: 481 RAVVLSDAVRLQQVFW 496



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/336 (8%), Positives = 79/336 (23%), Gaps = 28/336 (8%)

Query: 162 DLAALPIYSRNREF-------SGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214
           ++ A  +Y ++ +         G  G          +         +      + +   +
Sbjct: 82  EIEAAALYDKDGQLYVSYPLSLGPTGVPATPGVDGIDFGLRQITLFEPVIEGQNRVGTLY 141

Query: 215 SSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQED 274
              +               L +      +    A     L ++    L +    + E++D
Sbjct: 142 LRGDLADMYRRLGVYGLVLLSVLGCSGLVALSLAAYFQRLISQPILNLANTARIVSERKD 201

Query: 275 FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF 334
           +     +    K     L   ++     L         +   E E        +      
Sbjct: 202 Y-----SVRAVKLSNDELGGFTETFNSMLHQVQE--SHSALRESEERLSAVFQQAGAGIA 254

Query: 335 VYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393
                G     N  +  +   +  + +        +  A         +       D + 
Sbjct: 255 QTDVSGRFLMVNDRYCEIVG-RPRESLLQLRMQDIIHPADLSHHQFLSE---HSARDGSS 310

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
                R       +   + +        +          +  +   ++  ++++E     
Sbjct: 311 FVVETR---YDRPQGGFVWVRNSVAFIRDAAGTIESAIAVTEDITSSKRTEKELERARDD 367

Query: 454 LCSILEATSDGIAIINREGI------ILSTNRAVSK 483
             +   A  D +A ++ E        +L  + A   
Sbjct: 368 ALAASRAKDDFLATLSHELRTPLNPVLLLASEAAED 403


>gi|160935996|ref|ZP_02083369.1| hypothetical protein CLOBOL_00892 [Clostridium bolteae ATCC BAA-613]
 gi|158440806|gb|EDP18530.1| hypothetical protein CLOBOL_00892 [Clostridium bolteae ATCC BAA-613]
          Length = 1620

 Score =  316 bits (810), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 115/720 (15%), Positives = 250/720 (34%), Gaps = 42/720 (5%)

Query: 112  KMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSR 171
              +G     V  I  ID        +K+     G      +      + + +   P Y +
Sbjct: 773  SDLGRP---VYHINFIDSYESFNSDIKKVA-ETGTIIEREVTDARNSIWL-VRIRPYYEK 827

Query: 172  NREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231
              +  G     +V +  +     A    L +    +           +   D  +     
Sbjct: 828  PEQVGGL----LVTMFDITRRLEAAKFELKRLTDSVPGGVVRMHYDGELIIDYANDSFYA 883

Query: 232  PHLRMKNKVS-----SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKK 286
                    V       L++    +D     ++     +    L  +       L+     
Sbjct: 884  MTGCSPEDVRYRFHNRLSKMILSEDWTQMEQQIESAAAGNGILKYEYRGGRDALSARWYS 943

Query: 287  QYFG--TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF--FVYSHGNLF 342
                   +   ++     +                +               + Y    + 
Sbjct: 944  IQATVFQVNGLTELQGIIMDISKLKDYEQRLQRERDYYNTLYQNMLCGIAQYAYDEDAMD 1003

Query: 343  YA--NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400
            +   NP  L +  Y S+++ +  GG + L    K      +  +   + +  C++     
Sbjct: 1004 FIGINPESLRILGYSSLEEFKGQGGPTMLDITYKEDRERIVGMLQTLKKEGDCVSFD--- 1060

Query: 401  HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
            H I  +      +T       +   + +       +  + +    +++ E  +   + E 
Sbjct: 1061 HRIVRSDGEIRWVTGASKLITSPEGK-LLIQSTFIDTTEEKRTLEQLKEERDRYDLLYET 1119

Query: 461  TSD----GIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
            + +    G+   + +   I++ N+   +L G     +  + F+   E          + E
Sbjct: 1120 SYNMAVCGVIQADVKHNKIIAVNKEALQLLGTDAAGLETQLFSR--EAEKGVPNLSSIGE 1177

Query: 516  ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT---MHDISEWKQEKNKLS 572
            ++        ++ +     +++ +S+   +  +       +      D +E  +   +  
Sbjct: 1178 MMQAAAENEHKRFSHILNFKDRYMSIEGAVDYIMEDKSVRVVQFTFLDNTER-ELLRQAE 1236

Query: 573  HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
               +IA K S  KS FL+++SHEIRTPL  I+G  +             + ++  N + R
Sbjct: 1237 TKLEIATKSSKAKSYFLSKMSHEIRTPLNGIVGMIDSAM---LYRHDKEKLLDSLNKLKR 1293

Query: 633  SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
            S   +  +V+++LD+SKIESGKM+++  PV+L   +S+ I      A E+ I +  +   
Sbjct: 1294 SSLHLQQLVSEVLDLSKIESGKMDVNMGPVNLQLLLSDVIEEFGTMAKERGIGLTQTGKL 1353

Query: 693  NIPRILADLRSVKQIALNILSNAIHFTPSGGQIII---STTHTSNEEV-ILRVRDTGVGM 748
            +   +  D   + +I  N++ NA+ FT S G +++    T     E +   +VRD G G+
Sbjct: 1354 HHKYVNTDKVKLHEILANLIGNALKFTDSSGVVLLNIEETVIAERESLYTFQVRDNGKGI 1413

Query: 749  TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            +  + E+  + F Q  +       G+GLGL + K++V    G   + S    G+      
Sbjct: 1414 SREDQERIFEAFDQGSHDHLYGNSGSGLGLTICKSLVAMLGGSLKVDSIENAGSEFSFTL 1473



 Score = 40.4 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 33/382 (8%), Positives = 90/382 (23%), Gaps = 33/382 (8%)

Query: 90   DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
            D    +   ++      G     +       +S ++  +    +   ++      G    
Sbjct: 869  DGELIIDYANDSFYAMTGCSPEDVRYRFHNRLSKMILSEDWTQMEQQIESAAAGNGILKY 928

Query: 150  WPIEGTNLYVPIDLAAL--PIYSRNREFSGFRGF-GIVHVNRVDNDPRALGKRLDKKFSH 206
                G +      L+A    I +   + +G     GI+       D     +R    ++ 
Sbjct: 929  EYRGGRDA-----LSARWYSIQATVFQVNGLTELQGIIMDISKLKDYEQRLQRERDYYNT 983

Query: 207  LHEIKK---GHSSVEKEKYDIFSQQSPPPHLRMKNKV--------SSLTEYYAHKDDVLK 255
            L++         + +++  D          +   + +         ++ +    +D    
Sbjct: 984  LYQNMLCGIAQYAYDEDAMDFIGINPESLRILGYSSLEEFKGQGGPTMLDITYKEDRERI 1043

Query: 256  TEKYPLLTSEESSLPEQEDFHTINLNQYT---KKQYFGTLQNNSKESFEYLSHRNHPSLS 312
                  L  E   +         +          +   + +        ++         
Sbjct: 1044 VGMLQTLKKEGDCVSFDHRIVRSDGEIRWVTGASKLITSPEGKLLIQSTFIDTTEEKRTL 1103

Query: 313  AYFDEGENLTPETVDK----CPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
                E  +      +                H  +   N   L L    +          
Sbjct: 1104 EQLKEERDRYDLLYETSYNMAVCGVIQADVKHNKIIAVNKEALQLLGTDAAGLETQLFSR 1163

Query: 367  STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
                    + + ++I  +M   ++      S  L+    +R  S+        +      
Sbjct: 1164 EA---EKGVPNLSSIGEMMQAAAENEHKRFSHILNF--KDRYMSIEGAVDYIMEDKSVRV 1218

Query: 427  NMPQNGIEPEDVDTRINKRKME 448
                     E    R  + K+E
Sbjct: 1219 VQFTFLDNTERELLRQAETKLE 1240


>gi|302383089|ref|YP_003818912.1| PAS/PAC sensor hybrid histidine kinase [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302193717|gb|ADL01289.1| PAS/PAC sensor hybrid histidine kinase [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 524

 Score =  316 bits (810), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 94/370 (25%), Positives = 163/370 (44%), Gaps = 13/370 (3%)

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           S  + + D + I +  GI++  + + + + GY   +I  +P    +  +        + E
Sbjct: 23  SFFDVSLDLLVIRDLRGIVVKVSPSWTAILGYRPSEIEGRPLLGLVHPDDLQATWDSVRE 82

Query: 516 ILSLDLRQTLEKIT-LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA 574
           + +      +         K    L+L    ++            D++E    + +L  A
Sbjct: 83  VETRRAGDPVRGQINRYRHKNGHYLTLEWRAQR--RGQHIYGAARDVTERVAAEAELLAA 140

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
           +  AE  +  KSDFLA +SHEIRTPL  +IG  + +      P       E  + I  SG
Sbjct: 141 RAAAEAANRAKSDFLANMSHEIRTPLNGVIGIVDALSRTGLEPA----QAEMVDLIRDSG 196

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
             +  +V+D+LD+SKIE+GK++L      L++A+   I +++  A +K +      A  +
Sbjct: 197 TTLERLVSDILDVSKIEAGKLDLELHAFDLEDALRGPIDVMRAKAADKGLAFLVDIAPEV 256

Query: 695 -PRILADLRSVKQIALNILSNAIHFTPSGGQI---IISTTHTSNEEVILRVRDTGVGMTN 750
               L D   +KQ+  N+LSNA+ FT  G  +    ++        + L ++DTGVG   
Sbjct: 257 SGTFLGDSTRLKQVLTNLLSNAVKFTAEGSVVLTAWVTEDAEDQTFLSLTIQDTGVGFDE 316

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            +       F Q  ++   R  GTGLGL + ++++    G+    S P  G+   I  PL
Sbjct: 317 EQAALLFGRFNQADSTITRRFGGTGLGLSICRSLMQLMGGEIDASSEPGVGSRFCITLPL 376

Query: 811 --YDTSHPHD 818
              D   P D
Sbjct: 377 PRVDQQAPSD 386



 Score = 46.6 bits (109), Expect = 0.016,   Method: Composition-based stats.
 Identities = 33/399 (8%), Positives = 96/399 (24%), Gaps = 32/399 (8%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDL--LKRQNTWYGK 146
           D  G + ++S      +G    ++ G  L  +     +    + + ++   +  +   G+
Sbjct: 36  DLRGIVVKVSPSWTAILGYRPSEIEGRPLLGLVHPDDLQATWDSVREVETRRAGDPVRGQ 95

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
              +  +  +    + L             G   +G            A           
Sbjct: 96  INRYRHKNGHY---LTLEWRAQRR------GQHIYGAARDVTERVAAEAELLAARAAAEA 146

Query: 207 LHEIKKGHSSVEKEKYD-----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
            +  K    +    +       +           ++   + + +        L+     +
Sbjct: 147 ANRAKSDFLANMSHEIRTPLNGVIGIVDALSRTGLEPAQAEMVDLIRDSGTTLERLVSDI 206

Query: 262 L-TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
           L  S+  +     + H  +L    +          + +   +L          +  +   
Sbjct: 207 LDVSKIEAGKLDLELHAFDLEDALRGPIDVMRAKAADKGLAFLVDIAPEVSGTFLGDSTR 266

Query: 321 LTPETVDKCPIPFFVYSHGNLFYA--------NPSFLLLT------KYKSVDDIEIAGGL 366
           L     +         + G++           + +FL LT       +       + G  
Sbjct: 267 LKQVLTNLLSNAVKFTAEGSVVLTAWVTEDAEDQTFLSLTIQDTGVGFDEEQAALLFGRF 326

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
           +                + + RS    +       +             +P        +
Sbjct: 327 NQADSTITRRFGGTGLGLSICRSLMQLMGGEIDASSEPGVGSRFCITLPLPRVDQQAPSD 386

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465
                G+       R  +  +  +      +++   DGI
Sbjct: 387 PAQGAGVIGSRATDRPLRVLLAEDHPTNQRVVQLILDGI 425


>gi|163744983|ref|ZP_02152343.1| Multi-sensor Signal Transduction Histidine Kinase [Oceanibulbus
           indolifex HEL-45]
 gi|161381801|gb|EDQ06210.1| Multi-sensor Signal Transduction Histidine Kinase [Oceanibulbus
           indolifex HEL-45]
          Length = 1048

 Score =  316 bits (810), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 95/649 (14%), Positives = 224/649 (34%), Gaps = 39/649 (6%)

Query: 181 FGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG---------HSSVEKEKYDIFSQQSPP 231
           F      R  +   +    L ++    HE +              ++     +F+ Q+  
Sbjct: 291 FVAFRSMRQRSAALSELAALRERQIDAHEEENRSLIENAVTPVFLLDSNDRVLFANQAAL 350

Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291
                  +      +     DV++   +  + +   +   QE    +      ++  + T
Sbjct: 351 VCFGYGREALKDMGFADLVTDVVEDHDHEQVNATGKTCFGQELKLDL------QRNDWTT 404

Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLL 350
                + +       +  ++       + L    ++   I  F +         + ++  
Sbjct: 405 YTGERRVTAIVRDLTSELAVQDELARNKALYDLALEGAQIGVFDIDLRSGKSEVSSTWRR 464

Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
           +      + +    G       P                 +       R+       E  
Sbjct: 465 ILGMADYERLSDPQGEFLKRVHPDDLSLLIQTDQACISGQQERSVTEYRMKIGT--GEWR 522

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470
              +     + ++    +   G + +  D    +  +E    +   +L A   G+AI+  
Sbjct: 523 WMRSDAVVTERDEDGIALRMVGTQTDVTDIVHARNALETSERRFRQVLAAAPVGMAILGD 582

Query: 471 EGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
            G+  S N A+  L GY  +++L        + ++  + +   +  ++     Q  +   
Sbjct: 583 GGVFNSVNSALCSLCGYSEDELLSNTKLDDMMPEDDLNKLYAEVRGLVKSRSSQNYQAEY 642

Query: 530 LGSTKEE----KLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
             + K+      L ++     K      + + ++DI++ K+ +                K
Sbjct: 643 RITHKQGFERWGLFNVSWTFDKNTRGYVFIVQINDITDQKKLE--------------QIK 688

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
           S+F++ VSHE+RTPLT+I G    + +        P +I   +    + + +  IVND+L
Sbjct: 689 SEFVSTVSHELRTPLTSIKGAL-GLIDTTDNTRLLPAHIRLIDIARSNADRLSHIVNDIL 747

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
           D+ KI SG++   F    L   + ++++ +  +A      +     +    +  D    +
Sbjct: 748 DLEKISSGEVMFDFHDADLSSVIRDSVNEMSPFATTHNNTLGVQLPDAPLMVRVDESRTR 807

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           Q+  N++SNA  ++ +  ++ I      +  ++  +++TG G+      +  + F Q   
Sbjct: 808 QVLANLISNACKYSDAKSEVQIRAEQLGDRAIVF-IQNTGPGVPENFRPRIFQAFSQADG 866

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           S      GTGLGL + + ++    G     S P   T+     P+ +  
Sbjct: 867 SDTRAKGGTGLGLNITRQIIKRQGGTIGFESIPNGVTVFWFTCPIAEAE 915



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 34/403 (8%), Positives = 103/403 (25%), Gaps = 40/403 (9%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + +D++  +   ++      G     +  M   D+   +  D ++    +     T +G
Sbjct: 333 VFLLDSNDRVLFANQAALVCFGYGREALKDMGFADLVTDVVEDHDHE--QVNATGKTCFG 390

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK-F 204
           +     ++  +            Y+  R  +      IV     +   +    R      
Sbjct: 391 QELKLDLQRNDW---------TTYTGERRVT-----AIVRDLTSELAVQDELARNKALYD 436

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE-------YYAHKDDVLKTE 257
             L   + G   ++          +    L M +               +     +L   
Sbjct: 437 LALEGAQIGVFDIDLRSGKSEVSSTWRRILGMADYERLSDPQGEFLKRVHPDDLSLLIQT 496

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKK-QYFGTLQNNSKESFEYLSHRNHPS----LS 312
               ++ ++     +             +     T ++    +   +  +   +      
Sbjct: 497 DQACISGQQERSVTEYRMKIGTGEWRWMRSDAVVTERDEDGIALRMVGTQTDVTDIVHAR 556

Query: 313 AYFDEGENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
              +  E    + +   P+   +    G     N +   L  Y   + +        +  
Sbjct: 557 NALETSERRFRQVLAAAPVGMAILGDGGVFNSVNSALCSLCGYSEDELLSNTKLDDMM-- 614

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
            P+   N     V      R+     A              +  + +   ++        
Sbjct: 615 -PEDDLNKLYAEVRGLVKSRSSQNYQAEYRITHKQGFERWGLFNVSWT-FDKNTRGYVFI 672

Query: 432 GIEPEDVDTRINKRKMEIE-----VMQLCSILEATSDGIAIIN 469
               +  D +  ++ ++ E       +L + L +    + +I+
Sbjct: 673 VQINDITDQKKLEQ-IKSEFVSTVSHELRTPLTSIKGALGLID 714



 Score = 57.7 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 39/387 (10%), Positives = 96/387 (24%), Gaps = 39/387 (10%)

Query: 214 HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK-DDVLKTEKYPLLTSEESSLPEQ 272
            +        +F   +  P   + +      E   H     ++    P      S++   
Sbjct: 209 PAQGASYDIKVFDGLTTAPENLIFDSTGQSAEVGRHSITQTIERFGRPWTLVHVSTVGFD 268

Query: 273 EDFHTINLNQYTKKQYFGT-----LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
              H+                      + ++    LS           D  E      ++
Sbjct: 269 SAMHSAVPELLLISGLLLAILFFVAFRSMRQRSAALSELAALRER-QIDAHEEENRSLIE 327

Query: 328 KCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
               P F+   +  + +AN + L+   Y   + ++  G    + D  +  D+     V  
Sbjct: 328 NAVTPVFLLDSNDRVLFANQAALVCFGYGR-EALKDMGFADLVTDVVEDHDHE---QVNA 383

Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
                        L    W                           I  +       + +
Sbjct: 384 TGKTCFGQELKLDLQRNDWTTYTG----------------ERRVTAIVRDLTSELAVQDE 427

Query: 447 MEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFG---YPVEDILRKPFTVFLE 502
           +          LE    G+  I+ R G     +    ++ G   Y      +  F   + 
Sbjct: 428 LARNKALYDLALEGAQIGVFDIDLRSGK-SEVSSTWRRILGMADYERLSDPQGEFLKRVH 486

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL-RIIIKKLPFSSCY----SLT 557
            +  S++       +S    +++           +   +    +               T
Sbjct: 487 PDDLSLLIQTDQACISGQQERSVT-EYRMKIGTGEWRWMRSDAVVTERDEDGIALRMVGT 545

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSH 584
             D+++    +N L  +++   +  + 
Sbjct: 546 QTDVTDIVHARNALETSERRFRQVLAA 572


>gi|90421839|ref|YP_530209.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisB18]
 gi|90103853|gb|ABD85890.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisB18]
          Length = 757

 Score =  316 bits (810), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 100/426 (23%), Positives = 174/426 (40%), Gaps = 18/426 (4%)

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
           R +       A              +  IP  K       +    +  + +  R    ++
Sbjct: 46  RVELAGYHPHAVAFAGSLLVGLGCVLFAIPSIKLRAARHELRLLALHNDALADR--NWEL 103

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
           +    +  S+ E+ SD I + + EG I   N A  +L G     ++  P           
Sbjct: 104 QEAEYRARSLFESQSDLIVLRDAEGRIGFVNDAYCELAGRASAALIGSP--------DTL 155

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY--SLTMHDISEWK 565
            +      I   +  +T ++    +    + ++ R  I +              D++   
Sbjct: 156 DVLEQSEVITEPNGTRTYDQKVATAHGP-RWIAWREGIVRNDSGRPAETQCVGRDVTARA 214

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + +  L+ A+ IA+  +  KS FLA  SHEIRTPL  IIG S ++ +    P        
Sbjct: 215 ETERALAEARDIADTANRAKSRFLAMASHEIRTPLNGIIGMSGLLLDTHLTP----EQAT 270

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           YA  +  SG+ +  ++ +LLD SKIE+GK++L   P +L   + +   L+   A  + + 
Sbjct: 271 YARAVKTSGDALASLIEELLDYSKIEAGKIDLENRPFALSALIEDITELLAPRAQARHLE 330

Query: 686 IRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744
           I       +P  ++ D   ++Q+ LN+  NAI FT +GG  +I        E+   VRDT
Sbjct: 331 IAADVDERLPAEVIGDAARLRQVLLNLAGNAIKFTATGGVALIVEPGAMPGEIRFMVRDT 390

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G+      +  + F Q          GTGLGL ++  +V    G+  + S    G+  
Sbjct: 391 GIGIAPEAQARIFREFEQADELIARNYGGTGLGLSISDRIVKRMGGQITLHSAQGTGSTF 450

Query: 805 EIIFPL 810
           E + PL
Sbjct: 451 EFVVPL 456



 Score = 44.6 bits (104), Expect = 0.074,   Method: Composition-based stats.
 Identities = 24/238 (10%), Positives = 59/238 (24%), Gaps = 20/238 (8%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           DA G +  +++   +  G  +  +IG           +D       + +   T      +
Sbjct: 125 DAEGRIGFVNDAYCELAGRASAALIGS-------PDTLDVLEQSEVITEPNGTRTYDQKV 177

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
               G       +     + + +   +  +  G         +               + 
Sbjct: 178 ATAHGPRWIAWRE---GIVRNDSGRPAETQCVG--RDVTARAETERALAEARDIADTANR 232

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
            K    ++   +          P   +      L + +   +               +SL
Sbjct: 233 AKSRFLAMASHEIR-------TPLNGIIGMSGLLLDTHLTPEQATYARAVKTSGDALASL 285

Query: 270 -PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
             E  D+  I   +   +     L    ++  E L+ R          + +   P  V
Sbjct: 286 IEELLDYSKIEAGKIDLENRPFALSALIEDITELLAPRAQARHLEIAADVDERLPAEV 343



 Score = 42.7 bits (99), Expect = 0.27,   Method: Composition-based stats.
 Identities = 20/240 (8%), Positives = 54/240 (22%), Gaps = 4/240 (1%)

Query: 226 SQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLN--QY 283
                 P  ++  +V+ +          L       L               + L    +
Sbjct: 13  GTARRAPWRKLAGRVAMIFAAAFGAAYGLIVGSRVELAGYHPHAVAFAGSLLVGLGCVLF 72

Query: 284 TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY 343
                      +        +           +           +  +     + G + +
Sbjct: 73  AIPSIKLRAARHELRLLALHNDALADRNWELQEAEYRARSLFESQSDLIVLRDAEGRIGF 132

Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML-YRSDRTCIAASARLHT 402
            N ++  L    S   I     L  L  +  +++ N  +       +       + R   
Sbjct: 133 VNDAYCELAGRASAALIGSPDTLDVLEQSEVITEPNGTRTYDQKVATAHGPRWIAWREGI 192

Query: 403 IQWN-RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
           ++ +    +          A    E       +  D   R   R + +   ++ + L   
Sbjct: 193 VRNDSGRPAETQCVGRDVTARAETERALAEARDIADTANRAKSRFLAMASHEIRTPLNGI 252


>gi|228477483|ref|ZP_04062119.1| sensor protein YycG [Streptococcus salivarius SK126]
 gi|228250918|gb|EEK10106.1| sensor protein YycG [Streptococcus salivarius SK126]
          Length = 446

 Score =  316 bits (810), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 90/420 (21%), Positives = 172/420 (40%), Gaps = 36/420 (8%)

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT-RINKRKMEIEVMQLCSIL 458
           +  +    ++ +A  +    +    PE +       +  D  R+    +  E  +L S+L
Sbjct: 40  IRKLTKRVKSLMAGNYNEELRLKGDPELLELADSLNDLSDVFRLTHENLAQEKNRLSSVL 99

Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
              SDG+   NR G I   N    +L     E   +      L+   P   +  L     
Sbjct: 100 SYMSDGVIATNRRGQITMINSTAQRLLNLDYETATQMSILDLLDGENPYTYSELL----- 154

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHA 574
               +T E         ++ ++LR+    +   S +       +HD +E ++E+ +    
Sbjct: 155 ---SKTPEIHLSRRDANDEFVTLRVNFALIRKESGFISGLVAVLHDATEQEKEERERRL- 210

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
                        F++ VSHE+RTPLT++  + E +     G L       +        
Sbjct: 211 -------------FVSNVSHELRTPLTSVKSYLEAL---DDGALDEEIAPNFIKVSLDET 254

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV-----QLYANEKRILIRTS 689
           N ++ +++DLL +S+I++    L  E  +    ++  ++       Q     K   I   
Sbjct: 255 NRMMRMISDLLALSRIDNKSTQLDVEMTNFTAFMTYILNRFDQIKSQETNTGKTYEIIRD 314

Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749
           +  N   +  D   + Q+  NIL+NAI ++P GG+I +S   T + ++I+ + D G+G+ 
Sbjct: 315 YPVNSIWVEIDTDKMTQVVDNILNNAIKYSPDGGKITVSMKTTDS-QLIVSISDQGLGIP 373

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             +L      F ++  ++     GTGLGL +AK ++  + G  +  S   KG+   I+ P
Sbjct: 374 KKDLPLIFDRFYRVDKARSRAQGGTGLGLSIAKEIIKQHKGFIWAKSEYGKGSTFTIVLP 433


>gi|254513206|ref|ZP_05125271.1| sensory box histidine kinase/response regulator [Rhodobacteraceae
           bacterium KLH11]
 gi|221532210|gb|EEE35206.1| sensory box histidine kinase/response regulator [Rhodobacteraceae
           bacterium KLH11]
          Length = 820

 Score =  316 bits (810), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 92/482 (19%), Positives = 182/482 (37%), Gaps = 14/482 (2%)

Query: 337 SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA 396
                  +        K + +  I+       +          A++P +   +       
Sbjct: 98  REDAAAQSVLRATEDFKTRLIPLIDGPDRQLRVGLPELRMRIQALRPQIRELALGGIQGF 157

Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
            A+ +  +        +              +    +       ++  R+ +    +  +
Sbjct: 158 -AQENADRRAELAGTLIRLASLLVVLFIALLLAFAILVKLFRQGQLLARQSQSASNRFEA 216

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT-PSVMNHYLTE 515
            + ++ D + +++  G IL  N A   +FGY   + +       +       +    +  
Sbjct: 217 AITSSLDAVLVVDTSGRILEFNGAAEDVFGYTQAEAIGADMADLIVPEHLRDLHRKGMAR 276

Query: 516 ILSLDLRQTL---EKITLGSTKEEKLLSLRIIIK--KLPFSSCYSLTMHDISEWKQEKNK 570
            L    ++ +        G  K ++   + + I   +      +   + DI+E  + +  
Sbjct: 277 FLETGEQKVIGAGRVRLEGLRKSQETFPVELSISLAETNGERVFVSFLRDITEDLKAEED 336

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           L  A+  A++    KSD L  +SHE+RTPL  I+G +E+I           R   + + I
Sbjct: 337 LRTARDKAQESEQAKSDLLTVMSHEMRTPLNGILGSAELIDRSNL----TDRQKRHLHSI 392

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS- 689
           + SG L+L  V D+LD S++ SG          + + V E    +   A+ +   ++   
Sbjct: 393 EVSGKLLLSHVTDVLDFSRLGSGNALRDKSNFDICKVVREVADSLTANADARGNDLKVDV 452

Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST-THTSNEEVILRVRDTGVGM 748
            +  +  +L    +++Q  +N+L NAI FT  G  + I       N+ V  R+ DTGVG+
Sbjct: 453 LSEELCEVLGYRTALQQCLVNLLGNAIEFTRDGS-VTIEVERLRHNDLVEFRIADTGVGI 511

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           +   L+     F  I  +      GTGLGL + K + +A  G     S   +G+L  +  
Sbjct: 512 SPEYLDVIFDEFVTIDTAFARDKSGTGLGLAITKRLAEAMGGDISADSVLGEGSLFSMRL 571

Query: 809 PL 810
           PL
Sbjct: 572 PL 573



 Score = 51.2 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/143 (14%), Positives = 43/143 (30%), Gaps = 11/143 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNTWYGK 146
           +D  G + E +       G    + IG  + D+    H+   +   +   L+        
Sbjct: 228 VDTSGRILEFNGAAEDVFGYTQAEAIGADMADLIVPEHLRDLHRKGMARFLETGEQKVIG 287

Query: 147 TTLWPIEG---TNLYVPIDLA-ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
                +EG   +    P++L+ +L   +  R F  F     +     D       +    
Sbjct: 288 AGRVRLEGLRKSQETFPVELSISLAETNGERVFVSF-----LRDITEDLKAEEDLRTARD 342

Query: 203 KFSHLHEIKKGHSSVEKEKYDIF 225
           K     + K    +V   +    
Sbjct: 343 KAQESEQAKSDLLTVMSHEMRTP 365


>gi|260775399|ref|ZP_05884296.1| aerobic respiration control sensor protein ArcB [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260608580|gb|EEX34745.1| aerobic respiration control sensor protein ArcB [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 779

 Score =  316 bits (810), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 83/408 (20%), Positives = 168/408 (41%), Gaps = 19/408 (4%)

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
               +         +E E       + ++      L S ++A+ D I   N +G+    N
Sbjct: 122 RIKAEEAREEAMKDLENEVYQRERTQLELAERTALLRSFIDASPDLIYYRNADGVFSGCN 181

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
           RA+ +L G     ++         +     +     ++ + +   T E+        +  
Sbjct: 182 RAMEELTGKKENQLVGLTPWDVYSKEVAQQIVDTDEKVFADNQALTYEQWLEYPDGHKNY 241

Query: 539 LSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
             LR +                 DI+E K+ +  L       +K S  K+ F++ +SHE+
Sbjct: 242 FELRKVPFYSKDGRHLGLVGFGRDITERKRHEESL-------KKASRDKTTFISTISHEL 294

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTPL  I+G S ++ + +           +   I+ S   + +I ND++D+ K +  K+ 
Sbjct: 295 RTPLNGIVGLSRMLLDTQM----TDEQRNHMQTINVSAITLGNIFNDIIDMDKFDRRKLE 350

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNA 715
           L    ++ +E V+E  S+  L A++K +       +++P  I  D   ++Q+  N++SNA
Sbjct: 351 LFPSSLNFEEFVAEMESISALMASQKGLRFDLERLSDLPTAIDVDATRLRQVLWNLISNA 410

Query: 716 IHFTPSGGQI-IISTTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGE 772
           + FT  GG +  +          + + + D+G+G+   EL+K    + Q+ + +      
Sbjct: 411 MKFTKEGGVVMTVEAEVDEEYANITMEIEDSGIGIPEAELDKIFAMYYQVKSGKDNLHAV 470

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF--PLYDTSHPHD 818
           GTG+GL ++K ++    G   + S    G+   +    PL       +
Sbjct: 471 GTGIGLAVSKQLIKMMDGDITVSSEEGFGSTFTVTIHVPLSVVEEEPE 518



 Score = 48.5 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/198 (14%), Positives = 63/198 (31%), Gaps = 14/198 (7%)

Query: 23  QDLSK--KKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIP 80
           Q++SK  ++I+   + E++++E       +  N   Q + +      L      +   I 
Sbjct: 110 QNISKLNQEIEERIKAEEAREE----AMKDLENEVYQRERT---QLELAERTALLRSFID 162

Query: 81  RTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKR 139
            +    +  +A G     +  + +  G    +++G+   DV          +    +   
Sbjct: 163 ASPDLIYYRNADGVFSGCNRAMEELTGKKENQLVGLTPWDVYSKEVAQQIVDTDEKVFAD 222

Query: 140 QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199
                 +  L   +G   Y   +L  +P YS++    G  GFG               K+
Sbjct: 223 NQALTYEQWLEYPDGHKNYF--ELRKVPFYSKDGRHLGLVGFG--RDITERKRHEESLKK 278

Query: 200 LDKKFSHLHEIKKGHSSV 217
             +  +            
Sbjct: 279 ASRDKTTFISTISHELRT 296


>gi|298386496|ref|ZP_06996052.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
 gi|298260873|gb|EFI03741.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
          Length = 785

 Score =  316 bits (810), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 98/515 (19%), Positives = 196/515 (38%), Gaps = 28/515 (5%)

Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDI 360
            L      +      +   +    +DK       V S G L YAN  F+           
Sbjct: 146 VLIMCRDITERVATQQQLEIFKSVLDKVSDSILAVSSDGTLVYANKQFMEEYGVT----- 200

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLY--RSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
               G   + D P       +    L   R +    +  A        +     ++    
Sbjct: 201 -QQMGTQKIYDLPVSMRTPELWEAKLKDIRDNGGSFSYRAAYVRKGEEKNRVHQVSTYLT 259

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR--EGIILS 476
           ++ +             +  D    + ++    + L  IL      + + +   +   L 
Sbjct: 260 QEDDTE----LIWFFTQDITDVIKKRDELRELNLLLDGILNNVPVYLYVKDPEDDFRYLY 315

Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQN-TPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
            N+A ++    P    + +       +            E++    R  +++  + +T E
Sbjct: 316 WNKAFAEHSKIPASRAIGRTDFEIFPERADAERFRRDDLELIRTHERIDMQETYVAATGE 375

Query: 536 EKLLSLRIIIKKLPFSSCY-SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
            +++     +  +            DI+ ++  + +L  A+  AE+    K+ FLA +SH
Sbjct: 376 TRIVQTLKALVPMEGREPLLIGISWDITNFQNIEQELIKARIKAEQSDRLKTAFLANMSH 435

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           EIRTPL AI+GFS ++               Y++ I+++  ++L ++ND+LD+SKIE+G 
Sbjct: 436 EIRTPLNAIVGFSNLL----PSAETLEEEKLYSSIINQNSEILLQLINDILDLSKIEAGT 491

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714
           +    +P++L E       + +    E  + +     ++   I  D   + Q+  N L+N
Sbjct: 492 LEYVRQPMNLGEVCRNIYQIHKDRVQE-GVTLILDNEDDDLIIEEDRNRIAQVITNFLTN 550

Query: 715 AIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           A  FT SG +I        N+ +   V+DTG+G+   ++      F ++ +      +GT
Sbjct: 551 AGKFTLSG-EIRFGFKV-DNQCIRFYVKDTGIGIAPDKVGHIFDRFVKLNSF----AQGT 604

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GLGL + + +++   G+    S   KG+      P
Sbjct: 605 GLGLAICRMIIEKIGGEIGATSEVGKGSTFFFTIP 639



 Score = 48.5 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/127 (12%), Positives = 38/127 (29%), Gaps = 5/127 (3%)

Query: 457 ILEATSDGIAIINREGI-ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           IL +  D + + N + + I   +   +   G   +D         +       ++  + +
Sbjct: 52  ILNSLPDMLTVFNHDEVGIEVVSNEETNHVGISNKDFEGMHMRQMVPPEAYQNIHANMQK 111

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575
           +++                          I  L       +   DI+E    + +L   K
Sbjct: 112 VIATRTVSAAHHDM---DFNGSHHYYENRIFPL-DEEYVLIMCRDITERVATQQQLEIFK 167

Query: 576 KIAEKES 582
            + +K S
Sbjct: 168 SVLDKVS 174


>gi|303247580|ref|ZP_07333851.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio
           fructosovorans JJ]
 gi|302491060|gb|EFL50954.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio
           fructosovorans JJ]
          Length = 839

 Score =  316 bits (810), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 118/654 (18%), Positives = 224/654 (34%), Gaps = 59/654 (9%)

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244
              ++     AL +  ++          G  S++     + + +     L    +     
Sbjct: 56  QDEQLRETRAALAETRERFADLYECAPIGFLSLDAAGGIVAANRQAAAMLGHTPETLPGQ 115

Query: 245 EY---YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301
            +    A  D                           +      +         +     
Sbjct: 116 PFSRFVARADQPCLRALRDRAGRTGERQTAGIRLLRPDQTGRYVEIAATPAGRPTGPDTG 175

Query: 302 YLSH--RNHPSLSAYFDEGENLTPETVDKCPI-----PFFVYSHGNLFYANPSFLLLTKY 354
              H   +        +E   L    ++  P             G + Y + +      +
Sbjct: 176 RGLHIALSDLPPRRESEEALRLADGILETGPAFLLRFAVSGEEPGPVEYVSANIDR-FGF 234

Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
                I  A     L+ A  L    A         +  CI      + ++     +  +T
Sbjct: 235 SREKLISGALLPRELVHADDLPKVEAALRENAVAGNDACI----LDYRLRTGDGQTRYVT 290

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA--IINREG 472
                  + F        +  +  D+ + ++ +E       ++L++    I    +   G
Sbjct: 291 DHARLLRDAFGRVNAVQSLVLDVTDSALARQDLE-------TVLDSAPIPIVKVRVTPHG 343

Query: 473 -IILST-NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530
             IL   N A ++LFG   E  L K    +L +          + +         ++   
Sbjct: 344 DRILEYQNPAAARLFG---EAALGKSCKAYLCKKETCPALSADSGV-------VRDRECA 393

Query: 531 GSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
            +T   + + +     KLP  S     M D++E  + +  L+ A + AE  +  KS+FLA
Sbjct: 394 VTTLRGERV-MYKTAHKLPDGSGIIEAMVDVTELMRTRQNLTRAMEAAEAANKAKSEFLA 452

Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650
            +SHEIRTP+  I+G +E+               EY +   +S   +LDIVND+LD S+I
Sbjct: 453 TMSHEIRTPINGIMGMTELALQTDLTG----EQREYLDLARQSALSLLDIVNDILDFSRI 508

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIAL 709
           E+G++ L   P S    +   + L    A      +  S   ++P  ++ D   + Q+  
Sbjct: 509 EAGRVELSAAPFSPRRMLGRCLRLFDTLAARHGNTLSLSVHPDVPETLIGDAGRLGQVVA 568

Query: 710 NILSNAIHFTPSGGQIIISTTHTSNEEVI----------------LRVRDTGVGMTNYEL 753
           N++SN + FT   G + +     +  E++                  V DTG+G+   + 
Sbjct: 569 NLVSNGLKFT-RNGDVRLCVEPDTQNEILCADPSDTPPGNRVSLLFSVIDTGIGIPAAKQ 627

Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           ++  +PF Q+  S      GTGLGL +   +V    G+ ++ S P KG+     
Sbjct: 628 DRIFEPFTQLDGSLTRGVGGTGLGLSICNNLVALMGGRLWLSSRPGKGSTFYFT 681



 Score = 80.8 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 21/154 (13%), Positives = 51/154 (33%), Gaps = 4/154 (2%)

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
           +      Q  +  +D   R  +  +     +   + E    G   ++  G I++ NR  +
Sbjct: 43  RDALRASQEALSRQDEQLRETRAALAETRERFADLYECAPIGFLSLDAAGGIVAANRQAA 102

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
            + G+  E +  +PF+ F+ +     +            RQT     L   +  + + + 
Sbjct: 103 AMLGHTPETLPGQPFSRFVARADQPCLRALRDRAGRTGERQTAGIRLLRPDQTGRYVEIA 162

Query: 543 IIIKKLP----FSSCYSLTMHDISEWKQEKNKLS 572
                 P          + + D+   ++ +  L 
Sbjct: 163 ATPAGRPTGPDTGRGLHIALSDLPPRRESEEALR 196



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/326 (10%), Positives = 81/326 (24%), Gaps = 28/326 (8%)

Query: 50  EQSNFTDQNQESVSNTNYLDSENTFVFDP--IPRTVRFTWNIDAHGYLKEISEELPKTIG 107
                  +  E +  T    +E    F        + F  ++DA G +   + +    +G
Sbjct: 48  ASQEALSRQDEQLRETRAALAETRERFADLYECAPIGFL-SLDAAGGIVAANRQAAAMLG 106

Query: 108 NYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT-----TLWPIEGTNLYVPID 162
           +    + G              +      L+ +    G+       L   + T  Y  ++
Sbjct: 107 HTPETLPGQPFS----RFVARADQPCLRALRDRAGRTGERQTAGIRLLRPDQTGRY--VE 160

Query: 163 LAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKY 222
           +AA P        +G      +       +     +  D             +   +E  
Sbjct: 161 IAATPAGRPTGPDTGRGLHIALSDLPPRRESEEALRLADGILETGPAFLLRFAVSGEEPG 220

Query: 223 DIFSQQSPPPHLRMKNK------VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFH 276
            +    +         +      +      +A     ++        +   +        
Sbjct: 221 PVEYVSANIDRFGFSREKLISGALLPRELVHADDLPKVEAALRENAVAGNDACILDYRLR 280

Query: 277 TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY 336
           T +        +   L++         S     + SA   +        +D  PIP    
Sbjct: 281 TGDGQTRYVTDHARLLRDAFGRVNAVQSLVLDVTDSALARQD---LETVLDSAPIPIVKV 337

Query: 337 S----HGNLF-YANPSFLLLTKYKSV 357
                   +  Y NP+   L    ++
Sbjct: 338 RVTPHGDRILEYQNPAAARLFGEAAL 363


>gi|281355936|ref|ZP_06242429.1| multi-sensor hybrid histidine kinase [Victivallis vadensis ATCC
           BAA-548]
 gi|281317305|gb|EFB01326.1| multi-sensor hybrid histidine kinase [Victivallis vadensis ATCC
           BAA-548]
          Length = 835

 Score =  316 bits (810), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 113/637 (17%), Positives = 234/637 (36%), Gaps = 49/637 (7%)

Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLH--EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV 240
            +    +   PR    R + +   L    +                          ++++
Sbjct: 88  TIDDVLLTGHPRLAELRFEGRQWRLRFSGVDPNVFGKPAVAMAAVDITEHLQLEEERDRL 147

Query: 241 SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF 300
               E Y + +  +      L+    ++    E    ++ ++         L+     + 
Sbjct: 148 HEQLEGYVNLERTVNRCLEALIPDSGTADVTDEVMRIVSTHELGDACGIYRLEAGEGRAV 207

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDI 360
                +   S +A         PE ++  P   ++             L      S   +
Sbjct: 208 LEYGWQAAGSGNAAK------LPEHLELAPGGDWLERMEKGEVVRGGVLS----SSDPVL 257

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
                 +     P      A    +  R D            + +     +         
Sbjct: 258 RQLCTGAA--GRPGFRSALASGIRVSERLDG--------FAVLLFRGGEEVL-------N 300

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
             +    +  + I     + R +  +++    +   I++     I +++    ++  N A
Sbjct: 301 KMEDRAIVAISRILSLAAEKRRSLEQLKRSEREKSMIIDHIDTAIMLLDGREHLIKVNPA 360

Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
            + + G    ++L +P         P      ++E         L+    G +     + 
Sbjct: 361 AAAIAGKSEAELLAEPCYQNFCGCGPDFDKCPVSESFRTRRPAVLDVEIGGRSYIASAVP 420

Query: 541 LRIIIKKLPFSSCYSLTMH---DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
           +      L         +H   D++  K+ + K+  + K AE  +  KS FLA +SHEIR
Sbjct: 421 V------LDDDGEIINVIHTLVDVTNRKETEAKIRGSLKEAEVANRAKSTFLATMSHEIR 474

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TPL AIIGFSE++KN+          +E    I+ +G  +L ++ND+L+ISKI++ K+ +
Sbjct: 475 TPLNAIIGFSEILKNEGLPA----EALESVEAINAAGESLLALINDVLEISKIDADKLEI 530

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
            +  + L+  + +   + +    +K++ +R    +++P        ++QI  N+L NA+ 
Sbjct: 531 IYGWIRLETVLGDVGRIFEPQLRQKQLALRMEIPSSLPEFHFSASRLRQILYNLLGNAVK 590

Query: 718 FTPSGGQIIISTTHTSN----EEVILRVRDTGVGMTNYELEKAMKPFGQ--IPNSQQIRG 771
           FT SG  + +            E+ + V DTG G+T  + +K  +PF Q    ++     
Sbjct: 591 FTVSGS-VTVMAAVRKGTGNQAELEIAVTDTGSGITPEDQKKIFEPFVQSRTGDAGGDAS 649

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           EGTGLGL + + + +   G+  + S P +G+   I+F
Sbjct: 650 EGTGLGLAIVRRLAEKMNGEVLLESEPGRGSRFRIVF 686


>gi|53712152|ref|YP_098144.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
 gi|52215017|dbj|BAD47610.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
          Length = 929

 Score =  316 bits (810), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 105/644 (16%), Positives = 233/644 (36%), Gaps = 35/644 (5%)

Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS 242
           I    R   D     +   +       +     ++ ++   +           + +++  
Sbjct: 293 ICIELRKAKDEAVRERSFLRNLFRFMPMGYIRMTMVRDAAGLPCDYRIADANDLSSELIG 352

Query: 243 LTEYYA------HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS 296
           ++                K +   LL   E S+ ++ D +     + +    +   ++  
Sbjct: 353 MSLSDYVGCLASELHADFKAKVDYLLDVMEGSVHKETDVYFHRTQRSSHCIVYSPEKDEV 412

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYK 355
              F  L            D  E L        P    +Y   GNL   N   +     K
Sbjct: 413 VALF--LDSTETIRAHRALDRSEKLFKNIFANIPAGVEIYDKDGNLLDLNNWDMETFGVK 470

Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
              D+             ++ +    + ++ +R +    + +        ++ N + +  
Sbjct: 471 DKADVMGVNFFENPNVPLEIRERVRNEDLVDFRLN---YSFNKASDYYHSDKSNIIELYT 527

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA---IINREG 472
              +  +          I  ++ +      ++         I +    G A   ++++ G
Sbjct: 528 KVSKLFDSQGNFNGYVLINIDNTERIDAINRIRDFENFFLLISDYAKVGYAKLNLLSKRG 587

Query: 473 I-ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
             I    + + +    P+  ++       +       +  +  ++L+ + +    ++ + 
Sbjct: 588 YAIKQWFKNMGETEDIPLSSVVG--VYDKMHPEDRQKVFDFYEKVLAGEEKDFRSEMRIL 645

Query: 532 STK---EEKLLSLRIIIKKLPFSSC---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
                 E   + + +++ K              +DI+E K+ +  L  AK+ AE     K
Sbjct: 646 KPGATNEWNWVRMNVVVTKFEPEHGEVEIIGINYDITELKETEAMLIEAKEKAETMDRLK 705

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
           S FLA +SHEIRTPL AI+GFS ++ +            EY   +  + +L+L +++D+L
Sbjct: 706 SAFLANMSHEIRTPLNAIVGFSGLLVDTE----DMEERCEYIKIVQENNDLLLQLISDIL 761

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
           D+SKIE+G     +    ++    + +   Q+   +  + +      +   +++D   + 
Sbjct: 762 DLSKIEAGTFEFTYGETDVNMLCEDIVRSSQIKVPQ-GVELVFDPHPSDCTVISDRNRLH 820

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           Q+  N ++NA+ FT SG  I +         V   V DTG+G++  +L    + F ++ +
Sbjct: 821 QVISNFVNNALKFTSSGS-IHVGYEKKEEG-VEFYVSDTGIGISKEQLTHIFERFVKLNS 878

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
                  GTGLGL + K++V+   G   + S   KG+      P
Sbjct: 879 FIH----GTGLGLSICKSIVEQLGGVIGVDSEERKGSRFWFTIP 918


>gi|307578718|gb|ADN62687.1| PAS/PAC sensor signal transduction histidine kinase [Xylella
           fastidiosa subsp. fastidiosa GB514]
          Length = 510

 Score =  316 bits (810), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 94/483 (19%), Positives = 179/483 (37%), Gaps = 35/483 (7%)

Query: 338 HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397
            G     N SF    +  SV          ++           IK           +   
Sbjct: 23  DGIFRLTNASFGRHLRLDSV-------VGESVCGIMPDDGPEYIKRYGGVALSGQRVHFE 75

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
           AR    +W         +         PE      +  +  + +  +R++    ++   +
Sbjct: 76  ARALR-RW---------YSVEVMRVGAPEGRLLGVLFVDITEHKRMERRLAESEVRFNIL 125

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
            +     + + + +G +   N A  + FG  +       +++ L      +    L+  L
Sbjct: 126 ADGLPMPVWVFDAQGGMRFVNTAYGEFFGVDLSSGTLPEWSMVLHPEDVLIFEFKLSAAL 185

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM----HDISEWKQEKNKLSH 573
               +  L  +      + +   + +          + + +     D++E  + +     
Sbjct: 186 KT--QSALRALVRARRYDGQWRWIEMSATPRYSPDGHFIGLTGSSQDVTERLEIELAREQ 243

Query: 574 -------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
                  A+  AE  +  K +FL+ +SHE+RTPLT I+G+SE++  +      +P Y   
Sbjct: 244 LLKSERAARNEAENMARLKDEFLSTLSHELRTPLTTILGWSELLLQRI--EEQHPCYKG- 300

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
            + I  S  +   +++D+LD+S +  GKM L  E + L E + E I L +     K   +
Sbjct: 301 LSVIASSAKVQKRLISDMLDLSSMLLGKMQLEMEVLDLVEQIREVIGLYEQVVESKGQRL 360

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
                     +L D   ++QI  N+LSNAI FTP+ G I +       +   + V D+G 
Sbjct: 361 LLRAPEMPCLVLGDATRLRQIFENLLSNAIKFTPTDGCIDVEID-ADGDSFRVSVTDSGD 419

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIE 805
           G+    L      F Q   +      G GLGL + +++V+ + G     S    KG +  
Sbjct: 420 GIAAEFLPHLFSRFRQADGTTTRCHGGLGLGLAIVQSLVEMHGGYVGATSPGLGKGAMFT 479

Query: 806 IIF 808
           +  
Sbjct: 480 VSL 482



 Score = 65.0 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 26/170 (15%), Positives = 51/170 (30%), Gaps = 6/170 (3%)

Query: 68  LDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI 127
            +SE  F        +   W  DA G ++ ++    +  G             V     +
Sbjct: 116 AESEVRFNILADGLPMP-VWVFDAQGGMRFVNTAYGEFFGVDLSSGTLPEWSMVLHPEDV 174

Query: 128 DP-NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHV 186
                 +   LK Q+           +G   +  I+++A P YS +  F G  G      
Sbjct: 175 LIFEFKLSAALKTQSALRALVRARRYDG--QWRWIEMSATPRYSPDGHFIGLTG--SSQD 230

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM 236
                +     ++L K         +  + ++ E     S +   P   +
Sbjct: 231 VTERLEIELAREQLLKSERAARNEAENMARLKDEFLSTLSHELRTPLTTI 280



 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/205 (9%), Positives = 53/205 (25%), Gaps = 15/205 (7%)

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL--SHRNHPSLSAYFDEGENLT 322
              +L  Q         +         +          L      H  +     E E   
Sbjct: 63  GGVALSGQRVHFEARALRRWYSVEVMRVGAPEGRLLGVLFVDITEHKRMERRLAESEVRF 122

Query: 323 PETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYK-SVDDIEIAGGLSTLLDAPKLSDNNA 380
               D  P+P +V+   G + + N ++        S   +     +          ++  
Sbjct: 123 NILADGLPMPVWVFDAQGGMRFVNTAYGEFFGVDLSSGTLPEWSMVLH-------PEDVL 175

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
           I    L  + +T  A  A +   +++      +      + +     +   G   +  + 
Sbjct: 176 IFEFKLSAALKTQSALRALVRARRYDG-QWRWIEMSATPRYSPDGHFIGLTGSSQDVTER 234

Query: 441 ---RINKRKMEIEVMQLCSILEATS 462
               + + ++        +  E  +
Sbjct: 235 LEIELAREQLLKSERAARNEAENMA 259


>gi|83815587|ref|YP_444323.1| sensor histidine kinase [Salinibacter ruber DSM 13855]
 gi|83756981|gb|ABC45094.1| sensor histidine kinase [Salinibacter ruber DSM 13855]
          Length = 650

 Score =  316 bits (810), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 119/652 (18%), Positives = 226/652 (34%), Gaps = 39/652 (5%)

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY 246
               + P ALG+R   +   +  +    S +     D   Q  P     ++N V  L   
Sbjct: 6   TDALSRPSALGRRSAFQLLLVVGLTLTASLLFDVYADWVRQGDPLWTTVLENLVPILLAL 65

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS-- 304
                     +                                  LQ   K +   L   
Sbjct: 66  ALPYVGWRLLQSPSGAPYLPDVAKYALVESLGLGLLAGLVVGVQVLQEEIKPAVIVLQLT 125

Query: 305 -------------HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS----HGNLFYANPS 347
                               +    +  N     +D  P+P           N+  AN +
Sbjct: 126 TVGGIAGLCVGYSTAQLKEATRDAQDDRNRLENLLDGLPVPVVHGRVEGETLNILAANAA 185

Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
           F     +   + I        L D  +          + +++    IA  A +     + 
Sbjct: 186 FERAFGHDPEESIGEN-----LYDLIRPGGIQRGAERINHQALDEGIA-EAEVQCETLDG 239

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
           +    +       +              +  + +  + +++    +L   L+ +  G   
Sbjct: 240 QREFQLRVAQALDSGASETYSVYM----DITERKRREERLQTLYARLQLALDVSDTGTFD 295

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKP--FTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
              +   +  +    +LFGY           +   +  +        + + +    +   
Sbjct: 296 WEIQAGEVIWDETSERLFGYEPGGFPGTFAAWAQHVHPDDLPGAREDIEQAIENQEKYKT 355

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
           E        +++ +  + +++               DI+E K+ +  L  AK+ AE+ + 
Sbjct: 356 EFRVQIPGGQQRWIEAQGVVEYDDRGEPIRMLGIHTDITERKKREQTLREAKERAEEAAR 415

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
            KS  LA +SHEIRTPLT+I GFSEV++    G  G+     +A  I +S   +   +  
Sbjct: 416 LKSAMLANMSHEIRTPLTSITGFSEVLEQNLSGQHGD-----FATKIRKSSERLQRTLES 470

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703
           +L +SK+ES    L  E VSL   V +  + ++    EK + ++T   ++    +++  +
Sbjct: 471 VLHLSKLESSVHKLEREEVSLRAVVEDVTAALRDDLTEKSLALQTEIPDSPVSGISNEDA 530

Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
           + +I  N+L NAI FTP+GG + I           L + D+G+GM    +    + F Q 
Sbjct: 531 LHRICRNLLENAIKFTPAGGCVGIRL-LDEGRSATLEIEDSGIGMDPENVPGLFQAFRQE 589

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
                   EG+GLGL + K + D   G+  + +   +GT   +  PL D +H
Sbjct: 590 SEGMAREYEGSGLGLSIVKRLTDELGGEVDVETEKGEGTCFAVTLPLTDDAH 641


>gi|260662553|ref|ZP_05863448.1| two-component sensor histidine kinase [Lactobacillus fermentum
           28-3-CHN]
 gi|260553244|gb|EEX26187.1| two-component sensor histidine kinase [Lactobacillus fermentum
           28-3-CHN]
          Length = 619

 Score =  316 bits (810), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 87/427 (20%), Positives = 172/427 (40%), Gaps = 47/427 (11%)

Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM-EIEVMQLC 455
             R  T++  R       F    K     E     G            ++  + E  +L 
Sbjct: 212 EMRKQTLRIARG-----DFSGQVKVMGNDELGQLAGAVNNLSVRVEESQESSDAERRRLD 266

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRKPFTVFLEQNTPSVMNHYLT 514
           S+L   SDG+   +R G +   N    +       E +L K     L+      + H + 
Sbjct: 267 SVLSHMSDGVLATDRRGNLTIVNNTALQFLNIADEEQVLGKSILDVLKIRRQFSIRHLVD 326

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS----LTMHDISEWKQEKNK 570
           E     +   L +  +          L      +   S +       +HD++  ++E+ +
Sbjct: 327 EDQDQVILDNLNEDLI----------LSAYFSPIKRESGFVSGLVCVLHDVTSQQKEERE 376

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI-EYANY 629
                         + +F++ VSHE+RTPLT++  + E + +   G + +P     +   
Sbjct: 377 --------------RKEFVSNVSHELRTPLTSVKSYVEALSD---GAINDPELAPRFLGV 419

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN-------EK 682
           +      ++ ++NDLL +S+++SG   L+ E V+++E  +  ++   +          +K
Sbjct: 420 VSDETERMIRMINDLLSLSRMDSGTAKLNLEYVNINELFNYILNRFDMIIKNEAADPSQK 479

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           +  I          +  D     Q+  NI++NA+ ++P GG I       ++  VIL + 
Sbjct: 480 KYTIVRYLTKKDLWVEIDTDKFTQVVDNIMNNAVKYSPDGGVITARL-LETHNHVILSIS 538

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G+G+   +L      F ++  ++  +  GTGLGL ++K +V+   G+ ++ S   KG+
Sbjct: 539 DQGLGIPRKDLGHIFDRFFRVDKARSRKQGGTGLGLAISKEVVNLLGGQIWVDSVEGKGS 598

Query: 803 LIEIIFP 809
              I  P
Sbjct: 599 TFYISLP 605


>gi|206890531|ref|YP_002249149.1| two-component system sensory histidine kinase [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206742469|gb|ACI21526.1| two-component system sensory histidine kinase [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 890

 Score =  316 bits (810), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 77/255 (30%), Positives = 130/255 (50%), Gaps = 10/255 (3%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E  +    L  A K  ++  + KS F+A +SHE+RTP+ AIIG+++++ ++  GPL N  
Sbjct: 279 ERDELVALLQKANKQLKELDTLKSAFIANMSHELRTPMNAIIGYTDLLLDEVDGPL-NDD 337

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                  +  +   +L ++ND+LDISKIESGK+ LH   + L E +   +   +    +K
Sbjct: 338 QKTSLKKVAANARHLLQLINDVLDISKIESGKIELHPREIDLKELIDGIMVTFEPLIAKK 397

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE------ 736
            +    +  +   ++  D    KQI +N++SNA+ FT  GG I I    +   +      
Sbjct: 398 GLSFTLNIESGAEKLYVDEDKTKQILINLISNAVKFTHQGG-ITIKAKVSERGKAKDGSP 456

Query: 737 --VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
             + + V DTG+G+   +L+K    F Q   S   + EGTGLGL + + +V  + G  + 
Sbjct: 457 QFIEISVSDTGIGIKREDLDKIFDKFAQADVSTTRQYEGTGLGLSIVRGLVALHKGMVWA 516

Query: 795 FSTPAKGTLIEIIFP 809
            S   KG+   ++ P
Sbjct: 517 ESEVGKGSTFYVLLP 531


>gi|90580601|ref|ZP_01236406.1| putative sensor histidine kinase FexB [Vibrio angustum S14]
 gi|90438259|gb|EAS63445.1| putative sensor histidine kinase FexB [Photobacterium angustum S14]
          Length = 789

 Score =  316 bits (810), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 96/452 (21%), Positives = 185/452 (40%), Gaps = 20/452 (4%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           +++  +   L        +    L   Q     +     I   +  +       + +E E
Sbjct: 81  EDSRQRLSKLVTKLEEMRSRDMEL-NKQLQDNIAQLNLEIEEREKAEEAREEAMHDLENE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
                  +  +  +   L S L+A+ D I   N +      NRA+S+L G   ++++   
Sbjct: 140 VYQRENAQVAVAEQSALLKSFLDASPDLIYYRNEKNQFSGCNRAMSELVGKTEKELVGLT 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CY 554
                 +     +     E+ + D   T E+  +    +  L  LR +            
Sbjct: 200 PWDVYPEEVAKKIIKTDEELFNEDSAMTDEQWLVYPNGKRALFELRKVPFYNRNGRRLGL 259

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+ ++ L       EK SS K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 260 MGFGRDITERKKYEDAL-------EKASSDKTSFISTISHELRTPLNGIVGLSRMLLDTD 312

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                      Y   +  S   + +I ND++D+ K +  ++ L  +P+  +E + E  ++
Sbjct: 313 L----TDEQRGYLRTVHVSAITLGNIFNDIIDLDKSDRRRLELMPKPLDFNEFIDEMGNI 368

Query: 675 VQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQI-IISTT-H 731
            QL A +K +         +P  I  D   ++Q+  N++ NA  FT  GG I  +S+  H
Sbjct: 369 SQLMAEQKGLRFDLECLTELPKNIEVDSTRLRQVLWNLIGNATKFTKQGGVILSVSSEIH 428

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP-NSQQIRGEGTGLGLPLAKAMVDANMG 790
             + ++I  V D+GVG+   E++     + Q+      I   GTG+GL +++ +V    G
Sbjct: 429 EHDADIIFEVEDSGVGIPKSEIDNIFAMYYQVKQGDDNIHAVGTGIGLAVSRQLVQLMGG 488

Query: 791 KFYIFSTPAKGTLIEI--IFPLYDTSHPHDCI 820
              + S   +G+   +    PL +     + +
Sbjct: 489 DITVHSEVGEGSTFTVKIRVPLVEDVIEEEIV 520



 Score = 45.0 bits (105), Expect = 0.046,   Method: Composition-based stats.
 Identities = 15/123 (12%), Positives = 34/123 (27%), Gaps = 3/123 (2%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEG 154
               +  + + +G    +++G+   DV             + L  +++       W +  
Sbjct: 177 FSGCNRAMSELVGKTEKELVGLTPWDVYPEEVAKKIIKTDEELFNEDS-AMTDEQWLVYP 235

Query: 155 TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214
                  +L  +P Y+RN    G  GFG               ++     +         
Sbjct: 236 NGKRALFELRKVPFYNRNGRRLGLMGFG--RDITERKKYEDALEKASSDKTSFISTISHE 293

Query: 215 SSV 217
              
Sbjct: 294 LRT 296


>gi|126661095|ref|ZP_01732177.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp.
           CCY0110]
 gi|126617639|gb|EAZ88426.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp.
           CCY0110]
          Length = 828

 Score =  316 bits (810), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 106/656 (16%), Positives = 212/656 (32%), Gaps = 50/656 (7%)

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP-----PHLRMKNK 239
             NR         +  + K   L        S+  ++  +              L    +
Sbjct: 190 RNNRSRQQAEREKEASENKLQALLTYSSDIVSIFDKEGKLIYNSPTAEKIYGFSLEEMQQ 249

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ---NNS 296
           + +    +      +      LL   +  +  Q  + T +      +          N  
Sbjct: 250 MRTFDLIHPDDRARVGNSFSQLLDHPQEIITVQYRYQTKSNEYIWIETVASNQLHNPNIK 309

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-------HGNLFYANPSFL 349
                  +            E E    +  +     F++         + NL YA+P+  
Sbjct: 310 GIVANSRNISERKQAEKALRESEQKFRQIAENIREVFWIIDISKTDPSYQNLTYASPTCK 369

Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
            +  Y      E        +               L   +        +   I+ +   
Sbjct: 370 KIWGYSPDYMYENPTKWIESIHPDDRDRIKRDFWQKLLEGE-----FDYQYRIIRSDG-T 423

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI-----------EVMQLCSIL 458
              +    F   NQ  + +   G+  +  + +  +++++               +L  +L
Sbjct: 424 QRWIRDRGFTIQNQSGDLVRVAGLAQDITEQKKREQEIKRLNEQLEERVSQRTAELEMLL 483

Query: 459 EATSDGIAIINRE-GIILSTNRAVSKLFGYPVE-DILRKPFTVFLEQNTPSVMNHYLTEI 516
               D + ++  E   +L  N+  +K  G+     +  K                   ++
Sbjct: 484 NTLPDFVFVVEPETMKLLFCNQVFAKGIGFDHHKQVQGKTIFDCFNPEIADYFAQQNQQV 543

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY--SLTMHDISEWKQEKNKLSHA 574
                   LE+I      +        +  K      Y    T  D++E  + K  L   
Sbjct: 544 FDSGETLHLEEIITLPDGD-HYFDTYKVPLKNSHGEVYALLATSRDVTELVKTKQVLIEQ 602

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF--GPLGNPRYIEYANYIDR 632
               E  +     F   VSH++R PL  I GF   +K + F      +P+ I Y + I++
Sbjct: 603 TTQLEATNQELDSFCYSVSHDLRAPLRHIHGFVNALKPRLFNSDVKDDPKVIHYLDVIEK 662

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
           S   +  +++ LL +S++  G+  L F  V+L+  V  AI LV      + I I      
Sbjct: 663 SSQKMGRLIDGLLTLSRV--GRRELVFHEVNLNAVVKTAIDLVC----SEGINIEFKI-G 715

Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752
            +P +L D   ++Q+ +N++ N++ F+     I I      +    L V D GVG     
Sbjct: 716 QLPTVLGDSALLQQVFINLIQNSVKFSQGQNPIQIEVDCLEDG--TLFVADNGVGFDMKY 773

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            E+    F ++ +  Q   EGTG+GL + + ++  + G+ +  S   +G       
Sbjct: 774 AEQLFGAFQRLHS--QKEFEGTGIGLSIVQRIIHRHGGRIWARSGVGEGATFYFKL 827



 Score = 68.1 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 56/450 (12%), Positives = 105/450 (23%), Gaps = 59/450 (13%)

Query: 38  KSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKE 97
           K+ + N      E+     +N+     T   D  + F               D  G L  
Sbjct: 187 KAYRNNRSRQQAEREKEASENKLQALLTYSSDIVSIF---------------DKEGKLIY 231

Query: 98  ISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN-HIGDLLKRQNTWYGKTTLWPIEGTN 156
            S    K  G    +M  MR  D+               LL            +  + +N
Sbjct: 232 NSPTAEKIYGFSLEEMQQMRTFDLIHPDDRARVGNSFSQLLDHPQEIITVQYRYQTK-SN 290

Query: 157 LYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSS 216
            Y+ I+  A      N    G                    +  ++KF  + E  +    
Sbjct: 291 EYIWIETVASNQL-HNPNIKGI--VANSRNISERKQAEKALRESEQKFRQIAENIREVFW 347

Query: 217 V-----EKEKYDIFSQQSPP--------PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
           +         Y   +  SP         P    +N    +   +    D +K + +  L 
Sbjct: 348 IIDISKTDPSYQNLTYASPTCKKIWGYSPDYMYENPTKWIESIHPDDRDRIKRDFWQKLL 407

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
             E     Q      +  Q   +    T+QN S +           +     ++      
Sbjct: 408 EGE--FDYQYRIIRSDGTQRWIRDRGFTIQNQSGDLVRVAGLAQDITEQKKREQEIKRLN 465

Query: 324 E---------------TVDKCPIPFFVYSHGN--LFYANPSFLLLTKYKSVDDIEIAGGL 366
           E                ++  P   FV       L + N  F     +     ++     
Sbjct: 466 EQLEERVSQRTAELEMLLNTLPDFVFVVEPETMKLLFCNQVFAKGIGFDHHKQVQGKTIF 525

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
                          + V         +     +     +               N   E
Sbjct: 526 DCFNPEIADYFAQQNQQVF---DSGETLHLEEIITLPDGD----HYFDTYKVPLKNSHGE 578

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
                    +  +    K+ +  +  QL +
Sbjct: 579 VYALLATSRDVTELVKTKQVLIEQTTQLEA 608


>gi|116695482|ref|YP_841058.1| signal transduction histidine kinase [Ralstonia eutropha H16]
 gi|113529981|emb|CAJ96328.1| signal transduction histidine kinase containing a receiver domain
           (hybrid) and PAS sensor domains [Ralstonia eutropha H16]
          Length = 664

 Score =  316 bits (810), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 97/540 (17%), Positives = 191/540 (35%), Gaps = 20/540 (3%)

Query: 283 YTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI-PFFVYS-HGN 340
            T+          S    +        S     D  +      VD       F     G+
Sbjct: 1   MTRPPEDPQQPAGSVPRPDAGEPSGGRSQEIRADLPDVPYQTLVDSVQDYAIFTLDVGGH 60

Query: 341 LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400
           +   N     +  Y   + +      S       ++ +     +                
Sbjct: 61  VSSWNKGAARIKGYAREEILGK--HFSQFYTPDAIARSWPQAELKAAAEQGR---FEDEG 115

Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
             ++ +     A   +     +     +    +  +  + R     +      L  ++E 
Sbjct: 116 WRVRKDGSRFWA-NVVITALKDAEGRLIGFAKVTRDMTERRRAAEALHQSEETLRLLVEG 174

Query: 461 TSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL 519
             D  I +++  G I+S N   S + GY  ++I+ + F+VF  Q   +         L+ 
Sbjct: 175 VKDYAIFMLDPGGHIVSWNSGASYIKGYRRDEIIGRHFSVFYPQEDVAAGKPSRHLALAQ 234

Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579
            + +  E       K+  L    + +  +   S        ++    E+ +    ++ ++
Sbjct: 235 RVGRV-EDEGWRVRKDGSLFWANVTLTAVYDESRTLRGFAKVTRDMSERRRREELERSSQ 293

Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639
           + +    +FLA +SHE+R PL  +      +   R  P            I+R    +  
Sbjct: 294 RMN----EFLATLSHELRNPLAPVHSALAAM---RLAPEDAVLANRSLAMIERQVTHLSR 346

Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA 699
           +V+DLLDI +I SG++ L  EPV  +E ++  +   Q   + K   +          + A
Sbjct: 347 LVDDLLDIGRITSGRIELRMEPVEFNEIIALGVEAAQPALDAKSQCVEVRTHAGSIPMRA 406

Query: 700 DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKP 759
           D   + Q+  N++ NA  F+P G  + I+TT   N  + ++V D G G+    +++    
Sbjct: 407 DKTRLVQVMQNLVLNASKFSPPGSSVTIATTIQ-NRTLQVQVMDQGCGIGPQAIDEIFNL 465

Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFPLYDTSHPHD 818
           F Q          G G+GL L +++V+ + G     S    +G+   +  PL   SH  D
Sbjct: 466 FMQESRPGTDLHGGLGIGLSLCRSLVELHGGTISAASAGAGQGSTFTLRLPL-TASHKED 524



 Score = 68.5 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 37/416 (8%), Positives = 99/416 (23%), Gaps = 25/416 (6%)

Query: 49  FEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRF-----------TWNIDAHGYLKE 97
             +            +        +         V +            + +D  G++  
Sbjct: 4   PPEDPQQPAGSVPRPDAGEPSGGRSQEIRADLPDVPYQTLVDSVQDYAIFTLDVGGHVSS 63

Query: 98  ISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNL 157
            ++   +  G    +++G           I  +    +L         +   W +     
Sbjct: 64  WNKGAARIKGYAREEILGKHFSQFYTPDAIARSWPQAELKAAAEQGRFEDEGWRVRKDGS 123

Query: 158 YVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHS-S 216
               ++    +        GF    +               + ++    L E  K ++  
Sbjct: 124 RFWANVVITALKDAEGRLIGFAK--VTRDMTERRRAAEALHQSEETLRLLVEGVKDYAIF 181

Query: 217 VEKEKYDIFSQQSPP----PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ 272
           +      I S  S       + R +      + +Y  +D         L  ++     E 
Sbjct: 182 MLDPGGHIVSWNSGASYIKGYRRDEIIGRHFSVFYPQEDVAAGKPSRHLALAQRVGRVED 241

Query: 273 EDFH-TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI 331
           E +    + + +        + + S+    +       S     +E E  +    +    
Sbjct: 242 EGWRVRKDGSLFWANVTLTAVYDESRTLRGFAKVTRDMSERRRREELERSSQRMNEFL-- 299

Query: 332 PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR 391
               +   N      S L   +    D +      +  L   +    +  + V       
Sbjct: 300 ATLSHELRNPLAPVHSALAAMRLAPEDAVL----ANRSLAMIERQVTHLSRLVDDLLDIG 355

Query: 392 TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
              +    L          +A+     + A        +       +  R +K ++
Sbjct: 356 RITSGRIELRMEPVEFNEIIALGVEAAQPALDAKSQCVEVRTHAGSIPMRADKTRL 411



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/245 (10%), Positives = 67/245 (27%), Gaps = 9/245 (3%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID---PNNHIGDLLKRQNT 142
            + +D  G++   +       G    ++IG           +    P+ H+    +R   
Sbjct: 180 IFMLDPGGHIVSWNSGASYIKGYRRDEIIGRHFSVFYPQEDVAAGKPSRHLALA-QRVGR 238

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
              +      +G+  +  + L A  +Y  +R   GF    +            L +   +
Sbjct: 239 VEDEGWRVRKDGSLFWANVTLTA--VYDESRTLRGFAK--VTRDMSERRRREELERSSQR 294

Query: 203 KFSHLHEIKKGHS-SVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
               L  +       +      + + +  P    + N+  ++ E        L  +   +
Sbjct: 295 MNEFLATLSHELRNPLAPVHSALAAMRLAPEDAVLANRSLAMIERQVTHLSRLVDDLLDI 354

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
                  +  + +    N       +      +   +  E  +H     + A       +
Sbjct: 355 GRITSGRIELRMEPVEFNEIIALGVEAAQPALDAKSQCVEVRTHAGSIPMRADKTRLVQV 414

Query: 322 TPETV 326
               V
Sbjct: 415 MQNLV 419


>gi|255029104|ref|ZP_05301055.1| two-component sensor histidine kinase [Listeria monocytogenes LO28]
          Length = 581

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 84/369 (22%), Positives = 173/369 (46%), Gaps = 31/369 (8%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           +++    +L +I++    G+ +IN +  ++ TNR + ++ G    +I  KPF   ++   
Sbjct: 227 EIKQNEQRLNAIVQNLVSGVMLINVDKQVIMTNRTMYQILG--ETEITGKPFYEVIKSFA 284

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISE 563
            S +        + + +   +K  +     E +L   +              L +HDI++
Sbjct: 285 LSQLIEA-----TFETKTIQQKEIILYFPREMILDASVSPILGENGEITGIILLLHDITQ 339

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            +  +N               +S+F+  VSHE++TP+TA+ GF+E + +   G + +   
Sbjct: 340 IRHLENV--------------RSEFVTNVSHELKTPVTALKGFAETLLD---GAMYDEML 382

Query: 624 -IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             ++   I    + +  ++ D+L +S+IE   +  + E V +DE + ++   +   A EK
Sbjct: 383 LKKFLTIIKEESDRLHRLIMDILALSRIEQNPVPENVELVEVDEVIEQSARTIFEMATEK 442

Query: 683 RILIRTSFANNIPRI--LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
            I +       IP +    D   ++QI +N+LSNAI++TP  G++ +        EVI+ 
Sbjct: 443 NIQVII-PEKTIPSVTIETDRDKLQQILINLLSNAINYTPVDGKVEVKL-IEQEAEVIIE 500

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V D G+G+   ++++  + F ++  ++     GTGLGL + K +V+   G+  + S    
Sbjct: 501 VTDNGIGIPAKDIDRVFERFYRVDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEV 560

Query: 801 GTLIEIIFP 809
           G+   +  P
Sbjct: 561 GSTFRVTLP 569


>gi|148979754|ref|ZP_01815691.1| aerobic respiration control sensor protein ArcB [Vibrionales
           bacterium SWAT-3]
 gi|145961637|gb|EDK26936.1| aerobic respiration control sensor protein ArcB [Vibrionales
           bacterium SWAT-3]
          Length = 783

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 87/392 (22%), Positives = 169/392 (43%), Gaps = 19/392 (4%)

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
            +E E       + ++      L S ++A+ D I   N +G+    NRAV +L G   +D
Sbjct: 135 DLENEVFQRERTQLELAERTALLRSFIDASPDLIYYRNEDGVFSGCNRAVEELTGKTEKD 194

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
           ++         +     +     ++ + +   T ++        +    LR +       
Sbjct: 195 LVGLTPWDVYSKEIAQQVVETDKKVFADNQALTYDQWLEYPDGRKSYFELRKVPFYSKDG 254

Query: 552 S--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                     DI+E K+        ++  EK S  K+ F++ +SHE+RTPL  IIG S +
Sbjct: 255 RHLGLVGFGRDITERKE-------HQESIEKASRDKTTFISTISHELRTPLNGIIGLSRM 307

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           + + +          +    I  S   + +I ND++D+ K +  K+ L   P++ ++ V 
Sbjct: 308 LLDSQLTT----EQRKQMQTIKVSAVTLGNIFNDIIDMDKFDRRKLELFPTPINFEDFVV 363

Query: 670 EAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQI-II 727
           E  S+  L A +K +       +++P  +  D   ++Q+  N++SNA+ FT  GG +  +
Sbjct: 364 EIESISALMAEQKGLRFDLERLSDLPVAVEVDGTRLRQVLWNLVSNAMKFTKDGGVVMTV 423

Query: 728 STTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGEGTGLGLPLAKAMV 785
           S     +   + + V DTG+G+   ELEK    + Q+ +        GTG+GL ++K ++
Sbjct: 424 SADIDGDFANITMEVEDTGIGIPESELEKIFAMYYQVKSGTDNLHAVGTGIGLAVSKQLI 483

Query: 786 DANMGKFYIFSTPAKGTLIEIIF--PLYDTSH 815
           +   G   + S    G+   +    P+   + 
Sbjct: 484 NMMDGDIEVTSEEGFGSTFTVSIRVPVNHDTQ 515



 Score = 43.1 bits (100), Expect = 0.19,   Method: Composition-based stats.
 Identities = 16/127 (12%), Positives = 34/127 (26%), Gaps = 5/127 (3%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTWYGKTTLW 150
            G     +  + +  G     ++G+   DV               +            L 
Sbjct: 174 DGVFSGCNRAVEELTGKTEKDLVGLTPWDVYSKEIAQQVVETDKKVFADNQALTYDQWLE 233

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
             +G   Y   +L  +P YS++    G  GFG         + +   ++  +  +     
Sbjct: 234 YPDGRKSYF--ELRKVPFYSKDGRHLGLVGFG--RDITERKEHQESIEKASRDKTTFIST 289

Query: 211 KKGHSSV 217
                  
Sbjct: 290 ISHELRT 296


>gi|221211839|ref|ZP_03584817.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
           CGD1]
 gi|221167924|gb|EEE00393.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
           CGD1]
          Length = 767

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 104/618 (16%), Positives = 207/618 (33%), Gaps = 30/618 (4%)

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
               +    ++V +     F   + P  +      +           +       L+ + 
Sbjct: 13  ATAVMFVAIATVLQALAIRFGGANMPLAVYYPLLAAIAWATSFLFGLIATLASSVLVWTL 72

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
             S P               +     +   +  +    +   +         G       
Sbjct: 73  FLSDPAAYAMSLSERLVRLGEFALIGVLACAVVAAVRHARVTNERARRREAAGRAQFEAL 132

Query: 326 VDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
           ++  P         G L Y N +   L   +  D    AG     +      D   ++  
Sbjct: 133 LNALPDGVIAADTNGRLTYVNAAAAALLGCRPDDA---AGRALRDVLQLTDRDGRRVQTS 189

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
            L  +       +   H ++      + +       A+          +  +    R   
Sbjct: 190 ALEHALGGTRT-TCERHWLRAAGGEPVPVAETAAPIADADGNVDGAVLLLRDASADRARA 248

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
               +    + +    + D +  I+R+  I+S N A  ++FGY  E    + F   +   
Sbjct: 249 DAARVRRAVVDA----SPDALIGIDRDARIVSWNPAAQRIFGYDEEAAYGRRFDSLIAM- 303

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564
              +  H L +              L   ++       +  + +   +   + +  I+  
Sbjct: 304 -RWLKRHPLVQTFDHLREIVGPADLLCVRRDGGRFRATVAARPVRGEARDGVALS-ITLR 361

Query: 565 K------------QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
           +            +       A + A   +  K + LA VSHE+RTPL  I G+ EV++N
Sbjct: 362 ETGAQRRQDRRTQRSLRSARDAGEQAATSNRLKDELLATVSHELRTPLNVIYGWIEVLRN 421

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
                L     ++  + IDRS   +  +V D+LD S + +GK+ L   PV +    ++ +
Sbjct: 422 SGDDAL----RVQAIDAIDRSARSLTRMVGDILDASSLSTGKLRLDTMPVDVVRLFADVV 477

Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
           +     A+   I +          +  D   ++Q+  N++SNA+ FTP+GG + +S  H 
Sbjct: 478 AAFPTAASSAGIALEFESRVATCIVSGDAERLRQMLSNLVSNALKFTPAGGDVTVSVAH- 536

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
            +   +L V DTG G+    +      F +  +S      G GLGL + + +V  + G  
Sbjct: 537 DDTHAVLTVTDTGQGIAPEFVPHVFDMFRRADDSPASSRRGLGLGLSIVRHIVQLHGGTV 596

Query: 793 YIFST-PAKGTLIEIIFP 809
            + S    +GT   +  P
Sbjct: 597 VVDSAGRNRGTTFTVKLP 614



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/260 (13%), Positives = 65/260 (25%), Gaps = 21/260 (8%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR--QNTWYGKT 147
           D +G L  ++      +G       G  L DV  +   D        L+     T     
Sbjct: 144 DTNGRLTYVNAAAAALLGCRPDDAAGRALRDVLQLTDRDGRRVQTSALEHALGGTRTTCE 203

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
             W        VP+   A PI   +    G                 A  +R     S  
Sbjct: 204 RHWLRAAGGEPVPVAETAAPIADADGNVDGAVLLLRDASADRARADAARVRRAVVDASPD 263

Query: 208 H----EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK------------- 250
                +      S       IF       + R  + + ++     H              
Sbjct: 264 ALIGIDRDARIVSWNPAAQRIFGYDEEAAYGRRFDSLIAMRWLKRHPLVQTFDHLREIVG 323

Query: 251 --DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
             D +          +  ++ P + +         T ++     + + +      S R+ 
Sbjct: 324 PADLLCVRRDGGRFRATVAARPVRGEARDGVALSITLRETGAQRRQDRRTQRSLRSARDA 383

Query: 309 PSLSAYFDEGENLTPETVDK 328
              +A  +  ++    TV  
Sbjct: 384 GEQAATSNRLKDELLATVSH 403



 Score = 54.6 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 27/226 (11%), Positives = 62/226 (27%), Gaps = 6/226 (2%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID    +   +    +  G       G R   +  +  +  +  +      +    G   
Sbjct: 268 IDRDARIVSWNPAAQRIFGYDEEAAYGRRFDSLIAMRWLKRHPLVQTFDHLREIV-GPAD 326

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           L  +          +AA P+    R+     G  +    R     R   +R  +      
Sbjct: 327 LLCVRRDGGRFRATVAARPVRGEARD-----GVALSITLRETGAQRRQDRRTQRSLRSAR 381

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           +  +  ++  + K ++ +  S      +      +       DD L+ +    +     S
Sbjct: 382 DAGEQAATSNRLKDELLATVSHELRTPLNVIYGWIEVLRNSGDDALRVQAIDAIDRSARS 441

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
           L           +  T K    T+  +    F  +      + S+ 
Sbjct: 442 LTRMVGDILDASSLSTGKLRLDTMPVDVVRLFADVVAAFPTAASSA 487


>gi|314933845|ref|ZP_07841210.1| sensory box histidine kinase PhoR [Staphylococcus caprae C87]
 gi|313653995|gb|EFS17752.1| sensory box histidine kinase PhoR [Staphylococcus caprae C87]
          Length = 565

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 82/397 (20%), Positives = 176/397 (44%), Gaps = 31/397 (7%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRK--MEIEVMQLCSILEATSDGIAIINREGIIL 475
                   +      +   ++  R+ K     +I+  +L + LE     + +I++ G I+
Sbjct: 191 VRVPESNVKETRALFVTTNELARRLQKLNNSQKIQSNRLKTTLENIPSSVLMIDKHGEIV 250

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
             N A  ++F  P + +  K +  F++ +   ++          +     +     +   
Sbjct: 251 VANHAYYEVFS-PDQQVENKNYIGFIDDSIEKLIIESFR----TEKVIYDQIEVDINNVH 305

Query: 536 EKLLSLRIIIKKLPFS---SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
            K   +  +              + +HDI+  ++ +              + + +F+A V
Sbjct: 306 TKYFDVSCVPILSKSKKKLQGMVVVLHDITNLQKLE--------------NLRREFVANV 351

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIE 651
           SHE++TP+T+I GF+E +     G   + + ++ + N I +  N +  +V DLLD+S IE
Sbjct: 352 SHELKTPITSIKGFAETLIE---GAKNDEQSLDMFLNIILKESNRIESLVMDLLDLSHIE 408

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
             +  +    ++L E     I  +Q  A  K I I+     ++  I A    + Q+  N+
Sbjct: 409 -QQTEIETNYMNLSELAYNTIDNLQTQAINKNIEIQPEIEKDVI-IEAHENKIAQVITNL 466

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           LSNAI+++    ++I+       ++V L ++D G+G++  + +   + F ++  ++    
Sbjct: 467 LSNAINYSLEDNKVIVRV-FREGKKVNLEIQDFGIGISVKDQKHIFERFYRVDKARSRDS 525

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            GTGLGL + K +V+A+ G+  I S   +G+  ++ F
Sbjct: 526 GGTGLGLSITKHIVEAHNGRININSRLGEGSTFKVTF 562


>gi|307591953|ref|YP_003899544.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7822]
 gi|306985598|gb|ADN17478.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7822]
          Length = 1846

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 105/797 (13%), Positives = 235/797 (29%), Gaps = 90/797 (11%)

Query: 92   HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151
                 E +    +  G       G  + ++             ++ +             
Sbjct: 644  DFRYIETNLGFERQSGRRPQP--GQTMQELFPEAEDMWLKDYAEVARTGQPKRFIDFH-- 699

Query: 152  IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
                +L    D+   P  +   + +      +      +    A  +   ++      I+
Sbjct: 700  ---EDLDRWFDVFVFPTSNNKNQLA-----ALFSDVTDEKRSEAALRESQERLQKALSIE 751

Query: 212  KGHSSVEKEKYDIFSQQSPPP-----HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
                        I             +      ++   +    +   + +     L +  
Sbjct: 752  TVGVLFFMLDGQITDANDTFLRMSGYNRDEARHIAHWKDLTPPEFWDVTSAAAEELATLG 811

Query: 267  SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY---LSHRNHPSLSAYFDEGENLTP 323
             + P ++     + +++        L+ + + +      +   +         E +    
Sbjct: 812  KTAPYEKQHIRKDGSRWWGLFSPTRLKGSGRNAECVEFVIDISDRKRAEETLRESKERQA 871

Query: 324  ETVDKC----PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD-------- 371
              +       P+   V     +      +  + +    +       L    D        
Sbjct: 872  FLLQLSDAIRPLTDPVEIMATVSETVRHYYKVARCGYSEVSPPYDHLVVARDCTNGIMQN 931

Query: 372  -APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS-------------------- 410
                    +    ++        +         +   + +                    
Sbjct: 932  LQGAWPLVSFGDDLIRQYRSGQTVVVEDAFEDARSKGKEADLESAGNIRSSISVQLIKQG 991

Query: 411  ---LAMTFIPFEKANQFPENMPQNGIEPEDV----DTRINKRKMEIEVMQLCSILEATSD 463
                +       + +     +       E      +    +  +     +  S+ E+ +D
Sbjct: 992  NWVASFYVQDTVRRSWTGNEVNLMEEIAERTWSALERARTEAALRESEEKYRSLFESIND 1051

Query: 464  GIAII----NREG-----IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
            G A++    + +        L  + +     G     +  K     +         HY  
Sbjct: 1052 GFALLEVLYDDDDKPLDCRFLEVSPSFETQTGLT--QVQGKTLRELIPSVESGWFEHYHQ 1109

Query: 515  EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA 574
             +++  L        +     +    + +     P     ++   +I+E KQ + +    
Sbjct: 1110 ALVTNALVHFE----MWQDYLKTWFEVDVFPYGNPQDRKVTIVFQNINEHKQAEAERLQL 1165

Query: 575  KKIAEKESSH-------------KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
             +                     K+ F + VSHE RTPLT  +   + I +    PL +P
Sbjct: 1166 IQEQAAREQERQRAETLAELDRVKTLFFSNVSHEFRTPLTLSLAPLQDILSDPTHPL-DP 1224

Query: 622  RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
               E    + R+   +L +VN LLD S+IE+G++   +EP  L    +E  S+ +     
Sbjct: 1225 VQGERLELVHRNNLRLLKLVNTLLDFSRIEAGRIEAVYEPTDLAMFTTELTSVFRSAIER 1284

Query: 682  KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
              + +          +  D +  ++I LN+LSNA  FT  G +I +S  + ++   IL++
Sbjct: 1285 ADLQLIVDCPPLPEPVFVDRQMWEKIVLNLLSNAFKFTFKG-EIRVSLANNNDNCAILQI 1343

Query: 742  RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            +DTG G+    L    + F Q+   Q    EG+G+GL L   +V  + G   + ST  +G
Sbjct: 1344 QDTGTGIAPEHLPHLFERFYQVRGIQARTHEGSGIGLALVYELVRLHSGSIEVNSTLGEG 1403

Query: 802  TLIEIIFPLYDTSHPHD 818
            T   I  P      P D
Sbjct: 1404 TCFTISLPFGTEHLPSD 1420



 Score =  246 bits (628), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 122/801 (15%), Positives = 235/801 (29%), Gaps = 107/801 (13%)

Query: 94   YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIE 153
               E+S       G     + G  L ++   +      H    L      + +       
Sbjct: 1070 RFLEVSPSFETQTGLTQ--VQGKTLRELIPSVESGWFEHYHQALVTNALVHFEMWQ---- 1123

Query: 154  GTNLYVPIDLAALPIYS-RNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212
               L    ++   P  + ++R+ +      +           A   +L ++ +     ++
Sbjct: 1124 -DYLKTWFEVDVFPYGNPQDRKVT-----IVFQNINEHKQAEAERLQLIQEQAA----RE 1173

Query: 213  GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ 272
                  +   ++   ++           + LT   A   D+L    +PL   +   L  +
Sbjct: 1174 QERQRAETLAELDRVKTLFFSNVSHEFRTPLTLSLAPLQDILSDPTHPLDPVQGERL--E 1231

Query: 273  EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK---- 328
                                +  +          +    +           E  D     
Sbjct: 1232 LVHRNNLRLLKLVNTLLDFSRIEAGRIEAVYEPTDLAMFTTELTSVFRSAIERADLQLIV 1291

Query: 329  ----CPIPFFVYS-------------------HGNLFYA------NPSFLLLTKYKSVDD 359
                 P P FV                      G +  +      N + L +    +   
Sbjct: 1292 DCPPLPEPVFVDRQMWEKIVLNLLSNAFKFTFKGEIRVSLANNNDNCAILQIQDTGTGIA 1351

Query: 360  IEIAGGLSTLLDA--------PKLSDNNAIKPVMLYRSDRTCIAA-----SARLHTIQWN 406
             E    L               + S         L R     I            TI   
Sbjct: 1352 PEHLPHLFERFYQVRGIQARTHEGSGIGLALVYELVRLHSGSIEVNSTLGEGTCFTISLP 1411

Query: 407  RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD--- 463
                   +    ++++  P     +            +R +  +  +    LE + +   
Sbjct: 1412 FGTEHLPSDRLLDESDDQPVRPLASTTIDSVAYRLEAERWLPKDTNEEQD-LECSQEVSL 1470

Query: 464  -----GIAIINREGIIL-STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
                  + +++    +     R +S+ F         K       +  P ++   +    
Sbjct: 1471 TPSSFLVLLVDDNADMRKYLTRILSEHFQVEAV-ADGKTALAVAIEQVPDLILSDVMMPR 1529

Query: 518  SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD--------------ISE 563
               +       +   TKE   + L     +            D              ++ 
Sbjct: 1530 LDGVELLQALRSDPRTKEVPFILLSARAGEESIIKGLEAGADDYLIKPFSAQELVSRVNA 1589

Query: 564  WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
              Q       A       S  K + L+ VSHE+ TPL AI+G++ ++   R  P   P  
Sbjct: 1590 HLQMAKLRGEALDHERMISRRKDELLSTVSHELNTPLVAILGWTRLL---RGTPPSQPML 1646

Query: 624  IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
             +    I+R+  L   ++ DLLDIS+I + K+ L  EPV +   +  AIS V   A+ K 
Sbjct: 1647 TKALETIERNAALQAKLIQDLLDISRINADKLLLSLEPVEIGSLIDIAISTVAPLASTKG 1706

Query: 684  ILIRT-----SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH------T 732
            I +           +   +  D   + Q+  N+L+NAI FTP  G++ +  +        
Sbjct: 1707 IDLIWHKTNEDGDASSVVVKGDPERLVQVMGNLLTNAIKFTPPSGRVSVELSVMRDDNFA 1766

Query: 733  SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
                  + V DTG+G+    L    + F Q         +G GLGL +++ ++  + G  
Sbjct: 1767 DGGYAKISVIDTGIGIAAEFLPYVFERFRQGEG--TNGVKGLGLGLAISRHLIQLHQGSI 1824

Query: 793  YIFST-PAKGTLIEIIFPLYD 812
            Y+ S    KG    I  P+  
Sbjct: 1825 YVQSQGIGKGATFVIELPINQ 1845



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 37/325 (11%), Positives = 91/325 (28%), Gaps = 34/325 (10%)

Query: 277 TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD----EGENLTPETVDKCP-- 330
           + +  ++   +    + + +  +   L  +              E E  +   +   P  
Sbjct: 158 SQDEPRHFDLEDVRVMTSLADFTATALLLQQRQKRELLVANAALEAEARSRALISNLPGG 217

Query: 331 IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390
             F V  +     A    L    +K  D +       T+ +        + +P+      
Sbjct: 218 AAFVVDQNLRYMLAEGEALETAGFKPEDFVGH-----TIFEVLSSELVASYEPMYRQALA 272

Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450
                     H   +                 +  E      +  +  + +  +  +   
Sbjct: 273 GKPFEYEHSSHDRTY--------ISRGTPIRAENGEIYGALAVSYDITERKRTEATLREN 324

Query: 451 VMQLCSILEATSDGIAII----NREGI-----ILSTNRAVSKLFGYPVEDILRKPFTVFL 501
             +  ++  +  +  A++    +  G       L  N A  K  G  +E  + +  T  L
Sbjct: 325 EEKYRALFVSMDEAYAVVEVLADDNGQWNDFLFLEVNPAFVKQTG--MEYPVGRKATELL 382

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDI 561
               P     Y     + +  +  E     +    ++  L +       S   ++   DI
Sbjct: 383 GTPNPKWAQVYGRVAETGEPIRFEESEATLN----RVFDLYVFRLGPDGSRRVAVLFTDI 438

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKS 586
           S+ K+ +   +   +IA+  S   S
Sbjct: 439 SDHKRREANAAFLAEIAQDFSRLSS 463



 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/211 (9%), Positives = 56/211 (26%), Gaps = 10/211 (4%)

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
            L             +  I  +      +  +    +            + +  +  +  
Sbjct: 139 RLVLPLVADRHVFGTIWIISQDEPRHFDLEDVRVMTSLADFTATALLLQQRQKRELLVAN 198

Query: 445 RKMEIEVMQLCSILEATSDGI-AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
             +E E  +  +++     G   ++++    +       +  G+  ED +       L  
Sbjct: 199 AALEAE-ARSRALISNLPGGAAFVVDQNLRYMLAEGEALETAGFKPEDFVGHTIFEVLSS 257

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDI 561
              +       + L+             S+ +   +S R    +             +DI
Sbjct: 258 ELVASYEPMYRQALAGKP-----FEYEHSSHDRTYIS-RGTPIRAENGEIYGALAVSYDI 311

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
           +E K+ +  L   ++          +  A V
Sbjct: 312 TERKRTEATLRENEEKYRALFVSMDEAYAVV 342


>gi|34496645|ref|NP_900860.1| sensor/response regulator hybrid [Chromobacterium violaceum ATCC
           12472]
 gi|34330304|gb|AAQ58865.2| probable sensor/response regulator hybrid [Chromobacterium
           violaceum ATCC 12472]
          Length = 1105

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 93/578 (16%), Positives = 198/578 (34%), Gaps = 32/578 (5%)

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
                 + T+   +L        +        Q      +                 +  
Sbjct: 48  SVVANAVDTARRDTLLAMCVGGLLVAALAWIHQRQRNRLHERIRQMNASLESQVRQGTQE 107

Query: 315 FDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD-- 371
                 L    ++            G +   NP+   L   ++ + +        L    
Sbjct: 108 VRRYAALQRAILNDASYAIVATDQTGLVTLFNPAAETLLAERADEVVGRRRLTDWLDASE 167

Query: 372 ----------APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                        L    A + ++    D         L     +    + ++       
Sbjct: 168 LERRSLQRAEDSHLPPKEAFETLVSRTRDGQASQQEWTLTA---SDGRRIPVSIAMTALR 224

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
               E      +  +    +  +R++     QL +  +    GI I       L  N  +
Sbjct: 225 GDDGELQGFLAMAADISAQQQYQRELMSARDQLATAADVAELGIWIWQLADNALEWNARM 284

Query: 482 SKLFGYPV----EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
             ++  P     E +  + +   +  +    +   L + ++           +      +
Sbjct: 285 FDIYQLPEALGKEGLNYRHWRDRVHPDDADEVERLLNDAVAGRGVYAPTFRIVLPDGRIR 344

Query: 538 LLSLRIIIKKLPFSSCYSL--TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
            +    +++    +  Y +     DI+     +  L  +K+ AE  S  K++FL+ +SHE
Sbjct: 345 HIQAAALVEFDDDNRPYRVTGINRDITIQHDIETALRESKENAEAASRAKANFLSNMSHE 404

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           IRTP+ A++G +  +  +   P      ++  + I  +G  +  I+ND+LD SKIE+G +
Sbjct: 405 IRTPMNAVLGLA-YLLEKHGLP---AEALDLVHKIRVAGRSLQAIINDILDFSKIEAGNL 460

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN-NIPRILADLRSVKQIALNILSN 714
            +      L + +    +++      + I +  +    +I  +  D   ++Q+ +N+ SN
Sbjct: 461 EIEQASFRLADVLDNLSTIMSASVGNRDIELIIAPPPQDIDYLRGDALRLEQVLINLTSN 520

Query: 715 AIHFTPSGGQIIISTTHTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           AI FT  G  + +S            +   V DTG+G+   +  +  +PF Q   S   R
Sbjct: 521 AIKFTEHG-HVKVSIQPLEASPSQVRLRFAVEDTGIGIPKPKQRELFRPFTQADASTTRR 579

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
             GTGLGL +++ +V    G+  ++S P +G+      
Sbjct: 580 FGGTGLGLAISQRLVALMGGEIGLYSEPGQGSAFWFTL 617



 Score = 45.0 bits (105), Expect = 0.046,   Method: Composition-based stats.
 Identities = 21/267 (7%), Positives = 67/267 (25%), Gaps = 25/267 (9%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMR----LCDVSDIL----------HIDPNNHIG 134
            D  G +   +      +   A +++G R      D S++           H+ P     
Sbjct: 129 TDQTGLVTLFNPAAETLLAERADEVVGRRRLTDWLDASELERRSLQRAEDSHLPPKEAFE 188

Query: 135 DLLKRQNTWYGKTTLWPIEGTN-LYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193
            L+ R          W +  ++   +P+ +A   +   + E  GF    +          
Sbjct: 189 TLVSRTRDGQASQQEWTLTASDGRRIPVSIAMTALRGDDGELQGF--LAMAADISAQQQY 246

Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL-RMKNKVSSLTEYYAHKDD 252
           +        + +   ++ +    + +   +     +    + ++   +      Y H  D
Sbjct: 247 QRELMSARDQLATAADVAELGIWIWQLADNALEWNARMFDIYQLPEALGKEGLNYRHWRD 306

Query: 253 VLKTEKYP-------LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
            +  +             +              +      +       ++    +     
Sbjct: 307 RVHPDDADEVERLLNDAVAGRGVYAPTFRIVLPDGRIRHIQAAALVEFDDDNRPYRVTGI 366

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIP 332
               ++    +     + E  +     
Sbjct: 367 NRDITIQHDIETALRESKENAEAASRA 393


>gi|291567853|dbj|BAI90125.1| two-component hybrid sensor and regulator [Arthrospira platensis
           NIES-39]
          Length = 1082

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 95/396 (23%), Positives = 182/396 (45%), Gaps = 32/396 (8%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           ++   +++  +  L SI++  +DG+ + + EG I  TN A++ LF     DI  K  +  
Sbjct: 468 KMATVELQETLANLTSIIDHIADGLLVTDAEGKITRTNPALANLFALGDLDIRGKLCSEA 527

Query: 501 LEQNTPSVMNHYLTEILSLDLRQT-LEKITLGSTKEEKLLSLRIIIKKLPF--SSCYSLT 557
              +  +++     + L     +  LE   +G    + +L                  + 
Sbjct: 528 FSGDVLNLLLQSKAQPLDAFQGEVKLEGDRIGQAVAKGVLKQVSSPSGSEELIYIGSVVL 587

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
             DI+  K+                  K+DF++ VSHE+RTPLT+++GF+++I+ +    
Sbjct: 588 FRDITAEKEI--------------DRMKTDFISTVSHELRTPLTSVLGFAKLIQKKLDDV 633

Query: 618 LGN-------------PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           +                +     + I   G  + +++ND+LDI+K+E+GK   H EP+S+
Sbjct: 634 ILPFIKTDDTKINRAVNQVASNVDIIVSEGIRLTNLINDVLDIAKMEAGKTEWHIEPLSI 693

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724
              V  AIS      N K I +  +  +N+P I+ D   + Q+ +N++SNA+ FT +G  
Sbjct: 694 KTVVERAISATTSLFNNKPIKLIVNMPDNLPDIMGDNDKLMQVFINLISNAVKFTETG-N 752

Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
           + +         + + V+DTG G+   + E+  + F Q+ N+   + +GTGLGLP+ + +
Sbjct: 753 VTLKL-MAVKSAIKVSVKDTGCGIDAADREQVFEKFKQVGNTLTNKPQGTGLGLPICQEI 811

Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820
           +  + G  ++ S    G+      PL D     + +
Sbjct: 812 IQHHGGSIWVESQVGVGSTFYFTLPLPDDQDIQNAV 847


>gi|270292777|ref|ZP_06198988.1| sensory box histidine kinase VicK [Streptococcus sp. M143]
 gi|270278756|gb|EFA24602.1| sensory box histidine kinase VicK [Streptococcus sp. M143]
          Length = 449

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 94/376 (25%), Positives = 169/376 (44%), Gaps = 33/376 (8%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           R+ +  +E E  +L SIL   +DG+   NR G I   N    K  G   E+ L K     
Sbjct: 83  RLTQENLEQETKRLNSILSYMTDGVLATNRRGQITMINDMAKKQLGIVKEEALNKSILEL 142

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SL 556
           L+      +   +T+I         E +        + LSLR+    +   S +      
Sbjct: 143 LKIEDEYELRDLITQIP--------ELMIDSQNANGEYLSLRVRFALIRRESGFISGLVA 194

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            +HD +E ++E+ +                 F++ VSHE+RTPLT++  + E +     G
Sbjct: 195 VLHDTTEQEKEERERRL--------------FVSNVSHELRTPLTSVKSYLEAL---DEG 237

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV- 675
            L +P   ++        N ++ +V DLL +S+I++    L  E ++    ++  ++   
Sbjct: 238 ALYDPVAPDFIKVSLDETNRMMRMVTDLLHLSRIDNATTRLDVELINFTAFITFILNRFD 297

Query: 676 --QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
             +    EK+  +   +  N   I  D   + Q+  NIL+NAI ++P GG+I +S   T 
Sbjct: 298 KMRSQDEEKKYELVRDYPINSVWIEIDTDKMTQVIDNILNNAIKYSPDGGKITVSMKTTD 357

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
           ++ + L ++D G+G+   +L K    F ++  ++     GTGLGL +AK ++  + G  +
Sbjct: 358 DQMI-LSIKDQGLGIPKQDLPKIFDRFYRVDRARSRAQGGTGLGLAIAKEIIKQHNGFIW 416

Query: 794 IFSTPAKGTLIEIIFP 809
             S   KG+   I+ P
Sbjct: 417 AKSEYGKGSTFTIVLP 432


>gi|229051134|ref|ZP_04194678.1| hypothetical protein bcere0027_50850 [Bacillus cereus AH676]
 gi|228722197|gb|EEL73598.1| hypothetical protein bcere0027_50850 [Bacillus cereus AH676]
          Length = 613

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 83/372 (22%), Positives = 158/372 (42%), Gaps = 25/372 (6%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +  +   E E  +L S+L   +DG+   +R+G I+  N    K+     E  L +     
Sbjct: 258 QQARSSTESERRKLSSVLSHMTDGVIATDRKGDIILLNDPAEKMLNVSRETALDQSVLEV 317

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
           L       ++H   E  S+ L  +                  +I K+   ++     ++D
Sbjct: 318 LGIQEEFTLDHLYEEPDSVLLDFSTRNEPYILRAS-----FSVIQKETGKANGLIAVLYD 372

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           ++                E+    + +F+A VSHE+RTPLT +  + E + +  +     
Sbjct: 373 VT--------------EQERIERERREFVANVSHELRTPLTTMRSYLEALTDGAWQDPNI 418

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
                +          ++ +VN LL +SK++S +  L  E V   +  +  I   +  + 
Sbjct: 419 APQ--FLTVTQEETERMIRLVNALLQLSKLDSTEYRLMKEWVDFTDFFNNIIDRFE-MSK 475

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV-IL 739
           E+ +  + SF+     I  D   + Q+  NI+SNA+ ++P GG +          ++  +
Sbjct: 476 EQNVSFKRSFSKKSRFIDMDTDKITQVLYNIISNALKYSPEGGTVT--YRLRDRGDLLEI 533

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V D G+G+    ++K  + F ++  ++  +  GTGLGL +AK M++A+ G  +  S   
Sbjct: 534 SVSDQGMGIPKENVDKIFERFYRVDKARSRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEG 593

Query: 800 KGTLIEIIFPLY 811
           KGT I    P+ 
Sbjct: 594 KGTTIYFTLPMA 605


>gi|229917478|ref|YP_002886124.1| PAS/PAC sensor signal transduction histidine kinase
           [Exiguobacterium sp. AT1b]
 gi|229468907|gb|ACQ70679.1| PAS/PAC sensor signal transduction histidine kinase
           [Exiguobacterium sp. AT1b]
          Length = 613

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 88/433 (20%), Positives = 165/433 (38%), Gaps = 43/433 (9%)

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
            + +    +D    A   R                +     ++  +         +  + 
Sbjct: 211 SRTITRPIADMRRQAVEMRKGNFSRK---------VKVYSDDEVGQLAYAFNELTD--EL 259

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
                  E E  +L S+LE  SDG+   +R   ++  N     + G   E+ +       
Sbjct: 260 MEANATTEAERRRLTSVLENMSDGVVATDRSLRVILMNDQARDMIGVAEEEAMGTNLQSL 319

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSL 556
           L      V+              T+    +  + +E+L  +R     +   S       +
Sbjct: 320 LAFEEEIVIPE----------DGTMPTKLIDLSTDEELFLVRAYFSPIQKHSGPITGLIV 369

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            +HD++E +Q +                + +F+A VSHE+RTPLT +  + EV+    + 
Sbjct: 370 VLHDVTEQEQVEQD--------------RREFVANVSHELRTPLTTMRSYLEVLAEGAYQ 415

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
                    +          ++ +VNDLL +SK++S +  +        +  ++ I   +
Sbjct: 416 --DEELAPRFLETTQNETERMIRLVNDLLQLSKMDSKEYKMQKVKFDFVQFFNDIIDRHE 473

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
                  I  R         + AD   + Q+  NI++NAI F+P GG I   T   +   
Sbjct: 474 -MTKGDAIQFRRKLMKRRVYVHADQDKMTQVIDNIITNAIKFSPEGGTITFRTMLRAK-R 531

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           +++ ++D GVG+    L+K  + F ++  ++     GTGLGL +AK +V A+ G  +  S
Sbjct: 532 LVIGIKDEGVGIPKSNLKKIFERFYRVDKARARNIGGTGLGLSIAKEVVSAHGGDIWAES 591

Query: 797 TPAKGTLIEIIFP 809
              +GT I    P
Sbjct: 592 EFGRGTTIYFTIP 604


>gi|154685764|ref|YP_001420925.1| KinE [Bacillus amyloliquefaciens FZB42]
 gi|154351615|gb|ABS73694.1| KinE [Bacillus amyloliquefaciens FZB42]
          Length = 739

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 98/737 (13%), Positives = 237/737 (32%), Gaps = 67/737 (9%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLW 150
              + + +E   + +   A  +I   + D    +  +  N  +   LK+ + W       
Sbjct: 51  EMKIVQANEAAARMMQIEAESLINRSVLDFLYSVPQEELNKAVKKFLKKGHLWKEVPIKL 110

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
               T     +        +R+     +  F ++                ++ F  L + 
Sbjct: 111 DSGATKYIEFL--------ARDGIGEDYF-FVVMRDISSKKILEREFSMNEQLFKDLFDR 161

Query: 211 KKGHSSVEKEKYDIFSQQSPP-PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
                 +  +                +     S        D   K     +  +     
Sbjct: 162 AVDGIVLFDKDGGFIDANLSFCKSFEIGQNELSHLSLRHFTDGENKKHLKEIWETLRRKG 221

Query: 270 PE--QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
               +      +  +   +    +   +               +     + E    E  +
Sbjct: 222 NAKGELPVKLRSGEEKLFEFTITSNVISGFYMSIMRDITEKRLMELKLFKSEERFREIFE 281

Query: 328 KCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIE--------IAGGLSTLLDAPKLSDN 378
                  ++   G +  AN S   + +      +E                +        
Sbjct: 282 NAMDAIVIWSDDGKIAKANESACRIFELPMDKLVETNLCTFIVDPQKKYKQIKKKYEKYG 341

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
              + ++   ++                 ++   +                         
Sbjct: 342 EIREEMLFQMANGQFKELEFTSKRTILEGQHLTIL---------------------RNVS 380

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
           D +  ++++    ++   +   + DG  + + +  I+  N   S++ G P E++      
Sbjct: 381 DRKRMEKELRESELKFRKVFNGSMDGKVLFDNQFRIIDANPLASRILGMPDEELRAYTVP 440

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM 558
             L             +I    +   +  +   S   +   S +  I +           
Sbjct: 441 DILSLFDIENAGVPARKIDLEGMDNEIPFLLSSSDSRKLEFSFKRNIIQNMN----LAIF 496

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            D++E K+ + +L  +  +         +  A ++HEIR P+TA+ GF ++++    G  
Sbjct: 497 KDVTEAKELEERLRKSDTLHVV-----GELAAGIAHEIRNPMTALKGFIQLLQGSIEG-- 549

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
               Y  Y N I      +  I+ + L ++K ++    + +E   + + + +   L+   
Sbjct: 550 ---EYSLYFNVITSELKRIESIITEFLILAKPQA----ILYEEKDVTQIMKDTADLLNAQ 602

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738
           AN   + I  +   NIP I  +   +KQ+ +NIL NAI   P GG I ++   +  + ++
Sbjct: 603 ANLVNVQIHLNLTGNIPPIYCEPNQLKQVFINILKNAIEVMPGGGNIYVTIQSSDQDHIL 662

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           + ++D G G++  +L++  +PF    +       GTGLGL ++  +++ + G+ ++ S  
Sbjct: 663 ISIQDEGTGISEDKLKRLGEPFYTTKD------RGTGLGLMVSYKIIEEHQGRIHVESEE 716

Query: 799 AKGTLIEIIFPLYDTSH 815
            KGT+  +  P+   + 
Sbjct: 717 GKGTVFHLTLPIRQNTE 733



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 51/137 (37%), Gaps = 3/137 (2%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +    +++ ++ +   I+  T D I I  +E  I+  N A +++     E ++ +    F
Sbjct: 21  KEENDRLKSDLNRYHVIMNNTLDAIFICRKEMKIVQANEAAARMMQIEAESLINRSVLDF 80

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
           L       +N  + + L       L K             +  + +       + + M D
Sbjct: 81  LYSVPQEELNKAVKKFLKKGH---LWKEVPIKLDSGATKYIEFLARDGIGEDYFFVVMRD 137

Query: 561 ISEWKQEKNKLSHAKKI 577
           IS  K  + + S  +++
Sbjct: 138 ISSKKILEREFSMNEQL 154


>gi|332799516|ref|YP_004461015.1| integral membrane sensor signal transduction histidine kinase
           [Tepidanaerobacter sp. Re1]
 gi|332697251|gb|AEE91708.1| integral membrane sensor signal transduction histidine kinase
           [Tepidanaerobacter sp. Re1]
          Length = 572

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 77/396 (19%), Positives = 170/396 (42%), Gaps = 37/396 (9%)

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
           +  +  ++            + ++  IN   ++ E  QL ++L + +DG+   +    I+
Sbjct: 209 VDVDSEDEIGTLAKTINYLSDVLNENIN--ALDQEKKQLQNVLLSMTDGVVTFDTANQII 266

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
             N    ++           P     + +  +++   L  +       + E         
Sbjct: 267 MANPQALEI----------MPTIKEHDNSYLNILEPLLKHVKDSGEYISEELRI-----N 311

Query: 536 EKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
            +++S R+              + + D++  ++ ++               + +FL  +S
Sbjct: 312 GRIISTRLTPLFNENQQLWGILVVLKDVTRERKLED--------------LRKEFLGDIS 357

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HE+RTPLT + G++E + +          +  Y N I      +  +V++LL +S IE+G
Sbjct: 358 HELRTPLTYLQGYTEALLDGLV--ENREEHDRYLNVILEETLRLRRLVDELLQLSHIEAG 415

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713
            +N+  + VS+ + +      V    ++K I ++     +IP I AD   ++Q+ +N++ 
Sbjct: 416 HLNIKKDRVSIKDLIERVSKKVLPICDDKNIELKIEI-EDIPSITADEDRIEQVMINLID 474

Query: 714 NAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
           NA+ ++ +  +III         +I+ V+D+G G+   EL    + F ++  S+  +  G
Sbjct: 475 NAVRYSSNDSKIIIKAQSCKEG-IIISVKDSGSGIPEDELPFIWERFYKVDKSRTRQKSG 533

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           TGLGL + K +V+ + G+ +  + P  G     + P
Sbjct: 534 TGLGLAIVKKIVELHGGRVWAKNCPEGGAEFSFLMP 569


>gi|254418414|ref|ZP_05032138.1| PAS fold family [Brevundimonas sp. BAL3]
 gi|196184591|gb|EDX79567.1| PAS fold family [Brevundimonas sp. BAL3]
          Length = 647

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 102/494 (20%), Positives = 184/494 (37%), Gaps = 22/494 (4%)

Query: 320 NLTPETVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
               + V+  PI   V+    +    N +      Y S D++               +D 
Sbjct: 15  AQFCQAVEHSPIGTAVFGLDGVWLNGNAALRRFLGYSS-DELRTVNFRDVTHPDDLDADL 73

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
              + +          +       I+ +   + A   +     +   E +       +  
Sbjct: 74  VLFEQLT----SGRIPSYEIEKRYIRKDGGVAWAARTVSL-VRSAAGEPLFYISHVQDIA 128

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
             +  + +      +      A   GI  ++     LS +  +  LF  P  D+L   F 
Sbjct: 129 GRKAAEAERLKLADRATLAARAAHIGIWELDLNTNALSWSPEMFDLFLTPAPDVLDLAFF 188

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSL 556
                          T      L    E     +  E + +     +++           
Sbjct: 189 TSFVLEDDRETLQRDTAAALNGLLLDTEFRIRRTDGEIRHIKGFGSLERGVGGAPDRLVG 248

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
              D++E ++         + AE  S  KS FLA +SHEIRTP+  I+G ++ ++     
Sbjct: 249 ANWDVTEMRRL-------AERAEAASRAKSQFLAVMSHEIRTPMNGILGMTQAMQADPLP 301

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
            L      E  + +  SG  +L I+ND+LD+SK+E+GKM L      L   +    S   
Sbjct: 302 AL----QRERLDIVAESGAALLTILNDILDLSKVEAGKMELESVAFDLGILLGNLRSTYA 357

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
             A+++ +++     +       D   ++QI  N++SN++ FT  G +I I       + 
Sbjct: 358 STADDQGLILALDLGDAAGLYRGDPTRLRQILSNLISNSLKFTARG-RIDI-AARRDGQT 415

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           ++L V DTGVGMT   + +   PF Q   S   +  GTGLGL +   +     G+  + S
Sbjct: 416 LVLTVADTGVGMTTEVIARIFNPFAQADASTTRQFGGTGLGLSIVHELTRLMQGRIDVDS 475

Query: 797 TPAKGTLIEIIFPL 810
            P +G+   ++ PL
Sbjct: 476 RPGEGSRFTVVLPL 489



 Score = 65.0 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 25/254 (9%), Positives = 61/254 (24%), Gaps = 11/254 (4%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG--KT 147
              G     +  L + +G  + ++  +   DV+    +D +  + + L          + 
Sbjct: 32  GLDGVWLNGNAALRRFLGYSSDELRTVNFRDVTHPDDLDADLVLFEQLTSGRIPSYEIEK 91

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                +G   +    ++   + S   E   +     V          A   +L  + +  
Sbjct: 92  RYIRKDGGVAWAARTVSL--VRSAAGEPLFY--ISHVQDIAGRKAAEAERLKLADRATLA 147

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH----KDDVLKTEKYPLLT 263
                          +  S       L +      L   +      +DD    ++     
Sbjct: 148 ARAAHIGIWELDLNTNALSWSPEMFDLFLTPAPDVLDLAFFTSFVLEDDRETLQRDTAAA 207

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
                L  +      +      K  FG+L+     + + L   N                
Sbjct: 208 LNGLLLDTEFRIRRTDGEIRHIK-GFGSLERGVGGAPDRLVGANWDVTEMRRLAERAEAA 266

Query: 324 ETVDKCPIPFFVYS 337
                  +    + 
Sbjct: 267 SRAKSQFLAVMSHE 280


>gi|229148015|ref|ZP_04276354.1| hypothetical protein bcere0012_51360 [Bacillus cereus BDRD-ST24]
 gi|228635440|gb|EEK91931.1| hypothetical protein bcere0012_51360 [Bacillus cereus BDRD-ST24]
          Length = 613

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 83/372 (22%), Positives = 158/372 (42%), Gaps = 25/372 (6%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +  +   E E  +L S+L   +DG+   +R+G I+  N    K+     E  L +     
Sbjct: 258 QQARSSTESERRKLSSVLSHMTDGVIATDRKGDIILLNDPAEKMLNVSRETALDQSVLEV 317

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
           L       ++H   E  S+ L  +                  +I K+   ++     ++D
Sbjct: 318 LGIQEEFTLDHLYEEPDSVLLDFSTRNEPYILRAS-----FSVIQKETGKANGLIAVLYD 372

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           ++                E+    + +F+A VSHE+RTPLT +  + E + +  +     
Sbjct: 373 VT--------------EQERIERERREFVANVSHELRTPLTTMRSYLEALTDGAWQDPNI 418

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
                +          ++ +VN LL +SK++S +  L  E V   +  +  I   +  + 
Sbjct: 419 APQ--FLTVTQEETERMIRLVNALLQLSKLDSTEHRLMKEWVDFTDFFNNIIDRFE-MSK 475

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV-IL 739
           E+ +  + SF+     I  D   + Q+  NI+SNA+ ++P GG +          ++  +
Sbjct: 476 EQNVSFKRSFSKKSRFIDMDTDKITQVLYNIISNALKYSPEGGTVT--YRLRDRGDLLEI 533

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V D G+G+    ++K  + F ++  ++  +  GTGLGL +AK M++A+ G  +  S   
Sbjct: 534 SVSDQGMGIPKENVDKIFERFYRVDKARSRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEG 593

Query: 800 KGTLIEIIFPLY 811
           KGT I    P+ 
Sbjct: 594 KGTTIYFTLPMA 605


>gi|71907073|ref|YP_284660.1| PAS [Dechloromonas aromatica RCB]
 gi|71846694|gb|AAZ46190.1| PAS protein [Dechloromonas aromatica RCB]
          Length = 794

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 96/480 (20%), Positives = 176/480 (36%), Gaps = 37/480 (7%)

Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
           +SV      G L  +L +       A   +         +        I       + ++
Sbjct: 161 RSVALWGQIGSLLFILLSSAAIVLIAQHLITRRVKLSLDVLKKVEDGAIDAR----IPVS 216

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII 474
                   Q   N     +       R N  +++ +   L S++E T   +   +++   
Sbjct: 217 LEDELGQLQRGINSMTAKLGELLRQHRGNADELKKQKELLQSVIEHTPLRVFWKDKDCRY 276

Query: 475 LSTNRAVSKLFGY-PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
           L  N   +   G    ++++ K       +    +       ++   + + ++     +T
Sbjct: 277 LGCNSLFALDAGLTSPDELIGKSDFELSWREQAELYRADDQAVMVSGVPK-IDFEEPQTT 335

Query: 534 KEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEK--------- 580
            +   + L      L               DI+E K    +L+  +   E+         
Sbjct: 336 PDGHTIWLSTSKVPLHTGDDEVIGVLGIYTDITERKNTAQELAKHRLHLEQLVEERTEEL 395

Query: 581 ---------ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
                     +  KS FLA +SHEIRTPL AI G +  I+     P    +  E    ++
Sbjct: 396 LLAKDAAENANMAKSAFLANMSHEIRTPLNAIAGMAHFIRRGGLSP----KQSEQLEKLE 451

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
            +   +L+I+N +L++SKIE+GK  +   P+ ++  +   +SL+   A  K I +     
Sbjct: 452 GASTHLLNIINAILELSKIEAGKFEIEESPIKVESILGNVLSLLHDRAEAKHIKLLCEIE 511

Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV----ILRVRDTGVG 747
                +L D   ++Q  LN  +NA+ FT +G  + +         +       VRDTG+G
Sbjct: 512 LLPKDLLGDATRLQQALLNYTTNAVKFTETGS-VTLRVHPVDENAISTVLRFEVRDTGIG 570

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           +    L K    F Q  NS   +  GTGLGL + K + +   G     ST  +G+     
Sbjct: 571 IAPEVLPKLFSAFEQADNSTTRKYGGTGLGLAITKKLAEMMGGDSGAESTLGRGSTFWFT 630


>gi|325955797|ref|YP_004286407.1| putative histidine kinase [Lactobacillus acidophilus 30SC]
 gi|325332362|gb|ADZ06270.1| putative histidine kinase [Lactobacillus acidophilus 30SC]
          Length = 618

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 87/396 (21%), Positives = 171/396 (43%), Gaps = 33/396 (8%)

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
           ++  +           ++    +   + E  +L S+L   SDG+   +R G +   N+  
Sbjct: 235 DELGQLGRAFNTLSVRIERSQEES--DSERRRLDSVLSHMSDGVLATDRHGNVSVVNQMA 292

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
                   ED++ KP    L     S       +++S      +        +     S 
Sbjct: 293 LNFLNVKEEDVINKPIAEVLGLKDTSS-----QDLISSQKEIVVTIDPNTRDEMILHASF 347

Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
            +I +   F S     +HD++E ++ ++               +  F++ VSHE+RTPLT
Sbjct: 348 SLIKRVTGFVSGSVCVLHDVTEQQKNED--------------SQKQFVSNVSHELRTPLT 393

Query: 602 AIIGFSEVIKNQRFGPLGNPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
           ++  + E +     G   +P    ++     +  + ++ ++NDLL +S+++ G   +  E
Sbjct: 394 SLQAYIEALNE---GAWKDPNIAPKFLEVTQQETSRMIRMINDLLSLSRMDRGVSKMDLE 450

Query: 661 PVSLDEAVSEAISLVQLYANEKRI-------LIRTSFANNIPRILADLRSVKQIALNILS 713
            V+L++ V+  ++   +     +         I+    N    +  D   + Q+  NI++
Sbjct: 451 FVNLNDFVNHILNRFDMIVKTDKNNDKKKKYTIKRELGNQALWVEIDTDKMMQVIDNIMN 510

Query: 714 NAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
           NAI ++P GG I +  T   N  VIL + D G+G+   +L K    F ++  ++     G
Sbjct: 511 NAIKYSPDGGVITVRLTQNKN-HVILSISDQGLGIPRKDLGKIFDRFYRVDKARSRAQGG 569

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           TGLGL +AK +V+A+ G+ +  S+  KG+   I  P
Sbjct: 570 TGLGLAIAKEIVEAHHGRIWADSSEGKGSTFYISLP 605


>gi|308272179|emb|CBX28786.1| hypothetical protein N47_L13840 [uncultured Desulfobacterium sp.]
          Length = 498

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 100/508 (19%), Positives = 180/508 (35%), Gaps = 28/508 (5%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLS 367
            +        E L    +D  P    +      +  AN +FL   +    + I     L 
Sbjct: 8   EADHELSKRYEQLYTMLLDAIPSSVLLIDQHMRIVSANRNFLEKGQRTLTNTIG--YRLE 65

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
            +     L   +  K   +               T +    +     +            
Sbjct: 66  EVFPTIILDQMDITK--RIRHVIEKNQPVKGERMTYRAPGVSIRIYYYSLLP-FTWQGRV 122

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
                +  +  +      ++      L SI+E+ SD I   +R+G IL+ N A  +L G+
Sbjct: 123 EGAVLLMDDVTEQVRLGEEVRRVERHLASIVESASDLILSTDRKGRILTWNTAAERLTGF 182

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
            V ++  + F  F        ++   + I      Q   K     T +   + +  +   
Sbjct: 183 QVTEVRERCFVDFCTDEDHKDIHDIFSLIDMRKYAQM--KECTLRTSKGTSIPVSFVFSP 240

Query: 548 LPFS----SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
           L  S    +       D++E ++ + +L  A+K A             ++HEIR PL   
Sbjct: 241 LKDSYNHTAGVVAVGRDLTERRKLEMELHQAQKFA-----ALGVMAGGIAHEIRNPLAIC 295

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
              ++ +  +   P       E A+ I         I+ +LL  S             ++
Sbjct: 296 SSSAQFLMEEDGTP---EFRRECADKIHMGIRRTSAIIENLLKYSHP---SKTTQTTLIN 349

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
           +   + E   LV  +A   +I I TSF      +      ++Q+ +N+  NAI+  PSGG
Sbjct: 350 IISLIKETQILVTYHAKILKIEINTSFPRQPVVVEGVATLLQQVFMNLFLNAINAMPSGG 409

Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
            + I      +  V ++V DTG G++  E+ K   PF        I G+GTGLGL L  +
Sbjct: 410 NLGIDVKIFDS-RVRVQVTDTGCGISPREIGKIFDPFYTT----SIVGQGTGLGLSLCYS 464

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFPLY 811
           +V  + G   + S    G+   +  P +
Sbjct: 465 IVKQHSGTIDVESAEGSGSTFTVNLPAH 492



 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/242 (10%), Positives = 75/242 (30%), Gaps = 11/242 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN---HIGDLLKRQNTWYG 145
           ID H  +   +    +         IG RL +V   + +D  +    I  ++++     G
Sbjct: 35  IDQHMRIVSANRNFLEKGQRTLTNTIGYRLEEVFPTIILDQMDITKRIRHVIEKNQPVKG 94

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +   +   G ++ +    + LP ++      G     ++             +R+++  +
Sbjct: 95  ERMTYRAPGVSIRIY-YYSLLP-FTWQGRVEGA--VLLMDDVTEQVRLGEEVRRVERHLA 150

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLR----MKNKVSSLTEYYAHKDDVLKTEKYPL 261
            + E           K  I +  +    L      + +     ++   +D     + + L
Sbjct: 151 SIVESASDLILSTDRKGRILTWNTAAERLTGFQVTEVRERCFVDFCTDEDHKDIHDIFSL 210

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
           +   + +  ++    T           F  L+++   +   ++     +     +   + 
Sbjct: 211 IDMRKYAQMKECTLRTSKGTSIPVSFVFSPLKDSYNHTAGVVAVGRDLTERRKLEMELHQ 270

Query: 322 TP 323
             
Sbjct: 271 AQ 272



 Score = 41.9 bits (97), Expect = 0.44,   Method: Composition-based stats.
 Identities = 25/251 (9%), Positives = 56/251 (22%), Gaps = 12/251 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            D  G +   +    +  G    ++      D          + I  L+  +     K  
Sbjct: 163 TDRKGRILTWNTAAERLTGFQVTEVRERCFVDFCTDEDHKDIHDIFSLIDMRKYAQMKEC 222

Query: 149 LWPIE-GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR------ALGKRLD 201
                 GT++ V    +  P+       +G    G                       L 
Sbjct: 223 TLRTSKGTSIPVSFVFS--PLKDSYNHTAGVVAVG--RDLTERRKLEMELHQAQKFAALG 278

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
                +    +   ++         ++   P  R +     +         +++      
Sbjct: 279 VMAGGIAHEIRNPLAICSSSAQFLMEEDGTPEFR-RECADKIHMGIRRTSAIIENLLKYS 337

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
             S+ +          I   Q     +   L+     SF           +       NL
Sbjct: 338 HPSKTTQTTLINIISLIKETQILVTYHAKILKIEINTSFPRQPVVVEGVATLLQQVFMNL 397

Query: 322 TPETVDKCPIP 332
               ++  P  
Sbjct: 398 FLNAINAMPSG 408


>gi|283781072|ref|YP_003371827.1| PAS/PAC sensor signal transduction histidine kinase [Pirellula
           staleyi DSM 6068]
 gi|283439525|gb|ADB17967.1| PAS/PAC sensor signal transduction histidine kinase [Pirellula
           staleyi DSM 6068]
          Length = 461

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 82/375 (21%), Positives = 172/375 (45%), Gaps = 26/375 (6%)

Query: 438 VDTRINKR--KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
           +  ++  R  +++    +L ++L++  +G+  ++ E  I+  N A  K+  +   + L +
Sbjct: 103 MQEKLAHRVDEVQENTERLQTVLQSMVEGVLAVDPEHSIMLANDAARKMLDFAKSNPLGR 162

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555
           P    LE      +   +    +      LE  + G  +  + L+L              
Sbjct: 163 PL---LEVTRARPVFEAVNTAFNSPGPVELEFESPGVHR--RCLALHATRLPGSPCPGVM 217

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
           L + D+SE ++ +              + + + +A VSHE++TPL AI  ++E +   R 
Sbjct: 218 LVLRDVSELRRLE--------------NLRRELVANVSHELKTPLAAIKAYAETL---RL 260

Query: 616 GPLGNPRY-IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
           G + +P   + + + I+     + +++ D+L I+++E+G+       V L E + E ++ 
Sbjct: 261 GAVNDPEINLTFVHRIEEQAERLHELILDILQIARVEAGQEAFEICDVPLHELIEECLAQ 320

Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
               A  KR+ +     +    +  D   V+ I  N++ NAI +TP+ G++ +  T  ++
Sbjct: 321 FADLAQSKRVELIGPPIDQEIFVRGDEEGVRTILNNLVDNAIKYTPADGRVTVRCTIETS 380

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
             V+L V+DTG+G+   +  +  + F ++  ++     GTGLGL + K +  A  G   +
Sbjct: 381 A-VMLEVQDTGIGIAEKDQARVFERFYRVDKARSREMGGTGLGLSIVKHLSQALGGSVGL 439

Query: 795 FSTPAKGTLIEIIFP 809
            ST  KG+   +  P
Sbjct: 440 DSTIGKGSTFRVHLP 454


>gi|218550493|ref|YP_002384284.1| aerobic respiration control sensor protein ArcB [Escherichia
           fergusonii ATCC 35469]
 gi|218358034|emb|CAQ90680.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia fergusonii ATCC 35469]
 gi|324115186|gb|EGC09150.1| hsp90-like protein [Escherichia fergusonii B253]
 gi|325498791|gb|EGC96650.1| aerobic respiration control sensor protein ArcB [Escherichia
           fergusonii ECD227]
          Length = 778

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 85/435 (19%), Positives = 181/435 (41%), Gaps = 17/435 (3%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L +           L  +Q     +     I   +  +         ++ E
Sbjct: 81  EESRQRLSRLVQKLEEMRERDLSL-NVQLKDNIAQLNQEIAVREKAEAELQETFEQLKIE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             +    + ++E +   L S L+A+ D +   N +      NRA+  L G   + ++   
Sbjct: 140 IKEREETQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLK 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCY 554
                  +    +     ++   ++  + E+        +    +R +    ++      
Sbjct: 200 PQDVYAPDVAEKVIETDEKVFRHNVSLSYEQWLQYPDGRKACFEIRKVPYYDRVGKRHGL 259

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K       H +   E+ S  K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 260 MGFGRDITERK-------HYQDALEQASRDKTTFISTISHELRTPLNGIVGLSRILLDTD 312

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                N    +Y   I  S   + +I ND++D+ KIE  K+ L  +P+     +++  +L
Sbjct: 313 L----NAEQEKYLKTIHVSAVTLGNIFNDIIDMDKIERRKVQLDNQPIDFTGFLADLENL 368

Query: 675 VQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
             L A +K +         +P +++ D   ++Q+  N++SNA+ FT  G ++ +   +  
Sbjct: 369 SGLQAQQKGLRFVMEPTLPLPHQVITDGTRLRQVLWNLISNAVKFTQQG-KVEVRVRYDK 427

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMGKF 792
            E +   V D+G+G+   E +K    + Q+ +SQ  +   GTG+GL +++ +     G  
Sbjct: 428 GEMLHFEVADSGIGIPQEEQDKIFAMYYQVKDSQGGKPATGTGIGLAVSRRLARDMGGDI 487

Query: 793 YIFSTPAKGTLIEII 807
            + S P +G++  + 
Sbjct: 488 SVSSVPGQGSVFTLT 502


>gi|30023490|ref|NP_835121.1| two-component sensor kinase yycG [Bacillus cereus ATCC 14579]
 gi|206970358|ref|ZP_03231311.1| sensory box histidine kinase YycG [Bacillus cereus AH1134]
 gi|218232571|ref|YP_002370240.1| sensory box histidine kinase YycG [Bacillus cereus B4264]
 gi|228942614|ref|ZP_04105146.1| hypothetical protein bthur0008_52410 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228955716|ref|ZP_04117711.1| hypothetical protein bthur0006_50640 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228975544|ref|ZP_04136096.1| hypothetical protein bthur0003_52880 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228982180|ref|ZP_04142469.1| hypothetical protein bthur0002_53340 [Bacillus thuringiensis Bt407]
 gi|229072930|ref|ZP_04206126.1| hypothetical protein bcere0025_50900 [Bacillus cereus F65185]
 gi|229112878|ref|ZP_04242409.1| hypothetical protein bcere0018_51150 [Bacillus cereus Rock1-15]
 gi|229130711|ref|ZP_04259664.1| hypothetical protein bcere0015_51420 [Bacillus cereus BDRD-Cer4]
 gi|229153623|ref|ZP_04281800.1| hypothetical protein bcere0011_51520 [Bacillus cereus m1550]
 gi|229193716|ref|ZP_04320657.1| hypothetical protein bcere0002_53590 [Bacillus cereus ATCC 10876]
 gi|296505893|ref|YP_003667593.1| two-component sensor kinase yycG [Bacillus thuringiensis BMB171]
 gi|29899051|gb|AAP12322.1| Two-component sensor kinase yycG [Bacillus cereus ATCC 14579]
 gi|206734935|gb|EDZ52104.1| sensory box histidine kinase YycG [Bacillus cereus AH1134]
 gi|218160528|gb|ACK60520.1| sensory box histidine kinase YycG [Bacillus cereus B4264]
 gi|228589741|gb|EEK47619.1| hypothetical protein bcere0002_53590 [Bacillus cereus ATCC 10876]
 gi|228629852|gb|EEK86504.1| hypothetical protein bcere0011_51520 [Bacillus cereus m1550]
 gi|228652728|gb|EEL08613.1| hypothetical protein bcere0015_51420 [Bacillus cereus BDRD-Cer4]
 gi|228670557|gb|EEL25870.1| hypothetical protein bcere0018_51150 [Bacillus cereus Rock1-15]
 gi|228710176|gb|EEL62154.1| hypothetical protein bcere0025_50900 [Bacillus cereus F65185]
 gi|228777532|gb|EEM25810.1| hypothetical protein bthur0002_53340 [Bacillus thuringiensis Bt407]
 gi|228784154|gb|EEM32181.1| hypothetical protein bthur0003_52880 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228803944|gb|EEM50568.1| hypothetical protein bthur0006_50640 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228817040|gb|EEM63133.1| hypothetical protein bthur0008_52410 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|296326945|gb|ADH09873.1| two-component sensor kinase yycG [Bacillus thuringiensis BMB171]
 gi|326943263|gb|AEA19159.1| two-component sensor kinase yycG [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 613

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 83/372 (22%), Positives = 158/372 (42%), Gaps = 25/372 (6%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +  +   E E  +L S+L   +DG+   +R+G I+  N    K+     E  L +     
Sbjct: 258 QQARSSTESERRKLSSVLSHMTDGVIATDRKGDIILLNDPAEKMLNVSRETALDQSVLEV 317

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
           L       ++H   E  S+ L  +                  +I K+   ++     ++D
Sbjct: 318 LGIQEEFTLDHLYEEPDSVLLDFSTRNEPYILRAS-----FSVIQKETGKANGLIAVLYD 372

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           ++                E+    + +F+A VSHE+RTPLT +  + E + +  +     
Sbjct: 373 VT--------------EQERIERERREFVANVSHELRTPLTTMRSYLEALTDGAWQDPNI 418

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
                +          ++ +VN LL +SK++S +  L  E V   +  +  I   +  + 
Sbjct: 419 APQ--FLTVTQEETERMIRLVNALLQLSKLDSTEHRLMKEWVDFTDFFNNIIDRFE-MSK 475

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV-IL 739
           E+ +  + SF+     I  D   + Q+  NI+SNA+ ++P GG +          ++  +
Sbjct: 476 EQNVSFKRSFSKKSRFIDMDTDKITQVLYNIISNALKYSPEGGTVT--YRLRDRGDLLEI 533

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V D G+G+    ++K  + F ++  ++  +  GTGLGL +AK M++A+ G  +  S   
Sbjct: 534 SVSDQGMGIPKENVDKIFERFYRVDKARSRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEG 593

Query: 800 KGTLIEIIFPLY 811
           KGT I    P+ 
Sbjct: 594 KGTTIYFTLPMA 605


>gi|239905744|ref|YP_002952483.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239795608|dbj|BAH74597.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 721

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 107/580 (18%), Positives = 208/580 (35%), Gaps = 36/580 (6%)

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE-YLSHRNHPSLSA 313
            ++K P          +    H +     + ++    +        E  L +        
Sbjct: 2   TSDKLPAAQGLRERAEQLLQAHGVAGRSLSPEENQAVIHELQVHQIELELQNEELQRSQV 61

Query: 314 YFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                         K P+ + V      +   N +FL +  +           +      
Sbjct: 62  ELALALERFSILFHKAPVGYVVLDKDAMIQEVNHTFLDMIGWT------GRKPVGRPFFE 115

Query: 373 PKLSDNNAIKPVMLYR--SDRTCIAASARLHTIQWNRENSLA---MTFIPFEKANQFPEN 427
                   +                    L       +  L    +   P       P  
Sbjct: 116 YIAEPARPVFVARYRALFKSPEGKKVETVLDVHGGVDKPVLLEACVHEQPAGLEKPGPAP 175

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG- 486
                +  +    R  +  +          L+  S  IAI++  G IL+ N A       
Sbjct: 176 QLFLAVS-DISARRKAEEALMESERFARGTLDGLSAHIAIVDEAGNILAVNSAWRAFAAD 234

Query: 487 -------YPVEDILRKPFTVFLEQNTPSVMN--HYLTEILSLDLRQTLEKITLGSTKEEK 537
                          +     +     +       + E+L+  L     +    S  E++
Sbjct: 235 ASCTPGAVSEGANYFRACQGAIGDEADTAGRIARAIREVLAGRLPFFSLEYPCHSPTEKR 294

Query: 538 LLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
              +R+        +   +   +++E  Q    L+ AK+ AE  +  KS+FLA +SHEIR
Sbjct: 295 WFQVRVTRFPGDGPARAVVAHENVTERVQATAALASAKEAAEAAARAKSEFLANMSHEIR 354

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TPL  ++G  +++K        +    ++      S   +L ++N++LDIS+IE+G+  +
Sbjct: 355 TPLNGVMGMLQLLKLTGC----DEERNDFIKLAYDSSERLLQLLNNILDISRIEAGRTVM 410

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAI 716
             EP S  E + E + L Q  A  K + +  S  + +P  +  D+  ++Q+  N++ NA+
Sbjct: 411 VQEPFSPLELLQEPVLLFQGMAKAKNVTMAFSADDGLPEQVTGDVPKIRQVLFNLVGNAV 470

Query: 717 HFTPSGGQIIISTTH------TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
            FT   GQ+ ++  +      +    +++ V DTG G++   L +  +PF Q  +S + +
Sbjct: 471 KFT-QNGQVRLAVAYAGSPASSDKATLVVTVADTGKGISAELLPELFQPFTQGDSSFKKQ 529

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             GTGLGL + K +V    G   + S   +GT + +  P+
Sbjct: 530 YAGTGLGLSIVKRLVCLMGGALCLESVEGEGTTVHLSVPV 569



 Score = 41.2 bits (95), Expect = 0.67,   Method: Composition-based stats.
 Identities = 21/242 (8%), Positives = 52/242 (21%), Gaps = 18/242 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCD-VSDILHIDPNNHIGDLLKRQNTWYGKT 147
           +D    ++E++      IG    K +G    + +++            L K       +T
Sbjct: 84  LDKDAMIQEVNHTFLDMIGWTGRKPVGRPFFEYIAEPARPVFVARYRALFKSPEGKKVET 143

Query: 148 TLWPIEGTNLYVPID--LAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
            L    G +  V ++  +   P     +     + F  V                ++   
Sbjct: 144 VLDVHGGVDKPVLLEACVHEQPA-GLEKPGPAPQLFLAVSDISARRKAEEALMESERFAR 202

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY--------------AHKD 251
              +    H ++  E  +I +  S           +                        
Sbjct: 203 GTLDGLSAHIAIVDEAGNILAVNSAWRAFAADASCTPGAVSEGANYFRACQGAIGDEADT 262

Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
                     + +        E        +   +        +               +
Sbjct: 263 AGRIARAIREVLAGRLPFFSLEYPCHSPTEKRWFQVRVTRFPGDGPARAVVAHENVTERV 322

Query: 312 SA 313
            A
Sbjct: 323 QA 324


>gi|156743113|ref|YP_001433242.1| multi-sensor signal transduction histidine kinase [Roseiflexus
           castenholzii DSM 13941]
 gi|156234441|gb|ABU59224.1| multi-sensor signal transduction histidine kinase [Roseiflexus
           castenholzii DSM 13941]
          Length = 911

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 120/598 (20%), Positives = 226/598 (37%), Gaps = 50/598 (8%)

Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
              A ++  L  E   L    E  +   E    + + + T +         S        
Sbjct: 329 AAIALENARLYAEVRALNADLERRIA--ERTRELKIERDTLETLNAIALEVSSTLDGDEI 386

Query: 305 HRNHPSLSAYFDEGENLTPETVD----KCPIPFFVYSHGNLFYANPSFLL----LTKYKS 356
             N     A     ++ +   +D    +      +    N+ Y   S          +  
Sbjct: 387 MSNSLKTLAKLIGVQHGSIMLLDRETDQLVDRAVLGKSDNVGYVRFSLGQGIVGWVAHHR 446

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVML------YRSDRTCIAASARLHTIQWNRENS 410
              I            P + D  A +   +         +   +   +      +  E+ 
Sbjct: 447 KPLIVDDVTADPRWTPPPIDDPLAKRQGSMIAVPLIAHHEVLGVLVLSHEQPAYFREEHL 506

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470
             +     + A            E +       +++ E  V Q  +IL++ SDG+ + ++
Sbjct: 507 RLLDASAKQIAIGIHNAQVYQHAEQQYFHRYEMQQRQEQAVSQSTAILQSLSDGVIVCDQ 566

Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY-LTEILSLDLRQTLEKIT 529
            G +L+ N A  K+   P+E+++       L +     ++   L ++L           T
Sbjct: 567 SGSVLTANLAAEKILERPIEELVTWNLEDLLRRLLGRRVDELSLNDLLRNPWDDQHRPRT 626

Query: 530 LGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
           L +T +    ++ I +  +  S            D +                 +    K
Sbjct: 627 LSTTFQIGPRTINITLDPVISSKETLIGAVAVFRDRTR--------------EVESDRLK 672

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
           ++F+  VSHE+RTP+T+I GF++++     GPL N    E+   I  +   ++ I+NDLL
Sbjct: 673 TEFIGTVSHELRTPMTSIKGFTQLLAMGGLGPL-NETQKEFLGIIQSNAERMIAIINDLL 731

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
           DI+KIE+G + L   P+ + E +S  +  +Q    +++  +  S    +P + AD R   
Sbjct: 732 DITKIETGSVELEIRPLHVAETLSTVMLDLQPKIQDRQQHLSLSIPAGLPLVRADARRFN 791

Query: 706 QIALNILSNAIHFTPSGGQIIISTT--------------HTSNEEVILRVRDTGVGMTNY 751
           QI  NI+SNA+ +TP GG I +                       V + VRDTGVG+   
Sbjct: 792 QILFNIVSNAVKYTPRGGSITVEAREVTADAVPDEERDGLRPGRYVQIDVRDTGVGIAPE 851

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +L +  + F +  N  ++   GTGLGL L K ++    G+ ++ S   +G++   + P
Sbjct: 852 DLPRIWERFYRTENPLKVEAGGTGLGLSLVKPLIRLLGGRIWVESCINEGSVFSFVIP 909


>gi|42522190|ref|NP_967570.1| two component sensor histidine kinase [Bdellovibrio bacteriovorus
           HD100]
 gi|39574721|emb|CAE78563.1| two component sensor histidine kinase [Bdellovibrio bacteriovorus
           HD100]
          Length = 909

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 91/386 (23%), Positives = 165/386 (42%), Gaps = 28/386 (7%)

Query: 450 EVMQLCSILEATSDGIAII----NREGI-----ILSTNRAVSKLFGYPVEDILRKPFTVF 500
               L S++++    + I+    + +       I   N +  K  GY +  I        
Sbjct: 387 SKEFLDSVIQSIKAFLFIVKVSHHDDWRQASYMISQANESALKFLGYSLNQISHVDLKQL 446

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF----SSCYSL 556
           +          +L +         L      + ++ + L + +    LP        +  
Sbjct: 447 INTQEEFNNYTWLLQTR-------LSIEAEITAQDGRRLPILMNWAALPNRTSKDLTFVF 499

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
              DI++    +  L  A++ A K S  KS+FLAR+SHEIRTPL AIIG ++++      
Sbjct: 500 VCTDITDRITAEQALIEAREQAVKASQAKSEFLARMSHEIRTPLNAIIGITDILAESDLK 559

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
           P       +       +G  +L ++ND+LDISKIE+ ++ L      L+   +    +++
Sbjct: 560 P----EQSQLVRVCANAGENLLALINDILDISKIEAREVRLEKIAFDLESTTTNICDILK 615

Query: 677 LYANEKRIL--IRTSFANN-IPRILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHT 732
             A EK +   +  +   N  P ++ D   ++QI  N++ NAI FT  G   +++    +
Sbjct: 616 QKATEKDLKFSLTVNLPKNRAPLVIGDPTRLRQILFNLIGNAIKFTQEGEIAVLLDFDSS 675

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
           S + V   +RDTG G+   +     + F Q  +S   +  G+GLGL ++K +V+   G+ 
Sbjct: 676 SQKFVRFTIRDTGTGIPKDKQHLLFQSFVQADSSITRKFGGSGLGLTISKNLVELMGGRI 735

Query: 793 YIFSTPAKGTLIEIIFPLYDTSHPHD 818
           +  S    G+      P   T  P +
Sbjct: 736 WFQSEEGSGSSFYFTVPYVPTEAPRE 761


>gi|330989290|gb|EGH87393.1| PAS protein [Pseudomonas syringae pv. lachrymans str. M301315]
          Length = 998

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 130/680 (19%), Positives = 241/680 (35%), Gaps = 56/680 (8%)

Query: 149 LWPIEGTNLYVPIDLAALPI--YSRNREFSGFRG--FGIVHVNRVDNDPRALGKRLDKKF 204
            W  +   + V ++ A  P+  +     F G       +V +             L    
Sbjct: 281 RWIAQHPTVRVVVNEAYAPLTFFDAKGNFRGITADLLELVRLRTGLRFDVKRSPSLTDML 340

Query: 205 SHLHEIKKGHS---SVEKEKYDIFSQQSP-----PPHLRMKNKVSSLTEYYAHKDDVLKT 256
           + + E +           E+ D  S   P        +  K++ S           +  T
Sbjct: 341 NQVSEGQADLIGALVSSDEREDHLSFSRPYIDNSFVLVTRKDQGSPSYLEQMDGKRLAIT 400

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
           +  P+L       P        N  Q       G  +                       
Sbjct: 401 QGSPMLDWLRRKYPRVVPLEIDNPFQALDMLSLGRTEGAVISLLSADY------------ 448

Query: 317 EGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
                            F               L++   S +  E++  L   L +    
Sbjct: 449 -----------FLSSGIFEERLQMTATIGEDPALISMATSRNATELSSILDKALASIAPQ 497

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           D  AI       +            +  W+    L    +                +  +
Sbjct: 498 DLAAINNRWRAYAP----------SSASWHDYERLIYQILISAGLLLLGLLAWNAWMRRQ 547

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
                  +R +  +   + +++E T   I + +REG++   N +  ++F    EDI+ K 
Sbjct: 548 IRQREAAERALGDQFEFMRALVEGTPHPIYVRDREGMLRMCNDSYLRVFSAQREDIIGKS 607

Query: 497 FTVFLEQNTPSV--MNHYLTEILSLDLRQTLEKITLGSTKEEKLL-SLRIIIKKLPFSSC 553
            T  +  N             +++ +    L++      ++  +   +      L     
Sbjct: 608 ATEGVLGNAFEAREYAADYQRVMASNTALILDRPLRIGDRQMTIYHWILPFRDSLGEVQG 667

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
                 DISE +Q    L  AK+ A+  S  KS FLA +SHEIRTP+ A+IG  E+   +
Sbjct: 668 IIGGWIDISERRQLIEDLQAAKEQADAASRAKSTFLATMSHEIRTPMNAVIGMLELALKR 727

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
                 +            S N +LD++ D+LDI++IESG+++L+ E  +L   V   + 
Sbjct: 728 ADHGELD---RSAIEVAYSSANDLLDLIGDILDIARIESGRLSLNPERANLRRLVESVLR 784

Query: 674 LVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTH 731
           +    A +K + +     + I   +L D    KQI  N++SNAI FTP G  +I++    
Sbjct: 785 VFDGLARQKDLDLVLELDSRINADVLIDPLRFKQILSNLVSNAIKFTPMGRIKIVLQAAE 844

Query: 732 TSNE---EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
           + +     + + V+D+G+G++  + ++  +PF Q  N+ Q+   G GLGL + +++    
Sbjct: 845 SPDPQLLHLHITVQDSGIGISAEDQQRLFEPFAQADNTGQMARTGAGLGLVICRSLCMMM 904

Query: 789 MGKFYIFSTPAKGTLIEIIF 808
            G   + S P +GT I +  
Sbjct: 905 GGNLSLDSVPGQGTRISMNL 924



 Score = 41.2 bits (95), Expect = 0.78,   Method: Composition-based stats.
 Identities = 23/239 (9%), Positives = 50/239 (20%), Gaps = 15/239 (6%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCD--VSDILHIDPNNHIGDLLKRQNTWYGKT 147
           D  G L+  ++   +        +IG    +  + +             +   NT     
Sbjct: 580 DREGMLRMCNDSYLRVFSAQREDIIGKSATEGVLGNAFEAREYAADYQRVMASNTALILD 639

Query: 148 TLWPIEGTN--LYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
               I      +Y  I    LP      E  G  G  I              +   ++  
Sbjct: 640 RPLRIGDRQMTIYHWI----LPFRDSLGEVQGIIGGWI--DISERRQLIEDLQAAKEQAD 693

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
                K    +    +                 +++     +   D       Y      
Sbjct: 694 AASRAKSTFLATMSHEIRTPMNAVIGML-----ELALKRADHGELDRSAIEVAYSSANDL 748

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
              + +  D   I   + +       L+   +                   E ++    
Sbjct: 749 LDLIGDILDIARIESGRLSLNPERANLRRLVESVLRVFDGLARQKDLDLVLELDSRINA 807


>gi|225569214|ref|ZP_03778239.1| hypothetical protein CLOHYLEM_05296 [Clostridium hylemonae DSM
           15053]
 gi|225162013|gb|EEG74632.1| hypothetical protein CLOHYLEM_05296 [Clostridium hylemonae DSM
           15053]
          Length = 678

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 94/383 (24%), Positives = 180/383 (46%), Gaps = 21/383 (5%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREG--IILSTNRAVSKLFGYPVEDILRKPFTVF--L 501
           K+E +  +  ++L +   G A ++      +L        + GY  +   ++  +    L
Sbjct: 137 KLEKKSREQDALLRSVPGGFARLDARDCSTVLWYGADFLGMIGYTAKQFEQELDSQCSYL 196

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLT 557
             +    +   L E+ +       E   +  + E K+L++ +       S      +   
Sbjct: 197 HPDDLQRIIPILHELETSGGSAVTEAQVITRSGETKILTITLSYASGEESWDGIPSFYTI 256

Query: 558 MHDIS----EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
             DI+    E ++++  L  A K A   S  K++FL+ +SH+IRTP+ AI+G + + +  
Sbjct: 257 GIDITKERMEQERQRKMLEDAYKTARIASEAKTNFLSSMSHDIRTPMNAIMGMTAIAEAN 316

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
            + P    +  +  + I+ S   +L ++N++LD+SKIESGK++L F  VSL E       
Sbjct: 317 LYTP---DKLKDCLSKINASAQHLLGLINEVLDMSKIESGKIDLTFGTVSLPELFQNISD 373

Query: 674 LVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
           + +  A EK   ++ S  +     ++ D   ++Q+ +N+L+NAI +TP GG I +     
Sbjct: 374 MCRPLAQEKNQKLQLSVDDVCHKTVITDGGRLQQVLMNLLTNAIKYTPEGGAISLHVREI 433

Query: 733 SNEEV-----ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
            ++ V        V D G+GMT   +    +PF +  +++  + +GTGLGL + + +V+ 
Sbjct: 434 PSDAVYKGQYEFIVTDNGIGMTAEYIPHIFEPFSRAEDTRINKIQGTGLGLAITQNIVNM 493

Query: 788 NMGKFYIFSTPAKGTLIEIIFPL 810
             G   + S P  G+   +  PL
Sbjct: 494 MNGTIEVQSEPENGSRFIVAVPL 516


>gi|218708513|ref|YP_002416134.1| aerobic respiration control sensor protein ArcB [Vibrio splendidus
           LGP32]
 gi|218321532|emb|CAV17484.1| aerobic respiration control sensor protein ArcB [Vibrio splendidus
           LGP32]
          Length = 795

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 85/392 (21%), Positives = 170/392 (43%), Gaps = 19/392 (4%)

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
            +E E       + ++      L S ++A+ D I   N +G+    NRAV +L G   ++
Sbjct: 135 DLENEVFQRERTQLELAERTALLRSFIDASPDLIYYRNEDGVFSGCNRAVEELTGKTEKE 194

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
           ++         +     +     ++ + +   T ++        +    LR +       
Sbjct: 195 LVGLTPWDVYSKEVAQQVVETDKKVFADNQALTYDQWLEYPDGRKSYFELRKVPFYSKDG 254

Query: 552 S--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                     DI+E K+ +  L       EK S  K+ F++ +SHE+RTPL  IIG S +
Sbjct: 255 RHLGLVGFGRDITERKEHQESL-------EKASRDKTTFISTISHELRTPLNGIIGLSRM 307

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           + + +          +    I  S   + +I ND++D+ K +  K+ L   P++ ++ V 
Sbjct: 308 LLDSQLTT----EQRKQMQTIKVSAVTLGNIFNDIIDMDKFDRRKLELFPTPINFEDFVV 363

Query: 670 EAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI-II 727
           E  S+  L A +K +       +++P  +  D   ++Q+  N++SNA+ FT  GG +  +
Sbjct: 364 EIESISALMAEQKGLRFDLERLSDLPSAVEVDGTRLRQVLWNLVSNAMKFTKDGGVVMTV 423

Query: 728 STTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGEGTGLGLPLAKAMV 785
           S     +   +++ V DTG+G+   E+EK    + Q+ +        GTG+GL +++ ++
Sbjct: 424 SAEIDGDFANIMMEVEDTGIGIPESEIEKIFAMYYQVKSGTDNLHAVGTGIGLAVSQQLI 483

Query: 786 DANMGKFYIFSTPAKGTLIEIIF--PLYDTSH 815
           +   G   + S    G+   +    P+   + 
Sbjct: 484 NMMDGHIEVTSEEGFGSTFTVSIRVPVNHDTQ 515



 Score = 45.8 bits (107), Expect = 0.032,   Method: Composition-based stats.
 Identities = 16/127 (12%), Positives = 35/127 (27%), Gaps = 5/127 (3%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTWYGKTTLW 150
            G     +  + +  G    +++G+   DV               +            L 
Sbjct: 174 DGVFSGCNRAVEELTGKTEKELVGLTPWDVYSKEVAQQVVETDKKVFADNQALTYDQWLE 233

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
             +G   Y   +L  +P YS++    G  GFG         + +   ++  +  +     
Sbjct: 234 YPDGRKSYF--ELRKVPFYSKDGRHLGLVGFG--RDITERKEHQESLEKASRDKTTFIST 289

Query: 211 KKGHSSV 217
                  
Sbjct: 290 ISHELRT 296


>gi|313109554|ref|ZP_07795506.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           39016]
 gi|310882008|gb|EFQ40602.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           39016]
          Length = 1417

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 112/662 (16%), Positives = 222/662 (33%), Gaps = 48/662 (7%)

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS--LTE 245
           R      A  +                  ++    D           R +  V    +  
Sbjct: 334 RQRRHREAATQARLAAIVGNSADGIIGVGLDGVISDWNRGAEALFGYREEQAVGRRVVDL 393

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
                 +  + +    +  +E  +         + +          +             
Sbjct: 394 LVPPSKENEELDILARIARKEQVVSFDTVRRHQDGHLLDVAVTVSPILGPDGGVVGASKT 453

Query: 306 RNHPSLSAYFDEGENLTPETVDK-------------------CPIP-----FFVYSHGNL 341
               S     +         ++                               +   G +
Sbjct: 454 VRDISAKKAAEARIRELNTGLEHQIAERTAELRRLNVLLGSVLQAASEVSIITLDRDGII 513

Query: 342 FYANPSFLLLTKYKSVDDIEIAGGL----STLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397
              N     +  Y++ + +  A          L A           V++ R+++    A 
Sbjct: 514 SGFNLGAERMLGYRADEVVGKASPTLLHSERELLARGQELGEEGFRVLVARAEQEG--AE 571

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
            R  T      + L++T       ++        GI  +  + R  +R+M     QL   
Sbjct: 572 TREWTYLRKDGSPLSVTLSVTVLRDEAGAINGYLGIAVDVTEWRNAEREMAAARDQLQMA 631

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFG----YPVEDILRKPFTVFLEQNTPSVMNHYL 513
            +    GI   N     L  N  + +L+G         ++ + +   L           L
Sbjct: 632 ADVARLGIWRWNLADDSLQWNERMCELYGQPLALRDGGLVYEHWRSRLHPEDLERTEASL 691

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKNKL 571
              +       +    +      + +     +++    +    +    DI+  +Q + +L
Sbjct: 692 RAAVEGRGNYDVIFRVVLPDGGIRFIQAGAQVERDADGNPLQVTGINIDITSDQQLQARL 751

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
             AK+ A+  S+ KS FLA +SHEIRTP+ A++G  ++ +        N R  +Y +   
Sbjct: 752 REAKEQADAASAAKSSFLANMSHEIRTPMNAVLGMLQLARQTDL----NERQRDYLDKAS 807

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
            +   +L ++ND+LD SKIE+GK+ L   P  L+  + +   ++     +K + +     
Sbjct: 808 SAATSLLGLLNDILDYSKIEAGKLVLEMLPFELEPLMQDLAVVLSGNQGDKDVEVIFDID 867

Query: 692 NNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH--TSNEEVILRV--RDTGV 746
             +P  ++ D   ++QI +N+  NA+ FT  G  +++S          V LRV   DTG+
Sbjct: 868 PELPSAVVGDRLRLQQILINLAGNALKFTARG-HVLVSLRRLAHDAHLVRLRVLVADTGI 926

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G++  + ++  + F Q   S   R  GTGLGL + K +VD   G+  + S P  G+    
Sbjct: 927 GISAEQQQRIFEGFTQAEASTSRRFGGTGLGLFICKRLVDLMGGELRVESAPGSGSRFWF 986

Query: 807 IF 808
             
Sbjct: 987 DL 988



 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 66/522 (12%), Positives = 141/522 (27%), Gaps = 59/522 (11%)

Query: 97  EISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTN 156
            ++E+  +       +++   +    ++         G LL        +          
Sbjct: 34  LVNEQQARMALEREAELLAEAVTRRVELYQYGLRGVRGALLTAGEAHIDRELFRR----- 88

Query: 157 LYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSS 216
                          +REF G RGFG +   RV     A   R  +         +  + 
Sbjct: 89  --------YSLTRDIDREFPGARGFGFIR--RVAAADEAGFLRQARADGQPEFRIQQLTP 138

Query: 217 VEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFH 276
            + E+Y I   +    + +      +                   LT   + +       
Sbjct: 139 HDGERYVIQYIEPVARNGQALGLDIASEANRREAARAALETGQVRLTGPITLVQASGLRQ 198

Query: 277 TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY 336
              L                +                 +     LT E +   PI     
Sbjct: 199 QSFLILMPIY----------RSGITPPPGPQRELEGFGWSYAPLLTGEVLAGLPI----- 243

Query: 337 SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA 396
                   N +      +  + D+   G           +    +   ML R +      
Sbjct: 244 -------DNAAI-----HLELSDVTGDGAAVPFFVNGAAAPAQRLFGHMLRR-EIYGRHW 290

Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
                 +    +     +      A      +    +    +  +   R+      +L +
Sbjct: 291 QMAFSALPLFVQRLHQPSPRILFLAGSLVSLLLAALVNASALGRQRRHREA-ATQARLAA 349

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS-VMNHYLTE 515
           I+  ++DGI  +  +G+I   NR    LFGY  E  + +     L   +        L  
Sbjct: 350 IVGNSADGIIGVGLDGVISDWNRGAEALFGYREEQAVGRRVVDLLVPPSKENEELDILAR 409

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKL 571
           I      Q +   T+   ++  LL + + +  +       +    T+ DIS  K  + ++
Sbjct: 410 IA--RKEQVVSFDTVRRHQDGHLLDVAVTVSPILGPDGGVVGASKTVRDISAKKAAEARI 467

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
                  E + + ++        E+R  L  ++G      ++
Sbjct: 468 RELNTGLEHQIAERTA-------ELRR-LNVLLGSVLQAASE 501



 Score = 93.9 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/404 (8%), Positives = 93/404 (23%), Gaps = 46/404 (11%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL--HIDPNNHIGDLLKRQNTWYGK 146
           +   G + + +       G    + +G R+ D+        +  + +  + +++      
Sbjct: 361 VGLDGVISDWNRGAEALFGYREEQAVGRRVVDLLVPPSKENEELDILARIARKEQVVSFD 420

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR------- 199
           T     +G  L V + ++  PI   +    G      V          A  +        
Sbjct: 421 TVRRHQDGHLLDVAVTVS--PILGPDGGVVGASK--TVRDISAKKAAEARIRELNTGLEH 476

Query: 200 ---------------LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244
                          L        E+       +                R    V   +
Sbjct: 477 QIAERTAELRRLNVLLGSVLQAASEVSIITLDRDGIISGFNLGAERMLGYRADEVVGKAS 536

Query: 245 EYYAHKDDVLKTEKYPL----------LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294
               H +  L      L             +E +   +  +   + +  +       L++
Sbjct: 537 PTLLHSERELLARGQELGEEGFRVLVARAEQEGAETREWTYLRKDGSPLSVTLSVTVLRD 596

Query: 295 NSKESFEYLSHRNHPSLSAYFDEG----ENLTPETVDKCPIPFFVYS-HGNLFYANPSFL 349
            +     YL      +     +       +      D   +  + ++   +    N    
Sbjct: 597 EAGAINGYLGIAVDVTEWRNAEREMAAARDQLQMAADVARLGIWRWNLADDSLQWNERMC 656

Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
            L        +   G +     +    ++       L  +             +  +   
Sbjct: 657 ELYGQPL--ALRDGGLVYEHWRSRLHPEDLERTEASLRAAVEGRGNYDVIFRVVLPDGG- 713

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
              +      + +     +   GI  +    +  + ++     Q
Sbjct: 714 IRFIQAGAQVERDADGNPLQVTGINIDITSDQQLQARLREAKEQ 757


>gi|254488875|ref|ZP_05102080.1| sensor histidine kinase/response regulator [Roseobacter sp. GAI101]
 gi|214045744|gb|EEB86382.1| sensor histidine kinase/response regulator [Roseobacter sp. GAI101]
          Length = 723

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 112/459 (24%), Positives = 201/459 (43%), Gaps = 25/459 (5%)

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTI-QWNRENSLAMTFIPFEKANQFPENMPQNGI 433
           L+D    +      ++R      A L    +   +++  +T    E   Q      +N  
Sbjct: 3   LADKLTQERRGRLAAERMLELKQAELFAANRKLGQHAQRLTNEIVETRAQVETIRDEN-- 60

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
           +    D    + K+E+   +L   +E   DG A  N    ++  NRA   +F        
Sbjct: 61  QRVKSDLTAAREKIELTERRLWQSIETIKDGFAFFNANNEMIMANRAYLAIFDGLEIICP 120

Query: 494 RKPFTVFLEQNTPSVM-------NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
              +   L+  T   +             +++  L+ T  + T+      + + L   I 
Sbjct: 121 GVNYVTILQVLTDEGIVNTGNLCPKSWRRLMTERLQDTAPEPTVIHLWNGQHIKL---ID 177

Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
           +   S        DI+   + + +L  A  IAE  +  KS FLA +SHEIRTP+  ++G 
Sbjct: 178 QRSPSGDMVSLGLDITATVEYERQLQEAHSIAESANRAKSAFLANMSHEIRTPMNGVVGM 237

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
           ++V+++             Y + I  SG  +L I+ND+LD SKIE+ K++LH EP  L+ 
Sbjct: 238 ADVLRDTDL----TEDQRLYVDTIKNSGEALLVIINDVLDYSKIEAKKLDLHPEPFDLER 293

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI 725
           A+ E I L+Q  A EK + +   +   +P  ++ D   ++Q+  N+L NA+ FT  G  +
Sbjct: 294 AIQEVIMLLQPLAREKGLEMALDYDLFMPTTLVGDPGRIRQVLTNLLGNAVKFTSDGHVL 353

Query: 726 IISTTHTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           +  T     E    +V + + DTG+G+    ++     F Q+ N +  + +GTGLGL ++
Sbjct: 354 VRVTGVPDKETGKVQVNIAIEDTGIGIAPDMVDHIFGEFNQVENERNRKFDGTGLGLAIS 413

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPLY---DTSHPH 817
           + ++    G  ++ S    G+      PL    + + PH
Sbjct: 414 QRLIQMMEGDIWVTSEEQAGSCFGFKLPLEAHGEITTPH 452


>gi|316931476|ref|YP_004106458.1| PAS/PAC sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris DX-1]
 gi|315599190|gb|ADU41725.1| PAS/PAC sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris DX-1]
          Length = 837

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 124/710 (17%), Positives = 243/710 (34%), Gaps = 43/710 (6%)

Query: 121 VSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN----REFS 176
           +     +  ++ +  LL +   +  +        T+    I+     +  +     RE S
Sbjct: 155 LPPEPALQMDHAVDALLDKGEGFLLQLV------TSNGRSIEAMGRAVGGQAVVRIRELS 208

Query: 177 GFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM 236
           G R                  +   +                +    +    +       
Sbjct: 209 GVR-----RELADMTRRFKALQEETEMLRGFATAAPWPIWTRRADGTLSFANAAYARATD 263

Query: 237 KNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS 296
            +  +          D            + +    +     I +    +      L+   
Sbjct: 264 ASDAADAIGRNLELLDTGDRAALARSLGDSAEFTGRLP---IVVGGERRYFDVRALKVPG 320

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYK 355
             +   +      +L    +   +    T+D+      V+     L + N S+  L    
Sbjct: 321 GSAGIAVDATETAALGVALERMADAHRRTLDQLSSGVAVFDAQRRLKFYNDSYRKLWD-- 378

Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA---RLHTIQWNRENSLA 412
                     L  +       D+  +  +   R         A   +LH      E    
Sbjct: 379 ----------LDRIFLDSHPDDSTVLDRLRAERKLPEERDFKAWKNKLHEAYRAVEADKD 428

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL----CSILEATSDGIAII 468
           + ++P  +A          G      D       ++     L       L+  S+ +A+ 
Sbjct: 429 VWYLPDGRAVSIVTTPNPEGGVTYLFDDVTESLDLKRRYGGLIDVQRETLDNLSEAVAVF 488

Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH-YLTEILSLDLRQTLEK 527
              G     N    +++    E +  +P    +E     + +     + L   +    ++
Sbjct: 489 GSNGCAQLFNPPFVRMWNLSAEAMQSQPHIEAIETWCRPLFDDDVFWQALRGAITGIDDR 548

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
             +    E K  S+              LT  D+++ +  +  L    +  E     K D
Sbjct: 549 RHVLLKLERKDGSVLACKTMPLPDGATMLTFQDLTDTENVERALRERNEALETADRIKID 608

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           F+  VS+E+R+PLT IIGF+  + +   GPL + +  EY NYI  S N ++ I+N++LD+
Sbjct: 609 FVHHVSYELRSPLTTIIGFAHFLSDSSTGPLTD-KQAEYVNYITTSTNALMAIINNILDL 667

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707
           + I++G M L+  P+ + +A+  A   +Q      +I ++      I R + D R V Q+
Sbjct: 668 ASIDAGAMTLNLGPIDIRKAIDAAAEGIQDRLARDQIALQVDVDPEIDRFVGDERRVVQV 727

Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
             N+L+NA+ F+P  G + ++        V   V D G G+     ++    F    + Q
Sbjct: 728 LYNLLANAVDFSPPQGTVRLTVR-RGETRVAFTVADAGPGIAPAFKDRMFDLFE--SDPQ 784

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
             R  G GLGL L ++ V+ + GK  + ST  +GT +   FPL  ++  H
Sbjct: 785 GSRHRGAGLGLSLVRSFVELHGGKVEVESTVGRGTSVTCEFPLEQSAQRH 834



 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 46/385 (11%), Positives = 98/385 (25%), Gaps = 39/385 (10%)

Query: 86  TWNIDAHGYLKEISEEL-PKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144
            W   A G L   +      T  + A   IG  L        +D  +         ++  
Sbjct: 242 IWTRRADGTLSFANAAYARATDASDAADAIGRNLE------LLDTGDRAALARSLGDS-A 294

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
             T   PI         D+ AL +        G  G  +              +R+    
Sbjct: 295 EFTGRLPIVVGGERRYFDVRALKVPG------GSAGIAV--DATETAALGVALERMADAH 346

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
               +      +V   +  +          ++ +      + +     VL   +      
Sbjct: 347 RRTLDQLSSGVAVFDAQRRLKFYNDSY--RKLWDLDRIFLDSHPDDSTVLDRLRAERKLP 404

Query: 265 EESSLPE-----QEDFHTINL-------NQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
           EE           E +  +                   T       ++ +        L 
Sbjct: 405 EERDFKAWKNKLHEAYRAVEADKDVWYLPDGRAVSIVTTPNPEGGVTYLFDDVTESLDLK 464

Query: 313 AYFDEGENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
             +    ++  ET+D       V+ S+G     NP F+ +    S + ++    +  +  
Sbjct: 465 RRYGGLIDVQRETLDNLSEAVAVFGSNGCAQLFNPPFVRMWNL-SAEAMQSQPHIEAIET 523

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
             +   ++ +    L  +          L  ++    + LA   +P              
Sbjct: 524 WCRPLFDDDVFWQALRGAITGIDDRRHVLLKLERKDGSVLACKTMPLPDGA-------TM 576

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCS 456
               +  DT   +R +      L +
Sbjct: 577 LTFQDLTDTENVERALRERNEALET 601



 Score = 43.1 bits (100), Expect = 0.21,   Method: Composition-based stats.
 Identities = 35/351 (9%), Positives = 78/351 (22%), Gaps = 25/351 (7%)

Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
            +  T      +   ++        +  L    + +    +   +   F  +S       
Sbjct: 21  GLAGTAVMVASSPARAADDHLAVITSSLLLDLNRHEMMTLIIALAALGFSVMSAIMLVRT 80

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
                  E      +              L +A P  L+     + D      G + L  
Sbjct: 81  RQRAAAREAGLRADLQGLQA--ESDRFQALLFAEPQVLISW--IAGDSRPRISGDTALFL 136

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASAR--LHTIQWNRENSLAMTFI----------PFE 419
             +       + +          A      +  +    E  L                  
Sbjct: 137 PAEPQSRQPQRILAFGTWLPPEPALQMDHAVDALLDKGEGFLLQLVTSNGRSIEAMGRAV 196

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
                      +G+  E  D     + ++ E   L     A    I     +G +   N 
Sbjct: 197 GGQAVVRIRELSGVRRELADMTRRFKALQEETEMLRGFATAAPWPIWTRRADGTLSFANA 256

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
           A ++                 L+    + +   L      D  +   ++ +    E +  
Sbjct: 257 AYARATDASDAADAIGRNLELLDTGDRAALARSL-----GDSAEFTGRLPIVVGGERRYF 311

Query: 540 SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
            +R +          +    D +E       L        +     S  +A
Sbjct: 312 DVRALKVP----GGSAGIAVDATETAALGVALERMADAHRRTLDQLSSGVA 358


>gi|89519332|gb|ABD75809.1| hypothetical protein [uncultured bacterium]
          Length = 800

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 125/768 (16%), Positives = 278/768 (36%), Gaps = 74/768 (9%)

Query: 60  ESVSNTNYLDSENTFVFDPIPRTVRF-TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRL 118
              + T  L   + F+   +  +  +        G +   ++   + IG  A +++    
Sbjct: 89  RLETETEKLQETSDFLNSILDSSTEYSIITTGKDGKITLFNKGAERMIGYAADEIVHKEP 148

Query: 119 CDVSDILHIDPN-NHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSG 177
             +      + +   +G  + +     G+  +   +G +L V   +   P+  RN +  G
Sbjct: 149 PTLFLRSPSNKSFAQVGMQIMKYGVDEGEWEVIRKDGQSLRVIFTM--TPMRDRNGKMLG 206

Query: 178 FRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK 237
           F G  I              +   +    + E +      +  + D           +  
Sbjct: 207 FLG--IAKDVTEQKKLERQLQDYTENLEKIVEHRTEELERKNVELD--------DERQTA 256

Query: 238 NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297
              +   +        + +           +    E         +  K+    LQ    
Sbjct: 257 ENRAKELDMINKLSQAISSTIELEEVLGIGAERVVELLRLTQSRLFLLKEGSEELQILY- 315

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSV 357
           +  +     +  ++SA      +         P+                    +    V
Sbjct: 316 KYDKTTQQSDLNNVSAPLSRYPDFLRAITTTQPVVI------------DDVQKSSMAPEV 363

Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR-SDRTCIAASARLHTIQWNRENSLAMTFI 416
             +    G+S++++ P LS + AI  +ML    D    +                     
Sbjct: 364 KKVFEKQGVSSIMNLPLLSKDGAIGIMMLLHTGDPRNFSVE------------------- 404

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476
                 +   +     ++   +   + +     E  ++ +++ ++SDGI + +++  ++ 
Sbjct: 405 -DLNLAETASSQLAVALKNAQLFRHVVE-----EKGRIEALVNSSSDGIVMTDKQFHLIL 458

Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQN-----TPSVMNHYLTEILSLDLRQTLEKITLG 531
            N    +LF       L K    F+++         ++   + +I++    + +E+ +L 
Sbjct: 459 INAVAERLFQINANQFLEKHLVEFVDEQKDNLKDFDLVKQVVYQIVTSPEDRVVEEFSLL 518

Query: 532 STKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
           +  +   L    ++ +      + L +HDI++ K+ +                + D ++ 
Sbjct: 519 NPPKTLKLIGNPVLGEKDEVIGHMLVLHDITQEKRLE--------------QMRDDLVSM 564

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           + H+++ PL  +IGF+E++  +         +  +   I    N + ++VN++L++ K+E
Sbjct: 565 IVHDLKNPLAGVIGFAEIMSVKMKKRDDMEDFENFLTKILYQANTLHEMVNNILEVHKME 624

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
            G M L  +  +L   ++ +I  V++ A +K I I T   + +P +  D   + ++  NI
Sbjct: 625 DGSMELQKDVSNLQTIITNSIHQVEMSAKQKDISITTDLPDPLPPVFVDHTKIVRLFANI 684

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           +SN I +TP  G I IS     + E++  + DTG G+    LE     F QI   +Q + 
Sbjct: 685 MSNGIKYTPEQGNIHISVKVQDD-EILTGISDTGKGIPLEYLETIFDRFAQIDRKKQGKA 743

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP-LYDTSHPHD 818
              GLGL   K +V+++ GK +  S   KG+     FP L   S   D
Sbjct: 744 ASVGLGLYFCKLVVESHGGKIWAESELGKGSTFFFTFPNLLSASKEED 791



 Score = 84.3 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 72/188 (38%), Gaps = 9/188 (4%)

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD-GIA 466
           +N   +      +  +  E      ++           K++     L SIL+++++  I 
Sbjct: 58  QNVFRLVQSRVSRTERILEANYSKELQEYTKRLETETEKLQETSDFLNSILDSSTEYSII 117

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRK-PFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
              ++G I   N+   ++ GY  ++I+ K P T+FL   +         +I+        
Sbjct: 118 TTGKDGKITLFNKGAERMIGYAADEIVHKEPPTLFLRSPSNKSFAQVGMQIMKYG---VD 174

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKE 581
           E       K+ + L +   +  +   +     +     D++E K+ + +L    +  EK 
Sbjct: 175 EGEWEVIRKDGQSLRVIFTMTPMRDRNGKMLGFLGIAKDVTEQKKLERQLQDYTENLEKI 234

Query: 582 SSHKSDFL 589
             H+++ L
Sbjct: 235 VEHRTEEL 242


>gi|86160736|ref|YP_467521.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85777247|gb|ABC84084.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 461

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 81/254 (31%), Positives = 136/254 (53%), Gaps = 2/254 (0%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E + +  KL  +    ++    KS+FLA +SHE+RTPLT++IG+SE++     GPL    
Sbjct: 197 ELQDKNQKLEDSYAKLKELDRLKSNFLATMSHELRTPLTSVIGYSEMMLEGLGGPLTAE- 255

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             EY   I   G  +L ++  +LDISKIE+G++ L    V   + + +A++ +   A +K
Sbjct: 256 QREYLGIIMEKGENLLQLITSILDISKIEAGRVRLVLSEVDAVQLMRDAVATLLPIARKK 315

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
            + +    +  +PRI AD   ++Q  +N+ SNA+ FTP GG I ++      E + + V 
Sbjct: 316 GLKVSCDPSP-LPRIHADRDKLRQCLVNLCSNAVKFTPPGGSITVNAEVLQGERLAIHVV 374

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D+G+G+    L K    F Q+  S      G GLGL + K+ V+A+ G+  + S    G+
Sbjct: 375 DSGIGIPEEHLAKVFDVFYQVDGSSTREYGGAGLGLAIVKSFVEAHGGEIRVRSAAGTGS 434

Query: 803 LIEIIFPLYDTSHP 816
           +  ++ P+  T  P
Sbjct: 435 IFTVLLPIRATPAP 448


>gi|28377005|ref|NP_783897.1| histidine protein kinase; sensor protein [Lactobacillus plantarum
           WCFS1]
 gi|254555221|ref|YP_003061638.1| histidine protein kinase; sensor protein [Lactobacillus plantarum
           JDM1]
 gi|300769136|ref|ZP_07079025.1| histidine protein kinase; sensor protein [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
 gi|28269836|emb|CAD62733.1| histidine protein kinase; sensor protein [Lactobacillus plantarum
           WCFS1]
 gi|254044148|gb|ACT60941.1| histidine protein kinase; sensor protein [Lactobacillus plantarum
           JDM1]
 gi|300493376|gb|EFK28555.1| histidine protein kinase; sensor protein [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
          Length = 624

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 82/410 (20%), Positives = 166/410 (40%), Gaps = 34/410 (8%)

Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465
             + +  +     ++  Q  + +    I  E+          E E  +L S+L   SDG+
Sbjct: 227 RGDYAGQVRVYSDDELGQLAKAINNLSIRVEESQEST-----EAERRRLDSVLSHMSDGV 281

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR-QT 524
              +R G I   N   S       E  +       L+      +   +     L L   +
Sbjct: 282 IATDRRGNITIINETASDFMDVTAEKAIGNSILDILKIRDDYSLRDLIENQDELMLDFSS 341

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
            E+  + +          +I ++  F S     +HD++E ++  N               
Sbjct: 342 NERDLILNA------YFSLIQRESGFISGLVCVLHDVTEQQKIDND-------------- 381

Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
           +  F++ VSHE+RTPLT++  + E + +  +          +        + ++ ++N+L
Sbjct: 382 RKQFVSNVSHELRTPLTSLRSYIEALSDGAW--KDPEVAPGFLKVTQEETDRMIRMINEL 439

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE-----KRILIRTSFANNIPRILA 699
           L +S+++SG   +  E V+++E  +  +    +   +     K   I+  F      +  
Sbjct: 440 LSLSRMDSGTTRVDMELVNINEMFNYVLDRFDMILKKDDNPAKYYTIKREFTKRDLWVEI 499

Query: 700 DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKP 759
           D     Q+  NI++NAI ++P GG +       ++ +VI+ + D G+G+   +L      
Sbjct: 500 DTDKFTQVLDNIMNNAIKYSPDGGVVTCRL-LETHNQVIISISDQGLGIPRADLGHVFDR 558

Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           F ++  ++     GTGLGL ++K +V    G+ ++ S   KG+   I  P
Sbjct: 559 FFRVDKARSRAQGGTGLGLAISKEVVQMLGGRIWVDSVEGKGSTFYISLP 608


>gi|193215882|ref|YP_001997081.1| PAS/PAC sensor signal transduction histidine kinase [Chloroherpeton
            thalassium ATCC 35110]
 gi|193089359|gb|ACF14634.1| PAS/PAC sensor signal transduction histidine kinase [Chloroherpeton
            thalassium ATCC 35110]
          Length = 1791

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 114/756 (15%), Positives = 230/756 (30%), Gaps = 81/756 (10%)

Query: 102  LPKTIGNYAFKMIGMRLCD--VSDILHIDPNNHIGDLLKRQ-NTWYGKTTLWPIEGTNLY 158
              K  G+   +       +  ++ I   D       L K +             +     
Sbjct: 1073 YAKITGSSPGE---SGWREKLLNMIFPADQALFTQHLQKARSGQKSKVEVRILSKNREQR 1129

Query: 159  VPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVE 218
              +     PI+         R  G +          A  K   KK+  L E      +  
Sbjct: 1130 -WLRDYIKPIF-EPGTGKLIRLVGAMQDITERKWAEAAMKESSKKYRLLAENSSDVIATL 1187

Query: 219  KEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES--------- 267
             +  +          L      +V  +T      +D  +       +  E          
Sbjct: 1188 DKNLNFTYISPAVRRLLGYEPEEVLRMTPEDLLTEDSYRMAMKEYASRMEKMRYGQMWLY 1247

Query: 268  SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN----HPSLSAYFDEGENLTP 323
               E+ +    +      +     L ++  +   +L+            A     E    
Sbjct: 1248 DFREEIELKRKDGLTVFAEYISTPLLDSDGQLIGFLTTARNITKRKHAEAALRLSEEKFS 1307

Query: 324  ETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
            +     P    +     G    AN +FL +T Y   + +    G +       LS     
Sbjct: 1308 KAFRSSPDAMMIMRLSDGVYIDANDAFLEITGYSRDEVM----GRTAFELGIWLSSKERE 1363

Query: 382  KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
            + + L +  +      A    +  + E                P       I  +    +
Sbjct: 1364 RLISLLKQYKFVRNFEAPY--VIKSGEPRFCQLSAEIIDIKGEP---HIITIARDVTQKK 1418

Query: 442  INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
              + K+  +     S+LE   + + + + EG +   N     ++ +   +++ K     L
Sbjct: 1419 RIEEKIYFQ----ASLLEQVRNIVFVTDMEGRVTYWNHFAEIVYQWTSSEVVGKNAIDLL 1474

Query: 502  EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLT 557
                   +   L        +   E       K+ +       +  L             
Sbjct: 1475 VPKAEQPLATKL--YFHALEKGYWEGEQQLMRKDGRAFPCFCAVTLLKDPEGKNIGVIRV 1532

Query: 558  MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
              D+SE ++ + +L  A+K+              V+H+    LTA++G +E+++ +  G 
Sbjct: 1533 GTDVSERRELEEQLRQAQKM-----EAVGRLTGGVAHDFNNLLTAVLGNAEILEKKLTG- 1586

Query: 618  LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
              N   ++    I  S     ++   LL  S+ + G       PV +++ +   I L++ 
Sbjct: 1587 --NEFVLKNIERIKASATRGSELTRKLLTFSRQKKGFSK----PVQINKCIENVIGLMEH 1640

Query: 678  YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT------PSGGQIIISTTH 731
              + KRI + TS  +    ++ D   ++ + LN+  NA             G++   T  
Sbjct: 1641 TID-KRIDVLTSLCSENLVVMGDENQLEMVLLNLAVNASDAMSPVLDMKKEGKLCFETRI 1699

Query: 732  T--------------SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
                           +   V + V DTG G+ +   +K  +PF    + +     GTGLG
Sbjct: 1700 EKISKTFAEQHQLELAQSYVRISVSDTGTGIPDEIRQKIFEPFFTTKDIES----GTGLG 1755

Query: 778  LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
            L +    V ++ G   + S    G+   I  P Y +
Sbjct: 1756 LAITYGAVKSHRGAILLESEVGVGSTFHIYLPRYKS 1791



 Score =  146 bits (368), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 65/548 (11%), Positives = 159/548 (29%), Gaps = 42/548 (7%)

Query: 59  QESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRL 118
           Q ++     +++    +FD     +      D +G + + +    + +G    ++  + +
Sbjct: 2   QNALPKLQPVENGLGSIFDGADEALILH---DFNGKIIDGNRSACEQLGYTKAELRQLSI 58

Query: 119 CDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGF 178
            DV+        +    L++++   + + +    EG    +PI+++ L + +     +G 
Sbjct: 59  KDVASSRFYQFFHERVSLVRQKGFAFFEASHITKEG--KEIPIEVSCLLMAN-----NGE 111

Query: 179 RGFGI-VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSS--VEKEKYDIFSQQS------ 229
               +         D   +        S + E+        V  E   I    +      
Sbjct: 112 PAILVSARDISDRKDAERVRTESAFIQSTISELVSDFIFKNVMHEDGTIEPIWTVGAMKK 171

Query: 230 -PPPHLRMKNKVSSLTEYYAHKDDVLKTEKY-PLLTSEESSLPEQEDFHTINLNQYTKKQ 287
                L     + +      H DDV K E     + S E    E   F+          +
Sbjct: 172 CTGFSLEELKALPNGWHSILHPDDVAKVESVLKKILSNEKIYHEYRIFYAATEEVRWVGE 231

Query: 288 YFGTLQNNSKES-----FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-L 341
           +   + ++ K+          +        + F E       T +      F+ +    L
Sbjct: 232 HIHPVWDDEKQRVTAFYGAVQNITEKKQAESAFREATLWLKSTFNALDAAIFIATADRKL 291

Query: 342 FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401
              N S   +  Y   + +   G  S  L   +       K +                 
Sbjct: 292 VDMNKSAERMFGYSRQELL---GLSSEHLHVDRAHFIAFGKRLQRSFKRGETARFE---F 345

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
             +           +         + +    +  +  + R  +  +     +   + E +
Sbjct: 346 EWKRKNGEIFPTEHVVTSLVQDDGKLLGILSVVRDISERRRAEIAIRESERKYRLLAENS 405

Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL---- 517
           SD I + ++   I   + +  +L G+ + + L   F   L   +                
Sbjct: 406 SDIIVMFDKNFRITYASPSAERLTGFSMAEALAMQFKDVLTPESFQKSMQIFHARRTMFS 465

Query: 518 -SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNKLS 572
            S  +   +        K+        I+  +         + +T+ DIS+ K+ ++ L 
Sbjct: 466 NSRGMNYEVRMELQHVRKDGSTFWAEDILMPIWNEHHLLDGFLVTVRDISDRKKAEDSLR 525

Query: 573 HAKKIAEK 580
            ++     
Sbjct: 526 ESEANLSA 533



 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 61/528 (11%), Positives = 143/528 (27%), Gaps = 34/528 (6%)

Query: 86   TWNIDAHGYLKEISEELPKTIG--NYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTW 143
             W++D +  L   +    +           IG     V  I   +        +  +   
Sbjct: 542  VWSVDQNYNLIVANVIFHEKFKSQFGVDLKIGES---VLPIEVPERLRKKWRSIYNKALR 598

Query: 144  YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
              +  +   +G      ID    PI +   E  G    G           R L +     
Sbjct: 599  GDRFRIQRKQGKEAQEYIDYLFNPIKTATGEVVGTTISG--RDVTELIQARQLLEAESSF 656

Query: 204  FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
               +        SV  +  D    +    + +M        +       +        L 
Sbjct: 657  RHSIITSLSEGLSVCHDIDDAPFMKFTIWNDQMGKITGYTKDEINRTGWLFSLYPEKALQ 716

Query: 264  SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE--------------YLSHRNHP 309
             +     +Q       L++  +  +    +     S                 L      
Sbjct: 717  EKVQQRIQQMRNGQDVLHEEWEITHASGQKRTVLISMSLLHTNDGKQHFLSLMLDITERK 776

Query: 310  SLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
                   E +N          +  + ++   G + + +P   +L  Y+  D         
Sbjct: 777  QTERALFESQNRYRVATFAGKVGVWDWNVQTGEI-FVDPHLKILLGYEEQDLSNHIDAWR 835

Query: 368  TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
             ++ +  L+         +   +               +   ++           +  E 
Sbjct: 836  VIIPSEDLALIEKSIEQHI---ENRTPHFEIAHRMFNKDG--TVRWFLRRGYAVRKKGEV 890

Query: 428  MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
            +   G + +  + +  +  + +    L  I +A   GI   +R  I+   N  + ++ GY
Sbjct: 891  VRIVGTDTDITERKRVEESLTVREATLQGIFKAAQVGI-GFSRRQILQEANDMLCQILGY 949

Query: 488  PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
              E+++ +    F        +     +   ++          G  K+  ++ L + I  
Sbjct: 950  QKEEMIGQHVKCFYSTE-EEFVRVEKKKREQIEKYGASNVEMKGRCKDGTIIDLMLSIAP 1008

Query: 548  LPF---SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
            +     +     T  DI++ K  +  L  ++      S   SD++  V
Sbjct: 1009 IRPKSIADGVIFTALDITQRKISETALRESEARYRTVSELMSDYIYSV 1056



 Score = 93.9 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/357 (10%), Positives = 100/357 (28%), Gaps = 29/357 (8%)

Query: 293 QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF---VYSHGNL--FYANPS 347
                         +         E   +     +      F   ++  G +   +   +
Sbjct: 109 NGEPAILVSARDISDRKDAERVRTESAFIQSTISELVSDFIFKNVMHEDGTIEPIWTVGA 168

Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLS--DNNAIKPVMLYRSDRTCIAASARLHTIQW 405
               T +   +   +  G  ++L    ++  ++   K +   +         A    ++W
Sbjct: 169 MKKCTGFSLEELKALPNGWHSILHPDDVAKVESVLKKILSNEKIYHEYRIFYAATEEVRW 228

Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465
             E+   +        ++        G      + +  +       + L S   A    I
Sbjct: 229 VGEHIHPVW------DDEKQRVTAFYGAVQNITEKKQAESAFREATLWLKSTFNALDAAI 282

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF-LEQNTPSVMNHYLTEILSLDLRQT 524
            I   +  ++  N++  ++FGY  +++L        +++         L           
Sbjct: 283 FIATADRKLVDMNKSAERMFGYSRQELLGLSSEHLHVDRAHFIAFGKRLQRSFKRGETAR 342

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEK 580
            E       K  ++     ++  L             + DISE ++ +  +  +++    
Sbjct: 343 FEFE--WKRKNGEIFPTEHVVTSLVQDDGKLLGILSVVRDISERRRAEIAIRESERKYRL 400

Query: 581 ESSHKSDFLARVSHEIR----TP----LTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
            + + SD +       R    +P    LT     +E +  Q    L    + +    
Sbjct: 401 LAENSSDIIVMFDKNFRITYASPSAERLTG-FSMAEALAMQFKDVLTPESFQKSMQI 456



 Score = 91.2 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 34/381 (8%), Positives = 108/381 (28%), Gaps = 24/381 (6%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID----PNNHIGDLLKRQNTW- 143
            +D +     IS  + + +G    +++ M   D+                 + ++    W 
Sbjct: 1187 LDKNLNFTYISPAVRRLLGYEPEEVLRMTPEDLLTEDSYRMAMKEYASRMEKMRYGQMWL 1246

Query: 144  ---YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
                 +  L   +G  L V  +  + P+   + +  GF                A  +  
Sbjct: 1247 YDFREEIELKRKDG--LTVFAEYISTPLLDSDGQLIGF--LTTARNITKRKHAEAALRLS 1302

Query: 201  DKKFSHLHEIKKGHSSVEK-EKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
            ++KFS           + +               +   ++   +          L +++ 
Sbjct: 1303 EEKFSKAFRSSPDAMMIMRLSDGVYIDANDAFLEITGYSRDEVMGRTAFELGIWLSSKER 1362

Query: 260  PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY--LSHRNHPSLSAYFDE 317
              L S         +F    + +  + ++            E   ++     +     +E
Sbjct: 1363 ERLISLLKQYKFVRNFEAPYVIKSGEPRFCQLSAEIIDIKGEPHIITIARDVTQKKRIEE 1422

Query: 318  GENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
                    +++     FV    G + Y N    ++ ++ S + +     +  L+   +  
Sbjct: 1423 KIYFQASLLEQVRNIVFVTDMEGRVTYWNHFAEIVYQWTSSEVV-GKNAIDLLVPKAEQP 1481

Query: 377  DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
                +    L +              ++ +   +           +   +N+    +  +
Sbjct: 1482 LATKLYFHALEKG-----YWEGEQQLMRKDG-RAFPCFCAVTLLKDPEGKNIGVIRVGTD 1535

Query: 437  DVDTRINKRKMEIEVMQLCSI 457
              + R  + ++  +  ++ ++
Sbjct: 1536 VSERRELEEQLR-QAQKMEAV 1555



 Score = 75.4 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 54/153 (35%), Gaps = 6/153 (3%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           K++     L SI +   + + + +  G I+  NR+  +  GY   ++ +           
Sbjct: 7   KLQPVENGLGSIFDGADEALILHDFNGKIIDGNRSACEQLGYTKAELRQLSIKDVASSRF 66

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII--IKKLPFSSCYSLTMHDISE 563
               +  ++ +                TKE K + + +   +          ++  DIS+
Sbjct: 67  YQFFHERVSLVRQKGFAF---FEASHITKEGKEIPIEVSCLLMANNGEPAILVSARDISD 123

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFL-ARVSHE 595
            K  +   + +  I    S   SDF+   V HE
Sbjct: 124 RKDAERVRTESAFIQSTISELVSDFIFKNVMHE 156



 Score = 47.7 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/119 (11%), Positives = 33/119 (27%), Gaps = 9/119 (7%)

Query: 86   TWNIDAHGYLKEISEELPKTI-GNYAFKMIGMRLCDVSDILHIDPNNHIG--DLLKRQNT 142
             +  D  G +   +    + +    + +++G    D+       P         L++   
Sbjct: 1438 VFVTDMEGRVTYWNH-FAEIVYQWTSSEVVGKNAIDLLVPKAEQPLATKLYFHALEKG-Y 1495

Query: 143  WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
            W G+  L   +G     P   A   +     +  G    G         +     ++  
Sbjct: 1496 WEGEQQLMRKDGRAF--PCFCAVTLLKDPEGKNIGVIRVGT--DVSERRELEEQLRQAQ 1550


>gi|300866501|ref|ZP_07111191.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300335458|emb|CBN56351.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 795

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 127/767 (16%), Positives = 254/767 (33%), Gaps = 67/767 (8%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            W  ++ G     + +  +  G    + +G    +       D             T   
Sbjct: 50  IWTANSDGAATYFNSQWEEYTGVPQTEALGFGFLNFIHPEDRDRTIISMQQALTHKT-SY 108

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRG-------FGIVHVNRVDND----PR 194
           +     ++   +Y  +   A P+ + N E   + G       F     ++   +      
Sbjct: 109 EIEFRLLQECGVYGWVMAKASPVTADNGEVKEWVGTYTDIDHFKTTQGSQEITETPPKLP 168

Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254
             G     + S +       ++  +    +                       A     +
Sbjct: 169 EEGVYFLAQASAILSASLDVNTTLENLAKLIVPYFADWCAINITNSEGECRTIAVAHAEM 228

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
             E           +     +H +   +         + +       Y         S  
Sbjct: 229 AKESLVWELQRHYPVGADGVYHYLQPLRTGVVDACFEVADAQLARVAYDDRHLRLLRSLC 288

Query: 315 FDEGE----NLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
           F         L   T        FV       Y N +  L         I +   L  L 
Sbjct: 289 FRSYLCLPIRLGSRTFGSI---LFVRDQTGHLYTNATLTLAEDLARRAAIALEKAL--LY 343

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI----QWNRENSLAMTFIPFEKANQFPE 426
              +    +  + + +    +  +    RL  +      +  + L +       A    +
Sbjct: 344 QEAQKRGEDLRQALSILDEHQQQLRTLQRLTNLLNQRVRDLRSLLQVMVDAVVSAIAGAQ 403

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
                  +P+D    +               +E    G      E +    +R + ++F 
Sbjct: 404 FCLIVLSDPDDNQLNLTAAAGRG--------IENLPIG------EPLCTIWDRLLLRVFV 449

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL-----SL 541
               +++R+  TV           + +   +       L  I +G+             L
Sbjct: 450 TGHSELMRRDLTVEDLHEEFPAAIYAV--AIESASAGRLGTIAIGNWDNTNAFNPEAQQL 507

Query: 542 RIIIK--------------KLPFSSCYS-----LTMHDISEWKQEKNKLSHAKKIAEKES 582
            + +                L            + +    E + ++  +        + +
Sbjct: 508 LMAVGKQAAIAINNAQLIKALEKREELLETQNQILLRQNQELESQRQHIELQNLQLLEAA 567

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
             KS FL+ VSHE+RTP+ AIIGFSE++  QR  P+ N + I+    I ++G  +L ++N
Sbjct: 568 RLKSHFLSTVSHELRTPMNAIIGFSELLLRQRQPPI-NSQQIDMVQRILKNGKNLLMLIN 626

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702
           ++LD+S+IE+G+  L  E   L   V        + ANEK + +      + P I+ D  
Sbjct: 627 NILDLSRIEAGRTELEIEEFDLTNLVLCTALDFGIIANEKILSMSVYIYLDNPCIVNDKS 686

Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
            ++Q+ +N+LSNA+ FT  G  I I  +  S +++++ +RDTG+G+   ++    + F Q
Sbjct: 687 RLRQVLVNLLSNAVKFTERGS-IYIHVSELSADKLLIEIRDTGIGIAETQIPHIFEKFRQ 745

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +  + + +  GTGLGL +  ++V+   GK  + S   KG+   +  P
Sbjct: 746 VDQTTKRKYPGTGLGLAITASLVNLMKGKIKVESEVGKGSSFRLELP 792



 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/116 (13%), Positives = 31/116 (26%), Gaps = 6/116 (5%)

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           +  A    I   N +G     N    +  G P  + L   F  F+           + + 
Sbjct: 42  LFNALPQIIWTANSDGAATYFNSQWEEYTGVPQTEALGFGFLNFIHPEDRDRTIISMQQA 101

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEK 568
           L+       E       +      +      +   +     +  T  DI  +K  +
Sbjct: 102 LTHKTS--YEIEFRLLQECGVYGWVMAKASPVTADNGEVKEWVGTYTDIDHFKTTQ 155


>gi|296387332|ref|ZP_06876831.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           PAb1]
          Length = 1417

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 112/662 (16%), Positives = 222/662 (33%), Gaps = 48/662 (7%)

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS--LTE 245
           R      A  +                  ++    D           R +  V    +  
Sbjct: 334 RQRRHREAATQARLAAIVGNSADGIIGVGLDGVISDWNRGAEALFGYREEQAVGRRVVDL 393

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
                 +  + +    +  +E  +         + +          +             
Sbjct: 394 LVPPSKENEELDILARIARKEQVVSFDTVRRHQDGHLLDVAVTVSPILGPDGGVVGASKT 453

Query: 306 RNHPSLSAYFDEGENLTPETVDK-------------------CPIP-----FFVYSHGNL 341
               S     +         ++                               +   G +
Sbjct: 454 VRDISAKKAAEARIRELNTGLEHQIAERTAELRRLNVLLGSVLQAASEVSIITLDRDGII 513

Query: 342 FYANPSFLLLTKYKSVDDIEIAGGL----STLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397
              N     +  Y++ + +  A          L A           V++ R+++    A 
Sbjct: 514 SGFNLGAERMLGYRADEVVGKASPTLLHSERELLARGQELGEEGFRVLVARAEQEG--AE 571

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
            R  T      + L++T       ++        GI  +  + R  +R+M     QL   
Sbjct: 572 TREWTYLRKDGSPLSVTLSVTVLRDEAGAINGYLGIAVDVTEWRNAEREMAAARDQLQMA 631

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFG----YPVEDILRKPFTVFLEQNTPSVMNHYL 513
            +    GI   N     L  N  + +L+G         ++ + +   L           L
Sbjct: 632 ADVARLGIWRWNLADDSLQWNERMCELYGQPLALRDGGLVYEHWRSRLHPEDLERTEASL 691

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKNKL 571
              +       +    +      + +     +++    +    +    DI+  +Q + +L
Sbjct: 692 RAAVEGRGNYDVIFRVVLPDGGIRFIQAGAQVERDADGNPLQVTGINIDITSDQQLQARL 751

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
             AK+ A+  S+ KS FLA +SHEIRTP+ A++G  ++ +        N R  +Y +   
Sbjct: 752 REAKEQADAASAAKSSFLANMSHEIRTPMNAVLGMLQLARQTDL----NERQRDYLDKAS 807

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
            +   +L ++ND+LD SKIE+GK+ L   P  L+  + +   ++     +K + +     
Sbjct: 808 SAATSLLGLLNDILDYSKIEAGKLVLEMLPFELEPLMQDLAVVLSGNQGDKDVEVIFDID 867

Query: 692 NNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH--TSNEEVILRV--RDTGV 746
             +P  ++ D   ++QI +N+  NA+ FT  G  +++S          V LRV   DTG+
Sbjct: 868 PELPSAVVGDRLRLQQILINLAGNALKFTARG-HVLVSLRRLAHDAHLVRLRVLVADTGI 926

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G++  + ++  + F Q   S   R  GTGLGL + K +VD   G+  + S P  G+    
Sbjct: 927 GISAEQQQRIFEGFTQAEASTSRRFGGTGLGLFICKRLVDLMGGELRVESAPGSGSRFWF 986

Query: 807 IF 808
             
Sbjct: 987 DL 988



 Score =  109 bits (272), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 66/522 (12%), Positives = 141/522 (27%), Gaps = 59/522 (11%)

Query: 97  EISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTN 156
            ++E+  +       +++   +    ++         G LL        +          
Sbjct: 34  LVNEQQARMALEREAELLAEAVTRRVELYQYGLRGVRGALLTAGEAHIDRELFRR----- 88

Query: 157 LYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSS 216
                          +REF G RGFG +   RV     A   R  +         +  + 
Sbjct: 89  --------YSLTRDIDREFPGARGFGFIR--RVAAADEAGFLRQARADGQPEFRIQQLTP 138

Query: 217 VEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFH 276
            + E+Y I   +    + +      +                   LT   + +       
Sbjct: 139 HDGERYVIQYIEPVARNGQALGLDIASEANRREAARAALETGQVRLTGPITLVQASGLRQ 198

Query: 277 TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY 336
              L                +                 +     LT E +   PI     
Sbjct: 199 QSFLILMPIY----------RSGITPPPGPQRELEGFGWSYAPLLTGEVLAGLPI----- 243

Query: 337 SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA 396
                   N +      +  + D+   G           +    +   ML R +      
Sbjct: 244 -------DNAAI-----HLELSDVTGDGAAVPFFVNGAAAPAQRLFGHMLRR-EIYGRHW 290

Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
                 +    +     +      A      +    +    +  +   R+      +L +
Sbjct: 291 QMAFSALPLFVQRLHQPSPRILFLAGSLVSLLLAALVNASALGRQRRHREA-ATQARLAA 349

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS-VMNHYLTE 515
           I+  ++DGI  +  +G+I   NR    LFGY  E  + +     L   +        L  
Sbjct: 350 IVGNSADGIIGVGLDGVISDWNRGAEALFGYREEQAVGRRVVDLLVPPSKENEELDILAR 409

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKL 571
           I      Q +   T+   ++  LL + + +  +       +    T+ DIS  K  + ++
Sbjct: 410 IA--RKEQVVSFDTVRRHQDGHLLDVAVTVSPILGPDGGVVGASKTVRDISAKKAAEARI 467

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
                  E + + ++        E+R  L  ++G      ++
Sbjct: 468 RELNTGLEHQIAERTA-------ELRR-LNVLLGSVLQAASE 501



 Score = 93.9 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/404 (8%), Positives = 93/404 (23%), Gaps = 46/404 (11%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL--HIDPNNHIGDLLKRQNTWYGK 146
           +   G + + +       G    + +G R+ D+        +  + +  + +++      
Sbjct: 361 VGLDGVISDWNRGAEALFGYREEQAVGRRVVDLLVPPSKENEELDILARIARKEQVVSFD 420

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR------- 199
           T     +G  L V + ++  PI   +    G      V          A  +        
Sbjct: 421 TVRRHQDGHLLDVAVTVS--PILGPDGGVVGASK--TVRDISAKKAAEARIRELNTGLEH 476

Query: 200 ---------------LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244
                          L        E+       +                R    V   +
Sbjct: 477 QIAERTAELRRLNVLLGSVLQAASEVSIITLDRDGIISGFNLGAERMLGYRADEVVGKAS 536

Query: 245 EYYAHKDDVLKTEKYPL----------LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294
               H +  L      L             +E +   +  +   + +  +       L++
Sbjct: 537 PTLLHSERELLARGQELGEEGFRVLVARAEQEGAETREWTYLRKDGSPLSVTLSVTVLRD 596

Query: 295 NSKESFEYLSHRNHPSLSAYFDEG----ENLTPETVDKCPIPFFVYS-HGNLFYANPSFL 349
            +     YL      +     +       +      D   +  + ++   +    N    
Sbjct: 597 EAGAINGYLGIAVDVTEWRNAEREMAAARDQLQMAADVARLGIWRWNLADDSLQWNERMC 656

Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
            L        +   G +     +    ++       L  +             +  +   
Sbjct: 657 ELYGQPL--ALRDGGLVYEHWRSRLHPEDLERTEASLRAAVEGRGNYDVIFRVVLPDGG- 713

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
              +      + +     +   GI  +    +  + ++     Q
Sbjct: 714 IRFIQAGAQVERDADGNPLQVTGINIDITSDQQLQARLREAKEQ 757


>gi|296329677|ref|ZP_06872162.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305674074|ref|YP_003865746.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296153175|gb|EFG94039.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305412318|gb|ADM37437.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 738

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 113/740 (15%), Positives = 248/740 (33%), Gaps = 69/740 (9%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN-HIGDLLKRQNTWYGKTT 148
           D    + + +E   + +   +  +    + D    +  D  N  +    K+   W  K  
Sbjct: 48  DNEMRIVQANEATERMLQVDSEDLKKRSVLDFLFSIPKDELNHAVKKFFKKGFLW--KEV 105

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
              ++G        LA   I            F ++                ++ F  L 
Sbjct: 106 PIRLDGGATKYIEFLAKRGIGEDFF-------FVVMRDISSKKILEREFSMNEQLFKDLF 158

Query: 209 EIKKGHSSVEKEKYDIFSQQSPP--PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
           +       +  +                  +N++S L+ Y        K       T   
Sbjct: 159 DRAVDGIVLFDKDGGFIDANLSFCKSFQINQNELSHLSLYEFIDSGSRKDFDNIWKTLNR 218

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE-YLSHRNHPSLSAYFDEGENLTPET 325
               + E    +        ++  T    S              S+     + E    E 
Sbjct: 219 KGKAKGELPVKLRSGVQKLFEFTITSNIISGFYMSIMRDITEKRSMELQLFKSEERFREI 278

Query: 326 VDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD------- 377
            +       ++S  G +  AN S   + +   ++ +        L+D+ +          
Sbjct: 279 FENAMDAIIIWSNDGRIVKANQSACKIFEL-PMNLLLKRRLCDFLVDSQQKYSITKRKYA 337

Query: 378 --NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
                 + ++    +                 ++   +                      
Sbjct: 338 KYGEIREELLFQMGNGQFKELEFTSKRTILENQHLTIL---------------------R 376

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
              D +  ++++    ++   +   + DG  + + +  I+  N   S + G   E+I + 
Sbjct: 377 NVSDRKRMEKELRESELKFRKVFNGSMDGNVLFDNQYRIIDANPLASHILGLSHEEIKQH 436

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555
                +       +     +I   ++   +  +   S   +   S +  I +        
Sbjct: 437 SLLDIISSYEIENLASPARQINFDEMDNEIPFLLSSSDNRKLEFSFKRNIIQNMN----L 492

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
               D++E K+ + +L  +  +         +  A ++HEIR P+TA+ GF +++K    
Sbjct: 493 AIFKDVTERKELEERLRKSDTLHVV-----GELAAGIAHEIRNPMTALKGFIQLLKGSVE 547

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
           G      Y  Y N I      +  I+ + L ++K ++    + +E   + + + + I L+
Sbjct: 548 G-----DYALYFNVITSELKRIESIITEFLILAKPQA----IMYEEKHVTQIMRDTIDLL 598

Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
              AN   + I     ++IP I  +   +KQ+ +NIL NAI   P GG I ++      +
Sbjct: 599 NAQANLSNVQIHLDLIDDIPPIYCEPNQLKQVFINILKNAIEVMPDGGNIFVTIRTLDQD 658

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            V++ +RD G+GMT  +L++  +PF         +  GTGLGL ++  +++ + G+  + 
Sbjct: 659 HVLISLRDEGIGMTEDKLKRLGEPFYTT------KERGTGLGLMVSYKIIEEHQGEIMVE 712

Query: 796 STPAKGTLIEIIFPLYDTSH 815
           S   KGT+  +  P+   + 
Sbjct: 713 SEEGKGTVFHLTLPVRQNAE 732



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 54/145 (37%), Gaps = 3/145 (2%)

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
           +  E    +    +++ E+ Q   I+  T D I I + E  I+  N A  ++     ED+
Sbjct: 12  LREELKRLKEENARLKKELNQHQVIVNNTLDAIFICDNEMRIVQANEATERMLQVDSEDL 71

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
            ++    FL       +NH + +         L K             +  + K+     
Sbjct: 72  KKRSVLDFLFSIPKDELNHAVKKFFKKG---FLWKEVPIRLDGGATKYIEFLAKRGIGED 128

Query: 553 CYSLTMHDISEWKQEKNKLSHAKKI 577
            + + M DIS  K  + + S  +++
Sbjct: 129 FFFVVMRDISSKKILEREFSMNEQL 153


>gi|300311805|ref|YP_003775897.1| two component hybrid sensor histidine kinase/response regulator
           protein [Herbaspirillum seropedicae SmR1]
 gi|300074590|gb|ADJ63989.1| two component hybrid sensor histidine kinase/response regulator
           protein [Herbaspirillum seropedicae SmR1]
          Length = 1278

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 113/777 (14%), Positives = 238/777 (30%), Gaps = 81/777 (10%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTWYGKT 147
                 + ++    K  G+    +IG      +    +D N    +  + +    +  + 
Sbjct: 200 GPEHVFERVNSAYFKLFGDRP--VIGQPARM-ALPELLDENLFMLLDRVYQTGQAYTERG 256

Query: 148 TLW-PIEGTNLYVP---IDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                  G + +     +D    PI +   +  G   F   +            + +D+ 
Sbjct: 257 ARLFLRRGVDSHFDGAVLDFVFQPIKNAEGKVDGI--FIEGNDVTERMLAEERLRIVDRA 314

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQ-SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
                      S               PP       ++  + +   H +      K    
Sbjct: 315 GEIGIFEWFPDSGRLSVSDRFRRLWGLPPEGEVTAAQLVGMIDEQFHPNLGTARIKEGGS 374

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
            +       +      +  Q    +    +Q++ +    Y+      +     ++    +
Sbjct: 375 RN--PLEYTEYHITRPDGQQRWLARKGEVVQDDPRTGSRYVGVAFDVTARKLMEQALAAS 432

Query: 323 PE-----------TVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
                         +D     FF + S G +   N +FL L  Y +  D+        +L
Sbjct: 433 EASVRANNAFVRQLLDSTDQGFFSIDSAGIITLCNAAFLQLLGYAAEKDVLGRPIHDVIL 492

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
              + + +     V+    +       +           S  + +       Q  +    
Sbjct: 493 QPSEETQSRTGCAVLRAAREGVSAHVDSENF--LRVDGTSFPVQYQTHPVW-QDGQLQGA 549

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490
                +  + R   + +     +L +I    S   + ++ +G  L  N+A+ ++ G   E
Sbjct: 550 LCTFVDLTERRRGLQALSWSENRLRAIFNQASVCFSELDLQGRYLRVNQALCRMLGRSEE 609

Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
           ++L          +   +        +      TLEK       +     +   I ++  
Sbjct: 610 EMLGMTLADVTHPDDVPMNMSLFNRCIEDGRSFTLEK--RYLRPDGSTFWVSSDISRIVD 667

Query: 551 SSC----YSLTMHDISEWKQEKNKLSHAKK--------------------IAEKESSHKS 586
                        DI+E ++ +  L                            ++     
Sbjct: 668 GEGRPQAMIAVSTDITERRRAEEALRELNDTLEQRVVEEILERSRAEAALRQMQKMEAVG 727

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
                V+H+    L  I G  +++++    P  + R  +       + +    + + LL 
Sbjct: 728 QLTGGVAHDFNNVLQIIGGNLQLLQSD---PRLDERSRQRVRIAIGAVDRGAKLSSQLLA 784

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706
            ++    +  L    ++L+  V     L++  A  + I I T  A+++   + D   V+ 
Sbjct: 785 FAR----RQPLQPRSINLERVVQNMDDLLR-RAVGENIDISTRVAHDLWNTMLDPNQVEN 839

Query: 707 IALNILSNAIHFTPSGGQIIIS---TTHTS-----------NEEVILRVRDTGVGMTNYE 752
           + +N   NA    PSGG++ +                     E V L++ D G GM+   
Sbjct: 840 LIINTAINARDAMPSGGRLTVQIDNVRLEDPVFLSQADLAPGEYVELQISDNGAGMSPEV 899

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            ++A +PF        + GEGTGLGL +A   V  + G   I S   KGT I I FP
Sbjct: 900 RDRAFEPFFTTK----LEGEGTGLGLSMAYGFVKQSKGHISIHSEQGKGTTIRIYFP 952



 Score = 74.3 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 31/247 (12%), Positives = 69/247 (27%), Gaps = 20/247 (8%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH-IDPNNHIGDLLKRQNTWYGK 146
            +D  G    +++ L + +G    +M+GM L DV+         +     ++   ++  +
Sbjct: 586 ELDLQGRYLRVNQALCRMLGRSEEEMLGMTLADVTHPDDVPMNMSLFNRCIEDGRSFTLE 645

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                 +G+  +V  D++       + E        +              + L+     
Sbjct: 646 KRYLRPDGSTFWVSSDIS----RIVDGEGRPQAMIAVSTDITERRRAEEALRELNDTLEQ 701

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
               +    S  +       +            V  LT   AH  + +      L     
Sbjct: 702 RVVEEILERSRAEAALRQMQKMEA---------VGQLTGGVAHDFNNV------LQIIGG 746

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
           +    Q D      ++   +   G +   +K S + L+      L       E +     
Sbjct: 747 NLQLLQSDPRLDERSRQRVRIAIGAVDRGAKLSSQLLAFARRQPLQPRSINLERVVQNMD 806

Query: 327 DKCPIPF 333
           D      
Sbjct: 807 DLLRRAV 813



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/328 (8%), Positives = 96/328 (29%), Gaps = 22/328 (6%)

Query: 48  SFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIG 107
           +F+ +      Q   ++   + + N FV   +  T +  ++ID+ G +   +    + +G
Sbjct: 416 AFDVTARKLMEQALAASEASVRANNAFVRQLLDSTDQGFFSIDSAGIITLCNAAFLQLLG 475

Query: 108 NYAF-KMIGMRLCDVSDILHIDPNNH-----IGDLLKRQNTWYGKTTLWPIEGTNLYVPI 161
             A   ++G  + DV      +  +      +    +  +          ++GT+   P+
Sbjct: 476 YAAEKDVLGRPIHDVILQPSEETQSRTGCAVLRAAREGVSAHVDSENFLRVDGTSF--PV 533

Query: 162 DLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEK 221
                P++ ++ +  G                       + +   +        S    +
Sbjct: 534 QYQTHPVW-QDGQLQGA--LCTFVDLTERRRGLQALSWSENRLRAIFNQASVCFSELDLQ 590

Query: 222 YDIFSQQSPP--PHLRMKNKVSSLTEYYAHKDDVLKTEKY--PLLTSEESSLPEQEDFHT 277
                          R + ++  +T       D +            +  S   ++ +  
Sbjct: 591 GRYLRVNQALCRMLGRSEEEMLGMTLADVTHPDDVPMNMSLFNRCIEDGRSFTLEKRYLR 650

Query: 278 INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS 337
            + + +        + +        ++     +     +E      +T+++  +      
Sbjct: 651 PDGSTFWVSSDISRIVDGEGRPQAMIAVSTDITERRRAEEALRELNDTLEQRVV------ 704

Query: 338 HGNLFYANPSFLLLTKYKSVDDIEIAGG 365
              +   + +   L + + ++ +    G
Sbjct: 705 -EEILERSRAEAALRQMQKMEAVGQLTG 731



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/300 (9%), Positives = 72/300 (24%), Gaps = 15/300 (5%)

Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPS 347
                      + ++ +                L    +   P    V+        N +
Sbjct: 20  RGAGPAAQILTASDWTASPLGAPAQWSPMLRATLNQILLSPTPS-LLVWGGARSMLYNDA 78

Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS-ARLHTIQWN 406
           F           +                    ++  +L         A    L      
Sbjct: 79  FAACLGSAHPAALGAPLTTIAGWPGTDAESAGRLQSAVLASLAGAPQQAECLALLAPPQA 138

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG-I 465
                 ++ +P  + ++  +      +      + +    +      L  ++E +     
Sbjct: 139 ATARWDLSCVPLWELDEPAQAQASGVLCTFLRASGVQTALL--HTDLLSDLMEQSPSFKA 196

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
            +   E +    N A  KLFG     ++ +P  + L +     +   L  +       T 
Sbjct: 197 VVRGPEHVFERVNSAYFKLFG--DRPVIGQPARMALPELLDENLFMLLDRVYQTGQAYTE 254

Query: 526 EKITLGSTK------EEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKI 577
               L   +      +  +L       K          +  +D++E    + +L    + 
Sbjct: 255 RGARLFLRRGVDSHFDGAVLDFVFQPIKNAEGKVDGIFIEGNDVTERMLAEERLRIVDRA 314


>gi|302382085|ref|YP_003817908.1| multi-sensor hybrid histidine kinase [Brevundimonas subvibrioides
            ATCC 15264]
 gi|302192713|gb|ADL00285.1| multi-sensor hybrid histidine kinase [Brevundimonas subvibrioides
            ATCC 15264]
          Length = 1216

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 107/809 (13%), Positives = 224/809 (27%), Gaps = 105/809 (12%)

Query: 88   NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGK 146
             +   G +   +    + +G     +IG+   D S    ++   N + D+L   +    +
Sbjct: 288  KVGLDGRVVSANARFAELLGLTEQSIIGVSTGDASHPDDVEATLNLLSDVLSGGDGSQIE 347

Query: 147  TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                  +G    V    +   +   + +  GF    +              +  +++F  
Sbjct: 348  KRYIRPDG--AIVWALTSLRALLDDSGKPDGFIAVAV--DITDAKAAEVALRESEERFRL 403

Query: 207  LHEIKKGHSSVEKEKYD-----------IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255
            + +       +     +                     L  K  V        +      
Sbjct: 404  MADTAPSPVWLTNAAGEVEFVNAALVSFYGKPADSFLGLAWKASVHPDDIDGVNAIQAEA 463

Query: 256  TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
               +     E   L     +  + ++   +    G  Q     SF+    R      A  
Sbjct: 464  RLDFSPYGFEGRFLRHDGVWRWMRVSVNPRFDGSGAFQGYVGLSFDVTETREALDALARQ 523

Query: 316  DEGENLTPETVDKC-----PIPFFVYS---HGNLFYANP------SFLLLTKYKSVDDIE 361
            +  +    E  D       P     +     G +   +       S   LT     D +E
Sbjct: 524  ERRQRFLLELADGVRELEDPQGIMDHVQSVLGRMLGVSRVGYGELSEDRLTATHMPDWVE 583

Query: 362  IAGGLSTLLDAPKLSDN-------NAIKPVMLYRSDRTCIAASARLHTIQ---------- 404
                 +      +                V    +D    ++ A    +           
Sbjct: 584  GVPSAAGTFRLSEFGGGLEPDLQLGRTVVVRDVATDGRTASSRAAFDALSVGSLIVVPLF 643

Query: 405  WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV----DTRINKRKMEIEVMQLCSILEA 460
               +    +           PE +       E      +    + ++     +  ++ + 
Sbjct: 644  RGGDMRAFLQIHCRTPREWTPEEIALIEDVAERTWSDVERARAELEVRDSEARFRAVADT 703

Query: 461  TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520
                I +  R+      N+A     G   E +    +  ++     + +      +    
Sbjct: 704  APVLIWVTQRDRTRSFVNQAYVDYMGGDYETVRTADWRSYIHPEDQARLVE--ESVAGEA 761

Query: 521  LRQTLEKITLGSTKEEKLLSLRI----IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKK 576
             RQ             +   LR      +        +     D+++ ++ +  L    +
Sbjct: 762  TRQPFALEARYRHHSGEYRWLRSFSRPRLTLHGDIIGFVGVAFDVTDARRVEQDLKRINE 821

Query: 577  --------------------IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
                                +  +           V+H+    LT +IG  ++I      
Sbjct: 822  LLEDRVGEALAEKAKAEADLMHAQRMEAVGRLTGGVAHDFNNLLTVVIGALDLILK---S 878

Query: 617  PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
            P    R  ++      +      + + LL  S+ ++    L  E + ++  + E+  L++
Sbjct: 879  PDDAARRQKFGEAALSAARRGERLTHQLLAFSRRQA----LRPEAIDINALIRESDPLLR 934

Query: 677  LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI-----HFTPSGGQIIIS--- 728
              A  + +  R        R++ D    +   LN++ NA         P GG I +    
Sbjct: 935  -RAVGEAVSYRLKLKRGGARVIVDPAQFEAALLNLIVNARDAVAERAAPDGGTITVQTQA 993

Query: 729  --------TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
                    T   +   V + V DTGVGM    L +  +PF    +     G+GTGLGL  
Sbjct: 994  CDVEAGHVTELAAGHYVCITVSDTGVGMAAETLRRVFEPFFTTKS----VGKGTGLGLSQ 1049

Query: 781  AKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
                   + G   I ST  +GT I +  P
Sbjct: 1050 VYGFARQSGGGVRIESTVGQGTQITLYLP 1078



 Score =  117 bits (292), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 44/420 (10%), Positives = 107/420 (25%), Gaps = 22/420 (5%)

Query: 173 REFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDI----FSQQ 228
             F+   G  +       +   A     + +F    +  +G          +        
Sbjct: 118 GLFATLVGAALRKTLARLDRTVADLGHSEARFRTAIDAVRGILWTNTADGRMEGDQPGWA 177

Query: 229 SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288
           +     R   +    +      D     E +    +  +    +    T      T    
Sbjct: 178 ALTGQSREDYQGYGWSNALHPDDVRPSLEAWNQAVAARTVFEFEHRVKTEAGVYRTFAVR 237

Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEG----ENLTPETVDKCPIPFF-VYSHGNLFY 343
                + S +  E++      + +   D      E      VD+       V   G +  
Sbjct: 238 AVPTLDASGDLVEWVGVHTDVTDARAADAALRRNEAELKAMVDQAAAGIAKVGLDGRVVS 297

Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403
           AN  F  L        I ++ G           D+      +L         +      I
Sbjct: 298 ANARFAELLGLTEQSIIGVSTG------DASHPDDVEATLNLLSDVLSGGDGSQIEKRYI 351

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
           + +     A+T       +   +      +  +  D +  +  +     +   + +    
Sbjct: 352 RPDGAIVWALT-SLRALLDDSGKPDGFIAVAVDITDAKAAEVALRESEERFRLMADTAPS 410

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
            + + N  G +   N A+   +G P +  L   +   +  +    +N    E        
Sbjct: 411 PVWLTNAAGEVEFVNAALVSFYGKPADSFLGLAWKASVHPDDIDGVNAIQAEARLD--FS 468

Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNKLSHAKKIAE 579
                      +     +R+ +            Y     D++E ++  + L+  ++   
Sbjct: 469 PYGFEGRFLRHDGVWRWMRVSVNPRFDGSGAFQGYVGLSFDVTETREALDALARQERRQR 528



 Score =  104 bits (260), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 43/430 (10%), Positives = 117/430 (27%), Gaps = 24/430 (5%)

Query: 72  NTFVFDPIPRTVR-FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN 130
           +   F      VR   W   A G ++          G       G    +      + P+
Sbjct: 145 SEARFRTAIDAVRGILWTNTADGRMEGDQPGWAALTGQSREDYQGYGWSNALHPDDVRPS 204

Query: 131 NHIG-DLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRV 189
                  +  +  +  +  +    G  +Y    + A+P    + +       G+      
Sbjct: 205 LEAWNQAVAARTVFEFEHRVKTEAG--VYRTFAVRAVPTLDASGDLV--EWVGVHTDVTD 260

Query: 190 DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSSLTEYY 247
                A  +R + +   + +      +       + S  +         +  +  ++   
Sbjct: 261 ARAADAALRRNEAELKAMVDQAAAGIAKVGLDGRVVSANARFAELLGLTEQSIIGVSTGD 320

Query: 248 AHKDDVLKTEKYPLLT--SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES----FE 301
           A   D ++     L    S       ++ +   +            L ++S +       
Sbjct: 321 ASHPDDVEATLNLLSDVLSGGDGSQIEKRYIRPDGAIVWALTSLRALLDDSGKPDGFIAV 380

Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDI 360
            +   +  +      E E       D  P P ++ +  G + + N + +      +   +
Sbjct: 381 AVDITDAKAAEVALRESEERFRLMADTAPSPVWLTNAAGEVEFVNAALVSFYGKPADSFL 440

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
                   L     +  ++      +    R   +          +      M      +
Sbjct: 441 G-------LAWKASVHPDDIDGVNAIQAEARLDFSPYGFEGRFLRHDGVWRWMRVSVNPR 493

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII-NREGIILSTNR 479
            +         G+  +  +TR     +  +  +   +LE  +DG+  + + +GI+     
Sbjct: 494 FDGSGAFQGYVGLSFDVTETREALDALARQERRQRFLLE-LADGVRELEDPQGIMDHVQS 552

Query: 480 AVSKLFGYPV 489
            + ++ G   
Sbjct: 553 VLGRMLGVSR 562



 Score =  102 bits (254), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 49/439 (11%), Positives = 109/439 (24%), Gaps = 62/439 (14%)

Query: 69  DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID 128
           +SE  F            W  +A G ++ ++  L    G  A   +G+          ID
Sbjct: 396 ESEERFRLMADTAPSP-VWLTNAAGEVEFVNAALVSFYGKPADSFLGLAWKASVHPDDID 454

Query: 129 PNNHI-GDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI-VHV 186
             N I  +     + +  +      +G  ++  + ++  P +  +  F G+ G    V  
Sbjct: 455 GVNAIQAEARLDFSPYGFEGRFLRHDG--VWRWMRVSVNPRFDGSGAFQGYVGLSFDVTE 512

Query: 187 NRVDNDPRALGKRLDKKFSHLH--------------------------------EIKKGH 214
            R   D  A  +R  +    L                                 E+ +  
Sbjct: 513 TREALDALARQERRQRFLLELADGVRELEDPQGIMDHVQSVLGRMLGVSRVGYGELSEDR 572

Query: 215 SSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY----------YAHKDDVLKTEKYPLLTS 264
            +       +    S     R+      L                 D    + +      
Sbjct: 573 LTATHMPDWVEGVPSAAGTFRLSEFGGGLEPDLQLGRTVVVRDVATDGRTASSRAAFDAL 632

Query: 265 EESSLPEQEDFHTINLN-------QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
              SL     F   ++        +  ++     +      +    S            +
Sbjct: 633 SVGSLIVVPLFRGGDMRAFLQIHCRTPREWTPEEIALIEDVAERTWSDVERARAELEVRD 692

Query: 318 GENLTPETVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
            E       D  P+  +V        + N +++        + +  A   S +    +  
Sbjct: 693 SEARFRAVADTAPVLIWVTQRDRTRSFVNQAYVDYMG-GDYETVRTADWRSYIHPEDQAR 751

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
                      R      A  AR    + +      +      +     + +   G+  +
Sbjct: 752 LVEESVAGEATR---QPFALEAR---YRHHSGEYRWLRSFSRPRLTLHGDIIGFVGVAFD 805

Query: 437 DVDTRINKRKMEIEVMQLC 455
             D R  ++ ++     L 
Sbjct: 806 VTDARRVEQDLKRINELLE 824



 Score =  101 bits (252), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 46/398 (11%), Positives = 108/398 (27%), Gaps = 21/398 (5%)

Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD 251
            P A+  RL +  +                           +  +   +  L        
Sbjct: 12  QPEAMIARLARVGARPWWQAVLLGLGFAATGLTLRWAGRAFYGEVTGFMILLPAVILAGL 71

Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
              +      +               + +   ++     T        F  L        
Sbjct: 72  AGGRIAGVAAVLGCLFGGWIIAGPDAVGVGIASRMGQVATFNFVVVGLFATLVGAALRKT 131

Query: 312 SAYFDE-------GENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIA 363
            A  D         E      +D      +   + G +    P +  LT     +D +  
Sbjct: 132 LARLDRTVADLGHSEARFRTAIDAVRGILWTNTADGRMEGDQPGWAALTGQSR-EDYQGY 190

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
           G  + L          A    +  R   T        H ++                 + 
Sbjct: 191 GWSNALHPDDVRPSLEAWNQAVAAR---TVFEFE---HRVKTEAGVYRTFAVRAVPTLDA 244

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
             + +   G+  +  D R     +     +L ++++  + GIA +  +G ++S N   ++
Sbjct: 245 SGDLVEWVGVHTDVTDARAADAALRRNEAELKAMVDQAAAGIAKVGLDGRVVSANARFAE 304

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           L G   + I+          +      + L+++LS      +EK  +    +  ++    
Sbjct: 305 LLGLTEQSIIGVSTGDASHPDDVEATLNLLSDVLSGGDGSQIEKRYI--RPDGAIVWALT 362

Query: 544 IIKKLPFS----SCYSLTMHDISEWKQEKNKLSHAKKI 577
            ++ L         +     DI++ K  +  L  +++ 
Sbjct: 363 SLRALLDDSGKPDGFIAVAVDITDAKAAEVALRESEER 400



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/287 (10%), Positives = 67/287 (23%), Gaps = 13/287 (4%)

Query: 51  QSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYA 110
                   + + +     DSE  F        V   W          +++     +G   
Sbjct: 674 AERTWSDVERARAELEVRDSEARFRAVADTAPV-LIWVTQRDRTRSFVNQAYVDYMGGDY 732

Query: 111 FKMIGMRLCDVSDILHIDPNNHIGDL-LKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIY 169
             +                           +  +  +       G   Y  +   + P  
Sbjct: 733 ETVRTADWRSYIHPEDQARLVEESVAGEATRQPFALEARYRHHSGE--YRWLRSFSRPRL 790

Query: 170 SRNREFSGFRGFGI-VHVNRVDNDPRALGKRLDKK-------FSHLHEIKKGHSSVEKEK 221
           + + +  GF G    V   R           L +             E    H+   +  
Sbjct: 791 TLHGDIIGFVGVAFDVTDARRVEQDLKRINELLEDRVGEALAEKAKAEADLMHAQRMEAV 850

Query: 222 YDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLN 281
             +    +   +  +   + +L       DD  + +K+       +   E+     +  +
Sbjct: 851 GRLTGGVAHDFNNLLTVVIGALDLILKSPDDAARRQKFGEAALSAARRGERLTHQLLAFS 910

Query: 282 QY-TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
           +    +     +    +ES   L      ++S             VD
Sbjct: 911 RRQALRPEAIDINALIRESDPLLRRAVGEAVSYRLKLKRGGARVIVD 957


>gi|27375868|ref|NP_767397.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
           USDA 110]
 gi|27349006|dbj|BAC46022.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
           USDA 110]
          Length = 862

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 126/679 (18%), Positives = 242/679 (35%), Gaps = 29/679 (4%)

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA----LGKRLDKKFS 205
               G    + +  A            G +    +          A      K L  +  
Sbjct: 195 LRDRGDGFQLTLTTAHGHTLEAIGRAIGGQAIVRIRELSGLRRDLAETNLRYKALSDETE 254

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
            L             K +  +     P      + +S ++ +  K ++L +     +   
Sbjct: 255 MLRGFAAAAPWPIWAKGENGALTFANPAYVRATEAASFSDAHERKLELLDSADRGAMERG 314

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
                       I +    +      +   S      +      +LS+           T
Sbjct: 315 LKDAANFTSRLPIVIGGERRIYDVRAVNVGSGSVGVAIDASEADALSSALVRMAEAHRRT 374

Query: 326 VDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
           +D+      V+     L + N S+  L              L          D++ +  +
Sbjct: 375 LDQLSSGVAVFDGHRRLAFYNDSYRRLWD------------LDRTFLDANPDDSSVLDQL 422

Query: 385 MLYRSDRTCIAASA---RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
              R         A   +LH      E +    ++P  +A          G      D  
Sbjct: 423 RAARKLPEQPDFRAWKAKLHEAYRAVEAAKDTWYLPDGRALSVVTTPNPEGGVTYLFDDV 482

Query: 442 INKRKMEIEVMQL----CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
               ++      +       L++ ++G+A+    G     N A  +++    + +  +P 
Sbjct: 483 TESLELARRFDGMIRVQRETLDSLAEGVAVFGSNGKAQLFNPAFVRMWKLSSDAMRDEPH 542

Query: 498 TVFLEQNTPSVMNHYL-TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556
              +E     + +  +    +   +     +  +    + K  S+   + +        L
Sbjct: 543 IQTVEGWCHQLFDDPVVWRQIREAVTSIESRADVPLKLDRKDGSVLDGMIRPLHDGATML 602

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
           T  DI++ +  +  L    +  E     K DF+  VS+E+R+PLT IIGF+  + +   G
Sbjct: 603 TFQDITDTENVERALRERNEALEAADQMKVDFVHHVSYELRSPLTTIIGFAHFLSDPSTG 662

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
           PL  P+  EY +Y+ +S N +L + N++LD++ I++G M L   PV + + +  A   +Q
Sbjct: 663 PLT-PKQAEYLDYVTKSTNALLALTNNILDLATIDAGAMKLELGPVDVSKTIELAAEGIQ 721

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
                 RI ++   A +I   + D + V Q+  N+L+NA+ F+P    + IS   T +  
Sbjct: 722 DRLATDRIRLKVEIAPDIGSFIGDEKRVVQVLYNLLANAVGFSPQDSTVGISARRTEH-S 780

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           V+  V D+G G+     +K    F     SQ  R  G GLGL L ++ V+ + GK  + S
Sbjct: 781 VVFTVTDSGPGIPADMKDKVFNWFE--SRSQGSRHRGAGLGLSLVRSFVELHGGKVRVDS 838

Query: 797 TPAKGTLIEIIFPLYDTSH 815
              +GT++   FP    +H
Sbjct: 839 IVGRGTVVICDFPTDQAAH 857



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 44/383 (11%), Positives = 89/383 (23%), Gaps = 47/383 (12%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151
           +G L   +    +                       D +    +LL   +    +  L  
Sbjct: 273 NGALTFANPAYVRAT---------------EAASFSDAHERKLELLDSADRGAMERGLKD 317

Query: 152 IEGTNLYVPIDLAA-LPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
                  +PI +     IY       G    G+       +   +   R+ +      + 
Sbjct: 318 AANFTSRLPIVIGGERRIYDVRAVNVGSGSVGVAIDASEADALSSALVRMAEAHRRTLDQ 377

Query: 211 KKGHSSVEK---------EKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
                +V           + Y               +  S L +  A +    + +    
Sbjct: 378 LSSGVAVFDGHRRLAFYNDSYRRLWDLDRTFLDANPDDSSVLDQLRAARKLPEQPDFRAW 437

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQ-YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
                 +    E           +      T       ++ +        L+  FD    
Sbjct: 438 KAKLHEAYRAVEAAKDTWYLPDGRALSVVTTPNPEGGVTYLFDDVTESLELARRFDGMIR 497

Query: 321 LTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIA------GGLSTLLDAP 373
           +  ET+D       V+ S+G     NP+F+ + K  S    +        G    L D P
Sbjct: 498 VQRETLDSLAEGVAVFGSNGKAQLFNPAFVRMWKLSSDAMRDEPHIQTVEGWCHQLFDDP 557

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
            +          +       +        +     + L     P                
Sbjct: 558 VVWRQIREAVTSIESRADVPL-------KLDRKDGSVLDGMIRPLHDGA-------TMLT 603

Query: 434 EPEDVDTRINKRKMEIEVMQLCS 456
             +  DT   +R +      L +
Sbjct: 604 FQDITDTENVERALRERNEALEA 626


>gi|116052146|ref|YP_789010.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115587367|gb|ABJ13382.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 1417

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 112/662 (16%), Positives = 222/662 (33%), Gaps = 48/662 (7%)

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS--LTE 245
           R      A  +                  ++    D           R +  V    +  
Sbjct: 334 RQRRHREAATQARLAAIVGNSADGIIGVGLDGVISDWNRGAEALFGYREEQAVGRRVVDL 393

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
                 +  + +    +  +E  +         + +          +             
Sbjct: 394 LVPPSKENEELDILARIARKEQVVSFDTVRRHQDGHLLDVAVTVSPILGPDGGVVGASKT 453

Query: 306 RNHPSLSAYFDEGENLTPETVDK-------------------CPIP-----FFVYSHGNL 341
               S     +         ++                               +   G +
Sbjct: 454 VRDISAKKAAEARIRELNTGLEHQIAERTAELRRLNVLLGSVLQAASEVSIITLDRDGII 513

Query: 342 FYANPSFLLLTKYKSVDDIEIAGGL----STLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397
              N     +  Y++ + +  A          L A           V++ R+++    A 
Sbjct: 514 SGFNLGAERMLGYRADEVVGKASPTLLHSERELLARGQELGEEGFRVLVARAEQEG--AE 571

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
            R  T      + L++T       ++        GI  +  + R  +R+M     QL   
Sbjct: 572 TREWTYLRKDGSPLSVTLSVTVLRDEAGAINGYLGIAVDVTEWRNAEREMAAARDQLQMA 631

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFG----YPVEDILRKPFTVFLEQNTPSVMNHYL 513
            +    GI   N     L  N  + +L+G         ++ + +   L           L
Sbjct: 632 ADVARLGIWRWNLADDSLQWNERMCELYGQPLALRDGGLVYEHWRSRLHPEDLERTEASL 691

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKNKL 571
              +       +    +      + +     +++    +    +    DI+  +Q + +L
Sbjct: 692 RAAVEGRGNYDVIFRVVLPDGGIRFIQAGAQVERDADGNPLQVTGINIDITSDQQLQARL 751

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
             AK+ A+  S+ KS FLA +SHEIRTP+ A++G  ++ +        N R  +Y +   
Sbjct: 752 REAKEQADAASAAKSSFLANMSHEIRTPMNAVLGMLQLARQTDL----NERQRDYLDKAS 807

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
            +   +L ++ND+LD SKIE+GK+ L   P  L+  + +   ++     +K + +     
Sbjct: 808 SAATSLLGLLNDILDYSKIEAGKLVLEMLPFELEPLMQDLAVVLSGNQGDKDVEVIFDID 867

Query: 692 NNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH--TSNEEVILRV--RDTGV 746
             +P  ++ D   ++QI +N+  NA+ FT  G  +++S          V LRV   DTG+
Sbjct: 868 PELPSAVVGDRLRLQQILINLAGNALKFTARG-HVLVSLRRLAHDAHLVRLRVLVADTGI 926

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G++  + ++  + F Q   S   R  GTGLGL + K +VD   G+  + S P  G+    
Sbjct: 927 GISAEQQQRIFEGFTQAEASTSRRFGGTGLGLFICKRLVDLMGGELRVESAPGSGSRFWF 986

Query: 807 IF 808
             
Sbjct: 987 DL 988



 Score =  107 bits (268), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 66/522 (12%), Positives = 141/522 (27%), Gaps = 59/522 (11%)

Query: 97  EISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTN 156
            ++E+  +       +++   +    ++         G LL        +          
Sbjct: 34  LVNEQQARMALEREAELLAEAVIRRVELYQYGLRGVRGALLTAGEAHIDRELFRR----- 88

Query: 157 LYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSS 216
                          +REF G RGFG +   RV     A   R  +         +  + 
Sbjct: 89  --------YSLTRDIDREFPGARGFGFIR--RVAAADEAGFLRQARADGQPEFRIQQLTP 138

Query: 217 VEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFH 276
            + E+Y I   +    + +      +                   LT   + +       
Sbjct: 139 HDGERYVIQYIEPVARNGQALGLDIASEANRREAARAALETGQVRLTGPITLVQASGLRQ 198

Query: 277 TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY 336
              L                +                 +     LT E +   PI     
Sbjct: 199 QSFLILMPIY----------RSGITPPPGPQRELEGFGWSYAPLLTGEVLAGLPI----- 243

Query: 337 SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA 396
                   N +      +  + D+   G           +    +   ML R +      
Sbjct: 244 -------DNAAI-----HLELSDVTGDGAAVPFFVNGAAAPAQRLFGHMLRR-EIYGRHW 290

Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
                 +    +     +      A      +    +    +  +   R+      +L +
Sbjct: 291 QMAFSALPLFVQRLHQPSPRILFLAGSLVSLLLAALVNASALGRQRRHREA-ATQARLAA 349

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS-VMNHYLTE 515
           I+  ++DGI  +  +G+I   NR    LFGY  E  + +     L   +        L  
Sbjct: 350 IVGNSADGIIGVGLDGVISDWNRGAEALFGYREEQAVGRRVVDLLVPPSKENEELDILAR 409

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKL 571
           I      Q +   T+   ++  LL + + +  +       +    T+ DIS  K  + ++
Sbjct: 410 IA--RKEQVVSFDTVRRHQDGHLLDVAVTVSPILGPDGGVVGASKTVRDISAKKAAEARI 467

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
                  E + + ++        E+R  L  ++G      ++
Sbjct: 468 RELNTGLEHQIAERTA-------ELRR-LNVLLGSVLQAASE 501



 Score = 93.9 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/404 (8%), Positives = 93/404 (23%), Gaps = 46/404 (11%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL--HIDPNNHIGDLLKRQNTWYGK 146
           +   G + + +       G    + +G R+ D+        +  + +  + +++      
Sbjct: 361 VGLDGVISDWNRGAEALFGYREEQAVGRRVVDLLVPPSKENEELDILARIARKEQVVSFD 420

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR------- 199
           T     +G  L V + ++  PI   +    G      V          A  +        
Sbjct: 421 TVRRHQDGHLLDVAVTVS--PILGPDGGVVGASK--TVRDISAKKAAEARIRELNTGLEH 476

Query: 200 ---------------LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244
                          L        E+       +                R    V   +
Sbjct: 477 QIAERTAELRRLNVLLGSVLQAASEVSIITLDRDGIISGFNLGAERMLGYRADEVVGKAS 536

Query: 245 EYYAHKDDVLKTEKYPL----------LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294
               H +  L      L             +E +   +  +   + +  +       L++
Sbjct: 537 PTLLHSERELLARGQELGEEGFRVLVARAEQEGAETREWTYLRKDGSPLSVTLSVTVLRD 596

Query: 295 NSKESFEYLSHRNHPSLSAYFDEG----ENLTPETVDKCPIPFFVYS-HGNLFYANPSFL 349
            +     YL      +     +       +      D   +  + ++   +    N    
Sbjct: 597 EAGAINGYLGIAVDVTEWRNAEREMAAARDQLQMAADVARLGIWRWNLADDSLQWNERMC 656

Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
            L        +   G +     +    ++       L  +             +  +   
Sbjct: 657 ELYGQPL--ALRDGGLVYEHWRSRLHPEDLERTEASLRAAVEGRGNYDVIFRVVLPDGG- 713

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
              +      + +     +   GI  +    +  + ++     Q
Sbjct: 714 IRFIQAGAQVERDADGNPLQVTGINIDITSDQQLQARLREAKEQ 757


>gi|322389964|ref|ZP_08063504.1| sensor histidine kinase VicK [Streptococcus parasanguinis ATCC 903]
 gi|321143400|gb|EFX38838.1| sensor histidine kinase VicK [Streptococcus parasanguinis ATCC 903]
          Length = 450

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 90/405 (22%), Positives = 169/405 (41%), Gaps = 36/405 (8%)

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDT-RINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
           +         PE         +  +  R+    +E E  +L SIL   +DG+   NR G 
Sbjct: 56  YSEVVDMQGSPELTDMTNSINDLSEVIRLTHENLEQETKRLTSILSYMTDGVLATNRRGQ 115

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
           I+  N   +K      +++L       L       +   +TE+  L +    E       
Sbjct: 116 IIMVNEMAAKQLNVNPDEVLNTSILDLLSLGDDYDLRSLITEVPELTIDSQDE------- 168

Query: 534 KEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
              + +SLR+    +   S +       +HD +E  +E+ +              +  F+
Sbjct: 169 -NGEYISLRVRFALIRRESGFISGLVAVLHDTTEQDKEERE--------------RRLFV 213

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
           + VSHE+RTPLT++  + E +     G L  P   ++        N ++ +V DLL +S+
Sbjct: 214 SNVSHELRTPLTSVKSYLEAL---DDGALSEPVAPDFVKVSLNETNRMMRMVTDLLSLSR 270

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLV-----QLYANEKRILIRTSFANNIPRILADLRSV 704
           I++    L  E  +    ++  ++       Q   + K+  +   +      +  D   +
Sbjct: 271 IDNETSQLDIELTNFTAFITFILNRFDKIKSQSQEDTKKYELIREYPITPIWVEIDTDKM 330

Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764
            Q+  NIL+NAI ++P GG+I +    T   ++I+ + D G+G+   +L +    F ++ 
Sbjct: 331 TQVIDNILNNAIKYSPDGGKIKVGMKTTD-AQLIISISDEGLGIPKKDLPRIFDRFYRVD 389

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            ++     GTGLGL +AK +V  + G  +  S   KG+   I+ P
Sbjct: 390 KARSRAQGGTGLGLAIAKEIVKQHKGFIWAKSEYGKGSTFTIVLP 434


>gi|116513325|ref|YP_812231.1| Signal transduction histidine kinase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
 gi|116092640|gb|ABJ57793.1| PAS/PAC sensor signal transduction histidine kinase [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC BAA-365]
          Length = 620

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 88/397 (22%), Positives = 172/397 (43%), Gaps = 36/397 (9%)

Query: 426 ENMPQNGIEPEDVDTRINK--RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           + + Q G     + T+I +   + E E  +L S+L   +DG+   +R G +   N+    
Sbjct: 234 DELGQLGAAFNTLSTKIERSNEQSESERRRLDSVLSHMTDGVIATDRHGNVSIMNQMAQD 293

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
                 ED ++KP +  L           ++       +  ++      T +E +L    
Sbjct: 294 FLDVKAEDAIKKPISQVLGLGEDYTSQDLISN------QSDMQVTVNAGTDDEMILHASF 347

Query: 544 IIKK--LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
            + K    F S     +HD++E  + +++              +  F++ VSHE+RTPLT
Sbjct: 348 TLIKRVTGFVSGAVCVLHDVTEQIKNEDE--------------QRQFVSNVSHELRTPLT 393

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           ++  + E +    +         ++ +   +    ++ +VNDLL +S+++ G   L  E 
Sbjct: 394 SVRAYIEALNEGAW--KDPEIAPQFLDVTQKETERMIRMVNDLLVLSRMDRGATKLEPEW 451

Query: 662 VSLDEAVSEAISLV---------QLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712
           V+  + VS  ++           +  ++ K  +I+    N    +  D   + +   NI+
Sbjct: 452 VNFTDFVSHLLNRFDMIVEHDQGEAQSDTKEYVIKRDLGNQALWVEIDTDQMMRAIDNIM 511

Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           +NAI ++P GG I +  T   N +++L + D G+G+   +L K    F +   ++     
Sbjct: 512 NNAIKYSPDGGTITVRLTQNQN-QILLSISDQGLGIPRKDLGKIFDRFYRADKARSRAQG 570

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GTGLGL +AK +V A+ G+ +  S    G+   I  P
Sbjct: 571 GTGLGLAIAKEIVTAHGGRIWADSREGHGSTFYIALP 607


>gi|189912995|ref|YP_001964884.1| Signal transduction histidine kinase [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|189913322|ref|YP_001964551.1| Putative histidine kinase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|167777671|gb|ABZ95971.1| Signal transduction histidine kinase [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167781390|gb|ABZ99687.1| Putative histidine kinase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
          Length = 664

 Score =  315 bits (808), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 105/531 (19%), Positives = 201/531 (37%), Gaps = 36/531 (6%)

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAG 364
            N   +     E E    +  D        +S    +   NP      +           
Sbjct: 41  TNAEEIERVIREKEKQYQDIYDTANSIIIRWSPDFRIHSVNPYAEEFFQIPKDQVEGKDL 100

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
            +       + S+        ++      I     +     + + ++  +    +    +
Sbjct: 101 VIDLFRIQFEKSNEIKSLLWNIFHRPEQNIRQEFDVFVGP-DDKRTVTWSNRILKNEFGY 159

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
           P  +   GI  +  + +I +  +     ++  +      G   ++++ I++S N      
Sbjct: 160 PYEVLSIGI--DITNRKIAEENLMKSYERILDLYNNAPCGYHSLDKDNIVVSINDTELDW 217

Query: 485 FGYPVEDILRK-PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
            GY  E+I+        L  ++       +      +L            K++    + +
Sbjct: 218 LGYSREEIVGNFRINDLLTPSSFEKFEQIIKSFPHENLTGV---ELEFIRKDKSTFFVSL 274

Query: 544 IIKKLPFSSCYSLT----MHDISEWKQEKNKLSHAK--------------KIAEKESSHK 585
                   +   +     + DI++ K  ++KL+                 + A K +  K
Sbjct: 275 NSIPTFDKNGNFVISKSTVFDITDRKIAEDKLNDYSQKIQLQNKRLQKAVEAAIKANQSK 334

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
           S F ++++HE+RTPL A+IGFS+++      P        + N +  +G  +L ++ND+L
Sbjct: 335 SVFFSKITHELRTPLHAVIGFSQILGKDPNLP---EHLKGFVNSLYENGVHLLGMINDIL 391

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR--ILADLRS 703
           D+SKIE+GKM    E  SL +      S+      EK IL        I      ADL+ 
Sbjct: 392 DLSKIEAGKMTESREKFSLVQLWDTLFSMFSYRFAEKHILFELIHPETIKNQYFEADLQK 451

Query: 704 VKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVI-LRVRDTGVGMTNYELEKAMKP 759
           ++QI +N+L NA+ FT  G    ++ I      N +++   V+DTG+G+   +L    + 
Sbjct: 452 IRQILVNLLGNALKFTNQGFVNMEVKIKQGLEPNIDLVSFIVKDTGIGIPKDQLHSIFEA 511

Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           F Q       + EGTGLGL ++  +VD   G   + S   +G+      PL
Sbjct: 512 FQQTEQGSSYQ-EGTGLGLSISHQLVDFLGGTIQVDSDTNQGSTFIFELPL 561



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/156 (14%), Positives = 48/156 (30%), Gaps = 6/156 (3%)

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
           + Q        +    +R +  +  Q   I +  +  I   + +  I S N    + F  
Sbjct: 31  LRQILFRKNLTNAEEIERVIREKEKQYQDIYDTANSIIIRWSPDFRIHSVNPYAEEFFQI 90

Query: 488 PVEDILRKPFT---VFLEQNTPSVMNHYLTEILSLDLRQTL-EKITLGSTKEEKLLSLRI 543
           P + +  K        ++    + +   L  I     +    E        +++ ++   
Sbjct: 91  PKDQVEGKDLVIDLFRIQFEKSNEIKSLLWNIFHRPEQNIRQEFDVFVGPDDKRTVTWSN 150

Query: 544 IIKKLPFSSCY--SLTMHDISEWKQEKNKLSHAKKI 577
            I K  F   Y       DI+  K  +  L  + + 
Sbjct: 151 RILKNEFGYPYEVLSIGIDITNRKIAEENLMKSYER 186


>gi|209524475|ref|ZP_03273023.1| histidine kinase [Arthrospira maxima CS-328]
 gi|209494933|gb|EDZ95240.1| histidine kinase [Arthrospira maxima CS-328]
          Length = 351

 Score =  315 bits (808), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 100/346 (28%), Positives = 157/346 (45%), Gaps = 30/346 (8%)

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
            D L +     L  N  ++    + + L     Q  E       K       RI++    
Sbjct: 1   MDYLHQSIYDLLPNNLANLYLKNVNKALITQEVQVFEYEWFFDEK-RHHFEARIVVS--- 56

Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
             S     + DI++ K  + +L  AK  AE  +  +S+FLA +SHE+RTPL AIIG+SE 
Sbjct: 57  GESEVLAIIRDITQSKLAQIELQRAKDAAESANHAQSEFLASMSHELRTPLNAIIGYSE- 115

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           +  +     G   +I   + I  SG  +L I+ D+LDISK+ESG M +  E  ++   + 
Sbjct: 116 LLREDAVDFGYTDFIPDLDQIRASGLHLLTIIQDILDISKLESGMMTVCLENFNIATLIK 175

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG------- 722
           E  +LVQ    +    ++ +   ++  + AD   VKQ+ LN+LSNA  FT +G       
Sbjct: 176 EIEALVQPLFPKNHNQLKVNCTPDVEGMYADRIKVKQVLLNLLSNAAKFTENGLVNLNVI 235

Query: 723 ------------------GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764
                               ++++  H     V   V DTG+G+T  ++ K  +PF +  
Sbjct: 236 YIGQLDTKISAYLRENLASSVLVNDEHQLQGGVAFEVIDTGIGLTTEQMTKIFEPFERAD 295

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           NS   R EGTGLGL ++K   +   G   + S   +G+     FPL
Sbjct: 296 NSTTRRYEGTGLGLSISKRFCELMGGAITVASEIGEGSTFTAYFPL 341


>gi|109897620|ref|YP_660875.1| multi-sensor hybrid histidine kinase [Pseudoalteromonas atlantica
            T6c]
 gi|109699901|gb|ABG39821.1| multi-sensor hybrid histidine kinase [Pseudoalteromonas atlantica
            T6c]
          Length = 1223

 Score =  315 bits (808), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 79/380 (20%), Positives = 160/380 (42%), Gaps = 6/380 (1%)

Query: 433  IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
                 +  R N++ +     +  ++++       + N +G I   N+      G  +E  
Sbjct: 701  TAELVIKRRQNEQSVRSSEERFRAVVDNVPQLAWMANAQGEIEWFNQRWLSYTGTTMEQN 760

Query: 493  LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
            L   +  +   +    + +  ++ L+  +         G+  + +    R+         
Sbjct: 761  LNGGWKAYHHPDHQEAVFNKFSDCLAKGIDWEDTFPLRGANGKYRWFLSRMNAIYAQDGQ 820

Query: 553  --CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
               +  T  DI+E ++   KL+            K +FLA ++HE+R PL  +    E+I
Sbjct: 821  LIRFFGTNTDITEQRKMAEKLTKLTNKLSVADKRKDEFLATLAHELRNPLAPLRNSMELI 880

Query: 611  KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
            +N +  P            +DR    ++ +++DLLDIS+I   K++L  + + L + V +
Sbjct: 881  RNVKTDP---AMMQTAVATMDRQVAQMVRLIDDLLDISRISKDKLSLKRQRIDLKDIVEQ 937

Query: 671  AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
            A+  V  YA      ++ +  +    + AD   + QI  N+L+NA  +TP  G I ++  
Sbjct: 938  AVEAVSPYAKRLGHSVQVNMPHEAISLFADPARLAQILGNLLNNACKYTPKNGFIWVTVN 997

Query: 731  HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
                ++V + V+D+G+G+  +   +  + F Q+ N  +    G G+GL L K +V+ + G
Sbjct: 998  LGGEQQVSISVKDSGLGIAEHMRSQVFELFTQVSNQLEQAEGGLGIGLSLVKRLVEMHGG 1057

Query: 791  KFYIFST-PAKGTLIEIIFP 809
                 S     G    +  P
Sbjct: 1058 HVECKSEGLGHGAEFIVTLP 1077



 Score = 47.7 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 33/268 (12%), Positives = 85/268 (31%), Gaps = 37/268 (13%)

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           +LE  +  + ++  +GI+   N+          ++++  PF      +  S +   + + 
Sbjct: 140 VLERFAVFMGVLTPDGILREANKTALVSASLQEDEVIGLPFEQTFWWSHNSQVQQSIRKA 199

Query: 517 LSLDLRQTLEK-ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM----HDISEWKQEKN-- 569
           ++        +  T     ++ L+ +  ++  +       + +     DI+  K+ +   
Sbjct: 200 INKAKHGVSSRFDTTARLADDVLIDIDFMLHPIFDEHGSVVQIIPSGIDITTRKRAERNS 259

Query: 570 --------------KLSHAKKIAEKESSHKSDFLARV---SHEIRTPLTAIIGFSEVIKN 612
                          L   K I  +  +   D  A +   +H    P++  +G + V ++
Sbjct: 260 AMLTQVSSDLLSAGSLKRIKSIITENLAAHLDLSACIFCETH----PVSGRLGITHVWQH 315

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN------LHFEPVSL-- 664
                +   +              +  IVN++    +   G+            P+SL  
Sbjct: 316 ASLAEMPKAKMELPFEIAMCEKENLTLIVNNVATDPRYTDGQFQERGIGAFICVPISLDK 375

Query: 665 -DEAVSEAISLVQLYANEKRILIRTSFA 691
            +  V            +  I +   FA
Sbjct: 376 KNHFVLSVYRSASHEWRDDEIELVIEFA 403



 Score = 44.2 bits (103), Expect = 0.095,   Method: Composition-based stats.
 Identities = 32/267 (11%), Positives = 69/267 (25%), Gaps = 11/267 (4%)

Query: 69  DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID 128
            SE  F         +  W  +A G ++  ++      G    + +           H +
Sbjct: 717 SSEERFRAVVDNVP-QLAWMANAQGEIEWFNQRWLSYTGTTMEQNLNGGWKAYHHPDHQE 775

Query: 129 PN-NHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187
              N   D L +   W     L    G   +    + A  IY+++ +    R FG     
Sbjct: 776 AVFNKFSDCLAKGIDWEDTFPLRGANGKYRWFLSRMNA--IYAQDGQLI--RFFGTNTDI 831

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYD--IFSQQSPPPHLRMKNKVSSLTE 245
                      +L  K S   + K    +    +    +   ++    +R      ++ +
Sbjct: 832 TEQRKMAEKLTKLTNKLSVADKRKDEFLATLAHELRNPLAPLRNSMELIRNVKTDPAMMQ 891

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
                 D    +   L+          +D  ++   +   K              + L H
Sbjct: 892 TAVATMDRQVAQMVRLIDDLLDISRISKDKLSLKRQRIDLKDIVEQAVEAVSPYAKRLGH 951

Query: 306 RNH---PSLSAYFDEGENLTPETVDKC 329
                 P  +           + +   
Sbjct: 952 SVQVNMPHEAISLFADPARLAQILGNL 978



 Score = 43.5 bits (101), Expect = 0.16,   Method: Composition-based stats.
 Identities = 28/319 (8%), Positives = 75/319 (23%), Gaps = 25/319 (7%)

Query: 287 QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANP 346
                 +     +       +  S  +       +T        +   ++   +      
Sbjct: 248 DITTRKRAERNSAMLTQVSSDLLSAGSLKRIKSIITENLAAHLDLSACIFCETHPVSGRL 307

Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH----- 401
               + ++ S+ ++  A       +       N    V    +D        +       
Sbjct: 308 GITHVWQHASLAEMPKAKM-ELPFEIAMCEKENLTLIVNNVATDPRYTDGQFQERGIGAF 366

Query: 402 ---TIQWNRENSLAMTFIPFE----KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
               I  +++N   ++         + ++    +          +       +      L
Sbjct: 367 ICVPISLDKKNHFVLSVYRSASHEWRDDEIELVIEFARRFWVRTEHLRILETLRASKTTL 426

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKL---FGYPVEDILRKP----FTVFLEQNTPS 507
              LEA   G   ++    +    R        FGY  +    +     F   +      
Sbjct: 427 DITLEAAQVGDWEVDL---VTGLTRRSLHHDKCFGYEAQIPDAQWGIEGFYAHIHPQDRD 483

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWK 565
            + +   + L        E   +   K    L+    +              + +ISE K
Sbjct: 484 EVKYKFEKSLRDGSDFRAEFRVIWPDKSIHWLASYGSLYGDTDGKPTRVLGIVANISERK 543

Query: 566 QEKNKLSHAKKIAEKESSH 584
           + +          E+ +  
Sbjct: 544 RTEALQIAQTNALEQMAQE 562


>gi|323491062|ref|ZP_08096254.1| aerobic respiration control sensor protein ArcB [Vibrio
           brasiliensis LMG 20546]
 gi|323314726|gb|EGA67798.1| aerobic respiration control sensor protein ArcB [Vibrio
           brasiliensis LMG 20546]
          Length = 781

 Score =  315 bits (808), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 88/405 (21%), Positives = 171/405 (42%), Gaps = 19/405 (4%)

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
               +         +E E       + ++      L S ++A+ D I   N +G+    N
Sbjct: 122 RIKAEEAREEAMKDLEDEVYQREKTQVELAERTALLRSFIDASPDLIYYRNADGVFSGCN 181

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
           RA+ +L G     ++         +     +     ++ S +   T E+        +  
Sbjct: 182 RAMEELTGKKESQLVGLTPWDVYSKEVAQQIVDTDQKVFSDNQTLTYEQWLEYPDGHKNY 241

Query: 539 LSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
             LR +                 DI+E K+ +  L       EK S  K+ F++ +SHE+
Sbjct: 242 FELRKVPFYSKEGRHLGLVGFGRDITERKRHEESL-------EKASRDKTTFISTISHEL 294

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTPL  I+G S ++ + +           +   I+ S   + +I ND++D+ K +  K+ 
Sbjct: 295 RTPLNGIVGLSRMLLDTQL----TEEQRNHMQTINVSAITLGNIFNDIIDMDKFDRRKLE 350

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNA 715
           L    ++ +E V+E  S+  L A++K +       + +P  I  D   ++Q+  N++SNA
Sbjct: 351 LFPSTLNFEEFVAEMESISALMASQKGLRFDLERLSELPSAIEVDATRLRQVLWNLISNA 410

Query: 716 IHFTPSGGQI-IISTTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGE 772
           + FT  GG +  +S+  T     + + + D+G+G+   ELEK    + Q+ + +      
Sbjct: 411 MKFTKEGGVVMTVSSEVTDEHAHITMEIEDSGIGIPEAELEKIFAMYYQVKSGKDNLHAV 470

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF--PLYDTSH 815
           GTG+GL ++K +++   G   + S    G+   +    PL +   
Sbjct: 471 GTGIGLAVSKQLINMMDGDITVSSEEGFGSTFTVTICVPLANDQE 515



 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/204 (12%), Positives = 55/204 (26%), Gaps = 10/204 (4%)

Query: 19  KGNTQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESV----SNTNYLDSENTF 74
           +   Q+L+ K   N  +  +  +E    +   +    D   E      +     +     
Sbjct: 98  RSRDQELNHKLQQNIAKLNQEIEERIKAEEAREEAMKDLEDEVYQREKTQVELAERTALL 157

Query: 75  VFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHI 133
                       +  +A G     +  + +  G    +++G+   DV          +  
Sbjct: 158 RSFIDASPDLIYYR-NADGVFSGCNRAMEELTGKKESQLVGLTPWDVYSKEVAQQIVDTD 216

Query: 134 GDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193
             +     T   +  L   +G   Y   +L  +P YS+     G  GFG           
Sbjct: 217 QKVFSDNQTLTYEQWLEYPDGHKNYF--ELRKVPFYSKEGRHLGLVGFG--RDITERKRH 272

Query: 194 RALGKRLDKKFSHLHEIKKGHSSV 217
               ++  +  +            
Sbjct: 273 EESLEKASRDKTTFISTISHELRT 296


>gi|206895448|ref|YP_002246402.1| PAS/PAC sensor signal transduction histidine kinase
           [Coprothermobacter proteolyticus DSM 5265]
 gi|206738065|gb|ACI17143.1| PAS/PAC sensor signal transduction histidine kinase
           [Coprothermobacter proteolyticus DSM 5265]
          Length = 699

 Score =  315 bits (808), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 83/500 (16%), Positives = 176/500 (35%), Gaps = 42/500 (8%)

Query: 314 YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
                E++     D       V     +  AN     L  YK  +           L   
Sbjct: 235 LATAAEDILSTVADSL---MLVGLDSRIVLANRKVHDLLGYKGEE-----------LKGK 280

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
            +    +   +          +      T        + +        ++  E       
Sbjct: 281 DIVSIVSDIEITAIVESGGVYSNETTFLTKS---GKQVPVLVSASVVRDREEEVAGIVLT 337

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
             +    +  ++++     +  ++++    GI I  ++  I+  N+ ++ +FGY +E+++
Sbjct: 338 ALDISKRKQMEQELRASEEKYRTLVDHALVGIGIH-QDNRIVFANQRMATMFGYTLEELI 396

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553
             P    L     S++   +         ++    T    K+       +    + ++  
Sbjct: 397 GLPIADLLHPEERSLVLARVNGT-DPQPPESNTYETRLLKKDGSFFYALVSNSLITYNDR 455

Query: 554 YSLTMH--DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
            +      DI++ K         +K  E+ +     F   VSH++R PL +I GFS+++ 
Sbjct: 456 VATLFTISDITDTKA--------RKELEEANRELEAFSYSVSHDLRAPLRSIDGFSQMLL 507

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
                 L + +  +Y   I  +   +  ++NDLL +S+I   + ++HFE ++L     + 
Sbjct: 508 EDYADKL-DDQGRDYLKRIRAATQRMSQLINDLLTLSRI--SRADMHFEELNLTAMAEDI 564

Query: 672 ISLVQLYANEKRILIRTSFANNIPRI--LADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
            + ++    E+ +          P +    D   ++ +  N+L NA  FT      II  
Sbjct: 565 AAELKQSQPERDVEFIIE-----PNVKAYGDSHLLRIVLENLLRNAWKFTSKHKSAIIEF 619

Query: 730 TH-TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                + + +  VRD G G     ++K   PF ++        EGTG+GL   + +V  +
Sbjct: 620 GVKEHDGKTVYFVRDNGAGFDMAYVDKLFVPFQRLHEQD--EFEGTGIGLATVQRIVHRH 677

Query: 789 MGKFYIFSTPAKGTLIEIIF 808
            G  +      KG       
Sbjct: 678 GGTVWAEGEVEKGATFYFTL 697



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/239 (9%), Positives = 66/239 (27%), Gaps = 12/239 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +     +   + ++   +G    ++ G  +  +        +  I  +++    +  +TT
Sbjct: 253 VGLDSRIVLANRKVHDLLGYKGEELKGKDIVSIV------SDIEITAIVESGGVYSNETT 306

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                G    VP+ ++A  +  R  E +G                    +  ++K+  L 
Sbjct: 307 FLTKSGKQ--VPVLVSASVVRDREEEVAGI--VLTALDISKRKQMEQELRASEEKYRTLV 362

Query: 209 EIKKGHSSVEKEKYDIFSQQSPP--PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
           +       + ++   +F+ Q         ++  +        H ++          T  +
Sbjct: 363 DHALVGIGIHQDNRIVFANQRMATMFGYTLEELIGLPIADLLHPEERSLVLARVNGTDPQ 422

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
                  +   +  +                +    L   +  + +    E E    E 
Sbjct: 423 PPESNTYETRLLKKDGSFFYALVSNSLITYNDRVATLFTISDITDTKARKELEEANREL 481



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/284 (10%), Positives = 78/284 (27%), Gaps = 33/284 (11%)

Query: 177 GFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM 236
           GF G  +           A    L    S +    +    +   K +    +       +
Sbjct: 229 GFMGLTLATAAEDILSTVADSLMLVGLDSRIVLANRKVHDLLGYKGEELKGKD------I 282

Query: 237 KNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS 296
            + VS +      +   + + +   LT     +P       +   +          +  +
Sbjct: 283 VSIVSDIEITAIVESGGVYSNETTFLTKSGKQVPVLVSASVVRDRE----------EEVA 332

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKS 356
                 L       +       E      VD   +   ++    + +AN     +  Y  
Sbjct: 333 GIVLTALDISKRKQMEQELRASEEKYRTLVDHALVGIGIHQDNRIVFANQRMATMFGYT- 391

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT----CIAASARLHTIQWNRENSLA 412
           ++++        L            + ++L R + T      + +     ++ +     A
Sbjct: 392 LEELIGLPIADLLHPE--------ERSLVLARVNGTDPQPPESNTYETRLLKKDGSFFYA 443

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
           +        N   + +       +  DT+  ++++E    +L +
Sbjct: 444 LVSNSLITYN---DRVATLFTISDITDTK-ARKELEEANRELEA 483



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/215 (6%), Positives = 55/215 (25%), Gaps = 9/215 (4%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL----LKRQNTWYGKT 147
              +   ++ +    G    ++IG+ + D+      + +  +  +     +   +   +T
Sbjct: 374 DNRIVFANQRMATMFGYTLEELIGLPIADLLHPE--ERSLVLARVNGTDPQPPESNTYET 431

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
            L   +G+  Y  +  + +    R    +       +   +   +     + L+     +
Sbjct: 432 RLLKKDGSFFYALVSNSLITYNDR---VATLFTISDITDTKARKELEEANRELEAFSYSV 488

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
               +           +  +                      +   L  +   L     +
Sbjct: 489 SHDLRAPLRSIDGFSQMLLEDYADKLDDQGRDYLKRIRAATQRMSQLINDLLTLSRISRA 548

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302
            +  +E   T        +      + + +   E 
Sbjct: 549 DMHFEELNLTAMAEDIAAELKQSQPERDVEFIIEP 583


>gi|254252656|ref|ZP_04945974.1| Signal transduction histidine kinase [Burkholderia dolosa AUO158]
 gi|124895265|gb|EAY69145.1| Signal transduction histidine kinase [Burkholderia dolosa AUO158]
          Length = 1265

 Score =  315 bits (808), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 116/688 (16%), Positives = 238/688 (34%), Gaps = 37/688 (5%)

Query: 144  YGKTTLWPIEGTNLYVPID-LAALP----IYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
                     E     + +   A  P    +  R    SG  GF       +        +
Sbjct: 458  RNLLIYLRKEAQQHVLEVLHYACRPNGFLLLGRAEAVSGADGFEHAGAPHLYRKVPTAKR 517

Query: 199  RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
               +    +  ++   S           Q  P      +  +          DD      
Sbjct: 518  S--QGAFPIDALRPWASQGTAPPVRRAQQADPVLEAADRTALERYAPPGFIVDDKGDVVH 575

Query: 259  YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
            +    S   +    E    + L +  + +   T++    E+           +       
Sbjct: 576  FRGDVSGFVAPASGEAS--LALPRLLQPELNVTVRTALIEAKRTGQPVRRERVPL----- 628

Query: 319  ENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
                   +D  P+     +   + +   +   L       D   AG   + +   + +  
Sbjct: 629  -GDAHFALDVLPLA----ADDLVPHFLVTLERLPDDAPAPDTLNAGSPHSRVQELERTIT 683

Query: 379  NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
                 +   ++    + A       +    N   ++     ++      + +  +E  + 
Sbjct: 684  TLSDELEATQAQLKTVVAEFESANEELRTANEEMLSTNEELQSANEELLLAKQELESANQ 743

Query: 439  DTRINKRKMEIEVMQL-------CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
            +      +++    QL        +++E     + +++R+  +   +     LF  P + 
Sbjct: 744  ELASLNDELKSRNEQLDRVNDDLSNLVEGIPLPVVVLDRQLRLRHFSPQAQTLFRLPDDS 803

Query: 492  ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
            +  +P        +       L  ++   ++   +        E +   + +   +    
Sbjct: 804  V-GQPLAQLNSLFSAVD----LERVVQSAVQGLADVEHEYQDSEGRWWLVNVRAYRTADD 858

Query: 552  S--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                  L   DI + K        A+  AE+ ++ K +FLA VSHE+R PL  I  ++ V
Sbjct: 859  RIDGAVLAFQDIHQLKSALGNAQSAQLDAERANTAKDNFLALVSHELRAPLNVISNWAAV 918

Query: 610  IK--NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
            +   ++R  P            I R   L  ++++DLLD+S+I SG+ +L  +PV    A
Sbjct: 919  LMAASERGVPTDEQMSQRAVTTILRHCQLQAELIDDLLDVSRISSGRFSLDAKPVDFAAA 978

Query: 668  VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727
            +   +   +  A +K I++ TS       +  D R ++Q+A N++ NA+ FTP GG++ +
Sbjct: 979  IRTVVESHRPIAAKKAIVLATSDLQGQAIVSGDARRLQQVASNLIGNALKFTPQGGRVEV 1038

Query: 728  STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
            + T      + L V D G+G+    L +    F Q   S+  +  G GLGL + K +V A
Sbjct: 1039 ALT-RLGALIELSVTDNGIGVKPELLPRLFDRFMQSDTSRTRQYGGLGLGLSIVKHLVTA 1097

Query: 788  NMGKFYIFST-PAKGTLIEIIFPLYDTS 814
            + G     S    +GT + +  PL  T+
Sbjct: 1098 HGGTVTASSEGEGRGTRLTVRIPLLQTA 1125


>gi|294677043|ref|YP_003577658.1| signal transduction histidine kinase [Rhodobacter capsulatus SB
           1003]
 gi|294475863|gb|ADE85251.1| signal transduction histidine kinase [Rhodobacter capsulatus SB
           1003]
          Length = 892

 Score =  315 bits (808), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 85/464 (18%), Positives = 185/464 (39%), Gaps = 14/464 (3%)

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
           +++   ++        +     S   A++  +   S       +AR    +     SL +
Sbjct: 129 HETATLVDAGPEALAPVLPELRSRAGALEDDVRTISLEGVREFAARSMAQRERVFTSLML 188

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
                                      R     +     +L +++  + D + +++ EG 
Sbjct: 189 LASLTTALLAAITAGLVITWSLWRFGMRQT-GSLSAAKARLEAVIGTSFDAVIVVDHEGK 247

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN-HYLTEILSLDLRQTLEKITLG- 531
           +L  N A  ++FGY   + + +     +                 +  + +      +G 
Sbjct: 248 VLEFNGAAERVFGYSHAEAVGQHLNDLIVPEAMKSAKVAGFKRYRTGGVPRIAGHGLIGL 307

Query: 532 --STKEEKLLS--LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
               K+  +    + +   ++     +   M DI++    + +L  A+  A      +++
Sbjct: 308 QARRKDGSVFPAEISVTATRIGRKEIFVGYMRDITDRVAAEKELIDARDAAMAGEQAQAE 367

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           F+A +SHE+RTPL  ++G  E+++        +         + ++G ++L  VN+ LD+
Sbjct: 368 FVAVMSHEMRTPLNGLLGTLELLRETPL----DASQAALLGSMQKAGEILLSHVNNTLDV 423

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQ 706
            ++++GK++L  EP +    + E + +    A  +   + T     +P  +  D   ++Q
Sbjct: 424 ERLDAGKLSLSREPFAPMSVLDEIVQMQAAGAGARGNRLETRAVGRLPDAVEGDAMRIRQ 483

Query: 707 IALNILSNAIHFTPSGGQIIISTTH-TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           + LN++ NAI FT  G  I +   +     ++  RV DTG+G+   E E+    F  +  
Sbjct: 484 VLLNLVGNAIKFTRDG-TITLEAEYHRDQGQLEYRVIDTGIGIPQGETERIFDDFVTLDP 542

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
                  G+GLGL +A+ ++ A  G+  + S P +G+   I  P
Sbjct: 543 ELSREATGSGLGLSIARRLMRAMRGQIGVESDPGQGSAFWITLP 586



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/354 (9%), Positives = 75/354 (21%), Gaps = 28/354 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D  G + E +    +  G    + +G  L D+     +      G    R         
Sbjct: 242 VDHEGKVLEFNGAAERVFGYSHAEAVGQHLNDLIVPEAMKSAKVAGFKRYRTGGVPRIAG 301

Query: 149 L-------WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
                      +G+     I + A  I  R   F G+     +                 
Sbjct: 302 HGLIGLQARRKDGSVFPAEISVTATRI-GRKEIFVGY-----MRDITDRVAAEKELIDAR 355

Query: 202 KKFSHLHEIKKGHSSVEKEKYD-----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256
                  + +    +V   +       +           +    ++L        ++L +
Sbjct: 356 DAAMAGEQAQAEFVAVMSHEMRTPLNGLLGTLELLRETPLDASQAALLGSMQKAGEILLS 415

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
                L  E     +               +        +      L  R    L    +
Sbjct: 416 HVNNTLDVERLDAGKLSLSREPFAPMSVLDEIVQMQAAGAGARGNRLETRAVGRLPDAVE 475

Query: 317 EGENLTPE-TVDKCPIPFFVYSHGNL----FYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
                  +  ++           G +     Y      L  +          G    + D
Sbjct: 476 GDAMRIRQVLLNLVGNAIKFTRDGTITLEAEYHRDQGQLEYRVIDTGIGIPQGETERIFD 535

Query: 372 APKLSDNNAIKPVM-----LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
                D    +        L  + R   A   ++       + S     +P   
Sbjct: 536 DFVTLDPELSREATGSGLGLSIARRLMRAMRGQIGVESDPGQGSAFWITLPAPV 589


>gi|332701444|ref|ZP_08421532.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332551593|gb|EGJ48637.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 697

 Score =  315 bits (808), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 106/528 (20%), Positives = 200/528 (37%), Gaps = 22/528 (4%)

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN---LFYANPSFLLL 351
             ++  E L +    +   + +  + +    ++  P    V    +   +   +     +
Sbjct: 16  ELRKQLERLRYPFDGASRHWQEASQVILDSILESIPEGVIVSGGPSRLPVLSISRYGREM 75

Query: 352 TKYKSVDD---IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
               S      +    G   +LDA +       +  +        +  +  +  ++ +  
Sbjct: 76  LGGGSDLIGLSLADLLGPWNMLDADETQGLELSEFPLYRAVMEREVIRNCEMILVRPDGA 135

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468
           +   +            E +       E  + +  ++ +     +  +++E   D IA +
Sbjct: 136 HIPIL-CNAAPILGLNREVLGGVCSWREIPELKEAEKILHKRHQEFKALVENNPDVIARL 194

Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFL--EQNTPSVMNHYLTEILSLDLRQTLE 526
           +     L  N A   L G     I+ K F   +             +  +L      ++E
Sbjct: 195 DHGHRFLYLNPASEALSGLAPVQIIGKRFQEVIKSSDEDMQEAEKVIERVLRTGKEDSVE 254

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
                     K+  +RI  ++              D++  +Q++  L  AK+ AE  S  
Sbjct: 255 LPIRL-NGRRKIFQIRIAPERDAEGSIRTVLCIARDVTRIRQQEQMLRKAKEEAEMASRA 313

Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
           KS+FLA +SHEIRTPL  I+G +E++  +  G         Y   I+ S   +L I+ND+
Sbjct: 314 KSEFLASMSHEIRTPLGGILGMTELLMARVAGDSN----QSYLELIENSAMSLLGILNDI 369

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRS 703
           LD+SKIE+GK++L  E     E +       ++ A +  +         IP  +  DL  
Sbjct: 370 LDLSKIEAGKVDLEPEEFEFREEMLTLAEPFRIQAEKSGLSFDVRLDPAIPERMHGDLEK 429

Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTS----NEEVILRVRDTGVGMTNYELEKAMKP 759
           +KQI  N+LSNA+ FT  GG + ++T           +   V DTG+G+  ++       
Sbjct: 430 LKQILRNLLSNAVKFTVKGG-VTLTTDLADKCGDQCRLRFTVSDTGIGIPRHKQRSLFGM 488

Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           F Q+ +       GTGLGL ++K +     G   + S    G+     
Sbjct: 489 FEQLRDHMSKNCAGTGLGLAISKRLAGMLGGDISLESEKGLGSTFTFT 536



 Score = 58.1 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 14/141 (9%), Positives = 30/141 (21%), Gaps = 8/141 (5%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID---PNNHIGDLLKRQNTWY 144
            +D       ++       G    ++IG R  +V      D       I  +L+      
Sbjct: 193 RLDHGHRFLYLNPASEALSGLAPVQIIGKRFQEVIKSSDEDMQEAEKVIERVLRTGKEDS 252

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
                 PI          +   P               I            + ++  ++ 
Sbjct: 253 ---VELPIRLNGRRKIFQIRIAPERDAEGSIRTV--LCIARDVTRIRQQEQMLRKAKEEA 307

Query: 205 SHLHEIKKGHSSVEKEKYDIF 225
                 K    +    +    
Sbjct: 308 EMASRAKSEFLASMSHEIRTP 328


>gi|332307944|ref|YP_004435795.1| PAS/PAC sensor hybrid histidine kinase [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332175273|gb|AEE24527.1| PAS/PAC sensor hybrid histidine kinase [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 1172

 Score =  315 bits (808), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 117/753 (15%), Positives = 252/753 (33%), Gaps = 53/753 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMR--LCDVSDILHIDPNNHIGDLLKRQNTW 143
            W  +         E++    G+      G      D+      D  + +  L +     
Sbjct: 150 VWEFNLEQQKLIWDEQMFILHGSDPSGFSGSLNDWSDLLHPE--DKEDALQSLTQSLTNI 207

Query: 144 YGKTTLWPIE---GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
                 + I    G   ++     A P+ S N E S  +  G+ +        +   +  
Sbjct: 208 EKLDIAFRIVTPLGDTRHIR--AFARPVRSPNGEVS--KIIGVNYDISAQQQQQKWLENG 263

Query: 201 DKKFSHLHEIKK--GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
                 L ++ +   ++ V  ++       +P         +  +               
Sbjct: 264 LHSNELLIKVLRETDNAVVITDENVNIKWTNPGFTRITGYYLEEVQGKNPGHILQGLQSS 323

Query: 259 YPLLTSEESSLPEQEDF------HTINLNQYTKKQYFGTLQNN---SKESFEYLSHRNHP 309
              +     ++ ++E F      +  + +    K        N   S             
Sbjct: 324 PESIAQMRQAVAQRERFNVEILNYCKDGSPLWLKINSHPTFQNGAFSGFIAIQSDITEQK 383

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDD-----IEIA 363
           +      +   +    +D   +        G +   N + L +  Y   +      I+  
Sbjct: 384 NAELALLKANRIQKAILDSAHLLMVSCDADGRILTCNQTTLTVLGYGQNELKQDANIQQF 443

Query: 364 GGLSTLL---DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
              S LL           + ++      S            T     +  + M       
Sbjct: 444 MLRSELLKFASQSSQHAQHPLEAFFYLASQGEVDENEWTFVT---KNDYQIPMEVAVTGI 500

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
            +          +  +    +  K++ + +   L +  E    G   ++     ++ +  
Sbjct: 501 FSPENTLEGYLLVARDISQIKRFKKERQRQQDLLETTGEMAKLGGWELDLNSNKVTWSDQ 560

Query: 481 VSKLFGYP-VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
           V  +   P   ++  +    +  +    V+   +   ++   R  L+   +  T + K +
Sbjct: 561 VYHIHELPIGSEVDLEKAMEYYPEEARPVVEEAINSSIANGNRWDLQVPFI--TAKGKHI 618

Query: 540 SLRIIIKKLPFSSCYSLT---MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
            +R +      +    +      DI+E K+ + +       A++ S  KS+FLA +SHEI
Sbjct: 619 WVRAVGYAEYQNDEPVILRGAFQDITEMKKAEEQ-------AKEASRTKSEFLANMSHEI 671

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTP+  I+G ++++           +   +A  +  S   +L ++ND+LD SKIE+GK++
Sbjct: 672 RTPINGIVGMNDLLLATELTK----KQRHFAELVHSSSESLLLLINDILDFSKIEAGKLS 727

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNA 715
           +      L   +   I      A +K + +      ++P  I +D   ++Q+  N+L NA
Sbjct: 728 IESIDFDLHLLLGNIIDTFASRAQQKGLELIFDLHPDVPQWIASDPGRIRQVLNNLLGNA 787

Query: 716 IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           I FT  G +II+  T    +++   + DTG+G+           F Q+ +S      GTG
Sbjct: 788 IKFTHHG-EIILRITLDGEKQLKFCIIDTGIGIHEDNQAALFSKFMQVDSSTTRNFGGTG 846

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           LGL ++K + +   G   + S   +G+      
Sbjct: 847 LGLAISKQLSELLGGTVGVSSRWQQGSTFWFTI 879


>gi|89072514|ref|ZP_01159086.1| putative sensor histidine kinase FexB [Photobacterium sp. SKA34]
 gi|89051618|gb|EAR57071.1| putative sensor histidine kinase FexB [Photobacterium sp. SKA34]
          Length = 789

 Score =  315 bits (808), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 95/452 (21%), Positives = 185/452 (40%), Gaps = 20/452 (4%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           +++  +   L        +    L   Q     +     I   +  +       + +E E
Sbjct: 81  EDSRQRLSKLVTKLEEMRSRDMEL-NKQLQDNVAQLNQEIEEREKAEEAREEAMHDLENE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
                  +  +  +   L S L+A+ D I   N +      NRA+S+L G   ++++   
Sbjct: 140 VYQRENAQLAVAEQSALLKSFLDASPDLIYYRNEKNQFSGCNRAMSELLGKTEKELVGLT 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CY 554
                 +     +     E+ + +   T E+  +    +  L  LR +            
Sbjct: 200 PWDVYPEEVAKKIIKTDEEVFNENSAMTDEQWLVYPNGKRALFELRKVPFYNRNGRRLGL 259

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+ ++ L       EK SS K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 260 MGFGRDITERKKYEDAL-------EKASSDKTSFISTISHELRTPLNGIVGLSRMLLDTD 312

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                      Y   +  S   + +I ND++D+ K +  ++ L  +P+  +E + E  ++
Sbjct: 313 L----TDEQRGYLRTVHVSAITLGNIFNDIIDLDKSDRRRLELMPKPLDFNEFIDEMGNI 368

Query: 675 VQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQI-IISTT-H 731
            QL A +K +         +P  I  D   ++Q+  N++ NA  FT  GG I  +S+  H
Sbjct: 369 SQLMAEQKGLRFDLECLTELPKNIEVDSTRLRQVLWNLIGNATKFTKQGGVILSVSSEIH 428

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP-NSQQIRGEGTGLGLPLAKAMVDANMG 790
             + ++I  V D+GVG+   E++     + Q+      I   GTG+GL +++ +V    G
Sbjct: 429 EHDADIIFEVEDSGVGIPKSEIDNIFAMYYQVKQGDDNIHAVGTGIGLAVSRQLVQLMGG 488

Query: 791 KFYIFSTPAKGTLIEI--IFPLYDTSHPHDCI 820
              + S   +G+   +    PL +     + +
Sbjct: 489 DIAVHSEVGEGSTFTVKIRVPLVEDVIEEEIV 520



 Score = 43.1 bits (100), Expect = 0.22,   Method: Composition-based stats.
 Identities = 16/128 (12%), Positives = 35/128 (27%), Gaps = 13/128 (10%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK-----TTL 149
               +  + + +G    +++G+   DV       P      ++K     + +        
Sbjct: 177 FSGCNRAMSELLGKTEKELVGLTPWDVY------PEEVAKKIIKTDEEVFNENSAMTDEQ 230

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
           W +         +L  +P Y+RN    G  GFG               ++     +    
Sbjct: 231 WLVYPNGKRALFELRKVPFYNRNGRRLGLMGFG--RDITERKKYEDALEKASSDKTSFIS 288

Query: 210 IKKGHSSV 217
                   
Sbjct: 289 TISHELRT 296


>gi|89070246|ref|ZP_01157570.1| two-component hybrid sensor and regulator [Oceanicola granulosus
           HTCC2516]
 gi|89044166|gb|EAR50324.1| two-component hybrid sensor and regulator [Oceanicola granulosus
           HTCC2516]
          Length = 552

 Score =  315 bits (808), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 99/514 (19%), Positives = 193/514 (37%), Gaps = 33/514 (6%)

Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYK 355
           +      L  +  P   +  ++        ++   I     S   + + N  F+  + + 
Sbjct: 49  AGLVATRLRAQTAPREPSETEKQLAHEVRALNAHAIVLVADSRMRIVHVNDRFVEASGFT 108

Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
             + +        L +  K         +  +  D    +   RL   +           
Sbjct: 109 RSELVGRPTSWIYLSNDQKTH-----GEICRHIFDGKTWSGETRL---RCKDGTYRWTQT 160

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GII 474
               + ++  + +   GI  +   ++        E   + S L   SD + + + +   I
Sbjct: 161 TIIPRLDENGKVIGTVGIRTDITASKTA-----SEERDIVSALHRLSDAVVMFSADSFRI 215

Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
           L  N     L  +       K       ++ P  +   L +++      +L         
Sbjct: 216 LYLNETAMSLLDWNEARYPTKRMFDIDFEHDPDEVRSVLQKLV-NGTANSLSFEI--RLS 272

Query: 535 EEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
           +   L+   +++     + +   + D+SE               E+    K++F++ VSH
Sbjct: 273 DRPFLANLQLVRPAAGEARFVAILRDLSER--------------EEMDRAKNEFISTVSH 318

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           E+R+PLT+I G   ++ +   G +  P+  E      R+ + ++ IVND+LD+ KI +G+
Sbjct: 319 ELRSPLTSIKGAMGLVLSGAAGEIS-PKAAELVEIAHRNADRLVLIVNDILDLEKIAAGR 377

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714
           M    E   L   + EA +    YA   ++ I             D   + Q+  N+LSN
Sbjct: 378 MEFTLERHDLMVILREARAANNAYAERFQVKISVRPPAAPAWANVDADRILQVLTNLLSN 437

Query: 715 AIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           A  F+  G +I ++T  T      + V D GVG+    L    + F Q+ N       G+
Sbjct: 438 AAKFSRPGSEI-LATVSTEGGRHTVSVTDRGVGIPQEALATIFERFQQVDNPGHNAPRGS 496

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           GLGL + KA+V+++ G   + STP +GT +    
Sbjct: 497 GLGLSIVKAIVESHGGSVSVDSTPGEGTTVSFTL 530



 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/347 (12%), Positives = 91/347 (26%), Gaps = 21/347 (6%)

Query: 94  YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIE 153
            +  +++   +  G    +++G     +        +  I   +    TW G+T L   +
Sbjct: 93  RIVHVNDRFVEASGFTRSELVGRPTSWIYLSNDQKTHGEICRHIFDGKTWSGETRLRCKD 152

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
           GT  Y       +P    N +  G    GI                     S LH +   
Sbjct: 153 GT--YRWTQTTIIPRLDENGKVIGT--VGIRTDITASKTASEE----RDIVSALHRLSDA 204

Query: 214 HSSVEKEKYDIFSQQSPPPHLRMKNKV-----SSLTEYYAHKDDVLKTEKYPLLTSEESS 268
                 + + I         L   N+            + H  D +++    L+    +S
Sbjct: 205 VVMFSADSFRILYLNETAMSLLDWNEARYPTKRMFDIDFEHDPDEVRSVLQKLVNGTANS 264

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG----ENLTPE 324
           L  +      +       Q        ++             +    +E      +    
Sbjct: 265 LSFE--IRLSDRPFLANLQLVRPAAGEARFVAILRDLSEREEMDRAKNEFISTVSHELRS 322

Query: 325 TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
            +        +   G     +P    L +    +   +   ++ +LD  K++        
Sbjct: 323 PLTSIKGAMGLVLSGAAGEISPKAAELVEIAHRNADRLVLIVNDILDLEKIAAGRM--EF 380

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
            L R D   I   AR     +     + ++  P         +  + 
Sbjct: 381 TLERHDLMVILREARAANNAYAERFQVKISVRPPAAPAWANVDADRI 427


>gi|117926486|ref|YP_867103.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117610242|gb|ABK45697.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 910

 Score =  315 bits (808), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 101/414 (24%), Positives = 186/414 (44%), Gaps = 18/414 (4%)

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470
                    +A           +  E    R  + ++      L  ILE + DG  +++R
Sbjct: 363 HTQDLTSRVQAQTQDLTQANARLLEEIEQRRTAEEELREHQELLHDILETSVDGFLVVDR 422

Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ-----NTPSVMNHYLTEILSLDLRQTL 525
           +G +  +N+  ++++  P   I+++  ++ L+      + P      +  +   D     
Sbjct: 423 KGNVTHSNQRFAQMWQIPESIIMQQDESLLLQHVLPQLSHPHSFMAKVNGLYEDDQFSLD 482

Query: 526 EKITLGSTKEEKLLSLRIII-KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
           E +     ++ ++                      DI+  ++++ +L  AK  AE  ++ 
Sbjct: 483 ELMF----RDGRVFERHSRPLYHNGDMVGRLWQFRDITREREQQRQLQTAKDRAESANAA 538

Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
           KS FLA +SHEIRTPL  IIG  E ++ +        R+    + I RS  ++LD++N++
Sbjct: 539 KSAFLATMSHEIRTPLNGIIGMLEHLRQEPLEAALKERF----DLICRSSEVLLDLLNNI 594

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRS 703
           LD SKIE+ ++     P    + + + I L +L A+EK I +      N+P   + D   
Sbjct: 595 LDFSKIEADQLRFESIPYRPKQLIQDGIELHKLLAHEKGIDLSCHCHPNLPSSSMGDPTR 654

Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNE--EVILRVRDTGVGMTNYELEKAMKPFG 761
           ++QI +N++SNAI FT +G  + I          ++ + V D+G G+   +L +   PF 
Sbjct: 655 IRQILINLVSNAIKFTETG-YVQIEAYLEEGAPAQLHINVSDSGSGIPEAQLAQLFTPFT 713

Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
           Q   S   R  GTGLGL ++K +V+A  G+  + S   +G+   +  P    S 
Sbjct: 714 QADGSISRRHGGTGLGLAISKRLVEAMYGQISVTSQVGEGSSFLMTIPHQPPSQ 767


>gi|328952553|ref|YP_004369887.1| multi-sensor signal transduction histidine kinase [Desulfobacca
           acetoxidans DSM 11109]
 gi|328452877|gb|AEB08706.1| multi-sensor signal transduction histidine kinase [Desulfobacca
           acetoxidans DSM 11109]
          Length = 501

 Score =  315 bits (808), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 97/412 (23%), Positives = 186/412 (45%), Gaps = 25/412 (6%)

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRK----MEIEVMQLCSILEATSDGIAIINR 470
           F            + +  +E +  + R  + +    +  E  +L +I+   +DG+ + NR
Sbjct: 107 FRVDHLTLVVKRVLEKQKLERQARELREEQARNLYTLASEQSRLHTIINCMADGVLVTNR 166

Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530
           +  ++  N A+ +L           P + +L+  +     + L      D    + +   
Sbjct: 167 DLEVVLCNPALMRLLELSTPPPQPGPLSFYLDDTSLKEAIYTLLTAPEQDNITYISQELR 226

Query: 531 GSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
              K    L         P           HDI+ +K+                  K++F
Sbjct: 227 ---KGRAYLRALSAPFYGPDLQLLGVVTVFHDITGFKELDE--------------MKNEF 269

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
           +  VSHE+R PL+AI     VI +   G L   +  E           +LD++N+LL+++
Sbjct: 270 VQMVSHELRAPLSAIKMQHTVILDGLAGDLT-EKQRELLVRAHAKIQGLLDLINELLNVA 328

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIA 708
           ++E+G   L   P+SL   +++ + L+Q  A  ++I+++     ++P I AD RS++++ 
Sbjct: 329 RMEAGYCQLEQVPLSLGGVLTDLVELLQTKAANQKIVLQLITPPDLPLIQADRRSMEEVF 388

Query: 709 LNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
           +N+L NAI+++P+GG + IS   + +E + + V DTGVG+   E+ K    F +  + Q 
Sbjct: 389 MNLLCNAINYSPNGGNVKIS-AVSHSEYLEVLVSDTGVGLEPEEIPKIFDKFYRAKHPQT 447

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820
            +  GTGLGL + K +++A+ G   + S P  GT   ++ P   +    D +
Sbjct: 448 RQVIGTGLGLAIVKNLIEAHRGSIQVESQPGVGTTFRVLLPTVSSGQGSDFV 499


>gi|253571977|ref|ZP_04849382.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
 gi|251838574|gb|EES66660.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
          Length = 883

 Score =  315 bits (808), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 97/553 (17%), Positives = 206/553 (37%), Gaps = 38/553 (6%)

Query: 278 INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS----LSAYFDEGENLTPETVDKCPIPF 333
           ++ +     + +  L + +      L  R          A     E L        P   
Sbjct: 348 VDGSASWSDEDYRWLSSLANVISICLELRRAKEKVIFEQAALARSERLFKNIFANIPAGV 407

Query: 334 FVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
            +Y   GNL   N   + +       ++             ++ ++     +  +R+  +
Sbjct: 408 EIYDKEGNLVDLNERDMDILGISDKSEVIGLNFFENPNVDAQILESIRKSSITDFRARYS 467

Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
              A       +  +   + +     +  +          I  ++ +     + +     
Sbjct: 468 FECAR-HTGYYRPLKAGVIELYTKVRKLYDNHGNLTGYILINMDNTERIDALKPISDFEN 526

Query: 453 QLCSILEATSDGIA---IINREGIILSTNRAVSKLFGYPVEDILRKPFTVF------LEQ 503
               I +    G A   ++NR+G          K +   + +    P +        +  
Sbjct: 527 LFLLISDYAKVGYAKLNLLNRQGY-------AIKQWFKNMGEDENTPLSDVVGVYSKMHP 579

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTK---EEKLLSLRIIIKKLPFSSCYS---LT 557
           +  S M  +  E      +    ++ +       E   +   +++               
Sbjct: 580 DDRSRMLAFFEEAKKGKAKAFKGEMRILRPGTKNEWNWVRTNVVLNLYEPEKGQVELIGV 639

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
            +DI+  K+ + KL  AK+ AE+    KS FLA +SHEIRTPL AI+GFS ++ +     
Sbjct: 640 NYDITALKETEAKLIEAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSLMVDTE--- 696

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
                  +Y + ++ + +L+L +++D+LD+SKIE+G  +     V ++    + +  +++
Sbjct: 697 -DMEERRQYMDIVEENNDLLLQLISDILDLSKIEAGTFDFTEREVDVNLLCEDIVLAMRM 755

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737
            A    + I         RI++D   + Q+  N ++NA+ FT  G  I +         +
Sbjct: 756 KA-RPNVEILFDRHLPECRIMSDRNRLHQVISNFVNNALKFTEEG-NIRVGYDQLDEAHL 813

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
              + DTG+G+      +  + F ++ +       GTGLGL + +++V+   G+  + S 
Sbjct: 814 RFYIADTGIGIEPEMQNEIFERFVKLNSFVH----GTGLGLSICRSIVEQLGGEIGVDSE 869

Query: 798 PAKGTLIEIIFPL 810
           P KG+      P+
Sbjct: 870 PEKGSCFWFTLPI 882


>gi|81427691|ref|YP_394689.1| two-component system, sensor histidine kinase [Lactobacillus sakei
           subsp. sakei 23K]
 gi|4104603|gb|AAD10264.1| putative histidine kinase [Lactobacillus sakei subsp. sakei 23K]
 gi|78609331|emb|CAI54377.1| Two-component system, sensor histidine kinase [Lactobacillus sakei
           subsp. sakei 23K]
          Length = 632

 Score =  315 bits (808), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 75/383 (19%), Positives = 160/383 (41%), Gaps = 47/383 (12%)

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
             +L S++   +DG+   +R G I   N           + +L +     L+ +    + 
Sbjct: 259 RRRLDSVMSHMTDGVIATDRRGNITIINETGQDFLNVTSDGVLGQSLLKVLKISEEYTLR 318

Query: 511 HYLT--EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568
             L   +++ LD     +   +        +   +I ++  + +     +HD++E ++ +
Sbjct: 319 DLLETQQVMVLDFSDQQDHDLIL------HVDFSLIQRETGYITGLVCVLHDVTEQQKNE 372

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
            +              + +F++ VSHE+RTPLT++  + E + +  +          +  
Sbjct: 373 RE--------------QREFVSNVSHELRTPLTSVRSYIEALNDGAWQ--DPEVAPNFLK 416

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE------- 681
                 + ++ ++NDLL +S+++ G   ++ E V+L+E     +    +           
Sbjct: 417 VTQEETDRMIRMINDLLSLSRMDQGTAKMNLEFVNLNEFFGYVLDRFDMMIKRDQEHDNN 476

Query: 682 ---------------KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726
                          K+  I   F      +  D     Q+  NI++NAI ++P GG I 
Sbjct: 477 ASPRGTGKLPTDDPNKKYSITRDFTKRDLWVEIDTDKFMQVVDNIMNNAIKYSPDGGVIT 536

Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
                 ++  VIL + D G+G+   +L K    F ++  ++  +  GTGLGL ++K +++
Sbjct: 537 CRL-LETHRHVILSISDQGLGIPRKDLGKIFDRFYRVDKARSRKQGGTGLGLAISKEVIE 595

Query: 787 ANMGKFYIFSTPAKGTLIEIIFP 809
           A+ G+ ++ S   KG+   I  P
Sbjct: 596 AHNGRVWVDSQEGKGSTFYISLP 618


>gi|315649482|ref|ZP_07902567.1| histidine kinase [Paenibacillus vortex V453]
 gi|315274955|gb|EFU38330.1| histidine kinase [Paenibacillus vortex V453]
          Length = 559

 Score =  315 bits (808), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 77/249 (30%), Positives = 132/249 (53%), Gaps = 8/249 (3%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E ++  ++L  AK+ AE     K++FLA +SHEIRTP+  +IG  +++ +          
Sbjct: 147 ELEKINHELVQAKEAAEIAVKAKTEFLAMMSHEIRTPMNGVIGMIDLLMDSEL----QEE 202

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             EYA  I  S + +++I+ND+LD SK+ESGKM L   P  L   V E   L    A++K
Sbjct: 203 QREYATIIRNSADALVNIINDILDFSKMESGKMELEEYPFDLKSCVQEVFGLFSGEASKK 262

Query: 683 RILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQ---IIISTTHTSNEEVI 738
            + +       IP  +  D+  ++Q+ +N++SNA+ FT  GG    + ++        + 
Sbjct: 263 NLQLSYYIEERIPSMVFGDMGRLRQVLVNLVSNAVKFTNEGGVYLVVSLTQVEEDRLTLE 322

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
             V+DTG+G+++ ++++  KPF Q+ +S   +  GTGLGL + +++V    G   + S  
Sbjct: 323 FTVKDTGIGISSEKIDRLFKPFSQLDSSMTRKYGGTGLGLAICRSLVQMMGGDITVESKE 382

Query: 799 AKGTLIEII 807
            KG      
Sbjct: 383 NKGATFVFT 391


>gi|3955036|emb|CAA65047.1| putative sensor kinase [Synechocystis sp. PCC 6803]
          Length = 1138

 Score =  315 bits (808), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 117/751 (15%), Positives = 227/751 (30%), Gaps = 100/751 (13%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH-IDPNNHIGDLLKRQNTWYGKT 147
             D  G +  ++++  +  G    ++IG     VS   H  +        ++    W+G+ 
Sbjct: 347  TDTEGVITYVNDKFVEVSGYSREELIGNTHRLVSSGYHSPEFFQQFWQTIRAGKVWHGQI 406

Query: 148  TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                  G   +V   +  +P    N     ++   I              +  + +F  +
Sbjct: 407  NNRAKAGNTYWVDSTV--VPFLDDNGNP--YQYLAIRFEITSSKQAEKSLRESEARFRMM 462

Query: 208  HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
             +       V  +   +                            + +      L     
Sbjct: 463  ADTSPIMLWVADQDKKMTFVNQS--------------WLEFRGATLAEESGNGYLEGIHP 508

Query: 268  SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
                             ++           + + ++ +   P                  
Sbjct: 509  DDKGHYLGVYSQAFGDPRRFELEYRYRRVDQQYRWIVNVGVPRYL--------------- 553

Query: 328  KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML- 386
                       G       S L +T  K   DI        LL      +        L 
Sbjct: 554  ---------EDGKFMGYVGSCLDITDRKQAQDILQKKLNQILLMRKISQEIRRSLQPTLI 604

Query: 387  ----YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
                 R      A             +   +         Q P      G +   +    
Sbjct: 605  FQTAARQVGNVFAV------------SRCLIHNYSEATTLQVPVVAEYLGGQFTSLL--- 649

Query: 443  NKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
               ++ ++     +I++      +  ++++     T +A  + F       +R  +    
Sbjct: 650  -AGEIAVQQAYDPTIIQGDRAMAVVDLDQDLNSTHT-KAFYQRFQVKSFLAVRTSY---- 703

Query: 502  EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDI 561
                 +     L +     +    E   L +  E+  ++L                    
Sbjct: 704  --QGKANGIIALHQCDRQRVWTADEIELLEAIAEQMGIALAQAALLEKERERRRELA--- 758

Query: 562  SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
               K  + + +     AE  +  K +FLA +SHEIRTP+  +IG SE++         N 
Sbjct: 759  --QKNLELEKATW--AAEAANRAKGEFLAMMSHEIRTPMNGVIGMSELLIMTDL----NL 810

Query: 622  RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
            + ++Y   I +SG  +L I+ND+LD SKIE+ K+ L  +   L   +   + +    A  
Sbjct: 811  QQLDYVQTIRQSGETLLTIINDILDFSKIEADKLVLETQAFELRPLIETVLEMFGPIARA 870

Query: 682  KRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQI--------------- 725
            K + +        P RIL D   ++QI  N++ NA+ FT  G  +               
Sbjct: 871  KHLELTYGIDPQTPARILGDQVRLRQILSNLIGNALKFTEKGEVVLTVKGEPFDPAESYH 930

Query: 726  IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
             I      +  +   +RDTG+G+     ++  K F Q+ +S   +  GTGLGL +++ + 
Sbjct: 931  TILNLPHPSHRICFNLRDTGIGIPLDRQDRLFKSFSQVDSSTTRKYGGTGLGLVISQRLT 990

Query: 786  DANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
                G   + S P  G+       L     P
Sbjct: 991  QMMGGVLTVTSEPGVGSNFRFCI-LTTAQAP 1020



 Score =  107 bits (267), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 44/447 (9%), Positives = 118/447 (26%), Gaps = 34/447 (7%)

Query: 163 LAALPIYSRNREFSGF--------RGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214
           L  +P++  +R F GF        +  G V     +   +  G R       L   +   
Sbjct: 172 LVYVPLFIGDR-FDGFVVGVFQLDQFIGSVRPLSGNKPDQDSGLRS----FGLRIFEGNQ 226

Query: 215 SSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQED 274
                   D          L   N +       +     L      L     S       
Sbjct: 227 LIYNDVPDDWEQDIVVTQELAWANSLPQAEAMTSRWQLQLVPGPILLDQYGSSQWILFSG 286

Query: 275 FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF 334
                           + +++ + S      +          +   +    +D+  I   
Sbjct: 287 LLMAWAVAIAVYYLQKSSKHSEQLSESIKQQQKVEEFLKSTLQELAVQKTALDEAAIVAI 346

Query: 335 VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394
             + G + Y N  F+ ++ Y   + I    G +  L +         +            
Sbjct: 347 TDTEGVITYVNDKFVEVSGYSREELI----GNTHRLVSSGYHSPEFFQQFWQTIRAGKVW 402

Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
                    +    N+  +        +          I  E   ++  ++ +     + 
Sbjct: 403 HGQI---NNRAKAGNTYWVDSTVVPFLDDNGNPYQYLAIRFEITSSKQAEKSLRESEARF 459

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
             + + +   + + +++  +   N++  +  G  + +     +   +  +         +
Sbjct: 460 RMMADTSPIMLWVADQDKKMTFVNQSWLEFRGATLAEESGNGYLEGIHPDDKGHYLGVYS 519

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLS-LRIIIKKLPFSS---CYSLTMHDISEWKQEKNK 570
           +       +  E        +++    + + + +         Y  +  DI++ KQ ++ 
Sbjct: 520 QAF--GDPRRFELEYRYRRVDQQYRWIVNVGVPRYLEDGKFMGYVGSCLDITDRKQAQDI 577

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIR 597
           L                 + ++S EIR
Sbjct: 578 LQKKLNQIL--------LMRKISQEIR 596



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/399 (9%), Positives = 99/399 (24%), Gaps = 21/399 (5%)

Query: 69  DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID 128
           +SE  F        +   W  D    +  +++   +  G    +  G    +        
Sbjct: 454 ESEARFRMMADTSPI-MLWVADQDKKMTFVNQSWLEFRGATLAEESGNGYLEGIHPDDKG 512

Query: 129 PNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNR 188
               +       +    +           Y  I    +P Y  + +F G+   G      
Sbjct: 513 HYLGVYSQ-AFGDPRRFELEYRYRRVDQQYRWIVNVGVPRYLEDGKFMGY--VGSCLDIT 569

Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA 248
                + + ++   +   + +I +      +      +        R    V +++    
Sbjct: 570 DRKQAQDILQKKLNQILLMRKISQEIRRSLQPTLIFQTAA------RQVGNVFAVSRCLI 623

Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
           H      T + P++               I + Q          +  +    +   +  H
Sbjct: 624 HNYSEATTLQVPVVAEYLGGQFTSLLAGEIAVQQAYDPTIIQGDRAMAVVDLDQDLNSTH 683

Query: 309 PSL---SAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365
                          +      K      ++            + L     ++ I    G
Sbjct: 684 TKAFYQRFQVKSFLAVRTSYQGKANGIIALHQCDRQRVWTADEIEL-----LEAIAEQMG 738

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
           ++  L    L +    +   L + +     A+         +   LAM            
Sbjct: 739 IA--LAQAALLEKERERRRELAQKNLELEKATWAAEAANRAKGEFLAMMSHEIRTPMNGV 796

Query: 426 ENMPQNGIEPEDVDTRIN-KRKMEIEVMQLCSILEATSD 463
             M +  I  +    +++  + +      L +I+    D
Sbjct: 797 IGMSELLIMTDLNLQQLDYVQTIRQSGETLLTIINDILD 835


>gi|282918087|ref|ZP_06325837.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           D139]
 gi|282318372|gb|EFB48732.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           D139]
          Length = 608

 Score =  315 bits (808), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 80/388 (20%), Positives = 172/388 (44%), Gaps = 29/388 (7%)

Query: 426 ENMPQNGIEPEDVDTRINKRKM--EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           + + +  +   ++  R+ + +   E E  +L S++   SDGI   +R G I   N    K
Sbjct: 235 DEIGELALAFNNLSKRVQEAQANTESEKRRLDSVITHMSDGIIATDRRGRIRIVNDMALK 294

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           + G   EDI+       L       +        S  L    E+  +        ++   
Sbjct: 295 MLGMAKEDIIGYYMLSVLSLEDEFKLEEIQENNDSFLLDLNEEEGLIAR------VNFST 348

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
           I+++  F + Y   +HD++E +Q + +              + +F+A VSHE+RTPLT++
Sbjct: 349 IVQETGFVTGYIAVLHDVTEQQQVERE--------------RREFVANVSHELRTPLTSM 394

Query: 604 IGFSEVIKNQRFGPLGNPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
             + E ++    G   +     ++ +        ++ +VNDLL +SK+++    ++ E +
Sbjct: 395 NSYIEALEE---GAWKDEELAPQFLSVTREETERMIRLVNDLLQLSKMDNESDQINKEII 451

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
             +  +++ I+  ++ A  K                 D   + Q+  N+++NA+ ++   
Sbjct: 452 DFNMFINKIINRHEMSA--KDTTFIRDIPKKTIFTEFDPDKMTQVFDNVITNAMKYSRGD 509

Query: 723 GQIIISTTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
            ++            + +R++D G+G+   +++K    F ++  ++  +  GTGLGL ++
Sbjct: 510 KRVEFHVKQNPLYNRMTIRIKDNGIGIPINKVDKIFDRFYRVDKARTRKMGGTGLGLAIS 569

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           K +V+A+ G+ +  S   +GT I I  P
Sbjct: 570 KEIVEAHNGRIWANSVEGQGTSIFITLP 597


>gi|71899102|ref|ZP_00681266.1| PAS [Xylella fastidiosa Ann-1]
 gi|71731096|gb|EAO33163.1| PAS [Xylella fastidiosa Ann-1]
          Length = 510

 Score =  315 bits (808), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 94/483 (19%), Positives = 179/483 (37%), Gaps = 35/483 (7%)

Query: 338 HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397
            G     N SF    +  SV          ++           IK           +   
Sbjct: 23  DGIFRLTNASFGRHLRLDSV-------VGESVCGIMPDDGPEYIKRYGGVALSGQRVHFE 75

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
           AR    +W         +         PE      +  +  + +  +R++    ++   +
Sbjct: 76  ARALR-RW---------YSVEVMRVGAPEGRLLGVLFVDITEHKRMERRLAESEVRFNIL 125

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
            +     + + + +G +   N A  + FG  +       +++ L      +    L+  L
Sbjct: 126 ADGLPMPVWVFDAQGGMRFVNTAYGEFFGVDLSSGTVPEWSMVLHPEDVLIFEFKLSAAL 185

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH----DISEWKQEKNKLSH 573
               +  L  +      + +   + +          + + +     D++E  + +     
Sbjct: 186 KT--QSALRALVRARRYDGQWRWIEMSATPRYSPDGHFIGLTGNSPDVTERLEIELAREQ 243

Query: 574 -------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
                  A+  AE  +  K +FL+ +SHE+RTPLT I+G+SE++  +      +P Y   
Sbjct: 244 LLKSERAARNEAENMARLKDEFLSTLSHELRTPLTTILGWSELLLQRI--EEQHPCYKG- 300

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
            + I  S  +   +++D+LD+S +  GKM L  E + L E + E I L +     K   +
Sbjct: 301 LSVIASSAKVQKRLISDMLDLSSMLLGKMQLEMEVLDLVEQIREVIGLYEQVVESKGQRL 360

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
                     +L D   ++QI  N+LSNAI FTP+ G I +       +   + V D+G 
Sbjct: 361 LLRAPEMPCLVLGDATRLRQIFENLLSNAIKFTPTDGCIDVEID-ADGDSFRVSVTDSGD 419

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIE 805
           G+    L      F Q   +      G GLGL + +++V+ + G     S    KG +  
Sbjct: 420 GIAAEFLPHLFSRFRQADGTTTRCHGGLGLGLAIVQSLVEMHGGYVGATSPGLGKGAMFT 479

Query: 806 IIF 808
           +  
Sbjct: 480 VSL 482



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 49/160 (30%), Gaps = 9/160 (5%)

Query: 68  LDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI 127
            +SE  F        +   W  DA G ++ ++    +  G             V     +
Sbjct: 116 AESEVRFNILADGLPMP-VWVFDAQGGMRFVNTAYGEFFGVDLSSGTVPEWSMVLHPEDV 174

Query: 128 DP-NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHV 186
                 +   LK Q+           +G   +  I+++A P YS +  F G  G      
Sbjct: 175 LIFEFKLSAALKTQSALRALVRARRYDG--QWRWIEMSATPRYSPDGHFIGLTG-----N 227

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFS 226
           +    +   +    ++        +    ++ + K +  S
Sbjct: 228 SPDVTERLEIELAREQLLKSERAARNEAENMARLKDEFLS 267



 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/204 (10%), Positives = 54/204 (26%), Gaps = 13/204 (6%)

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL--SHRNHPSLSAYFDEGENLT 322
              +L  Q         +         +          L      H  +     E E   
Sbjct: 63  GGVALSGQRVHFEARALRRWYSVEVMRVGAPEGRLLGVLFVDITEHKRMERRLAESEVRF 122

Query: 323 PETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
               D  P+P +V+   G + + N ++             ++ G           ++  I
Sbjct: 123 NILADGLPMPVWVFDAQGGMRFVNTAYGEFFGVD------LSSGTVPEWSMVLHPEDVLI 176

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT- 440
               L  + +T  A  A +   +++      +      + +     +   G  P+  +  
Sbjct: 177 FEFKLSAALKTQSALRALVRARRYDG-QWRWIEMSATPRYSPDGHFIGLTGNSPDVTERL 235

Query: 441 --RINKRKMEIEVMQLCSILEATS 462
              + + ++        +  E  +
Sbjct: 236 EIELAREQLLKSERAARNEAENMA 259


>gi|281418070|ref|ZP_06249090.1| multi-sensor signal transduction histidine kinase [Clostridium
           thermocellum JW20]
 gi|281409472|gb|EFB39730.1| multi-sensor signal transduction histidine kinase [Clostridium
           thermocellum JW20]
 gi|316939890|gb|ADU73924.1| multi-sensor signal transduction histidine kinase [Clostridium
           thermocellum DSM 1313]
          Length = 589

 Score =  315 bits (808), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 81/392 (20%), Positives = 186/392 (47%), Gaps = 35/392 (8%)

Query: 426 ENMPQNGIEPEDVDTRINK--RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           + + Q  +    + +++ +    +  + ++L SI+E+ ++GI  ++    ++  N A   
Sbjct: 222 DELGQLAVHFNKMASKLERTISDLNTKKIELESIVESITNGIVAVDGNNKVILINPAAFT 281

Query: 484 LFGYPVE-DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
           +F    + +IL       ++    S +N  L + +  +    LE        + ++L + 
Sbjct: 282 VFNLDADAEILGDDIENHIK---NSQINSLLKDAIQKNKP--LEAEVAI---DGRVLLVN 333

Query: 543 IIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
               +   S        + + DI++ ++ +                +++F++ V+HE++T
Sbjct: 334 ASPIRPKDSDIDNSGGIVFIQDITKVRKLE--------------QIRTEFVSNVTHELKT 379

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           P+T+I GF E +KN   G + NP   E +   ID     + +++ND+L +S+IE+   + 
Sbjct: 380 PITSIRGFIETLKN---GAMNNPVVAERFLEIIDIEAERLHELINDILLLSEIETKLKDT 436

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
           + E   L   V +   ++Q  A EK+I +  +  + +  + A++  +KQ+ +N++ N I 
Sbjct: 437 NLEIFDLKSMVDDVFKVMQNIAKEKKISLNNNVRDEVL-MKANINRMKQLIMNLVDNGIK 495

Query: 718 FTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
           +    G + +   +  + +V++ V+DTG+G+ +  + +  + F ++   +     GTGLG
Sbjct: 496 YNVQNGSVSVD-GYREDGKVVISVKDTGIGIPSAHIPRIFERFYRVDKGRSRGMGGTGLG 554

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           L + K +V+   G+  + S   +GT   +  P
Sbjct: 555 LSIVKHIVNLYNGEIKVNSVVGEGTEFIVKIP 586


>gi|218887570|ref|YP_002436891.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218758524|gb|ACL09423.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 1071

 Score =  315 bits (808), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 111/734 (15%), Positives = 234/734 (31%), Gaps = 64/734 (8%)

Query: 115 GMRLCDVSDILHIDPNNHIGDLL-------KRQNTWYGKTTLWPIEGTNLYVPIDLAALP 167
           G     ++  L +D  N + D L          +   G    +  +     V       P
Sbjct: 171 GRVYGVLAAPLRLDQYNPLFDKLNLPPGSVLSVSDHRGVRLAYHPQNDANPV-----GKP 225

Query: 168 IYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ 227
           I              I+++ R   D     +        L+   +     E   Y     
Sbjct: 226 IREE-----------ILNILRTMPDEGLFTRESSDGTVRLYGFTRIRLHPESAPYLNVMV 274

Query: 228 QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE-----------SSLPEQEDFH 276
             P   +    + +           +  T                     ++    E   
Sbjct: 275 GIPEDAVLAPMRAARNHALLLLGGAMAVTLAVAWSIGGRLVARPLSHIAATATRIGEGQL 334

Query: 277 TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS--AYFDEGENLTPETVDKCPIPFF 334
                        G L  +       L+ R     +  A   + E       D       
Sbjct: 335 GARTGIRHDMGEIGQLAFSVDTMAAILASRQGEREAFTAELRDNEARYRAVFDNAMDAIL 394

Query: 335 VYSHGN--LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
           +       +  AN +   + +Y   + +   G     L   +   N         R    
Sbjct: 395 LADADTGIILDANRAAQQIFEYTRDELL---GMHQRQLHPDRTHRNGFGGRFNTLREQPL 451

Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
            I A      ++        M            E      +  +  + R +++++     
Sbjct: 452 EIPAEM---PMRTRTGIERDMLVKAKVLRVGSREV--AVAMLHDITERRQSEQQLREVEA 506

Query: 453 QLCSILEATSDGIAIINRE----GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
           +  SI+E    G+ ++  +      I + N             +L +  T  L     + 
Sbjct: 507 RFRSIVEGAPLGLLLLTLDQAEHLRIEAVNPTADTALHITGRGMLGRRVTEALPGIAATN 566

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568
           +      I       ++               + + + +       ++   D++   + +
Sbjct: 567 LPTIFVGIARKGGEFSVTAHASAGWLPAGWAFVDLWVFRTGNRQ-IAVMFADVTRRTRAE 625

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
           ++L   +  AEK +  KS+F+A +SHE+RTP+  I+G  ++++             +  +
Sbjct: 626 DELRQTRDTAEKANRSKSEFIAVMSHEVRTPINGIMGMLQLLRGSHLSG----EQEDCVD 681

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
               +   +L I++D+LDIS++E+G + L  EP ++ +      +++   A  K +    
Sbjct: 682 TALGASRNLLRILDDILDISRMEAGALPLVEEPFTVAQVTEPVHAMLTPQAKAKGLTFEM 741

Query: 689 SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIII------STTHTSNEEVILRV 741
             A ++P  +  D   ++Q+ +N++SNA+  T +GG + +               + + V
Sbjct: 742 QVAPDLPPELAGDAGRIRQVLVNLVSNAVKCTDTGG-VRVEMYPLPRCGQAGRTCIHMAV 800

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            DTG+G     L    + +     +      GTGLGL + + +V    G   + +TP +G
Sbjct: 801 IDTGIGFAPERLRTLFENYATGSAATAR-PGGTGLGLGIVRRLVLLMGGTICVATTPGEG 859

Query: 802 TLIEIIFPLYDTSH 815
           T   I  PL+  + 
Sbjct: 860 TEFHITLPLHTEAE 873



 Score = 37.7 bits (86), Expect = 8.7,   Method: Composition-based stats.
 Identities = 39/376 (10%), Positives = 95/376 (25%), Gaps = 37/376 (9%)

Query: 90  DAH-GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ-NTWYGKT 147
           DA  G + + +    +       +++GM          + P+    +    + NT   + 
Sbjct: 397 DADTGIILDANRAAQQIFEYTRDELLGM------HQRQLHPDRTHRNGFGGRFNTLREQP 450

Query: 148 TLWPIE-----GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
              P E      T +   + + A  +   +RE +      ++H            + ++ 
Sbjct: 451 LEIPAEMPMRTRTGIERDMLVKAKVLRVGSREVA----VAMLHDITERRQSEQQLREVEA 506

Query: 203 KFSHLHEIKKGHSSV-----EKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257
           +F  + E       +      +         +    L +  +             +  T 
Sbjct: 507 RFRSIVEGAPLGLLLLTLDQAEHLRIEAVNPTADTALHITGRGMLGRRVTEALPGIAATN 566

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
              +         E       +         F  L      + +        +     ++
Sbjct: 567 LPTIFVGIARKGGEFSVTAHASAGWLPAGWAFVDLWVFRTGNRQIAVMFADVTRRTRAED 626

Query: 318 GENLTPETVDKCP------IPFFVYSHGNLFYANPSFLLLTKYKSVD---------DIEI 362
               T +T +K        I    +            L L +   +           +  
Sbjct: 627 ELRQTRDTAEKANRSKSEFIAVMSHEVRTPINGIMGMLQLLRGSHLSGEQEDCVDTALGA 686

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
           +  L  +LD            + L     T    +  +H +   +  +  +TF      +
Sbjct: 687 SRNLLRILDDILDISRMEAGALPLVEEPFTVAQVTEPVHAMLTPQAKAKGLTFEMQVAPD 746

Query: 423 QFPENMPQNGIEPEDV 438
             PE     G   + +
Sbjct: 747 LPPELAGDAGRIRQVL 762


>gi|284037676|ref|YP_003387606.1| PAS/PAC sensor signal transduction histidine kinase [Spirosoma
           linguale DSM 74]
 gi|283816969|gb|ADB38807.1| PAS/PAC sensor signal transduction histidine kinase [Spirosoma
           linguale DSM 74]
          Length = 930

 Score =  315 bits (808), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 117/740 (15%), Positives = 239/740 (32%), Gaps = 54/740 (7%)

Query: 99  SEELPKTIGNYAFK--MIGMRLCDVSDILHIDPNNHIGDLL-----KRQNTWYGKTTLWP 151
           S    + +G    +         D       D       +L       +++      +  
Sbjct: 204 SARFREILGYTLDEFPDTMEAWEDRLYPG--DREALPWHVLDAYRSATRDSHSVAYRIRA 261

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH--- 208
            +GT     +D   L  +S + +         +             +    +  +L    
Sbjct: 262 KDGT-YKHFLDRGRLWQWSADGKP--LLIVSTITDMTNQKTMEETLRLDANRQRNLIANL 318

Query: 209 -------EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
                  + ++    V +   D+F+  + P  LR  +      +   +  +         
Sbjct: 319 QEGILFEDEQRTIVLVNQHFCDLFAIPATPDQLRGMDCSGMAEQSKHYFKEPAVFVDRVA 378

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN-SKESFEYLSHRNHPSLSAYFDEGEN 320
               E      E+    +   + +      +    +   ++Y    +     A     + 
Sbjct: 379 HLLLEQKPVTGEELELADGRIFERDYVPIFMDGVYAGHLWKYADITSRKRNEALAMYQKE 438

Query: 321 LTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
                ++   +    V     + Y N SF  ++ Y + D++        LL+   L   +
Sbjct: 439 KYQRIIENMNLGLLEVDRDDRIVYTNQSFCDMSGY-AYDELVGNIAKDMLLNGQHLDVMS 497

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
                 L        A  A    I   R  +               E +   G+  +   
Sbjct: 498 EKNNSRL------TGAMDAYELAINNKRGEAKWWLISGAPLYADTGEVIGSTGVVLDITR 551

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREG-IILSTNRAVSKLFGYPVEDILRKP-- 496
            +  + ++     +   I E   +   I +      L  N    +  G  VE++ R P  
Sbjct: 552 QKQLESELRESEQRFREIAENVDELFWIRDLHAPKFLYMNPTFERFSGIRVEELYRNPLR 611

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY-- 554
           F  F+ Q+  + +               +         E  +  +R  +  L   +    
Sbjct: 612 FADFVHQDDRAAVLAAFLS-----DEPGMNATFRVVNPEGTIHWVRAKVVLLTDETGVPR 666

Query: 555 --SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK- 611
                  DI+   + ++ L  +     + +  KS F+A  SH+ RTPL AI   +E+I+ 
Sbjct: 667 RRLGVASDITAVIENEHILEASLARERELNGLKSQFIATASHQFRTPLMAITSSAELIRY 726

Query: 612 --NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
                 G L  P +++ A  I +  + + +++ D L +SKIE GK+ L  E + +     
Sbjct: 727 YSALPTGTLKPPLFLKQAEAILKQVSWLEELMTDTLTLSKIEEGKVTLRREELDVVGLCQ 786

Query: 670 EAI-SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
             I       ++ +++ +    +     + AD   +  +  N+LSNA  +  +  Q+ + 
Sbjct: 787 TLIGDTFSERSDGRQVDLVVVGSP--VSVRADRTLLSHVLQNLLSNAFKYAATNPQLTVQ 844

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                   V+L V D G+G+   EL      F +   S     +G+GLGL + +  V   
Sbjct: 845 Y---DPGRVMLAVEDKGIGIPANELPLLFGKFFRA--SNVHSIQGSGLGLAICREYVQLL 899

Query: 789 MGKFYIFSTPAKGTLIEIIF 808
            G   + ST   GT   I+ 
Sbjct: 900 GGTLEVASTEGVGTTFRILL 919



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 46/402 (11%), Positives = 111/402 (27%), Gaps = 48/402 (11%)

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY 246
            R+      L   L  + S +     G      +     S  SP     +       T +
Sbjct: 81  LRLTRLDDELVFSLQPQLSGIDTPTAGTLQQTDQVLQAVSPTSPTGLALLPPGGQPETIF 140

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
               +D L  E   L   +                Q  + Q    L++ S  ++EY    
Sbjct: 141 QPTVEDGLSQEVEQLRAEKRQLEAVIRQQQEEIAQQQQRCQV--ALESVSDATWEY---N 195

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
                         +   T+D+ P                ++         + +      
Sbjct: 196 LRTGEVLRSARFREILGYTLDEFPDTM------------EAWEDRLYPGDREALP----W 239

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
             L      + ++      +   D T      R    QW                +   +
Sbjct: 240 HVLDAYRSATRDSHSVAYRIRAKDGTYKHFLDRGRLWQW----------------SADGK 283

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
            +       +  + +  +  + ++  +  +++    +GI   + +  I+  N+    LF 
Sbjct: 284 PLLIVSTITDMTNQKTMEETLRLDANRQRNLIANLQEGILFEDEQRTIVLVNQHFCDLFA 343

Query: 487 YP--VEDILRKPFTVFLEQN-----TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
            P   + +     +   EQ+      P+V    +  +L      T E+       + ++ 
Sbjct: 344 IPATPDQLRGMDCSGMAEQSKHYFKEPAVFVDRVAHLLLEQKPVTGEE---LELADGRIF 400

Query: 540 SLRIIIKKLPFS-SCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
               +   +    + +     DI+  K+ +    + K+  ++
Sbjct: 401 ERDYVPIFMDGVYAGHLWKYADITSRKRNEALAMYQKEKYQR 442



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 38/378 (10%), Positives = 90/378 (23%), Gaps = 40/378 (10%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCD-VSDILHIDPNNHIGDLLKRQNTWYGK 146
            +D    +   ++      G    +++G    D + +  H+D  +   +          +
Sbjct: 453 EVDRDDRIVYTNQSFCDMSGYAYDELVGNIAKDMLLNGQHLDVMSEKNNSRLTGAMDAYE 512

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
             +    G   +  I  +  P+Y+   E  G  G  +V          +  +  +++F  
Sbjct: 513 LAINNKRGEAKWWLI--SGAPLYADTGEVIGSTG--VVLDITRQKQLESELRESEQRFRE 568

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL------TEYYAHKDDVLKTEKYP 260
           + E       +       F   +P        +V  L         + H+DD        
Sbjct: 569 IAENVDELFWIRDLHAPKFLYMNPTFERFSGIRVEELYRNPLRFADFVHQDDRAAVLAAF 628

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
           L    E  +             +  +     L + +      L   +  +     +    
Sbjct: 629 LSD--EPGMNATFRVVNPEGTIHWVRAKVVLLTDETGVPRRRLGVASDITAVIENEHILE 686

Query: 321 LTPETVDKCPI----------------PFFVYSHGNLFYANPSFLL------LTKYKSVD 358
            +     +                      + S   L     +         L   ++  
Sbjct: 687 ASLARERELNGLKSQFIATASHQFRTPLMAITSSAELIRYYSALPTGTLKPPLFLKQAEA 746

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD----RTCIAASARLHTIQWNRENS-LAM 413
            ++    L  L+             V L R +      C        + + +     L +
Sbjct: 747 ILKQVSWLEELMTDTLTLSKIEEGKVTLRREELDVVGLCQTLIGDTFSERSDGRQVDLVV 806

Query: 414 TFIPFEKANQFPENMPQN 431
              P              
Sbjct: 807 VGSPVSVRADRTLLSHVL 824


>gi|88857651|ref|ZP_01132294.1| putative sensor protein [Pseudoalteromonas tunicata D2]
 gi|88820848|gb|EAR30660.1| putative sensor protein [Pseudoalteromonas tunicata D2]
          Length = 648

 Score =  315 bits (808), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 96/364 (26%), Positives = 170/364 (46%), Gaps = 16/364 (4%)

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           ++L+  S G+ I++ E  I   N  ++       E+++ +       Q   S +NH L  
Sbjct: 9   AVLDQLSIGVFIVDAEFNIQFWNTWMANSSQLSAENVVGQSLFNLYPQLINSRLNHALIA 68

Query: 516 ILSLDLRQTLEKI-----TLGSTKEEKLLSLRIIIKKLPF-SSCYSLTMHDISEWKQEKN 569
                L   L ++          + ++L+   I +K      SC  + + D+S     + 
Sbjct: 69  SKEQKLPSVLSRVFNASPLPLFNQAKQLIKQSITVKPASMCESCSIIQVIDVSNAVAREK 128

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
            L       ++  + KS FLA +SHEIRTPL  +IG  E++ ++      + +  ++   
Sbjct: 129 ALEKQVLERQRAEAAKSAFLANMSHEIRTPLNGVIGMLELVADEPL----SDKLQQFLQI 184

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
              S   +L I+ND+LD SKIE+GK+++      L     + I+     AN+K I +   
Sbjct: 185 ASNSAESLLFIINDILDFSKIEAGKVDIDPVEFELLTFFEDIIASFIPAANKKAISLIFD 244

Query: 690 FAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT----SNEEVILRVRDT 744
            ++     + AD + V+QI +N+LSNAI FT  G ++++            +++ +V DT
Sbjct: 245 SSHLETTLVRADKQRVRQILVNLLSNAIKFTEQG-EVVVEVYLQKIDSQTAQLVCKVLDT 303

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G+  + + K  +PF Q  +S   R  GTGLGL +AK +     G+  + S   KG+  
Sbjct: 304 GIGIEAHVIAKLFEPFQQSDSSISRRFGGTGLGLAIAKQLCHLMGGELTLSSKVGKGSCF 363

Query: 805 EIIF 808
           E   
Sbjct: 364 EFEI 367


>gi|189468086|ref|ZP_03016871.1| hypothetical protein BACINT_04480 [Bacteroides intestinalis DSM
           17393]
 gi|189436350|gb|EDV05335.1| hypothetical protein BACINT_04480 [Bacteroides intestinalis DSM
           17393]
          Length = 928

 Score =  315 bits (808), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 96/526 (18%), Positives = 200/526 (38%), Gaps = 38/526 (7%)

Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSVDDI 360
           Y+            D  E L        P+   +Y+   +    N   + +   K     
Sbjct: 423 YMDVTEMRRTYMALDHSEKLLRNLFSNIPVGVEIYNKDGILIDLNNKDMEIFGVKDKSST 482

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ----WNRENSLAMTFI 416
                     + P +  +   +   +   D    +       +       ++  + +   
Sbjct: 483 LGVN----FYENPNVPSDIRER---VKIEDEFDFSQDYEFSNVSDYYESEKKGGIELYTK 535

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476
             +  +   +N     I  ++ +   +  ++         I E    G      +  +L+
Sbjct: 536 VSKIYDNQGDNNGFVLINIDNTERISSINRIRDFENFFLLISEYAKVGY----AKLNLLT 591

Query: 477 TNRAVSKLFGYPVEDILRKPFTVF------LEQNTPSVMNHYLTEILSLDLRQTLEKITL 530
            N    K +   + +    P          +       +  +  +    +      ++ +
Sbjct: 592 RNGYAIKQWYKNMGEDEDTPLAEVVGIYNKMHPQDRVRVLAFFEKAKRGEATSFKSEMRV 651

Query: 531 GSTK---EEKLLSLRIIIKKLPFSSCYS---LTMHDISEWKQEKNKLSHAKKIAEKESSH 584
                  +   + + +++ +   ++         +DI+E K+ + KL  AK+ AE+    
Sbjct: 652 LKPGTLNQWNWVRMNVVLNRYDPANGLIELIGVNYDITELKETEQKLIEAKEKAEEADRL 711

Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
           KS FLA +SHEIRTPL AI+GFS ++             +EYA  ++ +  L+L +++D+
Sbjct: 712 KSAFLANMSHEIRTPLNAIVGFSSLLVETE----DPEEKLEYAKMVEENNELLLQLISDI 767

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704
           LD+SKIE+G  +  F    ++    + +  +QL      + +          I++D   +
Sbjct: 768 LDLSKIEAGTFDFKFRDFDINTLCGDLVRSMQLRVKP-GVELIFESTLPQCVIVSDPNRL 826

Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764
            Q+  N ++NAI FT +G  I I      ++ + + V DTG+G+      K    F ++ 
Sbjct: 827 HQVVSNFINNAIKFTTTGS-IRIGYDKPDDKHLRVYVTDTGIGIAPEACRKIFDRFIKLN 885

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           +      +GTGLGL ++K++++   G   + S   KG+    I PL
Sbjct: 886 SF----VQGTGLGLSISKSIIEQLGGTIGVNSELGKGSTFWFILPL 927


>gi|77918268|ref|YP_356083.1| two-component sensor histidine kinase PhoR [Pelobacter carbinolicus
           DSM 2380]
 gi|77544351|gb|ABA87913.1| PAS/PAC sensor signal transduction histidine kinase [Pelobacter
           carbinolicus DSM 2380]
          Length = 591

 Score =  315 bits (808), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 97/530 (18%), Positives = 202/530 (38%), Gaps = 45/530 (8%)

Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP-----IPFFVYSHGNLFYANP 346
           + +  ++     +H     +S                       +   V S   +     
Sbjct: 93  VGDTREDPRRMENHAGRQEVSQALRGEVAQAVHYSRTLQKHMMYVALPVRSQDQVIGVVR 152

Query: 347 SFLLLTKYK-SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405
           +   +   +  ++ +     +S LL A           + L R     +    R      
Sbjct: 153 TARAVNDIRWELEAVYRDVVISGLLVALAAGLVG----LYLSRRLSRPLELMKRGAEQFA 208

Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465
                  ++     +       M     + +D    I ++       +  ++L +  +G+
Sbjct: 209 QGRFDHQLSASGSREICALAGAMNVMAGQLDDRIRTIIRQ-----RNEQQAVLTSMVEGV 263

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
             ++ +  I+  NRA + LF    E +  +     L     + +  ++   LS  +    
Sbjct: 264 LALDNDERIIHLNRAAADLFQVSPEAVEGRGIQEVLR---KAGLQRFVERALSSRVPVEG 320

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
           E +  G+  + + L     + +          + ++D++   + +              +
Sbjct: 321 EVVLPGTDGD-RFLQAHGTVLQEEEGRGIGVLIVLNDVTRLHRLE--------------N 365

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
            + DF+A VSHE++TP+T I G  E + +           + +   I +    +  I++D
Sbjct: 366 IRRDFVANVSHELKTPITGIKGSVETLLDGAMER--PEDAVRFLRIIAKQAERLNAIIDD 423

Query: 644 LLDISKIESGK----MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA 699
           LLD+S+IE G+    + L   PV     +  A+    + A +K I +  S A  I     
Sbjct: 424 LLDLSRIEQGQNDQALELSMAPV--VPVLQAAVHACDMKARDKSIELVLSCAAEI-SAEI 480

Query: 700 DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKP 759
           +   ++Q  +N++ NAI ++ +GG + I     + + V + VRD G G+ N  L +  + 
Sbjct: 481 NPHLLEQAVVNLVDNAIKYSDAGGTVWIEARRDARQTV-IEVRDQGCGIDNEHLPRLFER 539

Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           F ++  ++  R  GTGLGL + K +V A+ G+  + S   KG++  II P
Sbjct: 540 FYRVDKARSRRAGGTGLGLSIVKHIVQAHGGRVTVDSEAGKGSVFRIILP 589



 Score = 48.5 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/325 (8%), Positives = 73/325 (22%), Gaps = 17/325 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D    +  ++             + G  + +V     +     +   L  +    G+  
Sbjct: 266 LDNDERIIHLNRAAADLFQVSPEAVEGRGIQEVLRKAGLQ--RFVERALSSRVPVEGEVV 323

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           L    GT+    +      +          RG G++    +  +      RL+       
Sbjct: 324 L---PGTDGDRFLQAHGTVLQEEEG-----RGIGVL----IVLNDVTRLHRLENIRRDFV 371

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
                             +      +             A + + L      LL      
Sbjct: 372 ANVSHELKTPITGIKGSVETLLDGAMERPEDAVRFLRIIAKQAERLNAIIDDLLDLSRIE 431

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP-ETVD 327
             + +    +++              + K   + +      +     +   +L     V+
Sbjct: 432 QGQNDQALELSMAPVVPVLQAAVHACDMKARDKSIELVLSCAAEISAEINPHLLEQAVVN 491

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
                      G   +         +   ++  +   G+              +      
Sbjct: 492 LVDNAIKYSDAGGTVWI--EARRDARQTVIEVRDQGCGIDNEHLPRLFERFYRVDKARSR 549

Query: 388 RSDRTCIAASARLHTIQWNRENSLA 412
           R+  T +  S   H +Q +      
Sbjct: 550 RAGGTGLGLSIVKHIVQAHGGRVTV 574


>gi|172058670|ref|YP_001815130.1| integral membrane sensor signal transduction histidine kinase
           [Exiguobacterium sibiricum 255-15]
 gi|171991191|gb|ACB62113.1| integral membrane sensor signal transduction histidine kinase
           [Exiguobacterium sibiricum 255-15]
          Length = 847

 Score =  315 bits (808), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 109/627 (17%), Positives = 223/627 (35%), Gaps = 46/627 (7%)

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPP--PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
           +  + K  +++ ++   + S +     P  + ++++  LT  +      +   K  +L  
Sbjct: 235 ISRVTKQVNTLSRDSALLASGEDINTIPLPKRQDELYILTTSFNRMATSIADNKVHMLAK 294

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
            E    +QE+          +++        +  S ++L +RN  + +    E     PE
Sbjct: 295 NEELQAQQEELVAQQEELQAQQEELEEALEITLRSEQHLKYRNELTETLASRETLTAYPE 354

Query: 325 TVDKCPIPFFVYSHGNLFYANPSFLLLT---KYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
            ++K  +       G L + +   +  T           ++     +L    ++      
Sbjct: 355 IIEKL-VAITHSEIGALLFLDQHDVRSTIEYGMTEEMVGQLVKDDQSLFHRARVLKRPVH 413

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNREN-------SLAMTFIPFEKANQFPENMPQNGIE 434
               +                +     N          + +       Q  + +  +   
Sbjct: 414 SSKQVAHDSPLPYPYYMYEVAVPILDPNEEQIIACVYLVRYRDAFTPEQMGDILSFSHQL 473

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
              +       KM  E  +   +L +  + +  I  E   L  N  + KLF     +   
Sbjct: 474 SLSLMRMGIYEKMMHEKNKTGQLLNSIREAVVYIEHESDELLVNEPLMKLFPEVQTEYQD 533

Query: 495 KPFTVFLE---------QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
                             + P     Y+ +I+  +L +  + + +        + +    
Sbjct: 534 DSNLSSFRQAMSALSAIIDEPEPFEQYIEQIVEQNLPK--DSLLVSIRSHSAYIQIYAEK 591

Query: 546 KKLPFS-SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
            ++        L + D++                 +    K +F++ VSHE+RTPL++I 
Sbjct: 592 IQINQVWVGTMLVLRDVT--------------KETEADRMKEEFVSTVSHELRTPLSSIY 637

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           GF+E++ N+   P   P+  +Y   I      +  +VND LD+ ++ES +         L
Sbjct: 638 GFTELMLNREIDP---PKQRKYLTTIHSETGRLTTLVNDFLDVQRMESSEQRYQMATFDL 694

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724
            +  +E I           +      A     I AD   +KQ+  N+LSNAI ++P GG 
Sbjct: 695 VQLAAELIDFHDASHTTHELSFE---AVGPIMIDADAEKIKQLLNNLLSNAIKYSPDGGN 751

Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
           + I      +    + +RD G+G+    + K    F ++ NS+  +  GTGLGL + K +
Sbjct: 752 VAIRIE-NHDGFAEITIRDQGIGIPQEAMSKLFDKFYRVDNSETRKIGGTGLGLSICKEI 810

Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPLY 811
           V  + G   + ST   G+   I FP+ 
Sbjct: 811 VKHHNGTIDVESTIGAGSTFTIRFPIA 837


>gi|118579570|ref|YP_900820.1| multi-sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
 gi|118502280|gb|ABK98762.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
          Length = 983

 Score =  315 bits (808), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 89/667 (13%), Positives = 197/667 (29%), Gaps = 60/667 (8%)

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY 246
            R       + K  ++K+  L E++     +     +                       
Sbjct: 202 VRFRRQAVEVLKESERKYRQLFEVQSDAILMID--GETCDILEANASAIQLYGFGREEFL 259

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ---NNSKESFEYL 303
                ++        +  +E                    + F +       + +     
Sbjct: 260 KRKSFELSADSPQTCMPLQELKRHTPLSLQRKKDGTVFPVEIFTSRYTWKQKAMQIAVIR 319

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEI 362
                        E         D  PI    +    ++   NP+   +  Y + + I  
Sbjct: 320 DITERTQAEEALQENRERLQLQFDHMPIACIAWGTDYSIQSWNPAAEKVFGYTAQEAIGK 379

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
               + L+  P++ D        L  +D T          +       +   +      +
Sbjct: 380 --SANDLIVPPEIQDEVNAVWQRLLENDET---VHCTHQNMTK-GRQKIFCKWTKTPLRD 433

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQ--------------LCSILEATSDGIAII 468
                +    +  +    R   + +   V +              L +++++  D I   
Sbjct: 434 IRGNIIGFISMAEDITQLRNTDQALRETVREYQDLALKLDEKQNFLATLMDSIPDLIFYK 493

Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528
           + E   L  N+A     G   E+++          +  +       ++++ +L +  E+ 
Sbjct: 494 DSERRYLGCNKAFESFAGRTEEELVGCTDFDLFGHDVGAFFRERDLQVMAQNLARQNEEW 553

Query: 529 TLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKES-- 582
                 + + + L  +                   DI+E  +   +  + +    +    
Sbjct: 554 VDY--PDGRHILLDTLKTPFHDHQGRSLGLIGISRDITERHRADTERKNLEGQLYQSQKM 611

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
                    V+H+    LT IIG++E++               +   +  +     ++  
Sbjct: 612 EAIGQLAGGVAHDFNNILTVIIGYAEILL---LSMEREHALRYHVEQVLTAAGRAAELTA 668

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702
            LL  S+    K  LH + + L E       +++    E  I  +T        ILAD  
Sbjct: 669 GLLAFSR----KQLLHMKQLDLGEVARGLRKMLRRLIPE-DIDFKTIIVEKELTILADKG 723

Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTH--------------TSNEEVILRVRDTGVGM 748
            ++Q+ +N+++NA    P GG + +                         + + DTG GM
Sbjct: 724 QIEQVIMNLVTNAKDAMPKGGSLTLEIAPATMDEQFLQQHGFGEPGGYACITIADTGHGM 783

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
                ++  +PF     +    G+GTGLG  +   +V  + G   + S P +G+   I  
Sbjct: 784 DEETRKRLFEPFFTTKEA----GKGTGLGTAIIYGIVKQHNGFISVDSEPGRGSTFSIYL 839

Query: 809 PLYDTSH 815
           PL   + 
Sbjct: 840 PLIAATE 846



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/362 (9%), Positives = 84/362 (23%), Gaps = 42/362 (11%)

Query: 65  TNYLDSENTFVFDPIPRTVRF--------TWNIDAHGYLKEISEELPKTIGNYAFKMIGM 116
           T    +E     +     ++F         W  D    ++  +    K  G  A + IG 
Sbjct: 322 TERTQAEEALQENRERLQLQFDHMPIACIAWGTDY--SIQSWNPAAEKVFGYTAQEAIGK 379

Query: 117 RLCDVSDILHI-DPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREF 175
              D+     I D  N +   L   +     T     +G    +       P+       
Sbjct: 380 SANDLIVPPEIQDEVNAVWQRLLENDETVHCTHQNMTKGR-QKIFCKWTKTPLRDIRGNI 438

Query: 176 SGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH--------------EIKKGHSSVEKEK 221
            GF    +        +     +   +++  L               +        +  +
Sbjct: 439 IGF--ISMAEDITQLRNTDQALRETVREYQDLALKLDEKQNFLATLMDSIPDLIFYKDSE 496

Query: 222 YDIFSQQSPP--PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT--SEESSLPEQEDFHT 277
                          R + ++   T++     DV    +   L   ++  +   +E    
Sbjct: 497 RRYLGCNKAFESFAGRTEEELVGCTDFDLFGHDVGAFFRERDLQVMAQNLARQNEEWVDY 556

Query: 278 INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP---------ETVDK 328
            +              ++   S   +      +     D                E + +
Sbjct: 557 PDGRHILLDTLKTPFHDHQGRSLGLIGISRDITERHRADTERKNLEGQLYQSQKMEAIGQ 616

Query: 329 CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388
                  +   N+      +  +       +  +   +  +L A   +       +   R
Sbjct: 617 LAGGVA-HDFNNILTVIIGYAEILLLSMEREHALRYHVEQVLTAAGRAAELTAGLLAFSR 675

Query: 389 SD 390
             
Sbjct: 676 KQ 677



 Score = 43.9 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 19/187 (10%), Positives = 51/187 (27%), Gaps = 5/187 (2%)

Query: 39  SKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEI 98
           S  E+            +  +E       LD +  F+   +       +  D+       
Sbjct: 443 SMAEDITQLRNTDQALRETVREYQDLALKLDEKQNFLATLMDSIPDLIFYKDSERRYLGC 502

Query: 99  SEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNL 157
           ++      G    +++G    D+    +          ++ +      +  +   +G   
Sbjct: 503 NKAFESFAGRTEEELVGCTDFDLFGHDVGAFFRERDLQVMAQNLARQNEEWVDYPDGR-- 560

Query: 158 YVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSV 217
           ++ +D    P +       G    GI       +      K L+ +     +++      
Sbjct: 561 HILLDTLKTPFHDHQGRSLGL--IGISRDITERHRADTERKNLEGQLYQSQKMEAIGQLA 618

Query: 218 EKEKYDI 224
               +D 
Sbjct: 619 GGVAHDF 625


>gi|284054265|ref|ZP_06384475.1| two-component hybrid sensor and regulator [Arthrospira platensis
           str. Paraca]
          Length = 823

 Score =  315 bits (808), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 95/396 (23%), Positives = 182/396 (45%), Gaps = 32/396 (8%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           ++   +++  +  L SI++  +DG+ + + EG I  TN A++ LF     DI  K  +  
Sbjct: 209 KMATVELQETLANLTSIIDHIADGLLVTDAEGKITRTNPALANLFALGDLDIRGKLCSEA 268

Query: 501 LEQNTPSVMNHYLTEILSLDLRQT-LEKITLGSTKEEKLLSLRIIIKKLPF--SSCYSLT 557
              +  +++     + L     +  LE   +G    + +L                  + 
Sbjct: 269 FSGDVLNLLLQSKAQPLDAFQGEVKLEGDRIGQAVAKGVLKQVSSPSGSEELIYIGSVVL 328

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
             DI+  K+                  K+DF++ VSHE+RTPLT+++GF+++I+ +    
Sbjct: 329 FRDITAEKEI--------------DRMKTDFISTVSHELRTPLTSVLGFAKLIQKKLDDV 374

Query: 618 LGN-------------PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           +                +     + I   G  + +++ND+LDI+K+E+GK   H EP+S+
Sbjct: 375 ILPFIKTDDTKINRAVNQVASNVDIIVSEGIRLTNLINDVLDIAKMEAGKTEWHIEPLSI 434

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724
              V  AIS      N K I +  +  +N+P I+ D   + Q+ +N++SNA+ FT +G  
Sbjct: 435 KTVVERAISATTSLFNNKPIKLIVNMPDNLPDIMGDNDKLMQVFINLISNAVKFTETG-N 493

Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
           + +         + + V+DTG G+   + E+  + F Q+ N+   + +GTGLGLP+ + +
Sbjct: 494 VTLKL-MAVKSAIKVSVKDTGCGIDAADREQVFEKFKQVGNTLTNKPQGTGLGLPICQEI 552

Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820
           +  + G  ++ S    G+      PL D     + +
Sbjct: 553 IQHHGGSIWVESQVGVGSTFYFTLPLPDDQDIQNAV 588


>gi|197124838|ref|YP_002136789.1| histidine kinase [Anaeromyxobacter sp. K]
 gi|196174687|gb|ACG75660.1| histidine kinase [Anaeromyxobacter sp. K]
          Length = 461

 Score =  315 bits (808), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 82/254 (32%), Positives = 135/254 (53%), Gaps = 2/254 (0%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E + +  KL  +    ++    KS+FLA +SHE+RTPLT++IG+SE++     GPL    
Sbjct: 197 ELQDKNQKLEDSYAKLKELDRLKSNFLATMSHELRTPLTSVIGYSEMMLEGLGGPLTAE- 255

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             EY   I   G  +L ++  +LDISKIE+G++ L    V   + + +A++ +   A +K
Sbjct: 256 QREYLGIIMEKGENLLQLITSILDISKIEAGRVRLVLSEVDAVQLMRDAVATLLPIARKK 315

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
            + +       +PRI AD   ++Q  +N+ SNA+ FTP GG I +S      E + + V 
Sbjct: 316 GLKVSCDTTP-LPRIHADRDKLRQCLVNLCSNAVKFTPPGGSITVSAEVLPAERLAIHVV 374

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D+G+G+    L K    F Q+  S      G GLGL + K+ V+A+ G+  + S    G+
Sbjct: 375 DSGIGIPEEHLGKVFDVFYQVDGSSTREYGGAGLGLAIVKSFVEAHGGEIRVRSAAGTGS 434

Query: 803 LIEIIFPLYDTSHP 816
           +  ++ P+  T  P
Sbjct: 435 VFTVLLPIRATPAP 448


>gi|294498010|ref|YP_003561710.1| two-component sensor histidine kinase KinE [Bacillus megaterium QM
           B1551]
 gi|294347947|gb|ADE68276.1| two-component sensor histidine kinase KinE [Bacillus megaterium QM
           B1551]
          Length = 726

 Score =  315 bits (808), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 113/764 (14%), Positives = 242/764 (31%), Gaps = 61/764 (7%)

Query: 61  SVSNTNYLDSENTFVFDPIPRTVRFTWN--------IDAHGYLKEISEELPKTIGNYAFK 112
           S+S    L SE         + +R  +N         D +  +   +E           +
Sbjct: 8   SMSPHRELTSEAAQKQQGELQQLRAIFNDVLDAIVVFDEYFQVINANESACGLFEKTKDE 67

Query: 113 MIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172
           ++  ++ D       D        L  ++ +  +  +    G   +V             
Sbjct: 68  LLTHQMKDFLMYFPYDMIEAYYPALLEESYFKYEGAMTLRSGMMKHVEFTSHKH------ 121

Query: 173 REFSGFRGFGIV--HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP 230
              S   G  +                      F  +         +      +      
Sbjct: 122 ---SHMSGIIVCTFRDITQHKMMENERFISHHMFMDVFNEAVDGIVIFDRTGQLIDANPS 178

Query: 231 --PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288
                   + ++ + T     +       K    T  +      E    +     T  ++
Sbjct: 179 FCERLNYTRAQLLTKTLEELVEPTYHYKVKKLWRTLHQEGKTSGELPIRLENGDVTFFEF 238

Query: 289 FGTLQNNSKESFEYLSHRNHPSL-SAYFDEGENLTPETVDKCPIPFFVY-SHGNLFYANP 346
             T    S+     +       L        E       +       ++   G +  AN 
Sbjct: 239 TTTANIYSQYYMSIMRDVTEKRLMEQQLLRSEKNFRAIFENAIEAILIWRDDGEILNANL 298

Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH-TIQW 405
           +     +            L+ L+ +   +  +      L            R       
Sbjct: 299 ASSRTFELP----------LNKLIGSNLYTFIDTKSFSALKVLQTFQTKGEIRNQLPFYM 348

Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465
                  + F   +   +         I     +    ++++     +   I   + DG+
Sbjct: 349 PNGEIKQLEFTGKKGIIEGDH----LTIFRNISERTKIEQELRNNEEKFRQIFNGSIDGL 404

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
            + + +  I+  N ++  +     E+I       F+      V+  +   I         
Sbjct: 405 VLWDGKRNIIDVNSSLCDILELSKEEICAHSMKDFISSANLDVVIEHKETIEQKGEA--- 461

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
           E      T  EK+ ++    KK      Y   + D++E  Q + ++  +  +        
Sbjct: 462 EGEITYVTGNEKVKNIEFSTKKDILPGLYMTLLRDVTERNQMQEQIRKSDTL-----QVV 516

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
               A ++HEIR P+TA+ GF +++++          +  Y + I      +  I+ + L
Sbjct: 517 GQLAAGIAHEIRNPMTALKGFVQLLESSI-----QEDHSLYFDIIKSELKRIETIITEFL 571

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
            ++K ++    + FE  +L   V E I L+   A  + I    S +  +P +  +   +K
Sbjct: 572 VLAKPQA----VKFEKKNLAAVVKETIDLLNAQALLENIQFELSVSPQLPMVYCEPNQIK 627

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           Q+ +N++ NAI  T +GG+II+    T    V + +RD G GM    +++  +PF     
Sbjct: 628 QVLINVIKNAIEVTSNGGRIIVEVYSTEPHYVTVSIRDQGDGMPEERIKRLGEPFYTT-- 685

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
               + +GTGLGL ++  +++ + G+  + S   +GT   +I P
Sbjct: 686 ----KEKGTGLGLMVSYKIIEEHKGRIEVESKIGEGTAFHVILP 725



 Score = 70.4 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 53/152 (34%), Gaps = 4/152 (2%)

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
               + P    T    +K + E+ QL +I     D I + +    +++ N +   LF   
Sbjct: 5   GAMSMSPHRELTSEAAQKQQGELQQLRAIFNDVLDAIVVFDEYFQVINANESACGLFEKT 64

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            +++L      FL      ++  Y   +L        +     + +   +  +     K 
Sbjct: 65  KDELLTHQMKDFLMYFPYDMIEAYYPALLE---ESYFKYEGAMTLRSGMMKHVEFTSHKH 121

Query: 549 PFSSCYSL-TMHDISEWKQEKNKLSHAKKIAE 579
              S   + T  DI++ K  +N+   +  +  
Sbjct: 122 SHMSGIIVCTFRDITQHKMMENERFISHHMFM 153


>gi|253569669|ref|ZP_04847078.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
 gi|251840050|gb|EES68132.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
          Length = 635

 Score =  315 bits (808), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 110/497 (22%), Positives = 185/497 (37%), Gaps = 20/497 (4%)

Query: 315 FDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
             E        +    I  + Y    G   + +  F      K    +     ++     
Sbjct: 17  IRENSQKILSVLAAHQIALWEYDIPTGKCSFTDDYF-RTLGLKEAGVV--FKDINDFYHF 73

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
               D NA +            A+  ++  +  + E           K N+  +      
Sbjct: 74  AYPEDINAYQTAFAKMLASESKASQIQVRCVGEHGEVIWLEDHFLSYKGNEEGDPDKLLA 133

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
                      ++ ++        I+EA  + I I +    I     A   +  +PVE +
Sbjct: 134 YTVNVTSQCEKEQHIKHLEEHNRKIIEALPEFIFIFDENFFITDVLMAPGTILLHPVEVL 193

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
                          +    + E L     + +E         +     RI        +
Sbjct: 194 KGADGRSIYSPEVSDLFLCNIRECLKDGNLKEIEYPLEV-EGSKHYFQARIAPF---EGN 249

Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
                +HDI +  +   +L  AK+ AE     KS FLA +SHEIRTPL AI+GFSE++  
Sbjct: 250 TVLALIHDIGDRIRRSEELIEAKRRAEDADRMKSVFLANMSHEIRTPLNAIVGFSEIM-- 307

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
                       EY   I ++ NL+L ++ND+LD+S+IESGK  +HF+ V +   V E  
Sbjct: 308 --VLTENEEEKHEYLEIIQKNSNLLLQLINDILDLSRIESGKSEMHFQQVEIAGLVDEVE 365

Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
            + QL      + ++            D   V Q+  N LSNAI  T +G  I +     
Sbjct: 366 KVHQLKMKL-NVDLKVVRPQGEFWTSTDRNRVMQVLFNFLSNAIKNTETGS-ITLGLK-Q 422

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
             + + L V DTG G+   +L +    F ++        +GTGLGL + K++V+   G+ 
Sbjct: 423 EGDWLKLFVSDTGCGIPEEKLPQIFTRFEKL----NDFVQGTGLGLSICKSIVERLGGRI 478

Query: 793 YIFSTPAKGTLIEIIFP 809
            + S   +G+   +  P
Sbjct: 479 EVSSELGQGSTFALYLP 495


>gi|206975846|ref|ZP_03236757.1| sensory box histidine kinase YycG [Bacillus cereus H3081.97]
 gi|217962958|ref|YP_002341536.1| sensory box histidine kinase YycG [Bacillus cereus AH187]
 gi|222098942|ref|YP_002533000.1| sensory box histidine kinase yycg [Bacillus cereus Q1]
 gi|206745940|gb|EDZ57336.1| sensory box histidine kinase YycG [Bacillus cereus H3081.97]
 gi|217065919|gb|ACJ80169.1| sensory box histidine kinase YycG [Bacillus cereus AH187]
 gi|221243001|gb|ACM15711.1| sensory box histidine kinase YycG [Bacillus cereus Q1]
 gi|324329416|gb|ADY24676.1| sensory box histidine kinase YycG [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 613

 Score =  315 bits (808), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 84/372 (22%), Positives = 158/372 (42%), Gaps = 25/372 (6%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +  +   E E  +L S+L   +DG+   +R+G I+  N    K+     E  L +     
Sbjct: 258 QQARSSTESERRKLSSVLSHMTDGVIATDRKGDIILLNDPAEKMLNVSRETALDQSVLEV 317

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
           L       ++H   E  S+ L  +                  +I K+   ++     ++D
Sbjct: 318 LGIQEEFTLDHLYEEPDSVLLDFSTRNEPYILRAS-----FSVIQKETGKANGLIAVLYD 372

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           ++                E+    + +F+A VSHE+RTPLT +  + E + +  +     
Sbjct: 373 VT--------------EQERIERERREFVANVSHELRTPLTTMRSYLEALTDGAWQDPNI 418

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
                +          ++ +VN LL +SK++S +  L  E V   +  +  I   +  + 
Sbjct: 419 APQ--FLTVTQEETERMIRLVNALLQLSKLDSTEHRLMKEWVDFTDFFNNIIDRFE-MSK 475

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV-IL 739
           E+ +  + SF+     I  D   + Q+  NI+SNA+ ++P GG +          E+  +
Sbjct: 476 EQNVSFKRSFSKKSRFIDMDTDKITQVLYNIISNALKYSPEGGTVT--YRLRDRGELLEI 533

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V D G+G+    ++K  + F ++  ++  +  GTGLGL +AK M++A+ G  +  S   
Sbjct: 534 SVSDQGMGIPKENVDKIFERFYRVDKARSRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEG 593

Query: 800 KGTLIEIIFPLY 811
           KGT I    P+ 
Sbjct: 594 KGTTIYFTLPMA 605


>gi|283852012|ref|ZP_06369287.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283572562|gb|EFC20547.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 543

 Score =  315 bits (808), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 95/398 (23%), Positives = 163/398 (40%), Gaps = 16/398 (4%)

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
            + +  P  +         ++ R+       E  +L    + +  GI I +  G IL  N
Sbjct: 4   TRTDSGPGPLAAARTRVAALEARVADLLARQERCEL--FFQHSVMGILIGDAAGRILDAN 61

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
                L GY   ++  K     +  +    +        +  L ++         K    
Sbjct: 62  PRALALLGYAAGELCGKNIRDIVHPDDQQAV-SVDAGPQAARLGRSFSIERRWRRKNGSW 120

Query: 539 LSLRIIIKKLPFSSCYSLT-MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
           L +++   +L  +S      + DI+  K  +     A  +AE  S  KS FLA +SHEIR
Sbjct: 121 LPVQVDFSQLDAASGLFQVMIQDITARKAAEEATIAALALAETASQAKSAFLANMSHEIR 180

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TPL  ++G  +++     G    P   +Y      S + +L I++D+LDIS ++SG+M L
Sbjct: 181 TPLNGVMGMLQLLA----GTPTTPEQADYLATAMDSASGLLRILSDVLDISHLDSGRMVL 236

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAI 716
             E  +L + +    +     A  K +      A + P  +  D   V+QI  N+ +NAI
Sbjct: 237 ADERFALTDVLEPVAASFAHEAALKSLAFSRRVAPDTPDELRGDPGRVRQILYNLTANAI 296

Query: 717 HFTPSGGQIIISTTHTSNE------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
            +TPSG ++ +       E       +   V DTG+G+     E+  + F Q   S    
Sbjct: 297 KYTPSG-EVRLEVAPVPGEADAAGATLEFLVADTGIGIAPAMQEQVFEIFSQADPSVTRS 355

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
             GTG+GL + K + D   G+  + S    GT + +  
Sbjct: 356 YGGTGVGLAIVKGLTDLMGGRVTLCSQEGFGTEVRVRL 393



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 25/245 (10%), Positives = 64/245 (26%), Gaps = 19/245 (7%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG--DLLKRQNTWYGKT 147
           DA G + + +      +G  A ++ G  + D+         +        +   ++  + 
Sbjct: 52  DAAGRILDANPRALALLGYAAGELCGKNIRDIVHPDDQQAVSVDAGPQAARLGRSFSIER 111

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF--GIVHVNRVDNDPRALGKRLDKKFS 205
                 G+ L V +D +         +     G    ++                     
Sbjct: 112 RWRRKNGSWLPVQVDFS---------QLDAASGLFQVMIQDITARKAAEEATIAALALAE 162

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
              + K    +           ++P   +    ++ + T     + D L        +  
Sbjct: 163 TASQAKSAFLANMSH-----EIRTPLNGVMGMLQLLAGTPTTPEQADYL-ATAMDSASGL 216

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
              L +  D   ++  +         L +  +      +H       A+       TP+ 
Sbjct: 217 LRILSDVLDISHLDSGRMVLADERFALTDVLEPVAASFAHEAALKSLAFSRRVAPDTPDE 276

Query: 326 VDKCP 330
           +   P
Sbjct: 277 LRGDP 281



 Score = 41.2 bits (95), Expect = 0.85,   Method: Composition-based stats.
 Identities = 13/162 (8%), Positives = 35/162 (21%), Gaps = 13/162 (8%)

Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE---TVDKCPIPFFVYSH-GNLFYA 344
               + +S       +     +L A   +                +   +    G +  A
Sbjct: 1   MSETRTDSGPGPLAAARTRVAALEARVADLLARQERCELFFQHSVMGILIGDAAGRILDA 60

Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
           NP  L L  Y + +     G     +  P      ++             +        +
Sbjct: 61  NPRALALLGYAAGEL---CGKNIRDIVHPDDQQAVSVDAGPQAARLGRSFSIE---RRWR 114

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
               + L +     +             +  +    +  +  
Sbjct: 115 RKNGSWLPVQVDFSQLDAASG---LFQVMIQDITARKAAEEA 153


>gi|196228647|ref|ZP_03127513.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
 gi|196226928|gb|EDY21432.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
          Length = 882

 Score =  315 bits (808), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 101/639 (15%), Positives = 203/639 (31%), Gaps = 54/639 (8%)

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
           L +      E       ++               +      S    +    D       +
Sbjct: 152 LLRNIMENVEDLVSVVDLQGRVVLSSPSHRKLFGMATPAIGSDFLAHVHPIDQDRIKGVF 211

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
                E S    +      +      +    T+ +        L      +     ++  
Sbjct: 212 ERTIEEGSGRAVEYRMLLPDGGVRFLEARGKTMSDPGGGKQSVLWVARDITERRLAEQQI 271

Query: 320 NLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
                 +D+      V      + + N S   L  + + + +      + LL   ++   
Sbjct: 272 LEQAALLDEARDAICVNDLDQRILFWNKSAERLYGWNANEALGRN--ANQLLCQDRV--- 326

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
                +M  ++          LH       + L +        ++         I  +  
Sbjct: 327 ----ALMALKTLIQKGEWHGELHQSTRAGMH-LVVASRWTLIRDEIGAPKSILVINTDIT 381

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
           +++  ++K+E +     ++L+   D I + +    I+  N   S+L+G+  E+ + +   
Sbjct: 382 ESKKAEQKIEEQ----AALLDKARDAILVCDLNQSIVYWNEGASRLYGWAPEEAVGRQVH 437

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----Y 554
             L    P+        +                T++ + L ++     +  +S      
Sbjct: 438 EILFGKEPADWTGIRRAVKEKGE---WIGELRQQTRQGRELVVQCRQTLVLDASGLPTSV 494

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+ + +    +++              ++H++   L  I+   EVI+N  
Sbjct: 495 LYINSDITEQKKMEAQFLRTQRM-----ESIGALAGGIAHDLNNVLGPIMMAVEVIQNDP 549

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
             P            +  S     ++V  +L  ++   G+  +   P    + VSE + L
Sbjct: 550 RNPGN----KGLLELVGTSAKRGSELVKQILSFARGIDGEKTILKMP----QLVSEVVKL 601

Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT---- 730
                    I +R+  A N+P++  D   + QI LN+  NA      GG I I       
Sbjct: 602 ASDTFPR-DITVRSKVAENLPQVEGDATQMHQILLNLFVNARDAMTRGGSISIDVGAVTL 660

Query: 731 -------HTS---NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
                  +      + V ++V DTG G+    L K  +PF     +    G+GTGLGL  
Sbjct: 661 DRRLTKFYRDPVSGQFVEIKVSDTGSGIPADVLPKIFEPFFTTKEA----GKGTGLGLST 716

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819
              +V A+ G   + S   KGT   I  P      P D 
Sbjct: 717 VLGIVKAHGGFLEVASEAGKGTTFFIYLPATGIKTPADA 755



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/378 (7%), Positives = 80/378 (21%), Gaps = 33/378 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147
           +D  G +   S    K  G      IG         +  D         ++  +    + 
Sbjct: 167 VDLQGRVVLSSPSHRKLFGMATPA-IGSDFLAHVHPIDQDRIKGVFERTIEEGSGRAVEY 225

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFG-IVHVNRVDNDPRALGKRLDKKFSH 206
            +   +G   ++  +     +        G +    +                       
Sbjct: 226 RMLLPDGGVRFL--EARGKTMSDPGG---GKQSVLWVARDITERRLAEQQILEQAALLDE 280

Query: 207 LHEI------KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
             +        +      K    ++   +     R  N++             L  +   
Sbjct: 281 ARDAICVNDLDQRILFWNKSAERLYGWNANEALGRNANQLLCQDRVALMALKTLIQKGE- 339

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
                            + +           +++        L      + S   ++   
Sbjct: 340 ---WHGELHQSTRAGMHLVVASRW-----TLIRDEIGAPKSILVINTDITESKKAEQKIE 391

Query: 321 LTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
                +DK      V   + ++ Y N     L  +   + +              L    
Sbjct: 392 EQAALLDKARDAILVCDLNQSIVYWNEGASRLYGWAPEEAVGRQ-------VHEILFGKE 444

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
                 + R+ +        L          L +        +          I  +  +
Sbjct: 445 PADWTGIRRAVKEKGEWIGELRQQTRQG-RELVVQCRQTLVLDASGLPTSVLYINSDITE 503

Query: 440 TRINKRKMEIEVMQLCSI 457
            +  + +  +   ++ SI
Sbjct: 504 QKKMEAQF-LRTQRMESI 520



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/238 (10%), Positives = 69/238 (28%), Gaps = 10/238 (4%)

Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA------SARLHTIQWNRE 408
           ++   +        ++    L   +  + + L R  R  +              ++  R 
Sbjct: 49  ETFQTLLEKEEADLIISDFSLPGYDGGRALELAREMREEVPFIFFSGTLGEEAAVESLRN 108

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468
            +         +                    R+ + ++      L +I+E   D ++++
Sbjct: 109 GATDYILKQRPERLVAAVRRALKDAAARRARERMVE-ELHERDGLLRNIMENVEDLVSVV 167

Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528
           + +G ++ ++ +  KLFG     I    F   +       +       +     + +E  
Sbjct: 168 DLQGRVVLSSPSHRKLFGMATPAI-GSDFLAHVHPIDQDRIKGVFERTIEEGSGRAVEYR 226

Query: 529 TLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
            L      + L  R      P            DI+E +  + ++     + ++    
Sbjct: 227 MLLPDGGVRFLEARGKTMSDPGGGKQSVLWVARDITERRLAEQQILEQAALLDEARDA 284


>gi|55823081|ref|YP_141522.1| sensor histidine kinase [Streptococcus thermophilus CNRZ1066]
 gi|13324643|gb|AAK18825.1|AF327739_2 Hpk2 [Streptococcus thermophilus]
 gi|55739066|gb|AAV62707.1| sensor histidine kinase (homolog to HK02/MicB Spn & HK02 Sth & VicK
           Spy) [Streptococcus thermophilus CNRZ1066]
          Length = 446

 Score =  315 bits (808), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 87/378 (23%), Positives = 159/378 (42%), Gaps = 35/378 (9%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           R+    +  E  +L S+L   SDG+   NR G I   N    +L     E   +      
Sbjct: 82  RLTHENLIQEKNRLSSVLSYMSDGVIATNRLGQITMINSTAQRLLNLDRETATQMSILDI 141

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SL 556
           L+   P   +  L         +T E         ++ ++LR+    +   S +      
Sbjct: 142 LDGENPYTYSELL--------SKTPEIHLSRRDANDEFVTLRVNFALIRKESGFISGLVA 193

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            +HD +E ++E+ +                 F++ VSHE+RTPLT++  + E +     G
Sbjct: 194 VLHDATEQEKEERERRL--------------FVSNVSHELRTPLTSVKSYLEAL---DDG 236

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV- 675
            L       +        N ++ +++DLL +S+I++    L+ E  +    ++  ++   
Sbjct: 237 ALNEEIAPNFIKVSLDETNRMMRMISDLLALSRIDNKSTQLNVEMTNFTAFMTYILNRFG 296

Query: 676 ----QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
               Q     K   I   +  N   +  D   + Q+  NIL+NAI ++P GG+I +S   
Sbjct: 297 QIKSQETNPGKSYEIIRDYPVNSIWVEIDTDKMTQVIDNILNNAIKYSPDGGKITVSMKT 356

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
           T   ++I+ + D G+G+   +L      F ++  ++     GTGLGL +AK +V  + G 
Sbjct: 357 TDT-QLIVSISDQGLGIPKKDLPLIFDRFYRVDKARSRAQGGTGLGLSIAKEIVKQHNGF 415

Query: 792 FYIFSTPAKGTLIEIIFP 809
            +  S   KG+   I+ P
Sbjct: 416 IWAKSEYGKGSTFTIVLP 433


>gi|239628811|ref|ZP_04671842.1| two-component system protein sensor histidine kinase [Clostridiales
           bacterium 1_7_47_FAA]
 gi|239518957|gb|EEQ58823.1| two-component system protein sensor histidine kinase [Clostridiales
           bacterium 1_7_47FAA]
          Length = 984

 Score =  315 bits (808), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 110/506 (21%), Positives = 204/506 (40%), Gaps = 33/506 (6%)

Query: 335 VYSHGNLFYANPSFLLLTKYKSVD-DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393
           V  H ++ +AN  +  L  Y   + +                + +     +    +    
Sbjct: 224 VDEHFSVVWANDFYYQLIGYTKPEYEARFHNHCDEYFMDNLETWDILCNKIDNMSAAGE- 282

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
            +    L  ++    +S  +  + F                 +  +    ++   +    
Sbjct: 283 DSFETYL-PLKLPDGSSRWVKLVDFFTNEYQDGIQMAYTTMIDVTELLQAQQDKSVAYEH 341

Query: 454 LCSIL---EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
           +   +       D + +I+    I          F   +E +    F   L+  +  V+ 
Sbjct: 342 VPGFIVKYRVLPDRLIMIDASSRI-------KDFFDVDLEHLADTDFMGVLQPESRQVIE 394

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII---IKKLPFSSCYSLTM---HDISEW 564
             L E+   +  + L++      K  +   L++    I  +     Y +      DI+E 
Sbjct: 395 ALLPELRRREALE-LDESIRVKDKHGRDCWLQLHGTCIDAIADDPVYLVVFIDITDITEL 453

Query: 565 KQEK-------NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
           ++ +         L+ A + A+  ++ KS+FL+R+SH+IRTP+  I G +E I +     
Sbjct: 454 RKLQHQLEERTEMLNTALEAAKLANAAKSEFLSRMSHDIRTPMNVIAGMTE-IADAHLQ- 511

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
               R  +  + I  S + +L ++ND+LD+S+IESGK+++H  P+SL + V E I +   
Sbjct: 512 -DPERVKDCLHKIRLSSHHLLGLINDVLDMSQIESGKVSIHMAPLSLPDLVREIIMITLP 570

Query: 678 YANEKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT-HTSNE 735
               KR   +    N       +D   ++QI LN+LSNA  FTP  GQI+       +N 
Sbjct: 571 NVRAKRQKFKVHLMNVRQEHFYSDELRLRQILLNLLSNASKFTPENGQIVFEVEQLENNA 630

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            +   V DTG G+     E   + F +  +S+  R EG+GLGL + K + +   G   + 
Sbjct: 631 ALSFTVSDTGPGIKEDFQEHIFETFARERDSRTDRIEGSGLGLAIVKRLTELMDGDIILG 690

Query: 796 STPAKGTLIEIIFPLYDTSHPH-DCI 820
           S P +GT   +  P+     P  +CI
Sbjct: 691 SLPGQGTTFRVTLPMQHIPVPPIECI 716



 Score = 43.1 bits (100), Expect = 0.20,   Method: Composition-based stats.
 Identities = 25/196 (12%), Positives = 54/196 (27%), Gaps = 19/196 (9%)

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK----------MEIEV 451
            + +   +   +                      +  +  + +++          M  E 
Sbjct: 22  PMVYPDGSPFWIKLQAAFTEEYMDGYRVAYTTMVDVTEMMLAQKEQMRAQQNYETMTREQ 81

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE--DILRKPFTVFLEQNTPSVM 509
             L S L   S    +++     +  N    +L GYP    + L          N P   
Sbjct: 82  EMLMSAL-NVSVSSHLVDEHFTCIWANEFYYRLIGYPKPKYESLFHNHADEYYANNPEGW 140

Query: 510 NHYLTEILS--LDLRQTLEKITLGSTKEEKLLSL-RIIIKKLPFSSCY---SLTMHDISE 563
           +    ++ S         E I     ++     +  +      +   Y      M D++E
Sbjct: 141 DLLTRKVTSVLEKGEDKYEMIVPMKYEDGSSYWVKLVSFFTDEYVDGYRTSYTVMTDVTE 200

Query: 564 WKQEKNKLSHAKKIAE 579
             Q KN+L    +  +
Sbjct: 201 LVQTKNELEMMMRAMK 216


>gi|116627885|ref|YP_820504.1| sensor histidine kinase [Streptococcus thermophilus LMD-9]
 gi|116101162|gb|ABJ66308.1| Signal transduction histidine kinase [Streptococcus thermophilus
           LMD-9]
 gi|312278466|gb|ADQ63123.1| Sensor protein [Streptococcus thermophilus ND03]
          Length = 446

 Score =  315 bits (808), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 87/378 (23%), Positives = 159/378 (42%), Gaps = 35/378 (9%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           R+    +  E  +L S+L   SDG+   NR G I   N    +L     E   +      
Sbjct: 82  RLTHENLIQEKNRLSSVLSYMSDGVIATNRLGQITMINSTAQRLLNLDRETATQMSILDI 141

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SL 556
           L+   P   +  L         +T E         ++ ++LR+    +   S +      
Sbjct: 142 LDGENPYTYSELL--------SKTPEIHLSRRDANDEFVTLRVNFALIRKESGFISGLVA 193

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            +HD +E ++E+ +                 F++ VSHE+RTPLT++  + E +     G
Sbjct: 194 VLHDATEQEKEERERRL--------------FVSNVSHELRTPLTSVKSYLEAL---DDG 236

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV- 675
            L       +        N ++ +++DLL +S+I++    L+ E  +    ++  ++   
Sbjct: 237 ALNEEIAPNFIKVSLDETNRMMRMISDLLALSRIDNKSTQLNVEMTNFTAFMTYILNRFG 296

Query: 676 ----QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
               Q     K   I   +  N   +  D   + Q+  NIL+NAI ++P GG+I +S   
Sbjct: 297 QIKSQETNPGKSYEIIRDYPVNSIWVEIDTDKMTQVIDNILNNAIKYSPDGGKITVSMKT 356

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
           T   ++I+ + D G+G+   +L      F ++  ++     GTGLGL +AK +V  + G 
Sbjct: 357 TDT-QLIVSISDQGLGIPKKDLPLIFDRFYRVDKARSRAQGGTGLGLSIAKEIVKQHNGF 415

Query: 792 FYIFSTPAKGTLIEIIFP 809
            +  S   KG+   I+ P
Sbjct: 416 IWAKSEYGKGSTFTIVLP 433


>gi|304379967|ref|ZP_07362696.1| sensor histidine kinase [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|304341547|gb|EFM07457.1| sensor histidine kinase [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
          Length = 608

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 79/388 (20%), Positives = 171/388 (44%), Gaps = 29/388 (7%)

Query: 426 ENMPQNGIEPEDVDTRINKRKM--EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           + + +  +   ++  R+ + +   E E  +L S++   SDGI   +R G I   N    K
Sbjct: 235 DEIGELALAFNNLSKRVQEAQANTESEKRRLDSVITHMSDGIIATDRRGRIRIVNDMALK 294

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           + G   EDI+       L       +        S  L    E+  +        ++   
Sbjct: 295 MLGMAKEDIIGYYMLSVLSLEDEFKLEEIQENNDSFLLDLNEEEGLIAR------VNFST 348

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
           I+++  F + Y   +HD++E +Q + +              + +F+A VSHE+RTPLT++
Sbjct: 349 IVQETGFVTGYIAVLHDVTEQQQVERE--------------RREFVANVSHELRTPLTSM 394

Query: 604 IGFSEVIKNQRFGPLGNPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
             + E ++    G   +     ++ +        ++ +VNDLL +SK+++    ++ E +
Sbjct: 395 NSYIEALEE---GAWKDEELAPQFLSVTREETERMIRLVNDLLQLSKMDNESDQINKEII 451

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
             +  +++ I+  +   + K                 D   + Q+  N+++NA+ ++   
Sbjct: 452 DFNMFINKIIN--RHEMSTKDTTFIRDIPKKTIFTEFDPDKMTQVFDNVITNAMKYSRGD 509

Query: 723 GQIIISTTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
            ++            + +R++D G+G+   +++K    F ++  ++  +  GTGLGL ++
Sbjct: 510 KRVEFHVKQNPLYNRMTIRIKDNGIGIPINKVDKIFDRFYRVDKARTRKMGGTGLGLAIS 569

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           K +V+A+ G+ +  S   +GT I I  P
Sbjct: 570 KEIVEAHNGRIWANSVEGQGTSIFITLP 597


>gi|42522578|ref|NP_967958.1| phosphate regulon sensor protein phoR [Bdellovibrio bacteriovorus
           HD100]
 gi|39575110|emb|CAE78951.1| Phosphate regulon sensor protein phoR [Bdellovibrio bacteriovorus
           HD100]
          Length = 477

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 88/414 (21%), Positives = 180/414 (43%), Gaps = 23/414 (5%)

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME--IEVMQLCSILE 459
            I   R     +     + A+    ++ +  +  + +  ++  RK        +  + + 
Sbjct: 80  RISSKRTFGSLVKEQEDDLADDETADISELELALDRIHRKMKSRKARYLQSQEESQAFMS 139

Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL 519
           A ++G+  ++ +  IL  N   +  F    + +  +   +     +  V+  +   I   
Sbjct: 140 AVAEGLVSVSLDEKILYFNSQFAAQF-LSSDLLNGQILRLKDAIRSSDVLEGFGKTIKIG 198

Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKK 576
            +++   K+      + +  ++ +   +   +          HDI+E K+ +        
Sbjct: 199 KVQRFTVKLPTLIDNQPRFFAVSVNPIRNEKTQEIYGVVGIFHDITEMKRAE-------- 250

Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
                   + DF+   SHE+RTPLT+I G+ + +K          +  ++ + + R+ + 
Sbjct: 251 ------QIRMDFVGNASHELRTPLTSIKGYVDTLKED-VKTGQIQQAGKFLDIVSRNIDR 303

Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696
           ++D+VND+L I+ +E+    L  E +         +S + + A EK I IR +   ++P 
Sbjct: 304 LMDLVNDMLSINTLEASNSELKLEMIHPLAISEHVVSELAVMAAEKNITIRVN--GDVPP 361

Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKA 756
            LAD R V+Q+  N++SNA+ + PSG  I I       E +ILRV D G G+    L++ 
Sbjct: 362 FLADARKVEQVLRNLVSNAVKYIPSGKTIQIRWERDIKEYIILRVIDDGQGIPEQHLDRL 421

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            + F +I   +     GTGLGL + K ++ ++ G   + S   +G+     FP+
Sbjct: 422 FERFYRIDKGRTRDAGGTGLGLAIVKHIMQSHGGTVAVKSIVDQGSEFICSFPI 475


>gi|320354372|ref|YP_004195711.1| PAS/PAC sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
            2032]
 gi|320122874|gb|ADW18420.1| PAS/PAC sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
            2032]
          Length = 1596

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 114/761 (14%), Positives = 234/761 (30%), Gaps = 63/761 (8%)

Query: 96   KEISEELPKTIGNYAFKMIGMRLC---DVSDILH-IDPNNHIGDLLKRQNTWYGKTTLWP 151
               S  + +  G  A +          D             I    + ++ +        
Sbjct: 717  IFWSGRIKEITGYSAEEFNSHGFTGWVDCIHPDDRATTLGLIEIARRDRSLYSATYRFRK 776

Query: 152  IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
             + T   V  + A L  Y         R  G +             +R + + +H     
Sbjct: 777  ADQTYYQVYEEGAYL--YDEQGA--AVRMLGTLKDVTAQKAAEEALRRSEARLAHAFSAT 832

Query: 212  KGHSSVE-KEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK-------DDVLKTEKYPLLT 263
                     +    +        L   +    +T     +           +T +  L +
Sbjct: 833  TDAIWERYPKTTRTYYSPRWYEILGYDDGELPMTADSWTRLCHPEDYPAAAETLRQLLSS 892

Query: 264  SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL-----SHRNHPSLSAYFDEG 318
             + +    +      + +          ++ +   +   +        N         E 
Sbjct: 893  PDNAQHVAEYRMRHRDGHWVWIASRGKVVERDKDGNPLLITGINSDITNRKLAEFALRES 952

Query: 319  ENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
            E       +       +     +   N   L + +      +    GLS    +P L  +
Sbjct: 953  ERRYRTLFEAGSDAILILKEDVVVDCNLKTLEMFRGTRDQLV----GLSPQFFSPALQPD 1008

Query: 379  NAIKP---VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
                    +                   + + +   +   +     +          I  
Sbjct: 1009 GRTFAEHGMGYIHEALQGRPQQFEWVQARLDGDLFYSDMRMSAVDLSGETCL---QCIVR 1065

Query: 436  EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
            +  + +  +  +     +  S      +GI ++N  G IL  NR+  +  GY  E++++K
Sbjct: 1066 DITEWKQTESALRESEFRFRSFFNTNPEGILLVNFHGTILDANRSFLRESGYSHEEMVQK 1125

Query: 496  PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR---IIIKKLPFSS 552
             F  F+     + +   +    S  + Q        +TK   L+ +     ++     + 
Sbjct: 1126 HFRKFVPSADQARIVEAILAFKS-GIAQDQPIRFSYTTKNGTLVPVTAKGWLVVDEQSNP 1184

Query: 553  CYSLTM-HDISEWKQEKNKLSHAKKIAEKESS--HKSDFLARVSHEIRTPLTAIIGFSEV 609
             Y     H++S+      + +  +K                 ++H+    L  IIG++E 
Sbjct: 1185 MYIGVFIHNLSKELALAEEKAALEKQVIHAQRSEAIGTLAGGIAHDFNNILGGIIGYTE- 1243

Query: 610  IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
            +   R     + +  +    +   GN   ++V  +L  S+  +  M    EP  L   + 
Sbjct: 1244 LALYRADSAMDAKLRDNLQRVLEGGNRAKNLVQQILRFSRHTATVM----EPFDLVPVIE 1299

Query: 670  EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT-PSGGQIII- 727
            E+I L+        I IR        RIL D   + Q+ +N+ +NA+H     GGQ+ I 
Sbjct: 1300 ESIQLLSSTLPS-TITIRHQLERVPGRILGDSTQIHQVVMNLATNALHAMREKGGQLTIN 1358

Query: 728  -------------STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
                         S T  + E + L+V DTG GM+    E+  +P+    N      EGT
Sbjct: 1359 VKKVFLDAPRQFFSMTIAAGEYIQLQVIDTGCGMSPAVRERIFEPYFTTKN----VNEGT 1414

Query: 775  GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            GLG+ +   ++ ++ G   + S    GT  +I  PL   + 
Sbjct: 1415 GLGMAVVLGIIKSHQGLIEVESAIGAGTRFDIYLPLTQENA 1455



 Score =  124 bits (312), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 61/520 (11%), Positives = 145/520 (27%), Gaps = 28/520 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMI-GMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144
            + ID  G +   ++   +     A ++  G+    ++             L+ +     
Sbjct: 202 VYEIDRDGRVVSANKTALRHFNRTAAELDQGIDFFSLAPPQLHPKIKQRLQLMFKGQQL- 260

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            + T +P+ G +      L      S + E  G R   I                 ++++
Sbjct: 261 -EPTEYPLIGKDGARGAALVYSQPISVDDEVVGVRSVYI--DISERKAIEERLLSSEQRY 317

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHL-RMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
             L E       +      I           R +  V  +             +     T
Sbjct: 318 RALFESASDAILLLAGGVVIECNDEALRLFQRSRQDVLGVGFAALSPPTQRDGQPSVSRT 377

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQ------NNSKESFEYL---SHRNHPSLSAY 314
            +  +  +Q+     + +           +        +      +              
Sbjct: 378 EQWIAAAKQQSRQCFDWDILLPDSSVLETEVSFNGFELAGAPHLLVLLRDMTERNQNRRA 437

Query: 315 FDEGENLTPETVDKCPIPFFVY--SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
            +E E+      +  P    +     G    ANP++  L+  +  DDI        +   
Sbjct: 438 LEERESAWRAIFEHAPYGIVINRLRDGVYLDANPAYEQLSGGRRRDDILGKTPEDFI--- 494

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
           P        + + L  +  +     A       +      +       A   P  +    
Sbjct: 495 PSSQHQKIQENMALLLATGSLHNQEAIGS--SPDGSERHILYSSAVFHAGGEPCAV---S 549

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
           +  +  + +  + ++      L S+ +A   G+ I+ RE      N  ++ + GY   D+
Sbjct: 550 MLIDITERKKMEEQLRRNENVLSSLFQAVPVGLVIL-RERRFQVVNEQMTTITGYAAVDL 608

Query: 493 LRKPFTVFLE-QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK-KLPF 550
           L +   +  E +     +   L + L       +E          + +SL      +   
Sbjct: 609 LNRSSRLLYETEEEFVRVGRALYDTLWQRGNSYVETQFKRQDGSLRHVSLFAAPLDRNNP 668

Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
            +  ++ + DISE       L  +++   + +      + 
Sbjct: 669 EAGAAVAIQDISERVAMLQSLRDSEQRFRQTAELSGQLIY 708



 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 52/396 (13%), Positives = 102/396 (25%), Gaps = 9/396 (2%)

Query: 193 PRALGKRLDKKFSHLH-EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD 251
                + L   F  +  EI +    V   K  +         L       SL     H  
Sbjct: 187 SEQRYQHLLDSFPVVVYEIDRDGRVVSANKTALRHFNRTAAELDQGIDFFSLAPPQLHPK 246

Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
              + +        E +                  Q              Y+      ++
Sbjct: 247 IKQRLQLMFKGQQLEPTEYPLIGKDGARGAALVYSQPISVDDEVVGVRSVYIDISERKAI 306

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIE-IAGGLSTLL 370
                  E       +       + + G +   N   L L +    D +      LS   
Sbjct: 307 EERLLSSEQRYRALFESASDAILLLAGGVVIECNDEALRLFQRSRQDVLGVGFAALSPPT 366

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
                   +  +  +     ++          I     +   +         +       
Sbjct: 367 QRDGQPSVSRTEQWIAAAKQQSRQCFDWD---ILLPDSS--VLETEVSFNGFELAGAPHL 421

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI-INREGIILSTNRAVSKLFG-YP 488
             +  +  +   N+R +E       +I E    GI I   R+G+ L  N A  +L G   
Sbjct: 422 LVLLRDMTERNQNRRALEERESAWRAIFEHAPYGIVINRLRDGVYLDANPAYEQLSGGRR 481

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            +DIL K    F+  +    +   +  +L+       E I       E+ +     +   
Sbjct: 482 RDDILGKTPEDFIPSSQHQKIQENMALLLATGSLHNQEAIGSSPDGSERHILYSSAVFHA 541

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
               C    + DI+E K+ + +L   + +       
Sbjct: 542 GGEPCAVSMLIDITERKKMEEQLRRNENVLSSLFQA 577



 Score =  114 bits (286), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 54/521 (10%), Positives = 135/521 (25%), Gaps = 38/521 (7%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL---LKRQNTWYGKT 147
           A G + E ++E  +        ++G+    +S     D    +      +        + 
Sbjct: 332 AGGVVIECNDEALRLFQRSRQDVLGVGFAALSPPTQRDGQPSVSRTEQWIAAAKQQSRQC 391

Query: 148 TLWPI---EGTNLYVPIDLAALPIYSRNREFSGFRGFGIV-HVNRVDNDPRALGKRLDKK 203
             W I   + + L   +            E +G     ++       N  R   +  +  
Sbjct: 392 FDWDILLPDSSVLETEVSFNG-------FELAGAPHLLVLLRDMTERNQNRRALEERESA 444

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPP-----PHLRMKNKVSSLTEYYAHKDDVLKTEK 258
           +  + E       + + +  ++   +P         R  + +    E +       K ++
Sbjct: 445 WRAIFEHAPYGIVINRLRDGVYLDANPAYEQLSGGRRRDDILGKTPEDFIPSSQHQKIQE 504

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL---QNNSKESFEYLSHRNHPSLSAYF 315
              L     SL  QE   +          Y   +             +       +    
Sbjct: 505 NMALLLATGSLHNQEAIGSSPDGSERHILYSSAVFHAGGEPCAVSMLIDITERKKMEEQL 564

Query: 316 DEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
              EN+        P+   +         N     +T Y +VD +  +   S LL   + 
Sbjct: 565 RRNENVLSSLFQAVPVGLVILRERRFQVVNEQMTTITGYAAVDLLNRS---SRLLYETEE 621

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
                 + +      R       +         +   ++          PE         
Sbjct: 622 EFVRVGRALYDTLWQRGNSYVETQFKR---QDGSLRHVSLFAAPLDRNNPEA-GAAVAIQ 677

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
           +  +     + +     +     E +   I   +     +  +  + ++ GY  E+    
Sbjct: 678 DISERVAMLQSLRDSEQRFRQTAELSGQLIYDYDVTSGAIFWSGRIKEITGYSAEEFNSH 737

Query: 496 PFTVF---LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
            FT +   +  +  +     +   ++   R            ++    +      L    
Sbjct: 738 GFTGWVDCIHPDDRATTLGLIE--IARRDRSLYSATYRFRKADQTYYQVYEEGAYLYDEQ 795

Query: 553 C----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
                   T+ D++  K  +  L  ++       S  +D +
Sbjct: 796 GAAVRMLGTLKDVTAQKAAEEALRRSEARLAHAFSATTDAI 836



 Score = 78.1 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 21/161 (13%), Positives = 50/161 (31%), Gaps = 2/161 (1%)

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490
             +    +  R   +K+     +   +L++    +  I+R+G ++S N+   + F     
Sbjct: 168 AEMGRLALQERQTAQKLHKSEQRYQHLLDSFPVVVYEIDRDGRVVSANKTALRHFNRTAA 227

Query: 491 DI-LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
           ++     F           +   L  +      +  E   +G         +      + 
Sbjct: 228 ELDQGIDFFSLAPPQLHPKIKQRLQLMFKGQQLEPTEYPLIGKDGARGAALVYSQPISVD 287

Query: 550 FS-SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
                      DISE K  + +L  +++         SD +
Sbjct: 288 DEVVGVRSVYIDISERKAIEERLLSSEQRYRALFESASDAI 328


>gi|118594848|ref|ZP_01552195.1| hypothetical protein MB2181_04230 [Methylophilales bacterium
           HTCC2181]
 gi|118440626|gb|EAV47253.1| hypothetical protein MB2181_04230 [Methylophilales bacterium
           HTCC2181]
          Length = 875

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 94/366 (25%), Positives = 161/366 (43%), Gaps = 25/366 (6%)

Query: 450 EVMQLCSILEATSDGI-AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
           E   L  IL  +   +  +   +  I   N    ++F    +D+  +  T          
Sbjct: 19  EEDTLE-ILRHSPVAVRMMRVSDRHITFANPRYMEMFKVEEKDL--QTLTPLQVYQNKED 75

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP--FSSCYSLTMHDISEWKQ 566
                  +        ++++    T   +LL +      +     S      +DI+   Q
Sbjct: 76  FESL--SVRINAQENIVDEVLAMKTLTGELLQVMGSFHHMKYLDQSMVVAWFYDITAAHQ 133

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
                   K++AE  +  KS+FLA +SHEIRTP+  IIG S +          +PR  +Y
Sbjct: 134 A-------KQLAEDAAKMKSEFLANMSHEIRTPMNGIIGMSHLALKTDL----DPRQRDY 182

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
              I ++G  +L I+ND+LD SKIE+GK+++      +DE +S   +++    +EK + +
Sbjct: 183 VKKIQQAGKHLLGIINDILDFSKIEAGKLSIEEITFDIDEMMSNIANMIGQKCSEKNLEL 242

Query: 687 RTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRV 741
              F  ++P  ++ D   + QI +N  +NAI FT  G ++IIS      ++    +   V
Sbjct: 243 IFHFPQDLPHKLIGDPLRLSQILINYGNNAIKFTEKG-EVIISAEILERDDEGIFIKFNV 301

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            DTG+G+T  +  K  + F Q   S   +  GTGLGL +AK +     G+  + S   KG
Sbjct: 302 SDTGIGLTKEQKSKLFQSFQQADTSTSRKFGGTGLGLAIAKQLAGLMGGEVGVESEYGKG 361

Query: 802 TLIEII 807
           +     
Sbjct: 362 STFWFT 367


>gi|309790318|ref|ZP_07684885.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides
           DG6]
 gi|308227652|gb|EFO81313.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides
           DG6]
          Length = 987

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 121/622 (19%), Positives = 229/622 (36%), Gaps = 43/622 (6%)

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV-LKTEKYPLLTSE 265
           +  +      V    +D+ ++Q  P    +++    +     H      +     L    
Sbjct: 108 IAIVNPAGEVVHARAFDLVNEQEIPFPPELQDFTGPMAVLLQHTGTAESERSGLVLFADG 167

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
              L  +    + N    T     G   +       +   R    +        +  P+ 
Sbjct: 168 PWLLAARPILTSQNEGPATGTFIMGRRLD------AHEVERLSAVMRLPLVITRSDDPDL 221

Query: 326 VDKCPIPFFVYSHGNLFYANPSFL-LLTKYKSVDDI-EIAGGLSTLLDAPKLSDNNAIKP 383
                      + G      P     ++   ++ D+    G L +L    ++S       
Sbjct: 222 SAVLQQALVQINAGKAVVITPLDPQRISGITTLRDLWGQPGVLLSLDLPREVSLLGRQAT 281

Query: 384 VMLYRSD-------------RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
                +                     AR+ ++        A         +   E    
Sbjct: 282 GQYTLALLIVGLVFGALIFAMLERTVLARIISLSGQVGMIEANQVGSQVTLSGDDEIGHL 341

Query: 431 NGIEPEDVDTRI-NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
                + +      +R++     +   ++E T D I + + +  I   N A  ++ G  V
Sbjct: 342 ATTINQMLARLAHAQRRITENERRYRQLIELTPDAIIVHDGQ-QIRYINSAGHQVLGNEV 400

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK-- 547
                              ++  L  ++       + K    +  +  ++   ++     
Sbjct: 401 H--------------VGQALDPTLAAVVPQADGTPILKEQRITRADGSVIEAELLALAFV 446

Query: 548 LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
              +    L + +I+E K+ +  L  AK+ A+  +  KS FLA +SHE+RTPLT+IIG++
Sbjct: 447 DEDTPATELIVRNITERKEVERTLREAKEAADSANRAKSQFLATMSHELRTPLTSIIGYA 506

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
           E + N+   P+ N   +     I  +G  +L I+ND+LD+SKIE+G M +H  PV LD+ 
Sbjct: 507 E-LLNRALTPIANDEVMHDLRRIQVAGAHLLAIINDVLDLSKIEAGHMQVHPAPVRLDKL 565

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727
           V   +  VQ         +     ++   ++ D   V+QI LN+LSNA  FT + GQI +
Sbjct: 566 VQAVVDTVQPVIVRNTNQLLVQGLDDAGLMVTDEVHVRQILLNLLSNAGKFT-TNGQITL 624

Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
             + T    V   V DTG+G+   + ++  + F Q+  S   +  GTGLGL L++ +   
Sbjct: 625 RISGTPE-MVYFAVHDTGIGIHPEQAKQLFRDFVQVDASTTRKYGGTGLGLALSRRLARL 683

Query: 788 NMGKFYIFSTPAKGTLIEIIFP 809
             G   + S   +G+   +  P
Sbjct: 684 LGGDITLESALGEGSTFTLSLP 705


>gi|254413786|ref|ZP_05027555.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196179383|gb|EDX74378.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 1038

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 105/411 (25%), Positives = 186/411 (45%), Gaps = 36/411 (8%)

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
                  + + Q  +           + ++       SI E   +GI     +G  +S N
Sbjct: 199 ALEALGRQVIAQIELRLNVDKLERQMQALQKAENNYRSIFENAVEGIYQTTPDGHYISAN 258

Query: 479 RAVSKLFGYPVEDILRKPFTVFLE--QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
            A+++++GY     L    T   +     PS    ++  +                 ++ 
Sbjct: 259 PALARIYGYNSPAELIASVTDIGQQLYVDPSKRAEFINRMQQQGAVS--HFEVQVYRRDR 316

Query: 537 KLLSLRIIIKKLPFSSCYS----LTMHDISEWKQEKNKLSHAKKI-------AEKESSHK 585
            L+ +    + +   +        ++ DI++ KQ +  L    +        AEK +  K
Sbjct: 317 SLIWIMENARAVRDRNGTLLYYEGSVEDITQQKQAQTALEQQNRALKDARQVAEKANKAK 376

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
           S+FLA +SHEIRTP+  +IG + ++ +    P        +A  I  SG+ +L I+ND+L
Sbjct: 377 SEFLAMMSHEIRTPMNGVIGMTGLLLDTELTP----DQRHFAETIRNSGDALLTIINDIL 432

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSV 704
           D SKIESGK++L  +P  L + V +A+ L+   A  K++ +   F ++IP ++  D+  V
Sbjct: 433 DFSKIESGKLDLEEQPFELRDCVEDALDLLAAKAAAKKLELGYRFDSHIPDQVRGDVTRV 492

Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNE------------EVILRVRDTGVGMTNYE 752
           +QI +N+LSNA+ FT +G +I++S T    E             +   V DTG+G+    
Sbjct: 493 RQILVNLLSNAVKFTEAG-EIVVSVTGRKLENEADSHPDSNRYHIQFAVNDTGIGIAPQR 551

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           + +  KPF Q+ +S   +  GTGLGL + K +     G  ++ S    GT+
Sbjct: 552 MHRLFKPFSQVDSSTSRQYGGTGLGLAICKQLSAMMGGTMWVES---HGTV 599



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/173 (12%), Positives = 51/173 (29%), Gaps = 11/173 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP--NNHIGDLLKRQNTW 143
            +     G+    +  L +  G  +   +   + D+   L++DP       + +++Q   
Sbjct: 245 IYQTTPDGHYISANPALARIYGYNSPAELIASVTDIGQQLYVDPSKRAEFINRMQQQGAV 304

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                       +L + I   A  +  RN     + G             +     L+++
Sbjct: 305 SHFEVQVYRRDRSL-IWIMENARAVRDRNGTLLYYEG-----SVEDITQQKQAQTALEQQ 358

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDV 253
              L + ++      K K +  +  S     P   +      L +     D  
Sbjct: 359 NRALKDARQVAEKANKAKSEFLAMMSHEIRTPMNGVIGMTGLLLDTELTPDQR 411



 Score = 57.7 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 20/263 (7%), Positives = 67/263 (25%), Gaps = 21/263 (7%)

Query: 234 LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293
             + ++  +       + ++      PL+T +  +L        +      ++       
Sbjct: 144 NALDDERFAQNPLVTSEPNIRFYAGTPLVTPDGFALGTLCVIDQVPRQLTPEQIEALEAL 203

Query: 294 NNSKESFEYLSHRNH--PSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLL 350
                +   L               + EN      +      +     G+   ANP+   
Sbjct: 204 GRQVIAQIELRLNVDKLERQMQALQKAENNYRSIFENAVEGIYQTTPDGHYISANPALAR 263

Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
           +  Y S  ++     ++ +     +  +   + +   +              +     + 
Sbjct: 264 IYGYNSPAEL--IASVTDIGQQLYVDPSKRAEFINRMQQQGAVSHFEV---QVYRRDRSL 318

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470
           + +        ++    +   G   +    +  +  +E +   L              + 
Sbjct: 319 IWIMENARAVRDRNGTLLYYEGSVEDITQQKQAQTALEQQNRALK-------------DA 365

Query: 471 EGIILSTNRAVSKLFGYPVEDIL 493
             +    N+A S+       +I 
Sbjct: 366 RQVAEKANKAKSEFLAMMSHEIR 388


>gi|126650115|ref|ZP_01722348.1| two-component sensor histidine kinase [Bacillus sp. B14905]
 gi|126593287|gb|EAZ87249.1| two-component sensor histidine kinase [Bacillus sp. B14905]
          Length = 591

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 81/363 (22%), Positives = 147/363 (40%), Gaps = 29/363 (7%)

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
            E  QL +IL + +D +   NR+  IL +N    +L      +   +       +  P  
Sbjct: 254 QENEQLSNILTSMTDAVITFNRDRTILLSNPPAERLMQKWFVNKGSQS-----AKPIPPE 308

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISEWKQE 567
           + H L  +L  + +   E        +    +  I       +       + D++E  + 
Sbjct: 309 LYHMLDHVLMFEDKLEEEIEM-----DGNYYTFTISPLYSGENIRGAVAVIRDMTEQHRL 363

Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
           +                +SDF+A VSHE+RTP+  + G+SE + +  F      R  E  
Sbjct: 364 E--------------KLRSDFIANVSHELRTPIAMLQGYSEALMDDDFIQDLEER-NEIT 408

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
             I      +  +V DLLD++++ESG M L+ + + ++             A EK I + 
Sbjct: 409 KIIYDESKRMGRLVTDLLDLARMESGHMTLYKDELPINSTFERITQKFAQVAKEKHIRLL 468

Query: 688 TSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
                N+   I  D   ++Q+  N++ NA+  T  G  + +           + V+DTG 
Sbjct: 469 FDSEFNDDAMINIDEDRIEQVLTNLVDNALRHTEEGS-VTVKVEQEPT-FAKISVQDTGH 526

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+   +L    + F +   ++     GTGLGL +A+ ++ A+ G   + S   +GT    
Sbjct: 527 GIPQDDLPYVFERFYKADKARTRSKGGTGLGLAIARNIIKAHSGNIMVDSVLKEGTTFTF 586

Query: 807 IFP 809
             P
Sbjct: 587 YLP 589


>gi|221141404|ref|ZP_03565897.1| sensor kinase protein [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|257424215|ref|ZP_05600644.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257426892|ref|ZP_05603294.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257429528|ref|ZP_05605915.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257432175|ref|ZP_05608538.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257435136|ref|ZP_05611187.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           M876]
 gi|282912933|ref|ZP_06320725.1| sensory box histidine kinase VicK [Staphylococcus aureus subsp.
           aureus M899]
 gi|282922561|ref|ZP_06330251.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           C101]
 gi|293497986|ref|ZP_06665840.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           58-424]
 gi|293511576|ref|ZP_06670270.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           M809]
 gi|293550185|ref|ZP_06672857.1| sensory box histidine kinase VicK [Staphylococcus aureus subsp.
           aureus M1015]
 gi|257273233|gb|EEV05335.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257276523|gb|EEV07974.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257280009|gb|EEV10596.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257283054|gb|EEV13186.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257285732|gb|EEV15848.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           M876]
 gi|269939545|emb|CBI47903.1| transcriptional regulatory protein WalK [Staphylococcus aureus
           subsp. aureus TW20]
 gi|282314782|gb|EFB45168.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           C101]
 gi|282323033|gb|EFB53352.1| sensory box histidine kinase VicK [Staphylococcus aureus subsp.
           aureus M899]
 gi|290919232|gb|EFD96308.1| sensory box histidine kinase VicK [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291096917|gb|EFE27175.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           58-424]
 gi|291465534|gb|EFF08066.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           M809]
 gi|329312743|gb|AEB87156.1| Sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           T0131]
          Length = 608

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 79/388 (20%), Positives = 171/388 (44%), Gaps = 29/388 (7%)

Query: 426 ENMPQNGIEPEDVDTRINKRKM--EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           + + +  +   ++  R+ + +   E E  +L S++   SDGI   +R G I   N    K
Sbjct: 235 DEIGELALAFNNLSKRVQEAQANTESEKRRLDSVITHMSDGIIATDRRGRIRIVNDMALK 294

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           + G   EDI+       L       +        S  L    E+  +        ++   
Sbjct: 295 MLGMAKEDIIGYYMLSVLSLEDEFKLEEIQENNDSFLLDLNEEEGLIAR------VNFST 348

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
           I+++  F + Y   +HD++E +Q + +              + +F+A VSHE+RTPLT++
Sbjct: 349 IVQETGFVTGYIAVLHDVTEQQQVERE--------------RREFVANVSHELRTPLTSM 394

Query: 604 IGFSEVIKNQRFGPLGNPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
             + E ++    G   +     ++ +        ++ +VNDLL +SK+++    ++ E +
Sbjct: 395 NSYIEALEE---GAWKDEELAPQFLSVTREETERMIRLVNDLLQLSKMDNESDQINKEII 451

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
             +  +++ I+  +   + K                 D   + Q+  N+++NA+ ++   
Sbjct: 452 DFNMFINKIIN--RHEMSTKDTTFIRDIPKKTIFTEFDPDKMTQVFDNVITNAMKYSRGD 509

Query: 723 GQIIISTTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
            ++            + +R++D G+G+   +++K    F ++  ++  +  GTGLGL ++
Sbjct: 510 KRVEFHVKQNPLYNRMTIRIKDNGIGIPINKVDKIFDRFYRVDKARTRKMGGTGLGLAIS 569

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           K +V+A+ G+ +  S   +GT I I  P
Sbjct: 570 KEIVEAHNGRIWANSVEGQGTSIFITLP 597


>gi|313632600|gb|EFR99590.1| sensor histidine kinase ResE [Listeria seeligeri FSL N1-067]
          Length = 596

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 78/377 (20%), Positives = 156/377 (41%), Gaps = 42/377 (11%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
             +  E  QL +IL   +DG+   + +  I+ +N    +                F    
Sbjct: 249 SALRQEKEQLSNILVGMADGVIKFSIDKTIILSNPPAEEFLH-----------NWFFSPE 297

Query: 505 TPS------VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM 558
                     +++ L + L     Q  E        +   +++  ++            +
Sbjct: 298 NAEKVLIPVALDNLLNDTLEAKESQVGEITF----ADRTYVAILTLLYTGEHVRSIVAVI 353

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            D++E KQ +                KSDF+  VSHE+RTP++ + G+SE I +      
Sbjct: 354 RDMTEEKQLE--------------KMKSDFVNNVSHELRTPISMLQGYSEAIIDGV--AQ 397

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
            +    E+A  I      +  +VND+LD++++E+G   +  + + L   + + ++   + 
Sbjct: 398 SDEEVREFAQIIYDESLRIGRLVNDMLDLARMEAGFNQMDNQKLPLAPLLEKVMANFDVL 457

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP----SGGQIIISTTHTSN 734
           A E  + +             D   ++Q+ +N++ NAI  T      G  ++  T   +N
Sbjct: 458 AKENFVELGLELETPNLEYSYDPDRLEQVLINLIMNAIRHTGKEGYKGKVVLKQTIDETN 517

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGEGTGLGLPLAKAMVDANMGKFY 793
            ++I+ V D G G+   ++    + F +   +++  +  GTG+GL + K +V+A+ GK  
Sbjct: 518 NKLIITVSDNGSGIAEEDIPYLFERFYKADKARKRGKAVGTGIGLAIVKNIVEAHDGKIS 577

Query: 794 IFSTPAKGTLIEIIFPL 810
           + S   KG+   I  PL
Sbjct: 578 VKSELGKGSDFIITLPL 594


>gi|308179222|ref|YP_003923350.1| histidine protein kinase; sensor protein [Lactobacillus plantarum
           subsp. plantarum ST-III]
 gi|308044713|gb|ADN97256.1| histidine protein kinase; sensor protein [Lactobacillus plantarum
           subsp. plantarum ST-III]
          Length = 624

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 82/410 (20%), Positives = 165/410 (40%), Gaps = 34/410 (8%)

Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465
             + +  +     ++  Q  + +    I  E+          E E  +L S+L   SDG+
Sbjct: 227 RGDYAGQVRVYSDDELGQLAKAINNLSIRVEESQEST-----EAERRRLDSVLSHMSDGV 281

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR-QT 524
              +R G I   N   S       E  +       L+      +   +     L L   +
Sbjct: 282 IATDRRGNITIINETASDFMDVTAEKAIGNSILDILKIRDDYSLRDLIENQDELMLDFSS 341

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
            E+  + +          +I ++  F S     +HD++E ++  N               
Sbjct: 342 NERDLILNA------YFSLIQRESGFISGLVCVLHDVTEQQKIDND-------------- 381

Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
           +  F++ VSHE+RTPLT++  + E + +  +          +        + ++ ++N+L
Sbjct: 382 RKQFVSNVSHELRTPLTSLRSYIEALSDGAW--KDPEVAPGFLKVTQEETDRMIRMINEL 439

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE-----KRILIRTSFANNIPRILA 699
           L +S+++SG   +  E V+++E  +  +    +   +     K   I+  F      +  
Sbjct: 440 LSLSRMDSGTTRVDMELVNINEMFNYVLDRFDMILKKDDNPAKYYTIKREFTKRDLWVEI 499

Query: 700 DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKP 759
           D     Q+  NI++NAI ++P GG +       ++  VI+ + D G+G+   +L      
Sbjct: 500 DTDKFTQVLDNIMNNAIKYSPDGGVVTCRL-LETHNRVIISISDQGLGIPRADLGHVFDR 558

Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           F ++  ++     GTGLGL ++K +V    G+ ++ S   KG+   I  P
Sbjct: 559 FFRVDKARSRAQGGTGLGLAISKEVVQMLGGRIWVDSVEGKGSTFYISLP 608


>gi|239993130|ref|ZP_04713654.1| PAS sensor signal transduction histidine kinase [Alteromonas
           macleodii ATCC 27126]
          Length = 943

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 101/557 (18%), Positives = 212/557 (38%), Gaps = 34/557 (6%)

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
            E   P  +D   IN    T          N       ++          F++   L   
Sbjct: 262 RERFTPLPDDIDVINALSKTAAIIIERNNENRARR---VAESALLENIESFNKQRRLYET 318

Query: 325 TVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
            +   P   +++   G+  YAN + L +      + I        L   P  +D +  + 
Sbjct: 319 ALSNTPDLLYIFDLEGHFTYANDALLQMWGLSWDEAIGKT--CLELGYEPWHADMHMQE- 375

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
             + +   T     + +     +        F+P    +   E +   G   +  + +  
Sbjct: 376 --IRQVIETKQPIRSDVPFTGTHGRRIYDYIFVPVIGEDGNVEAI--AGSTRDVTERKHA 431

Query: 444 KRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILR----KPFT 498
           +   +    +    LEA+   GI   + +  + + +  + +LF    ++       +   
Sbjct: 432 EEMAKRAESRRRLALEASHSFGIWDWDIKQNLFTADERLGELFNLSSDEAENGVAIEVPK 491

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR----IIIKKLPFSSCY 554
            ++  +  +     + E ++       ++      K+  +        +I         +
Sbjct: 492 QYIHPDDLAACEAAICESINNRT--LFDEEYRILQKDGTVRWASFRGRVIYNSSGEPERF 549

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                D +  +   + L       ++    K +FLA ++HE+R PL  I    E++++  
Sbjct: 550 PGVGVDTTRERNAIDAL-------QEADRRKDEFLATLAHELRNPLAPIRNALEILQSDD 602

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
           +      +  E    ++R    ++ +V+DL+D+S+I  GK+ +H +PV+L E +  AI  
Sbjct: 603 Y---SQNQKSEAFGRVERQVTQMIRLVDDLMDVSRITRGKIRIHRKPVNLCEILDTAIET 659

Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
           +Q   +EK+  +          +  DL  + QI  NI++NA  +TP GG I +  + T +
Sbjct: 660 IQPLIDEKQHTLLVEKVAEPVWVNGDLIRLSQIFSNIINNAAKYTPPGGNIEVCIS-TCD 718

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
            +V + V+D G G+   +L+     F Q+  + +    G G+GL L K + + + G   +
Sbjct: 719 GKVTIAVKDNGEGIPAGKLKSVFDMFTQVDGALERSQGGLGIGLTLVKKLTELHDGTVNV 778

Query: 795 FS-TPAKGTLIEIIFPL 810
            S    KGT   +  P+
Sbjct: 779 QSDGVDKGTTFIVTLPV 795



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 27/255 (10%), Positives = 62/255 (24%), Gaps = 20/255 (7%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH--IDPNNHIGDLLKRQNTWYGKT 147
           D  G+    ++ L +  G    + IG    ++             I  +++ +       
Sbjct: 331 DLEGHFTYANDALLQMWGLSWDEAIGKTCLELGYEPWHADMHMQEIRQVIETKQPIRSDV 390

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
              P  GT+     D   +P+   +       G               + KR + +    
Sbjct: 391 ---PFTGTHGRRIYDYIFVPVIGEDGNVEAIAG--STRDVTERKHAEEMAKRAESRRRLA 445

Query: 208 HEIKKGHSSVEKE-------KYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
            E        + +         +   +         +N V+          D L   +  
Sbjct: 446 LEASHSFGIWDWDIKQNLFTADERLGELFNLSSDEAENGVAIEVPKQYIHPDDLAACEAA 505

Query: 261 LLTS--EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA----Y 314
           +  S    +   E+      +            + N+S E   +       +        
Sbjct: 506 ICESINNRTLFDEEYRILQKDGTVRWASFRGRVIYNSSGEPERFPGVGVDTTRERNAIDA 565

Query: 315 FDEGENLTPETVDKC 329
             E +    E +   
Sbjct: 566 LQEADRRKDEFLATL 580



 Score = 54.6 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 14/128 (10%), Positives = 37/128 (28%), Gaps = 6/128 (4%)

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
             +++E  +D +   + +G ++  N     + G    D+          Q+    +    
Sbjct: 18  FQALIENITDAVIFADIKGNVIYANHQARSICGLDKSDLFDCSVFSLFPQSQVPNITQQF 77

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH 573
              +  +  +T E        +     L I       +     + HD S  ++ +     
Sbjct: 78  ELAVKQEPGKTTEIRF---GIDHAWFKLTIFPV---AAGVVGFSFHDFSMKRRLQIISQS 131

Query: 574 AKKIAEKE 581
            +      
Sbjct: 132 QRDAMRLA 139


>gi|322376760|ref|ZP_08051253.1| sensory box histidine kinase VicK [Streptococcus sp. M334]
 gi|321282567|gb|EFX59574.1| sensory box histidine kinase VicK [Streptococcus sp. M334]
          Length = 449

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 91/376 (24%), Positives = 168/376 (44%), Gaps = 33/376 (8%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           R+ +  +E E  +L SIL   +DG+   NR G I   N    K  G   E++L K     
Sbjct: 83  RLTQENLEQESKRLHSILSYMTDGVLATNRRGKITMINDMAKKQLGVQKEEVLNKSILEL 142

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SL 556
           L+      +   +T+I         E +        + LSLR+    +   S +      
Sbjct: 143 LKIADEYELRDLITQIP--------ELMIDSQDANGEYLSLRVRFALVRRESGFISGLVA 194

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            +HD +E ++E+ +                 F++ VSHE+RTPLT++  + E +     G
Sbjct: 195 VLHDTTEQEKEERERRL--------------FVSNVSHELRTPLTSVKSYLEAL---DEG 237

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV- 675
            L  P   ++        N ++ +V DLL +S+I++   +L  E ++    ++  ++   
Sbjct: 238 ALSEPVAPDFIKVSLDETNRMMRMVTDLLHLSRIDNATSHLDVELINFTAFITFILNRFD 297

Query: 676 --QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
             +    EK+  +   +      I  D   + Q+  NIL+NAI ++P GG+I ++   T 
Sbjct: 298 QIRGQDEEKKYELVRDYPITSVWIEIDTDKMTQVIDNILNNAIKYSPDGGKITVTMKTTD 357

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
           ++ + L + D G+G+   +L +    F ++  ++     GTGLGL +AK ++  + G  +
Sbjct: 358 DQMI-LSISDQGLGIPKQDLPRIFDRFYRVDRARSRAQGGTGLGLAIAKEIIKQHKGFIW 416

Query: 794 IFSTPAKGTLIEIIFP 809
             S   KG+   I+ P
Sbjct: 417 AKSEYGKGSTFTIVLP 432


>gi|47568664|ref|ZP_00239361.1| histidin [Bacillus cereus G9241]
 gi|47554652|gb|EAL13006.1| histidin [Bacillus cereus G9241]
          Length = 613

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 84/372 (22%), Positives = 158/372 (42%), Gaps = 25/372 (6%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +  +   E E  +L S+L   +DG+   +R+G I+  N    K+     E  L +     
Sbjct: 258 QQARSSTESERRKLSSVLSHMTDGVIATDRKGDIILLNDPAEKMLNVSRETALDQSVLEV 317

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
           L       ++H   E  S+ L  +                  +I K+   ++     ++D
Sbjct: 318 LGIQEEFTLDHLYEEPDSVLLDFSTRNEPYILRAS-----FSVIQKETGKANGLIAVLYD 372

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           ++                E+    + +F+A VSHE+RTPLT +  + E + +  +     
Sbjct: 373 VT--------------EQERIERERREFVANVSHELRTPLTTMRSYLEALTDGAWQDPNI 418

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
                +          ++ +VN LL +SK++S +  L  E V   +  +  I   +  + 
Sbjct: 419 APQ--FLTVTQEETERMIRLVNALLQLSKLDSTEHRLMKEWVDFTDFFNNIIDRFE-MSK 475

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV-IL 739
           E+ +  + SF+     I  D   + Q+  NI+SNA+ ++P GG +          E+  +
Sbjct: 476 EQNVSFKRSFSKKSRFIDMDTDKITQVLYNIISNALKYSPEGGTVT--YRLRDRGELLEI 533

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V D G+G+    ++K  + F ++  ++  +  GTGLGL +AK M++A+ G  +  S   
Sbjct: 534 SVSDQGMGIPKENVDKIFERFYRVDKARSRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEG 593

Query: 800 KGTLIEIIFPLY 811
           KGT I    P+ 
Sbjct: 594 KGTTIYFTLPMA 605


>gi|284008705|emb|CBA75378.1| two-component system, OmpR family, aerobic respiration control
           sensor histidine kinase ArcB [Arsenophonus nasoniae]
          Length = 779

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 85/373 (22%), Positives = 167/373 (44%), Gaps = 18/373 (4%)

Query: 441 RINKRKMEIEVM--QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
           R  + ++E E     L S L+A+ D +   +        NRA+  L G   + ++   + 
Sbjct: 144 RREQTQLEFEQQSILLQSFLDASPDLVYYRDENNDFSCCNRAMELLTGRSEKQLIGLTYR 203

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII--KKLPFSSCYSL 556
               +           ++   ++  T E+  +     +    +R +    ++        
Sbjct: 204 EIYGEEVAEKELETDEKVFRHNVSLTYEQWLVYPDGRKACFEIRKVPFYDRVGKRHGLVG 263

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
              DI+E K       H ++  E  S  K+ F++ +SHE+RTPL  I+G S ++ +    
Sbjct: 264 FGRDITERK-------HYQEALENASRDKTTFISTISHELRTPLNGIVGLSRILLDTELT 316

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
                    Y   I  S   + +I ND++++ KIE  K++L  + +  +E +S+  +L +
Sbjct: 317 N----EQTNYLKTIHVSAITLGNIFNDIIEMDKIERRKVSLDSQQIDFNEFISDIENLSR 372

Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
           L    K +        N+P +I+ D   ++QI  N++ NA+ FT  G +I +   +  +E
Sbjct: 373 LLVQPKDLKFILEVKENLPSKIITDATRLRQILWNLIGNAVRFTQQG-EIKVRIWYEGHE 431

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE-GTGLGLPLAKAMVDANMGKFYI 794
           ++ ++V D+G+G+   E +K    + Q+  S   R E GTG+GL ++K +  +  G   +
Sbjct: 432 QLFIQVIDSGIGIPKEEQKKIFAMYYQVKGSAGGRPETGTGIGLAVSKRLAQSMGGDIQV 491

Query: 795 FSTPAKGTLIEII 807
            ST   G+   + 
Sbjct: 492 ASTLGVGSCFTVS 504



 Score = 42.7 bits (99), Expect = 0.24,   Method: Composition-based stats.
 Identities = 15/134 (11%), Positives = 38/134 (28%), Gaps = 5/134 (3%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN-TW 143
             +  D +      +  +    G    ++IG+   ++      +      + + R N + 
Sbjct: 169 LVYYRDENNDFSCCNRAMELLTGRSEKQLIGLTYREIYGEEVAEKELETDEKVFRHNVSL 228

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +  L   +G       ++  +P Y R  +  G  GFG           +   +   + 
Sbjct: 229 TYEQWLVYPDGRKACF--EIRKVPFYDRVGKRHGLVGFG--RDITERKHYQEALENASRD 284

Query: 204 FSHLHEIKKGHSSV 217
            +            
Sbjct: 285 KTTFISTISHELRT 298


>gi|171060040|ref|YP_001792389.1| PAS/PAC sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
 gi|170777485|gb|ACB35624.1| PAS/PAC sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
          Length = 762

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 93/395 (23%), Positives = 162/395 (41%), Gaps = 38/395 (9%)

Query: 444 KRKMEIEVMQLCSILEATSDGIA----IINREGIILSTNRAVSKLFGYPVEDIL--RKPF 497
           + ++     QL SI +   DG      + + +      +  V K+ G     +    +P 
Sbjct: 221 ESRLRDSEAQLRSIGDNLPDGFVYQFEMGDGKRAFSYISAGVEKMLGLSPAALRVDAQPL 280

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---Y 554
              +  ++ +       E   L        + L +  + + + L +    +   +    +
Sbjct: 281 FALMAPDSRAQYLQ--DEARCLRELTEYAGVLLFNPSDGRKVWLHVRSGPIRRLNGETVW 338

Query: 555 SLTMHDISEWKQEKNKLSHAKK------------------IAEKESSHKSDFLARVSHEI 596
                DI++ K  + +L   +                    AE  +  K  FLA +SHEI
Sbjct: 339 VGVAVDITKLKLAEAELERHRNHLEAMVEERTAALSDAKLAAEAANLAKGSFLANMSHEI 398

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTP+ AIIG S ++  +   P    +       I+ SG  +L I+ND+LD+SKIE+GK +
Sbjct: 399 RTPMNAIIGLSALLLRKPQEPDTADK----LGLIEASGKHLLGIINDILDLSKIEAGKFH 454

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716
           L  E + +        S+V   A+ K I ++T      PR+L DL  + Q  LN++SNAI
Sbjct: 455 LSQERLDVRVLPVNVCSMVAEAAHAKGIKLKTELDFLPPRLLGDLTRITQALLNLVSNAI 514

Query: 717 HFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
            FT +G  + +       ++    +   V DTG+G++   + +   PF Q   S      
Sbjct: 515 KFTRTGS-VTVRAVREEEDQDSILLRFEVIDTGIGISAQAMSRLFSPFEQADASTVRNFG 573

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           GTGLGL + + +     G     S   +G+     
Sbjct: 574 GTGLGLVITRRLAQLMGGDAGAASVLGEGSTFWFT 608



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 51/400 (12%), Positives = 105/400 (26%), Gaps = 35/400 (8%)

Query: 61  SVSNTNYLDSENTFVFDPIPRTVRFTWNI---DAHGYLKEISEELPKTIGNYAFKMIGMR 117
           ++S +   DSE             F +     D       IS  + K +G     +    
Sbjct: 218 AISESRLRDSEAQLRSIGDNLPDGFVYQFEMGDGKRAFSYISAGVEKMLGLSPAALR--- 274

Query: 118 LCDVSDILHIDPNNHIGDLLKRQN-------TWYGKTTLWPIEGTNLYVPIDLAALPIYS 170
             D   +  +   +     L+ +         + G     P +G    V + + + PI  
Sbjct: 275 -VDAQPLFALMAPDSRAQYLQDEARCLRELTEYAGVLLFNPSDGR--KVWLHVRSGPIRR 331

Query: 171 RNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP 230
            N E       G+           A  +R       + E +    S  K   +  +    
Sbjct: 332 LNGE---TVWVGVAVDITKLKLAEAELERHRNHLEAMVEERTAALSDAKLAAEAANLAKG 388

Query: 231 PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTIN-----LNQYTK 285
                M +++ +          +L  +     T+++  L E    H +      L+    
Sbjct: 389 SFLANMSHEIRTPMNAIIGLSALLLRKPQEPDTADKLGLIEASGKHLLGIINDILDLSKI 448

Query: 286 KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYA- 344
           +     L     +      +       A   +G  L  E +D  P P  +     +  A 
Sbjct: 449 EAGKFHLSQERLDVRVLPVNVCSMVAEAAHAKGIKLKTE-LDFLP-PRLLGDLTRITQAL 506

Query: 345 -----NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS-A 398
                N      T   +V  +       ++L   ++ D      +      R       A
Sbjct: 507 LNLVSNAIKFTRTGSVTVRAVREEEDQDSILLRFEVIDTGIG--ISAQAMSRLFSPFEQA 564

Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
              T++      L +            +    + +     
Sbjct: 565 DASTVRNFGGTGLGLVITRRLAQLMGGDAGAASVLGEGST 604



 Score = 46.9 bits (110), Expect = 0.015,   Method: Composition-based stats.
 Identities = 15/154 (9%), Positives = 37/154 (24%), Gaps = 11/154 (7%)

Query: 311 LSAYFDEGENLTPETVDKCPIPF-----FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365
             +   + E       D  P  F              Y +     +           A  
Sbjct: 220 SESRLRDSEAQLRSIGDNLPDGFVYQFEMGDGKRAFSYISAGVEKMLGLSPAALRVDAQP 279

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
           L  L+     +     +   L          +  L     +    + +            
Sbjct: 280 LFALMAPDSRAQYLQDEARCLR----ELTEYAGVLLFNPSDGRK-VWLHVRSGPIRRLNG 334

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459
           E +   G+  +    ++ + ++E     L +++E
Sbjct: 335 ETV-WVGVAVDITKLKLAEAELERHRNHLEAMVE 367


>gi|49481209|ref|YP_039455.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|196036107|ref|ZP_03103507.1| sensory box histidine kinase YycG [Bacillus cereus W]
 gi|218906657|ref|YP_002454491.1| sensory box histidine kinase YycG [Bacillus cereus AH820]
 gi|49332765|gb|AAT63411.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|195991274|gb|EDX55242.1| sensory box histidine kinase YycG [Bacillus cereus W]
 gi|218538378|gb|ACK90776.1| sensory box histidine kinase YycG [Bacillus cereus AH820]
          Length = 613

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 84/372 (22%), Positives = 158/372 (42%), Gaps = 25/372 (6%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +  +   E E  +L S+L   +DG+   +R+G I+  N    K+     E  L +     
Sbjct: 258 QQARSSTESERRKLSSVLSHMTDGVIATDRKGDIILLNDPAEKMLNVSRETALDQSVLEV 317

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
           L       ++H   E  S+ L  +                  +I K+   ++     ++D
Sbjct: 318 LGIQEEFTLDHLYEEPDSVLLDFSTRNEPYILRAS-----FSVIQKETGKANGLIAVLYD 372

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           ++                E+    + +F+A VSHE+RTPLT +  + E + +  +     
Sbjct: 373 VT--------------EQERIERERREFVANVSHELRTPLTTMRSYLEALTDGAWQDPNI 418

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
                +          ++ +VN LL +SK++S +  L  E V   +  +  I   +  + 
Sbjct: 419 APQ--FLTVTQEETERMIRLVNALLQLSKLDSTEHRLMKEWVDFTDFFNNIIDRFE-MSK 475

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV-IL 739
           E+ +  + SF+     I  D   + Q+  NI+SNA+ ++P GG +          E+  +
Sbjct: 476 EQNVSFKRSFSKKSRFIDMDTDKITQVLYNIISNALKYSPEGGTVT--YRLRDRGELLEI 533

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V D G+G+    ++K  + F ++  ++  +  GTGLGL +AK M++A+ G  +  S   
Sbjct: 534 SVSDQGMGIPKENVDKIFERFYRVDKARSRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEG 593

Query: 800 KGTLIEIIFPLY 811
           KGT I    P+ 
Sbjct: 594 KGTTIYFTLPMA 605


>gi|330973917|gb|EGH73983.1| PAS protein [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 504

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 103/359 (28%), Positives = 179/359 (49%), Gaps = 17/359 (4%)

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
           GI  ++R G I + N    ++ GY  ++I+ + F+VF  Q            +    +  
Sbjct: 7   GIFALDRNGFITTWNAGAERIKGYTEQEIIGQHFSVFYLQQECPQHPDM--ALHEATVNG 64

Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNKLSHAKKIAE 579
              +      K+       ++I     S      +S    DIS+ +  +  L  A++ AE
Sbjct: 65  RYTEEGWRQRKDGSRFWASVVITAQYDSNDELRGFSKITRDISDRRVAEIALGTAREEAE 124

Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639
           + S  KS+FL+R+SHE+RTPL +I+GF++++                  +I R+G  +L 
Sbjct: 125 RASRAKSEFLSRMSHELRTPLNSILGFAQLL-----DMDSPASQRPQIGHILRAGQHLLK 179

Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR--TSFANNIPRI 697
           ++N++LDI++IE+G ++L  EPVSL   + EA+ LV   A +  I ++   +  + I  +
Sbjct: 180 LINEVLDIARIEAGHVSLILEPVSLSNVLEEALVLVSPMAADANIELKPLPNLPDEIG-V 238

Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757
           +AD + + Q+ LN+LSNAI +    GQ+ I     +  +V + V DTG G+    + +  
Sbjct: 239 VADRQRLIQVLLNLLSNAIKYNRPAGQVRIEIEQIAE-QVTISVVDTGYGIAPERIGQLF 297

Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           KPF ++        EGTGLGL L+K+M++   G   + +TP +G    +  PL     P
Sbjct: 298 KPFERLDA--NPSVEGTGLGLALSKSMLEMMHGTLSVQNTPDEGCRFILALPLVRVQPP 354



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/263 (8%), Positives = 72/263 (27%), Gaps = 28/263 (10%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID------PNNHIGDLLKR 139
            + +D +G++   +    +  G    ++IG        + ++       P+  + +    
Sbjct: 8   IFALDRNGFITTWNAGAERIKGYTEQEIIGQHFS----VFYLQQECPQHPDMALHEATVN 63

Query: 140 QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGF---------RGFGIVHVNRVD 190
              +  +      +G+  +  + + A   Y  N E  GF         R    + +    
Sbjct: 64  GR-YTEEGWRQRKDGSRFWASVVITAQ--YDSNDELRGFSKITRDISDRRVAEIALGTAR 120

Query: 191 NDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK 250
            +     +   +  S +    +   +       +    SP         +    ++    
Sbjct: 121 EEAERASRAKSEFLSRMSHELRTPLNSILGFAQLLDMDSPASQRPQIGHILRAGQHLLKL 180

Query: 251 DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310
            + +      L  +   +         ++L+   ++         +  + E     N P 
Sbjct: 181 INEV------LDIARIEAGHVSLILEPVSLSNVLEEALVLVSPMAADANIELKPLPNLPD 234

Query: 311 LSAYFDEGENLTPETVDKCPIPF 333
                 + + L    ++      
Sbjct: 235 EIGVVADRQRLIQVLLNLLSNAI 257


>gi|240141277|ref|YP_002965757.1| putative PAS sensor hybrid histidine kinase [Methylobacterium
           extorquens AM1]
 gi|240011254|gb|ACS42480.1| putative PAS sensor hybrid histidine kinase [Methylobacterium
           extorquens AM1]
          Length = 698

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 95/413 (23%), Positives = 180/413 (43%), Gaps = 20/413 (4%)

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
            +     +  A        + +  E +       E +  R+   ++     +   ++EAT
Sbjct: 7   AVSVMGLSIAAAMLALILVSLRRREPVVPESDMTEALQDRL--WQIAESEERYRVLVEAT 64

Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
           ++ +   + +G I   +   + L G    +++           +P V+    +E  +  +
Sbjct: 65  TEAVVQRDGQGRITFASAGFAALLGMKPLELIGSTL-------SPQVIERGASEQRADGV 117

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE 581
           R   E++            + + +        +     D++   +    L  AK  AE  
Sbjct: 118 RVVEERLVPVDGLPRWFSFIEMPVSGSVDGPNWLRAGQDVTARVEAARVLDEAKSRAEAA 177

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
           +  KS FLA VSHE+RTPL  I+G ++++ + R     +P    Y      SG  +L +V
Sbjct: 178 NVAKSRFLATVSHELRTPLNGILGMADLLLDTRL----DPEQRTYVEAFRTSGKALLGLV 233

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-AD 700
           + +LD S+IE+G+++L  EP  +   V   + L+   A +K + I    A+++  +   D
Sbjct: 234 DGILDFSRIEAGRLDLAAEPFDVAALVEGVVELLAPRAQDKGLEIALDIADDLAALRVGD 293

Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILRVRDTGVGMTNYELEKAM 757
              V+QI +N+  NAI FT +GG + +S   +   +   ++L V DTG G+    +    
Sbjct: 294 ADRVRQILVNLAGNAIKFTQTGG-VGVSLARSGEGQGEGLVLTVEDTGPGIPEERIPILF 352

Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           + F Q  +S     EGTGLGL + + +V+   G     ST  +G+   ++ PL
Sbjct: 353 EEFEQGDDSAS--HEGTGLGLAITRRLVERMNGTIEARSTVGRGSTFRVMLPL 403



 Score = 41.2 bits (95), Expect = 0.85,   Method: Composition-based stats.
 Identities = 21/234 (8%), Positives = 49/234 (20%), Gaps = 17/234 (7%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D  G +   S      +G    ++IG  L        I+                 +  L
Sbjct: 72  DGQGRITFASAGFAALLGMKPLELIGSTLS----PQVIERGASEQRA---DGVRVVEERL 124

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
            P++G  L        +P+   +    G              +   +      +    + 
Sbjct: 125 VPVDG--LPRWFSFIEMPV---SGSVDGPNWLRAGQDVTARVEAARVLDEAKSRAEAANV 179

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
            K    +    +       +P   +     +   T     +   ++  +           
Sbjct: 180 AKSRFLATVSHELR-----TPLNGILGMADLLLDTRLDPEQRTYVEAFRTSGKALLGLVD 234

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
              +             + F                     L    D  ++L  
Sbjct: 235 GILDFSRIEAGRLDLAAEPFDVAALVEGVVELLAPRAQDKGLEIALDIADDLAA 288


>gi|66816437|ref|XP_642228.1| histidine kinase [Dictyostelium discoideum AX4]
 gi|74856713|sp|Q54YH4|DHKB_DICDI RecName: Full=Hybrid signal transduction histidine kinase B
 gi|60470115|gb|EAL68095.1| histidine kinase [Dictyostelium discoideum AX4]
          Length = 1969

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 96/378 (25%), Positives = 173/378 (45%), Gaps = 26/378 (6%)

Query: 445  RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            +++E +  ++ S+   +++ + +  ++G+I   N A   +F   ++D+L  P    + + 
Sbjct: 821  KEIERKESRIQSLFRISNEALVVH-KDGLITDANPAFESMFQIKLQDLLY-PIQSGIWE- 877

Query: 505  TPSVMNHYLTEILSLDLRQTLE------KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM 558
                    L  +      +  +        T G     +   + +   K  +       +
Sbjct: 878  ----FLPALEGMFEPGASKLFDNPDMGVIETTGIDSSGRTFQVEVRTNKATYDGEPVDVI 933

Query: 559  --HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
               DI+  KQ   +  +A + AE  +  K  FL  VSHE+RTP+  ++  +++++     
Sbjct: 934  SIIDITGRKQL-MEADYALRKAEAANEAKVIFLTTVSHELRTPINGVLASADILERTTL- 991

Query: 617  PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
               +    E+ N I  SGN +LD++ND+LD SKIE+GKM +     S+ + +  +I +V 
Sbjct: 992  ---DSTQKEFLNCIKLSGNYLLDLINDILDYSKIEAGKMEIIKYDFSILKMLDNSIRIVS 1048

Query: 677  LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
                EK + +      N+P I+  D R +KQI LN LSN+I FT  G QIII     S++
Sbjct: 1049 KNIYEKGLDLCIFIDPNVPVIVNGDQRRIKQILLNFLSNSIKFTNHG-QIIIRVKLESDD 1107

Query: 736  E----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
                 +   V D+G+G+    L +    F QI +    + +GTGLGL ++K +     G 
Sbjct: 1108 STHSLIKFDVEDSGIGIKTEHLNQLFASFSQIDSGNSRKYQGTGLGLSISKRLCKMMGGD 1167

Query: 792  FYIFSTPAKGTLIEIIFP 809
              + S    G+      P
Sbjct: 1168 VKVKSEFGVGSTFSFTIP 1185


>gi|15923009|ref|NP_370543.1| two-component sensor histidine kinase [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|15925724|ref|NP_373257.1| two-component sensor histidine kinase [Staphylococcus aureus subsp.
           aureus N315]
 gi|21281748|ref|NP_644834.1| two-component sensor histidine kinase [Staphylococcus aureus subsp.
           aureus MW2]
 gi|49484931|ref|YP_042152.1| sensor kinase protein [Staphylococcus aureus subsp. aureus MSSA476]
 gi|57651128|ref|YP_184931.1| sensory box histidine kinase YycG [Staphylococcus aureus subsp.
           aureus COL]
 gi|82749796|ref|YP_415537.1| two-component sensor histidine kinase [Staphylococcus aureus RF122]
 gi|87161483|ref|YP_492741.1| sensory box histidine kinase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88193842|ref|YP_498627.1| sensory box histidine kinase VicK [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|148266466|ref|YP_001245409.1| multi-sensor signal transduction histidine kinase [Staphylococcus
           aureus subsp. aureus JH9]
 gi|150392499|ref|YP_001315174.1| PAS sensor protein [Staphylococcus aureus subsp. aureus JH1]
 gi|156978350|ref|YP_001440609.1| two-component sensor histidine kinase [Staphylococcus aureus subsp.
           aureus Mu3]
 gi|161508285|ref|YP_001573944.1| sensor histidine kinase VicK [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253316857|ref|ZP_04840070.1| sensory box histidine kinase [Staphylococcus aureus subsp. aureus
           str. CF-Marseille]
 gi|253730419|ref|ZP_04864584.1| two-component sensor histidine kinase [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253733820|ref|ZP_04867985.1| two-component sensor histidine kinase [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|254663953|ref|ZP_05143425.1| sensory box histidine kinase [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257793557|ref|ZP_05642536.1| two-component system sensor histidine kinase [Staphylococcus aureus
           A9781]
 gi|258411137|ref|ZP_05681416.1| two-component system sensor histidine kinase [Staphylococcus aureus
           A9763]
 gi|258420959|ref|ZP_05683893.1| sensory box histidine kinase [Staphylococcus aureus A9719]
 gi|258423219|ref|ZP_05686111.1| two-component sensor histidine kinase [Staphylococcus aureus A9635]
 gi|258438598|ref|ZP_05689821.1| sensory box histidine kinase [Staphylococcus aureus A9299]
 gi|258443946|ref|ZP_05692284.1| two-component sensor histidine kinase [Staphylococcus aureus A8115]
 gi|258446238|ref|ZP_05694398.1| two-component sensor histidine kinase [Staphylococcus aureus A6300]
 gi|258449103|ref|ZP_05697209.1| two-component sensor histidine kinase [Staphylococcus aureus A6224]
 gi|258451348|ref|ZP_05699379.1| two-component sensor histidine kinase [Staphylococcus aureus A5948]
 gi|258454419|ref|ZP_05702387.1| two-component sensor histidine kinase [Staphylococcus aureus A5937]
 gi|262049449|ref|ZP_06022321.1| two-component sensor histidine kinase [Staphylococcus aureus D30]
 gi|269201709|ref|YP_003280978.1| sensory box histidine kinase YycG [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282894298|ref|ZP_06302528.1| sensor protein kinase walK [Staphylococcus aureus A8117]
 gi|282902650|ref|ZP_06310543.1| sensory box histidine kinase VicK [Staphylococcus aureus subsp.
           aureus C160]
 gi|282920738|ref|ZP_06328457.1| sensor protein kinase walK [Staphylococcus aureus A9765]
 gi|282921309|ref|ZP_06329027.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           C427]
 gi|282927769|ref|ZP_06335383.1| sensor protein kinase walK [Staphylococcus aureus A10102]
 gi|283767809|ref|ZP_06340724.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           H19]
 gi|284023056|ref|ZP_06377454.1| sensory box histidine kinase YycG [Staphylococcus aureus subsp.
           aureus 132]
 gi|295406883|ref|ZP_06816687.1| sensor protein kinase walK [Staphylococcus aureus A8819]
 gi|296276711|ref|ZP_06859218.1| sensory box histidine kinase YycG [Staphylococcus aureus subsp.
           aureus MR1]
 gi|297209433|ref|ZP_06925831.1| sensor histidine kinase VicK [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|297245918|ref|ZP_06929780.1| sensor protein kinase walK [Staphylococcus aureus A8796]
 gi|300911457|ref|ZP_07128906.1| sensor histidine kinase [Staphylococcus aureus subsp. aureus TCH70]
 gi|81650258|sp|Q6GD71|WALK_STAAS RecName: Full=Sensor protein kinase walK
 gi|81695623|sp|Q5HJX6|WALK_STAAC RecName: Full=Sensor protein kinase walK
 gi|81704769|sp|Q7A215|WALK_STAAW RecName: Full=Sensor protein kinase walK
 gi|81704904|sp|Q7A305|WALK_STAAM RecName: Full=Sensor protein kinase walK
 gi|81706517|sp|Q7A8E0|WALK_STAAN RecName: Full=Sensor protein kinase walK
 gi|123098092|sp|Q2G2U4|WALK_STAA8 RecName: Full=Sensor protein kinase walK
 gi|123722426|sp|Q2FKN7|WALK_STAA3 RecName: Full=Sensor protein kinase walK
 gi|123740988|sp|Q2YUQ2|WALK_STAAB RecName: Full=Sensor protein kinase walK
 gi|212288550|sp|A7WWQ7|WALK_STAA1 RecName: Full=Sensor protein kinase walK
 gi|212288551|sp|A6TXG9|WALK_STAA2 RecName: Full=Sensor protein kinase walK
 gi|212288552|sp|A5INR0|WALK_STAA9 RecName: Full=Sensor protein kinase walK
 gi|212288554|sp|A8YYU2|WALK_STAAT RecName: Full=Sensor protein kinase walK
 gi|5114231|gb|AAD40238.1|AF136709_2 histidine kinase YycG [Staphylococcus aureus]
 gi|13699936|dbj|BAB41235.1| two-component sensor histidine kinase [Staphylococcus aureus subsp.
           aureus N315]
 gi|14245786|dbj|BAB56181.1| two-component sensor histidine kinase [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|21203183|dbj|BAB93884.1| two-component sensor histidine kinase [Staphylococcus aureus subsp.
           aureus MW2]
 gi|49243374|emb|CAG41791.1| sensor kinase protein [Staphylococcus aureus subsp. aureus MSSA476]
 gi|57285314|gb|AAW37408.1| sensory box histidine kinase YycG [Staphylococcus aureus subsp.
           aureus COL]
 gi|82655327|emb|CAI79707.1| two-component sensor histidine kinase [Staphylococcus aureus RF122]
 gi|87127457|gb|ABD21971.1| sensory box histidine kinase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87201400|gb|ABD29210.1| sensory box histidine kinase VicK, putative [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|147739535|gb|ABQ47833.1| PAS/PAC sensor signal transduction histidine kinase [Staphylococcus
           aureus subsp. aureus JH9]
 gi|149944951|gb|ABR50887.1| PAS sensor protein [Staphylococcus aureus subsp. aureus JH1]
 gi|156720485|dbj|BAF76902.1| two-component sensor histidine kinase [Staphylococcus aureus subsp.
           aureus Mu3]
 gi|160367094|gb|ABX28065.1| sensor histidine kinase VicK [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253725899|gb|EES94628.1| two-component sensor histidine kinase [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253728123|gb|EES96852.1| two-component sensor histidine kinase [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|257787529|gb|EEV25869.1| two-component system sensor histidine kinase [Staphylococcus aureus
           A9781]
 gi|257840022|gb|EEV64487.1| two-component system sensor histidine kinase [Staphylococcus aureus
           A9763]
 gi|257843149|gb|EEV67564.1| sensory box histidine kinase [Staphylococcus aureus A9719]
 gi|257846548|gb|EEV70570.1| two-component sensor histidine kinase [Staphylococcus aureus A9635]
 gi|257848157|gb|EEV72149.1| sensory box histidine kinase [Staphylococcus aureus A9299]
 gi|257850830|gb|EEV74774.1| two-component sensor histidine kinase [Staphylococcus aureus A8115]
 gi|257855064|gb|EEV78007.1| two-component sensor histidine kinase [Staphylococcus aureus A6300]
 gi|257857536|gb|EEV80431.1| two-component sensor histidine kinase [Staphylococcus aureus A6224]
 gi|257860878|gb|EEV83695.1| two-component sensor histidine kinase [Staphylococcus aureus A5948]
 gi|257863513|gb|EEV86273.1| two-component sensor histidine kinase [Staphylococcus aureus A5937]
 gi|259162446|gb|EEW47016.1| two-component sensor histidine kinase [Staphylococcus aureus D30]
 gi|262073999|gb|ACY09972.1| sensory box histidine kinase YycG [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282315724|gb|EFB46108.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           C427]
 gi|282590529|gb|EFB95607.1| sensor protein kinase walK [Staphylococcus aureus A10102]
 gi|282594146|gb|EFB99134.1| sensor protein kinase walK [Staphylococcus aureus A9765]
 gi|282597109|gb|EFC02068.1| sensory box histidine kinase VicK [Staphylococcus aureus subsp.
           aureus C160]
 gi|282763343|gb|EFC03473.1| sensor protein kinase walK [Staphylococcus aureus A8117]
 gi|283461688|gb|EFC08772.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           H19]
 gi|283469248|emb|CAQ48459.1| sensor protein YycG [Staphylococcus aureus subsp. aureus ST398]
 gi|285815746|gb|ADC36233.1| Two-component sensor kinase [Staphylococcus aureus 04-02981]
 gi|294968348|gb|EFG44373.1| sensor protein kinase walK [Staphylococcus aureus A8819]
 gi|296885894|gb|EFH24829.1| sensor histidine kinase VicK [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|297177283|gb|EFH36536.1| sensor protein kinase walK [Staphylococcus aureus A8796]
 gi|298693341|gb|ADI96563.1| sensory box histidine kinase YycG [Staphylococcus aureus subsp.
           aureus ED133]
 gi|300887636|gb|EFK82832.1| sensor histidine kinase [Staphylococcus aureus subsp. aureus TCH70]
 gi|302331791|gb|ADL21984.1| multi-sensor signal transduction histidine kinase, WalK
           [Staphylococcus aureus subsp. aureus JKD6159]
 gi|312828582|emb|CBX33424.1| sensory box histidine kinase YycG [Staphylococcus aureus subsp.
           aureus ECT-R 2]
 gi|315129562|gb|EFT85554.1| sensor histidine kinase VicK [Staphylococcus aureus subsp. aureus
           CGS03]
 gi|315197937|gb|EFU28270.1| sensor histidine kinase VicK [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|320141437|gb|EFW33280.1| PAS domain S-box [Staphylococcus aureus subsp. aureus MRSA131]
 gi|320144419|gb|EFW36184.1| PAS domain S-box [Staphylococcus aureus subsp. aureus MRSA177]
 gi|323440406|gb|EGA98119.1| two-component sensor histidine kinase [Staphylococcus aureus O11]
 gi|323443114|gb|EGB00733.1| two-component sensor histidine kinase [Staphylococcus aureus O46]
 gi|329731734|gb|EGG68094.1| sensor protein kinase WalK [Staphylococcus aureus subsp. aureus
           21189]
 gi|329732539|gb|EGG68889.1| sensor protein kinase WalK [Staphylococcus aureus subsp. aureus
           21193]
          Length = 608

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 80/388 (20%), Positives = 172/388 (44%), Gaps = 29/388 (7%)

Query: 426 ENMPQNGIEPEDVDTRINKRKM--EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           + + +  +   ++  R+ + +   E E  +L S++   SDGI   +R G I   N    K
Sbjct: 235 DEIGELALAFNNLSKRVQEAQANTESEKRRLDSVITHMSDGIIATDRRGRIRIVNDMALK 294

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           + G   EDI+       L       +        S  L    E+  +        ++   
Sbjct: 295 MLGMAKEDIIGYYMLSVLSLEDEFKLEEIQENNDSFLLDLNEEEGLIAR------VNFST 348

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
           I+++  F + Y   +HD++E +Q + +              + +F+A VSHE+RTPLT++
Sbjct: 349 IVQETGFVTGYIAVLHDVTEQQQVERE--------------RREFVANVSHELRTPLTSM 394

Query: 604 IGFSEVIKNQRFGPLGNPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
             + E ++    G   +     ++ +        ++ +VNDLL +SK+++    ++ E +
Sbjct: 395 NSYIEALEE---GAWKDEELAPQFLSVTREETERMIRLVNDLLQLSKMDNESDQINKEII 451

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
             +  +++ I+  ++ A  K                 D   + Q+  N+++NA+ ++   
Sbjct: 452 DFNMFINKIINRHEMSA--KDTTFIRDIPKKTIFTEFDPDKMTQVFDNVITNAMKYSRGD 509

Query: 723 GQIIISTTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
            ++            + +R++D G+G+   +++K    F ++  ++  +  GTGLGL ++
Sbjct: 510 KRVEFHVKQNPLYNRMTIRIKDNGIGIPINKVDKIFDRFYRVDKARTRKMGGTGLGLAIS 569

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           K +V+A+ G+ +  S   +GT I I  P
Sbjct: 570 KEIVEAHNGRIWANSVEGQGTSIFITLP 597


>gi|254236999|ref|ZP_04930322.1| hypothetical protein PACG_03025 [Pseudomonas aeruginosa C3719]
 gi|126168930|gb|EAZ54441.1| hypothetical protein PACG_03025 [Pseudomonas aeruginosa C3719]
          Length = 1417

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 111/661 (16%), Positives = 221/661 (33%), Gaps = 46/661 (6%)

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS--LTE 245
           R+     A  +                  ++    D           R +  V    +  
Sbjct: 334 RLRRRREAATQARLAAIVGNSADGIIGVGLDGVISDWNRGAEALFGYREEQAVGRRVVDL 393

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
                 +  + +    +  +E  +         + +          +             
Sbjct: 394 LVPPSKENEELDILARIARKEQVVSFDTVRRHQDGHLLDVAVTVSPILGPDGGVVGASKT 453

Query: 306 RNHPSLSAYFDEGENLTPETVDK-------------------CPIP-----FFVYSHGNL 341
               S     +         ++                               +   G +
Sbjct: 454 VRDISAKKAAEARIRELNTGLEHQIAERTAELRRLNVLLGSVLQAASEVSIITLDRDGII 513

Query: 342 FYANPSFLLLTKYKSVDDIEIAGGL----STLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397
              N     +  Y++ + +  A          L A           V++ R+++    A 
Sbjct: 514 SGFNLGAERMLGYRADEVVGKASPTLLHSERELLARGQELGEEGFRVLVARAEQEG--AE 571

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
            R  T      + L++T       ++        GI  +  + R  +R+M     QL   
Sbjct: 572 TREWTYLRKDGSPLSVTLSVTVLRDEAGAINGYLGIAVDVTEWRNAEREMAAARDQLQMA 631

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFG----YPVEDILRKPFTVFLEQNTPSVMNHYL 513
            +    GI   N     L  N  + +L+G         ++ + +   L           L
Sbjct: 632 ADVARLGIWRWNLADDSLQWNERMCELYGQPLALRDGGLVYEHWRSRLHPEDLERTEASL 691

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKNKL 571
              +       +    +      + +     +++    +    +    DI+  +Q + +L
Sbjct: 692 RAAVEGRGNYDVIFRVVLPDGGIRFIQAGAQVERDADGNPLQVTGINIDITSDQQLQARL 751

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
             AK+ A+  S+ KS FLA +SHEIRTP+ A++G  ++ +        N R  +Y +   
Sbjct: 752 REAKEQADAASAAKSSFLANMSHEIRTPMNAVLGMLQLARQTDL----NERQRDYLDKAS 807

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
            +   +L ++ND+LD SKIE+GK+ L   P  L+  + +   ++     +K + +     
Sbjct: 808 SAATSLLGLLNDILDYSKIEAGKLVLEMLPFELEPLMQDLAVVLSGNQGDKDVEVIFDID 867

Query: 692 NNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVILRV--RDTGVG 747
             +P  ++ D   ++QI +N+  NA+ FT  G   + +         V LRV   DTG+G
Sbjct: 868 PELPSAVVGDRLRLQQILINLAGNALKFTARGHVLVGLRRLAHDAHLVRLRVLVADTGIG 927

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           ++  + ++  + F Q   S   R  GTGLGL + K +VD   G+  + S P  G+     
Sbjct: 928 ISAEQQQRIFEGFTQAEASTSRRFGGTGLGLFICKRLVDLMGGELRVESAPGSGSRFWFD 987

Query: 808 F 808
            
Sbjct: 988 L 988



 Score =  110 bits (275), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 69/523 (13%), Positives = 141/523 (26%), Gaps = 61/523 (11%)

Query: 97  EISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTN 156
            ++E+  +       +++   +    ++         G LL        +          
Sbjct: 34  LVNEQQARMALEREAELLAEAVTRRVELYQYGLRGVRGALLTAGEAHIDRELFRR----- 88

Query: 157 LYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSS 216
                          +REF G RGFG +   RV     A   R  +         +  + 
Sbjct: 89  --------YSLTRDIDREFPGARGFGFIR--RVAAADEAGFLRQARADGQPEFRIQQLTP 138

Query: 217 VEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFH 276
            + E+Y I   +    + +      +                   LT   + +       
Sbjct: 139 HDGERYVIQYIEPVARNGQALGLDIASEANRREAARAALETGQVRLTGPITLVQASGLRQ 198

Query: 277 TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY 336
              L                +                 +     LT E +   PI     
Sbjct: 199 QSFLILMPIY----------RSGITPPPGPQRELEGFGWSYAPLLTGEVLAGLPI----- 243

Query: 337 SHGNLFYANPS-FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIA 395
                   N +  L L+                   A +L  +   + +          A
Sbjct: 244 -------DNAAIHLELSDVTGDGAAVPFFVNGAAAPAQRLFGHMLRREIYGRHWQMAFSA 296

Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
               +  +       L +             N    G        R+ +R+      +L 
Sbjct: 297 LPLFVQRLHQPSPRILFLAGSLVSLLLAALVNASALG--------RLRRRREAATQARLA 348

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS-VMNHYLT 514
           +I+  ++DGI  +  +G+I   NR    LFGY  E  + +     L   +        L 
Sbjct: 349 AIVGNSADGIIGVGLDGVISDWNRGAEALFGYREEQAVGRRVVDLLVPPSKENEELDILA 408

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNK 570
            I      Q +   T+   ++  LL + + +  +       +    T+ DIS  K  + +
Sbjct: 409 RIA--RKEQVVSFDTVRRHQDGHLLDVAVTVSPILGPDGGVVGASKTVRDISAKKAAEAR 466

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
           +       E + + ++        E+R  L  ++G      ++
Sbjct: 467 IRELNTGLEHQIAERTA-------ELRR-LNVLLGSVLQAASE 501



 Score = 93.9 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/404 (8%), Positives = 93/404 (23%), Gaps = 46/404 (11%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL--HIDPNNHIGDLLKRQNTWYGK 146
           +   G + + +       G    + +G R+ D+        +  + +  + +++      
Sbjct: 361 VGLDGVISDWNRGAEALFGYREEQAVGRRVVDLLVPPSKENEELDILARIARKEQVVSFD 420

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR------- 199
           T     +G  L V + ++  PI   +    G      V          A  +        
Sbjct: 421 TVRRHQDGHLLDVAVTVS--PILGPDGGVVGASK--TVRDISAKKAAEARIRELNTGLEH 476

Query: 200 ---------------LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244
                          L        E+       +                R    V   +
Sbjct: 477 QIAERTAELRRLNVLLGSVLQAASEVSIITLDRDGIISGFNLGAERMLGYRADEVVGKAS 536

Query: 245 EYYAHKDDVLKTEKYPL----------LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294
               H +  L      L             +E +   +  +   + +  +       L++
Sbjct: 537 PTLLHSERELLARGQELGEEGFRVLVARAEQEGAETREWTYLRKDGSPLSVTLSVTVLRD 596

Query: 295 NSKESFEYLSHRNHPSLSAYFDEG----ENLTPETVDKCPIPFFVYS-HGNLFYANPSFL 349
            +     YL      +     +       +      D   +  + ++   +    N    
Sbjct: 597 EAGAINGYLGIAVDVTEWRNAEREMAAARDQLQMAADVARLGIWRWNLADDSLQWNERMC 656

Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
            L        +   G +     +    ++       L  +             +  +   
Sbjct: 657 ELYGQPL--ALRDGGLVYEHWRSRLHPEDLERTEASLRAAVEGRGNYDVIFRVVLPDGG- 713

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
              +      + +     +   GI  +    +  + ++     Q
Sbjct: 714 IRFIQAGAQVERDADGNPLQVTGINIDITSDQQLQARLREAKEQ 757


>gi|302382808|ref|YP_003818631.1| integral membrane sensor hybrid histidine kinase [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302193436|gb|ADL01008.1| integral membrane sensor hybrid histidine kinase [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 761

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 84/382 (21%), Positives = 156/382 (40%), Gaps = 26/382 (6%)

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
            + QL   ++   DG+   + +  ++  N   ++      E                  +
Sbjct: 245 SLNQLREAIDTMPDGLGFYDADDRLVIWNARYAE---VNTELAAALEVGAKFRDMLQIGL 301

Query: 510 NHYLTEILSLDLRQTLEKITLGSTK----------EEKLLSLRIIIKKLPFSSCYSLTMH 559
              L        ++ +E+      +           ++ L ++    +          ++
Sbjct: 302 EQGLYAEAVGREQEWIEERLAARRRLSNTLEQQISGDRWLRVQD---RRTAQGGIVTVVN 358

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           DI++ K++   L+ A+  AE  +  KS+FLA +SHEIRTPL  +IG ++ +         
Sbjct: 359 DITDLKRDAQALAEARDTAETANRAKSEFLANMSHEIRTPLNGVIGLTQALARTEL---- 414

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
           +    E  N I  SG  +  +++D+LD++++ESG++ +  EP  L  A++EA  L    A
Sbjct: 415 DHDQREILNLIQSSGVTLQTLLSDILDLARVESGRLEIADEPFDLARAINEAAHLYGAPA 474

Query: 680 NEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-- 736
            EK +             +  D+  +KQ+  N++SNA+ FT  G  + ++     + +  
Sbjct: 475 AEKGLQFFVDIDPAAEGWVRGDVVRLKQVLTNLVSNAVKFTAKGF-VSLNAAVGRDRDGA 533

Query: 737 --VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
             +   V DTGVG       +    F Q   +   R  GTGLGL + + + D   G    
Sbjct: 534 AILRFTVEDTGVGFDAEAKARLFTRFEQADGTITRRFGGTGLGLAICRQLADMMGGHLDC 593

Query: 795 FSTPAKGTLIEIIFPLYDTSHP 816
            S    G+   +  PL     P
Sbjct: 594 ESEAGGGSTFILTLPLIAAEAP 615


>gi|125718371|ref|YP_001035504.1| histidine kinase [Streptococcus sanguinis SK36]
 gi|125498288|gb|ABN44954.1| Histidine kinase, putative [Streptococcus sanguinis SK36]
 gi|324993853|gb|EGC25772.1| sensor histidine kinase VicK [Streptococcus sanguinis SK405]
 gi|324994826|gb|EGC26739.1| sensor histidine kinase VicK [Streptococcus sanguinis SK678]
 gi|325687267|gb|EGD29289.1| sensor histidine kinase VicK [Streptococcus sanguinis SK72]
 gi|327463117|gb|EGF09438.1| sensor histidine kinase VicK [Streptococcus sanguinis SK1]
 gi|327470648|gb|EGF16104.1| sensor histidine kinase VicK [Streptococcus sanguinis SK330]
 gi|327474728|gb|EGF20133.1| sensor histidine kinase VicK [Streptococcus sanguinis SK408]
 gi|327490285|gb|EGF22073.1| sensor histidine kinase VicK [Streptococcus sanguinis SK1058]
 gi|328946752|gb|EGG40890.1| sensor histidine kinase VicK [Streptococcus sanguinis SK1087]
 gi|332358682|gb|EGJ36505.1| sensor histidine kinase VicK [Streptococcus sanguinis SK355]
 gi|332358953|gb|EGJ36774.1| sensor histidine kinase VicK [Streptococcus sanguinis SK49]
 gi|332362448|gb|EGJ40248.1| sensor histidine kinase VicK [Streptococcus sanguinis SK1056]
 gi|332367142|gb|EGJ44878.1| sensor histidine kinase VicK [Streptococcus sanguinis SK1059]
          Length = 449

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 90/403 (22%), Positives = 169/403 (41%), Gaps = 34/403 (8%)

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDT-RINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
           +         PE         +  +  R+    +E E  +L SIL   +DG+   NR G 
Sbjct: 56  YSEVLDMQGSPEITDMTNSINDLSEVIRLTHENLEQETKRLSSILSYMTDGVLATNRRGQ 115

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
           I++ N   +K  G   +++        L  +    +   +T +  L +    E       
Sbjct: 116 IITINDMATKQLGVKRDEVQNMSILDLLSISDEYDLRDLITNVPELTIDSQDE------- 168

Query: 534 KEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
              + LSLR+    +   S +       +HD +E  +E+ +              +  F+
Sbjct: 169 -NGEYLSLRVRFALVRRESGFISGLVAVLHDTTEQDKEERE--------------RRLFV 213

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
           + VSHE+RTPLT++  + E +     G L  P   ++        N ++ +V DLL +S+
Sbjct: 214 SNVSHELRTPLTSVKSYLEAL---DEGALSEPVAPDFVKVSLNETNRMMRMVTDLLSLSR 270

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLV---QLYANEKRILIRTSFANNIPRILADLRSVKQ 706
           I++   +L  E  +    ++  ++     +     K+  I   +      +  D   + Q
Sbjct: 271 IDNETSHLEVELTNFTAFITFILNRFDKIKNQDETKKYEIIRDYPITPIWVEIDTDKLTQ 330

Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
           +  NI++NAI ++P GG I +S   T   ++IL + D G+G+   +L K    F ++  +
Sbjct: 331 VIDNIMNNAIKYSPDGGTITVSIKTTDE-QLILSIADEGLGIPKQDLPKIFDRFYRVDKA 389

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +     GTGLGL +AK ++  + G  +  S    G+   I+ P
Sbjct: 390 RSRAQGGTGLGLAIAKEIIKQHQGFIWAKSEYGVGSTFTIVLP 432


>gi|85714073|ref|ZP_01045062.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A]
 gi|85699199|gb|EAQ37067.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A]
          Length = 752

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 89/368 (24%), Positives = 162/368 (44%), Gaps = 16/368 (4%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           +++    +   + E+  D I + +  GII S N A   L      D+L   F +      
Sbjct: 101 ELKEAEERSRCLFESQGDLIVLRDGNGIITSVNDAYCILAQRSRADLLGIRFAL------ 154

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISE 563
              +      ++  +  +  ++    +    + ++ R  + ++  +          D+++
Sbjct: 155 --PVLEQGESVIEANGTRVYDQRVETALGP-RWIAWREALMRIDANHPAELQCVGRDVTD 211

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + K  L  A+  A   +  KS FLA  SHE RTPL  IIG S ++      P      
Sbjct: 212 RTEAKRALGEARDHANAANQAKSRFLAMTSHEFRTPLNGIIGMSGLLLETALTP----EQ 267

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
             Y   +  SG+ +L ++ +LLD S+IE+GK++L   P  L + + +   L+   A  ++
Sbjct: 268 TTYVKAVKASGDALLSLIEELLDYSRIEAGKIDLEHRPFILSDLIEDITELLAPRAQARQ 327

Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           + I +     +P  ++ D   ++Q+ LN+  NAI FT +GG  +I T      ++   VR
Sbjct: 328 LAIASYIDETLPTEVIGDAARLRQVLLNLAGNAIKFTSTGGVALIVTPGVGRNDIRFMVR 387

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG+G+      +  + F Q          G+GLGL ++  +V    G   + S P  G+
Sbjct: 388 DTGIGIAPDAQARIFRDFEQADGQIARNYGGSGLGLSISDRIVKRMGGHITLQSEPGSGS 447

Query: 803 LIEIIFPL 810
             E+  PL
Sbjct: 448 TFEVSVPL 455


>gi|206889477|ref|YP_002248008.1| alkaline phosphatase synthesis sensor protein PhoR
           [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206741415|gb|ACI20472.1| alkaline phosphatase synthesis sensor protein PhoR
           [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 392

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 86/360 (23%), Positives = 164/360 (45%), Gaps = 30/360 (8%)

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
             +IL++ ++G+ II+ +G I+  N++   +          +     +           +
Sbjct: 50  FETILKSITEGLLIIDPKGYIMLANQSFKDILKIDEPP-EGRLVIEVIRN------IDLI 102

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKN 569
             I S   ++      +   K  K + L      +  S        + +HDI+  KQ +N
Sbjct: 103 NLISSSISKKEDLAEEITLKKAGKDIYLLAKAMPVVDSEGTISFLIILLHDITRLKQLEN 162

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
                          + DF+A VSHE++TP+TAI G++E + +            ++   
Sbjct: 163 V--------------RRDFVANVSHELKTPVTAIKGYAETLLDGAIN--DKENSKKFIEI 206

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I    + +  +V DLL +S+IE G + +  E + LDE +S    +++  A +K +L++  
Sbjct: 207 IKNQADRLNALVEDLLTLSRIEFGDIKIEKENIVLDELISSVFQILKDKAQKKGVLLQKE 266

Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749
                  I AD   + QI +N++ NAI FT  G  + +     +++ V + V DTG+G+ 
Sbjct: 267 IPPET-AIYADQYRMSQIMINLVDNAIKFTEKGF-VKVRFFKENSKGV-ISVEDTGIGIP 323

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
              + +  + F ++  ++  +  GTGLGL + K +V A+  +  I S   KGT ++I+ P
Sbjct: 324 KEHIHRIGERFYRVDKARSRQLGGTGLGLAIVKHLVLAHGWQLQIESEVEKGTKVKIVIP 383


>gi|261406014|ref|YP_003242255.1| multi-sensor signal transduction histidine kinase [Paenibacillus
           sp. Y412MC10]
 gi|261282477|gb|ACX64448.1| multi-sensor signal transduction histidine kinase [Paenibacillus
           sp. Y412MC10]
          Length = 477

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 81/370 (21%), Positives = 150/370 (40%), Gaps = 23/370 (6%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           R +  E   L S+L + SD +   +  G ++  N    ++                    
Sbjct: 120 RNLNHEKEHLSSVLRSMSDAVITFDNHGQVILVNPPGLEIMKTWKGLQWDDELQG--GGW 177

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564
              VM   L+E+    + +  ++      K+    +    +          + + DI+E 
Sbjct: 178 AADVMPKPLSELYYATVNEGKDQSADLHVKQGIWSAHMAPLYSDDVIRGAVVVLRDITEQ 237

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
              +                ++DF+A VSHEIRTPL+ + G+SE + +            
Sbjct: 238 VTLE--------------KMRTDFIANVSHEIRTPLSMMQGYSEALLDGM--AASPEESR 281

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           E    I      +  +V DLLD++++E+G   L    +   E          + A E+ I
Sbjct: 282 ELIQVIHEESLRMGRLVKDLLDLTRMEAGHAELSLREMDAGELCERVFRKFAVRAKERDI 341

Query: 685 LIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIII---STTHTSNEEVILR 740
            ++ +  ++  ++ A D   ++Q+  N+L NA   TPSG +I I       ++ E + ++
Sbjct: 342 DLQLNKLHSNLQLEAADEDKLEQVLTNLLDNAFRHTPSGKKIQITADRIALSNTEALQVK 401

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
           V D GVG+   +L    + F +   ++      GTG+GL + K +V A+ G     S   
Sbjct: 402 VCDQGVGIPPEDLPFVFERFYKADKARVRGETVGTGIGLAIVKNIVTAHHGTINATSEVG 461

Query: 800 KGTLIEIIFP 809
           KGT+  +  P
Sbjct: 462 KGTVFTMTIP 471


>gi|253581814|ref|ZP_04859038.1| multi-sensor signal transduction histidine kinase [Fusobacterium
           varium ATCC 27725]
 gi|251836163|gb|EES64700.1| multi-sensor signal transduction histidine kinase [Fusobacterium
           varium ATCC 27725]
          Length = 617

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 92/364 (25%), Positives = 167/364 (45%), Gaps = 21/364 (5%)

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT-PSV 508
           E  +  +I+E+ +DGI + ++E  IL  N A  KL      ++L KPF   +        
Sbjct: 266 EKSKAEAIVESINDGIIVTDKENKILLINNAAEKLLNIKESELLDKPFFTAIPNKKIHES 325

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI--IIKKLPFSSCYSLTMHDISEWKQ 566
           +N  +         + LE     + ++     + I  II K   +      + DI++ K+
Sbjct: 326 INEVINSREIKSTVKQLELSLNPALEKNIYCRVFINSIIGKNKENLGIVTLLQDITKLKE 385

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
                             KSDF++ VSHE RTPLT+I    E++K+   G + N    E 
Sbjct: 386 I--------------DQMKSDFVSTVSHEFRTPLTSIGMAVELLKDGSVGTI-NETQQEL 430

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
              I      +  ++ DLLD+S++ESGK +L FE  ++ + +   ++ ++  +  + + I
Sbjct: 431 LKVIKEDSERLNVLIKDLLDLSRLESGKTHLKFEKNNIKKIIETTVNSLKNLSENRNVKI 490

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHF-TPS-GGQIIISTTHTSNEEVILRVRDT 744
                 +   +LAD+  +  +  N+++NAI + +    G III       + +++ V D 
Sbjct: 491 EIKNVGSSLFVLADINKIILVLTNLITNAIKYKSEEREGHIIIE-AFKKEKNIVVSVEDN 549

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G G+    +EK    F Q+  S + + EGTGLGL + K ++  + G+ ++ S   KG+  
Sbjct: 550 GRGIPEEYIEKIFNKFIQVKVSNEGKIEGTGLGLSICKEIIKNHGGEIWVDSILGKGSTF 609

Query: 805 EIIF 808
               
Sbjct: 610 YFSL 613


>gi|157273376|gb|ABV27275.1| alkaline phosphatase synthesis sensor protein PhoR [Candidatus
           Chloracidobacterium thermophilum]
          Length = 363

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 81/366 (22%), Positives = 164/366 (44%), Gaps = 25/366 (6%)

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
           L ++L +  +GI +I+++  ++  N+A   +F               ++      ++   
Sbjct: 13  LEAVLGSLREGILVIDQQTEVVLYNQAAIDIFNLSPVMTGPLRL---IDITRNKAIHDGF 69

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNK 570
            ++L        E    G   +E+  S R     +P +           D+++  + +  
Sbjct: 70  RQVLEEGRPFDAELEIFGI--QERTFSFRATPLIMPSAHEVVGAIGVFFDVTQLVRLE-- 125

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
                         + +F A +SHE+RTPLT+I+ + E + N       N   I++   I
Sbjct: 126 ------------RVRREFFANLSHELRTPLTSILAYVETLLNGAI--YDNENNIQFLQII 171

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
           ++    + ++V D+ D+S IE+G+  L    + L   V     LV   A  +++  R   
Sbjct: 172 NKHATRMQNLVRDIADLSAIEAGEFKLEPVTIELKAFVDNLAVLVLPEATTRQVTFRNEV 231

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
              + ++ AD ++++QI +N++ NA+ F   GG+++++    S+   ++ VRDTG+G+  
Sbjct: 232 PAGV-QVYADPQALEQILMNLIINAVKFNRPGGEVVVTANFESDVRTVIAVRDTGIGIEA 290

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             L +  +   ++  S+     GTGLGL + K +V  + G   + STP  G+   +  P 
Sbjct: 291 KHLGRIFERLYRVDKSRSQEVGGTGLGLAIVKHLVLNHGGDISVDSTPGVGSEFRVRLPR 350

Query: 811 YDTSHP 816
             T+ P
Sbjct: 351 PVTALP 356


>gi|113474471|ref|YP_720532.1| response regulator receiver sensor signal transduction histidine
           kinase [Trichodesmium erythraeum IMS101]
 gi|110165519|gb|ABG50059.1| response regulator receiver sensor signal transduction histidine
           kinase [Trichodesmium erythraeum IMS101]
          Length = 395

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 86/264 (32%), Positives = 141/264 (53%), Gaps = 15/264 (5%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  +E  +L   K  AE  +  KS FLA +SHE+RTPL AIIG+SE++       LG+  
Sbjct: 127 QQLKENKRLKQEKHEAEAANRAKSVFLANMSHELRTPLNAIIGYSEILLEDAHS-LGSKD 185

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
           +I   N I  SG  +L I+ND+LD+SKIE+GKM++H+E V++   +   ++ +Q    + 
Sbjct: 186 FIHDINNIHTSGKHLLTIINDILDLSKIEAGKMDVHWESVNIMVLIENVLATIQPLIEQN 245

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI-IISTTHTSNEEV---- 737
             ++     +N   I+AD   ++Q+ LN+LSNA  FT +G  I  +   +   + +    
Sbjct: 246 NNILEIICEDNQEPIMADPNKMRQVILNLLSNAAKFTENGKIILKVKVANNDEDFISQNR 305

Query: 738 ---------ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                    IL V DTG+G++  +++   +PF Q  NS   +  GTGLGL +++      
Sbjct: 306 DCNFTDKVLILSVADTGIGISEEKIDSLFQPFTQADNSTTRKYGGTGLGLAISRHFCKMM 365

Query: 789 MGKFYIFSTPAKGTLIEIIFPLYD 812
            G   + S   KG++  + FP+  
Sbjct: 366 GGDITVVSEVNKGSIFTVKFPVPQ 389


>gi|329929853|ref|ZP_08283529.1| sensor histidine kinase ResE [Paenibacillus sp. HGF5]
 gi|328935831|gb|EGG32292.1| sensor histidine kinase ResE [Paenibacillus sp. HGF5]
          Length = 477

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 81/370 (21%), Positives = 150/370 (40%), Gaps = 23/370 (6%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           R +  E   L S+L + SD +   +  G ++  N    ++                    
Sbjct: 120 RNLNHEKEHLSSVLRSMSDAVITFDNHGQVILVNPPGLEIMKTWKGLQWDDELQG--GGW 177

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564
              VM   L+E+    + +  ++      K+    +    +          + + DI+E 
Sbjct: 178 AADVMPKPLSELYYATVNEGKDQSADLHVKQGIWSAHMAPLYSDDVIRGAVVVLRDITEQ 237

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
              +                ++DF+A VSHEIRTPL+ + G+SE + +            
Sbjct: 238 VTLE--------------KMRTDFIANVSHEIRTPLSMMQGYSEALLDGM--AASPEESR 281

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           E    I      +  +V DLLD++++E+G   L    +   E          + A E+ I
Sbjct: 282 ELIQVIHEESLRMGRLVKDLLDLTRMEAGHAELSLREMDAGELCERVFRKFAVRAKERDI 341

Query: 685 LIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIII---STTHTSNEEVILR 740
            ++ +  ++  ++ A D   ++Q+  N+L NA   TPSG +I I       ++ E + ++
Sbjct: 342 DLQLNKLHSNLQLEAADEDKLEQVLTNLLDNAFRHTPSGKKIQITADRIAVSNTEALQVK 401

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
           V D GVG+   +L    + F +   ++      GTG+GL + K +V A+ G     S   
Sbjct: 402 VCDQGVGIPPEDLPFVFERFYKADKARVRGETVGTGIGLAIVKNIVTAHHGTINATSEVG 461

Query: 800 KGTLIEIIFP 809
           KGT+  +  P
Sbjct: 462 KGTVFTMTIP 471


>gi|283852351|ref|ZP_06369622.1| signal transduction histidine kinase with CheB and CheR activity
            [Desulfovibrio sp. FW1012B]
 gi|283572308|gb|EFC20297.1| signal transduction histidine kinase with CheB and CheR activity
            [Desulfovibrio sp. FW1012B]
          Length = 1919

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 115/778 (14%), Positives = 252/778 (32%), Gaps = 84/778 (10%)

Query: 91   AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150
            A     E++    +  G    ++ G  L  +                        +T   
Sbjct: 1006 ADNTFIEVNRAFARDRGYTPEELAGRPLSVLFPPETRQRVQAAIQGFDATGHGVIETEHL 1065

Query: 151  PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
              +G+ + V +++  L       +                       + + +  S     
Sbjct: 1066 RKDGSRMPVLVEVTVL--RDAAGKP--ASRVAYALDITERKKAEEAVRDMARFPSENPNP 1121

Query: 211  KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270
                 +         +        R   + S   E     +      +    +   +   
Sbjct: 1122 VFRVGA-------DMAVSQANTASREFLRHSGSGEGETFPEAYRPAVREAFASGGVTQF- 1173

Query: 271  EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330
                     + +         +      +   +             + E    + VD  P
Sbjct: 1174 ------EAAVGERMFVFAVCPVPVRGYANIYGMDMTARKKAEEALAKSEQRLRQLVDLAP 1227

Query: 331  IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK-------- 382
                + S G   Y NP+ + L    S +++     +S +    + +    I+        
Sbjct: 1228 DAIIIQSGGRFAYVNPATVRLFGATSAEELLGEDIVSHVHPDSREAVRKRIRMANEERAT 1287

Query: 383  ----PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
                 +   R D T +   A     ++       +      +  +  E   +     E V
Sbjct: 1288 LPSIELAYLRLDGTSVPVEAVAAPFEYQGGPGSLVFARDISERRRVAEETKRRTDMAEAV 1347

Query: 439  DTRINKRKMEIEVM--------QLCSILEATSDGIAII--NREGIILSTNRAVSKLFGYP 488
                +     +           +L  + +++   IA +  + +G      +    +    
Sbjct: 1348 ARVRDTYVSGLSPAVIFGTALGELLRLTDSSYGFIAELETDDKGRPF---QQFLAISNLA 1404

Query: 489  VEDILRKPFTVFLEQNTPSVMNHYLTEIL-SLDLRQTLEK-----ITLGSTKEEKLL--- 539
             E    + +  +      +     L     +        +        G   +       
Sbjct: 1405 WEAGTPRFYAQYAPSGLMTHAMDGLHGAAVASGGPVIANRPGEDPRASGHRPDGHPALDN 1464

Query: 540  --------------SLRIIIKKLPFSSCYSLTMH-------DISEWKQEKNKLSHAKKIA 578
                          S+ +  +   + +  + ++         + E  + + +L  AK+ A
Sbjct: 1465 FLGLPMFHGRECMGSIGLANRPEGYDNRLAASIRPLVETCAQLIERLRAERRLVAAKQAA 1524

Query: 579  EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
            E  S  KS+FLA +SHEIRTPL  ++G  ++++        +    EYA+   +S   + 
Sbjct: 1525 EAASLSKSEFLANMSHEIRTPLNGVLGMLQLMQTTAL----DSEQKEYADLAVKSSQRLT 1580

Query: 639  DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-I 697
             +++D+LD+S +ESG++ +   P +  +  +  + L  L A +K + +      ++P  I
Sbjct: 1581 RLLSDILDLSLVESGRLTIREAPCAPADLRAAVLDLFALPARDKGVALSVFLDESLPEKI 1640

Query: 698  LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-----EVILRVRDTGVGMTNYE 752
            + D   ++QI  N++ NA+ FT  G Q+ +     S        V++ V DTG+G+ + +
Sbjct: 1641 VGDEVRLRQILFNLVGNAVKFTDQG-QVTLEIGPASRRFDAAFRVLVTVADTGIGIPDDQ 1699

Query: 753  LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            L    +PFGQ+      R  G GLGL + + +V    G+  + S   +GT++ +  PL
Sbjct: 1700 LAAIFEPFGQVEGVYVRRFGGAGLGLSIVRRLVGLMGGELAVDSEEGRGTIMYVSLPL 1757



 Score =  145 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 51/508 (10%), Positives = 132/508 (25%), Gaps = 35/508 (6%)

Query: 90   DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
            D    +   +E   +  G    + +G    ++    + +P   I +       W G+   
Sbjct: 883  DLDNRILFWTEGCQRLFGWTREEAVGRISSELLGTEYPEPQAAIMERFLEDGRWSGQLRK 942

Query: 150  WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
               +G    + +    L                + +     N   A  +R  + F    E
Sbjct: 943  RTRDGRPKDLAVTW--LLNRDPAGRP--LSILEVANDVTEQNRLEAQARRWSRVFEA-AE 997

Query: 210  IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
                H       +   ++           +++          +  +  +  +   + +  
Sbjct: 998  FGLAHVDAADNTFIEVNRAFARDRGYTPEELAGRPLSVLFPPETRQRVQAAIQGFDATGH 1057

Query: 270  PEQEDFH-TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
               E  H   + ++         L++ + +    +++    +     +E          +
Sbjct: 1058 GVIETEHLRKDGSRMPVLVEVTVLRDAAGKPASRVAYALDITERKKAEEAVRDMARFPSE 1117

Query: 329  CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388
             P P F                         +  A   S        S      P     
Sbjct: 1118 NPNPVFRVGADM------------------AVSQANTASREFLRHSGSGEGETFPEAYRP 1159

Query: 389  SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
            + R   A+           E        P             N    +    +  +  + 
Sbjct: 1160 AVREAFASGGVTQFEAAVGERMFVFAVCPVPVR------GYANIYGMDMTARKKAEEALA 1213

Query: 449  IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG-YPVEDILRKPFTVFLEQNTPS 507
                +L  +++   D I  I   G     N A  +LFG    E++L +     +  ++  
Sbjct: 1214 KSEQRLRQLVDLAPDAII-IQSGGRFAYVNPATVRLFGATSAEELLGEDIVSHVHPDSRE 1272

Query: 508  VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP--FSSCYSLTMHDISEWK 565
             +   +  + + +              +   + +  +             +   DISE +
Sbjct: 1273 AVRKRI-RMANEERATLPSIELAYLRLDGTSVPVEAVAAPFEYQGGPGSLVFARDISERR 1331

Query: 566  QEKNKLSHAKKIAEKESSHKSDFLARVS 593
            +   +      +AE  +  +  +++ +S
Sbjct: 1332 RVAEETKRRTDMAEAVARVRDTYVSGLS 1359



 Score =  104 bits (259), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 60/514 (11%), Positives = 134/514 (26%), Gaps = 73/514 (14%)

Query: 89  IDAHGYLKEI----SEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144
           ID  G +  +    +  L    G+ A  +   +L   +   H+        L        
Sbjct: 537 IDRDGRVLRLIGDTNPYLE--FGSGAPSLTVRKLARKALRPHLRRLMD-AALADGHEHAS 593

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
           G   L P++G     P++L A+P+     +         V V      P A  +    + 
Sbjct: 594 G---LLPLDGAGA-APVELRAIPVPDARGQ------TAYVLVVFEKVAPDAPERDSLVRQ 643

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
                                         R + ++  L +         +T    L  S
Sbjct: 644 CE---------------------NEADLVARYEAELDLLGDQLERSVAGYETLTEELKAS 682

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
            E  +   E+  + N      ++   +L          L  R     +A       L   
Sbjct: 683 NEELVSMNEELQSSNEEMEASREELQSLNEELSSLNTELQARIEEVATARTFVENLLAAT 742

Query: 325 TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
            +        +     +    P+ L L    + D       + T   A  L D+      
Sbjct: 743 HL----ATVVLDQSLAVVRFTPAALGLFHLIATDAGRPVEQVKTTFAADHLLDD-----C 793

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
                    +    R    +W  E +                         +    +  +
Sbjct: 794 RRVLDHGAVVEREFRAEDGRWFLERAF-------PFREPSGVVAGVVLTFTDITMLKDAE 846

Query: 445 RKMEIEVMQLCSILEATSD------------GIAIINREGIILSTNRAVSKLFGYPVEDI 492
             +     +L ++++  ++             + + + +  IL       +LFG+  E+ 
Sbjct: 847 AVLRRGKAELEALVDRRTEELREQARLLDLTNVMVRDLDNRILFWTEGCQRLFGWTREEA 906

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
           + +  +  L    P      +   L               T++ +   L +        +
Sbjct: 907 VGRISSELLGTEYPEPQAAIMERFLEDGRWSG---QLRKRTRDGRPKDLAVTWLLNRDPA 963

Query: 553 C----YSLTMHDISEWKQEKNKLSHAKKIAEKES 582
                     +D++E  + + +     ++ E   
Sbjct: 964 GRPLSILEVANDVTEQNRLEAQARRWSRVFEAAE 997


>gi|52145273|ref|YP_086730.1| sensor histidine kinase [Bacillus cereus E33L]
 gi|51978742|gb|AAU20292.1| sensor histidine kinase [Bacillus cereus E33L]
          Length = 613

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 84/372 (22%), Positives = 158/372 (42%), Gaps = 25/372 (6%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +  +   E E  +L S+L   +DG+   +R+G I+  N    K+     E  L +     
Sbjct: 258 QQARSSTESERRKLSSVLSHMTDGVIATDRKGDIILLNDPAEKMLNVSRETALDQSVLEV 317

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
           L       ++H   E  S+ L  +                  +I K+   ++     ++D
Sbjct: 318 LGIQEEFTLDHLYEEPDSVLLDFSTRNEPYILRAS-----FSVIQKETGKANGLIAVLYD 372

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           ++                E+    + +F+A VSHE+RTPLT +  + E + +  +     
Sbjct: 373 VT--------------EQERIERERREFVANVSHELRTPLTTMRSYLEALTDGAWQDPNI 418

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
                +          ++ +VN LL +SK++S +  L  E V   +  +  I   +  + 
Sbjct: 419 APQ--FLTVTQEETERMIRLVNALLQLSKLDSTEHRLMKEWVDFTDFFNNIIDRFE-MSK 475

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV-IL 739
           E+ +  + SF+     I  D   + Q+  NI+SNA+ ++P GG +          E+  +
Sbjct: 476 EQNVSFKRSFSKKSRFIDMDTDKITQVLYNIISNALKYSPEGGTVT--YRLRDRGELLEI 533

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V D G+G+    ++K  + F ++  ++  +  GTGLGL +AK M++A+ G  +  S   
Sbjct: 534 SVSDQGMGIPKENVDKIFERFYRVDKARSRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEG 593

Query: 800 KGTLIEIIFPLY 811
           KGT I    P+ 
Sbjct: 594 KGTTIYFTLPMA 605


>gi|317485618|ref|ZP_07944494.1| response regulator receiver domain-containing protein [Bilophila
           wadsworthia 3_1_6]
 gi|316923155|gb|EFV44365.1| response regulator receiver domain-containing protein [Bilophila
           wadsworthia 3_1_6]
          Length = 845

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 94/379 (24%), Positives = 170/379 (44%), Gaps = 13/379 (3%)

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIIN--REGIILSTNRAVSKLFGYPVEDILRKPF 497
            +  ++ +     +L  IL  + D + +I   R+  I   +    ++ G    DI     
Sbjct: 179 QKKAEQAI-AYREKLFDILCNSIDDVFVIYHVRDKRIEYVSGNADRILGLGNNDISI--L 235

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-CYSL 556
              L      V++ +  +      +     +    T E++ + L +   K    +  Y +
Sbjct: 236 YSRLSAANEKVLDDFSKQAPFDAPKGCDFSMKDTLTGEDRFMHLHLYPVKENAGTIRYVV 295

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
           ++ D +   + +  L  A   A++ ++ K DFL+R+SHEIRTP+ AIIG + +       
Sbjct: 296 SLSDRTHEVKTRQTLKDALASAQQANTAKRDFLSRMSHEIRTPMNAIIGMATIAAAHIQ- 354

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
              + R  +  + I  S   ++ ++ND+LD+SKIESGK+ +H E   L   +   +S++ 
Sbjct: 355 --NHGRVADCLHKISFSSKHLMSLLNDVLDMSKIESGKLAVHHEEFDLPNLIDSIVSIMY 412

Query: 677 LYANEKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-TSN 734
                +      + +     +++ D   + QI LN+LSNA  FTP GG I +  +    N
Sbjct: 413 PQTESQGQHFSVALSGIEEEKLVGDPLRINQILLNLLSNARKFTPEGGSIKLEVSQKRKN 472

Query: 735 EEV--ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
             V     V DTG+G++    ++  KPF Q  +S   +  GTGLGL +   +V    G  
Sbjct: 473 GGVLMRFTVSDTGIGLSEAFQKRLFKPFEQADSSISQKYGGTGLGLAITHNLVTLMNGTI 532

Query: 793 YIFSTPAKGTLIEIIFPLY 811
            + S   +G+   +  PL 
Sbjct: 533 GVRSKEHEGSCFTVELPLA 551


>gi|159900627|ref|YP_001546874.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
            aurantiacus ATCC 23779]
 gi|159893666|gb|ABX06746.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
            aurantiacus ATCC 23779]
          Length = 3470

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 86/373 (23%), Positives = 170/373 (45%), Gaps = 26/373 (6%)

Query: 448  EIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
              E  +  +IL++ S+G+ +++ +   I+  N A   +   P  +++     V       
Sbjct: 3099 REEASKTAAILQSVSEGVMVLDHQTEKIILYNPAAEDVLRIPRSEVMHNSLQVVAAPRNE 3158

Query: 507  SVMNHYLTEIL-----SLDLRQTLEKITLGS---TKEEKLLSLRIIIKKLPFSS--CYSL 556
              ++     +L        ++       +         + ++          SS     +
Sbjct: 3159 EELHEEGRSLLLYAGLHEGIQVVQRSEGVHRSMIELPGQSIAANFAPVVGEESSRFGVVV 3218

Query: 557  TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
             + DI+                 +    K DF+A VSHE+RTPLT I GF +++     G
Sbjct: 3219 VLRDITR--------------EVEADRAKRDFVATVSHELRTPLTPIRGFVDLLLLGAVG 3264

Query: 617  PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
             L +P   E  N +  +   ++ +V DLL+I ++E+GK+ L+  P  +++ V + ++   
Sbjct: 3265 QLSDP-QREMLNTVKTNAMRMVGLVEDLLEIGRLEAGKIVLNTAPNQINQLVRDIVATWG 3323

Query: 677  LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
            L   +K + ++    + +P I  D + + Q+  N++SNAI +T +GG +II T    ++ 
Sbjct: 3324 LEIEKKNMTLKLELDDTLPLIEYDSKRIGQVLTNMVSNAIKYTYAGGDVIIRTFINEDKM 3383

Query: 737  VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
            + L V+DTGVG+T  + +   K F +  +  +    GTGLGL +AK+ ++ + G  ++ S
Sbjct: 3384 IQLDVKDTGVGLTAEQQKSMFKRFYRADSPLRDEVGGTGLGLSIAKSFIELHNGDMWVQS 3443

Query: 797  TPAKGTLIEIIFP 809
               +G+      P
Sbjct: 3444 VYGEGSTFSFSLP 3456


>gi|153007303|ref|YP_001381628.1| histidine kinase [Anaeromyxobacter sp. Fw109-5]
 gi|152030876|gb|ABS28644.1| histidine kinase [Anaeromyxobacter sp. Fw109-5]
          Length = 464

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 86/254 (33%), Positives = 138/254 (54%), Gaps = 2/254 (0%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E +++  +L  +    ++    KS+FLA +SHE+RTPLT++IG+SE++     GPL    
Sbjct: 198 ELQEKNRELEDSYAKLKELDRLKSNFLATMSHELRTPLTSVIGYSEMMLEGLGGPLTAE- 256

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             EY   I   G  +L ++  +LDISKIE+G++ L    V   + + +AI+ V   A +K
Sbjct: 257 QREYLGIIMEKGENLLQLITSILDISKIEAGRVRLVLSDVDATQIMRDAIATVLPLARKK 316

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
            + +    A  +PR+ AD   ++Q  +N+ SNA+ FTP+GG I +S      + + + V 
Sbjct: 317 GLKVACD-AGAMPRVQADRDKLRQCLVNLCSNAVKFTPAGGTIAVSAEALPGDRLAIHVA 375

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG+G+    L K    F Q+  S      G GLGL + K+ V+A+ G+  + S P  GT
Sbjct: 376 DTGIGIGEEHLGKVFDVFYQVDGSSTREYGGAGLGLAIVKSFVEAHGGEVGVRSIPGVGT 435

Query: 803 LIEIIFPLYDTSHP 816
              +I PL  +  P
Sbjct: 436 TFTVILPLRPSLVP 449


>gi|119900234|ref|YP_935447.1| putative hybrid sensor and regulator protein [Azoarcus sp. BH72]
 gi|119672647|emb|CAL96561.1| putative hybrid sensor and regulator protein [Azoarcus sp. BH72]
          Length = 1064

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 101/469 (21%), Positives = 184/469 (39%), Gaps = 28/469 (5%)

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
             +I     + +   A  +     +  ++  R  R     +A +  I+ +    L     
Sbjct: 190 DAEISQMRTMVSAFTALAVLVATLLVVLLATRLTRDVGTITAGVRRIEQDLGERLPAMTG 249

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476
                      +  +       +       ++     L + ++A  +   I + +  +L 
Sbjct: 250 ETGAIAHVVNTLAASLEAARRTERERAASALQRSEGILRAAIDAIDEAFIICDEQDRLLL 309

Query: 477 TNRAVSKLF---------GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
            N    +LF         G P E ILR                 +L + ++     T  +
Sbjct: 310 CNDRYRELFALTADLLVPGTPFERILRASVARGQFPEAVGREQAWLADAMARHQAGTEAR 369

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
            T       + L +   + +   +        D+++       L  A+  AE  +  KS 
Sbjct: 370 ETCI--ASGRWLRV---VDRRTPAGHIVGFRVDVTD-------LHEARAAAEAANQAKSL 417

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           F+A +SHEIRTP+  ++G +E++         +    ++A     S   +L I+ND+LD 
Sbjct: 418 FVANMSHEIRTPMNGVLGMTELLLTTEL----DDEQRDFAETARHSAQALLGILNDILDF 473

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQ 706
           SKI++GK+++      L   ++E  SL+ L A EK I        ++P R+  D   ++Q
Sbjct: 474 SKIDAGKLDIETIDFDLHGVLNEISSLLALRAEEKGIEFICRVEPSLPARLRGDPGRLRQ 533

Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSNE--EVILRVRDTGVGMTNYELEKAMKPFGQIP 764
           + LN++ NAI FT  G  ++        E   V   +RD+G+G+    L     PF Q  
Sbjct: 534 VLLNLVGNAIKFTDHGEVVVSVGVEDRGEPLRVRFEIRDSGIGIPAETLPALFSPFTQAE 593

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
            S   R  GTGLGL ++K +V+   G+  + S P  G+   +  P    
Sbjct: 594 GSTSRRFGGTGLGLSISKRLVELMGGEIGVRSQPGVGSTFWLALPFARQ 642


>gi|329768145|ref|ZP_08259650.1| hypothetical protein HMPREF0428_01347 [Gemella haemolysans M341]
 gi|328838056|gb|EGF87675.1| hypothetical protein HMPREF0428_01347 [Gemella haemolysans M341]
          Length = 641

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 79/402 (19%), Positives = 168/402 (41%), Gaps = 32/402 (7%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKM-EIEVMQLCSILEATSDGIAIINREGIILS 476
               +   E      +  +       ++ + E E  +L +I+E+  DGI   +  G I+ 
Sbjct: 253 VVGIDTDDEIGDLAKVFNQISKRIEEEQAVTETERRKLATIIESMMDGIITTDNNGKIIL 312

Query: 477 TNRAVSKLFGYPVEDI-LRKPFTVFLEQNTPSVMNHYLTE-------ILSLDLRQTLEKI 528
            N +   + G   ++I + K     L       +   L           +      L   
Sbjct: 313 INTSAEDMLGGRDDEIFIGKDVLKILNITEYESIEEILEAEDSLLVNASNDSDELLLRAE 372

Query: 529 TLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
                KE+K    ++          Y + ++D+++ ++++ +              + +F
Sbjct: 373 ISKIEKEDKEDLTQMS----TELEGYIIVLYDVTDQERQEKE--------------RREF 414

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
           ++ VSHE+RTPLT +  + E ++             ++ + I +    ++ +VN+L+ + 
Sbjct: 415 VSTVSHELRTPLTTMNSYIEALEEGVL--EDKELAPQFIDTIHKETTRMIRMVNELMQLG 472

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIA 708
           K++  + +   E + +++ + +      L   EK        +     +  D   + Q+ 
Sbjct: 473 KMDIKEEHYEKEFIDINKMLEQITDRFALTHPEKN--FIKHISKTPIFVEGDQDKLTQVF 530

Query: 709 LNILSNAIHFTPSGGQIIISTTHT-SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
            NI++NAI ++P+G  I I       +  V + ++D GVG+    ++K    F ++  S+
Sbjct: 531 DNIVNNAIKYSPNGKNITIRVRQNYHHNRVSISIKDEGVGIPLVHIDKIFNRFYRVDKSR 590

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           Q    GTGLGL LAK +V+A+ G+ +  S    G++I +  P
Sbjct: 591 QRSMGGTGLGLALAKTIVEAHKGRIWAQSREGYGSIIFVTLP 632


>gi|302749930|gb|ADL64107.1| multi-sensor signal transduction histidine kinase, WalK
           [Staphylococcus aureus subsp. aureus str. JKD6008]
          Length = 608

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 79/388 (20%), Positives = 171/388 (44%), Gaps = 29/388 (7%)

Query: 426 ENMPQNGIEPEDVDTRINKRKM--EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           + + +  +   ++  R+ + +   E E  +L S++   SDGI   +R G I   N    K
Sbjct: 235 DEIGELALAFNNLSKRVQEAQANTESEKRRLDSVITHMSDGIIATDRRGRIRIVNDMALK 294

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           + G   EDI+       L       +        S  L    E+  +        ++   
Sbjct: 295 MLGMAKEDIIGYYMLSVLSLEDEFKLEEIQENNDSFLLDLNEEEGLIAR------VNFST 348

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
           I+++  F + Y   +HD++E +Q + +              + +F+A VSHE+RTPLT++
Sbjct: 349 IVQETGFVTGYIAVLHDVTEQQQVERE--------------RREFVANVSHELRTPLTSM 394

Query: 604 IGFSEVIKNQRFGPLGNPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
             + E ++    G   +     ++ +        ++ +VNDLL +SK+++    ++ E +
Sbjct: 395 NSYIEALEE---GAWKDEELAPQFLSVTREETERMIRLVNDLLQLSKMDNESDQINKEII 451

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
             +  +++ I+  +   + K                 D   + Q+  N+++NA+ ++   
Sbjct: 452 DFNMFINKIIN--RHEMSTKDTTFIRDIPKKTIFTEFDPDKMTQVFDNVITNAMKYSRGD 509

Query: 723 GQIIISTTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
            ++            + +R++D G+G+   +++K    F ++  ++  +  GTGLGL ++
Sbjct: 510 KRVEFHVKQNPLYNRMTIRIKDNGIGIPINKVDKIFDRFYRVDKARTRKMGGTGLGLAIS 569

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           K +V+A+ G+ +  S   +GT I I  P
Sbjct: 570 KEIVEAHNGRIWANSVEGQGTSIFITLP 597


>gi|220919555|ref|YP_002494859.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219957409|gb|ACL67793.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 461

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 81/254 (31%), Positives = 134/254 (52%), Gaps = 2/254 (0%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E + +  KL  +    ++    KS+FLA +SHE+RTPLT++IG+SE++     GPL    
Sbjct: 197 ELQDKNQKLEDSYAKLKELDRLKSNFLATMSHELRTPLTSVIGYSEMMLEGLGGPLTAE- 255

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             EY   I   G  +L ++  +LDISKIE+G++ L    V   + + +A++ +   A +K
Sbjct: 256 QREYLGIIMEKGENLLQLITSILDISKIEAGRVRLVLSEVDAVQLMRDAVATLLPIARKK 315

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
            + +       +PRI AD   ++Q  +N+ SNA+ FTP GG I +S      E + + V 
Sbjct: 316 GLKVSCDTTP-LPRIHADRDKLRQCLVNLCSNAVKFTPPGGSITVSAEVLPAERLAIHVV 374

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D+G+G+    L K    F Q+  S      G GLGL + K+ V+A+ G+  + S    G+
Sbjct: 375 DSGIGIPEEHLGKVFDVFYQVDGSSTREYGGAGLGLAIVKSFVEAHGGEIRVRSAAGTGS 434

Query: 803 LIEIIFPLYDTSHP 816
           +  ++ P+     P
Sbjct: 435 VFTVLLPIRAAPAP 448


>gi|332991838|gb|AEF01893.1| aerobic respiration control sensor protein ArcB [Alteromonas sp.
           SN2]
          Length = 785

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 118/496 (23%), Positives = 207/496 (41%), Gaps = 31/496 (6%)

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
           +  +   V     +     S ++LT   +   +     L   L+  + +    +  +   
Sbjct: 46  RVSMGSAVQPDDFI-----SAVILTMLSAPWVLYFFSELIKQLENSRTNLKEVVSQLERL 100

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
           R +   +    + +  Q N E       I   K  Q         +E E  D    + + 
Sbjct: 101 REEDVFLNRELQTNIRQLNHE-------IEQRKLAQEEREALFKDLEREIQDKSEQEAQA 153

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
                 L SI++A+ D I   N EG     NR    + G   +++L    T   E++   
Sbjct: 154 RRLSTLLRSIIDASPDLIYYRNEEGRFAGCNRIAELMTGKTEQELLGLTPTDVYEEDLAR 213

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWK 565
            +     E+L  +   T E     +    +   ++ +       +         D++E K
Sbjct: 214 QIVASDHEVLETNASITEELWLRFADGRRRYFEMKRVPFFDKEGNRLGLLSFGRDMTERK 273

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           Q +N        A K S+ K+ F+A +SHE+RTPL  I+G S ++++       N     
Sbjct: 274 QAEN-------AAAKASTDKTRFIATISHELRTPLNGIVGLSRMLRDTEL----NEEQFS 322

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           + + I  S   + +I ND++D+ K++  K+ L  + VSL +   E  S+++L A +K++ 
Sbjct: 323 WVSTIYASAITLGNIFNDIIDLDKLDRDKVELSLKTVSLRDFTEELSSIIRLLAGDKQLE 382

Query: 686 IRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT----SNEEVILR 740
           ++T+    +PR +  D   ++QI  NIL NA+ FT  G  + +S   T        V   
Sbjct: 383 LKTTIKEPLPRLVEVDGTRLRQILWNILFNAVKFTQKG-HVSLSIEATKPENDVAFVTFV 441

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           + DTGVG+   E+EK    + Q+ +       GTG+GL + K MVD   G   + S   K
Sbjct: 442 IEDTGVGIPEEEIEKIFAMYYQVDHPDHQSATGTGIGLAICKQMVDLMKGNIKVTSVVGK 501

Query: 801 GTLIEIIFPLYDTSHP 816
           GT  EI  P+  +  P
Sbjct: 502 GTRFEIELPVEISKKP 517



 Score = 46.6 bits (109), Expect = 0.017,   Method: Composition-based stats.
 Identities = 12/104 (11%), Positives = 28/104 (26%), Gaps = 5/104 (4%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLW 150
            G     +       G    +++G+   DV +            ++L+   +   +  LW
Sbjct: 177 EGRFAGCNRIAELMTGKTEQELLGLTPTDVYEEDLARQIVASDHEVLETNASITEE--LW 234

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR 194
                      ++  +P + +     G   FG            
Sbjct: 235 LRFADGRRRYFEMKRVPFFDKEGNRLGLLSFG--RDMTERKQAE 276


>gi|322418520|ref|YP_004197743.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           M18]
 gi|320124907|gb|ADW12467.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           M18]
          Length = 519

 Score =  315 bits (806), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 90/518 (17%), Positives = 186/518 (35%), Gaps = 28/518 (5%)

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPI--PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIA 363
               +  A     + L     ++        +   G +   N     +T Y + +     
Sbjct: 10  TADQAREAAQRAKDQLFRLMAEQVRDYALVLLDPKGEIVSWNAGAERMTLYHADEV--RG 67

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
              S      ++      + + +  S  +      +   ++ +     A+          
Sbjct: 68  RHFSVFHPKEEIRSGAPERELAIAASLGS---VELQGWRLRKDGSRFWAV-ITLNALHGA 123

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
             E      I  ++ + R ++         L  + E   D I +++  G+I   N+    
Sbjct: 124 AGEEAGYVLILHDNTERRASEEATVKSRNMLERLFETAPDAIIVVDGGGVIRKVNQQAEV 183

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ--TLEKITLGSTKEEKLLSL 541
           +FGY  E+++ +   + + +        +L    +    +   +     G  K    + +
Sbjct: 184 IFGYMREELVGQRIELLIPKRFHKRHRQHLHNFFADPRARKMGIGLELYGRHKNGAEIPV 243

Query: 542 RIIIKKLPFSSC--YSLTMHDISEWKQEKN-------KLSHAKKIAEKESSHKSDFLARV 592
            I++  +           + DI+  KQ +         L +  +     +     F   V
Sbjct: 244 DIMLNPIEAQETTWVFAVIRDITVQKQGEAKILELNLALRNQLEQLAATNRELESFSYSV 303

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SH++R PL  IIGF + + N + GP  + + + Y   I  +   +  +++DLL  S++  
Sbjct: 304 SHDLRAPLRHIIGFVD-LLNTKAGPALDEKSLHYLEVISGAAQKMGLLIDDLLAFSRM-- 360

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712
           G+  +    V L   V E +  +Q     +   I    A  +P +L D   ++Q+ +N++
Sbjct: 361 GRSEMMRGWVDLGLLVREIVGDLQADLQGR--EIEWDIAP-LPVVLGDSAMLRQVLINLI 417

Query: 713 SNAIHFTPSGGQIIIST-THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
            NA+ FT +  +  I+        E  + VRD GVG       K    F ++        
Sbjct: 418 GNAVKFTRARPEAKIAIGAVDRENETDIFVRDNGVGFDEAYASKLFGLFQRLHA--NEEF 475

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           EGTG+GL + + +V  + G+ +   T   G       P
Sbjct: 476 EGTGVGLAIVQRIVFRHGGRVWAEGTIDNGACFWFALP 513



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/139 (14%), Positives = 38/139 (27%), Gaps = 8/139 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID---PNNHIGDLLKRQNTWYG 145
           +D  G +   +    +    +A ++ G           I    P   +        +   
Sbjct: 41  LDPKGEIVSWNAGAERMTLYHADEVRGRHFSVFHPKEEIRSGAPERELAIA-ASLGSVEL 99

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +      +G+  +  I L AL  +    E +G+    I+H N           +      
Sbjct: 100 QGWRLRKDGSRFWAVITLNAL--HGAAGEEAGY--VLILHDNTERRASEEATVKSRNMLE 155

Query: 206 HLHEIKKGHSSVEKEKYDI 224
            L E       V      I
Sbjct: 156 RLFETAPDAIIVVDGGGVI 174


>gi|217977833|ref|YP_002361980.1| PAS/PAC sensor signal transduction histidine kinase [Methylocella
           silvestris BL2]
 gi|217503209|gb|ACK50618.1| PAS/PAC sensor signal transduction histidine kinase [Methylocella
           silvestris BL2]
          Length = 494

 Score =  315 bits (806), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 111/455 (24%), Positives = 189/455 (41%), Gaps = 24/455 (5%)

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
                   +    +        D     A A     +      +     P   +      
Sbjct: 12  ARFIHAGAARARRLIESDRLEWDMGESPAPAHSGFARDRERGGM----RPSPSSRLTLAR 67

Query: 428 MPQNGIEPEDV-DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST--NRAVSKL 484
              +         +R+    +  E     ++ E+  D + + +R G +LS   NR    L
Sbjct: 68  AHLDAAMRRLRGQSRVAPAPLPAES--FAALHESVGDVVLLHDRTGAVLSIAGNR--QSL 123

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK------L 538
           FG P  D++ + F   +      +    + E    D   T+      S+ +         
Sbjct: 124 FGLPAADLMGRGFFEHVHVADRPIFLKAIGEASFSDAPITVALRLRASSLDRGDYAEPVF 183

Query: 539 LSLRIIIKK---LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
           L L +  ++               ++++    +++L             K  FLA VSHE
Sbjct: 184 LWLDMRARRCGKHSPERSAVAIFRNVTDAHWRQDELD---SAGTAADLSKDHFLANVSHE 240

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           +RTPL AIIGFSE++ +    P    +  EYA  I RSG  +L +VN +LD+SKI SG  
Sbjct: 241 LRTPLNAIIGFSEILGDADQAPRDPAKQREYAAIIHRSGQHLLSVVNSILDLSKIHSGSF 300

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715
           +L      +   V     +V+L A ++ I ++      +P I+ D R+ KQI +N+LSNA
Sbjct: 301 DLSPSHFGVAPLVEVCCDMVKLEAQDRHIELKRVCPEGLPEIVGDKRACKQIVINLLSNA 360

Query: 716 IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           + FTP+ G++ IS +      +++ V D+GVG+   +L +   PF Q   +     EGTG
Sbjct: 361 VKFTPAHGEVSISVSIEDE-TLLIAVADSGVGINEQDLARLGNPFFQARGALDRPFEGTG 419

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           LGL +   +V  + G   + S P +GT + +  P+
Sbjct: 420 LGLSIVSGLVGLHGGSIAVASEPDQGTCVLVRLPV 454


>gi|55821168|ref|YP_139610.1| sensor histidine kinase [Streptococcus thermophilus LMG 18311]
 gi|55737153|gb|AAV60795.1| sensor histidine kinase (homolog to HK02/MicB Spn & HK02 Sth & VicK
           Spy) [Streptococcus thermophilus LMG 18311]
          Length = 446

 Score =  315 bits (806), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 87/378 (23%), Positives = 158/378 (41%), Gaps = 35/378 (9%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           R+    +  E  +L S+L   SDG+   NR G I   N    +L     E   +      
Sbjct: 82  RLTHENLIQEKNRLSSVLSYMSDGVIATNRLGQITMINSTAQRLLNLDRETATQMSILDI 141

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SL 556
           L+   P   +  L         +T E         ++ ++LR+    +   S +      
Sbjct: 142 LDGENPYTYSELL--------SKTPEIHLSRRDANDEFVTLRVNFALIRKESGFISGLVA 193

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            +HD +E ++E+ +                 F++ VSHE+RTPLT++  + E +     G
Sbjct: 194 VLHDATEQEKEERERRL--------------FVSNVSHELRTPLTSVKSYLEAL---DDG 236

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV- 675
            L       +        N ++ ++ DLL +S+I++    L+ E  +    ++  ++   
Sbjct: 237 ALNEEIAPNFIKVSLDETNRMMRMITDLLALSRIDNKSTQLNVEMTNFTAFMTYILNRFG 296

Query: 676 ----QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
               Q     K   I   +  N   +  D   + Q+  NIL+NAI ++P GG+I +S   
Sbjct: 297 QIKSQETNPGKSYEIIRDYPVNSIWVEIDTDKMTQVIDNILNNAIKYSPDGGKITVSMKT 356

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
           T   ++I+ + D G+G+   +L      F ++  ++     GTGLGL +AK +V  + G 
Sbjct: 357 TDT-QLIVSISDQGLGIPKKDLPLIFDRFYRVDKARSRAQGGTGLGLSIAKEIVKQHNGF 415

Query: 792 FYIFSTPAKGTLIEIIFP 809
            +  S   KG+   I+ P
Sbjct: 416 IWAKSEYGKGSTFTIVLP 433


>gi|239637988|ref|ZP_04678949.1| alkaline phosphatase synthesis sensor protein PhoR [Staphylococcus
           warneri L37603]
 gi|239596551|gb|EEQ79087.1| alkaline phosphatase synthesis sensor protein PhoR [Staphylococcus
           warneri L37603]
          Length = 564

 Score =  315 bits (806), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 79/396 (19%), Positives = 169/396 (42%), Gaps = 29/396 (7%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEI--EVMQLCSILEATSDGIAIINREGIIL 475
                   +      +   ++  R+ K       +  +L + LE     + +I++ G I+
Sbjct: 189 VRVPESNVKETKALFVTTNELARRLQKLNNRQKIQSNRLKTTLENIPSSVLMIDKHGEIV 248

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
             N A  ++F  P + +  K +  F+      ++          +     +     +   
Sbjct: 249 VANSAYYEVFS-PEQSVENKSYIGFINDKIEKLIMESFR----TEKVIYDQIEVDINNVH 303

Query: 536 EKLLSLRIIIKKLPFS---SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
            K   +  +              + +HDI+  ++ +              + + +F+A V
Sbjct: 304 TKYFDVSCVPILSKSKKKLQGMVVVLHDITNLQKLE--------------NLRREFVANV 349

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHE++TP+T+I GF+E +               + N I +  N +  +V DLLD+S IE 
Sbjct: 350 SHELKTPITSIKGFAETLIEG--AKNDEESLNMFLNIILKESNRIESLVMDLLDLSHIE- 406

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712
            +  +    ++L E     I  +Q  A  K I I +    ++    A+   + Q+  N+L
Sbjct: 407 QQNEITTSYMNLSELAYTTIDNLQNQAQNKNITIESKIERDVI-FKANENKIAQVITNLL 465

Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           SNAI+++ +  ++I+S  +   + V L ++D G+G++  E +   + F ++  ++     
Sbjct: 466 SNAINYSTNDNKVIVSV-YREGKRVNLEIQDFGIGISAEEQKHIFERFYRVDKARSRDSG 524

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           GTGLGL + K +V+++ G+  + S   +G+  ++ F
Sbjct: 525 GTGLGLSITKHIVESHNGRISVISRLNEGSTFKVTF 560


>gi|209363989|ref|YP_001424551.2| two component system histidine kinase [Coxiella burnetii Dugway
           5J108-111]
 gi|207081922|gb|ABS77049.2| two component system histidine kinase [Coxiella burnetii Dugway
           5J108-111]
          Length = 683

 Score =  315 bits (806), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 102/516 (19%), Positives = 211/516 (40%), Gaps = 29/516 (5%)

Query: 321 LTPETVDKCPIPFFVYSHG--NLFYANPSFLLLTKYKSVDDIEIAG-GLSTLLDAPKLSD 377
           L     +     F++ S       Y +P+F  +               ++ ++   +   
Sbjct: 33  LFLNLAETSQDIFWIRSVDFYTHVYVSPAFENIFGISRQTLYANPNKWMNAVITEDRDRL 92

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
            + I    +            R+     +    +           +  + +   G+  + 
Sbjct: 93  RHLIMEWQVKNKKGAAYTVDYRI----IDAYGEMHWINETSYPVYEDDQCLGYAGVVKDV 148

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREG-IILSTNRAVSKLFGYPVEDILR-- 494
              ++  ++ +  V      +E  S    +    G   +  +    K++G   E + +  
Sbjct: 149 SSEKLRVKEFDNAVHYFRHFVERVSGVFWVKGSRGDKQIYISPTYEKIWGVSCESLYQNP 208

Query: 495 KPFTVFLEQNTP---SVMNHYLTEILSLDLR-QTLEKITLGSTKEEKLLSLRIIIKKLPF 550
           K +  ++         V  ++              E        + ++  ++     +  
Sbjct: 209 KSWIDYVLPEDISNGKVNVNFYETAADQRTPDSKYEFRFRIRRPDGEIRWIKDTYFPIME 268

Query: 551 SS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
           +     ++    D++     + +L  AK+ AE+ +  KSDFLA +SHE+RTPL AI+G S
Sbjct: 269 NGKLVGFAGIAEDVTNDALREKELWEAKEFAEQANRTKSDFLAMMSHELRTPLNAILGMS 328

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
           +++K        +       + I ++G  +L ++NDLLD +K+E+GK++   E + L E 
Sbjct: 329 QILKTHNL----SDEQQGQIDVISQTGQNLLALLNDLLDFAKLEAGKLSFTEETMDLHEL 384

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII 726
           V +    + L A++K I ++  +  NIP +++ D + ++Q+ +N+LSNA+ FT  G  + 
Sbjct: 385 VMKIKGDMLLLAHKKGIQLKFDYPENIPSKVMGDAKRIRQVLVNLLSNALKFTEKG-YVQ 443

Query: 727 ISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
           ++      +     +   V+DTG+GM   +L      F QI +  Q + +G GLGL + K
Sbjct: 444 LTANCLKKDHKKMTLCFTVKDTGIGMEKTKLSSIFNRFQQINSVYQRKYDGVGLGLSIVK 503

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFP--LYDTSHP 816
            +++   G   + S P  G+    I P  L   S+P
Sbjct: 504 ELLEKMGGTISVTSEPGVGSEFTCIIPFRLQADSNP 539


>gi|270313640|gb|ACZ73895.1| FixL [Azospirillum brasilense]
          Length = 508

 Score =  315 bits (806), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 96/503 (19%), Positives = 203/503 (40%), Gaps = 27/503 (5%)

Query: 321 LTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
                +D  P    +    G +   NP+   L  + + + I   G    +L  P   + +
Sbjct: 15  RFQAMLDTVPDGVVIIDAEGRIQTFNPACERLFGWTAAEVI---GHNVKMLMPPPYREEH 71

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
                  +R+    I    R  T       +  M     E   +   +    GI  +  +
Sbjct: 72  DGYLKRYHRTGERRIIGIGREVTGLRRDGTTFPMELSVGEACREAGGDGVYIGIIRDISE 131

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
            +  +  +     +L SILE   + I +I+  G+I S + A  +LFGY   ++  +  ++
Sbjct: 132 RKRAETALREREARLTSILETVPEAIIVISERGLIESFSPAAERLFGYSATEVSGRNVSM 191

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQT--LEKITLGSTKEEKLLSLRIIIK--KLPFSSCYS 555
            +        + Y+   L+   R+   + ++  G  ++  +  + + +   +L    C++
Sbjct: 192 LMPSPYREQHDRYMDHYLTTGERRIIGIGRVVSGLRRDGSVFPMELAVGEVRLAGHRCFT 251

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESS--HKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
             + D++E +  + +L   +      S         + ++HE+  PLTA+I +++ +K  
Sbjct: 252 GFIRDLTERQATEKRLQELQAELLHVSRVSAMGQMASTLAHELNQPLTAVINYAKAVKRL 311

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
              P G  +  E  +           I+  L +   IE G+     E  S+ + V EA +
Sbjct: 312 LDRPDGADKARETMDKATAQAARAGQIIRRLRNF--IEKGQTEHTAE--SIGKVVEEASA 367

Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG--QIIISTTH 731
           L  + A E+ + +R   + +   +L D   ++Q+ LN++ NAI         ++ ++T  
Sbjct: 368 LALVGAKERGVHVRLEMSGDERPMLIDKIQIQQVVLNLVRNAIEAMAESEIRELTVATGP 427

Query: 732 TSNEEV--ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
                    + VRDTG G+    L +  +PF         + +G GLGL + +++++A+ 
Sbjct: 428 DPESAALMRVTVRDTGPGLNETVLAQLFQPFVTT------KEKGMGLGLSICRSIIEAHG 481

Query: 790 GKFYIFSTPA-KGTLIEIIFPLY 811
           G+ ++   P  +G       P+ 
Sbjct: 482 GRLWLE--PGDRGATFAFTVPVA 502



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/352 (10%), Positives = 84/352 (23%), Gaps = 23/352 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY---- 144
           IDA G ++  +    +  G  A ++IG  +  +    + + ++       R         
Sbjct: 30  IDAEGRIQTFNPACERLFGWTAAEVIGHNVKMLMPPPYREEHDGYLKRYHRTGERRIIGI 89

Query: 145 -GKTTLWPIEGTNLYVPIDLA-ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
             + T    +GT    P++L+          +       GI+             +  + 
Sbjct: 90  GREVTGLRRDGTTF--PMELSVGEACREAGGDGV---YIGIIRDISERKRAETALREREA 144

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPP------HLRMKNKVSSLTEYYAHKDDVLKT 256
           + + + E       V  E+  I S               +  +  S+     +++   + 
Sbjct: 145 RLTSILETVPEAIIVISERGLIESFSPAAERLFGYSATEVSGRNVSMLMPSPYREQHDRY 204

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
             + L T E   +        +  +           +        +       +     +
Sbjct: 205 MDHYLTTGERRIIGIGRVVSGLRRDGSVFPMELAVGEVRLAGHRCFTGFIRDLTERQATE 264

Query: 317 EGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
           +        +        V     +     +            I  A  +  LLD P  +
Sbjct: 265 KRLQELQAEL------LHVSRVSAMGQMASTLAHELNQPLTAVINYAKAVKRLLDRPDGA 318

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
           D                     RL       +       I           +
Sbjct: 319 DKARETMDKATAQAARAGQIIRRLRNFIEKGQTEHTAESIGKVVEEASALAL 370


>gi|225387688|ref|ZP_03757452.1| hypothetical protein CLOSTASPAR_01458 [Clostridium asparagiforme
           DSM 15981]
 gi|225046210|gb|EEG56456.1| hypothetical protein CLOSTASPAR_01458 [Clostridium asparagiforme
           DSM 15981]
          Length = 810

 Score =  315 bits (806), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 114/536 (21%), Positives = 198/536 (36%), Gaps = 45/536 (8%)

Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPF---FVYSHGNLFYANPSFLLLTKYKSVD 358
              H             E      +    +      +  H  L +AN  +  L  +   +
Sbjct: 1   MTEHERGDRPQTGVTPAEYEYNTLMRLLGVSVSKHLLDEHFTLIWANEFYYELIGWPKDE 60

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
                     L       +   +   +L             L  I+    + + + F   
Sbjct: 61  YEAKFHNRPDLYYQTDPEEWQKLSETVLQALAAGQEGYRL-LSRIRRKNGDYVWVQFSAR 119

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL-EATSDGI--AIINREGI-- 473
                               D    +R+         S+  E+    +    I+ +G   
Sbjct: 120 FAEEYIDGYQVAYSTLTNVDDLVKMQRE--------QSVTYESLPGFVAKYRIDADGEEL 171

Query: 474 ---ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530
              +LS N    + FG    +  RK       +N    +     +   +   + L     
Sbjct: 172 YLALLSANSRFMEYFG----EAGRKNADSLYNRNLRENIEMLNGQRDRILAGEPLHFTMH 227

Query: 531 GSTKEEKLLSLRIIIKKLPFSSC---YSLTMHDIS---EWKQEKNKLSHAKKI------- 577
            ++++ + L L++    + +      Y +   DI+   E ++ + KL    +        
Sbjct: 228 VASRDGQALWLQVNATCVDWQEGSPVYLVIFIDITDVTELREMQRKLIAQTEALKDALSV 287

Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
           AE+ +  KSDFL+R+SHEIRTP+ AIIG + +            R  +    I  S   +
Sbjct: 288 AEQANRAKSDFLSRMSHEIRTPMNAIIGMTTIAA---AYIEDRKRVEDCLEKIGYSSKHL 344

Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697
           + ++ND+LD+SKI++GKM +  EP +L+  V    S++   A +K ++      + I  +
Sbjct: 345 MTLINDVLDMSKIDAGKMQISHEPFNLETIVESITSIIYPQAEDKGLIFNVPLVDLINTV 404

Query: 698 L-ADLRSVKQIALNILSNAIHFTPSGGQIIISTT--HTSNEEVILR--VRDTGVGMTNYE 752
           L  D   + QI LN+LSNA+ FTP GG + +           V L   V DTG+GM+   
Sbjct: 405 LIGDGLRLNQILLNLLSNAVKFTPKGGTVRLRIRQMWRRAGRVRLSFAVSDTGIGMSQDF 464

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           L     PF Q   +      GTGLG+P+ K +     G   + S P +GT   +  
Sbjct: 465 LSHIFDPFEQERVNAGQTYGGTGLGMPITKNLATLMGGTISVKSKPDQGTTFTVEL 520


>gi|118445114|ref|YP_879185.1| two-component sensor histidine kinase [Clostridium novyi NT]
 gi|118135570|gb|ABK62614.1| two-component sensor histidine kinase [Clostridium novyi NT]
          Length = 779

 Score =  315 bits (806), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 85/387 (21%), Positives = 166/387 (42%), Gaps = 13/387 (3%)

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
           +     +    +  +     +L +++ +T D I + + +   L  NRA          D 
Sbjct: 365 LSTSIYEKHKTRTALIESEKRLRTLINSTPDFICLKDGDCRWLEVNRATIDFLDLKDIDW 424

Query: 493 LRKPFTVFLEQNTPSVMNHYLT-----EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
             K     ++  + +     L      +IL+L+ R  +         +   ++L I    
Sbjct: 425 KNKTTAELIK--SRNTHKDRLEKYETFDILTLEKRSMINYQDEFLLDDGSKITLDIFKIP 482

Query: 548 LPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
           +  S+          HD++   + + +              ++ F A +SHE++TPL  I
Sbjct: 483 VFDSNGNPSGLVTIGHDLTPRIEAE-ENKKLLDETISYHQLRTKFFANISHELKTPLNLI 541

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +   + ++++         + +Y + I  +   ++ I+N+LLDI+KI+SG    HF+  +
Sbjct: 542 LSAIQFLQSKGGDDFLRTNFDKYGDVIKDNSYRMVRIINNLLDITKIDSGYFETHFDNYN 601

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
           + E V +       Y N K +            +  D   +++  LN+LSNAI FT  GG
Sbjct: 602 IVEVVEDICLFSSSYINSKNLQFVFDTDTEEKIVACDPHLIERTILNLLSNAIKFTKPGG 661

Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
           +I ++  +   + V + ++DTG+G++    E   + F QI  S     EG+G+GL L K+
Sbjct: 662 KITVNI-YDKGDFVDISIKDTGIGISKSHQEIIFERFFQIDKSLSRNQEGSGVGLSLVKS 720

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFPL 810
            VD + G   + S   +G+   I  P+
Sbjct: 721 FVDLHKGSIKLNSEIDRGSEFLITLPV 747


>gi|119716160|ref|YP_923125.1| PAS/PAC sensor signal transduction histidine kinase [Nocardioides
           sp. JS614]
 gi|119536821|gb|ABL81438.1| PAS/PAC sensor signal transduction histidine kinase [Nocardioides
           sp. JS614]
          Length = 920

 Score =  315 bits (806), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 112/648 (17%), Positives = 212/648 (32%), Gaps = 38/648 (5%)

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL--RMKNKVSSLT 244
            R   D     +RL ++      I            +I         +  R  + V    
Sbjct: 289 RRRLLDRLTSSERLFRRNFTESLIGMVLMRSGDTPLEIVDVNEAAARIVGRTGSPVGRDL 348

Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
                  + L+     +L  +      Q        ++        T       S +   
Sbjct: 349 AELLDTTEPLELIAAQMLAGDLDGWRAQTGLRDRRGSRVNVAVSLLTNDPEPTFSAQLQD 408

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIA 363
                      +  E LT  T+D       V    G +   N +   LT +   D++   
Sbjct: 409 VTAEYDARRRLEAAEKLTSATLDTTAAMILVTDLMGVVVRVNGATTTLTGF-DEDELVGV 467

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
                    P      A  P                   +  + +         +   ++
Sbjct: 468 AVWDLPFAPPGSDGYPAGLPDTPEGQVGRETDV------VTRSGQRRRIQWNTGYVHDDR 521

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
                    I     D  + +    +    L +   A +  +  I+ +G I   N     
Sbjct: 522 D----RPTHIVLTGTDLTMERMTAGLNRHLLEA---AITTALIGIDTQGRITVFNPGAVN 574

Query: 484 LFGYPVEDILRKPFTVFLEQNT----------PSVMNHYLTEILSLDLRQTLEKITLGST 533
           L GY  +D +  PF    +                    +  I S     T +   +G+ 
Sbjct: 575 LLGYDGQDTVGTPFVDLFDPEQLAERLSGATGEEAFARLVAGIDSGADTGTRDWTWIGAD 634

Query: 534 KEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESS-------H 584
                +S+ + +    F++   Y     D++E +  +  L  A +               
Sbjct: 635 GRRHTVSMSLSVAADTFAARVGYLCAGRDVTEARASQEMLVAALEKERLAVERLRQLDVA 694

Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
           KS+F++ VSHE+RTP+ +I+G++E +          P        I R+G  ++ + +DL
Sbjct: 695 KSEFVSTVSHELRTPVASIVGYTE-LLEDGTVVDPAPEQRPMLESIARNGQRLILLCDDL 753

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704
           L +S ++SG      + + L   +  A   ++     + + +          +L D   +
Sbjct: 754 LTLSGLDSGATAWQHDTLDLATLLPPAEEAIRPQLTGRDLELSMLAEPAPVLVLGDRVQL 813

Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764
           ++  +N+L NA+ FT  GG+I        + E  L + DTG+G+   E     + F +  
Sbjct: 814 ERALINLLGNAVKFTEDGGRIECRVGRQDD-EAWLSISDTGLGIPVEEQNGLFQRFFRSS 872

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
            +Q    +GTGLGL +  A V A+ G+  + S   +GT   +  PL  
Sbjct: 873 TAQAHAIQGTGLGLSIVAATVAAHGGRIDVDSAHLQGTTFTVRLPLAR 920



 Score = 80.8 bits (198), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 41/373 (10%), Positives = 97/373 (26%), Gaps = 20/373 (5%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNT--WYGKTTLWPI 152
           + +++E   + +G      +G  L ++      +P   I   +   +   W  +T L   
Sbjct: 326 IVDVNEAAARIVG-RTGSPVGRDLAELL--DTTEPLELIAAQMLAGDLDGWRAQTGLRDR 382

Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212
            G+   V + ++ L        FS       +     + D R   +  +K  S   +   
Sbjct: 383 RGS--RVNVAVSLL-TNDPEPTFS-----AQLQDVTAEYDARRRLEAAEKLTSATLDTTA 434

Query: 213 GHSSVEKEKYDIFSQQSPPPHLRMKNK---VSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
               V      +         L   ++   V                    L  + E  +
Sbjct: 435 AMILVTDLMGVVVRVNGATTTLTGFDEDELVGVAVWDLPFAPPGSDGYPAGLPDTPEGQV 494

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
             + D  T +  +   +   G + ++       +      ++            E     
Sbjct: 495 GRETDVVTRSGQRRRIQWNTGYVHDDRDRPTHIVLTGTDLTMERMTAGLNRHLLEAAITT 554

Query: 330 PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGG---LSTLLDAPKLSDNNAIKPVML 386
            +   + + G +   NP  + L  Y   D +            L               L
Sbjct: 555 AL-IGIDTQGRITVFNPGAVNLLGYDGQDTVGTPFVDLFDPEQLAERLSGATGEEAFARL 613

Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
                +      R  T          ++      A+ F   +       +  + R ++  
Sbjct: 614 VAGIDSGADTGTRDWTWIGADGRRHTVSMSLSVAADTFAARVGYLCAGRDVTEARASQEM 673

Query: 447 MEIEVMQLCSILE 459
           +   + +    +E
Sbjct: 674 LVAALEKERLAVE 686



 Score = 55.4 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 36/322 (11%), Positives = 72/322 (22%), Gaps = 32/322 (9%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL-------HIDPNNHIGDLLKRQN 141
           ID  G +   +      +G      +G    D+ D                   L+   +
Sbjct: 559 IDTQGRITVFNPGAVNLLGYDGQDTVGTPFVDLFDPEQLAERLSGATGEEAFARLVAGID 618

Query: 142 TWYG-KTTLWP-IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199
           +     T  W  I        + ++            G+   G           + +   
Sbjct: 619 SGADTGTRDWTWIGADGRRHTVSMSLSVAADTFAARVGYLCAG--RDVTEARASQEMLVA 676

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP---------------HLRMKNKVSSLT 244
             +K     E  +     + E     S +   P                +    +   + 
Sbjct: 677 ALEKERLAVERLRQLDVAKSEFVSTVSHELRTPVASIVGYTELLEDGTVVDPAPEQRPML 736

Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
           E  A     L      LLT            H               ++         LS
Sbjct: 737 ESIARNGQRLILLCDDLLTLSGLDSGATAWQHDTLDLATLLPPAEEAIRPQLTGRDLELS 796

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLF-----YANPSFLLLTKYKSVD 358
               P+      +   L    ++       F    G +        + ++L ++      
Sbjct: 797 MLAEPAPVLVLGDRVQLERALINLLGNAVKFTEDGGRIECRVGRQDDEAWLSISDTGLGI 856

Query: 359 DIEIAGGLSTLLDAPKLSDNNA 380
            +E   GL         +  +A
Sbjct: 857 PVEEQNGLFQRFFRSSTAQAHA 878


>gi|299538376|ref|ZP_07051659.1| sensor protein [Lysinibacillus fusiformis ZC1]
 gi|298725963|gb|EFI66555.1| sensor protein [Lysinibacillus fusiformis ZC1]
          Length = 591

 Score =  315 bits (806), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 80/363 (22%), Positives = 145/363 (39%), Gaps = 29/363 (7%)

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
            E  QL +IL + +D +   NR+  IL +N    +L      +   +       +  P  
Sbjct: 254 QENEQLSNILTSMTDAVITFNRDRTILLSNPPAERLMQKWFVNKGSQS-----AKPIPPE 308

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISEWKQE 567
           + H L  +L  + +   E        +    +  I               + D++E  + 
Sbjct: 309 LYHMLDHVLMFEDKLEEEIEM-----DGSYYTFTISPLYSGEMIRGAVAVIRDMTEQHRL 363

Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
           +                +SDF+A VSHE+RTP+  + G+SE + +  F         E  
Sbjct: 364 E--------------KLRSDFIANVSHELRTPIAMLQGYSEALMDDDFIQ-DQEERNEIT 408

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
             I      +  +V DLLD++++ESG M L+ + + ++             A EK + + 
Sbjct: 409 KIIYDESKRMGRLVTDLLDLARMESGHMALYKDELPINSTFERITQKFSQVAKEKHVRLL 468

Query: 688 TSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
                N+   I  D   ++Q+  N++ NA+  T  G  + +           + V+DTG 
Sbjct: 469 FESEFNDEAMINIDEDRIEQVLTNLVDNALRHTDEGS-VSVKVEQEPT-FAKISVQDTGH 526

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+   +L    + F +   ++     GTGLGL +A+ +V A+ G   + S   +GT    
Sbjct: 527 GIPQEDLPYVFERFYKADKARTRSKGGTGLGLAIARNIVKAHSGNIMVDSVLKEGTTFTF 586

Query: 807 IFP 809
             P
Sbjct: 587 YLP 589


>gi|296876106|ref|ZP_06900160.1| sensor histidine kinase [Streptococcus parasanguinis ATCC 15912]
 gi|296432817|gb|EFH18610.1| sensor histidine kinase [Streptococcus parasanguinis ATCC 15912]
          Length = 450

 Score =  315 bits (806), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 89/405 (21%), Positives = 169/405 (41%), Gaps = 36/405 (8%)

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDT-RINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
           +         PE         +  +  R+    +E E  +L SIL   +DG+   NR G 
Sbjct: 56  YSEVVDMQGSPELTDMTNSINDLSEVIRLTHENLEQETKRLTSILSYMTDGVLATNRRGQ 115

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
           I+  N   +K      +++L       L       +   +TE+  L +    E       
Sbjct: 116 IIMVNEMAAKQLNVNPDEVLNTSILDLLSLGDDYDLRSLITEVPELTIDSQDE------- 168

Query: 534 KEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
              + +SLR+    +   S +       +HD +E  +E+ +              +  F+
Sbjct: 169 -NGEYISLRVRFALIRRESGFISGLVAVLHDTTEQDKEERE--------------RRLFV 213

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
           + VSHE+RTPLT++  + E +     G L  P   ++        N ++ +V DLL +S+
Sbjct: 214 SNVSHELRTPLTSVKSYLEAL---DDGALSEPVAPDFVKVSLNETNRMMRMVTDLLSLSR 270

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLV-----QLYANEKRILIRTSFANNIPRILADLRSV 704
           I++    L  E  +    ++  ++       Q   + K+  +   +      +  D   +
Sbjct: 271 IDNETSQLDIELTNFTAFITFILNRFDKIKSQSQEDTKKYELIREYPITPIWVEIDTDKM 330

Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764
            Q+  NIL+NAI ++P GG+I +    T   ++I+ + D G+G+   +L +    F ++ 
Sbjct: 331 TQVIDNILNNAIKYSPDGGKIKVGMRTTD-AQLIISISDEGLGIPKKDLPRIFDRFYRVD 389

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            ++     GTGLGL +AK ++  + G  +  S   KG+   I+ P
Sbjct: 390 KARSRAQGGTGLGLAIAKEIIKQHKGFIWAKSEYGKGSTFTIVLP 434


>gi|187924222|ref|YP_001895864.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia phytofirmans
           PsJN]
 gi|187715416|gb|ACD16640.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia phytofirmans
           PsJN]
          Length = 657

 Score =  315 bits (806), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 91/531 (17%), Positives = 186/531 (35%), Gaps = 28/531 (5%)

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI--PFFVYSHGNLFYANPSFLLLT 352
           +   + E       P+ +      E      ++       F +   G +   N     LT
Sbjct: 5   DVPSAGENGKPAKVPAAARSRASVEIDYWALLEAIEDYAIFLLDPSGRIVSCNGGGYKLT 64

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
            Y   + +      S       ++ +     +                   + +      
Sbjct: 65  GYSEQEIVGE--HFSRFYTEEAVARDWPAYELQQASLTGR---FEDTGWRKRKDG-TIFW 118

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINRE 471
              +     +          I  +    R     +     +   +++   D  I +++ +
Sbjct: 119 SNVVITSMRDDAGILTGFAKITRDLSAQREYVEALRQSEERFRLLVDCVKDYAIFMLDPQ 178

Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
           G ++S N   +++ GY  E+I+ + F+ F      +       E+        +E     
Sbjct: 179 GYVVSWNSGAARIKGYTREEIVGRHFSTFYVPEEAAAGKPA-RELAIARQLGHVEDEGWR 237

Query: 532 STKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
             K+       ++I  +         ++    D++E +Q +      +++          
Sbjct: 238 VRKDGTTFWANVVITAVHDESNRLRGFAKVTRDLTERRQREELERSGERM--------RQ 289

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           FLA ++HE+R PL  +     V++ +        R  +    IDR    +  +V+DLLD+
Sbjct: 290 FLATLAHELRNPLAPVRNAIGVMQLETGVSPTLARSRDL---IDRQVTHLTRLVDDLLDV 346

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707
            +I S K+ L    V L E +  AI   + + +     +     +    +  D+  + Q+
Sbjct: 347 GRIMSNKVELRLGRVDLAEVMGRAIEAARPFTDAHEQRVVQHMPDEPVIVRGDMTRLVQV 406

Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
             N+L NA  F+P G  I ++         +L VRD G G+    L++  + F Q  + Q
Sbjct: 407 LQNLLHNAAKFSPVGSAIEVAARI-DYHMAVLEVRDAGCGIPVRSLDRIFELFAQEKDGQ 465

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFPLYDTSHPH 817
                G G+GL L K++V+ + G     S  P  G+   +  PL   + P 
Sbjct: 466 NAGEGGLGIGLTLCKSLVELHGGSIIASSEGPGCGSTFTLSLPLA-AALPE 515



 Score = 64.3 bits (155), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 25/266 (9%), Positives = 69/266 (25%), Gaps = 11/266 (4%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ--NTW 143
            + +D  GY+   +    +  G    +++G                   +L   +     
Sbjct: 172 IFMLDPQGYVVSWNSGAARIKGYTREEIVGRHFSTFYVPEEAAAGKPARELAIARQLGHV 231

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK- 202
             +      +GT  +  + + A  ++  +    GF    +            L +  ++ 
Sbjct: 232 EDEGWRVRKDGTTFWANVVITA--VHDESNRLRGFAK--VTRDLTERRQREELERSGERM 287

Query: 203 ---KFSHLHEIKKGHSSVEKEKYDI-FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
                +  HE++   + V      +       P   R ++ +     +     D L    
Sbjct: 288 RQFLATLAHELRNPLAPVRNAIGVMQLETGVSPTLARSRDLIDRQVTHLTRLVDDLLDVG 347

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
             +    E  L   +    +       + +    +    +            ++      
Sbjct: 348 RIMSNKVELRLGRVDLAEVMGRAIEAARPFTDAHEQRVVQHMPDEPVIVRGDMTRLVQVL 407

Query: 319 ENLTPETVDKCPIPFFVYSHGNLFYA 344
           +NL        P+   +     + Y 
Sbjct: 408 QNLLHNAAKFSPVGSAIEVAARIDYH 433



 Score = 61.2 bits (147), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 33/347 (9%), Positives = 89/347 (25%), Gaps = 18/347 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + +D  G +   +    K  G    +++G           +  +    +L +   T   
Sbjct: 44  IFLLDPSGRIVSCNGGGYKLTGYSEQEIVGEHFSRFYTEEAVARDWPAYELQQASLTGRF 103

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           + T W           ++    +       +GF    I        +     ++ +++F 
Sbjct: 104 EDTGWRKRKDGTIFWSNVVITSMRDDAGILTGFAK--ITRDLSAQREYVEALRQSEERFR 161

Query: 206 HLHEIKKGHSS--VEKEKYDIFSQQSPPPHLRMKNKVSS---LTEYYAHKDDVLKTEKYP 260
            L +  K ++   ++ + Y +              +       + +Y  ++         
Sbjct: 162 LLVDCVKDYAIFMLDPQGYVVSWNSGAARIKGYTREEIVGRHFSTFYVPEEAAAGKPARE 221

Query: 261 LLTSEESSLPEQEDFH-TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF---- 315
           L  + +    E E +    +   +        + + S     +       +         
Sbjct: 222 LAIARQLGHVEDEGWRVRKDGTTFWANVVITAVHDESNRLRGFAKVTRDLTERRQREELE 281

Query: 316 ---DEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
              +           +   P     +        + +  T  +S D I+      T L  
Sbjct: 282 RSGERMRQFLATLAHELRNPLAPVRNAIGVMQLETGVSPTLARSRDLIDRQVTHLTRLVD 341

Query: 373 PKLSDNNAIK---PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
             L     +     + L R D   +   A      +   +   +   
Sbjct: 342 DLLDVGRIMSNKVELRLGRVDLAEVMGRAIEAARPFTDAHEQRVVQH 388


>gi|209883640|ref|YP_002287497.1| PAS/PAC sensor signal transduction histidine kinase [Oligotropha
           carboxidovorans OM5]
 gi|209871836|gb|ACI91632.1| PAS/PAC sensor signal transduction histidine kinase [Oligotropha
           carboxidovorans OM5]
          Length = 816

 Score =  315 bits (806), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 128/712 (17%), Positives = 240/712 (33%), Gaps = 45/712 (6%)

Query: 121 VSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN----REFS 176
           ++    + P   +              +      T+    I+     +  +     RE S
Sbjct: 128 LAFGTWLHPEQALAMDHAVDGLRERGESFLLTMATSNGRAIEAMGRAVGGQAIVRIRELS 187

Query: 177 GFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM 236
           G R   +    +   D       L    + +        +    +Y   +          
Sbjct: 188 GVR-LELAETTQRHRDLLEETDALRAFAAAIPLPLWALRTDGTLRYANAAYAQAAEAENP 246

Query: 237 KNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS 296
            + ++   E    +D     +      +  + LP       I   + T   +   + +  
Sbjct: 247 ADAIARSVELLDSEDRTAMRDALADGKAYRARLPV-----AIGGERRTFDVFAFNIGD-- 299

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYK 355
                 +      +         +     +D+      V+     L + N S+  L    
Sbjct: 300 GSVGMAVDASETVAFKDALTHMASAHRRMLDQLSSGVAVFDADRRLAFYNDSYRRLWDLD 359

Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA---RLHTIQWNRENSLA 412
           S                    D++ ++ +   R         A   +LH      E +  
Sbjct: 360 SA------------FLDSSPDDSSVLEKLRAMRKIPEQPDFRAWKAKLHEAYRAVEPAKD 407

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL----CSILEATSDGIAII 468
             ++P  +A          G      D      K++ +   L       L+  ++ +A+ 
Sbjct: 408 TWYLPDGRAISIVTTPNPEGGVTYLFDDVTEGLKLQRQHDGLLRVQRETLDNLAEAVAVF 467

Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL-TEILSLDLRQTLEK 527
              G     N   ++++    E + ++P    +EQ    +       + +   +     +
Sbjct: 468 GGNGRARLFNPPFARMWKLSPEALEQQPHIETIEQWCRPLFEEAATWQAMRAAITGIDNR 527

Query: 528 I---TLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
                    K+  +L    +           LT  D+++    +  L       E     
Sbjct: 528 EPLQLRLERKDGSVLDCTTMPLP---DGATMLTFQDVTDTVNVERALRERNDALEAADQM 584

Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
           K DF+  VS+E+R+PLT IIGF+  + +   GP+   +  EY  YI  S N +L I+N++
Sbjct: 585 KVDFVHHVSYELRSPLTTIIGFAHFLSDPATGPMTV-KQSEYLGYITTSTNALLAIINNI 643

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704
           LD++ I +G M L   PV L + V EA + +Q       I +      ++   +AD R +
Sbjct: 644 LDLATINAGAMTLDLGPVDLRKTVEEATAGLQDRLVHDNIRLAVEIDPSVTGFVADERRM 703

Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG-QI 763
            QI  N+L+NAI F+P  G I  S     N  V   V D G G+     ++    F  + 
Sbjct: 704 VQIFYNLLANAIGFSPPNGTIRFS-AWRENGAVCCAVSDAGPGIPPEMRDRMFDWFESRA 762

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
             S+     G GLGL L ++ V+ + G   + S   +GT +   FP   T H
Sbjct: 763 NGSRHR---GAGLGLSLVRSFVELHGGTVRVDSAVDQGTTVTCEFPADQTFH 811



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/400 (10%), Positives = 90/400 (22%), Gaps = 34/400 (8%)

Query: 68  LDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI 127
           L+  +          +   W +   G L+  +    +            R  ++ D    
Sbjct: 204 LEETDALRAFAAAIPLP-LWALRTDGTLRYANAAYAQAAEAENPADAIARSVELLDSED- 261

Query: 128 DPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187
                + D L     +       P+         D+ A  I   +         G+    
Sbjct: 262 --RTAMRDALADGKAYR---ARLPVAIGGERRTFDVFAFNIGDGS--------VGMAVDA 308

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEK---------YDIFSQQSPPPHLRMKN 238
                 +     +      + +      +V             Y               +
Sbjct: 309 SETVAFKDALTHMASAHRRMLDQLSSGVAVFDADRRLAFYNDSYRRLWDLDSAFLDSSPD 368

Query: 239 KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKK-QYFGTLQNNSK 297
             S L +  A +    + +          +    E           +      T      
Sbjct: 369 DSSVLEKLRAMRKIPEQPDFRAWKAKLHEAYRAVEPAKDTWYLPDGRAISIVTTPNPEGG 428

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKS 356
            ++ +        L    D    +  ET+D       V+   G     NP F  + K   
Sbjct: 429 VTYLFDDVTEGLKLQRQHDGLLRVQRETLDNLAEAVAVFGGNGRARLFNPPFARMWKLSP 488

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
            + +E    + T+    +     A     +  +             ++    + L  T +
Sbjct: 489 -EALEQQPHIETIEQWCRPLFEEAATWQAMRAAITGIDNREPLQLRLERKDGSVLDCTTM 547

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
           P                  +  DT   +R +      L +
Sbjct: 548 PLPDGA-------TMLTFQDVTDTVNVERALRERNDALEA 580


>gi|90420581|ref|ZP_01228488.1| putative sensor histidine kinase [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90335309|gb|EAS49062.1| putative sensor histidine kinase [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 809

 Score =  315 bits (806), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 140/767 (18%), Positives = 275/767 (35%), Gaps = 53/767 (6%)

Query: 88  NIDAHGYLKEISEELPKTI---GNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144
             +A      ++    + +   G  A +++G         +        GD +       
Sbjct: 49  RAEAEARTMLLTAGEERLLVYSGPGAPEILGALPGPAGAPVEEKRFLSFGDWMAADVALR 108

Query: 145 GKTTL--WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
            +T +     +     + IDL    +   + +  G  G  +V    ++       +    
Sbjct: 109 LQTAITALRHDAEPFSIEIDLPHGRLIEASGKTIG--GLAVVRFVALEGLRERAREAEIA 166

Query: 203 KFSHLH---------EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253
               L                  +      +    +         + +   E        
Sbjct: 167 SADALAMIETMQNLFNAAPIPVWLRDRNGRLGWVNNAYAASVDAKEAADTLERQVEFLSE 226

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
                     SE++   ++         +            ++  +   +       +  
Sbjct: 227 QDRLTIAARLSEQAVFSDKLSTVVAADRRNFAVVEATGPLGSAGLA---IDVSETEQVRM 283

Query: 314 YFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
              +  N   ET+D+       +     L Y N +F  L    +   +E       LLD 
Sbjct: 284 ELRQTINSQSETLDQLTTAVARFDDKTRLTYHNAAFQRLFDLTN-SYLESEPDHLALLDH 342

Query: 373 PKLSDNNAIKPVMLY-RSDRTCIAASARLHTIQ-WNRENSLAMTFIPFEKANQFPENMPQ 430
            +      ++ +      D+   A  A   T   W+  ++  +  I   +          
Sbjct: 343 LRTRGILPVEKLFRSEIQDQDLAAYRATEPTETMWHLADARTLRVIATPQPQG-----GA 397

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490
             I  +  +    + +++  V      ++  S+ +A+   +G +  +N + ++LFG   +
Sbjct: 398 TWIFEDITEKLDLESQVKATVQLQRETIDYLSEAVAVFGSDGRLRLSNPSFAELFGLKPD 457

Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE------------KITLGSTKEEKL 538
            +L +P    L       +   ++   +      +               T   T+  ++
Sbjct: 458 YLLSRPRIHTLSDLASVAIRRTISSADTDGTASAVGGWPLFCQSVTAFDETRRDTETGEM 517

Query: 539 L-----SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
           +     ++   I  LP      LT  DIS+ +Q +  L    +  E+ +  K+DF+  V+
Sbjct: 518 ILSSGRTIAFAIVPLPNGQ-TMLTFSDISDARQAERMLREKNEALEQANQIKNDFVQHVN 576

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           +E+R+PLT IIGFS ++++   GPL N R  EY +YI  S + +L IVND+LD++ +++G
Sbjct: 577 YELRSPLTNIIGFSALLRSTETGPL-NERQSEYLDYIAVSTSSLLTIVNDILDLATVDAG 635

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713
            M L    V +   V  A   ++    E  + +R   A      +AD   + QI  N+LS
Sbjct: 636 IMELDLSEVDIVSTVEHAADGIRERLEEAEVTLRIDLAKAGETFMADSHRLTQILFNLLS 695

Query: 714 NAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
           NA +F P+G  + +         +   V D G G+   ++++  + F    N    R  G
Sbjct: 696 NAANFAPAGTAVDV-VATRGPRAISFAVTDRGPGIPADQIDRVFERFE--SNPAGGRHSG 752

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP--HD 818
            GLGL + K+ V+ + G   I S P +GT +   FPL D + P  HD
Sbjct: 753 AGLGLSIVKSFVELHRGTICIQSAPDEGTTVICDFPL-DPAAPLRHD 798



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 54/408 (13%), Positives = 111/408 (27%), Gaps = 52/408 (12%)

Query: 76  FDPIPRTVRFTWNIDAHGYLKEISEELPKTIG-NYAFKMIGMRLCDVSDILHIDPNNHIG 134
           F+  P      W  D +G L  ++     ++    A   +  ++  +S+   +     I 
Sbjct: 181 FNAAPIP---VWLRDRNGRLGWVNNAYAASVDAKEAADTLERQVEFLSEQDRLT----IA 233

Query: 135 DLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR 194
             L  Q  +  K +         +  ++    P+        G  G  I          R
Sbjct: 234 ARLSEQAVFSDKLSTVVAADRRNFAVVEATG-PL--------GSAGLAI--DVSETEQVR 282

Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL--RMKNKVSSLTEYYAHKDD 252
              ++     S   +      +   +K  +    +    L     + + S  ++ A  D 
Sbjct: 283 MELRQTINSQSETLDQLTTAVARFDDKTRLTYHNAAFQRLFDLTNSYLESEPDHLALLDH 342

Query: 253 VLKTEKYP------------LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF 300
           +      P             L +  ++ P +  +H  +           T Q     ++
Sbjct: 343 LRTRGILPVEKLFRSEIQDQDLAAYRATEPTETMWHLADARTLR---VIATPQPQGGATW 399

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDD 359
            +        L +       L  ET+D       V+ S G L  +NPSF  L   K    
Sbjct: 400 IFEDITEKLDLESQVKATVQLQRETIDYLSEAVAVFGSDGRLRLSNPSFAELFGLKPDYL 459

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA---------RLHTIQWNRENS 410
           +        +     L+     + +    +D T  A                 + + E  
Sbjct: 460 LSRP----RIHTLSDLASVAIRRTISSADTDGTASAVGGWPLFCQSVTAFDETRRDTETG 515

Query: 411 LAMTFIPFEKANQFPENMPQNGIEP--EDVDTRINKRKMEIEVMQLCS 456
             +       A           +    +  D R  +R +  +   L  
Sbjct: 516 EMILSSGRTIAFAIVPLPNGQTMLTFSDISDARQAERMLREKNEALEQ 563


>gi|70728487|ref|YP_258236.1| sensory box histidine kinase/response regulator [Pseudomonas
           fluorescens Pf-5]
 gi|68342786|gb|AAY90392.1| sensory box histidine kinase/response regulator [Pseudomonas
           fluorescens Pf-5]
          Length = 1200

 Score =  315 bits (806), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 104/549 (18%), Positives = 217/549 (39%), Gaps = 21/549 (3%)

Query: 272 QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI 331
            ED    +L Q   +      ++  +               A ++E   L         I
Sbjct: 403 PEDRRLSSLKQMAGEVLVLPARHTLESFIRRNYPDIRLRSVASYEEARALVSNGEAMATI 462

Query: 332 PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD----APKLSDNNAIKPVMLY 387
              V + G           +    S D+  +      LL     A +      +  + L 
Sbjct: 463 QSEVQALGPAETGVMVGRSVEGTWSADEFSVRKDQPELLSILNKALEALPVAELSALRLK 522

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
               T +   A      W R  +     I              + ++ +     + ++++
Sbjct: 523 WLGATPVPVPA------WQRVPNWVYWAIATALLFGLISLAWNSRLKRQIQQRLLAEQRL 576

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF--LEQNT 505
             +++   ++L+   + I + + +G +++ N++  +  G  +  I  +  T    L   T
Sbjct: 577 NDQLVFKRALLDGIPNPIFVRDLQGRLMTCNKSYEQQLGTSLAQIQGRQLTELDILPPAT 636

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISEW 564
              ++    ++L+       ++          +    +                 DI+E 
Sbjct: 637 AQQLHGEFMQLLASGESVFADRQVESRDGPIDVYQWAVPFYSAEGQLQGLLGGWIDITER 696

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           K+ +N+L  A++ A++ ++ K+ FL+ +SHEIRTP+TAI+G  E    +    L    + 
Sbjct: 697 KRLENQLVEARQAADQANAAKTAFLSTMSHEIRTPMTAILGLLE--LEKEQARLRGVPFS 754

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           E      +S   ++ ++ D LD++KIE+G M+L  +  +L         L ++ A  + +
Sbjct: 755 EALRVAYQSAQELIGLMGDSLDLAKIEAGYMHLVPQVTALKPFFESIRQLFEVTARNQGV 814

Query: 685 LIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VIL 739
            ++  F+     R L D   ++Q+  N+LSNA+ FT  G ++ ++     +E     + +
Sbjct: 815 QLQLVFSERAKGRYLFDPARLRQVVHNLLSNALKFTAQG-EVRMTVECQPDESGLECLRI 873

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V DTG G+++ +  K   PF Q          GTGLGL + + +V+   G+ ++ S P 
Sbjct: 874 SVADTGRGISSEQQAKLFTPFVQADAMTSSAYGGTGLGLSICRQLVELMGGRIHLLSEPG 933

Query: 800 KGTLIEIIF 808
            GT++ +  
Sbjct: 934 VGTVVSLEL 942



 Score = 45.4 bits (106), Expect = 0.038,   Method: Composition-based stats.
 Identities = 29/243 (11%), Positives = 59/243 (24%), Gaps = 14/243 (5%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLC--DVSDILHIDP-NNHIGDLLKRQNTWYGK 146
           D  G L   ++   + +G    ++ G +L   D+         +     LL    + +  
Sbjct: 598 DLQGRLMTCNKSYEQQLGTSLAQIQGRQLTELDILPPATAQQLHGEFMQLLASGESVFAD 657

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
             +   +G    + +   A+P YS   +  G  G  I                  +    
Sbjct: 658 RQVESRDGP---IDVYQWAVPFYSAEGQLQGLLGGWI--DITERKRLENQLVEARQAADQ 712

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
            +  K    S    +       +    L ++ + + L               Y       
Sbjct: 713 ANAAKTAFLSTMSHEIRT-PMTAILGLLELEKEQARLRGV---PFSEALRVAYQSAQELI 768

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQN--NSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
             + +  D   I             L+    S      ++ RN                 
Sbjct: 769 GLMGDSLDLAKIEAGYMHLVPQVTALKPFFESIRQLFEVTARNQGVQLQLVFSERAKGRY 828

Query: 325 TVD 327
             D
Sbjct: 829 LFD 831


>gi|163853824|ref|YP_001641867.1| PAS sensor protein [Methylobacterium extorquens PA1]
 gi|163665429|gb|ABY32796.1| PAS sensor protein [Methylobacterium extorquens PA1]
          Length = 693

 Score =  315 bits (806), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 95/408 (23%), Positives = 179/408 (43%), Gaps = 20/408 (4%)

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
             +  A        + +  E +       E +  R+   ++     +   ++EAT++ + 
Sbjct: 2   GLSIAAAMLALILVSLRRREPVVPESDMTEALQDRL--WQIAESEERYRVLVEATTEAVV 59

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
             + +G I   +   + L G    +++           +P V+    +E  +  +R   E
Sbjct: 60  QRDGQGRITFASAGFAALLGMKPLELIGSTL-------SPQVIERGASEQRADGVRVVEE 112

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
           ++            + + +        +     D++   +    L  AK  AE  +  KS
Sbjct: 113 RLVPVDGLPRWFSFIEMPVSGSVDGPNWLRAGQDVTARVEAARVLDEAKSRAEAANVAKS 172

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
            FLA VSHE+RTPL  I+G ++++ + R     +P    Y      SG  +L +V+ +LD
Sbjct: 173 RFLATVSHELRTPLNGILGMADLLLDTRL----DPEQRTYVEAFRTSGKALLGLVDGILD 228

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVK 705
            S+IE+G+++L  EP  +   V   + L+   A +K + I    A+++  +   D   V+
Sbjct: 229 FSRIEAGRLDLAAEPFDVAALVEGVVELLAPRAQDKGLEIALDIADDLAALRVGDADRVR 288

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILRVRDTGVGMTNYELEKAMKPFGQ 762
           QI +N+  NAI FT +GG + +S   +   +   ++L V DTG G+    +    + F Q
Sbjct: 289 QILVNLAGNAIKFTQAGG-VGVSLARSGEGQGEGLVLTVEDTGPGIPEERIPILFEEFEQ 347

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             +S     EGTGLGL + + +V+   G     ST  +G+   ++ PL
Sbjct: 348 GDDSAS--HEGTGLGLAITRRLVERMNGTIEARSTVGRGSTFRVVLPL 393



 Score = 40.8 bits (94), Expect = 0.96,   Method: Composition-based stats.
 Identities = 21/234 (8%), Positives = 49/234 (20%), Gaps = 17/234 (7%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D  G +   S      +G    ++IG  L        I+                 +  L
Sbjct: 62  DGQGRITFASAGFAALLGMKPLELIGSTLS----PQVIERGASEQRA---DGVRVVEERL 114

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
            P++G  L        +P+   +    G              +   +      +    + 
Sbjct: 115 VPVDG--LPRWFSFIEMPV---SGSVDGPNWLRAGQDVTARVEAARVLDEAKSRAEAANV 169

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
            K    +    +       +P   +     +   T     +   ++  +           
Sbjct: 170 AKSRFLATVSHELR-----TPLNGILGMADLLLDTRLDPEQRTYVEAFRTSGKALLGLVD 224

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
              +             + F                     L    D  ++L  
Sbjct: 225 GILDFSRIEAGRLDLAAEPFDVAALVEGVVELLAPRAQDKGLEIALDIADDLAA 278


>gi|73539168|ref|YP_299535.1| PAS [Ralstonia eutropha JMP134]
 gi|72122505|gb|AAZ64691.1| PAS [Ralstonia eutropha JMP134]
          Length = 1060

 Score =  315 bits (806), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 122/735 (16%), Positives = 243/735 (33%), Gaps = 64/735 (8%)

Query: 100 EELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYV 159
             + + IG             + +   ID    I                       L  
Sbjct: 39  HAVTRMIGMLREDGETRLRTIIENPYQIDLARRIAAA---------------PGDQALRA 83

Query: 160 PIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEK 219
             +    P++       GF G+ ++   RV     A  +    K      + +  +  + 
Sbjct: 84  EYEAWITPVFRS----RGFEGYSLISPQRVIVA--ASSRAYVGKPVSTAVVIEALARAQH 137

Query: 220 EKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTIN 279
             Y        P  +            +      + T + P+     + L  + D     
Sbjct: 138 ADYAATRPNRSPMPILTAEGEQPPGTLFQQVCARIGTPEAPI-----AFLCLRTDPQDRL 192

Query: 280 LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG 339
                      + +    ++   L     P   A     +          P   +     
Sbjct: 193 FEILRVGWSGKSGKAYVIDAAGRLLSPGLPGDRALQPSAKPRVSA-----PFGLWAQVPT 247

Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399
                 PS       +  +    A  +       ++ D+                  +A 
Sbjct: 248 RPRGGGPSVPADGNGQLTEL--AAALIDARDGETRVFDHYLDYRGRRVIGVAHWFPDTAM 305

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459
              ++ + + +   +F    +A      +    I         ++R+M     +  +  +
Sbjct: 306 GVIVELDTDEAYR-SFHLARQAIIALTALAICLILALTALHWRSRREMRQNAERWQAFRK 364

Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY-LTEILS 518
               G+A ++  G +   N    +  G P+ D+L +     L     + +      ++L 
Sbjct: 365 NVPAGLAYMSPGGRVDMANDIYCEFAGLPLHDLLGRNAWTALPDRRVAGICERGHADVLR 424

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKN------ 569
                  E         +++  +     +    +        + DISE ++ +       
Sbjct: 425 TGQTHVDEHTLNVRAHGQRVYRVARFPVRSRHDAVIMGVGTVVTDISEQERTRQALENLA 484

Query: 570 ------------KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
                       +L  A++ AE  +  KS FLA +SHEIRTPL  I G + +      G 
Sbjct: 485 STLEWKVAERTRELMEARESAEAAARAKSQFLANMSHEIRTPLNGISGMTHL----AIGE 540

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
             + R  +Y   I+ S   +  IVND+LD SK+E+G + +      L   +   +SL + 
Sbjct: 541 PDSGRQGQYLARIEESCQHLQRIVNDILDFSKMEAGMLAVDAASFPLARLLDHVLSLFRE 600

Query: 678 YANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNE 735
              +K ++++      +P  ++ D + + QI +N+L NA+ FT +G  ++ +   +  ++
Sbjct: 601 QVRKKGLVLQMEVDPALPLHVIGDSQRIGQILINLLGNALKFTDAGEIRLRVRACNADDD 660

Query: 736 EV--ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
            V     V DTG+G+    L     PF Q  +S   R EGTGLGL ++K + +   G+  
Sbjct: 661 TVAVRFEVSDTGIGIAEDALLVLFSPFHQADSSAARRFEGTGLGLAISKRLAELMGGRIT 720

Query: 794 IFSTPAKGTLIEIIF 808
           + S    G+L  +  
Sbjct: 721 VQSQAGVGSLFTLEI 735


>gi|189467535|ref|ZP_03016320.1| hypothetical protein BACINT_03925 [Bacteroides intestinalis DSM
           17393]
 gi|189435799|gb|EDV04784.1| hypothetical protein BACINT_03925 [Bacteroides intestinalis DSM
           17393]
          Length = 652

 Score =  315 bits (806), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 100/422 (23%), Positives = 172/422 (40%), Gaps = 14/422 (3%)

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
           + D    +   R+  +  + E       +   + ++                    + ++
Sbjct: 104 KLDGFEESKVLRVRCVGAHGEIVWLEDHLLSVEKDRSGNPKSLLCYTVNVTGQCERETRI 163

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
                +   I++A  + I I +    +     +   +  +PVE +               
Sbjct: 164 SRMEERNRKIIQALPEFIFIFDENFFLTDVLMSSDTILLHPVEQLRGADGRTIYSPEVSD 223

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQE 567
           +    + + L     + +E        E      RI        +     +HDI +  Q 
Sbjct: 224 LFLRNIRQCLEDGELKEIEYPLDVDDCERHYFQARIAP---FEDNKVMALIHDIGDRVQR 280

Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
            N+L  AK+ AE+    KS FLA +SHEIRTPL AI+GFSE+I              EY 
Sbjct: 281 SNELIEAKQRAEEADRMKSVFLANMSHEIRTPLNAIVGFSEIIA----LTEDEVEKAEYL 336

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
           N I ++ NL+L ++ND+LD+S+IESGK  ++F+ V +   + E   + +L      I + 
Sbjct: 337 NIIQKNSNLLLQLINDILDLSRIESGKSEMNFQLVEMTGLIDEVEKVHRLKMKT-GIRLN 395

Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747
               +    I+ D   + Q+  N LSNAI  T  G  I +       E + + V DTG G
Sbjct: 396 VICPDEEIWIMVDRNRITQVLFNFLSNAIKNTHEG-TITLGLEVC-GEWLKVYVTDTGCG 453

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           +   +L      F ++        +GTGLGLP+ +++V+   GK  + S    G+   + 
Sbjct: 454 IAKEKLPLIFNRFEKL----NDFVQGTGLGLPICQSIVERLGGKISVESEVGVGSTFVMT 509

Query: 808 FP 809
            P
Sbjct: 510 LP 511


>gi|29347243|ref|NP_810746.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|29339142|gb|AAO76940.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 882

 Score =  315 bits (806), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 97/553 (17%), Positives = 206/553 (37%), Gaps = 38/553 (6%)

Query: 278 INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS----LSAYFDEGENLTPETVDKCPIPF 333
           ++ +     + +  L + +      L  R          A     E L        P   
Sbjct: 347 VDGSASWSDEDYRWLSSLANVISICLELRRAKEKVIFEQAALARSERLFKNIFANIPAGV 406

Query: 334 FVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
            +Y   GNL   N   + +       ++             ++ ++     +  +R+  +
Sbjct: 407 EIYDKEGNLVDLNERDMDILGISDKSEVIGLNFFENPNVDAQILESIRKSSITDFRARYS 466

Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
              A       +  +   + +     +  +          I  ++ +     + +     
Sbjct: 467 FECAR-HTGYYRPLKAGVIELYTKVRKLYDNHGNLTGYILINMDNTERIDALKPISDFEN 525

Query: 453 QLCSILEATSDGIA---IINREGIILSTNRAVSKLFGYPVEDILRKPFTVF------LEQ 503
               I +    G A   ++NR+G          K +   + +    P +        +  
Sbjct: 526 LFLLISDYAKVGYAKLNLLNRQGY-------AIKQWFKNMGEDENTPLSDVVGVYSKMHP 578

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTK---EEKLLSLRIIIKKLPFSSCYS---LT 557
           +  S M  +  E      +    ++ +       E   +   +++               
Sbjct: 579 DDRSRMLAFFEEAKKGKAKAFKGEMRILRPGTKNEWNWVRTNVVLNLYEPEKGQVELIGV 638

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
            +DI+  K+ + KL  AK+ AE+    KS FLA +SHEIRTPL AI+GFS ++ +     
Sbjct: 639 NYDITALKETEAKLIEAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSLMVDTE--- 695

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
                  +Y + ++ + +L+L +++D+LD+SKIE+G  +     V ++    + +  +++
Sbjct: 696 -DMEERRQYMDIVEENNDLLLQLISDILDLSKIEAGTFDFTEREVDVNLLCEDIVLAMRM 754

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737
            A    + I         RI++D   + Q+  N ++NA+ FT  G  I +         +
Sbjct: 755 KA-RPNVEILFDRHLPECRIMSDRNRLHQVISNFVNNALKFTEEG-NIRVGYDQLDEAHL 812

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
              + DTG+G+      +  + F ++ +       GTGLGL + +++V+   G+  + S 
Sbjct: 813 RFYIADTGIGIEPEMQNEIFERFVKLNSFVH----GTGLGLSICRSIVEQLGGEIGVDSE 868

Query: 798 PAKGTLIEIIFPL 810
           P KG+      P+
Sbjct: 869 PEKGSCFWFTLPI 881


>gi|299145530|ref|ZP_07038598.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
 gi|298516021|gb|EFI39902.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
          Length = 810

 Score =  315 bits (806), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 108/513 (21%), Positives = 196/513 (38%), Gaps = 36/513 (7%)

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
               D  E +        P    +Y   G L   N   L +      ++         L 
Sbjct: 314 RLALDNSEKILRNIYKNLPAGVELYDKDGYLVDINDKELEIFGLSDKNEALRVN----LF 369

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW----NRENSLAMTFIPFEKANQFPE 426
           D P +      K   L   +    +       I       R   + +T       +   +
Sbjct: 370 DNPNIPSEIKEK---LRAKEDVDFSIDYDFSKISQYVNTRRNGIINLTTKVTALYDSQNQ 426

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA---IINREGIILSTNRAVSK 483
            +    I  +  +T     K++        I +    G A   ++ R+G          +
Sbjct: 427 FINYLFINIDMTETTNAYTKIQEFENLFLLIGDYAKVGFAHFNVLTRDG---YAQDTWYR 483

Query: 484 LFGYPVEDILRKPFTVFLE--QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS- 540
             G      + +   V+        +V+ +++ E+       +L K      +  K    
Sbjct: 484 NLGEKEGIPMPQVIGVYAHVVPEDQAVLKNFVGEV-KTGKATSLRKEVRVCRENGKYTWT 542

Query: 541 -LRIIIKKLPFSSCYS---LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
            + ++++               +DI+  K+ + KL  A+  AE+    KS FLA +SHEI
Sbjct: 543 SINVMVRDYRPQDGIIEMLCINYDITPLKETEQKLIIARDKAEELDRLKSAFLANMSHEI 602

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTPL AI+GFS ++         N R  EY   +  +  L+L +++D+LD+SKIE+G  N
Sbjct: 603 RTPLNAIVGFSSLLAETDSR---NERQ-EYIKIVQENNELLLQLISDILDLSKIEAGTFN 658

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716
             +  V ++E  +E I  + +    K + +          I  D     Q+  N ++NA+
Sbjct: 659 FVYTNVDVNETCAEIIKSMSMKV-SKGVELIFEEPFPECYIYTDKNRFTQVISNFINNAL 717

Query: 717 HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
            FT  G  I +     S++++   VRDTG+G+   + +   + F ++        +GTGL
Sbjct: 718 KFTQQGS-ITLGYEQVSHQKIKFYVRDTGMGIPEEKQKSVFERFVKLNTF----VQGTGL 772

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GL + K++V    G+  + ST   G+      P
Sbjct: 773 GLSICKSIVSQMGGEIGVDSTEGIGSCFWFTHP 805



 Score = 41.9 bits (97), Expect = 0.50,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 53/134 (39%), Gaps = 8/134 (5%)

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
           ++  + ++  ++     L +I +    G+ + +++G ++  N    ++FG   ++   + 
Sbjct: 307 ELQAKEDRLALDNSEKILRNIYKNLPAGVELYDKDGYLVDINDKELEIFGLSDKNEALR- 365

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS---TKEEKLLSLRIIIKKLPFSS- 552
             +F   N PS +   L     +D     +   +     T+   +++L   +  L  S  
Sbjct: 366 VNLFDNPNIPSEIKEKLRAKEDVDFSIDYDFSKISQYVNTRRNGIINLTTKVTALYDSQN 425

Query: 553 ---CYSLTMHDISE 563
               Y     D++E
Sbjct: 426 QFINYLFINIDMTE 439


>gi|183221820|ref|YP_001839816.1| putative two-component regulator [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189911892|ref|YP_001963447.1| two component response regulator sensor histidine kinase/response
           regulator subunits [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167776568|gb|ABZ94869.1| Sensor histidine kinase and response regulator of a two component
           complex [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|167780242|gb|ABZ98540.1| Putative two-component regulator [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 723

 Score =  315 bits (806), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 91/419 (21%), Positives = 179/419 (42%), Gaps = 12/419 (2%)

Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK-MEIEVMQLCSI 457
               I+ + ++S  +  +           +       +     I++++ +E    ++  +
Sbjct: 166 DQFEIEKHNKSSDRLLVVSAGLFLLLSFLILWMIFILKISIKSISEKEMIEDRYFEIEDL 225

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP-FTVFLEQNTPSVMNHYLTEI 516
            + +  G   ++ +G  L  NR  S+ FGY  ++++ K  ++  L +N+ ++        
Sbjct: 226 YQNSPVGFHSLDPDGFFLRVNRTESEWFGYSEKELIGKKKWSDLLTENSRNIFFQNFPIF 285

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHA 574
                   L    +    +   ++L                  + D+++    + +L  A
Sbjct: 286 KKQGYINNLIFEVIKKNGDSIFVNLSSTAIFAQNGLMIRSRSVLVDVTQSIVYERELLLA 345

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
           KK AE+ +  KSDFL+ +SHE+RTPL A+IG S  +  +          +E    +  S 
Sbjct: 346 KKKAEEANKAKSDFLSNMSHELRTPLNAVIGISLWLLEENPKT----EQLENLKNLKFSS 401

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
             +L ++ND+LD +KIE   + +     +L + +    +   + A EK ++      + +
Sbjct: 402 ESLLSLINDILDFNKIEERLVEIERIDFNLKDFLKSITTSFTMRAKEKLLIFNEDIKDTV 461

Query: 695 PR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEV--ILRVRDTGVGMTN 750
           P  I +D   + QI  N+LSNA+ FT  G   + +S     +E V     V DTG+G+  
Sbjct: 462 PEFIHSDPTRLLQILNNLLSNALKFTQVGSITLYVSAIPMDSESVLLTFEVTDTGIGIEP 521

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            + +   + F Q       +  G+GLGL ++KA+V+   G   + S   KG+      P
Sbjct: 522 NKFQSVFEKFTQANQDTTRKFGGSGLGLAISKALVELLGGHLVLTSEVGKGSKFSFSLP 580


>gi|83859411|ref|ZP_00952932.1| sensory box histidine kinase/response regulator [Oceanicaulis
           alexandrii HTCC2633]
 gi|83852858|gb|EAP90711.1| sensory box histidine kinase/response regulator [Oceanicaulis
           alexandrii HTCC2633]
          Length = 624

 Score =  315 bits (806), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 111/457 (24%), Positives = 189/457 (41%), Gaps = 17/457 (3%)

Query: 370 LDAPKLSDNNAIKPVMLYRSD----RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
             A    D+ A     L   +             +  +Q    + L +  +     +   
Sbjct: 16  FLAAVHPDDLAAVQKTLREPEVKPGDPGPHKQNLVFRLQHREGHYLWVEGVGEVLCDADG 75

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
                +G      D    +++     M+    L     G+  ++ E  +L  +  ++ + 
Sbjct: 76  RPERISGTLRNITDKLRIEQEARQAGMRAQMALRVAGLGVWDLDSESGLLRLDATLADIL 135

Query: 486 GYPV---EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT-LEKITLGSTKEEKLLSL 541
           G P    ++I  +    F      S +      +L  D  QT LE + +    E   + +
Sbjct: 136 GRPELAYQEISTETLIAFAHPEHLSEVREMSEALLRGDHEQTNLEHMIINGRGETVWIKV 195

Query: 542 RIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
            I I     +         + D+++ K+ ++ L  A   AE  S  KS FLA +SHEIRT
Sbjct: 196 YIRIVDRDHNDLPIRMIGIVEDLTQHKRAEDTLKAALAHAEAASEAKSQFLANMSHEIRT 255

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
           PL  ++G ++++         N R  E+   I  SG  +L I+ D+LD+SKIE+GK+ L 
Sbjct: 256 PLNGVLGIAQLLALTDL----NDRQKEFVQTIRSSGRALLSIIEDILDLSKIEAGKLKLV 311

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIH 717
             PV   + + E +      A  K + +R S A  + R+ + D   V+QI  N+L NAI 
Sbjct: 312 QRPVRPSDVIEETVQAHAPDAERKALPLRLSQAPELSRVAMVDANRVRQILSNLLGNAIK 371

Query: 718 FTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
           FT +G ++ +    T    + + V DTG GM+    ++    F Q   S     EG+GLG
Sbjct: 372 FTETG-EVRVDALWTETGRIRVEVHDTGPGMSETVQKRVFGRFEQADMSHSRSHEGSGLG 430

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           L +A+ +V    G+  + S P +G      FP     
Sbjct: 431 LAIARELVVLMGGQIGVHSRPGQGACFWFEFPARPAD 467



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/371 (9%), Positives = 88/371 (23%), Gaps = 12/371 (3%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYA---FKMIGMRLCDVSDILHIDPNNHIGDLLKRQNT 142
            W++D+   L  +   L   +G       ++    L   +   H+     + + L R + 
Sbjct: 115 VWDLDSESGLLRLDATLADILGRPELAYQEISTETLIAFAHPEHLSEVREMSEALLRGDH 174

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
                    I G    V I +  + I  R+      R  GIV             K    
Sbjct: 175 EQTNLEHMIINGRGETVWIKV-YIRIVDRDHNDLPIRMIGIVEDLTQHKRAEDTLKAALA 233

Query: 203 KFSHLHEIKKGHSSVEKEKYD-----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257
                 E K    +    +       +           + ++     +        L + 
Sbjct: 234 HAEAASEAKSQFLANMSHEIRTPLNGVLGIAQLLALTDLNDRQKEFVQTIRSSGRALLSI 293

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
              +L   +    + +            ++       +++     L     P LS     
Sbjct: 294 IEDILDLSKIEAGKLKLVQRPVRPSDVIEETVQAHAPDAERKALPLRLSQAPELSRVAMV 353

Query: 318 GENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
             N   + +    +   +           +    T    V+  +   G+S  +       
Sbjct: 354 DANRVRQILSNL-LGNAIKFTETGEVRVDALWTETGRIRVEVHDTGPGMSETVQKRVFGR 412

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
                       + + +  +     +                +   F    P    + +D
Sbjct: 413 FEQADMSHSRSHEGSGLGLAIARELVVLMGGQIGV--HSRPGQGACFWFEFPARPADLDD 470

Query: 438 VDTRINKRKME 448
                 + ++ 
Sbjct: 471 EPQETAQSRLR 481


>gi|254283237|ref|ZP_04958205.1| PAS fold family protein [gamma proteobacterium NOR51-B]
 gi|219679440|gb|EED35789.1| PAS fold family protein [gamma proteobacterium NOR51-B]
          Length = 1947

 Score =  315 bits (806), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 118/717 (16%), Positives = 243/717 (33%), Gaps = 53/717 (7%)

Query: 100  EELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYV 159
            +   +       ++      +    +H    N   + +++Q        L P       +
Sbjct: 768  QRWARAEMRLVSRLANEPFLETVFTMHSSAQNGFVEGVEKQRVLSD---LIPSREDASRL 824

Query: 160  PIDLA-ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVE 218
             + L     ++  +   S      +       N      +RL  +           + + 
Sbjct: 825  TVLLRDGTSVFDSDPGLSHLM-PELRQTVFAGNTTFIPPRRLTDETGASRSEMYFAAPII 883

Query: 219  KEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTI 278
                   +          +   S          +    ++  L+ S      +  +   +
Sbjct: 884  DHAGRPIAAVVATVDPGAEFTSSLGNAVVGQSGETYAFDQSGLMLSNSRFSEQLAELGRL 943

Query: 279  NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH 338
                 T    +  L +   +  E  +    PS        +          P     Y  
Sbjct: 944  PKGGSTV--AYLRLTDPGGDLTEGFTPNRSPSRWPTTAMFQAALQRETGAIPDGARDYRG 1001

Query: 339  GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398
              +  A         +    DI IA  +              I   +L  S    ++   
Sbjct: 1002 RRVLSA-------WVWVPELDIGIAAEIDESEALDSYVLAENILYAVLGISLTLALSLLG 1054

Query: 399  RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR--KMEIEVMQLCS 456
                +      +L +                      ++++ ++  R  ++        +
Sbjct: 1055 LTTWVASRANKALLLA--------------------RDELEDKVEARTEELSESRYLFQT 1094

Query: 457  ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
            +L+ +   I++ + +   L  N+   ++       ++       L            + +
Sbjct: 1095 VLDNSPAAISVKDLDSRYLLVNKIWRQVMSLTRSGVVGFTTRELLPAELAERSEQEDSAV 1154

Query: 517  LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL--TMHDISEWKQEKNKLSHA 574
            +        +     +  E ++              C+++   + D++E       L+HA
Sbjct: 1155 VESGDVIQGQARIKNAEGEVRVFLSYKFPVFDAKGECFAVGSVLSDVTE-------LNHA 1207

Query: 575  KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
             +IA+  +  KSDFLA +SHEIRTP+ AIIG S +            +   Y   + RS 
Sbjct: 1208 MEIADDANQAKSDFLANMSHEIRTPMNAIIGMSHLALQTDLTS----KQRNYIEKVHRSA 1263

Query: 635  NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
              +L I+ND+LD SKIE+GK+++      LD+ +   +SLV L A +  + +      ++
Sbjct: 1264 ESLLGIINDILDFSKIEAGKLDIEAVDFRLDDVMDNLVSLVGLKAEDHGLELLLDVPPDL 1323

Query: 695  PR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS-NEEVI--LRVRDTGVGMTN 750
            P  ++ D   + QI +N+ +NA+ FT  G  ++        N EV     VRD+G+GM  
Sbjct: 1324 PTALIGDPLRLSQILINLGNNAVKFTEDGEVVVAVRVEEESNAEVRMHFSVRDSGIGMNK 1383

Query: 751  YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
             +  +  + F Q  +S   +  GTGLGL ++K +V    G+ ++ S P  G+  +  
Sbjct: 1384 EQQSRLFQSFSQADSSTTRKYGGTGLGLAISKQLVAMMDGEIWVESEPGVGSDFQFT 1440


>gi|78486263|ref|YP_392188.1| multi-sensor hybrid histidine kinase [Thiomicrospira crunogena
           XCL-2]
 gi|78364549|gb|ABB42514.1| PAS/PAC sensor hybrid histidine kinase [Thiomicrospira crunogena
           XCL-2]
          Length = 901

 Score =  315 bits (806), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 91/366 (24%), Positives = 162/366 (44%), Gaps = 26/366 (7%)

Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
           ++  +  G IL  N    K+ GY  E+++ +P ++    + P      +   +       
Sbjct: 386 VSRTDPYGTILYVNDNFCKISGYSKEELVGQPHSIVRHPDMPKSTFENIWTTIQSKK--I 443

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEK 580
                    K  +   +   I  L         +     DI+E    +  L  AK+ AE+
Sbjct: 444 WSGEITNLRKNGETYYVMSYIMPLLDKDGNIKEFLSIREDITERVHLEKSLEKAKQDAEE 503

Query: 581 -------ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
                   +  KS+FL+ +SHE+RTPL +IIGF+++++        + +  +    I  S
Sbjct: 504 RRLVAEKSNQAKSEFLSSMSHELRTPLNSIIGFAQLLELSDL----SEKQKKQLKNISTS 559

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693
           G  +L ++NDLL+++KIESG ++L  E   L   V E + +V   A +  I I  S  +N
Sbjct: 560 GEHLLHLINDLLELAKIESGNISLSVERTELKPIVEECLQMVHTAAEKHHIKITISEKSN 619

Query: 694 IPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS-------NEEVILRVRDTG 745
               ++AD   +KQ+ +N L+NAI +    G I +             N  + + + DTG
Sbjct: 620 CNYFVIADHLRLKQVLVNFLTNAIKYNRENGSITLFAEKKPAEESPHKNGCIRISIEDTG 679

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
            G+     +K  +PF ++   +    EGTG+GL + K +++   G+    ST   G+   
Sbjct: 680 YGIAEKYQKKLFQPFNRL-GHETSTIEGTGIGLAITKDLIEKMDGQVGFESTEGVGSKFW 738

Query: 806 IIFPLY 811
              P+ 
Sbjct: 739 FDIPIA 744



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/127 (12%), Positives = 40/127 (31%), Gaps = 7/127 (5%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGK 146
             D +G +  +++   K  G    +++G     V           +I   ++ +  W G+
Sbjct: 388 RTDPYGTILYVNDNFCKISGYSKEELVGQPHSIVRHPDMPKSTFENIWTTIQSKKIWSGE 447

Query: 147 TTLWPIEGTNLYVPIDLAAL-PIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
            T     G   YV   ++ + P+  ++     F    I              ++  +   
Sbjct: 448 ITNLRKNGETYYV---MSYIMPLLDKDGNIKEF--LSIREDITERVHLEKSLEKAKQDAE 502

Query: 206 HLHEIKK 212
               + +
Sbjct: 503 ERRLVAE 509



 Score = 41.6 bits (96), Expect = 0.56,   Method: Composition-based stats.
 Identities = 13/121 (10%), Positives = 37/121 (30%), Gaps = 12/121 (9%)

Query: 339 GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398
           G + Y N +F  ++ Y   + +     +            +  + +      +   +   
Sbjct: 393 GTILYVNDNFCKISGYSKEELVGQPHSI----VRHPDMPKSTFENIWTTIQSKKIWSGEI 448

Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME-----IEVMQ 453
               ++ N E    M++I     ++         I  +  +    ++ +E      E  +
Sbjct: 449 T--NLRKNGETYYVMSYI-MPLLDKDGNIKEFLSIREDITERVHLEKSLEKAKQDAEERR 505

Query: 454 L 454
           L
Sbjct: 506 L 506


>gi|28199692|ref|NP_780006.1| histidine kinase/response regulator hybrid protein [Xylella
           fastidiosa Temecula1]
 gi|28057813|gb|AAO29655.1| histidine kinase/response regulator hybrid protein [Xylella
           fastidiosa Temecula1]
          Length = 499

 Score =  315 bits (806), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 94/483 (19%), Positives = 179/483 (37%), Gaps = 35/483 (7%)

Query: 338 HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397
            G     N SF    +  SV          ++           IK           +   
Sbjct: 12  DGIFRLTNASFGRHLRLDSV-------VGESVCGIMPDDGPEYIKRYGGVALSGQRVHFE 64

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
           AR    +W         +         PE      +  +  + +  +R++    ++   +
Sbjct: 65  ARALR-RW---------YSVEVMRVGAPEGRLLGVLFVDITEHKRMERRLAESEVRFNIL 114

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
            +     + + + +G +   N A  + FG  +       +++ L      +    L+  L
Sbjct: 115 ADGLPMPVWVFDAQGGMRFVNTAYGEFFGVDLSSGTLPEWSMVLHPEDVLIFEFKLSAAL 174

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM----HDISEWKQEKNKLSH 573
               +  L  +      + +   + +          + + +     D++E  + +     
Sbjct: 175 KT--QSALRALVRARRYDGQWRWIEMSATPRYSPDGHFIGLTGSSQDVTERLEIELAREQ 232

Query: 574 -------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
                  A+  AE  +  K +FL+ +SHE+RTPLT I+G+SE++  +      +P Y   
Sbjct: 233 LLKSERAARNEAENMARLKDEFLSTLSHELRTPLTTILGWSELLLQRI--EEQHPCYKG- 289

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
            + I  S  +   +++D+LD+S +  GKM L  E + L E + E I L +     K   +
Sbjct: 290 LSVIASSAKVQKRLISDMLDLSSMLLGKMQLEMEVLDLVEQIREVIGLYEQVVESKGQRL 349

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
                     +L D   ++QI  N+LSNAI FTP+ G I +       +   + V D+G 
Sbjct: 350 LLRAPEMPCLVLGDATRLRQIFENLLSNAIKFTPTDGCIDVEID-ADGDSFRVSVTDSGD 408

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIE 805
           G+    L      F Q   +      G GLGL + +++V+ + G     S    KG +  
Sbjct: 409 GIAAEFLPHLFSRFRQADGTTTRCHGGLGLGLAIVQSLVEMHGGYVGATSPGLGKGAMFT 468

Query: 806 IIF 808
           +  
Sbjct: 469 VSL 471



 Score = 64.7 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 26/170 (15%), Positives = 51/170 (30%), Gaps = 6/170 (3%)

Query: 68  LDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI 127
            +SE  F        +   W  DA G ++ ++    +  G             V     +
Sbjct: 105 AESEVRFNILADGLPMP-VWVFDAQGGMRFVNTAYGEFFGVDLSSGTLPEWSMVLHPEDV 163

Query: 128 DP-NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHV 186
                 +   LK Q+           +G   +  I+++A P YS +  F G  G      
Sbjct: 164 LIFEFKLSAALKTQSALRALVRARRYDG--QWRWIEMSATPRYSPDGHFIGLTG--SSQD 219

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM 236
                +     ++L K         +  + ++ E     S +   P   +
Sbjct: 220 VTERLEIELAREQLLKSERAARNEAENMARLKDEFLSTLSHELRTPLTTI 269



 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/204 (9%), Positives = 53/204 (25%), Gaps = 13/204 (6%)

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL--SHRNHPSLSAYFDEGENLT 322
              +L  Q         +         +          L      H  +     E E   
Sbjct: 52  GGVALSGQRVHFEARALRRWYSVEVMRVGAPEGRLLGVLFVDITEHKRMERRLAESEVRF 111

Query: 323 PETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
               D  P+P +V+   G + + N ++             ++ G           ++  I
Sbjct: 112 NILADGLPMPVWVFDAQGGMRFVNTAYGEFFGVD------LSSGTLPEWSMVLHPEDVLI 165

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT- 440
               L  + +T  A  A +   +++      +      + +     +   G   +  +  
Sbjct: 166 FEFKLSAALKTQSALRALVRARRYDG-QWRWIEMSATPRYSPDGHFIGLTGSSQDVTERL 224

Query: 441 --RINKRKMEIEVMQLCSILEATS 462
              + + ++        +  E  +
Sbjct: 225 EIELAREQLLKSERAARNEAENMA 248


>gi|330969015|gb|EGH69081.1| PAS protein [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 1188

 Score =  315 bits (806), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 130/754 (17%), Positives = 261/754 (34%), Gaps = 54/754 (7%)

Query: 75  VFDPIPRTVRFTWNI-DAHGYL-KEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH 132
            F+     V F++ + D    L   I+  L     + + +++G         L  D    
Sbjct: 218 KFESRLPPVGFSFAVRDDEQRLLTFINRALDSIAPSTSREVLGR-WTM---GLGADVEGQ 273

Query: 133 IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIY---SRNREFSGFRGFGIVHVNRV 189
              L   +  W     L     T   V       P Y     N  + G     +  ++R+
Sbjct: 274 RIRLTSAERRW----LLKHPSVTIATVQH-----PPYIYKDNNGHWVGLNADVLSRISRM 324

Query: 190 DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH 249
               + + +        +  ++ G + +     +   ++     L         +  +  
Sbjct: 325 -TGLQFVHQESLSTQQSIDMLRAGQADMNTTLAENTERRR---FLDFTYSFGGNSWMFVV 380

Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
           + D         L  +  +LP +                   L++  +     +  R   
Sbjct: 381 RSDHSSRISLDSLAGKVLALPARH-----------------ALEDLIRREHPLIQLRLVN 423

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
           +        E+   +   +  +  +++  G L  A  S            I+    L  +
Sbjct: 424 TYDQARALVESGAADATIQNEVGAYLFPSGELKVA-RSVEGQWSPDRFSVIKTQPELLGI 482

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
           L+        A    +  +   + +          W R        +             
Sbjct: 483 LNKALEEFPVAELRSIRLKWLGSALP-----QPSLWARIPPWVFWVVSLALLTGLVSLAW 537

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
            + ++ +    +  +R++  ++    ++L+   + I + + +G ++S NR+  +  G   
Sbjct: 538 SSRLKVQIRQRQRAQRQLNDQLAFKHALLDGIPNPIYVRDLKGRLISCNRSYEQSLGISF 597

Query: 490 EDILRKPFT--VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
           E +  +  T    + +     M+     +L        ++      K        +    
Sbjct: 598 EQMNGRRLTDVNLIPRALAEQMHTDYLNLLENHQPVFSDRTIELPGKRMDAWQWTVPFFA 657

Query: 548 LPFS-SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
                        DI+E KQ + +L  A ++A + +  KS FLA +SHEIRTP+ AIIG 
Sbjct: 658 ADGQLQGLLGGWIDITERKQLEQQLQEATRLAAQANEAKSAFLASMSHEIRTPMGAIIGL 717

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
            E+   Q       P          RS   ++ ++ + LD+++IE+G M L     SL  
Sbjct: 718 LELECEQALRLGMMPSQG--LQVAHRSATELVALIGESLDLARIEAGGMQLSLAVTSLRG 775

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQI 725
                I L    A EK + +R   +         D   ++Q+  N+L NA+ FT  G  +
Sbjct: 776 LFDGVIELFSAQAREKGVELRLELSAQARGDYWLDPLRLRQVLHNVLGNALKFTRQGAVV 835

Query: 726 I---ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
           +   +++    +  V + ++D+G G+     ++  +PF Q  +       G+GLGL + +
Sbjct: 836 VRLDVTSDSPDSTRVRIGIQDSGEGIDPQRQQQVFQPFTQANDDTAAHYGGSGLGLSITR 895

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
            +V    G   + S P KGTL+ I  PL   S P
Sbjct: 896 QLVALMKGDISLHSEPGKGTLVTIDLPLTRVSEP 929


>gi|251778065|ref|ZP_04820985.1| sensor histidine kinase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243082380|gb|EES48270.1| sensor histidine kinase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 564

 Score =  315 bits (806), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 76/358 (21%), Positives = 156/358 (43%), Gaps = 32/358 (8%)

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
             ++ SIL +   G+  ++   +++S N    ++FG     +         + +  + + 
Sbjct: 236 QTRIESILRSMESGVIAVDNNNVVISINPYAERIFGIKKNILGESIIEYISDYDINTFLE 295

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570
                   + +   +E+                 I          +T+ DI++ K+ +  
Sbjct: 296 EDYEIDKEIKILHPIERELKIKKSN---------IINGIEMIGKVITIQDITDIKKLE-- 344

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
                         ++ F+A VSHE++TPLT+I GF+E ++        N    ++ N I
Sbjct: 345 ------------LMRTQFVANVSHELKTPLTSIKGFAETLR----YVEDNETREKFLNII 388

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
           D+    +  ++ND+L +S IES     + E       + + I++V+  AN K I +   +
Sbjct: 389 DKESERLSRLINDILVLSSIESNISTPNDE-FLPKVIIEDVINMVRKLANNKDINLEF-Y 446

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
            +N   IL D     Q+ LN++ NAI ++ +G ++ +  +++      L + D G+G+  
Sbjct: 447 DDNQELILGDKDKFYQLTLNLVENAIKYSENGSKVKV-VSYSKQGYYYLEISDNGIGIPK 505

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            +L +  + F ++  S   +  GTGLGL + K +V    G   + ST  +G+  ++  
Sbjct: 506 EDLPRVFERFYRVDKS--RKKGGTGLGLAIVKHIVKTFNGDINVKSTLGEGSTFKVRI 561


>gi|188589597|ref|YP_001920541.1| sensory histidine kinase [Clostridium botulinum E3 str. Alaska E43]
 gi|188499878|gb|ACD53014.1| sensor histidine kinase [Clostridium botulinum E3 str. Alaska E43]
          Length = 555

 Score =  315 bits (806), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 76/358 (21%), Positives = 156/358 (43%), Gaps = 32/358 (8%)

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
             ++ SIL +   G+  ++   +++S N    ++FG     +         + +  + + 
Sbjct: 227 QTRIESILRSMESGVIAVDNNNVVISINPYAERIFGIKKNILGESIIEYISDYDINTFLE 286

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570
                   + +   +E+                 I          +T+ DI++ K+ +  
Sbjct: 287 EDYEIDKEIKILHPIERELKIKKSN---------IINGIEMIGKVITIQDITDIKKLE-- 335

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
                         ++ F+A VSHE++TPLT+I GF+E ++        N    ++ N I
Sbjct: 336 ------------LMRTQFVANVSHELKTPLTSIKGFAETLR----YVEDNETREKFLNII 379

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
           D+    +  ++ND+L +S IES     + E       + + I++V+  AN K I +   +
Sbjct: 380 DKESERLSRLINDILVLSSIESNISTPNDE-FLPKVIIEDVINMVRKLANNKDINLEF-Y 437

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
            +N   IL D     Q+ LN++ NAI ++ +G ++ +  +++      L + D G+G+  
Sbjct: 438 DDNQELILGDKDKFYQLTLNLVENAIKYSENGSKVKV-VSYSKQGYYYLEISDNGIGIPK 496

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            +L +  + F ++  S   +  GTGLGL + K +V    G   + ST  +G+  ++  
Sbjct: 497 EDLPRVFERFYRVDKS--RKKGGTGLGLAIVKHIVKTFNGDINVKSTLGEGSTFKVRI 552


>gi|229035123|ref|ZP_04189069.1| hypothetical protein bcere0028_51490 [Bacillus cereus AH1271]
 gi|228728189|gb|EEL79219.1| hypothetical protein bcere0028_51490 [Bacillus cereus AH1271]
          Length = 613

 Score =  315 bits (806), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 84/372 (22%), Positives = 158/372 (42%), Gaps = 25/372 (6%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +  +   E E  +L S+L   +DG+   +R+G I+  N    K+     E  L +     
Sbjct: 258 QQARSSTESERRKLSSVLSHMTDGVIATDRKGDIILLNDPAEKMLNVSRETALDQSVLEV 317

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
           L       ++H   E  S+ L  +                  +I K+   ++     ++D
Sbjct: 318 LGIQEEFTLDHLYEEPDSVLLDFSTRNEPYILRAS-----FSVIQKETGKANGLIAVLYD 372

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           ++                E+    + +F+A VSHE+RTPLT +  + E + +  +     
Sbjct: 373 VT--------------EQERIERERREFVANVSHELRTPLTTMRSYLEALTDGAWQDPNI 418

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
                +          ++ +VN LL +SK++S +  L  E V   +  +  I   +  + 
Sbjct: 419 APQ--FLTVTQEETERMIRLVNALLQLSKLDSTEHRLMKEWVDFTDFFNNIIDRFE-MSK 475

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV-IL 739
           E+ +  + SF+     I  D   + Q+  NI+SNA+ ++P GG +          E+  +
Sbjct: 476 EQNVSFKRSFSKKSRFIDMDTDKITQVLYNIISNALKYSPEGGTVT--YRLRDRGELLEI 533

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V D G+G+    ++K  + F ++  ++  +  GTGLGL +AK M++A+ G  +  S   
Sbjct: 534 SVSDQGMGIPKENVDKIFERFYRVDKARSRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEG 593

Query: 800 KGTLIEIIFPLY 811
           KGT I    P+ 
Sbjct: 594 KGTTIYFTLPMA 605


>gi|149277932|ref|ZP_01884071.1| two-component sensor histidine kinase [Pedobacter sp. BAL39]
 gi|149231130|gb|EDM36510.1| two-component sensor histidine kinase [Pedobacter sp. BAL39]
          Length = 1147

 Score =  315 bits (806), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 110/732 (15%), Positives = 240/732 (32%), Gaps = 92/732 (12%)

Query: 95   LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEG 154
            +   ++ L +       ++ G  L D+   L    +    +LL+                
Sbjct: 368  VSIANKPLAELWNKSLNEVTGRLLLDILPEL---KDQAFPELLRS--------------- 409

Query: 155  TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214
                  +  + LP                                L  +   L  +   +
Sbjct: 410  ------VYSSGLPNR----------------------QDEVEVYFLTPEGRELKYVSYSY 441

Query: 215  SSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQED 274
              +      + +       +     V    +      +  +     +  S E  +   E+
Sbjct: 442  DPLFDPNGRVNAIVVSANDITA---VVKTRQLLEESHEEQQALNEEVTASNEELIASNEE 498

Query: 275  FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF 334
                N       +          E+ E L H             E      + +  I   
Sbjct: 499  LAAANEELAAANEELAVTNEELSETQEQLHHTLGK-----LGLSEQRFRNLIREATIGII 553

Query: 335  VYSH--GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
            + S     +   N ++  L    + + +       +L D    +     K +    +   
Sbjct: 554  LLSGPELTVQIVNKAYGDLIGRNTDELLGK-----SLFDIIPEAAGAFRKVIEPVMTTGR 608

Query: 393  CIAASARLHTIQWNRENS-LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV 451
             ++   + + +  +       +            E      +  +      +++ +E   
Sbjct: 609  PVSLYDQYYFVNKDDTRIEGYLNLTYQPYRETDGEVTGVLVLCQDVTAQVRDQQLLEAGE 668

Query: 452  MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
             +   +L +    +     +G +   N+ V+  FG   E+I+ + +  F+  +       
Sbjct: 669  RRFQFMLNSIPQQVWTALPDGKLNYVNQVVAADFGRSAEEIIGQGWEAFVHPDDLPASIL 728

Query: 512  YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---YSLTMHDISEWKQEK 568
               E L                 +   L                 +  T  +I   KQ +
Sbjct: 729  GWQEALESGKEYL--AEFRLRFADGAYLWHLTRAVPFVEDGNITVWLGTNTNIELQKQNE 786

Query: 569  NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
             +              K +FL+  SHE++TPLT I  F++++K      +G      Y  
Sbjct: 787  QR--------------KDEFLSIASHELKTPLTGIKAFNQLMKRHDPSRIGV-----YVE 827

Query: 629  YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
                +   +  ++NDLLD++KI +GK+    +P      +++++  VQL ++  +I++  
Sbjct: 828  KSGENIQRLEKLINDLLDVTKINAGKLTYDLKPFDFSGMLADSVESVQLTSSTHQIILEK 887

Query: 689  SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748
                +      D   ++Q+  N L+NA+ ++P   Q+ I+        V + VRD G+G+
Sbjct: 888  ---PDQLEYNGDRLRLEQVVTNFLTNAVKYSPDANQVQINCWVEEGG-VFVSVRDFGIGI 943

Query: 749  TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
             +  +++    + +I N   +R EG GLGL ++  ++  +MG F+I S P +G+      
Sbjct: 944  QDQHIQRLFDRYYRIDN-TSMRFEGLGLGLFISAEILKRHMGTFWIESEPGEGSTFYFRL 1002

Query: 809  PLYDTSHPHDCI 820
            PL   + P + I
Sbjct: 1003 PLVQ-NEPVEVI 1013



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 23/246 (9%), Positives = 61/246 (24%), Gaps = 11/246 (4%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY--GKT 147
                ++ +++     IG    +++G  L D+           I  ++          + 
Sbjct: 557 GPELTVQIVNKAYGDLIGRNTDELLGKSLFDIIPEAAGAFRKVIEPVMTTGRPVSLYDQY 616

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                + T +   ++L   P    + E +G     +          + L +  +++F  +
Sbjct: 617 YFVNKDDTRIEGYLNLTYQPYRETDGEVTGV--LVLCQDVTAQVRDQQLLEAGERRFQFM 674

Query: 208 HEIKKGHSSVEKEKYDIFSQQ---SPPPHLRMKNKVSSLTEYYAHKDD--VLKTEKYPLL 262
                           +       +       +  +    E + H DD           L
Sbjct: 675 LNSIPQQVWTALPDGKLNYVNQVVAADFGRSAEEIIGQGWEAFVHPDDLPASILGWQEAL 734

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
            S +  L E       +                      +L    +  L    ++ ++  
Sbjct: 735 ESGKEYLAE-FRLRFADGAYLW-HLTRAVPFVEDGNITVWLGTNTNIELQKQNEQRKDEF 792

Query: 323 PETVDK 328
                 
Sbjct: 793 LSIASH 798



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/135 (14%), Positives = 40/135 (29%), Gaps = 9/135 (6%)

Query: 74  FVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI 133
           F F       +  W     G L  +++ +    G  A ++IG           + P + +
Sbjct: 671 FQFMLNSIPQQ-VWTALPDGKLNYVNQVVAADFGRSAEEIIGQGWEAFVHPDDL-PASIL 728

Query: 134 --GDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN 191
              + L+    +  +  L   +G   Y+     A+P +  +   +     G      +  
Sbjct: 729 GWQEALESGKEYLAEFRLRFADG--AYLWHLTRAVP-FVEDGNIT--VWLGTNTNIELQK 783

Query: 192 DPRALGKRLDKKFSH 206
                        SH
Sbjct: 784 QNEQRKDEFLSIASH 798


>gi|328952020|ref|YP_004369354.1| multi-sensor hybrid histidine kinase [Desulfobacca acetoxidans DSM
            11109]
 gi|328452344|gb|AEB08173.1| multi-sensor hybrid histidine kinase [Desulfobacca acetoxidans DSM
            11109]
          Length = 1352

 Score =  314 bits (805), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 80/270 (29%), Positives = 153/270 (56%), Gaps = 14/270 (5%)

Query: 563  EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
            E K +  +L  A +  ++    K++FLA VSHE+RTPL +I+G+++++ +   G +   +
Sbjct: 835  ELKNKSLELGEANRALKELDRLKTEFLANVSHELRTPLNSILGYTQLLLDGVDGAINEDQ 894

Query: 623  YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                   ++++ N +L ++ND+LD+SK+ +G++ L+ +   L E +SEA+ +V+  A  K
Sbjct: 895  QKSLLR-VEKASNRLLQLINDVLDLSKLRAGRLELNAQKEDLHEILSEALQVVEPLARAK 953

Query: 683  RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII---STTHTSN----- 734
             I ++    + +P ++ D   + Q+ LN+LSNA+ FT S G I I   + +   +     
Sbjct: 954  EISLKVE-ESEVPPVIVDRDKIIQVLLNLLSNAVKFTDSHGLITINLNTVSLPESHGLIK 1012

Query: 735  EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
            +   +R+ DTG+G+   +L+   + F QI +S   R  GTGLGLP+++ +V+ + G+ ++
Sbjct: 1013 DYAAVRISDTGIGIKEDDLQNIFQEFVQIDSSATRRHGGTGLGLPISRHLVEMHGGRIWV 1072

Query: 795  FSTPAKGTLIEIIFPL----YDTSHPHDCI 820
             S   KG+    I PL     + + P + +
Sbjct: 1073 ESEYGKGSTFTFILPLPTPKSEAAIPSEEV 1102


>gi|257486235|ref|ZP_05640276.1| PAS [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 1189

 Score =  314 bits (805), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 130/680 (19%), Positives = 241/680 (35%), Gaps = 56/680 (8%)

Query: 149 LWPIEGTNLYVPIDLAALPI--YSRNREFSGFRG--FGIVHVNRVDNDPRALGKRLDKKF 204
            W  +   + V ++ A  P+  +     F G       +V +             L    
Sbjct: 281 RWIAQHPTVRVVVNEAYAPLTFFDAKGNFRGITADLLELVRLRTGLRFDVKRSPSLTDML 340

Query: 205 SHLHEIKKGHS---SVEKEKYDIFSQQSP-----PPHLRMKNKVSSLTEYYAHKDDVLKT 256
           + + E +           E+ D  S   P        +  K++ S           +  T
Sbjct: 341 NQVSEGQADLIGALVSSDEREDHLSFSRPYIDNSFVLVTRKDQGSPSYLEQMDGKRLAIT 400

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
           +  P+L       P        N  Q       G  +                       
Sbjct: 401 QGSPMLDWLRRKYPRVVPLEIDNPFQALDMLSLGRTEGAVISLLSADY------------ 448

Query: 317 EGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
                            F               L++   S +  E++  L   L +    
Sbjct: 449 -----------FLSSGIFEERLQMTATIGEDPALISMATSRNATELSSILDKALASIAPQ 497

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           D  AI       +            +  W+    L    +                +  +
Sbjct: 498 DLAAINNRWRAYAP----------SSASWHDYERLIYQILISAGLLLLGLLAWNAWMRRQ 547

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
                  +R +  +   + +++E T   I + +REG++   N +  ++F    EDI+ K 
Sbjct: 548 IRQREAAERALGDQFEFMRALVEGTPHPIYVRDREGMLRMCNDSYLRVFSAQREDIIGKS 607

Query: 497 FTVFLEQNTPSV--MNHYLTEILSLDLRQTLEKITLGSTKEEKLL-SLRIIIKKLPFSSC 553
            T  +  N             +++ +    L++      ++  +   +      L     
Sbjct: 608 ATEGVLGNAFEAREYAADYQRVMASNTALILDRPLRIGDRQMTIYHWILPFRDSLGEVQG 667

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
                 DISE +Q    L  AK+ A+  S  KS FLA +SHEIRTP+ A+IG  E+   +
Sbjct: 668 IIGGWIDISERRQLIEDLQAAKEQADAASRAKSTFLATMSHEIRTPMNAVIGMLELALKR 727

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
                 +            S N +LD++ D+LDI++IESG+++L+ E  +L   V   + 
Sbjct: 728 ADHGELD---RSAIEVAYSSANDLLDLIGDILDIARIESGRLSLNPERANLRRLVESVLR 784

Query: 674 LVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTH 731
           +    A +K + +     + I   +L D    KQI  N++SNAI FTP G  +I++    
Sbjct: 785 VFDGLARQKDLDLVLELDSRINADVLIDPLRFKQILSNLVSNAIKFTPMGRIKIVLQAAE 844

Query: 732 TSNE---EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
           + +     + + V+D+G+G++  + ++  +PF Q  N+ Q+   G GLGL + +++    
Sbjct: 845 SPDPQLLHLHITVQDSGIGISAEDQQRLFEPFAQADNTGQMARTGAGLGLVICRSLCMMM 904

Query: 789 MGKFYIFSTPAKGTLIEIIF 808
            G   + S P +GT I +  
Sbjct: 905 GGNLSLDSVPGQGTRISMNL 924



 Score = 40.8 bits (94), Expect = 0.92,   Method: Composition-based stats.
 Identities = 23/239 (9%), Positives = 50/239 (20%), Gaps = 15/239 (6%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCD--VSDILHIDPNNHIGDLLKRQNTWYGKT 147
           D  G L+  ++   +        +IG    +  + +             +   NT     
Sbjct: 580 DREGMLRMCNDSYLRVFSAQREDIIGKSATEGVLGNAFEAREYAADYQRVMASNTALILD 639

Query: 148 TLWPIEGTN--LYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
               I      +Y  I    LP      E  G  G  I              +   ++  
Sbjct: 640 RPLRIGDRQMTIYHWI----LPFRDSLGEVQGIIGGWI--DISERRQLIEDLQAAKEQAD 693

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
                K    +    +                 +++     +   D       Y      
Sbjct: 694 AASRAKSTFLATMSHEIRTPMNAVIGML-----ELALKRADHGELDRSAIEVAYSSANDL 748

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
              + +  D   I   + +       L+   +                   E ++    
Sbjct: 749 LDLIGDILDIARIESGRLSLNPERANLRRLVESVLRVFDGLARQKDLDLVLELDSRINA 807


>gi|23100906|ref|NP_694373.1| two-component sensor histidine kinase [Oceanobacillus iheyensis
           HTE831]
 gi|22779140|dbj|BAC15407.1| two-component sensor histidine kinase [Oceanobacillus iheyensis
           HTE831]
          Length = 612

 Score =  314 bits (805), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 80/369 (21%), Positives = 167/369 (45%), Gaps = 23/369 (6%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
             +E E  +L SIL   SDG+   + +G +   N A +KL G   ED++       L   
Sbjct: 261 ATIEEERRKLSSILANMSDGVIATDNDGSVTLMNDAAAKLIGENPEDLIGDSVIDVLHLE 320

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564
              +    L    S+ +  + E            +     + +    + +   + D++E 
Sbjct: 321 GKEIDLSELHSNGSMIIDFSNEDTPFLIRANFSTV-----VDEEEEVTGFITVISDVTEQ 375

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           ++ + +              + DF++ VSHE+RTPLT +  + E + +  +         
Sbjct: 376 QKMEQE--------------RRDFVSNVSHELRTPLTTMKSYLEALSDGAW--ENKEIAP 419

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
            + +   +  N ++ +VNDLL +SK++S ++ +H +       + + +   +     + I
Sbjct: 420 RFLDVTQKETNRMIRMVNDLLQLSKMDSDELPMHKQREEFTSYLYQVLDRYE-MNKPESI 478

Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744
            +  +  N    +  D   + Q+  N+++NAI ++P GG+I +         +++ ++D 
Sbjct: 479 HMEKNIPNTKAYVWMDRDKITQVLDNVITNAIKYSPDGGKIRVKLDIR-RHYLLVSIQDQ 537

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G+   +L+K  + F ++  ++  +  GTGLGL + K +V+A+ G+ +  S+  KGT I
Sbjct: 538 GMGIAYDKLDKIFERFYRVDKARNRKLGGTGLGLAITKELVEAHHGQIWAQSSEGKGTTI 597

Query: 805 EIIFPLYDT 813
               PL  +
Sbjct: 598 LFTLPLMSS 606



 Score = 46.2 bits (108), Expect = 0.023,   Method: Composition-based stats.
 Identities = 16/155 (10%), Positives = 41/155 (26%), Gaps = 15/155 (9%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            D  G +  +++   K IG     +IG  + DV  +   + +                + 
Sbjct: 284 TDNDGSVTLMNDAAAKLIGENPEDLIGDSVIDVLHLEGKEIDLSELH--------SNGSM 335

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD-----KK 203
           +      +    I      +     E +GF    ++             +        + 
Sbjct: 336 IIDFSNEDTPFLIRANFSTVVDEEEEVTGF--ITVISDVTEQQKMEQERRDFVSNVSHEL 393

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKN 238
            + L  +K    ++    ++          +  K 
Sbjct: 394 RTPLTTMKSYLEALSDGAWENKEIAPRFLDVTQKE 428


>gi|169829555|ref|YP_001699713.1| alkaline phosphatase synthesis sensor protein [Lysinibacillus
           sphaericus C3-41]
 gi|168994043|gb|ACA41583.1| Alkaline phosphatase synthesis sensor protein [Lysinibacillus
           sphaericus C3-41]
          Length = 498

 Score =  314 bits (805), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 81/365 (22%), Positives = 163/365 (44%), Gaps = 26/365 (7%)

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
           E+E  +L +++E     + +I REG I   NR   + FG  ++++  K F       +  
Sbjct: 155 EVEEERLKTLIENMGSSLMMIGREGNISIVNRVFLERFGMQIDEVQGKVFRTIGLPKSLE 214

Query: 508 VMNHYLTEIL---SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564
               ++          ++  +++           +     I          + MHDI+E 
Sbjct: 215 QFIDHVFLTEMPYRQQIKMEIKQELYNKEVYGAPV-----IGDHGRWLGVVIVMHDITEL 269

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
            + +                + DF+A VSHE+RTP+T+I GFSE + +  +        I
Sbjct: 270 VRLE--------------QIRKDFVANVSHELRTPITSIKGFSETLLDGAY--KDEKMLI 313

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
            +   I +  N +  ++ DLL++SKIE     ++  P+ L + +     L     +EK +
Sbjct: 314 SFLEIIYKESNRLQMLIQDLLELSKIEQHGFTVNIMPMGLQDVLIRGAELTAPRLDEKNM 373

Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744
             +     ++ +++ D   + QI  N+++NAI ++P    + I     +    I+ + D 
Sbjct: 374 SFQVDIDGDV-QVMGDANRIIQIVTNLITNAITYSPENTTVSIRLK-ENETYGIIEIEDQ 431

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G+  +E+ +  + F ++  ++     GTGLGL + K +V+A+ G+  + S    GT +
Sbjct: 432 GIGIEKHEIARVFERFYRVDRARSRNSGGTGLGLAIVKHLVEAHHGRIQVESEVGVGTTM 491

Query: 805 EIIFP 809
            ++ P
Sbjct: 492 IVMIP 496


>gi|118480493|ref|YP_897644.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           thuringiensis str. Al Hakam]
 gi|196041968|ref|ZP_03109255.1| sensory box histidine kinase YycG [Bacillus cereus NVH0597-99]
 gi|196045450|ref|ZP_03112681.1| sensory box histidine kinase YycG [Bacillus cereus 03BB108]
 gi|225867446|ref|YP_002752824.1| sensory box histidine kinase YycG [Bacillus cereus 03BB102]
 gi|300118834|ref|ZP_07056554.1| sensory box histidine kinase YycG [Bacillus cereus SJ1]
 gi|301056939|ref|YP_003795150.1| sensory box histidine kinase YycG [Bacillus anthracis CI]
 gi|118419718|gb|ABK88137.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           thuringiensis str. Al Hakam]
 gi|196023657|gb|EDX62333.1| sensory box histidine kinase YycG [Bacillus cereus 03BB108]
 gi|196027223|gb|EDX65843.1| sensory box histidine kinase YycG [Bacillus cereus NVH0597-99]
 gi|225789643|gb|ACO29860.1| sensory box histidine kinase YycG [Bacillus cereus 03BB102]
 gi|298723802|gb|EFI64524.1| sensory box histidine kinase YycG [Bacillus cereus SJ1]
 gi|300379108|gb|ADK08012.1| sensory box histidine kinase YycG [Bacillus cereus biovar anthracis
           str. CI]
          Length = 613

 Score =  314 bits (805), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 84/372 (22%), Positives = 158/372 (42%), Gaps = 25/372 (6%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +  +   E E  +L S+L   +DG+   +R+G I+  N    K+     E  L +     
Sbjct: 258 QQARSSTESERRKLSSVLSHMTDGVIATDRKGDIILLNDPAEKMLNVSRETALDQSVLEV 317

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
           L       ++H   E  S+ L  +                  +I K+   ++     ++D
Sbjct: 318 LGIQEEFTLDHLYEEPDSVLLDFSTRNEPYILRAS-----FSVIQKETGKANGLIAVLYD 372

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           ++                E+    + +F+A VSHE+RTPLT +  + E + +  +     
Sbjct: 373 VT--------------EQERIERERREFVANVSHELRTPLTTMRSYLEALTDGAWQDPNI 418

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
                +          ++ +VN LL +SK++S +  L  E V   +  +  I   +  + 
Sbjct: 419 APQ--FLTVTQEETERMIRLVNALLQLSKLDSTEHRLMKEWVDFTDFFNNIIDRFE-MSK 475

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV-IL 739
           E+ +  + SF+     I  D   + Q+  NI+SNA+ ++P GG +          E+  +
Sbjct: 476 EQNVSFKRSFSKKSRFIDMDTDKITQVLYNIISNALKYSPEGGTVT--YRLRDRGELLEI 533

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V D G+G+    ++K  + F ++  ++  +  GTGLGL +AK M++A+ G  +  S   
Sbjct: 534 SVSDQGMGIPKENVDKIFERFYRVDKARSRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEG 593

Query: 800 KGTLIEIIFPLY 811
           KGT I    P+ 
Sbjct: 594 KGTTIYFTLPMA 605


>gi|302344471|ref|YP_003809000.1| PAS/PAC sensor hybrid histidine kinase [Desulfarculus baarsii DSM
           2075]
 gi|301641084|gb|ADK86406.1| PAS/PAC sensor hybrid histidine kinase [Desulfarculus baarsii DSM
           2075]
          Length = 822

 Score =  314 bits (805), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 99/668 (14%), Positives = 214/668 (32%), Gaps = 64/668 (9%)

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSS 242
                     A  ++ +     + E       V ++    F  Q+         +  +  
Sbjct: 22  RELADLRRRLAELEQSEAALRMIVEASLNGVIVFQDGKAQFVNQAISRFSGYAPEELLGR 81

Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302
                 H +D     +  L        P+      I+ +   +      ++         
Sbjct: 82  PIFDLLHPEDRDLIVERHLTRLRGGDAPQNYQLRFIHKDGDLRWLTVAGVRVEWLGRPAV 141

Query: 303 L----SHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSV 357
           L       +   L      G       +D  P   F +     + + N +   LT + + 
Sbjct: 142 LCFFGDITDERFLQEELRRGAQELRNILDASPTAMFVIDRAHRITHWNRACEALTDFSAD 201

Query: 358 DDIEIAG------GLSTLLDAPKLSDNNAIKPVMLYRSD--------RTCIAASARLHTI 403
           + I          G    L A  + D   +  +              R    A     ++
Sbjct: 202 EVIRSQRHAEVFYGKDRPLLADLIVDGAPLAEMRRVYGPSVEPSPLIRGAFQAEGHFSSL 261

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
                    + F+     +   + +       +    +  ++ +    ++  ++ EA+SD
Sbjct: 262 ---GGAPTWLYFLAAPLKDADGQVVGAIETLFDVSQDKRAQKALRESELRYRALFEASSD 318

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP-----SVMNHYLTEILS 518
            I I + +  ++  N A  +L G+  + ++ KP         P       +   +  +  
Sbjct: 319 AIFIFDGD-ALVDCNPAAEELLGFERQRMIGKPAWDASPDEQPDGRPSPEVARRMLALAR 377

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578
               Q    +++    +   L + +    +P          D++E  + + +    ++  
Sbjct: 378 RGQPQFFHWVSVKEGGQPVQLEMTLKSLDIPGRDLVLALARDVTERTKAEEEKRLLEEQL 437

Query: 579 EKES--SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR---S 633
            +             ++H+    L A++G+ E+  ++        R  + A  I +   +
Sbjct: 438 RQSQKMEALGTLAGGIAHDFNNILGAVMGYGELALSRA------ARGRDCAGEISQVLYA 491

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693
            +    +V  +L  S+    K+     P+ L+  V   + L++     K I I    A +
Sbjct: 492 ADRAKSLVRQILTFSR----KVESRPRPMDLNSDVKRCVELLRNLIP-KMIHIELDLAPD 546

Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT--------------HTSNEEVIL 739
           +  + AD   ++Q+ +N+  NA    P GG++ I+T                +    V+L
Sbjct: 547 LALVSADSNQIEQVLINLGVNAADAMPGGGRLAIATRNLDVDQDFCQGRPDLSPGPYVLL 606

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V D+G GM    L+    PF          G GTGLGL  A  +V  + G+    S P 
Sbjct: 607 EVTDSGQGMDQQTLDHIFDPFFTTK----EVGHGTGLGLSTAYGIVKGHGGRIACRSAPG 662

Query: 800 KGTLIEII 807
           +G    + 
Sbjct: 663 QGATFRVY 670



 Score = 97.4 bits (241), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 38/390 (9%), Positives = 95/390 (24%), Gaps = 32/390 (8%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID--PNNHIGDLLKRQNTWYGKTTL 149
            G  + +++ + +  G    +++G  + D+      D     H+  L         +   
Sbjct: 57  DGKAQFVNQAISRFSGYAPEELLGRPIFDLLHPEDRDLIVERHLTRLRGGDAPQNYQLRF 116

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNR-----VDNDPRALGKRLDKKF 204
              +G      + +A + +       +    FG +   R     +    + L   LD   
Sbjct: 117 IHKDGDLR--WLTVAGVRV-EWLGRPAVLCFFGDITDERFLQEELRRGAQELRNILDASP 173

Query: 205 SHLHEIKKGHS-SVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL-- 261
           + +  I + H  +      +  +  S    +R +                L  +  PL  
Sbjct: 174 TAMFVIDRAHRITHWNRACEALTDFSADEVIRSQRHAEVFYGKDRPLLADLIVDGAPLAE 233

Query: 262 -----------LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN----SKESFEYLSHR 306
                            +   +  F ++             L++                
Sbjct: 234 MRRVYGPSVEPSPLIRGAFQAEGHFSSLGGAPTWLYFLAAPLKDADGQVVGAIETLFDVS 293

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
                     E E       +      F++    L   NP+   L  ++    I      
Sbjct: 294 QDKRAQKALRESELRYRALFEASSDAIFIFDGDALVDCNPAAEELLGFERQRMIGKPAW- 352

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
               D       +      +    R          +++   +    +      K+   P 
Sbjct: 353 DASPDEQPDGRPSPEVARRMLALARRGQPQFFHWVSVKEGGQP---VQLEMTLKSLDIPG 409

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
                 +  +  +    + +  +   QL  
Sbjct: 410 RDLVLALARDVTERTKAEEEKRLLEEQLRQ 439



 Score = 84.3 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 62/159 (38%), Gaps = 2/159 (1%)

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
               +    +    E  D R    ++E     L  I+EA+ +G+ +  ++G     N+A+
Sbjct: 9   RPGGDGQAPDDPRRELADLRRRLAELEQSEAALRMIVEASLNGVIVF-QDGKAQFVNQAI 67

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSV-MNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
           S+  GY  E++L +P    L      + +  +LT +   D  Q  +   +    + + L+
Sbjct: 68  SRFSGYAPEELLGRPIFDLLHPEDRDLIVERHLTRLRGGDAPQNYQLRFIHKDGDLRWLT 127

Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579
           +  +  +            DI++ +  + +L    +   
Sbjct: 128 VAGVRVEWLGRPAVLCFFGDITDERFLQEELRRGAQELR 166



 Score = 65.0 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 27/316 (8%), Positives = 67/316 (21%), Gaps = 45/316 (14%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMI-----------------------GMRLCDVS 122
            + ID    +   +          A ++I                       G  L ++ 
Sbjct: 176 MFVIDRAHRITHWNRACEALTDFSADEVIRSQRHAEVFYGKDRPLLADLIVDGAPLAEMR 235

Query: 123 DILHI--DPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRG 180
            +     +P+  I    + +  +                 +   A P+   + +  G   
Sbjct: 236 RVYGPSVEPSPLIRGAFQAEGHFSSL--------GGAPTWLYFLAAPLKDADGQVVGAIE 287

Query: 181 --FGIVHVNRVDNDPRALGKRLDKKFSHLHEIK-----KGHSSVEKEKYDIFSQQSPPPH 233
             F +    R     R    R    F    +                  ++   +     
Sbjct: 288 TLFDVSQDKRAQKALRESELRYRALFEASSDAIFIFDGDALVDCNPAAEELLGFER---Q 344

Query: 234 LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293
             +       +                +L       P+   + ++       +       
Sbjct: 345 RMIGKPAWDASPDEQPDGRPSPEVARRMLALARRGQPQFFHWVSVKEGGQPVQLEMTLKS 404

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP--IPFFVYSHGNLFYANPSFLLL 351
            +       L+     +     +E + L  E + +          + G     N     +
Sbjct: 405 LDIPGRDLVLALARDVTERTKAEEEKRLLEEQLRQSQKMEALGTLAGGIAHDFNNILGAV 464

Query: 352 TKYKSVDDIEIAGGLS 367
             Y  +     A G  
Sbjct: 465 MGYGELALSRAARGRD 480


>gi|262198444|ref|YP_003269653.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
 gi|262081791|gb|ACY17760.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
          Length = 830

 Score =  314 bits (805), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 100/487 (20%), Positives = 187/487 (38%), Gaps = 30/487 (6%)

Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
           +   L ++ +          + L DA +              +    +  +A +     +
Sbjct: 54  AAEALAEWPAGSLPGGVIHPAILGDAAETGQPVYRDGSERIAAIPKRLRHAAAVLPWTLD 113

Query: 407 RENS---LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
             ++   + +       A +        G+            + E    +  +I++    
Sbjct: 114 DGSAGAFVLVRAGAAFTAEERGYLESLLGVLGLLAQLVNTTARAERLAARFGAIVQTLPH 173

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVE--DILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
            +  I+ +G     N A + L G      +  R    +   +   S     L  I +   
Sbjct: 174 ALVFIDDDGSEAFVNGAAAALLGISPAVTEPARVSAAMHAMRARASEQEDALRTIATAVA 233

Query: 522 RQTLEKITLG-----STKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA-- 574
                +          +    +LS+     +   +        DI+       +L     
Sbjct: 234 HDREIRDVRLSLAATESAPRTVLSVSSTPTRERGTPGRLWLYIDITARHLALEQLEANNA 293

Query: 575 -----KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
                +  A+  +  KS FLA +SHE+RTP+  ++G + ++ +    P  +    EY   
Sbjct: 294 ALETARHAADAANEAKSRFLATMSHELRTPMNGVLGMAGLLLDMGLAPEPS----EYVET 349

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I  SG+ +L I+ND+LD SK+E+G   L  +P SL   V EA  LV + A +KR+ +   
Sbjct: 350 IRSSGDALLAIINDILDFSKLEAGMFELELQPFSLRSCVEEAFDLVAVSAAKKRLELALR 409

Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-------TSNEEVILRV 741
            A ++P  +  D+  ++Q+ +N+LSNAI FT  G +++I+           +   + L V
Sbjct: 410 IAEDVPWTVRGDITRLRQVIVNLLSNAIKFTDVG-EVVIAIACAPKIDCQRAGVRLHLSV 468

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
           RDTGVG+     +   + F Q+  S   +  GTGLGL +   +V    G+ ++ S    G
Sbjct: 469 RDTGVGIPAELHKSLFRSFSQLDASISRKYGGTGLGLAICARLVALMDGRIWVESEQGAG 528

Query: 802 TLIEIIF 808
                  
Sbjct: 529 ATFHFTI 535


>gi|42784659|ref|NP_981906.1| sensory box histidine kinase YycG [Bacillus cereus ATCC 10987]
 gi|42740591|gb|AAS44514.1| sensory box histidine kinase YycG [Bacillus cereus ATCC 10987]
          Length = 613

 Score =  314 bits (805), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 83/372 (22%), Positives = 158/372 (42%), Gaps = 25/372 (6%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +  +   E E  +L S+L   +DG+   +R+G I+  N    K+     E  L +     
Sbjct: 258 QQARSSTESERRKLSSVLSHMTDGVIATDRKGDIILLNDPAEKMLNVSRETALDQSVLEV 317

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
           L       ++H   E  S+ L  +                  +I K+   ++     ++D
Sbjct: 318 LGIQEEFTLDHLYEEPDSVLLDFSTRNEPYILRAS-----FSVIQKETGKANGLIAVLYD 372

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           ++                E+    + +F+A VSHE+RTPLT +  + E + +  +     
Sbjct: 373 VT--------------EQERIERERREFVANVSHELRTPLTTMRSYLEALTDGAWQDPNI 418

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
                +          ++ +VN LL +SK++S +  L  E +   +  +  I   +  + 
Sbjct: 419 APQ--FLTVTQEETERMIRLVNALLQLSKLDSTEHRLMKEWIDFTDFFNNIIDRFE-MSK 475

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV-IL 739
           E+ +  + SF+     I  D   + Q+  NI+SNA+ ++P GG +          E+  +
Sbjct: 476 EQNVSFKRSFSKKSRFIDMDTDKITQVLYNIISNALKYSPEGGTVT--YRLRDRGELLEI 533

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V D G+G+    ++K  + F ++  ++  +  GTGLGL +AK M++A+ G  +  S   
Sbjct: 534 SVSDQGMGIPKENVDKIFERFYRVDKARSRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEG 593

Query: 800 KGTLIEIIFPLY 811
           KGT I    P+ 
Sbjct: 594 KGTTIYFTLPMA 605


>gi|17232702|ref|NP_489250.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17134349|dbj|BAB76909.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 1558

 Score =  314 bits (805), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 118/736 (16%), Positives = 247/736 (33%), Gaps = 52/736 (7%)

Query: 92   HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNT--WYGKTTL 149
             G   + ++ L    G  + ++  M+  D++    ++ +      +  +    +  +   
Sbjct: 716  DGQFLQNNQALCDITGYSSEELSQMKFSDITHPDDVEADWVYAKQVLAREINGYSLEKRY 775

Query: 150  WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
               +GT   V ++L A  +++   E     G  I+          A    L +  + L  
Sbjct: 776  LRKDGTT--VWVNLTASAVWNEQGEPKYALG--IIEDINERKQAEAAQNFLVEASTLLAA 831

Query: 210  IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
                  ++               HL +       T      D  +K      + S +   
Sbjct: 832  SLDYEVALNNVA-----------HLAVPTIADWCTVDILQADWSIKRVAIACIDSAKLDT 880

Query: 270  PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
             E+  +      +         L+  S    E  +                   E     
Sbjct: 881  IEEIRYSYPPGTKGEHPFRDKLLKGESAFYPELPNSILVEMAKDERHLQLLQNLEMRSLM 940

Query: 330  PIPFF--VYSHGNLFYANPSFLLLTKYKSV---DDIEIAGGL----STLLDAPKLSDNNA 380
             +P +      G + +         K   +   +DI          + L    + +   A
Sbjct: 941  VVPLYSREQIFGVISFVTSISGRQFKQTDLALAEDIARRAATAIENARLYQETQQAKQAA 1000

Query: 381  IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
               +      ++  A+ +   T Q   +  +         +      + + G   + +  
Sbjct: 1001 ELAMSRMVRLQSITASLSEALTPQQVADVVVNQGLAALGASAGSVVLLTEGGTTLKIIQA 1060

Query: 441  RINKRKMEIEVMQLCSILEATSDGIAIINREGI-ILSTNRAVSKLFGYPVEDILRKPFTV 499
                  ++             +  IA   R G  I   N     +  +  +         
Sbjct: 1061 IGYPESVQDAWETFPL---TATVPIAETARTGEAIFLAN-----IEEFAAKYPQIANVPS 1112

Query: 500  FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH 559
                   + +   + +     +  +       + +++K +             C      
Sbjct: 1113 LTGNCAFACIPLIVEQQTIGVMALSFATAQKFNEEQQKFML-------TLGQQCAQAIAR 1165

Query: 560  DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
                  Q      +A+ IAE  +  K +FLA +SHE+RTPL  I+G++++++ + +    
Sbjct: 1166 -----SQLYEAEKNARAIAESTNRIKDEFLAVLSHELRTPLNPIMGWAKLLRTRTY---K 1217

Query: 620  NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
                 +    I+R+  L   +++DLLD+S+I  GK+NL+   V L   V   +  V+L A
Sbjct: 1218 EETIKQGLETIERNAKLQTQLIDDLLDVSRILRGKLNLNVCLVDLRNTVQAGLETVRLAA 1277

Query: 680  NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
              K I I T  ++   +++ D   ++Q+  N++SNA+ FTPS G++ +       +   +
Sbjct: 1278 EAKSIEIHTILSDEPVQVMGDGDRLQQVIWNLVSNAVKFTPSEGRVDVRLEQVGRD-AQI 1336

Query: 740  RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-P 798
            +V DTG G+T   L    + F Q          G GLGL +   +V+ + G     S   
Sbjct: 1337 QVIDTGKGITPEFLPYVFEYFRQADAKTTRVFGGLGLGLAIVHHLVELHGGTVVAESAGE 1396

Query: 799  AKGTLIEIIFPLYDTS 814
             +G    +  PL+ ++
Sbjct: 1397 DQGATFTVKLPLHKSA 1412



 Score =  123 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 52/577 (9%), Positives = 136/577 (23%), Gaps = 81/577 (14%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D        +E L    G    + IG  L +V           +  ++  +     +  
Sbjct: 278 LDTKLRYVYTNEALAAINGIPQSQHIGRTLREVLPEWATQLEPILQQVMATKEPLINQEV 337

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK------ 202
                 + ++    +   P+   + +  G    G+              + + +      
Sbjct: 338 CGVTYPSGVHRCSLVNYYPVCLPDGKLLGVGVTGL--DITERKQAEDALRYIAQTSNILS 395

Query: 203 ---------------KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH----------LRMK 237
                              L +        +             P              K
Sbjct: 396 SSLDYEQTLAKIAKISVPQLADWCSIDIINQDGSIRRLPIAHVDPAKAELARLFQEYAPK 455

Query: 238 NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE------------------DFHTIN 279
           +  +SL        + L     P      ++  E+                       + 
Sbjct: 456 SGSASLVAKVLQTGEPLLVADIPDSLLAAATQNEEHLDLVRQIGIKSLMFLPLIAHEQVL 515

Query: 280 LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET-------------V 326
                     G   N S  +                    +                  +
Sbjct: 516 GCITFVSAESGRSYNQSDLTLAKDIAYRAALAIENAQLYRDAHQALKHYAESLALLDALL 575

Query: 327 DKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
              P+   F+         N     +      + +              L          
Sbjct: 576 AGAPVAVCFLDKELRYIRINQVLADVNGLSIEEHLGRKF-------RDVLPKMAEQFEAQ 628

Query: 386 LYRSDRTCIAASARLHTIQWNRENSL--AMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
           L +   T         + +      +        +   +   + +    I  E   T+  
Sbjct: 629 LQQVLETGQPLLNLEVSGEALGRPEINSYWLGNYYPVYDSMGKTVGIGIILAEVTATKQV 688

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
           +  +     +  ++ +  + GI ++  +G  L  N+A+  + GY  E++ +  F+     
Sbjct: 689 EIALRESEERFRAMFDQAAVGITLVTLDGQFLQNNQALCDITGYSSEELSQMKFSDITHP 748

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMH 559
           +       Y  ++L+ ++            K+   + + +    +             + 
Sbjct: 749 DDVEADWVYAKQVLAREING-YSLEKRYLRKDGTTVWVNLTASAVWNEQGEPKYALGIIE 807

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLA--RVSH 594
           DI+E KQ +   +   + +   ++     +A   V+H
Sbjct: 808 DINERKQAEAAQNFLVEASTLLAASLDYEVALNNVAH 844



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/305 (13%), Positives = 93/305 (30%), Gaps = 28/305 (9%)

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
                     + E      +    I  F             +  +  Y+ V   E   G 
Sbjct: 114 QDVVNLQKLRQSEERFRLALSNSDIVVFQQDRDL------RYRWIHNYRGVASAEEIIGK 167

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
           S   +    +        +  +     I+    +  I         +   P     Q   
Sbjct: 168 SD--NELFPTSVAEKLTAIKQKVLEKDISVHEEVSVIFHGEVVYYDLLAEPLTINGQIQG 225

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQ-----------LCSILEATSDGIAIINREGIIL 475
                    E   + + K K++ ++ +           L + L ++   +A ++ +   +
Sbjct: 226 ITCAAVDITERKRSELEKAKLQRKLQKAIQQQDEYLALLNAWLASSPVALAFLDTKLRYV 285

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
            TN A++ + G P    + +     L     + +   L ++++      + +   G T  
Sbjct: 286 YTNEALAAINGIPQSQHIGRTLREVL-PEWATQLEPILQQVMATKEP-LINQEVCGVTYP 343

Query: 536 EKLLSLRII---IKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS--DF 588
             +    ++      LP        +T  DI+E KQ ++ L +  + +   SS       
Sbjct: 344 SGVHRCSLVNYYPVCLPDGKLLGVGVTGLDITERKQAEDALRYIAQTSNILSSSLDYEQT 403

Query: 589 LARVS 593
           LA+++
Sbjct: 404 LAKIA 408


>gi|289168018|ref|YP_003446287.1| histidine kinase [Streptococcus mitis B6]
 gi|288907585|emb|CBJ22422.1| histidine kinase [Streptococcus mitis B6]
          Length = 449

 Score =  314 bits (805), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 93/376 (24%), Positives = 168/376 (44%), Gaps = 33/376 (8%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           R+ +  +E E  +L SIL   +DG+   NR G I   N    K  G   ED+L K     
Sbjct: 83  RLTQENLEQESKRLNSILSYMTDGVLATNRRGQITMINDMAKKQLGVQKEDVLNKSILEL 142

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SL 556
           LE      +   +T+I         E +        + LSLR+    +   S +      
Sbjct: 143 LEIVDEYELRDLITQIP--------ELMIDSQDANGEYLSLRVRFALVRRESGFISGLVA 194

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            +HD +E ++E+ +                 F++ VSHE+RTPLT++  + E +     G
Sbjct: 195 VLHDTTEQEKEERERRL--------------FVSNVSHELRTPLTSVKSYLEAL---DEG 237

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV- 675
            L  P   ++        N ++ +V DLL +S+I++   +L  E ++    ++  ++   
Sbjct: 238 ALSEPVAPDFIKVSLDETNRMMRMVTDLLHLSRIDNATSHLDVELINFTAFITFILNRFD 297

Query: 676 --QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
             +    EK+  +   +      I  D   + Q+  NIL+NAI ++P GG+I ++   T 
Sbjct: 298 QIRGQDEEKKYELVRDYPITSVWIEIDTDKMTQVIDNILNNAIKYSPDGGKITVTMKTTD 357

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
           ++ + L + D G+G+   +L +    F ++  ++     GTGLGL +AK ++  + G  +
Sbjct: 358 DQMI-LSISDQGLGIPKQDLPRIFDRFYRVDRARSRAQGGTGLGLAIAKEIIKQHNGFIW 416

Query: 794 IFSTPAKGTLIEIIFP 809
             S   KG+   I+ P
Sbjct: 417 AKSEYGKGSTFTIVLP 432


>gi|167753652|ref|ZP_02425779.1| hypothetical protein ALIPUT_01932 [Alistipes putredinis DSM 17216]
 gi|167658277|gb|EDS02407.1| hypothetical protein ALIPUT_01932 [Alistipes putredinis DSM 17216]
          Length = 1057

 Score =  314 bits (805), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 101/515 (19%), Positives = 194/515 (37%), Gaps = 36/515 (6%)

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
                 D  E L     D  P+   +Y  +G L   N   L +   +  +D+        
Sbjct: 421 ETHEALDRSEKLLRNIYDNIPVGIELYDRNGLLVDLNNKDLEIFGIRDKEDVLGVD---- 476

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR------ENSLAMTFIPFEKAN 422
               P L +      V     +R   +  A     + N       +  L +        +
Sbjct: 477 FFKNPILDE-----EVWRRVRNREEFSFKAYYPFDRLNGYYVTSKQGRLEIYSSVCMLYD 531

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN---REGIILSTNR 479
                     I  ++ +      ++         +      G    +   +EG  +    
Sbjct: 532 AQGRLSNFFLINIDNTEINRAHSRIAEFESSFSLVSRFGKVGYCRFDLVSKEGYGV---P 588

Query: 480 AVSKLFGYPVEDILRKPF--TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
                 G   +  L +       +  +  + +   + ++ + ++      + + +   +K
Sbjct: 589 QWYYNLGEKEDTPLDQILGVYKHVNSSDRAEVLESIRQVKAGEIDSFSHDLRIDADGRQK 648

Query: 538 LLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
              + ++   L             +DI+E K+ +  L  AK  AE     KS FLA +SH
Sbjct: 649 WTRINVMRNPLNNDPSKIEMVCVNYDITELKETEKNLIEAKNKAEVSDRLKSAFLANMSH 708

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           EIRTPL AI+GFS +I              EY   +  +  L+L +++D+LD+SKIE+G 
Sbjct: 709 EIRTPLNAIVGFSNLIAETE----DPDERREYVAIVQENNELLLKLISDILDLSKIEAGT 764

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714
           +  +     +++   E +  + L   +K + +R        R++ D   + Q+ +N ++N
Sbjct: 765 LEFNDVEFDVNQMCQEIVRSLSLKVLDKPVELRFGDHLPECRLVGDKTRITQVLINFINN 824

Query: 715 AIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           A+ FT  G  + +         +   V DTG G+   E E   + F ++ +      +GT
Sbjct: 825 ALKFTREGS-VTLGYRCDDGMMLTFYVEDTGTGIPEQEQESVFERFVKLNSF----VQGT 879

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GLGL ++K++V+   G+  + S P KG+      P
Sbjct: 880 GLGLAISKSIVEQMGGRIGLNSEPGKGSCFWFTHP 914



 Score = 55.4 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/297 (7%), Positives = 78/297 (26%), Gaps = 44/297 (14%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYS----------HGNLFYANPSFLLLTKYKSVD 358
                      +         P+ +  +              +  +N +   +      D
Sbjct: 294 QRSKREAQIERDYLQNLYRYMPLGYVRFRMIYDKTGTPVDYKVLDSNYAAEKIIGKSQAD 353

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
            +         L +    ++      +  +  +        +  +  +      + +   
Sbjct: 354 YVGR-------LASELEIEDMPEYLKVFAKVLQVEQHVEKEV-RLLASGRYVHVVMYSTT 405

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
            +            +  +  +       ++     L +I +    GI + +R G+++  N
Sbjct: 406 PEE--------VICLLSDMTEMYETHEALDRSEKLLRNIYDNIPVGIELYDRNGLLVDLN 457

Query: 479 RAVSKLFGY-PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
               ++FG    ED+L   F          +++  +   +      + +           
Sbjct: 458 NKDLEIFGIRDKEDVLGVDFFK------NPILDEEVWRRVRNREEFSFKAYYPFDRLNGY 511

Query: 538 LLS-------LRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
            ++       +   +  L  +      + L   D +E  +  ++++  +      S 
Sbjct: 512 YVTSKQGRLEIYSSVCMLYDAQGRLSNFFLINIDNTEINRAHSRIAEFESSFSLVSR 568


>gi|110597007|ref|ZP_01385296.1| PAS:Response regulator receiver:GAF:ATP-binding region,
            ATPase-like:Histidine kinase A-like [Chlorobium
            ferrooxidans DSM 13031]
 gi|110341198|gb|EAT59663.1| PAS:Response regulator receiver:GAF:ATP-binding region,
            ATPase-like:Histidine kinase A-like [Chlorobium
            ferrooxidans DSM 13031]
          Length = 1407

 Score =  314 bits (805), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 90/567 (15%), Positives = 198/567 (34%), Gaps = 77/567 (13%)

Query: 306  RNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAG 364
            R+                  V+      + ++   N  Y +P +  +  Y+  +      
Sbjct: 560  RSVRRREQELILSREQYMLAVNGSNDGIWDWNIRDNSLYLSPRWKKMIGYEDHEL----P 615

Query: 365  GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
             +    +     D+       L R  +  +   +     +      L +        ++ 
Sbjct: 616  NIYATFEERVHPDDLPEYKNFLERYLKGEVPVFSVEFRFRHRNGEYLWLLAKGEALRDKD 675

Query: 425  PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA---IINREGIILSTNRAV 481
                   G   +   ++  + +++        +L   + G     I + +  I    ++ 
Sbjct: 676  GLPYRMAGSHSDISGSKKIEEELKRRSA-FQLVLMDLAIGFINKPIEDLDNSI----KSA 730

Query: 482  SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK------ITLGSTKE 535
              L G          F+   E  + S  + +    ++ +++             + S ++
Sbjct: 731  LALVGEFARVDRVYLFSYDFENRSMSNTHEWCAPGINAEIQNLQNLPTAAMPELVASHRQ 790

Query: 536  EKLLSL----------------------RIIIKKLPFSS---CYSL-------------- 556
             +++ +                       +I   L +      +                
Sbjct: 791  GRVVHIPDVKEMPEESAFRALLEPQGIQSLITIPLNYGEQCFGFVGFDAVRSLKIWADDD 850

Query: 557  ---------TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
                        +     + +  L  A+  +E  +  KS+FLA +SHEIRTP+  +IG +
Sbjct: 851  LSLLRVLAELFTNAEVRHRHETALVEARYASESANRAKSEFLANMSHEIRTPMNGVIGMT 910

Query: 608  EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
             ++ +       +     YA  +  S + +L ++ND+LD SKIE+GK  L      L   
Sbjct: 911  GLLLDTSL----SDEQRGYAQAVMESADFLLGLINDILDFSKIEAGKFELEMLDFDLRNV 966

Query: 668  VSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQII 726
            + +  S++ + A +K +    + +  + P +  D   + Q+  N+  NAI FT  G ++ 
Sbjct: 967  LDDVSSIMAVRARDKELEFICAASPEVTPFLRGDPGRLYQVLNNLAGNAIKFTHQG-EVA 1025

Query: 727  ISTTH----TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
            +S          + +   VRDTG+G+   ++      F Q+  S   +  GTGLGL +++
Sbjct: 1026 VSVALVSGSAQEDLLRFSVRDTGIGIPEQKIAILFSSFTQVDASTTRKFGGTGLGLAISR 1085

Query: 783  AMVDANMGKFYIFSTPAKGTLIEIIFP 809
             +V+   G+  + S   +G+      P
Sbjct: 1086 QLVELMGGEIGVSSRENEGSEFWFTIP 1112



 Score = 68.1 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 30/247 (12%), Positives = 67/247 (27%), Gaps = 16/247 (6%)

Query: 340 NLFYANPSFLLLTKYKSVDDIEIAG------GLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393
                N     +  + S+             GLS  +          +            
Sbjct: 453 RYRDWNRFDSDVLVFSSLGRFPGEFNAVLSRGLSESMQTDWEGRPWRVTAKSFKEVSGRI 512

Query: 394 IAASARLHTIQ-WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT--RINKRKMEIE 450
                 +  I  +N      ++         F        +     D   R  ++++ + 
Sbjct: 513 TGKIIIMQDISAYNDRVYRLVSIAVISVIVIFTFLYSFLVVVLSRTDRSVRRREQELILS 572

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI--LRKPFTVFLEQNTPSV 508
             Q    +  ++DGI   N     L  +    K+ GY   ++  +   F   +  +    
Sbjct: 573 REQYMLAVNGSNDGIWDWNIRDNSLYLSPRWKKMIGYEDHELPNIYATFEERVHPDDLPE 632

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SLTMHDISEW 564
             ++L   L  ++            +  + L L    + L          + +  DIS  
Sbjct: 633 YKNFLERYLKGEVP-VFSVEFRFRHRNGEYLWLLAKGEALRDKDGLPYRMAGSHSDISGS 691

Query: 565 KQEKNKL 571
           K+ + +L
Sbjct: 692 KKIEEEL 698



 Score = 45.8 bits (107), Expect = 0.033,   Method: Composition-based stats.
 Identities = 37/407 (9%), Positives = 108/407 (26%), Gaps = 36/407 (8%)

Query: 96  KEISEELPKTIGNYAFKM--IGMRLCDVSDILHIDPNNHIGDLLKRQN--TWYGKTTLWP 151
             +S    K IG    ++  I     +      +    +  +   +     +  +     
Sbjct: 597 LYLSPRWKKMIGYEDHELPNIYATFEERVHPDDLPEYKNFLERYLKGEVPVFSVEFRFRH 656

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
             G   Y+ +      +  ++     +R  G               KR       L ++ 
Sbjct: 657 RNGE--YLWLLAKGEALRDKDG--LPYRMAGSHSDISGSKKIEEELKRRSAFQLVLMDLA 712

Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271
            G  +   E  D  S +S    +    +V  +  +    ++   +  +       ++   
Sbjct: 713 IGFINKPIEDLDN-SIKSALALVGEFARVDRVYLFSYDFENRSMSNTHEWCAPGINA--- 768

Query: 272 QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI 331
             +   +                  +              +             +   P+
Sbjct: 769 --EIQNLQNLPTAAMPELVASHRQGRVVHIPDVKEMPEESAFRALLEPQGIQSLI-TIPL 825

Query: 332 PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR 391
            +     G + +     L +     +  +     L+ L    ++   +    V    +  
Sbjct: 826 NYGEQCFGFVGFDAVRSLKIWADDDLSLLR---VLAELFTNAEVRHRHETALVEARYASE 882

Query: 392 TCIAASARL-----HTIQWN-----RENSLAMTFIPFEKANQFPENMPQ-----NGIEPE 436
           +   A +       H I+           L +     ++   + + + +      G+  +
Sbjct: 883 SANRAKSEFLANMSHEIRTPMNGVIGMTGLLLDTSLSDEQRGYAQAVMESADFLLGLIND 942

Query: 437 DVDTRINKR---KMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
            +D    +    ++E+    L ++L+  S  +A+  R+  +     A
Sbjct: 943 ILDFSKIEAGKFELEMLDFDLRNVLDDVSSIMAVRARDKELEFICAA 989


>gi|163794299|ref|ZP_02188271.1| PAS/PAC Sensor Signal Transduction Histidine Kinase [alpha
           proteobacterium BAL199]
 gi|159180467|gb|EDP64988.1| PAS/PAC Sensor Signal Transduction Histidine Kinase [alpha
           proteobacterium BAL199]
          Length = 637

 Score =  314 bits (805), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 135/603 (22%), Positives = 239/603 (39%), Gaps = 24/603 (3%)

Query: 225 FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYT 284
            +        R+ +  +   E +AH         +  +T         +       ++  
Sbjct: 36  IAVAVWDTEDRLVHTNARFRELFAHTGPFDDRPDFATITERTRRFFRDDPVIEAAADERL 95

Query: 285 KKQYFGTLQNNSKESFEYLSHRNHPSLS-----------AYFDEGENLTPETVDKCPIPF 333
            ++  G            +   +                +     E          P   
Sbjct: 96  HRRKRGNPTGEFLSVENRVIRFHDIQTPDGGAVTIYEDISRERSVEATLSALAKTLPGAI 155

Query: 334 FVYSHGNL----FYANPSFLLLTKYKSVDDIEIAG-GLSTLLDAPKLSDNNAIKPVMLYR 388
           F    G       Y +   L LT   S   I   G  L+ LL  P            L  
Sbjct: 156 FELRRGAGDIACTYMSDRILELTGTPSEAFIADWGCALADLLAQPDTHRFTEG----LNT 211

Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
           S       + RL  +     ++  +      +       +  +GI  +   +  +   + 
Sbjct: 212 SAEQLDELNIRL-PLARPAGSTRWLRVRAAARRLTDGTTL-WSGIFTDATLSVESTAALA 269

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
               +   I++  SD +   N  G I   +    ++ G P + I+ +        +    
Sbjct: 270 QSERRFRDIIDIASDWVWETNAAGQITFVSDRFVEISGIPTDRIVGRTRRELPFYDWDDP 329

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQ 566
               L E L         +I +G+   ++ +SLR             Y  T  D++   +
Sbjct: 330 GLQALEEDLRERRPIHGRRIRIGTPSGDRQVSLRGRPILGDDGTFQGYRGTGTDVTREHE 389

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
              +L  A   A+  +  KS FLA +SH++RTPL AI+GFSE+++ + FGP+G+PRY EY
Sbjct: 390 YVQRLHDAMVEAQAANRAKSRFLANMSHDLRTPLNAIMGFSEIMQAEVFGPVGHPRYAEY 449

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
           +  I  S   +L++++DLLD+++IESG++ +  EP+ + + V EAI LV      + + +
Sbjct: 450 SRDIRTSAVHLLELIDDLLDLARIESGRIEMVKEPLVIRDIVDEAIMLVAPRCEARGVSL 509

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
             + A + P + +D R+VKQI +N+L+NA  FT  GG I++     S   V + V D G 
Sbjct: 510 TVTGAADAPVVHSDGRAVKQILVNLLTNASKFTERGGSIVVDIKPDSTGNVWVSVCDDGC 569

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+    +++  KPF Q   +     +G GLGL + +++ +A   KF I S   +GT   +
Sbjct: 570 GIPTAMIDEVTKPFVQASETASRPRDGVGLGLAIVRSLSEAIGAKFQIESRIGEGTTARV 629

Query: 807 IFP 809
             P
Sbjct: 630 RLP 632



 Score = 71.2 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 34/288 (11%), Positives = 74/288 (25%), Gaps = 18/288 (6%)

Query: 57  QNQESVSNTNYLDSENTFVF-DPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIG 115
            +      +    +++   F D I     + W  +A G +  +S+   +  G    +++G
Sbjct: 256 TDATLSVESTAALAQSERRFRDIIDIASDWVWETNAAGQITFVSDRFVEISGIPTDRIVG 315

Query: 116 MRLCDVSDILHIDPNN-HIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNRE 174
               ++      DP    + + L+ +   +G      I   +    + L   PI   +  
Sbjct: 316 RTRRELPFYDWDDPGLQALEEDLRERRPIHG--RRIRIGTPSGDRQVSLRGRPILGDDGT 373

Query: 175 FSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL 234
           F G+RG G       +++          +    +  K    +                  
Sbjct: 374 FQGYRGTGT--DVTREHEYVQRLHDAMVEAQAANRAKSRFLANMSHDLRTPLNAIMGFSE 431

Query: 235 RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294
            M+ +V        H      +            L +         +   +         
Sbjct: 432 IMQAEVFG---PVGHPRYAEYSRDIRTSAVHLLELIDDLLDLARIESGRIEM-------- 480

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLF 342
             KE        +   +             TV        V+S G   
Sbjct: 481 -VKEPLVIRDIVDEAIMLVAPRCEARGVSLTVTGAADAPVVHSDGRAV 527



 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/291 (11%), Positives = 67/291 (23%), Gaps = 32/291 (10%)

Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYK-- 355
                +     +  A   E        +D   I   V+     L + N  F  L  +   
Sbjct: 4   RPSPDARVLLGTDGAEAGEVWPRLLFALDHTQIAVAVWDTEDRLVHTNARFRELFAHTGP 63

Query: 356 --SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
                D       +            A    +  R                      L++
Sbjct: 64  FDDRPDFATITERTRRFFRDDPVIEAAADERLHRRKRGNPT-------------GEFLSV 110

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR-EG 472
                   +    +     I  +    R  +         L ++ +     I  + R  G
Sbjct: 111 ENRVIRFHDIQTPDGGAVTIYEDISRERSVEAT-------LSALAKTLPGAIFELRRGAG 163

Query: 473 II--LSTNRAVSKLFGYPVE---DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
            I     +  + +L G P E             L Q         L           +  
Sbjct: 164 DIACTYMSDRILELTGTPSEAFIADWGCALADLLAQPDTHRFTEGLNTSAEQLDELNIRL 223

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSC-YSLTMHDISEWKQEKNKLSHAKKI 577
                    + L +R   ++L   +  +S    D +   +    L+ +++ 
Sbjct: 224 PLARPAGSTRWLRVRAAARRLTDGTTLWSGIFTDATLSVESTAALAQSERR 274


>gi|327182634|gb|AEA31081.1| putative histidine kinase [Lactobacillus amylovorus GRL 1118]
          Length = 618

 Score =  314 bits (805), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 86/396 (21%), Positives = 170/396 (42%), Gaps = 33/396 (8%)

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
           ++  +           ++    +   + E  +L S+L   SDG+   +R G +   N+  
Sbjct: 235 DELGQLGRAFNTLSVRIERSQEES--DSERRRLDSVLSHMSDGVLATDRHGNVSVVNQMA 292

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
                   ED++ KP    L     S       +++S      +        +     S 
Sbjct: 293 LNFLNVKEEDVINKPIAEVLGLKDTSS-----QDLISSQKEIVVTIDPNTRDEMILHASF 347

Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
            +I +   F S     +HD++E ++ ++               +  F++ VSHE+RTPLT
Sbjct: 348 SLIKRVTGFVSGSVCVLHDVTEQQKNED--------------SQKQFVSNVSHELRTPLT 393

Query: 602 AIIGFSEVIKNQRFGPLGNPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
           ++  + E +     G   +P    ++     +  + ++ ++NDLL +S+++ G   +  E
Sbjct: 394 SLQAYIEALNE---GAWKDPNIAPKFLEVTQQETSRMIRMINDLLSLSRMDRGVSKMDLE 450

Query: 661 PVSLDEAVSEAISLVQLYANEKRI-------LIRTSFANNIPRILADLRSVKQIALNILS 713
            V+L++ V+  ++   +     +         I+    N    +  D   + Q+  NI++
Sbjct: 451 FVNLNDFVNHILNRFDMIVKTDKNNDKKKKYTIKRELGNQALWVEIDTDKMMQVIDNIMN 510

Query: 714 NAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
           NAI ++P G  I +  T   N  VIL + D G+G+   +L K    F ++  ++     G
Sbjct: 511 NAIKYSPDGSVITVRLTQNKN-HVILSISDQGLGIPRKDLGKIFDRFYRVDKARSRAQGG 569

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           TGLGL +AK +V+A+ G+ +  S+  KG+   I  P
Sbjct: 570 TGLGLAIAKEIVEAHHGRIWADSSEGKGSTFYISLP 605


>gi|148251707|ref|YP_001236292.1| putative sensor histidine kinase [Bradyrhizobium sp. BTAi1]
 gi|146403880|gb|ABQ32386.1| Putative sensor histidine kinase [Bradyrhizobium sp. BTAi1]
          Length = 835

 Score =  314 bits (805), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 131/696 (18%), Positives = 240/696 (34%), Gaps = 39/696 (5%)

Query: 127 IDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN----REFSGFRGFG 182
            +P   +   +       G+  L  +  ++ +  I+     I  +     RE SG R   
Sbjct: 155 PEPALQLDRAVDALR-EAGEGFLLHLTSSHGHA-IEAMGRAIGGQAIVRIRELSGLR--- 209

Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS 242
                              +    L           +    +               V  
Sbjct: 210 --RELAETQLRFKALGEETESLRALAAALPWPVWARQANGALTYVNPAYARAADARDVPD 267

Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302
                    D                   +    T    +      F     ++  +   
Sbjct: 268 AISRNLELLDSADRTDLQRALGAAGRFEGRLPIVTGGERRMHDVHAFTLSNGSAGVA--- 324

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIE 361
           +      +L             T+D+      V+     L + N S+  L    S     
Sbjct: 325 IDASEAAALRTALVRMAEAHRRTLDQLSSGVAVFDGQRRLSFYNDSYRRLWDLDSA---- 380

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA---RLHTIQWNRENSLAMTFIPF 418
                       +  D++ +  +   R         A   +LH      E +    F+P 
Sbjct: 381 --------FLDSQPDDSSVLDRLRAARKLPEQADFRAWKAKLHEAYRAVEAAKDTWFLPD 432

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL----CSILEATSDGIAIINREGII 474
            +A          G      D       +      L       L++ ++G+A+    G +
Sbjct: 433 GRALSVVTTPNPEGGVTYLFDDVTESFALARRFDGLIRVQRETLDSLAEGVAVFGSNGRV 492

Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT-EILSLDLRQTLEKITLGST 533
              N A +K++    + +   P    +E    S+ +  +    +   +     ++ +   
Sbjct: 493 ELFNPAFAKMWRLSPDQLREHPHIDTVESWCRSLYDDAVAWRTIREAITSIENRLDIALK 552

Query: 534 KEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
            E K  S+   + +        LT  DI++ +  +  L  + +  E     K DF+  VS
Sbjct: 553 LERKDGSVLDCMSRPLPDGATMLTFQDITDTENVERALRESNEALEAAGQMKIDFVHHVS 612

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           +E+R PLT IIGF+  + +   GPL  P+  EY +Y+ +S N +L + N++LD++ I++G
Sbjct: 613 YELRAPLTTIIGFAHFLSDPSTGPLT-PKQAEYLDYVTKSTNALLALTNNILDLATIDAG 671

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713
            M L   PV   +A+  A   VQ      RI ++     N+   + D R V Q+  N+L+
Sbjct: 672 AMKLELGPVDAAKAIEAAAEGVQDRLATDRIRLKVQVDPNVGTFVGDERRVVQVLYNLLA 731

Query: 714 NAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
           NA+ F+P    +++S   T +  V   V D+G G+     ++    F  +  SQ  R  G
Sbjct: 732 NAVGFSPQDSTVLVSARRTDH-SVAFSVTDSGPGIPPDLKDQMFDWF--VSRSQGSRHRG 788

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            GLGL L ++ V+ + GK  + S   KGT +   FP
Sbjct: 789 AGLGLSLVRSFVELHGGKVRMDSVVGKGTTVTCDFP 824



 Score = 76.2 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 49/442 (11%), Positives = 105/442 (23%), Gaps = 49/442 (11%)

Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH 233
              GF     V + R          RL    + L      + ++   +  I        H
Sbjct: 67  ALLGFSVVAAVALVRTRLAAARKEARLRADVAALQLQADRYRALLFAEPQILIAWPAGGH 126

Query: 234 LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTK-------- 285
                ++S  T     +D   +   +      E +L        +               
Sbjct: 127 R---PQISGDTAMLVPQDQPQRILAFGSWLPPEPALQLDRAVDALREAGEGFLLHLTSSH 183

Query: 286 ----KQYFGTLQNNSKESFEYLSHRNHPSLSAYFD-----EGENLTPETVDKCPIPFFV- 335
               +     +   +      LS                 E            P P +  
Sbjct: 184 GHAIEAMGRAIGGQAIVRIRELSGLRRELAETQLRFKALGEETESLRALAAALPWPVWAR 243

Query: 336 YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIA 395
            ++G L Y NP++      + V D         LLD+   +D        L R+      
Sbjct: 244 QANGALTYVNPAYARAADARDVPD--AISRNLELLDSADRTD--------LQRALGAAGR 293

Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
              RL  +         +        +                  R+ +           
Sbjct: 294 FEGRLPIVTGGERRMHDVHAFTLSNGSAGVAIDASEAAALRTALVRMAEAH--------R 345

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN----- 510
             L+  S G+A+ + +  +   N +  +L+      +  +P    +     +        
Sbjct: 346 RTLDQLSSGVAVFDGQRRLSFYNDSYRRLWDLDSAFLDSQPDDSSVLDRLRAARKLPEQA 405

Query: 511 --HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568
                   L    R            + + LS+             +    D++E     
Sbjct: 406 DFRAWKAKLHEAYRAVEAAKDTWFLPDGRALSVVTTPNP---EGGVTYLFDDVTESFALA 462

Query: 569 NKLSHAKKIAEKESSHKSDFLA 590
            +     ++  +     ++ +A
Sbjct: 463 RRFDGLIRVQRETLDSLAEGVA 484



 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/383 (12%), Positives = 96/383 (25%), Gaps = 35/383 (9%)

Query: 86  TWNIDAHGYLKEISE-ELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144
            W   A+G L  ++               I   L  +      D    +   L     + 
Sbjct: 240 VWARQANGALTYVNPAYARAADARDVPDAISRNLELLDSADRTD----LQRALGAAGRFE 295

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
           G     PI         D+ A  + +      G  G  I          R    R+ +  
Sbjct: 296 G---RLPIVTGGERRMHDVHAFTLSN------GSAGVAI--DASEAAALRTALVRMAEAH 344

Query: 205 SHLHEIKKGHSSVEK---------EKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255
               +      +V           + Y               +  S L    A +    +
Sbjct: 345 RRTLDQLSSGVAVFDGQRRLSFYNDSYRRLWDLDSAFLDSQPDDSSVLDRLRAARKLPEQ 404

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ-YFGTLQNNSKESFEYLSHRNHPSLSAY 314
            +          +    E           +      T       ++ +       +L+  
Sbjct: 405 ADFRAWKAKLHEAYRAVEAAKDTWFLPDGRALSVVTTPNPEGGVTYLFDDVTESFALARR 464

Query: 315 FDEGENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
           FD    +  ET+D       V+ S+G +   NP+F  + +    D +     + T+    
Sbjct: 465 FDGLIRVQRETLDSLAEGVAVFGSNGRVELFNPAFAKMWRLSP-DQLREHPHIDTVESWC 523

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
           +   ++A+    +  +  +          ++    + L     P                
Sbjct: 524 RSLYDDAVAWRTIREAITSIENRLDIALKLERKDGSVLDCMSRPLPDGA-------TMLT 576

Query: 434 EPEDVDTRINKRKMEIEVMQLCS 456
             +  DT   +R +      L +
Sbjct: 577 FQDITDTENVERALRESNEALEA 599


>gi|228911304|ref|ZP_04075108.1| hypothetical protein bthur0013_54420 [Bacillus thuringiensis IBL
           200]
 gi|228848322|gb|EEM93172.1| hypothetical protein bthur0013_54420 [Bacillus thuringiensis IBL
           200]
          Length = 588

 Score =  314 bits (805), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 83/372 (22%), Positives = 158/372 (42%), Gaps = 25/372 (6%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +  +   E E  +L S+L   +DG+   +R+G I+  N    K+     E  L +     
Sbjct: 233 QQARSSTESERRKLSSVLSHMTDGVIATDRKGDIILLNDPAEKMLNVSRETALDQSVLEV 292

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
           L       ++H   E  S+ L  +                  +I K+   ++     ++D
Sbjct: 293 LGIQEEFTLDHLYEEPDSVLLDFSTRNEPYILRAS-----FSVIQKETGKANGLIAVLYD 347

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           ++                E+    + +F+A VSHE+RTPLT +  + E + +  +     
Sbjct: 348 VT--------------EQERIERERREFVANVSHELRTPLTTMRSYLEALTDGAWQDPNI 393

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
                +          ++ +VN LL +SK++S +  L  E V   +  +  I   +  + 
Sbjct: 394 APQ--FLTVTQEETERMIRLVNALLQLSKLDSTEHRLMKEWVDFTDFFNNVIDRFE-MSK 450

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV-IL 739
           E+ +  + SF+     I  D   + Q+  NI+SNA+ ++P GG +          ++  +
Sbjct: 451 EQNVSFKRSFSKKSRFIDMDTDKITQVLYNIISNALKYSPEGGTVT--YRLRDRGDLLEI 508

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V D G+G+    ++K  + F ++  ++  +  GTGLGL +AK M++A+ G  +  S   
Sbjct: 509 SVSDQGMGIPKENVDKIFERFYRVDKARSRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEG 568

Query: 800 KGTLIEIIFPLY 811
           KGT I    P+ 
Sbjct: 569 KGTTIYFTLPMA 580


>gi|91792026|ref|YP_561677.1| ATP-binding region, ATPase-like protein [Shewanella denitrificans
           OS217]
 gi|91714028|gb|ABE53954.1| ATP-binding region, ATPase-like protein [Shewanella denitrificans
           OS217]
          Length = 853

 Score =  314 bits (805), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 79/250 (31%), Positives = 139/250 (55%), Gaps = 6/250 (2%)

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           +I+  KQ + +L + +  AE+ +  KSDFLA +SHEIRTP+ AIIGF +++         
Sbjct: 252 EIAVRKQTEQELINMRDSAEQANRSKSDFLANMSHEIRTPMNAIIGFVDIVLEGDL---- 307

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
           + +  ++   +  S   + +++ND+LD++K+E+GK+ L   P S+ + + + I   +L A
Sbjct: 308 DQKQSKHLMTVRNSAKDLHNLLNDILDVAKLEAGKVELESAPFSVKKLLGQVIKTFELKA 367

Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738
            +K ++     A ++P + L D   +KQ+ +N++ NAI FT SG  I I+    + E++ 
Sbjct: 368 KDKGLVFIQRIAEDLPAQFLGDALRLKQVLMNLIGNAIKFTASGS-ITIAVEQINQEQLQ 426

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
             +RDTG+G+   +LE   + F Q   S   +  GTGLG  ++K +V+   GK ++ S  
Sbjct: 427 FIIRDTGIGIAKDKLEHIFESFTQADTSTSRKYGGTGLGTTISKRLVELMGGKIWLESDE 486

Query: 799 AKGTLIEIIF 808
             GT      
Sbjct: 487 GVGTTFYFTL 496


>gi|49482272|ref|YP_039496.1| sensor kinase protein [Staphylococcus aureus subsp. aureus MRSA252]
 gi|282907066|ref|ZP_06314914.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282910045|ref|ZP_06317853.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282912293|ref|ZP_06320089.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|283959503|ref|ZP_06376944.1| sensory box histidine kinase VicK [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|295429316|ref|ZP_06821938.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297589182|ref|ZP_06947823.1| sensor histidine kinase VicK [Staphylococcus aureus subsp. aureus
           MN8]
 gi|81652064|sp|Q6GKS6|WALK_STAAR RecName: Full=Sensor protein kinase walK
 gi|49240401|emb|CAG39047.1| sensor kinase protein [Staphylococcus aureus subsp. aureus MRSA252]
 gi|282323989|gb|EFB54305.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282326111|gb|EFB56416.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282329965|gb|EFB59486.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|283789095|gb|EFC27922.1| sensory box histidine kinase VicK [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|295127075|gb|EFG56719.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297577693|gb|EFH96406.1| sensor histidine kinase VicK [Staphylococcus aureus subsp. aureus
           MN8]
 gi|312436840|gb|ADQ75911.1| sensor histidine kinase [Staphylococcus aureus subsp. aureus TCH60]
 gi|315195245|gb|EFU25633.1| sensor kinase protein [Staphylococcus aureus subsp. aureus CGS00]
          Length = 608

 Score =  314 bits (805), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 79/388 (20%), Positives = 171/388 (44%), Gaps = 29/388 (7%)

Query: 426 ENMPQNGIEPEDVDTRINKRKM--EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           + + +  +   ++  R+ + +   E E  +L S++   SDGI   +R G I   N    K
Sbjct: 235 DEIGELALAFNNLSKRVQEAQANTESEKRRLDSVITHMSDGIIATDRRGRIRIVNDMALK 294

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           + G   EDI+       L       +        S  L    E+  +        ++   
Sbjct: 295 MLGMAKEDIIGYYMLSVLSLEDEFKLEEIQENNDSFLLDLNEEEGLIAR------VNFST 348

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
           I+++  F + Y   +HD++E +Q + +              + +F+A VSHE+RTPLT++
Sbjct: 349 IVQETGFVTGYIAVLHDVTEQQQVERE--------------RREFVANVSHELRTPLTSM 394

Query: 604 IGFSEVIKNQRFGPLGNPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
             + E ++    G   +     ++ +        ++ +VNDLL +SK+++    ++ E +
Sbjct: 395 NSYIEALEE---GAWKDEELAPQFLSVTREETERMIRLVNDLLQLSKMDNESDQINKEII 451

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
             +  +++ I+  +   + K                 D   + Q+  N+++NA+ ++   
Sbjct: 452 DFNMFINKIIN--RHEMSTKDTTFIRDIPKKTIFTEFDPDKMTQVFDNVITNAMKYSRGD 509

Query: 723 GQIIISTTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
            ++            + +R++D G+G+   +++K    F ++  ++  +  GTGLGL ++
Sbjct: 510 KRVEFHVKQNPLYNRMTIRIKDNGIGIPINKVDKIFDRFYRVDKARTRKMGGTGLGLAIS 569

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           K +V+A+ G+ +  S   +GT I I  P
Sbjct: 570 KEIVEAHNGRIWANSVEGQGTSIFITLP 597


>gi|83646376|ref|YP_434811.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83634419|gb|ABC30386.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 842

 Score =  314 bits (805), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 79/270 (29%), Positives = 140/270 (51%), Gaps = 12/270 (4%)

Query: 545 IKKLPFSSCYSL---TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
             +               ++ E K+   +    K+ AE+ +  KS+FLAR+SHEIRTP+ 
Sbjct: 411 AVRSRDEVGRLAESFIFMEV-ELKKNIKEACREKEAAEQANQAKSEFLARMSHEIRTPMN 469

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
            ++G + ++ +       + +  +Y + I  SG  +L+I+ND+LD SKIE+GK++L   P
Sbjct: 470 GVLGMASILADTPL----SEKQRKYLDTIVSSGESLLNIINDILDFSKIEAGKLDLDNHP 525

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTP 720
             L E +S    +    A+ K I +  + ++ IP  ++ D   ++QI  N++ NA+ FT 
Sbjct: 526 FKLSELLSYLTDIFSPRAHSKNIELICAISDGIPETLIGDSGRLRQILTNLVGNALKFTQ 585

Query: 721 SGG-QIIISTTHTS--NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
            G  QII+  +     N ++ + V DTG+G+   + +K  + F Q   S      GTGLG
Sbjct: 586 QGSIQIIVEISDEDARNMKLKISVIDTGIGIPLGKQQKIFESFSQADGSTTRTYGGTGLG 645

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           L ++K++V+   G+  + S P +G+     
Sbjct: 646 LSISKSLVELMGGELGVESRPGEGSSFWFS 675


>gi|322372854|ref|ZP_08047390.1| sensory box histidine kinase VicK [Streptococcus sp. C150]
 gi|321277896|gb|EFX54965.1| sensory box histidine kinase VicK [Streptococcus sp. C150]
          Length = 446

 Score =  314 bits (805), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 85/378 (22%), Positives = 160/378 (42%), Gaps = 35/378 (9%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           R+    +  E  +L S+L   SDG+   NR G I   N    +L     E   +      
Sbjct: 82  RLTHENLAQEKNRLSSVLSYMSDGVIATNRRGQITMINSTAKRLLNIDRETATQMSILDL 141

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SL 556
           L+  +P   +  L         +T E         ++ ++LR+    +   S +      
Sbjct: 142 LDGESPYTYSELL--------SKTPEIHLSRRDANDEFVTLRVNFALIRKESGFISGLVA 193

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            +HD +E ++E+ +                 F++ VSHE+RTPLT++  + E +     G
Sbjct: 194 VIHDATEQEKEERERRL--------------FVSNVSHELRTPLTSVKSYLEAL---DDG 236

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
            L       +        N ++ +++DLL +S I++   +L  E  +    ++  ++   
Sbjct: 237 ALNEEIAPNFIKVSLDETNRMMRMISDLLALSHIDNKSTHLDVEMTNFTAFMTYILNRFD 296

Query: 677 LYANE-----KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
              ++     K   I   +  N   +  D   + Q+  NIL+NAI ++P GG+I +S   
Sbjct: 297 QIKSQENNTGKDYEIIRDYPVNSIWVEIDTDKMTQVVDNILNNAIKYSPDGGKITVSMKT 356

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
           T   ++I+ + D G+G+   +L      F ++  ++     GTGLGL +AK ++  + G 
Sbjct: 357 TD-AQLIVSISDQGLGIPKKDLPLIFDRFYRVDKARSRAQGGTGLGLSIAKEIIKQHNGF 415

Query: 792 FYIFSTPAKGTLIEIIFP 809
            +  S   KG+   I+ P
Sbjct: 416 IWAKSEYGKGSTFTIVLP 433


>gi|303239891|ref|ZP_07326414.1| integral membrane sensor signal transduction histidine kinase
           [Acetivibrio cellulolyticus CD2]
 gi|302592601|gb|EFL62326.1| integral membrane sensor signal transduction histidine kinase
           [Acetivibrio cellulolyticus CD2]
          Length = 587

 Score =  314 bits (805), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 83/369 (22%), Positives = 168/369 (45%), Gaps = 31/369 (8%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            +  + +++ SI+E  + GI  ++    I+  N A   +F       +            
Sbjct: 244 NLNNKKVEVESIVENITYGIVAVDSNNKIILINPAAFDVFNMDKNAKVTSDI--LSAHIR 301

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDI 561
            + +N  L E +  +    LE        +EK+L ++    +    S     + +++ DI
Sbjct: 302 NNRLNLILKESVEQN--SPLESEITF---DEKVLLIKTSPIRPKNDSLSNSGWIISIQDI 356

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           ++ ++ +                +++F++ V+HE++TP+T+I GF E +K+   G +  P
Sbjct: 357 TKIRKLE--------------QLRTEFVSNVTHELKTPITSIRGFIETLKS---GAINKP 399

Query: 622 RYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
              E + + ID     + +++ND+L +S+IE+   +   E  SL   +     +++  A 
Sbjct: 400 DVSERFLDIIDIEAERLHELINDILSLSEIENKLSDTDLESFSLKSIIDGVFEVMENIAI 459

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
           EK +L+  +    I  I A+   +KQ+ LN++ NAI +    G + +        +V++ 
Sbjct: 460 EKNVLLNNTVDEKIL-IKANRNRMKQLVLNLVDNAIKYNIPTGSVTVDAQRV-GGKVVIS 517

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V+DTG+G+    + +  + F ++   +     GTGLGL + K +V+   G   + S   K
Sbjct: 518 VKDTGIGIPPDHIPRIFERFYRVDKGRSRDMGGTGLGLSIVKHIVNLYNGDIKVSSEVGK 577

Query: 801 GTLIEIIFP 809
           GT   I  P
Sbjct: 578 GTEFIIQLP 586


>gi|114705118|ref|ZP_01438026.1| putative sensor histidine kinase transmembrane protein [Fulvimarina
           pelagi HTCC2506]
 gi|114539903|gb|EAU43023.1| putative sensor histidine kinase transmembrane protein [Fulvimarina
           pelagi HTCC2506]
          Length = 774

 Score =  314 bits (805), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 125/657 (19%), Positives = 242/657 (36%), Gaps = 63/657 (9%)

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
           L      L     G  +      +          L +      L          L  E  
Sbjct: 124 LQPGRFILVSGTDGIITAASPGSEYLIGTDLVTELALSPTAIQLGRGETTVPGTLNEEAI 183

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP---SLSAYFD 316
              +   +          I     +  +    +         ++           ++  +
Sbjct: 184 ETSSMMLADGLGLGTIVQIERPALSAWREALAVNVTLFSLTSFVVLAIVLAYFRQASRAN 243

Query: 317 EGENLTPETVDKCPIPFFVYSHGNL--------FYANPSFLLLTKYKSVDDIEIAGGLST 368
           E +    ET +       +   G             + S   L  +           L  
Sbjct: 244 EAQTAYLETHELVDTALSLGRSGLWDWNVTRGEVQLSRSLYELLGFSPKTASIGFAELEH 303

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
            L    +   + +  V++   DR           ++    + + +            E  
Sbjct: 304 RLHPADIGVKHRLCRVVVGNVDRFDKTF-----RLRHRDGHFVWLRAHAEATRTSSGE-R 357

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
              GI  +  + +    + +    QL S +E   +   + + E  I+  N     +FG  
Sbjct: 358 HLVGIAMDVSEQQAFAERTKEAHHQLHSAIENIPETFVLCDNEDDIILANSRYRTVFGLS 417

Query: 489 VEDIL-RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
            ED          + ++   + +  ++   S     + E        + + L L     +
Sbjct: 418 EEDTKPGTNLAQVMRKSRKPIESAQVSGSSSKRDDSSSEI----KMPDGRWLLLS----E 469

Query: 548 LPFSSCYSLTMHDISEWKQEKNKLSHAKKI------------------------------ 577
              +  +     DI++ K  + +L  +++                               
Sbjct: 470 RRTAEGFIAIGADITQLKMHQTRLHESERRLTDIIHALSETRSDAERKAAQLEELNHSFR 529

Query: 578 -----AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
                AE  S  K+ FLA +SHE+RTPL AI+GFS++++ Q  GP+G+ +Y  YA+ I  
Sbjct: 530 IEKNKAEAASRAKTTFLANMSHELRTPLNAILGFSDIMRQQMLGPIGSEKYTGYAHDIHE 589

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
           SG  +L +++D+LD+ KIE+G+  +      L EAV+E+  +++     ++I +      
Sbjct: 590 SGEFLLQLIDDILDMQKIETGRTTMLRRIFDLTEAVAESARMIEASVARRQIDLVVEQPE 649

Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752
            +  I AD R+V QI +N++SNA+ F+ +GG++ +S     +  V+L + D G G++   
Sbjct: 650 KL-NIYADRRAVTQILMNLMSNAVKFSDAGGEVRVSVK-ERSGAVLLSITDRGEGISQCN 707

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           L K  +PF Q  +      +GTGLGL +A+++ + + G+F I ST  +GT++ I  P
Sbjct: 708 LAKIGRPFEQTESEWTRTKKGTGLGLAIARSLTELHGGRFRIASTLGEGTIVAIRLP 764


>gi|109899905|ref|YP_663160.1| PAS/PAC sensor hybrid histidine kinase [Pseudoalteromonas atlantica
           T6c]
 gi|109702186|gb|ABG42106.1| PAS/PAC sensor hybrid histidine kinase [Pseudoalteromonas atlantica
           T6c]
          Length = 1172

 Score =  314 bits (805), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 110/752 (14%), Positives = 252/752 (33%), Gaps = 51/752 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGM--RLCDVSDILHIDPNNHIGDLLKRQNTW 143
            W  +         E++    G     + G   +  D+      D    +  L       
Sbjct: 150 IWEFNLDEQKLIWDEQMYTLYGCNPKVVSGELSQWSDLLHPD--DKEEALSALNHSLTKI 207

Query: 144 YGKTTLWPIE---GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRAL---G 197
                 + I    G   ++     A P+ S        +  G+ +        +     G
Sbjct: 208 AKLDIAFRIITPCGETRHMR--AFARPLRSPTGNV--AKIIGVNYDIGAQKQHQQWLENG 263

Query: 198 KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR---MKNKVSSLTEYYAHKDDV- 253
            + ++ F  +         +  E   I         +    ++  +     +        
Sbjct: 264 LQSNELFIKVLRETDNAVIITDENVKIKWVNPGFTRITGYYLEEILGKNPGHVLQGSQSN 323

Query: 254 -LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS-- 310
             K         +      +   +  +      K     +     +   +++ ++  +  
Sbjct: 324 PDKIAIMRRAVEKRERFNVEILNYRRDGEHIWLKINSHPMY-LGGKFNGFIAIQSDITEQ 382

Query: 311 --LSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDD-----IEI 362
                   +   +    +D   +        G +   N +      Y   +      I+ 
Sbjct: 383 KNAELALLKANKIQKAILDSAHLLMISCDAQGKILTCNQTVEKALGYTKAELKQSGNIQQ 442

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
               + L+D  ++S       +  +    +         T        + M        +
Sbjct: 443 FMMQNELIDFMQVSTQRQGSSLDAFFYLASQGQVDENQWTFVTKNNVQVPMEVTVTGVMS 502

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
              +      +  +    +  +++   +   L +  E  + G   +N E   ++ +  V 
Sbjct: 503 PDNQVERYLLVGRDISQIKQFEKERRHQQDLLETTGEMANLGGWALNLETDEVTWSDQVY 562

Query: 483 KLFGYPVEDILRKPFTVFLEQNT-PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
           ++   PV   +     +         ++   +   ++   +  L+   +  T + K + +
Sbjct: 563 RIHELPVGSDVDLSSAMKFYPEDVRPLVQKAIDSSIAAGKKWDLQVPFI--TAKGKHIWV 620

Query: 542 RIIIKKLPFSSCYSLTMH----DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
           R  +    + +   + +     DI+E K+ + +       A++ S  KS+FLA +SHEIR
Sbjct: 621 R-AVGYAEYQNGRPVVLRGAFQDITEMKKAEEQ-------AKEASRAKSEFLANMSHEIR 672

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TP+  I+G ++++           +   +A  +  S   +L ++ND+LD SKIE+GK+++
Sbjct: 673 TPINGIVGMNDLLLATEL----TDKQRHFAELVHSSSESLLLLINDILDFSKIEAGKLSI 728

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAI 716
                 L   +   I      A +K + +      ++P  I +D   ++QI  N+L NAI
Sbjct: 729 ESIYFDLHLLLGNIIDTFASRAQQKGLELVFDLQMDVPQWITSDPGRIRQILNNLLGNAI 788

Query: 717 HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
            FT  G ++I+      + ++   V+DTG+G+     +     F Q+ +S      GTGL
Sbjct: 789 KFTHHG-EVIMRVALEGDNQLKFFVQDTGIGIHEDNQKALFSKFMQVDSSTTRHFGGTGL 847

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           GL ++K + +   G   + S   +G+      
Sbjct: 848 GLAISKQLSELLGGTVGVSSQWQQGSTFWFTI 879



 Score = 39.2 bits (90), Expect = 3.1,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 41/106 (38%), Gaps = 5/106 (4%)

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
           LEA S     I ++ I+L  N A  +LFG   + ++  P    LE    S  +     + 
Sbjct: 14  LEAVSSATLHITKDQIVLFANEAACELFGLDSKSLINTPVERLLENFYSSNDHALNNNLF 73

Query: 518 --SLDLRQTLEKITLGSTKEEKLLSLRIIIKK---LPFSSCYSLTM 558
                  + LE I   +    + L  +  +K    L   S Y +T+
Sbjct: 74  YSEAKGNKLLEGIFKCTLASGEYLIAQASVKSVDWLDDDSSYVVTI 119


>gi|323498035|ref|ZP_08103043.1| aerobic respiration control sensor protein ArcB [Vibrio sinaloensis
           DSM 21326]
 gi|323316911|gb|EGA69914.1| aerobic respiration control sensor protein ArcB [Vibrio sinaloensis
           DSM 21326]
          Length = 786

 Score =  314 bits (805), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 86/400 (21%), Positives = 167/400 (41%), Gaps = 19/400 (4%)

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
               +         +E E       + ++      L S ++A+ D I   N +G+    N
Sbjct: 122 RIKAEEAREEAMKDLENEVYQRERTQLELAERTALLRSFIDASPDLIYYRNADGVFSGCN 181

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
           RA+ +L G     ++         +     +      + S +   T E+        +  
Sbjct: 182 RAMEELTGKKESQLVGLTPWDVYSKEVAQQIVDTDQRVFSDNQALTYEQWLEYPDGHKNY 241

Query: 539 LSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
             LR +                 DI+E K+ +  L       EK S  K+ F++ +SHE+
Sbjct: 242 FELRKVPFYSKDGRHLGLVGFGRDITERKRHEESL-------EKASRDKTTFISTISHEL 294

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTPL  I+G S ++ + +           +   I+ S   + +I ND++D+ K +  K+ 
Sbjct: 295 RTPLNGIVGLSRMLLDTQM----TQEQRNHMQTINVSAITLGNIFNDIIDMDKFDRRKLE 350

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNA 715
           L+   ++ +  V+E  S+  L A++K +       + +P  I  D   ++Q+  N++SNA
Sbjct: 351 LYPSALNFENFVAEMESISALMASQKGLRFDLERLSALPSAIEVDATRLRQVLWNLISNA 410

Query: 716 IHFTPSGGQI-IISTTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGE 772
           + FT  GG +  +S         + + V D+G+G+   EL+K    + Q+ + +      
Sbjct: 411 MKFTKEGGVVMTVSAEIEQGYANITMEVEDSGIGIPEAELDKIFAMYYQVKSGKDNLHAV 470

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF--PL 810
           GTG+GL ++K +++   G   + S    G+   +    PL
Sbjct: 471 GTGIGLAVSKQLINMMDGDITVSSEEGFGSTFTVTIHVPL 510



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/203 (12%), Positives = 57/203 (28%), Gaps = 8/203 (3%)

Query: 19  KGNTQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVS---NTNYLDSENTFV 75
           +   Q+L+ K   N  +  +  +E    +   +    D   E          L      +
Sbjct: 98  RSRDQELNHKLQQNITKLNQEIEERIKAEEAREEAMKDLENEVYQRERTQLELAERTALL 157

Query: 76  FDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIG 134
              I  +    +  +A G     +  + +  G    +++G+   DV          +   
Sbjct: 158 RSFIDASPDLIYYRNADGVFSGCNRAMEELTGKKESQLVGLTPWDVYSKEVAQQIVDTDQ 217

Query: 135 DLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR 194
            +         +  L   +G   Y   +L  +P YS++    G  GFG            
Sbjct: 218 RVFSDNQALTYEQWLEYPDGHKNYF--ELRKVPFYSKDGRHLGLVGFG--RDITERKRHE 273

Query: 195 ALGKRLDKKFSHLHEIKKGHSSV 217
              ++  +  +            
Sbjct: 274 ESLEKASRDKTTFISTISHELRT 296


>gi|163850235|ref|YP_001638278.1| PAS sensor protein [Methylobacterium extorquens PA1]
 gi|163661840|gb|ABY29207.1| PAS sensor protein [Methylobacterium extorquens PA1]
          Length = 1065

 Score =  314 bits (805), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 96/771 (12%), Positives = 219/771 (28%), Gaps = 77/771 (9%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI-GDLLKRQNTWYGKT 147
           +D    + +++ E  +       +++G    ++       P   +    ++ +     + 
Sbjct: 188 LDRDFRILQMNAEGFRLEERPPGEVLGSSHWEIYPGSEQMPIGQMYLRAMRERMPLTLEH 247

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIV-HVNRVDNDPRALGKRLDKKFSH 206
                +G   ++ +           R +    G  +         +     +  + +   
Sbjct: 248 RHVWPDGHAAWLEV-----------RAYPHPEGLALFYRDVTERREREKALREAEARLRA 296

Query: 207 LHEIKKG------HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
           L +   G          +               +   +  ++L +  A  D +L   +  
Sbjct: 297 LADNLPGGMVYQIAMDRDGSNRRFLYVSRGFERMTGMSAEAALLDPAAAYDLILPEYREG 356

Query: 261 LLTSEE------SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES---FEYLSHRNHPSL 311
           L  +E       +    +  F   +      +      +                +   +
Sbjct: 357 LAAAEHVAIRDLAPFDFETPFRRSDGEVRWSRIISAPRRQPDGSLVWDGIQFDDTDRKQV 416

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
                E E       +      +     G+  Y N  +   T   +        G     
Sbjct: 417 EERLRESEAKFQAIANSIDQMVWSTGPDGHHDYFNQRWYDFTGVPA----GSTDGKDWED 472

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
                             +         RL   +                 ++       
Sbjct: 473 IVHPGDRARTWTSWSACLATGEPYRIEYRL---RHRTGQYRWTLGRALPMRDEAGRITRW 529

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSIL-------EAT----SDGIAIINREGIILSTNR 479
            G   +  D    +  +      L  ++       +      +D + +   +  I + N 
Sbjct: 530 FGTCTDIQDIVEAREVLARSREDLERLVAERTADRDRMWRLSTDVMLVARYDATIEAVNP 589

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
           A + L G+   +++   F   +  +  +     + ++       TL        K+    
Sbjct: 590 AWTTLLGWDERELIGSAFMDLVHPDDVAATLAEVGKL--SGGVTTLRFENRYRQKDGSYR 647

Query: 540 SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES--SHKSDFLARVSHEIR 597
            L                  DI+  K+    L+  ++   +             ++H+  
Sbjct: 648 WLSWTAVPAED--LIHAVGRDITAEKEAAQALAETEEALRQAQKMEAVGQLTGGIAHDFN 705

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
             LT I+G  ++++  R          +YA     S N    + + LL  ++    +  L
Sbjct: 706 NLLTGIVGSLDMMQ-TRVAQGRTDTIEKYAKAAMSSANRAAALTHRLLAFAR----RQPL 760

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
             +PV+ +  V+    L++    E  + +    A  +   L D   ++   LN+  NA  
Sbjct: 761 DPKPVNANTLVTSLEDLLRRTIGEA-VSLEIVTAGGLWPTLCDPHQLESAVLNLAINARD 819

Query: 718 FTPSGGQIIIST--------------THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
             P GG++ I T                   + + + V DTG GM    + +A  PF   
Sbjct: 820 AMPDGGKLTIETCNTHLDRAYAKLHPGVEPGQYICICVTDTGTGMPPDVVARAFDPFFTT 879

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
                  G+GTGLGL +       + G   I+S   +GT ++I  P +  +
Sbjct: 880 KP----IGQGTGLGLSMIYGFARQSEGHAKIYSEVGQGTSVKIYLPRHRGA 926



 Score =  192 bits (487), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 55/517 (10%), Positives = 135/517 (26%), Gaps = 23/517 (4%)

Query: 82  TVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN 141
            +   W           +E   + +G+     +G R  D+   +  D    I   +  + 
Sbjct: 56  PMFVAW--GPELGFLY-NEPYAEILGDKHPAALGSRFHDIWAEIWDDIAPLIDRAMAGEA 112

Query: 142 TWY-GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
           TW      +    G +       +  P+     E  G   F                +  
Sbjct: 113 TWAENLPLVMNRHGYDERTWFTFSYSPVRDDEGEVGGM--FCACTETTAKVKAEEALRAS 170

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL--RMKNKVSSLTEYYAHKDDVLKTEK 258
           + + S + E       +    + I    +    L  R   +V   + +  +         
Sbjct: 171 EARASGVLEGMGEGFMLLDRDFRILQMNAEGFRLEERPPGEVLGSSHWEIYPGSEQMPIG 230

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
              L +    +P   +   +  + +          +    +  Y              E 
Sbjct: 231 QMYLRAMRERMPLTLEHRHVWPDGHAAWLEVRAYPHPEGLALFYRDVTERREREKALREA 290

Query: 319 ENLTPETVDKCPIP----FFVYSHG---NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
           E       D  P        +   G      Y +  F  +T   +   +        L+ 
Sbjct: 291 EARLRALADNLPGGMVYQIAMDRDGSNRRFLYVSRGFERMTGMSAEAALLDPAAAYDLIL 350

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
                   A +   +   D             + +         I   +       +  +
Sbjct: 351 PEYREGLAAAE--HVAIRDLAPFDFE---TPFRRSDGEVRWSRIISAPRRQPDGSLV-WD 404

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
           GI+ +D D +  + ++     +  +I  +    +     +G     N+      G P   
Sbjct: 405 GIQFDDTDRKQVEERLRESEAKFQAIANSIDQMVWSTGPDGHHDYFNQRWYDFTGVPAGS 464

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
              K +   +     +      +  L+      +E      T + +    R +  +    
Sbjct: 465 TDGKDWEDIVHPGDRARTWTSWSACLATGEPYRIEYRLRHRTGQYRWTLGRALPMRDEAG 524

Query: 552 S--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
               +  T  DI +  + +  L+ +++  E+  + ++
Sbjct: 525 RITRWFGTCTDIQDIVEAREVLARSREDLERLVAERT 561



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 53/423 (12%), Positives = 109/423 (25%), Gaps = 41/423 (9%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL-LKRQNTWY 144
            W+    G+    ++      G  A    G    D+                L     + 
Sbjct: 438 VWSTGPDGHHDYFNQRWYDFTGVPAGSTDGKDWEDIVHPGDRARTWTSWSACLATGEPYR 497

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            +  L    G   Y      ALP+       +  R FG     +   + R +  R  +  
Sbjct: 498 IEYRLRHRTG--QYRWTLGRALPMRDEAGRIT--RWFGTCTDIQDIVEAREVLARSREDL 553

Query: 205 SHLH-----------EIKKGHSSVEKEKYDIFSQQSPPPHL---RMKNKVSSLTEYYAHK 250
             L             +      V +    I +       L     +  + S      H 
Sbjct: 554 ERLVAERTADRDRMWRLSTDVMLVARYDATIEAVNPAWTTLLGWDERELIGSAFMDLVHP 613

Query: 251 DDVLKT-EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
           DDV  T  +   L+   ++L  +  +   + +           ++               
Sbjct: 614 DDVAATLAEVGKLSGGVTTLRFENRYRQKDGSYRWLSWTAVPAEDLIHAVG------RDI 667

Query: 310 SLSAYFDEGENLTPETVDKCP--IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
           +      +    T E + +          + G     N     +    S+D ++      
Sbjct: 668 TAEKEAAQALAETEEALRQAQKMEAVGQLTGGIAHDFNNLLTGIVG--SLDMMQTRVAQG 725

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
                 K +                 +A + R          +  +T +         E 
Sbjct: 726 RTDTIEKYAKAAMSSANRAAALTHRLLAFARRQPLDPKPVNANTLVTSLEDLLRRTIGEA 785

Query: 428 MPQNGIEPEDVDTRI-NKRKMEIEVMQLC-SILEATSDGIAIINREGIILSTN----RAV 481
           +    +    +   + +  ++E  V+ L  +  +A  DG      +  I + N    RA 
Sbjct: 786 VSLEIVTAGGLWPTLCDPHQLESAVLNLAINARDAMPDG-----GKLTIETCNTHLDRAY 840

Query: 482 SKL 484
           +KL
Sbjct: 841 AKL 843


>gi|330447436|ref|ZP_08311085.1| aerobic respiration control sensor protein arcB [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
 gi|328491627|dbj|GAA05582.1| aerobic respiration control sensor protein arcB [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
          Length = 789

 Score =  314 bits (805), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 97/452 (21%), Positives = 187/452 (41%), Gaps = 20/452 (4%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L        +    L+    +  + L +     +KA +  E      +E E
Sbjct: 81  EESRQRLSKLVTKLEEMRSRDLELNQQLQDNISQLNLEIEERKKAEEAREEA-MQDLENE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
                  +  +  +   L S L+A+ D I   N +      NRA+S+L G   ++++   
Sbjct: 140 VYQRENAQLAVAEQSALLKSFLDASPDLIYYRNEKNQFSGCNRAMSELLGKTEKELVGLT 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CY 554
                 +     +     E+   +   T E+  +    +  L  LR +            
Sbjct: 200 PWDVYPEEVAKKIIKTDEELFHENNAMTDEQWLVYPNGKRALFELRKVPFYSRNGRRLGL 259

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+ ++ L       EK SS K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 260 MGFGRDITERKKYEDAL-------EKASSDKTSFISTISHELRTPLNGIVGLSRMLLDTE 312

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                      Y   +  S   + +I ND++D+ K +  ++ L  +P+   E V E  ++
Sbjct: 313 L----TDEQRGYLRTVHVSAITLGNIFNDIIDLDKSDRRRLELMPKPLDFHEFVDEMGNI 368

Query: 675 VQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQI-IISTT-H 731
            QL A +K +        ++P  I  D   ++Q+  N++ NA  FT  GG I  +S+  H
Sbjct: 369 SQLMAEQKGLRFDLECLTDLPKNIEVDSTRLRQVLWNLIGNATKFTKQGGVILSVSSEIH 428

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP-NSQQIRGEGTGLGLPLAKAMVDANMG 790
             + +++  V D+GVG+   E++     + Q+      I   GTG+GL +++ +V    G
Sbjct: 429 EHDADIVFEVEDSGVGIPKSEIDNIFAMYYQVKQGDDNIHAVGTGIGLAVSRQLVQLMGG 488

Query: 791 KFYIFSTPAKGTLIEI--IFPLYDTSHPHDCI 820
              + S   +G+   +    PL +     + +
Sbjct: 489 DITVDSEVGEGSTFRVKIRVPLVEDVIEEEIV 520



 Score = 43.5 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 33/124 (26%), Gaps = 5/124 (4%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPIE 153
               +  + + +G    +++G+   DV              +L    N    +   W + 
Sbjct: 177 FSGCNRAMSELLGKTEKELVGLTPWDVYPEEVAKKIIKTDEELFHENNAMTDE--QWLVY 234

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
                   +L  +P YSRN    G  GFG               ++     +        
Sbjct: 235 PNGKRALFELRKVPFYSRNGRRLGLMGFG--RDITERKKYEDALEKASSDKTSFISTISH 292

Query: 214 HSSV 217
               
Sbjct: 293 ELRT 296


>gi|312862820|ref|ZP_07723060.1| PAS domain S-box protein [Streptococcus vestibularis F0396]
 gi|311101680|gb|EFQ59883.1| PAS domain S-box protein [Streptococcus vestibularis F0396]
          Length = 446

 Score =  314 bits (805), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 90/420 (21%), Positives = 172/420 (40%), Gaps = 36/420 (8%)

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT-RINKRKMEIEVMQLCSIL 458
           +  +    ++ +A  +    +     E +       +  D  R+    +  E  +L S+L
Sbjct: 40  IRKLTKRVKSLMAGNYNEKLRIKGDSELLELADRLNDLSDVFRLTHENLAQEKNRLSSVL 99

Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
              SDG+   NR G I   N    +L     E   +      L+   P   +  L     
Sbjct: 100 SYMSDGVIATNRRGQITMINSTAQRLLNLDRESATQMSILDLLDGENPYTYSELL----- 154

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHA 574
               +T E         ++ ++LR+    +   S +       +HD +E ++E+ +    
Sbjct: 155 ---SKTPEIHLSRRDANDEFVTLRVNFALIRKESGFISGLVAVLHDATEQEKEERERRL- 210

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
                        F++ VSHE+RTPLT++  + E +     G L       +        
Sbjct: 211 -------------FVSNVSHELRTPLTSVKSYLEAL---DDGALHEEIAPNFIKVSLDET 254

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV-----QLYANEKRILIRTS 689
           N ++ +++DLL +S+I++    L  E  +    ++  ++       Q     K   I   
Sbjct: 255 NRMMRMISDLLALSRIDNKSTQLDVEMTNFTAFMTYILNRFDQIKSQETNPGKFYEIIRD 314

Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749
           ++ N   +  D   + Q+  NIL+NAI ++P GG+I +S   T + ++I+ + D G+G+ 
Sbjct: 315 YSVNSIWVEIDTDKMTQVVDNILNNAIKYSPDGGKITVSMKTTDS-QLIVSISDQGLGIP 373

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             +L      F ++  ++     GTGLGL +AK +V  + G  +  S   KG+   I+ P
Sbjct: 374 KKDLPLIFDRFYRVDKARSRAQGGTGLGLSIAKEIVKQHKGFIWAKSEYGKGSTFTIVLP 433


>gi|169827295|ref|YP_001697453.1| sensor protein [Lysinibacillus sphaericus C3-41]
 gi|168991783|gb|ACA39323.1| Sensor protein [Lysinibacillus sphaericus C3-41]
          Length = 561

 Score =  314 bits (805), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 80/363 (22%), Positives = 145/363 (39%), Gaps = 29/363 (7%)

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
            E  QL +IL + +D +   NR+  IL +N    +L      +   +       +  P  
Sbjct: 224 QENEQLSNILTSMTDAVITFNRDRTILLSNPPAERLMQKWFVNKGSQS-----AKPIPPE 278

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISEWKQE 567
           + H L  +L  + +   E        +    +  I               + D++E  + 
Sbjct: 279 LYHMLDHVLMFEDKLEEEIEM-----DGNYYTFTISPLYSGEIIRGAVAVIRDMTEQHRL 333

Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
           +                +SDF+A VSHE+RTP+  + G+SE + +  F         E  
Sbjct: 334 E--------------KLRSDFIANVSHELRTPIAMLQGYSEALMDDDFIQ-DQEERNEIT 378

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
             I      +  +V DLLD++++ESG M L+ + + ++             A EK + + 
Sbjct: 379 KIIYDESKRMGRLVTDLLDLARMESGHMTLYKDELPINSTFERITQKFAQVAKEKHVHLL 438

Query: 688 TSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
                N+   I  D   ++Q+  N++ NA+  T  G  + +           + V+DTG 
Sbjct: 439 FDSEFNDDAMINIDEDRIEQVLTNLVDNALRHTDEGS-VTVKVEKEPT-FAKISVQDTGH 496

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+   +L    + F +   ++     GTGLGL +A+ +V A+ G   + S   +GT    
Sbjct: 497 GIPQDDLPYVFERFYKADKARTRSKGGTGLGLAIARNIVKAHSGNIMVDSVLKEGTTFTF 556

Query: 807 IFP 809
             P
Sbjct: 557 YLP 559


>gi|88802612|ref|ZP_01118139.1| sensory transduction histidine kinase [Polaribacter irgensii 23-P]
 gi|88781470|gb|EAR12648.1| sensory transduction histidine kinase [Polaribacter irgensii 23-P]
          Length = 907

 Score =  314 bits (805), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 111/487 (22%), Positives = 211/487 (43%), Gaps = 21/487 (4%)

Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399
            +   + +   +      + +     L    D   +S    +       +         +
Sbjct: 159 KITSWSKTVHTIYGTDPREGVPSEKILLNCFDE--VSKQQFLNARSSLAAHGKLYDIELK 216

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459
           +  ++        +  +     N   E +   GI     + + N+ K++    +     +
Sbjct: 217 ITNLKNENR---WIQRVGEPLYNHKKEIIGSRGIIRCITNLKKNQEKLKQSNERYHLATK 273

Query: 460 ATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRK--PFTVFLEQNTPSVMNHYLTEI 516
           AT+D +   N   G I  +     K++G+  +  + K   +  ++  +  + +   L +I
Sbjct: 274 ATNDAVWDWNLVTGKIYRSAVGFDKVYGFDKKRPIDKKANWNAYIHPDDKNRITKLLEKI 333

Query: 517 LSLDLRQTLEKI--TLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLS 572
           ++   +         +G T + K ++ R  I +              +I++ ++ KN+L 
Sbjct: 334 IASSDQNNFSFEYGFIGPTGDYKYINDRGFIVRNEDGKAIRIIGAASNITKREEIKNELI 393

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
            AK+ AE+ +  K  FLA +SHEIRTPL  IIGF++++           +     N I  
Sbjct: 394 LAKEQAEELAGFKDQFLANMSHEIRTPLNGIIGFTKILLRDN----ATKKQRHQLNAIKT 449

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
           S +++L +VND+LD+SKIE+GKM L    + L   V+  +S  +L   EK   + T F  
Sbjct: 450 SSDILLVVVNDILDLSKIEAGKMILEKTNLKLPNLVNSVLSTFELRIGEKEQTLNTRFDK 509

Query: 693 NIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVG 747
           NIP  ++ D   + QI LN++ NA+ FT  GG I +       +E    V + V DTG+G
Sbjct: 510 NIPKWLIGDTVRINQILLNLIGNALKFTAVGGTINVHLNLLHQDENKVNVEISVSDTGIG 569

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           + + +++    PF Q  ++   +  G+GLGL + K ++D   G   + S  + G+   + 
Sbjct: 570 IPSDKIKNIFDPFIQSSDNTARKYGGSGLGLNIVKQLIDLMHGSISVKSQESIGSTFTLT 629

Query: 808 FPLYDTS 814
            PL  + 
Sbjct: 630 IPLIKSE 636


>gi|159900990|ref|YP_001547237.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159894029|gb|ABX07109.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 581

 Score =  314 bits (805), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 96/411 (23%), Positives = 186/411 (45%), Gaps = 16/411 (3%)

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
               A T               +        + +    ++++   +  ++ EATS+G+ +
Sbjct: 168 ATIAAATIQGIRLRTVKGLIKLRLQESTYKQELQEALIQIKMSEERFRALAEATSEGVVL 227

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
            + EG+++  N    ++FGY  ++IL      F+E  +   +   + +            
Sbjct: 228 QD-EGVVMDANERFGEMFGYHRDEILGHSLREFVEPQS---LQRAMQKYKDGAP-----Y 278

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSLT--MHDISEWKQEKNKLSHAKKIAEKESSHK 585
                 K+       ++   LP+S+       + DI+E +  +N L  AK  AE  +  K
Sbjct: 279 EVTALRKDGSTFIALVLGTNLPYSNRVVRVAAVRDITEQRHFENLLLTAKDDAEAANRAK 338

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
           S FL+ VSHE+RTPL AI+G+SE+I             ++    I  + + +L +++ +L
Sbjct: 339 STFLSTVSHELRTPLNAIVGYSEMIYEDLIDRSMPELAMD-MTRIRSASDRLLSLIDGVL 397

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
            I+ +++  + L +E + L  A+      +Q  A + +  ++   + N   I++D   ++
Sbjct: 398 TITDLDAEVVRLEYETIDLALAIGSISDQLQAKAQDNKNTVQLLGSQNWGSIISDDHKLR 457

Query: 706 QIALNILSNAIHFTPSGGQIIISTT---HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
            I  ++L NAI FT +G  I IS     H +   + + +RDTG+G+ + + E+  +PF Q
Sbjct: 458 MIIYHLLDNAIKFTHAG-LISISVQRLQHAAGGWLEIAIRDTGIGIAHEQFERIFEPFVQ 516

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
             +S   + EGTGLGL ++  +  A  G   + S    G+   +  P + T
Sbjct: 517 ADSSATRQYEGTGLGLAVSMRLARALGGTIELDSRLGIGSTFTLHMPEHPT 567



 Score = 51.2 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/250 (8%), Positives = 54/250 (21%), Gaps = 23/250 (9%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151
            G + + +E   +  G +  +++G  L +  +   +          K    +  + T   
Sbjct: 230 EGVVMDANERFGEMFGYHRDEILGHSLREFVEPQSLQ---RAMQKYKDGAPY--EVTALR 284

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
            +G+     +    LP  +R            V           L           +  K
Sbjct: 285 KDGSTFIALVLGTNLPYSNR------VVRVAAVRDITEQRHFENLLLTAKDDAEAANRAK 338

Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271
               S    +              +   +   +      D          L S       
Sbjct: 339 STFLSTVSHELRTPLNAIVGYSEMIYEDLIDRSMPELAMDMTRIRSASDRLLSL------ 392

Query: 272 QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI 331
                 I+            ++   +     L+  +         +    T + +     
Sbjct: 393 ------IDGVLTITDLDAEVVRLEYETIDLALAIGSISDQLQAKAQDNKNTVQLLGSQNW 446

Query: 332 PFFVYSHGNL 341
              +     L
Sbjct: 447 GSIISDDHKL 456


>gi|189426007|ref|YP_001953184.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189422266|gb|ACD96664.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 810

 Score =  314 bits (805), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 96/421 (22%), Positives = 183/421 (43%), Gaps = 25/421 (5%)

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
             N + + ++    A      +  N      +  +   R++         +++ +   I 
Sbjct: 249 GSNYVWLWWVLGGVALIALLLLFWNRGLRRIIARKT--RELRESERNYRELVQGSDSIIL 306

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
              R+G+I+  N   ++ FGY   +++ +     +  +        L ++L+     T +
Sbjct: 307 RWKRDGLIIFVNDYGARFFGYESSELIGESLFQTIVPHNQVDGRD-LHQLLADIFIHTDQ 365

Query: 527 KITLGS---TKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEW-------KQEKNKLS 572
                +    ++  L+ +    + +       L       DI+         +Q +  L 
Sbjct: 366 YRVNLNQNMRRDGSLVWISWNNRPVCDDQGQVLEMLSVGIDITARIDAENALRQNQQDLV 425

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
            A++ AE  +  KS FLA +SHEIRTPL AIIG + ++  +    L      E A     
Sbjct: 426 QARQAAEGANEAKSLFLANMSHEIRTPLNAIIGINSLLVER----LDAGELKELAKDSMA 481

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
           + N +LDI++D+LDISKIE+GK+ +   P      +++   +      EK +    S   
Sbjct: 482 AANNLLDIISDVLDISKIEAGKLEIVTVPFDPRMLINQLERMFGAIVREKGLRFDVSLGA 541

Query: 693 NIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILR--VRDTGVGM 748
           ++P  +L+D   ++QI +N+LSNA+ FT  G  ++ ++ +   +  V L   V D+G G+
Sbjct: 542 SLPGLLLSDPARIQQIGVNLLSNALKFTEQGTIRLRLTGSTLDDSTVQLDLIVSDSGKGI 601

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
               +E+   PF Q   S   +  GTGLGL +++ + +   G   + S   +G+      
Sbjct: 602 LAENIERVFSPFVQEDLSTTRKFGGTGLGLAISRHLAEMLGGSIKVESRIGEGSTFTCSI 661

Query: 809 P 809
           P
Sbjct: 662 P 662



 Score = 51.2 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/133 (12%), Positives = 35/133 (26%), Gaps = 11/133 (8%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL-----KRQN 141
           W     G +  +++   +  G  + ++IG  L       +      +  LL         
Sbjct: 308 WK--RDGLIIFVNDYGARFFGYESSELIGESLFQTIVPHNQVDGRDLHQLLADIFIHTDQ 365

Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
                      +G+   V I     P+     +       GI        D     ++  
Sbjct: 366 YRVNLNQNMRRDGSL--VWISWNNRPVCDDQGQVLEMLSVGI--DITARIDAENALRQNQ 421

Query: 202 KKFSHLHEIKKGH 214
           +      +  +G 
Sbjct: 422 QDLVQARQAAEGA 434



 Score = 48.5 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/166 (9%), Positives = 41/166 (24%), Gaps = 11/166 (6%)

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIA 363
            R     +    E E    E V         +   G + + N        Y+S + I   
Sbjct: 277 RRIIARKTRELRESERNYRELVQGSDSIILRWKRDGLIIFVNDYGARFFGYESSELIG-- 334

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSD--RTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
               +L       +    + +    +D           L+       + + +++      
Sbjct: 335 ---ESLFQTIVPHNQVDGRDLHQLLADIFIHTDQYRVNLNQNMRRDGSLVWISWNNRPVC 391

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL---CSILEATSDG 464
           +   + +    +  +       +  +      L       E  ++ 
Sbjct: 392 DDQGQVLEMLSVGIDITARIDAENALRQNQQDLVQARQAAEGANEA 437


>gi|148264419|ref|YP_001231125.1| multi-sensor hybrid histidine kinase [Geobacter uraniireducens Rf4]
 gi|146397919|gb|ABQ26552.1| PAS/PAC sensor hybrid histidine kinase [Geobacter uraniireducens
           Rf4]
          Length = 769

 Score =  314 bits (805), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 99/557 (17%), Positives = 190/557 (34%), Gaps = 48/557 (8%)

Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330
             E       +   K      +    +E  E                 E      V++  
Sbjct: 92  AVESMRAGARDYLIKDNLTRLIPAIKRELKEAFVRNERRKAEKALHATEARFQSLVEQSL 151

Query: 331 IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390
           +  ++   G   Y NP F  +  Y+  + IE    L   L A    +      + L   +
Sbjct: 152 VGIYLLQDGIFSYVNPKFARIFGYQQNELIESKTLLD--LVAESDRNKVIESYLNLLGEN 209

Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450
              +  + +        + +  +         +        G   +  + +  + ++   
Sbjct: 210 AQSLHFNFQGKR-----KYAKIIDLEAHGAKTELNGKPAVIGTLLDITERKRAEEELR-- 262

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
             +L   +E +   + I + EG I   N   + + GY  +++L K   +       +   
Sbjct: 263 --KLWRAVEQSPVSVVITDTEGNIEYVNPKFTAVSGYNEQELLGKNPRILQAGTMKADEY 320

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQ 566
             + E ++               K  +L      I  +  +      Y     DI+E K+
Sbjct: 321 KQMWETITAGKEW--HGEYHNKKKNGELFWESASISAIKNTEGQITHYVGVKEDITERKK 378

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
              +L  A+K+              ++H+    LT I G+S ++       + +P++ E 
Sbjct: 379 SIEQLRQAQKM-----EAIGQLAGGIAHDFNNLLTIINGYSTLLLRSLG--IDSPQHKE- 430

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
           A  I R+G    D+   LL  S+    K  L  + ++++  V     ++     E  I +
Sbjct: 431 AEQILRAGERAADLTRQLLSFSR----KQILAPKVLNINTQVKNIEKMLCRLIGEH-ITL 485

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS------------- 733
            T+   ++  I  D   V+QI +N+  NA   +  GG+I+I T +               
Sbjct: 486 VTNMDPDVGLIKIDPGQVEQIIMNLAVNARDASEDGGRIVIETANAELDDEFAANHPGSV 545

Query: 734 -NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
               ++L V D G+GM+     +  +PF          G GTGLGL     +V  + G  
Sbjct: 546 PGSYIMLSVCDNGMGMSEDVKRRLFEPFFTTKEL----GRGTGLGLATVYGIVKQSGGYI 601

Query: 793 YIFSTPAKGTLIEIIFP 809
            I S   +G   +I  P
Sbjct: 602 DITSELEQGATFKIFLP 618



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/131 (9%), Positives = 36/131 (27%), Gaps = 16/131 (12%)

Query: 83  VRFTWN-----------IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD-ILHIDPN 130
           +R  W             D  G ++ ++ +     G    +++G     +    +  D  
Sbjct: 261 LRKLWRAVEQSPVSVVITDTEGNIEYVNPKFTAVSGYNEQELLGKNPRILQAGTMKADEY 320

Query: 131 NHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVD 190
             + + +     W+G+       G         +   I +   + + +   G+       
Sbjct: 321 KQMWETITAGKEWHGEYHNKKKNGELF--WESASISAIKNTEGQITHY--VGVKEDITER 376

Query: 191 NDPRALGKRLD 201
                  ++  
Sbjct: 377 KKSIEQLRQAQ 387



 Score = 46.6 bits (109), Expect = 0.017,   Method: Composition-based stats.
 Identities = 24/302 (7%), Positives = 72/302 (23%), Gaps = 17/302 (5%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIG-MRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150
            G    ++ +  +  G    ++I    L D+      +        L  +N         
Sbjct: 159 DGIFSYVNPKFARIFGYQQNELIESKTLLDLVAESDRNKVIESYLNLLGENAQSLHFNFQ 218

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGF-GIVHVNRVDNDPRALGKRLDKKFSHLHE 209
                   + ++           E +G     G +             ++L +       
Sbjct: 219 GKRKYAKIIDLEAHGAKT-----ELNGKPAVIGTLLDITERKRAEEELRKLWRAVEQSPV 273

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
                 +  +   +  + +        + ++            +   E   +  +  +  
Sbjct: 274 SV--VITDTEGNIEYVNPKFTAVSGYNEQELLGKNPRILQAGTMKADEYKQMWETITAGK 331

Query: 270 PEQEDFHT--INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
               ++H    N   + +      ++N   +   Y+  +   +      E      +   
Sbjct: 332 EWHGEYHNKKKNGELFWESASISAIKNTEGQITHYVGVKEDITERKKSIEQLRQAQKM-- 389

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
                    + G     N    ++  Y ++  +   G  S      +       +   L 
Sbjct: 390 ---EAIGQLAGGIAHDFNNLLTIINGYSTL-LLRSLGIDSPQHKEAEQILRAGERAADLT 445

Query: 388 RS 389
           R 
Sbjct: 446 RQ 447


>gi|186683928|ref|YP_001867124.1| multi-sensor signal transduction histidine kinase [Nostoc
           punctiforme PCC 73102]
 gi|186466380|gb|ACC82181.1| multi-sensor signal transduction histidine kinase [Nostoc
           punctiforme PCC 73102]
          Length = 750

 Score =  314 bits (805), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 107/534 (20%), Positives = 221/534 (41%), Gaps = 32/534 (5%)

Query: 290 GTLQNNSKESFEYLSHRNH--PSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANP 346
             L++  ++  + L+  N    +  A     +      +   P   F +   GN+   NP
Sbjct: 235 AELEHRVQQRTQELAKANVSLRAEIAERQRTQAALQALITASPRAIFTLDLEGNVKIWNP 294

Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
           +   +  +   + I+    +       +L + N ++  +L    +        L   + +
Sbjct: 295 AAERMFGWTEAEVIDHPNPI---FLDDQLEEYNTLQESIL----QGTTYTRVELRRFKKD 347

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
              ++ + F      +          +  +    +      E +V  L S++  T+D + 
Sbjct: 348 G-TAIDIVFSAAPLHDSDDSINGMVAVIADITHQKQQ----EEQVRLLQSVVVNTNDAVV 402

Query: 467 IINRE-----G-IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520
           I   +     G  I+  N A +++ GY +E++L K   +     T       +   LS  
Sbjct: 403 ITEAQPIGEPGPNIIYVNEAFTRITGYSLEEVLGKTPRILQGAKTSRAELDKVWTALS-- 460

Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKK 576
             +T+    +   K+         I  +   + +         DI+  K+  +++  A +
Sbjct: 461 CWETVTVQVINYRKDGSEFWNEFSIVPVADQTGWYTHWISVQRDITGRKRL-DEIRMALE 519

Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
              + S  K+ F +  SHE RTPL+  +  +++++N +     + + +     I  S   
Sbjct: 520 RERELSVLKTRFFSMASHEFRTPLSTALVAAQLLENCQDEWDNSSKRLRNLQRIQLSVKN 579

Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696
           ++ I++D+L I++ E+GK+  + + + L+E  S+ +  ++L  +E+   +          
Sbjct: 580 MVQILDDILTINRAETGKLEFNPKLLDLEEFCSDFVEEMRLSTDERH-TLSFVCQGKAVP 638

Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKA 756
              D R ++ I  N+L NAI ++P GG + +S    S+  VIL+V+D G+G+   + ++ 
Sbjct: 639 ASVDERLLRSILSNLLLNAIKYSPEGGNVHLSLEFKSD-TVILQVKDRGIGIPLADQKQL 697

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            +PF +  N +     GTGLGL + K  VD + G   I S    GT   I  PL
Sbjct: 698 FEPFHRGKNVKS--IPGTGLGLVVVKKCVDLHQGHINITSEIGIGTTCAIALPL 749



 Score = 65.8 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/248 (9%), Positives = 75/248 (30%), Gaps = 12/248 (4%)

Query: 84  RFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTW 143
           R  + +D  G +K  +    +  G    ++I      +     ++  N + + + +  T+
Sbjct: 278 RAIFTLDLEGNVKIWNPAAERMFGWTEAEVIDHP-NPIFLDDQLEEYNTLQESILQGTTY 336

Query: 144 YGKTTLW-PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
                     +GT   + I  +A P++  +   +G     ++             + L  
Sbjct: 337 TRVELRRFKKDGTA--IDIVFSAAPLHDSDDSINGM--VAVIADITHQKQQEEQVRLLQS 392

Query: 203 KFSHLHEIK--KGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEK 258
              + ++         + +   +I         +      +V   T          + E 
Sbjct: 393 VVVNTNDAVVITEAQPIGEPGPNIIYVNEAFTRITGYSLEEVLGKTPRILQGAKTSRAEL 452

Query: 259 YPLLTSEE--SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
             + T+     ++  Q   +  + +++  +     + + +     ++S +   +     D
Sbjct: 453 DKVWTALSCWETVTVQVINYRKDGSEFWNEFSIVPVADQTGWYTHWISVQRDITGRKRLD 512

Query: 317 EGENLTPE 324
           E       
Sbjct: 513 EIRMALER 520


>gi|320547234|ref|ZP_08041527.1| sensor histidine kinase VicK [Streptococcus equinus ATCC 9812]
 gi|320448122|gb|EFW88872.1| sensor histidine kinase VicK [Streptococcus equinus ATCC 9812]
          Length = 450

 Score =  314 bits (805), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 82/378 (21%), Positives = 161/378 (42%), Gaps = 35/378 (9%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           R+ +  +  E  +L SIL   +DG+   +R G I   N+   +      E+ L       
Sbjct: 83  RLAQENLAQEKNRLASILSYMTDGVLATDRSGNITMINQTAQQQLNLEREEALGMNIVDI 142

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS----L 556
           L  ++    +  +         +T + +     +  + ++LRI        S +      
Sbjct: 143 LGDDSDYTYHDLV--------SKTPDIVLNRRDETGEFITLRIRFALNRRDSGFISGLIA 194

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            +HD  E ++E                 +  F++ +SHE+RTPLT++  + E +     G
Sbjct: 195 VLHDTMEQEKE--------------DRERRLFVSNISHELRTPLTSVKSYLEAL---DEG 237

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV- 675
            L       +        N ++ +++DLL++S+I++  + L  E  +    ++  ++   
Sbjct: 238 ALKEDIAPSFIKISLDETNRMIRMISDLLNLSRIDNQTVQLEVEMTNFTAFMTSILNRFD 297

Query: 676 ----QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
               Q     K+  I   +      +  D   + Q+  NIL+NAI ++P GG+I +S   
Sbjct: 298 QIKSQHTVAGKQYEIVRDYPIKSIWLEIDPDKMTQVLDNILNNAIKYSPDGGKITVSMKT 357

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
           T   ++I+ + D G+G+   +L      F ++  ++     G+GLGL +AK +V  + G 
Sbjct: 358 TET-QLIISISDEGLGIPKKDLPLIFDRFYRVDKARSRAQGGSGLGLAIAKEIVKQHKGF 416

Query: 792 FYIFSTPAKGTLIEIIFP 809
            +  ST  KG+   I+ P
Sbjct: 417 IWAQSTYGKGSTFTIVLP 434


>gi|289626570|ref|ZP_06459524.1| PAS [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|289650162|ref|ZP_06481505.1| PAS [Pseudomonas syringae pv. aesculi str. 2250]
 gi|330867641|gb|EGH02350.1| PAS protein [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 1189

 Score =  314 bits (805), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 130/680 (19%), Positives = 241/680 (35%), Gaps = 56/680 (8%)

Query: 149 LWPIEGTNLYVPIDLAALPI--YSRNREFSGFRG--FGIVHVNRVDNDPRALGKRLDKKF 204
            W  +   + V ++ A  P+  +     F G       +V +             L    
Sbjct: 281 RWIAQHPTVRVVVNEAYAPLTFFDAKGNFRGITADLLELVRLRTGLRFDVKRSPSLTDML 340

Query: 205 SHLHEIKKGHS---SVEKEKYDIFSQQSP-----PPHLRMKNKVSSLTEYYAHKDDVLKT 256
           + + E +           E+ D  S   P        +  K++ S           +  T
Sbjct: 341 NQVSEGQADLIGALVSSDEREDHLSFSRPYIDNSFVLVTRKDQGSPSYLEQMDGKRLAIT 400

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
           +  P+L       P        N  Q       G  +                       
Sbjct: 401 QGSPMLDWLRRKYPRVVPLEIDNPFQALDMLSLGRTEGAVISLLSADY------------ 448

Query: 317 EGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
                            F               L++   S +  E++  L   L +    
Sbjct: 449 -----------FLSSGIFEERLQMTATIGEDPALISMATSRNATELSSILDKALASIAPQ 497

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           D  AI       +            +  W+    L    +                +  +
Sbjct: 498 DLAAINNRWRAYAP----------SSASWHDYERLIYQILISAGLLLLGLLAWNAWMRRQ 547

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
                  +R +  +   + +++E T   I + +REG++   N +  ++F    EDI+ K 
Sbjct: 548 IRQREAAERALGDQFEFMRALVEGTPHPIYVRDREGMLRMCNDSYLRVFSAQREDIIGKS 607

Query: 497 FTVFLEQNTPSV--MNHYLTEILSLDLRQTLEKITLGSTKEEKLL-SLRIIIKKLPFSSC 553
            T  +  N             +++ +    L++      ++  +   +      L     
Sbjct: 608 ATEGVLGNAFEAREYAADYQRVMASNTALILDRPLRIGDRQMTIYHWILPFRDSLGEVQG 667

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
                 DISE +Q    L  AK+ A+  S  KS FLA +SHEIRTP+ A+IG  E+   +
Sbjct: 668 IIGGWIDISERRQLIEDLQAAKEQADAASRAKSTFLATMSHEIRTPMNAVIGMLELALKR 727

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
                 +            S N +LD++ D+LDI++IESG+++L+ E  +L   V   + 
Sbjct: 728 ADHGELD---RSAIEVAYSSANDLLDLIGDILDIARIESGRLSLNPERANLRRLVESVLR 784

Query: 674 LVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTH 731
           +    A +K + +     + I   +L D    KQI  N++SNAI FTP G  +I++    
Sbjct: 785 VFDGLARQKDLDLVLELDSRINADVLIDPLRFKQILSNLVSNAIKFTPMGRIKIVLQAAE 844

Query: 732 TSNE---EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
           + +     + + V+D+G+G++  + ++  +PF Q  N+ Q+   G GLGL + +++    
Sbjct: 845 SPDPQLLHLHITVQDSGIGISAEDQQRLFEPFAQADNTGQMARTGAGLGLVICRSLCMMM 904

Query: 789 MGKFYIFSTPAKGTLIEIIF 808
            G   + S P +GT I +  
Sbjct: 905 GGNLSLDSVPGQGTRISMNL 924



 Score = 40.8 bits (94), Expect = 0.94,   Method: Composition-based stats.
 Identities = 31/274 (11%), Positives = 63/274 (22%), Gaps = 21/274 (7%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCD--VSDILHIDPNNHIGDLLKRQNTWYGKT 147
           D  G L+  ++   +        +IG    +  + +             +   NT     
Sbjct: 580 DREGMLRMCNDSYLRVFSAQREDIIGKSATEGVLGNAFEAREYAADYQRVMASNTALILD 639

Query: 148 TLWPIEGTN--LYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
               I      +Y  I    LP      E  G  G  I              +   ++  
Sbjct: 640 RPLRIGDRQMTIYHWI----LPFRDSLGEVQGIIGGWI--DISERRQLIEDLQAAKEQAD 693

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
                K    +    +            L +  K +   E      +V  +    LL   
Sbjct: 694 AASRAKSTFLATMSHEIRTPMNAVI-GMLELALKRADHGELDRSAIEVAYSSANDLLDLI 752

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG------- 318
              L +     +  L+   ++     L  +    F+ L+ +    L    D         
Sbjct: 753 GDIL-DIARIESGRLSLNPERANLRRLVESVLRVFDGLARQKDLDLVLELDSRINADVLI 811

Query: 319 -ENLTPETVDKC-PIPFFVYSHGNLFYANPSFLL 350
                 + +             G +     +   
Sbjct: 812 DPLRFKQILSNLVSNAIKFTPMGRIKIVLQAAES 845


>gi|125973908|ref|YP_001037818.1| multi-sensor signal transduction histidine kinase [Clostridium
           thermocellum ATCC 27405]
 gi|125714133|gb|ABN52625.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           thermocellum ATCC 27405]
          Length = 589

 Score =  314 bits (805), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 81/392 (20%), Positives = 185/392 (47%), Gaps = 35/392 (8%)

Query: 426 ENMPQNGIEPEDVDTRINK--RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           + + Q  +    + +++ +    +  + ++L SI+E+ ++GI  ++    ++  N A   
Sbjct: 222 DELGQLAVHFNKMASKLERTISDLNTKKIELESIVESITNGIVAVDGNNKVILINPAAFT 281

Query: 484 LFGYPVE-DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
           +F    + +IL       ++    S +N  L + +  +    LE        + ++L + 
Sbjct: 282 VFNLDADAEILGDDIENHIK---NSQINSLLKDAIQKNKP--LEAEVAI---DGRVLLVN 333

Query: 543 IIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
               +   S        + + DI++ ++ +                +++F++ V+HE++T
Sbjct: 334 ASPIRPKDSDIDNSGGIVFIQDITKVRKLE--------------QIRTEFVSNVTHELKT 379

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           P+T I GF E +KN   G + NP   E +   ID     + +++ND+L +S+IE+   + 
Sbjct: 380 PITPIRGFIETLKN---GAMNNPVVAERFLEIIDIEAERLHELINDILLLSEIETKLKDT 436

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
           + E   L   V +   ++Q  A EK+I +  +  + +  + A++  +KQ+ +N++ N I 
Sbjct: 437 NLEIFDLKSMVDDVFKVMQNIAKEKKISLNNNVRDEVL-MKANINRMKQLIMNLVDNGIK 495

Query: 718 FTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
           +    G + +   +  + +V++ V+DTG+G+ +  + +  + F ++   +     GTGLG
Sbjct: 496 YNVQNGSVSVD-GYREDGKVVISVKDTGIGIPSAHIPRIFERFYRVDKGRSRGMGGTGLG 554

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           L + K +V+   G+  + S   +GT   +  P
Sbjct: 555 LSIVKHIVNLYNGEIKVNSVVGEGTEFIVKIP 586


>gi|255007676|ref|ZP_05279802.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
 gi|313145371|ref|ZP_07807564.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
 gi|313134138|gb|EFR51498.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
          Length = 919

 Score =  314 bits (805), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 107/648 (16%), Positives = 229/648 (35%), Gaps = 43/648 (6%)

Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS 242
           I    R   D     +   +       +     S+ ++               + +++  
Sbjct: 293 ICIELRKAKDDAIRERSFLRNLFRFMPMGYVRMSIIRDAGGKPCDYRIADANDLSSELIG 352

Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ--------- 293
           L        D +      L    ++ +    D    N+++ T   +  + +         
Sbjct: 353 LPLS-----DYVGRLGSELYADTKAPIDYLVDVIEDNVHKETDVFFDRSQRSSHCIIYSP 407

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLT 352
              +    +L            D  E L        P    +Y   G L   N   +   
Sbjct: 408 EKDEVVSLFLDSTETVRAHRALDRSEKLFKSIFANIPAGVELYDKDGYLLDLNNWDMETF 467

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
             K   D+             ++ +    + ++ +R +    +          +R+  + 
Sbjct: 468 GVKDKADVIGVSFFENPNVPLEIRERVRNEDLVDFRLN---YSFERAGDYFHSDRQKMIE 524

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA---IIN 469
           +     +  +          I  ++ +      ++         I +    G A   ++ 
Sbjct: 525 LYTKVSKLFDSQGNFNGYVLINIDNTERIDAINRIRDFENFFLLISDYAKVGYAKLNLLT 584

Query: 470 REGI-ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528
           + G  I    + + +    P+  ++       +       +  +  ++L  + +    ++
Sbjct: 585 KRGYAIKQWYKNMGEPEDIPLSSVVG--VYDKMHPEDRQKVVDFYEKVLKGEEKDFRSEM 642

Query: 529 TLGSTK---EEKLLSLRIIIKKLPFSSC---YSLTMHDISEWKQEKNKLSHAKKIAEKES 582
            +       E   + + +++ K    +         +DI+E K+ +  L  AK+ AE   
Sbjct: 643 RVLKPGTADEWNWVRMNVVVTKFEPDNGEIEIIGINYDITELKETEAMLIEAKEKAETMD 702

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
             KS FLA +SHEIRTPL AI+GFS ++ +            EY   +  + +L+L +++
Sbjct: 703 RLKSAFLANMSHEIRTPLNAIVGFSGLLVDTE----DLEERREYIKIVQENNDLLLQLIS 758

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702
           D+LD+SKIE+G     +    ++    + +   Q+   +  + +      +   +++D  
Sbjct: 759 DILDLSKIEAGTFEFTYGETDVNMLCEDIVRSSQIKVPQ-GVELVFDPHPSECSVVSDRN 817

Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-VILRVRDTGVGMTNYELEKAMKPFG 761
            + Q+  N ++NA+ FT SG    I   +   EE V   VRDTG+G+   +L    + F 
Sbjct: 818 RLHQVISNFVNNALKFTSSGS---IRVGYEEKEECVEFYVRDTGIGIPAGQLPHIFERFV 874

Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           ++         GTGLGL + K++V+   G   + S   KG+      P
Sbjct: 875 KLNTFIH----GTGLGLSICKSIVEQLGGVIGVDSEEGKGSRFWFTIP 918


>gi|188991423|ref|YP_001903433.1| Two-component system sensor histidine kinase-response regulator
           hybrid protein [Xanthomonas campestris pv. campestris
           str. B100]
 gi|167733183|emb|CAP51381.1| Two-component system sensor histidine kinase-response regulator
           hybrid protein [Xanthomonas campestris pv. campestris]
          Length = 1146

 Score =  314 bits (805), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 111/690 (16%), Positives = 216/690 (31%), Gaps = 70/690 (10%)

Query: 178 FRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK 237
            R +  +   +      A   RL +    + +I        +  Y               
Sbjct: 307 ARCWESMQRAKAQRQLAASEARLRRLADTVPQIIFIADPAGQPDYFNQRWYEYTGLNPDT 366

Query: 238 NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297
             +++  + ++     +  + + L  + E +   + +    +            +++   
Sbjct: 367 EAIAAWQQAHSAAGLRMSGQAWALALNGERAYEIECELRQHDGQTRWHLARALPVRDEHG 426

Query: 298 ESFEYLS----HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLT 352
              E++       +         E E       +  P   ++    GN  Y NP +   T
Sbjct: 427 RISEWIGTYTDIHDRRGFEHKLRESEARFRALCETVPAMIWMADVDGNCVYWNPQWYEFT 486

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
                  ++  G  + +         +A +  +  R       A    + I+ +      
Sbjct: 487 GQGEEQALDQ-GWWNAMHPDDAARVRHAFEQALDARG------AFIAEYRIRRHDGQYRW 539

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI---------LEATSD 463
                          +   G   +  D +  +     +   L  I         L+A + 
Sbjct: 540 CIDTASPHFGSDGRFLGHIGSLTDISDRKRIEDATASDRAILSLITTGAPLTVVLDAIAL 599

Query: 464 ------------GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
                        + +++ E   L    A   L      D    P          S  + 
Sbjct: 600 SVEARGETPLYCAVMVLDEEHQTLQF-AAAPHLPRDYSGDFENAPIGPSGPPCARSAHSG 658

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEK----LLSLRIIIKKL------------------- 548
                  +      E     S         +  +      +                   
Sbjct: 659 LQVICEDIANDPRFEDHRALSAAMGIAACCVTPILGSNGAVLGTLNIYYAQPHLASLREQ 718

Query: 549 ---PFSSCYSLTMHDISE----WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
                +S  +  + + +      K      + A+  AE  S  K +FLA +SHE+RTPL 
Sbjct: 719 AMARSASHLAGIVIERTRVDAKLKASLQAETAARNQAEHASRVKDEFLATLSHELRTPLN 778

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           AI+G+S +++   F P    +  +    I+RS      I++DLLD+S I SGK+ L  E 
Sbjct: 779 AILGWSRLMQADAFEP---AKLGKGLVVIERSARAQTQIIDDLLDMSAILSGKIRLQPEH 835

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTP 720
             +       + L+Q  A  ++I +              D   ++Q+  N++SNA+ FT 
Sbjct: 836 FDIAGLARSTVELMQPTAQARQIRLELDAPLQGSLWFFGDAGRLQQVLTNLISNALKFTA 895

Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
             G + +S        + L VRDTG+G+    L      F Q       R  G GLGL +
Sbjct: 896 PDGDVRVSLEVEEQ-RLRLCVRDTGIGIAADFLPHVFDRFRQADAGTTRRVGGLGLGLSI 954

Query: 781 AKAMVDANMGKFYIFST-PAKGTLIEIIFP 809
           ++ ++D + G    +S     G    ++ P
Sbjct: 955 SRQLIDLHGGSLGAYSAGEGHGATFTVVLP 984



 Score =  118 bits (296), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 38/388 (9%), Positives = 89/388 (22%), Gaps = 21/388 (5%)

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK-NKVSSLTEYYAHKDDVLKTEK 258
           L  +   +  +   +          F  ++            +  T             +
Sbjct: 200 LAAEDHSVMHVISDYVQDMPSLKGDFPLEAAQGLRDALLENRTWFTTDAMAPGAPDYVVE 259

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN------HPSLS 312
               +   +SL      H   +      Q       ++      L               
Sbjct: 260 QYRHSGLRASLAIPLHKHGQLVAAIGVHQRAPRQWASTDIELVRLVVARCWESMQRAKAQ 319

Query: 313 AYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
                 E       D  P   F+    G   Y N  +   T      +   A        
Sbjct: 320 RQLAASEARLRRLADTVPQIIFIADPAGQPDYFNQRWYEYTGLNPDTEAIAAWQ-----Q 374

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
           A   +             +    A        Q + +    +        ++        
Sbjct: 375 AHSAAGLRMSGQAWALALNGE-RAYEIECELRQHDGQTRWHLA-RALPVRDEHGRISEWI 432

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
           G   +  D R  + K+     +  ++ E     I + + +G  +  N    +  G   E 
Sbjct: 433 GTYTDIHDRRGFEHKLRESEARFRALCETVPAMIWMADVDGNCVYWNPQWYEFTGQGEEQ 492

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
            L + +   +  +  + + H   + L                 + +             S
Sbjct: 493 ALDQGWWNAMHPDDAARVRHAFEQALDARGAFI--AEYRIRRHDGQYRWCIDTASPHFGS 550

Query: 552 SCY----SLTMHDISEWKQEKNKLSHAK 575
                    ++ DIS+ K+ ++  +  +
Sbjct: 551 DGRFLGHIGSLTDISDRKRIEDATASDR 578



 Score = 65.4 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/279 (6%), Positives = 50/279 (17%), Gaps = 10/279 (3%)

Query: 59  QESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRL 118
           Q + +      SE            +  +  D  G     ++   +  G           
Sbjct: 314 QRAKAQRQLAASEARLRRLADTVP-QIIFIADPAGQPDYFNQRWYEYTGLNPDTEAIAAW 372

Query: 119 CDVSDILHIDPNNHIGD-LLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSG 177
                   +  +       L  +  +  +  L   +G          ALP+   +   S 
Sbjct: 373 QQAHSAAGLRMSGQAWALALNGERAYEIECELRQHDG--QTRWHLARALPVRDEHGRIS- 429

Query: 178 FRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ----SPPPH 233
               G               +  + +F  L E       +     +              
Sbjct: 430 -EWIGTYTDIHDRRGFEHKLRESEARFRALCETVPAMIWMADVDGNCVYWNPQWYEFTGQ 488

Query: 234 LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293
              +             D       +        +   +      +              
Sbjct: 489 GEEQALDQGWWNAMHPDDAARVRHAFEQALDARGAFIAEYRIRRHDGQYRWCIDTASPHF 548

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP 332
            +      ++      S     ++        +      
Sbjct: 549 GSDGRFLGHIGSLTDISDRKRIEDATASDRAILSLITTG 587



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/166 (11%), Positives = 37/166 (22%), Gaps = 7/166 (4%)

Query: 69  DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID 128
           +SE  F            W  D  G     + +  +  G    + +     +        
Sbjct: 450 ESEARFRALCETVPA-MIWMADVDGNCVYWNPQWYEFTGQGEEQALDQGWWNAMHPDDAA 508

Query: 129 PNN-HIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187
                    L  +  +  +  +   +G   Y      A P +  +  F G    G +   
Sbjct: 509 RVRHAFEQALDARGAFIAEYRIRRHDG--QYRWCIDTASPHFGSDGRFLGH--IGSLTDI 564

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH 233
                        D+    L       + V          +   P 
Sbjct: 565 SDRKRIEDAT-ASDRAILSLITTGAPLTVVLDAIALSVEARGETPL 609


>gi|126651383|ref|ZP_01723590.1| two-component sensor histidine kinase (phosphate regulation)
           [Bacillus sp. B14905]
 gi|126591912|gb|EAZ85995.1| two-component sensor histidine kinase (phosphate regulation)
           [Bacillus sp. B14905]
          Length = 510

 Score =  314 bits (805), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 80/365 (21%), Positives = 163/365 (44%), Gaps = 26/365 (7%)

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
           E+E  +L +++E     + +I REG I   NR   + FG  ++++  K F       +  
Sbjct: 167 EVEEERLKTLIENMGSSLMMIGREGNISIVNRVFLERFGMQIDEVQGKVFRTIGLPKSLE 226

Query: 508 VMNHYLTEIL---SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564
               ++          ++  +++           +     I          + MHDI+E 
Sbjct: 227 QFIDHVFLTEMPYRQQIKMEIKQELYNKEVYGAPV-----IGDHGRWLGVVIVMHDITEL 281

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
            + +                + DF+A VSHE+RTP+T+I GFSE + +  +        I
Sbjct: 282 VRLE--------------QIRKDFVANVSHELRTPITSIKGFSETLLDGAY--KDEKMLI 325

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
            +   I +  N +  ++ DLL++SKIE     ++  P+ L + +     L     +EK +
Sbjct: 326 SFLEIIYKESNRLQMLIQDLLELSKIEQHGFTVNIMPMGLQDVLIRGAELTAPRLDEKNM 385

Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744
             +     ++ +++ D   + QI  N+++NAI ++P    + I         + + + D 
Sbjct: 386 SFQVDIDRDV-QVMGDANRIIQIVTNLITNAITYSPENTTVSIRLKENETHGI-IEIEDQ 443

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G+  +E+ +  + F ++  ++     GTGLGL + K +V+A+ G+  + S    GT++
Sbjct: 444 GIGIEKHEIARVFERFYRVDRARSRNSGGTGLGLAIVKHLVEAHHGRIQVESEVGVGTIM 503

Query: 805 EIIFP 809
            ++ P
Sbjct: 504 IVMIP 508


>gi|66045353|ref|YP_235194.1| PAS [Pseudomonas syringae pv. syringae B728a]
 gi|63256060|gb|AAY37156.1| PAS [Pseudomonas syringae pv. syringae B728a]
          Length = 1206

 Score =  314 bits (805), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 131/670 (19%), Positives = 234/670 (34%), Gaps = 36/670 (5%)

Query: 149 LWPIEGTNLYVPIDLAALPI--YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
            W  +   + V ++ A  P+  +     F G     I          R   +   K+   
Sbjct: 297 RWIAQHPTVRVVVNEAYAPLTFFDAKGNFRG-----ITADLLELVRLRTGLRFDVKRSPS 351

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
           L ++    S  + +                +    S T  Y     VL T K P   S  
Sbjct: 352 LTDMLNQVSEGQADMIGALVSSDA------REDRLSFTRPYIDNSFVLVTRKEPGAPSYL 405

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
                      I                      +              +          
Sbjct: 406 E--QMDGKRLAITQGSPVLDWLSRKYPRVVPLEIDNPFQALDMLSLGRAEGAVISLLSAD 463

Query: 327 DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
                  F               L++   S + IE++  L   L +    D  AI     
Sbjct: 464 YFLSSGIFEERLQMTATVGEDPALISMATSRNAIELSSILDKALASIAPQDLAAINNRWR 523

Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
             +               W+    L    +                +  +       +R 
Sbjct: 524 VYTP----------SRANWHDYERLIYQIVVGAGLLLLGLLAWNAWMRRQIRQREAAERA 573

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
           +  +   + +++E T   I + +REG++   N +  ++F    EDI+ K  T  +  N  
Sbjct: 574 LGDQFEFMRALVEGTPHPIYVRDREGMLRMCNDSYLRVFSAQREDIIGKSATEGVLGNAF 633

Query: 507 SV--MNHYLTEILSLDLRQTLEKITLGSTKEEKLL-SLRIIIKKLPFSSCYSLTMHDISE 563
                      +++ +    L++      ++  +   +      L           DISE
Sbjct: 634 EAREYAADYQRVMASNTALILDRPLRIGDRQLTIYHWILPFRDSLGEVQGIIGGWIDISE 693

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            +Q    L  AK+ A+  S  KS FLA +SHEIRTP+ A+IG  E+   +      +   
Sbjct: 694 RRQLIEDLQAAKEQADAASRAKSTFLATMSHEIRTPMNAVIGMLELALKRADHGELD--- 750

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
                    S N +LD++ D+LDI++IESG+++L+ E  +L   V   + +    A +K 
Sbjct: 751 RSAIEVAYSSANDLLDLIGDILDIARIESGRLSLNPERANLRRLVEAVLRVFDGLARQKD 810

Query: 684 ILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVI 738
           + +     + I   +L D    KQI  N++SNAI FTP G   ++     S +     + 
Sbjct: 811 LELVLELDSRINADVLIDPLRFKQILSNLVSNAIKFTPMGRIKVVLLAAESPDPQLLHLH 870

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           + V+D+G+G++  + ++  +PF Q  N+ Q+   G GLGL + +++     G   + STP
Sbjct: 871 ITVQDSGIGISVEDQQRLFEPFAQADNTGQMARTGAGLGLVICRSLCMMMGGNLSLDSTP 930

Query: 799 AKGTLIEIIF 808
             GT I +  
Sbjct: 931 GHGTRISMNL 940



 Score = 42.7 bits (99), Expect = 0.28,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 52/240 (21%), Gaps = 12/240 (5%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCD--VSDILHIDPNNHIGDLLKRQNTWYGKT 147
           D  G L+  ++   +        +IG    +  + +             +   NT     
Sbjct: 596 DREGMLRMCNDSYLRVFSAQREDIIGKSATEGVLGNAFEAREYAADYQRVMASNTALILD 655

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
               I    L +   +  LP      E  G  G  I              +   ++    
Sbjct: 656 RPLRIGDRQLTIYHWI--LPFRDSLGEVQGIIGGWI--DISERRQLIEDLQAAKEQADAA 711

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
              K    +    +                 +++     +   D       Y        
Sbjct: 712 SRAKSTFLATMSHEIRTPMNAVIGML-----ELALKRADHGELDRSAIEVAYSSANDLLD 766

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY-LSHRNHPSLSAYFDEGENLTPETV 326
            + +  D   I   + +       L+   +              L    +    +  + +
Sbjct: 767 LIGDILDIARIESGRLSLNPERANLRRLVEAVLRVFDGLARQKDLELVLELDSRINADVL 826


>gi|116624972|ref|YP_827128.1| multi-sensor signal transduction histidine kinase [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116228134|gb|ABJ86843.1| multi-sensor signal transduction histidine kinase [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 614

 Score =  314 bits (805), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 113/597 (18%), Positives = 212/597 (35%), Gaps = 50/597 (8%)

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
                  L     +        + +  +     Q    L     +  E           +
Sbjct: 18  RAKGVAVLAAPIAALFGALFSVYWVEADVRGADQDVARLYGIRGQLVELRGSLLDGQTKS 77

Query: 314 YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
                + +  +T      P    +   +     + L      ++ D++    L    +  
Sbjct: 78  AEAALDRIGAQT---ATDPVAAAALAEIR---RAALAERGRVAMADLQARISLLDKYEEQ 131

Query: 374 KLSDNNAIKPVMLYR---------SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
           +       + +   R         +     A    L           A+       A+  
Sbjct: 132 RFDQARLQRDLARRRLFRTVILCGTLGPLAALFIHLVLAGRMVRRLQAVQENARRLAHGL 191

Query: 425 PENMPQNGI----------EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII 474
           P      G           E         +R++     +   + +        ++R G +
Sbjct: 192 PLETLPEGTDEIASLGSQLETAAFLLEGRERELRDSERRYRDLFDRAPIPYEEMDRNGAL 251

Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
              N+AV  L     E ++ +    F+  +  +     +   +                +
Sbjct: 252 HRFNQAVCTLLKSTPEQMIGRLAWDFVAPDRQAEFRAAMKRRVLTGEESGP-FECPYVLE 310

Query: 535 EEKLLSLRIIIKKLPFSSC----YSLTMHDISEW-----------------KQEKNKLSH 573
           +   L++ I    +            ++ D++E                  + +  +L+ 
Sbjct: 311 DGTHLTVEIRENLIRNDRGEVTGIVRSLLDVTERNLAAVAARKVEQYALELRSKNEQLAR 370

Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
           A + A   +  KS FLA VSHE+RTPL  IIGFSE++ + + G L     IE    I  S
Sbjct: 371 ALEGARAATVAKSRFLASVSHELRTPLNGIIGFSELLYDAKLGHLSGE-QIEVMGDILTS 429

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693
              +L ++ND+LD+SK+E+G+M    E   L   V E   +++  A  K +++ T    +
Sbjct: 430 ARHLLQLINDILDLSKVEAGRMEFRPERSRLQPLVFEVRDVIRPLAERKNLVLATEVPED 489

Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753
           +     D    +Q+  N LSNA+ FTP+GG + +           L V DTG+G+   E+
Sbjct: 490 LVA-HLDPGRFRQVLYNYLSNAVKFTPAGGSVTVRIARERQLWFQLEVEDTGIGIAAEEI 548

Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            +  + F Q+PNS+    +GTGLGL L + +V+A  G   + S   +G++   + PL
Sbjct: 549 PRLFQEFSQLPNSR-KADQGTGLGLALTRHIVEAQGGSVTVRSELGRGSVFSALLPL 604



 Score = 43.9 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 31/255 (12%), Positives = 68/255 (26%), Gaps = 18/255 (7%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ---NTWY 144
            +D +G L   ++ +   + +   +MIG    D       D        +KR+       
Sbjct: 244 EMDRNGALHRFNQAVCTLLKSTPEQMIGRLAWDFVAP---DRQAEFRAAMKRRVLTGEES 300

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGF---------RGFGIVHVNRVDNDPRA 195
           G      +     ++ +++    I +   E +G          R    V   +V+     
Sbjct: 301 GPFECPYVLEDGTHLTVEIRENLIRNDRGEVTGIVRSLLDVTERNLAAVAARKVEQYALE 360

Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255
           L  + ++    L   +    +  +    +  +   P +  +            H      
Sbjct: 361 LRSKNEQLARALEGARAATVAKSRFLASVSHELRTPLNGIIGFSELLYDAKLGHLSGEQI 420

Query: 256 TEKYPLLTSEESSLPEQEDFHTI---NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
                +LTS    L    D   +      +   +     LQ    E  + +         
Sbjct: 421 EVMGDILTSARHLLQLINDILDLSKVEAGRMEFRPERSRLQPLVFEVRDVIRPLAERKNL 480

Query: 313 AYFDEGENLTPETVD 327
               E        +D
Sbjct: 481 VLATEVPEDLVAHLD 495


>gi|91201482|emb|CAJ74542.1| similar to hybrid sensor [Candidatus Kuenenia stuttgartiensis]
          Length = 967

 Score =  314 bits (805), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 79/269 (29%), Positives = 140/269 (52%), Gaps = 12/269 (4%)

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            +I E  + + +L  A++ A   ++ KS+FLA +SHEIRTP+ AIIG S+++      P 
Sbjct: 301 QEIDERHRIEAELEKAREAAVAANNAKSEFLASMSHEIRTPMNAIIGMSDLLWETTLTP- 359

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
              +  EY      +G  +L I+ND+LD+SK+E+G++ +     +L E + +   ++   
Sbjct: 360 ---KQSEYVKVFRNAGENLLQIINDILDLSKVEAGQITIEHIEFNLREQIEKTCEVMAFR 416

Query: 679 ANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS---- 733
           A+EK + +    A +IP   + D   + QI  N++ NAI FT +G +I+++         
Sbjct: 417 AHEKGLELNCHLAEDIPTSFIGDPVRLHQILTNLIGNAIKFTRTG-EILLTGKRNKLPGK 475

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
              ++  V DTG+G+   +       F Q+ +S   +  GTGLGL + K +V+   G+ +
Sbjct: 476 KGMLLFLVSDTGIGLPEEKQSIIFNIFSQVDSSTTRQYGGTGLGLAICKRLVELMDGEIW 535

Query: 794 IFSTPAKGTL--IEIIFPLYDTSHPHDCI 820
           + STP KG+     + F ++        I
Sbjct: 536 VESTPGKGSTFYFTVTFDVHPKPQEQKEI 564


>gi|325694847|gb|EGD36752.1| sensor histidine kinase VicK [Streptococcus sanguinis SK150]
 gi|327461011|gb|EGF07344.1| sensor histidine kinase VicK [Streptococcus sanguinis SK1057]
          Length = 449

 Score =  314 bits (805), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 90/403 (22%), Positives = 169/403 (41%), Gaps = 34/403 (8%)

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDT-RINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
           +         PE         +  +  R+    +E E  +L SIL   +DG+   NR G 
Sbjct: 56  YSEVLDMQGSPEITDMTNSINDLSEVIRLTHENLEQETKRLSSILSYMTDGVLATNRRGQ 115

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
           I++ N   +K  G   +++        L  +    +   +T +  L +    E       
Sbjct: 116 IITINDMATKQLGVKRDEVQNMSILDLLSISDEYDLRDLITNVPELTIDSQDE------- 168

Query: 534 KEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
              + LSLR+    +   S +       +HD +E  +E+ +              +  F+
Sbjct: 169 -NGEYLSLRVRFALVRRESGFISGLVAVLHDTTEQDKEERE--------------RRLFV 213

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
           + VSHE+RTPLT++  + E +     G L  P   ++        N ++ +V DLL +S+
Sbjct: 214 SNVSHELRTPLTSVKSYLEAL---DEGALSEPVAPDFVKVSLNETNRMMRMVTDLLSLSR 270

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLV---QLYANEKRILIRTSFANNIPRILADLRSVKQ 706
           I++   +L  E  +    ++  ++     +     K+  I   +      +  D   + Q
Sbjct: 271 IDNETSHLEVELTNFTAFITFILNRFDKIKNQDETKKYEIIRDYPITPIWVEIDTDKLTQ 330

Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
           +  NI++NAI ++P GG I +S   T   ++IL + D G+G+   +L K    F ++  +
Sbjct: 331 VIDNIMNNAIKYSPDGGTITVSIKTTDE-QLILSIADEGLGIPKQDLPKIFDRFYRVDKA 389

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +     GTGLGL +AK ++  + G  +  S    G+   I+ P
Sbjct: 390 RSRAQGGTGLGLAIAKEIIKQHQGFIWAKSEYGVGSTFTIVLP 432


>gi|312127465|ref|YP_003992339.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311777484|gb|ADQ06970.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 575

 Score =  314 bits (805), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 89/367 (24%), Positives = 162/367 (44%), Gaps = 27/367 (7%)

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
             +L S+L++   GI   +    IL  NR    +              V         + 
Sbjct: 235 RKRLTSLLDSLDIGIIFFDVNKRILMFNRGAENIL--------ETNLKVGFSLLECVRVY 286

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570
                +   D+ +  E     + K + L   +  I            + DI+  K+ +  
Sbjct: 287 ELFEFLFQQDINEK-ELEVSINNKTKFLKVNKKKISYEDNKEGVLFILSDITFLKKLE-- 343

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
                         +SDF+A VSHE++TPLT+I GF E +K+           I++ N I
Sbjct: 344 ------------RIRSDFVANVSHELKTPLTSIKGFVETLKDGAID--DKDVAIKFLNII 389

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
           +     ++ ++NDLL +S+IE+  M +  E V + E V E I L+++ A +K I +    
Sbjct: 390 EVEVERLVRLINDLLYLSEIENAAMPILEEKVVVKEVVLEIIELLKIKAEKKNIQLDVKV 449

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
              +  +      +KQI +N++ NAI +    G++ ++   + N  V+++V DTG+G+  
Sbjct: 450 QEGL-EMNIYRDWLKQIFINLIDNAIVYNKENGKVWVTVEKS-NSIVVIKVTDTGIGIPK 507

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            E+E+  + F ++   +  +  GTGLGL + K +V    GK ++ S    G+   +  P+
Sbjct: 508 KEIERIFERFYRVDKGRSRKLGGTGLGLSIVKHIVKLYGGKVWVESQEGIGSEFTVTIPI 567

Query: 811 YDTSHPH 817
              + PH
Sbjct: 568 VKKADPH 574


>gi|292491952|ref|YP_003527391.1| PAS sensor protein [Nitrosococcus halophilus Nc4]
 gi|291580547|gb|ADE15004.1| PAS sensor protein [Nitrosococcus halophilus Nc4]
          Length = 1362

 Score =  314 bits (805), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 112/620 (18%), Positives = 218/620 (35%), Gaps = 47/620 (7%)

Query: 226  SQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTK 285
              +            ++      H +  LKT K  L ++ E      E+    N    + 
Sbjct: 619  EPERMLTEEHNTEVTAAEETLIRHLEQELKTTKTELHSTIEELETSNEELKAANEEIMSM 678

Query: 286  KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP------ETVDKCPIP----FFV 335
             +   +     + S E L   N    +      + +        +  +    P     F+
Sbjct: 679  NEELQSTNEELETSKEELQSLNEELNTVNSQLQDKVEELTVTNNDLANLLQSPHITTLFL 738

Query: 336  YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIA 395
                 +    P+   L      D       +       +     A   +   +       
Sbjct: 739  DREFRIKRYTPTITQLFNLIPTDIGRPISHIVHKFSNREALLKEAATVLENLK------P 792

Query: 396  ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI---NKRKM----E 448
                   +  + +       +P++                +    +     ++++    E
Sbjct: 793  ME---QEVHSDEDRWYIQRILPYQTEEH--HIGGVVVTFIDITQRKQIENERQRLLVKIE 847

Query: 449  IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE------ 502
             E  +L ++++  SD +   + +G +   NRA +  FG    + L +P + +L       
Sbjct: 848  RERDKLRTLIDGISDEVWFCDAQGHLSLANRAAATAFGVERTEALYQPLSAWLSRLEIYT 907

Query: 503  QNTPSVMNH---YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLT 557
                            +    L    E I    T++ +   +     K            
Sbjct: 908  PEGQPRTLEEAPLWRSLQGETLTHVEEIIRHPQTRQLRSRQVSSAPLKTKTGEIMGAVAI 967

Query: 558  MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
              DI+E K+ +  L  AK+ A + S HKS FLA  SH++R PL  +   ++ +  +    
Sbjct: 968  ARDITEEKEIETALREAKEKAVQASIHKSQFLATASHDLRQPLQTLSFLNDSLTEK---- 1023

Query: 618  LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
            L +P      +        + D++N LLDI+K+E+G +   F    +   ++   +  +L
Sbjct: 1024 LKDPEIRRLIDQQGALLRNMGDLLNTLLDINKLEAGMVKPQFTVFPVASLLNYLRNEFEL 1083

Query: 678  YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737
            +A EK + +R         I +D   ++QI  N+LSNAI  T  G +I++     S   +
Sbjct: 1084 HAREKGLNLRMV--PCSVMICSDRILLEQILENLLSNAIKHTDRG-KILLGCRRRSPN-L 1139

Query: 738  ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
             + V DTG+G+   +L+   + F Q  N  + +  G GLGL + + +         I ST
Sbjct: 1140 RIEVWDTGIGIPQEQLKVIFQEFYQADNPARDQRRGLGLGLSIVERLAHLLDHSLDIRST 1199

Query: 798  PAKGTLIEIIFPLYDTSHPH 817
            P KG++  I  P+   +   
Sbjct: 1200 PGKGSMFAIEVPMAKENKEE 1219



 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/198 (10%), Positives = 45/198 (22%), Gaps = 10/198 (5%)

Query: 86   TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLC------DVSDILHIDPNNHIGDLLKR 139
             W  DA G+L   +       G    + +   L       ++              L + 
Sbjct: 864  VWFCDAQGHLSLANRAAATAFGVERTEALYQPLSAWLSRLEIYTPEGQPRTLEEAPLWRS 923

Query: 140  --QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG 197
                T      +     T       +++ P+ ++  E  G     I      + +     
Sbjct: 924  LQGETLTHVEEIIRHPQTRQLRSRQVSSAPLKTKTGEIMGA--VAIARDITEEKEIETAL 981

Query: 198  KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257
            +   +K       K    +          Q     +  +  K+                 
Sbjct: 982  REAKEKAVQASIHKSQFLATASHDLRQPLQTLSFLNDSLTEKLKDPEIRRLIDQQGALLR 1041

Query: 258  KYPLLTSEESSLPEQEDF 275
                L +    + + E  
Sbjct: 1042 NMGDLLNTLLDINKLEAG 1059


>gi|302877626|ref|YP_003846190.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
           ES-2]
 gi|302580415|gb|ADL54426.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
           ES-2]
          Length = 834

 Score =  314 bits (805), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 101/512 (19%), Positives = 202/512 (39%), Gaps = 29/512 (5%)

Query: 313 AYFDEGENLTPETVDKCPIPFFVYS---HGNLF--YANPSFLLLTKYKSVDDIEIAGGLS 367
           A     +NL  +   + P   F +     GN+   YA+     +     +  ++I    S
Sbjct: 179 AQLQTSQNLLTKLSHQLPGMLFQFRLFPDGNVSMPYASDGIFEIF---ELPAVQIKEDAS 235

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
            L       D   +   +   +             +       L     P + ++     
Sbjct: 236 LLFTRVHPEDYEILMASIHESARTQQPWRLEYRVMLPMRGLRWLEGQSRPEKLSDGS--- 292

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
           +  +G   +  +       +     +L    +A   G+   +     L+ +  +  L+G 
Sbjct: 293 VIWHGYLSDVTERHQAAVSLHEVSERLALATQAGGVGVWDWDVVNNALTWDDQMFALYGL 352

Query: 488 PVEDILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
             +  +   + ++  +     +     +   L+       +        +  + ++R + 
Sbjct: 353 HRDQFVGAAEAWSSAILPEDTAQAQACMHNALANKQH--YDTEFRVRWPDGSIHNIRALA 410

Query: 546 KKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
                S+      + T  DI+E KQ +  L  AK++AE  +  KS+FLA +SHEIRTP+ 
Sbjct: 411 SVKFDSAGKPLRMTGTNWDITELKQSQQALQRAKEVAESLAQSKSEFLANMSHEIRTPMN 470

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           A+IG SE+  +             +   I+ S   ++ I+ND+LD+SKIE+ ++++    
Sbjct: 471 AVIGLSELALD----STDPAEKQSHLQQINDSSRSLMGILNDILDLSKIEAHQLSVEKIQ 526

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTP 720
            +L E +     +  L A    I        +I ++L  D   ++QI  N+L NA  FT 
Sbjct: 527 FNLTELLDSIQRIFTLSAAGCDIEFNVVRDADIHQLLLGDPLRLRQILTNLLGNAFKFTQ 586

Query: 721 SGGQIIISTTH----TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
            G ++ ++ +     T +  +   V+D G+GM++ ++    +PF Q  +S   R  GTGL
Sbjct: 587 KG-RVTLNVSKIENTTDSTTLRFSVKDNGIGMSDGQVSTLFQPFSQADSSISRRFGGTGL 645

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           GL +++ +     G   + S    G+   +  
Sbjct: 646 GLTISRNLAQLMGGDIKVESQAGAGSTFSVEL 677


>gi|144897547|emb|CAM74411.1| Signal transduction histidine kinase [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 530

 Score =  314 bits (805), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 108/501 (21%), Positives = 195/501 (38%), Gaps = 40/501 (7%)

Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405
             F + T       +++ G     +              +L R      A    +     
Sbjct: 28  DEFTVWTASDGPSALKLLGVQEMAVILSDQRMPGMTGAELLGRVREISDATRVLVTGYSD 87

Query: 406 NRENSLAMTFIPFEKANQFP-ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
                 A+           P   +    +     D     R +E E   L ++++   D 
Sbjct: 88  LDALVKAVNLGQIHAYLSKPWNPLELKVVVRTAADRWRLGRTLERERTLLQALMDNVPDA 147

Query: 465 IAIINREGIILSTNRAVSKLFGY-PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
           I   +        N A + + G     + +       +   +  +      +IL   +  
Sbjct: 148 IFFKDDSLHFTRINPAQATMLGLDSPLEAMGHMLGDLVPPASAQLAEEQERDILDRGVPI 207

Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLP---FSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
             +   +   K        I    +         +    D+++ KQ ++ L  +    ++
Sbjct: 208 IDKVEAVVDDK-GATTWYSITKVPIRLGGDVVGLAGIARDVTKRKQAEDLLRRSHDDLQR 266

Query: 581 E--------------------------------SSHKSDFLARVSHEIRTPLTAIIGFSE 608
                                            S  KS FLA +SHE+RTPL AIIGF+E
Sbjct: 267 AVDERTAWLRQEISRRAQAEEQARAARDVAEASSRAKSTFLANMSHELRTPLNAIIGFAE 326

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
            +   + G     R   +   I  S + +L +++D+LD++++E+GK+NLH   + + E +
Sbjct: 327 -LAESQMGEAEKQRLGSFICDIGESAHHLLRVISDILDVARVEAGKINLHESLIFIPEVI 385

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
             A+ L       K+  + TS  +++PR+  D R +KQ+ LN+++NA  FT + GQI I 
Sbjct: 386 QSAVRLTAPSVTAKQQTVLTSCPDDLPRLKGDERLIKQVLLNLVANASKFTQNNGQITIR 445

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                   V L + D G G+   ++ K ++PFGQ+ N    + EGTGLGLPLA+  ++ +
Sbjct: 446 AELVD-GCVRLSIADNGCGIAPDDIAKVLQPFGQVENLLAPKQEGTGLGLPLAREFMELH 504

Query: 789 MGKFYIFSTPAKGTLIEIIFP 809
            G   + S   +GT + + FP
Sbjct: 505 GGSLDVQSQLNQGTTVILTFP 525


>gi|323351212|ref|ZP_08086868.1| sensor histidine kinase VicK [Streptococcus sanguinis VMC66]
 gi|322122436|gb|EFX94147.1| sensor histidine kinase VicK [Streptococcus sanguinis VMC66]
 gi|325690803|gb|EGD32804.1| sensor histidine kinase VicK [Streptococcus sanguinis SK115]
 gi|325696128|gb|EGD38019.1| sensor histidine kinase VicK [Streptococcus sanguinis SK160]
          Length = 448

 Score =  314 bits (805), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 90/403 (22%), Positives = 169/403 (41%), Gaps = 34/403 (8%)

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDT-RINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
           +         PE         +  +  R+    +E E  +L SIL   +DG+   NR G 
Sbjct: 56  YSEVLDMQGSPEITDMTNSINDLSEVIRLTHENLEQETKRLSSILSYMTDGVLATNRRGQ 115

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
           I++ N   +K  G   +++        L  +    +   +T +  L +    E       
Sbjct: 116 IITINDMATKQLGVKRDEVQNMSILDLLSISDEYDLRDLITNVPELTIDSQDE------- 168

Query: 534 KEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
              + LSLR+    +   S +       +HD +E  +E+ +              +  F+
Sbjct: 169 -NGEYLSLRVRFALVRRESGFISGLVAVLHDTTEQDKEERE--------------RRLFV 213

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
           + VSHE+RTPLT++  + E +     G L  P   ++        N ++ +V DLL +S+
Sbjct: 214 SNVSHELRTPLTSVKSYLEAL---DEGALSEPVAPDFVKVSLNETNRMMRMVTDLLSLSR 270

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLV---QLYANEKRILIRTSFANNIPRILADLRSVKQ 706
           I++   +L  E  +    ++  ++     +     K+  I   +      +  D   + Q
Sbjct: 271 IDNETSHLEVELTNFTAFITFILNRFDKIKNQDETKKYEIIRDYPITPIWVEIDTDKLTQ 330

Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
           +  NI++NAI ++P GG I +S   T   ++IL + D G+G+   +L K    F ++  +
Sbjct: 331 VIDNIMNNAIKYSPDGGTITVSIKTTDE-QLILSIADEGLGIPKQDLPKIFDRFYRVDKA 389

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +     GTGLGL +AK ++  + G  +  S    G+   I+ P
Sbjct: 390 RSRAQGGTGLGLAIAKEIIKQHQGFIWAKSEYGVGSTFTIVLP 432


>gi|223940097|ref|ZP_03631960.1| PAS/PAC sensor signal transduction histidine kinase [bacterium
           Ellin514]
 gi|223891199|gb|EEF57697.1| PAS/PAC sensor signal transduction histidine kinase [bacterium
           Ellin514]
          Length = 636

 Score =  314 bits (804), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 105/642 (16%), Positives = 217/642 (33%), Gaps = 51/642 (7%)

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL--RMKNKVSSLTEYYAHKDDVLKTE 257
                + + +  +     +     I S       +      +            D ++ E
Sbjct: 8   SRALLAAIVDSSEDAIITKNLDGIITSWNQGAEGIFGYTPQEAIGQPVTMLIPPDRMEEE 67

Query: 258 KY--PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
                 +   E     Q      N            L N+              S     
Sbjct: 68  PVILERIKRGERIKHYQTVRRAKNGALLNISLTVSPLINSEGRIIGASKIARDISHEVNT 127

Query: 316 DEGENLTPE----TVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
            E    + E    T+            +G + + N     LT + +   I I    +  +
Sbjct: 128 QERVRQSEEQFRVTLSSIGDAVIATDRNGRITFMNSVAETLTGWDTPQAIGIPLDNAFKI 187

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
                    A  PV     +   +  +     I  +      +            +    
Sbjct: 188 VNEFTRQP-AENPVNKVIQEGKVVGLANHTILISKDG-TERPIDDSGAPIRGSAADLRGV 245

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490
             +  +  + R  +        +L +I++ + D I   N +GII S N    ++FGY   
Sbjct: 246 VLVFRDVTERREAEVAAL----RLAAIVQNSDDAIISKNLDGIITSWNEGAQRIFGYSAN 301

Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
           +I+ K     +        +  L  +   +  +     T+   KE + + + + I  +  
Sbjct: 302 EIIGKSIKTLVPPELQEQEDEILGRLRRGE--RVFHFETIRVAKEGRHIPISLTISPIKD 359

Query: 551 SSCYSL----TMHDISEWKQEKNKLSHAKKIAEK-ESSHKSD-----------------F 588
            S + +       DI+E KQ +  L+ AK+  +   +  +                   F
Sbjct: 360 PSGHIIGASKIARDITERKQAEKALAEAKEKLQSYANELELQVRERTRSLEKTITELESF 419

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
              +SH++R PL AI  FSE++       +G P   +       + + +  ++ DLL ++
Sbjct: 420 SYSLSHDMRAPLRAIESFSEIVLKDYGETIGAPGV-DLLKRTITAAHRMDKLILDLLTLT 478

Query: 649 KIESGKMNLHFEPVSLDEAVSEAIS-LVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707
           ++   +  ++ EP+ L++ +   I   ++    +  I I+      + R+  +  S+ Q 
Sbjct: 479 RL--SQAPINLEPIDLEKLIDGIIQGRLEFQPPQAEIKIQ----KPLFRVTGNEVSLTQC 532

Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEE-VILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
             N+L NA+ F P+G    +      N + V L + D G+G+   E ++  + F +I + 
Sbjct: 533 LTNLLDNAVKFVPTGTVPHVRIHSEPNGDGVRLWIEDNGIGINANEKKQLFQMFQRIHSD 592

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
                 GTG+GL + +  V+   G+  + S P KG+   +  
Sbjct: 593 T---YPGTGIGLAIVRKAVERMGGEAGVESEPGKGSQFWLQL 631



 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/376 (8%), Positives = 94/376 (25%), Gaps = 22/376 (5%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG-KTTLW 150
            G +   ++      G    + IG  +  +     ++    I + +KR       +T   
Sbjct: 29  DGIITSWNQGAEGIFGYTPQEAIGQPVTMLIPPDRMEEEPVILERIKRGERIKHYQTVRR 88

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
              G  L + + ++  P+ +      G     I      + + +   ++ +++F      
Sbjct: 89  AKNGALLNISLTVS--PLINSEGRIIGASK--IARDISHEVNTQERVRQSEEQFRVTLSS 144

Query: 211 KKGHSSVEKEKYDIF---SQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT---- 263
                        I    S             +    +      +    +          
Sbjct: 145 IGDAVIATDRNGRITFMNSVAETLTGWDTPQAIGIPLDNAFKIVNEFTRQPAENPVNKVI 204

Query: 264 --SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
              +   L       + +  +         ++ ++ +    +      +     +     
Sbjct: 205 QEGKVVGLANHTILISKDGTERPIDDSGAPIRGSAADLRGVVLVFRDVTERREAEVAALR 264

Query: 322 TPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
               V             G +   N     +  Y + + I  +      L  P+L +   
Sbjct: 265 LAAIVQNSDDAIISKNLDGIITSWNEGAQRIFGYSANEIIGKSI---KTLVPPELQEQED 321

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
                L R +R           +     +   ++       +     +  + I  +  + 
Sbjct: 322 EILGRLRRGERV---FHFETIRVAKEGRHI-PISLTISPIKDPSGHIIGASKIARDITER 377

Query: 441 RINKRKMEIEVMQLCS 456
           +  ++ +     +L S
Sbjct: 378 KQAEKALAEAKEKLQS 393



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 60/150 (40%), Gaps = 6/150 (4%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
           +   E     L +I++++ D I   N +GII S N+    +FGY  ++ + +P T+ +  
Sbjct: 2   RENDEQSRALLAAIVDSSEDAIITKNLDGIITSWNQGAEGIFGYTPQEAIGQPVTMLIPP 61

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMH 559
           +        L  I   +  +     T+   K   LL++ + +  L  S    +       
Sbjct: 62  DRMEEEPVILERIKRGE--RIKHYQTVRRAKNGALLNISLTVSPLINSEGRIIGASKIAR 119

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
           DIS     + ++  +++      S   D +
Sbjct: 120 DISHEVNTQERVRQSEEQFRVTLSSIGDAV 149



 Score = 65.8 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/166 (15%), Positives = 53/166 (31%), Gaps = 6/166 (3%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI-GDLLKRQNTWYGKTTLW 150
            G +   +E   +  G  A ++IG  +  +      +  + I G L + +  ++ +T   
Sbjct: 282 DGIITSWNEGAQRIFGYSANEIIGKSIKTLVPPELQEQEDEILGRLRRGERVFHFETIRV 341

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH-E 209
             EG   ++PI L   PI   +    G     I                  +K      E
Sbjct: 342 AKEGR--HIPISLTISPIKDPSGHIIGASK--IARDITERKQAEKALAEAKEKLQSYANE 397

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255
           ++       +      ++     +    +  + L    +  + VLK
Sbjct: 398 LELQVRERTRSLEKTITELESFSYSLSHDMRAPLRAIESFSEIVLK 443



 Score = 55.4 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/247 (12%), Positives = 62/247 (25%), Gaps = 20/247 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLC---DVSDILHIDP-NNHIGDLLKRQNTW- 143
            D +G +  ++       G    + IG+ L     + +     P  N +  +++      
Sbjct: 152 TDRNGRITFMNSVAETLTGWDTPQAIGIPLDNAFKIVNEFTRQPAENPVNKVIQEGKVVG 211

Query: 144 -YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
               T L   +GT    PID +  PI     +  G     +        +      RL  
Sbjct: 212 LANHTILISKDGT--ERPIDDSGAPIRGSAADLRGV--VLVFRDVTERREAEVAALRLAA 267

Query: 203 KFSHLHEI-----KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257
              +  +        G  +   E        S    +    K     E    +D++L   
Sbjct: 268 IVQNSDDAIISKNLDGIITSWNEGAQRIFGYSANEIIGKSIKTLVPPELQEQEDEILGRL 327

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
           +       E     +                   +++ S             +     ++
Sbjct: 328 RR-----GERVFHFETIRVAKEGRHIPISLTISPIKDPSGHIIGASKIARDITERKQAEK 382

Query: 318 GENLTPE 324
                 E
Sbjct: 383 ALAEAKE 389


>gi|146280451|ref|YP_001170604.1| signal transduction histidine kinase [Pseudomonas stutzeri A1501]
 gi|145568656|gb|ABP77762.1| probable signal transduction histidine kinase [Pseudomonas stutzeri
           A1501]
          Length = 793

 Score =  314 bits (804), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 108/684 (15%), Positives = 228/684 (33%), Gaps = 43/684 (6%)

Query: 152 IEGTNLYVPIDLAALPIY--SRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
            +G NL     +   P    S  RE     G  ++ +           ++   + + L  
Sbjct: 120 PDGHNLGTLCVIDRKPRRLSSEQREILERLGRQVIRLFEQHLLAHRHAEQAALQQAILDS 179

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
                     +        +    L    +  +              E+   L S E  +
Sbjct: 180 ASSAVLITRPDGIVTSVNPTAERLLGYSEQALAGHPLTTALFRHEALERRAKLLSSELEM 239

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
           P +  F  +    +  ++     +   +   E        ++    ++         D  
Sbjct: 240 PVEAGFAVLTAPLHLGRREMSEWRLRHQSGSEVPVLLGVTAIHDEQEQLRGYLINAYDLA 299

Query: 330 PIPFFVYSHGNLFYANPSFLLLTKYKS---------VDDIEIAGGLST-LLDAPKLSDNN 379
                      +    P  L    ++           + +E   GLS   L +       
Sbjct: 300 YQEQLQLRLQQIAAQVPGMLFQFHWRGNGSSCFPYVSEGVEQIYGLSPGQLASSFAPIVG 359

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRE-----NSLAMTFIPFEKANQFPENMPQNGIE 434
            +  +       +   A+A L               L           Q   ++  +G  
Sbjct: 360 RVHALDRSTLLSSIRKAAAELTPWHSEHRVDHPCKGLIWVEARATPLRQVDGSVLWHGFV 419

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI-- 492
            +    +  + +++ +      +LEA S+ +   + EG +   N    +  G     +  
Sbjct: 420 TDITARKAEQLELDKQQEMNRRLLEALSEAVIACDAEGNLTLFNEKAKQWHGADAAPVSP 479

Query: 493 --LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
                 + ++       +    +    +L     ++   +  + +     +      L  
Sbjct: 480 DEWASHYQLYRADGVTPLQPEEIPLRRALGGEHVIDHEMVLLS-QGTPRHVLSNADPLYT 538

Query: 551 SSCY----SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
           S          +HDI+E K+ +                + +F++ VSHE+RTPLT+I G 
Sbjct: 539 SDGQLLGAVAVLHDITERKRIE--------------RLQREFISTVSHELRTPLTSITGA 584

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
             ++ +   G +   +  E  +   ++   +  +++DLLD+ K+ +GKM        L  
Sbjct: 585 LALVCSNVMGEVPG-QMRELLDIAQQNSQRLGALIDDLLDMDKLHAGKMRFDLLEQPLLP 643

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726
            +  A+     YA    + +R      + ++  D   ++Q+  N+LSNA  F+P G Q+ 
Sbjct: 644 QLELALRSNGSYAERHGVQLRLGDCPAV-QVEIDAMRLQQVLSNLLSNAAKFSPPGEQVE 702

Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
           +S        V + VRD G G+++   E+  + F Q  +S   +  GTGLGL ++K +++
Sbjct: 703 LSARMRD-GHVRVSVRDRGPGISDEFRERVFQKFAQADSSDSRQQGGTGLGLAISKELIE 761

Query: 787 ANMGKFYIFSTPAKGTLIEIIFPL 810
              G+    S P +G       P+
Sbjct: 762 HMGGQIGFESAPGQGACFWFELPV 785



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/405 (7%), Positives = 91/405 (22%), Gaps = 32/405 (7%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTW------- 143
             G +  ++    + +G     + G  L   + +   +       LL  +          
Sbjct: 189 PDGIVTSVNPTAERLLGYSEQALAGHPLT--TALFRHEALERRAKLLSSELEMPVEAGFA 246

Query: 144 ---------YGKTTLWPIE-GTNLYVPIDLAALPIYSRNREFSGFRGFGI-VHVNRVDND 192
                      + + W +   +   VP+ L    I+    +  G+      +        
Sbjct: 247 VLTAPLHLGRREMSEWRLRHQSGSEVPVLLGVTAIHDEQEQLRGYLINAYDLAYQEQLQL 306

Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD 252
                             +   SS      +   Q       ++ +  + +       D 
Sbjct: 307 RLQQIAAQVPGMLFQFHWRGNGSSCFPYVSEGVEQIYGLSPGQLASSFAPIVGRVHALDR 366

Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES---FEYLSHRNHP 309
                      +E +    +             +     L+                   
Sbjct: 367 STLLSSIRKAAAELTPWHSEHRVDHPCKGLIWVEARATPLRQVDGSVLWHGFVTDITARK 426

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
           +     D+ + +    ++            GNL   N          +            
Sbjct: 427 AEQLELDKQQEMNRRLLEALSEAVIACDAEGNLTLFNEKAKQWHGADAAPVSPDEWASHY 486

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
            L           + + L R+          +  +         +            + +
Sbjct: 487 QLYRADGVTPLQPEEIPLRRALGGEHVIDHEMVLLSQ--GTPRHVLSNADPLYTSDGQLL 544

Query: 429 PQNGIEPEDVDTRINKRKMEIE-----VMQLCSILEATSDGIAII 468
               +  +  + +  +R ++ E       +L + L + +  +A++
Sbjct: 545 GAVAVLHDITERKRIER-LQREFISTVSHELRTPLTSITGALALV 588


>gi|220908402|ref|YP_002483713.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7425]
 gi|219865013|gb|ACL45352.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7425]
          Length = 1669

 Score =  314 bits (804), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 95/796 (11%), Positives = 239/796 (30%), Gaps = 97/796 (12%)

Query: 90   DAHGYLKEISEELPKTIGNYA---------FKMIGMRLCDVSDILHIDPNNHIGDLLKRQ 140
            D  G    I+    + +G             +          +   + P           
Sbjct: 877  DPAGQHIRINPAFAEVLGIPPTVNASLSAPEEERPTNFKVYQNGRELAPEELPLQYTATH 936

Query: 141  NTWYG---KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG 197
                       +W  +GT   V +   A P++ ++ +  G    G               
Sbjct: 937  GVEIRDLEVEVVWQ-DGTT--VTLLEYAAPLFDQSGQTRG--SVGAFLNITERKRAEQNL 991

Query: 198  KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS-------PPPHLRMKNKVSSLTEYYAHK 250
            +  +++     +  K  +   +   +               P     +  +  +  +   
Sbjct: 992  RDNEQQLKLALQAAKAGAWSWELATNCLYWSDEYYRVFGLEPGSIEPSYENGFSRLHPDD 1051

Query: 251  DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310
             + ++ E    +   +++   +      +              +  ++           +
Sbjct: 1052 REWVERETTEAIAQGKNT-NLEYRILLPDGTFRWVVGIGQMFFDEWQQPVRMAGIVVDIT 1110

Query: 311  LSAYFDEGENLTPETVDKC-----PIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAG 364
                 +       E               ++ H      ++ + +               
Sbjct: 1111 ERKQVEAELRKKEELYRALAHNFPNGAVHIFDHDLRYLLSDGTEMRKVGLSQEQLEGHLL 1170

Query: 365  G----------LSTLLDAPKLSDNNAIK-----------PVMLYRSDRTCIAASARLHTI 403
                       L  L  A    +    +            + L        A  +    +
Sbjct: 1171 WEVVPSETSTVLEPLYQAALSGETTISELAFAGQIYQIYTLPLRDQQGEIFAGLSMSQNV 1230

Query: 404  QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
                           E+  +   +  +  ++    + +     ++    +  +++E T D
Sbjct: 1231 T---------LLKQAEQTLRTARDELEQQVQERTRELQEANALLQQREREFRTLVENTPD 1281

Query: 464  GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP-SVMNHYLTEILSLDLR 522
             I   +R+   L  N A ++  G P E  + K  +     +       + L  + +    
Sbjct: 1282 VITRHDRQYRCLYINPASTQSLGMPPEFFIGKKPSELGYPDDLVHFWENSLENVFATGQM 1341

Query: 523  QTLEKITLGSTKEEKL----LSLRIIIKKLPFSSCYSLTM---HDISEWKQEKNKLSHAK 575
            Q  E       + +      +    ++ +          M    D++  KQ +       
Sbjct: 1342 QIDEFNVTNGDEIQSYQVCVVPELELVPEQENDRTIISVMTIGRDVTRLKQAEEAAQKLA 1401

Query: 576  KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
            +  ++ +     F    SH+++ PL AI  F++++  +  G L + +   Y  +I     
Sbjct: 1402 EELKRSNQELEQFAYVASHDLQEPLRAITSFTQLLAKRYRGQL-DAKAETYIEFIVDGAT 1460

Query: 636  LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695
             +  ++ DLL  S+  +G+  L  +PV     + +    +Q+   E +  +    A+ +P
Sbjct: 1461 RMQQLIKDLLTYSR--AGRYELKLQPVDCQTLLDQVKKDLQVVITETQATLT---ADPLP 1515

Query: 696  RILADLRSVKQIALNILSNAIHF-TPSGGQIIISTTHT-------------------SNE 735
             I+AD    K +  N++SN++ + +    +I +S                       ++E
Sbjct: 1516 TIIADPTQFKNLLQNLISNSLKYRSEISPKIHVSARKVFLRSENEFIAAPSSLSLPGTHE 1575

Query: 736  EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            E +  V+D G+G+     E+    F ++  S      GTGLGL + + +++ + G+ ++ 
Sbjct: 1576 EWLFSVQDNGIGIEPQYAERIFGIFQRLHTSD--EYSGTGLGLAICRKIIERHHGRIWVE 1633

Query: 796  STPAKGTLIEIIFPLY 811
            S   +G       P+ 
Sbjct: 1634 SQLGQGATFFFTIPIS 1649



 Score =  122 bits (306), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 59/571 (10%), Positives = 155/571 (27%), Gaps = 75/571 (13%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIG-MRLCDVSDILHIDPNNHIGDLLKRQNTW 143
           F W  +A G  + ++ +  +  G    +     ++ +      +        + +     
Sbjct: 310 FVWISNAQGETEYVNRQWLEYSGLTLEQSCDLQKVAEFHHPEEVQSVLEQWAIARATQQP 369

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP---RALGKRL 200
           +             Y    + ++P   +  +    R +G                    L
Sbjct: 370 FEMEARLKRASDGAYRWFLIRSVPALDQQGQVV--RWYGTSTDIHDRKVAQLNEQFLSDL 427

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR--------------------MKNKV 240
           D++   L + +     V     +         H                          V
Sbjct: 428 DRRLRQLTDSQAMEWEVVSSLGEYLQVDRCLWHTVDLEAGMTTVGQDWYRQLDLKSTTGV 487

Query: 241 SSLTEYYAHKDDVLKTEKYPLLTSEESS---------------------LPEQEDFHTIN 279
             L+EY   +         PL+  + ++                     +P  E  H + 
Sbjct: 488 YRLSEYILPEMIRHYRTGQPLVIEDVTTHVYTESVAHNFAQHKIRAILGIPWIESGHWVA 547

Query: 280 L-------NQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP 332
                    +  +      LQ      +  +  +    +    +E   L  E  D   + 
Sbjct: 548 ALAVNSCTTRTWRSDEVRLLQEIVARLWSLIEQKRAVKVLQEQEERTRLATEAAD---LG 604

Query: 333 FFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR 391
            + ++   N          L    +   I     L TL    +   + A+   +  R++ 
Sbjct: 605 MWFWNLTQNELVWTDRCKALFGLPADGQISYEVFLQTLHPDDRDFTHAAVNQALEQRTE- 663

Query: 392 TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK----- 446
                    + I W   +   ++       +   + +   G   +  D +  + +     
Sbjct: 664 -----YNIEYRIVWPDGSIHWISAKGRGFYDADGQPIRMMGTAQDISDRKQAEAERKLAE 718

Query: 447 --MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRKPFTVFLEQ 503
             ++     L    +    GIA+ +RE   + T++  +  + Y  +E ++ +        
Sbjct: 719 IVLQEREALLHLFAQYAPAGIAMFDREMRYVMTSQRWADDYYYGSLESLVGRSHYELF-P 777

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII--KKLPFSSCYSLTMHDI 561
             P          L+  + Q  E + + +  +++ +   +              +   DI
Sbjct: 778 EMPERWRQIHQRCLAGAIEQCDEDLFVRADGKQQWIRWEVRPWYSATDEIGGIIIFAEDI 837

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
           ++ KQ +  +       +++ +     L  +
Sbjct: 838 TQRKQAEAAVLQLNLELQQKVTELQTLLDVI 868



 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 46/409 (11%), Positives = 113/409 (27%), Gaps = 27/409 (6%)

Query: 168 IYSRNREFSGFRGFGIVHV-NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFS 226
           IY R          G+  +            + L+     +    +   SV +    +  
Sbjct: 29  IYDRAGRHLYASPAGLAALGLEAQEVLGRSWRELNFPAEVMERHDRQRESVFQTGIPVKG 88

Query: 227 QQSPPP--HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYT 284
           +   P    +R    V S     A + + +      +   +++    ++    +      
Sbjct: 89  ETRFPTLQGIRYYEYVISPVLGAAGEIEAVINTGRDITERQQAENALRQLTEELEARVLA 148

Query: 285 KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYA 344
           + +    L  + +     +             E +      VD       V  +G +  A
Sbjct: 149 RTEELTALNESLQ-----VEIAERQKAEQALQESQMRFHALVDAMFEGIVVQENGKIIEA 203

Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
           NP F  +  Y S+D++     +  L          +++ VM +  +   +     +  I+
Sbjct: 204 NPGFANMFGY-SLDEVIGKSAVDFLT-------PESLETVMGHIQNEYELPYE--MTGIK 253

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
            +      +      K + +     +     +  + +  +  +  +  QL  + ++    
Sbjct: 254 KDG---TLINLEVVGKQSLYQGRRVRVSAARDITERKRAEIALREKEQQLQQLSDSMPQF 310

Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILR-KPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
           + I N +G     NR   +  G  +E     +    F        +        +     
Sbjct: 311 VWISNAQGETEYVNRQWLEYSGLTLEQSCDLQKVAEFHHPEEVQSVLEQWAIARATQQPF 370

Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEK 568
            +E        +       I            +    T  DI + K  +
Sbjct: 371 EMEARL-KRASDGAYRWFLIRSVPALDQQGQVVRWYGTSTDIHDRKVAQ 418



 Score =  107 bits (268), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 41/320 (12%), Positives = 103/320 (32%), Gaps = 52/320 (16%)

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
             +    +  +L  + +       ++Y   G   YA+P+ L     ++ + +        
Sbjct: 4   PENPLLSKQLDLLDQILAASTDQIYIYDRAGRHLYASPAGLAALGLEAQEVL-GRSWREL 62

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
              A  +  ++  +  +     +T I                      P   A    E +
Sbjct: 63  NFPAEVMERHDRQRESVF----QTGIPVKGETRFPTLQGIRYYEYVISPVLGAAGEIEAV 118

Query: 429 PQNG-------------------------------------IEPEDVDTRINKRKMEIEV 451
              G                                     ++ E  + +  ++ ++   
Sbjct: 119 INTGRDITERQQAENALRQLTEELEARVLARTEELTALNESLQVEIAERQKAEQALQESQ 178

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
           M+  ++++A  +GI +    G I+  N   + +FGY +++++ K    FL   +   +  
Sbjct: 179 MRFHALVDAMFEGIVV-QENGKIIEANPGFANMFGYSLDEVIGKSAVDFLTPESLETVMG 237

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT--MHDISEWKQEKN 569
           ++           L     G  K+  L++L ++ K+  +           DI+E K+ + 
Sbjct: 238 HIQN------EYELPYEMTGIKKDGTLINLEVVGKQSLYQGRRVRVSAARDITERKRAEI 291

Query: 570 KLSHAKKIAEKESSHKSDFL 589
            L   ++  ++ S     F+
Sbjct: 292 ALREKEQQLQQLSDSMPQFV 311



 Score =  101 bits (251), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 36/419 (8%), Positives = 102/419 (24%), Gaps = 60/419 (14%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP--NNHIGDLLKRQNTWYGKT 147
           D  G     S      +G  A +++G    +++    +    +     + +      G+T
Sbjct: 31  DRAGRHLYASPAGLAALGLEAQEVLGRSWRELNFPAEVMERHDRQRESVFQTGIPVKGET 90

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL------- 200
               ++G   Y  +     P+     E       G               ++L       
Sbjct: 91  RFPTLQGIRYYEYV---ISPVLGAAGEIEAVINTG--RDITERQQAENALRQLTEELEAR 145

Query: 201 ------------DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK----------- 237
                       +     + E +K   ++++ +    +         +            
Sbjct: 146 VLARTEELTALNESLQVEIAERQKAEQALQESQMRFHALVDAMFEGIVVQENGKIIEANP 205

Query: 238 ----------NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287
                     ++V   +       + L+T    +    E  LP +      +      + 
Sbjct: 206 GFANMFGYSLDEVIGKSAVDFLTPESLETVMGHIQNEYE--LPYEMTGIKKDGTLINLEV 263

Query: 288 YFGTL--QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYA 344
                  Q                       E E    +  D  P   ++ +  G   Y 
Sbjct: 264 VGKQSLYQGRRVRVSAARDITERKRAEIALREKEQQLQQLSDSMPQFVWISNAQGETEYV 323

Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
           N  +L  +        ++          P+   +   +  +   + +            +
Sbjct: 324 NRQWLEYSGLTLEQSCDLQKVAE--FHHPEEVQSVLEQWAIARATQQ---PFEMEARLKR 378

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN---KRKMEIEVMQLCSILEA 460
            +               +Q  + +   G   +  D ++    ++ +     +L  + ++
Sbjct: 379 ASDGAYRWFLIRSVPALDQQGQVVRWYGTSTDIHDRKVAQLNEQFLSDLDRRLRQLTDS 437



 Score = 97.0 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/434 (8%), Positives = 106/434 (24%), Gaps = 46/434 (10%)

Query: 189  VDNDPRALGKRLDKKFSHLHEIKKGHSSVEK--EKYDIFSQQSPPPHLRMKNKVSSLTEY 246
                   + +  +++     E            +   +++ +         +   S   +
Sbjct: 579  EQKRAVKVLQEQEERTRLATEAADLGMWFWNLTQNELVWTDRCKALFGLPADGQISYEVF 638

Query: 247  Y--AHKDDVLKTEKYPLLTSEESSLPEQE-DFHTINLNQYTKKQYFGTLQNNSKESFEYL 303
                H DD   T        E+ +    E      + + +          +   +    +
Sbjct: 639  LQTLHPDDRDFTHAAVNQALEQRTEYNIEYRIVWPDGSIHWISAKGRGFYDADGQPIRMM 698

Query: 304  SHRNHPSLSAYFDEGENLTPETVDK-----------CPIPFFVYSHG-NLFYANPSFLLL 351
                  S     +    L    + +            P    ++         +  +   
Sbjct: 699  GTAQDISDRKQAEAERKLAEIVLQEREALLHLFAQYAPAGIAMFDREMRYVMTSQRWADD 758

Query: 352  TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411
              Y S++ +        L            + +               L           
Sbjct: 759  YYYGSLESLVGRSHYE-LFPEM----PERWRQIHQRCLAGAIEQCDEDLFV--RADGKQQ 811

Query: 412  AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR-------KMEIEVMQLCSILEATSDG 464
             + +      +   E         +    +  +        +++ +V +L ++L+    G
Sbjct: 812  WIRWEVRPWYSATDEIGGIIIFAEDITQRKQAEAAVLQLNLELQQKVTELQTLLDVIPIG 871

Query: 465  I-AIINREGIILSTNRAVSKLFGYP---------VEDILRKPFTVFLEQNTPSVMNHYLT 514
            I    +  G  +  N A +++ G P          E+     F V+      +     L 
Sbjct: 872  IGIAEDPAGQHIRINPAFAEVLGIPPTVNASLSAPEEERPTNFKVYQNGRELAPEELPLQ 931

Query: 515  EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNK 570
               +  + +  +       ++   ++L      L   S           +I+E K+ +  
Sbjct: 932  YTATHGV-EIRDLEVEVVWQDGTTVTLLEYAAPLFDQSGQTRGSVGAFLNITERKRAEQN 990

Query: 571  LSHAKKIAEKESSH 584
            L   ++  +     
Sbjct: 991  LRDNEQQLKLALQA 1004



 Score = 68.5 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 54/150 (36%), Gaps = 6/150 (4%)

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF-LEQNT 505
           +  ++  L  IL A++D I I +R G  L  + A     G   +++L + +         
Sbjct: 9   LSKQLDLLDQILAASTDQIYIYDRAGRHLYASPAGLAALGLEAQEVLGRSWRELNFPAEV 68

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM---HDIS 562
               +     +    +   ++  T   T +       +I   L  +      +    DI+
Sbjct: 69  MERHDRQRESVFQTGIP--VKGETRFPTLQGIRYYEYVISPVLGAAGEIEAVINTGRDIT 126

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
           E +Q +N L    +  E     +++ L  +
Sbjct: 127 ERQQAENALRQLTEELEARVLARTEELTAL 156



 Score = 38.5 bits (88), Expect = 5.1,   Method: Composition-based stats.
 Identities = 13/139 (9%), Positives = 40/139 (28%), Gaps = 7/139 (5%)

Query: 88   NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP--NNHIGDLLKRQNTWYG 145
              D       I+    +++G      IG +  ++     +     N + ++         
Sbjct: 1285 RHDRQYRCLYINPASTQSLGMPPEFFIGKKPSELGYPDDLVHFWENSLENVFATGQMQID 1344

Query: 146  KTTLWPIEG-TNLYVPI--DLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
            +  +   +   +  V +  +L  +P    +R        G               ++L +
Sbjct: 1345 EFNVTNGDEIQSYQVCVVPELELVPEQENDRTIISVMTIG--RDVTRLKQAEEAAQKLAE 1402

Query: 203  KFSHLHEIKKGHSSVEKEK 221
            +    ++  +  + V    
Sbjct: 1403 ELKRSNQELEQFAYVASHD 1421


>gi|165919133|ref|ZP_02219219.1| PAS domain S-box/His Kinase A (phosphoacceptor) domain/ATPase,
           histidine kinase-, DNA gyrase B-, and HSP90-like
           domain/response regulator receiver domain protein
           [Coxiella burnetii RSA 334]
 gi|165917145|gb|EDR35749.1| PAS domain S-box/His Kinase A (phosphoacceptor) domain/ATPase,
           histidine kinase-, DNA gyrase B-, and HSP90-like
           domain/response regulator receiver domain protein
           [Coxiella burnetii RSA 334]
          Length = 669

 Score =  314 bits (804), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 101/516 (19%), Positives = 211/516 (40%), Gaps = 29/516 (5%)

Query: 321 LTPETVDKCPIPFFVYSHG--NLFYANPSFLLLTKYKSVDDIEIAG-GLSTLLDAPKLSD 377
           L     +     F++ S       Y +P+F  +               ++ ++   +   
Sbjct: 19  LFLNLAETSQDIFWIRSVDFYTHVYVSPAFENIFGISRQTLYANPNKWMNAVIIEDRDRL 78

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
            + I    +            R+     +    +           +  + +   G+  + 
Sbjct: 79  RHLIMEWQVKNKKGAAYTVDYRI----IDAYGEMHWINETSYPVYEDDQCLGYAGVVKDV 134

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREG-IILSTNRAVSKLFGYPVEDILR-- 494
              ++  ++ +  V      +E  S    +    G   +  +    K++G   E + +  
Sbjct: 135 SSEKLRVKEFDNAVHYFRHFVERVSGVFWVKGSRGDKQIYISPTYEKIWGVSCESLYQNP 194

Query: 495 KPFTVFLEQNTP---SVMNHYLTEILSLDLR-QTLEKITLGSTKEEKLLSLRIIIKKLPF 550
           K +  ++         V  ++              E        + ++  ++     +  
Sbjct: 195 KSWIDYVLPEDISNGKVNVNFYETAADQRTPDSKYEFRFRIRRPDGEIRWIKDTYFPIME 254

Query: 551 SS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
           +     ++    D++     + +L  AK+ AE+ +  KSDFLA +SHE+RTPL AI+G S
Sbjct: 255 NGKLVGFAGIAEDVTNDALREKELWEAKEFAEQANRTKSDFLAMMSHELRTPLNAILGMS 314

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
           +++K        +       + I ++G  +L ++NDLLD +K+E+GK++   E + L E 
Sbjct: 315 QILKTHNL----SDEQQGQIDVISQAGQNLLALLNDLLDFAKLEAGKLSFTEETMDLHEL 370

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII 726
           V +    + L A++K + ++  +  NIP +++ D + ++Q+ +N+LSNA+ FT  G  + 
Sbjct: 371 VMKIKGDMLLLAHKKGMQLKFDYPENIPSKVMGDAKRIRQVLVNLLSNALKFTEKG-YVQ 429

Query: 727 ISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
           ++      +     +   V+DTG+GM   +L      F QI +  Q + +G GLGL + K
Sbjct: 430 LTANCLKKDHKKMTLCFTVKDTGIGMEKTKLSSIFNRFQQINSVYQRKYDGVGLGLSIVK 489

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFP--LYDTSHP 816
            +++   G   + S P  G+    I P  L   S+P
Sbjct: 490 ELLEKMGGTISVTSEPGVGSEFTCIIPFRLQADSNP 525


>gi|160886372|ref|ZP_02067375.1| hypothetical protein BACOVA_04382 [Bacteroides ovatus ATCC 8483]
 gi|315921766|ref|ZP_07918006.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|156108257|gb|EDO10002.1| hypothetical protein BACOVA_04382 [Bacteroides ovatus ATCC 8483]
 gi|313695641|gb|EFS32476.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
          Length = 621

 Score =  314 bits (804), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 117/519 (22%), Positives = 205/519 (39%), Gaps = 40/519 (7%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
            S        E +        P+   +Y   G +   N   + + +  + +DI       
Sbjct: 125 ASAHQALQNSERILHNIYKNLPVGIELYDKDGQMVDLNKKDMEMFRISNKEDILGVN--- 181

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI-----QWNRENSLAMTFIPFEKAN 422
            + + P L +    K      +D            I       +    + +T       +
Sbjct: 182 -IFENPILPEEIKQKIKDNENAD---FTFRYDFSKINKYYQPNSTTGFIDLTTKVTTLYD 237

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN---REGI-ILSTN 478
              E +    I  +  +  I   K++        + +    G A  +   R+G  + S  
Sbjct: 238 HNHEPINYLLINVDKTEDTIAYNKIQEFESFFDLVGDYAKVGYAHFDALSRDGYALRSWY 297

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
           R V +  G P+ +I+             +VM  +L +++       L +       +   
Sbjct: 298 RNVGEEEGTPLPEIIG--IHSHFHPEDRAVMIDFLDKVIK-GESSKLSRDVRIRRADGNY 354

Query: 539 LSLRIIIK-----KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
              R+ +                   DI+E K+ +  L  AK+ AE+    KS FLA +S
Sbjct: 355 TWTRVNVLVRNYQPQDNIIEMLCINFDITELKETERMLIGAKEKAEEADRLKSAFLANMS 414

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HEIRTPL AI+GFS    +             YA  I+ +  L+L +++D+LD+SKIE+G
Sbjct: 415 HEIRTPLNAIVGFS----SLLEEAEDAEEKHLYATIIEENNKLLLQLISDILDLSKIEAG 470

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI--LADLRSVKQIALNI 711
             ++  E V   +  +E +  +Q+ A E+   +    A  +P +   +D   + Q+ LN 
Sbjct: 471 TFDIIPEQVDAQQLCNELLQSMQVRATEQ---VEILLAPELPELTFTSDKNRLYQVLLNF 527

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           ++NA+ FT  G  I+I        EV   V+DTG+G+   + E     F ++ N      
Sbjct: 528 VTNALKFTSEGS-IVIDYRIN-GNEVRFSVQDTGMGIEPEKQEAIFTRFVKLNNFIA--- 582

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            GTGLGLP+ +++V    GK  + S P KG+      P+
Sbjct: 583 -GTGLGLPICQSIVTQLGGKIGVESEPGKGSCFWFTHPI 620


>gi|307709234|ref|ZP_07645693.1| two-component sensor histidine kinase [Streptococcus mitis SK564]
 gi|307620180|gb|EFN99297.1| two-component sensor histidine kinase [Streptococcus mitis SK564]
          Length = 449

 Score =  314 bits (804), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 90/376 (23%), Positives = 166/376 (44%), Gaps = 33/376 (8%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           R+ +  +E E  +L SIL   +DG+   NR G I   N    K  G   ED+L K     
Sbjct: 83  RLTQENLEQESKRLHSILSYMTDGVLATNRRGKITMINDMAKKQLGVQKEDVLNKSILEL 142

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SL 556
           L+      +   +T+I         E I        + LSLR+    +   S +      
Sbjct: 143 LKIEDEYELRDLITQIP--------ELIIDSQDANGEYLSLRVRFALIRRESGFISGLVA 194

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            +HD +E ++E+ +                 F++ VSHE+RTPLT++  + E +      
Sbjct: 195 VLHDTTEQEKEERERRL--------------FVSNVSHELRTPLTSVKSYLEALDEGALC 240

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV- 675
               P   ++        N ++ +V DLL +S+I++   +L  E ++    ++  ++   
Sbjct: 241 ETVAP---DFIKVSLDETNRMMRMVTDLLHLSRIDNATSHLDVELINFTAFITFILNRFD 297

Query: 676 --QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
             +    +K+  +   +      I  D   + Q+  NIL+NAI ++P GG+I ++   T 
Sbjct: 298 QIRGQDEDKKYELVRDYPITSVWIEIDTDKMTQVIDNILNNAIKYSPDGGKITVTMKTTD 357

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
           ++ + L + D G+G+   +L +    F ++  ++     GTGLGL +AK ++  + G  +
Sbjct: 358 DQMI-LSISDQGLGIPKQDLPRIFDRFYRVDRARSRAQGGTGLGLSIAKEIIKQHKGFIW 416

Query: 794 IFSTPAKGTLIEIIFP 809
             S   KG+   I+ P
Sbjct: 417 AKSEYGKGSTFTIVLP 432


>gi|299146861|ref|ZP_07039929.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
 gi|298517352|gb|EFI41233.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
          Length = 621

 Score =  314 bits (804), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 117/519 (22%), Positives = 205/519 (39%), Gaps = 40/519 (7%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
            S        E +        P+   +Y   G +   N   + + +  + +DI       
Sbjct: 125 ASAHQALQNSERILHNIYKNLPVGIELYDKDGQMVDLNKKDMEMFRISNKEDILGVN--- 181

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI-----QWNRENSLAMTFIPFEKAN 422
            + + P L +    K      +D            I       +    + +T       +
Sbjct: 182 -IFENPILPEEIKQKIKDNENAD---FTFRYDFSKINKYYQPNSTTGFIDLTTKVTTLYD 237

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN---REGI-ILSTN 478
              E +    I  +  +  I   K++        + +    G A  +   R+G  + S  
Sbjct: 238 HNHEPINYLLINVDKTEDTIAYNKIQEFESFFDLVGDYAKVGYAHFDALSRDGYALRSWY 297

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
           R V +  G P+ +I+             +VM  +L +++       L +       +   
Sbjct: 298 RNVGEEEGTPLPEIIG--IHSHFHPEDRAVMIDFLDKVIK-GESSKLSRDVRIRRADGNY 354

Query: 539 LSLRIIIK-----KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
              R+ +                   DI+E K+ +  L  AK+ AE+    KS FLA +S
Sbjct: 355 TWTRVNVLVRNYQPQDNIIEMLCINFDITELKETERMLIGAKEKAEEADRLKSAFLANMS 414

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HEIRTPL AI+GFS    +             YA  I+ +  L+L +++D+LD+SKIE+G
Sbjct: 415 HEIRTPLNAIVGFS----SLLEEAEDAEEKHLYATIIEENNKLLLQLISDILDLSKIEAG 470

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI--LADLRSVKQIALNI 711
             ++  E V   +  +E +  +Q+ A E+   +    A  +P +   +D   + Q+ LN 
Sbjct: 471 TFDIIPEQVDAQQLCNELLQSMQVRATEQ---VEILLAPELPELTFTSDKNRLYQVLLNF 527

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           ++NA+ FT  G  I+I        EV   V+DTG+G+   + E     F ++ N      
Sbjct: 528 VTNALKFTSEGS-IVIDYRIN-GNEVRFSVQDTGMGIEPEKQEAIFTRFVKLNNFIA--- 582

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            GTGLGLP+ +++V    GK  + S P KG+      P+
Sbjct: 583 -GTGLGLPICQSIVTQLGGKIGVESEPGKGSCFWFTHPI 620


>gi|260173495|ref|ZP_05759907.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|293372779|ref|ZP_06619160.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f]
 gi|292632288|gb|EFF50885.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f]
          Length = 606

 Score =  314 bits (804), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 117/519 (22%), Positives = 205/519 (39%), Gaps = 40/519 (7%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
            S        E +        P+   +Y   G +   N   + + +  + +DI       
Sbjct: 110 ASAHQALQNSERILHNIYKNLPVGIELYDKDGQMVDLNKKDMEMFRISNKEDILGVN--- 166

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI-----QWNRENSLAMTFIPFEKAN 422
            + + P L +    K      +D            I       +    + +T       +
Sbjct: 167 -IFENPILPEEIKQKIKDNENAD---FTFRYDFSKINKYYQPNSTTGFIDLTTKVTTLYD 222

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN---REGI-ILSTN 478
              E +    I  +  +  I   K++        + +    G A  +   R+G  + S  
Sbjct: 223 HNHEPINYLLINVDKTEDTIAYNKIQEFESFFDLVGDYAKVGYAHFDALSRDGYALRSWY 282

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
           R V +  G P+ +I+             +VM  +L +++       L +       +   
Sbjct: 283 RNVGEEEGTPLPEIIG--IHSHFHPEDRAVMIDFLDKVIK-GESSKLSRDVRIRRADGNY 339

Query: 539 LSLRIIIK-----KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
              R+ +                   DI+E K+ +  L  AK+ AE+    KS FLA +S
Sbjct: 340 TWTRVNVLVRNYQPQDNIIEMLCINFDITELKETERMLIGAKEKAEEADRLKSAFLANMS 399

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HEIRTPL AI+GFS    +             YA  I+ +  L+L +++D+LD+SKIE+G
Sbjct: 400 HEIRTPLNAIVGFS----SLLEEAEDAEEKHLYATIIEENNKLLLQLISDILDLSKIEAG 455

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI--LADLRSVKQIALNI 711
             ++  E V   +  +E +  +Q+ A E+   +    A  +P +   +D   + Q+ LN 
Sbjct: 456 TFDIIPEQVDAQQLCNELLQSMQVRATEQ---VEILLAPELPELTFTSDKNRLYQVLLNF 512

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           ++NA+ FT  G  I+I        EV   V+DTG+G+   + E     F ++ N      
Sbjct: 513 VTNALKFTSEGS-IVIDYRIN-GNEVRFSVQDTGMGIEPEKQEAIFTRFVKLNNFIA--- 567

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            GTGLGLP+ +++V    GK  + S P KG+      P+
Sbjct: 568 -GTGLGLPICQSIVTQLGGKIGVESEPGKGSCFWFTHPI 605


>gi|237801067|ref|ZP_04589528.1| PAS protein [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331023924|gb|EGI03981.1| PAS protein [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 1026

 Score =  314 bits (804), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 129/678 (19%), Positives = 246/678 (36%), Gaps = 58/678 (8%)

Query: 149 LWPIEGTNLYVPIDLAALPI--YSRNREFSGFRG--FGIVHVNRVDNDPRALGKRLDKKF 204
            W  +   + V ++ A  P+  +     F G       +V +             L    
Sbjct: 297 RWIAQHPTIRVVVNEAYAPLTFFDAKGNFRGITADLLELVRLRTGLKFDVKRSPSLTDMQ 356

Query: 205 SHLHEIKKGHS---SVEKEKYDIFSQQSP-----PPHLRMKNKVSSLTEYYAHKDDVLKT 256
           + + E K           E+ D  S   P        +  K++ S           +  T
Sbjct: 357 NQVTEGKADMIGALDSSDEREDRLSFSRPYVDNSFVLVTRKDQGSPSHLEQMDGKRLAIT 416

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
           +  P+L    ++ P        N  Q       G  +             +         
Sbjct: 417 QGSPMLGWLRNNYPNVVPLEIDNPFQALDMLALGRTEGAVISLLSANYFLSSGIFEERLQ 476

Query: 317 EGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
               L  +                     P+   ++   S + IE++  L   L +    
Sbjct: 477 MTATLGED---------------------PAL--ISMATSRNAIELSSILDKALASIAPQ 513

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           D  AI       +            +  W+    L    +                ++ +
Sbjct: 514 DLAAINNRWRAYTP----------SSATWHDYERLIYQILIGASLLLLGLLAWNAWMQRQ 563

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
                  +R +  +   + ++++ T   I + +REG++   N +  + F    ED++ K 
Sbjct: 564 IRQREAAERALGDQFEFMRALVDGTPHPIYVRDREGLLRICNDSYLQTFSARREDVIGKS 623

Query: 497 FTVFLEQNTPSV--MNHYLTEILSLDLRQTLEKITLGSTKEEKLL-SLRIIIKKLPFSSC 553
               +  N            ++++      L++      ++  +   +      L     
Sbjct: 624 TAAGVPGNAFEASEYAADYEQVMASGTALILDRPLRIGERQLTIYHWILPFRDSLGEVQG 683

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
                 DISE +Q   +L  AK+ A+  S  KS FLA +SHEIRTP+ A+IG  E+   +
Sbjct: 684 IIGGWIDISERRQLIEELQAAKEQADAASRAKSTFLATMSHEIRTPMNAVIGMLELALKR 743

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
                 +            S N +LD++ D+LDI++IESG++ L+ E  +L + V   + 
Sbjct: 744 ADHGELD---RSAIEVAYSSANDLLDLIGDILDIARIESGRLALNPERANLRQLVESVVR 800

Query: 674 LVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
           +    A +K + +  +  + I   +L D    KQI  N++SNAI FT  G Q+ IS    
Sbjct: 801 VFDGLARQKDLSLVLALDSRINTDVLIDPLRFKQILSNLVSNAIKFTQDG-QVKISLQAG 859

Query: 733 SNE-----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
                    + + V+D+G+G+++ + ++  +PF Q+ N+ Q+   G GLGL + +++   
Sbjct: 860 DTAAPQQLHLHVMVQDSGIGISSEDQQRLFEPFAQVDNTGQMARTGAGLGLVICRSLCVM 919

Query: 788 NMGKFYIFSTPAKGTLIE 805
             G   + S P +GT + 
Sbjct: 920 MGGNLQLDSAPGQGTRVS 937



 Score = 38.5 bits (88), Expect = 4.5,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 56/231 (24%), Gaps = 8/231 (3%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD--ILHIDPNNHIGDLLKRQNTWYGKT 147
           D  G L+  ++   +T       +IG                     + +    T     
Sbjct: 596 DREGLLRICNDSYLQTFSARREDVIGKSTAAGVPGNAFEASEYAADYEQVMASGTALILD 655

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
               I    L +   +  LP      E  G  G  I              +   ++    
Sbjct: 656 RPLRIGERQLTIYHWI--LPFRDSLGEVQGIIGGWI--DISERRQLIEELQAAKEQADAA 711

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
              K    +    +            L +  K +   E      +V  +    LL     
Sbjct: 712 SRAKSTFLATMSHEIRTPMNAVI-GMLELALKRADHGELDRSAIEVAYSSANDLLDLIGD 770

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
            L +     +  L    ++     L  +    F+ L+ +   SL    D  
Sbjct: 771 IL-DIARIESGRLALNPERANLRQLVESVVRVFDGLARQKDLSLVLALDSR 820


>gi|212710083|ref|ZP_03318211.1| hypothetical protein PROVALCAL_01136 [Providencia alcalifaciens DSM
           30120]
 gi|212687290|gb|EEB46818.1| hypothetical protein PROVALCAL_01136 [Providencia alcalifaciens DSM
           30120]
          Length = 1042

 Score =  314 bits (804), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 100/364 (27%), Positives = 171/364 (46%), Gaps = 23/364 (6%)

Query: 449 IEVMQLCSILEATSDGIAIINREGI-ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
                  +++  T  G+ +I+ E   +   N         P  D            +   
Sbjct: 354 ESEAFNQTLIATTPIGLCVIDTETQDLRFANELAKYWLNIPNTD----------SPHDSM 403

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQE 567
             N  L+ ++S       EK+T      E +L +                  DI+   + 
Sbjct: 404 EYNELLSRVISEQ-----EKVTTVLKSGEHVLYIVSTATHYQQRPVILCAFTDITIQAET 458

Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
           + +L+HAK++AE+ +  KS+FLA +SHEIRTPL  IIG  E+++N    P    +   + 
Sbjct: 459 EKQLNHAKRLAEEANQAKSNFLATMSHEIRTPLYGIIGTLELLENTALSP----KQKHFI 514

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
           + +  +  L++ ++ D+LDISKIE+ ++++      L + +   + L Q  A +K++L+ 
Sbjct: 515 DRMSTTSQLLMHLIGDILDISKIEANQIHIQHISFDLLDLIQHTVQLYQGLAQQKKLLLF 574

Query: 688 TSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
                NI  +   D   ++QI  N+LSNAI FT +G ++ +   + +N  +IL V DTGV
Sbjct: 575 AIIDPNIYAVRIGDAARLQQIFGNLLSNAIKFTHNG-KVTVELRNGTNNNIILFVNDTGV 633

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G++  + EK  +PF Q   S Q    GTGLGL +   +V    G+  + S    G+  +I
Sbjct: 634 GISQEQQEKLFEPFYQAH-SGQHTYGGTGLGLFICAELVKLMGGEISVTSNLTVGSSFQI 692

Query: 807 IFPL 810
             PL
Sbjct: 693 TLPL 696


>gi|212218529|ref|YP_002305316.1| two component system histidine kinase [Coxiella burnetii CbuK_Q154]
 gi|212012791|gb|ACJ20171.1| two component system histidine kinase [Coxiella burnetii CbuK_Q154]
          Length = 683

 Score =  314 bits (804), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 101/516 (19%), Positives = 210/516 (40%), Gaps = 29/516 (5%)

Query: 321 LTPETVDKCPIPFFVYSHG--NLFYANPSFLLLTKYKSVDDIEIAG-GLSTLLDAPKLSD 377
           L     +     F++ S       Y +P+F  +               ++ ++   +   
Sbjct: 33  LFLNLAETSQDIFWIRSVDFYTHVYVSPAFENIFGISRQTLYANPNKWMNAVIIEDRDRL 92

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
            + I    +            R+     +    +           +  + +   G+  + 
Sbjct: 93  RHLIMEWQVKNKKGAAYTVDYRI----IDAYGEMHWINETSYPVYEDDQCLGYAGVVKDV 148

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREG-IILSTNRAVSKLFGYPVEDILR-- 494
              ++  ++ +  V      +E  S    +    G   +  +    K++G   E + +  
Sbjct: 149 SSEKLRVKEFDNAVHYFRHFVERVSGVFWVKGSRGDKQIYISPTYEKIWGVSCESLYQNP 208

Query: 495 KPFTVFLEQNTP---SVMNHYLTEILSLDLR-QTLEKITLGSTKEEKLLSLRIIIKKLPF 550
           K +  ++         V  ++              E        + ++  ++     +  
Sbjct: 209 KSWIDYVLPEDISNGKVNVNFYETAADQRTPDSKYEFRFRIRRPDGEIRWIKDTYFPIME 268

Query: 551 SS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
           +     ++    D++     + +   AK+ AE+ +  KSDFLA +SHE+RTPL AI+G S
Sbjct: 269 NGKLVGFAGIAEDVTNDALREKEPWEAKEFAEQANRTKSDFLAMMSHELRTPLNAILGMS 328

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
           +++K        +       + I ++G  +L ++NDLLD +K+E+GK++   E + L E 
Sbjct: 329 QILKTHNL----SDEQQGQIDVISQAGQNLLALLNDLLDFAKLEAGKLSFTEETMDLHEL 384

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII 726
           V +    + L A++K I ++  +  NIP +++ D + ++Q+ +N+LSNA+ FT  G  + 
Sbjct: 385 VMKIKGDMLLLAHKKGIQLKFDYPENIPSKVMGDAKRIRQVLVNLLSNALKFTEKG-YVQ 443

Query: 727 ISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
           ++      +     +   V+DTG+GM   +L      F QI +  Q + +G GLGL + K
Sbjct: 444 LTANCLKKDHKKMTLCFTVKDTGIGMEKTKLSSIFNRFQQINSVYQRKYDGVGLGLSIVK 503

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFP--LYDTSHP 816
            +++   G   + S P  G+    I P  L   S+P
Sbjct: 504 ELLEKMGGTISVTSEPGVGSEFTCIIPFRLQADSNP 539


>gi|325109506|ref|YP_004270574.1| PAS/PAC sensor hybrid histidine kinase [Planctomyces brasiliensis
           DSM 5305]
 gi|324969774|gb|ADY60552.1| PAS/PAC sensor hybrid histidine kinase [Planctomyces brasiliensis
           DSM 5305]
          Length = 566

 Score =  314 bits (804), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 97/414 (23%), Positives = 178/414 (42%), Gaps = 16/414 (3%)

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
            +R+    +            E           +  R  +        +  S+ E   +G
Sbjct: 10  KDRDKIEGLESGADGYLTHPIEPPVLIATVHAFLRARQAESARRESETRFKSVFENAYNG 69

Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
           IAI++     +  N AVS+L      +I+ +P   F+       +  YL ++ +    + 
Sbjct: 70  IAILDAAHCFMEVNPAVSRLLQRQDTEIVGRPLLEFVAPEYREPVTAYLKQLENAGAWRG 129

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA-------KKI 577
                     +   + L   +        +   + D+SE  + + +           +  
Sbjct: 130 N---FPLMAADGHAIYLEWNMSSHIPGQ-WLTIVSDVSEQIRYQEERELLLESERTARSE 185

Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
           +E+ +  K +FLA +SHE+RTPL+ I+G+S ++     G L +    E  + I+ +GN++
Sbjct: 186 SERANQLKDEFLATLSHELRTPLSNIVGWSRLL---NMGGLDDESIREGLDTIESNGNIL 242

Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697
             ++ DLLD+++I SGK+ L    ++  E +  AI  V+  A+ K++ + T+   N   I
Sbjct: 243 SQMITDLLDVARIASGKIRLDTVSLNPVETLEAAIRAVKPSADAKQLGVVTTVDRNAGLI 302

Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757
             D   ++Q+  N+L+NAI FTP+ GQI +         + + + DTG GMT   L    
Sbjct: 303 EGDASRLQQVFWNLLTNAIKFTPAEGQIDVVMQKV-GSTIQISIADTGKGMTPETLNIIF 361

Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFPL 810
           + F Q   +      G GLGL + K +VD + G     S    +G    + FP+
Sbjct: 362 ERFRQADGTTTREHGGLGLGLAITKQLVDLHGGTISAESAGLGQGAKFILSFPI 415



 Score = 47.3 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 28/71 (39%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +DA     E++  + + +     +++G  L +     + +P       L+    W G   
Sbjct: 73  LDAAHCFMEVNPAVSRLLQRQDTEIVGRPLLEFVAPEYREPVTAYLKQLENAGAWRGNFP 132

Query: 149 LWPIEGTNLYV 159
           L   +G  +Y+
Sbjct: 133 LMAADGHAIYL 143


>gi|301063084|ref|ZP_07203645.1| PAS domain S-box protein [delta proteobacterium NaphS2]
 gi|300442804|gb|EFK07008.1| PAS domain S-box protein [delta proteobacterium NaphS2]
          Length = 486

 Score =  314 bits (804), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 93/500 (18%), Positives = 197/500 (39%), Gaps = 29/500 (5%)

Query: 315 FDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
            +  E+      +       V    G +   N  FL   +      I         +   
Sbjct: 10  IETSESFLETIFNGISEEIMVVDSEGVIHDVNRVFLNERRLSKEAVIGKKCFEIRSISGS 69

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
                ++  P+    +    +  + R  +     E+   +  I +   N+         I
Sbjct: 70  HCQLRDSDCPLQKAVNTGERVEVTHRRCS---QDESFKTLQRIMYPVTNRRTGEKYFVEI 126

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
             +  + R    ++     ++ +IL+  +D I  IN    I+  N A  ++FGY  E++L
Sbjct: 127 SQDVTEYRNLLFRLRSSEKRIRAILDTATDAIISINENHEIVLFNNAAERIFGYKREEVL 186

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRI--IIKKLP 549
            +   + +     +    ++   L     + +   +      K  +   + +    +++ 
Sbjct: 187 NQNLNLLIPPKYGN-HADFVKNFLKTKEPKFIGKTQTLTACRKNGEEFPIELGLSFQEMD 245

Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
            +  ++  + DI+E K+ +  L  + ++A          +A V HEI++PL  I GFS  
Sbjct: 246 DAYTFTAIIRDITEQKKLEENLLRSGRLA-----AVGTTVAHVVHEIKSPLMIIGGFSHQ 300

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           I+N     L +   I+  + I    + +  +V  L D +K+     NL   P  ++  + 
Sbjct: 301 IRN----SLEDENAIKKLDMILDEVSRLERLVASLGDFTKV----YNLVTRPADINSVIQ 352

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
           + + +       ++  ++   A+N+  I  D   +KQ+ +NI++N I      G I I T
Sbjct: 353 DVLKIFSGIYPPEKYTMKAELASNLTEIQCDPDKLKQVVINIITNGIEAMEESGSISIKT 412

Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
                  V +++ D G+G+++ ++    +PF         R  G+GLGL ++  +V+A+ 
Sbjct: 413 KGCEGG-VKIQISDEGIGISDEDILHIFEPFYTT------RDRGSGLGLAISYKIVEAHG 465

Query: 790 GKFYIFSTPAKGTLIEIIFP 809
           G+ +  S   KGT   +  P
Sbjct: 466 GELWAESVKGKGTTFFMRLP 485



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 56/169 (33%), Gaps = 12/169 (7%)

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
           ++ R     +E     L +I    S+ I +++ EG+I   NR          E ++ K  
Sbjct: 1   MEKRYQSDDIETSESFLETIFNGISEEIMVVDSEGVIHDVNRVFLNERRLSKEAVIGKKC 60

Query: 498 TVFL----EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFS 551
                           +  L + ++   R  +        +  K L   +     +    
Sbjct: 61  FEIRSISGSHCQLRDSDCPLQKAVNTGERVEVTHRRCSQDESFKTLQRIMYPVTNRRTGE 120

Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS----HEI 596
             +     D++E++    +L  ++K         +D  A +S    HEI
Sbjct: 121 KYFVEISQDVTEYRNLLFRLRSSEKRIRAILDTATD--AIISINENHEI 167



 Score = 39.2 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 16/177 (9%), Positives = 47/177 (26%), Gaps = 10/177 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNT-WYGKT 147
           I+ +  +   +    +  G    +++   L  +    + +  + + + LK +   + GKT
Sbjct: 161 INENHEIVLFNNAAERIFGYKREEVLNQNLNLLIPPKYGNHADFVKNFLKTKEPKFIGKT 220

Query: 148 TLW---PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
                    G    + + L+   +      F+      I+              R  +  
Sbjct: 221 QTLTACRKNGEEFPIELGLSFQEM-DDAYTFT-----AIIRDITEQKKLEENLLRSGRLA 274

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
           +    +      ++     I        +           +    +   L+     L
Sbjct: 275 AVGTTVAHVVHEIKSPLMIIGGFSHQIRNSLEDENAIKKLDMILDEVSRLERLVASL 331


>gi|295694964|ref|YP_003588202.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Bacillus tusciae DSM 2912]
 gi|295410566|gb|ADG05058.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Bacillus tusciae DSM 2912]
          Length = 752

 Score =  314 bits (804), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 84/414 (20%), Positives = 171/414 (41%), Gaps = 37/414 (8%)

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC-------SILEATSDG 464
            +       +N       +  +     + +   R +E  V +L         IL++ ++G
Sbjct: 330 IVDATSTALSNAMRFEQLEAIVRQRTTELKEKNRMLENLVEELRKLSTRTTLILDSVTEG 389

Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI-----LSL 519
           I  ++  G I   N A ++L G    +I+  P                L        +  
Sbjct: 390 IYELDENGRITFCNPAAARLVGREPGEIIGLPQHDVFWHGKSEDKGCTLAACPILSPIQT 449

Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKK 576
                         K+     +  +   +          +   D++E K+ +  +  ++K
Sbjct: 450 GQPIQATDELF-RRKDGSTFPVDYVSTPMRDGGRIQGAVVVFKDVTERKRSEELMIKSEK 508

Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
           ++           A V+HEIR PLTA+ GF +++++            EY N +    + 
Sbjct: 509 LSVV-----GQLAAGVAHEIRNPLTALKGFVQLLQSNVHTKD------EYFNIMLSELDR 557

Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696
           +  I+N+LL ++K     +++ F+   L   +   ++L++  A    + I T     +P 
Sbjct: 558 IELIINELLILAKP----VDVQFQFHDLKVLIETVVALLRTQAILSNVQIATDCDPALPA 613

Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKA 756
           +L D   +KQ+ +N+L NAI   P GGQI++      +  +++RV D G+G+    L + 
Sbjct: 614 VLCDENRLKQVLVNLLKNAIEAMPRGGQIVVQARQEDDRTILIRVIDEGMGIPEDSLPRL 673

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            +PF         + +G GLGL ++  +++++ G+ +  S    GT +EI+ P+
Sbjct: 674 GEPFFTT------KEKGVGLGLTMSYQIIESHGGQMHFESEVGAGTTVEILLPI 721



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/125 (12%), Positives = 36/125 (28%), Gaps = 12/125 (9%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDL-----LKR 139
            + +D +G +   +    + +G    ++IG+   DV       D    +        ++ 
Sbjct: 390 IYELDENGRITFCNPAAARLVGREPGEIIGLPQHDVFWHGKSEDKGCTLAACPILSPIQT 449

Query: 140 QNTW-YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
                         +G+    P+D  + P+        G     +            L  
Sbjct: 450 GQPIQATDELFRRKDGSTF--PVDYVSTPMRDG-GRIQGA--VVVFKDVTERKRSEELMI 504

Query: 199 RLDKK 203
           + +K 
Sbjct: 505 KSEKL 509


>gi|256005028|ref|ZP_05429999.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           thermocellum DSM 2360]
 gi|255990996|gb|EEU01107.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           thermocellum DSM 2360]
          Length = 424

 Score =  314 bits (804), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 81/392 (20%), Positives = 186/392 (47%), Gaps = 35/392 (8%)

Query: 426 ENMPQNGIEPEDVDTRINK--RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           + + Q  +    + +++ +    +  + ++L SI+E+ ++GI  ++    ++  N A   
Sbjct: 57  DELGQLAVHFNKMASKLERTISDLNTKKIELESIVESITNGIVAVDGNNKVILINPAAFT 116

Query: 484 LFGYPVE-DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
           +F    + +IL       ++    S +N  L + +  +    LE        + ++L + 
Sbjct: 117 VFNLDADAEILGDDIENHIK---NSQINSLLKDAIQKNKP--LEAEVAI---DGRVLLVN 168

Query: 543 IIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
               +   S        + + DI++ ++ +                +++F++ V+HE++T
Sbjct: 169 ASPIRPKDSDIDNSGGIVFIQDITKVRKLE--------------QIRTEFVSNVTHELKT 214

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           P+T+I GF E +KN   G + NP   E +   ID     + +++ND+L +S+IE+   + 
Sbjct: 215 PITSIRGFIETLKN---GAMNNPVVAERFLEIIDIEAERLHELINDILLLSEIETKLKDT 271

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
           + E   L   V +   ++Q  A EK+I +  +  + +  + A++  +KQ+ +N++ N I 
Sbjct: 272 NLEIFDLKSMVDDVFKVMQNIAKEKKISLNNNVRDEVL-MKANINRMKQLIMNLVDNGIK 330

Query: 718 FTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
           +    G + +   +  + +V++ V+DTG+G+ +  + +  + F ++   +     GTGLG
Sbjct: 331 YNVQNGSVSVD-GYREDGKVVISVKDTGIGIPSAHIPRIFERFYRVDKGRSRGMGGTGLG 389

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           L + K +V+   G+  + S   +GT   +  P
Sbjct: 390 LSIVKHIVNLYNGEIKVNSVVGEGTEFIVKIP 421


>gi|126737354|ref|ZP_01753089.1| cytoplasmic sensor hybrid histidine kinase [Roseobacter sp.
           SK209-2-6]
 gi|126721939|gb|EBA18642.1| cytoplasmic sensor hybrid histidine kinase [Roseobacter sp.
           SK209-2-6]
          Length = 732

 Score =  314 bits (804), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 94/393 (23%), Positives = 172/393 (43%), Gaps = 22/393 (5%)

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILE----ATSDGIAIINREGIILSTNRAVSKLFG- 486
           G+          +R    E+ +L  + E    A  DG  + +    +   N A    FG 
Sbjct: 29  GMLYRRFHAARERRSALYELERLRIMFEDAIAAIDDGFVLYDEADRMYICNDAFRNQFGS 88

Query: 487 --------YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
                      E+ + K     +          ++  ++            +  T + + 
Sbjct: 89  SQSILSEGLTYEEQIEKLARSGIVPGIEGKEEDFVRGLMEKR-HSEFGLTKVFQTHDGRW 147

Query: 539 LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
           +  R    K   +        DI+E K+ + +L  A++ AE  +  K+ FLA +SHEIRT
Sbjct: 148 IRQRD---KKTSAGNVVGLRTDITELKERELELEEARQQAEAAAEAKTAFLANMSHEIRT 204

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
           P+  +IG +E+++        N         +  S N +L +VND+LD SK ++GKM ++
Sbjct: 205 PMNGVIGMAELLEETDL----NEEQRMCTKTVVESSNALLSLVNDVLDFSKADAGKMTVN 260

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIH 717
             P  L E +    +L+   A+EK I I     ++ P   L D   ++Q+ +N++ NAI 
Sbjct: 261 KAPFDLVECLYSTATLLAPNASEKSIEICLDIPDDQPCWCLGDQGRLRQVLINLVGNAIK 320

Query: 718 FTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
           FT +G  +I    +T ++ +   V+DTG+G+   +++     F Q+ +    R +G GLG
Sbjct: 321 FTETGFVLIKLEVNTESDLMRFLVQDTGIGIPASKVDTIFDVFEQVNSETTRRYDGAGLG 380

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           L ++K +++   G   + S   +G+      PL
Sbjct: 381 LAISKKLIELMGGTLGVTSKLGEGSEFTFALPL 413


>gi|83647357|ref|YP_435792.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83635400|gb|ABC31367.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 935

 Score =  314 bits (804), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 95/513 (18%), Positives = 195/513 (38%), Gaps = 35/513 (6%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
           P  ++  DE   +    V    I   +             + +      +          
Sbjct: 416 PPQTSNSDEARQVMGFIVGSVQIGNLIDRLSQDINLELFHIEIFDITDPEQ------PEA 469

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT------IQWNRENSLAMTFIPFEKAN 422
           L  + + + +N ++ +              R+        I+ N   +  +  I     +
Sbjct: 470 LFISRQSAPDNPLEDMFTQTLQMEISGRVWRISITPTRLFIKQNASVTPWIALILAVLFS 529

Query: 423 QFPENMPQNGIEPEDVDTRI---NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
                +            +      +++E    +   +       I  +++       N 
Sbjct: 530 SLLTAVLLLETAHTVKIEKAVIDQSQRLEKAETRYQELFTGLKQVIFQVDKAYQWQVLNP 589

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
           A S L G   E+ + +    ++  +    +   L +I  L+      ++ L + + E+  
Sbjct: 590 AWSGLTGETPENAIGREMFHYIHPDDCDKLREALQKISRLEESSLFLELRLNALQLERAP 649

Query: 540 SLRIIIKKLPFS----SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
            + I +++   +      YS  + DISE K+                  K++F++ VSHE
Sbjct: 650 WVEIHLQRSKDATGKMDGYSGFIADISERKRLDI--------------LKNEFISTVSHE 695

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           +RTPLTAI G   ++ + R G L   +  +  +    +   +L ++NDLLDI KIESG +
Sbjct: 696 LRTPLTAINGSLALLDSGRLG-LLPDQAKQMLHIAYSNCERLLRLINDLLDIQKIESGGL 754

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715
              FE   L + + EA++  +  A +  + +  +   +   + AD   ++Q+  N++SNA
Sbjct: 755 EFSFERADLRDLIEEALNANRQLAEKASVTLVFATPESPALVKADRDRLRQVLDNLISNA 814

Query: 716 IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           I F+P+   + ++    ++    + V+D G G+      K  + F Q  +S      GTG
Sbjct: 815 IKFSPADEAVTLTLNAHAH-YWEVAVQDQGPGVPPEFRNKIFQKFAQADSSDTRLKGGTG 873

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           LGL +++ +V  + G+    S    G       
Sbjct: 874 LGLSISREIVQRHHGQIGYHSEANCGATFYFRL 906



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/248 (9%), Positives = 75/248 (30%), Gaps = 16/248 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + +D     + ++       G      IG    ++   +H D  + + + L++ +    
Sbjct: 575 IFQVDKAYQWQVLNPAWSGLTGETPENAIGR---EMFHYIHPDDCDKLREALQKISRLEE 631

Query: 146 KTTLWPIEGTNLYV----PIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
            +    +    L +     +++          +  G+ GF    +  +    R    + +
Sbjct: 632 SSLFLELRLNALQLERAPWVEIHLQRSKDATGKMDGYSGF----IADISERKRLDILKNE 687

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
              +  HE++   +++      + S +       + ++   +        + L      L
Sbjct: 688 FISTVSHELRTPLTAINGSLALLDSGR----LGLLPDQAKQMLHIAYSNCERLLRLINDL 743

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
           L  ++      E        +   ++     +  ++++   L     P   A      + 
Sbjct: 744 LDIQKIESGGLEFSFERADLRDLIEEALNANRQLAEKASVTLVFAT-PESPALVKADRDR 802

Query: 322 TPETVDKC 329
             + +D  
Sbjct: 803 LRQVLDNL 810


>gi|290889604|ref|ZP_06552694.1| hypothetical protein AWRIB429_0084 [Oenococcus oeni AWRIB429]
 gi|290480802|gb|EFD89436.1| hypothetical protein AWRIB429_0084 [Oenococcus oeni AWRIB429]
          Length = 619

 Score =  314 bits (804), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 87/408 (21%), Positives = 171/408 (41%), Gaps = 37/408 (9%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
            +  ++      Q     + + +        +E  +L S+L   +DG+  I R+G I   
Sbjct: 231 IKSKDEIGILATQINDLSDTIASETATSN--MESDRLNSLLSNMTDGVLAITRDGTITVI 288

Query: 478 NRAVSKLFGYPVED-ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
           N+A   L   P  D  + K  +  L+     +    L        +     +      + 
Sbjct: 289 NQAALDLLHIPRTDKAVGKNISDLLKLVDKKITLRKL-------FQSIRGFVVEPDGPDG 341

Query: 537 KLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
             L++   + +      S   + + D++   + +             +  K+ F++ VSH
Sbjct: 342 VTLNVVASLVRRQSGFISGAVVVLRDVTRQLKLE-------------NDQKN-FVSNVSH 387

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           E+RTPLT++  + E ++          R  E+          ++ ++NDLL++S+++ G+
Sbjct: 388 ELRTPLTSVNSYIETLQEGALTQKKIAR--EFLGVAHDETQRMIHMINDLLELSRMDQGR 445

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKR--------ILIRTSFANNIPRILADLRSVKQ 706
             +  E V+  + ++  +    +   +           +IR         +  D     Q
Sbjct: 446 TKMDTEAVNFTKFINYVLDRFDVMFKQGHSMHSDNHYKIIRNYDQKKSCYVEIDSDKFMQ 505

Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
           +  N+++NAI+++P GG I I    T +  +IL ++D G+G+   +LE     F ++  S
Sbjct: 506 VVDNVINNAINYSPDGGNIEIGINETDD-SIILSIKDHGLGIPKKDLENVFTRFYRVDKS 564

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           +  +  GTGLGL ++K +V+A  GK  + ST   GT   I  P  DTS
Sbjct: 565 RARKQGGTGLGLAISKEVVEALHGKIRVESTVNVGTTFFISLPKVDTS 612


>gi|253701693|ref|YP_003022882.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           M21]
 gi|251776543|gb|ACT19124.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           M21]
          Length = 659

 Score =  314 bits (804), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 85/552 (15%), Positives = 187/552 (33%), Gaps = 51/552 (9%)

Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFL 349
           TL   +     +L   +           E    + +D        V ++G   Y N ++ 
Sbjct: 122 TLGGRAYLVETFLDISDRKKAEQALQRSEERCRDILDNANDLIQSVDANGAFIYVNRAWK 181

Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
               Y   +   +     T+ D    S       +     +   +        I  +   
Sbjct: 182 QTMGYSDEEVSRL-----TIFDVIAPSSKEHCSLLFRRIMNGEKVPV-VETEFITKDGS- 234

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469
            + +        +   + +   GI  +  + +  + ++     +   + E     I +  
Sbjct: 235 -VVVLEGSINCKHLGGQLLGTRGIFRDITERKRMQAELMQSEDRYRKLFENAPVAIVV-Q 292

Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
            EG+ +  N    ++ G    D++       +  +    +   +  +        L +  
Sbjct: 293 CEGVYVCANNEACRMLG---RDLVGVDVLSTVHPDYRDTVMERILRVSETGEPSPLLEQK 349

Query: 530 LGSTKEEKLLSLRIIIKKL--PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS- 586
           +    +   + + +    +           + DI+E +  + +        EKE   K+ 
Sbjct: 350 MLRL-DGSSIDVEVTGSSIVFKGKKATQAVIRDITERRLAEEQRREWNLRLEKEVEAKTR 408

Query: 587 -------------------DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE-- 625
                              + ++  SHE+  PL  I+G  ++++         P  +E  
Sbjct: 409 HLKEAQAKLIQSEKMATLGEVISGASHELNNPLAGILGAIQMLRKSALAQPIEPELLEGI 468

Query: 626 -YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
                I+ +     +IV DL+  S     + + +F  + +++ + + + ++     +  I
Sbjct: 469 DVLESIESAAIRCQNIVADLIRFS----TQAHCNFSEIDINQVLRDTLEIMAAPFADLGI 524

Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN----EEVILR 740
            +       +P I  D   + ++ +++L NA +  P GG I + T    N     +V + 
Sbjct: 525 QVELDSDPAVPLIEGDFVKLLEVYVSLLRNAQNALPDGGTIYLGTKVVKNYGEPPQVAVT 584

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           +RDTG G+    L K   PF          G G GLGL ++  +V  + G   + ST  K
Sbjct: 585 IRDTGCGIPPQNLSKIFDPFFTTKP----VGRGPGLGLTVSYGIVKRHGGDIDVRSTVGK 640

Query: 801 GTLIEIIFPLYD 812
           GT + +  PL  
Sbjct: 641 GTEVTVTVPLRQ 652



 Score =  107 bits (268), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 39/278 (14%), Positives = 85/278 (30%), Gaps = 20/278 (7%)

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN--LFYANPSFLLLTKYKSVDDIEIAGG 365
            P+L     E +      +    +   V    +  +  ANP  + +      + I     
Sbjct: 18  APALEGNLAENQQYLATILATAQVGILVIDSESHVIVEANPKAVEVIGVPREEIIGSVCH 77

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
               +   +L                 CI    R   I    E    +  +         
Sbjct: 78  --RFICVAELGQCPVTD-------LGQCIHCGEREL-ITAKGEQVTVVKTVASIT---LG 124

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
                     +  D +  ++ ++    +   IL+  +D I  ++  G  +  NRA  +  
Sbjct: 125 GRAYLVETFLDISDRKKAEQALQRSEERCRDILDNANDLIQSVDANGAFIYVNRAWKQTM 184

Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
           GY  E++ R      +  ++    +     I++ +    +E   +  TK+  ++ L   I
Sbjct: 185 GYSDEEVSRLTIFDVIAPSSKEHCSLLFRRIMNGEKVPVVETEFI--TKDGSVVVLEGSI 242

Query: 546 KKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEK 580
                            DI+E K+ + +L  ++    K
Sbjct: 243 NCKHLGGQLLGTRGIFRDITERKRMQAELMQSEDRYRK 280



 Score = 73.1 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/387 (10%), Positives = 98/387 (25%), Gaps = 36/387 (9%)

Query: 89  IDAH-GYLKEISEELPKTIGNYAFKMIGMRLCDVS--DILHIDPNNHIGDLLKRQNTWYG 145
           ID+    + E + +  + IG    ++IG           L   P   +G  +       G
Sbjct: 46  IDSESHVIVEANPKAVEVIGVPREEIIGSVCHRFICVAELGQCPVTDLGQCIHC-----G 100

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +  L   +G  + V   +A++ +  R      F                   +R +++  
Sbjct: 101 ERELITAKGEQVTVVKTVASITLGGRAYLVETFL------DISDRKKAEQALQRSEERCR 154

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
            + +                         +     S          DV+        +  
Sbjct: 155 DILDNANDLIQSVDANGAFIYVNRAW---KQTMGYSDEEVSRLTIFDVIAPSSKEHCSLL 211

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQN----------NSKESFEYLSHRNHPSLSAYF 315
              +   E    +     TK      L+                  +        + A  
Sbjct: 212 FRRIMNGEKVPVVETEFITKDGSVVVLEGSINCKHLGGQLLGTRGIFRDITERKRMQAEL 271

Query: 316 DEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYK--SVDDIEIAG------GLS 367
            + E+   +  +  P+   V   G    AN     +       VD +           + 
Sbjct: 272 MQSEDRYRKLFENAPVAIVVQCEGVYVCANNEACRMLGRDLVGVDVLSTVHPDYRDTVME 331

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
            +L   +  + + +    + R D + I       +I +  + +         +     E 
Sbjct: 332 RILRVSETGEPSPLLEQKMLRLDGSSIDVEVTGSSIVFKGKKATQAVIRDITERR-LAEE 390

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQL 454
             +      + +     R ++    +L
Sbjct: 391 QRREWNLRLEKEVEAKTRHLKEAQAKL 417


>gi|149202987|ref|ZP_01879958.1| sensor histidine kinase/response regulator [Roseovarius sp. TM1035]
 gi|149143533|gb|EDM31569.1| sensor histidine kinase/response regulator [Roseovarius sp. TM1035]
          Length = 720

 Score =  314 bits (804), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 100/450 (22%), Positives = 193/450 (42%), Gaps = 26/450 (5%)

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
           A +      ++R      A L           A+         +      ++  +    D
Sbjct: 8   ADERRARLAAERLLEQKQAELQAANRKLGK-HALALSHEIHETRAEVQTVRDENQRVKSD 66

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF--------GYPVED 491
                +K+EI   +L   +E   DG A  + +  +++ N A   +F        G    +
Sbjct: 67  LNDAYQKVEIAERRLWHSIETIQDGFAFFDADSRMIAANNAYLAVFDGLEAVKPGVSYIE 126

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
           IL+      +          +  ++L        E   +      + + L   I +    
Sbjct: 127 ILQFITEEGIVNIGALKPQEWREKMLDRWQSTQPEPEVI-RLWNGQYIKL---IDQRGHG 182

Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
                   +I++  + + +L  A++ AE  +  KS FLA +SHEIRTP+  ++G +E++ 
Sbjct: 183 GDVVSLALNITDTIRYEKELKEARRRAEAANRAKSSFLANMSHEIRTPMNGVVGMAELLM 242

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
                         + + I  SG  +L I+ND+LD SKIE+ K+ LH EP  L+  + E 
Sbjct: 243 ETEL----TEEQRLFTSTIKNSGEALLVIINDVLDYSKIEAEKLILHAEPFDLERCIHEL 298

Query: 672 ISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
           ++L+Q+ A +K + +   +   +P + + D   ++QI  N+L NA+ FT   G +++  T
Sbjct: 299 VTLMQVNARDKGLDVLVDYDLFLPTQFVGDPGRIRQIMTNLLGNAVKFT-ENGHVLVRVT 357

Query: 731 -----HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
                      + + V DTG+G+   +++     F Q+ + +  + EGTGLGL +++ ++
Sbjct: 358 GVYSDTEGRASIHVTVEDTGIGIPPDKIDHIFGEFNQVDDERNRKFEGTGLGLAISQKLI 417

Query: 786 DANMGKFYIFSTPAKGTL--IEIIFPLYDT 813
               GK ++ S P  G++    I  P+ + 
Sbjct: 418 RMMGGKIWVESEPGNGSIFGFSISLPVAEV 447


>gi|158523275|ref|YP_001531145.1| PAS/PAC sensor hybrid histidine kinase [Desulfococcus oleovorans
           Hxd3]
 gi|158512101|gb|ABW69068.1| PAS/PAC sensor hybrid histidine kinase [Desulfococcus oleovorans
           Hxd3]
          Length = 1106

 Score =  314 bits (804), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 99/734 (13%), Positives = 217/734 (29%), Gaps = 48/734 (6%)

Query: 103 PKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPID 162
            +        ++ + L        I       +     +          + G+ +   I 
Sbjct: 256 TRAKDYRNADVVAVTLPVPGSPWFIVSKMDEAEAFAEWHFRSALILALILVGSGI---IT 312

Query: 163 LAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKY 222
           +     + R R+      F      R++ +      R       + +     + +     
Sbjct: 313 VLGAAFWLRERKKQYQLLFQSETDRRMEAERYRTTLRSIGDAVIVTDAAGRVTLLNPVAE 372

Query: 223 DIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQ 282
            +   + P    +    V  +         V       L       L         +  +
Sbjct: 373 SLTGWKEPEAKGQRVEDVFRIANEE-TGAIVESPVARVLREGRVVGLANHTILIARDGAR 431

Query: 283 YTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL----TPETVDKCPIP-FFVYS 337
                    +++++ +    +      +      +             +        V  
Sbjct: 432 RPIADSGAPVRDDAGDIISVVLVFRDQTEEQAAQKALRDSEQKYRRLYESMTDAFVAVDL 491

Query: 338 HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397
            G +   NP+F  +  Y   +  E+      L      S   A+    + +       + 
Sbjct: 492 AGRVQEYNPAFQSMVGYTDRELHELTYQ--DLTPEKWHSLETAVVEDQILKR----GYSD 545

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
                 +        +    F   ++    +    I  +    +  +  +  +   L SI
Sbjct: 546 VYEKEYRRVDGTVFPVELRTFLIRDEAASPIGMWAIVRDITGRKQAEAALLEKTGLLQSI 605

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
            +   D ++I + +G +   N A  +  GY  + ++       +  +   ++   +T+  
Sbjct: 606 TDNIFDMVSIADVQGQLRFINAAHRQTLGYEPDALIGTDVMSLVHPDDRDLVATAMTDGF 665

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSH 573
               R  +         +   + +  +   L            +  DIS  KQ + +   
Sbjct: 666 LSQSRHRM-VEYRCKRADGGYVWVETVGDVLRDLDGNPKDLLFSSRDISVRKQAEAEKER 724

Query: 574 AKKIAEKESSHKS--DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
                 +    +S       V+H+    L  I+G +E+  +Q      +    E    I 
Sbjct: 725 LSAQLMQAQKMESVGRLAGGVAHDFNNMLNVILGHAELALDQVG---PDDPLREDLTEIF 781

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
            +     +I   LL  ++    +  +    V L++ V + + +++     + I +     
Sbjct: 782 DAARRSAEITKQLLAFAR----RQIIVPRTVYLNDTVEKMLKMLRRLI-GEDIDLAWKPG 836

Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS--------------NEEV 737
           + +  + AD   + QI  N+  NA       G+I I T +T+               E V
Sbjct: 837 SGLWPVYADAAQIDQILANLCLNARDAIDGTGRITIETQNTALDEAYCAGHAEFVSGEYV 896

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
           +L V D G GM    ++   +PF    N      EGTGLGL     +V  N G   ++S 
Sbjct: 897 VLSVSDDGRGMDKVTMDNLFEPFFTTKN----VNEGTGLGLATVYGIVRQNNGFINVYSE 952

Query: 798 PAKGTLIEIIFPLY 811
           P  G    I  P +
Sbjct: 953 PGHGATFRIYLPRH 966



 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 53/526 (10%), Positives = 138/526 (26%), Gaps = 64/526 (12%)

Query: 100 EELPKTIGNYAFKMIG---MRLCDVSDILH------IDPNNHIG---------------- 134
            ++       A  ++G    R  D+    H      +DP+  +                 
Sbjct: 80  RDIADYFTAPAEAIVGEIKRRFTDLQASYHYANILLVDPDGRVQVSLNGHDVIDHNGFVG 139

Query: 135 ----DLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSG--------FRGFG 182
                L  R+  +         +G++ ++ +     P+Y+ ++               F 
Sbjct: 140 ALATALFDRRPVFT--ELHTEKDGSSPHISVV---APLYANDQPLGAIILISNARAFLFP 194

Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS 242
           ++    V +               L      H      K  I   ++  P +      + 
Sbjct: 195 LIQSWPVPSRSAETLLVRRDGDHVLFLNDLRHQPNSGLKLRIPLSRADLPAVMAVTGYTG 254

Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302
           +T    +++  +     P+  S    + + ++        + +      L          
Sbjct: 255 VTRAKDYRNADVVAVTLPVPGSPWFIVSKMDEAEAF-AEWHFRSALILALILVGSGIITV 313

Query: 303 LSHRNHPSLSAYF-----------DEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLL 350
           L                                T+        V    G +   NP    
Sbjct: 314 LGAAFWLRERKKQYQLLFQSETDRRMEAERYRTTLRSIGDAVIVTDAAGRVTLLNPVAES 373

Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
           LT +K  +  +          A + +      PV     +   +  +     I  +    
Sbjct: 374 LTGWKEPEA-KGQRVEDVFRIANEETGAIVESPVARVLREGRVVGLANHTILIARDGAR- 431

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470
             +        +   + +    +  +  + +  ++ +     +   + E+ +D    ++ 
Sbjct: 432 RPIADSGAPVRDDAGDIISVVLVFRDQTEEQAAQKALRDSEQKYRRLYESMTDAFVAVDL 491

Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT-EILSLDLRQTLEKIT 529
            G +   N A   + GY   ++    +     +   S+    +  +IL        EK  
Sbjct: 492 AGRVQEYNPAFQSMVGYTDRELHELTYQDLTPEKWHSLETAVVEDQILKRGYSDVYEKE- 550

Query: 530 LGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKL 571
                +  +  + +    +   +         + DI+  KQ +  L
Sbjct: 551 -YRRVDGTVFPVELRTFLIRDEAASPIGMWAIVRDITGRKQAEAAL 595



 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 50/240 (20%), Gaps = 15/240 (6%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ---NTWYGK 146
           D  G L+ I+    +T+G     +IG  +  +      D    +   +       + +  
Sbjct: 617 DVQGQLRFINAAHRQTLGYEPDALIGTDVMSLVHPDDRD---LVATAMTDGFLSQSRHRM 673

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                      YV ++     +   +                V     A  +RL  +   
Sbjct: 674 VEYRCKRADGGYVWVETVGDVLRDLDGNPKDL--LFSSRDISVRKQAEAEKERLSAQLMQ 731

Query: 207 LHEIKKGHSSVEKEKYD-------IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
             +++          +D       I             +                  E  
Sbjct: 732 AQKMESVGRLAGGVAHDFNNMLNVILGHAELALDQVGPDDPLREDLTEIFDAARRSAEIT 791

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
             L +             +N       +    L     +          P  +      +
Sbjct: 792 KQLLAFARRQIIVPRTVYLNDTVEKMLKMLRRLIGEDIDLAWKPGSGLWPVYADAAQIDQ 851


>gi|332711384|ref|ZP_08431316.1| multi-sensor signal transduction histidine kinase [Lyngbya
           majuscula 3L]
 gi|332349933|gb|EGJ29541.1| multi-sensor signal transduction histidine kinase [Lyngbya
           majuscula 3L]
          Length = 669

 Score =  314 bits (804), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 82/413 (19%), Positives = 176/413 (42%), Gaps = 42/413 (10%)

Query: 419 EKANQFPENMPQNGIEPEDVDTRINK--RKMEIEVMQLCSILEATSDGIAIINREGIILS 476
               +  E +       E ++    +   ++  E  +L +++   +DG  +I+    ++ 
Sbjct: 241 PLGVELRELVSSFNDMAERLERYEEQNIEELTAEKAKLETLVSTIADGAVLIDTNFQVML 300

Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
            N    ++FG+  +DI+ K     L       +   L ++ + D +   E+       EE
Sbjct: 301 VNPTARRIFGWEEQDIVGKNVLYHLPDVVTMELTRPLYQMATADKQTETERE--SREGEE 358

Query: 537 KLLSLRIIIKKL-------------PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
             ++L   + +                    ++T+ DI+                 + + 
Sbjct: 359 FRITLTKPVSRTVRILLSKVLNQYRENIKGIAITVQDITR--------------EVELNQ 404

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
            KS+F++ VSHE+RTPL  I  F E + +     L   +  E+ +  +R  + +  +VND
Sbjct: 405 AKSNFISNVSHELRTPLFNIKSFIETLHD-YDEKLSEAKRKEFLDTANRETDRLTRLVND 463

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703
           +LD+S++ES ++    EP  +   + + +   QL A ++ I +      ++P ++     
Sbjct: 464 VLDLSRLESCRI-YQLEPFDIVRPIEQTLRTYQLNARDQTIELAQEIEPDLPPVMGHYDL 522

Query: 704 VKQIALNILSNAIHFTPSGGQIIIST--------THTSNEEVILRVRDTGVGMTNYELEK 755
           + Q+  N++ N++ FT SGG+++I          T    + V + + DTG+G+   + + 
Sbjct: 523 LLQVLANLVGNSLKFTESGGRVVIRAYQLEPELNTKEGKDRVRIEISDTGIGIAPEDQQA 582

Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
               F ++ N +    EGTGLGL + + +++ +  +  + S    GT      
Sbjct: 583 IFDRFFRVEN-RVHTLEGTGLGLSIVRNIIERHHSRVNLVSEVGVGTTFWFDL 634


>gi|160887907|ref|ZP_02068910.1| hypothetical protein BACUNI_00311 [Bacteroides uniformis ATCC 8492]
 gi|317477835|ref|ZP_07937021.1| hsp90-like protein [Bacteroides sp. 4_1_36]
 gi|156862593|gb|EDO56024.1| hypothetical protein BACUNI_00311 [Bacteroides uniformis ATCC 8492]
 gi|316905971|gb|EFV27739.1| hsp90-like protein [Bacteroides sp. 4_1_36]
          Length = 462

 Score =  314 bits (804), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 97/374 (25%), Positives = 173/374 (46%), Gaps = 13/374 (3%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIIN-REG-IILSTNRAVSKLFGYPVEDILRKPFT 498
           ++ +R  E  +  L  IL+       + +  +G      N+   +LF     + + K   
Sbjct: 89  KLRERDRERYLQLLEGILDNLPIAAKVKDVNDGMRYTFWNKKAEELFECSAREAIGKT-D 147

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL-T 557
                   +++     E++   + Q   +       EE+         KL     + + T
Sbjct: 148 FETMPEAAALIRKEDEELVKTGIPQEGIRRFFTKKNEERFTFQNNNFIKLSDGRKWIVYT 207

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
             DI++ K  + KL  AK+ AE+ +  KS FLA +SHEIRTPL AI+GFS ++  +    
Sbjct: 208 AWDITDLKIMERKLRLAKEEAEESNRIKSAFLANMSHEIRTPLNAIVGFSSILATE---- 263

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
           +     +EY + I+R+  L+L ++ND+LD+SKIE+G +   +  V +++ VSE      +
Sbjct: 264 VSEEERVEYLDIIERNNELLLQLINDILDLSKIEAGTLEYVYANVDINKMVSEIEQATSI 323

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737
               K + + T        +  D R + Q+  N +SNA+ FT +G  I I      N  +
Sbjct: 324 RLTNKDVRLVTVTPLPGLLLYTDQRRITQVFNNFISNALKFTAAGS-ITIGYGMPENSYI 382

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
              V DTG G+++   +     F ++ + +    +GTGLGL +++ +V    G+  + S 
Sbjct: 383 RFYVTDTGTGISSENAQGIFNRFVKLDSFK----QGTGLGLAISQNIVKELKGEIGVESQ 438

Query: 798 PAKGTLIEIIFPLY 811
            +KG+      P Y
Sbjct: 439 LSKGSTFWFTLPFY 452


>gi|312868489|ref|ZP_07728689.1| PAS domain S-box protein [Streptococcus parasanguinis F0405]
 gi|311096234|gb|EFQ54478.1| PAS domain S-box protein [Streptococcus parasanguinis F0405]
          Length = 450

 Score =  314 bits (804), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 90/405 (22%), Positives = 169/405 (41%), Gaps = 36/405 (8%)

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDT-RINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
           +         PE         +  +  R+    +E E  +L SIL   +DG+   NR G 
Sbjct: 56  YSEVVDMQGSPELTDMTNSINDLSEVIRLTHENLEQETKRLTSILSYMTDGVLATNRRGQ 115

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
           I+  N   +K      +++L       L       +   +TE+  L +    E       
Sbjct: 116 IIMVNEMAAKQLNVNPDEVLNTSILDLLSLGDDYDLRSLITEVPELTIDSQDE------- 168

Query: 534 KEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
              + LSLR+    +   S +       +HD +E  +E+ +              +  F+
Sbjct: 169 -NGEYLSLRVRFALIRRESGFISGLVAVLHDTTEQDKEERE--------------RRLFV 213

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
           + VSHE+RTPLT++  + E +     G L  P   ++        N ++ +V DLL +S+
Sbjct: 214 SNVSHELRTPLTSVKSYLEAL---DDGALSEPVAPDFVKVSLNETNRMMRMVTDLLSLSR 270

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLV-----QLYANEKRILIRTSFANNIPRILADLRSV 704
           I++    L  E  +    ++  ++       Q   + K+  +   +      +  D   +
Sbjct: 271 IDNETSQLDIELTNFTAFITFILNRFDKIKSQSQEDTKKYELIREYPITPIWVEIDTDKM 330

Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764
            Q+  NIL+NAI ++P GG+I +    T   ++I+ + D G+G+   +L +    F ++ 
Sbjct: 331 TQVIDNILNNAIKYSPDGGKIKVGMRTTD-AQLIISISDEGLGIPKKDLPRIFDRFYRVD 389

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            ++     GTGLGL +AK ++  + G  +  S   KG+   I+ P
Sbjct: 390 KARSRAQGGTGLGLAIAKEIIKQHKGFIWAKSEYGKGSTFTIVLP 434


>gi|300855156|ref|YP_003780140.1| putative sensory transduction histidine kinase [Clostridium
           ljungdahlii DSM 13528]
 gi|300435271|gb|ADK15038.1| predicted sensory transduction histidine kinase [Clostridium
           ljungdahlii DSM 13528]
          Length = 592

 Score =  314 bits (804), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 93/391 (23%), Positives = 168/391 (42%), Gaps = 17/391 (4%)

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490
             +E E  +    +  +     +    +E     + +  ++G +L  NR  S + GY ++
Sbjct: 174 ITLEEEITERTKTEEALRESERKFRYSIEEAPVPVMLYTQDGEVLKINRTWSYITGYTID 233

Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII-IKKLP 549
           DI   P T  L + +              + + + E          ++    +  I KL 
Sbjct: 234 DI---PTTSKLAEISDVFKEDIYKLSNFSEKQNSGEYSVKTKHGNIRIWDFYLACIGKLT 290

Query: 550 FSSC-YSLTMHDISEWKQEKNKLSHAKKIAEKES------SHKSDFLARVSHEIRTPLTA 602
                      D++E +  +    + +K   + S        K+DF A +SHE+RTP+  
Sbjct: 291 DKRNMLIAVAVDVTEKRCMEQLQKNIEKERIRLSEIKKYDRMKTDFFANISHELRTPINL 350

Query: 603 IIGFSE----VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
           I    +     +K        + RY  Y   ++++   +L +VN+L+DI+KI+SG  N+ 
Sbjct: 351 IFSAIQVYKLKLKECICENSCSDRYK-YIKIMEQNCYRLLRLVNNLIDITKIDSGYFNID 409

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718
               ++   V +    +  Y   K + I          I  D   +++I LN+LSNAI F
Sbjct: 410 EVNYNIVSLVEDTTLSIADYIKSKGLSIVFDTDVEEKIIACDPEEIERILLNLLSNAIKF 469

Query: 719 TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
           TP GG I+++     N+ + ++V+DTG G+   +L    + F Q+  S     EG+G+GL
Sbjct: 470 TPRGGNIMVNVE-DGNKSISIKVKDTGKGIPKEKLNSIFERFVQVDKSLARENEGSGIGL 528

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            L KA+V+ + G   + S    G+   I  P
Sbjct: 529 SLVKALVELHGGTISVKSKEGYGSEFIIHIP 559


>gi|254559476|ref|YP_003066571.1| sensor hybrid histidine kinase with multiple PAS/PAC and response
           regulator receiver domains [Methylobacterium extorquens
           DM4]
 gi|254266754|emb|CAX22552.1| putative sensor hybrid histidine kinase with multiple PAS/PAC and
           response regulator receiver domains [Methylobacterium
           extorquens DM4]
          Length = 1065

 Score =  314 bits (804), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 96/771 (12%), Positives = 219/771 (28%), Gaps = 77/771 (9%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI-GDLLKRQNTWYGKT 147
           +D    + +++ E  +       +++G    ++       P   +    ++ +     + 
Sbjct: 188 LDRDFRILQMNAEGFRLEERPPGEVLGSSHWEIYPGSEQMPIGQMYLRAMRERMPLTLEH 247

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIV-HVNRVDNDPRALGKRLDKKFSH 206
                +G   ++ +           R +    G  +         +     +  + +   
Sbjct: 248 RHVWPDGHAAWLEV-----------RAYPHPEGLALFYRDVTERREREKALREAEARLRA 296

Query: 207 LHEIKKG------HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
           L +   G          +               +   +  ++L +  A  D +L   +  
Sbjct: 297 LADNLPGGMVYQIAMDRDGSNRRFLYVSRGFERMTGMSAEAALLDPAAAYDLILPEYREG 356

Query: 261 LLTSEE------SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES---FEYLSHRNHPSL 311
           L  +E       +    +  F   +      +      +                +   +
Sbjct: 357 LAAAEHVAIRDLAPFDFETPFRRSDGEVRWSRIISAPRRQPDGSLVWDGIQFDDTDRKQV 416

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
                E E       +      +     G+  Y N  +   T   +        G     
Sbjct: 417 EERLRESEAKFQAIANSIDQMVWSTGPDGHHDYFNQRWYDFTGVPA----GSTDGKDWED 472

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
                             +         RL   +                 ++       
Sbjct: 473 IVHPGDRARTWTSWSACLATGEPYRIEYRL---RHRTGQYRWTLGRALPMRDEAGRITRW 529

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSIL-------EAT----SDGIAIINREGIILSTNR 479
            G   +  D    +  +      L  ++       +      +D + +   +  I + N 
Sbjct: 530 FGTCTDIQDIVEAREVLARSREDLERLVAERTADRDRMWRLSTDVMLVARYDATIEAVNP 589

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
           A + L G+   +++   F   +  +  +     + ++       TL        K+    
Sbjct: 590 AWTTLLGWDERELIGSAFMDLVHPDDVASTLAEVGKL--SGGVTTLRFENRYRQKDGSYR 647

Query: 540 SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES--SHKSDFLARVSHEIR 597
            L                  DI+  K+    L+  ++   +             ++H+  
Sbjct: 648 WLSWTAVPAED--LIHAVGRDITAEKEAAQALAETEEALRQAQKMEAVGQLTGGIAHDFN 705

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
             LT I+G  ++++  R          +YA     S N    + + LL  ++    +  L
Sbjct: 706 NLLTGIVGSLDMMQ-TRVAQGRTDTIEKYAKAAMSSANRAAALTHRLLAFAR----RQPL 760

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
             +PV+ +  V+    L++    E  + +    A  +   L D   ++   LN+  NA  
Sbjct: 761 DPKPVNANTLVTSLEDLLRRTIGEA-VSLEIVTAGGLWPTLCDPHQLESAVLNLAINARD 819

Query: 718 FTPSGGQIIIST--------------THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
             P GG++ I T                   + + + V DTG GM    + +A  PF   
Sbjct: 820 AMPDGGKLTIETCNTHLDRAYAKLHPGVEPGQYICICVTDTGTGMPPDVVARAFDPFFTT 879

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
                  G+GTGLGL +       + G   I+S   +GT ++I  P +  +
Sbjct: 880 KP----IGQGTGLGLSMIYGFARQSEGHAKIYSEVGQGTSVKIYLPRHRGA 926



 Score =  192 bits (487), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 55/517 (10%), Positives = 135/517 (26%), Gaps = 23/517 (4%)

Query: 82  TVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN 141
            +   W           +E   + +G+     +G R  D+   +  D    I   +  + 
Sbjct: 56  PMFVAW--GPELGFLY-NEPYAEILGDKHPAALGSRFHDIWAEIWDDIAPLIDRAMAGEA 112

Query: 142 TWY-GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
           TW      +    G +       +  P+     E  G   F                +  
Sbjct: 113 TWAENLPLVMNRHGYDERTWFTFSYSPVRDDEGEVGGM--FCACTETTAKVKAEEALRAS 170

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL--RMKNKVSSLTEYYAHKDDVLKTEK 258
           + + S + E       +    + I    +    L  R   +V   + +  +         
Sbjct: 171 EARASGVLEGMGEGFMLLDRDFRILQMNAEGFRLEERPPGEVLGSSHWEIYPGSEQMPIG 230

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
              L +    +P   +   +  + +          +    +  Y              E 
Sbjct: 231 QMYLRAMRERMPLTLEHRHVWPDGHAAWLEVRAYPHPEGLALFYRDVTERREREKALREA 290

Query: 319 ENLTPETVDKCPIP----FFVYSHG---NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
           E       D  P        +   G      Y +  F  +T   +   +        L+ 
Sbjct: 291 EARLRALADNLPGGMVYQIAMDRDGSNRRFLYVSRGFERMTGMSAEAALLDPAAAYDLIL 350

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
                   A +   +   D             + +         I   +       +  +
Sbjct: 351 PEYREGLAAAE--HVAIRDLAPFDFE---TPFRRSDGEVRWSRIISAPRRQPDGSLV-WD 404

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
           GI+ +D D +  + ++     +  +I  +    +     +G     N+      G P   
Sbjct: 405 GIQFDDTDRKQVEERLRESEAKFQAIANSIDQMVWSTGPDGHHDYFNQRWYDFTGVPAGS 464

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
              K +   +     +      +  L+      +E      T + +    R +  +    
Sbjct: 465 TDGKDWEDIVHPGDRARTWTSWSACLATGEPYRIEYRLRHRTGQYRWTLGRALPMRDEAG 524

Query: 552 S--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
               +  T  DI +  + +  L+ +++  E+  + ++
Sbjct: 525 RITRWFGTCTDIQDIVEAREVLARSREDLERLVAERT 561



 Score = 84.7 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 53/423 (12%), Positives = 109/423 (25%), Gaps = 41/423 (9%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL-LKRQNTWY 144
            W+    G+    ++      G  A    G    D+                L     + 
Sbjct: 438 VWSTGPDGHHDYFNQRWYDFTGVPAGSTDGKDWEDIVHPGDRARTWTSWSACLATGEPYR 497

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            +  L    G   Y      ALP+       +  R FG     +   + R +  R  +  
Sbjct: 498 IEYRLRHRTG--QYRWTLGRALPMRDEAGRIT--RWFGTCTDIQDIVEAREVLARSREDL 553

Query: 205 SHLH-----------EIKKGHSSVEKEKYDIFSQQSPPPHL---RMKNKVSSLTEYYAHK 250
             L             +      V +    I +       L     +  + S      H 
Sbjct: 554 ERLVAERTADRDRMWRLSTDVMLVARYDATIEAVNPAWTTLLGWDERELIGSAFMDLVHP 613

Query: 251 DDVLKT-EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
           DDV  T  +   L+   ++L  +  +   + +           ++               
Sbjct: 614 DDVASTLAEVGKLSGGVTTLRFENRYRQKDGSYRWLSWTAVPAEDLIHAVG------RDI 667

Query: 310 SLSAYFDEGENLTPETVDKCP--IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
           +      +    T E + +          + G     N     +    S+D ++      
Sbjct: 668 TAEKEAAQALAETEEALRQAQKMEAVGQLTGGIAHDFNNLLTGIVG--SLDMMQTRVAQG 725

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
                 K +                 +A + R          +  +T +         E 
Sbjct: 726 RTDTIEKYAKAAMSSANRAAALTHRLLAFARRQPLDPKPVNANTLVTSLEDLLRRTIGEA 785

Query: 428 MPQNGIEPEDVDTRI-NKRKMEIEVMQLC-SILEATSDGIAIINREGIILSTN----RAV 481
           +    +    +   + +  ++E  V+ L  +  +A  DG      +  I + N    RA 
Sbjct: 786 VSLEIVTAGGLWPTLCDPHQLESAVLNLAINARDAMPDG-----GKLTIETCNTHLDRAY 840

Query: 482 SKL 484
           +KL
Sbjct: 841 AKL 843


>gi|238918557|ref|YP_002932071.1| aerobic respiration control sensor protein ArcB [Edwardsiella
           ictaluri 93-146]
 gi|238868125|gb|ACR67836.1| aerobic respiration control sensor protein ArcB [Edwardsiella
           ictaluri 93-146]
          Length = 778

 Score =  314 bits (804), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 85/444 (19%), Positives = 185/444 (41%), Gaps = 19/444 (4%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L            +L+    +    L        KA +    +  + ++ E
Sbjct: 81  EESRQRLSKLVNKLEEMRHRDLKLNQQLKDNIRQLNQEIADRVKAEEARLQVL-DTLQHE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
                + + ++E +   L S L+++ D +   N  G     NRA+  L G   + ++   
Sbjct: 140 IDQRELAQVELEQQSALLRSFLDSSPDLVYYRNENGEFSGCNRAMELLTGKSEKQLIGLT 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII--KKLPFSSCY 554
                +Q+    +     ++   ++  T E+  +     +    LR +    ++      
Sbjct: 200 PRDVYDQDIAQKVIETDEKVFRHNVSLTYEQWLVYPDGRKACFELRKVPFYDRVGKRHGL 259

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+ ++ L +        S  K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 260 MGFGRDITERKRYQDALEN-------ASRDKTTFISTISHELRTPLNGIVGLSRILLDTE 312

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                N   ++Y   I  S   + +I ND++++ K+E  K+ L  + +     +++  +L
Sbjct: 313 L----NEEQLKYLKTIHVSAIALGNIFNDIIEMDKLERRKVQLDNQTIDFTGFLTDLENL 368

Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
             L    K +    +    +P  ++ D   ++QI  N++ NA+ FT  GG + +      
Sbjct: 369 SGLLVQPKGLSFTLAPDPALPHKVMVDGTRLRQILWNLIGNAVKFTQRGG-VSVRVWREQ 427

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMGKF 792
            ++++  VRDTG+G+   E +K    + Q+ +    +   GTG+GL ++K +     G  
Sbjct: 428 QDKLLFEVRDTGIGIPPEEQDKIFAMYYQVKDMHGGKPATGTGIGLAVSKRLAQTMGGDI 487

Query: 793 YIFSTPAKGTLIEIIF--PLYDTS 814
            + S   +G    +    P+ + +
Sbjct: 488 VVSSVAGEGACFTLSICAPVVEET 511



 Score = 42.3 bits (98), Expect = 0.37,   Method: Composition-based stats.
 Identities = 19/127 (14%), Positives = 37/127 (29%), Gaps = 5/127 (3%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN-TWYGKTTLW 150
           +G     +  +    G    ++IG+   DV D           + + R N +   +  L 
Sbjct: 174 NGEFSGCNRAMELLTGKSEKQLIGLTPRDVYDQDIAQKVIETDEKVFRHNVSLTYEQWLV 233

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
             +G       +L  +P Y R  +  G  GFG           +   +   +  +     
Sbjct: 234 YPDGRKACF--ELRKVPFYDRVGKRHGLMGFG--RDITERKRYQDALENASRDKTTFIST 289

Query: 211 KKGHSSV 217
                  
Sbjct: 290 ISHELRT 296


>gi|71907206|ref|YP_284793.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
 gi|71846827|gb|AAZ46323.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
          Length = 841

 Score =  314 bits (804), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 104/446 (23%), Positives = 180/446 (40%), Gaps = 40/446 (8%)

Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKA--NQFPENMPQNGIEPEDVDTRINKRKME 448
           R     S  L+T +  +E +  +                +  + I        +   +  
Sbjct: 178 RGGATVSIDLNTYRSAQEPTWRVIRYWHTGIWLLGIATILLLHYIARRRTADLLRVEEGR 237

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
            E         A ++G  I + EG IL  N A  ++ GY  E+++     +         
Sbjct: 238 RENEM---AFAAMAEGAVITDSEGTILWVNDAFCQISGYAREEVIGANPRILKSGVHDRD 294

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEW 564
               L   L                K  ++    I ++ L   +     Y     DI+E 
Sbjct: 295 FYAALWRQLMQTGHWRG--EIWNKRKNGEIYPEEISMQALRAPNGSIHRYISIFSDITER 352

Query: 565 KQEKNKLSHA------------------KKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
           K+ + +L+                    +  AE  +  KS FLA +SHE+RTPL A+IGF
Sbjct: 353 KKTERELASHHERLEEQVRERTEELSVARDQAEAANQSKSAFLANMSHELRTPLNAVIGF 412

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
           S++++     P   P        I+ SG  +L ++ND+L++SKIESGK+ +  E   L  
Sbjct: 413 SQLMEKD---PGLLPVQQRNLEIINHSGRHLLTLINDILELSKIESGKLRMTTEETDLRL 469

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726
            + + + ++ L A +  + ++    N  P I+ D    +QI LN+LSNA+ FTP G ++ 
Sbjct: 470 LLEQVVEMMHLRAQQLGLQLKLETTNLPPLIVIDPGMFRQILLNLLSNALKFTPKG-EVC 528

Query: 727 ISTTHT----SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
           +             +   VRDTG+G++  + E+    F Q+         GTGLGL +++
Sbjct: 529 LHVAAEAVSAQQSRIRFSVRDTGIGISENDRERIFSSFEQVGPM---HQGGTGLGLTISR 585

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIF 808
             V+   G+  + S    G+      
Sbjct: 586 RYVEMLGGELSVDSELGNGSDFHFTI 611



 Score = 61.2 bits (147), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 19/153 (12%), Positives = 48/153 (31%), Gaps = 5/153 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKRQNTWYGKT 147
            D+ G +  +++   +  G    ++IG     + S +   D    +   L +   W G+ 
Sbjct: 254 TDSEGTILWVNDAFCQISGYAREEVIGANPRILKSGVHDRDFYAALWRQLMQTGHWRGEI 313

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                 G     P +++   + + N      R   I                  ++    
Sbjct: 314 WNKRKNGEIY--PEEISMQALRAPNGSI--HRYISIFSDITERKKTERELASHHERLEEQ 369

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV 240
              +    SV +++ +  +Q        M +++
Sbjct: 370 VRERTEELSVARDQAEAANQSKSAFLANMSHEL 402



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/151 (10%), Positives = 38/151 (25%), Gaps = 8/151 (5%)

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAG 364
           R   +     +EG                +    G + + N +F  ++ Y   + I    
Sbjct: 224 RRRTADLLRVEEGRRENEMAFAAMAEGAVITDSEGTILWVNDAFCQISGYAREEVIGANP 283

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
            +       K   ++      L+R           +   + N E                
Sbjct: 284 RI------LKSGVHDRDFYAALWRQLMQTGHWRGEIWNKRKNGE-IYPEEISMQALRAPN 336

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
                   I  +  + +  +R++     +L 
Sbjct: 337 GSIHRYISIFSDITERKKTERELASHHERLE 367


>gi|313159288|gb|EFR58653.1| prevent-host-death family protein [Alistipes sp. HGB5]
          Length = 651

 Score =  314 bits (804), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 93/520 (17%), Positives = 185/520 (35%), Gaps = 32/520 (6%)

Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
                   E L     D   +   +Y   G L   N   L +   K  +++         
Sbjct: 14  AHEALFNSEKLLRNIFDNVQVGVELYDREGYLVDLNNKDLEIFGLKKKEEVLGVNFFRNP 73

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR------ENSLAMTFIPFEKANQ 423
           L             +     +    A     H  + +         ++ +        + 
Sbjct: 74  LVP---------GEIRENVRNGQEQAFKLDYHFNRLDGYYSSGKNGNVQIYTTVTMLYDM 124

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           + E +    I  ++ +      ++         +      G A  +              
Sbjct: 125 YGELINFVVINIDNTEINEAYSRLAEFESSFSLVSRFGKVGYARFDLMTRDGYAVPQWFH 184

Query: 484 LFGYPVEDILRKPF--TVFLEQNTPSVMNHYLTEILSLDLRQ-TLEKITLGSTKEEKLLS 540
             G   +  + +      +++      +   +  + + +    TL+       +      
Sbjct: 185 NLGEESDTPMPQVIGVYNYVDPEDRDAIFREIRRVKAGESNGFTLDLRVTPKGEPTGWTR 244

Query: 541 LRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
           + ++   L              D++E KQ +  L  AK  AE     KS FLA +SHEIR
Sbjct: 245 VNVVRNPLNTDPSKIEMVCVNFDVTELKQTEKNLIEAKNKAEVSDRLKSAFLANMSHEIR 304

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TPL AI+GFS ++              EY   ++ +  L+L +++D+LD+SKIE+G    
Sbjct: 305 TPLNAIVGFSNLLAETD----DIGERREYMRVVEENNELLLKLISDILDLSKIEAGTFEF 360

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
           ++  V ++    E +  + L   +K + +     +    ++ D   + Q+  N ++NA+ 
Sbjct: 361 NYGRVDVNRMCEETVCSLSLKVKDKPVELIFGEHDAQCCVVGDKNRLIQVITNFINNAVK 420

Query: 718 FTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
           FT  G  I +    T   E++  V DTG G++    +     F ++ +      +GTGLG
Sbjct: 421 FTDEGS-ITLGYR-TEGGELLFHVEDTGSGISEEHRQSIFDRFVKLNSF----AQGTGLG 474

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
           L ++K++V+   G+  + S   +G+      P      P 
Sbjct: 475 LSISKSIVEQMGGRIGVESEVGRGSRFWFTIPAVTCDAPE 514



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/158 (13%), Positives = 51/158 (32%), Gaps = 8/158 (5%)

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-PVED 491
           +  +  D       +      L +I +    G+ + +REG ++  N    ++FG    E+
Sbjct: 4   LFSDTTDVHNAHEALFNSEKLLRNIFDNVQVGVELYDREGYLVDLNNKDLEIFGLKKKEE 63

Query: 492 ILRKPFT--VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
           +L   F     +       + +   +   LD           S K    + +   +  L 
Sbjct: 64  VLGVNFFRNPLVPGEIRENVRNGQEQAFKLDYHFNRLDGYYSSGKNGN-VQIYTTVTMLY 122

Query: 550 FSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
                   + +   D +E  +  ++L+  +      S 
Sbjct: 123 DMYGELINFVVINIDNTEINEAYSRLAEFESSFSLVSR 160


>gi|296104922|ref|YP_003615068.1| aerobic respiration control sensor protein ArcB [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
 gi|295059381|gb|ADF64119.1| aerobic respiration control sensor protein ArcB [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
          Length = 777

 Score =  314 bits (804), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 85/435 (19%), Positives = 179/435 (41%), Gaps = 17/435 (3%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L            +L  +Q     +     I   +  +         ++ E
Sbjct: 81  EESRQRLSKLVDKLEEMRERDLKL-NVQLKDNIAQLNQEISDREKAEAERQATLEQLKIE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             +  + + ++E +   L S L+A+ D +   N +      NRA+  L G   + ++   
Sbjct: 140 MKEREVTQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLIHLK 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCY 554
                 +   + +     ++   ++  T E+        +    +R +    ++      
Sbjct: 200 PQDVYSEEAAAKVMETDEKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGL 259

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+        +   E+ S  K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 260 MGFGRDITERKR-------YQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTD 312

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     +Y   I  S   + +I ND++D+ K+E  K+ L  +PV     +++  +L
Sbjct: 313 LTA----EQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTSFLADLENL 368

Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
             L A +K +         +P  ++ D   ++QI  N++SNA+ FT  G Q+ +   +  
Sbjct: 369 SGLQAQQKGLSFVMEPTLPLPHKVVTDGTRLRQILWNLISNAVKFTQQG-QVAVRIRYDE 427

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMGKF 792
            + +   V D+G+G+   E +K    + Q+ +S   +   GTG+GL ++K +  +  G  
Sbjct: 428 GDMLHFEVEDSGIGIPQEEQDKIFAMYYQVKDSNGGKPATGTGIGLAVSKRLAKSMGGDI 487

Query: 793 YIFSTPAKGTLIEII 807
            + S   KG+   + 
Sbjct: 488 TVASQAGKGSTFTLT 502



 Score = 43.1 bits (100), Expect = 0.19,   Method: Composition-based stats.
 Identities = 15/161 (9%), Positives = 38/161 (23%), Gaps = 8/161 (4%)

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIE 361
           +  +         ++  +     +D  P   F  +        N +  LLT       I 
Sbjct: 138 IEMKEREVTQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLI- 196

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                  L      S+  A K +           +      + +                
Sbjct: 197 ------HLKPQDVYSEEAAAKVMETDEKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYY 250

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
           ++  +     G   +  + +  +  +E       + +   S
Sbjct: 251 DRVGKRHGLMGFGRDITERKRYQDALERASRDKTTFISTIS 291


>gi|295703077|ref|YP_003596152.1| two-component sensor histidine kinase/response regulator [Bacillus
           megaterium DSM 319]
 gi|294800736|gb|ADF37802.1| two-component sensor histidine kinase/response regulator [Bacillus
           megaterium DSM 319]
          Length = 957

 Score =  314 bits (804), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 85/383 (22%), Positives = 172/383 (44%), Gaps = 30/383 (7%)

Query: 448 EIEVMQL--CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED-ILRKPFTVFLEQN 504
           E E  +L    IL +  +G+ +++  G IL  N  +S+LF Y  +  +L+     +L+  
Sbjct: 454 ESEHDRLLSQDILNSIQEGMQLVDTSGTILQVNTKISELFQYEHQSGLLQLSLDQWLDAL 513

Query: 505 TPS-----VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL-RIIIKKLPFSSCYSLTM 558
           +        +  Y+  I   +  +      L +  + K++ +    + +           
Sbjct: 514 SQKVENIGQLRQYVEAICKGEQVEKSFIYYLHTESKRKVIKVYSEYVYRKRQMFGVLFVH 573

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            DI+                 +    KS+F++ VSHE+RTPL +++GF+E++ N+    L
Sbjct: 574 RDIT--------------KEFEVDQMKSEFVSTVSHELRTPLASVLGFTELMLNK---TL 616

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
              R  +Y   I +    +  ++ND LD+ ++E+GK     +   +   + + I + ++ 
Sbjct: 617 KEERQKKYLTTIYQEAQRLTSLINDFLDVQRMEAGKQTYDKKYQDILPLIKQVIEVQKIQ 676

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738
            ++               ++ D   + Q+  N++SNA+ ++P GG + +   +     V 
Sbjct: 677 TSKH--EFDMISDQEHFTVMGDKDKLLQLFNNVISNAVKYSPDGGNVTVKV-YQKEHAVY 733

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           + ++D G+G+ N  L +    F ++ NS   +  GTGLGL + K +V A+ G   + S  
Sbjct: 734 IDIQDEGIGIPNKALGQLFTKFYRVDNSDMRKIGGTGLGLAIVKEIVKAHGGDITVQSEW 793

Query: 799 AKGTLIEIIFP-LYDTSHPHDCI 820
            KGT   ++ P LY+  +  + I
Sbjct: 794 KKGTTFTVVLPLLYEVQYDEEMI 816


>gi|89099307|ref|ZP_01172184.1| two-component sensor histidine kinase [Bacillus sp. NRRL B-14911]
 gi|89085916|gb|EAR65040.1| two-component sensor histidine kinase [Bacillus sp. NRRL B-14911]
          Length = 617

 Score =  314 bits (804), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 91/535 (17%), Positives = 193/535 (36%), Gaps = 39/535 (7%)

Query: 279 NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET-VDKCPIPFFVYS 337
           N +    +     L ++      +        L     + E+L  +  V+      +   
Sbjct: 105 NGSLAYFEFTTSRLPDSRLLLSIFRDVTEKRRLEQKIRKHEDLYKDLFVEALDGIVYWKD 164

Query: 338 HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397
            G +  AN +   + +    + +        L       D +  + +     +       
Sbjct: 165 KGTIINANQAACRIFESTHDELLAGKVDDFVLHK-----DESYFQILEELYKEGQ---VR 216

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
             L  +  N +  L    +                I     +    + ++     +  SI
Sbjct: 217 NELFFLMPNGQKKLLEFTVKL-----NAVEGYHMTIFRNVSERHKMEEELRESERKFRSI 271

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN--TPSVMNHYLTE 515
            E   +G+ + +    I+  N +  ++      +I+ +     L     T   +  +L E
Sbjct: 272 FEGALEGLILWDENFTIVDINASGERMLQMSQHEIVGQSLLALLNDCNITEEELRMHLEE 331

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575
           +                 K  + +     +K+  FS     T  DI+E  + +++L  + 
Sbjct: 332 LSGSGQS---NGTISYILKSGRKMHFEFSLKQNVFSGLSLTTFKDITEKLEMEDQLKKSD 388

Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
            +            A ++HEIR P+TA+ GF +++++             Y N I     
Sbjct: 389 TLNV-----IGQLAAGIAHEIRNPMTALKGFIQLLEDSAGSGNS-----MYFNIITSELQ 438

Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695
            +  I+N+ L ++K ++    + +    + + + E + L+   A    +  RT +A N+P
Sbjct: 439 RIDSIINEFLILAKPQA----IQYVEKDIIQLMKETVELLTAQAVLHNVQFRTDYAKNLP 494

Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755
            +  +   +K++ +NI+ NAI   P GG I I         + + +RD G G+   +L K
Sbjct: 495 LVFCEPNQLKKVFINIIKNAIEVMPKGGIITICIQKNRTGSIRISIRDEGSGIPPEKLRK 554

Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             +PF         +  GTGLGL +   +++ + G   + S   +GT+  I  P+
Sbjct: 555 LGEPFYTT------KERGTGLGLMVTYKIIEEHEGNIEVESKMGEGTVFHIDLPI 603



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/151 (13%), Positives = 53/151 (35%), Gaps = 15/151 (9%)

Query: 438 VDTRINKRKMEIEVMQLCS-----------ILEATSDGIAIINREGIILSTNRAVSKLFG 486
           ++ RI   ++E E ++  +           + ++ +DG+ I   +  I++ N A+S+  G
Sbjct: 1   MEERIAVLELENERLKQAAEQMGKSVVANHVFDSAADGMIIYTEQREIIAVNPAMSRFLG 60

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
                         +  +    +      + S +  +      L       L        
Sbjct: 61  TEKGQFEGLRLDDLVPVDYHFKLEKQKKLLQSQEKVKG----VLPMANNGSLAYFEFTTS 116

Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSHAKKI 577
           +LP S        D++E ++ + K+   + +
Sbjct: 117 RLPDSRLLLSIFRDVTEKRRLEQKIRKHEDL 147



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/273 (10%), Positives = 71/273 (26%), Gaps = 16/273 (5%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEG 154
           +  ++  + + +G    +  G+RL D+  + +         LL+ Q    G        G
Sbjct: 48  IIAVNPAMSRFLGTEKGQFEGLRLDDLVPVDYHFKLEKQKKLLQSQEKVKGV-LPMANNG 106

Query: 155 TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214
           +  Y     + LP    +R         I              ++ +  +  L       
Sbjct: 107 SLAYFEFTTSRLP---DSRLL-----LSIFRDVTEKRRLEQKIRKHEDLYKDLFVEALDG 158

Query: 215 SSVEKEKYDIFSQQSPP----PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270
               K+K  I +              +     + ++  HKD+        L    +  + 
Sbjct: 159 IVYWKDKGTIINANQAACRIFESTHDELLAGKVDDFVLHKDESYFQILEELYKEGQ--VR 216

Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330
            +  F   N  +   +               + +      +     E E       +   
Sbjct: 217 NELFFLMPNGQKKLLEFTVKLNAVEGYHMTIFRNVSERHKMEEELRESERKFRSIFEGAL 276

Query: 331 IPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEI 362
               ++     +   N S   + +    + +  
Sbjct: 277 EGLILWDENFTIVDINASGERMLQMSQHEIVGQ 309


>gi|315221423|ref|ZP_07863344.1| PAS domain S-box [Streptococcus anginosus F0211]
 gi|315189542|gb|EFU23236.1| PAS domain S-box [Streptococcus anginosus F0211]
          Length = 450

 Score =  314 bits (804), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 90/403 (22%), Positives = 173/403 (42%), Gaps = 34/403 (8%)

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDT-RINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
           +         PE         +  +  R+    +E E  +L SIL   +DG+   NR G 
Sbjct: 56  YSEVLDMQGGPEITDITNSINDLSEVIRLTHENLEQETKRLSSILSYMTDGVLATNRRGQ 115

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
           I+  N   +K  G    +  +      L+      +   +T++  L +    E       
Sbjct: 116 IIMINDMATKQLGVKESEARKMNILKLLDIEDEYDLRDLITKVPELTIDSQDE------- 168

Query: 534 KEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
              + LSLR+    +   S +       +HD +E ++E+ +                 F+
Sbjct: 169 -NGEFLSLRVRFALIRRESGFISGLVAVLHDTTEQEKEERERRL--------------FV 213

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
           + VSHE+RTPLT++  + E +     G L  P   ++        N ++ +V+DLL +S+
Sbjct: 214 SNVSHELRTPLTSVKSYLEAL---DEGALSEPVAPDFIKVSLDETNRMMRMVSDLLSLSR 270

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLV---QLYANEKRILIRTSFANNIPRILADLRSVKQ 706
           I++   +L  E  +    ++  ++     +   ++K+  I   +  N   +  D   + Q
Sbjct: 271 IDNATSHLDIELTNFTAFITFILNRFDKIRSQNDDKKYEIIRDYPINSIWVEIDTDKMTQ 330

Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
           +  NI++NAI ++P GG+I +S   T  + + L + D G+G+   +L K    F ++  +
Sbjct: 331 VIDNIINNAIKYSPDGGKITVSMKTTDTQMI-LSISDEGLGIPKKDLPKIFDRFYRVDKA 389

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +     G+GLGL +AK ++  + G  +  S   KG+   I+ P
Sbjct: 390 RSRAQGGSGLGLAIAKEIIKQHHGFIWAKSEYGKGSTFTIVLP 432


>gi|163789833|ref|ZP_02184269.1| two-component sensor histidine kinase [Carnobacterium sp. AT7]
 gi|159874773|gb|EDP68841.1| two-component sensor histidine kinase [Carnobacterium sp. AT7]
          Length = 419

 Score =  314 bits (804), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 82/387 (21%), Positives = 170/387 (43%), Gaps = 23/387 (5%)

Query: 428 MPQNGIEPEDVDTRINKRKME--IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
           +   G    D+ T + ++ +E      +L  ++     G+ +I+   II   N A+S + 
Sbjct: 53  VADLGETINDLATSLEEQNLELVQNDKRLYELINHLVIGVMLIDEHRIIKMVNPAMSVIL 112

Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
           G  V  ++   +    +    S M     +       +           +  ++ +    
Sbjct: 113 GEDVSQLVGNSYVEATKSYGLSHMIEMAYQKNEQQNDEIYFYYPKDKIVDANIVPID--- 169

Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
            K P      + ++DI+E ++ +                ++DF+   SHE++TP+TA+ G
Sbjct: 170 GKEPGEQNLIVLLYDITEIRRLE--------------KVRTDFVTNASHELKTPVTALKG 215

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
           FSE + +            ++   +    + +  +VND+L++SK+E  ++ L  E ++L 
Sbjct: 216 FSETLLDGAM--EDKEVLKQFLEIMLAESSRLDFLVNDILELSKLEQKQVPLKIEEINLT 273

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725
           EAV     LV+  A+EK++ +      +   I  D   +KQI  N+++NA+ +T   G++
Sbjct: 274 EAVISTFQLVKQKADEKKMKLNI-IEEDNLFITGDSSRLKQILANLINNAVVYTQESGEV 332

Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
            ++     N   +++V D G+G+   E ++  + F ++  ++     GTGLGL + K +V
Sbjct: 333 EVTIKKE-NNFAVIKVSDNGIGIPEDEQDRIFERFYRVDKARSRNSGGTGLGLSIVKYLV 391

Query: 786 DANMGKFYIFSTPAKGTLIEIIFPLYD 812
           +   G   + S    GT   +  P+  
Sbjct: 392 ENLNGFITVESKLGLGTTFIVKLPIQP 418


>gi|229082672|ref|ZP_04215130.1| hypothetical protein bcere0023_52870 [Bacillus cereus Rock4-2]
 gi|229181711|ref|ZP_04309034.1| hypothetical protein bcere0005_50500 [Bacillus cereus 172560W]
 gi|228601744|gb|EEK59242.1| hypothetical protein bcere0005_50500 [Bacillus cereus 172560W]
 gi|228700638|gb|EEL53166.1| hypothetical protein bcere0023_52870 [Bacillus cereus Rock4-2]
          Length = 588

 Score =  313 bits (803), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 83/372 (22%), Positives = 158/372 (42%), Gaps = 25/372 (6%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +  +   E E  +L S+L   +DG+   +R+G I+  N    K+     E  L +     
Sbjct: 233 QQARSSTESERRKLSSVLSHMTDGVIATDRKGDIILLNDPAEKMLNVSRETALDQSVLEV 292

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
           L       ++H   E  S+ L  +                  +I K+   ++     ++D
Sbjct: 293 LGIQEEFTLDHLYEEPDSVLLDFSTRNEPYILRAS-----FSVIQKETGKANGLIAVLYD 347

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           ++                E+    + +F+A VSHE+RTPLT +  + E + +  +     
Sbjct: 348 VT--------------EQERIERERREFVANVSHELRTPLTTMRSYLEALTDGAWQDPNI 393

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
                +          ++ +VN LL +SK++S +  L  E V   +  +  I   +  + 
Sbjct: 394 APQ--FLTVTQEETERMIRLVNALLQLSKLDSTEHRLMKEWVDFTDFFNNIIDRFE-MSK 450

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV-IL 739
           E+ +  + SF+     I  D   + Q+  NI+SNA+ ++P GG +          ++  +
Sbjct: 451 EQNVSFKRSFSKKSRFIDMDTDKITQVLYNIISNALKYSPEGGTVT--YRLRDRGDLLEI 508

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V D G+G+    ++K  + F ++  ++  +  GTGLGL +AK M++A+ G  +  S   
Sbjct: 509 SVSDQGMGIPKENVDKIFERFYRVDKARSRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEG 568

Query: 800 KGTLIEIIFPLY 811
           KGT I    P+ 
Sbjct: 569 KGTTIYFTLPMA 580


>gi|77165908|ref|YP_344433.1| PAS sensor signal transduction histidine kinase [Nitrosococcus
           oceani ATCC 19707]
 gi|254433473|ref|ZP_05046981.1| PAS fold family [Nitrosococcus oceani AFC27]
 gi|76884222|gb|ABA58903.1| PAS/PAC sensor signal transduction histidine kinase [Nitrosococcus
           oceani ATCC 19707]
 gi|207089806|gb|EDZ67077.1| PAS fold family [Nitrosococcus oceani AFC27]
          Length = 499

 Score =  313 bits (803), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 98/503 (19%), Positives = 190/503 (37%), Gaps = 39/503 (7%)

Query: 325 TVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
            ++       +    G + ++N +      Y   + +     +  L+       +     
Sbjct: 14  LLESASNALLISDHKGQIVFSNTALEKCFGYTGKELLG--LTIEDLIPKRFRLQHKTYHA 71

Query: 384 VMLY--RSDRTCIAASARLHTIQWN-RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
             +       T    S  L  +  +       +              +    I  +    
Sbjct: 72  DYIASSHLHGTHQGLSDTLKPLGLHKNGTEFPLEVSLIPLETSTG--LYVLSIIQDITPQ 129

Query: 441 RINKRK-------MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
           R  +               +L +IL   +DGI +I+  GII + N    +LFGY   + +
Sbjct: 130 RSAEEAPSQYQALAWESKARLQAILNTATDGIIVIDENGIIETFNPGAERLFGYKAAEAI 189

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIK--KLP 549
            +   + +          Y+   L     + +   + T G  K      + I I   +L 
Sbjct: 190 GQNILILMPSPHREQGTGYIERYLQTGQGEFIGASRETTGMRKNGSTFPIDISISEMRLG 249

Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
               ++  + DI+E         H  K  E++++    F+  VSH++R+PL  I GFS  
Sbjct: 250 ERRLFTGIVRDITER--------HHFKELEEKNAELERFIYTVSHDLRSPLITIQGFS-G 300

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           +  Q F      + +E    I  +   +  +++DLL++S+I  G++    E  SL + V 
Sbjct: 301 MLKQSFTQHNQEQILEDIGRIQAAAGKMQLLLDDLLELSRI--GRLLNRPEKFSLSDLVH 358

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
           EAI LVQ    +  + I+   A  +P +  D R + ++  N++ NA+ F        I  
Sbjct: 359 EAIELVQGAITKGGVQIKV--APTLPHLFGDRRRLLEVMQNLIENAVKFMGDQKAPRIEI 416

Query: 730 -THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
             +    +++  VRD G+G+     +K    F    +S     EGTG+GL + K +++ +
Sbjct: 417 NAYEEEGKLLCYVRDNGMGINPRYHDKIFNLF----DSLHQSVEGTGIGLAIVKRIIEVH 472

Query: 789 MGKFYIFST--PAKGTLIEIIFP 809
            G  ++ S     +G+      P
Sbjct: 473 KGHVWVQSAGVVGQGSTFYFSLP 495



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 56/152 (36%), Gaps = 9/152 (5%)

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV- 508
            V     +LE+ S+ + I + +G I+ +N A+ K FGY  +++L       + +      
Sbjct: 7   RVESFKHLLESASNALLISDHKGQIVFSNTALEKCFGYTGKELLGLTIEDLIPKRFRLQH 66

Query: 509 ---MNHYLTEILSLDLRQTLEKIT--LGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDI 561
                 Y+         Q L      LG  K      L + +  L  S+       + DI
Sbjct: 67  KTYHADYIASSHLHGTHQGLSDTLKPLGLHKNGTEFPLEVSLIPLETSTGLYVLSIIQDI 126

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
           +  +  +   S  + +A + S  +   +   +
Sbjct: 127 TPQRSAEEAPSQYQALAWE-SKARLQAILNTA 157



 Score = 43.9 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 45/122 (36%), Gaps = 11/122 (9%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTW---- 143
           ID +G ++  +    +  G  A + IG  +  +    H +    +I   L+         
Sbjct: 164 IDENGIIETFNPGAERLFGYKAAEAIGQNILILMPSPHREQGTGYIERYLQTGQGEFIGA 223

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +TT     G+   + I ++ + +  R R F+G     IV      +  + L ++  + 
Sbjct: 224 SRETTGMRKNGSTFPIDISISEMRLGER-RLFTG-----IVRDITERHHFKELEEKNAEL 277

Query: 204 FS 205
             
Sbjct: 278 ER 279


>gi|239624050|ref|ZP_04667081.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239522081|gb|EEQ61947.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 862

 Score =  313 bits (803), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 99/568 (17%), Positives = 206/568 (36%), Gaps = 56/568 (9%)

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
                   +  ++            +        + L           + +        +
Sbjct: 37  PQREGGHAWANLSGTIRIDPATGAPVLQAEFAGVDTLVAVKEE-QERLYRQKLQYFHWML 95

Query: 327 DKCPIPFFVYSHG--NLFYANPSFLLLTKYKSV--------DDIEIAGGLSTLLDAPKLS 376
           D      +V       L Y N     +    +V        + I+            +L+
Sbjct: 96  DTYEGNVYVSDMDDYELLYVNQHSCDVLGMPAVKLVGRKCYEVIQGRTTPCPFCTNNRLT 155

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           +++  +                R+  I W    +                          
Sbjct: 156 EDDFYEWEFQNPVLERTFWIKNRI--IDWKGHRARLELSHDMYS---------------- 197

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE--GIILSTNRAVSKLFGYPVEDILR 494
             + ++ K+  E E     +++ +   G+A I+      +L  +    +L GY  E    
Sbjct: 198 -TEYKLAKKDQERE-----ALIRSIPGGLARIDGRDMQTVLWYSGGFLELIGYTEEQFEE 251

Query: 495 KPFTVF--LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP--- 549
           +  +    +  +    +   + +          E   +      K+L +           
Sbjct: 252 ELCSQCDYIHPDDIERIAGVMEQSRITGGATAAEIRIVTHDGTVKILMVTYSYVSEDKSW 311

Query: 550 -FSSCYSLTMHDISEWKQEK----NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
                Y     D++  ++E+      L  A K A+  +  K++FL+ +SH+IRTP+ AII
Sbjct: 312 DGVPSYYSVGVDVTAERREQARQKQALEDACKTAQIANDAKTNFLSSMSHDIRTPMNAII 371

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           G S + +     P    +  +  N I+ S   +L ++N++LD+SKIESGK++L  E +SL
Sbjct: 372 GMSVIAQANLKAP---EKIQDCLNKINVSSRHLLSLINEVLDMSKIESGKIDLISETISL 428

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGG 723
            E + + + + +  A EK   ++ +  +     ++ D   ++Q+ +N+LSNA+ +TP GG
Sbjct: 429 PELIEDVMDVFRPLAAEKHQELQVNADHVRHENVITDQNRLRQVLVNLLSNAVKYTPDGG 488

Query: 724 QIIISTTHTS-----NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
            + +             +    V D G+GM+   L    +PF +  +    + +GTGLG+
Sbjct: 489 CVGLWIREVPSFAKGRGQYEFIVTDNGIGMSEEFLPHVFEPFARAKDPTINQVQGTGLGM 548

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEI 806
            + + +V    G   + S P +G+   +
Sbjct: 549 AITQNIVRMMNGTIEVRSNPGQGSRFIV 576


>gi|134299413|ref|YP_001112909.1| multi-sensor hybrid histidine kinase [Desulfotomaculum reducens
           MI-1]
 gi|134052113|gb|ABO50084.1| GAF sensor hybrid histidine kinase [Desulfotomaculum reducens MI-1]
          Length = 1021

 Score =  313 bits (803), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 88/400 (22%), Positives = 170/400 (42%), Gaps = 36/400 (9%)

Query: 429 PQNGIEPEDVDTR----INKRKMEIEVMQL-------CSILEATSDGIAIINREGIILST 477
               +  + ++          ++E E   L        S++E+ ++ I ++N +  +++ 
Sbjct: 457 RIEKMYEDILEQAALVEQLNAQLETEKDNLSRAREITRSVVESINEAIVMVNIDDEVVAV 516

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQN-TPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
           N+   +LF Y   D+      V    +      +      L+  +   + +    + +E 
Sbjct: 517 NKRWQELFEYEG-DLRGSSSEVLFRTSIDCLENSAEAYNKLTEIMAHPMNQGEFNAVQEN 575

Query: 537 KLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
           ++L +          +         DI+              I  +    KS+F++ VSH
Sbjct: 576 RVLRVWTGPVLDRAENLIGRLYVFRDIT--------------IEAEVDRMKSEFVSTVSH 621

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           E+RTPL++I+GFSE++       L      +Y   I +    + D+VND LD+ ++E GK
Sbjct: 622 ELRTPLSSILGFSELLL---IKKLSEEARTKYTKTIHKEAKRLTDLVNDFLDLQRMELGK 678

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714
                E     + ++E +        +  I ++T        I AD   V Q+ +N+LSN
Sbjct: 679 QVYDKEDFIALDLLAEVVESFAASGVDHDITLQTV---ERFFINADKERVTQVLINLLSN 735

Query: 715 AIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           A+ F+P G +I +  T    E     ++D G+G+     +     F ++ NS + +  GT
Sbjct: 736 AVKFSPKGTKITLGVTP-DEEYAKFFIKDQGLGIPKDVQDNLFSKFYRVDNSDRRKIGGT 794

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           GLGL + K +V+A+ GK ++ S    G++      L + S
Sbjct: 795 GLGLSICKEIVEAHGGKIWVESEHGHGSVFYFTVKLSEKS 834


>gi|324991493|gb|EGC23426.1| sensor histidine kinase VicK [Streptococcus sanguinis SK353]
          Length = 449

 Score =  313 bits (803), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 90/403 (22%), Positives = 169/403 (41%), Gaps = 34/403 (8%)

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDT-RINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
           +         PE         +  +  R+    +E E  +L SIL   +DG+   NR G 
Sbjct: 56  YSEVLDMQGSPEITDMTNSINDLSEVIRLTHENLEQETKRLSSILSYMTDGVLATNRRGQ 115

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
           I++ N   +K  G   +++        L  +    +   +T +  L +    E       
Sbjct: 116 IITINDMATKQLGVKRDEVQNMSILDLLSISDEYDLRDLITNVPELTIDSQDE------- 168

Query: 534 KEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
              + LSLR+    +   S +       +HD +E  +E+ +              +  F+
Sbjct: 169 -NGEYLSLRVRFALVRRESGFISGLVAVLHDTTEQDKEERE--------------RRLFV 213

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
           + VSHE+RTPLT++  + E +     G L  P   ++        N ++ +V DLL +S+
Sbjct: 214 SNVSHELRTPLTSVKSYLEAL---DEGALSEPVAPDFVKVSLNETNRMMRMVTDLLSLSR 270

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLV---QLYANEKRILIRTSFANNIPRILADLRSVKQ 706
           I++   +L  E  +    ++  ++     +     K+  I   +      +  D   + Q
Sbjct: 271 IDNETSHLEVELTNFTAFITFILNRFDKIKNQDETKKYEIIRDYPITPILVEIDTNKLTQ 330

Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
           +  NI++NAI ++P GG I +S   T   ++IL + D G+G+   +L K    F ++  +
Sbjct: 331 VIDNIMNNAIKYSPDGGTITVSIKTTDE-QLILSIADEGLGIPKQDLPKIFDRFYRVDKA 389

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +     GTGLGL +AK ++  + G  +  S    G+   I+ P
Sbjct: 390 RSRAQGGTGLGLAIAKEIIKQHQGFIWAKSEYGVGSTFTIVLP 432


>gi|315037329|ref|YP_004030897.1| histidine kinase [Lactobacillus amylovorus GRL 1112]
 gi|312275462|gb|ADQ58102.1| putative histidine kinase [Lactobacillus amylovorus GRL 1112]
          Length = 595

 Score =  313 bits (803), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 86/396 (21%), Positives = 170/396 (42%), Gaps = 33/396 (8%)

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
           ++  +           ++    +   + E  +L S+L   SDG+   +R G +   N+  
Sbjct: 212 DELGQLGRAFNTLSVRIERSQEES--DSERRRLDSVLSHMSDGVLATDRHGNVSVVNQMA 269

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
                   ED++ KP    L     S       +++S      +        +     S 
Sbjct: 270 LNFLNVKEEDVINKPIAEVLGLKDTSS-----QDLISSQKEIVVTIDPNTRDEMILHASF 324

Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
            +I +   F S     +HD++E ++ ++               +  F++ VSHE+RTPLT
Sbjct: 325 SLIKRVTGFVSGSVCVLHDVTEQQKNED--------------SQKQFVSNVSHELRTPLT 370

Query: 602 AIIGFSEVIKNQRFGPLGNPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
           ++  + E +     G   +P    ++     +  + ++ ++NDLL +S+++ G   +  E
Sbjct: 371 SLQAYIEALNE---GAWKDPNIAPKFLEVTQQETSRMIRMINDLLSLSRMDRGVSKMDLE 427

Query: 661 PVSLDEAVSEAISLVQLYANEKRI-------LIRTSFANNIPRILADLRSVKQIALNILS 713
            V+L++ V+  ++   +     +         I+    N    +  D   + Q+  NI++
Sbjct: 428 FVNLNDFVNHILNRFDMIVKTDKNNDKKKKYTIKRELGNQALWVEIDTDKMMQVIDNIMN 487

Query: 714 NAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
           NAI ++P G  I +  T   N  VIL + D G+G+   +L K    F ++  ++     G
Sbjct: 488 NAIKYSPDGSVITVRLTQNKN-HVILSISDQGLGIPRKDLGKIFDRFYRVDKARSRAQGG 546

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           TGLGL +AK +V+A+ G+ +  S+  KG+   I  P
Sbjct: 547 TGLGLAIAKEIVEAHHGRIWADSSEGKGSTFYISLP 582


>gi|239995114|ref|ZP_04715638.1| multi-sensor hybrid histidine kinase [Alteromonas macleodii ATCC
           27126]
          Length = 490

 Score =  313 bits (803), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 88/354 (24%), Positives = 154/354 (43%), Gaps = 26/354 (7%)

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
           A  +L GY  E+I+           T       + + ++  +R+ +E   L   K+    
Sbjct: 2   AFEELTGYSREEIIGHNCRSMQGDETSKQTVDQIRKAIA--VREPIETTLLNYKKDGSAF 59

Query: 540 --SLRIIIKKLPFS-SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
              L +   K+    + Y     D+++ +Q +  L  A++ AE+ +  KS FLA +SHEI
Sbjct: 60  YNRLNLTPVKINGEVTHYIGFQQDVTQQRQTEQYLQDAREKAEESARLKSSFLASMSHEI 119

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTP+  I G  +++ +             Y +    S   +L IVND+LD SKIE+G++ 
Sbjct: 120 RTPIHGISGVLQLMASSEL----TEEQKHYLSLAKFSIQGLLHIVNDILDFSKIEAGQLQ 175

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILADLRSVKQIALNILSNA 715
           +   P  + E++    S   +   EK + +   F       +  D    +QI  N+L NA
Sbjct: 176 IEENPFDILESLENLQSQYAIMCQEKGLALHFHFDLQGFHVVQGDDVRFRQILSNLLGNA 235

Query: 716 IHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           + FT SG  I ++T+   N +    ++  V+DTG+G+   +       F Q   S   + 
Sbjct: 236 VKFTDSG-CIEVTTSIQQNADNSLKLLCSVKDTGIGIAQDKQSTIFDVFTQEDLSTTRKF 294

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF-----------PLYDTS 814
            GTGLGL ++K + +   G   + S    G+                 P++ +S
Sbjct: 295 GGTGLGLSISKQLCELMGGDIKLESVKGHGSTFSFTIMLEQADEALLKPVHHSS 348



 Score = 47.3 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/126 (11%), Positives = 32/126 (25%), Gaps = 6/126 (4%)

Query: 101 ELPKTIGNYAFKMIGMR-LCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYV 159
              +  G    ++IG        D       + I   +  +         +  +G+  Y 
Sbjct: 2   AFEELTGYSREEIIGHNCRSMQGDETSKQTVDQIRKAIAVREPIETTLLNYKKDGSAFYN 61

Query: 160 PIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEK 219
              L   P+   N E + + GF                +   +K      +K    +   
Sbjct: 62  R--LNLTPVK-INGEVTHYIGFQ--QDVTQQRQTEQYLQDAREKAEESARLKSSFLASMS 116

Query: 220 EKYDIF 225
            +    
Sbjct: 117 HEIRTP 122


>gi|254784391|ref|YP_003071819.1| PAS domain containing histidine kinase [Teredinibacter turnerae
           T7901]
 gi|237686889|gb|ACR14153.1| PAS domain containing histidine kinase [Teredinibacter turnerae
           T7901]
          Length = 1096

 Score =  313 bits (803), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 116/604 (19%), Positives = 216/604 (35%), Gaps = 35/604 (5%)

Query: 224 IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY 283
                 P  +  + N +         + +       P           Q      + +  
Sbjct: 261 YQQDAPPQSYKALANLIYPDDLPVFSQHNAYALAGEPFSP---RPDEYQMRMRRQDGDYV 317

Query: 284 TKKQYFGTLQ-------NNSKESFEYLSHRNHPSLSAYFDEGENLTPE-----TVDKCPI 331
                  +L+              E +       +     + E    E      ++  P 
Sbjct: 318 WLHIKGESLEWYKNGKPRLRAGVLENIDGLKRLQIQLEASQEELSARETFLASLLNSIPD 377

Query: 332 PFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390
              +   +G     N +F  +   +  + I              L+++          SD
Sbjct: 378 LVTLKDPNGRYLLCNDAFREIVAVEHTEIIGKD---DFDFLPMHLAESLRANDDKALASD 434

Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450
           +     + R   +  + +    +  +     N   +      +  +  +T     ++   
Sbjct: 435 QAT---TVREWLVYASDDKPHLVETVKTRLFNAQIQGHCVLSLGRDITETHRILEEL--- 488

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
             +     E +  G+ I   +  I  TN   ++L G        +    F    T   ++
Sbjct: 489 -DKFHRFAEFSGQGLVITTLDARITYTNPMFTRLTGSDTTPESGRSLRDFYPAETADFLD 547

Query: 511 HYLTEILSLDLRQTLEKITLG-STKEEKLLSLRIIIKKLPFSSCYSLTM-HDISEWKQEK 568
             +  I         E   L         L     +     +  +   +  DISE K+ +
Sbjct: 548 KDVFPITRQRGVWRGELALLNAQGANTTTLHTIFTVMSEYDTPLFLGVIITDISEQKRIE 607

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
            +L  AK+ AE  +  KS FLA +SHEIRTPL AIIG+++++                  
Sbjct: 608 QELEKAKEDAEFANRSKSMFLANMSHEIRTPLNAIIGYAQLL---THDTELRGETHNQIE 664

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
           +I  +GN +L ++ND+LD+SK+ESGK  L      L   ++  + +++  A  K + +  
Sbjct: 665 HIYSAGNHLLGLINDILDLSKMESGKSRLTMTTFDLSVELNTLLGMMEHRAVTKGLRLNA 724

Query: 689 SFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747
                +   + +D + + QI +N+L NAI FT  G ++ +   H ++  + L V DTG G
Sbjct: 725 DLDLPSPALVTSDRQKLAQILINLLGNAIKFTSEG-EVSLQCRHQAD-RIRLVVSDTGEG 782

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           ++  E +    PF Q    +   G GTGLGL L K       G+  + ST  +GT + + 
Sbjct: 783 ISAEEQKYLFTPFVQGVQGE-RVGSGTGLGLILVKNFTALLGGELTLESTAGRGTRVIVS 841

Query: 808 FPLY 811
            PL+
Sbjct: 842 LPLH 845



 Score = 83.5 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/279 (12%), Positives = 86/279 (30%), Gaps = 13/279 (4%)

Query: 313 AYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
              +         +       + +    N  Y +P F     Y+     +    L+ L+ 
Sbjct: 219 RQLNASNRRFNLAMSAGASGIWEWDIEKNQLYVSPVFFTSLGYQQDAPPQSYKALANLIY 278

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
              L   +      L     +      ++   + + +           +  +  +   + 
Sbjct: 279 PDDLPVFSQHNAYALAGEPFSPRPDEYQMRMRRQDGDYVWLHIKGESLEWYKNGKPRLRA 338

Query: 432 GIEPEDVDTRINKRKMEIEVMQ-------LCSILEATSDGIAIINREGIILSTNRAVSKL 484
           G+       +  + ++E    +       L S+L +  D + + +  G  L  N A  ++
Sbjct: 339 GVLENIDGLKRLQIQLEASQEELSARETFLASLLNSIPDLVTLKDPNGRYLLCNDAFREI 398

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
                 +I+ K    FL  +    +     + L+ D   T+ +  L    ++K   +  +
Sbjct: 399 VAVEHTEIIGKDDFDFLPMHLAESLRANDDKALASDQATTV-REWLVYASDDKPHLVETV 457

Query: 545 IKKLPF----SSCYSLTMHDISEWKQEKNKLSHAKKIAE 579
             +L        C      DI+E  +   +L    + AE
Sbjct: 458 KTRLFNAQIQGHCVLSLGRDITETHRILEELDKFHRFAE 496



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 51/530 (9%), Positives = 126/530 (23%), Gaps = 76/530 (14%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI----GDLLKRQ- 140
            W  D       +S     ++G             ++++++ D            L  + 
Sbjct: 239 IWEWDIEKNQLYVSPVFFTSLGYQQDAP-PQSYKALANLIYPDDLPVFSQHNAYALAGEP 297

Query: 141 ---NTWYGKTTLWPIEGTNLYVPI-------DLAALPIYSRNREFSGFRGFGIVHVNRVD 190
                   +  +   +G  +++ I            P   R        G   + +    
Sbjct: 298 FSPRPDEYQMRMRRQDGDYVWLHIKGESLEWYKNGKPRL-RAGVLENIDGLKRLQI--QL 354

Query: 191 NDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS-----SLTE 245
              +      +   + L        +++               +                
Sbjct: 355 EASQEELSARETFLASLLNSIPDLVTLKDPNGRYLLCNDAFREIVAVEHTEIIGKDDFDF 414

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
              H  + L+      L S++++   +   +  +   +  +     L N   +    LS 
Sbjct: 415 LPMHLAESLRANDDKALASDQATTVREWLVYASDDKPHLVETVKTRLFNAQIQGHCVLSL 474

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAG 364
               + +    E  +      +       + +    + Y NP F  LT   +      +G
Sbjct: 475 GRDITETHRILEELDKFHRFAEFSGQGLVITTLDARITYTNPMFTRLTGSDTT---PESG 531

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
                    + +D        + R           L   Q     +L   F    + +  
Sbjct: 532 RSLRDFYPAETADFLDKDVFPITRQRG-VWRGELALLNAQGANTTTLHTIFTVMSEYD-- 588

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
              +    I  +  + +  ++++E                    + E      NR+    
Sbjct: 589 -TPLFLGVIITDISEQKRIEQELEKAKE----------------DAE----FANRS---- 623

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
                              N    +   L  I+      T +    G T  +        
Sbjct: 624 -------------KSMFLANMSHEIRTPLNAIIGYAQLLTHDTELRGETHNQIEHIYSA- 669

Query: 545 IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
                  +     ++DI +  + ++  S         S   +  L  + H
Sbjct: 670 ------GNHLLGLINDILDLSKMESGKSRLTMTTFDLSVELNTLLGMMEH 713



 Score = 47.3 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 26/204 (12%), Positives = 62/204 (30%), Gaps = 20/204 (9%)

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468
             L +              +    +    +  R + R++     +    + A + GI   
Sbjct: 183 THLKLLKRRALGKAVSDLIVVFGILFLWQLSQRSHNRQLNASNRRFNLAMSAGASGIWEW 242

Query: 469 NREGIILSTNRAVSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEILSLD--LRQT 524
           + E   L  +       GY  +   +  K     +  +   V + +    L+ +    + 
Sbjct: 243 DIEKNQLYVSPVFFTSLGYQQDAPPQSYKALANLIYPDDLPVFSQHNAYALAGEPFSPRP 302

Query: 525 LEKITLGSTKEEKLLSLRI-----IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579
            E       ++   + L I        K       +  + +I   K+ + +L  +++   
Sbjct: 303 DEYQMRMRRQDGDYVWLHIKGESLEWYKNGKPRLRAGVLENIDGLKRLQIQLEASQEEL- 361

Query: 580 KESSHKSDFLARVSHEIRTPLTAI 603
              S +  FLA +       L +I
Sbjct: 362 ---SARETFLASL-------LNSI 375


>gi|90424623|ref|YP_532993.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisB18]
 gi|90106637|gb|ABD88674.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisB18]
          Length = 743

 Score =  313 bits (803), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 94/557 (16%), Positives = 199/557 (35%), Gaps = 50/557 (8%)

Query: 275 FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF- 333
               + + +      G  Q +   S  ++      +      +    +            
Sbjct: 67  GRRKDGSIFPMDLSVG--QTDFDHSIAFVGIVRDLTERRRAAQAMRDSERNYRLLVEGVT 124

Query: 334 -----FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388
                 +   G +   N     + +Y + + +      S      +         + L +
Sbjct: 125 DYAIYMLDLDGRITSWNSGAHRIKQYTASEILGK--HFSEFYTQEERQHGVPEHNLKLAK 182

Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
               C     R    +    +      +     N+    +    +  +  + R  ++ + 
Sbjct: 183 RVGRCETKGWR----RRKDGSQFWAHVVIEPLRNESGAPIGFAKLTSDITERRRAEQVIR 238

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
               ++ +++E   DG+ + +  G I   N A  +LFGY VE+++ + F + L+++    
Sbjct: 239 EADERINTLIETVVDGVLLFDAVGKIQIFNAACQRLFGYHVEEVVGQNFKMLLDRSDDVE 298

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQ 566
           ++  L             +   G  K+     + + + +        Y   +HD++E K+
Sbjct: 299 LSSLLGNEHKQAGTV---RELNGLRKDGSSFPMDLSVGEARQDGEVVYVGVIHDLTERKR 355

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
            + +L  A+K+              ++H+    LT I+G +E +  Q       P     
Sbjct: 356 TEQQLVQAQKM-----EIVGQLSGGIAHDFNNLLTVIVGNAEFLGEQL---KTRPDLRSL 407

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
           A+ I R+G    ++   LL  S+    +  L    +  +E ++    L++     + I +
Sbjct: 408 ADDIGRAGERGAELTQGLLAFSR----RQTLRPIEIDCNELLASMHKLLR-RTMREDIEV 462

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT--------------HT 732
           +T F + +  +LAD   ++   +N+  NA      GG++ IST                 
Sbjct: 463 KTDFEDGLRALLADRAQLESAIINLALNAQDAMDGGGRLSISTANVSLDDQYQSAHPEVR 522

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
             E V++ + D G GM    L++  +PF          G+G+GLGL +    V  + G  
Sbjct: 523 PGEYVLIAITDDGEGMPKEVLDRVFEPFFTTK----EVGKGSGLGLSMVYGFVKQSNGHV 578

Query: 793 YIFSTPAKGTLIEIIFP 809
            I+S P  GT + I  P
Sbjct: 579 SIYSEPGLGTTVRIYLP 595



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 54/138 (39%), Gaps = 15/138 (10%)

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
             SI+++ SDGI +++    +   N A  +LFGY   D++ +  T+ +        +  +
Sbjct: 3   FRSIVDSASDGIIVVDASETVRVFNPACERLFGYTAPDVVGQKVTLLMPGQDYLWQHRSV 62

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKL 571
           +                G  K+  +  + + + +  F     +   + D++E ++    +
Sbjct: 63  SS-------------GFGRRKDGSIFPMDLSVGQTDFDHSIAFVGIVRDLTERRRAAQAM 109

Query: 572 SHAKKIAEKESSHKSDFL 589
             +++         +D+ 
Sbjct: 110 RDSERNYRLLVEGVTDYA 127



 Score = 78.1 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 32/361 (8%), Positives = 95/361 (26%), Gaps = 38/361 (10%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +DA   ++  +    +  G  A  ++G ++  +              L + ++   G   
Sbjct: 17  VDASETVRVFNPACERLFGYTAPDVVGQKVTLLMPGQD--------YLWQHRSVSSGFG- 67

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +G+   + + +     +  +  F G     IV             +  ++ +  L 
Sbjct: 68  -RRKDGSIFPMDLSV-GQTDFDHSIAFVG-----IVRDLTERRRAAQAMRDSERNYRLLV 120

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           E    ++    +     +  +     R+K   +S        +   + E+   +      
Sbjct: 121 EGVTDYAIYMLDLDGRITSWNS-GAHRIKQYTASEILGKHFSEFYTQEERQHGVPEHNLK 179

Query: 269 LPEQED-------FHTINLNQYTKKQYFGTLQNNSKESFE----YLSHRNHPSLSAYFDE 317
           L ++             + +Q+        L+N S                        E
Sbjct: 180 LAKRVGRCETKGWRRRKDGSQFWAHVVIEPLRNESGAPIGFAKLTSDITERRRAEQVIRE 239

Query: 318 GENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIA---------GGLS 367
            +      ++       ++   G +   N +   L  Y   + +                
Sbjct: 240 ADERINTLIETVVDGVLLFDAVGKIQIFNAACQRLFGYHVEEVVGQNFKMLLDRSDDVEL 299

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
           + L   +      ++ +   R D +       +   + + E           +  +  + 
Sbjct: 300 SSLLGNEHKQAGTVRELNGLRKDGSSFPMDLSVGEARQDGEVVYVGVIHDLTERKRTEQQ 359

Query: 428 M 428
           +
Sbjct: 360 L 360



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/404 (9%), Positives = 107/404 (26%), Gaps = 35/404 (8%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + +D  G +   +    +     A +++G    +              +L   +     
Sbjct: 128 IYMLDLDGRITSWNSGAHRIKQYTASEILGKHFSEFYTQEERQHGVPEHNLKLAKRVGRC 187

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +T  W            +   P+ + +    GF    +            + +  D++ +
Sbjct: 188 ETKGWRRRKDGSQFWAHVVIEPLRNESGAPIGFAK--LTSDITERRRAEQVIREADERIN 245

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSP---PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
            L E       +      I    +         ++  V    +    + D ++       
Sbjct: 246 TLIETVVDGVLLFDAVGKIQIFNAACQRLFGYHVEEVVGQNFKMLLDRSDDVELSSLLGN 305

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
             +++    + +    + + +      G  + + +  +  + H             +   
Sbjct: 306 EHKQAGTVRELNGLRKDGSSFPMDLSVGEARQDGEVVYVGVIHDLTERKRTEQQLVQAQK 365

Query: 323 PETVDKCPIPFFVY--SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
            E V +          +   +   N  FL        + ++    L +L D    +    
Sbjct: 366 MEIVGQLSGGIAHDFNNLLTVIVGNAEFL-------GEQLKTRPDLRSLADDIGRAGERG 418

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
            +      +     +    L  I+ +      +  +         E++       + +  
Sbjct: 419 AELTQGLLA----FSRRQTLRPIEIDCNE--LLASMHKLLRRTMREDIEVKTDFEDGL-- 470

Query: 441 RINKRKMEIEVMQLC-SILE---ATSDGIAIINREGI--ILSTN 478
               R +  +  QL  +I+       D +   +  G   I + N
Sbjct: 471 ----RALLADRAQLESAIINLALNAQDAM---DGGGRLSISTAN 507


>gi|73537945|ref|YP_298312.1| PAS/PAC sensor hybrid histidine kinase [Ralstonia eutropha JMP134]
 gi|72121282|gb|AAZ63468.1| PAS/PAC sensor hybrid histidine kinase [Ralstonia eutropha JMP134]
          Length = 639

 Score =  313 bits (803), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 88/516 (17%), Positives = 182/516 (35%), Gaps = 33/516 (6%)

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPI--PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIA 363
              PS      E  ++    V+       F + + G +   N     +  Y++ + I   
Sbjct: 4   SGRPSSPRPATERHDIFRTLVETISDYAIFLLDTDGTITSWNRGAQRIKGYEASEIIG-- 61

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
              S       ++     K + L R          +   ++ +     A   +     N+
Sbjct: 62  SHFSRFYPEDSIARGWPQKELELARRHGR---VEDKGWRVRKDGTRFWA-NVVITALHNE 117

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNRAVS 482
             E +    I  +  D   +  K+         ++    D  I +++  G ++S N   +
Sbjct: 118 AGEIIGFAKITRDMTDQMQDAAKLMESEETFRLLVLNVKDYAIFMLDPHGNVVSWNAGAA 177

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSV--MNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
           ++ GY   +I+ + F+ F      +       +          +++       K+  L  
Sbjct: 178 QIKGYRSSEIVGRHFSTFYLPEDVAAGKPERLIQRAREHG---SVQDEGWRMRKDGSLFW 234

Query: 541 LRIIIKKLPFS----SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
             + +  +         ++    D+SE K+ +          E  +    +FLA ++HE+
Sbjct: 235 ASVTLTAIYDEHRQLRGFAKVTRDMSERKRLEE--------VEASARRMKEFLAMLAHEL 286

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           R PL  +   + +++     P            + R    +  +V+DLLD+ +I +GK+ 
Sbjct: 287 RNPLAPMYSATSIMER---APDDLSLVKANLGIVGRQLRHLTRLVDDLLDVGRIAAGKLE 343

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716
           L    + + E ++ AI         +   I     +   ++  DL  + Q+  N+L NA 
Sbjct: 344 LRRSVIPIREVIAAAIEGSMPAIEARSQRIEAELDDADFQVFGDLTRLAQVLQNLLINAS 403

Query: 717 HFTPSGGQIIISTTHTSNEEV-ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
            F+P    I +      N  +  L + D G G+    L +    F Q     Q    G G
Sbjct: 404 KFSPESTTITLRCGL--NGRIGQLTITDQGCGIAPENLSEVFNLFVQGGPPGQTSSNGLG 461

Query: 776 LGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFPL 810
           +GL L +++++ + G     S     G    I  P+
Sbjct: 462 IGLSLCRSIIELHEGSISAASQGLGLGCTFSIRLPI 497



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 46/375 (12%), Positives = 101/375 (26%), Gaps = 32/375 (8%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + +D  G +   +    +  G  A ++IG           I       +L   +     
Sbjct: 32  IFLLDTDGTITSWNRGAQRIKGYEASEIIGSHFSRFYPEDSIARGWPQKELELARRHGRV 91

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +   W +         ++    +++   E  GF    I           A     ++ F 
Sbjct: 92  EDKGWRVRKDGTRFWANVVITALHNEAGEIIGFAK--ITRDMTDQMQDAAKLMESEETFR 149

Query: 206 HLH-EIKKGHSSVEKEKYDIFSQQSPPPHL---RMKNKVSSLTEYYAHKDDVLKTEKYPL 261
            L   +K     +     ++ S  +    +   R    V      +   +DV   +   L
Sbjct: 150 LLVLNVKDYAIFMLDPHGNVVSWNAGAAQIKGYRSSEIVGRHFSTFYLPEDVAAGKPERL 209

Query: 262 --LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
                E  S+ ++      + + +        + +  ++   +       S     +E E
Sbjct: 210 IQRAREHGSVQDEGWRMRKDGSLFWASVTLTAIYDEHRQLRGFAKVTRDMSERKRLEEVE 269

Query: 320 NLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDI----------EIAGGLSTL 369
                  +        +   N      S   + +    D                 L+ L
Sbjct: 270 ASARRMKEFL--AMLAHELRNPLAPMYSATSIMERAPDDLSLVKANLGIVGRQLRHLTRL 327

Query: 370 LDAPKLSDNNAIKPVMLYRS------------DRTCIAASARLHTIQWNRENSLAMTFIP 417
           +D        A   + L RS            + +  A  AR   I+   +++    F  
Sbjct: 328 VDDLLDVGRIAAGKLELRRSVIPIREVIAAAIEGSMPAIEARSQRIEAELDDADFQVFGD 387

Query: 418 FEKANQFPENMPQNG 432
             +  Q  +N+  N 
Sbjct: 388 LTRLAQVLQNLLINA 402



 Score = 70.4 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/263 (10%), Positives = 73/263 (27%), Gaps = 21/263 (7%)

Query: 51  QSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYA 110
                D   +       ++SE TF    +       + +D HG +   +    +  G  +
Sbjct: 125 AKITRDMTDQMQDAAKLMESEETFRLLVLNVKDYAIFMLDPHGNVVSWNAGAAQIKGYRS 184

Query: 111 FKMIGMRLCDVSDILHID---PNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALP 167
            +++G           +    P   I    +   +   +      +G+  +  + L A  
Sbjct: 185 SEIVGRHFSTFYLPEDVAAGKPERLIQRARE-HGSVQDEGWRMRKDGSLFWASVTLTA-- 241

Query: 168 IYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK-----------KFSHLHEIKKGHSS 216
           IY  +R+  GF    +            +     +             + L  +    S 
Sbjct: 242 IYDEHRQLRGFAK--VTRDMSERKRLEEVEASARRMKEFLAMLAHELRNPLAPMYSATSI 299

Query: 217 VEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFH 276
           +E+   D+   ++    +  + +  +           +   K  L  S       +    
Sbjct: 300 MERAPDDLSLVKANLGIVGRQLRHLTRLVDDLLDVGRIAAGKLELRRSVIPIR--EVIAA 357

Query: 277 TINLNQYTKKQYFGTLQNNSKES 299
            I  +    +     ++    ++
Sbjct: 358 AIEGSMPAIEARSQRIEAELDDA 380


>gi|320160070|ref|YP_004173294.1| two-component sensor histidine kinase [Anaerolinea thermophila UNI-1]
 gi|319993923|dbj|BAJ62694.1| two-component sensor histidine kinase [Anaerolinea thermophila UNI-1]
          Length = 2319

 Score =  313 bits (803), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 111/617 (17%), Positives = 230/617 (37%), Gaps = 43/617 (6%)

Query: 211  KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270
            +   + +E  +           + R+  +  SLTE+   + +   +E      + ++ L 
Sbjct: 1733 RFAVAEIELARTVANQAAIAIQNARLFEETRSLTEFLEKRVEERTSELRREHQNSQTLLR 1792

Query: 271  EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330
               +  T         +  G + ++   +            S    E       T +   
Sbjct: 1793 VISELSTSLDMDLVLNRALGVINDSLGSNESLAFMLQSNGKSFRAGE---NLVATWESAG 1849

Query: 331  IPFFVYSHGNLFYA-NPSFLLLTKYKSVDDI----EIAGGLSTLLDAPKLSDNNAIKPVM 385
                +     +  A N   LLL+   +        E      ++L  P +     +  ++
Sbjct: 1850 RKVALEREITMLVAKNRKALLLSDVLADSRWQIPAEETPTYRSVLAVPIIMGEEVLGALL 1909

Query: 386  LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
            L   +      +                T      A    E       + E +   + ++
Sbjct: 1910 LLHREVNYFHENQI---------PLAEATARQIGIAINNAELFNLIRDQSEHLGKMLREQ 1960

Query: 446  KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            ++E       ++LEA +DG+ + + EG I   N +  ++     ++++ +    F     
Sbjct: 1961 QIEASRS--RALLEAIADGVLVTDGEGKITLFNASAERILDLRAQEVIGRSLEQFSGLFG 2018

Query: 506  PSVMNHYLTEILSLDLRQTLEKITLGSTKE---EKLLSLRIIIKKLPFS-SCYSLTMHDI 561
             S  N   T        ++          +    K++++ +                 DI
Sbjct: 2019 RSGANWVRTIRNWSKEPKSYGGEFFADQFDLDNGKVIAVHLAPVFWRSQFLGTVSIFRDI 2078

Query: 562  SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
            +   Q                  KS+F+A VSHE+RTP+T+I G+ E++     G L  P
Sbjct: 2079 THEVQV--------------DRMKSEFVANVSHELRTPMTSIKGYVEIMLLGATGELT-P 2123

Query: 622  RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV--QLYA 679
            +   +   +  +   +  +VNDLLD+S+IESGK+ L+   ++L     E +  V  +   
Sbjct: 2124 QQRHFLEIVKNNTERLGVLVNDLLDLSRIESGKITLNMTDLNLRLLAEEVMEYVSRRSQE 2183

Query: 680  NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
             EK +        N+P +  D   ++Q+  N++ N  ++TP  G + +     ++ EV +
Sbjct: 2184 EEKPMNFSLEVEENLPTVRGDEERIRQVITNLVVNGYNYTPENGHVWVRI-FRNDGEVQV 2242

Query: 740  RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-- 797
             V+D G+G++  + E+  + F +  +   ++  GTGLGL +AK +V  + G+ +  S+  
Sbjct: 2243 DVQDDGIGISIEDQERIFERFYRGEDPLVLKTAGTGLGLAVAKTIVTMHNGRIWFKSSGI 2302

Query: 798  PAKGTLIEIIFPLYDTS 814
              +G+      PL    
Sbjct: 2303 RGEGSTFSFTLPLNPVE 2319



 Score = 38.5 bits (88), Expect = 4.5,   Method: Composition-based stats.
 Identities = 9/62 (14%), Positives = 20/62 (32%), Gaps = 4/62 (6%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
             D  G +   +    + +   A ++IG  L   S +      N +    +    W  +  
Sbjct: 1981 TDGEGKITLFNASAERILDLRAQEVIGRSLEQFSGLFGRSGANWV----RTIRNWSKEPK 2036

Query: 149  LW 150
             +
Sbjct: 2037 SY 2038


>gi|295703363|ref|YP_003596438.1| two-component sensor histidine kinase KinE [Bacillus megaterium DSM
           319]
 gi|294801022|gb|ADF38088.1| two-component sensor histidine kinase KinE [Bacillus megaterium DSM
           319]
          Length = 726

 Score =  313 bits (803), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 105/727 (14%), Positives = 230/727 (31%), Gaps = 53/727 (7%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D +  +   +E           +++  ++ D       D        L  ++ +  +  +
Sbjct: 45  DEYFQVINANESACGLFEKTKDELLTYQMKDFLMYFPYDMIEAYYPALLEESYFKYEGAM 104

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIV--HVNRVDNDPRALGKRLDKKFSHL 207
               G   +V                S   G  +                      F  +
Sbjct: 105 TLRSGMMKHVEFTSHKH---------SHMSGIIVCTFRDITQHKMMENERFISHHMFMDV 155

Query: 208 HEIKKGHSSVEKEKYDIFSQQSP--PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
                    +      +              + ++ + T     +       K    T  
Sbjct: 156 FNEAVDGIVIFDRTGQLIDANPSFCERLNYTRAQLLTKTLEELVEPTYHYKVKKLWRTLH 215

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL-SAYFDEGENLTPE 324
           +      E    +     T  ++  T    S+     +       L        E     
Sbjct: 216 QEGKTSGELPIRLENGDVTFFEFTTTANIYSQYYMSIMRDVTEKRLMEQQLLRSEKNFRA 275

Query: 325 TVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
             +       ++   G +  AN +     +            L+ L+ +   +  +    
Sbjct: 276 IFENAIEAILIWRDDGEILNANLASSRTFELP----------LNKLIGSNLYTFIDTKSF 325

Query: 384 VMLYRSDRTCIAASARLH-TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             L            R              + F   +   +         I     +   
Sbjct: 326 SALKVLQTFQTKGEIRNQLPFYMPNGEIKQLEFTGKKGIIEGDH----LTIFRNISERTK 381

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            ++++     +   I   + DG+ + + +  I+  N ++  +     E+I       F+ 
Sbjct: 382 IEQELRNNEEKFRQIFNGSIDGLVLWDGKRNIIDVNSSLCDILELSKEEICAHSMEDFIS 441

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
                 +  +   I         E      T  EK+ ++    KK      Y   + D++
Sbjct: 442 SANLDAVIEHKETIEQKGEA---EGEITYVTGNEKVKNIEFSTKKDILPGLYMTLLRDVT 498

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E  Q + ++  +  +            A ++HEIR P+TA+ GF +++++          
Sbjct: 499 ERNQMQEQIRKSDTL-----QVVGQLAAGIAHEIRNPMTALKGFVQLLESSI-----QED 548

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
           +  Y + I      +  I+ + L ++K ++    + FE  +L   V E I L+   A  +
Sbjct: 549 HSLYFDIIKSELKRIETIITEFLVLAKPQA----VKFEKKNLAAVVKETIDLLNAQALLE 604

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
            I    S +  +P +  +   +KQ+ +N++ NAI  T +GG+II+    T    V + +R
Sbjct: 605 NIQFELSVSPQLPMVYCEPNQIKQVLINVIKNAIEVTSNGGRIIVEVYSTEPHYVTVSIR 664

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G GM    +++  +PF         + +GTGLGL ++  +++ + G+  + S   +GT
Sbjct: 665 DQGDGMPEERIKRLGEPFYTT------KEKGTGLGLMVSYKIIEEHKGRIEVESKIGEGT 718

Query: 803 LIEIIFP 809
              +I P
Sbjct: 719 AFHVILP 725



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/282 (9%), Positives = 62/282 (21%), Gaps = 35/282 (12%)

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIE------- 361
                            +       V+     +  AN S   L +    + +        
Sbjct: 18  EAEQKQQGELQQLRAIFNDVLDAIVVFDEYFQVINANESACGLFEKTKDELLTYQMKDFL 77

Query: 362 ---IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
                  +        L ++       +              H         +       
Sbjct: 78  MYFPYDMIEAYY-PALLEESYFKYEGAMTLRSGMMKHVEFTSHKHSHMSGIIVC------ 130

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
                            +    ++ + +  I       +     DGI I +R G ++  N
Sbjct: 131 --------------TFRDITQHKMMENERFISHHMFMDVFNEAVDGIVIFDRTGQLIDAN 176

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
            +  +   Y    +L K     +E      +      +                 +   +
Sbjct: 177 PSFCERLNYTRAQLLTKTLEELVEPTYHYKVKKLWRTLHQEGKTSG---ELPIRLENGDV 233

Query: 539 LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
                      +S  Y   M D++E +  + +L  ++K    
Sbjct: 234 TFFEFTTTANIYSQYYMSIMRDVTEKRLMEQQLLRSEKNFRA 275



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 53/152 (34%), Gaps = 4/152 (2%)

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
               +      T   ++K + E+ QL +I     D I + +    +++ N +   LF   
Sbjct: 5   GAMSMSQHRELTSEAEQKQQGELQQLRAIFNDVLDAIVVFDEYFQVINANESACGLFEKT 64

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            +++L      FL      ++  Y   +L        +     + +   +  +     K 
Sbjct: 65  KDELLTYQMKDFLMYFPYDMIEAYYPALLE---ESYFKYEGAMTLRSGMMKHVEFTSHKH 121

Query: 549 PFSSCYSL-TMHDISEWKQEKNKLSHAKKIAE 579
              S   + T  DI++ K  +N+   +  +  
Sbjct: 122 SHMSGIIVCTFRDITQHKMMENERFISHHMFM 153


>gi|150017295|ref|YP_001309549.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           beijerinckii NCIMB 8052]
 gi|149903760|gb|ABR34593.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           beijerinckii NCIMB 8052]
          Length = 625

 Score =  313 bits (803), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 91/377 (24%), Positives = 175/377 (46%), Gaps = 16/377 (4%)

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP-VEDILRKPFTVF--LEQN 504
           E +  QL  IL++  +G+ I++    IL  N+ V KL      + IL +       + ++
Sbjct: 218 EKKKGQLLYILDSIYEGVFILDTNYKILFVNKGVEKLLNINNFKSILGRDLFEIGIVHKD 277

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDIS 562
              ++ +   ++L  ++   + +  +    +  ++ + I    + +         + DIS
Sbjct: 278 YRDIILNRFEKVLKHNISVPIIEEKMIQ-FDGNIIPVNIYSGAIEYEGNPCILSVIRDIS 336

Query: 563 EWKQEKNKLSHAKKIAEKESSH------KSDFLARVSHEIRTPLTAIIGFSEVIK---NQ 613
           E K+ +N     ++ +            K++F A +SHE RTPL  ++   +++      
Sbjct: 337 EHKKSENLRLKIQEQSRLLDKAAEYDKLKTEFFANLSHEFRTPLNVMLSTLQLLNLIGAN 396

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
           +       +  +Y N + ++   +L +VN+L+DI+KI++    L  +  ++   + +   
Sbjct: 397 KTNTDSKDKISKYYNIMKQNCYRLLRLVNNLIDITKIDAEYFKLSLKNENIISTIEDITL 456

Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
            V  YA  K + I          +  D   +++I LN+LSNAI FT SGG I ++     
Sbjct: 457 SVTDYAKNKGLDIIFDTNVEEKLMACDADKIERIMLNLLSNAIKFTSSGGSIFVNI-LDK 515

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
           +  +I+ VRDTGVG+   +     K F Q+  S   + EG+G+GL L K++V+ + G   
Sbjct: 516 DSSIIVSVRDTGVGIPKDKQLSIFKRFVQVDKSLSRKREGSGIGLSLVKSLVELHNGTIK 575

Query: 794 IFSTPAKGTLIEIIFPL 810
           I S   KG+   I  P+
Sbjct: 576 INSEYGKGSEFIIELPV 592


>gi|328951841|ref|YP_004369175.1| multi-sensor hybrid histidine kinase [Desulfobacca acetoxidans DSM
           11109]
 gi|328452165|gb|AEB07994.1| multi-sensor hybrid histidine kinase [Desulfobacca acetoxidans DSM
           11109]
          Length = 1121

 Score =  313 bits (803), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 109/580 (18%), Positives = 203/580 (35%), Gaps = 77/580 (13%)

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKS 356
               +L             E +    + +D  P     +   G +   N +   +T  ++
Sbjct: 144 VYGAFLDITERKEAEEAVRESKRQFQDIIDFLPDATLVIDREGKVIAWNRAIEAMTGVQA 203

Query: 357 VDDIEIAGGLSTL-LDAPKLS---------DNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
            D +        L     +           +                +     +  ++  
Sbjct: 204 QDILGKGNYEYALPFYGERRPILIDFVFAKEEEFRSRYAQVSRRGEILCGETYVPQLKAG 263

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
                 +        +          I  ++ + +  +  +  +   L ++ E T   I 
Sbjct: 264 GAY---LIATAGGLYDSSDHLTGAIEIIRDNTERKHMEEALYRQKEYLAALNETTLGLIN 320

Query: 467 IINREGIILSTNRAVSKLFGYPVEDIL-------------RKPFTVFLEQNTPSVMNHYL 513
            +N   ++ +      +L G P   I                     L      +     
Sbjct: 321 RLNLHDLLQTLICRAGQLLGTPHGFIHLVNPERMILECRVGMGIFEKLIGACLKLGQGLS 380

Query: 514 TEILSLDLRQTLE----KITLGSTKEEKLLSLRIIIK-KLPFSSCYSLTM-------HDI 561
            ++        +E          T      S+R+I+   L   S  +  +        D 
Sbjct: 381 GQVWQTGQSLLIENYQDWGGRADTPGLDYQSIRMIMGIPLKSGSQVTGVLGLACHRETDQ 440

Query: 562 S---EWK-----------------QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
           +   E K                 +   + S A+  AE  +  KS FLA +SHEIRTP+ 
Sbjct: 441 TFSDEEKALLERFGELASLALDNAKLYAEASEARTAAEAANEAKSTFLATMSHEIRTPMN 500

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
            +IG + ++ +       N    E+   I  SG  +L I+ND+LD SKIE+GKM L  +P
Sbjct: 501 GVIGMTNLLLDTPL----NEEQREFCETIRGSGEALLTIINDILDFSKIEAGKMELEHQP 556

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTP 720
             L E +  A+ L+   A +K + +       +P  I  D+  ++QI LN+L+NA+ FT 
Sbjct: 557 FDLRECLESALDLIVTPAQQKGLELVYHVDKQVPATIAGDVTRLRQILLNLLNNAVKFTE 616

Query: 721 SGGQIIISTTHTSNEE----------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
            G +I ++       +          +   V D+G+G+    L +  + F QI  S   +
Sbjct: 617 QG-EISLTVRGEDGPDAAALPPGSMLLRFSVADSGIGIPPDRLNRMFQSFSQIDASTTRK 675

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFST--PAKGTLIEIIF 808
             GTGLGL ++K + +   G+ ++ S   P KG+   ++ 
Sbjct: 676 YGGTGLGLAISKRLSEMMGGRLWVESKGVPGKGSTFHLLI 715



 Score =  101 bits (251), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 46/341 (13%), Positives = 98/341 (28%), Gaps = 28/341 (8%)

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTK 353
           +          R   +  A     E      +   P  FF      ++ + +    +LT 
Sbjct: 13  DELNRLRQEVTRLRAASEAAVPPRETSYLLLLKNLPNVFFKGYMDWSVDFIDNKIEVLTG 72

Query: 354 YKSVD-DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
           Y   + D      L   +  P+  D    + +   ++D+  I    R + I+      L 
Sbjct: 73  YPKAEFDSRRIKWLD--IVVPEDLDRIQKELITALKTDKAYI----REYRIRHRSGKVLW 126

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG 472
           +        +         G   +  + +  +  +     Q   I++   D   +I+REG
Sbjct: 127 IQESSQIMCHSQSGFEFVYGAFLDITERKEAEEAVRESKRQFQDIIDFLPDATLVIDREG 186

Query: 473 IILSTNRAVSKLFGYPVEDILR--------------KPFTVFLEQNTPSVMNHYLTEILS 518
            +++ NRA+  + G   +DIL               +P  +               ++  
Sbjct: 187 KVIAWNRAIEAMTGVQAQDILGKGNYEYALPFYGERRPILIDFVFAKEEEFRSRYAQVSR 246

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKK 576
                  E            L                    + D +E K  +  L   K+
Sbjct: 247 RGEILCGETYVPQLKAGGAYLIATAGGLYDSSDHLTGAIEIIRDNTERKHMEEALYRQKE 306

Query: 577 IAEKESSHKSDFLARVS-HEIRTPLTAIIGFSEVIKNQRFG 616
                +      + R++ H++   L  +I  +  +     G
Sbjct: 307 YLAALNETTLGLINRLNLHDL---LQTLICRAGQLLGTPHG 344



 Score = 45.4 bits (106), Expect = 0.038,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 43/140 (30%), Gaps = 15/140 (10%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD-LLKRQNTWYGKT 147
           ID  G +   +  +    G  A  ++G    + +   + +    + D +  ++  +  + 
Sbjct: 182 IDREGKVIAWNRAIEAMTGVQAQDILGKGNYEYALPFYGERRPILIDFVFAKEEEFRSRY 241

Query: 148 TLWPIEGTNL----YVPIDLAALP--------IYSRNREFSGFRGFGIVHVNRVDNDPRA 195
                 G  L    YVP   A           +Y  +   +G     I+  N        
Sbjct: 242 AQVSRRGEILCGETYVPQLKAGGAYLIATAGGLYDSSDHLTGA--IEIIRDNTERKHMEE 299

Query: 196 LGKRLDKKFSHLHEIKKGHS 215
              R  +  + L+E   G  
Sbjct: 300 ALYRQKEYLAALNETTLGLI 319


>gi|86608001|ref|YP_476763.1| sensory box histidine kinase/response regulator [Synechococcus sp.
            JA-2-3B'a(2-13)]
 gi|86556543|gb|ABD01500.1| sensory box histidine kinase/response regulator [Synechococcus sp.
            JA-2-3B'a(2-13)]
          Length = 1526

 Score =  313 bits (803), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 121/697 (17%), Positives = 228/697 (32%), Gaps = 68/697 (9%)

Query: 181  FGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH------L 234
            F I        +     K+     + + +       V   +  I                
Sbjct: 385  FLIRRETAEREEAERSLKQERDFTNAVIDTAGALVVVMDPEGRILRFNRAAEQLSGYSLA 444

Query: 235  RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL--PEQEDFHTINLNQYTKKQYFGTL 292
             +KN++         +D     + +  L    S      +  + T              L
Sbjct: 445  EVKNRLLWDLGLIPPEDVPGVKQAFEQLKGNHSLFLNRHENFWRTKQGALRLISWSNTAL 504

Query: 293  QNNSKES----FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPS 347
             N + E        +   +         E E    +  +        V + G+  Y N +
Sbjct: 505  INAAGEVEFVMGTGIDITDRKLAELALKESEERYRDLFENATDLIQSVDAEGHFLYVNRA 564

Query: 348  FLLLTKYKSVD-------DIEIAGGLST---LLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397
            +     Y           DI           L       +           +    +   
Sbjct: 565  WKETLGYDEAQVYQMTLFDILHPDCREHCQALFQKLLAGEKLERVETAFLTATGETVWLE 624

Query: 398  ARLHTIQWNR---------ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
              +     +           N         E   Q         +  +  ++      +E
Sbjct: 625  GNVSCRFEDGVMVATRGIFRNITEQKKAAEELERQNRRAQLLANLSLKIRESLDIAEILE 684

Query: 449  IEVMQLCSILEATSDGIAIINREGIILSTNRAVS----KLFGYPVEDILRKP-------- 496
              V ++ ++L+A    +     +G  + +N         L G  +ED   +         
Sbjct: 685  TAVTEIQALLKADRVLVYRFQPDGSGIISNEKTQPGIPSLLGEVIEDPCFQEKYAQLYSQ 744

Query: 497  -----FTVFLEQNTPSVMNHYLTEILSLD---LRQTLEKITLGS------TKEEKLLSLR 542
                  +    +         L ++       +   LE+   G       +   +     
Sbjct: 745  GRVRVVSDVESEGLEPCYLELLQKMQVRANMVVPLFLEQQLWGLLLAHQCSGPRQWQPFE 804

Query: 543  III-KKLPFSSCYSLTMHDISEW-KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
            + +  +L      +LT   + E  ++   +L  A+K AE+ +  KS FLA +SHEIRTP+
Sbjct: 805  MELLSQLANQIGIALTQAALLERERKRSLELEQARKAAEQAAQAKSSFLATMSHEIRTPM 864

Query: 601  TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
             A++G + ++         N    ++   I  SG+ +L ++ND+LD SK+E+G+M L   
Sbjct: 865  NAVLGMTGLLLETPL----NAEQRDFVETIRISGDALLTLINDILDFSKLEAGEMELEIL 920

Query: 661  PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFT 719
               L   + E   L    A+ K + +       +PR +  D   ++QI  N++SNAI FT
Sbjct: 921  DFDLRSCLEEVADLFAPTAHAKGLELAVLMPPEVPRYLRGDASRLRQILNNLVSNAIKFT 980

Query: 720  PSGGQII---ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
              G  +I   +     ++  + L VRDTG+G+      K  +PF Q+  S   +  GTGL
Sbjct: 981  HQGEVVIQAEVLQETATHAHLKLSVRDTGIGIPAAAQSKLFQPFSQVDASTTRKYGGTGL 1040

Query: 777  GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
            GL + K + +   G   + S   +G+   +   L   
Sbjct: 1041 GLAICKQLTELMGGTISLQSQEGQGSTFSVELTLERQ 1077



 Score =  124 bits (312), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 50/467 (10%), Positives = 118/467 (25%), Gaps = 33/467 (7%)

Query: 138 KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG 197
           + +    GK      +          +   I +R R         ++    VDN  +   
Sbjct: 240 ETRAAEAGKRGYLLTDNPRYLGEYQDSLEAISTRLR---------LLQELTVDNPLQQER 290

Query: 198 KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257
            +  +                +E+  + + Q           V  + +            
Sbjct: 291 LKRLELLLEQRLRVIQDLIRLREQEGLLATQEALESSEGPRLVEQIADLILVLQQEENRL 350

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
                   E                        ++                        +
Sbjct: 351 LQQRSQ--EFQFAWVRTNLIAFGGLIFTYLVLASVY-----FLIRRETAEREEAERSLKQ 403

Query: 318 GENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
             + T   +D       V    G +   N +   L+ Y   +          L+    + 
Sbjct: 404 ERDFTNAVIDTAGALVVVMDPEGRILRFNRAAEQLSGYSLAEVKNRLLWDLGLIPPEDVP 463

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
                +     + + +                    +++      N   E     G   +
Sbjct: 464 G--VKQAFEQLKGNHSLFLNRHENFWRTKQGA-LRLISWSNTALINAAGEVEFVMGTGID 520

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             D ++ +  ++    +   + E  +D I  ++ EG  L  NRA  +  GY    + +  
Sbjct: 521 ITDRKLAELALKESEERYRDLFENATDLIQSVDAEGHFLYVNRAWKETLGYDEAQVYQMT 580

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556
               L  +          ++L+ +  + +   T   T   + + L   +           
Sbjct: 581 LFDILHPDCREHCQALFQKLLAGEKLERV--ETAFLTATGETVWLEGNVSCRFEDGVMVA 638

Query: 557 ---TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
                 +I+E K+   +L        +  + ++  LA +S +IR  L
Sbjct: 639 TRGIFRNITEQKKAAEEL--------ERQNRRAQLLANLSLKIRESL 677



 Score = 55.4 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/250 (12%), Positives = 72/250 (28%), Gaps = 10/250 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147
           +DA G+   ++    +T+G    ++  M L D+      +        LL  +     +T
Sbjct: 552 VDAEGHFLYVNRAWKETLGYDEAQVYQMTLFDILHPDCREHCQALFQKLLAGEKLERVET 611

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                 G  +++  +++       +      RG  I              +R +++   L
Sbjct: 612 AFLTATGETVWLEGNVSC---RFEDGVMVATRG--IFRNITEQKKAAEELERQNRRAQLL 666

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
             +             + +  +    L   ++V            +   +  P + S   
Sbjct: 667 ANLSLKIRESLDIAEILETAVTEIQALLKADRVLVYRFQPDGSGIISNEKTQPGIPSLLG 726

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
            + E   F       Y++    G ++  S    E L       L         + P  ++
Sbjct: 727 EVIEDPCFQEKYAQLYSQ----GRVRVVSDVESEGLEPCYLELLQKMQVRANMVVPLFLE 782

Query: 328 KCPIPFFVYS 337
           +      +  
Sbjct: 783 QQLWGLLLAH 792



 Score = 51.2 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/147 (11%), Positives = 38/147 (25%), Gaps = 7/147 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCD--VSDILHIDPNNHIGDLLKRQNT--WY 144
           +D  G +   +    +  G    ++    L D  +     +       + LK  ++    
Sbjct: 422 MDPEGRILRFNRAAEQLSGYSLAEVKNRLLWDLGLIPPEDVPGVKQAFEQLKGNHSLFLN 481

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
                W  +   L + I  +   + +   E     G GI              K  ++++
Sbjct: 482 RHENFWRTKQGALRL-ISWSNTALINAAGEVEFVMGTGI--DITDRKLAELALKESEERY 538

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPP 231
             L E           +          
Sbjct: 539 RDLFENATDLIQSVDAEGHFLYVNRAW 565


>gi|303313435|ref|XP_003066729.1| Histidine Kinase A (phosphoacceptor) domain containing protein
           [Coccidioides posadasii C735 delta SOWgp]
 gi|240106391|gb|EER24584.1| Histidine Kinase A (phosphoacceptor) domain containing protein
           [Coccidioides posadasii C735 delta SOWgp]
          Length = 762

 Score =  313 bits (803), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 106/529 (20%), Positives = 207/529 (39%), Gaps = 26/529 (4%)

Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFL 349
           T ++  +    + +           ++      +     PIP  +      +   + S L
Sbjct: 98  TAEDKVESHNTFTAAPETAEAKPSLNDSNRNLCKVFALTPIPTIILDSDLRIIDISNSHL 157

Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
            L K    + +            P          +    S +           +    ++
Sbjct: 158 ELFKLGLHECLGRRIFDMEPSKIPVPDVAILDSVINTAISTQNVQVMHDVEDYLS---QS 214

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD-GIAII 468
              M   P  +AN+    + +     +                    +++  SD  I ++
Sbjct: 215 VFRMRATPIFEANRLLYVVLEALNITDPYLKSKIHENAYAS-ETYRVLVDTVSDYAIFML 273

Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528
           + +G I + N   + L GY  E++L K F++F  ++  +        +LSL   +  ++ 
Sbjct: 274 DTKGYITTWNAGAAILKGYTAEEVLGKHFSMFYGEDDCAQGKPRKELVLSLHDGKVEDEG 333

Query: 529 TLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
                K+       + I  +        +   + D++E K  + +L       E+ S  K
Sbjct: 334 WRYR-KDGSRFWANVTITPVHQFGHHVGFVKVVRDLTERKAAETRLI---AAYEETSKLK 389

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
           SDFLA +SHEIRTP+  ++G   ++ +       +    EYA  I+ S +++L ++ND+L
Sbjct: 390 SDFLANMSHEIRTPMNGVLGALSLLNSTAL----SQNQREYATIIEESTSVLLRLINDIL 445

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSV 704
           D SK+ SG  +L  +  S++  V+  I        E  I +++      P  +  D    
Sbjct: 446 DYSKLSSGSFSLTTDVFSVESIVNSVIQNCPPRNPE--IEVKSIIDPGFPSHVKGDPLRF 503

Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPF 760
           +QI  N++ NA+ FT  G  I + T    +E     V + V D+G+G+ +  +     PF
Sbjct: 504 RQILQNLVGNAVKFTDKG-YIHVRTCFKEDERDDYSVTVEVIDSGIGVADEAMNTLFAPF 562

Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA-KGTLIEIIF 808
            +  NS   R +GTGLGL + K++ +   G     + P  +G++  +  
Sbjct: 563 TRSANSATKRYQGTGLGLSICKSLAELMGGAVGYRTNPDCQGSIFWLKI 611



 Score = 55.0 bits (131), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 13/118 (11%), Positives = 33/118 (27%), Gaps = 9/118 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR--QNTW 143
            + +D  GY+   +       G  A +++G                   +L+        
Sbjct: 270 IFMLDTKGYITTWNAGAAILKGYTAEEVLGKHFSMFYGEDDCAQGKPRKELVLSLHDGKV 329

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFG-IVHVNRVDNDPRALGKRL 200
             +   +  +G+  +  + +   P++    +F    GF  +V                
Sbjct: 330 EDEGWRYRKDGSRFWANVTI--TPVH----QFGHHVGFVKVVRDLTERKAAETRLIAA 381


>gi|90420832|ref|ZP_01228737.1| putative histidine kinase [Aurantimonas manganoxydans SI85-9A1]
 gi|90334807|gb|EAS48579.1| putative histidine kinase [Aurantimonas manganoxydans SI85-9A1]
          Length = 782

 Score =  313 bits (803), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 120/554 (21%), Positives = 234/554 (42%), Gaps = 52/554 (9%)

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSVDDIEI 362
                    A + E        + +     + +       Y + S   +      D +  
Sbjct: 238 QATRAQDADALYLETHQRVDTALSRGHCGLWDWDIARGRMYWSRSMYEILDLCPRDSVLA 297

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
            G ++ L+      D+ ++  V    +     +   R+  ++    + + +         
Sbjct: 298 FGDIAPLMH----PDDGSLFEVARQVAAGKITSLD-RVFRMRHRDGSYVWLRARAEVSRT 352

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
              E +   G+  +  + +   R+ +    QL + +E  S+   + + +  ++  N    
Sbjct: 353 AENE-VHLIGVAVDVSEQQELARRTDEANTQLNNAIENISETFVLCDSQDRLVLCNSKYR 411

Query: 483 KLFGYPVEDI-LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
           + FG    D+    P    +            +  ++     + E+ +     + + L L
Sbjct: 412 ETFGLTEADVARGTPLATVMA----KARKPIDSHAVTSPTFASGERASEALLPDGRWLLL 467

Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK--------------------- 580
               ++      +     D+++ K  + +LS +++                         
Sbjct: 468 S---ERRTADDGFVSIGTDVTQLKLHQARLSDSERRLMAVIDDLSIARRDAERKAVQLTE 524

Query: 581 --------------ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
                          SS K+ FLA +SHE+RTPL AI+GFSE+++   FGP+G P+Y EY
Sbjct: 525 MNQNYAAEKERAETASSAKTTFLANMSHELRTPLNAILGFSEIMRQGTFGPIGCPKYGEY 584

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
           A  I +SG+ +L ++ND+LD++KIE+G++ L+ E V L E  +E   ++++ A++K I +
Sbjct: 585 AEDIHQSGHYLLKLINDILDMAKIEAGRLVLNHETVDLSEIATETGKIIEVQADQKAICL 644

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
                  +  +  D R+ KQI LN+LSNA+ FT +GG + +    T  +  ++ + D G+
Sbjct: 645 DADVPERM-ELTVDRRATKQIVLNLLSNAVKFTDNGGTVKMKLR-TVGDAALITIADNGM 702

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+    L+   KPF QI N      +GTGLGL +A+++V    G+  I S   +GT++ I
Sbjct: 703 GIPRAALKSLGKPFEQIENELTRTNKGTGLGLAIARSLVALQGGRMRISSQVGEGTIVAI 762

Query: 807 IFPLYDTSHPHDCI 820
             PL       + +
Sbjct: 763 RLPLTPAPAQTEAL 776



 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/422 (10%), Positives = 111/422 (26%), Gaps = 40/422 (9%)

Query: 84  RFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMR-----LCDVSDILHIDPNNHIGDLLK 138
           RF    D+ G +          +G    ++IG         + + +      +    +  
Sbjct: 128 RFAVVSDSDGMIVAAMPGFENLVGGDLKRLIGEHQELLMFGERAGVQDTRFGSEPALVAS 187

Query: 139 RQNTWYGKTTLWPIEGTNL----YVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR 194
            +         +    T+L       + +    +++          +          D  
Sbjct: 188 ARLADNQGILTFVQRETDLLSEWRHSVSVNVT-LFALTSTIMLVVLYAYFRQATRAQDAD 246

Query: 195 ALGKR-LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM--KNKVSSLTEYYA--- 248
           AL      +  + L     G    +  +  ++  +S    L +  ++ V +  +      
Sbjct: 247 ALYLETHQRVDTALSRGHCGLWDWDIARGRMYWSRSMYEILDLCPRDSVLAFGDIAPLMH 306

Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG---TLQNNSKESFEYLSH 305
             D  L      +   + +SL         + +    +       T +N        +  
Sbjct: 307 PDDGSLFEVARQVAAGKITSLDRVFRMRHRDGSYVWLRARAEVSRTAENEVHLIGVAVDV 366

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAG 364
                L+   DE        ++     F +      L   N  +         D      
Sbjct: 367 SEQQELARRTDEANTQLNNAIENISETFVLCDSQDRLVLCNSKYRETFGLTEADVARGTP 426

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
             + +  A K  D++A+        +        R           L ++          
Sbjct: 427 LATVMAKARKPIDSHAVTSPTFASGE--------RASEALLPDGRWLLLSERRTADD--- 475

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI---ILSTNRAV 481
                   I  +    ++++ ++     +L ++++  S  IA  + E     +   N+  
Sbjct: 476 ----GFVSIGTDVTQLKLHQARLSDSERRLMAVIDDLS--IARRDAERKAVQLTEMNQNY 529

Query: 482 SK 483
           + 
Sbjct: 530 AA 531


>gi|270263222|ref|ZP_06191492.1| aerobic respiration control sensor protein ArcB [Serratia odorifera
           4Rx13]
 gi|270042910|gb|EFA16004.1| aerobic respiration control sensor protein ArcB [Serratia odorifera
           4Rx13]
          Length = 815

 Score =  313 bits (803), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 88/436 (20%), Positives = 180/436 (41%), Gaps = 17/436 (3%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L             L+    +  + L        KA Q  + +  + +  E
Sbjct: 85  EESRQRLARLVDKLEEMRHRDLELNQQLKDNISQLNQEIADRIKAEQDRQQV-MDKLTEE 143

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
                + + ++  +   L S L+A+ D +   N +      NRA+  L G   + ++   
Sbjct: 144 MEQRELAQIELGQQSALLRSFLDASPDLVYYRNEDKEFSGCNRAMELLTGKSEKQLIGLT 203

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII--KKLPFSSCY 554
                 Q     +     ++   ++  T E+  +     +    LR +    ++      
Sbjct: 204 PFDVYSQEIAEKVIETDEKVFRHNVSLTYEQWLVYPDGRKACFELRKVPFYDRVGKRHGL 263

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+ ++ L +        S  K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 264 MGFGRDITERKRYQDALEN-------ASRDKTTFISTISHELRTPLNGIVGLSRILLDTD 316

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                N   ++Y   I  S   + +I ND++++ K+E  K+ L  +PV     +++  +L
Sbjct: 317 L----NDEQLKYLKTIHVSAITLGNIFNDIIEMDKLERRKVQLDNQPVDFTGFLADLENL 372

Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
             L A  K +       + +P+ I+ D   ++QI  N++ NA+ FTP G QI++      
Sbjct: 373 SGLLAQPKGLQFVMEPQSPLPQQIITDGTRLRQILWNLIGNAVKFTPHG-QIVVRVRREE 431

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQI-PNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
            + ++  V D+G+G+   E +K    + Q+          GTG+GL ++K +  +  G  
Sbjct: 432 QDRLVFEVEDSGMGIPQDEQDKIFAMYYQVKDQHGGRPATGTGIGLAVSKRLAQSMGGDI 491

Query: 793 YIFSTPAKGTLIEIIF 808
            + S    G+   +  
Sbjct: 492 TVSSVQGHGSCFTLTI 507


>gi|148977367|ref|ZP_01813967.1| PAS/PAC Sensor Hybrid Histidine Kinase [Vibrionales bacterium SWAT-3]
 gi|145963319|gb|EDK28584.1| PAS/PAC Sensor Hybrid Histidine Kinase [Vibrionales bacterium SWAT-3]
          Length = 1424

 Score =  313 bits (803), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 103/519 (19%), Positives = 190/519 (36%), Gaps = 44/519 (8%)

Query: 307  NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGG 365
            +     +            ++  P P  V      L   N     L  +  ++       
Sbjct: 539  DRKRAESALKHQVEFERSLLNAMPFPIVVRDLENQLVSFNSVARALKDFDLIE------- 591

Query: 366  LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
               +++ P          V+                          A    P+       
Sbjct: 592  -EAIINNPDEDAMIHKGNVLPRLEKEVVSPF----------GSKHYAYWKCPYISNGSIE 640

Query: 426  ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA--------IINREGIILST 477
             ++       E  + +   +  +  V +L          +         + + E   +  
Sbjct: 641  GSVTILDDLTELYEAKKIAKSADDRVQKLA---NNLHGAVIQHIQPKRSLHDIE--FVFI 695

Query: 478  NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEE 536
            +  + +L G     +  +  T F            + +I   +    L     +    + 
Sbjct: 696  SNGIEELLGLTPSQLR-RSPTSFFAPLNAKDRRTLIRKIRCGNKDGKLSLDIGVNIENQN 754

Query: 537  KLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
            + L+L+  I        +   + DI+E KQ++ +L+ A++ A   +  KS FLA +SHEI
Sbjct: 755  RWLNLQSKISDRGDYYEWDSVLTDITELKQQQEELTQARQSAIAATEAKSRFLANMSHEI 814

Query: 597  RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
            RTPL  I+   E+ +    G        +    + +S N +L IVND+LD SKIE+GK+ 
Sbjct: 815  RTPLGGIVSLLELSEQYEVGH----EVQKIHTTLSQSANNLLHIVNDILDFSKIEAGKLT 870

Query: 657  LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNA 715
            L ++P SLD        L    A+ K +  +      +   +L D   + Q+  N+LSNA
Sbjct: 871  LDYQPASLDTLTLRVTQLQARQAHAKGLQFKFWLDPELKDSVLMDDIRLGQVLNNLLSNA 930

Query: 716  IHFTPSGGQIIISTTH----TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
            I FT  G  + ++T         ++V   V D+G+G++   +    +PF Q       + 
Sbjct: 931  IKFTEHG-TVGLTTKLVSQNDGQQQVCFEVFDSGIGISEEHIRNLFRPFVQADEGTTRKY 989

Query: 772  EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             G+GLGL ++K +++   G   + S    G+   I  PL
Sbjct: 990  GGSGLGLTISKQLIEQMGGTLNVISKVNLGSTFTISVPL 1028



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/135 (13%), Positives = 40/135 (29%), Gaps = 12/135 (8%)

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
           +  E  D +  +  ++ +V    S+L A    I + + E  ++S N     L  +     
Sbjct: 533 LSREVEDRKRAESALKHQVEFERSLLNAMPFPIVVRDLENQLVSFNSVARALKDFD---- 588

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
                   L +            I   ++   LEK  +     +     +          
Sbjct: 589 --------LIEEAIINNPDEDAMIHKGNVLPRLEKEVVSPFGSKHYAYWKCPYISNGSIE 640

Query: 553 CYSLTMHDISEWKQE 567
                + D++E  + 
Sbjct: 641 GSVTILDDLTELYEA 655


>gi|325958983|ref|YP_004290449.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanobacterium sp. AL-21]
 gi|325330415|gb|ADZ09477.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanobacterium sp. AL-21]
          Length = 769

 Score =  313 bits (803), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 99/741 (13%), Positives = 250/741 (33%), Gaps = 42/741 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI-DPNNHIGDLLKRQNTWYGKT 147
            D +  +   +    +  G  + +++G     V     I +   +   +L  + ++  + 
Sbjct: 47  TDENFKISYWNPAAEEIYGWKSSEVLGKTAKTVLRTKFIGNEQPNTSKMLSEKGSYENEF 106

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
             +    T    P+ +++  +   +          I        +     KR     + +
Sbjct: 107 LQF----TKKNFPLYISSKIVTITDGNGVVNGHISINRDMTATKNTEKKLKRSYNILNSI 162

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLR---MKNKVSSLTEYYAH--KDDVLKTEKYPLL 262
            E       ++    +     +    +    +   +        H    +V+ TE   ++
Sbjct: 163 VENTNDAIYLKNLSGNYIMVNTATSEIMGKPISEIIGKNDWDLYHGEDAEVITTEDKEII 222

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS----LSAYFDEG 318
            + E+   E+  +              G                   +    +     + 
Sbjct: 223 ENIETLTYEESLYSEREGEIRDYITTKGPYMGFDDSILGIFGIGRDITHLKGVEERIVKS 282

Query: 319 ENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
           E       +            G +   NP+   +  Y   +               +   
Sbjct: 283 EQKYRRLFETMIQGVVYQDSSGKITSMNPAAEKILGYSLAEIQGQKPQDIVQESVHEDGS 342

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
               +    Y +  T       +  ++        ++           +         + 
Sbjct: 343 EFLAEEFPSYLALNTGKEIEDVIMGLKIPSG-YRWLSVHAVPLIGDDDKPFQVYTTFNDV 401

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGI----AIINREG-----IILSTNRAVSKLFGYP 488
            D  + + +++    +  S+    ++G      + +  G     I L  N A  +L G  
Sbjct: 402 TDKIVAQNELKKSEKRYRSLFNKMTEGFALHEIVCDSNGEPVDYIFLDINPAFEELTGLK 461

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            EDI+ +  +  + ++T + +  Y    L        E  +  +           ++   
Sbjct: 462 REDIIGRRESEVIPEDTVNWVKIYGEVALEDVSIHFNEYSSALNRH-------YDVLAFS 514

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
           P  + +++  +DIS+  + +N+L    +  +  +S    F    SH+++ PL  I  F +
Sbjct: 515 PGKNQFAVIFNDISQRVRIENELKETLRQLKLTNSELKQFAYIASHDLKEPLRVITSFLQ 574

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
            +  +R+    +    E+ N+       + ++++DLL+ SKI     +  F  V  ++ +
Sbjct: 575 -LLQRRYKDQLDEDADEFINFAVDGAIHLHELIDDLLEYSKI--NTRSDEFTCVDFEDVL 631

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF-TPSGGQIII 727
               + + +   E  + I    +  +P+I AD   + Q+  N+++N+I + +    +I I
Sbjct: 632 KIVETNLDILIKENNVFIT---SGKLPKIRADKTQMIQLFQNLINNSIKYRSVKSPEIHI 688

Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
           S T+  ++ +   V D G+G+ +   ++  K F ++ +S      GTG+GL ++K +V+ 
Sbjct: 689 SATNNGDKWI-FSVEDNGIGIPSKYSKQIFKIFKRLHDSY--EYNGTGIGLAISKRIVEK 745

Query: 788 NMGKFYIFSTPAKGTLIEIIF 808
           + G  ++ +    GT      
Sbjct: 746 HGGTIWVDTERINGTKFNFTI 766



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 46/123 (37%), Gaps = 9/123 (7%)

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
           +L SIL    D + I +    I   N A  +++G+   ++L K     L           
Sbjct: 35  ELLSIL---KDAVIITDENFKISYWNPAAEEIYGWKSSEVLGKTAKTVLRTKFIGNEQPN 91

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS----LTMHDISEWKQEK 568
            +++LS   + + E   L  TK+   L +   I  +   +           D++  K  +
Sbjct: 92  TSKMLS--EKGSYENEFLQFTKKNFPLYISSKIVTITDGNGVVNGHISINRDMTATKNTE 149

Query: 569 NKL 571
            KL
Sbjct: 150 KKL 152


>gi|75908983|ref|YP_323279.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
 gi|75702708|gb|ABA22384.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
          Length = 1557

 Score =  313 bits (803), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 116/736 (15%), Positives = 246/736 (33%), Gaps = 52/736 (7%)

Query: 92   HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNT--WYGKTTL 149
             G   + +  L    G  + ++  M+  +++    ++ +      +  +    +  +   
Sbjct: 715  DGQFLQNNPALCDITGYSSEELSQMKFPEITHPDDVEADWAYAKQVLAKEINGYSLEKRY 774

Query: 150  WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
               +GT   V ++L A  +++   E     G  I+          A    L +  + L  
Sbjct: 775  LRKDGTT--VWVNLTASAVWNEQGEPKYALG--IIEDINERKQAEAAQNFLVEASTILAA 830

Query: 210  IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
                  ++               HL +              D  +K      +   +  +
Sbjct: 831  SLDYEVALNNVA-----------HLAVPTIADWCAVDILQADWSIKRVAIACVNPAKLEI 879

Query: 270  PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
             E+         +         L+  S    E  +                 + E     
Sbjct: 880  IEEIRRSYPTRTEGKHPFRDKLLKGASAFYPELPNSILVEIAQDEQHLQLLQSLEMRSLM 939

Query: 330  PIPFF--VYSHGNLFYANPSFLLLTKYKSV---DDIEIAGGL----STLLDAPKLSDNNA 380
             +P +      G + +   S     K   +   +DI          + L    + +   A
Sbjct: 940  VVPLYSREQIFGVISFVTGSSGRQLKQTDLALAEDIARRAATAIDNARLYQETQQAKQAA 999

Query: 381  IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
               +      ++  AA +   T Q   +  +         +      + + G   + +  
Sbjct: 1000 ELAMSRMLRLQSITAALSEALTPQQVADVVVNQGLAALGASAGSVVLLTEGGTTLKIIQA 1059

Query: 441  RINKRKMEIEVMQLCSILEATSDGIAIINREGI-ILSTNRAVSKLFGYPVEDILRKPFTV 499
                  ++             +  IA   R G  I   N     +  +  +         
Sbjct: 1060 IGYPESVQDAWETFPL---TATVPIAETARTGEAIFLAN-----VTEFAAKYPQIANVPS 1111

Query: 500  FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH 559
                   + +   + +     +  +       + +++K +             C      
Sbjct: 1112 LTGNCAFACIPLIVEQQTIGVMALSFATAQKFNEEQQKFML-------TLGQQCAQAIAR 1164

Query: 560  DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
                  Q      +A+ +AE  +  K +FLA +SHE+RTPL  I+G++++++ + +    
Sbjct: 1165 -----SQLYEAEKNARAVAESTNRIKDEFLAVLSHELRTPLNPIMGWAKLLRTRTY---K 1216

Query: 620  NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
                 +    I+R+  L   +++DLLD+S+I  GK+NL+   V L   V   +  V+L A
Sbjct: 1217 EETIKQGLETIERNAKLQTQLIDDLLDVSRILRGKLNLNVCLVDLRNTVQAGLETVRLAA 1276

Query: 680  NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
              K I I T  ++   +++ D   ++Q+  N++SNA+ FTPS G++ +       +   +
Sbjct: 1277 EAKSIAIHTILSDEPVQVMGDGDRLQQVIWNLVSNAVKFTPSEGRVEVRLEQVGRD-AQI 1335

Query: 740  RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-P 798
            +V DTG G+T   L    + F Q          G GLGL +   +V+ + G     S   
Sbjct: 1336 QVIDTGKGITPEFLPYVFEYFRQADAKTTRVFGGLGLGLAIVHHLVELHGGTVVAQSAGE 1395

Query: 799  AKGTLIEIIFPLYDTS 814
             +G    +  PL+ ++
Sbjct: 1396 DQGATFTVKLPLHKSA 1411



 Score =  129 bits (325), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 61/622 (9%), Positives = 151/622 (24%), Gaps = 90/622 (14%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D        +E L    G    + IG  L +V           +  ++  +     +  
Sbjct: 278 LDTKLRYVYTNEALAAINGVPQSQHIGRTLREVLPEWATQLEPILQQVMATKQPLVNQEV 337

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                 + ++    +   P+   + +  G                    + + +  + L 
Sbjct: 338 CGVTYPSGVHRCSLVNYYPVCLPDGKLLGVG--VTALDITERKQAEDALRYIAQTSNTLS 395

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
                  ++ +       Q +    + + N+  S+        D  K E   L       
Sbjct: 396 SSLDYEQTLAQIAKISVPQLADWCSIDIINQDGSIRRLPIAHVDPTKAELARLFQEYAPQ 455

Query: 269 LPE-------QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH---------------- 305
           L          +    + +               + E    +                  
Sbjct: 456 LGSGSLVANVLQTGEQLLVADLPDSPLPADQNEENLELLRQIGIKSLMLLPLIAHEQVLG 515

Query: 306 --------------------RNHPSLSAYFDEGENLTPETVDKC---------------- 329
                                   +  A            V +                 
Sbjct: 516 CITFVSAESGRSYNQSDLSLAKDIAYRAALAMENAQLYRDVQQALKHYAESLALLDALLA 575

Query: 330 --PIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
             P+   F+         N     L      + +              L          L
Sbjct: 576 GAPVAVCFLDKELRYLRINQVLADLNGLSIEEHLGRKF-------QDVLPKMAEQFEEQL 628

Query: 387 YRSDRTCIAASARLHTIQWNRENSL--AMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
            +   T         + +      +        +   +   + +    I  +   T+  +
Sbjct: 629 QQVLETGQPLLNLEVSGEALGRPEINSYWLGNYYPVYDGMGKTVGIGIILADVTATKQVE 688

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
             +     +  ++ +  + GI ++  +G  L  N A+  + GY  E++ +  F      +
Sbjct: 689 IALRESEERFRAMFDQAAVGITLVTLDGQFLQNNPALCDITGYSSEELSQMKFPEITHPD 748

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHD 560
                  Y  ++L+ ++            K+   + + +    +             + D
Sbjct: 749 DVEADWAYAKQVLAKEING-YSLEKRYLRKDGTTVWVNLTASAVWNEQGEPKYALGIIED 807

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLA--RVSHEIRTPLTAI-------IGFSEVIK 611
           I+E KQ +   +   + +   ++     +A   V+H +  P   I       I  ++   
Sbjct: 808 INERKQAEAAQNFLVEASTILAASLDYEVALNNVAH-LAVP--TIADWCAVDILQADWSI 864

Query: 612 NQRFGPLGNPRYIEYANYIDRS 633
            +      NP  +E    I RS
Sbjct: 865 KRVAIACVNPAKLEIIEEIRRS 886



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/304 (13%), Positives = 93/304 (30%), Gaps = 26/304 (8%)

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
                     + E      +    I  F       +             S ++I      
Sbjct: 114 QDAVNLQKLRQSEERFRLALSNSDIVVFQQDRDLRYRW---IHNYQGVASAEEIIGKSDN 170

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
             L  A       AIK  +L       ++    +  I   +     +   P     Q   
Sbjct: 171 E-LFPASVAEKLTAIKQKVL----EKDVSVHEEVSVIFHGKVVYYDLLAEPLTIDGQIQG 225

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQ-----------LCSILEATSDGIAIINREGIIL 475
                    E   + + K K++ ++ +           L + L ++   +A ++ +   +
Sbjct: 226 ITCAAVDITERKRSELEKAKLQSKLQKAIEQQDEYLALLNAWLASSPVALAFLDTKLRYV 285

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI--TLGST 533
            TN A++ + G P    + +     L     + +   L ++++       +++      +
Sbjct: 286 YTNEALAAINGVPQSQHIGRTLREVL-PEWATQLEPILQQVMATKQPLVNQEVCGVTYPS 344

Query: 534 KEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS--DFL 589
              +   +      LP        +T  DI+E KQ ++ L +  + +   SS       L
Sbjct: 345 GVHRCSLVNYYPVCLPDGKLLGVGVTALDITERKQAEDALRYIAQTSNTLSSSLDYEQTL 404

Query: 590 ARVS 593
           A+++
Sbjct: 405 AQIA 408


>gi|289937582|ref|YP_003482184.1| PAS/PAC sensor signal transduction histidine kinase [Natrialba
           magadii ATCC 43099]
 gi|289533273|gb|ADD07622.1| PAS/PAC sensor signal transduction histidine kinase [Natrialba
           magadii ATCC 43099]
          Length = 786

 Score =  313 bits (803), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 102/739 (13%), Positives = 231/739 (31%), Gaps = 64/739 (8%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK 146
           + +D     + +++      G      IG  +   ++ +     N + + L+ Q     +
Sbjct: 96  YALDEELRFRYLNDTAADLFGLDEGA-IGSDIR--NENVTETYENALCEALETQEPVTFE 152

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD----- 201
               P++     V        IYS     S +                    R +     
Sbjct: 153 DYYPPLDKWFQNV--------IYSSESGLSVYT-----RNITERKRREQELARYETIVET 199

Query: 202 -KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
                 + +             +I+ +     +    +                  + +P
Sbjct: 200 SPIGITIVDSDGKMQFANDRAEEIYGRSKAQINDLSFDDSDWNEVDVDSTPLPDDEKPFP 259

Query: 261 -LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL----SHRNHPSLSAYF 315
            ++ S++S           +  +         + +   E    +                
Sbjct: 260 QIIESKDSVFDHVSGVSRPDGERVWVSVNGAPVYDERGEIESVVFSIEDVTERRERQRAL 319

Query: 316 DEGENLTPETVDKCPIPFFVYSHGNLFYANPS--FLLLTKYKSVDDIEIAGGLSTLLDAP 373
           +E E       +             L Y   +        +   D          L +  
Sbjct: 320 EESERRYRTLAENFQNGLVTQFDEELRYTLAAGQAFDYLPHSPDDVEGQ-----HLHEVW 374

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
                + I+PV     +    +        +W                +Q  E      I
Sbjct: 375 DTDVADTIEPVYQTVLEGEKQSIEGTSEGCEW--------IVQVVPLTDQDGEIHGGTAI 426

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDG-IAIINREGIILSTNRAVSKLFGYPVEDI 492
             +  + +  +R +E    +  ++ E   +G + + + +    +    +    G   ED 
Sbjct: 427 ALDITERKERERALEESERRYRTLAENFPNGAVGLFDDDLRYTAVGGELLDTVGVSPEDW 486

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
           +               +  Y    L   +    E            L +R +  ++    
Sbjct: 487 VGNSVYDTYPDELVEEVKQYFEAALEGKMNS-FEVEYHNRNLFVNTLPVRNVDDEVYAG- 544

Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
              L + D++E ++        ++  E  +     F   VSH+++ PL  +  + + + +
Sbjct: 545 --MLVVQDVTERRE-------YQRKLEASNERLEQFAYAVSHDLQEPLRMVTSYLQ-LLD 594

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
           QR+G        E+  +       +  +++ LL+ S++E+      FEPV LD  + E  
Sbjct: 595 QRYGDALGEDGEEFIEFAVDGAERMRAMIDGLLEYSRVETQGEP--FEPVDLDAILEEVR 652

Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT-PSGGQIIISTTH 731
             +QL   E    I    A+++P +  D   ++Q+  N+L+NAI ++     +I I    
Sbjct: 653 DDLQLRIAETEAEIT---ADDLPTVAGDASQLRQVFQNLLNNAIEYSGDEPPRIDIDAER 709

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
               +  + V D G+G+     ++  + F ++  S      GTG+GL L + +V+ + G+
Sbjct: 710 V-GGQWQITVSDHGIGINPDNQDRVFEVFQRLHTSN--EHPGTGIGLALCQRIVERHDGE 766

Query: 792 FYIFSTPAKGTLIEIIFPL 810
            ++ S P  G+      P+
Sbjct: 767 LWVESEPGDGSAFSFTLPV 785



 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 40/123 (32%), Gaps = 11/123 (8%)

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
           L  + +  SD    ++ E      N   + LFG     I     +    +N      + L
Sbjct: 84  LGKVFDRISDSFYALDEELRFRYLNDTAADLFGLDEGAIG----SDIRNENVTETYENAL 139

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH 573
            E L      T E       K  + +            S  S+   +I+E K+ + +L+ 
Sbjct: 140 CEALETQEPVTFEDYYPPLDKWFQNVIYS-------SESGLSVYTRNITERKRREQELAR 192

Query: 574 AKK 576
            + 
Sbjct: 193 YET 195


>gi|120436036|ref|YP_861722.1| two-component system sensor histidine
            kinase/methyl-esterase/transferase hybrid [Gramella
            forsetii KT0803]
 gi|117578186|emb|CAL66655.1| two-component system sensor histidine
            kinase/methyl-esterase/transferase hybrid [Gramella
            forsetii KT0803]
          Length = 1385

 Score =  313 bits (803), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 94/613 (15%), Positives = 199/613 (32%), Gaps = 26/613 (4%)

Query: 202  KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
            ++   + +      S     Y  F         +    + +         ++L+      
Sbjct: 784  REPLVVLDKSLNVKSANAAFYKKFHLDESEIEGKAIFDLENKGWNIPELKNLLREILPKH 843

Query: 262  LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
             +  +  +                ++              +    +   +    ++ E  
Sbjct: 844  SSFYDHEITHDFPGLGQRTMLLNGREIIREEGGEKLILLVFGDITDKRLIEKNLEKSEIK 903

Query: 322  TPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
                VD      ++ +  GN+ + NP +   T   S + I+       +           
Sbjct: 904  FKLLVDSISQLIWISNAEGNIEFFNPQWQHYTGINSGESIKDGMWEEAIHPDDL---KEF 960

Query: 381  IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
                              RL   +    N            N   E M   G        
Sbjct: 961  KDQFNKCIDTGKSFTKETRL---ELKEGNYNWYLAKAMPYYNPDGEIMKWFGSFTNIEVQ 1017

Query: 441  RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
            +  +  +         + E   D I   N EG +   N++     G   +++       F
Sbjct: 1018 KQAEATLRKSEEHFRQLAELIPDKITKANAEGEVTYYNQSWLNYTGLTRDELKETSLNGF 1077

Query: 501  LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
            L       +     + +        E       K        +    +            
Sbjct: 1078 LHPKEKWEIKKKWKKSVDSGDA--FEMEIQILNKSGDYCWHLVRSIPVKDEK-------- 1127

Query: 561  ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP--- 617
              E  +     +   +  ++E   K DFL  VSHE++TP+T+I G+++++ +        
Sbjct: 1128 --EQIKFWIGTTTEIQKLKEEEKRKEDFLKMVSHELKTPVTSIKGYTQLLLDMLMASTEI 1185

Query: 618  -LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
             L +         ID   + +  ++ ++LD+S+IE  KM LH +  +L++ + E+I  ++
Sbjct: 1186 NLDSIPLKPSLERIDSQVSRLTRLIAEILDLSRIEGDKMVLHKKAFNLNDLIDESIQDIK 1245

Query: 677  LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
              + E  I I          +  D+  + Q+ +N ++NAI ++P    I +    + N +
Sbjct: 1246 YSSRESNIDID---HEGSFEVCGDMDRIGQVLINFITNAIKYSPDDKNIEVRVFESGNNK 1302

Query: 737  VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
            V + V+D G+G+    L+   K F ++         G G+GL LAK +++ + G   + S
Sbjct: 1303 VSVSVKDHGIGIDQKHLKNIFKRFYRVSQKNDETYSGFGIGLFLAKEIIERHRGNVAVKS 1362

Query: 797  TPAKGTLIEIIFP 809
               +G+      P
Sbjct: 1363 NKGEGSEFIFTIP 1375



 Score = 67.7 bits (164), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 30/251 (11%), Positives = 78/251 (31%), Gaps = 12/251 (4%)

Query: 85   FTWNIDAHGYLKEISEELPKTIGNYAFKMI--GMRLCDVSDILHIDP-NNHIGDLLKRQN 141
              W  +A G ++  + +     G  + + I  GM   +      +    +     +    
Sbjct: 914  LIWISNAEGNIEFFNPQWQHYTGINSGESIKDGM-WEEAIHPDDLKEFKDQFNKCIDTGK 972

Query: 142  TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
            ++  +T L   EG   Y      A+P Y+ + E    + FG      V     A  ++ +
Sbjct: 973  SFTKETRLELKEGN--YNWYLAKAMPYYNPDGEI--MKWFGSFTNIEVQKQAEATLRKSE 1028

Query: 202  KKFSHLHEIKKGHSSVEKEKYDIFSQQSP----PPHLRMKNKVSSLTEYYAHKDDVLKTE 257
            + F  L E+     +    + ++              R + K +SL  +   K+     +
Sbjct: 1029 EHFRQLAELIPDKITKANAEGEVTYYNQSWLNYTGLTRDELKETSLNGFLHPKEKWEIKK 1088

Query: 258  KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
            K+        +   +      + +          +++  ++   ++            ++
Sbjct: 1089 KWKKSVDSGDAFEMEIQILNKSGDYCWHLVRSIPVKDEKEQIKFWIGTTTEIQKLKEEEK 1148

Query: 318  GENLTPETVDK 328
             +    + V  
Sbjct: 1149 RKEDFLKMVSH 1159



 Score = 58.1 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 17/227 (7%), Positives = 63/227 (27%), Gaps = 4/227 (1%)

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
              +   +   ++A + +     D+       +    +         +     + ++   
Sbjct: 689 DARIHQLEQELSHAREDMRSITEDQEATNEELQSANEELQSSKEELQSLNEELETSKEEL 748

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
                 +   + +   N +++ +       I+    + + ++++   + S N A  K F 
Sbjct: 749 QSTNEELITLNDELVNNNKRLTVSKNYSQDIVSTLREPLVVLDKSLNVKSANAAFYKKFH 808

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
               +I  K       +         L   +        +             ++ +  +
Sbjct: 809 LDESEIEGKAIFDLENKGWNIPELKNLLREILPKHSSFYDHEITHDFPGLGQRTMLLNGR 868

Query: 547 KLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
           ++           L   DI++ +  +  L  ++   +      S  +
Sbjct: 869 EIIREEGGEKLILLVFGDITDKRLIEKNLEKSEIKFKLLVDSISQLI 915


>gi|148255093|ref|YP_001239678.1| PAS/PAC sensor hybrid histidine kinase [Bradyrhizobium sp. BTAi1]
 gi|146407266|gb|ABQ35772.1| PAS/PAC sensor hybrid histidine kinase [Bradyrhizobium sp. BTAi1]
          Length = 951

 Score =  313 bits (803), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 108/751 (14%), Positives = 230/751 (30%), Gaps = 65/751 (8%)

Query: 97  EISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY-GKTTLWPIEGT 155
             ++   + +G    K +G R  ++   +  D    I   +  + T+      L   +G 
Sbjct: 93  LYNDSYAEILGGKHPKALGERFSEIWAEIWPDIAPLIEAAMAGEATYREDLPLLMNRKGF 152

Query: 156 NLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHS 215
                   +  P+ +   + +G   F                    ++   + E   G  
Sbjct: 153 EEQTWFTFSYSPVRNEAGQVAGM--FCACSETTAKVVAERRSLEERERLQRMFEQAPGFM 210

Query: 216 SVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP----LLTSEESSLPE 271
           ++       F+  +P     + ++        A   D              ++ E+ +  
Sbjct: 211 AMLSGPEHRFTLTNPAFQQLIGHRDVLGKPVSAALPDAAAQGYVEHLNKAFSTGEALIFS 270

Query: 272 QEDFHTINLN-----QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
              +           +      +  +++               +     +   + +   +
Sbjct: 271 SAPYAMQAAPGGPITERLVDFVYQPVRDADGAVTGVFVEGYDVTERVRAEAALSASEARL 330

Query: 327 DKCP----IPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
                   I  + +    G +   +P    +                  +  P   D  A
Sbjct: 331 KLAQQAAGIGVWDWDLVTGAIS-WSPEMYDILGLDPAKHAGTPYDTWLGILHPDDRD-LA 388

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
            +      +     +   R+            +        +         G+  +    
Sbjct: 389 DRTAREAAAKGEAFSIDFRI--KHQQTGEQRWVRSRATAVLDDQGRPARLVGVNVDVTGE 446

Query: 441 RIN-----------KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
           R             +  +E    +   I + ++D  A++  +G + + N A  +L GY  
Sbjct: 447 RRREEGLRELAGDLQTAVEASERERNRIYDLSNDLFAVVGFDGFLKTINPAWERLLGYSR 506

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
            ++L KP    +  +  +     +  + + D  Q  E   +  T +   + +        
Sbjct: 507 AELLAKPLAAVIHPDDLAAAGQVIAALQTRDPLQRFENRLI--TADNNTIWVAWAAVP-- 562

Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
               +     D+S  +++   L  ++K+              V+H+    LT I+G  ++
Sbjct: 563 EGDRFYAVGRDVSREREQDEALRQSRKM-----EAMGQLTGGVAHDFNNLLTPIVGALDM 617

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           ++ +  G     R         +S +    +V  LL  ++    +  L    V L   V+
Sbjct: 618 LQRRGVGG---EREQRLIAGAVQSADRAKTLVQRLLAFAR----RQPLQPVAVDLGLLVA 670

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
               LV       +I +    A ++P   AD   ++   LN+  NA    P GG + IS 
Sbjct: 671 GMGELVAST-TGPQIKVVVDAARDLPPAKADPNQLEMAVLNLAVNARDAMPDGGTLRISV 729

Query: 730 T-----------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
                             + L V D+G GM    L +A++PF     S +  G+GTGLGL
Sbjct: 730 RAATIGRQHRSNLKPGPYLHLSVADSGTGMDEVTLSRAIEPFF----STKGIGKGTGLGL 785

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            +   +     G   I STP  GT +E+  P
Sbjct: 786 SMVHGLATQLGGALTIHSTPGVGTNVELWLP 816



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 40/391 (10%), Positives = 80/391 (20%), Gaps = 46/391 (11%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGKTT 148
                    +    + IG+    ++G  +              H+             + 
Sbjct: 215 GPEHRFTLTNPAFQQLIGHR--DVLGKPVSAALPDAAAQGYVEHLNKAFSTGEALIFSSA 272

Query: 149 LW----PIEGTNLYVPIDLAALPIYSRNREFSG--FRGFGIVHVNRVDNDPRALGKRLDK 202
            +       G      +D    P+   +   +G    G+ +    R +    A   RL  
Sbjct: 273 PYAMQAAPGGPITERLVDFVYQPVRDADGAVTGVFVEGYDVTERVRAEAALSASEARLKL 332

Query: 203 KFSHLH------EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256
                       ++  G  S   E YDI             +    +   +    D+   
Sbjct: 333 AQQAAGIGVWDWDLVTGAISWSPEMYDILGLDPAKHAGTPYDTWLGIL--HPDDRDLADR 390

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA--- 313
                    E+   +    H     Q   +     + ++       +      +      
Sbjct: 391 TAREAAAKGEAFSIDFRIKHQQTGEQRWVRSRATAVLDDQGRPARLVGVNVDVTGERRRE 450

Query: 314 ------------YFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDI 360
                         +  E       D     F V    G L   NP++  L  Y   + +
Sbjct: 451 EGLRELAGDLQTAVEASERERNRIYDLSNDLFAVVGFDGFLKTINPAWERLLGYSRAELL 510

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
                    +  P            L   D            I  +              
Sbjct: 511 AKPLAA---VIHPDDLAAAGQVIAALQTRDPLQ---RFENRLITADNNTIWVAW------ 558

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEV 451
               PE      +  +    R     +    
Sbjct: 559 -AAVPEGDRFYAVGRDVSREREQDEALRQSR 588



 Score = 64.7 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 30/244 (12%), Positives = 57/244 (23%), Gaps = 12/244 (4%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151
            G+LK I+    + +G    +++   L  V     +     +   L+ ++          
Sbjct: 488 DGFLKTINPAWERLLGYSRAELLAKPLAAVIHPDDLAAAGQVIAALQTRDPLQRFENRL- 546

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
           I   N  + +  AA+P         G R + +      + +     ++  K  +      
Sbjct: 547 ITADNNTIWVAWAAVP--------EGDRFYAVGRDVSREREQDEALRQSRKMEAMGQLTG 598

Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRM-KNKVSSLTEYYAHKDDVLKTEKYPLLTS--EESS 268
                       I           +   +   L        D  KT    LL     +  
Sbjct: 599 GVAHDFNNLLTPIVGALDMLQRRGVGGEREQRLIAGAVQSADRAKTLVQRLLAFARRQPL 658

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
            P   D   +              Q                  +       NL     D 
Sbjct: 659 QPVAVDLGLLVAGMGELVASTTGPQIKVVVDAARDLPPAKADPNQLEMAVLNLAVNARDA 718

Query: 329 CPIP 332
            P  
Sbjct: 719 MPDG 722


>gi|317151836|ref|YP_004119884.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316942087|gb|ADU61138.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 533

 Score =  313 bits (803), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 101/549 (18%), Positives = 193/549 (35%), Gaps = 72/549 (13%)

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEI 362
           +    P+    +   +  +   +D       V    G +  AN     L   +SV ++E 
Sbjct: 2   AFTLRPARPTSYVSMDETSRALLDSSMESSLVIDVSGYVLAANLMAANLYGMESVRELEQ 61

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
           A     L      S     +            +  A     + N ++   +        N
Sbjct: 62  ANIYDLLPRDSADSRRERFREA--------IDSVRALRFEEEVNGKS---LVHSIVPVTN 110

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
            + E         +  + R     +  E  +    +E+    +  +  +  I   NR   
Sbjct: 111 PWGEVSRLAINTLDLTELRRTDEDLRREQQRQIFFMESLPGIVYHLYPDRTIRYANRYFR 170

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
           K FG P   +                    +    +             +    +   L+
Sbjct: 171 KYFGSPRGKLCADALNCANTSCIGCPPMESMETDRT--------VEWDWTDARGRTFHLQ 222

Query: 543 IIIKKLPFSSCYSLTM-HDISEWKQEKNKLSHAK-------------------------- 575
                        + +  DI++ K+ ++ L  A                           
Sbjct: 223 CSPMTDSSGERMIMVLGIDITDRKRAEDALKLAHDKSEDKVRRRTRELERANEELTSKSA 282

Query: 576 ------KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
                 K A+  +  KS FLA +SHEIRTPL A++G +E+            R  E    
Sbjct: 283 RLVAAMKKADAATRAKSAFLANMSHEIRTPLNAVLGMAELALR----VQDEARKNECLER 338

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           +  +G  +L ++ND+LD SKIE+ K+ L      L + +  A+ + +L+A +K + +   
Sbjct: 339 VLEAGTSLLTVINDILDFSKIEARKLTLERIDFDLRDILRTALDMHRLHATDKGLGLTAE 398

Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE------------- 735
             +++P  +L D   ++Q+ +N+++NA+ FT +GG + +      ++             
Sbjct: 399 VGDDVPEAVLGDPGRLRQVLVNLVANAVKFTDAGG-VTVRIGLAPDQPADLSGLAPGQPL 457

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            +   V DTG+G+   +     K F Q  +S   +  GTGLGL + K +V+   G   + 
Sbjct: 458 RLRFEVADTGIGIPKRKRRAIFKSFLQADDSITRKHGGTGLGLAICKLLVELMHGSLDVE 517

Query: 796 STPAKGTLI 804
           S   +G+  
Sbjct: 518 SVEGEGSTF 526


>gi|258591510|emb|CBE67811.1| putative Sensor protein [NC10 bacterium 'Dutch sediment']
          Length = 1049

 Score =  313 bits (803), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 112/718 (15%), Positives = 235/718 (32%), Gaps = 91/718 (12%)

Query: 185 HVNRVDNDPRALGKRLDKKFSHLH-EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL 243
            +    N+        + KF  L  +       V+K    + +            +    
Sbjct: 41  RLAGSLNEMLNALAESEAKFRGLVKDAPDAMVLVDKAGRIVLANDEAERLFGYTQQELHG 100

Query: 244 TEYYAHKDDVLKTEKYPLLTSE-----ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE 298
                   + L++       +         +    + + +  +              +K+
Sbjct: 101 APLEMLVPERLRSRHAADRATYLTHPVTRPMGVGLELYGVRKDGREFPVDIKLSHYPAKD 160

Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSV 357
               ++     +     +   +L    ++       +    G + + NP+   LT Y + 
Sbjct: 161 GGIVMAAIRDITARKQAEVQLHLQTTALEAAANGIVITDREGTIVWTNPAATPLTGYTAQ 220

Query: 358 DDIEIAGGLST----------LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
           + I     L             L    L+       ++  R D +       +  ++ +R
Sbjct: 221 ELIGQNLRLLKSDQHDTAFFKTLWETILTGQIWHGEMINRRKDGSLYTEEQTIAPVRDDR 280

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEP------EDVDTRINKRKMEIEVMQL--CSI-- 457
                   I  +   +   +                      + +    + +L   S+  
Sbjct: 281 GQITHFIAIKQDVTARKRADADLAAANAELAQLYATTKDLAARWEALFTLSRLLNRSLEL 340

Query: 458 ------LEATSDGIAIINREGIIL--------------------------STNRAVSKLF 485
                      +     +R G+IL                           TN    +  
Sbjct: 341 DEVFGTFARAVESYVPYDRLGVILPEGDQLIVAYSVAHSPLASHQEQSWPKTNDTAVEWM 400

Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNH--------------------YLTEILSLDLRQTL 525
               E  L +           + +                      +  + L+       
Sbjct: 401 LIHGEPRLTRDLAKEAGFRDETYLAQEGVQSSLSLPLLVGGEVLGVFFLDSLTAGTYAAH 460

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
           +   L    ++  + ++                 ++ E K+ +  +  AK +AE  S  K
Sbjct: 461 DIERLLPLADQVAIVVKHSRLWGSLQRHTEELRREVEERKRAEAAMQQAKSVAEAASRAK 520

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
            +FLA++SHEIRTPL AIIG +E+  +            E+   +  S   +L ++ND+L
Sbjct: 521 GEFLAKMSHEIRTPLNAIIGMTELTLDTALTT----EQREFLQVVQSSSEALLTVINDIL 576

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSV 704
           D+S+IE+G+M +      L E V     ++ + A +K + +       +P R+L D   +
Sbjct: 577 DLSRIEAGQMAIEETAFHLREVVEGVAEVLSIRAQKKGLELTCYVDPALPSRVLGDPMRL 636

Query: 705 KQIALNILSNAIHFTPSGGQIII---STTHTSNEE--VILRVRDTGVGMTNYELEKAMKP 759
           +Q+ +N++ NAI FT  G ++ I    T   +     V + V DTG+G+  ++  +   P
Sbjct: 637 RQVLVNLVGNAIKFTERG-EVTIQVERTQVEAPGRIGVHISVADTGIGIPTHQQARIFDP 695

Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
           F Q   +   R  G+GLGL ++KA+++   G+ ++ S   KG+       +   + P 
Sbjct: 696 FAQADATTARRFGGSGLGLSISKALMELMGGRIWVESEVGKGSTFHCDL-VVTVAEPE 752



 Score =  121 bits (303), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 48/333 (14%), Positives = 101/333 (30%), Gaps = 23/333 (6%)

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA-----YFDEGENLTPE 324
           P       I+  +         + +    +   +      + S         E E     
Sbjct: 3   PSLHPASAIDELKRLAASLDECIVSKCPAAPRVVDELGRLAGSLNEMLNALAESEAKFRG 62

Query: 325 TVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
            V   P     V   G +  AN     L  Y   +       L  L+     S + A + 
Sbjct: 63  LVKDAPDAMVLVDKAGRIVLANDEAERLFGYTQQELHGAP--LEMLVPERLRSRHAADRA 120

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENS-LAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             L       +     L+ ++ +     + +    +   +             +    + 
Sbjct: 121 TYLTHPVTRPMGVGLELYGVRKDGREFPVDIKLSHYPAKDGGI----VMAAIRDITARKQ 176

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            + ++ ++     + LEA ++GI I +REG I+ TN A + L GY  ++++ +   +   
Sbjct: 177 AEVQLHLQT----TALEAAANGIVITDREGTIVWTNPAATPLTGYTAQELIGQNLRLLKS 232

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTM 558
               +     L E +     Q      +   K+  L +    I  +         +    
Sbjct: 233 DQHDTAFFKTLWETILTG--QIWHGEMINRRKDGSLYTEEQTIAPVRDDRGQITHFIAIK 290

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
            D++  K+    L+ A     +  +   D  AR
Sbjct: 291 QDVTARKRADADLAAANAELAQLYATTKDLAAR 323



 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/255 (10%), Positives = 67/255 (26%), Gaps = 29/255 (11%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D  G +   ++E  +  G    ++ G  L  +       P          + T+     
Sbjct: 74  VDKAGRIVLANDEAERLFGYTQQELHGAPLEMLV------PERLRSRHAADRATYLTHPV 127

Query: 149 LWP-----------IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG 197
             P            +G    V I L+  P         G      +             
Sbjct: 128 TRPMGVGLELYGVRKDGREFPVDIKLSHYPAKD------GGIVMAAIRDITARKQAEVQ- 180

Query: 198 KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR-MKNKVSSLTEYYAHKDDVLKT 256
             L  + + L     G    ++E   +++  +  P       ++          D     
Sbjct: 181 --LHLQTTALEAAANGIVITDREGTIVWTNPAATPLTGYTAQELIGQNLRLLKSDQHDTA 238

Query: 257 EKYPLLTS--EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
               L  +         +      + + YT++Q    ++++  +   +++ +   +    
Sbjct: 239 FFKTLWETILTGQIWHGEMINRRKDGSLYTEEQTIAPVRDDRGQITHFIAIKQDVTARKR 298

Query: 315 FDEGENLTPETVDKC 329
            D         + + 
Sbjct: 299 ADADLAAANAELAQL 313


>gi|167762689|ref|ZP_02434816.1| hypothetical protein BACSTE_01047 [Bacteroides stercoris ATCC
           43183]
 gi|167699029|gb|EDS15608.1| hypothetical protein BACSTE_01047 [Bacteroides stercoris ATCC
           43183]
          Length = 906

 Score =  313 bits (803), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 108/497 (21%), Positives = 194/497 (39%), Gaps = 27/497 (5%)

Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
           F     G L +AN  F         DD+     +  +    +  +N+  + +   R    
Sbjct: 263 FAAREDGTLVFANRRFREHHNISITDDVSTLN-IYRINANAQQDENSWQRLIKSLRK-GE 320

Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
                   H +       LAM    +   +   E +   G   +      N+++++    
Sbjct: 321 KRNGFILYHPLP-EHPEVLAMEGSAYWVTSDKGEAILW-GFSRDITQRIRNEQQIKRFSQ 378

Query: 453 QLCSILEATSDGIAIINRE--GIILSTNR-AVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
            L   +E    GI + + +     L  NR + ++    P+++ L K    F         
Sbjct: 379 ILDKTIENLPAGIVVKDIQSGFKYLYRNRESYNR--NIPLKEALGKDDFDFYPPELAQEK 436

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH-DISEWKQEK 568
                EI    + +           +   L  R +  +        L++  DI+E ++ K
Sbjct: 437 RKQDVEIARTGIEKHWITEEHDQNGKSIFLDKRKVRIESNDFPPILLSIEWDITEMERMK 496

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
            +L  AK+ AE     KS FLA +SHEIRTPL AI+GFS +I               Y +
Sbjct: 497 RELLVAKEKAETSDQLKSAFLANMSHEIRTPLNAIVGFSRIIAE----STDAEERQNYYD 552

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            ++ +   +L ++N++LD+SKIE+G +     PV L     E    ++    E  + +  
Sbjct: 553 IVEANNERLLQLINEILDLSKIEAGIVEFTITPVRLHPLCKEIHDALKFRCPE-GVELVY 611

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-EVILRVRDTGVG 747
             ++    +  D   + Q+  N++ NA  FT  G    +   +     E+   V DTG+G
Sbjct: 612 EASDEEITVEGDKNRIFQVISNLIGNAFKFTTRGS---VGYGYRRKGNEIEFYVSDTGIG 668

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           +   +L K  + F ++        +GTGLGL + K +++   G   + S   KGT     
Sbjct: 669 IQTDKLAKVFERFVKVNTF----AQGTGLGLSICKTIIERLGGTISVCSEVGKGTTFTFT 724

Query: 808 FPLY----DTSHPHDCI 820
            PL     +T+   + +
Sbjct: 725 LPLAKDKRETAEEQNSV 741



 Score = 47.7 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 40/128 (31%), Gaps = 5/128 (3%)

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           +LE TSD + +++R GI +      + L+      +L +     L   T   +     ++
Sbjct: 14  LLELTSDTMILLDRNGICVDIAVHNADLWFLKENQLLGRNILQLLPSVTYRQVYPEFKKV 73

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKK 576
           L+                          I + P+         DI+E  Q K +L     
Sbjct: 74  LAYKEVSARNYELTI----GSETYFFKCIMR-PYEDMVLCQYRDITERSQRKRELEKKNH 128

Query: 577 IAEKESSH 584
              +    
Sbjct: 129 ELNEIQKA 136



 Score = 43.9 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 17/176 (9%), Positives = 46/176 (26%), Gaps = 20/176 (11%)

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
           TF      +             +    R        ++  L   +  +++ I     +G 
Sbjct: 218 TFSHETLPDGTGILEGYIQNITDIQQRR-------NDITLLTHAINNSTEDIFAAREDGT 270

Query: 474 ILSTNRAVSKLFGYP-VEDILRKPFTVF--LEQNTPSVMNHYLTEILSLDLR------QT 524
           ++  NR   +       +D+            Q   +     +  +   + R        
Sbjct: 271 LVFANRRFREHHNISITDDVSTLNIYRINANAQQDENSWQRLIKSLRKGEKRNGFILYHP 330

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
           L +       E     +          +       DI++  + + ++    +I +K
Sbjct: 331 LPEHPEVLAMEGSAYWV----TSDKGEAILWGFSRDITQRIRNEQQIKRFSQILDK 382


>gi|167763266|ref|ZP_02435393.1| hypothetical protein BACSTE_01639 [Bacteroides stercoris ATCC
           43183]
 gi|167698560|gb|EDS15139.1| hypothetical protein BACSTE_01639 [Bacteroides stercoris ATCC
           43183]
          Length = 624

 Score =  313 bits (803), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 103/519 (19%), Positives = 191/519 (36%), Gaps = 46/519 (8%)

Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSVDDIEIAGGLSTL 369
            +    + E L        P+   VY+   +    N   L +   +  +D+         
Sbjct: 125 ATQMLRQREQLLHNIYKHLPVGIEVYNTDGVLTDLNDKELEMFHLQRKEDLLGINIFDNP 184

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI-----QWNRENSLAMTFIPFEKANQF 424
           +   ++ +        L + +            +        R  ++ +        ++ 
Sbjct: 185 IFPKEMKEK-------LKKYEDADFTFRYDFSKVGSYYNPQTRTGTIDLVTKVTTLYDEN 237

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN---REGIILSTNRAV 481
                   I  +  +T +   K++        I      G A  +   R+G         
Sbjct: 238 HTPANYLLINADKTETTVAYNKIQEFESFFELIGNYAKVGYAHYDLLTRQGD-------A 290

Query: 482 SKLFGYPVEDILRKPFTVFL------EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
              +   + +    P +  +             M  +L       +     K      ++
Sbjct: 291 QHSWYINIGEQEGTPLSRIIGVYRHIHPEDRRAMLGFLNNAAK-GMEDKFNKEVRVLRED 349

Query: 536 EKLLSLRI-----IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
                  +            S       +DI+  K  +  L  AK+ AE+    KS FLA
Sbjct: 350 GSYTWTHVNLIVKTYAPERNSIELICINYDITRLKATEAMLIDAKEKAEESDRLKSAFLA 409

Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650
            +SHEIRTPL AIIGFS ++               Y + I+ +  L+L+I+ND+LD+SKI
Sbjct: 410 NMSHEIRTPLNAIIGFSSLL----PHIEDAEERNHYISLINHNNELLLNIINDVLDLSKI 465

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710
           E+G + L     +L + + E+ +  Q    E  + ++  +      I  D   +KQ+  N
Sbjct: 466 EAGHIELSPVWCNLSDLIDESCTECQPNVPE-GVTLKKRYPATPNLIKQDPMRIKQVLSN 524

Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           ++SNA+  T  G  + IS   T +E   + V DTG G+   +L    + F +        
Sbjct: 525 LISNALKNTVQG-YVEISYETTPSET-RISVSDTGRGIPEEKLGIIFERFEKTDAFI--- 579

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            +G GLGLP+ +++++   G   + ST  KG+   ++FP
Sbjct: 580 -QGAGLGLPICRSIMEHMNGTIEVTSTVNKGSTFTVVFP 617


>gi|307592105|ref|YP_003899696.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306985750|gb|ADN17630.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 816

 Score =  313 bits (803), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 99/571 (17%), Positives = 208/571 (36%), Gaps = 69/571 (12%)

Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKY 354
            +      +     +        +      ++   +  + + + G L  ANP+FL L   
Sbjct: 110 VRLPAAVQAALERVAAQVKAANLQTRIQTLLNHLNVGIYRLTAKGLLLEANPAFLRLLGL 169

Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
           +S+ +I     L           ++  + +     +        +L   +     +  + 
Sbjct: 170 QSITEIPSTHSLQAYF-----EPDHYTELLAQLTQNGEAQEREIQL---RCADGGTRWVK 221

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC------SILEATSDG---- 464
                   Q   ++   G+  +  + +  + + E E  +         +  ++ D     
Sbjct: 222 IS--TTFTQESSDIIIEGLMEDITERKQAQARAETEKQRFQFLANASRLFASSLDYHLTL 279

Query: 465 -------------IAIIN----------------------------REGIILSTNRAVSK 483
                        I +I+                            R+   LS +    K
Sbjct: 280 KNLVNLVVPTLADICVIDLVEPTKLVFDEPIVAATDPSLSALMLELRQNYPLSADYGAVK 339

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           L      ++  K +         +    +LT +  L ++ ++    +   +    ++L  
Sbjct: 340 LLNINQSEL--KHYVSSSVWQEIAQDARHLTILQKLGIQASMAVPMIVHDRNFGTITLIS 397

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
                 +         +++         ++  + A++ +  K +FLA VSHE+R PL A+
Sbjct: 398 TKTSRTYDHTDLALAQELARRAAIALDNAYLYQQAQQANQIKDEFLAIVSHELRNPLNAM 457

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +G+S+++  + F    +    +    I+R+  L   ++ DLLDIS+I   ++++  EPV 
Sbjct: 458 LGWSQLLHKREF---EDTMVNQAITIIERNALLQKKLIEDLLDISRIIQNRLHISREPVY 514

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
           L   +   I  ++     K I I ++   +   +  D   ++QI  N+LSNAI FT +GG
Sbjct: 515 LIPLIDTVIDTLRPNIKAKAIEISSNLDTSTKPVFGDAYRLEQIVGNLLSNAIKFTSTGG 574

Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
           +I +  +        + V DTG G++   L    + F Q   S+     G GLGL + + 
Sbjct: 575 KINVQLS-QEGSLAKITVADTGQGISPEFLPFIFERFRQADPSKTRSQSGLGLGLAIVRH 633

Query: 784 MVDANMGKFYIFS-TPAKGTLIEIIFPLYDT 813
           +V+ + G  Y  S    KG    +  P  D+
Sbjct: 634 LVELHGGSVYAASPGVGKGATFIVQLPTQDS 664



 Score = 76.2 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/170 (14%), Positives = 53/170 (31%), Gaps = 13/170 (7%)

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
             +         ++    + K      ++ ++L   + GI  +  +G++L  N A  +L 
Sbjct: 108 HYVRLPAAVQAALERVAAQVKAANLQTRIQTLLNHLNVGIYRLTAKGLLLEANPAFLRLL 167

Query: 486 GYPV--EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           G     E         + E +        L ++      Q  E     +    + + +  
Sbjct: 168 GLQSITEIPSTHSLQAYFEPDH---YTELLAQLTQNGEAQEREIQLRCADGGTRWVKIST 224

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
              +          M DI+E KQ + +         +    +  FLA  S
Sbjct: 225 TFTQESSDIIIEGLMEDITERKQAQARA--------ETEKQRFQFLANAS 266



 Score = 45.4 bits (106), Expect = 0.039,   Method: Composition-based stats.
 Identities = 36/391 (9%), Positives = 93/391 (23%), Gaps = 26/391 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL-KRQNTWY 144
            + + A G L E +    + +G  +   I      +      D    +   L +      
Sbjct: 147 IYRLTAKGLLLEANPAFLRLLGLQSITEIPSTHS-LQAYFEPDHYTELLAQLTQNGEAQE 205

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            +  L   +G      + ++       +         G++         +A  +   ++F
Sbjct: 206 REIQLRCADGGTR--WVKISTTFTQESSDIII----EGLMEDITERKQAQARAETEKQRF 259

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
             L    +  +S       + +  +          V  L E              P++ +
Sbjct: 260 QFLANASRLFASSLDYHLTLKNLVNLVVPTLADICVIDLVEP------TKLVFDEPIVAA 313

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE-NLTP 323
            + SL         N            L  N  E   Y+S      ++            
Sbjct: 314 TDPSLSALMLELRQNYPLSADYGAVKLLNINQSELKHYVSSSVWQEIAQDARHLTILQKL 373

Query: 324 ETVDKCPIPFFVYSH--GNLFYANPSFLLLTKYKSVDDIEIAGGLST-------LLDAPK 374
                  +P  V+    G +   +        +  +   +     +        L    +
Sbjct: 374 GIQASMAVPMIVHDRNFGTITLISTKTSRTYDHTDLALAQELARRAAIALDNAYLYQQAQ 433

Query: 375 LSDNNAIKPVMLYRSD--RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
            ++    + + +   +      A       +         +                   
Sbjct: 434 QANQIKDEFLAIVSHELRNPLNAMLGWSQLLHKREFEDTMVNQAITIIERNALLQKKLIE 493

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
              +      N+  +  E + L  +++   D
Sbjct: 494 DLLDISRIIQNRLHISREPVYLIPLIDTVID 524


>gi|319784578|ref|YP_004144054.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
 gi|317170466|gb|ADV14004.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 577

 Score =  313 bits (803), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 129/493 (26%), Positives = 200/493 (40%), Gaps = 21/493 (4%)

Query: 331 IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS---TLLDAPKLSDNNAIKPVMLY 387
           +   V + G +  A+   L+L        I  AGGLS    +L      +   I      
Sbjct: 60  VALLVAATGKMAIASWVALVLAGISLGSLIAAAGGLSSPVAMLVVALPFEAWWIGASRRA 119

Query: 388 RSDRTCIAASARLHT----IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
                  AA A L        +    +    +            +P+        D    
Sbjct: 120 ALWGAVSAAVAILAQPLAGTVFPFAGAQIAAWHWLVPLAWTLTLIPRASAFQNTAD---- 175

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
              +     +L  I++A    +  + R G +L  +     L   P E +        +  
Sbjct: 176 AADVLDTADRLEDIIDAV---VLRVARHGEVLDASPKARTLLKLPPELLSGNGLFDRVHL 232

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLG-STKEE----KLLSLRIIIKKLPFSSCYSL-T 557
           +        + ++    L + LE                     + + +           
Sbjct: 233 SDRVSYLSAMADMRDGALSRRLELRIRLPQNGNGLTADNYRPFSLDLVRGEEQGDVFTFV 292

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
           +    E  + +  L+ A + A      K  FLA VSHE+RTPL AIIGFS+++ ++ FG 
Sbjct: 293 LRQNDEIARLREDLAAANEAAASAEVAKGRFLAVVSHELRTPLNAIIGFSDMLLHEMFGA 352

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
             +PR  EY   +  SG  +L +V  +LD+S+IESG      EP    EAV    S++QL
Sbjct: 353 FKDPRQKEYVGLVRDSGQHLLAVVTSILDVSRIESGVYATEPEPFRFAEAVDMCQSMMQL 412

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737
            A  K I ++   A +   I AD R+V+Q+ +N++SNAI FTP GG +++         +
Sbjct: 413 QAQAKNIDLQAQIAPDAGDINADQRAVQQMLINLVSNAIKFTPDGGDVVVGAKRI-GSRL 471

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
              VRDTG+G+   +     KPF QI N    R EGTGLGL L K +V  + G   I S 
Sbjct: 472 HFWVRDTGIGIAEEDFANLGKPFMQIQNDYTRRFEGTGLGLSLVKGLVALHEGTMSIESM 531

Query: 798 PAKGTLIEIIFPL 810
           P +GT + I  P+
Sbjct: 532 PGEGTTVTISLPV 544


>gi|302344107|ref|YP_003808636.1| PAS/PAC sensor hybrid histidine kinase [Desulfarculus baarsii DSM
           2075]
 gi|301640720|gb|ADK86042.1| PAS/PAC sensor hybrid histidine kinase [Desulfarculus baarsii DSM
           2075]
          Length = 1027

 Score =  313 bits (803), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 103/745 (13%), Positives = 239/745 (32%), Gaps = 51/745 (6%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151
            G L  +++ +   +G    +++G    ++     +           R  +         
Sbjct: 175 EGRLCYLNKSMAAMLGYEPEELLGHGFHELIHPADLPIVLERHYSRLRGGSPPNVYPFRL 234

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
           +   N     +L  + I       +      ++       +     +  ++++  L +  
Sbjct: 235 VAKDNRVRWAELKTV-IIDWEGRPATLN---LMRDITDRRNIEQALRDGERRYQALADAT 290

Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271
                + +    + + ++        +      ++     D    E    + S  S+ P 
Sbjct: 291 FESVLIVERGRCVEANKTALAMFGYDHDQLLERDFCDLFADTACQEIRRFMQSG-SAEPM 349

Query: 272 QEDFHTINLNQYTKKQ--YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
           + +    +   +  +      + Q  +           + +        E      ++  
Sbjct: 350 EAEARRGDGGFFWAEVCCRQASYQGQAVTVCAVRDVTANKTAQIELRRSEATIRGILNAA 409

Query: 330 PI--PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
           PI     V +   L ++N     +T + SV+++E     S L    +  +        L 
Sbjct: 410 PIAIGIMVGAERVLGWSNKMMSEMTGF-SVEELEGMP-ASGLYPDSQEYERVGRLRRELL 467

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
            +       S      + +      +        +   + +    +  +    +  ++ +
Sbjct: 468 PATGL---GSGETVWRRKDGALIDVLLSGALLNPDDMADGLVYTAL--DITQRKKTEQAL 522

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI-LRKPFTVFLEQNTP 506
           +    +L  I+E    G  + + +   L  N+AV  + G+   D+         +    P
Sbjct: 523 KDNEERLRKIVEGLPLGAVLRDGDR--LYANKAVEDITGWARADLATVADCFARIFVEEP 580

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQ 566
                   +  S D    +         + + +                  + D++E  +
Sbjct: 581 ERFAALYDKFRSSDGPSKMVVNITRRDGQRRAVEFSSS----KEGENELWLLRDVTEETK 636

Query: 567 EKNKLSHAKKIAEKES--SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
              + +  +                  ++H+    L AIIGF+E+          NP   
Sbjct: 637 AAEEKARLESQLRHAQKMEALGTLAGGIAHDFNNILAAIIGFTELAVEGHQEGQVNPAD- 695

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
                + RS     ++V  +L  S+    +      P+ L++ + + + L++     K I
Sbjct: 696 --LKQVLRSAERARELVRQILAFSR----QTEAELRPMDLNKQLGQTVELLKCTLP-KMI 748

Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT-------------- 730
            + T  + + P +LA+   ++Q+ LN+ +NA    P GG++I  T               
Sbjct: 749 SVETILSGDAPLVLANNNQIEQLLLNLANNARDAMPEGGRLIFETESAMLDDEFCQHHVG 808

Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
                 V+L+V DTG GM    L +   PF     S +  G GTGLG+     +V  + G
Sbjct: 809 LEPGAYVLLKVSDTGHGMDAKTLSRMYDPFF----STKEVGRGTGLGMSTVYGIVKGHRG 864

Query: 791 KFYIFSTPAKGTLIEIIFPLYDTSH 815
               +S P +GT+  +  P+     
Sbjct: 865 HISCYSEPGRGTIFRVYLPVSPAGQ 889



 Score =  123 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 60/497 (12%), Positives = 144/497 (28%), Gaps = 29/497 (5%)

Query: 95  LKEISEELPKTIGNYA-FKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIE 153
           +   ++E  +  G  A   M    +         D       L+  ++ ++ +      +
Sbjct: 53  VTFWNDECARVTGYDAVEAMANRDMAARLCPEGHDRQRLREILVTPEDDFHEREFSLKTK 112

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
              L     +A   I SR+    G+  + +              +  ++KF  L +    
Sbjct: 113 DGALK---TIAWSNI-SRSFPVEGWASWVVGVDVSGRRAAETALRISEEKFHTLVDSAVE 168

Query: 214 HSSVEKEKYD--IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271
             +V +E     +    +       +  +        H  D+    +         S P 
Sbjct: 169 GINVAQEGRLCYLNKSMAAMLGYEPEELLGHGFHELIHPADLPIVLERHYSRLRGGSPPN 228

Query: 272 QEDFHTINLNQYTKKQYFGTLQNNSKESFEYL----SHRNHPSLSAYFDEGENLTPETVD 327
              F  +  +   +     T+  + +     L       +  ++     +GE       D
Sbjct: 229 VYPFRLVAKDNRVRWAELKTVIIDWEGRPATLNLMRDITDRRNIEQALRDGERRYQALAD 288

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
                  +   G    AN + L +  Y     +E             L  + A + +  +
Sbjct: 289 ATFESVLIVERGRCVEANKTALAMFGYDHDQLLERDFC--------DLFADTACQEIRRF 340

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
               +     A     + +     A               +       +    +  + ++
Sbjct: 341 MQSGSAEPMEAEAR--RGDGGFFWAEVCCRQASYQGQAVTVCA---VRDVTANKTAQIEL 395

Query: 448 EIEVMQLCSILEATSDGI-AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
                 +  IL A    I  ++  E ++  +N+ +S++ G+ VE++   P +     +  
Sbjct: 396 RRSEATIRGILNAAPIAIGIMVGAERVLGWSNKMMSEMTGFSVEELEGMPASGLYPDSQE 455

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII---IKKLPFSSCYSLTMHDISE 563
                 L   L L         T+   K+  L+ + +    +     +     T  DI++
Sbjct: 456 YERVGRLRREL-LPATGLGSGETVWRRKDGALIDVLLSGALLNPDDMADGLVYTALDITQ 514

Query: 564 WKQEKNKLSHAKKIAEK 580
            K+ +  L   ++   K
Sbjct: 515 RKKTEQALKDNEERLRK 531



 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 39/387 (10%), Positives = 95/387 (24%), Gaps = 25/387 (6%)

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT----EYYAHKDDVL 254
           RL      +                +         +   + V ++           +   
Sbjct: 28  RLTGGILRMARQMPILLLGFGLDGLVTFWNDECARVTGYDAVEAMANRDMAARLCPEGHD 87

Query: 255 KTEKYPLLTSEESSLPEQEDFH----TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310
           +     +L + E    E+E                                 +      +
Sbjct: 88  RQRLREILVTPEDDFHEREFSLKTKDGALKTIAWSNISRSFPVEGWASWVVGVDVSGRRA 147

Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
                   E      VD       V   G L Y N S   +  Y+  + +    G   L+
Sbjct: 148 AETALRISEEKFHTLVDSAVEGINVAQEGRLCYLNKSMAAMLGYEPEELLGH--GFHELI 205

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
               L          L                +  +     A            P  +  
Sbjct: 206 HPADLPIVLERHYSRLR---GGSPPNVYPFRLVAKDNRVRWAELKTVIIDWEGRPATLN- 261

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490
             +  +  D R  ++ +     +  ++ +AT + + I+   G  +  N+    +FGY  +
Sbjct: 262 --LMRDITDRRNIEQALRDGERRYQALADATFESVLIV-ERGRCVEANKTALAMFGYDHD 318

Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
            +L + F           +  ++         + +E        +       +  ++  +
Sbjct: 319 QLLERDFCDLFADTACQEIRRFMQS----GSAEPMEAE--ARRGDGGFFWAEVCCRQASY 372

Query: 551 SSCYSLT--MHDISEWKQEKNKLSHAK 575
                    + D++  K  + +L  ++
Sbjct: 373 QGQAVTVCAVRDVTANKTAQIELRRSE 399


>gi|298530365|ref|ZP_07017767.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509739|gb|EFI33643.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 645

 Score =  313 bits (802), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 84/452 (18%), Positives = 180/452 (39%), Gaps = 16/452 (3%)

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
             +L   ++   +  +     + D           +   +   S  +        +   +
Sbjct: 53  DLILLDIRMPGMDGFEVCRKLKQDPDLQDIPVIFISALQD--VSDKVQAYNTGGVDYVSK 110

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
                 +           R +         ++E   D I   +R+   +S +  +  L  
Sbjct: 111 PFQPEEVYARVETHLRLNRLLRESEESRRVLIEELPDIIVRFDRQARHVSVSDNIRDLGI 170

Query: 487 YPVEDILRKPFTVF-LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
               + + +        ++        +  +         E        E  + ++R++ 
Sbjct: 171 TEPGEYIGRTHRELGYSESCCRFWEKSIATVFDSGEPLEEEMSLYSGDNEGLIHNVRMVP 230

Query: 546 KKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
           ++    +         DI+  KQ +  L +AKK AE  +  K++FLA +SHEIRTPL  I
Sbjct: 231 ERDSSGNIVTVLAISRDITLQKQAQQALLNAKKDAEAANQSKNEFLANMSHEIRTPLNGI 290

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
            G  +++ +       N    ++     ++   + ++++D+LD+S++E+G+ ++     +
Sbjct: 291 EGMMQMLLSTPL----NSEQQKFIEMGHQASRRMTELLSDILDLSRLEAGREDVSKRTFN 346

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSG 722
           L +       L+ + + EK I +  + + ++P  ++ D   V+QI  N++ NA+ FT  G
Sbjct: 347 LKDVCDSLWDLLGIKSREKGIPLTFNLSPSLPDTLMGDSTMVRQILFNLVGNALKFTEHG 406

Query: 723 GQIIIST-----THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
            Q+ +       +H    +V+  V DTG G+ + + ++  KPF  +  S   + EG GLG
Sbjct: 407 -QVTLDIHPLPQSHQDQLQVLFTVSDTGPGIPDDKQDRIFKPFDMVNGSLTRKHEGKGLG 465

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           L +   +     G   + S   +GT I +  P
Sbjct: 466 LTVTHRLAKLMGGTISVDSAEGQGTSIYVTLP 497



 Score = 43.9 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 11/140 (7%), Positives = 32/140 (22%), Gaps = 6/140 (4%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP--NNHIGDLLKRQNTWYG 145
             D       +S+ +         + IG    ++             I  +         
Sbjct: 151 RFDRQARHVSVSDNIRDLGITEPGEYIGRTHRELGYSESCCRFWEKSIATVFDSGEPLEE 210

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           + +L+  +   L   + +  +P    +          I     +    +       K   
Sbjct: 211 EMSLYSGDNEGLIHNVRM--VPERDSSGNIVTV--LAISRDITLQKQAQQALLNAKKDAE 266

Query: 206 HLHEIKKGHSSVEKEKYDIF 225
             ++ K    +    +    
Sbjct: 267 AANQSKNEFLANMSHEIRTP 286


>gi|262051886|ref|ZP_06024101.1| two-component sensor histidine kinase [Staphylococcus aureus
           930918-3]
 gi|259160213|gb|EEW45242.1| two-component sensor histidine kinase [Staphylococcus aureus
           930918-3]
          Length = 608

 Score =  313 bits (802), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 79/388 (20%), Positives = 172/388 (44%), Gaps = 29/388 (7%)

Query: 426 ENMPQNGIEPEDVDTRINKRKM--EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           + + +  +   ++  R+ + +   E E  +L S++   SDGI   +R G I   N    K
Sbjct: 235 DEIGELALAFNNLSKRVQEAQANTESEKRRLDSVITHMSDGIIATDRRGRIRIVNDMALK 294

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           + G   EDI+       L       +        S  L    E+  +        ++   
Sbjct: 295 MLGMAKEDIIGYYMLSVLSLEDEFKLEEIQENNDSFLLDLNEEEGLIAR------VNFST 348

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
           I+++  F + Y   +HD++E +Q + +              + +F+A VSHE+RTPLT++
Sbjct: 349 IVQETGFVTGYIAVLHDVTEQQQVERE--------------RREFVANVSHELRTPLTSM 394

Query: 604 IGFSEVIKNQRFGPLGNPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
             + E ++    G   +     ++ +        ++ +VNDLL +SK+++    ++ E +
Sbjct: 395 NSYIEALEE---GAWKDEELAPQFLSVTREETERMIRLVNDLLQLSKMDNESDQINKEII 451

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
             +  +++ I+  ++ A  K                 D   + Q+  N+++NA+ ++   
Sbjct: 452 DFNMFINKIINRHEMSA--KDTTFIRDIPKKTIFTEFDPDKMTQVFDNVITNAMKYSRGD 509

Query: 723 GQIIISTTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
            ++            + +R++D G+G+   +++K    F ++  ++  +  GTGLGL ++
Sbjct: 510 KRVEFHVKQNPLYNRMTIRIKDNGIGIPINKVDKIFDRFYRVDKARTRKMGGTGLGLAIS 569

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           K +++A+ G+ +  S   +GT I I  P
Sbjct: 570 KEIMEAHNGRIWANSVEGQGTSIFITLP 597


>gi|229142214|ref|ZP_04270738.1| hypothetical protein bcere0013_52990 [Bacillus cereus BDRD-ST26]
 gi|229199594|ref|ZP_04326255.1| hypothetical protein bcere0001_50920 [Bacillus cereus m1293]
 gi|228583999|gb|EEK42156.1| hypothetical protein bcere0001_50920 [Bacillus cereus m1293]
 gi|228641232|gb|EEK97539.1| hypothetical protein bcere0013_52990 [Bacillus cereus BDRD-ST26]
          Length = 588

 Score =  313 bits (802), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 84/372 (22%), Positives = 158/372 (42%), Gaps = 25/372 (6%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +  +   E E  +L S+L   +DG+   +R+G I+  N    K+     E  L +     
Sbjct: 233 QQARSSTESERRKLSSVLSHMTDGVIATDRKGDIILLNDPAEKMLNVSRETALDQSVLEV 292

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
           L       ++H   E  S+ L  +                  +I K+   ++     ++D
Sbjct: 293 LGIQEEFTLDHLYEEPDSVLLDFSTRNEPYILRAS-----FSVIQKETGKANGLIAVLYD 347

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           ++                E+    + +F+A VSHE+RTPLT +  + E + +  +     
Sbjct: 348 VT--------------EQERIERERREFVANVSHELRTPLTTMRSYLEALTDGAWQDPNI 393

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
                +          ++ +VN LL +SK++S +  L  E V   +  +  I   +  + 
Sbjct: 394 APQ--FLTVTQEETERMIRLVNALLQLSKLDSTEHRLMKEWVDFTDFFNNIIDRFE-MSK 450

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV-IL 739
           E+ +  + SF+     I  D   + Q+  NI+SNA+ ++P GG +          E+  +
Sbjct: 451 EQNVSFKRSFSKKSRFIDMDTDKITQVLYNIISNALKYSPEGGTVT--YRLRDRGELLEI 508

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V D G+G+    ++K  + F ++  ++  +  GTGLGL +AK M++A+ G  +  S   
Sbjct: 509 SVSDQGMGIPKENVDKIFERFYRVDKARSRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEG 568

Query: 800 KGTLIEIIFPLY 811
           KGT I    P+ 
Sbjct: 569 KGTTIYFTLPMA 580


>gi|114769184|ref|ZP_01446810.1| sensory box histidine kinase/response regulator [alpha
           proteobacterium HTCC2255]
 gi|114550101|gb|EAU52982.1| sensory box histidine kinase/response regulator [alpha
           proteobacterium HTCC2255]
          Length = 843

 Score =  313 bits (802), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 91/421 (21%), Positives = 175/421 (41%), Gaps = 22/421 (5%)

Query: 403 IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
           + W   ++++   +           +       +         ++     QL   +  + 
Sbjct: 176 LMWTGGSAVSFLIMLAGLLLLLDRMLRSAIRRAD---------ELTASSRQLALTVAGSM 226

Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ----NTPSVMNHYLTEILS 518
           D I I +    I+  N +   +FG+  ++I+ +     L      +         +E+ +
Sbjct: 227 DAIIIADGYSKIIEYNTSAEGVFGWSRKEIIGRTMEEILFPKGLRDAYKNAMAQSSEVTN 286

Query: 519 LDLRQTLEKITLGSTKEEKLLSLR--IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKK 576
            +    +        K  +   +   +   +    + Y   + DIS+ K  +  L  A+ 
Sbjct: 287 TNAVDGVRVELTAWRKNGEEFEVELNMTYVERNDDAIYMAYIRDISDRKVAEKILIEARD 346

Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
            AE+    KS FLA +SHE+RTPL  IIG  +++K          +   Y      SG +
Sbjct: 347 RAERTDKAKSQFLAVMSHEMRTPLAGIIGVMDLLKATNLSK----KQDHYVQIATSSGEV 402

Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI-P 695
           +L+ +N+ LDI++IE G   L  +  +L +     + +++  ANEK + +     +NI  
Sbjct: 403 MLEHINEALDITRIEGGAFELSPQEFNLPDLARSLVEVLKPLANEKELSLELQIDDNIKA 462

Query: 696 RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSN-EEVILRVRDTGVGMTNYEL 753
             L D   ++QI  N+L N+I FT  G  Q +IS +H ++   +   + DTG+G+     
Sbjct: 463 YFLGDSHRIRQILTNLLGNSIKFTDEGSIQFVISCSHEADVSRLKFTITDTGLGIAPENH 522

Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
           EK  + F  I +  + +  G GLGL +++ +     G   + S   +G    +  PL   
Sbjct: 523 EKIFEDFVAISSGDERQSRGDGLGLSISRKIARQMGGDIIVESNINEGATFILNLPLKQV 582

Query: 814 S 814
           +
Sbjct: 583 A 583



 Score = 41.2 bits (95), Expect = 0.76,   Method: Composition-based stats.
 Identities = 36/382 (9%), Positives = 92/382 (24%), Gaps = 25/382 (6%)

Query: 91  AHG--YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNT------ 142
           A G   + E +       G    ++IG  + ++     +            + T      
Sbjct: 232 ADGYSKIIEYNTSAEGVFGWSRKEIIGRTMEEILFPKGLRDAYKNAMAQSSEVTNTNAVD 291

Query: 143 -WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
               + T W   G    V +++  +                 +           +     
Sbjct: 292 GVRVELTAWRKNGEEFEVELNMTYVERNDD------AIYMAYIRDISDRKVAEKILIEAR 345

Query: 202 KKFSHLHEIKKGHSSVEKEKYD-----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256
            +     + K    +V   +       I           +  K     +      +V+  
Sbjct: 346 DRAERTDKAKSQFLAVMSHEMRTPLAGIIGVMDLLKATNLSKKQDHYVQIATSSGEVMLE 405

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
                L          E            +     L+  + E    L  +   ++ AYF 
Sbjct: 406 HINEALDITRIEGGAFELSPQEFNLPDLARSLVEVLKPLANEKELSLELQIDDNIKAYFL 465

Query: 317 EGENLTPETV-DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
              +   + + +           G++ +     +  +    V  ++     + L  AP+ 
Sbjct: 466 GDSHRIRQILTNLLGNSIKFTDEGSIQFV----ISCSHEADVSRLKFTITDTGLGIAPEN 521

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
            +      V +   D           +I       +    I     N+    +    ++ 
Sbjct: 522 HEKIFEDFVAISSGDERQSRGDGLGLSISRKIARQMGGDIIVESNINEGATFILNLPLKQ 581

Query: 436 EDVDTRINKRKMEIEVMQLCSI 457
                 +  + ++I +     I
Sbjct: 582 VAKTDVVEPKALDIPIENFKKI 603


>gi|255526178|ref|ZP_05393098.1| multi-sensor signal transduction histidine kinase [Clostridium
           carboxidivorans P7]
 gi|296185072|ref|ZP_06853482.1| PAS domain S-box domain-containing protein [Clostridium
           carboxidivorans P7]
 gi|255510161|gb|EET86481.1| multi-sensor signal transduction histidine kinase [Clostridium
           carboxidivorans P7]
 gi|296049906|gb|EFG89330.1| PAS domain S-box domain-containing protein [Clostridium
           carboxidivorans P7]
          Length = 606

 Score =  313 bits (802), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 90/396 (22%), Positives = 161/396 (40%), Gaps = 23/396 (5%)

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490
             +E E  +    +  +     Q    +E     + I   +G I++ N+    + GY ++
Sbjct: 182 VMLEEEITERTKTEEALRESERQFRYSIEEAPVPVMIYAEDGEIMNINKTWEIITGYTIK 241

Query: 491 DILRKPFTVFLEQ---NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL---RII 544
           DI        +            + L            +      TK   +         
Sbjct: 242 DIPIASEWGKVSDIFKEDSQCSANILYSFEEGRN----DGEYSVKTKSGYVRIWNFYSGY 297

Query: 545 IKKLPFSSCYSL-TMHDISEWKQEKNKLSHAKKIAEKE------SSHKSDFLARVSHEIR 597
           I +L       +    DI+E K  +      +K   +          K+DF A +SHE+R
Sbjct: 298 IGRLSDGRNIIIRVAMDITEKKHMEELQKSIEKERMRLLEIKEYDRIKTDFFANISHELR 357

Query: 598 TPLTAIIGFSE----VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           TP+  I    +     +K+  F      +Y  Y N ++++   +L +VN+L+DI+KI+SG
Sbjct: 358 TPINVIFSAIQVHKLKLKDCNFNDNFPDKYK-YINIMEQNCYRLLRLVNNLIDITKIDSG 416

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713
            + ++     +   + +    V  Y   K + +          I  D   +++I LN+LS
Sbjct: 417 YLVINEINCDIVSLIEDITLSVADYIENKGLSVVFDTDIEEKIIACDPEKMERIILNLLS 476

Query: 714 NAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
           NA+ FT  GG I ++      E + +RV+DTG G+   +L+   + F Q+  S     EG
Sbjct: 477 NAVKFTLRGGSIFVNIE-NGTESICIRVKDTGKGIPKEKLDSIFERFVQVDKSLTRENEG 535

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +G+GL L KA+V+ + G   + S    G+   I  P
Sbjct: 536 SGIGLSLVKALVELHEGTISVNSKEGYGSEFIIHIP 571



 Score = 41.6 bits (96), Expect = 0.59,   Method: Composition-based stats.
 Identities = 21/185 (11%), Positives = 51/185 (27%), Gaps = 12/185 (6%)

Query: 278 INLNQYTKKQYFGTLQNNSKESFEYLS--HRNHPSLSAYFDEGENLTPETVDKCPIPFFV 335
           +        Q    + +  KE    L               E E     ++++ P+P  +
Sbjct: 159 LKEQVRKNNQQLEEITDELKEFNVMLEEEITERTKTEEALRESERQFRYSIEEAPVPVMI 218

Query: 336 Y-SHGNLFYANPSFLLLTKYK--SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
           Y   G +   N ++ ++T Y    +      G +S +         N +      R+D  
Sbjct: 219 YAEDGEIMNINKTWEIITGYTIKDIPIASEWGKVSDIFKEDSQCSANILYSFEEGRNDGE 278

Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
                        +    +   +  +        N+             + + +  IE  
Sbjct: 279 -------YSVKTKSGYVRIWNFYSGYIGRLSDGRNIIIRVAMDITEKKHMEELQKSIEKE 331

Query: 453 QLCSI 457
           ++  +
Sbjct: 332 RMRLL 336


>gi|218532769|ref|YP_002423585.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium
           chloromethanicum CM4]
 gi|218525072|gb|ACK85657.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium
           chloromethanicum CM4]
          Length = 700

 Score =  313 bits (802), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 96/413 (23%), Positives = 179/413 (43%), Gaps = 20/413 (4%)

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
            +     +  A        + +  E +       E +  R+   ++     +   ++EAT
Sbjct: 4   AVSVMGLSIAAAMLALILVSLRRREPVVPESDMTEALQDRL--WQIAESEERYRVLVEAT 61

Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
           ++ +   + +G I   +   + L G    +++           +P V+    +E  +  +
Sbjct: 62  TEAVVQRDGQGRITFASAGFAALLGMKPLELIGSTL-------SPQVIERGASEQRADGV 114

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE 581
           R   E++            + + +        +     D++   +    L  AK  AE  
Sbjct: 115 RVVEERLVPVDGLPRWFSFIEMPVSGSVDGPNWLRAGQDVTARVEAARVLDEAKSRAEAA 174

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
           +  KS FLA VSHE+RTPL  I+G ++++ + R     +P    Y      SG  +L +V
Sbjct: 175 NVAKSRFLATVSHELRTPLNGILGMADLLLDTRL----DPEQRTYVEAFRTSGKALLGLV 230

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-AD 700
           + +LD S+IE+G+++L  EP  +   V   + L+   A +K + I    A+++  +   D
Sbjct: 231 DGILDFSRIEAGRLDLAAEPFDVAALVEGVVELLAPRAQDKGLEIALDIADDLAALRVGD 290

Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTH---TSNEEVILRVRDTGVGMTNYELEKAM 757
              V+QI +N+  NAI FT +GG + +S         E ++L V DTG G+    +    
Sbjct: 291 ADRVRQILVNLAGNAIKFTQTGG-VGVSLARSGEEQGEGLVLTVEDTGPGIPEERIPILF 349

Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           + F Q  +S     EGTGLGL + + +V+   G     ST  +G+   ++ PL
Sbjct: 350 EEFEQGDDSAS--HEGTGLGLAITRRLVERMNGTIEARSTMGRGSTFRVMLPL 400



 Score = 41.2 bits (95), Expect = 0.83,   Method: Composition-based stats.
 Identities = 21/234 (8%), Positives = 49/234 (20%), Gaps = 17/234 (7%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D  G +   S      +G    ++IG  L        I+                 +  L
Sbjct: 69  DGQGRITFASAGFAALLGMKPLELIGSTLS----PQVIERGASEQRA---DGVRVVEERL 121

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
            P++G  L        +P+   +    G              +   +      +    + 
Sbjct: 122 VPVDG--LPRWFSFIEMPV---SGSVDGPNWLRAGQDVTARVEAARVLDEAKSRAEAANV 176

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
            K    +    +       +P   +     +   T     +   ++  +           
Sbjct: 177 AKSRFLATVSHELR-----TPLNGILGMADLLLDTRLDPEQRTYVEAFRTSGKALLGLVD 231

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
              +             + F                     L    D  ++L  
Sbjct: 232 GILDFSRIEAGRLDLAAEPFDVAALVEGVVELLAPRAQDKGLEIALDIADDLAA 285


>gi|89097664|ref|ZP_01170552.1| two-component hybrid sensor and regulator [Bacillus sp. NRRL
           B-14911]
 gi|89087523|gb|EAR66636.1| two-component hybrid sensor and regulator [Bacillus sp. NRRL
           B-14911]
          Length = 956

 Score =  313 bits (802), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 113/573 (19%), Positives = 217/573 (37%), Gaps = 37/573 (6%)

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
           E+    + E+          ++     +    +E+   L  RN  +             +
Sbjct: 264 EQDLTAQNEELLAQQDELQAQQTELEEMLEALRENELKLKRRNDLTNGISSSLDLQSILD 323

Query: 325 TVDKCPIPFFVYSHGNLFYAN-----PSFLLLTKYKSVDDIEIAGGLSTLLDAPKL-SDN 378
           ++            G +   N        +  +  +   D    G    L+ + K  +  
Sbjct: 324 SIVVNMCGIISADRGMIGLLNTKAAAAYAISASGVEQFMDHIENGLHERLIQSKKSFAIK 383

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED- 437
             +        +    +    L  I    E    M F  F       +      +  +  
Sbjct: 384 RELLAGEKGYHEEVSYSYDLYLPVISSKDEVIAVMLFSRFGSPFSEKQMDEYEALSRQVG 443

Query: 438 --VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
             +D      + E E      IL    +GI +++R G IL  NR + ++F  P      +
Sbjct: 444 ISLDNISLYSQSEEERKLNKDILNTVQEGIQMVSRSGAILQANRQLEEMFTCPGAAGRLE 503

Query: 496 PFTVFLEQ-------NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII-IKK 547
                +           P     +L   +       +E I     +  +++ +    + +
Sbjct: 504 NLPWEIWSAEMANKVEQPDEFLAFLQNAV-HSDSCEMESIIYQMKQTGQVIKMYCEGLGQ 562

Query: 548 LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
                   L   DI+                 +    KS+F++ VSHE+RTPL +I+GF+
Sbjct: 563 EDERIGTVLVHRDIT--------------KEFEVDQMKSEFVSTVSHELRTPLASILGFT 608

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
           E++ N+   P    +  +Y   I      +  ++ND LD+ ++E+GK     + + L   
Sbjct: 609 ELMLNRELKP---DKQKKYLTTIYNEARRLTSLINDFLDVQRMEAGKQTYEKKYLRLLPI 665

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727
           + + I   Q+  +  +I I    +     IL D   V+Q+  N++SNA+ ++P GG III
Sbjct: 666 IEQVIEKQQINTDIHKIKID-DRSIGNDVILGDKSKVEQVFTNLISNAVKYSPGGGDIII 724

Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
              +  ++ V+  V D G+G+    L+K    F ++ NS + R  GTGLGL + + ++ A
Sbjct: 725 RL-YQEDKSVLAEVEDKGLGIPEDALDKLFTKFYRVDNSDRRRIGGTGLGLSIVQEIMKA 783

Query: 788 NMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820
           + G   + S+  KG++  + FPL +T+     I
Sbjct: 784 HSGSISVASSYGKGSIFTLSFPLIETAEEPGAI 816


>gi|327538058|gb|EGF24748.1| sensory transduction histidine kinase [Rhodopirellula baltica WH47]
          Length = 638

 Score =  313 bits (802), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 95/480 (19%), Positives = 196/480 (40%), Gaps = 22/480 (4%)

Query: 341 LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400
           +  A+    +L    +  ++                    +K  +            A  
Sbjct: 17  VAVADEKAAVLFDLPANQEVTREEVHRRFHPDDVFDIERKVKQSLEPDGTGEF----ATQ 72

Query: 401 HTIQWNRENSLAMTFIPFE---KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
           H +   +     ++        + +     +       +  + +  +  +     +L   
Sbjct: 73  HRVVHPKGEVRWVSVRKRIFFDEVDGKRVPVSGMVAAIDITEQKETEHNIRTGETRLKLA 132

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP-FTVFLEQNTPSVMNHYLTEI 516
            E T  G   ++        +  + ++FG  + +   +      +     +        +
Sbjct: 133 AEVTGFGTYDLDIRSSDCVWSDEIYRIFGIEIGETFTRTAMFDRVHPEDRARYRQLFLSL 192

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-------CYSLTMHDISEWKQEKN 569
              D + + +        + ++  +      L               TM DI++ K  + 
Sbjct: 193 SGKDAKHSFKLEHRIVRPDGEVRWIVNSGLLLFDERHPGSIPERVIGTMQDITDRKLFEQ 252

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
            L  A+  AE  +  + +FLA +SHEIRTP+ AI+G ++++++     L +P  ++  + 
Sbjct: 253 SLQDARDAAEAANRSRGEFLANMSHEIRTPMAAILGHADILRDH----LRDPDNLQVVDT 308

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I R+GN +L I+ND+LD+SKI++GK+ +  +PV  D  V+E  SL+ + A EK++ ++  
Sbjct: 309 IRRNGNFLLGIINDILDLSKIDAGKLEVAKQPVRPDAIVAEVRSLMDVRAAEKKLPLQIE 368

Query: 690 FANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-VILRVRDTGVG 747
           F   +P +   D   ++QI +N++ NAI FT  G  + ++         +   V DTG+G
Sbjct: 369 FDGPVPAVIHTDAIRIRQILVNLVGNAIKFTDEG-VVRLTVRFDEANSCLQFHVIDTGIG 427

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           + + E++K   PF Q+ N+      GTGLGL +   +  A  G+  + S    G+   + 
Sbjct: 428 IQSDEIDKLFDPFVQVDNTSTRSFGGTGLGLAICHRLAHALNGQVDVESQYGVGSRFTLS 487


>gi|225165722|ref|ZP_03727518.1| Histidine kinase [Opitutaceae bacterium TAV2]
 gi|224800031|gb|EEG18464.1| Histidine kinase [Opitutaceae bacterium TAV2]
          Length = 508

 Score =  313 bits (802), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 99/355 (27%), Positives = 158/355 (44%), Gaps = 14/355 (3%)

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
            +++E   D + +++    ++  NRA S            +P    L       +  +L 
Sbjct: 14  ATLVENLDDRLIVLDENDHVIDLNRAASDSLRTTRSQAFGRPARDILAPW--PPVLAHLH 71

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA 574
                     L       T            +    +    L + DI+E KQ++++L  A
Sbjct: 72  A------HHPLRTEITLGTHTYDFTLQPATTELHAKAPPRILLLRDITERKQDEHRLRAA 125

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
           K  A      +S FLA +SHEIRTP+  +IGF++++++       NPR +EY + I RSG
Sbjct: 126 KDAAVAADRAQSRFLAMMSHEIRTPMNGVIGFTQLLRDTPL----NPRQMEYVDLITRSG 181

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
             +L I++D+LD SK+ +G + L   P  L   + + I L+   A +K I I       +
Sbjct: 182 QSLLVIIDDILDYSKVSAGHLQLERAPCELRRLIEQHIQLLHTGARQKNITIDLHIDPLV 241

Query: 695 PR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753
           P  I+ D   + QI  N++SNAI FT  GG + I         + L V DTG+G+     
Sbjct: 242 PSLIIGDAVRIGQIVSNLVSNAIKFTHHGG-VHIHLVPDGPRCLALHVTDTGIGIPPEAH 300

Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            +  +PF Q   S   R  GTGLGLP+ + +     G   + S P  G+     F
Sbjct: 301 RRIFEPFSQADGSTTRRYGGTGLGLPITRLLCTLMGGTLTLSSQPGHGSTFTATF 355


>gi|330445983|ref|ZP_08309635.1| sensory box protein [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328490174|dbj|GAA04132.1| sensory box protein [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 700

 Score =  313 bits (802), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 90/447 (20%), Positives = 177/447 (39%), Gaps = 19/447 (4%)

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
           +      ++           +++S  +  +  + ++             +         I
Sbjct: 120 RDQPKVILEEYQSALLTGVKVSSSDAVMILMSHDKSQFTPRCRRVLNRFRPLLARAIIDI 179

Query: 434 EPEDVDTRINKRKMEI---EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490
           +  +    +   + +       +     +   D    I+        +     +  YP+ 
Sbjct: 180 DYRERLQSLVAARTQQLTFSQQRFKDFAKTAGDWFWEIDINFNFTYISEP--HIANYPIT 237

Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
                 F     Q    +      +++  DL        +  T  E+  +         +
Sbjct: 238 CDNFIEFFQDYPQFQKKLELKLAEQVVFEDLEWN-----IKKTNSEQWFNFSGTPYFDKY 292

Query: 551 S--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                Y  T  +I+  K+    L  A+K AE  +  KS F+A +SHEIRTPL A++G  E
Sbjct: 293 GKLQGYRGTAKNITSRKKRLFDLQEARKQAESANKAKSQFIAMMSHEIRTPLNAVLGLME 352

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
            +         + +   + + +D+S +L+L I+ND+LD+S+IESG   L    +++ E++
Sbjct: 353 SLSLSGL----DSKQKLWLSQMDQSAHLLLTIINDILDLSRIESGSFRLFNSDINIVESI 408

Query: 669 SEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIII 727
                 +   A +K + ++    ++IP +I  D   + Q+  N++ NA+ FT  G   I+
Sbjct: 409 KLVADQLSPQATKKNVQLQCEIDDSIPKQIYGDKNRIAQVLFNLIGNAVKFTSVGSVRIV 468

Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
           +        + + V DTG+G+     E    PF Q   S   R  GTGLGL +++ +++ 
Sbjct: 469 ARKIEE--TIEIAVIDTGIGIAKDAQENIFNPFHQADGSITRRYGGTGLGLAISQYLIEK 526

Query: 788 NMGKFYIFSTPAKGTLIEIIFPLYDTS 814
             GK  + S    G+  +I  P+   S
Sbjct: 527 MKGKISLESELGTGSCFKISIPIVYPS 553


>gi|289433267|ref|YP_003463140.1| multi-sensor hybrid histidine kinase [Dehalococcoides sp. GT]
 gi|288946987|gb|ADC74684.1| multi-sensor hybrid histidine kinase [Dehalococcoides sp. GT]
          Length = 852

 Score =  313 bits (802), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 102/516 (19%), Positives = 197/516 (38%), Gaps = 43/516 (8%)

Query: 313 AYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSV---DDIEIAGGLST 368
             F       P  + +      V+     L   NP+   +T   +     ++     LS 
Sbjct: 230 KLFKTIPFAYPLILQQMNDGILVFDKSNRLLETNPAACRMTGLNNTMVGQELRDLCELSP 289

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
           LL+              L  +D   +         +   ++            N+  + +
Sbjct: 290 LLE-------------CLSITDFGHLDME---SATRIKGKSYQ---LDKQPLFNKQKQLV 330

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
                  +    +   ++++    Q  +++E  +DGI I+ + G+++  N  + +L GY 
Sbjct: 331 GWLATIRDISQRKQTDQELKERKEQYFTLVEHGNDGIIIV-QHGLVVYANSKMKELSGYL 389

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ-TLEKITLGSTKEEKLLSLRIIIKK 547
           +EDIL KPF  F+      ++  +  + +         E   +    +E  + +   + +
Sbjct: 390 MEDILEKPFVQFISPEQRELIEKHYQKRIEGQKSSGRYEACLINKNGQEVYVEISASLIE 449

Query: 548 LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS--HKSDFLARVSHEIRTPLTAIIG 605
                     + D++  KQ + +    +  AE  S      +  A ++HEI  PLT +IG
Sbjct: 450 YDGQIADMAIIRDLTAHKQAELENQRLRDKAEMASRLAAIGEMAAGIAHEINNPLTGVIG 509

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
           FSE++  +   P      +     I+     V++IV  LL  ++    +       +++ 
Sbjct: 510 FSELLAAREDLP---EDIMADLQVINHGSQRVVEIVRRLLTFAR----QNKPVKTRLNVH 562

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT---PSG 722
           E +   +           I +   +  N+P I AD   ++Q+ LN++ NA         G
Sbjct: 563 ELIDNTLEFRSYVFKTANIEVIRKYDQNLPWITADPGQLQQVFLNLVINAEQAMRKAHDG 622

Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
           G++ I+TT   +    + + D G GMT     K  +PF      +     GTGLGL LA 
Sbjct: 623 GKLTITTTREDS-FFSICIADDGPGMTPEVKAKIFQPFFTTKGPKD----GTGLGLSLAM 677

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
           A++  + G   + S   + T   I  P+ D+S   D
Sbjct: 678 AIILDHHGTIGVESEYGRDTAFTINLPM-DSSETED 712



 Score = 43.9 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 23/202 (11%), Positives = 49/202 (24%), Gaps = 13/202 (6%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151
           HG +   + ++ +  G     ++             +                G+     
Sbjct: 372 HGLVVYANSKMKELSGYLMEDILEKPFVQFISPEQRELIEKHYQKRIEGQKSSGRYEACL 431

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
           I      V ++++A  I   + + +      I+             +RL  K      + 
Sbjct: 432 INKNGQEVYVEISASLI-EYDGQIADM---AIIRDLTAHKQAELENQRLRDKAEMASRLA 487

Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271
                 E          +P         V   +E  A ++D+ +     L      S   
Sbjct: 488 AI---GEMAAGIAHEINNPLTG------VIGFSELLAAREDLPEDIMADLQVINHGSQRV 538

Query: 272 QEDFHTINLNQYTKKQYFGTLQ 293
            E    +       K     L 
Sbjct: 539 VEIVRRLLTFARQNKPVKTRLN 560


>gi|39995118|ref|NP_951069.1| sensory box histidine kinase [Geobacter sulfurreducens PCA]
 gi|39981880|gb|AAR33342.1| sensory box histidine kinase [Geobacter sulfurreducens PCA]
          Length = 762

 Score =  313 bits (802), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 92/384 (23%), Positives = 186/384 (48%), Gaps = 25/384 (6%)

Query: 434 EPEDVDTRINKR--KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
             E ++ R+ +R   +++E+ +L +IL + ++GIA+ +R+G ++  N A  +LF      
Sbjct: 396 MNEFLERRVEERTAALQVEMGRLEAILTSMAEGIAVTDRDGRVILFNPAAQQLFEMVPHR 455

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
           ++ +P      Q     +  ++T +     + T+ +  +      K L + +        
Sbjct: 456 VVGQPILDICNQGEFCRLVEHITSMGENRDQATVRE--VDLDARGKKLKVTLAPLVDGDG 513

Query: 552 S--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                 +++ D++     + ++             K++F++ VSHE++TPLT+I G  ++
Sbjct: 514 HFAGVVMSVRDVT----AEEEV----------DRMKTEFISTVSHELKTPLTSIKGSLQL 559

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           I ++  G     +  E      R+   ++ +VND+LDI+KIESGKM     P S  E V 
Sbjct: 560 IVDKSRGFTDVEK--ELLGVCLRNTERLIRLVNDILDIAKIESGKMEFALSPHSPAELVE 617

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
            ++  ++ +A E  + +    + ++P I  D   + Q+  N+++NA+ F+P G  + IS 
Sbjct: 618 WSVRELEGFAREHGVTVVNEVSADLPAIYGDGDRLGQVLTNLIANAVKFSPRGAVVTISA 677

Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
             + N  V + V+D G  +   +  K  K F QI +  + +  GTGLGL + K +V+ + 
Sbjct: 678 EQSDN-FVAVSVKDRGREIQWADRGKLFKRFQQIDSGDRRQHGGTGLGLAICKEIVERHH 736

Query: 790 GKFYIFST-PAKGTLIEIIFPLYD 812
           G+   +S     G +     P+++
Sbjct: 737 GRI-FYSEGIGGGNVFTFTVPIHE 759



 Score = 41.6 bits (96), Expect = 0.53,   Method: Composition-based stats.
 Identities = 29/255 (11%), Positives = 73/255 (28%), Gaps = 14/255 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI-DPNNHIGDLLKRQNTWYGKT 147
            D  G +   +    +       +++G  + D+ +         HI  + + ++    + 
Sbjct: 432 TDRDGRVILFNPAAQQLFEMVPHRVVGQPILDICNQGEFCRLVEHITSMGENRDQATVRE 491

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                 G  L V +     P+   +  F+G     +V   R       + +   +  S +
Sbjct: 492 VDLDARGKKLKVTL----APLVDGDGHFAG-----VVMSVRDVTAEEEVDRMKTEFISTV 542

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
               K   +  K    +   +S        +    L        + L      +L   + 
Sbjct: 543 SHELKTPLTSIKGSLQLIVDKS----RGFTDVEKELLGVCLRNTERLIRLVNDILDIAKI 598

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
              + E   + +      +     L+  ++E    + +     L A + +G+ L     +
Sbjct: 599 ESGKMEFALSPHSPAELVEWSVRELEGFAREHGVTVVNEVSADLPAIYGDGDRLGQVLTN 658

Query: 328 KCPIPFFVYSHGNLF 342
                      G + 
Sbjct: 659 LIANAVKFSPRGAVV 673


>gi|22536884|ref|NP_687735.1| sensory box histidine kinase [Streptococcus agalactiae 2603V/R]
 gi|22533734|gb|AAM99607.1|AE014224_10 sensory box histidine kinase [Streptococcus agalactiae 2603V/R]
          Length = 449

 Score =  313 bits (802), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 87/415 (20%), Positives = 170/415 (40%), Gaps = 36/415 (8%)

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT-RINKRKMEIEVMQLCSILEATSD 463
           W   + +A  +          + +       +  D  R+    +E E  +L SIL   +D
Sbjct: 45  WKVRDLIAGNYSDSILIQGDADLVELGESLNDLSDVFRMAHDNLEQEKNRLASILTYMTD 104

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
           G+   +R G I+  N    + F    ++ L       L   +P      +         +
Sbjct: 105 GVLATDRSGKIVMINETAQQQFNLAYDEALSMNIVDMLGSGSPYSFQDLV--------SK 156

Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAE 579
           T E +     +  + ++LRI        S +        HD +E ++E+ +         
Sbjct: 157 TPEVVLNRRDENGEFVTLRIRFALNRRESGFISGLVAVSHDATEQEKEERERRL------ 210

Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639
                   F++ VSHE+RTPLT++  + E +     G L       +        N ++ 
Sbjct: 211 --------FVSNVSHELRTPLTSVKSYLEAL---DEGALNEEVAPSFIKVSLDETNRMMR 259

Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI-----LIRTSFANNI 694
           +++DLL +S+I++   +L  E  +    ++  ++      N+K +      I   +    
Sbjct: 260 MISDLLSLSRIDNEVTHLDVEMTNFTAFMTSILNRFDQIRNQKTVTGKVYEIVRDYPLKS 319

Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELE 754
             +  D   + Q+  NIL+NA+ ++P GG+I ++   T  + + L + D G+G+   +L 
Sbjct: 320 IWVEIDTDKMTQVIDNILNNAVKYSPDGGKITVNLRTTKTQMI-LSISDQGLGIPKKDLP 378

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
                F ++  ++  +  GTGLGL +AK +V  + G  +  S   KG+   I+ P
Sbjct: 379 LIFDRFYRVDKARSRKQGGTGLGLSIAKEIVKQHKGFIWAKSEYGKGSTFTIVLP 433


>gi|313902163|ref|ZP_07835572.1| multi-sensor signal transduction histidine kinase [Thermaerobacter
           subterraneus DSM 13965]
 gi|313467563|gb|EFR63068.1| multi-sensor signal transduction histidine kinase [Thermaerobacter
           subterraneus DSM 13965]
          Length = 522

 Score =  313 bits (802), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 91/484 (18%), Positives = 170/484 (35%), Gaps = 50/484 (10%)

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
            G L  L     L        V          A + R+                   +  
Sbjct: 32  LGELPQLFSRDFLPTLILGLLVAALTGAGLGWAMAERVTRPVRELVAGARQLAAGEFERR 91

Query: 423 QFPENMPQNGIEPEDVDTRINK-----RKMEIEVMQLCSILEATSDGIAIINREGIILST 477
              +   +        +    +     R++  E  +L +++ A + G+  I+ +G +   
Sbjct: 92  VHVDGPDELVTLARAFNEMAARLQVTLRELRTEQARLATVVGAMTSGVLFIDGDGRLRLA 151

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL--TEILSLDLRQTLEKITLGSTKE 535
           N A  +L   P + + R   +V        V+   L   +++  D+    +         
Sbjct: 152 NPAARRLLDIPEQALGRDYISVTRNYGLARVIEEGLVGGQVVEHDVTIPPDPGAAPRHVR 211

Query: 536 EKLLSL-------------------------RIIIKKLPFSSCYSLTMHDISEWKQEKNK 570
             ++ L                         R +           + +HDI+E ++ +  
Sbjct: 212 VTVVPLGTDAGGATVPDGVDVPCEAGSNSAGRGVTAAEGKRGGVVVVLHDITEIRRLE-- 269

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
                         + DF+A VSHE+RTP+ A+ GF+E +               +A  I
Sbjct: 270 ------------QIRRDFVANVSHELRTPVAAVQGFAETLLEGVI-REDPATAEHFAQVI 316

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
            R    +  +V DLLD++++ES +  L  E   L ++  +A    +       + +    
Sbjct: 317 HREAERMARLVQDLLDLARLESPEPGLQRERFDLRDSAVQAAERFRPRLEAAGLRLEVQS 376

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL---RVRDTGVG 747
                 + AD   + Q+  N+L NA  +TP GG + ++          +    VRDTG G
Sbjct: 377 PPEPVPVWADRHRLDQVWTNLLENARQYTPVGGTVTVAVGREGQGHQAMAVGEVRDTGRG 436

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           +    L +  + F ++   +     GTGLGL + K +++A+ G     S    GT+I   
Sbjct: 437 IPPDVLPRIFERFYRVDPGRSRAAGGTGLGLAIVKHIIEAHGGVVGAESQLGAGTVIRFR 496

Query: 808 FPLY 811
            PL 
Sbjct: 497 IPLA 500



 Score = 41.6 bits (96), Expect = 0.56,   Method: Composition-based stats.
 Identities = 21/261 (8%), Positives = 55/261 (21%), Gaps = 27/261 (10%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G L+  +    + +       +G     V+    +      G +            
Sbjct: 142 IDGDGRLRLANPAARRLLDIPEQA-LGRDYISVTRNYGLARVIEEGLV---GGQVVEHDV 197

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI------------VHVNRVDNDPRAL 196
             P +       + +  +P+ +     +   G  +            V           +
Sbjct: 198 TIPPDPGAAPRHVRVTVVPLGTDAGGATVPDGVDVPCEAGSNSAGRGVTAAEGKRGGVVV 257

Query: 197 GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256
                 +   L +I++   +    +              +   V       A     +  
Sbjct: 258 VLHDITEIRRLEQIRRDFVANVSHELRTPVAAVQGFAETLLEGVIREDPATAEHFAQVIH 317

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
            +   +      L +     +       ++         + E F          L     
Sbjct: 318 REAERMARLVQDLLDLARLESPEPGLQRERFDLRDSAVQAAERFRPRLEAAGLRLEVQSP 377

Query: 317 EGENLTPETVDKCPIPFFVYS 337
                        P+P +   
Sbjct: 378 PE-----------PVPVWADR 387



 Score = 37.7 bits (86), Expect = 8.6,   Method: Composition-based stats.
 Identities = 36/365 (9%), Positives = 79/365 (21%), Gaps = 30/365 (8%)

Query: 213 GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ 272
           G + V      +  +            +       A     L       +T     L   
Sbjct: 20  GVAVVGTVTALLLGELPQLFSRDFLPTLILGLLVAALTGAGLGWAMAERVTRPVRELVAG 79

Query: 273 EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP 332
                    +                +F  ++ R   +L       +      V      
Sbjct: 80  ARQLAAGEFERRVHVDGPDELVTLARAFNEMAARLQVTLR-ELRTEQARLATVVGAMTSG 138

Query: 333 F-FVYSHGNLFYANPSFLLLTKYKSVDD------IEIAGGLSTLLDAPKLSDNNAIKPVM 385
             F+   G L  ANP+   L              +    GL+ +++   +        V 
Sbjct: 139 VLFIDGDGRLRLANPAARRLLDIPEQALGRDYISVTRNYGLARVIEEGLVGGQVVEHDVT 198

Query: 386 LYRSDR-TCIAASARLHTIQWNRENSLAMTFIPFE-----------KANQFPENMPQNGI 433
           +              +  +  +   +     +                    +      +
Sbjct: 199 IPPDPGAAPRHVRVTVVPLGTDAGGATVPDGVDVPCEAGSNSAGRGVTAAEGKRGGVVVV 258

Query: 434 EPEDVDTRINKRKMEIEVM----QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
             +  + R  ++     V     +L + + A   G A    EG+I               
Sbjct: 259 LHDITEIRRLEQIRRDFVANVSHELRTPV-AAVQGFAETLLEGVIREDPATAEHFAQVIH 317

Query: 490 EDILR-----KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
            +  R     +         +P          L     Q  E+           L ++  
Sbjct: 318 REAERMARLVQDLLDLARLESPEPGLQRERFDLRDSAVQAAERFRPRLEAAGLRLEVQSP 377

Query: 545 IKKLP 549
            + +P
Sbjct: 378 PEPVP 382


>gi|312892001|ref|ZP_07751502.1| signal transduction histidine kinase with CheB and CheR activity
            [Mucilaginibacter paludis DSM 18603]
 gi|311295498|gb|EFQ72666.1| signal transduction histidine kinase with CheB and CheR activity
            [Mucilaginibacter paludis DSM 18603]
          Length = 1605

 Score =  313 bits (802), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 97/643 (15%), Positives = 212/643 (32%), Gaps = 44/643 (6%)

Query: 192  DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP-----HLRMKNKVSSLTEY 246
            +        +++F  +               +   +              +    S    
Sbjct: 985  ERTQKLTESEERFKLVSTATNDTIWDWNLVSNTMWRSDNFTSMFGYQRDDETNQISFWFG 1044

Query: 247  YAHKDDVLKTEKYPLLTSE--ESSLPEQEDFHTINLNQYTKKQYFGTLQNN----SKESF 300
              H DD L+ E+         E     +  F   +            L++      +   
Sbjct: 1045 KIHPDDRLRVEQSVFNAINHHEKQWSAEYRFQKADGTYAIILDRGRILEDEFHTPYRLVG 1104

Query: 301  EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDD 359
              +             + EN   +  D   I   F    G L   N +FL +  Y   D 
Sbjct: 1105 SIIDITRLIETEKRLSQSENKFRKVFDSNLIGMCFADPDGRLLETNDAFLNMLGYSRADM 1164

Query: 360  IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
                G L+     P  S   + +       +  C         I+ +      +      
Sbjct: 1165 --ETGQLNLQNLTPPTSRQASSRAQKELDENGFCQPYEK--QYIRKDGSLVSVLKGSAML 1220

Query: 420  KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI-AIINREGIILSTN 478
              ++   ++       +    +  +  +  +  +  SI       I        +    N
Sbjct: 1221 SEDEKQISVSYIL---DITRQKELQHMISKQQEEFYSIFTNAPALITIRRGPNLVYEFVN 1277

Query: 479  RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE--- 535
             A  +L G   ++ + +      +    + +     E++      T  +           
Sbjct: 1278 NAFIRLDG--QQNYIGRSTAEINQWWPGTELGRADAEVMRSGQPFT-GRSVRIQWPNAQT 1334

Query: 536  ----EKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
                +                    +    D++E  +        ++  E+    K +FL
Sbjct: 1335 GKQADHWFDFIFTPVFNDDDKLDGIAFFGFDVTELVKA-------RETTEELMHKKDEFL 1387

Query: 590  ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
            +  SHE++TP+T++ G  ++++       G    +++    +   N +  +V+DLLD++K
Sbjct: 1388 SIASHELKTPITSLKGSLQILQRIMAREGGKNTVMDFVGKANNQTNKLTTLVDDLLDVTK 1447

Query: 650  IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709
            I++GK+ L++E     + V E +  V+        +++      +  I AD   ++Q+  
Sbjct: 1448 IQAGKLLLNYETFDAVQLVKEVLEEVRAQEGTHEFILQ---GEGLITITADRTRLEQVIT 1504

Query: 710  NILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
            N L+NAI ++P G ++I++ +   N E  L V+D G+G+   + +     F ++  S   
Sbjct: 1505 NFLTNAIKYSPKGDKVILNCSLFEN-EFKLTVQDFGIGIPEAKKDYLFDRFYRVQESSTH 1563

Query: 770  RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
               G GLGL ++  ++  + G+  + S   +G       PL  
Sbjct: 1564 -FSGLGLGLYISAEIIKRHRGQIGVESAIGEGATFWFTVPLQP 1605



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/365 (11%), Positives = 103/365 (28%), Gaps = 42/365 (11%)

Query: 229 SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288
            P      +  +  +    +     L+     + T+ E      E+  + N    +  + 
Sbjct: 638 PPVNAGSDQEYLMEMEAELSETRINLQMAVEEMETTNEELQSSNEELLSANEELQSGNEE 697

Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSF 348
             +L             +    +    D         + +     FV ++  +   NP+ 
Sbjct: 698 LQSLNEELHTLNTEHQLKIRELVELNDDLDNYFRSTDIGQ----IFVDANLRIRKFNPAA 753

Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
           + +      D       LS  +    L  +     +    +    I     L +      
Sbjct: 754 INMINLIDADVGRPINHLSNNILYDNLIAD-----IHSVLATGQVIEKEVLLKS-----G 803

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS-ILEATSDGIAI 467
            +  M  +P+ K +   + +  + I+   +          +E+ Q+ S +  A++  I  
Sbjct: 804 TNNLMRIMPYVKKDGQHDGVVISFIDISVI----------VELNQIISGVFNASTAAILA 853

Query: 468 I---------NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
                     N +   ++ N A   LFG P  ++  +P      +           +   
Sbjct: 854 FRDNRTEGSKNPDFRCIAYNDAALTLFGKPAVEMDAQPRLQSFPELIGIASAEQYAKAAR 913

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578
                     T   T ++    + I   +      + +++ +I+  K  + KL       
Sbjct: 914 QSKAW----ETELHTGQDNWYQVTIGPMR----EGFVVSLTNITARKNAEQKLKKNYHEL 965

Query: 579 EKESS 583
                
Sbjct: 966 INARE 970



 Score = 44.2 bits (103), Expect = 0.099,   Method: Composition-based stats.
 Identities = 17/139 (12%), Positives = 39/139 (28%), Gaps = 9/139 (6%)

Query: 82   TVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI-LHIDPNNHIGDLLKRQ 140
                T     +   + ++    +  G      IG    +++      +      ++++  
Sbjct: 1260 PALITIRRGPNLVYEFVNNAFIRLDG--QQNYIGRSTAEINQWWPGTELGRADAEVMRSG 1317

Query: 141  NTWYGKTTL--WPIE--GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRAL 196
              + G++    WP    G       D    P+++ + +  G   FG           R  
Sbjct: 1318 QPFTGRSVRIQWPNAQTGKQADHWFDFIFTPVFNDDDKLDGIAFFGF--DVTELVKARET 1375

Query: 197  GKRLDKKFSHLHEIKKGHS 215
             + L  K      I     
Sbjct: 1376 TEELMHKKDEFLSIASHEL 1394


>gi|295425530|ref|ZP_06818221.1| sensor histidine kinase VicK [Lactobacillus amylolyticus DSM 11664]
 gi|295064783|gb|EFG55700.1| sensor histidine kinase VicK [Lactobacillus amylolyticus DSM 11664]
          Length = 618

 Score =  313 bits (802), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 91/411 (22%), Positives = 176/411 (42%), Gaps = 39/411 (9%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
               ++  +           V+    +   + E  +L S+L   +DG+   +R G +   
Sbjct: 232 IYSDDELGQLGKAFNTLSIRVERSQEES--DSERRRLDSVLSHMTDGVLAADRHGNVNVV 289

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
           N+          +D++ +P    L       +N    ++++      +       T++E 
Sbjct: 290 NQMALSFLNVKEKDVIGEPINKVL------GLNESAQDLIANQKEIVV--TVNSGTRDEM 341

Query: 538 LLSLRIIIKK--LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
           +L     + K    F S     +HD++E ++ +             +S K  F++ VSHE
Sbjct: 342 ILHASFSLIKRVTGFVSGSVCVLHDVTEQQKNE-------------NSQK-QFVSNVSHE 387

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           +RTPLT++  + E +     G   +P    ++          ++ ++NDLL +S+++ G 
Sbjct: 388 LRTPLTSLRAYIEALNE---GAWKDPTIAPQFLQVTQEETERMIRMINDLLSLSRMDRGV 444

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRI-------LIRTSFANNIPRILADLRSVKQI 707
             +  E V+L++ VS  ++   +     +         IR    N    +  D   + Q+
Sbjct: 445 SKMDLEWVNLNDFVSHILNRFDMIVKTDKNTDKKKKYTIRRELGNQALWVEIDTDKMMQV 504

Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
             NI++NAI ++P GG I +      N  VIL + D G+G+   +L K    F ++  ++
Sbjct: 505 IDNIMNNAIKYSPDGGVITVRLVQNQN-HVILSISDQGLGIPRKDLGKIFDRFYRVDKAR 563

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
                GTGLGL +AK +V+A+ GK +  S+   G+   I  P Y++    D
Sbjct: 564 SRAQGGTGLGLAIAKEIVEAHHGKIWADSSEGNGSTFYISLP-YESMSEED 613


>gi|153937779|ref|YP_001386293.1| sensory box histidine kinase [Clostridium botulinum A str. Hall]
 gi|152933693|gb|ABS39192.1| sensory box histidine kinase [Clostridium botulinum A str. Hall]
          Length = 617

 Score =  313 bits (802), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 84/362 (23%), Positives = 162/362 (44%), Gaps = 10/362 (2%)

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLF-GYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           ++E   D I I  ++  I+  N + ++L       ++       F+ +     + + L  
Sbjct: 222 LIENARDAIIIHRKD-KIVFANESAAELLICSNNNELQNLNINSFILKEEQKKIRNKLEL 280

Query: 516 ILSLDLRQT-LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA 574
           +         +E++   + +E+  +                  + DI+  KQ +      
Sbjct: 281 VYRNKRDIVCVEQVIQNNRREKINVESISTYIIYNNKPAILSILRDITSQKQVEKLQKDV 340

Query: 575 KKIAEKESSHK------SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
           +K  E  +  +      +DFLA +SHE++TPL  I    +++   +       +  +Y  
Sbjct: 341 EKNIELLNESREYNKLITDFLANISHELKTPLNVIFTAVQILDLYKKDAESYDKKEQYIK 400

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I ++   ++ ++N+LLD +K++SG + L+    ++   V E    V  YA  K I I  
Sbjct: 401 VIKQNCYRLMRLINNLLDTTKLDSGYLKLNLVNCNIVNLVEEITLSVVYYAESKNINIIF 460

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748
                   +  D   +++I LN+LSNAI FT SGG I ++     +  +++ V+DTG+G+
Sbjct: 461 DTDVEEKIMAVDPDKIERIVLNLLSNAIKFTGSGGNIYVTVKDFEDN-IVISVKDTGIGI 519

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
              ++E     F Q+  + +   EG+G+GL L K+ V+ + G   I S   KG+   I  
Sbjct: 520 PEDKIENIFDRFVQVDKTLRRNKEGSGIGLYLVKSFVNMHEGTIDIQSEIGKGSEFIINI 579

Query: 809 PL 810
           P+
Sbjct: 580 PV 581


>gi|153933211|ref|YP_001382742.1| sensory box histidine kinase [Clostridium botulinum A str. ATCC
           19397]
 gi|152929255|gb|ABS34755.1| sensory box histidine kinase [Clostridium botulinum A str. ATCC
           19397]
          Length = 617

 Score =  313 bits (802), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 84/362 (23%), Positives = 162/362 (44%), Gaps = 10/362 (2%)

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLF-GYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           ++E   D I I  ++  I+  N + ++L       ++       F+ +     + + L  
Sbjct: 222 LIENARDAIIIHRKD-KIVFANESAAELLICSNNNELQNLNINSFILKEEQKKIRNKLEL 280

Query: 516 ILSLDLRQT-LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA 574
           +         +E++   + +E+  +                  + DI+  KQ +      
Sbjct: 281 VYRNKRDIVCVEQVIQNNRREKINVESISTYIIYNNKPAILSILRDITSQKQVEKLQKDV 340

Query: 575 KKIAEKESSHK------SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
           +K  E  +  +      +DFLA +SHE++TPL  I    +++   +       +  +Y  
Sbjct: 341 EKNIELLNESREYNKLITDFLANISHELKTPLNVIFTAVQILDLYKKDAESYDKKEQYIK 400

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I ++   ++ ++N+LLD +K++SG + L+    ++   V E    V  YA  K I I  
Sbjct: 401 VIKQNCYRLMRLINNLLDTTKLDSGYLKLNLVNCNIVNLVEEITLSVVYYAESKNINIIF 460

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748
                   +  D   +++I LN+LSNAI FT SGG I ++     +  +++ V+DTG+G+
Sbjct: 461 DTDVEEKIMAVDPDKIERIVLNLLSNAIKFTGSGGNIYVTVKDFEDN-IVISVKDTGIGI 519

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
              ++E     F Q+  + +   EG+G+GL L K+ V+ + G   I S   KG+   I  
Sbjct: 520 PEDKIENIFDRFVQVDKTLRRNKEGSGIGLYLVKSFVNMHEGTIDIQSEIGKGSEFIINI 579

Query: 809 PL 810
           P+
Sbjct: 580 PV 581


>gi|29347071|ref|NP_810574.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|29338969|gb|AAO76768.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 601

 Score =  313 bits (802), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 106/533 (19%), Positives = 200/533 (37%), Gaps = 48/533 (9%)

Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSV 357
             E        S        E +        P+   +Y+  G L   N   L +      
Sbjct: 95  IAETQDGPRMASAYQALQNSERILHNIYKNLPVGIELYNKDGYLLDLNKKELEMFHITHK 154

Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR-------ENS 410
           + +        + + P L +      + L   D   +  + +    +             
Sbjct: 155 EKVIGIN----IFENPALPE-----EIKLKIRDNEEVEFTFQYDFSKIKGYYESEKTSGF 205

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470
           + +T       +   + +    I  +  +  I   K++        + +    G A  + 
Sbjct: 206 INLTTRITTLYDHDRQPINYLLINVDKTENTIAYNKIQEFKNFFELVGDYAKVGYAHFDA 265

Query: 471 EGIILSTNRAVSKLFGYPVEDILRKP------FTVFLEQNTPSVMNHYLTEILSLDLRQT 524
               LS N      +   V +    P                +VM  +L +++       
Sbjct: 266 ----LSRNGYALSSWYKNVGEEEGTPLPEIIGIHSHFHPEDRAVMLDFLAKVVK-GESTK 320

Query: 525 LEKITLGSTKEEKLLSLRIII-----KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579
           L +       +      R+ +     +             DI++ K+ +  L  AK+ AE
Sbjct: 321 LCRDVRIRRADGSYTWTRVNVLVRNYRPQDNVIEMLCINFDITQLKETEQMLIKAKEKAE 380

Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639
           +    KS FLA +SHEIRTPL AI+GFS +++             +Y   I+ +  L+L 
Sbjct: 381 EADRLKSAFLANMSHEIRTPLNAIVGFSSMLEE----AEDQEEKHQYITIIEDNNKLLLQ 436

Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-- 697
           +++D+LD+SKIE+G  ++  E V+  +  ++    +Q+  + +   +     +N+P +  
Sbjct: 437 LISDILDLSKIEAGTFDIIPERVNAKQLCNDLFQAMQMKTSPQ---VELRLKDNLPELTF 493

Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757
            +D   + Q+ LN ++NA+ FT  G  I I        EV   V+DTG+G+   + E   
Sbjct: 494 TSDKNRLYQVLLNFVTNALKFTSEG-NITIDYQI-DGNEVKFSVQDTGMGIEPEKQEAIF 551

Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             F ++ +       GTGLGLP+ +++V    GK  + S P +G       P+
Sbjct: 552 TRFVKLNSFI----PGTGLGLPICQSIVTQLGGKIGVESEPGRGACFWFTHPI 600


>gi|228988692|ref|ZP_04148778.1| hypothetical protein bthur0001_53470 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228771143|gb|EEM19623.1| hypothetical protein bthur0001_53470 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 588

 Score =  313 bits (802), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 84/372 (22%), Positives = 158/372 (42%), Gaps = 25/372 (6%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +  +   E E  +L S+L   +DG+   +R+G I+  N    K+     E  L +     
Sbjct: 233 QQARSSTESERRKLSSVLSHMTDGVIATDRKGDIILLNDPAEKMLNVSRETALDQSVLEV 292

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
           L       ++H   E  S+ L  +                  +I K+   ++     ++D
Sbjct: 293 LGIQEEFTLDHLYEEPDSVLLDFSTRNEPYILRAS-----FSVIQKETGKANGLIAVLYD 347

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           ++                E+    + +F+A VSHE+RTPLT +  + E + +  +     
Sbjct: 348 VT--------------EQERIERERREFVANVSHELRTPLTTMRSYLEALTDGAWQNPNI 393

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
                +          ++ +VN LL +SK++S +  L  E V   +  +  I   +  + 
Sbjct: 394 APQ--FLTVTQEETERMIRLVNALLQLSKLDSTEHRLMKEWVDFTDFFNNIIDRFE-MSK 450

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV-IL 739
           E+ +  + SF+     I  D   + Q+  NI+SNA+ ++P GG +          E+  +
Sbjct: 451 EQNVSFKRSFSKKSRFIDMDTDKITQVLYNIISNALKYSPEGGTVT--YRLRDRGELLEI 508

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V D G+G+    ++K  + F ++  ++  +  GTGLGL +AK M++A+ G  +  S   
Sbjct: 509 SVSDQGMGIPKENVDKIFERFYRVDKARSRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEG 568

Query: 800 KGTLIEIIFPLY 811
           KGT I    P+ 
Sbjct: 569 KGTTIYFTLPMA 580


>gi|150019623|ref|YP_001311877.1| multi-sensor hybrid histidine kinase [Clostridium beijerinckii
           NCIMB 8052]
 gi|149906088|gb|ABR36921.1| multi-sensor hybrid histidine kinase [Clostridium beijerinckii
           NCIMB 8052]
          Length = 979

 Score =  313 bits (802), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 108/376 (28%), Positives = 200/376 (53%), Gaps = 10/376 (2%)

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIIL-STNRAVSKLFGYPVEDILRKPFTVF 500
           + + ++  + +   S++++ +D I+ I+  G I    +   + L+   +   L       
Sbjct: 461 VTQSELRKKEVDFRSLVDSINDIISEIDINGYITKLWSSVHTYLYKLHMHGHLN-SIYDI 519

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE-KLLSLRIIIKKLPFSSCYSLTMH 559
           L+++T  +    +  ++      T++      +K+  K     I    L +     +   
Sbjct: 520 LDESTAKIAKEKIHYVIKSRKSTTMDFNI--QSKDGLKWFEACISP-HLNYKDRVVVLTR 576

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           DI+E K+    +  AK+ AEK S  KS+FL+ +SHE+RTPL AI+GFS++++     PL 
Sbjct: 577 DITEQKKMARSIITAKEEAEKASKAKSEFLSSMSHELRTPLNAILGFSQILELDPESPL- 635

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
           NP   +    I ++G+ +L+++N++LD++KIESGK+++  E V +   + EAIS+++ +A
Sbjct: 636 NPSQSQSVKEISKAGSHLLELINEILDLAKIESGKLSISIESVPIKHVIEEAISIIKPFA 695

Query: 680 NEKRI-LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738
           ++ +I +I     N+   + AD   +KQI LN+LSNAI +    GQ+ I      N++  
Sbjct: 696 DKHKIKIINYPIDNSDEFVSADHTRLKQILLNLLSNAIKYNKKDGQV-IFYHDKVNDKYR 754

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
             V DTG+G++N +LE   KPF ++        EGTG+GL +AK + +   G+ ++ S  
Sbjct: 755 FHVIDTGIGLSNSDLELIFKPFYRLNR-INNSIEGTGIGLAVAKQLTELMNGEIFVTSEK 813

Query: 799 AKGTLIEIIFPLYDTS 814
             G+   I  P  ++S
Sbjct: 814 GAGSHFWIELPCIESS 829


>gi|328953481|ref|YP_004370815.1| PAS/PAC sensor signal transduction histidine kinase [Desulfobacca
           acetoxidans DSM 11109]
 gi|328453805|gb|AEB09634.1| PAS/PAC sensor signal transduction histidine kinase [Desulfobacca
           acetoxidans DSM 11109]
          Length = 492

 Score =  313 bits (802), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 88/503 (17%), Positives = 180/503 (35%), Gaps = 28/503 (5%)

Query: 313 AYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
                 + L    ++  P    + +    +   N +FL   +    D I     L  +  
Sbjct: 12  LELQRYQTLYEMLLEAIPSSVLLINQDLRIVSVNRNFLEKNRRTISDTIGHR--LDEVFP 69

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
           A  +   +      + +             T +          +      +         
Sbjct: 70  AIIIDQMDFPG--RIRQVFEQNFRVKGERMTYRAPGIPLRIYYYSILP-FSWQGVVELAM 126

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
            +  +  +      ++      L  ++E+  D +   + EG IL+ N A  +L G+ +  
Sbjct: 127 LLMEDVTEQVRLSEEVRRVERHLALVVESAQDIVLSTDMEGRILTWNTAAERLSGFTLYQ 186

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF- 550
           +  + F  F   + P+ + +  + + +    Q  E      T     + +  I   +   
Sbjct: 187 VRGRNFFDFCVCDDPAEIRNVFSNLQAGQEAQMSEWDL--KTNHGGRIPVAWIFSPMRDL 244

Query: 551 ---SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
              ++       D++E +Q + +L  ++K+A             ++HEIR PL      +
Sbjct: 245 ISKTAGVVAVGRDLTERRQLEAQLLQSQKLA-----ALGVMAGGIAHEIRNPLAVCSSAA 299

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
           + I     G +      + A  I R       I+ +LL  ++     M    + ++L   
Sbjct: 300 QFIMQ---GDVTPEFRQQCAEKIHRGIQRASMIIENLLRFARP---SMKTDLKKINLTYL 353

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727
           +SE +SLV   A  ++I +R         I      ++Q  +N+L NAI   P GG I I
Sbjct: 354 LSETLSLVTNQARIQKIELRAQLPEYAIIINGMEGLLQQAFMNLLLNAIRAVPDGGVIDI 413

Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
           +       E  + ++DTG G+   +L     PF          G+G+GLGL +  +++  
Sbjct: 414 TLKKI-GAEAWIAIKDTGHGIEPSDLNNIFDPFYTTAP----VGQGSGLGLSICYSIIKQ 468

Query: 788 NMGKFYIFSTPAKGTLIEIIFPL 810
           + G   + S   +G+   +  P+
Sbjct: 469 HFGAITVDSQKGEGSTFVVKLPI 491



 Score = 48.9 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/258 (9%), Positives = 55/258 (21%), Gaps = 12/258 (4%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
             + D  G +   +    +  G   +++ G    D           ++   L+       
Sbjct: 160 VLSTDMEGRILTWNTAAERLSGFTLYQVRGRNFFDFCVCDDPAEIRNVFSNLQAGQ--EA 217

Query: 146 KTTLWP-IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
           + + W         +P+     P+     + +G    G            A   +  K  
Sbjct: 218 QMSEWDLKTNHGGRIPVAWIFSPMRDLISKTAGVVAVG--RDLTERRQLEAQLLQSQKLA 275

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
           +           +        S         +  +         H+     +     L  
Sbjct: 276 ALGVMAGGIAHEIRNPLAVCSSAAQFIMQGDVTPEFRQQCAEKIHRGIQRASMIIENLLR 335

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS------LSAYFDEG 318
                  + D   INL     +           +  E  +     +              
Sbjct: 336 FARP-SMKTDLKKINLTYLLSETLSLVTNQARIQKIELRAQLPEYAIIINGMEGLLQQAF 394

Query: 319 ENLTPETVDKCPIPFFVY 336
            NL    +   P    + 
Sbjct: 395 MNLLLNAIRAVPDGGVID 412



 Score = 48.9 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/316 (8%), Positives = 86/316 (27%), Gaps = 28/316 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP---NNHIGDLLKRQNTWYG 145
           I+    +  ++    +         IG RL +V   + ID       I  + ++     G
Sbjct: 35  INQDLRIVSVNRNFLEKNRRTISDTIGHRLDEVFPAIIIDQMDFPGRIRQVFEQNFRVKG 94

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIV-------HVNRVDNDPRALGK 198
           +   +   G  L +    + LP          F   G+V                    +
Sbjct: 95  ERMTYRAPGIPLRIY-YYSILP----------FSWQGVVELAMLLMEDVTEQVRLSEEVR 143

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR----MKNKVSSLTEYYAHKDDVL 254
           R+++  + + E  +        +  I +  +    L      + +  +  ++    D   
Sbjct: 144 RVERHLALVVESAQDIVLSTDMEGRILTWNTAAERLSGFTLYQVRGRNFFDFCVCDDPAE 203

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
               +  L + + +   + D  T +  +      F  +++   ++   ++     +    
Sbjct: 204 IRNVFSNLQAGQEAQMSEWDLKTNHGGRIPVAWIFSPMRDLISKTAGVVAVGRDLTERRQ 263

Query: 315 FDEGENLTPET--VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
            +     + +   +              L   + +   + +     +         +   
Sbjct: 264 LEAQLLQSQKLAALGVMAGGIAHEIRNPLAVCSSAAQFIMQGDVTPEFRQ-QCAEKIHRG 322

Query: 373 PKLSDNNAIKPVMLYR 388
            + +       +   R
Sbjct: 323 IQRASMIIENLLRFAR 338


>gi|67921588|ref|ZP_00515106.1| PAS [Crocosphaera watsonii WH 8501]
 gi|67856700|gb|EAM51941.1| PAS [Crocosphaera watsonii WH 8501]
          Length = 1249

 Score =  313 bits (802), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 95/428 (22%), Positives = 179/428 (41%), Gaps = 40/428 (9%)

Query: 405  WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD-TRINKRKMEIEVMQLCSILEATSD 463
            ++ E          +   Q    +     +   +  TR   + +E  +  L +I++   D
Sbjct: 844  YDNEQPRYWQRREIDLVKQVANQLGVAVYQSNLLRHTRKQSQTLERTLADLNAIVDNLGD 903

Query: 464  GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
            G+ +++  G I   N  +  +F      +L K            ++         L+  +
Sbjct: 904  GLLVVDSFGRITRHNPKLLSMFNVTSS-LLGKRVVDIFPSELFPLLKKP-----GLEQEE 957

Query: 524  TLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAE 579
             +      +           IIK+   +        + + DI++ +              
Sbjct: 958  VVTVEMPLANNRLGQALASRIIKQEEETGIKYLGVVILIRDITKER-------------- 1003

Query: 580  KESSHKSDFLARVSHEIRTPLTAIIGFS----EVIKNQRFGPLGN---------PRYIEY 626
                 K +FL+ VSHE+RTPLT+I+GFS    + +    F  + N          R  + 
Sbjct: 1004 AVDQMKKNFLSMVSHELRTPLTSIVGFSSLIRDKLNETIFPEIQNPDSKTSNAIERIQQN 1063

Query: 627  ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
             + +   G  +  +V+D LD++KIESGK+ L+  P+     +  AI  V    +   + +
Sbjct: 1064 LDIVVCEGERLSKLVHDFLDMTKIESGKITLNLFPIQPSTVLDWAIGSVSPLFSNSSVEL 1123

Query: 687  RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
               F+ ++P IL D   + Q+ +N++SNA+ FT  G  +        +E +++ + DTG+
Sbjct: 1124 VEDFSRDLPTILGDEDRLIQVFVNVISNALKFTEKGS-VTCRAEV-DHENLLISITDTGI 1181

Query: 747  GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
            G+   +  K   PF Q+ N    +  GTGLGL ++K +V+ + G  ++ S   +GT   I
Sbjct: 1182 GIAENDYSKVFDPFQQVGNVLTNKPPGTGLGLSISKQIVEQHGGNIWLTSKLGQGTTFFI 1241

Query: 807  IFPLYDTS 814
             FPL   +
Sbjct: 1242 SFPLTQEN 1249


>gi|298247834|ref|ZP_06971639.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297550493|gb|EFH84359.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 754

 Score =  313 bits (802), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 117/757 (15%), Positives = 246/757 (32%), Gaps = 67/757 (8%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYG 145
           W +   G ++ IS           F   G    D    +      + + + +   +T   
Sbjct: 37  WILTPAGGMQAISSSWQTLPDQQDFAYPGRGWLDAVHPMDRQQGEDALHEAIDSGHT-SE 95

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
                  +  + ++ + L  +P+   +   +     G  +          + +   +   
Sbjct: 96  LVCHIRSDDNSYHL-VHLRFIPVREASGTINEVLACG--NNLTRQMQTEQMSEAQVQLAL 152

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
               +     ++  ++     Q+     L  +  +S          D  +      + + 
Sbjct: 153 KASGVGMWDWNLLTDELIWTDQKRALFGLSPEIPISDERFLETLHPDDRERTHQRNMQAI 212

Query: 266 ESSLPEQEDFH--TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL----SAYFDEGE 319
                  +D+     + + +        + + + +    +      +          E +
Sbjct: 213 AEKKEYNKDYRTIWPDGSVHWLTDRAQVICDETGKPTRVVGATLDITELKHKEEELQEAK 272

Query: 320 NLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
           +     ++     F          Y N         K  + +            P L   
Sbjct: 273 DEVTTILESITDAFLCLDSQWRYSYLNQRMETYLGKKREEVLGKEMWK----VVPMLLGT 328

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
                     + +      A     Q   E  +             P+    +    +  
Sbjct: 329 IFEDRYRTAMATQQATHFEAFHPAFQRWVETYVY------------PQPDGLSIYFHDIS 376

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL--RKP 496
           + +  +  +     +   ++E+   GI   +R G IL  N A   L GY  ED+   +  
Sbjct: 377 ERKQIEEALRESEARFRLLMESNIIGIITTDRNGNILEANAAFLSLLGYTQEDLATGQMK 436

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--- 553
           + +     T +     + E L   + Q  E   L  TK  K +   I             
Sbjct: 437 WDIITTPQTRARDTETIEEALRTGVAQPYEIEYL--TKSGKRVPALIGRALFRREGSPPL 494

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
           +   + D +  K+ +                K  FL    HE+RTPL A+ G  ++I+ +
Sbjct: 495 FLCFVLDQTYRKEAE--------------KQKDLFLGITGHELRTPLAALRGTLQLIERR 540

Query: 614 RFGPLG-----NPRYIEYANYID-------RSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
               +       P  + +   I        R  ++   ++NDLLD+S+I SG + L  + 
Sbjct: 541 LRRFINKTDNLTPEMVSFFEGIQKNLANGVRQVDVQTRLINDLLDVSRITSGTLKLSLQR 600

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTP 720
             L   + E +  ++L   E+++L+      + P  +L D   + Q+  N ++NAI ++ 
Sbjct: 601 CDLVPIIRETVEDLRLVTPERQLLL--ELPEDTPVNVLVDQNRISQVITNYVTNAIRYSS 658

Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP--NSQQIRGEGTGLGL 778
           S   + I      N    + VRD G G++    EK  + F Q+     Q    +G GLGL
Sbjct: 659 SDQPVHIGLAVQEN-MARVWVRDHGPGLSKEAQEKVWRCFHQVKEVPVQSGSEKGLGLGL 717

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            + + +++ + G+  + STP KG+      PL + + 
Sbjct: 718 YICQILIEQHHGEVDVESTPGKGSTFWFSLPLTNENE 754


>gi|229159025|ref|ZP_04287081.1| hypothetical protein bcere0010_51960 [Bacillus cereus ATCC 4342]
 gi|228624444|gb|EEK81215.1| hypothetical protein bcere0010_51960 [Bacillus cereus ATCC 4342]
          Length = 588

 Score =  313 bits (802), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 84/372 (22%), Positives = 158/372 (42%), Gaps = 25/372 (6%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +  +   E E  +L S+L   +DG+   +R+G I+  N    K+     E  L +     
Sbjct: 233 QQARSSTESERRKLSSVLSHMTDGVIATDRKGDIILLNDPAEKMLNVSRETALDQSVLEV 292

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
           L       ++H   E  S+ L  +                  +I K+   ++     ++D
Sbjct: 293 LGIQEEFTLDHLYEEPDSVLLDFSTRNEPYILRAS-----FSVIQKETGKANGLIAVLYD 347

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           ++                E+    + +F+A VSHE+RTPLT +  + E + +  +     
Sbjct: 348 VT--------------EQERIERERREFVANVSHELRTPLTTMRSYLEALTDGAWQDPNI 393

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
                +          ++ +VN LL +SK++S +  L  E V   +  +  I   +  + 
Sbjct: 394 APQ--FLTVTQEETERMIRLVNALLQLSKLDSTEHRLMKEWVDFTDFFNNIIDRFE-MSK 450

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV-IL 739
           E+ +  + SF+     I  D   + Q+  NI+SNA+ ++P GG +          E+  +
Sbjct: 451 EQNVSFKRSFSKKSRFIDMDTDKITQVLYNIISNALKYSPEGGTVT--YRLRDRGELLEI 508

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V D G+G+    ++K  + F ++  ++  +  GTGLGL +AK M++A+ G  +  S   
Sbjct: 509 SVSDQGMGIPKENVDKIFERFYRVDKARSRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEG 568

Query: 800 KGTLIEIIFPLY 811
           KGT I    P+ 
Sbjct: 569 KGTTIYFTLPMA 580


>gi|228918077|ref|ZP_04081605.1| hypothetical protein bthur0012_52730 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228930471|ref|ZP_04093471.1| hypothetical protein bthur0010_51490 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228936745|ref|ZP_04099536.1| hypothetical protein bthur0009_51800 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228949187|ref|ZP_04111455.1| hypothetical protein bthur0007_53070 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|229124968|ref|ZP_04254142.1| hypothetical protein bcere0016_52450 [Bacillus cereus 95/8201]
 gi|228658469|gb|EEL14135.1| hypothetical protein bcere0016_52450 [Bacillus cereus 95/8201]
 gi|228810470|gb|EEM56823.1| hypothetical protein bthur0007_53070 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228822954|gb|EEM68795.1| hypothetical protein bthur0009_51800 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228829190|gb|EEM74827.1| hypothetical protein bthur0010_51490 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228841557|gb|EEM86673.1| hypothetical protein bthur0012_52730 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 588

 Score =  313 bits (802), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 84/372 (22%), Positives = 158/372 (42%), Gaps = 25/372 (6%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +  +   E E  +L S+L   +DG+   +R+G I+  N    K+     E  L +     
Sbjct: 233 QQARSSTESERRKLSSVLSHMTDGVIATDRKGDIILLNDPAEKMLNVSRETALDQSVLEV 292

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
           L       ++H   E  S+ L  +                  +I K+   ++     ++D
Sbjct: 293 LGIQEEFTLDHLYEEPDSVLLDFSTRNEPYILRAS-----FSVIQKETGKANGLIAVLYD 347

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           ++                E+    + +F+A VSHE+RTPLT +  + E + +  +     
Sbjct: 348 VT--------------EQERIERERREFVANVSHELRTPLTTMRSYLEALTDGAWQDPNI 393

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
                +          ++ +VN LL +SK++S +  L  E V   +  +  I   +  + 
Sbjct: 394 APQ--FLTVTQEETERMIRLVNALLQLSKLDSTEHRLMKEWVDFTDFFNNIIDRFE-MSK 450

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV-IL 739
           E+ +  + SF+     I  D   + Q+  NI+SNA+ ++P GG +          E+  +
Sbjct: 451 EQNVSFKRSFSKKSRFIDMDTDKITQVLYNIISNALKYSPEGGTVT--YRLRDRGELLEI 508

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V D G+G+    ++K  + F ++  ++  +  GTGLGL +AK M++A+ G  +  S   
Sbjct: 509 SVSDQGMGIPKENVDKIFERFYRVDKARSRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEG 568

Query: 800 KGTLIEIIFPLY 811
           KGT I    P+ 
Sbjct: 569 KGTTIYFTLPMA 580


>gi|309800487|ref|ZP_07694641.1| sensor protein YycG [Streptococcus infantis SK1302]
 gi|308115882|gb|EFO53404.1| sensor protein YycG [Streptococcus infantis SK1302]
          Length = 449

 Score =  313 bits (802), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 90/376 (23%), Positives = 169/376 (44%), Gaps = 33/376 (8%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           R+ +  +E E  +L SIL   +DG+   NR G I+  N    +  G   +D L +     
Sbjct: 83  RLTQENLEQESKRLHSILSYMTDGVLATNRRGQIIMINDMAKRQLGVERDDALNQNILEL 142

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SL 556
           L+      +   +         Q+ E +        + +SLR+    +   S +      
Sbjct: 143 LKIEEEYELRDLI--------TQSPELMIYSQNVNGEYISLRVRFALIRRESGFISGIVA 194

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            +HD +E ++E+ +                 F++ VSHE+RTPLT++  + E +     G
Sbjct: 195 VLHDTTEQEKEERERRL--------------FVSNVSHELRTPLTSVKSYLEAL---DEG 237

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV- 675
            L  P   ++        N ++ +V DLL +S+I++   +L  E ++    ++  ++   
Sbjct: 238 ALTEPVAPDFIKVSLDETNRMMRMVTDLLHLSRIDNETSHLDVELINFTAFITFILNRFD 297

Query: 676 --QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
             +   +EK+  +   +  N   I  D   + Q+  NIL+NAI ++P GG+I +S   T 
Sbjct: 298 KMRSQDDEKKYELVRDYPINSVWIEIDTDKMTQVIDNILNNAIKYSPDGGKITVSMKTTD 357

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
           ++ + L + D G+G+   +L K    F ++  ++     GTGLGL +AK ++  + G  +
Sbjct: 358 DQMI-LSISDQGLGIPKQDLPKIFDRFYRVDRARSRAQGGTGLGLAIAKEIIKQHKGFIW 416

Query: 794 IFSTPAKGTLIEIIFP 809
             S   KG+   I+ P
Sbjct: 417 AKSEYGKGSTFTIVLP 432


>gi|146276073|ref|YP_001166232.1| histidine kinase [Rhodobacter sphaeroides ATCC 17025]
 gi|145554314|gb|ABP68927.1| histidine kinase [Rhodobacter sphaeroides ATCC 17025]
          Length = 868

 Score =  313 bits (802), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 116/617 (18%), Positives = 231/617 (37%), Gaps = 58/617 (9%)

Query: 226 SQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES-SLPEQEDFHTINLNQYT 284
            +      + ++ +++         + +L+ ++  L  + E  ++  +     I   +  
Sbjct: 7   PRNRRDARMDIEQRLAKERRARLAAERLLEYKQRELFAANEKLAIHARALSDQIIEQRAV 66

Query: 285 KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFY 343
            K      +    ++  +L               E    +++D     F VY     L  
Sbjct: 67  VKTALSEAERLKGQNSRFL--VELERAHTAAVMAERRLWDSIDTIEDGFAVYDSHQRLVA 124

Query: 344 ANPSFLLLTKYKS------VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397
           AN ++              + D+      + L+D    + +     +     +       
Sbjct: 125 ANEAYRAHFAGVEVRLGMTLMDLLEVTVGNGLIDLGGEAPDAWCARMASRWDEDPVQPII 184

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
            R  + QW                N+   +     +  +  +             +L + 
Sbjct: 185 LRRTSGQW------------MRLVNRRARDGDMVSLLIDITEQM-----------RLRAA 221

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLF---------GYPVEDILRKPFTVFLEQNTPSV 508
           ++A  DG  + +R   ++  N    +++         G   E+ILR         +    
Sbjct: 222 IDAIPDGFVLFDRAERLVLCNDRHREIYPRSAPAMQPGARFEEILRHGLANGQFPDAAGR 281

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568
              +LT+ L+   +            + + + +   I+             DI++ K ++
Sbjct: 282 EEEWLTDRLAAFRQLGGAAE--QQLDDGRWMRV---IEHETPDGGRVGLGVDITQLKLQQ 336

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
             L  A+  AE  S  KS FLA +SHEIRTP+  I+G ++++               +A 
Sbjct: 337 AALETARAAAEAASRAKSAFLANMSHEIRTPMNGIVGMADLLCETPL----TEDQRLFAE 392

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I  SG  +L I+ND+LD SKIE+ ++ L+ EP  L+  + E   L+Q  A  K + +  
Sbjct: 393 TIRSSGEALLVIINDILDYSKIEANRLTLYPEPFDLERTIHEVAMLLQPQARAKGLDLLI 452

Query: 689 SFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT---SNEEVILRVRDT 744
            F   +P R + D   ++Q+  N++ NA+ FT +G  +I            ++ + V DT
Sbjct: 453 DFDMFLPTRFVGDPCRLRQVLTNLIGNAVKFTEAGHVLIRVVGLEVEPGRHDLHVTVEDT 512

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL- 803
           G+G+    L+     F QI      R EGTGLGL + + +++   G  ++ S   +G+  
Sbjct: 513 GIGIAPGNLDHVFGEFNQIDAEATRRFEGTGLGLAITRRLIEMMQGTVWVESELGRGSCF 572

Query: 804 -IEIIFPLY-DTSHPHD 818
              +  P   D + P +
Sbjct: 573 GFRLSLPACDDEAAPAE 589


>gi|312622291|ref|YP_004023904.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|312202758|gb|ADQ46085.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor kronotskyensis 2002]
          Length = 575

 Score =  313 bits (801), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 87/367 (23%), Positives = 168/367 (45%), Gaps = 27/367 (7%)

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
             +L S+L++   GI   +    IL+ NR    +    ++  +       +         
Sbjct: 235 RKRLTSLLDSLDIGIIFFDMNKRILTFNRGAENILETNLK--VGLSLLECVRVYELFEFL 292

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570
            +  +I   ++  ++   T      +K +S               L + DI+  K+ +  
Sbjct: 293 -FQQDINEKEIEISINNKTKFLKINKKKISYE------DNKEGILLILSDITFLKKLE-- 343

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
                         +SDF+A VSHE++TPLT+I GF E +K+           I++ N I
Sbjct: 344 ------------RIRSDFVANVSHELKTPLTSIKGFVETLKDGAID--DKDVAIKFLNII 389

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
           +     ++ ++NDLL +S+IE+  M +  E V + E V E I L+++ A +K I +    
Sbjct: 390 EVEVERLVRLINDLLYLSEIENAAMPILEEKVVVKEVVLEIIELLKIKAEKKNIQLDIKV 449

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
              +  +      +KQI +N++ NAI +    G++ ++     N  ++++V+DTG+G+  
Sbjct: 450 QEGL-EMNIYRDWLKQIFINLIDNAIVYNKENGKVWVTVEKLDN-LIVIKVKDTGIGIPG 507

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            E+E+  + F ++   +  +  GTGLGL + K +V+   GK ++ S    G+   +  P+
Sbjct: 508 REVERIFERFYRVDKGRSRKFGGTGLGLSIVKHIVELYGGKVWVESQEGIGSEFTVTIPI 567

Query: 811 YDTSHPH 817
              + PH
Sbjct: 568 VKKADPH 574


>gi|229164415|ref|ZP_04292344.1| hypothetical protein bcere0009_51730 [Bacillus cereus R309803]
 gi|228619065|gb|EEK75962.1| hypothetical protein bcere0009_51730 [Bacillus cereus R309803]
          Length = 588

 Score =  313 bits (801), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 83/372 (22%), Positives = 158/372 (42%), Gaps = 25/372 (6%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +  +   E E  +L S+L   +DG+   +R+G I+  N    K+     E  L +     
Sbjct: 233 QQARSSTESERRKLSSVLSHMTDGVIATDRKGDIILLNDPAEKMLNVSRETALDQSVLEV 292

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
           L       ++H   E  S+ L  +                  +I K+   ++     ++D
Sbjct: 293 LGIQEEFTLDHLYEEPDSVLLDFSTRNEPYILRAS-----FSVIQKETGKANGLIAVLYD 347

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           ++                E+    + +F+A VSHE+RTPLT +  + E + +  +     
Sbjct: 348 VT--------------EQERIERERREFVANVSHELRTPLTTMRSYLEALTDGAWQDPNI 393

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
                +          ++ +VN LL +SK++S +  L  E V   +  +  I   +  + 
Sbjct: 394 APQ--FLTVTQEETERMIRLVNALLQLSKLDSTEHRLMKEWVDFTDFFNNVIDRFE-MSK 450

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV-IL 739
           E+ +  + SF+     I  D   + Q+  NI+SNA+ ++P GG +          ++  +
Sbjct: 451 EQNVSFKRSFSKKSRFIDMDTDKITQVLYNIISNALKYSPEGGTVT--YRLRDRGDLLEI 508

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V D G+G+    ++K  + F ++  ++  +  GTGLGL +AK M++A+ G  +  S   
Sbjct: 509 SVSDQGMGIPKENVDKIFERFYRVDKARSRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEG 568

Query: 800 KGTLIEIIFPLY 811
           KGT I    P+ 
Sbjct: 569 KGTTIYFTLPMA 580


>gi|319939369|ref|ZP_08013729.1| histidine kinase [Streptococcus anginosus 1_2_62CV]
 gi|319811355|gb|EFW07650.1| histidine kinase [Streptococcus anginosus 1_2_62CV]
          Length = 450

 Score =  313 bits (801), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 90/404 (22%), Positives = 173/404 (42%), Gaps = 34/404 (8%)

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDT-RINKRKMEIEVMQLCSILEATSDGIAIINREG 472
            +         PE         +  +  R+    +E E  +L SIL   +DG+   NR G
Sbjct: 55  NYSEILDVQGGPEITDITNSINDLSEVIRLTHENLEQETKRLSSILSYMTDGVLATNRRG 114

Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
            I+  N   +K  G    +  +      L+      +   +T++  L +    E      
Sbjct: 115 QIIMINDMATKQLGVKESEARKMNILKLLDIEDEYDLRDLITKVPELTIDSQDE------ 168

Query: 533 TKEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
               + LSLR+    +   S +       +HD +E ++E+ +                 F
Sbjct: 169 --NGEFLSLRVRFALIRRESGFISGLVAVLHDTTEQEKEERERRL--------------F 212

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
           ++ VSHE+RTPLT++  + E +     G L  P   ++        N ++ +V+DLL +S
Sbjct: 213 VSNVSHELRTPLTSVKSYLEAL---DEGALSEPVAPDFIKVSLDETNRMMRMVSDLLSLS 269

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLV---QLYANEKRILIRTSFANNIPRILADLRSVK 705
           +I++   +L  E  +    ++  ++     +   ++K+  I   +  N   +  D   + 
Sbjct: 270 RIDNATSHLDIELTNFTAFITFILNRFDKIRSQNDDKKYEIIRDYPINSIWVEIDTDKMI 329

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           Q+  NI++NAI ++P GG+I +S   T  + + L + D G+G+   +L K    F ++  
Sbjct: 330 QVIDNIINNAIKYSPDGGKITVSMKTTDTQMI-LSISDEGLGIPKKDLPKIFDRFYRVDK 388

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           ++     G+GLGL +AK ++  + G  +  S   KG+   I+ P
Sbjct: 389 ARSRAQGGSGLGLAIAKEIIKQHNGFIWAKSEYGKGSTFTIVLP 432


>gi|260773473|ref|ZP_05882389.1| aerobic respiration control sensor protein ArcB [Vibrio
           metschnikovii CIP 69.14]
 gi|260612612|gb|EEX37815.1| aerobic respiration control sensor protein ArcB [Vibrio
           metschnikovii CIP 69.14]
          Length = 783

 Score =  313 bits (801), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 87/404 (21%), Positives = 166/404 (41%), Gaps = 17/404 (4%)

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
               +         +E E       + ++      L S ++A+ D I   N +G     N
Sbjct: 122 RIKAEEAREEAMVDLENEVYQREKTQLELAERTALLRSFIDASPDLIYYRNAKGEFSGCN 181

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
           RA+ +L G     ++         +     +     ++   +   T E+        +  
Sbjct: 182 RAMEELTGKRESQLVGLTPWDVYRKEIAQSIVETDQQVFKNNQAITYEQWLEYPDGRKHF 241

Query: 539 LSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
             LR +                 DI+E K+ +  L       EK S  K+ F++ +SHE+
Sbjct: 242 FELRKVPFYSKEGRHLGLVGFGRDITERKRHQESL-------EKASRDKTTFISTISHEL 294

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTPL  I+G S ++ + +          ++   I  S   +  I ND++D+ K +  K+ 
Sbjct: 295 RTPLNGIVGLSRMLLDTQL----TDEQRKHMQTIQVSAITLGHIFNDIIDMDKFDRRKLE 350

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNA 715
           L   P++  E V+E  SL  L A +K +         +P  I  D   ++Q+  N++SNA
Sbjct: 351 LLPAPLNFVEFVAELESLSALMAEQKGLRFDLERLTELPTWIEVDATRLRQVLWNLMSNA 410

Query: 716 IHFTPSGGQI-IISTTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGE 772
           + FT  GG +  +S        ++ + + DTG+G+  +EL+K    + Q+ + +      
Sbjct: 411 MKFTKEGGVVMSVSADINPGSADITMEIEDTGIGIPEHELDKIFAMYYQVKSGKDNLHAV 470

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           GTG+GL +++ +++   G   + S    G+   +   +   S P
Sbjct: 471 GTGIGLAVSRQLINLMAGDIEVSSEEGFGSTFTVTIRVPLVSPP 514



 Score = 42.3 bits (98), Expect = 0.33,   Method: Composition-based stats.
 Identities = 17/129 (13%), Positives = 36/129 (27%), Gaps = 5/129 (3%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTT 148
           +A G     +  + +  G    +++G+   DV               + K       +  
Sbjct: 172 NAKGEFSGCNRAMEELTGKRESQLVGLTPWDVYRKEIAQSIVETDQQVFKNNQAITYEQW 231

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           L   +G       +L  +P YS+     G  GFG           +   ++  +  +   
Sbjct: 232 LEYPDGR--KHFFELRKVPFYSKEGRHLGLVGFG--RDITERKRHQESLEKASRDKTTFI 287

Query: 209 EIKKGHSSV 217
                    
Sbjct: 288 STISHELRT 296


>gi|119191658|ref|XP_001246435.1| conserved hypothetical protein [Coccidioides immitis RS]
          Length = 757

 Score =  313 bits (801), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 104/529 (19%), Positives = 205/529 (38%), Gaps = 26/529 (4%)

Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFL 349
             ++  +    + +            +      +     PIP  +      +   + S L
Sbjct: 93  PAEDKVESHSTFTAAPETAEAKPRPKDSYRNLCKVFALTPIPTIILDSDLRIIDISNSHL 152

Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
            L K    + +            P          +    S +           +    ++
Sbjct: 153 ELFKLDLHECLGRRIFDMEPSQIPVPDVAILDSVINTAISTQNVQVMHDVEDYLS---QS 209

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD-GIAII 468
              M   P  + N+    + +     +                    +++  SD  I ++
Sbjct: 210 VFRMRATPIFETNRLLYVVLEALNITDPYLKSKIHENAYAS-ETYRVLVDTVSDYAIFML 268

Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528
           + +G I + N   + L GY  E++L K F++F  ++  +        +LSL   +  ++ 
Sbjct: 269 DTKGYITTWNAGAAILKGYTAEEVLGKHFSMFYGEDDCAQGKPRKELVLSLHDGKVEDEG 328

Query: 529 TLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
                K+       + I  +        +   + D++E K  + +L       E+ S  K
Sbjct: 329 WRYR-KDGSRFWANVTITPVHQFGHHVGFVKVVRDLTERKAAETRLI---AAYEETSKLK 384

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
           SDFLA +SHEIRTP+  ++G   ++ +       +    EYA  I+ S +++L ++ND+L
Sbjct: 385 SDFLANMSHEIRTPMNGVLGALSLLNSTAL----SQNQREYATIIEESTSVLLRLINDIL 440

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSV 704
           D SK+ SG  +L  +  S++  V+  I        E  I +++    + P  +  D    
Sbjct: 441 DYSKLSSGSFSLTTDVFSVESIVNSVIQSCPPRNPE--IEVKSIIDPDFPSHVKGDPLRF 498

Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPF 760
           +QI  N++ NA+ FT  G  I + T    +E     V + V D+G+G+ +  +     PF
Sbjct: 499 RQILQNLVGNAVKFTDKG-YIHVRTCFKEDERDDYSVTVEVIDSGIGVADEAMNTLFAPF 557

Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA-KGTLIEIIF 808
            +  NS   R +GTGLGL + K++ +   G     + P  +G++  +  
Sbjct: 558 TRSANSATKRYQGTGLGLSICKSLAELMGGAVGYRTNPDCQGSIFWLKI 606



 Score = 54.6 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 13/118 (11%), Positives = 33/118 (27%), Gaps = 9/118 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR--QNTW 143
            + +D  GY+   +       G  A +++G                   +L+        
Sbjct: 265 IFMLDTKGYITTWNAGAAILKGYTAEEVLGKHFSMFYGEDDCAQGKPRKELVLSLHDGKV 324

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFG-IVHVNRVDNDPRALGKRL 200
             +   +  +G+  +  + +   P++    +F    GF  +V                
Sbjct: 325 EDEGWRYRKDGSRFWANVTI--TPVH----QFGHHVGFVKVVRDLTERKAAETRLIAA 376


>gi|16329648|ref|NP_440376.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
 gi|1652132|dbj|BAA17056.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
          Length = 1462

 Score =  313 bits (801), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 117/751 (15%), Positives = 227/751 (30%), Gaps = 100/751 (13%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH-IDPNNHIGDLLKRQNTWYGKT 147
             D  G +  ++++  +  G    ++IG     VS   H  +        ++    W+G+ 
Sbjct: 347  TDTEGVITYVNDKFVEVSGYSREELIGNTHRLVSSGYHSPEFFQQFWQTIRAGKVWHGQI 406

Query: 148  TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                  G   +V   +  +P    N     ++   I              +  + +F  +
Sbjct: 407  NNRAKAGNTYWVDSTV--VPFLDDNGNP--YQYLAIRFEITSSKQAEKSLRESEARFRMM 462

Query: 208  HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
             +       V  +   +                            + +      L     
Sbjct: 463  ADTSPIMLWVADQDKKMTFVNQS--------------WLEFRGATLAEESGNGYLEGIHP 508

Query: 268  SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
                             ++           + + ++ +   P                  
Sbjct: 509  DDKGHYLGVYSQAFGDRRRFELEYRYRRVDQQYRWIVNVGVPRYL--------------- 553

Query: 328  KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML- 386
                       G       S L +T  K   DI        LL      +        L 
Sbjct: 554  ---------EDGKFMGYVGSCLDITDRKQAQDILQKKLNQILLMRKISQEIRRSLQPTLI 604

Query: 387  ----YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
                 R      A             +   +         Q P      G +   +    
Sbjct: 605  FQTAARQVGNVFAV------------SRCLIHNYSEATTLQVPVVAEYLGGQFTSLL--- 649

Query: 443  NKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
               ++ +E     +I++      +  ++++     T +A  + F       +R  +    
Sbjct: 650  -AGEIAVEQAYDPTIIQGDRAMAVVDLDQDLNSTHT-KAFYQRFQVKSFLAVRTSY---- 703

Query: 502  EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDI 561
                 +     L +     +    E   L +  E+  ++L                    
Sbjct: 704  --QGKANGIIALHQCDRQRVWTADEIELLEAIAEQMGIALAQAALLEKERERRRELA--- 758

Query: 562  SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
               K  + + +     AE  +  K +FLA +SHEIRTP+  +IG +E++         N 
Sbjct: 759  --QKNLELEKATW--AAEAANRAKGEFLAMMSHEIRTPMNGVIGMTELLIMTDL----NL 810

Query: 622  RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
            + ++Y   I +SG  +L I+ND+LD SKIE+ K+ L  +   L   +   + +    A  
Sbjct: 811  QQLDYVQTIRQSGETLLTIINDILDFSKIEADKLVLETQAFELRPLIETVLEMFGPIARA 870

Query: 682  KRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQI--------------- 725
            K + +        P RIL D   ++QI  N++ NA+ FT  G  +               
Sbjct: 871  KHLELTYGIDPQTPARILGDQVRLRQILSNLIGNALKFTEKGEVVLTVKGEPFDPAESYH 930

Query: 726  IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
             I      +  +   +RDTG+G+     ++  K F Q+ +S   +  GTGLGL +++ + 
Sbjct: 931  TILNLPHPSHRICFNLRDTGIGIPLDRQDRLFKSFSQVDSSTTRKYGGTGLGLVISQRLT 990

Query: 786  DANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
                G   + S P  G+       L     P
Sbjct: 991  QMMGGVLTVTSEPGVGSNFRFCI-LTTAQAP 1020



 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 45/447 (10%), Positives = 119/447 (26%), Gaps = 34/447 (7%)

Query: 163 LAALPIYSRNREFSGF--------RGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214
           L  +P++  +R F GF        +  G V     +   +  G R       L   +   
Sbjct: 172 LVYVPLFIGDR-FDGFVVGVFQLDQFIGSVRPLSGNKPDQDSGLRS----FGLRIFEGNQ 226

Query: 215 SSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQED 274
                   D          L   N +       +     L      L     S       
Sbjct: 227 LIYNDVPDDWEQDIVVTQELAWANSLPQAEAMTSRWQLQLVPGPILLDQYGSSQWILFSG 286

Query: 275 FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF 334
                           + +++ + S      +          +   +    +D+  I   
Sbjct: 287 LLMAWAVAIAVYYLQKSSKHSEQLSESIKQQQKVEEFLKSTLQELAVQKTALDEAAIVAI 346

Query: 335 VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394
             + G + Y N  F+ ++ Y   + I    G +  L +         +            
Sbjct: 347 TDTEGVITYVNDKFVEVSGYSREELI----GNTHRLVSSGYHSPEFFQQFWQTIRAGKVW 402

Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
                    +    N+  +        +          I  E   ++  ++ +     + 
Sbjct: 403 HGQI---NNRAKAGNTYWVDSTVVPFLDDNGNPYQYLAIRFEITSSKQAEKSLRESEARF 459

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
             + + +   + + +++  +   N++  +  G  + +     +   +  +         +
Sbjct: 460 RMMADTSPIMLWVADQDKKMTFVNQSWLEFRGATLAEESGNGYLEGIHPDDKGHYLGVYS 519

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLS-LRIIIKKLPFSS---CYSLTMHDISEWKQEKNK 570
           +      R+  E        +++    + + + +         Y  +  DI++ KQ ++ 
Sbjct: 520 QAF--GDRRRFELEYRYRRVDQQYRWIVNVGVPRYLEDGKFMGYVGSCLDITDRKQAQDI 577

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIR 597
           L                 + ++S EIR
Sbjct: 578 LQKKLNQIL--------LMRKISQEIR 596



 Score = 60.0 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/400 (9%), Positives = 102/400 (25%), Gaps = 23/400 (5%)

Query: 69  DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID 128
           +SE  F        +   W  D    +  +++   +  G    +  G    +        
Sbjct: 454 ESEARFRMMADTSPI-MLWVADQDKKMTFVNQSWLEFRGATLAEESGNGYLEGIHPDDKG 512

Query: 129 PNNHI-GDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187
               +       +  +  +     ++    Y  I    +P Y  + +F G+   G     
Sbjct: 513 HYLGVYSQAFGDRRRFELEYRYRRVD--QQYRWIVNVGVPRYLEDGKFMGY--VGSCLDI 568

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247
                 + + ++   +   + +I +      +      +        R    V +++   
Sbjct: 569 TDRKQAQDILQKKLNQILLMRKISQEIRRSLQPTLIFQTAA------RQVGNVFAVSRCL 622

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
            H      T + P++               I + Q          +  +    +   +  
Sbjct: 623 IHNYSEATTLQVPVVAEYLGGQFTSLLAGEIAVEQAYDPTIIQGDRAMAVVDLDQDLNST 682

Query: 308 HPSL---SAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364
           H               +      K      ++            + L     ++ I    
Sbjct: 683 HTKAFYQRFQVKSFLAVRTSYQGKANGIIALHQCDRQRVWTADEIEL-----LEAIAEQM 737

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
           G++  L    L +    +   L + +     A+         +   LAM           
Sbjct: 738 GIA--LAQAALLEKERERRRELAQKNLELEKATWAAEAANRAKGEFLAMMSHEIRTPMNG 795

Query: 425 PENMPQNGIEPEDVDTRIN-KRKMEIEVMQLCSILEATSD 463
              M +  I  +    +++  + +      L +I+    D
Sbjct: 796 VIGMTELLIMTDLNLQQLDYVQTIRQSGETLLTIINDILD 835


>gi|332524127|ref|ZP_08400357.1| signal transduction histidine kinase-like protein [Rubrivivax
           benzoatilyticus JA2]
 gi|332107466|gb|EGJ08690.1| signal transduction histidine kinase-like protein [Rubrivivax
           benzoatilyticus JA2]
          Length = 1062

 Score =  313 bits (801), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 124/634 (19%), Positives = 239/634 (37%), Gaps = 16/634 (2%)

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244
           H +RV     A  +   +                     +    +P         V  +T
Sbjct: 292 HASRVPRHAIAAFEARQRGAGAADFTVHMRGPASSPDALVIDLIAPRESNERALGVDIMT 351

Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
              A     L  +      +    L + +     N        Y G    ++    E  +
Sbjct: 352 IPAARAALELARQSGEPTATAAFRLSQSDPKDDENGFVLYYPLYAGGRPADAATRAERFT 411

Query: 305 HRNHP--SLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEI 362
                                  +  C     V +   +     +     + +  + +  
Sbjct: 412 GVLFVTVRAERLLSSLPGNDAAGLHWC----LVDTEPGIERVRLAGPTGCEDERPEGLRA 467

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
              ++  L A  L       P       +T     +           +L +T        
Sbjct: 468 EHRIA--LAARTLELRVTSTPAWERERQQTNAWVFSVAGLAAAAVLGALLLTVTGRAHRI 525

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
               +     +  E  + R  + +M     +L  IL+    G+   + +G +L TN  + 
Sbjct: 526 GLAVDERTAELRREIGERRRAEEEMREVQDRLRGILDNVPIGVMFADLDGRLLDTNPCLC 585

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
            + G   E+++R         +        L  + +     T+ + T     +   L  R
Sbjct: 586 TMLGRSAEELVRCSLDDISHPDEREADRQALRTLRAGG-ASTVRRQTRLLRADGAALHAR 644

Query: 543 IIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
            +   L  +S      +    DI+E ++ + +   A   AE  +  K++FL+R+SHE+RT
Sbjct: 645 TLFTLLHDASGQPWRLAGVAEDITEHRRLE-ESERALHRAEAANRAKTEFLSRMSHELRT 703

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
           PL A+IGF++++   R  PL  P   E++  + R+G  +L ++ND LD++++E+G + L 
Sbjct: 704 PLNAMIGFAQLLGLDRDPPLA-PHQREWSTQMLRAGWHLLAMINDTLDLARLETGAVQLD 762

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718
             P+ L  AV  +I ++   A    + +    A     +LAD   +KQ+  N+LSNA+ +
Sbjct: 763 LRPLDLRSAVGASIEMIATAAERMGVTVDAELAPEALAVLADDTRLKQVLTNLLSNAVKY 822

Query: 719 TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
              GG +++ +    +E V LRVRDTG+GMT  ++    +P+ ++   Q    EGTG+GL
Sbjct: 823 NRPGGTVVVESLAPDDEHVQLRVRDTGLGMTPEQVAGLFQPYNRLGREQS-TIEGTGIGL 881

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
            +++ + +   G     ST   G++  +  P  +
Sbjct: 882 VISRRLAELMGGTLDGDSTAGSGSVFTLTLPRAE 915



 Score = 70.4 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 69/241 (28%), Gaps = 11/241 (4%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN--TWYGKT 147
           D  G L + +  L   +G  A +++   L D+S     + +      L+     T   +T
Sbjct: 572 DLDGRLLDTNPCLCTMLGRSAEELVRCSLDDISHPDEREADRQALRTLRAGGASTVRRQT 631

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
            L   +G  L+       L  +  + +   +R  G+              + L +  +  
Sbjct: 632 RLLRADGAALHARTLFTLL--HDASGQP--WRLAGVAEDITEHRRLEESERALHRAEAAN 687

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
               +  S +  E     +       L   ++   L  +       +    + LL     
Sbjct: 688 RAKTEFLSRMSHELRTPLNAMIGFAQLLGLDRDPPLAPHQREWSTQMLRAGWHLLAMIND 747

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP-SLSAYFDEGENLTPETV 326
           +L    D   +             L++    S E ++       ++   +          
Sbjct: 748 TL----DLARLETGAVQLDLRPLDLRSAVGASIEMIATAAERMGVTVDAELAPEALAVLA 803

Query: 327 D 327
           D
Sbjct: 804 D 804


>gi|270294837|ref|ZP_06201038.1| two-component system sensor histidine kinase [Bacteroides sp. D20]
 gi|270274084|gb|EFA19945.1| two-component system sensor histidine kinase [Bacteroides sp. D20]
          Length = 462

 Score =  313 bits (801), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 97/374 (25%), Positives = 173/374 (46%), Gaps = 13/374 (3%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIIN-REG-IILSTNRAVSKLFGYPVEDILRKPFT 498
           ++ +R  E  +  L  IL+       + +  +G      N+   +LF     + + K   
Sbjct: 89  KLRERDRERYLQLLEGILDNLPIAAKVKDVNDGMRYTFWNKKAEELFECSAREAIGKT-D 147

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL-T 557
                   +++     E++   + Q   +       EE+         KL     + + T
Sbjct: 148 FETMPEAAALIRKEDEELVKTGIPQEGIRRFFTKKNEERFTFQNNNFIKLSDGRKWIVYT 207

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
             DI++ K  + KL  AK+ AE+ +  KS FLA +SHEIRTPL AI+GFS ++  +    
Sbjct: 208 AWDITDLKIMERKLRLAKEEAEESNRIKSAFLANMSHEIRTPLNAIVGFSSILTTE---- 263

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
           +     +EY + I+R+  L+L ++ND+LD+SKIE+G +   +  V +++ VSE      +
Sbjct: 264 VSEEERVEYLDIIERNNELLLQLINDILDLSKIEAGTLEYVYANVDINKMVSEIEQATSI 323

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737
               K + + T        +  D R + Q+  N +SNA+ FT +G  I I      N  +
Sbjct: 324 RLTNKDVRLVTVTPLPGLLLYTDQRRITQVFNNFISNALKFTAAGS-ITIGYGMPENSYI 382

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
              V DTG G+++   +     F ++ + +    +GTGLGL +++ +V    G+  + S 
Sbjct: 383 RFYVTDTGTGISSENAQGIFNRFVKLDSFK----QGTGLGLAISQNIVKELKGEIGVESQ 438

Query: 798 PAKGTLIEIIFPLY 811
            +KG+      P Y
Sbjct: 439 LSKGSTFWFTLPFY 452


>gi|194291671|ref|YP_002007578.1| sensor hybrid histidine kinase [Cupriavidus taiwanensis LMG 19424]
 gi|193225575|emb|CAQ71521.1| putative sensor hybrid histidine kinase [Cupriavidus taiwanensis
           LMG 19424]
          Length = 649

 Score =  313 bits (801), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 91/368 (24%), Positives = 168/368 (45%), Gaps = 18/368 (4%)

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL-- 513
           ++L+     + + +    +++ NR+  +L G     +L +P    L  +  +     L  
Sbjct: 80  ALLDGIPQPVYLRDAALRLVACNRSYEELLGATRGSLLGQPLDAVLSAHPLATDMAELAR 139

Query: 514 --TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM----HDISEWKQE 567
              ++++       ++        ++ L +   +  L  +      +     D++E  + 
Sbjct: 140 DYRQVIADGAPLHADRCLRL---GDRTLHVLNWLTPLRGADGTVKGLAGGCVDLTERHEM 196

Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
             +L+ AK  AE  +  KS FLA VSHEIRTP+ AI G  E+   Q   P          
Sbjct: 197 LAELAQAKTEAEAANRAKSAFLASVSHEIRTPMNAITGMLELTLAQSLLP---DEQRLQL 253

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
               +S   +L +++D+LD+SK+E+GK  +H  P SL   V + + +    A +K + + 
Sbjct: 254 LTAHKSAVGLLALIDDILDLSKLEAGKFRIHPAPTSLPGLVDDTLLIFGPGAAQKGLPLT 313

Query: 688 TSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNE--EVILRVRD 743
           +  +  +  +   D    +QI  N++SNA+ FT SG   + +    T +   +VIL V D
Sbjct: 314 SGVSAALAPLHQVDALRFRQILANLVSNAVRFTDSGTVHVRLDAQSTGDGIQDVILTVSD 373

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TG+G+      +  +PF Q+    +    GTGLGL + + +  A  G+  + S P +GT 
Sbjct: 374 TGIGIPFEAQARLFQPFEQVHGCARSHAGGTGLGLAICRRLAKAMGGRITLTSQPGRGTR 433

Query: 804 IEIIFPLY 811
           + +  PL 
Sbjct: 434 VVVSLPLA 441



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/134 (8%), Positives = 28/134 (20%), Gaps = 5/134 (3%)

Query: 324 ETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
             +D  P P ++      L   N S+  L        +                     +
Sbjct: 80  ALLDGIPQPVYLRDAALRLVACNRSYEELLGATRGSLLGQPLDAVLSAHPLATDMAELAR 139

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
                 +D   + A           + +L +                  G   +  +   
Sbjct: 140 DYRQVIADGAPLHAD----RCLRLGDRTLHVLNWLTPLRGADGTVKGLAGGCVDLTERHE 195

Query: 443 NKRKMEIEVMQLCS 456
              ++     +  +
Sbjct: 196 MLAELAQAKTEAEA 209



 Score = 48.5 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/242 (8%), Positives = 54/242 (22%), Gaps = 17/242 (7%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDV-----SDILHIDPNNHIGDLLKRQNTWY 144
           DA   L   +    + +G     ++G  L  V           +       ++       
Sbjct: 93  DAALRLVACNRSYEELLGATRGSLLGQPLDAVLSAHPLATDMAELARDYRQVIADGAPL- 151

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
                  +    L+V   L   P+   +    G  G  +       ++  A   +   + 
Sbjct: 152 HADRCLRLGDRTLHVLNWL--TPLRGADGTVKGLAGGCV--DLTERHEMLAELAQAKTEA 207

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
              +  K    +    +         P +        +L +     +  L+         
Sbjct: 208 EAANRAKSAFLASVSHEIRT------PMNAITGMLELTLAQSLLPDEQRLQLLTAHKSAV 261

Query: 265 EESSLPEQ-EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
              +L +   D   +   ++       +L     ++                        
Sbjct: 262 GLLALIDDILDLSKLEAGKFRIHPAPTSLPGLVDDTLLIFGPGAAQKGLPLTSGVSAALA 321

Query: 324 ET 325
             
Sbjct: 322 PL 323


>gi|298504148|gb|ADI82871.1| sensor histidine kinase, HAMP and PAS domain-containing [Geobacter
           sulfurreducens KN400]
          Length = 762

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 92/384 (23%), Positives = 186/384 (48%), Gaps = 25/384 (6%)

Query: 434 EPEDVDTRINKR--KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
             E ++ R+ +R   +++E+ +L +IL + ++GIA+ +R+G ++  N A  +LF      
Sbjct: 396 MNEFLERRVEERTAALQVEMGRLEAILTSMAEGIAVTDRDGRVILFNPAAQQLFEMVPHR 455

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
           ++ +P      Q     +  ++T +     + T+ +  +      K L + +        
Sbjct: 456 VVGQPILDICNQGEFCRLVEHITSMGENRDQATVRE--VDLDARGKKLKVTLAPLVDGDG 513

Query: 552 S--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                 +++ D++     + ++             K++F++ VSHE++TPLT+I G  ++
Sbjct: 514 HFAGVVMSVRDVT----AEEEV----------DRMKTEFISTVSHELKTPLTSIKGSLQL 559

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           I ++  G     +  E      R+   ++ +VND+LDI+KIESGKM     P S  E V 
Sbjct: 560 IVDKSRGFTDVEK--ELLGVCLRNTERLIRLVNDILDIAKIESGKMEFALSPHSPAELVE 617

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
            ++  ++ +A E  + +    + ++P I  D   + Q+  N+++NA+ F+P G  + IS 
Sbjct: 618 WSVRELEGFAREHGVTVVNEVSADLPAIYGDGDRLGQVLTNLIANAVKFSPRGAVVTISA 677

Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
             + N  V + V+D G  +   +  K  K F QI +  + +  GTGLGL + K +V+ + 
Sbjct: 678 EQSDN-FVAVSVKDRGREIQWADRGKLFKRFQQIDSGDRRQHGGTGLGLAICKEIVERHH 736

Query: 790 GKFYIFST-PAKGTLIEIIFPLYD 812
           G+   +S     G +     P+++
Sbjct: 737 GRI-FYSEGIGGGNVFTFTVPIHE 759



 Score = 41.6 bits (96), Expect = 0.55,   Method: Composition-based stats.
 Identities = 29/255 (11%), Positives = 73/255 (28%), Gaps = 14/255 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI-DPNNHIGDLLKRQNTWYGKT 147
            D  G +   +    +       +++G  + D+ +         HI  + + ++    + 
Sbjct: 432 TDRDGRVILFNPAAQQLFEMVPHRVVGQPILDICNQGEFCRLVEHITSMGENRDQATVRE 491

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                 G  L V +     P+   +  F+G     +V   R       + +   +  S +
Sbjct: 492 VDLDARGKKLKVTL----APLVDGDGHFAG-----VVMSVRDVTAEEEVDRMKTEFISTV 542

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
               K   +  K    +   +S        +    L        + L      +L   + 
Sbjct: 543 SHELKTPLTSIKGSLQLIVDKS----RGFTDVEKELLGVCLRNTERLIRLVNDILDIAKI 598

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
              + E   + +      +     L+  ++E    + +     L A + +G+ L     +
Sbjct: 599 ESGKMEFALSPHSPAELVEWSVRELEGFAREHGVTVVNEVSADLPAIYGDGDRLGQVLTN 658

Query: 328 KCPIPFFVYSHGNLF 342
                      G + 
Sbjct: 659 LIANAVKFSPRGAVV 673


>gi|242803435|ref|XP_002484173.1| sensor histidine kinase/response regulator Fos-1/TcsA [Talaromyces
           stipitatus ATCC 10500]
 gi|218717518|gb|EED16939.1| sensor histidine kinase/response regulator Fos-1/TcsA [Talaromyces
           stipitatus ATCC 10500]
          Length = 713

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 100/531 (18%), Positives = 203/531 (38%), Gaps = 35/531 (6%)

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLT 352
             ++ S  +L     P         ++         P+P   + +   +   + S L  +
Sbjct: 45  EPARRSNSHLIQPLDP-FEQASPAPDSELGRIFSLSPLPTVVLDAKLRVAQISDSHLSFS 103

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
            Y   + I  +         P  S ++  + +                         S A
Sbjct: 104 GYTRSEVIGHSIYDLPAHKVPAASTSSLHRVISNAIKTGEVQIIDDIEIDD----GTSFA 159

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKR---KMEIEVMQLCSILEATSD-GIAII 468
           +  +           +       +       ++   ++         +++   D  I ++
Sbjct: 160 VYSVHIAPIQDQGNLLYVVLTAHDVTKESSVRQSNKELAYMNETYKILVDTVKDYAIFML 219

Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH--YLTEILSLDLRQTLE 526
           +  G + + N   + + GY  +DI+ + F+ F  ++  +       L   L       +E
Sbjct: 220 DTSGCVATWNSGAAIMKGYSSDDIIGRHFSTFYGEDDRAADKPGKELEVCLREGK---VE 276

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
                  K+       ++I  +  +     +     D++E K  +++L       E+ S 
Sbjct: 277 DEGWRYRKDGSRFWANVMITPVYTAGRHVGFVKVTRDLTERKAAESRLI---AAFEESSK 333

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
            KSDFLA +SHEIRTP+  ++   +++         + +  EY N I+ +G+++L I+ND
Sbjct: 334 LKSDFLANMSHEIRTPMHGMLMSIQMLAATNV----DEKQKEYINIIEDTGSVLLQIIND 389

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLR 702
           +LD SK+ SG   +    V + E V   +   Q       + +R  +++ +P  +  D  
Sbjct: 390 VLDYSKLSSGTFTITPGVVDVKEVVGAVLRNCQSSVKP-GVDLRVHYSDQLPKHLKGDPL 448

Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNE------EVILRVRDTGVGMTNYELEKA 756
             +QI  N++SNA+ FT  G  + +S   T +       EV   V DTG+G+        
Sbjct: 449 RYRQIIQNLISNAVKFTDEGS-VEVSVKVTEDPQDSSTYEVTTMVVDTGIGVPVDAANSL 507

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA-KGTLIEI 806
             PF +  ++ + R +GTGLGL + K++ +   G     S    +G+   +
Sbjct: 508 FTPFTRFADTSRKRYQGTGLGLSICKSLAELMDGSVGFASNSNCRGSTFWL 558



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/142 (14%), Positives = 43/142 (30%), Gaps = 10/142 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH--IDPNNHIGDLLKRQNTW 143
            + +D  G +   +       G  +  +IG              D      ++  R+   
Sbjct: 216 IFMLDTSGCVATWNSGAAIMKGYSSDDIIGRHFSTFYGEDDRAADKPGKELEVCLREGKV 275

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +   +  +G+      ++   P+Y+  R        G V V R   + +A   RL   
Sbjct: 276 EDEGWRYRKDGS--RFWANVMITPVYTAGRHV------GFVKVTRDLTERKAAESRLIAA 327

Query: 204 FSHLHEIKKGHSSVEKEKYDIF 225
           F    ++K    +    +    
Sbjct: 328 FEESSKLKSDFLANMSHEIRTP 349


>gi|150399364|ref|YP_001323131.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus vannielii SB]
 gi|150012067|gb|ABR54519.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus vannielii SB]
          Length = 641

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 75/253 (29%), Positives = 140/253 (55%), Gaps = 5/253 (1%)

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            K+   +L  + +  ++  + KSD +A VSHE+RTPLT+I G+ E++ +   G + N   
Sbjct: 389 LKKHAEELKESYEELKELDNLKSDLIAIVSHELRTPLTSIKGYVELVLDGTMGTI-NESQ 447

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            +     D +   +  ++  +LD+SKIE G++ ++ E +++ + VS+ I  +   A EK 
Sbjct: 448 RKCLQVADDNIIRLRRLIESMLDLSKIERGELEMYREAMNVKDTVSDVIEYLTPLATEKN 507

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
           I ++    + +  I AD   + Q+  N++ NAI F+P+   I+I    T N +V + V+D
Sbjct: 508 IKLKQDIKDLL--INADKDRITQVFTNLIENAIKFSPANESIMIIGKETENGDVHITVKD 565

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
            G G+   +LEK    F Q+ +S + +  G+GLGL + K+++ A+ G  ++ S   +G+ 
Sbjct: 566 NGAGIPKKDLEKIFDQFYQVDSSTKRKKGGSGLGLAVCKSIIQAHGGTIWVESELGRGST 625

Query: 804 IEIIFP--LYDTS 814
             I+ P  +Y+ S
Sbjct: 626 FHIVLPALIYEES 638


>gi|322834644|ref|YP_004214671.1| multi-sensor hybrid histidine kinase [Rahnella sp. Y9602]
 gi|321169845|gb|ADW75544.1| multi-sensor hybrid histidine kinase [Rahnella sp. Y9602]
          Length = 779

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 94/446 (21%), Positives = 184/446 (41%), Gaps = 17/446 (3%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L             L+    +    L        KA +    +  + ++ E
Sbjct: 81  EESRQRLARLVDKLEEMRHRDLELNQQLKDNITQLNQEIADRVKAEEARLAV-VDKLKLE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
                  + ++  +   L S L+A+ D +   N +      NRA+  L G   + ++   
Sbjct: 140 MQHREQAQIELSQQSALLRSFLDASPDLVYYRNEDKEFSGCNRAMELLTGKSEKQLIGLT 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII--KKLPFSSCY 554
                  +    +     ++   ++  T E+  +     +    LR +    ++      
Sbjct: 200 PNDVYTPDIAEKVVETDEKVFRHNVSLTYEQWLVYPDGRKACFELRKVPFYDRIGKRHGL 259

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+ ++ L +        S  K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 260 MGFGRDITERKRYQDALEN-------ASREKTTFISTISHELRTPLNGIVGLSRILLDTE 312

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                +     Y   I  S   + +I ND++++ KIE  K+ L  +PV   E +S+  +L
Sbjct: 313 L----DKEQHSYLKTIHVSAITLGNIFNDIIEMDKIERRKVQLDNQPVDFTEFLSDLENL 368

Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
             L A  K +         +PR I  D   ++QI  N++ NA+ FT  G +I++S  +  
Sbjct: 369 SGLLAQPKGLKFIMEPDLPLPRSITTDGTRLRQILWNLIGNAVKFTREG-EIVLSVHYEP 427

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMGKF 792
           N+ +   VRD+G+G+   E +K    + Q+ +    +   GTG+GL ++K +  A  G  
Sbjct: 428 NDMLRFVVRDSGLGIPQDEQDKIFAMYYQVKDQNGGKPATGTGIGLAVSKRLAQAMGGDI 487

Query: 793 YIFSTPAKGTLIEIIFPLYDTSHPHD 818
            + S P +G+   ++        P D
Sbjct: 488 TVSSVPGQGSCFTLVVRAPTLDSPAD 513



 Score = 41.6 bits (96), Expect = 0.64,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 36/124 (29%), Gaps = 5/124 (4%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN-TWYGKTTLWPIE 153
               +  +    G    ++IG+   DV      +      + + R N +   +  L   +
Sbjct: 177 FSGCNRAMELLTGKSEKQLIGLTPNDVYTPDIAEKVVETDEKVFRHNVSLTYEQWLVYPD 236

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
           G       +L  +P Y R  +  G  GFG           +   +   ++ +        
Sbjct: 237 GRKACF--ELRKVPFYDRIGKRHGLMGFG--RDITERKRYQDALENASREKTTFISTISH 292

Query: 214 HSSV 217
               
Sbjct: 293 ELRT 296


>gi|255527099|ref|ZP_05393987.1| multi-sensor hybrid histidine kinase [Clostridium carboxidivorans
           P7]
 gi|296187887|ref|ZP_06856280.1| PAS domain S-box domain-containing protein [Clostridium
           carboxidivorans P7]
 gi|255509201|gb|EET85553.1| multi-sensor hybrid histidine kinase [Clostridium carboxidivorans
           P7]
 gi|296047508|gb|EFG86949.1| PAS domain S-box domain-containing protein [Clostridium
           carboxidivorans P7]
          Length = 924

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 93/395 (23%), Positives = 171/395 (43%), Gaps = 13/395 (3%)

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
                 +    I  +  +++    ++E     L  I E+  D I  I+  G I     +V
Sbjct: 114 RVNDNFIGTIVILDDITNSKKVSEELEHSEKSLREITESMKDLICKIDINGKIQYIGPSV 173

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
            ++ GY ++D++ K     +                      +  +      ++   + +
Sbjct: 174 KQILGYNLKDLIGKYIFSNIHPEDLDKTMSSFNRGFIDK--SSTGQELRVRKQDGHYIWV 231

Query: 542 RIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
           +     L   +       +   DI++ K+ + +L   K   E     KS+FLA VS+EI+
Sbjct: 232 KFTYNPLYDENGNVSGAIIVAKDITKIKELEEELKKFKLEVESAKLAKSEFLANVSNEIK 291

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
            PL +II  ++V+    F    N    EY + I +S   +L  V+++L  SKIESGK+ L
Sbjct: 292 NPLNSIIDMTDVML---FNTSLNEEQNEYMSIIKKSSESLLKTVDNMLGFSKIESGKVRL 348

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAI 716
                ++ + + E +  + + A+EK + +      ++   ++ D   +KQI +NI+ NAI
Sbjct: 349 EEFEFNIKDIIYETLDALAIRAHEKNLELMIYIHPDLDENLIGDYFKLKQIIINIVGNAI 408

Query: 717 HFTPSGGQ-IIIS--TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
            FT  G   + +   T       + + V DTG+GMT   + K  K F  + N +  +  G
Sbjct: 409 KFTEKGEVAVYVEKVTDKLDKISLKISVIDTGIGMTEENINKLNKYFNGVGNCKLKKYAG 468

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            GLGL L+K +++   G+ +  S   KGT   +  
Sbjct: 469 NGLGLILSKQLIELMDGEIWFESKYKKGTSFYLTL 503



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/141 (14%), Positives = 55/141 (39%), Gaps = 4/141 (2%)

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
           E  +  SI ++  + + I++ + +I + N   ++LF     ++         E+   S +
Sbjct: 20  EKNKYLSIFQSIPNPVIILDDQNVISNINDTATELFKVMDFNVK---VDNLNEKKKFSWI 76

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISEWKQEK 568
              L    S +  +        S  +     +++   ++  +     + + DI+  K+  
Sbjct: 77  EDELKYFCSGNYSEISFIKEYKSYNDNLSFKVKLKKIRVNDNFIGTIVILDDITNSKKVS 136

Query: 569 NKLSHAKKIAEKESSHKSDFL 589
            +L H++K   + +    D +
Sbjct: 137 EELEHSEKSLREITESMKDLI 157



 Score = 48.9 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/112 (14%), Positives = 37/112 (33%), Gaps = 5/112 (4%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGK 146
            ID +G ++ I   + + +G     +IG  +        +D   +        +++   +
Sbjct: 159 KIDINGKIQYIGPSVKQILGYNLKDLIGKYIFSNIHPEDLDKTMSSFNRGFIDKSSTGQE 218

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
             +   +G   Y+ +     P+Y  N   SG     +        +     K
Sbjct: 219 LRVRKQDGH--YIWVKFTYNPLYDENGNVSGA--IIVAKDITKIKELEEELK 266


>gi|170691461|ref|ZP_02882626.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia graminis C4D1M]
 gi|170143666|gb|EDT11829.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia graminis C4D1M]
          Length = 1490

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 120/711 (16%), Positives = 228/711 (32%), Gaps = 47/711 (6%)

Query: 130  NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRV 189
            +  +      +        +   +       +   A      +   +G    G++   R+
Sbjct: 376  DPRLQKARHTRAYESYPLVMVGRDDEPAARSLGDFAARRVVVSSHVAGA---GLLAFQRI 432

Query: 190  DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS-------S 242
              D  A+   LD+    +   +           D   ++     L++   V        +
Sbjct: 433  PKDHLAIAPSLDEALRMVASGEADVVVENVAAVDTMLKRQYSGVLKILGTVGESDALDFA 492

Query: 243  LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302
            +    +    ++      +  +E   + ++                   L          
Sbjct: 493  VRPDLSPLAGLIDRALLAMPPAERQRIRQKWVTGNAPATGTWSVTAVRLLPVLIGIGVAL 552

Query: 303  L-----------SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLL 350
            L             R             N     +   P P       G     N ++  
Sbjct: 553  LVTLRAYLLLQREVRRRKQTELELALQLNFQETMMKMVPYPLVAQDLQGRYIAVNGAYEA 612

Query: 351  LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
                     +                    ++  +L   D   +                
Sbjct: 613  ACGRGREAVLGRTTMDVQTWGEANSDVLEKMRLDLLQGGDMAQVELQFERGPGDLRHGLF 672

Query: 411  LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470
                           + +   G   +  D R  + +      +L  +  +    +  + R
Sbjct: 673  WTSIC-----RGNDGQPVCSLGTMVDITDIRRAEMRARDTERRLFDVTRSLPAVVFQLRR 727

Query: 471  --EGIILSTN-RAVSKLF----GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
              +G           +L     G     +    F   +      V+   L     L+   
Sbjct: 728  AADGAYSFPYIGGAPRLLLGESGIRQTCLEHADFAR-ICDEDRPVVLAELERSARLETPV 786

Query: 524  TLEKITLGSTKEEKLLSLRIIIKKLPFSSC-YSLTMHDISEWKQEKNKLSHAKKIAEKES 582
             +E    G   E K     ++ ++       +S    D S       +L+ A+ +AE  S
Sbjct: 787  LVEFRL-GREHEFKWTRAELVPRREADGGVVWSGYWVDASIEHARAEELARARDLAEAAS 845

Query: 583  SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
              K DF A +SHEIRTP+  ++G  EV++        N    E    I  S   +L I++
Sbjct: 846  RAKDDFFAMMSHEIRTPMNGVLGLVEVLERTPL----NSDQGEMLGMIHESAGALLQILD 901

Query: 643  DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADL 701
            DLLD SKIE+G++ +  EP+ L E V  A+ L+   A+EK + +R   A+++   +  D 
Sbjct: 902  DLLDYSKIEAGRLTIEAEPIDLREMVDNAVGLLAGRAHEKGLKVRVDIASDVAATLRGDS 961

Query: 702  RSVKQIALNILSNAIHFTPSGGQIIISTTHTSN----EEVILRVRDTGVGMTNYELEKAM 757
              ++Q+  N+L NAI FTP G  + +     +     + + + V DTG+G+      K  
Sbjct: 962  VRLRQVLFNLLGNAIKFTPEG-HVDVRVAAVAQTGELQTIEVIVEDTGIGIPAELQAKLF 1020

Query: 758  KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            +PF Q  +S   R  GTGLGL + + ++    G   + S P +GT + +  
Sbjct: 1021 EPFVQAESSTTRRFGGTGLGLTICRKLIQLMDGSLALDSEPGRGTRMTVRL 1071



 Score = 55.4 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 40/381 (10%), Positives = 92/381 (24%), Gaps = 22/381 (5%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN---NHIGDLLKRQNTWYGK 146
           D  G    ++       G     ++G    DV      + +       DLL+  +    +
Sbjct: 598 DLQGRYIAVNGAYEAACGRGREAVLGRTTMDVQTWGEANSDVLEKMRLDLLQGGDMAQVE 657

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRG--FGIVHVNRVDNDPRALGKRLDKKF 204
                  G   +     +       + +     G    I  + R +   R   +RL    
Sbjct: 658 LQFERGPGDLRHGLFWTSIC--RGNDGQPVCSLGTMVDITDIRRAEMRARDTERRLFDVT 715

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
             L  +           Y         P L +       T         +  E  P++ +
Sbjct: 716 RSLPAVVFQLRRAADGAYSFPYI-GGAPRLLLGESGIRQTCLEHADFARICDEDRPVVLA 774

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
           E      + +   +   +  ++  F   +       E                      E
Sbjct: 775 ELE-RSARLETPVLVEFRLGREHEFKWTRAELVPRREADGGVVWSGYWVDASIEHARAEE 833

Query: 325 TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
                 +            A   F  +  ++    +    GL  +L+   L+ +      
Sbjct: 834 LARARDLAEAASR------AKDDFFAMMSHEIRTPMNGVLGLVEVLERTPLNSDQGEMLG 887

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN- 443
           M++ S    +     L          L +   P +        +        +   ++  
Sbjct: 888 MIHESAGALLQILDDLLDYSKIEAGRLTIEAEPIDLREMVDNAVGLLAGRAHEKGLKVRV 947

Query: 444 ------KRKMEIEVMQLCSIL 458
                    +  + ++L  +L
Sbjct: 948 DIASDVAATLRGDSVRLRQVL 968


>gi|262197814|ref|YP_003269023.1| signal transduction histidine kinase with CheB and CheR activity
            [Haliangium ochraceum DSM 14365]
 gi|262081161|gb|ACY17130.1| signal transduction histidine kinase with CheB and CheR activity
            [Haliangium ochraceum DSM 14365]
          Length = 1453

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 117/636 (18%), Positives = 223/636 (35%), Gaps = 28/636 (4%)

Query: 183  IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL---RMKNK 239
            +  VN            L     HL E  + H+     +  +               +++
Sbjct: 695  LFTVNSEHQAKIQELSELTHDMDHLLESTEVHTIFLDRELRVRRFTPKVGDAFNFLPRDR 754

Query: 240  VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
              S+ ++  +            +     S+  +       +     + Y G  Q  +   
Sbjct: 755  GRSIEDFTHNLGYKDIPVDLARVLETGKSIDREVTGPEDKIYLLRLRPYCGDDQTINGVV 814

Query: 300  FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVD 358
               +               E      V       ++ +  G      P +   T  +S +
Sbjct: 815  LTLIDISELKHAEKDMRLSEQRYRALVRASADMLWITNASGAFAEPQPEWERYTG-QSWE 873

Query: 359  DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
              +  G L  +        ++         +  +  +A  RL ++               
Sbjct: 874  SHQGFGWLQAIHPDD---RDDIQGIWRHAVAIGSVYSAEGRLWSV--KHRQYRRFHVRAA 928

Query: 419  EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
                   E     G   +       +R++  +  QL SI+   S  I + + +G  L+TN
Sbjct: 929  PLRGDDGEIREWVGNVADVQARWSAERELRRKETQLASIMRNASAFIYLKDEKGRYLATN 988

Query: 479  RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
            +  +   G   E+I            T   M       +S +L    E+I      E + 
Sbjct: 989  QRFATWLGRSSEEIHGCTDFDIFPTETAERMRLGDKLAMSGELFHEDEEI----EYEGRE 1044

Query: 539  LSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
            ++       +          +    DI+E    + +     +        +  FLA +SH
Sbjct: 1045 VTWLTTKFPVKDEDGATEGVAGISTDITERTLAEGRREIELER-------RDRFLAMLSH 1097

Query: 595  EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
            E+R PL  I     V+       L  P    +   + R  + +  +++DLLD+++    +
Sbjct: 1098 ELRNPLAGITSAVGVLSLAGKEKLPPPALRAF-EVLKRQTSHMAHLLDDLLDVTRFVRDR 1156

Query: 655  MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714
            ++LH   + L E V  A++LV   A  K I +          +  D   ++Q+ +N+L+N
Sbjct: 1157 LSLHRVLLDLREVVEAAVTLVTERAQTKNITLSLELPPMPVPLHGDALRLQQVIVNLLTN 1216

Query: 715  AIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
            A+ FTP+GG++ +    T +E V L V D+GVGM++ ELE+A + F Q   S      G 
Sbjct: 1217 AVKFTPAGGRVGVVLVSTDSENV-LTVEDSGVGMSDAELERAFELFYQGDESLDRPDSGM 1275

Query: 775  GLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFP 809
            G+GL L + +V  + G+    S  P +G +  +  P
Sbjct: 1276 GVGLALVRRLVLMHEGEVSAASPGPNQGCVFTVRLP 1311



 Score = 71.2 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 38/368 (10%), Positives = 93/368 (25%), Gaps = 11/368 (2%)

Query: 86   TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH-IDPNNHIGDLLKRQNTWY 144
             W  +A G   E   E  +  G       G             D        +   + + 
Sbjct: 848  LWITNASGAFAEPQPEWERYTGQSWESHQGFGWLQAIHPDDRDDIQGIWRHAVAIGSVYS 907

Query: 145  GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
             +  LW ++         + A P+   + E       G V   +         +R + + 
Sbjct: 908  AEGRLWSVKHRQYRRFH-VRAAPLRGDDGEIR--EWVGNVADVQARWSAERELRRKETQL 964

Query: 205  SHLHEIKKGHSSVEKEKYDIFS--QQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL- 261
            + +         ++ EK    +  Q+      R   ++   T++     +  +  +    
Sbjct: 965  ASIMRNASAFIYLKDEKGRYLATNQRFATWLGRSSEEIHGCTDFDIFPTETAERMRLGDK 1024

Query: 262  LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
            L        E E+              F  +++    +          +     +    +
Sbjct: 1025 LAMSGELFHEDEEIEYEGREVTWLTTKF-PVKDEDGATEGVAGISTDITERTLAEGRREI 1083

Query: 322  TPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
              E  D+  +    +   N      S + +      + +     L       + + + A 
Sbjct: 1084 ELERRDRF-LAMLSHELRNPLAGITSAVGVLSLAGKEKLP-PPALRAFEVLKRQTSHMAH 1141

Query: 382  KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
                L    R        LH +  +    +        +  Q         + P  V   
Sbjct: 1142 LLDDLLDVTRFVRD-RLSLHRVLLDLREVVEAAVTLVTERAQTKNITLSLELPPMPVPLH 1200

Query: 442  INKRKMEI 449
             +  +++ 
Sbjct: 1201 GDALRLQQ 1208



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/254 (13%), Positives = 64/254 (25%), Gaps = 9/254 (3%)

Query: 85   FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144
            F +  D  G     ++     +G  + ++ G    D+      +    +GD L      +
Sbjct: 974  FIYLKDEKGRYLATNQRFATWLGRSSEEIHGCTDFDIFPTETAER-MRLGDKLAMSGELF 1032

Query: 145  GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIV---HVNRVDNDPRALGKRLD 201
             +      EG      +     P+   +    G  G                  L +R  
Sbjct: 1033 HEDEEIEYEGR-EVTWLTTK-FPVKDEDGATEGVAGISTDITERTLAEGRREIELERRDR 1090

Query: 202  KKFSHLHEIKKGHSSVEKEKYDI---FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
                  HE++   + +      +     ++ PPP LR    +   T + AH  D L    
Sbjct: 1091 FLAMLSHELRNPLAGITSAVGVLSLAGKEKLPPPALRAFEVLKRQTSHMAHLLDDLLDVT 1150

Query: 259  YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
              +           +    +        +   T           +    H          
Sbjct: 1151 RFVRDRLSLHRVLLDLREVVEAAVTLVTERAQTKNITLSLELPPMPVPLHGDALRLQQVI 1210

Query: 319  ENLTPETVDKCPIP 332
             NL    V   P  
Sbjct: 1211 VNLLTNAVKFTPAG 1224


>gi|229176140|ref|ZP_04303633.1| hypothetical protein bcere0006_52080 [Bacillus cereus MM3]
 gi|228607375|gb|EEK64704.1| hypothetical protein bcere0006_52080 [Bacillus cereus MM3]
          Length = 588

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 84/372 (22%), Positives = 158/372 (42%), Gaps = 25/372 (6%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +  +   E E  +L S+L   +DG+   +R+G I+  N    K+     E  L +     
Sbjct: 233 QQARSSTESERRKLSSVLSHMTDGVIATDRKGDIILLNDPAEKMLNVSRETALDQSVLEV 292

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
           L       ++H   E  S+ L  +                  +I K+   ++     ++D
Sbjct: 293 LGIQEEFTLDHLYEEPDSVLLDFSTRNEPYILRAS-----FSVIQKETGKANGLIAVLYD 347

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           ++                E+    + +F+A VSHE+RTPLT +  + E + +  +     
Sbjct: 348 VT--------------EQERIERERREFVANVSHELRTPLTTMRSYLEALTDGAWQDPNI 393

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
                +          ++ +VN LL +SK++S +  L  E V   +  +  I   +  + 
Sbjct: 394 APQ--FLTVTQEETERMIRLVNALLQLSKLDSTEHRLMKEWVDFTDFFNNIIDRFE-MSK 450

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV-IL 739
           E+ +  + SF+     I  D   + Q+  NI+SNA+ ++P GG +          E+  +
Sbjct: 451 EQNVSFKRSFSKKSRFIDMDTDKITQVLYNIISNALKYSPEGGTVT--YRLRDRGELLEI 508

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V D G+G+    ++K  + F ++  ++  +  GTGLGL +AK M++A+ G  +  S   
Sbjct: 509 SVSDQGMGIPKENVDKIFERFYRVDKARSRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEG 568

Query: 800 KGTLIEIIFPLY 811
           KGT I    P+ 
Sbjct: 569 KGTTIYFTLPMA 580


>gi|78486252|ref|YP_392177.1| PAS/PAC sensor signal transduction histidine kinase [Thiomicrospira
           crunogena XCL-2]
 gi|78364538|gb|ABB42503.1| PAS/PAC sensor signal transduction histidine kinase [Thiomicrospira
           crunogena XCL-2]
          Length = 1118

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 98/546 (17%), Positives = 204/546 (37%), Gaps = 21/546 (3%)

Query: 276 HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV 335
              N + Y  +     + +   +  +Y+S R   +     ++             + ++ 
Sbjct: 453 RAKNGDLYWVESSIVPILDEHGQPQKYISIRTDVTHLKQTEQRLIEAQSLAK---MGYWE 509

Query: 336 YSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394
                     +     +  +               +    +    A +       + +  
Sbjct: 510 ADLINGALDWSDYIYDIFGFDKAHFSPSVEAFKKAIHPDDVELVEASE------REASIS 563

Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
                +H I         +  +         E +  +G   +  D +  +  ++    +L
Sbjct: 564 GVHDVVHRIIRPDGQIRYVHELGQGHRK-NGELIRLSGTVQDITDLKEAEAALKKSEQRL 622

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL--RKPFTVFLEQNTPSVMNHY 512
                  + G    N +   L  +  +S LFG    ++      F   +  +    +   
Sbjct: 623 NLSQRFANIGTWDWNIKTNELFWSERISPLFGGEQAELEISYDSFLNAVHPDDRQKVVEA 682

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSL--RIIIKKLPFSSCYSLTMHDISEWKQEKNK 570
           +T  +       +E   +      + +      +I +    +     + DI+  K+ +  
Sbjct: 683 VTACIEQGTEYDIEHRVVWKDGSVRWMHEKGDTVIGQDGSPTNMLGVVQDITRRKEAEEH 742

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           L  A + AEK    KS+FL+ +SHE+RTPL +IIGFS+++           +     ++I
Sbjct: 743 LIQALERAEKADKAKSEFLSSMSHELRTPLNSIIGFSDLLSMADL----PEKEQHQVDHI 798

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT-S 689
             SG+ +L ++N LL++SKIE G++ L    V L++ V   +S V   A +  + +    
Sbjct: 799 SESGHHLLALINQLLELSKIEQGEVELKMTDVVLEDTVHYCLSTVDPMAQKYLVELERPD 858

Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749
           + +    + AD   +KQ+ LN LSNAI +    G+++++ T     +V + V DTG G+ 
Sbjct: 859 WKSFDYHVYADELKLKQVMLNFLSNAIKYNRPDGKVMLAATLLETGKVRISVTDTGYGIP 918

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             +       + ++   +    EGTG+GL + + +V    G     S   +G+   + FP
Sbjct: 919 KDKQSNVFNSYDRL-GHESSTIEGTGIGLNITQQLVFLMGGDIGFSSQENEGSCFWVDFP 977

Query: 810 LYDTSH 815
           L     
Sbjct: 978 LSTIHQ 983



 Score = 91.2 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 39/373 (10%), Positives = 90/373 (24%), Gaps = 22/373 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147
            D  G + E+++   +  G    +++G     V+  +H       +   +   + W G+ 
Sbjct: 391 TDKQGRIIEVNDMFCRISGYPRDELLGQDHRKVNSGIHSKTFFKEMWQTISSGHAWTGEI 450

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH- 206
                 G      ++ + +PI   + +   +    I                        
Sbjct: 451 CNRAKNGDLY--WVESSIVPILDEHGQPQKY--ISIRTDVTHLKQTEQRLIEAQSLAKMG 506

Query: 207 --LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
               ++  G        YDIF          ++       +   H DDV   E      S
Sbjct: 507 YWEADLINGALDWSDYIYDIFGFDKAHFSPSVEA-----FKKAIHPDDVELVEASEREAS 561

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQ---NNSKESFEYLSHRNHPSLSAYFDEGENL 321
                         +       +     +      + S       +     A   + E  
Sbjct: 562 ISGVHDVVHRIIRPDGQIRYVHELGQGHRKNGELIRLSGTVQDITDLKEAEAALKKSEQR 621

Query: 322 TPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
              +     I  + ++   N  + +     L   +  +        S L           
Sbjct: 622 LNLSQRFANIGTWDWNIKTNELFWSERISPLFGGEQAEL--EISYDSFLNAVHPDDRQKV 679

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
           ++ V       T        H + W   +   M         Q        G+  +    
Sbjct: 680 VEAVTACIEQGTEYDIE---HRVVWKDGSVRWMHEKGDTVIGQDGSPTNMLGVVQDITRR 736

Query: 441 RINKRKMEIEVMQ 453
           +  +  +   + +
Sbjct: 737 KEAEEHLIQALER 749



 Score = 76.2 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 67/215 (31%), Gaps = 8/215 (3%)

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF-PENM 428
            D P LS      P           A   RL            +     +  ++   E +
Sbjct: 293 FDVPALSTAIRQLPNAKRLMVLNYQAIPERLRRFNRLAHFEADIAVSKLQTVDEACAEVL 352

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
            +   + + V           +     + L+   + +++ +++G I+  N    ++ GYP
Sbjct: 353 ARLAHQRDVVFLSSETDNALQKTADFKTGLDF-HNIVSVTDKQGRIIEVNDMFCRISGYP 411

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            +++L +                 + + +S     T         K   L  +   I  +
Sbjct: 412 RDELLGQDHRKVNSGIHSKTFFKEMWQTISSGHAWTG--EICNRAKNGDLYWVESSIVPI 469

Query: 549 PFSSC----YSLTMHDISEWKQEKNKLSHAKKIAE 579
                    Y     D++  KQ + +L  A+ +A+
Sbjct: 470 LDEHGQPQKYISIRTDVTHLKQTEQRLIEAQSLAK 504



 Score = 67.7 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 33/368 (8%), Positives = 94/368 (25%), Gaps = 30/368 (8%)

Query: 228 QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287
           Q  P  + M  +                     L+     ++PE+        +      
Sbjct: 278 QDTPDLVMMDAEEDCFDVPALSTAIRQLPNAKRLMVLNYQAIPERLRRFNRLAHFEADIA 337

Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET------VDKCPIPFFVYSHGNL 341
                  +   +       +   +     E +N   +T      +D   I       G +
Sbjct: 338 VSKLQTVDEACAEVLARLAHQRDVVFLSSETDNALQKTADFKTGLDFHNIVSVTDKQGRI 397

Query: 342 FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401
              N  F  ++ Y   + +              +      K +    S            
Sbjct: 398 IEVNDMFCRISGYPRDELLGQ----DHRKVNSGIHSKTFFKEMWQTISSGHAWTGEICNR 453

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
                  +   +        ++  +      I  +    +  ++++ IE   L  +    
Sbjct: 454 A---KNGDLYWVESSIVPILDEHGQPQKYISIRTDVTHLKQTEQRL-IEAQSLAKM---- 505

Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEILSL 519
             G    +     L  +  +  +FG+         + F   +  +   ++     E    
Sbjct: 506 --GYWEADLINGALDWSDYIYDIFGFDKAHFSPSVEAFKKAIHPDDVELVEASEREASIS 563

Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS----LTMHDISEWKQEKNKLSHAK 575
            +   + +I      + ++  +   + +    +        T+ DI++ K+ +  L  ++
Sbjct: 564 GVHDVVHRIIR---PDGQIRYVH-ELGQGHRKNGELIRLSGTVQDITDLKEAEAALKKSE 619

Query: 576 KIAEKESS 583
           +       
Sbjct: 620 QRLNLSQR 627


>gi|22297980|ref|NP_681227.1| two-component sensor histidine kinase [Thermosynechococcus
           elongatus BP-1]
 gi|22294158|dbj|BAC07989.1| two-component sensor histidine kinase [Thermosynechococcus
           elongatus BP-1]
          Length = 652

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 73/373 (19%), Positives = 154/373 (41%), Gaps = 27/373 (7%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            +++ E  +L +++   +DG  +++ +  I+  N    +LF +   +++ +         
Sbjct: 276 EELQAEKAKLDTLVSTIADGAILLDTDMRIILVNPTAQRLFNWEGMNVIGQNALDCFPAP 335

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK---KLPFSSCYSLTMHDI 561
               +   L +  S    +  E          + + + +      +       ++T+ DI
Sbjct: 336 VCEKLTCPLYKA-SRGESEGGEFRVTLQEPSSRSVRILLTTVMDVQREKPKGIAITIQDI 394

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           +                 + +  K+  ++ VSHE+RTPL  I    E I+ +    L   
Sbjct: 395 TR--------------EVELNEAKAQLISNVSHELRTPLFNIKSIIETIQ-EYGSSLSEK 439

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
              E+    +   + +  +VND LDIS++ESG+    F  V + + + + +   QL A  
Sbjct: 440 EQQEFLETANHETDRLTRLVNDFLDISRLESGR-PYQFGSVQMAQVIDQIMRTYQLNAAN 498

Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST------THTSNE 735
           K I +     N +P +  +   +     N++ NA+ FTP  G++ I        +    E
Sbjct: 499 KSITLTAEVENPLPPVWGNYDLLIGALTNLVGNALKFTPENGRVTIRAYVWHPSSDPEQE 558

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            V + V DTG+G+   +  +  + F ++ N +    EGTGLGL + + ++  +  + ++ 
Sbjct: 559 RVRIEVADTGMGIAPEDQPRVFERFFRVEN-RVHTLEGTGLGLAIVQDIIHKHNTQIHLI 617

Query: 796 STPAKGTLIEIIF 808
           S    G+      
Sbjct: 618 SELGVGSTFWFDL 630


>gi|46201130|ref|ZP_00055703.2| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 879

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 80/509 (15%), Positives = 178/509 (34%), Gaps = 24/509 (4%)

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAG 364
                +       E       +  P+  F     G   YAN  +L L      + +   G
Sbjct: 294 AERQRIQQALAASEARYRMLTEHSPVGVFQADPEGTCLYANERWLDLAGRSRDEML---G 350

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
                +  P   +  A                 A +  ++ +  +   +       ++  
Sbjct: 351 AKWCRVVHPDDREAVAALWQSHVSGQGE---FLAEMRLMRGDG-SIRWVRGHAAALSDSE 406

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI-INREGIILSTNRAVSK 483
                  G   +    +  +R++ +   +      A+ D + I +  +G  +  N   S 
Sbjct: 407 GPAGGLVGTIEDITAAKEAERRLLLSEEKFAKAFRASPDAMVISLAEDGRYIELNDTFSS 466

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           + GY  ++++            P      +         Q +   T    K  +     I
Sbjct: 467 MLGYGRDELMGHTALEMGVWALPEDRAALVAAARRDG--QVVNFETRLRRKNGETFDTLI 524

Query: 544 II--KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
            +    L    C      DISE K  + +        +  +     F    SH+++ PL 
Sbjct: 525 SVQEVVLDDQDCLLFICRDISERKAMEARGKELLARLDASNKELEQFAYVTSHDLQEPLR 584

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
            I G++++I+ +  G L      E+  ++      +  ++ DLL+ S+++  +++  F  
Sbjct: 585 MIAGYAQLIERRYRGRLDKD-ADEFIAFLVDGAMRMQAMIRDLLEYSRVD--RLSGQFTC 641

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF--T 719
            S+ + + +A + +     E    I       +P + AD   + ++  N++ NA+ +   
Sbjct: 642 FSMGDVLDDARANLGAALAEAGGTIEV---GPMPEVNADRSQMLRLFQNLIGNALKYRSA 698

Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
               ++ +S   T+   V   V D G+G+     ++    F ++    +   +GTG+GL 
Sbjct: 699 ERPPKVRVSAEQTARGWV-FSVADNGIGIDPAYFDRIFLVFQRLH--TREHYDGTGIGLA 755

Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           + K +V+ + G  ++ S P +G       
Sbjct: 756 ICKKIVERHSGHIWVESRPGEGCDFRFSL 784



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/267 (10%), Positives = 63/267 (23%), Gaps = 9/267 (3%)

Query: 68  LDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI 127
             SE  +        V   +  D  G     +E      G    +M+G + C V      
Sbjct: 304 AASEARYRMLTEHSPVG-VFQADPEGTCLYANERWLDLAGRSRDEMLGAKWCRVVHPDDR 362

Query: 128 DPNNHIGDL-LKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHV 186
           +    +    +  Q  +  +  L   +G+     +   A  +        G    G +  
Sbjct: 363 EAVAALWQSHVSGQGEFLAEMRLMRGDGSIR--WVRGHAAALSDSEGPAGGL--VGTIED 418

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSV---EKEKYDIFSQQSPPPHLRMKNKVSSL 243
                +        ++KF+           +   E  +Y   +          ++++   
Sbjct: 419 ITAAKEAERRLLLSEEKFAKAFRASPDAMVISLAEDGRYIELNDTFSSMLGYGRDELMGH 478

Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303
           T        + +     +  +         +      N  T        +    +    L
Sbjct: 479 TALEMGVWALPEDRAALVAAARRDGQVVNFETRLRRKNGETFDTLISVQEVVLDDQDCLL 538

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCP 330
                 S     +         +D   
Sbjct: 539 FICRDISERKAMEARGKELLARLDASN 565



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/265 (10%), Positives = 66/265 (24%), Gaps = 26/265 (9%)

Query: 70  SENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCD--VSDILHI 127
           SE  F             ++   G   E+++     +G    +++G    +  V  +   
Sbjct: 432 SEEKFAKAFRASPDAMVISLAEDGRYIELNDTFSSMLGYGRDELMGHTALEMGVWALPE- 490

Query: 128 DPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187
           D    +    +       +T L    G      I +  + +  ++          I    
Sbjct: 491 DRAALVAAARRDGQVVNFETRLRRKNGETFDTLISVQEVVLDDQD------CLLFICRDI 544

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247
                  A GK L  +    ++  +  + V                     +   +   Y
Sbjct: 545 SERKAMEARGKELLARLDASNKELEQFAYVTSHDL---------------QEPLRMIAGY 589

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
           A   +     +      E  +           + +   +  +  +   S +   +     
Sbjct: 590 AQLIERRYRGRLDKDADEFIAFLVDGAMRMQAMIRDLLE--YSRVDRLSGQFTCFSMGDV 647

Query: 308 HPSLSAYFDEGENLTPETVDKCPIP 332
                A           T++  P+P
Sbjct: 648 LDDARANLGAALAEAGGTIEVGPMP 672


>gi|227112764|ref|ZP_03826420.1| aerobic respiration control sensor protein ArcB [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 789

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 91/440 (20%), Positives = 183/440 (41%), Gaps = 21/440 (4%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L             L+  Q     +     I      +    +  + ++ E
Sbjct: 81  EESRQRLAKLVAKLEEMRHRDLELNA-QLQENIAQLNQEIADRIKAEDARALVMSRLKEE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
                  + ++E +   L S L+A+ D +   N +      NRA+  L G   + ++   
Sbjct: 140 MSRREQAQIELEQQSALLRSFLDASPDLVYYRNEDKEFSGCNRAMELLVGKSQKQLIGLT 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII--KKLPFSSCY 554
                  +    +     ++   ++  T E+  +     +    LR +    ++      
Sbjct: 200 PQDVYSPDIAEKVMETDEKVFRHNVSLTYEQWLVYPDGRKACFELRKVPFYDRMGKRHGL 259

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+ ++ L +        S  K+ F++ +SHE+RTPL  I+G S ++ + +
Sbjct: 260 MGFGRDITERKRYQDALEN-------ASREKTTFISTISHELRTPLNGIVGLSRILLDTQ 312

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                +P   +Y   I  S   + +I ND++++ K E  K+ L  +P+     + +  +L
Sbjct: 313 L----DPEQQKYLKTIHVSAITLGNIFNDVIEMDKQERRKVQLDNQPIDFTGFLVDLENL 368

Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSG-----GQIIIS 728
             L A  K + +       +P+ ++ D   ++QI  N+LSNA+ FTP G     G+I++ 
Sbjct: 369 GGLLAEPKGLKLIMDQHQPLPQKVITDGTRLRQILWNLLSNAVKFTPKGENGKKGEIVVR 428

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDA 787
             H   + +   V D+G+G+   ELEK    + Q+ +    +   GTG+GL ++K +   
Sbjct: 429 VWHEKGDRLRFEVEDSGMGIPADELEKIFAMYYQVKDQHGGKPATGTGIGLAVSKRLAQN 488

Query: 788 NMGKFYIFSTPAKGTLIEII 807
             G   + ST  KG+   + 
Sbjct: 489 MGGDIQVSSTQGKGSCFTLT 508



 Score = 44.2 bits (103), Expect = 0.079,   Method: Composition-based stats.
 Identities = 23/226 (10%), Positives = 48/226 (21%), Gaps = 10/226 (4%)

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHT--INLNQYTKKQYFGTLQNNSK 297
           +S + E        L      L       L            LNQ    +          
Sbjct: 73  LSVVVEQLEESRQRLAKLVAKLEEMRHRDLELNAQLQENIAQLNQEIADRIKAEDARALV 132

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKS 356
            S                ++   L    +D  P   +  +        N +  LL     
Sbjct: 133 MSRLKEEMSRREQAQIELEQQSALLRSFLDASPDLVYYRNEDKEFSGCNRAMELLVGKSQ 192

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
              I        L      S + A K +           +      + +           
Sbjct: 193 KQLIG-------LTPQDVYSPDIAEKVMETDEKVFRHNVSLTYEQWLVYPDGRKACFELR 245

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
                ++  +     G   +  + +  +  +E    +  + +   S
Sbjct: 246 KVPFYDRMGKRHGLMGFGRDITERKRYQDALENASREKTTFISTIS 291



 Score = 40.8 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 37/124 (29%), Gaps = 5/124 (4%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN-TWYGKTTLWPIE 153
               +  +   +G    ++IG+   DV      +      + + R N +   +  L   +
Sbjct: 177 FSGCNRAMELLVGKSQKQLIGLTPQDVYSPDIAEKVMETDEKVFRHNVSLTYEQWLVYPD 236

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
           G       +L  +P Y R  +  G  GFG           +   +   ++ +        
Sbjct: 237 GRKACF--ELRKVPFYDRMGKRHGLMGFG--RDITERKRYQDALENASREKTTFISTISH 292

Query: 214 HSSV 217
               
Sbjct: 293 ELRT 296


>gi|294634692|ref|ZP_06713224.1| sensor histidine kinase/response regulator [Edwardsiella tarda ATCC
           23685]
 gi|291091868|gb|EFE24429.1| sensor histidine kinase/response regulator [Edwardsiella tarda ATCC
           23685]
          Length = 778

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 91/450 (20%), Positives = 188/450 (41%), Gaps = 21/450 (4%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L            +L+    +    L        KA +    +  + ++ E
Sbjct: 81  EESRQRLSKLVNKLEEMRHRDLQLNQQLKDNITQLNQEIADRVKAEEARLQVL-DTLQHE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
                + + ++E +   L S L+++ D +   N  G     NRA+  L G   + ++   
Sbjct: 140 IDQRELAQVELEQQSALLRSFLDSSPDLVYYRNENGEFSGCNRAMELLTGKSEKQLIGLT 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII--KKLPFSSCY 554
                +++    +     ++   ++  T E+  +     +    LR +    ++      
Sbjct: 200 PRDVYDEDIAQKVIETDEKVFRHNVSLTYEQWLVYPDGRKACFELRKVPFYDRVGKRHGL 259

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+ ++ L +        S  K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 260 MGFGRDITERKRYQDALEN-------ASRDKTTFISTISHELRTPLNGIVGLSRILLDTE 312

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                N   ++Y   I  S   + +I ND++++ K+E  K+ L  + +     +++  +L
Sbjct: 313 L----NDEQLKYLKTIHVSAITLGNIFNDIIEMDKLERRKVQLDNQEIDFTGFLTDLENL 368

Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
             L    K +    +    +P  I+AD   ++QI  N++ NA+ FT  GG + +      
Sbjct: 369 SGLLVQPKGLNFTLTPEAGLPHKIMADGTRLRQILWNLIGNAVKFTQQGG-VSVRVWREP 427

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMGKF 792
           ++++   VRDTG+G+   E +K    + Q+ +    +   GTG+GL ++K +  A  G  
Sbjct: 428 SDKLFFEVRDTGIGIPRDEQDKIFAMYYQVKDRNGGKPATGTGIGLAVSKRLAQAMGGDI 487

Query: 793 YIFSTPAKGTLIEIIF--PLYDT--SHPHD 818
            + S   +G    +    PL     S P D
Sbjct: 488 VVSSVAGEGACFTLSIRAPLVAEALSEPQD 517



 Score = 42.7 bits (99), Expect = 0.26,   Method: Composition-based stats.
 Identities = 23/226 (10%), Positives = 52/226 (23%), Gaps = 10/226 (4%)

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
           +S + E        L      L       L   +           +       +    + 
Sbjct: 73  LSVVVEQLEESRQRLSKLVNKLEEMRHRDLQLNQQLKDNITQLNQEIADRVKAEEARLQV 132

Query: 300 FEYLSHRNHPSLSA--YFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKS 356
            + L H       A    ++   L    +D  P   +    +G     N +  LLT    
Sbjct: 133 LDTLQHEIDQRELAQVELEQQSALLRSFLDSSPDLVYYRNENGEFSGCNRAMELLTGKSE 192

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
              I        L       ++ A K +           +      + +           
Sbjct: 193 KQLIG-------LTPRDVYDEDIAQKVIETDEKVFRHNVSLTYEQWLVYPDGRKACFELR 245

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
                ++  +     G   +  + +  +  +E       + +   S
Sbjct: 246 KVPFYDRVGKRHGLMGFGRDITERKRYQDALENASRDKTTFISTIS 291



 Score = 41.6 bits (96), Expect = 0.56,   Method: Composition-based stats.
 Identities = 19/127 (14%), Positives = 37/127 (29%), Gaps = 5/127 (3%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN-TWYGKTTLW 150
           +G     +  +    G    ++IG+   DV D           + + R N +   +  L 
Sbjct: 174 NGEFSGCNRAMELLTGKSEKQLIGLTPRDVYDEDIAQKVIETDEKVFRHNVSLTYEQWLV 233

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
             +G       +L  +P Y R  +  G  GFG           +   +   +  +     
Sbjct: 234 YPDGRKACF--ELRKVPFYDRVGKRHGLMGFG--RDITERKRYQDALENASRDKTTFIST 289

Query: 211 KKGHSSV 217
                  
Sbjct: 290 ISHELRT 296


>gi|241895844|ref|ZP_04783140.1| histidine protein kinase; sensor protein [Weissella
           paramesenteroides ATCC 33313]
 gi|241870887|gb|EER74638.1| histidine protein kinase; sensor protein [Weissella
           paramesenteroides ATCC 33313]
          Length = 627

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 82/396 (20%), Positives = 166/396 (41%), Gaps = 32/396 (8%)

Query: 423 QFPENMPQNGIEPEDVDTRINKRK--MEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
           +  + + +   +   +  RI +    M+ E  +L S+LE  +DG+   +R G I   N A
Sbjct: 235 RTNDEIGKLAQDVNVLAERIEETTNSMDFERRRLDSVLEHMTDGVIATDRRGNINIINIA 294

Query: 481 VSKLFGYPVED-ILRKPFTVFLEQNTPSVMNHYLTEILSLDLR-QTLEKITLGSTKEEKL 538
             ++ G         +     L       +   L     L L   T E   +        
Sbjct: 295 ALRMTGLSENQKANGRSILDILRIADQYSLRDLLDNRHELLLDFSTDEHPLMIRA----- 349

Query: 539 LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
               +I +   F S   + +HD++E ++ + +              +  F++ VSHE+RT
Sbjct: 350 -YFSLIERASGFISGLVIVLHDVTEQQRTERE--------------RRQFVSNVSHELRT 394

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
           PLT++  + + +++             +          ++ ++NDLL++S+++SG M L 
Sbjct: 395 PLTSVKSYVDALQDGAV--EDPEVAHNFLQVAQDETTRMIHMINDLLELSRMDSGTMKLE 452

Query: 659 FEPVSLDEAVSEAISLVQLYAN-----EKRILIRTSFANNIPRILADLRSVKQIALNILS 713
            E +++    +  +    +        EK   I+         +  D     Q+  NI++
Sbjct: 453 KEYINIAALFNYILDRFDMIIANDDKPEKYYTIKRMIPQLQIWVEIDTSKFTQVIDNIMN 512

Query: 714 NAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
           NAI ++P GG I        + EV+L + D G+G+    +++    F ++  ++     G
Sbjct: 513 NAIKYSPDGGVITARLEDRDS-EVVLSITDQGLGIPKSNMKQIFDRFFRVDKARSRAQGG 571

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           TGLGL ++K +++   G+ ++ ST  +G+   I  P
Sbjct: 572 TGLGLAISKEIIERFNGRVWVESTEGEGSTFSIALP 607


>gi|225155782|ref|ZP_03724269.1| Histidine kinase [Opitutaceae bacterium TAV2]
 gi|224803434|gb|EEG21670.1| Histidine kinase [Opitutaceae bacterium TAV2]
          Length = 409

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 81/404 (20%), Positives = 157/404 (38%), Gaps = 29/404 (7%)

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG 472
           +                 N +  +       +     ++ QL + L +  + + +++   
Sbjct: 24  LQENHAIDPAWRDLCTTANHLVEDINRLDKQRA---GQLAQLEATLGSLQEAVLVVDAAN 80

Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
            IL  N+A+S +F      + ++           +    Y+  +     R   E      
Sbjct: 81  TILLANKALSAIFPRTDAILHQR----LETIVRNAPFLRYVEAVRRDGARPQQEIEFE-D 135

Query: 533 TKEEKLLSLRIIIKK-LPFSSCYSL--TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
                 L +   +   L  S        +H+I+  K+ +                + +F+
Sbjct: 136 NSNATWLEVTGTVIPALHNSQPPCALFVLHNITRQKRLEAV--------------RKEFV 181

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDIS 648
           A VSHE+RTPL+ I G++E + +   GP   P   + + + I R  + +  ++ DLL +S
Sbjct: 182 ANVSHELRTPLSVIKGYAETLIDG--GPDMPPAQRDRFLHIIRRHTDRLNTLLEDLLTLS 239

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIA 708
           ++ES    L  EP  LD  V   +   +      R  ++ +       +  D   + Q+ 
Sbjct: 240 RLESPNTGLRREPGDLDRLVKTLLDEYRTRPAAARHTLQLTLGAAPGPLNFDALKLTQVF 299

Query: 709 LNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
            N+L NA+ +TP G +I I+       E+ + V D G G+   +L    + F ++   + 
Sbjct: 300 HNLLDNALKYTPPGSRIDIAIRPK-GSEIEICVSDNGPGIPVADLPHIFERFYRVDKGRS 358

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
               GTGLGL + K +V  + G+ ++ S P +G       P   
Sbjct: 359 RETGGTGLGLSIVKHIVQLHGGRVWVESEPGRGASFHFTLPAAP 402


>gi|146319012|ref|YP_001198724.1| Signal transduction histidine kinase [Streptococcus suis 05ZYH33]
 gi|146321222|ref|YP_001200933.1| Signal transduction histidine kinase [Streptococcus suis 98HAH33]
 gi|253752079|ref|YP_003025220.1| sensor histidine kinase [Streptococcus suis SC84]
 gi|253753904|ref|YP_003027045.1| sensor histidine kinase [Streptococcus suis P1/7]
 gi|253755221|ref|YP_003028361.1| sensor histidine kinase [Streptococcus suis BM407]
 gi|145689818|gb|ABP90324.1| Signal transduction histidine kinase [Streptococcus suis 05ZYH33]
 gi|145692028|gb|ABP92533.1| Signal transduction histidine kinase [Streptococcus suis 98HAH33]
 gi|251816368|emb|CAZ51999.1| sensor histidine kinase [Streptococcus suis SC84]
 gi|251817685|emb|CAZ55433.1| sensor histidine kinase [Streptococcus suis BM407]
 gi|251820150|emb|CAR46487.1| sensor histidine kinase [Streptococcus suis P1/7]
 gi|292558662|gb|ADE31663.1| Pas [Streptococcus suis GZ1]
 gi|319758446|gb|ADV70388.1| Signal transduction histidine kinase [Streptococcus suis JS14]
          Length = 449

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 93/447 (20%), Positives = 178/447 (39%), Gaps = 44/447 (9%)

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT----------FIPFEKANQFPENMPQ 430
            +   +       IA +  L    W+ +    +           +         PE    
Sbjct: 12  AEFWFVVILIGFLIALTVLLIENYWDNKQIKQLNQKVNALIEGNYADLLDMRGSPEITDM 71

Query: 431 NGIEPEDVDT-RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
                +  +  R+    +E E  +L SIL   SDG+   +R G I+  N    K  G   
Sbjct: 72  ANSLNDLSEVIRLTHDNLEQEKTRLTSILSYMSDGVIATDRIGRIIMINDMAQKQLGLSN 131

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
               +      L+ +    +   L +        T E +   + + E+ L+LR     + 
Sbjct: 132 PKQEQYHLLEVLDLSDRYTLRDLLAQ--------TPEIVIDHTNENEEFLTLRANFATIR 183

Query: 550 FSSCY----SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
             S       + +HD++E  +E+ +              +  F++ VSHE+RTPLT++  
Sbjct: 184 SESGLISGLVVVLHDMTEQAKEERE--------------RRLFVSNVSHELRTPLTSVKS 229

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
           + E +     G L       +        N ++ ++ DLL +S+I++    +  E ++  
Sbjct: 230 YLEAL---DEGALTESVAPSFVKVSLDETNRMMRMITDLLSLSRIDNQVGQIDVELINFT 286

Query: 666 EAVSEAISLVQLY--ANEKRI-LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
             V+  ++       A+  ++  I   +  +   +  D   + Q+  NIL+NAI ++P G
Sbjct: 287 AFVTFILNRFDQMKNADSDKVYTIVRDYQISPIWVEIDTDKMTQVLDNILNNAIKYSPDG 346

Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
           G I  S   T + ++I+ V D G+G+   +L +    F ++  ++     GTGLGL +AK
Sbjct: 347 GTITFSMKTTDS-QLIVSVSDEGLGIPKADLPRIFDRFYRVDKARSRAQGGTGLGLAIAK 405

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFP 809
            +V  + G  +  S    G+   I+ P
Sbjct: 406 EIVKQHKGFIWAKSEYGHGSTFTIVLP 432


>gi|109900048|ref|YP_663303.1| aerobic respiration control sensor protein ArcB [Pseudoalteromonas
           atlantica T6c]
 gi|109702329|gb|ABG42249.1| PAS/PAC sensor hybrid histidine kinase [Pseudoalteromonas atlantica
           T6c]
          Length = 781

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 101/394 (25%), Positives = 174/394 (44%), Gaps = 19/394 (4%)

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
              +E E  D    + +       L SI++A+ D I   N EG     NR   ++ G   
Sbjct: 136 FVELENEIKDRAEKEEQALRLSTLLRSIIDASPDLIYYRNEEGQFAGCNRVAEQMTGLTE 195

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
            +++        E+     +     E+L  D+  T E     +        +R +     
Sbjct: 196 AELIGLTPHEVWEEELARQVAASDQEVLENDVSITEEIWLRFADGRRGYFEMRKVPFYDK 255

Query: 550 FSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
            +          DI+E KQ +N       I  K S  K+ F+A +SHE+RTPL  I+G S
Sbjct: 256 DNKRLGLLAFGRDITERKQAEN-------IVAKASKDKTKFIATISHELRTPLNGIVGLS 308

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
            ++++ +     +     + + I  SG  + +I ND++DI ++   K+ L  + VS+ + 
Sbjct: 309 RMLRDTKL----DKEQFAWVSTIYASGITLGNIFNDIIDIDRMGRDKLELSLKTVSIKDF 364

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII 726
             E  S+++L A +K +   T     +P  +  D   ++QI  N+L NA+ FT  G ++ 
Sbjct: 365 TEELSSIIKLLAADKGLAFDTEIREPLPDFVEVDGTRLRQILWNLLFNAVKFTQKG-KVS 423

Query: 727 ISTTHTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
           +S    ++      V  RV DTGVG+   EL+K    + Q+   +     GTG+GL + +
Sbjct: 424 LSVEAQTSGDGISHVTFRVGDTGVGIPQTELDKIFAMYYQVNLPEHQSATGTGIGLAICQ 483

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
            MV    G+  + S   KGT   +  PL  ++ P
Sbjct: 484 QMVSLMNGEIKVSSEIGKGTCFSVELPLPISNRP 517



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/186 (12%), Positives = 54/186 (29%), Gaps = 14/186 (7%)

Query: 11  EDILTS-NCKGNTQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLD 69
           EDIL S   + N + L+       +E E+ K      ++       +    +      L 
Sbjct: 103 EDILLSRELQNNIKQLN-------YEIEQRKNAQEERENVFVELENEIKDRAEKEEQALR 155

Query: 70  SENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP 129
                            +  +  G     +    +  G    ++IG+   +V +      
Sbjct: 156 LSTLLRSIIDASPDLIYYR-NEEGQFAGCNRVAEQMTGLTEAELIGLTPHEVWEEELARQ 214

Query: 130 -NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNR 188
                 ++L+   +   +  L   +G       ++  +P Y ++ +  G   FG      
Sbjct: 215 VAASDQEVLENDVSITEEIWLRFADGR--RGYFEMRKVPFYDKDNKRLGLLAFG--RDIT 270

Query: 189 VDNDPR 194
                 
Sbjct: 271 ERKQAE 276


>gi|217077839|ref|YP_002335557.1| sensor histidine kinase [Thermosipho africanus TCF52B]
 gi|217037694|gb|ACJ76216.1| sensor histidine kinase [Thermosipho africanus TCF52B]
          Length = 465

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 79/367 (21%), Positives = 160/367 (43%), Gaps = 41/367 (11%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           +++     +  +L + ++GI ++N  G I   N    ++                   ++
Sbjct: 134 QIKKSEKFMSDVLNSINEGIFVLNENGRIEFLNDFAKEIL------------------DS 175

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
              +N +L   ++       E+  L         ++  +       + Y +T ++++   
Sbjct: 176 APHINEFLKSAIND------ERKILTKEFNNHYYTIVKVKFNFSNETKYVVTFNNVTYEI 229

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + +          ++    K++F+A +SHE+RTPLTAI  ++E + N     +      E
Sbjct: 230 ELEK--------LKQLDKMKTEFVANISHELRTPLTAIKAYTETLLNME---VDRESQRE 278

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           +   +      +  ++NDLLD + IESG M L +    L E + E +  ++  A + ++ 
Sbjct: 279 FLETVYEQSERLESLLNDLLDFTLIESGTMELEYSEFDLCELIKEVVENLKQLAEKYKVK 338

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ---IIISTTHTSNEEVILRVR 742
           I  S  +    I AD R +KQ   N++ N+I F+    +   + IS        + + + 
Sbjct: 339 INVSCES--ISISADKRRIKQAIHNLVDNSIKFSDKSKEERYVNISVEKKEEN-LSIIIE 395

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G+G++  + EK  + F +   S      GTGLGL + + ++  + GK  + ST  +GT
Sbjct: 396 DNGIGISQEDKEKIFEKFYRGDRSLTYEVPGTGLGLTIVQEIIKLHGGKINVNSTLGEGT 455

Query: 803 LIEIIFP 809
             E++ P
Sbjct: 456 TFELVIP 462


>gi|314935218|ref|ZP_07842571.1| sensory box histidine kinase VicK [Staphylococcus hominis subsp.
           hominis C80]
 gi|313656553|gb|EFS20292.1| sensory box histidine kinase VicK [Staphylococcus hominis subsp.
           hominis C80]
          Length = 608

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 79/388 (20%), Positives = 171/388 (44%), Gaps = 29/388 (7%)

Query: 426 ENMPQNGIEPEDVDTRINKRKM--EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           + + +  +   ++  R+ + +   E E  +L S++   SDGI   +R G I   N    K
Sbjct: 234 DEIGELALAFNNLSKRVQEAQANTESEKRRLDSVITHMSDGIIATDRRGRIRIVNDMAIK 293

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           + G   ED++       L+      +        S+ +    E+  +        ++   
Sbjct: 294 MLGMAKEDLIGYYMLNVLKIEGDFSLEEIQENNDSILIDMNEEEGIIAR------VNFST 347

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
           I++   F + Y   +HD++E +Q + +              + +F+A VSHE+RTPLT++
Sbjct: 348 IVQDTGFVNGYIAVLHDVTEQQQVERE--------------RREFVANVSHELRTPLTSM 393

Query: 604 IGFSEVIKNQRFGPLGNPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
             + E ++    G   +      + +        ++ +VNDLL +SK+++    +  E V
Sbjct: 394 NSYIEALEE---GAWKDENLAPSFLSVTREETERMIRLVNDLLQLSKMDNETEQITKEIV 450

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
             +  +++ I+  +     K         N       D   + Q+  N+++NA+ ++   
Sbjct: 451 DFNMFINKIIN--RHEMAAKDTTFVREIPNETIFTEIDPDKMTQVFDNVITNAMKYSRGD 508

Query: 723 GQIIISTTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
            ++       +    + +R++D G+G+   +++K    F ++  ++  +  GTGLGL ++
Sbjct: 509 KRVEFHVKQNALYNRMTIRIKDNGIGIPINKVDKIFDRFYRVDKARTRKMGGTGLGLAIS 568

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           K +V+A+ G+ +  S   +GT I I  P
Sbjct: 569 KEIVEAHNGRIWANSVEGQGTSIFITLP 596


>gi|304321087|ref|YP_003854730.1| sensory box histidine kinase/response regulator [Parvularcula
           bermudensis HTCC2503]
 gi|303299989|gb|ADM09588.1| sensory box histidine kinase/response regulator [Parvularcula
           bermudensis HTCC2503]
          Length = 662

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 108/627 (17%), Positives = 213/627 (33%), Gaps = 39/627 (6%)

Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255
              R +        I++    V     +  S             +           +   
Sbjct: 46  AEARAEDDVRRAFAIQRDIYQVHALLAEAASGVRGYLLTGQDRFLEPFRRAEGELPETYA 105

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
                +      +          +  +          +    +             +   
Sbjct: 106 RLDIAIEDPGVRA-AYDVFLDQADQKREGLDALLAQTRQAGNDRNGTAEILQMLIDNKTV 164

Query: 316 DEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
            +      + +              +      +L LT   ++  +  +     L     +
Sbjct: 165 LDDLRAQIDVIQALEGALLDERRERVERVRALYLSLTVISALIGLMGSLAAVYLFSTGIV 224

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
                ++                                  P        + + +   + 
Sbjct: 225 RRVQGLERNAERLERGE------------------------PMIAFPPASDEIGRLAEQL 260

Query: 436 EDVDT--RINKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDI 492
           +      R  ++ +     +   ++E   D GI  +  EG + S N    ++ G+  ++I
Sbjct: 261 DRASELLRAREQAVRDSEERFRLVVEGVQDYGIFALTPEGEVASWNTGAERIKGWQADEI 320

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS- 551
           L K F  F    T   +   +  +       T E       K+       +I+  L    
Sbjct: 321 LGKHFARFYPSETRGYLPTQM--LERARDHGTAEDEGWRVRKDGSRFWANVIVTALRDEA 378

Query: 552 ---SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                ++    DI+E KQ +  L  A++ A   S  KS+FL+R SHE+RTP++AIIGF++
Sbjct: 379 GELRGFAKVTRDITERKQSEEALKAAREAAVLASQAKSEFLSRTSHELRTPMSAIIGFAQ 438

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
           V++         PR+      I ++   +L ++NDLLD+S IE+G   L  E VSL + +
Sbjct: 439 VLELDHDDLA--PRHQTATTQILKAARHLLSLINDLLDVSSIEAGTQALKLEEVSLLDVL 496

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
            EA SL         +  +    +    +  D R   Q+ LN+L+NA  +   G  + ++
Sbjct: 497 EEAYSLAAPIVKAANLSFQFDQESAQYTVQCDRRRTIQVVLNLLTNAAKYNREGAYVALT 556

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                  +V++ V D G G+ +  + +   PF ++   +Q R +G+GLGL L+K++V+  
Sbjct: 557 VQP-DGNDVVVSVTDDGAGIPDERIPRLFTPFDRLGQEKQRRTDGSGLGLALSKSLVETM 615

Query: 789 MGKFYIFST--PAKGTLIEIIFPLYDT 813
            G+    +   P +G       P+   
Sbjct: 616 GGRIGFRNATPPDRGASFWFTLPISRA 642



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/428 (8%), Positives = 96/428 (22%), Gaps = 27/428 (6%)

Query: 37  EKSKKENPCHDS---FEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHG 93
           E      P  D      +                 DSE  F            + +   G
Sbjct: 241 EPMIAFPPASDEIGRLAEQLDRASELLRAREQAVRDSEERFRLVVEGVQDYGIFALTPEG 300

Query: 94  YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIE 153
            +   +    +  G  A +++G                    L + ++    +   W + 
Sbjct: 301 EVASWNTGAERIKGWQADEILGKHFARF-YPSETRGYLPTQMLERARDHGTAEDEGWRVR 359

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
                   ++    +     E  GF    +              K   +      + K  
Sbjct: 360 KDGSRFWANVIVTALRDEAGELRGFAK--VTRDITERKQSEEALKAAREAAVLASQAKSE 417

Query: 214 HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL---P 270
             S    +              ++     L   +      +      LL+     L    
Sbjct: 418 FLSRTSHELRTPMSAIIGFAQVLELDHDDLAPRHQTATTQILKAARHLLSLINDLLDVSS 477

Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD----EGENLTPETV 326
            +     + L + +         + +    +  +        +       +        +
Sbjct: 478 IEAGTQALKLEEVSLLDVLEEAYSLAAPIVKAANLSFQFDQESAQYTVQCDRRRTIQVVL 537

Query: 327 DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDI-----EIAGGLSTLLDAPKLSDNNAI 381
           +           G       +++ LT     +D+     +   G+         +  + +
Sbjct: 538 NLLTNAAKYNREG-------AYVALTVQPDGNDVVVSVTDDGAGIPDERIPRLFTPFDRL 590

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN--QFPENMPQNGIEPEDVD 439
                 R+D + +  +     ++            P ++     F   + + G  PE  D
Sbjct: 591 GQEKQRRTDGSGLGLALSKSLVETMGGRIGFRNATPPDRGASFWFTLPISRAGRGPEITD 650

Query: 440 TRINKRKM 447
               +   
Sbjct: 651 PETREEAA 658


>gi|119715628|ref|YP_922593.1| PAS sensor protein [Nocardioides sp. JS614]
 gi|119536289|gb|ABL80906.1| PAS sensor protein [Nocardioides sp. JS614]
          Length = 977

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 110/647 (17%), Positives = 230/647 (35%), Gaps = 30/647 (4%)

Query: 180 GFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK 239
             G++        P  L        S   ++ +   +            +    +     
Sbjct: 53  WVGVLRHPAGRGVP--LLVATAVSVSVTGDVLERCVAGWAGLGVGEWSAAVAYFIGYLFL 110

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
            ++L +         +  +   L    + +                +    ++   + + 
Sbjct: 111 GAALLQVLTPPGSRRRLVRVDALLEAATIVTVAVLLVWTASTTAAFEATGLSVAEGALQV 170

Query: 300 FEYLS--------HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLL 351
              ++         R           G  LT  T         + + G     +  +LL 
Sbjct: 171 STPVADLTLLAFAARAVVVRRGRSATGWLLTGATGTWLLTSLAIVAGGAPDRLDTGWLLG 230

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411
               +   +      +++    + +        ML       +   A L  +  + + +L
Sbjct: 231 MLLLAAAALPRDAAAASMARVGRPAVRRRHTARMLLAILPAAVPPVAHL--VTHHDQRAL 288

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471
            + ++           +    +            ++      L ++ + + D I +++  
Sbjct: 289 YVPYLGM----GVLLLITLLRVGRLLASEDAAHAELARSHEYLQALADNSVDAILVVDER 344

Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
             I+ ++  V +  G      L   +           +   L   ++       E+  L 
Sbjct: 345 LDIVFSSSGVQEYLGPSPRRGLPA-WAEAAGLRLHDGLEDALARTVAAPDAIVQEEFLLV 403

Query: 532 STKE--EKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
              E    +L+  + +   P      +++ D +E K+ + +L  A+  A   S  KS FL
Sbjct: 404 PEHEKPRWILARFVNLLHDPAVRGIVISLSDSTERKEMELELGRARDAALAGSRAKSTFL 463

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
           A +SHEIRTPL  ++G +E++   R     + +   YA  I  +G  +L ++ND+LD SK
Sbjct: 464 ATMSHEIRTPLNGVLGLTELMLTTRL----DGQQGRYAEGIRVAGEALLQVINDILDFSK 519

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIA 708
           IE+G++ L    + +   + E   +V   A EK + +    +  +P  +  D   ++Q+ 
Sbjct: 520 IEAGRLELEEVDLDVARLLDETARMVAGPAQEKGLALVVRCSPEVPPGLRGDAVRLRQVL 579

Query: 709 LNILSNAIHFTPSGGQIIISTTHT-----SNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
           LN+ SNAI FT +G ++++S             V   V DTG+G+   + E     F Q 
Sbjct: 580 LNLTSNAIKFTRTG-EVVLSAQLERAPVADVASVRFEVADTGIGIDPAQREHLFDAFTQA 638

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            ++   R  GTGLGL +++ +V A  G   +      G+   ++ PL
Sbjct: 639 DSTTTRRFGGTGLGLAISRQLVTAMGGAIGVEPRSGPGSRFWVVVPL 685


>gi|299821889|ref|ZP_07053777.1| phosphate regulon sensor histidine kinase protein PhoR [Listeria
           grayi DSM 20601]
 gi|299817554|gb|EFI84790.1| phosphate regulon sensor histidine kinase protein PhoR [Listeria
           grayi DSM 20601]
          Length = 591

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 80/394 (20%), Positives = 168/394 (42%), Gaps = 22/394 (5%)

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
                            +           + ++    +L ++L+    G+ +IN + +++
Sbjct: 217 SRIRGRASGELQDLAISVNALAESLESQMQAIKQNEQRLTAVLQNLVSGVMLINNDKMVI 276

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
            TN+ + +L   P   I  K +   ++      +   +   +     Q  E       + 
Sbjct: 277 MTNKMMYELLDTPS--IAGKYYYEVIKSF---ALTQLVEAAIQTKSLQREEITLYFPKEM 331

Query: 536 EKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
               ++  I+      +   L +HDI++ K  +N               +++F+  VSHE
Sbjct: 332 TLDANVSPILTDQGEITGLILLLHDITQIKHLENV--------------RTEFVTNVSHE 377

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           ++TP+TA+ GF+E + +            ++   +    + +  ++ D+L +S+IE   +
Sbjct: 378 LKTPVTALKGFAETLLDGAM--YDEALLKKFLGIMKDESDRLHRLILDILALSRIEQHAL 435

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715
            ++ E V + + ++EA   V   A +K I +    A     I  D   +KQI +N++SNA
Sbjct: 436 PINQEVVDIYQTITEAAQTVTESAKQKNIDLVLPHAAKPLPIETDNDKLKQIIINLVSNA 495

Query: 716 IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           + +TP  G + +    + + EV+  V D G+G+   E+E+  + F ++  ++     GTG
Sbjct: 496 VAYTPENGTVKVDVEESPH-EVLFTVADNGIGIPAKEIERVFERFYRVDKARSRYSGGTG 554

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           LGL + K + +   G+  + S   +GT   I  P
Sbjct: 555 LGLSIVKHLTEQLGGRIEVASVEGEGTTFSIHLP 588


>gi|239617406|ref|YP_002940728.1| histidine kinase [Kosmotoga olearia TBF 19.5.1]
 gi|239506237|gb|ACR79724.1| histidine kinase [Kosmotoga olearia TBF 19.5.1]
          Length = 538

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 84/277 (30%), Positives = 141/277 (50%), Gaps = 3/277 (1%)

Query: 539 LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
           L + III     +         ++  ++    +       ++    KS+FLA +SHE+RT
Sbjct: 254 LLISIIIAATFLTVILLTYFAILTNARKMIKTMEQDNIKIKELERLKSEFLATMSHELRT 313

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
           PL +IIGF  +I     G + N    +  + +  S   +L+++ND+LDISKIE+GKM+  
Sbjct: 314 PLNSIIGFVSMILQGISGDI-NEEQRKQLSMVHSSSIHLLNLINDILDISKIEAGKMSFS 372

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718
            +  ++ + +SE +  V    ++K + + T   + IP + +D   V QI LN++SNAI F
Sbjct: 373 KDRFNIKDVISEVVQNVSPLISKKEVKLITEIPDEIPEVYSDKTRVFQILLNLVSNAIKF 432

Query: 719 TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
           T  G +I I       +++ + V DTG G+   ++E   + F QI  S + R +G GLGL
Sbjct: 433 TEKG-EIRIKCEV-DGDKLKISVSDTGKGIKEEDMETLFEAFRQISGSARRRYQGAGLGL 490

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            L+K +V    G+ ++ S   KG+      PL     
Sbjct: 491 YLSKKLVTLLGGEIWVESEYGKGSTFTFTLPLKSVEE 527


>gi|193215934|ref|YP_001997133.1| PAS/PAC sensor hybrid histidine kinase [Chloroherpeton thalassium
            ATCC 35110]
 gi|193089411|gb|ACF14686.1| PAS/PAC sensor hybrid histidine kinase [Chloroherpeton thalassium
            ATCC 35110]
          Length = 1215

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 103/761 (13%), Positives = 223/761 (29%), Gaps = 70/761 (9%)

Query: 85   FTWNIDAHGYLKEISEELPKTIGNYAFKMIG--MRLCDVSDILHI-DPNNHIGDLLKRQ- 140
            FTWN+   G ++  SE L   +     + I       ++     +      + D +    
Sbjct: 342  FTWNV-TTGKIR-WSESLFDILQYDKSEAIDYAKVNAEIHHPQDLPRVTRWLNDAIASGK 399

Query: 141  NTWY-GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199
            NT    +  L   +G  +Y  +    + +   N      + F          +       
Sbjct: 400  NTLSPNEYRLIRKDGHIIY--VRATGVIVRDENNSV---KVFATAQDITEQKEAERERAA 454

Query: 200  LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
            L     +  +I        +      +         +   +        +  +     + 
Sbjct: 455  LASFVQNSQDIIVVKDLNRRVVATNMAFTLAADRKSISEMLGKTDAEIFNIPEDADPIRA 514

Query: 260  PLLT-------SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
             +L             L  +E          T       +++++          N  +  
Sbjct: 515  YMLDDLKAMNLPAGEMLVREEPVIFPGGEVRTFLTRKFPIRDDAGNPIYVGIISNDITER 574

Query: 313  AYFD----EGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLS 367
               +    E E    +  +         S G  +  AN ++  +  Y   + I       
Sbjct: 575  KEANRLLIESEARFRQIYENISAGIAAVSLGFRIISANQAYCQMLGYSEQELIGKHLSE- 633

Query: 368  TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
                 P+  + N  +   L                I  + +    +        N   E 
Sbjct: 634  --FTHPESLEENINQQTRLAA--GEIDHFRMEKQFIHKSGKLLYGILDSNLI-RNLSGEP 688

Query: 428  MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI--INREG-IILSTNRAVSKL 484
            +   G   +  + +  + ++     +  S+ E  +D   +  I+ E    +  N    K 
Sbjct: 689  IYFLGSVVDITEKKAAEEEIRASEAKYKSLFEGINDAAFVHPIDEERKNFIEVNETACKY 748

Query: 485  FGYPVEDILRKPFTVFLEQNTPSVMN----HYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
              Y  E++L+            +         +  IL  + +   E      + +   + 
Sbjct: 749  LEYTREELLKLSPKDLTPTTDVTGAQFRGTREIRAILLKEKQIVFEIELETKSGKRIPVE 808

Query: 541  LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
            +   +  +           DI+E K+ + +L   +K+              ++H+    L
Sbjct: 809  ISTRVFHMGGVPFALSLARDITERKRTEQELHRMEKL-----ESIGTLAGGIAHDFNNLL 863

Query: 601  TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
              I G    +               Y +  +++ N    +   LL  SK   G   L  E
Sbjct: 864  MGIFGKI-SLAKTALDKTHPA--ARYLDGAEQAMNRATRLTKQLLTFSK---GGAPL-KE 916

Query: 661  PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720
             V++ E V E     +   +   +    +   N+     D   ++Q   N++ NA    P
Sbjct: 917  HVNIFELVEEIT---RFDLSGSNVKALFNQPQNLWLADVDKGQIQQAFSNLIINASQAMP 973

Query: 721  SGGQIIISTTHTS------------NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
             GG + I+  +               + V + V+D GVG+    ++    P+     S  
Sbjct: 974  RGGHLYITFENRDVTNANKEPNLEAGKYVKITVQDEGVGIDKKNIDYIFDPYFTTKQS-- 1031

Query: 769  IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
                G+GLGL    +++  + G  ++ S    GT + +  P
Sbjct: 1032 ----GSGLGLTTTYSIIKKHGGTIHVESELGVGTSVTLFLP 1068



 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 77/622 (12%), Positives = 168/622 (27%), Gaps = 55/622 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID----PNNHIGDLLKRQNTW- 143
            D +G +  I+       G    ++ G  L     I H        + +  +L+      
Sbjct: 213 TDLNGNIVRINRVAESLTGYRYEEVKGKPLTSCFSIFHAKTGKLAEDPVQKVLEIGEIVA 272

Query: 144 -YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
               T L   +G      I  +A PI   + + +G     +      +   R   K  +K
Sbjct: 273 LSNDTVLISKQGKKYQ--IADSAAPIKGSDGKTTGV--VLVFRDVSEEYKMRQKLKENEK 328

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS-------LTEYYAHKDDVLK 255
           +      I K                     +   +K  +          ++      + 
Sbjct: 329 RLKQAQRIAKIGDFTWNVTTGKIRWSESLFDILQYDKSEAIDYAKVNAEIHHPQDLPRVT 388

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
                 + S +++L   E             +  G +  +   S +  +     +     
Sbjct: 389 RWLNDAIASGKNTLSPNEYRLIRKDGHIIYVRATGVIVRDENNSVKVFATAQDITEQKEA 448

Query: 316 DEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
           +         V        V      +   N +F L    KS+ ++              
Sbjct: 449 ERERAALASFVQNSQDIIVVKDLNRRVVATNMAFTLAADRKSISEMLGKTDAEIFNIPED 508

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
                A     L   +        R   + +            F   +     +    I 
Sbjct: 509 ADPIRAYMLDDLKAMNLPAGEMLVREEPVIFPGGEVRTFLTRKFPIRDDAGNPIYVGIIS 568

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
            +  + +   R +     +   I E  S GIA ++    I+S N+A  ++ GY  ++++ 
Sbjct: 569 NDITERKEANRLLIESEARFRQIYENISAGIAAVSLGFRIISANQAYCQMLGYSEQELIG 628

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS--LRIIIKKLPFSS 552
           K  + F    +     +  T + + ++            K  KLL   L   + +     
Sbjct: 629 KHLSEFTHPESLEENINQQTRLAAGEIDH-FRMEKQFIHKSGKLLYGILDSNLIRNLSGE 687

Query: 553 C--YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
              +  ++ DI+E K  + ++        + S  K                      E I
Sbjct: 688 PIYFLGSVVDITEKKAAEEEI--------RASEAKY-----------------KSLFEGI 722

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD-EAVS 669
            +  F    +     +    + +   +     +LL +S       +L      +      
Sbjct: 723 NDAAFVHPIDEERKNFIEVNETACKYLEYTREELLKLS-----PKDLTPT-TDVTGAQFR 776

Query: 670 EAISLVQLYANEKRILIRTSFA 691
               +  +   EK+I+      
Sbjct: 777 GTREIRAILLKEKQIVFEIELE 798



 Score = 86.2 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 57/155 (36%), Gaps = 7/155 (4%)

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
            ++  R  K+ ++     L + L +  D +   +  G I+  NR    L GY  E++  K
Sbjct: 181 AELREREAKKLIQQNEENLLTTLNSIGDAVISTDLNGNIVRINRVAESLTGYRYEEVKGK 240

Query: 496 PFTVFLEQNTP---SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
           P T            +    + ++L +     L   T+  +K+ K   +      +  S 
Sbjct: 241 PLTSCFSIFHAKTGKLAEDPVQKVLEIGEIVALSNDTVLISKQGKKYQIADSAAPIKGSD 300

Query: 553 ----CYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
                  L   D+SE  + + KL   +K  ++   
Sbjct: 301 GKTTGVVLVFRDVSEEYKMRQKLKENEKRLKQAQR 335


>gi|307706667|ref|ZP_07643473.1| two-component sensor histidine kinase [Streptococcus mitis SK321]
 gi|307617911|gb|EFN97072.1| two-component sensor histidine kinase [Streptococcus mitis SK321]
          Length = 449

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 90/376 (23%), Positives = 168/376 (44%), Gaps = 33/376 (8%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           R+ +  +E E  +L SIL   +DG+   NR G I   N    K  G   E++L K     
Sbjct: 83  RLTQENLEQESKRLNSILSYMTDGVLATNRRGKITMINDMAKKQLGVQKEEVLNKSILEL 142

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SL 556
           L+      +   +T++         E +        + LSLR+    +   S +      
Sbjct: 143 LQIEDEYELRDLITQVP--------ELMIDSQDDNGEYLSLRVRFALVRRESGFISGLVA 194

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            +HD +E ++E+ +                 F++ VSHE+RTPLT++  + E +     G
Sbjct: 195 VLHDTTEQEKEERERRL--------------FVSNVSHELRTPLTSVKSYLEAL---DEG 237

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV- 675
            L  P   ++        N ++ +V DLL +S+I++   +L  E ++    ++  ++   
Sbjct: 238 ALSEPVAPDFIKVSLDETNRMMRMVTDLLHLSRIDNATSHLDVELINFTAFITFILNRFD 297

Query: 676 --QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
             +    EK+  +   +      I  D   + Q+  NIL+NAI ++P GG+I ++   T 
Sbjct: 298 KMRGSDEEKKYELVRDYPITSVWIEIDTDKMTQVIDNILNNAIKYSPDGGKITVTMKTTD 357

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
           ++ + L + D G+G+   +L +    F ++  ++     GTGLGL +AK ++  + G  +
Sbjct: 358 DQMI-LSISDQGLGIPKQDLPRIFDRFYRVDRARSRAQGGTGLGLSIAKEIIKQHNGFIW 416

Query: 794 IFSTPAKGTLIEIIFP 809
             S   KG+   I+ P
Sbjct: 417 AKSIYGKGSTFTIVLP 432


>gi|283853366|ref|ZP_06370613.1| Hpt sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283571234|gb|EFC19247.1| Hpt sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 963

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 118/648 (18%), Positives = 209/648 (32%), Gaps = 38/648 (5%)

Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS 242
           I+     D +  A  +      +      +  + +  +  ++ + +     L     V  
Sbjct: 28  ILTYYMADREAAAQNRTRVLLAALAAHRLEALAPLLHQSAELEAARDILGRLVRVEGVVE 87

Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302
            + +      V     +P                             G     S    E 
Sbjct: 88  ASLFDGRGTLVSSAGLFPPPPLRADPGEALPAGR--------VYAVQGEAGKLSAILVEP 139

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYAN---PSFLLLTKYKSVDD 359
           +  +                        + F V   G   +        L     K VD 
Sbjct: 140 IRGQGETLGFLRLRYAMRDLSALNRHVWLVFAVAVAGAYLFLATLLNILLHRFVLKPVDV 199

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ--WNRENSLAMTFIP 417
           +    GL  +             P  L R  +   A SARL           +       
Sbjct: 200 LRQ--GLEAVEAGRLGHAVPVSSPDALGRMAQAFNAMSARLQETSQSLAASRAEIEENRR 257

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ----LCSILEATSDGI--AIINRE 471
                                     +R+ E    +      +ILE+T++ +    +  +
Sbjct: 258 LLAGRVEERTAALARANGRLTAEVEARREAEARQERALALYKAILESTAEAVMCVGVGPQ 317

Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
             +L+ NR   +L+G P +                        +     +R      T  
Sbjct: 318 RDVLAVNRRFLELWGLPDDWPSLDHIARGQAIRDRLREPEAAEQAFRDLMRDDTRLDTSC 377

Query: 532 ST-KEEKLL-SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
               + + L      I +        L+  D++  K+ +     AK  AE  S  K DFL
Sbjct: 378 LELGDGRFLERRSGPIIQGEAYIGRVLSYIDVTADKEREASTERAKNRAEDASKAKGDFL 437

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
           A +SHEIRTPL  +IG +E +  +      +   + +   +  S   +L +VND+LD SK
Sbjct: 438 AVMSHEIRTPLNVVIGLTEEMLARP----ASEEQLGHLRTVRESAAHLLGVVNDILDFSK 493

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIA 708
           IE+GK+ L      +   V+         A  K +      A+ +P  +  D   ++Q+ 
Sbjct: 494 IEAGKLVLERLDFDVRRLVAGVAEAFDREARRKGLRFEARVADGLPGTLCGDPGRLRQVF 553

Query: 709 LNILSNAIHFTPSGGQIIISTTHTSNE---------EVILRVRDTGVGMTNYELEKAMKP 759
           LN++ NA+ FT +G  + +S                 + + V DTG+G+    L +    
Sbjct: 554 LNLVGNAVKFTEAGS-VSLSVGPAQAAPGAVPDGRIGIEVCVADTGIGIEPDRLPEIFDH 612

Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           F Q   S   R  GTGLGL ++K +V+   G+  + S P +G++    
Sbjct: 613 FQQGGGSIGRRFGGTGLGLAISKGIVERMGGRITVESRPGEGSVFRFT 660


>gi|182677583|ref|YP_001831729.1| histidine kinase [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182633466|gb|ACB94240.1| histidine kinase [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 903

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 122/701 (17%), Positives = 251/701 (35%), Gaps = 38/701 (5%)

Query: 131 NHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREF-SGFRGFGIVHVNRV 189
             +    +       + T    +   +   +D    P + R+      +     V     
Sbjct: 212 RDVSAARRDLLQLREEQTQILADLAAVRTLLDAVPHPAWQRDGAGHLSWVNLAYVRAIEA 271

Query: 190 DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH 249
            +   A+ + ++       +      +     +   +        RM + +       A+
Sbjct: 272 RDRQDAVVRGVELLEHPTRDASDATRA-TGHIWQARAAAVVAGARRMLDIIEMPVPVAAN 330

Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
               +   +  L  S  S     +   T++     ++                       
Sbjct: 331 DMGQIHGRRAALHASNGSQGITNQ--GTLDQATIGQEAIDPGTIGKGAVGMASDVSELEA 388

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
             S    + E     T+D+      ++     L + N ++  L              L  
Sbjct: 389 MRSVNVQQAEAHAR-TLDQLTTAVAIFDRTKRLVFHNTAYRQLW------------ALDQ 435

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASA---RLHTIQWNRENSLAMTFIPFEKANQFP 425
                  +D   +  + +       +   +    L +     E    + ++P  +  +  
Sbjct: 436 AWLDQGPTDAEILDRLRMAHLLPEQVDFRSWKQDLFSAYQALETREQLWYLPDGRTLRSV 495

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVM---QLCS-ILEATSDGIAIINREGIILSTNRAV 481
                 G      D    +  +E       ++ S  L+   +G+A+   +G +   N A 
Sbjct: 496 ITPNPQGGVTYLFDDTTERFHLESRFNAAIRVQSETLDTLQEGVAVFGSDGRLKLFNPAF 555

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHY-----LTEILSLDLRQTLEKITLGSTKEE 536
           + L+    E +  +P    +      ++        L  +++  L + L      + ++ 
Sbjct: 556 AALWKLEPEALGGEPHIDKVASLCAPLLVEQTAWDNLRTVVAGLLDERLGLENRLTRQDG 615

Query: 537 KLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
            +L                +T  D++     +  L+   +        ++DF+  VS+E+
Sbjct: 616 SVLDYAAAPLP---DGATLITFIDMTASVNVERALTERNQALLDAEKLRNDFVHHVSYEL 672

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           R+PLT IIGF E++     GPL N +  EY  Y+  S + +  I+ND+LD++ I++  M+
Sbjct: 673 RSPLTNIIGFIEMLGEGAVGPL-NEKQHEYIGYVMASSSALRAIINDILDLASIDADAMD 731

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716
           L  E V + EA+  A   V+    E  + +    A +I   LAD + ++QI  N+LSNAI
Sbjct: 732 LSLEEVDIAEAMRAAAEGVRDRLRESTLTLAVDAAPDIGVFLADGKRIRQILFNLLSNAI 791

Query: 717 HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
            F+  G  + ++ + + + EVI +V D G G+ +  +E     F    ++      G GL
Sbjct: 792 GFSTPGQTVTLAASRSHD-EVIFKVIDEGCGIPDDMVEHVFDRFKT--HAGGSNHRGVGL 848

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP-LYDTSHP 816
           GL + ++ V  + G+  I +   KGT +  IFP   + S P
Sbjct: 849 GLSIVRSFVQLHGGRVLIETKLGKGTTMTCIFPSRGEASDP 889


>gi|170695068|ref|ZP_02886216.1| multi-sensor hybrid histidine kinase [Burkholderia graminis C4D1M]
 gi|170139920|gb|EDT08100.1| multi-sensor hybrid histidine kinase [Burkholderia graminis C4D1M]
          Length = 933

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 113/681 (16%), Positives = 229/681 (33%), Gaps = 39/681 (5%)

Query: 161 IDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL--------DKKFSHLHEIKK 212
           + + A  +YS        R      + R ++      + L          +   +  +++
Sbjct: 25  VAVGATTLYSLAGSAHAIRQLAEERLARQEDAQDLAQQTLIIERLALQLSRDDTVDAVRE 84

Query: 213 GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ 272
            H  V ++                 + +              +          E++L   
Sbjct: 85  THRRVLEQLVSFDRAVDRLASATTSDNLGVDALTLHRSSQRFRNTVNIEAQLRETALGAD 144

Query: 273 EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH---PSLSAYFDEGENLTPETVDKC 329
                +     +       L+  +         ++               +    T    
Sbjct: 145 TMSQAVPRPGASLASLDDDLRRQADALAAAARDQSDYFTRDYRKAVQGLADDVNRTRMWV 204

Query: 330 PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389
                V        A  +FL       +  +        +         +    +     
Sbjct: 205 AGEVAVSLLLTWLIA-HAFLGRHVVARLRRVSHFLRHGDVGGVQVGVPVHGGDEIADMAR 263

Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449
                    R      +    L               +    G   E V+ +  ++    
Sbjct: 264 AVEQFLKDRRQRRQAEDALKELNAGLEARVAERTAELSAALAGQTAEIVERQRAEQVARA 323

Query: 450 EVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
               L SI+E   D I + +      +  N+A  +L GY  E I+ K             
Sbjct: 324 SEHFLDSIVENIPDTIFVKDAATLRFVRINKAGEQLLGYGREQIIGKSVHDMFPAQEAEF 383

Query: 509 MNHYLTEIL-SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS-LTMHDISEWKQ 566
                 ++L S  +    E+       +  L +++I I        +      DI+  ++
Sbjct: 384 FALKDRDVLKSHQMVDVPEEPVETIHGQRLLHTMKIPIVDERGEPQFLLGISRDITGQRR 443

Query: 567 EKNKLSHAKK------------------IAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
            + +L   ++                   A+  +  K  FLA +SHE+RTPL  I+G+++
Sbjct: 444 AEEELRRYREHLEDMIRERTAELAVAKERADAANQAKGAFLAHMSHELRTPLNGILGYAQ 503

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
           ++   +     + R+++    I RSG  +L I+ND+LD++K+E+GK  L    V L+  +
Sbjct: 504 IL---KCDKNLDRRHVDGITVIQRSGEHLLAIINDILDMAKMEAGKAELTLSDVPLEGFI 560

Query: 669 SEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIII 727
                 +++ A EK +      A N+P  +  D + ++Q+ LN+LSNAI FT +G  + +
Sbjct: 561 YFIAETIRVKAMEKGLAFACELAPNLPAAVRVDEKRLRQVLLNLLSNAIKFTETGS-VRL 619

Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
                    +   VRDTG+G+    L    +PF Q+ +++  +  GTGLGL +++ ++  
Sbjct: 620 RVGWMPPARLSFEVRDTGIGIHEARLGAIFRPFEQVSDAR-HQIGGTGLGLTISRQLLRL 678

Query: 788 NMGKFYIFSTPAKGTLIEIIF 808
             G+  + S    G+      
Sbjct: 679 MGGEIRVDSRHGAGSAFSFEL 699



 Score = 46.2 bits (108), Expect = 0.026,   Method: Composition-based stats.
 Identities = 32/257 (12%), Positives = 65/257 (25%), Gaps = 17/257 (6%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150
           A      I++   + +G    ++IG  + D+              L  R      +    
Sbjct: 345 ATLRFVRINKAGEQLLGYGREQIIGKSVHDMFPA----QEAEFFALKDRDVLKSHQMVDV 400

Query: 151 PIEG----TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
           P E         +   +  +PI     E     G  I              +R  +    
Sbjct: 401 PEEPVETIHGQRLLHTMK-IPIVDERGEPQFLLG--ISRDITGQRRAEEELRRYREHLED 457

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK------TEKYP 260
           +   +    +V KE+ D  +Q        M +++ +          +LK           
Sbjct: 458 MIRERTAELAVAKERADAANQAKGAFLAHMSHELRTPLNGILGYAQILKCDKNLDRRHVD 517

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
            +T  + S           L+    +     L  +      ++            ++G  
Sbjct: 518 GITVIQRSGEHLLAIINDILDMAKMEAGKAELTLSDVPLEGFIYFIAETIRVKAMEKGLA 577

Query: 321 LTPETVDKCPIPFFVYS 337
              E     P    V  
Sbjct: 578 FACELAPNLPAAVRVDE 594


>gi|237723244|ref|ZP_04553725.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
 gi|229447766|gb|EEO53557.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
          Length = 621

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 117/519 (22%), Positives = 205/519 (39%), Gaps = 40/519 (7%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
            S        E +        P+   +Y   G +   N   + + +  + +DI       
Sbjct: 125 ASAHQALQNSERILHNIYKNLPVGIELYDKDGQMVDLNKKDMEMFRISNKEDILGVN--- 181

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI-----QWNRENSLAMTFIPFEKAN 422
            + + P L +    K      +D            I       +    + +T       +
Sbjct: 182 -IFENPILPEEIKQKIKDNENAD---FTFRYDFSKINKYYQPNSTTGFIDLTTKVTTLYD 237

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN---REGI-ILSTN 478
              E +    I  +  +  I   K++        + +    G A  +   R+G  + S  
Sbjct: 238 HNHEPINYLLINVDKTEDTIAYNKIQEFESFFDLVGDYAKVGYAHFDALSRDGYALRSWY 297

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
           R V +  G P+ +I+             +VM  +L +++       L +       +   
Sbjct: 298 RNVGEEEGTPLPEIIG--IHSHFHPEDRAVMIDFLDKVIK-GESSKLSRDVRIRRADGNY 354

Query: 539 LSLRIIIKKL-----PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
              R+ +                   DI+E K+ +  L  AK+ AE+    KS FLA +S
Sbjct: 355 TWTRVNVLVRNYQLQDNIIEMLCINFDITELKETERMLIGAKEKAEEADRLKSAFLANMS 414

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HEIRTPL AI+GFS    +             YA  I+ +  L+L +++D+LD+SKIE+G
Sbjct: 415 HEIRTPLNAIVGFS----SLLEEAEDAEEKHLYATIIEENNKLLLQLISDILDLSKIEAG 470

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI--LADLRSVKQIALNI 711
             ++  E V   +  +E +  +Q+ A E+   +    A  +P +   +D   + Q+ LN 
Sbjct: 471 TFDIIPEQVDAQQLCNELLQSMQVRATEQ---VEILLAPELPELTFTSDKNRLYQVLLNF 527

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           ++NA+ FT  G  I+I        EV   V+DTG+G+   + E     F ++ N      
Sbjct: 528 VTNALKFTSEGS-IVIDYRIN-GNEVRFSVQDTGMGIEPEKQEAIFTRFVKLNNFIA--- 582

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            GTGLGLP+ +++V    GK  + S P KG+      P+
Sbjct: 583 -GTGLGLPICQSIVTQLGGKIGVESEPGKGSCFWFTHPI 620


>gi|260684073|ref|YP_003215358.1| putative sensor histidine kinase [Clostridium difficile CD196]
 gi|260687732|ref|YP_003218866.1| putative sensor histidine kinase [Clostridium difficile R20291]
 gi|260210236|emb|CBA64481.1| putative sensor histidine kinase [Clostridium difficile CD196]
 gi|260213749|emb|CBE05667.1| putative sensor histidine kinase [Clostridium difficile R20291]
          Length = 895

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 96/515 (18%), Positives = 183/515 (35%), Gaps = 40/515 (7%)

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
                  E    + + ++       V    N  Y N +   + K            +   
Sbjct: 391 EYERKLIEANKRSKDFLESIGDGIVVLEGNNKIYVNNACREIFK-------NNLESIDFS 443

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
           L             +     D                  N   +                
Sbjct: 444 LVCKSEESIEKRYVI-----DGEVKYVEMSFSQYTNAGTNKTIIVIR------------- 485

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
                 +    +I++ K+E         ++   DGI ++  +  I   N++   +  +  
Sbjct: 486 ------DTTSRKISQIKLEESQSSYSRFIDILPDGICLLKEDLSINYANKSFLDMLAFTN 539

Query: 490 -EDILRKPFTVFLEQNTPSVM---NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
            +DI      + +  NT   M   ++    +        LE   + S  +   + L  + 
Sbjct: 540 IDDIKDSNIKLLMNANTEEKMKFTDNMAKVLNENRSILLLEYELINSYDDIVEVELSALP 599

Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
             +  +    L + D+   K  +           K    K++F A +SHE++TPL  I  
Sbjct: 600 FAIYNTRYIMLIIKDLVHKKYSEQA-EKELLERFKTDKIKTEFFANMSHELKTPLNVISS 658

Query: 606 ---FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
                +           N     + + + +S   +  ++N+++D++K+ESG   L     
Sbjct: 659 SNQLVDSFYRNEKIKDYNNNIKSHVDLVRQSSYRLQRLINNIIDLTKMESGFYTLKLAKY 718

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
           ++   + +    ++ YA  K I I          +  D   +++I LN+LSN I FT +G
Sbjct: 719 NIVSVIEDLFMNIEEYALRKDIKILFDTDLEEINVYIDKVEIERIMLNLLSNCIKFTDNG 778

Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
           G I +S  +  + +VI+ V+DTGVG+   +LE   + F Q+  +     EG+G+GL + K
Sbjct: 779 GWIYVSIHYKID-KVIISVKDTGVGIPQDKLELIFEEFSQVDKTLSRNTEGSGIGLAIVK 837

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
            +V  + G   + S   KGT   I  P+   S  H
Sbjct: 838 NLVSLHGGDIEVVSEVNKGTEFLISLPMKGFSSEH 872



 Score = 48.5 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 48/146 (32%), Gaps = 15/146 (10%)

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
           +     +L S L+   + I + +++G I   N++    FG   E                
Sbjct: 280 LMKRESRLQSTLDVAVNSIVVFSKDGEITYANKSFRNTFGDYKEQDKLTDKIKNFNDLIE 339

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQ 566
           S+   ++ E  +  L  T +             ++   +     +      + D ++ K+
Sbjct: 340 SIHYVFVHEKNAEKLISTSDNKVYQ--------AIFAPLIIASQTEGVLCVLEDKTKKKE 391

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARV 592
            + KL        + +    DFL  +
Sbjct: 392 YERKL-------IEANKRSKDFLESI 410



 Score = 47.7 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 39/265 (14%), Positives = 78/265 (29%), Gaps = 41/265 (15%)

Query: 317 EGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
           + E+    T+D       V+S  G + YAN SF          D              KL
Sbjct: 282 KRESRLQSTLDVAVNSIVVFSKDGEITYANKSFRNTFGDYKEQD--------------KL 327

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
           +D       ++       +        I  +        F P   A+Q         +  
Sbjct: 328 TDKIKNFNDLIESIHYVFVHEKNAEKLISTSDNKVYQAIFAPLIIASQTE---GVLCVLE 384

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
           +    +  +RK+     +    LE+  DGI ++     I   N A  ++F   +E     
Sbjct: 385 DKTKKKEYERKLIEANKRSKDFLESIGDGIVVLEGNNKI-YVNNACREIFKNNLE----- 438

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555
                L   +   +          + R  ++          K + +         ++   
Sbjct: 439 SIDFSLVCKSEESI----------EKRYVIDGEV-------KYVEMSFSQYTNAGTNKTI 481

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEK 580
           + + D +  K  + KL  ++    +
Sbjct: 482 IVIRDTTSRKISQIKLEESQSSYSR 506


>gi|255307522|ref|ZP_05351693.1| putative sensor histidine kinase [Clostridium difficile ATCC 43255]
          Length = 912

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 96/515 (18%), Positives = 183/515 (35%), Gaps = 40/515 (7%)

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
                  E    + + ++       V    N  Y N +   + K            +   
Sbjct: 408 EYERKLIEANKRSKDFLESIGDGIVVLEGNNKIYVNNACREIFK-------NNLESIDFS 460

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
           L             +     D                  N   +                
Sbjct: 461 LVCKSEESIEKRYVI-----DGEVKYVEMSFSQYTNAGTNKTIIVIR------------- 502

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
                 +    +I++ K+E         ++   DGI ++  +  I   N++   +  +  
Sbjct: 503 ------DTTSRKISQIKLEESQSSYSRFIDILPDGICLLKEDLSINYANKSFLDMLAFTN 556

Query: 490 -EDILRKPFTVFLEQNTPSVM---NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
            +DI      + +  NT   M   ++    +        LE   + S  +   + L  + 
Sbjct: 557 IDDIKDSNIKLLMNANTEEKMKFTDNMAKVLNENRSILLLEYELINSYDDIVEVELSALP 616

Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
             +  +    L + D+   K  +           K    K++F A +SHE++TPL  I  
Sbjct: 617 FAIYNTRYIMLIIKDLVHKKYSEQA-EKELLERFKTDKIKTEFFANMSHELKTPLNVISS 675

Query: 606 ---FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
                +           N     + + + +S   +  ++N+++D++K+ESG   L     
Sbjct: 676 SNQLVDSFYRNEKIKDYNNNIKSHVDLVRQSSYRLQRLINNIIDLTKMESGFYTLKLAKY 735

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
           ++   + +    ++ YA  K I I          +  D   +++I LN+LSN I FT +G
Sbjct: 736 NIVSVIEDLFMNIEEYALRKDIKILFDTDLEEINVYIDKVEIERIMLNLLSNCIKFTDNG 795

Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
           G I +S  +  + +VI+ V+DTGVG+   +LE   + F Q+  +     EG+G+GL + K
Sbjct: 796 GWIYVSIHYKID-KVIISVKDTGVGIPQDKLELIFEEFSQVDKTLSRNTEGSGIGLAIVK 854

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
            +V  + G   + S   KGT   I  P+   S  H
Sbjct: 855 NLVSLHGGDIEVVSEVNKGTEFLISLPMKGFSSEH 889



 Score = 48.5 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 48/146 (32%), Gaps = 15/146 (10%)

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
           +     +L S L+   + I + +++G I   N++    FG   E                
Sbjct: 297 LMKRESRLQSTLDVAVNSIVVFSKDGEITYANKSFRNTFGDYKEQDKLTDKIKNFNDLIE 356

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQ 566
           S+   ++ E  +  L  T +             ++   +     +      + D ++ K+
Sbjct: 357 SIHYVFVHEKNAEKLISTSDNKVYQ--------AIFAPLIIASQTEGVLCVLEDKTKKKE 408

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARV 592
            + KL        + +    DFL  +
Sbjct: 409 YERKL-------IEANKRSKDFLESI 427



 Score = 47.7 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 39/265 (14%), Positives = 78/265 (29%), Gaps = 41/265 (15%)

Query: 317 EGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
           + E+    T+D       V+S  G + YAN SF          D              KL
Sbjct: 299 KRESRLQSTLDVAVNSIVVFSKDGEITYANKSFRNTFGDYKEQD--------------KL 344

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
           +D       ++       +        I  +        F P   A+Q         +  
Sbjct: 345 TDKIKNFNDLIESIHYVFVHEKNAEKLISTSDNKVYQAIFAPLIIASQTE---GVLCVLE 401

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
           +    +  +RK+     +    LE+  DGI ++     I   N A  ++F   +E     
Sbjct: 402 DKTKKKEYERKLIEANKRSKDFLESIGDGIVVLEGNNKI-YVNNACREIFKNNLE----- 455

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555
                L   +   +          + R  ++          K + +         ++   
Sbjct: 456 SIDFSLVCKSEESI----------EKRYVIDGEV-------KYVEMSFSQYTNAGTNKTI 498

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEK 580
           + + D +  K  + KL  ++    +
Sbjct: 499 IVIRDTTSRKISQIKLEESQSSYSR 523


>gi|255093477|ref|ZP_05322955.1| putative sensor histidine kinase [Clostridium difficile CIP 107932]
          Length = 908

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 96/515 (18%), Positives = 183/515 (35%), Gaps = 40/515 (7%)

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
                  E    + + ++       V    N  Y N +   + K            +   
Sbjct: 408 EYERKLIEANKRSKDFLESIGDGIVVLEGNNKIYVNNACREIFK-------NNLESIDFS 460

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
           L             +     D                  N   +                
Sbjct: 461 LVCKSEESIEKRYVI-----DGEVKYVEMSFSQYTNAGTNKTIIVIR------------- 502

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
                 +    +I++ K+E         ++   DGI ++  +  I   N++   +  +  
Sbjct: 503 ------DTTSRKISQIKLEESQSSYSRFIDILPDGICLLKEDLSINYANKSFLDMLAFTN 556

Query: 490 -EDILRKPFTVFLEQNTPSVM---NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
            +DI      + +  NT   M   ++    +        LE   + S  +   + L  + 
Sbjct: 557 IDDIKDSNIKLLMNANTEEKMKFTDNMAKVLNENRSILLLEYELINSYDDIVEVELSALP 616

Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
             +  +    L + D+   K  +           K    K++F A +SHE++TPL  I  
Sbjct: 617 FAIYNTRYIMLIIKDLVHKKYSEQA-EKELLERFKTDKIKTEFFANMSHELKTPLNVISS 675

Query: 606 ---FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
                +           N     + + + +S   +  ++N+++D++K+ESG   L     
Sbjct: 676 SNQLVDSFYRNEKIKDYNNNIKSHVDLVRQSSYRLQRLINNIIDLTKMESGFYTLKLAKY 735

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
           ++   + +    ++ YA  K I I          +  D   +++I LN+LSN I FT +G
Sbjct: 736 NIVSVIEDLFMNIEEYALRKDIKILFDTDLEEINVYIDKVEIERIMLNLLSNCIKFTDNG 795

Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
           G I +S  +  + +VI+ V+DTGVG+   +LE   + F Q+  +     EG+G+GL + K
Sbjct: 796 GWIYVSIHYKID-KVIISVKDTGVGIPQDKLELIFEEFSQVDKTLSRNTEGSGIGLAIVK 854

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
            +V  + G   + S   KGT   I  P+   S  H
Sbjct: 855 NLVSLHGGDIEVVSEVNKGTEFLISLPMKGFSSEH 889



 Score = 48.5 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 48/146 (32%), Gaps = 15/146 (10%)

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
           +     +L S L+   + I + +++G I   N++    FG   E                
Sbjct: 297 LMKRESRLQSTLDVAVNSIVVFSKDGEITYANKSFRNTFGDYKEQDKLTDKIKNFNDLIE 356

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQ 566
           S+   ++ E  +  L  T +             ++   +     +      + D ++ K+
Sbjct: 357 SIHYVFVHEKNAEKLISTSDNKVYQ--------AIFAPLIIASQTEGVLCVLEDKTKKKE 408

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARV 592
            + KL        + +    DFL  +
Sbjct: 409 YERKL-------IEANKRSKDFLESI 427



 Score = 47.7 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 39/265 (14%), Positives = 78/265 (29%), Gaps = 41/265 (15%)

Query: 317 EGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
           + E+    T+D       V+S  G + YAN SF          D              KL
Sbjct: 299 KRESRLQSTLDVAVNSIVVFSKDGEITYANKSFRNTFGDYKEQD--------------KL 344

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
           +D       ++       +        I  +        F P   A+Q         +  
Sbjct: 345 TDKIKNFNDLIESIHYVFVHEKNAEKLISTSDNKVYQAIFAPLIIASQTE---GVLCVLE 401

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
           +    +  +RK+     +    LE+  DGI ++     I   N A  ++F   +E     
Sbjct: 402 DKTKKKEYERKLIEANKRSKDFLESIGDGIVVLEGNNKI-YVNNACREIFKNNLE----- 455

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555
                L   +   +          + R  ++          K + +         ++   
Sbjct: 456 SIDFSLVCKSEESI----------EKRYVIDGEV-------KYVEMSFSQYTNAGTNKTI 498

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEK 580
           + + D +  K  + KL  ++    +
Sbjct: 499 IVIRDTTSRKISQIKLEESQSSYSR 523


>gi|254976087|ref|ZP_05272559.1| putative sensor histidine kinase [Clostridium difficile QCD-66c26]
 gi|255315220|ref|ZP_05356803.1| putative sensor histidine kinase [Clostridium difficile QCD-76w55]
 gi|255517889|ref|ZP_05385565.1| putative sensor histidine kinase [Clostridium difficile QCD-97b34]
 gi|255651005|ref|ZP_05397907.1| putative sensor histidine kinase [Clostridium difficile QCD-37x79]
          Length = 912

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 96/515 (18%), Positives = 183/515 (35%), Gaps = 40/515 (7%)

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
                  E    + + ++       V    N  Y N +   + K            +   
Sbjct: 408 EYERKLIEANKRSKDFLESIGDGIVVLEGNNKIYVNNACREIFK-------NNLESIDFS 460

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
           L             +     D                  N   +                
Sbjct: 461 LVCKSEESIEKRYVI-----DGEVKYVEMSFSQYTNAGTNKTIIVIR------------- 502

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
                 +    +I++ K+E         ++   DGI ++  +  I   N++   +  +  
Sbjct: 503 ------DTTSRKISQIKLEESQSSYSRFIDILPDGICLLKEDLSINYANKSFLDMLAFTN 556

Query: 490 -EDILRKPFTVFLEQNTPSVM---NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
            +DI      + +  NT   M   ++    +        LE   + S  +   + L  + 
Sbjct: 557 IDDIKDSNIKLLMNANTEEKMKFTDNMAKVLNENRSILLLEYELINSYDDIVEVELSALP 616

Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
             +  +    L + D+   K  +           K    K++F A +SHE++TPL  I  
Sbjct: 617 FAIYNTRYIMLIIKDLVHKKYSEQA-EKELLERFKTDKIKTEFFANMSHELKTPLNVISS 675

Query: 606 ---FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
                +           N     + + + +S   +  ++N+++D++K+ESG   L     
Sbjct: 676 SNQLVDSFYRNEKIKDYNNNIKSHVDLVRQSSYRLQRLINNIIDLTKMESGFYTLKLAKY 735

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
           ++   + +    ++ YA  K I I          +  D   +++I LN+LSN I FT +G
Sbjct: 736 NIVSVIEDLFMNIEEYALRKDIKILFDTDLEEINVYIDKVEIERIMLNLLSNCIKFTDNG 795

Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
           G I +S  +  + +VI+ V+DTGVG+   +LE   + F Q+  +     EG+G+GL + K
Sbjct: 796 GWIYVSIHYKID-KVIISVKDTGVGIPQDKLELIFEEFSQVDKTLSRNTEGSGIGLAIVK 854

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
            +V  + G   + S   KGT   I  P+   S  H
Sbjct: 855 NLVSLHGGDIEVVSEVNKGTEFLISLPMKGFSSEH 889



 Score = 48.5 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 48/146 (32%), Gaps = 15/146 (10%)

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
           +     +L S L+   + I + +++G I   N++    FG   E                
Sbjct: 297 LMKRESRLQSTLDVAVNSIVVFSKDGEITYANKSFRNTFGDYKEQDKLTDKIKNFNDLIE 356

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQ 566
           S+   ++ E  +  L  T +             ++   +     +      + D ++ K+
Sbjct: 357 SIHYVFVHEKNAEKLISTSDNKVYQ--------AIFAPLIIASQTEGVLCVLEDKTKKKE 408

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARV 592
            + KL        + +    DFL  +
Sbjct: 409 YERKL-------IEANKRSKDFLESI 427



 Score = 47.7 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 39/265 (14%), Positives = 78/265 (29%), Gaps = 41/265 (15%)

Query: 317 EGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
           + E+    T+D       V+S  G + YAN SF          D              KL
Sbjct: 299 KRESRLQSTLDVAVNSIVVFSKDGEITYANKSFRNTFGDYKEQD--------------KL 344

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
           +D       ++       +        I  +        F P   A+Q         +  
Sbjct: 345 TDKIKNFNDLIESIHYVFVHEKNAEKLISTSDNKVYQAIFAPLIIASQTE---GVLCVLE 401

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
           +    +  +RK+     +    LE+  DGI ++     I   N A  ++F   +E     
Sbjct: 402 DKTKKKEYERKLIEANKRSKDFLESIGDGIVVLEGNNKI-YVNNACREIFKNNLE----- 455

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555
                L   +   +          + R  ++          K + +         ++   
Sbjct: 456 SIDFSLVCKSEESI----------EKRYVIDGEV-------KYVEMSFSQYTNAGTNKTI 498

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEK 580
           + + D +  K  + KL  ++    +
Sbjct: 499 IVIRDTTSRKISQIKLEESQSSYSR 523


>gi|126700109|ref|YP_001089006.1| putative sensor histidine kinase [Clostridium difficile 630]
 gi|255101653|ref|ZP_05330630.1| putative sensor histidine kinase [Clostridium difficile QCD-63q42]
 gi|115251546|emb|CAJ69379.1| Two-component sensor histidine kinase,sporulation-associated spo0A
           [Clostridium difficile]
          Length = 912

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 96/515 (18%), Positives = 183/515 (35%), Gaps = 40/515 (7%)

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
                  E    + + ++       V    N  Y N +   + K            +   
Sbjct: 408 EYERKLIEANKRSKDFLESIGDGIVVLEGNNKIYVNNACREIFK-------NNLESIDFS 460

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
           L             +     D                  N   +                
Sbjct: 461 LVCKSEESIEKRYVI-----DGEVKYVEMSFSQYTNAGTNKTIIVIR------------- 502

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
                 +    +I++ K+E         ++   DGI ++  +  I   N++   +  +  
Sbjct: 503 ------DTTSRKISQIKLEESQSSYSRFIDILPDGICLLKEDLSINYANKSFLDMLAFTN 556

Query: 490 -EDILRKPFTVFLEQNTPSVM---NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
            +DI      + +  NT   M   ++    +        LE   + S  +   + L  + 
Sbjct: 557 IDDIKDSNIKLLMNANTEEKMKFTDNMAKVLNENRSILLLEYELINSYDDIVEVELSALP 616

Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
             +  +    L + D+   K  +           K    K++F A +SHE++TPL  I  
Sbjct: 617 FAIYNTRYIMLIIKDLVHKKYSEQA-EKELLERFKTDKIKTEFFANMSHELKTPLNVISS 675

Query: 606 ---FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
                +           N     + + + +S   +  ++N+++D++K+ESG   L     
Sbjct: 676 SNQLVDSFYRNEKIKDYNNNIKSHVDLVRQSSYRLQRLINNIIDLTKMESGFYTLKLAKY 735

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
           ++   + +    ++ YA  K I I          +  D   +++I LN+LSN I FT +G
Sbjct: 736 NIVSVIEDLFMNIEEYALRKDIKILFDTDLEEINVYIDKVEIERIMLNLLSNCIKFTDNG 795

Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
           G I +S  +  + +VI+ V+DTGVG+   +LE   + F Q+  +     EG+G+GL + K
Sbjct: 796 GWIYVSIHYKID-KVIISVKDTGVGIPQDKLELIFEEFSQVDKTLSRNTEGSGIGLAIVK 854

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
            +V  + G   + S   KGT   I  P+   S  H
Sbjct: 855 NLVSLHGGDIEVVSEVNKGTEFLISLPMKGFSSEH 889



 Score = 48.5 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 48/146 (32%), Gaps = 15/146 (10%)

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
           +     +L S L+   + I + +++G I   N++    FG   E                
Sbjct: 297 LMKRESRLQSTLDVAVNSIVVFSKDGEITYANKSFRNTFGDYKEQDKLTDKIKNFNDLIE 356

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQ 566
           S+   ++ E  +  L  T +             ++   +     +      + D ++ K+
Sbjct: 357 SIHYVFVHEKNAEKLISTSDNKVYQ--------AIFAPLIIASQTEGVLCVLEDKTKKKE 408

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARV 592
            + KL        + +    DFL  +
Sbjct: 409 YERKL-------IEANKRSKDFLESI 427



 Score = 47.7 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 39/265 (14%), Positives = 78/265 (29%), Gaps = 41/265 (15%)

Query: 317 EGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
           + E+    T+D       V+S  G + YAN SF          D              KL
Sbjct: 299 KRESRLQSTLDVAVNSIVVFSKDGEITYANKSFRNTFGDYKEQD--------------KL 344

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
           +D       ++       +        I  +        F P   A+Q         +  
Sbjct: 345 TDKIKNFNDLIESIHYVFVHEKNAEKLISTSDNKVYQAIFAPLIIASQTE---GVLCVLE 401

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
           +    +  +RK+     +    LE+  DGI ++     I   N A  ++F   +E     
Sbjct: 402 DKTKKKEYERKLIEANKRSKDFLESIGDGIVVLEGNNKI-YVNNACREIFKNNLE----- 455

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555
                L   +   +          + R  ++          K + +         ++   
Sbjct: 456 SIDFSLVCKSEESI----------EKRYVIDGEV-------KYVEMSFSQYTNAGTNKTI 498

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEK 580
           + + D +  K  + KL  ++    +
Sbjct: 499 IVIRDTTSRKISQIKLEESQSSYSR 523


>gi|85708111|ref|ZP_01039177.1| sensory box histidine kinase/response regulator [Erythrobacter sp.
           NAP1]
 gi|85689645|gb|EAQ29648.1| sensory box histidine kinase/response regulator [Erythrobacter sp.
           NAP1]
          Length = 649

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 112/647 (17%), Positives = 231/647 (35%), Gaps = 33/647 (5%)

Query: 178 FRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK 237
           ++G  ++ +             L        E     +   +                + 
Sbjct: 20  YKGVVVIALPLAILIGALASLYLASNAEAEAEDDVRRAFAIQRDIYQVRAMLAEAAAGVG 79

Query: 238 NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297
           +   +  + +    + ++ +  P L   + ++ +              +Q     +    
Sbjct: 80  DYALTREDRFLEPYERMENQLSPTLQRLDVAIEDDRVQAGFQDLLRVVEQ-----KREGL 134

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKS 356
                L+    PS     +E    +  T+D        +     +       L+      
Sbjct: 135 RETIALAQSPQPSTQTEIEESLLASKMTLDAVREEIDNIQRLEAIVLDERRALVDDVRSR 194

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
              +    G+  LL +       +   V             AR        E    +   
Sbjct: 195 FFALTAVSGIVGLLGSLMAVYLFSTGIVRRVSKLEQNAEMLAR-------GERLTELPEE 247

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINREGIIL 475
             E        +  + +       R  +  +     +   ++E   D GI  ++  GI+ 
Sbjct: 248 ADEIGRLSQRLVGASALL------RKREDDLRASEERFRLVIERVRDYGIFTLDTGGIVT 301

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
           S N    ++ G+  E+IL + F+ F   +T   +   +  +         E       K+
Sbjct: 302 SWNLGAERIKGWQAEEILGQHFSQFYPDDTRDYLPDQM--LERARAEGAAEDEGWRVRKD 359

Query: 536 EKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
             +    ++I  L         ++    D++E ++ ++ L  A++ A   S  KS+FL+R
Sbjct: 360 GSVFWANVVITALRNEAGELQGFAKVTRDMTERRRSEDALRLAREDAVAASLAKSEFLSR 419

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
            SHE+RTPL AI+GF +++  +      +  + E    I R+G  +L ++NDLLDIS IE
Sbjct: 420 TSHELRTPLNAILGFGQLL--EIDLEDFSQPHQEAVERITRAGRHLLSLINDLLDISSIE 477

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
           +G   L +E V +   + E   L +   +   +    +      +++AD R + Q+ LN+
Sbjct: 478 AGGAELEYEEVDVAAMLEEVHDLAEPIVSSAGLSFEMALPEAGAKVVADRRRMTQVILNL 537

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           + NA  +   G  + +  +   +      V D G G+      +    F ++   ++ + 
Sbjct: 538 VGNAAKYNVEGSFVRLGASLDGDGAATFFVEDDGPGIDPANASRLFTAFDRLGQHKRDKT 597

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
           EGTGLGL L+K +V++  G+   +S    G+          +S P +
Sbjct: 598 EGTGLGLALSKGLVESMGGQIG-YSPRKPGSRFWFTL----SSQPTE 639



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/251 (8%), Positives = 58/251 (23%), Gaps = 8/251 (3%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID--PNNHIGDLLKRQNTW 143
            + +D  G +   +    +  G  A +++G            D  P+  +          
Sbjct: 291 IFTLDTGGIVTSWNLGAERIKGWQAEEILGQHFSQFYPDDTRDYLPDQMLERARAEGAA- 349

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +      +G+  +  + + AL   +   E  GF    +              +   + 
Sbjct: 350 EDEGWRVRKDGSVFWANVVITAL--RNEAGELQGFAK--VTRDMTERRRSEDALRLARED 405

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
                  K    S    +              ++  +   ++ +    + +      LL+
Sbjct: 406 AVAASLAKSEFLSRTSHELRTPLNAILGFGQLLEIDLEDFSQPHQEAVERITRAGRHLLS 465

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
                L +             ++     +     +  E +      S      E      
Sbjct: 466 LINDLL-DISSIEAGGAELEYEEVDVAAMLEEVHDLAEPIVSSAGLSFEMALPEAGAKVV 524

Query: 324 ETVDKCPIPFF 334
               +      
Sbjct: 525 ADRRRMTQVIL 535


>gi|209525380|ref|ZP_03273921.1| GAF sensor hybrid histidine kinase [Arthrospira maxima CS-328]
 gi|209494231|gb|EDZ94545.1| GAF sensor hybrid histidine kinase [Arthrospira maxima CS-328]
          Length = 625

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 83/253 (32%), Positives = 131/253 (51%), Gaps = 6/253 (2%)

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN-----QRFGPLG 619
           K+    L  A   A+  +  KS+FLA +SHE+RTPLT +IG S  +         F  L 
Sbjct: 227 KERTQALHDALLAAQCANRAKSEFLATMSHELRTPLTHVIGISSTLLRLYSQPDNFPALP 286

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
             +   Y   I  SG  +L ++ND+LD+S++ESGK  L F   SL +   + +  ++ +A
Sbjct: 287 LEKQKHYLQTIHDSGENLLALINDILDLSQVESGKTVLKFSEFSLQKLAQQCLHTLRDFA 346

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
            EK + +      +     AD R V+QI LN+LSNAI FTP GG++ ++ +       I 
Sbjct: 347 KEKGVNVNLQIKVDQDLFRADYRRVRQILLNLLSNAIKFTPKGGRVTLTVSRKDK-TAIF 405

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
           +V+DTG+G++  +     + F Q+ +  + +  GTGLGL L K +V+ + G     S   
Sbjct: 406 QVKDTGIGISKEQQSLLFEKFQQLDSPYRRQYGGTGLGLALTKQLVELHGGSIQFESEVG 465

Query: 800 KGTLIEIIFPLYD 812
            GT   +  P+  
Sbjct: 466 LGTKFTVYIPIQP 478


>gi|260459357|ref|ZP_05807612.1| PAS/PAC sensor signal transduction histidine kinase [Mesorhizobium
            opportunistum WSM2075]
 gi|259034911|gb|EEW36167.1| PAS/PAC sensor signal transduction histidine kinase [Mesorhizobium
            opportunistum WSM2075]
          Length = 1186

 Score =  312 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 96/743 (12%), Positives = 207/743 (27%), Gaps = 42/743 (5%)

Query: 87   WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL-LKRQNTWYG 145
            W+    GY   +++      G    + +G                      L        
Sbjct: 440  WSTLPDGYCDFLNDRWLDYAGFTEDQAVGWAWAAAIHPDDASGLAEYWQSCLASGTPVST 499

Query: 146  KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
            +  +   +G   Y      A P+          R +G               +  ++   
Sbjct: 500  EARIRRYDGE--YRWFLFLANPLRDEAGTII--RWYGTNVDIEDRKRADQALRESERNLR 555

Query: 206  HLHEIKKGHSSVEKEKY-----DIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
             +           +                   +            +    D L      
Sbjct: 556  QIINTIPTAIWSTRPDGYCDFLHDRWLDFTGLSMEQAEGWGWRVAIHPDDFDELVRFWKA 615

Query: 261  LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY----LSHRNHPSLSAYFD 316
             L S       +      +           TL++ +     +    +   +         
Sbjct: 616  SLASGSPG-ETEARMRRFDGEYRWFLFLGDTLRDEAGNIVRWYGTNVEIDDRKRAEQALV 674

Query: 317  EGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
            E E  +   V+  P    ++   G     N  FL       +++        T+      
Sbjct: 675  ESERQSRLIVNTIPGLVAIFDEDGEPESLNEQFLEYLGQT-LEEFAHWATNGTVHPDDL- 732

Query: 376  SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
              +  I  +         I    RL   +                       +    +  
Sbjct: 733  --SRHIDALTQSLGTGRGIDFETRL---RRFDGTYRWFQLRGQPLRASNGCIVRWYVLMT 787

Query: 436  EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE-DILR 494
            +  D +  + ++      L         G    +     +  +  + ++F       +  
Sbjct: 788  DIDDRKRAEEELRRSEAFLAEGQNLARMGSFSWDVSKAEMVWSEQLYRIFDLQPGLHVTF 847

Query: 495  KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP-FSSC 553
            +            ++   +      +         + S +  K L L     +    +  
Sbjct: 848  QLIASRFHPEDMPMLGDMVERAERGENDLEYRHRIITSDRSIKHLHLIAHGVRNSIGAME 907

Query: 554  YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS--DFLARVSHEIRTPLTAIIGFS-EVI 610
            Y   + DI++ +  +  L   +          S     A ++HE+  PL  II  +   +
Sbjct: 908  YIGAVLDITQRRLSEEALEKVRTELGLAMRIMSLGALTASIAHEVNQPLAGIITNAGTCL 967

Query: 611  KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
            +     P       E A    R GN   D++  L  +    +  M    EPV L+EA+ E
Sbjct: 968  RMLADDPPNINGARETARRTIRDGNRAADVITRLRALFSKRAAVM----EPVDLNEAIRE 1023

Query: 671  AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF----TPSGGQII 726
             I+L         I + T  A  +P    D   ++Q+ +N+L NAI      +    +++
Sbjct: 1024 VIALSLGELQRNSISLITKLATGLPMAAGDRVQLQQVIMNLLRNAIDAVMTVSDRPRRVV 1083

Query: 727  ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
            I+T    +  + L V D G+G    ++E+  + F            G G+GL +++++++
Sbjct: 1084 IATELGEDGNIRLSVEDAGIGFGAQDMEQIFEAFYTTKAD------GMGIGLSVSRSIIE 1137

Query: 787  ANMGKFYIFSTPAKGTLIEIIFP 809
             + G+ +  +    G  +    P
Sbjct: 1138 NHRGRIWAEANDGSGVTVCFSIP 1160



 Score =  172 bits (437), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 52/520 (10%), Positives = 132/520 (25%), Gaps = 32/520 (6%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL-LKRQNTWYG 145
           W+    GY   +++      G  + + +G                      L        
Sbjct: 314 WSTLPDGYCDFLNDRWLDYAGFTSDQAVGWAWAAAIHPDDASGLAEYWQSCLASGTPVST 373

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +  +   +G   Y      A P+          R +G               +  +    
Sbjct: 374 EARIRRFDGE--YRWFLFLANPLRDEAGTII--RWYGTNVDIEDRKRADQALRDSEVNLR 429

Query: 206 HLHEIKKGHSSVEKEKY----DIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
            +       +                         +    +        D     E +  
Sbjct: 430 KIINTIPTSAWSTLPDGYCDFLNDRWLDYAGFTEDQAVGWAWAAAIHPDDASGLAEYWQS 489

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY----LSHRNHPSLSAYFDE 317
             +  + +  +      +            L++ +     +    +   +         E
Sbjct: 490 CLASGTPVSTEARIRRYDGEYRWFLFLANPLRDEAGTIIRWYGTNVDIEDRKRADQALRE 549

Query: 318 GENLTPETVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
            E    + ++  P   +         + +  +L  T        E  G    +       
Sbjct: 550 SERNLRQIINTIPTAIWSTRPDGYCDFLHDRWLDFTGLSMEQA-EGWGWRVAIHPDDF-- 606

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
            +  ++      +  +     AR+   +          F+     ++    +   G   E
Sbjct: 607 -DELVRFWKASLASGSPGETEARM---RRFDGEYRWFLFLGDTLRDEAGNIVRWYGTNVE 662

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             D +  ++ +     Q   I+      +AI + +G   S N    +  G  +E+     
Sbjct: 663 IDDRKRAEQALVESERQSRLIVNTIPGLVAIFDEDGEPESLNEQFLEYLGQTLEEFAHWA 722

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--- 553
               +  +  S     LT+ L     + ++  T     +      ++  + L  S+    
Sbjct: 723 TNGTVHPDDLSRHIDALTQSLGTG--RGIDFETRLRRFDGTYRWFQLRGQPLRASNGCIV 780

Query: 554 -YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
            + + M DI + K+ + +L        +    +   LAR+
Sbjct: 781 RWYVLMTDIDDRKRAEEEL-----RRSEAFLAEGQNLARM 815



 Score =  104 bits (259), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 48/401 (11%), Positives = 101/401 (25%), Gaps = 19/401 (4%)

Query: 181 FGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV 240
           F  + +N+   +      R  ++F+   E          E               +   V
Sbjct: 38  FAYIRLNQSSYEEPVEVARAGQQFAVSPEAIIREFHGLNEVDLADWPLLNSFQGDVPISV 97

Query: 241 SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ---NNSK 297
           ++L         VL         S     P Q D   +N+           L+   +  +
Sbjct: 98  AALRLGILADIGVL------FTGSRRVDFPLQTDSLVLNVAANQAGVRLQELKLSSDRRR 151

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKS 356
            + E               E E+      D  P    V +  G +   N         K 
Sbjct: 152 LAKESYEIAAEEPSEVAVRENEDDAKLIADSIPAGIAVLTPTGEIEAVNSYIAGYFG-KP 210

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
            D+++  G   T+  A        ++               ARL                
Sbjct: 211 KDELKGWGTAETVHPADI---QRVVESFRYSIKAGMPYEVEARLL---GADNKYRWFQIR 264

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476
                ++    M    +  +  + +  +  +    + L  I+            +G    
Sbjct: 265 GLPLEDRNGRIMRWYSLHIDIDERKQAEEALRESEVNLRKIINTIPTSAWSTLPDGYCDF 324

Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
            N       G+  +  +   +   +  +  S +  Y    L+     + E        E 
Sbjct: 325 LNDRWLDYAGFTSDQAVGWAWAAAIHPDDASGLAEYWQSCLASGTPVSTEARIRRFDGEY 384

Query: 537 KLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAK 575
           +         +    +   +  T  DI + K+    L  ++
Sbjct: 385 RWFLFLANPLRDEAGTIIRWYGTNVDIEDRKRADQALRDSE 425



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 37/387 (9%), Positives = 90/387 (23%), Gaps = 17/387 (4%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL-LKRQNTWY 144
            W+    GY   + +      G    +  G            D         L   +   
Sbjct: 565 IWSTRPDGYCDFLHDRWLDFTGLSMEQAEGWGWRVAIHPDDFDELVRFWKASLASGSPGE 624

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            +  +   +G   Y         +          R +G                  +++ 
Sbjct: 625 TEARMRRFDGE--YRWFLFLGDTLRDEAGNIV--RWYGTNVEIDDRKRAEQALVESERQS 680

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
             +     G  ++  E  +  S          +   + +          D L      L 
Sbjct: 681 RLIVNTIPGLVAIFDEDGEPESLNEQFLEYLGQTLEEFAHWATNGTVHPDDLSRHIDALT 740

Query: 263 TSEESSLP--EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
            S  +      +      +      +     L+ ++     +             +E   
Sbjct: 741 QSLGTGRGIDFETRLRRFDGTYRWFQLRGQPLRASNGCIVRWYVLMTDIDDRKRAEEELR 800

Query: 321 LTPETVDKCPIPFFVYSHGNLFYANPSFLLLTK---YKSVDDIEIAGGLSTLLDAPKLSD 377
            +            +   G+  +      ++     Y+  D          L+ +    +
Sbjct: 801 RSEA---FLAEGQNLARMGSFSWDVSKAEMVWSEQLYRIFDLQPGLHVTFQLIASRFHPE 857

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
           +  +   M+ R++R       R   I  +R        +           M   G   + 
Sbjct: 858 DMPMLGDMVERAERGENDLEYRHRIITSDRSIKHL--HLIAHGVRNSIGAMEYIGAVLDI 915

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDG 464
              R+++  +E    +L   +   S G
Sbjct: 916 TQRRLSEEALEKVRTELGLAMRIMSLG 942


>gi|16078463|ref|NP_389282.1| sporulation-specific ATP-dependent protein histidine kinase
           [Bacillus subtilis subsp. subtilis str. 168]
 gi|221309268|ref|ZP_03591115.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221313595|ref|ZP_03595400.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221318517|ref|ZP_03599811.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221322791|ref|ZP_03604085.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|3041695|sp|P16497|KINA_BACSU RecName: Full=Sporulation kinase A; AltName: Full=Stage II
           sporulation protein F; AltName: Full=Stage II
           sporulation protein J
 gi|143333|gb|AAA22664.1| protein kinase kinA [Bacillus subtilis]
 gi|2632220|emb|CAA10862.1| KinA protein [Bacillus subtilis]
 gi|2633770|emb|CAB13272.1| sporulation-specific ATP-dependent protein histidine kinase
           [Bacillus subtilis subsp. subtilis str. 168]
          Length = 606

 Score =  312 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 103/508 (20%), Positives = 202/508 (39%), Gaps = 34/508 (6%)

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364
           H   P+         +     V+  P P  +   G + Y N + L +   KS D I    
Sbjct: 128 HEIEPASPESTTYITDDYERLVENLPSPLCISVKGKIVYVNSAMLSMLGAKSKDAIIGKS 187

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
                    +  D    + + + +           +    W R +   +          +
Sbjct: 188 SYE--FIEEEYHDIVKNRIIRMQKG------MEVGMIEQTWKRLDGTPVHLEVKASPTVY 239

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
                +  +  +    +  +  ++    +   +++ + D IA+I   G  +  N +   L
Sbjct: 240 KNQQAELLLLIDISSRKKFQTILQKSRERYQLLIQNSIDTIAVI-HNGKWVFMNESGISL 298

Query: 485 FGY-PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           F     ED++ K     L       +   +  I        + K +   T + +++   +
Sbjct: 299 FEAATYEDLIGKNIYDQLHPCDHEDVKERIQNIAEQKTESEIVKQSWF-TFQNRVIYTEM 357

Query: 544 IIKKLP--FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
           +         +   + + DISE KQ +  +  ++K++           A ++HEIR PLT
Sbjct: 358 VCIPTTFFGEAAVQVILRDISERKQTEELMLKSEKLSIA-----GQLAAGIAHEIRNPLT 412

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           AI GF +++K    G         Y + +    + +  I+++LL ++K +   +    E 
Sbjct: 413 AIKGFLQLMKPTMEGNE------HYFDIVFSELSRIELILSELLMLAKPQQNAVK---EY 463

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           ++L + + E  +L++  AN   I IRTS+  +   I  D   +KQ+ +N++ NA+   P 
Sbjct: 464 LNLKKLIGEVSALLETQANLNGIFIRTSYEKDSIYINGDQNQLKQVFINLIKNAVESMPD 523

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           GG + I  T      V + V+D G G+    L +  +PF         + +GTGLGL + 
Sbjct: 524 GGTVDIIIT-EDEHSVHVTVKDEGEGIPEKVLNRIGEPFLTT------KEKGTGLGLMVT 576

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             +++ + G  ++ S P KGT  +I FP
Sbjct: 577 FNIIENHQGVIHVDSHPEKGTAFKISFP 604


>gi|258517266|ref|YP_003193488.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257780971|gb|ACV64865.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 679

 Score =  312 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 98/373 (26%), Positives = 187/373 (50%), Gaps = 10/373 (2%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGII--LSTNRAVSKLFGYPVEDILRKPFTVFL 501
           + K++ +   L +++++  D I  ++  GI   + TN    K+   PV+ ++  P    +
Sbjct: 308 QAKLKKKESDLQALIKSIDDIIFEVDENGIFKNVWTNS--EKILLMPVDQVIGNPIQSII 365

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDI 561
             +   +    + +++        E +        +   +RI        S  S++M DI
Sbjct: 366 APDKSDIYLSKIKQVIENQEPDVFEYMMDTLYG-RRWYLVRIAPIASELKS-VSVSMRDI 423

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           SE K+ +  +  AK+  EK S  KS FL+ +SHE+RTPL A++GFS++++  +  PL N 
Sbjct: 424 SERKEMEKSIIAAKEETEKASMAKSQFLSNMSHELRTPLNAVLGFSQILQMDKSAPLDNS 483

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
              E    I ++GN +L ++N++LD++KIESGK+N+  EPV +   + E ++ ++  A E
Sbjct: 484 -QSESVKEIVKAGNHLLMLINEILDLAKIESGKLNILIEPVKILPIIEETVAFIKPLAKE 542

Query: 682 KRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
             I I  +  + + + +LAD   ++Q+ LN+ SNA+ +  + G++           +   
Sbjct: 543 NDIEIAINPRDCMEQYVLADSIRLRQVLLNLFSNAVKYNYNSGKVSFYCEKIDK-FIRFN 601

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           + D+G+G+ + +L     PF ++        EGTG+GL  AK +V+   G   + S   +
Sbjct: 602 ILDSGLGIPSAQLPAIFDPFYRL-PITANNVEGTGIGLAAAKQLVELMGGNINVKSQEGQ 660

Query: 801 GTLIEIIFPLYDT 813
           G+      P  + 
Sbjct: 661 GSHFWFDIPCAEA 673


>gi|303327943|ref|ZP_07358382.1| sensory box sensor histidine kinase/response regulator
           [Desulfovibrio sp. 3_1_syn3]
 gi|302861769|gb|EFL84704.1| sensory box sensor histidine kinase/response regulator
           [Desulfovibrio sp. 3_1_syn3]
          Length = 825

 Score =  312 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 119/664 (17%), Positives = 228/664 (34%), Gaps = 82/664 (12%)

Query: 224 IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY 283
               + PPP       V        +                  +             ++
Sbjct: 35  FAGPELPPPFSADHFPVGGFFGAALNGPQRKSFHAAWETALAGKAAEILLAMGGGAQERF 94

Query: 284 TKKQYFGTLQNNSKESFEYLSHRNHPSLSA-YFDEGENLTPETVDKCPIPFFVYSHG-NL 341
              +    ++  + E   +L   +  S  A   +       + +D  PI + ++     +
Sbjct: 95  FFLRLV--MRRVAGELCCWLMLHDVTSFRAHASESLSERLRQCLDAAPIAYSLWDAHMRV 152

Query: 342 FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401
              N + + L                    +P+   + ++    + +  R          
Sbjct: 153 VDCNEAAVRLFGLPDKQSFLKRFFA----LSPERQYDGSLSEATILQKLRQAFVEGHAKF 208

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC------ 455
                      M      +  +            E  + R  +  +      L       
Sbjct: 209 PWTHCTITGDPMPVEVSLERLEIRGECYVASYVYELREIRRLEEALRKRNEDLRHSNSLL 268

Query: 456 SILEATSDGIAI---------------------INREGIILSTNRAVS-------KLFGY 487
            ++   ++ + +                        +   +  NR          +L+ +
Sbjct: 269 RVVNNAAEMLLLGEDNDEIGGMAYRMLAALGTAARADRAYVWANRVGEDGRLYCDQLYEW 328

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE----EKLLSLRI 543
               I ++   +    +    M  +        +   L +      +E    + +LSL +
Sbjct: 329 SGGAIPQQRKELVRNVSYDDAMPDWKRAFGEGRVVAGLVREMSPKEREVLEPQGILSLLV 388

Query: 544 IIKKLPFSSCYSLTMHDISE------------------------WKQEKNKLSHAKKIAE 579
               L       + + D                            ++    L  AK+ AE
Sbjct: 389 TPILLDGGVWGFIGLDDCHREREWNCAEEEALRAAGILLGASIRRRELNRALRLAKEEAE 448

Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639
             +  KSDFLAR+SHEIRTP+ AI+G   ++ N       + +  +Y     ++   +LD
Sbjct: 449 AGTRAKSDFLARMSHEIRTPMNAILGMCHLLLNTGL----SEQQRDYLCKTRQAARNLLD 504

Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RIL 698
           I+ND+LD SKIESGK ++   P  L E +    ++  + A EK I +  + + ++P  ++
Sbjct: 505 IINDILDFSKIESGKFDVETAPFPLAEMLDGIRNVAGVRAAEKGIRLSVAASPDMPGELV 564

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELE 754
            D   V Q+ +N++SNA+ FT  G ++ +S +     E     +  VRDTG+GM+  E+ 
Sbjct: 565 GDALRVSQVLINLVSNAVKFTERG-EVAVSVSPRHRREDSLLALFEVRDTGIGMSREEVA 623

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP--LYD 812
           +  +PF Q   S   R  GTGLGL + K +V+   GK  + S P +G++     P  L D
Sbjct: 624 RIFRPFTQTDTSITRRYGGTGLGLVICKELVEMMGGKISVSSEPGRGSIFCFELPFKLPD 683

Query: 813 TSHP 816
            + P
Sbjct: 684 AAIP 687



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/270 (12%), Positives = 78/270 (28%), Gaps = 20/270 (7%)

Query: 322 TPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
           T E +   P P  +      + +A P    L    S D   + G     L+ P+      
Sbjct: 13  TGEVLRLFPCPLIILDMEQRVLFAGP---ELPPPFSADHFPVGGFFGAALNGPQR----- 64

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
                 + +  T +A  A    +           F+         E      +       
Sbjct: 65  ---KSFHAAWETALAGKAAEILLAMGGGAQERFFFLRLVMRRVAGELCCWLMLHDVTSFR 121

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
                 +     +L   L+A     ++ +    ++  N A  +LFG P +    K F   
Sbjct: 122 AHASESL---SERLRQCLDAAPIAYSLWDAHMRVVDCNEAAVRLFGLPDKQSFLKRFFAL 178

Query: 501 LEQNTPSVMNHY---LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL--PFSSCYS 555
             +            L ++    +    +      T     + + + +++L        +
Sbjct: 179 SPERQYDGSLSEATILQKLRQAFVEGHAKFPWTHCTITGDPMPVEVSLERLEIRGECYVA 238

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
             ++++ E ++ +  L    +     +S  
Sbjct: 239 SYVYELREIRRLEEALRKRNEDLRHSNSLL 268



 Score = 39.6 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 34/313 (10%), Positives = 75/313 (23%), Gaps = 25/313 (7%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR-QNTWYGKTT 148
           DAH  + + +E   +  G    +    R   +S     D +     +L++ +  +     
Sbjct: 147 DAHMRVVDCNEAAVRLFGLPDKQSFLKRFFALSPERQYDGSLSEATILQKLRQAFVEGHA 206

Query: 149 LWP-----IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
            +P     I G  + V + L  L I              +        + R L + L K+
Sbjct: 207 KFPWTHCTITGDPMPVEVSLERLEIRGE---------CYVASYVYELREIRRLEEALRKR 257

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
              L         V      +   +       M  ++ +     A  D            
Sbjct: 258 NEDLRHSNSLLRVVNNAAEMLLLGEDNDEIGGMAYRMLAALGTAARADRAYVWANRVGED 317

Query: 264 SEESSLPEQE----DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
                    E                  Y   + +  +   E           +  +   
Sbjct: 318 GRLYCDQLYEWSGGAIPQQRKELVRNVSYDDAMPDWKRAFGEGRVVAGLVREMSPKEREV 377

Query: 320 NLTPETVDKCPIPFFVYSH--GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
                 +     P  +     G +   +            + +  AG    +L    +  
Sbjct: 378 LEPQGILSLLVTPILLDGGVWGFIGLDDCHREREWNCAEEEALRAAG----ILLGASIRR 433

Query: 378 NNAIKPVMLYRSD 390
               + + L + +
Sbjct: 434 RELNRALRLAKEE 446


>gi|224372016|ref|YP_002606181.1| sensory box histidine kinase/response regulator protein
           [Desulfobacterium autotrophicum HRM2]
 gi|223694735|gb|ACN18017.1| sensory box histidine kinase/response regulator protein
           [Desulfobacterium autotrophicum HRM2]
          Length = 1050

 Score =  312 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 98/531 (18%), Positives = 180/531 (33%), Gaps = 52/531 (9%)

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEI 362
                       E E     T    P    +     G     N  F  +  Y S + I  
Sbjct: 413 IETRTKAIQDLQESEEKFRMTFLSSPDSINLNRVEDGMYLEINKGFTKIMGYSSEEAIGK 472

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
                 + + PK  D    + V   + D       A       + +  + +         
Sbjct: 473 YSRDLNIWNDPKDRD----RLVSWLKKDGFVENLEAEFTG--KDGQIKVGLISARIL--- 523

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
           +         I  +  + +  +         L +I E  ++G+ I +  G I   N A  
Sbjct: 524 KIGNENVILSITRDITERKQMEA---DRERHLAAI-EQIAEGVVITDTVGNIEYINPAFK 579

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
           K+ GY  ++++ K   +             L E +      T         K       +
Sbjct: 580 KITGYQKQELIGKNSRILKSGEHDESFYRQLWETILTGN--TWNGRLTNKKKNGSFYIEK 637

Query: 543 IIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
             I  +   S     +     DI++  + +  +  ++K+              ++H+   
Sbjct: 638 NTISPVLDKSGKIINFVAVKRDITDKIRMEKVVQQSQKM-----ESIGTLAGGIAHDFNN 692

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
            L  I+G SE++         +  Y E  N I        D+V+ +L  S+ ES ++ L 
Sbjct: 693 ILFPIVGHSEMLLEDVS---DDNPYRESINEIYTGSLRARDLVHQILAFSRQESSELKLM 749

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718
                +   + EA+ L++       I I  +   N   + AD   + QI +N+  NA H 
Sbjct: 750 K----MQPIIKEALKLIRSTIPT-TISISQNLQPNCGTVKADPTQIHQIVMNLAINAYHA 804

Query: 719 TPS-GGQIIISTTHTS-------------NEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764
               GG++ +S                  +  V L + DTG GM    ++K   PF    
Sbjct: 805 MEERGGELKVSLKKVELRQYDFINPDMTNDSYVCLTIEDTGTGMDKKTIDKIFDPFFTTK 864

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
                +G+GTG+GL +   +V +  G+  ++S P KGT   I  P+  +++
Sbjct: 865 ----EKGKGTGMGLSVVHGIVKSMNGEVQVYSEPGKGTQFHIYLPVVKSAN 911



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/173 (10%), Positives = 47/173 (27%), Gaps = 5/173 (2%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147
            D  G ++ I+    K  G    ++IG     +    H +     + + +   NTW G+ 
Sbjct: 565 TDTVGNIEYINPAFKKITGYQKQELIGKNSRILKSGEHDESFYRQLWETILTGNTWNGRL 624

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
           T     G+       ++  P+  ++ +   F    +            + ++  K  S  
Sbjct: 625 TNKKKNGSFYIEKNTIS--PVLDKSGKIINF--VAVKRDITDKIRMEKVVQQSQKMESIG 680

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
                         + I             +     +    +   +   +   
Sbjct: 681 TLAGGIAHDFNNILFPIVGHSEMLLEDVSDDNPYRESINEIYTGSLRARDLVH 733


>gi|242280788|ref|YP_002992917.1| histidine kinase [Desulfovibrio salexigens DSM 2638]
 gi|242123682|gb|ACS81378.1| histidine kinase [Desulfovibrio salexigens DSM 2638]
          Length = 1375

 Score =  312 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 85/261 (32%), Positives = 141/261 (54%), Gaps = 8/261 (3%)

Query: 559  HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
             +I E K+ + +L  A    E+ +  KS FLA +SHEIRTPL +I+G ++++KN      
Sbjct: 844  QEIEEHKKTEKRLEQAILRTEEANEAKSAFLASMSHEIRTPLNSILGVADLLKNTDL--- 900

Query: 619  GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
             +    EY N  + SG ++L I+ND+LD SKIE+  + L   PV L +     + L    
Sbjct: 901  -SDEQGEYVNIFESSGEILLTIINDILDFSKIEANHVKLENIPVDLLQETESLMQLQATA 959

Query: 679  ANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSN-- 734
            A+ + + +   +  ++P  +L D   ++QI LNIL+NA+ FT SG   I++S +  SN  
Sbjct: 960  ASSRHVELVMRYKPDVPEIVLGDSTRIRQILLNILANAVKFTSSGEVSIVVSRSPESNST 1019

Query: 735  EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
            + +   + DTG+G+   +L+   +PF Q  +S   +  G+GLGL +++ + +   G    
Sbjct: 1020 DNITFTISDTGIGIAPEKLDSIFEPFSQADSSTTRKYGGSGLGLSISRKLAELMGGTITA 1079

Query: 795  FSTPAKGTLIEIIFPLYDTSH 815
             STP KG+   +  PL     
Sbjct: 1080 SSTPGKGSTFMVTLPLPRAPQ 1100


>gi|326405972|gb|ADZ63043.1| Two-component sensor histidine kinase [Lactococcus lactis subsp.
           lactis CV56]
          Length = 480

 Score =  312 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 79/384 (20%), Positives = 155/384 (40%), Gaps = 38/384 (9%)

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
           D    +  +E +  QL SIL    DG+   +R G I+  N++         + +++K   
Sbjct: 100 DIVRTQNNLENQRNQLDSILAYMVDGVIATDRRGNIIMANKSALHYLNTDNDLLMQKNIV 159

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS--- 555
             L+          L +          E          + +SL I        S +    
Sbjct: 160 EVLKITDQYNFYDLLEKEP--------EITIETHDSGNESISLHIKFSLFRRESGFISGI 211

Query: 556 -LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
              +HD++E  + + +              +  F++ VSHE+RTPLT++  + E +++  
Sbjct: 212 IAVLHDMTEQDKAERE--------------RRLFVSNVSHELRTPLTSVKAYLEALEDGA 257

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS----- 669
                      + N      N ++ +++DLL +S+++  ++ L+ E ++L   +      
Sbjct: 258 I--EDKETASSFINVSLTETNRMIRMISDLLTLSRMDQDRIVLNKEMINLIAFLDYQINR 315

Query: 670 --EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727
             + +             +   ++     +  D   + Q+  NI+ NAI ++P GG I I
Sbjct: 316 LDQILETESNDLISSNFTLVRKYSEQPIWVEIDTDKIAQVIDNIIGNAIKYSPKGGTITI 375

Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN-SQQIRGEGTGLGLPLAKAMVD 786
           S     ++ V++ + D G+G+   +L K    F ++ N S+  +  GTGLGL +   +V 
Sbjct: 376 SVEKRESD-VLISISDQGMGIPKSDLLKIFDRFYRVDNASRNSKVGGTGLGLSIVHDIVK 434

Query: 787 ANMGKFYIFST-PAKGTLIEIIFP 809
            + G  +  S    KGT      P
Sbjct: 435 IHGGTIFASSEGEGKGTTFSFTLP 458


>gi|223932686|ref|ZP_03624685.1| PAS/PAC sensor signal transduction histidine kinase [Streptococcus
           suis 89/1591]
 gi|223898656|gb|EEF65018.1| PAS/PAC sensor signal transduction histidine kinase [Streptococcus
           suis 89/1591]
          Length = 449

 Score =  312 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 89/404 (22%), Positives = 169/404 (41%), Gaps = 34/404 (8%)

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDT-RINKRKMEIEVMQLCSILEATSDGIAIINREG 472
            +         PE         +  +  R+    +E E  +L SIL   SDG+   +R G
Sbjct: 55  NYADVLDMRGSPEITDMANSLNDLSEVIRLTHDNLEQEKTRLTSILSYMSDGVIATDRIG 114

Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
            I+  N    K  G   +   +      L+ +    +   L +        T E +   +
Sbjct: 115 RIIMINDMAQKQLGLSSQKQEQYHLLEVLDLSDRYTLRDLLAQ--------TPEIVIDHT 166

Query: 533 TKEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
            + E+ L+LR     +   S       + +HD++E  +E+ +              +  F
Sbjct: 167 NENEEFLTLRANFATIRSESGLISGLVVVLHDMTEQAKEERE--------------RRLF 212

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
           ++ VSHE+RTPLT++  + E +     G L       +        N ++ ++ DLL +S
Sbjct: 213 VSNVSHELRTPLTSVKSYLEAL---DEGALTESVAPSFVKVSLDETNRMMRMITDLLSLS 269

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLY--ANEKRI-LIRTSFANNIPRILADLRSVK 705
           +I++    +  E ++    V+  ++       A+  ++  I   +  +   +  D   + 
Sbjct: 270 RIDNQVGQIDVELINFTAFVTFILNRFDQMKNADSDKVYTIVRDYQISPIWVEIDTDKMT 329

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           Q+  NIL+NAI ++P GG I  S   T + ++I+ V D G+G+   +L +    F ++  
Sbjct: 330 QVLDNILNNAIKYSPDGGTITFSMKTTDS-QLIVSVSDEGLGIPKADLPRIFDRFYRVDK 388

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           ++     GTGLGL +AK +V  + G  +  S    G+   I+ P
Sbjct: 389 ARSRAQGGTGLGLAIAKEIVKQHKGFIWAKSEYGHGSTFTIVLP 432


>gi|325107600|ref|YP_004268668.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
           5305]
 gi|324967868|gb|ADY58646.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
           5305]
          Length = 1074

 Score =  312 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 113/781 (14%), Positives = 234/781 (29%), Gaps = 74/781 (9%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG----DLLKRQNTW- 143
            DAHG +  ++    + +G    +     L DV  I++ D    +       L++  T  
Sbjct: 174 TDAHGRITLMNPVAEELLGRSRDECKNRPLVDVFQIVNEDTREPVENPVIKALRKNATVG 233

Query: 144 -YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
               T L   +G+   V I  +A PI+    +  G     +        +     +   +
Sbjct: 234 LTNHTLLIREDGS--EVSIADSAAPIFDAAGDAQGV--VLVFRDVTESRNAEIAIRDARQ 289

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQS-------PPPHLRMKNKVSSL------TEYYAH 249
              ++ +  +    V      + S            P       +  L            
Sbjct: 290 FAENIVDTIRQPLLVLNSDLRVRSANRSFYHAFHATPEKTEGELIYELGNGQWDIPLLRK 349

Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
             + +  +       +      +     + LN     Q    ++       +        
Sbjct: 350 LLNEILPQNTSFDDFDVDHDFPEIGRRHMKLNARRMHQEQDNIELILLAIEDMTDQYEAE 409

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
                 +       + +    I F +   G +   N     +      + I     +  +
Sbjct: 410 RARRAVESRFGSLVKNIRDHAI-FTIDPDGLITTWNHEAENILGMTEKEAIGTHFRI--I 466

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
               +       + +   R           +               I     +   E   
Sbjct: 467 FTKQEQEQGFPEQELQFARELGRAEDERWHVR----KNGQEFWAQGIVTPLRDDSGELFG 522

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
            + I  +  D +  +  ++++  QL  + +A +  +     E +I      + +      
Sbjct: 523 YSKILRDMTDRKRAEESLQLKSAQLQMLWDAAAVLLTAETPERMIQRIYERLQQHLDVDA 582

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ--------------TLEKITLGSTKE 535
             +        L  +    +      ++                    +++ +      +
Sbjct: 583 YFMFVADEEENLTLSATDGVTDEQINLVQQTAFSQTVCARAAAERRAISIDHVQQSQEPD 642

Query: 536 EKLLSL----------------------RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH 573
            KL+                             +  FS         I  +         
Sbjct: 643 TKLIRSLGFRAYSSSPMLYENQLIGTLSFATSTRDAFSPEELSLFQTICHYVTVAYVRLR 702

Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
             +   +    K +FLA ++HE+R PL  I    +V+     G        E    +   
Sbjct: 703 LVQELRETHRRKDEFLAMLAHELRNPLAPIRSGLDVLSMTDSG------QGEVVELLQAQ 756

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693
            N V+ +V+DL+D+S+I  GK+ L   PV L + + +++  V+  A ++   +  S    
Sbjct: 757 VNHVVRLVDDLMDVSRIMRGKVELRKAPVDLVQLIEQSLDAVRPVARQQNQELAVSLPKQ 816

Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753
              + AD   + Q   N+L+NA  +T  GG+I +  T       ++ V+D G+GM    L
Sbjct: 817 PVIVHADSVRIMQALENLLNNACKYTEEGGRIELRLTIQ-GVLAMVEVQDNGIGMDPEIL 875

Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFPLYD 812
                 F Q   S      G G+GL L K ++D + G    FS     G+   +  PL +
Sbjct: 876 PVVFDLFTQSKRSLDRSQGGLGIGLTLVKNLIDLHDGTVTAFSEGMGAGSTFTVRLPLAE 935

Query: 813 T 813
           +
Sbjct: 936 S 936



 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 32/290 (11%), Positives = 84/290 (28%), Gaps = 24/290 (8%)

Query: 319 ENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
              + + +   P    V +    +  A+ S+  + + K  + +         +   +   
Sbjct: 29  PLSSSDLLRSMPQALLVLNDDLRVVQASESYCDMFQTKHDETVGQMFFE---MGCGQWDV 85

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
               + +     D                 +    M             +        + 
Sbjct: 86  PELCEKLKDLLKDGQTFHDFRVEQEFPEIGQR--VMHLQAVRVRRSGEADQLVLIAVEDR 143

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
                 +R++  +   L   L++  D + + +  G I   N    +L G   ++   +P 
Sbjct: 144 TSEVEARRELSADREWLRVTLQSIGDAVIVTDAHGRITLMNPVAEELLGRSRDECKNRPL 203

Query: 498 TVFLE---QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL----PF 550
               +   ++T   + + + + L  +    L   TL   ++   +S+      +      
Sbjct: 204 VDVFQIVNEDTREPVENPVIKALRKNATVGLTNHTLLIREDGSEVSIADSAAPIFDAAGD 263

Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
           +    L   D++E +  +  +  A+            F   +   IR PL
Sbjct: 264 AQGVVLVFRDVTESRNAEIAIRDAR-----------QFAENIVDTIRQPL 302



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 59/192 (30%), Gaps = 5/192 (2%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + ID  G +   + E    +G    + IG     +      +      +L   +     
Sbjct: 431 IFTIDPDGLITTWNHEAENILGMTEKEAIGTHFRIIFTKQEQEQGFPEQELQFARELGRA 490

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +   W +              P+   + E      FG   + R   D +   + L  K +
Sbjct: 491 EDERWHVRKNGQEFWAQGIVTPLRDDSGEL-----FGYSKILRDMTDRKRAEESLQLKSA 545

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
            L  +    + +   +      Q     L+    V +   + A +++ L       +T E
Sbjct: 546 QLQMLWDAAAVLLTAETPERMIQRIYERLQQHLDVDAYFMFVADEEENLTLSATDGVTDE 605

Query: 266 ESSLPEQEDFHT 277
           + +L +Q  F  
Sbjct: 606 QINLVQQTAFSQ 617


>gi|298527922|ref|ZP_07015326.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298511574|gb|EFI35476.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 1044

 Score =  312 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 94/468 (20%), Positives = 177/468 (37%), Gaps = 47/468 (10%)

Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
             A      +                +              + + +  +  +     +  
Sbjct: 388 GQAVRQGDSYVGSICAVYQTDIIPSEDDLHVLRLIASAISAEENRKRAEEALRESEKKYR 447

Query: 456 SILEATSDGIAIIN------------REG----------------------IILSTNRAV 481
            + E +   +   +             +G                       ++  N+  
Sbjct: 448 QLFENSPISLWEQDFSEVKKRLDELKAQGIKDLEAYLKQRPELVWEMAGLVKVIDVNQGT 507

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE--EKLL 539
             L+    +D L    +    + + +     L  I S +   + E+  +    +  +  L
Sbjct: 508 LNLYKANFKDELLAGISRIFGKESYADFLQGLLLIASGETSFSFEREHVTLAGQNLKTQL 567

Query: 540 SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
              +I       S   + + DI+E    + +L  AK+ AE  +  KS+FLA +SHE+RTP
Sbjct: 568 YWSVIPGYEVDYSRVLVCIVDITELVNIQEELIQAKEQAEAANQAKSEFLANMSHELRTP 627

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
              I+G  +V++N       +    E+ N   +S      +++D+L++S IE+GKM +  
Sbjct: 628 FNGIMGMMQVLQNTDL----DDEQQEFVNLSIQSSERFARLLSDILELSNIEAGKMIICP 683

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHF 718
              SL E +     L     ++K + +     +N+P  ++ D   VKQ+   ++ NA+ F
Sbjct: 684 AHFSLQELLESLSGLFSAEGHQKGLALEFLMDSNVPAEVIGDATRVKQVMFTLVGNALKF 743

Query: 719 TPSGG-QIIIS-TTHTSNEEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           T  G  Q+ ++  + T   +V     V DTG+G+    L     PF Q+  S   + +G 
Sbjct: 744 TEQGSVQVQLTPLSATKGGDVRVQFSVFDTGIGIPEDRLSDLFNPFVQVDGSYTRKYQGA 803

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP--LYDTSHPHDCI 820
           GLGL L K +VD   G   + S   +GT + ++ P  L    H    I
Sbjct: 804 GLGLSLVKRLVDLMNGNISVESEVDRGTTVHVVLPFALPPVDHLESAI 851



 Score = 45.0 bits (105), Expect = 0.056,   Method: Composition-based stats.
 Identities = 26/226 (11%), Positives = 71/226 (31%), Gaps = 9/226 (3%)

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL--HTIQWNRENSLAMTFI 416
           ++        +L   KL D + +      ++D                  +E +  +   
Sbjct: 63  ELIRRQQPDLVLLDVKLGDESGLDICRQIKTDSDIADTHIMFLSGVKTSPQEQARGLRAG 122

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIIL 475
                 +              +     + +++    +L S       G  I + + G I 
Sbjct: 123 ADGYIVKPVNKEEFLARIEALMRVVHTEERLKESQHRLVSAQRIAKVGDFIWDVQTGNIT 182

Query: 476 STNRAVSKLFGYPV-EDILRKPF-TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
             + ++ +L  Y   + I  +         +    +  +L + L+   +           
Sbjct: 183 -WSDSLYELLQYDRSQRIDYETVKNHVHHPDDVQDIADWLKKSLASGEKDLPPMEYRVFR 241

Query: 534 KEEKLLSLR---IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKK 576
           K+ ++L +R   +I  +   +S    T+ D+++    + +LS   +
Sbjct: 242 KDGQILYVRTTGVIYYQNNKASRVFATVQDVTQQIMARVRLSEINE 287


>gi|239637304|ref|ZP_04678291.1| sensor protein YycG [Staphylococcus warneri L37603]
 gi|239597141|gb|EEQ79651.1| sensor protein YycG [Staphylococcus warneri L37603]
          Length = 608

 Score =  312 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 77/387 (19%), Positives = 171/387 (44%), Gaps = 27/387 (6%)

Query: 426 ENMPQNGIEPEDVDTRINKRKM--EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           + + +  +   ++  R+ + +   E E  +L S++   SDGI   +R G +   N    K
Sbjct: 235 DEIGELALAFNNLSKRVQEAQANTESEKRRLDSVITHMSDGILATDRRGRVRIANDMALK 294

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           + G   ED++       L       ++       S  L    E+  +        ++   
Sbjct: 295 MLGMAKEDLIGYYMLSVLNLEEEFSLDEIQENNDSFLLDINEEEGIIAR------VNFST 348

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
           I+++  F + Y   +HD++E +Q + +              + +F+A VSHE+RTPLT++
Sbjct: 349 IVQETGFVTGYIAVLHDVTEQQQVERE--------------RREFVANVSHELRTPLTSM 394

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
             + E ++   +    +    ++ +        ++ +VNDLL +SK+++    +  E V 
Sbjct: 395 NSYIEALEEGAW--KDDNLAPQFLSVTREETERMIRLVNDLLQLSKMDNESDQITKEIVD 452

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
            +  +++ I+  +     K                 D   + Q+  N+++NA+ ++    
Sbjct: 453 FNMFINKIIN--RHEMAAKDTTFVREIPQQTIFAEIDPDKMTQVFDNVITNAMKYSRGDK 510

Query: 724 QIIISTTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
           ++       +    + +R++D G+G+   +++K    F ++  ++  +  GTGLGL ++K
Sbjct: 511 RVEFHVKQNALYNRMTIRIKDNGIGIPINKVDKIFDRFYRVDKARTRKMGGTGLGLAISK 570

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFP 809
            +V+A+ G+ +  S   +GT I I  P
Sbjct: 571 EIVEAHNGRIWANSVEGQGTSIFITLP 597



 Score = 43.1 bits (100), Expect = 0.19,   Method: Composition-based stats.
 Identities = 17/164 (10%), Positives = 42/164 (25%), Gaps = 20/164 (12%)

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365
                 A  +  +      +             G +  AN   L +    + +D+     
Sbjct: 250 RVQEAQANTESEKRRLDSVITHMSDGILATDRRGRVRIANDMALKMLGM-AKEDLIGYYM 308

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
           LS L    + S +   +              +     +  N E  +           +  
Sbjct: 309 LSVLNLEEEFSLDEIQE--------------NNDSFLLDINEEEGIIARVNFSTIVQETG 354

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVM----QLCSILEATSDGI 465
                  +  +  + +  +R+    V     +L + L + +  I
Sbjct: 355 FVTGYIAVLHDVTEQQQVERERREFVANVSHELRTPLTSMNSYI 398


>gi|270307985|ref|YP_003330043.1| sensor histidine kinase [Dehalococcoides sp. VS]
 gi|270153877|gb|ACZ61715.1| sensor histidine kinase [Dehalococcoides sp. VS]
          Length = 852

 Score =  312 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 112/750 (14%), Positives = 238/750 (31%), Gaps = 49/750 (6%)

Query: 72  NTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN 131
             F  D     +         G L   ++   +  G +  ++ G        +   +  +
Sbjct: 141 PAFP-DKTLPALPLVMGFQPDGKLIFANQIFEEITGYFLNEIAGDNWKSCG-LFSSEAAD 198

Query: 132 HIGDLLKRQNTWYGKTTLWP---IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNR 188
            I  +LK   T   +          G   ++ +          NR  S            
Sbjct: 199 LINQMLKDTKTDSTQPVEIRLTLKNGQTCWLSVY-----SRIINRNTSSPYLQLSARDIT 253

Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA 248
           +      +            +      S         S      + R      ++T+   
Sbjct: 254 ICKRSEKILLLTRFAVERTTDAIFWTDSEGNFADVNQSACDSLGYKREDLLKLNVTDIDT 313

Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
              +     ++       + L  +         +   +     +Q +  E    ++    
Sbjct: 314 FITNRTDWIRHWEKLKNSTRLNFESTHRNKRGEEIPVEINANYMQYDGVEYN--IAVVRD 371

Query: 309 PSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
             L    ++    T  +V+       +V   G++  AN +      Y   +       + 
Sbjct: 372 IRLRKEAEKHLKFTSFSVEHSADSILWVNQKGHIIAANKAACQSLGYTHTE-------IR 424

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
            L          + K   L+   +  I  S        + +    +         +F   
Sbjct: 425 NLTVKDINPVCISEKWATLWGRLKNDIKFSVESVQFTKSGQQ---IPIEVMCNFLEFEGV 481

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
                +  +  + +    K+     +     +  SD + +++ +  IL  NRA +     
Sbjct: 482 DYCCAVLRDITERKKVDAKLLHAAEEWRITFDNISDIVFLLDNDFNILRANRAFTNTLNC 541

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
             +DIL K     L        +     + +    Q +        K        I    
Sbjct: 542 QPQDILNKKCYQVLHHKDCPKESCSKLIVSNTKKTQHINYFEENLEK---HFQETIDPIL 598

Query: 548 LPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
                      T+ D++E  +   +L    ++A        +  A ++HE+  PLT+++G
Sbjct: 599 NTDGQSLGTIHTIKDLTEHHKIAAQLMITDRLA-----SVGEMAAGLAHELNNPLTSVLG 653

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
           FSE+I+ +          +     I +      DI+ +LL  ++    +     + V ++
Sbjct: 654 FSELIQEKDL----PEDLMHDVQIISQEAQRAADIIRNLLTFAR----RHEQARDWVDMN 705

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF--TPSGG 723
           + + + +++         I + T+   N+P I AD   ++Q+ LNI+ NA  +  T + G
Sbjct: 706 QVIKKVLAICNYGQKVNNIQMVTNLDPNLPEIKADYFQMQQVLLNIVINA-EYFITQAHG 764

Query: 724 Q-IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
           +  I+ T+   +  + + + D G GM+   L+    PF          G+GTGLGL +  
Sbjct: 765 EGTIVITSCRLDNSIRISIEDDGPGMSENVLKHIFDPFFTTK----EVGKGTGLGLSIGH 820

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
            ++  + GK Y  S+  KG    I  P+  
Sbjct: 821 GIITQHGGKLYAESSEGKGATFFIELPINQ 850


>gi|23014385|ref|ZP_00054204.1| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 1193

 Score =  312 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 102/411 (24%), Positives = 175/411 (42%), Gaps = 15/411 (3%)

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRK-MEIEVMQLCSILEATSDGIAIIN-REGI 473
           IP +  ++  +   +  +  + +       + +     +L  IL+ +   +AI    +  
Sbjct: 361 IPGQGNDEITDMAAELAVFRDAMAKLQESSEALIESERRLRRILDTSPLALAISRVSDSA 420

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
           IL  N   S+L+  P    L            P+     +  +         E     S 
Sbjct: 421 ILLVNPRWSELYRVPKARALGMTVASCYS--DPANRLRLVELVKKRGFVGGFECRMRASD 478

Query: 534 KEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
             E    L     ++       ++  DI+  K+E+  L+ AKK+AE+ S  KS FLA +S
Sbjct: 479 GHEFWAMLSAAEIEMDGEPAVIVSSTDITRHKEEEAALAEAKKVAEEASQAKSLFLATMS 538

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HEIRTP+  ++  ++++++            E A  I  S   +L I+ND+LD SKIE+ 
Sbjct: 539 HEIRTPMNGVLTMAQLLEDMPLPA----EQREMARVIRDSATSLLTIINDILDFSKIEAD 594

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNIL 712
           K+ L    +SL E V     L+ + A EK I + T     +   ++ D   ++QI  N+ 
Sbjct: 595 KLQLELVELSLSELVEGVADLLTIRAQEKGISLITFIDPALTDMVIGDPIRLRQIITNLA 654

Query: 713 SNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
            NAI FT  G  + IS       E    +   + DTG+G+ + +  +  +PF Q   +  
Sbjct: 655 GNAIKFTDKG-YVRISVRALDPRERPLRLEFNITDTGIGLDSEQQARLFEPFMQADVTIS 713

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS-HPHD 818
            R  GTGLGL + + +V    G+  + S   +G+      PL      P +
Sbjct: 714 RRYGGTGLGLSICRRLVAMMDGEIGVRSNMGQGSTFWFQVPLEPADVAPEE 764


>gi|73662383|ref|YP_301164.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
 gi|72494898|dbj|BAE18219.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 562

 Score =  312 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 86/396 (21%), Positives = 180/396 (45%), Gaps = 29/396 (7%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEI--EVMQLCSILEATSDGIAIINREGIIL 475
                   +   +  +   ++  R+ +   +   +  +L + +E     I +I++ G I+
Sbjct: 189 VRVPESNVKETRELFVTTNELARRLQRLNHKQKLQSNRLKTTVENIPSSILMIDKYGEIV 248

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
             N++   +F  P + +  K +  F++      +   +TE   ++     +         
Sbjct: 249 VANKSFYNVF-TPEKAVEHKSYVDFVD----LTLQKLITEAFKVEKPIYDQIELTIDQVH 303

Query: 536 EKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
           +K      +              + +HDI+  K+ +              + + +F+A V
Sbjct: 304 QKYFDTSCVPILSKTKKNLYGMVIVLHDITNLKKLE--------------NLRREFVANV 349

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHE++TP+T+I GF+E + +            E+   I +  + +  +V DLLD+S +E 
Sbjct: 350 SHELKTPITSIKGFAETLLDG--AKNDEQTLNEFLKIISKESDRIETLVFDLLDLSHVE- 406

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712
            +  +  E VSL E     I  +Q  A EK+I I      +I  I A+   V Q+ALN+L
Sbjct: 407 QQTEIVTEYVSLSEIAESTIKNMQNIAEEKQITIVNEIKPDI-VIDANKDKVSQVALNLL 465

Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           SNA+ ++ +  ++I+     +N+ ++  V+D G+G++  + +   + F ++  ++     
Sbjct: 466 SNAVSYSKASSEVIVRVYKDANKRIM-EVQDFGIGISAEDQQHIFERFYRVDKARSRDSG 524

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           GTGLGL + K +++A+ G+  +FS P +G+   + F
Sbjct: 525 GTGLGLSITKHIMEAHNGRINVFSRPNEGSTFRVTF 560


>gi|281355046|ref|ZP_06241540.1| PAS/PAC sensor hybrid histidine kinase [Victivallis vadensis ATCC
            BAA-548]
 gi|281317926|gb|EFB01946.1| PAS/PAC sensor hybrid histidine kinase [Victivallis vadensis ATCC
            BAA-548]
          Length = 1559

 Score =  312 bits (800), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 119/692 (17%), Positives = 241/692 (34%), Gaps = 73/692 (10%)

Query: 181  FGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFS-----QQSPPPHLR 235
            FGI+             +  D     L +    + +V     D               + 
Sbjct: 713  FGIIREITSGRRNELAYQNTDLLLRTLVDNLPAYVAVMDVSNDFRYIIWNRAVEELSGIP 772

Query: 236  MKNKVSSLTEYYAHKDDVLKTEKYPLLTS-EESSLPEQEDFHTINLNQYTKKQYFGTLQN 294
                +         + D L + +  L  +    +L  QE++   N      K +F  ++ 
Sbjct: 773  TIRAIGRNDAELEREPDRLFSNRQMLEQACRAGTLALQEEYRCPNGEIRILKTFFSLIRR 832

Query: 295  NSKESFEYLSHRNHPSLSAYFDEGENLTPET-------------VDKC-------PIPFF 334
                        +        +E   L  E              +++         +   
Sbjct: 833  TQDTPLLLRLSVDMTEERRLDEERRRLNEELKIYLEQQEVINNCLERLLLQAGSSSVRAI 892

Query: 335  VYSHGNLFYANPSF--------------LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
            +   G    A+  +                 +  +           S    +    + NA
Sbjct: 893  LEIIGRRTGADRCYLCEYDEEGNPGSVTCDWSHKEVAAVPPQLHNFSADCQSGWREEFNA 952

Query: 381  IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED--- 437
             + +     + +    + R        +   ++         +    +  + I  E    
Sbjct: 953  QRLIYSSNLNLSDQPETLREIRKTLLDQGVQSIMLSGVRFQRRLWGFIGFDFIRKECRFS 1012

Query: 438  -----------------VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
                             ++   NK+++     +   I +  +  I + +    ++  NRA
Sbjct: 1013 NIEKNIITAAAHIIEIYLEHESNKQQLRKSEYERQQIFDNINTPILLFDPNLNLIRANRA 1072

Query: 481  VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
                +   VE+    P      +         +   +     Q  +    G         
Sbjct: 1073 AYSAYQ-AVENSSDLPCYRIFCKQPQVPDYCPVRRTIETLQPQQRQVCVAGHDYMILTKP 1131

Query: 541  LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
            L     K  +         +I++  Q + KL+   + A+     KS FLA +SHE+RTPL
Sbjct: 1132 LFDSNGKFTY---VLENAVEITQLNQRQKKLTETMEAAQAADRAKSYFLATMSHELRTPL 1188

Query: 601  TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
             A+IGFSE++++   GP+ +         I+ +G  +L+++ND+LD+SK+E+GKM++  E
Sbjct: 1189 NAVIGFSELLQS---GPMPDQEQQNALRAINVAGATLLELINDILDLSKLEAGKMDIIPE 1245

Query: 661  PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720
             +   E +    ++    A  +++ +  +    +P +  D + ++Q+ +N+L NA  FT 
Sbjct: 1246 LLDPQEFLQTVSAIFTHTARTRKLSLTVTVPPAMPHLKFDRKRLRQVLVNLLGNAFKFTE 1305

Query: 721  SGGQII---ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
            +GG ++     T +     +IL+V DTG+GM+   + +   PF Q         EGTGLG
Sbjct: 1306 TGGVLLEAAFETVNDHFGTLILKVSDTGIGMSPETVRQLFDPFRQ---HHTRDYEGTGLG 1362

Query: 778  LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            L +++ +V    G   + S P  G+   I+ P
Sbjct: 1363 LAISQRLVARMGGSIEVTSEPEHGSTFRIVLP 1394



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 27/277 (9%), Positives = 74/277 (26%), Gaps = 25/277 (9%)

Query: 315 FDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
                          P+   V      ++Y           +S ++ +  G  +     P
Sbjct: 358 SRLKSRTEQAVFRALPVRVVVADETDRIYYF----------RSGENFDQLGVGN----DP 403

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
                  +  +              +    +       A+      +    P  +  +  
Sbjct: 404 HEEFRPELVELFRQTLREVLETGEIQTREYELQGRRHKAIFRRLPAELFGVPTVLRVSSD 463

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
             +     + +R+ +    QL   L++  DG+   +    +   N   + L GY  ++++
Sbjct: 464 VHDLY---LARREAQEAEEQLRITLQSIGDGVIATDCSETVTMVNPVAASLTGYSPDELV 520

Query: 494 RKPFTVFLEQNT---PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
            +         +      ++  ++  L+      L   T    K+     +      +  
Sbjct: 521 GRKLDDVFHIISYLNRKRVSSPVSRALASGKIVELANHTDLIAKDGTCRHIADSAAPIRD 580

Query: 551 SSCY----SLTMHDISEWKQEKNKLSHAKKIAEKESS 583
            S       L   D++E  + ++ L     +      
Sbjct: 581 HSGRITGAVLVFRDVTEEYRRRDMLQMQNSLLNTALQ 617



 Score = 78.1 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 48/406 (11%), Positives = 106/406 (26%), Gaps = 41/406 (10%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL-HIDPNNH---IGDLLKRQNTW- 143
            D    +  ++       G    +++G +L DV  I+ +++       +   L       
Sbjct: 495 TDCSETVTMVNPVAASLTGYSPDELVGRKLDDVFHIISYLNRKRVSSPVSRALASGKIVE 554

Query: 144 -YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRV---DNDPRALGKR 199
               T L   +GT  +  I  +A PI   +   +G     +           D   +   
Sbjct: 555 LANHTDLIAKDGTCRH--IADSAAPIRDHSGRITGA--VLVFRDVTEEYRRRDMLQMQNS 610

Query: 200 LDKKFSHLHEIK-KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
           L      + E+           K    + +  P    +   +       A          
Sbjct: 611 LLNTALQIAEMTYFHCGPDGNPKGTFQTGRFWPRENGVP--LLPERWLTAEYVSGFYQGW 668

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP----SLSAY 314
             LL+ E   +  +         +Y + +    L  + K   EY                
Sbjct: 669 ERLLSGETDEIHLEYSSDYSGKRRYFEMRVKSELLPDGKAEREYFGIIREITSGRRNELA 728

Query: 315 FDEGENLTPETVDKCPIPFFVYS---HGNLFYANPSFLLLTKYKSVDDIEIAGG-----L 366
           +   + L    VD  P    V            N +   L+   ++  I           
Sbjct: 729 YQNTDLLLRTLVDNLPAYVAVMDVSNDFRYIIWNRAVEELSGIPTIRAIGRNDAELEREP 788

Query: 367 STLLDAPKLSDNN-----AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF--- 418
             L    ++ +                 +            I+  ++  L +        
Sbjct: 789 DRLFSNRQMLEQACRAGTLALQEEYRCPNGEIRILKTFFSLIRRTQDTPLLLRLSVDMTE 848

Query: 419 -----EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459
                E+  +  E +     + E ++  + +  ++     + +ILE
Sbjct: 849 ERRLDEERRRLNEELKIYLEQQEVINNCLERLLLQAGSSSVRAILE 894



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 55/540 (10%), Positives = 133/540 (24%), Gaps = 54/540 (10%)

Query: 115 GMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNRE 174
           G     +   +  DP+      L     +          G       +L      +  R 
Sbjct: 391 GENFDQLG--VGNDPHEEFRPEL--VELFRQTLREVLETGEIQTREYELQGRRHKAIFRR 446

Query: 175 FSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEK--------EKYDIFS 226
                 FG+  V RV +D   L     +      +++    S+          E   + +
Sbjct: 447 LP-AELFGVPTVLRVSSDVHDLYLARREAQEAEEQLRITLQSIGDGVIATDCSETVTMVN 505

Query: 227 QQSPPPHLRMKNKVSSLTE-------YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTIN 279
             +        +++             Y ++  V       L + +   L    D    +
Sbjct: 506 PVAASLTGYSPDELVGRKLDDVFHIISYLNRKRVSSPVSRALASGKIVELANHTDLIAKD 565

Query: 280 LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD-KCPIPFFVY-- 336
                       ++++S      +      +      +   +    ++    I    Y  
Sbjct: 566 GTCRHIADSAAPIRDHSGRITGAVLVFRDVTEEYRRRDMLQMQNSLLNTALQIAEMTYFH 625

Query: 337 -SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIA 395
                              ++   +     L+    +                       
Sbjct: 626 CGPDGNPKGTFQTGRFWPRENGVPLLPERWLTAEYVSGFYQG-------WERLLSGETDE 678

Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
                 +    +     M        +   E     GI  E    R N+   +   + L 
Sbjct: 679 IHLEYSSDYSGKRRYFEMRVKSELLPDGKAE-REYFGIIREITSGRRNELAYQNTDLLLR 737

Query: 456 SILEATSDGIAIIN--REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
           ++++     +A+++   +   +  NRAV +L G P    + +       +      N  +
Sbjct: 738 TLVDNLPAYVAVMDVSNDFRYIIWNRAVEELSGIPTIRAIGRNDAELEREPDRLFSNRQM 797

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM-HDISEWKQEKNKLS 572
            E         L++       E ++L     + +    +   L +  D++E ++   +  
Sbjct: 798 LEQACRAGTLALQEEYRCPNGEIRILKTFFSLIRRTQDTPLLLRLSVDMTEERRLDEERR 857

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
              +  +     +                 I    E +  Q     G+         I R
Sbjct: 858 RLNEELKIYLEQQE---------------VINNCLERLLLQ----AGSSSVRAILEIIGR 898


>gi|288869902|ref|ZP_06112218.2| putative response regulator receiver domain protein [Clostridium
           hathewayi DSM 13479]
 gi|288869200|gb|EFD01499.1| putative response regulator receiver domain protein [Clostridium
           hathewayi DSM 13479]
          Length = 950

 Score =  312 bits (800), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 102/585 (17%), Positives = 227/585 (38%), Gaps = 44/585 (7%)

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN-SKESFEYLS 304
            +  + D++           ++                  + +    +   S     +++
Sbjct: 101 QHPGEFDIISQALSAAAEHGQNLFSADCRIPVKTGTFLHVRIHGTITEETTSGCPTVFMT 160

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG--NLFYANPSFLLLTKYKSVDDIEI 362
             +   L    ++        +D+     ++       L Y N +     +      +  
Sbjct: 161 LTDISDLVDQAEQKVQYFEWMMDEYIGNVYISDMDSYELLYINQTAADTLQCTKKAPLGH 220

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ-WNRENSLAMTFIPFEKA 421
                                ++  R++      ++RL T + +  E    +    F   
Sbjct: 221 K-----------------CYEIIQGRTEPCPFCTNSRLRTDEFYEWEFDNPLLNRTFMIK 263

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG--IILSTNR 479
           N+  +            D    + K+  +  +  +++     G+A ++      I+    
Sbjct: 264 NRIIDWNGHRARLELSHDMFSTEYKLAKKDRERDALIRTIPGGLARLDARDCSTIMWYGA 323

Query: 480 AVSKLFGYPVEDI---LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
               + GY  E     L +  T  +  +  S +   L +I         E   +    + 
Sbjct: 324 NFLDIIGYTEEQFENELGRQCTY-IHPDDLSRLQLLLEQIRITGESTAFESRIITRDGQV 382

Query: 537 KLLSLRIIIKKLPFS----SCYSLTMHDIS----EWKQEKNKLSHAKKIAEKESSHKSDF 588
           K+L++         S      +     D++    E +++K  L  A + A   +S K++F
Sbjct: 383 KILTMTFCYASGENSWDGIPSFYSIGIDLTKDRAEQERQKKALEEAYQAARVANSAKTNF 442

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
           L+ +SH+IRTP+ AI+G + + +     P    +  +  + I+ S   +L +VN++LD+S
Sbjct: 443 LSSMSHDIRTPMNAIMGMAAIAQANLSSP---EKIRDCLSKINVSSRHLLSLVNEVLDMS 499

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN-NIPRILADLRSVKQI 707
           +IESGK++L  E V L E +    ++ +   +EK +  + S +      ++ D   ++Q+
Sbjct: 500 RIESGKIDLTPEEVKLPELIENVFAMCKPLISEKDLQFQISASKVRHETVITDGDRLQQV 559

Query: 708 ALNILSNAIHFTPSGGQIIISTTH-----TSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
            +N+L+NA+ +TP+GG+I +S        +   +    + DTG+GM+   L    +PF +
Sbjct: 560 LINLLTNAVKYTPNGGRISLSIKEIPSLSSQKAQFEFIITDTGIGMSEEFLPHIFEPFSR 619

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
             +S+  + +GTGLG+ + + +V    G   + S   +G+   + 
Sbjct: 620 AEDSRISKIQGTGLGMAITENIVRMMNGSIEVTSRLGEGSQFTVT 664


>gi|307943284|ref|ZP_07658629.1| sensory box histidine kinase/response regulator [Roseibium sp.
           TrichSKD4]
 gi|307774080|gb|EFO33296.1| sensory box histidine kinase/response regulator [Roseibium sp.
           TrichSKD4]
          Length = 805

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 120/650 (18%), Positives = 230/650 (35%), Gaps = 38/650 (5%)

Query: 164 AALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYD 223
           +   I   +R   G R    V    + +        L    S  H +     ++ +E   
Sbjct: 26  SGTEIVRVDRTQYGLR---TVRPEDLQDKGGEPYFALA-MKSRGHRVAFSDVTLNRENGK 81

Query: 224 IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY 283
           I     P     + + +           +  K       ++     P + D   +N    
Sbjct: 82  IEENAKPVLRGAIDDPLGDRKVILIVNVNYEKILLAAFQSA-----PPRHDMIAVNARGD 136

Query: 284 TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY 343
                     +  K      +  + P L A + +                 V  +  + Y
Sbjct: 137 FMHYQVKGAMSGQKLFLANAAQSDLPKLVAAYTQSSGAEG----------LVELNEQIGY 186

Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403
              S    ++  +   +      S             ++  M        IA  A    I
Sbjct: 187 FVRSSAGFSQDSTKIGLIQYLPKSEFFAESSAFFYRVLEIGMFLLVPILLIAVYAGRKFI 246

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
           +  R+ +  +  +P ++          + +       R   + +     Q  +ILE   +
Sbjct: 247 EPLRKLANQVQALPEKRLVSGLPEKRDDEVGYLASAIRKRAQDLLEAEAQSSTILEKVIE 306

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL-- 521
           GI +I+ +G++   N    K+F Y  E+++ K   + +      V + ++    + D+  
Sbjct: 307 GIILIDDKGVVEKYNAGSQKIFEYTPEEVIGKNVAMLMPTELADVHDSFVHRANTNDVMP 366

Query: 522 --RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579
                 E   L     E  + L +   ++     Y   + D+S  ++             
Sbjct: 367 EFHSFREFEALDKYGNEVAIELSVNSLQINGQRKYIGVVRDVSHRQEI------------ 414

Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639
                +++F+  VSHE+RTPLT+I G   +      G     +  +  +   ++   +  
Sbjct: 415 --DRMRNEFIYTVSHELRTPLTSIRGSLALANTLAAGTEIPEKVSKMMDLALKNSERLNL 472

Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA 699
           +VND+LD+ K+ SGK       V L+EAV E+++L Q YA E+ + ++ +       +  
Sbjct: 473 LVNDILDLEKLRSGKTTFDLSEVDLNEAVEESVALNQHYALERNVKLKATPLEQPVVVKV 532

Query: 700 DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKP 759
           D   ++Q+  N++SNA  F+   G + +       E   L V D G+G+ +        P
Sbjct: 533 DKARLQQVLSNLISNAAKFSHENGTVDVRVGLE-GEAAKLYVIDAGMGIPDEFKAYIFDP 591

Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           F Q   S++ +  GTGLGL + K +V+   G     S    GT   I FP
Sbjct: 592 FSQADGSERRKKGGTGLGLNITKRLVEGIDGGINFTSEEGVGTTFVIEFP 641


>gi|254414687|ref|ZP_05028452.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196178535|gb|EDX73534.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 637

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 88/411 (21%), Positives = 176/411 (42%), Gaps = 34/411 (8%)

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINK--RKMEIEVMQLCSILEATSDGIAIINREGI 473
           I      +  E +       E ++    +   ++  E  +L +++   +DG  +++    
Sbjct: 213 IDLPLGGELGELISSFNEMAERLERYEEQNIEELTAEKAKLETLVSTIADGAVLLDTTLN 272

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE-KITLGS 532
           ++  N    ++FG+    ++ +     L       +   L +I   +     E +    +
Sbjct: 273 VILVNPTARRIFGWDGHTLVGENVLHHLPTAVTLELTRPLYQIAGGETAAEREGEEFRIT 332

Query: 533 TKEEKLLSLRIIIKKLPFS-----SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
             E  L ++RI++ ++           ++T+ DI+                 + +  KS 
Sbjct: 333 LTEPTLRTVRILLTRVFDQYRESIKGIAMTVQDITR--------------EVELNEAKSQ 378

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           F++ VSHE+RTPL  I  F E + ++    L      E+    +R  + +  +VND+LD+
Sbjct: 379 FISNVSHELRTPLFNIKSFIETL-HEYGEDLSEVERQEFLETANRETDRLTRLVNDVLDL 437

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707
           S++E+     HFEPV +   V + +   QL A +K I +    +  +P +L     + Q+
Sbjct: 438 SRLETSCRIYHFEPVDIAGPVEQTLRTYQLNARDKGIELVQEISPKLPPVLGHYDLLLQV 497

Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNE----------EVILRVRDTGVGMTNYELEKAM 757
             N++ NA+ FT SGG+++I                  +V + + DTG+G+   + E   
Sbjct: 498 FDNLVGNALKFTESGGRVVIRAYPLEANPNPNHPDEIPQVRVEISDTGIGIDWEDQENIF 557

Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
             F ++ N +    EGTGLGL + + +V+ +  + Y+ S    GT      
Sbjct: 558 DRFFRVEN-RVHTLEGTGLGLSIVRNIVEKHHSRVYLVSEVGIGTTFWFNL 607


>gi|187922640|ref|YP_001894282.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia phytofirmans
            PsJN]
 gi|187713834|gb|ACD15058.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia phytofirmans
            PsJN]
          Length = 1480

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 112/590 (18%), Positives = 209/590 (35%), Gaps = 33/590 (5%)

Query: 242  SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301
            ++    +    ++      +  +E+  + ++                   L         
Sbjct: 478  AVRPDLSPLAGLIDRALLAMPPAEKQRIRQKWVTGNAPAAGTWSVTAVRLLPVLIGVCVV 537

Query: 302  YL-----------SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFL 349
             L             R         +   N     +   P P       G     N ++ 
Sbjct: 538  LLITLRAYLLLQREVRLRKKTERELELQLNFQETLMKTVPYPLVAKDLDGRYLAVNEAYE 597

Query: 350  LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
                      +    G ++L        N+ I   M          A   L   +     
Sbjct: 598  QACGLSRDAVV----GRTSLQVQTWGEANSRILDEMTREMLNGGETAQVELQFERGAGNV 653

Query: 410  SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469
               + +          +     G   +  D R  + +      +L  +  +    +  + 
Sbjct: 654  RHGLFWTRIC-RGSDGQPACVLGTMVDITDIRRAEMRARETERRLFDVTRSLPAVVFQLR 712

Query: 470  R--EGIIL--STNRAVSKLFGY--PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
            R  +G       +     L G    ++++  +     + +   + +   L      +   
Sbjct: 713  RTADGAYTFPYISGDARHLLGGRGSLQNVSDQVDFQRVCEEDRAFVLAELERSAHSETPV 772

Query: 524  TLEKITLGSTKEEKLLSLRIIIKKLPFSSC-YSLTMHDISEWKQEKNKLSHAKKIAEKES 582
             +E    G  ++ K     ++ ++    S  +S    D S      ++L+ A+ +AE  S
Sbjct: 773  NMEFRFAG-DQDIKWARAELVPRRESDGSVVWSGYWVDASLEHARSDELARARDLAEAAS 831

Query: 583  SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
              K DF A +SHEIRTP+  ++G  EV++        N    E    I  S   +L I++
Sbjct: 832  RAKDDFFAMMSHEIRTPMNGVLGLVEVLERTPL----NADQGEMLGMIHESAGALLQILD 887

Query: 643  DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADL 701
            DLLD SKIE+G++ +  E + L E V  A+ L+   A+EK + +R     ++   +  D 
Sbjct: 888  DLLDYSKIEAGRLTIEAESIDLRELVDNAVGLLAGRAHEKGLKVRVDIGPDVAATLRGDS 947

Query: 702  RSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNE--EVILRVRDTGVGMTNYELEKAMK 758
              ++QI  N+L NAI FTP G   + +S     +    + + V DTG+G+      K  +
Sbjct: 948  VRLRQILFNLLGNAIKFTPQGEVDVCVSVVAEGDGIQTLEMVVEDTGIGIAPEVQAKLFE 1007

Query: 759  PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            PF Q  +S   R  GTGLGL + + ++D   G   + S P  GT + +  
Sbjct: 1008 PFVQAESSTTRRFGGTGLGLTICRKLIDLMNGSLTLRSEPGSGTCMTVRL 1057



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 48/385 (12%), Positives = 98/385 (25%), Gaps = 30/385 (7%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT-- 147
           D  G    ++E   +  G     ++G     V      + N+ I D + R+    G+T  
Sbjct: 584 DLDGRYLAVNEAYEQACGLSRDAVVGRTSLQVQT--WGEANSRILDEMTREMLNGGETAQ 641

Query: 148 TLWPIEGTNLYVPIDLAALPI-YSRNREFSGFRG--FGIVHVNRVDNDPRALGKRLDKKF 204
                E     V   L    I    + + +   G    I  + R +   R   +RL    
Sbjct: 642 VELQFERGAGNVRHGLFWTRICRGSDGQPACVLGTMVDITDIRRAEMRARETERRLFDVT 701

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPP----PHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
             L  +           Y                     VS   ++    ++        
Sbjct: 702 RSLPAVVFQLRRTADGAYTFPYISGDARHLLGGRGSLQNVSDQVDFQRVCEEDRAFVLAE 761

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
           L  S  S  P   +F           +     +  S  S  +  +    SL     +   
Sbjct: 762 LERSAHSETPVNMEFRFAGDQDIKWARAELVPRRESDGSVVWSGYWVDASLEHARSDELA 821

Query: 321 LTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
              +  +                A   F  +  ++    +    GL  +L+   L+ +  
Sbjct: 822 RARDLAEAAS------------RAKDDFFAMMSHEIRTPMNGVLGLVEVLERTPLNADQG 869

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
               M++ S    +     L          L +     +        +        +   
Sbjct: 870 EMLGMIHESAGALLQILDDLLDYSKIEAGRLTIEAESIDLRELVDNAVGLLAGRAHEKGL 929

Query: 441 RIN-------KRKMEIEVMQLCSIL 458
           ++           +  + ++L  IL
Sbjct: 930 KVRVDIGPDVAATLRGDSVRLRQIL 954


>gi|229094576|ref|ZP_04225643.1| hypothetical protein bcere0021_52790 [Bacillus cereus Rock3-42]
 gi|229187694|ref|ZP_04314830.1| hypothetical protein bcere0004_52250 [Bacillus cereus BGSC 6E1]
 gi|228595762|gb|EEK53446.1| hypothetical protein bcere0004_52250 [Bacillus cereus BGSC 6E1]
 gi|228688823|gb|EEL42654.1| hypothetical protein bcere0021_52790 [Bacillus cereus Rock3-42]
          Length = 588

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 84/372 (22%), Positives = 158/372 (42%), Gaps = 25/372 (6%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +  +   E E  +L S+L   +DG+   +R+G I+  N    K+     E  L +     
Sbjct: 233 QQARSSTESERRKLSSVLSHMTDGVIATDRKGDIILLNDPAEKMLNVSRETALDQSVLEV 292

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
           L       ++H   E  S+ L  +                  +I K+   ++     ++D
Sbjct: 293 LGIQEEFTLDHLYEEPDSVLLDFSTRNEPYILRAS-----FSVIQKETGKANGLIAVLYD 347

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           ++                E+    + +F+A VSHE+RTPLT +  + E + +  +     
Sbjct: 348 VT--------------EQERIERERREFVANVSHELRTPLTTMRSYLEALTDGAWQDPNI 393

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
                +          ++ +VN LL +SK++S +  L  E V   +  +  I   +  + 
Sbjct: 394 APQ--FLTVTQEETERMIRLVNALLQLSKLDSTEHRLMKEWVDFTDFFNNIIDRFE-MSK 450

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV-IL 739
           E+ +  + SF+     I  D   + Q+  NI+SNA+ ++P GG +          E+  +
Sbjct: 451 EQNVSFKRSFSKKSRFIDMDTDKITQVLYNIISNALKYSPEGGTVT--YRLRDRGELLEI 508

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V D G+G+    ++K  + F ++  ++  +  GTGLGL +AK M++A+ G  +  S   
Sbjct: 509 SVSDQGMGIPKENVDKIFERFYRVDKARSRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEG 568

Query: 800 KGTLIEIIFPLY 811
           KGT I    P+ 
Sbjct: 569 KGTTIYFTLPMA 580


>gi|237807392|ref|YP_002891832.1| aerobic respiration control sensor protein ArcB [Tolumonas auensis
           DSM 9187]
 gi|237499653|gb|ACQ92246.1| multi-sensor hybrid histidine kinase [Tolumonas auensis DSM 9187]
          Length = 782

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 90/398 (22%), Positives = 174/398 (43%), Gaps = 23/398 (5%)

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
            +  +       + +E E +     ++++E + + L S L+++ D +   N     LS N
Sbjct: 122 TRRAEAARLRVLSELEAEAIQREKAQKELEEQSVLLRSFLDSSPDLVFYRNEREEFLSCN 181

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
           +A+  + G    +I+ +      E      +     ++   +   T          + + 
Sbjct: 182 KALETMLGRGRNEIIGRTPYGLYEPQMAEQIISRDRDVFETNQPVTY--ELWFPYPDGRR 239

Query: 539 LSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
               +       ++           DI+E K+ +++L       EK S  K+ F++ +SH
Sbjct: 240 ACFEMRQVPFFAANGERLGLVGFGRDITEHKRYQDEL-------EKASQDKTTFISTISH 292

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           E+RTPL  ++G S ++ +       N    +Y N I  S   + +I ND++D+ KIE  +
Sbjct: 293 ELRTPLNGVVGLSHILLDTPL----NDLQRQYLNTIHLSAVTLGNIFNDIIDLDKIERRR 348

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILS 713
           + +    + L   +S+  +L  L    K + +      ++P  I+AD   ++QI  N+LS
Sbjct: 349 LKIANSKIDLRLLLSDLQTLSTLMVEAKGLYLHFDIDGDVPHWIVADGTRLRQILWNVLS 408

Query: 714 NAIHFTPSGGQ---IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           NA+ FT  GG    + +S +  +   +   + DTG+G+  +E E     + Q+P     R
Sbjct: 409 NAVKFTAEGGITFGVQVSPSAENKVHLRFDIEDTGIGIPEHEQENIFAMYYQVPG--TRR 466

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
             GTG+GL + K +VDA  G  ++ S    G+   I  
Sbjct: 467 AVGTGIGLAITKQLVDAMDGMIHVDSELGHGSCFTIEL 504



 Score = 45.4 bits (106), Expect = 0.039,   Method: Composition-based stats.
 Identities = 22/224 (9%), Positives = 52/224 (23%), Gaps = 23/224 (10%)

Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR----- 306
           D L+  +  L          +E    +NL   +           ++ +            
Sbjct: 78  DELEDSRRRLTDMVHKLQVMRERDQALNLRLRSNISQLNNQIEETRRAEAARLRVLSELE 137

Query: 307 ----NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN--LFYANPSFLLLTKYKSVDDI 360
                        +E   L    +D  P   F Y +        N +   +      + I
Sbjct: 138 AEAIQREKAQKELEEQSVLLRSFLDSSPDLVF-YRNEREEFLSCNKALETMLGRGRNEII 196

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSD--RTCIAASARLHTIQWNRENSLAMTFIPF 418
                         L +    + ++    D   T    +  L     +   +        
Sbjct: 197 GR--------TPYGLYEPQMAEQIISRDRDVFETNQPVTYELWFPYPDGRRA-CFEMRQV 247

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
                  E +   G   +  + +  + ++E       + +   S
Sbjct: 248 PFFAANGERLGLVGFGRDITEHKRYQDELEKASQDKTTFISTIS 291



 Score = 38.9 bits (89), Expect = 4.1,   Method: Composition-based stats.
 Identities = 16/111 (14%), Positives = 34/111 (30%), Gaps = 6/111 (5%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPIE 153
               ++ L   +G    ++IG     + +    +   +   D+ +       +      +
Sbjct: 177 FLSCNKALETMLGRGRNEIIGRTPYGLYEPQMAEQIISRDRDVFETNQPVTYELWFPYPD 236

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND-PRALGKRLDKK 203
           G       ++  +P ++ N E  G  GFG              L K    K
Sbjct: 237 GR--RACFEMRQVPFFAANGERLGLVGFG--RDITEHKRYQDELEKASQDK 283


>gi|332527370|ref|ZP_08403426.1| two-component hybrid sensor and regulator [Rubrivivax
           benzoatilyticus JA2]
 gi|332111779|gb|EGJ11759.1| two-component hybrid sensor and regulator [Rubrivivax
           benzoatilyticus JA2]
          Length = 1201

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 113/617 (18%), Positives = 211/617 (34%), Gaps = 29/617 (4%)

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
           KF    E K+       + +    +        +   V++++         +     PL 
Sbjct: 180 KFGAEREFKRAFQLYTGQFHRAVRKGDSATLALVDRGVAAISPEEDE-ALRIAWFGEPLR 238

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS-LSAYFDEGENL 321
            +             + L            +  +  + E            A  +     
Sbjct: 239 GASYVDQLWWIAPGVLALGGALLLWNVSLRRRVAGRTAELQDALGELRNAHAVAESVRAN 298

Query: 322 TPETVDKCPIPFFVYSH-GNL--FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
              T+   P   F +   G     Y+  S   L    S + I    G       P  +  
Sbjct: 299 LAATLSAIPDLLFEFDAQGRYLDVYSGGSSTRLLYRDSDEIIGRRVGE----VLPADAAA 354

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
             ++ + +   D      +  L          L+ T            ++ +     E +
Sbjct: 355 IVLESISVALRDGADYGRTMELDIGGQPHWFELSTTRKATGHVLTLSRDITRRRAAEEAL 414

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
                +  +     +L ++ +A    +  +  E ++ S+N A  +LFG    ++      
Sbjct: 415 LQAREREVIAERDRRLRALSDAAPLPMLYLRGE-VVESSNVAFRELFGVDEHELGSFDAW 473

Query: 499 VFLEQNTPSVM----NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554
             L     +        +   +                 +    L L ++          
Sbjct: 474 WRLVCPDDAAREAMQRAWREAVERAAREGGRVHEIECRVRVRGGLDLVLLAGGQQLGDGM 533

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
            +T+ DI+  K+ +     A        +        +SHEIRTP+ AIIG + +  N  
Sbjct: 534 VVTLADITPLKRAQELAEAASAAKSAFLA-------TMSHEIRTPMNAIIGMTALALNTE 586

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
             P    R  +Y   I  +G  +L  +ND+LD SKIE+GK+ +      L+E V E    
Sbjct: 587 LSP----RQRDYLQKIQSAGRSLLATINDILDFSKIEAGKLEIERREFDLEEVVGEVCDQ 642

Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHT 732
           +   A  K +         +PR ++ D   + Q+ LN+  NA+ FT  GG  + +     
Sbjct: 643 LAARAAAKGLEFVVDLGPEVPRRLVGDPLRLGQVLLNLCGNAVKFTEQGGVCVRLRVQRQ 702

Query: 733 SNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
           +  +V+LR  V+D+G+G+   +  +  + F Q  +S   R  GTGLGL +AK +V+   G
Sbjct: 703 TEGQVLLRCAVQDSGIGLGEEQRSRLFQSFQQADSSITRRYGGTGLGLVIAKRLVELQGG 762

Query: 791 KFYIFSTPAKGTLIEII 807
           +  + S P  G+     
Sbjct: 763 EIGVDSQPGVGSTFWFT 779



 Score = 42.3 bits (98), Expect = 0.37,   Method: Composition-based stats.
 Identities = 26/228 (11%), Positives = 60/228 (26%), Gaps = 12/228 (5%)

Query: 85  FTWNIDAHGYL--KEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNT 142
             +  DA G            + +   + ++IG R+ +V              +  R   
Sbjct: 309 LLFEFDAQGRYLDVYSGGSSTRLLYRDSDEIIGRRVGEVLPADAAAIVLESISVALRDGA 368

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
            YG+T    I G       +L+        R+ +G        + R      AL +  ++
Sbjct: 369 DYGRTMELDIGG--QPHWFELST------TRKATGHVLTLSRDITRRRAAEEALLQARER 420

Query: 203 KFSHLHEIK-KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
           +     + + +  S            +          ++  + E+     D       P 
Sbjct: 421 EVIAERDRRLRALSDAAPLPMLYLRGEVVESSNVAFRELFGVDEHELGSFDAWWRLVCPD 480

Query: 262 LTSEES-SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
             + E+     +E             +    ++         L+    
Sbjct: 481 DAAREAMQRAWREAVERAAREGGRVHEIECRVRVRGGLDLVLLAGGQQ 528


>gi|298482954|ref|ZP_07001136.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
 gi|298270926|gb|EFI12505.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
          Length = 621

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 118/519 (22%), Positives = 206/519 (39%), Gaps = 40/519 (7%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
            S        E +        P+   +Y   G +   N   + + +  + +DI       
Sbjct: 125 ASAHQALQNSERILHNIYKNLPVGIELYDKDGQMVDLNKKDMEMFRISNKEDILGVN--- 181

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI-----QWNRENSLAMTFIPFEKAN 422
            + + P L +    K      +D            I       +    + +T       +
Sbjct: 182 -IFENPILPEEIKQKIKDNENAD---FTFRYDFSKINKYYQPNSTTGFIDLTTKVTTLYD 237

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN---REGI-ILSTN 478
              E +    I  +  +  I   K++        + +    G A  +   R+G  + S  
Sbjct: 238 HNHEPINYLLINVDKTEDTIAYNKIQEFESFFDLVGDYAKVGYAHFDALSRDGYALRSWY 297

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
           R V +  G P+ +I+             +VM  +L +++       L +       +E  
Sbjct: 298 RNVGEEEGTPLPEIIG--IHSHFHPEDRAVMIDFLDKVIK-GESSKLSRDVRIRRADENY 354

Query: 539 LSLRIIIK-----KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
              R+ +                   DI+E K+ +  L  AK+ AE+    KS FLA +S
Sbjct: 355 TWTRVNVLVRNYQPQDNIIEMLCINFDITELKETERMLIGAKEKAEEADRLKSAFLANMS 414

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HEIRTPL AI+GFS    +             YA  I+ +  L+L +++D+LD+SKIE+G
Sbjct: 415 HEIRTPLNAIVGFS----SLLEEAEDAEEKHLYATIIEENNKLLLQLISDILDLSKIEAG 470

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI--LADLRSVKQIALNI 711
             ++  E V   +  +E +  +Q+ A E+   +    A  +P +   +D   + Q+ LN 
Sbjct: 471 TFDIIPEQVDAQQLCNELLQSMQVRATEQ---VEILLAPELPELTFTSDKNRLYQVLLNF 527

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           ++NA+ FT  G  I+I        EV   V+DTG+G+   + E     F ++ N      
Sbjct: 528 VTNALKFTSEGS-IVIDYRIN-GNEVRFSVQDTGMGIEPEKQEAIFTRFVKLNNFIA--- 582

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            GTGLGLP+ +++V    GK  + S P KG+      P+
Sbjct: 583 -GTGLGLPICQSIVTQLGGKIGVESEPGKGSCFWFTHPI 620


>gi|281490938|ref|YP_003352918.1| Two-component sensor histidine kinase [Lactococcus lactis subsp.
           lactis KF147]
 gi|281374696|gb|ADA64216.1| Two-component sensor histidine kinase [Lactococcus lactis subsp.
           lactis KF147]
          Length = 480

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 79/384 (20%), Positives = 155/384 (40%), Gaps = 38/384 (9%)

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
           D    +  +E +  QL SIL    DG+   +R G I+  N++         + +++K   
Sbjct: 100 DIVRTQNNLENQRNQLDSILAYMVDGVIATDRRGNIIMANKSALHYLNTDNDLLMQKNIV 159

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS--- 555
             L+          L +          E          + +SL I        S +    
Sbjct: 160 EVLKIADQYNFYDLLEK--------EPEITIETHDAGNESISLHIKFALFRRESGFISGI 211

Query: 556 -LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
              +HD++E  + + +              +  F++ VSHE+RTPLT++  + E +++  
Sbjct: 212 IAVLHDMTEQDKAERE--------------RRLFVSNVSHELRTPLTSVKAYLEALEDGA 257

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS----- 669
                      + N      N ++ +++DLL +S+++  ++ L+ E ++L   +      
Sbjct: 258 I--EDKETASSFINVSLTETNRMIRMISDLLTLSRMDQDRIVLNKEMINLIAFLDYQINR 315

Query: 670 --EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727
             + +             +   ++     +  D   + Q+  NI+ NAI ++P GG I I
Sbjct: 316 LDQILETESNDLISSNFTLVRKYSEQPIWVEIDTDKIAQVIDNIIGNAIKYSPKGGTITI 375

Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN-SQQIRGEGTGLGLPLAKAMVD 786
           S     ++ V++ + D G+G+   +L K    F ++ N S+  +  GTGLGL +   +V 
Sbjct: 376 SVEKRESD-VLISISDQGMGIPKSDLLKIFDRFYRVDNASRNSKVGGTGLGLSIVHDIVK 434

Query: 787 ANMGKFYIFST-PAKGTLIEIIFP 809
            + G  +  S    KGT      P
Sbjct: 435 IHGGTIFASSEGEGKGTTFSFTLP 458


>gi|90415044|ref|ZP_01223004.1| hypothetical protein P3TCK_19810 [Photobacterium profundum 3TCK]
 gi|90323858|gb|EAS40464.1| hypothetical protein P3TCK_19810 [Photobacterium profundum 3TCK]
          Length = 697

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 92/423 (21%), Positives = 175/423 (41%), Gaps = 22/423 (5%)

Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR--KMEIEVM 452
           +  A L  +   +           ++     E    +    E + + +  R  ++     
Sbjct: 142 SGDAVLLFVHSKKGQFTPQCRRVLDRFRPLLERAIIDIDYRERLQSLVTARTQELTHSQQ 201

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
           +     +   D    ++ +      +             I               +    
Sbjct: 202 RFKDFAKTVGDWFWEVDTDYQFTYISAP-----HLANHVIDNTTILDIF-GEQSELRVKL 255

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEK 568
           L ++ S    + +E       ++E  L + +              Y  T  DI+  KQ  
Sbjct: 256 LDQLKSKKTFEDIEWKLP---EDEGALWITLSGTPYFNKQGKLLGYRGTAKDITHRKQRL 312

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
            +L  A+K AE  ++ KS+FLA +SHEIRTPL A++G  + + +       + + +E+ +
Sbjct: 313 VELQLARKQAETANNAKSEFLAMMSHEIRTPLNAVLGLMDTLVDSGL----DEKQMEWVS 368

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            +++S  L+L I+ND+LD+S+IESGK  L    + + ++++  ++ +   A  K I + T
Sbjct: 369 QMEQSAQLLLTIINDILDLSRIESGKFELFNADIHIADSINLVVNQLNEQAKRKNITLTT 428

Query: 689 SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747
               ++P  +L D   + Q+  N++ NAI FT  G  + +S     N  + + V DTG+G
Sbjct: 429 QIDASVPDSMLGDKNRIAQVMFNLIGNAIKFTNVGS-VRVSVKAV-NNNIEIAVIDTGIG 486

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           +  Y  +    PF Q   S   R  GTGLGL ++  ++    G   + S    G+   + 
Sbjct: 487 IAPYAQKTLFNPFIQADGSITRRYGGTGLGLAISMHLIKKMDGNISLDSVLNVGSCFTVS 546

Query: 808 FPL 810
            P+
Sbjct: 547 IPI 549



 Score = 45.8 bits (107), Expect = 0.027,   Method: Composition-based stats.
 Identities = 21/164 (12%), Positives = 44/164 (26%), Gaps = 14/164 (8%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG--DLLKRQNTWY 144
           W +D       IS          A  +I      + DI        +   D LK + T+ 
Sbjct: 215 WEVDTDYQFTYISAPHL------ANHVIDNT--TILDIFGEQSELRVKLLDQLKSKKTFE 266

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
                 P +     + I L+  P +++  +  G+RG                 +   K+ 
Sbjct: 267 DIEWKLPEDEGA--LWITLSGTPYFNKQGKLLGYRG--TAKDITHRKQRLVELQLARKQA 322

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA 248
              +  K    ++   +              + +      +   
Sbjct: 323 ETANNAKSEFLAMMSHEIRTPLNAVLGLMDTLVDSGLDEKQMEW 366


>gi|15672378|ref|NP_266552.1| sensor protein kinase [Lactococcus lactis subsp. lactis Il1403]
 gi|12723269|gb|AAK04494.1|AE006276_9 sensor protein kinase [Lactococcus lactis subsp. lactis Il1403]
          Length = 480

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 79/384 (20%), Positives = 155/384 (40%), Gaps = 38/384 (9%)

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
           D    +  +E +  QL SIL    DG+   +R G I+  N++         + +++K   
Sbjct: 100 DIVRTQNNLENQRNQLDSILAYMVDGVIATDRRGNIIMANKSALHYLNTDNDLLMQKNIV 159

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS--- 555
             L+          L +          E          + +SL I        S +    
Sbjct: 160 EVLKITDQYNFYDLLEKEP--------EITIETHDSGNESISLHIKFALFRRESGFISGI 211

Query: 556 -LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
              +HD++E  + + +              +  F++ VSHE+RTPLT++  + E +++  
Sbjct: 212 IAVLHDMTEQDKAERE--------------RRLFVSNVSHELRTPLTSVKAYLEALEDGA 257

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS----- 669
                      + N      N ++ +++DLL +S+++  ++ L+ E ++L   +      
Sbjct: 258 I--EDKETASSFINVSLTETNRMIRMISDLLTLSRMDQDRIVLNKEMINLIAFLDYQINR 315

Query: 670 --EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727
             + +             +   ++     +  D   + Q+  NI+ NAI ++P GG I I
Sbjct: 316 LDQILETESNDLISSNFTLVRKYSEQPIWVEIDTDKIAQVIDNIIGNAIKYSPKGGTITI 375

Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN-SQQIRGEGTGLGLPLAKAMVD 786
           S     ++ V++ + D G+G+   +L K    F ++ N S+  +  GTGLGL +   +V 
Sbjct: 376 SVEKRESD-VLISISDQGMGIPKSDLLKIFDRFYRVDNASRNSKVGGTGLGLSIVHDIVK 434

Query: 787 ANMGKFYIFST-PAKGTLIEIIFP 809
            + G  +  S    KGT      P
Sbjct: 435 IHGGTIFASSEGEGKGTTFSFTLP 458


>gi|258511694|ref|YP_003185128.1| PAS/PAC sensor signal transduction histidine kinase
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257478420|gb|ACV58739.1| PAS/PAC sensor signal transduction histidine kinase
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 590

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 98/553 (17%), Positives = 194/553 (35%), Gaps = 39/553 (7%)

Query: 278 INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS 337
                 + K+   +      E    +    + + +A     + +TP           V  
Sbjct: 57  ATATDRSIKEQVASDIAKRVERATVVYGIPYTANAALKAAYDAMTPAERQALSRGQPVTL 116

Query: 338 HGNLFYANP--SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN----AIKPVMLYRSDR 391
            G L   N    ++ +   +S     +A    T +    L +          + +  +  
Sbjct: 117 RGALGKVNRLTVYVQIPSARSPQPGMLAVSQDTSVLDEPLREIRNMVLFDTVLGVILATG 176

Query: 392 TCIAASARLHTIQWNRENSLAMTFI---PFEKANQFPENMPQNGIEPEDVDTRINK--RK 446
                S  L     +   +                  + + + G     +  ++ +   +
Sbjct: 177 FAFVISKNLSRPLVDMTRAAEEMARGHYRQRVRVVTKDEVGRLGHTFNALARQLAETIEQ 236

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
           + +E   L  IL +  DG+   + +G ++  N    +   +           +  E+  P
Sbjct: 237 LSMEREGLQRILSSLQDGVVATDLDGRVVLANPPAKRHLRHLSVAERG----IVDEERLP 292

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQ 566
             +      +         E    G T    +L L                + DI+E ++
Sbjct: 293 DRLMSLWVRVREQQDAVYREDTWDGRTIGITMLPLYETDGTTL--RGALCVLRDITEERR 350

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
                             + DF+A VSHE+RTPL+ + G++E + +            E 
Sbjct: 351 L--------------DRLRKDFIANVSHELRTPLSMLQGYTEALLDDISD--DPDMRREL 394

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA-NEKRIL 685
              I      +  +VNDLL+++++ESG+  LHF  V L + +       Q  A +E  + 
Sbjct: 395 TEIIHDETLRMKRLVNDLLNLAQLESGQFKLHFARVDLTQVMRRVARKFQALASDEDHLT 454

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
              S  ++   +  D   ++Q+  N+L NA   T  G  I        +    +RV DTG
Sbjct: 455 FEVSIPDHPVMVDGDEDRLEQVFTNLLDNAFRHTAQG-TIRFELDIRHD-YAYVRVADTG 512

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
            G+   ++    + F +   ++     GTGLGL +A+ +V  + G+  + S   +GT   
Sbjct: 513 SGIPEEDVPYIFERFYKADKARTRSRSGTGLGLAIARQLVIEHRGEILVESHLGEGTTFT 572

Query: 806 IIFPLYDTSHPHD 818
           ++ PL   + P+D
Sbjct: 573 VVLPL---ASPND 582


>gi|329725822|gb|EGG62301.1| sensor protein kinase WalK [Staphylococcus aureus subsp. aureus
           21172]
          Length = 608

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 79/388 (20%), Positives = 171/388 (44%), Gaps = 29/388 (7%)

Query: 426 ENMPQNGIEPEDVDTRINKRKM--EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           + + +  +   ++  R+ + +   E E  +L S++   SD I   +R G I   N    K
Sbjct: 235 DEIGELALAFNNLSKRVQEAQANTESEKRRLDSVITHMSDVIIATDRRGRIRIVNDMALK 294

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           + G   EDI+       L       +        S  L    E+  +        ++   
Sbjct: 295 MLGMAKEDIIGYYMLSVLSLEDEFKLEEIQENNDSFLLDLNEEEGLIAR------VNFST 348

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
           I+++  F + Y   +HD++E +Q + +              + +F+A VSHE+RTPLT++
Sbjct: 349 IVQETGFVTGYIAVLHDVTEQQQVERE--------------RREFVANVSHELRTPLTSM 394

Query: 604 IGFSEVIKNQRFGPLGNPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
             + E ++    G   +     ++ +        ++ +VNDLL +SK+++    ++ E +
Sbjct: 395 NSYIEALEE---GAWKDEELAPQFLSVTREETERMIRLVNDLLQLSKMDNESDQINKEII 451

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
             +  +++ I+  ++ A  K                 D   + Q+  N+++NA+ ++   
Sbjct: 452 DFNMFINKIINRHEMSA--KDTTFIRDIPKKTIFTEFDPDKMTQVFDNVITNAMKYSRGD 509

Query: 723 GQIIISTTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
            ++            + +R++D G+G+   +++K    F ++  ++  +  GTGLGL ++
Sbjct: 510 KRVEFHVKQNPLYNRMTIRIKDNGIGIPINKVDKIFDRFYRVDKARTRKMGGTGLGLAIS 569

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           K +V+A+ G+ +  S   +GT I I  P
Sbjct: 570 KEIVEAHNGRIWANSVEGQGTSIFITLP 597


>gi|330832446|ref|YP_004401271.1| sensor histidine kinase [Streptococcus suis ST3]
 gi|329306669|gb|AEB81085.1| sensor histidine kinase [Streptococcus suis ST3]
          Length = 449

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 89/404 (22%), Positives = 166/404 (41%), Gaps = 34/404 (8%)

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDT-RINKRKMEIEVMQLCSILEATSDGIAIINREG 472
            +         PE         +  +  R+    +E E  +L SIL   SDG+   +R G
Sbjct: 55  NYADVLDMRGSPEITDMANSLNDLSEVIRLTHDNLEQEKTRLTSILSYMSDGVIATDRIG 114

Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
            I+  N    K  G   +   +      L+ +    +   L +   + +  T E      
Sbjct: 115 RIIMINDMAQKQLGLSSQKQEQYHLLEVLDLSDRYTLRDLLAQTPEIAIDHTNENE---- 170

Query: 533 TKEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
               + L+LR     +   S       + +HD++E  +E+ +              +  F
Sbjct: 171 ----EFLTLRANFATIRSESGLISGLVVVLHDMTEQAKEERE--------------RRLF 212

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
           ++ VSHE+RTPLT++  + E +     G L       +        N ++ ++ DLL +S
Sbjct: 213 VSNVSHELRTPLTSVKSYLEAL---DEGALTESVAPSFVKVSLDETNRMMRMITDLLSLS 269

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYAN---EKRILIRTSFANNIPRILADLRSVK 705
           +I++    +  E ++    V+  ++      N   +K   I   +  +   +  D   + 
Sbjct: 270 RIDNQVGQIDVELINFTAFVTFILNRFDQMKNTDSDKVYTIVRDYQISPIWVEIDTDKMT 329

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           Q+  NIL+NAI ++P GG I  S   T + ++I+ V D G+G+   +L +    F ++  
Sbjct: 330 QVLDNILNNAIKYSPDGGTITFSMKTTDS-QLIVSVSDEGLGIPKTDLPRIFDRFYRVDK 388

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           ++     GTGLGL +AK +V  + G  +  S    G+   I+ P
Sbjct: 389 ARSRAQGGTGLGLAIAKEIVKQHKGFIWAKSEYGHGSTFTIVLP 432


>gi|261344881|ref|ZP_05972525.1| sensor histidine kinase/response regulator [Providencia rustigianii
           DSM 4541]
 gi|282567019|gb|EFB72554.1| sensor histidine kinase/response regulator [Providencia rustigianii
           DSM 4541]
          Length = 781

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 94/490 (19%), Positives = 196/490 (40%), Gaps = 24/490 (4%)

Query: 329 CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388
             +   ++  G++       L +        I     +  L    +  + +  +   +  
Sbjct: 38  MQMAVAIFLRGHVDS-----LDMVGSILFGLIITPLAVYFLSVVVEQLEESRQRLTRMVD 92

Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
                    A L+T Q           I   +  +         ++ E       + + E
Sbjct: 93  KLEVMRHRDAELNT-QLQGNIEQLNLEIIEREKAESAHLELLEQLKQEMKFREQTQIEFE 151

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
            + + L S L+A+ D +   N        NRA+  L G   + ++        +    + 
Sbjct: 152 QQSVLLRSFLDASPDLVYYRNENNEFSGCNRAMELLTGKSEKQLVGLTPLDIYDAEIAAK 211

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII--KKLPFSSCYSLTMHDISEWKQ 566
           +     ++   ++  T E+  +     +    LR +    ++           DI+E K+
Sbjct: 212 VMETDEKVFRHNVALTYEQWLVYPDGRKACFELRKVPFYDRVGKRHGLMGFGRDITERKR 271

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
            +  L +        S  K+ F++ +SHE+RTPL  I+G S ++ + +           Y
Sbjct: 272 YQEALEN-------ASRDKTTFISTISHELRTPLNGIVGLSRILLDTKLSK----EQASY 320

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
              I  S   + +I ND++++ KIE  K+ L  +PV L E V++  +L  L    K +  
Sbjct: 321 LKTIHVSAITLGNIFNDVIEMDKIERRKVQLDNQPVVLPEFVNDLENLSGLLVQPKGLKF 380

Query: 687 RTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
               A  +P  IL D   ++QI  N++ NA+ FT  G ++ +S    ++ ++  +V+D+G
Sbjct: 381 VLDVARGLPKTILTDGTRLRQILWNLIGNAVKFTQKG-EVKLSIWREADNKLFFQVKDSG 439

Query: 746 VGMTNYELEKAMKPFGQI-PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           +G+   EL+K    + Q+  ++      GTG+GL +++ +  +  G   + S   +G+  
Sbjct: 440 IGIPQDELDKIFAMYYQVRDSAGGRPATGTGIGLSVSRRLAQSMGGDIQVESKIGQGSTF 499

Query: 805 EIIF--PLYD 812
            +    P+ +
Sbjct: 500 TLSITAPVVE 509



 Score = 39.2 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 13/128 (10%), Positives = 30/128 (23%), Gaps = 13/128 (10%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT-----L 149
               +  +    G    +++G         L I        +++     +          
Sbjct: 177 FSGCNRAMELLTGKSEKQLVG------LTPLDIYDAEIAAKVMETDEKVFRHNVALTYEQ 230

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
           W +         +L  +P Y R  +  G  GFG           +   +   +  +    
Sbjct: 231 WLVYPDGRKACFELRKVPFYDRVGKRHGLMGFG--RDITERKRYQEALENASRDKTTFIS 288

Query: 210 IKKGHSSV 217
                   
Sbjct: 289 TISHELRT 296


>gi|294636583|ref|ZP_06714944.1| putative sensor/response regulatory hybrid protein [Edwardsiella
           tarda ATCC 23685]
 gi|291090170|gb|EFE22731.1| putative sensor/response regulatory hybrid protein [Edwardsiella
           tarda ATCC 23685]
          Length = 996

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 92/490 (18%), Positives = 177/490 (36%), Gaps = 34/490 (6%)

Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
           ++  +T Y+  + +  +  +        +      + +                  +   
Sbjct: 1   AYCQITGYRREELLGNSPSI----VNSGIHPPAFWRQLWETLRQEEAWRGEICNRAL--- 53

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE------- 459
                 +        +          I+ +    +  +  + I   QL    E       
Sbjct: 54  DGRLYWVDTTIAPFKDAEGRIEKYIAIQFDITQAKTLQINLSIARNQLQRATEVAELGVW 113

Query: 460 --ATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
             + +DG    +     +       +        +    +   +  +  + ++  L   L
Sbjct: 114 SWSMADGTLTFDDTMNAIYAIPPAMQ----DPHRLYGY-WHTLIHPDDVAEVDRTLQATL 168

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---YSLTMHDISEWKQEKNKLSHA 574
                Q   ++       ++ +     + +               DI+  +Q +  L  A
Sbjct: 169 RAGQGQVCRQVFRIHVNGQERIIESAAVVEYQGVGDTLMLVGINRDITRQRQAEATLQAA 228

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
           K  AE  +  KS FLA +SHE+RTPL AI+G   ++           R  +YA   + + 
Sbjct: 229 KLAAENANQAKSAFLANMSHELRTPLNAILGMLALLLKSGLTH----RQADYATKSEAAA 284

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
             +L ++ND+LD SKIE+GKM L  EP +L   + +   ++   +++K + +       +
Sbjct: 285 QALLRLLNDILDYSKIEAGKMELEAEPFNLCALLQDLAVILASNSHKKPVEVLFDIDPRL 344

Query: 695 P-RILADLRSVKQIALNILSNAIHFTPSGGQ---IIISTTHTSNEEVILRVRDTGVGMTN 750
           P  ++ D   ++Q+ +N+  NA+ FT  G     I +      N  +   VRDTG+G+  
Sbjct: 345 PRWLIGDSLRLQQVLINLGGNALKFTEQGEVVLFIHLIEQDAQNATLHFGVRDTGIGIAP 404

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL--IEIIF 808
            +       F Q   S   R  GTGLGL +++  V        + S P KG+L    +  
Sbjct: 405 EKQRLIFSGFSQAEASITRRFGGTGLGLSISQRFVAMMGSTLELESEPGKGSLFHFTLTL 464

Query: 809 PLYDTSHPHD 818
           PL    H  D
Sbjct: 465 PLAAEQHSDD 474



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 22/242 (9%), Positives = 62/242 (25%), Gaps = 14/242 (5%)

Query: 101 ELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGKTTLWPIEGTNLYV 159
              +  G    +++G     V+  +H       + + L+++  W G+     ++G   +V
Sbjct: 1   AYCQITGYRREELLGNSPSIVNSGIHPPAFWRQLWETLRQEEAWRGEICNRALDGRLYWV 60

Query: 160 PIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEK 219
              +A  P          +    I          +        +     E+ +       
Sbjct: 61  DTTIA--PFKDAEGRIEKY--IAIQFDITQAKTLQINLSIARNQLQRATEVAELGVWSWS 116

Query: 220 EKYDIFSQQSP-------PPHLRMKNKVSSLTEYYAHKDDVLK--TEKYPLLTSEESSLP 270
                 +           PP ++  +++        H DDV +        L + +  + 
Sbjct: 117 MADGTLTFDDTMNAIYAIPPAMQDPHRLYGYWHTLIHPDDVAEVDRTLQATLRAGQGQVC 176

Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330
            Q     +N  +   +           ++   +      +     +          +   
Sbjct: 177 RQVFRIHVNGQERIIESAAVVEYQGVGDTLMLVGINRDITRQRQAEATLQAAKLAAENAN 236

Query: 331 IP 332
             
Sbjct: 237 QA 238


>gi|323525343|ref|YP_004227496.1| signal transduction histidine kinase with CheB and CheR activity
            [Burkholderia sp. CCGE1001]
 gi|323382345|gb|ADX54436.1| signal transduction histidine kinase with CheB and CheR activity
            [Burkholderia sp. CCGE1001]
          Length = 1403

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 127/742 (17%), Positives = 261/742 (35%), Gaps = 71/742 (9%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            ID    +  +S+   + + +   ++    +  V   L +D    I   L+ + +   +  
Sbjct: 562  IDRESNVVHLSDNAGRFLRHVGGELSSNIMTLVLPDLRLDLRTAIFRALQTRTSVEARRV 621

Query: 149  LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
             W  EG      I++   P +                      +   L    D+   H+ 
Sbjct: 622  KWAHEGH--VSWINMTVRPFHD------------------AVANAEFLLIVFDEVAGHMT 661

Query: 209  EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
            + ++  ++ +            P   +++ ++    E  A   +  +T    L  S E  
Sbjct: 662  DEEQAEATGQD-----------PVLAQLEQELQHSREQLATIIEQYETSVEELKASNEEL 710

Query: 269  LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
                E+  + +    + K+   ++      +   +  R   +  A  D    +    +  
Sbjct: 711  QAINEELRSTSEELESSKEELQSVNEELTTANAEMQARIEDTAKANDDLHNIIASSEI-- 768

Query: 329  CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388
                 FV     +    P+   +      D       ++  L  P L+D+       L  
Sbjct: 769  --ATVFVDKEIRVKRFTPNATAIFNLIDSDLGRSLFHITHTLRYPTLADDVRQSFQSLRL 826

Query: 389  SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
            ++R           IQ        M  +P+  A+             +  D    +    
Sbjct: 827  TERE----------IQSEAGRWYLMRLLPYRTAD--DHIDGAVITLIDITDRHEAEEAAR 874

Query: 449  IEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
                +L  + ++T D  I I +  G I+S N    ++FGY   +++ +   +  E N   
Sbjct: 875  AGERRLRLVAQSTKDYAIVIQDSAGTIVSWNAGAERIFGYSEAEVVGQNIELIYEHNDRQ 934

Query: 508  VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWK 565
             +        +       +      TKE + +    ++  +  +  + ++  + D++  K
Sbjct: 935  ALLPARER-DTAAKEGRADDERWHRTKEGRRIFCSGVVTPIVDTSFNGFAKILRDLTARK 993

Query: 566  QEKNKLSHA-------KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            Q ++    A       ++ A   +  K +F+A +SHE++ PL  I   +E++        
Sbjct: 994  QREDASREALAREQAAREQALSANQLKDEFIAVLSHELKHPLNLIGVKAEMLPRLPEVRH 1053

Query: 619  GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
              P   + A  I  +      I++DLLD+S+I++GK+ L    V L   +++     +  
Sbjct: 1054 L-PAVWDAAASIRHAVRSQAQIIDDLLDLSRIQTGKLALEVSRVDLVAMIADIADTCEED 1112

Query: 679  ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738
            A+ + I ++   A+     LAD    +QI  N+LSNA+ FT +GG I +  +      + 
Sbjct: 1113 AHARGIGLQIDVADEPAITLADPVRCEQILWNLLSNALKFTDAGGHIEVRLS-RDGRMLR 1171

Query: 739  LRVRDTGVGMTNYELEKAMKPFGQI----PNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
            L V D+G G+    L      F Q            G        L + +V+ + G    
Sbjct: 1172 LEVIDSGQGIEPATLPYIFDMFRQTARGRRRGGLGIGL------ALVRQLVEMHGGHVKA 1225

Query: 795  FST-PAKGTLIEIIFPLYDTSH 815
             S  P  GT + +  P  +  H
Sbjct: 1226 ESEGPGHGTKMTVWLPAMEDEH 1247


>gi|120600688|ref|YP_965262.1| multi-sensor hybrid histidine kinase [Shewanella sp. W3-18-1]
 gi|120560781|gb|ABM26708.1| multi-sensor hybrid histidine kinase [Shewanella sp. W3-18-1]
          Length = 1189

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 95/439 (21%), Positives = 182/439 (41%), Gaps = 28/439 (6%)

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
              W        T +           +             + K+++  ++  + SI++A 
Sbjct: 517 RQSWKDYKYTIYTVVIASTIMILVSIIWAFYTRTHYRKRLLAKKELNQQLQFMQSIVDAI 576

Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP-FTVFLEQNTPSVMNHYLTEILSLD 520
              I + N++  +   N +    F    +D+L K             +++    + L   
Sbjct: 577 PHPIYVRNKQRELTMCNESYLNAFKASRKDLLYKSTIEGASRSPEAPIVDKEYIQALEDG 636

Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIK-KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579
           +    ++    +  +  +         +            D+S+  +   +L HAK++A+
Sbjct: 637 IAVFKDRELHINGDKYNIYHWFKSYGDEAGNVEGIIGGWIDVSDRVKLIEELEHAKEVAD 696

Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639
             S  KS FLA +SHEIRTP+ AIIG  E++  +      +   +        S N +L+
Sbjct: 697 SASQAKSTFLATMSHEIRTPMNAIIGMLELVLQRTNSQQFD---LNSIKVAYDSANDLLE 753

Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RIL 698
           ++ D+LDI++IE+G+++L     +L    +  + +    A +K I ++  F   I   +L
Sbjct: 754 LIGDILDIARIEAGQLSLSPIRTNLKAITTSVVRVFDGLARQKGITLQLDFDPTITNDVL 813

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT----SNEEVILRVRDTGVGMTNYELE 754
            D   +KQI  N++ NAI FT SGG + +         +   ++  V DTG+G++  + E
Sbjct: 814 VDPMRIKQILSNLIGNAIKFTDSGG-VKVEIQSENVTNTTHTILFTVTDTGIGISEDDQE 872

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF------ 808
           K   PF Q   +      GTGLGL +++++ +   G   + S   +GT + +        
Sbjct: 873 KLFSPFSQAHGTHN-THGGTGLGLMISRSLCEMMGGSLILKSKLYQGTQVRMELTLTQLE 931

Query: 809 --------PLYDTSHPHDC 819
                   PL+  S  H+C
Sbjct: 932 TEIVNSSSPLFTES--HEC 948


>gi|118587243|ref|ZP_01544671.1| hypothetical protein VicK [Oenococcus oeni ATCC BAA-1163]
 gi|118432385|gb|EAV39123.1| hypothetical protein VicK [Oenococcus oeni ATCC BAA-1163]
          Length = 630

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 85/408 (20%), Positives = 169/408 (41%), Gaps = 40/408 (9%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
            +  ++      Q     + + +        +E  +L S+L   +DG+  I R+G I   
Sbjct: 245 IKSKDEIGILATQINDLSDTIASETATSN--MESDRLNSLLSNMTDGVLAITRDGTITVI 302

Query: 478 NRAVSKLFGYPVED-ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
           N+A   L   P  D  + K  +  L+     +    L + +                 + 
Sbjct: 303 NQAALDLLHIPRTDKAVGKNISDLLKLVDKKITLRKLFQSIRG----------FVVEPDG 352

Query: 537 KLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
             L++   + +      S   + + D++   + ++   +              F++ VSH
Sbjct: 353 VTLNVVASLVRRQSGFISGAVVVLRDVTRQLKLEDDQKN--------------FVSNVSH 398

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           E+RTPLT++  + E ++             E+          ++ ++NDLL++S+++ G+
Sbjct: 399 ELRTPLTSVNSYIETLQEGAL--TQRKIAREFLGVAHDETQRMIHMINDLLELSRMDQGR 456

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKR--------ILIRTSFANNIPRILADLRSVKQ 706
             +  E V+  + ++  +    +   +           +IR         +  D     Q
Sbjct: 457 TKMDTEAVNFTKFINYVLDRFDVMFKQGHSMHSDNHYKIIRNYDQKKSCYVEIDSDKFMQ 516

Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
           +  N+++NAI+++P GG I I    T +  +IL ++D G+G+   +LE     F ++  S
Sbjct: 517 VVDNVINNAINYSPDGGNIEIGINETDD-SIILSIKDHGLGIPKKDLENVFTRFYRVDKS 575

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           +  +  GTGLGL ++K +V+A  GK  + ST   GT   I  P  DTS
Sbjct: 576 RARKQGGTGLGLAISKEVVEALHGKIRVESTVNVGTTFFISLPKVDTS 623


>gi|117924896|ref|YP_865513.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117608652|gb|ABK44107.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 964

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 95/374 (25%), Positives = 173/374 (46%), Gaps = 17/374 (4%)

Query: 446 KMEIEVMQL-----CSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTV 499
            + I+  +L      +I EA    + +   ++G +   N+A  + F    +  +  P + 
Sbjct: 163 ALSIQRERLSERSTRAIFEAAPFPMILAGIKDGRVRRLNQAAQQFFKVGGDLPVSYPASA 222

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI-IIKKLPFSSCYSLTM 558
                     N     + +    +  E       +      +    + K    +   L  
Sbjct: 223 LFL--DQQAFNVIRRRLQNGASVRHKEYEVRDLEEHASWSLVSAYALNKNVGEALMVLGF 280

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            +I+  K+ +  L  AK+ AE+ +  KS FLA +SHEIRTP+ ++IGFS +         
Sbjct: 281 AEITTLKKVQADLLLAKEQAEEATRAKSAFLANMSHEIRTPMNSVIGFSHLALKTNL--- 337

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
            + +  +Y N I  S   +L ++ D+LD SKIE+GK+ +   P +LDE +    +L    
Sbjct: 338 -DKQQSDYLNKILFSARSLLGLIGDILDFSKIEAGKLTVESLPFTLDEMLDSVAALNANR 396

Query: 679 ANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEE 736
           A EK + +  S ++N+P+ ++ D   + Q+  N++SNA+ FT  G  Q+++   H   +E
Sbjct: 397 AEEKGLDLIFSHSSNLPQALIGDPLRLGQVLTNLVSNAVKFTTEGHVQVLVEPLHQQEQE 456

Query: 737 VI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
           ++    V D+G+GM++ ++     PF Q+  S   R  GTGLGL + + +V+   G   +
Sbjct: 457 LLLKFSVIDSGMGMSSEQVSLLFTPFTQVDVSHTRRFGGTGLGLAICRNLVEMMGGSISV 516

Query: 795 FSTPAKGTLIEIIF 808
            S    G+  E   
Sbjct: 517 RSQEQVGSHFEFTI 530


>gi|83312635|ref|YP_422899.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82947476|dbj|BAE52340.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 607

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 94/555 (16%), Positives = 198/555 (35%), Gaps = 24/555 (4%)

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF-DEGEN 320
                 ++       T+ L     +     LQ    E       R+  SL +    E   
Sbjct: 68  PGPPAWAVAGLGVALTLVLVARCGRAEGAALQALRAEIGPLRKERDRLSLLSEVVKESSE 127

Query: 321 LTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
              E  +     F+         + + SF  +    S D +               SD  
Sbjct: 128 RYREYSEAAADWFWESDAEQRFTFFSSSFETVMNIMSDDLLGKRSWDIVSERMEIDSDQW 187

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
                 L              + ++     +  +      + +     +   G   +   
Sbjct: 188 QAHIADLTAQ----RPFRDFKYWLEDGNGRARWIKVNGLPRFDDDGVFIGYRGTGSDIT- 242

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
                 +    +  L   +E +   I I +    I   N +  ++ GY +++++ +   +
Sbjct: 243 ---AAVENAHRMHMLNRAVEQSPVSIVITDLNAEIQYVNSSFLRITGYSMDEVIGRNPRI 299

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YS 555
                TP      +   LS   +   E   +   K  +L   +  I+ +         Y 
Sbjct: 300 LRSDTTPPETFQNMWAALSAGEKW--EGELINRRKSGELYWEQATIQPIQNIEGVITNYL 357

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
               DI+E K+   KL+   +   + +     F    SH++R PL  I  +   +  ++ 
Sbjct: 358 AVKSDITEQKKAAAKLAELVEELRRSNEELEQFAYVASHDLRQPLRMISAYLA-LLEKKL 416

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
               +    ++  +       +  ++ DLL+ S+I  G++    EPVSL E VS A+  +
Sbjct: 417 SASFDQDARDFFGFAIDGARRLDRMIVDLLEYSRI--GRITAPMEPVSLGEVVSNALRYL 474

Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
           ++   E    +     + +P I  D   + ++  N+++NAI + P G Q  I     +  
Sbjct: 475 EVAVAESGSEVVV--PDGLPTISGDGGELVRLFQNLIANAIKYMPEGRQPRIEVLCRAQG 532

Query: 736 -EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
            E ++ V+D G+G+   +L++    F ++    + + EGTG+GL + + + + + G+ ++
Sbjct: 533 AEWVVGVKDNGIGIPPDDLKRVFGIFQRLVA--REQFEGTGIGLAVCRKIAEHHGGRIWV 590

Query: 795 FSTPAKGTLIEIIFP 809
            S    G+   + FP
Sbjct: 591 ESEMGVGSTFLVAFP 605



 Score = 70.4 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/252 (13%), Positives = 66/252 (26%), Gaps = 14/252 (5%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIG-MRLCDVSDILHIDPNNHIGDL--LKRQNTW 143
           W  DA       S      +   +  ++G      VS+ + ID +     +  L  Q  +
Sbjct: 141 WESDAEQRFTFFSSSFETVMNIMSDDLLGKRSWDIVSERMEIDSDQWQAHIADLTAQRPF 200

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                 W  +G      I +  LP +  +  F G+RG G       D             
Sbjct: 201 RDFK-YWLEDGNGRARWIKVNGLPRFDDDGVFIGYRGTG------SDITAAVENAHRMHM 253

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEKYPL 261
            +   E       +     +I    S    +     ++V          D         +
Sbjct: 254 LNRAVEQSPVSIVITDLNAEIQYVNSSFLRITGYSMDEVIGRNPRILRSDTTPPETFQNM 313

Query: 262 LT--SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
               S       +      +   Y ++     +QN       YL+ ++  +         
Sbjct: 314 WAALSAGEKWEGELINRRKSGELYWEQATIQPIQNIEGVITNYLAVKSDITEQKKAAAKL 373

Query: 320 NLTPETVDKCPI 331
               E + +   
Sbjct: 374 AELVEELRRSNE 385


>gi|254443566|ref|ZP_05057042.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198257874|gb|EDY82182.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 730

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 100/462 (21%), Positives = 176/462 (38%), Gaps = 41/462 (8%)

Query: 392 TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV 451
           +   A   L +   +    +   +      +            P      I  +K +  +
Sbjct: 142 SGFTAVIDLESESIHDAARILCAYAKQAAKDSLVIGATAAIRPPNAKQPPITLKKSDAGL 201

Query: 452 MQLCSILEATSDGIAIINR--EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
             L + +E    G+ +I+    G I   N  + +LF     +++ K             +
Sbjct: 202 KYLAAAVEMLDIGVYVIDESQNGEISVWNSEMERLFQIGKNEVIGKQIHELFNDPLVCGV 261

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWK 565
              L+   S +       I              I   +L   +         + D++   
Sbjct: 262 FRDLSTDFSQNRA-----IFPSKGLSRSNFIADISKTQLHGINGQQSAIVGIIQDVTNRI 316

Query: 566 QEKNKLSHAKKI----------------------------AEKESSHKSDFLARVSHEIR 597
             +N+L  A                               A+  +  KS FL+ +SHE+R
Sbjct: 317 HSENRLIAAFNELETSKEKLEQSNLEIRKGIEKAKKLAVVAQSSNKAKSYFLSNISHELR 376

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TPL +I+  ++ +    FG L N +  E    +  S   +  ++ND+LD+SKIE GKM L
Sbjct: 377 TPLNSIVSLTQALLEGTFGDL-NAKQHENLEIVSESSKHLQSLINDILDLSKIELGKMTL 435

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
            F    + +    +I +++  A+ K +         +  I  D + ++QI LN+L NA+ 
Sbjct: 436 KFAQAGIGDIARSSIRMIEQEASLKNVRCILEINTELENIEVDAKRLRQILLNLLVNAVK 495

Query: 718 FTPSGGQIIISTTH-TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
           FT S   + +     + NE V+  V D G+G+   +  K   PF Q+ +S     EGTGL
Sbjct: 496 FTKSNTDVTLQIEENSENESVVFNVIDHGIGIDQNDFSKIFSPFTQLDDSLSRHYEGTGL 555

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
           GL +A   V+ + G   + STP  G+   I  P+  T    +
Sbjct: 556 GLAIASKFVELHGGGLRVASTPDLGSTFTISLPIEQTKDEEE 597


>gi|160889867|ref|ZP_02070870.1| hypothetical protein BACUNI_02298 [Bacteroides uniformis ATCC 8492]
 gi|156860859|gb|EDO54290.1| hypothetical protein BACUNI_02298 [Bacteroides uniformis ATCC 8492]
          Length = 896

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 126/651 (19%), Positives = 223/651 (34%), Gaps = 36/651 (5%)

Query: 178 FRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM- 236
           F G  +    R   +       L++K   L+EI+K       +            H  + 
Sbjct: 102 FDGMVLCQY-RDITERSQRKLELERKNQELNEIQKAALIGNWQYDSDTKNFKYAGHTNIL 160

Query: 237 ----KNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL 292
                 +++          +  K+    L  + +  +    D+  +   +    +     
Sbjct: 161 CTEETQEINLNDYLKLILPEDRKSFTNWLKENLKGKMENSVDYRILLQEKIFYIRLKAFA 220

Query: 293 QNNSKESFEYLSHRNHPSLSAYFDEGE-NLTPETVDKCPIPFF-VYSHGNLFYANPSFLL 350
           +   K+    L               + NL    +D      +  +  G L + N  F  
Sbjct: 221 REYHKDKNTILEGYIQNITDIQQRRNDINLLTHAIDNSTEDIYSAHEDGTLIFGNRCFKE 280

Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
                +  DI         L +      +  +     +   T                 +
Sbjct: 281 RHGIGNTQDITKLKIYD--LPSYGRDKKSWKEFAECVKRGETSQGYIVHNPLPLRPEVLA 338

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470
           +                        +      ++++++   + L  I+E    GI + + 
Sbjct: 339 IEGNAYWVTSDKGEGTVWTFG---RDVSTRIRHEQQIKQFYLILDKIIENLPAGIVVKDI 395

Query: 471 EGII--LSTNR-AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
                 L  NR + ++    P+++ L K    F    T         EI           
Sbjct: 396 NNNFKYLYRNRESYNR--EIPIQEALGKDDFDFYPLETAQEKRAQDIEIARTGKEMHWIA 453

Query: 528 ITLGSTKEEKLLSLR---IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
                      + L    + I+   FS        DI+E +Q K +L  AK+ AE     
Sbjct: 454 EE--RDGNGNPIYLDKRKMKIESNDFSPILLNIEWDITEMEQMKRELLVAKEKAETSDRL 511

Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
           KS FLA +SHEIRTPL AI+GFS +I             + Y   ++ +   +L ++N++
Sbjct: 512 KSAFLANMSHEIRTPLNAIVGFSRIIAE----STDEEERLGYYEIVESNNERLLQLINEI 567

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704
           LD+SKIESG +     PV L     E          E  + +    ++    I  D   +
Sbjct: 568 LDLSKIESGIVEFTITPVRLHPLCKEIHDAHIFRCPE-GVELIYEPSDENIVIDGDKNRI 626

Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNE-EVILRVRDTGVGMTNYELEKAMKPFGQI 763
            Q+  N++ NA  FT SG    IS  +      V   V DTG+G+   ++++  + F ++
Sbjct: 627 FQVISNLIGNAFKFTTSG---HISYGYRREGKYVAFHVTDTGMGIAPDKVDRVFERFVKV 683

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
            N      +GTGLGL + K +++   G   + S   KGT    + PL  TS
Sbjct: 684 NNF----AQGTGLGLSICKTIIERLGGNISVTSEVGKGTTFTFVLPLESTS 730



 Score = 44.6 bits (104), Expect = 0.073,   Method: Composition-based stats.
 Identities = 17/143 (11%), Positives = 43/143 (30%), Gaps = 15/143 (10%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILST---NRAVSKLFGYPVEDILRKPFTVFL 501
           ++ E     L    +       +++++GI +     N     L+    + +L K     +
Sbjct: 6   KQAENAERLLKLTSDTM----ILLDKDGICVDIAVYN---INLWFLKEDQLLGKNLFQLM 58

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDI 561
             +T + +     ++L+  +R       +            +                DI
Sbjct: 59  PLSTYNQIYPDFKKVLTHKIRSIHNYE-MALNGTNYFFKCIMSPF----DGMVLCQYRDI 113

Query: 562 SEWKQEKNKLSHAKKIAEKESSH 584
           +E  Q K +L    +   +    
Sbjct: 114 TERSQRKLELERKNQELNEIQKA 136


>gi|83309766|ref|YP_420030.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82944607|dbj|BAE49471.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 586

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 123/598 (20%), Positives = 216/598 (36%), Gaps = 42/598 (7%)

Query: 236 MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN 295
           M    + +      +     +      ++  +   +    +   L+     +       +
Sbjct: 5   MAEASALIWASMRARRAGRASNSSRSTSTAVNCFSQNVPGNRAALSDGGPLEGAQDSFRD 64

Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYK 355
             E       R                  TV   P+P  +           S        
Sbjct: 65  RDEGGRSAQPRKASPAPISSMSRRRSVVMTVP--PVPAMIGR--------RSPCDNCGSA 114

Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
                         L  P       +   ML                     E    +  
Sbjct: 115 GQGLHPGRILPFGHLVWPGGHAYLYLMRGMLEVGLPVRTPRGIGPGRESLRDETPARLRA 174

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
                     E      +           R +     +    +   ++G+   N     L
Sbjct: 175 RVKALEIAQREAQRTQRVLLATT------RALRESEERYALAMRGPNEGLWDWNPITKEL 228

Query: 476 STNRAVSKLFGYPVEDILRKPFTVF--LEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
             +  +  + G+  + +          +           L   L  +     E     + 
Sbjct: 229 YLSARLLSILGFESDTLRTTSHEWLELVHPEDRDRYQATLVRHLKGEDAH-FECEYRVTD 287

Query: 534 KEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKN------------------KL 571
           ++ +   +      +  +         ++ D++E    +                   +L
Sbjct: 288 RDGRWRWVLARGLAVLDADGVATRMVGSIGDVTERHAYQRALQEANEQLEQRVVERTREL 347

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
             A+  AE+ +  KS+FLA +SHE+RTPL AIIGFS+V+++  FGP+GN RY EY  +I 
Sbjct: 348 DLARCQAEEANRCKSEFLANMSHELRTPLNAIIGFSDVMRSGVFGPVGNARYGEYIGWIW 407

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
            SG+ +L I+ND+LD++K+E G+ +L  E   +   +  AI LV   A    + +     
Sbjct: 408 DSGHHLLRIINDILDLAKVEVGRFDLSRESTPVLPLLESAIRLVSERATRAEVNVGCKAE 467

Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751
             +   + D   +KQ+ LN+LSNA+ FTP+GG + +   H    +++L V DTG+GM   
Sbjct: 468 PGLGDAMLDPLRMKQVLLNLLSNAVKFTPAGGSVSLEARHE-GTDLVLIVADTGIGMDEE 526

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            LEKA++PF Q+ +S   R  GTGLGLPLAK+  + + G   + S P +GT + +  P
Sbjct: 527 SLEKALQPFVQVESSLSRRYAGTGLGLPLAKSFSELHGGSLDLVSRPGEGTTVTVRIP 584



 Score = 41.9 bits (97), Expect = 0.42,   Method: Composition-based stats.
 Identities = 15/207 (7%), Positives = 55/207 (26%), Gaps = 7/207 (3%)

Query: 38  KSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPR-TVRFTWNIDAHGYLK 96
            ++                + Q  +  T     E+   +    R      W+ +      
Sbjct: 169 PARLRARVKALEIAQREAQRTQRVLLATTRALRESEERYALAMRGPNEGLWDWNPITKEL 228

Query: 97  EISEELPKTIGNYAFKM--IGMRLCDVSDILHIDPNNH-IGDLLKRQNTWYGKTTLWPIE 153
            +S  L   +G  +  +        ++      D     +   LK ++    +      +
Sbjct: 229 YLSARLLSILGFESDTLRTTSHEWLELVHPEDRDRYQATLVRHLKGEDAH-FECEYRVTD 287

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
               +  +    L +   +      R  G +      +  +   +  +++       +  
Sbjct: 288 RDGRWRWVLARGLAVLDADG--VATRMVGSIGDVTERHAYQRALQEANEQLEQRVVERTR 345

Query: 214 HSSVEKEKYDIFSQQSPPPHLRMKNKV 240
              + + + +  ++        M +++
Sbjct: 346 ELDLARCQAEEANRCKSEFLANMSHEL 372


>gi|25010797|ref|NP_735192.1| sensory box histidine kinase [Streptococcus agalactiae NEM316]
 gi|76787924|ref|YP_329468.1| sensory box histidine kinase [Streptococcus agalactiae A909]
 gi|76798188|ref|ZP_00780439.1| sensory box histidine kinase [Streptococcus agalactiae 18RS21]
 gi|77410782|ref|ZP_00787140.1| sensory box histidine kinase [Streptococcus agalactiae CJB111]
 gi|77413072|ref|ZP_00789273.1| sensory box histidine kinase [Streptococcus agalactiae 515]
 gi|23095151|emb|CAD46386.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76562981|gb|ABA45565.1| sensory box histidine kinase [Streptococcus agalactiae A909]
 gi|76586451|gb|EAO62958.1| sensory box histidine kinase [Streptococcus agalactiae 18RS21]
 gi|77160865|gb|EAO71975.1| sensory box histidine kinase [Streptococcus agalactiae 515]
 gi|77163161|gb|EAO74114.1| sensory box histidine kinase [Streptococcus agalactiae CJB111]
 gi|319744747|gb|EFV97089.1| sensor histidine kinase VicK [Streptococcus agalactiae ATCC 13813]
          Length = 449

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 87/415 (20%), Positives = 170/415 (40%), Gaps = 36/415 (8%)

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT-RINKRKMEIEVMQLCSILEATSD 463
           W   + +A  +          + +       +  D  R+    +E E  +L SIL   +D
Sbjct: 45  WKVRDLIAGNYSDSILIQGDADLVELGESLNDLSDVFRMAHDNLEQEKNRLASILTYMTD 104

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
           G+   +R G I+  N    + F    ++ L       L   +P      +         +
Sbjct: 105 GVLATDRSGKIVMINETAQQQFNLAYDEALSMNIVDMLGSGSPYSFQDLV--------SK 156

Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAE 579
           T E +     +  + ++LRI        S +        HD +E ++E+ +         
Sbjct: 157 TPEVVLNRRDENGEFVTLRIRFALNRRESGFISGLVAVSHDATEQEKEERERRL------ 210

Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639
                   F++ VSHE+RTPLT++  + E +     G L       +        N ++ 
Sbjct: 211 --------FVSNVSHELRTPLTSVKSYLEAL---DEGALNEEVAPSFIKVSLDETNRMMR 259

Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI-----LIRTSFANNI 694
           +++DLL +S+I++   +L  E  +    ++  ++      N+K +      I   +    
Sbjct: 260 MISDLLSLSRIDNEVTHLDVEMTNFTAFMTSILNRFDQIRNQKTVTGKVYEIVRDYPLKS 319

Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELE 754
             +  D   + Q+  NIL+NA+ ++P GG+I ++   T  + + L + D G+G+   +L 
Sbjct: 320 IWVEIDTDKMTQVIDNILNNAVKYSPDGGKITVNLRTTKTQMI-LSISDQGLGIPKKDLP 378

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
                F ++  ++  +  GTGLGL +AK +V  + G  +  S   KG+   I+ P
Sbjct: 379 LIFDRFYRVDKARSRQQGGTGLGLSIAKEIVKQHKGFIWAKSEYGKGSTFTIVLP 433


>gi|281358214|ref|ZP_06244697.1| multi-sensor hybrid histidine kinase [Victivallis vadensis ATCC
           BAA-548]
 gi|281315304|gb|EFA99334.1| multi-sensor hybrid histidine kinase [Victivallis vadensis ATCC
           BAA-548]
          Length = 1131

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 125/644 (19%), Positives = 233/644 (36%), Gaps = 36/644 (5%)

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY 246
            R  N   AL +R     + + +     +  +    D+         + +K       E 
Sbjct: 359 RRQRNRYAALNRRKLALLNAITDGI-IETDADGVVLDMNPAAEAVTGISLKEAAGMSVEM 417

Query: 247 YAHKDDVLKTEKYPLLTSEES------SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF 300
                        P L +E        S  E  +    +  ++        L     +S 
Sbjct: 418 LLPLFSSKDHAPLPSLVAEALHSDRLVSAGEHAELRRRDGGRFHVSLSAVRLCRKKTDST 477

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-----FVYSHGNLFYANPSFLLLTKYK 355
             +      + + Y  + E      + +          F+            +  +    
Sbjct: 478 CSVLLVLRDTTAEYRQKRELAMRNGMLELAARISGLSCFICRSDGTGIELARYQPIW--- 534

Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
             +D         +          A + +   R     ++  +  +          +M  
Sbjct: 535 PKEDGRPVPPEKFMFAEDAEELRRAWQELRSNRRKEVSLSFRSNYYGET----RYYSMRV 590

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE--GI 473
           +P +            GI  +    R+N++K +     L  IL+    GI + N +  G 
Sbjct: 591 VPSKDFYSTGH-RRYFGILQDFTHVRMNEQKYQNTWSLLQLILDNLPCGIFVKNPDDGGR 649

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
            +  NR    + G     I  K      +    +         +        +       
Sbjct: 650 YVLCNRMFGSIVGVDSRAIAGKTDWELFKAAGEAARFSADDREVIETGASIDKTELYT-G 708

Query: 534 KEEKLLSLRIIIKKLPFSSC---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
            +  + + R I  +L              DI    + + KLS A + A   +  KS FLA
Sbjct: 709 ADGVVRTSRTIKSRLIQQDGSRLLVGLSIDIFRQVEVERKLSRALEQARLAAQAKSTFLA 768

Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650
            +SHEIRTPL A+IG S+++++ R   + + + + ++  I+ SG  +L ++ND+LD+SKI
Sbjct: 769 TMSHEIRTPLNAVIGLSDLLRSPR---ISDAQRVAFSEAINTSGKALLQLINDVLDLSKI 825

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIAL 709
           E+ KM L   PVSL + +SE   +    A +K +          P ++L D   V+Q+ L
Sbjct: 826 EAMKMELRPGPVSLTQLLSEVHQIFAQSAADKGLEFEFVPPEPEPPKLLLDEVRVRQVLL 885

Query: 710 NILSNAIHFTPSGGQIIISTT----HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           N++ NA+ FT  G  + +        T + EV++ V D+GVG+    +    +PF Q  N
Sbjct: 886 NLIGNAVKFTTRGF-VKLECALGFNRTPDCEVLITVADSGVGIDPEFMAHLFEPFRQAVN 944

Query: 766 SQQIRG-EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           +       G+GLGL ++K +++   G   + S+   GT   +  
Sbjct: 945 ADSRSFEGGSGLGLAISKRLIEQMNGTLDVESSLGVGTTFTVRL 988



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 40/398 (10%), Positives = 94/398 (23%), Gaps = 25/398 (6%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL----HIDPNNHIGDLLKRQNTW 143
             DA G + +++       G    +  GM +  +  +     H    + + + L      
Sbjct: 385 ETDADGVVLDMNPAAEAVTGISLKEAAGMSVEMLLPLFSSKDHAPLPSLVAEALHSDRLV 444

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                            + L+A+ +  R +  S      ++     +   +      +  
Sbjct: 445 SAGEHAELRRRDGGRFHVSLSAVRLC-RKKTDSTCSVLLVLRDTTAEYRQKRELAMRNGM 503

Query: 204 FSHLHEIK--KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
                 I                 ++  P         V      +A   + L+     L
Sbjct: 504 LELAARISGLSCFICRSDGTGIELARYQPIWPKEDGRPVPPEKFMFAEDAEELRRAWQEL 563

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH----PSLSAYFDE 317
            ++    +      +     +Y   +   +    S     Y                +  
Sbjct: 564 RSNRRKEVSLSFRSNYYGETRYYSMRVVPSKDFYSTGHRRYFGILQDFTHVRMNEQKYQN 623

Query: 318 GENLTPETVDKCPIPFFV---YSHGNLFYANPSFLLLTKYKSVD-------DIEIAGGLS 367
             +L    +D  P   FV      G     N  F  +    S         ++  A G +
Sbjct: 624 TWSLLQLILDNLPCGIFVKNPDDGGRYVLCNRMFGSIVGVDSRAIAGKTDWELFKAAGEA 683

Query: 368 TLLDAPKLS----DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
               A          +  K  +   +D     +      +     + L +          
Sbjct: 684 ARFSADDREVIETGASIDKTELYTGADGVVRTSRTIKSRLIQQDGSRLLVGLSIDIFRQV 743

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
             E      +E   +  +     +     ++ + L A 
Sbjct: 744 EVERKLSRALEQARLAAQAKSTFLATMSHEIRTPLNAV 781



 Score = 39.2 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 26/253 (10%), Positives = 66/253 (26%), Gaps = 4/253 (1%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV--SDILHIDPNNHIGDLLKRQNT 142
           F  N D  G     +      +G  +  + G    ++  +       +    ++++   +
Sbjct: 640 FVKNPDDGGRYVLCNRMFGSIVGVDSRAIAGKTDWELFKAAGEAARFSADDREVIETGAS 699

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFR--GFGIVHVNRVDNDPRALGKRL 200
                     +G         + L     +R   G     F  V V R  +      +  
Sbjct: 700 IDKTELYTGADGVVRTSRTIKSRLIQQDGSRLLVGLSIDIFRQVEVERKLSRALEQARLA 759

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
            +  S                    S     P +    +V+           +L+     
Sbjct: 760 AQAKSTFLATMSHEIRTPLNAVIGLSDLLRSPRISDAQRVAFSEAINTSGKALLQLINDV 819

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
           L  S+  ++  +     ++L Q   + +    Q+ + +  E+      P       +   
Sbjct: 820 LDLSKIEAMKMELRPGPVSLTQLLSEVHQIFAQSAADKGLEFEFVPPEPEPPKLLLDEVR 879

Query: 321 LTPETVDKCPIPF 333
           +    ++      
Sbjct: 880 VRQVLLNLIGNAV 892


>gi|187922203|ref|YP_001893845.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia phytofirmans
           PsJN]
 gi|187713397|gb|ACD14621.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia phytofirmans
           PsJN]
          Length = 657

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 107/515 (20%), Positives = 199/515 (38%), Gaps = 18/515 (3%)

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYK-SVDDIEIAGG 365
           NHP++            +     P     +          S   L +     D +     
Sbjct: 3   NHPAVRTESRTLLAQARDV--TLPETVERHLAARGLLPVRSLEQLPQPPCEADVLLTPSS 60

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
               L AP+    +A    +      T    +        +      +     E      
Sbjct: 61  WMRELAAPQRERLSAYGRAVGAWIALTDTPVAFDESLNLLDLGVDHFLPVPTLEDQWGAL 120

Query: 426 ENMPQNGIEPEDVDTRINK---RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
            +  ++ +       R        +     +    L+   +G+ +   +GII+  +    
Sbjct: 121 IDGLRSRMPLRRAGPRAAPMPCETLGEGEARFRFFLDNVEEGVVVC-ADGIIVDVSDRWL 179

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
           +LF    E+ +  P   +       +    + E       +T E   L          +R
Sbjct: 180 ELFRCRREEAIGHPVLDYTSPRVVPMARQLIEE----RWAETYESEMLRRDGTTFPAIVR 235

Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
              ++         T+ DI+  K+ +  L  AK  AE+    KS+FL+ +SHE+RTPL A
Sbjct: 236 GRDQRFGGRELRLTTILDITRQKESEQALKLAKAEAERACHAKSEFLSSMSHELRTPLNA 295

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           I+GF+++++            ++    I ++G+ +L ++N++LD++ IESGK  L  E V
Sbjct: 296 ILGFAQILEMDDGLSTD---QLDSIAEILKAGHHLLGLINEVLDLASIESGKTTLSLETV 352

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
            +   + +   LVQ  A  + I +            AD + +KQI LN+LSN I +    
Sbjct: 353 DVSTLIRDCAQLVQPLATSREIDLHLEIPERAAA-CADNQRLKQIVLNLLSNGIKYNHPS 411

Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
           G++ +         + + V DTG G+    L +  +PF ++  +     EGTG+GL + +
Sbjct: 412 GEVRVIVEP-DGSRLRIAVADTGAGICAERLGELFQPFSRL-GADHASVEGTGIGLVITR 469

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPLYD-TSHP 816
            + +A  G+  + S P KG+   +  PL   +S P
Sbjct: 470 KLTEAMGGRIGVESEPGKGSRFWVELPLAQLSSQP 504



 Score = 39.2 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 30/256 (11%), Positives = 67/256 (26%), Gaps = 22/256 (8%)

Query: 76  FDPIPRTVRFTWNID---------AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH 126
                   RF + +D         A G + ++S+   +       + IG  + D +    
Sbjct: 143 ETLGEGEARFRFFLDNVEEGVVVCADGIIVDVSDRWLELFRCRREEAIGHPVLDYTSPRV 202

Query: 127 IDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFR-GFGIVH 185
           +        L++ +     ++ +   +GT     +         R++ F G       + 
Sbjct: 203 V---PMARQLIEERWAETYESEMLRRDGTTFPAIV-------RGRDQRFGGRELRLTTIL 252

Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE 245
                 +     K    +       K    S    +              ++      T+
Sbjct: 253 DITRQKESEQALKLAKAEAERACHAKSEFLSSMSHELRTPLNAILGFAQILEMDDGLSTD 312

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
                 ++LK   + L    E       +     L+  T      TL  +  +  + L+ 
Sbjct: 313 QLDSIAEILKAGHHLLGLINEVLDLASIESGKTTLSLETVD--VSTLIRDCAQLVQPLAT 370

Query: 306 RNHPSLSAYFDEGENL 321
                L     E    
Sbjct: 371 SREIDLHLEIPERAAA 386


>gi|77408345|ref|ZP_00785086.1| sensory box histidine kinase [Streptococcus agalactiae COH1]
 gi|77173026|gb|EAO76154.1| sensory box histidine kinase [Streptococcus agalactiae COH1]
          Length = 449

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 88/428 (20%), Positives = 173/428 (40%), Gaps = 36/428 (8%)

Query: 392 TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT-RINKRKMEIE 450
                S  +  + W   + +A  +          + +       +  D  R+    +E E
Sbjct: 32  RDFKMSKDIRLLNWKVRDLIAGNYSDSILIQGDADLVELGESLNDLSDVFRMAHDNLEQE 91

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
             +L SIL   +DG+   +R G I+  N    + F    ++ L       L   +P    
Sbjct: 92  KNRLASILTYMTDGVLATDRSGKIVMINETAQQQFNLAYDEALSMNIVDMLGSGSPYSFQ 151

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQ 566
             +         +T E +     +  + ++LRI        S +        HD +E ++
Sbjct: 152 DLV--------SKTPEVVLNRRDENGEFVTLRIRFALNRRESGFISGLVAVSHDATEQEK 203

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
           E+ +                 F++ VSHE+RTPLT++  + E +     G L       +
Sbjct: 204 EERERRL--------------FVSNVSHELRTPLTSVKSYLEAL---DEGALNEEVAPSF 246

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI-- 684
                   N ++ +++DLL +S+I++   +L  E  +    ++  ++      N+K +  
Sbjct: 247 IKVSLDETNRMMRMISDLLSLSRIDNEVTHLDVEMTNFTAFMTSILNRFDQIRNQKTVTG 306

Query: 685 ---LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
               I   +      +  D   + Q+  NIL+NA+ ++P GG+I ++   T  + + L +
Sbjct: 307 KVYEIVRDYPLKSIWVEIDTDKMTQVIDNILNNAVKYSPDGGKITVNLRTTKTQMI-LSI 365

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            D G+G+   +L      F ++  ++  +  GTGLGL +AK +V  + G  +  S   KG
Sbjct: 366 SDQGLGIPKKDLPLIFDRFYRVDKARSRQQGGTGLGLSIAKEIVKQHKGFIWAKSEYGKG 425

Query: 802 TLIEIIFP 809
           +   I+ P
Sbjct: 426 STFTIVLP 433


>gi|91203081|emb|CAJ72720.1| similar to two component histidine kinase phoR [Candidatus Kuenenia
           stuttgartiensis]
          Length = 595

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 78/369 (21%), Positives = 168/369 (45%), Gaps = 21/369 (5%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +  ++ +     +L +I+   +D I +++ +  IL  N      FG       R      
Sbjct: 235 QAQQQIISDSEKRLTAIINNMNDAIIVVDLQERILLINNTAMTFFGIAEITPGRDYLWER 294

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
           +   T  ++   + + +  +   T E       K+       + ++K   +    +  HD
Sbjct: 295 IRNETLQIL---VKQTMKTNTGFTTEIEYASPKKKLLQTQFSL-LQKDNNTIGILIVFHD 350

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I++ ++ +N               + +F+A VSHE+RTPLT+I G+ E +        G+
Sbjct: 351 ITDLRKLENT--------------RKEFVANVSHELRTPLTSIRGYVETLLENYAAGGGH 396

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
                    I +    + +++ D+L++SK+E+ ++ +    +++ E + + +   + +  
Sbjct: 397 --TYNSLKVIMKHTQRLDNLIKDILELSKLETNELKMELHELNIYECIEDILHTYKEHCE 454

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
           EK+   R   + N+P + ++   ++Q+  N+L NAI +T   G I +S +      + + 
Sbjct: 455 EKKQSFRLHISQNLPTVESNEYLLRQLLTNLLDNAIKYTHESGDIRLSISPAEE-TIQIE 513

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V DTG+G+ +  + +  + F +I  ++     GTGLGL + K +V+ + G   + ST  K
Sbjct: 514 VSDTGIGIPHEHIPRIFERFYRIDPARSREMGGTGLGLSIVKHIVNLHNGAIKLKSTVGK 573

Query: 801 GTLIEIIFP 809
           G+   +I P
Sbjct: 574 GSTFTVILP 582


>gi|307726955|ref|YP_003910168.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1003]
 gi|307587480|gb|ADN60877.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1003]
          Length = 882

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 109/754 (14%), Positives = 232/754 (30%), Gaps = 54/754 (7%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTW 143
             W  +A G +   +    K +GN       +        L +    +     L    + 
Sbjct: 13  LVWTAEARGIVTYANIACRKYLGNPFAPNTTIHWDQFVLELDVKKVLDAWRKALTAGESA 72

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                L   +G   Y    L   PI+   R   G  G  +              +  +++
Sbjct: 73  KVNARLKRFDGR--YRWHKLRIQPIFDDARTVCGACGIAM--DIDDFVQAGEAYEVGERR 128

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQ----QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
                +  +  +                       R + +V     +    +        
Sbjct: 129 LRFALDAARVGAWEWDMGSRTARISAQLAQIYGLERHEAEVPLQWLFDRIPESYRAWFAR 188

Query: 260 PLLTSEESSLPEQEDF--HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS----LSA 313
            L       +P + DF     +  +   +    T                  +       
Sbjct: 189 ELTGRLHQCVPFELDFPIELEDGRRLWLRTRGETDCGAGTAIERVFGVTYDITEQHDAQT 248

Query: 314 YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
             +  E      V+      ++                  +   + +    G   L   P
Sbjct: 249 ERERSEQRYRALVEASSELTWIADAAG---HTKQLGNWQSFAPEEGLSEGCGWLEL-VHP 304

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
              +        + +S+       +    ++    +   M+       +          +
Sbjct: 305 DDQECARDNWSTIVKSEMPG----SMTFRLRRRDGSWRTMSARAAPLRDDDGTLREWFCM 360

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEA--TSDGIAIINRE----GIILSTNRAVSKLFGY 487
             +  D R     +E   ++L   + A   + G   ++        + +  R ++   G 
Sbjct: 361 ATDVTDERAAAAALEERNLRLQVAMRAAKMTIGYLALDSWTVCWDSVEAAPRGLAGPTGL 420

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL-RQTLEKITLGSTKEEKLLSLRIIIK 546
           P +  L++     +  +  + ++  +  +       + LE   L          L+    
Sbjct: 421 PYDAALQR-----VHSDDRAAVDAAMRRVALTGEFDKPLEFRILMR---GHEHWLQSQAV 472

Query: 547 KLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
               +         +  DI++ K  +  L        +    K +FLA ++HE+R PL  
Sbjct: 473 LQRDADGNPWRVIASAVDITQRKTLELAL-------RETDRRKDEFLAMLAHELRNPLAP 525

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           +     +++ ++   + +   +   +   R  + +  +V+DLL++S+I  G++ L  EPV
Sbjct: 526 MRNAIALLRREKEAGMKSCELVGMLS---RQVDHMAQLVDDLLEVSRITHGRIVLRREPV 582

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
            L  AV  A+  V   A  +   +  +       + AD   + QI +N+L+NA  +T  G
Sbjct: 583 LLGTAVYGALETVSSMAASRSQHLTVTLPPAPVWLHADPLRLSQILVNVLNNACKYTDPG 642

Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
           G + + T         + + D G G+++  L      F Q   +      G G+GL L K
Sbjct: 643 GSVCV-TALADERFATVTIEDNGSGISSDLLPHIFDLFAQGERTLDRAHGGLGIGLSLVK 701

Query: 783 AMVDANMGKFYIFS-TPAKGTLIEIIFPLYDTSH 815
            +V+ + G   I S  P +G  + I  PL     
Sbjct: 702 KLVELHGGGIDIASPGPGRGATVSIRLPLSHAPE 735


>gi|303246847|ref|ZP_07333124.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio
           fructosovorans JJ]
 gi|302491864|gb|EFL51744.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio
           fructosovorans JJ]
          Length = 668

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 89/490 (18%), Positives = 179/490 (36%), Gaps = 36/490 (7%)

Query: 336 YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIA 395
            +   L + +P  L    Y+S + +        L   P        +  +L       + 
Sbjct: 47  DAADRLTWVSPGALRQLGYESAEALVGRKAGEALYHDPG------QRQALLTALSSGVVP 100

Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
                  ++    +SL +      +A    E                 +  +   + ++ 
Sbjct: 101 MCQEEF-LRRADGSSLTVRTRAAPRAQGGMEAHCLV-----LTGEIEARISLAKALREME 154

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
            + +    G+  ++R   I   N   +++FG+P  D++    +             Y   
Sbjct: 155 IVFDNALVGMI-LSRNHRIEKVNARGAEVFGHPPSDLVGTDASFLFATPETYADF-YRAS 212

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRI---IIKKLPFSSCYSLTMHDISEWKQEKNKLS 572
              L               +   + +R     +              D+S  ++ + +L 
Sbjct: 213 TKDLRESGMHSGEYRMRRADGATIVVRSHGKSLSPEAPEEGVVWAFDDVSAQRRLEAELR 272

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
            +K+ AE  S  K+ FLA +SHE+RTPL  I+G ++++ +     + +    EY   I +
Sbjct: 273 ASKQAAEAASVAKTQFLANISHELRTPLNGIMGLTQLMLDG----VADDETQEYLGIIRQ 328

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
           S ++++ IV DLLD+S +E+G++ L          +   +      +  +       F  
Sbjct: 329 SASILMHIVGDLLDLSNVEAGRLMLVMREFDPQAELLPLLRNFSTQSMLRPFSFGYHFDP 388

Query: 693 NIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-------------EVI 738
            +P R++ D   +KQI +N++ NA  +T  G  + +      N               + 
Sbjct: 389 LLPARLIGDPNRIKQICINLIDNAFKYTKKG-TVSVRIGLWENPGNEPPPDVAPERIRLH 447

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           + V DTGVG+         +PFG   +    +  G GLGL +A+ +     G   + S P
Sbjct: 448 IAVSDTGVGIEPSRQSAIFEPFGIGEDYLTKKYSGAGLGLTVARRLAGMMGGDITVESEP 507

Query: 799 AKGTLIEIIF 808
            +G+   +  
Sbjct: 508 GQGSTFYLTL 517



 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/294 (10%), Positives = 76/294 (25%), Gaps = 17/294 (5%)

Query: 43  NPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEEL 102
               D+      T Q     + +  L +   FV      +    +  DA   L  +S   
Sbjct: 4   PRQGDTDAVGGKTAQPAALRAFSTALCAFQDFVHGQTVLS----YRTDAADRLTWVSPGA 59

Query: 103 PKTIGN-YAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPI 161
            + +G   A  ++G +  +            +  L         +  L   +G++L V  
Sbjct: 60  LRQLGYESAEALVGRKAGEALYHDPGQRQALLTALSSGVVPMCQEEFLRRADGSSLTVR- 118

Query: 162 DLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEK 221
                   +  R   G     +V          +L K L +          G       +
Sbjct: 119 ------TRAAPRAQGGMEAHCLVLTG-EIEARISLAKALREMEIVFDNALVGMILSRNHR 171

Query: 222 YDIFSQQSPPPHLRMKNKVSSLTEY--YAHKDDVLKTEKYPLLTSEESSLPEQE-DFHTI 278
            +  + +         + +        +A  +      +       ES +   E      
Sbjct: 172 IEKVNARGAEVFGHPPSDLVGTDASFLFATPETYADFYRASTKDLRESGMHSGEYRMRRA 231

Query: 279 NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP 332
           +      + +  +L   + E     +  +  S     +     + +  +   + 
Sbjct: 232 DGATIVVRSHGKSLSPEAPEEGVVWA-FDDVSAQRRLEAELRASKQAAEAASVA 284


>gi|148256630|ref|YP_001241215.1| PAS/PAC sensor hybrid histidine kinase [Bradyrhizobium sp. BTAi1]
 gi|146408803|gb|ABQ37309.1| PAS/PAC sensor hybrid histidine kinase [Bradyrhizobium sp. BTAi1]
          Length = 936

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 90/521 (17%), Positives = 180/521 (34%), Gaps = 41/521 (7%)

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEI 362
            HR   +  A+F   E L    V+        +  HG +   N +   L  Y   + +  
Sbjct: 300 QHRQSQNERAHFIARERLLSAVVESSNDAIITLTLHGKITSWNRAAEQLFGYDGSEALGS 359

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
             GL        +      +   L                 +    + L ++       +
Sbjct: 360 DIGL-------IVPTERRGEVDRLLERIGRGEKIEHHETMRRHKDGHELDVSLSVSPVLD 412

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
                +  + +  +  +++  +  +  E  +   I E + D I I + +G ++  + + +
Sbjct: 413 ARGTVIGASKVARDITESKRTRHALSRETEERRRIFETSQDLILIADSQGTLIQVSPSAN 472

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
            + GY  E+++ +    F+           +  +                 KE + + L 
Sbjct: 473 AILGYRPEEMVGRDAGDFVYPPELESFRSQM--LACRGGHDIHNFEAQFLHKEGRAVILN 530

Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
            +         +     D++E +  + +   A+K+              V+H+    LT 
Sbjct: 531 WMASWSEPVQRHFFIGRDLTEKRAAEAQFRQAQKM-----EAVGQLTGGVAHDFNNILTV 585

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           I G   ++          P     A  ID S +    +   LL  ++    K  L    +
Sbjct: 586 ITGSIGILAE---SVADRPELASLAKLIDDSADRGARLTQQLLAFAR----KQPLQPADI 638

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
            ++  + E   L++     ++I I    A++    LAD   +    +N+  NA    P G
Sbjct: 639 DVNALLVETADLLRPTL-GEQIEIERILADDPCTALADPDQLATAIVNLALNARDAMPQG 697

Query: 723 GQIIISTTHTS--------------NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
           G++ + T + +               + V++ V DTG G+    L+K   PF     S +
Sbjct: 698 GKLTLETANVALDQDYANANSEVAIGDYVMIAVSDTGCGIPPAYLDKVFDPFF----STK 753

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             G+GTGLGL +    V  + G   I+S    GT I++  P
Sbjct: 754 GVGKGTGLGLSMVFGFVKQSGGHIKIYSEVGHGTSIKLYLP 794



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/319 (10%), Positives = 93/319 (29%), Gaps = 17/319 (5%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR----QNTWYGKT 147
           HG +   +    +  G    + +G    D+  I+  +    +  LL+R    +   + +T
Sbjct: 335 HGKITSWNRAAEQLFGYDGSEALG---SDIGLIVPTERRGEVDRLLERIGRGEKIEHHET 391

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                +G    + + L+  P+        G     +          R    R  ++   +
Sbjct: 392 MRRHKDGH--ELDVSLSVSPVLDARGTVIGASK--VARDITESKRTRHALSRETEERRRI 447

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHL---RMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
            E  +    +   +  +         +   R +  V      + +  + L++ +  +L  
Sbjct: 448 FETSQDLILIADSQGTLIQVSPSANAILGYRPEEMVGRDAGDFVYPPE-LESFRSQMLAC 506

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
                    +   ++         +    +   +   ++        +A     +    E
Sbjct: 507 RGGHDIHNFEAQFLHKEGRAVILNWMASWSEPVQRHFFIGRDLTEKRAAEAQFRQAQKME 566

Query: 325 TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
            V +         +  L     S  +L   +SV D      L+ L+D          + +
Sbjct: 567 AVGQLTGGVAHDFNNILTVITGSIGIL--AESVADRPELASLAKLIDDSADRGARLTQQL 624

Query: 385 MLYRSDRTCIAASARLHTI 403
           + +   +    A   ++ +
Sbjct: 625 LAFARKQPLQPADIDVNAL 643



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/249 (11%), Positives = 64/249 (25%), Gaps = 16/249 (6%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ-NTWYGKTT 148
           D+ G L ++S      +G    +M+G    D      ++         +   +    +  
Sbjct: 459 DSQGTLIQVSPSANAILGYRPEEMVGRDAGDFVYPPELESFRSQMLACRGGHDIHNFEAQ 518

Query: 149 LWPIEGTNLYV-PIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
               EG  + +  +   + P+          R F I           A  +   +K   +
Sbjct: 519 FLHKEGRAVILNWMASWSEPVQ---------RHFFIGRDLTEKRAAEAQFR-QAQKMEAV 568

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKN--KVSSLTEYYAHKDDVLKTEKYPLLTSE 265
            ++  G +        + +         + +  +++SL +      D        LL   
Sbjct: 569 GQLTGGVAHDFNNILTVITGSIGILAESVADRPELASLAKLIDDSADRGARLTQQLLAFA 628

Query: 266 E--SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
                 P   D + + +      +     Q   +                      NL  
Sbjct: 629 RKQPLQPADIDVNALLVETADLLRPTLGEQIEIERILADDPCTALADPDQLATAIVNLAL 688

Query: 324 ETVDKCPIP 332
              D  P  
Sbjct: 689 NARDAMPQG 697


>gi|309790646|ref|ZP_07685199.1| histidine kinase [Oscillochloris trichoides DG6]
 gi|308227312|gb|EFO80987.1| histidine kinase [Oscillochloris trichoides DG6]
          Length = 717

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 108/619 (17%), Positives = 232/619 (37%), Gaps = 63/619 (10%)

Query: 218 EKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHT 277
            ++  D+ +      H  +    +++       +  L+TE+     +  +   +      
Sbjct: 133 AEDAADVQAVSDALIHGLVPQLAAAIAAEGTQPEYRLRTERSSDTPTGITLRSDD----- 187

Query: 278 INLNQYTKKQYFGTLQNNSKESFEYLSH-RNHPSLSAYFDEGENLTPETVDKCPIPFFVY 336
                   KQ    L++N   + +           +      E      VD       ++
Sbjct: 188 --------KQQLLALRSNLDAAIDLHEMLSLLLRQAMETSGAEAGAVALVDHEQDELVLH 239

Query: 337 SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA 396
           +           L     +         G + +     L  +  ++P +   S       
Sbjct: 240 TFEGFSAEVRPTLQSDPRQRWSIHNGLAGQAAISQRALLVRDVTLEPGLHAASAGLHAEL 299

Query: 397 SARLHTIQWNRENSLAMTFI----PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
           +A    I  N   +  +            ++              +   +  ++     +
Sbjct: 300 AA---PIMINNATAAVLILSSPRSDAFGEDELSFVRALCARAALPLSRALRYQEAIENAL 356

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE----------DILRKPFTVFLE 502
            L  +      G+A+++  G +L +N A    +G              D++        +
Sbjct: 357 YLGQVFSNLPTGLALLDINGKVLRSNPAWDLHWGLHGVARHETFHVTLDLIEHLLPRLQD 416

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
            +  +     +      DL  T+  +      E + +  R    ++         + D++
Sbjct: 417 PHKLTTFFEQMQRTPGNDLLTTVHLMNPRQDLELRSVPTRDSKDRIT---GRLWAVSDVT 473

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
             +              +    K++F++ VSHE+RTPLT+I+G++E+++ + F P     
Sbjct: 474 RER--------------EADRLKNEFVSIVSHELRTPLTSILGYTELLRTREFAP---EE 516

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             ++   +      +  +V DLL +S+IE+GK+ L+   +SL   V E  + +     + 
Sbjct: 517 RQQFITTVFNEAERLSQLVEDLLGMSRIEAGKVKLNRWVISLTNIVYELTTQLNTSLIKH 576

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS--------- 733
           R+LI       IP I AD   VKQI  N+L+NAI ++P+GG+I ++              
Sbjct: 577 RLLI--DITGEIPPIYADRDKVKQIIFNLLTNAIKYSPNGGEIQLTIREAQKRDLPGDHP 634

Query: 734 -NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
             + +++ VRD G+GM   +L +  + F ++ N+   +  GTGLGL +++A+V+ + G+ 
Sbjct: 635 LGQWIVVSVRDEGIGMAPEDLPRIWERFYRVDNTNTRKIGGTGLGLSISRALVELHGGRI 694

Query: 793 YIFSTPAKGTLIEIIFPLY 811
           ++ ST  +G+      P+ 
Sbjct: 695 WVTSTLGRGSRFFFTLPVA 713


>gi|209523399|ref|ZP_03271954.1| histidine kinase [Arthrospira maxima CS-328]
 gi|209496141|gb|EDZ96441.1| histidine kinase [Arthrospira maxima CS-328]
          Length = 728

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 126/577 (21%), Positives = 222/577 (38%), Gaps = 89/577 (15%)

Query: 315 FDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
             + ++     +++      ++     L   NP    +    SVD +     L  +    
Sbjct: 3   IQQLKDQQILILNQIDQAIALFDSSDRLILFNPQLAAIWGI-SVDQLAAQPSLDDICAEI 61

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
                         R              IQ + +  L +        +Q   +  +   
Sbjct: 62  TSKKLWLKPDWEHLRQTLRDCVRGEISFCIQQHNQIYLEVH-------SQTTASGGRLLT 114

Query: 434 EPEDVDTRINKRKMEIEVMQLCSIL---------EATSDGIAIINREGIILSTNRAVSK- 483
             +  D R  +  +  EV +L  +L         +   D IA      ++ +TN A    
Sbjct: 115 FRDITDHRNTQLSLNTEVRRLRFLLGLNERLQDSDNL-DNIAQFALNYLVNTTNAAFGDV 173

Query: 484 --LFGYPVEDILRK---PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEK 537
             + G     I        +              +   LS  +      +  +  T E +
Sbjct: 174 KVILGEGENRITGMLGNQISGHFVATYGEPAVAEMKAALSQGIPYGEGLLWDVVRTGEPR 233

Query: 538 LLSLRII-----------------IKKLPFSSC-YSLTM----HDIS------------- 562
            +                      I  +P ++      +     D++             
Sbjct: 234 FVRDYANHPKAFSPFRHPGIGQLGIFPIPATNGEIIGVLTLESRDLTKMQEYPQLDMLFA 293

Query: 563 ---------EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
                    E  + + +L  + +  E+ S  KS+FLA +SHE+RTPL +++GF++++K Q
Sbjct: 294 ACRTLGTAIERAEAQERLRQSNEKLERASQLKSEFLASMSHELRTPLNSVLGFADLLKRQ 353

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
             G L N R +    +I++SG  +L ++ND+LD+SKIESGK  L+ E V + E  SE + 
Sbjct: 354 NSGTL-NSRQLNQVQFIEKSGWHLLHLINDILDLSKIESGKTELNLESVDIHELCSECLK 412

Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-- 731
           +VQ  A++K + +       I ++  D R V+QI +N+LSNAI FTP GG++ +S     
Sbjct: 413 MVQPRADKKCLALSLESDYRITQVWLDRRRVRQIMINLLSNAIKFTPEGGRVRLSGHLAY 472

Query: 732 ----------------TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
                            S   + L V+D+G+G+         +PF QI +S   R EGTG
Sbjct: 473 GSQIEGDYRPDCSPINDSTPYLCLEVQDSGIGIPQDRWHLLFQPFQQIDSSLTRRHEGTG 532

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
           LGL L K + + + G   + S   +G+   +  PL +
Sbjct: 533 LGLLLTKRLAELHGGTVSLQSQVNQGSRFRVWLPLTE 569


>gi|303248367|ref|ZP_07334628.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
 gi|302490275|gb|EFL50189.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
          Length = 1178

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 112/689 (16%), Positives = 222/689 (32%), Gaps = 80/689 (11%)

Query: 185 HVNRVDNDPRALGKRLDKKFSHLH------EIKKGHSSVEKEKYDIFSQQSPPPHLRMKN 238
            + R   +  A  +R    F            + G+    +    ++   +P    R   
Sbjct: 227 RLGREKAEVEARERRYRGSFHSAPLGMFHSTHEGGYLDANQALATLYGYDNPDALRRRVK 286

Query: 239 KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE 298
            ++      A + ++L      LL         +      +    + ++    +  +  E
Sbjct: 287 DIARQIYDDAARREILTR----LLAEHGHVSGFEATVRRRDGTLVSTRRDVRAVTGSEGE 342

Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSV 357
              Y       +      +        +         V + G   + N +++     +  
Sbjct: 343 ILHYEGFVQDATALDNAGQYLRRYVRIIAASSDMVALVDTDGRYLFVNDAYVRAFGRERE 402

Query: 358 DDIEIAGG--LSTLLDAPKLSDNNA---------IKPVMLYRSDRTCIAASARLHTIQWN 406
           D +    G  L        ++   A          +      +       S        +
Sbjct: 403 DILGRRIGDFLGHAFYEATVAPQLAKCLSGTPVMYETWTELPALGRRY-LSVHFAPWLED 461

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
            +  +  +     +     E + ++      +               +  +      GI 
Sbjct: 462 DKPCVVTSVRDMTETRLAVEELRESEKTTSILYRV---SSAVASEEDMQVLFHTIH-GIL 517

Query: 467 --IINREGIILSTNRAVSKLFGY----------PVEDILRKPFTVFLEQNTPSVMNHYLT 514
             +++ +   ++          Y          P      K     L ++  S       
Sbjct: 518 GEVVDADEFFIALVDQKHDRLEYVYHVSANEPAPPPLEHVKSLVTPLTRDNFSDFKGADA 577

Query: 515 EILSLDLRQTLEKITLGSTKEEKL-------LSLRIIIKKLPFSSCYSLTMH--DIS--- 562
            +  +     L     G              + L + I+           +H  D +   
Sbjct: 578 LVEVMRTAHPLRVTRRGMRLSGITCSRRTPEVWLGVPIRVRQEVLGVMAVLHYTDATRYG 637

Query: 563 ------------------EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
                             E ++  + L  AK+ A++ +  KS FLA +SHEIRTP+ AI+
Sbjct: 638 RKDAELLLSVAEQLALGVERRRTLDALCAAKEEADRANEAKSRFLASMSHEIRTPMNAIL 697

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           G +EV    R     +    +Y + +  S   +LDI+ND+LD SKIE+ +M +      L
Sbjct: 698 GLTEVTLRTRL----SEEQRDYIDTVRDSARHLLDILNDILDFSKIEACQMTVDVVDYDL 753

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG 723
            E +   I  +   A +K + +       +PR +  D   V+Q+ +N++ NA+ FT +GG
Sbjct: 754 HELLRRVIKTLGGAARDKGLWLTLDIDVGVPRNVRGDPGKVRQVLVNLVGNAVKFTEAGG 813

Query: 724 QIIISTTHTSNEE-----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
            + +              + + V DTG+G+     E   + F Q  NS   R  GTGLGL
Sbjct: 814 -VTVRAALMMPGAGGLPLLGVEVADTGIGIPAEMREAVFESFRQADNSTARRFGGTGLGL 872

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEII 807
            +++ +     G  ++ STP  G+L    
Sbjct: 873 AISRELARLMGGDIHVRSTPGGGSLFTFT 901


>gi|296450077|ref|ZP_06891839.1| probable sensor histidine kinase [Clostridium difficile NAP08]
 gi|296878458|ref|ZP_06902464.1| probable sensor histidine kinase [Clostridium difficile NAP07]
 gi|296261085|gb|EFH07918.1| probable sensor histidine kinase [Clostridium difficile NAP08]
 gi|296430542|gb|EFH16383.1| probable sensor histidine kinase [Clostridium difficile NAP07]
          Length = 912

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 97/515 (18%), Positives = 183/515 (35%), Gaps = 40/515 (7%)

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
                  E    + E ++       V    N  Y N +   + K            +   
Sbjct: 408 EYERKLIEANKRSREFLESIGDGIVVLEGNNKIYVNNACREIFK-------NNLESIDFS 460

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
           L             +     D                  +   +                
Sbjct: 461 LVCKSEESIEKRYVI-----DGEVKYVEMSFSQYTNAGTDKTIIVIR------------- 502

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
                 +    +I++ K+E         ++   DGI ++  +  I   N++   +  +  
Sbjct: 503 ------DTTSRKISQIKLEESQSSYSRFIDILPDGICLLKEDLSINYANKSFLDMLAFTN 556

Query: 490 -EDILRKPFTVFLEQNTPSVM---NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
            +DI      + +  NT   M   ++    +        LE   + S  +   + L  + 
Sbjct: 557 IDDIKDSNIKLLMNANTEEKMKFTDNMAKVLNENRSILLLEYELINSYNDIVEVELSALP 616

Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
             +  +    L + D+   K  +           K    K++F A +SHE++TPL  I  
Sbjct: 617 FAIYNTRYIMLIIKDLVHKKYSEQA-EKELLERFKTDKIKTEFFANMSHELKTPLNVISS 675

Query: 606 ---FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
                +           N     + + + +S   +  ++N+++D++K+ESG   L     
Sbjct: 676 SNQLVDSFYRSEKIKDYNNNIKSHVDLVRQSSYRLQRLINNIIDLTKMESGFYTLKLAKY 735

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
           ++   + +    ++ YA  K I I          I  D   +++I LN+LSN I FT +G
Sbjct: 736 NIVSVIEDLFMNIEEYALRKDIKILFDTELEEINIYIDKVEIERIMLNLLSNCIKFTDNG 795

Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
           G I +S  +  + +VI+ V+DTGVG+   +LE   + F Q+  +     EG+G+GL + K
Sbjct: 796 GWIYVSIHYKID-KVIISVKDTGVGIPQDKLELIFEEFSQVDKTLSRNTEGSGIGLAIVK 854

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
            +V  + G   + S   KGT   I  P+   S  H
Sbjct: 855 NLVSLHGGDIEVISEVNKGTEFLISLPMKGFSSEH 889



 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/265 (14%), Positives = 78/265 (29%), Gaps = 41/265 (15%)

Query: 317 EGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
           + E+    T+D       V+S  G + YAN SF          D              KL
Sbjct: 299 KRESRLQSTLDVAVNSIVVFSKDGEITYANKSFRNTFGDYKEQD--------------KL 344

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
           +D       ++   +   +        I  +        F P   A+Q         +  
Sbjct: 345 TDKIKNFNDLIESINYVFVYEKNVEKLISTSDNKVYQAIFAPLIIASQTE---GVLCVLE 401

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
           +    +  +RK+     +    LE+  DGI ++     I   N A  ++F   +E     
Sbjct: 402 DKTKKKEYERKLIEANKRSREFLESIGDGIVVLEGNNKI-YVNNACREIFKNNLE----- 455

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555
                L   +   +          + R  ++          K + +         +    
Sbjct: 456 SIDFSLVCKSEESI----------EKRYVIDGEV-------KYVEMSFSQYTNAGTDKTI 498

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEK 580
           + + D +  K  + KL  ++    +
Sbjct: 499 IVIRDTTSRKISQIKLEESQSSYSR 523



 Score = 47.3 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 51/151 (33%), Gaps = 25/151 (16%)

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG-YPVED---ILRKPFTVFLE 502
           +     +L S L+   + I + +++G I   N++    FG Y  +D      K F   +E
Sbjct: 297 LIKRESRLQSTLDVAVNSIVVFSKDGEITYANKSFRNTFGDYKEQDKLTDKIKNFNDLIE 356

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS-LRIIIKKLPFSSCYSLTMHDI 561
                 +                    L ST + K+   +   +     +      + D 
Sbjct: 357 SINYVFVYE-------------KNVEKLISTSDNKVYQAIFAPLIIASQTEGVLCVLEDK 403

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
           ++ K+ + KL        + +    +FL  +
Sbjct: 404 TKKKEYERKL-------IEANKRSREFLESI 427


>gi|255656477|ref|ZP_05401886.1| putative sensor histidine kinase [Clostridium difficile QCD-23m63]
          Length = 912

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 97/515 (18%), Positives = 183/515 (35%), Gaps = 40/515 (7%)

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
                  E    + E ++       V    N  Y N +   + K            +   
Sbjct: 408 EYERKLIEANKRSREFLESIGDGIVVLEGNNKIYVNNACREIFK-------NNLESIDFS 460

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
           L             +     D                  +   +                
Sbjct: 461 LVCKSEESIEKRYVI-----DGEVKYVEMSFSQYTNAGTDKTIIVIR------------- 502

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
                 +    +I++ K+E         ++   DGI ++  +  I   N++   +  +  
Sbjct: 503 ------DTTSRKISQIKLEESQSSYSRFIDILPDGICLLKEDLSINYANKSFLDMLAFTN 556

Query: 490 -EDILRKPFTVFLEQNTPSVM---NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
            +DI      + +  NT   M   ++    +        LE   + S  +   + L  + 
Sbjct: 557 IDDIKDSNIKLLMNANTEEKMKFTDNMAKVLNENRSILLLEYELINSYNDIVEVELSALP 616

Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
             +  +    L + D+   K  +           K    K++F A +SHE++TPL  I  
Sbjct: 617 FAIYNTRYIMLIIKDLVHKKYSEQA-EKELLERFKTDKIKTEFFANMSHELKTPLNVISS 675

Query: 606 ---FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
                +           N     + + + +S   +  ++N+++D++K+ESG   L     
Sbjct: 676 SNQLVDSFYRSEKIKDYNNNIKSHVDLVRQSSYRLQRLINNIIDLTKMESGFYTLKLAKY 735

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
           ++   + +    ++ YA  K I I          I  D   +++I LN+LSN I FT +G
Sbjct: 736 NIVSVIEDLFMNIEEYALRKDIKILFDTELEEINIYIDKVEIERIMLNLLSNCIKFTDNG 795

Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
           G I +S  +  + +VI+ V+DTGVG+   +LE   + F Q+  +     EG+G+GL + K
Sbjct: 796 GWIYVSIHYKID-KVIISVKDTGVGIPQDKLELIFEEFSQVDKTLSRNTEGSGIGLAIVK 854

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
            +V  + G   + S   KGT   I  P+   S  H
Sbjct: 855 NLVSLHGGDIEVISEVNKGTEFLISLPMKGFSSEH 889



 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/265 (14%), Positives = 78/265 (29%), Gaps = 41/265 (15%)

Query: 317 EGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
           + E+    T+D       V+S  G + YAN SF          D              KL
Sbjct: 299 KRESRLQSTLDVAVNSIVVFSKDGEITYANKSFRNTFGDYKEQD--------------KL 344

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
           +D       ++   +   +        I  +        F P   A+Q         +  
Sbjct: 345 TDKIKNFNDLIESINYVFVYEKNVEKLISTSDNKVYQAIFAPLIIASQTE---GVLCVLE 401

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
           +    +  +RK+     +    LE+  DGI ++     I   N A  ++F   +E     
Sbjct: 402 DKTKKKEYERKLIEANKRSREFLESIGDGIVVLEGNNKI-YVNNACREIFKNNLE----- 455

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555
                L   +   +          + R  ++          K + +         +    
Sbjct: 456 SIDFSLVCKSEESI----------EKRYVIDGEV-------KYVEMSFSQYTNAGTDKTI 498

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEK 580
           + + D +  K  + KL  ++    +
Sbjct: 499 IVIRDTTSRKISQIKLEESQSSYSR 523



 Score = 47.3 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 51/151 (33%), Gaps = 25/151 (16%)

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG-YPVED---ILRKPFTVFLE 502
           +     +L S L+   + I + +++G I   N++    FG Y  +D      K F   +E
Sbjct: 297 LIKRESRLQSTLDVAVNSIVVFSKDGEITYANKSFRNTFGDYKEQDKLTDKIKNFNDLIE 356

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS-LRIIIKKLPFSSCYSLTMHDI 561
                 +                    L ST + K+   +   +     +      + D 
Sbjct: 357 SINYVFVYE-------------KNVEKLISTSDNKVYQAIFAPLIIASQTEGVLCVLEDK 403

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
           ++ K+ + KL        + +    +FL  +
Sbjct: 404 TKKKEYERKL-------IEANKRSREFLESI 427


>gi|239909020|ref|YP_002955762.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239798887|dbj|BAH77876.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 1199

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 115/706 (16%), Positives = 224/706 (31%), Gaps = 91/706 (12%)

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP-------PPHLRMK 237
                     A     + ++  + E      ++                         + 
Sbjct: 224 READRQRREIADLAEREARYRGVFEHAPLGVALTTPGGRYIEANPALARMYGYASPRELA 283

Query: 238 NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297
             V  +      +    +  +  L  S   S   +      + +    ++    + +   
Sbjct: 284 RAVRDIAGQLYAEPGRREAMEQELADSGAVSR-FEATVRRRDGSLLATRRDVRAIPDAEG 342

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKS 356
               Y       S     +         +         V   G   + N +++    +  
Sbjct: 343 NPLYYEHFVQDSSAMDTAEHSLRRYARIIAASTDMVALVTPDGRYVFVNDAYVAAFGHAR 402

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
              +   G  +T    P   D     P +   +    +     +  +       L++ + 
Sbjct: 403 EAIV---GHHATDFLDPDYFDREVA-PRLASCAAGEVVHFEYWV-ELPARGRRYLSIHYS 457

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV--------------------MQLCS 456
           P+ +     +         +  D R+   ++                            +
Sbjct: 458 PWVEE--GSDERYIVASLRDMTDARLAVDELRESEKTTSILYRVSSAVASEEHMDSLFRA 515

Query: 457 ILEATSDG-------IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
           +    ++        IA+++RE    + N A+    G           +  L   T    
Sbjct: 516 VRNILAEAVDVDEFLIALVDREAD--ALNHALC--IGQDGPPPPIHELSKRLTPLTRENF 571

Query: 510 NHYLTEILSLDLRQTLEKITLGSTK--------EEKL--LSLRIIIKKLPFSSCYSLTMH 559
           N +    + +++ +T   + +              +   + L + I+           MH
Sbjct: 572 NDFRETSVLVEVMRTAHPLLVTRRGMRLTGLTWPGRTPEVWLGVPIRVRQEVLGVMAVMH 631

Query: 560 ------------DI-----------SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
                       D+            E ++  + L  AK+ A++ +  KS FLA +SHEI
Sbjct: 632 FADSGRYGKKEADLLLSVAEQLALGVERRRNLDALRAAKEEADRANQAKSRFLASMSHEI 691

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTP+ AI+G ++V       P       +Y   +  S   +L I+ND+LD SKIE+ +M 
Sbjct: 692 RTPMNAILGLTDVTLRTELTP----EQRDYLETVQDSARHLLGILNDILDFSKIEARQME 747

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNA 715
           L      L E     +  + + A  K + +       +PR +  D   V+QI +N++ NA
Sbjct: 748 LEVVDYDLHELARSVVKTLGVSARTKGLWLSLDITPGVPRHVRGDPGKVRQILVNLVGNA 807

Query: 716 IHFTPSGGQIIISTTHTSNE-----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           + FT +GG + +   H          + L V DTG+G+    L    + F Q  NS   R
Sbjct: 808 VKFTAAGG-VSLRLAHAEAHPDTPPHLELAVADTGIGIEPSLLSAIFESFRQADNSTARR 866

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
             GTGLGL +++ M     G   + S P  G+   +  P      P
Sbjct: 867 YGGTGLGLAISREMAQLMGGDITVESVPGNGSRFVLSIPFEAGRPP 912



 Score =  112 bits (279), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 57/491 (11%), Positives = 134/491 (27%), Gaps = 36/491 (7%)

Query: 104 KTIGNYAFKMIGMRLCDVSDILHID-----PNNHIGDLLKRQNTWYGKTTLWP-IEGTNL 157
           +  G    ++       +     I+     P+  +     R       T   P  +  + 
Sbjct: 19  RLCGLTQARLAERSGVSLEHCNKIERGAAAPSLAVIHAFSRALGVEPATLFLPERDAADE 78

Query: 158 YVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH--S 215
                +    ++ R   F    G G+V +        A  +RL        +        
Sbjct: 79  AGEAGIDWAAVHGRQGLFLWTPGTGMVRLA-------ASLRRLLGYAGKARKEAWDVFFQ 131

Query: 216 SVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL---PEQ 272
           +V        ++ +         +   +  +    +    +    L ++    L      
Sbjct: 132 AVFGSADGEAARAAAALAGLGDRQGLGVRFFRRDGETRRGSLVLELASAGRDKLYCIGVL 191

Query: 273 EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP--SLSAYFDEGENLTPETVDKCP 330
            D    +  +   +     +    +E    L           A   E E       +  P
Sbjct: 192 TDVSEPSRLERVVRAEAALIDRRVRERTARLEREADRQRREIADLAEREARYRGVFEHAP 251

Query: 331 IPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIA--GGLSTLLDAPKLSDNNAIKPVMLY 387
           +   + +  G    ANP+   +  Y S  ++  A       L   P   +    +     
Sbjct: 252 LGVALTTPGGRYIEANPALARMYGYASPRELARAVRDIAGQLYAEPGRREAMEQE----L 307

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
                     A   T++    + LA         +     +       +       +  +
Sbjct: 308 ADSGAVSRFEA---TVRRRDGSLLATRRDVRAIPDAEGNPLYYEHFVQDSSAMDTAEHSL 364

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
                +   I+ A++D +A++  +G  +  N A    FG+  E I+    T FL+ +   
Sbjct: 365 R----RYARIIAASTDMVALVTPDGRYVFVNDAYVAAFGHAREAIVGHHATDFLDPDYFD 420

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP--FSSCYSLTMHDISEWK 565
                     +       E       +  + LS+                 ++ D+++ +
Sbjct: 421 REVAPRLASCAAGEVVHFEYWVELPARGRRYLSIHYSPWVEEGSDERYIVASLRDMTDAR 480

Query: 566 QEKNKLSHAKK 576
              ++L  ++K
Sbjct: 481 LAVDELRESEK 491



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/230 (12%), Positives = 64/230 (27%), Gaps = 2/230 (0%)

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
             GL                 + L  + R  +     L  +         +         
Sbjct: 154 RQGLGVRFFRRDGETRRGSLVLELASAGRDKLYCIGVLTDVSEPSRLERVVRAEAALIDR 213

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
           +  E   +   E +    R     +     +   + E    G+A+    G  +  N A++
Sbjct: 214 RVRERTARLEREADR--QRREIADLAEREARYRGVFEHAPLGVALTTPGGRYIEANPALA 271

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
           +++GY     L +       Q           E    D             ++  LL+ R
Sbjct: 272 RMYGYASPRELARAVRDIAGQLYAEPGRREAMEQELADSGAVSRFEATVRRRDGSLLATR 331

Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
             ++ +P +    L      +     +   H+ +   +  +  +D +A V
Sbjct: 332 RDVRAIPDAEGNPLYYEHFVQDSSAMDTAEHSLRRYARIIAASTDMVALV 381



 Score = 64.3 bits (155), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 51/479 (10%), Positives = 126/479 (26%), Gaps = 44/479 (9%)

Query: 18  CKGNTQDLSK-KKIDNGFETEKSKKENPCHDSFEQ-SNFTDQNQESVSNTNYLDSENTFV 75
           C G   D+S+  +++     E +  +    +   +     D+ +  +++    ++    V
Sbjct: 187 CIGVLTDVSEPSRLERVVRAEAALIDRRVRERTARLEREADRQRREIADLAEREARYRGV 246

Query: 76  FDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG- 134
           F+  P  V         G   E +  L +  G  + + +   + D++  L+ +P      
Sbjct: 247 FEHAPLGVAL---TTPGGRYIEANPALARMYGYASPRELARAVRDIAGQLYAEPGRREAM 303

Query: 135 --DLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192
             +L         + T+   +G+ L    D+ A+P          +  F  V  +   + 
Sbjct: 304 EQELADSGAVSRFEATVRRRDGSLLATRRDVRAIP--DAEGNPLYYEHF--VQDSSAMDT 359

Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK---NKVSSLTEYYAH 249
                +R  +  +   ++    +   +  +   +  +   H R     +  +   +    
Sbjct: 360 AEHSLRRYARIIAASTDMVALVTPDGRYVFVNDAYVAAFGHAREAIVGHHATDFLDPDYF 419

Query: 250 KDDVLKTE-------------KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS 296
             +V                    L       L           +             ++
Sbjct: 420 DREVAPRLASCAAGEVVHFEYWVELPARGRRYLSIHYSPWVEEGSDERYIVASLRDMTDA 479

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-------------FVYSHGNLFY 343
           + + + L      +   Y       + E +D                    +        
Sbjct: 480 RLAVDELRESEKTTSILYRVSSAVASEEHMDSLFRAVRNILAEAVDVDEFLIALVDREAD 539

Query: 344 A-NPSFLLLTKYKSVDDIEIAGGLSTLLDA--PKLSDNNAIKPVMLYRSDRTCIAASARL 400
           A N +  +          E++  L+ L         + + +  VM             RL
Sbjct: 540 ALNHALCIGQDGPPPPIHELSKRLTPLTRENFNDFRETSVLVEVMRTAHPLLVTRRGMRL 599

Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459
             + W          +P     +    M            +     +     QL   +E
Sbjct: 600 TGLTWPGRTPEVWLGVPIRVRQEVLGVMAVMHFADSGRYGKKEADLLLSVAEQLALGVE 658



 Score = 46.2 bits (108), Expect = 0.021,   Method: Composition-based stats.
 Identities = 39/375 (10%), Positives = 87/375 (23%), Gaps = 23/375 (6%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTWYGKTT 148
             G    +++      G+    ++G    D  D  + D      +      +   +    
Sbjct: 383 PDGRYVFVNDAYVAAFGHAREAIVGHHATDFLDPDYFDREVAPRLASCAAGEVVHFEYWV 442

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
             P  G      + +   P +        +     +             +  +K  S L+
Sbjct: 443 ELPARGRRY---LSIHYSP-WVEEGSDERYI-VASLRDMTDARLAVDELRESEKTTSILY 497

Query: 209 EIKKGHSSVEKEKYDIFSQQSP--------PPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
            +    +S E       + ++            + + ++ +    +              
Sbjct: 498 RVSSAVASEEHMDSLFRAVRNILAEAVDVDEFLIALVDREADALNHALCIGQDGPPPPIH 557

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
            L+   + L  +        +   +          ++                 +     
Sbjct: 558 ELSKRLTPLTRENFNDFRETSVLVEVMRTAHPLLVTRRGMRLTGLTWPGRTPEVWLGVPI 617

Query: 321 LTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDI--EIAGGLSTLLDAPKLSDN 378
              + V            G   Y      LL        +  E    L  L  A + +D 
Sbjct: 618 RVRQEVLGVMAVMHFADSGR--YGKKEADLLLSVAEQLALGVERRRNLDALRAAKEEADR 675

Query: 379 NAIKPVMLYRSDRTCI--AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
                     S    I    +A L          L                    GI  +
Sbjct: 676 ANQAKSRFLASMSHEIRTPMNAILGLTDVTLRTELT-PEQRDYLETVQDSARHLLGILND 734

Query: 437 DVD-TRINKRKMEIE 450
            +D ++I  R+ME+E
Sbjct: 735 ILDFSKIEARQMELE 749


>gi|54309013|ref|YP_130033.1| hypothetical protein PBPRA1827 [Photobacterium profundum SS9]
 gi|46913445|emb|CAG20231.1| hypothetical protein PBPRA1827 [Photobacterium profundum SS9]
          Length = 693

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 93/421 (22%), Positives = 171/421 (40%), Gaps = 18/421 (4%)

Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR--KMEIEVM 452
           +  A L  +   +           ++     E    +    E + + +  R  ++     
Sbjct: 144 SGDAVLLFVHSKKGQFTPQCRRVLDRFRPLLERAIIDIDYRERLQSLVTARTQELTHSQQ 203

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
           +     +   D    ++ +      +             I               +    
Sbjct: 204 RFKDFAKTVGDWFWEVDTDYQFTYISSP-----HLANHVIDNANILDIF-GEQSELRVKL 257

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNK 570
           L ++ S    + +E            ++L              Y  T  DI+  KQ   +
Sbjct: 258 LEQLKSKKTFEDIEWKLPEDEG-GLWITLSGTPYFNKQGKLLGYRGTAKDITNRKQRLVE 316

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           L  A+K AE  ++ KS+FLA +SHEIRTPL A++G  + + +       + + +E+ + +
Sbjct: 317 LQLARKQAETANNAKSEFLAMMSHEIRTPLNAVLGLMDTLVDSGL----DKKQMEWVSQM 372

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
           ++S  L+L I+ND+LD+S+IESGK  L    + + ++VS  ++ +   A  K I + T  
Sbjct: 373 EQSAQLLLTIINDILDLSRIESGKFELFNTDICIADSVSLVVNQLNEQAKRKNITLTTQI 432

Query: 691 ANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749
             ++P  +L D   + Q+  N++ NAI FT  G  + +S     N  + + V DTG+G+ 
Sbjct: 433 DESVPGSMLGDKNRITQVMFNLIGNAIKFTNVGS-VRVSVKAV-NNHIEIAVTDTGIGIA 490

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            Y       PF Q   S   R  GTGLGL ++  ++    G   + S    G+   +  P
Sbjct: 491 PYAQNTLFNPFIQADGSITRRYGGTGLGLAISMHLIKKMDGNISLDSMLNVGSCFTVSIP 550

Query: 810 L 810
           +
Sbjct: 551 I 551



 Score = 46.6 bits (109), Expect = 0.016,   Method: Composition-based stats.
 Identities = 20/141 (14%), Positives = 42/141 (29%), Gaps = 14/141 (9%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG--DLLKRQNTWY 144
           W +D       IS          A  +I     ++ DI        +   + LK + T+ 
Sbjct: 217 WEVDTDYQFTYISSPHL------ANHVIDN--ANILDIFGEQSELRVKLLEQLKSKKTFE 268

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
                 P +     + I L+  P +++  +  G+RG                 +   K+ 
Sbjct: 269 DIEWKLPEDEGG--LWITLSGTPYFNKQGKLLGYRG--TAKDITNRKQRLVELQLARKQA 324

Query: 205 SHLHEIKKGHSSVEKEKYDIF 225
              +  K    ++   +    
Sbjct: 325 ETANNAKSEFLAMMSHEIRTP 345


>gi|328553750|gb|AEB24242.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens
           TA208]
          Length = 739

 Score =  311 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 94/737 (12%), Positives = 238/737 (32%), Gaps = 67/737 (9%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLW 150
              + + +E   + +   A  +I   + D    +  +  N  +   LK+ + W       
Sbjct: 51  EMKIVQANEAAARMMQIEAESLINRSVLDFLYSVPQEELNKAVKKFLKKGHLWKEVPIKL 110

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
               T     +        +++     +  F ++                ++ F  L + 
Sbjct: 111 DSGATKYIEFL--------AKDGIGEDYF-FVVMRDISSKKILEREFSMNEQLFKDLFDR 161

Query: 211 KKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
                 +  +                +           ++   ++    ++      ++ 
Sbjct: 162 AVDGIVLFDKDGGFIDANLSFCKSFEIGQNELSHLSLRHFTEGENNKHLKEIWDTLGKKG 221

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
               +      +  +   +    +   +              S+     + E    E  +
Sbjct: 222 KAKGELPVKLRSGEEKLFEFTITSNLISGFYMSIMRDITEKRSMELKLFKSEERFREIFE 281

Query: 328 KCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEI--------AGGLSTLLDAPKLSDN 378
                  ++   G +  AN S   + +      +E                +        
Sbjct: 282 NAMDAIVIWSDDGRIAKANESACRIFELPMDKLVERNLCSFIVDPQKKYKQIKKKYEKYG 341

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
              + ++   ++                 ++   +                         
Sbjct: 342 EIREEMLFQMANGQYKELEFTSKRTILEGQHLTIL---------------------RNVS 380

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
           D +  ++++    ++   +   + DG  + + +  I+  N   S++ G P E++      
Sbjct: 381 DRKRMEKELRESELKFRKVFNGSMDGKVLFDNQFRIIDANPLASRILGMPDEELRAYTVP 440

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM 558
             L             +I        ++              L    K+    +      
Sbjct: 441 DILSLFDIENAGVPARKIDLEG----MDNEIPFLLSSSDSRKLEFSFKRNIIQNMNLAIF 496

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            D++E K+ + +L  +  +         +  A ++HEIR P+TA+ GF ++++    G  
Sbjct: 497 KDVTEAKELEERLRKSDTLHVV-----GELAAGIAHEIRNPMTALKGFIQLLQGSIEG-- 549

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
               +  Y N I      +  I+ + L ++K ++    + +E   + + + +   L+   
Sbjct: 550 ---EHSLYFNVITSELKRIESIITEFLILAKPQA----ILYEEKDVTQIMKDTADLLNAQ 602

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738
           AN   + I  +   NIP I  +   +KQ+ +NIL NAI   P GG I ++   +  + ++
Sbjct: 603 ANLVNVQIHLNLTGNIPPIYCEPNQLKQVFINILKNAIEVMPGGGNIYVTIQPSDKDHIL 662

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           + ++D G GM+  +L++  +PF    +       GTGLGL ++  +++ + G+ ++ S  
Sbjct: 663 ISLQDEGTGMSEDKLKRLGEPFYTTKD------RGTGLGLMVSYKIIEEHQGRIHVESEE 716

Query: 799 AKGTLIEIIFPLYDTSH 815
            KGT+  +  P+   + 
Sbjct: 717 GKGTVFHLTLPIRQNTE 733



 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 52/137 (37%), Gaps = 3/137 (2%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +    +++ ++ +   I+  T D I I ++E  I+  N A +++     E ++ +    F
Sbjct: 21  KEENDRLKSDLHRYHVIMNNTLDAIFICHKEMKIVQANEAAARMMQIEAESLINRSVLDF 80

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
           L       +N  + + L       L K             +  + K       + + M D
Sbjct: 81  LYSVPQEELNKAVKKFLKKGH---LWKEVPIKLDSGATKYIEFLAKDGIGEDYFFVVMRD 137

Query: 561 ISEWKQEKNKLSHAKKI 577
           IS  K  + + S  +++
Sbjct: 138 ISSKKILEREFSMNEQL 154


>gi|116873389|ref|YP_850170.1| sensor histidine kinase ResE [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116742267|emb|CAK21391.1| sensor histidine kinase ResE [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 594

 Score =  311 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 77/377 (20%), Positives = 154/377 (40%), Gaps = 42/377 (11%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
             +  E  QL +IL   +DG+   + +  I+ +N    +                F    
Sbjct: 249 SALRQEKEQLSNILVGMADGVIKFSVDKTIILSNPPAEEFLH-----------NWFFSPE 297

Query: 505 TPS------VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM 558
                     ++  L E L     Q  E        +   +++  ++            +
Sbjct: 298 NSEKVLIPVALDDLLNETLDKKESQVGEITF----ADRTYVAILTLLYTGEHVRSVVAVI 353

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            D++E KQ +                KSDF+  VSHE+RTP++ + G+SE I +      
Sbjct: 354 RDMTEEKQLE--------------KMKSDFVNNVSHELRTPISMLQGYSEAIIDGV--AQ 397

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
            +    E+A  I      +  +VND+LD++++E+G  ++  + + +   + + I+   + 
Sbjct: 398 SDEEVREFAQIIYDESLRIGRLVNDMLDLARMEAGFNHMDNQKMPIAPLLEKVIANFDVL 457

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS----GGQIIISTTHTSN 734
           A E  + +             D   ++Q+ +N++ NAI  T      G  I+  T   + 
Sbjct: 458 AKENFVELGLELETPNLEYSYDQDRMEQVLINLIMNAIRHTGKEGYAGKVILKQTIDKTR 517

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGEGTGLGLPLAKAMVDANMGKFY 793
             +++ V D G G+   ++    + F +   +++  +  GTG+GL + K +V+A+ GK  
Sbjct: 518 NNLVITVSDNGSGIAEEDIPYLFERFYKADKARKRGKAVGTGIGLAIVKNIVEAHNGKIS 577

Query: 794 IFSTPAKGTLIEIIFPL 810
           + S   +G+   I  PL
Sbjct: 578 VESVLGEGSDFIITLPL 594


>gi|219850592|ref|YP_002465025.1| multi-sensor hybrid histidine kinase [Chloroflexus aggregans DSM
           9485]
 gi|219544851|gb|ACL26589.1| multi-sensor hybrid histidine kinase [Chloroflexus aggregans DSM
           9485]
          Length = 913

 Score =  311 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 101/643 (15%), Positives = 215/643 (33%), Gaps = 34/643 (5%)

Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYD----IFSQQSPPPHLRMKN 238
           +              +  ++              V     D      ++          N
Sbjct: 19  LAQQIADLQAEITRLRTQNRFLLAAVNEMASGMIVTDAGADQPIVFVNRAFSTITGYAPN 78

Query: 239 KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDF--HTINLNQYTKKQYFGTLQNNS 296
           +V      +             L  +  ++ P QE    +  +   +  +     +++ +
Sbjct: 79  EVLGRNCRFLQGPQTDAATVARLREAIAAARPIQERILNYRKDGQPFWNQLSISPVRDET 138

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVDK----CPIPFFVYSHGNLFYANPSFLLLT 352
                ++  +   +     ++      + +        +  +              +   
Sbjct: 139 GNVVAFVGVQTDVTAQVAVEQALAEREQLLRAVEKMASVGGWELDLATGTMVWSEEMFAI 198

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR--TCIAASARLHTIQWNRENS 410
               V DI  +  L     A      N +    L         +        ++W R   
Sbjct: 199 HELPVGDIPPSPELIDFYPAEVHHLINEVYERCLATGAEWDLALPFRTAKGNLRWVRSIG 258

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS-DGIAIIN 469
             +         +    +   G   +   T+ N+  +     +   + +      + + N
Sbjct: 259 QPVW--------ENGRIVKLRGTFQDITRTKENELALRASEQRYRMLADMLPGTIVLMFN 310

Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
            +  +          FG     +  +     L +   S +     E+L       ++ + 
Sbjct: 311 TDFRLTLAAGPELARFGVTSAQLEGRLLPELLPEPHYSKLLPLCYEVL-NGATHRIDYVV 369

Query: 530 LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
                +  LL + I    +       +   +I+  +Q    L  AK+ AE+    ++ FL
Sbjct: 370 DHQVFDTTLLPIEITPGHVSGG---LIVGRNITVERQIATDLLRAKEAAEQAERARTSFL 426

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
           A +SHE+RTPL A+I  +EV+              ++   I      +L ++N++LD+SK
Sbjct: 427 AAISHEMRTPLNAVIASTEVLLRGGL----TDEQRDFVETIRIGSESLLTLINNVLDLSK 482

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIA 708
           +E+G++ L  +P  L   ++    L +  A  K + +       +P  ++ D   V+QI 
Sbjct: 483 LEAGQVELEPKPTDLRAIITTVCELFRREAVRKGLHMGVRIDPALPPLVIVDGVRVRQIV 542

Query: 709 LNILSNAIHFTPSGGQ-IIIST--THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
            N++SNAI FT  G   I +          +V +RV DTG+G+T+  L K  +PF +  +
Sbjct: 543 TNLVSNAIKFTDHGSVSITVELLDVADDRCQVAIRVSDTGIGITSEHLPKLFQPFIRYRS 602

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            Q  R +G  LGL ++  +     G+    S   +G+   +  
Sbjct: 603 EQVRR-DGARLGLAISAQLASLMGGELRADSRLGEGSTFTLSL 644



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/387 (10%), Positives = 77/387 (19%), Gaps = 27/387 (6%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKRQNTWYGKTT 148
            A   +  ++       G    +++G     +            + + +        +  
Sbjct: 57  GADQPIVFVNRAFSTITGYAPNEVLGRNCRFLQGPQTDAATVARLREAIAAARPIQERIL 116

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
            +  +G        L+  P+         F   G+                 ++    + 
Sbjct: 117 NYRKDG--QPFWNQLSISPVRDETGNVVAF--VGVQTDVTAQVAVEQALAEREQLLRAVE 172

Query: 209 EIKKGHSSVEKEKYDIFSQQS--------PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
           ++                           P   +    ++        H    L  E Y 
Sbjct: 173 KMASVGGWELDLATGTMVWSEEMFAIHELPVGDIPPSPELIDFYPAEVHH---LINEVYE 229

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE---SFEYLSHRNHPSLSAYFDE 317
              +  +       F T   N    +     +  N +       +               
Sbjct: 230 RCLATGAEWDLALPFRTAKGNLRWVRSIGQPVWENGRIVKLRGTFQDITRTKENELALRA 289

Query: 318 GENLTPETVDKCPIPFFV--YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
            E       D  P    +   +   L  A    L      S         L  LL  P  
Sbjct: 290 SEQRYRMLADMLPGTIVLMFNTDFRLTLAAGPELARFGVTSAQLEGRL--LPELLPEPHY 347

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
           S    +   +L  +              Q      L +   P   +              
Sbjct: 348 SKLLPLCYEVLNGATHRIDYVVDH----QVFDTTLLPIEITPGHVSGGLIVGRNITVERQ 403

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATS 462
              D    K   E       S L A S
Sbjct: 404 IATDLLRAKEAAEQAERARTSFLAAIS 430



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 21/177 (11%), Positives = 64/177 (36%), Gaps = 15/177 (8%)

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC-------SILEATSDGIAIIN--REGI 473
           +  E +  +    ++ +       ++ E+ +L        + +   + G+ + +   +  
Sbjct: 2   ERSEPLSASEHSTQETELAQQIADLQAEITRLRTQNRFLLAAVNEMASGMIVTDAGADQP 61

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
           I+  NRA S + GY   ++L +         T +     L E ++    + +++  L   
Sbjct: 62  IVFVNRAFSTITGYAPNEVLGRNCRFLQGPQTDAATVARLREAIA--AARPIQERILNYR 119

Query: 534 KEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
           K+ +    ++ I  +   +     +     D++     +  L+  +++        S
Sbjct: 120 KDGQPFWNQLSISPVRDETGNVVAFVGVQTDVTAQVAVEQALAEREQLLRAVEKMAS 176


>gi|21231592|ref|NP_637509.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66768286|ref|YP_243048.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|21113281|gb|AAM41433.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66573618|gb|AAY49028.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 1146

 Score =  311 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 112/691 (16%), Positives = 211/691 (30%), Gaps = 74/691 (10%)

Query: 181 FGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKY--DIFSQQSPPPHLRMKN 238
                 +      +      + +   L +       +       D F+Q+         +
Sbjct: 306 VARCWESMQRAKAQRQLAASEGRLRRLADTVPQIIFIADPAGQPDYFNQRWYEYTGLNPD 365

Query: 239 KVSSLTEYYAHKDDVLKTEKYPLLTS--EESSLPEQEDFHTINLNQYTKKQYFGTLQNNS 296
             +S     AH    L+        +   E +   + +    +            +++  
Sbjct: 366 TEASAAWQQAHSAAGLRMSGQAWALALNGERAYEIECELRRHDGQTRWHLARALPVRDEH 425

Query: 297 KESFEYLS----HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLL 351
               E++       +         E E       +  P   ++    GN  Y NP +   
Sbjct: 426 GRISEWIGTYTDIHDRRGFEHKLRESEARFRALCETVPAMIWMADVDGNCVYWNPQWYEF 485

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411
           T       ++  G  + +         +A +  +  R       A    + I+ +     
Sbjct: 486 TGQGEEQALDQ-GWWNAMHPDDAARVRHAFEQALDARG------AFIAEYRIRRHDGQYR 538

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI---------LEATS 462
                           +   G   +  D +  +     +   L  I         L+A +
Sbjct: 539 WCIDTASPHFGSDGRFLGHIGSLTDISDRKRIEDATASDRAILSLITTGAPLTVVLDAIA 598

Query: 463 D------------GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
                         + +++ E   L    A   L      D    P          S  +
Sbjct: 599 LSVEARGETPLYCAVMVLDEEHQTLQF-AAAPHLPRDYSGDFENAPIGPSGPPCARSAHS 657

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEK----LLSLRIIIKKL------------------ 548
                   +      E     S         +  +      +                  
Sbjct: 658 GLQVICEDIANDPRFEDHRALSAAMGIAACCVTPILGSNGAVLGTLNIYYAQPHLASLRE 717

Query: 549 ----PFSSCYSLTMHDISE----WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
                 +S  +  + + +      K      + A+  AE  S  K +FLA +SHE+RTPL
Sbjct: 718 QAMARSASHLAGIVIERTRVDAKLKASLQAETAARNQAEHASRVKDEFLATLSHELRTPL 777

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
            AI+G+S +++   F P    +  +    I+RS      I++DLLD+S I SGK+ L  E
Sbjct: 778 NAILGWSRLMQADAFEP---AKLGKGLVVIERSARAQTQIIDDLLDMSAILSGKIRLQPE 834

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFT 719
              +       + L+Q  A  ++I +              D   ++Q+  N++SNA+ FT
Sbjct: 835 HFDIAGLARSTVELMQPTAQARQIRLELDAPLQGSLWFFGDAGRLQQVLTNLISNALKFT 894

Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
              G + +S        + L VRDTG+G+    L      F Q       R  G GLGL 
Sbjct: 895 APEGDVRVSLEVEEQ-RLRLCVRDTGIGIAADFLPHVFDRFRQADAGTTRRVGGLGLGLS 953

Query: 780 LAKAMVDANMGKFYIFS-TPAKGTLIEIIFP 809
           +++ ++D + G     S     G    ++ P
Sbjct: 954 ISRQLIDLHGGSLGASSDGEGHGATFTVVLP 984



 Score =  119 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 37/388 (9%), Positives = 89/388 (22%), Gaps = 21/388 (5%)

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK-NKVSSLTEYYAHKDDVLKTEK 258
           L  +   +  +   +          F  ++            +  T             +
Sbjct: 200 LAAEDHSVMHVISDYVQDMPSLKGDFPLEAAQGLRDALLENRTWFTTDAMAPGAPDYVVE 259

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN------HPSLS 312
               +   +SL      H   +      Q       ++      L               
Sbjct: 260 QYRHSGLRASLAIPLHKHGQLVAAIGVHQRAPRQWASTDIELVRLVVARCWESMQRAKAQ 319

Query: 313 AYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
                 E       D  P   F+    G   Y N  +   T      +   A        
Sbjct: 320 RQLAASEGRLRRLADTVPQIIFIADPAGQPDYFNQRWYEYTGLNPDTEASAAWQ-----Q 374

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
           A   +             +    A        + + +    +        ++        
Sbjct: 375 AHSAAGLRMSGQAWALALNGE-RAYEIECELRRHDGQTRWHLA-RALPVRDEHGRISEWI 432

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
           G   +  D R  + K+     +  ++ E     I + + +G  +  N    +  G   E 
Sbjct: 433 GTYTDIHDRRGFEHKLRESEARFRALCETVPAMIWMADVDGNCVYWNPQWYEFTGQGEEQ 492

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
            L + +   +  +  + + H   + L                 + +             S
Sbjct: 493 ALDQGWWNAMHPDDAARVRHAFEQALDARGAFI--AEYRIRRHDGQYRWCIDTASPHFGS 550

Query: 552 SCY----SLTMHDISEWKQEKNKLSHAK 575
                    ++ DIS+ K+ ++  +  +
Sbjct: 551 DGRFLGHIGSLTDISDRKRIEDATASDR 578



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 16/252 (6%), Positives = 44/252 (17%), Gaps = 9/252 (3%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD-LLKRQNTWY 144
            +  D  G     ++   +  G                   +  +       L  +  + 
Sbjct: 340 IFIADPAGQPDYFNQRWYEYTGLNPDTEASAAWQQAHSAAGLRMSGQAWALALNGERAYE 399

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            +  L   +G          ALP+   +   S     G               +  + +F
Sbjct: 400 IECELRRHDG--QTRWHLARALPVRDEHGRIS--EWIGTYTDIHDRRGFEHKLRESEARF 455

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQ----SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
             L E       +     +                 +             D       + 
Sbjct: 456 RALCETVPAMIWMADVDGNCVYWNPQWYEFTGQGEEQALDQGWWNAMHPDDAARVRHAFE 515

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
                  +   +      +               +      ++      S     ++   
Sbjct: 516 QALDARGAFIAEYRIRRHDGQYRWCIDTASPHFGSDGRFLGHIGSLTDISDRKRIEDATA 575

Query: 321 LTPETVDKCPIP 332
                +      
Sbjct: 576 SDRAILSLITTG 587



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/166 (11%), Positives = 37/166 (22%), Gaps = 7/166 (4%)

Query: 69  DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID 128
           +SE  F            W  D  G     + +  +  G    + +     +        
Sbjct: 450 ESEARFRALCETVPA-MIWMADVDGNCVYWNPQWYEFTGQGEEQALDQGWWNAMHPDDAA 508

Query: 129 PNN-HIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187
                    L  +  +  +  +   +G   Y      A P +  +  F G    G +   
Sbjct: 509 RVRHAFEQALDARGAFIAEYRIRRHDG--QYRWCIDTASPHFGSDGRFLGH--IGSLTDI 564

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH 233
                        D+    L       + V          +   P 
Sbjct: 565 SDRKRIEDAT-ASDRAILSLITTGAPLTVVLDAIALSVEARGETPL 609


>gi|291483934|dbj|BAI85009.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           natto BEST195]
          Length = 609

 Score =  311 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 105/509 (20%), Positives = 203/509 (39%), Gaps = 37/509 (7%)

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364
           H   P+         +     V+  P P  +   G + Y N + L +   KS D I    
Sbjct: 128 HEIEPASPESTTYITDDYERLVENLPSPLCISVKGKIVYVNSAMLSMLGAKSKDAIIGKW 187

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA-MTFIPFEKANQ 423
                    +  D    + + + +     +         + +       +   P    NQ
Sbjct: 188 SYE--FIEEEYHDIVKNRIIRMQKGMEVGM---IEQTWKRLDGTPVHLEVKASPTVYKNQ 242

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
             E +       +    +  +  ++    +   +++ + D IA+I   G  +  N +   
Sbjct: 243 QAELLLI-----DISSRKKFQTILQKSRERYQLLIQNSIDTIAVI-HNGKWVFMNESGIS 296

Query: 484 LFGY-PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
           LF     ED++ K     L       +   +  I        + K +   T + +++   
Sbjct: 297 LFEAATYEDLIGKNIYDQLHPCDHEDVKERIQNIAEQKTESEIVKQSWF-TFQNRVIYTE 355

Query: 543 IIIKKLP--FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
           ++         +   + + DISE KQ +  +  ++K++           A ++HEIR PL
Sbjct: 356 MVCIPTTFFGEAAVQVILRDISERKQTEELMLKSEKLSIA-----GQLAAGIAHEIRNPL 410

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
           TAI GF +++K    G         Y + +    + +  I+++LL ++K +   +    E
Sbjct: 411 TAIKGFLQLMKPTMEGNE------HYFDIVFSELSRIELILSELLMLAKPQQNAVK---E 461

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720
            ++L + + E  +L++  AN   I IRTS+  +   I  D   +KQ+ +N++ NA+   P
Sbjct: 462 YLNLKKLIGEVSALLETQANLNGIFIRTSYEKDSIYINGDQNQLKQVFINLIKNAVESMP 521

Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
            GG + I  T      V + V+D G G+    L +  +PF         + +GTGLGL +
Sbjct: 522 DGGTVDIIIT-EDEHSVHVTVKDEGEGIPEKVLNRIGEPFLTT------KEKGTGLGLMV 574

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
              +++ + G  ++ S P KGT  +I FP
Sbjct: 575 TFNIIENHQGVIHVDSHPEKGTAFKISFP 603


>gi|268590725|ref|ZP_06124946.1| sensor histidine kinase/response regulator [Providencia rettgeri
           DSM 1131]
 gi|291313496|gb|EFE53949.1| sensor histidine kinase/response regulator [Providencia rettgeri
           DSM 1131]
          Length = 781

 Score =  311 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 94/492 (19%), Positives = 194/492 (39%), Gaps = 24/492 (4%)

Query: 329 CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388
             +   +   G++       L +        I     +  L    +  + +  +   +  
Sbjct: 38  MQMAVTIVLRGHVDS-----LDMVGSIFFGLIITPLAVYFLSVVVEQLEESRQRLSRMVD 92

Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
                    A L+T Q           I   +  +         ++ E       + ++E
Sbjct: 93  KLEVMRKRDADLNT-QLQGNIEQLNLEILEREKAERAHLELLEQLKQEMKYREQTQIELE 151

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
            + + L S L+A+ D +   N        NRA+  L G   + ++        +    S 
Sbjct: 152 QQSVLLRSFLDASPDLVYYRNENNEFSGCNRAMELLTGKSEKHLVGLTPLDIYDVEIASK 211

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII--KKLPFSSCYSLTMHDISEWKQ 566
           +     ++   ++  T E+  +     +    LR +    ++           DI+E K+
Sbjct: 212 VMETDEKVFRHNVSLTYEQWLVYPDGRKACFELRKVPFYDRVGKRHGLMGFGRDITERKR 271

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
                   ++  E  S  K+ F++ +SHE+RTPL  I+G S ++ +             Y
Sbjct: 272 -------YQEALESASREKTTFISTISHELRTPLNGIVGLSRILLDTDLTS----EQSSY 320

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
              I  S   + +I ND++++ KIE  K+ L  +P++L E V++  +L  L    K +  
Sbjct: 321 LKTIHVSAVTLGNIFNDIIEMDKIERRKVQLDNQPITLSEFVNDLENLSGLLVQPKGLKF 380

Query: 687 RTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
               A  +P  +L D   ++QI  N++ NA+ FT  G ++ +S    +  ++  RV+D+G
Sbjct: 381 VMDVAPALPKTVLTDGTRLRQILWNLIGNAVKFTQKG-EVKLSIWQEAENKLFFRVQDSG 439

Query: 746 VGMTNYELEKAMKPFGQ-IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           +G+   EL+K    + Q   ++      GTG+GL +++ +     G   + S   +G+  
Sbjct: 440 IGIPKGELDKIFAMYYQVTDSAGGKPATGTGIGLSVSRRLAQNMGGDIQVESEIGQGSTF 499

Query: 805 EIIF--PLYDTS 814
            +    P+ ++ 
Sbjct: 500 TLSITAPVVESH 511



 Score = 42.3 bits (98), Expect = 0.36,   Method: Composition-based stats.
 Identities = 16/124 (12%), Positives = 36/124 (29%), Gaps = 5/124 (4%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN-TWYGKTTLWPIE 153
               +  +    G     ++G+   D+ D+          + + R N +   +  L   +
Sbjct: 177 FSGCNRAMELLTGKSEKHLVGLTPLDIYDVEIASKVMETDEKVFRHNVSLTYEQWLVYPD 236

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
           G       +L  +P Y R  +  G  GFG           +   +   ++ +        
Sbjct: 237 GRKACF--ELRKVPFYDRVGKRHGLMGFG--RDITERKRYQEALESASREKTTFISTISH 292

Query: 214 HSSV 217
               
Sbjct: 293 ELRT 296


>gi|294506015|ref|YP_003570073.1| sensor histidine kinase [Salinibacter ruber M8]
 gi|294342343|emb|CBH23121.1| sensor histidine kinase [Salinibacter ruber M8]
          Length = 593

 Score =  311 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 102/522 (19%), Positives = 191/522 (36%), Gaps = 28/522 (5%)

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS----HGNLFYANPSFLLLTKYKSVDD 359
           S       +    +  N     +D  P+P           N+  AN +F     +   + 
Sbjct: 81  STAQLKEATRDAHDDRNRLENLLDGLPVPVVHGRVEGETLNILAANAAFERAFGHDPEES 140

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
           I         L       +       +         A A +     + +    +      
Sbjct: 141 IGEN------LYDLIRPGDTQRGTGRINHQALDEGVAEAEVQYETPDGQRKFQLRVAQAL 194

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
            +              +    +  + +++    +L   L+ +  G      +   +  + 
Sbjct: 195 DSGASETYSVY----TDITKRKRREERLQTLYARLQLALDVSDTGTFDWEIQADEVIWDE 250

Query: 480 AVSKLFGYPVEDILRKP--FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
              +LFGY           +   +  +    +   + + +  D ++             +
Sbjct: 251 TSERLFGYEPGGFPGTFAAWAQRVHPDDLPGVREDIEQAI--DAQEEFRTEFRAQIPGGQ 308

Query: 538 LLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
              +                      DI+E K+ +  L  AK+ AE+ +  KS  LA +S
Sbjct: 309 QRWIEGRGIVEYDDRGEPIRMLGIHTDITERKKREQTLREAKERAEEAARLKSAMLANMS 368

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HEIRTPLT+I GFSEV++    G  G+     +A  I +S   +   +  +L +SK+ES 
Sbjct: 369 HEIRTPLTSITGFSEVLEQNLSGQHGD-----FATKIRKSSERLQRTLESVLHLSKLESS 423

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713
              L  E VSL   V +  + ++    EK + ++T   ++    +++  ++ +I  N+L 
Sbjct: 424 VHKLEREEVSLRAVVEDVTAALRDDLTEKSLALQTEIPDSPVSGISNEDALHRICRNLLE 483

Query: 714 NAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
           NAI FTP+GG + I           L + D+G+GM    +    + F Q         EG
Sbjct: 484 NAIKFTPAGGCVGIRL-LDEGRSATLEIEDSGIGMDPENVPGLFQAFRQESEGMAREYEG 542

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
           +GLGL + K + D   G+  + +   +GT   +  PL D +H
Sbjct: 543 SGLGLSIVKRLTDELGGEVDVETEKGEGTCFAVTLPLTDDAH 584


>gi|148264071|ref|YP_001230777.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter
           uraniireducens Rf4]
 gi|146397571|gb|ABQ26204.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter
           uraniireducens Rf4]
          Length = 904

 Score =  311 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 101/745 (13%), Positives = 218/745 (29%), Gaps = 44/745 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + +DA G +   +    +  G    ++IG                    L + Q     
Sbjct: 176 IFMLDADGNVLNWNAGAERLKGYQGEEIIGKPFSCFYPEEERSAGKPEEQLERAQREGRV 235

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
               W +         D+    +   +    GF    + H            +  +++F 
Sbjct: 236 AADGWRVRKDGSRFWADIIITALRLDDGNLRGFST--VTHDITERKRAEDALRFSEERFR 293

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQS---PPPHLRMKNKVSSLTEYYAHKDDV--LKTEKYP 260
            L+       +    +  + S            +            H+DD   L  +   
Sbjct: 294 ALYRDNPTMIATIDAELTMLSVNPFCASQLGYTIDELEGQPVLKIFHEDDRPALAEQLRR 353

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL---SHRNHPSLSAYFDE 317
            L +       Q      +      ++    + + +      +      +         E
Sbjct: 354 CLQNPARVYQWQFRKVRKDGGLLWVEEIAQAVYDLNGALNILVVCQDITDRKRTEDALRE 413

Query: 318 GENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
            E     T ++  +   + +        N  +  +  Y   +       L  L       
Sbjct: 414 SEERFRATFNQAAVGMGLMTPDSRWMRINQRYCDIVGYTEEE-------LKALTIKDITH 466

Query: 377 DNNAIKPV--MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
            ++  + +       +      S     I+ +  + + +       A+   +     G+ 
Sbjct: 467 PDDREESLKQFHLLLEGRIGNYSLEKRYIRKDG-SIVWVNITASMVADADGKPRFAVGVV 525

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
            +    +  +  +     +     ++  D IAI++ +  I   NRA++K  G   E+ + 
Sbjct: 526 EDITSRKQAEEALVRAKNEWELTFDSVQDLIAILDDQYRITRLNRAMAKRLGRKPEECIG 585

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-- 552
                 +          +   I +LD  +  +            L +       P     
Sbjct: 586 LVCYNVIHGTESPP--EFCPHIKTLDDGRVHDAEVHDGHLAGDFL-VSTTPLLDPDGKMI 642

Query: 553 CYSLTMHDISEWKQEKNK-------LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
                  DI+E K+   +       L+      E  +     F   V+H++R PLT + G
Sbjct: 643 GVVHMARDITERKRADEEIERLNTDLAARADELEAANRELEAFNYTVAHDLRKPLTVVNG 702

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
           + + I       L   +   Y          +  ++  LL+ S++    +    E V L 
Sbjct: 703 YCQAIHEMCGDKLC-EQCTGYLREAYDGTLRMNGLIEALLNFSRLV--HLEPRREMVDLS 759

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP--SGG 723
               E  + ++L   E+R+  R +   +      D   ++ +  N+L NA  +T     G
Sbjct: 760 HMAHEVETELKLAEPERRVKFRIT---DGVSADGDAGLLRVVLDNLLGNAWKYTDKREEG 816

Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
            I    T    +     VRD G G    + +K   PF ++P        G G+GL   + 
Sbjct: 817 VIEFGVTEIEGKPAWF-VRDNGTGFDMADADKLFAPFQRLPG--VEECRGFGIGLATVER 873

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIF 808
           ++  + G+ +      K        
Sbjct: 874 IIRRHGGRVWAEGEAGKRATFYFTL 898



 Score =  148 bits (373), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 49/525 (9%), Positives = 133/525 (25%), Gaps = 36/525 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP--NNHIGDLLKRQNTWYGK 146
           +D  G +  ++       G    +++G     +     +      H              
Sbjct: 50  VDTSGTILLVNTTAEHMFGYSREELVGKPHA-ILIPERLRGVHEEHQAHYFAEPRLRSMG 108

Query: 147 TTL----WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
                     +G+   V I L+ +         +G      V    +     +  +  ++
Sbjct: 109 ELHDLAGRRRDGSEFPVEISLSFI------ETINGVLVMAFVSDITLRKQYESRLRESEE 162

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR---MKNKVSSLTEYYAHKDDVLKTEKY 259
            F    E  K ++    +        +            ++        + ++     K 
Sbjct: 163 LFHTQVECVKDYAIFMLDADGNVLNWNAGAERLKGYQGEEIIGKPFSCFYPEEERSAGKP 222

Query: 260 P---LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
                    E  +         + +++        L+ +      + +  +  +     +
Sbjct: 223 EEQLERAQREGRVAADGWRVRKDGSRFWADIIITALRLDDGNLRGFSTVTHDITERKRAE 282

Query: 317 EGENLTPETVDKC----PIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
           +    + E         P     + +   +   NP       Y  +D++E    L     
Sbjct: 283 DALRFSEERFRALYRDNPTMIATIDAELTMLSVNPFCASQLGYT-IDELEGQPVL----- 336

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
                D+       L R  +                   L +  I     +     +   
Sbjct: 337 KIFHEDDRPALAEQLRRCLQNPARVYQWQFRKVRKDGGLLWVEEIAQAVYDLNG-ALNIL 395

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
            +  +  D +  +  +     +  +     + G+ ++  +   +  N+    + GY  E+
Sbjct: 396 VVCQDITDRKRTEDALRESEERFRATFNQAAVGMGLMTPDSRWMRINQRYCDIVGYTEEE 455

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
           +           +           +L   +            K+  ++ + I    +  +
Sbjct: 456 LKALTIKDITHPDDREESLKQFHLLLEGRI-GNYSLEKRYIRKDGSIVWVNITASMVADA 514

Query: 552 SC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
                     + DI+  KQ +  L  AK   E       D +A +
Sbjct: 515 DGKPRFAVGVVEDITSRKQAEEALVRAKNEWELTFDSVQDLIAIL 559



 Score = 88.5 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 57/129 (44%), Gaps = 4/129 (3%)

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
            ++LE+ ++G+ I++  G IL  N     +FGY  E+++ KP  + + +    V   +  
Sbjct: 37  RTLLESLAEGVVIVDTSGTILLVNTTAEHMFGYSREELVGKPHAILIPERLRGVHEEHQA 96

Query: 515 EILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSCYS--LTMHDISEWKQEKNK 570
              +    +++       G  ++     + I +  +   +       + DI+  KQ +++
Sbjct: 97  HYFAEPRLRSMGELHDLAGRRRDGSEFPVEISLSFIETINGVLVMAFVSDITLRKQYESR 156

Query: 571 LSHAKKIAE 579
           L  ++++  
Sbjct: 157 LRESEELFH 165


>gi|326317128|ref|YP_004234800.1| multi-sensor hybrid histidine kinase [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323373964|gb|ADX46233.1| multi-sensor hybrid histidine kinase [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 663

 Score =  311 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 103/487 (21%), Positives = 184/487 (37%), Gaps = 18/487 (3%)

Query: 332 PFFVYSHGNLFYA--NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389
           P   YS   +  A    +    +  +++           L       D  A+   +  R 
Sbjct: 25  PVTRYSTARIVRAAGFQTEEAESGAQALQMAGQGISAVVLDVHLPDIDGFAVCRALRARE 84

Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449
           D   +             +    +            E     G     +  R  +  +  
Sbjct: 85  DTAQLPVMHLSAAHVHAEDRVTGLNAGADAYLTHPVEPAVLVGTLQALIRARTAEDSLRR 144

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
              +  +I      GI ++ R+G     N A+++L G   +++L +  + F        +
Sbjct: 145 SDRRFRAIYSQALSGIGLLERDGCFTDVNPAMARLLGRTRQEVLGRSISEFAPPGWVDFV 204

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN 569
                + +      T +          + + L   I              DISE  +  +
Sbjct: 205 RD---KTVDSGQSATWQGEFPLMRPSGQWVYLEWSISAHVEPGLRMALAADISERVELDS 261

Query: 570 KLSHAKKIAEKE-------SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +     +  +         S  K DF+A +SHE+RTPL AI G+  ++K +     G P 
Sbjct: 262 RRQEVLEREQAARATAERLSRTKDDFIAVLSHELRTPLNAIAGWVHILKRRG----GTPE 317

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
            I+  + I R+      I++D+LD+S+I SGK++L  E     E V  AI  +Q    EK
Sbjct: 318 LIKGLDSIHRNVKAQARIISDILDVSRINSGKLHLEREWTQPAEVVRSAIDALQASIAEK 377

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
            + I  +   +I     D    +QI  N+L+NAI F+   G+I +S +  + + + L V+
Sbjct: 378 HLEIVLTAGEDIGPAWLDPTRFQQIFWNLLTNAIKFSNDSGRIDVSMS-RAGDALTLTVQ 436

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKG 801
           D G G++   +E     F Q  +    R  G GLGL + K + + + G    +S    +G
Sbjct: 437 DFGRGISPEFIEHLFDRFTQSDSPDNRRHGGLGLGLSIVKHLAELHGGGVEAYSAGTGEG 496

Query: 802 TLIEIIF 808
           T I +  
Sbjct: 497 TTITVTL 503



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/274 (9%), Positives = 85/274 (31%), Gaps = 10/274 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ++  G   +++  + + +G    +++G  + + +    +D          +  TW G+  
Sbjct: 163 LERDGCFTDVNPAMARLLGRTRQEVLGRSISEFAPPGWVDFVRDKTVDSGQSATWQGEFP 222

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           L    G   +V ++ +            G R      ++          + L+++ +   
Sbjct: 223 LMRPSG--QWVYLEWSISAHVE-----PGLRMALAADISERVELDSRRQEVLEREQAARA 275

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
             ++   + +     +  +   P +                +        +  + ++   
Sbjct: 276 TAERLSRTKDDFIAVLSHELRTPLNAIAGWVHILKRRGGTPELIKGLDSIHRNVKAQARI 335

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS-LSAYFDEGENLTPETVD 327
           + +  D   IN  +   ++ +       + + + L        L      GE++ P  +D
Sbjct: 336 ISDILDVSRINSGKLHLEREWTQPAEVVRSAIDALQASIAEKHLEIVLTAGEDIGPAWLD 395

Query: 328 --KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDD 359
             +    F+      + ++N S  +        D
Sbjct: 396 PTRFQQIFWNLLTNAIKFSNDSGRIDVSMSRAGD 429



 Score = 48.9 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/299 (8%), Positives = 61/299 (20%), Gaps = 26/299 (8%)

Query: 181 FGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV 240
             +V  N V     A   R     +   E       +  +           P +      
Sbjct: 18  VLVVDDNPVTRYSTARIVRAAGFQTEEAESGAQALQMAGQGISAVVLDVHLPDI------ 71

Query: 241 SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF 300
               + +A    +   E    L     S         +         Y       +    
Sbjct: 72  ----DGFAVCRALRAREDTAQLPVMHLSAAHVHAEDRVTGLNAGADAYLTHPVEPAVLVG 127

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDD 359
              +     +        +        +       +   G     NP+   L      + 
Sbjct: 128 TLQALIRARTAEDSLRRSDRRFRAIYSQALSGIGLLERDGCFTDVNPAMARLLGRTRQEV 187

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
           +  +        +                              ++ + +       I   
Sbjct: 188 LGRS-------ISEFAPPGWVDFVRDKTVDSGQSATWQGEFPLMRPSGQWVYLEWSISAH 240

Query: 420 KANQFPENMPQNGIEPEDVDTRIN-----KRKMEIEVMQLCSILEATSDGIAIINREGI 473
                   +  +  E  ++D+R       ++       +L    +   D IA+++ E  
Sbjct: 241 VEPGLRMALAADISERVELDSRRQEVLEREQAARATAERLSRTKD---DFIAVLSHELR 296


>gi|293372990|ref|ZP_06619359.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f]
 gi|292632058|gb|EFF50667.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f]
          Length = 820

 Score =  311 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 104/490 (21%), Positives = 184/490 (37%), Gaps = 33/490 (6%)

Query: 338 HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397
            G + +AN  FL        +DI      +    A  +    A                 
Sbjct: 202 DGTIIFANRRFLYNHGISENEDISQLKIYN---VAADMPTQEAWNERCKDVIHGGSSNFV 258

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
           A   +       +   T       +             +  +    + +++     + + 
Sbjct: 259 AHHPSKINKGILAYEGTMYNVTNDSGEESYWSFA---HDISERIRYEAQIKRLNQIMDTT 315

Query: 458 LEATSDGIAI--INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           +     GI +  IN +   +  NR           D + K    F              +
Sbjct: 316 INNLPAGIVVKEINNDFRYIYRNREAYNR-DLYKNDPVGKNDFDFYPPIVAEKKRQEDIQ 374

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNKL 571
           + +      L     G  +   ++ L     ++               DI+E +  K +L
Sbjct: 375 VATTGK--GLHWTAEGKDRNGNMIILDKRKIRVDGDELSSPIIVSIEWDITELEMIKREL 432

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
             +K+ AE   S KS FLA +SHEIRTPL AI+GFS +I               Y N ++
Sbjct: 433 QSSKEKAEMSDSLKSAFLANMSHEIRTPLNAIVGFSHLIAESD----DAEERKTYYNIVN 488

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA--ISLVQLYANEKRILIRTS 689
            +   +L ++N++LD+SKIESG +   F P SL     E     + +     + + +   
Sbjct: 489 ANNERLLQLINEILDLSKIESGTIEFSFGPASLHNLCREVHDAHIFRT---PQGVSLVYE 545

Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-SNEEVILRVRDTGVGM 748
            ++    I  D   V Q+  N++ NA+ FT  G    IS  +  ++ +++  V DTG G+
Sbjct: 546 SSDESLMIETDKNRVFQVISNLIGNAVKFTKEGS---ISYGYKLADNQIVFHVTDTGTGI 602

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
              ++ +  + F ++ N      +GTGLGL + K++V+   GK  + S   KGT      
Sbjct: 603 EPEKVGRVFERFAKLNN----HAQGTGLGLSICKSIVERLGGKISVSSEFGKGTTFTFTL 658

Query: 809 PLYDTSHPHD 818
           P Y  ++P +
Sbjct: 659 P-YTIANPAN 667



 Score = 48.9 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/281 (11%), Positives = 80/281 (28%), Gaps = 18/281 (6%)

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDI 360
           +Y       ++    ++             I  + Y+     +          Y  V   
Sbjct: 43  QYRDITQRSNVKRQLEQANLTLRAIQKVAQIGQWTYNTKQNIFH------YLGYTGVLCE 96

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
           E    L+       + + +    +   R +   +   +  + ++ N E    M    + +
Sbjct: 97  ENVQNLAIEKYVELIVEEDRQSFMEWCRVNEKELNMESISYRVRLNGE-IFYMRIQTYLR 155

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
             +   +    G      D     +    ++  L   +    + I     +G I+  NR 
Sbjct: 156 EQRSDGSFNIEGYIQNITDI----QHRRNDINTLTHAINNAKESIFAAKPDGTIIFANRR 211

Query: 481 VSKLFGYPVEDILRK--PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
                G    + + +   + V  +  T    N    +++       +        K   +
Sbjct: 212 FLYNHGISENEDISQLKIYNVAADMPTQEAWNERCKDVIHGGSSNFVAHHPSKINK--GI 269

Query: 539 LSLRIIIKKLPFSSC---YSLTMHDISEWKQEKNKLSHAKK 576
           L+    +  +   S    Y    HDISE  + + ++    +
Sbjct: 270 LAYEGTMYNVTNDSGEESYWSFAHDISERIRYEAQIKRLNQ 310


>gi|321315157|ref|YP_004207444.1| sporulation-specific ATP-dependent protein histidine kinase
           [Bacillus subtilis BSn5]
 gi|320021431|gb|ADV96417.1| sporulation-specific ATP-dependent protein histidine kinase
           [Bacillus subtilis BSn5]
          Length = 606

 Score =  311 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 104/509 (20%), Positives = 203/509 (39%), Gaps = 36/509 (7%)

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364
           H   P+         +     V+  P P  +   G + Y N + L +   KS D I    
Sbjct: 128 HEIEPASPESTTYITDDYERLVENLPSPLCISVKGKIVYVNSAMLSMLGAKSKDAIIGKW 187

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA-MTFIPFEKANQ 423
                    +  D    + + + +     +         + +       +   P    N+
Sbjct: 188 SYE--FIEEEYHDIVKNRIIRMQKGMEVGM---IEQTWKRLDGTPVHLEVKASPTVYKNK 242

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
             E +       +    +  +  ++    +   +++ + D IA+I   G  +  N +   
Sbjct: 243 QAELLLLI----DISSRKKFQTILQKSRERYQLLIQNSIDTIAVI-HNGKWVFMNESGIS 297

Query: 484 LFGY-PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
           LF     ED++ K     L       +   +  I        + K +   T + +++   
Sbjct: 298 LFEAATYEDLIGKNIYDQLHPCDHEDVKERIQNIAEQKTESEIVKQSWF-TFQNRVIYTE 356

Query: 543 IIIKKLP--FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
           ++         +   + + DISE KQ +  +  ++K++           A ++HEIR PL
Sbjct: 357 MVCIPTTFFGEAAVQVILRDISERKQTEELMLKSEKLSIA-----GQLAAGIAHEIRNPL 411

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
           TAI GF +++K    G         Y + +    + +  I+++LL ++K +   +    E
Sbjct: 412 TAIKGFLQLMKPTMEGNE------HYFDIVFSELSRIELILSELLMLAKPQQNAVK---E 462

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720
            ++L + + E  +L++  AN   I IRTS+  +   I  D   +KQ+ +N++ NA+   P
Sbjct: 463 YLNLKKLIGEVSALLETQANLNGIFIRTSYEKDSIYINGDQNQLKQVFINLIKNAVESMP 522

Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
            GG + I  T      V + V+D G G+    L +  +PF         + +GTGLGL +
Sbjct: 523 DGGTVDIIIT-EDEHSVHVTVKDEGEGIPEKVLNRIGEPFLTT------KEKGTGLGLMV 575

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
              +++ + G  ++ S P KGT  +I FP
Sbjct: 576 TFNIIENHQGVIHVDSHPEKGTAFKISFP 604


>gi|295676712|ref|YP_003605236.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1002]
 gi|295436555|gb|ADG15725.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1002]
          Length = 656

 Score =  311 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 94/520 (18%), Positives = 181/520 (34%), Gaps = 19/520 (3%)

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPI--PFFVYSHGNLFYANPSFLLLTKYKSVDDIE 361
                 + +A            V        F + + G +   N     L  Y   + + 
Sbjct: 14  EPARVQAEAAPSTPVGVDYSSLVQAISDYAIFLLDAKGYIVSWNAGAQKLNGYTESEIVG 73

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                S       ++       +                  ++ +     +   +     
Sbjct: 74  Q--HFSRFYTDEAIARGWPDYELEQAALTGR---FEDEGWRVRKDGTTFWS-NVVITAIR 127

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNRA 480
           N+  E      I  +    R     +     +   ++++  D  I +++ +G ++S N  
Sbjct: 128 NEQGEATGFAKITRDLTAQREYLEALRQSEERFRLLVDSVKDYAIFMLDPQGFVVSWNSG 187

Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
            +++ GY  ++I+ + F++F      +       E+       T+E       K+     
Sbjct: 188 AARIKGYTHDEIVGRHFSLFYVPEEAAAGKPA-RELAIARQIGTVEDEGWRVRKDGSTFW 246

Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
             +II  +   S                      ++  E+      +FLA ++HE+R PL
Sbjct: 247 ANVIITAVYDESRRLRGF----AKVTRDLTERRRREELERSGVRMREFLATLAHELRNPL 302

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
             +      ++ +        R  +    IDR    +  +V+DLLDI +I S K+ L   
Sbjct: 303 APVRNAVGTMQMEANLSPVVARARDL---IDRQVTHLTRLVDDLLDIGRIMSDKVELRIA 359

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720
            V L E V+ AI   + + + +   +     +    I  D+  + Q+  N+L NA  F+P
Sbjct: 360 RVDLAELVARAIEAARPFTDSREQRVVAQVTDVPVSIRGDMTRLVQVLQNLLHNASKFSP 419

Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
           +G  I +          +L VRD G G+    L+K  + F Q    Q     G G+GL L
Sbjct: 420 NGSVIEMQ-GRVDFRMAVLEVRDAGCGIPVRSLDKIFELFAQEKEGQNFGEGGLGIGLTL 478

Query: 781 AKAMVDANMGKFYIFST-PAKGTLIEIIFPLYDTSHPHDC 819
            K++V+ + G     S  P  G+   +  PL   S   + 
Sbjct: 479 CKSLVEMHGGSIVASSEGPGLGSTFTLSLPLSAQSDTAES 518



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/306 (10%), Positives = 84/306 (27%), Gaps = 11/306 (3%)

Query: 47  DSFEQSNFTDQNQESVSNTNYLDS----ENTFVFDPIPRTVRFTWNIDAHGYLKEISEEL 102
           +  E + F    ++  +   YL++    E  F            + +D  G++   +   
Sbjct: 129 EQGEATGFAKITRDLTAQREYLEALRQSEERFRLLVDSVKDYAIFMLDPQGFVVSWNSGA 188

Query: 103 PKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ--NTWYGKTTLWPIEGTNLYVP 160
            +  G    +++G                   +L   +   T   +      +G+  +  
Sbjct: 189 ARIKGYTHDEIVGRHFSLFYVPEEAAAGKPARELAIARQIGTVEDEGWRVRKDGSTFWAN 248

Query: 161 IDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG--KRLDKKFSHLHEIKKGHSSVE 218
           + + A  +Y  +R   GF         R   +       +  +   +  HE++   + V 
Sbjct: 249 VIITA--VYDESRRLRGFAKVTRDLTERRRREELERSGVRMREFLATLAHELRNPLAPVR 306

Query: 219 KEKYDI-FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHT 277
                +       P   R ++ +     +     D L      +    E  +   +    
Sbjct: 307 NAVGTMQMEANLSPVVARARDLIDRQVTHLTRLVDDLLDIGRIMSDKVELRIARVDLAEL 366

Query: 278 INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS 337
           +       + +  + +         +       ++      +NL        P    +  
Sbjct: 367 VARAIEAARPFTDSREQRVVAQVTDVPVSIRGDMTRLVQVLQNLLHNASKFSPNGSVIEM 426

Query: 338 HGNLFY 343
            G + +
Sbjct: 427 QGRVDF 432



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/226 (10%), Positives = 67/226 (29%), Gaps = 18/226 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLC-----DVSDILHIDPNNHIGDLLKRQ 140
            + +DA GY+   +    K  G    +++G         +       D       L    
Sbjct: 44  IFLLDAKGYIVSWNAGAQKLNGYTESEIVGQHFSRFYTDEAIARGWPDYELEQAAL---T 100

Query: 141 NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
             +  +      +GT  +  + + A  I +   E +GF    I        +     ++ 
Sbjct: 101 GRFEDEGWRVRKDGTTFWSNVVITA--IRNEQGEATGFAK--ITRDLTAQREYLEALRQS 156

Query: 201 DKKFSHLHEIKKGHSS--VEKEKYDIFSQQSPPPHLRMK-NKVSSLTEYYAHKDDVLKTE 257
           +++F  L +  K ++   ++ + + +              +++        +  +     
Sbjct: 157 EERFRLLVDSVKDYAIFMLDPQGFVVSWNSGAARIKGYTHDEIVGRHFSLFYVPEEAAAG 216

Query: 258 KYPLLTSEESSLPEQEDFHTI---NLNQYTKKQYFGTLQNNSKESF 300
           K     +    +   ED       + + +        + + S+   
Sbjct: 217 KPARELAIARQIGTVEDEGWRVRKDGSTFWANVIITAVYDESRRLR 262


>gi|116749295|ref|YP_845982.1| multi-sensor signal transduction histidine kinase [Syntrophobacter
           fumaroxidans MPOB]
 gi|116698359|gb|ABK17547.1| PAS/PAC sensor signal transduction histidine kinase
           [Syntrophobacter fumaroxidans MPOB]
          Length = 869

 Score =  311 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 96/569 (16%), Positives = 205/569 (36%), Gaps = 41/569 (7%)

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
            L +                          +SF  ++       ++   E +      +D
Sbjct: 322 RLRDHALAIGRGQGGEPAPAVGPAELGELADSFNRMAETLRSRETSLL-EAQRRLTAIMD 380

Query: 328 KCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
                F+ +       + N + L        +      G S L   P ++ +        
Sbjct: 381 SIADGFYTLDREWRFTHINDAALAYFGKTREE----VAGRSILDVFPGVAGSVFEAAYRR 436

Query: 387 YRSDRTCIAASAR-------LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
                      A        +    +     L   F    +     E + +     ++++
Sbjct: 437 ALETGESQYLEAASVVTGRMIEIFVYPGPEHLTALFRDISERKWMEEELRR---SRDELE 493

Query: 440 TRINKRKME-----IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
            R+ +R  E      ++ +  ++L+   D I + + +  ++  NR   + +G+   + L 
Sbjct: 494 RRVLERTAELVNANKQLGEKAALLDLAHDAILVRDADEKVVFWNRGAEETYGWSESEALG 553

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC- 553
           KP    L    P         +L  +     E   + + ++ + + +          S  
Sbjct: 554 KPVRELLGTRFPLPWEQIKATLLKENG---WEGELVHTAEDGRRVVVNSRWALQRDGSGQ 610

Query: 554 ---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
                    DI+  K+ +++L    +     +    +F    SH+++ PL  I  + + +
Sbjct: 611 PVGILEINRDITGRKKAEDELKAYAERLALINQELEEFAFVASHDLQEPLRKIKTYGD-L 669

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
             +R  P  +   + +   + RS + +  ++NDLL  S++ + +    F+ + L E V E
Sbjct: 670 LQKRCAPCLDDAGLGFLERMLRSADRMRRLLNDLLQYSRVAAKQEP--FKEIQLGEVVRE 727

Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG-QIIIST 729
           A ++ +  A    I IR      +P I AD   + ++  N++ NA+ F  +   Q+ IS 
Sbjct: 728 AANVFEQRAGGL-IEIR-----KLPTIEADESQMLRLFQNLIGNALKFCGAASPQVKISA 781

Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
                    + V D G+G   +  E+  KPF ++    +   EGTG+GL + + +V+ + 
Sbjct: 782 KCDHKGGCEIHVEDNGIGFEQHYAERIFKPFQRLHG--RDEYEGTGMGLAICRKIVERHG 839

Query: 790 GKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
           G   + S P KG+   I  P+     P +
Sbjct: 840 GNIRVESEPGKGSTFIIRLPVRQ-HGPEE 867



 Score = 54.3 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 23/241 (9%), Positives = 61/241 (25%), Gaps = 7/241 (2%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           DA   +   +    +T G    + +G  + ++       P   I   L ++N W G+   
Sbjct: 528 DADEKVVFWNRGAEETYGWSESEALGKPVRELLGTRFPLPWEQIKATLLKENGWEGELVH 587

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
              +G    V ++         + +  G     I              K   ++ + +++
Sbjct: 588 TAEDGR--RVVVNSRWALQRDGSGQPVGI--LEINRDITGRKKAEDELKAYAERLALINQ 643

Query: 210 IKKGHSSVEKEKY-DIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
             +  + V      +   +      L  K     L +      + +      +       
Sbjct: 644 ELEEFAFVASHDLQEPLRKIKTYGDLLQKRCAPCLDDAGLGFLERMLRSADRMRRLLNDL 703

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
           L             + + Q    ++  +    +              +  E+        
Sbjct: 704 LQYSRV--AAKQEPFKEIQLGEVVREAANVFEQRAGGLIEIRKLPTIEADESQMLRLFQN 761

Query: 329 C 329
            
Sbjct: 762 L 762



 Score = 46.6 bits (109), Expect = 0.019,   Method: Composition-based stats.
 Identities = 29/364 (7%), Positives = 86/364 (23%), Gaps = 25/364 (6%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD-ILHIDPNNHIGDLLKRQNTWYG 145
           + +D       I++      G    ++ G  + DV   +            L+   +   
Sbjct: 387 YTLDREWRFTHINDAALAYFGKTREEVAGRSILDVFPGVAGSVFEAAYRRALETGES-QY 445

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF-GIVHVNRVDNDPR---------- 194
                 + G  + + +      + +  R+ S  +     +  +R + + R          
Sbjct: 446 LEAASVVTGRMIEIFVYPGPEHLTALFRDISERKWMEEELRRSRDELERRVLERTAELVN 505

Query: 195 --------ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY 246
                   A    L      + +  +      +   + +         +   ++      
Sbjct: 506 ANKQLGEKAALLDLAHDAILVRDADEKVVFWNRGAEETYGWSESEALGKPVRELLGTRFP 565

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
              +       K      E     E      +N     ++   G      + + +    +
Sbjct: 566 LPWEQIKATLLKENGWEGELVHTAEDGRRVVVNSRWALQRDGSGQPVGILEINRDITGRK 625

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDI--EIAG 364
                   + E   L  + +++       +          ++  L + +    +     G
Sbjct: 626 KAEDELKAYAERLALINQELEEFAF-VASHDLQEPLRKIKTYGDLLQKRCAPCLDDAGLG 684

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA-SARLHTIQWNRENSLAMTFIPFEKANQ 423
            L  +L +           +   R           +L  +     N          +  +
Sbjct: 685 FLERMLRSADRMRRLLNDLLQYSRVAAKQEPFKEIQLGEVVREAANVFEQRAGGLIEIRK 744

Query: 424 FPEN 427
            P  
Sbjct: 745 LPTI 748


>gi|329965407|ref|ZP_08302331.1| PAS domain S-box protein [Bacteroides fluxus YIT 12057]
 gi|328522199|gb|EGF49313.1| PAS domain S-box protein [Bacteroides fluxus YIT 12057]
          Length = 894

 Score =  311 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 103/483 (21%), Positives = 176/483 (36%), Gaps = 28/483 (5%)

Query: 335 VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394
           V+  G L + N  F          DI         L +    + +  +     +   T  
Sbjct: 265 VHEDGTLIFGNRCFKERHGIGDTQDITKLKIYD--LPSYGRDEKSWKEFAESVKRGDTAQ 322

Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
                          ++                        +      ++++++     L
Sbjct: 323 GYIVHNPLPLCPEVLAIEGNAYWVTSDKGEGTVWTFG---RDVTSRIRHEQQVKRFNRIL 379

Query: 455 CSILEATSDGIAIINREGIILST--NR-AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
             I+E    GI + +          NR + ++  G  + + L K    F    T      
Sbjct: 380 DKIIENLPAGIVVKDISNNFKYIYRNRESYNR--GIKMTEALGKDDFDFYPLETAKRKRE 437

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLR---IIIKKLPFSSCYSLTMHDISEWKQEK 568
              +I                    K + L    + I+   FS        DI+E ++ K
Sbjct: 438 QDIKIAETGKEMHWTAEEH--DINGKSIYLDKRKMKIESSEFSPILLSIEWDITEMERMK 495

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
            +L  AK+ AE     KS FLA +SHEIRTPL AI+GFS +I             + Y  
Sbjct: 496 RELLVAKEKAEASDQLKSAFLANMSHEIRTPLNAIVGFSRIIAE----STDADERLNYYE 551

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            +  +   +L ++N++LD+SKIE+G +     PV L     E          +  + +  
Sbjct: 552 IVAVNNERLLQLINEILDLSKIEAGIVEFTITPVRLHSLCKEIYDAHVFRCPQ-GVELIY 610

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-TSNEEVILRVRDTGVG 747
             ++    I  D   + Q+  N++ NA  FT +G    IS  +    + V+  V DTG G
Sbjct: 611 ESSDEGIVIDGDKNRLFQVVSNLIGNAFKFTTNG---KISYGYHREGDYVVFHVNDTGSG 667

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           +   +L++  + F ++        +GTGLGL + K +++   G   + S   KGT    I
Sbjct: 668 IAADKLDRIFERFVKVNTF----AQGTGLGLSICKTIIERMGGNISVSSEIGKGTTFTFI 723

Query: 808 FPL 810
            PL
Sbjct: 724 LPL 726



 Score = 45.8 bits (107), Expect = 0.034,   Method: Composition-based stats.
 Identities = 25/188 (13%), Positives = 57/188 (30%), Gaps = 21/188 (11%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGI---ILSTNRAVSKLFGYPVEDILRKPFTVFL 501
           +  E     L    +       I+++ GI   I   N     L+    + +L K     +
Sbjct: 6   KNAENTERLLKLTSDTM----IILDKNGICIDIAIYN---VDLWFMKEDKLLGKNLLSLI 58

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDI 561
             +T + +     ++L+   R                 +        PF         DI
Sbjct: 59  PPSTYAQIYPEFHKVLTHKTRSVRNYEMTL-----GNTTYFFKCIMYPFDGMVLCQYRDI 113

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLAR--VSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           +E    K +L    +   +    K+  +     S + +T      G ++++  ++     
Sbjct: 114 TERSLRKLELERKNQELNEI--QKAALIGNWLYSSDTKT--FTYSGHTDILSTEQVQETS 169

Query: 620 NPRYIEYA 627
              Y++  
Sbjct: 170 LDDYLKLI 177


>gi|309388886|gb|ADO76766.1| PAS/PAC sensor signal transduction histidine kinase [Halanaerobium
           praevalens DSM 2228]
          Length = 521

 Score =  311 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 85/480 (17%), Positives = 190/480 (39%), Gaps = 24/480 (5%)

Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML---YRSDRTCIAASARL 400
            N         +  D +      S L      +     + V      +  +  +   + +
Sbjct: 31  VNQKMADFCSCQRSD-LRGKPIASILNSQELKTVKKFNQEVFAEGKRKKAKIELEVESEM 89

Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
             I+ +               N   E      +  +  +    + K+     +  SI + 
Sbjct: 90  RMIEVD----------VIPHHNVNGEVDYLLCLAEDITEELKQEEKLYRATKRYRSIFKN 139

Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520
                 + +RE  I+  N    ++FG+  ++++ + F + +  ++ S +   +  +   +
Sbjct: 140 APLAFVVSDRETNIIDWNDKAEEIFGWKKDEVIGEKFNLIVAADSYSKITDLIVNVFENN 199

Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKK 576
               + K      K+   L        +   +           DISE  + + ++ + K+
Sbjct: 200 ESYNVHK---NIAKDGSELYCEWNTALIKDRNDKILEIISIAQDISEKIKIQKRIKNQKE 256

Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP-RYIEYANYIDRSGN 635
              + +  ++ F A +SHE++TPL  I    ++++ +         ++ +Y + I  +G 
Sbjct: 257 KL-EYNQLRTIFFANISHELKTPLNLIFSSLQILEYKLASEDHLENKFDKYLSSIKNNGF 315

Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695
            +L +VN+L+DI+KI      LH     + + V   +     Y   K             
Sbjct: 316 RLLRLVNNLIDITKIGVNTFCLHKGNFDIIKLVKSIVKSTADYLETKNRKFIFQSNLESQ 375

Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755
            I  D  +++++ LN++SNA+ FT +G +I++      N E+++ ++DTG+G+       
Sbjct: 376 IIACDPFNLERVILNLISNAVKFTEAGDEILLKIEKIEN-EIVISIKDTGIGIKKENQAI 434

Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
             + F Q+  S   + EG+G+GL LAK++V+ + G+  + S     +   I  P+   + 
Sbjct: 435 IFEEFRQVDQSFNKKREGSGIGLSLAKSIVEMHGGRIELTSEYGVYSKFSIYLPIEKIAA 494


>gi|77164896|ref|YP_343421.1| PAS sensor signal transduction histidine kinase [Nitrosococcus
           oceani ATCC 19707]
 gi|254434009|ref|ZP_05047517.1| PAS fold family [Nitrosococcus oceani AFC27]
 gi|76883210|gb|ABA57891.1| PAS/PAC sensor hybrid histidine kinase [Nitrosococcus oceani ATCC
           19707]
 gi|207090342|gb|EDZ67613.1| PAS fold family [Nitrosococcus oceani AFC27]
          Length = 938

 Score =  311 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 91/530 (17%), Positives = 192/530 (36%), Gaps = 29/530 (5%)

Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLL 350
           ++   +     L+       +  F +   L    +   P   +++   G   Y N + L 
Sbjct: 288 IEREKENKARMLAEEAVNLSTKKFSKQRRLYETVLSNTPDLVYIFDLEGRFTYVNKALLK 347

Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
           +      + +                    I+ V+  +           +     +    
Sbjct: 348 MWGRTWEESVGKTCFELGYEPWHAEMHMREIEQVIKTKK-----PIRGDVPFTGMHGRRI 402

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD-GIAIIN 469
               F+P    +   E +   G   +  + R  +   +    +    LEA+   GI   +
Sbjct: 403 YDYIFMPVLGEDGEVEAI--AGTTRDVTERRKAEEAAQKSEERQRLALEASHSFGIWDWD 460

Query: 470 REGIILSTNRAVSKLFGYPVEDILR----KPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
            +  + + +     LF    E+       +    ++ +N    +   + E L        
Sbjct: 461 IKNDVFTADERFGALFNLSPEEAKEGVKLEQVAQYIHENDFKRVLDVIKEKLQTGGHYKE 520

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
           E          K +S+R  I+         +     DI+  +     L        +   
Sbjct: 521 EYRVRQKDGTIKWVSVRGNIQLDENGEAVRFPGVGVDITLERNAIEAL-------READQ 573

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
            K +FLA ++HE+R PL  +     VIK+                 I+R  + ++ +++D
Sbjct: 574 KKDEFLATLTHELRNPLAPMRNALYVIKSN---SANAEAQTHAHELIERQISQIVRLIDD 630

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703
           L+D+S+I  GK+ +  + V + +A+++A+  VQL   E+   +  +F +N   +  DL  
Sbjct: 631 LMDVSRITRGKIRISKDIVDIQKAITDAVETVQLLIEERNHELILNFPDNPVFVEGDLVR 690

Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI-LRVRDTGVGMTNYELEKAMKPFGQ 762
           + QI  N+++NA  +T   G+I ++        V+ + + D G+G+   +L      F Q
Sbjct: 691 LAQIFSNLINNAAKYTEQKGEIEVNI--RQFGRVVEIEIIDNGIGIAKEKLPFIFDMFSQ 748

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFPLY 811
             +         G+GL L + +V+ + G   + S    +GT   +  P+ 
Sbjct: 749 FEDPLNRSQGVLGIGLTLVEKLVELHGGSVDVESKGINEGTKFTVSLPVS 798



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/127 (14%), Positives = 40/127 (31%), Gaps = 6/127 (4%)

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           ILE  S+ I I++ +  I   N    K+     +  + K F     +        +  ++
Sbjct: 21  ILENISEAIIILDADWAITYMNSHAEKISRKKRQKTIGKNFFHIFPEIKDPTYKKFFRKV 80

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKK 576
           L      T+E            + L I I  +  S    +   + +  K+ +   +   +
Sbjct: 81  LKTRQTDTIEGFYEPQD-----MWLTIKIFPVQ-SGGVGVAFQENTLRKRIEVIAASQSE 134

Query: 577 IAEKESS 583
                  
Sbjct: 135 ALSLALK 141



 Score = 60.0 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/252 (9%), Positives = 59/252 (23%), Gaps = 18/252 (7%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP--NNHIGDLLKRQNT 142
             +  D  G    +++ L K  G    + +G    ++             I  ++K +  
Sbjct: 328 LVYIFDLEGRFTYVNKALLKMWGRTWEESVGKTCFELGYEPWHAEMHMREIEQVIKTKKP 387

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
             G     P  G +     D   +P+   + E     G                 ++ ++
Sbjct: 388 IRGDV---PFTGMHGRRIYDYIFMPVLGEDGEVEAIAG--TTRDVTERRKAEEAAQKSEE 442

Query: 203 KFSHLHEIK----------KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD 252
           +     E            K       E++      SP                + +   
Sbjct: 443 RQRLALEASHSFGIWDWDIKNDVFTADERFGALFNLSPEEAKEGVKLEQVAQYIHENDFK 502

Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
            +       L +      E+      +              + + E+  +       +L 
Sbjct: 503 RVLDVIKEKLQTGG-HYKEEYRVRQKDGTIKWVSVRGNIQLDENGEAVRFPGVGVDITLE 561

Query: 313 AYFDEGENLTPE 324
               E      +
Sbjct: 562 RNAIEALREADQ 573


>gi|308270674|emb|CBX27285.1| hypothetical protein N47_I07050 [uncultured Desulfobacterium sp.]
          Length = 1252

 Score =  311 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 95/510 (18%), Positives = 185/510 (36%), Gaps = 44/510 (8%)

Query: 318  GENLTPETVDKCPIPFFVYSHG--NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
             E       +       +         YANP+   +  Y   D+++  G +   +     
Sbjct: 627  SEARYRTLFEGAAEGILIIEMENRTFQYANPAICKMLGYT-QDELKKMGVMD--IHTESD 683

Query: 376  SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
            S     +  +L R +         +  ++ +     A         +  P ++   G   
Sbjct: 684  SGRVISEFEVLERQNGGLA---TNIPCLRKDGTIIYADFNTTLTSIDGIPCHV---GFIT 737

Query: 436  EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
            +  + + +   ++    +   + E   D   + + EG I+  N AV KL GY  E+ + K
Sbjct: 738  DVTERKKSDDALQESEERFRILFECAPDAYYVHDSEGKIIDGNMAVEKLIGYTKEEYIGK 797

Query: 496  PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL--PFSSC 553
             +      +   ++        +           + + K+ K + + I+   L    +  
Sbjct: 798  SYMELGLLSQEELLKASEYISKNTHDLPAGPDELVINRKDGKQVLVEIMTYPLAIRGNGM 857

Query: 554  YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
                  DI E K  + +L  ++K+              ++H+    LT IIG +E+    
Sbjct: 858  VLGIARDIMEKKSLEQQLRQSQKL-----EAIGILSGGIAHDFNNLLTTIIGNTEL---T 909

Query: 614  RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
                  +    +    I  +G     +   LL  S+    K  L    + L+E   +   
Sbjct: 910  LVDIPKDDPVRQGIEEIMAAGERAASLTRQLLAFSR----KQVLQPTVMYLNETALDMEK 965

Query: 674  LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST---- 729
            ++      + I ++T  A ++ +I AD   ++Q+ +N++ NA    P GG+I I T    
Sbjct: 966  MLCRMI-GEDIELKTILAPDLGQIEADAGQIEQVIMNLVVNARDAMPYGGKITIETENVN 1024

Query: 730  ----------THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
                             V+L + DTGVGM +       +PF         +G+GTGLGL 
Sbjct: 1025 IDDGYAHTHVAVIPGPYVMLSISDTGVGMPDEIKAHIFEPFFTTKV----KGKGTGLGLS 1080

Query: 780  LAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
                ++  + G  +++S P KGT  +I  P
Sbjct: 1081 TVYGIIKQSNGNIWVYSEPGKGTTFKIYLP 1110



 Score = 71.2 bits (173), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 17/185 (9%), Positives = 47/185 (25%), Gaps = 10/185 (5%)

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDV---DTRINKRKMEIEVMQLCSILEATSDG 464
           E    +  +           M       +     +   +   +     +  S +++  +G
Sbjct: 289 EQLWVIIILVGSLFAGTGTGMSLIWRHRQSRYYREKFESAEALRASEARYHSTIDSMMEG 348

Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
             II+ +   +  N    +      E++L    T     N    +   +   +       
Sbjct: 349 CQIIDYDWRCIYVNDESLRQSRRTKEELLGHKITDVYPANME--IADIIKRCMDERCPGF 406

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
           +E        ++    L +            +   DI+  KQ   +         +    
Sbjct: 407 IESEIAYPDGDKAWFYLSLRPVP----EGLFILSMDITAQKQA-QEREKHLNAIMRAIRK 461

Query: 585 KSDFL 589
            +  +
Sbjct: 462 VNQLI 466



 Score = 67.7 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 18/145 (12%), Positives = 49/145 (33%), Gaps = 1/145 (0%)

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI-ILSTNRAVSKLFGYPVEDI 492
             ++   R   + +     +  ++ E  ++GI II  E       N A+ K+ GY  +++
Sbjct: 611 IEQEEKQRQMVKDLSYSEARYRTLFEGAAEGILIIEMENRTFQYANPAICKMLGYTQDEL 670

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
            +        ++    +      +   +         L              +  +    
Sbjct: 671 KKMGVMDIHTESDSGRVISEFEVLERQNGGLATNIPCLRKDGTIIYADFNTTLTSIDGIP 730

Query: 553 CYSLTMHDISEWKQEKNKLSHAKKI 577
           C+   + D++E K+  + L  +++ 
Sbjct: 731 CHVGFITDVTERKKSDDALQESEER 755



 Score = 45.4 bits (106), Expect = 0.045,   Method: Composition-based stats.
 Identities = 20/156 (12%), Positives = 44/156 (28%), Gaps = 9/156 (5%)

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIE 361
                         E E       +  P  ++V+   G +   N +   L  Y   + I 
Sbjct: 737 TDVTERKKSDDALQESEERFRILFECAPDAYYVHDSEGKIIDGNMAVEKLIGYTKEEYIG 796

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
            +     LL     S    +K       +   + A      I       + +  +     
Sbjct: 797 KSYMELGLL-----SQEELLKASEYISKNTHDLPAGPDELVINRKDGKQVLVEIM--TYP 849

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
                N    GI  + ++ +  ++++     +L +I
Sbjct: 850 LAIRGNGMVLGIARDIMEKKSLEQQLRQS-QKLEAI 884


>gi|322516693|ref|ZP_08069602.1| sensor histidine kinase VicK [Streptococcus vestibularis ATCC
           49124]
 gi|322124726|gb|EFX96164.1| sensor histidine kinase VicK [Streptococcus vestibularis ATCC
           49124]
          Length = 446

 Score =  311 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 89/420 (21%), Positives = 172/420 (40%), Gaps = 36/420 (8%)

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT-RINKRKMEIEVMQLCSIL 458
           +  +    ++ +A  +    +     E +       +  D  R+    +  E  +L S+L
Sbjct: 40  IRKLTKRVKSLMAGNYNEKLRIKGDSELLELADRLNDLSDVFRLTHENLAQEKNRLSSVL 99

Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
              SDG+   NR G I   N    +L     E   +      L+   P   +  L     
Sbjct: 100 SYMSDGVIATNRRGQITMINSTAQRLLNLDRESATQMSILDLLDGENPYTYSELL----- 154

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHA 574
               +T E         ++ ++LR+    +   S +       +HD +E ++E+ +    
Sbjct: 155 ---SKTPEIHLSRRDANDEFVTLRVNFALIRKESGFISGLVAVLHDATEQEKEERERRL- 210

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
                        F++ VSHE+RTPLT++  + E +     G L       +        
Sbjct: 211 -------------FVSNVSHELRTPLTSVKSYLEAL---DDGALHEEIAPNFIKVSLDET 254

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV-----QLYANEKRILIRTS 689
           N ++ +++DLL +S+I++    L  E  +    ++  ++       Q     K   I   
Sbjct: 255 NRMMRMISDLLALSRIDNKSTQLDVEMTNFTAFMTYILNRFDQIKSQETNPGKFYEIIRD 314

Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749
           ++ N   +  D   + ++  NIL+NAI ++P GG+I +S   T + ++I+ + D G+G+ 
Sbjct: 315 YSVNSIWVEIDTDKMTRVVDNILNNAIKYSPDGGKITVSMKTTDS-QLIVSISDQGLGIP 373

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             +L      F ++  ++     GTGLGL +AK +V  + G  +  S   KG+   I+ P
Sbjct: 374 KKDLPLIFDRFYRVDKARSRAQGGTGLGLSIAKEIVKQHKGFIWAKSEYGKGSTFTIVLP 433


>gi|317130981|ref|YP_004097263.1| multi-sensor signal transduction histidine kinase [Bacillus
           cellulosilyticus DSM 2522]
 gi|315475929|gb|ADU32532.1| multi-sensor signal transduction histidine kinase [Bacillus
           cellulosilyticus DSM 2522]
          Length = 608

 Score =  311 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 85/402 (21%), Positives = 172/402 (42%), Gaps = 33/402 (8%)

Query: 424 FPENMPQNGIEPEDVDTRINKRK--MEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
             + + Q       +  ++ +     E E  +L S+L   +DG+   +R G ++  N+  
Sbjct: 233 GDDEIGQLASAFNVLTKKLQEANETTEGEKRKLSSVLTHMTDGVIATDRLGKVILMNKRA 292

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
            +L G+  +D+L    T  L  +    ++               + I L    +E+ + L
Sbjct: 293 EQLLGHMQDDVLGIEITKILNLDKFLTLDDLY---------TFKDPILLDFDSDEEEVIL 343

Query: 542 RIIIKKLP----FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
                 +       +     +HD++                E+    + +F+A VSHE+R
Sbjct: 344 EAHFSVIEKEAGAQNGLIAVLHDVT--------------EQERIEEERREFVANVSHELR 389

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TPLT++  + E + +       +     + +        ++ +VNDLL +SK++S   ++
Sbjct: 390 TPLTSMKSYLEALADGAIN--DSEVAPRFIHVTQTETERMIRLVNDLLQLSKMDSKDYSM 447

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILADLRSVKQIALNILSNAI 716
           +   ++L + + + I   ++    + I  +     N    +  D   + Q+  NILSNA+
Sbjct: 448 NVVEINLPQFMDQIIERFEMATKNESISFKRRLTVNTDIIVFGDRDKLTQLLDNILSNAV 507

Query: 717 HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
            ++P GG I+ S     +  VI+ ++D GVG+    +      F ++  ++     GTGL
Sbjct: 508 KYSPEGGTILCSLKIAKDN-VIVSIKDEGVGIPKENIPYVFDRFYRVDKARSRNLGGTGL 566

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
           GL +AK +V A+ G  ++ S   +GT I    P  +  + +D
Sbjct: 567 GLAIAKEIVHAHGGSIWVSSDWGRGTTISFSLPFDEAVNVND 608


>gi|237721041|ref|ZP_04551522.1| two-component system sensor histidine kinase/response regulator
           [Bacteroides sp. 2_2_4]
 gi|229449876|gb|EEO55667.1| two-component system sensor histidine kinase/response regulator
           [Bacteroides sp. 2_2_4]
          Length = 885

 Score =  311 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 104/490 (21%), Positives = 184/490 (37%), Gaps = 33/490 (6%)

Query: 338 HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397
            G + +AN  FL        +DI      +    A  +    A                 
Sbjct: 267 DGTIIFANRRFLYNHGISENEDISQLKIYN---VAADMPTQEAWNERCKDVIHGGSSNFV 323

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
           A   +       +   T       +             +  +    + +++     + + 
Sbjct: 324 AHHPSKINKGILAYEGTMYNVTNDSGEESYWSFA---HDISERIRYEAQIKRLNQIMDTT 380

Query: 458 LEATSDGIAI--INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           +     GI +  IN +   +  NR           D + K    F              +
Sbjct: 381 INNLPAGIVVKEINNDFRYIYRNREAYNR-DLYKNDPVGKNDFDFYPPIVAEKKRQEDIQ 439

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNKL 571
           + +      L     G  +   ++ L     ++               DI+E +  K +L
Sbjct: 440 VATTGK--GLHWTAEGKDRNGNMIILDKRKIRVDGDELSSPIIVSIEWDITELEMIKREL 497

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
             +K+ AE   S KS FLA +SHEIRTPL AI+GFS +I               Y N ++
Sbjct: 498 QSSKEKAEMSDSLKSAFLANMSHEIRTPLNAIVGFSHLIAESD----DAEERKTYYNIVN 553

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA--ISLVQLYANEKRILIRTS 689
            +   +L ++N++LD+SKIESG +   F P SL     E     + +     + + +   
Sbjct: 554 ANNERLLQLINEILDLSKIESGTIEFSFGPASLHNLCREVHDAHIFRT---PQGVSLVYE 610

Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-SNEEVILRVRDTGVGM 748
            ++    I  D   V Q+  N++ NA+ FT  G    IS  +  ++ +++  V DTG G+
Sbjct: 611 SSDESLMIETDKNRVFQVISNLIGNAVKFTKEGS---ISYGYKLADNQIVFHVTDTGTGI 667

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
              ++ +  + F ++ N      +GTGLGL + K++V+   GK  + S   KGT      
Sbjct: 668 EPEKVGRVFERFAKLNN----HAQGTGLGLSICKSIVERLGGKISVSSEFGKGTTFTFTL 723

Query: 809 PLYDTSHPHD 818
           P Y  ++P +
Sbjct: 724 P-YTIANPAN 732



 Score = 48.9 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/281 (11%), Positives = 80/281 (28%), Gaps = 18/281 (6%)

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDI 360
           +Y       ++    ++             I  + Y+     +          Y  V   
Sbjct: 108 QYRDITQRSNVKRQLEQANLTLRAIQKVAQIGQWTYNTKQNIFH------YLGYTGVLCE 161

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
           E    L+       + + +    +   R +   +   +  + ++ N E    M    + +
Sbjct: 162 ENVQNLAIEKYVELIVEEDRQSFMEWCRVNEKELNMESISYRVRLNGE-IFYMRIQTYLR 220

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
             +   +    G      D     +    ++  L   +    + I     +G I+  NR 
Sbjct: 221 EQRSDGSFNIEGYIQNITDI----QHRRNDINTLTHAINNAKESIFAAKPDGTIIFANRR 276

Query: 481 VSKLFGYPVEDILRK--PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
                G    + + +   + V  +  T    N    +++       +        K   +
Sbjct: 277 FLYNHGISENEDISQLKIYNVAADMPTQEAWNERCKDVIHGGSSNFVAHHPSKINK--GI 334

Query: 539 LSLRIIIKKLPFSSC---YSLTMHDISEWKQEKNKLSHAKK 576
           L+    +  +   S    Y    HDISE  + + ++    +
Sbjct: 335 LAYEGTMYNVTNDSGEESYWSFAHDISERIRYEAQIKRLNQ 375



 Score = 48.1 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 24/182 (13%), Positives = 62/182 (34%), Gaps = 12/182 (6%)

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
             IL+ T+D + +++R G+ +        L+    + +L K     L + T   +     
Sbjct: 12  QRILKLTADTMLLVDRHGVCVDIEPH-CDLWFLQEDILLGKNIFELLPEYTRERVMPIFQ 70

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW--KQEKNKLS 572
            +L      +     +    E       +     P+         DI++    + + + +
Sbjct: 71  IVLEEQRSISKNFKLVLK-GETFYFKCLM----FPYDGMVLCQYRDITQRSNVKRQLEQA 125

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
           +    A ++ +    +        +  +   +G++ V+  +    L   +Y+E     DR
Sbjct: 126 NLTLRAIQKVAQIGQWTYNT----KQNIFHYLGYTGVLCEENVQNLAIEKYVELIVEEDR 181

Query: 633 SG 634
             
Sbjct: 182 QS 183


>gi|158338973|ref|YP_001520150.1| chemotaxis response regulator [Acaryochloris marina MBIC11017]
 gi|158309214|gb|ABW30831.1| chemotaxis response regulator, putative [Acaryochloris marina
            MBIC11017]
          Length = 1502

 Score =  311 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 97/554 (17%), Positives = 183/554 (33%), Gaps = 52/554 (9%)

Query: 292  LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLL 350
            L   S+     +         A   E E       D  P+  ++    G+  Y N  +L 
Sbjct: 964  LGEVSRCLVVSVDISQRKLAEAARLESEQRFRSMADHAPVMIWLTEAPGHCTYLNQEWLR 1023

Query: 351  LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
             T       +E  G    +          A +  +  R                 N    
Sbjct: 1024 FTGDSLEQALER-GWQDRIHPEDLEESVAAYQQAVTERQ-----PLRLEYRRCDRNG-TY 1076

Query: 411  LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME---------------------- 448
              +      +     E     G   +    +  +  +E                      
Sbjct: 1077 CWILDTAKPRFLPTGEFAGMIGSCIDISLQKQAEAALELSNLNLEADLAEKDASLHTIEG 1136

Query: 449  ---IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
                   +  S+ +     I + + +G     N+    L G  +E  L   +   +    
Sbjct: 1137 NLQESEARFYSLADNAPVLIWLSDAQGNCTYVNQTWENLTGQSLESQLGDGWLETIHPED 1196

Query: 506  PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDIS 562
               +     E  +   +   E+    +  +     +         +        +  DIS
Sbjct: 1197 RDRVKTLFQESCAQ--QCPFEQEFRQARADGVYRWILATGVPRIAADQFAGLICSCMDIS 1254

Query: 563  EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
            + K  + +L  A +  ++ +     F    SH++R PL  I  F+E++++     L   +
Sbjct: 1255 DIKHSQKRLEQAIQELQRSNQELEQFAYIASHDLREPLRKIQSFAELLQDDLSTKLDQDQ 1314

Query: 623  YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
               Y  YI      +  ++ D+L  S++  G+ +   E + L   +    S + L   E 
Sbjct: 1315 SR-YFGYIMSGAQRMQCLIQDVLQYSRV--GRSDQPLELIDLKHVIEIVQSDLSLAIEES 1371

Query: 683  RILIRTSFANNIPRILADLRSVKQIALNILSNAIHF---TPSGGQIIISTTHTSNEEVIL 739
            + +I      ++P I A    + Q+  N+++NAI F   TP   +I IS         IL
Sbjct: 1372 QAVIEFD---SLPSIHAHTVEITQVFENLINNAIKFRSSTPP--RIQISAEQQPESWTIL 1426

Query: 740  RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
             V+D G+G+    LE+    F ++  S   +  GTG+GL L + ++++  G     S P 
Sbjct: 1427 -VKDNGIGIPEDSLERVFVMFQRLHYSN--QYPGTGIGLALCRKVIESYGGTLTCTSAPG 1483

Query: 800  KGTLIEIIFPLYDT 813
            KG    + FPL   
Sbjct: 1484 KGATFILQFPLQPV 1497



 Score = 94.3 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 59/540 (10%), Positives = 144/540 (26%), Gaps = 45/540 (8%)

Query: 184  VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS-- 241
            +      ++      R  +      +              IF          ++N     
Sbjct: 724  IQELTALSNDIDNLFRSTEIGVVFLDQSLQVRKFTPAANQIFQFLPTDVGRPIRNLAINV 783

Query: 242  ---SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE 298
               SL E  +      K  +  +    +  L     +   +  Q         +    K 
Sbjct: 784  NYPSLIEVLSETARTGKVTEQEINAHGQHLLIRIHPYVDNDNEQQGVVMSIIDITATRKV 843

Query: 299  SFEYLSHRNHPSLSA-YFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKS 356
              E  S R    L+    +  +    +   + P+  +     G +   +  +L    Y  
Sbjct: 844  QIELQSQRIKAKLAQDTLEVFQERYQQLYHETPVMMYSLDARGVIIEVSNFWLSKLGYPR 903

Query: 357  VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
               +     +   L++ K       + +       + ++    +     + E  + +   
Sbjct: 904  NMTLGATVDIFLNLESQKRFQKLWPRFL------ESGLSIDIPMQIQTKSGE-IIDVLQS 956

Query: 417  PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476
               + +   E      +  +    ++ +        +  S+ +     I +    G    
Sbjct: 957  MIAERDDLGEVSRCLVVSVDISQRKLAEAARLESEQRFRSMADHAPVMIWLTEAPGHCTY 1016

Query: 477  TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
             N+   +  G  +E  L + +   +             + ++    Q L        +  
Sbjct: 1017 LNQEWLRFTGDSLEQALERGWQDRIHPEDLEESVAAYQQAVTER--QPLRLEYRRCDRNG 1074

Query: 537  KLLSLRIII----KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
                +              +    +  DIS  KQ +  L  +    E + + K       
Sbjct: 1075 TYCWILDTAKPRFLPTGEFAGMIGSCIDISLQKQAEAALELSNLNLEADLAEKDAS---- 1130

Query: 593  SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL----DIVNDLLDIS 648
                   L  I G  +  + + +    N   + + +    +   V     ++    L+ S
Sbjct: 1131 -------LHTIEGNLQESEARFYSLADNAPVLIWLSDAQGNCTYVNQTWENLTGQSLE-S 1182

Query: 649  KIESGKMN-LHFEPVS-LDEAVSEAISLVQL------YANEKRILIRTSFANNIPRILAD 700
            ++  G +  +H E    +     E+ +           A    +  R   A  +PRI AD
Sbjct: 1183 QLGDGWLETIHPEDRDRVKTLFQESCAQQCPFEQEFRQARADGV-YRWILATGVPRIAAD 1241



 Score = 73.1 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/407 (10%), Positives = 105/407 (25%), Gaps = 51/407 (12%)

Query: 86   TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
             +++DA G + E+S      +G      +G     V   L+++        L  +    G
Sbjct: 879  MYSLDARGVIIEVSNFWLSKLGYPRNMTLGAT---VDIFLNLESQKRFQK-LWPRFLESG 934

Query: 146  KTTLWPIE---GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
             +   P++    +   + +  + +       E S  R   +           A     ++
Sbjct: 935  LSIDIPMQIQTKSGEIIDVLQSMIAERDDLGEVS--RCLVVSVDISQRKLAEAARLESEQ 992

Query: 203  KFSHLHEIKKGHSSVEKEKYD---IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
            +F  + +       + +       +  +        ++  +    +   H +D+ ++   
Sbjct: 993  RFRSMADHAPVMIWLTEAPGHCTYLNQEWLRFTGDSLEQALERGWQDRIHPEDLEESVAA 1052

Query: 260  P-LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD-- 316
                 +E   L  +      N                + E    +      SL    +  
Sbjct: 1053 YQQAVTERQPLRLEYRRCDRNGTYCWILDTAKPRFLPTGEFAGMIGSCIDISLQKQAEAA 1112

Query: 317  ---------------------------EGENLTPETVDKCPIPFFVYSH-GNLFYANPSF 348
                                       E E       D  P+  ++    GN  Y N ++
Sbjct: 1113 LELSNLNLEADLAEKDASLHTIEGNLQESEARFYSLADNAPVLIWLSDAQGNCTYVNQTW 1172

Query: 349  LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
              LT       +   G L T+    +       +                     + +  
Sbjct: 1173 ENLTGQSLESQL-GDGWLETIHPEDRDRVKTLFQESCA-----QQCPFEQEFRQARADGV 1226

Query: 409  NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
                +            +         +  D + +++++E  + +L 
Sbjct: 1227 YRWILATG--VPRIAADQFAGLICSCMDISDIKHSQKRLEQAIQELQ 1271



 Score = 65.4 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 43/411 (10%), Positives = 106/411 (25%), Gaps = 17/411 (4%)

Query: 56   DQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIG 115
            D +Q  ++    L+SE  F        V   W  +A G+   +++E  +  G+   + + 
Sbjct: 976  DISQRKLAEAARLESEQRFRSMADHAPV-MIWLTEAPGHCTYLNQEWLRFTGDSLEQALE 1034

Query: 116  MRLCDVSDILHIDPN-NHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNRE 174
                D      ++ +       +  +     +       GT  Y  I   A P +    E
Sbjct: 1035 RGWQDRIHPEDLEESVAAYQQAVTERQPLRLEYRRCDRNGT--YCWILDTAKPRFLPTGE 1092

Query: 175  FSGFRGFGIVHVNRVDNDPRALG-KRLDKKFSHLHEIKKGHSSVE----KEKYDIFSQQS 229
            F+G  G  I     +     A          + L E      ++E    + +   +S   
Sbjct: 1093 FAGMIGSCI--DISLQKQAEAALELSNLNLEADLAEKDASLHTIEGNLQESEARFYSLAD 1150

Query: 230  PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYF 289
              P L   +       Y     + L  +       +        +        + +    
Sbjct: 1151 NAPVLIWLSDAQGNCTYVNQTWENLTGQSLESQLGDGWLETIHPEDRDRVKTLFQESCAQ 1210

Query: 290  GTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV-DKCPIPFFVYSHGNLFYANPSF 348
                                  +       +     +     I    +S   L  A    
Sbjct: 1211 QCPFEQEFRQARADGVYRWILATGVPRIAADQFAGLICSCMDISDIKHSQKRLEQAIQEL 1270

Query: 349  LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
                   S  ++E    +++      L    +   ++            +R      +  
Sbjct: 1271 QR-----SNQELEQFAYIASHDLREPLRKIQSFAELLQDDLSTKLDQDQSRYFGYIMSGA 1325

Query: 409  NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459
              +        + ++   +     +        I +  + + + +  +++E
Sbjct: 1326 QRMQCLIQDVLQYSRVGRSDQPLELIDLKHVIEIVQSDLSLAIEESQAVIE 1376


>gi|227326661|ref|ZP_03830685.1| aerobic respiration control sensor protein ArcB [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 788

 Score =  311 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 92/440 (20%), Positives = 183/440 (41%), Gaps = 21/440 (4%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L             L+  Q     +     I      +    +  + ++ E
Sbjct: 81  EESRQRLAKLVAKLEEMRHRDLELNA-QLQENIAQLNQEIADRIKAEDARVLVMSRLKEE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
                  + ++E +   L S L+A+ D +   N E      NRA+  L G   + ++   
Sbjct: 140 MSRREQAQIELEQQSALLRSFLDASPDLVYYRNEEKEFSGCNRAMELLVGKSQKQLIGLT 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII--KKLPFSSCY 554
                  +    +     ++   ++  T E+  +     +    LR +    ++      
Sbjct: 200 PQDVYAPDIAEKVMETDEKVFRHNVSLTYEQWLVYPDGRKACFELRKVPFYDRMGKRHGL 259

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+ ++ L +        S  K+ F++ +SHE+RTPL  I+G S ++ + +
Sbjct: 260 MGFGRDITERKRYQDALEN-------ASREKTTFISTISHELRTPLNGIVGLSRILLDTQ 312

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                +P   +Y   I  S   + +I ND++++ K E  K+ L  +P+     + +  +L
Sbjct: 313 L----DPEQQKYLKTIHVSAITLGNIFNDVIEMDKQERRKVQLDNQPIDFTGFLVDLENL 368

Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSG-----GQIIIS 728
             L A  K + +       +P+ ++ D   ++QI  N+LSNA+ FTP G     G+I++ 
Sbjct: 369 GGLLAEPKGLKLIMDQHQPLPQKVMTDGTRLRQILWNLLSNAVKFTPKGENGKKGEIVVR 428

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDA 787
             H   + +   V D+G+G+   ELEK    + Q+ +    +   GTG+GL ++K +   
Sbjct: 429 VWHEKGDRLRFEVEDSGMGIPADELEKIFAMYYQVKDQHGGKPATGTGIGLAVSKRLAQN 488

Query: 788 NMGKFYIFSTPAKGTLIEII 807
             G   + ST  KG+   + 
Sbjct: 489 MGGDIQVSSTQGKGSCFTLT 508



 Score = 41.9 bits (97), Expect = 0.42,   Method: Composition-based stats.
 Identities = 22/226 (9%), Positives = 47/226 (20%), Gaps = 10/226 (4%)

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHT--INLNQYTKKQYFGTLQNNSK 297
           +S + E        L      L       L            LNQ    +          
Sbjct: 73  LSVVVEQLEESRQRLAKLVAKLEEMRHRDLELNAQLQENIAQLNQEIADRIKAEDARVLV 132

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKS 356
            S                ++   L    +D  P   +           N +  LL     
Sbjct: 133 MSRLKEEMSRREQAQIELEQQSALLRSFLDASPDLVYYRNEEKEFSGCNRAMELLVGKSQ 192

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
              I        L      + + A K +           +      + +           
Sbjct: 193 KQLIG-------LTPQDVYAPDIAEKVMETDEKVFRHNVSLTYEQWLVYPDGRKACFELR 245

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
                ++  +     G   +  + +  +  +E    +  + +   S
Sbjct: 246 KVPFYDRMGKRHGLMGFGRDITERKRYQDALENASREKTTFISTIS 291



 Score = 41.9 bits (97), Expect = 0.49,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 37/124 (29%), Gaps = 5/124 (4%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN-TWYGKTTLWPIE 153
               +  +   +G    ++IG+   DV      +      + + R N +   +  L   +
Sbjct: 177 FSGCNRAMELLVGKSQKQLIGLTPQDVYAPDIAEKVMETDEKVFRHNVSLTYEQWLVYPD 236

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
           G       +L  +P Y R  +  G  GFG           +   +   ++ +        
Sbjct: 237 GRKACF--ELRKVPFYDRMGKRHGLMGFG--RDITERKRYQDALENASREKTTFISTISH 292

Query: 214 HSSV 217
               
Sbjct: 293 ELRT 296


>gi|160899786|ref|YP_001565368.1| multi-sensor hybrid histidine kinase [Delftia acidovorans SPH-1]
 gi|160365370|gb|ABX36983.1| multi-sensor hybrid histidine kinase [Delftia acidovorans SPH-1]
          Length = 1287

 Score =  311 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 90/590 (15%), Positives = 196/590 (33%), Gaps = 61/590 (10%)

Query: 253  VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL--SHRNHPS 310
             L      L      + P       ++              ++     +         P 
Sbjct: 596  RLPRGHAHLPAEHRPARP-PAAHPQVDEALRWLPGEPAPAASDEARPMQQDMHGGALPPR 654

Query: 311  LSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
                  +        + +   P +      +     + L     +  D +     +  L 
Sbjct: 655  ARIVCADDNADMRSYIGQLLEPLYEVE---IVGDGRAALASIHRQRPDLVLADVMMPVL- 710

Query: 371  DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA------NQF 424
                    +  + +   RSD T  A    + + +   + +                 +  
Sbjct: 711  --------DGFELLHALRSDETTRAIPVIMLSAR-AGQEAQVEGLRAGADDYLVKPFSAR 761

Query: 425  PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA---- 480
                    +             ++    +L +I++    G+ + +  G ++ +N      
Sbjct: 762  ELLARIASLLQLVSVREQAHAAVQANEKKLRAIIDQMPAGVGVSDMSGTMVLSNAIMDRF 821

Query: 481  ---------VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
                       ++  +   D   +P          ++                     L 
Sbjct: 822  VPRAIPSTLADRMPRWKGWDDKGQPIAPENWPGKRAL----------RGEVVMPGLEMLH 871

Query: 532  STKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
            +  + +   +R+    L       +     + DI+E KQ ++ L       ++    K +
Sbjct: 872  TDDDGREWWMRVSCAPLRDDDGQLIGTCSVIQDITELKQAEHHL-------KEADRRKDE 924

Query: 588  FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
            FLA ++HE+R PL  I    +++K    G   +         ++R  N ++ +V+DLL++
Sbjct: 925  FLATLAHELRNPLAPISHGLQILKRTASG---DDSVRHSHEMLERQVNHMIRMVDDLLEV 981

Query: 648  SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707
            S+I +GK+ L  E V L++ +   ++            +R         +LAD   + Q+
Sbjct: 982  SRITTGKVQLRKELVDLNDVLQGVVAASGAVMEAGSHQLRLELPAAPVSLLADPMRLAQM 1041

Query: 708  ALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
              N+L+NA  ++ SGG I +    T   + ++ VRD G+G+    L K    F Q+  + 
Sbjct: 1042 VSNLLNNAAKYSHSGGHI-VLAAWTDGAQAVVSVRDNGIGIPPALLGKVFDLFMQVDRNG 1100

Query: 768  QIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFPLYDTSHP 816
            +    G G+GL L +++V+ + G     S    +G+   +  PL   + P
Sbjct: 1101 RRGQGGLGIGLTLVRSLVEMHGGSVQALSEGKGQGSEFRLYLPLPTQAEP 1150



 Score =  251 bits (641), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 69/264 (26%), Positives = 114/264 (43%), Gaps = 16/264 (6%)

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           Q   + +   K   +    K+ F + +SHE+RTPLT I+G  E    +  G +   +   
Sbjct: 349 QAYEQEARRAKALAEVDHAKTVFFSNISHELRTPLTLILGPLEDALREHGGQVPAGQT-- 406

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
               I R+   +  +VN LLD S+IE+G+M   +EP  L    +E  S+ +    +  + 
Sbjct: 407 --QMIHRNALRLQKLVNALLDFSRIEAGRMQASYEPTDLARTTAELASMFRSAVEQAGLR 464

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN----------- 734
           +R         +  D    ++I LN+LSNA  FT  G +I ++     +           
Sbjct: 465 LRVDCPPLDGPVHVDRDMYEKIVLNLLSNAFKFTLQG-EIAVALRDVPDVHDAHGAGGAN 523

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
             V L V DTG G+    L    + F +IP       EGTG+GL + + +   + G   +
Sbjct: 524 GAVELSVTDTGSGIAPQHLPHLFQRFHRIPGKPARTHEGTGIGLAMVQELARLHGGTVTV 583

Query: 795 FSTPAKGTLIEIIFPLYDTSHPHD 818
            ST  +G+   +  P      P +
Sbjct: 584 SSTEGEGSRFTVRLPRGHAHLPAE 607



 Score = 41.6 bits (96), Expect = 0.58,   Method: Composition-based stats.
 Identities = 20/219 (9%), Positives = 54/219 (24%), Gaps = 19/219 (8%)

Query: 134  GDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193
               L+ +    G       +       + ++  P+   + +  G     ++         
Sbjct: 855  KRALRGEVVMPGLEM-LHTDDDGREWWMRVSCAPLRDDDGQLIGT--CSVIQDITELKQA 911

Query: 194  RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253
                K  D++                              L++  + +S  +   H  ++
Sbjct: 912  EHHLKEADRRKDEFLATLAHELRNPLAPISH--------GLQILKRTASGDDSVRHSHEM 963

Query: 254  LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH----- 308
            L+ +   ++   +  L            +         LQ     S   +   +H     
Sbjct: 964  LERQVNHMIRMVDDLLEVSRITTGKVQLRKELVDLNDVLQGVVAASGAVMEAGSHQLRLE 1023

Query: 309  -PSLSAYFDEGENLTPETVDKC--PIPFFVYSHGNLFYA 344
             P+             + V         + +S G++  A
Sbjct: 1024 LPAAPVSLLADPMRLAQMVSNLLNNAAKYSHSGGHIVLA 1062


>gi|17549399|ref|NP_522739.1| composite two-component sensor histidine kinase and response
           regulator hybrid transcription regulator protein
           [Ralstonia solanacearum GMI1000]
 gi|17431652|emb|CAD18329.1| probable composite two-component transcriptional regulatory (sensor
           histidine kinase and response regulator hybrid)
           transcription regulator protein [Ralstonia solanacearum
           GMI1000]
          Length = 676

 Score =  311 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 96/375 (25%), Positives = 173/375 (46%), Gaps = 20/375 (5%)

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILST-NRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
            +   +L + L+A+   +  ++         N     +FG    ++L +       +   
Sbjct: 156 RVSQQRLLAALQASPISLYDVDNTMHFTWVHNP----VFGLQPHELLGRTVREVFGRRAA 211

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEW 564
           S +      +++  L   +E        +  +  + ++  +         +  + DI+E 
Sbjct: 212 SRLTDAGQRVIATGLPTRVEFAFRRRHTQRVVYDVVVMPLRDDTGEIIGLTNAVIDITEH 271

Query: 565 KQEK-------NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
           +Q +          S A++ AE+ S  K DFLA VSHE+RTPL A++G+++++  +   P
Sbjct: 272 RQAEARRALLLEAESRAREEAERASRLKDDFLATVSHELRTPLNAVLGWAQLLAMR---P 328

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
                +      I+RS    + +++DLLD+S I SGK+ L   PV L + +  A   ++ 
Sbjct: 329 YDEAMFRRGLEAIERSARTQVHLIDDLLDMSAILSGKVPLEIGPVDLADVLERARETIEP 388

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737
            A +K+I + T +   +P +  D   +KQ+  N+L+NA+ FTP GG + I+    ++  V
Sbjct: 389 MARQKQITVDTEYLP-VPLLQGDAGRLKQVFWNLLANAVKFTPEGGHVRITVQAGADGLV 447

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY-IFS 796
              VRDTG+G+    L      F Q   S   R  G GLGL +AK +V+ + G      S
Sbjct: 448 A-TVRDTGIGIEPTFLPHVFDRFQQADLSSTRRHGGLGLGLAIAKQLVELHHGHITAASS 506

Query: 797 TPAKGTLIEIIFPLY 811
               GT + +  PL+
Sbjct: 507 GADLGTTMAVTLPLH 521



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/244 (10%), Positives = 61/244 (25%), Gaps = 15/244 (6%)

Query: 105 TIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDL 163
             G    +++G  + +V          +    ++        +            V  D+
Sbjct: 189 VFGLQPHELLGRTVREVFGRRAASRLTDAGQRVIATGLPTRVEFAFRRR--HTQRVVYDV 246

Query: 164 AALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYD 223
             +P+     E  G     I           A    L +  S   E  +  S ++ +   
Sbjct: 247 VVMPLRDDTGEIIGLTNAVI--DITEHRQAEARRALLLEAESRAREEAERASRLKDDFLA 304

Query: 224 IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY 283
             S +   P        + L     + + + +     +  S  + +   +D   ++    
Sbjct: 305 TVSHELRTPLN-AVLGWAQLLAMRPYDEAMFRRGLEAIERSARTQVHLIDDLLDMSAILS 363

Query: 284 TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNL-- 341
            K        + +               +      +       +  P+P      G L  
Sbjct: 364 GKVPLEIGPVDLADVL-------ERARETIEPMARQKQITVDTEYLPVPLLQGDAGRLKQ 416

Query: 342 FYAN 345
            + N
Sbjct: 417 VFWN 420


>gi|116619022|ref|YP_819393.1| PAS/PAC sensor signal transduction histidine kinase [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
 gi|116097869|gb|ABJ63020.1| PAS/PAC sensor signal transduction histidine kinase [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
          Length = 623

 Score =  311 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 89/461 (19%), Positives = 173/461 (37%), Gaps = 37/461 (8%)

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
            L     L    A   + L+ +                  E   +M    +         
Sbjct: 185 RLFIIAGLIALVASVALALFLARTLTRPIEQISEQTTKIAEGDYSMVNHIYGSDELSQLA 244

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
           +  N +     ++      +  E  +L S+L   +DG+   NR G +   N+A +   G 
Sbjct: 245 LSVNDLSTRIEESTET---VNAERNRLDSVLTHMADGVLAANRRGEVTIINQAAADFVGV 301

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR-QTLEKITLGSTKEEKLLSLRIIIK 546
             ED L +     L       +   L  +    +      K  L        + + +I +
Sbjct: 302 NREDALGQNVVSLLRLEGKRTLRDILENLNDFRVDLSDDSKELLVQ------IYVSLIKR 355

Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
           +  F S   + +HDI+E ++  ++                 F++ VSHE+RTPLT++  +
Sbjct: 356 QSGFISGLVVVLHDITEQQRIDSERRM--------------FVSNVSHELRTPLTSVRSY 401

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
            + +               +   +      ++ ++NDLL++S+++ G M +  E ++L+ 
Sbjct: 402 VDALAEGAID--DPEMAQNFLGVVQDETQRMIRMINDLLELSRLDQGTMEVKLEVINLNS 459

Query: 667 AVSEAISLVQLYANE---------KRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
             +  ++   +             K   I   F      +  D     Q+  NI++NA+ 
Sbjct: 460 LFNFVLNRFDMILESDAKNENTITKNYNILREFTKEDVWVEVDPDKFTQVLDNIMNNAVK 519

Query: 718 FTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
           ++P GG I       +    IL + D G+G+   +L+     F ++  S+     GTGLG
Sbjct: 520 YSPDGGTITARL-IKTKTRAILSISDQGLGIPRKDLDNIFNRFFRVDKSRSRAQGGTGLG 578

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
           L ++K +V+   G+ ++ S   KG+   I    Y    P D
Sbjct: 579 LAISKEVVEKFNGRIWVDSVENKGSTFYISL-AYVDEEPED 618


>gi|171058133|ref|YP_001790482.1| PAS/PAC sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
 gi|170775578|gb|ACB33717.1| PAS/PAC sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
          Length = 945

 Score =  311 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 105/586 (17%), Positives = 202/586 (34%), Gaps = 33/586 (5%)

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS--KESFEYLSH 305
           A +   L   +     +     PE E    ++  +  ++               F   + 
Sbjct: 206 ADEAQPLFHAQVAQAVAAMPGKPEIETAAALSYEEMLQRVSALPPDTLVLLGIYFNDRTG 265

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365
           R            +      V    +  +    G            T     D +  A  
Sbjct: 266 RRLLPAEVATAVAKRANAPVVGLYDLHIWKGLTGGSVVVPEEVGRRTGEIGFDILSGARR 325

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ-F 424
           L        +     +    L R         A    +   R             +    
Sbjct: 326 LDASAAEAGMPAQPMVDWAQLERWGGDPAKLPAGTVFLNRPRTLWDEYRNAAIAGSAAIL 385

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
                   +  ++   +  + K+    ++L + L+A  D +  I+R+G I     + +  
Sbjct: 386 VLTALVAALAVQNARRKRAEHKLRDTTIRLEATLDALPDLMFRIDRDGRIEEFRSSATDQ 445

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
                   + K F   + +    V++  L +       +      +    E++   + + 
Sbjct: 446 LYASPSAFMGKTFREVVPEPAARVLDEALEDAARSGSSRGATY-AIDIGAEQRWFEVSMS 504

Query: 545 IKKLPFSSC--YSLTMHDISEWKQEKNKLSHAK------------------KIAEKESSH 584
                      + L + DI+E K+ +  L   +                  + AE  +  
Sbjct: 505 AMAGADDRPAHFILLLRDITERKRAEQTLDDYRQGLEAMVGERTAQLNEATRRAEAANVA 564

Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
           KS FLA +SHEIRTPL AI+G S +I+     P    R     + +  +   +L+I+N +
Sbjct: 565 KSAFLANMSHEIRTPLNAIVGMSHLIRLAGLPPAQTER----LDKLKAAATHLLEILNAI 620

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704
           LD+SKI++GK  L   P+ ++  ++  +S++   A  K + + +        ++ D   +
Sbjct: 621 LDLSKIDAGKFTLEEIPLRVESIIANTLSMLDDRARAKSLRLTSEVDRMPRSLVGDPTRL 680

Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPF 760
           +Q  LN  +NAI FT +G  + +             V   V DTG+G+ +  +      F
Sbjct: 681 QQALLNYANNAIKFTDAGS-VTVRARLVEQHAEDVLVRFEVEDTGIGIDDAAIGNLFSAF 739

Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
            Q  ++   R  GTGLGL + K + +   G   + STP  G++   
Sbjct: 740 QQADSATTRRSGGTGLGLAITKKLAELMKGNAGVTSTPGAGSVFWF 785



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/281 (9%), Positives = 72/281 (25%), Gaps = 27/281 (9%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144
             + ID  G ++E        +       +G    +V         +   +   R  +  
Sbjct: 425 LMFRIDRDGRIEEFRSSATDQLYASPSAFMGKTFREVVPEPAARVLDEALEDAARSGSSR 484

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
           G T    I     +  + ++A+                ++                 +  
Sbjct: 485 GATYAIDIGAEQRWFEVSMSAMAGADD----RPAHFILLLRDITERKRAEQTLDDYRQGL 540

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV----------------SSLTEYYA 248
             +   +    +    + +  +         M +++                + L     
Sbjct: 541 EAMVGERTAQLNEATRRAEAANVAKSAFLANMSHEIRTPLNAIVGMSHLIRLAGLPPAQT 600

Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
            + D LK     LL      L    D   I+  ++T ++    +++    +   L  R  
Sbjct: 601 ERLDKLKAAATHLL----EILNAILDLSKIDAGKFTLEEIPLRVESIIANTLSMLDDRAR 656

Query: 309 PSLSAYFDEGENLTPETVD---KCPIPFFVYSHGNLFYANP 346
                   E + +    V    +       Y++  + + + 
Sbjct: 657 AKSLRLTSEVDRMPRSLVGDPTRLQQALLNYANNAIKFTDA 697


>gi|116511253|ref|YP_808469.1| Signal transduction histidine kinase [Lactococcus lactis subsp.
           cremoris SK11]
 gi|116106907|gb|ABJ72047.1| PAS/PAC sensor signal transduction histidine kinase [Lactococcus
           lactis subsp. cremoris SK11]
          Length = 475

 Score =  311 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 80/384 (20%), Positives = 154/384 (40%), Gaps = 38/384 (9%)

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
           D    +  +E +  QL SIL    DG+   +R G I+  N++         E ++ K   
Sbjct: 100 DIVRTQNNLENQRNQLDSILAYMVDGVIATDRRGNIIMANKSALHYLNTSNELLMEKNIV 159

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS--- 555
             L+          L +          E          K +SL I        S +    
Sbjct: 160 DVLKIADQYNFYDLLEKEP--------EITIETHDAGNKSISLHIKFALFRRESGFISGI 211

Query: 556 -LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
              +HD++E  + + +              +  F++ VSHE+RTPLT++  + E +++  
Sbjct: 212 IAVLHDMTEQDKAERE--------------RRLFVSNVSHELRTPLTSVKAYLEALEDGA 257

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS----- 669
                      +        N ++ +++DLL +S+++  ++ L+ E ++L   +      
Sbjct: 258 ID--DKETASSFIGVSLTETNRMIRMISDLLTLSRMDQDRIVLNKEIINLIAFLDYQINR 315

Query: 670 --EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727
             + +             +   +++    +  D   + Q+  NI+ NAI ++P GG I I
Sbjct: 316 LDQILETESNDLISSNFTLVRKYSDKPIWVEIDTDKIAQVIDNIIGNAIKYSPKGGTITI 375

Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN-SQQIRGEGTGLGLPLAKAMVD 786
           S      + V++ ++D G+G+   +L K    F ++ N S+  +  GTGLGL +   +V 
Sbjct: 376 SIETRERD-VLISIKDEGMGIPKSDLLKIFDRFYRVDNASRNSKVGGTGLGLSIVHDIVK 434

Query: 787 ANMGKFYIFST-PAKGTLIEIIFP 809
            + G  +  S    KGT      P
Sbjct: 435 IHGGTIFASSEGEGKGTTFSFTLP 458


>gi|23099273|ref|NP_692739.1| two-component sensor histidine kinase [Oceanobacillus iheyensis
           HTE831]
 gi|22777502|dbj|BAC13774.1| two-component sensor histidine kinase [Oceanobacillus iheyensis
           HTE831]
          Length = 584

 Score =  311 bits (798), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 84/368 (22%), Positives = 163/368 (44%), Gaps = 25/368 (6%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            +  E  QL SI+ + +DG+  +NREG +L  N    K   Y  E     P     + + 
Sbjct: 240 ALRQEKEQLSSIVSSMADGVFTLNREGEVLVINPPAKK---YMDEWFYENPDESEGQNHL 296

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
           P+ +   L E+++ +     E    G       + L   +            + D++E +
Sbjct: 297 PTEVKEALLEVITKEYAVLKESAVQGR----SYVMLVTPLYDESHVRGCVAVIRDMTEER 352

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           +                  + DF+A VSHE+RTP++ + G+SE I +            E
Sbjct: 353 RL--------------DKLRKDFIANVSHELRTPISMLQGYSEAIVDDV--ASSKEEKNE 396

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
            A  I      +  +VN+LLD++++E+G++ L  + V++   +   +   Q  + E+ + 
Sbjct: 397 LAQIIYEESLRMGRLVNELLDLARMEAGQIQLRLDSVAIQPFIERIVHKFQGISREEMVE 456

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +  +          D   ++Q+  N++ NAI  T + G + +    ++ +++ + V+D+G
Sbjct: 457 LELTVDIEHQIGEMDPDRIEQVLTNLIDNAIRHTSNNGFVKV-LAVSNQDKLYVEVKDSG 515

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGE-GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
            G+   +L    + F +   S+  + + GTGLGL +AK ++DA+ G  Y+ S    GT  
Sbjct: 516 SGIPEEDLPFIFERFYKADKSRVKKEKQGTGLGLAIAKNIIDAHHGSIYVKSKLDAGTTF 575

Query: 805 EIIFPLYD 812
               P+  
Sbjct: 576 SFEIPIKQ 583


>gi|330507655|ref|YP_004384083.1| multi-sensor hybrid histidine kinase [Methanosaeta concilii GP-6]
 gi|328928463|gb|AEB68265.1| multi-sensor hybrid histidine kinase [Methanosaeta concilii GP-6]
          Length = 1202

 Score =  311 bits (798), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 90/446 (20%), Positives = 174/446 (39%), Gaps = 60/446 (13%)

Query: 420  KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII--NREGIILST 477
              N+              +  R  +  +      L +++            +R+  +   
Sbjct: 613  TENEVAILQAAAESIGNALLRRRTEVALRESKRMLTTLMSNLPGMAYRCRNDRQRTMEFV 672

Query: 478  NRAVSKLFGYPVEDILRKP---FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
            +    +L G P  ++L      +   +  +    +   + +         L    + +  
Sbjct: 673  SDGCLELTGRPSPELLHNSAISYADLIHPDDRDRVWSEIQQETEKGTPFRLTY-RINAGS 731

Query: 535  EEKLLS-----LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE-------- 581
            E K +      +     KL     +   +HDI+E K  ++     ++  E          
Sbjct: 732  ETKWVWEHGQGIFDASGKLLALEGF---IHDITERKLAEDVRKRTQEELEMRVSERTAWL 788

Query: 582  -------------------------------SSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
                                           S    +FLA +SHEIRTP+ ++IG + ++
Sbjct: 789  LRINRALNEEMLEHKETEKKLLQAQQAADAASRSMGEFLAYMSHEIRTPMNSVIGLAGLL 848

Query: 611  KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
                  P       +Y   I  SG+ +L I+ND+LD SKI  GKM L  EP SL + +  
Sbjct: 849  LETNLSP----EQRDYVQTIHSSGDALLSIINDILDFSKINEGKMKLELEPFSLRKCIDR 904

Query: 671  AISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
            +I++V   A EK + +     + +P+ ++ D   ++QI +N+L NA+ FT  G  + +  
Sbjct: 905  SINMVAAKAAEKGLEMGFYLDDLVPQTVVGDSVRLQQILVNLLGNAVKFTERG-MVSLEV 963

Query: 730  THTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                    +   V DTG+G++  +++K    F Q+  S   +  GTGLGL +++ +V+  
Sbjct: 964  KMGDEPGMLHFSVTDTGIGISKSDMKKLFHSFSQVDASTSRKYGGTGLGLAISRMLVEQM 1023

Query: 789  MGKFYIFSTPAKGTLIEIIFPLYDTS 814
             G+ ++ S    G+       + ++S
Sbjct: 1024 GGRIWVESEMGSGSTFHFQIKVEESS 1049



 Score = 70.4 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/289 (10%), Positives = 84/289 (29%), Gaps = 20/289 (6%)

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDI 360
           +              + G  L  + +   P   F+   G L Y   SF        +  +
Sbjct: 41  DLDRISARLCEPNSSNLGNTLLDDLISDNPCCLFLQDRG-LRYTWLSFERPPGMDGLLAL 99

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
                   +    +      IK  ++   +                      + ++ +  
Sbjct: 100 GKTD--EDIFSPAEADRQRRIKERVIETGNPARGEVHIS------KDGMEQYLDYVYYPW 151

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
            ++    +   G   +  + RI + +++    ++   +E++   I + + EG I   N  
Sbjct: 152 QDEDGRTLGVAGCIKDVTERRIAQIQLQ----RMVQSVESSPTAIVLFDFEGRIEYVNPL 207

Query: 481 VSKLFGYPVED-ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
           + +  GY     ++      F  ++  S +   +  +L    +   +        + +  
Sbjct: 208 LLQSCGYDDASPVMGWSIFDFTNEDGKSKLREVIIPVLLS--QGNWQGELPIQGTDGQYY 265

Query: 540 SLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
           +  +I  ++   S     +      +S+  + +  L   +         
Sbjct: 266 TAEMICTRIAAYSGGSVYFLANFCHLSDSMRAEEALLLDESGLGALLQL 314



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/276 (8%), Positives = 72/276 (26%), Gaps = 13/276 (4%)

Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS 242
            +  +       ++ +   +      E  +G  S ++      +     P   + +KV  
Sbjct: 513 TILESAEWTGTESVFEESIQWLREPAEPFRGRISWDQFIGWQDALSRGNPIQGITSKVID 572

Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302
                   + ++     P+    E            +  +   +     LQ  ++     
Sbjct: 573 PGRKLLEDNGIISFLLLPVF--IERRFCAVISIDDCHFERRWTENEVAILQAAAESIGNA 630

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN---LFYANPSFLLLTKYKSVDD 359
           L             E + +    +   P   +   +     + + +   L LT   S + 
Sbjct: 631 LL---RRRTEVALRESKRMLTTLMSNLPGMAYRCRNDRQRTMEFVSDGCLELTGRPSPEL 687

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
           +  +      L  P   D      +       T    + R++        +  +      
Sbjct: 688 LHNSAISYADLIHPDDRD-RVWSEIQQETEKGTPFRLTYRINA----GSETKWVWEHGQG 742

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
             +   + +   G   +  + ++ +   +    +L 
Sbjct: 743 IFDASGKLLALEGFIHDITERKLAEDVRKRTQEELE 778



 Score = 43.5 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 23/259 (8%), Positives = 57/259 (22%), Gaps = 8/259 (3%)

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
               L         ++             P           T+           ++    
Sbjct: 61  LLDDLISDNPCCLFLQDRGLRYTWLSFERPPGMDGLLALGKTDEDIFSPAEADRQRRIKE 120

Query: 263 TSEESSLPEQEDFH-TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
              E+  P + + H + +  +      +   Q+    +          +           
Sbjct: 121 RVIETGNPARGEVHISKDGMEQYLDYVYYPWQDEDGRTLGVAGCIKDVTERRIAQIQLQR 180

Query: 322 TPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
             ++V+  P    ++   G + Y NP  L    Y     +                    
Sbjct: 181 MVQSVESSPTAIVLFDFEGRIEYVNPLLLQSCGYDDASPVMGWSIFD--FTNEDGKSKLR 238

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
              + +  S             IQ           I    A     ++          D+
Sbjct: 239 EVIIPVLLSQGNWQGEL----PIQGTDGQYYTAEMICTRIAAYSGGSVYFLANFCHLSDS 294

Query: 441 RINKRKMEIEVMQLCSILE 459
              +  + ++   L ++L+
Sbjct: 295 MRAEEALLLDESGLGALLQ 313



 Score = 42.7 bits (99), Expect = 0.24,   Method: Composition-based stats.
 Identities = 13/130 (10%), Positives = 39/130 (30%), Gaps = 9/130 (6%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMI---GMRLCDVSDILHIDPN-NHIGDLLKRQNTW 143
             D    ++ +S+   +  G  + +++    +   D+      D   + I    ++   +
Sbjct: 662 RNDRQRTMEFVSDGCLELTGRPSPELLHNSAISYADLIHPDDRDRVWSEIQQETEKGTPF 721

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                 + I   +    +      I+  + +     GF  +H          + KR  ++
Sbjct: 722 R---LTYRINAGSETKWVWEHGQGIFDASGKLLALEGF--IHDITERKLAEDVRKRTQEE 776

Query: 204 FSHLHEIKKG 213
                  +  
Sbjct: 777 LEMRVSERTA 786



 Score = 40.4 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 33/275 (12%), Positives = 69/275 (25%), Gaps = 20/275 (7%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD-LLKRQNTWYGKTT 148
           D       +S    +  G      +G    D+      D    I + +++  N   G+  
Sbjct: 77  DRGLRYTWLS--FERPPGMDGLLALGKTDEDIFSPAEADRQRRIKERVIETGNPARGE-V 133

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH-- 206
               +G   Y+       P    +    G  G   +         +   +R+ +      
Sbjct: 134 HISKDGMEQYLDYV--YYPWQDEDGRTLGVAGC--IKDVTERRIAQIQLQRMVQSVESSP 189

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
              +        +    +  Q             S            L+    P+L S+ 
Sbjct: 190 TAIVLFDFEGRIEYVNPLLLQSCGYDDASPVMGWSIFDFTNEDGKSKLREVIIPVLLSQG 249

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS----HRNHPSLSAYFDEGENLT 322
           +    +      +   YT +     +   S  S  +L+      +           E+  
Sbjct: 250 N-WQGELPIQGTDGQYYTAEMICTRIAAYSGGSVYFLANFCHLSDSMRAEEALLLDESGL 308

Query: 323 PETVDKCPI--PFFVYSHGNLFYANPSFLLLTKYK 355
              +   P+   F         YA  +   LT  +
Sbjct: 309 GALLQLNPMDEAFLKELAD---YAIQAGAKLTGSR 340


>gi|254415503|ref|ZP_05029263.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196177684|gb|EDX72688.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 510

 Score =  311 bits (798), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 75/385 (19%), Positives = 160/385 (41%), Gaps = 21/385 (5%)

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
           ++ E       ++ ++    +  S+LE     +  ++ +G +   N     L GY   ++
Sbjct: 142 LQQEIRVRHQTQQILQETERRWRSLLENVQLLVVGLDWQGDVEYMNPFGLGLTGYTSAEV 201

Query: 493 LRKPFTVFLEQNT-PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL--P 549
             K +      ++    +     E+L  +     +   L  + EE+L++    + +    
Sbjct: 202 FGKNWFNTFIPSSEQPQLKQTFHELLYHNSHAYYQNSILTKSGEERLIAWNNTVLRDITG 261

Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
             +       DI++ +  +                K++F++ VSHE+RTPLT++ G   +
Sbjct: 262 AIAGIMSIGEDITQRQAVE--------------RMKNEFISLVSHELRTPLTSMRGSLGL 307

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           +K   +    + +     +      + +  +VND+L + +++SG++ L  E   + + + 
Sbjct: 308 LKMGVYDNQPD-KAKRMLDIAVTDCDRLGRLVNDILSLERLDSGQVTLVKEVCDVADLIK 366

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
            ++  +   A      I         ++     ++ Q   N+LSNAI F+ S   I +  
Sbjct: 367 HSVEAIDAIAEA--AGIAIQVTPLSAQVYVAPDTIIQTLTNLLSNAIKFSESNTTITVGV 424

Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
            H S+  ++  V D G G+    LE+    F Q+  S   +  GTGLGL + ++++  + 
Sbjct: 425 QHQSD-CILFHVTDQGRGIPTEHLERIFGRFQQVDVSDSRQKGGTGLGLAICRSIIQQHG 483

Query: 790 GKFYIFSTPAKGTLIEIIFPLYDTS 814
           G  +  ST   G+      P+Y  S
Sbjct: 484 GGIWAESTLGSGSTFYFTLPVYKES 508


>gi|149375905|ref|ZP_01893672.1| PAS [Marinobacter algicola DG893]
 gi|149359785|gb|EDM48242.1| PAS [Marinobacter algicola DG893]
          Length = 1197

 Score =  311 bits (798), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 108/672 (16%), Positives = 226/672 (33%), Gaps = 50/672 (7%)

Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212
           +G NL +    +   + +      G  G G++           LG  + +K       + 
Sbjct: 79  DGVNLQMWKRFSE--VLALQERLPGINGIGVI----ERVAAENLGDYIAQKQQERSHFRI 132

Query: 213 GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ 272
             S    + + I   +    +        +                   +T     + ++
Sbjct: 133 HPSHSGDDFWPIVYIEPEASNRAAVGLDMAHESNRYQAALKAMRTGETQITGPIVLVQDE 192

Query: 273 EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP 332
           E        +   +       +  +  F  L +               L   T+      
Sbjct: 193 EKTPGFLFYRPFYQSAEVPPTDQRESLFSGLVYAPFI--------MSKLMEGTLANIN-- 242

Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
                   L +   +      Y  +D+           D   + + + +  +   R    
Sbjct: 243 -------RLVHFRVTDGESRLYSELDETRGDN-----YDPTPMFEASYVLDMYGRRW--- 287

Query: 393 CIAASARLHTIQW-NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR--KMEI 449
                  L    +   +  + +                         ++++ ++  ++  
Sbjct: 288 HFDVQTTLRFETFNAGKQPIIILVSGLVINALIFLVFTLMADARRRAESKVVEKTSELRE 347

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
            +  + ++ +     +++ + +      N      F +  E  + +     L  +     
Sbjct: 348 SLDFINTLTDNLPLTVSVWDSQLNCRFMNAYGEHWFPFSKEAAIGQNLEQLLGPDLVKER 407

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK- 568
           N +  + L     Q           E + + +      L    C+  T  D++E  Q + 
Sbjct: 408 NIHYQQALEGRSVQA-SASLENRNGEIRDVVVSYHPVTLQGEQCFMATTIDVTEIVQREK 466

Query: 569 ------NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
                  +L   K+ AE   + K+ FLA +SHEIRTP+ AIIG   +++           
Sbjct: 467 ELEVLNAELKEQKQEAESAVTVKTAFLANMSHEIRTPMNAIIGVLVLLQEAGL----EDH 522

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                     +   +L ++ND+LD+SKIE+  + L   P  +D  V  ++ L  + A EK
Sbjct: 523 PRRLVKKAFSASEALLQLLNDILDLSKIEADHIELDIHPFDIDALVHRSVDLFAIVAEEK 582

Query: 683 RILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVI 738
            + +R S     P R+  DL  + QI  N++ NA+ FT  GG   +I       ++  + 
Sbjct: 583 GLKLRVSIDPTTPNRVAGDLLRISQICTNLVGNAVKFTRKGGIDVRIDYRAESQASGYLR 642

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           + V DTGVG+   +  +  + F Q   S      GTGLGL +++ + D    +  + S  
Sbjct: 643 IEVADTGVGIKPEDQGRVFENFRQADESTSRNFGGTGLGLAISRRLADLMEAELTLKSDV 702

Query: 799 AKGTLIEIIFPL 810
            +G+  +++ P+
Sbjct: 703 GEGSTFQLLVPV 714


>gi|319893720|ref|YP_004150595.1| Two-component sensor kinase SA14-24 [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317163416|gb|ADV06959.1| Two-component sensor kinase SA14-24 [Staphylococcus
           pseudintermedius HKU10-03]
          Length = 610

 Score =  311 bits (797), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 76/388 (19%), Positives = 171/388 (44%), Gaps = 29/388 (7%)

Query: 426 ENMPQNGIEPEDVDTRINKRKM--EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           + + +  +   ++  R+ + +   E E  +L S++   SDG+   +R G +   N    K
Sbjct: 236 DEIGELALAFNNLSKRVQEAQANTESEKRRLDSVITHMSDGVIATDRRGRVRIINDMALK 295

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           + G   E++        L+      +        S+ +    E+  +        ++   
Sbjct: 296 MLGKSKEEVSGHFIFDVLDLQDEFSLEELNENNDSVLIDINEEEGIIAR------VNFST 349

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
           I++   F + Y   +HD++E +Q + +              + +F+A VSHE+RTPLT++
Sbjct: 350 IVQDTGFVTGYIAVLHDVTEQQQIERE--------------RREFVANVSHELRTPLTSM 395

Query: 604 IGFSEVIKNQRFGPLGNPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
             + E ++    G   +     ++ +        ++ +VNDLL +SK+++    +  E V
Sbjct: 396 NSYIEALEE---GAWRDESIAPQFLSVTREETERMIRLVNDLLHLSKMDNETETITKEIV 452

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
             +  +++ I+  +     K                 D   + Q+  N+++NA+ ++   
Sbjct: 453 DFNMFINKIIN--RHEMAAKDTTFVRDIPRETIFTEVDPDKMTQVFDNVITNAMKYSRGE 510

Query: 723 GQIIISTTHTS-NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
            ++     H   +  + +R++D G+G+   +++K    F ++  ++  +  GTGLGL ++
Sbjct: 511 KRVEFHVKHNPVHSRLTIRIKDNGIGIPINKVDKIFDRFFRVDKARTRKMGGTGLGLAIS 570

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           K +V+A+ G+ +  S   +GT I I  P
Sbjct: 571 KEIVEAHNGRIWANSVEGQGTSIFITLP 598


>gi|183597937|ref|ZP_02959430.1| hypothetical protein PROSTU_01283 [Providencia stuartii ATCC 25827]
 gi|188022706|gb|EDU60746.1| hypothetical protein PROSTU_01283 [Providencia stuartii ATCC 25827]
          Length = 781

 Score =  311 bits (797), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 95/492 (19%), Positives = 193/492 (39%), Gaps = 24/492 (4%)

Query: 329 CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388
             +   +   G +       L L        I     +  L    +  + +  +   +  
Sbjct: 38  MQMAVTIVLRGQVDS-----LDLVGSIFFGLIITPLAVYFLSVVVEQLEESRQRLSRMVD 92

Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
                    A L+T Q           I   +  +         ++ E       + ++E
Sbjct: 93  KLEVMRKRDAELNT-QLQGNIEQLNQEIIEREKAESAHLELLEQLKQEMKHREQTQIELE 151

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
            +   L S L+A+ D +   N        NRA+  L G   + ++        +    S 
Sbjct: 152 QQSTLLRSFLDASPDLVYYRNENNEFSGCNRAMELLTGKSEKHLVGLTPLDIYDVEIASK 211

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII--KKLPFSSCYSLTMHDISEWKQ 566
           +     ++   ++  T E+  +     +    LR +    ++           DI+E K+
Sbjct: 212 VMETDEKVFRHNVSLTYEQWLVYPDGRKACFELRKVPFYDRVGKRHGLMGFGRDITERKR 271

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
            +  L +        S  K+ F++ +SHE+RTPL  I+G S ++ +           + Y
Sbjct: 272 YQEALEN-------ASRDKTTFISTISHELRTPLNGIVGLSRILLDTDLTA----EQMNY 320

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
              I  S   + +I ND++++ KIE  K+ L  +PV+L + V++  +L  L    K +  
Sbjct: 321 LKTIHVSAVTLGNIFNDVIEMDKIERRKVQLDNQPVALPQFVNDLENLSGLLVQPKGLKF 380

Query: 687 RTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
               A  +P  +L D   ++QI  N++ NA+ FT  G ++ +S      +++  RV+D+G
Sbjct: 381 VMDVAAGLPEKVLTDGTRLRQILWNLIGNAVKFTQQG-EVKLSIWREGEDKLFFRVQDSG 439

Query: 746 VGMTNYELEKAMKPFGQ-IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           +G+   EL+K    + Q   ++      GTG+GL +++ +     G   + S   +G++ 
Sbjct: 440 IGIPKDELDKIFAMYYQVTDSAGGKPATGTGIGLSVSRRLAQNMGGDIQVESEIGQGSIF 499

Query: 805 EIIF--PLYDTS 814
            +    P+ +  
Sbjct: 500 TLSIVAPVIEEE 511



 Score = 41.6 bits (96), Expect = 0.60,   Method: Composition-based stats.
 Identities = 29/205 (14%), Positives = 69/205 (33%), Gaps = 13/205 (6%)

Query: 14  LTSNCKGNTQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENT 73
           L +  +GN + L+++ I      E+ K E+   +  EQ     +++E       L+ ++T
Sbjct: 104 LNTQLQGNIEQLNQEII------EREKAESAHLELLEQLKQEMKHREQTQ--IELEQQST 155

Query: 74  FVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI 133
            +   +  +    +  + +      +  +    G     ++G+   D+ D+         
Sbjct: 156 LLRSFLDASPDLVYYRNENNEFSGCNRAMELLTGKSEKHLVGLTPLDIYDVEIASKVMET 215

Query: 134 GDLLKRQN-TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192
            + + R N +   +  L   +G       +L  +P Y R  +  G  GFG          
Sbjct: 216 DEKVFRHNVSLTYEQWLVYPDGRKACF--ELRKVPFYDRVGKRHGLMGFG--RDITERKR 271

Query: 193 PRALGKRLDKKFSHLHEIKKGHSSV 217
            +   +   +  +            
Sbjct: 272 YQEALENASRDKTTFISTISHELRT 296


>gi|162451780|ref|YP_001614147.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
 gi|161162362|emb|CAN93667.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
          Length = 1171

 Score =  311 bits (797), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 117/694 (16%), Positives = 222/694 (31%), Gaps = 50/694 (7%)

Query: 121 VSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRG 180
           VS+         IG  L+    W G   L  +  T   +P D     I+ R     G  G
Sbjct: 349 VSNAFKFTLEGEIGIALR----WAGDHVLLEVRDTGTGIPAD-ELPRIFDRFHRIQGAHG 403

Query: 181 FGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM-KNK 239
                 +       AL + L +                     I +  +  P  R+   +
Sbjct: 404 ----RSHEGSGIGLALVRELVRFHMGEVHATSEVGRGSTFTVRIPAGSAHVPAERIGAER 459

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
              +T           ++                       +    +   G +       
Sbjct: 460 ELGMTAVTVQAFVEEASQWVGGAAPPAELPLGSPASAGSAGDARPAEGPAGHVL------ 513

Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDD 359
              +                  T E V+   +                         V D
Sbjct: 514 --LVEDNPDMRSYLRDVLATRWTVEAVENGEMALCAVR-----------------SRVPD 554

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
           + +   +   LD   L      +P           A S     +      +      PF 
Sbjct: 555 LVLTDIMMPGLDGFGLLKALRAEPRTRLVPVVFISARSGEASRVHGAEAGADDYLVKPFS 614

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
                     +  I         +  ++     +  S+ +     I +    G     N 
Sbjct: 615 VRELLARVGGRIEIARLRRQLAEDVERLRESEQRFRSLADCAPMMIWMSGPSGGCEYVNT 674

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
              +  G  +++ L   +   +  +   ++     E +       LE   L    E + +
Sbjct: 675 TWLRFTGRSLDEELGDGWLDAVHPDDRPLVASVCAESIETHEPFMLECQMLRRDGESRWV 734

Query: 540 SLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
             +   +     +   +  +  DI+E K+ ++ L+            K +FLA + HE+R
Sbjct: 735 VTQGAPRFGAAGAFLGFVGSSLDITERKRVEDALAD-------ADRRKDEFLAMLGHELR 787

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
            P+  I    E+++ +  G   +    ++   I R    ++ +V+DLLD+S+I  GK+ L
Sbjct: 788 NPMAPICVAVELLRRRSHGGPPD----QHIEVIARQTRTLMRLVDDLLDVSRITRGKIEL 843

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
             E + +  AV+ A+   +     +R  IR        ++L D   ++QI +N+L+NA  
Sbjct: 844 RKERIDVKAAVARAVESTREQIEARRHQIRLVLPAAAVQVLGDDVRLEQILVNLLTNACK 903

Query: 718 FTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
           +T  GG I ++       +V LRVRD G+G++   L    + F Q   S      G G+G
Sbjct: 904 YTDPGGHIGVTVEQR-GGQVELRVRDDGIGISREVLPHVFELFHQADRSLDRAPGGLGIG 962

Query: 778 LPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFPL 810
           L + + +V  + G     S  P +G+   +  P+
Sbjct: 963 LTIVRDLVALHGGSIEATSPGPGQGSEFIVRLPV 996



 Score =  269 bits (689), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 85/454 (18%), Positives = 162/454 (35%), Gaps = 65/454 (14%)

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
               MP + I       R    +         +I E       +I  +  +++ + A  +
Sbjct: 10  EDLPMPTSAITSTTSHQRSESEQALPASADFRAIFEGIPGNYVVIRPDFTVVAASDAFLR 69

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
                 E+ L +        N           + +      +E++      +   +    
Sbjct: 70  AANIRREEFLGRHIFDVFPDNPDDPHATGTRNLRAS-----IERVIQMRAPDSMAVQKYD 124

Query: 544 IIKKLPFSSCY----------------------SLTMHDISE------------------ 563
           I +       +                         + D++E                  
Sbjct: 125 IPRPEAEGGGFEERYWSPLNSPLLGPDGRVAYIIHRVEDVTEFVQLKQRGIEQCRRTEEL 184

Query: 564 -----------------WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
                             ++   +L  A +   +    K+ F + VSHE+RTPLT ++  
Sbjct: 185 KTRAERVEAEVFLRAQEIQRANEQLRVANEQLSRLDELKTRFFSNVSHELRTPLTLMLCP 244

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
            + +     G L + R  E      R+   +L +VN LLD ++IE+ +M + +E + L  
Sbjct: 245 IDELLTSAPGGLTD-RQRELVELARRNARRLLKLVNTLLDFARIEAARMQVSYEALDLSA 303

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726
             +E +S  +       + +         R+  D    ++I LN++SNA  FT  G +I 
Sbjct: 304 LTAEVVSAFRAAVERAGLRLVVDCPPLPERVYVDREMWEKIVLNLVSNAFKFTLEG-EIG 362

Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
           I+    + + V+L VRDTG G+   EL +    F +I  +     EG+G+GL L + +V 
Sbjct: 363 IALRW-AGDHVLLEVRDTGTGIPADELPRIFDRFHRIQGAHGRSHEGSGIGLALVRELVR 421

Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820
            +MG+ +  S   +G+   +  P      P + I
Sbjct: 422 FHMGEVHATSEVGRGSTFTVRIPAGSAHVPAERI 455



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/278 (8%), Positives = 60/278 (21%), Gaps = 8/278 (2%)

Query: 69  DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID 128
           +SE  F        +   W     G  + ++    +  G    + +G    D        
Sbjct: 644 ESEQRFRSLADCAPM-MIWMSGPSGGCEYVNTTWLRFTGRSLDEELGDGWLDAVHPDDRP 702

Query: 129 PNNHI-GDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187
               +  + ++    +  +  +   +G +    +     P +     F GF G  +    
Sbjct: 703 LVASVCAESIETHEPFMLECQMLRRDGESR--WVVTQGAPRFGAAGAFLGFVGSSL--DI 758

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247
                        D++      +             I                    E  
Sbjct: 759 TERKRVEDALADADRRKDEFLAMLGHELR--NPMAPICVAVELLRRRSHGGPPDQHIEVI 816

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
           A +   L      LL     +  + E        +    +   + +   +     +    
Sbjct: 817 ARQTRTLMRLVDDLLDVSRITRGKIELRKERIDVKAAVARAVESTREQIEARRHQIRLVL 876

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYAN 345
             +      +   L    V+           G      
Sbjct: 877 PAAAVQVLGDDVRLEQILVNLLTNACKYTDPGGHIGVT 914


>gi|158337655|ref|YP_001518830.1| two-component sensor histidine kinase [Acaryochloris marina
           MBIC11017]
 gi|158307896|gb|ABW29513.1| two-component sensor histidine kinase [Acaryochloris marina
           MBIC11017]
          Length = 801

 Score =  311 bits (797), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 105/573 (18%), Positives = 197/573 (34%), Gaps = 46/573 (8%)

Query: 276 HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK-CPIPFF 334
             + +     +Q    +  +       +         A   + E       ++       
Sbjct: 233 REVEIGNQVFEQSVHFIAESDLIRSYIVDITERKLTEAALQDSERRFRAIFNQTFQFSGL 292

Query: 335 VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL-------------DAPKLSDNNAI 381
           +   G L  AN + L     +  D I+    L+                           
Sbjct: 293 LKPDGTLLEANQTALDFGGLQLEDVIDRPVWLARWWTTSTDTQKRLKAAVLEAARGQFIR 352

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF--IPFEKANQFPENMPQN-------- 431
             V +  +          L  ++ +  + + + F         Q    + Q         
Sbjct: 353 YEVAVLGARDVVATIDFSLKPVRDDNGDVVLLIFEGRDISDRKQVEAALQQAHSELEVRV 412

Query: 432 ------------GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
                        +  E V+ +  +  ++  V    +++ A  D +   + +GI ++   
Sbjct: 413 QQRTAELKQSNEQLRSEIVERQRAEAALQSSVATNRALINAMPDWMFRFSADGIFVNYKD 472

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
           A +     P E+ L KP      Q+T + + + +   L     Q  E        +   L
Sbjct: 473 APNTTLPLPTEEFLGKPLDQVFPQDTATSLMNCIKNALGSHEMQLFEYEL---DHDGNPL 529

Query: 540 SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                I  +   +     + DI+E K+ ++ +  A     + +  KS F+A  SHE RTP
Sbjct: 530 MFEARIA-VSAENEVMAVIRDITERKRYEDDIRTALNKERELNELKSRFVAMTSHEFRTP 588

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  I+  +E +         + R +++ N I +S   +  ++ND+L + K ESG +    
Sbjct: 589 LATILSSAE-LLEHYGHKWDDTRKLKHLNQIQQSVEHMTGLLNDVLLLGKAESGNLAFKP 647

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719
            P+ L E        +Q     K   I     +       D + ++ I  N+LSNAI ++
Sbjct: 648 IPMQLTEFCKGLAEELQ--ITTKTHEIVCRLQDQPAETRMDEKLLRHIFTNLLSNAIKYS 705

Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
           P GG +        N   I  V+D G+G+   E ++    F +   S      GTGLGL 
Sbjct: 706 PQGGTVDFDLVFEDN-YAIFNVQDHGLGIPQSECDRVFNSFNRA--SNVGNISGTGLGLA 762

Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
           + K  VD + G+  + S    GT   +  P+  
Sbjct: 763 IVKRSVDLHGGEISLTSQEKVGTTFTVQLPINQ 795



 Score = 78.1 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 30/262 (11%), Positives = 78/262 (29%), Gaps = 31/262 (11%)

Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
             V   G + Y NP+          +  +       +      +D   ++ V +      
Sbjct: 184 IEVNLTGRITYLNPAAQAQFPKLRDEQSKHPILTGLVALICNDNDKFFVREVEI------ 237

Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
                                +     +++             +  + ++ +  ++    
Sbjct: 238 --------------GNQVFEQSVHFIAESD------LIRSYIVDITERKLTEAALQDSER 277

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
           +  +I   T     ++  +G +L  N+      G  +ED++ +P  +     T +     
Sbjct: 278 RFRAIFNQTFQFSGLLKPDGTLLEANQTALDFGGLQLEDVIDRPVWLARWWTTSTDTQKR 337

Query: 513 L-TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM----HDISEWKQE 567
           L   +L     Q +          + + ++   +K +   +   + +     DIS+ KQ 
Sbjct: 338 LKAAVLEAARGQFIRYEVAVLGARDVVATIDFSLKPVRDDNGDVVLLIFEGRDISDRKQV 397

Query: 568 KNKLSHAKKIAEKESSHKSDFL 589
           +  L  A    E     ++  L
Sbjct: 398 EAALQQAHSELEVRVQQRTAEL 419



 Score = 42.3 bits (98), Expect = 0.35,   Method: Composition-based stats.
 Identities = 21/143 (14%), Positives = 45/143 (31%), Gaps = 17/143 (11%)

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
           E  +++L S  E  S+ I  +N  G I   N A    F    ++  + P    L     +
Sbjct: 166 EAAIVRLASFPELFSNPIIEVNLTGRITYLNPAAQAQFPKLRDEQSKHPILTGLVALICN 225

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQE 567
             + +    + +  +   +                  +  +  S      + DI+E K  
Sbjct: 226 DNDKFFVREVEIGNQVFEQ-----------------SVHFIAESDLIRSYIVDITERKLT 268

Query: 568 KNKLSHAKKIAEKESSHKSDFLA 590
           +  L  +++      +    F  
Sbjct: 269 EAALQDSERRFRAIFNQTFQFSG 291



 Score = 41.6 bits (96), Expect = 0.65,   Method: Composition-based stats.
 Identities = 17/166 (10%), Positives = 41/166 (24%), Gaps = 11/166 (6%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMR--LCDVSDILHIDPNNHIGDLLK-RQNTWYGKT 147
             G L E ++      G     +I     L                 +L+  +  +    
Sbjct: 295 PDGTLLEANQTALDFGGLQLEDVIDRPVWLARWWTTSTDTQKRLKAAVLEAARGQFIRYE 354

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL-----DK 202
               +   ++   ID +  P+   N +       G            A  ++       +
Sbjct: 355 VAV-LGARDVVATIDFSLKPVRDDNGDVVLLIFEG--RDISDRKQVEAALQQAHSELEVR 411

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA 248
                 E+K+ +  +  E  +    ++        N+         
Sbjct: 412 VQQRTAELKQSNEQLRSEIVERQRAEAALQSSVATNRALINAMPDW 457


>gi|296121745|ref|YP_003629523.1| PAS sensor protein [Planctomyces limnophilus DSM 3776]
 gi|296014085|gb|ADG67324.1| PAS sensor protein [Planctomyces limnophilus DSM 3776]
          Length = 584

 Score =  311 bits (797), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 92/568 (16%), Positives = 208/568 (36%), Gaps = 44/568 (7%)

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
           L          Q +   I+  Q    Q       +  +    ++  +         +   
Sbjct: 29  LTAGYRDLAYPQVEARQIDNAQILLPQLRKIPAADRWDFLRTINATSETRFEVLTLDQAR 88

Query: 321 LTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
              +   +       +  G     N + L        +       L        +++N +
Sbjct: 89  QKADAEPELADA-LAHRIGASRRPNANALFQFYAIEFEAHGETLILRMTTPLDSVTENLS 147

Query: 381 IKPVMLYRSD------RTCIAASARLHTIQWNRENSLA-----MTFIPFEKANQFPENMP 429
                L+ +          +        IQ     + A     +   P          + 
Sbjct: 148 WISARLWATAFTLVLIGLIVTYVMVARIIQPLDRLTHAAEQMALGESPKGLNFDSQNEIG 207

Query: 430 QNGIEPEDVDTRINKR---------KMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
                  ++D ++ +R         ++E +  QL ++L +  +G+  ++R   IL  N  
Sbjct: 208 TLARTLRNMDRQLAQRFSELEKQSQELEEKHEQLATVLRSMIEGVIAVDRSEQILFANDT 267

Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
           V +L     +  +R+P    +       +   +   LS    + +E       + ++ L+
Sbjct: 268 VFQLLDVQPQSFMRRPIWEAVRH---PQVQKIVQAALSGQPSEKVEFDV---ARTQRTLA 321

Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
           +         ++   L +HD+++ ++ +              + + +F++ VSHE++TPL
Sbjct: 322 MVASPLPGEPATGAVLVLHDVTDLRRLE--------------NLRREFVSNVSHELKTPL 367

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
           T+I  ++E + N             +   I+     +  ++ DL+ +++++S +     E
Sbjct: 368 TSISAYAETLLNGAM--EDEETCRTFLQRIEEQAERLNKLIADLIALARLDSIEQAFELE 425

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720
           PV+    + ++I   Q  A  K+I + +   N+   ++AD    + I  N+L NA+++TP
Sbjct: 426 PVNATYILQKSIDEHQGVAKSKQIELISVAPNDEMEVIADSDGFQTIIDNLLDNALNYTP 485

Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
           +GGQ+ +       E   + V DTGVG+      +  + F ++  ++     GTGLGL +
Sbjct: 486 AGGQVTVRWR-RDGEWSRIDVEDTGVGIPREHQARIFERFYRVDKARSREVGGTGLGLSI 544

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            K +     G   + S    G+   ++ 
Sbjct: 545 VKHLCQVFGGSIRVTSQVGSGSQFTVLL 572


>gi|163846956|ref|YP_001635000.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|163668245|gb|ABY34611.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
          Length = 797

 Score =  311 bits (797), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 100/640 (15%), Positives = 206/640 (32%), Gaps = 44/640 (6%)

Query: 197 GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP--PHLRMKNKVSSLTEYYAHKDDVL 254
             RL      L  +      +    +     Q     P + M    S +    A +    
Sbjct: 39  LARLRAHQPDLILLDLQLPDMNGLDFLRILTQEGIDIPVILMTAHGSEMIAVEAFRLGAR 98

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
                P   +E       E        +  K++    +    +   E             
Sbjct: 99  NYLIKPFSDTEAR-----EAIDQALRERRLKRERDRLVGLLQQRVQELTVLTRVGKSVTA 153

Query: 315 FDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
             +   L    V+   +       G LF  +     L      +    +     L     
Sbjct: 154 LIDQRQLLDRIVEAA-VYITQADEGMLFQYSDQGNELIPLAFRNVAVESPHQLRLQVTNS 212

Query: 375 LSDNNAIKPVMLYRSDRTC---------IAASARLHTIQWNRENSLAMTFIPFEK----- 420
           L+         L                    A L T     +    +  +   +     
Sbjct: 213 LAGQVIQSGKSLRLHSGVTGEPITIAPAFVVQATLQTPLQVGDRITGVLVVNHRRSNRSF 272

Query: 421 -ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
             +               ++     +  +    +  +I    SD I +++    I+S N+
Sbjct: 273 SESDQYLLAALADYAAIALENARLYQAAQRNEARYRTIFTNASDMILMLDASWRIISGNQ 332

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
           + +++ G    D++ +    +        +   L  + S   +          +KE  ++
Sbjct: 333 SSAQILGVAESDLVGQSLQRWCLAQEWPTIAQALQRVASGLPQPPFTVSLQRQSKELAIV 392

Query: 540 SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
            +      +   +       D++E ++ + +L  + K+     S     +A V+HE+  P
Sbjct: 393 EMNAQRLNVDDQAMIVCVGRDLTERRRLEQQLIQSDKL-----SALGQLVAGVAHELNNP 447

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L +I G+++++   R  P            I +  +    IV +LL  ++    +     
Sbjct: 448 LASISGYAQLLMRNRTLP---EDVRADVEQIRQQADRASRIVRNLLMFAR----EHKPER 500

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719
             V ++E V   +SL         I ++      +P+ LAD   ++Q+ LN+++NA    
Sbjct: 501 LLVQINEVVQSTLSLQAYQLRVDNITVQLELDPELPQTLADPHQLQQVLLNLITNARQAM 560

Query: 720 PSG--GQIIISTTHTSNEE---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
                G + I T +    +   + + V DTG+G+    L+K   PF          G+GT
Sbjct: 561 SEKGSGVLTIRTRNCETGDGSFIEITVSDTGIGIPAQYLDKIFNPFFTTKP----VGQGT 616

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           GLGL +   ++  + G+ ++ S    GT + I  P+  TS
Sbjct: 617 GLGLSICYGIIQEHKGQIWVESHEGIGTTVFIRLPVISTS 656


>gi|320353332|ref|YP_004194671.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
           2032]
 gi|320121834|gb|ADW17380.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
           2032]
          Length = 957

 Score =  311 bits (797), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 103/665 (15%), Positives = 211/665 (31%), Gaps = 71/665 (10%)

Query: 190 DNDPRALGKRLDKKFSHL--HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247
                 L   L      +   +++     +      +    S   H +   +V  + +  
Sbjct: 196 QQAREQLDTTLRSIQDAVISTDVRGQIRYMNPVAETLTGWSSFEAHNKRLAEVVRVVDQE 255

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
           +H + +L   +  L + +   L            +Y   +    + +   +    +    
Sbjct: 256 SH-EQLLDPVERVLESGKPVLLTNHTLLVGRGGAEYHISENAAPMHDAEGKLTGVVLVFR 314

Query: 308 HPSLSAYFDEGENLTPETV-----DKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIE 361
             +      E    +             +   +    G +  AN +      +      E
Sbjct: 315 DVTPEYETREQLRKSESLFRNIFEHHAAVKLLIDPDSGAILEANEAAEHFYGWSRQQLKE 374

Query: 362 -IAGGLSTLLDAPKLSDNNAIK-------PVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
                ++ L       +    +             +D +         +I+ + ++ L  
Sbjct: 375 MRIQDINRLASDEISQEMEKARSSQRVHFEFRHRMADGSVRDVEVFSSSIEVHGKSILH- 433

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI-AIINREG 472
                              I  +    +  +R +      L SI  A   GI  +++R  
Sbjct: 434 ------------------SIVHDVTAQKQAERDLRASQEYLGSIFRAAPVGIGVVVDR-- 473

Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
           + +  N  +  + GY  +++L +  +  L             + L +  +      T   
Sbjct: 474 VFILVNDHLCAMTGYSRDELLGQN-SRMLYPTDEDFTFVGTEKYLQIQQKNIGTVETRWL 532

Query: 533 TKEEKLLSLRIIIKKLPF---SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH--KSD 587
            K+   + + +    L     S+  + +  DISE K  + +    +    +         
Sbjct: 533 CKDGTCIDVLLSSSPLDAKNLSAGVTFSALDISERKHAEQEREKLQGQLVQAQKMDSVGR 592

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
               V+H+    L+ I+G++E+   Q      +     +   I  +G    DI+  LL  
Sbjct: 593 LTGGVAHDFNNILSVILGYTEIAMEQ---TRADSPLYGHLQKIREAGQRSADIIRQLLAF 649

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707
           S+    +  +  + + L+ AV   + ++Q     + I +    A  +P +  D   + Q+
Sbjct: 650 SR----QQTIAPKVLDLNIAVGGLVKMLQRLI-GENIHLAWMPAPLLPLVHIDPAQIDQV 704

Query: 708 ALNILSNAIHFTPSGGQIIISTT--------------HTSNEEVILRVRDTGVGMTNYEL 753
            +N+  NA       G + I T                 + E V+L V D G GM    +
Sbjct: 705 LINLCVNARDAIDGVGSMTIETRAVTVDAEYCTQNAGFAAGEYVVLSVSDNGCGMEPAVM 764

Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
           EK  +PF          G+GTGLGL     +V  N G   ++S P +GT   I  P Y  
Sbjct: 765 EKIFEPFYTTKG----VGQGTGLGLATVYGIVKQNHGFINVYSEPGQGTTFRIYLPQYTE 820

Query: 814 SHPHD 818
           S   D
Sbjct: 821 SETID 825



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 35/377 (9%), Positives = 100/377 (26%), Gaps = 22/377 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN----NHIGDLLKRQNTW- 143
            D  G ++ ++       G  +F+    RL +V  ++  + +    + +  +L+      
Sbjct: 216 TDVRGQIRYMNPVAETLTGWSSFEAHNKRLAEVVRVVDQESHEQLLDPVERVLESGKPVL 275

Query: 144 -YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
               T L    G   ++     A P++    + +G     +      + + R   ++ + 
Sbjct: 276 LTNHTLLVGRGGAEYHISE--NAAPMHDAEGKLTGV--VLVFRDVTPEYETREQLRKSES 331

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
            F ++ E       +         + +             L E      + L +++    
Sbjct: 332 LFRNIFEHHAAVKLLIDPDSGAILEANEAAEHFYGWSRQQLKEMRIQDINRLASDEISQE 391

Query: 263 TSEESS---LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH--RNHPSLSAYFDE 317
             +  S   +  +      + +    + +  +++ + K     + H              
Sbjct: 392 MEKARSSQRVHFEFRHRMADGSVRDVEVFSSSIEVHGKSILHSIVHDVTAQKQAERDLRA 451

Query: 318 GENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
            +          P+   V         N     +T Y   + +      S +L       
Sbjct: 452 SQEYLGSIFRAAPVGIGVVVDRVFILVNDHLCAMTGYSRDELLGQN---SRMLYPTDEDF 508

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
                   L    +       R           + +        +    +        + 
Sbjct: 509 TFVGTEKYLQIQQKNIGTVETR---WLCKDGTCIDVLLSSSPL-DAKNLSAGVTFSALDI 564

Query: 438 VDTRINKRKMEIEVMQL 454
            + +  +++ E    QL
Sbjct: 565 SERKHAEQEREKLQGQL 581


>gi|116490222|ref|YP_809766.1| PAS/PAC sensor signal transduction histidine kinase [Oenococcus
           oeni PSU-1]
 gi|116090947|gb|ABJ56101.1| PAS/PAC sensor signal transduction histidine kinase [Oenococcus
           oeni PSU-1]
          Length = 633

 Score =  311 bits (797), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 86/408 (21%), Positives = 169/408 (41%), Gaps = 37/408 (9%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
            +  ++      Q     + + +        +E  +L S+L   +DG+  I R+G I   
Sbjct: 245 IKSKDEIGILATQINDLSDTIASETATSN--MESDRLNSLLSNMTDGVLAITRDGTITVI 302

Query: 478 NRAVSKLFGYPVED-ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
           N+A   L   P     + K  +  L+     +    L        +     +      + 
Sbjct: 303 NQAALDLLHIPRTYKAVGKNISDLLKLVDKKITLRKL-------FQSIRGFVVEPDGPDG 355

Query: 537 KLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
             L+    + +      S   + + D++   + +             +  K+ F++ VSH
Sbjct: 356 VTLNAVASLVRRQSGFISGAVVVLRDVTRQLKLE-------------NDQKN-FVSNVSH 401

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           E+RTPLT++  + E ++          R  E+          ++ ++NDLL++S+++ G+
Sbjct: 402 ELRTPLTSVNSYIETLQEGALTQKKIAR--EFLGVAHDETQRMIHMINDLLELSRMDQGR 459

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKR--------ILIRTSFANNIPRILADLRSVKQ 706
             +  E V+  + ++  +    +   +           +IR         +  D     Q
Sbjct: 460 TKMDTEAVNFTKFINYVLDRFDVMFKQGHSMHSDNHYKIIRNYDQKKSCYVEIDSDKFMQ 519

Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
           +  N+++NAI+++P GG I I    T +  +IL ++D G+G+   +LE     F ++  S
Sbjct: 520 VVDNVINNAINYSPDGGNIEIGINETDD-SIILSIKDHGLGIPKKDLENVFTRFYRVDKS 578

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           +  +  GTGLGL ++K +V+A  GK  + ST   GT   I  P  DTS
Sbjct: 579 RARKQGGTGLGLAISKEVVEALHGKIRVESTVNVGTTFFISLPKVDTS 626


>gi|314934942|ref|ZP_07842301.1| sensory box histidine kinase VicK [Staphylococcus caprae C87]
 gi|313652872|gb|EFS16635.1| sensory box histidine kinase VicK [Staphylococcus caprae C87]
          Length = 610

 Score =  311 bits (797), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 78/388 (20%), Positives = 171/388 (44%), Gaps = 29/388 (7%)

Query: 426 ENMPQNGIEPEDVDTRINKRKM--EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           + + +  +   ++  R+ + +   E E  +L S++   SDGI   +R G +   N    K
Sbjct: 237 DEIGELALAFNNLSKRVQEAQANTESEKRRLDSVITHMSDGILATDRRGRVRIANDMALK 296

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           + G   ED++       L       ++       S  L    E+  +        ++   
Sbjct: 297 MLGLAKEDVIGYYMLGLLNLENEFSLDEIQENNDSFLLDINEEEGIIAR------VNFST 350

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
           I+++  F + Y   +HD++E +Q + +              + +F+A VSHE+RTPLT++
Sbjct: 351 IVQQTGFVTGYIAVLHDVTEQQQVERE--------------RREFVANVSHELRTPLTSM 396

Query: 604 IGFSEVIKNQRFGPLGNPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
             + E ++    G   +     ++ +        ++ +VNDLL +SK+++    +  E V
Sbjct: 397 NSYIEALEE---GAWQDESLAPQFLSVTREETERMIRLVNDLLQLSKMDNESDQITKEIV 453

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
             +  +++ I+  +     K                 D   + Q+  N+++NA+ ++   
Sbjct: 454 DFNMYINKIIN--RHEMAAKDTTFVREIPQQTIFTEIDPDKMTQVFDNVITNAMKYSRGD 511

Query: 723 GQIIISTTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
            ++       +    + +R++D G+G+   +++K    F ++  ++  +  GTGLGL ++
Sbjct: 512 KRVEFHVKQNALYNRMTIRIKDNGIGIPINKVDKIFDRFYRVDKARTRKMGGTGLGLAIS 571

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           K +V+A+ G+ +  S   +GT I I  P
Sbjct: 572 KEIVEAHNGRIWANSVEGQGTSIFITLP 599


>gi|294646773|ref|ZP_06724396.1| PAS domain S-box [Bacteroides ovatus SD CC 2a]
 gi|294807695|ref|ZP_06766488.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b]
 gi|292637933|gb|EFF56328.1| PAS domain S-box [Bacteroides ovatus SD CC 2a]
 gi|294445131|gb|EFG13805.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b]
 gi|295084434|emb|CBK65957.1| PAS domain S-box [Bacteroides xylanisolvens XB1A]
          Length = 820

 Score =  311 bits (797), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 104/490 (21%), Positives = 184/490 (37%), Gaps = 33/490 (6%)

Query: 338 HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397
            G + +AN  FL        +DI      +    A  +    A                 
Sbjct: 202 DGTIIFANRRFLYNHGISENEDISQLKIYN---VAADMPTQEAWNERCKDVIHGGSSNFV 258

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
           A   +       +   T       +             +  +    + +++     + + 
Sbjct: 259 AHHPSKINKGILAYEGTMYNVTNDSGEESYWSFA---HDISERIRYEAQIKRLNQIMDTT 315

Query: 458 LEATSDGIAI--INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           +     GI +  IN +   +  NR           D + K    F              +
Sbjct: 316 INNLPAGIVVKEINNDFRYIYRNREAYNR-DLYKNDPVGKNDFDFYPPIVAEKKRQEDIQ 374

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNKL 571
           + +      L     G  +   ++ L     ++               DI+E +  K +L
Sbjct: 375 VATTGK--GLHWTAEGKDRNGNMIILDKRKIRVDGDELSSPIIVSIEWDITELEMIKREL 432

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
             +K+ AE   S KS FLA +SHEIRTPL AI+GFS +I               Y N ++
Sbjct: 433 QSSKEKAEMSDSLKSAFLANMSHEIRTPLNAIVGFSHLIAESD----DAEERKTYYNIVN 488

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA--ISLVQLYANEKRILIRTS 689
            +   +L ++N++LD+SKIESG +   F P SL     E     + +     + + +   
Sbjct: 489 ANNERLLQLINEILDLSKIESGTIEFSFGPASLHNLCREVHDAHIFRT---PQGVSLVYE 545

Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-SNEEVILRVRDTGVGM 748
            ++    I  D   V Q+  N++ NA+ FT  G    IS  +  ++ +++  V DTG G+
Sbjct: 546 SSDESLMIETDKNRVFQVISNLIGNAVKFTKEGS---ISYGYKLADNQIVFHVTDTGTGI 602

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
              ++ +  + F ++ N      +GTGLGL + K++V+   GK  + S   KGT      
Sbjct: 603 EPEKVGRVFERFAKLNN----HAQGTGLGLSICKSIVERLGGKISVNSEFGKGTTFTFTL 658

Query: 809 PLYDTSHPHD 818
           P Y  ++P +
Sbjct: 659 P-YTIANPAN 667



 Score = 48.9 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/281 (11%), Positives = 80/281 (28%), Gaps = 18/281 (6%)

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDI 360
           +Y       ++    ++             I  + Y+     +          Y  V   
Sbjct: 43  QYRDITQRSNVKRQLEQANLTLRAIQKVAQIGQWTYNTKQNIFH------YLGYTGVLCE 96

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
           E    L+       + + +    +   R +   +   +  + ++ N E    M    + +
Sbjct: 97  ENVQNLAIEKYVELIVEEDRQSFMEWCRVNEKELNMESISYRVRLNGE-IFYMRIQTYLR 155

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
             +   +    G      D     +    ++  L   +    + I     +G I+  NR 
Sbjct: 156 EQRSDGSFNIEGYIQNITDI----QHRRNDINTLTHAINNAKESIFAAKPDGTIIFANRR 211

Query: 481 VSKLFGYPVEDILRK--PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
                G    + + +   + V  +  T    N    +++       +        K   +
Sbjct: 212 FLYNHGISENEDISQLKIYNVAADMPTQEAWNERCKDVIHGGSSNFVAHHPSKINK--GI 269

Query: 539 LSLRIIIKKLPFSSC---YSLTMHDISEWKQEKNKLSHAKK 576
           L+    +  +   S    Y    HDISE  + + ++    +
Sbjct: 270 LAYEGTMYNVTNDSGEESYWSFAHDISERIRYEAQIKRLNQ 310


>gi|302037639|ref|YP_003797961.1| putative hybrid histidine kinase [Candidatus Nitrospira defluvii]
 gi|300605703|emb|CBK42036.1| putative Hybrid histidine kinase [Candidatus Nitrospira defluvii]
          Length = 950

 Score =  311 bits (797), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 102/524 (19%), Positives = 191/524 (36%), Gaps = 45/524 (8%)

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEI 362
               HP  +A       +     D  P+  F+  +   + +AN +   L           
Sbjct: 8   PRTPHPQHAAGLSVPPEVLTLLWDAVPLGIFLLGAEQTVIFANRTAARLFARSPAACAGH 67

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
           A  LS LL       ++     ++   D     A       + +     +          
Sbjct: 68  A--LSDLLGQRLDLSDSLRATGIVKLPDGRFSPAGQTASDDESD--TGHSTVIEWQHLRI 123

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
               ++       +       + ++E +  +L  + E +   I  I+R G ++  N A++
Sbjct: 124 SGIPSVATLMTLRDVS----REVELEKDRDRLAEVAEESPYPIVEIDRHGNLVYANPAMA 179

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
            + G    D+  KP    L  N P+++   L E  +L  +  +                 
Sbjct: 180 DVLGRFGYDLAGKP--EILPDNLPALVATCLLEGRTLTSQDVVRGEACY----------S 227

Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH--------------KSDF 588
             +  +P          D+SE       L+       + +                KS F
Sbjct: 228 WTLCPVPGHGLVRAFAIDLSEVHATHRALNETADRLRESNRQLDQALQQAQTAARAKSSF 287

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
           LA ++HE+RTP+  +IG + ++               + N I + G   L ++ND+L+ S
Sbjct: 288 LAMITHELRTPMNGVIGMASLLLETPL----TEEQRSFTNTIQQCGEAQLSLINDVLECS 343

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQI 707
           KIE+GK+ L      L   V + +S     A  K + I       +P  +  D   ++Q+
Sbjct: 344 KIEAGKLELEHLDFYLRTTVEDVLSQFAERAQRKGLEITGLVHAAVPNALRGDPGRLRQV 403

Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQI 763
             N + NAI FT  G ++ +      +      +   V D+G+G++     +  + F Q 
Sbjct: 404 LTNFVGNAIKFTERG-EVTLQAFLERDSPSEVIIKFEVTDSGIGISEDVQSRLFQAFTQA 462

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
            +S   +  GTGLGL ++K +V+   G+  + S P +GT     
Sbjct: 463 DSSTTRKYGGTGLGLAISKQLVELMGGQVGLRSQPGQGTTFWCT 506


>gi|188579776|ref|YP_001923221.1| multi-sensor hybrid histidine kinase [Methylobacterium populi BJ001]
 gi|179343274|gb|ACB78686.1| multi-sensor hybrid histidine kinase [Methylobacterium populi BJ001]
          Length = 1215

 Score =  311 bits (797), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 123/834 (14%), Positives = 245/834 (29%), Gaps = 101/834 (12%)

Query: 48   SFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTV-RFTWNIDAHGYLKEISEELPKTI 106
            + ++      +  +   T     ++   F  I  +V +  W+    GY    ++      
Sbjct: 271  TPQRFPGVSFDITARKRTEQALRDSEDRFRGIINSVDQMIWSTRPDGYHDFYNDRWYAFT 330

Query: 107  GNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAA 165
            G  A    G     +      +         L    T+  K  L    G  LY  +   A
Sbjct: 331  GVPAGSTDGAAWDAIVHPDDRERTWADWRHALDTGETYQIKYRLRHRSG--LYRWVLGRA 388

Query: 166  LPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE---------------- 209
             P+   +      R FG                 L      L E                
Sbjct: 389  QPVREADGRI--MRWFGTCTDIHDLKLAEERQAFLLNLNDRLRETDDPLSVTLAAAATLG 446

Query: 210  -----IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
                  + G+  +++    +  ++       + +              V+   +      
Sbjct: 447  AHVGAARAGYGEIDEAGEIVRVERDWTRDPSVPSLAGESRILDEFGPAVIVELRAGRTLV 506

Query: 265  EESSLPEQEDFHTINLNQYT---KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG--- 318
             E    +            +   +      L    +       H   P +    + G   
Sbjct: 507  VEDCYTDPRAGRRYAATWDSIGCRSLVIVPLIREGRLRAILYLHEPQPRVWQPQEIGLVE 566

Query: 319  ----------------------ENLTPETVDKCPIPFFVYSHGNL-FYANPSFLLLTKYK 355
                                          D  P+   ++  G L  +AN +        
Sbjct: 567  DVAQRAGHAAERARAEQAQRANARELQLITDTLPVLIALFDAGGLCRFANAASADWFGMP 626

Query: 356  SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
                I     L+TL+     ++            D       A    ++ +   S     
Sbjct: 627  PDAAIGQ--SLATLVGDEAFTEARPRFEAACAGRD-----VRAERVWLRRDG-PSRIADI 678

Query: 416  IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV----MQLCSILEATSDGIAIINRE 471
                +               +  D +  +  +  EV     +   + + T+D +     +
Sbjct: 679  RYRPRPMPDGSTEGAYLFVTDISDAKRIEAMLAREVGERTRERDRLWQTTNDLMGTAGLD 738

Query: 472  GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
            G + S N A  +L G+   ++L +PF  F++    +     +  + + +         L 
Sbjct: 739  GRLRSVNPAWERLLGWSERELLERPFLDFIDPEDHAGTGAVMARLAASERITDFVDRILT 798

Query: 532  STKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
                 + +        +P   C+ +   DI+E +  + +L  A+K+              
Sbjct: 799  RDGRRRTVMWTA----VPEGDCFHVVGRDITEQRLAEEQLRQAQKM-----EAVGQLTGG 849

Query: 592  VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
            ++H+    LT I+G  + +   R           YA     S +    + + LL  ++  
Sbjct: 850  IAHDFNNLLTGIVGSLD-LMQTRIAQGRVDALDRYARAALSSAHRAAALTHRLLAFAR-- 906

Query: 652  SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
              +  L  +PV ++  V+    +++  A  +++ +    A ++   L D   ++   LN+
Sbjct: 907  --RQPLEQKPVDVNVLVTGMADMLR-RALPEQVRLDIVTAGDLWLTLCDPHQLENAVLNL 963

Query: 712  LSNAIHFTPSGGQIIIST--------------THTSNEEVILRVRDTGVGMTNYELEKAM 757
              NA    P GG+++I T                     V +RV DTG GM      +A 
Sbjct: 964  AINARDAMPEGGRLLIETCNTRLGLPDLRLHPEAREGAYVGVRVTDTGAGMPPEVAARAF 1023

Query: 758  KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
            +PF          G GTGLGL +       + G   I S P +GT + I  P +
Sbjct: 1024 EPFFTTKPL----GMGTGLGLSMIYGFARQSEGHVRISSEPGRGTAVTIYLPRH 1073



 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 33/394 (8%), Positives = 93/394 (23%), Gaps = 22/394 (5%)

Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSSLTEYYAHK 250
           P      L    + + +           +   F   +  P    R+   + +        
Sbjct: 30  PETWPVSLRTILATMLDCPAAMFLAWGPEGITFFNDAYRPVFGDRLPRALGARFREIWSD 89

Query: 251 --DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY-TKKQYFGTLQNNSKESFEYLSHRN 307
             DD+       L     +        +   + +       +  ++++       +    
Sbjct: 90  VWDDIGPLVDAALRGESVAQRNLPLMMNRYGVPERSWWSFTYSPVRDDEGRINGMICVTA 149

Query: 308 HPSLSAYFDEGENLTPETVDKC-----PIPFFVYS--HGNLFYANPSFLLLTKYKSVDDI 360
             +     ++    + E +D        I  + +      +  A+  F  L   +     
Sbjct: 150 ETTAEVLAEQARRRSEERLDMALSAGGSIGVWDWDVAADRVT-ADSRFAALYGVEPERA- 207

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
             AG       +    D+       +     T     A    +Q +  +   +       
Sbjct: 208 -QAGAPIRDFFSGVHPDDLPRLRSSIEAVLGTGGRFEAEYRLVQADG-SIRWVAAQGRCI 265

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
                      G+  +    +  ++ +     +   I+ +    I     +G     N  
Sbjct: 266 LAADGTPQRFPGVSFDITARKRTEQALRDSEDRFRGIINSVDQMIWSTRPDGYHDFYNDR 325

Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
                G P        +   +  +            L     +T +       +      
Sbjct: 326 WYAFTGVPAGSTDGAAWDAIVHPDDRERTWADWRHALDTG--ETYQIKYRLRHRSGLYRW 383

Query: 541 LRIIIKKLPFSSC----YSLTMHDISEWKQEKNK 570
           +    + +  +      +  T  DI + K  + +
Sbjct: 384 VLGRAQPVREADGRIMRWFGTCTDIHDLKLAEER 417



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/447 (7%), Positives = 96/447 (21%), Gaps = 37/447 (8%)

Query: 26  SKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRF 85
           S + ++ G +T +    +P  D+      T       +    +      +F         
Sbjct: 3   SLRFLEEGGQTGREILAHPWADTPLGPPET-WPVSLRTILATMLDCPAAMF--------L 53

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN-TWY 144
            W     G +   ++      G+   + +G R  ++   +  D    +   L+ ++    
Sbjct: 54  AW--GPEG-ITFFNDAYRPVFGDRLPRALGARFREIWSDVWDDIGPLVDAALRGESVAQR 110

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
               +    G            P+       +G                +A  +  ++  
Sbjct: 111 NLPLMMNRYGVPERSWWSFTYSPVRDDEGRINGMICV-TAETTAEVLAEQARRRSEERLD 169

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSP--------PPHLRMKNKVSSLTEYYAHKDDVLKT 256
             L               D  +  S         P   +    +          D     
Sbjct: 170 MALSAGGSIGVWDWDVAADRVTADSRFAALYGVEPERAQAGAPIRDFFSGVHPDDLPRLR 229

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS----HRNHPSLS 312
                +         +      + +          +         +              
Sbjct: 230 SSIEAVLGTGGRFEAEYRLVQADGSIRWVAAQGRCILAADGTPQRFPGVSFDITARKRTE 289

Query: 313 AYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
               + E+     ++      +     G   + N  +   T          AG       
Sbjct: 290 QALRDSEDRFRGIINSVDQMIWSTRPDGYHDFYNDRWYAFTGVP-------AGSTDGAAW 342

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
              +  ++  +    +R            + ++        +              M   
Sbjct: 343 DAIVHPDDRERTWADWRHALDTGETYQIKYRLRHRSGLYRWVLGRAQPVREADGRIMRWF 402

Query: 432 GIEPEDVDTRINKRK---MEIEVMQLC 455
           G   +  D ++ + +   +     +L 
Sbjct: 403 GTCTDIHDLKLAEERQAFLLNLNDRLR 429



 Score = 68.5 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 28/312 (8%), Positives = 79/312 (25%), Gaps = 18/312 (5%)

Query: 287 QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANP 346
           +  G             +    P           +    +D     F  +    + + N 
Sbjct: 8   EEGGQTGREILAHPWADTPLGPPETWPVS--LRTILATMLDCPAAMFLAWGPEGITFFND 65

Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
           ++  +   +    +         + +    D   +    L             ++     
Sbjct: 66  AYRPVFGDRLPRALGARF---REIWSDVWDDIGPLVDAALRGESVAQRNLPLMMNRYGVP 122

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT-SDGI 465
             +  + T+ P    +          +  E     + ++       +L   L A  S G+
Sbjct: 123 ERSWWSFTYSPV--RDDEGRINGMICVTAETTAEVLAEQARRRSEERLDMALSAGGSIGV 180

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILR----KPFTVFLEQNTPSVMNHYLTEILSLDL 521
              +     ++ +   + L+G   E        + F   +  +    +   +  +L    
Sbjct: 181 WDWDVAADRVTADSRFAALYGVEPERAQAGAPIRDFFSGVHPDDLPRLRSSIEAVLGTGG 240

Query: 522 RQTLEKITLGSTKEEKLLSL----RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI 577
           R   E        +  +  +    R I+        +     DI+  K+ +  L  ++  
Sbjct: 241 R--FEAEYRLVQADGSIRWVAAQGRCILAADGTPQRFPGVSFDITARKRTEQALRDSEDR 298

Query: 578 AEKESSHKSDFL 589
                +     +
Sbjct: 299 FRGIINSVDQMI 310



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/379 (8%), Positives = 77/379 (20%), Gaps = 33/379 (8%)

Query: 90   DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG-KTT 148
               G L+ ++    + +G    +++     D  D         +   L            
Sbjct: 736  GLDGRLRSVNPAWERLLGWSERELLERPFLDFIDPEDHAGTGAVMARLAASERITDFVDR 795

Query: 149  LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIV-HVNRVDNDPRALGKRLD------ 201
            +   +G      +   A+P             F +V              ++        
Sbjct: 796  ILTRDGR--RRTVMWTAVPEGD---------CFHVVGRDITEQRLAEEQLRQAQKMEAVG 844

Query: 202  KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
            +    +        +      D+   +     +   ++ +      AH+   L       
Sbjct: 845  QLTGGIAHDFNNLLTGIVGSLDLMQTRIAQGRVDALDRYARAALSSAHRAAALTHRLLAF 904

Query: 262  LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
                +    +  D + +        +     Q                      +   NL
Sbjct: 905  AR-RQPLEQKPVDVNVLVTGMADMLRRALPEQVRLDIVTAGDLWLTLCDPHQLENAVLNL 963

Query: 322  TPETVDKCPIPFFVYSHGNLFY--ANPSF----LLLTKYKSVDDIEIAGGLSTLLDAPKL 375
                 D  P        G L     N       L L                T    P  
Sbjct: 964  AINARDAMPEG------GRLLIETCNTRLGLPDLRLHPEAREGAYVGVRVTDTGAGMPPE 1017

Query: 376  SDNNAIKPVMLYRSDR-TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
                A +P    +          + ++      E  + ++  P              G  
Sbjct: 1018 VAARAFEPFFTTKPLGMGTGLGLSMIYGFARQSEGHVRISSEPGRGTAVTIYLPRHLGAL 1077

Query: 435  PEDVDTRINKRKMEIEVMQ 453
              + +          E  +
Sbjct: 1078 AAEPEPASPAEPARAERNE 1096


>gi|229119504|ref|ZP_04248799.1| hypothetical protein bcere0017_57320 [Bacillus cereus Rock1-3]
 gi|228663970|gb|EEL19516.1| hypothetical protein bcere0017_57320 [Bacillus cereus Rock1-3]
          Length = 811

 Score =  311 bits (797), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 101/558 (18%), Positives = 221/558 (39%), Gaps = 45/558 (8%)

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
           LP   D  TI  +    K+    ++         +      +        +      ++ 
Sbjct: 282 LPWPNDEATILFSLRPVKRGGTVVE----VVGSTVDITKRINAENELKVTKERLESFINH 337

Query: 329 CPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
                 ++   G++  AN ++  +  +   + +        L   P+   +  ++ +   
Sbjct: 338 NVDAITIFDLDGHMLQANKAYERIFGWSEKESVGKK-----LPCVPEFLIDQTLEYINHI 392

Query: 388 RSDRTCIAASARLHTIQ-WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
           ++         R  T++    +  + ++       +     +  +GI  +  + +  +RK
Sbjct: 393 KNTNMNDPILTRFETVRQRKDKTLIDVSLTISPILDFRGNVIALSGICRDISERKQAERK 452

Query: 447 MEIEVMQL-------CSILEATSDGIAII---NREG--IILSTNRAVSKLFGYPVEDILR 494
           +     QL        +++E  +D + ++   + E     +  N    K FGY  E++L 
Sbjct: 453 LHQLHQQLSDSEMKYRALIEQATDAVYVVELNDNELPTRFIEVNPVACKRFGYSREELLS 512

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554
             F   +  ++  ++   + +I       TL+   +    +   +   I +  L     +
Sbjct: 513 MSFPSNVLPDS-PMVQRIIEKIREGQTSFTLQDEFVFPRGKTLTIEFSIRVFNLNGKKVF 571

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E  + +  L  ++K+A             ++HEI+ PLTA+ GF +++++  
Sbjct: 572 LSISRDITERLKTEELLRKSEKLAVV-----GQLSTAIAHEIKNPLTAMKGFMQLLQS-- 624

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
              LGN     Y + +      +  I ++ + ++K E+    L  +   L+  + + + L
Sbjct: 625 ---LGNKDTEHYIDIVLSEIERIDSITSEFMTLAKPEA----LEIKTNDLNVLMKQVVML 677

Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-S 733
           ++  A    I I+T F ++   IL +   +KQ+ +NIL NAI  T  GG+I+I   +   
Sbjct: 678 LEPQATMNCIQIKTQFTSDTSFILCECNQLKQVFINILKNAIEATSMGGEILIQIEYAPD 737

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
             +V +R  D G G+    +    +PF        ++  G GLGL +   +++ + GK +
Sbjct: 738 QNQVNIRFTDYGCGIEQERIPYLGEPFY------SLKENGIGLGLMICYKIIEKHQGKIF 791

Query: 794 IFSTPAKGTLIEIIFPLY 811
           I S   KGT + I  P+ 
Sbjct: 792 IESEVGKGTTVNIDLPIS 809



 Score = 48.5 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/266 (10%), Positives = 71/266 (26%), Gaps = 27/266 (10%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRL---CDVSDILHIDPNNHIGDL-LKRQNTWYG 145
           D  G++ + ++   +  G    + +G +L    +      ++  NHI +  +        
Sbjct: 346 DLDGHMLQANKAYERIFGWSEKESVGKKLPCVPEFLIDQTLEYINHIKNTNMNDPILTRF 405

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +T     + T + V + ++  PI           G  I               +L ++ S
Sbjct: 406 ETVRQRKDKTLIDVSLTIS--PILDFRGNVIALSG--ICRDISERKQAERKLHQLHQQLS 461

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLR--------------MKNKVSSLT-EYYAHK 250
                 +       +   +          R               + ++ S++       
Sbjct: 462 DSEMKYRALIEQATDAVYVVELNDNELPTRFIEVNPVACKRFGYSREELLSMSFPSNVLP 521

Query: 251 DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310
           D  +       +   ++S   Q++F        T +               +LS     +
Sbjct: 522 DSPMVQRIIEKIREGQTSFTLQDEFVFPRGKTLTIEFSIRVFN--LNGKKVFLSISRDIT 579

Query: 311 LSAYFDEGENLTP--ETVDKCPIPFF 334
                +E    +     V +      
Sbjct: 580 ERLKTEELLRKSEKLAVVGQLSTAIA 605


>gi|224371381|ref|YP_002605545.1| sensory box histidine kinase/response regulator [Desulfobacterium
           autotrophicum HRM2]
 gi|223694098|gb|ACN17381.1| sensory box histidine kinase/response regulator [Desulfobacterium
           autotrophicum HRM2]
          Length = 967

 Score =  311 bits (797), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 79/256 (30%), Positives = 131/256 (51%), Gaps = 12/256 (4%)

Query: 560 DISEWKQEKNK----LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
           D+S+ K+        L  AK+ AE+ S  KS FLA +SHEIRTP+  ++G +E++     
Sbjct: 276 DLSQAKKALEAMVVTLEKAKETAEEASRAKSQFLANMSHEIRTPMNGVLGMAELLMETDL 335

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
                     ++  I  SG+ +L I+ND+LD SKIE+GK+ L     +L   + + + ++
Sbjct: 336 ----TEEQRRFSKTIQSSGSSLLAIINDILDFSKIEAGKLELETINFNLQILIDDVMQML 391

Query: 676 QLYANEKRILIRTSFANN-IPRILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTS 733
              A+ K++ +           +  D    +Q+  N++ NAI FT  G  ++ ++TT + 
Sbjct: 392 ASRAHAKQLELAVLIPPETCIFLRGDPTRFRQVLTNLVGNAIKFTKQGEVVVQVATTVSD 451

Query: 734 NEEVILRV--RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
              V L V  RDTG+G++  +L++   PF Q   S   +  GTGLGL ++K +V    G 
Sbjct: 452 QNRVKLHVLIRDTGIGISQQDLQRLFSPFSQADGSTTRKYGGTGLGLAISKEIVALMGGD 511

Query: 792 FYIFSTPAKGTLIEII 807
            +  S P KG+     
Sbjct: 512 LHCESEPGKGSTFSFT 527


>gi|118580297|ref|YP_901547.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
 gi|118503007|gb|ABK99489.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
          Length = 604

 Score =  311 bits (797), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 92/425 (21%), Positives = 169/425 (39%), Gaps = 47/425 (11%)

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
            + Q  +E +  + R  + +  +       + +    G   ++R+GII + N   S L G
Sbjct: 35  QVYQIELEMQVEELRQARDEEAMAREMYADLYDFAPVGYVTLDRDGIIRNANLTGSVLLG 94

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
                ++ +   VF+   +      +L ++ +   +   E   +     E  + +  +  
Sbjct: 95  VVRSQLIGQRLGVFVAVVSRPAFADFLEKVFTSPTKVACEVSLMKEGVPELFVQIEGVAV 154

Query: 547 KLPFSSCYSLTMHDISEWKQEKN------------------------------KLSHAKK 576
                    L   DI+E K+ +                                L   K+
Sbjct: 155 ASGEECRIGLI--DITEHKRAEEVLWMAKEATEAAILAKETAKALRLEKEISESLRREKE 212

Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
            AE  +  K  FLA +SHE+RTP+T ++G  ++   +   P        Y      S N 
Sbjct: 213 AAESATRAKDQFLANMSHELRTPMTGVLGMLQLALEEELAPT----LRNYLGTAHSSANS 268

Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696
           +L I+ND+LD++KIE+GK+ +   P S    V+ A+ ++      K + I  S A  +P 
Sbjct: 269 LLQILNDILDMTKIEAGKIIIEEMPFSPRRCVTGAVDIITPEVRRKGLDIAISVAEEVPD 328

Query: 697 -ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-------EVILRVRDTGVGM 748
            ++ D   ++Q+ +N+++NA+ FT  G    ++   T+         E    V DTG+G+
Sbjct: 329 KLVGDQMRLRQVLINLIANAVKFTNEG---KVAVQVTAGGTNSDGKREYTFAVTDTGIGI 385

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
              + +     F Q+  S      GTGLGL + K +V+   G     S    G+      
Sbjct: 386 PEDKKDLLFHVFSQVDASHTRTYGGTGLGLAICKELVELMGGMIDFDSKEGVGSTFYFTI 445

Query: 809 PLYDT 813
            L + 
Sbjct: 446 SLREA 450


>gi|328911399|gb|AEB62995.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens
           LL3]
          Length = 739

 Score =  311 bits (797), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 94/737 (12%), Positives = 238/737 (32%), Gaps = 67/737 (9%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLW 150
              + + +E   + +   A  +I   + D    +  +  N  +   LK+ + W       
Sbjct: 51  EMKIVQANEAAARMMQIEAESLINRSVLDFLYSVPQEELNKAVKKFLKKGHLWKEVPIKL 110

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
               T     +        +++     +  F ++                ++ F  L + 
Sbjct: 111 DSGATKYIEFL--------AKDGIGEDYF-FVVMRDISSKKILEREFSMKEQLFKDLFDR 161

Query: 211 KKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
                 +  +                +           ++   ++    ++      ++ 
Sbjct: 162 AVDGIVLFDKDGGFIDANLSFCKSFEIGQNELSHLSLRHFTEGENNKHLKEIWDTLGKKG 221

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
               +      +  +   +    +   +              S+     + E    E  +
Sbjct: 222 KAKGELPVKLRSGEEKLFEFTITSNLISGFYMSIMRDITEKRSMELKLFKSEERFREIFE 281

Query: 328 KCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEI--------AGGLSTLLDAPKLSDN 378
                  ++   G +  AN S   + +      +E                +        
Sbjct: 282 NAMDAIVIWSDDGRIAKANESACRIFELPMDKLVERNLCSFIVDPQKKYKQIKKKYEKYG 341

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
              + ++   ++                 ++   +                         
Sbjct: 342 EIREEMLFQMANGQYKELEFTSKRTILEGQHLTIL---------------------RNVS 380

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
           D +  ++++    ++   +   + DG  + + +  I+  N   S++ G P E++      
Sbjct: 381 DRKRMEKELRESELKFRKVFNGSMDGKVLFDNQFRIIDANPLASRILGMPDEELRAYTVP 440

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM 558
             L             +I        ++              L    K+    +      
Sbjct: 441 DILSLFDIENAGVPARKIDLEG----MDNEIPFLLSSSDSRKLEFSFKRNIIQNMNLAIF 496

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            D++E K+ + +L  +  +         +  A ++HEIR P+TA+ GF ++++    G  
Sbjct: 497 KDVTEAKELEERLRKSDTLHVV-----GELAAGIAHEIRNPMTALKGFIQLLQGSIEG-- 549

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
               +  Y N I      +  I+ + L ++K ++    + +E   + + + +   L+   
Sbjct: 550 ---EHSLYFNVITSELKRIESIITEFLILAKPQA----ILYEEKDVTQIMKDTADLLNAQ 602

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738
           AN   + I  +   NIP I  +   +KQ+ +NIL NAI   P GG I ++   +  + ++
Sbjct: 603 ANLVNVQIHLNLTGNIPPIYCEPNQLKQVFINILKNAIEVMPGGGNIYVTIQPSDKDHIL 662

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           + ++D G GM+  +L++  +PF    +       GTGLGL ++  +++ + G+ ++ S  
Sbjct: 663 ISLQDEGTGMSEDKLKRLGEPFYTTKD------RGTGLGLMVSYKIIEEHQGRIHVESEE 716

Query: 799 AKGTLIEIIFPLYDTSH 815
            KGT+  +  P+   + 
Sbjct: 717 GKGTVFHLTLPIRQNTE 733



 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 52/137 (37%), Gaps = 3/137 (2%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +    +++ ++ +   I+  T D I I ++E  I+  N A +++     E ++ +    F
Sbjct: 21  KEENDRLKSDLHRYHVIMNNTLDAIFICHKEMKIVQANEAAARMMQIEAESLINRSVLDF 80

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
           L       +N  + + L       L K             +  + K       + + M D
Sbjct: 81  LYSVPQEELNKAVKKFLKKGH---LWKEVPIKLDSGATKYIEFLAKDGIGEDYFFVVMRD 137

Query: 561 ISEWKQEKNKLSHAKKI 577
           IS  K  + + S  +++
Sbjct: 138 ISSKKILEREFSMKEQL 154


>gi|302024080|ref|ZP_07249291.1| sensor histidine kinase [Streptococcus suis 05HAS68]
          Length = 449

 Score =  311 bits (797), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 90/404 (22%), Positives = 168/404 (41%), Gaps = 34/404 (8%)

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDT-RINKRKMEIEVMQLCSILEATSDGIAIINREG 472
            +         PE         +  +  R+    +E E  +L SIL   SDG+   +R G
Sbjct: 55  NYADVLDMRGSPEITDMANSLNDLSEVIRLTHDNLEQEKTRLTSILSYMSDGVIATDRIG 114

Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
            I+  N    K  G   +   +      L+ +    +   L +        T E +   +
Sbjct: 115 RIIMINDMAQKQLGLSSQKQEQYHLLEVLDLSDRYTLRDLLAQ--------TPEIVIDHT 166

Query: 533 TKEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
            + E+ L+LR     +   S       + +HD++E  +E+ +              +  F
Sbjct: 167 NENEEFLTLRANFATIRSESGLISGLVVVLHDMTEQAKEERE--------------RRLF 212

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
           ++ VSHE+RTPLT++  + E +     G L       +        N ++ ++ DLL +S
Sbjct: 213 VSNVSHELRTPLTSVKSYLEAL---DEGALTESVAPSFVKVSLDETNRMMRMITDLLSLS 269

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYAN---EKRILIRTSFANNIPRILADLRSVK 705
           +I++    +  E ++    V+  ++      N   +K   I   +  +   +  D   + 
Sbjct: 270 RIDNQVGQIDVELINFTAFVTFILNRFDQMKNTDSDKVYTIVRDYQISPIWVEIDTDKMT 329

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           Q+  NIL+NAI ++P GG I  S   T + ++I+ V D G+G+   +L +    F ++  
Sbjct: 330 QVLDNILNNAIKYSPDGGTITFSMKTTDS-QLIVSVSDEGLGIPKTDLPRIFDRFYRVDK 388

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           ++     GTGLGL +AK +V  + G  +  S    G+   I+ P
Sbjct: 389 ARSRAQGGTGLGLAIAKEIVKQHKGFIWAKSEYGHGSTFTIVLP 432


>gi|225571072|ref|ZP_03780089.1| hypothetical protein CLOHYLEM_07171 [Clostridium hylemonae DSM
           15053]
 gi|225160153|gb|EEG72772.1| hypothetical protein CLOHYLEM_07171 [Clostridium hylemonae DSM
           15053]
          Length = 1117

 Score =  311 bits (797), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 114/529 (21%), Positives = 194/529 (36%), Gaps = 40/529 (7%)

Query: 313 AYFDEGENLTPETVDKCPIPFFVYSHG---NLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
                         +  P    + S      L   N   L +  Y       +    +  
Sbjct: 313 RRLRNQAEYIGHLYNAIPEGIALISADAPYRLLQLNEEGLNILSYPHDAMSGVLE--NVQ 370

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
            +     + + +   M           +      + +       T    E+         
Sbjct: 371 FEELFHPEESKMLRQMFADVTGNDEKHTFESQMKKSDGS--FIWTAGIIERTLDEEGIPV 428

Query: 430 QNGIEPEDVDTRINKRKMEI----EVMQLCSILEATSDGIAIINRE---GIILSTNRAVS 482
                 +    +  + + E     E + L   +      I  +N        +   + + 
Sbjct: 429 LIAAFHDITAEKQKEVEAERVQLQERVTLVGAISNAYPVIVSVNLTRDLLSFIYVKQGL- 487

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE-------KITLGSTKE 535
            L     E    + F+       P  ++ Y        +++ L                +
Sbjct: 488 -LLHLGEETTYSELFSDITASVHPDHVDEYRRRFAPDRIKEILGSTKQEVFLEMRQKLSD 546

Query: 536 EKLLSLRIIIK----KLPFSSCYSLTMHDISEWKQEKNK----LSHAKKIAEKESSHKSD 587
                    I              L    + E + E+ +    L  A   A   +  KS 
Sbjct: 547 GNYHWTSTQIIYVDNPYSEDKLAILISRRVDEQRYEEEQQRQALQTALDNARAANEAKSK 606

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           FL+ +SH+IRTP+ AI+G +EV K          R  E  + I RSG+ +L ++ND+LD+
Sbjct: 607 FLSNMSHDIRTPMNAIVGMTEVAKAHLG---EQDRVRECLDKISRSGSHLLGLINDVLDM 663

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN-NIPRILADLRSVKQ 706
           S+IESGKM+L  EP +L E V+EA  LV+  A  K+I I          +++ D   ++Q
Sbjct: 664 SRIESGKMSLSAEPFNLAEMVTEAAELVRPQAENKQIHIDIHLYGLKNEKVIGDELRLRQ 723

Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSN-----EEVILRVRDTGVGMTNYELEKAMKPFG 761
           + +NILSNA+ +TP GG + +      +     +  I R  DTG+GMT   LEK   PF 
Sbjct: 724 VGVNILSNAVKYTPEGGSVEVEVRQAKSSRKGYQSFIFRCADTGIGMTQEFLEKLFLPFE 783

Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           +  +S   +  GTGLG+ + K ++D   G   + S P  G++  +  PL
Sbjct: 784 RAKDSTDSKVVGTGLGMAITKNIIDLMNGDIQVESEPGAGSVFTVTVPL 832


>gi|254519261|ref|ZP_05131317.1| multi-sensor signal transduction histidine kinase [Clostridium sp.
           7_2_43FAA]
 gi|226913010|gb|EEH98211.1| multi-sensor signal transduction histidine kinase [Clostridium sp.
           7_2_43FAA]
          Length = 568

 Score =  311 bits (797), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 85/363 (23%), Positives = 162/363 (44%), Gaps = 40/363 (11%)

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
             +L +ILE+   G+  ++ +  ++  N     LFG   EDI+ +  + ++         
Sbjct: 230 QNKLEAILESMESGVIAVDNKQKVMLINPYAKNLFGIK-EDIIGENISEYIIDYDILSFM 288

Query: 511 HYLT--EILSLDLRQTLEKITLGSTK---EEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
             +   E+  + L   + +           +K + +              +T+ DI++ K
Sbjct: 289 RNIPAIEMKEIKLIHPILRELRIKKAPIINDKKIPI-----------GVVITVLDITDIK 337

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + +              + +S F+A VSHE++TPLT+I GF+E +K         P   +
Sbjct: 338 RLE--------------NIRSQFVANVSHELKTPLTSIKGFAETLK----FVEDLPTRNK 379

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           + + ID+    + +++ND+L +S IE+    +  E  +  + + + I++V    N K+I 
Sbjct: 380 FLDIIDKEAERLTNLINDILILSNIENNH-KMKEEEFNPAKVIEDVINMVTPQMNSKQIE 438

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           I  S +N    +  D     Q+ LN++ NAI ++     I I T +  N+   + V D G
Sbjct: 439 INFS-SNGTNELNGDRDKFFQMILNLVENAIKYSNDKTLISIRT-YDINDYTYIEVEDNG 496

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+   +L +  + F ++  S      GTGLGL + K +     G+ ++ ST  KGT   
Sbjct: 497 IGIPKEDLPRIFERFYRVDKS--RAKGGTGLGLAIVKHIARMFNGEIFVKSTLNKGTKFT 554

Query: 806 IIF 808
           I  
Sbjct: 555 IKL 557


>gi|86607438|ref|YP_476201.1| sensory box histidine kinase/response regulator [Synechococcus sp.
            JA-3-3Ab]
 gi|86555980|gb|ABD00938.1| sensory box histidine kinase/response regulator [Synechococcus sp.
            JA-3-3Ab]
          Length = 1523

 Score =  311 bits (797), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 116/697 (16%), Positives = 225/697 (32%), Gaps = 68/697 (9%)

Query: 181  FGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH------L 234
            F I        +     K+     + + +       V   +  I                
Sbjct: 385  FLIRRETAEREEAERSLKQERDFTNAVIDTAGALVVVMDPEGRILRFNRAAEQLSGYSLA 444

Query: 235  RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL--PEQEDFHTINLNQYTKKQYFGTL 292
             +K ++         +D     + +  L    S      +  + T              L
Sbjct: 445  EVKGRLLWDLGLIPPEDVPGVKQAFEQLKGNHSLFLNRHENFWRTKQGALRLISWSNTAL 504

Query: 293  QNNSKES----FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPS 347
             N + E        +   +         E E    +  +        V + G+  Y N +
Sbjct: 505  INAAGEVEFVMGTGIDITDRKLAELALRESEERYRDLFENATDLIQSVDAEGHFLYVNRA 564

Query: 348  FLLLTKYKSVD-------DIEIAGGLST---LLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397
            +     Y           DI           L       +           +    +   
Sbjct: 565  WKETLGYDEAQVYQMTLFDILHPDCREHCQALFQKLLAGEKLERVETAFLTASGETVWVE 624

Query: 398  ARLHTIQWNR---------ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
              ++    +           N         E   Q         +  +  ++      +E
Sbjct: 625  GNVNCRFEDGVMVATRGIFRNITEQKKAAEELERQNRRAQLLANLSLKIRESLDIAEILE 684

Query: 449  IEVMQLCSILEATSDGIAIINREGIILSTN-----------------RAVSKLFGYPVED 491
              V ++ ++L+A    +     +G  + +N                     + +      
Sbjct: 685  TAVTEIQALLKADRVLVYRFQPDGSGIISNEKTQPGIPSLAGEVIEDPCFQEKYAQLYSQ 744

Query: 492  ILRKPFTVFLEQNTPSVMNHYLTEILSLD---LRQTLEKITLGS------TKEEKLLSLR 542
               +  +    +         L ++       +   LE+   G       +   +     
Sbjct: 745  GRVRVVSDVESEGLEPCYLELLQKMQVRANMVVPLFLEQQLWGLLLAHQCSGPRQWQPFE 804

Query: 543  III-KKLPFSSCYSLTMHDISEW-KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
            + +  +L      +LT   + E  ++   +L  A+K AE+ +  KS FLA +SHEIRTP+
Sbjct: 805  MELLSQLANQIGIALTQAALLERERKRSLELEQARKAAEQAAQAKSSFLATMSHEIRTPM 864

Query: 601  TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
             A++G + ++         N    ++   I  SG+ +L ++ND+LD SK+E G+M L   
Sbjct: 865  NAVLGMTGLLLETPL----NAEQRDFVETIRVSGDALLTLINDILDFSKLEVGEMELEIL 920

Query: 661  PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFT 719
               L   + E   L    A+ K + +       +PR +  D   ++QI  N++SNAI FT
Sbjct: 921  DFDLRSCLEEVADLFAPTAHAKGLELAVLVPPEVPRYLRGDASRLRQILNNLVSNAIKFT 980

Query: 720  PSGGQIIISTTHTSNE---EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
              G  +I +          ++ L VRDTG+G+      K  +PF Q+  S   +  GTGL
Sbjct: 981  HQGEVVIQAELMQETATHVQLRLSVRDTGIGIPKDAQTKLFQPFTQVDASTTRKYGGTGL 1040

Query: 777  GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
            GL + K + +   G+ ++ S   +G+   +   L   
Sbjct: 1041 GLAICKQLTELMGGRIFLESEEGRGSTFSLELTLERQ 1077



 Score =  127 bits (319), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 47/433 (10%), Positives = 110/433 (25%), Gaps = 30/433 (6%)

Query: 185 HVNRVDNDPRALGKRLDKKFSHLH--EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS 242
                            +    L      +       E       +     +R++ +   
Sbjct: 258 RYLSEYQASLEATSTHLRLLKELTADNPLQQERLKRLELLLEQRLRVIQDLIRLREQEGL 317

Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302
           L    A +          ++        E+         ++        L       F Y
Sbjct: 318 LATQEALESSEGPRLMEQIVELIRVLQQEENRLLQQRSQEFQFAWVRTNLIAFGGLIFTY 377

Query: 303 LSHR-----------NHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLL 350
           L                        +  + T   +D       V    G +   N +   
Sbjct: 378 LVLASVYFLIRRETAEREEAERSLKQERDFTNAVIDTAGALVVVMDPEGRILRFNRAAEQ 437

Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
           L+ Y   +          L+    +      +     + + +                  
Sbjct: 438 LSGYSLAEVKGRLLWDLGLIPPEDVPG--VKQAFEQLKGNHSLFLNRHENFWRTKQGA-L 494

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470
             +++      N   E     G   +  D ++ +  +     +   + E  +D I  ++ 
Sbjct: 495 RLISWSNTALINAAGEVEFVMGTGIDITDRKLAELALRESEERYRDLFENATDLIQSVDA 554

Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530
           EG  L  NRA  +  GY    + +      L  +          ++L+ +  + +   T 
Sbjct: 555 EGHFLYVNRAWKETLGYDEAQVYQMTLFDILHPDCREHCQALFQKLLAGEKLERV--ETA 612

Query: 531 GSTKEEKLLSLRIIIKKLPFSSCYSL---TMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
             T   + + +   +                 +I+E K+   +L        +  + ++ 
Sbjct: 613 FLTASGETVWVEGNVNCRFEDGVMVATRGIFRNITEQKKAAEEL--------ERQNRRAQ 664

Query: 588 FLARVSHEIRTPL 600
            LA +S +IR  L
Sbjct: 665 LLANLSLKIRESL 677



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/147 (11%), Positives = 39/147 (26%), Gaps = 7/147 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCD--VSDILHIDPNNHIGDLLKRQNT--WY 144
           +D  G +   +    +  G    ++ G  L D  +     +       + LK  ++    
Sbjct: 422 MDPEGRILRFNRAAEQLSGYSLAEVKGRLLWDLGLIPPEDVPGVKQAFEQLKGNHSLFLN 481

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
                W  +   L + I  +   + +   E     G GI              +  ++++
Sbjct: 482 RHENFWRTKQGALRL-ISWSNTALINAAGEVEFVMGTGI--DITDRKLAELALRESEERY 538

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPP 231
             L E           +          
Sbjct: 539 RDLFENATDLIQSVDAEGHFLYVNRAW 565



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/250 (12%), Positives = 71/250 (28%), Gaps = 10/250 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147
           +DA G+   ++    +T+G    ++  M L D+      +        LL  +     +T
Sbjct: 552 VDAEGHFLYVNRAWKETLGYDEAQVYQMTLFDILHPDCREHCQALFQKLLAGEKLERVET 611

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                 G  ++V  ++        +      RG  I              +R +++   L
Sbjct: 612 AFLTASGETVWVEGNVNC---RFEDGVMVATRG--IFRNITEQKKAAEELERQNRRAQLL 666

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
             +             + +  +    L   ++V            +   +  P + S   
Sbjct: 667 ANLSLKIRESLDIAEILETAVTEIQALLKADRVLVYRFQPDGSGIISNEKTQPGIPSLAG 726

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
            + E   F       Y++    G ++  S    E L       L         + P  ++
Sbjct: 727 EVIEDPCFQEKYAQLYSQ----GRVRVVSDVESEGLEPCYLELLQKMQVRANMVVPLFLE 782

Query: 328 KCPIPFFVYS 337
           +      +  
Sbjct: 783 QQLWGLLLAH 792


>gi|293394244|ref|ZP_06638544.1| sensor histidine kinase [Serratia odorifera DSM 4582]
 gi|291423222|gb|EFE96451.1| sensor histidine kinase [Serratia odorifera DSM 4582]
          Length = 779

 Score =  311 bits (797), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 87/436 (19%), Positives = 184/436 (42%), Gaps = 17/436 (3%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L            +L+    +    L        KA +    +  + ++ E
Sbjct: 81  EESRQRLARLVDKLEEMRHRDLQLNQQLKDNITQLNQEIADRIKAEEARLQV-MDKLKEE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
                + + ++  +   L S L+A+ D +   N +      NRA+  L G   + ++   
Sbjct: 140 MEQRELAQIELGQQSALLRSFLDASPDLVYYRNEDKEFSGCNRAMELLTGKSEKQLIGLT 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII--KKLPFSSCY 554
                EQ+    +     ++   ++  T E+  +     +    LR +    ++      
Sbjct: 200 PYDVYEQDIADKVIETDEKVFRHNVSLTYEQWLVYPDGRKACFELRKVPFYDRVGKRHGL 259

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+ ++ L +        S  K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 260 MGFGRDITERKRYQDALEN-------ASRDKTTFISTISHELRTPLNGIVGLSRILLDTE 312

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                +   ++Y   I  S   + +I ND++++ K+E  K+ L  +PV     +++  +L
Sbjct: 313 L----DDEQLKYLKTIHVSAITLGNIFNDIIEMDKLERRKVQLDNQPVDFTGFLADLENL 368

Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
             L A  K +         +P+ ++ D   ++QI  N++ NA+ FT  G QI++      
Sbjct: 369 SGLLAQPKGLQFVLDPQQPLPQQVITDGTRLRQILWNLIGNAVKFTQQG-QIVVRVRRDG 427

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ-IRGEGTGLGLPLAKAMVDANMGKF 792
            E+++  V D+G+G+   E +K    + Q+ + +      GTG+GL ++K +  +  G  
Sbjct: 428 QEKLVFEVEDSGMGIPQDEQDKIFAMYYQVKDQRGGRPATGTGIGLAVSKRLAQSMGGDI 487

Query: 793 YIFSTPAKGTLIEIIF 808
            + S P  G+   +  
Sbjct: 488 TVNSRPGHGSCFTLTI 503



 Score = 40.4 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/124 (14%), Positives = 36/124 (29%), Gaps = 5/124 (4%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN-TWYGKTTLWPIE 153
               +  +    G    ++IG+   DV +    D      + + R N +   +  L   +
Sbjct: 177 FSGCNRAMELLTGKSEKQLIGLTPYDVYEQDIADKVIETDEKVFRHNVSLTYEQWLVYPD 236

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
           G       +L  +P Y R  +  G  GFG           +   +   +  +        
Sbjct: 237 GRKACF--ELRKVPFYDRVGKRHGLMGFG--RDITERKRYQDALENASRDKTTFISTISH 292

Query: 214 HSSV 217
               
Sbjct: 293 ELRT 296


>gi|218781131|ref|YP_002432449.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218762515|gb|ACL04981.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 796

 Score =  311 bits (797), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 95/578 (16%), Positives = 197/578 (34%), Gaps = 50/578 (8%)

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
               S       H       +       ++N  +     ++  + P      D       
Sbjct: 103 GGAGSTSLPVVIHRQGAEGVSCSARLQAVRN-GEGLKSLVALLSDPPPWRQDDMERLRLK 161

Query: 324 ETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
             V          Y+ G  FY N +F  +  Y S++++               ++     
Sbjct: 162 AAVRGSKDAVGMAYADGRHFYHNEAFSRMFGY-SLEELRNKS------PQSLYNNQEQAV 214

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
            V     +    +    +   +      + +        +     +   G   +  D+++
Sbjct: 215 EVFKSIQNGEFWSGEVEM---RTKNGQIIHVDLQADGIMDAEDRVIALIGHHTDLTDSKM 271

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
              ++     +    +E    G+ I N +G I+  N+ + ++ GY + D     F   L 
Sbjct: 272 TVLQLAQSEAKYKDFVENAPIGMLITNLDGEIVYANKKIEEVTGYDLRDWKNSSFLPILY 331

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--------CY 554
                VM+    + L+    +    +    T   ++  LR I + +   +         +
Sbjct: 332 PEDLPVMHQQRNQALTTRK-EVKPYVLRVVTASGEIRWLRTIPQLVFSDASNSSGEIVGF 390

Query: 555 SLTMHDISEWKQE--KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
              + DI+  K    + +    + +  ++          ++H+    L  I+G++E++K+
Sbjct: 391 QNFLEDITPTKLAIEEKERLEKQLVQSRKMEAIGTMAGGIAHDFNNILYPILGYAEMLKD 450

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
               P   P   +    I++S     D+V  +L  S+           PV++   + + +
Sbjct: 451 D-LTPESIPY--KNVEEIEKSAYRARDLVQQILSFSRP----TEQEVVPVAVQSILEDVL 503

Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT-PSGGQIIISTTH 731
            +++       I I    +     ILAD   + Q+ LN+ +NA H     GG + IS   
Sbjct: 504 RMLRAVLPS-TIQINPKISRKCRMILADPTQIHQVLLNLCTNAYHAMLDQGGLLYISLVE 562

Query: 732 T--------------SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
                            +   L VRDTG G++   +E+  +P+     +    GEGTGLG
Sbjct: 563 EHINPSQGESVLPIAPGDYARLTVRDTGCGISKDVIERIFEPYFTTKIA----GEGTGLG 618

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
           L    A+V    G   + S   KG+   +  P+   + 
Sbjct: 619 LASVLAIVQKLKGHISVESKVGKGSAFNVYLPIIPITQ 656



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/430 (10%), Positives = 108/430 (25%), Gaps = 46/430 (10%)

Query: 49  FEQSNFTDQNQESVSNTNYLDSENTFVF-------DPIPRTVRFTWNIDAHG-YLKEISE 100
            E+++ T       S    L+     +        D     + +   ID     +  +++
Sbjct: 5   PEKNDKTAYEPPEPSGPRSLEFGEKGLLHALESHCDIDNIPMAYV-EIDLEKICITRVNQ 63

Query: 101 ELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH---IGDLLKRQNTWYGKTTLWPIEGTNL 157
              +  G    +++G    D+  +  ID N+    +               +   +G   
Sbjct: 64  LFCRLSGFSESQLVGET--DLRSLFSIDSNSLGLFLEKTKHGGAGSTSLPVVIHRQGAEG 121

Query: 158 YVPIDLAALPIYSRNREFSGFRGFGIV-------HVNRVDNDPRALGKRLDKKFSHLHEI 210
                ++        R   G +    +         + ++        R  K    +   
Sbjct: 122 -----VSCSARLQAVRNGEGLKSLVALLSDPPPWRQDDMERLRLKAAVRGSKDAVGMAYA 176

Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270
              H    +    +F         +    + +  E        ++               
Sbjct: 177 DGRHFYHNEAFSRMFGYSLEELRNKSPQSLYNNQEQAVEVFKSIQ---------NGEFWS 227

Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA----YFDEGENLTPETV 326
            + +  T N            + +        + H    + S        + E    + V
Sbjct: 228 GEVEMRTKNGQIIHVDLQADGIMDAEDRVIALIGHHTDLTDSKMTVLQLAQSEAKYKDFV 287

Query: 327 DKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
           +  PI   + +  G + YAN     +T Y  + D + +  L  L        +      +
Sbjct: 288 ENAPIGMLITNLDGEIVYANKKIEEVTGY-DLRDWKNSSFLPILYPEDLPVMHQQRNQAL 346

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
             R +         +  +         +  IP    +    +  +       ++     +
Sbjct: 347 TTRKE-----VKPYVLRVVTASGEIRWLRTIPQLVFSDASNSSGEIVGFQNFLEDITPTK 401

Query: 446 KMEIEVMQLC 455
               E  +L 
Sbjct: 402 LAIEEKERLE 411


>gi|167621591|ref|YP_001672099.1| multi-sensor hybrid histidine kinase [Caulobacter sp. K31]
 gi|167351714|gb|ABZ74440.1| multi-sensor hybrid histidine kinase [Caulobacter sp. K31]
          Length = 903

 Score =  311 bits (797), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 108/596 (18%), Positives = 211/596 (35%), Gaps = 30/596 (5%)

Query: 237 KNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS 296
             +  +  +  A    +L      +  +  +++    D                 +    
Sbjct: 168 VARPGAGLKQQAAGGGLLSLAIVGMHFTGMTAVTIVPDLSIAVPASLMSDPVMAAVAVAV 227

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYK 355
                  +       +A  +       E +D  P     Y     L   N  +  L +  
Sbjct: 228 TALILITAIGGVALDAASRNGNLRRLREALDVMPEGLAFYDANDRLVAWNTQYDDLCRTS 287

Query: 356 SVDDIEIAGGLSTL---LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
               +        L   L      +    +   L   +       A   T Q      L 
Sbjct: 288 GAILVAGMPFSDLLESSLVHGVYPEAVGRETEWLAERNAARRD-EAPSLTQQTAGGRWLR 346

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI-----AI 467
           +T            ++    ++  +      + K E +  +        ++G+       
Sbjct: 347 ITERRTGDGGTVSVSVDITDLKRTEAAMAQARDKAEEQARRAE-----VAEGVAGLGNWR 401

Query: 468 INREGIILSTNRAVSKLFGY-PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
           ++     ++ +  +  +FG      +  +     +  +    +   L   L+    +  E
Sbjct: 402 VDARTRDVTWSTQMYHIFGLASDAPLDLEALIGMIHPDDAEAVAARLKRQLATG--EVDE 459

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSC-----YSLTMHDISEWKQEKNKLSHAKKIAEKE 581
                  +    +       +              TM D+++ K  + +L  A+  AE  
Sbjct: 460 NSISRIVRANGEVRYLARNSRAEHGPGGEVIAMIGTMVDVTDQKLLEARLRLARAEAEAA 519

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
           +  K++FLA +SHE+RTPLT+IIGF+ +   Q            Y   +  +   +L  V
Sbjct: 520 AGVKAEFLANMSHELRTPLTSIIGFTSLAAEQ---SDLTDLTRTYVERVGDASRALLCTV 576

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS--FANNIPRILA 699
           ND+LD SK+E+G+++   +P SL +     + L    A  K + +      A++   I  
Sbjct: 577 NDILDFSKLEAGQVSFQVQPASLAKLSRATLDLFTPQAGAKDLNLTLDGEAADDDLIIAV 636

Query: 700 DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI-LRVRDTGVGMTNYELEKAMK 758
           D   ++QI LN++ NA+ FT +GG + + T +    EV+ + V DTG G+   + ++  K
Sbjct: 637 DPDRIRQILLNLVGNAVKFT-TGGSVTLRTRYDRAAEVLSVDVIDTGEGVAPDKQDRLFK 695

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
            F Q+  S      GTGLGL + K +V+A  G+  + S   +G+      P   +S
Sbjct: 696 RFSQVDGSLTRVQGGTGLGLAICKGLVEAMGGEIGVESRMGEGSRFWFKVPAPLSS 751


>gi|302879057|ref|YP_003847621.1| multi-sensor signal transduction histidine kinase [Gallionella
           capsiferriformans ES-2]
 gi|302581846|gb|ADL55857.1| multi-sensor signal transduction histidine kinase [Gallionella
           capsiferriformans ES-2]
          Length = 708

 Score =  311 bits (797), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 79/359 (22%), Positives = 152/359 (42%), Gaps = 28/359 (7%)

Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
           + I + +G+I   N    ++ GY  ++++ +   +    + P      + + +     + 
Sbjct: 288 VTICSVDGLITYCNDKFVEVSGYSHDELIGQDHKIMNSGHHPKGFFKEMYDTIYRG--EV 345

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEK 580
                    +E   +     I            Y     DI+E K+ +         A  
Sbjct: 346 WHAEVCNLAREGHAIWFDTTIAAFMGDDGKPREYMAVRTDITEQKRIEE-------AAHA 398

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            S  KS+FLA +SHEIRTP+  ++G  ++++  +     N         I  S   +L+I
Sbjct: 399 ASRAKSEFLANMSHEIRTPMNGVLGMVDILQETKL----NSMQHRLLGTIQHSSQALLNI 454

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILA 699
           +ND+LD SKIE+G++++            E + L+   A  K + +    +  +P  I +
Sbjct: 455 LNDILDYSKIEAGRLDIECIATCPRVVAEEIVQLMISQA--KSVALCVFVSPELPLWIAS 512

Query: 700 DLRSVKQIALNILSNAIHFT----PSGGQIIISTT--HTSNEE--VILRVRDTGVGMTNY 751
           D   ++QI LN+L NAI FT       GQ+ ++       +    +   + D G+G+   
Sbjct: 513 DPSRLRQILLNLLGNAIKFTSGVQGRAGQVSLNVRPCELDDGHAGIRFDIADNGIGIAPE 572

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            ++   +PF Q   S   +  G+GLGL +++ +     G+  + S    G++  +  PL
Sbjct: 573 VIDTLFQPFAQADASTARKFGGSGLGLSISRRLAGLMGGEIKLSSRIGAGSIFTLELPL 631



 Score = 40.8 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/129 (9%), Positives = 31/129 (24%), Gaps = 9/129 (6%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD---LLKRQNTWYGKTT 148
            G +   +++  +  G    ++IG             P     +    + R   W+ +  
Sbjct: 294 DGLITYCNDKFVEVSGYSHDELIGQDHK--IMNSGHHPKGFFKEMYDTIYRGEVWHAEVC 351

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               EG  ++    +AA      + +   +    +                  +  S   
Sbjct: 352 NLAREGHAIWFDTTIAA--FMGDDGKPREYM--AVRTDITEQKRIEEAAHAASRAKSEFL 407

Query: 209 EIKKGHSSV 217
                    
Sbjct: 408 ANMSHEIRT 416


>gi|256829363|ref|YP_003158091.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256578539|gb|ACU89675.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 788

 Score =  311 bits (797), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 91/452 (20%), Positives = 177/452 (39%), Gaps = 23/452 (5%)

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
             P L  + A   +               L       E S     +     +   +   Q
Sbjct: 197 LDPVLDLSRAATEISRGDWQGLPEP----LARKDEIGELSRNFVAMARRLRDSQADLTRQ 252

Query: 431 NGIEPE--------DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
                E          +    +  +         I +++   +  ++   ++   NR   
Sbjct: 253 AASLRESNIHLEAQITERVRVEHDLRKATTSFMGIFDSSPSVLIAVDCGCVVAHWNRTAR 312

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
              G   E ++  P    L     + +   +   +      +L + +    +E + + + 
Sbjct: 313 TWVGLEPEQVIGLPLEQALP--QLAWLVDTVRRSMDEATTLSLTRQSYEQAEERRTVDIL 370

Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
           +            + + D++   + +  L  AKK AE  +  KS+FLA +SHE+RTP + 
Sbjct: 371 VSPLISDEVYGAVIRLDDVTAQIRMEEGLIAAKKSAESANEAKSEFLANMSHELRTPFSG 430

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           I+G   +++    G   +     Y     ++ +    ++ DLLDIS+IE+GK+++H +  
Sbjct: 431 IMGMMRLLQ----GTGLDDEQRRYVCLAIKASDRFTRLLTDLLDISRIEAGKLDIHEQEF 486

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPS 721
           S  +     + +  L + EK I +      ++P R++ D   V+QI  N++ NAI FT  
Sbjct: 487 STSDLHDSVMEIFALASQEKGISLEFFIDPSVPARLVGDEMRVRQILFNLVGNAIKFTEK 546

Query: 722 G----GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
           G      I++S    ++  V+  V DTG+G+    L      F Q+  +     +G GLG
Sbjct: 547 GCVCVEIILLSPVKGADLRVLFTVSDTGIGIPVDMLSGIFGSFVQVDGASSRAFQGAGLG 606

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           L + K +V    G+ +  S   +GT + +  P
Sbjct: 607 LAIVKRLVKLMGGQIFADSIEGEGTNMHVELP 638


>gi|115374744|ref|ZP_01462020.1| PAS/PAC Sensor Hybrid Histidine Kinase [Stigmatella aurantiaca
           DW4/3-1]
 gi|115368221|gb|EAU67180.1| PAS/PAC Sensor Hybrid Histidine Kinase [Stigmatella aurantiaca
           DW4/3-1]
          Length = 641

 Score =  311 bits (797), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 100/646 (15%), Positives = 210/646 (32%), Gaps = 42/646 (6%)

Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD 251
           D  A    +     H+  + K    +     +  + Q     +  + +         H  
Sbjct: 2   DAVADAVLVCDGQEHILHLNKAAELLLGWTREELAGQPFSVLVPQRIRTWGGVPLTQHLL 61

Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
           D   + +   +          E      +     +++   +           +       
Sbjct: 62  DRNASRQGRPVLVPLRHRNGPEVVLEAVIGSTKAREHERIVLTLRHIPEVPDATTEPLEQ 121

Query: 312 SAYFDE--------------GENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKS 356
                                E L     +  P+  F + +   +   N  F  +     
Sbjct: 122 GLCLYPWQHAHTGLAHMPTLAERLYQLIFEHAPLGLFHFGNPPFIIACNDCFAEILGSTR 181

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
                        L    L      + +   R+      A    H           +   
Sbjct: 182 -----------QRLLGLNLLTLRDTRLMDCVRATLLGKHARYEGHYTSVTTGKVTPVRVH 230

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476
                ++    +   GI  +       + +   ++    ++L     G+A  +     + 
Sbjct: 231 FAPFFDEQERVVGGVGIVEDITSQHRMEEERATQLALASTLLRTAPIGMAFFDTRLRFVH 290

Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR-QTLEKITLGSTKE 535
            N A++   G P E  L +     L  +    +  +L  +L      + LE         
Sbjct: 291 INDALATATGQPPEAHLGRSLPAML-GSGGLHLEQFLRHVLETGQPLERLELSAQELGLA 349

Query: 536 EKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
              L   + I  +       L     + + +  K  + + S   + A++    + DFL  
Sbjct: 350 GPWLYWTLSIYPVRAVDGRILGIGSVVENTTGTKLAEQERSRLLREAQEAVRVRDDFLTI 409

Query: 592 VSHEIRTPLTAIIGFSEVIKN--QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
            SHE++TPLT +      ++   +R  P+         ++  +    +  ++NDLLD S+
Sbjct: 410 ASHELKTPLTPLSLRLATLERKLERGEPVDPAS----LHHARQHLTRLTTLINDLLDTSR 465

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709
           IESG + LH +P  LD  +   I + +   + +   I          +L D   ++Q+  
Sbjct: 466 IESGGLALHPQPTRLDVLIEHVIHVTETLHDARD-RITFHLPVRPIEVLGDPYRLEQVIS 524

Query: 710 NILSNAIHFTPSGGQIIISTTHTSNEEVIL-RVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
           N+L NA+ ++P GG I +S    +  +V+L  V D G+G+ + + +   + + +  N   
Sbjct: 525 NLLENALKYSPDGGTIRVSL--EARGDVVLMTVSDPGIGIPSDQQQHLFERYFRARNVST 582

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
               G GLGL + + +V  + G  ++ S   +G+   +  P    S
Sbjct: 583 HAYGGLGLGLYICRDIVARHGGSIWVESEVGRGSTFYVALPTLQAS 628



 Score = 65.0 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 29/277 (10%), Positives = 72/277 (25%), Gaps = 23/277 (8%)

Query: 326 VDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGG--------------LSTLL 370
           +D       V     ++ + N +  LL  +   +                     L+  L
Sbjct: 1   MDAVADAVLVCDGQEHILHLNKAAELLLGWTREELAGQPFSVLVPQRIRTWGGVPLTQHL 60

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK-ANQFPENMP 429
                S       V L   +   +   A + + +      + +T     +  +   E + 
Sbjct: 61  LDRNASRQGRPVLVPLRHRNGPEVVLEAVIGSTKAREHERIVLTLRHIPEVPDATTEPLE 120

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQL-CSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
           Q                M     +L   I E    G+        I++ N   +++ G  
Sbjct: 121 QGLCLYPWQHAHTGLAHMPTLAERLYQLIFEHAPLGLFHFGNPPFIIACNDCFAEILGST 180

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            +    +   + L     + +   +   L     +     T  +T +   + +       
Sbjct: 181 RQ----RLLGLNLLTLRDTRLMDCVRATLLGKHARYEGHYTSVTTGKVTPVRVHFAPFFD 236

Query: 549 PFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
                      + DI+   + + + +    +A     
Sbjct: 237 EQERVVGGVGIVEDITSQHRMEEERATQLALASTLLR 273



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/338 (9%), Positives = 76/338 (22%), Gaps = 31/338 (9%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D       I++ L    G      +G  L  +     +     +  +L+           
Sbjct: 283 DTRLRFVHINDALATATGQPPEAHLGRSLPAMLGSGGLHLEQFLRHVLETGQPLERLELS 342

Query: 150 WPIEG-TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               G    ++   L+  P+ + +    G     +V              RL ++     
Sbjct: 343 AQELGLAGPWLYWTLSIYPVRAVDGRILGIG--SVVENTTGTKLAEQERSRLLREAQEAV 400

Query: 209 EIKKGHSSVEKEKYDI----FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY----- 259
            ++    ++   +        S +      +++           H    L          
Sbjct: 401 RVRDDFLTIASHELKTPLTPLSLRLATLERKLERGEPVDPASLHHARQHLTRLTTLINDL 460

Query: 260 -PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
                 E   L        +++          TL +       +L  R    L   +   
Sbjct: 461 LDTSRIESGGLALHPQPTRLDVLIEHVIHVTETLHDARDRITFHLPVRPIEVLGDPYRLE 520

Query: 319 E---NLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
           +   NL    +   P    +     +       ++L           +     L +    
Sbjct: 521 QVISNLLENALKYSPDGGTI----RVSLEARGDVVLMTVSDPGIGIPSDQQQHLFERYFR 576

Query: 376 SDNNAIKP-----------VMLYRSDRTCIAASARLHT 402
           + N +                +       I   + +  
Sbjct: 577 ARNVSTHAYGGLGLGLYICRDIVARHGGSIWVESEVGR 614



 Score = 47.7 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 35/352 (9%), Positives = 84/352 (23%), Gaps = 23/352 (6%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEG 154
           +   ++   + +G+   +++G+ L  + D   +D       LL +   + G    +    
Sbjct: 166 IIACNDCFAEILGSTRQRLLGLNLLTLRDTRLMD--CVRATLLGKHARYEG---HYTSVT 220

Query: 155 TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214
           T    P+ +   P +       G  G GIV      +             S L       
Sbjct: 221 TGKVTPVRVHFAPFFDEQERVVG--GVGIVEDITSQHRMEEERATQLALASTLLRTAPIG 278

Query: 215 SSVEKEKYDIFSQQS----PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270
            +    +                    +   SL          L+     +L + +    
Sbjct: 279 MAFFDTRLRFVHINDALATATGQPPEAHLGRSLPAMLGSGGLHLEQFLRHVLETGQPLER 338

Query: 271 EQEDFHTINLNQYTKKQYFG--TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
            +     + L             ++          S   + + +   ++  +     + +
Sbjct: 339 LELSAQELGLAGPWLYWTLSIYPVRAVDGRILGIGSVVENTTGTKLAEQERSR---LLRE 395

Query: 329 CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388
                 V       +   +   L    +   + +A     L     +   +         
Sbjct: 396 AQEAVRVRDD----FLTIASHELKTPLTPLSLRLATLERKLERGEPVDPASLHHARQHLT 451

Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
              T I        I+      LA+   P          +       +  D 
Sbjct: 452 RLTTLINDLLDTSRIESGG---LALHPQPTRLDVLIEHVIHVTETLHDARDR 500


>gi|303243631|ref|ZP_07329972.1| integral membrane sensor signal transduction histidine kinase
           [Methanothermococcus okinawensis IH1]
 gi|302485873|gb|EFL48796.1| integral membrane sensor signal transduction histidine kinase
           [Methanothermococcus okinawensis IH1]
          Length = 650

 Score =  311 bits (797), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 66/247 (26%), Positives = 133/247 (53%), Gaps = 4/247 (1%)

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            K++  +L  +    ++    KSD +A VSHE+RTPLT+I G+ E++ +   G +     
Sbjct: 407 LKKQAEELEKSYNELKELDKLKSDIVAIVSHELRTPLTSIKGYVELVLDGTMGAIT-ESQ 465

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            +     +++ + +  +++++LD+SKIE G++ +H E ++L E V   +  ++  A+EK 
Sbjct: 466 KKCLEIANKNIDRLKRLIDNMLDLSKIEHGELEMHMEEINLKELVENVVDTLKPLADEKN 525

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
           I I     + I  +  D   + Q+  N++ NAI F+P  G++ I         V +++ D
Sbjct: 526 INIIYKINDII--MKGDKDRITQVLTNLIENAIKFSPVNGKVEIQ-ALKEGNSVHIKIID 582

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
            G G+   +L++    F Q+ + ++    G+GLGL + K++++ + G  ++ S    G++
Sbjct: 583 NGPGIPKKDLDRIFDRFYQVDSPEKRIKGGSGLGLAVCKSIIETHGGTIWVESKLGSGSV 642

Query: 804 IEIIFPL 810
             II P+
Sbjct: 643 FHIIIPI 649


>gi|254445977|ref|ZP_05059453.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
 gi|198260285|gb|EDY84593.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
          Length = 1028

 Score =  311 bits (797), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 125/812 (15%), Positives = 247/812 (30%), Gaps = 99/812 (12%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH----IGDLLKRQNTW- 143
            D  G +  +++   +  G    +  G  L +V  I++          +  +L       
Sbjct: 92  TDLEGRVTLMNDVAVEMTGWSREEAYGQPLAEVFHIVNTKSRERCANPVELVLSSGKIVG 151

Query: 144 -YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
               T+L    G   +  I  +  PI     +  G        V        A+ K  ++
Sbjct: 152 LANHTSLLSKSGKEYF--IADSGAPIRDDAGDLRGVVLV-FSDVTEAYRLREAIEKSEER 208

Query: 203 KFSHLHEIKKGHSSVEKEKY------DIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256
               L   ++G   +            ++      P        S L   +     ++  
Sbjct: 209 LQLALAATQEGVWELNNVTGTIFVSPRVYEIVGLEPDENEVKAESWLELIHPDDSKMVSE 268

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN-----NSKESFEYLSHRNHPSL 311
               L          +      +      +     ++      + +              
Sbjct: 269 RVRDLFAGTSVVGEWEYRVMHADGRYRWVRSRTKGVETKDGGHSYRFVGVLEDITESKEA 328

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYSHGNLFY-ANPSFLLLTKYKSVDDIEIAGGLSTLL 370
               +E +       +   I  +           +P    L     +    +A G   L 
Sbjct: 329 HLALEESQLRLRSAQEAGGIGVYEIDLQTQEITVSPELGKLFGRDKL-VFPLAEGKGHL- 386

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
                 D+       +  +             I      +  +        +   E    
Sbjct: 387 ----HPDDRDWVEAEMAEAMAGESEYCLEYRMIHGETNEARWVEVHGGISRDPSGEPRKT 442

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSD-----------------GI-AIINREG 472
            G   +  D  +++ ++      L S+L A  +                  +  +++  G
Sbjct: 443 TGTIVDITDRVLDRERLLS----LNSVLNAIREVNQLMTRERDAQVLIEKAVNILVDTSG 498

Query: 473 IILST--------NR------AVSK--------LFG------YPVEDILRKPFTVFLEQN 504
            + +         NR                  L G           +    F       
Sbjct: 499 FVTAWIYLCDSVGNRKGFIGAGFEDSQGDLEDKLIGENGPYILESSLVEGGIFAAPFPPP 558

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS-LTMHDIS- 562
                   + + ++      +     G        S+   +           L   DIS 
Sbjct: 559 DRPKGIPVVKDSVAPGKILVVALSFEGVDYGYFGCSVPASLADDLEERRLFKLVSRDISY 618

Query: 563 ---------EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
                    E K   ++L  AK+ AE+ ++ K DFLA +SHE+RTPL  I+G++ +++ +
Sbjct: 619 ALHSLAMEAERKLALSELLAAKEEAERANAAKDDFLAVMSHEMRTPLNPIMGYASILQER 678

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
             G   +     Y   I  S   +L +++DLLD  ++  G +   +  V L     +A+ 
Sbjct: 679 FPGGEEHD----YLGRIIGSSKRLLTLIDDLLDYVRVGEGAVKPVWSSVDLVALCVQAVE 734

Query: 674 LVQLYANEKRILIRTSFANNIPR-----ILADLRSVKQIALNILSNAIHFTPSGG-QIII 727
             +  A +  +        ++P      +  D   + +I  N+LSNA  +T  G   + +
Sbjct: 735 DSRSLARDLAVSFVNGPRGSLPMSEGTLVRCDGTMLLRIIDNLLSNAFKYTKQGSVTLEL 794

Query: 728 STTHTSNEE-VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
           S   + + E V + V DTG+G+      +  +PF Q  +S   + EG GLGL + K + +
Sbjct: 795 SEGRSEDGEIVRIDVVDTGIGIDLEATPRIFEPFAQADSSYTRQFEGAGLGLAICKQLAE 854

Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
           A  G+  I S   KG+   +I P      P +
Sbjct: 855 ALGGRIEIESELGKGSRFSLILPGRYVEAPEE 886



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 18/141 (12%), Positives = 44/141 (31%), Gaps = 7/141 (4%)

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ---NTPS 507
             Q    L +  D +   + EG +   N    ++ G+  E+   +P           +  
Sbjct: 75  EEQFRITLSSIGDAVMATDLEGRVTLMNDVAVEMTGWSREEAYGQPLAEVFHIVNTKSRE 134

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISE 563
              + +  +LS      L   T   +K  K   +      +           L   D++E
Sbjct: 135 RCANPVELVLSSGKIVGLANHTSLLSKSGKEYFIADSGAPIRDDAGDLRGVVLVFSDVTE 194

Query: 564 WKQEKNKLSHAKKIAEKESSH 584
             + +  +  +++  +   + 
Sbjct: 195 AYRLREAIEKSEERLQLALAA 215


>gi|226947053|ref|YP_002802126.1| Periplasmic hybrid histidine protein kinase, two-component
           [Azotobacter vinelandii DJ]
 gi|226721980|gb|ACO81151.1| Periplasmic hybrid histidine protein kinase, two-component
           [Azotobacter vinelandii DJ]
          Length = 1030

 Score =  311 bits (797), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 104/460 (22%), Positives = 176/460 (38%), Gaps = 15/460 (3%)

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE-NSLAMTF 415
           +  +    G        +  +       +        +AA       Q +     +A T 
Sbjct: 57  LQALAHGVGSPATTGDGRDPEAFQAGEDIARGKALERLAARLERLDGQVDSAMRIVAATL 116

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
           +P      F  +       P D      ++    E      + ++    + + +RE   +
Sbjct: 117 LPGLLLAAFALHGRHRRRSPRDQPRTPPEQAGSDESELQRVLFDSIPFPLFVKDREARYI 176

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
             NRA    F    E++  K    FLE        +       L               +
Sbjct: 177 RFNRAFLNNFRVRAEELTGKTILDFLELPAEERSRYQAASERLLREGGLFSTERRIRYAD 236

Query: 536 EKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
            +       +   P            + DIS  K  +  L+ AK++AE+ +  KSDFLA 
Sbjct: 237 GREHPSIYTLAGYPGGDGRPAGLLGMLIDISAQKASERALAEAKELAEEATRMKSDFLAN 296

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           +SHEIRTP+  I+G +++  +       + R   +      +   +L I+ND+LD SKIE
Sbjct: 297 MSHEIRTPMNVIMGMTQLALDSGL----DERQRNFVEKAHDAARSLLGIINDILDFSKIE 352

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALN 710
           +GKM        L+        L  L A EK + +    A ++P  ++ D   + Q+  N
Sbjct: 353 AGKMRFEQVDFQLESVTDHLADLSVLKAQEKGLELLFDIATDVPTALIGDPLRLGQVLSN 412

Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
           +L NAI FT  G +I +       +E    +   VRDTG+G+   +  K  + F Q  +S
Sbjct: 413 LLDNAIKFTSRG-EITLRIRKECEDERGVRLRFEVRDTGIGLNETQRRKLFRAFTQADSS 471

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
              +  GTGLGL + K +V    G+  + S+P  G+    
Sbjct: 472 TSRQYGGTGLGLAICKHLVAMMDGEIGVDSSPGVGSTFHF 511



 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 51/493 (10%), Positives = 116/493 (23%), Gaps = 47/493 (9%)

Query: 58  NQESVSNTNYLDSENTFV---FDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI 114
           +Q           E+      FD IP  + F    D        +          A ++ 
Sbjct: 138 DQPRTPPEQAGSDESELQRVLFDSIPFPL-FV--KDREARYIRFNRAFLNNFRVRAEELT 194

Query: 115 GMR---LCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSR 171
           G       ++              LL+    +  +  +   +G        LA  P    
Sbjct: 195 GKTILDFLELPAEERSRYQAASERLLREGGLFSTERRIRYADGREHPSIYTLAGYP--GG 252

Query: 172 NREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231
           +   +G  G  I                  +       +K    +    +         P
Sbjct: 253 DGRPAGLLGMLI--DISAQKASERALAEAKELAEEATRMKSDFLANMSHEIRT------P 304

Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291
            ++ M     +L      +      + +    S    + +  DF  I   +   +Q    
Sbjct: 305 MNVIMGMTQLALDSGLDERQRNFVEKAHDAARSLLGIINDILDFSKIEAGKMRFEQVDFQ 364

Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY--SHGNL---FYANP 346
           L++          H    S+    ++G  L  +     P          G +      N 
Sbjct: 365 LES-------VTDHLADLSVLKAQEKGLELLFDIATDVPTALIGDPLRLGQVLSNLLDNA 417

Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
                    ++   +       +    ++ D          R         A   T +  
Sbjct: 418 IKFTSRGEITLRIRKECEDERGVRLRFEVRDTGIGLNETQRRKLFRAFT-QADSSTSRQY 476

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG-- 464
               L +       A    E    +            + + +    +L +  ++      
Sbjct: 477 GGTGLGLAICKHLVAMMDGEIGVDSSPGVGSTFHFDARFERQANQRELLA--DSADLLGM 534

Query: 465 -IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
            + +++        N +  ++F      +    F V    N P  +          +  +
Sbjct: 535 RVLVVDD-------NASALEIF---AGMLSALRFAVTTADNAPQAIRLLERAQQEDNPYR 584

Query: 524 TLEKITLGSTKEE 536
            +    L    + 
Sbjct: 585 LVIMDWLMPGMDG 597


>gi|163848580|ref|YP_001636624.1| histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|222526515|ref|YP_002570986.1| GAF sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
 gi|163669869|gb|ABY36235.1| Histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|222450394|gb|ACM54660.1| GAF sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
          Length = 726

 Score =  311 bits (797), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 97/605 (16%), Positives = 205/605 (33%), Gaps = 47/605 (7%)

Query: 238 NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297
           + +   T   +   + LK      +  E + LP+                   +L+    
Sbjct: 135 DDLRRFTGRISELIEALKPLLAAAIAQEGARLPQLPTPRFAGETPIGLTLTP-SLRQKMI 193

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYAN-PSFLLLTKYKS 356
              E L                 L     +   +    Y    L       +      ++
Sbjct: 194 ALNEQLDRTIDLHELTGVILRRALEGSGAEAGAVALVDYDKRELVLHLYEGYEAERSRRA 253

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC---IAASARLH-TIQWNRENSLA 412
           +  +        +  A +         V     +      +   A L   I  +      
Sbjct: 254 LPALPRQRWSWEIGLAGQAVQMRRPLLVRDAGREPGLPNAMPFLAELAAPIIVDDRVLAV 313

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKR----KMEIEVMQLCSILEATSDGIAII 468
           +            E +       E     + +             L  +  +   G+A++
Sbjct: 314 LILHSRRSTTFTEEVLAFITTLCERAAHPLARAMSYQAAYETSYHLGQVFSSLPIGLALL 373

Query: 469 NREGIILSTNRAVSKLFGYPVE------DILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522
           +  G ++  N A ++++    +       +        L +           ++      
Sbjct: 374 DLNGRVIRANPAWNQVWRLDAQPQRPSFYVGIDLVEHLLARLNDPFRLSEFCDLGQRTPD 433

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEK 580
           QT E         ++L  L +   +            + D +  +              +
Sbjct: 434 QTFETSLQLRNPYQELHVLSV-PTRDSQQQLTGRLWVVSDRTRER--------------E 478

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
               K +F+  VSHE+RTPLT+I+G++E++ N++   L      E+   +      +  +
Sbjct: 479 SDRLKDEFIGIVSHELRTPLTSILGYTEILLNRQD--LDYESQREFLQTVSNEAERLFKM 536

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILAD 700
           V DLLD+S++E+G + L+   V L + + E    +       ++LI       +P + AD
Sbjct: 537 VKDLLDVSRLEAGVVKLNRWAVGLWQVIEELTLQLHTQLIHHKLLIDARTP--LPPVFAD 594

Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHT----------SNEEVILRVRDTGVGMTN 750
              VKQI  N+LSNAI ++P G +I ++                + +++ VRD G+G+  
Sbjct: 595 RDKVKQIIFNLLSNAIKYSPEGSEIQLTVRRANADDLPATHPPGQWMLIVVRDEGIGIKP 654

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            +  +  + F ++ NS   +  G GLGL +++ +V+ + G+ ++ S    G+      P+
Sbjct: 655 EDQARLFERFQRVDNSNTRQKSGVGLGLYISRLLVELHGGRIWVKSVEGSGSSFSFTLPI 714

Query: 811 YDTSH 815
           +    
Sbjct: 715 WTAPA 719


>gi|254459383|ref|ZP_05072804.1| Hpt sensor hybrid histidine kinase [Campylobacterales bacterium GD
           1]
 gi|207083996|gb|EDZ61287.1| Hpt sensor hybrid histidine kinase [Campylobacterales bacterium GD
           1]
          Length = 958

 Score =  311 bits (797), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 96/400 (24%), Positives = 175/400 (43%), Gaps = 41/400 (10%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP-FTVFLEQN 504
           ++E       S+   +   IAI   +      N+    L GY  ++++            
Sbjct: 300 ELEQHDEYYHSLFNNSIYAIAITGADFKFTHVNKEFCDLLGYDEKELINTFGILDVTYIE 359

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHD 560
             +     + +++        +      TK  K++     I  +   +      ++++ D
Sbjct: 360 DLNYSKSMIDKLIR-GASTKYKIKKRYLTKSAKVVDAVSFIHAIYDDNNTYIGATISILD 418

Query: 561 ISEWKQEKNK-------------------------LSHAKKIAEKESSHKSDFLARVSHE 595
           IS+ K  + +                         L+ AK+ AE  +  K+ F++ +SHE
Sbjct: 419 ISDKKHAQEEVLKHKSRLVELVAQRTQELSKANKLLAKAKESAELANKSKNIFISNMSHE 478

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           IRTP+ AI+GFS ++ + +     N +   Y +   ++   +L ++ D LD+SKIE+GK+
Sbjct: 479 IRTPMNAILGFSRLLSHTKL----NNQQKTYLSRAKKATKSLLSLLEDTLDLSKIEAGKL 534

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSN 714
            +   P      V+E   L++L A EK +LI      ++P+ +L D   +KQ+ +N+++N
Sbjct: 535 TIENIPFQPKVIVTEITELLELNAKEKGLLIEYEIDEHLPKYLLGDPNRIKQVLINLINN 594

Query: 715 AIHFTPSGGQIIISTTHTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           AI FT  G  I +S    S       V   V DTG+G+    L    + F Q+ NS   +
Sbjct: 595 AIKFTQDGS-IYVSVFVNSKNIHNCCVEFVVSDTGIGIKKENLADIFEHFTQVDNSTTKK 653

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            +GTGLGL ++K +V    G+  + S   +G+       L
Sbjct: 654 EDGTGLGLAISKELVKRMGGQIDVQSEYREGSTFSFELTL 693



 Score = 47.7 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/142 (14%), Positives = 45/142 (31%), Gaps = 2/142 (1%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGM-RLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
             A      +++E    +G    ++I    + DV+ I  ++ +  + D L R  +   K 
Sbjct: 322 TGADFKFTHVNKEFCDLLGYDEKELINTFGILDVTYIEDLNYSKSMIDKLIRGASTKYKI 381

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
               +  +   V        IY  N  + G     I+ ++   +    + K   +    +
Sbjct: 382 KKRYLTKSAKVVDAVSFIHAIYDDNNTYIGAT-ISILDISDKKHAQEEVLKHKSRLVELV 440

Query: 208 HEIKKGHSSVEKEKYDIFSQQS 229
            +  +  S   K          
Sbjct: 441 AQRTQELSKANKLLAKAKESAE 462


>gi|120586876|ref|YP_961221.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
            vulgaris subsp. vulgaris DP4]
 gi|120564290|gb|ABM30033.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
            vulgaris DP4]
          Length = 1101

 Score =  311 bits (797), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 108/797 (13%), Positives = 239/797 (29%), Gaps = 74/797 (9%)

Query: 70   SENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLC-DVSDILHID 128
            SE           V      D  G    ++ +     G  A   +      + +D   + 
Sbjct: 329  SEADQRTLTELSPVGIV-TFDPAGRPSYLNRQGRDIAGMTADDPLPAFFALEDTDGGSLI 387

Query: 129  PNNH-IGDLLKRQNTWYGKTTLWP-IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHV 186
             ++     + +   T        P  +GT   + ++   L +    R             
Sbjct: 388  GDDSPFVRVFREGLTLTDFEAWLPMPDGTRKLLSVNATPLVVGREQRN---HGVVATFED 444

Query: 187  NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP-----PHLRMKNKVS 241
                   +   ++ +K+F+ L  +      +      +    +          R +    
Sbjct: 445  VTERRMAQERLQQSEKRFATLFRLSPDSIVLSDFDTGLVVDVNDAFCQLHGLGRDEVVGR 504

Query: 242  SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLN--QYTKKQYFGTLQNNSKES 299
            SL +   + D         L+  +   +  +    ++       +       +   +   
Sbjct: 505  SLRDIGLYDDPAQLDGIISLVREKGRVVDLELRARSLKGEELYLSLSSQLMVIGEANYRL 564

Query: 300  FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVD 358
                             E   L    +D  P+   +  + G     N +F  +    + +
Sbjct: 565  TVVRDMTERYRAEQELREKRLLLEGILDSVPVSIFWKDAAGRFMGCNRTFAQMVGLDTPE 624

Query: 359  DIEIAGGLS-TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
             +         LL     +   A + VM      T       +  + +       +    
Sbjct: 625  TVIGKDDADLGLLPGLAETFREADRKVMA-----TLSPMLGYVERLAFADGRERMLETSK 679

Query: 418  FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILS 476
                      +   G+  +  ++   + ++     +   +   + + +A+++  +     
Sbjct: 680  LPLLAADGRAVGVLGLIRDITESLAAQEQLRQSEERFSRLFRYSPEAMALVDMADQRFAD 739

Query: 477  TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
             N A  +L GY   +++ +           +     L  I +            G TKE 
Sbjct: 740  VNHAFERLTGYEASELVGRGTIEMAFYTDATTRAELLRRIHTEGF--VDNYEFEGRTKEG 797

Query: 537  KLLS--LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
              +   +   I  +         + DI+E K+ +  +   +K+            A ++H
Sbjct: 798  TPMPCSISCSILSIGDRRFILGLVRDITEMKRMQEVMIQTEKMISVGGIA-----AGIAH 852

Query: 595  EIRTPLTAIIGFSEVIKNQRFGP------------LGNPRYIEYA---------NYIDRS 633
            EI  PL  I+  +  +  +                L      +Y            I  +
Sbjct: 853  EINNPLGIILQAAHNLAQRTRPDFAKNLDVATRVGLDMDALRQYMEQRKLDVFIEDIRDA 912

Query: 634  GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL------VQLYANEKRILIR 687
                  I+  +LD S+    K      P  +   + +A++L      ++   + +RI I 
Sbjct: 913  AVRASAIIRHMLDFSRSGGSK----RVPCDVTSILDKAVALAGSDYDLKKSYDFRRITIT 968

Query: 688  TSFANNIPRILADLRSVKQIALNILSNAIHF---TPSGGQ---IIISTTHTSNEEVILRV 741
              +   +P +      ++Q+ LN+L NA H    +   G+   I +         V++ V
Sbjct: 969  RDYEAGLPLVDCSPTELEQVLLNLLRNAAHALAESHRDGEGPAIHLRVRRQDE-TVVIDV 1027

Query: 742  RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA-NMGKFYIFSTPAK 800
            +D G G+      +  +PF            GTGLGL ++  +V   + G   + + P  
Sbjct: 1028 QDNGPGIPVALQRRIFEPFYTTKPPGV----GTGLGLSVSYFIVTKGHGGNLTVVTPPEG 1083

Query: 801  GTLIEIIFPLYDTSHPH 817
            GTL  I  PL  ++  H
Sbjct: 1084 GTLFRIELPLQGSTEAH 1100



 Score = 70.8 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 37/407 (9%), Positives = 89/407 (21%), Gaps = 22/407 (5%)

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247
                   +     +        +              +             + +     
Sbjct: 74  TESIAREEVLVLALENSYIGRSARASAQRKLDAYIRNGTFDQVFLFNLEGEAILAGDPSL 133

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
           A + +V     +    +  ++L       +                 +           N
Sbjct: 134 AGRVNVADRRYFSEAAAGRAALETVVVSRSTGKPSLVMASPLRAF--DGTVVGVVAGVTN 191

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
             + +    EG ++            F+     +    P++L          +   GG S
Sbjct: 192 IETFAKAILEGSHIGRTG------GAFITDTDGVVLGLPAWLSAGSLG----LHEGGGFS 241

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW-----NRENSLAMTFIPFEKAN 422
               A         +     R      + +       W       E  +          +
Sbjct: 242 DAHVAALNRSAETGEVYRFTRGANQRASYTRLNGATHWLLTLEADEGEVLAPARRLAAVS 301

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
                +    +       R     +        ++ E +  GI   +  G     NR   
Sbjct: 302 GSILLVTLITVALILGVLRRAMVSLRHSEADQRTLTELSPVGIVTFDPAGRPSYLNRQGR 361

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNH--YLTEILSLDLRQTLEKITLGSTKEEKLLS 540
            + G   +D L   F +        + +   ++            E          KLLS
Sbjct: 362 DIAGMTADDPLPAFFALEDTDGGSLIGDDSPFVRVFREGLTLTDFEAWLPMPDGTRKLLS 421

Query: 541 LRIII---KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
           +        +   +     T  D++E +  + +L  ++K        
Sbjct: 422 VNATPLVVGREQRNHGVVATFEDVTERRMAQERLQQSEKRFATLFRL 468


>gi|332308096|ref|YP_004435947.1| multi-sensor hybrid histidine kinase [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332175425|gb|AEE24679.1| multi-sensor hybrid histidine kinase [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 781

 Score =  311 bits (797), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 102/402 (25%), Positives = 172/402 (42%), Gaps = 19/402 (4%)

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
            Q         +E E  D    + +       L SI++A+ D I   N EG     NR  
Sbjct: 128 AQEERESVFVELENEIKDRAEKEAQALRLSTLLRSIIDASPDLIYYRNEEGQFAGCNRLA 187

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
            ++ G    +++        E+   S +     E+L  D+  T E     +        +
Sbjct: 188 EQMTGRTEAELIGLTPHEVWEEELASQVAASDHEVLENDVSITEEVWLRFADGRRGYFEM 247

Query: 542 RIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
           R +      +          DI+E KQ +N       I  K S  K+ F+A +SHE+RTP
Sbjct: 248 RKVPFYDKDNKRLGLLAFGRDITERKQAEN-------IVAKASKDKTKFIATISHELRTP 300

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  I+G S ++++ +     +     + + I  SG  + +I ND++DI ++   K+ L  
Sbjct: 301 LNGIVGLSRMLRDTKL----DKEQFAWVSTIYASGITLGNIFNDIIDIDRMGRDKLELSL 356

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
           + VS+ +   E  S+++L A +K +   T     +P  +  D   ++QI  N+L NA+ F
Sbjct: 357 KTVSIKDFTEELSSIIKLLAADKGLAFDTDIKEPLPDFVEVDGTRLRQILWNLLFNAVKF 416

Query: 719 TPSGGQIIISTTHTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           T  G ++ +S    +       V   V DTGVG+   EL+K    + Q+   +     GT
Sbjct: 417 TQKG-KVSLSVEAHTAGDGISHVKFCVGDTGVGIPQTELDKIFAMYYQVNLPEHQSATGT 475

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           G+GL + + MV    G   + S   KGT   +  PL  +  P
Sbjct: 476 GIGLAICQQMVSLMNGDIKVSSEIGKGTCFTVELPLPISKRP 517



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 49/185 (26%), Gaps = 12/185 (6%)

Query: 11  EDILTS-NCKGNTQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLD 69
           EDIL S   + N + L+       +E E+ K      +S       +    +      L 
Sbjct: 103 EDILLSRELQNNIKQLN-------YEIEQRKNAQEERESVFVELENEIKDRAEKEAQALR 155

Query: 70  SENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP 129
                            +  +  G     +    +  G    ++IG+   +V +      
Sbjct: 156 LSTLLRSIIDASPDLIYYR-NEEGQFAGCNRLAEQMTGRTEAELIGLTPHEVWEEELASQ 214

Query: 130 NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRV 189
                  +   +    +   W           ++  +P Y ++ +  G   FG       
Sbjct: 215 VAASDHEVLENDVSITEEV-WLRFADGRRGYFEMRKVPFYDKDNKRLGLLAFG--RDITE 271

Query: 190 DNDPR 194
                
Sbjct: 272 RKQAE 276


>gi|253700507|ref|YP_003021696.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           M21]
 gi|251775357|gb|ACT17938.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           M21]
          Length = 694

 Score =  311 bits (797), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 91/397 (22%), Positives = 172/397 (43%), Gaps = 32/397 (8%)

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
           +E       S++E  SD I +I  +  +   N+   + FGY  +++L  P T  L     
Sbjct: 285 LERSEELYKSLMEDASDAIVVIGGDESVRMVNKMAEEFFGYDAKELLGLPLTKMLLLLNI 344

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL--SLRIIIKKLPFSSCYSLTMHDISEW 564
           S +               + +      KE   +   L     K    +       D++  
Sbjct: 345 SNIPKVHRIFREAAQGAHIAEEMQLCKKEGGAMVAMLHASSIKSGSENVVQAIFRDVTRE 404

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           ++    L  +     + +  K  FL   SHE++TPLT I+G+SE +         +   +
Sbjct: 405 REIILNLEKSSADLARLNRMKDSFLGLASHELKTPLTVIMGYSE-LITTDLADRIDKTVL 463

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           E    I  + + + +I+ D++D+S I+  ++ L  E + L+  +  +++ ++ + + ++ 
Sbjct: 464 EMVVNIANAASRLDNIIKDMVDVSMIDEKRLQLKVEDIQLNRLIEASVNELRFFFSMRKQ 523

Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT-------------- 730
            +  +   +IP I  D   + Q+  NIL NAI FTP GG+I IST+              
Sbjct: 524 EVVVNLDESIPTIRGDALRLMQLLSNILGNAIKFTPDGGKITISTSAKYLLRGKAGSDGS 583

Query: 731 ---HTSNEEVILRVRDTGVGMTNYELEKAMKPFG-----QIPNSQQ--IRGEGTGLGLPL 780
                 +  + + V DTG+G+   +  +  + F      Q  +S +   + +G GLGL +
Sbjct: 584 AEGREHHLFLEITVTDTGIGIDREDQLRVFEKFYEVGNIQEHSSGKVAFKAKGAGLGLSI 643

Query: 781 AKAMVDANMGKFYIFST---PAK--GTLIEIIFPLYD 812
           AK +VD + G+ ++ ST   P +  G+   I+ PL  
Sbjct: 644 AKGIVDMHGGEIWVESTGYNPERFPGSTFHILLPLAP 680


>gi|188585612|ref|YP_001917157.1| multi-sensor signal transduction histidine kinase [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179350299|gb|ACB84569.1| multi-sensor signal transduction histidine kinase [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 597

 Score =  311 bits (796), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 76/365 (20%), Positives = 156/365 (42%), Gaps = 26/365 (7%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            ++  E  +L ++L    DG+  IN +  +   N A          D + +     +   
Sbjct: 251 SQLTEEKNRLSTLLNNMPDGVIEINHKSEVTLINPAARSFLNINAYDSVDQ--QELVSLT 308

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL--PFSSCYSLTMHDIS 562
               +N+ +T++L    + + E          +++ + +    L    S    + + DI+
Sbjct: 309 RNFDLNNAVTQVLKSGEQVSRETDF-----NNQIVRMYVTPLPLFEEGSRGAVVILQDIT 363

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  + +                + +F++ +SHE++TPLT+I GF E +K +  G   N  
Sbjct: 364 DLTKLE--------------QMRKEFISNISHELKTPLTSIKGFVETLKEETLGE--NNT 407

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             E+ N I+   + V  ++NDL  +S++E+ K+  + + V++   + + +S+ Q    + 
Sbjct: 408 QREFLNIIEEETDRVSRLINDLTILSRLETNKVEFNQDEVNVLNFLDKTVSISQKRWQQD 467

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
              I         + L D   ++Q+ LN++ NA    P G +I +    +  + +   V 
Sbjct: 468 GYRIYRGGVPFDLKALMDEDKIQQVILNLVDNACRHNPPGTKIKLK-AVSEKDYIRFSVT 526

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G G+   + E+  + F ++  S+     GTGLGL +AK  V  +     + S   +GT
Sbjct: 527 DNGKGIPEEDKERIFERFYRVDKSRYRDYGGTGLGLSIAKHAVIGHNSSLNVISRVGRGT 586

Query: 803 LIEII 807
                
Sbjct: 587 TFYFY 591


>gi|296329726|ref|ZP_06872211.1| sporulation-specific ATP-dependent protein histidine kinase
           [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305674123|ref|YP_003865795.1| sporulation-specific ATP-dependent protein histidine kinase
           [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296153224|gb|EFG94088.1| sporulation-specific ATP-dependent protein histidine kinase
           [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305412367|gb|ADM37486.1| sporulation-specific ATP-dependent protein histidine kinase
           [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 606

 Score =  311 bits (796), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 103/508 (20%), Positives = 203/508 (39%), Gaps = 34/508 (6%)

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364
           H   P+         +     V+  P P  +   G + Y N + L +   KS   I    
Sbjct: 128 HEIEPASPESTTYITDDYERLVENLPSPLCISVKGKIVYVNSAMLSMLGAKSKGAIIGKW 187

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
                    +  D    + + + +           +    W R +   +          +
Sbjct: 188 SYE--FIEEEYHDIVKNRIIRMQKG------MEVGMIEQTWKRLDGTPVHLEVKASPTVY 239

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
                +  +  +    +  +  ++    +   +++ + D IA+I   G  +  N +   L
Sbjct: 240 KNQQAELLLLIDISSRKKFQTILQKSRERYQLLIQNSIDTIAVI-HNGKWVFMNESGISL 298

Query: 485 FGY-PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           F     ED++ K     L       +   +  I     +  + K +   T + +++   +
Sbjct: 299 FEAATYEDLIGKNIYDQLHPCDHEDVKERIQNIAEQKTQSEIVKQSWF-TFQNRVIYTEM 357

Query: 544 IIKKLP--FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
           +         +   + + DISE KQ +  +  ++K++           A ++HEIR PLT
Sbjct: 358 VCIPTTFFGEAAVQVILRDISERKQTEELMLKSEKLSIA-----GQLAAGIAHEIRNPLT 412

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           AI GF +++K    G         Y + +    + +  I+++LL ++K +   +    E 
Sbjct: 413 AIKGFLQLMKPTMEGNE------HYFDIVFSELSRIELILSELLMLAKPQQNAVK---EY 463

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           ++L + + E  +L++  AN   I IRTS+ N+   I  D   +KQ+ +N++ NA+   P 
Sbjct: 464 LNLKKLIGEVSALLETQANLNGIFIRTSYENDSIYINGDQNQLKQVFINLIKNAVESMPD 523

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           GG + I  T      V + V+D G G+    L +  +PF         + +GTGLGL + 
Sbjct: 524 GGTVDIIIT-EDEHSVHVTVKDEGEGIPEKVLNRIGEPFLTT------KEKGTGLGLMVT 576

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             +++ + G  ++ S P KGT  +I FP
Sbjct: 577 FNIIENHQGVIHVDSQPEKGTAFKISFP 604


>gi|117619924|ref|YP_857513.1| virulence sensor protein BvgS [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117561331|gb|ABK38279.1| virulence sensor protein BvgS [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 1089

 Score =  311 bits (796), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 128/716 (17%), Positives = 237/716 (33%), Gaps = 51/716 (7%)

Query: 119 CDVSDILHIDP-NNHIGDLLKRQ-NTWYGKTTLWPIEGTNLYVPIDLAALP--IYSRNRE 174
            D++  L     N  I D+++R    +  +   W      + V +     P  +   + +
Sbjct: 256 SDITHSLIFSQWNGPIRDIVERPSELYSAEERAWLATAGPVRVWLMDDLYPYGVRDYDNQ 315

Query: 175 FSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL 234
            +G                  L K   +       +  G      E              
Sbjct: 316 LTGMS-------------VEMLEKISRRSGLRFEFVSYGSELARNEALLRGELDLIGAIS 362

Query: 235 RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294
           R   +   L     +  D +         +    L            +     ++  +  
Sbjct: 363 RPVAESYRLLPSLPYATDDIYVLVARKGDALSGDL-------AQLAGKRVGSTHYNPIAR 415

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLL--LT 352
               S          +++A  D   +     +              +  A P+       
Sbjct: 416 RLDNSRVSYLESADEAMAAVDDGRLDAAIVPLYFAQHAVECGRLSQIRIAGPADNQPIRM 475

Query: 353 KYKSVDDIE-IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411
            + S+     +   +   + +   ++   +      R                       
Sbjct: 476 GFASLPGNRMLMNVIDKTILSIAPNELATMSYQWRNRKLPAPTFME--------RNAPYF 527

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471
            +                +        +    +R++E  V  + ++ E+    I + ++ 
Sbjct: 528 YLLLAGLFAIALLLLYRNRMLNRLARSEQAS-RRQLEEHVRFIEALGESLPHPIVVRDKS 586

Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTV----FLEQNTPSVMNHYLTEILSLDLRQTLEK 527
           G ++  N     +   P+E +L   F       L     + +     ++L        ++
Sbjct: 587 GKVILCNSKYLAILNAPIERVLGTSFAEGLKGLLGAEAITTLEQDFQQVLQSGSPILSDR 646

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
           I       + +    +       + S       DI+E K  +  L  AK+ A++ S  KS
Sbjct: 647 IFSQRGPRQFVYHWMVPYFDYRGAISGVINGWIDITERKTMEEALRRAKEQADRASRAKS 706

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
           DFLA +SHEIRTP+ AI+G  E+       P   P   E       S N +LD++ D+LD
Sbjct: 707 DFLATMSHEIRTPMNAILGMLELASQD---PALAPYTGEQLRIASESANGLLDLIGDVLD 763

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706
           IS IESG++ L  EP  L   +          A +K +  R      +PR+L D   ++Q
Sbjct: 764 ISSIESGQLTLAPEPCELAPLLHSVARAFAGMAKQKGLSYRVELDP-LPRVLIDGPRLRQ 822

Query: 707 IALNILSNAIHFTPSGGQIIISTTH---TSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
           I  N+L NAI FT  G ++ +  +        ++ L +RD+GVG+   +L     PF + 
Sbjct: 823 IVFNLLGNAIKFTERG-EVSLQASLVGSAQQPQLHLLIRDSGVGIAPDKLPGLFNPFYRA 881

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819
            +    +  GTGLGL +A+ +     GK  + S    GT + I  PL   +    C
Sbjct: 882 HDPY--QFAGTGLGLNIARMLCQLMGGKIAVSSELGAGTELRIRLPLTPLAPEPAC 935



 Score = 45.0 bits (105), Expect = 0.047,   Method: Composition-based stats.
 Identities = 23/251 (9%), Positives = 62/251 (24%), Gaps = 13/251 (5%)

Query: 79  IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCD-----VSDILHIDPNNHI 133
                      D  G +   + +    +     +++G    +     +            
Sbjct: 574 ESLPHPIVVR-DKSGKVILCNSKYLAILNAPIERVLGTSFAEGLKGLLGAEAITTLEQDF 632

Query: 134 GDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193
             +L+  +            G   +V   +  +P +      SG     I          
Sbjct: 633 QQVLQSGSPILSDRIF-SQRGPRQFVYHWM--VPYFDYRGAISGVINGWI--DITERKTM 687

Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253
               +R  ++       K    +    +       +    L + ++  +L  Y   +  +
Sbjct: 688 EEALRRAKEQADRASRAKSDFLATMSHEIRT-PMNAILGMLELASQDPALAPYTGEQLRI 746

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
                  LL      L +     +  L    +      L ++   +F  ++ +   S   
Sbjct: 747 ASESANGLLDLIGDVL-DISSIESGQLTLAPEPCELAPLLHSVARAFAGMAKQKGLSYRV 805

Query: 314 YFDEGENLTPE 324
             D    +  +
Sbjct: 806 ELDPLPRVLID 816


>gi|114570677|ref|YP_757357.1| multi-sensor hybrid histidine kinase [Maricaulis maris MCS10]
 gi|114341139|gb|ABI66419.1| multi-sensor hybrid histidine kinase [Maricaulis maris MCS10]
          Length = 815

 Score =  311 bits (796), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 99/419 (23%), Positives = 181/419 (43%), Gaps = 24/419 (5%)

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469
            L +                Q        +       +E    ++   +  +SDG    +
Sbjct: 253 GLGVLLSIAVGVGTHFLASGQIRQRELAEERESAYEALERNRERVALAVRGSSDGFWDWD 312

Query: 470 REGIILSTNRAVSKLFGYPVE--DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
            E  +L  +  +  L G+P E   I+   +   +  +        L   +       L+ 
Sbjct: 313 LERNVLYHSPRLRALLGHPEEAAHIVDAEYADDIHPDDRDRSERALAAHIKTGADYDLQL 372

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSS-CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
               +  E +    R I ++    +   + ++ DI++  +        +  A   +  KS
Sbjct: 373 RFRCANGEYRWFRTRGIAQRNDGRAVRMAGSITDITDLIEA-------RDRANAANRAKS 425

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
           DFLA +SHEIRTP+  I+G + V+ ++      N +     + I RSG+ ++ +++D+LD
Sbjct: 426 DFLANMSHEIRTPMNGILGMARVLADKDLPDDVNSK----LDVIVRSGDTLMHLLDDILD 481

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF-ANNIPRILADLRSVK 705
           +SKIE+G++ L   P  L+   S   +L +  A++K + +       +      D   + 
Sbjct: 482 LSKIEAGQIELDEAPFDLEIIGSRVEALYRDTADKKGLTLEVEVTDRDGVSRHGDPLRLS 541

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDTGVGMTNYELEKAMKPFG 761
           QIA N+++NAI FT SG ++ ++   T++      + L V DTG+GM+  + +   + F 
Sbjct: 542 QIANNLVANAIKFTASG-KVRMTLGPTADGPDSDMIELVVSDTGIGMSEAQCQSIFEKFV 600

Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL----YDTSHP 816
           Q  +S   R  GTGLGL + K + D   G   + S P +GT   +  PL     DT+ P
Sbjct: 601 QADSSTTRRFGGTGLGLAICKGLADQMGGTIDVASNPGQGTTFTVRLPLAPVIADTASP 659



 Score = 43.9 bits (102), Expect = 0.10,   Method: Composition-based stats.
 Identities = 29/246 (11%), Positives = 59/246 (23%), Gaps = 8/246 (3%)

Query: 87  WNIDAHGYLKEISEELPKTIGNY--AFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTW 143
           W+ D    +   S  L   +G+   A  ++     D       D     +   +K    +
Sbjct: 309 WDWDLERNVLYHSPRLRALLGHPEEAAHIVDAEYADDIHPDDRDRSERALAAHIKTGADY 368

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHV-NRVDNDPRALGKR-LD 201
             +       G   Y       +   +  R          +       +   A  +   D
Sbjct: 369 DLQLRFRCANGE--YRWFRTRGIAQRNDGRAVRMAGSITDITDLIEARDRANAANRAKSD 426

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH-KDDVLKTEKYP 260
              +  HEI+   + +      +  +  P       + +    +   H  DD+L   K  
Sbjct: 427 FLANMSHEIRTPMNGILGMARVLADKDLPDDVNSKLDVIVRSGDTLMHLLDDILDLSKIE 486

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
               E    P   +     +    +            E  +      H           N
Sbjct: 487 AGQIELDEAPFDLEIIGSRVEALYRDTADKKGLTLEVEVTDRDGVSRHGDPLRLSQIANN 546

Query: 321 LTPETV 326
           L    +
Sbjct: 547 LVANAI 552


>gi|29346408|ref|NP_809911.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|253568192|ref|ZP_04845603.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
 gi|29338304|gb|AAO76105.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|251842265|gb|EES70345.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
          Length = 810

 Score =  311 bits (796), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 107/515 (20%), Positives = 197/515 (38%), Gaps = 40/515 (7%)

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
               D  E +        P    +Y   G L   N   L +      +++        L 
Sbjct: 314 RLALDHREKILRNIYKNLPAGIELYDKDGYLIDINDKELEIFGLTDKNEVLGIN----LF 369

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLH----TIQWNRENSLAMTFIPFEKANQFPE 426
           D P +      K   L   +    + +         I+  R+  + +T       +   +
Sbjct: 370 DNPNIPQEIKEK---LRARNDVDFSINYDFSKVNKYIETQRKGVINLTTKVTTLYDSQNQ 426

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN---REGIILSTNRAVSK 483
            +    I  +  +T     K++        I +  + G A  N   R+G          +
Sbjct: 427 FINYLFINIDTTETTNAYTKIQEFENLFLLIGDYANVGFAHFNILTRDG---YAQDTWYR 483

Query: 484 LFG----YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
             G     P+ +++       +     +V+  ++  +       +L K    S +  K  
Sbjct: 484 NLGEKDGTPMTEVIG--VYSHVHPEDQAVLKSFVRGVKE-GKATSLRKEVRVSRENGKYT 540

Query: 540 SLRIII-----KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
              I +     +            +DI+  K+ + KL  A+  AE+    KS FLA +SH
Sbjct: 541 WTSINVMVRDYRPEEGIIEMLCINYDITTLKETEQKLIIARDKAEELDRLKSAFLANMSH 600

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           EIRTPL AI+GFS ++              +Y   +  + +L+L +++D+LD++KIE+G 
Sbjct: 601 EIRTPLNAIVGFSSLLAETE----SKEECQDYIKIVQDNNDLLLRLISDILDLAKIEAGT 656

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714
            N  +  + ++E  SE I    +      I +          I  D     Q+  N ++N
Sbjct: 657 FNFVYADLDVNEVCSEIIKSTGMKVKG-NIKLLFEKQIPECHIYTDKNRFMQVITNFINN 715

Query: 715 AIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           A+ FT  G  I +     S++++   VRDTGVG+   ++    + F ++ N      +GT
Sbjct: 716 ALKFTHEG-TIALGYEQISSQKIRFYVRDTGVGIPASKINSVFERFVKLNNF----VQGT 770

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GLGL + K+++    G+  + ST   G+      P
Sbjct: 771 GLGLSICKSIITQMEGEIGVDSTEGAGSCFWFTLP 805



 Score = 40.0 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 9/62 (14%), Positives = 28/62 (45%), Gaps = 1/62 (1%)

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRK 495
           ++  + ++  ++     L +I +    GI + +++G ++  N    ++FG     ++L  
Sbjct: 307 ELQAKEDRLALDHREKILRNIYKNLPAGIELYDKDGYLIDINDKELEIFGLTDKNEVLGI 366

Query: 496 PF 497
             
Sbjct: 367 NL 368


>gi|310824892|ref|YP_003957250.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309397964|gb|ADO75423.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 693

 Score =  311 bits (796), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 101/665 (15%), Positives = 214/665 (32%), Gaps = 58/665 (8%)

Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK-NKVSSLTEYY 247
                +      D+    +  +       + +++ +   ++    L     +++      
Sbjct: 35  RQERSQVAHIEADEFKLLMDAVADAVLVCDGQEHILHLNKAAELLLGWTREELAGQPFSV 94

Query: 248 AHKDDVLKTEKYPLLT------SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301
                +      PL        +     P        N  +   +   G+ +    E   
Sbjct: 95  LVPQRIRTWGGVPLTQHLLDRNASRQGRPVLVPLRHRNGPEVVLEAVIGSTKAREHERIV 154

Query: 302 YLSHRNHPSLSAYFDE-----------------------GENLTPETVDKCPIPFFVY-S 337
                      A  +                         E L     +  P+  F + +
Sbjct: 155 LTLRHIPEVPDATTEPLEQGLCLYPWQHAHTGLAHMPTLAERLYQLIFEHAPLGLFHFGN 214

Query: 338 HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397
              +   N  F  +                  L    L      + +   R+      A 
Sbjct: 215 PPFIIACNDCFAEILGSTR-----------QRLLGLNLLTLRDTRLMDCVRATLLGKHAR 263

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
              H           +        ++    +   GI  +       + +   ++    ++
Sbjct: 264 YEGHYTSVTTGKVTPVRVHFAPFFDEQERVVGGVGIVEDITSQHRMEEERATQLALASTL 323

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
           L     G+A  +     +  N A++   G P E  L +     L  +    +  +L  +L
Sbjct: 324 LRTAPIGMAFFDTRLRFVHINDALATATGQPPEAHLGRSLPAML-GSGGLHLEQFLRHVL 382

Query: 518 SLDLR-QTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLS 572
                 + LE            L   + I  +       L     + + +  K  + + S
Sbjct: 383 ETGQPLERLELSAQELGLAGPWLYWTLSIYPVRAVDGRILGIGSVVENTTGTKLAEQERS 442

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN--QRFGPLGNPRYIEYANYI 630
              + A++    + DFL   SHE++TPLT +      ++   +R  P+         ++ 
Sbjct: 443 RLLREAQEAVRVRDDFLTIASHELKTPLTPLSLRLATLERKLERGEPVDPAS----LHHA 498

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
            +    +  ++NDLLD S+IESG + LH +P  LD  +   I + +   + +   I    
Sbjct: 499 RQHLTRLTTLINDLLDTSRIESGGLALHPQPTRLDVLIEHVIHVTETLHDARD-RITFHL 557

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL-RVRDTGVGMT 749
                 +L D   ++Q+  N+L NA+ ++P GG I +S    +  +V+L  V D G+G+ 
Sbjct: 558 PVRPIEVLGDPYRLEQVISNLLENALKYSPDGGTIRVSL--EARGDVVLMTVSDPGIGIP 615

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           + + +   + + +  N       G GLGL + + +V  + G  ++ S   +G+   +  P
Sbjct: 616 SDQQQHLFERYFRARNVSTHAYGGLGLGLYICRDIVARHGGSIWVESEVGRGSTFYVALP 675

Query: 810 LYDTS 814
               S
Sbjct: 676 TLQAS 680



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/321 (9%), Positives = 77/321 (23%), Gaps = 23/321 (7%)

Query: 282 QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GN 340
                     L+    +             S       +     +D       V     +
Sbjct: 9   AQWITLRGRGLRALLVQPRWGAGGLVRQERSQVAHIEADEFKLLMDAVADAVLVCDGQEH 68

Query: 341 LFYANPSFLLLTKYKSVDDIEIAGG--------------LSTLLDAPKLSDNNAIKPVML 386
           + + N +  LL  +   +                     L+  L     S       V L
Sbjct: 69  ILHLNKAAELLLGWTREELAGQPFSVLVPQRIRTWGGVPLTQHLLDRNASRQGRPVLVPL 128

Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK-ANQFPENMPQNGIEPEDVDTRINKR 445
              +   +   A + + +      + +T     +  +   E + Q               
Sbjct: 129 RHRNGPEVVLEAVIGSTKAREHERIVLTLRHIPEVPDATTEPLEQGLCLYPWQHAHTGLA 188

Query: 446 KMEIEVMQL-CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            M     +L   I E    G+        I++ N   +++ G   +    +   + L   
Sbjct: 189 HMPTLAERLYQLIFEHAPLGLFHFGNPPFIIACNDCFAEILGSTRQ----RLLGLNLLTL 244

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDIS 562
             + +   +   L     +     T  +T +   + +                  + DI+
Sbjct: 245 RDTRLMDCVRATLLGKHARYEGHYTSVTTGKVTPVRVHFAPFFDEQERVVGGVGIVEDIT 304

Query: 563 EWKQEKNKLSHAKKIAEKESS 583
              + + + +    +A     
Sbjct: 305 SQHRMEEERATQLALASTLLR 325



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/338 (9%), Positives = 76/338 (22%), Gaps = 31/338 (9%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D       I++ L    G      +G  L  +     +     +  +L+           
Sbjct: 335 DTRLRFVHINDALATATGQPPEAHLGRSLPAMLGSGGLHLEQFLRHVLETGQPLERLELS 394

Query: 150 WPIEG-TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               G    ++   L+  P+ + +    G     +V              RL ++     
Sbjct: 395 AQELGLAGPWLYWTLSIYPVRAVDGRILGIG--SVVENTTGTKLAEQERSRLLREAQEAV 452

Query: 209 EIKKGHSSVEKEKYDI----FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY----- 259
            ++    ++   +        S +      +++           H    L          
Sbjct: 453 RVRDDFLTIASHELKTPLTPLSLRLATLERKLERGEPVDPASLHHARQHLTRLTTLINDL 512

Query: 260 -PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
                 E   L        +++          TL +       +L  R    L   +   
Sbjct: 513 LDTSRIESGGLALHPQPTRLDVLIEHVIHVTETLHDARDRITFHLPVRPIEVLGDPYRLE 572

Query: 319 E---NLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
           +   NL    +   P    +     +       ++L           +     L +    
Sbjct: 573 QVISNLLENALKYSPDGGTI----RVSLEARGDVVLMTVSDPGIGIPSDQQQHLFERYFR 628

Query: 376 SDNNAIKP-----------VMLYRSDRTCIAASARLHT 402
           + N +                +       I   + +  
Sbjct: 629 ARNVSTHAYGGLGLGLYICRDIVARHGGSIWVESEVGR 666



 Score = 47.7 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 35/352 (9%), Positives = 84/352 (23%), Gaps = 23/352 (6%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEG 154
           +   ++   + +G+   +++G+ L  + D   +D       LL +   + G    +    
Sbjct: 218 IIACNDCFAEILGSTRQRLLGLNLLTLRDTRLMD--CVRATLLGKHARYEG---HYTSVT 272

Query: 155 TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214
           T    P+ +   P +       G  G GIV      +             S L       
Sbjct: 273 TGKVTPVRVHFAPFFDEQERVVG--GVGIVEDITSQHRMEEERATQLALASTLLRTAPIG 330

Query: 215 SSVEKEKYDIFSQQS----PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270
            +    +                    +   SL          L+     +L + +    
Sbjct: 331 MAFFDTRLRFVHINDALATATGQPPEAHLGRSLPAMLGSGGLHLEQFLRHVLETGQPLER 390

Query: 271 EQEDFHTINLNQYTKKQYFG--TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
            +     + L             ++          S   + + +   ++  +     + +
Sbjct: 391 LELSAQELGLAGPWLYWTLSIYPVRAVDGRILGIGSVVENTTGTKLAEQERSR---LLRE 447

Query: 329 CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388
                 V       +   +   L    +   + +A     L     +   +         
Sbjct: 448 AQEAVRVRDD----FLTIASHELKTPLTPLSLRLATLERKLERGEPVDPASLHHARQHLT 503

Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
              T I        I+      LA+   P          +       +  D 
Sbjct: 504 RLTTLINDLLDTSRIESGG---LALHPQPTRLDVLIEHVIHVTETLHDARDR 552


>gi|242372584|ref|ZP_04818158.1| two-component sensor histidine kinase [Staphylococcus epidermidis
           M23864:W1]
 gi|242349801|gb|EES41402.1| two-component sensor histidine kinase [Staphylococcus epidermidis
           M23864:W1]
          Length = 610

 Score =  311 bits (796), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 78/388 (20%), Positives = 170/388 (43%), Gaps = 29/388 (7%)

Query: 426 ENMPQNGIEPEDVDTRINKRKM--EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           + + +  +   ++  R+ + +   E E  +L S++   SDGI   +R G +   N    K
Sbjct: 237 DEIGELALAFNNLSKRVQEAQANTESEKRRLDSVITHMSDGILATDRRGRVRIANDMALK 296

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           + G   ED++       L       ++       S  L    E+  +   K         
Sbjct: 297 MLGLAKEDVIGYYMLGLLNLENEFSLDEIQENNDSFLLDINEEEGIIVRVK------FST 350

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
           I+++  F + Y   +HD++E +Q + +              + +F+A VSHE+RTPLT++
Sbjct: 351 IVQETGFVTGYIAVLHDVTEQQQVERE--------------RREFVANVSHELRTPLTSM 396

Query: 604 IGFSEVIKNQRFGPLGNPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
             + E ++    G   +     ++ +        ++ +VNDLL +SK+++    +  E +
Sbjct: 397 NSYIEALE---GGAWQDESLAPQFLSVTREETERMIRLVNDLLQLSKMDNESDQITKEII 453

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
             +  +++ I+  +     K                 D   + Q+  N+++NA+ ++   
Sbjct: 454 DFNMFINKIIN--RHEMAAKDTTFVREIPQQTIFAEIDPDKMTQVFDNVITNAMKYSRGD 511

Query: 723 GQIIISTTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
            ++       +    + +R++D G+G+   +++K    F ++  ++  +  GTGLGL ++
Sbjct: 512 KRVEFHVKQNALYNRMTIRIKDNGIGIPINKVDKIFDRFYRVDKARTRKMGGTGLGLAIS 571

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           K +V+A+ G+ +  S   +GT I I  P
Sbjct: 572 KEIVEAHNGRIWANSVEGQGTSIFITLP 599


>gi|300702723|ref|YP_003744323.1| sensor protein [Ralstonia solanacearum CFBP2957]
 gi|299070384|emb|CBJ41679.1| Sensor protein [Ralstonia solanacearum CFBP2957]
          Length = 994

 Score =  311 bits (796), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 98/606 (16%), Positives = 193/606 (31%), Gaps = 34/606 (5%)

Query: 220 EKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTIN 279
                   ++    L     ++ LT     + D        +      S   +       
Sbjct: 8   AAPAHLWWRAGTALLLCAAAITLLTASDYTQADDATRALRQMGPPPAPSASARMARCAPA 67

Query: 280 LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH- 338
                      ++++          HR      A      +     ++  P P       
Sbjct: 68  AAIVLWTLTMLSIRHMQLRRE----HRQRRHAEATLARQLDFQHMLMESLPFPLAAQDAQ 123

Query: 339 GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398
                 N +F  L        +        L  A   +            +         
Sbjct: 124 HRYVAVNTAFCHLFGRPREAVLGRTPA--HLGLACTRTAARVQDIDRRAAAAGQDTREEL 181

Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458
              TI     +   + +          +         +  + R  + + E +   L   +
Sbjct: 182 ---TIMAADGSERCVLYWVAPLRQPDGQPAGTIASLIDVSEIREAQARAERQAQHLHGSI 238

Query: 459 EATSDGIAII-----NREGIILSTNRAVSKLFGYP---VEDILRKPFTVFLEQNTPSVMN 510
           E+    +             +     +  +  G        +L  P  +  + +   +  
Sbjct: 239 ESLPALVCQFEMRPGTARSRMRYVAGSARETLGVQTGAAPFLLPSPARLVHQDDHRRMHE 298

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---YSLTMHDISEWKQE 567
             L   + L     L++       +  +  L    +    S     ++  + DI++ +  
Sbjct: 299 AALQSAMQL---TPLDQPFRHVGDDGSVRWLHAHARPRRESDGRTVWTGYLRDITQERAR 355

Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
            +    A++ AE     K  FLA +SHEIRTP+  ++G  E++                 
Sbjct: 356 ADAQETARQAAESALHAKDRFLATMSHEIRTPMNGVLGLVELLLQTPLER----EQQRMV 411

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
             +  S   +L I++D+LD +KIE+G +++      L E     + L+   A+E+ + +R
Sbjct: 412 TLMQESSRALLHILDDILDYAKIEAGHLSVTPTQTDLRELFDSTVGLLASRAHERSLSVR 471

Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH----TSNEEVILRVR 742
                 +P  +  D   ++Q+  N+LSNAI FT  G  + +S            +I+R+ 
Sbjct: 472 VEVDATVPATVSVDGMRLRQVLSNLLSNAIKFTERGS-VHLSAACVGTAADTAHLIIRIA 530

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG+G+          PF Q  N    R  GTGLGL +++ +     G   + S P  GT
Sbjct: 531 DTGIGIAPEAQATLFTPFVQADNPAARRHGGTGLGLAISRQLARLMGGSLDMDSKPGVGT 590

Query: 803 LIEIIF 808
            + +  
Sbjct: 591 TLTLRL 596



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/252 (7%), Positives = 58/252 (23%), Gaps = 15/252 (5%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS---DILHIDPNNHIGDLLKRQNTWYGK 146
           DA      ++       G     ++G     +            +              +
Sbjct: 121 DAQHRYVAVNTAFCHLFGRPREAVLGRTPAHLGLACTRTAARVQDIDRRAAAAGQDTREE 180

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRG--FGIVHVNRVDNDPRALGKRLDKKF 204
            T+   +G+   V   +A  P+   + + +G       +  +           + L    
Sbjct: 181 LTIMAADGSERCVLYWVA--PLRQPDGQPAGTIASLIDVSEIREAQARAERQAQHLHGSI 238

Query: 205 SHLHEIKKGHS-----SVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
             L  +          +  + +Y   S +               +       D  +    
Sbjct: 239 ESLPALVCQFEMRPGTARSRMRYVAGSARETLGVQTGAAPFLLPSPARLVHQDDHRRMHE 298

Query: 260 PLLTSEESSLPEQEDFHTI--NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
             L S     P  + F  +  + +      +    +  S     +  +    +      +
Sbjct: 299 AALQSAMQLTPLDQPFRHVGDDGSVRWLHAH-ARPRRESDGRTVWTGYLRDITQERARAD 357

Query: 318 GENLTPETVDKC 329
            +    +  +  
Sbjct: 358 AQETARQAAESA 369


>gi|307708757|ref|ZP_07645219.1| sensor protein YycG [Streptococcus mitis NCTC 12261]
 gi|307615123|gb|EFN94334.1| sensor protein YycG [Streptococcus mitis NCTC 12261]
          Length = 452

 Score =  311 bits (796), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 91/376 (24%), Positives = 168/376 (44%), Gaps = 33/376 (8%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           R+ +  +E E  +L SIL   +DG+   NR G I   N    K  G   ED+L K     
Sbjct: 83  RLTQENLEQESKRLHSILSYMTDGVLATNRRGKITMINDMAKKQLGVQKEDVLNKSILEL 142

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SL 556
           L+      +   +T++         E +        + LSLR+    +   S +      
Sbjct: 143 LKIEDEYELRDLITQVP--------ELMIDSQDANGEYLSLRVRFALVRRESGFISGLVA 194

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            +HD +E ++E+ +                 F++ VSHE+RTPLT++  + E +     G
Sbjct: 195 VLHDTTEQEKEERERRL--------------FVSNVSHELRTPLTSVKSYLEAL---DEG 237

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV- 675
            L  P   ++        N ++ +V DLL +S+I++   +L  E ++    ++  ++   
Sbjct: 238 ALSEPVAPDFIKVSLDETNRMMRMVTDLLHLSRIDNATSHLDVELINFTAFITFILNRFD 297

Query: 676 --QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
             +    EK+  +   +      I  D   + Q+  NIL+NAI ++P GG+I ++   T 
Sbjct: 298 KMRGSDEEKKYELVRDYPITSVWIEIDTDKMTQVIDNILNNAIKYSPDGGKITVTMKTTD 357

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
           ++ + L + D G+G+   +L +    F ++  ++     GTGLGL +AK ++  + G  +
Sbjct: 358 DQMI-LSISDQGLGIPKQDLPRIFDRFYRVDRARSRAQGGTGLGLSIAKEIIKQHNGFIW 416

Query: 794 IFSTPAKGTLIEIIFP 809
             S   KG+   I+ P
Sbjct: 417 AKSIYGKGSTFTIVLP 432


>gi|224538905|ref|ZP_03679444.1| hypothetical protein BACCELL_03801 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519483|gb|EEF88588.1| hypothetical protein BACCELL_03801 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 652

 Score =  311 bits (796), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 102/440 (23%), Positives = 176/440 (40%), Gaps = 15/440 (3%)

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
              P    +         + D    +   R+  +  + E       +   + ++      
Sbjct: 87  FVHPD-DKHLVSLEGFQKKLDGFDESNVLRVRCVGAHGEIVWLEDHLLSVEKDKSGNPER 145

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
                         +  +     +   I++A  + I I++++  I     +   +  +PV
Sbjct: 146 LLCYTVNVTGQCEREAHISRVEERNRKIIQALPEFIFILDQDFFITDVLMSSDTILLHPV 205

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
           E +               +    + + L     + +E        E      RI      
Sbjct: 206 EQLRGADGRTIYSPEVSDLFLRNIRQCLEDGELKEIEYPLDVDDCERHYFQARIAPF--- 262

Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
             +     +HDI +  Q  N+L  AK+ AE+    KS FLA +SHEIRTPL AI+GFSE+
Sbjct: 263 EDNKVMALIHDIGDRVQRSNELIEAKQRAEEADRMKSVFLANMSHEIRTPLNAIVGFSEI 322

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           I              EY N I ++ NL+L ++ND+LD+S+IESGK  ++F+ V +   + 
Sbjct: 323 IA----LTEDEVEKAEYLNIIQKNSNLLLQLINDILDLSRIESGKSEMNFQLVEMTGLID 378

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
           E   + +L      I +     +    I+ D   + Q+  N LSNAI  T  G  I +  
Sbjct: 379 EVEKVHRLKMKT-GIRLNVMRPDEEIWIMVDRNRITQVLFNFLSNAIKNTHEGA-ITLGL 436

Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
                E + + V DTG G+   +L      F ++        +GTGLGLP+ +++V+   
Sbjct: 437 EVC-GEWLKVYVTDTGCGIAKEKLPLIFNRFEKL----NDFVQGTGLGLPICQSIVERLG 491

Query: 790 GKFYIFSTPAKGTLIEIIFP 809
           GK  + S    G+   +  P
Sbjct: 492 GKISVESEVGVGSTFVMTLP 511


>gi|212212502|ref|YP_002303438.1| two component system histidine kinase [Coxiella burnetii CbuG_Q212]
 gi|212010912|gb|ACJ18293.1| two component system histidine kinase [Coxiella burnetii CbuG_Q212]
          Length = 683

 Score =  311 bits (796), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 101/516 (19%), Positives = 210/516 (40%), Gaps = 29/516 (5%)

Query: 321 LTPETVDKCPIPFFVYSHG--NLFYANPSFLLLTKYKSVDDIEIAG-GLSTLLDAPKLSD 377
           L     +     F++ S       Y +P+F  +               ++ ++   +   
Sbjct: 33  LFLNLAETSQDIFWIRSVDFYTHVYVSPAFENIFGISRQTLYANPNKWMNAVIIEDRDRL 92

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
            + I    +            R+     +    +           +  + +   G+  + 
Sbjct: 93  RHLIMEWQVKNKKGAAYTVDYRI----IDAYGEMHWINETSYPVYEDDQCLGYAGVVKDV 148

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREG-IILSTNRAVSKLFGYPVEDILR-- 494
              ++  ++ +  V      +E  S    +    G   +  +    K++G   E + +  
Sbjct: 149 SSEKLRVKEFDNAVHYFRHFVERVSGVFWVKGSRGDKQIYISPTYEKIWGVSCESLYQNP 208

Query: 495 KPFTVFLEQNTP---SVMNHYLTEILSLDLR-QTLEKITLGSTKEEKLLSLRIIIKKLPF 550
           K +  ++         V  ++              E        + ++  ++     +  
Sbjct: 209 KSWIDYVLPEDISNGKVNVNFYETAADQRTPDSKYEFRFRIRRPDGEIRWIKDTYFPIME 268

Query: 551 SS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
           +     ++    D++     + +L  AK+ AE+ +  KSDFLA +SHE+RTPL AI+G S
Sbjct: 269 NGKLVGFAGIAEDVTNDALREKELWEAKEFAEQANRTKSDFLAMMSHELRTPLNAILGMS 328

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
           +++K        +       + I ++G  +L ++NDLLD +K+E+GK++   E + L E 
Sbjct: 329 QILKTHNL----SDEQQGQIDVISQAGQNLLALLNDLLDFAKLEAGKLSFTEETMDLHEL 384

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII 726
           V +    + L A++K I ++  +  NIP +++ D + ++Q+ +N+LSNA+ FT  G  + 
Sbjct: 385 VMKIKGDMLLLAHKKGIQLKFDYPENIPSKVMGDAKRIRQVLVNLLSNALKFTEKG-YVQ 443

Query: 727 ISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
           ++      +     +   V+DTG+GM   +L      F QI +  Q + +G GLGL + K
Sbjct: 444 LTANCLKKDHKKMTLCFTVKDTGIGMEKTKLSSIFNRFQQINSVYQRKYDGVGLGLSIVK 503

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFP--LYDTSHP 816
            +++   G   +   P  G+    I P  L   S+P
Sbjct: 504 ELLEKMGGTISVTIEPGVGSEFTCIIPFRLQADSNP 539


>gi|253571812|ref|ZP_04849217.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
 gi|251838409|gb|EES66495.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
          Length = 599

 Score =  311 bits (796), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 103/519 (19%), Positives = 197/519 (37%), Gaps = 48/519 (9%)

Query: 313 AYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
                 E +        P+   +Y+  G L   N   L +      + +        + +
Sbjct: 107 QALQNSERILHNIYKNLPVGIELYNKDGYLLDLNKKELEMFHITHKEKVIGIN----IFE 162

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR-------ENSLAMTFIPFEKANQF 424
            P L +      + L   D   +  + +    +             + +T       +  
Sbjct: 163 NPALPE-----EIKLKIRDNEEVEFTFQYDFSKIKGYYESEKTSGFINLTTRITTLYDHD 217

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
            + +    I  +  +  I   K++        + +    G A  +     LS N      
Sbjct: 218 RQPINYLLINVDKTENTIAYNKIQEFKNFFELVGDYAKVGYAHFDA----LSRNGYALSS 273

Query: 485 FGYPVEDILRKP------FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
           +   V +    P                +VM  +L +++       L +       +   
Sbjct: 274 WYKNVGEEEGTPLPEIIGIHSHFHPEDRAVMLDFLAKVVK-GESTKLCRDVRIRRADGSY 332

Query: 539 LSLRIII-----KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
              R+ +     +             DI++ K+ +  L  AK+ AE+    KS FLA +S
Sbjct: 333 TWTRVNVLVRNYRPQDNVIEMLCINFDITQLKETEQMLIKAKEKAEEADCLKSAFLANMS 392

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HEIRTPL AI+GFS +++             +Y   I+ +  L+L +++D+LD+SKIE+ 
Sbjct: 393 HEIRTPLNAIVGFSSMLEE----AEDQEEKHQYITIIEDNNKLLLQLISDILDLSKIEAE 448

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL--ADLRSVKQIALNI 711
             ++  E V+  +  ++    +Q+  + +   +     +N+P +   +D   + Q+ LN 
Sbjct: 449 TFDIIPERVNAKQLCNDLFQAIQMKTSPQ---VELRLKDNLPELTFTSDKNRLYQVLLNF 505

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           ++NA+ FT  G  I I        EV   V+DTG+G+   + E     F ++ +      
Sbjct: 506 VTNALKFTSEG-NITIDYQI-DGNEVKFSVQDTGMGIEPEKQEAIFTRFVKLNSFI---- 559

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            GTGLGL + +++V    GK  + S P KG+      P+
Sbjct: 560 PGTGLGLSICQSIVTQLGGKIGVESEPGKGSCFWFTHPI 598


>gi|237716271|ref|ZP_04546752.1| two-component system sensor histidine kinase/response regulator
           [Bacteroides sp. D1]
 gi|262407876|ref|ZP_06084424.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|229443918|gb|EEO49709.1| two-component system sensor histidine kinase/response regulator
           [Bacteroides sp. D1]
 gi|262354684|gb|EEZ03776.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
          Length = 885

 Score =  311 bits (796), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 104/490 (21%), Positives = 184/490 (37%), Gaps = 33/490 (6%)

Query: 338 HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397
            G + +AN  FL        +DI      +    A  +    A                 
Sbjct: 267 DGTIIFANRRFLYNHGISENEDISQLKIYN---VAADMPTQEAWNERCKDVIHGGSSNFV 323

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
           A   +       +   T       +             +  +    + +++     + + 
Sbjct: 324 AHHPSKINKGILAYEGTMYNVTNDSGEESYWSFA---HDISERIRYEAQIKRLNQIMDTT 380

Query: 458 LEATSDGIAI--INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           +     GI +  IN +   +  NR           D + K    F              +
Sbjct: 381 INNLPAGIVVKEINNDFRYIYRNREAYNR-DLYKNDPVGKNDFDFYPPIVAEKKRQEDIQ 439

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNKL 571
           + +      L     G  +   ++ L     ++               DI+E +  K +L
Sbjct: 440 VATTGK--GLHWTAEGKDRNGNMIILDKRKIRVDGDELSSPIIVSIEWDITELEMIKREL 497

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
             +K+ AE   S KS FLA +SHEIRTPL AI+GFS +I               Y N ++
Sbjct: 498 QSSKEKAEMSDSLKSAFLANMSHEIRTPLNAIVGFSHLIAESD----DAEERKTYYNIVN 553

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA--ISLVQLYANEKRILIRTS 689
            +   +L ++N++LD+SKIESG +   F P SL     E     + +     + + +   
Sbjct: 554 ANNERLLQLINEILDLSKIESGTIEFSFGPASLHNLCREVHDAHIFRT---PQGVSLVYE 610

Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-SNEEVILRVRDTGVGM 748
            ++    I  D   V Q+  N++ NA+ FT  G    IS  +  ++ +++  V DTG G+
Sbjct: 611 SSDESLMIETDKNRVFQVISNLIGNAVKFTKEGS---ISYGYKLADNQIVFHVTDTGTGI 667

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
              ++ +  + F ++ N      +GTGLGL + K++V+   GK  + S   KGT      
Sbjct: 668 EPEKVGRVFERFAKLNN----HAQGTGLGLSICKSIVERLGGKISVNSEFGKGTTFTFTL 723

Query: 809 PLYDTSHPHD 818
           P Y  ++P +
Sbjct: 724 P-YTIANPAN 732



 Score = 48.9 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/281 (11%), Positives = 80/281 (28%), Gaps = 18/281 (6%)

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDI 360
           +Y       ++    ++             I  + Y+     +          Y  V   
Sbjct: 108 QYRDITQRSNVKRQLEQANLTLRAIQKVAQIGQWTYNTKQNIFH------YLGYTGVLCE 161

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
           E    L+       + + +    +   R +   +   +  + ++ N E    M    + +
Sbjct: 162 ENVQNLAIEKYVELIVEEDRQSFMEWCRVNEKELNMESISYRVRLNGE-IFYMRIQTYLR 220

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
             +   +    G      D     +    ++  L   +    + I     +G I+  NR 
Sbjct: 221 EQRSDGSFNIEGYIQNITDI----QHRRNDINTLTHAINNAKESIFAAKPDGTIIFANRR 276

Query: 481 VSKLFGYPVEDILRK--PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
                G    + + +   + V  +  T    N    +++       +        K   +
Sbjct: 277 FLYNHGISENEDISQLKIYNVAADMPTQEAWNERCKDVIHGGSSNFVAHHPSKINK--GI 334

Query: 539 LSLRIIIKKLPFSSC---YSLTMHDISEWKQEKNKLSHAKK 576
           L+    +  +   S    Y    HDISE  + + ++    +
Sbjct: 335 LAYEGTMYNVTNDSGEESYWSFAHDISERIRYEAQIKRLNQ 375



 Score = 47.7 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 24/182 (13%), Positives = 62/182 (34%), Gaps = 12/182 (6%)

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
             IL+ T+D + +++R G+ +        L+    + +L K     L + T   +     
Sbjct: 12  QRILKLTADTMLLVDRHGVCVDIEPH-CDLWFLQEDILLGKNIFELLPEYTRERVMPIFQ 70

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW--KQEKNKLS 572
            +L      +     +    E       +     P+         DI++    + + + +
Sbjct: 71  IVLEEQRSISKNFKLVLK-GETFYFKCLM----FPYDGMVLCQYRDITQRSNVKRQLEQA 125

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
           +    A ++ +    +        +  +   +G++ V+  +    L   +Y+E     DR
Sbjct: 126 NLTLRAIQKVAQIGQWTYNT----KQNIFHYLGYTGVLCEENVQNLAIEKYVELIVEEDR 181

Query: 633 SG 634
             
Sbjct: 182 QS 183


>gi|229589257|ref|YP_002871376.1| putative two-component system sensor kinase [Pseudomonas
           fluorescens SBW25]
 gi|229361123|emb|CAY47986.1| putative two-component system, sensor kinase [Pseudomonas
           fluorescens SBW25]
          Length = 1215

 Score =  311 bits (796), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 124/686 (18%), Positives = 245/686 (35%), Gaps = 44/686 (6%)

Query: 149 LWPIEGTNLYVPIDLAALPI--YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
            W  +   + V ++    P+  +     F G     ++ + R+    R    R     + 
Sbjct: 303 RWLKDHPVVKVIVNETFAPLTFFDAEGNFRGITA-DLLELIRLRTGLRFEIHRGRDLSAM 361

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
           + ++  G   +      I         L         +     +           +  + 
Sbjct: 362 IEQVDAGKVDMIGA---IVPSAEREAQLNFSRPYLENSYVLLTRKAADAPSNLEQMAGKR 418

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
            ++       ++    + + Q                        S         +    
Sbjct: 419 LAITLGNPLESLLRRDFPEVQLVKASDTFRASELLAQGQVEGAVNSLVVANYLLSSSMFQ 478

Query: 327 DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
           DK  I   + +        P+   L   +S  ++      + L  AP        +    
Sbjct: 479 DKLQISTSIGTA-------PATFALATARSATELSSILDKALLSIAPDELGVINSRWRGY 531

Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
             +  +            W   + L    I                +  +    ++ +R 
Sbjct: 532 TAASDS-----------YWRNYHQLITRIIIGTGLLLLLSLAWNAYMRRQIKHRKMAERA 580

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE--QN 504
           +  +   + +++  T   I + +R+G++ + N +  ++F    ED++ K      E  + 
Sbjct: 581 LNDQFEFMRALVNETPHPIYVRDRKGLLQTCNDSYLQVFDVKREDVIGKSALQMSEALET 640

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISE 563
                +     +++      L++       +  +    +  +              DISE
Sbjct: 641 DAEQYHADYQRVMTEGNPLILDRTLYIRGHKLTIYHWILPYRDSTGEVQGIIGGWIDISE 700

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE-VIKNQRFGPLGNPR 622
            +Q  +++  AK+ A++ +  KS FLA +SHEIRTP+ A+IG  E  +K    G L  P 
Sbjct: 701 RRQLFDEIRAAKERADEANRAKSTFLATMSHEIRTPMNAVIGMLELTLKRADQGHLDRP- 759

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                     S   +L+++ D+LDI++IESG+++L  E V+L E +   + +    A +K
Sbjct: 760 ---AIEVAYNSAKDLLELIGDILDIARIESGRLSLAPERVNLREVIESVVRVFDGLARQK 816

Query: 683 RILIRTSFANN--IPRILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTS---NEE 736
            + +   F  +     +L D    KQ+  N++SNAI FT  G   I +    T      E
Sbjct: 817 TLSLSLEFKPDRDDTEVLIDPLRFKQVLSNLVSNAIKFTERGQVNIKVEVLPTDVAQQVE 876

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           + L V DTG+G++  +  +  +PF Q  NS Q+   G GLGL + +++     G+  + S
Sbjct: 877 MKLVVEDTGIGISRDDQLRLFEPFAQADNSGQLARSGAGLGLVICRSLCAMMGGQLSLSS 936

Query: 797 TPAKGTLIEIIF------PLYDTSHP 816
            P  GT + +        PL  T  P
Sbjct: 937 VPMVGTQVHVNLKMARLQPLQTTHEP 962


>gi|323463222|gb|ADX75375.1| two-component sensor histidine kinase VicS [Staphylococcus
           pseudintermedius ED99]
          Length = 610

 Score =  311 bits (796), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 76/388 (19%), Positives = 171/388 (44%), Gaps = 29/388 (7%)

Query: 426 ENMPQNGIEPEDVDTRINKRKM--EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           + + +  +   ++  R+ + +   E E  +L S++   SDG+   +R G +   N    K
Sbjct: 236 DEIGELALAFNNLSKRVQEAQANTESEKRRLDSVITHMSDGVIATDRRGRVRIINDMALK 295

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           + G   E++        L+      +        S+ +    E+  +        ++   
Sbjct: 296 MLGKSKEEVSGHFIFDVLDLRDEFSLEELNENNDSVLIDINEEEGIIAR------VNFST 349

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
           I++   F + Y   +HD++E +Q + +              + +F+A VSHE+RTPLT++
Sbjct: 350 IVQDTGFVTGYIAVLHDVTEQQQIERE--------------RREFVANVSHELRTPLTSM 395

Query: 604 IGFSEVIKNQRFGPLGNPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
             + E ++    G   +     ++ +        ++ +VNDLL +SK+++    +  E V
Sbjct: 396 NSYIEALEE---GAWRDESIAPQFLSVTREETERMIRLVNDLLHLSKMDNETETITKEIV 452

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
             +  +++ I+  +     K                 D   + Q+  N+++NA+ ++   
Sbjct: 453 DFNMFINKIIN--RHEMAAKDTTFVRDIPRETIFTEVDPDKMTQVFDNVITNAMKYSRGE 510

Query: 723 GQIIISTTHTS-NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
            ++     H   +  + +R++D G+G+   +++K    F ++  ++  +  GTGLGL ++
Sbjct: 511 KRVEFHVKHNPVHSRLTIRIKDNGIGIPINKVDKIFDRFFRVDKARTRKMGGTGLGLAIS 570

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           K +V+A+ G+ +  S   +GT I I  P
Sbjct: 571 KEIVEAHNGRIWANSVEGQGTSIFITLP 598


>gi|301310625|ref|ZP_07216564.1| probable hybrid sensory kinase [Bacteroides sp. 20_3]
 gi|300832199|gb|EFK62830.1| probable hybrid sensory kinase [Bacteroides sp. 20_3]
          Length = 793

 Score =  311 bits (796), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 108/517 (20%), Positives = 199/517 (38%), Gaps = 52/517 (10%)

Query: 334 FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA-PKLSDNNAIKPVMLYRSD-- 390
            +  H  L +AN  +  +  Y   +          L    P L      +   +   +  
Sbjct: 25  LLDEHFTLLWANDFYYDMIGYPKEE-------YEALFHNKPDLYFKGYDEAWNILSKNVY 77

Query: 391 ----RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
                        +       +    +T    ++             + EDV  R  ++ 
Sbjct: 78  ETIANKASGYETVIQMPTRKGKRWTKITSTFTDQLQDGIPISYTVMTDVEDVMRRRIEQT 137

Query: 447 MEIEVMQLCSILEATSDGI----AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
           +           +     I       +    +L  N       G      L       L+
Sbjct: 138 I---------TYDNIPGFISKHKVHKDGSFTLLEANDKYMDFSGIDKNSFLSFSPFSRLD 188

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII---IKKLPFSSCYSLT-- 557
           + + + MN +++ +L     + +  +     K      L++    I        Y +   
Sbjct: 189 ETSRNTMNAHISCMLKG---EPVHFVIQSKDKNGNDAWLQLNGECIGWEGDEPIYLIVYI 245

Query: 558 -MHDISEWKQEKNKLSHAKKI-------AEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
            + DI+E ++ + KL    K        AE+ +  KSDFLAR+SH+IRTP+ AI+G + +
Sbjct: 246 NITDITEQRELQKKLEKQSKQLKEALKSAEQANQAKSDFLARMSHDIRTPMNAIMGMATI 305

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
            K        + R ++    I+ +  L+L ++N++LD+SKIESG++ L  +  ++ E + 
Sbjct: 306 AKAHVD---EHERILDCMEKINGASKLLLSLINEVLDMSKIESGRLILSEDEFNVGELLQ 362

Query: 670 EAISLVQLYANEKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
           + + ++Q     K+  +     N     +  D + +KQ+ +NILSNAI +TP  G+I I 
Sbjct: 363 DLVVMMQPEIKNKQQTLNIHVKNLRHENVKGDTQRIKQVLMNILSNAIKYTPENGRITIE 422

Query: 729 TTHTSN----EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
               +             D G GM    L+K  +PF +  + +  R +GTGLG+ ++  +
Sbjct: 423 IYEKAPHNGIGNYQFVFEDNGRGMKPEFLDKIFEPFERASDDEIKRIQGTGLGMSISHKI 482

Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPLY-DTSHPHDCI 820
           +    G   + S   KG+   I  PL      P D I
Sbjct: 483 IQMMGGDIKVESEYGKGSRFTIDMPLVCRDQKPDDKI 519


>gi|223043418|ref|ZP_03613464.1| sensor protein YycG [Staphylococcus capitis SK14]
 gi|222443207|gb|EEE49306.1| sensor protein YycG [Staphylococcus capitis SK14]
          Length = 610

 Score =  311 bits (796), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 78/388 (20%), Positives = 171/388 (44%), Gaps = 29/388 (7%)

Query: 426 ENMPQNGIEPEDVDTRINKRKM--EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           + + +  +   ++  R+ + +   E E  +L S++   SDGI   +R G +   N    K
Sbjct: 237 DEIGELALAFNNLSKRVQEAQANTESEKRRLDSVITHMSDGILATDRRGRVRIANDMALK 296

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           + G   ED++       L       ++       S  L    E+  +        ++   
Sbjct: 297 MLGLAKEDVIGYYMLGLLNLENEFSLDEIQENNDSFLLDINEEEGIIAR------VNFST 350

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
           I+++  F + Y   +HD++E +Q + +              + +F+A VSHE+RTPLT++
Sbjct: 351 IVQETGFVTGYIAVLHDVTEQQQVERE--------------RREFVANVSHELRTPLTSM 396

Query: 604 IGFSEVIKNQRFGPLGNPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
             + E ++    G   +     ++ +        ++ +VNDLL +SK+++    +  E V
Sbjct: 397 NSYIEALEE---GAWQDESLAPQFLSVTREETERMIRLVNDLLQLSKMDNESDQITKEIV 453

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
             +  +++ I+  +     K                 D   + Q+  N+++NA+ ++   
Sbjct: 454 DFNMYINKIIN--RHEMAAKDTTFVREIPQQTIFTEIDPDKMTQVFDNVITNAMKYSRGD 511

Query: 723 GQIIISTTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
            ++       +    + +R++D G+G+   +++K    F ++  ++  +  GTGLGL ++
Sbjct: 512 KRVEFHVKQNALYNRMTIRIKDNGIGIPINKVDKIFDRFYRVDKARTRKMGGTGLGLAIS 571

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           K +V+A+ G+ +  S   +GT I I  P
Sbjct: 572 KEIVEAHNGRIWANSVEGQGTSIFITLP 599


>gi|99082614|ref|YP_614768.1| histidine kinase [Ruegeria sp. TM1040]
 gi|99038894|gb|ABF65506.1| histidine kinase [Ruegeria sp. TM1040]
          Length = 761

 Score =  311 bits (796), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 105/449 (23%), Positives = 189/449 (42%), Gaps = 22/449 (4%)

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
           L++  A +      ++R      A L           A+       A Q      +N  E
Sbjct: 3   LAEKLAQERRARLAAERLLELKQAELTDANRKLGR-HALALTKRIGATQAEIATFKNENE 61

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
               D      K+E    +L   ++A  DG A  + +  ++  N A   +F    E    
Sbjct: 62  KVKSDLNTANEKVEQAERRLWHSIQAFQDGFAFFDSDSKLIGANTAYLNIFEGVEEVSPG 121

Query: 495 KPFTVFLEQ-------NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
             +   L+        +T  +       +++        + T+     ++ L L   I +
Sbjct: 122 VSYVRILQILTDEGLIDTEELSADSWRAMMTERWMSPAPEPTVVRLWNDRYLKL---IDQ 178

Query: 548 LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
                       DI+     + +L  A++ AE  +  KS FLA +SHEIRTP+  ++G +
Sbjct: 179 RGHDGDIVSLALDITATVHYEEELRSARERAEAANRAKSAFLANMSHEIRTPMNGVVGMA 238

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
           E++ +             YAN I  SG  +L I+ND+LD SKIE+ K+ LH E   L+  
Sbjct: 239 ELLSDTTL----TEEQRLYANTIKNSGEALLVIINDVLDYSKIEADKLALHPEAFDLEAC 294

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII 726
           + E + L+Q  A +K + +   +   +P   + D   ++QI  N++ NAI FT  G  + 
Sbjct: 295 MHEVVMLLQANARDKGLTLLVDYDLFMPTNFIGDPGRIRQILTNLIGNAIKFTNEG-HVT 353

Query: 727 ISTTHTSNEE-----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
              T   + E     + + + D+G+G+ + +++     F Q+ +    + EGTGLGL + 
Sbjct: 354 ARVTGVPHPEDNTVMLHISIEDSGIGIPDDKIQHIFGEFNQVEDETNRQFEGTGLGLAIT 413

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           + ++    G+ ++ S   KG+      PL
Sbjct: 414 ERLIKLMDGEIWVESQLGKGSCFGFRLPL 442


>gi|165920276|ref|ZP_02219548.1| putative aerobic respiration control sensor protein arcB [Coxiella
           burnetii RSA 334]
 gi|165916832|gb|EDR35436.1| putative aerobic respiration control sensor protein arcB [Coxiella
           burnetii RSA 334]
          Length = 630

 Score =  311 bits (796), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 103/504 (20%), Positives = 195/504 (38%), Gaps = 43/504 (8%)

Query: 313 AYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
              +  +      +D+      + +   ++   N +   L + K    I           
Sbjct: 13  KLMESQQAQFEHLIDRADDLVVIVNPDYSIIDLNNAAEQLYQCKREAVIGRN-------- 64

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
                        +   +        A L T + + +           +  Q    +   
Sbjct: 65  -------------LFEIAVEEEWQLPASLLTHRRSIKRISWSVVSLPPRYGQKGYMLTGQ 111

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-PVE 490
            I      ++I           L +IL      I   +R  + L  N   +KL G+   E
Sbjct: 112 VISKSVNASQI----------FLENILYNIPQYILWKDRNFVYLGCNHNFAKLVGFETPE 161

Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
            I+ K           + +     E+L       +E+       +E +  +  +  +   
Sbjct: 162 SIIGKTDFDLWRSQGANSIRPTDVEVLEGKQLVDVEQSLSLPNGKEGVFLISKVPLRDER 221

Query: 551 SS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
           +      +   DI+E KQ + KL  AK  AE     KS+F+A +SH+ RTP+  I+G ++
Sbjct: 222 NEIIGILVVGTDITERKQNEQKLIEAKLKAELSDRAKSEFIANISHDFRTPINGILGIAQ 281

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
           +           P      N +  S NL+L +V D+LD +++E GK+ L +   +L + V
Sbjct: 282 IFNMHEHTKKQEP----LINDLSASANLLLGLVEDILDFARLEVGKLELKYSTFNLRQLV 337

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIII 727
           +  +        +K+I I   +  ++P  I+++   +++I LN++ NA+ FT  G QI +
Sbjct: 338 TFLVKTFSFQTQQKQIKINVYYDASLPDSIVSEPNYIRRIFLNLIGNAVKFTEKG-QIDV 396

Query: 728 STTHTSN--EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
           +     N    + + V+DTG+G+   +L      F +       R EG GLGL + K +V
Sbjct: 397 TVNLEGNKPAMLKILVKDTGIGIPKDKLNTIFDRFSRATPVYSSRYEGLGLGLSIIKRLV 456

Query: 786 DANMGKFYIFSTPAKGTLIEIIFP 809
           D   G+ ++ S   +G+   +  P
Sbjct: 457 DNLGGEVHVSSIENEGSTFTLTIP 480



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/100 (15%), Positives = 36/100 (36%)

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
             + K+ ME +  Q   +++   D + I+N +  I+  N A  +L+    E ++ +    
Sbjct: 8   ESVRKKLMESQQAQFEHLIDRADDLVVIVNPDYSIIDLNNAAEQLYQCKREAVIGRNLFE 67

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
              +    +    LT   S+               ++  +
Sbjct: 68  IAVEEEWQLPASLLTHRRSIKRISWSVVSLPPRYGQKGYM 107


>gi|182412192|ref|YP_001817258.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
 gi|177839406|gb|ACB73658.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
          Length = 695

 Score =  311 bits (796), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 101/578 (17%), Positives = 217/578 (37%), Gaps = 31/578 (5%)

Query: 236 MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN 295
           +++   +       +     +     L     +   +     +       + Y   ++  
Sbjct: 5   LESLPVAEGAQLRDRLLTATSLAAATLVGGTDAASFRAALRVLGEAAEVDRVYVFEIRRE 64

Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYK 355
           +       +  +             +    +   P+    Y  G       +   +    
Sbjct: 65  ADGR----ALCSQRHEWCAPGVTPQINNPDLQDLPLAEAGY--GRWLQRFTADQPVFG-- 116

Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
              ++             +   +  + PV + R+    I        I+W R     +  
Sbjct: 117 ---EVSGFPAAERQFLEAQSIVSLVVMPVQIDRALWGFIGFDDCSGRIKWTRGAIECLRI 173

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
                               + ++ R  + ++  +  QL   + +  D +   +  G   
Sbjct: 174 TA-----------RVLAGAIDRMNYRRRRDEVLADHEQL---IASLDDVVFRFDDRGCWT 219

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
             + A  +  G+   + L +P   +++ +   ++     +++    +Q+         ++
Sbjct: 220 FLSPAWQQRLGWTAGECLGQPAVRYVQPSDRGLVLRSWKQVV-TGRQQSFRGEVRFHQRD 278

Query: 536 EKLLSLRIIIKKLPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
                + +  +              T+ D++  K+ + +L  A+  AE  S  KS+FL+ 
Sbjct: 279 GGCRWMLVSARAQRGEDGRVTGVTGTLTDVTAAKRAEAELIAARTAAEAASKAKSEFLST 338

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           +SHE+RTPL A+IG +E +  +    +   R   Y   I  SG  +L  +ND+LD+++IE
Sbjct: 339 MSHELRTPLNAVIGLAESLL-EAGEAMEAARVRRYLEIIHTSGRQLLAQINDILDLARIE 397

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
           +G+         L  A +E +  ++  A  K +   T   +    + AD R ++Q   N+
Sbjct: 398 AGRTMPEPALFDLAAAAAELLESLRYEAQGKGLTTATHRPDAPLLVHADERLIRQALSNL 457

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           LSNA+ FTP+GG + ++   T    V + VRD+G+G+   +  +  +PF QI  S     
Sbjct: 458 LSNALKFTPAGGAVDLTVEPTPAGGVRVAVRDSGIGIAPEKHARLFRPFSQIDGSLSRPH 517

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            GTG+GL L + +   + G+  + S P +G+   +  P
Sbjct: 518 GGTGVGLALVERIARLHGGRVAVSSAPGQGSTFSLDLP 555



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/253 (7%), Positives = 51/253 (20%), Gaps = 13/253 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN--TW 143
            +  D  G    +S    + +G  A + +G                     +      ++
Sbjct: 209 VFRFDDRGCWTFLSPAWQQRLGWTAGECLGQPAVRYVQPSDRGLVLRSWKQVVTGRQQSF 268

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
            G+      +G   ++ +  +A      +   +G  G   +          A        
Sbjct: 269 RGEVRFHQRDGGCRWMLV--SARAQRGEDGRVTGVTG--TLTDVTAAKRAEAELIAARTA 324

Query: 204 FSHLHEIKKGHSSVEKEKYDI-------FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256
                + K    S    +           ++        M+           H       
Sbjct: 325 AEAASKAKSEFLSTMSHELRTPLNAVIGLAESLLEAGEAMEAARVRRYLEIIHTSGRQLL 384

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
            +   +         +        +                +     +  + P       
Sbjct: 385 AQINDILDLARIEAGRTMPEPALFDLAAAAAELLESLRYEAQGKGLTTATHRPDAPLLVH 444

Query: 317 EGENLTPETVDKC 329
             E L  + +   
Sbjct: 445 ADERLIRQALSNL 457


>gi|149174179|ref|ZP_01852807.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797]
 gi|148847159|gb|EDL61494.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797]
          Length = 739

 Score =  311 bits (796), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 121/561 (21%), Positives = 208/561 (37%), Gaps = 65/561 (11%)

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEI 362
                          N   E ++      +V         + N   L    Y     +  
Sbjct: 28  SPQQSEQDQRVQPHLNAFGEILEHSLNEIYVVEVETFRFVHVNHGALANIGYT----LAE 83

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
              +S L   P+ +  +  + +     + T           + +             +  
Sbjct: 84  LQEMSPLEITPEHTPASIERLLAPLL-NGTVKHIEFETVHRRKDGSLY---PVELHIQLA 139

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQ----------LCSILEATSDG-------- 464
           +  E      I  +  + +  +  + +   Q          L  +LE    G        
Sbjct: 140 KLGERSVFVAIVLDISERKR-EAALTLSRNQVYKQLASSVPLEKVLETIVLGVESYSPEM 198

Query: 465 ---IAIINREGIILSTNRAVSKLFGYPVED-----------------ILRKP--FTVFLE 502
              I +++  G  L        L GY +E                     +P      LE
Sbjct: 199 ICSILLLDESGQYLQP-GVAPSLPGYYIEATSPFKIGPAKGSCGTAAFHNRPVFIDNVLE 257

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD-- 560
                 M   +             +   G       +  +              T     
Sbjct: 258 HRNWEPMRELVKRTGLKACWSVPIRSRRGKVLGTLAMYYQSHKLPELAERELIETTAYLA 317

Query: 561 --ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
             + E  Q  ++L  AK+ AE  +  KS+FLA +SHEIRTP+TAI+GF++++ N     L
Sbjct: 318 GIVIERFQAISQLQQAKEAAEAANRSKSEFLANMSHEIRTPMTAILGFTDILIND----L 373

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
                IE    I ++G  +L ++ND+LD+SKIE GK+++ +   S  E V++ ISL+Q+ 
Sbjct: 374 NQTEEIEVVRTIHQNGEYLLGLINDILDLSKIEDGKLDVEWLDCSPHEIVNDVISLLQVR 433

Query: 679 ANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ---II-ISTTHTS 733
           A  K I +  +F   +P  I  D   ++QI +N++ NAI FT  G     I  +S   + 
Sbjct: 434 AVAKGIPLEVNFEGPVPELIHTDPARLRQILINLIGNAIKFTEHGSVQLVIRLVSNQQSD 493

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
            +++   V DTG+G+   ++E    PF Q  +S   +  GTGLGL + K +V+   G   
Sbjct: 494 QQKLHFDVFDTGIGIAAEQIENLFLPFTQADSSTTRQYGGTGLGLAICKRLVELLGGTIQ 553

Query: 794 IFSTPAKGTLIEIIFPLYDTS 814
           + ST  KG+   +I P+ +  
Sbjct: 554 VSSTVGKGSTFSVIIPVGEVD 574


>gi|170732652|ref|YP_001764599.1| signal transduction histidine kinase with CheB and CheR activity
            [Burkholderia cenocepacia MC0-3]
 gi|169815894|gb|ACA90477.1| signal transduction histidine kinase with CheB and CheR activity
            [Burkholderia cenocepacia MC0-3]
          Length = 1220

 Score =  311 bits (796), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 116/678 (17%), Positives = 228/678 (33%), Gaps = 23/678 (3%)

Query: 144  YGKTTLWPIEGTNLYVPID-LAALP----IYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
                     E     + +   A  P    +  R    SG  GF       +     A  +
Sbjct: 411  RNLLIYLRKEAQQHVLEVLHYACRPNGFMLLGRAEAVSGADGFEHAGAPHLYRKVPAAKR 470

Query: 199  RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
               +    +  ++   S           Q  P      +  +   +      DD      
Sbjct: 471  --QQGAFPIDALRPWASQGTAPSVRRAQQPDPILEAANRAALERYSPPGFVVDDKGDVVH 528

Query: 259  YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE- 317
            +    S   +    E    + L +  + +   T++    E+           ++      
Sbjct: 529  FRGDVSGFVAPASGEAS--LALPRLLQPELNVTVRTALIEAKRTNQPVRRERVALGDQHF 586

Query: 318  GENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
               + P T D     F V        A       T   +         L   +       
Sbjct: 587  ALEVLPLTADDLVPHFLVTMERLPDLAPGRHGASTGAGATGA--RVQELERTVTTLSDEL 644

Query: 378  NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
                  +    ++        R    +    N    +        +         +   +
Sbjct: 645  EATQAQLKTVVAEFESANEELRTANEEMLSTNEELQSANEELMLAKQELESTNQELASLN 704

Query: 438  VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
             +     ++++     L +++E     + +++R+  +   +     LFG   + +  +P 
Sbjct: 705  DELNSRNQQLDRANDDLSNLVEGIPLPVVVLDRQLRLRHFSPQAQTLFGLSDDSV-GQPM 763

Query: 498  TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYS 555
                   + +     L  ++   ++   +        E +   + +   +          
Sbjct: 764  AQQNSLFSAAD----LERVVQSAVQGLADVEHEYQDSEGRWWLVNVRAYRTADDRIDGAV 819

Query: 556  LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK--NQ 613
            L   DI   K+       A+  AE+ ++ K +FLA VSHE+R+PL  I G++ V+    +
Sbjct: 820  LAFQDIDALKRALGTAQSARDEAERANTAKDNFLALVSHELRSPLNVISGWAAVLMTARE 879

Query: 614  RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
            R               I R   L  ++++DLLD+S+I SG+ +L  +PV    AV   + 
Sbjct: 880  RGVSTDEEMSQRAVTTILRHCQLQAELIDDLLDVSRISSGRFSLDTKPVDFAAAVRTVVE 939

Query: 674  LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
              +  A +K+I + ++       +  D R ++Q+A N+L NA+ FTP GG++ ++ T   
Sbjct: 940  SNRPAAEKKQITLVSAGLQGRAIVSGDARRLQQVASNLLGNALKFTPDGGRVEVALT-QL 998

Query: 734  NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
               V L V D G+G+    L +    F Q   ++     G GLGL + K +V A+ G   
Sbjct: 999  GTLVELSVTDNGIGVKAELLPRLFDRFMQSDITRTRNYGGLGLGLSIVKHLVSAHGGTVT 1058

Query: 794  IFST-PAKGTLIEIIFPL 810
              S    +GT + +  PL
Sbjct: 1059 ASSEGEGRGTRLTVRLPL 1076


>gi|303246324|ref|ZP_07332604.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           fructosovorans JJ]
 gi|302492387|gb|EFL52259.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           fructosovorans JJ]
          Length = 796

 Score =  311 bits (796), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 91/560 (16%), Positives = 189/560 (33%), Gaps = 51/560 (9%)

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQ--NNSKESFEYLSHRNHPSLSAYFDEGE--NLTPET 325
           P ++            +     L+  +   E    ++      L+   +         + 
Sbjct: 260 PVRKMMRATRAIAAGGEFTGVDLRQCDEMGELGRAITTMGREVLAKQAELARQMKRYQDL 319

Query: 326 VDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
            +  P    V      L   N  F                G         L       PV
Sbjct: 320 FEHVPCVITVQDKDLRLVSYNQFFAGEFHASP--------GQYCYKAYKGLDAPCPGCPV 371

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
           M    D   +  +    T+  +     +         +          +  +   ++  +
Sbjct: 372 MRTFKDG--LPHATEEITLDKDGNP-RSFFVSTAPMPDADGNIATVMEMSLDITASKYLE 428

Query: 445 RKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            ++E    +  +I       + +++R +  IL  N    +++GY   +++ + F      
Sbjct: 429 AELERSRKKYLAIFSCIPTALFVLDREDLTILECNATAEEVYGYTQAELIGQNFLDLFYN 488

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL--PFSSCYSLTMHDI 561
              S     + E  ++D             K   ++ + I +     P S  Y ++  DI
Sbjct: 489 RDRSGHERSIRERHAIDRA-------RHCRKSGAIIYVSIRVSTTTFPDSQVYLVSATDI 541

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN--QRFGPLG 619
           +   + + +L  A K+A        +    V+HE+  P+T I   SE +    +R  P+ 
Sbjct: 542 TRRLETEQQLIQASKMAT-----LGEMATSVAHELNQPMTVIQTISEYLMRKTRRGEPVS 596

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
              + E A  I +       I+  + +  +    K +L   PV+L + +   +       
Sbjct: 597 PELFQEMAEGIGKHIARATRIITHMREFGR----KSDLTVGPVNLGDVLMHTMEFFNQQL 652

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG---------QIIISTT 730
             + I + T  A ++P + AD   ++Q+ +N+L NA       G         +I +   
Sbjct: 653 KVRNIEVATDIAPDLPPVSADAGRLEQVFMNLLLNARDAIEERGPAAGGKTEKRITLRV- 711

Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
           +   ++V   + DTG G+     +K  +PF          G+GTGLGL ++  ++    G
Sbjct: 712 YRDGDQVAAAIADTGPGIAPDIQDKIFEPFFTTKP----VGKGTGLGLSISYGIIKDYGG 767

Query: 791 KFYIFSTPAKGTLIEIIFPL 810
              + S P +G    +  P+
Sbjct: 768 TIEMASEPGQGARCIVRLPI 787



 Score = 41.9 bits (97), Expect = 0.42,   Method: Composition-based stats.
 Identities = 22/246 (8%), Positives = 64/246 (26%), Gaps = 9/246 (3%)

Query: 86  TWNIDAHG-YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144
            + +D     + E +    +  G    ++IG    D+    + D + H   + +R     
Sbjct: 449 LFVLDREDLTILECNATAEEVYGYTQAELIGQNFLDLF--YNRDRSGHERSIRERHA--I 504

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRAL--GKRLDK 202
            +       G  +YV I ++                  I      +           L +
Sbjct: 505 DRARHCRKSGAIIYVSIRVSTTTFPDSQVYLVSAT--DITRRLETEQQLIQASKMATLGE 562

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
             + +        +V +   +   +++             + E               + 
Sbjct: 563 MATSVAHELNQPMTVIQTISEYLMRKTRRGEPVSPELFQEMAEGIGKHIARATRIITHMR 622

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
                S       +  ++  +T + +   L+  + E    ++    P  +      +   
Sbjct: 623 EFGRKSDLTVGPVNLGDVLMHTMEFFNQQLKVRNIEVATDIAPDLPPVSADAGRLEQVFM 682

Query: 323 PETVDK 328
              ++ 
Sbjct: 683 NLLLNA 688


>gi|255263227|ref|ZP_05342569.1| sensory box histidine kinase/response regulator [Thalassiobium sp.
           R2A62]
 gi|255105562|gb|EET48236.1| sensory box histidine kinase/response regulator [Thalassiobium sp.
           R2A62]
          Length = 835

 Score =  311 bits (796), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 89/490 (18%), Positives = 186/490 (37%), Gaps = 18/490 (3%)

Query: 341 LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA-----PKLSDNNAIKPVMLYRSDRTCIA 395
           +   NP+        S   +     +           P L    A    ++     + + 
Sbjct: 99  IVRQNPTSQDYLNDVSAFLVNSVPIIDASDAEITQELPALQTTTADIRPVVRALSNSGLD 158

Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
             A     Q        M              +    +   +      +++      ++ 
Sbjct: 159 IFAEKSDNQRQAVARTMMQLAIAIATLIGALALTVWFLNRSNASISRREQEKNQTSERMN 218

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           +++  + DG+ + +  G I+  N A   +FG+   D+L       +              
Sbjct: 219 TVMGTSLDGVIVTDSNGQIIEFNPAAETIFGHRKLDVLGLDIIDLIIPKHIQNTLDLGGN 278

Query: 516 ILSLDLRQTL----EKITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKN 569
               + ++ +             +  +  + + ++         Y   + DIS    ++ 
Sbjct: 279 RAQTNDKRRVVGQGRVKLEAKHFDGSVFPVELAVQSAKTDQGEIYIAFIRDISRRVADEA 338

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  A+  A      K+DFLA +SHEIRTPL  ++G   ++++       +     Y  Y
Sbjct: 339 ELVMARDKALAGEKLKTDFLATMSHEIRTPLNGLLGNMSLLRDTHLDTAQD----RYVGY 394

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           ++ SG L+++ ++D+LDI++ ++GK++    PV++   + + +      A++    +   
Sbjct: 395 METSGRLLMNHISDVLDITRYDAGKLDTRLGPVNISALLQDIVDNQSSAASKHETSLTWK 454

Query: 690 -FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ-IIIS-TTHTSNEEVILRVRDTGV 746
             +     IL+D   ++ + +N++ NA+ FT  G   I +       N  + ++++DTG 
Sbjct: 455 WLSEETSWILSDHDRLQHVMINLIGNAVKFTKRGRVDITVEEIKEHDNPTLQIQIKDTGP 514

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           GMT   ++     F     S      GTGLGL +AK  V+A  G   + S    G+   +
Sbjct: 515 GMTEDLVKSVFDDFVTGDTSYHRDVSGTGLGLSIAKRFVNALGGDIRVESKAGFGSTFWV 574

Query: 807 IFPLYDTSHP 816
             PL   + P
Sbjct: 575 TLPLIPATAP 584



 Score = 40.4 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/144 (11%), Positives = 40/144 (27%), Gaps = 13/144 (9%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH----IDPNNHIGDLLKRQNTWY 144
            D++G + E +       G+    ++G+ + D+    H    +D   +      ++    
Sbjct: 231 TDSNGQIIEFNPAAETIFGHRKLDVLGLDIIDLIIPKHIQNTLDLGGNRAQTNDKRRVVG 290

Query: 145 GKTTLW---PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
                      +G+    P++LA     +   E         +          A      
Sbjct: 291 QGRVKLEAKHFDGS--VFPVELAVQSAKTDQGEIY----IAFIRDISRRVADEAELVMAR 344

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIF 225
            K     ++K    +    +    
Sbjct: 345 DKALAGEKLKTDFLATMSHEIRTP 368


>gi|182414748|ref|YP_001819814.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
 gi|177841962|gb|ACB76214.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
          Length = 806

 Score =  311 bits (796), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 82/387 (21%), Positives = 156/387 (40%), Gaps = 18/387 (4%)

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCS----ILEATSDGIAIINREGIILSTNRAVSK 483
           +               ++  E +  +L +    IL+  +DG   I+  G +   NR   +
Sbjct: 281 LLILIGARLVSALERKRKAAEQQREELNARTNQILDNINDGFFAIDGAGRLTHVNRQAEE 340

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           L+G    D++ +      E +             +L  R+             +   + +
Sbjct: 341 LWGRGRADLIGQ---ALPEDSLGPPALDLGAHAEALRDRKPRHYEVFA-EPLGRWFDVSL 396

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
                  +   +    DI+  K  +  L  AK  AE+ +  KSDFLA +SHE+RTPL  +
Sbjct: 397 YP---EETGGLACFFRDITHRKSVEAALVQAKDEAERANRAKSDFLATLSHELRTPLAPV 453

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +     ++     P        +   I R+  L + +++DLLD++++E GK+ L    V 
Sbjct: 454 MLTLPYVETH---PELPAELRSHVESIRRNVELEIRLISDLLDLTRVERGKLQLEKTEVD 510

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
           L   +   + + +     + + I    A     +  D   + Q+  N+L+NA  FT   G
Sbjct: 511 LHGVLHSVVEICR---EAESVPITLELAATRHYVHGDPARLHQVFWNLLTNAQKFTDRSG 567

Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
           +I++ T       + + V DTGVG+T     +    F Q  +    +  G GLGL + + 
Sbjct: 568 RIMVLTRQAEGHAISVSVTDTGVGLTPELRSRLFVAFEQGESKSARQKGGLGLGLAICRK 627

Query: 784 MVDANMGKFYIFST-PAKGTLIEIIFP 809
           +++ + G    +S    +G    ++ P
Sbjct: 628 ILEMHAGTITAWSEGTGRGATFTVVLP 654



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/267 (8%), Positives = 63/267 (23%), Gaps = 16/267 (5%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK 146
           + ID  G L  ++ +  +  G     +IG  L + S            + L+ +     K
Sbjct: 323 FAIDGAGRLTHVNRQAEELWGRGRADLIGQALPEDSLGPPALDLGAHAEALRDR-----K 377

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
              + +    L    D++  P        +                  A   +   +   
Sbjct: 378 PRHYEVFAEPLGRWFDVSLYP--EETGGLA-----CFFRDITHRKSVEAALVQAKDEAER 430

Query: 207 LHEIKKGHSSVEKEKYD--IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
            +  K    +    +    +       P++    ++ +    +          +  L++ 
Sbjct: 431 ANRAKSDFLATLSHELRTPLAPVMLTLPYVETHPELPAELRSHVESIRRNVELEIRLISD 490

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
                  +     +   +        ++    +E+          +   Y         +
Sbjct: 491 LLDLTRVERGKLQLEKTEVDLHGVLHSVVEICREAESVPITLELAATRHYVHGDPARLHQ 550

Query: 325 TV-DKCPIPF-FVYSHGNLFYANPSFL 349
              +       F    G +        
Sbjct: 551 VFWNLLTNAQKFTDRSGRIMVLTRQAE 577


>gi|326204683|ref|ZP_08194539.1| multi-sensor signal transduction histidine kinase [Clostridium
           papyrosolvens DSM 2782]
 gi|325985250|gb|EGD46090.1| multi-sensor signal transduction histidine kinase [Clostridium
           papyrosolvens DSM 2782]
          Length = 598

 Score =  311 bits (796), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 80/361 (22%), Positives = 167/361 (46%), Gaps = 26/361 (7%)

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYP-VEDILRKPFTVFLEQNTPSVMNHYLT 514
           +++ +  +GI  I+    I+  N     +F       I+ K     ++    S +N  L 
Sbjct: 258 TVINSMRNGIIAIDNNSKIIIINATACDMFDVQYGPGIIGKNL---IDITRNSKVNSLLR 314

Query: 515 EILSLDLRQTLEKITLGSTKE-EKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKN 569
           E +  D     E +    +   +K+  +     K        +   +T++DI+  ++ + 
Sbjct: 315 ETIKNDSSLIDEIVMFSPSLGIDKIYRIYTNTIKSSDGKHQTAGAVITLNDITSVRKLE- 373

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
                          +++F++ V+HE++TPLT+I GF E +KN           +++ + 
Sbjct: 374 -------------QIRTEFVSNVTHELKTPLTSIRGFVETLKNGAIEDTTVA--VKFLDI 418

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           ID     +  ++ND+L +S+IE+ + +     + L + + E + +++  A++K IL+  S
Sbjct: 419 IDIEAERLYTLINDILQLSEIEAMRKDDSVMEIDLRQIIDEVVLILKSSADKKNILLEVS 478

Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749
              +  +I+A    +KQ+ +N++ NAI +    G+I +      N   ++ ++DTG+G+ 
Sbjct: 479 TVPSHIQIIASRNRIKQMLINLIDNAIKYNVENGKICVKAEKN-NGNTVISIKDTGIGIP 537

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
                +  + F ++   +     GTGLGL + K +++   G  +I S P KGT   +  P
Sbjct: 538 EMHHSRIFERFYRVDKGRSRNMGGTGLGLSIVKHIINLYSGDIHIISEPGKGTEFIVKLP 597

Query: 810 L 810
           L
Sbjct: 598 L 598


>gi|163849065|ref|YP_001637109.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222527035|ref|YP_002571506.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
 gi|163670354|gb|ABY36720.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222450914|gb|ACM55180.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
          Length = 705

 Score =  311 bits (796), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 88/553 (15%), Positives = 186/553 (33%), Gaps = 26/553 (4%)

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
            LP         L           L        +        +  A   E E        
Sbjct: 154 RLPTTTPLLESPLAYAVTMLVILLLAGTILSVADIQLVTAIKATRAKNIERERAEQ---- 209

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
           +          G   +   +  +    ++   + +      L     +   +      L 
Sbjct: 210 QLRQALLAARAGAWEWDAVNRTIRWSPENYPLLGMNPDQDRLNFRTWIERVHPDDRQALQ 269

Query: 388 RSDRTCIAAS---ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
            +    I      A    + W   +   +  I               G++ +    +  +
Sbjct: 270 EAIDRAIHGRQEFAVEFRVIWPDGSIHWLRGIGQPLVQPDGSVQGMYGLQIDITAQKAIE 329

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            ++    +   +++E     +     +G +   N    + F    ++++   F   +   
Sbjct: 330 IELARSELYYRTLVEDLPALVCRFRADGTLTFVNDLYCQTFQRSRDELIGFNFYELIPPE 389

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHD 560
               +   +  +     + T+E        +  +   R + + L         Y     D
Sbjct: 390 QRERVAADIALL--SREQPTIEHEHEVIHPDGSIGWQRWVNRLLFDEYGEPFEYQAVGMD 447

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I+  K+ + +  H  +     +S    F   VSH++++PL  I GF+  I  +       
Sbjct: 448 ITVRKRAEIEREHLLRELTARNSELEQFTYTVSHDLKSPLITIKGFAGYI-ERDLAAGRL 506

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
            R       I  + + +  ++ DLL++S+  +G+       + L   +SEA + V     
Sbjct: 507 ERIPADIQRIKVAADRMYQLLEDLLNLSR--AGRQLNQPSRIGLGLLISEAAAAVSGRLA 564

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT--PSGGQIIISTTHTS-NEEV 737
           E+ + +      N+P I  D   ++++  N++ NA  F       QI I          V
Sbjct: 565 ERNVYL--HLPPNLPEIYGDRTRLREVFQNLIDNAAKFMGDQPNPQIWIEARRADLPGFV 622

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
           ++ VRD G+G+    L++    F ++      + +GTG+GL LA+ +V+A+ GK ++ S 
Sbjct: 623 LVSVRDNGIGIEPRYLQRVFGLFERLNA----QVDGTGIGLALARRIVEAHGGKIWVESE 678

Query: 798 -PAKGTLIEIIFP 809
              KGT   +  P
Sbjct: 679 GLGKGTTFYLTLP 691



 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/244 (9%), Positives = 63/244 (25%), Gaps = 10/244 (4%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN-TWYGKTTL 149
           A G L  +++   +T      ++IG    ++      +       LL R+  T   +  +
Sbjct: 355 ADGTLTFVNDLYCQTFQRSRDELIGFNFYELIPPEQRERVAADIALLSREQPTIEHEHEV 414

Query: 150 WPIEGTNLY-VPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
              +G+  +   ++     ++    E   ++  G+     V        + L ++ +  +
Sbjct: 415 IHPDGSIGWQRWVN---RLLFDEYGEPFEYQAVGM--DITVRKRAEIEREHLLRELTARN 469

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD-DVLKTEKYPLLTSEES 267
              +  +                    ++  +++        D   +K     +    E 
Sbjct: 470 SELEQFTYTVSHDLKSPLITIKGFAGYIERDLAAGRLERIPADIQRIKVAADRMYQLLED 529

Query: 268 SLPEQEDFHTINLNQY--TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
            L        +N                  S    E   + + P              E 
Sbjct: 530 LLNLSRAGRQLNQPSRIGLGLLISEAAAAVSGRLAERNVYLHLPPNLPEIYGDRTRLREV 589

Query: 326 VDKC 329
               
Sbjct: 590 FQNL 593


>gi|299535467|ref|ZP_07048789.1| alkaline phosphatase synthesis sensor protein [Lysinibacillus
           fusiformis ZC1]
 gi|298729228|gb|EFI69781.1| alkaline phosphatase synthesis sensor protein [Lysinibacillus
           fusiformis ZC1]
          Length = 511

 Score =  311 bits (796), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 81/365 (22%), Positives = 162/365 (44%), Gaps = 26/365 (7%)

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
           E+E  +L +++E     + +I REG I   NR   + FG  ++D+  K F       +  
Sbjct: 168 EVEEERLKTLIENMGSSLMMIGREGNISIVNRVFLERFGMQLDDVQGKVFRTIGLPKSLE 227

Query: 508 VMNHYLTEIL---SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564
               ++          ++  +++           +     I          + MHDI+E 
Sbjct: 228 QFIDHVFLTEMPYRQQIKMEVQQELYNKEVYGAPV-----IGDHGRWLGVVIVMHDITEL 282

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
            + +                + DF+A VSHE+RTP+T+I GFSE + +  +        I
Sbjct: 283 VRLE--------------QIRKDFVANVSHELRTPITSIKGFSETLLDGAY--KDEKMLI 326

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
            +   I +  N +  ++ DLL++SKIE     ++  P+ L + +     L     +EK +
Sbjct: 327 SFLEIIYKESNRLQMLIQDLLELSKIEQHGFTVNIMPMGLQDVLIRGAELTAPRLDEKNM 386

Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744
             +     ++ +++ D   + QI  N+++NAI ++P    + I         + + + D 
Sbjct: 387 SFQVDIERDV-QVMGDANRIIQIVTNLITNAITYSPENTTVSIRLKENETHGI-IEIEDQ 444

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G+  +E+ +  + F ++  ++     GTGLGL + K +V+A+ G+  + S    GT +
Sbjct: 445 GIGIEKHEIARVFERFYRVDRARSRNSGGTGLGLAIVKHLVEAHHGRIQVESEVGIGTKM 504

Query: 805 EIIFP 809
            ++ P
Sbjct: 505 IVMIP 509


>gi|237653646|ref|YP_002889960.1| PAS sensor protein [Thauera sp. MZ1T]
 gi|237624893|gb|ACR01583.1| PAS sensor protein [Thauera sp. MZ1T]
          Length = 2109

 Score =  311 bits (796), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 121/651 (18%), Positives = 227/651 (34%), Gaps = 36/651 (5%)

Query: 193  PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD 252
                G  LD   +     +    + E+         +   + R+      +  +   ++ 
Sbjct: 1222 AEQGGFWLDAALACEFAARFHLDAGERAVARSCFDDACRRYQRLGAHSPVVHLHEQLEEY 1281

Query: 253  VLKTEKYPLLTSEESSLPEQEDFHTINLN---QYTKKQYFGTLQNNSKESFEYLSHRNHP 309
             L      L  + E      E  H+ +L+   + ++      +     E    L+  +  
Sbjct: 1282 GLWPRPPGLAGAGEMQGGLDETNHSFDLSSVIEASQAISDEIVLERLIERLLQLALTSAG 1341

Query: 310  SLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
            +         +                  G+    + +    T    V  +         
Sbjct: 1342 AQRGALALSRDRHLRV-----EAIAGLEEGSTLMCSLALEAATSRVPVSVLNYVARTGEA 1396

Query: 370  LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
            L                 R   +    S     I ++ E +  +        + F +   
Sbjct: 1397 LVLGDAPRQQMFAHDPYIR---SQAPRSLLCMPILYHGELTALLYLEHRLGRDIFDQQRL 1453

Query: 430  QNGIEPEDVDTRINKRK-----MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
            +             +       ++       S+ E   +GI  ++ +G  LS N A+ +L
Sbjct: 1454 KTLRILAAQAAISIENAKLYLGLQQSEQAYRSLYENAIEGIFRVDPDGRFLSANPALVRL 1513

Query: 485  FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
             G+          T    Q      +            + +   T    ++   + + I 
Sbjct: 1514 LGHDSAAEFLTGITDVSTQCFARAEDQRRFLGRLNMEEKVVGFETRWRRRDGSEVEVSIS 1573

Query: 545  IKKLPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
             +++            ++ DI E K ++     A++ AE  S  KSDFLA +SHEIRTP+
Sbjct: 1574 ARRVLDDGGRLRCYEGSLTDIGERKAKERA-ELARERAEAASRAKSDFLAAMSHEIRTPM 1632

Query: 601  TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
              I+G ++++      P       E+ + I  SG+ +L I++D+LD SKIE+G++ L   
Sbjct: 1633 NGILGMAQLLARSGLAPG----QAEWVDAIRASGSTLLGILDDVLDFSKIEAGQLTLESA 1688

Query: 661  PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFT 719
            P S  EA++    ++   + +K +++R      +P  +L D R++ QI LN+  NA+ FT
Sbjct: 1689 PFSPAEALAALRPMLATMSAQKGLVLRLEIDPALPGGVLGDRRALHQIVLNLAGNAVKFT 1748

Query: 720  PSGGQ-IIISTTHTSNEEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
              G   +             L   V D+G+G+      +    F Q   S   R  GTGL
Sbjct: 1749 ARGFVAVRARCLPARAGRCRLGLEVEDSGIGIAEEAQRRIFTEFTQADGSITRRFGGTGL 1808

Query: 777  GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF--PLYDTS-----HPHDCI 820
            GL + + +VD   G   + S P +G+        PL   +      PH  I
Sbjct: 1809 GLAICRRLVDLQGGSLGVRSRPGEGSTFSCELEYPLATPAPRASPRPHAAI 1859



 Score = 62.7 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 53/578 (9%), Positives = 115/578 (19%), Gaps = 75/578 (12%)

Query: 86   TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL--LKRQNTW 143
             + +D  G     +  L + +G+ +       + DVS        +    L  L  +   
Sbjct: 1494 IFRVDPDGRFLSANPALVRLLGHDSAAEFLTGITDVSTQCFARAEDQRRFLGRLNMEEKV 1553

Query: 144  YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             G  T W     +  V + ++A  +         + G   +                ++ 
Sbjct: 1554 VGFETRWRRRDGSE-VEVSISARRVLDDGGRLRCYEG--SLTDIGERKAKERAELARER- 1609

Query: 204  FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
                   K    +    +                     L          L   +   + 
Sbjct: 1610 AEAASRAKSDFLAAMSHEIRTPMN-------------GILGMAQLLARSGLAPGQAEWVD 1656

Query: 264  SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
            +  +S           L+    +    TL++      E L+       +    +G  L  
Sbjct: 1657 AIRASGSTLLGILDDVLDFSKIEAGQLTLESAPFSPAEALAALRPMLATMSAQKGLVLRL 1716

Query: 324  ETVDKCPIPFFVYSHGNLFY-------ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
            E     P                    A               +    G   L    + S
Sbjct: 1717 EIDPALPGGVLGDRRALHQIVLNLAGNAVKFTARGFVAVRARCLPARAGRCRLGLEVEDS 1776

Query: 377  DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
                 +               A     +      L +         Q      ++     
Sbjct: 1777 GIGIAEEAQRRIFTEFT---QADGSITRRFGGTGLGLAICRRLVDLQGGSLGVRSRPGEG 1833

Query: 437  DV-------------DTRINKRKMEIEVMQLCSI------LEATSDGIAIINREGIILST 477
                                +    I   +L  +      L     G  + +    +   
Sbjct: 1834 STFSCELEYPLATPAPRASPRPHAAIGEARLHVLVVEDVELNRCIAGTLLEDEGHTVRFA 1893

Query: 478  NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
            +     L  +  ED       + L       +   +         +              
Sbjct: 1894 SDGYGALELHEREDFDTILLDIHLPDLDGMEVARRIRRHPDARKARARIVALTA-----S 1948

Query: 538  LLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
            + +  +   +            D  E  +   +       A   +   +  LA       
Sbjct: 1949 ITTDEVARYRAAGVDAVVGKPFDFDELIRSLREPPVPPAAAPGSALMDTRLLAT------ 2002

Query: 598  TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
                             F  LG+ R     + +   G 
Sbjct: 2003 ----------------HFARLGDERVRPMMDMLATQGR 2024


>gi|255692100|ref|ZP_05415775.1| two-component system sensor histidine kinase [Bacteroides
           finegoldii DSM 17565]
 gi|260622252|gb|EEX45123.1| two-component system sensor histidine kinase [Bacteroides
           finegoldii DSM 17565]
          Length = 624

 Score =  311 bits (796), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 117/527 (22%), Positives = 202/527 (38%), Gaps = 38/527 (7%)

Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSV 357
             E     N  S        E +        P+   +Y+   +    N     +   +  
Sbjct: 112 IAELQEAPNMTSAYQALQHSERILHNIYKHLPVGIELYNEDGILIDLNDKEQEMFHLEKK 171

Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW-----NRENSLA 412
           +D+        +   P   +    +   L R++            I        RE ++ 
Sbjct: 172 EDLLGLD----IFKNPMFPEEMKER---LRRNEDADFTFRYDFSKIGSYYKNSKREGTID 224

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN--- 469
           +        +     +    I  +  +T I   K++        + +    G A +N   
Sbjct: 225 LVTKVTTLYDDEGNPINYLLINADKTETTIAYNKIQEFEEFFELVGDYAKVGYAHLNLLT 284

Query: 470 REGIIL-STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528
            EG    S  R + +  G P+ DI+       L  +  + M  +  ++    L   L K 
Sbjct: 285 GEGYAQKSWYRNIGEADGTPLSDIIG--IYRHLHPDDRNCMVQFFEDVR-NGLTAKLSKE 341

Query: 529 TLGSTKEEKLLSLRIII-----KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
                   +     + +                  +DI+E K+ +  L  A+  AE    
Sbjct: 342 VRVLRSNGEYTWTHVNLLVRKYIPQDKIIELISINYDITELKKTEEMLVKARDKAEASDR 401

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
            KS FLA +SHEIRTPL AI+GFS ++               Y + I  +  L+L+++ND
Sbjct: 402 LKSAFLANMSHEIRTPLNAIVGFSALLA----ATEDMAEKELYNSLISHNNELLLELIND 457

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703
           +LD+SK+ESG + LH    +L E + E+++          + +RT + +    +  D   
Sbjct: 458 VLDLSKLESGYLELHPSWFNLAELLDESVAEYTRQLAA-GVELRTHYLDQGFLVELDRLR 516

Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHT-SNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
           +KQI  N LSNA+  T SG    +   +   +  V + VRDTG G+    LEK  + F +
Sbjct: 517 IKQILNNFLSNALKNTTSG---YVEVFYEIDSSYVRIGVRDTGRGIPQNMLEKIFERFEK 573

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           + +      +G GLGLP+ K++VD   G+ +  S    GT   +  P
Sbjct: 574 VDSFT----QGAGLGLPICKSIVDKMNGRIWADSQLGIGTTFMVELP 616


>gi|322418783|ref|YP_004198006.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           M18]
 gi|320125170|gb|ADW12730.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           M18]
          Length = 981

 Score =  311 bits (796), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 103/727 (14%), Positives = 238/727 (32%), Gaps = 63/727 (8%)

Query: 116 MRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPI--DLAALPIYSRNR 173
                 ++    D   ++   L+R   W  +T    ++    +  +  +L+   I     
Sbjct: 274 ETFARQAETYGFDKEQYLA-ALERLPRWSRETIHTVMDFYTCFASMIAELSCRNIR---- 328

Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP-- 231
                    +              K L+ + S + +              I         
Sbjct: 329 ---------LARALGERKRAEEALKVLEAEKSIILDSTIDLVLYHDRDMRILWVNREACD 379

Query: 232 -PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG 290
              ++ +  V        H+         P++ +  +  P++ +  + +           
Sbjct: 380 SAGMQPEELVGRHCWEIWHQRTEACIGC-PVIAAFATGEPQEAEIRSPDG--RQWHIRGF 436

Query: 291 TLQNNSKESFEY----LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV--YSHGNLFYA 344
            ++++  +        L       +     E E          P    +   + G     
Sbjct: 437 PVRDDEGKVMGVTEFCLDITERKRMEQALRESEVNFATVFRATPSVLVISTLADGRYIEV 496

Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
           N +F  +  Y+  + I    G ++L            + + L +         AR  +  
Sbjct: 497 NETFERVIGYRREEAI----GRTSLELEIWEDPEARTRFIRLLQERGKVRDLEARFRSKT 552

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
              +  + +      +            +  +    +  +  +     +  ++ E  +D 
Sbjct: 553 --GDIFVGLLSAEVIEMKGE---KRLLILVNDITARKRAEEALWESEGRYRTLFEGANDA 607

Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKP---FTVFLEQNTPSVMNHYLTEILSLDL 521
           I  I R+G+I++ N    +LF    E+ + K     +  L+ +          +I  +  
Sbjct: 608 IFTI-RDGLIVNCNNKALELFRSTPEEFIGKSPEQLSPLLQPDGADSAAKAREKIGQVAA 666

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAE 579
                        +  L    + + +L +         + DI+E ++ + +     ++ E
Sbjct: 667 GPPQFFPWRHRRGDGTLFDAEVSLNRLEYQGKTELLAILRDITERRRAEEQNRRFNEMLE 726

Query: 580 KE-----------SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
           +            +     F   +SH++R+PL AI GF+  I  +      N    +   
Sbjct: 727 RRVAERTAELEEINRELESFCYTISHDLRSPLRAIDGFT-HILREDHEADFNAEGRQLCQ 785

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I  S   + ++++DLL+ S+I  G+  L  +P+ + + V      V      +RI  R 
Sbjct: 786 RISGSAVRMGELIDDLLNFSRI--GRAALQADPIEMTDLVRAVFDEVVPQEARRRIEFRL 843

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS-NEEVILRVRDTGVG 747
                +P  + D  +++Q+  N++ NA+ ++    + +I         E + +VRD GVG
Sbjct: 844 ---APLPPAIGDRATLRQVWANLIDNAVKYSSDRPRQVIEIGGEQTETETVFQVRDNGVG 900

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
                 +K    F ++  +      GTG+GL +   +V  + G+ +      +G  +   
Sbjct: 901 FDMAYADKLFGVFQRLHGA--HEFRGTGVGLAIVGRIVQRHGGRVWAEGAVDRGATLYFS 958

Query: 808 FPLYDTS 814
            PL   S
Sbjct: 959 LPLPAPS 965



 Score =  108 bits (271), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 57/510 (11%), Positives = 125/510 (24%), Gaps = 53/510 (10%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN-HIGDLLKRQNTWYGKTT 148
           D    +  ++ E   + G    +++G    ++            +            +  
Sbjct: 365 DRDMRILWVNREACDSAGMQPEELVGRHCWEIWHQRTEACIGCPVIAAFATGEPQEAEIR 424

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +G   ++       P+     +  G   F                +  +  F+ + 
Sbjct: 425 S--PDGRQWHIR----GFPVRDDEGKVMGVTEF--CLDITERKRMEQALRESEVNFATVF 476

Query: 209 EIKKGHSSVEK-EKYDIFSQQSPPPHL---RMKNKVSSLTEYYAHKDDVLKTEK-YPLLT 263
                   +                 +   R +  +   +      +D     +   LL 
Sbjct: 477 RATPSVLVISTLADGRYIEVNETFERVIGYRREEAIGRTSLELEIWEDPEARTRFIRLLQ 536

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQ--NNSKESFEYLSHRNHPSLSAYFDEGENL 321
                   +  F +   + +        ++     +                   E E  
Sbjct: 537 ERGKVRDLEARFRSKTGDIFVGLLSAEVIEMKGEKRLLILVNDITARKRAEEALWESEGR 596

Query: 322 TPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
                +      F    G +   N   L L +    + I  +    + L  P  +D+ A 
Sbjct: 597 YRTLFEGANDAIFTIRDGLIVNCNNKALELFRSTPEEFIGKSPEQLSPLLQPDGADSAAK 656

Query: 382 K---------------PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
                           P    R D T   A   L+ +++  +  L        +  +  E
Sbjct: 657 AREKIGQVAAGPPQFFPWRHRRGDGTLFDAEVSLNRLEYQGKTELLAILRDITERRRAEE 716

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEV-------------MQLCSILEATSDGIAIINREGI 473
              +     E ++ R+ +R  E+E                L S L A  DG   I RE  
Sbjct: 717 QNRRF---NEMLERRVAERTAELEEINRELESFCYTISHDLRSPLRAI-DGFTHILREDH 772

Query: 474 ILSTNRAVSKLFGYPVEDI--LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
               N    +L          + +     L  +           I   DL + +    + 
Sbjct: 773 EADFNAEGRQLCQRISGSAVRMGELIDDLLNFSRIGRAALQADPIEMTDLVRAVFDEVVP 832

Query: 532 STKEEKLLSLRIIIKKLPFSSCYSLTMHDI 561
                +   +   +  LP +     T+  +
Sbjct: 833 QEARRR---IEFRLAPLPPAIGDRATLRQV 859



 Score =  108 bits (269), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 35/337 (10%), Positives = 93/337 (27%), Gaps = 15/337 (4%)

Query: 237 KNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS 296
           +++V     +    +     ++  L   E      +E  HT+             L   +
Sbjct: 267 EDEVPDRETFARQAETYGFDKEQYLAALERLPRWSRETIHTVMDFYTCFASMIAELSCRN 326

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYK 355
                 L  R     +    E E      +D        +     + + N         +
Sbjct: 327 IRLARALGERKRAEEALKVLEAEKSI--ILDSTIDLVLYHDRDMRILWVNREACDSAGMQ 384

Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
             + +             + ++     PV+   +      A  R      +         
Sbjct: 385 PEELVGRHCWE----IWHQRTEACIGCPVIAAFATGEPQEAEIR----SPDGRQWH---I 433

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS-DGIAIINREGII 474
             F   +   + M       +  + +  ++ +    +   ++  AT    +     +G  
Sbjct: 434 RGFPVRDDEGKVMGVTEFCLDITERKRMEQALRESEVNFATVFRATPSVLVISTLADGRY 493

Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
           +  N    ++ GY  E+ + +          P     ++  +      + LE      T 
Sbjct: 494 IEVNETFERVIGYRREEAIGRTSLELEIWEDPEARTRFIRLLQERGKVRDLEARFRSKTG 553

Query: 535 EEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571
           +  +  L   + ++       + ++DI+  K+ +  L
Sbjct: 554 DIFVGLLSAEVIEMKGEKRLLILVNDITARKRAEEAL 590



 Score = 83.9 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 40/400 (10%), Positives = 97/400 (24%), Gaps = 35/400 (8%)

Query: 69  DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID 128
           +SE  F             +  A G   E++E   + IG    + IG    ++      +
Sbjct: 467 ESEVNFATVFRATPSVLVISTLADGRYIEVNETFERVIGYRREEAIGRTSLELEIWEDPE 526

Query: 129 PNNHIGDLLKRQNTWYGKTTLWP-IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187
                  LL+ +         +    G      +    + +    R         +V+  
Sbjct: 527 ARTRFIRLLQERGKVRDLEARFRSKTGDIFVGLLSAEVIEMKGEKRLLI------LVNDI 580

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEK---------YDIFSQQSPPPHLRMKN 238
                        + ++  L E         ++           ++F         +   
Sbjct: 581 TARKRAEEALWESEGRYRTLFEGANDAIFTIRDGLIVNCNNKALELFRSTPEEFIGKSPE 640

Query: 239 KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE 298
           ++S L +           EK   + +          +     +           +   + 
Sbjct: 641 QLSPLLQPDGADSAAKAREKIGQVAAGPPQF---FPWRHRRGDGTLFDAEVSLNRLEYQG 697

Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANP---SFLLLTKYK 355
             E L+     +     +E      E +++            L   N    SF     + 
Sbjct: 698 KTELLAILRDITERRRAEEQNRRFNEMLERR----VAERTAELEEINRELESFCYTISHD 753

Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
               +    G + +L     +D NA         +   +        ++        + F
Sbjct: 754 LRSPLRAIDGFTHILREDHEADFNA---------EGRQLCQRISGSAVRMGELIDDLLNF 804

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
               +A    + +    +     D  + +        +L 
Sbjct: 805 SRIGRAALQADPIEMTDLVRAVFDEVVPQEARRRIEFRLA 844



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/136 (15%), Positives = 49/136 (36%), Gaps = 1/136 (0%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
           R+      +   + +   D I++    +GI+L  N A  +L GY  E+++ +        
Sbjct: 8   RETVANSEKYHHLFQFFPDAISLTRASDGILLDANGAFEQLTGYRREELIGQRTAHLGCW 67

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
             P         + +    + L+            + L + + ++    CY   + DI++
Sbjct: 68  LDPVSWEKVSKALEATGEVRDLDTRLQCKDGRLASVLLTLRLLEMEGEPCYLAVVRDITD 127

Query: 564 WKQEKNKLSHAKKIAE 579
            K+   K    ++   
Sbjct: 128 RKRADEKAREREEELR 143



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/142 (14%), Positives = 36/142 (25%), Gaps = 11/142 (7%)

Query: 322 TPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
                   P    +     G L  AN +F  LT Y+  + I              L   +
Sbjct: 17  YHHLFQFFPDAISLTRASDGILLDANGAFEQLTGYRREELIGQRTA----HLGCWLDPVS 72

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
             K      +         RL     +   +  +  +   +    P       +  +  D
Sbjct: 73  WEKVSKALEATGEVRDLDTRLQ--CKDGRLASVLLTLRLLEMEGEPC---YLAVVRDITD 127

Query: 440 TRINKRKMEIEVMQLCSILEAT 461
            +    K      +L S L+  
Sbjct: 128 RKRADEKAREREEELRSQLDTL 149



 Score = 47.3 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 14/124 (11%), Positives = 31/124 (25%), Gaps = 7/124 (5%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW- 150
            G L + +    +  G    ++IG R   +   L       +   L+         T   
Sbjct: 35  DGILLDANGAFEQLTGYRREELIGQRTAHLGCWLDPVSWEKVSKALEATGEVRDLDTRLQ 94

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
             +G    V + L  L +              +V             +  +++     + 
Sbjct: 95  CKDGRLASVLLTLRLLEMEGEP------CYLAVVRDITDRKRADEKAREREEELRSQLDT 148

Query: 211 KKGH 214
               
Sbjct: 149 LLSP 152


>gi|254245733|ref|ZP_04939054.1| Signal transduction histidine kinase [Burkholderia cenocepacia PC184]
 gi|124870509|gb|EAY62225.1| Signal transduction histidine kinase [Burkholderia cenocepacia PC184]
          Length = 1220

 Score =  311 bits (796), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 116/678 (17%), Positives = 228/678 (33%), Gaps = 23/678 (3%)

Query: 144  YGKTTLWPIEGTNLYVPID-LAALP----IYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
                     E     + +   A  P    +  R    SG  GF       +     A  +
Sbjct: 411  RNLLIYLRKEAQQHVLEVLHYACRPNGFMLLGRAEAVSGADGFEHAGAPHLYRKVPAAKR 470

Query: 199  RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
               +    +  ++   S           Q  P      +  +   +      DD      
Sbjct: 471  --QQGAFPIDALRPWASQGTAPSVRRAQQPDPILEAANRAALERYSPPGFVVDDKGDVVH 528

Query: 259  YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE- 317
            +    S   +    E    + L +  + +   T++    E+           ++      
Sbjct: 529  FRGDVSGFVAPASGEAS--LALPRLLQPELNVTVRTALIEAKRTNQPVRRERVALGDQHF 586

Query: 318  GENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
               + P T D     F V        A       T   +         L   +       
Sbjct: 587  ALEVLPLTADDLVPHFLVTMERLPDLAPGRHGASTGAGATGA--RVQELERTVTTLSDEL 644

Query: 378  NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
                  +    ++        R    +    N    +        +         +   +
Sbjct: 645  EATQAQLKTVVAEFESANEELRTANEEMLSTNEELQSANEELMLAKQELESTNQELASLN 704

Query: 438  VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
             +     ++++     L +++E     + +++R+  +   +     LFG   + +  +P 
Sbjct: 705  DELNSRNQQLDRANDDLSNLVEGIPLPVVVLDRQLRLRHFSPQAQTLFGLSDDSV-GQPM 763

Query: 498  TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYS 555
                   + +     L  ++   ++   +        E +   + +   +          
Sbjct: 764  AQQNSLFSAAD----LERVVQSAVQGLADVEHEYQDSEGRWWLVNVRAYRTADDRIDGAV 819

Query: 556  LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK--NQ 613
            L   DI   K+       A+  AE+ ++ K +FLA VSHE+R+PL  I G++ V+    +
Sbjct: 820  LAFQDIDALKRALGTAQSARDEAERANTAKDNFLALVSHELRSPLNVISGWAAVLMTARE 879

Query: 614  RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
            R               I R   L  ++++DLLD+S+I SG+ +L  +PV    AV   + 
Sbjct: 880  RGVSTDEEMSQRAVTTILRHCQLQAELIDDLLDVSRISSGRFSLDTKPVDFAAAVRTVVE 939

Query: 674  LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
              +  A +K+I + ++       +  D R ++Q+A N+L NA+ FTP GG++ ++ T   
Sbjct: 940  SNRPAAEKKQITLVSAGLQGRAIVSGDARRLQQVASNLLGNALKFTPDGGRVEVALT-QL 998

Query: 734  NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
               V L V D G+G+    L +    F Q   ++     G GLGL + K +V A+ G   
Sbjct: 999  GTLVELSVTDNGIGVKAELLPRLFDRFMQSDITRTRNYGGLGLGLSIVKHLVSAHGGTVT 1058

Query: 794  IFST-PAKGTLIEIIFPL 810
              S    +GT + +  PL
Sbjct: 1059 ASSEGEGRGTRLTVRLPL 1076


>gi|119773209|ref|YP_925949.1| signal transduction histidine kinase-like protein protein
           [Shewanella amazonensis SB2B]
 gi|119765709|gb|ABL98279.1| Hpt sensor hybrid histidine kinase [Shewanella amazonensis SB2B]
          Length = 1021

 Score =  311 bits (796), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 90/479 (18%), Positives = 179/479 (37%), Gaps = 37/479 (7%)

Query: 351 LTKYKSVDDIEIAG--GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
           L        +E A   G    +    L     +    L +        +A    I+ + +
Sbjct: 158 LYVAYDPAALEQAAQKGFMEFILIQSLGFMLLLFINTLVQQKVVLGPINAIRRQIEADPQ 217

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468
           + LA+              +             +  +++E     + +++      +A +
Sbjct: 218 SELAL-------KADDELGLLVESYNASIRQRIMQAKELEDSRRYIDTVINVIPVQLAYV 270

Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528
           +        NR      G    ++L +  T  L      ++  Y    L    +Q  +  
Sbjct: 271 DASRCYRFINRRYLVWLGKSEAEVLGRSVTDVLPPPVEELIVPYQLRAL-QGNQQVFDAE 329

Query: 529 TLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN--------------KLSHA 574
                 +   +     +        +   + D++  K  +                L  A
Sbjct: 330 FDDKYFQATYVP---DVTNDGEVVGFFACVEDLTPIKANERKIESYALELEHKNADLVEA 386

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
           ++ AE  S  K+DFLA +SHEIRTP+  ++G   +++          +   Y +    S 
Sbjct: 387 REKAEAASRIKADFLACMSHEIRTPMNGVLGILSLLEKTELSI----QQKHYLDVASTSA 442

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN-N 693
             +L ++ND+LD SKIESGK  +   P  L + + + I    + A  K + +    +  +
Sbjct: 443 ESLLTLLNDILDFSKIESGKFEIDEVPFDLIQLLDDFIQPFAIRAEAKGLKLLLDISGIH 502

Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDTGVGMT 749
           +  +  D   ++Q+ +N++SNAI FT  G  I +    + +      +++ + DTG+G++
Sbjct: 503 LRWVRGDPGRIRQVLVNLVSNAIKFTEVG-WIAVRVQASEDTANGVSLMVSIEDTGIGIS 561

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
             + E    PF Q  ++      GTGLGL +AK + +   G   + S    G+  +   
Sbjct: 562 KDKQEVLFSPFTQADSTTTRHFGGTGLGLSIAKRLCELMDGDIRVISAEDAGSTFKFHL 620


>gi|115359898|ref|YP_777036.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria AMMD]
 gi|115285186|gb|ABI90702.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria AMMD]
          Length = 1002

 Score =  310 bits (795), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 110/588 (18%), Positives = 198/588 (33%), Gaps = 42/588 (7%)

Query: 236 MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN 295
           +  +V +L   +  K  + + +  P   S  S+   +E       +  T +      Q  
Sbjct: 190 LVKQVLALPAGFDIKALIRQLQPPPDFVSMASASDSREVLLDRRDDPLTGRSTLRFAQAV 249

Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYK 355
                + ++           D+    +    D                 +P+  +LT  +
Sbjct: 250 RDPQGKPVAWF-VAVSRPEIDDFLRSSSAGKDYA-------------LVSPAGQVLTGRE 295

Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIK--PVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
               +             + +  + +    V+  R        +A         + +  +
Sbjct: 296 IDPALTARALDYAHKAGRERAAAHRVGMNIVIGNRMPGFREVLTATFSWRSLFDDMAGRL 355

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME--IEVMQLCSILEATSDGIAIIN-R 470
                              +         N+R +          +++     G+ +++  
Sbjct: 356 GVAIGLALLAIGTVWFAIVMFDRRALRPANRRAIRLIESEALNRTLIRTAPAGLMLLSLA 415

Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530
            G  +  N A            L K                    I      + +     
Sbjct: 416 NGDTMVRNEAAQAYGDTDAAASLGKRIWQAYH-----------RSIAGGRAPRVVTHELS 464

Query: 531 GSTKEEKLLSLRIIIKK--LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
                     L   I +           T+ DI+  KQ ++KL  A++ A+  +  KS F
Sbjct: 465 VDLAGGGTTYLAAHIVRTRYRGVDVLLCTLTDITARKQMEDKLREAREAADDANKAKSTF 524

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
           LA +SHEIRTPL AI+G  E+++     PL           +  S + +L ++ND+LD+S
Sbjct: 525 LATMSHEIRTPLNAIVGNLELMER---APLPAEERRR-LQTVMSSSDALLRVINDVLDLS 580

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQI 707
           K+ES +M L   P  L   V +  ++    A  + + +       +    + D   ++QI
Sbjct: 581 KVESNQMVLEAVPFDLRAVVRDVAAIFHPLAAARHLALECRIDPQLADGYVGDPTRLRQI 640

Query: 708 ALNILSNAIHFTPSGGQIIISTTHT----SNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
             N++SNAI FT  G  + I    T        V + VRDTG+G+    L      + Q 
Sbjct: 641 VSNLVSNAIKFTERGS-VTIEARPTGTVGQARGVEVVVRDTGIGIAPESLPTLFDVYVQT 699

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
             S   R  GTGLGLPL + +     G   + S P +G    +  PL 
Sbjct: 700 DASIYRRFGGTGLGLPLCRRLARLMHGDLAVESRPGQGATFIVSLPLS 747


>gi|162452466|ref|YP_001614833.1| hypothetical protein sce4190 [Sorangium cellulosum 'So ce 56']
 gi|161163048|emb|CAN94353.1| unnamed protein product [Sorangium cellulosum 'So ce 56']
          Length = 1360

 Score =  310 bits (795), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 93/630 (14%), Positives = 202/630 (32%), Gaps = 34/630 (5%)

Query: 198  KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ-SPPPHLRMKNKVSSLTEYYAHKDDVLKT 256
            +R++ +   L  +     +++         +         + ++ +L     H    L+ 
Sbjct: 610  RRVESRRGTLPHVLITFDAIDGAPRRAAMPEMEIDLDDVSREQLGALEAELGHTKQTLQA 669

Query: 257  EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
                L  S E      E+    N    +  +   ++             +         D
Sbjct: 670  MTEQLEASNEELQAANEELLASNEELQSTNEELQSVNEELYSVNAEYQRKIADLTELGND 729

Query: 317  EGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
                L+   +       F+     +    P           D        +  +D P+L+
Sbjct: 730  MENLLSSTDIGT----IFLDRELKIRKFTPQIAESFNLLLQDVGRPIETFTYAVDHPELT 785

Query: 377  DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
             +         R +R       R   ++                               +
Sbjct: 786  ADLKRVLATGERVERELRDRHGRSFFLR-------------ILPYRAKGTIAGVVLTLID 832

Query: 437  DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP-VEDILRK 495
                +  +  +  E   L S+L +  D I   +  G  + TN A+++  G     +   K
Sbjct: 833  VSGLKAAEDALFHERYLLNSLLRSVPDAIYFKDARGRFIRTNNAMAERLGLSDPGEAAGK 892

Query: 496  PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--- 552
                         ++     +L     Q  +        +  +    +    L  ++   
Sbjct: 893  TGFELPGYEAALAVHQEDEVVLRTGEAQHYKLERRVRH-DGVVEWDLVTRLPLIDAARHI 951

Query: 553  -CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
                     ++  K+ + ++             + +FLA +SHE+R PL AI+  + ++K
Sbjct: 952  VGIIGIFRSVTAQKRSEEQIKD-------AVRRRDEFLAMLSHELRNPLGAIVHATALLK 1004

Query: 612  NQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
                   G     E     ++R    +  +++DLL+ S++   K+ L    + L   V +
Sbjct: 1005 EDCSASDGASGIDEKVVQILERQSAQMARLLDDLLEASRVTQNKIELRKRVLDLGSVVKD 1064

Query: 671  AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
            A   V+   + + +            +  D   ++Q+ +N+L+NA  +T  GG + +   
Sbjct: 1065 AADAVKNLMDTRGVDFSVVVDPEPIWVEGDPARLQQVHVNLLNNAAKYTSRGGHVTLEAK 1124

Query: 731  HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
                   ++RV+D GVG+    L+   + F Q   +      G G+GL L + +V+ + G
Sbjct: 1125 RLD-GHAVVRVKDDGVGIPKEMLDTVFELFVQSSRTLDRSAGGLGVGLTLVRGLVEKHGG 1183

Query: 791  KFYIFST-PAKGTLIEIIFPLYDTSHPHDC 819
                 S    KG   E+  P+ + S   + 
Sbjct: 1184 TVSARSEGEGKGCEFEVRLPISEPSSEQEA 1213



 Score = 48.5 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/180 (9%), Positives = 42/180 (23%), Gaps = 4/180 (2%)

Query: 90   DAHGYLKEISEELPKTIGNY-AFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            DA G     +  + + +G     +  G    ++         +   +++ R         
Sbjct: 865  DARGRFIRTNNAMAERLGLSDPGEAAGKTGFELPGYEAALAVHQEDEVVLRTGEAQHYKL 924

Query: 149  LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +    +     +  LP+    R   G    GI              K   ++     
Sbjct: 925  ERRVRHDGVVEWDLVTRLPLIDAARHIVGI--IGIFRSVTAQKRSEEQIKDAVRRRDEFL 982

Query: 209  EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
             +             + +           +  S + E      +    +   LL     +
Sbjct: 983  AMLSHELR-NPLGAIVHATALLKEDCSASDGASGIDEKVVQILERQSAQMARLLDDLLEA 1041


>gi|89076676|ref|ZP_01162968.1| hypothetical protein SKA34_13950 [Photobacterium sp. SKA34]
 gi|89047657|gb|EAR53262.1| hypothetical protein SKA34_13950 [Photobacterium sp. SKA34]
          Length = 701

 Score =  310 bits (795), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 82/373 (21%), Positives = 155/373 (41%), Gaps = 15/373 (4%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
               +++     +     +   D    I+ +      +           ++ +       
Sbjct: 190 AARTQQLTFSQQRFKDFAKTAGDWFWEIDVDYNFTYISEPQVANTQISCDNFI------E 243

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTM 558
              N P   N   +++    + + LE         ++  S         +     +  T 
Sbjct: 244 FFNNYPLFQNKLTSKLSQQVVFEDLEWNLSSVDNTDQWYSFSGTPYFDKYGKLQGFRGTA 303

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            DI+  K+    L  A+K AE  +  KS F+A +SHEIRTPL A++G  E +        
Sbjct: 304 KDITSRKRRLFDLQEAQKQAETANKAKSQFIAMMSHEIRTPLNAVLGLMESLSLSGL--- 360

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
            N +   + + +D+S +L+L I+ND+LD+S+IESG   L    +++ E++      +   
Sbjct: 361 -NNKQNLWLSQMDQSAHLLLTIINDILDLSRIESGSFRLFNSDINVVESIRLVADQLAPQ 419

Query: 679 ANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737
           A +  +  +    + IP +I  D   + Q+  N++ NA+ FT  G  + +      +  +
Sbjct: 420 ATKNNVQFQCEIDDAIPKQIYGDKNRIAQVLFNLIGNAVKFTSIGS-VRVVARKVDDN-I 477

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
            + V DTG+G+          PF Q   S   R  GTGLGL +++ +++   G   + S 
Sbjct: 478 EIAVIDTGIGIAKDAQANIFNPFHQADGSITRRYGGTGLGLAISQHLIEKMDGTISLESE 537

Query: 798 PAKGTLIEIIFPL 810
              G+  +I  P+
Sbjct: 538 LGTGSCFKISIPI 550


>gi|158334365|ref|YP_001515537.1| serine/threonine protein kinase and signal transduction histidine
            kinase (STHK) with GAF and PAS/PAC sensor [Acaryochloris
            marina MBIC11017]
 gi|158304606|gb|ABW26223.1| serine/threonine protein kinase and signal transduction histidine
            kinase (STHK) with GAF and PAS/PAC sensor [Acaryochloris
            marina MBIC11017]
          Length = 3073

 Score =  310 bits (795), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 126/800 (15%), Positives = 254/800 (31%), Gaps = 124/800 (15%)

Query: 123  DILHIDP---NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFR 179
                ++       +   ++   +W G+  L   EG    +P+    +   + +     F 
Sbjct: 2056 HPDWVNQIIVEEALPAAIEYG-SWTGELALL--EGNGDEIPVSQVIIAHKAADGTVENFS 2112

Query: 180  GFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHS------SVEKEKYDIFSQQSPPPH 233
               I+   R              +F  + E   G            ++    S Q    +
Sbjct: 2113 T--IMRDMRDRRSAEQALAESQAQFRRMTENVPGMIFRYVSHPDGSKEMTYVSSQVREIY 2170

Query: 234  LRMKNKVS---SLTEYYAHKDDVL-KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYF 289
                  V    +      H +D+        +          +             +   
Sbjct: 2171 ELEPETVLQDFACLWERTHPEDIAWLEATAKVCAKTLQPFKTENRLILPQKGLRWVQASA 2230

Query: 290  GTLQNNSKES---FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY-SHGNLFYAN 345
               +  + +       L   +  +  A     E      ++  P P  ++   G +   +
Sbjct: 2231 LPKRLENGDIVWDGVVLDINDRKAAEANLRASEQRFRRAIEDAPFPIMIHAEDGEILQIS 2290

Query: 346  PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405
             ++  LT Y   D                      +K VM  +  RT          I+ 
Sbjct: 2291 STWTELTGYTLADIPTTTDWAQRAY---GADAPRILKEVMAQKYSRTTRWDEGE-FAIRK 2346

Query: 406  NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR-------------------- 445
               +     F                 +  +    R  +                     
Sbjct: 2347 QDGDYCFWQFSSAPLGTLPDGRRLVVSMAVDVTQRRQAENDLEQANQQLEEYSQTLKQKV 2406

Query: 446  -----KMEIEVMQ-----------------------LCSILEATSDGI-----------A 466
                  ++    Q                       L  I   T+  +            
Sbjct: 2407 EARTIALQAAKEQVEKANEYEQALNRITKEIRQSLNLHDIFATTTQAVRPILGCERVTVY 2466

Query: 467  IINRE--GIILS------------------TNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
              + E  G  +                    N +   L        +        + +  
Sbjct: 2467 QFDAEWGGKFVFESKHDSLEPLVFSSRQAEWNDSF--LVNEEGNPCVFNTTYQVDDISEK 2524

Query: 507  SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDI----- 561
             +   +L  +   ++R  L        K   LL+     +   +          +     
Sbjct: 2525 ELSPCHLEVLERFNIRAYLVVPIYVGKKLWGLLAAYNHSQPRAWQPGEVRLFEQVCSHLG 2584

Query: 562  SEWKQEK--NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
               KQ +  + ++ +K+ A+  +  KS FLA +SHE+RTPL  I+G+++++  +R   L 
Sbjct: 2585 VALKQAELLSAMAESKEKADAANEAKSLFLANMSHELRTPLNGILGYAQIL--RRSESLS 2642

Query: 620  NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
            N    E  + I + G+ +L+++ND+LDISKIE+ K+ L  +  +L   +   + + ++ A
Sbjct: 2643 NKEL-EGVDTIYQCGSHLLNLINDILDISKIEALKLELTPKAANLPYLLQTVVEMCKVKA 2701

Query: 680  NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ---IIISTTHTSNE 735
            ++K I      ++ +P+ +  D + ++Q+ LN+L NA+ FT  G     + +S       
Sbjct: 2702 DQKGIQFNYQPSSQLPQQVEVDDKRLQQVLLNLLGNAVKFTDHGSVTFIVDVSPLSEQQV 2761

Query: 736  EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
             +  RV DTGVG+   +L K  + F Q+   Q  + EGTGLGL +++ +V     + ++ 
Sbjct: 2762 SISFRVIDTGVGIAEQDLVKLFQSFKQV-GDQHKQAEGTGLGLAISQRIVRLMGSEIHVT 2820

Query: 796  STPAKGTLIEII--FPLYDT 813
            S P +G+        PL + 
Sbjct: 2821 SQPQQGSEFSFTINLPLAEQ 2840



 Score =  138 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 74/566 (13%), Positives = 171/566 (30%), Gaps = 58/566 (10%)

Query: 92   HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQNTWYGKTTLW 150
             G    ++E      G    +++G     +   + +   + +   ++ +   W G+ T  
Sbjct: 1538 DGKYIYLNEVHATLFGYERDELVGQSCEILYSPIELQRLHELAFPIVAKTGQWSGEATAT 1597

Query: 151  PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE- 209
              +G++  + + L  L     + +        I              ++ + ++  + E 
Sbjct: 1598 RKDGSSFPIDVSLFLL----EDGKL-----ICICRDISDRKAAEIQLRQQENQYRQVFES 1648

Query: 210  IKKGHSSVEKEKYDIFSQQSPP----PHLRMKNKVSSLTEYYAHKDD--VLKTEKYPLLT 263
            I  G + V+ E   +            +  ++  + +   +  H D   +L      +  
Sbjct: 1649 IVDGLNIVDLETGQLVKVNPAYSQMMGYSSLEECLRAPISHNIHPDSLYLLDDCLNAVRN 1708

Query: 264  SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD---EGEN 320
             +E S   Q       +            +             +   L        E   
Sbjct: 1709 GQEFSCQAQNLHQDGTVIDVEVSAIPYPYRGKIHALAIVRDISDRKRLEKEQAQLYESLA 1768

Query: 321  LTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
            L    ++       +   G+  Y N S L L  Y+  + +   G    +L  P+  +  +
Sbjct: 1769 LKSSAIEASDAGIAILKDGHYIYLNASHLSLLGYEEHELM---GASWEILYEPEEVERFS 1825

Query: 381  IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
             +       +             + +       ++ P E +    E+     I  +  + 
Sbjct: 1826 QQIFPQLAKEGRWF---GEATARRKDG------SYFPQEVSLSALEDHKLICICRDISER 1876

Query: 441  RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
            +     +E +  +   IL +TSD I   +  G IL  N A  +L      +   +   V 
Sbjct: 1877 KR----LEAKQQRQLDILASTSDFIGTADPNGNILYLNEAWQQLLQREQGEPAHR---VQ 1929

Query: 501  LEQNTPSVMNHYL--TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----Y 554
            + +  P+     +    +     +      T     +   + +  ++     S+     +
Sbjct: 1930 ISEQHPAWALEIIVHEALPVAAQKGMWCGETALLDGDGNEVPVSQVVIAHKSSNGGVKYF 1989

Query: 555  SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS--HEI----RTPLTAIIGFSE 608
            S  + DISE KQ + +    +           D++   S   EI    R  L A+    E
Sbjct: 1990 STIVRDISERKQLEQE----QARLTAVLEATPDYIGIASTTGEILWHNRQ-LRALRSDLE 2044

Query: 609  VIKNQRFGPLGNPRYIEYANYIDRSG 634
              ++ R     +P ++     I    
Sbjct: 2045 QHQDHRSIADCHPDWVN--QIIVEEA 2068



 Score =  122 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 75/598 (12%), Positives = 166/598 (27%), Gaps = 42/598 (7%)

Query: 60   ESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLC 119
              +S    L+++     D +  T  F    D +G +  ++E   + +     +       
Sbjct: 1871 RDISERKRLEAKQQRQLDILASTSDFIGTADPNGNILYLNEAWQQLLQREQGEPAHRVQI 1930

Query: 120  DVSDILHIDPNNHIGDLL---KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFS 176
                         + + L    ++  W G+T L   +G    VP+    +   S N    
Sbjct: 1931 SEQHPAWAL-EIIVHEALPVAAQKGMWCGETALL--DGDGNEVPVSQVVIAHKSSNGGVK 1987

Query: 177  GFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM 236
             F    IV              RL        +     S+  +  +     ++    L  
Sbjct: 1988 YFST--IVRDISERKQLEQEQARLTAVLEATPDYIGIASTTGEILWHNRQLRALRSDLEQ 2045

Query: 237  KNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYF----GTL 292
                 S+ + +    + +  E+      E  S   +      N ++    Q         
Sbjct: 2046 HQDHRSIADCHPDWVNQIIVEEALPAAIEYGSWTGELALLEGNGDEIPVSQVIIAHKAAD 2105

Query: 293  QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-----NLFYANPS 347
                  S      R+  S      E +       +  P   F Y         + Y +  
Sbjct: 2106 GTVENFSTIMRDMRDRRSAEQALAESQAQFRRMTENVPGMIFRYVSHPDGSKEMTYVSSQ 2165

Query: 348  FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
               + + +    ++    L          ++ A          +T          I   +
Sbjct: 2166 VREIYELEPETVLQDFACLW----ERTHPEDIAWLEATAKVCAKTLQPFKTENRLI-LPQ 2220

Query: 408  ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
            +    +      K  +  + +  +G+  +  D +  +  +     +    +E     I I
Sbjct: 2221 KGLRWVQASALPKRLENGDIV-WDGVVLDINDRKAAEANLRASEQRFRRAIEDAPFPIMI 2279

Query: 468  INREGIILSTNRAVSKLFGYPVEDI-LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
               +G IL  +   ++L GY + DI     +           +   +         +  E
Sbjct: 2280 HAEDGEILQISSTWTELTGYTLADIPTTTDWAQRAYGADAPRILKEVMAQKYSRTTRWDE 2339

Query: 527  KITLGSTKEEKLLSL---RIIIKKLPFSSCYSLTM-HDISEWKQEKNKLSHAKKIAEKES 582
                   ++            +  LP      ++M  D+++ +Q +N L  A +  E+ S
Sbjct: 2340 GEFAIRKQDGDYCFWQFSSAPLGTLPDGRRLVVSMAVDVTQRRQAENDLEQANQQLEEYS 2399

Query: 583  SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
                  +     E RT           ++  +        Y +  N I +     L++
Sbjct: 2400 QTLKQKV-----EARTI---------ALQAAKEQVEKANEYEQALNRITKEIRQSLNL 2443



 Score =  110 bits (276), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 51/410 (12%), Positives = 130/410 (31%), Gaps = 32/410 (7%)

Query: 201  DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
              + + L   + G   +        +Q    P +   N    L +Y  H  +VL  +   
Sbjct: 1388 ADRLNLLLPEEDGSWQIRVNATPETTQLDATPLVAPANLPIQLIQYVKHTQEVLCIDGLE 1447

Query: 261  LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS---------- 310
                      ++    ++       +     L     ++   +   +  +          
Sbjct: 1448 AELPIVDPYLQEHQPRSVLCLPLLHQGNLSGLLYLENQATAGVFTCDRITILNFLCSQAA 1507

Query: 311  ---LSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
                +A   E   L    ++       +   G   Y N     L  Y+  + +  +    
Sbjct: 1508 ISLENAKLYESAKLKSSIIESAIDGMAILEDGKYIYLNEVHATLFGYERDELVGQSC--- 1564

Query: 368  TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
             +L +P            +          S      + +  +       P + +    E+
Sbjct: 1565 EILYSPIELQRLHELAFPIVAKTGQ---WSGEATATRKDGSSF------PIDVSLFLLED 1615

Query: 428  MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFG 486
                 I  +  D +  + ++  +  Q   + E+  DG+ I++ E G ++  N A S++ G
Sbjct: 1616 GKLICICRDISDRKAAEIQLRQQENQYRQVFESIVDGLNIVDLETGQLVKVNPAYSQMMG 1675

Query: 487  YPV-EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
            Y   E+ LR P +  +  ++  +++  L  + +        +      ++  ++ + +  
Sbjct: 1676 YSSLEECLRAPISHNIHPDSLYLLDDCLNAVRNGQEFSCQAQ---NLHQDGTVIDVEVSA 1732

Query: 546  KKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
               P+         + DIS+ K+ + + +   +    +SS      A ++
Sbjct: 1733 IPYPYRGKIHALAIVRDISDRKRLEKEQAQLYESLALKSSAIEASDAGIA 1782


>gi|332667143|ref|YP_004449931.1| multi-sensor hybrid histidine kinase [Haliscomenobacter hydrossis
           DSM 1100]
 gi|332335957|gb|AEE53058.1| multi-sensor hybrid histidine kinase [Haliscomenobacter hydrossis
           DSM 1100]
          Length = 871

 Score =  310 bits (795), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 81/248 (32%), Positives = 127/248 (51%), Gaps = 8/248 (3%)

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            +Q+   +   K+ AE     K  FLA +SHEIRTP+ AI G ++++  +      N   
Sbjct: 477 LQQKNEIIEAEKENAENSERAKHQFLANMSHEIRTPMNAIKGMTDILIRRN----PNEDQ 532

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            EY N I +S + +L I+ND+LDISKIE+GK+ L  EP S+ E V+   +++Q  A EK 
Sbjct: 533 KEYLNGIKQSSDSLLVIINDILDISKIEAGKVELEHEPFSVVELVNNVHTIMQFKAEEKG 592

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILR 740
           + +          +  D   ++QI LN++ NAI FT  G  +  S       +   V   
Sbjct: 593 LGLLKDIPTENLTVQGDATRLRQILLNLIGNAIKFTEKG-LVTTSVKSEQVGDKINVHFT 651

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V DTG+G+    + K  + F Q  +    +  GTGLGL ++K +V+ + GK ++ S   K
Sbjct: 652 VSDTGIGIDADRMGKIFESFEQAYSDTSRKFGGTGLGLSISKKLVELHNGKIWVESEKGK 711

Query: 801 GTLIEIIF 808
           G+      
Sbjct: 712 GSQFHFTI 719


>gi|77361536|ref|YP_341111.1| sensory box sensor histidine kinase/response regulator
           [Pseudoalteromonas haloplanktis TAC125]
 gi|76876447|emb|CAI87669.1| putative Sensory box sensor histidine kinase/response regulator
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 1256

 Score =  310 bits (795), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 101/502 (20%), Positives = 193/502 (38%), Gaps = 34/502 (6%)

Query: 313 AYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
              +    L    ++  P   +  S  G     N +F      K  + +           
Sbjct: 409 EAKERHLALLNTVLNNVPDFIYFKSIDGLFLGCNKAFETFIGKKQAELVGKLI------- 461

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
                +N +     + + ++  +    ++     + E S  +T  PF    Q    +   
Sbjct: 462 -----ENESSDSKKISKLEQQVLHNRTQIQQRIDSAERSYLLTIAPFYNEQQQ--LLGVM 514

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
           GI  +  + +     ++    +  S +E  ++G+ +++ +  IL  N+A  +L       
Sbjct: 515 GIGRDITEQQQTLHALKESETKFRSAIEFAANGVVLLSLDHTILQANKAAREL-SSEQNL 573

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
           +   P            +   L ++L+   R     +  G   +   LS+ ++  +    
Sbjct: 574 LAGAPLNRVFSNPQWQEIKATLAQLLNNKKRVYHLTLAHGELADWLQLSVSLVWNENAEP 633

Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
             Y + + DIS   +        K  AE+ +  KS F+A +SHEIRTPL A+ G  +++ 
Sbjct: 634 LYYVIHIQDISILTKA-------KHDAERATLAKSRFIANLSHEIRTPLNAVFGLLDMLI 686

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
            Q   P    + +E       + + +L ++N +LD +++ES    L   P S+ E V   
Sbjct: 687 EQGLTP----KQLEQTAQAKHAAHSLLLMLNRMLDFARVESVAAQLKLAPFSIVELVDIC 742

Query: 672 ISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
            SL       K I +       I P ++ D   ++Q+  N+L+NA+ FT +G  I +   
Sbjct: 743 ESLTAPLCENKGIELIIDIDPLISPNLICDSIRLQQVLGNLLTNAVKFTKTGS-ITLKMD 801

Query: 731 H-----TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
                 +  + +  +V DTGVG+   +  +    F Q   S      G GLGL + K+ V
Sbjct: 802 LLPSDTSEQQHICFKVIDTGVGIDKADQRRLFDAFTQGDESSTRTHHGVGLGLAIVKSAV 861

Query: 786 DANMGKFYIFSTPAKGTLIEII 807
               G+  + S   +G      
Sbjct: 862 LLMGGEIALNSEKGEGCEFYFS 883



 Score = 47.3 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/161 (12%), Positives = 43/161 (26%), Gaps = 10/161 (6%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144
           F +     G     ++     IG    +++G  +       +   ++     L++Q    
Sbjct: 428 FIYFKSIDGLFLGCNKAFETFIGKKQAELVGKLIE------NESSDSKKISKLEQQVLHN 481

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
                  I+  +      L   P Y+  ++  G  G G               K  + KF
Sbjct: 482 RTQIQQRID--SAERSYLLTIAPFYNEQQQLLGVMGIG--RDITEQQQTLHALKESETKF 537

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE 245
               E       +    + I         L  +  + +   
Sbjct: 538 RSAIEFAANGVVLLSLDHTILQANKAARELSSEQNLLAGAP 578


>gi|298375360|ref|ZP_06985317.1| hybrid sensory kinase [Bacteroides sp. 3_1_19]
 gi|298267860|gb|EFI09516.1| hybrid sensory kinase [Bacteroides sp. 3_1_19]
          Length = 793

 Score =  310 bits (795), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 108/517 (20%), Positives = 196/517 (37%), Gaps = 52/517 (10%)

Query: 334 FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA-PKLSDNNAIKPVMLYRSD-- 390
            +  H  L +AN  +  +  Y   +          L    P L      +   +   +  
Sbjct: 25  LLDEHFTLLWANDFYYDMIGYPKEE-------YEALFHNKPDLYFKGYDEAWNILSKNVY 77

Query: 391 ----RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
                        +       +    +T    ++             + EDV  R  ++ 
Sbjct: 78  ETIANKASGYETVIQMPTRKGKRWTKITSTFTDQLQDGIPISYTVMTDVEDVMRRRIEQT 137

Query: 447 MEIEVMQLCSILEATSDGI----AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
           +           +     I       +    +L  N       G      L       L+
Sbjct: 138 I---------TYDNIPGFISKHKVHKDGSFTLLEANDKYMDFSGIDKNSFLSFSPFSRLD 188

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII---IKKLPFSSCYSLT-- 557
           + + + MN ++  +L     + +  +     K      L++    I        Y +   
Sbjct: 189 ETSRNTMNAHIPCMLKG---EPVHFVIQSKDKNGNGAWLQLNGECIGWEGDEPIYLIVYI 245

Query: 558 -MHDISEWKQEKNKLSHAKKI-------AEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
            + DI+E ++ + KL    K        AE+ +  KSDFLAR+SH+IRTP+ AI+G + +
Sbjct: 246 NITDITEQRELQKKLEKQSKQLKEALKSAEQANQAKSDFLARMSHDIRTPMNAIMGMATI 305

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
            K          R ++    I+ +  L+L ++N++LD+SKIESG++ L  +  ++ E + 
Sbjct: 306 AKAHVD---ERERILDCMEKINGASKLLLSLINEVLDMSKIESGRLILSEDEFNVGELLQ 362

Query: 670 EAISLVQLYANEKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
           + + ++Q     K+  +     N     +  D + +KQ+ +NILSNAI +TP  G+I I 
Sbjct: 363 DLVVMMQPEIKNKQQTLNIHVKNLRHENVKGDTQRIKQVLMNILSNAIKYTPENGRITIE 422

Query: 729 TTHTSN----EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
                             D G GM    L+K  +PF +  + +  R +GTGLG+ ++  +
Sbjct: 423 IYEKDPHNGIGNYQFVFEDNGRGMKPEFLDKIFEPFERASDDEIKRIQGTGLGMSISHKI 482

Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPLY-DTSHPHDCI 820
           +    G   + S   KG+   I  PL      P D I
Sbjct: 483 IQMMGGDIKVESEYGKGSRFTIDMPLVCRDQKPDDKI 519


>gi|255013997|ref|ZP_05286123.1| two-component hybrid sensor kinase/response regulator [Bacteroides
           sp. 2_1_7]
 gi|256839663|ref|ZP_05545172.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
 gi|256738593|gb|EEU51918.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
          Length = 793

 Score =  310 bits (795), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 108/517 (20%), Positives = 196/517 (37%), Gaps = 52/517 (10%)

Query: 334 FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA-PKLSDNNAIKPVMLYRSD-- 390
            +  H  L +AN  +  +  Y   +          L    P L      +   +   +  
Sbjct: 25  LLDEHFTLLWANDFYYDMIGYPKEE-------YEALFHNKPDLYFKGYDEAWNILSKNVY 77

Query: 391 ----RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
                        +       +    +T    ++             + EDV  R  ++ 
Sbjct: 78  ETIANKASGYETVIQMPTRKGKRWTKITSTFTDQLQDGIPISYTVMTDVEDVMRRRIEQT 137

Query: 447 MEIEVMQLCSILEATSDGI----AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
           +           +     I       +    +L  N       G      L       L+
Sbjct: 138 I---------TYDNIPGFISKHKVHKDGSFTLLEANDKYMDFSGIDKNSFLSFSPFSRLD 188

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII---IKKLPFSSCYSLT-- 557
           + + + MN ++  +L     + +  +     K      L++    I        Y +   
Sbjct: 189 ETSRNTMNAHIPCMLKG---EPVHFVIQSKDKNGNGAWLQLNGECIGWEGDEPIYLIVYI 245

Query: 558 -MHDISEWKQEKNKLSHAKKI-------AEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
            + DI+E ++ + KL    K        AE+ +  KSDFLAR+SH+IRTP+ AI+G + +
Sbjct: 246 NITDITEQRELQKKLEKQSKQLKEALKSAEQANQAKSDFLARMSHDIRTPMNAIMGMATI 305

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
            K          R ++    I+ +  L+L ++N++LD+SKIESG++ L  +  ++ E + 
Sbjct: 306 AKAHVD---ERERILDCMEKINGASKLLLSLINEVLDMSKIESGRLILSEDEFNVGELLQ 362

Query: 670 EAISLVQLYANEKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
           + + ++Q     K+  +     N     +  D + +KQ+ +NILSNAI +TP  G+I I 
Sbjct: 363 DLVVMMQPEIKNKQQTLNIHVKNLRHENVKGDTQRIKQVLMNILSNAIKYTPENGRITIE 422

Query: 729 TTHTSN----EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
                             D G GM    L+K  +PF +  + +  R +GTGLG+ ++  +
Sbjct: 423 IYEKDPHNGIGNYQFVFEDNGRGMKPEFLDKIFEPFERASDDEIKRIQGTGLGMSISHKI 482

Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPLY-DTSHPHDCI 820
           +    G   + S   KG+   I  PL      P D I
Sbjct: 483 IQMMGGDIKVESEYGKGSRFTIDMPLVCRDQKPDDKI 519


>gi|269836401|ref|YP_003318629.1| PAS/PAC sensor signal transduction histidine kinase [Sphaerobacter
           thermophilus DSM 20745]
 gi|269785664|gb|ACZ37807.1| PAS/PAC sensor signal transduction histidine kinase [Sphaerobacter
           thermophilus DSM 20745]
          Length = 598

 Score =  310 bits (795), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 101/584 (17%), Positives = 209/584 (35%), Gaps = 39/584 (6%)

Query: 238 NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297
            ++ +  E  A    +                  Q+    I+       Q    L ++  
Sbjct: 38  QELRARLESQAWLVALAAAPMIGTTEEPNLQEFAQDAAGQIDARVTIIDQEGRVLGDSEA 97

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP-----IPFFVYSHGNLFYANPSFLLLT 352
                 +H + P ++A        +    D        +   +   G    A    L   
Sbjct: 98  APATMENHADRPEVAAALSGQIGESSRPSDTLDRTLIYLAVPIVRDGEQLGAARVAL--- 154

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
                D          +  A  L         +            + L            
Sbjct: 155 ---PSDQFAGWLRNIVVAVAAALGIAALAIAALSAILAGVITRPLSELIQTARRIAQGDL 211

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG 472
               P     +  E           +   I    +E E  +L +I+E  +DGI I++ +G
Sbjct: 212 AARAPEHAGGEIAELSHAFNEMTTTLQANIE--AIEAERARLSAIVEHLTDGILIVDDQG 269

Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
            +   N A  +L G P + +L +P+ + +  +    +   + +  S D            
Sbjct: 270 QLALINNAAERLLGTPRDRLLNRPYALAVRDHD---LAEVIAQAHSGDEPVRRLFEIGQP 326

Query: 533 TKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
            +  + ++  I       ++   + + D++E ++                  + DF+A V
Sbjct: 327 RRYVEGVAYSIP----HRATPVVVILRDVTELRRT--------------DMIRRDFVANV 368

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHE+RTP+ ++    E + +            E+   ++   + +  +V DLL++S+ ES
Sbjct: 369 SHELRTPIASLKALVETLLDGAL--EDEEVAHEFLARMETEVDGLARLVQDLLELSRAES 426

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712
           G++ L      +     + I+ ++  A  K++ IR    + +     D   ++Q+ +N++
Sbjct: 427 GRLTLSPVAADIRRVAEQVIARLRTQAEPKKLDIRIEIPDGLTPGRFDPERIEQVLVNLV 486

Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
            NA+ FTP GG I +      +  +++ V DTG G+   + ++  + F +    +     
Sbjct: 487 HNAVKFTPPGGIITVGAAAEDD-HLVVWVADTGPGVAPEDRDRIFERFYKTD--RSRADA 543

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           GTGLGL +A+ +V+ + G+ ++  T   GT I+   PL     P
Sbjct: 544 GTGLGLSIARHLVELHGGRIWVDGTARPGTTIKFTLPLALEPAP 587


>gi|27379871|ref|NP_771400.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
           USDA 110]
 gi|27353024|dbj|BAC50025.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
           USDA 110]
          Length = 775

 Score =  310 bits (795), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 90/380 (23%), Positives = 166/380 (43%), Gaps = 26/380 (6%)

Query: 442 INKRKMEIEVMQLCSIL----EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
             + ++E +   +  +L    E  SD +   + EG ++      + +   P+  +    F
Sbjct: 227 KAQLELERQTEIISLLLKDFQENASDWLWQTDAEGHLVDVPERFADVAQLPLPLLKGSHF 286

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---- 553
              L+   P   +     +  ++  + L ++ L      +        K           
Sbjct: 287 ADVLDMLCPEDKSAAYNIVGLMEHAEPLHEMNLKVVAGGEARLWSFTAKPAYDRDGQFLG 346

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
           Y     D++E  + +         AE ES  KSDFLA +SHEIRTP+  ++G + ++   
Sbjct: 347 YRGFGRDVTERWRAEK--------AEAESRAKSDFLAVMSHEIRTPMNGVLGLASMLLET 398

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
           R     +P   E    I  SG+ +  I+ND+LD+SK+E+G+        +    V    +
Sbjct: 399 RL----DPEQREAVATIRESGDNLQRILNDILDLSKLEAGRFAFEAIDFAPHALVETVAT 454

Query: 674 LVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
           +V+  A  K + ++     N+P  +  D+  ++Q+ LN+ SNA+ FT  G ++ IS T  
Sbjct: 455 VVRASAKSKGLTVKVELDPNLPPTLRGDVARIRQVLLNLASNAVKFTDEG-EVTISATCQ 513

Query: 733 SNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
           +  +    V   V+D+G+G+   +L      F Q   S   R  GTGLGL +++ +++  
Sbjct: 514 TRRDLLATVEWTVKDSGIGIAPEKLGLLFSDFAQADASISRRFGGTGLGLAISRRIIEQM 573

Query: 789 MGKFYIFSTPAKGTLIEIIF 808
            G   + STP +G+      
Sbjct: 574 GGTIGVTSTPGEGSTFRFTL 593



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 49/377 (12%), Positives = 95/377 (25%), Gaps = 19/377 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD---ILHIDPNNHIGDLLKRQNT 142
            W  DA G+L ++ E            + G    DV D           +I  L++    
Sbjct: 254 LWQTDAEGHLVDVPERFADVAQLPLPLLKGSHFADVLDMLCPEDKSAAYNIVGLMEHAEP 313

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
              +  L  + G    +     A P Y R+ +F G+RGFG                    
Sbjct: 314 L-HEMNLKVVAGGEARLW-SFTAKPAYDRDGQFLGYRGFG--RDVTERWRAEKAEAESRA 369

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
           K   L  +      +      +    S     R+  +            D L+     +L
Sbjct: 370 KSDFLAVMS---HEIRTPMNGVLGLASMLLETRLDPEQREAVATIRESGDNLQRILNDIL 426

Query: 263 TSEESSLPEQEDFHTIN-LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
                    +  F  I+       +     ++ ++K     +     P+L          
Sbjct: 427 -DLSKLEAGRFAFEAIDFAPHALVETVATVVRASAKSKGLTVKVELDPNLPPTLRGDVAR 485

Query: 322 TPE-TVDKCPIPFFVYSHGNLFY-ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
             +  ++           G +   A               ++ +G          L  + 
Sbjct: 486 IRQVLLNLASNAVKFTDEGEVTISATCQTRRDLLATVEWTVKDSGIGIAPEKLGLLFSDF 545

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
           A     + R         A    I      ++ +T  P               + P    
Sbjct: 546 AQADASISRRFGGTGLGLAISRRIIEQMGGTIGVTSTP-----GEGSTFRFTLVLPWSQA 600

Query: 440 TRINKRKMEIEVMQLCS 456
              ++     E  +L +
Sbjct: 601 PASDQAAGRDEADELKA 617


>gi|325522177|gb|EGD00827.1| signal transduction histidine kinase with CheB and CheR activity
            [Burkholderia sp. TJI49]
          Length = 1219

 Score =  310 bits (795), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 112/684 (16%), Positives = 219/684 (32%), Gaps = 39/684 (5%)

Query: 144  YGKTTLWPIEGTNLYVPID-LAALP----IYSRNREFSGFRGF---GIVHVNRVDNDPRA 195
                     E     + +   A  P    +  R    SG  GF   G  H+ R     + 
Sbjct: 412  RNLLIYLRKEAQQHVLEVLHYACRPDGFVLLGRAEAVSGTDGFEHAGAPHLYRKVPAAKR 471

Query: 196  LGKRLDKKFSHL---HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD 252
                             +      V++    + +                  +       
Sbjct: 472  QQGAFPIDALRPWASQGVAPSVRRVQQPDPVLEAANRAALERYAPPGFVVDDKGDVVHFR 531

Query: 253  VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR--NHPS 310
               +      + E S    +     +N+   T         +  +     L         
Sbjct: 532  GDVSGFVAPASGEASLALPRLLRPELNVTVRTALIEAKRTGHPVRRERVALDDAYFALEV 591

Query: 311  LSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
            L    D+       TV++ P             A+          S +       L   +
Sbjct: 592  LPLAADDLVPHYLVTVERLP-------------ADAPAPQSAGAGSAN--GRVQELERTI 636

Query: 371  DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
                         +    ++        R    +    N    +        +       
Sbjct: 637  TTLSDELEATQGQLKSVVAEFESANEELRTANEEMLSTNEELQSANEELLLAKQELESAN 696

Query: 431  NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490
              +   + + +   ++++     L +++E     + +++R+  +   +     LF  P +
Sbjct: 697  QELASLNEELKSRNQQLDRANDDLSNLVEGIPLPVVVLDRQLRLRHFSPQAQTLFALPDD 756

Query: 491  DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
                      + Q         L  ++   ++   +        E +   + +   +   
Sbjct: 757  -----SVGQPMAQQNKLFSAADLERVVQSAVQGLADVEHEYQDSEGRWWLVNVRAYRTAD 811

Query: 551  SS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                   L   DI   K+       A+  AE+ ++ K +FL  VSHE+R PL  I G++ 
Sbjct: 812  DRIDGAVLAFQDIDALKRALGTAQAARTEAERANTAKDNFLGLVSHELRAPLNVISGWAA 871

Query: 609  VIK--NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
            V+   ++R  P            I R   L  ++++DLLD+S+I SG+ +L  +P     
Sbjct: 872  VLATASERGMPADEQMSQRAVTTIMRHCQLQAELIDDLLDVSRISSGRFSLDTKPADFAA 931

Query: 667  AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726
             V   +   +  A  K I + T+  N    +  D R ++Q+A N++ NA+ FTP GG++ 
Sbjct: 932  IVQTVVESNRPVAARKEISLATAGLNARAVVSGDARRLQQVASNLIGNALKFTPQGGRVE 991

Query: 727  ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
            ++ T      + L V D G+G++  +L      F Q   S+     G GLGL + K +V 
Sbjct: 992  VALT-RLGTMLELSVTDNGIGVSAEQLPYLFDRFMQSDTSRTRNYGGLGLGLSIVKHLVT 1050

Query: 787  ANMGKFYIFST-PAKGTLIEIIFP 809
            A+ G     S    +GT + +  P
Sbjct: 1051 AHGGTVTASSEGEGRGTRLTVRLP 1074


>gi|289551852|ref|YP_003472756.1| Two-component sensor kinase SA14-24 [Staphylococcus lugdunensis
           HKU09-01]
 gi|315659977|ref|ZP_07912835.1| sensor histidine kinase VicK [Staphylococcus lugdunensis M23590]
 gi|289181383|gb|ADC88628.1| Two-component sensor kinase SA14-24 [Staphylococcus lugdunensis
           HKU09-01]
 gi|315494878|gb|EFU83215.1| sensor histidine kinase VicK [Staphylococcus lugdunensis M23590]
          Length = 607

 Score =  310 bits (795), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 80/387 (20%), Positives = 174/387 (44%), Gaps = 27/387 (6%)

Query: 426 ENMPQNGIEPEDVDTRINKRKM--EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           + + +  +   ++  R+ + +   E E  +L S++   SDGI   +R G +   N    K
Sbjct: 234 DEIGELALAFNNLSKRVQEAQANTESEKRRLDSVITHMSDGIIATDRRGRVRIINDMALK 293

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           + G   ED++       L       ++       S  L    E+  +        ++   
Sbjct: 294 MLGMAKEDLIGYYMLSVLNLEQEFSLDEIQENNDSFLLDINEEEGIIAR------VNFST 347

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
           I+++  F + Y   +HD++E +Q + +              + +F+A VSHE+RTPLT++
Sbjct: 348 IVQETGFVTGYIAVLHDVTEQQQVERE--------------RREFVANVSHELRTPLTSM 393

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
             + E +++  +          + +        ++ +VNDLL +SK+++    ++ E V 
Sbjct: 394 NSYIEALESGAWKDGALAPQ--FLSVTREETERMIRLVNDLLQLSKMDNESDQINKEIVD 451

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
            +  +++ I+  ++ A  K         N       D   + Q+  N+++NA+ ++    
Sbjct: 452 FNMFINKIINRHEMSA--KDTTFVREIPNETIFAEIDPDKMTQVFDNVITNAMKYSRGDK 509

Query: 724 QIIISTTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
           ++       +    + +R++D G+G+   ++EK    F ++  ++  +  GTGLGL ++K
Sbjct: 510 RVEFHVKQNALYNRMTIRIKDNGIGIPINKVEKIFDRFYRVDKARTRKMGGTGLGLAISK 569

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFP 809
            +V+A+ G+ +  S   +GT I I  P
Sbjct: 570 EIVEAHHGRIWANSVEGQGTSIFITLP 596


>gi|309790728|ref|ZP_07685277.1| multi-sensor signal transduction histidine kinase [Oscillochloris
           trichoides DG6]
 gi|308227219|gb|EFO80898.1| multi-sensor signal transduction histidine kinase [Oscillochloris
           trichoides DG6]
          Length = 708

 Score =  310 bits (795), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 105/661 (15%), Positives = 219/661 (33%), Gaps = 73/661 (11%)

Query: 186 VNRVDNDPRALGKRLDKKFSHLH-------EIKKGHSSVEKEKYDIFSQQSPPPHLRMKN 238
           +    ND  +  + L+              E++    S+ +        +     LR++ 
Sbjct: 83  MITSLNDAESRLRSLEVGADDFITKPIDFIELRARVGSILRLNRYRRLLEERTQRLRVEE 142

Query: 239 KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQED---FHTINLNQYTKKQYFGTLQNN 295
           ++       +  +  + +    L TS  +                    +       Q  
Sbjct: 143 EMMRRNRELSLLNAFIISTAAKLQTSHHAEESLHHACTVLVQALDLARAEGWMLLEPQAE 202

Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYK 355
             ++F        P         +      +    +  +V   G      P+        
Sbjct: 203 LMQAFVSDEPNPEPQQRMVISAEQAQL--LIHDEAVTSWVAR-GTPLDTAPA-------T 252

Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
           S D +    G S L+  P          + L  SD   +    R             ++ 
Sbjct: 253 STDWLMRYYGKSPLIA-PITIKGRVAGMIALLPSDNRLLDMQERAFAQS-------LISA 304

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
           +             Q   E  +    +   +++ E  +  +ILEA  + + + + E II 
Sbjct: 305 LSQSIETSLLHQQLQRHAEHLEETVAMRTNELQAERDRTQAILEALGEAVIVTDAECIIS 364

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
             N + + L GY   +++ + +    +  + S++   +   +     +      L S ++
Sbjct: 365 YVNPSATLLTGYSSSEMIGRSWCTMQQNESASLLYRAIRNHVRTG--RMWRGEVLSSRRD 422

Query: 536 EKLLSLRIIIKKLPFSS------CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
                  + +  +                 DI+  K  +                K  F+
Sbjct: 423 GSTYDAALTVAPIFEPQRTTSPIGMVSIQRDITPLKVAE--------------RMKDQFI 468

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
           + VSHE+RTPL+ I   S  + +  +  L + +  +    +      + D++ D+L++S+
Sbjct: 469 SNVSHELRTPLSIIALHSGNL-DTLYDRLNDGQRRQLIREVRAQVERLDDLIGDILELSR 527

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709
           I+SG++ +    V+L + + +    ++  A  K   +       +  +  D   + Q   
Sbjct: 528 IDSGQLRIEDRRVNLADVLRQEAEQLRPLAERKNQHLELVLDEQL-NLHGDPAHLGQCVR 586

Query: 710 NILSNAIHFTPSGGQIIISTTHTS-------------------NEEVILRVRDTGVGMTN 750
           N++SNAI +TP GGQI                                LRV DTG+G+  
Sbjct: 587 NLISNAIKYTPQGGQISCECRRIDPSNNDLNAQDWPDYNPSDSGAWAGLRVVDTGIGIAP 646

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             +    + F ++ N    R  GTGLGL + + ++  + G   + S P  G++     PL
Sbjct: 647 EHIGHLFERFYRVQNQT--RVPGTGLGLAITRELITRHGGWTAVASQPGVGSIFAFYVPL 704

Query: 811 Y 811
            
Sbjct: 705 A 705



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/216 (12%), Positives = 59/216 (27%), Gaps = 6/216 (2%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID-PNNHIGDLLKRQNTWYGKT 147
            DA   +  ++       G  + +MIG   C +            I + ++    W G+ 
Sbjct: 357 TDAECIISYVNPSATLLTGYSSSEMIGRSWCTMQQNESASLLYRAIRNHVRTGRMWRGEV 416

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                +G+     + +A  PI+   R  S      I            +  +     SH 
Sbjct: 417 LSSRRDGSTYDAALTVA--PIFEPQRTTSPIGMVSIQRDITPLKVAERMKDQFISNVSHE 474

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
                   ++     D    +      R   ++         + D L  +   L   +  
Sbjct: 475 LRTPLSIIALHSGNLDTLYDRLNDGQRR---QLIREVRAQVERLDDLIGDILELSRIDSG 531

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303
            L  ++    +      + +    L     +  E +
Sbjct: 532 QLRIEDRRVNLADVLRQEAEQLRPLAERKNQHLELV 567


>gi|91793353|ref|YP_563004.1| ATP-binding region, ATPase-like protein [Shewanella denitrificans
           OS217]
 gi|91715355|gb|ABE55281.1| PAS/PAC sensor signal transduction histidine kinase [Shewanella
           denitrificans OS217]
          Length = 856

 Score =  310 bits (795), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 104/487 (21%), Positives = 202/487 (41%), Gaps = 30/487 (6%)

Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
                 G +   + +   +  +   + I     L+ L+  P  S+++         ++  
Sbjct: 369 VTASRSGIIESFSKAAEHIFGWSEQEVIGKN--LTLLMPEPFQSEHDGYLHRYHKANESK 426

Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
            I     +     N         +   + N     +   G   E    R  +        
Sbjct: 427 VIGVERLVKGKHKNGFIIDIKLAVLASEINGRSIFIGFIGDMSETETLRFER-------- 478

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
              +  + + + I +I+ +G     N++   L GY +E++L  PF  FL     +     
Sbjct: 479 --ETFFDISPELICLISADGYFKQVNQSWCNLLGYNMEELLNTPFADFLHPEDRASGMDE 536

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572
           + ++ +    +T+        K       +        +     +  D+++ K ++  L 
Sbjct: 537 MNKLQTPGY-RTVNFDNRYRDKSGAYHWFQWNAVLNHGNDIIYASARDVTKEKNQQQFLQ 595

Query: 573 HAKKIAEKESS-------HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
              +     ++        KS F+A +SHE+RTPL +IIGFS V+     G L     ++
Sbjct: 596 QTNEKMRLVNTKLQQLDGLKSMFIATMSHELRTPLNSIIGFSSVMLQGLSGQLTG-VQVD 654

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           +   I ++   +L I++D++D+SKIE+ + +   E   L E   E I+L    + + +I 
Sbjct: 655 HLTRIHKASQHLLTIISDIIDVSKIEAERFDSANESFYLHEVAQEVITLAHGLSMQYKIA 714

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +    +  +  +  DLR VKQ+ LN++SNAI ++  G Q+ I+ +      +++ V D G
Sbjct: 715 VVMVISQELI-LFTDLRRVKQVLLNLVSNAIKYSLQG-QVTITASVE-GLNILMSVIDQG 771

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM---GKFYIFSTPAKGT 802
           +G+   ++    KPF ++   +  R  GTGLGL L K +VD      G   + S+   G+
Sbjct: 772 IGIREQDIPALFKPFSRLDAMRVERS-GTGLGLYLTKKIVD--GILLGSITVTSSVGVGS 828

Query: 803 LIEIIFP 809
             E+I P
Sbjct: 829 RFEVIIP 835



 Score = 78.1 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 28/182 (15%), Positives = 74/182 (40%), Gaps = 6/182 (3%)

Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
               RL  I       + +T + +    +         +           + +E +   L
Sbjct: 298 PFRHRLFLIVLAFGLFIMITIVFYVYRLETDRVKLNLAVSAATDKLLYANQTVEQQKNYL 357

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
             I+ ++ +GI   +R GII S ++A   +FG+  ++++ K  T+ + +   S  + YL 
Sbjct: 358 KEIINSSINGIVTASRSGIIESFSKAAEHIFGWSEQEVIGKNLTLLMPEPFQSEHDGYLH 417

Query: 515 EILSLDLRQTL--EKITLGSTKEEKLLSLRIII--KKLPFSSCYSLTMHDI--SEWKQEK 568
                +  + +  E++  G  K   ++ +++ +   ++   S +   + D+  +E  + +
Sbjct: 418 RYHKANESKVIGVERLVKGKHKNGFIIDIKLAVLASEINGRSIFIGFIGDMSETETLRFE 477

Query: 569 NK 570
            +
Sbjct: 478 RE 479



 Score = 46.2 bits (108), Expect = 0.022,   Method: Composition-based stats.
 Identities = 15/114 (13%), Positives = 33/114 (28%), Gaps = 5/114 (4%)

Query: 59  QESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRL 118
             S + T   + E  F   P    +     I A GY K++++     +G    +++    
Sbjct: 467 DMSETETLRFERETFFDISPELICL-----ISADGYFKQVNQSWCNLLGYNMEELLNTPF 521

Query: 119 CDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172
            D              + L+              + +  Y      A+  +  +
Sbjct: 522 ADFLHPEDRASGMDEMNKLQTPGYRTVNFDNRYRDKSGAYHWFQWNAVLNHGND 575


>gi|150016010|ref|YP_001308264.1| multi-sensor signal transduction histidine kinase [Clostridium
           beijerinckii NCIMB 8052]
 gi|149902475|gb|ABR33308.1| multi-sensor signal transduction histidine kinase [Clostridium
           beijerinckii NCIMB 8052]
          Length = 568

 Score =  310 bits (795), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 81/367 (22%), Positives = 160/367 (43%), Gaps = 35/367 (9%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           R++     ++ SIL++   G+  ++   +++S N     L G     +        L+  
Sbjct: 233 REVIDNQNKIESILKSMESGVIAVDNCNMVISINPCAESLLGIKKNIVG----ECLLDHI 288

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-CYSLTMHDISE 563
               +  +L +          +K        E+   ++              +T  DI++
Sbjct: 289 KDYDIIKFLEQ------DDVSDKEIKIRHPIERDFKIKKSAMVDGMEGVGKVITFQDITD 342

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + +                +S F+A VSHE++TPLT+I GF+E +K        +   
Sbjct: 343 INRVE--------------LMRSQFVANVSHELKTPLTSIKGFAETLK----FVKDDETR 384

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            ++ + ID+    +  ++ND+L +S IES  + +          + E I++++  A  K 
Sbjct: 385 EKFLDIIDKEAERLSRLINDILVLSNIESN-LAVDMHEFEPGSVIEEVINIMRKTAINKN 443

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS-GGQIIISTTHTSNEEVILRVR 742
           I +     NN  +I  D     Q+ALN++ NAI ++    G++ +  ++  ++   LRV+
Sbjct: 444 IKLEFK-DNNSEKIFGDRDKFHQLALNLIENAIKYSKDTSGKVEV-LSYNEDKYYCLRVK 501

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G+G+   ++ +  + F ++  S   +  GTGLGL + K +V    G+ Y+ S    GT
Sbjct: 502 DNGIGIPKEDISRIFERFYRVDKS--RKKGGTGLGLAIVKHIVKIFNGEIYVKSELGVGT 559

Query: 803 LIEIIFP 809
             E+  P
Sbjct: 560 CFEVKIP 566


>gi|303247196|ref|ZP_07333470.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
 gi|302491355|gb|EFL51243.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
          Length = 930

 Score =  310 bits (795), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 106/560 (18%), Positives = 191/560 (34%), Gaps = 63/560 (11%)

Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKY 354
            +                     E L     +       + S  G    AN +      Y
Sbjct: 116 VRSLAAIEDITMRRQAEQALAASEELFRMAFESANEGLCILSPEGRFLRANEALCEFLGY 175

Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
            + +    A   +  L  P    ++A         +        R           +   
Sbjct: 176 PAEEL---ATMTAFELTHPDDRVSSARLVARAVSGEVEHFRFEKRYF---HASGRVIWGR 229

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE--------------- 459
                  +             +  ++R N  K+ +    L  +L                
Sbjct: 230 VSARLVRDAAGSPRYIISHILDVTESRRNAGKIALHTKTLEVLLRLGRMREAGLSQLGTY 289

Query: 460 ATSDGIAIIN-REG------------IILSTNRAVSKLFGYPV---------------ED 491
           A S  +A+    +G             +L+ +      FG P                  
Sbjct: 290 ALSQAVALTGSADGLIALFEPARETFRLLAAHPGALSAFGMPPGAQSFDARRIEPFSTAW 349

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
           + ++P         P   +     ++     +   ++ +    +++      + + +   
Sbjct: 350 LSQQPVISNTPPTVPEAQSLPWRSLVVPVEGEGENRLLIVVIDKDEPYDDADVHRLILLG 409

Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
                 + D    +  +  L  A+K AE  S  KS FLA +SHEIRTPL+ IIG +++  
Sbjct: 410 EGVLGHVKD----RARERDLERARKQAEAASRAKSGFLANMSHEIRTPLSGIIGLTQM-- 463

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
                    P   E+   I  S   +L IVND+LD SKIE+GKM        L E +   
Sbjct: 464 --TLSQTPRPEVREHLELILDSSRSLLAIVNDILDFSKIEAGKMEFSPVDFDLREILDRT 521

Query: 672 ISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
           +      + +K + +    A  +P IL  D   + Q+  N++ NA+ FT  G ++ +   
Sbjct: 522 MKPFHFSSRQKGLRLSLRIAQELPDILHGDPDRIMQVVRNLVGNALKFTDKG-EVAVEFR 580

Query: 731 HTSNEE---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
                +   V   VRDTG+G+    L +  + F Q+ +S+  R  GTGLGL +++ +V+ 
Sbjct: 581 LLRPGDPMLVECSVRDTGIGIPEERLPELFQVFSQLESSRTKRYGGTGLGLAISRRLVEM 640

Query: 788 NMGKFYIFSTPAKGTLIEII 807
             G   + S P +G++    
Sbjct: 641 MGGTIGVRSRPGQGSVFSFT 660



 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 29/256 (11%), Positives = 80/256 (31%), Gaps = 13/256 (5%)

Query: 316 DEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
           D+  +       K P+    V + G L   N  +L    Y   D +              
Sbjct: 10  DKAPHGLGPLYVKAPVMLHSVDATGCLLAVNDRWLENLGYAREDVLGR-------FLGDF 62

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
            ++ + ++ +            S   +T+       + +      + +     +      
Sbjct: 63  FTEASKVEYMRNLACFVREGRISELPYTMLSKDGRPIDILLSSVGEYDGHGRFVRSLAAI 122

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
            +    R  ++ +           E+ ++G+ I++ EG  L  N A+ +  GYP E++  
Sbjct: 123 EDITMRRQAEQALAASEELFRMAFESANEGLCILSPEGRFLRANEALCEFLGYPAEELAT 182

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC- 553
                    +        +   +S ++               +++  R+  + +  ++  
Sbjct: 183 MTAFELTHPDDRVSSARLVARAVSGEVEH-FRFEKRYFHASGRVIWGRVSARLVRDAAGS 241

Query: 554 ---YSLTMHDISEWKQ 566
                  + D++E ++
Sbjct: 242 PRYIISHILDVTESRR 257



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/374 (9%), Positives = 89/374 (23%), Gaps = 31/374 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH-IDPNNHIGDLLKRQ-NTWYGK 146
           +   G     +E L + +G  A ++  M   +++     +     +   +  +   +  +
Sbjct: 156 LSPEGRFLRANEALCEFLGYPAEELATMTAFELTHPDDRVSSARLVARAVSGEVEHFRFE 215

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK-RLDKKFS 205
              +   G  ++  +  +A  +            + I H+  V    R  GK  L  K  
Sbjct: 216 KRYFHASGRVIWGRV--SARLVRDAAGSPR----YIISHILDVTESRRNAGKIALHTKTL 269

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
            +             +   ++           + + +L E       +L      L    
Sbjct: 270 EVLLRLGRMREAGLSQLGTYALSQAVALTGSADGLIALFEPARETFRLLAAHPGALSAFG 329

Query: 266 ESSLPEQEDFHTI---------------NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310
                +  D   I               N      +      ++          +R    
Sbjct: 330 MPPGAQSFDARRIEPFSTAWLSQQPVISNTPPTVPEAQSLPWRSLVVPVEGEGENRLLIV 389

Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
           +    +  ++     +         +       A    L   + ++        G    +
Sbjct: 390 VIDKDEPYDDADVHRLILLGEGVLGHVKDR---ARERDLERARKQAEAASRAKSGFLANM 446

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK----ANQFPE 426
                +  + I  +      +T          +  +   SL                  E
Sbjct: 447 SHEIRTPLSGIIGLTQMTLSQTPRPEVREHLELILDSSRSLLAIVNDILDFSKIEAGKME 506

Query: 427 NMPQNGIEPEDVDT 440
             P +    E +D 
Sbjct: 507 FSPVDFDLREILDR 520


>gi|196231316|ref|ZP_03130175.1| multi-sensor signal transduction histidine kinase [Chthoniobacter
           flavus Ellin428]
 gi|196224652|gb|EDY19163.1| multi-sensor signal transduction histidine kinase [Chthoniobacter
           flavus Ellin428]
          Length = 895

 Score =  310 bits (795), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 132/799 (16%), Positives = 260/799 (32%), Gaps = 83/799 (10%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP----NNHIGDLLKRQNTWY 144
            DA G +  ++    +  G    +     L  V   L        +N I  +++      
Sbjct: 83  TDAAGRVTFMNNIAQELTGWKEGEAEQKPLVKVFQTLDRKARQPTDNPIDLVVREGRAIT 142

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
               +  I        +   A PI   +   +G     + H         +  +   + F
Sbjct: 143 SIEPVLLIARDGAEHIVVSKATPIRDADGAVTGV--VFVFHDVTQRELAESALRASQEMF 200

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE---YYAHKDDVLKTEKYPL 261
             + +      +V                     +   LT         D       +  
Sbjct: 201 RLITDHISDLVAVLDLHGRRLYASESHSQFIAPARELYLTPAFEEIHPDDRERLRRLFAE 260

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL----SHRNHPSLSAYFDE 317
           + S   S   +      N   +  +     +++   ++ + L             A    
Sbjct: 261 IASTGGSQRAEFRLIGRNGQVFCMESVLTLIRSAEGQAEKVLMVSRDMSERQRAEARVHS 320

Query: 318 GENLTPETVDKCPIPFFVYSHG--NLFYANPSFLLLTKYKS-----VDDIEIAGGLSTLL 370
               +   ++  P  F++Y      +   N +   +T Y++     +D +          
Sbjct: 321 EMQFSDTLINSMPGIFYLYRGADRKILRWNKNLETVTGYRAAEIETLDALSYFPEEEKPF 380

Query: 371 DAPKL----SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
              ++    ++ +A   V L   +            I  +    +    I          
Sbjct: 381 VHERMLKCFAEGSADIEVNLLAKNGRRTPFYVTGFRIDIDGRPCMLGIGIDITARLAAEG 440

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEV--MQLCSILEATSDGIA-IIN-REGIILSTNRA-- 480
            +          +  + ++         +L + L   ++  A  ++     I   N A  
Sbjct: 441 ALRATMFRLTRQNAVLGEKARNARSLGAELSASLRIITELAAETLDVSRASIWFYNEAQT 500

Query: 481 ---VSKLFGYPVED-------------------ILRKPFTVFLEQNTPSVMNHYLTEILS 518
               + LF                            +          P       T +  
Sbjct: 501 KICCADLFEKDKGQHSSGIELTAADFPIYFKALAEERVIAAGHAPTDPRTGEFDATYLHP 560

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKL---PFSSCYSLTMHD-------ISEWKQEK 568
           L +   L+    GS K   ++      +     P    ++ +M D       + + +Q +
Sbjct: 561 LGIHSMLDAPIRGSGKMVGVICHEHTGEPREWQPDEESFAGSMADLVALSLEVEQRRQAE 620

Query: 569 ------------------NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
                               L  A +  ++    KS+FLA +SHE+RTPL ++IGF+ ++
Sbjct: 621 TALRETLDNLEHKVTERTRDLEAANERLQELDRLKSEFLATMSHELRTPLNSVIGFTGIL 680

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
           + +  GP+ N    +    +  S   +L+++NDLLD+S++ESGKM L  E   + + V E
Sbjct: 681 RQELAGPM-NDEQKKQLGMVHSSARHLLNLINDLLDLSRVESGKMELFLEDFVVADLVKE 739

Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
               +     +K++ + TS      RI  D     QI LN+ +NA+ FT  G ++ +  T
Sbjct: 740 IDQCLAPQVQQKKLRLETSLDQPTLRIRTDRNKSFQILLNLTNNAVKFTAVG-RVTLKVT 798

Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
            +  ++V   V DTG+G+    L    + F Q+  S +   EGTGLGL L+K +     G
Sbjct: 799 -SDADQVQFEVADTGIGIKPESLPHLFEAFRQVDGSARRVYEGTGLGLYLSKQLAKMLGG 857

Query: 791 KFYIFSTPAKGTLIEIIFP 809
              + S    G+   ++ P
Sbjct: 858 NITVESEFGIGSRFTLVLP 876



 Score =  105 bits (261), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 32/308 (10%), Positives = 85/308 (27%), Gaps = 10/308 (3%)

Query: 274 DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF 333
                     ++      +   +      LS        A     E      +       
Sbjct: 21  PLEKAEDRTSSQMLVLLAIMTITTAVVIILSTLRRRRDWARTHIREQWLATMLRSIGDGV 80

Query: 334 FVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
                 G + + N     LT +K  +  E    +       + +      P+ L   +  
Sbjct: 81  VATDAAGRVTFMNNIAQELTGWKEGEA-EQKPLVKVFQTLDRKARQPTDNPIDLVVREGR 139

Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
            I +   +  I  +      +        +          +  +     + +  +     
Sbjct: 140 AITSIEPVLLIARDGAE-HIVVSKATPIRDADGAVTGVVFVFHDVTQRELAESALRASQE 198

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
               I +  SD +A+++  G  L  + + S+    P  ++   P    +  +    +   
Sbjct: 199 MFRLITDHISDLVAVLDLHGRRLYASESHSQFIA-PARELYLTPAFEEIHPDDRERLRRL 257

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEK 568
             EI S    Q  E   +G     ++  +  ++  +  +        +   D+SE ++ +
Sbjct: 258 FAEIASTGGSQRAEFRLIGR--NGQVFCMESVLTLIRSAEGQAEKVLMVSRDMSERQRAE 315

Query: 569 NKLSHAKK 576
            ++    +
Sbjct: 316 ARVHSEMQ 323



 Score = 86.6 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/427 (8%), Positives = 105/427 (24%), Gaps = 29/427 (6%)

Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS 242
           I+   R   D      R     + L  I  G  + +      F           K   + 
Sbjct: 49  ILSTLRRRRDWARTHIREQWLATMLRSIGDGVVATDAAGRVTFMNNIAQELTGWKEGEAE 108

Query: 243 LTEYYAHKDDVLKTEKYP------LLTSEESSLPEQEDFH--TINLNQYTKKQYFGTLQN 294
                     + +  + P      L+  E  ++   E       +  ++        +++
Sbjct: 109 QKPLVKVFQTLDRKARQPTDNPIDLVVREGRAITSIEPVLLIARDGAEHIVVSKATPIRD 168

Query: 295 NSKESFEYL----SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFL 349
                   +             +     + +     D       V    G   YA+ S  
Sbjct: 169 ADGAVTGVVFVFHDVTQRELAESALRASQEMFRLITDHISDLVAVLDLHGRRLYASESHS 228

Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
                    ++ +      +    +         +    S      A  RL         
Sbjct: 229 QF--IAPARELYLTPAFEEIHPDDRERLRRLFAEI---ASTGGSQRAEFRLI---GRNGQ 280

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII- 468
              M  +     +   +      +  +  + +  + ++  E+    +++ +   GI  + 
Sbjct: 281 VFCMESVLTLIRSAEGQAEKVLMVSRDMSERQRAEARVHSEMQFSDTLINSMP-GIFYLY 339

Query: 469 -NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
              +  IL  N+ +  + GY   +I       +  +     ++  + +  +       + 
Sbjct: 340 RGADRKILRWNKNLETVTGYRAAEIETLDALSYFPEEEKPFVHERMLKCFAEGSA---DI 396

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
                 K  +     +   ++             DI+     +  L        ++++  
Sbjct: 397 EVNLLAKNGRRTPFYVTGFRIDIDGRPCMLGIGIDITARLAAEGALRATMFRLTRQNAVL 456

Query: 586 SDFLARV 592
            +     
Sbjct: 457 GEKARNA 463



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/177 (12%), Positives = 60/177 (33%), Gaps = 7/177 (3%)

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
                     I    +  R +  +  I    L ++L +  DG+   +  G +   N    
Sbjct: 38  AIMTITTAVVIILSTLRRRRDWARTHIREQWLATMLRSIGDGVVATDAAGRVTFMNNIAQ 97

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVM---NHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
           +L G+   +  +KP     +          ++ +  ++      T  +  L   ++    
Sbjct: 98  ELTGWKEGEAEQKPLVKVFQTLDRKARQPTDNPIDLVVREGRAITSIEPVLLIARDGAEH 157

Query: 540 SLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
            +      +  +           HD+++ +  ++ L  ++++    + H SD +A +
Sbjct: 158 IVVSKATPIRDADGAVTGVVFVFHDVTQRELAESALRASQEMFRLITDHISDLVAVL 214


>gi|86138705|ref|ZP_01057278.1| sensory box histidine kinase/response regulator [Roseobacter sp.
           MED193]
 gi|85824765|gb|EAQ44967.1| sensory box histidine kinase/response regulator [Roseobacter sp.
           MED193]
          Length = 866

 Score =  310 bits (795), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 105/573 (18%), Positives = 208/573 (36%), Gaps = 26/573 (4%)

Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
            L  E    L    ++  +   +          K     +  +       L  +     S
Sbjct: 62  RLGHEVVQRLEGLSTAATDNMQWVLSQAEVDHLKLEVALINVSEPGGVIALRRQFDIYYS 121

Query: 313 AYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                 E      +   P    +     L     + + L        ++    ++  L  
Sbjct: 122 RIDTFIEGPLFADLRSSPAGGKLLR--RLQDRLNALVGLIDVPDGQVLQNRDQIAQELVN 179

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
                       ++ + + T  +    L  I W     +   F+           M + G
Sbjct: 180 NGDDVRELALFGVVIQVEDTE-SKRLNLFAILWRLAVVVLALFVALAITALLLGWMYRRG 238

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
                   R    +      ++ +++ ++ D I + +R+G IL+ N A   +FGY  ED+
Sbjct: 239 --------RRLAEERSQAGSRMEAMISSSLDAILMTDRQGRILAFNGAAEAIFGYKREDV 290

Query: 493 LRKPFTVFLEQNTPS----VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII--IK 546
           + +     +               L +     +            +  ++  + +   I 
Sbjct: 291 IGEQMADLIIPPHLRQAHYAGMDRLLKTSEARVAGRGRVQLQALRESGEIFPVEVSLSIS 350

Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
           +      +   + DIS+      +L  A+  A      K++ L  +SHE+RTPLT I+G 
Sbjct: 351 RSQADMVFVAYLRDISDRIAADEELRRARDDALAGERAKANLLTVMSHEMRTPLTGILGA 410

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
            ++++        N     Y + +  SG L+L  VND+L +S +ESG  +    P  L E
Sbjct: 411 IDLLQETD----PNAEQSRYLDAMSVSGELLLHHVNDVLQLSSLESGIASEAACPFDLRE 466

Query: 667 AVSEAISLVQLYANEKRILIRTS--FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724
            +   +   Q +A     ++  +         +    R+++Q  LN++ NAI FT  G  
Sbjct: 467 VMERLVGSQQAHARSHGNVLTLNYGLDEAASMVAGQPRALQQALLNLIGNAIKFTRDGA- 525

Query: 725 IIISTTHTS-NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
           +++    ++    +   V DTG G+   +L++  + F  + +S +   EGTGLGL + + 
Sbjct: 526 VLVDVQLSATAGHIEFHVSDTGEGIAKKDLKRIFEDFITLDSSYRRGSEGTGLGLAITRR 585

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           +V+A  G     S   +G+L  +  PL   + P
Sbjct: 586 IVEAIGGTITCDSELGEGSLFSLTLPLA-AAQP 617



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/344 (8%), Positives = 84/344 (24%), Gaps = 33/344 (9%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-----NHIGDLLKRQNTW 143
            D  G +   +       G     +IG ++ D+    H+        + +    + +   
Sbjct: 266 TDRQGRILAFNGAAEAIFGYKREDVIGEQMADLIIPPHLRQAHYAGMDRLLKTSEARVAG 325

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
            G+  L  +  +    P++++     S+            +             +R    
Sbjct: 326 RGRVQLQALRESGEIFPVEVSLSISRSQA----DMVFVAYLRDISDRIAADEELRRARDD 381

Query: 204 FSHLHEIKKGHSSVEKEKYDIF---------SQQSPPPHLRMKNKV------SSLTEYYA 248
                  K    +V   +               Q   P+      +        L  ++ 
Sbjct: 382 ALAGERAKANLLTVMSHEMRTPLTGILGAIDLLQETDPNAEQSRYLDAMSVSGELLLHHV 441

Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
           +    L + +  + +        +E    +  +Q    +  G +          L++   
Sbjct: 442 NDVLQLSSLESGIASEAACPFDLREVMERLVGSQQAHARSHGNVL--------TLNYGLD 493

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
            + S    +   L    ++           G +   +        +      +   G++ 
Sbjct: 494 EAASMVAGQPRALQQALLNLIGNAIKFTRDGAVL-VDVQLSATAGHIEFHVSDTGEGIAK 552

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
                   D   +       S+ T +  +     ++        
Sbjct: 553 KDLKRIFEDFITLDSSYRRGSEGTGLGLAITRRIVEAIGGTITC 596


>gi|237726071|ref|ZP_04556552.1| two-component system sensor histidine kinase [Bacteroides sp. D4]
 gi|229435879|gb|EEO45956.1| two-component system sensor histidine kinase [Bacteroides dorei
           5_1_36/D4]
          Length = 807

 Score =  310 bits (795), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 96/519 (18%), Positives = 191/519 (36%), Gaps = 42/519 (8%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
               +     +          P  F +Y   G +   N   + +   +  +D+       
Sbjct: 302 RRSESEARLEKAYLQNIYKNLPAGFELYDKDGFMTDLNEKEMEIFGLRHKEDVIGLNLFD 361

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR------ENSLAMTFIPFEKA 421
             L    L D                I  S      + +         ++++        
Sbjct: 362 NPLLPQGLKDK---------LKAGAPIDMSFNYDFDRLDGYYSTSRTGTISLISKFAPLY 412

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR---EGIILSTN 478
           +     +    I  ++ +T     K++        I      G A  N    +G   + N
Sbjct: 413 DALGNLINILLINIDNTETTNAYSKIQDFEEFFTLIGNYAKVGYAHFNALKCDGY--AVN 470

Query: 479 RAVSKLF---GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
                +    G P+ +I++         +   +M  +  ++L       L +      ++
Sbjct: 471 SWYRNIGEKEGTPLNEIIK--VHSHFHPDDRRMMLRFFDQVLI-REASHLRRDVRILRED 527

Query: 536 EKLLS--LRIIIKKLPFSSCY---SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
                  + ++++               +DI+E K+ + KL  A+  AE+    KS FLA
Sbjct: 528 GTYTWTRVNVMVRDFRPEDGIIDMVCVNYDITELKETERKLIAARDKAEELDRLKSAFLA 587

Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650
            +SHEIRTPL AI+GFS ++              +Y   +  +  L+L +++D+LD+SK+
Sbjct: 588 NMSHEIRTPLNAIVGFSSLLTETE----DMKDRKQYMAIVQENTELLLQLISDILDLSKM 643

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710
           ESG          ++    E I  +++      + +          + AD   + Q+  N
Sbjct: 644 ESGAFEFVKSDTDVNLLCGEIIRSLRMKVPA-GVELVFEKCLPECHVWADKNRLNQVISN 702

Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
            ++NA+ FT SG  I +     ++  +   VRDTG+G+   +++     F ++ +     
Sbjct: 703 FINNALKFTFSGS-ITLGYYRQTDGYLRFYVRDTGMGIPKNKIKTVFDRFVKLNSFVH-- 759

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             GTGLGL + K++V+   G   + S   +G+     +P
Sbjct: 760 --GTGLGLSICKSLVEQMGGTIGVESEEGEGSCFWFTYP 796



 Score = 43.1 bits (100), Expect = 0.19,   Method: Composition-based stats.
 Identities = 24/232 (10%), Positives = 62/232 (26%), Gaps = 61/232 (26%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           K++    +L  ++     G   ++ +  +   +  V+ L G     I  K F   + +N 
Sbjct: 3   KIQENDARLQQLVSMARIGWWEVDFDEGVYYCSEFVADLLGIEGNKISAKDFANLICENY 62

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
              +                           +++ +   +  +            + E +
Sbjct: 63  RERILEEFRSF--------------------RMMEIYEQVFPIHSKYGMMWVSTKVGEKR 102

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
             K                                  ++G  + I  QR          +
Sbjct: 103 ITKEGHVR-----------------------------VMGMLQCISRQRMN-----MQEQ 128

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
             + ++   + +  I   LLD   + S  + L      +++ + E +   Q 
Sbjct: 129 TVDRLNSLLSRLNGISKSLLDF--LHSDDITLV-----INKILKEVLRQFQA 173


>gi|159905754|ref|YP_001549416.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus maripaludis C6]
 gi|159887247|gb|ABX02184.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus maripaludis C6]
          Length = 639

 Score =  310 bits (795), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 78/248 (31%), Positives = 132/248 (53%), Gaps = 4/248 (1%)

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            K+   +L  +    ++  + KS+ +A VSHE+RTPLT+I G+ E++ +   G + N   
Sbjct: 392 LKKHAEELKASYNELKELDNLKSELIAIVSHELRTPLTSIKGYVELVLDGTMGAI-NDSQ 450

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            +     D +   +  ++  +LD+SKIE G++ ++ E V+L   V + I  +Q  A EK 
Sbjct: 451 KKCLQVADDNIVRLRRLIESMLDLSKIERGELEMYREKVNLKGIVCDVIEYLQPIATEKN 510

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
           I ++         I AD   + Q+  N++ NAI F+P+   I+IS        V LRV D
Sbjct: 511 IKLKKEIEE--IAIDADKDRITQVLTNLIENAIKFSPANESIMISADLEDE-HVHLRVTD 567

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
            G G+   ++EK    F Q+ +S + +  G+GLGL + K++V+A+ G  ++ S   KG+ 
Sbjct: 568 HGAGIPKKDMEKVFNRFYQVDSSTKRKKGGSGLGLAVCKSIVEAHKGSIWVESELGKGST 627

Query: 804 IEIIFPLY 811
             II PL 
Sbjct: 628 FHIILPLS 635


>gi|294777585|ref|ZP_06743036.1| PAS domain S-box [Bacteroides vulgatus PC510]
 gi|294448653|gb|EFG17202.1| PAS domain S-box [Bacteroides vulgatus PC510]
          Length = 807

 Score =  310 bits (795), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 98/517 (18%), Positives = 193/517 (37%), Gaps = 38/517 (7%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
               +     +          P    +Y   G +   N   + +   +  +D+       
Sbjct: 302 RRSESEARLEKAYLQNIYKNLPAGIELYDKDGFMTDLNDKEMEIFGLRHKEDVIGLNLFD 361

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR------ENSLAMTFIPFEKA 421
             L    L D                I  S      + +         ++++        
Sbjct: 362 NPLLPQGLKDK---------LKAGAPIDMSFNYDFDRLDGYYSTSRTGTISLISKFAPLY 412

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR---EGI-ILST 477
           +     +    I  ++ +T     K++        I      G A  N    +G  + S 
Sbjct: 413 DALGNLINILLINIDNTETTNAYSKIQDFEEFFTLIGNYAKVGYAHFNALKCDGYAVNSW 472

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
            R V +  G P+ +I++         +   +M  +  ++L       L +      ++  
Sbjct: 473 YRNVGEKEGTPLNEIIK--VHSHFHPDDRRMMLRFFDQVLI-REASHLRRDVRILREDGT 529

Query: 538 LLS--LRIIIKKLPFSSCY---SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
                + ++++               +DI+E K+ + KL  A+  AE+    KS FLA +
Sbjct: 530 YTWTRVNVMVRDFRPEDGIIDMVCVNYDITELKETERKLIAARDKAEELDRLKSAFLANM 589

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHEIRTPL AI+GFS ++              +Y   +  +  L+L +++D+LD+SK+ES
Sbjct: 590 SHEIRTPLNAIVGFSSLLTETE----DMKDRKQYMAIVQENTELLLQLISDILDLSKMES 645

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712
           G          ++   SE I  +++      + +          + AD   + Q+  N +
Sbjct: 646 GAFEFVKSDTDVNLLCSEIIRSLRMKVPA-GVELVFEECLPGCHVWADKNRLNQVISNFI 704

Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           +NA+ FT SG  I +     ++  +   VRDTG+G+   +++     F ++ +       
Sbjct: 705 NNALKFTFSGS-ITLGYYRQTDGYLRFYVRDTGMGIPKNKIKTVFDRFVKLNSFVH---- 759

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GTGLGL + K++V+   G   + S   +G+     +P
Sbjct: 760 GTGLGLSICKSLVEQMGGTIGVESEEGEGSCFWFTYP 796



 Score = 43.1 bits (100), Expect = 0.19,   Method: Composition-based stats.
 Identities = 24/232 (10%), Positives = 62/232 (26%), Gaps = 61/232 (26%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           K++    +L  ++     G   ++ +  +   +  V+ L G     I  K F   + +N 
Sbjct: 3   KIQENDARLQQLVSMARIGWWEVDFDEGVYYCSEFVADLLGIEGNKISAKDFANLICENY 62

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
              +                           +++ +   +  +            + E +
Sbjct: 63  RERILEEFRSF--------------------RMMEIYEQVFPIHSKYGMMWVSTKVGEKR 102

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
             K                                  ++G  + I  QR          +
Sbjct: 103 ITKEGHVR-----------------------------VMGMLQCISRQRMN-----MQEQ 128

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
             + ++   + +  I   LLD   + S  + L      +++ + E +   Q 
Sbjct: 129 TVDRLNSLLSRLNGISKSLLDF--LHSDDITLV-----INKILKEVLRQFQA 173



 Score = 41.9 bits (97), Expect = 0.47,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 28/56 (50%)

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
           ++ R ++ +  +E   L +I +    GI + +++G +   N    ++FG   ++ +
Sbjct: 299 MELRRSESEARLEKAYLQNIYKNLPAGIELYDKDGFMTDLNDKEMEIFGLRHKEDV 354


>gi|254881166|ref|ZP_05253876.1| two-component system sensor histidine kinase [Bacteroides sp.
           4_3_47FAA]
 gi|254833959|gb|EET14268.1| two-component system sensor histidine kinase [Bacteroides sp.
           4_3_47FAA]
          Length = 809

 Score =  310 bits (795), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 98/517 (18%), Positives = 193/517 (37%), Gaps = 38/517 (7%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
               +     +          P    +Y   G +   N   + +   +  +D+       
Sbjct: 304 RRSESEARLEKAYLQNIYKNLPAGIELYDKDGFMTDLNDKEMEIFGLRHKEDVIGLNLFD 363

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR------ENSLAMTFIPFEKA 421
             L    L D                I  S      + +         ++++        
Sbjct: 364 NPLLPQGLKDK---------LKAGAPIDMSFNYDFDRLDGYYSTSRTGTISLISKFAPLY 414

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR---EGI-ILST 477
           +     +    I  ++ +T     K++        I      G A  N    +G  + S 
Sbjct: 415 DALGNLINILLINIDNTETTNAYSKIQDFEEFFTLIGNYAKVGYAHFNALKCDGYAVNSW 474

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
            R V +  G P+ +I++         +   +M  +  ++L       L +      ++  
Sbjct: 475 YRNVGEKEGTPLNEIIK--VHSHFHPDDRRMMLRFFDQVLI-REASHLRRDVRILREDGT 531

Query: 538 LLS--LRIIIKKLPFSSCY---SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
                + ++++               +DI+E K+ + KL  A+  AE+    KS FLA +
Sbjct: 532 YTWTRVNVMVRDFRPEDGIIDMVCVNYDITELKETERKLIAARDKAEELDRLKSAFLANM 591

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHEIRTPL AI+GFS ++              +Y   +  +  L+L +++D+LD+SK+ES
Sbjct: 592 SHEIRTPLNAIVGFSSLLTETE----DMKDRKQYMAIVQENTELLLQLISDILDLSKMES 647

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712
           G          ++   SE I  +++      + +          + AD   + Q+  N +
Sbjct: 648 GAFEFVKSDTDVNLLCSEIIRSLRMKVPA-GVELVFEECLPGCHVWADKNRLNQVISNFI 706

Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           +NA+ FT SG  I +     ++  +   VRDTG+G+   +++     F ++ +       
Sbjct: 707 NNALKFTFSGS-ITLGYYRQTDGYLRFYVRDTGMGIPKNKIKTVFDRFVKLNSFVH---- 761

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GTGLGL + K++V+   G   + S   +G+     +P
Sbjct: 762 GTGLGLSICKSLVEQMGGTIGVESEEGEGSCFWFTYP 798



 Score = 43.1 bits (100), Expect = 0.19,   Method: Composition-based stats.
 Identities = 24/232 (10%), Positives = 62/232 (26%), Gaps = 61/232 (26%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           K++    +L  ++     G   ++ +  +   +  V+ L G     I  K F   + +N 
Sbjct: 5   KIQENDARLQQLVSMARIGWWEVDFDEGVYYCSEFVADLLGIEGNKISAKDFANLICENY 64

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
              +                           +++ +   +  +            + E +
Sbjct: 65  RERILEEFRSF--------------------RMMEIYEQVFPIHSKYGMMWVSTKVGEKR 104

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
             K                                  ++G  + I  QR          +
Sbjct: 105 ITKEGHVR-----------------------------VMGMLQCISRQRMN-----MQEQ 130

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
             + ++   + +  I   LLD   + S  + L      +++ + E +   Q 
Sbjct: 131 TVDRLNSLLSRLNGISKSLLDF--LHSDDITLV-----INKILKEVLRQFQA 175



 Score = 41.9 bits (97), Expect = 0.47,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 28/56 (50%)

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
           ++ R ++ +  +E   L +I +    GI + +++G +   N    ++FG   ++ +
Sbjct: 301 MELRRSESEARLEKAYLQNIYKNLPAGIELYDKDGFMTDLNDKEMEIFGLRHKEDV 356


>gi|219848904|ref|YP_002463337.1| multi-sensor hybrid histidine kinase [Chloroflexus aggregans DSM
           9485]
 gi|219543163|gb|ACL24901.1| multi-sensor hybrid histidine kinase [Chloroflexus aggregans DSM
           9485]
          Length = 801

 Score =  310 bits (795), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 97/642 (15%), Positives = 209/642 (32%), Gaps = 50/642 (7%)

Query: 197 GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP--PPHLRMKNKVSSLTEYYAHKDDVL 254
             RL  +   L  +      +    +     Q     P + M    S +    A +    
Sbjct: 39  LDRLRARQPDLILLDLQLPDMNGLDFLRILTQEGIDVPVILMTAHGSEMIAVEAFRLGAR 98

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
                P   +E       E        +  +++    L    +   E             
Sbjct: 99  NYLIKPFSDAEAR-----EVIDQALRERRLQRERDRLLSLLQQRVQELTVLTRVGKSVTT 153

Query: 315 FDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
             +   L    V+      +V           +                     L     
Sbjct: 154 LMDQRQLLDRIVEA---AVYVTQAEEGILFERAAQEDRLLLRAWRNLAVQPPDNLHLNTA 210

Query: 375 LSDNNAIKPVMLY---RSDRTCIA------ASARLHTIQWNRENSLAMTF--IPFEKANQ 423
           L+         L          I         A L       +  + +            
Sbjct: 211 LAGQVVRSGKALRLSSAVTGEPITIMPSVTVQATLQVPLQLGDRVIGVLAVNNRRTGRVF 270

Query: 424 FPENMPQNGIEPEDVDTRINKRKM----EIEVMQLCSILEATSDGIAIINREGIILSTNR 479
              +        +     I   ++         +  +I    SD I +++ +  I+S+N+
Sbjct: 271 SESDQSLLSALADYAAIAIENARLYQAVRSSEARYRTIFANASDMILMLDTDWRIVSSNQ 330

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
           + +++    +++++ +P   +        +   L  + +   +Q+L           +  
Sbjct: 331 SGAQILNVTLDELIGQPLQRWCLPEEWPTIAQTLQRVAAG--QQSLPFTVSFQRPSNEFA 388

Query: 540 SLRIIIKKLPFSSCYSL--TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
            + +  ++L       +     D++E ++ + +L  + K+     S     +A V+HE+ 
Sbjct: 389 IVEMSAQRLEVDDQVMIACIGRDLTERRRLEQQLIQSDKL-----SALGQLVAGVAHELN 443

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
            PLT++ G+++++  +R     +         I +  +    IV +LL  ++    +   
Sbjct: 444 NPLTSVSGYAQLLLRKR---ALDEDTRSDLEQIHQQADRAGRIVRNLLMFAR----EHKP 496

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
               V +++ V  A++L         I ++      +P+ +AD   ++Q+ LN+++NA  
Sbjct: 497 ERSVVQINDVVQRALALQVYQLRVDNITVQLELDPQLPKTVADPHQLQQVLLNLITNARQ 556

Query: 718 FTPS--GGQIIISTTH---TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
                 GG + I T     T    + + V DTG+G+    L+K   PF          G+
Sbjct: 557 AMTERGGGTLTIRTALCDTTDGPHIEIVVADTGIGIPAQYLDKIFNPFFTTKP----VGQ 612

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           GTGLGL +   ++  + G+ +  S    GT I I  PL +T 
Sbjct: 613 GTGLGLAICYGIIKEHQGQIWAESREGVGTRIFIRLPLIETH 654


>gi|83311067|ref|YP_421331.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82945908|dbj|BAE50772.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 535

 Score =  310 bits (795), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 119/533 (22%), Positives = 212/533 (39%), Gaps = 44/533 (8%)

Query: 314 YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
               G       VD  P    +     L      +       +++ ++    ++ +L   
Sbjct: 3   ASRTGPKENVLVVDDEPQ-ILIAITDLLEDEFQVWTANDGPSALELLKE-HEMAVILSDQ 60

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP-ENMPQNG 432
           ++   +  + +   R      A    +           A+           P   +    
Sbjct: 61  RMPGMSGAEFLGQARVL--SDATRVLVTGYSDLDALVSAVNLGQIHAYLSKPWNPLELRV 118

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-PVED 491
           +     D     R ++ E   + +++    D + I + +      N+  ++L G     D
Sbjct: 119 VVRTAADRWRLDRTLQQERTLMLALMNNIPDAVFIKDLQLKFSRVNQPQARLTGLADPSD 178

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
           ++ +  +  LE +    +      IL   + Q     ++   ++   L   +    +   
Sbjct: 179 LVGQRLSELLESDHARTVEAEERAILDQGVGQLDRLESVT-DQDGNALWYSVTKVPIRQG 237

Query: 552 S---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD--------------------- 587
                 +    D++  KQ ++ L  A    ++    ++                      
Sbjct: 238 DEVVGLAGIARDVTARKQAEDYLRRAHDELQQAVEERTRWLQKEISRRAQAEEQAQAARE 297

Query: 588 -----------FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
                      FLA +SHE+RTPL AIIGFSE + N   G     RY  + + I  S + 
Sbjct: 298 AAEAASRAKTIFLANMSHELRTPLNAIIGFSE-LANSIMGKADMDRYGGFLDNISESAHH 356

Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696
           +L +++D+LD+S++E GK+ L    V + EAV  A+ LV    + KR  +  S  + +P 
Sbjct: 357 LLRVISDILDVSRVEVGKVILRESVVDVAEAVRAAMRLVSHVVSNKRQSLTFSPQDGLPL 416

Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKA 756
           I AD R +KQI LN+LSNA  FTP  G I ++        V + V D GVG+   ++   
Sbjct: 417 IRADERLMKQIVLNLLSNAAKFTPESGNIRVAANLVD-GCVTVEVEDDGVGIAAEDIAMV 475

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           ++PFGQ  N+   + EGTGLGLPLAK  ++ + G   + S   +GT + + FP
Sbjct: 476 LQPFGQAENAISPKHEGTGLGLPLAKGFMELHGGSLTLESRVGEGTKVMLTFP 528



 Score = 57.7 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 26/175 (14%), Positives = 50/175 (28%), Gaps = 7/175 (4%)

Query: 286 KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYA 344
             Y     N  +      +  +   L     +   L    ++  P   F+          
Sbjct: 104 HAYLSKPWNPLELRVVVRTAADRWRLDRTLQQERTLMLALMNNIPDAVFIKDLQLKFSRV 163

Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
           N     LT      D+     LS LL++       A +  +L +          RL ++ 
Sbjct: 164 NQPQARLTGLADPSDLVG-QRLSELLESDHARTVEAEERAILDQGVGQLD----RLESVT 218

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459
               N+L  +        Q  E +   GI  +    +  +  +     +L   +E
Sbjct: 219 DQDGNALWYSVTKVPIR-QGDEVVGLAGIARDVTARKQAEDYLRRAHDELQQAVE 272



 Score = 46.2 bits (108), Expect = 0.024,   Method: Composition-based stats.
 Identities = 15/125 (12%), Positives = 33/125 (26%), Gaps = 4/125 (3%)

Query: 90  DAHGYLKEISEELPKTIGN-YAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           D       +++   +  G      ++G RL ++ +  H          +  Q        
Sbjct: 155 DLQLKFSRVNQPQARLTGLADPSDLVGQRLSELLESDHARTVEAEERAILDQGVGQLDRL 214

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +     +   +  +PI   + E  G  G  I              +R   +     
Sbjct: 215 ESVTDQDGNALWYSVTKVPIRQGD-EVVGLAG--IARDVTARKQAEDYLRRAHDELQQAV 271

Query: 209 EIKKG 213
           E +  
Sbjct: 272 EERTR 276


>gi|319640176|ref|ZP_07994902.1| sensor protein [Bacteroides sp. 3_1_40A]
 gi|317388163|gb|EFV69016.1| sensor protein [Bacteroides sp. 3_1_40A]
          Length = 820

 Score =  310 bits (795), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 98/517 (18%), Positives = 193/517 (37%), Gaps = 38/517 (7%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
               +     +          P    +Y   G +   N   + +   +  +D+       
Sbjct: 315 RRSESEARLEKAYLQNIYKNLPAGIELYDKDGFMTDLNDKEMEIFGLRHKEDVIGLNLFD 374

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR------ENSLAMTFIPFEKA 421
             L    L D                I  S      + +         ++++        
Sbjct: 375 NPLLPQGLKDK---------LKAGAPIDMSFNYDFDRLDGYYSTSRTGTISLISKFAPLY 425

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR---EGI-ILST 477
           +     +    I  ++ +T     K++        I      G A  N    +G  + S 
Sbjct: 426 DALGNLINILLINIDNTETTNAYSKIQDFEEFFTLIGNYAKVGYAHFNALKCDGYAVNSW 485

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
            R V +  G P+ +I++         +   +M  +  ++L       L +      ++  
Sbjct: 486 YRNVGEKEGTPLNEIIK--VHSHFHPDDRRMMLRFFDQVLI-REASHLRRDVRILREDGT 542

Query: 538 LLS--LRIIIKKLPFSSCY---SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
                + ++++               +DI+E K+ + KL  A+  AE+    KS FLA +
Sbjct: 543 YTWTRVNVMVRDFRPEDGIIDMVCVNYDITELKETERKLIAARDKAEELDRLKSAFLANM 602

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHEIRTPL AI+GFS ++              +Y   +  +  L+L +++D+LD+SK+ES
Sbjct: 603 SHEIRTPLNAIVGFSSLLTETE----DMKDRKQYMAIVQENTELLLQLISDILDLSKMES 658

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712
           G          ++   SE I  +++      + +          + AD   + Q+  N +
Sbjct: 659 GAFEFVKSDTDVNLLCSEIIRSLRMKVPA-GVELVFEECLPGCHVWADKNRLNQVISNFI 717

Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           +NA+ FT SG  I +     ++  +   VRDTG+G+   +++     F ++ +       
Sbjct: 718 NNALKFTFSGS-ITLGYYRQTDGYLRFYVRDTGMGIPKNKIKTVFDRFVKLNSFVH---- 772

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GTGLGL + K++V+   G   + S   +G+     +P
Sbjct: 773 GTGLGLSICKSLVEQMGGTIGVESEEGEGSCFWFTYP 809



 Score = 43.1 bits (100), Expect = 0.19,   Method: Composition-based stats.
 Identities = 24/232 (10%), Positives = 62/232 (26%), Gaps = 61/232 (26%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           K++    +L  ++     G   ++ +  +   +  V+ L G     I  K F   + +N 
Sbjct: 16  KIQENDARLQQLVSMARIGWWEVDFDEGVYYCSEFVADLLGIEGNKISAKDFANLICENY 75

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
              +                           +++ +   +  +            + E +
Sbjct: 76  RERILEEFRSF--------------------RMMEIYEQVFPIHSKYGMMWVSTKVGEKR 115

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
             K                                  ++G  + I  QR          +
Sbjct: 116 ITKEGHVR-----------------------------VMGMLQCISRQRMN-----MQEQ 141

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
             + ++   + +  I   LLD   + S  + L      +++ + E +   Q 
Sbjct: 142 TVDRLNSLLSRLNGISKSLLDF--LHSDDITLV-----INKILKEVLRQFQA 186



 Score = 41.9 bits (97), Expect = 0.47,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 28/56 (50%)

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
           ++ R ++ +  +E   L +I +    GI + +++G +   N    ++FG   ++ +
Sbjct: 312 MELRRSESEARLEKAYLQNIYKNLPAGIELYDKDGFMTDLNDKEMEIFGLRHKEDV 367


>gi|228475575|ref|ZP_04060293.1| sensor protein YycG [Staphylococcus hominis SK119]
 gi|228270357|gb|EEK11792.1| sensor protein YycG [Staphylococcus hominis SK119]
          Length = 608

 Score =  310 bits (795), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 79/388 (20%), Positives = 171/388 (44%), Gaps = 29/388 (7%)

Query: 426 ENMPQNGIEPEDVDTRINKRKM--EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           + + +  +   ++  R+ + +   E E  +L S++   SDGI   +R G I   N    K
Sbjct: 234 DEIGELALAFNNLSKRVQEAQANTESEKRRLDSVITHMSDGIIATDRRGRIRIVNDMAIK 293

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           + G   ED++       L+      +        S+ +    E+  +        ++   
Sbjct: 294 MLGMAKEDLIGYYMLNVLKIEGDFSLEEIQENNDSILIDMNEEEGIIAR------VNFST 347

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
           I++   F + Y   +HD++E +Q + +              + +F+A VSHE+RTPLT++
Sbjct: 348 IVQDTGFVNGYIAVLHDVTEQQQVERE--------------RREFVANVSHELRTPLTSM 393

Query: 604 IGFSEVIKNQRFGPLGNPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
             + E ++    G   +      + +        ++ +VNDLL +SK+++    +  E V
Sbjct: 394 NSYIEALEE---GAWKDENLAPSFLSVTREETVRMIRLVNDLLQLSKMDNETEQITKEIV 450

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
             +  +++ I+  +     K         N       D   + Q+  N+++NA+ ++   
Sbjct: 451 DFNMFINKIIN--RHEMAAKDTTFVREIPNETIFTEIDPDKMTQVFDNVITNAMKYSRGD 508

Query: 723 GQIIISTTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
            ++       +    + +R++D G+G+   +++K    F ++  ++  +  GTGLGL ++
Sbjct: 509 KRVEFHVKQNALYNRMTIRIKDNGIGIPINKVDKIFDRFYRVDKARTRKMGGTGLGLAIS 568

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           K +V+A+ G+ +  S   +GT I I  P
Sbjct: 569 KEIVEAHNGRIWANSVEGQGTSIFITLP 596


>gi|126664138|ref|ZP_01735131.1| hybrid sensory kinase [Flavobacteria bacterium BAL38]
 gi|126623852|gb|EAZ94547.1| hybrid sensory kinase [Flavobacteria bacterium BAL38]
          Length = 1177

 Score =  310 bits (795), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 107/759 (14%), Positives = 250/759 (32%), Gaps = 57/759 (7%)

Query: 95   LKEISEELPKTIGNYAFKMIGMR----LCDVSDILHID---PNNHIGDLLKRQNTWYGKT 147
              E ++   + +G    +M+G         V  +   +     + +   +++        
Sbjct: 433  FLEYNKSACEMLGLTEDQMLGKSSFDPHWKVVHLDGTEFKAEEHPVPQAIRKLIPINNIL 492

Query: 148  TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                   +N  V + + A+P++    E          +               +++F ++
Sbjct: 493  MGVHRPISNDLVWLLVDAIPVFGDTGELVYV--ICTFNDITARKKAEDALIESNERFKYV 550

Query: 208  HEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLT--EYYAHKDD--VLKTEKYP 260
             E             +              + KN +      E   H DD    ++    
Sbjct: 551  SEATSDALWDWNIITNEIFVGESYSLLFGYQFKNNIIPGEFCENLVHPDDKFEYESSIEN 610

Query: 261  LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA----YFD 316
                E+     +  +   +              +        +      +          
Sbjct: 611  AFADEKQKWSYEYRYLKADGTYAVVSDKAIIKYDTLGNPIRMIGAMQDITQEKLLKHELQ 670

Query: 317  EGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
            + E       +        V  +GN    N     +  Y   ++ +              
Sbjct: 671  QSEERFKGAFNNSSFGSALVNINGNWIVVNKRMTEILGYT-KEEFKKLTFQEFTFHEDLK 729

Query: 376  SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
             D    K +     D    +       I  + ++ + +        N   +         
Sbjct: 730  IDLAYKKQLD----DGIISSFQFEKRFIHKD-QSLVWVHLSVSTVKNSQGKVQHYVAQVV 784

Query: 436  EDVDTRINKRK---MEIEVMQ------------LCSILEATSDGIAIINREGIILSTNRA 480
            +  + +  + +   +  E  +               + + T D + + N +      + +
Sbjct: 785  DISERKRMEEENRILIEENNRNKAQQLIDAKNWYRLLADNTIDLVCLHNLDTTFKYISPS 844

Query: 481  VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
            V  L GY  ED++ K    F+         + +  I+  D R  + +         +   
Sbjct: 845  VKVLLGYSPEDLIGKFPQDFIHPEDLDKFKNQIGNIIQEDKR--ISEQVRLKNSNGQYFW 902

Query: 541  LRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
                   +  ++    +  +  DI++ K  +  + +      + +  +++ ++ +SHE R
Sbjct: 903  FETNATLVFENNLPVSFQSSSRDITQRKNAEQIIENTLIQERQLNELRTNLVSTISHEFR 962

Query: 598  TPLTAIIGFSEVIKNQRFGP---LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
            TP+T I   +E + +   G       P   +  + I +  + ++++++ +L ISK ++ K
Sbjct: 963  TPMTTIRTSAE-LISMYLGNNEFANAPLVEKRIDTITKEIDRIVELMDAVLTISKDDADK 1021

Query: 655  MNLHFEPVSLDEAVSEAISL-VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713
             + +    +L E   + I         ++++ I+  F +++  I AD+  +K    N+LS
Sbjct: 1022 TSYNPVVCNLKEICLDVIETSFSHQKGDRKVEIK--FDDSLVEIFADINLIKYTLFNVLS 1079

Query: 714  NAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
            NA  ++   G + ++   T+  EV + + D G+G+   +  K    F +  NS     +G
Sbjct: 1080 NAFKYSVGFGNVKLNL-FTNQNEVFVEIIDNGIGIPEEDQPKLFNTFYRASNSNG--IQG 1136

Query: 774  TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
            TGLGL + K   + N G   + S   KGT + + FPL D
Sbjct: 1137 TGLGLYIIKTFTEKNSGNVKLESQLGKGTKVTLQFPLND 1175



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 51/521 (9%), Positives = 138/521 (26%), Gaps = 37/521 (7%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK-RQNTWYG 145
           + ++  G +  ISE      G    +++G    +      ++        L+  Q +   
Sbjct: 170 YELNQSGEILYISESWESGTGYTISEVLGKNTAEHIHPDDVEKVAFFLSKLELNQKSEES 229

Query: 146 KTTLW-PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            T       G  ++   D+  +    R+ +       G         + +       + +
Sbjct: 230 ITYRIQHKNGHYIWHSSDVKLV---ERDGKL---FYIGNCRDVTDFIEAQEEISNQKEFY 283

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS------SLTEYYAHKDDVLKTEK 258
             + +       V  E +                            ++    D   K+ +
Sbjct: 284 GKILDRLPIDLGVWDENHRYMFLNREAIKNDELRNFIIGKDDFDYAKHTGRDDAFAKSRR 343

Query: 259 YPLLTS--EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
              L +   +  +  ++     N  +    + F  + N   +      +    + S   +
Sbjct: 344 EKFLRALKTKEIVEWEDTIIAQNGVKVFYTRKFVPIYNEEGKFDLMTGYGIDITESKKIN 403

Query: 317 EGENLTPET----VDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
           E    + +     +    +   V          N S   +        +  +        
Sbjct: 404 EEILKSRQLITNVIQNAAVGIIVQGPKSEFLEYNKSACEMLGLTEDQMLGKSSFDPHWKV 463

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN-SLAMTFIPFEKANQFPENMPQ 430
                     +   + ++ R  I  +  L  +     N  + +            E +  
Sbjct: 464 VHLDGTEFKAEEHPVPQAIRKLIPINNILMGVHRPISNDLVWLLVDAIPVFGDTGELVYV 523

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII----LSTNRAVSKLFG 486
                +    +  +  +     +   + EATSD +     +  I    +    + S LFG
Sbjct: 524 ICTFNDITARKKAEDALIESNERFKYVSEATSDALW----DWNIITNEIFVGESYSLLFG 579

Query: 487 YPVED--ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR-- 542
           Y  ++  I  +     +  +        +    + + ++           +     +   
Sbjct: 580 YQFKNNIIPGEFCENLVHPDDKFEYESSIENAFADEKQK-WSYEYRYLKADGTYAVVSDK 638

Query: 543 --IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE 581
             I    L         M DI++ K  K++L  +++  +  
Sbjct: 639 AIIKYDTLGNPIRMIGAMQDITQEKLLKHELQQSEERFKGA 679



 Score = 78.9 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 44/379 (11%), Positives = 109/379 (28%), Gaps = 18/379 (4%)

Query: 226 SQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE--KYPLLTSEESSLPEQEDFHTINLNQY 283
                     +   +   T  + H DDV K       L  +++S           N +  
Sbjct: 183 ESWESGTGYTISEVLGKNTAEHIHPDDVEKVAFFLSKLELNQKSEESITYRIQHKNGHYI 242

Query: 284 TKKQYFGTLQNNSKE--SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GN 340
                   ++ + K           +           +    + +D+ PI   V+     
Sbjct: 243 WHSSDVKLVERDGKLFYIGNCRDVTDFIEAQEEISNQKEFYGKILDRLPIDLGVWDENHR 302

Query: 341 LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400
             + N   +     +  + I             +       +     R+ +T        
Sbjct: 303 YMFLNREAIK--NDELRNFIIGKDDFDYAKHTGRDDAFAKSRREKFLRALKTKEIVEWED 360

Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
             I  N       T       N+  +     G   +  +++    ++      + ++++ 
Sbjct: 361 TIIAQNGVKVFY-TRKFVPIYNEEGKFDLMTGYGIDITESKKINEEILKSRQLITNVIQN 419

Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK----PFTVFLEQNTPSVMNHYLTEI 516
            + GI +   +   L  N++  ++ G   + +L K    P    +  +            
Sbjct: 420 AAVGIIVQGPKSEFLEYNKSACEMLGLTEDQMLGKSSFDPHWKVVHLDGTEFKAEEHPVP 479

Query: 517 LSLDLRQTLEKITLGSTK--EEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNK 570
            ++     +  I +G  +     L+ L +    +   +        T +DI+  K+ ++ 
Sbjct: 480 QAIRKLIPINNILMGVHRPISNDLVWLLVDAIPVFGDTGELVYVICTFNDITARKKAEDA 539

Query: 571 LSHAKKIAEKESSHKSDFL 589
           L  + +  +  S   SD L
Sbjct: 540 LIESNERFKYVSEATSDAL 558



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 7/111 (6%), Positives = 33/111 (29%), Gaps = 6/111 (5%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ--NTWYGKTTL 149
           +G    +++ + + +G    +   +   + +    +  +      L     +++  +   
Sbjct: 693 NGNWIVVNKRMTEILGYTKEEFKKLTFQEFTFHEDLKIDLAYKKQLDDGIISSFQFEKRF 752

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
              + +   V + L+   + +   +   +     V             + L
Sbjct: 753 IHKDQSL--VWVHLSVSTVKNSQGKVQHY--VAQVVDISERKRMEEENRIL 799



 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/127 (13%), Positives = 50/127 (39%), Gaps = 3/127 (2%)

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
            +  S  + + +    +N+ G IL  + +     GY + ++L K     +  +    +  
Sbjct: 156 NKFDSFAKNSKEIFYELNQSGEILYISESWESGTGYTISEVLGKNTAEHIHPDDVEKVAF 215

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKN 569
           +L+++  L+ +           K    +     +K +       Y     D++++ + + 
Sbjct: 216 FLSKL-ELNQKSEESITYRIQHKNGHYIWHSSDVKLVERDGKLFYIGNCRDVTDFIEAQE 274

Query: 570 KLSHAKK 576
           ++S+ K+
Sbjct: 275 EISNQKE 281


>gi|312183673|gb|ADQ42406.1| PAS/PAC sensor signal transduction histidine kinase [Methanosaeta
            harundinacea]
          Length = 1176

 Score =  310 bits (795), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 122/760 (16%), Positives = 240/760 (31%), Gaps = 59/760 (7%)

Query: 68   LDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM-IGMRLCDVSDILH 126
             +SE  F            +  D  G +   ++   +  G     + +G+ +  V     
Sbjct: 452  AESERRFREMADTLPQP-IFECDLAGKVTFANQTAFELYGYDRQDLEVGVNIFQVFAYED 510

Query: 127  IDPNNH-IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVH 185
             +         L     +  + T    EGT  ++ +   + PI  R+    G RG   + 
Sbjct: 511  REEMMKNFQRSLHDDKVFTYEYTGLRKEGTTFHLIVY--SRPI-IRDGRPVGLRG--TIV 565

Query: 186  VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSL 243
                        K+L      L EI      V      IF               +V   
Sbjct: 566  DITERKRVEENIKQLADLSEKLVEIGSPMIFVIDRDRRIFLWNRASEKALGYSAEEVLGD 625

Query: 244  TEYYAHKDDVLKTEKYPLLTSEE-----SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE 298
             E +       +     L T +E     ++   +      +  +         L++    
Sbjct: 626  EEVWTLLFPDGEERSEFLKTLDEIEMGLTAEGRRTRILAKSGEEKVISWSGIKLEDGEGN 685

Query: 299  SFEYLSHRNHPSL----SAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTK 353
                +      +               +   ++   +        G +   N     +T 
Sbjct: 686  GIGIVITAQDTTEYAKMEEEIRSEREFSRGIIEGADLFIVGLDPRGRITLFNRGAEKVTG 745

Query: 354  YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
              + +                ++  +     M   S      A      +       +A+
Sbjct: 746  VSAKEAFGEN------FFMRFVAGADRRGFEMAVSSIFEGKPAEQTEAAVVTRTGEPMAI 799

Query: 414  TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
             +      ++  E         +    R     +E +++     +E+++DGIAI  +   
Sbjct: 800  QWGWSAVRSRTGEIERVIAFGHDISYDRW----LEEQMLLFMDAIESSNDGIAIFGKSNH 855

Query: 474  ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
            +L  N A+  +FG+ +E+   +             +  +  ++ S        +      
Sbjct: 856  LLFANPALLDMFGFRLEEARGR--------LHQDFILDFGEDVSSSGEGNGGRRRVTCVR 907

Query: 534  KEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
            K+       I    +  S        +   DISE       +   ++  E  +     F 
Sbjct: 908  KDGSTFPASISFAPVASSDGKPMATIVVARDISE-------MIEYQQRLETLNRELESFA 960

Query: 590  ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
              +SH++R PL  I GF+  ++   +G        +Y   I      +  ++ DLLD S+
Sbjct: 961  YTISHDLRAPLRGIRGFALALQED-YGDDLEEAGRKYLERIGAIAENMDRLILDLLDYSR 1019

Query: 650  IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709
            I  G++    E V L   V+EA   V+     K   +  S     P I  +    KQ+  
Sbjct: 1020 I--GRIKSPPEMVDLKRLVAEAYEDVKSAGKGKPATL--SLVGEFPTISCERSRAKQVFS 1075

Query: 710  NILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
            N+L N++ ++    +I +  +    +E    V+D G+G      EK   PF ++      
Sbjct: 1076 NLLENSLKYSKDAIEIEVG-SLDRGDEYEFWVKDDGLGFDMKYAEKIFDPFTRLE----R 1130

Query: 770  RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             GEG+G+GL   K +V+   G+ +  S P +G       P
Sbjct: 1131 SGEGSGIGLATVKKIVETCGGRIWAESAPGRGAAFRFTIP 1170



 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 52/505 (10%), Positives = 131/505 (25%), Gaps = 34/505 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWY 144
            + ++  G +  IS  + +  G  A ++ G  +               +   L       
Sbjct: 84  IYVVETTGKIAYISPSVERIFGYPAGEVQGRNVSQFLIPEDSRYLEERLKSALDGIFRVS 143

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            +      +G+  +V       PI        G  G  +              +  +++ 
Sbjct: 144 -ELRFIAKDGSVHHVRTY--GRPIL--EGHLRGIHGIMV--DVTEQKKAEEALRESEERL 196

Query: 205 SHLHEIK------KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
               E        +  S+ E      +++          + ++     +      ++   
Sbjct: 197 KLAVEGADLAIWNRDLSTGEVVGNRRYAEIVGTAPAEESDVLAWKRSIHPEDLPSVERAL 256

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH-------PSL 311
             +          +    +     +   +     ++ S    +                 
Sbjct: 257 REIAAGRTDLFDLEYRTTSAPAEAWVHDRGLVVKRDESGRPIKMAGVMQDVTWQKKTDRA 316

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYS---HGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
                E        V++ P   FV +    G + + + +   L  Y   D    A     
Sbjct: 317 ILEASEKRKELERIVNRSPAIAFVQAVPFGGPVEFVSENVSQL-GYAPEDFYSRAASFDR 375

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
            L  P+  +    +     + +    +       +  + E    +    +   ++     
Sbjct: 376 NLVHPEDLELVVSELG--RQIEEGSRSFFQEFRVLTSSGE-VRWLASNVWISRDEAGAVT 432

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
              GI  +  + +  +  +     +   + +     I   +  G +   N+   +L+GY 
Sbjct: 433 HVEGIALDITERKNMEMALAESERRFREMADTLPQPIFECDLAGKVTFANQTAFELYGYD 492

Query: 489 VEDI-LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI---I 544
            +D+ +               M       L  D          G  KE     L +    
Sbjct: 493 RQDLEVGVNIFQVFAYEDREEMMKNFQRSLHDDK--VFTYEYTGLRKEGTTFHLIVYSRP 550

Query: 545 IKKLPFSSCYSLTMHDISEWKQEKN 569
           I +         T+ DI+E K+ + 
Sbjct: 551 IIRDGRPVGLRGTIVDITERKRVEE 575



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 19/143 (13%), Positives = 47/143 (32%), Gaps = 1/143 (0%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
                 +   + +   ++E     I ++   G I   + +V ++FGYP  ++  +  + F
Sbjct: 60  AKANEALRRSLERYRCLVENVDGVIYVVETTGKIAYISPSVERIFGYPAGEVQGRNVSQF 119

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
           L       +   L   L   + +  E   +        +                  M D
Sbjct: 120 LIPEDSRYLEERLKSAL-DGIFRVSELRFIAKDGSVHHVRTYGRPILEGHLRGIHGIMVD 178

Query: 561 ISEWKQEKNKLSHAKKIAEKESS 583
           ++E K+ +  L  +++  +    
Sbjct: 179 VTEQKKAEEALRESEERLKLAVE 201



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 44/409 (10%), Positives = 111/409 (27%), Gaps = 29/409 (7%)

Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAH 249
                +R  +++  L E   G   V +    I                         +  
Sbjct: 62  ANEALRRSLERYRCLVENVDGVIYVVETTGKIAYISPSVERIFGYPAGEVQGRNVSQFLI 121

Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN--NSKESFEYLSHRN 307
            +D    E+      +      +  F   + + +  + Y   +            +    
Sbjct: 122 PEDSRYLEERLKSALDGIFRVSELRFIAKDGSVHHVRTYGRPILEGHLRGIHGIMVDVTE 181

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFF--VYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365
                    E E      V+   +  +    S G +   N  +  +      ++ ++   
Sbjct: 182 QKKAEEALRESEERLKLAVEGADLAIWNRDLSTGEVV-GNRRYAEIVGTAPAEESDVLAW 240

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
             ++      S   A++ +   R+D   +               +         K ++  
Sbjct: 241 KRSIHPEDLPSVERALREIAAGRTDLFDLEYRTTSAP-----AEAWVHDRGLVVKRDESG 295

Query: 426 ENMPQNGIEPEDVDTRINKR---KMEIEVMQLCSILEATSDGIAIINR---EGIILSTNR 479
             +   G+  +    +   R   +   +  +L  I+  +   IA +      G +   + 
Sbjct: 296 RPIKMAGVMQDVTWQKKTDRAILEASEKRKELERIVNRSP-AIAFVQAVPFGGPVEFVSE 354

Query: 480 AVSKLFGYPVEDILRKPFTV---FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
            VS+L GY  ED   +  +     +      ++   L   +    R   +      T   
Sbjct: 355 NVSQL-GYAPEDFYSRAASFDRNLVHPEDLELVVSELGRQIEEGSRSFFQ-EFRVLTSSG 412

Query: 537 KLLSLRIIIKKLPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKE 581
           ++  L   +      +           DI+E K  +  L+ +++   + 
Sbjct: 413 EVRWLASNVWISRDEAGAVTHVEGIALDITERKNMEMALAESERRFREM 461


>gi|150007414|ref|YP_001302157.1| two-component hybrid sensor kinase/response regulator
           [Parabacteroides distasonis ATCC 8503]
 gi|149935838|gb|ABR42535.1| two-component system sensor histidine kinase, with response
           regulator receiver domain [Parabacteroides distasonis
           ATCC 8503]
          Length = 793

 Score =  310 bits (795), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 107/510 (20%), Positives = 195/510 (38%), Gaps = 38/510 (7%)

Query: 334 FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393
            +  H  L +AN  +  +  Y   +   +      L         N +   +        
Sbjct: 25  LLDEHFTLLWANDFYYDMIGYPKEEYEALFHNKPDLYFKGHDEAWNILSKNVYETIANKA 84

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
                 +       +    +T    ++             + EDV  R  ++ +      
Sbjct: 85  SGYETVIQMPTRKGKRWTKITSTFTDQLQDGIPISYTVMTDVEDVMRRRIEQTI------ 138

Query: 454 LCSILEATSDGI----AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
                +     I       +    +L  N       G      L       L++ + + M
Sbjct: 139 ---TYDNIPGFISKHKVHKDGSFTLLEANDKYMDFSGIDKNSFLSFSPFSRLDETSRNTM 195

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII---IKKLPFSSCYSLT---MHDISE 563
           N ++  +L     + +  +     K      L++    I        Y +    + DI+E
Sbjct: 196 NAHIPCMLKG---EPVHFVIQSKDKNGNGAWLQLNGECIGWEGDEPIYLIVYINITDITE 252

Query: 564 WKQEKNKLSHAKKI-------AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            ++ + KL    K        AE+ +  KSDFLAR+SH+IRTP+ AI+G + + K     
Sbjct: 253 QRELQKKLEKQSKQLKEALKSAEQANQAKSDFLARMSHDIRTPMNAIMGMATIAKAHVD- 311

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
                R ++    I+ +  L+L ++N++LD+SKIESG++ L  +  ++ E + + + ++Q
Sbjct: 312 --ERERILDCMEKINGASKLLLSLINEVLDMSKIESGRLILSEDEFNVGELLQDLVVMMQ 369

Query: 677 LYANEKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN- 734
                K+  +     N     +  D + +KQ+ +NILSNAI +TP  G+I I        
Sbjct: 370 PEIKNKQQTLNIHVKNLRHENVKGDTQRIKQVLMNILSNAIKYTPENGRITIEIYEKDPH 429

Query: 735 ---EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
                      D G GM    L+K  +PF +  + +  R +GTGLG+ ++  ++    G 
Sbjct: 430 NGIGNYQFVFEDNGRGMKPEFLDKIFEPFERASDDEIKRIQGTGLGMSISHKIIQMMGGD 489

Query: 792 FYIFSTPAKGTLIEIIFPLY-DTSHPHDCI 820
             + S   KG+   I  PL      P D I
Sbjct: 490 IKVESEYGKGSRFTIDMPLVCRDQKPDDKI 519


>gi|229916169|ref|YP_002884815.1| histidine kinase [Exiguobacterium sp. AT1b]
 gi|229467598|gb|ACQ69370.1| histidine kinase [Exiguobacterium sp. AT1b]
          Length = 569

 Score =  310 bits (795), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 109/483 (22%), Positives = 197/483 (40%), Gaps = 66/483 (13%)

Query: 339 GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398
             +  AN     +  +     I +    +  L     +   A++  +    +        
Sbjct: 151 DAISSANAGARTIILWTVASAIIVTTVFAFFLSTRITAPLRAMRDAVNKTGEGQ---FDL 207

Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458
           RL T   +    LA +F           N                   ++ E +QL SIL
Sbjct: 208 RLETKTRDEIGELAASFNAMSSQLSKYVN------------------ALDRERLQLASIL 249

Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
            + +DG+  ++R   ++ TN   S L                 +     V+     E++ 
Sbjct: 250 RSMADGVITLDRHANVIVTNPQASPLLQ---------------DGQPHEVVLSLYEEVME 294

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISEWKQEKNKLSHAKKI 577
               +T+E       ++E+  +L +             + + D SE              
Sbjct: 295 GTSEKTIEV-----KQDERYYTLTVTPLVGEDDFEGAVVVIRDTSE-------------- 335

Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
           + +    ++DF+A +SHE+RTPL  + G+SE I +       +    E+A+ I      +
Sbjct: 336 SHRLDKMRTDFVANISHELRTPLVTLQGYSEAIIDGI--TESDEATKEFASIIYDESLRL 393

Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697
             +VNDLLD+++IESGK  +HF    + + +   +      A+EK I ++T   + +  I
Sbjct: 394 ARLVNDLLDLARIESGKETMHFTSFDIGDFLPRVMRKFNQMASEKEIRLQTDAPHRL--I 451

Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757
            AD   ++Q+  N++ NAI  T SG +I I  T  ++  + +++ DTG G+   +L    
Sbjct: 452 EADGDRLEQVFTNLIGNAIAHTDSG-EIRIEATEETDG-LRIQLTDTGHGIPKEDLPFVF 509

Query: 758 KPFGQIPNSQQIRGE-GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           + F +   ++    + GTG+GL + K +VDA+ GK  + ST   GT  EI  P      P
Sbjct: 510 ERFYKADKARTSGSKTGTGIGLAIVKNVVDAHHGKVSVSSTLGVGTTFEIYLPF---EQP 566

Query: 817 HDC 819
           H+ 
Sbjct: 567 HNS 569


>gi|167647731|ref|YP_001685394.1| multi-sensor hybrid histidine kinase [Caulobacter sp. K31]
 gi|167350161|gb|ABZ72896.1| multi-sensor hybrid histidine kinase [Caulobacter sp. K31]
          Length = 710

 Score =  310 bits (795), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 96/366 (26%), Positives = 160/366 (43%), Gaps = 14/366 (3%)

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
           L +  + + D + I + EG  + ++RA     GYP+E +        +  +  +    Y+
Sbjct: 194 LTTFFDVSLDMLVIRDMEGRFVKSSRAWETALGYPLEALEGASLLSLVHPDDVAATQDYM 253

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH 573
                 D  +    +      +     L    ++            D++E  +E  ++  
Sbjct: 254 RHA--GDCGEVFGFVNRYRHSDGHYRQLEWRARR--SGDLVFGVARDVTERLREAAEMEA 309

Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
           AK  AE  +  KSDFLA +SHEIRTPL  +IG    +      P       E  + I  S
Sbjct: 310 AKTAAEAANRAKSDFLANMSHEIRTPLNGVIGVVAALGQTGLTPA----QREMVDLIQSS 365

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693
           G  +  +V+D+LD+SKIE+G + +      L+  +   + + +L A EK +  R     +
Sbjct: 366 GETLERLVSDILDVSKIEAGHLAIEEREFDLEAELGGLLDIARLRAEEKGLTFRVEGGAS 425

Query: 694 IPRI-LADLRSVKQIALNILSNAIHFTPSGGQI-IISTTHTSNEE----VILRVRDTGVG 747
              + L D   ++Q+  N+LSNA+ FT  G  +  I        E    + L V+DTGVG
Sbjct: 426 ARGVFLGDSIRIRQVLGNLLSNAMKFTGQGEIVARIEVADPPAGEQASRLTLEVQDTGVG 485

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
                     + F Q   +   R  GTGLGL ++K +V+   G+    S P +G+L  ++
Sbjct: 486 FDPDLATMLFQRFSQADTTITRRFGGTGLGLSISKTLVEMMGGQISAQSEPGRGSLFRVV 545

Query: 808 FPLYDT 813
            PL  T
Sbjct: 546 IPLART 551



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/364 (8%), Positives = 83/364 (22%), Gaps = 33/364 (9%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTT 148
           D  G   + S      +G     + G  L  +     +    +++         +     
Sbjct: 209 DMEGRFVKSSRAWETALGYPLEALEGASLLSLVHPDDVAATQDYMRHAGDCGEVFGFVNR 268

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +G    +           R+ +      FG+           A  +         +
Sbjct: 269 YRHSDGHYRQLEWRA------RRSGDLV----FGVARDVTERLREAAEMEAAKTAAEAAN 318

Query: 209 EIKKGHSSVEKEKYD-----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT------- 256
             K    +    +       +    +      +      + +      + L+        
Sbjct: 319 RAKSDFLANMSHEIRTPLNGVIGVVAALGQTGLTPAQREMVDLIQSSGETLERLVSDILD 378

Query: 257 ----EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
               E   L   E     E E    +++ +   ++   T +     S   +   +   + 
Sbjct: 379 VSKIEAGHLAIEEREFDLEAELGGLLDIARLRAEEKGLTFRVEGGASARGVFLGDSIRIR 438

Query: 313 AYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                  NL    +        V     +  A+P         +++  +   G    L  
Sbjct: 439 QVLG---NLLSNAMKFTGQGEIVA---RIEVADPPAGEQASRLTLEVQDTGVGFDPDLAT 492

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
                 +     +  R   T +  S     ++       A +        +    + +  
Sbjct: 493 MLFQRFSQADTTITRRFGGTGLGLSISKTLVEMMGGQISAQSEPGRGSLFRVVIPLARTV 552

Query: 433 IEPE 436
              +
Sbjct: 553 SLAD 556


>gi|76800727|ref|YP_325735.1| signal-transducing histidine kinase [Natronomonas pharaonis DSM
           2160]
 gi|76556592|emb|CAI48163.1| signal-transducing histidine kinase; probable PAS/PAC domain
           protein [Natronomonas pharaonis DSM 2160]
          Length = 628

 Score =  310 bits (795), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 93/635 (14%), Positives = 204/635 (32%), Gaps = 43/635 (6%)

Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD 252
              L            +     +       D  +       +   + V   +        
Sbjct: 18  QETLEALSAHDIEVSTDTTADAAFSTATAADEMATDDFDCAIVSDSTVREWSTRVPCAGV 77

Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
                   +    E    +  D       +       G L  +   +    +     +  
Sbjct: 78  DGCPVVVAVDDGNERLARDALDSFAAEFVRSETVHGDGDLLAHRVRTAISAATDVDAATH 137

Query: 313 AYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYK-------SVDDIEIAG 364
              +          DK P    ++   G +   N   +    Y        SV D E   
Sbjct: 138 RDVEARRKRLRALFDKAPDAVVLHDADGAVLDVNERLVENLGYSRSELQSMSVADFEAGH 197

Query: 365 GLSTL--LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
            + +L    +               R+D +       L+ ++ + E              
Sbjct: 198 DIESLRAFWSELDVGETGTLEGTHRRADGSTFPVEIWLNKLEIDGE-------------- 243

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
                +       +  + + ++  ++    +L  I++   D + + +  G  L  N   +
Sbjct: 244 -----VQFLAFARDITERKEHESALQRARDELRQIIDLVPDLLFVKDANGEYLLANETTA 298

Query: 483 KLFGYPVEDILRKPFTVFLEQNTP-SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
             +G   ++++ +     L   T           ++       +++    +T + +   L
Sbjct: 299 DYYGLAPDEVVGRTDAEVLPDETEAEAFREQDRHVIDSGEPTHVDRE-ELTTADGETRVL 357

Query: 542 RIIIKKLP----FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
                         +       DI+E    + +L   ++   + +     F   VSH+++
Sbjct: 358 ETTKIPFEVAGTDETAVLGYARDITERDTYERELDARRRELRESNERLQQFAYVVSHDLQ 417

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
            PL  +  + ++++++    L +    EY ++       +  +++ LL  S++E+     
Sbjct: 418 EPLRMVSSYLDLLESEYSDDL-DAEAREYIDFAVDGAERMSRMIDALLSYSRVETRGE-- 474

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
              PV       EA   ++    E    I    A+++P +LAD   + Q+  N+LSNAI 
Sbjct: 475 EPAPVDAAAVFEEAHRDLKQRIEETNARIE---ADDLPTVLADRSQLGQLFRNLLSNAIE 531

Query: 718 FTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
           +      ++       N E +  V D GVG+   + E   + F +  N+   RG GTG+G
Sbjct: 532 YAGDEPPVVDVAVERQNGEYVFAVADEGVGIHERDREDIFEVFQRGRNAD--RGSGTGIG 589

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
           L + + +VD + G  ++ ST   GT      P  +
Sbjct: 590 LAICRRIVDRHGGDIWVDSTVGDGTTFYFTLPAPE 624



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 43/376 (11%), Positives = 104/376 (27%), Gaps = 32/376 (8%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           DA G + +++E L + +G    ++  M + D      I+        L    T   + T 
Sbjct: 162 DADGAVLDVNERLVENLGYSRSELQSMSVADFEAGHDIESLRAFWSELDVGETGTLEGTH 221

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGF-GIVHVNRVDNDPRALGKRLDKKFSHLH 208
              +G+   V I L  L       E  G   F           +  +  +R   +   + 
Sbjct: 222 RRADGSTFPVEIWLNKL-------EIDGEVQFLAFARDITERKEHESALQRARDELRQII 274

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHL--RMKNKVSSLTEYYAHKDDVL----KTEKYPLL 262
           ++      V+    +                ++V   T+     D+      + +   ++
Sbjct: 275 DLVPDLLFVKDANGEYLLANETTADYYGLAPDEVVGRTDAEVLPDETEAEAFREQDRHVI 334

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
            S E +  ++E+  T +      +      +    +    L +    +    ++   +  
Sbjct: 335 DSGEPTHVDREELTTADGETRVLETTKIPFEVAGTDETAVLGYARDITERDTYERELDAR 394

Query: 323 PETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
              + +                   F  +  +   + + +      LL++    D +A  
Sbjct: 395 RRELRESNERL------------QQFAYVVSHDLQEPLRMVSSYLDLLESEYSDDLDAEA 442

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
              +        A        +               +     +          D+  RI
Sbjct: 443 REYI------DFAVDGAERMSRMIDALLSYSRVETRGEEPAPVDAAAVFEEAHRDLKQRI 496

Query: 443 NKRKMEIEVMQLCSIL 458
            +    IE   L ++L
Sbjct: 497 EETNARIEADDLPTVL 512


>gi|120553043|ref|YP_957394.1| multi-sensor hybrid histidine kinase [Marinobacter aquaeolei VT8]
 gi|120322892|gb|ABM17207.1| multi-sensor hybrid histidine kinase [Marinobacter aquaeolei VT8]
          Length = 1182

 Score =  310 bits (795), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 96/375 (25%), Positives = 172/375 (45%), Gaps = 14/375 (3%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV-EDILRKPFTVF-LE 502
           ++    + +  S+ +   +G+  ++ E   ++ N A+++L GY    ++L +   V    
Sbjct: 416 QRALANLRRYQSLFDNAIEGVFQMSPERRFVTANPAMAELLGYSSSRELLARNPDVLETC 475

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHD 560
                +    + ++ +    + +E   L    EE+  ++ +               T  D
Sbjct: 476 IADERLRRLVVEQLEARGTVKGIEARYLTRQGEERWATISLHTVYDAEGLPMHLEGTCID 535

Query: 561 ISEWKQEKN------KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
            +E  Q         +    K++A   +  KS FLA +SHEIRTPL AIIG+ E + +  
Sbjct: 536 ATESHQRLQIEREREQERLEKELARNSAQAKSQFLANMSHEIRTPLAAIIGYGETLLD-- 593

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
              L        A  + RSG  +L++VND+LD SKI++ K+++   PV+L E + E  + 
Sbjct: 594 -PDLNETEKRSSAETVVRSGRHLLELVNDILDHSKIDANKLDVDVVPVNLPELLDEIRAF 652

Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
               A EK +         +P  I  D    +QI +N+  NA+ FT +G   +I      
Sbjct: 653 FAPRAREKGLDFSIICDYPLPEKIRTDPTRYRQIIINLCGNALKFTENGSISLIIRCDRG 712

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
            E++  RV DTG+GM   +L++   PF Q   +   +  GTGLGL +++ + +   G   
Sbjct: 713 AEKLYARVVDTGIGMKPEQLDRLFDPFAQGSTAISRQYGGTGLGLSISRRLAELLGGDIR 772

Query: 794 IFSTPAKGTLIEIIF 808
           + ST  +G+  E+  
Sbjct: 773 VSSTYGEGSEFEVCI 787



 Score = 57.3 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 15/228 (6%), Positives = 61/228 (26%), Gaps = 8/228 (3%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAF-KMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTW 143
            + +         +  + + +G  +  +++      +   +  +     + + L+ + T 
Sbjct: 436 VFQMSPERRFVTANPAMAELLGYSSSRELLARNPDVLETCIADERLRRLVVEQLEARGTV 495

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
            G    +            ++   +Y          G  I       +    + +  +++
Sbjct: 496 KGIEARYLTR-QGEERWATISLHTVYDAEGLPMHLEGTCI--DATESHQRLQIEREREQE 552

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
                  +    +  +      S +   P   +     +L +   ++ +   + +  + +
Sbjct: 553 RLEKELARNSAQAKSQFLA-NMSHEIRTPLAAIIGYGETLLDPDLNETEKRSSAETVVRS 611

Query: 264 SEESSLPEQEDFHT--INLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
                    +      I+ N+         L     E   + + R   
Sbjct: 612 GRHLLELVNDILDHSKIDANKLDVDVVPVNLPELLDEIRAFFAPRARE 659


>gi|125974329|ref|YP_001038239.1| Hpt sensor hybrid histidine kinase [Clostridium thermocellum ATCC
           27405]
 gi|256003451|ref|ZP_05428441.1| Hpt sensor hybrid histidine kinase [Clostridium thermocellum DSM
           2360]
 gi|125714554|gb|ABN53046.1| Hpt sensor hybrid histidine kinase [Clostridium thermocellum ATCC
           27405]
 gi|255992475|gb|EEU02567.1| Hpt sensor hybrid histidine kinase [Clostridium thermocellum DSM
           2360]
 gi|316941476|gb|ADU75510.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum DSM
           1313]
          Length = 932

 Score =  310 bits (795), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 98/494 (19%), Positives = 188/494 (38%), Gaps = 37/494 (7%)

Query: 341 LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400
           +  A+ S  L  + +          L    +   ++         L   D          
Sbjct: 80  IDLADASDYLTDEARKFAVTRKIVHLERYWEEINVTRTRDKVISRLQELDSPKEELELLA 139

Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
              +++                    +      E          +++  E   L +I E 
Sbjct: 140 KAKKYSDALVETERRSMRLVLEALGVDESDMVPEVASFKLSEGDQRLSREDKLLKAI-EI 198

Query: 461 TSDGIAIINRE-----------GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
             D     + +             I   N+ +                   +      + 
Sbjct: 199 MYDA--RYDSDKKNIMDPIAKFQRI--MNQRLESELEAARRGTAGATVLQIILAFVIILA 254

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEE-------KLLS---LRIIIKKLPFSSCYSLTMH 559
              L  IL   +   + +  +   K+        +L+    + + +    F+  Y    +
Sbjct: 255 IAVLIRILFTQVTYPI-RDYILKLKDFSFDDEEFRLVPKGTVELNMLAENFNELYRSFHN 313

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           ++   K+ +  +  A+  A+K +  KS+FLA +SHEIRTP+ +IIG+ + +       + 
Sbjct: 314 ELVRRKKAEETMKAARDEADKANRAKSEFLASMSHEIRTPINSIIGY-QYLLKN---SVL 369

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
           +P+  EY   I  +   +L I+N +LD SKIE+G+M L     ++D+ ++E + +V + A
Sbjct: 370 SPKQREYVENIGLAAKNLLAIINQILDFSKIEAGRMVLEEVDFNIDDVLNELMIIVGMEA 429

Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH----TSN 734
             K I +R     ++PR +  D+  +KQ+ +N++SN I FT  G  I I          N
Sbjct: 430 KRKGIELRIKVDEDVPRFLKGDITRLKQVVMNLVSNGIKFTHEG-YISIRVELVEKNEEN 488

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
             +   V DTG+G+++ + +   + F Q   S   +  GTGLGL + K +V+   G+  +
Sbjct: 489 ACIKFSVTDTGIGISDEQKKLLFQAFTQGDASTSRKYGGTGLGLAICKRLVELMKGEINV 548

Query: 795 FSTPAKGTLIEIIF 808
            S   KG+      
Sbjct: 549 ESEVGKGSTFSFSL 562


>gi|169334577|ref|ZP_02861770.1| hypothetical protein ANASTE_00980 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259294|gb|EDS73260.1| hypothetical protein ANASTE_00980 [Anaerofustis stercorihominis DSM
           17244]
          Length = 928

 Score =  310 bits (795), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 107/593 (18%), Positives = 216/593 (36%), Gaps = 67/593 (11%)

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS--------LSAYFD 316
            E+S+         +      +      ++   +     +  +  +         +    
Sbjct: 93  GEASVQVTVRLPLKDKGFKWFRITATVTESEEHDVPIVYAVFSDVTDMVDKYKKTAKVCR 152

Query: 317 EGENLTPETVDKCPIPFFVYSHG--NLFYANPSFLLLTKYKSV--------DDIEIAGGL 366
           E  N     +++     ++       L Y N +     K  +         + I+     
Sbjct: 153 EKANSFEFMMEEYAGNIYISDMDNYELLYLNRTACETLKQPASSMVGRKCYEVIQGRTSP 212

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
                   ++D    +                R+  I W    +                
Sbjct: 213 CPFCTNDIINDKEFYEWEFDNPVLERTFMIKNRI--INWEGRRARL-------------- 256

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG--IILSTNRAVSKL 484
              +   +    + ++ K+  E EV     IL     G   ++      IL        L
Sbjct: 257 ---ELSYDMYSTEYKLAKKDKEREV-----ILRTLPGGFVRLDARDYETILWYGADFLNL 308

Query: 485 FGYPVEDILRK--PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
            GY  E+   K      ++  +    +   L E+   +     E   +    +  + +L 
Sbjct: 309 IGYSEEEFETKLKSKCGYVHPDDYKKIIPVLDELKETNGSTVTEIRII--RSDGSIKNLT 366

Query: 543 IIIKKLPFSSCYSLT------MHDISEWKQEKNKLSHAKKIAEK----ESSHKSDFLARV 592
           + +  +     +           D++E + E+ +   A + A +     +  K++FL+ +
Sbjct: 367 MTLCYVSEKDSWDGIPSFYSLGMDVTEERMEQERQRIALEDAYQTAKVANEAKTNFLSSM 426

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SH+IRTP+ AI+G + + K     P    +  +  N I+ S   +L ++N++LD+SKIES
Sbjct: 427 SHDIRTPMNAIMGMAAIAKMNTNEP---DKVRDCLNKINISSKHLLSLINEVLDMSKIES 483

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN-NIPRILADLRSVKQIALNI 711
           GK+NL  E + L E V     + +    EK   ++ S       +++AD   ++Q+ LN+
Sbjct: 484 GKINLMLEKIDLSELVENVADICKPLVAEKNQQLKMSVGRVRHEKVIADGDRLQQVLLNL 543

Query: 712 LSNAIHFTPSGGQII-----ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
           +SNAI +TP GG I      +S+   +  +      D G+GM    +    +PF +  +S
Sbjct: 544 MSNAIKYTPEGGTITFRINELSSAIDNLGQYEFIFIDNGIGMAEDFIPHIFEPFSRAEDS 603

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819
           +  + +GTGLG+ +   +V    G   + ST   G+   +  P+   +    C
Sbjct: 604 RISKIQGTGLGMAITDNIVRMMNGIIEVQSTLGVGSKFVVSVPMEIQNEEEMC 656


>gi|327438193|dbj|BAK14558.1| signal transduction histidine kinase [Solibacillus silvestris
           StLB046]
          Length = 611

 Score =  310 bits (795), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 83/396 (20%), Positives = 158/396 (39%), Gaps = 25/396 (6%)

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII 474
                                     +  +   E E  +L S+L   +DG+   +R+G I
Sbjct: 230 ARKVRVYGTDEIGQLAIAFNHLTNRLQEAQSTTEAERRKLASVLSNMTDGVIATDRKGKI 289

Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
           +  N    +L     E  L +P    L  +        +     ++L  ++         
Sbjct: 290 ILINDPALELLHDSRETTLNRPIASVLRLDQEYSFEDLIHMKDPVNLDFSMNDAPYVLRA 349

Query: 535 EEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
                   +I K+  F +     +HDI+E ++   +              + +F+A VSH
Sbjct: 350 N-----FSVIQKETGFVNGLITVLHDITEQEKIDME--------------RREFVANVSH 390

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYI-EYANYIDRSGNLVLDIVNDLLDISKIESG 653
           E+RTPLT +  + E +     G   +      + N        ++ +VNDLL +SK++S 
Sbjct: 391 ELRTPLTTMRSYLEALAE---GAWKDENIAPTFLNVTQTETERMIRLVNDLLQLSKMDSQ 447

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713
           +  L+ E V  ++  ++ I   +  +  + +            +  D   + Q+  NI+S
Sbjct: 448 EYELNLEFVEFNKFFTQIIDRFE-MSKSQNVEFIRLLPEKSYFVDIDTDKLTQVIDNIIS 506

Query: 714 NAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
           NA+ ++P GG I    T   N  + + + D G+G+    + +    F ++  ++     G
Sbjct: 507 NALKYSPDGGNIRFGFTVHDN-MIRVMISDDGMGIPKENVTRIFDRFYRVDRARARSMGG 565

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           TGLGL +A+ M++A+ GK +  S   +GT I    P
Sbjct: 566 TGLGLAIAREMIEAHGGKIWAESEEGQGTTIFFTLP 601


>gi|296161928|ref|ZP_06844728.1| multi-sensor hybrid histidine kinase [Burkholderia sp. Ch1-1]
 gi|295887804|gb|EFG67622.1| multi-sensor hybrid histidine kinase [Burkholderia sp. Ch1-1]
          Length = 996

 Score =  310 bits (795), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 117/658 (17%), Positives = 218/658 (33%), Gaps = 27/658 (4%)

Query: 179 RGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKN 238
           RG  IV ++R ++       R                    +   +    S        +
Sbjct: 92  RGALIVRLSREESMDGERIGRFLAIAKATAGSGSNLVKTMNDAVGLPWGLSGYIATPTAS 151

Query: 239 KVS--SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQ----YTKKQYFGTL 292
            V+   L +    +      +   LL    + L     +     ++       +     L
Sbjct: 152 AVAISPLPDLSNPQIQSAIADTARLLAYYAAGLANLASWAAAQQSRTRQLRWLRPQVDPL 211

Query: 293 QN-NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLL 351
                      +S    P              + ++        +          S    
Sbjct: 212 SGKTLLRILAPVSANGRPFGVVAGVFSPQRLIDRLEPGSFSGAYWILDERSEPVTSSASG 271

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ-WNRENS 410
               S  D  +A           ++D      + +           A     Q      +
Sbjct: 272 QLSSSERDYVMAHCQKPASATQDITDTFHDGKLSICAPLGNTGWKLAYSLPGQVIAGRVA 331

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPE-DVDTRINKRKMEIEVMQL-CSILEATSDGIAII 468
             +                   +     +     + +   +   L  +++E    G+A++
Sbjct: 332 RDIAGSAIATGLAIILLWTFVLLFNRKILVPLFERSERVFDSEHLSRTLIETVPVGLALV 391

Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528
           N +   +    A  +     V           L+Q+ P+            D   T +  
Sbjct: 392 NADNHTVLLESAHMQALEKRVAAAGDVLIGGMLKQHAPAAF-----RASRGDAATTSDVE 446

Query: 529 TLGSTKEEKLLSLR--IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
               + E   + +   +              + D++  +Q   +L+ A+  A+  ++ KS
Sbjct: 447 LHLPSGEGSTIDIAAKLTPSFYEGQPVIVAALSDVTAERQLARELTAARHAADSANAAKS 506

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
            FLA +SHEIRTPL AI+G  E+++          R       +  S   +L I+ND+LD
Sbjct: 507 AFLASMSHEIRTPLNAILGHLELLERLPQAAPVVARVR----TVASSSRALLQILNDILD 562

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVK 705
            SK+E+G+M+         + V +A S+    A  K + +  +    +PR    D   ++
Sbjct: 563 FSKVEAGEMSFESIRFDAADLVRQATSMFMPLAQRKGLALTHTIDAALPRYYLGDPGRIR 622

Query: 706 QIALNILSNAIHFTPSGGQ-IIISTTH-TSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
           Q+ +N+LSNAI FT  G   I +S         +++RV DTG+G+      +    F QI
Sbjct: 623 QMVVNLLSNAIKFTDRGSVSIEVSAGKGNPAIPLVIRVTDTGIGIPAKRQARVFDAFDQI 682

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY---DTSHPHD 818
             S   R  GTGLGL L K + +   G   + S   +G++  +  PL    DT+  H+
Sbjct: 683 DASITRRFGGTGLGLALCKRIAEGMGGTIEMSSEEGQGSIFTVTLPLRHGDDTAPAHE 740


>gi|295398638|ref|ZP_06808663.1| sensor histidine kinase VicK [Aerococcus viridans ATCC 11563]
 gi|294973126|gb|EFG48928.1| sensor histidine kinase VicK [Aerococcus viridans ATCC 11563]
          Length = 631

 Score =  310 bits (795), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 80/417 (19%), Positives = 174/417 (41%), Gaps = 42/417 (10%)

Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465
               S  +     ++  Q  E++    +   D          E E  +L S+L   +DG+
Sbjct: 230 EGNYSTTLDINSEDEIGQLAESINYLSVRVGDAQDLT-----EAERQRLDSVLRHMTDGV 284

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
              +R G I   N     +     E+++ +     L+ +          +          
Sbjct: 285 IATDRRGKITIINDRSLNILNKTQEEVIGESIIEALDLSDRFSFRELFDQ---------H 335

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAEKE 581
           E I L    +E    +R     +   S +       + DI+E ++ +             
Sbjct: 336 ESILLNYANDEGETIIRAEYSVIQRESGFISGLVWVLTDITEHEKIE------------- 382

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI-EYANYIDRSGNLVLDI 640
              +  F++ +SHE+RTPLT++  +SE + +   G + + +   E+ N I    + ++ +
Sbjct: 383 -RDRKQFVSNISHELRTPLTSVRSYSEALVD---GAIKDEKVAVEFLNVIQTETDRMIRM 438

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA-----NEKRILIRTSFANNIP 695
           ++DLL +S++++ +  ++ E +   + V+  +    +         K  +I+        
Sbjct: 439 ISDLLHLSRMDAKQQVINRELIIFKDLVNHILDRFNMMLQSEDYEGKNYIIKRELMEEEV 498

Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755
            +  D   + Q+  NI++NAI ++P GG I +    +++ +++L ++D G+G+    +  
Sbjct: 499 WVEIDQDKLIQVIDNIMNNAIKYSPDGGTIYVRL-MSTHNQLVLSIQDQGLGIPQESIPH 557

Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
               F ++  ++     G+GLGL +AK  ++ + GK ++ S   KGT   I  P  +
Sbjct: 558 LFDRFYRVDKARSRAQGGSGLGLSIAKEEIELHNGKIWVNSIENKGTTFFISLPFEE 614


>gi|158520998|ref|YP_001528868.1| PAS/PAC sensor hybrid histidine kinase [Desulfococcus oleovorans
            Hxd3]
 gi|158509824|gb|ABW66791.1| PAS/PAC sensor hybrid histidine kinase [Desulfococcus oleovorans
            Hxd3]
          Length = 1791

 Score =  310 bits (795), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 118/826 (14%), Positives = 248/826 (30%), Gaps = 121/826 (14%)

Query: 86   TWNIDAH-GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL-------- 136
             + +D+     + ++  + K  G      + + L  V     +                 
Sbjct: 835  IYILDSDTFTFRYVTPSVEKLHGLSPEVFMKLPLARVLTPETLAKVTRTIQTELAQDGSP 894

Query: 137  -LKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA 195
             L            +  +G+   V ++  A  +   N       G  +            
Sbjct: 895  GLDPDRFVSLDMEAYRADGST--VWVENTARFLRDDNGRPVSILG--VARDISERKRAET 950

Query: 196  LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR---MKNKVSSLTEYYAHKDD 252
              ++ ++++  L E                +  SP           +  +          
Sbjct: 951  AIRKSEERYRMLAENISEAIFTIDLATLKHTYASPSVKQMYGFTPEEFIARPIEQVIVPK 1010

Query: 253  VLKTEKYPLLTS----------EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302
             L      +              + ++  + + +  + +    +     L+N   E    
Sbjct: 1011 SLDRLIVAVAAELDKDGKPGVDPDRNVTLELELYRKDGSSVWVEASAKALRNADGELVAA 1070

Query: 303  LSHRNHPSLSAYFDEGENLTPE----TVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSV 357
            L      S     ++    + E     V+K     F  S  G   Y +P+   L    + 
Sbjct: 1071 LGVARDISERRKAEQALRESEEKFRTLVEKTNELIFSMSPKGVYTYMSPNVKELMGADAA 1130

Query: 358  DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
            D +                D+       +     T +    R + +Q    +        
Sbjct: 1131 DVVGRN------YAENIHRDDRPSCEADVRTLVETGVLPEGREYRVQHKNGSWRWHETSL 1184

Query: 418  FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI---LEATSDGIAIIN----- 469
              + ++        GI  +  D +      E    +L S    +    D +   +     
Sbjct: 1185 SAQKDKAGNVASIIGIARDVTDRK----ASEAAHNRLLSWHAGINRIHDRLLSADNLEDR 1240

Query: 470  ----REGIILSTNRAVSKLF------GYPVEDILRKP-------------FTVFLEQNTP 506
                 +G++ S +  + +++               +                +       
Sbjct: 1241 LKVITDGVVDSFDSLLCRIWIMGAPDRCDGRCPHGRDKKSARLCRGVSQCLHLTASSGDT 1300

Query: 507  SVMNHYLTEILSL--DLRQTLEKITLG----------STKEEKLLS----LRIIIKKLPF 550
               + Y + +      ++    +   G            K+   +     +    ++L  
Sbjct: 1301 DRTDGYYSRVPLGYEGIQWIEGREVPGFLTNDAQNTPIVKDRDWIDKNSIVSFTGRQLRD 1360

Query: 551  SSC--YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS---------------------- 586
            ++       +   +     +    ++           S                      
Sbjct: 1361 NAGNVIGALVSFATHAVDREEYEMYSNLANTASQVVLSSLAEASTKQAKEAAEAASRAKS 1420

Query: 587  DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
            +FLA +SHEIRTP+  +IG    + +           +EYA  +  S   +L I+ND+LD
Sbjct: 1421 EFLANMSHEIRTPMNGVIG----MTDLLLDTDLTEEQLEYAESVRSSAESLLVIINDVLD 1476

Query: 647  ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVK 705
             SKIE+GK+ L      L++ + E    +   A  KRI         +P +L  D   ++
Sbjct: 1477 FSKIEAGKLKLEEIDFDLEKLLKEVNDTMAPRARRKRIRHDVILKEEVPSLLKGDPVRLR 1536

Query: 706  QIALNILSNAIHFTPSGG-QIIISTTHTSN--EEVILRVRDTGVGMTNYELEKAMKPFGQ 762
            QI  N+  NA+ FT +G  ++ +S  H ++    ++  V DTG+G+     +   + F Q
Sbjct: 1537 QILFNLCENAVKFTEAGSVKVAVSAPHQTDTTATLLFEVTDTGIGIAPEHHQAIFESFSQ 1596

Query: 763  IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            +  S   +  GTGLGL + K +V    G+  + S P KG+      
Sbjct: 1597 VDASTTRQYGGTGLGLAITKRLVSLLDGEIGVTSEPGKGSTFWFTL 1642



 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 53/541 (9%), Positives = 147/541 (27%), Gaps = 48/541 (8%)

Query: 95   LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLK-----RQNTWYGKTT 148
               +S  +    G    +++ + L  +      D     + + L+       +     T 
Sbjct: 575  YAYVSPSVSTVCGYTPEELLTIPLDTLVTPSSFDRVVERLTEELQKNGKSGVDPDRAVTL 634

Query: 149  ---LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
               ++  +G+ L++   + A  +        G    G+           A  +  +K + 
Sbjct: 635  ELEVYHKDGSLLWMETTVKA--VRDETGH-PGLVA-GVARNITERKTAEAAIREREKLYR 690

Query: 206  HLHEIKKGHSSVEK-EKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEKYPLL 262
             L +      S+   E            H+R     +V           +  +     L 
Sbjct: 691  LLADNITEMISIIDIETQKHLYISPSVEHVRGFTVEEVLVQPFDRIFTSESYRLAMATLA 750

Query: 263  TSEE----------SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
               E           ++  + +    + +    +     L++ S      L+     S  
Sbjct: 751  EEIEKDGKPGVDPDRAVTLELEQFRKDGSTIWTEVVVTFLRDASGRPASMLAAARDISER 810

Query: 313  AYFD----EGENLTPETVDKCPIPFFVYSHGNLF--YANPSFLLLTKYKSVDDIEIAGGL 366
               +    + E       +      ++         Y  PS   L      +        
Sbjct: 811  KRAENAIRKSEERYRMLAENISEVIYILDSDTFTFRYVTPSVEKLHGLSP-EVFMKLPLA 869

Query: 367  STLLDAPKLSDNNAIKPVMLYRSDRTCIA---ASARLHTIQWNRENSLAMTFIPFEKANQ 423
              L           I+  +              S  +   + +    + +        + 
Sbjct: 870  RVLTPETLAKVTRTIQTELAQDGSPGLDPDRFVSLDMEAYRADGST-VWVENTARFLRDD 928

Query: 424  FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVS 482
                +   G+  +  + +  +  +     +   + E  S+ I  I+         + +V 
Sbjct: 929  NGRPVSILGVARDISERKRAETAIRKSEERYRMLAENISEAIFTIDLATLKHTYASPSVK 988

Query: 483  KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE------KITLGSTKEE 536
            +++G+  E+ + +P    +   +   +   +   L  D +  ++             K+ 
Sbjct: 989  QMYGFTPEEFIARPIEQVIVPKSLDRLIVAVAAELDKDGKPGVDPDRNVTLELELYRKDG 1048

Query: 537  KLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
              + +    K L  +            DISE ++ +  L  +++         ++ +  +
Sbjct: 1049 SSVWVEASAKALRNADGELVAALGVARDISERRKAEQALRESEEKFRTLVEKTNELIFSM 1108

Query: 593  S 593
            S
Sbjct: 1109 S 1109



 Score =  145 bits (366), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 52/546 (9%), Positives = 146/546 (26%), Gaps = 58/546 (10%)

Query: 94  YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT----- 148
                S  +  T G    + + + +  V     I+    I + ++++    GK       
Sbjct: 439 RYTYASPSVRHTYGYTVEESLSLPIDKVFTPDSIN---RILETIEKELALEGKPGVDPDR 495

Query: 149 -------LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
                   +   G+ L++   +  L               G+           A  ++ +
Sbjct: 496 HVTLELEQYHKNGSVLWIETTVKGL--RDETGRLVSV--VGVSRDITERKKAEAAIRQSE 551

Query: 202 KKFSHLHEIKKGHS---SVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
            ++  L E          + + +Y   S            ++ ++               
Sbjct: 552 ARYRLLAENISEIIYIFDITRLQYAYVSPSVSTVCGYTPEELLTIPLDTLVTPSSFDRVV 611

Query: 259 YPLLTS----------EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK----ESFEYLS 304
             L              + ++  + + +  + +    +     +++ +      +    +
Sbjct: 612 ERLTEELQKNGKSGVDPDRAVTLELEVYHKDGSLLWMETTVKAVRDETGHPGLVAGVARN 671

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEI 362
                +  A   E E L     D       +         Y +PS   +  +   + +  
Sbjct: 672 ITERKTAEAAIREREKLYRLLADNITEMISIIDIETQKHLYISPSVEHVRGFTVEEVLVQ 731

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC-----IAASARLHTIQWNRENSLAMTFIP 417
                 +  +       A     +   D         A +  L   + +         + 
Sbjct: 732 P--FDRIFTSESYRLAMATLAEEI-EKDGKPGVDPDRAVTLELEQFRKDGSTIWT-EVVV 787

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILS 476
               +             +  + +  +  +     +   + E  S+ I I++ +      
Sbjct: 788 TFLRDASGRPASMLAAARDISERKRAENAIRKSEERYRMLAENISEVIYILDSDTFTFRY 847

Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE------KITL 530
              +V KL G   E  ++ P    L   T + +   +   L+ D    L+          
Sbjct: 848 VTPSVEKLHGLSPEVFMKLPLARVLTPETLAKVTRTIQTELAQDGSPGLDPDRFVSLDME 907

Query: 531 GSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
               +   + +    + L   +           DISE K+ +  +  +++     + + S
Sbjct: 908 AYRADGSTVWVENTARFLRDDNGRPVSILGVARDISERKRAETAIRKSEERYRMLAENIS 967

Query: 587 DFLARV 592
           + +  +
Sbjct: 968 EAIFTI 973



 Score =  144 bits (363), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 45/537 (8%), Positives = 141/537 (26%), Gaps = 52/537 (9%)

Query: 94   YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ---------NTWY 144
                IS  +    G    +++      +      +        L  +         +   
Sbjct: 709  KHLYISPSVEHVRGFTVEEVLVQPFDRI---FTSESYRLAMATLAEEIEKDGKPGVDPDR 765

Query: 145  GKTTLW---PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
              T        +G+ ++  + +  L     +   +                     ++ +
Sbjct: 766  AVTLELEQFRKDGSTIWTEVVVTFL--RDASGRPASM--LAAARDISERKRAENAIRKSE 821

Query: 202  KKFSHLHEIKKGHSSVEK----------EKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD 251
            +++  L E       +               +     SP   +++        E  A   
Sbjct: 822  ERYRMLAENISEVIYILDSDTFTFRYVTPSVEKLHGLSPEVFMKLPLARVLTPETLAKVT 881

Query: 252  DVLKTEKYPLLTSE---ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
              ++TE     +     +  +    + +  + +    +     L++++      L     
Sbjct: 882  RTIQTELAQDGSPGLDPDRFVSLDMEAYRADGSTVWVENTARFLRDDNGRPVSILGVARD 941

Query: 309  P----SLSAYFDEGENLTPETVDKCPIPFFVYSHGNL--FYANPSFLLLTKYKSVDDIEI 362
                        + E       +      F      L   YA+PS   +  +   + I  
Sbjct: 942  ISERKRAETAIRKSEERYRMLAENISEAIFTIDLATLKHTYASPSVKQMYGFTPEEFIAR 1001

Query: 363  AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC-----IAASARLHTIQWNRENSLAMTFIP 417
               +  ++    L          L   D           +  L   + +  + + +    
Sbjct: 1002 P--IEQVIVPKSLDRLIVAVAAEL-DKDGKPGVDPDRNVTLELELYRKDGSS-VWVEASA 1057

Query: 418  FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
                N   E +   G+  +  + R  ++ +     +  +++E T++ I  ++ +G+    
Sbjct: 1058 KALRNADGELVAALGVARDISERRKAEQALRESEEKFRTLVEKTNELIFSMSPKGVYTYM 1117

Query: 478  NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
            +  V +L G    D++ + +   + ++        +  ++   +     +      K   
Sbjct: 1118 SPNVKELMGADAADVVGRNYAENIHRDDRPSCEADVRTLVETGVL-PEGREYRVQHKNGS 1176

Query: 538  LLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
                   +      +           D+++ K  +   +         +      L+
Sbjct: 1177 WRWHETSLSAQKDKAGNVASIIGIARDVTDRKASEAAHNRLLSWHAGINRIHDRLLS 1233



 Score =  143 bits (361), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 59/530 (11%), Positives = 150/530 (28%), Gaps = 37/530 (6%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEG 154
               ++   +  G    + +      V+          +   +     W G+  +    G
Sbjct: 179 HVYHNKAFARLFGYDTPEDLETAGGPVTRFKDPRTAEDLFSTIVSGRPWSGEVVMIDRNG 238

Query: 155 TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214
                     A  I  RN E +   G  I              ++ +  +  L E     
Sbjct: 239 REFIALHR--ADAIRDRNGEITLLMGSII--DISALKKRDTEFRQQESLYRLLAENTSEI 294

Query: 215 SSVEKEKYDIFSQQSP-----------PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
            S+   K       SP                  ++V +   +      + +        
Sbjct: 295 VSIIDLKDLSHRYLSPSVEKIRGFTLEEAMGHSLDQVLAPASHELAITAITEELARDGQP 354

Query: 264 SEESSLPEQEDFHTI--NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS----LSAYFDE 317
             +       +   +  + +    +     L++   +    L+     +      A   E
Sbjct: 355 GVDPDRHRVLELEQLRKDGSTVWTELVASFLRDTEGKPTSILTAARDITERKKAEAAIRE 414

Query: 318 GENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
            E       +      +++        YA+PS      Y   + + +        D+   
Sbjct: 415 SETRYRMVAENIGEVIYIFDLNALRYTYASPSVRHTYGYTVEESLSLPIDKVFTPDSINR 474

Query: 376 SDNNAIKPVMLYRSDR--TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
                 K + L            +  L     N  + L +        ++    +   G+
Sbjct: 475 ILETIEKELALEGKPGVDPDRHVTLELEQYHKNG-SVLWIETTVKGLRDETGRLVSVVGV 533

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDI 492
             +  + +  +  +     +   + E  S+ I I +         + +VS + GY  E++
Sbjct: 534 SRDITERKKAEAAIRQSEARYRLLAENISEIIYIFDITRLQYAYVSPSVSTVCGYTPEEL 593

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE------KITLGSTKEEKLLSLRIIIK 546
           L  P    +  ++   +   LTE L  + +  ++             K+  LL +   +K
Sbjct: 594 LTIPLDTLVTPSSFDRVVERLTEELQKNGKSGVDPDRAVTLELEVYHKDGSLLWMETTVK 653

Query: 547 KLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
            +   +      +    +I+E K  +  +   +K+    + + ++ ++ +
Sbjct: 654 AVRDETGHPGLVAGVARNITERKTAEAAIREREKLYRLLADNITEMISII 703



 Score =  138 bits (348), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 62/542 (11%), Positives = 157/542 (28%), Gaps = 46/542 (8%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID-PNNHIGDLLKRQ-----NTWYG 145
               + +S  + K  G    + +G  L  V      +     I + L R      +    
Sbjct: 302 DLSHRYLSPSVEKIRGFTLEEAMGHSLDQVLAPASHELAITAITEELARDGQPGVDPDRH 361

Query: 146 KTT---LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
           +         +G+   V  +L A  +     + +                  A  +  + 
Sbjct: 362 RVLELEQLRKDGST--VWTELVASFLRDTEGKPTSI--LTAARDITERKKAEAAIRESET 417

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSP-----PPHLRMKNKVSSLTEYYAHKDDVLKTE 257
           ++  + E       +       ++  SP       +   ++    + + +         E
Sbjct: 418 RYRMVAENIGEVIYIFDLNALRYTYASPSVRHTYGYTVEESLSLPIDKVFTPDSINRILE 477

Query: 258 KYPLLTSEESSLPEQEDFH--------TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
                 + E       D H          N +    +     L++ +      +      
Sbjct: 478 TIEKELALEGKPGVDPDRHVTLELEQYHKNGSVLWIETTVKGLRDETGRLVSVVGVSRDI 537

Query: 310 S----LSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYA--NPSFLLLTKYKSVDDIEIA 363
           +      A   + E       +      +++    L YA  +PS   +  Y   + + I 
Sbjct: 538 TERKKAEAAIRQSEARYRLLAENISEIIYIFDITRLQYAYVSPSVSTVCGYTPEELLTIP 597

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDR--TCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                   +         + +            A +  L     +  + L M        
Sbjct: 598 LDTLVTPSSFDRVVERLTEELQKNGKSGVDPDRAVTLELEVYHKDG-SLLWMETTVKAVR 656

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRA 480
           ++        G+     + +  +  +         + +  ++ I+II+ E    L  + +
Sbjct: 657 DETGHPGLVAGVARNITERKTAEAAIREREKLYRLLADNITEMISIIDIETQKHLYISPS 716

Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE------KITLGSTK 534
           V  + G+ VE++L +PF       +  +    L E +  D +  ++             K
Sbjct: 717 VEHVRGFTVEEVLVQPFDRIFTSESYRLAMATLAEEIEKDGKPGVDPDRAVTLELEQFRK 776

Query: 535 EEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
           +   +   +++  L  +S           DISE K+ +N +  +++     + + S+ + 
Sbjct: 777 DGSTIWTEVVVTFLRDASGRPASMLAAARDISERKRAENAIRKSEERYRMLAENISEVIY 836

Query: 591 RV 592
            +
Sbjct: 837 IL 838



 Score = 70.8 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/304 (10%), Positives = 81/304 (26%), Gaps = 17/304 (5%)

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDD 359
             LS     +        E       +      F         Y +PS      +   + 
Sbjct: 9   RLLSPPPDTARIQELLRTEEHYHLLANHIHEVIFTMDMDFKYTYISPSVEHQRGFTVEEA 68

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
           I +    +    + +   +   + +   R  R           +     ++         
Sbjct: 69  IHLPFDKNVTPASVEKIIDLVTRGISANREGRGPTPPQTITIEVYCKDGSTRWSELTGDF 128

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
             ++        G+     D    + ++     +    ++ TS+ I         +  N+
Sbjct: 129 LYDKNGNPTGLIGVSRYVDDREEVREELI----RFKQAIDGTSEAIGFSTPSRHHVYHNK 184

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
           A ++LFGY   + L            P       + I+S           +   +  +  
Sbjct: 185 AFARLFGYDTPEDLETAGGPVTRFKDPRTAEDLFSTIVSGR---PWSGEVVMIDRNGREF 241

Query: 540 SLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV--- 592
                   +   +        ++ DIS  K+   +    + +    + + S+ ++ +   
Sbjct: 242 IALHRADAIRDRNGEITLLMGSIIDISALKKRDTEFRQQESLYRLLAENTSEIVSIIDLK 301

Query: 593 --SH 594
             SH
Sbjct: 302 DLSH 305



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 19/158 (12%), Positives = 47/158 (29%), Gaps = 7/158 (4%)

Query: 69   DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH-I 127
            +SE  F    + +T    +++   G    +S  + + +G  A  ++G    +        
Sbjct: 1089 ESEEKFR-TLVEKTNELIFSMSPKGVYTYMSPNVKELMGADAADVVGRNYAENIHRDDRP 1147

Query: 128  DPNNHIGDLLKRQNTWYGKTTLW-PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHV 186
                 +  L++      G+        G+  +   + +      +          GI   
Sbjct: 1148 SCEADVRTLVETGVLPEGREYRVQHKNGS--WRWHETSLSAQKDKAGNV--ASIIGIARD 1203

Query: 187  NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDI 224
                    A   RL    + ++ I     S +  +  +
Sbjct: 1204 VTDRKASEAAHNRLLSWHAGINRIHDRLLSADNLEDRL 1241


>gi|104782773|ref|YP_609271.1| two-component sensor/response regulator protein [Pseudomonas
           entomophila L48]
 gi|95111760|emb|CAK16484.1| putative two-component sensor/response regulator protein
           [Pseudomonas entomophila L48]
          Length = 1210

 Score =  310 bits (795), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 136/789 (17%), Positives = 251/789 (31%), Gaps = 52/789 (6%)

Query: 49  FEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELP---KT 105
            E+ N T    E ++  +   + N   F+         +  D       IS       + 
Sbjct: 177 PEEINATYPEAELLTFESSTQALNAVAFEQAD-----VFIGDTVSTHYLISRGHLPRLRM 231

Query: 106 IGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN--TWYGKTTLWPIEGTNLYVPIDL 163
                 + +G                 +   L+ Q+  T       W     +L     L
Sbjct: 232 ANFGKHEAVGFSFA--LRDDDRMLLQLVDAALEAQSNSTRNDIFKRWSASSGSLLTDRKL 289

Query: 164 AALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYD 223
              P   R       R   ++ V    ND  A     D        +      +      
Sbjct: 290 QLSPREDR-----WLREHPVMRVV--VNDTAAPLTFFDNNDRLRGIVADLLELIRLRTGL 342

Query: 224 IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE--SSLPEQEDFHTINLN 281
            F  Q       M  ++ S                  L  S     S          +  
Sbjct: 343 RFKIQRASGDGDMIEQLESGRADIIATHSTDTRRGNALQVSRPYLESAYVLVGRGGADQP 402

Query: 282 QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNL 341
                     +      +   L    HP +     E        +    +   +     L
Sbjct: 403 SSLTLLKGKRVAVPRDSNVAALLATRHPQVRQVATESAYYAMALLGSGAVDAVIA---TL 459

Query: 342 FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401
             AN     +    S   I    G      +   +   +    +L ++  +       + 
Sbjct: 460 IDAN----HMVATGSDLVIRSTVGTEPATFSMATTAQASELASILDKALLSISPEELGVI 515

Query: 402 TIQWNRE-----------NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450
             +W                + M  +           +    +  +    +  +R +  +
Sbjct: 516 NSRWRDHGVRDDTYWRHYRKIIMQVVGVIGMLLVLALIWNARLRRQIKQRQRAERALNDQ 575

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT--VFLEQNTPSV 508
           +  + ++L  T   + + + EG + S N +  +  G   E ++ K      F + +    
Sbjct: 576 LEFMGALLNGTPHPMYVRDHEGRLQSCNDSYLQAVGASPEQVIGKRLEDTPFCDCDYTQQ 635

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLL-SLRIIIKKLPFSSCYSLTMHDISEWKQE 567
           +      +++      L++      +E  +   +      L           DISE +  
Sbjct: 636 IQDEYQRVMAQGKPLILDRPLRLKDQELTIYHWILPYRNSLGEMQGIIGGWIDISERRNL 695

Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
              L  AK+ A+  +  KS FLA +SHEIRTP+ A+IG  E+   +      +       
Sbjct: 696 VQDLRLAKQQADDANRAKSTFLATISHEIRTPMNALIGMLELALRRADQGQLD---RPAL 752

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
                S   +L ++ D+LDI++IESG + L  EPV L   V     +    A  K + ++
Sbjct: 753 EIAHHSAQDLLGLIGDILDIARIESGHLTLAPEPVDLAMLVESVGRVFDGLARHKGLALK 812

Query: 688 TSF-ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-----VILRV 741
            +        ++ D    KQ+  N++SNAI FT  G Q+ IS    +  E     + L V
Sbjct: 813 VAITDAAHCHVMLDPLRFKQVLSNLVSNAIKFTEQG-QVRISVKLRNGNEREAPILDLEV 871

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
           RD+G+G+   ++++   PF Q          GTGLGL +++ +     G+  + S    G
Sbjct: 872 RDSGIGIHEEDVQRLFTPFAQANPYSDGARAGTGLGLVISRNLCTMMGGELSLQSLQGVG 931

Query: 802 TLIEIIFPL 810
           T + ++ PL
Sbjct: 932 TRVRLVMPL 940


>gi|222085300|ref|YP_002543830.1| two-component sensor histidine kinase protein [Agrobacterium
           radiobacter K84]
 gi|221722748|gb|ACM25904.1| two-component sensor histidine kinase protein [Agrobacterium
           radiobacter K84]
          Length = 510

 Score =  310 bits (795), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 108/361 (29%), Positives = 180/361 (49%), Gaps = 8/361 (2%)

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           +LEA S  + + + +G + +        F   + D   + F   +  +   +    +  +
Sbjct: 104 MLEAASGLVLLFDPQGSVTTVGGRDRAEFLSWMRDPSGRGFIEQVHISDRILFLQAVDTL 163

Query: 517 LSLDLRQTLEKITLGS---TKEEKLLSLRIIIKKLPFSSCYSLTM----HDISEWKQEKN 569
                   ++     S      ++ + +R+ +           ++     DIS  +Q ++
Sbjct: 164 RQGRDALGVDLRLERSAVIEGNDQFIHIRMEMSARRDGEGRLTSIVSQSRDISYDQQLRD 223

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +       AE  +  KS FLA VSHE+RTPL AI+GFS+++  + FG L N R  EY   
Sbjct: 224 EADRKTAEAESANDAKSRFLAAVSHELRTPLNAILGFSDILSGEYFGKLENNRQREYVGL 283

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I +SG  +L +VN +LD+SKIE+G+  L  EP  ++ ++    +++ L A EK + + + 
Sbjct: 284 IRQSGAHLLSVVNTMLDMSKIEAGRYELVPEPFPIEASIGACEAMLALQAKEKGLTLTSR 343

Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749
               +  I+AD R+++Q+ +N++ NAI FT +GG + I         + L V DTG+G+ 
Sbjct: 344 VQRGLGDIVADQRAIQQVLINLVGNAIKFTDAGGAVTIDAAMAD-GMLKLSVCDTGIGIA 402

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
              L    +PF QI N    R  GTGLGL L K +V  + G F I S P +GT+I I+ P
Sbjct: 403 ADRLASLGQPFVQIQNDYTRRYAGTGLGLSLVKGLVGLHGGSFAIASAPGEGTVITILIP 462

Query: 810 L 810
           L
Sbjct: 463 L 463


>gi|222056653|ref|YP_002539015.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           FRC-32]
 gi|221565942|gb|ACM21914.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           FRC-32]
          Length = 636

 Score =  310 bits (795), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 84/538 (15%), Positives = 196/538 (36%), Gaps = 20/538 (3%)

Query: 278 INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS 337
           I+       +          +  E        +  A     E L         +P  V  
Sbjct: 107 ISWRSRAMAEASAKEAERRSKQAEEEIAERRKAEQALRQTYERLAQAEKIALVMPLHVSL 166

Query: 338 HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397
            G      P+F     Y+  + +            P   + +  + + L        +  
Sbjct: 167 EGCWQKVTPNFCRFLGYREEELLGRPF---RDFTHPADFEADWNQVLRL--KSGEIQSFQ 221

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
                I+ + +  +          ++  + +       +  + ++ + ++   V  L   
Sbjct: 222 MEKRFIRKDGK-IVWGYLNCSIVTDEQGKPLHFLTYVLDINEKKVVEEELRYNVATLNLA 280

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVED-ILRKPFTVFLEQNTPSVMNHYLTEI 516
            E+   G      E  +L  +    + FG P    +  K F   + +   + ++  + + 
Sbjct: 281 AESADIGTFDFYPETGVLRWSETTRRHFGLPCNAPVDYKVFLSGIHEEDRAKVDQLIRQA 340

Query: 517 LSLDLRQTLEKITLG-STKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSH 573
           L  +   + E  TLG     E+ +++R  +             T  D+S+ ++ +  L  
Sbjct: 341 LEQETGISTEFRTLGLQDGRERWIAVRGRVFYDHRGGPLRLIGTTLDMSDRRRAEEDLRK 400

Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
                 + +   + F    SH+++ PL  I  + ++++N+  G + + +   Y +Y    
Sbjct: 401 TMTDLSRSNLELAQFAYVASHDLQEPLRMIASYLQLLENKYRGNI-DEKADSYIHYAVDG 459

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693
              +  ++  LL  S+I  G +   F PV+  +  SEA++ +     E    +       
Sbjct: 460 AKRMQRLIEGLLAYSRITRGAV---FSPVNTGKVFSEALANLDASIKESGAAVH---GEG 513

Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST-THTSNEEVILRVRDTGVGMTNYE 752
           +P +  D   + Q+  N++ NAI +      ++++      + E +  V+D G+G+    
Sbjct: 514 LPTVFGDEIQLLQLFQNLIGNAIKYRRRDIPLVVTVSAQKQHGEWLFAVKDNGIGIEEEH 573

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            ++  + F ++ +  +    GTG+GL L K +V+ + G+ ++ S   +GT      P+
Sbjct: 574 YQRIFQIFQRLHS--RDEYSGTGIGLALCKRIVERHGGRIWVESVFGQGTTFLFTIPV 629



 Score = 74.3 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 35/250 (14%), Positives = 80/250 (32%), Gaps = 20/250 (8%)

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
               ++       +A+           E E  + R  ++ +     +L    +       
Sbjct: 103 GIGYISWRSRAMAEASAKEAERRSKQAEEEIAERRKAEQALRQTYERLAQAEKIALVMPL 162

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
            ++ EG          +  GY  E++L +PF  F          + +  + S +++   +
Sbjct: 163 HVSLEGCWQKVTPNFCRFLGYREEELLGRPFRDFTHPADFEADWNQVLRLKSGEIQS-FQ 221

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKES 582
                  K+ K++   +    +         +   + DI+E K  + +L +        +
Sbjct: 222 MEKRFIRKDGKIVWGYLNCSIVTDEQGKPLHFLTYVLDINEKKVVEEELRYNVATLNLAA 281

Query: 583 SHKSDFLARVSHEIRT----PLTAIIGFSEVIKNQRFGPLGNP-RYIEYANYIDRSGN-L 636
                     S +I T    P T ++ +SE  +     P   P  Y  + + I       
Sbjct: 282 E---------SADIGTFDFYPETGVLRWSETTRRHFGLPCNAPVDYKVFLSGIHEEDRAK 332

Query: 637 VLDIVNDLLD 646
           V  ++   L+
Sbjct: 333 VDQLIRQALE 342



 Score = 70.8 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 23/294 (7%), Positives = 66/294 (22%), Gaps = 25/294 (8%)

Query: 35  ETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGY 94
           E    + E    +  +      Q  E ++    +              +     +   G 
Sbjct: 123 ERRSKQAEEEIAERRKAEQALRQTYERLAQAEKIAL---------VMPLH----VSLEGC 169

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN--TWYGKTTLWPI 152
            ++++    + +G    +++G    D +     + + +    LK     ++  +      
Sbjct: 170 WQKVTPNFCRFLGYREEELLGRPFRDFTHPADFEADWNQVLRLKSGEIQSFQMEKRFIRK 229

Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212
           +G    V   L    +     +   F  +  V             +      +   E   
Sbjct: 230 DGKI--VWGYLNCSIVTDEQGKPLHFLTY--VLDINEKKVVEEELRYNVATLNLAAESAD 285

Query: 213 GHSSVEKEKYDIFSQQSPP------PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
             +     +  +             P     +    L+  +      +       L  E 
Sbjct: 286 IGTFDFYPETGVLRWSETTRRHFGLPCNAPVDYKVFLSGIHEEDRAKVDQLIRQALEQET 345

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
               E       +  +           ++       +      S     +E   
Sbjct: 346 GISTEFRTLGLQDGRERWIAVRGRVFYDHRGGPLRLIGTTLDMSDRRRAEEDLR 399


>gi|296423107|ref|XP_002841097.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295637330|emb|CAZ85288.1| unnamed protein product [Tuber melanosporum]
          Length = 1260

 Score =  310 bits (795), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 117/719 (16%), Positives = 219/719 (30%), Gaps = 67/719 (9%)

Query: 124 ILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI 183
             +             + T    +   P  G +    + L+  P  S            I
Sbjct: 265 TFNASSPGSEIAFFTTKGTTADGSCQAPQSGAS-VPDLLLSGAPASSDISSVPSVLQ-KI 322

Query: 184 VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR---MKNKV 240
             +     D   +          +    +    ++       + +      R        
Sbjct: 323 TRMKDAVLDAMEIPVFAMWHDGSIGMANRAARDLQPTDRSSENAELGTFASRYNIWTEDF 382

Query: 241 SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTIN--LNQYTKKQYFGTLQNNSKE 298
           S            L   K  L      +     D    +         +    +      
Sbjct: 383 SRRLTEDEVPIVRLLKSKKVLAPQRVGTFSATGDKIVFDTCGEGIYDDETGEFIAGLV-- 440

Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSV 357
            +          L    +  E       D  P   +     G   Y +  +   T     
Sbjct: 441 -WLRDITEYEEKLVTQQETNELRFMTMCDSMPQLIWTTLPDGYHDYYSKRWYDYTGLTKE 499

Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
           + +   G +   +   +       K      +         R    +        M    
Sbjct: 500 ESL---GMVDKSIGCHQEDMELVSKEWQHSLATGQDYTVEYRC---RRRDGVWRWMLGRA 553

Query: 418 FEKANQ-FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476
               +    + +   G   +  D    +        QL  +L+ +   +  I+R   I  
Sbjct: 554 LPLRDPKSKQIIKWYGTCTDIHDLVEARETARRTRAQLREVLQHSQITLWAIDRSNHITL 613

Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL-EKITLGSTKE 535
                        + ++        +    +     + ++L    R+   E    G   +
Sbjct: 614 LEGGAIWEAANASKAVIGSNIYDLFK--DCTEFLSPIEDVLEGRERELFSEAALHGRWLK 671

Query: 536 EKLLSLRIIIK-----KLPFSSCYSLTMHDISE----------WKQEKNKLSHAKKIAEK 580
            K + +           + +         D++E           ++E   L   +  A++
Sbjct: 672 TKYVPILGKKGIAGQYDVSYIGGIIGVSVDVTEIHNKSMELEARERENQVLVANESAAKE 731

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            S  KS+FLA +SHEIRTP+T ++G +E++ +            E+A  I RS N +L +
Sbjct: 732 ASKLKSEFLASMSHEIRTPITGVVGMAEILLDTPL----EEEQREFAENIQRSANALLTV 787

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILAD 700
           +ND+LDISK+ESG+  L  E                         +  S       ++ D
Sbjct: 788 INDILDISKVESGR--LDIEEFD--------------------HTVDFSEFGGNMTVIGD 825

Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKA 756
              V+QI  N+L+N+I FT  G  + ++      +E    V   V+D+G+G+     +K 
Sbjct: 826 PGRVRQILTNLLTNSIKFTHEGF-VKLAVGVEKEDEDVIVVKFVVKDSGIGIDEDVQQKL 884

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            +PF Q  +S   R  GTGLGL ++K +VD   G   + S+   GT    I P +   +
Sbjct: 885 FQPFTQADSSTARRFGGTGLGLTISKNLVDLMGGSIGLASSLGAGTTAHFIIPFHRPQY 943



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/376 (11%), Positives = 94/376 (25%), Gaps = 28/376 (7%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS-DILHID-PNNHIGDLLKRQNT 142
             W     GY    S+      G    + +GM    +      ++  +      L     
Sbjct: 473 LIWTTLPDGYHDYYSKRWYDYTGLTKEESLGMVDKSIGCHQEDMELVSKEWQHSLATGQD 532

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
           +  +      +G  ++  +   ALP+     +    + +G         + R   +R   
Sbjct: 533 YTVEYRCRRRDG--VWRWMLGRALPLRDPKSKQI-IKWYGTCTDIHDLVEARETARRTRA 589

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
           +   + +  +           I   +            + +                P+ 
Sbjct: 590 QLREVLQHSQITLWAIDRSNHITLLEGGAIWEAANASKAVIGSNIYDLFKDCTEFLSPIE 649

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
              E    E+E F    L+    K  +  +      + +Y        +    D      
Sbjct: 650 DVLEGR--ERELFSEAALHGRWLKTKYVPILGKKGIAGQYDVSYIGGIIGVSVD-----V 702

Query: 323 PETVDKCPIPFFVYSHGNLFYANPS-----------FLLLTKYKSVDDIEIAGGLSTLLD 371
            E  +K            +  AN S           FL    ++    I    G++ +L 
Sbjct: 703 TEIHNKSMELEARERENQVLVANESAAKEASKLKSEFLASMSHEIRTPITGVVGMAEILL 762

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
              L +        + RS    +     +  I       L       E+ +   +     
Sbjct: 763 DTPLEEEQREFAENIQRSANALLTVINDILDISKVESGRL-----DIEEFDHTVDFSEFG 817

Query: 432 GIEPEDVDTRINKRKM 447
           G      D    ++ +
Sbjct: 818 GNMTVIGDPGRVRQIL 833


>gi|143631|gb|AAA22800.1| SpoIIJ protein (gtg start codon) [Bacillus subtilis]
          Length = 606

 Score =  310 bits (795), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 103/508 (20%), Positives = 201/508 (39%), Gaps = 34/508 (6%)

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364
           H   P+         +     V+  P P  +   G + Y N + L +   KS D I    
Sbjct: 128 HEIEPASPESTTYITDDYERLVENLPSPLCISVKGKIVYVNSAMLSMLGAKSKDAIIGKS 187

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
                    +  D    + + + +           +    W R +   +          +
Sbjct: 188 SYE--FIEEEYHDIVKNRIIRMQKG------MEVGMIEQTWKRLDGTPVHLEVKASPTVY 239

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
                +  +  +    +  +  ++    +   +++   D IA+I   G  +  N +   L
Sbjct: 240 KNQQAELLLLIDISSRKKFQTILQKSRERYQLLIQNFIDTIAVI-HNGKWVFMNESGISL 298

Query: 485 FGY-PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           F     ED++ K     L       +   +  I        + K +   T + +++   +
Sbjct: 299 FEAATYEDLIGKNIYDQLHPCDHEDVKERIQNIAEQKTESEIVKQSWF-TFQNRVIYTEM 357

Query: 544 IIKKLP--FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
           +         +   + + DISE KQ +  +  ++K++           A ++HEIR PLT
Sbjct: 358 VCIPTTFFGEAAVQVILRDISERKQTEELMLKSEKLSIA-----GQLAAGIAHEIRNPLT 412

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           AI GF +++K    G         Y + +    + +  I+++LL ++K +   +    E 
Sbjct: 413 AIKGFLQLMKPTMEGNE------HYFDIVFSELSRIELILSELLMLAKPQQNAVK---EY 463

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           ++L + + E  +L++  AN   I IRTS+  +   I  D   +KQ+ +N++ NA+   P 
Sbjct: 464 LNLKKLIGEVSALLETQANLNGIFIRTSYEKDSIYINGDQNQLKQVFINLIKNAVESMPD 523

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           GG + I  T      V + V+D G G+    L +  +PF         + +GTGLGL + 
Sbjct: 524 GGTVDIIIT-EDEHSVHVTVKDEGEGIPEKVLNRIGEPFLTT------KEKGTGLGLMVT 576

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             +++ + G  ++ S P KGT  +I FP
Sbjct: 577 FNIIENHQGVIHVDSHPEKGTAFKISFP 604


>gi|120603308|ref|YP_967708.1| histidine kinase [Desulfovibrio vulgaris DP4]
 gi|120563537|gb|ABM29281.1| histidine kinase [Desulfovibrio vulgaris DP4]
          Length = 559

 Score =  310 bits (795), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 83/399 (20%), Positives = 158/399 (39%), Gaps = 28/399 (7%)

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
           +                    +      L  IL +  D I + +R   I+ +N     L+
Sbjct: 8   DGEGDTAAHARIAALEAEVEALRARERTLRDILLSIPDMITVHDRNESIVFSNWKGDDLY 67

Query: 486 --GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
                 E    + +  +            + E+    +++++E        E +     I
Sbjct: 68  WENLGGERHGSRCYGCYFRGEKQCD-ACQIAEVFDTGVQKSIE----LYNPEIRAFR-SI 121

Query: 544 IIKKLPFSSCYSLTM----HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
            +  +  ++   + +     D++  ++ + +L  AK+ AE     KS+FLA +SHEIRTP
Sbjct: 122 TVFPVHNAAGEVVMVAEYVRDVTATRRMERELRVAKEAAEAADKAKSEFLASMSHEIRTP 181

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           +  ++G  ++  + R     +    +Y      S   +L ++ND+LD SKIE+G + L  
Sbjct: 182 MNGVLGMLDLALDTRL----DDEQRDYLEAAQNSAESLLALINDILDFSKIEAGMVELDS 237

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
           +   L + +S   ++    A EK +         +P  ++ D   ++Q+ +N+L NAI F
Sbjct: 238 QAFRLRKRLSTLHTMFVHRAEEKGLAFGFRIGEEVPDGLVGDPMRLRQVLVNLLDNAIKF 297

Query: 719 TPSGGQIIISTTHTSNEE----------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
           T  G ++ +     + +           +   V D+G G+     E   + F Q   S  
Sbjct: 298 TEQG-RVYLDVQLDAAQGALPAEGEPILLRFSVTDSGPGILESHREHIFERFVQADGSLS 356

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
            R  GTGLGL + K +     G   + S P  G+     
Sbjct: 357 RRHRGTGLGLAICKRLATLMGGDITVESAPGSGSTFTFT 395


>gi|157373431|ref|YP_001472031.1| histidine kinase [Shewanella sediminis HAW-EB3]
 gi|157315805|gb|ABV34903.1| Histidine kinase [Shewanella sediminis HAW-EB3]
          Length = 931

 Score =  310 bits (795), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 91/390 (23%), Positives = 163/390 (41%), Gaps = 34/390 (8%)

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
             + K ++E     + ++  A    +  ++ +  I   N+   +    P+E++L +    
Sbjct: 249 QLLQKAEVEKSHRYIKNMASALPVHLLYVDIDKKIQFINQYSLQWLAKPMEEVLTQTCRQ 308

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS------C 553
            L     S++   +   L      TL+            +SL   I  +P          
Sbjct: 309 VLPSQLFSLIERPIETAL-QGDSITLDAEFFHKN-----MSLFFHITHIPDIDNEGRIKG 362

Query: 554 YSLTMHDISEWKQEKN--------------KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
             + + D ++ +  +                L  A++ AE  +  KS+FLA +SHEIRTP
Sbjct: 363 IFICIEDRTQTRDNEKKIEKYAHQLEMNNLALDDARETAEAAAQSKSEFLACMSHEIRTP 422

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           +  ++G   +++        +     + +    S   +L ++ND+LD SKIESGK  +  
Sbjct: 423 MNGVLGMLTLLERTAL----DQSQRNHLDTAQGSARNLLGLINDILDFSKIESGKFPIES 478

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHF 718
              SL   ++E I  + + A EK I + +   +        D   + Q+  N++ NAI F
Sbjct: 479 VNFSLTNLLNETIRPLAIRAQEKGIELVSDITDITSQSFKGDPTRISQVLTNLIGNAIKF 538

Query: 719 TPSGGQIIISTTHTSN--EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
           T  G  I +      +    +   V DTG+G+ + +LEK  +PF Q  +S      GTGL
Sbjct: 539 TEKGS-ITVYVKQNDDIEPRLNFSVEDTGIGLASNQLEKLFQPFTQADSSTTRHFGGTGL 597

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           GL +AK + +   G   + ST  KG+    
Sbjct: 598 GLSIAKRLTELMGGSISVVSTEGKGSKFSF 627


>gi|154706014|ref|YP_001424051.1| two component system histidine kinase [Coxiella burnetii Dugway
           5J108-111]
 gi|154355300|gb|ABS76762.1| two component system histidine kinase [Coxiella burnetii Dugway
           5J108-111]
          Length = 630

 Score =  310 bits (794), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 102/504 (20%), Positives = 195/504 (38%), Gaps = 43/504 (8%)

Query: 313 AYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
              +  +      +D+      + +   ++   N +     + K    I           
Sbjct: 13  KLMESQQAQFEHLIDRADDLVVIVNPDYSIIDLNNAAEQFYQCKREAVIGRN-------- 64

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
                        +   +        A L T + + +           +  Q    +   
Sbjct: 65  -------------LFEIAVEEEWQLPASLLTHRRSIKRISWSVVSLPPRYGQKGYMLTGQ 111

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-PVE 490
            I      ++I           L +IL      I   +R  + L  N   +KL G+   E
Sbjct: 112 VISKSVNASQI----------FLENILYNIPQYILWKDRNFVYLGCNHNFAKLVGFETPE 161

Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
            I+ K           + +     E+L       +E+       +E +  +  +  +   
Sbjct: 162 SIIGKTDFDLWRSQGANSIRPTDVEVLEGKQLVDVEQSLSLPNGKEGVFLISKVPLRDER 221

Query: 551 SS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
           +      +   DI+E KQ + KL  AK  AE     KS+F+A +SH++RTP+  I+G ++
Sbjct: 222 NEIIGILVVGTDITERKQNEQKLIEAKLQAELSDRAKSEFIANISHDLRTPINGILGIAQ 281

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
           +           P      N +  S NL+L +V D+LD +++E GK+ L +   +L + V
Sbjct: 282 IFNMHEHTKKQEP----LINDLSASANLLLGLVEDILDFARLEVGKLELKYSTFNLRQLV 337

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIII 727
           +  +        +K+I I   +  ++P  I+++   +++I LN++ NA+ FT  G QI +
Sbjct: 338 TFLVKTFSFQTQQKQIKINIYYDASLPDSIVSEPNYIRRIFLNLIGNAVKFTEKG-QIDV 396

Query: 728 STTHTSN--EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
           +     N    + + V+DTG+G+   +L      F +       R EG GLGL + K +V
Sbjct: 397 TVNLEGNKPAMLKILVKDTGIGIPKDKLNTIFDRFSRATPVYSSRYEGLGLGLSIIKRLV 456

Query: 786 DANMGKFYIFSTPAKGTLIEIIFP 809
           D   G+ ++ S   +G+   +  P
Sbjct: 457 DNLGGEVHVSSIENEGSTFTLTIP 480



 Score = 48.9 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/100 (14%), Positives = 35/100 (35%)

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
             + K+ ME +  Q   +++   D + I+N +  I+  N A  + +    E ++ +    
Sbjct: 8   ESVRKKLMESQQAQFEHLIDRADDLVVIVNPDYSIIDLNNAAEQFYQCKREAVIGRNLFE 67

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
              +    +    LT   S+               ++  +
Sbjct: 68  IAVEEEWQLPASLLTHRRSIKRISWSVVSLPPRYGQKGYM 107


>gi|227015847|gb|ACP17944.1| putative multi-sensor hybrid histidine kinase [Pseudomonas
           nitroreducens]
          Length = 1215

 Score =  310 bits (794), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 122/727 (16%), Positives = 251/727 (34%), Gaps = 45/727 (6%)

Query: 109 YAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPI 168
            +   +   L  V        +N I         +        I        ++    P+
Sbjct: 251 SSDAPLLRVLDHVLAATPQQIDNAIQRRWSPGGAYS-IANQRLILTPQEQRWLERNPHPV 309

Query: 169 YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228
              +R  +    F      R                S     +   +++  +  +     
Sbjct: 310 LVVDRALAPISFFDSQQNFRGIAADLLELIHARTGLSFDVRPEPSVTAMLDDAMNG---- 365

Query: 229 SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288
                   K K          +++ L   +  +  S    +     +     +   ++  
Sbjct: 366 --------KAKAIGALTPTMEREEWLTFTRPYMTASFVVVVANNSGWFHSLADLRGRRVA 417

Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSF 348
                       E         ++   D+ + ++   VD       + +  N    +  +
Sbjct: 418 VPKASVLENFMREKHPEVQLVLVANNVDDLQMISEGKVDA---GIHLSTSANYL-ISRYY 473

Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR----TCIAASARLHTIQ 404
             L    S+D       ++     P+L        + +   D     +  +A+       
Sbjct: 474 RDLRVAASLDREPGQFSIAVSQTDPELLSILNKAILAISPDDMASLISRWSATVESPDSV 533

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
           W    +  M  +           +    ++ +    R++++++   +    ++++     
Sbjct: 534 WEGYRTQIMQLLSIGIVLLCAVLLWNWRLQVKVRRRRLSEKELSYRLGFKRALIDGIPHP 593

Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV--FLEQNTPSVMNHYLTEILSLDLR 522
           +A+ +REG +L+ NR+  ++ G   E           +L       ++  L + +     
Sbjct: 594 VAVRDREGRLLTCNRSYLEVTGMTREAAQGSRLIDCDWLPAEQAQALHDELLQAIDQGTA 653

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH----DISEWKQEKNKLSHAKKIA 578
            T +++          + +         S    L +     D++E ++  ++L  AK  A
Sbjct: 654 LTADRVFRVR---GNEMEVYHWATPYRGSKGEVLGLVSGWLDVTERERLHHQLQAAKDQA 710

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
           E+ +  KS FLA +SHEIRTP+ A+IG  E +   R G     R  E       S   +L
Sbjct: 711 EEANRAKSTFLATMSHEIRTPMNAVIGMLE-LALTRSGQGHWER--EPVEVAYDSAKSLL 767

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI-PRI 697
            ++ D+LD++KIESG++ L  E   L E V     +    A +K + ++     +    +
Sbjct: 768 TLIGDILDVAKIESGRLTLMPERARLRELVESIARVFDGLARQKGLELKVEIEADAACEV 827

Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS--NEEVIL--RVRDTGVGMTNYEL 753
           L D   +KQI  N++SNAI FT  G Q+ I           + L   V D+G+G++  + 
Sbjct: 828 LIDPLRLKQILSNLVSNAIKFTDKG-QVRIQVGGERLVGGRIALNVAVEDSGIGISTSDQ 886

Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF----- 808
            +  +PF Q   +      GTGLGL + + + +   G   + S    GT + +       
Sbjct: 887 AQLFEPFSQASQNSHASRGGTGLGLTICRKLAEMMGGSVCLESQLGYGTRVSVSLLLQVL 946

Query: 809 -PLYDTS 814
            PL + +
Sbjct: 947 EPLPEEA 953



 Score = 44.6 bits (104), Expect = 0.077,   Method: Composition-based stats.
 Identities = 45/423 (10%), Positives = 100/423 (23%), Gaps = 35/423 (8%)

Query: 90   DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
            D  G L   +    +  G       G RL D   +          +LL+  +     T  
Sbjct: 598  DREGRLLTCNRSYLEVTGMTREAAQGSRLIDCDWLPAEQAQALHDELLQAIDQGTALTAD 657

Query: 150  WPIEGTNLYVPIDLAALPIYSRNREFSG-FRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                     + +   A P      E  G   G+  V      +      K   ++ +   
Sbjct: 658  RVFRVRGNEMEVYHWATPYRGSKGEVLGLVSGWLDVTERERLHHQLQAAKDQAEEANRAK 717

Query: 209  EIKKGHSSVE----------------KEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD 252
                   S E                        ++ P        K             
Sbjct: 718  STFLATMSHEIRTPMNAVIGMLELALTRSGQGHWEREPVEVAYDSAKSLLTLIGDILDVA 777

Query: 253  VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL--SHRNHPS 310
             +++ +  L+          E    +      +K     ++  +  + E L    R    
Sbjct: 778  KIESGRLTLMPERARLRELVESIARVFDGLARQKGLELKVEIEADAACEVLIDPLRLKQI 837

Query: 311  LSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLL---TKYKSVDDIEIAGGLS 367
            LS         T +   +  +       G +   N +               +      +
Sbjct: 838  LSNLVSNAIKFTDKGQVRIQVGGERLVGGRI-ALNVAVEDSGIGISTSDQAQLFEPFSQA 896

Query: 368  TLLDAPKLSDNNAIKPVMLYRSD--RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
            +               +    ++     +   ++L        + L     P  +    P
Sbjct: 897  SQNSHASRGGTGLGLTICRKLAEMMGGSVCLESQLGYGTRVSVSLLLQVLEPLPEEAPAP 956

Query: 426  ----ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII------NREGIIL 475
                +   ++       D   N+  +  ++  L   ++  SDG   +      + + +I 
Sbjct: 957  KVEAQARGRSLRVLVVDDHAANRLLLSQQLEHLGHQVDVASDGAEALQIWHPGDFDLVIT 1016

Query: 476  STN 478
              N
Sbjct: 1017 DCN 1019


>gi|172056770|ref|YP_001813230.1| integral membrane sensor signal transduction histidine kinase
           [Exiguobacterium sibiricum 255-15]
 gi|171989291|gb|ACB60213.1| integral membrane sensor signal transduction histidine kinase
           [Exiguobacterium sibiricum 255-15]
          Length = 854

 Score =  310 bits (794), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 106/590 (17%), Positives = 214/590 (36%), Gaps = 39/590 (6%)

Query: 237 KNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS 296
           K+++  L   +      +   K  LL   E    +QE+          ++Q        +
Sbjct: 269 KDEIGILALSFNQMASSISDNKQHLLAKNEELQAQQEELQAQQEELQAQQQELEEALELT 328

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANP-SFLLLTKYK 355
             + ++L +RN  + +    E     PE ++K  I       G L + +  S   +  + 
Sbjct: 329 MRNEQHLQYRNDLTETLAAREALTAYPEIIEKL-IAITDSEIGALVFVDEGSAYSIVTHG 387

Query: 356 SVDDIEIA--GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR------ 407
             +++     G   +LL   +           +                +          
Sbjct: 388 MTEELSERLLGSDLSLLKRAESLKKAVHSSKQVASDHPLPYPYYMYETAVPIFDPASEEA 447

Query: 408 -ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
                 + +       Q  + M  +      +       +M  E  +   IL++  + + 
Sbjct: 448 IAFIYLVRYRDQFTNEQMRDIMSFSRQLSLSLLRMRLFDEMNREKTKTERILDSIREAVI 507

Query: 467 IINREGIILSTNRAVSKLF-----GYPVEDILRKPFTVFLEQNTPSV-MNHYLTEILSLD 520
            I      +  NR +  LF     G    + L+                  Y+  IL  +
Sbjct: 508 YIEPGKDEVFVNRPLYDLFPELQYGAAKNETLQGCLNTIRAVVDEPEIFARYMEGILRGE 567

Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-CYSLTMHDISEWKQEKNKLSHAKKIAE 579
           + +   + ++    +   +   +   ++        L + D++                 
Sbjct: 568 VPKDSLQFSIHQ--QVVFIQFYVETIEVEGIRKGTMLVLRDVT--------------KET 611

Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639
           +    KS+ ++ VSHE+RTPL++I GF+E++ N++       +  +Y   I      + +
Sbjct: 612 EMDRLKSELVSTVSHELRTPLSSIYGFTELMLNRKM---DLSKQDKYLKTIHSETERLSN 668

Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA 699
           +VND LD+ ++E+   +     ++L   + E             I  R S  +  P I A
Sbjct: 669 LVNDFLDVQRMEARIQSYQKGLLNLQPLLEETTQFYAASTTNHTITFR-SLTDACPLIEA 727

Query: 700 DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKP 759
           D   +KQ+  N+L+NA+ ++P GG I +      +  V   VRD G+G+    L K    
Sbjct: 728 DEEKMKQLMNNLLNNAVKYSPFGGNIEVVLE-ADHHHVQFAVRDEGIGIPKSALAKLFDK 786

Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           F ++ NS   +  GTGLGL + K +V+ + G+  + S   +G+   +  P
Sbjct: 787 FYRVDNSDSRKIGGTGLGLAICKEIVEGHDGEITVESVEKQGSTFTVKLP 836


>gi|77360565|ref|YP_340140.1| sensor protein [Pseudoalteromonas haloplanktis TAC125]
 gi|76875476|emb|CAI86697.1| putative sensor protein [Pseudoalteromonas haloplanktis TAC125]
          Length = 1019

 Score =  310 bits (794), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 81/381 (21%), Positives = 156/381 (40%), Gaps = 35/381 (9%)

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
             Q  +++E + D I  I+  G ++  N    ++FG   + +                  
Sbjct: 364 KEQNNTVIENSLDAIFSISESGKVVQFNNTAKQVFG---DILESDNVNFISLFTLNKEDE 420

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF----SSCYSLTMHDISEWKQ 566
             + E +    +       + +     +    I +  +          +  + DIS  K 
Sbjct: 421 KCIRETIKNGSKMPF--EAMHTDSSGNIYYYSITLSSIYDVFNERYQVAAILRDISSLKN 478

Query: 567 EKNKLSHAKK------------------IAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
            + +L                        A   S  KSDF+A +SHEIRTP+  ++G  E
Sbjct: 479 IQAELEGVNTTLELKVSQRTRELERAIDEALAASQAKSDFVANISHEIRTPMNGVLGMLE 538

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
           ++K        + +   Y    + S N +++++ND+LD SKIE+GK+++      +    
Sbjct: 539 MLKEDGL----SEQQHHYLKLANSSANSLMNLINDILDFSKIEAGKLDIDNHSFDVVTVC 594

Query: 669 SEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQ-II 726
           S+ I+ + L    K + +     N +   ++ D   +KQI +N+++NA  FT  G   + 
Sbjct: 595 SDMINSLALQGQRKGLEVFLHTHNIVDRMVVGDSHRLKQILINLVNNAFKFTHKGEVSLT 654

Query: 727 ISTTHTSNEEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
           I + + ++ ++     V+DTG+G+    ++K  + F Q  +S      GTGLGL + K +
Sbjct: 655 IGSKYITDTKLQMSFAVKDTGIGIAAENIDKLFEVFTQEDSSTTRHFGGTGLGLSICKKL 714

Query: 785 VDANMGKFYIFSTPAKGTLIE 805
                G   + S    G+   
Sbjct: 715 AQLMGGNISLTSEKGVGSTFT 735


>gi|311235469|gb|ADP88322.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
            vulgaris RCH1]
          Length = 1097

 Score =  310 bits (794), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 109/797 (13%), Positives = 239/797 (29%), Gaps = 74/797 (9%)

Query: 70   SENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLC-DVSDILHID 128
            SE           V      D  G    ++ +     G  A   +      + +D   + 
Sbjct: 325  SEADQRTLTELSPVGIV-TFDPAGRPSYLNRQGRDIAGMTADDPLPAFFALEDTDGGSLI 383

Query: 129  PNNH-IGDLLKRQNTWYGKTTLWP-IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHV 186
             ++     + +   T        P  +GT   + ++   L +    R             
Sbjct: 384  GDDSPFVRVFREGLTLTDFEAWLPMPDGTRKLLSVNATPLVVGREQRN---HGVVATFED 440

Query: 187  NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF-----SQQSPPPHLRMKNKVS 241
                   +   ++ +K+F+ L  +      +      +      S        R +    
Sbjct: 441  VTERRMAQERLQQSEKRFATLFRLSPDSIVLSSFDTGLVVDVNDSFCQLHGLGRDEVVGR 500

Query: 242  SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLN--QYTKKQYFGTLQNNSKES 299
            SL +   + D         L+  +   +  +    ++       +       +   +   
Sbjct: 501  SLRDIGLYDDPAQLDGIITLVREKGRVVDLELRARSLKGEELYLSLSSQLMVIGEANYRL 560

Query: 300  FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVD 358
                             E   L    +D  P+   +  + G     N +F  +    + +
Sbjct: 561  TVVRDMTERYRAEQELHEKRLLLEGILDSVPVSIFWKDAAGRFMGCNRTFAQMVGLDTPE 620

Query: 359  DIEIAGGLS-TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
             +         LL     +   A + VM      T       +  + +       +    
Sbjct: 621  TVIGKDDADLGLLPGLAETFREADRKVMA-----TLSPMLGYVERLAFADGRERMLETSK 675

Query: 418  FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILS 476
                      +   G+  +  ++   + ++     +   +   + + +A+++  +     
Sbjct: 676  LPLLAADGRAVGVLGLIRDITESLAAQEQLRQSEERFSRLFRYSPEAMALVDMADQRFAD 735

Query: 477  TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
             N A  +L GY   +++ +           +     L  I +            G TKE 
Sbjct: 736  VNHAFERLTGYEASELVGRGTIEMAFYTDATTRAELLRRIHTEGF--VDNYEFEGRTKEG 793

Query: 537  KLLS--LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
              +   +   I  +         + DI+E K+ +  +   +K+            A ++H
Sbjct: 794  TPMPCSISCSILSIGDRRFILGLVRDITEMKRMQEVMIQTEKMISVGGIA-----AGIAH 848

Query: 595  EIRTPLTAIIGFSEVIKNQRFGP------------LGNPRYIEYA---------NYIDRS 633
            EI  PL  I+  +  +  +                L      +Y            I  +
Sbjct: 849  EINNPLGIILQAAHNLAQRTRPDFAKNLDVATRVGLDMDALRQYMAQRKLDVFIEDIRDA 908

Query: 634  GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL------VQLYANEKRILIR 687
                  I+  +LD S+    K      P  +   + +A++L      ++   + +RI I 
Sbjct: 909  AVRASAIIRHMLDFSRSGGSK----RVPCDVTSILDKAVALAGSDYDLKKSYDFRRITIT 964

Query: 688  TSFANNIPRILADLRSVKQIALNILSNAIHF---TPSGGQ---IIISTTHTSNEEVILRV 741
              +   +P +      ++Q+ LN+L NA H    +   G+   I +         V++ V
Sbjct: 965  RDYEAGLPLVDCSPTELEQVLLNLLRNAAHALAESHRDGEGPAIHLRVRRQDE-TVVIDV 1023

Query: 742  RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA-NMGKFYIFSTPAK 800
            +D G G+      +  +PF            GTGLGL ++  +V   + G   + + P  
Sbjct: 1024 QDNGPGIPVALQRRIFEPFYTTKPPGV----GTGLGLSVSYFIVTKGHGGNLTVVTPPEG 1079

Query: 801  GTLIEIIFPLYDTSHPH 817
            GTL  I  PL  ++  H
Sbjct: 1080 GTLFRIELPLQGSTEAH 1096



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/407 (9%), Positives = 89/407 (21%), Gaps = 22/407 (5%)

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247
                   +     +        +              +             + +     
Sbjct: 70  TESIAREEVLVLALENSYIGRSARASAQRKLDAYIRNGTFDQVFLFNLEGEAILAGDPSL 129

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
           A + +V     +    +  ++L       +                 +           N
Sbjct: 130 AGRVNVADRRYFSEAAAGRAALETVVVSRSTGKPSLVMASPLRAF--DGTVVGVVAGVTN 187

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
             + +    EG ++            F+     +    P++L          +   GG S
Sbjct: 188 IETFAKAILEGSHIGRTG------GAFITDTDGVVLGLPAWLSAGSLG----LHEGGGFS 237

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW-----NRENSLAMTFIPFEKAN 422
               A         +     R      + S       W       E  +          +
Sbjct: 238 DAHVAALKQSAETGEVYRFTRGGNHRASYSRLNGATHWLLTLEADEGEVLAPARRLAAVS 297

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
                +    +       R     +        ++ E +  GI   +  G     NR   
Sbjct: 298 GSILLVTLITVALILGVLRRAMVSLRHSEADQRTLTELSPVGIVTFDPAGRPSYLNRQGR 357

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNH--YLTEILSLDLRQTLEKITLGSTKEEKLLS 540
            + G   +D L   F +        + +   ++            E          KLLS
Sbjct: 358 DIAGMTADDPLPAFFALEDTDGGSLIGDDSPFVRVFREGLTLTDFEAWLPMPDGTRKLLS 417

Query: 541 LRIII---KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
           +        +   +     T  D++E +  + +L  ++K        
Sbjct: 418 VNATPLVVGREQRNHGVVATFEDVTERRMAQERLQQSEKRFATLFRL 464


>gi|159045872|ref|YP_001534666.1| sensor histidine kinase/response regulator [Dinoroseobacter shibae
           DFL 12]
 gi|157913632|gb|ABV95065.1| sensor histidine kinase/response regulator [Dinoroseobacter shibae
           DFL 12]
          Length = 819

 Score =  310 bits (794), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 91/409 (22%), Positives = 177/409 (43%), Gaps = 18/409 (4%)

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG 472
           ++   F  ++Q  E         +  +    +  +     +L +  E   DG A+ +   
Sbjct: 38  LSRHAFTLSDQIVEQRHAAEELKD--ENFQVRSDLRRAEQRLWTSFETIEDGFAVFDASR 95

Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
            ++  N A   +F    +      +   L       +      +   D    +E    G+
Sbjct: 96  RLVLANPAYVSIFDGLEDVAPGIGYAELLRLCAEEGIIDT-EGLSRQDWCAQMEMRWNGA 154

Query: 533 TKEEKLLSL----RIIIKKLPFSSCYSLTM-HDISEWKQEKNKLSHAKKIAEKESSHKSD 587
             E  ++ L     I + +        +++  +I++  + + +L+ A+  AE  +  KS 
Sbjct: 155 QIEPAVVRLWNGFSIKLVERRGEDGDIVSLCLNITDTIKREQELTLARTRAEAANRAKSA 214

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           FLA +SHE+RTP+  ++  SE++         +     Y   I +SG  +L I+ND+LD 
Sbjct: 215 FLANMSHELRTPMNGVVAMSELLNESAL----DEEQALYVETIRKSGEALLVIINDVLDY 270

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQ 706
           SK+E+ K+ LH  P  L+  + + + L +  A EK + +   +   +P   + D   ++Q
Sbjct: 271 SKMEAEKLQLHPAPFDLERLMHDVVMLTKPTAQEKSVDLMLDYDIFLPSHFIGDQGRLRQ 330

Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSNE---EVILRVRDTGVGMTNYELEKAMKPFGQI 763
           +  N+L NA+ FT  G  +I        +   E+I+ + DTG+G+    ++     F Q 
Sbjct: 331 VMTNLLGNAVKFTLEGHVLIRVIGMPPEDGTQEIIVSIEDTGIGIAPEMIDHIFGEFNQA 390

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII--FPL 810
            + +    EGTGLGL + K ++D   G+ ++ S   +G+        PL
Sbjct: 391 EDERNRAFEGTGLGLAITKQLIDLMGGEIWVDSEIGEGSCFSFRIALPL 439


>gi|328470975|gb|EGF41886.1| sensor protein LuxQ [Vibrio parahaemolyticus 10329]
          Length = 858

 Score =  310 bits (794), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 83/376 (22%), Positives = 163/376 (43%), Gaps = 23/376 (6%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            ++E +      +       I + +  G+++  N A  K      +     P     +  
Sbjct: 350 EELEAQKRSFRDLFNFALSPIMVWSEAGVLIQINPAARKELVIENDIETMHPVFKGFKDK 409

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISE 563
               +           +   +          +K+    +   ++    S   +   DI+ 
Sbjct: 410 LVPHLRMAAQGATLTGVNVPI---------GDKVFRWNLSPIRVDGDISGIIVQGQDITT 460

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + + + + A++ AEK +  ++DFLA++SHEIRTP+  I+G ++++K+     +     
Sbjct: 461 LIEAEKQSNLARREAEKSAQARADFLAKMSHEIRTPINGILGVAQLLKD----SVEAEEQ 516

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
               + +  SG  +L ++ND+LD SKIE GK N+   P S  + +    ++ +     K 
Sbjct: 517 KNQIDVLRHSGEHLLAVLNDILDFSKIEQGKFNIQKHPFSFADTMRTLENIYRPICENKG 576

Query: 684 ILIRTS--FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-----SNEE 736
           + +        N+  I  D   + QI  N++SNA+ FTPSG  + +           N  
Sbjct: 577 VELVIENQLDGNV-EIFTDQVRLNQILFNLVSNAVKFTPSG-CVRLHAELEQFYGADNSV 634

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           +++ + DTG+G+ + +L++  +PF Q   +      G+GLGL + K +VD   G   + S
Sbjct: 635 LVVEISDTGIGIESDKLDEMFEPFVQEEATTTREYGGSGLGLTIVKNLVDMLDGDVQVRS 694

Query: 797 TPAKGTLIEIIFPLYD 812
              +GT   +  P+ D
Sbjct: 695 QKGQGTTFVVTLPVKD 710


>gi|256828151|ref|YP_003156879.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfomicrobium baculatum DSM 4028]
 gi|256577327|gb|ACU88463.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfomicrobium baculatum DSM 4028]
          Length = 612

 Score =  310 bits (794), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 82/368 (22%), Positives = 153/368 (41%), Gaps = 28/368 (7%)

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
            E  +  ++LE+  DG+ I + E  +   N A  ++F  P  +         +  +    
Sbjct: 259 AEKNKSEAVLESIEDGLVIFDLELKVAGINPAAWRIFDLPPVEDPGLRCGDIIPDSR--- 315

Query: 509 MNHYLTEILSLDLRQTL---EKITLGSTKEE---KLLSLRIIIKKLPFSSCYSLTMHDIS 562
           +   + + +      T+   +++      E     L S+ +I       S   L + DI+
Sbjct: 316 LCDLIRDTVETGWPPTMPDEQRVISFQHAEGAAHYLFSITVIRGIERDLSGVVLLLKDIT 375

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
             KQ +                KSDF+   SHE+RTPLT+ +G S  +  +        +
Sbjct: 376 RLKQVE--------------QLKSDFVMAASHELRTPLTS-LGMSVDLLLEHASHNLAEK 420

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             E         + +  +V+DLLD+SKIE+G++ + FE V +        S+ +     K
Sbjct: 421 DRELLLAAHEEVHRMKSLVSDLLDLSKIEAGRIEMEFEDVPVATFFEHMQSVFKSQMELK 480

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
            +   +    ++P + AD   +  +  N++SNA+ +   GG + +         V L V+
Sbjct: 481 EVAFVSGIQGDLPLVRADANKIAWVLSNLVSNALRYVNRGGCVAL-MAQQFGAHVHLSVK 539

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G+G+      +    F Q+         G+GLGL + K +V A+ G  ++ S P +G+
Sbjct: 540 DDGLGIPEEYQARIFHKFVQVKG---QEAGGSGLGLAICKEIVRAHGGTIWVESVPGRGS 596

Query: 803 LIEIIFPL 810
                 P+
Sbjct: 597 TFTFTLPV 604


>gi|172036328|ref|YP_001802829.1| sensory transduction histidine kinase [Cyanothece sp. ATCC 51142]
 gi|171697782|gb|ACB50763.1| probable sensory transduction histidine kinase [Cyanothece sp. ATCC
            51142]
          Length = 1317

 Score =  310 bits (794), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 89/424 (20%), Positives = 182/424 (42%), Gaps = 38/424 (8%)

Query: 405  WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK-MEIEVMQLCSILEATSD 463
            ++ +          +   Q    +     + E +     + + ++  +  L +I++   D
Sbjct: 912  YDNQKPRYWYKREIDLLKQVGNQLGVAVHQSELLRQTQEQSETLQTTLADLNAIVDNLGD 971

Query: 464  GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
            G+ + +  G I   N ++  +F   +  +L K       +         L        + 
Sbjct: 972  GLLVADIYGRITRYNPSLVSMFNVTLP-LLGKQLLDIFPEELSP----LLERKKLDQKKV 1026

Query: 524  TLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEK 580
               +I L + +  + L+  II +++          + + DI++ ++ +            
Sbjct: 1027 VAVEIPLSNNRIGQALASNIIKEQVESGEEYLGVVILIRDITKEREME------------ 1074

Query: 581  ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN-------------QRFGPLGNPRYIEYA 627
                K +FL+ VSHE+RTPLT+I+GFS +I++              +       R  +  
Sbjct: 1075 --RMKRNFLSMVSHELRTPLTSIVGFSSLIRDKLHAVVFPQIQEKDKKVDKAVERIKQNL 1132

Query: 628  NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
            + +      +  +VND LD++KIESGK+ L   PV     ++ AI+       +  + + 
Sbjct: 1133 DIVVFEAERLTKLVNDFLDMTKIESGKITLSLFPVKPSTVLTWAIASTAPLFEDSSVELI 1192

Query: 688  TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747
              F   +P IL D   + Q+ +N++SN   FT +G  +        ++ +++ + DTG+G
Sbjct: 1193 EDFPEELPTILGDEDRLIQVFVNLISNGFKFTETGS-VTCHGEV-DHDNLLISITDTGIG 1250

Query: 748  MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
            +   +  K  +PF Q+ N    + +GTGLGL ++K +++ + GK +  S   KG+   + 
Sbjct: 1251 IAENDYSKVFEPFQQVGNILTNKPKGTGLGLSISKQIIEQHGGKIWFTSERQKGSTFFVS 1310

Query: 808  FPLY 811
             PL 
Sbjct: 1311 LPLA 1314


>gi|46484678|gb|AAS98248.1| sensor protein [Listonella anguillarum]
          Length = 848

 Score =  310 bits (794), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 89/392 (22%), Positives = 171/392 (43%), Gaps = 38/392 (9%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           +++  +  Q   +   +   I + + +G I+  N +  K F                  +
Sbjct: 351 QRLSEQEKQFEDLFNFSLSPIIVWSIDGDIIKMNPSAKKYF--------------MRRND 396

Query: 505 TPSVMNHYLTEILSLDLRQTLE----KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
               +   L + L   +R  +E    +        +        I              D
Sbjct: 397 QQQCILDALKQELQPKIRLAVEQETFREINVEVGNKVFRWNLSPIIFEQRIESIITQGQD 456

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I+   +   +   A++ AE+ +  +++FLA++SHE+RTPL  I+G S+++K +    + +
Sbjct: 457 ITTIAEAAKQSRLARQEAEESARIRAEFLAKMSHELRTPLNGILGVSQLLKRE----ISD 512

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
              +E  N +  SG  +L ++ND+LD SKIE G+  +      L E +S   S+ +    
Sbjct: 513 HEQLEQVNVLCSSGEHLLAVLNDILDFSKIEQGQFRIQESDFKLVEVISAVESIYRPLCA 572

Query: 681 EKRIL--IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738
           EK I   ++++   ++  I +D   + QI  N+L+NA  FT  G  I I     +N ++ 
Sbjct: 573 EKEIEFSLKSNIPPDM-MIHSDQVRLNQILFNLLNNATKFTHHG-LISIEFQQKNNHQLF 630

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           + + DTG+G+   +L    +PF Q+ ++      G+GLGL + K++++   G   + S  
Sbjct: 631 ISISDTGIGIREQDLALIFEPFTQVESNTTREYGGSGLGLAIVKSLIEMLGGAVNVKSQF 690

Query: 799 AKGTLIEIIFPL------------YDTSHPHD 818
             GT   +  PL            Y+ + PH+
Sbjct: 691 GVGTTFSVELPLVVVSDCGKDIPSYERAPPHE 722


>gi|83312725|ref|YP_422989.1| sensor protein fixL [Magnetospirillum magneticum AMB-1]
 gi|82947566|dbj|BAE52430.1| Sensor protein fixL [Magnetospirillum magneticum AMB-1]
          Length = 548

 Score =  310 bits (794), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 84/530 (15%), Positives = 180/530 (33%), Gaps = 27/530 (5%)

Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFL 349
            L     E     +      +       E+     +D  P  F+     G L   + S  
Sbjct: 40  RLAAVLGEEVSRQAEALETQVERQVQARED-LRAILDNMPDIFYRTDTEGRLLMVSRSVE 98

Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
            L  Y   + +    GL +        D+       L  +  + I    RL   +     
Sbjct: 99  GLLGYTVEEVL----GLDSAFFH-GSDDSRPQLVAALEAAGGSIIDYELRL---RHKDGR 150

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469
            L  +       +         G+     + +  +  +      + ++L+A+SD I +  
Sbjct: 151 ILWASTSSRFYLDAQGRRGGTEGVVRLIEERKRTELYIRENQALIQAMLDASSDAIMLFR 210

Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
            +G +L+ N  ++  FG    ++           +        +T ++            
Sbjct: 211 PDGTLLAVNEVMAARFGRRATELTGSCLWDMFPPDVAKAREEAVTRVVQTG-------EA 263

Query: 530 LGSTKEEKLLSLRIIIKKLPFSSCY---SLTM-HDISEWKQEKNKLSHAKKIAEKESSHK 585
           +        L L   I  +P              DI+     + K++      E+ ++  
Sbjct: 264 IHYLDRRGDLYLDNSIYPVPGVDGVPDKVAVYSRDITAQTLAEQKVATYLAELERSNAEL 323

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
             F    SH++R PL  I  +   +  +R+ P      +E+  +       +  +V DLL
Sbjct: 324 EQFAYVASHDLREPLRMISSYL-SLLERRYAPKLEGDGLEFLAFARDGAQRMDRLVLDLL 382

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
           D S+I+     +    +  D  + +A+  +     E    +  +      R++ D   V 
Sbjct: 383 DFSRIQRKGSPI--VAMDADPLLHQALRHLAPAIEESGGAVEVAEGGEAVRVMGDPDQVI 440

Query: 706 QIALNILSNAIHFTPSGGQIIISTTH-TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764
           ++  N++ NA+ +       ++  +   +  E    V D G+G+     E+    F ++ 
Sbjct: 441 RLFQNLIGNAVKYRAPDRAPLVKVSWQRTGGEWECVVADNGIGIDPQYFERIFGIFQRLH 500

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
                   GTG+GL + K +V+ + G+ ++ S P +G++     P    +
Sbjct: 501 TPDA--YAGTGIGLAICKKIVERHGGRIWVESVPDQGSVFHFTLPAAQPT 548



 Score = 83.5 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/186 (13%), Positives = 62/186 (33%), Gaps = 8/186 (4%)

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
                +  +    +++    + +      +      +R+++     L +IL+   D    
Sbjct: 25  GYVAILIALMLVDSDRLAAVLGEEVSRQAEALETQVERQVQARED-LRAILDNMPDIFYR 83

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
            + EG +L  +R+V  L GY VE++L      F   +        L   L       ++ 
Sbjct: 84  TDTEGRLLMVSRSVEGLLGYTVEEVLGLDSAFFHGSDDS---RPQLVAALEAAGGSIIDY 140

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESS 583
                 K+ ++L      +    +          +  I E K+ +  +   + + +    
Sbjct: 141 ELRLRHKDGRILWASTSSRFYLDAQGRRGGTEGVVRLIEERKRTELYIRENQALIQAMLD 200

Query: 584 HKSDFL 589
             SD +
Sbjct: 201 ASSDAI 206



 Score = 65.8 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 26/301 (8%), Positives = 72/301 (23%), Gaps = 13/301 (4%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG- 145
           +  D  G L  +S  +   +G    +++G+                +  L     +    
Sbjct: 82  YRTDTEGRLLMVSRSVEGLLGYTVEEVLGLD-SAFFHGSDDSRPQLVAALEAAGGSIIDY 140

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +  L   +G  L+     ++           G  G  +V +           +       
Sbjct: 141 ELRLRHKDGRILWAST--SSRFYLDAQGRRGGTEG--VVRLIEERKRTELYIRENQALIQ 196

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQS---PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP-L 261
            + +       + +    + +           R      S        D     E+    
Sbjct: 197 AMLDASSDAIMLFRPDGTLLAVNEVMAARFGRRATELTGSCLWDMFPPDVAKAREEAVTR 256

Query: 262 LTSEESSLPEQEDFHT--INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
           +     ++   +      ++ + Y      G     +  S +  +        A +    
Sbjct: 257 VVQTGEAIHYLDRRGDLYLDNSIYPVPGVDGVPDKVAVYSRDITAQTLAEQKVATYLAEL 316

Query: 320 NLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
             +   +++       +          S+L L + +    +E  G              +
Sbjct: 317 ERSNAELEQFAY-VASHDLREPLRMISSYLSLLERRYAPKLEGDGLEFLAFARDGAQRMD 375

Query: 380 A 380
            
Sbjct: 376 R 376


>gi|298243490|ref|ZP_06967297.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297556544|gb|EFH90408.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 403

 Score =  310 bits (794), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 82/401 (20%), Positives = 157/401 (39%), Gaps = 25/401 (6%)

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
           +  E        P     +  +       + L S +  + D + +++++  +  +N A  
Sbjct: 10  REEETYDLAVASPRRGRRKREETVPLERELVLTSFMTHSPDALLVLDKDFRLRESNPAAR 69

Query: 483 KLFGYP-------VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
           ++   P        +                   +  L  +L  D      +  L   KE
Sbjct: 70  EMLRLPVGKPGTLWKCREVLRCKNLNRMELCGTSSCPLARVLQQDEP-LQNEELLVGAKE 128

Query: 536 EKLLSLR--IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
           E    +   +    +         + D+S  K                +  +S+F++ VS
Sbjct: 129 EIFCEVSTSVTPIHIAAEPYAVWALRDLSALK--------------VANQVRSNFVSMVS 174

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HE+RTPL ++ GF E++     G L N     Y  Y       ++ IV D+L +++ + G
Sbjct: 175 HELRTPLNSVHGFIELLWQGHMGEL-NDEQRLYLGYAQEGVQQLISIVEDILFMTRSDLG 233

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713
           +     + V L E V      +Q  A +  + +        P +  D + +KQ+  N++S
Sbjct: 234 QFETKQQGVQLLELVRLVTQSLQPQAVKAGVALVLEIVPETPLLYVDPQRIKQVLNNLIS 293

Query: 714 NAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
           NAI +TP GG + I+ +       ++ V DTG G+   +     + F Q  +SQQ +  G
Sbjct: 294 NAIKYTPPGGSVTITASVHDARFQMISVTDTGYGIQVEDRPHIFERFYQSNHSQQSKMGG 353

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
            GLGL +A+ +V+ + G     +   KG+      P+ + +
Sbjct: 354 YGLGLSIARLIVEQHGGTISFDTVVGKGSSFYFTLPILEGA 394


>gi|300087268|ref|YP_003757790.1| PAS/PAC sensor signal transduction histidine kinase
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527001|gb|ADJ25469.1| PAS/PAC sensor signal transduction histidine kinase
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 568

 Score =  310 bits (794), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 95/602 (15%), Positives = 200/602 (33%), Gaps = 52/602 (8%)

Query: 236 MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN 295
           M+  VS  +     +             +   S   Q +    + +    +     + + 
Sbjct: 1   MEQAVSPDSLGILKQALDEAMTAIASNETAPESRYFQVEQPCKDGSTVWTEVSASLVLDE 60

Query: 296 SKES---FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-----HGNLFYANPS 347
            K S       +              E    +  +      + +       G     N  
Sbjct: 61  GKPSYVLGVSRNITGRLRTETELRRSEEKYRQLFNSINDAIYFHEIGDDGRGRFIEVNEG 120

Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
              L  Y   + + ++  +           +       + ++      A      +  + 
Sbjct: 121 ATRLMGYNRDEFLAMSPVV-------LDGPDAVEDATAVRQAMEKEGHAVFERVHVTRDG 173

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
                         +          +  +  + +  + ++E    Q  +  +A +  I+I
Sbjct: 174 RRIPVEISSRSVHIDGN---TMYLSVVRDITERKAMEARLEQAASQWRATFDAITTPISI 230

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
            NR+  IL  NRA ++      +D++ +         T  V        L     + +E 
Sbjct: 231 QNRQYRILQVNRAFAEAMKSSPQDLIGRTCFEVSHGTTEPVPTCPHRRTLESGQAEQVEV 290

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESS 583
                  + +     I    +  +    +       DI+E ++ + +L    ++A     
Sbjct: 291 HNAELNTDTR-----ISTYPMFGADGEIIASVHITEDITEQRKMQEQLMVTNRLA----- 340

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
              +  A ++HEI  PLT I+GFSE++                   I    N    I+ +
Sbjct: 341 SVGELAAGIAHEINNPLTGILGFSELLMENNL----PENLRADVETIHSEANRAAGIIKN 396

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703
           LL  ++    + +   E + ++E V   ++L    AN   I +    A +IP I+ D   
Sbjct: 397 LLVFAR----QHHQVREELDVNEVVERVLTLRAYEANLNNIQVVRHLAPDIPMIIGDHFQ 452

Query: 704 VKQIALNILSNA----IHFTPSGGQIIISTTH-TSNEEVILRVRDTGVGMTNYELEKAMK 758
           ++Q+ LN++ NA    +    + G + ++T++    E V L   D G G+      +   
Sbjct: 453 LQQVFLNLVINAEYFMLKA-HNKGTLTVATSYDRETERVRLVFTDDGPGVAPDIQARLFD 511

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
           PF    +     G+GTGLGL ++  ++  + G   + S P +G    I  PL  +  P +
Sbjct: 512 PFFTTKD----VGQGTGLGLSISHGVIKQHGGTIRVESQPGQGASFIIELPLKPS--PEE 565

Query: 819 CI 820
            +
Sbjct: 566 AV 567



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/297 (10%), Positives = 82/297 (27%), Gaps = 16/297 (5%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D  G   E++E   + +G    + + M    +     ++    +   ++++     +   
Sbjct: 109 DGRGRFIEVNEGATRLMGYNRDEFLAMSPVVLDGPDAVEDATAVRQAMEKEGHAVFERVH 168

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
              +G    +P+++++  ++  +          +V          A  ++   ++    +
Sbjct: 169 VTRDGR--RIPVEISSRSVH-IDGN---TMYLSVVRDITERKAMEARLEQAASQWRATFD 222

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHL--RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
                 S++  +Y I                 +   T +             P   + ES
Sbjct: 223 AITTPISIQNRQYRILQVNRAFAEAMKSSPQDLIGRTCFEVSHGTTEPVPTCPHRRTLES 282

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
              EQ + H   LN  T+   +  +     E    +      +      E   +T     
Sbjct: 283 GQAEQVEVHNAELNTDTRISTY-PMFGADGEIIASVHITEDITEQRKMQEQLMVTNRLA- 340

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
                    + G     N     +  +   + +        L    +   + A +  
Sbjct: 341 ----SVGELAAGIAHEINNPLTGILGFS--ELLMENNLPENLRADVETIHSEANRAA 391


>gi|317051227|ref|YP_004112343.1| PAS sensor protein [Desulfurispirillum indicum S5]
 gi|316946311|gb|ADU65787.1| PAS sensor protein [Desulfurispirillum indicum S5]
          Length = 1000

 Score =  310 bits (794), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 96/466 (20%), Positives = 184/466 (39%), Gaps = 28/466 (6%)

Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
           + +       +  L   P L D        +  +DR  I       TI    +    +  
Sbjct: 256 APEHYTNRLRMGVLKSEPMLRDILDRAIATITHADREEIVNRHVNITIVQPVDYGFVLRV 315

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII--NREGI 473
                       +        ++  R     ++        ++      +     +R   
Sbjct: 316 -------AAGLILLIALAMYWNMRLRRLNHSLQESERSKSLLISNLPGMVYRCRYDRTWT 368

Query: 474 ILSTNRAVSKLFGYPVEDILRK---PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530
           +   +    +L GY  ED++      F   ++      +        +L     LE    
Sbjct: 369 MEFVSEGCFELTGYRPEDLVENRVVSFDQLIDPADHEWIWQTWQRARALGQPARLEYSIT 428

Query: 531 GSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
             T   +   L      +   S   +     + D++E K  + ++  A++ AE  ++ KS
Sbjct: 429 --TASGQTKWLFEQGDFVLNDSGDVVALEGLIIDVTERKLLEQEMLAARQQAEAANAVKS 486

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
           +FLA +SHEIRTP+ A++G   +    +          +  +    +   +LDI+ND+LD
Sbjct: 487 EFLANMSHEIRTPMNAVLGLIYLCLQTQLSA----EQRDMLSRSYAAAESLLDILNDILD 542

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVK 705
           ISKIE+GK+ +      L E + +  +L++    EK +    +    +P  ++ D   + 
Sbjct: 543 ISKIEAGKLEVEQVEFPLAEVLDKVFNLLKFRVEEKGLKHSVTVDEEVPSTVIGDPMRLG 602

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTS--NEEVILRV--RDTGVGMTNYELEKAMKPFG 761
           Q+ LNI  NA+ FT  G  + +     +  + +++LR   RDTG+GM++ ++E   + F 
Sbjct: 603 QVLLNIAGNAVKFTEQGS-VSLELFCEAGVDGDLVLRFVFRDTGIGMSHEQMENLFESFN 661

Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           Q   +   +  GTGLGL +++ +V    G   + S P KG+     
Sbjct: 662 QTDTTITRKYGGTGLGLAISRRLVHLMGGDIQVESEPGKGSTFTFS 707


>gi|157372575|ref|YP_001480564.1| aerobic respiration control sensor protein ArcB [Serratia
           proteamaculans 568]
 gi|157324339|gb|ABV43436.1| multi-sensor hybrid histidine kinase [Serratia proteamaculans 568]
          Length = 779

 Score =  310 bits (794), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 86/436 (19%), Positives = 180/436 (41%), Gaps = 17/436 (3%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L             L+    +  + L        KA +  + +  + +  E
Sbjct: 81  EESRQRLTRLVDKLEEMRHRDLELNQQLKDNISQLNQEIADRIKAEEERQQV-MDKLTGE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
                + + ++  +   L S L+A+ D +   N +      NRA+  L G   + ++   
Sbjct: 140 MEQRELAQIELGQQSALLRSFLDASPDLVYYRNEDKEFSGCNRAMELLTGKSEKQLIGLT 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII--KKLPFSSCY 554
                 +     +     ++   ++  T E+  +     +    LR +    ++      
Sbjct: 200 PFDVYGEEIAEKVIETDEKVFRHNVSLTYEQWLVYPDGRKACFELRKVPFYDRVGKRHGL 259

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+ ++ L +        S  K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 260 MGFGRDITERKRYQDALEN-------ASRDKTTFISTISHELRTPLNGIVGLSRILLDTE 312

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                N   ++Y   I  S   + +I ND++++ K+E  K+ L  +PV     +++  +L
Sbjct: 313 L----NDEQLKYLKTIHVSAITLGNIFNDIIEMDKLERRKVQLDNQPVDFTGFLADLENL 368

Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
             L    K +         +P+ I+AD   ++QI  N++ NA+ FTP G QI++      
Sbjct: 369 SGLLVQPKGLQFVMEPQQPLPQQIIADGTRLRQILWNLIGNAVKFTPQG-QIVVRVRREE 427

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQI-PNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
            + ++  V D+G+G+   E +K    + Q+          GTG+GL ++K +  +  G  
Sbjct: 428 QDRLVFEVEDSGMGIPQDEQDKIFAMYYQVKDQHGGRPATGTGIGLAVSKRLAQSMGGDI 487

Query: 793 YIFSTPAKGTLIEIIF 808
            + S   +G+   +  
Sbjct: 488 TVSSVQGQGSCFTLSI 503


>gi|254492365|ref|ZP_05105537.1| hypothetical protein MDMS009_2707 [Methylophaga thiooxidans DMS010]
 gi|224462257|gb|EEF78534.1| hypothetical protein MDMS009_2707 [Methylophaga thiooxydans DMS010]
          Length = 994

 Score =  310 bits (794), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 89/386 (23%), Positives = 164/386 (42%), Gaps = 14/386 (3%)

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE- 490
           G     V  +      +    +L    +A + G+A  N E   L  +  +  L+GY    
Sbjct: 323 GRNQARVSEQRAIVDFQNSQQRLQLAADAGNMGLAEWNLEEGKLYWDDRMLALYGYTQGT 382

Query: 491 -DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
            D     +   +     + +   +           L+   +  +KE + ++  I++++  
Sbjct: 383 FDDGMAAWQQRVHPEDQAEVIKQVETARQFKQHFDLQFRIVLPSKEIRHIAASIVVERNR 442

Query: 550 FSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
                      +DISE KQ +  L   +  AE  +  + +FLA +SHEIRTP+  ++G  
Sbjct: 443 TGQAVRMVGFHYDISEHKQVEAILKTERDDAESANRSRGEFLANMSHEIRTPINGVMGAM 502

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
            ++ +               N   RS   +L I+ND+LD+SKIESGK+ +  E V+L   
Sbjct: 503 NLLADTPLSA----SQHNLLNISKRSAESLLGIINDILDLSKIESGKLEIIEEEVALVNT 558

Query: 668 VSEAISLVQLYANEKRILIRT--SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ- 724
           + +   L+   A  K I +     + + +  +  D   ++Q+  N+L+NAI FT  G   
Sbjct: 559 LCDVARLLSAKAESKHIELLCPAHYLDEV-SVKVDGLRLRQVLTNLLNNAIKFTEQGSVK 617

Query: 725 --IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
             + + +  +   ++   V DTG G+   +     + F Q+ +S   R  G+GLGL ++K
Sbjct: 618 LSVDVLSQTSDKLKLRFNVVDTGQGIAADQQALLFQRFQQVDSSLTRREGGSGLGLSISK 677

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIF 808
            +V+   G   + S    G+      
Sbjct: 678 QLVELMGGTIGVESELGIGSRFWFEL 703


>gi|172036434|ref|YP_001802935.1| two-component sensor histidine kinase [Cyanothece sp. ATCC 51142]
 gi|171697888|gb|ACB50869.1| two-component sensor histidine kinase [Cyanothece sp. ATCC 51142]
          Length = 1303

 Score =  310 bits (794), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 102/663 (15%), Positives = 213/663 (32%), Gaps = 57/663 (8%)

Query: 185  HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL---RMKNKVS 241
              +          +  + K   L        S+   +  +         +    ++    
Sbjct: 651  RNDASRKQAEQEKEASENKLQALLTYSSDIVSIFDREGQLIYNSPAAEKIHGFSLEEMQD 710

Query: 242  SLTEYYAHKDDVLKTEK--YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ---NNS 296
              T Y  H DD  +  K    LL   + ++  Q  + T        +          N  
Sbjct: 711  IKTFYLIHPDDRTRVGKTFSYLLHHPQETITVQYRYQTKRNEYVWMETVASNQLHNPNIQ 770

Query: 297  KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-------GNLFYANPSFL 349
                                E E    +  +     F++              Y +P+  
Sbjct: 771  GIVANSRDISERKQAEEALRESEQKFRQLAENIHEVFWMIELSKTDPTYHKSLYVSPACK 830

Query: 350  LLTKYKSVDDIEIA-GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
             +  Y   D  +     +  +   P+         +                  I W   
Sbjct: 831  DIWGYNPEDIYKNPTQWIEAI--HPEDRQQIKKNLLQKLLQGGFDYHY-----RIIWPDG 883

Query: 409  NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI------------------E 450
                +    F   NQ  + +   G+  +  + +  +++++                    
Sbjct: 884  TLHWIRDRGFPVKNQSGDLVRVTGLAEDITEQKQREQEIKRLNEQLEQQNQELEERVAQR 943

Query: 451  VMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVED-ILRKPFTVFLEQNTPSV 508
              +L  +L    D + ++ R    +L  N+  ++  G+     I                
Sbjct: 944  TAELEMLLNTLPDFVFVVERNTMKLLFCNQVFAQGIGFDSHQQIQGTSIFECFSPEMADY 1003

Query: 509  MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-CYSLTMHDISEWKQE 567
                  ++ +      LE+I      +    + ++ ++ L         T  D++E  + 
Sbjct: 1004 FVQQNQQVFNSGETLHLEEIIALPNGDRYFDTYKVPLQNLQGEIYALLGTSRDMTELVRT 1063

Query: 568  KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ--RFGPLGNPRYIE 625
            K  L       E  +     F   VSH++R PL  I GF   +K +        +P+ I 
Sbjct: 1064 KQVLMERTTQLEVTNQELDSFCYSVSHDLRAPLRHIHGFVNALKQRLVDTDAKEDPKVIH 1123

Query: 626  YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
            Y   I++S   +  +++ LL +S++  G+  L F  V+++  V  AIS+V     E +I 
Sbjct: 1124 YLEVIEKSSEKMGHLIDGLLTLSRV--GRRELVFYDVNINAVVETAISMVSS--GEDQIK 1179

Query: 686  IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
                    +P +  D+  ++Q+ +N+L N+I F+     I I      +    + V D G
Sbjct: 1180 FEI---GQLPTVPGDMALLQQVFINLLQNSIKFSRERNPIKIEINCLEDG--TIFVADNG 1234

Query: 746  VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
            VG      ++    F ++ +  Q   EGTG+GL + + ++  + G+ +  S   +G    
Sbjct: 1235 VGFDMKYADQLFGAFQRLHS--QKDFEGTGIGLSIVQRIIHRHGGQIWAESVVGEGATFY 1292

Query: 806  IIF 808
            +  
Sbjct: 1293 LKL 1295



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 46/433 (10%), Positives = 116/433 (26%), Gaps = 32/433 (7%)

Query: 179 RGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLR 235
           R   +  +     +     K+ + KF  +         +   +  +            L+
Sbjct: 66  RSLALKQLKTELAEEITKRKKREAKFRAIFHQTFELIGLLDLEGRLVEVNLTALNSMGLK 125

Query: 236 MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFH----TINLNQYTKKQYFGT 291
           +     +L        D  + +        E+   E   F       N            
Sbjct: 126 VDEIRETLFWENPWWGDSSELQTQIKTAILEAKQGENIRFETTYLDSNGQNNNVDFSLKP 185

Query: 292 LQNNSKESFEYLSHRNHPSL----SAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPS 347
           +++ + +    L      +          E +       +  P  FF            S
Sbjct: 186 VKDEAGDIVFLLFEGRDITTIKKVQKELRENQEELEAIFNVIPDLFFRVKADGTIIDYKS 245

Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
                 Y S +          L   P        K +       T ++    L       
Sbjct: 246 SANSLLYVSPEIFLQKPLTEIL---PPTVSKKVEKAIADTLKHNTLVSLEYSLQMST--G 300

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
           E       +P+++            I      T+  +  ++     L +I++     + +
Sbjct: 301 EEHYEARLVPYKEQ-------QIIAIVRNMTQTKKAELDLKKSKTFLQTIIDYLPVALFV 353

Query: 468 INRE----GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
            +      G +L  N+    + G     ++ K           +       E+ +  + +
Sbjct: 354 KDARPDKFGQVLLLNKYCEDIVGLNSSQVIGKTGHDLFPPEQANSYEQQDREVFAQGVPK 413

Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAE 579
            + +  + S  + +  ++R +   L               DI++ K+ + +L  +  + +
Sbjct: 414 KIPEELIDSYNKGRR-TVRTVKVPLYDEDKNPEYLVCITEDITQEKKAEIELKKSNDLLQ 472

Query: 580 KESSHKSDFLARV 592
             +  +S F+A  
Sbjct: 473 GITLAQSQFIADA 485



 Score = 86.2 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 63/527 (11%), Positives = 143/527 (27%), Gaps = 72/527 (13%)

Query: 72  NTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN 131
              +F    R  +F       G +  +++     +G  + ++IG    D+      +   
Sbjct: 348 PVALFVKDARPDKF-------GQVLLLNKYCEDIVGLNSSQVIGKTGHDLFPPEQANSYE 400

Query: 132 HIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN 191
                +  Q                    +    +P+Y  ++         I      + 
Sbjct: 401 QQDREVFAQGVPKKIPEELIDSYNKGRRTVRTVKVPLYDEDKNPEYL--VCITEDITQEK 458

Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD 251
                 K+ +     +   +    +      ++         L + +   S      H  
Sbjct: 459 KAEIELKKSNDLLQGITLAQSQFIA--DAPPNVLFNDLLETLLSLTDSEYSFIAEIGHSH 516

Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
                 +Y L  +      +        +N    +        N+  + E+         
Sbjct: 517 Q----GEYSLEETHIKVRGKSYLKTHAFMNITWNEATREFYSENAPHAMEF--------- 563

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
                         +          + G    AN        + + D I           
Sbjct: 564 ------------HNLKTLFTAVM--TTGKPVIAN--------HPNRDSIGRDLPKGHRFL 601

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
              L       P    +     +  +    +  ++    L     PF           +N
Sbjct: 602 DAFLG-----LPFYHNQQLVGIVGVANSQESYNYD----LVEYLQPFLTTCANLIKAYRN 652

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
               +  +      +      +L ++L  +SD ++I +REG ++  + A  K+ G+ +E+
Sbjct: 653 DASRKQAEQEKEASE-----NKLQALLTYSSDIVSIFDREGQLIYNSPAAEKIHGFSLEE 707

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK---KL 548
           +        +  +  + +    + +L    ++T+       TK  + + +  +       
Sbjct: 708 MQDIKTFYLIHPDDRTRVGKTFSYLL-HHPQETITVQYRYQTKRNEYVWMETVASNQLHN 766

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
           P          DISE KQ +  L        +ES  K   LA   HE
Sbjct: 767 PNIQGIVANSRDISERKQAEEAL--------RESEQKFRQLAENIHE 805



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 45/417 (10%), Positives = 105/417 (25%), Gaps = 30/417 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCD-----VSDILHIDPNNHIGDLLKRQNTW 143
           +D  G L E++     ++G    ++      +      S  L       I +  + +N  
Sbjct: 105 LDLEGRLVEVNLTALNSMGLKVDEIRETLFWENPWWGDSSELQTQIKTAILEAKQGENI- 163

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +TT     G N    +D +  P+     +       G           +   +   ++
Sbjct: 164 RFETTYLDSNGQNNN--VDFSLKPVKDEAGDIVFLLFEG--RDITTIKKVQKELRENQEE 219

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS----SLTEYYAHKDDVLKTEKY 259
              +  +        K    I   +S    L   +        LTE           +  
Sbjct: 220 LEAIFNVIPDLFFRVKADGTIIDYKSSANSLLYVSPEIFLQKPLTEILPPTVSKKVEKAI 279

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
                  + +  +         ++   +         +      +            + +
Sbjct: 280 ADTLKHNTLVSLEYSLQMSTGEEH--YEARLVPYKEQQIIAIVRNMTQTKKAELDLKKSK 337

Query: 320 NLTPETVDKCPIPFFVYSH-----GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
                 +D  P+  FV        G +   N     +    S   I   G    L    +
Sbjct: 338 TFLQTIIDYLPVALFVKDARPDKFGQVLLLNKYCEDIVGLNSSQVIGKTGH--DLFPPEQ 395

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
            +        +  +     I     L         ++    +P    ++ PE +    I 
Sbjct: 396 ANSYEQQDREVFAQGVPKKIPEE--LIDSYNKGRRTVRTVKVPLYDEDKNPEYL--VCIT 451

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
            +    +  + +++     L  I    +    I +    +L  N  +  L      +
Sbjct: 452 EDITQEKKAEIELKKSNDLLQGI--TLAQSQFIADAPPNVLF-NDLLETLLSLTDSE 505



 Score = 70.8 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 38/319 (11%), Positives = 102/319 (31%), Gaps = 35/319 (10%)

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
                ++    +      K +    +  +I   T + I +++ EG ++  N       G 
Sbjct: 65  RRSLALKQLKTELAEEITKRKKREAKFRAIFHQTFELIGLLDLEGRLVEVNLTALNSMGL 124

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLT-EILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
            V++I    F         S +   +   IL     + +   T       +  ++   +K
Sbjct: 125 KVDEIRETLFWENPWWGDSSELQTQIKTAILEAKQGENIRFETTYLDSNGQNNNVDFSLK 184

Query: 547 KLPFSSCYSLTM----HDISEWKQEKNKLSHAKKIAEKESSHKSDFL------ARVSHEI 596
            +   +   + +     DI+  K+ + +L   ++  E   +   D          +  + 
Sbjct: 185 PVKDEAGDIVFLLFEGRDITTIKKVQKELRENQEELEAIFNVIPDLFFRVKADGTII-DY 243

Query: 597 RTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS-KIESGK 654
           ++   +++  S E+   +    +  P   +              +V+  L+ S ++ +G+
Sbjct: 244 KSSANSLLYVSPEIFLQKPLTEILPPTVSKKVEKAIADTLKHNTLVS--LEYSLQMSTGE 301

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILAD------------LR 702
            +     V   E   + I++V+     K+  +    +    + + D              
Sbjct: 302 EHYEARLVPYKE--QQIIAIVRNMTQTKKAELDLKKSKTFLQTIIDYLPVALFVKDARPD 359

Query: 703 SVKQIALNILSNAIHFTPS 721
              Q+   +L N   +   
Sbjct: 360 KFGQV---LLLN--KYCED 373



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 50/454 (11%), Positives = 98/454 (21%), Gaps = 62/454 (13%)

Query: 38   KSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKE 97
            K+ + +      EQ     +N+     T   D  + F               D  G L  
Sbjct: 648  KAYRNDASRKQAEQEKEASENKLQALLTYSSDIVSIF---------------DREGQLIY 692

Query: 98   ISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTWYGKTTLWPIEGTN 156
             S    K  G    +M  ++   +               LL            +  +  N
Sbjct: 693  NSPAAEKIHGFSLEEMQDIKTFYLIHPDDRTRVGKTFSYLLHHPQETITVQYRYQTK-RN 751

Query: 157  LYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSS 216
             YV ++  A      N    G                    +  ++KF  L E       
Sbjct: 752  EYVWMETVASNQL-HNPNIQGI--VANSRDISERKQAEEALRESEQKFRQLAENIHEVFW 808

Query: 217  VEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY-----------AHKDDVLKTEKYPLLTSE 265
            + +      +             +                   H +D  + +K  L    
Sbjct: 809  MIELSKTDPTYHKSLYVSPACKDIWGYNPEDIYKNPTQWIEAIHPEDRQQIKKNLLQKLL 868

Query: 266  ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE- 324
            +            +   +  +     ++N S +           +     ++      E 
Sbjct: 869  QGGFDYHYRIIWPDGTLHWIRDRGFPVKNQSGDLVRVTGLAEDITEQKQREQEIKRLNEQ 928

Query: 325  ---------------------TVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIE 361
                                  ++  P   FV       L + N  F     + S   I+
Sbjct: 929  LEQQNQELEERVAQRTAELEMLLNTLPDFVFVVERNTMKLLFCNQVFAQGIGFDSHQQIQ 988

Query: 362  IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                                + V         +     +     N +       +P    
Sbjct: 989  GTSIFECFSPEMADYFVQQNQQVFNS---GETLHLEEIIA--LPNGDRYFDTYKVPL--Q 1041

Query: 422  NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
            N   E     G   +  +    K+ +     QL 
Sbjct: 1042 NLQGEIYALLGTSRDMTELVRTKQVLMERTTQLE 1075


>gi|168702308|ref|ZP_02734585.1| two-component sensor histidine kinase PhoR [Gemmata obscuriglobus
           UQM 2246]
          Length = 461

 Score =  310 bits (794), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 79/373 (21%), Positives = 158/373 (42%), Gaps = 25/373 (6%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           R ++ +  QL +IL    +G+  I+ +  +L  N    +L  +     + +         
Sbjct: 111 RLLDHDREQLRAILSGMVEGVVAIDDQRRVLFANERAGQLLEFDPRKAVNQKLCDV---T 167

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564
             +  +  + + L+       E    G     + L + +            + ++D +E 
Sbjct: 168 RLAPFHAIVEQGLTAAEPHREEFDVPG--SGGRHLEVYVSRFPGQGMPGAVVVVNDTTEV 225

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           +Q +                + DF+A  SHE++TP+  I    E +++            
Sbjct: 226 RQAE--------------RMRQDFVANASHELKTPIAVIKSSVEALQDG--AAEDPHTLA 269

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
            +   + R  + +  +V D+L +S+IESG + L    V LD  +S+ +      A+ K +
Sbjct: 270 SFLEQVARESDRMTYLVKDMLSLSRIESGSLGLEPRVVVLDREISDCMERHHPRADTKTL 329

Query: 685 LIRTSFANNIPR---ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
            +      + P      AD  +++Q+  N++ NAI +TP+GG+I +    T++  V   V
Sbjct: 330 TLVEKPPPDAPANVAAWADPDALRQVMDNLVDNAIKYTPNGGRITVRWGATAD-TVSFEV 388

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            DTGVG+   ++ +  + F ++  ++      TGLGL + K +V A  G+  + S   KG
Sbjct: 389 EDTGVGIPEGDVNRVFERFYRVDRARGRAEGSTGLGLSIVKHLVQAMRGQVRVNSKLGKG 448

Query: 802 TLIEIIFPLYDTS 814
           T   +  P   ++
Sbjct: 449 TTFRVTLPRAGSA 461


>gi|227431460|ref|ZP_03913509.1| PAS/PAC sensor signal transduction histidine kinase [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
 gi|227352826|gb|EEJ43003.1| PAS/PAC sensor signal transduction histidine kinase [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
          Length = 623

 Score =  310 bits (794), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 96/499 (19%), Positives = 186/499 (37%), Gaps = 42/499 (8%)

Query: 330 PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389
           P+     S G L     S +++ K   +   +    +  L     L    A   + L+ +
Sbjct: 152 PLGV---STGRLKDV--SGVIVVKASLLPVYKNINSVMRLFIIAGLIALVASVALALFLA 206

Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449
                             E   +M    +         +  N +     ++      +  
Sbjct: 207 RTLTRPIEQISEQTTKIAEGDYSMVNHIYGSDELSQLALSVNDLSTRIEESTET---VNA 263

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
           E  +L S+L   +DG+   NR G +   N+A +   G   ED L +     L       +
Sbjct: 264 ERNRLDSVLTHMADGVLAANRRGEVTIINQAAADFVGVNREDALGQDVVSLLRLEGKRTL 323

Query: 510 NHYLTEILSLDLR-QTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568
              L  +    +      K  L  T       + +I ++  F S   + +HDI+E ++  
Sbjct: 324 RDILENLNDFRVDLSDDSKELLVQT------YVSLIKRQSGFISGLVVVLHDITEQQRID 377

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
           ++                 F++ VSHE+RTPLT++  + + +               +  
Sbjct: 378 SERRM--------------FVSNVSHELRTPLTSVRSYVDALAEGAID--DPEMAQNFLG 421

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE------- 681
            +      ++ ++NDLL++S+++ G M +  E ++L+   +  ++   +           
Sbjct: 422 VVQDETQRMIRMINDLLELSRLDQGTMEVKLEVINLNSLFNFVLNRFDMILESDAKNENT 481

Query: 682 --KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
             K   I   F      +  D     Q+  NI++NA+ ++P GG I       +    IL
Sbjct: 482 ITKNYNILREFTKEDVWVEVDPDKFTQVLDNIMNNAVKYSPDGGTITARL-IKTKTRAIL 540

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            + D G+G+   +L+     F ++  S+     GTGLGL ++K +V+   G+ ++ S   
Sbjct: 541 SISDQGLGIPRKDLDNIFNRFFRVDKSRSRAQGGTGLGLAISKEVVEKFNGRIWVDSVEN 600

Query: 800 KGTLIEIIFPLYDTSHPHD 818
           KG+   I    Y    P D
Sbjct: 601 KGSTFYISL-AYVDEEPED 618


>gi|83816795|ref|YP_444479.1| two-component system sensor protein [Salinibacter ruber DSM 13855]
 gi|83758189|gb|ABC46302.1| two-component system sensor protein [Salinibacter ruber DSM 13855]
          Length = 1111

 Score =  310 bits (794), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 116/785 (14%), Positives = 258/785 (32%), Gaps = 87/785 (11%)

Query: 98   ISEELPKTIGNYAF-KMIGMRLCDVSDILHIDPNNHIGDLLKRQ-NTWYGKTTLWPIEGT 155
            + E+    +G          R        H +           +      +      +GT
Sbjct: 347  VGEKAASVLGLSPDPDGFYDRFVQCIPPEHRERYRASTKAAAAEHRPARMELPFERPDGT 406

Query: 156  NLYVPIDLAALPIYSRNREFSGFRGFGI-VHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214
               + +  +++P    N     F G  + +   R         +   +   H       H
Sbjct: 407  --RIWLLCSSMPERRENETL--FNGVLLDITDRREAEQAVQAERDRFETLFHNLPTPVVH 462

Query: 215  SSVEKEKYDIFSQQSPPP---------HLRMKNKVSSLTEYYAHK--DDVLKTEKYPLLT 263
               ++E +      +             +R K+  + +    A    D + +        
Sbjct: 463  GWSDEEGHLRVQTVNDTFESVFGIGEEQIRTKDLQAEIVPPDAQDEADSIRRWLLAGEPV 522

Query: 264  SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
              E      +      +    +    G  +  +     Y       +          L  
Sbjct: 523  DREVRRETSDGTRDFRVQVTLRDDGPGPTEGYAI----YTDITERKTKERELRTRGRLLK 578

Query: 324  ETVDKCPIPFFVYSHG--NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
            +  +      ++       + + + ++  +    +    +             +   +  
Sbjct: 579  QLRENITDVVWMSPADKSEIEFISDAYEEIWGRPTDQLHDHPNA-----VVEAIHPADRD 633

Query: 382  KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
            +      + R    A    + +         +         +        G+  +  + +
Sbjct: 634  RVQAALDTQRKDPDAYEETYRVVQPDGTVRWVRDRAAGVYGEDGRLERIIGVATDITERK 693

Query: 442  INKRKMEIEVMQLCSILEATSDGIAIINRE-----GI--ILSTNRAVSKLFGYPVEDILR 494
              ++ ++    ++ ++   TS    ++  E     G   +   N    ++FGYPV  +  
Sbjct: 694  RREQVLQARQDKVEALYTTTSQ---VLRAESTTAVGRSIVDLVN----EVFGYPVVIVRF 746

Query: 495  KPFTVFLEQNTPSVMNHYL--------------TEILSLDLRQTLEK------------- 527
            +     +       +  ++                          +              
Sbjct: 747  REDERLVPVQASPDVADHVPNPSSFDVTGESVVATAFRDGATALFDDLSAVGDSVDYGAV 806

Query: 528  ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS--------EWKQEKNKLSHAKKIAE 579
                        ++ +   +    + +   + +I         +  + + +L  AK+ AE
Sbjct: 807  RATAVVPIGTHGTISVAALEAGAIAGFDRRLIEILSTYAALVLDRIEYEGELVSAKEEAE 866

Query: 580  KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR--------YIEYANYID 631
            + +  KS FLA +SHEIRTPLT+IIGF+EVI ++    L +            ++A+ I+
Sbjct: 867  RLNRMKSAFLANMSHEIRTPLTSIIGFAEVIGDEATSLLEHSDSPPDAVTALDQFADLIE 926

Query: 632  RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
             SG+ +L+ ++ +L++S++E+G+M L   P++L + V+EA  L +  A  + I ++   A
Sbjct: 927  ESGHRLLETLDTVLNLSRLEAGEMELDCSPLNLADEVAEATDLFEPQALTEGIDLQGETA 986

Query: 692  NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751
                    D   ++    N++SNA+ +T  GG + +       ++V L V DTGVGM   
Sbjct: 987  EGPLWARVDEGGLRIALQNLISNALKYTEEGGTVRVRAGRR-GDDVALEVEDTGVGMDPD 1045

Query: 752  ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
             + +  +PF Q         EGTGLGL + K  ++   G   + +   +G+   +  P  
Sbjct: 1046 HVPELFEPFRQESEGTGRTYEGTGLGLAVTKQAIEQMGGTIAVETAKGEGSCFTVRVPAA 1105

Query: 812  DTSHP 816
            D   P
Sbjct: 1106 DAPDP 1110



 Score =  181 bits (459), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 60/520 (11%), Positives = 135/520 (25%), Gaps = 34/520 (6%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           DA G L   +  L +  G  A  +    + DV   L+ D        +   +    +   
Sbjct: 212 DADGQLLLANPRLCEMTGYDADTLTRRHMWDVDVSLNPDDARARWATMAPGDQHRREGRY 271

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
              EG+   V +DL  + +    R+F    G+      R +N  R    RL    + L  
Sbjct: 272 RRKEGSTFPVEVDLRCIAV-DGARQFV-ATGWDTTEHRRTENALREKEARLRGLANSLPG 329

Query: 210 IKKG--HSSVEKEKYDIFSQQSPPPHLRMKNKVS---SLTEYYAHKDDVLKTEKYPLLTS 264
           +          +  Y    +++        +         +    +             +
Sbjct: 330 VTYQFYVRPGGEWGYHFVGEKAASVLGLSPDPDGFYDRFVQCIPPEHRERYRASTKAAAA 389

Query: 265 EESSLPEQEDFHTINLNQYTK--KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
           E      +  F   +  +            +N +  +   L   +            +  
Sbjct: 390 EHRPARMELPFERPDGTRIWLLCSSMPERRENETLFNGVLLDITDRREAEQAVQAERDRF 449

Query: 323 PETVDKCPIPFFVYSHG-----NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
                  P P             +   N +F  +        I      +  L A  +  
Sbjct: 450 ETLFHNLPTPVVHGWSDEEGHLRVQTVNDTFESVFG------IGEEQIRTKDLQAEIVPP 503

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
           +   +   + R           +     +      +        +  P       I  + 
Sbjct: 504 DAQDEADSIRRWLLAGEPVDREVRRETSDGTRDFRVQ---VTLRDDGPGPTEGYAIYTDI 560

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAI--INREGIILSTNRAVSKLFGYPVEDILRK 495
            + +  +R++      L  + E  +D + +   ++   I   + A  +++G P + +   
Sbjct: 561 TERKTKERELRTRGRLLKQLRENITDVVWMSPADKS-EIEFISDAYEEIWGRPTDQLHDH 619

Query: 496 P--FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553
           P      +       +   L            E+       +  +  +R     +     
Sbjct: 620 PNAVVEAIHPADRDRVQAALDTQRKD--PDAYEETYRVVQPDGTVRWVRDRAAGVYGEDG 677

Query: 554 ----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
                     DI+E K+ +  L   +   E   +  S  L
Sbjct: 678 RLERIIGVATDITERKRREQVLQARQDKVEALYTTTSQVL 717



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/218 (12%), Positives = 65/218 (29%), Gaps = 16/218 (7%)

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHT-----IQWNRENSLAMTFIPFEKANQF----- 424
             D  A++       D      + RL T     +  +      + F+             
Sbjct: 107 RDDALALEDAPRQGWDGDPAYETFRLSTYLGAKVVADGALYGTLCFVDRAPRQAAFDESD 166

Query: 425 -PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
                       + ++ R  + +      +L ++ E   D I   + +G +L  N  + +
Sbjct: 167 AAALARLVQAVEQTLERRRPEARPRQTSARLEALFEEAPDMITFHDADGQLLLANPRLCE 226

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           + GY  + + R+          P         +   D  +   +      KE     + +
Sbjct: 227 MTGYDADTLTRRHMWDVDVSLNPDDARARWATMAPGDQHR---REGRYRRKEGSTFPVEV 283

Query: 544 II--KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579
            +    +  +  +  T  D +E ++ +N L   +    
Sbjct: 284 DLRCIAVDGARQFVATGWDTTEHRRTENALREKEARLR 321


>gi|302338211|ref|YP_003803417.1| multi-sensor signal transduction histidine kinase [Spirochaeta
           smaragdinae DSM 11293]
 gi|301635396|gb|ADK80823.1| multi-sensor signal transduction histidine kinase [Spirochaeta
           smaragdinae DSM 11293]
          Length = 603

 Score =  310 bits (794), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 99/588 (16%), Positives = 212/588 (36%), Gaps = 40/588 (6%)

Query: 235 RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294
           R++     L      ++  L+T+   +        P +  F   + + +        +  
Sbjct: 47  RLETAGELLLTALPFENGELETKAKEVTRKIGPDSPFRVTFIKPDGSVFADSHEDPLVME 106

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKY 354
           N     E        +  +                PI     + G +        L    
Sbjct: 107 NHAHRVEIRQAIRGEASFSLRKSPTLAISMLYYAFPI---DDAAGKVIAV---LRLSLPE 160

Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
            +V  +  A  LS  +    L        V + R        +  L  I  +        
Sbjct: 161 ANVKKLLAAAALSITIITALLLGLAVAAMVAVSRK------ITVPLAAISKSASAYARFD 214

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINK-RKMEIEVMQLCSILEATSDGIAIINREGI 473
           F      +   E +       +      ++  ++  +  +L ++L   ++ + +++R  +
Sbjct: 215 FSQPIHVDGPAEIVNTADALQKMAQALTSRIDEVTRQKQELEAVLTGMNEAVIVLDRNLV 274

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ------TLEK 527
           I   N A ++L     + ++ K     +     +        +++  +RQ         K
Sbjct: 275 ITEINPAAARLVSSSYDPVIGKSLIQVMRNTELNTFAQ--EALVARGVRQCSLVIPGEAK 332

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
                     + ++              L M+DI+  KQ +                + +
Sbjct: 333 EIHLQVNASTIEAVTADKNSRYPQQRLILVMNDITTLKQLE--------------RMRKE 378

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           F+A VSHE++TP+T+I GF E + +             +   +      + +I++DLL +
Sbjct: 379 FVANVSHELKTPITSIKGFVETLLDGAID--DRENAFRFLTIVQNQTTRLGNIIDDLLTL 436

Query: 648 SKIESGKMN--LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
           S++E       +  E + L   V+EAIS+ Q  A+EK I I       +  IL +   ++
Sbjct: 437 SRLEQNDEESGISMEKIPLCHPVNEAISICQGRADEKSIDIHVECDREL-EILGNGHLIE 495

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           Q  +N++ NA+ + P G  +++      +  ++L V+D G G+   + E+  + F ++  
Sbjct: 496 QAVVNLVDNAVKYCPEGSVVLVRCEREEDRRILLVVQDNGPGIPEADQERIFERFYRVEK 555

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
           ++     GTGLGL + K ++  + G   + S+  +G    + FP   +
Sbjct: 556 ARSRDMGGTGLGLAIVKHIMLLHGGTVALESSRGEGASFLLRFPALPS 603


>gi|255026540|ref|ZP_05298526.1| sensor protein ResE [Listeria monocytogenes FSL J2-003]
          Length = 350

 Score =  310 bits (794), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 80/378 (21%), Positives = 156/378 (41%), Gaps = 42/378 (11%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
             +  E  QL +IL   +DG+   + +  I+ +N    +                F    
Sbjct: 3   SALRQEKEQLSNILVGMADGVIKFSVDKTIILSNPPAEEFLH-----------NWFFSPE 51

Query: 505 TPSVMN------HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM 558
               +         L + L     Q  E        +   +++  ++            +
Sbjct: 52  NTEKVLIPVALNELLNDTLEKKESQVGEITF----ADHTYVAILTLLYTGEHVRSIVAVI 107

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            D++E KQ +                KSDF+  VSHE+RTP++ + G+SE I +      
Sbjct: 108 RDMTEEKQLE--------------KMKSDFVNNVSHELRTPISMLQGYSEAIIDGV--AQ 151

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
            +    E+A  I      +  +VND+LD++++E+G   +  + + L   + + IS   + 
Sbjct: 152 SDEEVREFAQIIYDESLRIGRLVNDMLDLARMEAGFNQMDNQKLPLAPLLRKVISNFDVL 211

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS---GGQIIIS-TTHTSN 734
           A E  + +             D   ++Q+ +N++ NAI  T      G++I+  T   + 
Sbjct: 212 AKENFVELGLELETPDLEYSYDPDRMEQVLINLIMNAIRHTGKEGYDGKVILKQTIDEAR 271

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGEGTGLGLPLAKAMVDANMGKFY 793
             +++ V D G G+   ++    + F ++  +++  +  GTG+GL + K +V+A+ GK  
Sbjct: 272 SNLVITVSDNGSGIAEEDIPYLFERFYKVDKARKRGKAVGTGIGLAIVKNIVEAHNGKIS 331

Query: 794 IFSTPAKGTLIEIIFPLY 811
           + S   KG+   I  PLY
Sbjct: 332 VESELGKGSDFIITLPLY 349


>gi|28901075|ref|NP_800730.1| sensor protein LuxQ [Vibrio parahaemolyticus RIMD 2210633]
 gi|260364054|ref|ZP_05776777.1| LuxQ, periplasmic family [Vibrio parahaemolyticus K5030]
 gi|260879926|ref|ZP_05892281.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio
           parahaemolyticus AN-5034]
 gi|260894602|ref|ZP_05903098.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio
           parahaemolyticus Peru-466]
 gi|50401015|sp|Q87GU5|LUXQ_VIBPA RecName: Full=Autoinducer 2 sensor kinase/phosphatase luxQ
 gi|28809588|dbj|BAC62563.1| sensor protein LuxQ [Vibrio parahaemolyticus RIMD 2210633]
 gi|308086409|gb|EFO36104.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio
           parahaemolyticus Peru-466]
 gi|308092294|gb|EFO41989.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio
           parahaemolyticus AN-5034]
 gi|308114073|gb|EFO51613.1| LuxQ, periplasmic family [Vibrio parahaemolyticus K5030]
          Length = 858

 Score =  310 bits (794), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 83/376 (22%), Positives = 163/376 (43%), Gaps = 23/376 (6%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            ++E +      +       I + +  G+++  N A  K      +     P     +  
Sbjct: 350 EELEAQKRSFRDLFNFALSPIMVWSEAGVLIQINPAARKELVIENDIETMHPVFKGFKDK 409

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISE 563
               +           +   +          +K+    +   ++    S   +   DI+ 
Sbjct: 410 LVPHLRMAAQGATLTGVNVPI---------GDKVFRWNLSPIRVDGDISGIIVQGQDITT 460

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + + + + A++ AEK +  ++DFLA++SHEIRTP+  I+G ++++K+     +     
Sbjct: 461 LIEAEKQSNLARREAEKSAQARADFLAKMSHEIRTPINGILGVAQLLKD----SVEAEEQ 516

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
               + +  SG  +L ++ND+LD SKIE GK N+   P S  + +    ++ +     K 
Sbjct: 517 KNQIDVLRHSGEHLLAVLNDILDFSKIEQGKFNIQKHPFSFADTMRTLENIYRPICENKG 576

Query: 684 ILIRTS--FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-----SNEE 736
           + +        N+  I  D   + QI  N++SNA+ FTPSG  + +           N  
Sbjct: 577 VELVIENQLDGNV-EIFTDQVRLNQILFNLVSNAVKFTPSG-CVRLHAELEQFYGADNSV 634

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           +++ + DTG+G+ + +L++  +PF Q   +      G+GLGL + K +VD   G   + S
Sbjct: 635 LVVEISDTGIGIESDKLDEMFEPFVQEEATTTREYGGSGLGLTIVKNLVDMLDGDVQVRS 694

Query: 797 TPAKGTLIEIIFPLYD 812
              +GT   +  P+ D
Sbjct: 695 QKGQGTTFVVTLPVKD 710


>gi|167772672|ref|ZP_02444725.1| hypothetical protein ANACOL_04053 [Anaerotruncus colihominis DSM
           17241]
 gi|167665150|gb|EDS09280.1| hypothetical protein ANACOL_04053 [Anaerotruncus colihominis DSM
           17241]
          Length = 566

 Score =  310 bits (794), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 78/377 (20%), Positives = 159/377 (42%), Gaps = 32/377 (8%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +   +++  E   + +I     +G+ +++ E  ILS N +   L          K     
Sbjct: 218 QEQVKRLREERDTINTITSNMKEGMVLLDLERGILSVNHSALMLLDAAEGVYEGKNILNL 277

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTM 558
                       L +     L        L   ++ +   +     +    +     + +
Sbjct: 278 SRSE-------LLGDCAGKALAGAAADAVL--ERDGRACHIFASPVRDAGGAICGAIVLL 328

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            D++E ++ +                + DF A VSHE++TPLT+I GF+E++  +     
Sbjct: 329 LDVTEQQRAEQV--------------RRDFAANVSHELKTPLTSISGFAEMM--ENGMAD 372

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
            +     +A  I      ++ + +D++ +S+IE   +     PV L      A+  ++  
Sbjct: 373 NSQDVRRFAGRIYTQAQRLIALTDDIIRLSRIERADLT-ENVPVELRALCDRAVETLRFT 431

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738
           A +K++ I  +       +  D + + ++  N++ NA+ +   GG++ +S +      V 
Sbjct: 432 AEQKQVEI--AVTGGPAPVRGDRQMLDELITNLMDNAVKYNRPGGRVDVSLSVQD-GLVC 488

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           LRV DTG+G+     E+  + F ++  S+  +  GTGLGL + K +V+ + G   + S P
Sbjct: 489 LRVADTGIGIPKEHQERIFERFYRVDQSRSKQTGGTGLGLSIVKHVVERHGGSITLESVP 548

Query: 799 AKGTLIEIIFPLYDTSH 815
            +GT + +  P  DT H
Sbjct: 549 GEGTAVTVRLP-ADTGH 564


>gi|160885983|ref|ZP_02066986.1| hypothetical protein BACOVA_03989 [Bacteroides ovatus ATCC 8483]
 gi|156108796|gb|EDO10541.1| hypothetical protein BACOVA_03989 [Bacteroides ovatus ATCC 8483]
          Length = 808

 Score =  310 bits (794), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 108/562 (19%), Positives = 189/562 (33%), Gaps = 33/562 (5%)

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
                  E  L  +   + + LN         T     +      +   +          
Sbjct: 120 REWCRVNERELNMESISYRVRLNGEIFYMRIQTYLREERPDGS-FNIEGYIQNITDIQHR 178

Query: 319 ENLTPETVDKCPIP---FFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
            N                F     G + +AN  FL        +DI      +    A  
Sbjct: 179 RNDINTLTHAINNAKESIFAARPDGTIIFANRRFLHNHGIPESEDISQLKIYN---VAAD 235

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
           +    A                 A   +       +   T       +            
Sbjct: 236 MPTQEAWDERCKDVIHGGSSNFVAHHPSKINKGILAYEGTMYNVTNDSGEESYWSFA--- 292

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAI--INREGIILSTNRAVSKLFGYPVEDI 492
            +  +    + +++     + + +     GI +  IN +   +  NR           D 
Sbjct: 293 HDISERIRYEAQIKRLNQIMDTTINNLPAGIVVKEINNDFRYIYRNREAYNR-DLYKNDP 351

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS- 551
           + K    F              ++ +      +     G  +   L+ L     ++    
Sbjct: 352 VGKNDFDFYPPIVAEKKRQEDIQVATSGK--GMHWTVEGKDRNGNLIILDKRKIRVDGDE 409

Query: 552 ---SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                      D++E +  K +L  +K+ AE   S KS FLA +SHEIRTPL AI+GFS 
Sbjct: 410 LSSPIIVSIEWDVTELEMMKRELLSSKEKAEMSDSLKSAFLANMSHEIRTPLNAIVGFSH 469

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
           +I               Y N ++ +   +L ++N++LD+SKIESG +   F P SL    
Sbjct: 470 LIAESD----DAEERKTYYNIVNANNERLLQLINEILDLSKIESGTIEFSFGPASLHNLC 525

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
            E          +  + +    ++    I  D   V Q+  N++ NA+ FT  G    IS
Sbjct: 526 REVYDAHIFRTPQ-GVSLVYESSDESLMIETDKNRVFQVISNLIGNAVKFTKEGS---IS 581

Query: 729 TTHT-SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
             +   + +++  V DTG G+   ++ +  + F ++ N      +GTGLGL + K++V+ 
Sbjct: 582 YGYKLVDNQIVFHVTDTGTGIEPEKVGRVFERFAKLNN----HAQGTGLGLSICKSIVER 637

Query: 788 NMGKFYIFSTPAKGTLIEIIFP 809
             GK  + S   KGT      P
Sbjct: 638 LGGKISVSSEFGKGTTFTFTLP 659



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/285 (11%), Positives = 83/285 (29%), Gaps = 26/285 (9%)

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSV--D 358
           +Y       ++    ++             I  + Y+       N +      Y  V  +
Sbjct: 43  QYRDITQRSNVKRRLEQANLTLRAIQKVAQIGQWAYNT------NQNIFHYLGYTGVLCE 96

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA--MTFI 416
           +      +   ++     D  + +     R +   +   +  + ++ N E       T++
Sbjct: 97  ESVQNLAIEKYVELIVEEDRQSFREWC--RVNERELNMESISYRVRLNGEIFYMRIQTYL 154

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476
             E+ +             +    R        ++  L   +    + I     +G I+ 
Sbjct: 155 REERPDGSFNIEGYIQNITDIQHRR-------NDINTLTHAINNAKESIFAARPDGTIIF 207

Query: 477 TNRAVSKLFGYPVEDILRK--PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
            NR      G P  + + +   + V  +  T    +    +++       +        K
Sbjct: 208 ANRRFLHNHGIPESEDISQLKIYNVAADMPTQEAWDERCKDVIHGGSSNFVAHHPSKINK 267

Query: 535 EEKLLSLRIIIKKLPFSSC---YSLTMHDISEWKQEKNKLSHAKK 576
              +L+    +  +   S    Y    HDISE  + + ++    +
Sbjct: 268 --GILAYEGTMYNVTNDSGEESYWSFAHDISERIRYEAQIKRLNQ 310


>gi|110637539|ref|YP_677746.1| PAS/PAC sensor signal transduction histidine kinase [Cytophaga
           hutchinsonii ATCC 33406]
 gi|110280220|gb|ABG58406.1| PAS/PAC sensor signal transduction histidine kinase [Cytophaga
           hutchinsonii ATCC 33406]
          Length = 373

 Score =  310 bits (794), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 89/363 (24%), Positives = 165/363 (45%), Gaps = 13/363 (3%)

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
             +  +I++   DGI  I+  GII S N +  K+FGY   +++ +   + + +      +
Sbjct: 19  ESRYQAIIDNAVDGIITIDDRGIIESVNPSAIKMFGYASTELIGQNIKILMPEPDRGNHD 78

Query: 511 HYLTEILSLDLRQTL--EKITLGSTKEEKLLSLRIIIKK--LPFSSCYSLTMHDISEWKQ 566
            Y+         + +   +  +G  K   +    + I +  L     ++  +HDISE ++
Sbjct: 79  KYIGTYHETGKGKIIGKGREVIGKRKNGTMFPFLLSISEVILENKKIFTGIIHDISELRE 138

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
            K  L+  + +    S  KS F+   SHE RTPL+ I+     + ++   P    + +++
Sbjct: 139 VKEALAKERDL----SELKSRFVTMASHEFRTPLSTILSSV-SLISRYNDPKDEDKRLKH 193

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
            N I  S N +  I+ND L +S++E G +       S+ E + E +  +     E ++ I
Sbjct: 194 VNRIKSSVNNLTSILNDFLSLSRLEEGMVLNDPIEFSIQELLYEVVDEMNSILKEGQV-I 252

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
             S  N I ++  D   V+ I +N++SNAI ++  G +I I T  T    + + + D G+
Sbjct: 253 SISKENEIQKVFLDKNLVRNIMINLVSNAIKYSGEGQEIRIQTAATEQ-VLSITIIDEGI 311

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+   +       F +  N+      GTGLGL + K  +D   G+    S  ++GT   +
Sbjct: 312 GIPEEDQSYLFSRFFRAHNATN--IPGTGLGLNIVKKYLDLLRGRIEFTSKQSQGTTFIV 369

Query: 807 IFP 809
             P
Sbjct: 370 QIP 372


>gi|27466937|ref|NP_763574.1| two-component sensor histidine kinase [Staphylococcus epidermidis
           ATCC 12228]
 gi|57865895|ref|YP_190074.1| sensory box histidine kinase YycG [Staphylococcus epidermidis
           RP62A]
 gi|242243237|ref|ZP_04797682.1| two-component sensor histidine kinase [Staphylococcus epidermidis
           W23144]
 gi|251811383|ref|ZP_04825856.1| two-component sensor histidine kinase [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|282874740|ref|ZP_06283619.1| PAS domain S-box [Staphylococcus epidermidis SK135]
 gi|293367562|ref|ZP_06614215.1| sensor histidine kinase YycG [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|81672854|sp|Q5HK19|WALK_STAEQ RecName: Full=Sensor protein kinase walK
 gi|81844243|sp|Q8CU87|WALK_STAES RecName: Full=Sensor protein kinase walK
 gi|27314479|gb|AAO03616.1|AE016744_19 two-component sensor histidine kinase [Staphylococcus epidermidis
           ATCC 12228]
 gi|57636553|gb|AAW53341.1| sensory box histidine kinase YycG [Staphylococcus epidermidis
           RP62A]
 gi|58003339|gb|AAW62232.1| two-component sensor histidine kinase [Staphylococcus epidermidis]
 gi|242233186|gb|EES35498.1| two-component sensor histidine kinase [Staphylococcus epidermidis
           W23144]
 gi|251805132|gb|EES57789.1| two-component sensor histidine kinase [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|281296456|gb|EFA88971.1| PAS domain S-box [Staphylococcus epidermidis SK135]
 gi|291318275|gb|EFE58668.1| sensor histidine kinase YycG [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|319399898|gb|EFV88144.1| sensory box histidine kinase YycG [Staphylococcus epidermidis
           FRI909]
 gi|329728493|gb|EGG64929.1| sensor protein kinase WalK [Staphylococcus epidermidis VCU144]
 gi|329736055|gb|EGG72328.1| sensor protein kinase WalK [Staphylococcus epidermidis VCU045]
          Length = 610

 Score =  310 bits (794), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 76/387 (19%), Positives = 168/387 (43%), Gaps = 27/387 (6%)

Query: 426 ENMPQNGIEPEDVDTRINKRKM--EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           + + +  +   ++  R+ + +   E E  +L S++   SDGI   +R G +   N    K
Sbjct: 237 DEIGELALAFNNLSKRVQEAQANTESEKRRLDSVITHMSDGILATDRRGRVRIANDMALK 296

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           + G   ED++       L       +        S  L    E+  +        ++   
Sbjct: 297 MLGLAKEDVIGYYMLGVLNLENEFSLEEIQENSDSFLLDINEEEGIIAR------VNFST 350

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
           I+++  F + Y   +HD++E +Q + +              + +F+A VSHE+RTPLT++
Sbjct: 351 IVQETGFVTGYIAVLHDVTEQQQVERE--------------RREFVANVSHELRTPLTSM 396

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
             + E ++   +          + +        ++ +VNDLL +SK+++    +  E + 
Sbjct: 397 NSYIEALEEGAWQ--DKELAPSFLSVTREETERMIRLVNDLLQLSKMDNESDQITKEIID 454

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
            +  +++ I+  +     K                 D   + Q+  N+++NA+ ++    
Sbjct: 455 FNMFINKIIN--RHEMAAKDTTFVREIPQQTIFAEIDPDKMTQVFDNVITNAMKYSRGEK 512

Query: 724 QIIISTTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
           ++       +    + +R++D G+G+   +++K    F ++  ++  +  GTGLGL ++K
Sbjct: 513 RVEFHVKQNALYNRMTIRIKDNGIGIPINKVDKIFDRFYRVDKARTRKMGGTGLGLAISK 572

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFP 809
            +V+A+ G+ +  S   +GT I I  P
Sbjct: 573 EIVEAHNGRIWANSVEGQGTSIFITLP 599


>gi|171056902|ref|YP_001789251.1| PAS/PAC sensor signal transduction histidine kinase [Leptothrix
           cholodnii SP-6]
 gi|170774347|gb|ACB32486.1| PAS/PAC sensor signal transduction histidine kinase [Leptothrix
           cholodnii SP-6]
          Length = 671

 Score =  310 bits (794), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 100/666 (15%), Positives = 217/666 (32%), Gaps = 59/666 (8%)

Query: 198 KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257
           ++   + S +       +++                      V     + A         
Sbjct: 4   RQAIGRASVVRRYGSATAAIAAVVGLRVLLAPSLGDQAQFAPVLCAVVFAAWHGGFGPAL 63

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD- 316
              L  +  +     E   ++ ++    +Q    +   S      L    H +     + 
Sbjct: 64  FAVLFGALATRYFVLEPIGSLAIDGR-DQQVGLAVYLLSGLGIAALGGSMHKAERRANEV 122

Query: 317 -EGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIE---------IAGG 365
            E   L    ++    P   +   G + + N +   L  Y   D +             G
Sbjct: 123 AEQLKLKGALIENALEPVLGWDWDGRITFWNRAAQRLYGYSRDDALGCTSHELLRTRVHG 182

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
                     +D      +     D   I    R+  +  +  ++  +       A    
Sbjct: 183 QGGAFMDRLAADGAFEGELRQRTRDGREIVVETRMVRVMRDDGSAYVIEANRDVTARTEA 242

Query: 426 ENMPQNGIEPEDVDTRINKRKM-------EIEVMQLCSILEATSDGIAIINREGIILSTN 478
           +   Q      +   R     +            +L SI+++  D I  ++    I+  N
Sbjct: 243 QAAMQQLNAELESRVRERTDALSRNNELLAASRARLASIVDSAMDAIVTLDGRQQIVLFN 302

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD--------LRQTLEKITL 530
            A  ++FG      L +P    +          ++    +                   L
Sbjct: 303 AAAERMFGLSAAQALGQPLERLIPPRFRGGHPAHVDGFDARGDSAAVRSMRATPSGGELL 362

Query: 531 GSTKEEKLLSLRIIIKK--LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE------S 582
           G   +     +   I +  +     +++ + DI+E  + +      +   E+       S
Sbjct: 363 GLRADGTEFPVEASISRTDVNGDKLFTVILRDITERSRAEEAAVRLRIAEEQAVIAQRDS 422

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
             KS+FLA +SHE+RTPL AI+GF++++  +  GPL   +  +   +I   G+  L ++ 
Sbjct: 423 RMKSEFLASMSHELRTPLNAILGFTDLLLMKGAGPLTPDQEKK-LRHIHAGGSRQLSLIG 481

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702
           DLLD+++IE+G+  +    V   + + + +  +Q     K + +      +I  + +D  
Sbjct: 482 DLLDLARIEAGRFPVSIAQVVCTDVIQKVVRGLQPAVASKGLQLTADVPGSIEAVRSDAV 541

Query: 703 SVKQIALNILSNAIHFTPSGGQIIIST-THTSNEEVI---LRVRDTGVGMTNYELEKAMK 758
            + +I   +  NA+ FT +G ++ +S   H     V+   + V DTG G+   + +K   
Sbjct: 542 VLAKIVRLLADNAVKFTEAG-RVTLSVHQHREGAGVLVTGISVSDTGPGIRPEDQDKLFL 600

Query: 759 PFGQIPNSQQIR--------GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            F Q   +   +                  +  +      +    S   +G++  +    
Sbjct: 601 AFIQGDGASTRQHGGLGLGLHL--------SNKLAGLIGAQIEFRSEFGQGSVFTLRL-A 651

Query: 811 YDTSHP 816
            D + P
Sbjct: 652 QDEAAP 657



 Score = 60.0 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/250 (9%), Positives = 51/250 (20%), Gaps = 12/250 (4%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D  G +   +    +  G      +G    ++             D L     + G+   
Sbjct: 144 DWDGRITFWNRAAQRLYGYSRDDALGCTSHELLRTRVHGQGGAFMDRLAADGAFEGELRQ 203

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
              +G  + V             R     R  G  +V   + D  A  +          E
Sbjct: 204 RTRDGREIVV-----------ETRMVRVMRDDGSAYVIEANRDVTARTEAQAAMQQLNAE 252

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
           ++                       R+ + V S  +     D   +   +         L
Sbjct: 253 LESRVRERTDALSRNNEL-LAASRARLASIVDSAMDAIVTLDGRQQIVLFNAAAERMFGL 311

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
              +            +   G   +         S       +               + 
Sbjct: 312 SAAQALGQPLERLIPPRFRGGHPAHVDGFDARGDSAAVRSMRATPSGGELLGLRADGTEF 371

Query: 330 PIPFFVYSHG 339
           P+   +    
Sbjct: 372 PVEASISRTD 381



 Score = 48.5 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/304 (8%), Positives = 73/304 (24%), Gaps = 19/304 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV----------SDILHIDPNNHIGDLLK 138
           +D    +   +    +  G  A + +G  L  +          + +   D       +  
Sbjct: 292 LDGRQQIVLFNAAAERMFGLSAAQALGQPLERLIPPRFRGGHPAHVDGFDARGDSAAVRS 351

Query: 139 RQNTWYGKTTL-WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIV-HVNRVDNDPRAL 196
            + T  G   L    +GT    P++ +         + +G + F ++       +     
Sbjct: 352 MRATPSGGELLGLRADGT--EFPVEASISRT-----DVNGDKLFTVILRDITERSRAEEA 404

Query: 197 GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256
             RL          ++      +    +  +   P +  +      L +         + 
Sbjct: 405 AVRLRIAEEQAVIAQRDSRMKSEFLASMSHELRTPLNAILGFTDLLLMKGAGPLTPDQEK 464

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
           +   +       L    D   +   +  +          +    + +        S    
Sbjct: 465 KLRHIHAGGSRQLSLIGDLLDLARIEAGRFPVSIAQVVCTDVIQKVVRGLQPAVASKGLQ 524

Query: 317 EGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
              ++             +     L   N          ++   +   G   L+    +S
Sbjct: 525 LTADVPGSIEAVRSDAVVLAKIVRLLADNAVKFTEAGRVTLSVHQHREGAGVLVTGISVS 584

Query: 377 DNNA 380
           D   
Sbjct: 585 DTGP 588


>gi|88797263|ref|ZP_01112853.1| probable sensor/response regulator hybrid [Reinekea sp. MED297]
 gi|88780132|gb|EAR11317.1| probable sensor/response regulator hybrid [Reinekea sp. MED297]
          Length = 656

 Score =  310 bits (794), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 85/369 (23%), Positives = 159/369 (43%), Gaps = 14/369 (3%)

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGY--PVEDILRKPFTVFLEQNTPSVMNH 511
           L   ++A S G    +        +    K+FG     + I    +   +          
Sbjct: 40  LQKAIQAASAGTFFYSTRSNETYWDENSLKMFGLAGQGQIIPPGTWERLIHPLDREKALS 99

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQE 567
            +   L     Q    +        ++  ++     +          +    +I+   + 
Sbjct: 100 EIFNAL-NGKGQLFTHVYRILLPGGEIRWIKGTGFVVRNDQGDPLEITGFHFNITGQIRA 158

Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
           + KL  ++  A +    K+ FLA +SHEIRTP+ AIIG  E+++++      N     Y 
Sbjct: 159 EQKLKDSEARARQAMEAKATFLANMSHEIRTPMNAIIGMIELLQHED----PNQTQKRYL 214

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
             +  S N+++ I++D+LD+SKIE+GK++L  +P  + + + + +S+    +N K IL+ 
Sbjct: 215 ATLRNSSNVLMRIIDDILDVSKIEAGKLSLEKKPFPVRQVLHQCLSVYTQISNRKNILLT 274

Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN-EEVILRVRDTG 745
                 +P +I  D   ++Q+ +N++SNA  FT  G  I++    T   + +   V D+G
Sbjct: 275 GRVDAAVPIQIQGDSSRLQQVLMNLISNAFKFTDQG-HILVRVECTEQKDRLRFSVEDSG 333

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           VG+         + F Q+  S      GTGLGL + + +V+   G  +I S    G    
Sbjct: 334 VGIAEEAQASLFERFNQVDQSASRSSGGTGLGLAIVREIVELWGGDVWIRSRSGHGATFF 393

Query: 806 IIFPLYDTS 814
              P+  +S
Sbjct: 394 FDIPVQQSS 402


>gi|134045335|ref|YP_001096821.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus maripaludis C5]
 gi|132662960|gb|ABO34606.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus maripaludis C5]
          Length = 639

 Score =  310 bits (794), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 79/322 (24%), Positives = 159/322 (49%), Gaps = 11/322 (3%)

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
           ++     + +       +   L ++         E+++ G   ++ ++       +L  +
Sbjct: 323 LIGLFIALLVSYLINRGIIKPLEQLKQGA-----ERLSNGRYDQKVIVDSDDEFGELAKA 377

Query: 552 SCYSLTMHDISE--WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                T  +IS+   K+   +L  +    ++  + KS+ +A VSHE+RTPLT+I G+ E+
Sbjct: 378 FNKMATQINISDEKLKKHAEELKASYNELKELDNLKSELIAIVSHELRTPLTSIKGYVEL 437

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           + +   G + N    +     D +   +  ++  +LD+SKIE G++ ++ E V++ E V 
Sbjct: 438 VLDGTMGAI-NDSQRKCLQVADDNIVRLRRLIESMLDLSKIERGELEMYREKVNICEIVG 496

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
           + I  ++  A EK I +  +       + AD   + Q+  N++ NAI F+P+   I+++ 
Sbjct: 497 DVIQYLKPLATEKNIKLNKNVEK--ITLEADKDRITQVLTNLIENAIKFSPANESILVNG 554

Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
           T      + L+V D G G+   ++EK    F Q+ +S + +  G+GLGL + K++V+A+ 
Sbjct: 555 TLEDEG-LHLKVTDHGAGIPKKDMEKVFDRFYQVDSSTKRKKGGSGLGLAVCKSIVEAHG 613

Query: 790 GKFYIFSTPAKGTLIEIIFPLY 811
           G  ++ S   KG+   II P+ 
Sbjct: 614 GSIWVESELGKGSTFHIILPIS 635


>gi|212711105|ref|ZP_03319233.1| hypothetical protein PROVALCAL_02174 [Providencia alcalifaciens DSM
           30120]
 gi|212686273|gb|EEB45801.1| hypothetical protein PROVALCAL_02174 [Providencia alcalifaciens DSM
           30120]
          Length = 781

 Score =  310 bits (794), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 93/484 (19%), Positives = 195/484 (40%), Gaps = 22/484 (4%)

Query: 329 CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388
             +   ++  G +       L +        I     +  L    +  + +  +   +  
Sbjct: 38  MQMAVAIFLRGQVDS-----LDMVGSIFFGLIITPLAVYFLSVVVEQLEESRQRLTRMVD 92

Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
                    + L+T Q           I   +  +         ++ E       + + E
Sbjct: 93  KLEVMRKRDSELNT-QLQGNIEQLNLEILEREKAESAHLELLEQLKQEMKYREQTQIEFE 151

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
            + + L S L+A+ D +   N        NRA+  L G   + ++        ++   + 
Sbjct: 152 QQSVLLRSFLDASPDLVYYRNENNEFSGCNRAMELLTGKSEKQLVGLTPLDIYDEEIAAK 211

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII--KKLPFSSCYSLTMHDISEWKQ 566
           +     ++   ++  T E+  +     +    LR +    ++           DI+E K+
Sbjct: 212 VMETDEKVFRHNVALTYEQWLVYPDGRKACFELRKVPFYDRVGKRHGLMGFGRDITERKR 271

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
            +  L +        S  K+ F++ +SHE+RTPL  I+G S ++ + +           Y
Sbjct: 272 YQEALEN-------ASREKTTFISTISHELRTPLNGIVGLSRILLDTKLTK----EQSSY 320

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
              I  S   + +I ND++++ KIE  K+ L  +PV L E V++  +L  L    K +  
Sbjct: 321 LKTIHVSAVTLGNIFNDVIEMDKIERRKVQLDNQPVMLPEFVNDLENLSGLLVQPKGLKF 380

Query: 687 RTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
               A+ +P  IL D   ++QI  N++ NA+ FT  G ++ +S    ++ ++I +V+D+G
Sbjct: 381 VMDVAHGLPKTILTDGTRLRQILWNLIGNAVKFTQKG-EVKLSIWREADNKLIFQVKDSG 439

Query: 746 VGMTNYELEKAMKPFGQI-PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           +G+   EL+K    + Q+  ++      GTG+GL +++ +  +  G   + S   +G+  
Sbjct: 440 IGIPKDELDKIFAMYYQVRDSAGGRPATGTGIGLSVSRRLAQSMGGDIRVESDIGQGSTF 499

Query: 805 EIIF 808
            +  
Sbjct: 500 TLSI 503



 Score = 41.2 bits (95), Expect = 0.79,   Method: Composition-based stats.
 Identities = 13/156 (8%), Positives = 37/156 (23%), Gaps = 8/156 (5%)

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
                  F++   L    +D  P   +    +      N +  LLT       + +    
Sbjct: 143 REQTQIEFEQQSVLLRSFLDASPDLVYYRNENNEFSGCNRAMELLTGKSEKQLVGLTPL- 201

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
             + D    +        +          A      + +                ++  +
Sbjct: 202 -DIYDEEIAAKVMETDEKVFRH-----NVALTYEQWLVYPDGRKACFELRKVPFYDRVGK 255

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
                G   +  + +  +  +E    +  + +   S
Sbjct: 256 RHGLMGFGRDITERKRYQEALENASREKTTFISTIS 291



 Score = 39.6 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 13/128 (10%), Positives = 31/128 (24%), Gaps = 13/128 (10%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT-----L 149
               +  +    G    +++G         L I        +++     +          
Sbjct: 177 FSGCNRAMELLTGKSEKQLVG------LTPLDIYDEEIAAKVMETDEKVFRHNVALTYEQ 230

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
           W +         +L  +P Y R  +  G  GFG           +   +   ++ +    
Sbjct: 231 WLVYPDGRKACFELRKVPFYDRVGKRHGLMGFG--RDITERKRYQEALENASREKTTFIS 288

Query: 210 IKKGHSSV 217
                   
Sbjct: 289 TISHELRT 296


>gi|220929523|ref|YP_002506432.1| histidine kinase [Clostridium cellulolyticum H10]
 gi|219999851|gb|ACL76452.1| histidine kinase [Clostridium cellulolyticum H10]
          Length = 598

 Score =  310 bits (794), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 80/361 (22%), Positives = 167/361 (46%), Gaps = 26/361 (7%)

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYP-VEDILRKPFTVFLEQNTPSVMNHYLT 514
           +++ +  +GI  I+    I+  N     +FG      I+ K     ++    S +N  L 
Sbjct: 258 TVINSMMNGIIAIDNNSKIIIINTTACDIFGVQYGPGIIGKNL---IDITRNSKVNSLLR 314

Query: 515 EILSLDLRQTLEKITLGSTKE-EKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKN 569
           + +  D+    E +    +   +K+  +     K   +        +T++DI+  ++ + 
Sbjct: 315 QTIRNDISLIDEIVIFSPSLGIDKIYRIYTNTIKSSDTRQQTAGAVITLNDITSVRKLE- 373

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
                          +++F++ V+HE++TPLT+I GF E +KN           +++ + 
Sbjct: 374 -------------QIRTEFVSNVTHELKTPLTSIRGFVETLKNGAIEDTTVA--VKFLDI 418

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           ID     +  ++ND L +S+IE+ + +     + L + + E + +++  A++K I +   
Sbjct: 419 IDIEAERLYMLINDTLQLSEIEAMRKDDSVMKIDLIQIIDEVVLILKSSADKKNIALEVL 478

Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749
             +    ++A+   +KQ+ +N++ NAI +    G+I I  +  +N   ++ V+DTG+G+ 
Sbjct: 479 ANSAEVPVIANRNRIKQMLINLIDNAIKYNVENGKIYIK-SEKANGNTVISVKDTGIGIP 537

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
                +  + F ++   +     GTGLGL + K +V+   G   I S P KGT   +  P
Sbjct: 538 EKHHSRIFERFYRVDKGRSRNMGGTGLGLSIVKHIVNLYSGDINIISEPGKGTEFIVKLP 597

Query: 810 L 810
           L
Sbjct: 598 L 598


>gi|238794689|ref|ZP_04638294.1| Signal transduction histidine-protein kinase atoS [Yersinia
           intermedia ATCC 29909]
 gi|238725995|gb|EEQ17544.1| Signal transduction histidine-protein kinase atoS [Yersinia
           intermedia ATCC 29909]
          Length = 634

 Score =  310 bits (794), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 93/374 (24%), Positives = 172/374 (45%), Gaps = 28/374 (7%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           R +         ILE+ +DG+  ++  G +   N A   + GY  ++++ KP+    E+ 
Sbjct: 281 RALRETKTLNELILESAADGVISVDTNGRVTMINPAGELITGYSRKELMGKPYAEVFEKI 340

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHD 560
             +     L  +        LE    G     + + L I   +L  +            D
Sbjct: 341 DFNS--PVLDTLFRGIKHVALEIDYPGKK---RTIQLSISTSQLHNAQGDTLGALAIFTD 395

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           ++  K+ + ++  A+++A        + +A V+HE+R PLTAI GF +++K+       +
Sbjct: 396 LTARKEVQRRIEQAERLAT-----LGELMAGVAHEVRNPLTAISGFVQILKD----SEKD 446

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
           P+ +EY + I +    +  ++  LLD S+   G+    +  V+L++ + E++ LV+    
Sbjct: 447 PQRLEYTHIILKEVQSINRVIQQLLDFSRPRIGR----YHQVNLNQILRESLILVKTKGV 502

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
           E R+        ++  I AD   +KQ+ LNIL NA+    + G+I IST         + 
Sbjct: 503 EARVDFHVQLDESLCDIEADGELLKQVLLNILINAVQSIAARGEITISTKKRDEHHQQIT 562

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           ++D G G+T+    K   PF     S      GTGLGL +++ ++ ++ G+  + S P K
Sbjct: 563 IKDNGCGITDDIKSKVFDPFYTTKPS------GTGLGLSISQRIITSHDGEIRLESQPNK 616

Query: 801 GTLIEIIFPLYDTS 814
           GT   II P+   +
Sbjct: 617 GTTFIIILPVKHGA 630



 Score = 48.5 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/198 (12%), Positives = 61/198 (30%), Gaps = 9/198 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D +G +  I+       G    +++G    +V + +  +    + D L R         
Sbjct: 304 VDTNGRVTMINPAGELITGYSRKELMGKPYAEVFEKIDFNSP--VLDTLFRGIKHVALEI 361

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
            +P  G    + + ++   +++   +  G     I        + +   ++ ++  +   
Sbjct: 362 DYP--GKKRTIQLSISTSQLHNAQGDTLGA--LAIFTDLTARKEVQRRIEQAERLATLGE 417

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
            +      V      I              +    T     +   +      LL     S
Sbjct: 418 LMAGVAHEVRNPLTAISGFVQILKDSEKDPQRLEYTHIILKEVQSINRVIQQLLDF---S 474

Query: 269 LPEQEDFHTINLNQYTKK 286
            P    +H +NLNQ  ++
Sbjct: 475 RPRIGRYHQVNLNQILRE 492



 Score = 41.6 bits (96), Expect = 0.54,   Method: Composition-based stats.
 Identities = 21/154 (13%), Positives = 52/154 (33%), Gaps = 12/154 (7%)

Query: 310 SLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
           +LS    E + L    ++        V ++G +   NP+  L+T Y   + +        
Sbjct: 278 ALSRALRETKTLNELILESAADGVISVDTNGRVTMINPAGELITGYSRKELMGKPYA--E 335

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
           + +    +           +     I    +  TIQ        ++    +  N   + +
Sbjct: 336 VFEKIDFNSPVLDTLFRGIKHVALEIDYPGKKRTIQ--------LSISTSQLHNAQGDTL 387

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
               I  +    +  +R++E +  +L ++ E  +
Sbjct: 388 GALAIFTDLTARKEVQRRIE-QAERLATLGELMA 420


>gi|158337336|ref|YP_001518511.1| two-component sensor histidine kinase [Acaryochloris marina
           MBIC11017]
 gi|158307577|gb|ABW29194.1| two-component sensor histidine kinase [Acaryochloris marina
           MBIC11017]
          Length = 638

 Score =  310 bits (794), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 82/398 (20%), Positives = 167/398 (41%), Gaps = 23/398 (5%)

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINK--RKMEIEVMQLCSILEATSDGIAIINREGI 473
           +      +  E +       E ++    +   ++  +  +L +++   +DG  +++ +  
Sbjct: 235 VDLPFGGELGELIFSFNDMAERLERYQEQNIEELTAQKAKLETLVSTIADGAVLLDTDLA 294

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
           ++  N    +LF +   +++ K     L +     +   L +  +            G T
Sbjct: 295 VILANPTARRLFNWDS-EVVSKNVLNHLPEPVQIELTRPLYQSAAGQEGSEFRITLTGPT 353

Query: 534 KEEKLLSLRIIIKKLPF-SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
                + L  ++ +        ++T+ DI+                 + +  KS F++ +
Sbjct: 354 PRTVRILLTTVLDQQREKVKGIAMTVQDITR--------------EVELNEAKSQFISNI 399

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHE+RTPL  I  F E + +     L      E+ +  +R  + +  +VND+LD+S++ES
Sbjct: 400 SHELRTPLFNIKSFIETLHD-YGDDLSAEDRQEFLDTANRETDRLTRLVNDVLDLSRLES 458

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712
           GK    FE V L + V + +   QL A ++ I +      N+  I  +   + Q+  N++
Sbjct: 459 GK-QYRFEAVDLLQPVEQTLRTYQLTARDQGIELSHDIQANLSPIWGNYDLLLQVLTNLI 517

Query: 713 SNAIHFTPSGGQIIIST--THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
            NA+ FT  GG+++I          +V + V DTG+G+   +       F ++ N +   
Sbjct: 518 GNALKFTLKGGKVMIRAYPLAEHTNQVRVEVADTGIGIEPDDQAAIFDRFYRVEN-RVHT 576

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            EGTGLGL + + ++D +     + S    GT      
Sbjct: 577 LEGTGLGLSIVRNILDKHHASVNLISESGVGTTFWFDL 614


>gi|150017029|ref|YP_001309283.1| multi-sensor hybrid histidine kinase [Clostridium beijerinckii
           NCIMB 8052]
 gi|149903494|gb|ABR34327.1| multi-sensor hybrid histidine kinase [Clostridium beijerinckii
           NCIMB 8052]
          Length = 1083

 Score =  310 bits (794), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 85/248 (34%), Positives = 128/248 (51%), Gaps = 8/248 (3%)

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           K+  N+L  AK+ AE  +  KS FLA +SHEIRTPL  I+GF  +++        +    
Sbjct: 427 KERTNELIIAKEAAEDANMAKSQFLANMSHEIRTPLNGIVGFLSILEKTDL----DSTQQ 482

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           +Y   I  S   +L ++ND+LDISKIE+G+M +      +   +   I L    A EK +
Sbjct: 483 DYIETIQTSSETLLVVINDILDISKIEAGRMEIEKVAFDIRSVIESTIFLYDAKAREKGL 542

Query: 685 LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVI--LR 740
            +     + IP  ++ D   ++QI  N++SNA+ FT +G   I +S    +N EV     
Sbjct: 543 ELNMLINSAIPSCLVGDPTKIRQIISNLVSNAVKFTHNGEVFIEVSVIKETNTEVQLYFE 602

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           +RDTG+GM   E+ K  KPF Q  +S   +  GTGLGL + K +V+   G   + S   +
Sbjct: 603 IRDTGIGMNEEEISKLFKPFSQADSSSTRKYGGTGLGLAICKKIVEMMGGTISVKSVKNR 662

Query: 801 GTLIEIIF 808
           GT      
Sbjct: 663 GTTFCFDL 670


>gi|329298208|ref|ZP_08255544.1| aerobic respiration control sensor protein ArcB [Plautia stali
           symbiont]
          Length = 781

 Score =  310 bits (794), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 90/440 (20%), Positives = 186/440 (42%), Gaps = 21/440 (4%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L             L+       + L        KA Q  E +  + +  E
Sbjct: 81  EESRQRLSKLVDKLEEMRTRDLELNQQMKEAISQLNQEISDRIKAEQAREQV-MDKLREE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
                  + ++E +   L S L+A+ D +   N +      NRA+  L G   + ++   
Sbjct: 140 MTRREQAQIELEQQSSFLRSFLDASPDLVFYRNIDKQFSGCNRAMELLTGLSEKQLIGLT 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK------KLPF 550
                +++  + +     ++   ++  T E+        +    +R +        ++  
Sbjct: 200 PRDIYDEDAATKVLETDEKVFRHNVSLTYEQWLQYPDGRKACFEIRKVPYKVPYYDRVGK 259

Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
            S       DI+E K+ ++ L +        S  K+ F++ +SHE+RTPL  I+G S ++
Sbjct: 260 RSGLMGFGRDITERKRYQDALEN-------ASREKTTFISTISHELRTPLNGIVGLSRIL 312

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
            +       N   ++Y   I  S   + +I ND++++ KIE  K+ L  +P+     +++
Sbjct: 313 LDTDL----NQEQLKYLKTIHVSAITLGNIFNDVIEVDKIERRKVQLDNQPLDFTGFLAD 368

Query: 671 AISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
             +L  L A  K +    +    +P  I AD   ++QI  N++ NA+ FT  G +I++  
Sbjct: 369 LENLSGLLAQPKGLKFVMAPELPLPHKISADGTRLRQILWNLIGNAVKFTRQG-EIVVRV 427

Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDAN 788
            +  +E +   V+D+G+G+   E +K    + Q+ +    +   GTG+GL +++ +  A 
Sbjct: 428 AYHQDETLHFEVQDSGMGIPQEEQDKIFAMYYQVKDQHGGKPATGTGIGLAVSRRLAQAM 487

Query: 789 MGKFYIFSTPAKGTLIEIIF 808
            G   + S P +G+   +  
Sbjct: 488 GGDITVSSAPGQGSCFTVEI 507


>gi|170748811|ref|YP_001755071.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
 gi|170655333|gb|ACB24388.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 676

 Score =  310 bits (794), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 96/396 (24%), Positives = 165/396 (41%), Gaps = 31/396 (7%)

Query: 435 PEDVDTRINKRKME----------IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
              + TR  +R+ E              +  +++ AT++ I   +  G I   N   ++L
Sbjct: 22  WRLLGTRRAEREAERLQDRIWRISESEDRYRALVAATTEIIVQRDARGRITYANEDFARL 81

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE--KLLSLR 542
            G     ++           +   +       + +             T +   +  +  
Sbjct: 82  LGREPIALIG----------SRDDLEILDRNAVEIGPDGVRRLEAQVRTADGRARWFAFV 131

Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
            +      ++ +     D++   +       A + AE  S  KS FLA VSHE+RTPL  
Sbjct: 132 EMPVAHGDATHWLRAGRDVTARVEAIRSRDAALERAEAASVAKSRFLATVSHEMRTPLNG 191

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           I+G ++++     G   NP    Y   +  SG  +L +++ +LD S+IE+G+++L  EP 
Sbjct: 192 ILGMADLVL----GTELNPEQRTYVEAVRTSGQALLGLIDGVLDFSRIEAGRLDLAAEPF 247

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPS 721
            L       + L+   A +K I I    A + P  +L D   V+QI +N+  NAI FT  
Sbjct: 248 DLPALSEGVVELLAPRAQDKGIEIALDVAEDFPAAVLGDADRVRQILINLAGNAIKFTER 307

Query: 722 GGQIIISTTHTS---NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
           GG + +S          EV+L V DTG G+    L    + F Q   S     EGTGLGL
Sbjct: 308 GG-VGVSLGFARAGTGGEVVLAVADTGPGIPEERLPILFEEFEQGDGSASRSHEGTGLGL 366

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
            + + +V    G+    S   +G+   ++ PL + +
Sbjct: 367 AITRRLVTRMGGRIEADSRLGRGSTFRVLLPLAEVA 402



 Score = 44.2 bits (103), Expect = 0.079,   Method: Composition-based stats.
 Identities = 23/210 (10%), Positives = 53/210 (25%), Gaps = 10/210 (4%)

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSV 357
              E  + R    +    +  +           I     + G + YAN  F  L   + +
Sbjct: 28  RRAEREAERLQDRIWRISESEDRYRALVAATTEIIVQRDARGRITYANEDFARLLGREPI 87

Query: 358 DDIEIAGGLSTLLDAPKL--SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
             I     L  L         D        +  +D      +     +  + + +  +  
Sbjct: 88  ALIGSRDDLEILDRNAVEIGPDGVRRLEAQVRTADGRARWFAFVEMPVA-HGDATHWLRA 146

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE---ATSDGIAI--INR 470
                A           +E  +  +    R +     ++ + L      +D +    +N 
Sbjct: 147 GRDVTARVEAIRSRDAALERAEAASVAKSRFLATVSHEMRTPLNGILGMADLVLGTELNP 206

Query: 471 EGI--ILSTNRAVSKLFGYPVEDILRKPFT 498
           E    + +   +   L G     +      
Sbjct: 207 EQRTYVEAVRTSGQALLGLIDGVLDFSRIE 236



 Score = 40.4 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 64/239 (26%), Gaps = 34/239 (14%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIG-MRLCDV----SDILHIDPNNHIGDLLKRQNTWY 144
           DA G +   +E+  + +G     +IG     ++    +  +  D    +   ++  +   
Sbjct: 66  DARGRITYANEDFARLLGREPIALIGSRDDLEILDRNAVEIGPDGVRRLEAQVRTADGRA 125

Query: 145 ------------GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192
                       G  T W   G ++   ++     I SR+               R +  
Sbjct: 126 RWFAFVEMPVAHGDATHWLRAGRDVTARVE----AIRSRDAALE-----------RAEAA 170

Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEK--EKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK 250
             A  + L      +     G   +       ++  +Q         +  + L       
Sbjct: 171 SVAKSRFLATVSHEMRTPLNGILGMADLVLGTELNPEQRTYVEAVRTSGQALLGLIDGVL 230

Query: 251 DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
           D          L +E   LP   +     L    + +      + +++    +      
Sbjct: 231 DFSRIEAGRLDLAAEPFDLPALSEGVVELLAPRAQDKGIEIALDVAEDFPAAVLGDADR 289


>gi|326804104|ref|YP_004321922.1| alkaline phosphatase synthesis sensor protein PhoR family protein
           [Aerococcus urinae ACS-120-V-Col10a]
 gi|326651621|gb|AEA01804.1| alkaline phosphatase synthesis sensor protein PhoR family protein
           [Aerococcus urinae ACS-120-V-Col10a]
          Length = 614

 Score =  310 bits (794), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 84/377 (22%), Positives = 174/377 (46%), Gaps = 30/377 (7%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           ++ ++  +L  +++    G+ +I+++  I   N+A   +F      I  K   V     T
Sbjct: 245 QISMQEERLQLLMDYLVVGVLMIDKKHRIKVANKAAYSIFDLDDNVINHKYEEVL----T 300

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF-----SSCYSLTMHD 560
              +   +    S    + +         +E +L + I+           S    +  +D
Sbjct: 301 GYRLLQMIETCYSTK--ENVNDEVYLYYPKELILDVNILYVPKKANVSGISEQVVVLAYD 358

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I+E ++ +                +SDF+A  SHE++TP+TA+ GF+E + +        
Sbjct: 359 ITEIRRLE--------------KVRSDFIANASHELKTPVTALKGFTETLLDGAL--EDE 402

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
               E+   ++R  N +  ++ND+LD++KIE  ++    E V L+  ++E +  +++ A+
Sbjct: 403 DTAREFVEIMNREANRLGFLINDILDLAKIEQDQLGHRSETVQLNRVIAEVVHSLEIPAS 462

Query: 681 EKRILIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTP-SGGQIIIS-TTHTSNEEV 737
           E R+ +          R   +   +KQI  N+++NAI +    GGQ+ IS T    ++ V
Sbjct: 463 ENRVEVHYDNDLEAGIRFTTEEMRLKQILTNLINNAIKYNKAEGGQVWISSTVTEDDKYV 522

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
           ++ +RD G+G+ + ++ +  + F ++  ++     GTGLGL + + +V +  GK  + S 
Sbjct: 523 VVAIRDNGLGIPDEDIPRIFERFYRVDKTRSTASGGTGLGLSIVRNLVASMSGKIDVVSE 582

Query: 798 PAKGTLIEIIFPLYDTS 814
             +G+   +  P  D S
Sbjct: 583 LNEGSTFTVYLPKNDKS 599


>gi|212692259|ref|ZP_03300387.1| hypothetical protein BACDOR_01755 [Bacteroides dorei DSM 17855]
 gi|265752877|ref|ZP_06088446.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_33FAA]
 gi|212665136|gb|EEB25708.1| hypothetical protein BACDOR_01755 [Bacteroides dorei DSM 17855]
 gi|263236063|gb|EEZ21558.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_33FAA]
          Length = 807

 Score =  310 bits (794), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 95/519 (18%), Positives = 190/519 (36%), Gaps = 42/519 (8%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
               +     +          P    +Y   G +   N   + +   +  +D+       
Sbjct: 302 RRSESEARLEKAYLQNIYKNLPAGIELYDKDGFMTDLNEKEMEIFGLRHKEDVIGLNLFD 361

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR------ENSLAMTFIPFEKA 421
             L    L D                I  S      + +         ++++        
Sbjct: 362 NPLLPQGLKDK---------LKAGAPIDMSFNYDFDRLDGYYSTSRTGTISLISKFAPLY 412

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR---EGIILSTN 478
           +     +    I  ++ +T     K++        I      G A  N    +G   + N
Sbjct: 413 DALGNLINILLINIDNTETTNAYSKIQDFEEFFTLIGNYAKVGYAHFNALKCDGY--AVN 470

Query: 479 RAVSKLF---GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
                +    G P+ +I++         +   +M  +  ++L       L +      ++
Sbjct: 471 SWYRNIGEKEGTPLNEIIK--VHSHFHPDDRRMMLRFFDQVLI-REASHLRRDVRILRED 527

Query: 536 EKLLS--LRIIIKKLPFSSCY---SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
                  + ++++               +DI+E K+ + KL  A+  AE+    KS FLA
Sbjct: 528 GTYTWTRVNVMVRDFRPEDGIIDMVCVNYDITELKETERKLIAARDKAEELDRLKSAFLA 587

Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650
            +SHEIRTPL AI+GFS ++              +Y   +  +  L+L +++D+LD+SK+
Sbjct: 588 NMSHEIRTPLNAIVGFSSLLTETE----DMKDRKQYMAIVQENTELLLQLISDILDLSKM 643

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710
           ESG          ++    E I  +++      + +          + AD   + Q+  N
Sbjct: 644 ESGAFEFVKSDTDVNLLCGEIIRSLRMKVPA-GVELVFEKCLPECHVWADKNRLNQVISN 702

Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
            ++NA+ FT SG  I +     ++  +   VRDTG+G+   +++     F ++ +     
Sbjct: 703 FINNALKFTFSGS-ITLGYYRQTDGYLRFYVRDTGMGIPRNKIKTVFDRFVKLNSFVH-- 759

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             GTGLGL + K++V+   G   + S   +G+     +P
Sbjct: 760 --GTGLGLSICKSLVEQMGGTIGVESEEGEGSCFWFTYP 796



 Score = 43.1 bits (100), Expect = 0.19,   Method: Composition-based stats.
 Identities = 24/232 (10%), Positives = 62/232 (26%), Gaps = 61/232 (26%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           K++    +L  ++     G   ++ +  +   +  V+ L G     I  K F   + +N 
Sbjct: 3   KIQENDARLQQLVSMARIGWWEVDFDEGVYYCSEFVADLLGIEGNKISAKDFANLICENY 62

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
              +                           +++ +   +  +            + E +
Sbjct: 63  RERILEEFRSF--------------------RMMEIYEQVFPIHSKYGMMWVSTKVGEKR 102

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
             K                                  ++G  + I  QR          +
Sbjct: 103 ITKEGHVR-----------------------------VMGMLQCISRQRMN-----MQEQ 128

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
             + ++   + +  I   LLD   + S  + L      +++ + E +   Q 
Sbjct: 129 TVDRLNSLLSRLNGISKSLLDF--LHSDDITLV-----INKILKEVLRQFQA 173



 Score = 41.9 bits (97), Expect = 0.48,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 28/56 (50%)

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
           ++ R ++ +  +E   L +I +    GI + +++G +   N    ++FG   ++ +
Sbjct: 299 MELRRSESEARLEKAYLQNIYKNLPAGIELYDKDGFMTDLNEKEMEIFGLRHKEDV 354


>gi|304397529|ref|ZP_07379407.1| integral membrane sensor hybrid histidine kinase [Pantoea sp. aB]
 gi|304355147|gb|EFM19516.1| integral membrane sensor hybrid histidine kinase [Pantoea sp. aB]
          Length = 950

 Score =  310 bits (794), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 94/391 (24%), Positives = 167/391 (42%), Gaps = 29/391 (7%)

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFG 486
           +         +    N  ++E        I+ +   GI I+   +G  + +N        
Sbjct: 334 LAWVFERRMFLPAEENAHRLEEHEQFNRKIVASAPVGICILRTSDGTNILSNELA----- 388

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
                     +   L Q     +N  +        +          T     L +  +  
Sbjct: 389 --------HNYLTLLTQEDRLRLNEII-----GGQQVNF---VDVLTGSNTNLQISFVHS 432

Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
           +    +     + D+S   + +  L      AE+ S  KS FLA VSHE+RTPL  IIG 
Sbjct: 433 RYRNENVAICVLVDVSARVRMEQSLQEMAHAAEQASQSKSMFLATVSHELRTPLYGIIGN 492

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
            ++++ +      +         ++ S +L+L I++D+LD SKIES ++ +   P +  E
Sbjct: 493 LDLLQTKELPSGIDS----LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPRPFAPRE 548

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQI 725
            V+  +        +KR+ +     +++P++L  D   ++Q+  N+L+NAI FT +G   
Sbjct: 549 IVTHIVGNYLSLVVKKRLTLYCFIEHDVPQVLDGDPLRLQQVISNLLNNAIKFTHTGC-- 606

Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
           II   + +   +  RVRDTGVG+   EL +   PF Q+ N  Q   +GTGLGL + + ++
Sbjct: 607 IILHAYVAQGYLAFRVRDTGVGIPAKELPRLFDPFFQVGNGVQRNFQGTGLGLAICEKLI 666

Query: 786 DANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           +   G   + S P  G+   +  P+Y    P
Sbjct: 667 NMMDGDIEVDSEPGMGSQFIVRIPIYQGQKP 697


>gi|329847837|ref|ZP_08262865.1| sensory box protein [Asticcacaulis biprosthecum C19]
 gi|328842900|gb|EGF92469.1| sensory box protein [Asticcacaulis biprosthecum C19]
          Length = 656

 Score =  310 bits (794), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 117/635 (18%), Positives = 225/635 (35%), Gaps = 35/635 (5%)

Query: 180 GFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK 239
           G  +  +  +     A  +  D         +  +        +  +        R    
Sbjct: 31  GILLCALISLFLASHAEERAEDDVRRAFAIQRDTYLVHA-LLAEAAAGVRGYALTRQDRF 89

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
           +    +  A  +  L+     ++  E  S  E+     +   +   K        N    
Sbjct: 90  LEPYRKAEAELEPTLRRLDAEIMDPEIRSRFERITSLAV-QKRQGLKTIIALAAANDGTK 148

Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDD 359
                       + Y  +G     E +              +      FL LT   ++  
Sbjct: 149 GHAALIDEALINNKYVLDGMRQEIEQIQLRERSLLDSRLERVEGVRNGFLFLTAISAIVG 208

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
           +  +     L     +     +       +    +                         
Sbjct: 209 LLGSLAAVYLFSTGIVRRVRNLDENAERLAQGEEL----------------------VDL 246

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTN 478
             +          +       R  ++ +     +   ++E   D GI  ++ +G++ S N
Sbjct: 247 PDDSDEIGHLAWRLSRASALLRGREQALRESEERFRLVVEEVRDYGIFALDPDGVVTSWN 306

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
               ++ G+  ++IL K F++F  Q T + +   +  +       T E       K+   
Sbjct: 307 LGAERIKGWSSQEILGKHFSMFYPQETQTHLPSEM--LERARQAGTAEDEGWRLRKDGSR 364

Query: 539 LSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
               +II  L               D++E ++ +  L  A++ A   +  KS+FL+R SH
Sbjct: 365 FWANVIITVLHDDRGEVCGFAKVTRDMTERRRAEEALKDAREEAIAANLAKSEFLSRTSH 424

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           E+RTP++AI+GF +++  +       P        I  +G  +L ++NDLLDIS IE+G 
Sbjct: 425 ELRTPMSAILGFGQLL--ELDENTLAPHQRAAVEQIMMAGRHLLSLINDLLDISSIEAGG 482

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714
             L  + V + +A+ E  +LV        + +      +   + AD R + QI LN ++N
Sbjct: 483 AELVIQDVDVADAIYEVQTLVAPIVAGAGLTLVVRDMTSGLTVSADRRRLIQILLNFIAN 542

Query: 715 AIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           A  +  SG  + +S     +  V + V D G G+    + +   PF ++   ++ + EGT
Sbjct: 543 AAKYHRSGQFVFVSARMEDD-HVRIEVEDDGDGIDKAAVSRLFTPFDRLGQPKRSKTEGT 601

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GLGL L+K +V++  G+     TPAKG       P
Sbjct: 602 GLGLALSKRLVESMTGQIGYE-TPAKGARFWFTLP 635



 Score = 67.7 bits (164), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 28/371 (7%), Positives = 96/371 (25%), Gaps = 18/371 (4%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID--PNNHIGDLLKRQNTW 143
            + +D  G +   +    +  G  + +++G               P+  +    +   T 
Sbjct: 293 IFALDPDGVVTSWNLGAERIKGWSSQEILGKHFSMFYPQETQTHLPSEMLERARQAG-TA 351

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +      +G+  +  + +  L  +    E  GF    +              K   ++
Sbjct: 352 EDEGWRLRKDGSRFWANVIITVL--HDDRGEVCGFAK--VTRDMTERRRAEEALKDAREE 407

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
               +  K    S    +              ++   ++L  +     + +      LL+
Sbjct: 408 AIAANLAKSEFLSRTSHELRTPMSAILGFGQLLELDENTLAPHQRAAVEQIMMAGRHLLS 467

Query: 264 --------SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
                   S   +   +     +++     +         +      +       L+   
Sbjct: 468 LINDLLDISSIEAGGAELVIQDVDVADAIYEVQTLVAPIVAGAGLTLVVRDMTSGLTVSA 527

Query: 316 DEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
           D    L    ++        +  G   + +        +  ++  +   G+     +   
Sbjct: 528 D-RRRLIQILLNFIANAAKYHRSGQFVFVSARMED--DHVRIEVEDDGDGIDKAAVSRLF 584

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
           +  + +      +++ T +  +     ++         T     +       + + G  P
Sbjct: 585 TPFDRLGQPKRSKTEGTGLGLALSKRLVESMTGQIGYETPAKGARFWFTLPAVRRVGTSP 644

Query: 436 EDVDTRINKRK 446
           +    +   R+
Sbjct: 645 KRTARKNKVRE 655


>gi|117923646|ref|YP_864263.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117607402|gb|ABK42857.1| amino acid-binding domain sensor hybrid histidine kinase
           [Magnetococcus sp. MC-1]
          Length = 843

 Score =  310 bits (794), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 101/419 (24%), Positives = 185/419 (44%), Gaps = 17/419 (4%)

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR--KMEIEVMQLCSILEATSDGI 465
              +       ++  +  +         ++++ R+++R   +E+  ++  ++  A    +
Sbjct: 290 RRVVLQAKRLEQEVAERQDAEQGLQHAHQELEQRVDERTQALEVSELRFRTLFHAALVPL 349

Query: 466 AIINREG-IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
              + +G  +L  N A+ +LFGY   + +            P +  H++  ++     + 
Sbjct: 350 FRSSLDGGRVLLANLALVELFGYSSVEEMVTLHDPLKSYADPLMREHFIDILVRDGRVEC 409

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
           L+   +    +       I     P        + DI+  K+ ++ L  AK+ AE+ +  
Sbjct: 410 LDVELV--RPDSSRFYAEISAIHYPEGGYLEGAIIDITHRKRTEHALIQAKQSAERANRA 467

Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
           KS+FLA +SHEIRTPL  +IG    ++  R     + +  E    I RS NL+LD++ND+
Sbjct: 468 KSEFLATLSHEIRTPLNGMIGLLTALQASRL----DAKQQEQVGLISRSSNLLLDLLNDI 523

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRS 703
           LD SKIE+G++ L   P S  + V +  + +   A  K + +R      IP  +  D   
Sbjct: 524 LDFSKIEAGELVLEQIPFSPLQLVEDVCACLSERAQGKGVGLRLETHGWIPPGLKGDAVR 583

Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNE-------EVILRVRDTGVGMTNYELEKA 756
           ++QI LN+ +NAI FT  G  ++                 +   V D+GVG+   ++ + 
Sbjct: 584 IRQIMLNLTNNAIKFTQQGEVVLHLWGLEQQPVPLPSWVSMRFGVVDSGVGIAAKDMGRI 643

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
             PF Q       R +GTGLGL + K +V+A  G+ +  S   +G+       L    H
Sbjct: 644 FDPFCQADRVLDRRYKGTGLGLSICKRLVEAMGGEIWAESQEGQGSSFRFTLTLALVEH 702


>gi|303326644|ref|ZP_07357086.1| sensory box sensor histidine kinase/response regulator
           [Desulfovibrio sp. 3_1_syn3]
 gi|302862632|gb|EFL85564.1| sensory box sensor histidine kinase/response regulator
           [Desulfovibrio sp. 3_1_syn3]
          Length = 683

 Score =  310 bits (793), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 107/484 (22%), Positives = 197/484 (40%), Gaps = 29/484 (5%)

Query: 341 LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK--------LSDNNAIKPVMLYRSDRT 392
           L + N             D E+   +  +L   K        L      + ++L    ++
Sbjct: 66  LVWFNQVLEKAHGASPPADTELLAPILDILLHRKSFCATDTSLMPAGPKRDLLLRLQVKS 125

Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK-RKMEIEV 451
            +     L+  Q      L     P +   +        G       T      ++  + 
Sbjct: 126 LLCLPI-LYDGQLFGGICLLHRVAPRQWTPEDAGICHLLGNMLAITLTHFRLYERLRHKH 184

Query: 452 MQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP-SVM 509
            QLC IL+A  D + II+ E   +L  N++V   F  P   +    +     +++P    
Sbjct: 185 DQLCDILDAFVDPVYIIDMESYELLFLNKSVEASFPKPEGPMGNICYKRLQGRDSPCPFC 244

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN 569
            + +    +   + T E      T       +  +I              D+++  + ++
Sbjct: 245 TNAIIASRNEPYQWTYENELTKRT----YTVVDKVIHWDTGHPVRLSISTDVTDLLRTQH 300

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +    K+ A   S  KS+FLA +SHEIRTP+  IIG + +          +P + +Y + 
Sbjct: 301 E----KQAAVIASQAKSEFLAHMSHEIRTPMNGIIGLTHLALQSD----PSPEHKDYLHK 352

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I  S   +L I+ND+LD+SKIE+ KM L     +++E +    + ++   ++K +     
Sbjct: 353 IRSSATSLLAIINDILDLSKIEANKMVLENVNYTMEEVLDFVYTSIRFPLDQKGLEYICE 412

Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILRVRDTG 745
            A+++P ++  D   +KQ+ LN+LSNA+ FT  G  + +     +++    +   V DTG
Sbjct: 413 VADDVPLKLWGDGLRLKQVLLNLLSNAVKFTSKGS-VRLRIRRENSDSQDLLHFMVTDTG 471

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G++    +    P+ Q   S   R  GTGLGL + K +     G  +  S P  G+   
Sbjct: 472 MGISREYQQHLFDPYTQANASIARRFGGTGLGLSICKRIAGLMRGNLWCESEPGNGSTFH 531

Query: 806 IIFP 809
           +  P
Sbjct: 532 LSIP 535


>gi|189218172|ref|YP_001938814.1| phosphate regulon sensor protein phoR [Methylacidiphilum infernorum
           V4]
 gi|189185030|gb|ACD82215.1| Phosphate regulon sensor protein phoR [Methylacidiphilum infernorum
           V4]
          Length = 439

 Score =  310 bits (793), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 86/385 (22%), Positives = 164/385 (42%), Gaps = 32/385 (8%)

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
            + +      + E + L +IL++ ++GIAII+R  +I   N + +++ G       +K  
Sbjct: 70  TELQRLIHASKEEEINLNTILKSMAEGIAIIDRSHLIKIANESFTRILGLSGNPQGKKLV 129

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL--------LSLRIIIKKLP 549
            +        ++            ++ L +  LG+  + KL        + + I   +  
Sbjct: 130 ELIQLPEVEKMIEEAFKA------QEPLSQEILGTETKGKLSGYFVVDAVPV-ITKSQDL 182

Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
            S    L   DI+E K  +                + +F+  VSHE+RTPL    G+ E 
Sbjct: 183 PSDIMVLVFRDITEIKMFEE--------------ARKEFVINVSHELRTPLAIFKGYVET 228

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           + +     L           + +    +  ++ DLL ++K+ES K+ +   PVS+ E + 
Sbjct: 229 LTDNP--RLSKSEVKRIYEILKKHCQRLSSLIEDLLLLAKLESRKLTIETTPVSIAEFLE 286

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
           E I  +     +K   +      ++P +  D    +Q   N++ NA+ F+    +++I  
Sbjct: 287 ETIQDLHPLFKQKECTVNLLIEPDLPTVEIDPFWFQQAVYNLVDNALKFSIPPRKLVIEA 346

Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
                  V L++ D G G+ + +L      F +   S+    +GTGLGL + K +V+ + 
Sbjct: 347 QKIDQNFV-LKIIDNGFGIPSKDLPFIFDRFYRGDKSRSSEQKGTGLGLSITKQIVELHG 405

Query: 790 GKFYIFSTPAKGTLIEIIFPLYDTS 814
           G+    S P KGT +E+ FPL   +
Sbjct: 406 GQIRAISEPEKGTTMELTFPLQREN 430


>gi|302185632|ref|ZP_07262305.1| PAS [Pseudomonas syringae pv. syringae 642]
          Length = 1165

 Score =  310 bits (793), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 127/670 (18%), Positives = 237/670 (35%), Gaps = 36/670 (5%)

Query: 149 LWPIEGTNLYVPIDLAALPI--YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
            W  +   + V ++ A  P+  +     F G     I          R   +   K+   
Sbjct: 256 RWIAQHPTVRVVVNEAYAPLTFFDAKGNFRG-----ITADLLELVRLRTGLRFDVKRSPS 310

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
           L ++    S  + +                ++++S    Y  +   ++  +     +  E
Sbjct: 311 LTDMLSQVSEGQADMIGALVSSD-----VREDRLSFSRPYIDNSFVLVTRKDQGAPSYLE 365

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
                      I                      +              +          
Sbjct: 366 ---QMDGKRLAITQGSPMLDWLGRKYPRVVPLEIDNPFQTLDMLSLGRAEGAVVSLLSAD 422

Query: 327 DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
                  F               L++   S + IE++  L   L +    D  AI     
Sbjct: 423 YFLSSGIFEDRLQMTATVGEDPALISMATSRNAIELSSILDKALASIAPQDLAAINNRWR 482

Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
             +            +  W+    L    I                +  +       +R 
Sbjct: 483 VYTP----------SSANWHDYQRLIYQIIVGAGLLLLGLLAWNAWMRRQIRQREAAERA 532

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV--FLEQN 504
           +  +   + +++E T   I + +REG++   N +  K+F    EDI+ K  T        
Sbjct: 533 LGDQFEFMRALVEGTPHPIYVRDREGMLRMCNDSYLKVFSAQREDIIGKSATEGGLGNAF 592

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL-SLRIIIKKLPFSSCYSLTMHDISE 563
                      +++ D    L++      +E  +   +      L           DISE
Sbjct: 593 EAREYAADYQRVMASDTALILDRPLHIGERELTIYHWILPFRDSLGEVQGIIGGWIDISE 652

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            +Q    L  AK+ A+  S  KS FLA +SHEIRTP+ A+IG  E+   +      +   
Sbjct: 653 RRQLIEDLQAAKEQADAASRAKSTFLATMSHEIRTPMNAVIGMLELALKRAEHGELD--- 709

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
                    S N +LD++ D+LDI++IESG+++L+ E  +L   V   + +    A +K 
Sbjct: 710 RSAIEVAYSSANDLLDLIGDILDIARIESGRLSLNPERANLRRLVESVLRVFDGLARQKD 769

Query: 684 ILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNE---EVI 738
           + +     + I   +L D    KQI  N++SNAI FTP G  ++++    + +     + 
Sbjct: 770 LELVLELDSRINADVLIDPLRFKQILSNLVSNAIKFTPMGRIKVVLQAAESPDPQLLHLH 829

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           + V+D+G+G++  + ++  +PF Q  N+ Q+   G GLGL + +++     G   + STP
Sbjct: 830 ITVQDSGIGISVEDQQRLFEPFAQADNTGQMARTGAGLGLVICRSLCMMMGGNLSLDSTP 889

Query: 799 AKGTLIEIIF 808
             GT I +  
Sbjct: 890 GHGTRISMNL 899



 Score = 41.2 bits (95), Expect = 0.80,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 52/240 (21%), Gaps = 12/240 (5%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCD--VSDILHIDPNNHIGDLLKRQNTWYGKT 147
           D  G L+  ++   K        +IG    +  + +             +   +T     
Sbjct: 555 DREGMLRMCNDSYLKVFSAQREDIIGKSATEGGLGNAFEAREYAADYQRVMASDTALILD 614

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
               I    L +   +  LP      E  G  G  I              +   ++    
Sbjct: 615 RPLHIGERELTIYHWI--LPFRDSLGEVQGIIGGWI--DISERRQLIEDLQAAKEQADAA 670

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
              K    +    +                 +++     +   D       Y        
Sbjct: 671 SRAKSTFLATMSHEIRTPMNAVIGML-----ELALKRAEHGELDRSAIEVAYSSANDLLD 725

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY-LSHRNHPSLSAYFDEGENLTPETV 326
            + +  D   I   + +       L+   +              L    +    +  + +
Sbjct: 726 LIGDILDIARIESGRLSLNPERANLRRLVESVLRVFDGLARQKDLELVLELDSRINADVL 785


>gi|71906576|ref|YP_284163.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase A, N-terminal:Hpt
           [Dechloromonas aromatica RCB]
 gi|71846197|gb|AAZ45693.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal:Hpt
           [Dechloromonas aromatica RCB]
          Length = 852

 Score =  310 bits (793), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 91/397 (22%), Positives = 171/397 (43%), Gaps = 33/397 (8%)

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREG--------IILSTN---------RAV 481
                +  +     +L   +++T    A +N  G         +   N         R  
Sbjct: 29  ARAAQQHALADGTEKLLGTVDSTYRAYAGLNLSGWHTKLSGDALTDWNIGSGTIDSGRQW 88

Query: 482 SKLFGYPVEDILRK--PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE--K 537
            ++ GY   D+      +   +  +   ++   +   +        +       ++   +
Sbjct: 89  KEMLGYADGDLDNSIAQWQRMVHPDDLRLLQTRIEAHIQNQDSH-FQAECRFKARDGQWR 147

Query: 538 LLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
              LR  +             +   DIS+ K  ++ L  AK++AE  +  +  FLA +SH
Sbjct: 148 WFLLRGAVAARNAEGKPARVLVLQRDISDVKAAESALISAKEVAESANKARGAFLANMSH 207

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           EIRTP+  IIG +E+  + +     +     Y   +  S   +L IVND+LD SKIE+GK
Sbjct: 208 EIRTPMNGIIGMTELALDTQL----DAEQRHYLKTVKSSAEALLTIVNDILDFSKIEAGK 263

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILS 713
           M       S+ + V EA+ ++ + A++K + +       +P RI+ D   ++Q+ +N++ 
Sbjct: 264 MEFESLVFSMQDTVLEAVRVLAVSAHKKGLELVADVRPEVPARIVGDPTRLRQVIINLIG 323

Query: 714 NAIHFTPSGG---QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           NAI FT  G    ++ +  +   +  +   +RDTG+G+   + +   + F Q   S   R
Sbjct: 324 NAIKFTERGEVALKVEVDQSTERSVYLRFSIRDTGIGVPADKQQAIFEAFSQADVSTTRR 383

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
             GTGLGL ++  +V    GK ++ STP +G++    
Sbjct: 384 FGGTGLGLAISARLVQLMDGKIWLESTPGQGSVFSFT 420


>gi|160937422|ref|ZP_02084783.1| hypothetical protein CLOBOL_02313 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439491|gb|EDP17241.1| hypothetical protein CLOBOL_02313 [Clostridium bolteae ATCC
           BAA-613]
          Length = 1114

 Score =  310 bits (793), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 112/529 (21%), Positives = 202/529 (38%), Gaps = 43/529 (8%)

Query: 322 TPETVDKCPIPFFVYSHGN---LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
                +  P    + S          N   + L + +     E   G S L D     D 
Sbjct: 323 ISRLYNAVPEGIALMSVEAPYDFRLMNQEGMRLFRCQEGASNEAMKGKS-LRDVIHPEDY 381

Query: 379 NAIKPVMLYRSD-RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
             +  +    +D         R+ T+            I     ++    +       + 
Sbjct: 382 ENLVQLFKDTADSGRKNIFEVRVITL---DNGFFWAAGIVERTLDENGNPVL-ISAFHDI 437

Query: 438 VDTRINKRKMEIEV--MQLCSI--LEATSDGIAIIN---REGIILSTNRAVSKLFGYPVE 490
            D ++ +   E E    +L  +  +      I  +N        +     +  +     +
Sbjct: 438 TDEKLAEEAAEREKLQERLTLVGAISNAYPVIISLNLTRDSLNFIYVKPGL--MLELGNQ 495

Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI-------TLGSTKEEKLLSLRI 543
           +   + +        P  +  +     + +L +TL +              + +   + +
Sbjct: 496 ESYSQLYEYVAASIHPEHLEEFCRRFSAENLNKTLGQEKNEVFLDVRQMLGDGRYHWVSM 555

Query: 544 IIK----KLPFSSCYSLTMHDISEWKQEKNK----LSHAKKIAEKESSHKSDFLARVSHE 595
            I              L    I E + E+ +    L  A   A   S  KS FL+ +SH+
Sbjct: 556 QIIHVDNPYSGDKLAILISRRIDEQRYEEEQKRSALQSALDNARAASEAKSQFLSNMSHD 615

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           IRTP+ AI+G +  I + R       R +E    I  S   +L ++ND+LD+SKIESGK+
Sbjct: 616 IRTPMNAIVGMTA-IASTRLD--DRERVMECLKKISLSSKHLLSLINDVLDMSKIESGKL 672

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN-NIPRILADLRSVKQIALNILSN 714
           ++  EP +L E V+E+  LV+  A  K + +           ++ D   ++QI +NILSN
Sbjct: 673 SIREEPFNLAELVTESAELVRPQAEAKHLEMDVHLKGLKNEEVVGDSLRIRQIYINILSN 732

Query: 715 AIHFTPSGGQIIISTTHTSN-----EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
           A  +TP GG + +               + R  DTG+GM++  + K  +PF +  +S   
Sbjct: 733 AAKYTPEGGSVHVEVRQEQGAGRGYGRYVFRCADTGIGMSSEFMSKLFQPFERAQDSTNS 792

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL-YDTSHPH 817
           R  GTGLG+ + K ++D   G   + S P +G++  +  PL +  + P 
Sbjct: 793 RVTGTGLGMAITKNLIDLMNGDIRVESRPREGSVFTVALPLQFQDAAPE 841


>gi|126727385|ref|ZP_01743220.1| sensory box histidine kinase/response regulator [Rhodobacterales
           bacterium HTCC2150]
 gi|126703380|gb|EBA02478.1| sensory box histidine kinase/response regulator [Rhodobacterales
           bacterium HTCC2150]
          Length = 832

 Score =  310 bits (793), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 84/389 (21%), Positives = 180/389 (46%), Gaps = 15/389 (3%)

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
             +  ++    ++ +I+  + DG+ + +  GIIL  N A   +FG   ED+L+K     +
Sbjct: 204 KRESDLKQSATRMKTIMGTSLDGVIVCDDNGIILEFNPAAEAMFGTIEEDVLKKKIGDVI 263

Query: 502 EQNTPSVMNHY-LTEILSLDLRQTLEK---ITLGSTKEEKLLSLRIIIKKLPFSSC--YS 555
             +     +   +  + +   ++ + K           ++   + + I+         + 
Sbjct: 264 VPDYLRAAHEAGIKRMQANGEKRVVGKGRVRLEARHSSDRTFPVELAIQTAETDQGDVFI 323

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
             + DIS     +++L  A+  A      K++FL+ +SHEIRTPL  ++G   ++++   
Sbjct: 324 AFLRDISHRVAAESELVVARDKALASEKMKTEFLSTMSHEIRTPLNGLLGNMNLLRDTNL 383

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
               NP+   +  Y++ SG L+++ ++D+LDI++ ++GK++   EPV++     + +   
Sbjct: 384 ----NPKQERFIGYMETSGRLLMNHISDVLDITRYDAGKLSARSEPVNVSALFQDIVDNQ 439

Query: 676 QLYANEKRILIRTS-FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
              A      +  +   N +  + +D   ++ + +N++ NA+ FT  G ++ +S  +  N
Sbjct: 440 SGAAFNNSTSLTWNWIGNPMDWVTSDHDRLQHVMMNLIGNAVKFTKDG-EVSVSVENIGN 498

Query: 735 E---EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
               E+++++ DTG GM++    +  + F     +      GTGLGL +AK  V A  G+
Sbjct: 499 AQEPELLVKIVDTGPGMSDELSARVFEDFVTGTTAYDREVGGTGLGLSIAKRFVSALGGE 558

Query: 792 FYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820
             + S   KG+      P+     P   +
Sbjct: 559 IGVESVLGKGSTFWFKMPVETAEEPAPIV 587



 Score = 38.9 bits (89), Expect = 4.0,   Method: Composition-based stats.
 Identities = 14/141 (9%), Positives = 39/141 (27%), Gaps = 9/141 (6%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-----NHIGDLLKRQNTWY 144
           D +G + E +       G     ++  ++ DV    ++          +    +++    
Sbjct: 231 DDNGIILEFNPAAEAMFGTIEEDVLKKKIGDVIVPDYLRAAHEAGIKRMQANGEKRVVGK 290

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
           G+  L     ++   P++LA     +   +         +          +       K 
Sbjct: 291 GRVRLEARHSSDRTFPVELAIQTAETDQGDV----FIAFLRDISHRVAAESELVVARDKA 346

Query: 205 SHLHEIKKGHSSVEKEKYDIF 225
               ++K    S    +    
Sbjct: 347 LASEKMKTEFLSTMSHEIRTP 367


>gi|327440461|dbj|BAK16826.1| signal transduction histidine kinase [Solibacillus silvestris
           StLB046]
          Length = 938

 Score =  310 bits (793), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 92/385 (23%), Positives = 171/385 (44%), Gaps = 30/385 (7%)

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED------- 491
           +      ++E       +I++ T++GI  +++ G +L  N+A+  +  YP E+       
Sbjct: 439 ERIFMYEEVERSRKLNQTIIDTTNEGIQFVSKYGEVLLLNKALFNIIRYPFEEIDDKVPQ 498

Query: 492 -ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
            +  K F    E++   V    +  I      +T+        +    + +         
Sbjct: 499 QLWLKHFQKIAEESDELVYFLKIAIIEEFTNTRTMRYSIQQDGRSPVFVEVYATSVFEGD 558

Query: 551 SS-CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                     DI+                 +    KS+ ++ VSHE+RTPL++++GF+E+
Sbjct: 559 EKVGTMFVHRDIT--------------SEYEVDMMKSELVSTVSHELRTPLSSVLGFTEL 604

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           +  +   P    R  +Y   I +    + +++ND LDI +IESG+       +SL   + 
Sbjct: 605 LLAKEIKP---ERQKKYIETIHKEAKRLTNLINDFLDIQRIESGQQVYSMNKISLTALIE 661

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
           + +   Q+   +  I       N I  + AD   + Q+  N++ NAI F+P+GG+III  
Sbjct: 662 DVLKNFQID-PQHNIRFVDESTNAI--VSADEERIIQLLFNLIGNAIKFSPNGGEIIIRM 718

Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
            +  NE V + ++D G+G+    +    + F ++ NS + +  GTGLGL L+K ++  + 
Sbjct: 719 QNI-NETVQVSIQDCGIGIPESAIPSLFQKFKRVDNSSRRKIGGTGLGLALSKEIISKHK 777

Query: 790 GKFYIFSTPAKGTLIEIIFPLYDTS 814
           G  ++ S    GT I    PLYD  
Sbjct: 778 GDIWLESEEGIGTTIFFTLPLYDQE 802


>gi|70725019|ref|YP_251933.1| signal transduction two-component sensor histidine kinase, VicK
           [Staphylococcus haemolyticus JCSC1435]
 gi|123762363|sp|Q4LAJ8|WALK_STAHJ RecName: Full=Sensor protein kinase walK
 gi|68445743|dbj|BAE03327.1| signal transduction two-component sensor histidine kinase, VicK
           [Staphylococcus haemolyticus JCSC1435]
          Length = 608

 Score =  310 bits (793), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 76/387 (19%), Positives = 171/387 (44%), Gaps = 27/387 (6%)

Query: 426 ENMPQNGIEPEDVDTRINKRKM--EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           + + +  +   ++  R+ + +   E E  +L S++   SDGI   +R G +   N    K
Sbjct: 234 DEIGELALAFNNLSKRVQEAQANTESEKRRLDSVITHMSDGIIATDRRGRVRIVNDMAIK 293

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           + G   ED++       L       ++       S  L    ++  +        ++   
Sbjct: 294 MLGMSKEDLIGYYMLSVLNLEDEFSLDEIQENNDSFLLDINEDEGIIAR------VNFST 347

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
           I+++  F + Y   +HD++E +Q + +              + +F+A VSHE+RTPLT++
Sbjct: 348 IVQETGFVTGYIAVLHDVTEQQQVERE--------------RREFVANVSHELRTPLTSM 393

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
             + E ++   +    +     + +        ++ +VNDLL +SK+++    +  E V 
Sbjct: 394 NSYIEALEEGVW--KDDNLAPSFLSVTREETERMIRLVNDLLQLSKMDNESEQITKEIVD 451

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
            +  +++ I+  +     K         +       D   + Q+  N+++NA+ ++    
Sbjct: 452 FNMFINKIIN--RHEMAAKDTTFVREIPSETIFTEIDPDKMTQVFDNVITNAMKYSRGEK 509

Query: 724 QIIISTTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
           ++       +    + +R++D G+G+   +++K    F ++  ++  +  GTGLGL ++K
Sbjct: 510 RVEFHVKQNALYNRMTIRIKDNGIGIPINKVDKIFDRFYRVDKARTRKMGGTGLGLAISK 569

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFP 809
            +V+A+ G+ +  S   +GT I I  P
Sbjct: 570 EIVEAHNGRIWANSVEGQGTSIFITLP 596


>gi|153837140|ref|ZP_01989807.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio
           parahaemolyticus AQ3810]
 gi|260900476|ref|ZP_05908871.1| LuxQ, periplasmic family [Vibrio parahaemolyticus AQ4037]
 gi|149749557|gb|EDM60303.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio
           parahaemolyticus AQ3810]
 gi|308106963|gb|EFO44503.1| LuxQ, periplasmic family [Vibrio parahaemolyticus AQ4037]
          Length = 858

 Score =  310 bits (793), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 83/376 (22%), Positives = 163/376 (43%), Gaps = 23/376 (6%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            ++E +      +       I + +  G+++  N A  K      +     P     +  
Sbjct: 350 EELEAQKRSFRDLFNFALSPIMVWSEAGVLIQINPAARKELVIENDIETMHPVFKGFKDK 409

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISE 563
               +           +   +          +K+    +   ++    S   +   DI+ 
Sbjct: 410 LVPHLRMAAQGATLTGVNVPI---------GDKVFRWNLSPIRVDGDISGIIVQGQDITT 460

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + + + + A++ AEK +  ++DFLA++SHEIRTP+  I+G ++++K+     +     
Sbjct: 461 LIEAEKQSNLARREAEKSAQARADFLAKMSHEIRTPINGILGVAQLLKD----SVEAEEQ 516

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
               + +  SG  +L ++ND+LD SKIE GK N+   P S  + +    ++ +     K 
Sbjct: 517 KNQIDVLRHSGEHLLAVLNDILDFSKIEQGKFNIQKHPFSFADTMRTLENIYRPICENKG 576

Query: 684 ILIRTS--FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-----SNEE 736
           + +        N+  I  D   + QI  N++SNA+ FTPSG  + +           N  
Sbjct: 577 VELVIENRLDGNV-EIFTDQVRLNQILFNLVSNAVKFTPSG-CVRLHAELEQFYGADNSV 634

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           +++ + DTG+G+ + +L++  +PF Q   +      G+GLGL + K +VD   G   + S
Sbjct: 635 LVVEISDTGIGIESDKLDEMFEPFVQEEATTTREYGGSGLGLTIVKNLVDMLDGDVQVRS 694

Query: 797 TPAKGTLIEIIFPLYD 812
              +GT   +  P+ D
Sbjct: 695 QKGQGTTFVVTLPVKD 710


>gi|154249956|ref|YP_001410781.1| multi-sensor hybrid histidine kinase [Fervidobacterium nodosum
           Rt17-B1]
 gi|154153892|gb|ABS61124.1| multi-sensor hybrid histidine kinase [Fervidobacterium nodosum
           Rt17-B1]
          Length = 969

 Score =  310 bits (793), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 108/553 (19%), Positives = 200/553 (36%), Gaps = 57/553 (10%)

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEI 362
              +   L               +  P+   V   +GN+   NP F  +   +  + I  
Sbjct: 144 EITDIKKLEEEVIAESKKYQTLFEFSPLGILVEDSNGNILDVNPEFCKINCLRKEELIGQ 203

Query: 363 AGGLSTLLDAPK---------LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
              +    +  +         +S    I  V                  I         +
Sbjct: 204 HVSILAPKEDYEQVIKNIKEIISGKTLIHTVRNLSRSGEVKYLELYERKITLPDGKDGIL 263

Query: 414 TFIPFEKANQFPE-----------NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
           +           +            + Q  +   +       ++++  +  +   L    
Sbjct: 264 SIQKDITKIVMAQKVIKSLAKYQQIILQLALNIINTPVEKIDKEIKRAIELIAKELNTNR 323

Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522
             +   + +G   S +        Y    I     +  ++  +   ++  +        +
Sbjct: 324 IRVYKFSADGSFNSISNWF-----YSNNPIENTFVSFNIKDISGKELDELMAGKQFSIAK 378

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM----HDISE--------------- 563
           Q +    +     E  +SL   IK       +          ++                
Sbjct: 379 QNVSNEFIKKMFGENSISLITPIKINENVIGFISAAFKEDRALTVAEKRIFLLLATLLAN 438

Query: 564 ---WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
               K+ + +L  AK+ AEK +  KS FLA +SHEIRTPL  IIGF+ ++K  +     +
Sbjct: 439 SEIRKKYEEELIKAKQEAEKANQAKSIFLANMSHEIRTPLNGIIGFTNLLKETKL----D 494

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
            +  +Y + I +S  L+L+I+ND+LD++KIESGK  L     +L   +  ++ L +  A 
Sbjct: 495 EKQEKYVSIILKSSELLLEIINDILDLAKIESGKYQLEPLETNLKMELQSSLLLYEAKAK 554

Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH----TSNE 735
           EK +         I   ++ D   ++Q+  N+++NAI FTP+GG + +          +E
Sbjct: 555 EKNVEYEIRIDKEISDCLILDSVRLQQVMFNLINNAIKFTPAGGSVKVFVKKISEDEEHE 614

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            +   V DTG+G+   +LEK  +PF Q   S   +  GTGLGL ++  +V     K  + 
Sbjct: 615 NIRFSVIDTGIGIPKEKLEKIFEPFEQASVSVTKKYGGTGLGLAISNLIVSMMGSKIIVE 674

Query: 796 STPAKGTLIEIIF 808
           S   KG+      
Sbjct: 675 SEEEKGSHFYFDL 687



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/245 (13%), Positives = 76/245 (31%), Gaps = 36/245 (14%)

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
                ++ +  ++  +  +   +     E  D +  + ++  E  +  ++ E +  GI +
Sbjct: 116 GRYFQISVVDIKEKVKNSKFEGKAVFFHEITDIKKLEEEVIAESKKYQTLFEFSPLGILV 175

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
            +  G IL  N    K+     E+++ +  ++   +     +   + EI+S         
Sbjct: 176 EDSNGNILDVNPEFCKINCLRKEELIGQHVSILAPKEDYEQVIKNIKEIIS-GKTLIHTV 234

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
             L  + E K L L      LP           DI++    +  +    K   K      
Sbjct: 235 RNLSRSGEVKYLELYERKITLPDGKDGILSIQKDITKIVMAQKVI----KSLAKYQQIIL 290

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
                +   I TP                              ID+     ++++   L+
Sbjct: 291 QLALNI---INTP---------------------------VEKIDKEIKRAIELIAKELN 320

Query: 647 ISKIE 651
            ++I 
Sbjct: 321 TNRIR 325



 Score = 44.2 bits (103), Expect = 0.087,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 49/121 (40%), Gaps = 26/121 (21%)

Query: 458 LEATSDGIAIINREGIILSTNRAVSKL----FGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
            ++T+D I +I++E  ILS N++ S +     G   E++  K  +               
Sbjct: 52  FDSTNDMIVLIDKEEHILSYNKSFSSMVKEFLGI--EELAYKNIS--------------- 94

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKN 569
            EILS +    +        K  +   + ++  K    +      ++  H+I++ K+ + 
Sbjct: 95  -EILSQECISVIRNGYGIVEKFGRYFQISVVDIKEKVKNSKFEGKAVFFHEITDIKKLEE 153

Query: 570 K 570
           +
Sbjct: 154 E 154


>gi|251791347|ref|YP_003006068.1| aerobic respiration control sensor protein ArcB [Dickeya zeae
           Ech1591]
 gi|247539968|gb|ACT08589.1| multi-sensor hybrid histidine kinase [Dickeya zeae Ech1591]
          Length = 779

 Score =  310 bits (793), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 91/448 (20%), Positives = 178/448 (39%), Gaps = 19/448 (4%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L             L+  Q           I      +    +  + +  E
Sbjct: 81  EESRQRLSRLVAKLEEMRQRDQELNE-QLQGNIGQLNQEISDRIKAEEARLLMVSKLREE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
                  + ++E +   L S L+A+ D +   N        NRA+  L G   + ++   
Sbjct: 140 MARREQAQVELEQQSALLRSFLDASPDLVYYRNENKEFSGCNRAMELLIGKSQKQLIGLT 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII--KKLPFSSCY 554
                       +     ++   ++  T E+  +     +    LR +    ++      
Sbjct: 200 PKDVYSPEIAEKVMETDEKVFRHNVSLTYEQWLVYPDGRKACFELRKVPFYDRMGKRHGL 259

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+ ++ L +        S  K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 260 MGFGRDITERKRYQDALEN-------ASREKTTFISTISHELRTPLNGIVGLSRILLDTH 312

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                +    +Y   I  S   + +I ND++++ K E  K+ L  +PV     V +  +L
Sbjct: 313 L----DAEQQKYLKTIHVSAITLGNIFNDIIEMDKQERRKVQLDNQPVDFVGFVVDLENL 368

Query: 675 VQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
             L A  K + +       +P  I+ D   ++QI  N+LSNA+ FT  G ++++   H  
Sbjct: 369 GGLLAQPKGLQLEMELHQPLPKTIITDGTRLRQILWNLLSNAVKFTCEG-RVVVRVWHEQ 427

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMGKF 792
            + +   V D+G+G+   ELEK    + Q+ +    +   GTG+GL ++K +  +  G  
Sbjct: 428 GDRLRFEVEDSGMGIPADELEKIFSMYYQVKDQHGGKPATGTGIGLAVSKRLAQSMGGDI 487

Query: 793 YIFSTPAKGTLIEIIF--PLYDTSHPHD 818
            + S   KG+   +    P+     P +
Sbjct: 488 QVSSQLGKGSCFTLTVTAPVGLIDEPGE 515



 Score = 40.4 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 46/394 (11%), Positives = 103/394 (26%), Gaps = 26/394 (6%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN-TWYGKTTLWPIE 153
               +  +   IG    ++IG+   DV      +      + + R N +   +  L   +
Sbjct: 177 FSGCNRAMELLIGKSQKQLIGLTPKDVYSPEIAEKVMETDEKVFRHNVSLTYEQWLVYPD 236

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
           G       +L  +P Y R  +  G  GFG           +   +   ++ +        
Sbjct: 237 GRKACF--ELRKVPFYDRMGKRHGLMGFG--RDITERKRYQDALENASREKTTFISTISH 292

Query: 214 HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK------DDVLKTEKYPLLTSEES 267
                       S+     HL  + +    T + +        +D+++ +K      +  
Sbjct: 293 ELRTPLNGIVGLSRILLDTHLDAEQQKYLKTIHVSAITLGNIFNDIIEMDKQERRKVQLD 352

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV- 326
           + P       ++L                 E  + L        +       NL    V 
Sbjct: 353 NQPVDFVGFVVDLENLGGLLAQPKGLQLEMELHQPLPKTIITDGTRLRQILWNLLSNAVK 412

Query: 327 ----DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
                +  +  +      L +              D++E    +   +            
Sbjct: 413 FTCEGRVVVRVWHEQGDRLRF---EVEDSGMGIPADELEKIFSMYYQVKDQHGGKPATGT 469

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSL-------AMTFIPFEKANQFPENMPQNGIEP 435
            + L  S R   +    +       + S         +  I     ++  E         
Sbjct: 470 GIGLAVSKRLAQSMGGDIQVSSQLGKGSCFTLTVTAPVGLIDEPGEDEQEELPLPALHVL 529

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469
              D  +N       + +L S ++    G A ++
Sbjct: 530 LVEDIELNVVVARSVLEKLGSSVDVAMTGQAALD 563


>gi|226947571|ref|YP_002802662.1| sensory box histidine kinase [Clostridium botulinum A2 str. Kyoto]
 gi|226841036|gb|ACO83702.1| sensory box histidine kinase [Clostridium botulinum A2 str. Kyoto]
          Length = 617

 Score =  310 bits (793), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 84/362 (23%), Positives = 160/362 (44%), Gaps = 10/362 (2%)

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLF-GYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           ++E   D I I  ++  I+  N + ++L       ++       F+ +     + + L  
Sbjct: 222 LIENARDAIIIHRKD-KIVFANESAAELLICSNNNELQNLNINSFILKEEQKKIRNKLEL 280

Query: 516 ILSLDLRQTLEKITLGSTKEEKL-LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA 574
           +          +  + + K +K+ +                  + DI+  KQ +      
Sbjct: 281 VYRNKRDIVCVEQVIQNNKRKKINVESISTYIIYNNKPAILSILRDITSQKQVEKLQKDV 340

Query: 575 KKIAEKESSHK------SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
           +K  E  +  +      +DFLA +SHE++TPL  I    +++   +       +  +Y  
Sbjct: 341 EKNIELLNESREYNKLITDFLANISHELKTPLNVIFTAVQILDLYKKDAESYDKKEQYIK 400

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I ++   ++ ++N+LLD +K++SG + L+    ++   V E    V  YA  K I I  
Sbjct: 401 VIKQNCYRLMRLINNLLDTTKLDSGYLKLNLVNCNIVNLVEEITLSVVYYAESKNINIIF 460

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748
                   +  D   +++I LN+LSNAI FT  GG I ++     +  +I+ V+DTG+G+
Sbjct: 461 DTDVEEKIMAVDPDKIERIVLNLLSNAIKFTGGGGNIYVTVKDFEDN-IIISVKDTGIGI 519

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
              ++E     F Q+  + +   EG+G+GL L K+ V+ + G   I S   KG+   I  
Sbjct: 520 PEDKIENIFDRFVQVDKTLRRNKEGSGIGLYLVKSFVNMHEGTINIQSEIGKGSEFIINI 579

Query: 809 PL 810
           P+
Sbjct: 580 PI 581


>gi|254412023|ref|ZP_05025798.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196180989|gb|EDX75978.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 426

 Score =  310 bits (793), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 94/415 (22%), Positives = 178/415 (42%), Gaps = 15/415 (3%)

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR-----KMEIEVMQLCSILEATS 462
           E+         ++     + + +  I  E+ D +  +        + E+     + E TS
Sbjct: 16  ESLFNQINQAADQPEILSKILEEFSITLEEFDQQQQELVTINNASDSELQHYRELFECTS 75

Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522
           +   + N  G I + N A S +       ++ KP TVF+ ++      + L ++ +    
Sbjct: 76  EAYFVTNLMGEIHTANPAASMMLNISPNYLIGKPLTVFVAESHRKAFRNQLQQVRTSSQS 135

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEK 580
              +        E    ++ +   +    +       + DIS+ +Q +  L        +
Sbjct: 136 MGWDVQLQPRHGEPFPAAIAVSPIRDNHGNLTGLRWLISDISQRQQAEA-LRQELAEQHE 194

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            S  KS FL+ VSHE RTPLT I+  SE +  +    L   R   +   I +S + +  +
Sbjct: 195 LSELKSRFLSTVSHEFRTPLTTILSSSE-MLERYSDRLSPERKAVHFQKISQSVDYMTQL 253

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK-RILIRTSFANNIPRILA 699
           + D+L  SK ++ K+  +   V+L E     +  + L A  K RI ++ +  +       
Sbjct: 254 LEDILIYSKADAEKLEFNPTVVNLSEFCQTLVEDLHLEAANKERIQLKCNDDDICGNF-- 311

Query: 700 DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKP 759
           D + ++QI  N+L+NA+ ++P G  +        N+ ++L +RD G+G+   +     +P
Sbjct: 312 DPKLLRQILSNLLTNALKYSPKGDPVDFELNREENQAILL-IRDRGIGIPANDQVHLFEP 370

Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           F +  N+  I   GTGLGL + K  VD + G   + S    GT+  +  PL + +
Sbjct: 371 FHRAQNTGTIN--GTGLGLAIVKKAVDLHQGMISVQSEIDVGTIFTVNLPLLNNA 423


>gi|221133477|ref|ZP_03559782.1| aerobic respiration control sensor protein ArcB [Glaciecola sp.
           HTCC2999]
          Length = 785

 Score =  310 bits (793), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 101/406 (24%), Positives = 179/406 (44%), Gaps = 18/406 (4%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
             K  Q         +E E  D    + +       L SI++A+ D I   N EG     
Sbjct: 124 QRKDAQLEREKVFKELEIEIRDKSEQEIQARRLSTLLRSIIDASPDLIYFRNEEGKFAGC 183

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
           NR   +L G   +++L        ++   + +     E+L  ++  T E   L    + +
Sbjct: 184 NRVAEELTGRTQDELLGLTPHEVYDEELANQVARSDNEVLEKNISVTEELWLLFPDGKRR 243

Query: 538 LLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
              +R +                 D++E  + +       K  EK S  K+ F+A +SHE
Sbjct: 244 YFEMRKVPFFDHEGERLGLLAFGRDMTERMKAE-------KAVEKASKDKTKFIATISHE 296

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           +RTPL  I+G S ++++             + + I  S   + +I ND++D+ K+E  K+
Sbjct: 297 LRTPLNGIVGLSRMLRDTEL----TEEQFTWISTIYASAITLGNIFNDIIDLDKLERDKI 352

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSN 714
            L ++ +SL+   +E  S+++L A +K +   ++    +P  +  D   ++QI  N+L N
Sbjct: 353 ALSYKTLSLETFTAELSSVIELLAADKGLQFVSNIIKPLPDFVQVDGTRLRQILWNMLFN 412

Query: 715 AIHFTPSGGQ-IIISTTHTSNEE---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           A+ FTP G   + +S T   + +   V   ++DTGVG+   +++K    + Q+ +     
Sbjct: 413 AVKFTPKGQVSLSVSATVQDDNKTANVCFDIQDTGVGIPQADIDKIFAMYYQVDHPDHQS 472

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
             GTG+GL + K MVD   G   + S   KGT   I  PL  +  P
Sbjct: 473 ATGTGIGLAICKEMVDRMNGHIEVQSEVGKGTRFLINIPLQISEKP 518



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/184 (13%), Positives = 58/184 (31%), Gaps = 17/184 (9%)

Query: 14  LTSNCKGNTQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENT 73
           L +N K    ++ ++K D   E EK  KE       +        + S    + +D+   
Sbjct: 111 LQNNIKQLNFEIEQRK-DAQLEREKVFKELEIEIRDKSEQEIQARRLSTLLRSIIDASPD 169

Query: 74  FVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNH 132
            ++          +  +  G     +    +  G    +++G+   +V D    +     
Sbjct: 170 LIY----------FR-NEEGKFAGCNRVAEELTGRTQDELLGLTPHEVYDEELANQVARS 218

Query: 133 IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192
             ++L++  +   +  L   +G       ++  +P +    E  G   FG          
Sbjct: 219 DNEVLEKNISVTEELWLLFPDG--KRRYFEMRKVPFFDHEGERLGLLAFG--RDMTERMK 274

Query: 193 PRAL 196
               
Sbjct: 275 AEKA 278


>gi|300694191|ref|YP_003750164.1| sensory histidine kinase in two-component regulatory system
           [Ralstonia solanacearum PSI07]
 gi|299076228|emb|CBJ35542.1| sensory histidine kinase in two-component regulatory system
           [Ralstonia solanacearum PSI07]
          Length = 675

 Score =  310 bits (793), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 95/374 (25%), Positives = 171/374 (45%), Gaps = 20/374 (5%)

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILST-NRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
            +   +L + L+A+   +  ++         N     +FG    ++L +       +   
Sbjct: 155 RVSQQRLLAALQASLISLYDVDNTMHFTWVHNP----VFGLQPHELLGRTVREVFGRRAA 210

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEW 564
           S +     ++++      +E        +  +  + ++  +         +  + DI+E 
Sbjct: 211 SRLTEAGQQVIATGSPTRVEFAFRRRHTQRVVYDVVVMPLRDDTGEIIGLTNAVIDITER 270

Query: 565 KQEK-------NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
           +Q +          S A++ AE+ S  K DFLA VSHE+RTPL A++G+++++  +   P
Sbjct: 271 RQAEARRAQLLEAESRAREEAERASRLKDDFLATVSHELRTPLNAVLGWAQLLAMR---P 327

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
                +      I+RS    + +++DLLD+S I SGK+ L   PV L + +  A   ++ 
Sbjct: 328 YDEATFRRGLEAIERSARTQVHLIDDLLDMSAILSGKVPLEIGPVDLADVLERARETIEP 387

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737
            A +K+I +       +P +  D   +KQ+  N+L+NA+ FTP GG I +S   ++   V
Sbjct: 388 MARQKQIAVDMECQP-VPLLQGDAGRLKQVFWNLLANAVKFTPEGGHIRVSVHASAEGLV 446

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY-IFS 796
              VRDTG+G+    L      F Q   S   R  G GLGL +AK +V+ + G+     S
Sbjct: 447 A-TVRDTGIGIEPTFLPHIFDRFQQADLSSTRRHGGLGLGLAIAKQLVELHHGRITAASS 505

Query: 797 TPAKGTLIEIIFPL 810
               GT + +  PL
Sbjct: 506 GTDLGTTMAVTLPL 519



 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/243 (10%), Positives = 62/243 (25%), Gaps = 13/243 (5%)

Query: 105 TIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLA 164
             G    +++G  + +V            G  +    +       +        V  D+ 
Sbjct: 188 VFGLQPHELLGRTVREVFGRRAASRLTEAGQQVIATGSPTRVEFAFRRR-HTQRVVYDVV 246

Query: 165 ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDI 224
            +P+     E  G     I           A   +L +  S   E  +  S ++ +    
Sbjct: 247 VMPLRDDTGEIIGLTNAVI--DITERRQAEARRAQLLEAESRAREEAERASRLKDDFLAT 304

Query: 225 FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYT 284
            S +   P        + L     + +   +     +  S  + +   +D   ++     
Sbjct: 305 VSHELRTPLN-AVLGWAQLLAMRPYDEATFRRGLEAIERSARTQVHLIDDLLDMSAILSG 363

Query: 285 KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNL--F 342
           K        + +               +      +      ++  P+P      G L   
Sbjct: 364 KVPLEIGPVDLADVL-------ERARETIEPMARQKQIAVDMECQPVPLLQGDAGRLKQV 416

Query: 343 YAN 345
           + N
Sbjct: 417 FWN 419


>gi|261819661|ref|YP_003257767.1| aerobic respiration control sensor protein ArcB [Pectobacterium
           wasabiae WPP163]
 gi|261603674|gb|ACX86160.1| multi-sensor hybrid histidine kinase [Pectobacterium wasabiae
           WPP163]
          Length = 789

 Score =  310 bits (793), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 90/440 (20%), Positives = 181/440 (41%), Gaps = 21/440 (4%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L             L+         L           +    +  + ++ E
Sbjct: 81  EESRQRLSKLVAKLEEMRHRDLELNAQLQENIAQLNQEISDRI-KAEEARVLVMSRLKEE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
                  + ++E +   L S L+A+ D +   N E      NRA+  L G   + ++   
Sbjct: 140 MSRREQAQIELEQQSALLRSFLDASPDLVYYRNEEKEFSGCNRAMELLVGKSQKQLIGLT 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII--KKLPFSSCY 554
                  +    +     ++   ++  T E+  +     +    LR +    ++      
Sbjct: 200 PQDVYAPDIAEKVMETDEKVFRHNVSLTYEQWLVYPDGRKACFELRKVPFYDRMGKRHGL 259

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+ ++ L +        S  K+ F++ +SHE+RTPL  I+G S ++ + +
Sbjct: 260 MGFGRDITERKRYQDALEN-------ASREKTTFISTISHELRTPLNGIVGLSRILLDTQ 312

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                +P   +Y   I  S   + +I ND++++ K E  K+ L  +P+     + +  +L
Sbjct: 313 L----DPEQQKYLKTIHVSAITLGNIFNDVIEMDKQERRKVQLDNQPIDFTGFLVDLENL 368

Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSG-----GQIIIS 728
             L A  K + +       +P+ ++ D   ++QI  N+LSNA+ FTP G     G+I++ 
Sbjct: 369 GGLLAEPKGLKLIMDQHPPLPQKVITDGTRLRQILWNLLSNAVKFTPKGEKGEKGEIVVR 428

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDA 787
             H   + +   V D+G+G+   ELEK    + Q+ +    +   G+G+GL ++K +   
Sbjct: 429 VWHEKGDRLRFEVEDSGMGIPADELEKIFAMYYQVKDQHGGKPATGSGIGLAVSKRLAQN 488

Query: 788 NMGKFYIFSTPAKGTLIEII 807
             G   + ST  KG+   + 
Sbjct: 489 MGGDIQVSSTQGKGSCFTLT 508



 Score = 41.9 bits (97), Expect = 0.50,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 37/124 (29%), Gaps = 5/124 (4%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN-TWYGKTTLWPIE 153
               +  +   +G    ++IG+   DV      +      + + R N +   +  L   +
Sbjct: 177 FSGCNRAMELLVGKSQKQLIGLTPQDVYAPDIAEKVMETDEKVFRHNVSLTYEQWLVYPD 236

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
           G       +L  +P Y R  +  G  GFG           +   +   ++ +        
Sbjct: 237 GRKACF--ELRKVPFYDRMGKRHGLMGFG--RDITERKRYQDALENASREKTTFISTISH 292

Query: 214 HSSV 217
               
Sbjct: 293 ELRT 296



 Score = 41.2 bits (95), Expect = 0.74,   Method: Composition-based stats.
 Identities = 18/228 (7%), Positives = 48/228 (21%), Gaps = 14/228 (6%)

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
           +S + E        L      L       L  + +           ++    ++      
Sbjct: 73  LSVVVEQLEESRQRLSKLVAKLEEMRHRDL--ELNAQLQENIAQLNQEISDRIKAEEARV 130

Query: 300 FEY----LSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKY 354
                               ++   L    +D  P   +           N +  LL   
Sbjct: 131 LVMSRLKEEMSRREQAQIELEQQSALLRSFLDASPDLVYYRNEEKEFSGCNRAMELLVGK 190

Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
                I        L      + + A K +           +      + +         
Sbjct: 191 SQKQLIG-------LTPQDVYAPDIAEKVMETDEKVFRHNVSLTYEQWLVYPDGRKACFE 243

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
                  ++  +     G   +  + +  +  +E    +  + +   S
Sbjct: 244 LRKVPFYDRMGKRHGLMGFGRDITERKRYQDALENASREKTTFISTIS 291


>gi|242241030|ref|YP_002989211.1| aerobic respiration control sensor protein ArcB [Dickeya dadantii
           Ech703]
 gi|242133087|gb|ACS87389.1| multi-sensor hybrid histidine kinase [Dickeya dadantii Ech703]
          Length = 779

 Score =  310 bits (793), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 87/435 (20%), Positives = 171/435 (39%), Gaps = 17/435 (3%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L             L+  Q           I      +    +  + +  E
Sbjct: 81  EESRQRLSRLVAKLEEMRQRDQELNE-QLQGNIGQLNQEISDRIKAEEARLLMVSKLREE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
                  + ++E +   L S L+A+ D +   N        NRA+  L G   + ++   
Sbjct: 140 MARREQAQIELEQQSALLRSFLDASPDLVYYRNENKAFSGCNRAMELLLGKSQKQLIGLT 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII--KKLPFSSCY 554
                       +     ++   ++  T E+        +    +R +    ++      
Sbjct: 200 PKDVYPPEVADKVMETDEKVFRHNVSLTYEQWLEYPDGRKSCFEIRKVPFYDRMGKRHGL 259

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+ ++ L +        S  K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 260 MGFGRDITERKRYQDALEN-------ASREKTTFISTISHELRTPLNGIVGLSRILLDTH 312

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                +    +Y   I  S   + +I ND++++ K E  K+ L  +PV       +  +L
Sbjct: 313 L----DAEQQKYLKTIHVSAITLGNIFNDVIEMDKQERRKVQLDNQPVDFVGFTVDLENL 368

Query: 675 VQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
             L A  K + +       +P  ++ D   ++QI  N++SNA+ FT  G +I I  +   
Sbjct: 369 GGLLAQPKGLQLDVELRQPLPKTVMTDGTRLRQILWNLISNAVKFTQQG-RIAIRVSREQ 427

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMGKF 792
            E +   V D+G+G+   ELEK    + Q+ +    +   GTG+GL ++K +  +  G  
Sbjct: 428 GERLRFEVEDSGMGIPADELEKIFSMYYQVKDQHGGKPATGTGIGLAVSKRLAQSMGGDI 487

Query: 793 YIFSTPAKGTLIEII 807
            + S   KG+   + 
Sbjct: 488 QVTSELGKGSCFVLT 502



 Score = 40.0 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 37/124 (29%), Gaps = 5/124 (4%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN-TWYGKTTLWPIE 153
               +  +   +G    ++IG+   DV      D      + + R N +   +  L   +
Sbjct: 177 FSGCNRAMELLLGKSQKQLIGLTPKDVYPPEVADKVMETDEKVFRHNVSLTYEQWLEYPD 236

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
           G       ++  +P Y R  +  G  GFG           +   +   ++ +        
Sbjct: 237 GRKSCF--EIRKVPFYDRMGKRHGLMGFG--RDITERKRYQDALENASREKTTFISTISH 292

Query: 214 HSSV 217
               
Sbjct: 293 ELRT 296


>gi|295135408|ref|YP_003586084.1| sensory transduction histidine kinase [Zunongwangia profunda
           SM-A87]
 gi|294983423|gb|ADF53888.1| sensory transduction histidine kinase [Zunongwangia profunda
           SM-A87]
          Length = 789

 Score =  310 bits (793), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 110/740 (14%), Positives = 258/740 (34%), Gaps = 48/740 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147
           +D  G + ++++     +G    K + + L  +    +++        L    +    K 
Sbjct: 74  MDIQGNVLKMNQAAKDMLGYDNEKEV-VNLLKLVHSDYVEYTAAAFKQLYHTGSYNNYKA 132

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
            +   +GT     + + A  IY R  +    +G  +      + + +   +  +K+   +
Sbjct: 133 RIITKDGTEKI--VQINASIIYDREGKPIAAQG--VARDITEEIEIKKQLESQNKQLDLI 188

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV-----SSLTEYYAHKDDVLKTEKYPLL 262
            +      S+ +  +    + +       +  +      S+ +    +D+    +   ++
Sbjct: 189 LDNSPIGISLTQTNFKGALKVNKALINMFEYSLEEFNNLSIKDITHPEDNDSSEQLRQMV 248

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF----DEG 318
             +  S    + +   +      K     +++ + +    ++     +         +E 
Sbjct: 249 EGKIDSYTINKRYIKKSGETLWAKTKVAAIRDENGKILYQVATIEDITKEKIAKEKIEES 308

Query: 319 ENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYK-SVDDIEIAGGLSTLLDAPKL- 375
           EN     +        +      +   N  F  L   +   + ++ A   +   +  K  
Sbjct: 309 ENRLSTLIVNLQTGILLEDENRKILLTNTKFCNLFGIEAPPELLKGADCSNAAEENKKYF 368

Query: 376 --SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
              +    +   L R   T I     L        + + +                    
Sbjct: 369 KNPEQFVQRISELLRKKETVIGEELELVNGSIYERSYIPIYH--------EGRYKGHLWS 420

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
             +    +  K  ++ +  +  SI+   + G+  ++    IL  N++ +++ GY  E++L
Sbjct: 421 YDDITIQKNYKESLKAQKEKYSSIIANMNLGLLEVDLNDQILMANQSFTEMSGYSEEELL 480

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS- 552
            K  +                ++    +  +        TK+ KL    +        + 
Sbjct: 481 GKTASDIFLIPESKADFDKNDKVRRKGMSNSY--EVRIKTKDNKLKYWLVSGAPNYDVNG 538

Query: 553 ---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                     DI+E K  + +     K  E+++ H +++   VSH++++PL  I      
Sbjct: 539 KMLGSIGIHLDITEMKLLETQKEQLLKNLEQQNEHLNEYAHIVSHDLKSPLRNISALLSW 598

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
            K      LG    +   + +      +  ++ ++L  S IE G   +  + ++L E VS
Sbjct: 599 TKEDFREKLGEESLMN-LDLMQGKVEKMDHLIENILRYSSIEDGN--IQNQELNLQELVS 655

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP-SGGQIIIS 728
           E I L+  Y  E    I  S    +P I  D   ++Q+  N+LSNA+++     G + I 
Sbjct: 656 EIIELI--YIPEH---ISVSILRKLPIIYGDRTRIQQVFQNLLSNAVNYIDKEKGFVEID 710

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
            T  +       ++D G+G+     ++  K F    N+     + TG+GL + K ++D  
Sbjct: 711 YT-ENTTHYTFSIKDNGIGIKKEHHQRIFKIF----NALGTHEKSTGVGLSIVKKVIDLY 765

Query: 789 MGKFYIFSTPAKGTLIEIIF 808
            G+ ++ S   KGT+     
Sbjct: 766 EGEIWLDSEVGKGTVFFFSL 785



 Score = 65.8 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 20/135 (14%), Positives = 45/135 (33%), Gaps = 3/135 (2%)

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
           ++ +  QL  +     D   I++ +G +L  N+A   + GY  E  +       +  +  
Sbjct: 53  LKEKTSQLEGVFVNIIDAYIIMDIQGNVLKMNQAAKDMLGYDNEKEVV-NLLKLVHSDYV 111

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL--TMHDISEW 564
                   ++         +   +     EK++ +   I         +      DI+E 
Sbjct: 112 EYTAAAFKQLYHTGSYNNYKARIITKDGTEKIVQINASIIYDREGKPIAAQGVARDITEE 171

Query: 565 KQEKNKLSHAKKIAE 579
            + K +L    K  +
Sbjct: 172 IEIKKQLESQNKQLD 186



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 46/124 (37%), Gaps = 3/124 (2%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
            +D +  +   ++   +  G    +++G    D+  I     +    D ++R+       
Sbjct: 454 EVDLNDQILMANQSFTEMSGYSEEELLGKTASDIFLIPESKADFDKNDKVRRKGMSNSYE 513

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF--GIVHVNRVDNDPRALGKRLDKKFS 205
                +   L   + ++  P Y  N +  G  G    I  +  ++     L K L+++  
Sbjct: 514 VRIKTKDNKLKYWL-VSGAPNYDVNGKMLGSIGIHLDITEMKLLETQKEQLLKNLEQQNE 572

Query: 206 HLHE 209
           HL+E
Sbjct: 573 HLNE 576


>gi|24216361|ref|NP_713842.1| two-component hybrid sensor and regulator [Leptospira interrogans
           serovar Lai str. 56601]
 gi|45656450|ref|YP_000536.1| histidine kinase [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
 gi|24197641|gb|AAN50860.1|AE011521_6 two-component hybrid sensor and regulator [Leptospira interrogans
           serovar Lai str. 56601]
 gi|45599685|gb|AAS69173.1| histidine kinase [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
          Length = 696

 Score =  310 bits (793), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 94/393 (23%), Positives = 172/393 (43%), Gaps = 21/393 (5%)

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE-D 491
              E    +  +  +     +L SIL+     I  ++        N + +KL       +
Sbjct: 159 RIYEIFSIKNKEILLNSVHSRLDSILKTIPQAIIFMDSGTGKTWINESAAKLLSLSEGGE 218

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI-----TLGSTKEEKLLSLRIIIK 546
           +     +  + +   S +N     +        +         + +  E+K+  +  ++ 
Sbjct: 219 VSSWKVSTSMTELIQSAVNQKEIFLEMNRNLSNMNLEKFSTQWMFTDPEKKVFEVTSLLL 278

Query: 547 KLPFSSCYSLTMHDISEWKQEKN-------KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
               +        DI+ +  ++         L    +IA++E+  K+ F++ +SHEIRTP
Sbjct: 279 PGKTAPGRLWFFEDITSFHSQQETLALLNQALKEKSEIAQQENQAKTVFISNISHEIRTP 338

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           +T I+G +E++ N       NP   +    I RSG+ +L IVN LLD SK ++GK+ L  
Sbjct: 339 MTGILGITELLLNTPL----NPDQKDSLELIQRSGDKLLKIVNHLLDFSKADTGKIELES 394

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHF 718
            P ++ E +++ +SL++    + +  +   F  N P++L  D   + QI  N++SNA  F
Sbjct: 395 IPFNMQELLNDLVSLLRTEILKNKNELNILFPPNFPKLLKGDPVRIGQILTNLVSNATKF 454

Query: 719 TPSGG-QIIISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T  G  ++       +N E+  R  V DTG+G+   +     +PF Q   S      GTG
Sbjct: 455 TKEGTVEVGFHILEKTNSELSFRTWVFDTGIGIPPTKFNSVFEPFVQSDKSITRHFGGTG 514

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           LGL + K +++   GK ++ S P  GT      
Sbjct: 515 LGLSITKKLIELMGGKIHVESQPGIGTRFWFEL 547


>gi|209966158|ref|YP_002299073.1| histidine protein kinase DivJ [Rhodospirillum centenum SW]
 gi|209959624|gb|ACJ00261.1| histidine protein kinase DivJ [Rhodospirillum centenum SW]
          Length = 529

 Score =  310 bits (793), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 105/506 (20%), Positives = 201/506 (39%), Gaps = 27/506 (5%)

Query: 323 PETVDKCPIPFFVY-----SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
            + V+  P   FV+           YA+P +  L    +      A     L+       
Sbjct: 16  AQLVESLPAALFVFARHSARRHRFLYASPGWEELCGMPATSVPGRAQVSYDLVHPED--- 72

Query: 378 NNAIKPVMLYRSDRTCIAASA-RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
               +  +    D             ++   +    +      +       +   G+  +
Sbjct: 73  ----RAALRAAIDGARPPGPWQHECRVRRGGDGWRWLRIRARPQVQPDG-AVHWYGLVVD 127

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAII----NREGIILSTNRAVSKLFGYPVEDI 492
               +  + ++     Q     E   + +  +    +        +    +L G   E +
Sbjct: 128 ITAEKQARDRLAASEAQFRGYFENAPEALFTVEVREDGSFAFGDLSPTHERLTGLRQEML 187

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
             +     L       +  +    ++       E+     T      ++ +    +   S
Sbjct: 188 AGRTPEEVLPPEVADEVLGHYRACVAGGEVMRYEESIPLPTGTRLWETVLV---PIRDGS 244

Query: 553 CYSLTM----HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
              + +     DI+  +  +  L  A + AE+ S  KS+FL+  SHE+RTPL AI+GF+E
Sbjct: 245 GRIVRLLGGSTDITARRLHEEGLRAAAREAEEASRAKSEFLSGTSHELRTPLNAILGFTE 304

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
            +    +GPL  P+  E    I  +G  +LD+VNDLLD++++E+ ++ L  E V      
Sbjct: 305 ALTAGIYGPLS-PKQAEAVTVIRDAGAHLLDLVNDLLDLARVEARRLPLDPEAVDAALVA 363

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
            E   ++ L A +  + +  + A  +P + AD   ++QI  N+ +NA+ FT  GGQ+ + 
Sbjct: 364 REVTEMLALQAAQNGVALSCTAAAGLPPVWADPLRLRQIVTNLAANAVKFTLRGGQVRLE 423

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI-PNSQQIRGEGTGLGLPLAKAMVDA 787
                   ++LRVRDTG+G+   ++++ M+PF  +   +     EG GLGL L +A+V+ 
Sbjct: 424 LEPAPGGGLLLRVRDTGIGIRAEDMDRLMQPFQTLRDPAGPRPNEGLGLGLALTRALVEQ 483

Query: 788 NMGKFYIFSTPAKGTLIEIIFPLYDT 813
           + G   + S    GT + +  P    
Sbjct: 484 HGGTMRLESRHRAGTTVTVTLPAAPA 509



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/265 (10%), Positives = 61/265 (23%), Gaps = 21/265 (7%)

Query: 64  NTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMR--LCDV 121
               ++S    +F     + R              S    +  G  A  + G      D+
Sbjct: 15  PAQLVESLPAALFVFARHSAR-------RHRFLYASPGWEELCGMPATSVPGRAQVSYDL 67

Query: 122 SDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF 181
                        D  +    W  +  +    G + +  + + A P    +        +
Sbjct: 68  VHPEDRAALRAAIDGARPPGPWQHECRVRR--GGDGWRWLRIRARPQVQPDGAV---HWY 122

Query: 182 GIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHS-------SVEKEKYDIFSQQSPPPHL 234
           G+V     +   R      + +F    E                    D+         L
Sbjct: 123 GLVVDITAEKQARDRLAASEAQFRGYFENAPEALFTVEVREDGSFAFGDLSPTHERLTGL 182

Query: 235 RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294
           R +       E     +   +   +         +   E+   +       +     +++
Sbjct: 183 RQEMLAGRTPEEVLPPEVADEVLGHYRACVAGGEVMRYEESIPLPTGTRLWETVLVPIRD 242

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGE 319
            S      L      +     +EG 
Sbjct: 243 GSGRIVRLLGGSTDITARRLHEEGL 267



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/226 (10%), Positives = 52/226 (23%), Gaps = 6/226 (2%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGK 146
             D      ++S    +  G     + G    +V      D    H    +        +
Sbjct: 162 REDGSFAFGDLSPTHERLTGLRQEMLAGRTPEEVLPPEVADEVLGHYRACVAGGEVMRYE 221

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
            ++    GT L+  + +   PI   +      R  G               +   ++   
Sbjct: 222 ESIPLPTGTRLWETVLV---PIRDGSGRIV--RLLGGSTDITARRLHEEGLRAAAREAEE 276

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
               K    S    +              +   +         +   +  +    L    
Sbjct: 277 ASRAKSEFLSGTSHELRTPLNAILGFTEALTAGIYGPLSPKQAEAVTVIRDAGAHLLDLV 336

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
           + L +        L    +      +     E     + +N  +LS
Sbjct: 337 NDLLDLARVEARRLPLDPEAVDAALVAREVTEMLALQAAQNGVALS 382


>gi|207739510|ref|YP_002257903.1| composite two-component transcriptional regulatory protein (sensor
           histidine kinase and response regulator hybrid)
           [Ralstonia solanacearum IPO1609]
 gi|206592889|emb|CAQ59795.1| composite two-component transcriptional regulatory protein (sensor
           histidine kinase and response regulator hybrid)
           [Ralstonia solanacearum IPO1609]
          Length = 675

 Score =  310 bits (793), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 96/378 (25%), Positives = 170/378 (44%), Gaps = 22/378 (5%)

Query: 446 KMEIE--VMQLCSILEATSDGIAIINREGIILST-NRAVSKLFGYPVEDILRKPFTVFLE 502
           + +      +L + L+A+   +  ++         N     +FG    ++L +       
Sbjct: 151 ETQQRVSQQRLLAALQASPISLYDVDNTMHFTWVHNP----VFGLQPHELLGRTVREVFG 206

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHD 560
           +   S +      +++      +E        +  +  + ++  +         +    D
Sbjct: 207 RRAASRLTEAGQRVIATGSPTRVEFAFRRRHTQRVVYDVVVMPLRDDTGEIIGLTNAAID 266

Query: 561 ISEWKQEK-------NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
           I+E +Q +          S A++ AE+ S  K DFLA VSHE+RTPL A++G+++++  +
Sbjct: 267 ITEHRQTEARRTQLLEAESRAREEAERASRLKDDFLATVSHELRTPLNAVLGWAQLLAMR 326

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
              P     +      I+RS    + +++DLLD+S I SGK+ L   PV L + +  A  
Sbjct: 327 ---PYDEAMFRRGLEAIERSARTQVHLIDDLLDMSAILSGKVPLEIGPVDLADVLERARE 383

Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
            ++  A +K+I I T +   +P +  D   +KQ+  N+L+NA+ FTP GG I +    + 
Sbjct: 384 TIEPMARQKQIAIDTEYPP-VPLLQGDAGRLKQVFWNLLANAVKFTPEGGHIRVCVQASP 442

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
              V   VRDTG+G+    L      F Q   S   R  G GLGL +AK +V+ + G+  
Sbjct: 443 EGLVA-TVRDTGIGIEPTFLPHVFDRFQQADLSSTRRHGGLGLGLAIAKQLVELHHGRIT 501

Query: 794 IFST-PAKGTLIEIIFPL 810
             S     GT + +  PL
Sbjct: 502 AASNGANLGTTMAVTLPL 519



 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/245 (11%), Positives = 64/245 (26%), Gaps = 17/245 (6%)

Query: 105 TIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLA 164
             G    +++G  + +V            G  +    +       +        V  D+ 
Sbjct: 188 VFGLQPHELLGRTVREVFGRRAASRLTEAGQRVIATGSPTRVEFAFRRR-HTQRVVYDVV 246

Query: 165 ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDI 224
            +P+     E  G     I           A   +L +  S   E  +  S ++ +    
Sbjct: 247 VMPLRDDTGEIIGLTNAAI--DITEHRQTEARRTQLLEAESRAREEAERASRLKDDFLAT 304

Query: 225 FSQQSPPPHLRMK--NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQ 282
            S +   P   +    ++ ++  Y                 ++   + +  D   I   +
Sbjct: 305 VSHELRTPLNAVLGWAQLLAMRPYDEAMFRRGLEAIERSARTQVHLIDDLLDMSAILSGK 364

Query: 283 YTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNL- 341
              +     L +  + + E +         A   E            P+P      G L 
Sbjct: 365 VPLEIGPVDLADVLERARETIEPMARQKQIAIDTEYP----------PVPLLQGDAGRLK 414

Query: 342 -FYAN 345
             + N
Sbjct: 415 QVFWN 419


>gi|298490158|ref|YP_003720335.1| multi-sensor signal transduction histidine kinase ['Nostoc azollae'
           0708]
 gi|298232076|gb|ADI63212.1| multi-sensor signal transduction histidine kinase ['Nostoc azollae'
           0708]
          Length = 669

 Score =  310 bits (793), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 82/428 (19%), Positives = 174/428 (40%), Gaps = 53/428 (12%)

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINK--RKMEIEVMQLCSILEATSDGIAIINREGI 473
           I      +  E +       E ++    +   ++  E  +L +++   +DG  +I+    
Sbjct: 238 IDLPLGGELGELIFSFNEMAERLERYEEQNIEELTAEKAKLETLVSTIADGAVLIDNNMQ 297

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
           I+  N    ++F +   D++       L Q+    +   L ++ + +     E       
Sbjct: 298 IILVNPTARRIFAWEGVDVVGSNLLHNLPQSIQIEITRTLYKMAAGECESA-EFRIPLQQ 356

Query: 534 KEEKLLSLRIIIK---KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
             ++ + + +      +       ++T+ DI+                 + +  KS F++
Sbjct: 357 PTKRTIRILLTTVLNLQRESIKGIAITVQDITR--------------EVELNEAKSQFIS 402

Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650
            +SHE+RTPL  I  + E + +     LG     E+   ++   + +  +VND+LD+SK+
Sbjct: 403 NISHELRTPLFNIKTYIETLHD-YGEDLGAEERQEFLETVNHETDRLTRLVNDVLDLSKL 461

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710
           ESG+   +F+ V L +A+ + +   QL A +K + +    A N+P ++ +   + Q+  N
Sbjct: 462 ESGR-TYNFDGVDLGQALEQTLRTYQLNAKDKGLELVQEVAPNLPLVIGNYDLLLQVFGN 520

Query: 711 ILSNAIHFTPSGGQIIIST------------------------------THTSNEEVILR 740
           ++ NA+ FT +GG++ I                                 H     V + 
Sbjct: 521 LIGNALKFTKAGGKVAIRAYQLHPHPNFALSSPETDLVETENHTHATLNEHNHRSRVRIE 580

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           + DTG+G+   + +     F ++ N +    EGTGLGL + + ++  +  +  + S    
Sbjct: 581 ISDTGIGIAPEDQQAIFDRFFRVEN-RVHTLEGTGLGLSIVRNIMQRHHSQVNLVSEVGV 639

Query: 801 GTLIEIIF 808
           GT      
Sbjct: 640 GTTFWFDL 647


>gi|162437479|dbj|BAF95556.1| cdsS [Pseudoalteromonas piscicida]
          Length = 772

 Score =  310 bits (793), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 74/400 (18%), Positives = 173/400 (43%), Gaps = 25/400 (6%)

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
              + +  E  + +  ++++  + M L SI++++ D     +  G+    N+    + G 
Sbjct: 126 RAIDELRKEIAERKKTQQELAQQGMLLRSIVDSSPDLFYYRDENGVFAGCNKMFELVMGK 185

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
             E+++ K       +     +    +++       TL+        E +     +    
Sbjct: 186 SSEELIGKSVEQIYSEQYLPKVLETDSQVSETQQPLTLDVEYPV---EGEPRWFEMRKLP 242

Query: 548 LPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
                           DI+  K+ +  L             K  F+A +SHE+RTPL  I
Sbjct: 243 FINDKGEYIGLLAFGRDITSRKEAEQALET-------AYKDKGKFIATLSHELRTPLNGI 295

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +G + ++ +         +   + N +  S   + +I ND++D+ KI+  ++++  + ++
Sbjct: 296 VGLTRMMLDTDLTA----QQKSWCNTVFSSAETLGNIFNDIIDLDKIDREQLDIATDSIN 351

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA--DLRSVKQIALNILSNAIHFTPS 721
           + + +++ ++   L A++K +    + +  I  + A  D   ++Q+  N+++NA+ FT  
Sbjct: 352 VSDFINDVVNFAGLIADQKGLEFTINRS-GILDVYALLDPTRLRQVLWNLINNAVKFTHK 410

Query: 722 GGQIIISTTHT---SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
           G  + +            + + V DTG+G++  +LE+  + + + P++      G+G+GL
Sbjct: 411 G-NVTLECRRENRDDGPWLTISVIDTGMGISEDQLERIFEMYYKAPDASGSNAIGSGIGL 469

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
            + KA+V A  G   + S   KG+  ++  PL   + P +
Sbjct: 470 AVTKALVQAMKGTIAVTSQEGKGSRFDVEIPLQLCNAPKE 509



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/122 (12%), Positives = 36/122 (29%), Gaps = 5/122 (4%)

Query: 79  IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK 138
                 F +  D +G     ++     +G  + ++IG  +  +    ++         + 
Sbjct: 157 DSSPDLFYYR-DENGVFAGCNKMFELVMGKSSEELIGKSVEQIYSEQYLPKVLETDSQVS 215

Query: 139 RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
                      +P+EG       ++  LP  +   E+ G   FG         +     +
Sbjct: 216 ETQQPLTLDVEYPVEGEPR--WFEMRKLPFINDKGEYIGLLAFG--RDITSRKEAEQALE 271

Query: 199 RL 200
             
Sbjct: 272 TA 273


>gi|186475127|ref|YP_001856597.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia phymatum STM815]
 gi|184191586|gb|ACC69551.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia phymatum STM815]
          Length = 1485

 Score =  310 bits (793), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 121/601 (20%), Positives = 225/601 (37%), Gaps = 34/601 (5%)

Query: 232  PHLRMKNKVS-SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG 290
              +R  + V  ++    A    ++      +  SE   + ++                  
Sbjct: 480  GTVREADPVGFAVRADLAPLAGLIDRALLAMPASEHQRIHQKWVTGEGRRRGGWSVTALR 539

Query: 291  TLQNNSKESFEYLSHRNH-----------PSLSAYFDEGENLTPETVDKCPIPFFVYSH- 338
             L      +   L                       +   N     ++  P P       
Sbjct: 540  LLPVLIGIAVILLLTLRAYVLLQREVARRERTERELESQLNFQQTMMEMVPYPLVAKDLQ 599

Query: 339  GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398
            G     N ++   T  +     E   G ++        +N+     +   + ++  A   
Sbjct: 600  GRYIAVNRAYEEATGLRR----ERVIGRTSADVHAWGEENSLRLEQLSRSALQSGSATQI 655

Query: 399  RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458
             L     + ++   +  +     +     +   G   +  D R  +        +L  + 
Sbjct: 656  ELAFEDCDGDSRHGLFCVCVCD-DADGAPLCLLGTLVDITDIRRAEMLASETQRRLVDVT 714

Query: 459  EATSDGIA----IINREGIILSTNRAVSKLFGYPVEDILRKPFTVF--LEQNTPSVMNHY 512
             +    +      ++     L        L GY    ++R     F  +  +    +   
Sbjct: 715  SSLPAVVFQLRRGLDGAYSFLYVGGDTEHLLGYDSAALMRSAALDFGTIFADDRPGVVAA 774

Query: 513  LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-CYSLTMHDISEWKQEKNKL 571
            L     L     LE        E++ +   +  ++ P  +  +S    D S  +   ++L
Sbjct: 775  LGRSAELSEPLHLEFRINCP-AEQRWVRAELAPRREPSGATVWSGYWVDASIERLRADEL 833

Query: 572  SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
            +HA+ +AE  S  K DFLA +SHEIRTP+  ++G  EV++  R     +    E    I 
Sbjct: 834  AHARDLAEAASRAKDDFLAMMSHEIRTPMNGVLGLVEVLERTRL----DADQGEMLGMIH 889

Query: 632  RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
             S   +L I++DLLD SKIE+G++ +  EP+ L + V  A+ L+   A+EK + +R    
Sbjct: 890  ESAGALLQILDDLLDYSKIEAGRLTIESEPIDLRDLVDTAVGLLAGRAHEKGLKVRVDVD 949

Query: 692  NNIP-RILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDTGVG 747
              +   +  D   ++QI  N+L NAI FTP G    Q+ ++  + S + V + V DTG+G
Sbjct: 950  PQVAATLRGDSVRLRQILFNLLGNAIKFTPQGEVDVQVQVAEQNASGQTVEITVDDTGIG 1009

Query: 748  MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
            +      +  +PF Q  +S   R  GTGLGL + + +V    G   ++STP +GT + + 
Sbjct: 1010 IAPDVQARLFEPFVQAESSTTRRFGGTGLGLTICRKLVALMGGTLSLYSTPGEGTRMTLR 1069

Query: 808  F 808
             
Sbjct: 1070 L 1070



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/386 (10%), Positives = 98/386 (25%), Gaps = 32/386 (8%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDV---SDILHIDPNNHIGDLLKRQNTWYGK 146
           D  G    ++    +  G    ++IG    DV    +   +         L+  +    +
Sbjct: 597 DLQGRYIAVNRAYEEATGLRRERVIGRTSADVHAWGEENSLRLEQLSRSALQSGSATQIE 656

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRG--FGIVHVNRVDNDPRALGKRLDKKF 204
                 +G + +    +        +       G    I  + R +       +RL    
Sbjct: 657 LAFEDCDGDSRHGLFCVCVC--DDADGAPLCLLGTLVDITDIRRAEMLASETQRRLVDVT 714

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
           S L  +           Y          HL   +  + +         +   ++  ++ +
Sbjct: 715 SSLPAVVFQLRRGLDGAYSFLYVGGDTEHLLGYDSAALMRSAALDFGTIFADDRPGVVAA 774

Query: 265 EESSLPEQEDFH-----TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
              S    E  H          Q   +      +  S     +  +    S+     +  
Sbjct: 775 LGRSAELSEPLHLEFRINCPAEQRWVRAELAPRREPSGA-TVWSGYWVDASIERLRADEL 833

Query: 320 NLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
               +  +                A   FL +  ++    +    GL  +L+  +L  + 
Sbjct: 834 AHARDLAEAAS------------RAKDDFLAMMSHEIRTPMNGVLGLVEVLERTRLDADQ 881

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
                M++ S    +     L          L +   P +  +     +        +  
Sbjct: 882 GEMLGMIHESAGALLQILDDLLDYSKIEAGRLTIESEPIDLRDLVDTAVGLLAGRAHEKG 941

Query: 440 TRIN-------KRKMEIEVMQLCSIL 458
            ++           +  + ++L  IL
Sbjct: 942 LKVRVDVDPQVAATLRGDSVRLRQIL 967



 Score = 44.2 bits (103), Expect = 0.083,   Method: Composition-based stats.
 Identities = 26/241 (10%), Positives = 58/241 (24%), Gaps = 11/241 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D       +  +    +G  +  ++     D   I   D    +  L +          
Sbjct: 728 LDGAYSFLYVGGDTEHLLGYDSAALMRSAALDFGTIFADDRPGVVAALGRSAELSEPLHL 787

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
            + I        +     P    +        +    + R+  D  A  + L +  S   
Sbjct: 788 EFRINCPAEQRWVRAELAPRREPSGATVWSGYWVDASIERLRADELAHARDLAEAASRAK 847

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           +      S E             P   +   V  L       D                 
Sbjct: 848 DDFLAMMSHE----------IRTPMNGVLGLVEVLERTRLDADQGEMLGMIHESAGALLQ 897

Query: 269 LPEQEDFHT-INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
           + +    ++ I   + T +     L++    +   L+ R H        + +     T+ 
Sbjct: 898 ILDDLLDYSKIEAGRLTIESEPIDLRDLVDTAVGLLAGRAHEKGLKVRVDVDPQVAATLR 957

Query: 328 K 328
            
Sbjct: 958 G 958


>gi|322804613|emb|CBZ02165.1| two-component sensor histidine kinase [Clostridium botulinum H04402
           065]
          Length = 617

 Score =  310 bits (793), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 87/362 (24%), Positives = 161/362 (44%), Gaps = 10/362 (2%)

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLF-GYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           ++E   D I I  ++  I+  N + S+L       ++       F+ +     + + L  
Sbjct: 222 LIENARDAIIIHRKD-KIVFANESASELLICNNNNELQDININNFILKEEQKKIRNKLEL 280

Query: 516 ILSLDLRQTLEKITLGSTKEEKL-LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA 574
           +          +  + + K EK+ +                  + DI+  KQ +      
Sbjct: 281 VYKNKRDIVCVEQVIQNNKREKINVESISTYIIYNNKPAILSILRDITSQKQVEKLQKDV 340

Query: 575 KKIAEKESSHK------SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
           +K  E  +  +      +DFLA +SHE++TPL  I    +++   +       +  +Y  
Sbjct: 341 EKNIELLNESREYNKLITDFLANISHELKTPLNVIFTAVQILDLYKKDAKSYDKKEQYIK 400

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I ++   ++ ++N+LLD +K++SG + L+    ++   V E    V  YA  K I I  
Sbjct: 401 VIKQNCYRLMRLINNLLDTTKLDSGYLKLNLVNCNIVNLVEEITLSVVYYAESKNINIIF 460

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748
                   +  D   +++I LN+LSNAI FT SGG I ++     +  +I+ V+DTG+G+
Sbjct: 461 DTDVEEKIMAVDPDKIERIVLNLLSNAIKFTGSGGNIYVTVKDFEDN-IIISVKDTGIGI 519

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
              ++E     F Q+  + +   EG+G+GL L K+ V+ + G   I S   KG+   I  
Sbjct: 520 PEDKIENIFDRFVQVDKTLRRNKEGSGIGLYLVKSFVNMHEGTIDIQSEIGKGSEFIINI 579

Query: 809 PL 810
           P+
Sbjct: 580 PV 581


>gi|220920746|ref|YP_002496047.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium nodulans ORS 2060]
 gi|219945352|gb|ACL55744.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium nodulans ORS 2060]
          Length = 605

 Score =  310 bits (793), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 104/355 (29%), Positives = 180/355 (50%), Gaps = 14/355 (3%)

Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528
           +R G +L  +R   +L G   + +L +     +  +        +++  SLD   T++  
Sbjct: 221 DRNGGVLQASRGAIRLAGASPQSLLGRGLLGRVHVSDRPAFLKAISDAASLDGPVTVQFR 280

Query: 529 TLGSTKE----EKLLSLRIIIKKLPFSSC-------YSLTMHDISEWKQEKNKLSHAKKI 577
                       +++   +   ++P  +              D+SE  +   +L  A+  
Sbjct: 281 LHADLPASGEPGRVIWAEMRAHRVPAGAGAVPGQAAVVAVTRDVSEHHRHAAELDRARAE 340

Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
           AE+  + KS FLA VSHE+RTPL AIIGFSE++  +    L   R  EYA  I  SG  +
Sbjct: 341 AERADAVKSRFLAVVSHELRTPLNAIIGFSEMLSAEAGLTLPVERQREYAVIIQSSGRHL 400

Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697
           L++VN LLD+++I+SG  +   EP  +   V+    L+QL A++  + +      ++P +
Sbjct: 401 LEVVNALLDLTRIQSGSFDFAPEPFDIRAVVNGCCDLMQLRADQVGVELLRDVPRDLPEL 460

Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757
            AD R+ +Q+ +N+LSNA+ FTP GG++ +S    + + + L V DTG+G+   +L +  
Sbjct: 461 TADPRACRQMLINLLSNAVKFTPRGGRVTVSVR-QAYDRIELSVTDTGIGIAEADLPRLG 519

Query: 758 KPFGQIP--NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            PF Q     +     EGTGLGL + + +V  + G+  + S+ A+GT + +  PL
Sbjct: 520 DPFFQAGDAAAYARMHEGTGLGLSVVRGLVGLHDGEMTLESSVARGTRVVVALPL 574


>gi|86747671|ref|YP_484167.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           HaA2]
 gi|86570699|gb|ABD05256.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           HaA2]
          Length = 1053

 Score =  310 bits (793), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 105/680 (15%), Positives = 211/680 (31%), Gaps = 63/680 (9%)

Query: 170 SRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS 229
            R+REF    GF     +RV +D  A    LD K +    I+          +       
Sbjct: 239 DRSREF----GFDFGRPSRVQDDFPAFAALLDGKDTTPRVIEDRTGQRFGAGWGWVRLAD 294

Query: 230 ----------PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTIN 279
                     P   L         +        VL         ++  + P      ++ 
Sbjct: 295 GPTIGVIEMRPYQSLTSVQTAVRNSTLTGGAVAVLVAMLMAFPLAKSLTRPLVRITRSVQ 354

Query: 280 LNQYTKKQYFGT-------LQNNSKESFEYLSHRNHPSLSAYFDEGENL---TPETVDKC 329
                +K            L   +       + R   +L+   +E   +      T+D  
Sbjct: 355 AFARGEKLELAPGGGQEIKLLAEAFSQMTREAERKAIALAEEAEERSRIAGVLQNTIDNM 414

Query: 330 PIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388
             P  V    G +   NP+   L    S   +                      P++   
Sbjct: 415 VDPVLVADARGMVMLTNPAARDLFGTLSGVGLLNTTRSFDRYYPDGTPLPPDQSPLLRAY 474

Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
              T +     +  I  +R + L     P    ++  EN     +  +   T+  ++ + 
Sbjct: 475 RGETIVNFEFMVQPIGSDRRSYLIANGRPL--RSETGENQGAVMVYHDITQTKTAEKALR 532

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
                  +I++   D    I+    I   +    ++FG+   + + +     +       
Sbjct: 533 RSEQMARAIIDTALDAFVQIDALATITEWSPHAEEMFGWRRAEAIGRNVFKLIIPPDQFE 592

Query: 509 MN-HYLTEILS--LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS--LTMHDISE 563
                  +  S                      + L + +  L     +     + D++E
Sbjct: 593 QRTEEFKQFASTLGRDSSGFRVEIESIRNNGTPIPLEVAMTALYRDGSFVINAFLRDLTE 652

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
               + +L  ++K+              ++H+    LT I G  ++I +   G    P  
Sbjct: 653 KIAFEEQLRQSQKM-----ESIGQLTGGIAHDFNNMLTVITGTIDIISD---GVAEQPHL 704

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
              A  I  + +   ++   LL  ++    K  L  +   ++  V+   SL++     ++
Sbjct: 705 ANIAKLISEAADRGAELTRLLLAFAR----KQPLRPDDTDVNALVAGLQSLLRPTL-GEQ 759

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT------------- 730
           I + TS A+N+  I  D   ++   +N+  NA    P+GG++ + T              
Sbjct: 760 IEVETSLADNVWPIYVDRGQLESALVNLAVNARDAMPNGGKLTLETCNIVVDQEFARRLG 819

Query: 731 -HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
                  V++ + D+G G+      K   PF    +     G+GTGLGL +    +  + 
Sbjct: 820 NVEVGSYVMIAITDSGCGIPEAIRGKVFDPFFTTKD----IGKGTGLGLSMVYGFIKQSG 875

Query: 790 GKFYIFSTPAKGTLIEIIFP 809
           G   ++S    GT   +  P
Sbjct: 876 GHITLYSEEGLGTTFRLYLP 895



 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/273 (11%), Positives = 60/273 (21%), Gaps = 11/273 (4%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMR-LCDVSDILHIDPNNHIGDLLK---RQNTW 143
            IDA   + E S    +  G    + IG      +      +              +++ 
Sbjct: 551 QIDALATITEWSPHAEEMFGWRRAEAIGRNVFKLIIPPDQFEQRTEEFKQFASTLGRDSS 610

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +  +  I      +P+++A   +Y R+  F        +             ++  K 
Sbjct: 611 GFRVEIESIRNNGTPIPLEVAMTALY-RDGSFV---INAFLRDLTEKIAFEEQLRQSQKM 666

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
            S                  I            +    +       +      E   LL 
Sbjct: 667 ESIGQLTGGIAHDFNNMLTVITGTIDIISDGVAEQPHLANIAKLISEAADRGAELTRLLL 726

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
           +     P + D   +N      +           E    L+    P           L  
Sbjct: 727 AFARKQPLRPDDTDVNALVAGLQSLLRPTLGEQIEVETSLADNVWPIYVDRGQLESALVN 786

Query: 324 ETV---DKCPIPFFVYSHGNLFYANPSFLLLTK 353
             V   D  P    +         +  F     
Sbjct: 787 LAVNARDAMPNGGKLTLETCNIVVDQEFARRLG 819



 Score = 43.9 bits (102), Expect = 0.10,   Method: Composition-based stats.
 Identities = 29/372 (7%), Positives = 83/372 (22%), Gaps = 23/372 (6%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIG---MRLCDVSDILHIDPNNH--IGDLLKRQNTWY 144
           DA G +   +       G  +   +                 P +   +    + +    
Sbjct: 422 DARGMVMLTNPAARDLFGTLSGVGLLNTTRSFDRYYPDGTPLPPDQSPLLRAYRGETIVN 481

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            +  + PI G++    +     P+ S   E  G     + H            +R ++  
Sbjct: 482 FEFMVQPI-GSDRRSYLIANGRPLRSETGENQGA--VMVYHDITQTKTAEKALRRSEQMA 538

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
             + +              I             R    +           D  +      
Sbjct: 539 RAIIDTALDAFVQIDALATITEWSPHAEEMFGWRRAEAIGRNVFKLIIPPDQFEQRTEEF 598

Query: 262 LTSEESSLPEQEDFHTI------NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
                +   +   F         N      +     L  +               ++   
Sbjct: 599 KQFASTLGRDSSGFRVEIESIRNNGTPIPLEVAMTALYRDGSFVINAFLRDLTEKIAFEE 658

Query: 316 DEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
              ++   E++ +         +  L     +  +++   +         ++ L+     
Sbjct: 659 QLRQSQKMESIGQLTGGIAHDFNNMLTVITGTIDIISDGVAEQ--PHLANIAKLISEAAD 716

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
                 + ++ +   +        ++ +       L     P        E    + + P
Sbjct: 717 RGAELTRLLLAFARKQPLRPDDTDVNALV----AGLQSLLRPTLGEQIEVETSLADNVWP 772

Query: 436 EDVDTRINKRKM 447
             VD    +  +
Sbjct: 773 IYVDRGQLESAL 784


>gi|254460391|ref|ZP_05073807.1| sensor protein GacS [Rhodobacterales bacterium HTCC2083]
 gi|206676980|gb|EDZ41467.1| sensor protein GacS [Rhodobacteraceae bacterium HTCC2083]
          Length = 718

 Score =  310 bits (793), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 100/432 (23%), Positives = 186/432 (43%), Gaps = 12/432 (2%)

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
           A +      ++R      A L +         A       +  +      ++       D
Sbjct: 8   ADERRARLAAERLLEMKEAELFSANRKLG-LHARALSDRIERTEAEVANVRSENRQVKSD 66

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
             +  +K+E+   +L   + A  DG A  N +  ++  N A   +F    +      +  
Sbjct: 67  LSVAHQKVEVAERRLWHSIRAIRDGFAFFNADNEMVGANDAYLGVFDNLEDMKPGVTYPE 126

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YS 555
            L   T   +     +       + LE+    + K   +     +  KL           
Sbjct: 127 MLLILTEEGIVDTEDQNPIEWRAEMLERWHAPNPKPRVIKLWNGLYAKLIDQRGPDGDVV 186

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
               +I++    +N+L  A+  AE  +  KS FLA +SHEIRTP+  I+G ++++     
Sbjct: 187 SLALNITDTVLYENQLKKARYQAETANRAKSAFLANMSHEIRTPMNGIVGMADLLSETGL 246

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
           G         + + I  SG  +L I+ND+LD SKIE+ ++ L       ++ + E + L+
Sbjct: 247 G----EEQRLFVDTIRNSGEALLTIINDVLDYSKIEAERLELRPTTFDFEQCIHEVMRLL 302

Query: 676 QLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
           Q  A +K I +   +   +P +++ D   ++QI  NI+ NA+ FTPSG  +I  T    +
Sbjct: 303 QPPARDKDIALLVDYDLFLPTQVVGDPGRIRQILTNIIGNAVKFTPSGHVLISVTGTHED 362

Query: 735 E--EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
              ++ + ++DTG+G+   +++     F Q+ + Q    EGTGLGL + K +V+   G+ 
Sbjct: 363 GVCDLRVTIQDTGIGIPAPKIDHIFGEFNQVDDEQSREFEGTGLGLSITKRLVELMGGQI 422

Query: 793 YIFSTPAKGTLI 804
           ++ S   +GT  
Sbjct: 423 WVTSENGEGTCF 434


>gi|83950813|ref|ZP_00959546.1| sensor histidine kinase/response regulator [Roseovarius nubinhibens
           ISM]
 gi|83838712|gb|EAP78008.1| sensor histidine kinase/response regulator [Roseovarius nubinhibens
           ISM]
          Length = 729

 Score =  310 bits (793), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 97/441 (21%), Positives = 189/441 (42%), Gaps = 22/441 (4%)

Query: 381 IKPVMLYRSDRTCIAASARLHTI-QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
            +      ++R      A L    +   +++ A++    E   +      +N    +++ 
Sbjct: 9   QERRARLAAERLLEQKQAELFAANRQLGKHARALSEEIVETRERVRSIEDENARVRDELS 68

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
           +  ++ ++     +L   +E   DG A+ + +G ++  NRA    F           +  
Sbjct: 69  SANDRIQLVER--RLWQSIETIPDGFALFDEDGRLVMANRAYLLPFDGLTAVGPGVSYME 126

Query: 500 FLEQNTPSVMNH-------YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
            L+  T   +            E +    +       +      + + L           
Sbjct: 127 MLQFCTEEGIVDIGDMAPAAWREYMRERWQSDAPGPRIVRLWNGRAIRLLDQRAPSGD-- 184

Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
                  DI+   + K  L  AK  AE  S  KS FLA +SHEIRTP+  ++G +++++ 
Sbjct: 185 -MVSLALDITAEVRSKEVLRRAKHRAEAASRAKSAFLANMSHEIRTPMNGVMGMADLLRE 243

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
                  +     YA  I  S   +L I+ND+LD SK+E+ +++L  +   L+  + E I
Sbjct: 244 TDL----DEDQALYATTIRNSAEALLGIINDVLDYSKVEADRLSLQLDGFDLERCLHEII 299

Query: 673 SLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII--IST 729
            L+Q  A ++ + +   +   +P R+  D   ++Q+  N++ NA+ FTP G  +I  +  
Sbjct: 300 LLMQPKARDQGVDVWLDYDLFLPTRLRGDGGRIRQVLTNLIGNAVKFTPEGHVLIRVVGV 359

Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
           +     E+ + V DTG+G+   ++      F Q+  +Q  R EGTGLGL +A+ ++    
Sbjct: 360 SAEGRAEIHVTVEDTGIGIAPDKIGHVFGEFNQVEEAQNRRFEGTGLGLAIAQKLIRLMG 419

Query: 790 GKFYIFSTPAKGTL--IEIIF 808
           G+ ++ S P +G++    I  
Sbjct: 420 GEIWVESAPGQGSVFGFTITL 440


>gi|308187582|ref|YP_003931713.1| two component sensor kinase/response regulator protein RcsC
           [Pantoea vagans C9-1]
 gi|308058092|gb|ADO10264.1| two component sensor kinase/response regulator protein RcsC
           [Pantoea vagans C9-1]
          Length = 950

 Score =  310 bits (793), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 94/391 (24%), Positives = 168/391 (42%), Gaps = 29/391 (7%)

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFG 486
           +         +    N  ++E        I+ +   GI I+   +G  + +N        
Sbjct: 334 LAWVFERRMFLPAEENAHRLEEHEQFNRKIVASAPVGICILRTSDGTNILSNELA----- 388

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
                     +   L Q     +N  +        +     +  GS      L +  +  
Sbjct: 389 --------HNYLTLLTQEDRLRLNEII-----GGQQVNFVDVLTGSNTN---LQISFVHS 432

Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
           +    +     + D+S   + +  L      AE+ S  KS FLA VSHE+RTPL  IIG 
Sbjct: 433 RYRNENVAICVLVDVSARVRMEQSLQEMAHAAEQASQSKSMFLATVSHELRTPLYGIIGN 492

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
            ++++ +      +         ++ S +L+L I++D+LD SKIES ++ +   P +  E
Sbjct: 493 LDLLQTKELPSGIDS----LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPRPFAPRE 548

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQI 725
            V+  +        +KR+ +     +++P++L  D   ++Q+  N+L+NAI FT +G   
Sbjct: 549 IVTHIVGNYLSLVVKKRLTLYCFIEHDVPQVLDGDPLRLQQVISNLLNNAIKFTHTGC-- 606

Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
           II     +   +  RVRDTGVG+   EL +   PF Q+ +  Q   +GTGLGL + + ++
Sbjct: 607 IILHAWVAEGYLAFRVRDTGVGIPAKELPRLFDPFFQVGSGVQRNFQGTGLGLAICEKLI 666

Query: 786 DANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           +   G   + S P  G+   +  P+Y    P
Sbjct: 667 NMMDGDIEVDSEPGMGSQFIVRIPIYKGQKP 697


>gi|218289583|ref|ZP_03493803.1| multi-sensor signal transduction histidine kinase [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218240233|gb|EED07416.1| multi-sensor signal transduction histidine kinase [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 590

 Score =  310 bits (793), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 93/556 (16%), Positives = 196/556 (35%), Gaps = 45/556 (8%)

Query: 278 INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS 337
                 + K+   +      E    +    + + +A     + +TP           V  
Sbjct: 57  ATATARSIKEQVASDIAKRVERATVVYGIPYTANAALKAAYDAMTPAERQALSRGQPVTL 116

Query: 338 HGNLFYANP--SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN----AIKPVMLYRSDR 391
            G L   N    ++ +   +S     +A    T +    L +          + +  +  
Sbjct: 117 RGALGKVNRLTVYVQIPSVRSPQPGMLAVSQDTSVLDEPLREIRNMVLFDTVLGVILATG 176

Query: 392 TCIAASARLHTIQWNRENSLAMTFI---PFEKANQFPENMPQNGIEPEDVDTRINK--RK 446
                S  L     +   +                  + + + G     +  ++ +   +
Sbjct: 177 FAFVISKNLSRPLVDMTRAAEEMARGHYRQRVRVVTKDEVGRLGHTFNALARQLAETIEQ 236

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
           + +E   L  IL +  DG+   + +G ++  N    +   +             +++   
Sbjct: 237 LSMEREGLQRILTSLQDGVVATDLDGRVVLANPPAKRHLRHLSVAERG-----IVDEERL 291

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS---SCYSLTMHDISE 563
                 L   +         + T     + + + + ++                + DI+E
Sbjct: 292 PDRLMSLWVRVREQQDAVYREDTW----DGRTIGITMLPLYEADGTTLRGALCVLRDITE 347

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            ++                  + DF+A VSHE+RTPL+ + G++E + +           
Sbjct: 348 ERRL--------------DRLRKDFIANVSHELRTPLSMLQGYTEALLDDISD--DPDMR 391

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA-NEK 682
            E    I      +  +VNDLL+++++ESG+  LHF  V L + +       Q  A +E 
Sbjct: 392 RELTEIIHDETLRMKRLVNDLLNLAQLESGQFKLHFARVDLTQVMRRVARKFQALASDED 451

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
            +    S  ++   +  D   ++Q+  N+L NA   T +G  I        +    +RV 
Sbjct: 452 HLSFEVSIPDHPVMVDGDEDRLEQVFTNLLDNAFRHTATG-TIRFELDIRHD-YAYVRVA 509

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG G+   ++    + F +   ++     GTGLGL +A+ +V  + G+  + S   +GT
Sbjct: 510 DTGSGIPEEDVPYIFERFYKADKARTRSRSGTGLGLAIARQLVIEHRGEILVESRLGEGT 569

Query: 803 LIEIIFPLYDTSHPHD 818
              ++ PL   + P+D
Sbjct: 570 TFTVVLPL---ASPND 582



 Score = 38.1 bits (87), Expect = 6.8,   Method: Composition-based stats.
 Identities = 43/358 (12%), Positives = 86/358 (24%), Gaps = 42/358 (11%)

Query: 89  IDAHGYLKEISEELPKTI--------GNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ 140
            D  G +   +    + +        G    + +  RL  +   +         D + R+
Sbjct: 258 TDLDGRVVLANPPAKRHLRHLSVAERGIVDEERLPDRLMSLWVRV-----REQQDAVYRE 312

Query: 141 NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRG-FGIVHVNRVDNDPRALGKR 199
           +TW G+T               +  LP+Y  +   +  RG   ++              R
Sbjct: 313 DTWDGRTIG-------------ITMLPLYEADG--TTLRGALCVLRDITE----ERRLDR 353

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
           L K F      +        + Y             M+ +++ +      +   L  +  
Sbjct: 354 LRKDFIANVSHELRTPLSMLQGYTEALLDDISDDPDMRRELTEIIHDETLRMKRLVNDLL 413

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP-----SLSAY 314
            L   E            +        + F  L ++       +S  +HP          
Sbjct: 414 NLAQLESGQFKLHFARVDLTQVMRRVARKFQALASDEDHLSFEVSIPDHPVMVDGDEDRL 473

Query: 315 FDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
                NL              +       YA             +D+           A 
Sbjct: 474 EQVFTNLLDNAFRHTATGTIRFELDIRHDYAYVRVADTGSGIPEEDV--PYIFERFYKAD 531

Query: 374 KLSDNNAIKP-VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
           K    +     + L  + +  I     +       E +     +P    N   E    
Sbjct: 532 KARTRSRSGTGLGLAIARQLVIEHRGEILVESRLGEGTTFTVVLPLASPNDDGEGGGV 589


>gi|302871717|ref|YP_003840353.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302574576|gb|ADL42367.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 576

 Score =  310 bits (793), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 89/369 (24%), Positives = 164/369 (44%), Gaps = 30/369 (8%)

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
             +L S+L++   GI   +    IL  NR    +              +         + 
Sbjct: 235 RKRLTSLLDSIDIGIIFFDVNKRILMFNRGAENIL--------ETNLKIGFSLLECVRVY 286

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEE-KLLSLRIIIKKLPFS-SCYSLTMHDISEWKQEK 568
                +   D +   EK    S   + K L +               L + DI+  K+ +
Sbjct: 287 ELFEFLFQQDTK---EKELEISINNKLKFLKVSKKKISYEDGKEGILLILSDITFLKKLE 343

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
                           +SDF+A VSHE++TPLT+I GF E +K+           +++ N
Sbjct: 344 --------------RVRSDFVANVSHELKTPLTSIKGFVETLKDGAID--DKDVALKFLN 387

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I+     ++ ++NDLL +S+IE+  M +  E V + E V E+I L+++ A +K I    
Sbjct: 388 IIEVEVERLVRLINDLLYLSEIENAAMPILDEKVVVKEVVLESIELLKIKAEKKNIQFVD 447

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748
               +   +      +KQI +N++ NAI +    G++ ++   + N  V+++V+DTG+G+
Sbjct: 448 IKVPDGLEMNIYRDWLKQIFINLIDNAIVYNKENGKVWVTVEKS-NGMVVIKVKDTGIGI 506

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
              E+E+  + F ++   +  +  GTGLGL + K +V+   GK ++ S    G+   +I 
Sbjct: 507 PEKEIERIFERFYRVDKGRSRKLGGTGLGLSIVKHIVELYGGKIWVKSQEGYGSEFTVII 566

Query: 809 PLYDTSHPH 817
           P+   +  H
Sbjct: 567 PINKKADLH 575


>gi|281355007|ref|ZP_06241501.1| multi-sensor hybrid histidine kinase [Victivallis vadensis ATCC
            BAA-548]
 gi|281317887|gb|EFB01907.1| multi-sensor hybrid histidine kinase [Victivallis vadensis ATCC
            BAA-548]
          Length = 1560

 Score =  310 bits (793), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 94/380 (24%), Positives = 175/380 (46%), Gaps = 21/380 (5%)

Query: 439  DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
            +      ++   V     I+E+ +  I I++ E  I+S N +VS+  G    ++      
Sbjct: 1045 ERFRQLERIADSVALQRQIVESITIPITIVDPEYRIISANPSVSRECGRTPAELAGTKCY 1104

Query: 499  VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM 558
              + +N        +   L        E              +    + L       + +
Sbjct: 1105 ETVCRNPEPPPWCPVRLTLLDGQEHRTENELNNRR-------IISTAQPLLDRQGKLMYV 1157

Query: 559  ----HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                 DI+E  ++K +L  A + A+     KS FLA VSHE+RTPL A+IGFSE+++   
Sbjct: 1158 LTSDIDITELSRQKQELQKAMEQAQAADRAKSYFLATVSHELRTPLNAVIGFSELLQG-- 1215

Query: 615  FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
             G +     +EY   I  +GN +L+++ D+LD+SK+E+ ++NL        + V E +++
Sbjct: 1216 -GDVAAAEQLEYLRSISFAGNALLNLIYDVLDLSKLEADQLNLVLADTDAGQLVQEVVAV 1274

Query: 675  VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
             +L A EK + +     N    +  D   ++Q+ LN++ NA+ FT +G  + +      +
Sbjct: 1275 FRLKAMEKDLKLTVECVNLEQPLRLDNLRLRQVVLNLVGNAVKFTSAGS-VSVRAVFQPD 1333

Query: 735  -----EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ-QIRGEGTGLGLPLAKAMVDAN 788
                   +I+RV DTG G++    +K   PF Q  +++     EG+GLGL +++ +V+  
Sbjct: 1334 PGGETGMLIIRVADTGPGISPESRKKIFDPFVQGESTRGTHSYEGSGLGLAISQRLVNRM 1393

Query: 789  MGKFYIFSTPAKGTLIEIIF 808
             G+  + S    G++  +  
Sbjct: 1394 GGEIRLESELGSGSVFTVRI 1413



 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 60/468 (12%), Positives = 128/468 (27%), Gaps = 40/468 (8%)

Query: 120 DVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFR 179
           D S        + + +LLK+  T      L   + T   +   ++ALP          F 
Sbjct: 177 DASADGRFLGGDELPELLKKLRT--DFRVLRGSDYTTDELLEQISALP----KNTVLLFH 230

Query: 180 GFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKY-----DIFSQQSPPPHL 234
            +        +N   AL +   +    +      +             ++  +Q+    L
Sbjct: 231 SWASSREEEPENSYTALPQIRQRFSGLILGRFDCYMQFGSAGGHVVDGEMQGRQAGAIAL 290

Query: 235 RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE--SSLPEQEDFHTINLNQYTKKQYFGTL 292
           R+     +          +L  ++  L+ S      +P       +      + +     
Sbjct: 291 RLLAGERASGIPVQKGGSLLLLDEPELVRSGVQLEKVPPDATLLNVPPGFLIRYRVELAY 350

Query: 293 QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLL 351
              +      L          +  + +          P+   V      + YA       
Sbjct: 351 AALAACFLFLLGLAAV----LFRRQAQRKMEVLFRNLPMRIAVVDEEERVLYA------- 399

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411
                    + +GG   L   P  S    +  V+               H    + E  L
Sbjct: 400 -HIPDDAAGDFSGGFERLEQLPDESREQFVAAVVRTFRTGERCGVDYTAHRRARHAEFVL 458

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471
                PF              I  +  +      ++     +    LEA  DG+ + +  
Sbjct: 459 LPRRNPFHTNA-------VMWISGDMTELHEAHLEVAQTAERFRLTLEAIGDGVIVTDPG 511

Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN---TPSVMNHYLTEILSLDLRQTLEKI 528
             +   N   ++L GY  ED   +      +       S +   L + L+ D    L   
Sbjct: 512 LRVTLVNPVAAELTGYSAEDASGRKLEEIFDIVSYLDGSKVESPLKKALATDSVVALANH 571

Query: 529 TLGSTKEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLS 572
           T    ++     +      +  ++       L   D++E  +++++L 
Sbjct: 572 TDLIARDGMRRHIADSAAPIRDAAGRITGGVLVFRDVTEEYEKRDRLR 619



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 50/482 (10%), Positives = 120/482 (24%), Gaps = 55/482 (11%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV----SDILHIDPNNHIGDLLKRQN--T 142
            D    +  ++    +  G  A    G +L ++    S +      + +   L   +   
Sbjct: 508 TDPGLRVTLVNPVAAELTGYSAEDASGRKLEEIFDIVSYLDGSKVESPLKKALATDSVVA 567

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
               T L   +G   +  I  +A PI       +G  G  +      + + R   +    
Sbjct: 568 LANHTDLIARDGMRRH--IADSAAPIRDAAGRITG--GVLVFRDVTEEYEKRDRLRLNGV 623

Query: 203 KFSHLHEIKKGHSSV--EKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
              +  ++ K       E++ + +  + S     R    V +         +  +     
Sbjct: 624 ILKNAAKLAKFIYFCCDEQQTFFVSEEDSGFWPKRDGKPVPAKEWILPEYLEEFEEGWRR 683

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG-- 318
           L + E  +L            +   +       N      E+       + +   D    
Sbjct: 684 LRSGEVETLNLLYAAGFS-GEKRYFELRMERSVNEISGRREFCGIIQVVTEARENDLRCR 742

Query: 319 --ENLTPETVDKCPIPFFVYSHG---NLFYANPSFLLLTKYKSVDDIEIAG--------G 365
               L     D  P   FV            N  F  LT   S   +             
Sbjct: 743 DSLKLLESIRDNLPGYLFVKEADNEFRYLMCNHGFEELTGMSSAQILGKIDPEVFPMDEA 802

Query: 366 LSTLLDAPKLSDNNAIKPV----MLYRSDRTCIAASARLHTIQWNRENSLAM-------- 413
            +       +    +   +        +    +      + I  +    L +        
Sbjct: 803 AAAKFRDDDVRLVESGGQMDMQEFATNAQGRRLIVRTIKNVITRSDGTRLLIGMGIDISR 862

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
            +   ++  +    +         ++  + +  +E +        +   +GI        
Sbjct: 863 QYHLEQEQKRTINTLNDYVNSERIINQSLTRITLEED-------FDRAVNGIL------R 909

Query: 474 ILSTNRAVSK--LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
           I+  N    +  +F Y   ++ R        ++        L  +          ++  G
Sbjct: 910 IIGENAGADRCYIFRYTDAELTRCSNEYEWVRDGVEPAIDMLQNVDMTRFSAWTAELAAG 969

Query: 532 ST 533
             
Sbjct: 970 RD 971



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/395 (9%), Positives = 89/395 (22%), Gaps = 19/395 (4%)

Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVE-KEKYDIFSQQSPPPHLRMKNKVSSLT 244
              V          L+     +     G             +  S       K +     
Sbjct: 484 HLEVAQTAERFRLTLEAIGDGVIVTDPGLRVTLVNPVAAELTGYSAEDASGRKLEEIFDI 543

Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
             Y     V    K  L T    +L    D    +  +         +++ +      + 
Sbjct: 544 VSYLDGSKVESPLKKALATDSVVALANHTDLIARDGMRRHIADSAAPIRDAAGRITGGVL 603

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCP-IPFFVY---SHGNLFYANPSFLLLTKYKSVDDI 360
                +      +   L    +     +  F+Y        F+ +         +    +
Sbjct: 604 VFRDVTEEYEKRDRLRLNGVILKNAAKLAKFIYFCCDEQQTFFVSEEDSGFWPKRDGKPV 663

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
                +               +              +          +    +       
Sbjct: 664 PAKEWILPEYL-------EEFEEGWRRLRSGEVETLNLLYAAGFSGEKRYFEL--RMERS 714

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI--INREGIILSTN 478
            N+        GI     + R N  +    +  L SI +     + +   + E   L  N
Sbjct: 715 VNEISGRREFCGIIQVVTEARENDLRCRDSLKLLESIRDNLPGYLFVKEADNEFRYLMCN 774

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVM---NHYLTEILSLDLRQTLEKITLGSTKE 535
               +L G     IL K        +  +     +  +  + S       E  T    + 
Sbjct: 775 HGFEELTGMSSAQILGKIDPEVFPMDEAAAAKFRDDDVRLVESGGQMDMQEFATNAQGRR 834

Query: 536 EKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570
             + +++ +I +   +        DIS     + +
Sbjct: 835 LIVRTIKNVITRSDGTRLLIGMGIDISRQYHLEQE 869



 Score = 47.7 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 42/437 (9%), Positives = 98/437 (22%), Gaps = 78/437 (17%)

Query: 85   FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN---NHIGDLLKRQN 141
            F    D        +    +  G  + +++G    +V  +         +    L++   
Sbjct: 760  FVKEADNEFRYLMCNHGFEELTGMSSAQILGKIDPEVFPMDEAAAAKFRDDDVRLVESGG 819

Query: 142  TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVH---------------- 185
                +      +G  L V      +      R   G  G  I                  
Sbjct: 820  QMDMQEFATNAQGRRLIVRTIKNVITRSDGTRLLIGM-GIDISRQYHLEQEQKRTINTLN 878

Query: 186  ----VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR------ 235
                  R+ N         +     ++ I +              + +     R      
Sbjct: 879  DYVNSERIINQSLTRITLEEDFDRAVNGILRIIGENAGADRCYIFRYTDAELTRCSNEYE 938

Query: 236  -MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294
             +++ V    +   + D    +     L +    +          L++  K   F  +++
Sbjct: 939  WVRDGVEPAIDMLQNVDMTRFSAWTAELAAGRDIVVPDMTEPPEKLSREVKFLEFQHIRS 998

Query: 295  NSK----------ESFEYLSHRNHPSLS--------------AYFDEGENLTPETVDKCP 330
                                 R     S                  E         D   
Sbjct: 999  LLVTGIQCDGKLYGYVGLDFVRERKEFSDCDIHTVHSIVNLFLLAQERFRQLERIADSVA 1058

Query: 331  I----------PFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
            +          P  +      +  ANPS          + +       T+   P+     
Sbjct: 1059 LQRQIVESITIPITIVDPEYRIISANPSVSRECGRTPAE-LAGTKCYETVCRNPEPPP-- 1115

Query: 380  AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
               PV L   D         L+  +        +        ++  + M     + +  +
Sbjct: 1116 -WCPVRLTLLDGQEHRTENELNNRR--------IISTAQPLLDRQGKLMYVLTSDIDITE 1166

Query: 440  TRINKRKMEIEVMQLCS 456
                K++++  + Q  +
Sbjct: 1167 LSRQKQELQKAMEQAQA 1183


>gi|239627024|ref|ZP_04670055.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239517170|gb|EEQ57036.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 843

 Score =  310 bits (793), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 89/416 (21%), Positives = 179/416 (43%), Gaps = 22/416 (5%)

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGI-ILSTNR 479
           ++  +   ++      +D    + K+E    +  +IL     G A ++ R+G  +     
Sbjct: 155 DRLIDWDGRDCRLEISIDNLSPEYKLEKMDREREAILRTIPGGFARVDARDGRTVTWYGG 214

Query: 480 AVSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
               L GY  E           ++  +  S  +  +            E   +     +K
Sbjct: 215 DFLHLIGYTKEQFENELHSQCSYIHPDDLSRASTIMYHSKETGKPTAAEGRIITRDGTQK 274

Query: 538 LLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNKLSHAKKIAEK----ESSHKSDFL 589
           +L++         S      +     DI++ ++ + +  +A + A +     ++ K++FL
Sbjct: 275 VLTMTFSYMSAENSWDGIESFYSIGIDITKDRELQERQRNALEEAYQVARVANAAKTNFL 334

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
           + +SH+IRTP+ AI+G + + +     P    +  +    I  S   +L ++N++LD+SK
Sbjct: 335 SSMSHDIRTPMNAIMGMTTIAQANLESP---EKIRDCLEKIKTSSRHLLSLINEVLDMSK 391

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN-NIPRILADLRSVKQIA 708
           IESGK++L    ++L + + E + + +   NEK  L R S        ++AD   ++Q+ 
Sbjct: 392 IESGKVSLALAQMNLPDMIQEVMDMCRPLVNEKHQLFRISIGRVRHENVIADGDRLRQVL 451

Query: 709 LNILSNAIHFTPSGGQIIISTTHT-----SNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
           +N+LSNAI +T  GG I +             +      D G+G++   L      F + 
Sbjct: 452 MNLLSNAIKYTQEGGTITLRINERSSLTPDKRQYEFICTDNGIGISKDYLPHIFDAFTRA 511

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819
            +S+  + +GTGLG+ + + +V    G   + S    G+ + +  PL +  H  D 
Sbjct: 512 EDSRVSKIQGTGLGMAITENIVRMMNGIIDVKSEEGAGSTVTVSVPL-EVCHEEDA 566


>gi|182702029|ref|ZP_02619493.2| sensory box histidine kinase [Clostridium botulinum Bf]
 gi|237793660|ref|YP_002861212.1| sensory box histidine kinase [Clostridium botulinum Ba4 str. 657]
 gi|182672093|gb|EDT84054.1| sensory box histidine kinase [Clostridium botulinum Bf]
 gi|229263670|gb|ACQ54703.1| sensory box histidine kinase [Clostridium botulinum Ba4 str. 657]
          Length = 543

 Score =  310 bits (793), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 85/362 (23%), Positives = 161/362 (44%), Gaps = 10/362 (2%)

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLF-GYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           ++E   D I I  ++  I+  N + ++L       ++       F+ +     + + L  
Sbjct: 148 LIENARDAIIIHRKD-KIVFANESAAELLICSNNNELQNLNINSFILKEEQKKIRNKLEL 206

Query: 516 ILSLDLRQTLEKITLGSTKEEKL-LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA 574
           +          +  + + K +K+ +                  + DI+  KQ +      
Sbjct: 207 VYRNKRDIVCVEQVIQNNKRKKINVESISTYIIYNNKPAILSILRDITSQKQVEKLQKDV 266

Query: 575 KKIAEKESSHK------SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
           +K  E  +  +      +DFLA +SHE++TPL  I    +++   +       +  +Y  
Sbjct: 267 EKNIELLNESREYNKLITDFLANISHELKTPLNVIFTAVQILDLYKKDAESYDKKEQYIK 326

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I ++   ++ ++N+LLD +K++SG + L+    ++   V E    V  YA  K I I  
Sbjct: 327 VIKQNCYRLMRLINNLLDTTKLDSGYLKLNLVNCNIVNLVEEITLSVVYYAESKNINIIF 386

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748
                   +  D   +++I LN+LSNAI FT SGG I ++     +  +I+ V+DTG+G+
Sbjct: 387 DTDVEEKIMAVDPDKIERIVLNLLSNAIKFTGSGGNIYVTVKDFEDN-IIISVKDTGIGI 445

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
              ++E     F Q+  + +   EG+G+GL L K+ V+ + G   I S   KG+   I  
Sbjct: 446 PRDKIENIFDRFVQVDKTLRRNKEGSGIGLYLVKSFVNMHEGTIDIQSEIGKGSEFIINI 505

Query: 809 PL 810
           P+
Sbjct: 506 PV 507


>gi|148378343|ref|YP_001252884.1| two-component sensor kinase [Clostridium botulinum A str. ATCC
           3502]
 gi|148287827|emb|CAL81893.1| two-component sensor kinase [Clostridium botulinum A str. ATCC
           3502]
          Length = 617

 Score =  310 bits (793), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 85/362 (23%), Positives = 161/362 (44%), Gaps = 10/362 (2%)

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLF-GYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           ++E   D I I  ++  I+  N + ++L       ++       F+ +     + + L  
Sbjct: 222 LIENARDAIIIHRKD-KIVFANESAAELLICSNNNELQNLNINSFILKEEQKKIRNKLEL 280

Query: 516 ILSLDLRQTLEKITLGSTKEEKL-LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA 574
           +          +  + + K +K+ +                  + DI+  KQ +      
Sbjct: 281 VYRNKRDIVCVEQVIQNNKRKKINVESISTYIIYNNKPAILSILRDITSQKQVEKLQKDV 340

Query: 575 KKIAEKESSHK------SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
           +K  E  +  +      +DFLA +SHE++TPL  I    +++   +       +  +Y  
Sbjct: 341 EKNIELLNESREYNKLITDFLANISHELKTPLNVIFTAVQILDLYKKDAESYDKKEQYIK 400

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I ++   ++ ++N+LLD +K++SG + L+    ++   V E    V  YA  K I I  
Sbjct: 401 VIKQNCYRLMRLINNLLDTTKLDSGYLKLNLVNCNIVNLVEEITLSVVYYAESKNINIIF 460

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748
                   +  D   +++I LN+LSNAI FT SGG I ++     +  +I+ V+DTG+G+
Sbjct: 461 DTDVEEKIMAVDPDKIERIVLNLLSNAIKFTGSGGNIYVTVKDFEDN-IIISVKDTGIGI 519

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
              ++E     F Q+  + +   EG+G+GL L K+ V+ + G   I S   KG+   I  
Sbjct: 520 PRDKIENIFDRFVQVDKTLRRNKEGSGIGLYLVKSFVNMHEGTIDIQSEIGKGSEFIINI 579

Query: 809 PL 810
           P+
Sbjct: 580 PV 581


>gi|251771710|gb|EES52285.1| PAS/PAC sensor signal transduction histidine kinase [Leptospirillum
           ferrodiazotrophum]
          Length = 496

 Score =  310 bits (793), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 91/503 (18%), Positives = 192/503 (38%), Gaps = 45/503 (8%)

Query: 325 TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
             D   I       GN+ Y N +F  +T Y   + +    G +  +           K +
Sbjct: 13  VADLHAIISATDLAGNITYVNDNFCDITGYAREELL----GKNHRILKSGTHGPAFYKGM 68

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
                D +      +    +    +   +              +    I  +   T    
Sbjct: 69  WQTLVDGSPWHGQIKN---RKKDGSFYWVEATISPMYGSDGAPVGYLSIRTDITSTMEVL 125

Query: 445 RKMEIEVMQLCSILEATSDGIAIIN---REGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
            ++ ++      ++E   D I I +    +  ++  N A  ++ GY +++IL K      
Sbjct: 126 ERLRLQAR----VIEMAGDAIVIADARLPDTPLIHVNPAFEEMSGYSLDEILDKNCRFLN 181

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLT 557
             +        +   +       +  +     K+  L    I +  +   +     +   
Sbjct: 182 RTDRDQPGLAAIRAAVRDGTE--VRTVLRNYKKDGSLFFNEIHLFPVLDDNGILTHFVAI 239

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
             D+++    +  L  AK+ A++ +  KSDFL  ++HE+RTPL AI+G+++++++     
Sbjct: 240 EQDVTKRILLEESLKKAKEEADRANRAKSDFLTLITHELRTPLNAILGYAQLVESNPRSS 299

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
           L N     +   I  +G  +L++++ LLD+ +IE+G + L    V L   V E+ +L   
Sbjct: 300 LDNED-RGHVKQIMAAGWHLLELIDQLLDLGRIETGNILLSLTTVGLRGLVEESQALAGD 358

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737
             + KRI  +     ++    AD   ++Q+ +N+LSNA  ++     + +S T      +
Sbjct: 359 LWDRKRIGFQNLVPEDLVA-RADRERLRQVVINLLSNATKYSDPEKTVTVSGTIRDESTI 417

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT-----------GLGLPLAKAMVD 786
           +L V D G G+T  +     + F ++  + +    GT                      +
Sbjct: 418 LLSVADQGWGLTQEQQTHLFESFNRL-GAGERGIPGTGVGLVVVKKLV-----------E 465

Query: 787 ANMGKFYIFSTPAKGTLIEIIFP 809
              G   + S P +G++  ++ P
Sbjct: 466 MMGGTISVESQPGQGSVFMVVLP 488



 Score = 73.1 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/368 (7%), Positives = 97/368 (26%), Gaps = 11/368 (2%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKRQNTWYGKT 147
            D  G +  +++      G    +++G     + S          +   L   + W+G+ 
Sbjct: 23  TDLAGNITYVNDNFCDITGYAREELLGKNHRILKSGTHGPAFYKGMWQTLVDGSPWHGQI 82

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                +G+     ++    P+Y  +    G+    I        +     +   +     
Sbjct: 83  KNRKKDGSFY--WVEATISPMYGSDGAPVGY--LSIRTDITSTMEVLERLRLQARVIEMA 138

Query: 208 HEI-KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
            +      + +        +           +++      + ++ D  +     +  +  
Sbjct: 139 GDAIVIADARLPDTPLIHVNPAFEEMSGYSLDEILDKNCRFLNRTDRDQPGLAAIRAAVR 198

Query: 267 SSLPEQEDFHT--INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
                +        + + +  + +   + +++     +++     +     +E      E
Sbjct: 199 DGTEVRTVLRNYKKDGSLFFNEIHLFPVLDDNGILTHFVAIEQDVTKRILLEESLKKAKE 258

Query: 325 TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL---STLLDAPKLSDNNAI 381
             D+       +              +  Y  + +      L           ++    +
Sbjct: 259 EADRANRAKSDFLTLITHELRTPLNAILGYAQLVESNPRSSLDNEDRGHVKQIMAAGWHL 318

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
             ++    D   I     L ++       L              + +    + PED+  R
Sbjct: 319 LELIDQLLDLGRIETGNILLSLTTVGLRGLVEESQALAGDLWDRKRIGFQNLVPEDLVAR 378

Query: 442 INKRKMEI 449
            ++ ++  
Sbjct: 379 ADRERLRQ 386


>gi|51245738|ref|YP_065622.1| Pho family two-component system sensor histidine kinase
           [Desulfotalea psychrophila LSv54]
 gi|50876775|emb|CAG36615.1| related to two-component system sensor histidine kinase (Pho
           family) [Desulfotalea psychrophila LSv54]
          Length = 602

 Score =  310 bits (793), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 110/578 (19%), Positives = 209/578 (36%), Gaps = 44/578 (7%)

Query: 237 KNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS 296
           ++ ++ L ++              +  S        ED   +N +   + +    L   +
Sbjct: 62  EDNIAELRDFIVQGGRESGVRLTVIAASGRVLADSNEDPDIMNNH-RNRPEVATALSGTT 120

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKS 356
             S  + +  +   L          +P T +         S     Y   + +       
Sbjct: 121 GSSLRFSTTLSDALLYVAIPLRLQASPVTTNLILRASLSISS---LYQTIARIKRRVALG 177

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
              I I   L+TL  +  +S       +   R      +    L   +      +A+   
Sbjct: 178 ALAIVILAILTTLFISRNISRPLEELKIWAERFAHGDFSKRKELLQSRNASREVVALAKT 237

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476
               A    E +                     +  QL ++  +  +GI  I+ E  I+ 
Sbjct: 238 MERMAENLHEKIDMIS----------------NQRNQLETLFSSMREGIIAIDFEERIVL 281

Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI-LSLDLRQTLEKITLGSTKE 535
            N A ++LF         K    F           Y+ E   SL    TL      S  +
Sbjct: 282 INDAATRLFDPGGSPSAGKLVQEFTRSLDLLQQIQYVRETGESLKAELTLHGSQTTSYLQ 341

Query: 536 EKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
              +   +       SS   + ++D++  ++ ++               + DF+A VSHE
Sbjct: 342 TSAVPFHMA---NDDSSGVLIVLNDVTHLRRLESV--------------RRDFVANVSHE 384

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE--SG 653
           +RTP+TAI G+ E + +             +   + R  + + DI+NDLL +S+IE  S 
Sbjct: 385 LRTPITAIRGYVETLLDGALD--QKEDARRFLAIVLRQSSRLSDIINDLLALSRIELDSS 442

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713
             N+  E   +   V  A+   Q+ A +K I+++     +I R+  +   ++Q  +N++ 
Sbjct: 443 TDNIELEEQHICSVVRAALQTCQIDAEQKGIILQLHCPEDI-RVPLNPHLIEQALVNLIV 501

Query: 714 NAIHFTPSGGQIIIST-THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           NA+ ++P   +I +        +EV + V D G G+    L +  + F +   ++     
Sbjct: 502 NAVRYSPEKSEIRVEVLACEEGQEVSISVADDGCGIGAEHLPRVFERFYRSDKARSRELG 561

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           GTGLGL + K +V A+ G+  + S    GT      P+
Sbjct: 562 GTGLGLAIVKHIVQAHNGRVAVNSEEGVGTEFSFFLPI 599


>gi|328956719|ref|YP_004374105.1| two-component sensor histidine kinase [Carnobacterium sp. 17-4]
 gi|328673043|gb|AEB29089.1| two-component sensor histidine kinase [Carnobacterium sp. 17-4]
          Length = 571

 Score =  310 bits (793), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 81/377 (21%), Positives = 169/377 (44%), Gaps = 25/377 (6%)

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
                  +++E    +L  ++     G+ +I+    I   N A+S + G  V  ++   +
Sbjct: 217 TSLEEQTQEIEQNDKRLYELINHLVIGVMLIDEHRTIKMVNPAMSVILGEDVTKLVGNSY 276

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII--KKLPFSSCYS 555
               +    S +       ++    +           ++K++   I+    K P      
Sbjct: 277 VEATKSYGLSHLIE-----IAYQKNEKQNDEIYFYYPKDKIVDANIVPIDGKEPGEQNLI 331

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
           + ++DI+E ++ +                ++DF+   SHE++TP+TA+ GFSE + +   
Sbjct: 332 VLLYDITEIRRLE--------------KVRTDFVTNASHELKTPVTALKGFSETLLDGAM 377

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
                    ++   +    + +  +VND+L++SK+E  ++ ++ + V+L EAV     LV
Sbjct: 378 --EDKEVLKQFLEIMLAESSRLDFLVNDILELSKLEQKQVPMNMQEVNLTEAVLSTFQLV 435

Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
           +  A+EK + +      +   I  D   +KQI  N+++NA+ +T   G++ ++    +N+
Sbjct: 436 KQTADEKEMKLNL-IEEDTLFITVDSSRLKQILANLINNAVVYTQDSGEVTVTIRKENNQ 494

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            VIL V D G+G+   E ++  + F ++  ++     GTGLGL + K +V+   G   + 
Sbjct: 495 AVIL-VSDNGIGIPEDEQDRIFERFYRVDKARSRNSGGTGLGLSIVKYLVENLNGSIAVE 553

Query: 796 STPAKGTLIEIIFPLYD 812
           S    GT   +  P+  
Sbjct: 554 SKLGLGTTFIVRLPIQP 570


>gi|291568305|dbj|BAI90577.1| hypothetical protein [Arthrospira platensis NIES-39]
          Length = 358

 Score =  310 bits (793), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 82/258 (31%), Positives = 149/258 (57%), Gaps = 8/258 (3%)

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            ++ E +Q + +L+   +   +    K +FLA +SHE+RTPL AI+G +E ++ + FGP+
Sbjct: 83  QELRERQQAQQQLTQRNEELIRAKRLKDEFLANMSHELRTPLNAILGMTEGLQEEVFGPV 142

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
            N R ++    ++RS + +L ++ND+LD++KIESG++ L   P ++      +I+ ++  
Sbjct: 143 -NDRQLKALQTVERSASHLLALINDILDVAKIESGQVELECSPTAIAPLCKSSIAFIKQQ 201

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST-------TH 731
           A +KRI +  +    +P I+ D R ++Q+ +N+L+NA+ FTP GG I +           
Sbjct: 202 ALKKRIQLSVNLPLKLPDIILDERRIRQVLINLLNNAVKFTPEGGSITLEVILPQPREAE 261

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
             +  +   VRDTG+G++   ++K  +PF QI ++   + +GTGLGL L K +V+ + G+
Sbjct: 262 GESPYLRFSVRDTGIGISPENIKKLFQPFMQIDSALNRQYQGTGLGLALTKQIVELHGGR 321

Query: 792 FYIFSTPAKGTLIEIIFP 809
             + S    G+   I  P
Sbjct: 322 VGLTSEVLLGSCFSIDLP 339


>gi|320160495|ref|YP_004173719.1| putative two-component sensor histidine kinase [Anaerolinea
            thermophila UNI-1]
 gi|319994348|dbj|BAJ63119.1| putative two-component sensor histidine kinase [Anaerolinea
            thermophila UNI-1]
          Length = 1095

 Score =  310 bits (793), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 94/438 (21%), Positives = 189/438 (43%), Gaps = 31/438 (7%)

Query: 380  AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
              +   L       +  +     I+        +     +        +         + 
Sbjct: 676  PARMRRLSLPSGKTLPGALAAIAIRHEGRYFGVLWVAYEQPHAFGDGEIRFLSTLAGQIA 735

Query: 440  TRINKRKM----EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
                  ++    EI   +L S+L ++ + + +I+ +  +L  N+A  ++ G  +     K
Sbjct: 736  VAAASARLYAMAEIGRQRLESVLASSPEPVLVIDEKERLLLLNQAALQVPGLLLMAEPNK 795

Query: 496  PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555
            P    + Q         +T + S   R+ L +            S+  +I +        
Sbjct: 796  PVHEVIAQP------DLVTLLKSPLDRRVLSREITFPNNRVYYASVSAVIAEGKPVGRIC 849

Query: 556  LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
             T+ DI+ +K              +    KSDF+A VSH++R+PLT + G++ +++    
Sbjct: 850  -TLRDITHFK--------------ELDQIKSDFVATVSHDLRSPLTLMKGYTTMLQ---M 891

Query: 616  GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
                N +   Y   I      +  +VN+LLD+ +IE+G + L  E V + + V E ++ +
Sbjct: 892  VGELNEQQKAYVQKIISGVENMSRLVNNLLDLGRIEAG-IGLQIEKVMVSQVVDEVLNAL 950

Query: 676  QLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
            QL A +K+I +   + +  P  +  D   ++Q   N++ NAI +TPSGG++ I      +
Sbjct: 951  QLQATQKQIELEKEWQSTAPVIVEGDRALLQQALYNLVENAIKYTPSGGKVSIRLE-ERS 1009

Query: 735  EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
            E ++L+V DTG+G+   +L +  + F +    +  +  G+GLGL + K++V+ + G+ ++
Sbjct: 1010 ESLVLKVVDTGIGIAPLDLPRLFEKFYRSGRRESYQQRGSGLGLAIVKSIVERHHGRVWV 1069

Query: 795  FSTPAKGTLIEIIFPLYD 812
             S   KG+   +  PL  
Sbjct: 1070 ESQLGKGSTFSVELPLRQ 1087


>gi|317496244|ref|ZP_07954604.1| hsp90-like protein [Gemella moribillum M424]
 gi|316913819|gb|EFV35305.1| hsp90-like protein [Gemella moribillum M424]
          Length = 647

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 82/402 (20%), Positives = 172/402 (42%), Gaps = 32/402 (7%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKM-EIEVMQLCSILEATSDGIAIINREGIILS 476
               +   E      +  +       ++ + E E  +L +I+E+  DGI   +  G I+ 
Sbjct: 259 VVGIDTNDEIGDLAKVFNKISKRIEEEQAVTETERRKLATIIESMMDGIITTDNNGRIIL 318

Query: 477 TNRAVSKLFGYPVEDI-LRKPFTVFLEQNTPSVMNHYLTE-------ILSLDLRQTLEKI 528
            N +   + G   E+I + K     L       +   +             D    L   
Sbjct: 319 INTSAEDMIGARDEEIFIGKDALKILNITEYEHIGDIIEAEDSLLVNTSKTDESLLLRAE 378

Query: 529 TLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
                KEEK    ++          Y + ++D+++ ++++ +              + +F
Sbjct: 379 FSKIVKEEKEDLTQMS----TELEGYIIVLYDVTDQERQEKE--------------RREF 420

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
           ++ VSHE+RTPLT +  + E ++             ++ + I +  N ++ +VN+L+ + 
Sbjct: 421 VSTVSHELRTPLTTMNSYIEALEEGVIN--DKELAPQFIDTIHKETNRMIRMVNELMQLG 478

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIA 708
           K++  + +   E + +++ + +  +  +L   EK        +     +  D   + Q+ 
Sbjct: 479 KMDIKEEHYEKEFIDINKLIEQISNRFELTHPEKN--FIKHTSKTPIFVEGDQDKLTQVF 536

Query: 709 LNILSNAIHFTPSGGQIIISTTHT-SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
            NI++NAI ++P+G  I I      ++  V + ++D GVG+    ++K    F ++  S+
Sbjct: 537 DNIMNNAIKYSPNGKNITIRVRQNYNHNRVNISIKDEGVGIPLVHIDKIFNRFYRVDKSR 596

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           Q    GTGLGL LAK +++A+ G+ +  S    GT+I +  P
Sbjct: 597 QRSMGGTGLGLALAKNIIEAHKGRIWAQSREGYGTIIFVTLP 638


>gi|53748095|emb|CAG38882.1| putative histidine kinase BvgS [Bordetella holmesii]
          Length = 1218

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 96/385 (24%), Positives = 176/385 (45%), Gaps = 21/385 (5%)

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK-----PF 497
            +R +  ++  +  +++   + + + +R G ++  NR+    F    ED++ +     P 
Sbjct: 569 AERALSDQLAFMRVLIDGIPNPVFVRDRHGRMVICNRSYLDTFQLQAEDVVGRTLLESPM 628

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL--SLRIIIKKLPFSSCYS 555
                     V   YL  +         + + L    E+  L   L      +   +   
Sbjct: 629 RTDNPAQAARVHEQYLQAMEQEAGGPVFQDLELTLRGEKHYLYHWLLPYADSVGRVNGLI 688

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
               D++E  +  + L  AK+ A+  +  K+ FLA +SHEIRTP+ AIIG  E++  +  
Sbjct: 689 GGWTDLTERMRLLHDLQEAKEEADAANRAKTTFLATMSHEIRTPMNAIIGMLELVLRRPP 748

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
               +    +       S   +LD++ D+LDISKIE+ K+ L   P  L   +   +++ 
Sbjct: 749 EQAVD---RQALMVAYDSARSLLDLIGDILDISKIEADKLELTPVPTDLRRLLESVVNVF 805

Query: 676 QLYANEKRILIRTSF-ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
           Q  A +  + +R    A+ +P +  D   +KQ+  N++SNA+ FT  GG + +S      
Sbjct: 806 QGMARQNGLSLRLDIGADQVPAVSIDASRLKQVVSNLVSNALKFTEKGG-VTVSMQVRPV 864

Query: 735 EE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE---GTGLGLPLAKAMVDA 787
           E+    + + V D+G G++  +  +  +PF Q+    +       GTGLGL +++ +V A
Sbjct: 865 EQGLARIEIAVDDSGPGISAADRRRLFEPFTQVHQEARADKGRLAGTGLGLAISRRIVQA 924

Query: 788 NMGKFYIFSTPAKGTLIEIIF--PL 810
             G F + S P KGT I++    PL
Sbjct: 925 MGGSFDLSSIPGKGTRIDVQLCAPL 949



 Score = 40.8 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 29/245 (11%), Positives = 53/245 (21%), Gaps = 20/245 (8%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCD--------VSDILHIDPNNHIGDLLKRQN 141
           D HG +   +     T    A  ++G  L +               +      +      
Sbjct: 595 DRHGRMVICNRSYLDTFQLQAEDVVGRTLLESPMRTDNPAQAARVHEQYLQAMEQEAGGP 654

Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
            +         E   LY  +    LP        +G  G                 +   
Sbjct: 655 VFQDLELTLRGEKHYLYHWL----LPYADSVGRVNGLIGGWT--DLTERMRLLHDLQEAK 708

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
           ++    +  K    +    +            + M   V       A     L    Y  
Sbjct: 709 EEADAANRAKTTFLATMSHEIRTPMNA----IIGMLELVLRRPPEQAVDRQALMV-AYDS 763

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL-SHRNHPSLSAYFDEGEN 320
             S    + +  D   I  ++         L+   +              LS   D G +
Sbjct: 764 ARSLLDLIGDILDISKIEADKLELTPVPTDLRRLLESVVNVFQGMARQNGLSLRLDIGAD 823

Query: 321 LTPET 325
             P  
Sbjct: 824 QVPAV 828


>gi|91974689|ref|YP_567348.1| PAS/PAC sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris BisB5]
 gi|91681145|gb|ABE37447.1| PAS/PAC sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris BisB5]
          Length = 837

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 133/708 (18%), Positives = 253/708 (35%), Gaps = 43/708 (6%)

Query: 121 VSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN----REFS 176
           +     +  ++ +  LL +   +     L  +  +     I+     I  +     RE S
Sbjct: 155 LPPEPALQMDHAVDALLDKGEAF-----LLHLTTSTGR-SIEAMGRAIGGQAILRIRELS 208

Query: 177 GFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM 236
           G R        R   D     K L  +   L             +               
Sbjct: 209 GIR--------RELADMSRRFKSLQDESEMLRGFANAAPWPIWTRRASGELSFANAAYAR 260

Query: 237 KNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS 296
                S  +      ++L +     L    +   +      I ++   +      L+ + 
Sbjct: 261 ATDAGSAADAVNRNLELLDSNDRGNLARALNDNAQFAARLPIVVSGERRYFDVRALRLSG 320

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYK 355
             +   +      +L A           T+D+      V+     L + N S+  L    
Sbjct: 321 GSAGIAVDASEAAALGAALVRMAEAHRRTLDQLSSGVAVFDAQRRLAFYNDSYRRLWD-- 378

Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA---RLHTIQWNRENSLA 412
                     L          D++ I  +   R             +LH      E   A
Sbjct: 379 ----------LDRAFLDSNPDDSSVIDRLRAARKLPEERDFREWKKKLHEAYRAVEPEKA 428

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL----CSILEATSDGIAII 468
           + ++P  +A        Q G      D      +++     L       L+  ++ +A+ 
Sbjct: 429 IWYLPDGRAISIVTTPNQEGGVTYLFDDVTESLELQRRYGGLIDVQRETLDNLTEAVAVF 488

Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL-TEILSLDLRQTLEK 527
              G     N A ++++    E +  +P    +E+    + +  +  + L   +    ++
Sbjct: 489 GSNGCAQLFNPAFTRMWNLSPEALNNRPHIETVEEWCRPLFDDAVSWQALRSAITGIDDR 548

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
             +    E K  ++              LT  DIS+ +  +  L    +  E     K D
Sbjct: 549 KHVLLKLERKDGTVLSCKTMPLPDGATMLTFLDISDTENVERALRERNEALETADRIKVD 608

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           F+  VS+E+R+PLT IIGF+ ++ +   GPL N +  EY  YI  S N ++ I+N++LD+
Sbjct: 609 FVHHVSYELRSPLTTIIGFAHLLGDPSTGPL-NDKQSEYIAYITSSTNALMAIINNILDL 667

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707
           + I++G M L+  P+ +  A+  A   +Q      +I +       +   + D R V Q+
Sbjct: 668 ASIDAGAMTLNLGPIDIGRAIDAAAEGIQDRLARDQITLDVEIDPAVGEFVGDERRVVQV 727

Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
             N+L+NA+ F+P+   + +   H    +V+  V D G G+     +K    F    +SQ
Sbjct: 728 LYNLLANAVGFSPNQATVTL-VVHKIGAKVVFTVTDAGPGIAPELKDKVFDWFE--SHSQ 784

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
             R  G GLGL L ++ V+ + GK  + S   +GT +   FP+  ++ 
Sbjct: 785 GSRHRGPGLGLALVRSFVELHGGKVQVDSVVGRGTSVICEFPIEPSAQ 832


>gi|207724848|ref|YP_002255245.1| composite two-component transcriptional regulatory protein (sensor
           histidine kinase and response regulator hybrid)
           [Ralstonia solanacearum MolK2]
 gi|206590073|emb|CAQ37034.1| composite two-component transcriptional regulatory protein (sensor
           histidine kinase and response regulator hybrid)
           [Ralstonia solanacearum MolK2]
          Length = 675

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 96/378 (25%), Positives = 170/378 (44%), Gaps = 22/378 (5%)

Query: 446 KMEIE--VMQLCSILEATSDGIAIINREGIILST-NRAVSKLFGYPVEDILRKPFTVFLE 502
           + +      +L + L+A+   +  ++         N     +FG    ++L +       
Sbjct: 151 ETQQRVSQQRLLAALQASPISLYDVDNTMHFTWVHNP----VFGLQPHELLGRTVREVFG 206

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHD 560
           +   S +      +++      +E        +  +  + ++  +         +  + D
Sbjct: 207 RRAASRLTEAGQRVIATGSPTRVEFAFRRRHTQRVVYDVVVMPLRDDTGEIIGLTNAVID 266

Query: 561 ISEWKQEK-------NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
           I+E +Q +          S A++ AE+ S  K DFLA VSHE+RTPL A++G+++++  +
Sbjct: 267 ITEHRQAEARRTQLLEAESRAREEAERASRLKDDFLATVSHELRTPLNAVLGWAQLLAMR 326

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
              P     +      I+RS    + +++DLLD+S I SGK+ L   PV L + +  A  
Sbjct: 327 ---PYDEAMFRRGLEAIERSARTQVHLIDDLLDMSAILSGKVPLEIGPVDLADVLERARE 383

Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
            ++  A +K+I I T +   +P +  D   +KQ+  N+L+NA+ FTP GG I +      
Sbjct: 384 TIEPMARQKQIAIDTEYPP-VPLLQGDAGRLKQVFWNLLANAVKFTPEGGHIRVCVQALP 442

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
              V   VRDTG+G+    L      F Q   S   R  G GLGL +AK +V+ + G+  
Sbjct: 443 EGLVA-TVRDTGIGIEPTFLPHVFDRFQQADLSSTRRHGGLGLGLAIAKQLVELHHGRIT 501

Query: 794 IFST-PAKGTLIEIIFPL 810
             S     GT + +  PL
Sbjct: 502 AASNGANLGTTMAVTLPL 519



 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/245 (11%), Positives = 64/245 (26%), Gaps = 17/245 (6%)

Query: 105 TIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLA 164
             G    +++G  + +V            G  +    +       +        V  D+ 
Sbjct: 188 VFGLQPHELLGRTVREVFGRRAASRLTEAGQRVIATGSPTRVEFAFRRR-HTQRVVYDVV 246

Query: 165 ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDI 224
            +P+     E  G     I           A   +L +  S   E  +  S ++ +    
Sbjct: 247 VMPLRDDTGEIIGLTNAVI--DITEHRQAEARRTQLLEAESRAREEAERASRLKDDFLAT 304

Query: 225 FSQQSPPPHLRMK--NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQ 282
            S +   P   +    ++ ++  Y                 ++   + +  D   I   +
Sbjct: 305 VSHELRTPLNAVLGWAQLLAMRPYDEAMFRRGLEAIERSARTQVHLIDDLLDMSAILSGK 364

Query: 283 YTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNL- 341
              +     L +  + + E +         A   E            P+P      G L 
Sbjct: 365 VPLEIGPVDLADVLERARETIEPMARQKQIAIDTEYP----------PVPLLQGDAGRLK 414

Query: 342 -FYAN 345
             + N
Sbjct: 415 QVFWN 419


>gi|298244484|ref|ZP_06968290.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297551965|gb|EFH85830.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 482

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 90/502 (17%), Positives = 195/502 (38%), Gaps = 32/502 (6%)

Query: 315 FDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
           F + E      V+K P   +V +  G++ + N S    T  K  + I     L  +    
Sbjct: 7   FQQVEEELRLIVEKTPNLIWVATPDGSITFCNQSLADYTGLK-CEQIMKENWLRFIHPGE 65

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
           + +   A K  +      +      RL                           +   G+
Sbjct: 66  QHAAAAAWKEAV---QTDSVYEEEHRLGN--GAGGTYHWFLVRVVPLKKVGGSTVKWLGV 120

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
                + +  ++ + +      ++ ++   G+ I +  G+I   N A   + GY  +++L
Sbjct: 121 CTNIDEQKRLEKSLRVSEACFSALFQSNILGLTIGDSNGLIHDANEAFLSMLGYTRDELL 180

Query: 494 RKPFTV--FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
                V       + S+       +L   +   +EK     +K+  L+   +    L   
Sbjct: 181 NGTVRVEALTPPESHSLNKQIFRNLLETGVLSPIEKD--HLSKDGNLVPTLVGAALLEGE 238

Query: 552 S-CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
              +   + D++E K+ +                K +F++  SHE++ PLTA+   S  +
Sbjct: 239 QSQHIAFLLDMTERKELE--------------RRKDEFISIASHELKVPLTALTLLSSRL 284

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
           + +  G  G     +    ++     +  ++NDLLD+SKI+ GK +   E + L   + E
Sbjct: 285 RKKLTGNDGFA-AEQVLTRMEGQVRTLTRLINDLLDVSKIQMGKFDYADESLDLASLIHE 343

Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
            ++  Q       + +  + + +    + D   + Q+  N+L+NA+ ++P   ++ I  +
Sbjct: 344 VVAECQHATTTHTLEVHGALSGS---FVGDRDRLSQVVTNLLTNAVKYSPQANRVDIHLS 400

Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ-IRGEGTGLGLPLAKAMVDANM 789
            + +    + V+D GVG+   + +   + F +   S++     G G+GL +A+ +V    
Sbjct: 401 RS-SGYARIHVQDYGVGIPKEQQQIIFERFNRGTYSRKERAFPGLGMGLYIAQEIVKHYQ 459

Query: 790 GKFYIFSTPAKGTLIEIIFPLY 811
           G+  + S   KG +  +  P+ 
Sbjct: 460 GEILVESEEGKGAIFTLSLPMA 481



 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/298 (10%), Positives = 71/298 (23%), Gaps = 15/298 (5%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144
             W     G +   ++ L    G    +++                        + ++ Y
Sbjct: 24  LIWVATPDGSITFCNQSLADYTGLKCEQIMKENWLRFIHPGEQHAAAAAWKEAVQTDSVY 83

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            +           Y    +  +P+       S  +  G+              +  +  F
Sbjct: 84  EEEHRLGNGAGGTYHWFLVRVVPLKKVGG--STVKWLGVCTNIDEQKRLEKSLRVSEACF 141

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPP------PHLRMKNKVSSLTEYYAHKDDVLKTEK 258
           S L +      ++      I                 + N    +      +   L  + 
Sbjct: 142 SALFQSNILGLTIGDSNGLIHDANEAFLSMLGYTRDELLNGTVRVEALTPPESHSLNKQI 201

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE-YLSHRNHPSLSAYFDE 317
           +  L       P ++D  + + N          L+    +     L       L    DE
Sbjct: 202 FRNLLETGVLSPIEKDHLSKDGNLVPTLVGAALLEGEQSQHIAFLLDMTERKELERRKDE 261

Query: 318 GENLTPETVDKCPIPFFVYSHGNL---FYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
             ++    + K P+         L      N  F        ++       L+ L++ 
Sbjct: 262 FISIASHEL-KVPLTALTLLSSRLRKKLTGNDGFAAEQVLTRME--GQVRTLTRLIND 316


>gi|288941215|ref|YP_003443455.1| PAS/PAC sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
 gi|288896587|gb|ADC62423.1| PAS/PAC sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
          Length = 905

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 115/679 (16%), Positives = 230/679 (33%), Gaps = 47/679 (6%)

Query: 175 FSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL 234
             G +G G     R ++          + F+       G   +           S     
Sbjct: 94  LPGIQGVGFARAIRSEDLAEHERSIRAEGFADYRVWPAGERPLYTA-IVYLEPFSGRNLR 152

Query: 235 RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294
                + S    +A  +     +   L          + D     L      +    +  
Sbjct: 153 AFGYDMFSEPVRHAAMERARDLDVAALSGKVHLVQETERDVQAGTLMYVPVYRVGMPVAT 212

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKY 354
             +     +     P        G     +  +   I   +Y+        P+ LL    
Sbjct: 213 IEQRRAALVGWVYSPYRMDDLMRGILGGWDRYNGRRIHLRLYAGDQPV---PASLLHDNE 269

Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
            +  +     GL                 +     + T       +          L   
Sbjct: 270 PAATEDWEPAGLDIPSIPIDFEGQRWTLDLTRPDLNETLFW---DIRVWGVATSGVLVTL 326

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII 474
            I                +  E       +  +         +L+    G+ +   +  I
Sbjct: 327 LIAALLFALDRSRRQTVRLVMELRAREEAEAALSESERNYRELLDNLHVGVVVHGPDTAI 386

Query: 475 LSTNRAVSKLFGYPVEDILRKP---FTVFLEQNT---PSVMNHYLTEILSLDLRQTLEKI 528
           L  N   S+L G  V+ +  +          +       +  + +T +++  +      +
Sbjct: 387 LLANPMASRLLGLAVDQLHGRTAMDPAWRFVREDGTPMPLAEYPVTRVVNTGVIVQDLVL 446

Query: 529 TLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKK-------- 576
            +   ++ +L  ++     L           +T  DI+  K  + +L   ++        
Sbjct: 447 GILEPEDIRLTWVQCEAYPLWDEPGRLQQIVVTFFDITARKSAETELERYRQHLESLVAS 506

Query: 577 ----------IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
                      AE  +  KS FLA +SHEIRTP+ AIIG + +++++    + +PR  ++
Sbjct: 507 RTQELSEARDAAEAANRAKSAFLANMSHEIRTPMNAIIGLNHLLQHE----VTDPRAHDW 562

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
              +  +   +L I++D+LD+SKIE+G + L     S    +    SL+   A +K + +
Sbjct: 563 LTKVGEAAAHLLRIIDDILDLSKIEAGHLTLETGEFSPRNLIERTFSLLGDRARQKGLRL 622

Query: 687 RTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRV 741
             + A ++P  ++ D   ++QI LN +SNAI F+  G +I +     + +     + L V
Sbjct: 623 HAAIAPDVPESLVGDALRLQQILLNFVSNAIKFSEQG-EIRVRAWTQAEDAEWMRLHLDV 681

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            D G+G+T  +  +  +PF Q   S   R  GTGLGL +A+ + +   G+  + S P +G
Sbjct: 682 ADQGIGLTAEQQARLFQPFAQGDESTTRRYGGTGLGLAIARRLANLMQGEVGVVSEPGRG 741

Query: 802 TLI--EIIFPLYDTSHPHD 818
           +     +      ++   D
Sbjct: 742 STFWASVRLRRSPSAAAPD 760



 Score = 45.0 bits (105), Expect = 0.050,   Method: Composition-based stats.
 Identities = 29/398 (7%), Positives = 86/398 (21%), Gaps = 36/398 (9%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID-------PNNHIGDLLKRQNT 142
                +   +    + +G    ++ G    D +     +           +  ++     
Sbjct: 381 GPDTAILLANPMASRLLGLAVDQLHGRTAMDPAWRFVREDGTPMPLAEYPVTRVVNTGVI 440

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
                             +   A P++         +                  +R  +
Sbjct: 441 VQDLVLGILEPEDIRLTWVQCEAYPLWDEPGRLQ--QIVVTFFDITARKSAETELERYRQ 498

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV----------SSLTEYYAHKDD 252
               L   +    S  ++  +  ++        M +++          + L ++      
Sbjct: 499 HLESLVASRTQELSEARDAAEAANRAKSAFLANMSHEIRTPMNAIIGLNHLLQHEVTDPR 558

Query: 253 VLKTEKYPLLTSEESSLPEQE--DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310
                      +        +  D   I     T +    + +N  + +F  L  R    
Sbjct: 559 AHDWLTKVGEAAAHLLRIIDDILDLSKIEAGHLTLETGEFSPRNLIERTFSLLGDRARQK 618

Query: 311 ------------LSAYFDEGENLTPETVDKCPIPFFVYSHG--NLFYANPSFLLLTKYKS 356
                         +   +   L    ++           G   +     +         
Sbjct: 619 GLRLHAAIAPDVPESLVGDALRLQQILLNFVSNAIKFSEQGEIRVRAWTQAEDAEWMRLH 678

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
           +D  +   GL+      +L    A       R         A    +    +  + +   
Sbjct: 679 LDVADQGIGLTA-EQQARLFQPFAQGDESTTRRYGGTGLGLAIARRLANLMQGEVGVVSE 737

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
           P   +  +     +        D        +++  +L
Sbjct: 738 PGRGSTFWASVRLRRSPSAAAPDGAARSEHAQLQPERL 775


>gi|315498055|ref|YP_004086859.1| pas/pac sensor hybrid histidine kinase [Asticcacaulis excentricus
           CB 48]
 gi|315416067|gb|ADU12708.1| PAS/PAC sensor hybrid histidine kinase [Asticcacaulis excentricus
           CB 48]
          Length = 512

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 96/383 (25%), Positives = 182/383 (47%), Gaps = 23/383 (6%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            + +     L +I+ ++ D I     +GII + N    ++FGY   + + +  T+ +  +
Sbjct: 7   SEAQHHSALLAAIVASSDDAIVSKTLDGIITTWNAGAERIFGYTAAEAVGQHITLIIPLD 66

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHD 560
                   + ++ S   ++     T+  TK   L+ + + +  +   +   +       D
Sbjct: 67  MHDEEYVIIGKVRSG--QRVEHFETVRRTKSGALIDISLTVSPVRDEAGRIIGASKIARD 124

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I+  K  + +L+       + +  + +F+A +SHE+RTP+ A+IG + ++      P  +
Sbjct: 125 ITRQKGIEAQLA-------EANRRRDEFMANMSHELRTPMNAVIGLAHILS---LSPNLS 174

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
            R   Y   + +SG  +L ++N+LLD+SKIE+G + L     +L E + + +S  ++ A 
Sbjct: 175 EREQSYVRVLKQSGENLLHLINNLLDVSKIEAGAIELETREFNLPELIEQTVSAPRVRAA 234

Query: 681 EKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---- 735
           EK +    ++   +      D   V+QI +N+L+NA+ FT +G +I +  +    E    
Sbjct: 235 EKGVGFGVTYGAQVREFYLGDPLRVQQILINLLANAVKFTDTG-RIDLRLSVVRTEAHCA 293

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            V   V DTGVG+   +L+   + F Q   S   R  GTGLGL +A+A+ +   G     
Sbjct: 294 RVRFEVMDTGVGIPLDKLDTIFEKFTQADASMTRRYGGTGLGLSIARALAEQMGGTLSAS 353

Query: 796 STPAKGTLIEIIFPL-YDTSHPH 817
           STP +G +     PL +D + P 
Sbjct: 354 STPGQGAIFTAELPLSHDPARPQ 376



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/251 (7%), Positives = 63/251 (25%), Gaps = 5/251 (1%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG-KTTLW 150
            G +   +    +  G  A + +G  +  +  +   D    I   ++        +T   
Sbjct: 33  DGIITTWNAGAERIFGYTAAEAVGQHITLIIPLDMHDEEYVIIGKVRSGQRVEHFETVRR 92

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
              G  + + + ++  P+        G     I           A     +++       
Sbjct: 93  TKSGALIDISLTVS--PVRDEAGRIIGASK--IARDITRQKGIEAQLAEANRRRDEFMAN 148

Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270
                          +          + + S +       +++L      L  S+  +  
Sbjct: 149 MSHELRTPMNAVIGLAHILSLSPNLSEREQSYVRVLKQSGENLLHLINNLLDVSKIEAGA 208

Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330
            + +    NL +  ++         +++   +           Y  +   +    ++   
Sbjct: 209 IELETREFNLPELIEQTVSAPRVRAAEKGVGFGVTYGAQVREFYLGDPLRVQQILINLLA 268

Query: 331 IPFFVYSHGNL 341
                   G +
Sbjct: 269 NAVKFTDTGRI 279


>gi|197118716|ref|YP_002139143.1| HAMP domain-containing sensor histidine kinase [Geobacter
           bemidjiensis Bem]
 gi|197088076|gb|ACH39347.1| sensor histidine kinase, HAMP domain-containing protein [Geobacter
           bemidjiensis Bem]
          Length = 694

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 89/397 (22%), Positives = 172/397 (43%), Gaps = 32/397 (8%)

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
           +E       S++E  SD I +I  +  +   N+   + FGY  +++L  P T  L     
Sbjct: 285 LERSEELYKSLMEDASDAIVVIGGDESVRMVNKMAEEFFGYEAKELLGLPLTKMLLLLNI 344

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL--SLRIIIKKLPFSSCYSLTMHDISEW 564
           S +               + +      K+   +   L     K    +       D++  
Sbjct: 345 SNIPKVHRIFREAAQGAHIAEEMQLCKKQGGAMVAMLHASSIKSGSENVVQAIFRDVTRE 404

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           ++    L  +     + +  K  FL   SHE++TPLT I+G+SE +         +   +
Sbjct: 405 REIILNLEKSSADLARLNRMKDSFLGLASHELKTPLTVIMGYSE-LITTDLADRMDKTVL 463

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           E    I  + + + +I+ D++D+S I+  ++ L  E + L+  +  +++ ++ + + ++ 
Sbjct: 464 EMVVNIANAASRLDNIIKDMVDVSMIDEKRLQLKVEDIQLNRLIEASVNELRFFFSMRKQ 523

Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT------------ 732
            +  +   +IP I  D   + Q+  NIL NAI FTP GG+I +ST+              
Sbjct: 524 EVVVNLDESIPTIRGDALRLMQLLSNILGNAIKFTPDGGKITVSTSAKYLLRGKGGAEGG 583

Query: 733 -----SNEEVILRVRDTGVGMTNYELEKAMKPFG-----QIPNSQQ--IRGEGTGLGLPL 780
                 +  + + V DTG+G+   +  +  + F      Q  +S +   + +G GLGL +
Sbjct: 584 GEGHEHHLFLEITVTDTGIGIDREDQLRVFEKFYEVGNIQEHSSGKVAFKAKGAGLGLSI 643

Query: 781 AKAMVDANMGKFYIFST---PAK--GTLIEIIFPLYD 812
           AK +VD + G+ ++ ST   P +  G+   I+ PL  
Sbjct: 644 AKGIVDMHGGEIWVESTGYNPERFPGSTFHILLPLAP 680


>gi|146313279|ref|YP_001178353.1| aerobic respiration control sensor protein ArcB [Enterobacter sp.
           638]
 gi|145320155|gb|ABP62302.1| PAS/PAC sensor hybrid histidine kinase [Enterobacter sp. 638]
          Length = 777

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 83/435 (19%), Positives = 179/435 (41%), Gaps = 17/435 (3%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L +          +L  +Q     +     I   +  +         ++ E
Sbjct: 81  EESRQRLSRLVQKLEEMRDRDLKL-NVQLKDNIAQLNQEISDREKAEAERQATLEQLKIE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             +  + + ++E +   L S L+A+ D +   N +      NRA+  L G   + ++   
Sbjct: 140 MKEREVTQIQLEQQSSFLRSFLDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLIHLK 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCY 554
                       +     ++   ++  T E+        +    +R +    ++      
Sbjct: 200 PQDVYSAEAAVKVIETDEKVFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGL 259

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+        +   E+ S  K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 260 MGFGRDITERKR-------YQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE 312

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     +Y   I  S   + +I ND++D+ K+E  K+ L  +PV     +++  +L
Sbjct: 313 LTS----EQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLDNQPVDFTGFLADLENL 368

Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
             L A +K +         +P  ++ D   ++QI  N++SNA+ FT  G ++++      
Sbjct: 369 SGLQAQQKGLRFVLEPTLPLPHKVVTDGTRLRQILWNLISNAVKFTQQG-EVVVRIRFDQ 427

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMGKF 792
            + +   V+D+G+G+   E +K    + Q+ +S   +   GTG+GL +++ +  +  G  
Sbjct: 428 GDMLHFEVQDSGIGIPQDEHDKIFAMYYQVKDSNGGKPATGTGIGLAVSRRLAKSMGGDI 487

Query: 793 YIFSTPAKGTLIEII 807
            + S   KG+   + 
Sbjct: 488 TVSSQQGKGSTFTLT 502


>gi|83745642|ref|ZP_00942700.1| Two component system histidine kinase / Two component response
           regulator [Ralstonia solanacearum UW551]
 gi|83727719|gb|EAP74839.1| Two component system histidine kinase / Two component response
           regulator [Ralstonia solanacearum UW551]
          Length = 668

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 96/378 (25%), Positives = 170/378 (44%), Gaps = 22/378 (5%)

Query: 446 KMEIE--VMQLCSILEATSDGIAIINREGIILST-NRAVSKLFGYPVEDILRKPFTVFLE 502
           + +      +L + L+A+   +  ++         N     +FG    ++L +       
Sbjct: 144 ETQQRVSQQRLLAALQASPISLYDVDNTMHFTWVHNP----VFGLQPHELLGRTVREVFG 199

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHD 560
           +   S +      +++      +E        +  +  + ++  +         +    D
Sbjct: 200 RRAASRLTEAGQRVIATGSPTRVEFAFRRRHTQRVVYDVVVMPLRDDTGEIIGLTNAAID 259

Query: 561 ISEWKQEK-------NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
           I+E +Q +          S A++ AE+ S  K DFLA VSHE+RTPL A++G+++++  +
Sbjct: 260 ITEHRQTEARRTQLLEAESRAREEAERASRLKDDFLATVSHELRTPLNAVLGWAQLLAMR 319

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
              P     +      I+RS    + +++DLLD+S I SGK+ L   PV L + +  A  
Sbjct: 320 ---PYDEAMFRRGLEAIERSARTQVHLIDDLLDMSAILSGKVPLEIGPVDLADVLERARE 376

Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
            ++  A +K+I I T +   +P +  D   +KQ+  N+L+NA+ FTP GG I +    + 
Sbjct: 377 TIEPMARQKQIAIDTEYPP-VPLLQGDAGRLKQVFWNLLANAVKFTPEGGHIRVCVQASP 435

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
              V   VRDTG+G+    L      F Q   S   R  G GLGL +AK +V+ + G+  
Sbjct: 436 EGLVA-TVRDTGIGIEPTFLPHVFDRFQQADLSSTRRHGGLGLGLAIAKQLVELHHGRIT 494

Query: 794 IFST-PAKGTLIEIIFPL 810
             S     GT + +  PL
Sbjct: 495 AASNGANLGTTMAVTLPL 512



 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/245 (11%), Positives = 64/245 (26%), Gaps = 17/245 (6%)

Query: 105 TIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLA 164
             G    +++G  + +V            G  +    +       +        V  D+ 
Sbjct: 181 VFGLQPHELLGRTVREVFGRRAASRLTEAGQRVIATGSPTRVEFAFRRR-HTQRVVYDVV 239

Query: 165 ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDI 224
            +P+     E  G     I           A   +L +  S   E  +  S ++ +    
Sbjct: 240 VMPLRDDTGEIIGLTNAAI--DITEHRQTEARRTQLLEAESRAREEAERASRLKDDFLAT 297

Query: 225 FSQQSPPPHLRMK--NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQ 282
            S +   P   +    ++ ++  Y                 ++   + +  D   I   +
Sbjct: 298 VSHELRTPLNAVLGWAQLLAMRPYDEAMFRRGLEAIERSARTQVHLIDDLLDMSAILSGK 357

Query: 283 YTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNL- 341
              +     L +  + + E +         A   E            P+P      G L 
Sbjct: 358 VPLEIGPVDLADVLERARETIEPMARQKQIAIDTEYP----------PVPLLQGDAGRLK 407

Query: 342 -FYAN 345
             + N
Sbjct: 408 QVFWN 412


>gi|162448456|ref|YP_001610823.1| two-component histidine kinase [Sorangium cellulosum 'So ce 56']
 gi|161159038|emb|CAN90343.1| two-component histidine kinase [Sorangium cellulosum 'So ce 56']
          Length = 846

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 104/636 (16%), Positives = 212/636 (33%), Gaps = 39/636 (6%)

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY 246
            R+  D  A  +RL K  +    I         E Y +         L  +        +
Sbjct: 229 LRLSEDSLARAQRLAKLGNWDWHIPSNELLWSDECYRMLGVSRDAGALTYE----RFLAF 284

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
              +D         L                 N  + +       ++         +   
Sbjct: 285 IHPEDREGVIRSVDLALQGTLPYCVDYRIVRPNGEERSLHTEADVIRAEDGSPLRMIGTA 344

Query: 307 NHPSLSAYFDEGENLTPE----TVDKCPIPFFVYS---HGNLFYANPSFLLLTKYKSVDD 359
              +     D    L+ E      +      F       G   Y NP+ L  T Y     
Sbjct: 345 LDVTEQRRADRALRLSEERLRMIAEHASDVIFHIRLGPEGGYEYINPAVLEHTGYPPAAW 404

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
            E      TL+    +   +A    M     R       R    +W   +          
Sbjct: 405 YENPELFVTLIHPEDVGRYHAFVEHMAAAGGRLTFRIIDRSGRTRWVSTHITIQHDEHGN 464

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
                  +      +  D +      ++  E   L +++E +  GI +++R G  ++ NR
Sbjct: 465 PIAGIGISRDVTTEKLADEEREQLLGQLAAERRWLHAVIERSPVGILLLDRAGAQIARNR 524

Query: 480 AVSKLFGYPVEDILRKPFTVFLE-QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
              +L G         P    L   +   + +       +L    T  +       +  +
Sbjct: 525 RAQELAGTDSP--PGLPGAWCLCLPDGQPLTDEEQPSASALRGEVTSSRELSLRRADGSM 582

Query: 539 LSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
           L++      +   +       +   DI+  K+ +                K ++ + V+H
Sbjct: 583 LAVLASAGPIVDGNGKLLGAVVVFDDITRLKELE--------------RLKEEWTSVVAH 628

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           +++ P+T IIG++  ++ +             A +I  S   +  +V+DL DIS+IES +
Sbjct: 629 DLKQPVTTIIGYATQLERKPQVTTA---VKTRAGHILASAKRLGRMVSDLTDISQIESRR 685

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714
           + +   P+     V   +  ++     + + + +     IP + AD   V+Q+  N++SN
Sbjct: 686 LAIERAPIDPRALVEAVVERMESEIEGRAVDVESR--GEIPIVHADAGRVEQVLSNLISN 743

Query: 715 AIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           A+ +      I ++     +  V + +R++G G+   +L    + F +    ++    G 
Sbjct: 744 AVKYGDPEAPIQVALERRGDA-VQISIRNSGRGIPAQDLPLLFERFFRGKAKEERVV-GL 801

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           GLGL +AK +V+A+ G+ ++ S     T      P+
Sbjct: 802 GLGLYIAKGLVEAHGGRIWVESPEGGRTTFHFTLPV 837



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 46/478 (9%), Positives = 114/478 (23%), Gaps = 43/478 (8%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMI--GMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            +   G  + I+  + +  G               +     +   +   + +       G
Sbjct: 379 RLGPEGGYEYINPAVLEHTGYPPAAWYENPELFVTLIHPEDVGRYHAFVEHMAAAG---G 435

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           + T   I+ +     +       +  +       G GI      +       ++L  + +
Sbjct: 436 RLTFRIIDRSGRTRWVSTHITIQHDEHGNPI--AGIGISRDVTTEKLADEEREQLLGQLA 493

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
                                        R  + V   +       D    +      ++
Sbjct: 494 A--------------------------ERRWLHAVIERSPVGILLLDRAGAQIARNRRAQ 527

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
           E +  +        L                +E     + R   + S             
Sbjct: 528 ELAGTDSPPG----LPGAWCLCLPDGQPLTDEEQPSASALRGEVTSSRELSLRRADGSML 583

Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
                    V  +G L  A   F  +T+ K ++ ++         D  +           
Sbjct: 584 AVLASAGPIVDGNGKLLGAVVVFDDITRLKELERLKEEWTSVVAHDLKQPVTTIIGYATQ 643

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
           L R  +   A   R   I  + +    M     + +      +       +         
Sbjct: 644 LERKPQVTTAVKTRAGHILASAKRLGRMVSDLTDISQIESRRLAIERAPIDPRALVEAVV 703

Query: 446 KMEIEVMQLCSI-LEATSDGIAIINREGIILST-NRAVSKLFGYPVEDILRKPFTVFLEQ 503
           +     ++  ++ +E+  +   +    G +    +  +S    Y   +   +        
Sbjct: 704 ERMESEIEGRAVDVESRGEIPIVHADAGRVEQVLSNLISNAVKYGDPEAPIQVALERRGD 763

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL----SLRIIIKKLPFSSCYSLT 557
                + +    I + DL    E+   G  KEE+++     L I    +         
Sbjct: 764 AVQISIRNSGRGIPAQDLPLLFERFFRGKAKEERVVGLGLGLYIAKGLVEAHGGRIWV 821



 Score = 46.2 bits (108), Expect = 0.022,   Method: Composition-based stats.
 Identities = 45/376 (11%), Positives = 97/376 (25%), Gaps = 49/376 (13%)

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE-SFEYLSHRNHPSLSAYFDEGENL 321
                                +       + + S   S           ++A        
Sbjct: 6   RGRGDERGGPSRERHRGDPPASADTLARAVADASMALSRAGDDGPQQAIVAAAARLLHVD 65

Query: 322 TPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYK--SVDDIEIAGGLSTLLDAPKLSDNN 379
                D   +P   ++ G +  A  S   L   +   +D   +AG  + L  A    ++ 
Sbjct: 66  IACLYDVAQVP---HTLGLVACAGGSAGSLDPLRRLPLDAPSLAGAAARLNIAQVAPEDE 122

Query: 380 AIKPV----MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN---- 431
           +   +     L R      A +  +      R   L  T  P     +  E         
Sbjct: 123 SADALLDAGHLRRHCGCTRAFAIPIAFAGTLRAVLLCATAQPDLPQAELVEIAVALSSLF 182

Query: 432 ----------GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII------------- 468
                            +      ++E    QL + +       A +             
Sbjct: 183 GMALAAPELHAQRARIEELERENHELERSREQLHATIAEARQAEAALRLSEDSLARAQRL 242

Query: 469 ----NREGII----LSTNRAVSKLFGYPVE--DILRKPFTVFLEQNTPSVMNHYLTEILS 518
               N +  I    L  +    ++ G   +   +  + F  F+       +   +   L 
Sbjct: 243 AKLGNWDWHIPSNELLWSDECYRMLGVSRDAGALTYERFLAFIHPEDREGVIRSVDLALQ 302

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKK 576
             L   ++   +    EE+ L     + +    S      T  D++E ++    L  +++
Sbjct: 303 GTLPYCVDYRIVRPNGEERSLHTEADVIRAEDGSPLRMIGTALDVTEQRRADRALRLSEE 362

Query: 577 IAEKESSHKSDFLARV 592
                + H SD +  +
Sbjct: 363 RLRMIAEHASDVIFHI 378


>gi|159901363|ref|YP_001547610.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159894402|gb|ABX07482.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 884

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 93/383 (24%), Positives = 177/383 (46%), Gaps = 33/383 (8%)

Query: 447 MEIEVM---QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
           +  +     Q  +IL++ +D + + N +  I+  N A   +   P+++++ + F   LE 
Sbjct: 515 LRHQEEVSSQNNAILQSLNDAVIVFNLDRNIILANAAAESILDRPLDELVTQSFDELLES 574

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
               +    L  +L+       + I +    +   ++L  ++ +        L   DI+ 
Sbjct: 575 LNIKLPGDPLGAVLNNPDATQTQGIIIKRATQSISVTLVPVMTERGELLGACLIGRDITR 634

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
                           +    K++F+  VSHE+RTP+T+I G+++++     G + N   
Sbjct: 635 --------------EVESDRLKTEFIGTVSHELRTPMTSIKGYTQLLAMGSLGEV-NSTQ 679

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            E+ N I  +   ++ I+NDLLDI+KIE+G + L    + + + +S  +   +    +++
Sbjct: 680 KEFLNTIAHNSERMIAIINDLLDITKIETGSVELQMARLMVADVMSSVVGNARAEITQRQ 739

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST-------------- 729
                S A N+P I +D+  ++Q+A N+LSNAI +TP+GG+I +                
Sbjct: 740 QEFSLSLAPNLPTIWSDMERIRQVASNVLSNAIKYTPNGGKISVKAFEINFNDIPNKQRE 799

Query: 730 -THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                   + L V+D+GVG+   E EK    F +  N  +I   GTGLGL L + ++   
Sbjct: 800 GLQVGRRYIALAVQDSGVGIDPSEHEKVFDRFYRTENPLKIEAGGTGLGLSLVRPLIQLM 859

Query: 789 MGKFYIFSTPAKGTLIEIIFPLY 811
            G+ ++ S   +GT    I P+ 
Sbjct: 860 GGRIWLESAVNQGTTFTFIMPVA 882


>gi|46562168|ref|YP_009127.1| sensory box histidine kinase [Desulfovibrio vulgaris str.
            Hildenborough]
 gi|46447705|gb|AAS94371.1| sensory box histidine kinase [Desulfovibrio vulgaris str.
            Hildenborough]
          Length = 1037

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 109/797 (13%), Positives = 239/797 (29%), Gaps = 74/797 (9%)

Query: 70   SENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLC-DVSDILHID 128
            SE           V      D  G    ++ +     G  A   +      + +D   + 
Sbjct: 265  SEADQRTLTELSPVGIV-TFDPAGRPSYLNRQGRDIAGMTADDPLPAFFALEDTDGGSLI 323

Query: 129  PNNH-IGDLLKRQNTWYGKTTLWP-IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHV 186
             ++     + +   T        P  +GT   + ++   L +    R             
Sbjct: 324  GDDSPFVRVFREGLTLTDFEAWLPMPDGTRKLLSVNATPLVVGREQRN---HGVVATFED 380

Query: 187  NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF-----SQQSPPPHLRMKNKVS 241
                   +   ++ +K+F+ L  +      +      +      S        R +    
Sbjct: 381  VTERRMAQERLQQSEKRFATLFRLSPDSIVLSSFDTGLVVDVNDSFCQLHGLGRDEVVGR 440

Query: 242  SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLN--QYTKKQYFGTLQNNSKES 299
            SL +   + D         L+  +   +  +    ++       +       +   +   
Sbjct: 441  SLRDIGLYDDPAQLDGIITLVREKGRVVDLELRARSLKGEELYLSLSSQLMVIGEANYRL 500

Query: 300  FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVD 358
                             E   L    +D  P+   +  + G     N +F  +    + +
Sbjct: 501  TVVRDMTERYRAEQELHEKRLLLEGILDSVPVSIFWKDAAGRFMGCNRTFAQMVGLDTPE 560

Query: 359  DIEIAGGLS-TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
             +         LL     +   A + VM      T       +  + +       +    
Sbjct: 561  TVIGKDDADLGLLPGLAETFREADRKVMA-----TLSPMLGYVERLAFADGRERMLETSK 615

Query: 418  FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILS 476
                      +   G+  +  ++   + ++     +   +   + + +A+++  +     
Sbjct: 616  LPLLAADGRAVGVLGLIRDITESLAAQEQLRQSEERFSRLFRYSPEAMALVDMADQRFAD 675

Query: 477  TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
             N A  +L GY   +++ +           +     L  I +            G TKE 
Sbjct: 676  VNHAFERLTGYEASELVGRGTIEMAFYTDATTRAELLRRIHTEGF--VDNYEFEGRTKEG 733

Query: 537  KLLS--LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
              +   +   I  +         + DI+E K+ +  +   +K+            A ++H
Sbjct: 734  TPMPCSISCSILSIGDRRFILGLVRDITEMKRMQEVMIQTEKMISVGGIA-----AGIAH 788

Query: 595  EIRTPLTAIIGFSEVIKNQRFGP------------LGNPRYIEYA---------NYIDRS 633
            EI  PL  I+  +  +  +                L      +Y            I  +
Sbjct: 789  EINNPLGIILQAAHNLAQRTRPDFAKNLDVATRVGLDMDALRQYMAQRKLDVFIEDIRDA 848

Query: 634  GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL------VQLYANEKRILIR 687
                  I+  +LD S+    K      P  +   + +A++L      ++   + +RI I 
Sbjct: 849  AVRASAIIRHMLDFSRSGGSK----RVPCDVTSILDKAVALAGSDYDLKKSYDFRRITIT 904

Query: 688  TSFANNIPRILADLRSVKQIALNILSNAIHF---TPSGGQ---IIISTTHTSNEEVILRV 741
              +   +P +      ++Q+ LN+L NA H    +   G+   I +         V++ V
Sbjct: 905  RDYEAGLPLVDCSPTELEQVLLNLLRNAAHALAESHRDGEGPAIHLRVRRQDE-TVVIDV 963

Query: 742  RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA-NMGKFYIFSTPAK 800
            +D G G+      +  +PF            GTGLGL ++  +V   + G   + + P  
Sbjct: 964  QDNGPGIPVALQRRIFEPFYTTKPPGV----GTGLGLSVSYFIVTKGHGGNLTVVTPPEG 1019

Query: 801  GTLIEIIFPLYDTSHPH 817
            GTL  I  PL  ++  H
Sbjct: 1020 GTLFRIELPLQGSTEAH 1036



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/407 (9%), Positives = 89/407 (21%), Gaps = 22/407 (5%)

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247
                   +     +        +              +             + +     
Sbjct: 10  TESIAREEVLVLALENSYIGRSARASAQRKLDAYIRNGTFDQVFLFNLEGEAILAGDPSL 69

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
           A + +V     +    +  ++L       +                 +           N
Sbjct: 70  AGRVNVADRRYFSEAAAGRAALETVVVSRSTGKPSLVMASPLRAF--DGTVVGVVAGVTN 127

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
             + +    EG ++            F+     +    P++L          +   GG S
Sbjct: 128 IETFAKAILEGSHIGRTG------GAFITDTDGVVLGLPAWLSAGSLG----LHEGGGFS 177

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW-----NRENSLAMTFIPFEKAN 422
               A         +     R      + S       W       E  +          +
Sbjct: 178 DAHVAALKQSAETGEVYRFTRGGNHRASYSRLNGATHWLLTLEADEGEVLAPARRLAAVS 237

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
                +    +       R     +        ++ E +  GI   +  G     NR   
Sbjct: 238 GSILLVTLITVALILGVLRRAMVSLRHSEADQRTLTELSPVGIVTFDPAGRPSYLNRQGR 297

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNH--YLTEILSLDLRQTLEKITLGSTKEEKLLS 540
            + G   +D L   F +        + +   ++            E          KLLS
Sbjct: 298 DIAGMTADDPLPAFFALEDTDGGSLIGDDSPFVRVFREGLTLTDFEAWLPMPDGTRKLLS 357

Query: 541 LRIII---KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
           +        +   +     T  D++E +  + +L  ++K        
Sbjct: 358 VNATPLVVGREQRNHGVVATFEDVTERRMAQERLQQSEKRFATLFRL 404


>gi|239825976|ref|YP_002948600.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Geobacillus sp. WCH70]
 gi|239806269|gb|ACS23334.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Geobacillus sp. WCH70]
          Length = 581

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 103/493 (20%), Positives = 195/493 (39%), Gaps = 38/493 (7%)

Query: 330 PIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388
           P    +   +G L   NP    +  YK  + I       T   AP   +    K     +
Sbjct: 108 PDVILLLDINGLLISGNPEVRKMLGYKPREYIGKHF---TQFIAPDQIEKAKKKFERTLK 164

Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
            +    +    L     N +  + M F      +          I     +    ++++E
Sbjct: 165 GE----SCEYDLQVKHKNGK-IIDMHFKTIPIIHGN-RLKGIYVIGQNMTELNRYRKELE 218

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
               +   IL + ++G+  I++ G I+  N A  ++ GY  E+ + K     +       
Sbjct: 219 NLYHKHTLILNSIAEGVCGIDKHGNIVFWNPAAERMTGYKAEEAIGKASHDIIHHTKKDG 278

Query: 509 MNHYLTE----ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS---LTMHDI 561
             + + E    +   D +       +   K+     +   +  +  +       LT  DI
Sbjct: 279 TPYSIDECPIDLAIQDGKTYHISEDIFWKKDGTHFPVSYTVTPVLENGAVVDAVLTFTDI 338

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           +E K+ +  +  ++K++           A ++HEIR PLTAI GF ++++ +        
Sbjct: 339 TELKKTEEFIRTSEKLSVA-----GQLAAGIAHEIRNPLTAIKGFIQLLQFEL------D 387

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
               Y + I+     +  I+ +LL ++K ++ K    F    +   +    +L++     
Sbjct: 388 VKKPYLHIIESEIQRIELILGELLVLAKPQATK----FTKSDIGVLLQHVTTLLETQGIL 443

Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
             I I T    ++P I  D   +KQ+ +N L NA+    SGG I I         V++R 
Sbjct: 444 HNIQIITKIDPSLPLIECDENGLKQVFINFLKNAMEAMKSGGHIFIEAQKKDEYSVLIRF 503

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            D G G+   +LEK  KPF         + +GTGLG+ ++K +++ + G   I S   KG
Sbjct: 504 IDEGCGIPKEQLEKIGKPFFTT------KEKGTGLGIMISKKIIEDHGGTMSIMSEENKG 557

Query: 802 TLIEIIFPLYDTS 814
           T +E+  P+  ++
Sbjct: 558 TTVEVTLPIRVSA 570



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 34/125 (27%), Gaps = 12/125 (9%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN------HIGDLLKRQNT 142
           ID HG +   +    +  G  A + IG    D+      D          I   ++   T
Sbjct: 238 IDKHGNIVFWNPAAERMTGYKAEEAIGKASHDIIHHTKKDGTPYSIDECPIDLAIQDGKT 297

Query: 143 W-YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
           +   +   W  +GT  + P+     P+   N                         +  +
Sbjct: 298 YHISEDIFWKKDGT--HFPVSYTVTPVL-ENGAVVDA--VLTFTDITELKKTEEFIRTSE 352

Query: 202 KKFSH 206
           K    
Sbjct: 353 KLSVA 357



 Score = 38.1 bits (87), Expect = 7.2,   Method: Composition-based stats.
 Identities = 9/54 (16%), Positives = 19/54 (35%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNT 142
           +D +G L   + E+ K +G    + IG           I+      +   +  +
Sbjct: 114 LDINGLLISGNPEVRKMLGYKPREYIGKHFTQFIAPDQIEKAKKKFERTLKGES 167


>gi|271499646|ref|YP_003332671.1| integral membrane sensor hybrid histidine kinase [Dickeya dadantii
           Ech586]
 gi|270343201|gb|ACZ75966.1| integral membrane sensor hybrid histidine kinase [Dickeya dadantii
           Ech586]
          Length = 962

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 93/382 (24%), Positives = 158/382 (41%), Gaps = 28/382 (7%)

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKP 496
           +    N  ++E        I+ +   GI I+   +G  + +N            +   + 
Sbjct: 354 LPAERNAFQLEENEQFNRKIVASAPVGICILRISDGTNILSNELAHNYLSLLTYEDRVRI 413

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556
               +     S     +                   T     L +  +  +    +    
Sbjct: 414 IR--IICEQQSKSLDVV-------------------TGRNHHLQISFVHSRYRNENVAIC 452

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            + D+S   + +  L      AE+ S  KS FLA VSHE+RTPL  IIG  ++++ +   
Sbjct: 453 VLLDVSARVRMEESLQEMANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKSLP 512

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
              N         +  S  L+L I++D+LD SKIES ++ +     +  E ++  +S   
Sbjct: 513 SDAN----RLVEAMQNSSALLLKIISDILDFSKIESEQLKIEPSEFAPREVINHIVSNYL 568

Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
               +KR+ +       +P +++ D   ++Q+  N+LSNAI FT +G  I+     +   
Sbjct: 569 PLVVKKRLELYCYIDPRVPLQLMGDAVRLQQVLSNLLSNAIKFTDTG-CIVFQVVCSDEG 627

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            ++ +VRDTGVG+    + K   PF Q     Q   +GTGLGL + + +V    G   I 
Sbjct: 628 YLVFKVRDTGVGIDTRAVMKLFDPFFQAGTGVQRHFQGTGLGLAICEKLVSLMDGDITIE 687

Query: 796 STPAKGTLIEIIFPLYDTSHPH 817
           S P  G+   I  PLY  S+P 
Sbjct: 688 SEPGLGSEFGIRIPLYRASYPQ 709


>gi|262382051|ref|ZP_06075189.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
 gi|262297228|gb|EEY85158.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
          Length = 793

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 107/517 (20%), Positives = 198/517 (38%), Gaps = 52/517 (10%)

Query: 334 FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA-PKLSDNNAIKPVMLYRSD-- 390
            +  H  L +AN  +  +  Y   +          L    P L      +   +   +  
Sbjct: 25  LLDEHFTLLWANDFYYDMIGYLKEE-------YEALFHNKPDLYFKGYDEAWNILSKNVY 77

Query: 391 ----RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
                        +       +    +T    ++             + EDV  R  ++ 
Sbjct: 78  ETIANKASGYETVIQMPTRKGKRWTKITSTFTDQLQDGIPISYTVMTDVEDVMRRRIEQT 137

Query: 447 MEIEVMQLCSILEATSDGI----AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
           +           +     I       +    +L  N       G      L       L+
Sbjct: 138 I---------TYDNIPGFISKHKVHKDGSFTLLEANDKYMDFSGIDKNSFLSFSPFSRLD 188

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII---IKKLPFSSCYSLT-- 557
           + + + MN +++ +L     + +  +     K      L++    I        Y +   
Sbjct: 189 ETSRNTMNAHISCMLKG---EPVHFVIQSKDKNGNGAWLQLNGECIGWEGDEPIYLIVYI 245

Query: 558 -MHDISEWKQEKNKLSHAKKI-------AEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
            + DI+E ++ + KL    K        AE+ +  KS+FLAR+SH+IRTP+ AI+G + +
Sbjct: 246 NITDITEQRELQKKLEKQSKQLKEALKSAEQANQAKSNFLARMSHDIRTPMNAIMGMATI 305

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
            K        + R ++    I+ +  L+L ++N++LD+SKIESG++ L  +  ++ E + 
Sbjct: 306 AKAHVD---EHERILDCMEKINGASKLLLSLINEVLDMSKIESGRLILSEDEFNVGELLQ 362

Query: 670 EAISLVQLYANEKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
           + + ++Q     K+  +     N     +  D + +KQ+ +NILSNAI +TP  G+I I 
Sbjct: 363 DLVVMMQPEIKNKQQTLNIHVKNLRHENVKGDTQRIKQVLMNILSNAIKYTPENGRITIE 422

Query: 729 TTHTSN----EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
                             D G GM    L+K  +PF +  + +  R +GTGLG+ ++  +
Sbjct: 423 IYEKDPHNGIGNYQFVFEDNGRGMKPEFLDKIFEPFERASDDEIKRIQGTGLGMSISHKI 482

Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPLY-DTSHPHDCI 820
           +    G   + S   KG+   I  PL      P D I
Sbjct: 483 IQMMGGDIKVESEYGKGSRFTIDMPLVCRDQKPDDKI 519


>gi|221133435|ref|ZP_03559740.1| PAS/PAC sensor hybrid histidine kinase [Glaciecola sp. HTCC2999]
          Length = 1029

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 113/646 (17%), Positives = 222/646 (34%), Gaps = 38/646 (5%)

Query: 184 VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVS 241
             +  ++        +  +  S + E+ +    +  E   I    +         K  + 
Sbjct: 117 CTLLTIEKVNPLASNKSTELLSQVIELSENTFFLTDENNKIIWTNTSATKQTGYTKEILK 176

Query: 242 SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFH--TINLNQYTKKQYFGTLQNNSKES 299
            +   +   D+        L T+    +    +      N   Y  K     +  +S ++
Sbjct: 177 GMNPLFRVTDNTSIAVLKRLKTAFRDKIDFNGEIQLYKANKEAYWVKLTVKPVSLDSGKT 236

Query: 300 FEYL---SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYK 355
              L          +        NL    +D         +  G +   N   + L  ++
Sbjct: 237 GFLLSEYDITPRKLMEHELRAKTNLQRAILDSAQQIIISTNANGAIESLNEFAIELLGWQ 296

Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL----------HTIQW 405
             + +     +   +   +                     A   L           T + 
Sbjct: 297 PYE-LVHKSSMDVFIRRAEYRRFAQHIASQHEYHIMENFEAFHELTNKLDKVEFAFTFET 355

Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465
              + L +  I     ++  +      I  +     I K + +     L         G 
Sbjct: 356 KDRSLLTIELIVTPLFDRGGKLEGYLYIGKDITHVEILKAQTQRSQALLEETSRIAQLGS 415

Query: 466 AIINREGIILSTNRAVSKLFGYP-VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
             ++     L  +    ++   P   DI       F       ++   +   +       
Sbjct: 416 WELDLRTNELYWSDETYRIHELPLSADINVTDGINFYAPEARPIIQDAVNNAIEFGTPWD 475

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSCYS---LTMHDISEWKQEKNKLSHAKKIAEKE 581
           L+   +  T +   + +R I       S       T  +I+  K+ +         A + 
Sbjct: 476 LQLPFI--TAKNNHIWVRAIGAAEFKDSKVISIKGTFQNITSIKETEQ-------RANEA 526

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
           +  KSDFLA +SHEIRTP+  IIG +E+++          +  EY   I RS   +L ++
Sbjct: 527 NQSKSDFLANMSHEIRTPINGIIGMNELLQKTSLTT----QQTEYTQAIQRSSQALLGLI 582

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701
           ND+LD SKIE+GK+NL+ + V++DE +      +Q  ++ K + +       +  I++D 
Sbjct: 583 NDILDFSKIEAGKLNLNVKKVAMDEFMENIYKEIQPLSDAKNLQLDIQVCP-LVTIMSDP 641

Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761
             ++QI +N+ SNAI FT  G  I IS +    + +   + DTG+G+ + +  +  + F 
Sbjct: 642 MRLRQILINLCSNAIKFTEYGS-IRISFSVIDEQYLRFTISDTGIGIPSEKSSQLFEKFN 700

Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           Q+  S +    GTGLGL +++ +     G         +G      
Sbjct: 701 QLDTSSKRSIGGTGLGLTISQQLSQLLGGAIGFNPEYQEGAEFWFT 746


>gi|254440930|ref|ZP_05054423.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Octadecabacter antarcticus 307]
 gi|198251008|gb|EDY75323.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Octadecabacter antarcticus 307]
          Length = 817

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 97/493 (19%), Positives = 194/493 (39%), Gaps = 15/493 (3%)

Query: 335 VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394
           V+       A+  +L            +       L A           V L        
Sbjct: 80  VFEDLRTDSASRKYLDSVIVFLEQAATLIDTTDDELVAQLPELIVLTDQVSLVVRALANS 139

Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV--M 452
           +      T    R                    +    I    ++ R+  R+ E      
Sbjct: 140 SLELYAQTADEQRAEVAGTLTQLALATAALIGVLALAIIYLNLLNARVYHREREKNQTMS 199

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
           ++ S++  + DG+ + + +G IL  + A   +FG+    +L       +  +     N  
Sbjct: 200 RMQSVMGTSLDGVVVCDADGKILEFSPAAEGIFGHSKAAVLDLNIASVIVPDHLLHANEA 259

Query: 513 -LTEILSLDLRQTLEK---ITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQ 566
            +  +      + + K         K+  +  + + I+         +   + DIS    
Sbjct: 260 GMERMRIGGDMRVIGKGRVRLEAKHKDGHIFPVELAIQNAKTDEGTIFISFLRDISHEVM 319

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
            + +L  A+  A      K++FL+ +SHEIRTPL  ++G   ++++       N     Y
Sbjct: 320 AEAELVTARDKALASEKMKTEFLSTMSHEIRTPLNGLLGNMNLLRDTEL----NENQDRY 375

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
             Y++ SG L+L  V+D+LDI++ ++GK+N   EPV++ E + + +      A +    +
Sbjct: 376 VGYMETSGRLLLSHVSDVLDITRYDAGKLNTRIEPVNISELLQDIVDNQASTAFQNETSL 435

Query: 687 RTS-FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ-IIIS-TTHTSNEEVILRVRD 743
                   +  +L+DL  ++ + +N++ NA+ FT  G   + I         E+++++ D
Sbjct: 436 VWGWCGVKMDWVLSDLDRLQHVMMNLIGNAVKFTRRGKVSVTIENVGEGDAAELLVKIID 495

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TG GM+   +++    F     +      GTGLGL +AK  V+A  G+  + S   +G+ 
Sbjct: 496 TGQGMSEDLIKRVFDDFVTGNTAYDRDVGGTGLGLSIAKRFVNALGGEIGVESIVGEGST 555

Query: 804 IEIIFPLYDTSHP 816
             +  P+++   P
Sbjct: 556 FWVRLPVHEAEAP 568



 Score = 38.5 bits (88), Expect = 4.4,   Method: Composition-based stats.
 Identities = 20/143 (13%), Positives = 39/143 (27%), Gaps = 13/143 (9%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI---DPNNHIGDLLKRQNTWYGK 146
           DA G + E S       G+    ++ + +  V    H+   +        +       GK
Sbjct: 216 DADGKILEFSPAAEGIFGHSKAAVLDLNIASVIVPDHLLHANEAGMERMRIGGDMRVIGK 275

Query: 147 TTLW----PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
             +       +G     P++LA     +       F  F  +     +    A       
Sbjct: 276 GRVRLEAKHKDGHIF--PVELAIQNAKTDEGTI--FISF--LRDISHEVMAEAELVTARD 329

Query: 203 KFSHLHEIKKGHSSVEKEKYDIF 225
           K     ++K    S    +    
Sbjct: 330 KALASEKMKTEFLSTMSHEIRTP 352


>gi|326799510|ref|YP_004317329.1| multi-sensor signal transduction histidine kinase [Sphingobacterium
           sp. 21]
 gi|326550274|gb|ADZ78659.1| multi-sensor signal transduction histidine kinase [Sphingobacterium
           sp. 21]
          Length = 677

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 75/376 (19%), Positives = 152/376 (40%), Gaps = 30/376 (7%)

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
           +    +  +        +I+  +  GI  +N  G ++ TN    K+ GY   ++++    
Sbjct: 324 ERLRAEEALRKSEESYRAIVNQSIVGILRLNFRGEVVFTNDQFCKMLGYSPSEMMKLTVL 383

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----Y 554
             +        N   + +++       E       K   L+ +   +  +  S       
Sbjct: 384 DLMYPEDLERNNLLFSRMVAEGTP--YEIEKRLICKNGSLIWVNNHVSPIFNSDGKPESA 441

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
            +   D++  K  +                K DF+   SHE++TPLT+I  +++++K   
Sbjct: 442 VVVSVDVTRQKAVE--------------KMKDDFIGVASHELKTPLTSIKAYTQLLKK-- 485

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                +     + N + +  + + ++V  LLD S I  G + L    + L+E + + I  
Sbjct: 486 --STTDDTPASFINKLSKQVDRLTNLVYLLLDTSNISGGHLMLQLGDIDLNELIDDCIQD 543

Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
           +Q  + + +++        IP ++AD   + Q+  N++SNA+ ++P GG + I    T  
Sbjct: 544 LQPISIDHKLIFHKE---KIPHLIADKNRINQVLTNLISNAVKYSPEGGAVHIKA--TDM 598

Query: 735 EE-VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
              V + V+D GVG+   +  K    F ++ +       G GLGL +   +V  + G   
Sbjct: 599 GYAVKVSVQDYGVGIAAEDQSKIFNRFFRVTSKGNDNISGIGLGLYIVSEIVKKHNGILG 658

Query: 794 IFSTPAKGTLIEIIFP 809
           + S P +G       P
Sbjct: 659 VESVPGQGATFFFEIP 674



 Score = 45.8 bits (107), Expect = 0.033,   Method: Composition-based stats.
 Identities = 20/180 (11%), Positives = 55/180 (30%), Gaps = 17/180 (9%)

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI----AIINR----- 470
             ++   +  + G       +   + K+  E     ++  +  +G      I +R     
Sbjct: 17  DRSRQGHSSVRRGNATSSSLSTQRRFKLSDETYY--NLFNSIDEGFCIIEVIFDRQERPV 74

Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530
           +   +  N    +L G    D   +     +     ++       I      +  + +  
Sbjct: 75  DYRFIEVNEPFEQLTGI--VDAEGRRMRD-IAPLHENLWFEVYGRIALTGKPERFQMVAS 131

Query: 531 GSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
                 ++  +       P  +  ++   DI+  ++E   L+    + E+ S   S  +A
Sbjct: 132 QLD---RIYDVYAFRVGEPADNQVAILFKDITAQRREDLDLAELAGMGEQLSRADSAEVA 188


>gi|299148913|ref|ZP_07041975.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
 gi|298513674|gb|EFI37561.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
          Length = 657

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 117/500 (23%), Positives = 185/500 (37%), Gaps = 20/500 (4%)

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
           S    E        +    I  + Y    G   ++N  F  L   K    I         
Sbjct: 36  SELIRENSQEILSVLAAHQIALWEYDIITGKCSFSNDYFFTL-GLKDAGIIFEDIDDFYR 94

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
              P+  +        +  SD        R+  I    +           K +       
Sbjct: 95  FIHPEDIEFYKQAFAEMLSSDSKTS--QIRVRCISEQGKVIWLEDHFLSYKESCESHPGK 152

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
                         ++ ++        I+EA  + I I +    I     A   +  +PV
Sbjct: 153 LLAYTVNVTSQCEKEQHIKYLEEYNRKIIEALPEFIFIFDDNFFITDVLMAPGTILLHPV 212

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
           E +               +    + E L     + +E        +  L   +  I    
Sbjct: 213 EVLRGADGRSIYSPEVSDLFICNIRECLRDGKLKEIEYPLEV---DGSLHYFQARIAPFE 269

Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
             +     +HDI +  Q   +L  AK+ AE     KS FLA +SHEIRTPL AI+GFSE+
Sbjct: 270 -GNRVLALIHDIGDRIQRSQELIEAKRRAEDADKMKSVFLANMSHEIRTPLNAIVGFSEI 328

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           I             +EY   I R+ NL+L ++ND+LD+S+IESGK  +HF+ V +   V 
Sbjct: 329 IA----VTESEEEKMEYLEIIQRNSNLLLQLINDILDLSRIESGKSEMHFQQVEIAGLVE 384

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
           E   + QL      + ++            D   V Q+  N LSNAI  T  G  I +  
Sbjct: 385 EVEKVHQLKMKS-NVELKVIRPEGEYWTSTDRNRVMQVLFNFLSNAIKNTEKGS-ITLGL 442

Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
            H     + L V DTG G++  +L +    F ++        +GTGLGL + K++V+   
Sbjct: 443 KHE-GSWLKLYVSDTGCGISKEKLPQIFTRFEKL----NDFVQGTGLGLSICKSIVERLG 497

Query: 790 GKFYIFSTPAKGTLIEIIFP 809
           G+  + S   +G+   +  P
Sbjct: 498 GRIEVTSELGQGSTFALYLP 517


>gi|254440106|ref|ZP_05053600.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Octadecabacter antarcticus 307]
 gi|198255552|gb|EDY79866.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Octadecabacter antarcticus 307]
          Length = 803

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 97/493 (19%), Positives = 194/493 (39%), Gaps = 15/493 (3%)

Query: 335 VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394
           V+       A+  +L            +       L A           V L        
Sbjct: 67  VFEDLRTDSASRKYLDSVIVFLEQAATLIDTTDDELVAQLPELIVLTDQVSLVVRALANS 126

Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV--M 452
           +      T    R                    +    I    ++ R+  R+ E      
Sbjct: 127 SLELYAQTADEQRAEVAGTLTQLALATAALIGVLALAIIYLNLLNARVYHREREKNQTMS 186

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
           ++ S++  + DG+ + + +G IL  + A   +FG+    +L       +  +     N  
Sbjct: 187 RMQSVMGTSLDGVVVCDADGKILEFSPAAEGIFGHSKAAVLDLNIASVIVPDHLLHANEA 246

Query: 513 -LTEILSLDLRQTLEK---ITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQ 566
            +  +      + + K         K+  +  + + I+         +   + DIS    
Sbjct: 247 GMERMRIGGDMRVIGKGRVRLEAKHKDGHIFPVELAIQNAKTDEGTIFISFLRDISHEVM 306

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
            + +L  A+  A      K++FL+ +SHEIRTPL  ++G   ++++       N     Y
Sbjct: 307 AEAELVTARDKALASEKMKTEFLSTMSHEIRTPLNGLLGNMNLLRDTEL----NENQDRY 362

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
             Y++ SG L+L  V+D+LDI++ ++GK+N   EPV++ E + + +      A +    +
Sbjct: 363 VGYMETSGRLLLSHVSDVLDITRYDAGKLNTRIEPVNISELLQDIVDNQASTAFQNETSL 422

Query: 687 RTS-FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ-IIIS-TTHTSNEEVILRVRD 743
                   +  +L+DL  ++ + +N++ NA+ FT  G   + I         E+++++ D
Sbjct: 423 VWGWCGVKMDWVLSDLDRLQHVMMNLIGNAVKFTRRGKVSVTIENVGEGDAAELLVKIID 482

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TG GM+   +++    F     +      GTGLGL +AK  V+A  G+  + S   +G+ 
Sbjct: 483 TGQGMSEDLIKRVFDDFVTGNTAYDRDVGGTGLGLSIAKRFVNALGGEIGVESIVGEGST 542

Query: 804 IEIIFPLYDTSHP 816
             +  P+++   P
Sbjct: 543 FWVRLPVHEAEAP 555



 Score = 38.5 bits (88), Expect = 4.4,   Method: Composition-based stats.
 Identities = 20/143 (13%), Positives = 39/143 (27%), Gaps = 13/143 (9%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI---DPNNHIGDLLKRQNTWYGK 146
           DA G + E S       G+    ++ + +  V    H+   +        +       GK
Sbjct: 203 DADGKILEFSPAAEGIFGHSKAAVLDLNIASVIVPDHLLHANEAGMERMRIGGDMRVIGK 262

Query: 147 TTLW----PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
             +       +G     P++LA     +       F  F  +     +    A       
Sbjct: 263 GRVRLEAKHKDGHIF--PVELAIQNAKTDEGTI--FISF--LRDISHEVMAEAELVTARD 316

Query: 203 KFSHLHEIKKGHSSVEKEKYDIF 225
           K     ++K    S    +    
Sbjct: 317 KALASEKMKTEFLSTMSHEIRTP 339


>gi|56480068|ref|NP_708113.2| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Shigella flexneri 2a str. 301]
 gi|56383619|gb|AAN43820.2| sensor for ctr capsule biosynthesis, probable histidine kinase
           acting on RcsB [Shigella flexneri 2a str. 301]
          Length = 949

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 100/496 (20%), Positives = 188/496 (37%), Gaps = 41/496 (8%)

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
             P+   +             + LT  +S    +                    + ++L 
Sbjct: 239 TLPMGVTILDENGHT-----LISLTGPESKIKGDPRWMQERSWFGY----TEGFRELVLK 289

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV---DTRINK 444
           ++      +      +    E    +              +       E         + 
Sbjct: 290 KNLPPSSLSIVYSVPVDKVLERIRMLILNAILLNVLAGAALFTLARMYERRIFIPAESDA 349

Query: 445 RKMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            ++E        I+ +   GI I+   +G+ + +N            +  ++        
Sbjct: 350 LRLEEHEQFNRKIVASAPVGICILRTADGVNILSNELAHTYLNMLTHEDRQR-------- 401

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                    LT+I+       ++      T     L +  +  +    +     + D+S 
Sbjct: 402 ---------LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSS 448

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + +  L    + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R 
Sbjct: 449 RVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR- 506

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
                 ++ S +L+L I++D+LD SKIES ++ +     S  E ++   +        K+
Sbjct: 507 --LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQ 564

Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           + +      ++P  +  D   ++Q+  N+LSNAI FT +G  I++       + + +RVR
Sbjct: 565 LGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG-CIVLHVR-ADGDYLSIRVR 622

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTGVG+   E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+
Sbjct: 623 DTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGS 682

Query: 803 LIEIIFPLYDTSHPHD 818
              +  PLY   +PH+
Sbjct: 683 QFTVRIPLYGAQYPHN 698


>gi|163848362|ref|YP_001636406.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222526284|ref|YP_002570755.1| PAS/PAC sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl]
 gi|163669651|gb|ABY36017.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222450163|gb|ACM54429.1| PAS/PAC sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl]
          Length = 957

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 122/750 (16%), Positives = 237/750 (31%), Gaps = 93/750 (12%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            W +   G     + ++           +  R  D    +  D       LL        
Sbjct: 26  VWQVLLDGARSVAAADMAVIYQLDPEADLLQRFVDRGTTVFPDYITVPNYLLHDLRLLRQ 85

Query: 146 KTTLWPIEGTN------------LYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193
                P + +                P ++  LP+  + R         +       +D 
Sbjct: 86  PIRFIPDQQSTPLALALTSAIWPDRPPREVVILPLIEQGR----LEAVCVCGWLSPVSDE 141

Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253
                 L          +   +S ++ + D            + + +++LT  Y H  D 
Sbjct: 142 E--ISALQFLVDDATYARAMLASTDRRQSD---------QGVISDAITNLTLLYTHTFDQ 190

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
           L           E++L +                               L+    P+L  
Sbjct: 191 LI----------EAALDQLVVIGEAAAGALYLYDDEAQSLRLQSVKVNALATAFAPTLRQ 240

Query: 314 YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
            +        + + +      + S   + Y                      L   L   
Sbjct: 241 LWQNDLGRHCQVLAES----LLESSNEVVYL---------VADPSSSHEIAPLHRFLCEH 287

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
                     + L        A   +L     N  +     ++                 
Sbjct: 288 -----AIDGILSLTIVAGGWQAGVVQLVPWPGNGFSERQWQWLRSLVRQIGVAIEHSRLF 342

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
                       ++  E+    +++E T+DGI +IN    ++  NR     FG    D+ 
Sbjct: 343 -----------ERLRAELDHAQAVVETTNDGIVLINARRRVVMVNRRACYFFGVAEHDLK 391

Query: 494 RKPFTVFL----EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
            +P+   L                   L         +       + + L          
Sbjct: 392 GRPYDDLLQVFNRVFAHPARLGLWLGQLLGSETDRANEEFQVVWPQVRRLQCFSAPVVDR 451

Query: 550 FSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
                   L   D++  ++ +                K++F++ VSHE+RTPL +  G  
Sbjct: 452 REQYLGRILIFRDVTREREVE--------------QMKNEFVSMVSHELRTPLASTQGAL 497

Query: 608 EVIKNQR------FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           +++               +    +       + N +L +VND+LDI+KIE G++ L   P
Sbjct: 498 QLLLGDSERGKSGLIRDMSSVERDLLQRALTNTNRLLRLVNDVLDIAKIERGQLQLQRHP 557

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           V+ +E    AI  +  +A ++++ I      N+P +  D   + Q+ +N+LSNAI F+P+
Sbjct: 558 VAPEEICRNAIDDLASFARQQQVTISLDVPPNLPLVDVDRDRIVQVLVNLLSNAIKFSPA 617

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           G Q+++S  H     V   VRD G G++  +  K  + F Q+  S+     G+GLGL ++
Sbjct: 618 GQQVVVSVAHE-QGMVRFSVRDWGPGISRADQLKLFQKFQQLDQSKSNVRGGSGLGLAIS 676

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
           + +V+ + G+ ++ S    G+      PL 
Sbjct: 677 RQLVELHGGRIWVDSDVGFGSTFSFTVPLA 706


>gi|329735733|gb|EGG72014.1| sensor protein kinase WalK [Staphylococcus epidermidis VCU028]
          Length = 610

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 76/387 (19%), Positives = 167/387 (43%), Gaps = 27/387 (6%)

Query: 426 ENMPQNGIEPEDVDTRINKRKM--EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           + + +  +   ++  R+ + +   E E  +L S++   SDGI   +R G +   N    K
Sbjct: 237 DEIGELALAFNNLSKRVQEAQANTESEKRRLDSVITHMSDGILATDRRGRVRIANDMALK 296

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           + G   ED++       L       +        S  L    E+  +        ++   
Sbjct: 297 MLGLAKEDVIGYYMLGVLNLENEFSLEEIQENSDSFLLDINEEEGIIAR------VNFST 350

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
           I+++  F + Y   +HD++E +Q + +              + +F+A VSHE+RTPLT++
Sbjct: 351 IVQETGFVTGYIAVLHDVTEQQQVERE--------------RREFVANVSHELRTPLTSM 396

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
             + E ++   +          + +        ++ +VNDLL +SK+++    +  E + 
Sbjct: 397 NSYIEALEEGAWQ--DKELAPSFLSVTREETERMIRLVNDLLQLSKMDNESDQITKEIID 454

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
            +  +++ I+  +     K                 D   + Q+  N+++NA+ ++    
Sbjct: 455 FNMFINKIIN--RHEMAAKDTTFVREIPQQTIFAEIDPDKMTQVFDNVITNAMKYSRGEK 512

Query: 724 QIIISTTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
            +       +    + +R++D G+G+   +++K    F ++  ++  +  GTGLGL ++K
Sbjct: 513 CVEFHVKQNALYNRMTIRIKDNGIGIPINKVDKIFDRFYRVDKARTRKMGGTGLGLAISK 572

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFP 809
            +V+A+ G+ +  S   +GT I I  P
Sbjct: 573 EIVEAHNGRIWANSVEGQGTSIFITLP 599


>gi|218887779|ref|YP_002437100.1| histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218758733|gb|ACL09632.1| histidine kinase [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 571

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 86/412 (20%), Positives = 165/412 (40%), Gaps = 24/412 (5%)

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
           E +L           +      +  +E E    R  +         L  IL +  D + +
Sbjct: 5   ETALNAPAQGTGMVFEDAGTAREAALEAEIARLRGERDAARSAERTLRDILTSIPDLLTV 64

Query: 468 INREGIILSTNRAVSKL-FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
            +R   ++ +N     + +     D   +       +   S     + E+     ++ +E
Sbjct: 65  HDRAEQVVFSNWQGDNVRWETQGGDQHGRSCFGCYFRGEKSCDACQIAEVFDTGRQKIIE 124

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM----HDISEWKQEKNKLSHAKKIAEKES 582
                   + +     I +  +  ++     +     D++E ++ + +L  AK+ AE   
Sbjct: 125 ----LYNPDSRTFR-SITVFPVRNAAGQVAMVAEYVRDVTETRRMERELRVAKEAAEAAD 179

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
             KS+FLA +SHEIRTP+  ++G  ++  +       +    EY      S   +L ++N
Sbjct: 180 KAKSEFLASMSHEIRTPMNGVLGMLDLALDTPL----DEEQREYLEAAQNSAESLLALIN 235

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADL 701
           D+LD SKIE+G + L  +   L + +S   ++    A EK +         +P  ++ D 
Sbjct: 236 DILDFSKIEAGMVELDSQVFRLRKRLSTLHTMFVHRAEEKGLGFAFLVPEGVPDGLVGDP 295

Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHT------SNEEVILRVRDTGVGMTNYELEK 755
             ++Q+ +N+L NA+ FT +G    +S           +  +   V D+G G+ +   E 
Sbjct: 296 MRLRQVLVNLLDNALKFTEAG---RVSLAVRTVQATPESMLLEFSVTDSGPGILDKHREH 352

Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
             + F Q   S   R +GTGLGL + K +     G   + S P +G+     
Sbjct: 353 IFERFVQADGSLSRRHKGTGLGLAICKRLALLMGGDIRVDSAPGQGSTFHFT 404


>gi|150003606|ref|YP_001298350.1| two-component system sensor histidine kinase [Bacteroides vulgatus
           ATCC 8482]
 gi|149932030|gb|ABR38728.1| two-component system sensor histidine kinase [Bacteroides vulgatus
           ATCC 8482]
          Length = 807

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 98/517 (18%), Positives = 193/517 (37%), Gaps = 38/517 (7%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
               +     +          P    +Y   G +   N   + +   +  +D+       
Sbjct: 302 RRSESEARLEKAYLQNIYKNLPAGIELYDKDGFMTDLNDKEMEIFGLRHKEDVIGLNLFD 361

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR------ENSLAMTFIPFEKA 421
             L    L D                I  S      + +         ++++        
Sbjct: 362 NPLLPQGLKDK---------LKAGAPIDMSFNYDFDRLDGYYSTSRTGTISLISKFAPLY 412

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR---EGI-ILST 477
           +     +    I  ++ +T     K++        I      G A  N    +G  + S 
Sbjct: 413 DALGNLINILLINIDNTETTNAYSKIQDFEEFFTLIGNYAKVGYAHFNALKCDGYAVNSW 472

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
            R V +  G P+ +I++         +   +M  +  ++L       L +      ++  
Sbjct: 473 YRNVGEKEGTPLNEIIK--VHSHFHPDDRRMMLRFFDQVLI-REASHLRRDVRILCEDGT 529

Query: 538 LLS--LRIIIKKLPFSSCY---SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
                + ++++               +DI+E K+ + KL  A+  AE+    KS FLA +
Sbjct: 530 YTWTRVNVMVRDFRPEDGIIDMVCVNYDITELKETERKLIAARDKAEELDRLKSAFLANM 589

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHEIRTPL AI+GFS ++              +Y   +  +  L+L +++D+LD+SK+ES
Sbjct: 590 SHEIRTPLNAIVGFSSLLTETE----DMKDRKQYMAIVQENTELLLQLISDILDLSKMES 645

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712
           G          ++   SE I  +++      + +          + AD   + Q+  N +
Sbjct: 646 GAFEFVKSDTDVNLLCSEIIRSLRMKVPA-GVELVFEECLPGCHVWADKNRLNQVISNFI 704

Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           +NA+ FT SG  I +     ++  +   VRDTG+G+   +++     F ++ +       
Sbjct: 705 NNALKFTFSGS-ITLGYYRQTDGYLRFYVRDTGMGIPKNKIKTVFDRFVKLNSFVH---- 759

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GTGLGL + K++V+   G   + S   +G+     +P
Sbjct: 760 GTGLGLSICKSLVEQMGGTIGVESEEGEGSCFWFTYP 796



 Score = 43.1 bits (100), Expect = 0.19,   Method: Composition-based stats.
 Identities = 24/232 (10%), Positives = 62/232 (26%), Gaps = 61/232 (26%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           K++    +L  ++     G   ++ +  +   +  V+ L G     I  K F   + +N 
Sbjct: 3   KIQENDARLQQLVSMARIGWWEVDFDEGVYYCSEFVADLLGIEGNKISAKDFANLICENY 62

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
              +                           +++ +   +  +            + E +
Sbjct: 63  RERILEEFRSF--------------------RMMEIYEQVFPIHSKYGMMWVSTKVGEKR 102

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
             K                                  ++G  + I  QR          +
Sbjct: 103 ITKEGHVR-----------------------------VMGMLQCISRQRMN-----MQEQ 128

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
             + ++   + +  I   LLD   + S  + L      +++ + E +   Q 
Sbjct: 129 TVDRLNSLLSRLNGISKSLLDF--LHSDDITLV-----INKILKEVLRQFQA 173



 Score = 41.9 bits (97), Expect = 0.47,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 28/56 (50%)

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
           ++ R ++ +  +E   L +I +    GI + +++G +   N    ++FG   ++ +
Sbjct: 299 MELRRSESEARLEKAYLQNIYKNLPAGIELYDKDGFMTDLNDKEMEIFGLRHKEDV 354


>gi|288940234|ref|YP_003442474.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
 gi|288895606|gb|ADC61442.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
          Length = 1062

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 114/670 (17%), Positives = 215/670 (32%), Gaps = 60/670 (8%)

Query: 186 VNRVDNDPRALG-KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244
           + R      ALG  RLD+ F  L +       + +  Y             +     +  
Sbjct: 99  IARKTKSADALGFHRLDQCFHLLTDPAWIDEWLAEGAYLCTPGWLAAWPRHLARLGLADR 158

Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
           +               L T  +    E       +L    +++  G              
Sbjct: 159 DLARTLFGESTRHLLLLDTGHDPRAAEHLAALAEHLALPARRERVGLGYLRLSLIQLAAQ 218

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH----------GNLFYANPSFLLLTKY 354
             +                +  +       V             G +     +    T+ 
Sbjct: 219 ASHRAEHRLNTSRLAAARQQLAETAMAMDLVGRLSVADGERGVIGQILEIFTALFAPTQC 278

Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
             +   E+       L      ++ A               AS     ++   E      
Sbjct: 279 FYLPCAELRANRPETLGDTPTPESFAEARDFALERGTIRATASGHGFLLRLQHETETLGV 338

Query: 415 FIPF------EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI--- 465
           F+                 +   G+    V    + + +     +  S+ E+ S+G    
Sbjct: 339 FLIDGLAMTRHLRKYQNLALQMAGLCAMAVQRAQSIQLLSQSETRYRSLFESMSEGFALH 398

Query: 466 -AIINREG-----IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL 519
             I++  G       L  NRA   L G    D++ +     +       +  Y    L  
Sbjct: 399 EIILDDRGHPIDYRFLDVNRAFETLTGLKRADLIGRRVREAIPGIEGHWIKRYGEVALHG 458

Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKK--- 576
            + +  +   +      +   +     ++     +++   D++E +Q +++L   ++   
Sbjct: 459 QVMRFEQFDNVL----GRHFQVHAYSPRV---GTFAVIFSDVTEQRQAEHELFEYREHLE 511

Query: 577 ---------------IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
                           AE+ +  KS FLA +SHEIRTP+ AIIG + ++  +    +  P
Sbjct: 512 TLVASRTAELALAKQEAERANQAKSLFLANMSHEIRTPMNAIIGLTHLLGRE----ISVP 567

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
              +    ID +   +L ++ND+LDISKIE+GK+ L     S    + +  +L+      
Sbjct: 568 AQRDRLLKIDGAAKHLLSVINDILDISKIEAGKLELQTSDFSPRVLLDQVSALIAEQVQS 627

Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----V 737
           K +  R         +  D   ++Q  LN L NA+ FT  G +I +      +      +
Sbjct: 628 KGLDYRVDAGPLPVVLHGDATRLRQALLNYLGNALKFTERG-RIQLQARLLEDGNEDALI 686

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
              V DTG+G+      +    F Q   S   R  GTGLGL + + + +   G   + S 
Sbjct: 687 SFEVIDTGIGIPEEMQGRLFTLFEQGDGSPIRRYGGTGLGLAITRRIAELMGGSAGVESV 746

Query: 798 PAKGTLIEII 807
           P +G+     
Sbjct: 747 PGQGSRFWFT 756


>gi|220925264|ref|YP_002500566.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans
           ORS 2060]
 gi|219949871|gb|ACL60263.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans
           ORS 2060]
          Length = 713

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 103/406 (25%), Positives = 170/406 (41%), Gaps = 15/406 (3%)

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
                 +  +           + +   E E          +     +  S++EA  + I 
Sbjct: 31  GTGIGLIAALLLVAIGWHARRLARWRREREIEHLHDRIWHLSESEERYRSLVEAQIEVIV 90

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
             + EG I   N   ++L G     +L             +V++    E      R    
Sbjct: 91  QRDAEGRITFANEGFARLAGSSPGALLGT-------AQQLTVLDSTPVESRPDGTRAADV 143

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM-HDISEWKQEKNKLSHAKKIAEKESSHK 585
            +        +  +               L+   +I+E  +    L  A+  AE  S  K
Sbjct: 144 AVAPPEGGATRWFAFVETAVVGRDGRPEVLSAGREITERIEAVRSLDEARSRAEAASVAK 203

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
           S FLA VSHE RTPL  I+G ++++ +    P        Y   +  SG  +L +++ +L
Sbjct: 204 SRFLATVSHEFRTPLNGILGMADLVLDTPLSP----EQETYIRAVKTSGEALLSLIDGIL 259

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSV 704
           D SKIE+G+++L  EP      V   + L+   A +K + I    A ++P +++ D   V
Sbjct: 260 DFSKIEAGRLDLAAEPFDPAGLVESVVELLAPRAQDKGLEIAADLAEDLPLQVVGDSDRV 319

Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764
           +QI LN+  NA+ FT SGG + + T   +  E+ L VRDTG G+    L    + F Q  
Sbjct: 320 RQILLNLAGNAVKFTESGG-VGV-TAERAGAEIALTVRDTGPGIPEERLPLLFEEFEQGD 377

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            S   R EGTGLGL + + +VD   G+  + S P +G+   ++ PL
Sbjct: 378 GSASRRHEGTGLGLAITRRLVDRMGGRIEVTSRPDEGSCFRVVLPL 423



 Score = 42.7 bits (99), Expect = 0.26,   Method: Composition-based stats.
 Identities = 40/383 (10%), Positives = 92/383 (24%), Gaps = 42/383 (10%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           DA G +   +E   +  G+    ++G        +L   P        +   T      +
Sbjct: 93  DAEGRITFANEGFARLAGSSPGALLGT--AQQLTVLDSTPVES-----RPDGTRAADVAV 145

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
            P EG             +  R+          ++   R   +     + LD+       
Sbjct: 146 APPEGGATR-WFAFVETAVVGRDGRPE------VLSAGREITERIEAVRSLDE---ARSR 195

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
            +    +  +    +  +   P +  +      L    + + +           +  S +
Sbjct: 196 AEAASVAKSRFLATVSHEFRTPLNGILGMADLVLDTPLSPEQETYIRAVKTSGEALLSLI 255

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
               DF  I   +              +   E L+ R         D+G  +  +  +  
Sbjct: 256 DGILDFSKIEAGRLDLAAEPFDPAGLVESVVELLAPR-------AQDKGLEIAADLAEDL 308

Query: 330 PIPFFVYSHGNLFYA--NPS--FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
           P+   V     +     N +   +  T+   V       G    L           + + 
Sbjct: 309 PLQV-VGDSDRVRQILLNLAGNAVKFTESGGVGVTAERAGAEIALTVRDTGPGIPEERLP 367

Query: 386 L-------------YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
           L              R + T +  +     +          +        +    +   G
Sbjct: 368 LLFEEFEQGDGSASRRHEGTGLGLAITRRLVDRMGGRIEVTSRPDEGSCFRVVLPLRALG 427

Query: 433 IEPEDVDTRINKRKMEIEVMQLC 455
            E     +   +R +        
Sbjct: 428 EERPRPPSLAGRRILVAAASAFE 450



 Score = 41.6 bits (96), Expect = 0.54,   Method: Composition-based stats.
 Identities = 15/165 (9%), Positives = 39/165 (23%), Gaps = 6/165 (3%)

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
           H  +    +  E        +  +     + G + +AN  F  L        +  A  L+
Sbjct: 65  HDRIWHLSESEERYRSLVEAQIEVIVQRDAEGRITFANEGFARLAGSSPGALLGTAQQLT 124

Query: 368 TLLDAPKLSDNNAIKPVMLYRSD---RTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
            L   P  S  +  +   +  +          +     +         ++          
Sbjct: 125 VLDSTPVESRPDGTRAADVAVAPPEGGATRWFAFVETAVVGRDGRPEVLSAGREITERIE 184

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE---ATSDGIA 466
                       +  +    R +     +  + L      +D + 
Sbjct: 185 AVRSLDEARSRAEAASVAKSRFLATVSHEFRTPLNGILGMADLVL 229



 Score = 41.2 bits (95), Expect = 0.76,   Method: Composition-based stats.
 Identities = 30/355 (8%), Positives = 77/355 (21%), Gaps = 15/355 (4%)

Query: 111 FKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYS 170
              +   + ++      D    I   L        +     + G +  V   L  L +  
Sbjct: 278 PAGLVESVVELLAPRAQDKGLEIAADLA-------EDLPLQVVGDSDRVRQIL--LNLAG 328

Query: 171 RNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP 230
              +F+   G G+            +             +                + + 
Sbjct: 329 NAVKFTESGGVGVTAERAGAEIALTVRDTGPGIPEERLPLLFEEFEQGDGSASRRHEGTG 388

Query: 231 PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG 290
                 +  V  +           +   + ++    +   E+    ++   +        
Sbjct: 389 LGLAITRRLVDRMGGRIEVTSRPDEGSCFRVVLPLRALGEERPRPPSLAGRRILVAAASA 448

Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLL 350
                 ++           + +            T    P PF           + +   
Sbjct: 449 FEGPFLRDRLARAGAEVVAAETEAAARETLRGVGTTPCGPAPFDAVLADRAL-GDEAVRR 507

Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
           +        I  A  L +  D        A              +  A L          
Sbjct: 508 IAGAAKRAGIPRAVVLLSPFDRRDFGSPGAAGFDRYLIKPVRARSLFAHLCEEARP--PG 565

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465
             +   P           P+  +  ++    +  RK    + +L +++    DG+
Sbjct: 566 GELRRAPGADRPAAARGRPRVLLAEDNPINALLARKA---LERLDTVVTWVPDGV 617


>gi|239616520|ref|YP_002939842.1| histidine kinase [Kosmotoga olearia TBF 19.5.1]
 gi|239505351|gb|ACR78838.1| histidine kinase [Kosmotoga olearia TBF 19.5.1]
          Length = 559

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 87/303 (28%), Positives = 149/303 (49%), Gaps = 4/303 (1%)

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572
           L +  +  +      I     K+   L++ I+I          +    ++  ++    + 
Sbjct: 250 LRDTDAFLVASVPNNIIYTRIKKIS-LTIFIVIAAAFLIVVLLIHFTILTNARKMIKTIE 308

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
                 ++    KS+FLA +SHE+RTPL +I GF  +I     G + N    +  + +  
Sbjct: 309 QDNIKIKELERLKSEFLATMSHELRTPLNSITGFVSMILQGISGEI-NEEQRKQLSMVHS 367

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
           S   +L+++ND+LDISKIE+G+M+   E  ++ + +SE +  V L  ++K + + T   +
Sbjct: 368 SSIHLLNLINDILDISKIEAGRMSFSKERFNIKDVISEVVQNVSLLISKKEVKLITEIPD 427

Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752
            IP I +D R V QI LN++SNAI FT  G ++ I        ++ + V DTG G+   +
Sbjct: 428 EIPEIYSDKRRVFQILLNLVSNAIKFTEKG-EVRIKCEV-DGNKLKISVSDTGKGIKEED 485

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
           +E   + F QI  S + R +G GLGL L+K +V    G+ ++ S   KG+      PL  
Sbjct: 486 METLFEAFRQISGSARRRYQGAGLGLYLSKKLVTLLGGEIWVESEYGKGSTFTFTLPLKS 545

Query: 813 TSH 815
              
Sbjct: 546 VEE 548


>gi|281418385|ref|ZP_06249405.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum
           JW20]
 gi|281409787|gb|EFB40045.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum
           JW20]
          Length = 932

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 98/494 (19%), Positives = 188/494 (38%), Gaps = 37/494 (7%)

Query: 341 LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400
           +  A+ S  L  + +          L    +   ++         L   D          
Sbjct: 80  IDLADASDYLTDEARKFAVTRKIVHLERYWEEINVTRTRDKVISRLQELDSPKEELELLA 139

Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
              +++                    +      E          +++  E   L +I E 
Sbjct: 140 KAKKYSDALVETERRSMRLVLEALGVDESDMVPEVASFKLSEGDQRLSREDKLLKAI-EI 198

Query: 461 TSDGIAIINRE-----------GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
             D     + +             I   N+ +                   +      + 
Sbjct: 199 MYDA--RYDSDKKNIMDPIAKFQRI--MNQRLESELEAARRGTAGATVLQIILAFVIILA 254

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEE-------KLLS---LRIIIKKLPFSSCYSLTMH 559
              L  IL   +   + +  +   K+        +L+    + + +    F+  Y    +
Sbjct: 255 IAVLIRILFTQVTYPI-RDYILKLKDFSFDDEEFRLVPKGTVELNMLAENFNELYRSFHN 313

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           ++   K+ +  +  A+  A+K +  KS+FLA +SHEIRTP+ +IIG+ + +       + 
Sbjct: 314 ELVRRKKAEETMKAARDEADKANRAKSEFLASMSHEIRTPINSIIGY-QYLLKN---SVL 369

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
           +P+  EY   I  +   +L I+N +LD SKIE+G+M L     ++D+ ++E + +V + A
Sbjct: 370 SPKQREYVENIGLAAKNLLAIINQILDFSKIEAGRMVLEEVDFNIDDVLNELMIIVGMEA 429

Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH----TSN 734
             K I +R     ++PR +  D+  +KQ+ +N++SN I FT  G  I I          N
Sbjct: 430 KRKGIELRIKVDEDVPRFLKGDITRLKQVVMNLVSNGIKFTHEG-YISIRVELVEKNEEN 488

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
             +   V DTG+G+++ + +   + F Q   S   +  GTGLGL + K +V+   G+  +
Sbjct: 489 ACIKFSVTDTGIGISDEQKKLLFQVFTQGDASTSRKYGGTGLGLAICKRLVELMKGEINV 548

Query: 795 FSTPAKGTLIEIIF 808
            S   KG+      
Sbjct: 549 ESEVGKGSTFSFSL 562


>gi|121997145|ref|YP_001001932.1| PAS/PAC sensor hybrid histidine kinase [Halorhodospira halophila
           SL1]
 gi|121588550|gb|ABM61130.1| PAS/PAC sensor hybrid histidine kinase [Halorhodospira halophila
           SL1]
          Length = 657

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 93/512 (18%), Positives = 185/512 (36%), Gaps = 31/512 (6%)

Query: 316 DEGENLTPETVDKCP--IPFFVYSHGNLFYANPSFLLLTKYKSVDD-IEIAGGLSTLLDA 372
           +       E ++  P  I       G+  Y NP+   +      D  +E     S     
Sbjct: 17  EIAPEELLEMLEGAPELIGVADLCCGHELYRNPAMRRVMGEPRPDIPLEQRIAQSH---P 73

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
                    + +   R D           T++       A        A++  E    + 
Sbjct: 74  EWAVRRILDEAIPAARRDGVWQG----ETTVRAVDGTEFAALQTIIVHADEHGEVQRCST 129

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG-IILSTNRAVSKLFGYPVED 491
           I  +  + +  +  +     +    LE        I+ +   ++    AV  + GY    
Sbjct: 130 IIRDVTEQKATEHALRKSEERYRRFLEDFLGVAYQIDPDDYRVVLLRGAVEAITGYDRAY 189

Query: 492 ILRKPFTV-FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR----IIIK 546
           +L   +    L               +     +  +       ++     +R    ++  
Sbjct: 190 LLDHGYCWGDLIHADDWERVAAEDAAIRRRGERVGDLRYRIRHRDGSTRWVRDIWQMVEL 249

Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
                  +   ++DI+E  + +           +    ++ FLA VSH++RTPL A++GF
Sbjct: 250 PANGRQVFQGALYDITERMELEQ-------ARAQADRDRTTFLAAVSHDLRTPLNAVVGF 302

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
           + ++++       +     Y      +   +L +V+ LL +S++E+G+M L   P  L  
Sbjct: 303 TGLLQDTEL----DAEQRRYVELCRTASQTLLGLVDTLLSLSRLEAGEMQLECAPFDLRA 358

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQI 725
            + + + L++  A EK + +       +P  +  D     Q+  N+ +NAI FT  G  +
Sbjct: 359 FLEDEVGLLEALAAEKGLSLSLHIDPAVPGWVEGDAVRFGQVLYNLANNAIKFTEQGSVV 418

Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
           I       +  + + VRDTG G++  + ++  + F Q       R EG+GLGL + K +V
Sbjct: 419 ITVEPADGDGLLRVAVRDTGPGISEADQKRIFRAFTQG-GDVFRRQEGSGLGLTICKELV 477

Query: 786 DANMGKFYIFSTPAKGTLIEII--FPLYDTSH 815
               G   + S P  G+  +     P  + S 
Sbjct: 478 RLMGGDLGLKSAPGAGSTFQFTARLPAVEPSA 509



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 51/166 (30%), Gaps = 11/166 (6%)

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVED 491
              +    +      EI   +L  +LE   + I + +   G  L  N A+ ++ G P  D
Sbjct: 2   ASRDVRGAKQGVGGHEIAPEELLEMLEGAPELIGVADLCCGHELYRNPAMRRVMGEPRPD 61

Query: 492 I-LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
           I L +       +     +      I +       +  T     +    +    I     
Sbjct: 62  IPLEQRIAQSHPEWAVRRILD--EAIPAARRDGVWQGETTVRAVDGTEFAALQTIIVHAD 119

Query: 551 SSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
                      + D++E K  ++ L   +K  E+      DFL   
Sbjct: 120 EHGEVQRCSTIIRDVTEQKATEHAL---RKSEERYRRFLEDFLGVA 162


>gi|229197751|ref|ZP_04324470.1| hypothetical protein bcere0001_32890 [Bacillus cereus m1293]
 gi|228585696|gb|EEK43795.1| hypothetical protein bcere0001_32890 [Bacillus cereus m1293]
          Length = 516

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 104/535 (19%), Positives = 202/535 (37%), Gaps = 42/535 (7%)

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTK 353
           +S +   + +                +     +  P     +   G + + NPS   +  
Sbjct: 13  SSTQKKRHPNISRRLRNHIQDRSLAEMYASLFEHNPDGIISLNLEGIIIHTNPSAERILG 72

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
           Y S + +E     S L       + +  + V+    +         + +I       L +
Sbjct: 73  YTSSE-LERKSITSIL-------EAHISEQVLQNIKNTEADNQQEYILSIYHKDGFLLDV 124

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
                    Q         ++P +   RI ++K++    +L +++ +    +   + EG 
Sbjct: 125 VTKLVPIFVQNRLTGVYAIMKPLEKSERI-EKKLKESEKRLRTLVNSMPAFVIFKDHEGR 183

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN----HYLTEILSLDLRQTLEKIT 529
            L  N      F +       K  +  ++ N            + E+     RQ L    
Sbjct: 184 WLEANDYALSCFNFHHVPYHGKKDSELIQYNEAYREAFLHCEEVDELAWQ-QRQILHGEE 242

Query: 530 LGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
               +++  L L I    L           +   DI+E K+ +  L  ++K+A       
Sbjct: 243 FIIHRDDFDLILSISKVPLYHPDGSRKGLIVMGRDITELKETEKLLRKSEKLAVV----- 297

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
               A ++HEIR PLT++ GF  ++      P  N     Y + +    + +  I +  +
Sbjct: 298 GQLTAGIAHEIRNPLTSLKGFLTLLL-----PEINEEQKWYIDVMLSEISQMESITSQFM 352

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
            +SK +     L  +  ++   + E ++ +   A    + I     + +  I  D   +K
Sbjct: 353 AMSKPQ----VLAIQTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYVYDIQCDGNQLK 408

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           Q+ +NIL NAI   P+GG I I T       +++R+ D G G+    + +  +PF     
Sbjct: 409 QVFINILKNAIEAMPNGGNIFIQTKPLEGNFILIRIIDEGCGIPEDRISRLGEPFY---- 464

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820
              ++ +GTGLGL +   +++ + GK +I S   KGT+++I  PL   S PH  I
Sbjct: 465 --SLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTVVDIHLPL---SSPHLAI 514


>gi|146291410|ref|YP_001181834.1| multi-sensor hybrid histidine kinase [Shewanella putrefaciens
           CN-32]
 gi|145563100|gb|ABP74035.1| multi-sensor hybrid histidine kinase [Shewanella putrefaciens
           CN-32]
          Length = 1196

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 104/506 (20%), Positives = 205/506 (40%), Gaps = 51/506 (10%)

Query: 322 TPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
               VD  P     ++       NP  + +              L+ +L +    +  A+
Sbjct: 467 IDNLVDGIPPAVLAFAATK---DNPQLVSI--------------LNKILASIPPDELQAL 509

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
           +      +               W        T I                     +   
Sbjct: 510 ENRWRRNAVPGKE---------TWRDYKYTIYTMIAATVMFILAAIYWTWLTRIHYIRRL 560

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP-VEDILRKPFTV- 499
             K++++ +++ +  ++++    I + + +  ++  N++   +F     EDIL K     
Sbjct: 561 DAKQEIQNQLLFMQEVVDSIPHPIYVRDIDQQLILCNQSYQHIFKATNKEDILHKSIEEG 620

Query: 500 -FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----Y 554
                    +   Y   I         ++       + K +++    +            
Sbjct: 621 SHRVIEAHELEKEYRKAIQENRAISR-DREIHI---DGKAVNIYHWFQPYKNEHGKICGI 676

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                D+S+  +   +L  AK++A+  S  K+ FLA +SHEIRTP+ AIIG  E+   + 
Sbjct: 677 VGGWIDVSDRVKLMAQLREAKELADSASKAKTQFLATMSHEIRTPMNAIIGLLELAIKR- 735

Query: 615 FGPLGNPRYIEY--ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
                +    ++        S   +L ++ D+LDI KIE+G++ L+   + L + +S  I
Sbjct: 736 ----SHENQFDFNSIRVAHDSAKGLLALIGDILDIVKIEAGELTLNPTKIDLKQTISSTI 791

Query: 673 SLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIS--- 728
            + +  A EK++ ++  F + +P+ +L D   +KQI  N++SNAI FT  G  + +S   
Sbjct: 792 QIFEGIALEKKLPLKLIFDHKLPQYVLLDPLRLKQILSNLISNAIKFTNQG-MVTVSAEQ 850

Query: 729 -TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
                    ++L+V DTG+G++  + +K  +PF Q+ +    +  GTGLGL +  ++ D 
Sbjct: 851 QLELNEQMYLLLKVSDTGIGISKDDQQKLFRPFAQVQHGADNK-GGTGLGLAICSSLCDM 909

Query: 788 NMGKFYIFSTPAKGTLIEIIFPLYDT 813
             G+  + S P +GT + +  PLY  
Sbjct: 910 MGGELRMISEPEQGTTLSMRLPLYPV 935


>gi|152995670|ref|YP_001340505.1| PAS/PAC sensor hybrid histidine kinase [Marinomonas sp. MWYL1]
 gi|150836594|gb|ABR70570.1| PAS/PAC sensor hybrid histidine kinase [Marinomonas sp. MWYL1]
          Length = 789

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 96/374 (25%), Positives = 167/374 (44%), Gaps = 47/374 (12%)

Query: 478 NRAVSKLFGYP-VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
           N A   + G     +I R    V         +     ++L      ++E+   G   + 
Sbjct: 48  NPASKAVMGLEKGAEIHRLNLRVQFGDEMAEQVYSTYRQVLQGGKPVSIEQ--AGMRGDG 105

Query: 537 KLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEK------------------------ 568
             +    +   +  S            DI++ K+ +                        
Sbjct: 106 SQIYFDTLFVPIFDSLGKPIFVCGVSRDITKIKEAETVALKANEKLLEYSTALETINQEL 165

Query: 569 --------NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
                    +L +AK+I E+    KS F+AR+SHEIRTP+ A+IG S +          N
Sbjct: 166 DRKVQERTKELENAKRIVEESLEAKSSFVARMSHEIRTPINAVIGLSHLALKTSL----N 221

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
               +Y N I  SG  +L +VND+LD SKIE+GKM +   P S    V  AI++  + A 
Sbjct: 222 HEQQDYINTILSSGENLLSLVNDVLDFSKIEAGKMGIEEVPFSPKSIVQHAINMNAIKAE 281

Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVI 738
           EK++ +    + ++P  +L D   ++Q+ +N+++NA+ FT  GG  + + T    ++ V+
Sbjct: 282 EKKLTVTVDISPSLPPMLLGDPLHIQQVLVNLVTNAVKFTERGGVCVRMYTDENDDKSVL 341

Query: 739 LR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           LR  V DTG+G++   L++  + F Q  +S   +  GTGLGL +++ +     G  ++ S
Sbjct: 342 LRCDVIDTGIGISKAYLDQLFQSFHQADDSVTRKFGGTGLGLTISRQLCSLMSGDIWVHS 401

Query: 797 TPAKGTLIEIIFPL 810
              +G+    + PL
Sbjct: 402 ELGQGSTFSFVLPL 415


>gi|170693150|ref|ZP_02884311.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia graminis
           C4D1M]
 gi|170142148|gb|EDT10315.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia graminis
           C4D1M]
          Length = 882

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 115/753 (15%), Positives = 239/753 (31%), Gaps = 42/753 (5%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTW 143
             W  DA G +   +      +GN       +          +    +     L    + 
Sbjct: 13  LVWTADARGIVTYTNIACRNYLGNPFAPNTTLHWDQFVLECDVKKVLDAWRSALTAGESA 72

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFG--IVHVNRVDNDPRALGKRLD 201
                L   +G   Y    L   PI+   R  +G  G    I    +         +RL 
Sbjct: 73  KVNARLQRFDG--KYRWHKLRLQPIFDDARVVTGACGIAMDIDDFVKAGEAYEIGERRLR 130

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
                            +               + + +V     +    +         L
Sbjct: 131 FALDAARVGAWEWDMGSRTARISAQLAHIYGLEQQQAEVPLQWLFDRIPESHRAWFAREL 190

Query: 262 LTSEESSLPEQEDF--HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS----LSAYF 315
                  +P + DF     +  +   +    T   +  E           +         
Sbjct: 191 TGRLHECVPFELDFPIELEDGRRLWLRTRGETDCGSGSEIERVFGVTFDITEQHDAQTER 250

Query: 316 DEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
           +  E      V+      ++    G     N        +   + +   G     L  P 
Sbjct: 251 ERSEQRYRALVEASSELTWIADAAGR----NHQLGNWHSFAPQEGLS-TGCEWLDLVHPD 305

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
             D+   K + + +++R      +    ++    +   M+       +          + 
Sbjct: 306 DQDSARDKWLGIVKAERPG----SMTFRLRRRDGSWRTMSARAAPLRDDDGTLREWFCMA 361

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN--RAVSKLFGYPVEDI 492
            +  D R     +E   ++L   + A    I  ++ +   +  +   A+ ++   P+  +
Sbjct: 362 TDVTDERAAAAALEERNLRLQVAMRAAKMIIGYLSLDSWTVCWDTVDAMPRVLAGPIA-L 420

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
                   +     + ++  +  +          +  +    +E  L  + ++++     
Sbjct: 421 SYDAALHRVHAEDRAAVDAAMRRVALTGEFDEPLEFRIAMNGQECWLQSQAVLQRDADGR 480

Query: 553 --CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
                 +  DI++ K  +  L        +    K +FLA ++HE+R PL  +     ++
Sbjct: 481 PWRVIASAVDITQRKTLELAL-------RETDRRKDEFLAMLAHELRNPLAPMRNAIALL 533

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
           + Q+   +     +       R  + +  +V+DLL++S+I  G++ L  EP+ L  AV  
Sbjct: 534 RRQKDAGMKPGELVGMLG---RQVDHMAQLVDDLLEVSRITHGRIVLRREPLLLGTAVYG 590

Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
           A+  V   A  +   +          + AD   + QI +N+L+NA  +T  GG + + T 
Sbjct: 591 ALETVSSMAASRGQHLTVRLPPTPVWLHADPLRLSQILVNVLNNACKYTDHGGSVCV-TA 649

Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
                   + + D G G++   L      F Q   +      G G+GL L K +V+ + G
Sbjct: 650 LADERFATVTIEDNGSGISPDLLPHIFDLFAQGERTLDRAHGGLGIGLSLVKKLVELHGG 709

Query: 791 KFYIFS-TPAKGTLIEIIFPLY---DTSHP-HD 818
              I S  P +G  + I  PL    +T+ P HD
Sbjct: 710 TIEIASPGPGRGATVSIRLPLSHAPETAAPSHD 742


>gi|153869309|ref|ZP_01998953.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
 gi|152074169|gb|EDN71053.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
          Length = 589

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 104/382 (27%), Positives = 179/382 (46%), Gaps = 22/382 (5%)

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE------QNTPS 507
           L  ++ A +DG+ + N +G +L  N A     G P +++         E       +   
Sbjct: 74  LSLVITAMADGLCVFNHQGQLLFLNPAAENYLGIPNQELQHTNVLDCFELHEKVNPDVRL 133

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEW 564
                L  +         +   L     ++ L +  I   +  +       L   DIS+ 
Sbjct: 134 ATPELLQRLNCG--HSFNDSNALLQCHNQQHLPVSCIFNPIIENQQVLGIVLLFQDISDI 191

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN---- 620
           K  + +L  AK+ AEK S  KS FL+ +SHE+RTP+ AI+G+SE++K      L      
Sbjct: 192 KDVEAELIAAKEAAEKASQAKSLFLSSMSHELRTPMNAILGYSELLKEDLGVALEEFELE 251

Query: 621 --PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
                 +Y   I  +G  +L+++N +LD+++IE+GK+ +  E V L E + E +S V   
Sbjct: 252 HVEDMQQYVGNILHAGWHLLELINKVLDLTRIEAGKLEVTIEKVELIELMKECVSFVSPQ 311

Query: 679 ANEKRILIRTSFANNIPRILA--DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
           A ++ I I    A  I  + A  D   +KQ+ +N+LSNA+ +    G + I+ T ++ E 
Sbjct: 312 AEKRAITIENKTAE-IHPVYALVDRGRLKQVFINLLSNAVKYNRDKGSVTINLTQSTLEY 370

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           V + V DTGVG+T  +  K   PF ++  S     EGTG+GL + K +++   G+  + S
Sbjct: 371 VRIEVADTGVGLTTEQKAKVFDPFTRL--SGLNLVEGTGIGLTITKRLLEIMDGRIGVES 428

Query: 797 TPAKGTLIEIIFPLYDTSHPHD 818
               G+   +  P+    +  +
Sbjct: 429 EIDIGSTFWVEVPVGKLDNAEE 450


>gi|283852522|ref|ZP_06369790.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283572130|gb|EFC20122.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 671

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 89/529 (16%), Positives = 186/529 (35%), Gaps = 31/529 (5%)

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKS 356
           +      +    P+L A      +       +  + +   +   + +          Y+ 
Sbjct: 7   RSGPASQAPAVGPALEALPTTFCSFQNLAHGQADLAYRTDAADRVEWMAREGARFLGYEG 66

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
            + +        L   P+           L  +  T          ++      + +   
Sbjct: 67  PEAVLGRPAGEALYRQPEDRRP-------LLAALETATGTVCLEEVLRRADGTPVTVRTR 119

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476
              + +                +    +  +   + ++ +I +    G+ +  R   I  
Sbjct: 120 GVVRRDAAGAPAGTEAHSLALSEETGARLTLARALREMETIFDNALVGMVLA-RGHRIEK 178

Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
            N   +++ G+P E+++ +   V              +    L              K+ 
Sbjct: 179 INARGAEVLGFPAEELIGRDAAVLFPAAAAYQAFAEASR-RDLICTGMHVGEYRLRRKDG 237

Query: 537 KLLSLRI---IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
           ++  +R     +           T  D++E K+ + +L  +K+ AE  S  K+ FLA +S
Sbjct: 238 RVAIVRSSARTVCPSNRDEGVIWTFDDVTEQKRLEEELRASKQAAEAASVAKTQFLANMS 297

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HE+RTPL  I+G +E++ +       +    E    I  S +L++ IV DLLD+S +E+G
Sbjct: 298 HELRTPLNGILGMTELLLDTA----EDAETRESLGVIRHSASLLMHIVGDLLDLSSVEAG 353

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNIL 712
           ++ +      L   +S  +      +  +       F   +P  ++ D    KQI +N++
Sbjct: 354 RLLVVEREFDLVAELSPLLRNFATQSLLRSFTFSYHFDPLLPAHLIGDPNRTKQILINLV 413

Query: 713 SNAIHFTPSGGQIIISTTHT-------------SNEEVILRVRDTGVGMTNYELEKAMKP 759
           SNA  +T  G  + +                      ++  V DTG+G+         +P
Sbjct: 414 SNAFKYTKKGS-VAVRIGLGDASGGGPAAAARPDRIRLLFSVADTGIGIDRQSQAAVFEP 472

Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           FG   N    +  G GLGL +A+ + +   G   + S P +G+   +  
Sbjct: 473 FGIGENYLTKKYSGAGLGLTIARRLANMLGGDIVLESEPGRGSTFSLTL 521



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/260 (5%), Positives = 49/260 (18%), Gaps = 17/260 (6%)

Query: 197 GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256
                   ++  +       + +E       + P   L      +   +    +  +   
Sbjct: 34  LAHGQADLAYRTDAADRVEWMAREGARFLGYEGPEAVLGRPAGEALYRQPEDRRPLLAAL 93

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY----LSHRNHPSLS 312
           E        E      E     +    T +      ++ +          L+        
Sbjct: 94  ETATGTVCLE------EVLRRADGTPVTVRTRGVVRRDAAGAPAGTEAHSLALSEETGAR 147

Query: 313 AYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                         D   +   +     +   N     +  + + + I            
Sbjct: 148 LTLARALREMETIFDNALVGMVLARGHRIEKINARGAEVLGFPAEELIGRDA------AV 201

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
              +           R D  C       + ++        +            +      
Sbjct: 202 LFPAAAAYQAFAEASRRDLICTGMHVGEYRLRRKDGRVAIVRSSARTVCPSNRDE-GVIW 260

Query: 433 IEPEDVDTRINKRKMEIEVM 452
              +  + +  + ++     
Sbjct: 261 TFDDVTEQKRLEEELRASKQ 280



 Score = 55.4 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/289 (7%), Positives = 64/289 (22%), Gaps = 19/289 (6%)

Query: 60  ESVSNTNYLDSENTFVFDPIPRTVRF-------------TWNIDAHGYLKEISEELPKTI 106
            S   +                   F              +  DA   ++ ++ E  + +
Sbjct: 3   PSPPRSGPASQAPAVGPALEALPTTFCSFQNLAHGQADLAYRTDAADRVEWMAREGARFL 62

Query: 107 GNY-AFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAA 165
           G      ++G    +       D    +  L     T   +  L   +GT   V +    
Sbjct: 63  GYEGPEAVLGRPAGEALYRQPEDRRPLLAALETATGTVCLEEVLRRADGTP--VTVRTRG 120

Query: 166 LPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF 225
           +         +G     +  ++        L + L +  +       G       + +  
Sbjct: 121 VVRRDAAGAPAGTEAHSLA-LSEETGARLTLARALREMETIFDNALVGMVLARGHRIEKI 179

Query: 226 SQQSPPPHLRMKNKVSS--LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY 283
           + +          ++        +          +        + +   E        + 
Sbjct: 180 NARGAEVLGFPAEELIGRDAAVLFPAAAAYQAFAEASRRDLICTGMHVGEYRLRRKDGRV 239

Query: 284 TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP 332
              +        S      +   +  +     +E    + +  +   + 
Sbjct: 240 AIVRSSARTVCPSNRDEGVIWTFDDVTEQKRLEEELRASKQAAEAASVA 288


>gi|171059183|ref|YP_001791532.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
 gi|170776628|gb|ACB34767.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
          Length = 957

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 99/421 (23%), Positives = 171/421 (40%), Gaps = 25/421 (5%)

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL---------CSI 457
            E    +     +       +  +     + +   ++ R  E+E              +I
Sbjct: 94  GEAQEQLMRALRKDRQALDGSQAELQRHRDHLQELVDARTAELEKAMQARGDAEAFVRAI 153

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
            +     ++  + +      N+      G P E ++               +   L  + 
Sbjct: 154 ADNLPARVSFWDVDLRCRFVNQRFCHDEGRPREALIGASLIDVFGAGRIGEVEARL-RMA 212

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLR-IIIKKLPFSSCYSLTMHDISEWKQEK-------N 569
                Q  E+I  G     + L +  I + +            DISE K+++        
Sbjct: 213 MQGQAQHFERIVPGLDGTTRTLWVHHIPVIRDGRLRGVVAMGTDISEIKRDEIRLRQLNT 272

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L+ A+  AE  +  KS FLA +SHEIRTP+ AIIG +++++     P G  +       
Sbjct: 273 ELAQARDHAEAANRAKSTFLANMSHEIRTPMNAIIGLTQLLRRTHRDPAGAEQ----LAK 328

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           +  + + +L I+ND+LD+SKIESGK+ L    + LDE +S  +SLV   A+EK + +   
Sbjct: 329 VADAADHLLQIINDVLDLSKIESGKVELESIDIDLDELLSRTLSLVSSRAHEKGLELVLD 388

Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EVILRVRDTGV 746
             +    +  D   + Q  LN+L+NAI FT  G  I+             V   V+DTG+
Sbjct: 389 TDHLPRTLRGDPTRLSQALLNLLTNAIKFTDHGSVILRGQKLQDGADGVHVRFSVQDTGI 448

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+   ++E     F Q  +S   R  GTGLGL + + +     G+    S   +G+    
Sbjct: 449 GVEADQVEALFLAFEQGDSSTTRRHGGTGLGLAITRHLAQLMGGESGADSVAGQGSTFWF 508

Query: 807 I 807
            
Sbjct: 509 T 509



 Score = 46.9 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 44/422 (10%), Positives = 110/422 (26%), Gaps = 28/422 (6%)

Query: 39  SKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFD-PIPRTVRFTWNIDAHGYLKE 97
           S+ E   H    Q     +  E             FV         R ++  D     + 
Sbjct: 114 SQAELQRHRDHLQELVDARTAELEKAMQARGDAEAFVRAIADNLPARVSF-WDVDLRCRF 172

Query: 98  ISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNL 157
           +++      G     +IG  L DV     I        +  +    + +  +  ++GT  
Sbjct: 173 VNQRFCHDEGRPREALIGASLIDVFGAGRIGEVEARLRMAMQGQAQHFERIVPGLDGTTR 232

Query: 158 YVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSV 217
            + +    +P+  R+    G     +V +    ++ +    RL +  + L + +    + 
Sbjct: 233 TLWV--HHIPV-IRDGRLRG-----VVAMGTDISEIKRDEIRLRQLNTELAQARDHAEAA 284

Query: 218 EKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL-------P 270
            + K    +  S      M   +           D    E+   +      L        
Sbjct: 285 NRAKSTFLANMSHEIRTPMNAIIGLTQLLRRTHRDPAGAEQLAKVADAADHLLQIINDVL 344

Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330
           +     +  +   +       L + +       +H     L    D           +  
Sbjct: 345 DLSKIESGKVELESIDIDLDELLSRTLSLVSSRAHEKGLELVLDTDHLPRTLRGDPTRLS 404

Query: 331 IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390
                     + + +   ++L   K  D  +      ++ D     + + ++ + L    
Sbjct: 405 QALLNLLTNAIKFTDHGSVILRGQKLQDGADGVHVRFSVQDTGIGVEADQVEALFLAFEQ 464

Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFE----KANQFPENMPQNGIEPEDVDTRINKRK 446
                      T + +    L +                +++   G          + R 
Sbjct: 465 G-------DSSTTRRHGGTGLGLAITRHLAQLMGGESGADSVAGQGSTFWFTARLAHART 517

Query: 447 ME 448
           ++
Sbjct: 518 LQ 519


>gi|218779891|ref|YP_002431209.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218761275|gb|ACL03741.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 865

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 86/565 (15%), Positives = 203/565 (35%), Gaps = 46/565 (8%)

Query: 277 TINLNQYTKKQYFGTLQNNSKESFEYL--SHRNHPSLSAYFDEGENLTPETVDKCPIPFF 334
              L++Y  +           E   +L  S      +     + ++L            +
Sbjct: 182 ASELSRYWYQTEMEEQHRKLLEEKVFLKNSISLRIQVEEALRKSQSLYELLTRNMKDVIW 241

Query: 335 VYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393
                  L Y +P   LL  +   +++      S ++     +  + +  +   +   + 
Sbjct: 242 TTDLDFRLTYVSPGIRLLQGFTP-EELADKSIESMMIADSLNNAVSVLTRLAERK---ST 297

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
            + +     +  N  +    T       +         G   +  D +  +  +     +
Sbjct: 298 QSVALETEMLHKNGGSVWVETVASLYLDD-NGNPAGFIGSSRDISDRKGAEAALRKSEER 356

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
               +E    G+  ++  G     N+ V ++ GY   D+L + F   +       +   +
Sbjct: 357 FREFVEKAPVGMFTVDLHGKFTYMNKKVLQMTGYRSADMLGRQFYQIVHPEDLPKIIRAM 416

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--------CYSLTMHDISEWK 565
            +  S  +R T            K++ + +  + L   S         +   + D++E K
Sbjct: 417 EDAAS-GVRTTPYLQARIRDSVGKIMWIVVTSEMLMGYSQDDKRTPIGFQCFVEDVTERK 475

Query: 566 QEKNKLSHAKKIAEKE--SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + +    ++   +             ++H+    L+ IIG++E++++   G   +   
Sbjct: 476 FAEMEKLRLERQLRQSHKMEAIGTLAGGIAHDFNNILSPIIGYTEMLRDTLKG---DKAA 532

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
           +   + + ++     ++V+ +L  S+    K     + V+L   VS+ ++L++       
Sbjct: 533 VRDLSEVLKAARRAKELVSQILTFSR----KSEEKPQLVALAPIVSDVLNLIRATLPA-T 587

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS-GGQIIIST------------- 729
           I I      +   ++AD   + Q+ +N+ +NA       GG + ++              
Sbjct: 588 IQIHKDIDLSCGSVMADSTQMHQVVMNLCTNAYQVMRQTGGVLEVTLKETQLKEKDLSPA 647

Query: 730 -THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
            +        L V DTG GM     E+  +P+          GEGTG+GL +A A+V  +
Sbjct: 648 SSIQPGRYAWLSVSDTGEGMPPEIQERIFEPYFTTKP----IGEGTGMGLAVAHAIVTKH 703

Query: 789 MGKFYIFSTPAKGTLIEIIFPLYDT 813
            G+  + S+P +GT+ ++  P+ ++
Sbjct: 704 RGEIRVQSSPGRGTVFDVFIPVMES 728



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 33/327 (10%), Positives = 80/327 (24%), Gaps = 24/327 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ---NT 142
            W  D    L  +S  +    G    ++    +  +     ++    +   L  +    +
Sbjct: 240 IWTTDLDFRLTYVSPGIRLLQGFTPEELADKSIESMMIADSLNNAVSVLTRLAERKSTQS 299

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
              +T +    G +  V ++  A      N   +GF   G            A  ++ ++
Sbjct: 300 VALETEMLHKNGGS--VWVETVASLYLDDNGNPAGF--IGSSRDISDRKGAEAALRKSEE 355

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDD-VLKTEK 258
           +F    E                            R  + +        H +D       
Sbjct: 356 RFREFVEKAPVGMFTVDLHGKFTYMNKKVLQMTGYRSADMLGRQFYQIVHPEDLPKIIRA 415

Query: 259 YPLLTSEESSLPEQE-DFHTINLNQYTKKQYFGTL----QNNSKESFEYLSHRNHPSLSA 313
                S   + P  +                   L    Q++ +    +       +   
Sbjct: 416 MEDAASGVRTTPYLQARIRDSVGKIMWIVVTSEMLMGYSQDDKRTPIGFQCFVEDVTERK 475

Query: 314 YFDEGENLTPETVDKC--PIPFFVYSHGNLFYANPSFLLLTKYKSV--DDIEI----AGG 365
           + +  +      + +          + G     N     +  Y  +  D ++        
Sbjct: 476 FAEMEKLRLERQLRQSHKMEAIGTLAGGIAHDFNNILSPIIGYTEMLRDTLKGDKAAVRD 535

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRT 392
           LS +L A + +     + +   R    
Sbjct: 536 LSEVLKAARRAKELVSQILTFSRKSEE 562



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 71/214 (33%), Gaps = 15/214 (7%)

Query: 56  DQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIG 115
           D +    +      SE  F        V   + +D HG    +++++ +  G  +  M+G
Sbjct: 339 DISDRKGAEAALRKSEERFREFVEKAPVG-MFTVDLHGKFTYMNKKVLQMTGYRSADMLG 397

Query: 116 MRLCDVSDILHIDPNNHIGDLLKR-----QNTWYGKTTLWPIEGTNLYVPIDLAALPIY- 169
            +   +     +     I   ++      + T Y +  +    G  +++ +    L  Y 
Sbjct: 398 RQFYQIVHPEDL---PKIIRAMEDAASGVRTTPYLQARIRDSVGKIMWIVVTSEMLMGYS 454

Query: 170 -SRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228
               R   GF+ F  V              RL+++    H+++   +      +D  +  
Sbjct: 455 QDDKRTPIGFQCF--VEDVTERKFAEMEKLRLERQLRQSHKMEAIGTLAGGIAHDFNNIL 512

Query: 229 SPPPHL--RMKNKVSSLTEYYAHKDDVLKTEKYP 260
           SP       +++ +           +VLK  +  
Sbjct: 513 SPIIGYTEMLRDTLKGDKAAVRDLSEVLKAARRA 546


>gi|45358866|ref|NP_988423.1| sensory transduction histidine kinase [Methanococcus maripaludis
           S2]
 gi|45047732|emb|CAF30859.1| Sensory transduction histidine kinase [Methanococcus maripaludis
           S2]
          Length = 639

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 73/248 (29%), Positives = 131/248 (52%), Gaps = 4/248 (1%)

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            K+   +L  +    ++    KS+ +A VSHE+RTPLT+I G+ E++ +   G + N   
Sbjct: 392 LKKHAEELKISYNELKELDKLKSELIAVVSHELRTPLTSIKGYVELVLDGTMGAI-NDSQ 450

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            +     D +   +  ++  +LD+SKIE G++ ++ E V+L   V + I  ++  A EK 
Sbjct: 451 KKCLQVADDNIVRLRRLIESMLDLSKIERGELEMYREKVNLRSIVCDVIEYLKPLATEKN 510

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
           I +     +    I AD   + Q+  N++ NAI F+P+   I++S        + L+V D
Sbjct: 511 IKLNKEVED--IAIEADKDRITQVLTNLIENAIKFSPANESILVSGVLEDE-HIHLKVTD 567

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
            G G+   ++EK    F Q+ +S + +  G+GLGL + K++V+A+ G  ++ S   KG+ 
Sbjct: 568 RGAGIPKKDMEKIFNRFYQVDSSTKRKKGGSGLGLAVCKSIVEAHKGSIWVESELGKGST 627

Query: 804 IEIIFPLY 811
             II P+ 
Sbjct: 628 FHIILPIS 635


>gi|89052756|ref|YP_508207.1| histidine kinase [Jannaschia sp. CCS1]
 gi|88862305|gb|ABD53182.1| histidine kinase [Jannaschia sp. CCS1]
          Length = 716

 Score =  309 bits (791), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 96/442 (21%), Positives = 179/442 (40%), Gaps = 16/442 (3%)

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
           +   +           +A  +        +    A          +    + +   +  +
Sbjct: 8   DRMAQERRARLQAEQLLALRSEELYSANRKLAEHATALSTQVIEQREENELLKGKTQKTE 67

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
           V+  +   +  +   +L   L AT DG AI +R+  +++ N A   +F    +      +
Sbjct: 68  VELEVVTERALMAQRRLWDALTATEDGFAIFDRDWRLVAANPAFFLIFDGISDVTEGATY 127

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF----SSC 553
              L   T   +     +     + + + +          +        +L         
Sbjct: 128 EAILRVATEEGIVDLQGQNADDWVEEMVARWEKVPIPNVDVKLWNGAYIRLNDKQTPQGD 187

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
           +     DI+   + + +LS A+  AE  +  KS FLA +SHEIRTP+  ++  +E++++ 
Sbjct: 188 FVSLSVDITPNIRRERELSEARDAAEAANRAKSHFLANMSHEIRTPMNGVVSMAELLRDT 247

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
                 +     YA+ I  SG  +L I+ND+LD SKIE+GK+ LH E   L+  V E   
Sbjct: 248 AL----DEEQQMYADTIRSSGEALLVIINDILDFSKIEAGKLELHEETFDLNAMVGEIFR 303

Query: 674 LVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIST--- 729
           L+Q     K + +R  +   +P +L  D   ++QI  N++ NA+ FT  G  + +     
Sbjct: 304 LIQPGIASKDLELRLDYDIFLPPLLIGDRGRMRQILTNLIGNAVKFTEKG-HVTVRVLSV 362

Query: 730 ---THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
                     + + V D+GVG+   + E     F Q+ +    R +GTGLGL + K ++ 
Sbjct: 363 PPMDQPDALGISIVVEDSGVGIAPDQQEHVFGEFNQVEDEANRRHDGTGLGLAITKRLIS 422

Query: 787 ANMGKFYIFSTPAKGTLIEIIF 808
              GK ++ S   +G+      
Sbjct: 423 LMGGKMWLESEVGRGSAFGFTI 444


>gi|329955377|ref|ZP_08296285.1| PAS domain S-box protein [Bacteroides clarus YIT 12056]
 gi|328525780|gb|EGF52804.1| PAS domain S-box protein [Bacteroides clarus YIT 12056]
          Length = 624

 Score =  309 bits (791), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 102/516 (19%), Positives = 194/516 (37%), Gaps = 40/516 (7%)

Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
            S    + E L        P+   +Y+  G L   N   L +   +  +D+         
Sbjct: 125 ASQVLQQRERLLHNIYKNLPVGIELYNIDGVLIDLNDKELEMFHLRRKEDLLGVNIFDNP 184

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI-----QWNRENSLAMTFIPFEKANQF 424
           +   ++ +        L + +            +        +  ++ +        ++ 
Sbjct: 185 VFPQEMKEK-------LRKYENADFTFRYDFAQVGSYYDPQTKTGTIDLVTKVTTLYDEK 237

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA---IINREGIILSTNRAV 481
                   I  +  +T +   K++        I      G A   ++ R+G       + 
Sbjct: 238 HVPTNYLLINADKTETTVAYNKIQEFESFFELIGNYAKVGYAHYNLLTRQG---YAQHSW 294

Query: 482 SKLFGYPVEDILRKPF--TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
               G   +  L +       +  +    M  +L   L         K      ++    
Sbjct: 295 YINVGEQEDTPLSEIIGVYNHIHPDDRHDMLRFLDNALK-GTENKFNKEIRILRQDGNCS 353

Query: 540 SLRIIIK-----KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
              + +                  +DI+  K  +  L  AK+ AE+    KS FLA +SH
Sbjct: 354 WTHVNLIVKVYAPEQNCIELICINYDITRLKDTEAMLILAKEKAEESDRLKSAFLANMSH 413

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           EIRTPL AIIGFS ++               Y   I+ +  L+L+I+ND+LD+SKIE+G 
Sbjct: 414 EIRTPLNAIIGFSGLL----PYIEDAEERDRYIALINHNNELLLNIINDVLDLSKIEAGH 469

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714
           + L    ++L + + E+ +  Q    E  + ++T +      I  D   +KQ+  N++SN
Sbjct: 470 IELSPVWLNLSDLIDESCTECQRNVPE-GVTLKTRYPAIPRLIEQDPMRIKQVLSNLVSN 528

Query: 715 AIHFTPSGGQIIISTTHTSNE-EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
           A+  T  G    +  ++ + + E  + V DTG G+   +L    + F +  +      +G
Sbjct: 529 ALKNTTQG---YVEISYETGQSEARISVSDTGCGIPQEKLGVIFERFEKTDSF----VQG 581

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            GLGL + K++V+   G+  + S   +G+   + FP
Sbjct: 582 AGLGLSICKSIVEHMNGRIEVISAVGEGSTFTVTFP 617


>gi|221124430|ref|XP_002164506.1| PREDICTED: similar to sensory histidine protein kinase [Hydra
           magnipapillata]
          Length = 566

 Score =  309 bits (791), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 90/288 (31%), Positives = 154/288 (53%), Gaps = 12/288 (4%)

Query: 537 KLLSLRIIIKKLPFSSCYSL---TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
           ++  +R   +    ++ + +    + D+++ +    +L  AK  AE  +  KSDFLA +S
Sbjct: 8   EIFWVRGESQPQHKANGHIVWNGFLTDVTQARHISEELQKAKDAAEAANHAKSDFLANMS 67

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HEIRTP+  +IG +E++ +       +    EY N +  S   +L ++ND+LD SKIE+G
Sbjct: 68  HEIRTPMNGVIGMTELLLDTTL----DAEQQEYLNIVKSSSEALLRVINDILDFSKIEAG 123

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNIL 712
           KM++   P +L+  V++ +  V L A++K + +    A ++PR ++ D   ++Q+ +NIL
Sbjct: 124 KMDIESIPFNLERTVADTLKTVVLRAHDKGLEVVWDVAPDVPRALVGDPGRLRQVLVNIL 183

Query: 713 SNAIHFTPSGGQI-IISTTHTSNEE--VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
            NAI FT  G  +  I     SN +  + L V DTG+G+   +L      F Q  +S   
Sbjct: 184 GNAIKFTERGEVVLRIRQEVASNGKPLLHLAVSDTGIGIPANKLGSIFDAFSQEDSSTTR 243

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY-DTSHP 816
           +  GTGLGL +   +V+   G  ++ STP +G++      L  DTS P
Sbjct: 244 KYGGTGLGLTICARLVEGMGGTIWVESTPGQGSVFHFTVALVKDTSAP 291


>gi|317046690|ref|YP_004114338.1| multi-sensor hybrid histidine kinase [Pantoea sp. At-9b]
 gi|316948307|gb|ADU67782.1| multi-sensor hybrid histidine kinase [Pantoea sp. At-9b]
          Length = 777

 Score =  309 bits (791), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 90/436 (20%), Positives = 183/436 (41%), Gaps = 17/436 (3%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L             L+         L        KA Q  E +  + +  E
Sbjct: 81  EESRQRLSRLVDKLEEMRTRDLELNQQMKETITQLNQEIADRIKAEQAREQV-MDKLREE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
                  + ++E +   L S L+A+ D +   N +      NRA+  L G   + ++   
Sbjct: 140 MTRREQAQIELEQQSSFLRSFLDASPDLVFYRNIDKQFSGCNRAMELLTGLSEKQLIGLT 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCY 554
                +++  + +     ++   ++  T E+        +    +R +    ++   S  
Sbjct: 200 PRDIYDEDAATKVLETDEKVFRHNVSLTYEQWLQYPDGRKACFEIRKVPYYDRVGKRSGL 259

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+ ++ L +        S  K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 260 MGFGRDITERKRYQDALEN-------ASREKTTFISTISHELRTPLNGIVGLSRILLDTD 312

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                N   ++Y   I  S   + +I ND++++ KIE  K+ L  +P+     +++  +L
Sbjct: 313 L----NQEQLKYLKTIHVSAITLGNIFNDVIEVDKIERRKVQLDNQPLDFTGFLADLENL 368

Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
             L A  K +    S    +P  I AD   ++QI  N++ NA+ FT  G +I++   +  
Sbjct: 369 SGLLAQPKGLKFVMSPELPLPHKISADGTRLRQILWNLIGNAVKFTQQG-EIVVRVAYHQ 427

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMGKF 792
           +E +   V D+G+G+   E +K    + Q+ +    +   GTG+GL +++ +  A  G  
Sbjct: 428 DETLHFEVEDSGMGIPQEEQDKIFAMYYQVKDQHGGKPATGTGIGLAVSRRLAQAMGGDI 487

Query: 793 YIFSTPAKGTLIEIIF 808
            + S   +G+   +  
Sbjct: 488 TVRSVQGQGSCFTVEI 503



 Score = 48.1 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 26/254 (10%), Positives = 60/254 (23%), Gaps = 8/254 (3%)

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
           + +GH         +F      P       V       + +      +K   + + +  L
Sbjct: 45  VLRGHVESIDVVRSVFFGLLITPWAVYFLSVVVDQLEESRQRLSRLVDKLEEMRTRDLEL 104

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
            +Q       LNQ    +                            ++  +     +D  
Sbjct: 105 NQQMKETITQLNQEIADRIKAEQAREQVMDKLREEMTRREQAQIELEQQSSFLRSFLDAS 164

Query: 330 PIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388
           P   F  +        N +  LLT       I        L       ++ A K +    
Sbjct: 165 PDLVFYRNIDKQFSGCNRAMELLTGLSEKQLIG-------LTPRDIYDEDAATKVLETDE 217

Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
                  +      +Q+                ++  +     G   +  + +  +  +E
Sbjct: 218 KVFRHNVSLTYEQWLQYPDGRKACFEIRKVPYYDRVGKRSGLMGFGRDITERKRYQDALE 277

Query: 449 IEVMQLCSILEATS 462
               +  + +   S
Sbjct: 278 NASREKTTFISTIS 291



 Score = 40.8 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 24/154 (15%), Positives = 49/154 (31%), Gaps = 9/154 (5%)

Query: 67  YLDSENTF--VFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI 124
            L+ +++F   F      + F  NID        +  +    G    ++IG+   D+ D 
Sbjct: 149 ELEQQSSFLRSFLDASPDLVFYRNIDKQ--FSGCNRAMELLTGLSEKQLIGLTPRDIYDE 206

Query: 125 LHIDPNNHIGDLLKRQN-TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI 183
                     + + R N +   +  L   +G       ++  +P Y R  + SG  GFG 
Sbjct: 207 DAATKVLETDEKVFRHNVSLTYEQWLQYPDGRKACF--EIRKVPYYDRVGKRSGLMGFG- 263

Query: 184 VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSV 217
                     +   +   ++ +            
Sbjct: 264 -RDITERKRYQDALENASREKTTFISTISHELRT 296


>gi|39996730|ref|NP_952681.1| sensory box histidine kinase [Geobacter sulfurreducens PCA]
 gi|39983611|gb|AAR35004.1| sensory box histidine kinase [Geobacter sulfurreducens PCA]
          Length = 710

 Score =  309 bits (791), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 83/394 (21%), Positives = 171/394 (43%), Gaps = 38/394 (9%)

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
             S+LE  SD I +++   I+   N+   + FG+  E+++  P +  L       +    
Sbjct: 302 YKSLLEDASDAIVVVDENEIVKMVNKMAEEFFGHSSEEVVGLPLSRMLVLVKTHNIPIVY 361

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLL--SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571
                +   + + +    S  E + +   +      +         + D++  ++    L
Sbjct: 362 NFFQEVGKGRHVAEEIRFSRVEGEQVVGLIHANTVTIGSERLIQAIIRDVTREREILFNL 421

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
             +     + +  K  FL   SHE++TPLT I+G++E+I +   G +     I+    I 
Sbjct: 422 EKSATDLARLNKMKDSFLGIASHELKTPLTVIMGYAELILSDMSGKVDR-NVIDMVQNIS 480

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
            +   + +IV D++DIS I+  ++ L  + V ++  V ++++ ++ + + ++  +     
Sbjct: 481 NAAARLDNIVKDMVDISMIDERRLRLKLDDVDVNRLVEDSMNELRFFVSMRKQKLVGELD 540

Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT--------------------- 730
             +PRI  D   + Q+  N++ NAI FTP GG+I +ST                      
Sbjct: 541 ETVPRIKGDPVRLMQLMSNVIGNAIKFTPDGGRITVSTRTKYLLRSKQAPIPELVKPVVN 600

Query: 731 --HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE-------GTGLGLPLA 781
                +  V + + DTG+G+   +  +    F ++ N ++           G GLGL +A
Sbjct: 601 IGKEQHLYVEITITDTGIGIDMDDQLRIFDKFYEVGNIEEHSSGKVAFKARGAGLGLSIA 660

Query: 782 KAMVDANMGKFYIFS---TPAK--GTLIEIIFPL 810
           K +V+ + G+ ++ S    P +  G+   I+ PL
Sbjct: 661 KGIVEMHGGEIWVESPGYNPEQFPGSTFHIVLPL 694


>gi|120611638|ref|YP_971316.1| PAS/PAC sensor hybrid histidine kinase [Acidovorax citrulli
           AAC00-1]
 gi|120590102|gb|ABM33542.1| PAS/PAC sensor hybrid histidine kinase [Acidovorax citrulli
           AAC00-1]
          Length = 663

 Score =  309 bits (791), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 102/487 (20%), Positives = 183/487 (37%), Gaps = 18/487 (3%)

Query: 332 PFFVYSHGNLFYA--NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389
           P   YS   +  A    +    +  +++           L       D  A+   +  R 
Sbjct: 25  PVTRYSTARVVRAAGFQTMEAESGAQALQMAGEGISAVVLDVHLPDIDGFAVCRALRTRE 84

Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449
           D   +             +    +            E     G     +  R  +  +  
Sbjct: 85  DTAQLPVMHLSAAHVHAEDRVTGLNAGADAYLTHPVEPAVLVGTLQALIRARTAEDSLRR 144

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
              +  +I      GI ++ R+G     N A++++ G   +++L +  + F        +
Sbjct: 145 SDRRFRAIYSQALSGIGLLERDGRFTDVNPAMARVLGRTRQEVLGRAISDFAPPGWVDFV 204

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN 569
                + +      T +          + + L   I              DISE  +  +
Sbjct: 205 KD---KTVDTGQSATWQGEFPLMRPSGQWVYLEWSISAHVEPGMRMALAADISERVELDS 261

Query: 570 KLSHAKKIAEKE-------SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +     +  +         S  K DF+A +SHE+RTPL AI G+  ++K +     G P 
Sbjct: 262 RRQEVLEREQAARATAERLSRTKDDFIAVLSHELRTPLNAIAGWVHILKRRG----GTPE 317

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
            I+  + I R+      I++D+LD+S+I SGK++L  E     E V  AI  +Q    EK
Sbjct: 318 LIKGLDSIHRNVKAQARIISDILDVSRINSGKLHLEREWTQPIEVVRSAIDALQASIAEK 377

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
            + I      +I     D    +QI  N+L+NAI F+   G+I +S +   ++ + L V+
Sbjct: 378 HLEIVLRAGEDIGPAWLDPTRFQQIFWNLLTNAIKFSNDSGRIDVSLS-RDDDALTLTVQ 436

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKG 801
           D G G++   +E     F Q  +    R  G GLGL + K + + + G    +S    +G
Sbjct: 437 DFGRGISPEFIEHLFDRFTQSDSPDNRRHGGLGLGLSIVKHLAELHGGGAEAYSAGTGEG 496

Query: 802 TLIEIIF 808
           T I +  
Sbjct: 497 TTITVTL 503



 Score = 57.7 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 29/275 (10%), Positives = 87/275 (31%), Gaps = 12/275 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ++  G   +++  + + +G    +++G  + D +    +D          +  TW G+  
Sbjct: 163 LERDGRFTDVNPAMARVLGRTRQEVLGRAISDFAPPGWVDFVKDKTVDTGQSATWQGEFP 222

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           L    G   +V ++ +            G R      ++          + L+++ +   
Sbjct: 223 LMRPSG--QWVYLEWSISAHVE-----PGMRMALAADISERVELDSRRQEVLEREQAARA 275

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
              +  S  + +   + S +   P   +   V  L       + +   +        ++ 
Sbjct: 276 -TAERLSRTKDDFIAVLSHELRTPLNAIAGWVHILKRRGGTPELIKGLDSIHRNVKAQAR 334

Query: 269 LPEQ--EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
           +     +     +   + ++++   ++          +      L      GE++ P  +
Sbjct: 335 IISDILDVSRINSGKLHLEREWTQPIEVVRSAIDALQASIAEKHLEIVLRAGEDIGPAWL 394

Query: 327 D--KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDD 359
           D  +    F+      + ++N S  +       DD
Sbjct: 395 DPTRFQQIFWNLLTNAIKFSNDSGRIDVSLSRDDD 429



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/277 (8%), Positives = 57/277 (20%), Gaps = 25/277 (9%)

Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV---------LKTEKYPLL 262
                V    +     +S    L+M  +  S      H  D+            E    L
Sbjct: 30  STARVVRAAGFQTMEAESGAQALQMAGEGISAVVLDVHLPDIDGFAVCRALRTREDTAQL 89

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
                S         +         Y       +       +     +        +   
Sbjct: 90  PVMHLSAAHVHAEDRVTGLNAGADAYLTHPVEPAVLVGTLQALIRARTAEDSLRRSDRRF 149

Query: 323 PETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
                +       +   G     NP+   +      + +  A        +         
Sbjct: 150 RAIYSQALSGIGLLERDGRFTDVNPAMARVLGRTRQEVLGRA-------ISDFAPPGWVD 202

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
                                ++ + +       I           +  +  E  ++D+R
Sbjct: 203 FVKDKTVDTGQSATWQGEFPLMRPSGQWVYLEWSISAHVEPGMRMALAADISERVELDSR 262

Query: 442 IN-----KRKMEIEVMQLCSILEATSDGIAIINREGI 473
                  ++       +L    +   D IA+++ E  
Sbjct: 263 RQEVLEREQAARATAERLSRTKD---DFIAVLSHELR 296


>gi|150402473|ref|YP_001329767.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus maripaludis C7]
 gi|150033503|gb|ABR65616.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus maripaludis C7]
          Length = 639

 Score =  309 bits (791), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 82/326 (25%), Positives = 157/326 (48%), Gaps = 11/326 (3%)

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
           ++     + +       +   L ++         E+++ G   ++ ++       +L  +
Sbjct: 323 LIGLFIALMVSYLINRGIISPLEQLKQGA-----ERVSNGRYDQKVIVDSDDEFGELAKA 377

Query: 552 SCYSLTMHDISE--WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                T  +IS+   K+   +L  +    ++  + KS+ +A VSHE+RTPLT+I G+ E+
Sbjct: 378 FNKMATQINISDEKLKKHAEELKASYNELKELDNLKSELIAIVSHELRTPLTSIKGYVEL 437

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           + +   G + N    +     D +   +  ++  +LD+SKIE G++ ++ E V+L   V 
Sbjct: 438 VLDGTMGAI-NDSQKKCLQVADDNIVRLRRLIESMLDLSKIERGELEMYREKVNLKGIVC 496

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
           + I  ++  A EK I +          I AD   + Q+  N++ NAI F+P+   I+IS 
Sbjct: 497 DVIEYLKPLATEKNIKLNREVEE--ITIEADKDRITQVLTNLIENAIKFSPANESIMISG 554

Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
                  V L+V D G G+   ++EK    F Q+ +S + +  G+GLGL + K++V+A+ 
Sbjct: 555 VLEDE-HVHLKVTDHGAGIPKKDMEKVFNRFYQVDSSTKRKKGGSGLGLAVCKSIVEAHK 613

Query: 790 GKFYIFSTPAKGTLIEIIFPLYDTSH 815
           G  ++ S   KG+   I+ P+   S 
Sbjct: 614 GSIWVESELGKGSTFHILLPISTESQ 639


>gi|292491538|ref|YP_003526977.1| PAS sensor protein [Nitrosococcus halophilus Nc4]
 gi|291580133|gb|ADE14590.1| PAS sensor protein [Nitrosococcus halophilus Nc4]
          Length = 366

 Score =  309 bits (791), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 71/362 (19%), Positives = 155/362 (42%), Gaps = 14/362 (3%)

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
              +L+A  D + I ++ G I+  N    ++ GY   +++ +P  + + +        Y 
Sbjct: 9   FRQLLDAAPDAMVISDQYGRIVLVNAMAEQMLGYSRAELIGQPIEILVPEQHRPGHGQYR 68

Query: 514 TEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSCYSLT--MHDISEWKQEKN 569
            E       + +   +      K+  L S  I +  +       +T  + DI+E K+ + 
Sbjct: 69  QEYYQHPRTRPMGEGRELHAVRKDGSLFSAEISLSPMEIEGNLLITSAIRDITERKEIQK 128

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
            L    +   + ++    F    SH+++ PL  +  +++++  +  G L +    E+  +
Sbjct: 129 ALERQTQELTRSNTELEQFAYVASHDLQEPLRMVSSYAQLLARRYRGQLDSD-ADEFIEF 187

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           +      +  ++NDLL  S++  G     F     ++ + + +  ++    E    +   
Sbjct: 188 MVDGATRMQALINDLLAYSRV--GTKGKPFTTTDGNQIIQQVLESLRFVIEETHAHLTVD 245

Query: 690 FANNIPRILADLRSVKQIALNILSNAIHF-TPSGGQIIISTTHTSNEEVILRVRDTGVGM 748
               +P ++AD   + Q+  N++SNA+ F      +I I+      ++VI  V D G+G+
Sbjct: 246 ---PLPVLIADRAQLVQLFQNLISNALKFRGEETPKIHIN-AKEEGDQVIFSVADNGIGI 301

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
                E+    F ++    +    GTG+GL + K +V+ + G+ ++ S P +GT      
Sbjct: 302 EPQYAERIFLLFQRLH--TKKEYPGTGIGLSICKKIVERHGGQIWLESKPDEGTTFFFTL 359

Query: 809 PL 810
           PL
Sbjct: 360 PL 361



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/134 (8%), Positives = 37/134 (27%), Gaps = 6/134 (4%)

Query: 322 TPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
             + +D  P    +    G +   N     +  Y   + I     +  L+       +  
Sbjct: 9   FRQLLDAAPDAMVISDQYGRIVLVNAMAEQMLGYSRAELIGQP--IEILVPEQHRPGHGQ 66

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
            +           +     LH ++ +       +        +   N+       +  + 
Sbjct: 67  YRQEYYQHPRTRPMGEGRELHAVRKDGS---LFSAEISLSPMEIEGNLLITSAIRDITER 123

Query: 441 RINKRKMEIEVMQL 454
           +  ++ +E +  +L
Sbjct: 124 KEIQKALERQTQEL 137



 Score = 38.5 bits (88), Expect = 5.5,   Method: Composition-based stats.
 Identities = 30/259 (11%), Positives = 65/259 (25%), Gaps = 28/259 (10%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL----KRQNTWYG 145
           D +G +  ++    + +G    ++IG  +  +    H   +           + +    G
Sbjct: 24  DQYGRIVLVNAMAEQMLGYSRAELIGQPIEILVPEQHRPGHGQYRQEYYQHPRTRPMGEG 83

Query: 146 KTTL-WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
           +       +G+      +++  P+     E  G     I    R   + + + K L+++ 
Sbjct: 84  RELHAVRKDGSLF--SAEISLSPM-----EIEG--NLLITSAIRDITERKEIQKALERQT 134

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
             L                   +Q          +   +   YA         +      
Sbjct: 135 QELTRSNTEL------------EQFAYVASHDLQEPLRMVSSYAQLLARRYRGQLDSDAD 182

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
           E              L            +     + +          S  F   E     
Sbjct: 183 EFIEFMVDGATRMQALINDLLAYSRVGTKGKPFTTTDGNQIIQQVLESLRFVIEETHAHL 242

Query: 325 TVDKCPIPFFVYSHGNLFY 343
           TVD  P+P  +     L  
Sbjct: 243 TVD--PLPVLIADRAQLVQ 259


>gi|170757669|ref|YP_001779992.1| sensory box histidine kinase [Clostridium botulinum B1 str. Okra]
 gi|169122881|gb|ACA46717.1| sensory box histidine kinase [Clostridium botulinum B1 str. Okra]
          Length = 617

 Score =  309 bits (791), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 85/362 (23%), Positives = 160/362 (44%), Gaps = 10/362 (2%)

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLF-GYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           ++E   D I I  ++  I+  N + ++L        +       F+ +     + + L  
Sbjct: 222 LIENARDAIIIHRKD-KIVFANESAAELLICNNNGKLENLNINNFILKEEQKKIRNKLEL 280

Query: 516 ILSLDLRQTLEKITLGSTKEEKL-LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA 574
           +          +  + + K +K+ +                  + DI+  KQ +      
Sbjct: 281 VYRNKSDIVCVEQVIQNNKRKKINVESISTYIIYNNRPAILSILRDITSQKQVEKLQKDV 340

Query: 575 KKIAEKESSHK------SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
           +K  E  +  +      +DFLA +SHE++TPL  I    +++   +       +  +Y  
Sbjct: 341 EKNIELLNESREYNKLITDFLANISHELKTPLNVIFTAVQILDLYKKDAKSYDKKEQYIK 400

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I ++   ++ ++N+LLD +K++SG + L+    ++   V E    V  YA  K I I  
Sbjct: 401 VIKQNCYRLMRLINNLLDTTKLDSGYLKLNLVNCNIVNLVEEITLSVVYYAESKNINIIF 460

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748
                   +  D   +++I LN+LSNAI FT SGG I ++     +  +I+ V+DTG+G+
Sbjct: 461 DTDVEEKIMAVDPDKIERIVLNLLSNAIKFTGSGGNIYVTVKDFEDN-IIISVKDTGIGI 519

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
              ++E     F Q+  + +   EG+G+GL L K+ V+ + G   I S   KG+   I  
Sbjct: 520 PEDKIENIFDRFVQVDKTLRRNKEGSGIGLYLVKSFVNMHEGTIDIQSEIGKGSEFIINI 579

Query: 809 PL 810
           P+
Sbjct: 580 PV 581


>gi|192288925|ref|YP_001989530.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           TIE-1]
 gi|192282674|gb|ACE99054.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           TIE-1]
          Length = 1076

 Score =  309 bits (791), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 108/689 (15%), Positives = 218/689 (31%), Gaps = 69/689 (10%)

Query: 170 SRNREFSGFRGFGIVHVNRVDND----PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF 225
            R+REF    GF I   +R+ +D       L  R       L     G        +   
Sbjct: 243 DRSREF----GFDIGKPSRIQDDFPRMSELLLLRKGGDTPTLVADSAGDRFGAGWDWAEL 298

Query: 226 SQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP--------------E 271
                   + M+  VS  +   A ++  +      +L +   + P               
Sbjct: 299 PNGPRLAVVEMRPYVSLTSVQTAVRNSTILGGTVAILVAMLMAFPLARSLTRPLVRITNS 358

Query: 272 QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD-----EGENLTPETV 326
              F +  +    K      +   ++      S     +++   +         +   T+
Sbjct: 359 IVAFSSSGVPVKVKTGGGHEINMLAEAFTRMASESQRKAVALASEVEQLSRIAEVLQNTI 418

Query: 327 DKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
           D    P  V    G +   NP+        S   +          DA          P++
Sbjct: 419 DNMVDPVLVADANGMVILTNPAARETFGQLSGVGMLNTTRSFDRFDADGNPMAQDQSPLL 478

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
                 T I     +  I   R + L     P    N+  E      +  +   T+  + 
Sbjct: 479 RAYRGETIINFEFAVQPIGSARRSYLIANGRPL--RNETGEIQGAVMVYHDITKTKKAED 536

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            +        +I++   D    ++ +G I   +     + G+  E+ + + F        
Sbjct: 537 ALRRSEQMSRAIIDTALDAFVQLDAQGRITDWSPHAESMLGWSREEAIGQDFGELALPPD 596

Query: 506 PSV-----MNHYLTEILSL-DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS--LT 557
            +         ++  I     + Q          ++   ++L + +  LP    +   + 
Sbjct: 597 QTREIKTGYRRFIEAIEHDMSVIQGHRIEIEAVRRDGSPIALEVSMTALPVEGRFVVNVF 656

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
           M D++E    + +L  ++K+              ++H+    LT I G  ++I +   G 
Sbjct: 657 MRDLTEKIAFEEQLRQSQKM-----ESIGQLTGGIAHDFNNMLTVITGTIDIISD---GV 708

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
              P     A  I  + +   ++   LL  ++    K  L  +   ++  +S   SL++ 
Sbjct: 709 ADQPHLAAIAKLISEAADRGAELTRLLLAFAR----KQPLRPDETEVNALLSGLQSLLRP 764

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT------- 730
               + I + T  A +   I  D   ++   +N+  NA    P GG++ I T+       
Sbjct: 765 TL-GEPIEVETVLAPDTWSIYVDRGQLESALVNLAVNARDAMPKGGKLTIETSNVVVDPD 823

Query: 731 -------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
                      + V++ + D+G G+      K   PF          G+GTGLGL +   
Sbjct: 824 LGKRFGDLAPGDYVMIAITDSGCGIPETIRSKVFDPFFTTK----EVGKGTGLGLSMVYG 879

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
            +  + G   + S   +GT   +  P   
Sbjct: 880 FIKQSGGHITLDSEEGQGTTFRLYLPRAQ 908



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/257 (10%), Positives = 58/257 (22%), Gaps = 18/257 (7%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-----NHIGDLLKRQNT 142
            +DA G + + S      +G    + IG    +++                 + ++   +
Sbjct: 558 QLDAQGRITDWSPHAESMLGWSREEAIGQDFGELALPPDQTREIKTGYRRFIEAIEHDMS 617

Query: 143 W----YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
                  +      +G+ + + + + ALP+  R      F     +             +
Sbjct: 618 VIQGHRIEIEAVRRDGSPIALEVSMTALPVEGR------FVVNVFMRDLTEKIAFEEQLR 671

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
           +  K  S                  I                 +       +      E 
Sbjct: 672 QSQKMESIGQLTGGIAHDFNNMLTVITGTIDIISDGVADQPHLAAIAKLISEAADRGAEL 731

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
             LL +     P + D   +N      +           E    L+              
Sbjct: 732 TRLLLAFARKQPLRPDETEVNALLSGLQSLLRPTLGEPIEVETVLAPDTWSIYVDRGQLE 791

Query: 319 ENLTPETV---DKCPIP 332
             L    V   D  P  
Sbjct: 792 SALVNLAVNARDAMPKG 808



 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/377 (7%), Positives = 86/377 (22%), Gaps = 30/377 (7%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIG-----MRLCDVSDILHIDPNNHIGDLLK-RQNTW 143
           DA+G +   +    +T G  +   +G               +    +    L   R  T 
Sbjct: 429 DANGMVILTNPAARETFGQLSG--VGMLNTTRSFDRFDADGNPMAQDQSPLLRAYRGETI 486

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                     G+     +     P+ +   E  G     + H            +R ++ 
Sbjct: 487 INFEFAVQPIGSARRSYLIANGRPLRNETGEIQGA--VMVYHDITKTKKAEDALRRSEQM 544

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPP----PHLRMKNKVSSLTEYYAHKDDVLK---- 255
              + +           +  I              R +       E     D   +    
Sbjct: 545 SRAIIDTALDAFVQLDAQGRITDWSPHAESMLGWSREEAIGQDFGELALPPDQTREIKTG 604

Query: 256 -----TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310
                      ++  +    E E     + +    +     L    +             
Sbjct: 605 YRRFIEAIEHDMSVIQGHRIEIEAVRR-DGSPIALEVSMTALPVEGRFVVNVFMRDLTEK 663

Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
           ++      ++   E++ +         +  L     +  +++   +         ++ L+
Sbjct: 664 IAFEEQLRQSQKMESIGQLTGGIAHDFNNMLTVITGTIDIISDGVADQ--PHLAAIAKLI 721

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
                      + ++ +   +        ++ +     + L     P        E +  
Sbjct: 722 SEAADRGAELTRLLLAFARKQPLRPDETEVNALL----SGLQSLLRPTLGEPIEVETVLA 777

Query: 431 NGIEPEDVDTRINKRKM 447
                  VD    +  +
Sbjct: 778 PDTWSIYVDRGQLESAL 794


>gi|153939551|ref|YP_001389707.1| sensory box histidine kinase [Clostridium botulinum F str.
           Langeland]
 gi|152935447|gb|ABS40945.1| sensory box histidine kinase [Clostridium botulinum F str.
           Langeland]
          Length = 617

 Score =  309 bits (791), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 85/362 (23%), Positives = 160/362 (44%), Gaps = 10/362 (2%)

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLF-GYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           ++E   D I I  ++  I+  N + ++L        +       F+ +     + + L  
Sbjct: 222 LIENARDAIIIHRKD-KIVFANESAAELLICNNNGKLENLNINNFILKEEQKKIRNKLEL 280

Query: 516 ILSLDLRQTLEKITLGSTKEEKL-LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA 574
           +          +  + + K +K+ +                  + DI+  KQ +      
Sbjct: 281 VYRNKSDIVCVEQVIQNNKRKKINVESISTYIIYNNRPAILSILRDITSQKQVEKLQKDV 340

Query: 575 KKIAEKESSHK------SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
           +K  E  +  +      +DFLA +SHE++TPL  I    +++   +       +  +Y  
Sbjct: 341 EKNIELLNESREYNKLITDFLANISHELKTPLNVIFTAVQILDLYKKDAKSYDKKEQYIK 400

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I ++   ++ ++N+LLD +K++SG + L+    ++   V E    V  YA  K I I  
Sbjct: 401 VIKQNCYRLMRLINNLLDTTKLDSGYLKLNLVNCNIVNLVEEITLSVVYYAESKNINIIF 460

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748
                   +  D   +++I LN+LSNAI FT SGG I ++     +  +I+ V+DTG+G+
Sbjct: 461 DTDVEEKIMAVDPDKIERIVLNLLSNAIKFTGSGGNIYVTVKDFEDN-IIISVKDTGIGI 519

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
              ++E     F Q+  + +   EG+G+GL L K+ V+ + G   I S   KG+   I  
Sbjct: 520 PEDKIENIFDRFVQVDKTLRRNKEGSGIGLYLVKSFVNMHEGTIDIQSEIGKGSEFIINI 579

Query: 809 PL 810
           P+
Sbjct: 580 PV 581


>gi|110634254|ref|YP_674462.1| PAS/PAC sensor hybrid histidine kinase [Mesorhizobium sp. BNC1]
 gi|110285238|gb|ABG63297.1| PAS/PAC sensor hybrid histidine kinase [Chelativorans sp. BNC1]
          Length = 651

 Score =  309 bits (791), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 90/528 (17%), Positives = 175/528 (33%), Gaps = 38/528 (7%)

Query: 308 HPSLSAYFDEGENLTPETVDKCPI--PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365
             +        E+     V+       + +   G +   NP       Y++ + I     
Sbjct: 3   RANRELLSGSAEDRYRLLVEAITDYAVYMLDIDGYVVSWNPGAQRFKGYEASEIIGQ--H 60

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
            S              K + +  S+       A    ++ +         I     +   
Sbjct: 61  FSQFYTPEDREAGLPQKALAVAASEGR---YEAEGWRLRKDGSRFWTHAVID-PIRDPAG 116

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKL 484
             +    I  +  + +  +  ++    Q   +++  +D  I +++  G I+S N    ++
Sbjct: 117 RLIGFAKITRDLTERKAAETALKQSEEQFRILVQGVTDYAIFMLDPNGRIISWNAGAKRI 176

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
            GY   +I+ + F+                 + +       EK      K+       ++
Sbjct: 177 KGYDASEIIGQHFSR-FYMEDERERGEPQRGLKTAAKEGHFEKEGWRVRKDGSRFWASVV 235

Query: 545 IKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKES--SHKSDFLARVSHEIRT 598
           I  +       +       DI+E K+ +  L  A++   +             V+H+   
Sbjct: 236 IDAIRDERGELIGFAKVTRDITEKKEAQRALDEAREALFQAQKLEAIGQLTGGVAHDFNN 295

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
            L  I+   ++++ +   P  + R     +   ++      +   +L  ++    +  L 
Sbjct: 296 LLMVILSSLDLLRRKL--PDNDERIRSLVDNAVQAAQRGASLTQRMLSFAR----RQELK 349

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718
              V L E V     L+Q       I I T F   +P++  D    +   LN+  NA   
Sbjct: 350 RTAVDLPELVHGISDLLQ-RTLGPLIRIETRFPPTLPKVHTDANQFESALLNLAINARDA 408

Query: 719 TPSGGQIIISTTHT-----------SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
            PSGG +IIS                   V L V D G GM    L +A  PF       
Sbjct: 409 MPSGGPLIISAREETISGGPGARLAPGRYVCLSVEDRGEGMDEETLARATDPFFTTKG-- 466

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
              G+GTGLGL + + + + + G+  + S   +GT  E+  P  D   
Sbjct: 467 --IGKGTGLGLSMVQGLAEQSGGRLSLKSVKGEGTTAEMWLPAIDAEE 512



 Score = 78.5 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 23/247 (9%), Positives = 67/247 (27%), Gaps = 8/247 (3%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + +D  GY+   +    +  G  A ++IG            +       L    +    
Sbjct: 29  VYMLDIDGYVVSWNPGAQRFKGYEASEIIGQHFSQFYTPEDREAGLPQKALAVAASEGRY 88

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +   W +              PI        GF    I              K+ +++F 
Sbjct: 89  EAEGWRLRKDGSRFWTHAVIDPIRDPAGRLIGFAK--ITRDLTERKAAETALKQSEEQFR 146

Query: 206 HLHEIKKGHS-SVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEKYPL- 261
            L +    ++  +      I S  +    ++    +++        + +D  +  +    
Sbjct: 147 ILVQGVTDYAIFMLDPNGRIISWNAGAKRIKGYDASEIIGQHFSRFYMEDERERGEPQRG 206

Query: 262 --LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
               ++E    ++      + +++        +++   E   +       +         
Sbjct: 207 LKTAAKEGHFEKEGWRVRKDGSRFWASVVIDAIRDERGELIGFAKVTRDITEKKEAQRAL 266

Query: 320 NLTPETV 326
           +   E +
Sbjct: 267 DEAREAL 273


>gi|17229460|ref|NP_486008.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17131058|dbj|BAB73667.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 759

 Score =  309 bits (791), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 93/656 (14%), Positives = 214/656 (32%), Gaps = 64/656 (9%)

Query: 181 FGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV 240
           F I  + +  N        +++    L  +    S     ++D+       P  +  +  
Sbjct: 19  FLIQELIKEVNTANLELYPVERLSEALKILASDTSDGSVPRFDVMLLDLSLPDSQGIDTF 78

Query: 241 SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF 300
                           E   L     + + ++                 G +  +     
Sbjct: 79  V-----------RANRETNVLPIIVLTGIDDENLALKAMQKGAQDYLVKGQVTGDLLVRS 127

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDI 360
              +      +       E      +   P   FV++          +  +  +   + +
Sbjct: 128 IRYAI-ERQRVEEALRHSEERFRVALKNSP--IFVFNQDRDLRYTWIYNPIAGWTVEEML 184

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
                        +         +      R  ++    L T  ++              
Sbjct: 185 GKQDSEIMSEQDAQCLTAIKYHVLTTGIGTRQVVSIGTPLGTKYYD--------LTVEPL 236

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
            N+  + +       +  + ++ + K+  +     ++L+ T+DGI + + E  IL  N+ 
Sbjct: 237 RNESQDIVGITCACIDISERKLAEAKIREQ----AALLDITTDGICVRDLENKILFWNKG 292

Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
              L+G+   +++ K  +  L +     +   L  ++S       +      TK  K + 
Sbjct: 293 AENLYGWQAHEVIGKNASDLLFREPSLEVETALLNVISQGN---WQGELNKVTKTGKEIV 349

Query: 541 LRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
           +      +               DI++ K  + +L   +++            + ++H++
Sbjct: 350 VASRWSLVYDEQGKPKSILSVDTDITQKKHLEAQLFRTQRL-----ESIGTLASGIAHDL 404

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
              LT I+  ++++      P  + R       ++ +     D+V  +L  ++   GK  
Sbjct: 405 NNILTPILAGAQLL--PLKFPDADERTQHLLEILEINAKRGADLVKQVLSFARGVEGK-- 460

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716
                + L   + E + +++     K I + T   N++  +  D   + Q+ +N+  NA 
Sbjct: 461 --RITLQLKHLIVEVVKILKETFP-KSIEVYTDIPNDLWMVSGDSTQLHQVLMNLCVNAR 517

Query: 717 HFTPSGGQIIIS--------------TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
              P GG + IS                      +++ V DTGVG++   L++  +PF  
Sbjct: 518 DAMPDGGTLTISAENLLIDENYARMNLEAKQGPYIMITVSDTGVGISPENLDRIFEPFFT 577

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP-LYDTSHPH 817
                   G+GTGLGL     +V ++ G   ++S   +GT   +  P +  T  PH
Sbjct: 578 TKA----VGQGTGLGLSTVLGIVKSHGGFVNVYSEEGRGTTFRVYLPSVGGTEAPH 629


>gi|212288555|sp|A5A2P0|WALK_STASR RecName: Full=Sensor protein kinase walK
 gi|145423879|gb|ABP68577.1| YycG [Staphylococcus sciuri]
          Length = 419

 Score =  309 bits (791), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 77/372 (20%), Positives = 163/372 (43%), Gaps = 27/372 (7%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +  +   E E  +L S++   SDG+   +R G +   N    K+ G    D+  K     
Sbjct: 59  QEAQANTESEKRRLDSVITHMSDGVLATDRRGRVRIINEMALKMLGLECADVEAKHILDI 118

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
           L  +    ++       S  +    E+  +        ++   II+   F + Y   +HD
Sbjct: 119 LNIDDDYSLDDLQENNDSFIIDINSEEGIIAR------VNFSTIIQDTGFINGYIAVLHD 172

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           ++E    +N+              + +F+A VSHE+RTPLT++  + E ++   +     
Sbjct: 173 VTEQHILENE--------------RREFVANVSHELRTPLTSMRSYIEALEEGAWR--DP 216

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
                + N      + ++ +VNDLL +SK++S    ++ E ++ +  +++ I+  +  + 
Sbjct: 217 EVAPTFLNVTREETDRMIRLVNDLLQLSKMDSSSDQMNSELINFNMFINKIINRHE-MSQ 275

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN---EEV 737
            K +            +  D   + Q+  N+++NAI ++       +      N     +
Sbjct: 276 GKNVTFIRDIPVKGLFVEIDPDKMTQVFDNVITNAIKYSQE-SHKRVEFHVKQNTLYNRM 334

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
            ++++D G+G+   +++K    F ++  ++  +  GTGLGL + K +V+A+ G+ +  S 
Sbjct: 335 TIQIKDNGIGIPVNKVDKIFDRFYRVDKARARKMGGTGLGLAITKEIVEAHKGRIWASSK 394

Query: 798 PAKGTLIEIIFP 809
             +GT I I  P
Sbjct: 395 EGQGTSIYITLP 406


>gi|330828900|ref|YP_004391852.1| two-component system hybrid sensor histidine kinase/response
           regulator [Aeromonas veronii B565]
 gi|328804036|gb|AEB49235.1| Two-component system hybrid sensor histidine kinase/response
           regulator [Aeromonas veronii B565]
          Length = 698

 Score =  308 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 97/483 (20%), Positives = 181/483 (37%), Gaps = 25/483 (5%)

Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSD----NNAIKPVMLYRSDRTCIAASARLHTIQ 404
               +        I+G    + D  +L +     +      +  +       +A L    
Sbjct: 93  ARSWRMTPAFARAISGETLVIYDPAQLPELAPLASEPGWASVMLTGLQAPGFTATLICRH 152

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN--KRKMEIEVMQLCSILEATS 462
                    +    E+          N      +  ++      ++    +  S     S
Sbjct: 153 ARAGTFDLTSKAAMERCRPLIAQALVNITYRARLQEQVAVKTEALQASERRFRSFAAMAS 212

Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522
           D     + E  +   +       GY  E   +       +             +  LDLR
Sbjct: 213 DWFWETDAEHRLSYASEP-----GYLDEMTPQATRPTLYDYVCNKQSCDAQKYLQLLDLR 267

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS----LTMHDISEWKQEKNKLSHAKKIA 578
           Q +  + +    +     + +  +              T  DIS   + + +L+ A+  A
Sbjct: 268 QPVRGVRMQVALQHGPCWMEVSAEPCFDHDGLFIGYRGTARDISNQIRREEELARARDEA 327

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
           E  +  KS FLA ++HEIR+P+ A++G  +++++    P           +   S  L+ 
Sbjct: 328 EAANRAKSQFLAMMTHEIRSPMNAVLGMLDLVQHAELAP----EQQSLLRHATHSARLLQ 383

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RI 697
            I++D+LD SKIES  +  H E +   +     +  +Q  A  K I +      ++P  +
Sbjct: 384 TIIDDVLDFSKIESQTLVFHCETLQPVQLCQSLVEPLQARATAKGIALVYRVDESVPREL 443

Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757
             D   + Q+  N+L NA+ FT  G Q+ +        ++++ V DTG+G+ + +     
Sbjct: 444 QGDPMRLSQVMGNLLDNALKFTEQG-QVTLHLGWQDE-KLLISVSDTGIGIADADQALLF 501

Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP---LYDTS 814
           +PF Q+ NS   R  GTGLGL ++K +V    G+ ++ S P KG+      P   L   S
Sbjct: 502 EPFSQVDNSATRRFSGTGLGLAISKRLVTLMGGEIHLKSEPGKGSCFWFELPGMALPCHS 561

Query: 815 HPH 817
            P 
Sbjct: 562 QPQ 564



 Score = 55.4 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 44/419 (10%), Positives = 103/419 (24%), Gaps = 48/419 (11%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK 146
           W  DA   L   SE  P  +     +     L D               LL  +    G 
Sbjct: 216 WETDAEHRLSYASE--PGYLDEMTPQATRPTLYDYVCNKQSCDAQKYLQLLDLRQPVRGV 273

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                ++  +    ++++A P +  +  F G+RG                  R   +   
Sbjct: 274 RMQVALQ--HGPCWMEVSAEPCFDHDGLFIGYRG--TARDISNQIRREEELARARDEAEA 329

Query: 207 LHEIKKGHSSVEKEKYD-----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
            +  K    ++   +       +        H  +  +  SL  +  H   +L+T    +
Sbjct: 330 ANRAKSQFLAMMTHEIRSPMNAVLGMLDLVQHAELAPEQQSLLRHATHSARLLQTIIDDV 389

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
           L   +                   +     LQ  +      L +R   S+          
Sbjct: 390 LDFSKIESQTLVFHCETLQPVQLCQSLVEPLQARATAKGIALVYRVDESVPRELQGDPMR 449

Query: 322 TPETVDKC-----------PIPFFVYSHGNLFYANPSFLLLTKYKSVDDI------EIAG 364
             + +               +   +         + S   +    +   +      ++  
Sbjct: 450 LSQVMGNLLDNALKFTEQGQVTLHLGWQDEKLLISVSDTGIGIADADQALLFEPFSQVDN 509

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSD---------RTCIAASA-------RLHTIQWNRE 408
             +       L    + + V L   +          +C                 +    
Sbjct: 510 SATRRFSGTGLGLAISKRLVTLMGGEIHLKSEPGKGSCFWFELPGMALPCHSQPQREEGA 569

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
           ++L    +   + +   + +    ++      R+    +E     L  + E   D I +
Sbjct: 570 SALLPLDVLVVEDSPVNQLVVSLMLQKLVGKVRLAANGLEA----LAQVDEQIPDLILM 624


>gi|196231464|ref|ZP_03130322.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
 gi|196224317|gb|EDY18829.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
          Length = 944

 Score =  308 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 96/802 (11%), Positives = 237/802 (29%), Gaps = 106/802 (13%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK-- 146
           +D  G +   + +  +  G     ++  +   +    ++   +        +N+      
Sbjct: 35  VDEQGAIVFANAQAGRVFGYRPDDLL-HKPIQLLIPDNLHAQHARHQEHSAKNSRARHGG 93

Query: 147 ----TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
                     +G+   + + L+  P+ +             V             +   +
Sbjct: 94  GELDLRGRRSDGSEFVMDVGLS--PLETHRGSLV----IVSVRDLSEQKRVERRERDRLR 147

Query: 203 KFS---------------------HLHEIKKGHSSVEKEKYDIFSQQSPPP--------- 232
                                    +         ++     +    +P           
Sbjct: 148 VLELLNSGAPLQEILEFTVRAVEAEIPGAICSILLLDDSGKRLVHGAAPNLPEFFNDAVH 207

Query: 233 HLRMKNKVSS------------LTEYYAHKDDVLKTEKYPLLTSEE-SSLPEQEDFHTIN 279
            + + + V S            + + + H       +           S P       + 
Sbjct: 208 GVEIGDGVGSCGTAAYLGKLTIVEDIHTHPFWAKYVDLAKKAKVRACWSQPVFSSDKKVL 267

Query: 280 LNQYTKKQYFGTLQNNSKESFEYLSHR-----NHPSLSAYFDEGENLTPETVDKCP-IPF 333
                  +     +    E+ E  +                   E      +   P +  
Sbjct: 268 GTFAIYHREPSAPEARDIEAIEAAASYVSLAITRKRSEEELQASEARLHAIIHNTPNVAV 327

Query: 334 FVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
            +Y   G + + N +   +  ++  + I     L  L+  P+ +++       L  + ++
Sbjct: 328 ELYDMAGRVRFWNEAATRMFGWEIDEAIGKT--LDQLIHTPEEAESFLQLLRELSGTGKS 385

Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
                      + +       +     +   F        ++ +  + +  +  M     
Sbjct: 386 LGPLEYHFR--RRDGSEGW--SISTIFEIPGFGGVPMFVCMDVDITERKQAENAMRQSEE 441

Query: 453 QLCSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
           +   ++E   +   +++  +G +L  +    K++G   E + R P   F   ++      
Sbjct: 442 RFRQVVENIQEVFWMLDAKDGRLLYISPGYEKIWGRSSEALYRSPAAWFDAIHSDDRERV 501

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS----LTMHDISEWKQE 567
                L+    Q  ++       +  +  +      +  +  +         DI+E +Q 
Sbjct: 502 PNRSTLNHGADQ-YDEEYRIIRPDGSVRWIHDRAFPIRDNQGHVYRVAGVAEDITERRQI 560

Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
           + +L  ++K+              V+H+    L A++   E+    +  P       E  
Sbjct: 561 EERLRQSQKM-----EAIGQLAGGVAHDFNNILAAVMMEVELAATAKDVPADT---REGL 612

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
             I  + +    +   LL  S+    +  +    V ++  V+    ++Q     + + ++
Sbjct: 613 QVIGAAADKAAALTRQLLLFSR----RQVMQPRRVDVNGIVTTLAKMLQ-RILGEDVKVQ 667

Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS-------------- 733
                +   + AD   + Q+ +N+  NA    P+GG+++I T+                 
Sbjct: 668 LHLHPSALVVHADPGMLDQVIMNLAVNARDAMPAGGRLVIETSERHITEDELRASPDASS 727

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
              V+L V DTG+GMT        +PF          G+GTGLGL     +V  + G   
Sbjct: 728 GMHVVLAVSDTGMGMTEDVKAHLFEPFFTTKQP----GKGTGLGLATIFGIVKQHRGWIR 783

Query: 794 IFSTPAKGTLIEIIFPLYDTSH 815
           ++S   +GT   I  P  +  H
Sbjct: 784 VYSEIGQGTTFRIFLPACEAGH 805



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 55/133 (41%), Gaps = 4/133 (3%)

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
              ++EA++D + +++ +G I+  N    ++FGY  +D+L KP  + +  N  +    + 
Sbjct: 21  FQLLVEASADALLVVDEQGAIVFANAQAGRVFGYRPDDLLHKPIQLLIPDNLHAQHARHQ 80

Query: 514 TEILSLDLRQ--TLEKITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKN 569
                    +    E    G   +     + + +  L         +++ D+SE K+ + 
Sbjct: 81  EHSAKNSRARHGGGELDLRGRRSDGSEFVMDVGLSPLETHRGSLVIVSVRDLSEQKRVER 140

Query: 570 KLSHAKKIAEKES 582
           +     ++ E  +
Sbjct: 141 RERDRLRVLELLN 153



 Score = 45.0 bits (105), Expect = 0.057,   Method: Composition-based stats.
 Identities = 17/147 (11%), Positives = 37/147 (25%), Gaps = 16/147 (10%)

Query: 322 TPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGL---STLLDAPKLSD 377
               V+       V    G + +AN     +  Y+  D +     L     L        
Sbjct: 21  FQLLVEASADALLVVDEQGAIVFANAQAGRVFGYRPDDLLHKPIQLLIPDNLHAQHARHQ 80

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
            ++ K                 L   + +    +           +            + 
Sbjct: 81  EHSAKNSRARHGGG-----ELDLRGRRSDGSEFVM---DVGLSPLETHRGSLVIVSVRDL 132

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDG 464
            + +  +R+   E  +L  +LE  + G
Sbjct: 133 SEQKRVERR---ERDRLR-VLELLNSG 155


>gi|147669243|ref|YP_001214061.1| PAS/PAC sensor signal transduction histidine kinase
           [Dehalococcoides sp. BAV1]
 gi|146270191|gb|ABQ17183.1| PAS/PAC sensor signal transduction histidine kinase
           [Dehalococcoides sp. BAV1]
          Length = 852

 Score =  308 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 112/748 (14%), Positives = 250/748 (33%), Gaps = 82/748 (10%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRL----------CDVSDILHIDPNNHIGD----- 135
             G L   +    +  G    ++ G              D+   +  D     G      
Sbjct: 159 PDGKLIFANHIFEEVTGYLVSEVTGEDWKSCGLFSRETTDLIIKMFQDRKPDTGQPFELQ 218

Query: 136 LLKRQNT---WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192
           L+ +      + G + +   +  + Y+ +  +                        +   
Sbjct: 219 LIHKNGQTCWFSGHSRIINRDNKSSYLQLSAS---------------------DITICKK 257

Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD 252
              + +          +      S         S  +   + R       +T+  A   +
Sbjct: 258 SEKMLRLTRFALEQTTDAIFWTDSEGNFVDVNQSACNSLGYRREDLLKLKVTDIDALITN 317

Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
               E +       + L  +     I+  +   +     +Q +  E    ++   +  L 
Sbjct: 318 QTDWEAHWKNLKNSAYLSFESIHRNISGEEIPVEITANYMQCDKMEYN--VAIARNIHLR 375

Query: 313 AYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
              ++    T  +V+       +V   G++  AN S      Y   +       L+ +  
Sbjct: 376 KEAEKQLKFTSFSVEHTADSVLWVNQSGSIIAANMSACQSLGYTRTEL----CSLNVINI 431

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
            P        K + +        +  + + T     +N   +         +F       
Sbjct: 432 NPVCV-AERWKTLWVRLKQDINFSLESDMFT-----KNGQQIPIEVMCNFLEFEGIDYCC 485

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
            +  +  + +    ++     +     +  SD + +++ +  I   NRA +K      +D
Sbjct: 486 AVLRDITERKKVDARLLRAAEEWRITFDNISDIVFLLDNDFNIQRANRAFTKTLNCQPQD 545

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
           +L K     L       +N    ++++ D +++          ++        I  +  +
Sbjct: 546 VLNKKCYQVLHHADCPKVNCP--KLIASDTKKSQRIAYFEKNIDKHF---EETIDPILDT 600

Query: 552 SCY----SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
           +        T+ D++E  +   +L    ++A        +  A ++HE+  PLT++IGFS
Sbjct: 601 NGLSMGTVHTIKDVTEQHKITAQLMITDRLA-----SLGELSAGLAHELNNPLTSVIGFS 655

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
           E+I+ +           +    I +      +I+ +LL  ++    +     + V +++ 
Sbjct: 656 ELIQEKIL----PEDLRQDIQIISQEAQRAAEIIRNLLTFAR----RHEPSKDWVDMNQI 707

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF--TPSGGQI 725
           + + +++         I + T+   N+P I AD   ++Q+ LNI+ NA  +  T S G+ 
Sbjct: 708 IHKVLAICNYGQKVHNIQLITNLDPNLPEIKADYFQMQQVLLNIVINA-EYFMTQSHGEG 766

Query: 726 IISTTHTS-NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
            I  +    N+ + + +RD G GM+   L     PF          G+GTGLGL +   +
Sbjct: 767 TIVISSRKFNDSIQISIRDDGPGMSENVLNHIFDPFFTTK----EVGKGTGLGLSIGHGI 822

Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPLYD 812
           +  + GK Y  S+  KG    I  P+  
Sbjct: 823 ITQHGGKLYAESSEGKGATFFIEIPINQ 850



 Score = 78.1 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 35/257 (13%), Positives = 74/257 (28%), Gaps = 15/257 (5%)

Query: 319 ENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
            + + + +   P+       G L +AN  F  +T Y   +          L         
Sbjct: 141 PDFSDKNLPATPLVMGFQPDGKLIFANHIFEEVTGYLVSEVTGEDWKSCGLFSRETTDLI 200

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
                +   R   T       L  I  N +             +     +  +    +  
Sbjct: 201 IK---MFQDRKPDTGQPFE--LQLIHKNGQTCWFSGHSRIINRDNKSSYLQLSA--SDIT 253

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
             + +++ + +        LE T+D I   + EG  +  N++     GY  ED+L+   T
Sbjct: 254 ICKKSEKMLRLT----RFALEQTTDAIFWTDSEGNFVDVNQSACNSLGYRREDLLKLKVT 309

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSL 556
                 T      +     +L     L   ++      + + + I    +          
Sbjct: 310 DIDALITNQT--DWEAHWKNLKNSAYLSFESIHRNISGEEIPVEITANYMQCDKMEYNVA 367

Query: 557 TMHDISEWKQEKNKLSH 573
              +I   K+ + +L  
Sbjct: 368 IARNIHLRKEAEKQLKF 384



 Score = 55.0 bits (131), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 31/278 (11%), Positives = 74/278 (26%), Gaps = 9/278 (3%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWY 144
            +  D+ G   ++++    ++G     ++ +++ D+  ++    +       LK      
Sbjct: 276 IFWTDSEGNFVDVNQSACNSLGYRREDLLKLKVTDIDALITNQTDWEAHWKNLKNSAYLS 335

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            ++    I G    +P+++ A  +     E++      I     +  +     K      
Sbjct: 336 FESIHRNISGE--EIPVEITANYMQCDKMEYN----VAIARNIHLRKEAEKQLKFTSFSV 389

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH-KDDVLKTEKYPLLT 263
            H  +     +          S      + R +    ++         +  KT    L  
Sbjct: 390 EHTADSVLWVNQSGSIIAANMSACQSLGYTRTELCSLNVININPVCVAERWKTLWVRLKQ 449

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
               SL                   F   +                 + A          
Sbjct: 450 DINFSLESDMFTKNGQQIPIEVMCNFLEFEGIDYCCAVLRDITERKKVDARLLRAAEEWR 509

Query: 324 ETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDI 360
            T D      F+  +  N+  AN +F      +  D +
Sbjct: 510 ITFDNISDIVFLLDNDFNIQRANRAFTKTLNCQPQDVL 547


>gi|237748261|ref|ZP_04578741.1| two-component system sensor histidine kinase [Oxalobacter
           formigenes OXCC13]
 gi|229379623|gb|EEO29714.1| two-component system sensor histidine kinase [Oxalobacter
           formigenes OXCC13]
          Length = 927

 Score =  308 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 108/652 (16%), Positives = 207/652 (31%), Gaps = 56/652 (8%)

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
           H+ +     V +  Y +    S        +   +        D     E+         
Sbjct: 14  HDERYRFKWVSENFYRMMGFDSESELYEATD--GAYASLVHPDDLDKLVEEVHQSKIANV 71

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKE----------SFEYLSHRNHPSLSAYFDE 317
           +   +      N +            +   +          +                  
Sbjct: 72  ASHFEYRMIKKNGDIIWVHDVGRCFTDLDGDNVTSCFVSDITRRIERDAQEKDTRLEISR 131

Query: 318 GENLTPETVDKCPIPFF---VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
             +   +  D  P       + S   +  AN     +  Y   + ++        L    
Sbjct: 132 KTDFLSQLYDTIPCGIVQMSIDSGHRIINANRGAWEIFGYTRDEYLQEKN--DPFLHVLD 189

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA-MTFIPFEKANQFPENMPQNGI 433
                  K V     +   I        ++ +       +T       +           
Sbjct: 190 RDKFWIHKRVDHLAVNGGSITYERE--AVKKDGSTGWISVTIERLFNFDGIEVLQAVYSD 247

Query: 434 EPEDVD-TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL------FG 486
             E     +  +++  IE   L + +      I        +  T      L        
Sbjct: 248 ISEVKKLQKEQEQERAIENRSLRAAIYTAYQLII------RVNLTQDTYEALSERDYVVN 301

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK-------ITLGSTKEEKLL 539
           Y       +          P   + Y+       + +  +K              +    
Sbjct: 302 YEPYGYFNELMEEVENGLHPDYRDAYIGTFTRQRMIERFDKGEKEIYMEYQRMGADGIYH 361

Query: 540 SLRIIIKKLPF---SSCYSLTMHDISEWKQEKNK-----LSHAKKIAEKESSHKSDFLAR 591
            + +   ++          + +  + + ++ +       L +A   A   +  KSDFL+R
Sbjct: 362 WVSLTGIRIDNPYNDDTLCILLTKVLDEQRAEQAVQEQVLKNALSAARMANQAKSDFLSR 421

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           +SH+IRTPL AIIG S +    +          +  + ID S   +L ++ND+LD+S+IE
Sbjct: 422 MSHDIRTPLNAIIGMSTI---SQLKMKEPEVLADCLSKIDVSSRYLLSLINDILDMSRIE 478

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALN 710
           SGKM L  E     E +    ++V   A   ++  +     ++ R    D   + QI +N
Sbjct: 479 SGKMALSSERFDFVELIGSINTIVYPQAVAGKLAYQIHQHESLDRYYEGDTLRINQILMN 538

Query: 711 ILSNAIHFTPSGGQIIISTTHTSN----EEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
           +LSNA+ FTP GG+I +  + +        +  RV DTG+GM++  +++   PF Q  + 
Sbjct: 539 LLSNAVKFTPEGGKIDVHISESRRSNGFAYIEFRVSDTGIGMSSDFMKRLYLPFEQETDD 598

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
                 G+GLGL +  ++V    G     S   +GT   ++ PL   +   D
Sbjct: 599 MARNKVGSGLGLSIVYSLVQIMGGTIDAKSEKNRGTTFTVVIPLRLAAPDGD 650



 Score = 43.5 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/145 (9%), Positives = 44/145 (30%), Gaps = 15/145 (10%)

Query: 457 ILEATSDG--IAIINREGIILSTNRAVSKLFGYPVE----DILRKPFTVFLEQNTPSVMN 510
           +L     G  I   +        +    ++ G+  E    +     +   +  +    + 
Sbjct: 1   MLHQIPGGTMICHHDERYRFKWVSENFYRMMGFDSESELYEATDGAYASLVHPDDLDKLV 60

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII---IKKLPFSSCYSLTMHDISEWKQE 567
             + +    ++            K   ++ +  +      L   +  S  + DI+   + 
Sbjct: 61  EEVHQSKIANVAS--HFEYRMIKKNGDIIWVHDVGRCFTDLDGDNVTSCFVSDITRRIER 118

Query: 568 KNKLSHAKKIAEKESSHKSDFLARV 592
             +    +    +    K+DFL+++
Sbjct: 119 DAQEKDTRLEISR----KTDFLSQL 139


>gi|163792591|ref|ZP_02186568.1| Signal transduction histidine kinase [alpha proteobacterium BAL199]
 gi|159182296|gb|EDP66805.1| Signal transduction histidine kinase [alpha proteobacterium BAL199]
          Length = 385

 Score =  308 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 105/361 (29%), Positives = 175/361 (48%), Gaps = 7/361 (1%)

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF-TVFLEQNTPSVMNHY 512
             SI E  + G+     +G +++ N A+  L GY  E  + K       +          
Sbjct: 15  YRSIFENANIGLYRSTPDGRLVTANPALVALNGYADEATMIKALQETGNQWYVEPGRRAE 74

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEK 568
              +++   R       +      + + +      +   +        T+ D+++     
Sbjct: 75  FHRLIAEHGRVGDFVSEVYRMHTRERIWVSENAWSVHDEAGRIAFYEGTVQDVTDRVSAD 134

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
            +LS A++ AE  S  KS FLA +SHE+R+PL AIIGF+E+I  +  GP  +PRY EYA 
Sbjct: 135 RQLSGARRAAEAASDAKSTFLAVMSHELRSPLNAIIGFAEIIAGRLLGP-TDPRYFEYAE 193

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I  SG  +L++++D+LD+SKI +GKM+L  + V +         L     +  ++ +  
Sbjct: 194 DIRVSGTHLLELISDILDLSKIGAGKMHLDEQHVDISNLTRRTARLFAANLSTAQLELVN 253

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748
           +     P + AD   + QI +N+++NAI FTP GG I ++   T++  V+++V DTG+GM
Sbjct: 254 AVPTGFPILRADPVRLGQIIVNLVANAIKFTPPGGTITVNAEDTTDA-VLIKVSDTGIGM 312

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           T  E+ +A +PF Q          GTGLGL + + +   + G   I S    GT + I  
Sbjct: 313 TAQEVARAPEPFVQSGRPFNKSRGGTGLGLSICRDLTSLHGGTLTIDSVKGTGTTVTIHL 372

Query: 809 P 809
           P
Sbjct: 373 P 373



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/257 (8%), Positives = 63/257 (24%), Gaps = 20/257 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNTW 143
            +     G L   +  L    G      +   L +  +  +++P        L+      
Sbjct: 26  LYRSTPDGRLVTANPALVALNGYADEATMIKALQETGNQWYVEPGRRAEFHRLIAEHGRV 85

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
               +      T   + +   A  ++      + + G   V                 + 
Sbjct: 86  GDFVSEVYRMHTRERIWVSENAWSVHDEAGRIAFYEG--TVQDVTDRVSADRQLSGARRA 143

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK-DDVLKTEKYPLL 262
                + K    +V   +              +  ++   T+    +  + ++     LL
Sbjct: 144 AEAASDAKSTFLAVMSHELRSPLNAIIGFAEIIAGRLLGPTDPRYFEYAEDIRVSGTHLL 203

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
                 + +  D   I   +    +    + N ++ +    +     +            
Sbjct: 204 ----ELISDILDLSKIGAGKMHLDEQHVDISNLTRRTARLFAANLSTAQL---------- 249

Query: 323 PETVDKCPIPFFVYSHG 339
            E V+  P  F +    
Sbjct: 250 -ELVNAVPTGFPILRAD 265


>gi|158338978|ref|YP_001520155.1| PAS/PAC sensor signal transduction histidine kinase [Acaryochloris
           marina MBIC11017]
 gi|158309219|gb|ABW30836.1| PAS/PAC sensor signal transduction histidine kinase [Acaryochloris
           marina MBIC11017]
          Length = 811

 Score =  308 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 82/533 (15%), Positives = 187/533 (35%), Gaps = 58/533 (10%)

Query: 315 FDEGENLTPETVDKCPIPFFVYSHG--NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
             +      +  D  P  +         +   N + +    Y   + +     +  L   
Sbjct: 298 LKKSAAQYQDLYDNAPDMYLSVDVDSTKILRCNQTLMKELGYSYPELVGR--SVLDLYHP 355

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
              SD        L + +            +Q     +L ++       +Q  +      
Sbjct: 356 DSRSDAKESFQTFLEKGE-----VRNGNLLVQRKDGTTLNVSLNAQGFRDQQGKLKYSRS 410

Query: 433 IEPEDVDTRI-------------------------NKRKMEIEVMQLCSILEATSDGI-- 465
              +  + +                            + ++    +L   LEA+ DG   
Sbjct: 411 SWRDISERKRLENQLKQMNAELEERVKNRTLALQIAVQSLKESESRLELALEASGDGWWD 470

Query: 466 --AIINREGIILSTNRAVSKLFGYPVEDIL--RKPFTVFLEQNTPSVMNHYLT-EILSLD 520
              + +      S +    ++ GY +E++    K +  +   +    +   L   +    
Sbjct: 471 WNILTDE----TSWSTQFYQILGYELEELPSSFKTWQSWTHPDDLLRIKTLLKKHLQDPS 526

Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKI 577
           +    +      +++ K +S    +                HDISE KQ + +L      
Sbjct: 527 IPYVFDYRVRTKSEQWKWISAMGKVVAWNDQGEPLRMVGMHHDISERKQAEQELQRINSE 586

Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
             + +     F    SH+++ PL  I  F++++ ++  G L +     Y  YI      +
Sbjct: 587 LIRSNQELGHFAYVASHDLQEPLRKIGSFTDLLADRYQGQL-DETADRYIRYITDGAMRM 645

Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697
             +++DLL+ S++  G+  L  +P +L   + +  S ++    ++++ I      ++P +
Sbjct: 646 QGLIDDLLNYSRV--GRAELKVQPTALSSILEKVKSDLEKVIEKRQVEIIID---SLPTV 700

Query: 698 LADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRVRDTGVGMTNYELEKA 756
             D   + Q+  N++SNAI +  +   +I I       +   + V+D G+G+     ++ 
Sbjct: 701 AVDPVLMGQVFQNLISNAIKYCQADRPRIYIR-ATQDQKFWTISVQDNGIGINPQFTDRI 759

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
              F ++    +    GTG+GL + K +V+ + G+ ++ S   KG       P
Sbjct: 760 FVIFQRLH--HREEYSGTGIGLAICKKLVERHGGQIWVDSEEGKGANFSFTLP 810



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/368 (10%), Positives = 94/368 (25%), Gaps = 43/368 (11%)

Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
                   LL++  +    +E          +      +   +   + E    R   S+ 
Sbjct: 88  ARVQGGIKLLSAAIAIWTTREFIANTLQTL-SPSHRTSSANKSQLVNQENEGSRQQESVW 146

Query: 313 AYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
               +  N   E                +   NP+F  +  Y   D +      +     
Sbjct: 147 WENQQTLNNIFE-YSLIGKAILTPDEDWIR-VNPAFYKILGYSEADLL-QTNLRNITYPE 203

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
              +D +    ++         A               + ++       +   + +    
Sbjct: 204 DLAADQHYRDQLL----SGEISACRVEKRYCHKQGH-IVWVSLSLSLVRDSMGQPLYLIA 258

Query: 433 IEPEDVDTRINK-------------------------RKMEIEVMQLCSILEATSDGIAI 467
                 + +  +                           ++    Q   + +   D    
Sbjct: 259 EIDNISEHKQVETDLKLIIGQLNLAIKDRSSELDTAYSNLKKSAAQYQDLYDNAPDMYLS 318

Query: 468 INRE-GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
           ++ +   IL  N+ + K  GY   +++ +        ++ S         L     +   
Sbjct: 319 VDVDSTKILRCNQTLMKELGYSYPELVGRSVLDLYHPDSRSDAKESFQTFLEKGEVRNGN 378

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKES 582
              L   K+   L++ +  +              +  DISE K+ +N+L       E+  
Sbjct: 379 --LLVQRKDGTTLNVSLNAQGFRDQQGKLKYSRSSWRDISERKRLENQLKQMNAELEE-- 434

Query: 583 SHKSDFLA 590
             K+  LA
Sbjct: 435 RVKNRTLA 442



 Score = 62.7 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 46/465 (9%), Positives = 109/465 (23%), Gaps = 70/465 (15%)

Query: 50  EQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNY 109
            Q N   + QESV   N     N F +  I + +     +        ++    K +G  
Sbjct: 133 NQENEGSRQQESVWWENQQTLNNIFEYSLIGKAI-----LTPDEDWIRVNPAFYKILGYS 187

Query: 110 AFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTW--YGKTTLWPIEGTNLYVPIDLAALP 167
              ++   L +++    +  + H  D L          +      +G    V + L+   
Sbjct: 188 EADLLQTNLRNITYPEDLAADQHYRDQLLSGEISACRVEKRYCHKQGHI--VWVSLSLSL 245

Query: 168 IYSRNRE-----------------------FSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
           +     +                         G     I   +   +   +  K+   ++
Sbjct: 246 VRDSMGQPLYLIAEIDNISEHKQVETDLKLIIGQLNLAIKDRSSELDTAYSNLKKSAAQY 305

Query: 205 SHLHEIKKG-HSSVEKEKYDIFSQQSP---PPHLRMKNKVSSLTEYYAHKDDVLKTEKY- 259
             L++     + SV+ +   I                  V        H D     ++  
Sbjct: 306 QDLYDNAPDMYLSVDVDSTKILRCNQTLMKELGYSYPELVGRSVLDLYHPDSRSDAKESF 365

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK----ESFEYLSHRNHPSLSAYF 315
                +             +             ++           +        L    
Sbjct: 366 QTFLEKGEVRNGNLLVQRKDGTTLNVSLNAQGFRDQQGKLKYSRSSWRDISERKRLENQL 425

Query: 316 DEGENLTPETVD----KCPIPF-------------FVYSHGNLFYAN---------PSFL 349
            +      E V        I                  S    +  N           F 
Sbjct: 426 KQMNAELEERVKNRTLALQIAVQSLKESESRLELALEASGDGWWDWNILTDETSWSTQFY 485

Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
            +  Y+ ++++  +         P   D   IK ++        I           + + 
Sbjct: 486 QILGYE-LEELPSSFKTWQSWTHPD--DLLRIKTLLKKHLQDPSIPYVFDYRVRTKSEQW 542

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
                       N   E +   G+  +  + +  +++++    +L
Sbjct: 543 KWISAMGKVVAWNDQGEPLRMVGMHHDISERKQAEQELQRINSEL 587


>gi|16329279|ref|NP_440007.1| drug sensory protein A [Synechocystis sp. PCC 6803]
 gi|2507379|sp|P20169|DSPA_SYNY3 RecName: Full=Drug sensory protein A
 gi|288420|emb|CAA51377.1| drug sensory protein A [Synechocystis sp. PCC 6803]
 gi|1651759|dbj|BAA16687.1| drug sensory protein A [Synechocystis sp. PCC 6803]
          Length = 663

 Score =  308 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 81/428 (18%), Positives = 169/428 (39%), Gaps = 49/428 (11%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINK--RKMEIEVMQLCSILEATSDGIAIINREGIIL 475
                +  E +       E ++    +   ++  E  +L +++   +DG  +++    +L
Sbjct: 247 LPFGGELGELIVNFNEMAERLERYEAQNIEELTAEKAKLDTLVSTIADGAMLVDTNLQLL 306

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR------------- 522
             N    +LF +  + I+ +     L     + +   L E+ +                 
Sbjct: 307 LVNPTARRLFAWENKPIIGENLLENLPPEITAQLTQPLRELAADQGSLLFSPGHGPQEEE 366

Query: 523 -----QTLEKITLGSTKEEKLLSLRIIIKKLPFS---SCYSLTMHDISEWKQEKNKLSHA 574
                   E     +    + + L +               +T+ DI+            
Sbjct: 367 QDKTYAPEEFRISLTQPFPRTIRLMLTQVLDQNRENLRGIVMTVQDITR----------- 415

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
                + +  KS F++ VSHE+RTPL  I  F E + ++    L      E+    +   
Sbjct: 416 ---EVELNEAKSQFISNVSHELRTPLFNIKSFIETL-SEFGEDLSEVERKEFLETANHET 471

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
           + +  +VND+LD+SK+ES K+    + V L + + +++   QL A +K++ +      ++
Sbjct: 472 DRLSRLVNDVLDLSKLESSKI-YQLDAVDLYQLIEQSLRSYQLNAKDKQLQLEKILDPDL 530

Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIIS--------TTHTSN-EEVILRVRDTG 745
           P  L +   + Q+  N++ N+  FT +GG+II+                  V + + DTG
Sbjct: 531 PFALGNYDLLLQVMTNLIGNSFKFTKAGGKIIVRAYPLHRSNLRAEDGPGLVRVEISDTG 590

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+   +     + F ++ N +    EGTGLGL + K ++  +  + ++ S    GT   
Sbjct: 591 IGIDPEDQAAIFERFYRVEN-RVHTLEGTGLGLSIVKNIIAKHQSQIHLVSEVGVGTTFW 649

Query: 806 IIFPLYDT 813
               +Y +
Sbjct: 650 FDLAVYQS 657


>gi|326797022|ref|YP_004314842.1| Hpt sensor hybrid histidine kinase [Marinomonas mediterranea MMB-1]
 gi|326547786|gb|ADZ93006.1| Hpt sensor hybrid histidine kinase [Marinomonas mediterranea MMB-1]
          Length = 911

 Score =  308 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 92/376 (24%), Positives = 160/376 (42%), Gaps = 42/376 (11%)

Query: 478 NRAVSKLFGYPVEDILRK-PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
           N A   + G   +  + +     +        +     + +      +LE++     ++ 
Sbjct: 47  NPASRAIMGLDKDMKIHRLNIREYFGDAVAEGLYATYYKAIEARKPISLEQVIYIEEQQA 106

Query: 537 KLLSLRIIIKKLPFSSCY-SLTMHDISEWKQEK--------------------------- 568
              +L + I     ++ +      DI++ K  +                           
Sbjct: 107 CYDTLLVPIFDASGNATFICGVSRDITKIKTAEKVALEASEKLKEYNTGLEQLNETLDRK 166

Query: 569 -----NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
                  L +AK+  E+    KS F+AR+SHEIRTP+ A+IG S +    +     N   
Sbjct: 167 VKERTAALENAKQELEQALDAKSAFVARMSHEIRTPINAVIGLSNLALKTQL----NAEQ 222

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            +Y   I  SG+++L +VND+LD SKIE+G + L   P   +E V   I++    A EK 
Sbjct: 223 NDYLTKIKDSGDVLLGLVNDVLDFSKIEAGMLKLESVPFHPEELVRTTINMNSFSAYEKN 282

Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVIL-- 739
           + + T  A ++P  ++ D   ++QI +N+++NA+ FT  G   I +S+       V L  
Sbjct: 283 LELITDIAKDVPTELIGDPLRIQQILINLVNNAVKFTSEGSICIRLSSEEQEEGHVSLKC 342

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V DTG+G+    ++     F Q  +S   +  GTGLGL +   + +   G   + S   
Sbjct: 343 EVSDTGIGIPEEHMDTLFSSFAQADDSITRKFGGTGLGLTITSQLSELMGGSITVKSELG 402

Query: 800 KGTLIEIIFPLYDTSH 815
            GT   +  PL  +SH
Sbjct: 403 SGTTFTVHLPLKISSH 418


>gi|298481017|ref|ZP_06999212.1| two-component system sensor histidine kinase/response regulator,
           hybrid (one component system) [Bacteroides sp. D22]
 gi|298273040|gb|EFI14606.1| two-component system sensor histidine kinase/response regulator,
           hybrid (one component system) [Bacteroides sp. D22]
          Length = 885

 Score =  308 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 111/573 (19%), Positives = 196/573 (34%), Gaps = 38/573 (6%)

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
                  E  L  +   + + LN         T     +      +   +          
Sbjct: 185 MEWCRVNERELNMESISYRVRLNGEIFYMRIQTYLREQRSDGS-FNIEGYIQNITDIQHR 243

Query: 319 ENLTPETVDKCPIP----FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
            N                F     G + +AN  FL        +DI      +    A  
Sbjct: 244 RNDINTLTHAINNAKESIFAAKPDGTIIFANRRFLYNHGISENEDISQLKIYN---VAAD 300

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
           +    A                 A   +       +   T       +            
Sbjct: 301 MPTQEAWNERCKDVIHGGSSNFVAHHPSKINKGILAYEGTMYNVTNDSGEESYWSFA--- 357

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAI--INREGIILSTNRAVSKLFGYPVEDI 492
            +  +    + +++     + + +     GI +  IN +   +  NR           D 
Sbjct: 358 HDISERIRYEAQIKRLNQIMDTTINNLPAGIVVKEINNDFRYIYRNREAYNR-DLYKNDP 416

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS- 551
           + K    F              ++ +      L     G  +   ++ L     ++    
Sbjct: 417 VGKNDFDFYPPIVAEKKRQEDIQVATTGK--GLHWTAEGKDRNGNMIILDKRKIRVDGDE 474

Query: 552 ---SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                      DI+E +  K +L  +K+ AE   S KS FLA +SHEIRTPL AI+GFS 
Sbjct: 475 LSSPIIVSIEWDITELEIIKRELQSSKEKAEMSDSLKSAFLANMSHEIRTPLNAIVGFSH 534

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
           +I               Y N ++ +   +L ++N++LD+SKIESG +   F P SL    
Sbjct: 535 LIAESD----DAEERKTYYNIVNANNERLLQLINEILDLSKIESGTIEFSFGPASLHNLC 590

Query: 669 SEA--ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726
            E     + +     + + +    ++    I  D   V Q+  N++ NA+ FT  G    
Sbjct: 591 REVHDAHIFRT---PQGVSLVYESSDESLMIETDKNRVFQVISNLIGNAVKFTKEGS--- 644

Query: 727 ISTTHT-SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
           IS  +   + +++  V DTG G+   ++ +  + F ++ N      +GTGLGL + K++V
Sbjct: 645 ISYGYKLVDNQIVFHVTDTGTGIEPEKVGRVFERFAKLNN----HAQGTGLGLSICKSIV 700

Query: 786 DANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
           +   GK  + S   KGT      P Y  ++P +
Sbjct: 701 ERLGGKISVNSEFGKGTTFTFTLP-YTIANPAN 732



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/281 (11%), Positives = 80/281 (28%), Gaps = 18/281 (6%)

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDI 360
           +Y       ++    ++             I  + Y+     +          Y  V   
Sbjct: 108 QYRDITQRSNVKRQLEQANLTLRAIQKVAQIGQWTYNTKQNIFH------YLGYTGVLCE 161

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
           E    L+       + + +    +   R +   +   +  + ++ N E    M    + +
Sbjct: 162 ENVQNLAIEKYVELIVEEDRQSFMEWCRVNERELNMESISYRVRLNGE-IFYMRIQTYLR 220

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
             +   +    G      D     +    ++  L   +    + I     +G I+  NR 
Sbjct: 221 EQRSDGSFNIEGYIQNITDI----QHRRNDINTLTHAINNAKESIFAAKPDGTIIFANRR 276

Query: 481 VSKLFGYPVEDILRK--PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
                G    + + +   + V  +  T    N    +++       +        K   +
Sbjct: 277 FLYNHGISENEDISQLKIYNVAADMPTQEAWNERCKDVIHGGSSNFVAHHPSKINK--GI 334

Query: 539 LSLRIIIKKLPFSSC---YSLTMHDISEWKQEKNKLSHAKK 576
           L+    +  +   S    Y    HDISE  + + ++    +
Sbjct: 335 LAYEGTMYNVTNDSGEESYWSFAHDISERIRYEAQIKRLNQ 375



 Score = 47.7 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 24/182 (13%), Positives = 62/182 (34%), Gaps = 12/182 (6%)

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
             IL+ T+D + +++R G+ +        L+    + +L K     L + T   +     
Sbjct: 12  QRILKLTADTMLLVDRHGVCVDIEPH-CDLWFLQEDILLGKNIFELLPEYTRERVMPIFQ 70

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW--KQEKNKLS 572
            +L      +     +    E       +     P+         DI++    + + + +
Sbjct: 71  IVLEEQRSISKNFKLVLKD-ETFYFKCLM----FPYDGMVLCQYRDITQRSNVKRQLEQA 125

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
           +    A ++ +    +        +  +   +G++ V+  +    L   +Y+E     DR
Sbjct: 126 NLTLRAIQKVAQIGQWTYNT----KQNIFHYLGYTGVLCEENVQNLAIEKYVELIVEEDR 181

Query: 633 SG 634
             
Sbjct: 182 QS 183


>gi|125623280|ref|YP_001031763.1| sensor histidine kinase [Lactococcus lactis subsp. cremoris MG1363]
 gi|124492088|emb|CAL97017.1| sensor histidine kinase [Lactococcus lactis subsp. cremoris MG1363]
 gi|300070031|gb|ADJ59431.1| sensor histidine kinase [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 475

 Score =  308 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 77/384 (20%), Positives = 153/384 (39%), Gaps = 38/384 (9%)

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
           D    +  +E +  QL SIL    DG+   +R G I+  N++         E ++ K   
Sbjct: 100 DIVRTQNNLENQRNQLDSILAYMVDGVIATDRRGNIIMANKSALHYLNTSNELLMEKNIV 159

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS--- 555
             L+          L +          E          + +SL I        S +    
Sbjct: 160 DVLKIADQYNFYDLLEKEP--------EITIETHDAGNESISLHIKFALFRRESGFISGI 211

Query: 556 -LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
              +HD+++  + + +              +  F++ VSHE+RTPLT++  + E +++  
Sbjct: 212 IAVLHDMTKQDKAERE--------------RRLFVSNVSHELRTPLTSVKAYLEALEDGA 257

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS----- 669
                      +        N ++ +++DLL +S+++  ++ L+ E ++L   +      
Sbjct: 258 ID--DKETASSFIGVSLTETNRMIRMISDLLTLSRMDQDRIVLNKEIINLIAFLDYQINR 315

Query: 670 --EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727
             + +             +   +++    +  D   + Q+  NI+ NAI ++P GG I I
Sbjct: 316 LDQILETESNDLISSNFTLVRKYSDKPIWVEIDTDKIAQVIDNIIGNAIKYSPKGGTITI 375

Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN-SQQIRGEGTGLGLPLAKAMVD 786
                  + V++ ++D G+G+   +L K    F ++ N S+  +  GTGLGL +   +V 
Sbjct: 376 YVETRERD-VLISIKDEGMGIPKSDLLKIFDRFYRVDNASRNSKVGGTGLGLSIVHDIVK 434

Query: 787 ANMGKFYIFST-PAKGTLIEIIFP 809
            + G  +  S    KGT      P
Sbjct: 435 IHGGTIFASSEGEGKGTTFSFTLP 458


>gi|223936120|ref|ZP_03628034.1| signal transduction histidine kinase with CheB and CheR activity
            [bacterium Ellin514]
 gi|223895342|gb|EEF61789.1| signal transduction histidine kinase with CheB and CheR activity
            [bacterium Ellin514]
          Length = 1259

 Score =  308 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 127/796 (15%), Positives = 256/796 (32%), Gaps = 75/796 (9%)

Query: 27   KKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSE-NTFVFDPIPRTVRF 85
            K+K+             P   +         N ++       ++E +           RF
Sbjct: 524  KQKVFARTSGSPPLFHPPATRNRPIEKRMYSNLKADIPREAAETELSAQREADRLAASRF 583

Query: 86   T---WNIDAHGYL--------KEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG 134
                  IDA   +          ++       G   F ++ M   D+   L +     + 
Sbjct: 584  VPPSVLIDAEFQIIQFRGQTGTYLNPP----TGKPVFDLLKMAREDLVPPLRV----AVN 635

Query: 135  DLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR 194
               K   T   +   +   G +  V I++  +P+ +  R              R      
Sbjct: 636  RARKENKTMRQEGVRFKENGNDCTVAIEV--IPLKNLKR--------------RCYLVLF 679

Query: 195  ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254
              G+    K   +        S +  + +  + Q       ++ +++   EY     +  
Sbjct: 680  DAGQAASPKALPVEGGLSPAKSGQSGRREAKAGQQSRRRAELEQELTETREYLQSLQEQY 739

Query: 255  KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
            +        + E      E+  +IN    T K+   +         E +  RN       
Sbjct: 740  EAATADQQAAGEELQSANEELQSINEELETSKEELESSNEELTTINEEMVSRNEQLNRLI 799

Query: 315  FDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
             D                  +    N+ +  P    +    + D     G +   LD P 
Sbjct: 800  SDLKNLHVSIHTAIL----VLNRDLNIRHFTPEAEAMFNLLATDAGRPLGSVRHNLDCPD 855

Query: 375  LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
            L                     S R   IQ       ++   P+   +   +      + 
Sbjct: 856  LEAVVREV----------IDTVSVREREIQDKAGRWYSLRIRPYLTLDNKID--GAVVML 903

Query: 435  PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
             +    + ++++++     + +I+E     + +++ E  +   N A  + F     +   
Sbjct: 904  VDVNALKRSEQEVKKAHEYVQAIVENVP-PLLVLDEELRVEMANDAFCRHFQVSPTETEG 962

Query: 495  KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554
                              L + +                       + +   +L      
Sbjct: 963  SLIYDLGNGQWNIPELRRLLDEILPGNTAVKNFEVSHKFPHLGPRIMLLDACRLDHLRKI 1022

Query: 555  SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
             L + D ++ K+ +++L                F+  ++H++R+PL A+ GF+ ++  + 
Sbjct: 1023 ILCIQDATDQKKTESQL--------------ESFVYSIAHDLRSPLRAMQGFANMLVTEH 1068

Query: 615  FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
             GP  N    E+A  I+ S   +  +++DLL  +KI  G   +   PV L + V E ++ 
Sbjct: 1069 -GPAMNEEGREFAARIEASARFMDHLLSDLLAFAKI--GSQTIDLGPVDLRQLVEEVVAR 1125

Query: 675  VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
             Q+   +K   I       +P++ A   ++ Q+  N+LSNA+ F   G    +       
Sbjct: 1126 HQMEIQDKHSKIEIVGP--LPKVRAHASTLGQVITNLLSNALKFVAPGVSPQVRLWAEVR 1183

Query: 735  E-EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
               VIL V D G+G+T     K  + F ++         GTG+GL + +  V+   G   
Sbjct: 1184 GATVILSVEDNGIGITQENANKLFQIFRRLH--TTSSYPGTGIGLAIVQKGVERMGGSVG 1241

Query: 794  IFSTPAKGTLIEIIFP 809
            + STP KG+   I  P
Sbjct: 1242 VQSTPGKGSRFWIELP 1257


>gi|311067914|ref|YP_003972837.1| sporulation-specific ATP-dependent protein histidine kinase
           [Bacillus atrophaeus 1942]
 gi|310868431|gb|ADP31906.1| sporulation-specific ATP-dependent protein histidine kinase
           [Bacillus atrophaeus 1942]
          Length = 606

 Score =  308 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 100/491 (20%), Positives = 199/491 (40%), Gaps = 34/491 (6%)

Query: 322 TPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
               V+  P P  +   G + Y N + L +   ++ D I             +  D    
Sbjct: 145 FERLVETLPSPLCISVSGKIVYVNNAMLSMLGAETKDHIIGRWSYE--FIEEEYHDIVKN 202

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
           + + + +           +    W R +   +          +     +  +  +    +
Sbjct: 203 RILRMQKG------MEVGMIEQTWKRLDGTPVHLEVKAAPAIYKNQRAELLLLIDISSRK 256

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRKPFTVF 500
             +  ++    +   +++ + D IA+I   G  +  N +   LF     ED++ K     
Sbjct: 257 KFQTILQKSRERYQLLIQNSIDTIAVI-HNGKWVFMNESGISLFEAATYEDLIGKNIYDH 315

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP--FSSCYSLTM 558
           L       +   +  I        + K +   T + +L+   ++         +   + +
Sbjct: 316 LHPCDHEDVKKRIQNIAEHKTDSEVMKQSWF-TFQNRLIYTEMVCIPTTFFGETAVQVIL 374

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            DISE KQ +  +  ++K++           A ++HEIR PLTAI GF +++K    G  
Sbjct: 375 RDISERKQTEELMLKSEKLSIA-----GQLAAGIAHEIRNPLTAIKGFLQLMKPTMEGNE 429

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
                  Y + +    + +  I+++LL ++K +        E ++L + +SE  +L++  
Sbjct: 430 ------HYFDIVFSELSRIELILSELLMLAKPQQHAFK---EHLNLKKLISEVTALLETQ 480

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738
           AN   I I+T+F  +   I  D   +KQ+ +N++ NA+   P GG + I TT      V 
Sbjct: 481 ANLNGIFIKTAFQRDSIFINGDQNQLKQVFINLIKNAVESMPDGGTVEIDTT-EDEHSVH 539

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           + ++D G G+    L++  +PF         + +GTGLGL +   +++ + G   + S P
Sbjct: 540 VTIKDEGEGIPEKVLKRIGEPFLTT------KEKGTGLGLMVTFNIIENHQGTIQVDSKP 593

Query: 799 AKGTLIEIIFP 809
            KGT  +I FP
Sbjct: 594 EKGTAFKISFP 604


>gi|149377367|ref|ZP_01895112.1| Signal transduction histidine kinase [Marinobacter algicola DG893]
 gi|149358379|gb|EDM46856.1| Signal transduction histidine kinase [Marinobacter algicola DG893]
          Length = 1173

 Score =  308 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 99/422 (23%), Positives = 181/422 (42%), Gaps = 24/422 (5%)

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINK-----RKMEIEVMQLCSILEATSDGIAI 467
           M      +     + +  +    + +     +     ++    + +  S+ +   +G+  
Sbjct: 378 MFTSYAPQFGLTAQIILFSFALADRIKQVQGEALGWSQRALANLRRYQSLFDNAIEGVFQ 437

Query: 468 INREGIILSTNRAVSKLFGY--PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
           ++ +   ++ N A++KL GY    E +   P  +        V    + ++ S    + +
Sbjct: 438 MSLDRRFVTANPAMAKLMGYTSSRELLDLDPDALETCFADERVRRWVIGQLESRGTVKGI 497

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSCYS--LTMHDISEWKQEKNKLSHA------KKI 577
           E      + EE+  ++ +     P         T  D +E  Q +            K++
Sbjct: 498 EARYYTRSGEERWATISLHTVYTPDGDPAHLEGTCIDATERHQRQRIEREREQERLEKEL 557

Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
           A   +  KS FLA +SHEIRTPL AIIG+ E + +     L        A  + RSG  +
Sbjct: 558 ARNSAEAKSQFLANMSHEIRTPLAAIIGYGETLLD---PDLTEREKHTSAETVVRSGRHL 614

Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR- 696
           LD++ND+LD SKI++ K+++    V+L E + E  +     A EK +         +P  
Sbjct: 615 LDLINDILDHSKIDANKLDVDIVSVNLPELLDEIRAFFAPRAREKGLAFHIICEYPLPEK 674

Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL-RVRDTGVGMTNYELEK 755
           I  D    +QI +N+  NA+ FT  G  I ++       + ++ RV DTG+GM   +L +
Sbjct: 675 ISTDPTRFRQIIINLCGNALKFTEKGS-ISLNVRCDRQRQALVARVVDTGIGMKPEQLGR 733

Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF---PLYD 812
              PF Q   +   +  GTGLGL +++ + +   G   + ST  +G+  E+     P+ D
Sbjct: 734 LFDPFAQGSAAIARQYGGTGLGLSISRRLAELLGGNISVTSTYGEGSEFELSIATGPMED 793

Query: 813 TS 814
             
Sbjct: 794 AH 795



 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/129 (7%), Positives = 37/129 (28%), Gaps = 3/129 (2%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAF-KMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTW 143
            + +         +  + K +G  +  +++ +    +      +     +   L+ + T 
Sbjct: 435 VFQMSLDRRFVTANPAMAKLMGYTSSRELLDLDPDALETCFADERVRRWVIGQLESRGTV 494

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
            G    +    +       ++   +Y+ + + +   G  I    R         +  ++ 
Sbjct: 495 KGIEARYYTR-SGEERWATISLHTVYTPDGDPAHLEGTCIDATERHQRQRIEREREQERL 553

Query: 204 FSHLHEIKK 212
              L     
Sbjct: 554 EKELARNSA 562


>gi|119946935|ref|YP_944615.1| hybrid sensor and regulator fused [Psychromonas ingrahamii 37]
 gi|119865539|gb|ABM05016.1| Hpt sensor hybrid histidine kinase [Psychromonas ingrahamii 37]
          Length = 968

 Score =  308 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 80/274 (29%), Positives = 131/274 (47%), Gaps = 14/274 (5%)

Query: 550 FSSCYSL---TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
                        + S  K  +  L H K+IA K S  KS+FLA +SHEIRTP+  ++G 
Sbjct: 402 DEVGRLAESFVFMEASIRKNIQQAL-HEKEIAVKASQAKSEFLATMSHEIRTPMNGVLGM 460

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
           +E++               +   I  SG  +LDI+ND+LD SKIE+GK+ L   P+ L E
Sbjct: 461 TELVLETELSS----EQRRFMEMIKSSGFGLLDIINDILDFSKIEAGKLQLDNHPMQLQE 516

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQI 725
            +   ++ +   A +K + +  +    +   +L D   ++Q+  N++SNAI FT  G ++
Sbjct: 517 LIKHLVTSLSPLAKKKGLQLNYNLPQEMDTWVLGDRIRLRQVLTNLISNAIKFTQRG-EV 575

Query: 726 IISTTHTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           ++S            + +RVRD+G+G+     +K  + F Q  +S      GTGLGL ++
Sbjct: 576 LVSAVIFEQSATALSLQIRVRDSGIGIAPENQDKIFESFSQADSSTTRNYGGTGLGLAIS 635

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
           K +++   G     S   +GT       L  T  
Sbjct: 636 KQLIEMMGGSIGFSSELGQGTTFWFDLKLKPTEQ 669


>gi|323487713|ref|ZP_08092971.1| two-component sensor histidine kinase [Planococcus donghaensis
           MPA1U2]
 gi|323398447|gb|EGA91235.1| two-component sensor histidine kinase [Planococcus donghaensis
           MPA1U2]
          Length = 608

 Score =  308 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 83/398 (20%), Positives = 168/398 (42%), Gaps = 27/398 (6%)

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
           +     ++  +           +    +++  E E  +L S+L   +DG+   +R G I+
Sbjct: 230 VRVYSDDEIGQLARAFNHLTNRLQE--SQQSTESERRKLASVLSNMTDGVLSTDRRGRII 287

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS-LDLRQTLEKITLGSTK 534
             N    +L     E ++ +P T  L         + +    S      + E+ TL  T 
Sbjct: 288 LINDPALQLLNVSRETVINRPVTSVLGLEEEYTFENLIDMKESVTLDLSSYEQSTLLRT- 346

Query: 535 EEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
                +  +I K+  F +     +HD +E ++   +              + +F+A VSH
Sbjct: 347 -----TFSVIQKETGFVNGLIAVLHDNTEQEKIDIE--------------RREFVANVSH 387

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           E+RTPLT +  + E + +  +          + N        ++ +VNDLL +SK++S +
Sbjct: 388 ELRTPLTTMRSYLEALADGAWQ--DPDLAPNFLNVTQTETERMIRLVNDLLKLSKMDSSE 445

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714
             L  E V  +   +  I   +  +   ++            +  D   + Q+  NI+SN
Sbjct: 446 TELSKEMVEFNVFFNRIIDRFE-MSKSHKVNFMRQLPKEQYFVEIDPDKLTQVIDNIISN 504

Query: 715 AIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           A+ ++P GG++  + T      +++++ D G+G+    +++    F ++  ++     GT
Sbjct: 505 ALKYSPEGGKVRFNMTVEE-GYLLIQISDEGMGIPKENVDRIFDRFYRVDRARSREMGGT 563

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
           GLGL ++K M++A+ G  +  S   KGT I    P  +
Sbjct: 564 GLGLAISKEMINAHGGVIWAESKLGKGTSIFFTLPFEE 601


>gi|223938140|ref|ZP_03630037.1| multi-sensor signal transduction histidine kinase [bacterium
           Ellin514]
 gi|223893184|gb|EEF59648.1| multi-sensor signal transduction histidine kinase [bacterium
           Ellin514]
          Length = 740

 Score =  308 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 95/533 (17%), Positives = 185/533 (34%), Gaps = 46/533 (8%)

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYS---HGN--LFYANPSFLLLTKYKSVDDIEI 362
                A   E E    E  +      F+      G   +   NP+        S +    
Sbjct: 203 RRQTEASLRESEQRYREVFETTSDHIFLLDVLPDGRFCVDRWNPAAERAAGISSAELAGK 262

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
           A  L  L+   +           +          S  L         +           N
Sbjct: 263 A--LEELVPPGEARRITGNYNRCIAEKSPISYEESLTL------GGKNYDFHTTLIPVKN 314

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAV 481
              +     G+  +  + +    +++    +   ++E T   I   +   G I S   AV
Sbjct: 315 AEGQIRRIVGVAHDITERKRAVAELQESEDRYRIVVEQTGQMIYDYDVPSGEI-SWRGAV 373

Query: 482 SKLFGYPVED---ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
           +KL G+ +E+   +  + +   +             E +        +       K+   
Sbjct: 374 TKLTGFTLEEFQKVNIRRWEEMIHPADHEKAMTAFHEAMRT--ASDYDMEYRFRCKDGSY 431

Query: 539 LSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIA-----------EKESS 583
           + ++     LP +S         M DI+  K+ +  L  +               ++ + 
Sbjct: 432 IYVKDHGLFLPGASGKSLRLLGAMADITAHKEAEIALRRSHNELEARVQERTTALQRANK 491

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
               F   VSH++R PL A+ GF++ +  + +G        +    I      +  +V D
Sbjct: 492 ELEAFTYTVSHDLRAPLRAVDGFTD-LLQEEYGRGMPEDAQQLLASIKAGSQRMEHLVQD 550

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703
           LL++S+I+  +  +    V ++  V E     +     + I +R      +P  L D   
Sbjct: 551 LLNLSRID--RQPMAPRCVDMNRLVREVFEEQRGQQPSRDIELRVD---TLPDCLGDSSL 605

Query: 704 VKQIALNILSNAIHFTPSGGQ--IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761
           ++Q+ +N+LSNAI FT    +  I + +    +E V   +RD GVG       K    F 
Sbjct: 606 LRQVFVNLLSNAIKFTGPREKALIEVGSKTEGDENVYF-IRDNGVGFDMKYAGKLFGAFQ 664

Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           ++      +  GTG+GL + + ++  + G+ ++ S   +GT      P Y +S
Sbjct: 665 RLH--TAEQFPGTGIGLSIVQRIIHRHSGRIWVESAVDRGTTFYFTLPPYKSS 715


>gi|158339144|ref|YP_001520321.1| sensory transduction histidine kinase [Acaryochloris marina
           MBIC11017]
 gi|158309385|gb|ABW31002.1| sensory transduction histidine kinase, putative [Acaryochloris
           marina MBIC11017]
          Length = 551

 Score =  308 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 80/247 (32%), Positives = 138/247 (55%), Gaps = 2/247 (0%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +++Q   +L       E+ +  K +FL+ +SHE+RTPLTAIIG +EV++ + +G L NP+
Sbjct: 166 QYRQLSEQLVIVNAALERAAGLKDEFLSTMSHELRTPLTAIIGLAEVLREEVYGSL-NPK 224

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
            ++    I+ SG  +L  +NDL+D+SKIESG + L    VS+   V   +++V+  A ++
Sbjct: 225 QLKSVCTIEESGETLLTQLNDLIDLSKIESGNLVLERRRVSISALVESCLAMVRPQAQKQ 284

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
            I +      ++  +  D   ++Q+  N++SNA+ FTP GG + +       E+V +RV 
Sbjct: 285 NITLSHHIPTDLAEVTGDELRLRQVLQNLISNALKFTPQGGAVSVQ-ATADTEQVQVRVT 343

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG+G+   +L    +PF Q+ +S      GTGLGL L + ++  + G   + S    G+
Sbjct: 344 DTGIGIATADLANIFEPFVQLDSSWARPYPGTGLGLTLVQRLIHLHGGTVQVESEVGSGS 403

Query: 803 LIEIIFP 809
              +  P
Sbjct: 404 TFIVTLP 410


>gi|2801651|gb|AAB97416.1| putative sensor protein [Bradyrhizobium japonicum]
          Length = 873

 Score =  308 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 125/681 (18%), Positives = 238/681 (34%), Gaps = 31/681 (4%)

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA----LGKRLDKKFS 205
               G    + +  A            G +    +          A      K L  +  
Sbjct: 204 LRDRGDGFQLTLTTAHGHTLEAIGRAIGGQAIVRIRELSGLRRDLAETNLRYKALSDETE 263

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
            L             K +  +     P      + +S ++ +      L           
Sbjct: 264 MLRGFAAAAPWPIWAKGENGALTFANPAYVRATEAASFSDVHERHASSLLDSADRGAMER 323

Query: 266 ESSLPEQEDFHTINLNQYTKKQY-FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
                         +   + + Y    +   S      +      +LS+           
Sbjct: 324 GLKDAANFTSRLPIVIAASARIYDVRAVNVGSGSVGVAIDASEADALSSALVRMAEAHRR 383

Query: 325 TVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
           T+D+      V+     L + N S+  L              L          D++ +  
Sbjct: 384 TLDQLSSGVAVFDGHRRLAFYNDSYRRLWD------------LDRTFLDANPDDSSVLDQ 431

Query: 384 VMLYRSDRTCIAASA---RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
           +   R         A   +LH      E +    ++P  +A          G      D 
Sbjct: 432 LRAARKLPEQPDFRAWKAKLHEAYRAVEAAKDTWYLPDGRALSVVTTPNPEGGVTYLFDD 491

Query: 441 RINKRKMEIEVMQL----CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
                ++      +       L++ ++G+A+    G     N A  +++    + +  +P
Sbjct: 492 VTESLELARRFDGMIRVQRETLDSLAEGVAVFGSNGKAQLFNPAFVRMWKLSSDAMRDEP 551

Query: 497 FTVFLEQNTPSVMNHYL-TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555
               +E     + +  +    +   +     +  +    + K  S+   + +        
Sbjct: 552 HIQTVEGWCHQLFDDPVVWRQIREAVTSIESRADVPLKLDRKDGSVLDGMIRPLHDGATM 611

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
           LT  DI++ +  +  L    +  E     K DF+  VS+E+R+PLT IIGF+  + +   
Sbjct: 612 LTFQDITDTENVERALRERNEALEAADQMKVDFVHHVSYELRSPLTTIIGFAHFLSDPST 671

Query: 616 GPLGNPRYIEYANYIDRSGNLV-LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
           GPL  P+  EY +Y+ +S N + L + N++LD++ I++G M L   PV + + +  A   
Sbjct: 672 GPLT-PKQAEYLDYVTKSTNALALALTNNILDLATIDAGAMKLELGPVDVSKTIELAAEG 730

Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
           +Q      RI ++   A +I   + D + V Q+  N+L+NA+ F+P    + IS   T +
Sbjct: 731 IQDRLATDRIRLKVEIAPDIGSFIGDEKRVVQVLYNLLANAVGFSPQDSTVGISARRTEH 790

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
             V+  V D+G G+     +K    F     SQ  R  G GLGL L ++ V+ + GK  +
Sbjct: 791 -SVVFTVTDSGPGIPADMKDKVFNWFE--SRSQGSRHRGAGLGLSLVRSFVELHGGKVRV 847

Query: 795 FSTPAKGTLIEIIFPLYDTSH 815
            S   +GT++   FP    +H
Sbjct: 848 DSIVGRGTVVICDFPTDQAAH 868



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 46/383 (12%), Positives = 90/383 (23%), Gaps = 46/383 (12%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151
           +G L   +    +                 +         H   LL   +    +  L  
Sbjct: 282 NGALTFANPAYVRAT--------------EAASFSDVHERHASSLLDSADRGAMERGLKD 327

Query: 152 IEGTNLYVPIDLAALP-IYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
                  +PI +AA   IY       G    G+       +   +   R+ +      + 
Sbjct: 328 AANFTSRLPIVIAASARIYDVRAVNVGSGSVGVAIDASEADALSSALVRMAEAHRRTLDQ 387

Query: 211 KKGHSSVEK---------EKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
                +V           + Y               +  S L +  A +    + +    
Sbjct: 388 LSSGVAVFDGHRRLAFYNDSYRRLWDLDRTFLDANPDDSSVLDQLRAARKLPEQPDFRAW 447

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQ-YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
                 +    E           +      T       ++ +        L+  FD    
Sbjct: 448 KAKLHEAYRAVEAAKDTWYLPDGRALSVVTTPNPEGGVTYLFDDVTESLELARRFDGMIR 507

Query: 321 LTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIA------GGLSTLLDAP 373
           +  ET+D       V+ S+G     NP+F+ + K  S    +        G    L D P
Sbjct: 508 VQRETLDSLAEGVAVFGSNGKAQLFNPAFVRMWKLSSDAMRDEPHIQTVEGWCHQLFDDP 567

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
            +          +       +        +     + L     P                
Sbjct: 568 VVWRQIREAVTSIESRADVPL-------KLDRKDGSVLDGMIRPLHDGA-------TMLT 613

Query: 434 EPEDVDTRINKRKMEIEVMQLCS 456
             +  DT   +R +      L +
Sbjct: 614 FQDITDTENVERALRERNEALEA 636


>gi|17231253|ref|NP_487801.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17132895|dbj|BAB75460.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 1550

 Score =  308 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 109/755 (14%), Positives = 243/755 (32%), Gaps = 65/755 (8%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKRQNTWYG-- 145
            +D+ G +   ++      G    ++ G    ++      ++ +           T     
Sbjct: 416  LDSQGRIVRFNQACEVITGYSFDEVRGRHFWNLFLLPEDVESSKEFFAKFPADPTVPSVQ 475

Query: 146  KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI-VHVNRVDNDPRALGKRLDKKF 204
            ++  + +        I  +   + +         G GI +   +  +    +   + +  
Sbjct: 476  ESENYWVTKDGSRRLIAWSRTILQNHEGSVEYIIGTGIDITERKRADKHLTIQYAITRVL 535

Query: 205  SHLHEIKKGHSSVEKEKYDIFSQQSPP-PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
            +    I +    + +   +           +  +    S  + + H    ++  +     
Sbjct: 536  AESTTITEATPQILQAICETLGWNVCEIWMVNQQANFLSFFDLWHHTSLEMQEFRTQSQP 595

Query: 264  SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
               +S          +                  +    +  R          +      
Sbjct: 596  ITFASGIGLPGRIWASGQPIWLTDIVNDGSFLRNQLAAQVGLRGAFGFPIRSGQKILGVI 655

Query: 324  ETVDKCP---IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
                       P       ++      F  + + ++ ++++     S L           
Sbjct: 656  TCFSHQVQPHDPDLAKIMDSIGEQVGQF--IHRKQAEEELQRQNLRSQLFTEI------- 706

Query: 381  IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
               + + +S +        +  +Q   +    + +      +                  
Sbjct: 707  --TLKIRQSLQIEEILQITVKEVQKILQTDRVLIYQLLPDGSGSLIIEAVVAGWAAIKGQ 764

Query: 441  RINKRKMEIEVM--------QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
             I    ++ E          +L  +     + IA ++  G I  ++  + + FG      
Sbjct: 765  NITDFYLQTEYQQQYCLQQYRLRHL-----EAIANLDL-GEIQQSHLELLRKFGVKA--- 815

Query: 493  LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
                  + +           + +  +     + E   L    +                 
Sbjct: 816  ---NLVIPILVKDELCGLLIVHQCATSRQWTSFETHLLRQIAD--------------QVG 858

Query: 553  CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
                    +    +++ +L  A+  AE  S  KS FLA +SHEIRTP+ A++G + ++  
Sbjct: 859  IAVAQAQLLEVETRQRQELEVARSQAELASHAKSAFLANMSHEIRTPMNAVLGMTGLMLE 918

Query: 613  QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
                 L N    ++   I  SG+ +L ++N++LD+SK+E+G+M L     +L   V E +
Sbjct: 919  T----LLNQEQRDFMETIRISGDALLTLINEILDLSKLEAGEMALENLNFNLSTCVEEVL 974

Query: 673  SLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQI-IISTT 730
             L+   A+ K + I      ++P ++  D   ++QI +N++ NAI FT  G  +  +   
Sbjct: 975  DLLAPQAHSKGLEIAALIYRHVPIQLQGDASRLRQILMNLIGNAIKFTSFGEVVMRVELR 1034

Query: 731  HTSNEE--VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
              +     +   V D+G+G+T  +  K   PF Q+  S   +  GTGLGL + K +V   
Sbjct: 1035 SETPTTAIIHFAVTDSGLGITLEDQHKLFTPFTQVDASTTRKYGGTGLGLAICKQLVTLM 1094

Query: 789  MGKFYIFSTPAKGTLIEIIFPLYDTSHP----HDC 819
             G+  + S   KG+      P      P     DC
Sbjct: 1095 GGEIGVESQLGKGSKFWFEIPFAKQLQPVSFVEDC 1129



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/176 (13%), Positives = 55/176 (31%), Gaps = 6/176 (3%)

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
              E  +         +      +    I  E +  +  +  +  E   + ++L+  S  
Sbjct: 353 KASEQKVIFILAIAIVSGFIILAVVYYLIYCEVIARQSMENILNEERNFISAVLDTVSAL 412

Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL-EQNTPSVMNHYLTEILSLD-LR 522
           + +++ +G I+  N+A   + GY  +++  + F               +  +  +   + 
Sbjct: 413 VIVLDSQGRIVRFNQACEVITGYSFDEVRGRHFWNLFLLPEDVESSKEFFAKFPADPTVP 472

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHA 574
              E      TK+     +      L            T  DI+E K+    L+  
Sbjct: 473 SVQESENYWVTKDGSRRLIAWSRTILQNHEGSVEYIIGTGIDITERKRADKHLTIQ 528



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/373 (10%), Positives = 99/373 (26%), Gaps = 24/373 (6%)

Query: 179 RGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKN 238
           + F  +    VD   +     L    +           + +        Q+    ++   
Sbjct: 267 QKFDELRNATVDPVRQQRLVILKPLITAKITELNQTIKLRQ----NLGFQAALQVIQSDQ 322

Query: 239 KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE 298
             + + +      ++    K  L    +  L   +      +         G +      
Sbjct: 323 GQTLMDDIRKVMREMETENKVRL----QQQLQAVKASEQKVIFILAIAIVSGFIILAVVY 378

Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSV 357
              Y       S+    +E  N     +D       V    G +   N +  ++T Y   
Sbjct: 379 YLIYCEVIARQSMENILNEERNFISAVLDTVSALVIVLDSQGRIVRFNQACEVITGYSFD 438

Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
           +          L   P+  +++         +D T  +     +       +   + +  
Sbjct: 439 EV--RGRHFWNLFLLPEDVESSKEFFAKF-PADPTVPSVQESENYWVTKDGSRRLIAWSR 495

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
               N         G   +  + +   + + I+      + E+T+    I      IL  
Sbjct: 496 TILQNHEGSVEYIIGTGIDITERKRADKHLTIQYAITRVLAESTT----ITEATPQIL-- 549

Query: 478 NRAVSKLFGYPVEDIL----RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS- 532
            +A+ +  G+ V +I     +  F  F +    + +        S  +         G  
Sbjct: 550 -QAICETLGWNVCEIWMVNQQANFLSFFDLWHHTSLEMQEFRTQSQPITFASGIGLPGRI 608

Query: 533 TKEEKLLSLRIII 545
               + + L  I+
Sbjct: 609 WASGQPIWLTDIV 621


>gi|296133877|ref|YP_003641124.1| integral membrane sensor signal transduction histidine kinase
           [Thermincola sp. JR]
 gi|296032455|gb|ADG83223.1| integral membrane sensor signal transduction histidine kinase
           [Thermincola potens JR]
          Length = 534

 Score =  308 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 85/250 (34%), Positives = 140/250 (56%), Gaps = 2/250 (0%)

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           +    +K +++      EK +  K++FLA  SHE+RTPLTAII F+E++ ++  GPL N 
Sbjct: 279 TVLHNQKRQMAEINLQLEKANRLKNEFLANTSHELRTPLTAIIAFTELLLDEETGPLNN- 337

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
              +Y N I+ S   +L+ +N+LLD++KIE+GK  +H E VS+ +  S  +   +     
Sbjct: 338 MQRDYINEINESSQQLLNYINNLLDLAKIEAGKFEVHREAVSISDLCSSVLRKTEPIFKV 397

Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS-NEEVILR 740
           K+  +     +NIP +  D   + Q+ +N+LSNA  FTP  G+I +        ++VI+ 
Sbjct: 398 KKQQVIIDVEDNIPPVYVDPPKMMQVLINLLSNAHKFTPEDGRIELRARMNDRRDQVIVS 457

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V D GVG+++  LE   + F Q+ N  +   +GTGLGL L K +V+ + G+  + S   +
Sbjct: 458 VSDNGVGISSENLELIFEKFRQVNNRPEPLYQGTGLGLALVKHIVEMHGGQVKVESILGQ 517

Query: 801 GTLIEIIFPL 810
           G+      PL
Sbjct: 518 GSTFYFSIPL 527


>gi|217961049|ref|YP_002339617.1| sporulation kinase A [Bacillus cereus AH187]
 gi|229140259|ref|ZP_04268816.1| hypothetical protein bcere0013_33590 [Bacillus cereus BDRD-ST26]
 gi|217063190|gb|ACJ77440.1| sporulation kinase A [Bacillus cereus AH187]
 gi|228643192|gb|EEK99466.1| hypothetical protein bcere0013_33590 [Bacillus cereus BDRD-ST26]
          Length = 510

 Score =  308 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 104/535 (19%), Positives = 202/535 (37%), Gaps = 42/535 (7%)

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTK 353
           +S +   + +                +     +  P     +   G + + NPS   +  
Sbjct: 7   SSTQKKRHPNISRRLRNHIQDRSLTEMYASLFEHNPDGIISLNLEGIIIHTNPSAERILG 66

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
           Y S + +E     S L       + +  + V+    +         + +I       L +
Sbjct: 67  YTSSE-LERKSITSIL-------EAHISEQVLQNIKNTEADNQQEYILSIYHKDGFLLDV 118

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
                    Q         ++P +   RI ++K++    +L +++ +    +   + EG 
Sbjct: 119 VTKLVPIFVQNRLTGVYAIMKPLEKSERI-EKKLKESEKRLRTLVNSMPAFVIFKDHEGR 177

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN----HYLTEILSLDLRQTLEKIT 529
            L  N      F +       K  +  ++ N            + E+     RQ L    
Sbjct: 178 WLEANDYALSCFNFHHVPYHGKKDSELIQYNEAYREAFLHCEEVDELAWQ-QRQILHGEE 236

Query: 530 LGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
               +++  L L I    L           +   DI+E K+ +  L  ++K+A       
Sbjct: 237 FIIHRDDFDLILSISKVPLYHPDGSRKGLIVMGRDITELKETEKLLRKSEKLAVV----- 291

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
               A ++HEIR PLT++ GF  ++      P  N     Y + +    + +  I +  +
Sbjct: 292 GQLTAGIAHEIRNPLTSLKGFLTLLL-----PEINEEQKWYIDVMLSEISQMESITSQFM 346

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
            +SK +     L  +  ++   + E ++ +   A    + I     + +  I  D   +K
Sbjct: 347 AMSKPQ----VLAIQTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYVYDIQCDGNQLK 402

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           Q+ +NIL NAI   P+GG I I T       +++R+ D G G+    + +  +PF     
Sbjct: 403 QVFINILKNAIEAMPNGGNIFIQTKPLEGNFILIRIIDEGCGIPEDRISRLGEPFY---- 458

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820
              ++ +GTGLGL +   +++ + GK +I S   KGT+++I  PL   S PH  I
Sbjct: 459 --SLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTVVDIHLPL---SSPHLAI 508


>gi|108762821|ref|YP_628974.1| sensory box histidine kinase [Myxococcus xanthus DK 1622]
 gi|108466701|gb|ABF91886.1| sensory box histidine kinase [Myxococcus xanthus DK 1622]
          Length = 531

 Score =  308 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 85/542 (15%), Positives = 191/542 (35%), Gaps = 31/542 (5%)

Query: 285 KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFY 343
            +          + +          +               VD      +         +
Sbjct: 4   VRDTGEPPLQGRERAMAEREPGLD-AAGDVSPPARGGHDALVDNVDGIVWEADPSVRFIF 62

Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403
            +     L  Y     +                D+ A      + +   C+        +
Sbjct: 63  VSKQAERLLGYPVEQWLTEP----HFWLEHLHPDDRAWASTYCHTAVEQCLPHEFEYRML 118

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
             +         +     +         G+  +  +    + ++E  V  L + L++T+D
Sbjct: 119 AADGRVVWLRDIVTVLSKDGRAH--RLQGVMVDVTEQHQAQERLEQTVSLLEATLDSTAD 176

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE-QNTPSVMNHYLTEILSLDLR 522
           G+ +++R+G I + NR   +L+G           T+    +      + +L+ + SL   
Sbjct: 177 GLLVVDRDGHITACNRQFEQLWGLTGLAACTHDATLLAAVREKLKAPDAFLSRVQSLYEE 236

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPF-SSCYSLTMHDISEWKQEKNKLSHAKKIAEKE 581
            + E   +   +  ++L    + ++     +    +  D++E    +         A + 
Sbjct: 237 PSQESFDIIELRNGRILERYSLPQRRRGLITGRVWSFRDVTERVHAQRTQERLLAEAHEA 296

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
              + DFL+  +HE++TPLT +    E++K  R      P   E  +      + +  +V
Sbjct: 297 IRVRDDFLSIAAHELKTPLTPLRLHLELLK--RALAAREPIAPERVDKAMAQVDRLSALV 354

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701
           NDL+D + +E+G++ L  +PVSL E  +EA S  +  + E               ++ D 
Sbjct: 355 NDLVDATSVEAGRLKLQRKPVSLLEVANEACSEFRGLSAEH--AFMCELPQEDLLVMGDR 412

Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761
             + Q+  N+L NA+ ++P GG + +S +H      +L V D G+G++  E       F 
Sbjct: 413 GRLSQVLANLLENAVKYSPLGGTVRVSLSHVD-GNAVLSVADGGIGISREEQAHLFGRFF 471

Query: 762 QIPNS--------QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
           +  N+                     + + +++ + G  ++ S   +G+   +  P+   
Sbjct: 472 RASNAPVSGFGGLGLGLY--------ICRDIIERHGGHIWVDSELGRGSTFHVSLPVLTA 523

Query: 814 SH 815
           + 
Sbjct: 524 TA 525



 Score = 44.6 bits (104), Expect = 0.074,   Method: Composition-based stats.
 Identities = 34/390 (8%), Positives = 91/390 (23%), Gaps = 28/390 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMR--LCDVSDILHIDPNNHIGD-LLKRQNT 142
            W  D       +S++  + +G    + +       +          +      +++   
Sbjct: 51  VWEADPSVRFIFVSKQAERLLGYPVEQWLTEPHFWLEHLHPDDRAWASTYCHTAVEQCLP 110

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
              +  +   +G  +++   +  L    R     G     ++      +  +   ++   
Sbjct: 111 HEFEYRMLAADGRVVWLRDIVTVLSKDGRAHRLQG-----VMVDVTEQHQAQERLEQTVS 165

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
                 +       V      I          R   ++  LT   A   D          
Sbjct: 166 LLEATLDSTADGLLVVDRDGHI------TACNRQFEQLWGLTGLAACTHDATLLAAVREK 219

Query: 263 TSEESSL----------PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
                +           P QE F  I L      + +   Q         +      +  
Sbjct: 220 LKAPDAFLSRVQSLYEEPSQESFDIIELRNGRILERYSLPQRRRGLITGRVWSFRDVTER 279

Query: 313 AYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYK-SVDDIEIAGGLSTLLD 371
            +    +               V        A+     LT  +  ++ ++ A      + 
Sbjct: 280 VHAQRTQERLLAEAH---EAIRVRDDFLSIAAHELKTPLTPLRLHLELLKRALAAREPIA 336

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
             ++    A    +    +    A S     ++  R+    +       +     +    
Sbjct: 337 PERVDKAMAQVDRLSALVNDLVDATSVEAGRLKLQRKPVSLLEVANEACSEFRGLSAEHA 396

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
            +     +  +           L ++LE  
Sbjct: 397 FMCELPQEDLLVMGDRGRLSQVLANLLENA 426


>gi|311029534|ref|ZP_07707624.1| Signal transduction histidine kinase [Bacillus sp. m3-13]
          Length = 422

 Score =  308 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 81/378 (21%), Positives = 164/378 (43%), Gaps = 23/378 (6%)

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
           I     + R  ++ +     +   I     DGI + + +  I+  N   SK+ G   E++
Sbjct: 62  IFRNVSERRKMEKDLRESEQKFRKIFNNAMDGILLWDNKCNIIDANPNASKILGLSKEEL 121

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
           +      +++ +   V+     E    +         +    E     +    KK     
Sbjct: 122 MNNSLHWYIQHDQLKVIQSQWEECPESEELSGE----VCLEGERGAKIIEYSAKKNVIEG 177

Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
            +     +I+E ++ +N+L  +  +         +  A ++HEIR P+TA+ GF ++++N
Sbjct: 178 LHMTIFRNITEKREMENQLRKSDTLTVV-----GELAAGIAHEIRNPMTALKGFIQLLQN 232

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
                +G  +Y  Y + I      +  I+ + L ++K ++    + ++  +    + E +
Sbjct: 233 ----SMGEDQYAMYFDVITSELKRIESIITEFLVLAKPQA----ISYQRKNATVIMKETL 284

Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
            L+   A+ + +   TS    +P I  +   +KQ+ +NIL NAI   P GG + ++    
Sbjct: 285 DLLSAQASLENVQFITSIEEGLPDIYCEPNQLKQVFINILKNAIEVMPKGGTVSVALEKI 344

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
             E+V++ +RD G G+   +L+K  +PF         +  GTGLGL ++  +V+ + G  
Sbjct: 345 EGEQVLISIRDEGTGIPEDKLKKLGEPFYTT------KERGTGLGLMVSYKIVEEHNGTI 398

Query: 793 YIFSTPAKGTLIEIIFPL 810
            + S   KGT   I  P+
Sbjct: 399 EVSSKLGKGTTFHIKLPI 416


>gi|299145369|ref|ZP_07038437.1| two-component system sensor histidine kinase/response regulator,
           hybrid (one component system) [Bacteroides sp. 3_1_23]
 gi|298515860|gb|EFI39741.1| two-component system sensor histidine kinase/response regulator,
           hybrid (one component system) [Bacteroides sp. 3_1_23]
          Length = 808

 Score =  308 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 101/481 (20%), Positives = 178/481 (37%), Gaps = 32/481 (6%)

Query: 338 HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397
            G + +AN  FL        +DI      +    A  +    A                 
Sbjct: 202 DGTIIFANRRFLYNHGISENEDISQLKIYN---VAADMPTQEAWNERCKDVIHGGSSNFV 258

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
           A   +       +   T       +             +  +    + +++     + + 
Sbjct: 259 AHHPSKINRDILAYEGTMYNVTNDSGEESYWSFA---HDISERIRYEAQIKRLNQIMDTT 315

Query: 458 LEATSDGIAI--INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           +     GI +  IN +   +  NR           D + K    F              +
Sbjct: 316 INNLPAGIVVKEINNDFRYIYRNREAYNR-DLYKNDPVGKNDFDFYPPIVAEKKRQEDIQ 374

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNKL 571
           + +      +     G  +   L+ L     ++               D++E +  K +L
Sbjct: 375 VATSGK--GMHWTVEGKDRNGNLIILDKRKIRVDGDELSSPIIVSIEWDVTELEMMKREL 432

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
             +K+ AE   S KS FLA +SHEIRTPL AI+GFS +I               Y N ++
Sbjct: 433 LSSKEKAEMSDSLKSAFLANMSHEIRTPLNAIVGFSHLIAESD----DAEERKTYYNIVN 488

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA--ISLVQLYANEKRILIRTS 689
            +   +L ++N++LD+SKIESG +   F P SL     E     + +     + + +   
Sbjct: 489 ANNERLLQLINEILDLSKIESGTIEFSFGPASLHNLCREVHDAHIFRT---PQGVNLVYE 545

Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-SNEEVILRVRDTGVGM 748
            ++    I  D   V Q+  N++ NA+ FT  G    IS  +   + +++  V DTG G+
Sbjct: 546 SSDESLMIETDKNRVFQVISNLIGNAVKFTKEGS---ISYGYKLVDNQIVFHVTDTGTGI 602

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
              ++ +  + F ++ N      +GTGLGL + K++V+   GK  + S   KGT      
Sbjct: 603 EPEKVGRVFERFAKLNN----HAQGTGLGLSICKSIVERLGGKISVSSEFGKGTTFTFTL 658

Query: 809 P 809
           P
Sbjct: 659 P 659



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/283 (10%), Positives = 80/283 (28%), Gaps = 22/283 (7%)

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDI 360
           +Y       ++    ++             I  + Y+     +          Y  V   
Sbjct: 43  QYRDITQRSNVKRQLEQANLTLRAIQKVAQIGQWTYNTKQNIFH------YLGYTGVLCE 96

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA--MTFIPF 418
           E    L+       + + +    +     +   +   +  + ++ N E       T++  
Sbjct: 97  ENVQNLAIEKYVELIVEEDRQSFIEWCHVNEKELNMESISYRVRLNGEIFYMRIQTYLRE 156

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
           E+ +             +    R        ++  L   +    + I     +G I+  N
Sbjct: 157 ERPDGSFNIEGYIQNITDIQHRR-------NDINTLTHAINNAKESIFAARPDGTIIFAN 209

Query: 479 RAVSKLFGYPVEDILRK--PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
           R      G    + + +   + V  +  T    N    +++       +        ++ 
Sbjct: 210 RRFLYNHGISENEDISQLKIYNVAADMPTQEAWNERCKDVIHGGSSNFVAHHPSKINRD- 268

Query: 537 KLLSLRIIIKKLPFSSC---YSLTMHDISEWKQEKNKLSHAKK 576
            +L+    +  +   S    Y    HDISE  + + ++    +
Sbjct: 269 -ILAYEGTMYNVTNDSGEESYWSFAHDISERIRYEAQIKRLNQ 310


>gi|254412228|ref|ZP_05026003.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196181194|gb|EDX76183.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 423

 Score =  308 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 80/397 (20%), Positives = 159/397 (40%), Gaps = 16/397 (4%)

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
                    I+  + +     +  E E  +   + E   DG  I +  G I   N+A + 
Sbjct: 31  EELQAAVEEIQERNQEISAAHQATENERRKYQELFEFAPDGYFITDASGTIQDANQAAAT 90

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT------LEKITLGSTKEEK 537
           L       ++ KP  VF+   +       L ++  L            +       ++ +
Sbjct: 91  LLNIEKRRLIGKPLAVFIADTSKRTFLSQLNQLTHLSSPDFPTTLLYRDWEIFIKPRQSE 150

Query: 538 LLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
                I I  +             + D++   Q ++ L    +  ++ S  KS F+  VS
Sbjct: 151 PFPAEISISAILNPQSEIVGLRWLIRDMTYRHQAES-LRRELEAEKEFSELKSRFIQTVS 209

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HE RTPL  I   ++++     G L   +  +     D++   +  I++D+L  SK  + 
Sbjct: 210 HEFRTPLNMIYVSAQLLARSHDG-LTEEKCNQLLQRTDKAVRRITKILDDVLVFSKASAD 268

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713
           K+ L+   + L++     +   Q+ A   +  ++ +       +  D + + QI  N+LS
Sbjct: 269 KLELNPTLLDLEQFCQTLVEDYQVIAGSSK-TLQFNAPGTKHSVCLDEKLLYQILGNLLS 327

Query: 714 NAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
           NAI+++     I ++ T+  +  V  +++D G+G+   ++ +   PF +  N       G
Sbjct: 328 NAINYSQPNSTITLTLTY-PDHTVCFQIQDQGIGIPREDIPRLFDPFHRARN--VSNLPG 384

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           TGLGL + K  ++ + G   + S    GT   +  PL
Sbjct: 385 TGLGLSIVKKAIEIHGGTINVHSEVGIGTTFTVTLPL 421


>gi|298241538|ref|ZP_06965345.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297554592|gb|EFH88456.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 757

 Score =  308 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 115/766 (15%), Positives = 249/766 (32%), Gaps = 74/766 (9%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + ID    +   +      +G     ++G      +    +        +LK + T   
Sbjct: 29  LFVIDDDMTIVYANASAQTMLGTTQEALVGNSFWHSAPP--LVSTALYQAVLKARQTRKL 86

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
               +    T  +    ++           +G         N      +    + ++++ 
Sbjct: 87  TDVEYRSPATQTWFHAQIS----------PTGVGLAVFFQKNTEPTQCQDALCQSEQRYR 136

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
            L E      ++   +  I      P      ++ +V             +   +  L  
Sbjct: 137 DLLEHSAERVAMLTPEGLILEISQRPLADAQVLREEVIGKPLTAVPWWASVPHAQGQLCA 196

Query: 264 SEESSLPEQEDFHTINLNQYTKK----QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
           + E +   +       +  ++ +        T Q  + +  EYL           +   E
Sbjct: 197 AIEQARQGETVRFEARICPHSGRCLDLAVTLTPQCGTNQQVEYLICTGFDITR--YKRVE 254

Query: 320 NLTPETVDKCPIPFFV-YSHGNLFYANPS---FLLLTKYKSVDD---------------- 359
                 +D  P   +V    G++ Y+N     +  +   +  +D                
Sbjct: 255 EELHTVLDTLPQFVWVRQPDGSIAYSNRRSHDYARMMSERHPEDEWFPQLAPNDRQCIQG 314

Query: 360 -IEIAGGLSTLLDAPK-----LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
               A       D          ++      +  +               +         
Sbjct: 315 MWRTAPRTDITYDEAVSLQFVHPEDRERVLAIQRQGLEAGEPYEFEYRLRERQPGAYRWF 374

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
                   N+  + +   G   +    +  +  +     ++  ++ ++  GI     + +
Sbjct: 375 LSRGVPLRNEEGQIVQWFGTCTDIHKQKQTEDALRQSQERVNHLMNSSVIGIFFAEGD-V 433

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTV---FLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530
           ++  N    ++ GY   D+ ++  T     L     S+      E++        E   +
Sbjct: 434 VVEGNHTFLRMTGYSRNDLSQRRLTWGRLALLGLKTSLTQQAHQELVVQQYATPFETELV 493

Query: 531 GSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
              K+   L + +                + D S  K+ +                K  F
Sbjct: 494 C--KDGSRLDVLMGGVAFHGEVLQGIGFVL-DNSARKELE--------------RRKDTF 536

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
           ++  +HE+RTPLTAI   ++ +  +R    G        + ++    L+  +V DLLD++
Sbjct: 537 ISMANHELRTPLTAIKIQTQ-LLKKRLVRQGLHEAAAALSRVEEPLTLLERLVGDLLDVT 595

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIA 708
           +I++G++  H+EPV LD  + +  S  Q       I +R + +     +L D   + Q+ 
Sbjct: 596 RIQAGRLEYHWEPVDLDALLQDVTSTTQQMDPTHIIAVRGTISR---LLLGDKDRLAQVF 652

Query: 709 LNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
           LN++SNAI + P    I I  + ++     + VRD G+G+     EK  + F ++ N  Q
Sbjct: 653 LNLISNAIKYAPDALLIDIEASASAE-TATVVVRDHGIGIPKELCEKIFERFYRVSNPSQ 711

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           +   G G+GL +   +V  + G   + S   KG+   +  PL   S
Sbjct: 712 LMVPGLGMGLCIVTEIVKQHGGTITVDSEVGKGSTFHVTLPLTRES 757



 Score = 73.1 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/265 (13%), Positives = 77/265 (29%), Gaps = 22/265 (8%)

Query: 314 YFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                       ++  P   FV      + YAN S   +        +  +   S     
Sbjct: 10  LTQRRNETLLTLLETLPGALFVIDDDMTIVYANASAQTMLGTTQEALVGNSFWHSA---- 65

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
           P L      + V+  R  R       R          +    F         P  +    
Sbjct: 66  PPLVSTALYQAVLKARQTRKLTDVEYR--------SPATQTWFHAQIS----PTGVGLAV 113

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
              ++ +    +  +     +   +LE +++ +A++  EG+IL  ++          E++
Sbjct: 114 FFQKNTEPTQCQDALCQSEQRYRDLLEHSAERVAMLTPEGLILEISQRPLADAQVLREEV 173

Query: 493 LRKPFTVFLEQNTPSVMNHYL-TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK---- 547
           + KP T      +       L   I      +T+           + L L + +      
Sbjct: 174 IGKPLTAVPWWASVPHAQGQLCAAIEQARQGETVRFEARICPHSGRCLDLAVTLTPQCGT 233

Query: 548 LPFSSCYSLTMHDISEWKQEKNKLS 572
                    T  DI+ +K+ + +L 
Sbjct: 234 NQQVEYLICTGFDITRYKRVEEELH 258



 Score = 47.7 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/143 (11%), Positives = 46/143 (32%), Gaps = 12/143 (8%)

Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
              + +I+ +  I+  N +   + G   E ++   F         + +   + +      
Sbjct: 26  PGALFVIDDDMTIVYANASAQTMLGTTQEALVGNSFWHSAPPLVSTALYQAVLKARQTRK 85

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE 581
              +E     S   +     +I           ++     +E  Q ++ L  +++     
Sbjct: 86  LTDVEYR---SPATQTWFHAQISPT----GVGLAVFFQKNTEPTQCQDALCQSEQRYRDL 138

Query: 582 SSHKSDFLARVSHEIRTPLTAII 604
             H ++ +A +     TP   I+
Sbjct: 139 LEHSAERVAML-----TPEGLIL 156



 Score = 42.3 bits (98), Expect = 0.38,   Method: Composition-based stats.
 Identities = 15/202 (7%), Positives = 45/202 (22%), Gaps = 37/202 (18%)

Query: 85  FTWNIDAHGYLKEISEE---LPKTIGNYAFKM-------------IGMRLC--------- 119
           F W     G +   +       + +     +              I              
Sbjct: 267 FVWVRQPDGSIAYSNRRSHDYARMMSERHPEDEWFPQLAPNDRQCIQGMWRTAPRTDITY 326

Query: 120 ------DVSDILHIDPNNHIGDL-LKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172
                         +    I    L+    +  +  L   +    Y       +P+ +  
Sbjct: 327 DEAVSLQFVHPEDRERVLAIQRQGLEAGEPYEFEYRLRERQ-PGAYRWFLSRGVPLRNEE 385

Query: 173 REFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP 232
            +    + FG               ++  ++ +HL  +      +   + D+  + +   
Sbjct: 386 GQIV--QWFGTCTDIHKQKQTEDALRQSQERVNHL--MNSSVIGIFFAEGDVVVEGNHTF 441

Query: 233 HLRMKNKVSSLTEYYAHKDDVL 254
                   + L++       + 
Sbjct: 442 LRMTGYSRNDLSQRRLTWGRLA 463


>gi|149922270|ref|ZP_01910707.1| sensory box histidine kinase/response regulator [Plesiocystis
           pacifica SIR-1]
 gi|149816903|gb|EDM76389.1| sensory box histidine kinase/response regulator [Plesiocystis
           pacifica SIR-1]
          Length = 590

 Score =  308 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 93/496 (18%), Positives = 175/496 (35%), Gaps = 38/496 (7%)

Query: 321 LTPETVDKCPI-PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
           +    ++  P     + + G +  AN ++L        D        S  +         
Sbjct: 1   MADPLLEAMPNRAALLDAEGLVIAANRNWLSPPDCDPPDAPPRRPIGSHYVAELSPRGPG 60

Query: 380 AIK----PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
                    +L   D         L           A+                    E 
Sbjct: 61  DEVGSFVAGVLAVLDGRRSRFEYELSRDGPRGRCWYAVQVSGV-----AGTQRRVLVTEE 115

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
           +    R  +  +     QL +I+      +  ++ +GI+   +   +   G   E ++ +
Sbjct: 116 DVTSRRRAQEALSASENQLRTIITGAPIVLFSVDPDGILSLFDGLGASGLGVSPERVVGR 175

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS-LRIIIKKLPFSS-- 552
                        M   + + ++ +         + S    ++   LR            
Sbjct: 176 SVFEVFAH--VPQMLTAVRKAMAGETA-------VTSAPIGRMTWELRCSPAVAGDERLE 226

Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
                  DI+E  + +                K++F++ VSHE+RTPLT+I G   +++ 
Sbjct: 227 GVVGIATDITERARIE--------------RLKNEFVSIVSHELRTPLTSIRGSLGLLEG 272

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
              G L   R          +   ++ +VND+LD+ KIE+GK+ L  E +       +AI
Sbjct: 273 GVAGELDI-RIKGLVRIALSNTERLIRLVNDILDLDKIETGKLELRSEVLDPIRLTEDAI 331

Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
           + +  YA E  + +   F +    +  D   + Q+ +N+LSNAI F+  G  + +     
Sbjct: 332 AEISGYATESGVSLVREFESAC-DVRGDRDRLLQVLINLLSNAIKFSKPGDTVTVEIEEI 390

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
           S   V   V D G G+   ++ K  + F Q+  S      G+GLGL ++KA++DA+ G  
Sbjct: 391 SPGTVRFSVCDEGPGIAEDQMPKLFRKFSQLDESATRSAGGSGLGLAISKAIIDAHGGGI 450

Query: 793 YIFSTPAKGTLIEIIF 808
            + S    G+      
Sbjct: 451 GVESQLGVGSRFHFAL 466


>gi|78222301|ref|YP_384048.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter
           metallireducens GS-15]
 gi|78193556|gb|ABB31323.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter
           metallireducens GS-15]
          Length = 986

 Score =  308 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 110/762 (14%), Positives = 237/762 (31%), Gaps = 60/762 (7%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT--- 148
            G + + +E+L +  G+   ++IG      S  L  D            NT  G      
Sbjct: 234 DGVIFDCNEQLCRLFGSSRNEIIGRSPVHFSPELQSDGTPSAEKARHMLNTTLGGEAGIF 293

Query: 149 ---LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
                  +GT +   + L AL I  R           +V             + +  +  
Sbjct: 294 PWQHRRQDGTLVDTEVSLKALTIQGRT------VLQAVVRDVTEWEKAEESLRMIRLQQQ 347

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHL---RMKNKVSSLTEYYAHKD-DVLKTEKYPL 261
            + +       ++  +    +  +           + V          D   L  E    
Sbjct: 348 AILDNIPDLVWLKDIESRFITVNAAFAQACGTLPADLVGKTDLDIWPSDLATLYREDDAR 407

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
           + +    +  +E    +N      +     + + +             S     +     
Sbjct: 408 VIASGKQVRTEEPLADVNGKGVWIETIKMPIYDEAGTVIGTTGIARDISERREAELKLRE 467

Query: 322 TPETVDKCP----IPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
               + +      +  + +    N    +   L + +                       
Sbjct: 468 NEARLARAQQIAHVGNWEWDILNNSVQFSDELLRIFRIPP----GQPNMTYETFLEAVHP 523

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           D+       +  +             I  + E    +      + +     +   G+  +
Sbjct: 524 DDRQAVNDTINATLHEQAPYGKTYRIICPDGEIRH-LRAEGEVEFDAEGAPVRMQGVVKD 582

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILRK 495
              + + +  +     +   I E   D I ++ RE   I+  NRA   L G   E +   
Sbjct: 583 ITVSTLAEEALRESEARFREIFEQNEDAIILMARETLDIIDANRAAETLIGRDKESLNWL 642

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555
               F+  +  +     +  +             + S     + S+   I +L  +    
Sbjct: 643 GPWSFIVPDDYNPFIAAIPPVDDTTPFHLNRIGVVRSDGTRLISSIWGKIIRLRDTEVVY 702

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSH--KSDFLARVSHEIRTPLTAIIGFSE----- 608
            ++ D+++  + + +           +        ++ ++HEI  P T I G +      
Sbjct: 703 CSIRDLTQRIRMEEEAQITHAHLIHTNKMASLGVLVSGIAHEINNPNTFIQGNASLIESF 762

Query: 609 -----VIKNQRFGPLGN-----------PR-YIEYANYIDRSGNLVLDIVNDLLDISKIE 651
                 I ++     G+            R +    + +      +  IVN+L D ++ +
Sbjct: 763 WRDTVPILDRHRTENGDFILGGLPVAEVERIFPRLLHGVKEGSRRISAIVNNLKDFARED 822

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
           + K    F P++++  V  A  ++    +      R   A  +P      + ++Q+ +N+
Sbjct: 823 TAK---AFVPIAVNNIVENAKMILSYQIHRYTDHFRMELAEGLPLARGKFQQIEQVVINL 879

Query: 712 LSNAIHFTP-SGGQIIISTTHTSNEEVI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
           + NA+   P     + +ST+      V+ + VRD G GM    LE+  +PF     S ++
Sbjct: 880 IMNALQALPGKDAGVTVSTSADPVASVVTISVRDEGEGMQWEVLERITEPFF----STKL 935

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
              GTGLGL ++ A++  + G     STP KGT   +  PL 
Sbjct: 936 EQGGTGLGLSISAAIIREHDGTLTFESTPGKGTTATVTLPLA 977



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/398 (10%), Positives = 93/398 (23%), Gaps = 30/398 (7%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTW 143
             W  D       ++    +  G     ++G    D+               ++      
Sbjct: 356 LVWLKDIESRFITVNAAFAQACGTLPADLVGKTDLDIWPSDLATLYREDDARVIASGKQV 415

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +  L  + G    V I+   +PIY       G  G  I        +     +  + +
Sbjct: 416 RTEEPLADVNGKG--VWIETIKMPIYDEAGTVIGTTG--IARDISERREAELKLRENEAR 471

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS--------LTEYYAHKDDVLK 255
            +   +I   H    +      S Q     LR+                E     D    
Sbjct: 472 LARAQQI--AHVGNWEWDILNNSVQFSDELLRIFRIPPGQPNMTYETFLEAVHPDDRQAV 529

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS----L 311
            +       E++   +       +      +       +               +     
Sbjct: 530 NDTINATLHEQAPYGKTYRIICPDGEIRHLRAEGEVEFDAEGAPVRMQGVVKDITVSTLA 589

Query: 312 SAYFDEGENLTPETVDKCPIPF--FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
                E E    E  ++             ++  AN +   L   +  + +   G  S +
Sbjct: 590 EEALRESEARFREIFEQNEDAIILMARETLDIIDANRAAETLIG-RDKESLNWLGPWSFI 648

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
           +         AI PV                  +  +    L  +        +  E + 
Sbjct: 649 VPDDYNPFIAAIPPV------DDTTPFHLNRIGVVRSDGTRLISSIWGKIIRLRDTEVVY 702

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
            +    +       + + +I    L    +  S G+ +
Sbjct: 703 CS--IRDLTQRIRMEEEAQITHAHLIHTNKMASLGVLV 738



 Score = 78.5 bits (192), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 24/200 (12%), Positives = 62/200 (31%), Gaps = 8/200 (4%)

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
           +  S    I                          A                 D + +  
Sbjct: 152 IRNSRGEIIGVLYVGARKNEFHSRYEHYKVNVIAGAAVISTIFTVLAFVV-LRDRKRHLE 210

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK---PFTVFLE 502
            ++    +  ++ E++S+GI + +  G+I   N  + +LFG    +I+ +    F+  L+
Sbjct: 211 ALQDNETKYRTLFESSSEGILLFD--GVIFDCNEQLCRLFGSSRNEIIGRSPVHFSPELQ 268

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS--LTMHD 560
            +           + +    +          ++  L+   + +K L           + D
Sbjct: 269 SDGTPSAEKARHMLNTTLGGEAGIFPWQHRRQDGTLVDTEVSLKALTIQGRTVLQAVVRD 328

Query: 561 ISEWKQEKNKLSHAKKIAEK 580
           ++EW++ +  L   +   + 
Sbjct: 329 VTEWEKAEESLRMIRLQQQA 348


>gi|332074557|gb|EGI85031.1| sensory box protein [Streptococcus pneumoniae GA17545]
          Length = 449

 Score =  308 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 85/376 (22%), Positives = 166/376 (44%), Gaps = 33/376 (8%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           R+ +  +E E  +L SIL   +DG+   NR G I+  N    K  G   ED+L +     
Sbjct: 83  RLTQENLEQESKRLNSILFYMTDGVLATNRRGQIIMINDTAKKQLGLVKEDVLNRSILEL 142

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SL 556
           L+      +   +         Q+ E +        + L+LR+    +   S +      
Sbjct: 143 LKIEENYELRDLI--------TQSPELLLDSQDINGEYLNLRVRFALIRRESGFISGLVA 194

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            +HD ++ ++E+ +              +  F++ V HE+RTPLT++  + E +      
Sbjct: 195 VLHDTTDQEKEERE--------------RRLFVSNVGHELRTPLTSVKSYLEALDEGALC 240

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV- 675
               P   ++        N ++ +V DLL +S+I++   +L  E ++    ++  ++   
Sbjct: 241 ETVAP---DFIKVSLDETNRMMRMVTDLLHLSRIDNATSHLDVELINFTAFITFILNRFD 297

Query: 676 --QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
             +    EK+  +   +  N   +  D   + Q+  NIL+NAI ++P GG+I +    T 
Sbjct: 298 KMKGQEKEKKYELVRDYPINSIWMEIDTDKMTQVVDNILNNAIKYSPDGGKITVRMKTTE 357

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
           ++ + L + D G+G+   +L +    F ++  ++     GTGLGL +AK ++  + G  +
Sbjct: 358 DQMI-LSISDHGLGIPKQDLPRIFDRFYRVDRARSRAQGGTGLGLSIAKEIIKQHKGFIW 416

Query: 794 IFSTPAKGTLIEIIFP 809
             S   KG+   I+ P
Sbjct: 417 AKSEYGKGSTFTIVLP 432


>gi|260223386|emb|CBA33901.1| hypothetical protein Csp_B21350 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 813

 Score =  308 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 113/648 (17%), Positives = 228/648 (35%), Gaps = 49/648 (7%)

Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH--LRMKNKV 240
           +  +    N           +   +            E   + +          R ++++
Sbjct: 198 VGQLQAAINQASRGMALQVNRVQAIVNTAAEAIIGLDEFGRVTTTNPAASSMFGRSEDEL 257

Query: 241 SSLT----EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS 296
              T        ++  + +     +      S   + DF     +           +  +
Sbjct: 258 LGQTIECCVPGLNEQALHEMFGQGMEHILSISRVTRHDFMGTRADGTLFPVEICLGEVKN 317

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN----LFYANPSFLLLT 352
            ++  Y       +      E   L    +       F+ +       + Y N +F    
Sbjct: 318 DKTLRYACIVRDLTDERAAQETSELYERALASSHNAVFITNGKMEHQPIVYINDAFQKFV 377

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
                D +  +      L   K +D+  ++ + L   +      +      +        
Sbjct: 378 NLPRWDILGESLA----LLRGKNADDPGVRELTLAVREHRNANVTIHR---ELENGEVQI 430

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG 472
                    +         GI  +       +  M     QL +I   + DG  + +   
Sbjct: 431 AEVSLSPVMSDKGTLTHFVGIVSDITARVRAEEAMAERRAQLDAIFSLSPDGFVMFDAHD 490

Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQN-TPSVMNHYLTEILSLDLRQTLEKITLG 531
            ++  N A  ++ G           + F +Q  +    +  L  +       + E+    
Sbjct: 491 QLVFANPAFERMTGLGKHASTPVSLSQFEQQLLSLCDESQALPTMRGDQPDASWEEKLQL 550

Query: 532 STKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
           +  + +++  R   +         L   D++   Q                  KS+FL  
Sbjct: 551 ARPQRRVVQAR-SRRNEAGRRETILYFRDVTHEDQV--------------DRMKSEFLTA 595

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
            +HE+RTP+ +I GFSE++  ++F P    R  +    I R   L++ ++N+LLD+++IE
Sbjct: 596 AAHELRTPMVSIFGFSELLTRRKFTP---ERQTDMLQTIHRQSGLLVKMLNELLDLARIE 652

Query: 652 S-GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP--RILADLRSVKQIA 708
           S G +++      LDE V   I  + L   ++ +       + +P  ++L D   ++Q  
Sbjct: 653 SRGGLDMQINAHPLDETVQYCIKGLMLKDTDRPV-----LHDTLPSLQVLMDPEKMQQAL 707

Query: 709 LNILSNAIHFTPSGGQIIISTTHTSNEEVI---LRVRDTGVGMTNYELEKAMKPFGQIPN 765
            N+L+NA  ++P GG + +S     +E V    + VRD G+GMT  +LE+A + F +   
Sbjct: 708 TNLLANAFKYSPQGGDVSLSVRTEEDEGVRYAVIDVRDQGIGMTPEQLERAFERFYRADA 767

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
           S      GTGLGL L K + + + G+  + ST  +GT   +  PL + 
Sbjct: 768 SGN--IPGTGLGLSLVKEIAELHKGRATMQSTFGEGTTASLWIPLAEA 813



 Score = 83.9 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 20/173 (11%), Positives = 64/173 (36%), Gaps = 4/173 (2%)

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
           IP    ++         +           R M ++V ++ +I+   ++ I  ++  G + 
Sbjct: 181 IPLRMGDEVNLPKASVEVGQLQAAINQASRGMALQVNRVQAIVNTAAEAIIGLDEFGRVT 240

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL--DLRQTLEKITLGST 533
           +TN A S +FG   +++L +     +       ++    + +     + +      +G+ 
Sbjct: 241 TTNPAASSMFGRSEDELLGQTIECCVPGLNEQALHEMFGQGMEHILSISRVTRHDFMGTR 300

Query: 534 KEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
            +  L  + I + ++       Y+  + D+++ +  +      ++      + 
Sbjct: 301 ADGTLFPVEICLGEVKNDKTLRYACIVRDLTDERAAQETSELYERALASSHNA 353



 Score = 67.7 bits (164), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 39/381 (10%), Positives = 100/381 (26%), Gaps = 24/381 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147
           +D  G +   +       G    +++G  +      L+    +   G  ++   +    T
Sbjct: 233 LDEFGRVTTTNPAASSMFGRSEDELLGQTIECCVPGLNEQALHEMFGQGMEHILSISRVT 292

Query: 148 TL----WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                    +GT   V I L         +     R   IV     +   +   +  ++ 
Sbjct: 293 RHDFMGTRADGTLFPVEICL------GEVKNDKTLRYACIVRDLTDERAAQETSELYERA 346

Query: 204 FSHLHEIKKGH-SSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
            +  H         +E +     +          +  +   +       +        L 
Sbjct: 347 LASSHNAVFITNGKMEHQPIVYINDAFQKFVNLPRWDILGESLALLRGKNADDPGVRELT 406

Query: 263 TSEESSLPEQEDFHT--INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD---- 316
            +           H    N      +     + ++      ++   +  +     +    
Sbjct: 407 LAVREHRNANVTIHRELENGEVQIAEVSLSPVMSDKGTLTHFVGIVSDITARVRAEEAMA 466

Query: 317 EGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
           E            P  F ++     L +ANP+F  +T               +  +   L
Sbjct: 467 ERRAQLDAIFSLSPDGFVMFDAHDQLVFANPAFERMTGLGKHA---STPVSLSQFEQQLL 523

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
           S  +  + +   R D+   +   +L   +   +  +        +A +    +    +  
Sbjct: 524 SLCDESQALPTMRGDQPDASWEEKLQLARP--QRRVVQARSRRNEAGRRETILYFRDVTH 581

Query: 436 EDVDTRINKRKMEIEVMQLCS 456
           ED   R+    +     +L +
Sbjct: 582 EDQVDRMKSEFLTAAAHELRT 602


>gi|73661331|ref|YP_300112.1| two-component sensor histidine kinase [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
 gi|123734265|sp|Q4A159|WALK_STAS1 RecName: Full=Sensor protein kinase walK
 gi|72493846|dbj|BAE17167.1| two-component sensor histidine kinase [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
          Length = 610

 Score =  308 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 78/387 (20%), Positives = 172/387 (44%), Gaps = 27/387 (6%)

Query: 426 ENMPQNGIEPEDVDTRINKRKM--EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           + + +  +   ++  R+ + +   E E  +L S++   SDGI   +R G +   N     
Sbjct: 236 DEIGELALAFNNLSKRVQEAQANTESEKRRLDSVITHMSDGIIATDRRGRVRIVNDMALT 295

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           + G   EDI+       L+      ++       S  L     +  +        ++   
Sbjct: 296 MMGTMKEDIIGDHMLKVLKLEEDFSLDEIQENNDSFLLDINENEGIIAR------VNFST 349

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
           I+++  F + Y   +HD++E +Q + +              + +F+A VSHE+RTPLT++
Sbjct: 350 IVQETGFVTGYIAVLHDVTEQQQVERE--------------RREFVANVSHELRTPLTSM 395

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
             + E +++  +         ++ +        ++ +VNDLL +SK+++    +  E V 
Sbjct: 396 NSYIEALESGAW--KDGELAPQFLSVTREETERMIRLVNDLLQLSKMDNESEQITKEIVD 453

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
            +  +++ I+  ++ A  K                 D   + Q+  N+++NA+ ++    
Sbjct: 454 FNMFINKIINRHEMSA--KDTTFVREVPTETIFTEIDPDKMTQVFDNVITNAMKYSRGDK 511

Query: 724 QIIISTTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
           ++       +    + +RV+D G+G+   +++K    F ++  ++  +  GTGLGL ++K
Sbjct: 512 RVEFHVKQNALYNRMTIRVKDNGIGIPINKVDKIFDRFYRVDKARTRKMGGTGLGLAISK 571

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFP 809
            +V+A+ G+ +  S   +GT I I  P
Sbjct: 572 EIVEAHNGRIWANSVEGQGTSIFITLP 598


>gi|2460283|gb|AAB71889.1| hybrid histidine kinase DHKB [Dictyostelium discoideum]
          Length = 1969

 Score =  308 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 95/378 (25%), Positives = 171/378 (45%), Gaps = 26/378 (6%)

Query: 445  RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            +++E +  ++ S+   +++ + +  ++G+I   N A   +F   ++D+L  P    + + 
Sbjct: 821  KEIERKESRIQSLFRISNEALVVH-KDGLITDANPAFESMFQIKLQDLLY-PIQSGIWE- 877

Query: 505  TPSVMNHYLTEILSLDLRQTLE------KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM 558
                    L  +      +  +        T G     +   + +   K  +       +
Sbjct: 878  ----FLPALEGMFEPGASKLFDNPDMGVIETTGIDSSGRTFQVEVRTNKATYDGEPVDVI 933

Query: 559  --HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
               DI+  KQ   +  +A + AE  +  K  FL  VSHE+RTP+  ++  +++++     
Sbjct: 934  SIIDITGRKQL-MEADYALRKAEAANEAKVIFLTTVSHELRTPINGVLASADILERTTL- 991

Query: 617  PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
               +    E+ N I  SGN +LD++ND+LD SKIE+GKM +     S+ + +  +I +V 
Sbjct: 992  ---DSTQKEFLNCIKLSGNYLLDLINDILDYSKIEAGKMEIIKYDFSILKMLDNSIRIVS 1048

Query: 677  LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
                EK + +      N+P I+  D R +KQI LN LSN+I FT  G QIII     +++
Sbjct: 1049 KNIYEKGLDLFIFIDPNVPVIVNGDQRRIKQILLNFLSNSIKFTNHG-QIIIRVKLVTDD 1107

Query: 736  E----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
                 +   V D+G+G+    L      F QI +    +  GTGLGL ++K +     G 
Sbjct: 1108 STHSLIKFDVEDSGIGIKTEHLNPLFASFSQIDSGNSRKYRGTGLGLSISKRLCKMMGGD 1167

Query: 792  FYIFSTPAKGTLIEIIFP 809
              + S    G+      P
Sbjct: 1168 VKVKSEFGVGSTFSFTIP 1185


>gi|288960868|ref|YP_003451207.1| sensor protein [Azospirillum sp. B510]
 gi|288913176|dbj|BAI74663.1| sensor protein [Azospirillum sp. B510]
          Length = 542

 Score =  308 bits (789), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 97/524 (18%), Positives = 199/524 (37%), Gaps = 39/524 (7%)

Query: 318 GENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
             +     +D  P     +   G +   NP+   L  + + + +     +  L+  P   
Sbjct: 20  ALSQLQAMLDTVPDGIVIIDDRGRIRSFNPACERLFGWTAAEVVGRN--VRMLMPPPYRE 77

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           ++           +R  I     +   + +         +   K +  P      GI  +
Sbjct: 78  EHGGYLERYHRTGERRIIGIGREVTGQRKDGSCFPMDLSVGEAKQDGAPV---YIGIIRD 134

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
              +R  +  +     +L SIL+   + I +I+  G+I S + A  +LFGY   ++  + 
Sbjct: 135 LTASRQAEAALREREARLTSILQTVPEAIIVIDETGLIESFSPAAERLFGYAAAEVAGRN 194

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQT--LEKITLGSTKEEKLLSLRIIIKK--LPFSS 552
            ++ +        + YL        R+   + ++  G  ++  +  + + + +  L    
Sbjct: 195 ISMLMPSPYREQHDGYLERYQRTGERRIIGIGRVVSGQRRDGSVFPMELAVGEVLLGGRR 254

Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESS--HKSDFLARVSHEIRTPLTAIIGFSEVI 610
           C++  + D++E +  + +L   +      S         + ++HE+  PLTA+I +++  
Sbjct: 255 CFTGFVRDLTERQATERRLQELQSELLHVSRVSAMGQMASTLAHELNQPLTAVINYAKAA 314

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS-LDEAVS 669
           K     P    + I+  +           I+  L     IE GK       V  L++ V 
Sbjct: 315 KRLMERPETVAKAIDMVDKASAQATRAGQIIRHLRSF--IEKGK---THRSVDSLNKVVE 369

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS-------- 721
           EA +L  + A E+ + +R       P+++ D   V+Q+ LN++ NAI             
Sbjct: 370 EASALALVGAKERGLHVRFDLDATDPQVMIDKVQVQQVILNLVRNAIESMAGAGAAGPGV 429

Query: 722 GGQIIISTTHTSNEEV--ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
              + I T     E     + V D+G G+      +  +PF         +  G GLGL 
Sbjct: 430 QRVLTIRTGPEPGEAAFRRVLVGDSGPGVPEEVRAQLFQPFVTT------KAGGMGLGLS 483

Query: 780 LAKAMVDANMGKFYIFSTPAK---GTLIEIIFPLYDTSHPHDCI 820
           + +++++A+ G+ ++   PA    G       PL D   P D +
Sbjct: 484 ICRSIIEAHGGRLWLEPPPAPPATGASFVFTVPLADP--PADAV 525



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/257 (8%), Positives = 61/257 (23%), Gaps = 27/257 (10%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G ++  +    +  G  A +++G  +  +    + + +    +   R         
Sbjct: 38  IDDRGRIRSFNPACERLFGWTAAEVVGRNVRMLMPPPYREEHGGYLERYHRTGERRIIGI 97

Query: 149 LWPIEG---TNLYVPIDLA-------ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
              + G        P+DL+         P+Y            GI+          A  +
Sbjct: 98  GREVTGQRKDGSCFPMDLSVGEAKQDGAPVY-----------IGIIRDLTASRQAEAALR 146

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP------PHLRMKNKVSSLTEYYAHKDD 252
             + + + + +       V  E   I S               +  +  S+     +++ 
Sbjct: 147 EREARLTSILQTVPEAIIVIDETGLIESFSPAAERLFGYAAAEVAGRNISMLMPSPYREQ 206

Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
                +    T E   +           +           +        +       +  
Sbjct: 207 HDGYLERYQRTGERRIIGIGRVVSGQRRDGSVFPMELAVGEVLLGGRRCFTGFVRDLTER 266

Query: 313 AYFDEGENLTPETVDKC 329
              +         +   
Sbjct: 267 QATERRLQELQSELLHV 283


>gi|269102668|ref|ZP_06155365.1| hypothetical protein VDA_002094 [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268162566|gb|EEZ41062.1| hypothetical protein VDA_002094 [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 693

 Score =  308 bits (789), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 92/422 (21%), Positives = 167/422 (39%), Gaps = 20/422 (4%)

Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR--KMEIEVM 452
           +  A L  +   +           ++     E    +    E + + +  R  ++     
Sbjct: 142 SGDALLIFLHSEKGQFTPKCRRVLDRLRPLVERAIIDIDYRERLQSLVTARTQELIHSQQ 201

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
           +     +   D    I+        +             I +              +   
Sbjct: 202 RFKDFAKTVGDWFWEIDTAFNFTYISSP-----QLAGHMIDQTNILDIFR--DQPELKQK 254

Query: 513 LTEILSLDLRQTLEKITLGSTKEEK-LLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKN 569
           L E          +        E    ++               Y  T  +I+  K+   
Sbjct: 255 LKEKCEQQEP-FEDFEWQLPESEGGLWITFTGTPYFDKNDHFLGYRGTSKNITARKKRLF 313

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
            L  A+K AE  +S KS FLA +SHEIRTPL A++G  + + +           +E+   
Sbjct: 314 DLQEARKQAESANSAKSQFLAMMSHEIRTPLNAVLGLMDTLADSGL----RQEQMEWVKQ 369

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           +D+S  L+L I+ND+LD+SKIESG   L    +S+ + ++  ++ +   A  K IL++  
Sbjct: 370 MDQSAQLLLTIINDILDLSKIESGNFELTNGEMSITDCINLVVNQLSEQARNKNILLQAE 429

Query: 690 FANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748
               +P ++  D   + QI  N++ NAI FT +G   +++     N  + + V DTG+G+
Sbjct: 430 IDQTVPSVICGDKNRIAQIMFNLIGNAIKFTSTGSVRVLARRVEDN--IEISVIDTGIGI 487

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
                     PF Q  +S   +  GTGLGL ++K ++    GK  + S+   G+  ++I 
Sbjct: 488 AKQAQNNLFHPFHQADSSITRKYGGTGLGLAISKHLISKMNGKIELDSSLGIGSCFKVIL 547

Query: 809 PL 810
           P+
Sbjct: 548 PI 549



 Score = 45.8 bits (107), Expect = 0.029,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 43/162 (26%), Gaps = 10/162 (6%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK 146
           W ID       IS   P+  G     MI     ++ DI    P        K +     +
Sbjct: 215 WEIDTAFNFTYISS--PQLAG----HMIDQT--NILDIFRDQPELKQKLKEKCEQQEPFE 266

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
              W +  +   + I     P + +N  F G+RG                 +   K+   
Sbjct: 267 DFEWQLPESEGGLWITFTGTPYFDKNDHFLGYRG--TSKNITARKKRLFDLQEARKQAES 324

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA 248
            +  K    ++   +              + +      +   
Sbjct: 325 ANSAKSQFLAMMSHEIRTPLNAVLGLMDTLADSGLRQEQMEW 366


>gi|332653702|ref|ZP_08419446.1| sensory box histidine kinase [Ruminococcaceae bacterium D16]
 gi|332516788|gb|EGJ46393.1| sensory box histidine kinase [Ruminococcaceae bacterium D16]
          Length = 589

 Score =  308 bits (789), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 89/373 (23%), Positives = 166/373 (44%), Gaps = 33/373 (8%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG--YPVEDILRKPFTVFLE 502
           R++E E  +L ++    +DG+   +R G ++ +N A  ++ G     E    + F   L 
Sbjct: 247 RQVENERNKLDTLFLHMTDGVVAFSRNGEVIHSNPAAEEMLGRTITAEATYEELFGDLLS 306

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
                    YL E                     + L L +            + +HD++
Sbjct: 307 LEQVLQAPDYLEEERWEGE---------------RFLQLLLAPFDRDRQGGVLVVLHDVT 351

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           + ++ ++               + +F+A VSHE+RTPLT I  ++E + +   G L    
Sbjct: 352 QQRKTQD--------------MQREFVANVSHELRTPLTNIRSYAETLSDSA-GELPPAT 396

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             ++   I    + +  IV DLL +S+ +SGK  LH      D AV +  + V + A   
Sbjct: 397 EKKFLGVILNESDRMTHIVQDLLTLSRFDSGKDELHLVRFPFDVAVQDLYNAVYMEAQRH 456

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
              ++     ++P ++AD   V Q+ +NI+SN+I +TP+GG I++S      + V ++V 
Sbjct: 457 DHKMKLRLEPDLPAVVADRERVLQVMMNIVSNSIKYTPNGGHILVSAG-REGDRVWMQVD 515

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G+G+   +  +  + F ++  ++  +  GTGLGL +AK +VD + G   +      G 
Sbjct: 516 DDGIGIPPKDRPRIFERFYRVDKARSRQSGGTGLGLSIAKEIVDRHEGVLELVDREGPGL 575

Query: 803 LIEIIFPLYDTSH 815
            + +   +   SH
Sbjct: 576 SMRMELKIEGPSH 588


>gi|254475084|ref|ZP_05088470.1| multi-sensor hybrid histidine kinase [Ruegeria sp. R11]
 gi|214029327|gb|EEB70162.1| multi-sensor hybrid histidine kinase [Ruegeria sp. R11]
          Length = 843

 Score =  308 bits (789), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 93/461 (20%), Positives = 177/461 (38%), Gaps = 31/461 (6%)

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
            +    L    R    A A              +    F                     
Sbjct: 244 PVGNWQLAARPRGGWPAQAANTWQL----RVTVLLAGAFILFPTIMAGRLSAARRLIIRT 299

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP--VEDILRKPF 497
            +  +R +E    +L   +E +  GI  I+ +  +   +  +  L+  P    D+    +
Sbjct: 300 LKRRERDLETLSRRLEMAVETSKIGIWEIHEDDDMAIWDLRMRTLYDDPTGSGDVPLSTW 359

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL-PFSSCYSL 556
             F+       +     + L      +++          K +       +     +C   
Sbjct: 360 RSFILPADRDAVIEGFQKSLHNGTGHSVDFTVQLPDGTRKNIRAMGRAYRDERGRNCMIG 419

Query: 557 TMHDIS-------EWKQEK-------NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
              D++       + K+          +L+ AK  AEK    KS+FLA +SHEIRTP+  
Sbjct: 420 VEWDVTRDVELSNDLKRANLTLTKRNTELTQAKLAAEKADQAKSEFLANMSHEIRTPMNG 479

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           I+G ++++ N            +  + +  S + +L I+ND+LD+S++E+GKM +     
Sbjct: 480 IVGMADILANTDLSA----EQQQCVDTVRESSSALLKIINDILDLSRLEAGKMEISPIDF 535

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPS 721
            L + V   +  ++    EK +    ++  ++P +   D   ++QI LN+L NA+ FT  
Sbjct: 536 DLRKCVDGVVDTLRPRMVEKGLTFTQTYTADLPELAHGDNGRLRQILLNLLGNAVKFTKE 595

Query: 722 GGQ-IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
           G   + +S   +    +   V+DTG+G++  + E   + F Q   +      GTGLGL +
Sbjct: 596 GSVGLHVSRDKSDPYRMCFEVKDTGIGISEDQAEHIFERFSQADAATTRHFGGTGLGLTI 655

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIF----PLYDTSHPH 817
           +  + +   G+  + S P KG    +      P    + PH
Sbjct: 656 SNILAERMGGQITLASEPGKGATFRLEIRLEPPKAAQNAPH 696


>gi|91772833|ref|YP_565525.1| multisensor signal transduction histidine kinase [Methanococcoides
           burtonii DSM 6242]
 gi|91711848|gb|ABE51775.1| pleC (Non-motile and phage-resistance protein) -like multisensor
           signal transduction histidine kinase [Methanococcoides
           burtonii DSM 6242]
          Length = 519

 Score =  308 bits (789), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 102/530 (19%), Positives = 200/530 (37%), Gaps = 74/530 (13%)

Query: 341 LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400
           + + N  FL +      D I          +      +  ++  +     R       + 
Sbjct: 2   ITHCNDKFLEIISASRKDVIG--------FNMATSIRDEKMRDAVKAVLSRKPGHYEGKY 53

Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL-- 458
            T+       + +        ++    +   GI  +    +  +   +++  +L ++L  
Sbjct: 54  CTVIS--GKVIFIKADYNPNISEEGTLLGGIGIFEDITRRKEAEDAWKLDEYRLETLLQL 111

Query: 459 EATSDG----IAIINRE----------GIILSTNR--AVSKLFGYP-----VEDILRKPF 497
              +D     I    RE          G I   N   +V  +  +         I  KP 
Sbjct: 112 NQMTDRSMQKIVDFAREEAVRLTQSQVGYIAFVNEDESVLTMHSWSQAAMLECKIRDKPI 171

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT 557
              L+            + +  +       +  G  K+   L+  + I  +         
Sbjct: 172 VYTLKTTGLWGEALRQRKPIITNDYNVPNPLKKGYPKDHMKLTRHMNI-PVFDGERVVAV 230

Query: 558 --------------MHDIS----------EWKQEKNKLSHAKKIAEKESS---------- 583
                         +  ++          + KQ +  L        + +           
Sbjct: 231 AGVGNKDEEYDESDVRQLTLLMEGMWRIIQRKQSEEALQKYANELSEVNKELEKVNDDLK 290

Query: 584 ----HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639
                K++FL+ +SHE++TPL +I G+ E++ +   G L N +  +  N + R+   +  
Sbjct: 291 SLDVMKNEFLSNISHELKTPLVSIKGYVELVFDGSLGTL-NEQQKKAVNIVLRNSERLRR 349

Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA 699
           ++  LL IS +ES  +  H E V + E +   ++ V L   +K +LI  +   N+P I  
Sbjct: 350 LIESLLFISGLESRAIQYHIEKVRIAEIIDNVVNDVNLQIEDKGLLIENNVPENLPLING 409

Query: 700 DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKP 759
           D   +  +  N++ NAI FTPS G+II++  +   +++ + V+DTG+G+    +    + 
Sbjct: 410 DKARLSDMLTNLVDNAIKFTPSEGRIILN-AYEEEDDLHIEVKDTGIGIPKELIPNLFQR 468

Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           F Q+  S + R  GTG+GL + K +V+A+ G  +I S   KGT + I  P
Sbjct: 469 FYQVDASIKRRYGGTGVGLYICKNIVEAHKGNIWIESEEEKGTTVHIRLP 518


>gi|75674244|ref|YP_316665.1| histidine kinase [Nitrobacter winogradskyi Nb-255]
 gi|74419114|gb|ABA03313.1| histidine kinase [Nitrobacter winogradskyi Nb-255]
          Length = 838

 Score =  308 bits (789), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 123/716 (17%), Positives = 233/716 (32%), Gaps = 43/716 (6%)

Query: 116 MRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN--- 172
             L  ++    + P   +                     T+    ++     I  +    
Sbjct: 145 QPLRILAFGTWLPPEPALQMDHAVDALRSAGEGFLLNLVTSAGRTVEAMGRAIGGQAIVR 204

Query: 173 -REFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231
            R+  G R                      +                 +   +       
Sbjct: 205 IRDLGGLR-----RDLAEMTLRHDSLLAETEMLRAFATAAPWPLWARGKDGKLSFANQAY 259

Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291
                    +   +      D           ++ ++   +     I   +     +   
Sbjct: 260 ARATEAADSADAIQRNLELLDSEDRTAMSRALNDHATFAARLPI-IIGGERRMYDVH--A 316

Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLL 350
           L+     +   L      +LS       +    T+D+      V+     L + N S+  
Sbjct: 317 LRTGGGSAGIALDASEATALSGALARMADAHRRTLDQLSSGVAVFDGQRRLAFYNDSYRR 376

Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA---RLHTIQWNR 407
           L              L          D++ +  +   R         A   RLH      
Sbjct: 377 LWD------------LDRPFLDGHPDDSSVLDRLRAGRKLPEQPDFRAWKARLHEAYRAN 424

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL----CSILEATSD 463
           E    + ++P  +A          G      D       +     +L       L++ ++
Sbjct: 425 EAVKDVWYLPDGRALSIVTTPNPEGGVTYLFDDVTESLDLARRYDRLINVQRETLDSLTE 484

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
            +A+    G     N A ++++    E + ++P    +E     + +             
Sbjct: 485 AVAVFGSNGRAQLFNPAFARMWKLSPEALAQQPHIDTVEAWCKPLFDDDDAWRTIHKAVT 544

Query: 524 TLEKI----TLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579
            ++           K+  +L    +           LT HDI++ +  +  L       E
Sbjct: 545 GIDNRTAVPLKLERKDGSILDCMTMPLP---DGATMLTFHDITDSENVERALRERNDALE 601

Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639
                K DF+  VS+E+R+PLT IIGF+ ++ +   GPL   +  EY NYI  S + +L 
Sbjct: 602 AADQMKVDFVHHVSYELRSPLTTIIGFAHLMNDPGTGPLT-EKQAEYVNYITSSTDALLA 660

Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA 699
           + N++LD++ I++G M L   PV + + ++ A   +Q      RI++      +I   + 
Sbjct: 661 LTNNILDLATIDAGAMTLELGPVDVRKTIAAAAEGIQDRLTRDRIVLNVDVDPDIGDFIG 720

Query: 700 DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKP 759
           D R + Q+  N+L+NA  F+P    I +S   T +  V   V D G G+     +KA   
Sbjct: 721 DERRIIQVLYNLLANAAGFSPPDAVITVSARRTEH-SVRFAVMDEGPGIPPDVRDKAFDW 779

Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
           F     +   R  G GLGL L ++ V+ + G+ +       GT +   FPL   +H
Sbjct: 780 FE--SYANGSRHRGAGLGLSLVRSFVELHGGRVHFDPAIKSGTRVVCDFPLDRGAH 833



 Score = 65.4 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 45/382 (11%), Positives = 96/382 (25%), Gaps = 33/382 (8%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            W     G L   ++   +            R  ++ D         +   L    T+  
Sbjct: 243 LWARGKDGKLSFANQAYARATEAADSADAIQRNLELLDSED---RTAMSRALNDHATFA- 298

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
                PI         D+ AL         +G    GI               R+     
Sbjct: 299 --ARLPIIIGGERRMYDVHALR--------TGGGSAGIALDASEATALSGALARMADAHR 348

Query: 206 HLHEIKKGHSSVEK---------EKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256
              +      +V           + Y        P      +  S L    A +    + 
Sbjct: 349 RTLDQLSSGVAVFDGQRRLAFYNDSYRRLWDLDRPFLDGHPDDSSVLDRLRAGRKLPEQP 408

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQ-YFGTLQNNSKESFEYLSHRNHPSLSAYF 315
           +          +    E    +      +      T       ++ +        L+  +
Sbjct: 409 DFRAWKARLHEAYRANEAVKDVWYLPDGRALSIVTTPNPEGGVTYLFDDVTESLDLARRY 468

Query: 316 DEGENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
           D   N+  ET+D       V+ S+G     NP+F  + K    + +     + T+    K
Sbjct: 469 DRLINVQRETLDSLTEAVAVFGSNGRAQLFNPAFARMWKLSP-EALAQQPHIDTVEAWCK 527

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
              ++      ++++       +A    ++    + L    +P                 
Sbjct: 528 PLFDDDDAWRTIHKAVTGIDNRTAVPLKLERKDGSILDCMTMPLPDGA-------TMLTF 580

Query: 435 PEDVDTRINKRKMEIEVMQLCS 456
            +  D+   +R +      L +
Sbjct: 581 HDITDSENVERALRERNDALEA 602


>gi|170738563|ref|YP_001767218.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
 gi|168192837|gb|ACA14784.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
          Length = 708

 Score =  308 bits (789), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 102/366 (27%), Positives = 160/366 (43%), Gaps = 15/366 (4%)

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
           +     +  +++EA  + I   + EG I   N   ++L G   E +L             
Sbjct: 74  LAESEERYRNLVEAQIELIVQRDAEGRITFANEGFARLLGTSPEALLGTT-------REA 126

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM-HDISEWK 565
           ++      E      R     I   +    +  ++              L    +I+E  
Sbjct: 127 TIAESLAAETRPDGSRTADLAIAPAAGGPPRWFAVVESAVVGRDGRPEVLRAGREITERV 186

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           +    L  A+  AE  S  KS FLA VSHE RTPL  I+G ++++      P        
Sbjct: 187 EAVRSLDEARSRAEAASVAKSRFLATVSHEFRTPLNGILGMADLVLETPLSP----EQET 242

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           Y   I  SG  +L +++ +LD SKIE+G+++L  EP      V   + L+   A +K + 
Sbjct: 243 YIRAIKTSGEALLTLIDGILDFSKIEAGRLDLACEPFDPAALVESVVELLAPRAQDKGLE 302

Query: 686 IRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744
           I    A+++P  +L D   V+QI LN+  NA+ FT +GG  I  T     E+++L V DT
Sbjct: 303 IAADLADDLPPRVLGDGDRVRQILLNLAGNAVKFTEAGGVGI--TAERVGEDLVLAVHDT 360

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G G+    L    + F Q   S   R EGTGLGL + + +VD   G+    S P  G+  
Sbjct: 361 GPGIPEERLPLLFEEFEQGDGSASRRHEGTGLGLAITRRLVDRMGGRIETTSRPGAGSCF 420

Query: 805 EIIFPL 810
            ++ PL
Sbjct: 421 RVVLPL 426



 Score = 46.9 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 23/254 (9%), Positives = 58/254 (22%), Gaps = 25/254 (9%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           DA G +   +E   + +G     ++G                       R +        
Sbjct: 96  DAEGRITFANEGFARLLGTSPEALLGTTREATIA--------ESLAAETRPDGSRTADLA 147

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
                        +    +  R+          ++   R   +     + LD+       
Sbjct: 148 IAPAAGGPPRWFAVVESAVVGRDGRPE------VLRAGREITERVEAVRSLDE---ARSR 198

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
            +    +  +    +  +   P +  +      L    + + +           +  + +
Sbjct: 199 AEAASVAKSRFLATVSHEFRTPLNGILGMADLVLETPLSPEQETYIRAIKTSGEALLTLI 258

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
               DF  I   +              +   E L+ R         D+G  +  +  D  
Sbjct: 259 DGILDFSKIEAGRLDLACEPFDPAALVESVVELLAPR-------AQDKGLEIAADLADDL 311

Query: 330 PIPFFVYSHGNLFY 343
           P          +  
Sbjct: 312 PPRVL-GDGDRVRQ 324



 Score = 42.7 bits (99), Expect = 0.29,   Method: Composition-based stats.
 Identities = 15/231 (6%), Positives = 44/231 (19%), Gaps = 6/231 (2%)

Query: 242 SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301
                 A      +        +            T  +            +  ++   E
Sbjct: 2   GDGAGPAGTATTAQIGALARSEAGLVRAGSDALGATGLVLALLVLATAWYARRLARWRRE 61

Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDI- 360
                 H  +    +  E        +  +     + G + +AN  F  L        + 
Sbjct: 62  REVEHLHDRIWHLAESEERYRNLVEAQIELIVQRDAEGRITFANEGFARLLGTSPEALLG 121

Query: 361 --EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
               A    +L    +   +      +   +       +     +         +     
Sbjct: 122 TTREATIAESLAAETRPDGSRTADLAIAPAAGGPPRWFAVVESAVVGRDGRPEVLRAGRE 181

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE---ATSDGIA 466
                             +  +    R +     +  + L      +D + 
Sbjct: 182 ITERVEAVRSLDEARSRAEAASVAKSRFLATVSHEFRTPLNGILGMADLVL 232


>gi|118590259|ref|ZP_01547662.1| periplasmic sensor signal transduction histidine kinase [Stappia
           aggregata IAM 12614]
 gi|118437231|gb|EAV43869.1| periplasmic sensor signal transduction histidine kinase [Stappia
           aggregata IAM 12614]
          Length = 518

 Score =  308 bits (789), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 94/249 (37%), Positives = 156/249 (62%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I E +        A++ AE  +  KS FLA +SHE+RTPL AI+GFSE++K++  G + N
Sbjct: 239 IVELESANAMSDEARRRAEAANLAKSRFLATMSHELRTPLNAILGFSEIMKDEVLGKMHN 298

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
             Y  YA  I  SG  +L+++N++LD+S+IE+G+  LH EP+ LD+ V E  +++++ A 
Sbjct: 299 KNYQSYAEDIHGSGQHLLNLINEILDLSRIEAGRHELHEEPIFLDDIVEECGTMMKVRAK 358

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
            K I +  +   ++PR+ AD R+++Q+ LN+LSNA+ FTP  G++ I    TS+    + 
Sbjct: 359 AKTISLHHTHEPDLPRVWADERALRQVVLNLLSNAVKFTPVNGEVWIKVGPTSDGGQYVS 418

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           ++DTG G+   E+   ++ FGQ  ++ +    GTGLGL + +A+V+ + GKF + S P +
Sbjct: 419 IKDTGPGIPEDEIPTVLEAFGQGSHAIKTAEPGTGLGLSIVQALVNMHDGKFSLKSKPGE 478

Query: 801 GTLIEIIFP 809
           GT + +  P
Sbjct: 479 GTEVIVTLP 487


>gi|242281150|ref|YP_002993279.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           salexigens DSM 2638]
 gi|242124044|gb|ACS81740.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           salexigens DSM 2638]
          Length = 596

 Score =  308 bits (789), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 78/371 (21%), Positives = 153/371 (41%), Gaps = 30/371 (8%)

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
           +  ++ ++     DG+ +++    ILS NRA+  +F     D+ R P  +    +     
Sbjct: 247 QRNKIQAVFNGMWDGVMVLDGSCRILSVNRALQDIFPGIQNDLDRTPLEIIPSPDLYDAC 306

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWK 565
              +                       ++  + I+                  HDISE K
Sbjct: 307 REVV------GPEGPEATTVQIVLPNGRVYDVNIVRSPHTSEPGQGPGAIAVFHDISEIK 360

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + +                + DF+A VSHE+RTPLT++ G++E + +    P        
Sbjct: 361 RLETV--------------RQDFVANVSHELRTPLTSVKGYAETLLSDP--PPPESIQKN 404

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           +   I+++ N +  IV+DLL++S++ESG   +   P+   +A+ EA       A ++++ 
Sbjct: 405 FLATIEKNANHMCKIVDDLLNLSRLESGHEKVELMPIDPTDALREAWEACSGLAKKRKVD 464

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           ++ SF      ++AD   + Q+  N+L N I + P    +I+         +   V D+G
Sbjct: 465 LKRSFEKGDFTVMADSGQLMQLFRNLLENGIKYGPEENPVIVEHRVRE-GRLQFAVIDSG 523

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA---KGT 802
            G+   +  +  + F  +   ++     TGLGL +++ +V  + G+  +   P    +GT
Sbjct: 524 PGIPAADQPRIFERFYSVEKFRRNEFGSTGLGLAISRHIVSNHGGEISVQCPPEGHRQGT 583

Query: 803 LIEIIFPLYDT 813
                 PL   
Sbjct: 584 AFVFSLPLMQA 594


>gi|298248438|ref|ZP_06972243.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297551097|gb|EFH84963.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 484

 Score =  308 bits (789), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 85/491 (17%), Positives = 178/491 (36%), Gaps = 31/491 (6%)

Query: 323 PETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
              +D  P   +    +G   Y N  +           +E    +          D    
Sbjct: 16  DTLIDSIPQLVWTARPNGWHEYVNQRWRDYVGLT----LEQVQSVWAHFQFIHPDDQEGN 71

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
           + +    +  T           Q                 +   + +   G   +  + +
Sbjct: 72  R-MRWEYALETGALFEHEERLKQGPTGEYRWFLTRAMPMRDATGQIVTLFGTCTDIDEQK 130

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL--RKPFTV 499
             +  +   + +  +++++   GI +    G I+  N    ++ GY  ED+         
Sbjct: 131 RIEETLRPALERADTLMKSKIIGIFVT-EGGQIVDANDTFLRMTGYTREDLRAGCMNVLQ 189

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL-TM 558
                  +       E+ + +     EK  L    +   L + +    L  S    + ++
Sbjct: 190 MTPPEYMARTLQARQELDTWESMTPYEKEYLCQ--DGSRLPVLVCGVVLEHSPRQVIHSV 247

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            D S  K+ +                K DFL  VSHE+ TPLTA+   +  +  +     
Sbjct: 248 LDNSARKELEQH--------------KYDFLNIVSHELGTPLTAVKLQT-HLVRKHLEKH 292

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
                    + ++R    +  ++ +LLD+S+I++G++    E V L E + E +  +Q  
Sbjct: 293 SQHEAATELSRVERPVEQLECLIAELLDVSRIQAGRLEYVRERVDLGELLREVVDAMQHT 352

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738
           +    I++R S   ++   + D   + Q+  N+LSNA+ ++P    + +  + T    V 
Sbjct: 353 SPSHTIVVRGSMQTSL---IGDRDRLGQVFSNLLSNAMKYSPDARTVEVELSATEEA-VT 408

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           + VRD G+G+   +  K  + F +   ++     G G+GL +   +V ++ G   + S  
Sbjct: 409 ILVRDHGLGIPREQYNKIFERFYRTDVARLRAIPGLGMGLSIVAEIVKSHGGTIVVDSDV 468

Query: 799 AKGTLIEIIFP 809
            KG+   +  P
Sbjct: 469 GKGSTFTVTLP 479



 Score = 57.3 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 35/428 (8%), Positives = 108/428 (25%), Gaps = 26/428 (6%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKM--IGMRLCDVSDILHIDPNNHIGD-LLKRQN 141
             W    +G+ + +++     +G    ++  +             + N    +  L+   
Sbjct: 25  LVWTARPNGWHEYVNQRWRDYVGLTLEQVQSVWAHF-QFIHPDDQEGNRMRWEYALETGA 83

Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
            +  +        T  Y      A+P+     +      FG               +   
Sbjct: 84  LFEHEE-RLKQGPTGEYRWFLTRAMPMRDATGQIVTL--FGTCTDIDEQKRIEETLRPAL 140

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQ---SPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
           ++   L + K     V +    + +         + R   +   +        + +    
Sbjct: 141 ERADTLMKSKIIGIFVTEGGQIVDANDTFLRMTGYTREDLRAGCMNVLQMTPPEYMARTL 200

Query: 259 YPL--LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
                L + ES  P ++++   + ++         L++      + +      S     +
Sbjct: 201 QARQELDTWESMTPYEKEYLCQDGSRLPVLVCGVVLEH---SPRQVIHSVLDNSARKELE 257

Query: 317 EGENLTPETVDK-CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDI----EIAGGLSTLLD 371
           + +      V      P                   +++++  ++         L  L+ 
Sbjct: 258 QHKYDFLNIVSHELGTPLTAVKLQTHL-VRKHLEKHSQHEAATELSRVERPVEQLECLIA 316

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
                       +   R           +     +   S  +      + +   +     
Sbjct: 317 ELLDVSRIQAGRLEYVRERVDLGELLREVVDAMQHTSPSHTIVVRGSMQTSLIGDRDRLG 376

Query: 432 GIEPEDVDTRINKR-KMEIEVMQLCSILEATSDGIAIINREGII--LSTNRAVSKLFGYP 488
            +    +   +          ++L +  EA +  I + +    I     N+   + +   
Sbjct: 377 QVFSNLLSNAMKYSPDARTVEVELSATEEAVT--ILVRDHGLGIPREQYNKIFERFYRTD 434

Query: 489 VEDILRKP 496
           V  +   P
Sbjct: 435 VARLRAIP 442


>gi|171912499|ref|ZP_02927969.1| PAS/PAC Sensor Hybrid Histidine Kinase [Verrucomicrobium spinosum
           DSM 4136]
          Length = 684

 Score =  308 bits (789), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 99/426 (23%), Positives = 188/426 (44%), Gaps = 13/426 (3%)

Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
            A  + ++         T                  +E E  + +  +  +     QL  
Sbjct: 124 RAVENAMEKAAIQRQLETQRRALADKNAQLEEHVTKLEQEAAERQRVEDALRSSETQLRL 183

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           + +  S  +A ++RE      N A ++ +G  V+DI+    +  + +         LT  
Sbjct: 184 VTDHASVLLAQVDREHRYKFVNGAYAERYGREVKDIVGLHVSEIVGEKAYLAALPELTAA 243

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHA 574
             L  R   EK         + + +    +             + D++E K+ + +L  A
Sbjct: 244 F-LGQRVEFEKELPYEELGPRWIHVVYKAEHDLTGQVVSVVAVLTDLTERKRAEQELKEA 302

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
           +  A   S  K +FLAR+SHE+RTPL  ++  +    +    P          + I ++ 
Sbjct: 303 RDQALAASGAKDEFLARLSHELRTPLNPVLLLASEAADNPHLP---DEVRADFHTIRKNV 359

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
           +L   +++DLLD+++I  GK++L    V L + V +A + V+  A++KR+ ++ S     
Sbjct: 360 DLEARLIDDLLDVTRISRGKLSLELRRVDLHDVVRDAFTSVKGEADKKRLRLQLSLDGES 419

Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELE 754
           P +L D   ++QI  N+L+NA+ FTP GG+I+++T       V + V+D G+G++  EL 
Sbjct: 420 PYVLGDAVRLQQIFWNLLNNAVKFTPDGGRIVVATQIKE-AWVTVEVQDDGIGLSKEELT 478

Query: 755 KAMKPFGQIPNS---QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK--GTLIEIIFP 809
                F Q  +S      +  G GLGL +++ +V+ + G+    S P +  G +  +  P
Sbjct: 479 SVFDAFAQGEHSWPNGSHQFGGLGLGLAISRMLVEMHSGEISASS-PGRDAGAIFRVRIP 537

Query: 810 LYDTSH 815
           L   ++
Sbjct: 538 LQSENN 543



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/267 (7%), Positives = 62/267 (23%), Gaps = 13/267 (4%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS-DILHIDPNNHIGDLLKRQNTWYGK 146
            +D     K ++    +  G     ++G+ + ++  +  ++     +      Q   + K
Sbjct: 194 QVDREHRYKFVNGAYAERYGREVKDIVGLHVSEIVGEKAYLAALPELTAAFLGQRVEFEK 253

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
              +   G      I +     +    +        ++             K    +   
Sbjct: 254 ELPYEELGP---RWIHVVYKAEHDLTGQVVSV--VAVLTDLTERKRAEQELKEARDQALA 308

Query: 207 LHEIKKGHSSVEKEKYD------IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
               K    +    +        +        +  + ++V +         D+       
Sbjct: 309 ASGAKDEFLARLSHELRTPLNPVLLLASEAADNPHLPDEVRADFHTIRKNVDLEARLIDD 368

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
           LL     S  +              +  F +++  + +    L             +   
Sbjct: 369 LLDVTRISRGKLSLELRRVDLHDVVRDAFTSVKGEADKKRLRLQLSLDGESPYVLGDAVR 428

Query: 321 LTPETVDKCPIPF-FVYSHGNLFYANP 346
           L     +       F    G +  A  
Sbjct: 429 LQQIFWNLLNNAVKFTPDGGRIVVATQ 455


>gi|307824890|ref|ZP_07655112.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
           SV96]
 gi|307733937|gb|EFO04792.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
           SV96]
          Length = 860

 Score =  308 bits (789), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 117/603 (19%), Positives = 222/603 (36%), Gaps = 58/603 (9%)

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
             +   +      +  +      I        Q      N        L+  +  S +  
Sbjct: 53  YAQLVSVSAEAAVAFEDSGRSQEILDTLRANPQILEAQINLRDGRM--LARYSIRSNTTL 110

Query: 315 FDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
                      +D+      V         N    L      +D++      +  + A  
Sbjct: 111 PQPLPTANGIYLDR-NTAVLVQR----LQDNAYLYLAMN---LDELNRQTRNTLRVFAIG 162

Query: 375 LSDNNAIKPVMLYRSDRTCI--AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
           +    A   + L  + +  I    S    T++    ++     +     ++         
Sbjct: 163 VIVLLATVALGLLAALQKSIVGPISTLAETVEQVHSHADYSQRVLTSGTDEVARLSQSFN 222

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
              + +  R  +  +   ++   ++L+  + GI     +G + S NRA   L GY  +++
Sbjct: 223 AMMDAIQER--EDDLRRLMLFQRTLLDNVAHGIISTAPDGTVTSFNRAAESLLGYTADEV 280

Query: 493 LRK--PFTVFLEQNTPSVMNHYLTEILSL------------DLRQTLEKITLGSTKEEKL 538
           + K  P      +       H   E+                   T EK      K    
Sbjct: 281 IGKQTPALWHDTEEVAQYALHLSEELGETILPGFAVFSARPRRNLTEEKEWTFIRKNGAR 340

Query: 539 LSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKI----------------- 577
           + + + +  L   S     +    +D++E KQ +N+L   K                   
Sbjct: 341 VPVLLSVTALRTESGQITGFVGLTYDLTERKQAENELRRHKDQLEETVQQRTADLLLARD 400

Query: 578 -AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
            AE  +  K  FLA +SHE+RTPL  I+G++++++          R     N I +S   
Sbjct: 401 AAEAANKAKGLFLAHMSHELRTPLNGILGYAQILQRDELVG---ERKAAALNIIRQSSEY 457

Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696
           +  +++D+LD+S+IE+G+++     +SL + +     +V L A +K +      A ++P 
Sbjct: 458 LRALIDDILDLSRIETGRLDFVLSNISLAKFLRGVTDIVGLRARQKGLEFSCELAADLPA 517

Query: 697 -ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755
            I  D R ++Q+ LN+L+NA+ FT SG Q+++             V DTG+G+   ELE 
Sbjct: 518 GIRCDERRLRQVLLNLLTNAVKFTDSG-QVVLRVGRVGPSRFSFAVEDTGIGIEQNELEL 576

Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE--IIFPLYDT 813
             +PF Q+    Q R  GTGLGL +++ ++        + S   KG+     +      +
Sbjct: 577 IFRPFEQV-GDLQRRLGGTGLGLAISRQLMRYLGSDIVVESRVGKGSTFRFEVELQAASS 635

Query: 814 SHP 816
           S P
Sbjct: 636 STP 638



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/269 (10%), Positives = 73/269 (27%), Gaps = 33/269 (12%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI----------------LHIDPNNHIG 134
             G +   +      +G  A ++IG +   +                     I P   + 
Sbjct: 258 PDGTVTSFNRAAESLLGYTADEVIGKQTPALWHDTEEVAQYALHLSEELGETILPGFAVF 317

Query: 135 DLLKRQN-TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193
               R+N T   + T     G    VP+ L+   + + + + +GF   G+ +        
Sbjct: 318 SARPRRNLTEEKEWTFIRKNG--ARVPVLLSVTALRTESGQITGF--VGLTYDLTERKQA 373

Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253
               +R   +     + +     + ++  +  ++        M +++ +          +
Sbjct: 374 ENELRRHKDQLEETVQQRTADLLLARDAAEAANKAKGLFLAHMSHELRTPLNGILGYAQI 433

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE---------SFEYLS 304
           L+ ++   L  E  +        +    +          +  +             ++L 
Sbjct: 434 LQRDE---LVGERKAAALNIIRQSSEYLRALIDDILDLSRIETGRLDFVLSNISLAKFLR 490

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPF 333
                       +G   + E     P   
Sbjct: 491 GVTDIVGLRARQKGLEFSCELAADLPAGI 519


>gi|308189064|ref|YP_003933195.1| aerobic respiration control sensor protein [Pantoea vagans C9-1]
 gi|308059574|gb|ADO11746.1| aerobic respiration control sensor protein [Pantoea vagans C9-1]
          Length = 783

 Score =  308 bits (789), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 88/436 (20%), Positives = 183/436 (41%), Gaps = 17/436 (3%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L             L+         L       +KA    E +  + +  E
Sbjct: 81  EESRQRLARLVDKLEEMRTRDLELNQQMKETITQLNQEISDRKKAELAREQV-MDKLREE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
                  + ++E +   L S L+A+ D +   N +      NRA+  L G   + ++   
Sbjct: 140 VTRREQAQIELEQQSSFLRSFLDASPDLVFYRNIDKQFSGCNRAMELLTGKSEKQLIGLT 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCY 554
                +    + +     ++   ++  T E+        +    +R +    ++   S  
Sbjct: 200 PRDIYDDEAATKVLETDEKVFRHNVSLTYEQWLQYPDGRKACFEIRKVPYYDRVGKRSGL 259

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+ ++ L +        S  K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 260 MGFGRDITERKRYQDALEN-------ASREKTTFISTISHELRTPLNGIVGLSRILLDTD 312

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                N   ++Y   I  S   + +I ND++++ KIE  K+ L  +P+     +++  +L
Sbjct: 313 L----NQEQLKYLKTIHVSAITLGNIFNDVIEVDKIERRKVQLDNQPLDFTGFLADLENL 368

Query: 675 VQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
             L A  K +    +    +P  I  D   ++QI  N++ NA+ FT  G +I++   +  
Sbjct: 369 SGLLAQPKGLKFVLAPQLPLPHMISTDGTRLRQILWNLIGNAVKFTQQG-EIVVRVAYEQ 427

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMGKF 792
           +E +   V+D+G+G+   E +K    + Q+ +    +   GTG+GL +++ +  A  G  
Sbjct: 428 DETLRFEVQDSGMGIRQEEQDKIFAMYYQVKDQHGGKPATGTGIGLAVSRRLAQAMGGDI 487

Query: 793 YIFSTPAKGTLIEIIF 808
           ++ S P +G+   +  
Sbjct: 488 HVHSAPGQGSCFTVEI 503



 Score = 48.5 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/246 (9%), Positives = 62/246 (25%), Gaps = 21/246 (8%)

Query: 222 YDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL----TSEESSLPEQEDFHT 277
             + +  +      + +++    +  A   D L+  +   L      +E+     ++   
Sbjct: 62  GLLITPWAVYFLSVVVDQLEESRQRLARLVDKLEEMRTRDLELNQQMKETITQLNQEISD 121

Query: 278 INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS 337
               +  ++Q    L+                      ++  +     +D  P   F  +
Sbjct: 122 RKKAELAREQVMDKLREEV---------TRREQAQIELEQQSSFLRSFLDASPDLVFYRN 172

Query: 338 HG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA 396
                   N +  LLT       I        L       D  A K +           +
Sbjct: 173 IDKQFSGCNRAMELLTGKSEKQLIG-------LTPRDIYDDEAATKVLETDEKVFRHNVS 225

Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
                 +Q+                ++  +     G   +  + +  +  +E    +  +
Sbjct: 226 LTYEQWLQYPDGRKACFEIRKVPYYDRVGKRSGLMGFGRDITERKRYQDALENASREKTT 285

Query: 457 ILEATS 462
            +   S
Sbjct: 286 FISTIS 291



 Score = 40.0 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 24/154 (15%), Positives = 49/154 (31%), Gaps = 9/154 (5%)

Query: 67  YLDSENTF--VFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI 124
            L+ +++F   F      + F  NID        +  +    G    ++IG+   D+ D 
Sbjct: 149 ELEQQSSFLRSFLDASPDLVFYRNIDKQ--FSGCNRAMELLTGKSEKQLIGLTPRDIYDD 206

Query: 125 LHIDPNNHIGDLLKRQN-TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI 183
                     + + R N +   +  L   +G       ++  +P Y R  + SG  GFG 
Sbjct: 207 EAATKVLETDEKVFRHNVSLTYEQWLQYPDGRKACF--EIRKVPYYDRVGKRSGLMGFG- 263

Query: 184 VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSV 217
                     +   +   ++ +            
Sbjct: 264 -RDITERKRYQDALENASREKTTFISTISHELRT 296


>gi|197287481|ref|YP_002153353.1| aerobic respiration control sensor protein ArcB [Proteus mirabilis
           HI4320]
 gi|194684968|emb|CAR47176.1| aerobic respiration control sensor/response regulatory protein
           [Proteus mirabilis HI4320]
          Length = 778

 Score =  308 bits (789), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 85/436 (19%), Positives = 178/436 (40%), Gaps = 17/436 (3%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   +             L++        L +      +  +         ++ E
Sbjct: 81  EESRRRLSRMVDKLGVMRQRDLELNSQLKENIEQLNLEIQ-EREKVEKAHLELLEKLKSE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
                + + ++E +   L S L+A+ D +   N +      NRA   L G   + ++   
Sbjct: 140 MKRRELTQIELEQQSSLLRSFLDASPDLVYYRNEDNEFSGCNRATELLTGKSEKQLIGLT 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII--KKLPFSSCY 554
                +++    +     ++   ++  T E+  +     +    LR +    ++      
Sbjct: 200 PLDVYDEDIAVKVMETDEKVFRHNVSLTYEQWLVYPDGRKACFELRKVPFYDRIGKRHGL 259

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+ ++ L +        S  K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 260 MGFGRDITERKRYQDALEN-------ASRDKTTFISTISHELRTPLNGIVGLSRILLDTE 312

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
             P      + Y   I  S   + +I ND++++ KIE  K+ L  +P+   E +S+  +L
Sbjct: 313 LSP----EQLNYLKTIHVSAITLGNIFNDVIEMDKIERRKIQLDNQPIDFTEFISDLENL 368

Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
             L    K +         +P  I  D   ++QI  N++ NA+ FT  G +I +     +
Sbjct: 369 SGLLVQPKGLKFTLEAQETLPHKITTDGTRLRQILWNLIGNAVKFTQEG-EIKVRIWQEA 427

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQI-PNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
            +++   V+D+G+G+   ELEK    + Q+  +       GTG+GL ++K +     G  
Sbjct: 428 PDKLFFEVKDSGIGIPQGELEKIFAMYYQVNDSQGGRSATGTGIGLAVSKRLAQHMGGDI 487

Query: 793 YIFSTPAKGTLIEIIF 808
           ++ S    G++  +  
Sbjct: 488 HVESELGHGSIFTLSI 503


>gi|284166199|ref|YP_003404478.1| multi-sensor signal transduction histidine kinase [Haloterrigena
           turkmenica DSM 5511]
 gi|284015854|gb|ADB61805.1| multi-sensor signal transduction histidine kinase [Haloterrigena
           turkmenica DSM 5511]
          Length = 674

 Score =  308 bits (789), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 91/616 (14%), Positives = 216/616 (35%), Gaps = 29/616 (4%)

Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270
           + G         D+ SQ            V  L E        L T    +         
Sbjct: 75  RDGLVGTATVSTDLDSQAGYTLLSEEPVIVDDLREEERFSGPELLTNHDVVSGVSVIIGS 134

Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL-SAYFDEGENLTPETVDKC 329
            +E +  +  +   +K++     N  + +   L+     +       E E       D  
Sbjct: 135 VEEPWGVLGTHTTDRKEFTTHEANFVQSAANILAAAIERANKEDQLREREAQLSVATDAA 194

Query: 330 PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389
            I  +++      +    FL        + +     +    +    +D + I   +    
Sbjct: 195 SIGLWLWDVRENVFTADEFLAEAYGMDPEIVTTGAPIEAFFEPVPETDEDGIWDRLDRAL 254

Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449
           +    +A  R   I+    + + +      + +   + +  +G   +  + +  +++++ 
Sbjct: 255 ETGVFSAEYR---IENGDGDVMWVVSRGEVEYDASGDPVRMHGAVTDITERKRREQQLKE 311

Query: 450 EVMQLCSILEATSDGIAIINR---------EGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
              +   +  + S+G  +I R         +   +  N A  +  G    D++ K     
Sbjct: 312 REARYRDLFTSMSEGYCVIERVDTPPAEPIDFRYIEANPAFEEHTGL--ADVVGKTIREL 369

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
           + +        Y   ++        E+         + L            +   +   D
Sbjct: 370 VPEEQEEWFETY-DSVVETGDPVRFERELTTQ---GRFLECYAFPVGDESDAQVGVLFTD 425

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           ++E  + + +L    +  E  +     F    SH+++ PL  +  + + +  +R+G   +
Sbjct: 426 VTERVERERRLEELVERLETSNDRLEQFAYAASHDLQEPLRMVSSYLQ-LVERRYGDELD 484

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
               E+  +     + + ++++ LL  S++E+      FEPV L+  + + +  +QL   
Sbjct: 485 AEGREFLQFAVDGADRMREMIDGLLKYSRVETEGDP--FEPVDLNAVLEDVLDDLQLRFE 542

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEV-I 738
           E    + T    ++P +  D   ++QI  N+L NAI ++  G  +I +S    S ++   
Sbjct: 543 ESNGEVTTE---SLPTVEGDSGQLRQIFQNLLDNAIEYSGDGPPRIRVSAERRSGDDAWE 599

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           + V D G+G+ +   ++    F            GTG+GL + + +++ + G+  + S P
Sbjct: 600 ISVSDDGIGIDSEYSDQIFDVFQSYHEG--EGYNGTGIGLAICERIIERHGGEIRVTSEP 657

Query: 799 AKGTLIEIIFPLYDTS 814
            +G+      P    S
Sbjct: 658 GEGSTFTFTLPAASDS 673



 Score = 43.1 bits (100), Expect = 0.20,   Method: Composition-based stats.
 Identities = 28/279 (10%), Positives = 70/279 (25%), Gaps = 15/279 (5%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151
                E +    +  G     ++G  + ++      +       +++  +    +     
Sbjct: 342 DFRYIEANPAFEEHTGL--ADVVGKTIRELVPEEQEEWFETYDSVVETGDPVRFE----- 394

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
            E T     ++  A P+   +    G     +      +     L +RL+     L +  
Sbjct: 395 RELTTQGRFLECYAFPVGDESDAQVGVLFTDVTERVERERRLEELVERLETSNDRLEQFA 454

Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKV---SSLTEYYAHKDDVLKTEKYPLLTSEESS 268
              S   +E   + S        R  +++         +A        E    L      
Sbjct: 455 YAASHDLQEPLRMVSSYLQLVERRYGDELDAEGREFLQFAVDGADRMREMIDGLLKYSRV 514

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
             E + F  ++L           + ++ +  FE  +           +       +    
Sbjct: 515 ETEGDPFEPVDL-----NAVLEDVLDDLQLRFEESNGEVTTESLPTVEGDSGQLRQIFQN 569

Query: 329 CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
                  YS         S    +   + +      G+ 
Sbjct: 570 LLDNAIEYSGDGPPRIRVSAERRSGDDAWEISVSDDGIG 608


>gi|300864607|ref|ZP_07109465.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300337356|emb|CBN54613.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 708

 Score =  308 bits (789), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 94/329 (28%), Positives = 156/329 (47%), Gaps = 7/329 (2%)

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
           ++ G    + +  P    LE+ T +     L  +      +   +  L   K+E  L++ 
Sbjct: 375 QIVGIVSHEHIGPPRQWALEERTFADSLANLVALAIEGFERQRAQQALSKAKQELELTVE 434

Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
               +L  ++       +I+E K+ +  L  A   AE  S  KS FLA +SHE+RTPL A
Sbjct: 435 NRTVQLKSANKLLRF--EIAERKRAEVALQEALHKAEAASRAKSTFLANMSHELRTPLNA 492

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           IIG+SE +  +     G    +     I  +G  +L ++ND+LD+SKIE+GKM L+ E  
Sbjct: 493 IIGYSE-MLEELASDEGLEDLLPDIQKIRSAGKHLLTLINDILDLSKIEAGKMELYLESF 551

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
            L + V + I+ +   A++    +  S  +++  +  DL  V+QI  N+LSNA+ FT   
Sbjct: 552 DLADLVGDVIATLHPLAHKNSNKLEVSCCSDLGVVFTDLTKVRQILFNLLSNALKFT-EN 610

Query: 723 GQIIISTTHTSN---EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
           G + +S T       + V L V DTG+GM+  + +   + F Q   S   +  GTGLGL 
Sbjct: 611 GTVRLSATREMGSNSDWVYLCVADTGIGMSVEQQQCLFEVFNQGDASTTRKYGGTGLGLA 670

Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           +++       G   + S    G+   +  
Sbjct: 671 ISRRFCQMMGGDITVESELGVGSTFTVHL 699



 Score = 73.1 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/189 (11%), Positives = 62/189 (32%), Gaps = 17/189 (8%)

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM--------EIEVMQLCSILEATSD 463
            +         +      +  +E     +   + ++             +  +I +AT  
Sbjct: 15  VLRLRSEITELKSERADLEILLETTTEHSDRVEAQLQGFAESVLRESEERFRAIAQATPV 74

Query: 464 GIAIIN-REGIILSTNRAVSKLFGYPVEDILRK-PFTVFLEQNTPSVMNHYLTEILSLDL 521
            + I    +G IL  N   S L G  +ED++ +     + +++    +   L+       
Sbjct: 75  PVLIARVADGKILYANAQFSALLGISLEDLIDRYTPDFYWDRSDREKVLDALSR-----D 129

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH--DISEWKQEKNKLSHAKKIAE 579
                        +     + + ++ L FS   +      D+++ K  +  L ++++   
Sbjct: 130 GYVQNWEMQAKKVDGTPFWVMVSVQPLTFSGQPAALFALYDLTKRKAGEQVLLNSERRLR 189

Query: 580 KESSHKSDF 588
           ++S    + 
Sbjct: 190 RQSLALLEL 198



 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/207 (11%), Positives = 55/207 (26%), Gaps = 17/207 (8%)

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
                S+E  + E     +      +++     L   + E  + +  +      +   E 
Sbjct: 2   QEEELSKEQLILEVLRLRSEITELKSERADLEILLETTTEHSDRVEAQLQGFAESVLRES 61

Query: 319 ENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
           E          P+P  +     G + YAN  F  L      D I                
Sbjct: 62  EERFRAIAQATPVPVLIARVADGKILYANAQFSALLGISLEDLI------DRYTPDFYWD 115

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
            ++  K +     D         +   + +      M  +     +  P  +       +
Sbjct: 116 RSDREKVLDALSRDGYVQNWE--MQAKKVDGTPFWVMVSVQPLTFSGQPAALFAL---YD 170

Query: 437 DVDTRINKRKMEIEVMQLC----SILE 459
               +  ++ +     +L     ++LE
Sbjct: 171 LTKRKAGEQVLLNSERRLRRQSLALLE 197



 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 46/428 (10%), Positives = 115/428 (26%), Gaps = 18/428 (4%)

Query: 34  FETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHG 93
            ++E++  E     + E S+  +   +  + +   +SE  F        V       A G
Sbjct: 25  LKSERADLEILLETTTEHSDRVEAQLQGFAESVLRESEERFRAIAQATPVPVLIARVADG 84

Query: 94  YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIE 153
            +   + +    +G     +I     D       D    +  L +       +     ++
Sbjct: 85  KILYANAQFSALLGISLEDLIDRYTPDF-YWDRSDREKVLDALSRDGYVQNWEMQAKKVD 143

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
           GT     + ++  P+      FSG      +         +A  + L      L      
Sbjct: 144 GTPF--WVMVSVQPL-----TFSG--QPAALFALYDLTKRKAGEQVLLNSERRLRRQSLA 194

Query: 214 HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE 273
              + +E+                 +++    +    D V          +  S+  + +
Sbjct: 195 LLELGRERTLNSGD-----LNAAIREITETAAHTLEVDKVSLWLYNDFRFTVRSAESQID 249

Query: 274 DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF 333
               ++ +  T +     L  N  E   ++  +         D  E  +    ++  I  
Sbjct: 250 LGLGVSADSQT-EANTALLAKNLDEQPYFVKSKKPNLKLVCLDLYERSSDRHWNRLEIST 308

Query: 334 FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD-APKLSDNNAIKPVMLYRSDRT 392
                G L  +  +          + +     L  L     ++             +   
Sbjct: 309 SDLRAGFLDTSLENAEEHFGLPLPETLLAQNSLKELYSKEAEIFSPRPTDESANSSTLNV 368

Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
            I    ++  I  + E+         E+            +  E  + +  ++ +     
Sbjct: 369 PIRLGGQIVGI-VSHEHIGPPRQWALEERTFADSLANLVALAIEGFERQRAQQALSKAKQ 427

Query: 453 QLCSILEA 460
           +L   +E 
Sbjct: 428 ELELTVEN 435


>gi|260428952|ref|ZP_05782929.1| sensory box sensor histidine kinase/response regulator [Citreicella
           sp. SE45]
 gi|260419575|gb|EEX12828.1| sensory box sensor histidine kinase/response regulator [Citreicella
           sp. SE45]
          Length = 783

 Score =  308 bits (789), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 94/408 (23%), Positives = 184/408 (45%), Gaps = 16/408 (3%)

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469
            + + F+   +  +  ++      +        + R+ + E  QL  +    +D   +++
Sbjct: 193 FVFLRFVDRAERRRTEDSRRLLVGQEALERANSDLRESQAEARQLALVARHANDSFMLLD 252

Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR-QTLEKI 528
               I+  N   +++ G+  ++++ +     L           LTEI    L  + L   
Sbjct: 253 NALRIIWVNEGFTRMKGFHADEVMGRTPVEVLAGPDSD--LEALTEISRSALAGEPLRIE 310

Query: 529 TLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
            L  TK+ + + +  +   +  +S       +T  DI++ +    +L+ AK+ AE  +  
Sbjct: 311 ILNYTKDGRQIWVEAVFAPMLDASGTVEKVIVTERDITDARLRAIELADAKERAESGARA 370

Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
           K+ FLA +SHEIRTP+  IIG ++++ +       +     Y   I  S   +L I+ND+
Sbjct: 371 KAAFLATMSHEIRTPMNGIIGMADLLSDGAL----SEDQQLYVATIRTSAEALLKIINDI 426

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRS 703
           LD SK+E+ K  +  EP SL   + +A  +++  A EK + +       +P  +L D   
Sbjct: 427 LDYSKLEADKFAIVAEPFSLAACIRDAAGILRPQALEKGLFLDICHERPLPDSVLGDSGR 486

Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILRVRDTGVGMTNYELEKAMKPF 760
           ++QI +N+L NA+ FT +GG + ++T    ++    + + V+D+G+G+     E+    F
Sbjct: 487 LRQILINLLGNAVKFTATGG-VTLTTRVEGDDAGVALTVTVQDSGIGVAPDRAERIFDQF 545

Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            Q       R  GTGLGL +++ +     G   +      G   E+  
Sbjct: 546 EQADAETTRRFGGTGLGLAISRELAVRMGGGLRLVEGRGSGACFELTL 593



 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 12/172 (6%), Positives = 40/172 (23%), Gaps = 6/172 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL--HIDPNNHIGDLLKRQNTWYGK 146
           +D    +  ++E   +  G +A +++G    +V       ++    I            +
Sbjct: 251 LDNALRIIWVNEGFTRMKGFHADEVMGRTPVEVLAGPDSDLEALTEISRSALAGEPLRIE 310

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
              +  +G    + ++    P+   +      +                      ++   
Sbjct: 311 ILNYTKDGRQ--IWVEAVFAPMLDASGTVE--KVIVTERDITDARLRAIELADAKERAES 366

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
               K    +    +              + +   S  +           E 
Sbjct: 367 GARAKAAFLATMSHEIRTPMNGIIGMADLLSDGALSEDQQLYVATIRTSAEA 418



 Score = 48.1 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 13/176 (7%), Positives = 41/176 (23%), Gaps = 7/176 (3%)

Query: 282 QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-N 340
           ++  +      +++ +      +     S                      F +  +   
Sbjct: 197 RFVDRAERRRTEDSRRLLVGQEALERANSDLRESQAEARQLALVARHANDSFMLLDNALR 256

Query: 341 LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400
           + + N  F  +  + + + +        +L  P  SD  A+  +               +
Sbjct: 257 IIWVNEGFTRMKGFHADEVMGRTPV--EVLAGPD-SDLEALTEISRSALAGE--PLRIEI 311

Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
                +               +           E +  D R+   ++     +  S
Sbjct: 312 LNYTKDGRQIWVEAVFA-PMLDASGTVEKVIVTERDITDARLRAIELADAKERAES 366


>gi|322419410|ref|YP_004198633.1| multi-sensor signal transduction histidine kinase [Geobacter sp.
           M18]
 gi|320125797|gb|ADW13357.1| multi-sensor signal transduction histidine kinase [Geobacter sp.
           M18]
          Length = 691

 Score =  308 bits (789), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 87/397 (21%), Positives = 171/397 (43%), Gaps = 32/397 (8%)

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
           +E       S++E  SD I +I  +  I   N+   + FGY  ++++  P T  L     
Sbjct: 282 LERSEELYKSLMEDASDAIVVIGADESIRMVNKMAEEFFGYEAKELVGLPLTKMLLLLNI 341

Query: 507 SVMN--HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564
           S +   H +  + +       E           +  L     K    +       D++  
Sbjct: 342 SNIPKVHRIFRVAAEGAHIAEEMQLSRKEGAGMVAMLHASSIKSGSETLVQAIFRDVTRE 401

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           ++    L  +     + +  K  FL   SHE++TPLT I+G+SE +         +   +
Sbjct: 402 REIIMNLEKSSADLARLNRMKDSFLGLASHELKTPLTVIMGYSE-LITTDLADKVDKTVL 460

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           E    I  +   + +I+ D++D+S I+  ++ L  E + L+  +  +++ ++ + + ++ 
Sbjct: 461 EMVVNIANAAARLDNIIKDMVDVSMIDEKRLQLKVEDIQLNRLIEASVNELRFFFSMRKQ 520

Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT-------------- 730
            +  +   ++P I  D   + Q+  NIL NAI FTP GG+I +S++              
Sbjct: 521 EVVLNLDESLPTIRGDALRLMQLLSNILGNAIKFTPDGGRITVSSSAKYLLRGPAGAEVG 580

Query: 731 ---HTSNEEVILRVRDTGVGMTNYELEKAMKPFG-----QIPNSQQ--IRGEGTGLGLPL 780
                 +  + + + DTG+G+   +  +    F      Q  +S +   + +G GLGL +
Sbjct: 581 QQGREHHLFLEITITDTGIGIDREDQLRVFDKFYEVGNIQEHSSGKVAFKAKGAGLGLSI 640

Query: 781 AKAMVDANMGKFYIFST---PAK--GTLIEIIFPLYD 812
           AK +VD + G+ ++ ST   P +  G+   I+ PL  
Sbjct: 641 AKGIVDMHGGEIWVESTGYNPERFPGSTFHILLPLAP 677


>gi|299069582|emb|CBJ40854.1| sensory histidine kinase in two-component regulatory system
           [Ralstonia solanacearum CMR15]
          Length = 676

 Score =  308 bits (789), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 101/433 (23%), Positives = 185/433 (42%), Gaps = 22/433 (5%)

Query: 392 TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE- 450
              A    L       +  L    +           + +          R  + + +   
Sbjct: 98  ALFAGLVALQISPPPAQPILPTQLVVLALGTLLICVLCEQLRRARAGAERRARAETQQRV 157

Query: 451 -VMQLCSILEATSDGIAIINREGIILST-NRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
              +L + L+A+   +  ++         N     +FG P  ++L +       +   S 
Sbjct: 158 SQQRLLAALQASPISLYDVDNTMHFTWVHNP----VFGLPPHELLGRTVREVFGRRAASR 213

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQ 566
           +      +++  L   +E        +  +  + ++  +         +  + DI+E +Q
Sbjct: 214 LTEAGQRVIATGLPTRVEFAFRRLHTQRVVYDVVVMPLRDDTGEIIGLTNAVIDITEHRQ 273

Query: 567 EK-------NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
            +          S A++ AE+ S  K DFLA VSHE+RTPL A++G+++++  +   P  
Sbjct: 274 AEARRALLLEAESRAREEAERASRLKDDFLATVSHELRTPLNAVLGWAQLLAMR---PYD 330

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
              +      I+RS    + +++DLLD+S I SGK+ L   PV L + +  A   ++  A
Sbjct: 331 EAMFRRGLEAIERSARTQVHLIDDLLDMSAILSGKVPLEIGPVDLADVLERARETIEPMA 390

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
            +K+I + T +   +P +  D   +KQ+  N+L+NA+ FTP GG + I+    ++  V  
Sbjct: 391 RQKQITVDTEYLP-VPLLQGDAGRLKQVFWNLLANAVKFTPEGGHVRITVQAGADGLVA- 448

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY-IFSTP 798
            VRDTG+G+    L      F Q   S   R  G GLGL +AK +V+ + G+     S  
Sbjct: 449 TVRDTGIGIEPTFLPHVFDRFQQADLSSTRRHGGLGLGLAIAKQLVELHHGRITAASSGA 508

Query: 799 AKGTLIEIIFPLY 811
             GT + +  PL+
Sbjct: 509 DLGTTMAVTLPLH 521



 Score = 51.2 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/247 (10%), Positives = 63/247 (25%), Gaps = 21/247 (8%)

Query: 105 TIGNYAFKMIGMRLCDVSDILHIDPNNHI----GDLLKRQNTWYGKTTLWPIEGTNLYVP 160
             G    +++G  + +V         + +      ++        +     +      V 
Sbjct: 189 VFGLPPHELLGRTVREV---FGRRAASRLTEAGQRVIATGLPTRVEFAFRRL--HTQRVV 243

Query: 161 IDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKE 220
            D+  +P+     E  G     I           A    L +  S   E  +  S ++ +
Sbjct: 244 YDVVVMPLRDDTGEIIGLTNAVI--DITEHRQAEARRALLLEAESRAREEAERASRLKDD 301

Query: 221 KYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINL 280
                S +   P        + L     + + + +     +  S  + +   +D   ++ 
Sbjct: 302 FLATVSHELRTPLN-AVLGWAQLLAMRPYDEAMFRRGLEAIERSARTQVHLIDDLLDMSA 360

Query: 281 NQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN 340
               K        + +               +      +       +  P+P      G 
Sbjct: 361 ILSGKVPLEIGPVDLADVL-------ERARETIEPMARQKQITVDTEYLPVPLLQGDAGR 413

Query: 341 L--FYAN 345
           L   + N
Sbjct: 414 LKQVFWN 420


>gi|240142104|ref|YP_002966614.1| putative multi-sensor Histidine kinase [Methylobacterium extorquens
           AM1]
 gi|240012048|gb|ACS43273.1| putative multi-sensor Histidine kinase [Methylobacterium extorquens
           AM1]
          Length = 970

 Score =  308 bits (789), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 110/680 (16%), Positives = 218/680 (32%), Gaps = 38/680 (5%)

Query: 160 PIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEK 219
              +  +      R     +           +   A    L  +      ++      E 
Sbjct: 49  WTWVGYVSTRDYTRSIESAQ-----KSADNLSLAFAQQVALRVELVDRILLEIASRLGED 103

Query: 220 EKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTIN 279
             +D+    +  P   M   +  +             ++    ++EE  L          
Sbjct: 104 PAFDLGRWTARNPAA-MDRVLDLVVIASGSSARASSDQEERRPSAEEGELFRILTAPDAP 162

Query: 280 LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG 339
               +++                L      +     D   +              + +  
Sbjct: 163 GLAVSRRSVDRATGRGIVRVGRALGQAGIVAAVVEADTLLSHGSRIDVGTKGIVSISAGD 222

Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399
               A      + +    +    +    +  +   +  ++      +  +     A  A 
Sbjct: 223 GTLTARLPAPRMPQGLLSETWLASSRTLSASERCSIGRSSLDGIARIVCTHEVPNAPLAA 282

Query: 400 LHTIQWNRENSLAMTFIP----FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
              +  +  ++           +     F            +       R +      L 
Sbjct: 283 TVALAMDETSADFAASRRNYYVWALFFSFGAAAFALHFFFREKRMEQFARALADSEGHLR 342

Query: 456 -------SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
                  + L++ ++GIA+   +  +   NR    L   P      +     ++     +
Sbjct: 343 EQGIALTTTLDSVAEGIALFGPDDRLKLLNRRGYDLLAIPRTAEEEQ--WHLIQILEWQI 400

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP----------FSSCYSLTM 558
              +  E       Q L     G    +  L +    +                  + T 
Sbjct: 401 AQGHFEEFPPGTPVQRLIDEQYGGLGLKHSLPVFARHRADGCVLEIRTYPSKDGGTTRTY 460

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            D++E ++    L  AK+ AE  +  K++F+A +SHEIRTPL  ++G + ++ +      
Sbjct: 461 TDVTERERTARALETAKEAAEAGNRAKTEFVATMSHEIRTPLNGVLGMASLLSDTPL--- 517

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
            + R   Y   I R G+ +L IV+D+LD SK+E+G+++L   P    E       +++  
Sbjct: 518 -DDRQRHYVGTIRRCGDALLSIVDDILDFSKLEAGRIDLEHIPFETSEVARSVSDILEPK 576

Query: 679 ANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT---SN 734
           A EK + I  S   + P R   D   ++Q+  N++ NA+ FT  G  I I  T       
Sbjct: 577 AAEKGLAITYSEDVDFPKRSCGDPNRLRQVLWNLVGNALKFTDEG-WISIEATVVKGPDG 635

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
             +   V DTG+G+      +  + F Q   S   R  GTGLGL + + +V+A  G+  +
Sbjct: 636 PRLRYSVSDTGIGIPEEARHRLFRQFEQTDPSVSRRFGGTGLGLAIVRRIVEAFGGELGV 695

Query: 795 FSTPAKGTLIEIIFPLYDTS 814
            S   KG+      P  + S
Sbjct: 696 VSETGKGSTFWFEIPHVEPS 715


>gi|166366349|ref|YP_001658622.1| two-component sensor histidine kinase [Microcystis aeruginosa
           NIES-843]
 gi|166088722|dbj|BAG03430.1| two-component sensor histidine kinase [Microcystis aeruginosa
           NIES-843]
          Length = 665

 Score =  308 bits (789), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 82/432 (18%), Positives = 174/432 (40%), Gaps = 52/432 (12%)

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINK--RKMEIEVMQLCSILEATSDGIAIINREGI 473
           +      +  E +       E ++    +   +M  E  +L +++   +DG  +++    
Sbjct: 238 VDLPLGGELGELILSFNEMAEKLERYEEQNIEEMTAEKAKLDTLMSTIADGAILLDTNFQ 297

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE------- 526
           +L  N A  ++FG+   +I+ +             +   L +I + +  Q  E       
Sbjct: 298 LLLINPAAREIFGWEDREIIGQNVLHLFPSELTVRLTKPLYQIAAGETLQPEESANQNHH 357

Query: 527 -----------------KITLGSTKEEKLLSLRIIIK---KLPFSSCYSLTMHDISEWKQ 566
                                 +  + + + L +              ++T+ DI+    
Sbjct: 358 PKNAVIDQENNNYSPAEFRLSLTNPKTRTIRLLLTQVFDQHRENVRGIAMTLQDITR--- 414

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
                        + +  KS F++ VSHE+RTPL  I  F E +  +    L +    E+
Sbjct: 415 -----------ETELNEAKSQFISNVSHELRTPLFNIKSFIETL-TEFGEDLSDTEKREF 462

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
               +   + +  +VND+LD+S++ES + N + + + + + + + +   QL A +K + +
Sbjct: 463 LETANHETDRLTRLVNDVLDLSRLESSR-NYNLDAIDIGQLIEQTLRTYQLNARDKGLEL 521

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH------TSNEEVILR 740
            +    N+  IL     + Q+  N++ N++ FTP+GG+++I              ++ + 
Sbjct: 522 SSEIEANLLPILGHYDLLLQVLTNLVGNSLKFTPAGGKVVIRAYKISRDNPQETPKIRVE 581

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V DTG+G+   +       F ++ N +    EGTGLGL + K +++ +  +  + S    
Sbjct: 582 VSDTGIGIDAEDQSAIFDRFYRVEN-RVHTLEGTGLGLSIVKNIIEKHYSQINLISEVGI 640

Query: 801 GTLIEIIFPLYD 812
           GT       LY 
Sbjct: 641 GTTFWFDLDLYQ 652


>gi|88858788|ref|ZP_01133429.1| probable sensor/response regulator hybrid [Pseudoalteromonas
           tunicata D2]
 gi|88819014|gb|EAR28828.1| probable sensor/response regulator hybrid [Pseudoalteromonas
           tunicata D2]
          Length = 1483

 Score =  308 bits (789), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 93/510 (18%), Positives = 200/510 (39%), Gaps = 22/510 (4%)

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIA 363
                  +   ++  N     ++            G +     S  LL  ++    I   
Sbjct: 473 ESKVTEQTQLLEQKSNFQKSVLNSSQNAIIATDKEGVITLFTQSAALLLGFEEAQVIAKK 532

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
             +S L+ + K +       + + ++  +       L   Q      + ++    +  ++
Sbjct: 533 NIMS-LISSDKSTLKQDTFKLWVDKTTDSTCP---SLCFFQTKDGLDIPVSITISDILDE 588

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
             E      +     + +     +E  +  + + L+ + D +  ++  G +L +N     
Sbjct: 589 HSELSGYLIVADNLTEKKS----LEHHISLVNAALDNSQDMLLWLDESGHLLHSNPYACV 644

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           L  Y   +  ++     L+        H   +I+     Q L             + + I
Sbjct: 645 LLEYTQNNFNQQNIHTLLKFEQGENWAHLKQKIIKT---QRLSCERNFLKATGTTIPMLI 701

Query: 544 IIKKLPFSSCYSLTM--HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
               L       +     +I+E  +E+ +L  A   A+  S  K+DF+A +SHE+RTPL 
Sbjct: 702 SASVLTIDKKTIIYFAAKNITERLKEEAELKLALHQADAASKIKTDFIANMSHELRTPLN 761

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           AI G  ++++  +         +   +        +   +ND++D++ +E G++ L  + 
Sbjct: 762 AINGLLQILELSKL----TQEQLSTLDSAKAEVIGLNQTINDIMDLTSVERGELILEEQD 817

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTP 720
            +LDE ++   + +   A++K I I  S   ++P  +  D   +KQI  NI SNA+ F+ 
Sbjct: 818 FNLDELLNTIGTQLNTLADDKPIEIHFSLTEDLPLAMHGDANKLKQILWNIASNAVKFSL 877

Query: 721 SGGQI---IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
            G  +    ++ ++ ++  + + + DTG+G+   +LE+    F Q+ NS   +  G G+G
Sbjct: 878 KGEVVLSFSVTISNRNSFWLNIAISDTGIGVNQDKLEQIFDLFTQVDNSNTRQYGGLGIG 937

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           L +A  +V    G   + S    G+     
Sbjct: 938 LTIASQLVKLMGGSIKVCSQLDAGSTFSCS 967



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 53/426 (12%), Positives = 127/426 (29%), Gaps = 47/426 (11%)

Query: 169 YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228
              ++EF G RGFG++        P  L +   ++        K   S +   + I   +
Sbjct: 100 RDYHKEFPGARGFGVIKKISKKQLPEFLAQANAERSKPFE--LKQLDSPQDLLFIIQYIE 157

Query: 229 SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288
               +L+                       +  LT   + +   E      L        
Sbjct: 158 PEEFNLQAIGLDIGSESNRRFAAITSAASGFAQLTGPITLMQADEQKLHGFLLLLPIF-- 215

Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSF 348
                                          N     +     P  +    ++   N   
Sbjct: 216 -----------------------------SNNDQHTLLGWVFSPLLINEILDVVADNNVH 246

Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
             +       +I  +    + L      D        + +++   I       +I    +
Sbjct: 247 FKI-------EIADSYLNESTLFYAGDIDTTTKSAFKISKTN--SIYGRQWNISITPTND 297

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL--CSILEATSDGIA 466
              ++ +    +       +    +      T++  R++EI   +L   ++++  S+ I 
Sbjct: 298 FIHSLNYRDPTQVYFQIIALTFIALVFVFFLTQLIARRIEIIKQKLSYETVVKNASESII 357

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE-QNTPSVMNHYLTEILSLDLRQTL 525
            ++    IL  N +   LF +  ++   KP   +L        +     ++   +    +
Sbjct: 358 GVDAYFAILHWNASADHLFQFTQKNAQHKPLINWLSLFINHDKLIAIYKQVARGEQITNM 417

Query: 526 EKITLG--STKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
               +G  ST ++ LL   I + +       ++++ DI+  K  + +L +  K  E + +
Sbjct: 418 AFSHMGIESTSDKFLLLNFIPMVRAGTFIGATISISDITAIKTLQTQLENHNKQLESKVT 477

Query: 584 HKSDFL 589
            ++  L
Sbjct: 478 EQTQLL 483



 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/302 (11%), Positives = 93/302 (30%), Gaps = 32/302 (10%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDD-IEIAGGL 366
            +      + +      V         V ++  + + N S   L ++   +   +     
Sbjct: 332 IARRIEIIKQKLSYETVVKNASESIIGVDAYFAILHWNASADHLFQFTQKNAQHKPLINW 391

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
            +L       D        + R ++    A + +  I+   +  L + FIP     +   
Sbjct: 392 LSLFIN---HDKLIAIYKQVARGEQITNMAFSHMG-IESTSDKFLLLNFIPMV---RAGT 444

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCS------------------ILEATSDGIAII 468
            +       +    +  + ++E    QL S                  +L ++ + I   
Sbjct: 445 FIGATISISDITAIKTLQTQLENHNKQLESKVTEQTQLLEQKSNFQKSVLNSSQNAIIAT 504

Query: 469 NREGIILSTNRAVSKLFGYPVEDILR-KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
           ++EG+I    ++ + L G+    ++  K     +  +  ++        +      T   
Sbjct: 505 DKEGVITLFTQSAALLLGFEEAQVIAKKNIMSLISSDKSTLKQDTFKLWVDKTTDSTCPS 564

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
           +    TK+   + + I I  +         Y +   +++E K  ++ +S      +    
Sbjct: 565 LCFFQTKDGLDIPVSITISDILDEHSELSGYLIVADNLTEKKSLEHHISLVNAALDNSQD 624

Query: 584 HK 585
             
Sbjct: 625 ML 626


>gi|319777865|ref|YP_004134295.1| pas sensor protein [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317171584|gb|ADV15121.1| PAS sensor protein [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 643

 Score =  308 bits (789), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 90/518 (17%), Positives = 180/518 (34%), Gaps = 39/518 (7%)

Query: 317 EGENLTPETVDKCPI--PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
             E+     V+       + +   G +   N        Y + + I      S       
Sbjct: 14  ADEDRYRVLVEAVTDYAIYMLDRSGTVTSWNAGAERFKGYSASEIIGQ--HFSCFYTEED 71

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
                  + +     D            ++ +     A   +     +   +      + 
Sbjct: 72  REAGLPSRTLETAVRDGK---FVTEGWRVRRDGTPFWA-HVVVDPILDPSGQLTGFAKVT 127

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDIL 493
            +  + +  + ++     Q   +++  +D  I +++ EG+I S N    ++ GY  ++I+
Sbjct: 128 RDLTERKKAEEEIRKNQEQFQRLVQGVTDYAIYMLDPEGVITSWNSGAERIKGYSADEII 187

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553
            K F+ F         +   + +        +E+      K+       ++I  +     
Sbjct: 188 GKHFSQFYTPEDRERGSPQ-SALEIAAREGRVEREGWRIRKDGTAFWSHVVIDAIRHEDG 246

Query: 554 ----YSLTMHDISEWKQEKNKLSHAKKIAEKESS--HKSDFLARVSHEIRTPLTAIIGFS 607
               ++    DI+E K+ +  L  A++                 V+H+    L AI+G  
Sbjct: 247 ELLGFAKITRDITERKKAQESLDQAREALFHSQKMDAIGKLTGGVAHDFNNLLMAILGSL 306

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
           E+++ +      +P+ +   +           +   +L  ++    +  L  +PV L   
Sbjct: 307 ELLRKRL---PDDPQLLRLLDNAVLGARRGASLTQRMLAFAR----RQQLDPKPVDLIGL 359

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727
           +     L++     + I I T F  ++ R++ D   ++   LN+  NA    P GG I+I
Sbjct: 360 IHGMKDLLERSLGSRAI-IETKFPLSLDRVMVDESQIELALLNLCVNARDAMPGGGTIVI 418

Query: 728 STTHTSNEE-----------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
           ST      E           V L V D G GM    L +A +PF          G+GTGL
Sbjct: 419 STRMEQVGESKEAGLAPGPYVCLSVADAGEGMDEETLARATEPFFTTKG----VGKGTGL 474

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           GL +   M +   G+  + S    GT  E+  P+   S
Sbjct: 475 GLSMVHGMTEQMGGRLTLRSRKGAGTTAELWLPVAIAS 512



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/380 (9%), Positives = 105/380 (27%), Gaps = 18/380 (4%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + +D  G +   +    +  G  A ++IG            +       L         
Sbjct: 31  IYMLDRSGTVTSWNAGAERFKGYSASEIIGQHFSCFYTEEDREAGLPSRTLETAVRDGKF 90

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
            T  W +          +   PI   + + +GF    +              ++  ++F 
Sbjct: 91  VTEGWRVRRDGTPFWAHVVVDPILDPSGQLTGFAK--VTRDLTERKKAEEEIRKNQEQFQ 148

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHL---RMKNKVSS--LTEYYAHKDDVLKTEKYP 260
            L +    ++    +   + +  +           +++     +++Y  +D    + +  
Sbjct: 149 RLVQGVTDYAIYMLDPEGVITSWNSGAERIKGYSADEIIGKHFSQFYTPEDRERGSPQSA 208

Query: 261 LLTSEESSLPEQEDFH-TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
           L  +      E+E +    +   +        +++   E   +       +      E  
Sbjct: 209 LEIAAREGRVEREGWRIRKDGTAFWSHVVIDAIRHEDGELLGFAKITRDITERKKAQESL 268

Query: 320 NLTPETVDKCP--IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
           +   E +            + G     N   + +    S++ +        L D P+L  
Sbjct: 269 DQAREALFHSQKMDAIGKLTGGVAHDFNNLLMAILG--SLELLRK-----RLPDDPQLLR 321

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
                 +   R         A     Q + +  + +  +     +    ++    I    
Sbjct: 322 LLDNAVLGARRGASLTQRMLAFARRQQLDPKP-VDLIGLIHGMKDLLERSLGSRAIIETK 380

Query: 438 VDTRINKRKMEIEVMQLCSI 457
               +++  ++   ++L  +
Sbjct: 381 FPLSLDRVMVDESQIELALL 400



 Score = 71.6 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 38/416 (9%), Positives = 89/416 (21%), Gaps = 30/416 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK---RQNT 142
            + +D  G +   +    +  G  A ++IG            +        L+   R+  
Sbjct: 159 IYMLDPEGVITSWNSGAERIKGYSADEIIGKHFSQFYTPEDRER-GSPQSALEIAAREGR 217

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
              +      +GT  +  + + A  I   + E  GF    I          +    +  +
Sbjct: 218 VEREGWRIRKDGTAFWSHVVIDA--IRHEDGELLGFAK--ITRDITERKKAQESLDQARE 273

Query: 203 KFSHLHEIKKGHSSVEKEKYD-------IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255
              H  ++           +D       I             +         A       
Sbjct: 274 ALFHSQKMDAIGKLTGGVAHDFNNLLMAILGSLELLRKRLPDDPQLLRLLDNAVLGARRG 333

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
                 + +             +    +  K        +               +    
Sbjct: 334 ASLTQRMLAFARRQQLDPKPVDLIGLIHGMKDLLERSLGSRAIIETKFPLSLDRVMVDES 393

Query: 316 DEGENLTPETV---DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                L    V   D  P    +     +     S            + +A     + D 
Sbjct: 394 QIELALLNLCVNARDAMPGGGTIVISTRMEQVGESKEAGLAPGPYVCLSVADAGEGM-DE 452

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
             L+               T +  S      +         +        +    +    
Sbjct: 453 ETLARATEPFFTTKGVGKGTGLGLSMVHGMTEQMGGRLTLRSRKGAGTTAELWLPVAIAS 512

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
            E       + +             +E  S  I  ++ + ++L    A+ +  G+ 
Sbjct: 513 SEVARGPDVLAEEA-----------IETASLRILAVDDDALVLLNTAAMLEDLGHT 557


>gi|253686706|ref|YP_003015896.1| multi-sensor hybrid histidine kinase [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251753284|gb|ACT11360.1| multi-sensor hybrid histidine kinase [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 789

 Score =  308 bits (789), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 91/440 (20%), Positives = 183/440 (41%), Gaps = 21/440 (4%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L             L+  Q     +     I      +    +  + ++ E
Sbjct: 81  EESRQRLSKLVAKLEEMRHRDLELNE-QLQENIAQLNQEIADRIKAEDARVLVMSRLKEE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
                  + ++E +   L S L+A+ D +   N +      NRA+  L G   + ++   
Sbjct: 140 MSRREQAQIELEQQSALLRSFLDASPDLVYYRNEDKEFSGCNRAMELLVGKSQKQLIGLT 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII--KKLPFSSCY 554
                  +    +     ++   ++  T E+  +     +    LR +    ++      
Sbjct: 200 PQDVYSPDIAEKVMETDEKVFRHNVSLTYEQWLVYPDGRKACFELRKVPFYDRMGKRHGL 259

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+ ++ L +        S  K+ F++ +SHE+RTPL  I+G S ++ + +
Sbjct: 260 MGFGRDITERKRYQDALEN-------ASREKTTFISTISHELRTPLNGIVGLSRILLDTQ 312

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                +P   +Y   I  S   + +I ND++++ K E  K+ L  +P+     + +  +L
Sbjct: 313 L----DPEQQKYLKTIHVSAITLGNIFNDVIEMDKQERRKVQLDNQPIDFTGFLVDLENL 368

Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSG-----GQIIIS 728
             L A  K + +       +P+ ++ D   ++QI  N+LSNA+ FTP G     G+I++ 
Sbjct: 369 GGLLAEPKGLKLIMDQHYPLPQKVITDGTRLRQILWNLLSNAVKFTPKGENGEKGEIVVR 428

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDA 787
             H   + +   V D+G+G+   ELEK    + Q+ +    +   GTG+GL ++K +   
Sbjct: 429 VWHEKGDRLSFEVEDSGMGIPADELEKIFAMYYQVKDQHGGKPATGTGIGLAVSKRLAQN 488

Query: 788 NMGKFYIFSTPAKGTLIEII 807
             G   + ST  KG+   + 
Sbjct: 489 MGGDIQVSSTQGKGSCFTLT 508



 Score = 45.4 bits (106), Expect = 0.037,   Method: Composition-based stats.
 Identities = 24/226 (10%), Positives = 49/226 (21%), Gaps = 10/226 (4%)

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHT--INLNQYTKKQYFGTLQNNSK 297
           +S + E        L      L       L   E        LNQ    +          
Sbjct: 73  LSVVVEQLEESRQRLSKLVAKLEEMRHRDLELNEQLQENIAQLNQEIADRIKAEDARVLV 132

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKS 356
            S                ++   L    +D  P   +  +        N +  LL     
Sbjct: 133 MSRLKEEMSRREQAQIELEQQSALLRSFLDASPDLVYYRNEDKEFSGCNRAMELLVGKSQ 192

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
              I        L      S + A K +           +      + +           
Sbjct: 193 KQLIG-------LTPQDVYSPDIAEKVMETDEKVFRHNVSLTYEQWLVYPDGRKACFELR 245

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
                ++  +     G   +  + +  +  +E    +  + +   S
Sbjct: 246 KVPFYDRMGKRHGLMGFGRDITERKRYQDALENASREKTTFISTIS 291



 Score = 40.4 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 37/124 (29%), Gaps = 5/124 (4%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN-TWYGKTTLWPIE 153
               +  +   +G    ++IG+   DV      +      + + R N +   +  L   +
Sbjct: 177 FSGCNRAMELLVGKSQKQLIGLTPQDVYSPDIAEKVMETDEKVFRHNVSLTYEQWLVYPD 236

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
           G       +L  +P Y R  +  G  GFG           +   +   ++ +        
Sbjct: 237 GRKACF--ELRKVPFYDRMGKRHGLMGFG--RDITERKRYQDALENASREKTTFISTISH 292

Query: 214 HSSV 217
               
Sbjct: 293 ELRT 296


>gi|75674318|ref|YP_316739.1| Signal transduction histidine kinase [Nitrobacter winogradskyi
           Nb-255]
 gi|74419188|gb|ABA03387.1| signal transduction histidine kinase [Nitrobacter winogradskyi
           Nb-255]
          Length = 754

 Score =  308 bits (789), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 94/368 (25%), Positives = 163/368 (44%), Gaps = 16/368 (4%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           +++    +   + E+ SD I + +  G+I S N A   L      ++L   F        
Sbjct: 103 ELKEAEERARHLFESQSDLIVLRDGGGVITSVNEAYCILAQRSRTELLGSRFA------- 155

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISE 563
             V+    + I S   R   +++        + ++ R  + ++             D+++
Sbjct: 156 LPVLEQGESAIESNGTRVYDQRVETARGP--RWIAWREALMRIDADHPAELQCVGRDVTD 213

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
               +  L+ A+  A + S  KS FLA  SHE RTPL  IIG S          L  P  
Sbjct: 214 RTDSERALAEARDRANEASQAKSRFLAMTSHEFRTPLNGIIGMS----GLLLETLLTPEQ 269

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
             Y   +  SG+ +L ++ DLLD S+IE+GK+ L   P  L + + +   L+   A  ++
Sbjct: 270 TTYVKAVKASGDALLSLIEDLLDYSRIEAGKVELECRPFVLSDLIEDITELLAPRAQARQ 329

Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           + I +     +P  ++ D   ++Q+ LN+  NAI FT SGG  +I        ++   VR
Sbjct: 330 LEIASYVDETLPAEVIGDAARLRQVLLNLAGNAIKFTSSGGVALIVVPGIRPGDIRFMVR 389

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG+G+      +  + F Q  +       G+GLGL ++  +V    G+  + S P  G+
Sbjct: 390 DTGIGIAPDAQARIFREFEQADDQIIRSYGGSGLGLSISDRIVKRMGGRITLQSKPDSGS 449

Query: 803 LIEIIFPL 810
             E++ PL
Sbjct: 450 TFEVLVPL 457



 Score = 38.9 bits (89), Expect = 3.5,   Method: Composition-based stats.
 Identities = 37/398 (9%), Positives = 92/398 (23%), Gaps = 33/398 (8%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D  G +  ++E           +++G R      +  ++        ++   T      +
Sbjct: 126 DGGGVITSVNEAYCILAQRSRTELLGSRF----ALPVLEQGES---AIESNGTRVYDQRV 178

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
               G       +           E        +        D          + +   +
Sbjct: 179 ETARGPRWIAWREALMRIDADHPAELQ-----CVGRDVTDRTDSERALAEARDRANEASQ 233

Query: 210 IKKGHSSVEKEKYD-----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
            K    ++   ++      I           +  + ++  +      D L +    LL  
Sbjct: 234 AKSRFLAMTSHEFRTPLNGIIGMSGLLLETLLTPEQTTYVKAVKASGDALLSLIEDLLDY 293

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
                 + E      +     +     L   ++     ++     +L A          +
Sbjct: 294 SRIEAGKVELECRPFVLSDLIEDITELLAPRAQARQLEIASYVDETLPAEVIGDAARLRQ 353

Query: 325 TVDKC--PIPFFVYSHGNLFYANPSFL---LLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
            +         F  S G      P      +    +           + +    + +D+ 
Sbjct: 354 VLLNLAGNAIKFTSSGGVALIVVPGIRPGDIRFMVRDTGIGIAPDAQARIFREFEQADDQ 413

Query: 380 AIKP-----VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG-- 432
            I+      + L  SDR       R+         S     +P    ++ PE        
Sbjct: 414 IIRSYGGSGLGLSISDRIVKRMGGRITLQSKPDSGSTFEVLVPLPAQDRAPERKRFTAPD 473

Query: 433 ----IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
                        I    +   + +  + +   SD   
Sbjct: 474 LTGQPVMLVAPQAIETSLLARRLERWGAEICTASDLTV 511


>gi|170737005|ref|YP_001778265.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia cenocepacia
           MC0-3]
 gi|169819193|gb|ACA93775.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia cenocepacia
           MC0-3]
          Length = 1194

 Score =  308 bits (789), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 111/651 (17%), Positives = 231/651 (35%), Gaps = 35/651 (5%)

Query: 184 VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL 243
             V R   D                   +  + +       F+ +S  P        +++
Sbjct: 184 AKVLRQLPDAEIAVATNAYHAMQQVADGRADAYLGNAAIVDFNIRSYFPGALKIASPANI 243

Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSLPEQE--------DFHTINLNQYTKKQYFGTLQNN 295
               +   +       PL+ +  +++P+ E         +   +     K      L   
Sbjct: 244 ESRLSISINRRYERLLPLINNAIAAMPKMEQQRIRSRWLWPRYSAGLPWKTFELTLLGAA 303

Query: 296 SKESFEYLS-------HRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPS 347
              +   ++        R   ++     +  +     ++  P P     S       N +
Sbjct: 304 IILAIVTIAYVRLRHEARQRLAVEHELADQLSFREALMESLPYPLAAKDSANRYIALNHA 363

Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
           +      K  +D+     L  L   P  S    ++   +    +    A      +    
Sbjct: 364 YETAFSVKR-EDLIGRTTLEALPVEPAWS----MQIHTMSEQVQDQNRAHHAEVNLLDGD 418

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
               +  +          +         +    R  +++      +L  +       +  
Sbjct: 419 HKLRSWLYWMHPFQLPSGKPGGLLVTLVDVTTIRDAEQRARALDQRLRRVTSHLPVVVFE 478

Query: 468 I----NREGIILSTNRAVSKLFGYPV--EDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
                +              ++       +         +  +   ++   +        
Sbjct: 479 FRRTPDGALRFPYVGGDTRAMWDLDALSMEADALTALSRVHPDDRPLIKSAVKYSALTMT 538

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE 581
             +++   +   +E  + +      +L  +  +S    D++  K +  +L+ AK+ AE  
Sbjct: 539 PISIDFRCVSHGRERWIHTDATPQTELNGTMFWSGVWSDVTHAKAQAEELARAKEAAEIA 598

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
           ++ KS FLA +SHEIRTP+  IIG  E+++++              + I  S   ++ I+
Sbjct: 599 AASKSRFLATMSHEIRTPMNGIIGMLELLRHESLSTN----QQRMLHMIGESAMTLMQIL 654

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI-PRILAD 700
           +D+LD SKI++G + +  EP  L   V    ++    A++K +++R S ++ +   +  D
Sbjct: 655 DDVLDFSKIDAGHLEILTEPTDLRALVDGVSAIAATLAHDKGLVVRNSVSSQLSAELKVD 714

Query: 701 LRSVKQIALNILSNAIHFTPSGGQ-IIIST--THTSNEEVILRVRDTGVGMTNYELEKAM 757
              ++QI +N++SNAI FT +G   I IS      + + V   V DTG+G+   +L+   
Sbjct: 715 GLRLRQILINLISNAIKFTENGEVGIDISVFDQREACQRVHFTVHDTGIGIAPAQLQCLF 774

Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            PF Q  +S   R  GTGLGL + K +V+   G  +I STP  GT + +  
Sbjct: 775 APFTQADSSIVRRFGGTGLGLAICKRLVELMHGSVHIESTPGFGTRVTVKL 825


>gi|227358257|ref|ZP_03842598.1| histidine kinase [Proteus mirabilis ATCC 29906]
 gi|227161593|gb|EEI46630.1| histidine kinase [Proteus mirabilis ATCC 29906]
          Length = 778

 Score =  308 bits (789), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 85/436 (19%), Positives = 178/436 (40%), Gaps = 17/436 (3%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   +             L++        L +      +  +         ++ E
Sbjct: 81  EESRRRLSRMVDKLGVMRQRDLELNSQLKENIEQLNLEIQ-EREKVEKAHLELLEKLKSE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
                + + ++E +   L S L+A+ D +   N +      NRA   L G   + ++   
Sbjct: 140 MKRRELTQIELEQQSSLLRSFLDASPDLVYYRNEDNEFSGCNRATELLTGKSEKQLIGLT 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII--KKLPFSSCY 554
                +++    +     ++   ++  T E+  +     +    LR +    ++      
Sbjct: 200 PLDVYDEDIAVKVMETDEKVFRHNVSLTYEQWLVYPDGRKACFELRKVPFYDRIGKRHGL 259

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+ ++ L +        S  K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 260 MGFGRDITERKRYQDALEN-------ASRDKTTFISTISHELRTPLNGIVGLSRILLDTE 312

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
             P      + Y   I  S   + +I ND++++ KIE  K+ L  +P+   E +S+  +L
Sbjct: 313 LSP----EQLNYLKTIHVSAITLGNIFNDVIEMDKIERRKIQLDNQPIDFTEFISDLENL 368

Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
             L    K +         +P  I  D   ++QI  N++ NA+ FT  G +I +     +
Sbjct: 369 SGLLVQPKGLKFTLEAQETLPHKITTDGTRLRQILWNLIGNAVKFTQEG-EIKVRIWQEA 427

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQI-PNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
            +++   V+D+G+G+   ELEK    + Q+  +       GTG+GL ++K +     G  
Sbjct: 428 PDKLFFEVKDSGIGIPQGELEKIFAMYYQVNDSQGGRSATGTGIGLAVSKRLAQHMGGDI 487

Query: 793 YIFSTPAKGTLIEIIF 808
           ++ S    G++  +  
Sbjct: 488 HVESELGHGSIFTLSI 503


>gi|189467150|ref|ZP_03015935.1| hypothetical protein BACINT_03534 [Bacteroides intestinalis DSM
           17393]
 gi|189435414|gb|EDV04399.1| hypothetical protein BACINT_03534 [Bacteroides intestinalis DSM
           17393]
          Length = 806

 Score =  308 bits (789), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 104/521 (19%), Positives = 197/521 (37%), Gaps = 36/521 (6%)

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEI 362
           +           D  E +        P+   +Y   G L   N   L +     + +   
Sbjct: 306 AELQAKEDRRALDHSEKILRNIYKNLPVGIELYDKDGYLVDMNDKELEIFGLADMKEALG 365

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL----HTIQWNRENSLAMTFIPF 418
                +L + P + ++   K   L   +    + +         +   R++ + +     
Sbjct: 366 V----SLFENPNIPEDVKEK---LRARENVDFSINYDFSKIDRYVTSRRKDIINLQTKVA 418

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN---REGIIL 475
              +   +      I  +  +T     K++        I +    G A  N   R+G   
Sbjct: 419 LLYDSQNQFSNYLFINIDTTETTSAYTKIQEFEHLFLLIGDYAKVGFAHFNVMTRDG--- 475

Query: 476 STNRAVSKLFGYPVEDILRKPF--TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
                  +  G      + +       +     +V+  ++ ++       +L K    + 
Sbjct: 476 YAQDTWYRNLGEKENTPMPQVIGVYSHVHPEDCAVLKLFVDQVKE-GKATSLSKEVRVNR 534

Query: 534 KEEKLLSLRIII-----KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
              K     I +     +            +DI+  K+ + KL  A+  AE+    KS F
Sbjct: 535 GNGKYSWTSINVMVRDYRPQDGVIEMLCINYDITPLKETEQKLIIARDKAEELDRLKSAF 594

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
           LA +SHEIRTPL +I+GFS ++              EY   ++ +  L+L +V+D+LD+S
Sbjct: 595 LANMSHEIRTPLNSIVGFSSLLAETD----DREERQEYIKIVETNNELLLQLVSDILDLS 650

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIA 708
           KIESG  +     + ++E+  + I  +++   E  + +          I  D     Q+ 
Sbjct: 651 KIESGTFDFVRSDLDVNESCMKIIKSLEMKVPE-TVDLVFEKYMPDCHIYTDKNRFMQVI 709

Query: 709 LNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
            N ++NA+ FT  G  I +    T+  E+   VRDTGVG+   +++   + F ++     
Sbjct: 710 TNFINNALKFTKQG-TIALGYEQTAPHEIKFYVRDTGVGIPKEKIDSIFERFVKLNTF-- 766

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
              +GTGLGL + K++V    GK  + ST  +G+      P
Sbjct: 767 --VQGTGLGLSICKSLVSQMGGKIGVESTEGEGSCFWFTHP 805


>gi|269103459|ref|ZP_06156156.1| aerobic respiration control sensor protein ArcB [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268163357|gb|EEZ41853.1| aerobic respiration control sensor protein ArcB [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 788

 Score =  308 bits (789), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 86/403 (21%), Positives = 163/403 (40%), Gaps = 19/403 (4%)

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
           I   +  +    +    +E E       + ++  +   L S L+A+ D I   N +    
Sbjct: 119 IDERQKAEEARELAMEDLENEVYHREKAQLELAEQSALLRSFLDASPDLIYYRNEKNQFS 178

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
             NRA+S+L G   ++++             + +      +   D+  T E+        
Sbjct: 179 GCNRAMSELVGKSEKELVGLTPWDVYNPELATKIAKTDQRVFDEDVSLTYEQWLEYPDGR 238

Query: 536 EKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
           + +  LR +                 DI+E K+ +          EK S  K+ F++ +S
Sbjct: 239 KAVFELRKVPFYSRSGRRLGLMGFGRDITERKRYEE-------AQEKASRDKTSFISTIS 291

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HE+RTPL  I+G S ++               Y   I  S   + +I ND++D+ K +  
Sbjct: 292 HELRTPLNGIVGLSRMLLESEL----TEDQRNYLRTIHISAITLGNIFNDIIDLDKSDRR 347

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNIL 712
           ++ L  +P+ L E ++E  ++  L A +K +         +P  I  D   ++Q+  N++
Sbjct: 348 RLELLPKPLDLPEFITEIGNISALMAEQKGLRFDLEQLTQLPKMIEVDGTRLRQVLWNLM 407

Query: 713 SNAIHFTPSGGQI-IISTTHT-SNEEVILRVRDTGVGMTNYELEKAMKPFGQIP-NSQQI 769
            NA  FT  GG I  +S         +   V D+G+G+   EL+     + Q+      +
Sbjct: 408 GNATKFTKQGGVILSVSCEVEADQAHIQFEVEDSGIGIPAGELDNIFAMYYQVQQGDDNL 467

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI--IFPL 810
              GTG+GL +++ +V    G   + S   +G+   +    P+
Sbjct: 468 HAVGTGIGLAVSRQLVQLMNGDITVSSEEGEGSTFTVNITVPI 510



 Score = 48.9 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/124 (12%), Positives = 35/124 (28%), Gaps = 5/124 (4%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPIE 153
               +  + + +G    +++G+   DV +             +     +   +  L   +
Sbjct: 177 FSGCNRAMSELVGKSEKELVGLTPWDVYNPELATKIAKTDQRVFDEDVSLTYEQWLEYPD 236

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
           G       +L  +P YSR+    G  GFG               ++  +  +        
Sbjct: 237 GRKAVF--ELRKVPFYSRSGRRLGLMGFG--RDITERKRYEEAQEKASRDKTSFISTISH 292

Query: 214 HSSV 217
               
Sbjct: 293 ELRT 296


>gi|229917679|ref|YP_002886325.1| histidine kinase [Exiguobacterium sp. AT1b]
 gi|229469108|gb|ACQ70880.1| histidine kinase [Exiguobacterium sp. AT1b]
          Length = 651

 Score =  308 bits (789), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 86/433 (19%), Positives = 172/433 (39%), Gaps = 36/433 (8%)

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
           + R            ++ +   E        P    ++                    + 
Sbjct: 236 VRRLTGQLQ--ELIENSKRLAGER---QPITPAAAQSKNEVGQLTTSFRQMATSLTTQRY 290

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF----- 500
           ++E E  +   +L +  D +  +         N+A+  LF  P+                
Sbjct: 291 RIEEEREKTARLLHSIRDAVIYVEHATSEKVANQALFVLFNQPITKRNEVDLYRLDASLE 350

Query: 501 ---LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-CYSL 556
              L+ +       ++        ++  E +T    +EE+ + +      L  +     L
Sbjct: 351 ELGLQVDQKDAFFAFMERSFDGQCKE--ESVTFSMNQEERFIQMYAEKIYLRGTRHGTML 408

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
              D++                 +    K++ ++ VSHE+RTPLT+IIGF+E++   RF 
Sbjct: 409 VFRDVTH--------------ETEVDRLKTELVSTVSHELRTPLTSIIGFTELL---RFR 451

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
            L   R  +Y   I +    + D++++LLD+ ++ESG+   H EP  L   + +AI++ Q
Sbjct: 452 KLSAERSEKYLGMIHQETLRLEDLISNLLDVQRMESGQQTYHNEPERLSAILEQAIAVHQ 511

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
             +    I        ++  +  D   + Q+ +N+L NA+ ++P GG+I +       + 
Sbjct: 512 GSSQHHHITF--DCTEDV-YVYGDRTRLNQLFMNLLHNAVKYSPRGGEINVRVACERPDW 568

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           + + + D G+G+    L K    F ++ NS   +  GTGLGL + K + + + G  +  S
Sbjct: 569 IDISIEDHGIGIPQTALPKLFDKFYRVDNSASRKIGGTGLGLAICKEIAEGHGGTIHATS 628

Query: 797 TPAKGTLIEIIFP 809
              KG++  +  P
Sbjct: 629 NIGKGSMFTVSLP 641


>gi|256830426|ref|YP_003159154.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfomicrobium baculatum DSM 4028]
 gi|256579602|gb|ACU90738.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfomicrobium baculatum DSM 4028]
          Length = 602

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 103/608 (16%), Positives = 198/608 (32%), Gaps = 42/608 (6%)

Query: 220 EKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTIN 279
               I       P   +   +   +E  A    V        + S  S    ++    + 
Sbjct: 15  AFGVILFLALGVPAYYLHQNLGQTSEREARDGAVRDLRSVEWMLSSGSFHDLEQVNEALR 74

Query: 280 LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-- 337
                       +  + +   +                   +T     +  +        
Sbjct: 75  ELAARMDIRITFMTLDGRVLTDSGVTAQRVESLENHLGRPEVTQALGGEVGVGLRYSDTL 134

Query: 338 HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397
              L YA      +    S    E    ++      + S +                A  
Sbjct: 135 GQELLYA-----AMRTQASGVLPEGVVRIARPQSQIRKSLDRLYGQAGWVYGLGVVFAFG 189

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM----- 452
               T +       ++     +     P    +     E     +    M   +      
Sbjct: 190 LVSLTSRQVGRAIASVAQAAADIGQGEPGKRIRFSPSTELTPLVVAFNNMVERIESNMQT 249

Query: 453 ------QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
                 +  ++L     G+ +++  G IL  N A  ++F         KP  + L Q+  
Sbjct: 250 IVKQKMESEAVLNGMKAGLIVLDGNGRILRGNYAAQEIFPGLSTFAGHKPMELSLLQDLQ 309

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQ 566
              +  L + L  D  Q      + S    +   + I+  K        +  HDI+E K+
Sbjct: 310 DACDAALKKRLEGDFSQVG---VMVSLAGGRNFDVSIVPIKGDAELGVIMVFHDITEIKR 366

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
            +                + DF+A VSHE+RTPLT+I G++E +           +   +
Sbjct: 367 VE--------------QIRRDFVANVSHELRTPLTSIKGYAETLVG--IDKYDPEQTRSF 410

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
              I R+ N +  ++++LL +S++E GK+ L    V    AV  A          K I  
Sbjct: 411 LEVILRNANHMNTMLDELLQLSRLEHGKLRLDLVSVEPASAVYSAWKSCHPL--SKNIEF 468

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
            +    + P + A+   + Q+  N+  NAI + P    +I    HTS  E+++ + D G 
Sbjct: 469 TSELDASTPAVRANFEQLVQVFRNVFENAIKYVPEETAVIRVHGHTSGPELVVFIEDNGP 528

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS---TPAKGTL 803
           G+   +  +  + F ++   +     GTGLGL +++ ++  + G+  + S       G+ 
Sbjct: 529 GIPAEDQTRIFERFYRVEKDRNSSIGGTGLGLAISRHIMANHGGRITVQSPVPETGIGSR 588

Query: 804 IEIIFPLY 811
             I  PL 
Sbjct: 589 FIITLPLA 596


>gi|115522390|ref|YP_779301.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisA53]
 gi|115516337|gb|ABJ04321.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisA53]
          Length = 749

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 96/406 (23%), Positives = 172/406 (42%), Gaps = 24/406 (5%)

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469
           +LA+  I               G+   +        ++E    +  + LE+  D I + +
Sbjct: 64  ALAVAEIAVLWGEVVRLRRDHAGLAQRNERLADRNWELEESEYRARNALESQGDLIVLRD 123

Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
             G I   N A   L G     ++   F + + +     +    T++    +        
Sbjct: 124 NHGRIAFANDAFCALAGEHRAALIGARFALQVIEQGGETIEADGTKVYDQKIA------- 176

Query: 530 LGSTKEE-KLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
              T +  + +S R  + +        +     D++E  + +  L+ A+ +A   +  KS
Sbjct: 177 ---TPDGPRWISWREGLIRAGADQAAEWQCVGRDVTERTETERALAEARDLACAANRAKS 233

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
            FLA  SHEIRTPL  IIG S ++ +    P      I Y   +  SG+ +  ++ +LLD
Sbjct: 234 RFLAMASHEIRTPLNGIIGMSGLLLDTELSP----EQITYVKAVKTSGDALASLIEELLD 289

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVK 705
            SKIE+GK++L  +P +L   + +   L+   A  +++ I T     +P  ++ D   ++
Sbjct: 290 YSKIEAGKIDLDAKPFALTALIEDTAELLAPRAQARQLEIATYVDERLPAHVIGDAARLR 349

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSN---EEVILRVRDTGVGMTNYELEKAMKPFGQ 762
           Q+ LN+  NAI FT +GG   +S         +E+   V DTG+G+      +  + F Q
Sbjct: 350 QVLLNLAGNAIKFTETGG---VSLIVEPGLMPDEIRFLVSDTGIGIAPEAQARIFREFEQ 406

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
                     GTGLGL +++ +V    G   + S P  G++ E   
Sbjct: 407 ADEQTARNFGGTGLGLSISERIVKRMGGHIALRSQPGHGSIFEATI 452



 Score = 45.4 bits (106), Expect = 0.040,   Method: Composition-based stats.
 Identities = 25/238 (10%), Positives = 57/238 (23%), Gaps = 20/238 (8%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D HG +   ++      G +   +IG R         +      G+ ++   T      +
Sbjct: 123 DNHGRIAFANDAFCALAGEHRAALIGARFA-------LQVIEQGGETIEADGTKVYDQKI 175

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
              +G       +        +  E        +        +               + 
Sbjct: 176 ATPDGPRWISWREGLIRAGADQAAE-----WQCVGRDVTERTETERALAEARDLACAANR 230

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
            K    ++   +          P   +      L +     + +   +         +SL
Sbjct: 231 AKSRFLAMASHEIR-------TPLNGIIGMSGLLLDTELSPEQITYVKAVKTSGDALASL 283

Query: 270 -PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
             E  D+  I   +         L    +++ E L+ R            +   P  V
Sbjct: 284 IEELLDYSKIEAGKIDLDAKPFALTALIEDTAELLAPRAQARQLEIATYVDERLPAHV 341


>gi|220909068|ref|YP_002484379.1| histidine kinase [Cyanothece sp. PCC 7425]
 gi|219865679|gb|ACL46018.1| histidine kinase [Cyanothece sp. PCC 7425]
          Length = 998

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 116/617 (18%), Positives = 219/617 (35%), Gaps = 51/617 (8%)

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK----DDVLKTEKYPLLTSE 265
                    K     +S Q P   +    +++  T     +     D+L+          
Sbjct: 141 QLPKMFVGSKWLGQNYSFQEPTLIVDETQQLAGGTITIFQRMNPGGDMLRVATNVPTRDG 200

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE------ 319
           + ++         + N           Q  +  +F   +           D G+      
Sbjct: 201 QRAIGTYIPARNPDGNPNPVVSTVLKKQTYTGPAFVVNAWYVTIYEPLLNDRGDVIGMLY 260

Query: 320 -NLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
             +    +            G   Y     +  +  +  + I    G    +   K+ D 
Sbjct: 261 VGVAQSNLPSLTQTIQKTRFGRTGYI--YVVRGSGQQRGEVIIPRPGEQQDVSGWKIKDA 318

Query: 379 NAIKPVMLYRSDR-TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
           +    V        +           +W    +  + +         P +     I  ++
Sbjct: 319 DGQFVVQNIIKTALSVPPGEFSSIRYRWVDSVTKKVEWRVDTLKYYAPWDW-VIAISKDE 377

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG--YPVEDI--L 493
            D +I   ++E     L  ++ +   G  +                + G  Y  E I  L
Sbjct: 378 ADFKIFFNRLENNRT-LNLVV-SVGLGFVV---------------AILGGLYIGEFIRKL 420

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553
            +     ++             I   +  +  E   L     +   +L      L     
Sbjct: 421 GQRLDPLVKAADAMAAGDLGLRIQDHEPDEIGE---LARAFNQMSANLSDSYAHLEQR-- 475

Query: 554 YSLTMHDIS-EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
               + + + E +     L  A+  AE  +  KS FLA +SHE+RTPL A+IG+S+++  
Sbjct: 476 ----VKERTQELEASNQALDLARDAAEAANKAKSTFLANMSHELRTPLNAVIGYSDMLME 531

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
                L    Y+     I+ +G  +L+++N +LD+SKIE+GKM L+ E  +++E V    
Sbjct: 532 D----LEESDYLPDLQKINSAGKHLLELINAVLDLSKIEAGKMELYLEEFNINELVQGVA 587

Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
           +LV+   ++          + + ++ AD   V+Q  LN+LSNA  FT +G  + ++    
Sbjct: 588 ALVKPLMDKNHNRFALQIPDTLGKMTADATKVRQSLLNLLSNASKFTKAG-TVTLNVWID 646

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
             + V  ++ DTG+GM+  +L+K  + F Q  NS      GTGLGL +++       G  
Sbjct: 647 DTQRVFFQISDTGIGMSPEQLDKLFQEFTQADNSTTRNYGGTGLGLAISRRFCRMMGGDI 706

Query: 793 YIFSTPAKGTLIEIIFP 809
            + S P  G++  I  P
Sbjct: 707 TVTSEPGVGSVFTIELP 723


>gi|94313885|ref|YP_587094.1| two-component sensor response receiver component, histidine kinase
           [Cupriavidus metallidurans CH34]
 gi|93357737|gb|ABF11825.1| two-component sensor response receiver component, histidine kinase
           [Cupriavidus metallidurans CH34]
          Length = 1122

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 96/441 (21%), Positives = 168/441 (38%), Gaps = 27/441 (6%)

Query: 392 TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV 451
              A       + W       +                   ++   +     +     E 
Sbjct: 327 GWRAVEVVETGMLWESLRRNTLWLFALTGLTCTLMLAWVRLVDRRIMRPTQTQSLRLQES 386

Query: 452 MQL-CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
             L  +I+E+T  G+ I++      STN AV         D+  +               
Sbjct: 387 EVLGRTIIESTGVGLVILD------STNAAV-----LMENDVSDRITAHAKPGELARFHR 435

Query: 511 HYLTEILSL------DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564
                +                     + +    L++R++             M D++  
Sbjct: 436 AACNALADGERGNTVGRHGKFNFELAHTDETVSYLTVRVVESTYQGKPAKLCAMDDVTAA 495

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           +Q ++ L  A   A+  +  KS FLA +SHEIRTPL  ++G  E+++        +    
Sbjct: 496 RQSESTLLQAIHDADAANRAKSAFLATMSHEIRTPLNGMLGSIELLEVSAL----DAAQR 551

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           +    + +S   ++ I+ND+LD SKIE+G+M L   P  +D  V +        A  + +
Sbjct: 552 DQLEVMQQSAQSLIQIINDVLDFSKIEAGQMALQARPCQIDSLVEDVCRRFAPDAERRSL 611

Query: 685 LIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE--EVILRV 741
            +       +   IL D    +Q+  N++SNAI FT  G  ++ +TT T      + LRV
Sbjct: 612 QLLCVIDPALHAPILLDPLKTEQVLGNLVSNAIKFTEQGKVVVEATTMTEGGRDWLKLRV 671

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            DTG+G+   + ++   PF Q   S   R  GTGLGL +   +V    G   + S P  G
Sbjct: 672 IDTGIGIAIEDQQRLFAPFVQAEQSDSRRFGGTGLGLSICNRLVGLMNGSIRLVSEPGLG 731

Query: 802 TLIEIIFPLYD--TSHPHDCI 820
           +  ++  P+     + P D +
Sbjct: 732 SCFDVRIPMEPVTVTQPADIV 752


>gi|330685290|gb|EGG96951.1| sensor protein kinase WalK [Staphylococcus epidermidis VCU121]
          Length = 608

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 77/387 (19%), Positives = 172/387 (44%), Gaps = 27/387 (6%)

Query: 426 ENMPQNGIEPEDVDTRINKRKM--EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           + + +  +   ++  R+ + +   E E  +L S++   SDGI   +R G +   N    K
Sbjct: 235 DEIGELALAFNNLSKRVQEAQANTESEKRRLDSVITHMSDGILATDRRGRVRIANDMALK 294

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           + G   ED++       L       ++       S  L    E+  +        ++   
Sbjct: 295 MLGMAKEDLIGYYMLSVLNLEEEFSLDEIQENNDSFLLDINEEEGIIAR------VNFST 348

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
           I+++  F + Y   +HD++E +Q + +              + +F+A VSHE+RTPLT++
Sbjct: 349 IVQETGFVTGYIAVLHDVTEQQQVERE--------------RREFVANVSHELRTPLTSM 394

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
             + E ++   +    +    ++ +        ++ +VNDLL +SK+++    +  E V 
Sbjct: 395 NSYIEALEEGAW--KDDNLAPQFLSVTREETERMIRLVNDLLQLSKMDNESDQITKEIVD 452

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
            +  +++ I+  +     K                 D   + Q+  N+++NA+ ++    
Sbjct: 453 FNMFINKIIN--RHEMAAKDTTFVREIPQQTIFAEIDPDKMTQVFDNVITNAMKYSRGDK 510

Query: 724 QIIISTTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
           ++       +    + +R++D G+G+   +++K    F ++  ++  +  GTGLGL ++K
Sbjct: 511 RVEFHVKQNALYNRMTIRIKDNGIGIPINKVDKIFDRFYRVDKARTRKMGGTGLGLAISK 570

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFP 809
            +V+A+ G+ +  S  ++GT I I  P
Sbjct: 571 EIVEAHNGRIWANSVESQGTSIFITLP 597



 Score = 43.1 bits (100), Expect = 0.19,   Method: Composition-based stats.
 Identities = 17/164 (10%), Positives = 42/164 (25%), Gaps = 20/164 (12%)

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365
                 A  +  +      +             G +  AN   L +    + +D+     
Sbjct: 250 RVQEAQANTESEKRRLDSVITHMSDGILATDRRGRVRIANDMALKMLGM-AKEDLIGYYM 308

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
           LS L    + S +   +              +     +  N E  +           +  
Sbjct: 309 LSVLNLEEEFSLDEIQE--------------NNDSFLLDINEEEGIIARVNFSTIVQETG 354

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVM----QLCSILEATSDGI 465
                  +  +  + +  +R+    V     +L + L + +  I
Sbjct: 355 FVTGYIAVLHDVTEQQQVERERREFVANVSHELRTPLTSMNSYI 398


>gi|317131254|ref|YP_004090568.1| multi-sensor signal transduction histidine kinase [Ethanoligenens
           harbinense YUAN-3]
 gi|315469233|gb|ADU25837.1| multi-sensor signal transduction histidine kinase [Ethanoligenens
           harbinense YUAN-3]
          Length = 460

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 85/462 (18%), Positives = 174/462 (37%), Gaps = 31/462 (6%)

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML-YRSDRTCIAASARLHTIQWNRENS 410
             + + D +  A   + LL    L+    +  +       R    A   +  I       
Sbjct: 23  LGWAAADALGQAQ--NRLLPPCILAAGLLVGTLTAWVTCSRVQKRAEKCMDHITQVLGQL 80

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470
                       Q      Q  ++   +       +   E  +   +L   S+G+  ++ 
Sbjct: 81  QQGVLDSAHVTIQDAFLPGQKRVQELLMQISRESERARSERERADDMLNNMSEGLVALDN 140

Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530
              I+  N+   + F     ++L +             +    T+          +    
Sbjct: 141 ALTIVVMNKRAGEFFQSGNANMLGQNLLHL---THMPKLIEAATKTAETGKPDVFDWEDT 197

Query: 531 GSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
                   L + +               L + D++  ++ +                +S+
Sbjct: 198 ER---GLTLQISVSAVNGLDEGNRNGVVLLISDVTAVRRTE--------------QIRSE 240

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           F+A  SHE++TPLTAI GF E++  +        +   Y   I +    +++++ND+L +
Sbjct: 241 FVANASHELKTPLTAIKGFVELM--EADIITEPDQIKSYLGRIRKETERMIELINDILHL 298

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707
           S++ES   +  F  VS+      A   V L A+++ + ++     ++  + A+   + Q+
Sbjct: 299 SELESVNADTGFTAVSMKLTAQRAAESVALSAHKRNVSVQVE--GDVGTVRANPDRMMQL 356

Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
           ALN++ NA+ +    G + ++   + +  V   V DTGVG+     ++  + F ++   +
Sbjct: 357 ALNLIDNAVKYNKPDGNVRVTI-ISKDGNVHFCVNDTGVGIPPEARQRVFERFYRVDKGR 415

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             R  GTGLGL + K +V    G+  I S   +GT I +I P
Sbjct: 416 SRRQGGTGLGLSIVKHIVGLYKGRIEIESIVGEGTSITVILP 457


>gi|332701465|ref|ZP_08421553.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332551614|gb|EGJ48658.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 917

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 114/832 (13%), Positives = 239/832 (28%), Gaps = 110/832 (13%)

Query: 47  DSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTI 106
            + E   +  + Q   S    +D  + FV        RF     A G +  +++   +  
Sbjct: 123 STREAHGYGARPQPERSQLAVVDDLSEFV-------GRFL----ADGTITFVNDAHCRFF 171

Query: 107 GNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAAL 166
           G     ++G  L  +               L  Q        + P+        ++    
Sbjct: 172 GVPREFLLGQNLFALVPAPESTWLQDHLSTLTPQQPASRTRRVIPMPNGGER-WVEWVER 230

Query: 167 PIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEK--EKYDI 224
             +    +   ++  G       +   R      +   + + E       +     +Y I
Sbjct: 231 AFFDSEGKVQEYQSVG--RDVTAEVTSRKELNEANTLLTAIVESVPTPVYIRDTEHRYRI 288

Query: 225 FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK---TEKYPLLTSEESSLPEQEDFHTINLN 281
            +           +     T +     +           +L++      E+  +      
Sbjct: 289 MNPAYARFWGLEPSDCLGKTPHEFLPREAADIIVAGDQAVLSTLRPQEAEEPFYPNGEER 348

Query: 282 QYTKKQYF---------------------GTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
               ++                         +++  +++ + L  R         +    
Sbjct: 349 ILWSREVPLCDKDGKPWGICGVVMDITERQRMESELEDARQGLEVRVAERTRQLREANRR 408

Query: 321 LTPE--------------------TVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDD 359
           L+ E                     +D  P   +V    G     N  +       S   
Sbjct: 409 LSREIAERLAAEREQRLRQEQLRIILDNLPSHVYVRDAQGRYLLMNRQYERFWGLDSGSA 468

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
           +    G +     P       +    L  S+   +                         
Sbjct: 469 L----GRTPYDVLPAKVAEKILADDELILSEGRPLTLDETFQR----AGRLHTFLTCEVP 520

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
             +         G+  +  + +  +  +      L  +++A    + +++  G +L+ N+
Sbjct: 521 LLDSQGRAYAVCGVCTDVSERKRMEAALGESERTLRGLIDAIGQSLVLLDPTGRLLAINK 580

Query: 480 AVSKLFGYPV-EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
                 GY   E++L       +     +     L  +LS             +  +   
Sbjct: 581 TCLGRMGYSEAEEVLGTCHFDHMTSEEAAQRRAMLERVLSSRRPCHERMHFRSALHKTSF 640

Query: 539 LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
                   ++   + YS    DI+     + +L  A+++            + ++HE   
Sbjct: 641 YPFFDEAGQVSSVAIYS---EDITHEVNLERQLRRAQRL-----EAVGTLASGIAHEFNN 692

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
            LT I+GF E+               +    + R+     DIV  +L  S+ +    +  
Sbjct: 693 MLTLIMGFGEMALETSH------EKSDCLLQVLRTAERGRDIVRQMLTFSRGD----DQP 742

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718
             P+ +     E + L++       + + +S       +LA+   + Q+ +N++SNA   
Sbjct: 743 RIPLDIGSTARECLDLLRATLPR-DVRLESSLPERPLCVLANATQIHQLLINLVSNAADA 801

Query: 719 T----PSGGQIIISTTHTSNE-------------EVILRVRDTGVGMTNYELEKAMKPFG 761
                P+GG I +   H   +                L V DTG GM    LE+   PF 
Sbjct: 802 MRGQDPTGGIIRVELAHCPEDKSRTDPSRLLPGEHARLSVSDTGPGMAADVLERIFDPFF 861

Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
                    G+GTGLGL +   +V A  G     S P +G   +I+ PL   
Sbjct: 862 TTKEP----GKGTGLGLAVVHGIVQAMDGVIMAASKPGQGACFDILLPLATV 909



 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 59/537 (10%), Positives = 138/537 (25%), Gaps = 43/537 (8%)

Query: 94  YLKEISEELPKTIGNYAFKMIGMRLC--DVSDILHIDPNNHI--GDLLKRQNTWYGKTTL 149
            +  +S+   +  G  A  ++   L   +            +    L   ++    +  L
Sbjct: 32  RVLFVSDNAGRL-GLDAEALLSGSLSLVERIHPEDAPRVRALTEQALALGRSELRLEYRL 90

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
              +G  + V  +L+     S      G                    +        L E
Sbjct: 91  VTPDGRIVRVE-ELSRFECGSGCARLEGLLLDVSTREAHGYGARPQPERSQLAVVDDLSE 149

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
                 +     +   +        R      +L       +     +    LT ++ + 
Sbjct: 150 FVGRFLADGTITFVNDAHCRFFGVPREFLLGQNLFALVPAPESTWLQDHLSTLTPQQPAS 209

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS----AYFDEGENLTPET 325
             +      N  +   +       ++  +  EY S     +         +E   L    
Sbjct: 210 RTRRVIPMPNGGERWVEWVERAFFDSEGKVQEYQSVGRDVTAEVTSRKELNEANTLLTAI 269

Query: 326 VDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
           V+  P P ++          NP++      +  D +          +A  +        +
Sbjct: 270 VESVPTPVYIRDTEHRYRIMNPAYARFWGLEPSDCLGKTPHEFLPREAADIIVAGDQAVL 329

Query: 385 MLYRSDRTCIAA----SARLHTIQ------WNRENSLAMTFIPFEKANQFPENMPQNGIE 434
              R              R+   +       + +       +      Q  E+  ++  +
Sbjct: 330 STLRPQEAEEPFYPNGEERILWSREVPLCDKDGKPWGICGVVMDITERQRMESELEDARQ 389

Query: 435 ---------------------PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
                                 E  +    +R+  +   QL  IL+     + + + +G 
Sbjct: 390 GLEVRVAERTRQLREANRRLSREIAERLAAEREQRLRQEQLRIILDNLPSHVYVRDAQGR 449

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
            L  NR   + +G      L +     L       +      ILS     TL++    + 
Sbjct: 450 YLLMNRQYERFWGLDSGSALGRTPYDVLPAKVAEKILADDELILSEGRPLTLDETFQRAG 509

Query: 534 KEEKLLSLRIIIKKLPFSS-CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
           +    L+  + +      +        D+SE K+ +  L  +++            L
Sbjct: 510 RLHTFLTCEVPLLDSQGRAYAVCGVCTDVSERKRMEAALGESERTLRGLIDAIGQSL 566



 Score = 81.2 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 46/468 (9%), Positives = 108/468 (23%), Gaps = 64/468 (13%)

Query: 37  EKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLK 96
           E++  ++       QS   D   E  S     ++                +  D     +
Sbjct: 229 ERAFFDSEGKVQEYQSVGRDVTAEVTSRKELNEANTLLTAIVESVPTP-VYIRDTEHRYR 287

Query: 97  EISEELPKTIGNYAFKMIGMRLCDVSDILHID-PNNHIGDLLKRQNTWYGKTTLWPIEGT 155
            ++    +  G      +G    +       D        +L        +   +P    
Sbjct: 288 IMNPAYARFWGLEPSDCLGKTPHEFLPREAADIIVAGDQAVLSTLRPQEAEEPFYPNGEE 347

Query: 156 NLYVPIDLAALPIYSRNREFSGFRGFG--------------------------------- 182
            +    ++   P+  ++ +  G  G                                   
Sbjct: 348 RILWSREV---PLCDKDGKPWGICGVVMDITERQRMESELEDARQGLEVRVAERTRQLRE 404

Query: 183 ----IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ---SPPPHLR 235
               +              +   ++   + +    H  V   +               L 
Sbjct: 405 ANRRLSREIAERLAAEREQRLRQEQLRIILDNLPSHVYVRDAQGRYLLMNRQYERFWGLD 464

Query: 236 MKNKVSSLT-EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294
             + +     +    K          L+ SE   L   E F       +T       L +
Sbjct: 465 SGSALGRTPYDVLPAKVAEKILADDELILSEGRPLTLDETFQRA-GRLHTFLTCEVPLLD 523

Query: 295 NSKESFEY----LSHRNHPSLSAYFDEGENLTPETVDKC-PIPFFVYSHGNLFYANPSFL 349
           +   ++              + A   E E      +D        +   G L   N + L
Sbjct: 524 SQGRAYAVCGVCTDVSERKRMEAALGESERTLRGLIDAIGQSLVLLDPTGRLLAINKTCL 583

Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
               Y   +++        +      S+  A +  ML R   +      R+H      + 
Sbjct: 584 GRMGYSEAEEVLGTCHFDHM-----TSEEAAQRRAMLERVLSSRRPCHERMHFRSALHKT 638

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
           S           ++  +         +       +R++     +L ++
Sbjct: 639 SFY------PFFDEAGQVSSVAIYSEDITHEVNLERQLR-RAQRLEAV 679


>gi|222097101|ref|YP_002531158.1| sporulation kinase a [Bacillus cereus Q1]
 gi|221241159|gb|ACM13869.1| sporulation kinase A [Bacillus cereus Q1]
          Length = 510

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 104/535 (19%), Positives = 202/535 (37%), Gaps = 42/535 (7%)

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTK 353
           +S +   + +                +     +  P     +   G + + NPS   +  
Sbjct: 7   SSTQKKRHPNISRRLRNHIQDRSLTEMYASLFEHNPDGIISLNLEGIIIHTNPSAERILG 66

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
           Y S + +E     S L       + +  + V+    +         + +I       L +
Sbjct: 67  YTSSE-LERKSITSIL-------EAHISEQVLQNIKNTEADNQQEYILSIYHKDGFLLDV 118

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
                    Q         ++P +   RI ++K++    +L +++ +    +   + EG 
Sbjct: 119 VTKLVPIFVQNRLTGVYAIMKPLEKSERI-EKKLKESEKRLRTLVNSMPAFVIFKDHEGR 177

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN----HYLTEILSLDLRQTLEKIT 529
            L  N      F +       K  +  ++ N            + E+     RQ L    
Sbjct: 178 WLEANDYALSCFNFHHVPYHGKKDSELIQYNEAYREAFLHCEEVDELAWQ-QRQILHGEE 236

Query: 530 LGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
               +++  L L I    L           +   DI+E K+ +  L  ++K+A       
Sbjct: 237 FIIHRDDFDLILSISKVPLYHPDGSRKGLIVMGRDITELKETEKLLRKSEKLAVV----- 291

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
               A ++HEIR PLT++ GF  ++      P  N     Y + +    + +  I +  +
Sbjct: 292 GQLTAGIAHEIRNPLTSLKGFLTLLL-----PEINEEQKWYIDVMLSEISQMESITSQFI 346

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
            +SK +     L  +  ++   + E ++ +   A    + I     + +  I  D   +K
Sbjct: 347 AMSKPQ----VLAIQTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYVYDIQCDGNQLK 402

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           Q+ +NIL NAI   P+GG I I T       +++R+ D G G+    + +  +PF     
Sbjct: 403 QVFINILKNAIEAMPNGGNIFIQTKPLEGNFILIRIIDEGCGIPEDRISRLGEPFY---- 458

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820
              ++ +GTGLGL +   +++ + GK +I S   KGT+++I  PL   S PH  I
Sbjct: 459 --SLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTVVDIHLPL---SSPHLAI 508


>gi|269839401|ref|YP_003324093.1| multi-sensor signal transduction histidine kinase [Thermobaculum
           terrenum ATCC BAA-798]
 gi|269791131|gb|ACZ43271.1| multi-sensor signal transduction histidine kinase [Thermobaculum
           terrenum ATCC BAA-798]
          Length = 709

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 103/751 (13%), Positives = 229/751 (30%), Gaps = 91/751 (12%)

Query: 93  GYLKEISEELPKTIGN--------YAFKMIGMRLCDVSDILHIDPNNHI---GDLLKRQN 141
           G +   ++   + +G              I               +  +      L    
Sbjct: 24  GEIVYANDRAAQILGFASPTHLQSTHPDEIDRMFEVFDAETGAAIDPAVSPWRRALTAGE 83

Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
               K   +    T+      L  +P+     +        I      ++      + L 
Sbjct: 84  PCSYK-LRYRSRATHEERWATLRCVPLRGDAGDVEAV--IHIFRDITAEHRREVNSRFLV 140

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
           +    L                                     +       +        
Sbjct: 141 QASLMLGSS------------------------------LDYRDTLRQVAALAVPAVADW 170

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
                           ++     ++     +        E    R      A      + 
Sbjct: 171 CA-----------IDMLDDEGELRRLAIAHMDAERVRMVEGYRERRGQMSDAVRQMLLSG 219

Query: 322 TPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
            P  V +                      L + ++  D+    GL + +  P  +  +  
Sbjct: 220 QPLLVREIDEDVL--------------RQLLEDEAQVDLIRRLGLISCMVLPLRARGSTQ 265

Query: 382 KPVMLYRSD-RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
             + L  S+              Q     ++A+         +                 
Sbjct: 266 GVITLASSESGRRYTEEDLAFAQQLANMAAMALDNAQLYTTARRELEERARAERELARAA 325

Query: 441 RINKRKMEIEVMQ---LCSILEATSDGIAIINRE-GIILSTNRAVSKLFG---YPVEDIL 493
              ++ +E    +   L ++L     G+ II+   G ++  N    ++ G          
Sbjct: 326 ERERQALEESEARRDLLETVLRHLPVGVLIIDARAGQVVVANERAVEILGPQSRSGSIYQ 385

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL-GSTKEEKLLSLRIIIKKLPFSS 552
            +   V   +    +         SL   + ++   L     + +   L++    +    
Sbjct: 386 SELGYVLRSEEGQELSMDQWPVHRSLWAGEAVQGEVLELERPDGERRHLQVSSVPIRDHR 445

Query: 553 CY----SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                    + DI++ +Q + + S   +  E     ++ F+A  SHE++TP+T + G+++
Sbjct: 446 GQIVAAVALVDDITQQRQLEQQRSELLRQIESALELRNQFIATASHELKTPITLLKGYAQ 505

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
           V+ ++    +           I+R  + + +++NDLLD+SKIE+GK+ L    V L +AV
Sbjct: 506 VLMDRSREGV----LRRPLEIINRQVDRMSELINDLLDVSKIEAGKLELVLRKVELTDAV 561

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
            E +   +  A+   I +    A     +L D   ++Q+  N +SNA+ ++ +  ++I+ 
Sbjct: 562 REVVMDQREAASGFEIEL---LAAEPVWVLGDRNRLQQVVANFISNAVKYSGNSRRVIVE 618

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                  EV + V D G+G+   +  +    + +  N       G GLGL + + +V+ +
Sbjct: 619 VR-RDGPEVEVSVTDYGIGIPEDQQPEVFGLYFRGRNVSPRHYSGLGLGLYICRNIVERH 677

Query: 789 MGKFYIFSTPAKGTLIEIIFPLY-DTSHPHD 818
            G+  + S   +G+      P     S P +
Sbjct: 678 GGRIGMSSREGEGSRFWFRLPASGPESLPQE 708



 Score = 46.2 bits (108), Expect = 0.025,   Method: Composition-based stats.
 Identities = 17/127 (13%), Positives = 42/127 (33%), Gaps = 13/127 (10%)

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP-------FTVFLEQNTPS 507
             +L+   DG+ +    G I+  N   +++ G+     L+              +  T +
Sbjct: 7   QEVLDHIQDGVTVQASTGEIVYANDRAAQILGFASPTHLQSTHPDEIDRMFEVFDAETGA 66

Query: 508 VMNHYL---TEILSLDLRQTLEKITLGS-TKEEKLLSLRIIIKK--LPFSSCYSLTMHDI 561
            ++  +      L+     + +       T EE+  +LR +  +              DI
Sbjct: 67  AIDPAVSPWRRALTAGEPCSYKLRYRSRATHEERWATLRCVPLRGDAGDVEAVIHIFRDI 126

Query: 562 SEWKQEK 568
           +   + +
Sbjct: 127 TAEHRRE 133



 Score = 44.6 bits (104), Expect = 0.073,   Method: Composition-based stats.
 Identities = 44/343 (12%), Positives = 92/343 (26%), Gaps = 35/343 (10%)

Query: 323 PETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIE--IAGGLSTLLDAPKLSDNN 379
            E +D       V  S G + YAN     +  + S   ++      +  + +        
Sbjct: 7   QEVLDHIQDGVTVQASTGEIVYANDRAAQILGFASPTHLQSTHPDEIDRMFEVFDAETGA 66

Query: 380 AIKPVM--LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
           AI P +    R+       S +L             T           +      I  + 
Sbjct: 67  AIDPAVSPWRRALTAGEPCSYKLRYRSRATHEERWATLRCVPLRGDAGDVEAVIHIFRDI 126

Query: 438 VDTRINK---RKMEIEVMQLCSIL---EATSD-------------GIAIINREGIILSTN 478
                 +   R +    + L S L   +                  I +++ EG +    
Sbjct: 127 TAEHRREVNSRFLVQASLMLGSSLDYRDTLRQVAALAVPAVADWCAIDMLDDEGELRRLA 186

Query: 479 RA---VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI--TLGST 533
            A     ++         R   +  + Q   S     + EI    LRQ LE         
Sbjct: 187 IAHMDAERVRMVEGYRERRGQMSDAVRQMLLSGQPLLVREIDEDVLRQLLEDEAQVDLIR 246

Query: 534 KEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS--DFLAR 591
           +   +  + + ++    +          S  +  +  L+ A+++A   +           
Sbjct: 247 RLGLISCMVLPLRARGSTQGVITLASSESGRRYTEEDLAFAQQLANMAAMALDNAQLYTT 306

Query: 592 VSHEI--RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
              E+  R    A    +   + +R     +    +    + R
Sbjct: 307 ARRELEERA--RAERELARAAERERQALEESEARRDLLETVLR 347


>gi|268317981|ref|YP_003291700.1| multi-sensor signal transduction histidine kinase [Rhodothermus
           marinus DSM 4252]
 gi|262335515|gb|ACY49312.1| multi-sensor signal transduction histidine kinase [Rhodothermus
           marinus DSM 4252]
          Length = 662

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 111/630 (17%), Positives = 217/630 (34%), Gaps = 28/630 (4%)

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY 246
                  R     L+   +      + ++ V   +  + +     PH     +   L   
Sbjct: 57  LDAQVRARQAPLVLEDTDAAGVSRLRFYAGVPVGEAGVLALADVRPHRFGPEQRLHLE-- 114

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
                ++                 E+       + +   +             +      
Sbjct: 115 --TLAELAAQLWQQEKARRRQLRFERLLRQKAAILERMARGAPLQTVLEEIARWIESESA 172

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
           +   +S     G+ +        P  +     G              Y   + I      
Sbjct: 173 SGALVSILMLRGDRVYHGAAPSLPEAYRRAIDGRQIGPAAGTCGTAAYYRTEVITEDIAT 232

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
                          +   L    R C +              +L         A     
Sbjct: 233 DPRW--------EPYRAFALAHGLRACWSTPVLASDGTVLGTFALYYREPRRPDAQDREL 284

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
                 +    ++    +  ++    QL ++LE   D I +++ E  +   NR   +LF 
Sbjct: 285 VALATHLTAVALERARQQALLQTRERQLTAVLEQAGDAILLLDAEQRVTLFNRMAERLFA 344

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
               DIL +P    L           L E+ +    + ++   +       +  L     
Sbjct: 345 CRAADILGQPVARLLPG---------LREVPAT-TDEPVQLEAVRCDGTHFMAELSRTTL 394

Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
               S+   L + D++E  Q + +L  A++ AE  +  KS  L  +SHE+RTPLT +IGF
Sbjct: 395 TSEASAESLLIVRDLTERLQHEAELIRAREEAEAMNRLKSTLLTNLSHELRTPLTTVIGF 454

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
           ++VI+ +         + E+A  I   G  +L ++ +++D++++E+  +    E + L E
Sbjct: 455 ADVIREEAAPGTL---FHEFAQLIADGGRRLLHLMEEVMDLAQLEAQTLKAGRERLLLPE 511

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726
            +   ++  +  A +K +  R   A  +  + AD   +++   ++L NAI FT  GG + 
Sbjct: 512 RLRPLMATYRARAEQKGLKFRVQQAPGV-AVWADPELLERAVEHLLDNAIKFTERGG-VT 569

Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
           +      + +V + V DTG+G+    L      F Q  +      EG GLGL +A+  V+
Sbjct: 570 VRFRQVED-QVGIVVEDTGIGIPEAALPHVFDEFWQASSGIGRTHEGLGLGLAVARRFVE 628

Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
              G+  + STP +G+   I  P    + P
Sbjct: 629 IMGGRIEVESTPGRGSRFTIWLPAAPVTAP 658



 Score = 38.1 bits (87), Expect = 6.1,   Method: Composition-based stats.
 Identities = 20/249 (8%), Positives = 64/249 (25%), Gaps = 23/249 (9%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +DA   +   +    +     A  ++G  +  +           + ++    +       
Sbjct: 326 LDAEQRVTLFNRMAERLFACRAADILGQPVARLLPG--------LREVPATTDEPVQLEA 377

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           +   +GT+     +L+   + S            IV          A   R  ++   ++
Sbjct: 378 VRC-DGTHFMA--ELSRTTLTSEAS----AESLLIVRDLTERLQHEAELIRAREEAEAMN 430

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS------LTEYYAHKDDVLKTEKYPLL 262
            +K    +    +              ++ + +         +  A     L      ++
Sbjct: 431 RLKSTLLTNLSHELRTPLTTVIGFADVIREEAAPGTLFHEFAQLIADGGRRLLHLMEEVM 490

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE--SFEYLSHRNHPSLSAYFDEGEN 320
              +      +      L     +    T +  +++      +      ++ A  +  E 
Sbjct: 491 DLAQLEAQTLKAGRERLLLPERLRPLMATYRARAEQKGLKFRVQQAPGVAVWADPELLER 550

Query: 321 LTPETVDKC 329
                +D  
Sbjct: 551 AVEHLLDNA 559


>gi|317151756|ref|YP_004119804.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316942007|gb|ADU61058.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 1095

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 121/794 (15%), Positives = 251/794 (31%), Gaps = 83/794 (10%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH-IDPNNHIGDLLKRQNTWY 144
            +  DA G     ++   +  G    +++G R+ + +         +   +L+       
Sbjct: 165 VFYKDAQGRYLGCNKAWEEFAGMTREQVVGRRVEEFAPPAESPVFVSKDRELMATGGHQE 224

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            +          +   I +        +    G    G++       D     +R +++ 
Sbjct: 225 YEQV---TRFGGIERDILIRKAVFNGPDGTPGGI--VGVLTDITRQKDISRRLQRSEERL 279

Query: 205 SHLHEIKK---GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
             + E          +E  +    + +        + +   ++    + D   + + +  
Sbjct: 280 RTILETSPLSIIVVDMESGQTLFCNARGAELFGVDRARAQGMSTRAFYADWQARVDLFER 339

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
           +  E      + +    + +++        +                 +     +E    
Sbjct: 340 IMQEGRLDNVEVEMVRADGSRFW--TQASAVLMVLDGRKAAFIAFWDVTARKDIEESLRK 397

Query: 322 TPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIE----IAGGLSTLLDAPKLS 376
                         +        AN ++L          I        G      A +  
Sbjct: 398 FQFIASASQDMMTLINRDFVFEAANEAYLDHHGRPESGVIGHPVAELWGAGPFEKAIRPR 457

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTI-----QWNRENSLAMTFIPFEKANQFPENMPQN 431
               +    +   +      S R          W   N +               N    
Sbjct: 458 LEKCLTGRSVVYREWFSFPVSGRRFYEVTMYPYWGEGNDVTHVATVTRDITTRQYNETVA 517

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSIL----EATSDGIAIINRE---------------- 471
            +             +E    ++ +IL    EA +  IA+++++                
Sbjct: 518 TMLYRISGAVSTTTDLEDLYQRIHAILNDNIEAANFFIALLDKQRTRLEFPYIEDEKDDF 577

Query: 472 -GIIL------STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
            G I+      + +  V  +       +  K               H +  ++  +  + 
Sbjct: 578 KGKIIPLSEEDTCSLTVEVIRTGRPLLVTSKELAFVDVPGPGDPGLHPVDRMVRSEFLRA 637

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT----------MHDIS------------ 562
                  S      + L + +K                       D++            
Sbjct: 638 KGCEASISVGTPSEVWLGVPLKIRGEVVGVMAVQSYTDPYQYTARDVNLLTSVSEQVALA 697

Query: 563 -EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
            E K  +  L  AK++AE  S  KS+FLA +SHEIRTPL  ++G  ++ +  R     + 
Sbjct: 698 IERKANERDLLKAKELAEAASRSKSEFLANMSHEIRTPLNGVLGMLQLAQTTRL----DA 753

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
              ++ +    SG  +L I+ND+LD SKIE+GK+ +  EP SL   + + ++  +  A +
Sbjct: 754 EQRDFVDTALASGRSLLAIINDILDFSKIEAGKLEVITEPFSLTPFLDDVLTTFRGEARD 813

Query: 682 KRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTT------HTSN 734
           K + +        P  +      V+QI  N++ NAI FT  G  + IS            
Sbjct: 814 KGLTLAVDIWPGTPEHLTGGKSRVRQILFNLVGNAIKFTDQGS-VTISVCPLGPDPRDGR 872

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
             ++  V DTG+G+ +  ++   +PF Q+  S   R +G GLGL + K ++    G   I
Sbjct: 873 TRLLFSVSDTGIGIPDAMVDLIFEPFTQVDGSYMRRHQGAGLGLGIVKRLIGLLGGSMCI 932

Query: 795 FSTPAKGTLIEIIF 808
            S   +GT + ++ 
Sbjct: 933 DSKTGRGTTLHVVL 946



 Score = 77.8 bits (190), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 33/284 (11%), Positives = 88/284 (30%), Gaps = 16/284 (5%)

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIE---I 362
            +H  +     E   L    ++       +  +G       + L     +    +     
Sbjct: 3   PDHILIIEDSPEFARLVAHHLEASGFSVHLAENGR------AGLDAFGGRRFSAVLLDLQ 56

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN----RENSLAMTFIPF 418
              +  L     ++D +   P+++         A   +    W+     E  LA      
Sbjct: 57  LPDMDGLAVLADMADRSDSIPLIVVSGSNGIEDAVQAVRRGAWDFVVKGEAVLAELDHAL 116

Query: 419 EKANQFPENMPQNGIEPE--DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476
            K  +    +       +    + +  ++ +  ++  L ++++A  + +   + +G  L 
Sbjct: 117 FKGLERAAYLAAQRARLDFEIAEHQRTQKALGNQIAFLQTLIDAVPNQVFYKDAQGRYLG 176

Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
            N+A  +  G   E ++ +    F       V      E+++    Q  E++T     E 
Sbjct: 177 CNKAWEEFAGMTREQVVGRRVEEFAPPAESPVFVSKDRELMATGGHQEYEQVTRFGGIER 236

Query: 537 KL-LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579
            + +   +              + DI+  K    +L  +++   
Sbjct: 237 DILIRKAVFNGPDGTPGGIVGVLTDITRQKDISRRLQRSEERLR 280


>gi|194292840|ref|YP_002008747.1| sensor hybrid histidine kinase with pas domain [Cupriavidus
           taiwanensis LMG 19424]
 gi|193226744|emb|CAQ72695.1| Putative sensor hybrid histidine kinase with PAS domain
           [Cupriavidus taiwanensis LMG 19424]
          Length = 662

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 96/539 (17%), Positives = 177/539 (32%), Gaps = 25/539 (4%)

Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI-PFFVYSH-GNLFYANP 346
              LQ  ++     +      +      +        +D       F     G +     
Sbjct: 1   MSGLQAATEVRSTPMEPSAGLAPEGDALQLAQRYRRLLDAVQDCAVFELDAHGAIVAWPE 60

Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
               L  Y + +       +S L     ++       +     +        R+      
Sbjct: 61  PARRLFGYSAAEIAG--SHVSRLHRPEDVAAGVPQHWLETAARNGQARDEGWRVRRDGSL 118

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS-DGI 465
              S  M  I                   +    +       +   +L  + E      +
Sbjct: 119 LRASCEMRRIDAADLPDGAPGAGFIVSCRDTTVQQAAADHARLADDKLRLLAENLPCTAV 178

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
             ++ +G I S N     L G+  ++   +P          +        + +       
Sbjct: 179 CELDLDGTIRSWNAGARVLAGHTAQEAAGQPLAWLYTPQDVAAGRPR-AALEAARACGQW 237

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNKLSHAKKIAEKE 581
                 + K+  ++     +  +  +         T  D+S+  + +          +  
Sbjct: 238 TGEERLARKDGSVVRCATRMVLVRDAAGCPEGLLWTARDLSDALRLET--------LDAG 289

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
           +     FLA ++HE+R PL  +    E I          PR    A  IDR    +  +V
Sbjct: 290 NRRLQSFLAILAHELRNPLAPVRNALEAI---VLAADTGPRVRRCAEIIDRQLRQIERLV 346

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701
           NDLLD+ ++ +GKM +   P S ++ VS  +  ++         +  +     P + AD 
Sbjct: 347 NDLLDVGRVTAGKMKMELTPTSYNDVVSTCLEAIRPTLEAAGQQLVVALPEVTPYVRADA 406

Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761
             + Q+ LN+LSNA  +TP GG + +  +      VI  V DTG G+    L++    F 
Sbjct: 407 ARLGQVLLNLLSNAAKYTPRGGTVSVRVSVEP-ARVITAVSDTGRGLEPSALDRIFNLFA 465

Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFPLYDTSHPHDC 819
           Q  ++      G G+GL LAKA+V+A+ G     S    KG+   +I P      P   
Sbjct: 466 QEGDAGSRS--GLGVGLALAKAIVEAHGGAIQADSAGVGKGSTFTVILPRATARAPEPA 522



 Score = 58.1 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 27/248 (10%), Positives = 61/248 (24%), Gaps = 8/248 (3%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP--NNHIGDLLKRQNTW 143
            + +DAHG +    E   +  G  A ++ G  +  +     +      H  +   R    
Sbjct: 46  VFELDAHGAIVAWPEPARRLFGYSAAEIAGSHVSRLHRPEDVAAGVPQHWLETAARNGQA 105

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +      +G+ L    ++  +          G           V        +  D K
Sbjct: 106 RDEGWRVRRDGSLLRASCEMRRIDAADLPDGAPGAGFIVSCRDTTVQQAAADHARLADDK 165

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSP-----PPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
              L E     +  E +        +        H   +     L   Y  +D      +
Sbjct: 166 LRLLAENLPCTAVCELDLDGTIRSWNAGARVLAGHTAQEAAGQPLAWLYTPQDVAAGRPR 225

Query: 259 YPLLTSEE-SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
             L  +        +E     + +          +++ +      L      S +   + 
Sbjct: 226 AALEAARACGQWTGEERLARKDGSVVRCATRMVLVRDAAGCPEGLLWTARDLSDALRLET 285

Query: 318 GENLTPET 325
            +      
Sbjct: 286 LDAGNRRL 293



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 32/373 (8%), Positives = 75/373 (20%), Gaps = 11/373 (2%)

Query: 75  VFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG 134
                         +D  G ++  +       G+ A +  G  L  +     +       
Sbjct: 167 RLLAENLPCTAVCELDLDGTIRSWNAGARVLAGHTAQEAAGQPLAWLYTPQDVAAGRPRA 226

Query: 135 DLLKRQ--NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192
            L   +    W G+  L   +G+   V      + +        G               
Sbjct: 227 ALEAARACGQWTGEERLARKDGS--VVRCATRMVLVRDAAGCPEGLLW--TARDLSDALR 282

Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD 252
              L     +  S L  +   H           + ++         +V    E    +  
Sbjct: 283 LETLDAGNRRLQSFLAIL--AHELRNPLAPVRNALEAIVLAADTGPRVRRCAEIIDRQLR 340

Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
            ++     LL     +  + +   T              ++   + + + L         
Sbjct: 341 QIERLVNDLLDVGRVTAGKMKMELTPTSYNDVVSTCLEAIRPTLEAAGQQLVVALPEVTP 400

Query: 313 AYFDEGENLTPETVDKCPIPFFVYSHGNLFYA---NPSFLLLTKYKSVDDIEIAGGLSTL 369
               +   L    ++           G             ++T             L  +
Sbjct: 401 YVRADAARLGQVLLNLLSNAAKYTPRGGTVSVRVSVEPARVITAVSDTGRGLEPSALDRI 460

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
            +      +   +  +            A    IQ +       +               
Sbjct: 461 FNLFAQEGDAGSRSGLGVGLALAKAIVEAHGGAIQADSAGVGKGSTFTVILPRATARAPE 520

Query: 430 QNGIEPEDVDTRI 442
                P     R 
Sbjct: 521 PASPPPGKAPRRR 533


>gi|269964754|ref|ZP_06178991.1| putative two-component sensor [Vibrio alginolyticus 40B]
 gi|269830414|gb|EEZ84636.1| putative two-component sensor [Vibrio alginolyticus 40B]
          Length = 632

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 77/257 (29%), Positives = 136/257 (52%), Gaps = 8/257 (3%)

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
             + + K+ + +L   +  AE  +  KS+FLA +SHEIRTP+  IIG S ++ +      
Sbjct: 218 RSVEKVKEHQTELEAERDRAEVANRKKSEFLATMSHEIRTPMNGIIGVSSLLNDTDL--- 274

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
            +P+  E+   ID S + ++ I++D+LD SK+E+GK+ L +    L E + + ISL  + 
Sbjct: 275 -DPQQKEFVEIIDSSSHSLMTIIDDILDFSKVEAGKVELEYTSYDLRELLDDVISLHSVK 333

Query: 679 ANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNE- 735
           A +K + + +    ++P  +  D   +KQ+  N+LSNAI FT  G  +++++ +    E 
Sbjct: 334 AKQKNLQLLSDIDPHLPMEVQGDATRLKQVLNNLLSNAIKFTERGHVKLLVALSRLDGET 393

Query: 736 -EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
             +  RV D+G+G+     +   + F Q   S   +  GTGLGL +A  +V+   G+  +
Sbjct: 394 AHIRFRVVDSGIGIAKEHQQAIFERFQQADGSTTRKYGGTGLGLAIAAQLVNLMGGEIQL 453

Query: 795 FSTPAKGTLIEIIFPLY 811
            S    G+  E   P+ 
Sbjct: 454 TSELGLGSCFEFSIPVA 470


>gi|295691206|ref|YP_003594899.1| PAS/PAC sensor hybrid histidine kinase [Caulobacter segnis ATCC
           21756]
 gi|295433109|gb|ADG12281.1| PAS/PAC sensor hybrid histidine kinase [Caulobacter segnis ATCC
           21756]
          Length = 554

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 90/369 (24%), Positives = 162/369 (43%), Gaps = 11/369 (2%)

Query: 446 KMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           K       L +++E+    + + + ++G  +  NR   +L G P E ++ +    F   +
Sbjct: 24  KALHSRAFLDAVVESVPAMLVVKDGKDGRFVLINRTGEELLGVPREMLIGRSDADFFPAD 83

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEE-KLLSLRIIIKKLPFSSCYSLTM-HDIS 562
             +        +L  D    +++  L +     + L  + I           L +  DI+
Sbjct: 84  QAAAFAEMDRRVLDSDRVWVIDEEPLSTPHNGDRWLQTKKIAIPGEGDEKLLLIVSEDIT 143

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E K+    L  A + A+  S  K++FLA +SHEIRTPL  ++G ++V+           R
Sbjct: 144 ERKKSAAALEAALQSAQAASIAKTEFLANMSHEIRTPLNGVLGMAQVLAQTELTA----R 199

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             E  + I  SG ++  +++D+LD++K+E+G++ +   P SL  ++  + +  +  A++K
Sbjct: 200 QREMMDVILNSGRVLNALLSDILDLAKVEAGEVEVETAPFSLRTSIGASAATFEGLAHQK 259

Query: 683 RILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVIL- 739
            +     F      R++ D   + QI  N++SNA+ FT  GG  +   T    +  V L 
Sbjct: 260 GLTFSLDFGPGFQDRVVGDALKLSQIVNNLISNAVKFTNEGGVAVRAETRRAQDGAVELT 319

Query: 740 -RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
             V D+G G +        + F Q   S   R  G+GLGL +A        G     STP
Sbjct: 320 VEVEDSGEGFSPEVQASLFERFVQGDGSITRRFGGSGLGLSIALRFAKLMDGDITCQSTP 379

Query: 799 AKGTLIEII 807
            +G      
Sbjct: 380 GEGATFRFT 388



 Score = 41.2 bits (95), Expect = 0.70,   Method: Composition-based stats.
 Identities = 26/291 (8%), Positives = 66/291 (22%), Gaps = 14/291 (4%)

Query: 46  HDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKT 105
           H + +Q++    +    +   +  +    V +               G    I+    + 
Sbjct: 6   HTAQDQASVIAADTSHPTKALHSRAFLDAVVE--SVPAMLVVKDGKDGRFVLINRTGEEL 63

Query: 106 IGNYAFKMIGMRLCDVSDILHIDPNNHI-GDLLKRQNTW-YGKTTLWPIEGTNLYVPIDL 163
           +G     +IG    D            +   +L     W   +  L      + ++    
Sbjct: 64  LGVPREMLIGRSDADFFPADQAAAFAEMDRRVLDSDRVWVIDEEPLSTPHNGDRWLQTKK 123

Query: 164 AALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYD 223
            A+P      E        +           A  +   +        K    +    +  
Sbjct: 124 IAIP-----GEGDEKLLLIVSEDITERKKSAAALEAALQSAQAASIAKTEFLANMSHEIR 178

Query: 224 -----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTI 278
                +           +  +   + +   +   VL      +L   +    E E     
Sbjct: 179 TPLNGVLGMAQVLAQTELTARQREMMDVILNSGRVLNALLSDILDLAKVEAGEVEVETAP 238

Query: 279 NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
              + +      T +  + +     S    P              + V+  
Sbjct: 239 FSLRTSIGASAATFEGLAHQKGLTFSLDFGPGFQDRVVGDALKLSQIVNNL 289



 Score = 38.1 bits (87), Expect = 5.6,   Method: Composition-based stats.
 Identities = 12/157 (7%), Positives = 29/157 (18%), Gaps = 9/157 (5%)

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLL 351
           +      +        S               V+  P    V     G     N +   L
Sbjct: 4   DEHTAQDQASVIAADTSHPTKALHSRAFLDAVVESVPAMLVVKDGKDGRFVLINRTGEEL 63

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411
                 + +               +D  A    M  R   +          +        
Sbjct: 64  LGVPR-EMLIGRSDADFF-----PADQAAAFAEMDRRVLDSDRVWVIDEEPLSTPHNGDR 117

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
            +            +      +  +  + + +   +E
Sbjct: 118 WLQTKKIAIP-GEGDEKLLLIVSEDITERKKSAAALE 153


>gi|218781499|ref|YP_002432817.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
            alkenivorans AK-01]
 gi|218762883|gb|ACL05349.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
            alkenivorans AK-01]
          Length = 1372

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 114/717 (15%), Positives = 224/717 (31%), Gaps = 80/717 (11%)

Query: 133  IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192
            +   +++   +  +      +G   +        P      +    R FG +      N+
Sbjct: 553  VKRAIEKAEPYEIELQAIRSDGVIRH--CLAKGFPEKDTTGKVV--RLFGFLQDITEKNE 608

Query: 193  PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSS--LTEYYA 248
              +  K+L +  + + +    +   + +K  I         +    K+++     +E Y 
Sbjct: 609  ALSEIKQLVRDQTIILDNVPAYIYFKDDKNHILRISKRVARITGLPKHEIEGRHSSEIYP 668

Query: 249  HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
               D    +   ++ S E+ L   E     +             + ++ +    +     
Sbjct: 669  EMADKYYKDDLEVIRSGEAKLGIVEPLPLADGETRWLLTDKIPYRGDTGKVEGVIVMATD 728

Query: 309  PSLSAYFD----EGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDI-EI 362
             +     +      E       +        V   G     N S  + T Y   + +   
Sbjct: 729  ITGRVETENKLKTSETKFKSLFEYAADAIYLVSEQGKFLEVNRSAEVQTGYSRKELLNMH 788

Query: 363  AGGLSTLLDAPKLSDNNAIKP---------VMLYRSDRTCIAASARLHTIQWNRENSLAM 413
             G L                                D         +  I  N E  L  
Sbjct: 789  VGDLDARAVEENDETKIWKNLKPGQTYILKTYHKHKDGHTFPVEINISLIFLNEERVL-- 846

Query: 414  TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
                              G   +  +     +K++    +L    +  +DG+   N E  
Sbjct: 847  -----------------LGFVRDVTEKEETLQKLKKSEERLSLAFQGANDGLWDWNLETD 889

Query: 474  ILSTNRAVSKLFGYPVEDILRK--PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
             +  +     + GY   +I  +   +   ++          L + L    R         
Sbjct: 890  EVFYSPRWKDMLGYEDHEIKNQLSEWERLIKPENRIKAWSTLNDYL-TGKRDNFTCEFQM 948

Query: 532  STKEEKLLSLRIIIKKLPFSS-----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
              K+   + +      +   S         T  DISE K+ + +L   +K+    +    
Sbjct: 949  RHKKGHYVDILSRAFAIREKSDQKPTRVVGTHVDISERKEMERRLQQIQKMESIGN---- 1004

Query: 587  DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
                 ++H+    L+ IIG SE++      P     Y E A  I ++G    ++V  +L 
Sbjct: 1005 -LAGGIAHDFNNILSPIIGMSELLLEDL--PANGLEY-ENAEEIFKAGKRGSELVKQILA 1060

Query: 647  ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706
             S+    +      P  +   + E + L +       I I      +   ILAD   + Q
Sbjct: 1061 FSR----QSEKTMIPTRIQSVLKEVLKLCRSTIPI-NIEIYQDIQADCGLILADSTQIHQ 1115

Query: 707  IALNILSNAIHFTPS-GGQIIIS------------TTHTSNEEVILRVRDTGVGMTNYEL 753
            +A+N+++NA H      G+I IS            T     +  +L V D G G++   +
Sbjct: 1116 VAMNLITNAYHAIEKTKGKISISLTESSFDSLSMKTDLEPGKYAVLSVSDNGHGISPDMI 1175

Query: 754  EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             K   P+         +G+GTGLGL +   ++  + G  ++ S   KGT  E+ FPL
Sbjct: 1176 NKIFDPYFTTK----EKGKGTGLGLSVVYGIMKEHKGDIFVNSEVGKGTTFELYFPL 1228



 Score =  120 bits (301), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 51/503 (10%), Positives = 130/503 (25%), Gaps = 27/503 (5%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQNTWYGKTTLWPIE 153
              +++            +IG ++ DV  +   +    +  D      T       W   
Sbjct: 386 FILVNKAYEDFWCIEKNDIIGKQVSDVMGMAKFESGVKLNVDKCLAGETVSYGC--WFDS 443

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
                  + L   P  +   E  G     I +      + + L K+ ++  S    +   
Sbjct: 444 PQKGRRYMQLNYYPYKNNKSEVIGL--INISYDFTEYFESQELLKQQERMLSRTESMAHI 501

Query: 214 HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE 273
            S   +   D  +       +  ++       +  H    L  +   L    + ++ + E
Sbjct: 502 GSWQWEIATDTVTWSDELFKIFRRDPNLGTPSFAEHPQLYLPEDMARLEQLVKRAIEKAE 561

Query: 274 DFHTINLNQYTKKQYFGTLQ------NNSKESFEYLSHRNHPSLSAYFDEGENLTPE--- 324
            +        +       L       + + +           +                 
Sbjct: 562 PYEIELQAIRSDGVIRHCLAKGFPEKDTTGKVVRLFGFLQDITEKNEALSEIKQLVRDQT 621

Query: 325 -TVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
             +D  P    F     ++   +     +T     +       +     +    +     
Sbjct: 622 IILDNVPAYIYFKDDKNHILRISKRVARITGLPKHE-------IEGRHSSEIYPEMADKY 674

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
                   R+  A    +  +      +  +            +      +  +      
Sbjct: 675 YKDDLEVIRSGEAKLGIVEPLPLADGETRWLLTDKIPYRGDTGKVEGVIVMATDITGRVE 734

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            + K++    +  S+ E  +D I +++ +G  L  NR+     GY  +++L         
Sbjct: 735 TENKLKTSETKFKSLFEYAADAIYLVSEQGKFLEVNRSAEVQTGYSRKELLNMHVGDLDA 794

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK--LPFSSCYSLTMHD 560
           +         + + L       L   T    K+     + I I    L         + D
Sbjct: 795 RAVEENDETKIWKNLKPGQTYIL--KTYHKHKDGHTFPVEINISLIFLNEERVLLGFVRD 852

Query: 561 ISEWKQEKNKLSHAKKIAEKESS 583
           ++E ++   KL  +++       
Sbjct: 853 VTEKEETLQKLKKSEERLSLAFQ 875



 Score = 65.8 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 53/146 (36%), Gaps = 6/146 (4%)

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
           E  + +I + K+   + +  ++  +   GI + +R G I+ TN     L     E+  ++
Sbjct: 222 EIDNHQITQNKLRFALDKYRTLFTSFPHGITVSDRVGNIIETNPVAENLLALSKEEHEQR 281

Query: 496 PF----TVFLEQNTPSVMNHYLTEILSLDLRQTL-EKITLGSTKEEKLLSLRIIIKKLP- 549
                    +  +   +       + +L   + + +          ++  L +    LP 
Sbjct: 282 TIDGEGWRIIRTDGTDMPPDEWASVKALKENRLVSDCEMGIYRPNNEVTWLNVTAAPLPI 341

Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAK 575
            +    +T  DI+  K  ++ L   K
Sbjct: 342 ENHGVVVTYSDITAKKLTQDDLYLHK 367



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/251 (11%), Positives = 74/251 (29%), Gaps = 19/251 (7%)

Query: 86   TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN-HIGDLLKRQNTWY 144
             + +   G   E++       G    +++ M + D+      + +   I   LK   T+ 
Sbjct: 757  IYLVSEQGKFLEVNRSAEVQTGYSRKELLNMHVGDLDARAVEENDETKIWKNLKPGQTYI 816

Query: 145  GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
             KT     +G    V I+++ +   +  R   GF     V       +     K+ +++ 
Sbjct: 817  LKTYHKHKDGHTFPVEINISLI-FLNEERVLLGF-----VRDVTEKEETLQKLKKSEERL 870

Query: 205  S-HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
            S        G      E  ++F        L  ++           +    +       T
Sbjct: 871  SLAFQGANDGLWDWNLETDEVFYSPRWKDMLGYEDHEIKNQLSEWERLIKPENRIKAWST 930

Query: 264  SEESSLPEQEDF-----------HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
              +    ++++F           H +++          + Q  ++    ++       + 
Sbjct: 931  LNDYLTGKRDNFTCEFQMRHKKGHYVDILSRAFAIREKSDQKPTRVVGTHVDISERKEME 990

Query: 313  AYFDEGENLTP 323
                + + +  
Sbjct: 991  RRLQQIQKMES 1001


>gi|182420546|ref|ZP_02643812.2| sensory box histidine kinase [Clostridium perfringens NCTC 8239]
 gi|182379796|gb|EDT77275.1| sensory box histidine kinase [Clostridium perfringens NCTC 8239]
          Length = 821

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 94/388 (24%), Positives = 182/388 (46%), Gaps = 15/388 (3%)

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
           +       +  +    ++ +++E  +L  + E   D I  I+ EG I   N+AV  + GY
Sbjct: 409 LYYVLRINDITEEYTMEKNLKLEEQRLRGVTENIKDLIFTIDVEGKISYVNKAVIDVLGY 468

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
             E+++ K +   L   +   +    ++  + D   T++K+      ++ L+ L  I  +
Sbjct: 469 SEEELIGKNYYDLLLVESNLNIID--SKYFNEDKILTIDKV----RSKKGLVQLESISSR 522

Query: 548 LPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
           +  +      +     +I + ++ +  L +  +  ++    +S+F A +SHE+RTP+  I
Sbjct: 523 IKDNKNNTLGWVRVARNIEDVREIEI-LKNKFEEIKQYDKVRSEFFANLSHELRTPINII 581

Query: 604 IGFSEVIKNQRFGPLGNPR-YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
               +++   +         Y +Y   + ++   +L +VN+L+DI+KI+SG + + F   
Sbjct: 582 YSCIQLLNTSKKNKANFANLYDKYEKTLKQNCFRMLRLVNNLIDITKIDSGFIKMDFINY 641

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
            + +   +    V  Y   K I I          I  D   +++I LN+LSNAI FT  G
Sbjct: 642 DIIKLTEDITMSVIPYVESKNIDIIFDTDCEELEIRCDPDKIERIILNLLSNAIKFTEPG 701

Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
           G+I +S        V +RV+DTG+G+ ++  E   + F Q   S     EG+G+GL L K
Sbjct: 702 GKIEVSI-FADEAWVDIRVKDTGIGIPSHMKEFIFERFIQNDKSLNRNKEGSGIGLSLVK 760

Query: 783 AMVDANMGKFYI-FSTPAKGTLIEIIFP 809
           ++V+ + GK ++  S    G+   I+ P
Sbjct: 761 SLVELHEGKVFLRESNE-SGSEFSILLP 787



 Score = 45.0 bits (105), Expect = 0.052,   Method: Composition-based stats.
 Identities = 7/38 (18%), Positives = 17/38 (44%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS 122
             + ID  G +  +++ +   +G    ++IG    D+ 
Sbjct: 445 LIFTIDVEGKISYVNKAVIDVLGYSEEELIGKNYYDLL 482


>gi|91222987|ref|ZP_01258253.1| putative two-component sensor [Vibrio alginolyticus 12G01]
 gi|91191800|gb|EAS78063.1| putative two-component sensor [Vibrio alginolyticus 12G01]
          Length = 632

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 77/257 (29%), Positives = 137/257 (53%), Gaps = 8/257 (3%)

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
             + + K+ + +L   +  AE  +  KS+FLA +SHEIRTP+  IIG S ++ +      
Sbjct: 218 RSVEKVKEHQTELEAERDRAEVANRKKSEFLATMSHEIRTPMNGIIGVSSLLNDTDL--- 274

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
            +P+  E+   ID S + ++ I++D+LD SK+E+GK+ L +    L E + + ISL  + 
Sbjct: 275 -DPQQKEFVEIIDSSSHSLMTIIDDILDFSKVEAGKVELEYTSYDLRELLDDVISLHSVK 333

Query: 679 ANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNE- 735
           A +K + + ++   ++P  +  D   +KQ+  N+LSNAI FT  G  +++++ +    E 
Sbjct: 334 AKQKNLQLLSNIDPHLPIEVQGDATRLKQVLNNLLSNAIKFTERGHVKLLVALSRLDGET 393

Query: 736 -EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
             +  RV D+G+G+     +   + F Q   S   +  GTGLGL +A  +V+   G+  +
Sbjct: 394 AHIRFRVVDSGIGIAKEHQQAIFERFQQADGSTTRKYGGTGLGLAIAAQLVNLMGGEIQL 453

Query: 795 FSTPAKGTLIEIIFPLY 811
            S    G+  E   P+ 
Sbjct: 454 TSELGLGSCFEFSIPVA 470


>gi|227514134|ref|ZP_03944183.1| histidine kinase [Lactobacillus fermentum ATCC 14931]
 gi|227087505|gb|EEI22817.1| histidine kinase [Lactobacillus fermentum ATCC 14931]
          Length = 619

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 87/427 (20%), Positives = 170/427 (39%), Gaps = 47/427 (11%)

Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM-EIEVMQLC 455
             R  T++  R       F    K     E     G            ++  + E  +L 
Sbjct: 212 EMRKQTLRIARG-----DFSGQVKVMGNDELGQLAGAVNNLSVRVEESQESSDAERRRLD 266

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRKPFTVFLEQNTPSVMNHYLT 514
           S+L   SDG+   +R G +   N    +       E +L K     L+      + H + 
Sbjct: 267 SVLSHMSDGVLATDRRGNLTIVNNTALQFLNIADEEQVLGKSILDVLKIRRQFSIRHLVD 326

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS----LTMHDISEWKQEKNK 570
           E     +   L +  +          L      +   S +       +HD++  ++E+ +
Sbjct: 327 EDQDQVILDDLNEDLI----------LSAYFSPIKRESGFVSGLVCVLHDVTSQQEEERE 376

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI-EYANY 629
                            F++ VSHE+RTPLT++  + E + +   G + +P     +   
Sbjct: 377 RKE--------------FVSNVSHELRTPLTSVKSYVEALSD---GAINDPELAPRFLGV 419

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN-------EK 682
           +      ++ ++NDLL +S++++G   L+ E V+++E  +  ++   +          +K
Sbjct: 420 VSDETERMIRMINDLLSLSRMDAGTAKLNLEYVNINELFNHILNRFDMIIKNEAADPSQK 479

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           +  I   F      +  D     Q+  NI++NA+ ++P GG I       ++  VIL + 
Sbjct: 480 KYTIVRYFTKKDLWVEIDTDKFTQVVDNIMNNAVKYSPDGGVITARL-LETHNHVILSIS 538

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G+G+   +L      F ++   +  +  GTGLGL ++K +V+   G+ ++ S   KG+
Sbjct: 539 DQGLGIPRKDLGHIFDRFFRVDKDRSRKQGGTGLGLAISKEVVNLLGGQIWVDSVEGKGS 598

Query: 803 LIEIIFP 809
              I  P
Sbjct: 599 TFYISLP 605


>gi|171060877|ref|YP_001793226.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
 gi|170778322|gb|ACB36461.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
          Length = 1110

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 115/683 (16%), Positives = 225/683 (32%), Gaps = 56/683 (8%)

Query: 175 FSGFRGFGIVHVNRVDNDPRALGKR----LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP 230
               RG         +N  + L       L  +   L  + +   + +  ++    Q++ 
Sbjct: 27  IDRVRGVQAERDLVAENLSQELAASIDQGLQARIGALQMLAQSPLADDPSRWRELYQEAQ 86

Query: 231 PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG 290
                  + V         +          L                          + G
Sbjct: 87  GFRQSFGSHVVLADRSLRMRFTTRSPFGAELPMLPRPKGQAAAPKALETGLPAVGDTFIG 146

Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGEN-LTPETVDKCPIPF---FVYSHGNLFYANP 346
            +      +    + R     +      E       +D+  +P         G       
Sbjct: 147 PIAKAPLVAIAVPALRGGQVTALLLTTFEASQYQAQLDQVRLPAHWSLSLLDGKGDVIAR 206

Query: 347 SFLLLTKYKSVDDIEI--------AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398
                   + V D E         A     L     +         +         + + 
Sbjct: 207 RAPAEPPAQRVVDAEGRFAVRSAVAPWSVVLEIPRDVYRAPLQAAALTLAIAILGASLAG 266

Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFP----ENMPQNGIEPEDVDTRINKRK--MEIEVM 452
            L  +  +R    A+  +        P      +       ++   R    +  +     
Sbjct: 267 VLGGMLASRRLGRAVDSLAQPPQPGTPPSSIREIAAARQLIDETARRSQAAQDSLRDSER 326

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
           +   + +     +A+++R+  +   NR   +LFGY + +I        L     +     
Sbjct: 327 RFRRLFQEAPLPLALVSRDARVTDINRRFVQLFGYTLAEIPTLAHWWQLAYPDATYRAAV 386

Query: 513 LTEILSLDLRQTLEK------ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQ 566
           +    +  +     +          + ++  + +L I    +     +  T  DI+E ++
Sbjct: 387 IARWNAARVAVAQTRGDIAPQEYHVTCRDGSVRTLLIAG--IDQDDGFMATFFDITEIRR 444

Query: 567 EKN------------------KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
            +                   +L  A++ AE  +  KS FLA +SHEIRTP+ AI+G + 
Sbjct: 445 AEQHVRALNADLERRVADRTGELLQAREAAEAANRAKSAFLANMSHEIRTPMNAIVGLAH 504

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
           +++     P+   R       +  +   +L ++ND+LD+SKIE+GK+ L   P SL   +
Sbjct: 505 LLRRDAHEPVAAQR----LGQMIDAAGHLLQVINDILDLSKIEAGKLQLEQLPFSLQALL 560

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII-- 726
           +   +LV   A  K + +          +  D   + Q  LN+L NA+ FT  G  ++  
Sbjct: 561 ARNCALVADRARAKGLAVAIEVDGVPDALSGDPTRLSQALLNLLGNAVKFTEQGSIVLRA 620

Query: 727 --ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
             ++     +  V  RVRDTG+G+   +L++   PF Q   S   R  GTGLGL + + +
Sbjct: 621 ECVARGTDDHLTVRFRVRDTGIGIAPDKLDQLFAPFMQADASTTRRFGGTGLGLAITQRL 680

Query: 785 VDANMGKFYIFSTPAKGTLIEII 807
                G+  + S P +G+     
Sbjct: 681 AATMGGEVGVRSEPGRGSEFWFT 703


>gi|146309326|ref|YP_001189791.1| multi-sensor signal transduction histidine kinase [Pseudomonas
           mendocina ymp]
 gi|145577527|gb|ABP87059.1| multi-sensor signal transduction histidine kinase [Pseudomonas
           mendocina ymp]
          Length = 640

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 99/612 (16%), Positives = 211/612 (34%), Gaps = 50/612 (8%)

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           + ++    +    + + +         + +              +      PL   +  +
Sbjct: 66  DAEQTARELAFCAHAVHADALLEVGNALDDARFRDNPLVTSDPSIRFYAGMPLHDGQGLA 125

Query: 269 LPEQEDF-HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
           L                ++Q    L   + E FE        +      E   +    +D
Sbjct: 126 LGTLCVIDRRPRQLDEHQRQQLRHLAQLTGELFELRLQARRQA------EQSAMHQAMLD 179

Query: 328 KCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
                  V    G +  +NP    L  Y +    E             L +    + + L
Sbjct: 180 NAGSAVLVLDPQGRVQRSNPEARQLLGYSAEALNEQ-------HLPQLLEEPGQFERLCL 232

Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
             +     A       ++     SL +         +         +  +       +++
Sbjct: 233 ACARGPQSA----EGRLRPRHGQSLPVRLNLSPIRAEGQALQGYLLVANDLSQRDEARQR 288

Query: 447 MEIEVMQLCSILEATSDGIAIINREG--IILSTNRAVSKLFGYPVEDILR--KPFTVFLE 502
           ++    QL  ++        ++  +G      ++  +  ++G   E++ +        L 
Sbjct: 289 LQRIAAQLPGMVYQ-----YLLRADGSSCFPYSSAGIRDIYGCTPEEVCQDAASAFARLH 343

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---YSLTMH 559
               + +   + +  S     T  +       E  L+ +               +   + 
Sbjct: 344 PEDTAPVREAIAD--SAQRLATWHQEYRVLHPERGLIWVEGRAAPQRLPGGEVLWHGFIS 401

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           DISE K+ +                +++F++ VSHE+RTPLTAI G   +I     G + 
Sbjct: 402 DISERKRGE--------------QLQNEFVSTVSHELRTPLTAIAGSLGLINGGALGAVP 447

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
                +       +   +  +++DLLD+ K+ +GKM    +P++L   + +A+   Q YA
Sbjct: 448 -ENMQQMLEIAQSNSQRLRHLIDDLLDMDKLVAGKMRFDLQPLALRPLLQQALHDNQPYA 506

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
             +++ ++   A +  ++LAD + V+Q+  N+L+NA  F+  G  + +S        V +
Sbjct: 507 ERQQVRLQL-LAGSDCQVLADAKRVEQVLANLLANAAKFSSPGQPVELSAAPRD-GWVRI 564

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            VRD G+G+      +    F Q       +  GTGLGL ++K +++   G+    S   
Sbjct: 565 SVRDQGLGIPTSFKPRIFSKFAQADAGDTRQQGGTGLGLAISKELIERMGGRIGFDSQEG 624

Query: 800 KGTLIEIIFPLY 811
           +G+      PL 
Sbjct: 625 QGSTFWFELPLA 636



 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/249 (10%), Positives = 68/249 (27%), Gaps = 23/249 (9%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK--RQNTWYGK 146
           +D  G ++  + E  + +G  A  +    L  +     ++       L     +     +
Sbjct: 188 LDPQGRVQRSNPEARQLLGYSAEALNEQHLPQL-----LEEPGQFERLCLACARGPQSAE 242

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
             L P  G    +P+ L   PI +  +   G+     + V    +      +RL +  + 
Sbjct: 243 GRLRPRHG--QSLPVRLNLSPIRAEGQALQGY-----LLVANDLSQRDEARQRLQRIAAQ 295

Query: 207 LHEIKKGHSSVEKEKYDIFSQQS-------PPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
           L  +   +              +         P    ++  S+    +      +  E  
Sbjct: 296 LPGMVYQYLLRADGSSCFPYSSAGIRDIYGCTPEEVCQDAASAFARLHPEDTAPV-REAI 354

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
                  ++  ++             +      +    E   +    +  S     ++ +
Sbjct: 355 ADSAQRLATWHQEYRVLHPERGLIWVEGRAAPQRLPGGEVL-WHGFISDISERKRGEQLQ 413

Query: 320 NLTPETVDK 328
           N    TV  
Sbjct: 414 NEFVSTVSH 422


>gi|115377551|ref|ZP_01464750.1| sensory box histidine kinase [Stigmatella aurantiaca DW4/3-1]
 gi|310821655|ref|YP_003954013.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|115365438|gb|EAU64474.1| sensory box histidine kinase [Stigmatella aurantiaca DW4/3-1]
 gi|309394727|gb|ADO72186.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 724

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 96/650 (14%), Positives = 207/650 (31%), Gaps = 61/650 (9%)

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
           L +        +     + +     +      P    +           H    L   + 
Sbjct: 94  LVEDAREDARTQNHPLVLGEPSLRFY---LALPLHNEEGGQVGALCLIDHVPRRLNALQS 150

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD--E 317
            +L      +  Q   H   L    +       Q       E L            +   
Sbjct: 151 KILEHLRRQVETQLRLHEQLLEAQERASQMEEAQARLYALNENLLIEVRQRQHIQRELLS 210

Query: 318 GENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
              L  + +   P    +    G     N +F       S  D+     L   L     +
Sbjct: 211 QRELLTQALAHIPFAVFWKDRDGRFLGCNDAFAQHLGVSSPQDVIGRTDLELGLLPHVAA 270

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
                  +++     +           Q +    L +        +   +     GI  +
Sbjct: 271 AYRRDDVLVM----DSGQTRLGIEEPFQRSNGEELWLLTSKVPLRDPDGKVRSVLGIFAD 326

Query: 437 DVDTRINKRKME------------------IEVMQLCSILEATSDGIAIINREGIILSTN 478
             D R  +  ++                      ++  ++EA+ D + +++ +G +L  N
Sbjct: 327 LTDRRRQEATLQKALWQVKQYAALLETQVVAASERVRRLMEASRDAVFVLDEKGRVLELN 386

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
               +L G    ++L  PF +   +    V++H L E+L+    +  E+    +  E   
Sbjct: 387 PVAERLLGRTAAELLGMPFDLLAPEPERLVLHHALEELLARGTMRLEEQGLRSAQGERIS 446

Query: 539 LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
           + L   +++   +    +   D++E ++ + +     ++A           A ++HEI  
Sbjct: 447 VQLIGSLQEAGEARRQLVVAQDLTEKRRMEQQNIQNDRLA-----AMGVLTAGIAHEINN 501

Query: 599 PLTAIIGFSEVI------KNQRFGPLGN---------PRYIEYANYIDRSGNLVLDIVND 643
           P++ ++   +++        Q+   L           P               + DIV  
Sbjct: 502 PISYMLANLDLLRQWEDDLEQQLPALPGLPPELLERLPEARSVIADCIEGSLRIGDIVRG 561

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703
           +  +S    G +     PV +  ++   + + Q    +    ++  +A N+P +L     
Sbjct: 562 MRLLSHTGQGDV---LSPVDIHRSLDAVLHIAQGEL-KHTARLKQDYARNLPMVLGSEGR 617

Query: 704 VKQIALNILSNAIHFTPSGG----QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKP 759
           + Q+ LN++ NA+H    G      + I +      +V + + DTG G+    L +   P
Sbjct: 618 LGQVFLNLIINAVHAMRPGSPADHVLHIRSRL-DEGQVRIDISDTGHGIPPEVLPRIFDP 676

Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           F     +      GTGLGL ++ A++    G   + S    GT   ++ P
Sbjct: 677 FFTTKPAGI----GTGLGLSISYAIIQKMGGSMRVESRVGHGTTFSLLLP 722



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/247 (13%), Positives = 72/247 (29%), Gaps = 7/247 (2%)

Query: 82  TVRFTWNIDAHGYLKEISEELPKTIG-NYAFKMIGMRLCDVSDILHIDPNNHIGDLL--K 138
                W  D  G     ++   + +G +    +IG    ++  + H+       D+L   
Sbjct: 223 PFAVFWK-DRDGRFLGCNDAFAQHLGVSSPQDVIGRTDLELGLLPHVAAAYRRDDVLVMD 281

Query: 139 RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRG-FGIVHVNRVDNDPRALG 197
              T  G    +        + +  + +P+   + +     G F  +   R         
Sbjct: 282 SGQTRLGIEEPFQRSN-GEELWLLTSKVPLRDPDGKVRSVLGIFADLTDRRRQEATLQKA 340

Query: 198 KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257
               K+++ L E +   ++ E+ +  + + +     L  K +V  L             E
Sbjct: 341 LWQVKQYAALLETQV-VAASERVRRLMEASRDAVFVLDEKGRVLELNPVAERLLGRTAAE 399

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
              +     +  PE+   H        +       Q       E +S +   SL    + 
Sbjct: 400 LLGMPFDLLAPEPERLVLHHALEELLARGTMRLEEQGLRSAQGERISVQLIGSLQEAGEA 459

Query: 318 GENLTPE 324
              L   
Sbjct: 460 RRQLVVA 466



 Score = 50.8 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 28/262 (10%), Positives = 75/262 (28%), Gaps = 16/262 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD-ILHIDPNNHIGDLLKRQNTWY 144
            + +D  G + E++    + +G  A +++GM    ++     +  ++ + +LL R     
Sbjct: 373 VFVLDEKGRVLELNPVAERLLGRTAAELLGMPFDLLAPEPERLVLHHALEELLARGTMRL 432

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            +  L   +G  + V +  +        R+        +               + D+  
Sbjct: 433 EEQGLRSAQGERISVQLIGSLQEAGEARRQLV------VAQDLTEKRRMEQQNIQNDRLA 486

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
           +           +      + +           ++ ++ +L        + L   +  + 
Sbjct: 487 AMGVLTAGIAHEINNPISYMLANLDLLRQWEDDLEQQLPALPGLPPELLERLPEARSVIA 546

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
              E SL   +    + L  +T +    +  +  +     L                 L 
Sbjct: 547 DCIEGSLRIGDIVRGMRLLSHTGQGDVLSPVDIHRSLDAVLHIAQG-----ELKHTARLK 601

Query: 323 PETVDKCPIPFFVYSHGNLFYA 344
            +     P    + S G L   
Sbjct: 602 QDYARNLP--MVLGSEGRLGQV 621


>gi|39937200|ref|NP_949476.1| sensor histidine kinase [Rhodopseudomonas palustris CGA009]
 gi|39651058|emb|CAE29581.1| sensor histidine kinase with a PAS domain [Rhodopseudomonas
           palustris CGA009]
          Length = 348

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 133/345 (38%), Positives = 216/345 (62%), Gaps = 7/345 (2%)

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
           + +  G I + NR+   LFGY  + +++          + + +  YL  I S   +  L+
Sbjct: 1   MFDEAGEISAANRSAEALFGYDGDVLVQHNLIELFAPESRAAVLDYLDSIKSGRAQSVLD 60

Query: 527 K--ITLGSTKEEKLLSLRIIIKKLP-FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
                LG  +E  L  L + I +       +     D+S+ ++ + +LS AK++AE+ + 
Sbjct: 61  HGLEALGQVREGGLFPLSMTIGRTRTDGPNFFAVFRDLSQLQRTETELSQAKRLAERATG 120

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
            K+D LAR+SHEIR PL AIIGF+EV+  +RFGPLGN RY++Y   I  SG  V+ IV+D
Sbjct: 121 AKADVLARLSHEIRAPLNAIIGFAEVMIEERFGPLGNERYVDYMKDIRASGERVIGIVDD 180

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703
           LLD+S+IE+GK++L F  ++L+E V ++++++Q  AN +RI+IRTS A+++P ++AD ++
Sbjct: 181 LLDLSRIETGKLDLAFASINLNELVEQSVAVMQPRANRERIIIRTSLAHSLPTVVADAQA 240

Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
           ++QI +N++S +IH   + GQ+I+ST  +   EV+LRVRDTG  + + EL  A++PF + 
Sbjct: 241 LRQIIMNLISTSIHLANAAGQVIVSTALSDAGEVVLRVRDTGSRLNDDELAAALQPF-RT 299

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           P+ +       G+ L L KA+V+AN   F+I S P  GTLIE++F
Sbjct: 300 PSDRTEAA---GVSLSLTKALVEANRATFHIKSAPQSGTLIEVVF 341


>gi|294506227|ref|YP_003570285.1| two-component system sensor protein [Salinibacter ruber M8]
 gi|294342555|emb|CBH23333.1| two-component system sensor protein [Salinibacter ruber M8]
          Length = 1111

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 118/782 (15%), Positives = 259/782 (33%), Gaps = 87/782 (11%)

Query: 98   ISEELPKTIGNYAF-KMIGMRLCDVSDILHIDPNNHIGDLLKRQ-NTWYGKTTLWPIEGT 155
            + E+    +G          R        H +           +      +      +GT
Sbjct: 347  VGEKAASVLGLSPDPDGFYDRFVQCIPPEHRERYRASTKAAAAEHRPARMELPFERPDGT 406

Query: 156  NLYVPIDLAALPIYSRNREFSGFRGFGI-VHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214
               + +  +++P    N     F G  + +   R         +   +   H       H
Sbjct: 407  --RIWLLCSSMPERRENETL--FNGVLLDITDRREAEQAVQAERDRFETLFHNLPTPVVH 462

Query: 215  SSVEKEKYDIFSQQSPPP---------HLRMKNKVSSLTEYYAHK--DDVLKTEKYPLLT 263
               ++E +      +             +R K+  + +    A    D + +        
Sbjct: 463  GWSDEEGHLRVQTVNDTFESVFGIGEEQIRTKDLQAEIVPPDAQDEADSIRRWLLAGEPV 522

Query: 264  SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
              E      +      +    +    G  +  +     Y       +          L  
Sbjct: 523  DREVRRETSDGTRDFRVQVTLRDDGPGPTEGYAI----YTDITERKTKERELRTRGRLLK 578

Query: 324  ETVDKCPIPFFVYSHG--NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
            +  +      ++       + + + ++  +    +    +             +   +  
Sbjct: 579  QLRENITDVVWMSPADKSEIEFISDAYEEIWGRPTDQLHDHPNA-----VVEAIHPADRE 633

Query: 382  KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
            +      + R    A    + +         +         +        G+  +  + +
Sbjct: 634  RVQAALDTQRKDPDAYEETYRVVQPDGTVRWVRDRAAGVYGEDGRLERIIGVATDITERK 693

Query: 442  INKRKMEIEVMQLCSILEATSDGIAIINRE-----GI--ILSTNRAVSKLFGYPVEDILR 494
              ++ ++    ++ ++   TS    ++  E     G   +   N    ++FGYPV  +  
Sbjct: 694  RREQVLQARQDKVEALYTTTSQ---VLRAESTTAVGRSIVDLVN----EVFGYPVVIVRF 746

Query: 495  KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE------------------- 535
            +     +       +  ++    S D+       T     +                   
Sbjct: 747  REDECLVPVQASPDVADHVPNPSSFDVTGESVVATAFRDGDTALFDDLSAVGDSVDYGAV 806

Query: 536  --------EKLLSLRIIIKKLPFSSCYSLTMHDIS--------EWKQEKNKLSHAKKIAE 579
                        ++ +   +    + +   + +I         +  + + +L  AK+ AE
Sbjct: 807  RATAVVPIGTHGTISVAALEAGAIAGFDRRLIEILSTYAALVLDRIEYEGELVSAKEEAE 866

Query: 580  KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR--------YIEYANYID 631
            + +  KS FLA +SHEIRTPLT+IIGF+EVI ++    L +            ++A+ I+
Sbjct: 867  RLNRMKSAFLANMSHEIRTPLTSIIGFAEVIGDEATSLLEHSDSPPDAVTALDQFADLIE 926

Query: 632  RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
             SG+ +L+ ++ +L++S++E+G+M L   P+ L + V+EA  L +  A  + I ++   A
Sbjct: 927  ESGHRLLETLDTVLNLSRLEAGEMELDCSPLDLADEVAEATDLFEPQALTEGIDLQGETA 986

Query: 692  NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751
                    D   ++    N++SNA+ +T  GG + +       ++V L V DTGVGM   
Sbjct: 987  EGPLWARVDEGGLRIALQNLISNALKYTEEGGTVRVRAGRR-GDDVALEVEDTGVGMDPD 1045

Query: 752  ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
             + +  +PF Q         EGTGLGL + K  ++   G   + +    G+   +  P  
Sbjct: 1046 HVPELFEPFRQESEGTGRTYEGTGLGLAVTKQAIEQMGGTIAVETAKGDGSCFTVRVPAA 1105

Query: 812  DT 813
            D 
Sbjct: 1106 DA 1107



 Score =  180 bits (457), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 60/520 (11%), Positives = 135/520 (25%), Gaps = 34/520 (6%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           DA G L   +  L +  G  A  +    + DV   L+ D        +   +    +   
Sbjct: 212 DADGQLLLANPRLCEMTGYDADTLTRRHMWDVDVSLNPDDARARWATMAPGDQHRREGRY 271

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
              EG+   V +DL  + +    R+F    G+      R +N  R    RL    + L  
Sbjct: 272 RRKEGSTFPVEVDLRCIAV-DGARQFV-ATGWDTTEHRRTENALREKEARLRGLANSLPG 329

Query: 210 IKKG--HSSVEKEKYDIFSQQSPPPHLRMKNKVS---SLTEYYAHKDDVLKTEKYPLLTS 264
           +          +  Y    +++        +         +    +             +
Sbjct: 330 VTYQFYVRPGGEWGYHFVGEKAASVLGLSPDPDGFYDRFVQCIPPEHRERYRASTKAAAA 389

Query: 265 EESSLPEQEDFHTINLNQYTK--KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
           E      +  F   +  +            +N +  +   L   +            +  
Sbjct: 390 EHRPARMELPFERPDGTRIWLLCSSMPERRENETLFNGVLLDITDRREAEQAVQAERDRF 449

Query: 323 PETVDKCPIPFFVYSHG-----NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
                  P P             +   N +F  +        I      +  L A  +  
Sbjct: 450 ETLFHNLPTPVVHGWSDEEGHLRVQTVNDTFESVFG------IGEEQIRTKDLQAEIVPP 503

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
           +   +   + R           +     +      +        +  P       I  + 
Sbjct: 504 DAQDEADSIRRWLLAGEPVDREVRRETSDGTRDFRVQ---VTLRDDGPGPTEGYAIYTDI 560

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAI--INREGIILSTNRAVSKLFGYPVEDILRK 495
            + +  +R++      L  + E  +D + +   ++   I   + A  +++G P + +   
Sbjct: 561 TERKTKERELRTRGRLLKQLRENITDVVWMSPADKS-EIEFISDAYEEIWGRPTDQLHDH 619

Query: 496 P--FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553
           P      +       +   L            E+       +  +  +R     +     
Sbjct: 620 PNAVVEAIHPADRERVQAALDTQRKD--PDAYEETYRVVQPDGTVRWVRDRAAGVYGEDG 677

Query: 554 ----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
                     DI+E K+ +  L   +   E   +  S  L
Sbjct: 678 RLERIIGVATDITERKRREQVLQARQDKVEALYTTTSQVL 717



 Score = 88.9 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 27/218 (12%), Positives = 66/218 (30%), Gaps = 16/218 (7%)

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHT-----IQWNRENSLAMTFIPFEKANQF----- 424
             D  A++       D      + RL T     +  +      + F+             
Sbjct: 107 RDDALALEDAPRQGWDGDPAYETFRLSTYLGAKVVADGALYGTLCFVDRAPRQAAFDESD 166

Query: 425 -PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
                       + ++ R  + ++     +L ++ E   D I   + +G +L  N  + +
Sbjct: 167 AAALARLVQAVEQTLERRRPEARLRQTSARLEALFEEAPDMITFHDADGQLLLANPRLCE 226

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           + GY  + + R+          P         +   D  +   +      KE     + +
Sbjct: 227 MTGYDADTLTRRHMWDVDVSLNPDDARARWATMAPGDQHR---REGRYRRKEGSTFPVEV 283

Query: 544 II--KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579
            +    +  +  +  T  D +E ++ +N L   +    
Sbjct: 284 DLRCIAVDGARQFVATGWDTTEHRRTENALREKEARLR 321


>gi|170748787|ref|YP_001755047.1| multi-sensor signal transduction histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
 gi|170655309|gb|ACB24364.1| multi-sensor signal transduction histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 793

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 123/665 (18%), Positives = 247/665 (37%), Gaps = 61/665 (9%)

Query: 197 GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256
           G+RL         +                     P   +  +  ++       + VL  
Sbjct: 108 GRRLLVVRPDTRIVAAHPPLPADRTTLAAVLGDSEPLSGLGERAGAMALELPGGESVLAA 167

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS----HRNHPSLS 312
                  + + ++ +  +      +  T+ Q               L+     R      
Sbjct: 168 MHSLPGGAGQVAVLQPVEPLLRGWSARTRDQIVLIAAAAIVIVGVGLAYGLQTRQAARAD 227

Query: 313 AYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
              ++        + +     + +    G + Y + S   L  Y+   +    G ++ L+
Sbjct: 228 RAREQIRGRLETALRRGACGLWDWDIARGRI-YWSDSMYTLLGYRRQHEYLSFGDVNGLV 286

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
                 D +         +++T +        ++      + +       A+        
Sbjct: 287 HPD---DGDLYSLARGLAANQTHVD---HAFRMRGADGAYVWLRARAEVVADAADGGRHL 340

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490
            GI  +  + R  +       M+L   +EA S+   + +    ++  N     L     E
Sbjct: 341 VGIANDISEQRALEETNAAADMRLRDAVEAISEAFVLWDTGNRLVLCNSKFRHLHALSPE 400

Query: 491 DIL-RKPFTVFLEQNTPSVMNHYLTEI---LSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
           D    + +T  + +     +     E    L+    +T E        + + L +    +
Sbjct: 401 DAQAGRSYTDVMGRGVLPQVRRESPEAGMALTGMAARTFEAEL----SDGRWLQIS---E 453

Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD------------------- 587
           +      Y     DI+  K+ + +L  +++   +                          
Sbjct: 454 RRTKDGGYVSVGTDITSLKRNQEQLLASERELIETVKDLKRSRRTLELQTQQLADLAERY 513

Query: 588 ----------------FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
                           FLA +SHE+RTPL AIIGF++V++N   GPLG PRY EY   I 
Sbjct: 514 LDQKAAAEAANQAKAEFLANMSHELRTPLNAIIGFADVMENAVLGPLGTPRYTEYCRDIR 573

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
            SG+ +L +++D+LD++++E+ ++ L    +S + AVS A++ V+  A EK I +     
Sbjct: 574 ESGSHLLSMIDDILDMARLEARRVRLSPRAISAETAVSAALAPVEAAAREKAITVSVDVV 633

Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751
             +  +LAD +++ QI  N++ NA+ FTP+GG++ +     +     L + D G+G+   
Sbjct: 634 PGL-ELLADPQAIGQILANLVQNAVKFTPAGGRVAVR-GRRAGACTHLYIEDNGIGIPRT 691

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
           +L +  +PF Q+        +G+GLGL + ++MV+ + G   I S    GT++ +  P  
Sbjct: 692 DLARLGRPFTQVERQMTRCHKGSGLGLAITRSMVELHGGSLRIRSEETVGTIVLVRLPAT 751

Query: 812 DTSHP 816
               P
Sbjct: 752 PAERP 756


>gi|158520884|ref|YP_001528754.1| PAS/PAC sensor hybrid histidine kinase [Desulfococcus oleovorans
           Hxd3]
 gi|158509710|gb|ABW66677.1| PAS/PAC sensor hybrid histidine kinase [Desulfococcus oleovorans
           Hxd3]
          Length = 905

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 102/772 (13%), Positives = 223/772 (28%), Gaps = 66/772 (8%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D       ++     T+G    ++ G     +      D    +            ++  
Sbjct: 27  DKEARFLYLNSPNEATLGYTPAELQGKNAFSLIHPDDKDRMVSLMAKAFDGRLDKIQSLT 86

Query: 150 WPIEGTNLYVP-IDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           + I      V  +      +   +      +   +        + R      +++   + 
Sbjct: 87  YRIINKQGRVRHVQATFDTVRDGSGNLD--KLLCVADDITEKVEIRTAFAESEQRLRAVM 144

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           +      +            +       +  + +L         V +     LL   E  
Sbjct: 145 DTVPVAIAEIDCSGRFQFVNAAY-CEVFEYSLEALERMSVKDLAVSEESGQRLLLLLERL 203

Query: 269 LPEQEDFHTINLNQYTKKQYFGTL-------QNNSKESFEYL----SHRNHPSLSAYFDE 317
           + EQ +         T+      +       ++       ++           +S    +
Sbjct: 204 VEEQPEPQRWEGRNRTRTGRILDVVVDWNYRRDEEGRVSGFVTAISDVTEQKKMSEALVQ 263

Query: 318 GENLTPETVDKCPIPFFVY---SHGN---LFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
                    +       VY     G    +   N +   +    +   I           
Sbjct: 264 SRQRYQAMFNHIASGVVVYQPVDDGEDFVIIDFNRTAEKIEGISAEAVIGKK----VTEV 319

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
            P + D   +        +               +   +   +   +  A      +   
Sbjct: 320 FPGIRDMGLLDLFRRVSENGRPRH---HPACFYKDGRTTGWRSNYVYRLATGEIVTVY-- 374

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
               ++ +    +  +    ++  +++E ++D I ++N EG  L +N  V      P + 
Sbjct: 375 ---NDETERVRAREALRESELRFRALVEYSADHIFMLNSEGAYLFSNERVEHFHRTPGDT 431

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
           ++ +  T              +  +L+     + E    G       +     I K    
Sbjct: 432 VIGRRLTDLYPPELADRYQRLVAHVLADGCGTSFEYEVQGPDDTHYYVETLYPIYKEGKP 491

Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKE----------------SSHKSDFLARVSHE 595
                   D++  KQ + +L       E+                     S   + ++H+
Sbjct: 492 WAVGGICRDVTTRKQYEKELQQKTGELERALKDLRQAQRRFVDQERQRALSQMASGIAHD 551

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
               L++I GFS+++          P    Y   I+ +      +V  L    +    + 
Sbjct: 552 FNNALSSIQGFSDLLLQSPEKFSDTPLVKRYVGLINTAARDAAQVVRRLRKFYRPSDEE- 610

Query: 656 NLHFEPVSLDEAVSEAISLVQL------YANEKRILIRTSFANNIPRILADLRSVKQIAL 709
               EPV ++  + EA++L +        A    I++ T F   +     +   + ++  
Sbjct: 611 --TIEPVDVNRLIKEAVALTEPVWKHKTQARGAPIIVETRFQEQL-SASGNRTELNEVLT 667

Query: 710 NILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
           N++ NA+   P GG +   T   +   ++L V DTGVGM      + M PF         
Sbjct: 668 NLIFNAVDAMPEGGSLSFGTRREA-GWIVLEVSDTGVGMDATVRRQCMNPFFTTKGEA-- 724

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY-DTSHPHDCI 820
              G+GLGL   + +V  + G+  I S P  GT   +  P   +  H  D I
Sbjct: 725 ---GSGLGLATVQGIVARHQGQIEIVSEPGNGTTFVLRIPAAVNREHSTDMI 773



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/139 (14%), Positives = 48/139 (34%), Gaps = 6/139 (4%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           ++  E+ +L   LE TS  +A+ ++E   L  N       GY   ++  K     +  + 
Sbjct: 6   QLSDELARL--FLENTSSMVAVFDKEARFLYLNSPNEATLGYTPAELQGKNAFSLIHPDD 63

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDI 561
              M   + +     L +          K+ ++  ++     +   S           DI
Sbjct: 64  KDRMVSLMAKAFDGRLDKIQSLTYRIINKQGRVRHVQATFDTVRDGSGNLDKLLCVADDI 123

Query: 562 SEWKQEKNKLSHAKKIAEK 580
           +E  + +   + +++    
Sbjct: 124 TEKVEIRTAFAESEQRLRA 142



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/407 (10%), Positives = 101/407 (24%), Gaps = 28/407 (6%)

Query: 65  TNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI 124
           T + +SE           V     ID  G  + ++    +        +  M + D++  
Sbjct: 131 TAFAESEQRLRAVMDTVPVA-IAEIDCSGRFQFVNAAYCEVFEYSLEALERMSVKDLAVS 189

Query: 125 LH---IDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF 181
                         + ++      +       G  L V +D             SGF   
Sbjct: 190 EESGQRLLLLLERLVEEQPEPQRWEGRNRTRTGRILDVVVDWNYR--RDEEGRVSGF--V 245

Query: 182 GIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS 241
             +              +  +++  +         V +   D         +   +    
Sbjct: 246 TAISDVTEQKKMSEALVQSRQRYQAMFNHIASGVVVYQPVDDGEDFVIIDFNRTAEKIEG 305

Query: 242 ---------SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL 292
                     +TE +    D+   + +  ++           F+        +  Y   L
Sbjct: 306 ISAEAVIGKKVTEVFPGIRDMGLLDLFRRVSENGRPRHHPACFYKDGRTTGWRSNYVYRL 365

Query: 293 QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLL 351
               +    Y              E E      V+      F + S G   ++N      
Sbjct: 366 -ATGEIVTVYNDETERVRAREALRESELRFRALVEYSADHIFMLNSEGAYLFSNERVEHF 424

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411
            +      I     L+ L           +   +L  +D    +    +     +  +  
Sbjct: 425 HRTPGDTVIGRR--LTDLYPPELADRYQRLVAHVL--ADGCGTSFEYEVQG--PDDTHYY 478

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458
             T  P     +  +     GI  +    +  +++++ +  +L   L
Sbjct: 479 VETLYPIY---KEGKPWAVGGICRDVTTRKQYEKELQQKTGELERAL 522


>gi|121603274|ref|YP_980603.1| PAS/PAC sensor signal transduction histidine kinase [Polaromonas
           naphthalenivorans CJ2]
 gi|120592243|gb|ABM35682.1| PAS/PAC sensor signal transduction histidine kinase [Polaromonas
           naphthalenivorans CJ2]
          Length = 778

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 107/789 (13%), Positives = 226/789 (28%), Gaps = 75/789 (9%)

Query: 57  QNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGM 116
                 S+     SE  F         +  W +   G     ++      G      +G 
Sbjct: 16  TPGRKRSDEAGRASEAQFRLLMDAMP-QIVWMMRPDGQATYFNQRWLDYSGWSLKDSLGH 74

Query: 117 RLCDVSDILH-IDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREF 175
               +      +  +  +            +  L   +G  +Y  +              
Sbjct: 75  GWIGLVHPDDSLRVSRLLVQACGGGEPCEIECRLRRADG--VYRWMLGRTAAQSDAAGRT 132

Query: 176 SGFRGFGIVHVNRVDND-PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS----- 229
           +  +  G +            L K L          + G  ++E  +  +          
Sbjct: 133 T--QWLGTLTDIDELKQSREILEKDLAMNRIAGRVARLGGWAIELPERRLIWSDENCLIH 190

Query: 230 --PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287
             PP +     +       +  +   +                      T        + 
Sbjct: 191 DVPPGYQPTLEEGIGF---FFPEHRAIVARHVQDCAEHGIPYEFVLPKRTATGRHIWVRS 247

Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEG----ENLTPETVDKCPIPFFVYSHG-NLF 342
               +++ + +           S     +      E     T++     F +        
Sbjct: 248 IAEAVRDEAGKIVSIQGAFQDISEQKEAEARMLALEARLTATLESITDGFCLIDKDWKFT 307

Query: 343 YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT 402
           + N     + K    D +            P+       +   L   ++  I    RL T
Sbjct: 308 FMNGQAQRMLKRCPEDLLGKILWQEF----PEAVGTRIERECRLSMQEQRTI----RLET 359

Query: 403 IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
                +        P E                +    R  + ++ +    L + +   +
Sbjct: 360 FYLPLKTWFHFHIYPTE--------AGLAVYFQDITQRRTEQAQLRL----LETAVSRLN 407

Query: 463 DGIAI-----INREGI-ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           D + I      +  G  I+  N A  +  GY   DI+ K  T+    NT       +   
Sbjct: 408 DMVVIMEAEPFDASGRRIVFVNDAFERQTGYSRSDIIGKTPTLLWGANTCHPEVERILSA 467

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLS 572
           +     Q +    +  TK  K L +   I  +   S     +     DI+E +Q++ ++ 
Sbjct: 468 MDN--WQPVRAEVVIYTKAGKELWVETDIAPIANVSGKFTHWVAVERDITERRQQQQEIL 525

Query: 573 HAKKIAEK-----------ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
                 E+            +     F   VSH++R+PL  I  FS+++     G + + 
Sbjct: 526 SLNGELEERVLLRTAQLATATRELESFAYSVSHDLRSPLNTIHAFSQLLLKIDGGQISD- 584

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
           +   Y + I      + D++  LL ++++   +  +  E V L           +    +
Sbjct: 585 KGKHYLDRIGVGVKQMGDLIEGLLALAQL--SREQIKSEQVDLSNIARRIEQDCREREPQ 642

Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG--QIIISTTHTSNEEVIL 739
           ++  +R     +      D R +  +  N+L NA  FT       I + +    + + + 
Sbjct: 643 RQAQLRIQ---DGLSAQGDARLLSAVFQNLLGNAWKFTSRQSLAHIEVGSESGVDGDTVF 699

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V+D G G       K    F ++ +       GTG+GL   K +++ + G+ +  S   
Sbjct: 700 FVKDNGAGFDMAFAHKLFGTFERLHSPGD--FSGTGIGLATVKRIIERHGGRVWAESKLN 757

Query: 800 KGTLIEIIF 808
           +G       
Sbjct: 758 EGARFFFTL 766



 Score =  110 bits (275), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 44/422 (10%), Positives = 115/422 (27%), Gaps = 42/422 (9%)

Query: 182 GIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR---MKN 238
           G V            G+  + +F  L +       + +                   +K+
Sbjct: 11  GTVPGTPGRKRSDEAGRASEAQFRLLMDAMPQIVWMMRPDGQATYFNQRWLDYSGWSLKD 70

Query: 239 KVSSLTEYYAHKDDVLKTEKYPLLT-SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297
            +        H DD L+  +  +           +      +              + + 
Sbjct: 71  SLGHGWIGLVHPDDSLRVSRLLVQACGGGEPCEIECRLRRADGVYRWMLGRTAAQSDAAG 130

Query: 298 ESFEYLSHRNHP------SLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLL 351
            + ++L                  D   N     V +    + +         +    L+
Sbjct: 131 RTTQWLGTLTDIDELKQSREILEKDLAMNRIAGRVARLG-GWAIELPERRLIWSDENCLI 189

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411
                     +  G+          ++ AI    +       I     L   +      +
Sbjct: 190 HDVPPGYQPTLEEGIGFFF-----PEHRAIVARHVQDCAEHGIPYEFVL-PKRTATGRHI 243

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471
            +  I     ++  + +   G   +  + +  + +M     +L + LE+ +DG  +I+++
Sbjct: 244 WVRSIAEAVRDEAGKIVSIQGAFQDISEQKEAEARMLALEARLTATLESITDGFCLIDKD 303

Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
                 N    ++     ED+L K       +                 +   +E+    
Sbjct: 304 WKFTFMNGQAQRMLKRCPEDLLGKILWQEFPE----------------AVGTRIERECRL 347

Query: 532 STKEEKLLSLRIIIKKL---------PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES 582
           S +E++ + L      L         P  +  ++   DI++ + E+ +L   +    + +
Sbjct: 348 SMQEQRTIRLETFYLPLKTWFHFHIYPTEAGLAVYFQDITQRRTEQAQLRLLETAVSRLN 407

Query: 583 SH 584
             
Sbjct: 408 DM 409


>gi|288960032|ref|YP_003450372.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
 gi|288912340|dbj|BAI73828.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
          Length = 751

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 99/403 (24%), Positives = 174/403 (43%), Gaps = 52/403 (12%)

Query: 451 VMQLCSILEATSDGIAIIN---REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
                +++EA+  GIA+ +    +  I+  NRA  ++ GY  E+++ +         T +
Sbjct: 69  AAMFAAVVEASGAGIAVTDATRPDHPIVYCNRAFLEMIGYTAEEVIGRDGGFLHGPATDA 128

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISE 563
                     +L   + L    +   K+       + ++ +P         + T  D+++
Sbjct: 129 ETAAA--IRAALAEARPLSVEVVNHRKDGSAFWNALSLRPVPGPDGRARWITATCADVTD 186

Query: 564 WKQEKNKLSHAKKIAEK----------------------------ESSHKSDFLARVSHE 595
            ++ + +L  A++   +                             S  KS FLA +SHE
Sbjct: 187 SRRSQEELRAAEEQLTRLAAETFALAEKLDGAREEAEDARVAAENASRAKSRFLAMMSHE 246

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           +RTP+TA+IG  +++     G   N + I     +  S + ++ I+ND+LD SKIE+G++
Sbjct: 247 LRTPMTAVIGMGDLLL----GTGLNEQQIALVKTLRSSADTLMTILNDVLDFSKIEAGQL 302

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSN 714
            L     SL   V + + L  + A  K + +  S A N PR I  D   ++Q+  N++SN
Sbjct: 303 TLEEIDFSLPRLVEDVVQLFLVRAAAKGLSLSASIAENTPRHIRGDPTRLRQVLYNLVSN 362

Query: 715 AIHFTPSGGQIIISTTHTSNE---------EVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           AI FT  G  I I+                 +   V+D G+GMT  +  +    F Q   
Sbjct: 363 AIKFTDRGA-IEIAVWSPDPPASPLSASPMTLRFEVQDDGIGMTADQRARLFDAFVQADA 421

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           S   +  GTGLGL + K +V+A  G+  + STP +G+      
Sbjct: 422 STSRKYGGTGLGLSICKRLVEAMGGEISVASTPGRGSTFRFSI 464



 Score = 54.3 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 16/141 (11%), Positives = 37/141 (26%), Gaps = 11/141 (7%)

Query: 318 GENLTPETVDKCPIPFFVYSHGN----LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
              +    V+       V         + Y N +FL +  Y + + I   GG        
Sbjct: 68  DAAMFAAVVEASGAGIAVTDATRPDHPIVYCNRAFLEMIGYTAEEVIGRDGG----FLHG 123

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
             +D      +    ++   ++     H       ++                       
Sbjct: 124 PATDAETAAAIRAALAEARPLSVEVVNHR---KDGSAFWNALSLRPVPGPDGRARWITAT 180

Query: 434 EPEDVDTRINKRKMEIEVMQL 454
             +  D+R ++ ++     QL
Sbjct: 181 CADVTDSRRSQEELRAAEEQL 201



 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/180 (8%), Positives = 43/180 (23%), Gaps = 9/180 (5%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKRQNTWYGKTTL 149
               +   +    + IG  A ++IG     +       +    I   L        +   
Sbjct: 91  PDHPIVYCNRAFLEMIGYTAEEVIGRDGGFLHGPATDAETAAAIRAALAEARPLSVEVVN 150

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGF-GIVHVNRVDNDPRALGKRLDKKFSHLH 208
              +G+       L+  P+   +      R               +   +  +++ + L 
Sbjct: 151 HRKDGSAF--WNALSLRPVPGPDGR---ARWITATCADVTDSRRSQEELRAAEEQLTRLA 205

Query: 209 EIKKGHSSVEKEKYDIFSQQ--SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
                 +       +       +     R K++  ++  +              LL    
Sbjct: 206 AETFALAEKLDGAREEAEDARVAAENASRAKSRFLAMMSHELRTPMTAVIGMGDLLLGTG 265


>gi|161830206|ref|YP_001596560.1| putative aerobic respiration control sensor protein arcB [Coxiella
           burnetii RSA 331]
 gi|215919011|ref|NP_819664.2| putative aerobic respiration control sensor protein arcB [Coxiella
           burnetii RSA 493]
 gi|161762073|gb|ABX77715.1| putative aerobic respiration control sensor protein arcB [Coxiella
           burnetii RSA 331]
 gi|206583896|gb|AAO90178.2| two component system histidine kinase [Coxiella burnetii RSA 493]
          Length = 630

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 101/504 (20%), Positives = 195/504 (38%), Gaps = 43/504 (8%)

Query: 313 AYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
              +  +      +D+      + +   ++   N +     + K    I           
Sbjct: 13  KLMESQQAQFEHLIDRADDLVVIVNPDYSIIDLNNAAEQFYQCKREAVIGRN-------- 64

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
                        +   +        A L T + + +           +  Q    +   
Sbjct: 65  -------------LFEIAVEEEWQLPASLLTHRRSIKRISWSVVSLPPRYGQKGYMLTGQ 111

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-PVE 490
            I      ++I           L +IL      I   +R  + L  N   +KL G+   E
Sbjct: 112 VISKSVNASQI----------FLENILYNIPQYILWKDRNFVYLGCNHNFAKLVGFETPE 161

Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
            I+ K           + +     E+L       +E+       +E +  +  +  +   
Sbjct: 162 SIIGKTDFDLWRSQGANSIRPTDVEVLEGKQLVDVEQSLSLPNGKEGVFLISKVPLRDER 221

Query: 551 SS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
           +      +   DI+E KQ + KL  AK  AE     KS+F+A +SH++RTP+  I+G ++
Sbjct: 222 NEIIGILVVGTDITERKQNEQKLIEAKLQAELSDRAKSEFIANISHDLRTPINGILGIAQ 281

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
           +           P      N +  S NL+L +V D+LD +++E GK+ L +   +L + V
Sbjct: 282 IFNMHEHTKKQEP----LINDLSASANLLLGLVEDILDFARLEVGKLELKYSTFNLRQLV 337

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIII 727
           +  +        +K+I I   +  ++P  I+++   +++I LN++ NA+ FT  G QI +
Sbjct: 338 TFLVKTFSFQTQQKQIKINVYYDASLPDSIVSEPNYIRRIFLNLIGNAVKFTEKG-QIDV 396

Query: 728 STTHTSN--EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
           +     N    + + V+DTG+G+   +L      F +       R EG GLGL + K ++
Sbjct: 397 TVNLEGNKPAMLKILVKDTGIGIPKDKLNTIFDRFSRATPVYSSRYEGLGLGLSIIKRLL 456

Query: 786 DANMGKFYIFSTPAKGTLIEIIFP 809
           D   G+ ++ S   +G+   +  P
Sbjct: 457 DNLGGEVHVSSIENEGSTFTLTIP 480



 Score = 48.9 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/100 (14%), Positives = 35/100 (35%)

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
             + K+ ME +  Q   +++   D + I+N +  I+  N A  + +    E ++ +    
Sbjct: 8   ESVRKKLMESQQAQFEHLIDRADDLVVIVNPDYSIIDLNNAAEQFYQCKREAVIGRNLFE 67

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
              +    +    LT   S+               ++  +
Sbjct: 68  IAVEEEWQLPASLLTHRRSIKRISWSVVSLPPRYGQKGYM 107


>gi|186686039|ref|YP_001869235.1| multi-sensor signal transduction histidine kinase [Nostoc
           punctiforme PCC 73102]
 gi|186468491|gb|ACC84292.1| multi-sensor signal transduction histidine kinase [Nostoc
           punctiforme PCC 73102]
          Length = 503

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 88/382 (23%), Positives = 171/382 (44%), Gaps = 13/382 (3%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR---KPF 497
              +R++     QL ++L + SD +   N +G +   N A   L G+  +D L       
Sbjct: 123 HQLERELRQNRDQLATLLNSISDAVIATNEQGKVTFMNPAAETLTGWQQKDALGNEAANI 182

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SC 553
              +++ T +++ + +T++L       LE+ T    ++ K + +      L       + 
Sbjct: 183 FHIVDEATDTILENPVTKVLREQQVVYLEEFTSLIRRDGKRVPIGDSASPLKEGPDKING 242

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
             +   D+S+ +Q    L  A +  ++ +  KS F++ VSHE R PLT I    E +   
Sbjct: 243 VVVVFWDLSDRRQT-KVLEKALEKEQELNRLKSLFISTVSHEFRNPLTVIQTAVE-LIEM 300

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
           + G L + +   Y   I  +   +  ++ ++L + + E+ K+  +  P++L++   E I 
Sbjct: 301 KGGNLTDEKRGIYLKRIQGAVQSMEKLMEEVLFVGRAEAKKLVYNPAPLNLEQFCLELIK 360

Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
                       +  +  ++    + D   +  +  N+LSNAI ++P GG+I  +     
Sbjct: 361 DFS-IVESSECEVVFTCHSDRTDAVMDEGLLNYMFGNLLSNAIKYSPRGGKIQFNLICDP 419

Query: 734 NEEV-ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
            E+V I  ++D G+G+   +  +  + F +   S     +GTGLGL + K  VDA+ G+ 
Sbjct: 420 IEKVAIFYIQDQGMGIPEADQARLFESFYR--GSNVQSIKGTGLGLVIVKRCVDAHRGQI 477

Query: 793 YIFSTPAKGTLIEIIFPLYDTS 814
            + S    GT   +I PL   S
Sbjct: 478 SVTSQIGVGTTFTVILPLNSDS 499



 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/154 (11%), Positives = 46/154 (29%), Gaps = 8/154 (5%)

Query: 311 LSAYFDEGENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
           L     +  +     ++            G + + NP+   LT ++  D +      +  
Sbjct: 125 LERELRQNRDQLATLLNSISDAVIATNEQGKVTFMNPAAETLTGWQQKDALGNE-AANIF 183

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
               + +D     PV     ++  +        I+ + +  + +            +   
Sbjct: 184 HIVDEATDTILENPVTKVLREQQVVYLEEFTSLIRRDGKR-VPIGDSASPLKEGPDKING 242

Query: 430 QNGIEPEDVDTRIN---KRKMEIEVM--QLCSIL 458
              +  +  D R     ++ +E E    +L S+ 
Sbjct: 243 VVVVFWDLSDRRQTKVLEKALEKEQELNRLKSLF 276



 Score = 38.9 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 18/117 (15%), Positives = 38/117 (32%), Gaps = 6/117 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN----NHIGDLLKRQNTWY 144
            +  G +  ++       G      +G    ++  I+    +    N +  +L+ Q   Y
Sbjct: 150 TNEQGKVTFMNPAAETLTGWQQKDALGNEAANIFHIVDEATDTILENPVTKVLREQQVVY 209

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
            +     I      VPI  +A P+     + +G     +          + L K L+
Sbjct: 210 LEEFTSLIRRDGKRVPIGDSASPLKEGPDKINGV--VVVFWDLSDRRQTKVLEKALE 264


>gi|22124046|ref|NP_667469.1| aerobic respiration control sensor protein ArcB [Yersinia pestis
           KIM 10]
 gi|45443540|ref|NP_995079.1| aerobic respiration control sensor protein ArcB [Yersinia pestis
           biovar Microtus str. 91001]
 gi|51597792|ref|YP_071983.1| aerobic respiration control sensor protein ArcB [Yersinia
           pseudotuberculosis IP 32953]
 gi|108809739|ref|YP_653655.1| aerobic respiration control sensor protein ArcB [Yersinia pestis
           Antiqua]
 gi|108813597|ref|YP_649364.1| aerobic respiration control sensor protein ArcB [Yersinia pestis
           Nepal516]
 gi|145597658|ref|YP_001161734.1| aerobic respiration control sensor protein ArcB [Yersinia pestis
           Pestoides F]
 gi|153950296|ref|YP_001399462.1| aerobic respiration control sensor protein ArcB [Yersinia
           pseudotuberculosis IP 31758]
 gi|153997330|ref|ZP_02022430.1| aerobic respiration control sensor/response regulatory protein
           [Yersinia pestis CA88-4125]
 gi|165928121|ref|ZP_02223953.1| putative aerobic respiration control sensor protein ArcB [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|165937545|ref|ZP_02226108.1| putative aerobic respiration control sensor protein ArcB [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|166011304|ref|ZP_02232202.1| putative aerobic respiration control sensor protein ArcB [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166211955|ref|ZP_02237990.1| putative aerobic respiration control sensor protein ArcB [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|167400505|ref|ZP_02306014.1| putative aerobic respiration control sensor protein ArcB [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167420652|ref|ZP_02312405.1| putative aerobic respiration control sensor protein ArcB [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167426990|ref|ZP_02318743.1| putative aerobic respiration control sensor protein ArcB [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|186896982|ref|YP_001874094.1| aerobic respiration control sensor protein ArcB [Yersinia
           pseudotuberculosis PB1/+]
 gi|218930567|ref|YP_002348442.1| aerobic respiration control sensor protein ArcB [Yersinia pestis
           CO92]
 gi|229837086|ref|ZP_04457251.1| aerobic respiration control sensor/response regulatory protein
           [Yersinia pestis Pestoides A]
 gi|229839211|ref|ZP_04459370.1| aerobic respiration control sensor/response regulatory protein
           [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229899775|ref|ZP_04514916.1| aerobic respiration control sensor/response regulatory protein
           [Yersinia pestis biovar Orientalis str. India 195]
 gi|229904091|ref|ZP_04519202.1| aerobic respiration control sensor/response regulatory protein
           [Yersinia pestis Nepal516]
 gi|294505322|ref|YP_003569384.1| aerobic respiration control sensor/response regulatory protein
           [Yersinia pestis Z176003]
 gi|21956791|gb|AAM83720.1|AE013612_13 aerobic respiration sensor-response protein; histidine protein
           kinase/phosphatase [Yersinia pestis KIM 10]
 gi|45438409|gb|AAS63956.1| aerobic respiration control sensor/response regulatory protein
           [Yersinia pestis biovar Microtus str. 91001]
 gi|51591074|emb|CAH22738.1| aerobic respiration control sensor/response regulatory protein
           [Yersinia pseudotuberculosis IP 32953]
 gi|108777245|gb|ABG19764.1| PAS/PAC sensor hybrid histidine kinase [Yersinia pestis Nepal516]
 gi|108781652|gb|ABG15710.1| PAS/PAC sensor hybrid histidine kinase [Yersinia pestis Antiqua]
 gi|115349178|emb|CAL22143.1| aerobic respiration control sensor/response regulatory protein
           [Yersinia pestis CO92]
 gi|145209354|gb|ABP38761.1| PAS/PAC sensor hybrid histidine kinase [Yersinia pestis Pestoides
           F]
 gi|149288967|gb|EDM39047.1| aerobic respiration control sensor/response regulatory protein
           [Yersinia pestis CA88-4125]
 gi|152961791|gb|ABS49252.1| putative aerobic respiration control sensor protein ArcB [Yersinia
           pseudotuberculosis IP 31758]
 gi|165914650|gb|EDR33264.1| putative aerobic respiration control sensor protein ArcB [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|165919895|gb|EDR37196.1| putative aerobic respiration control sensor protein ArcB [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|165989688|gb|EDR41989.1| putative aerobic respiration control sensor protein ArcB [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166206701|gb|EDR51181.1| putative aerobic respiration control sensor protein ArcB [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|166961458|gb|EDR57479.1| putative aerobic respiration control sensor protein ArcB [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167049873|gb|EDR61281.1| putative aerobic respiration control sensor protein ArcB [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167054030|gb|EDR63858.1| putative aerobic respiration control sensor protein ArcB [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|186700008|gb|ACC90637.1| multi-sensor hybrid histidine kinase [Yersinia pseudotuberculosis
           PB1/+]
 gi|229678209|gb|EEO74314.1| aerobic respiration control sensor/response regulatory protein
           [Yersinia pestis Nepal516]
 gi|229687267|gb|EEO79342.1| aerobic respiration control sensor/response regulatory protein
           [Yersinia pestis biovar Orientalis str. India 195]
 gi|229695577|gb|EEO85624.1| aerobic respiration control sensor/response regulatory protein
           [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229706029|gb|EEO92038.1| aerobic respiration control sensor/response regulatory protein
           [Yersinia pestis Pestoides A]
 gi|262363385|gb|ACY60106.1| aerobic respiration control sensor/response regulatory protein
           [Yersinia pestis D106004]
 gi|262367237|gb|ACY63794.1| aerobic respiration control sensor/response regulatory protein
           [Yersinia pestis D182038]
 gi|294355781|gb|ADE66122.1| aerobic respiration control sensor/response regulatory protein
           [Yersinia pestis Z176003]
 gi|320017096|gb|ADW00668.1| aerobic respiration control sensor/response regulatory protein
           [Yersinia pestis biovar Medievalis str. Harbin 35]
          Length = 778

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 79/374 (21%), Positives = 162/374 (43%), Gaps = 16/374 (4%)

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
                + ++  +   L S L+A+ D +   N +      NRA+  L G   + ++     
Sbjct: 142 HREQAQIELGQQSALLRSFLDASPDLVYYRNEDNEFSGCNRAMELLTGKSEKQLVGLTPK 201

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII--KKLPFSSCYSL 556
                +    +     ++   ++  T E+  +     +    LR +    ++        
Sbjct: 202 DVYAPDIAEKVMETDEKVFRHNVSLTYEQWLVYPDGRKACFELRKVPFYDRVGKRHGLMG 261

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
              DI+E K+ ++ L +        S  K+ F++ +SHE+RTPL  I+G S ++ +    
Sbjct: 262 FGRDITERKRYQDALEN-------ASRDKTTFISTISHELRTPLNGIVGLSRILLDTEL- 313

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
              +   ++Y   I  S   + +I ND++++ K+E  K+ L  +PV     +++  +L  
Sbjct: 314 ---DAEQLKYLKTIHVSAITLGNIFNDIIEMDKLERRKVQLDNQPVDFTGFMADLENLSG 370

Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
           L    K +         +P  ++AD   ++QI  N++ NA+ FT  G +I++      N+
Sbjct: 371 LLVQPKGLKFIMEPQLPLPEKVIADGTRLRQILWNLIGNAVKFTQQG-KIVVRVRREGND 429

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQI-PNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
            +I  V D+G+G+   E +K    + Q+   +      GTG+GL ++K +  +  G   +
Sbjct: 430 RLIFEVEDSGMGIPEDEQDKIFAMYYQVKDRNGGRPATGTGIGLAVSKRLAQSMGGDITV 489

Query: 795 FSTPAKGTLIEIIF 808
            ST   G+   +  
Sbjct: 490 KSTQGVGSCFTLTI 503



 Score = 41.9 bits (97), Expect = 0.49,   Method: Composition-based stats.
 Identities = 16/124 (12%), Positives = 35/124 (28%), Gaps = 5/124 (4%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN-TWYGKTTLWPIE 153
               +  +    G    +++G+   DV      +      + + R N +   +  L   +
Sbjct: 177 FSGCNRAMELLTGKSEKQLVGLTPKDVYAPDIAEKVMETDEKVFRHNVSLTYEQWLVYPD 236

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
           G       +L  +P Y R  +  G  GFG           +   +   +  +        
Sbjct: 237 GRKACF--ELRKVPFYDRVGKRHGLMGFG--RDITERKRYQDALENASRDKTTFISTISH 292

Query: 214 HSSV 217
               
Sbjct: 293 ELRT 296



 Score = 40.0 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 23/228 (10%), Positives = 55/228 (24%), Gaps = 14/228 (6%)

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ----EDFHTINLNQYTKKQYFGTLQNN 295
           +S + E        L      L       L       E+   +N     +++        
Sbjct: 73  LSVVVEQLEESRQRLSRLVDKLEVMRHRDLELNKQLTENITQLNQEIVEREKAEKAHLQV 132

Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKY 354
             +  E + HR    +     +   L    +D  P   +  +        N +  LLT  
Sbjct: 133 VDKLKEEMGHREQAQIE--LGQQSALLRSFLDASPDLVYYRNEDNEFSGCNRAMELLTGK 190

Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
                +        L      + + A K +           +      + +         
Sbjct: 191 SEKQLVG-------LTPKDVYAPDIAEKVMETDEKVFRHNVSLTYEQWLVYPDGRKACFE 243

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
                  ++  +     G   +  + +  +  +E       + +   S
Sbjct: 244 LRKVPFYDRVGKRHGLMGFGRDITERKRYQDALENASRDKTTFISTIS 291


>gi|310823304|ref|YP_003955662.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309396376|gb|ADO73835.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 1062

 Score =  308 bits (788), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 80/287 (27%), Positives = 143/287 (49%), Gaps = 11/287 (3%)

Query: 532 STKEEKLLSLRIIIKKLPFSSCYSLTMHD-ISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
             ++ + L       ++     +     D +   ++ + +L  AK+ AE+ +  K +FLA
Sbjct: 340 RLEQVRPLPPSRTQDEIKEMVGWFNAFLDNLHGRRRSEEELRQAKESAEEANRAKGEFLA 399

Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650
            +SHEIRTP+ AIIG +++  +            ++     RS   +L I+ND+LD SKI
Sbjct: 400 NMSHEIRTPMNAIIGMTQLALD----AGSPEEKRDFIVKASRSAQSLLGIINDILDFSKI 455

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIAL 709
           ++G++ +   PVSL+E +S    +    A +K I +      ++P  L  D   ++QI  
Sbjct: 456 DAGRLEIETVPVSLNELISGLADVFASAAQDKGIELLFDVDASLPAALAGDPLRLRQILQ 515

Query: 710 NILSNAIHFTPSGGQIIISTT----HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           N++SNA+ FTP+G ++++         S       VRDTG+G+   +L +  + F Q  +
Sbjct: 516 NLISNALKFTPAG-EVVVRVEKVAELASGVACRFSVRDTGIGIAAEQLPRLFQSFFQTDS 574

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
           S   +  GTGLGL ++K +V+   G+  + S P +G+       L  
Sbjct: 575 SVTRKYGGTGLGLAISKRLVELMGGRIGVDSQPGQGSCFWFELTLAR 621


>gi|331016310|gb|EGH96366.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 1195

 Score =  308 bits (788), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 95/472 (20%), Positives = 181/472 (38%), Gaps = 14/472 (2%)

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411
                   I+    L  +L+        A    +  +   + +          W R    
Sbjct: 468 WSPDRFSVIKTQPELLGILNKALEEFPVAELRSIRLKWLGSSLP-----QPSLWGRIPRW 522

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471
               +              + ++ +       +R++  ++    ++L+   + I + + +
Sbjct: 523 VFWVVALALLTGLVSLAWSSRLKVQIRQRLKAERQLNDQLAFKHALLDGIPNPIYVRDLK 582

Query: 472 GIILSTNRAVSKLFGYPVEDILRKPF--TVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
           G ++S NR+  +  G   E +  +       + +     M+     +L        ++  
Sbjct: 583 GRLISCNRSYEQSLGVSFEQMNGRRLLDVEVIPRPLAEQMHADYLALLENHQPVFSDRTI 642

Query: 530 LGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
             S K   +    +                 DI+E K  + +L  A ++A + +  KS F
Sbjct: 643 ELSGKRMNVWQWTVPFFAADGQLQGLLGGWIDITERKLLEQQLEQAVRLAAQANEAKSVF 702

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
           LA +SHEIRTP+ AIIG  E+   Q       P          RS   ++ ++ + LD++
Sbjct: 703 LASMSHEIRTPMGAIIGLLELECEQALRRGEAPTQG--LQVAHRSATELVALIGESLDLA 760

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQI 707
           +IE+G M L      L       ++L    A EK + +R   A         D   ++Q+
Sbjct: 761 RIEAGGMQLSLVVTPLQTFFEGVLALFSAQAREKGLELRLELAEQARGDYWLDPLRLRQV 820

Query: 708 ALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764
             N+L NA+ FT  G    ++ +S        V + + D+GVG+     ++  +PF Q  
Sbjct: 821 VHNVLGNALKFTRQGAVVVKVEVSDDPPDASRVRIGIMDSGVGIEPARQQQIFQPFTQAA 880

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           +    R  G+GLGL + + +V+   G   + S P KGT + +  PL   + P
Sbjct: 881 DDTAARYGGSGLGLSITRQLVELMKGDISLHSEPGKGTRVTVDVPLARVTEP 932


>gi|229819354|ref|YP_002880880.1| PAS/PAC sensor signal transduction histidine kinase [Beutenbergia
           cavernae DSM 12333]
 gi|229565267|gb|ACQ79118.1| PAS/PAC sensor signal transduction histidine kinase [Beutenbergia
           cavernae DSM 12333]
          Length = 698

 Score =  308 bits (788), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 89/459 (19%), Positives = 185/459 (40%), Gaps = 34/459 (7%)

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
            P+ +      PV           A+A +  +     +   +  + +             
Sbjct: 245 GPRPARREESTPVAATILTFAVFLAAAVVWVVNVPAGSWNVVAVLLWLLVLVAVAARQTI 304

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSI-------LEATSDGIAIINREGIILSTNRAVSKL 484
            +   +   R  +R++     +L ++       L +  DGI  ++R+G +   N A ++ 
Sbjct: 305 LVLDNERLRRGLERRVRARTAELRAVTRSRELMLSSVGDGIYGVDRDGRVTFVNPAGART 364

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMN-----HYLTEILSLDLRQTLEKITLGSTKEEKLL 539
            G+   +++ +          P          Y+ E +   +  + E   L    + K +
Sbjct: 365 LGFAAREMVGQDAHGLFHAPGPDGAPFPFDSCYIAEAIRDGITASAE-EDLYRRADGKDV 423

Query: 540 SLRIIIKKLPFSSCYSLT---MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
            + +    L   +          D+++ ++                  K++F++ +SHE+
Sbjct: 424 PVEVTASPLRDGAVVLGAVVVFRDVTQRREV--------------DRLKNEFVSVISHEL 469

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTPLT+I G   ++     GP+ + +          S   +  ++ND+L++ ++E+G   
Sbjct: 470 RTPLTSIRGSLGLLAGGAAGPISD-QARRMVTIALGSSERLTRLINDILEVERMEAGAAP 528

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716
           +      +   ++ A+  VQ  A+   + +R    +   R+ AD   V Q  +N+L NAI
Sbjct: 529 IELADHDVRTVLAAAVDQVQGLADADGVSVR--LGDVTGRVHADADRVVQTLINLLGNAI 586

Query: 717 HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
            F+  G Q+++     + E V  RV D G G+    LE     F Q+ +S      GTGL
Sbjct: 587 KFSARGSQVVV-AARPAGEFVEFRVVDHGRGIPPDRLEMIFGRFEQVDSSDAREKGGTGL 645

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
           GL +++++V+ + G+ +  STP +G+   +  P  D   
Sbjct: 646 GLAISRSIVERHGGRIWAQSTPGEGSTFFMTLPRVDEEA 684



 Score = 71.2 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 34/336 (10%), Positives = 93/336 (27%), Gaps = 22/336 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN------HIGDLLKR 139
            + +D  G +  ++    +T+G  A +M+G     +      D         +I + ++ 
Sbjct: 345 IYGVDRDGRVTFVNPAGARTLGFAAREMVGQDAHGLFHAPGPDGAPFPFDSCYIAEAIRD 404

Query: 140 QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199
             T   +  L+        VP+++ A P+            F      R     R + + 
Sbjct: 405 GITASAEEDLYRRA-DGKDVPVEVTASPLRDGAVVLGAVVVF------RDVTQRREVDRL 457

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
            ++  S +    +   +  +    + +  +  P      ++ ++    + +   L  +  
Sbjct: 458 KNEFVSVISHELRTPLTSIRGSLGLLAGGAAGPISDQARRMVTIALGSSERLTRLINDIL 517

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
            +   E  + P +   H +             L +    S             A     +
Sbjct: 518 EVERMEAGAAPIELADHDVRTVLAAAVDQVQGLADADGVSVRLGDVTGRVHADA-----D 572

Query: 320 NLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
            +    ++       F      +  A        +++ VD      G+            
Sbjct: 573 RVVQTLINLLGNAIKFSARGSQVVVAARPAGEFVEFRVVD---HGRGIPPDRLEMIFGRF 629

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
             +          T +  +     ++ +     A +
Sbjct: 630 EQVDSSDAREKGGTGLGLAISRSIVERHGGRIWAQS 665


>gi|299537174|ref|ZP_07050477.1| two-component hybrid sensor and regulator [Lysinibacillus
           fusiformis ZC1]
 gi|298727415|gb|EFI67987.1| two-component hybrid sensor and regulator [Lysinibacillus
           fusiformis ZC1]
          Length = 914

 Score =  308 bits (788), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 92/482 (19%), Positives = 190/482 (39%), Gaps = 36/482 (7%)

Query: 345 NPSFLLLTKYKSVDDIEIAGGLS---TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401
           N        ++S   +     +     L           +       +  +  A      
Sbjct: 340 NVYATKGLSHQSATALVENFDMDKQARLKQEKSFVIKRQLTANEKGIAQESYYAYDLYSS 399

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV---DTRINKRKMEIEVMQLCSIL 458
                RE    +        +   +    NG+        +  +   ++E       +I+
Sbjct: 400 VFNSKRELVAILMATREGHPHNERDIDSLNGLLNRVSIAFERILMYEEVEKSRTLNQTII 459

Query: 459 EATSDGIAIINREGIILSTNRAVS---KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           +  ++GI +++  G  +  NRA+      F    E  + K           S     L E
Sbjct: 460 DNVNEGIQLVSVTGDTILINRALCGIVNFFNLTTETSIPKE-DWLQHFQKCSAQPDELIE 518

Query: 516 ILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNK 570
            L   + ++ E  +        E  + + +    L              DI+        
Sbjct: 519 FLEASIMESFEDTRKYRYCMTAEHEIFVEVYATCLFDGQEKVGTIFVHRDITR------- 571

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
                    +    KS+ ++ VSHE+RTPL++++GF+E++  +   P    R  +Y + I
Sbjct: 572 -------EYEVDQMKSELVSTVSHELRTPLSSVLGFTELLLTKNIKP---ERQNKYIDTI 621

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
            R    + +++ND LD+ ++ESGK   + E + L+E   E ++  +    +  + +    
Sbjct: 622 HREAVRLTNLINDFLDLQRMESGKQQYNMETLQLNEIAFEIVNRFRHE-QKHNVHL-IDK 679

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
           A  +  + AD   + Q+ +N++ NAI F+P GG + I      N  + + ++D G+G++ 
Sbjct: 680 AREV-YVNADQDRLVQLFINLIGNAIKFSPQGGDVEILLE-NKNNSIQVSIKDEGIGISK 737

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            ++ +  + F +I NS + +  GTGLGL + + ++  + G+ +I S   +GT +    PL
Sbjct: 738 QDIAQLFQKFKRIDNSLRRKIGGTGLGLSICREIILKHEGEIWIESEEGQGTTVYFTLPL 797

Query: 811 YD 812
            +
Sbjct: 798 AN 799


>gi|320354510|ref|YP_004195849.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
           2032]
 gi|320123012|gb|ADW18558.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
           2032]
          Length = 1001

 Score =  308 bits (788), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 97/535 (18%), Positives = 203/535 (37%), Gaps = 54/535 (10%)

Query: 311 LSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG----- 364
             A   E      + +D  P   F +   G +   N +   +T   + D +         
Sbjct: 345 AEAALQEERKRLTDIIDFLPDATFAIDRDGTIIIWNKAIEKMTGLSATDMLGKGDYAYTV 404

Query: 365 -----GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
                    L+D     +++          +   +        + +N +    +      
Sbjct: 405 PFYGEARPQLIDLIFEDNDDVASLYPNIVREGETLTTEVFCKAL-YNGKKGAWVYAKASP 463

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
             +Q  + +       +  D +  + K++  V    ++  ATSD + ++   G IL  N 
Sbjct: 464 LHDQSGKIIGAIESIRDITDKKFTEEKLKKSVAWFKALFNATSDSVILVRPCGTILDLNE 523

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
             ++      + +  +    FL   +  +    + +IL        E+  +   +  +  
Sbjct: 524 NAARRRSLCADGMRGQNIFDFLPGESSEMRRKAIDQIL-------YERRLVQYDESREDK 576

Query: 540 SLRIIIKKLPFSSCYSLTM----HDISEWKQEKNKLSHAKKIAEKES--SHKSDFLARVS 593
             R+ +  +  +    + +     DI+E K+ + +    +    +             ++
Sbjct: 577 YYRVRLFPILDNQGDVVQVASFSRDITENKKAEEEKRKLQTQLIQSQKMEAIGTLAGGIA 636

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK-IES 652
           H+    L AI+G++E +  +      +P   +Y + ++ + N   D+V  +L+ S+ +ES
Sbjct: 637 HDFNNILGAILGYTE-MAREIIS--LDPMASKYLDRVNEAANRASDLVKQILEFSRQVES 693

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712
            +++L      +   V EAI L++       ILIR +   ++  I+AD   V QI +N+ 
Sbjct: 694 KRVSL----FPIY-IVKEAIKLLRPSLPS-TILIRQNLETSVWPIIADPTQVHQILVNLC 747

Query: 713 SNAIHFTPS-GGQIIISTTHTS--------------NEEVILRVRDTGVGMTNYELEKAM 757
           +NA H     GG + I+  +                 + V L VRDTG G+++   +K  
Sbjct: 748 TNAFHAMEKTGGVLEITLQNRELVESDVQHLSEIQPGKFVELAVRDTGDGISSEIRDKIF 807

Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
            PF    +     G+GTG+GL +   +V ++ G     S   KGT+  + FP  +
Sbjct: 808 DPFFTTKS----VGKGTGMGLSIVHGIVTSHEGFIICDSERGKGTVFRVYFPAVE 858



 Score = 77.8 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 23/163 (14%), Positives = 57/163 (34%), Gaps = 2/163 (1%)

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
           +Q      +     E  + +  + ++      +  + E    G   ++ +G ++  N+  
Sbjct: 3   DQSNPEPAELDSLQEFSELKERELQLRTTSENMKQLFELAPFGYQSLDEDGCLVEVNQTW 62

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
               G+  ++++ K F  FL  +              L +  ++E   L        +S 
Sbjct: 63  LDTLGWSRKEVIGKSFAEFLHPDWRPFFAENFPLFKELGVVTSVEFDMLRQDGSVISVSC 122

Query: 542 RIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKES 582
              I + P            DI++ K+ ++    ++KI +  S
Sbjct: 123 DGRIGRDPEGNFRQTHCFFRDITDHKKAESYRELSRKILQILS 165



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 44/288 (15%), Positives = 96/288 (33%), Gaps = 30/288 (10%)

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
            +             E +  +  +  ++ E  +L  I++   D    I+R+G I+  N+A
Sbjct: 323 RSSIALLENIASHIGEALLNKQAEAALQEERKRLTDIIDFLPDATFAIDRDGTIIIWNKA 382

Query: 481 VSKLFGYPVEDILR--------------KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
           + K+ G    D+L               +P  + L       +      I+      T E
Sbjct: 383 IEKMTGLSATDMLGKGDYAYTVPFYGEARPQLIDLIFEDNDDVASLYPNIVREGETLTTE 442

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKES 582
                    +K   +      L   S   +    ++ DI++ K  + KL  +    +   
Sbjct: 443 VFCKALYNGKKGAWVYAKASPLHDQSGKIIGAIESIRDITDKKFTEEKLKKSVAWFKALF 502

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD-IV 641
           +  SD +  V      P   I+  +E    +R       R     +++    + +    +
Sbjct: 503 NATSDSVILVR-----PCGTILDLNENAARRRSLCADGMRGQNIFDFLPGESSEMRRKAI 557

Query: 642 NDLLDISKI----ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           + +L   ++    ES +   +   V L   +     +VQ+ +  + I 
Sbjct: 558 DQILYERRLVQYDESREDKYYR--VRLFPILDNQGDVVQVASFSRDIT 603



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/290 (9%), Positives = 76/290 (26%), Gaps = 20/290 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGM---------------RLCDVSDILHIDPN 130
           T+ ID  G +   ++ + K  G  A  M+G                +L D+    + D  
Sbjct: 367 TFAIDRDGTIIIWNKAIEKMTGLSATDMLGKGDYAYTVPFYGEARPQLIDLIFEDNDDVA 426

Query: 131 NHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVD 190
           +   ++++   T   +     +        +   A P++ ++ +  G      +      
Sbjct: 427 SLYPNIVREGETLTTEVFCKALYNGKKGAWVYAKASPLHDQSGKIIGA--IESIRDITDK 484

Query: 191 NDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK 250
                  K+    F  L         + +    I          R       +       
Sbjct: 485 KFTEEKLKKSVAWFKALFNATSDSVILVRPCGTILDLNENAARRRSL-CADGMRGQNIFD 543

Query: 251 DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310
               ++ +      ++     +   +  +      +     + +N  +  +  S     +
Sbjct: 544 FLPGESSEMRRKAIDQILYERRLVQYDESREDKYYRVRLFPILDNQGDVVQVASFSRDIT 603

Query: 311 LSAYFDEGENLTPETVDKCP--IPFFVYSHGNLFYANPSFLLLTKYKSVD 358
            +   +E +      + +          + G     N     +  Y  + 
Sbjct: 604 ENKKAEEEKRKLQTQLIQSQKMEAIGTLAGGIAHDFNNILGAILGYTEMA 653



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/164 (12%), Positives = 44/164 (26%), Gaps = 6/164 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D  G L E+++    T+G    ++IG    +               L K          
Sbjct: 49  LDEDGCLVEVNQTWLDTLGWSRKEVIGKSFAEFLHPDWRPFFAENFPLFKELGVVTSVEF 108

Query: 149 -LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
            +   +G+ + V  D            F     F                + L +K   +
Sbjct: 109 DMLRQDGSVISVSCD--GRIGRDPEGNFRQTHCF--FRDITDHKKAE-SYRELSRKILQI 163

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD 251
                          ++  Q +    + ++ K      +YA + 
Sbjct: 164 LSGLGTLPESIHRILEVLKQGTKFDAVGIRLKEGEDFPFYAQRG 207


>gi|308173326|ref|YP_003920031.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens
           DSM 7]
 gi|307606190|emb|CBI42561.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens
           DSM 7]
          Length = 739

 Score =  307 bits (787), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 93/737 (12%), Positives = 237/737 (32%), Gaps = 67/737 (9%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLW 150
              + + +E   + +   A  +I   + D    +  +  N  +   LK+ + W       
Sbjct: 51  EMKIVQANEAAARMMQIEAESLINRSVLDFLYSVPQEELNKAVKKFLKKGHLWKEVPIKL 110

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
               T     +        +++     +  F ++                ++ F  L + 
Sbjct: 111 DSGATKYIEFL--------AKDGIGEDYF-FVVMRDISSKKILEREFSMNEQLFKDLFDR 161

Query: 211 KKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
                 +  +                +           ++   ++    ++      ++ 
Sbjct: 162 AVDGIVLFDKDGGFIDANLSFCKSFEIGQNELSHLSLRHFTEGENNKHLKEIWDTLGKKG 221

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
               +      +  +   +    +   +              S+     + E    E  +
Sbjct: 222 KAKGELPVKLRSGEEKLFEFTITSNLISGFYMSIMRDITEKRSMELKLFKSEERFREIFE 281

Query: 328 KCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEI--------AGGLSTLLDAPKLSDN 378
                  ++   G +  AN S   + +      +E                +        
Sbjct: 282 NAMDAIVIWSDDGRIAKANESACRIFELPMDKLVERNLCSFIVDPQKKYKQIKKKYEKYG 341

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
              + ++   ++                 ++   +                         
Sbjct: 342 EIREEMLFQMANGQYKELEFTSKRTILEGQHLTIL---------------------RNVS 380

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
           D +  ++++    ++   +   + DG  + + +  I+  N   S++ G P E++      
Sbjct: 381 DRKRMEKELRESELKFRKVFNGSMDGKVLFDNQFRIIDANPLASRILGMPDEELRAYTVP 440

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM 558
             L             +I        ++              L    K+    +      
Sbjct: 441 DILSLFDIENAGVPARKIDLEG----MDNEIPFLLSSSDSRKLEFSFKRNIIQNMNLAIF 496

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            D++E K+ + +L  +  +         +  A ++HEIR P+TA+ GF ++++    G  
Sbjct: 497 KDVTEAKELEERLRKSDTLHVV-----GELAAGIAHEIRNPMTALKGFIQLLQGSIEG-- 549

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
               +  Y N I      +  I+ + L ++K ++    + +E   + + + +   L+   
Sbjct: 550 ---EHSLYFNVITSELKRIESIITEFLILAKPQA----ILYEEKDVTQIMKDTADLLNAQ 602

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738
           AN   + I  +   NIP I  +   +KQ+ +NIL NAI   P GG   ++   +  + ++
Sbjct: 603 ANLVNVQIHLNLTGNIPPIYCEPNQLKQVFINILKNAIEVMPGGGNFYVTIQPSDKDHIL 662

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           + ++D G GM+  +L++  +PF    +       GTGLGL ++  +++ + G+ ++ S  
Sbjct: 663 ISLQDEGTGMSEDKLKRLGEPFYTTKD------RGTGLGLMVSYKIIEEHQGRIHVESEE 716

Query: 799 AKGTLIEIIFPLYDTSH 815
            KGT+  +  P+   + 
Sbjct: 717 GKGTVFHLTLPIRQNTE 733



 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 52/137 (37%), Gaps = 3/137 (2%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +    +++ ++ +   I+  T D I I ++E  I+  N A +++     E ++ +    F
Sbjct: 21  KEENDRLKSDLHRYHVIMNNTLDAIFICHKEMKIVQANEAAARMMQIEAESLINRSVLDF 80

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
           L       +N  + + L       L K             +  + K       + + M D
Sbjct: 81  LYSVPQEELNKAVKKFLKKGH---LWKEVPIKLDSGATKYIEFLAKDGIGEDYFFVVMRD 137

Query: 561 ISEWKQEKNKLSHAKKI 577
           IS  K  + + S  +++
Sbjct: 138 ISSKKILEREFSMNEQL 154


>gi|291615972|ref|YP_003518714.1| ArcB [Pantoea ananatis LMG 20103]
 gi|291151002|gb|ADD75586.1| ArcB [Pantoea ananatis LMG 20103]
          Length = 787

 Score =  307 bits (787), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 90/448 (20%), Positives = 179/448 (39%), Gaps = 18/448 (4%)

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
             +     + D        L R          R   +    + +++          +  E
Sbjct: 77  WAVYFLSVVVDQLEESRQRLARLVDKLEEMRTRDLELNQQMKETISQLNNEIADRKKAEE 136

Query: 427 NMPQNGI--EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
              Q       E       + ++E +   L S L+A+ D +   N +      NRA+  L
Sbjct: 137 AREQVMAKLREEVARREQAQIELEQQSSFLRSFLDASPDLVFYRNIDKQFSGCNRAMELL 196

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
            G   + ++        + +T + +     ++   ++  T E+        +    +R +
Sbjct: 197 TGKSEKQLIGLTPRDIYDNDTATKVLETDEKVFRHNVSLTYEQWLQYPDGRKACFEIRKV 256

Query: 545 IK--KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
               ++   S       DI+E K+        +   E  S  K+ F++ +SHE+RTPL  
Sbjct: 257 PYYDRVGKRSGLMGFGRDITERKR-------YQDALESASREKTTFISTISHELRTPLNG 309

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           I+G S ++ +       N   ++Y   I  S   + +I ND++++ KIE  K+ L  +PV
Sbjct: 310 IVGLSRILLDTDL----NQEQLKYLKTIHVSAITLGNIFNDVIEVDKIERRKVQLDNQPV 365

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPS 721
                +++  +L  L A  K +    +    +P  I  D   ++QI  N++ NA+ FT  
Sbjct: 366 DFTSFLADLENLSGLLAQPKGLKFVMAPQLPLPHKISTDGTRLRQILWNLIGNAVKFTQQ 425

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ-IPNSQQIRGEGTGLGLPL 780
           G +I++   +  +E +   V+D+G G+   E +K    + Q           GTG+GL +
Sbjct: 426 G-EIVVRVAYEQDETLRFEVQDSGQGIRQEEQDKIFAMYYQVTDQHGGKPATGTGIGLAV 484

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           ++ +  A  G   + S P +G+   ++ 
Sbjct: 485 SRRLAQAMGGDISVNSAPGQGSCFTVVI 512



 Score = 43.9 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 61/198 (30%), Gaps = 18/198 (9%)

Query: 21  NTQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIP 80
           N +   +KK +   E   +K         +     +Q  +S    ++LD+    VF    
Sbjct: 125 NNEIADRKKAEEAREQVMAKLREEVARREQAQIELEQ--QSSFLRSFLDASPDLVFYR-- 180

Query: 81  RTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ 140
                  NID        +  +    G    ++IG+   D+ D           + + R 
Sbjct: 181 -------NIDKQ--FSGCNRAMELLTGKSEKQLIGLTPRDIYDNDTATKVLETDEKVFRH 231

Query: 141 N-TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199
           N +   +  L   +G       ++  +P Y R  + SG  GFG           +   + 
Sbjct: 232 NVSLTYEQWLQYPDGRKACF--EIRKVPYYDRVGKRSGLMGFG--RDITERKRYQDALES 287

Query: 200 LDKKFSHLHEIKKGHSSV 217
             ++ +            
Sbjct: 288 ASREKTTFISTISHELRT 305


>gi|220925979|ref|YP_002501281.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans
           ORS 2060]
 gi|219950586|gb|ACL60978.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans
           ORS 2060]
          Length = 673

 Score =  307 bits (787), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 82/539 (15%), Positives = 187/539 (34%), Gaps = 44/539 (8%)

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNL--FYANPSFLLLT 352
            +  S    + +   +               VD  PI  +      L   ++N     L 
Sbjct: 5   RTGGSANTEARQLRLAAEEALRARTAELEAIVDTAPIAVWFSYDPELGEVHSNRFAAELL 64

Query: 353 KYKSVDDIEIAGG----LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
                +D+  A G       L       +       +                 ++    
Sbjct: 65  GAPPGEDLGFAAGSVDKRQALHLYRDGHELAPADDPLQRAMRGE--DVRGEELDVRLGDG 122

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468
           ++L + +      +     +       +   +   +  +     +L SIL+   + +  I
Sbjct: 123 HALHLLYNASPLRDATGAVVGGISTAVDITRSHQAEAALREREARLRSILDTAPEALITI 182

Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT--LE 526
           +  G I S +R+  +LFGY  ++++ K   + +        + YL   L    R+   + 
Sbjct: 183 DEHGAIHSFSRSAERLFGYSADEVIGKNVAMLMPSPYREEHDGYLARYLRTGERRIIGIG 242

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
           ++     K+  +  + + + ++       ++  + D++  ++ + +L  A+K+       
Sbjct: 243 RVVSAQRKDGTVFPMELAVGEVSAGDRPMFTGFIRDLTASRKIEQELRQAQKM-----EA 297

Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
                  ++H+    LT I+G  E+++ Q    +  PR +E       +      +   L
Sbjct: 298 VGQLTGGIAHDFNNLLTVILGNLEMLEAQ----IREPRQLELVKEARETAEHGAQLTERL 353

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704
           L   +    +  L      + +  ++   +++     + I ++     ++ ++  D   +
Sbjct: 354 LAFGR----RQPLRPRLTDVGQLFADLTPILR-RTLGETIQVKARLDADLWKVRVDASQL 408

Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTS--------------NEEVILRVRDTGVGMTN 750
           +   LN+  NA    P+GG++ ++  +T                  V + V DTG GMT 
Sbjct: 409 QNAILNLAINARDAMPNGGRLTLAAENTHIDAEYARQHPEVRIGRYVQIAVTDTGSGMTR 468

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
              E+A +PF            G+GLGL +       + G   ++S    GT + I  P
Sbjct: 469 EVQERAFEPFFTTKEVGT----GSGLGLSMVYGFAKQSGGHVALYSELGHGTTVRIYLP 523



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 48/531 (9%), Positives = 140/531 (26%), Gaps = 49/531 (9%)

Query: 45  CHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPK 104
             ++  +       +   + T  L++    + D  P  V F++  D        +    +
Sbjct: 9   SANTEARQLRLAAEEALRARTAELEA----IVDTAPIAVWFSY--DPELGEVHSNRFAAE 62

Query: 105 TIGNYAFKMIGMRLCDV----SDILHID------PNNHIGDLLKRQNTWYGKTTLWPIEG 154
            +G    + +G     V    +  L+ D       ++ +   ++ ++    +  +   +G
Sbjct: 63  LLGAPPGEDLGFAAGSVDKRQALHLYRDGHELAPADDPLQRAMRGEDVRGEELDVRLGDG 122

Query: 155 TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214
             L++     A P+        G  G          +   A  +  + +   + +     
Sbjct: 123 HALHLL--YNASPLRDATGAVVG--GISTAVDITRSHQAEAALREREARLRSILDTAPEA 178

Query: 215 SSVEKEKYDIFSQQSPPPHL--RMKNKVSS----LTEYYAHKDDVLKTEKYPLLTSEESS 268
                E   I S       L     ++V      +     ++++        L T E   
Sbjct: 179 LITIDEHGAIHSFSRSAERLFGYSADEVIGKNVAMLMPSPYREEHDGYLARYLRTGERRI 238

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
           +           +           + ++ +   +       + S   ++      +    
Sbjct: 239 IGIGRVVSAQRKDGTVFPMELAVGEVSAGDRPMFTGFIRDLTASRKIEQELRQAQKM--- 295

Query: 329 CPIPFFVYSHGNLFYANPSFLLLTK-YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
                   + G     N    ++    + ++          L+   + +  +  +     
Sbjct: 296 --EAVGQLTGGIAHDFNNLLTVILGNLEMLEAQIREPRQLELVKEARETAEHGAQLTERL 353

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
            +         RL  +       L     P  +         +  ++ +    R++  ++
Sbjct: 354 LAFGRRQPLRPRLTDV-----GQLFADLTPILRRTLGETIQVKARLDADLWKVRVDASQL 408

Query: 448 EIEVMQLC-SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
           +  ++ L  +  +A  +G       G +       ++      E   + P          
Sbjct: 409 QNAILNLAINARDAMPNG-------GRLTL----AAENTHIDAEYARQHPEVRIGRYVQI 457

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT 557
           +V +        +  R      T         L L ++      S  +   
Sbjct: 458 AVTDTGSGMTREVQERAFEPFFTTKEVGTGSGLGLSMVYGFAKQSGGHVAL 508


>gi|220905808|ref|YP_002481119.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Cyanothece sp. PCC 7425]
 gi|219862419|gb|ACL42758.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Cyanothece sp. PCC 7425]
          Length = 1081

 Score =  307 bits (787), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 87/607 (14%), Positives = 213/607 (35%), Gaps = 56/607 (9%)

Query: 231 PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG 290
            P   M +K   L+  +    + +    +      ES +  +  F+  + +       + 
Sbjct: 361 TPEELMADKNLWLSRLFPEDRERILEPLFTAF-FTESKIEVEYRFYHKDGSLRWVSSSYA 419

Query: 291 TLQNNSK---ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANP 346
           + Q        +       +         + E          PI     S  G+  Y N 
Sbjct: 420 SCQVELDCWIVTAVNQDITDRKQAEMALRDSEERFRTLSATAPIGICQTSGDGDCLYTNT 479

Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
            +  ++     + +  +G L  +  A + +  +A    +    DR           +   
Sbjct: 480 YWQEMSGLSFAESL-GSGWLQAIHPADRDALFHAWDAYVRGECDRLPD------FRLLTP 532

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
           + +   ++       +   E +   G + +  + ++ + K+  +     ++L+   D I 
Sbjct: 533 KGDIRWVSARVAAIKSASGEVLGYVGTDEDITERKLAEEKIREQ----AALLDIVPDAIY 588

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
           + +    I+  N+   +L+G+   + + +P    L  ++       +  +L        +
Sbjct: 589 VCDLSKRIIYWNQGAERLYGWTAAEAIGQPAHELLR-SSQLSAEAIMPRLLEGGE---FQ 644

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKES 582
                 +K  + + +      +   +           DI+E K+ + +   A+++     
Sbjct: 645 DEVCKLSKTGQEVIVAARWALVRNEAGQPKAILAVNTDITEKKKLEAQFLRAQRL----- 699

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
                    ++H++   LT I+  +++++ Q      + +  E    ++ +     D++ 
Sbjct: 700 ESIGTLAGGLAHDLNNMLTPILISAQLLQKQ----FPDEKKQELLKILESNARRGADLIR 755

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702
            +L  ++     + L      L + V      +      K I I    A ++  + AD  
Sbjct: 756 QILTFARGSDTTLLLLQLQELLKDVVQICQHTL-----PKSITISLEVAADLAMVFADPT 810

Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTT--------------HTSNEEVILRVRDTGVGM 748
            + Q+ +N+  NA    P GGQ+ +                        ++ V DTG+GM
Sbjct: 811 QLHQVLMNLCVNARDAMPEGGQLRLQAENFYADETYRQMNPEAQVGAYAVITVADTGMGM 870

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           T+  L++   PF     S +  G+GTGLG+ + + ++ ++ G   + S   +GT  ++  
Sbjct: 871 TSEVLDRIFDPFF----STKGVGQGTGLGMSVVQGIIRSHGGFIAVKSYLGQGTQFQVYL 926

Query: 809 PLYDTSH 815
           P    + 
Sbjct: 927 PAIKATE 933



 Score =  106 bits (265), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/317 (11%), Positives = 81/317 (25%), Gaps = 19/317 (5%)

Query: 275 FHTINLNQYTKKQYFGTLQNNSKESFEYLSHR----NHPSLSAYFDEGENLTPETVDKC- 329
            H     +  +      LQ  + +    L                 + +    + +D   
Sbjct: 272 AHHCASPRQWEPLEVELLQALADQIGIALQQAELYQQVQQELVERRQTQRKLNQVLDSAI 331

Query: 330 ----PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG-GLSTLLDAPKLSDNNAIKPV 384
                  F+        Y +     L  Y   + +      LS L    +      +   
Sbjct: 332 AFISSFRFWKNRDWAYEYYSKGCEALWGYTPEELMADKNLWLSRLFPEDRERILEPLFTA 391

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
                  T             +    L      +       +      +  +  D +  +
Sbjct: 392 FF-----TESKIEVEYRFYHKDGS--LRWVSSSYASCQVELDCWIVTAVNQDITDRKQAE 444

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
             +     +  ++      GI   + +G  L TN    ++ G    + L   +   +   
Sbjct: 445 MALRDSEERFRTLSATAPIGICQTSGDGDCLYTNTYWQEMSGLSFAESLGSGWLQAIHPA 504

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDIS 562
               + H     +  +  +  +   L    + + +S R+   K        Y  T  DI+
Sbjct: 505 DRDALFHAWDAYVRGECDRLPDFRLLTPKGDIRWVSARVAAIKSASGEVLGYVGTDEDIT 564

Query: 563 EWKQEKNKLSHAKKIAE 579
           E K  + K+     + +
Sbjct: 565 ERKLAEEKIREQAALLD 581



 Score = 45.8 bits (107), Expect = 0.034,   Method: Composition-based stats.
 Identities = 12/116 (10%), Positives = 30/116 (25%), Gaps = 5/116 (4%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D    +   ++   +  G  A + IG    ++     +     +  LL+    +  +   
Sbjct: 591 DLSKRIIYWNQGAERLYGWTAAEAIGQPAHELLRSSQLSAEAIMPRLLEGGE-FQDEVCK 649

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
               G    V +      + +   +        +           A   R  +  S
Sbjct: 650 LSKTG--QEVIVAARWALVRNEAGQPKAI--LAVNTDITEKKKLEAQFLRAQRLES 701


>gi|167464856|ref|ZP_02329945.1| two-component sensor histidine kinase [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 508

 Score =  307 bits (787), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 86/403 (21%), Positives = 165/403 (40%), Gaps = 28/403 (6%)

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
                 NQ    +    +     +    +++ E    +  S+ E   D I   +R G   
Sbjct: 129 HALLAQNQNDPFLRSYAVIYALYERNRAEKRWEESEQKYKSLFEHNPDAICSFDRAGRFT 188

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
             N A  ++ GY  +++L       +E           T  L                KE
Sbjct: 189 KVNPAAERITGYSADELLDMSIEDLIEPAELEKWTKQFTLSLEGITSTD---EVTFRNKE 245

Query: 536 EKLLSLRIIIKKLPFS---SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
            ++  L ++   +             +D++E K+ +  L  ++K++           A V
Sbjct: 246 GQIRILSVVYVPIIIEQVIRGVYWIANDVTERKRAEELLIKSEKLSVV-----GQLAAGV 300

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           +HEIR PLT++ GF ++++ +  G      Y  Y + +      +  IV++ L  +K + 
Sbjct: 301 AHEIRNPLTSLKGFVQLLQEKIDG------YDTYLDIMVSELERINFIVSEFLVFAKPQ- 353

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712
               +HF+P  L + +   ++L+   A    + I+      +P +  D   +KQ+ +N+L
Sbjct: 354 ---RVHFQPKDLHQMLKNTVALLNTKAIMSNVEIKDEIQELLPLVFCDENQIKQVFINVL 410

Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           +N+I   P GG I +        +V L   D GVG++   L +  +PF         + +
Sbjct: 411 NNSIEAMPEGGTIRLGGNCKD-GQVTLSFSDEGVGISENRLTRIGEPFYTT------KEK 463

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
           GTGLGL  +  +++ + G+  I S   KGT++ + FP+    H
Sbjct: 464 GTGLGLMASYKIMENHKGQIKITSEVNKGTIVHLRFPVLSGQH 506



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/114 (14%), Positives = 36/114 (31%), Gaps = 5/114 (4%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D  G   +++    +  G  A +++ M + D+ +   ++       L     T   + T 
Sbjct: 182 DRAGRFTKVNPAAERITGYSADELLDMSIEDLIEPAELEKWTKQFTLSLEGITSTDEVTF 241

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
              EG    + +    +PI        G     I +          L  + +K 
Sbjct: 242 RNKEGQIRILSVV--YVPIIIEQ-VIRGVYW--IANDVTERKRAEELLIKSEKL 290



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/172 (9%), Positives = 52/172 (30%), Gaps = 12/172 (6%)

Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKY 354
            +      +          ++E E       +  P     +   G     NP+   +T Y
Sbjct: 141 LRSYAVIYALYERNRAEKRWEESEQKYKSLFEHNPDAICSFDRAGRFTKVNPAAERITGY 200

Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
            + + ++    +  L++  +L        + L   +             +        ++
Sbjct: 201 SADELLD--MSIEDLIEPAELEKWTKQFTLSL---EGITSTDEVTF---RNKEGQIRILS 252

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
            +      +         I  +  + +  + ++ I+  +L S++   + G+A
Sbjct: 253 VVYVPIIIEQV-IRGVYWIANDVTERKRAE-ELLIKSEKL-SVVGQLAAGVA 301


>gi|42524989|ref|NP_970369.1| two-component hybrid sensor and regulator [Bdellovibrio
           bacteriovorus HD100]
 gi|39577200|emb|CAE81023.1| two-component hybrid sensor and regulator [Bdellovibrio
           bacteriovorus HD100]
          Length = 377

 Score =  307 bits (787), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 77/367 (20%), Positives = 169/367 (46%), Gaps = 16/367 (4%)

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
               +  +I+E+   GI ++N+ G ++  N  + K+FGY   ++   P    +       
Sbjct: 7   EHENRFKTIIESLPTGIVMVNKSGFVVLCNGEMEKMFGYSPGELKGSPIERLVPMGARQH 66

Query: 509 MNHYLTEILS--LDLRQTLEKITLGSTKEEKLLSLRI--IIKKLPFSSCYSLTMHDISEW 564
              +    +      +    +   G  K+ K + + I      +  +S    ++ DI+E 
Sbjct: 67  HPQHREGFMQSPTKRQMGAGRDLSGLCKDGKEIPVEIGLNHIVIDNNSYAIASIVDITER 126

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           K  + +L HA    ++++     F+  VSH++++PL     F E IK             
Sbjct: 127 KIIETRLKHAYDELQQKNQEMEQFVYTVSHDLKSPLVTSSSFIEFIKED-IKSGNMEDVH 185

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           +  + ++++   + +++NDLL +S+  +G+M L+   VS+++ ++E +        ++ I
Sbjct: 186 DSIDRLEKAHKRMQELINDLLQLSR--AGRMELNLSDVSMNDIINEILENFSDRLKDRNI 243

Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHF--TPSGGQIIISTTHTSNEEVILRVR 742
            ++     ++P+++ D R + Q+  N+++NA+ +  +    QI I T     E + + V+
Sbjct: 244 EVQ--LPTDLPKVIGDRRRLYQVLENLVTNALKYGTSSPHPQIQILTKDAPTEML-VGVK 300

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G G+      K    F ++ NS     EGTG+GL + + ++  + G+ ++ S   +G 
Sbjct: 301 DNGPGIAPAYHRKIFGLFQRLDNS----QEGTGVGLAIVQRIMQLHGGRTWVESRENEGA 356

Query: 803 LIEIIFP 809
              + FP
Sbjct: 357 TFWLAFP 363



 Score = 42.3 bits (98), Expect = 0.32,   Method: Composition-based stats.
 Identities = 16/167 (9%), Positives = 42/167 (25%), Gaps = 14/167 (8%)

Query: 312 SAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDD----IEIAGGL 366
                E EN     ++  P     V   G +   N     +  Y   +     IE    +
Sbjct: 2   ETVAFEHENRFKTIIESLPTGIVMVNKSGFVVLCNGEMEKMFGYSPGELKGSPIERLVPM 61

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
                 P+  +     P                L  +  + +       +     +    
Sbjct: 62  GARQHHPQHREGFMQSPTKRQMGAGR------DLSGLCKDGKEIPVEIGLNHIVID---N 112

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
           N        +  + +I + +++    +L    +     +  ++ +  
Sbjct: 113 NSYAIASIVDITERKIIETRLKHAYDELQQKNQEMEQFVYTVSHDLK 159


>gi|289675169|ref|ZP_06496059.1| PAS [Pseudomonas syringae pv. syringae FF5]
          Length = 500

 Score =  307 bits (787), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 90/368 (24%), Positives = 160/368 (43%), Gaps = 9/368 (2%)

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT--VFLEQNTPSVMNHYL 513
           ++ +   + I + + +G ++S NR+  +  G   E +  +  T    + +     M+   
Sbjct: 55  ALFDGIPNPIYVRDLKGRLISCNRSYEQSLGISFEQMNGRRLTDVNLIPRALAEQMHTDY 114

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISEWKQEKNKLS 572
             +L        ++      K   +    +                 DI+E KQ + +L 
Sbjct: 115 LTLLENHQPVFSDRTIELPGKRMDVWQWTVPFFAADGQLQGLLGGWIDITERKQLEQQLQ 174

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
            A ++A++ +  KS FLA +SHEIRTP+ AIIG  E+   Q       P          R
Sbjct: 175 EAMRLADQANEAKSAFLASMSHEIRTPMGAIIGLLELECEQALRLGKIPSQG--LQVAHR 232

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
           S   ++ ++ + LD+++IE+G M L     SL       I L    A EK + +R  F+ 
Sbjct: 233 SATELIALIGESLDLARIEAGGMQLSLAVTSLQGLFDGVIELFSAQAGEKGVELRLEFSG 292

Query: 693 NI-PRILADLRSVKQIALNILSNAIHFTPSGGQII---ISTTHTSNEEVILRVRDTGVGM 748
                   D   ++Q+  N+L NA+ FT  G  ++   ++     +  V + ++D+G G+
Sbjct: 293 QARGDYWLDPFRLRQVLHNVLGNALKFTRQGAVVVTLDVTHDSPESTRVRIGIQDSGEGI 352

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
                ++  +PF Q  +       G+GLGL + + +V+   G   + S P KGTL+ I  
Sbjct: 353 DPQRQQQVFQPFTQASDDTAAHYGGSGLGLSITRQLVELMKGDISLHSEPGKGTLVTIDL 412

Query: 809 PLYDTSHP 816
           PL   S P
Sbjct: 413 PLTRVSEP 420



 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 39/264 (14%), Positives = 71/264 (26%), Gaps = 20/264 (7%)

Query: 68  LDSENTFV---FDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI 124
           L+ +  F    FD IP      +  D  G L   +    +++G    +M G RL DV+ I
Sbjct: 46  LNDQLAFKHALFDGIPNP---IYVRDLKGRLISCNRSYEQSLGISFEQMNGRRLTDVNLI 102

Query: 125 LHIDPN---NHIGDLLKRQNT-WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRG 180
                         LL+     +  +T   P +  +++       +P ++ + +  G  G
Sbjct: 103 PRALAEQMHTDYLTLLENHQPVFSDRTIELPGKRMDVWQWT----VPFFAADGQLQGLLG 158

Query: 181 FGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV 240
             I              +   +     +E K    +    +                 + 
Sbjct: 159 GWI--DITERKQLEQQLQEAMRLADQANEAKSAFLASMSHEIRTPMGAIIGLLELECEQA 216

Query: 241 SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF 300
             L +  +    V       L+     SL    D   I            +LQ       
Sbjct: 217 LRLGKIPSQGLQVAHRSATELIALIGESL----DLARIEAGGMQLSLAVTSLQGLFDGVI 272

Query: 301 EYLSHRNHPSLSAYFDEGENLTPE 324
           E  S +          E       
Sbjct: 273 ELFSAQAGEKGVELRLEFSGQARG 296



 Score = 43.5 bits (101), Expect = 0.17,   Method: Composition-based stats.
 Identities = 18/143 (12%), Positives = 45/143 (31%), Gaps = 11/143 (7%)

Query: 323 PETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
               D  P P +V    G L   N S+       S + +         L    L++    
Sbjct: 54  HALFDGIPNPIYVRDLKGRLISCNRSYEQSLGI-SFEQMNGRRLTDVNLIPRALAEQMHT 112

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
             + L  + +   +      TI+   +  + +            +     G   +  + +
Sbjct: 113 DYLTLLENHQPVFS----DRTIELPGKR-MDVWQWTVPFFAADGQLQGLLGGWIDITERK 167

Query: 442 INKRKMEIEVMQLCSILEATSDG 464
             +++++ E M+L    +  ++ 
Sbjct: 168 QLEQQLQ-EAMRLA---DQANEA 186


>gi|224538200|ref|ZP_03678739.1| hypothetical protein BACCELL_03091 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520195|gb|EEF89300.1| hypothetical protein BACCELL_03091 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 928

 Score =  307 bits (787), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 94/523 (17%), Positives = 198/523 (37%), Gaps = 32/523 (6%)

Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSVDDI 360
           Y+            D  E L        P+   +Y+   +    N   + +   K     
Sbjct: 423 YMDVTEMRRTYMALDHSEKLLRNLFSNIPVGVEIYNKDGILIDLNNKDMEIFGVKDKSST 482

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSD-RTCIAASARLHTIQWNRENSLAMTFIPFE 419
                     + P +  +   +  +    D       S      +  +   + +     +
Sbjct: 483 IGVN----FYENPNVPSDIRERVKVEDELDFSQDYEFSNVSDYYESEKRGGIELYTKISK 538

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
             ++  +N     I  ++ +   +  ++         I E    G      +  +L+ N 
Sbjct: 539 IYDKQGDNNGFVLINIDNTERISSINRIRDFENFFLLISEYAKVGY----AKLNLLTRNG 594

Query: 480 AVSKLFGYPVEDILRKP------FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
              K +   + +    P          +       +  +  +    +      ++ +  +
Sbjct: 595 YAIKQWYKNMGEDEDTPLVEVVGIYNKMHPQDRVRVLAFFEKAKRGEATSFKSEMRVLKS 654

Query: 534 K---EEKLLSLRIIIKKLPFSSCYS---LTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
               +   + + +++ +    +         +DI+E K+ + KL  AK+ AE+    KS 
Sbjct: 655 GTLDQWNWVRMNVVLNRYDPENGLIELIGVNYDITELKETEQKLIEAKEKAEEADRLKSA 714

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           FLA +SHEIRTPL AI+GFS ++              EY+  ++ +  L+L +++D+LD+
Sbjct: 715 FLANMSHEIRTPLNAIVGFSSLLVETE----DQGEKREYSKMVEENNELLLQLISDILDL 770

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707
           SKIE+G  +     + ++    +    ++L      + +          I++D   + Q+
Sbjct: 771 SKIEAGTFDFKIRDLDVNTLCGDVQRSMKLRVKP-GVELLFEPTLPSCVIVSDPNRLHQV 829

Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
             N ++NAI FT +G  I I       + + + V DTG+G+     EK    F ++ +  
Sbjct: 830 VANFVNNAIKFTTTG-YIRIGYDQPDAKHLRIYVSDTGIGIAPEACEKIFDRFIKLNSF- 887

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
               +GTGLGL ++K++++   G   + S   KG+    I P+
Sbjct: 888 ---VQGTGLGLSISKSIIEQLGGTIGVDSELGKGSTFWFILPV 927


>gi|163757825|ref|ZP_02164914.1| putative sensor histidine kinase transmembrane protein [Hoeflea
           phototrophica DFL-43]
 gi|162285327|gb|EDQ35609.1| putative sensor histidine kinase transmembrane protein [Hoeflea
           phototrophica DFL-43]
          Length = 788

 Score =  307 bits (787), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 108/475 (22%), Positives = 190/475 (40%), Gaps = 27/475 (5%)

Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY-RSDRTCIAASARLHTIQ 404
            S     +  + + +    G   L          A+        +    +A  + +  + 
Sbjct: 43  ASHDETLRDSAPNALAGLSGALPLFLISGALGAAALSVAFDTPAALLASVAGISVVAAMP 102

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
             +  +   +            NM  +    +         ++      L ++ +  SD 
Sbjct: 103 LLKRPADPSSAADKPGRKPIKANMTPDPDRSKAEHDSDRTWELGEFTSHLTTLFDGLSDM 162

Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
           IA  + EG I+  N           E+ +                      +       T
Sbjct: 163 IAACDLEGRIIFANETFR--LAIGTENPVGLTLAQ--------------AGVAPTQTDGT 206

Query: 525 LEKITLGSTKEEKLLS-LRIIIKKLPFSSCYSL--TMHDISEWKQEKNKLSHAKKIAEKE 581
            ++  +    E + +   R  I + P S    +     +++  ++ + +L  A + AE  
Sbjct: 207 GQRELVLGEGEAQSVWTWRETIARDPVSGKMFVHCVGRNVTATRKAEAELVEALERAEAA 266

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
           S  K+ FLA VSHEIRTPL  I+G + ++          P    Y      SG  +L ++
Sbjct: 267 SHAKTRFLATVSHEIRTPLNGILGMTHLLSQTE----TTPEQASYIRNARESGQSLLSLI 322

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILAD 700
            DLLD++ IE+G++NL  E   L E V     L+   A+EK I I    A + P+ I +D
Sbjct: 323 EDLLDVTSIEAGRLNLREEEGDLSELVHGVCELMASKAHEKNIEIAVHIAVDAPQRIASD 382

Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760
           +  V+QI  N++ NAI FT SGG +++  +   N  ++  V DTG G+   +  K  + F
Sbjct: 383 IGRVRQILFNLVGNAIKFTESGG-VLVEVSLE-NAALVFSVTDTGPGLKETDKAKIFEEF 440

Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            +  N    +  G GLGL ++  +V+A  G+  + STP KG+      P+ D S+
Sbjct: 441 ERADNGPTRKHGGAGLGLSISARIVEALGGEIGVDSTPGKGSKFHFSVPIADISN 495


>gi|66811194|ref|XP_639305.1| histidine kinase [Dictyostelium discoideum AX4]
 gi|74854804|sp|Q54RP6|DHKL_DICDI RecName: Full=Hybrid signal transduction histidine kinase L
 gi|60467894|gb|EAL65907.1| histidine kinase [Dictyostelium discoideum AX4]
          Length = 1709

 Score =  307 bits (787), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 86/375 (22%), Positives = 162/375 (43%), Gaps = 23/375 (6%)

Query: 444  KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
               ++    ++ + +E + D + I +  G I   N A S++ G+   ++L K F+  +  
Sbjct: 694  AESLKDATRKMVTCIENSPDCVEIWDPSGHIQYLNLAFSEMTGFARWELLGKEFSNLI-- 751

Query: 504  NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM----H 559
               + +   +   L+     T             L+     I  +       L       
Sbjct: 752  -DNTEIIPNMWATLTDKK--TWNGFIRTRHNNNTLIYFEASISPVLDQFQQILYYNCTKR 808

Query: 560  DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
            D+++ + ++   +  +    ++S  +   L+ +SH+IRTP++ IIG ++++ +       
Sbjct: 809  DVTQKRIDEESKTLEQNKIIEKSRLR---LSMMSHDIRTPMSNIIGMADLLLDTSL---- 861

Query: 620  NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
            +     Y   I  S N +L I+ND+LDISKIE+GK+++ +E    +  VS+ +  +    
Sbjct: 862  SQHQHHYLEIIKNSSNTLLTIINDILDISKIEAGKLDIDYESFDFNATVSQVVESMAQRV 921

Query: 680  NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE--- 735
              K + + +     IP IL      + QI  N+L N++ FT  G +I I           
Sbjct: 922  QSKGLELLSYVDPKIPNILIGPSSRLNQILTNLLGNSLKFTDKG-EISICCLLNDETDSE 980

Query: 736  -EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA-NMGKFY 793
             E+ + VRDTG+G+    L    K F Q   +   +  G+GLGL + K +V     G+  
Sbjct: 981  YEIKVDVRDTGIGIKKEALPLLFKAFTQAEGTITRQYGGSGLGLAICKELVHLAFNGEIS 1040

Query: 794  IFSTPAKGTLIEIIF 808
            + S    G+    I 
Sbjct: 1041 VESQYGHGSTFTCIL 1055



 Score = 48.5 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/133 (13%), Positives = 43/133 (32%), Gaps = 8/133 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            W  D  G+++ ++    +  G   ++++G    ++ D   I PN  +   L  + TW G
Sbjct: 717 IW--DPSGHIQYLNLAFSEMTGFARWELLGKEFSNLIDNTEIIPN--MWATLTDKKTWNG 772

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
                    T +Y   + +  P+  + ++   +                        K  
Sbjct: 773 FIRTRHNNNTLIYF--EASISPVLDQFQQILYYN--CTKRDVTQKRIDEESKTLEQNKII 828

Query: 206 HLHEIKKGHSSVE 218
               ++    S +
Sbjct: 829 EKSRLRLSMMSHD 841


>gi|332995263|gb|AEF05318.1| GAF sensor hybrid histidine kinase [Alteromonas sp. SN2]
          Length = 695

 Score =  307 bits (787), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 103/389 (26%), Positives = 166/389 (42%), Gaps = 17/389 (4%)

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
            +   E    +    K  +E +   L  I E    G   ++ E   L  + ++ ++    
Sbjct: 151 AEVAREQALSEIISQKNALEEQNALLNQITELAGVGTWELDVETGALKWSASLKRMLQMS 210

Query: 489 VEDILRKPFTVFLEQN--TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
            +  +     +    N    +V    + EI         E   +    E++   L     
Sbjct: 211 EKQDITPSHALNFIANKKVRNVYESKMEEIAINGNDWAYEFEVITDGGEKR--WLESRAH 268

Query: 547 KLPFSSCYSLTM---HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
            +  +      +    DI+E       L     IAE+    +S+FLA +SHEIRTP+  +
Sbjct: 269 PIMKNGTCLKIIGATRDITERFNTTQSLKQKTAIAEQALKARSEFLANMSHEIRTPIHGV 328

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
            G  E + +       N +  EY +   RS   +L+IVND+LD SKI+SG M    EPV+
Sbjct: 329 QGMLETLCSTSL----NEKQKEYTHVAMRSAESLLNIVNDILDFSKIDSGHMTYDVEPVN 384

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSG 722
             E + + I + +  A++K I   T  A  +    LAD   + QI +N+++NA+ FT  G
Sbjct: 385 FKELIEQQIPMFRRLADKKGIEFITETAAVSDTLFLADSLRLSQILMNLMNNAVKFTDKG 444

Query: 723 GQIIISTTHTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
             I IST  T        V L V DTG+G+++ + +    PF Q   S Q R  GTGLGL
Sbjct: 445 S-IKISTRCTKYGAGRFRVKLIVTDTGIGISDEQQKVIFSPFLQAEESTQRRFGGTGLGL 503

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEII 807
            +   +V+   G   + S   +G    + 
Sbjct: 504 AIVNNIVEHYDGNVEVSSAIGEGARFIVT 532


>gi|303326050|ref|ZP_07356493.1| sensory box sensor histidine kinase/response regulator [Desulfovibrio
            sp. 3_1_syn3]
 gi|302863966|gb|EFL86897.1| sensory box sensor histidine kinase/response regulator [Desulfovibrio
            sp. 3_1_syn3]
          Length = 1411

 Score =  307 bits (787), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 129/766 (16%), Positives = 254/766 (33%), Gaps = 61/766 (7%)

Query: 91   AHGYLK--EISEELPKTIGNYAF---KMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWY 144
            A G +    IS+      G        + G           +D     I   ++      
Sbjct: 509  ADGAIVPEFISDGFAAMTGMTLEQAYALYGSDAGAGVHPEDVDYILTRIRRQVETG-LDS 567

Query: 145  GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
             +T     +G   Y+ +   +  I   +     +  F  V    ++       +  D   
Sbjct: 568  CETVYRLRKGEQGYIWVKNISALIPDEDGNARIYAVFSDVTE-DMNERAELRSRYNDMLI 626

Query: 205  SH-----------------LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247
             H                  + I +          + F     P    +   V    E+ 
Sbjct: 627  EHHKGFVHGEIITGHCNITRNFIIEITDQTNSRLLETFGTAREPFFTGLAGLVVDENEHR 686

Query: 248  AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYF---GTLQNNSKESFEYLS 304
            A  +  L                E E F  +   +  +         +  +S +    LS
Sbjct: 687  AFLETFLAPPLQAAF-ERGDLKHELECFVKLPTEEQGRYVRIVVKLVVSPDSGDLIGVLS 745

Query: 305  HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364
              +             L+  + D             +   N     L   +     + A 
Sbjct: 746  VLDVTEQKISEQILNRLSHASYDFLADVDLRRDRYKVLSFNHQASALPPSEGGYTAQAAY 805

Query: 365  GLSTLLDAPKLSDNNAIKPV-MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
               +L+          +  +  + R      + S        N E    +        + 
Sbjct: 806  LFQSLVVPKDKEICARMLDLDYMRRRLEEEGSYSFHYSLTDENGE----ILTKNMVVFSI 861

Query: 424  FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
              +         +  ++   ++ +   +  L    +    G   +   G ++ T   V +
Sbjct: 862  DKKLGRVCLSRTDITESVREQKAL---LNMLAYTFDLA--GFLNLATGGFVIHTRETVLR 916

Query: 484  LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS--------LDLRQTLEKITLGSTKE 535
                   +        F+           +   LS         +  +  E      ++ 
Sbjct: 917  NLAPYTTEDFDLALEKFIRHADTEEGQDEIRGQLSVEAMLARLAEQPEGYEFSFPCRSET 976

Query: 536  E-KLLSLRIIIKKLPFSSCYSLTMHDISEW----KQEKNKLSHAKKIAEKESSHKSDFLA 590
              +   + ++           L   D+++     +Q + +L +A  +A + S  K+DFL+
Sbjct: 977  GLRHKQISVLWG-GENHQTICLVRADVTDVLRADQQTREQLKNALTLAREASQAKTDFLS 1035

Query: 591  RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650
             +SH+IRTP+ AI+G +E+   +R  P+   +  E  + I  +   +L ++ND+LD+S+I
Sbjct: 1036 SMSHDIRTPMNAIVGMTELALARRDNPV---QIDESLSVIRTASEHLLRLINDILDMSRI 1092

Query: 651  ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710
            ESG + L  E  S  E V + ++     A +K      SF     + + D+  + QI  N
Sbjct: 1093 ESGHIVLVKELFSQREEVEKIVTRALALAGKKGQTFSHSFQVRHDKCIGDVLRIHQILEN 1152

Query: 711  ILSNAIHFTPSGGQIIISTTH-----TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
            ++SNA+ FTP GG++ ++ T               V DTG+G++  ++    + F ++ N
Sbjct: 1153 LISNAVKFTPEGGRVSLAVTELPQKNEQIGWYRFVVADTGIGISPEDIPHIFEVFFRVEN 1212

Query: 766  SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
             +    EGTGLGL + K +VD   G   + S P +GT   +  PL+
Sbjct: 1213 LRVGHTEGTGLGLSIIKNIVDYKGGTIKVESEPGQGTRFTVDLPLH 1258



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 45/515 (8%), Positives = 112/515 (21%), Gaps = 45/515 (8%)

Query: 86  TWNIDAH-GYLKEISEELPKTIGNYAFKMIGMRLCDV----SDILHIDPNNHIGDLLKRQ 140
            +  D         +      +G    + I     +          ++      +     
Sbjct: 10  VYRFDGEKLSPVFHNPAFYNLLGYS-DEHIARTQRETDYLNVHPEDVEALKASIEAAIAD 68

Query: 141 NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
                 T     +G   Y+ + L        +  F  +   G+       +   +     
Sbjct: 69  EGVARHTYRVFNDGKKEYIWVQLELAARRQADGTFLLY---GVYTDITERHQLESRLAEA 125

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
            +K   +     G  ++ K      +         +           A  D    T    
Sbjct: 126 HEKTQDIINAIPGGVAIYKVSDIFETVYFSDGVPELSGHTVREYHELAKGDAAEMTYPED 185

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL-----SAYF 315
                             +     K +    +  + +                    +  
Sbjct: 186 TAMVVGKLRHALAHNEVADFEFRKKHKGGHVVWVHIQAKKVGEEDGFPLLQCVFHNISAL 245

Query: 316 DEGENLTPETVDKCPIPFFVYS-HGNL--FYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
            + +      V+  P    VY+   ++   + +     L+ Y   ++ +   G       
Sbjct: 246 KKTQQEMEHLVNSIPGGIAVYTVTDSITPVFCSEGVAALSGYT-KEEYQALRGNDAFQVV 304

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
            +         V+                T+  +    + +                   
Sbjct: 305 YEEDRERVRAAVLRAVRSGE--PVEISYRTLHKDG-RLVWLHLNGRRMDALTGPTTFYAV 361

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI-ILSTNRAVSKLFGYPVED 491
                 +T++             S+    +DGI +I RE   +L  N     LF      
Sbjct: 362 FTGMSAETKL-----------YQSLANEAADGIYVIGREDYSLLYVNER-VNLFMGGEAL 409

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
           +  +     L           L        RQ +               +     +    
Sbjct: 410 VSGRKCYAVLHGRRKPCEFCNLDRRNDGRKRQDMVIPGSDR--------IYATATRETDW 461

Query: 552 SC---YSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
           +    Y   + DI+E  + + +    ++  +    
Sbjct: 462 NGIPAYVRYVTDITEKVRTREEKERLERYYQTLIR 496



 Score = 83.5 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/260 (12%), Positives = 79/260 (30%), Gaps = 18/260 (6%)

Query: 326 VDKCPIPFFVYSHG----NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
           +D  P    VY       +  + NP+F  L  Y              L   P+  +    
Sbjct: 1   MDNMPGGLCVYRFDGEKLSPVFHNPAFYNLLGYSDEHIARTQRETDYLNVHPEDVEALKA 60

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
                   +      +   + +  + +       +      Q        G+  +  +  
Sbjct: 61  SIEAAIADEG----VARHTYRVFNDGKKEYIWVQLELAARRQADGTFLLYGVYTDITERH 116

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGII--LSTNRAVSKLFGYP---VEDILRKP 496
             + ++     +   I+ A   G+AI     I   +  +  V +L G+      ++ +  
Sbjct: 117 QLESRLAEAHEKTQDIINAIPGGVAIYKVSDIFETVYFSDGVPELSGHTVREYHELAKGD 176

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY-- 554
                     +++   L   L+ +  +  +       K   ++ + I  KK+     +  
Sbjct: 177 AAEMTYPEDTAMVVGKLRHALAHN--EVADFEFRKKHKGGHVVWVHIQAKKVGEEDGFPL 234

Query: 555 -SLTMHDISEWKQEKNKLSH 573
                H+IS  K+ + ++ H
Sbjct: 235 LQCVFHNISALKKTQQEMEH 254



 Score = 48.9 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/136 (11%), Positives = 47/136 (34%), Gaps = 10/136 (7%)

Query: 458 LEATSDGIAIINREGI---ILSTNRAVSKLFGYPVEDI---LRKPFTVFLEQNTPSVMNH 511
           ++    G+ +   +G     +  N A   L GY  E I    R+   + +       +  
Sbjct: 1   MDNMPGGLCVYRFDGEKLSPVFHNPAFYNLLGYSDEHIARTQRETDYLNVHPEDVEALKA 60

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS---LTMHDISEWKQEK 568
            +   ++ +              +++ + +++ +     +           DI+E  Q +
Sbjct: 61  SIEAAIADEGVARHTYRVFN-DGKKEYIWVQLELAARRQADGTFLLYGVYTDITERHQLE 119

Query: 569 NKLSHAKKIAEKESSH 584
           ++L+ A +  +   + 
Sbjct: 120 SRLAEAHEKTQDIINA 135


>gi|158521942|ref|YP_001529812.1| PAS/PAC sensor signal transduction histidine kinase [Desulfococcus
           oleovorans Hxd3]
 gi|158510768|gb|ABW67735.1| PAS/PAC sensor signal transduction histidine kinase [Desulfococcus
           oleovorans Hxd3]
          Length = 591

 Score =  307 bits (787), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 73/413 (17%), Positives = 163/413 (39%), Gaps = 23/413 (5%)

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK-RKMEIEVMQLCSIL 458
           +  ++                     E         +      ++ +    +  +L ++ 
Sbjct: 196 IREMEQGARRFAGGDLSSKLVLPASAELASLAEAMNDMAGRLDDRIKTAIRQKNELNAVF 255

Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
            + ++ +  I     IL  N A         + +        +  +         + + +
Sbjct: 256 SSMTEAVIAIGSNEKILRVNHAAETFLRKSRQALNGTFLYEVIRNHDFKKFVE--SAVKT 313

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578
                 L     G T     +    ++ +        L ++D++  +Q +          
Sbjct: 314 DRSEADLPFELDGKTH-IINIHASALVDETGERMGALLILNDVTRMRQLET--------- 363

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
                 + DF A VSHE++TPLT+I GF+E +  +    L N   +     I  +   + 
Sbjct: 364 -----MRKDFAANVSHELKTPLTSIQGFTETLLAEP-SLLDNAHVVRCLEIIANNTKRLT 417

Query: 639 DIVNDLLDISKIES--GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696
            I++DLL +S+IE    + + +F+   L + ++ A ++ +   + K+I + +    ++  
Sbjct: 418 TIIDDLLKLSEIEHADRQKDFNFQEAPLADVINSAAAICRPDLDSKQIKLESDCPADL-A 476

Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKA 756
           +  D   ++   +N++ NA+ ++P+  ++ IS       EV + V D G G+    + + 
Sbjct: 477 LPIDPFLLELALVNLVENAVKYSPNNSEVGISAE-DKGREVHVSVIDHGTGIAEAHIPRI 535

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            + F ++  ++     GTGLGL + K +   + G+  + STP KG+   +IFP
Sbjct: 536 FERFYRVDKARSRELGGTGLGLAIVKHVAQIHGGRIEVQSTPGKGSAFTLIFP 588


>gi|146337386|ref|YP_001202434.1| sensor histidine kinase [Bradyrhizobium sp. ORS278]
 gi|146190192|emb|CAL74184.1| Putative Sensor histidine kinase with PAS and Response regulator
           receiver domains [Bradyrhizobium sp. ORS278]
          Length = 754

 Score =  307 bits (787), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 96/368 (26%), Positives = 166/368 (45%), Gaps = 16/368 (4%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           +++    +  ++ E   D I +  ++G I+  N A  ++ G   E+++   F   L +  
Sbjct: 102 ELQEAEQRARNLFEQQGDLIVMREQDGTIVFVNDAYCQMAGLDRENLVGSKFAFALIEQG 161

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL--TMHDISE 563
            S +    T +    +   +           + ++ R  + +        L     D+++
Sbjct: 162 DSALEPSGTRVHDQRIESAI---------GPRWIAWREALVRSDAGHPAVLQCVGRDVTD 212

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + +  L+ A+  A   +  KS FLA  SHEIRTPL  I+G   ++      P      
Sbjct: 213 RTETERALADARDQANAANRAKSRFLAMASHEIRTPLNGILGMGGLLLETPLTP----EQ 268

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
             YA  +  SG  ++ ++N+LLD SKIE+GK+ L  +P SL   + E   L+   A  K+
Sbjct: 269 TTYAKAVRASGEALMSLINELLDYSKIEAGKLALEAQPFSLAALIEEITELLAPRAQAKQ 328

Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           + I       +P  +  D   ++Q+ LN+  NAI FT  GG  +I+       E+  +VR
Sbjct: 329 LEIAAYMDERLPTWVTGDAARLRQVLLNLAGNAIKFTAKGGVAVIAEPGIWPNEISFQVR 388

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG+G+     E+  + F Q  +S      GTGLGL ++  +V    G+  + S P  G 
Sbjct: 389 DTGIGIAAEAQERIFREFEQADDSVARSFGGTGLGLAISDRIVKRMGGRISLQSEPGAGA 448

Query: 803 LIEIIFPL 810
             E+  PL
Sbjct: 449 TFEVCVPL 456



 Score = 42.7 bits (99), Expect = 0.23,   Method: Composition-based stats.
 Identities = 21/233 (9%), Positives = 58/233 (24%), Gaps = 20/233 (8%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLC-DVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150
            G +  +++   +  G     ++G +    + +             L+   T      + 
Sbjct: 127 DGTIVFVNDAYCQMAGLDRENLVGSKFAFALIEQGD--------SALEPSGTRVHDQRIE 178

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
              G       +     + S     +  +  G         +          + +  +  
Sbjct: 179 SAIGPRWIAWRE---ALVRSDAGHPAVLQCVG--RDVTDRTETERALADARDQANAANRA 233

Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270
           K    ++   +              +    + LT         ++     L++     + 
Sbjct: 234 KSRFLAMASHEIRTPLNGILGMGGLLLE--TPLTPEQTTYAKAVRASGEALMS----LIN 287

Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
           E  D+  I   +   +    +L    +E  E L+ R            +   P
Sbjct: 288 ELLDYSKIEAGKLALEAQPFSLAALIEEITELLAPRAQAKQLEIAAYMDERLP 340



 Score = 38.1 bits (87), Expect = 5.8,   Method: Composition-based stats.
 Identities = 8/147 (5%), Positives = 36/147 (24%), Gaps = 3/147 (2%)

Query: 313 AYFDEGENLTPETVDKCPI-PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
               E E       ++           G + + N ++  +      + +      + +  
Sbjct: 101 WELQEAEQRARNLFEQQGDLIVMREQDGTIVFVNDAYCQMAGLDRENLVGSKFAFALIEQ 160

Query: 372 APKLSDNNAIKPVMLYRSDR-TCIAASARLHTIQWN-RENSLAMTFIPFEKANQFPENMP 429
                + +  +               + R   ++ +    ++              E   
Sbjct: 161 GDSALEPSGTRVHDQRIESAIGPRWIAWREALVRSDAGHPAVLQCVGRDVTDRTETERAL 220

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCS 456
            +  +  +   R   R + +   ++ +
Sbjct: 221 ADARDQANAANRAKSRFLAMASHEIRT 247


>gi|39937477|ref|NP_949753.1| sensor histidine kinase [Rhodopseudomonas palustris CGA009]
 gi|192293263|ref|YP_001993868.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           TIE-1]
 gi|39651336|emb|CAE29858.1| sensor histidine kinase with PAS/PAC and response regulator
           receiver domains [Rhodopseudomonas palustris CGA009]
 gi|192287012|gb|ACF03393.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           TIE-1]
          Length = 873

 Score =  307 bits (787), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 81/379 (21%), Positives = 157/379 (41%), Gaps = 24/379 (6%)

Query: 442 INKRKMEIEVMQLCSIL----EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
             K ++E +   +  +L       SD +   +  G ++       ++   P   ++  P 
Sbjct: 229 RAKFELERQTEIISLLLKDFQANASDWLWQTDAHGRLVHVPERFVEVAKLPPSLLIGAPL 288

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---- 553
              +    P      +     +  R+ +  + +            +  K +  ++     
Sbjct: 289 ADVIGMLCPEDGRCAMGVAAKMAQREPMNDLVVHVVIGGTPRLWSLTAKPMFDAAGEFAG 348

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
           Y     D++E  + +         AE E+  KS FLA +SHEIRTP+  ++G +  +   
Sbjct: 349 YRGVGRDVTERWRAEQ--------AEAENRAKSSFLAMMSHEIRTPMNGVLGLANSLLET 400

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
           +     +P   +    I  SG+ +L I+ND+LD+SK+E+G++       S    V    +
Sbjct: 401 KL----DPEQQQAVTTIRDSGDDLLRILNDILDLSKLEAGRLEFEQADFSPTTLVESVRA 456

Query: 674 LVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
           +++     K I ++      +P  +  D   ++Q+ LN+ +NA+ FT  G   I+ T   
Sbjct: 457 IIEPEVRGKGIELKVDIDPRLPPSLNGDAARIRQVLLNLAANAVKFTEQGSIAIVLTCVK 516

Query: 733 SNEE---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
            N+    V  +V DTG+G++   +      F Q   S   R  GTGLGL +++ +V+   
Sbjct: 517 RNDSHATVEWQVTDTGIGISPDRVGSLFTDFAQADVSINRRFGGTGLGLAISRRIVEQMG 576

Query: 790 GKFYIFSTPAKGTLIEIIF 808
           G   + S   +G+      
Sbjct: 577 GDIAVTSREGEGSTFRFSL 595



 Score = 74.7 bits (182), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 49/396 (12%), Positives = 107/396 (27%), Gaps = 21/396 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD---ILHIDPNNHIGDLLKRQNT 142
            W  DAHG L  + E   +        +IG  L DV              +   + ++  
Sbjct: 256 LWQTDAHGRLVHVPERFVEVAKLPPSLLIGAPLADVIGMLCPEDGRCAMGVAAKMAQREP 315

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
                    I GT   +   L A P++    EF+G+RG G                    
Sbjct: 316 MNDLVVHVVIGGTP-RLW-SLTAKPMFDAAGEFAGYRGVG--RDVTERWRAEQAEAENRA 371

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
           K S L  +               +       L  + + +  T   +  D +        L
Sbjct: 372 KSSFLA-MMSHEIRTPMNGVLGLANSLLETKLDPEQQQAVTTIRDSGDDLLRILNDILDL 430

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
           +  E+   E E            +     ++   +     L     P L    +      
Sbjct: 431 SKLEAGRLEFEQADFSPTTL--VESVRAIIEPEVRGKGIELKVDIDPRLPPSLNGDAARI 488

Query: 323 PETVDKCPI-PFFVYSHGNLFYANPSFLLLTKYKSVD--DIEIAGGLSTLLDAPKLSDNN 379
            + +             G++            + +V+    +   G+S        +D  
Sbjct: 489 RQVLLNLAANAVKFTEQGSIAIVLTCVKRNDSHATVEWQVTDTGIGISPDRVGSLFTDFA 548

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI-EPEDV 438
                +  R   T +  +     ++    +    +        +F  ++P +     +  
Sbjct: 549 QADVSINRRFGGTGLGLAISRRIVEQMGGDIAVTSREGEGSTFRFSLDLPWSNAWIADHR 608

Query: 439 DTRINKRKMEIEVMQ----LCSIL---EATSDGIAI 467
             R+    +   +      L  ++   ++T+  + +
Sbjct: 609 LDRLGSDDLRTRIAMLGRPLRVLIAEDDSTNQMVVM 644


>gi|39933571|ref|NP_945847.1| sensor histidine kinase [Rhodopseudomonas palustris CGA009]
 gi|39647417|emb|CAE25938.1| sensor histidine kinase with PAS/PAC and Response regulator
           receiver domains [Rhodopseudomonas palustris CGA009]
          Length = 1093

 Score =  307 bits (787), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 108/689 (15%), Positives = 218/689 (31%), Gaps = 69/689 (10%)

Query: 170 SRNREFSGFRGFGIVHVNRVDND----PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF 225
            R+REF    GF I   +R+ +D       L  R       L     G        +   
Sbjct: 255 DRSREF----GFDIGKPSRIQDDFPRMSELLLLRKGGDTPTLVADSAGDRFGAGWDWAEL 310

Query: 226 SQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP--------------E 271
                   + M+  VS  +   A ++  +      +L +   + P               
Sbjct: 311 PNGPRLAVVEMRPYVSLTSVQTAVRNSTILGGTVAILVAMLMAFPLARSLTRPLVRITNS 370

Query: 272 QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL-----TPETV 326
              F +  +    K      +   ++      S     +++   +  +          T+
Sbjct: 371 IVAFSSSGVPVKVKTGGGHEINMLAEAFTRMASESQRKAVALASEVEQRSRIAEVLQNTI 430

Query: 327 DKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
           D    P  V    G +   NP+        S   +          DA          P++
Sbjct: 431 DNMVDPVLVADANGMVILTNPAARETFGQLSGVGMLNTTRSFDRFDADGNPMAQDQSPLL 490

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
                 T I     +  I   R + L     P    N+  E      +  +   T+  + 
Sbjct: 491 RAYHGETIINFEFAVQPIGSARRSYLIANGRPL--RNETGEIQGAVMVYHDITKTKKAED 548

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            +        +I++   D    ++ +G I   +     + G+  E+ + + F        
Sbjct: 549 ALRRSEQMSRAIIDTALDAFVQLDAQGRITDWSPHAESMLGWSREEAIGQDFGELALPPD 608

Query: 506 PSV-----MNHYLTEILSL-DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS--LT 557
            +         ++  I     + Q          ++   ++L + +  LP    +   + 
Sbjct: 609 QTREIKTGYRRFIEAIEHDMSVIQGHRIEIEAVRRDGSPIALEVSMTALPVEGRFVVNVF 668

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
           M D++E    + +L  ++K+              ++H+    LT I G  ++I +   G 
Sbjct: 669 MRDLTEKIAFEEQLRQSQKM-----ESIGQLTGGIAHDFNNMLTVITGTIDIISD---GV 720

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
              P     A  I  + +   ++   LL  ++    K  L  +   ++  +S   SL++ 
Sbjct: 721 ADQPHLAAIAKLISEAADRGAELTRLLLAFAR----KQPLRPDETEVNALLSGLQSLLRP 776

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT------- 730
               + I + T  A +   I  D   ++   +N+  NA    P GG++ I T+       
Sbjct: 777 TL-GEPIEVETVLAPDTWSIYVDRGQLESALVNLAVNARDAMPKGGKLTIETSNVVVDPD 835

Query: 731 -------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
                      + V++ + D+G G+      K   PF          G+GTGLGL +   
Sbjct: 836 LGKRFGDLAPGDYVMIAITDSGCGIPETIRSKVFDPFFTTK----EVGKGTGLGLSMVYG 891

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
            +  + G   + S   +GT   +  P   
Sbjct: 892 FIKQSGGHITLDSEEGQGTTFRLYLPRAQ 920



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/257 (10%), Positives = 58/257 (22%), Gaps = 18/257 (7%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-----NHIGDLLKRQNT 142
            +DA G + + S      +G    + IG    +++                 + ++   +
Sbjct: 570 QLDAQGRITDWSPHAESMLGWSREEAIGQDFGELALPPDQTREIKTGYRRFIEAIEHDMS 629

Query: 143 W----YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
                  +      +G+ + + + + ALP+  R      F     +             +
Sbjct: 630 VIQGHRIEIEAVRRDGSPIALEVSMTALPVEGR------FVVNVFMRDLTEKIAFEEQLR 683

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
           +  K  S                  I                 +       +      E 
Sbjct: 684 QSQKMESIGQLTGGIAHDFNNMLTVITGTIDIISDGVADQPHLAAIAKLISEAADRGAEL 743

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
             LL +     P + D   +N      +           E    L+              
Sbjct: 744 TRLLLAFARKQPLRPDETEVNALLSGLQSLLRPTLGEPIEVETVLAPDTWSIYVDRGQLE 803

Query: 319 ENLTPETV---DKCPIP 332
             L    V   D  P  
Sbjct: 804 SALVNLAVNARDAMPKG 820



 Score = 47.7 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 30/378 (7%), Positives = 87/378 (23%), Gaps = 32/378 (8%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIG-----MRLCDVSDILHIDPNNHIGDLLKR--QNT 142
           DA+G +   +    +T G  +   +G               +    +    LL+     T
Sbjct: 441 DANGMVILTNPAARETFGQLSG--VGMLNTTRSFDRFDADGNPMAQDQ-SPLLRAYHGET 497

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
                      G+     +     P+ +   E  G     + H            +R ++
Sbjct: 498 IINFEFAVQPIGSARRSYLIANGRPLRNETGEIQGA--VMVYHDITKTKKAEDALRRSEQ 555

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPP----PHLRMKNKVSSLTEYYAHKDDVLK--- 255
               + +           +  I              R +       E     D   +   
Sbjct: 556 MSRAIIDTALDAFVQLDAQGRITDWSPHAESMLGWSREEAIGQDFGELALPPDQTREIKT 615

Query: 256 ------TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
                       ++  +    E E     + +    +     L    +            
Sbjct: 616 GYRRFIEAIEHDMSVIQGHRIEIEAVRR-DGSPIALEVSMTALPVEGRFVVNVFMRDLTE 674

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
            ++      ++   E++ +         +  L     +  +++   +         ++ L
Sbjct: 675 KIAFEEQLRQSQKMESIGQLTGGIAHDFNNMLTVITGTIDIISDGVADQ--PHLAAIAKL 732

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
           +           + ++ +   +        ++ +     + L     P        E + 
Sbjct: 733 ISEAADRGAELTRLLLAFARKQPLRPDETEVNALL----SGLQSLLRPTLGEPIEVETVL 788

Query: 430 QNGIEPEDVDTRINKRKM 447
                   VD    +  +
Sbjct: 789 APDTWSIYVDRGQLESAL 806


>gi|189501026|ref|YP_001960496.1| multi-sensor hybrid histidine kinase [Chlorobium phaeobacteroides
           BS1]
 gi|189496467|gb|ACE05015.1| multi-sensor hybrid histidine kinase [Chlorobium phaeobacteroides
           BS1]
          Length = 993

 Score =  307 bits (787), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 117/571 (20%), Positives = 226/571 (39%), Gaps = 50/571 (8%)

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH--PSLSAYFDEGENLT 322
           E+  L +Q      N+N   K      L+   ++    L   +    +      E EN  
Sbjct: 29  EQELLDKQNALREQNINLIRKSIELSDLRRQLEDKNYELELSSEKLDTTLRSLRESENTL 88

Query: 323 PETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
              +   P     V     + Y N S   +  ++S         +         ++ + I
Sbjct: 89  SSILSNSPDTIVAVDDSHRIIYMNRS---MPGHQSE------ISVGKHFCEHITAERHDI 139

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
               + +  RT + A      +Q N  +        F    Q         I  +  + +
Sbjct: 140 YHTTIEQVFRTGMPAKLESTVVQQNGRSVD--FESRFGPCMQEGAITSVVMISTDISERK 197

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILS----TNRAVSKLFGYPVEDILRK-- 495
             +++++  +  L            ++ RE   L      NR   +L G P    +R+  
Sbjct: 198 RIEKELKRSLDDLERFNR------FMVGREQTNLELKEEVNRLCEEL-GRPPRYAVRRAG 250

Query: 496 PFTVFLEQNTPSVMNH--YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553
              V++  N+   +     + E     + +  ++ +L   + E L++L     +      
Sbjct: 251 NGDVYVPLNSREGIRPDSAVNEHDHKRVWKEPDQESLKQRQREALINLVEDANRARNEL- 309

Query: 554 YSLTMHDISEWKQEKN---KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
                  ++  ++ +    + +     A+  +  KS+FLA +SHEIRTP+  +IG SE++
Sbjct: 310 -------MNANRKLEASIARANTMASEADAANKAKSEFLANMSHEIRTPMNGVIGMSELL 362

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
                    +    ++A  I+ SG  +L ++ND+LD SKIE+ K+ +     +L + + E
Sbjct: 363 LRSTL----DKEQKKFAETINASGKNLLHLLNDILDFSKIEADKLEIEEIDFNLLDLLDE 418

Query: 671 AISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
            I++    A +K +        +IP +   D   +KQI +N++SNAI FT  G +I+++ 
Sbjct: 419 IINMFSYKAGKKGLNFTFLPDEDIPLLLRGDPGRIKQILVNLISNAIKFTDEG-EILVNV 477

Query: 730 THT----SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
                   N  +   V DTG+G+    ++   +PF Q   S   +  GTGLGL ++  + 
Sbjct: 478 ELEEDFGDNARIRFTVSDTGIGIDESRMDAIFEPFVQADGSTIRKYGGTGLGLSISNKLA 537

Query: 786 DANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
               G+  + STP++G++           HP
Sbjct: 538 RNMGGRIQVRSTPSQGSMFYFSIDFIKQQHP 568


>gi|330508123|ref|YP_004384551.1| two-component hybrid sensor and regulator [Methanosaeta concilii
           GP-6]
 gi|328928931|gb|AEB68733.1| two-component hybrid sensor and regulator [Methanosaeta concilii
           GP-6]
          Length = 808

 Score =  307 bits (787), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 85/255 (33%), Positives = 137/255 (53%), Gaps = 10/255 (3%)

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            DI E K+ +  L  +K+ AE  ++ KS+FLA +SHEIRTPL A+IG + ++     G  
Sbjct: 395 EDILERKKIEEDLRRSKEAAEAATNAKSEFLANMSHEIRTPLNAVIGLTGILL----GTD 450

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
            N    ++   I  SG+ +L I+ND+LD SKI+SGKM L  +P  + +++ +A+ L+   
Sbjct: 451 LNREQRDHMEIIRSSGDALLAIINDILDFSKIDSGKMELEVQPFDVKKSIEDAVDLMAPV 510

Query: 679 ANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS---- 733
           A EK + +      +IP  I++D   ++QI +NIL NA+ FT SG ++ I  +       
Sbjct: 511 AQEKGLTLGYDIEESIPKTIVSDPTRLRQILVNILGNAVKFTSSG-EVRILVSGRDLGGR 569

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
             E+   V DTG+G+   ++    + F Q+      R  G GLGL ++K +V+   G  +
Sbjct: 570 EHEIHFAVMDTGIGIPAEKMNCLFQSFCQVEPCTTRRYGGAGLGLAISKRLVELMDGSIW 629

Query: 794 IFSTPAKGTLIEIIF 808
             S   KG+      
Sbjct: 630 AESEEGKGSTFHFTI 644


>gi|300718620|ref|YP_003743423.1| Aerobic respiration control sensor protein [Erwinia billingiae
           Eb661]
 gi|299064456|emb|CAX61576.1| Aerobic respiration control sensor protein [Erwinia billingiae
           Eb661]
          Length = 776

 Score =  307 bits (787), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 90/449 (20%), Positives = 184/449 (40%), Gaps = 22/449 (4%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L             L+      EN   +     ++       +       E
Sbjct: 81  EESRQRLSRLVDKLEEMRHRDLELNQQMK--ENITQLNHEIADRIKAEEARLQVMAKLKE 138

Query: 437 DVDTRINKR-KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
           ++  R   + ++E +   L S L+A+ D +   N +      NRA+  L G   + ++  
Sbjct: 139 EMARREEAQIELEQQSSFLRSFLDASPDLVFYRNIDQQFSGCNRAMELLTGKSEKQLIGL 198

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSC 553
                 +++  + +     ++   ++  T E+        +    +R +    ++   S 
Sbjct: 199 TPRDVYDEDAATKVLETDDKVFRHNVSLTYEQWLQYPDGRKACFEIRKVPYYDRIGKRSG 258

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
                 DI+E K+ ++ L +        S  K+ F++ +SHE+RTPL  I+G S ++ + 
Sbjct: 259 LMGFGRDITERKRYQDALEN-------ASREKTTFISTISHELRTPLNGIVGLSRILLDT 311

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
                 N   ++Y   I  S   + +I ND++++ KIE  K+ L  +PV     +++  +
Sbjct: 312 DL----NQEQLKYLKTIHVSAITLGNIFNDVIEMDKIERRKVQLDIQPVDFTGFLADLEN 367

Query: 674 LVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
           L  L A  K +         +P  I+ D   ++QI  N++ NA+ FT  G  II+   + 
Sbjct: 368 LSGLLAQPKELKFVLDPQLPLPHKIMTDGTRLRQILWNLIGNAVKFTQKGS-IIVRVAYL 426

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMGK 791
             + +   V D+G+G+   E +K    + Q+ +    +   GTG+GL +++ +  +  G 
Sbjct: 427 GEDCLRFEVEDSGMGIPQDEQDKIFAMYYQVKDQHGGKPATGTGIGLAVSRRLAQSMGGD 486

Query: 792 FYIFSTPAKGTLIEIIF--PLYDTSHPHD 818
             + S P  G+   +    P      P D
Sbjct: 487 ITVHSAPGTGSCFTLTVNAP-RIAEQPED 514



 Score = 40.8 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 23/158 (14%), Positives = 47/158 (29%), Gaps = 17/158 (10%)

Query: 67  YLDSENTF--VFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI 124
            L+ +++F   F      + F  NID        +  +    G    ++IG+   DV D 
Sbjct: 149 ELEQQSSFLRSFLDASPDLVFYRNIDQQ--FSGCNRAMELLTGKSEKQLIGLTPRDVYD- 205

Query: 125 LHIDPNNHIGDLLKRQNTWYGKTT-----LWPIEGTNLYVPIDLAALPIYSRNREFSGFR 179
                 +    +L+  +  +          W           ++  +P Y R  + SG  
Sbjct: 206 -----EDAATKVLETDDKVFRHNVSLTYEQWLQYPDGRKACFEIRKVPYYDRIGKRSGLM 260

Query: 180 GFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSV 217
           GFG           +   +   ++ +            
Sbjct: 261 GFG--RDITERKRYQDALENASREKTTFISTISHELRT 296


>gi|261417268|ref|YP_003250951.1| multi-sensor hybrid histidine kinase [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261373724|gb|ACX76469.1| multi-sensor hybrid histidine kinase [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|302327259|gb|ADL26460.1| sensor histidine kinase/response regulator [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 1329

 Score =  307 bits (787), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 93/368 (25%), Positives = 163/368 (44%), Gaps = 24/368 (6%)

Query: 456 SILEAT-----SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
           +IL+       +  + I ++   +   ++ ++       +D++ +P     +   P  + 
Sbjct: 456 TILDTIMLSAGNSILVIFDKNRKVKYMSKQLTDYLVVDWKDVMGQPLENMPKCGMPEDVV 515

Query: 511 HYLTEILSLDLRQ--TLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568
             L +          T    TL +  +         +K       Y L+M DISE     
Sbjct: 516 VALKKTFDEQGVWKDTFMLQTLNTHTDTWFRGEACTLKVQESVVGYMLSMIDISEVVAA- 574

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
                 ++IAE  +  KS+FLA +SHEIRTP+ AIIG + +I+  +     + R + +  
Sbjct: 575 ------REIAEHATQAKSEFLANMSHEIRTPMNAIIGMAHLIQETKL----DERQLGFIE 624

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I  +   +L I+N++LD SKIE+ K +L    + L + + E  +L ++    + I +  
Sbjct: 625 RISHAATSLLGIINNILDFSKIEANKQDLEITQLVLQDIIGEVAALAEVRIAGRPIELIV 684

Query: 689 SFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS----NEEVILRVRD 743
                IP + + D   + QI  N+++NA  FT SG  I +          N ++   V D
Sbjct: 685 DIDPEIPEVLMGDPLRLSQIFTNLINNATKFTESGS-ITLQIKQEQVIGNNIKLSFSVID 743

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TG+GMT  +L      F Q   S   +  GTGLGL ++K++V+   G+  + S   KG+ 
Sbjct: 744 TGIGMTTDQLHHLFNAFTQADGSITRKYGGTGLGLVISKSLVELMGGELQVESEYGKGSK 803

Query: 804 IEIIFPLY 811
                 L 
Sbjct: 804 FFFTITLA 811


>gi|254424116|ref|ZP_05037834.1| PAS fold family [Synechococcus sp. PCC 7335]
 gi|196191605|gb|EDX86569.1| PAS fold family [Synechococcus sp. PCC 7335]
          Length = 534

 Score =  307 bits (787), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 80/418 (19%), Positives = 175/418 (41%), Gaps = 42/418 (10%)

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
            E    +         Q  +      ++ E  + R  +               A+   IA
Sbjct: 139 DEVLARIQTHLTLHRLQQQQQAHTLRLQQEIDNRRRAE-------ETFKKSFNASPSPIA 191

Query: 467 IIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
           +    +   ++ N +  +L GY   +I+ K           S     ++++   D     
Sbjct: 192 VTRLSDDTFIAVNPSFLRLSGYSQPEIMGKTTAELAMWQDQSHYQAAISQVSLNDSFDNE 251

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
           E        + +++   I    L    C    ++DI+E K+ +                 
Sbjct: 252 ELEYKTRQGDLRIVLASIKKIVLDGEPCALTIINDITERKRLE----------------- 294

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
           ++F++ VSHE+RTP+ ++ G  +++     G L   +  +  +    +   ++ +VND+L
Sbjct: 295 NEFISVVSHELRTPMHSLAGALDLLSTGELGVLT-EQGQQILSVATTNAERLIRLVNDIL 353

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
           D+ +++SGKM+++    ++   V++A+  +Q  A+  ++ ++   + ++P +  D   + 
Sbjct: 354 DLERLKSGKMSVNRSNCNIANLVTQAVESMQAMADNAQVQLQVQ-SMSVP-VTVDCDRIL 411

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNE--------------EVILRVRDTGVGMTNY 751
           Q   N+LSNAI F+P+GG ++++                     ++ + + D G G+   
Sbjct: 412 QTLTNLLSNAIKFSPAGGTVLLTVELDKPTLEEPASSNTLQTVPQLHITLSDQGRGIPFE 471

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +LE   + F Q+  S   R  GTGLGL + + ++  + G+ +  ST  +G+   +  P
Sbjct: 472 QLETIFERFQQVDASDSRRKGGTGLGLAICRQILQQHGGRIWAESTLGQGSTFHVCLP 529



 Score = 41.6 bits (96), Expect = 0.53,   Method: Composition-based stats.
 Identities = 10/112 (8%), Positives = 36/112 (32%), Gaps = 2/112 (1%)

Query: 48  SFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIG 107
             +Q   T + Q+ + N    +      F+  P  +  T  + +      ++    +  G
Sbjct: 155 QQQQQAHTLRLQQEIDNRRRAEETFKKSFNASPSPIAVT-RL-SDDTFIAVNPSFLRLSG 212

Query: 108 NYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYV 159
               +++G    +++              +   +++  +   +     +L +
Sbjct: 213 YSQPEIMGKTTAELAMWQDQSHYQAAISQVSLNDSFDNEELEYKTRQGDLRI 264



 Score = 41.2 bits (95), Expect = 0.71,   Method: Composition-based stats.
 Identities = 26/219 (11%), Positives = 46/219 (21%), Gaps = 29/219 (13%)

Query: 285 KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC------PIPFFVYSH 338
             +    +Q +          + H        +      ET  K       PI     S 
Sbjct: 138 VDEVLARIQTHLTLHRLQQQQQAHTLRLQQEIDNRRRAEETFKKSFNASPSPIAVTRLSD 197

Query: 339 GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI----------KPVMLYR 388
                 NPSFL L+ Y   + +        +                      + +    
Sbjct: 198 DTFIAVNPSFLRLSGYSQPEIMGKTTAELAMWQDQSHYQAAISQVSLNDSFDNEELEYKT 257

Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
                    A +  I  + E           +  +                       ++
Sbjct: 258 RQGDLRIVLASIKKIVLDGEPCALTIINDITERKRLENEFISVVSHELRTPMHSLAGALD 317

Query: 449 IEV--------MQLCSILEATSDGIAIINREGIILSTNR 479
           +           Q   IL      +A  N E +I   N 
Sbjct: 318 LLSTGELGVLTEQGQQILS-----VATTNAERLIRLVND 351


>gi|160887321|ref|ZP_02068324.1| hypothetical protein BACOVA_05339 [Bacteroides ovatus ATCC 8483]
 gi|156107732|gb|EDO09477.1| hypothetical protein BACOVA_05339 [Bacteroides ovatus ATCC 8483]
          Length = 657

 Score =  307 bits (787), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 116/515 (22%), Positives = 190/515 (36%), Gaps = 27/515 (5%)

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
           S    E        +    I  + Y    G   +++  F      K+   +         
Sbjct: 36  SELIRENSQEILSVLAAHQIALWEYDIITGECSFSDDYF-STLGLKNAGVLFEDIDSFYR 94

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
              P  ++        +  SD        R+  I    +           K +       
Sbjct: 95  FVHPDDTEAYKQAFAEMLSSDSKTS--QIRVRCIGEQGKVVWLEDHFLSYKESCKSHPGK 152

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
                         ++ ++        I+EA  + I I +    I     A   +  +PV
Sbjct: 153 VLAYTVNVTSQCEKEQHIKYLEEYNRKIIEALPEFIFIFDDNFFITDVLMAPGTILLHPV 212

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
           E +               +    + E L     + +E        +  +   +  I    
Sbjct: 213 EVLRGADGRSIYSPEVSDLFICNIRECLQDGQLKEIEYPVEV---DGGVHYFQARIAPFE 269

Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
             +     +HDI +  Q   +L  AK+ AE     KS FLA +SHEIRTPL AI+GFSE+
Sbjct: 270 -GNRVLALIHDIGDRIQRSQELIEAKRRAEDADKMKSVFLANMSHEIRTPLNAIVGFSEI 328

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           I        G     EY   I R+ NL+L ++ND+LD+S+IESGK  +HF+ V +   V 
Sbjct: 329 IA----VTEGEEEKREYLEIIQRNSNLLLQLINDILDLSRIESGKSEMHFQQVEIAGLVE 384

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
           E   + QL      + ++            D   V Q+  N LSNAI  T  G  I +  
Sbjct: 385 EVEKVHQLKMKS-NVELKVIRPEGEYWTSTDRNRVMQVLFNFLSNAIKNTEKGS-ITLGL 442

Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
            H     + L V DTG G++  +L +    F ++        +GTGLGL + K++V+   
Sbjct: 443 KHE-GPWLKLYVSDTGCGISKEKLPQIFTRFEKL----NDFVQGTGLGLSICKSIVERLG 497

Query: 790 GKFYIFSTPAKGTLIEIIFP-------LYDTSHPH 817
           G+  + S   +G++  +  P       + +   PH
Sbjct: 498 GRIEVTSELGQGSVFALYLPYQEIPKEVVERRLPH 532


>gi|18310298|ref|NP_562232.1| two-component sensor histidine kinase [Clostridium perfringens str.
           13]
 gi|18144978|dbj|BAB81022.1| two-component sensor histidine kinase [Clostridium perfringens str.
           13]
          Length = 821

 Score =  307 bits (787), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 94/388 (24%), Positives = 182/388 (46%), Gaps = 15/388 (3%)

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
           +       +  +    ++ +++E  +L  + E   D I  I+ EG I   N+AV  + GY
Sbjct: 409 LYYVLRINDITEEYKMEKNLKLEEQRLRGVTENIKDLIFTIDVEGKISYVNKAVIDVLGY 468

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
             E+++ K +   L   +   +    ++  + D   T++K+      ++ L+ L  I  +
Sbjct: 469 SEEELIGKNYYDLLLVESNLNIID--SKYFNEDKILTIDKV----RSKKGLVQLESISSR 522

Query: 548 LPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
           +  +      +     +I + ++ +  L +  +  ++    +S+F A +SHE+RTP+  I
Sbjct: 523 IKDNKNNTLGWVRVARNIEDVREIEI-LKNKFEEIKQYDKVRSEFFANLSHELRTPINII 581

Query: 604 IGFSEVIKNQRFGPLGNPR-YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
               +++   +         Y +Y   + ++   +L +VN+L+DI+KI+SG + + F   
Sbjct: 582 YSCIQLLNTSKKNKANFANLYDKYEKTLKQNCFRMLRLVNNLIDITKIDSGFIKMDFINY 641

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
            + +   +    V  Y   K I I          I  D   +++I LN+LSNAI FT  G
Sbjct: 642 DIIKLTEDITMSVIPYVESKNIDIIFDTDYEELEIRCDPDKIERIILNLLSNAIKFTEPG 701

Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
           G+I +S        V +RV+DTG+G+ ++  E   + F Q   S     EG+G+GL L K
Sbjct: 702 GKIEVSI-FADEAWVDIRVKDTGIGIPSHMKEFIFERFIQNDKSLNRNKEGSGIGLSLVK 760

Query: 783 AMVDANMGKFYI-FSTPAKGTLIEIIFP 809
           ++V+ + GK ++  S    G+   I+ P
Sbjct: 761 SLVELHEGKVFLRESNE-SGSEFSILLP 787



 Score = 45.0 bits (105), Expect = 0.052,   Method: Composition-based stats.
 Identities = 7/38 (18%), Positives = 17/38 (44%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS 122
             + ID  G +  +++ +   +G    ++IG    D+ 
Sbjct: 445 LIFTIDVEGKISYVNKAVIDVLGYSEEELIGKNYYDLL 482


>gi|302337012|ref|YP_003802218.1| multi-sensor hybrid histidine kinase [Spirochaeta smaragdinae DSM
           11293]
 gi|301634197|gb|ADK79624.1| multi-sensor hybrid histidine kinase [Spirochaeta smaragdinae DSM
           11293]
          Length = 944

 Score =  307 bits (787), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 111/495 (22%), Positives = 210/495 (42%), Gaps = 26/495 (5%)

Query: 343 YANPSFLLLTKYKSVDDI-EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401
           + N     +T    V+++  +  G+   +   +   +  + P    R      A +  + 
Sbjct: 177 FINIEEEEITSLSFVEELNRLPDGIRQWIVFGERGSDAVLSPPPAMRRLGIRFAMTIPVI 236

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL-CSILEA 460
           +           +    +   +   ++     +   +  R++  +    V     S++++
Sbjct: 237 SETKPGAVLFFFSHQAKQMDVEARRSLEIIASQFGSLVARLHSERKFRSVEGFGRSLIKS 296

Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP--FTVFLEQNTPSVMNHYLTE--- 515
              G+   NR+GII   N A  +L G   + ++ K          +    +  +      
Sbjct: 297 MPSGLITRNRDGIITHFNLAAEQLLGIKGDTVIGKRDLPDALFFFDEKGNIIEHFDAPTF 356

Query: 516 -ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNK 570
            +L          +      +   + L +  + L           +TM D+S+  +  ++
Sbjct: 357 LVLESGKP-LRNVLVRAIRPDGSTVWLSVNGEPLFGKDEEPVAAVITMKDVSDHLRLVDE 415

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           L  A+++A   S  KS FLA +SHEIRTPL+ I+G ++++ +            E    +
Sbjct: 416 LEQARQMAVTASDSKSRFLANISHEIRTPLSGIMGMTDLLLSGPL----TEDQRENLFLM 471

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
             +  L+LDI+N +L+ISKIESGK++L  EP  L  A+++A   + +   EK I++    
Sbjct: 472 KEAEELLLDIINKVLEISKIESGKLSLELEPFRLRGAINKAALPIFMGCKEKGIVLDIDV 531

Query: 691 ANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII---ISTTHTSNEEVI--LRVRDT 744
           + +IP  ++ D   + Q+  N LSNA+ FT SG  I    + T+   N ++     V+DT
Sbjct: 532 SPSIPDRLIGDGSRLTQVLTNFLSNALKFTESG-TITLTVVETSRNENGKIELFFSVKDT 590

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G+ +         F QI +    R +GTGLGL ++K +V+   G   + S   +G+  
Sbjct: 591 GIGIPSDAQTTIFDDFRQIDSGPAKRHQGTGLGLAISKKLVELMDGSIGVESEGGQGSRF 650

Query: 805 EII--FPLYDTSHPH 817
                F L D   P 
Sbjct: 651 FFSAMFTLLDEGEPE 665



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 38/414 (9%), Positives = 96/414 (23%), Gaps = 56/414 (13%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + I+  G +  +++   +  G  +  +IG+   D+    H+   + +  L     +   
Sbjct: 17  VFIIEPDGMIAALNKRALRLTGLDSTALIGISFSDLLLPEHV---SLLKRLYLSGESSSD 73

Query: 146 K-----TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
                 T L   EG  ++V +         R++ FSG+    +        +        
Sbjct: 74  IQGRMNTVLLGREGHRVHVNLRAQGF----RDQMFSGYM--VVCREVGHHLELERQRSLQ 127

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL-------------------------- 234
                 L  I+    +V                                           
Sbjct: 128 HDLAMALVGIQNIEEAVNLVLDTGLKISECDGGALFLRGAENGRWKLSSFINIEEEEITS 187

Query: 235 -RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHT---------INLNQYT 284
                +++ L +         +     +L+   +       F                + 
Sbjct: 188 LSFVEELNRLPDGIRQWIVFGERGSDAVLSPPPAMRRLGIRFAMTIPVISETKPGAVLFF 247

Query: 285 KKQYFGTLQNNSKESFEYLSHR-----NHPSLSAYFDEGENLTPETVDKCPIPFF-VYSH 338
                  +   ++ S E ++ +             F   E      +   P         
Sbjct: 248 FSHQAKQMDVEARRSLEIIASQFGSLVARLHSERKFRSVEGFGRSLIKSMPSGLITRNRD 307

Query: 339 GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398
           G + + N +   L   K    I        L    +  +         +    +      
Sbjct: 308 GIITHFNLAAEQLLGIKGDTVIGKRDLPDALFFFDEKGNIIEHFDAPTFLVLESGKPLRN 367

Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
            L        +++ ++        +  E +       +  D      ++E    
Sbjct: 368 VLVRAIRPDGSTVWLSVNGEPLFGKDEEPVAAVITMKDVSDHLRLVDELEQARQ 421



 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 53/129 (41%), Gaps = 1/129 (0%)

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH- 511
           ++   +E   D + II  +G+I + N+   +L G     ++   F+  L     S++   
Sbjct: 5   RIEKFIEYVPDAVFIIEPDGMIAALNKRALRLTGLDSTALIGISFSDLLLPEHVSLLKRL 64

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571
           YL+   S D++  +  + LG       ++LR    +    S Y +   ++    + + + 
Sbjct: 65  YLSGESSSDIQGRMNTVLLGREGHRVHVNLRAQGFRDQMFSGYMVVCREVGHHLELERQR 124

Query: 572 SHAKKIAEK 580
           S    +A  
Sbjct: 125 SLQHDLAMA 133


>gi|269792981|ref|YP_003317885.1| PAS/PAC sensor hybrid histidine kinase [Thermanaerovibrio
            acidaminovorans DSM 6589]
 gi|269100616|gb|ACZ19603.1| PAS/PAC sensor hybrid histidine kinase [Thermanaerovibrio
            acidaminovorans DSM 6589]
          Length = 1362

 Score =  307 bits (787), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 129/787 (16%), Positives = 250/787 (31%), Gaps = 84/787 (10%)

Query: 90   DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD--ILHIDPNNHIGDLLKRQNTWYGKT 147
            D  G +   +      +G    ++ G    D+       +     +        +  G+ 
Sbjct: 364  DPDGRVVNANASAASILGVPEGEVRGRDFMDLIALEHGDLRGVPQVHASFGGVVSVRGED 423

Query: 148  TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                   +++         P        +      +      D   R   K  +     L
Sbjct: 424  RFLEGSVSSIVG-------PNGDVTGSVT------VFRDVTQDRRNREELKEREAFQREL 470

Query: 208  HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY--PLLTSE 265
             EI      V   +       +P     +  +  S          V    +   P+    
Sbjct: 471  LEIMPVGVMVVDPESRSIESVNPHAVKLLGVEDPSQLVGRRCHGSVCPALEGSCPICDLG 530

Query: 266  ESSLPEQEDFHTINL--NQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
                  +      +    Q  K     TL    K    ++       +            
Sbjct: 531  NPMDNAERTLLRSDGSQPQVLKTARMVTLGGRRKLLEVFMDISTLKHMEEELRRANERLD 590

Query: 324  ETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
              +       + +       Y +P +  +  Y+  +          LL            
Sbjct: 591  LVIRGTNDGIYDWDFASGSLYLSPRWKQILGYQDNELENSHETFVRLLHPDDRPRVEEYL 650

Query: 383  PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             + L   +      S     I  +      ++       ++    +   G   +  D ++
Sbjct: 651  GLYL---EGRVRNYSIEFRMIHKDGSVRWILS-KGTAVRDRDGRPIRMAGSHSDITDRKM 706

Query: 443  NKRKMEIEVMQLCSILEATSDGIAI----INREGI--ILSTNRAVSKLFGYPVEDILRK- 495
             + ++      L  +  A ++ I +     +      + +   A+  + GY      R+ 
Sbjct: 707  AEEELIRRAEILSGLTSAANNLINVPTDSWDEALTSSLAAVGDALGAIGGYAFSYDDRRE 766

Query: 496  ---------PFTVFLE--QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE--------- 535
                     P              +   + E     L   +  +      +         
Sbjct: 767  AAAMTHRWAPMGHEFPKTGEIRYHLMGPMREAHRNGLAFQVGDLRELPQGDPMGEMMKSL 826

Query: 536  EKLLSLRIIIKKLPFSSCYSLTMHDI----------------------SEWKQEKNKLSH 573
                 + + I        +     D+                       +      +   
Sbjct: 827  GVTGLVTVPILGPEGCHGFVCFGWDVPNRLNDDQLGLLSLLGIMLKATMDRLSSLAETLE 886

Query: 574  AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
            AK+ AE+ S+ KS FLA +SHEIRTP+ AI+G++++++     P   P+  E    I RS
Sbjct: 887  AKRRAEEASAAKSAFLANMSHEIRTPMNAILGYTQILERD---PSLGPKQREKVQAIIRS 943

Query: 634  GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS-FAN 692
            GN +L+++NDLLD+SKIE+G + +  E   L + + +   + +  A  K + +       
Sbjct: 944  GNHLLELLNDLLDLSKIEAGVLEIRQEVFPLRKMLQDVEVMFRGGAEAKGLHLLLEGLDQ 1003

Query: 693  NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-----VILRVRDTGVG 747
                +  D R ++Q+ +N+L NAI FT  G  ++ +     ++E     +  +V DTG G
Sbjct: 1004 APHWVSGDQRKLRQVLVNLLGNAIKFTSEGMVVLRAQEIHRDQEGGRTQLRFQVEDTGPG 1063

Query: 748  MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
            +   ELE    PFGQ   S  ++  GTGLGL ++K +V+A  G   + S    GT+  + 
Sbjct: 1064 IPEEELEVIFDPFGQ--GSVGLKAGGTGLGLAISKRIVEAMGGDIRVSSQVGHGTVFTVT 1121

Query: 808  FPLYDTS 814
             PL   S
Sbjct: 1122 VPLGLPS 1128



 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 46/408 (11%), Positives = 113/408 (27%), Gaps = 36/408 (8%)

Query: 197 GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256
            +RL    + L  +  G    + +   + +  S    L +        ++       L+ 
Sbjct: 343 QERLADLSATLESLSDGVLVCDPDGRVVNANASAASILGVPEGEVRGRDFM--DLIALEH 400

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQY-TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
                +    +S          +     +     G   + +     +             
Sbjct: 401 GDLRGVPQVHASFGGVVSVRGEDRFLEGSVSSIVGPNGDVTGSVTVFRDVTQDRRNREEL 460

Query: 316 DEGENLTPETVDKCPIPFFVYSHGN--LFYANPSFLLLTKYKSVDDIEIA-------GGL 366
            E E    E ++  P+   V    +  +   NP  + L   +    +            L
Sbjct: 461 KEREAFQRELLEIMPVGVMVVDPESRSIESVNPHAVKLLGVEDPSQLVGRRCHGSVCPAL 520

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
                   L +        L RSD +          +       L   F+          
Sbjct: 521 EGSCPICDLGNPMDNAERTLLRSDGSQPQVLKTARMVTLGGRRKLLEVFM---------- 570

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
                    +    +  + ++     +L  ++  T+DGI   +     L  +    ++ G
Sbjct: 571 ---------DISTLKHMEEELRRANERLDLVIRGTNDGIYDWDFASGSLYLSPRWKQILG 621

Query: 487 YPVEDIL--RKPFTVFLEQNTPSVMNHYLTEILSLDLR-QTLEKITLGSTKEEKLLSLRI 543
           Y   ++    + F   L  +    +  YL   L   +R  ++E   +      + +  + 
Sbjct: 622 YQDNELENSHETFVRLLHPDDRPRVEEYLGLYLEGRVRNYSIEFRMIHKDGSVRWILSKG 681

Query: 544 IIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
              +         + +  DI++ K  + +L    +I    +S  ++ +
Sbjct: 682 TAVRDRDGRPIRMAGSHSDITDRKMAEEELIRRAEILSGLTSAANNLI 729



 Score = 88.9 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/324 (10%), Positives = 78/324 (24%), Gaps = 30/324 (9%)

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
           +         H I  +    +       +   +  E ++      +S    E       T
Sbjct: 295 DPLEGISSRIHRIAQSGRFDEALPVEGDDELSDLAEDVNLLLRAVVS--SQERLADLSAT 352

Query: 326 VDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
           ++       V    G +  AN S   +      +                +   + +  +
Sbjct: 353 LESLSDGVLVCDPDGRVVNANASAASILGVPEGE----------------VRGRDFMDLI 396

Query: 385 MLYRSDRTCIA-ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
            L   D   +    A    +   R     +            +      +  +    R N
Sbjct: 397 ALEHGDLRGVPQVHASFGGVVSVRGEDRFLEGSVSSIVGPNGDVTGSVTVFRDVTQDRRN 456

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGI-ILSTNRAVSKLFGY-PVEDILRKPFTVFL 501
           + +++        +LE    G+ +++ E   I S N    KL G      ++ +     +
Sbjct: 457 REELKEREAFQRELLEIMPVGVMVVDPESRSIESVNPHAVKLLGVEDPSQLVGRRCHGSV 516

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL--RIIIKKLPFSSCYSLTMH 559
                          +                 +     +     +  L           
Sbjct: 517 CPALEGSCP------ICDLGNPMDNAERTLLRSDGSQPQVLKTARMVTLGGRRKLLEVFM 570

Query: 560 DISEWKQEKNKLSHAKKIAEKESS 583
           DIS  K  + +L  A +  +    
Sbjct: 571 DISTLKHMEEELRRANERLDLVIR 594



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 29/244 (11%), Positives = 79/244 (32%), Gaps = 17/244 (6%)

Query: 342 FYANPSFLLLTKYKSVDDIEIA--GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399
              N   + +T+ + +   E      L  LL +  L     +  +            S+R
Sbjct: 244 LDGNGVLVTVTRTRDIYAHEERTLWTLGVLLASIGLMGTLGVNLITRRMVLDPLEGISSR 303

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459
           +H I  +     A+   P E  ++  +      +  +           +  +  L + LE
Sbjct: 304 IHRIAQSGRFDEAL---PVEGDDELSD------LAEDVNLLLRAVVSSQERLADLSATLE 354

Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL 519
           + SDG+ + + +G +++ N + + + G P  ++  + F   +      +           
Sbjct: 355 SLSDGVLVCDPDGRVVNANASAASILGVPEGEVRGRDFMDLIALEHGDLRGVPQVHASFG 414

Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579
            +     +            S+  I+      +       D+++ ++ + +L   +    
Sbjct: 415 GVVSVRGEDRFLEG------SVSSIVGPNGDVTGSVTVFRDVTQDRRNREELKEREAFQR 468

Query: 580 KESS 583
           +   
Sbjct: 469 ELLE 472


>gi|170720805|ref|YP_001748493.1| PAS/PAC sensor hybrid histidine kinase [Pseudomonas putida W619]
 gi|169758808|gb|ACA72124.1| PAS/PAC sensor hybrid histidine kinase [Pseudomonas putida W619]
          Length = 1201

 Score =  307 bits (787), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 119/685 (17%), Positives = 234/685 (34%), Gaps = 37/685 (5%)

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +      E         +  + I       S F G G       D       +   + 
Sbjct: 283 SDRKLQLTTEEEQWLRRHPVMQVAIDETAAPLSYFDGNGHFRGITADLLDLIRLRTGLRF 342

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
                       +  ++             +          E+       L++    +  
Sbjct: 343 EVQRTNGIAEMIARLEDGRVNMIAALAVDDM--------NEEHLHLSRPYLESTYVLVTR 394

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
           +E       E      +      +    L     ++    +   + S++       +   
Sbjct: 395 TETPQYTSLEQLQGRRIAITRYSEMSELLATRYPQTGWIETESPYYSMALLSSGAVDAVI 454

Query: 324 ETVDKCPIPFFVYSHGNL---FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
            T+          +   +      +P+   +       ++      + L  +P+      
Sbjct: 455 TTLIDANHAVAGNAKLVIRSTVGTDPASFAMASSAQATELASILDKALLSISPEELGVIN 514

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
            +     + D +            W     LAM  +           +    +  +    
Sbjct: 515 NRWSGYSQHDDSN-----------WLGFRRLAMKVLLGTALLLLGALLWNARLRRQIKQR 563

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +  +R +  ++  + ++L  T   + + +R G + S N +  +     +++++ +     
Sbjct: 564 QHAERALNDQLEFMGALLNGTPHPMYVRDRAGCLQSCNASYLEAVQATLDEVIGRRLEDS 623

Query: 501 L---EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL-SLRIIIKKLPFSSCYSL 556
           L    ++T  +   YL  +++  +   +++      +E  +   +      L        
Sbjct: 624 LFAGSESTRQIHADYLQ-VMAAGVPLIIDRPLRLKDREITIYHWILPYRDSLGEVQGIIG 682

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
              DISE ++   +L  AK++A+  +  KS FLA +SHEIRTP+ A+IG  E+   +   
Sbjct: 683 GWIDISERRKLVQELREAKQLADDANRAKSTFLATISHEIRTPMNAVIGMLELAVKRAHQ 742

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
              +            S   +L ++ D+LDI +IESG ++L  EPV L   V     +  
Sbjct: 743 GQID---RTSLEVAHHSAKDLLGLIGDILDIVRIESGHLSLAPEPVDLAALVESVSRVFD 799

Query: 677 LYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
             A +K +      A +    +L D    KQI  N++SNAI FT  G Q+ IS       
Sbjct: 800 GQARQKGLAFDVVIAPSARCHVLLDPLRFKQILSNLISNAIKFTGQG-QVRISLCLREEA 858

Query: 736 -----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
                 + L VRDTG+G+ + +L++   PF Q     Q    GTGLGL + +++ +    
Sbjct: 859 PSAPPSLELEVRDTGIGIHDDDLQRLFNPFVQANPHSQGARAGTGLGLAICRSLCEMMGA 918

Query: 791 KFYIFSTPAKGTLIEIIFPLYDTSH 815
              I S P  GT +    PL     
Sbjct: 919 SLSIKSVPDFGTQVRFSVPLQRVDA 943



 Score = 38.5 bits (88), Expect = 5.3,   Method: Composition-based stats.
 Identities = 21/224 (9%), Positives = 47/224 (20%), Gaps = 15/224 (6%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL---HIDPNNHIGDLLKRQNTW-YG 145
           D  G L+  +    + +     ++IG RL D            +     ++         
Sbjct: 592 DRAGCLQSCNASYLEAVQATLDEVIGRRLEDSLFAGSESTRQIHADYLQVMAAGVPLIID 651

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +          +Y  I    LP      E  G  G  I              +   +   
Sbjct: 652 RPLRLKDREITIYHWI----LPYRDSLGEVQGIIGGWI--DISERRKLVQELREAKQLAD 705

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
             +  K    +    +                 +++    +    D       +      
Sbjct: 706 DANRAKSTFLATISHEIRTPMNAVIGML-----ELAVKRAHQGQIDRTSLEVAHHSAKDL 760

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
              + +  D   I     +       L    +        +   
Sbjct: 761 LGLIGDILDIVRIESGHLSLAPEPVDLAALVESVSRVFDGQARQ 804


>gi|292490282|ref|YP_003525721.1| PAS sensor protein [Nitrosococcus halophilus Nc4]
 gi|291578877|gb|ADE13334.1| PAS sensor protein [Nitrosococcus halophilus Nc4]
          Length = 492

 Score =  307 bits (787), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 81/506 (16%), Positives = 194/506 (38%), Gaps = 27/506 (5%)

Query: 317 EGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
           + E L+   ++  P    V +  G +   N     +  Y   + I     L  LL     
Sbjct: 3   QIEALSKGLLESTPDAILVVNQEGCIVQINAQTENMFGYSREELIGQK--LEILLPERFR 60

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
             + A             +     L+ ++ +         + +    Q  E M       
Sbjct: 61  DRHQAHCQKFFQTPHFRPMGTGLELYGLRKDGSEFPVEISLSWH---QAKEGMLALSAVR 117

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
           +  + +  ++ ++    +L  ++++    I+ ++        N+A  + FGY   +I  K
Sbjct: 118 DVTERKQAEKALQATEQRLVLLMDSLPVLISYVDAHQRYRIVNKAYEEWFGYSRSEIQGK 177

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--C 553
                L +     +  ++ + L        E++        + +    I           
Sbjct: 178 HLGEVLGEAAYEAIKEHVEKAL-GGQMAIFERVVPYQDAGPRYVEASYIPHLEEQGEVAG 236

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS--DFLARVSHEIRTPLTAIIGFSE-VI 610
           + + ++DI+E KQ + ++   +          +  +  + ++HE++ PLTA+  + E  +
Sbjct: 237 FFVLVNDITERKQIEEQIRQQQLELAHLERLSTAGEMASELAHELKQPLTAVSTYIEACL 296

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
           +  + G +     +E             +I+  L D  +     ++L    + L++ V E
Sbjct: 297 RMLQRGIVSPEHLVETLENAINQNQRADEIIRRLRDFIRSRETHLSL----IDLNKLVRE 352

Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS----GGQII 726
            +SL ++     +  +R   A+++P +  D   ++Q+ LN++ N++           ++ 
Sbjct: 353 TLSLAEIEIRNSQARLRLELADSLPPLSIDPIQIQQVLLNLVRNSLEAMQDTEIGKRELT 412

Query: 727 ISTTHT-SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
           I T+ T  N ++ + V D G G+++  L++  +PF     S      G G+GL + ++++
Sbjct: 413 IQTSLTMENNQIEIAVSDKGAGISSEALKQLFEPFFTTKVS------GMGVGLSICRSII 466

Query: 786 DANMGKFYIFSTPAKGTLIEIIFPLY 811
           +A+ G  +  S   +G       P+ 
Sbjct: 467 EAHGGHIWATSNADQGATFHFTLPIA 492



 Score = 58.1 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 29/243 (11%), Positives = 76/243 (31%), Gaps = 16/243 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147
           +DAH   + +++   +  G    ++ G  L +V      +    H+   L  Q   + + 
Sbjct: 150 VDAHQRYRIVNKAYEEWFGYSRSEIQGKHLGEVLGEAAYEAIKEHVEKALGGQMAIFERV 209

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
             +   G      ++ + +P      E +GF  F +V+            ++   + +HL
Sbjct: 210 VPYQDAGPRY---VEASYIPHLEEQGEVAGF--FVLVNDITERKQIEEQIRQQQLELAHL 264

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
             +        +  +++    +          VS+  E               L+ + E+
Sbjct: 265 ERLSTAGEMASELAHELKQPLTA---------VSTYIEACLRMLQRGIVSPEHLVETLEN 315

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
           ++ + +    I + +            +  +  + +      +     +    L  E  D
Sbjct: 316 AINQNQRADEI-IRRLRDFIRSRETHLSLIDLNKLVRETLSLAEIEIRNSQARLRLELAD 374

Query: 328 KCP 330
             P
Sbjct: 375 SLP 377



 Score = 48.1 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/250 (8%), Positives = 65/250 (26%), Gaps = 16/250 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY---- 144
           ++  G + +I+ +     G    ++IG +L  +      D +        +   +     
Sbjct: 22  VNQEGCIVQINAQTENMFGYSREELIGQKLEILLPERFRDRHQAHCQKFFQTPHFRPMGT 81

Query: 145 GKTTL-WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
           G        +G+    P++++     ++     G      V             +  +++
Sbjct: 82  GLELYGLRKDGS--EFPVEISLSWHQAKE----GMLALSAVRDVTERKQAEKALQATEQR 135

Query: 204 FSHLHEIKKGHSSVEKEKYDI----FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
              L +      S             + +    + R + +   L E           E  
Sbjct: 136 LVLLMDSLPVLISYVDAHQRYRIVNKAYEEWFGYSRSEIQGKHLGEVLGEAAYEAIKEHV 195

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
                 + ++ E+   +  +      +  +        E   +    N  +     +E  
Sbjct: 196 EKALGGQMAIFERVVPYQ-DAGPRYVEASYIPHLEEQGEVAGFFVLVNDITERKQIEEQI 254

Query: 320 NLTPETVDKC 329
                 +   
Sbjct: 255 RQQQLELAHL 264


>gi|71907245|ref|YP_284832.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
 gi|71846866|gb|AAZ46362.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
           RCB]
          Length = 873

 Score =  307 bits (787), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 103/564 (18%), Positives = 192/564 (34%), Gaps = 43/564 (7%)

Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330
                  I  +       F  +   +      +  +              L    V    
Sbjct: 174 APLRGLYIASSYDLFHWSFLVINGVAISLLSEVLRKARSKAEV----NRQLLDTIVSGTS 229

Query: 331 IPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389
              F+    G    AN +          + I        L       D      V++  +
Sbjct: 230 DAVFLKDAQGRYLLANAATAGFVGKAQEEIIGQDDTF--LFPEETARDLMTSDRVIMLAA 287

Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449
             T          ++      +          +     +   GI  E  + +     +  
Sbjct: 288 RNTT-----HEECLRTLDGKEMVFLVTKGPVFDHQGRVVGLFGISREITELKRAMAALVA 342

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE--DILRKPFTVFLEQNTPS 507
               L         G    N      S +  V +++G+      +     + +    +  
Sbjct: 343 SEAALKLAQRQAGIGNWTWNIGTGEHSWSEEVYRIYGHDPRLPPLGYPEVSQYFMPESWR 402

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWK 565
           +++  + + L        +   +        +++R    + P  +      T+ DI+E K
Sbjct: 403 LLSATIEKCLVDGEPYECDVELMSPPATSCWVAVRGEATRRPDGTIIDLHGTIQDITERK 462

Query: 566 QEKNKLSHAKKIAEKESSH------------------KSDFLARVSHEIRTPLTAIIGFS 607
           +   +L   +   E+                      KS FLA +SHEIRTP+  I+G  
Sbjct: 463 RSSKELEQYRHHLEELVESRTTELATARASAEAATRAKSAFLANMSHEIRTPMNGILGMV 522

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
            +++        +P  +E  + I  SG  +L I+ND+LD+SKIE+GK+ L  E   L E 
Sbjct: 523 HLMRR----AGASPAQLEQLDKIASSGTHLLVIINDILDLSKIEAGKLVLEQENFLLSEV 578

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727
           V+ A++++   A  K + +    ++    +  D   + Q  +N L NA+ FT  G  I +
Sbjct: 579 VNTALAVIAGAAAAKGLTVNADVSSIPQALRGDPTRLSQALVNYLGNALKFTERGS-ISL 637

Query: 728 STTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
             +     E    +   V DTG+GMT  +      PF Q  +S   +  GTGLGL + + 
Sbjct: 638 KGSVVEETETDYLLRFEVSDTGIGMTAEQQSHLFIPFAQADSSTTRKFGGTGLGLAINQH 697

Query: 784 MVDANMGKFYIFSTPAKGTLIEII 807
           +     G+  + S P +G+   + 
Sbjct: 698 IAQMMGGEVGVSSIPGQGSSFWLT 721



 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/258 (10%), Positives = 63/258 (24%), Gaps = 25/258 (9%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGM----RLCDVSDILHIDPNNHIGDLLKRQN 141
            +  DA G     +      +G    ++IG        + +    +  +  I   L  +N
Sbjct: 232 VFLKDAQGRYLLANAATAGFVGKAQEEIIGQDDTFLFPEETARDLMTSDRVIM--LAARN 289

Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
           T   +  L  ++G  +   +     P++       G   FGI           A     +
Sbjct: 290 T-THEECLRTLDGKEMVFLVTKG--PVFDHQGRVVGL--FGISREITELKRAMAALVASE 344

Query: 202 KKFSHLHEIKK----------GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD 251
                                G  S  +E Y I+      P L        +++Y+  + 
Sbjct: 345 AALKLAQRQAGIGNWTWNIGTGEHSWSEEVYRIYGHDPRLPPLGYPE----VSQYFMPES 400

Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
             L +        +        +  +               +       +        + 
Sbjct: 401 WRLLSATIEKCLVDGEPYECDVELMSPPATSCWVAVRGEATRRPDGTIIDLHGTIQDITE 460

Query: 312 SAYFDEGENLTPETVDKC 329
                +        +++ 
Sbjct: 461 RKRSSKELEQYRHHLEEL 478


>gi|304309810|ref|YP_003809408.1| Putative two-component sensor histdine kinase [gamma
           proteobacterium HdN1]
 gi|301795543|emb|CBL43741.1| Putative two-component sensor histdine kinase [gamma
           proteobacterium HdN1]
          Length = 816

 Score =  307 bits (787), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 82/264 (31%), Positives = 139/264 (52%), Gaps = 13/264 (4%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I++ ++++ +   A + A+ ES  KS FLA++SHEIRTP+  +IG +++++  +     +
Sbjct: 394 INDLRKQQVQSLLAAREAQTESRAKSQFLAQMSHEIRTPMNGVIGMADLLRQTKL----D 449

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
            +  +Y + I  SG  +L I+ND+LD SKI +GKM+L   P+   + V E I L  L A 
Sbjct: 450 VQQKQYLDIIVNSGRTLLTIINDILDFSKIAAGKMDLEIRPIDFKQIVRECIQLFTLPAE 509

Query: 681 EKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT---HTSNEE 736
           EK I ++  +     P I  D   ++Q+  N+LSNA+ FT  GG I +        S   
Sbjct: 510 EKAIYLKKDWKEGASPIIYGDSTRLRQVLTNLLSNALKFTEKGG-ITLRVKPCLRDSEPY 568

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           + + V DTG+G++    ++    F Q   S   R  GTGLGL ++K +V+   G+  + S
Sbjct: 569 LQVEVEDTGIGISVENQQRLFSAFSQAEASTTRRFGGTGLGLAISKQLVELMGGEIGVRS 628

Query: 797 TPAKGTLIEIIFPLYDTSHPHDCI 820
               G++          + P + +
Sbjct: 629 EEGVGSIFWFTL----RAQPGEAL 648


>gi|161936330|ref|YP_128770.2| aerobic respiration control sensor protein ArcB [Photobacterium
           profundum SS9]
          Length = 798

 Score =  307 bits (787), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 88/394 (22%), Positives = 168/394 (42%), Gaps = 19/394 (4%)

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
           +  + +E E       + ++  +   L S L+A+ D I   N +G     NRA+++L G 
Sbjct: 131 IAMHDLENEVYQRENAQLELAEQSALLKSFLDASPDLIYYRNEKGEFSGCNRAMAELTGK 190

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
             + ++         +     +     ++   ++  T E+        + +  LR +   
Sbjct: 191 TEKGLVGLTPWDVYSEEAAIKIVETDEQVFQKNVSLTYEQWLEYPDGRKAVFELRKVPFY 250

Query: 548 LPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
                         DI+E KQ        +   EK S  K+ F++ +SHE+RTPL  I+G
Sbjct: 251 RRDGRRLGLMGFGRDITERKQ-------YQDAQEKASRDKTAFISTISHELRTPLNGIVG 303

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
            S ++         N     Y   +  S   + +I ND++D+ K +  ++ L  +P+  +
Sbjct: 304 LSRMLLETPL----NDEQRGYMRTVHVSAITLGNIFNDIIDMDKSDRRRLELMPKPLDFN 359

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ 724
           E V+E  ++  L A +K +         +P  I  D   ++Q+  N++ NA  FT  GG 
Sbjct: 360 EFVTEMENISSLMAEQKGLRFDLERLTKLPAFIEVDSTRLRQVLWNLIGNATKFTKEGGV 419

Query: 725 I-IISTTH-TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP-NSQQIRGEGTGLGLPLA 781
           I  +S+       E+   V D+G+G+   E++K    + Q+   S  +   GTG+GL ++
Sbjct: 420 ILSVSSEIFEHEAEITFDVEDSGIGIPASEVDKIFTMYYQVKQGSDNLHAVGTGIGLAVS 479

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIF--PLYDT 813
           + +V    G   + S   +G+   +    PL + 
Sbjct: 480 RQLVQLMGGNILVTSDIGEGSTFTVTIRVPLVEA 513



 Score = 46.9 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/126 (13%), Positives = 38/126 (30%), Gaps = 5/126 (3%)

Query: 93  GYLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151
           G     +  + +  G     ++G+   DV S+   I        + ++  +   +  L  
Sbjct: 175 GEFSGCNRAMAELTGKTEKGLVGLTPWDVYSEEAAIKIVETDEQVFQKNVSLTYEQWLEY 234

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
            +G       +L  +P Y R+    G  GFG           +   ++  +  +      
Sbjct: 235 PDGRKAVF--ELRKVPFYRRDGRRLGLMGFG--RDITERKQYQDAQEKASRDKTAFISTI 290

Query: 212 KGHSSV 217
                 
Sbjct: 291 SHELRT 296


>gi|11499078|ref|NP_070312.1| signal-transducing histidine kinase [Archaeoglobus fulgidus DSM
           4304]
 gi|2649082|gb|AAB89763.1| signal-transducing histidine kinase [Archaeoglobus fulgidus DSM
           4304]
          Length = 908

 Score =  307 bits (787), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 85/634 (13%), Positives = 205/634 (32%), Gaps = 42/634 (6%)

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
            +   + +  +        +E   I  +        +      +       +   +  + 
Sbjct: 289 FENGRARVVAVTDKKMPGFREGEMIAGEDVAKVMQTLSQGKPWVKRVEGRGEGERRLMEL 348

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH-PSLSAYFDEG 318
            + +     +       +IN+    +  +         E    ++       +    +E 
Sbjct: 349 GIKSYALIPIVSDSLLGSINVPSEEEDAFDEETIQILMEVAHSVALAIRSARMREELEES 408

Query: 319 ENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
           E    +  +   +   +   G   Y N  F  +  Y+  + I  +         P   D 
Sbjct: 409 EEKFRKLAEHSQVGIDIIQEGVFVYVNEKFAEILGYEREELIGKSPVD---FIHPD--DR 463

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
              +     R        + RL  +  + E  +   +         P      G+  +  
Sbjct: 464 EKFERNYRARILGEKNHVNYRLRVLTKSGEVRIIDAYGSRVILRGKP---AIVGVSVDIT 520

Query: 439 DTRINKRKME------------------IEVMQLCSILEATSDGIAIINREGIILSTNRA 480
           +    ++++E                      +   ++E+        +  G+    N  
Sbjct: 521 EREKMRQELEKYTQELEKLVEERTKQLAESEKRYRLLVESPIVAFWEADSNGVFRFVNDR 580

Query: 481 VSKLFGYPVEDILRK-PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
           + ++ GY  ++++ K      +       +   +       L   +        K+    
Sbjct: 581 LLEMSGYSRDEVVGKMTMFDPIAPEQREWLAERIRLHKEHKLYGDV-VEAELVKKDGSRF 639

Query: 540 SLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
            + +    +             M DI++ K  + KL    +   K +     ++  +SH+
Sbjct: 640 HVLVSPAPIYDEKGNLVRIVGAMIDITDRKMAEEKLKQTLEELRKANEELEAYVHAISHD 699

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           +R PL  + G+   +    +G         Y + +      +  ++NDLL+ +++   K 
Sbjct: 700 LRAPLRNLQGYVSALVED-YGEKLEEDARFYLSRLKALTEKMDGLINDLLEYARV--SKA 756

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715
                 V L+  V + +  ++     K  +I       +P +  D + +  + LN++SNA
Sbjct: 757 KAEVRRVDLNLIVEDVLDYLKDEIRGKSAVIEIE---KLPAVKGDRKLLFTVMLNLISNA 813

Query: 716 IHFTPSGGQIIISTTHTS-NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           I F   G +  +       N +V + V+D G+G+     EK    F ++    +    GT
Sbjct: 814 IKFVEEGVRPEVKVWAEDVNGKVRVYVKDNGIGIPEEYHEKIFNIFERLHG--EEVYPGT 871

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           G+GL + K  ++   G++ + S P +G++  I  
Sbjct: 872 GVGLAIVKKAMEVMGGRYGVRSKPGEGSIFWIEL 905



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 25/227 (11%), Positives = 60/227 (26%), Gaps = 14/227 (6%)

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
              L+           +   +    R  +                     +         
Sbjct: 36  FDLLIIDGVTLKRKWREIERIKAESRAFLPVLLVTTRKDLKIAEKHLWKRVDELIIEPVD 95

Query: 426 ENMPQNGIEPEDVDTRIN---KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
           +      IE      +     +    I  ++L ++ E  +  I +I+ E  IL  NR   
Sbjct: 96  KLELLARIEILLRARKQALQLEEHARIMEIELGTLFETIAHPIVVISPEFEILHANRYAQ 155

Query: 483 KLFGYPVED-ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
           K+F     +  + K              N            +T E          ++ ++
Sbjct: 156 KIFREQGIENAIGKKCYKVFHGREEPAENCPCVATFRNHKPETREIEIF-----GRMYAV 210

Query: 542 RIIIKKLPFSSCYSLTMH-DISEWKQEKNKLSHAKKIAEKESSHKSD 587
                 +       + +  DI+++K+ + +L    +   K +    +
Sbjct: 211 STTPIFIDGELRKVVHLAFDITDFKRMERRL----ERLYKANLLLHE 253



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 67/194 (34%), Gaps = 11/194 (5%)

Query: 68  LDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI 127
            +SE  +        V F W  D++G  + +++ L +  G    +++G     + D +  
Sbjct: 548 AESEKRYRLLVESPIVAF-WEADSNGVFRFVNDRLLEMSGYSRDEVVGK--MTMFDPIAP 604

Query: 128 DPNNHIGD--LLKRQNTWYGKTT---LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFG 182
           +    + +   L +++  YG      L   +G+  +V +  +  PIY          G  
Sbjct: 605 EQREWLAERIRLHKEHKLYGDVVEAELVKKDGSRFHVLV--SPAPIYDEKGNLVRIVG-A 661

Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS 242
           ++ +         L + L++      E++    ++  +               +++    
Sbjct: 662 MIDITDRKMAEEKLKQTLEELRKANEELEAYVHAISHDLRAPLRNLQGYVSALVEDYGEK 721

Query: 243 LTEYYAHKDDVLKT 256
           L E        LK 
Sbjct: 722 LEEDARFYLSRLKA 735



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/375 (9%), Positives = 95/375 (25%), Gaps = 31/375 (8%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNTWYGKTTL 149
            G    ++E+  + +G    ++IG    D       +         +L  +N    +  +
Sbjct: 428 EGVFVYVNEKFAEILGYEREELIGKSPVDFIHPDDREKFERNYRARILGEKNHVNYRLRV 487

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
               G    +    + + +  +     G      V +   +   + L K   +    + E
Sbjct: 488 LTKSGEVRIIDAYGSRVILRGKP-AIVGVS----VDITEREKMRQELEKYTQELEKLVEE 542

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
             K  +  EK    +             N V         +      ++     +    +
Sbjct: 543 RTKQLAESEKRYRLLVESPIVAFWEADSNGVFRFVNDRLLEMSGYSRDEVVGKMTMFDPI 602

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
             ++        +  K+         ++   +  S  +     A   + +      V   
Sbjct: 603 APEQREWLAERIRLHKEHKLYGDVVEAELVKKDGSRFHVLVSPAPIYDEKGNLVRIVGAM 662

Query: 330 PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389
                      +   +         ++++++  A             D  A     L   
Sbjct: 663 -----------IDITDRKMAEEKLKQTLEELRKANEELEAYVHAISHDLRAP----LRNL 707

Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD-TRINKRKME 448
                A                        +          +G+  + ++  R++K K E
Sbjct: 708 QGYVSALVEDYGEKLEEDARFYLSRLKALTEK--------MDGLINDLLEYARVSKAKAE 759

Query: 449 IEVMQLCSILEATSD 463
           +  + L  I+E   D
Sbjct: 760 VRRVDLNLIVEDVLD 774


>gi|237667737|ref|ZP_04527721.1| sensor histidine kinase [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|237656085|gb|EEP53641.1| sensor histidine kinase [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 562

 Score =  307 bits (787), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 81/386 (20%), Positives = 166/386 (43%), Gaps = 38/386 (9%)

Query: 430 QNGIEPEDVDTRINKRKMEIEV-----MQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
           + GI  +  +   ++ +++I+       +L SI  +   G+  ++ E  ++S N A   L
Sbjct: 207 ELGILGDSFNHMADELQLKIQEVVNNQTKLESIFNSMDSGVVAVDNENNVISINPAAELL 266

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
            G     +  K      +      +     E   + +   +E+       E         
Sbjct: 267 LGIKKSIVGEKLTDYVSDHEINGFLMDSEEEDKEITILHPIERNIKIKKSE--------- 317

Query: 545 IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
           +     +    ++  DI++ K+ +                +S F+A VSHE++TPLT+I 
Sbjct: 318 MIDKKINLGKVISFQDITDMKRVE--------------LMRSQFVANVSHELKTPLTSIK 363

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           GF+E ++        +    ++ + ID+    +  ++ND+L +S IES  +    E    
Sbjct: 364 GFAETLR----IVDDSATREKFLDIIDKEAERLTRLINDILVLSNIESN-LVADVEEFRP 418

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT-PSGG 723
              + E +++V+  A  + + +     N+   IL D     Q+ LN++ NA+ ++    G
Sbjct: 419 GIVIEETLNIVRKTARNRNVSVEFE-DNSSECILGDRDKFYQLVLNLIENAVKYSKEKEG 477

Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
            + IS +H       L++ D G+G+ + ++ +  + F ++  S   +  GTGLGL + K 
Sbjct: 478 YVKIS-SHNDGGYYHLKIEDNGIGIPDEDISRIFERFYRVDKS--RKKGGTGLGLAIVKH 534

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFP 809
           +V    G+  + S   +GT  E+  P
Sbjct: 535 IVKIFNGEINVKSKLGEGTTFEVKIP 560


>gi|182418974|ref|ZP_02950230.1| sensory box histidine kinase [Clostridium butyricum 5521]
 gi|182377257|gb|EDT74825.1| sensory box histidine kinase [Clostridium butyricum 5521]
          Length = 572

 Score =  307 bits (787), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 81/386 (20%), Positives = 166/386 (43%), Gaps = 38/386 (9%)

Query: 430 QNGIEPEDVDTRINKRKMEIEV-----MQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
           + GI  +  +   ++ +++I+       +L SI  +   G+  ++ E  ++S N A   L
Sbjct: 217 ELGILGDSFNHMADELQLKIQEVVNNQTKLESIFNSMDSGVVAVDNENNVISINPAAELL 276

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
            G     +  K      +      +     E   + +   +E+       E         
Sbjct: 277 LGIKKSIVGEKLTDYVSDHEINGFLMDSEEEDKEITILHPIERNIKIKKSE--------- 327

Query: 545 IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
           +     +    ++  DI++ K+ +                +S F+A VSHE++TPLT+I 
Sbjct: 328 MIDKKINLGKVISFQDITDMKRVE--------------LMRSQFVANVSHELKTPLTSIK 373

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           GF+E ++        +    ++ + ID+    +  ++ND+L +S IES  +    E    
Sbjct: 374 GFAETLR----IVDDSATREKFLDIIDKEAERLTRLINDILVLSNIESN-LVADVEEFRP 428

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT-PSGG 723
              + E +++V+  A  + + +     N+   IL D     Q+ LN++ NA+ ++    G
Sbjct: 429 GIVIEETLNIVRKTARNRNVSVEFE-DNSSECILGDRDKFYQLVLNLIENAVKYSKEKEG 487

Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
            + IS +H       L++ D G+G+ + ++ +  + F ++  S   +  GTGLGL + K 
Sbjct: 488 YVKIS-SHNDGGYYHLKIEDNGIGIPDEDISRIFERFYRVDKS--RKKGGTGLGLAIVKH 544

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFP 809
           +V    G+  + S   +GT  E+  P
Sbjct: 545 IVKIFNGEINVKSKLGEGTTFEVKIP 570


>gi|27366394|ref|NP_761922.1| signal transduction histidine kinase [Vibrio vulnificus CMCP6]
 gi|27362595|gb|AAO11449.1| Signal transduction histidine kinase [Vibrio vulnificus CMCP6]
          Length = 718

 Score =  307 bits (787), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 93/490 (18%), Positives = 194/490 (39%), Gaps = 32/490 (6%)

Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
           +L +T+   ++          L   P +                     SA+   +    
Sbjct: 15  WLSITQEGWIEAYNQQAQSCELWHQPLMVGEALTCVHPSRIFYEWVKQLSAQSPPLSIMS 74

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
             +   T     +     +   Q  +  + +  R    ++  ++ +L    +  + GI  
Sbjct: 75  TRATHWTLSASPRTQGGFDLWLQEAVCDDAL--RDENTRLRRDIERLDFAAQGANLGIWD 132

Query: 468 INREGIILSTNRAVSKLFGYPVEDILR------------KPFTVFLEQNTPSVMNHYLTE 515
            N     +  N+  +         +              + ++  +  +  +     +  
Sbjct: 133 FNPSTGCIFGNKTWATQKKLEPNHLFADDALFSEIINGIEKWSEIVHPDDVAETTDKIQA 192

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLS-LRIIIKKLPFSSCYSL----TMHDISEWKQEKNK 570
            L     +           + +    L +            +       DI + K+ +  
Sbjct: 193 HL-DGETELYHAEFRVRCGDGQWKWILDLGRVFERDQDGVPVRMNGIHVDIDKLKRLQQS 251

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           LS  K  AE  +  KS FLA +SHE+RTPL A++G+++++   +       ++ EY   I
Sbjct: 252 LSETKDKAEVANRAKSIFLANMSHELRTPLNAVLGYTQLM---KCDQRLTAKHHEYLEII 308

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
           +RSG  +L ++ND+LD+SKI++G   +  +  +  E   E   L+Q+ A +K++ +    
Sbjct: 309 NRSGEHLLSLINDVLDMSKIDAGHSVVERKWFNFREVSEEINDLMQMKAMQKQLTLHCRV 368

Query: 691 ANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS----NEEVILRVRDTG 745
            +++P  +L D+   +Q+ +N+L NAI FT  G  + ++    +      +V   V D+G
Sbjct: 369 EDSVPHFVLGDVVKTRQVLINLLGNAIKFTYRG-NVRLNIASEALQNGQHKVTFEVSDSG 427

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G++    E+  +PF Q+ +       GTGLGL ++K  V+   G+  + S   +G+   
Sbjct: 428 IGISEENQERVFQPFEQLDSDITQN--GTGLGLSISKQFVELMGGQLVLKSELHRGSTFS 485

Query: 806 IIFPLYDTSH 815
               + +TS 
Sbjct: 486 FSL-VMETSE 494


>gi|83855337|ref|ZP_00948867.1| sensor histidine kinase/response regulator [Sulfitobacter sp.
           NAS-14.1]
 gi|83843180|gb|EAP82347.1| sensor histidine kinase/response regulator [Sulfitobacter sp.
           NAS-14.1]
          Length = 713

 Score =  307 bits (787), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 101/459 (22%), Positives = 192/459 (41%), Gaps = 25/459 (5%)

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHT-IQWNRENSLAMTFIPFEKANQFPENMPQNG 432
           K +D  A +       +       A L    +   +++  ++    E   +      +N 
Sbjct: 2   KPADQLAHEQRRRAEVEALLEQTQAELCAAYRKLDDHAQNVSVEISETRAEVENIRGENK 61

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
                 D    + ++E+   +L   +E   DG A  N++  ++  NR+   +F       
Sbjct: 62  RVM--SDLCAAREQIELTQRRLWHSVETIHDGFAFFNKDNEMIMANRSYLAVFDDIDAIR 119

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK-------ITLGSTKEEKLLSLRIII 545
               ++  L   T   + +           + L +         +        + +   +
Sbjct: 120 PGVSYSTILRVLTDEGIVNIGRRTPEEWRAKMLLRSQQKAPAPIIIKLWNGAYIKI---V 176

Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
            +            DI+E  + + KL  A+  AE  +S KS FLA++SHEIRTP+  I+G
Sbjct: 177 DQRGKGGDIVSLARDITETVEYQRKLVDARATAEAANSAKSLFLAKMSHEIRTPMNGIVG 236

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
            +EV+ +             Y + I  S   +L I+ND+LD S+IE+ ++++H  P  L+
Sbjct: 237 MTEVLGDTAL----TQDQRLYVDTIKTSAEALLVIINDVLDFSRIEANRLSIHPAPFDLE 292

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ 724
               E + L+Q  A +K + +   +   +PR ++ D   ++Q+  N++ NA+ FT +G  
Sbjct: 293 RVFQEVLLLLQPLAVQKGLDLALDYDLFLPRKLVGDAGRIRQVLTNLVGNAVKFTQNGHI 352

Query: 725 IIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
           +I +T           + + + DTG+G+    +E  M  F Q  +      EGTGLGL +
Sbjct: 353 LIRATGLPDAGAGNVLIKISIEDTGIGIAPDMIEHIMGEFTQASSDPSPNAEGTGLGLAI 412

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPL---YDTSHP 816
            + +V    G+ ++ S    G+      PL    D++ P
Sbjct: 413 CQRLVQLMGGEIWVTSEHGVGSCFGFELPLKAQEDSAAP 451


>gi|120601171|ref|YP_965571.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4]
 gi|120561400|gb|ABM27144.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4]
          Length = 839

 Score =  307 bits (787), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 111/654 (16%), Positives = 234/654 (35%), Gaps = 37/654 (5%)

Query: 180 GFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRM 236
           G  IV + R+     A     D     +         V+                  +R 
Sbjct: 32  GVCIVLIARLRRQVGAARHEND-LLKAMRIASPVPLCVKDVHGRYLGCNHAFELLFGVRE 90

Query: 237 KNKVSSLTEYY-AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN 295
            + +               ++     +    +S       +          Q       +
Sbjct: 91  ADILGGTAAVELPQPLAAGESAAEENMARFGTSRQTFMSAYESPGGPALVLQVDCATWRD 150

Query: 296 S-----KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFL 349
           +      +   Y          A   E E      V++ PI    +   G++ + N   L
Sbjct: 151 ASGVHKGQVNAYADITPLKRAEAALHESEARNRMLVEEAPISIMSFDAAGHITFVNKWHL 210

Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
            +     VD          L   P L+     + V                       + 
Sbjct: 211 RVFCRHRVDA--GFFIGRRLDALPGLARAGLCERVARVLHGEELAIREVYFPEFTGGHDG 268

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469
             ++  +P     +  + +    I  +  + +  +  +      + S+L          +
Sbjct: 269 WASIRGVPIH---RDGQIVGGILIREDITERKRMEEVLRQREALVSSMLRNLPIDFWAAD 325

Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
            EG +L  +    +++G+    +     +    +N+                 +T+E+  
Sbjct: 326 GEGRMLMQSDESVRVWGHLPSGVEPLTGSPLQWRNSDRFEPRVFAG-------ETVEREI 378

Query: 530 LGSTKEEKLLSLRIIIKKLPFSSCYSLTMH---DISEWKQEKNKLSHAKKIAEKESSHKS 586
             +    ++ +  +I   +      +  +    D++E K+   +L  A+  AE  +  KS
Sbjct: 379 DVALPSGQMRTFNVIAAPVRLQGGITAMLRVNLDVTERKRVLAELRTARDAAEAANKAKS 438

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
           +FLA +SHE+RTPL  ++G  + + ++       P+   + +    S   +L I++D+LD
Sbjct: 439 EFLAHMSHELRTPLNGVMGMLQ-LLDEHVAA---PQGRAWLDVALESSRALLRILSDILD 494

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVK 705
           +S+IE+G+++L  EP + +  ++  +  +      + + I     +++P +L  D   ++
Sbjct: 495 LSRIEAGRLDLMQEPFTPESVLAPVLVSLHRTVEGRAVRIVNEMDDSMPPVLVGDPGRIR 554

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDTGVGMTNYELEKAMKPFG 761
           Q+ LN+L NA  +T  G ++ +             V L V DTGVG+ + +L++A++PFG
Sbjct: 555 QVLLNLLGNAAKYTERG-EVRVGMRVLRRNGKALRVHLHVTDTGVGIADEQLQRALEPFG 613

Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
           ++         G GLGLP+   +V    G   I S    GT + +  PL + + 
Sbjct: 614 RLRQG-SGLPRGVGLGLPIVVRLVRLMGGTLCIASEQGVGTEVHVTLPLLEANA 666



 Score = 70.8 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/398 (7%), Positives = 85/398 (21%), Gaps = 18/398 (4%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D HG     +       G     ++G               +   + + R  T       
Sbjct: 70  DVHGRYLGCNHAFELLFGVREADILGGTAAVELPQPLAAGESAAEENMARFGTSRQTFMS 129

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
                    + + +        +                      A     + +   L E
Sbjct: 130 AYESPGGPALVLQVDCATWRDASG--VHKGQVNAYADITPLKRAEAALHESEARNRMLVE 187

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS-------SLTEYYAHKDDVLKTEKYPLL 262
                         I         +  +++V         L          L      +L
Sbjct: 188 EAPISIMSFDAAGHITFVNKWHLRVFCRHRVDAGFFIGRRLDALPGLARAGLCERVARVL 247

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL---SHRNHPSLSAYFDEGE 319
             EE ++ E         +          +  + +     L          +     + E
Sbjct: 248 HGEELAIREVYFPEFTGGHDGWASIRGVPIHRDGQIVGGILIREDITERKRMEEVLRQRE 307

Query: 320 NLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKY--KSVDDIEIAGGLST---LLDAP 373
            L    +   PI F+     G +   +   + +  +    V+ +  +          +  
Sbjct: 308 ALVSSMLRNLPIDFWAADGEGRMLMQSDESVRVWGHLPSGVEPLTGSPLQWRNSDRFEPR 367

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
             +     + + +          +     ++     +  +         +      +   
Sbjct: 368 VFAGETVEREIDVALPSGQMRTFNVIAAPVRLQGGITAMLRVNLDVTERKRVLAELRTAR 427

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471
           +  +   +     +     +L + L      + +++  
Sbjct: 428 DAAEAANKAKSEFLAHMSHELRTPLNGVMGMLQLLDEH 465



 Score = 39.2 bits (90), Expect = 3.0,   Method: Composition-based stats.
 Identities = 34/264 (12%), Positives = 70/264 (26%), Gaps = 24/264 (9%)

Query: 81  RTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ 140
             + F W  D  G +   S+E  +  G+      G+     S +   + +     +   +
Sbjct: 317 LPIDF-WAADGEGRMLMQSDESVRVWGHLPS---GVEPLTGSPLQWRNSDRFEPRVFAGE 372

Query: 141 NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
                     P   +      ++ A P+          +G GI  + RV+ D     + L
Sbjct: 373 TVEREIDVALP---SGQMRTFNVIAAPVR--------LQG-GITAMLRVNLDVTERKRVL 420

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
            +  +     +  + +  +    +  +   P +  M           A +          
Sbjct: 421 AELRTARDAAEAANKAKSEFLAHMSHELRTPLNGVMGMLQLLDEHVAAPQGRAWLDVALE 480

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
              +    L +  D   I   +    Q   T ++        L                 
Sbjct: 481 SSRALLRILSDILDLSRIEAGRLDLMQEPFTPESVLAPVLVSLHRTVEGRA-------VR 533

Query: 321 LTPETVDKCPIPFFVYSHGNLFYA 344
           +  E  D  P P  V   G +   
Sbjct: 534 IVNEMDDSMP-PVLVGDPGRIRQV 556


>gi|28868689|ref|NP_791308.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|28851928|gb|AAO55003.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 1213

 Score =  307 bits (787), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 95/472 (20%), Positives = 181/472 (38%), Gaps = 14/472 (2%)

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411
                   I+    L  +L+        A    +  +   + +          W R    
Sbjct: 486 WSPDRFSVIKTQPELLGILNKALEEFPVAELRSIRLKWLGSSLP-----QPSLWGRIPRW 540

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471
               +              + ++ +       +R++  ++    ++L+   + I + + +
Sbjct: 541 VFWVVALALLTGLVSLAWSSRLKVQIRQRLKAERQLNDQLAFKHALLDGIPNPIYVRDLK 600

Query: 472 GIILSTNRAVSKLFGYPVEDILRKPF--TVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
           G ++S NR+  +  G   E +  +       + +     M+     +L        ++  
Sbjct: 601 GRLISCNRSYEQSLGVSFEQMNGRRLLDVEVIPRPLAEQMHADYLALLENHQPVFSDRTI 660

Query: 530 LGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
             S K   +    +                 DI+E K  + +L  A ++A + +  KS F
Sbjct: 661 ELSGKRMNVWQWTVPFFAADGQLQGLLGGWIDITERKLLEQQLEQAVRLAAQANEAKSVF 720

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
           LA +SHEIRTP+ AIIG  E+   Q       P          RS   ++ ++ + LD++
Sbjct: 721 LASMSHEIRTPMGAIIGLLELECEQALRRGEEPTQG--LQVAHRSATELVALIGESLDLA 778

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQI 707
           +IE+G M L      L       ++L    A EK + +R   A         D   ++Q+
Sbjct: 779 RIEAGGMQLSLVVTPLQTFFEGVLALFSAQAREKGLELRLELAEQARGDYWLDPLRLRQV 838

Query: 708 ALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764
             N+L NA+ FT  G    ++ +S        V + + D+GVG+     ++  +PF Q  
Sbjct: 839 VHNVLGNALKFTRQGAVVVKVEVSDDPPDASRVRIGIMDSGVGIEPARQQQIFQPFTQAA 898

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           +    R  G+GLGL + + +V+   G   + S P KGT + +  PL   + P
Sbjct: 899 DDTAARYGGSGLGLSITRQLVELMKGDISLHSEPGKGTRVTVDVPLARVTEP 950



 Score = 43.9 bits (102), Expect = 0.10,   Method: Composition-based stats.
 Identities = 49/377 (12%), Positives = 99/377 (26%), Gaps = 10/377 (2%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D  G L   +    +++G    +M G RL DV  I          D L          + 
Sbjct: 598 DLKGRLISCNRSYEQSLGVSFEQMNGRRLLDVEVIPRPLAEQMHADYLALLENHQPVFSD 657

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
             IE +   + +    +P ++ + +  G  G  I              ++  +  +  +E
Sbjct: 658 RTIELSGKRMNVWQWTVPFFAADGQLQGLLGGWI--DITERKLLEQQLEQAVRLAAQANE 715

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
            K    +    +                 +     E       V       L+     SL
Sbjct: 716 AKSVFLASMSHEIRTPMGAIIGLLELECEQALRRGEEPTQGLQVAHRSATELVALIGESL 775

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET--VD 327
               D   I             LQ   +      S +          E          +D
Sbjct: 776 ----DLARIEAGGMQLSLVVTPLQTFFEGVLALFSAQAREKGLELRLELAEQARGDYWLD 831

Query: 328 KCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
              +   V++  GN         ++ K +  DD   A  +   +    +    A +  + 
Sbjct: 832 PLRLRQVVHNVLGNALKFTRQGAVVVKVEVSDDPPDASRVRIGIMDSGVGIEPARQQQIF 891

Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
               +     +AR          +  +  +     +   E      +  +    R+ +  
Sbjct: 892 QPFTQAADDTAARYGGSGLGLSITRQLVELMKGDISLHSEPGKGTRVTVDVPLARVTEPV 951

Query: 447 MEIEVMQLCSILEATSD 463
           +      L + L+A  D
Sbjct: 952 LPSAEA-LDATLDALPD 967


>gi|150017918|ref|YP_001310172.1| PAS/PAC sensor hybrid histidine kinase [Clostridium beijerinckii
           NCIMB 8052]
 gi|149904383|gb|ABR35216.1| PAS/PAC sensor hybrid histidine kinase [Clostridium beijerinckii
           NCIMB 8052]
          Length = 1024

 Score =  307 bits (787), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 141/756 (18%), Positives = 266/756 (35%), Gaps = 50/756 (6%)

Query: 91  AHGYLKEISEELPKTIGNY---AFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQNTWYGK 146
               L + +E+    +          IG  + +++     D        ++K   T Y K
Sbjct: 128 PDLTLLKANEKYIYYMDEPFNRKENCIGKSIEEIAKDFKEDKIREKWISVIKTGKTGYVK 187

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI-----VHVNRVDNDPRALGKRLD 201
             +    GT      D A +PIY  + +   +    I     +    V     A  +R D
Sbjct: 188 DFMSDRHGTGA-TYFDSAIVPIY-EDGKVKYYIENRIDVTDRIRNKMVIKAQAAEIERRD 245

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQ----SPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257
           KK   + ++     S+  +   +              ++ N      E      +  K E
Sbjct: 246 KKIEAIMDLADEQISIFDKSGRLIKISKVILELFQANKISNINDIKDEIIIFDVNKNKIE 305

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYF---GTLQNNSKESFEYLSHRNHPSLSAY 314
                 S      E  ++  I   +  +K        + +       Y+   +  +    
Sbjct: 306 FEESKFSYIEKGKEINNYRVIIGTRNLEKHVVISGKPIFDRKGNFERYVLIIDDITEKVQ 365

Query: 315 F---DEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
               +E +N     +       F +   GN+   N S         + +      L    
Sbjct: 366 AKIIEEQKNKLEAIIRNMSEGLFTIDKEGNINILNSSAKDFFYNIDLANKISENFLKVKF 425

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
                +                 I    R+   +                 ++  + +  
Sbjct: 426 YDSNDNIIKPENLPSYRVLKGEKIN-EYRMTLKRK--GLEYHFNVSGSPLYDEDGDIVKA 482

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG--YP 488
                   +   +   ++++  QL +++E  SD I I ++EG I+  N     L    Y 
Sbjct: 483 LLCTRNVTEQVNSNTIIKMQKKQLEAVIENISDAIYIADKEGKIILMNAEGRGLLSDYYA 542

Query: 489 VEDILRKPFT-VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
           V++      T    + +   +    L+   +L   +   +  +    + K L++R+    
Sbjct: 543 VKNADDFNITKQAFDTSGNEIHVENLSLKCALRGEKIKNRTIIIKRSD-KELTIRVNSTP 601

Query: 548 LPFSSC----YSLTMHDISEWKQEK-------NKLSHAKKIAEKESSHKSDFLARVSHEI 596
           +  +S          HDI++  +++        +L   K+ AE  +  KS FL  +SHEI
Sbjct: 602 IYDTSGNLIMALACYHDITDLAEKEKIIVEKYRQLEVLKEEAEIANKIKSLFLDNMSHEI 661

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTP+  I G  ++++        +    +Y   +  SGN +L I+N++LDISKIE+G   
Sbjct: 662 RTPMNGIFGTIQLLEKTPM----SEEQSKYITLLKNSGNKLLTIINNILDISKIEAGIHK 717

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNA 715
           L+    +L +   +  + +    N K + IR  F  N   I + D   +KQI  N++SNA
Sbjct: 718 LNDGKFALKKITDDIYTNLLESGNSKGLEIRYYFDPNAEFIAIGDELKLKQILDNLISNA 777

Query: 716 IHFTPSGGQI--IISTTHTSNEEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           + FT  G  I   ++   + N+ V +   + DTG+G+      K    F Q   S   + 
Sbjct: 778 VKFTEKG-YISFRVTKVSSDNDYVKIKFTIADTGIGIDERFKSKIFGIFSQGDISVNKKY 836

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
            GTGLGL ++K +     G     ST  +G+     
Sbjct: 837 TGTGLGLSISKQLAMMMNGNISFESTLGEGSTFTFT 872


>gi|221197027|ref|ZP_03570074.1| signal transduction histidine kinase [Burkholderia multivorans
           CGD2M]
 gi|221203699|ref|ZP_03576717.1| signal transduction histidine kinase [Burkholderia multivorans
           CGD2]
 gi|221175865|gb|EEE08294.1| signal transduction histidine kinase [Burkholderia multivorans
           CGD2]
 gi|221183581|gb|EEE15981.1| signal transduction histidine kinase [Burkholderia multivorans
           CGD2M]
          Length = 549

 Score =  307 bits (787), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 90/385 (23%), Positives = 170/385 (44%), Gaps = 11/385 (2%)

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
           + +    +++     L +++E     + +++R+  +   +     LFG P + +  +P  
Sbjct: 35  ELKSRNEQLDRVNDDLSNLVEGIPLPVVVLDRQLRLRHFSPQAQALFGLPDDSV-GQPLA 93

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSL 556
                 +       L  ++   ++   +        E +   + +   +          L
Sbjct: 94  QLNSLFSAVD----LERVVQSAVQGLADVEHEYQDSEGRWWLVNVRAYRTADDRIDGAVL 149

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK--NQR 614
              DI + K        A+  AE+ ++ K +FLA VSHE+R PL  I  ++ V+   ++R
Sbjct: 150 AFQDIHQLKSALGTAQSAQLDAERANTAKDNFLALVSHELRAPLNVISSWAAVLMTASER 209

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
             P            I R   L  ++++DLLD+S+I SG+ +L  +PV    AV   +  
Sbjct: 210 GMPTDEQMSQRAVTTILRHCQLQAELIDDLLDVSRISSGRFSLDSKPVDFAAAVRTVVES 269

Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
            +  A +K I++ TS   +   +  D R ++Q+A N++ NA+ FTP GG++ ++ T    
Sbjct: 270 HRPVAAKKDIMLATSGLQSQAVVSGDARRLQQVASNLIGNALKFTPQGGRVEVALT-RLG 328

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
             + L V D G+G+    L +    F Q   S+  +  G GLGL + K +V A+ G    
Sbjct: 329 ALIELSVADNGIGVKPELLPRLFDRFMQSDTSRTRQYGGLGLGLSIVKHLVTAHGGTVTA 388

Query: 795 FST-PAKGTLIEIIFPLYDTSHPHD 818
            S    +GT + +  PL  T+   +
Sbjct: 389 SSEGEGRGTRLTVRIPLLQTAATEE 413



 Score = 40.0 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 38/444 (8%), Positives = 109/444 (24%), Gaps = 35/444 (7%)

Query: 39  SKKENPCHDSFEQSNFTDQNQESVSNTNYLD-SENTFVFDPIPRTVRFTWNIDAHGYLKE 97
           +K+E    +          N E  S    LD   +          +     +D    L+ 
Sbjct: 18  AKQELESANQE----LASLNDELKSRNEQLDRVNDDLSNLVEGIPLPVV-VLDRQLRLRH 72

Query: 98  ISEELPKTIGNYAFKMIGMRLCDVSDILHI-DPNNHIGDLLKRQNTWYGKTTLWPIEGTN 156
            S +     G      +G  L  ++ +    D    +   ++       +      +   
Sbjct: 73  FSPQAQALFGLP-DDSVGQPLAQLNSLFSAVDLERVVQSAVQGLADVEHE----YQDSEG 127

Query: 157 LYVPIDLAALPIYSR--NREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214
            +  +++ A        +     F+   I  +       ++     ++  +         
Sbjct: 128 RWWLVNVRAYRTADDRIDGAVLAFQ--DIHQLKSALGTAQSAQLDAERANTAKDNFLALV 185

Query: 215 SSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQED 274
           S   +   ++ S  +       +  + +  +        +      L       L +   
Sbjct: 186 SHELRAPLNVISSWAAVLMTASERGMPTDEQMSQRAVTTILRHCQ-LQAELIDDLLDVSR 244

Query: 275 FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF 334
             +   +  +K   F        ES   ++ +    L+    + + +      +      
Sbjct: 245 ISSGRFSLDSKPVDFAAAVRTVVESHRPVAAKKDIMLATSGLQSQAVVSGDARRLQQ-VA 303

Query: 335 VYSHGNLFYANP-------SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
               GN     P       +   L     +   +   G+   L                 
Sbjct: 304 SNLIGNALKFTPQGGRVEVALTRLGALIELSVADNGIGVKPELLPRLFDRFMQSDTSRTR 363

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
           +     +  S   H +  +      +T     +       +    ++    +        
Sbjct: 364 QYGGLGLGLSIVKHLVTAHGGT---VTASSEGEGRGTRLTVRIPLLQTAATEEGTV-AAA 419

Query: 448 EIEVMQLCSILEATSDGIAIINRE 471
             E  +L    +  S  + +++ +
Sbjct: 420 PAESARL----DGLS--VLLVDDD 437


>gi|206976128|ref|ZP_03237037.1| sporulation kinase A [Bacillus cereus H3081.97]
 gi|206745582|gb|EDZ56980.1| sporulation kinase A [Bacillus cereus H3081.97]
          Length = 510

 Score =  307 bits (787), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 104/535 (19%), Positives = 202/535 (37%), Gaps = 42/535 (7%)

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTK 353
           +S +   + +                +     +  P     +   G + + NPS   +  
Sbjct: 7   SSTQRKRHPNISRRLRNHIQDCSLTEMYASLFEHNPDGIISLNLEGIIIHTNPSAERILG 66

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
           Y S + +E     S L       + +  + V+    +         + +I       L +
Sbjct: 67  YTSSE-LERKSITSIL-------EAHISEQVLQNIKNTEADNQQEYILSIYHKDGFLLDV 118

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
                    Q         ++P +   RI ++K++    +L +++ +    +   + EG 
Sbjct: 119 VTKLVPIFVQNRLTGVYAIMKPLEKSERI-EKKLKESEKRLRTLVNSMPAFVIFKDHEGR 177

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN----HYLTEILSLDLRQTLEKIT 529
            L  N      F +       K  +  ++ N            + E+     RQ L    
Sbjct: 178 WLEANDYALSCFNFHHVPYHGKKDSELIQYNEAYREAFLHCEEVDELAWQ-QRQILHGEE 236

Query: 530 LGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
               +++  L L I    L           +   DI+E K+ +  L  ++K+A       
Sbjct: 237 FIIHRDDFDLILSISKVPLYHPDGSRKGLIVMGRDITELKETEKLLRKSEKLAVV----- 291

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
               A ++HEIR PLT++ GF  ++      P  N     Y + +    + +  I +  +
Sbjct: 292 GQLTAGIAHEIRNPLTSLKGFLTLLL-----PEINEEQKWYIDVMLSEISQMESITSQFM 346

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
            +SK +     L  +  ++   + E ++ +   A    + I     + +  I  D   +K
Sbjct: 347 AMSKPQ----VLAIQTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYVYDIQCDGNQLK 402

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           Q+ +NIL NAI   P+GG I I T       +++R+ D G G+    + +  +PF     
Sbjct: 403 QVFINILKNAIEAMPNGGNIFIQTKPLEGNFILIRIIDEGCGIPEDRISRLGEPFY---- 458

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820
              ++ +GTGLGL +   +++ + GK +I S   KGT+++I  PL   S PH  I
Sbjct: 459 --SLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTVVDIHLPL---SSPHLAI 508


>gi|327396224|dbj|BAK13646.1| aerobic respiration control sensor protein ArcB [Pantoea ananatis
           AJ13355]
          Length = 778

 Score =  307 bits (787), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 90/448 (20%), Positives = 179/448 (39%), Gaps = 18/448 (4%)

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
             +     + D        L R          R   +    + +++          +  E
Sbjct: 68  WAVYFLSVVVDQLEESRQRLARLVDKLEEMRTRDLELNQQMKETISQLNNEIADRKKAEE 127

Query: 427 NMPQNGI--EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
              Q       E       + ++E +   L S L+A+ D +   N +      NRA+  L
Sbjct: 128 AREQVMAKLREEVARREQAQIELEQQSSFLRSFLDASPDLVFYRNIDKQFSGCNRAMELL 187

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
            G   + ++        + +T + +     ++   ++  T E+        +    +R +
Sbjct: 188 TGKSEKQLIGLTPRDIYDNDTATKVLETDEKVFRHNVSLTYEQWLQYPDGRKACFEIRKV 247

Query: 545 IK--KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
               ++   S       DI+E K+        +   E  S  K+ F++ +SHE+RTPL  
Sbjct: 248 PYYDRVGKRSGLMGFGRDITERKR-------YQDALESASREKTTFISTISHELRTPLNG 300

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           I+G S ++ +       N   ++Y   I  S   + +I ND++++ KIE  K+ L  +PV
Sbjct: 301 IVGLSRILLDTDL----NQEQLKYLKTIHVSAITLGNIFNDVIEVDKIERRKVQLDNQPV 356

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPS 721
                +++  +L  L A  K +    +    +P  I  D   ++QI  N++ NA+ FT  
Sbjct: 357 DFTSFLADLENLSGLLAQPKGLKFVMAPQLPLPHKISTDGTRLRQILWNLIGNAVKFTQQ 416

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ-IPNSQQIRGEGTGLGLPL 780
           G +I++   +  +E +   V+D+G G+   E +K    + Q           GTG+GL +
Sbjct: 417 G-EIVVRVAYEQDETLRFEVQDSGQGIRQEEQDKIFAMYYQVTDQHGGKPATGTGIGLAV 475

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           ++ +  A  G   + S P +G+   ++ 
Sbjct: 476 SRRLAQAMGGDISVNSAPGQGSCFTVVI 503



 Score = 43.9 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 61/198 (30%), Gaps = 18/198 (9%)

Query: 21  NTQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIP 80
           N +   +KK +   E   +K         +     +Q  +S    ++LD+    VF    
Sbjct: 116 NNEIADRKKAEEAREQVMAKLREEVARREQAQIELEQ--QSSFLRSFLDASPDLVFYR-- 171

Query: 81  RTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ 140
                  NID        +  +    G    ++IG+   D+ D           + + R 
Sbjct: 172 -------NIDKQ--FSGCNRAMELLTGKSEKQLIGLTPRDIYDNDTATKVLETDEKVFRH 222

Query: 141 N-TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199
           N +   +  L   +G       ++  +P Y R  + SG  GFG           +   + 
Sbjct: 223 NVSLTYEQWLQYPDGRKACF--EIRKVPYYDRVGKRSGLMGFG--RDITERKRYQDALES 278

Query: 200 LDKKFSHLHEIKKGHSSV 217
             ++ +            
Sbjct: 279 ASREKTTFISTISHELRT 296


>gi|318604060|emb|CBY25558.1| aerobic respiration control sensor protein arcB [Yersinia
           enterocolitica subsp. palearctica Y11]
          Length = 778

 Score =  307 bits (787), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 79/382 (20%), Positives = 164/382 (42%), Gaps = 18/382 (4%)

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
                + ++  +   L S L+A+ D +   N +      NRA+  L G   + ++     
Sbjct: 142 HREQAQVELGQQSALLRSFLDASPDLVYYRNEDNEFSGCNRAMELLTGKSEKQLVGLTPK 201

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII--KKLPFSSCYSL 556
                +    +     ++   ++  T E+  +     +    LR +    ++        
Sbjct: 202 DVYAPDIAEKVMETDEKVFRHNVSLTYEQWLVYPDGRKACFELRKVPFYDRVGKRHGLMG 261

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
              DI+E K+ ++ L +        S  K+ F++ +SHE+RTPL  I+G S ++ +    
Sbjct: 262 FGRDITERKRYQDALEN-------ASRDKTTFISTISHELRTPLNGIVGLSRILLDTEL- 313

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
              +   ++Y   I  S   + +I ND++++ K+E  K+ L  +P+     +++  +L  
Sbjct: 314 ---DSEQLKYLKTIHVSAITLGNIFNDIIEMDKLERRKVQLDNQPIDFTSFMADLENLSG 370

Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
           L    K +         +P  ++ D   ++QI  N++ NA+ FT  G +I++     SN+
Sbjct: 371 LLVQPKGLKFIMEPQLPLPEKVITDGTRLRQILWNLIGNAVKFTQQG-EIVVRVRRESND 429

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ-IRGEGTGLGLPLAKAMVDANMGKFYI 794
            +I  V D+G+G+   E +K    + Q+ +S       GTG+GL ++K +  +  G   +
Sbjct: 430 RLIFEVEDSGMGIPEDEQDKIFAMYYQVKDSNGGRPATGTGIGLAVSKRLAQSMGGDITV 489

Query: 795 FSTPAKGTLIEIIF--PLYDTS 814
            S    G+   +    P    +
Sbjct: 490 KSVQGAGSCFTLTIKAPAVQAA 511



 Score = 42.3 bits (98), Expect = 0.38,   Method: Composition-based stats.
 Identities = 16/124 (12%), Positives = 35/124 (28%), Gaps = 5/124 (4%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN-TWYGKTTLWPIE 153
               +  +    G    +++G+   DV      +      + + R N +   +  L   +
Sbjct: 177 FSGCNRAMELLTGKSEKQLVGLTPKDVYAPDIAEKVMETDEKVFRHNVSLTYEQWLVYPD 236

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
           G       +L  +P Y R  +  G  GFG           +   +   +  +        
Sbjct: 237 GRKACF--ELRKVPFYDRVGKRHGLMGFG--RDITERKRYQDALENASRDKTTFISTISH 292

Query: 214 HSSV 217
               
Sbjct: 293 ELRT 296



 Score = 40.4 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 21/224 (9%), Positives = 54/224 (24%), Gaps = 10/224 (4%)

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
           V  L E       ++   +       E +    E+   +N     +++          + 
Sbjct: 77  VEQLEESRQRLSRLVDKLEVMRYRDLELNKQLTENIAQLNQEIVEREKAEKAHLQVVDKL 136

Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVD 358
            E + H           +   L    +D  P   +  +        N +  LLT      
Sbjct: 137 KEEMGH--REQAQVELGQQSALLRSFLDASPDLVYYRNEDNEFSGCNRAMELLTGKSEKQ 194

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
            +        L      + + A K +           +      + +             
Sbjct: 195 LVG-------LTPKDVYAPDIAEKVMETDEKVFRHNVSLTYEQWLVYPDGRKACFELRKV 247

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
              ++  +     G   +  + +  +  +E       + +   S
Sbjct: 248 PFYDRVGKRHGLMGFGRDITERKRYQDALENASRDKTTFISTIS 291


>gi|253991118|ref|YP_003042474.1| aerobic respiration control sensor protein ArcB [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253782568|emb|CAQ85732.1| aerobic respiration control sensor protein [Photorhabdus
           asymbiotica]
          Length = 781

 Score =  307 bits (787), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 88/402 (21%), Positives = 171/402 (42%), Gaps = 18/402 (4%)

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
            +  +    +  + ++ E       + ++E + + L S L+A+ D +   N        N
Sbjct: 122 REKAEQAHLILLDKLQEEVKHREQTQIELEQQSILLKSFLDASPDLVYYRNENNEFSGCN 181

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
           RA+  L G   + ++        ++     +     ++   ++  T E+  +     +  
Sbjct: 182 RAMELLTGKSQKQLIGLTPHDVYDKEVARKVMETDEKVFRHNVALTYEQWLVYHDGRKAC 241

Query: 539 LSLRIII--KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
             LR +    ++           DI+E K+ ++ L +        S  K+ F++ +SHE+
Sbjct: 242 FELRKVPFYDRVGKRHGLMGFGRDITERKRYQDALEN-------ASRDKTTFISTISHEL 294

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTPL  I+G S ++ +             Y   I  S   + +I ND++++ KIE  K+ 
Sbjct: 295 RTPLNGIVGLSRILLDTELTT----EQNNYLKTIHVSAITLGNIFNDIIEMDKIERRKVQ 350

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNA 715
           +  +P+     +S+  +L  L    K I      A ++P +IL D   ++QI  N++ NA
Sbjct: 351 IDNQPIDFTGFMSDLENLSGLLVQPKGIKFVMEPALSLPAKILTDGTRLRQILWNLIGNA 410

Query: 716 IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGEGT 774
           + FT  G +I +   +   E +   V DTG+G+   E EK    + Q+  S       GT
Sbjct: 411 VKFTQEG-EIHVRIWYEEGERLFFEVTDTGIGIPLDEQEKIFAMYYQVKGSNGGCPATGT 469

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF--PLYDTS 814
           G+GL ++K +     G   + S P +G+   +    P  + S
Sbjct: 470 GIGLAVSKRLAQNMGGDIVVKSEPGQGSRFTLSIIAPALEES 511


>gi|218782540|ref|YP_002433858.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218763924|gb|ACL06390.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 934

 Score =  307 bits (787), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 88/564 (15%), Positives = 190/564 (33%), Gaps = 48/564 (8%)

Query: 276 HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP---------SLSAYFDEGENLTPETV 326
           H +        Q    L+       + ++  N            +     E  +     +
Sbjct: 217 HQLLTEHEKVNQANQELEQEVARRTQEITRANQDLSLKIEQNLRIMEKLKESRDFAESLI 276

Query: 327 DKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
                   V+S  G     NP+F  +T +   + ++++        A    ++ A+    
Sbjct: 277 KSLQDGLAVFSPEGRHLEVNPAFCHMTGFSREEILDMSPP-----HAYWAPEDKAMLTRA 331

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
              S      +      ++ +      +        ++  +         +    ++ ++
Sbjct: 332 FANSSAVSRPSGMETALVRRDGTRIQIL-ISLSPIRHEGEDLTGYVVTFKDINARKMAEQ 390

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            +     +  +IL +  +    ++  G  +  N AV +  GY  E++L      +     
Sbjct: 391 ALAHSEARYRAILASMEELYFELDLFGRFIFVNDAVMRFTGYSREELLDLEKGWYNLTME 450

Query: 506 PSVMNHYLTEILSLDLRQTLE-KITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDIS 562
              M    + I +      LE    L     EK   +   + +    +   +     DI+
Sbjct: 451 GDRMFGAFSTIYASGQTAVLEDFPVLARGGAEKFAQISAYLMRDKEGNPMGFKGLGRDIT 510

Query: 563 E--WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           E      + KL  ++    ++          ++H+    L+AI+ ++E +  +      N
Sbjct: 511 ESMAVAREKKLLESQLRQSQKMEAVGTLAGGIAHDFNNILSAIMAYTEAMLMEPDDRTKN 570

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
              +     + ++     +++  +L  S+           PVSL     EA+ L++    
Sbjct: 571 ---VTRLENVKKASLRARELIRQILTFSR----NTEHKKTPVSLPFITREALKLLRASLP 623

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS-GGQIIIS----------- 728
              I I+     N+ R++AD   + Q+ +N+  NA H     GG + +S           
Sbjct: 624 S-TIKIQYRAEENMGRVMADPTQIHQVLMNLCGNAEHAMRKNGGVLDVSLDTVFLPPGEA 682

Query: 729 ---TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
                 +    + L V DTG GM+    ++   P+         +GEGTGLGL +   +V
Sbjct: 683 APHVNLSPGRYIRLSVADTGQGMSPDVKKRIFDPYYTTK----EKGEGTGLGLAVVHGIV 738

Query: 786 DANMGKFYIFSTPAKGTLIEIIFP 809
           +A  G   + S   +G    +  P
Sbjct: 739 EAGQGAVTVESEVGRGACFRVYLP 762



 Score = 68.5 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 23/316 (7%), Positives = 74/316 (23%), Gaps = 25/316 (7%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTWYG---- 145
             G   E++       G    +++ M             +   +       +        
Sbjct: 288 PEGRHLEVNPAFCHMTGFSREEILDMSPP---HAYWAPEDKAMLTRAFANSSAVSRPSGM 344

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +T L   +GT   + I ++  PI     + +G+                      + ++ 
Sbjct: 345 ETALVRRDGT--RIQILISLSPIRHEGEDLTGY--VVTFKDINARKMAEQALAHSEARYR 400

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPP--PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL- 262
            +    +                          + ++  L + + +              
Sbjct: 401 AILASMEELYFELDLFGRFIFVNDAVMRFTGYSREELLDLEKGWYNLTMEGDRMFGAFST 460

Query: 263 --TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
              S ++++ E          +   +     +++       +       + S      + 
Sbjct: 461 IYASGQTAVLEDFPVLARGGAEKFAQISAYLMRDKEGNPMGFKGLGRDITESMAVAREKK 520

Query: 321 LTPETVDKCP--------IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
           L    + +               +   N+  A  ++      +  D  +    L  +  A
Sbjct: 521 LLESQLRQSQKMEAVGTLAGGIAHDFNNILSAIMAYTEAMLMEPDDRTKNVTRLENVKKA 580

Query: 373 PKLSDNNAIKPVMLYR 388
              +     + +   R
Sbjct: 581 SLRARELIRQILTFSR 596



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 45/437 (10%), Positives = 115/437 (26%), Gaps = 37/437 (8%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIG--MRLCDVSDILHIDPNNHIGDLLKRQNTWY 144
           + +D  G    +++ + +  G    +++       +++             +     T  
Sbjct: 411 FELDLFGRFIFVNDAVMRFTGYSREELLDLEKGWYNLTMEGDRM-FGAFSTIYASGQTAV 469

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            +       G        ++A  +  +     GF+G G               K L+ + 
Sbjct: 470 LEDFPVLARGGAEKFA-QISAYLMRDKEGNPMGFKGLG--RDITESMAVAREKKLLESQL 526

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
               ++        +    +    +   +  +   ++         DD  K     L   
Sbjct: 527 RQSQKM--------EAVGTLAGGIAHDFNNILSAIMAYTEAMLMEPDDRTKNV-TRLENV 577

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
           +++SL  +E    I       +     +  +              SL +           
Sbjct: 578 KKASLRARELIRQILTFSRNTEHKKTPV--SLPFITREALKLLRASLPSTIKIQYRAEEN 635

Query: 325 TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN----A 380
                  P  ++        N    +      +D       L T+   P  +  +     
Sbjct: 636 MGRVMADPTQIHQVLMNLCGNAEHAMRKNGGVLDV-----SLDTVFLPPGEAAPHVNLSP 690

Query: 381 IKPVMLYRSD---RTCIAASARLH-----TIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
            + + L  +D           R+      T +      L +  +             ++ 
Sbjct: 691 GRYIRLSVADTGQGMSPDVKKRIFDPYYTTKEKGEGTGLGLAVVHGIVEAGQGAVTVESE 750

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGY--PV 489
           +             +E E +Q  +  +   D  I +++ E  +L +  A+ + +GY    
Sbjct: 751 VGRGACFRVYLPETLEKEEIQESAAGDVAGDETILLVDDESDLLDSYTALFRHYGYHVSA 810

Query: 490 EDILRKPFTVFLEQNTP 506
                + F  F+     
Sbjct: 811 HQCSSQAFARFMSGPEQ 827


>gi|168187447|ref|ZP_02622082.1| two-component sensor histidine kinase [Clostridium botulinum C str.
           Eklund]
 gi|169294655|gb|EDS76788.1| two-component sensor histidine kinase [Clostridium botulinum C str.
           Eklund]
          Length = 779

 Score =  307 bits (787), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 82/380 (21%), Positives = 160/380 (42%), Gaps = 13/380 (3%)

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
           +    +  +     +L +++ ++ D I + +     L  N+A          D   K   
Sbjct: 371 EKHNTRTALIESEKRLRTLINSSPDLICLKDGNCRWLEINKATVNFLNLKNIDWKNKTTE 430

Query: 499 VFLEQNTPSVMNHYLTEI-----LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS- 552
             +  N  +   + L +      L+L  +  +       +     + L I    +  S+ 
Sbjct: 431 QLI--NLTNTYKNRLEKYKNFDFLTLKQKSIINYQDEFFSNNGSKIVLDIFKVPIFDSNN 488

Query: 553 ---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                    HD++   + + +       A      ++ F A +SHE++TPL  I+   + 
Sbjct: 489 NPSGLVTIGHDLTPHLKAE-ENKKLLDEALSYQQLRTKFFANISHELKTPLNLILSAIQF 547

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           +++          + +Y + I  +   ++ I+N++LDI+KI+SG   +H E  ++ E V 
Sbjct: 548 LQSVNGDSSLRTNFNKYGDVIKENSYRMVRIINNILDITKIDSGYFEIHPENYNIVEVVE 607

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
           +       Y N K +            I  D   +++I LN+LSNAI FT +GG+I ++ 
Sbjct: 608 DICLYSSSYINSKNLEFIFDTDTEEKIIACDPHLIERIILNLLSNAIKFTNAGGKITVNM 667

Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
            +   + + + ++DTG+G+     +   + F QI  S     EG+G+GL L K+ VD + 
Sbjct: 668 -YDKGDFIDISIKDTGIGIPKNHQKIIFERFVQIDKSLSRNQEGSGVGLSLVKSFVDLHN 726

Query: 790 GKFYIFSTPAKGTLIEIIFP 809
           G   + S    G+   I  P
Sbjct: 727 GFIKLNSKVGHGSEFIITLP 746


>gi|212212885|ref|YP_002303821.1| two component system histidine kinase [Coxiella burnetii CbuG_Q212]
 gi|212011295|gb|ACJ18676.1| two component system histidine kinase [Coxiella burnetii CbuG_Q212]
          Length = 630

 Score =  307 bits (787), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 101/504 (20%), Positives = 195/504 (38%), Gaps = 43/504 (8%)

Query: 313 AYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
              +  +      +D+      + +   ++   N +     + K    I           
Sbjct: 13  KLMESQQAQFEHLIDRADDLVVIVNPDYSIIDLNNAAEQFYQCKREAVIGRN-------- 64

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
                        +   +        A L T + + +           +  Q    +   
Sbjct: 65  -------------LFEIAVEEEWQLPASLLTHRRSIKRISWSVVSLPPRYGQKGYMLTGQ 111

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-PVE 490
            I      ++I           L +IL      I   +R  + L  N   +KL G+   E
Sbjct: 112 VISKSVNASQI----------FLENILYNIPQYILWKDRNFVYLGCNHNFAKLVGFETPE 161

Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
            I+ K           + +     E+L       +E+       +E +  +  +  +   
Sbjct: 162 SIIGKTDFDLWRSQGANSIRPTDVEVLEGKQLVDVEQSLSLPNGKEGVFLISKVPLRDER 221

Query: 551 SS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
           +      +   DI+E KQ + KL  AK  AE     KS+F+A +SH++RTP+  I+G ++
Sbjct: 222 NEIIGILVVGTDITERKQNEQKLIEAKLQAELSDRAKSEFIANISHDLRTPINGILGIAQ 281

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
           +           P      N +  S NL+L +V D+LD +++E GK+ L +   +L + V
Sbjct: 282 IFNMHEHTKKQEP----LINDLSASANLLLGLVEDILDFARLEVGKLELKYSTFNLRQLV 337

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIII 727
           +  +        +K+I I   +  ++P  I+++   +++I LN++ NA+ FT  G QI +
Sbjct: 338 TFLVKTFSFQTQQKQIKINVYYDASLPDSIVSEPNYIRRIFLNLIGNAVKFTEKG-QIDV 396

Query: 728 STTHTSN--EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
           +     N    + + V+DTG+G+   +L      F +       R EG GLGL + K ++
Sbjct: 397 TVNLEGNKPAMLKILVKDTGIGIPKDKLNTIFDRFSRATPVYSSRYEGLGLGLSIIKRLL 456

Query: 786 DANMGKFYIFSTPAKGTLIEIIFP 809
           D   G+ ++ S   +G+   +  P
Sbjct: 457 DNLGGEVHVSSIENEGSTFTLTIP 480



 Score = 48.9 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/100 (14%), Positives = 35/100 (35%)

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
             + K+ ME +  Q   +++   D + I+N +  I+  N A  + +    E ++ +    
Sbjct: 8   ESVRKKLMESQQAQFEHLIDRADDLVVIVNPDYSIIDLNNAAEQFYQCKREAVIGRNLFE 67

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
              +    +    LT   S+               ++  +
Sbjct: 68  IAVEEEWQLPASLLTHRRSIKRISWSVVSLPPRYGQKGYM 107


>gi|193213741|ref|YP_001994940.1| multi-sensor signal transduction histidine kinase [Chloroherpeton
            thalassium ATCC 35110]
 gi|193087218|gb|ACF12493.1| multi-sensor signal transduction histidine kinase [Chloroherpeton
            thalassium ATCC 35110]
          Length = 1332

 Score =  307 bits (786), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 98/651 (15%), Positives = 216/651 (33%), Gaps = 53/651 (8%)

Query: 186  VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP----------PPHLR 235
                  + +   +   ++FS   +                                 H  
Sbjct: 701  DITELKNAQKALEENQQRFSIAADSAGIGVWELDLVTGGMIWDEWMFKLYQKPKEAFHGN 760

Query: 236  MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN 295
              +  S+L      + D +        +  +       +    +  +   K Y   L++ 
Sbjct: 761  FTDWKSALAPGEFERMDPIIQSTIASKSDND--FEMSFEIIWPSGEKRVLKTYGRALKDE 818

Query: 296  SKESFEYLSHRNHPS----LSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLL 350
            + ++          +          + +       +     +  V   G +   +PS   
Sbjct: 819  AGKAVRLTGINYDITDKTKAEERIRKSQEKYKAIFNTIQDVYAEVALDGTILEISPSIKK 878

Query: 351  LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
            ++ Y   + +     +      P   +N   +                +L   +      
Sbjct: 879  ISGYSRQEMLGKN--IYHFYSNPLERENLRKELF----KHGYLNDYEVKL---RHLDGAV 929

Query: 411  LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470
               +F      ++  +     G   +  D +  +  +     +  +I     D  A +  
Sbjct: 930  RTCSFTVSVILDRSGQPKKIVGSMRDITDRKKAEENIRKSEEKYKAIFNTIQDVYAEVAL 989

Query: 471  EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530
            +G IL    ++ +  GY  E +L K  +   +   P+  +  + E+        ++   +
Sbjct: 990  DGSILEITPSIERFTGYSREYLLGKKTSTLYK--DPTARDRMVEELSQKG--SLVDYEVV 1045

Query: 531  GSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKI-------AE 579
             + K+        II      +        +M DI+E K+ +  +   ++         +
Sbjct: 1046 FAHKDGSSKMGSFIIGLQYDLNGKPYKLVGSMRDITERKKYEQDILEKEQRYRLLAHDLQ 1105

Query: 580  KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639
            K +    DF   VSH+++ PL AI   S  + +     L +    E  + +      + D
Sbjct: 1106 KANRELKDFAYIVSHDLKAPLRAIGSLSSWLYSDYVDRL-DEEGKETLSLLVGRVKRMHD 1164

Query: 640  IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA 699
            ++  +L  S+I  G++   F  + LD  + E +  + +    K I +      ++P I+A
Sbjct: 1165 LIEGILQYSRI--GRIKEAFVEIELDLLIDEIVDFLSI---PKHISVVKD--TSLPNIIA 1217

Query: 700  DLRSVKQIALNILSNAIHFTP-SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
            +   + Q+  N++SNA+ +     G+I I     + E     V+D G G+     EK  +
Sbjct: 1218 EKTRMMQVFQNLISNAVKYNDKEHGEISIG-HVENGETWQFYVKDNGPGIDEKYHEKIFQ 1276

Query: 759  PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             F  +  + +   E TG+GL + K +++   G   + ST  KGT   I  P
Sbjct: 1277 IFQTL--APRDEHESTGIGLTIVKKIIEMYGGTIAVESTMGKGTTFWIELP 1325



 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 54/537 (10%), Positives = 150/537 (27%), Gaps = 56/537 (10%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAF-KMIGMRLCDVSDILHIDPNNHIGD----LLKRQ 140
            + +D  G  + I+E   +  G     + +G  L D       + N H  +    +L+ +
Sbjct: 355 IFQVDREGKCEFINEAWERITGYKPQKECLGKNLFDF---FGNEKNPHFKEIGQGILEGK 411

Query: 141 NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
              + +T        +L   ++L  LP         G   FG +  +          K  
Sbjct: 412 IPRFYETMQLKTCDGSLR-WVELMLLPRCDEPGNIIGL--FGTMMDSTKQVQALESLKNS 468

Query: 201 DKKFSHLHEIKKGHS----SVEKEKYDIFSQ------QSPPPHLRMKNKVSSLTEYYAHK 250
           ++ +  + ++   ++     +E  ++D           +        ++ +     Y   
Sbjct: 469 ERIYRRISQLISDYAYRLIPLENGEFDFKWLMVGGFYSNLGFLPNEVSEKAWFEFIYPDD 528

Query: 251 DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL-----SH 305
             +L      L   E  ++  + +      +    +       N+     E +       
Sbjct: 529 RHILDLRDACLRKGEPVTIQLRVETQ--EGDLIWLEDAASPFLNHETGEIEEIICVISDI 586

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAG 364
                      +  +     +   P    V      + + N +   + + K  D +    
Sbjct: 587 TMRKRAEKEIRQAHDNLKVIMRTAPFGVVVVGQDQRIRWTNETVKRMARLKETDSLVGRS 646

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
                 +  K                           +          +  +       F
Sbjct: 647 CSDYFCNGEKN-----------------LCPILKYGISDSKCENRFQDIHILKTVNEIVF 689

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN--REGIILSTNRAVS 482
                      +  + +  ++ +E    +     ++   G+  ++    G+I   +  + 
Sbjct: 690 EGEDVFLETFVDITELKNAQKALEENQQRFSIAADSAGIGVWELDLVTGGMI--WDEWMF 747

Query: 483 KLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKL 538
           KL+  P E        +   L       M+  +   ++       E     +  + E+++
Sbjct: 748 KLYQKPKEAFHGNFTDWKSALAPGEFERMDPIIQSTIASKSDNDFEMSFEIIWPSGEKRV 807

Query: 539 LSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
           L       K         +   +DI++  + + ++  +++  +   +   D  A V+
Sbjct: 808 LKTYGRALKDEAGKAVRLTGINYDITDKTKAEERIRKSQEKYKAIFNTIQDVYAEVA 864



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 42/445 (9%), Positives = 112/445 (25%), Gaps = 52/445 (11%)

Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRL-----------DKKFSHLHEIKKGHSSVEKEKY 222
           EF GF GF      R+  +                   ++    L   +  + SV +   
Sbjct: 293 EFWGFIGFDDCTTARLWTESEEAILVSVGASVGGAIDKERSQKALLRSQAKYKSVVENIE 352

Query: 223 DIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL----------------KTEKYPLLTSEE 266
           ++  Q          N+       Y  + + L                K     +L  + 
Sbjct: 353 EVIFQVDREGKCEFINEAWERITGYKPQKECLGKNLFDFFGNEKNPHFKEIGQGILEGKI 412

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
               E     T + +    +       +               +      E    +    
Sbjct: 413 PRFYETMQLKTCDGSLRWVELMLLPRCDEPGNIIGLFGTMMDSTKQVQALESLKNSERIY 472

Query: 327 DKCPIPFFVYSHGNLFYANPSFLLLTKYKS---------VDDIEIAGGLSTLLDAPKLSD 377
            +       Y++  +   N  F                  +++        +    +   
Sbjct: 473 RRISQLISDYAYRLIPLENGEFDFKWLMVGGFYSNLGFLPNEVSEKAWFEFIYPDDRHIL 532

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
           +  ++   L + +      + +L       +             ++  E      +  + 
Sbjct: 533 D--LRDACLRKGE----PVTIQLRVETQEGDLIWLEDAASPFLNHETGEIEEIICVISDI 586

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV-EDILRKP 496
              +  ++++      L  I+     G+ ++ ++  I  TN  V ++      + ++ + 
Sbjct: 587 TMRKRAEKEIRQAHDNLKVIMRTAPFGVVVVGQDQRIRWTNETVKRMARLKETDSLVGRS 646

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556
            + +      ++       I         + I +  T  E +               +  
Sbjct: 647 CSDYFCNGEKNLCPILKYGISDSKCENRFQDIHILKTVNEIVF---------EGEDVFLE 697

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKE 581
           T  DI+E K  +  L   ++     
Sbjct: 698 TFVDITELKNAQKALEENQQRFSIA 722



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 60/159 (37%), Gaps = 6/159 (3%)

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRKPF 497
           D   +++ +     +  S++E   + I  ++REG     N A  ++ GY P ++ L K  
Sbjct: 329 DKERSQKALLRSQAKYKSVVENIEEVIFQVDREGKCEFINEAWERITGYKPQKECLGKNL 388

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----C 553
             F               IL   + +  E      T +  L  + +++            
Sbjct: 389 FDFFGNEKNPHFKEIGQGILEGKIPRFYE-TMQLKTCDGSLRWVELMLLPRCDEPGNIIG 447

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
              TM D ++  Q    L ++++I  + S   SD+  R+
Sbjct: 448 LFGTMMDSTKQVQALESLKNSERIYRRISQLISDYAYRL 486



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 37/379 (9%), Positives = 104/379 (27%), Gaps = 24/379 (6%)

Query: 92   HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151
             G + EIS  + K  G    +M+G  +        ++  N   +L K       +  L  
Sbjct: 866  DGTILEISPSIKKISGYSRQEMLGKNIYHFYSNP-LERENLRKELFKHGYLNDYEVKLRH 924

Query: 152  IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
            ++G        ++   I  R+ +    +  G +             ++ ++K+  +    
Sbjct: 925  LDGAVRTCSFTVSV--ILDRSGQPK--KIVGSMRDITDRKKAEENIRKSEEKYKAIFNTI 980

Query: 212  KGHSS--VEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
            +   +           +          +  +        +KD   +      L+ + S +
Sbjct: 981  QDVYAEVALDGSILEITPSIERFTGYSREYLLGKKTSTLYKDPTARDRMVEELSQKGSLV 1040

Query: 270  PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
              +  F   + +        G   + + + ++ +      +    +++      +     
Sbjct: 1041 DYEVVFAHKDGSSKMGSFIIGLQYDLNGKPYKLVGSMRDITERKKYEQDILEKEQRYRLL 1100

Query: 330  PIPFFVYSHGNLFYANPS---FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
                      +L  AN     F  +  +     +   G LS+ L +  +   +      L
Sbjct: 1101 --------AHDLQKANRELKDFAYIVSHDLKAPLRAIGSLSSWLYSDYVDRLDEEGKETL 1152

Query: 387  YRSDRTCIAA----SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
                             L   +  R     +        ++  + +          DT +
Sbjct: 1153 SLLVGRVKRMHDLIEGILQYSRIGRIKEAFVEIELDLLIDEIVDFLSIPKHISVVKDTSL 1212

Query: 443  NKRKMEIEVMQLCSILEAT 461
                +  E  ++  + +  
Sbjct: 1213 P--NIIAEKTRMMQVFQNL 1229


>gi|229918207|ref|YP_002886853.1| histidine kinase [Exiguobacterium sp. AT1b]
 gi|229469636|gb|ACQ71408.1| histidine kinase [Exiguobacterium sp. AT1b]
          Length = 852

 Score =  307 bits (786), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 95/595 (15%), Positives = 234/595 (39%), Gaps = 40/595 (6%)

Query: 237 KNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS 296
           ++++ +++  +    + L+  +  L+        +QE+          ++Q    +   +
Sbjct: 268 EDEIGTMSRSFHKMAETLRDNERHLIEKNHELQAQQEELIAQQEELQAQQQELEEILEQT 327

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPS-FLLLTKYK 355
           +++ ++L++RN  + +    +     PE ++K  +       G L + + S    +T + 
Sbjct: 328 QQNEQHLAYRNELTETLASRDSLTAYPEIIEKL-VTITDSEVGALVFVDESGTYRVTSHG 386

Query: 356 SVDDIEI--AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN---- 409
             D +        +++L               +                +  +       
Sbjct: 387 LNDTLSRQLLDSENSVLTRAMTLKTTVHSSKQVASDHPLPYPYYMFETAVPVHDPTDDSI 446

Query: 410 ---SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
                 + +       Q  + M         +       +M+ E  +   IL++  + + 
Sbjct: 447 IAFIYLVRYKDRFTQTQMGDIMSFARQLSLSLLRMRLFEEMKREKGKTERILDSIREAVV 506

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL----- 521
            I+     +  NR + ++F   + D+  +       +   + +   + +           
Sbjct: 507 YIDHSTNDVFVNRPLYEMFP-ELSDVSSQDLEEETWEEWRNRLVETVDQAEDFTKYTNRL 565

Query: 522 -RQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKI 577
             +     ++  +  +  ++L++  +++          L   DI+               
Sbjct: 566 FTEDFPHDSVSFSIRKGEMNLQMYAERIIVGGLSKGTLLVFRDIT--------------S 611

Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
             +    KS+F++ +SHE+RTPL++I GF+E++  ++   L N +  +Y   I      +
Sbjct: 612 ETEAERLKSEFISTISHELRTPLSSIYGFTELMVKKQ---LPNEKQAKYLETIHSETERL 668

Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697
             +VND LD+ ++ESG      E + ++  V + ++  +  + +    +          +
Sbjct: 669 THLVNDFLDVQRMESGSQMYDREQLDIEPVVRDMLTFYEASSLKHEFELIAD-DARPYEL 727

Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757
             D +  KQ+  N+LSNA+ ++P GG+I +   H     V ++V+D G+G+ +  L++  
Sbjct: 728 FVDCQKFKQLMSNLLSNAVKYSPRGGKITVELAHHEQI-VSIKVKDEGIGIPSDALDRLF 786

Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
             F ++ NS      GTGLGLP+ + +V  + G+ ++ S   +G+   +  P Y+
Sbjct: 787 DKFYRVDNSDSREIGGTGLGLPICQEIVRGHNGQIHVESIQHEGSTFIVEIPSYE 841


>gi|197118785|ref|YP_002139212.1| response receiver sensor histidine kinase response regulator
           [Geobacter bemidjiensis Bem]
 gi|197088145|gb|ACH39416.1| response receiver sensor histidine kinase response regulator, PAS
           and PAS domain-containing protein [Geobacter
           bemidjiensis Bem]
          Length = 773

 Score =  307 bits (786), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 102/642 (15%), Positives = 203/642 (31%), Gaps = 50/642 (7%)

Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE 245
           +     +  AL  R  +    +   +       +   D            M         
Sbjct: 9   IVDDSPEDAALIVRQLQGEFSISYERVETPDEMEAALDKGGWHIVISDYVMPKFSGLAAL 68

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
              H   +            E +    E       +   K +    +    +E  + +  
Sbjct: 69  KLLHDRGMDLPFIMVSGQMGEDA--AVEAMRAGAHDYLLKDRLSRLIPAIKRELNDAVVR 126

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365
           R            E      V++  +  F+       Y NP F  +  Y+    IE    
Sbjct: 127 RERRMAEEALSATEARFHSLVEQSLVGIFMLQDDVFIYVNPKFGEIFAYEPQQLIESR-- 184

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
             +LL+     D   +    L        +        + +      +         +  
Sbjct: 185 --SLLELVAPEDQIRVMTRFLRPLMEESDSLHFFFRGKRRDGS---LIDLEVNGTRTRVN 239

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
            +    G   +  + +  + ++     +L   +E +   + I +  G I   N    ++ 
Sbjct: 240 GSAAIIGTLLDITERKRAEAEL----SKLWRAVEQSPVSVVITDLFGRIEYVNPKFIEVT 295

Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
           GY  E+++ K  ++     T + +   L   ++               K  +L      I
Sbjct: 296 GYAEEELIGKNPSILKSGMTDAKVYEELWSTVTSGREW--HGELHNKKKNGELFWENGHI 353

Query: 546 KKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
             +  +      +     D++E K   ++L   +K+              ++H+    LT
Sbjct: 354 SAIKNAEGQITHFVGVKEDVTERKLAIDQLRQVQKM-----EAIGQLAGGIAHDFNNLLT 408

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
            I G+S ++        G+P + E A  I R+G    D+   LL  S+    +  +    
Sbjct: 409 VINGYSTLLVRSLD--KGSPTHKE-AEQILRAGERAADLTRQLLSFSR----RQIMEPRV 461

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           + +++ V     +++    E  I + T+ + +   I  D   ++QI +N++ NA   + +
Sbjct: 462 LDINKQVRAVQKMLERLIGEH-IGLVTTLSEDAGFIRMDPGQMEQIVMNLIVNARDASET 520

Query: 722 GGQIIISTTHTS--------------NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
           GG I ++T                     V L V D G GMT    ++  +PF       
Sbjct: 521 GGVITMATEKVDLDQNFSHLHPGSVPGSYVRLSVADQGQGMTEEVKQRLFEPFFTTK--- 577

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
              G GTGLGL     +V  + G   + S P +G    I  P
Sbjct: 578 -EMGRGTGLGLATVYGIVKQSGGYIEVVSEPGQGACFNIYLP 618



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/218 (9%), Positives = 51/218 (23%), Gaps = 5/218 (2%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL-HIDPNNHIGDLLKRQNTWYGKT 147
            D  G ++ ++ +  +  G    ++IG     +   +        +   +     W+G+ 
Sbjct: 278 TDLFGRIEYVNPKFIEVTGYAEEELIGKNPSILKSGMTDAKVYEELWSTVTSGREWHGEL 337

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                 G       +     I +   + + F   G+              +++ K  +  
Sbjct: 338 HNKKKNGELF--WENGHISAIKNAEGQITHF--VGVKEDVTERKLAIDQLRQVQKMEAIG 393

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
                           I    +       K   +        +      +    L S   
Sbjct: 394 QLAGGIAHDFNNLLTVINGYSTLLVRSLDKGSPTHKEAEQILRAGERAADLTRQLLSFSR 453

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
               +     IN      ++    L          LS 
Sbjct: 454 RQIMEPRVLDINKQVRAVQKMLERLIGEHIGLVTTLSE 491


>gi|308173366|ref|YP_003920071.1| sporulation-specific ATP-dependent protein histidine kinase
           [Bacillus amyloliquefaciens DSM 7]
 gi|307606230|emb|CBI42601.1| sporulation-specific ATP-dependent protein histidine kinase
           [Bacillus amyloliquefaciens DSM 7]
          Length = 606

 Score =  307 bits (786), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 101/505 (20%), Positives = 194/505 (38%), Gaps = 32/505 (6%)

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
                 +    G       V+  P P +V  +G + YAN + L +    S D +      
Sbjct: 130 RKAEQQSAEAAGNGEFERLVEMLPNPLYVSINGTIAYANNAMLAMLGADSKDAVIGRQSY 189

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
                  +  D    + V + +             T +      + +         +   
Sbjct: 190 E--FIEEEYHDIVKNRIVRMQKGME----VGMIEQTWRRLDGTPVHLEVKAAPTTYK--N 241

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
              +  +  +    +  +  ++    +   +++ + D IA+I      +  N +   LF 
Sbjct: 242 QRAELLLLIDISSRKKFQTILQKSRERYQLLIQNSIDTIAVI-HNDKWVFMNESGISLFE 300

Query: 487 Y-PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS-LRII 544
               ED++ K     L       +   +  I+       + K +  + K   + + +  I
Sbjct: 301 AETYEDLIGKNVYDQLHPCDHDGVKQRIRNIIDRKTESEIIKQSWFTFKNRLIYTEMVCI 360

Query: 545 IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
                      + + DISE KQ +  +  ++K++           A ++HEIR PLTAI 
Sbjct: 361 PTTFFGEMAVQVILRDISERKQTEELMLKSEKLSIA-----GQLAAGIAHEIRNPLTAIK 415

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           GF +++K              Y   +    + +  I+++LL  +K +   +    E V+L
Sbjct: 416 GFLQLMK------PTMEENEHYFEIVFSELSRIELILSELLMFAKPQHNAVK---ERVNL 466

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724
            + +SE  +L++  AN K I I+T +  +   I  D   +KQ+ +N++ NA+   P GG 
Sbjct: 467 KKIISEVTALLETQANLKGIFIKTDYERDSMFINGDQNQLKQVFINLIKNAVESMPDGGT 526

Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
           + I         V + V+D G G+    L++  +PF         + +GTGLGL +   +
Sbjct: 527 VHI-LMTEDEYSVNVTVKDEGDGIPENVLKRIGEPFLTT------KEKGTGLGLMVTFNL 579

Query: 785 VDANMGKFYIFSTPAKGTLIEIIFP 809
           +  + G   + S P KGT   I FP
Sbjct: 580 IKNHQGAIQVDSKPDKGTAFHITFP 604



 Score = 38.1 bits (87), Expect = 6.1,   Method: Composition-based stats.
 Identities = 20/197 (10%), Positives = 58/197 (29%), Gaps = 11/197 (5%)

Query: 272 QEDFHTINLNQYTKK--QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
           ++ +  ++      +      T +N   E    +   +         +        +   
Sbjct: 217 EQTWRRLDGTPVHLEVKAAPTTYKNQRAELLLLIDISSRKKFQTILQKSRERYQLLIQNS 276

Query: 330 PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389
                V  +    + N S + L + ++ +D+        L           I+ ++  ++
Sbjct: 277 IDTIAVIHNDKWVFMNESGISLFEAETYEDLIGKNVYDQLHPCDHDGVKQRIRNIIDRKT 336

Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449
                   + +    W    +  +          F   M    I  +  + +  + ++ +
Sbjct: 337 -------ESEIIKQSWFTFKNRLIYTEMVCIPTTFFGEMAVQVILRDISERKQTE-ELML 388

Query: 450 EVMQLCSILEATSDGIA 466
           +  +L SI    + GIA
Sbjct: 389 KSEKL-SIAGQLAAGIA 404


>gi|291566270|dbj|BAI88542.1| two-component hybrid sensor and regulator [Arthrospira platensis
           NIES-39]
          Length = 728

 Score =  307 bits (786), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 126/576 (21%), Positives = 216/576 (37%), Gaps = 87/576 (15%)

Query: 315 FDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
             + ++     +++      ++     L   NP    +    SVD +     L  +    
Sbjct: 3   IQQLKDEQILILNEIDQAIALFDSSDRLILFNPQLASIWGI-SVDQLAAQPSLDEICAEI 61

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
                 +       R              IQ + +  L +         +          
Sbjct: 62  TSQKLWSKPEWEHLRQTLRDSVRGEISFCIQQHNQIYLEVHSHTTPSGRR-------LLT 114

Query: 434 EPEDVDTRINKRKMEIEVMQLCSIL---EATSDG-----IAIINREGIILSTNRAVS--- 482
             +  D R  +  +  EV +L  +L   E   D      IA      ++ +TN A     
Sbjct: 115 FRDITDYRNTQLSLNTEVRRLRFLLGLNERLQDSDNLDKIAQFALNYLVHTTNAAFGDVK 174

Query: 483 --------KLFGYPVEDILRKPFTVFLEQNTP----------SVMNHYLTEILSLDLRQT 524
                   ++ G     I  +    + E                    L +++       
Sbjct: 175 VILGEGENRITGMLGNQISGQFIATYGEPAVAEMKALLSQGIPYGEGLLWDVVRTGEPIF 234

Query: 525 LEKITLG-------STKEEKLLSLRIIIKKLPFSSCYSLT-MHDIS-------------- 562
           ++                   L +  I                D++              
Sbjct: 235 VQDYANHPKAFSPFRHPGIGQLGIFPIPATNGEIIGVLTLESRDLTKMQEYPQLDMLFAA 294

Query: 563 --------EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                   E  Q +  L  + +  E+ S  KS+FLA +SHE+RTPL +++GF++++K Q 
Sbjct: 295 CRTLGTAIERAQAQENLRQSNEKLERASQLKSEFLASMSHELRTPLNSVLGFADLLKRQN 354

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
            G L N R +    +I++SG  +L ++ND+LD+SKIESGK  L+ E V++ E  SE + +
Sbjct: 355 SGTL-NSRQLNQVQFIEKSGLHLLQLINDILDLSKIESGKTELNLELVNIHELCSECLKM 413

Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH--- 731
           VQ  A++K + +       I + L D R V+QI +N+LSNAI FTP GG++ +S      
Sbjct: 414 VQPRADKKCLALSLESDYRITQALLDKRRVRQIIINLLSNAIKFTPEGGKVRLSGHLAYG 473

Query: 732 ---------------TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
                           S   + L V+D+G+G+         +PF QI +S   R EGTGL
Sbjct: 474 SQIDGDYRPDCSPINDSTPYLCLEVQDSGIGIPQDRWHLLFQPFQQIDSSLTRRHEGTGL 533

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
           GL L K + + + G   + S   +G+   +  PL +
Sbjct: 534 GLLLTKRLAELHGGTVSLQSQVNQGSRFRVWLPLTE 569


>gi|209551534|ref|YP_002283451.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|209537290|gb|ACI57225.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 861

 Score =  307 bits (786), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 134/728 (18%), Positives = 259/728 (35%), Gaps = 39/728 (5%)

Query: 107 GNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAAL 166
           GN   +++G    +       +       L  R      K      +G       D+   
Sbjct: 149 GNARPELLGQLPPETGAPQDGEFLAFGLWLKSRSAADLEKAIDRLRDGAQ---SFDMVVE 205

Query: 167 PIYSR----NREFSGFRGFGIVHVNRVDNDPRALGKRLDKK-------FSHLHEIKKGHS 215
            I           SG R F             A  +    +       F  + +     +
Sbjct: 206 TIRDEILEAQGRVSGGRAFVRFVALNNLRAELAELRIERDRLMTSISAFQTMLDAIDMPA 265

Query: 216 SVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDF 275
                   +                             +  E+     + ES  P  +  
Sbjct: 266 WQRDPAGRLTWVNQAYGEAVEARSPQQAINEGREMLTTVARERIRATVTPES--PFHDTI 323

Query: 276 HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV 335
            T+     T       ++     +   +   +  ++ A  +       ET+D    P  +
Sbjct: 324 STVVHGNRTFFDVV-DVRLPGGSAGIAIDVSDIEAVRAELERTLKSHAETLDHLATPVAI 382

Query: 336 YSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394
           +     L + N +F+ L +   +  +E     S LL+  + +     +            
Sbjct: 383 FDGDRRLQFYNQAFVALWEL-DIAFLEGRPDNSELLERLRAAKKLPDQLNWKSWK----- 436

Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
              A L   +     S  +  +P  +  +        G      +    +  +E     L
Sbjct: 437 --EAALSVYRALDTQS-DLWHLPNGQTLRVFATAHPQGGATWVFENLTEQVDLETRYNTL 493

Query: 455 CSI----LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
             +    ++  S+G+A+   +G I  +N A   L+G    +         L +      +
Sbjct: 494 VKVQGETIDHLSEGVAVFGPDGRIRLSNPAFRALWGITETEAKPGTHIRALGEACAPSYD 553

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLS---LRIIIKKLPFSSCYSLTMHDISEWKQE 567
                    +L  + +          +L S   L   +  LP +    LT  ++++  + 
Sbjct: 554 RPDGWKAFAELITSFDDERRSGQGTLELFSGLVLDYAVIPLPNAQ-TMLTFVNMTDSVRA 612

Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
           +  L+   +   K    K+DF+  VS+E+R+PLT IIGF+++++ Q  GPL N R  EY 
Sbjct: 613 ERALTEKNEALRKADELKNDFVQHVSYELRSPLTNIIGFTDLLRTQGVGPL-NERQAEYI 671

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
           ++I  S +++L +VND+LD++ +++G M L++  + L++ + +    +    +E  + + 
Sbjct: 672 DHISTSSSVLLTLVNDILDLATVDAGIMRLNYADIDLNDLLDDVSMQIADRLHESGVALE 731

Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747
            +    +  I+AD + +KQI L +LSNA +F+P G  I +   H    + +  V D G G
Sbjct: 732 ITAPAYLGSIVADPQRLKQILLKLLSNAANFSPEGTSISLEC-HREGTDFVFSVSDRGPG 790

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           ++   +      F     S +    G GLGL +  + V  + G   I S P KGT +   
Sbjct: 791 ISPDMIATVFDRFATGAKSGKR--GGAGLGLSIVDSFVSLHHGDVTIDSEPGKGTTVVCR 848

Query: 808 FPLYDTSH 815
            P  D  H
Sbjct: 849 IPSVDIPH 856



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/384 (10%), Positives = 104/384 (27%), Gaps = 34/384 (8%)

Query: 87  WNIDAHGYLKEISEELPKTI-GNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
           W  D  G L  +++   + +      + I      ++ +        I   +  ++ ++ 
Sbjct: 266 WQRDPAGRLTWVNQAYGEAVEARSPQQAINEGREMLTTV----ARERIRATVTPESPFHD 321

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
            T    + G   +  +    LP         G  G  I          RA  +R  K  +
Sbjct: 322 -TISTVVHGNRTFFDVVDVRLP--------GGSAGIAI--DVSDIEAVRAELERTLKSHA 370

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP----- 260
              +      ++      +         + +     +  E      ++L+  +       
Sbjct: 371 ETLDHLATPVAIFDGDRRLQFYNQAF--VALWELDIAFLEGRPDNSELLERLRAAKKLPD 428

Query: 261 ---LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS----KESFEYLSHRNHPSLSA 313
                + +E++L       T +   +        +   +      ++ + +      L  
Sbjct: 429 QLNWKSWKEAALSVYRALDTQSDLWHLPNGQTLRVFATAHPQGGATWVFENLTEQVDLET 488

Query: 314 YFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
            ++    +  ET+D       V+   G +  +NP+F  L      +     G     L  
Sbjct: 489 RYNTLVKVQGETIDHLSEGVAVFGPDGRIRLSNPAFRALWGITETEA--KPGTHIRALGE 546

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
                 +       +    T      R         + L + +      N        N 
Sbjct: 547 ACAPSYDRPDGWKAFAELITSFDDERRSGQGTLELFSGLVLDYAVIPLPNAQTMLTFVNM 606

Query: 433 IEPEDVDTRINKR-KMEIEVMQLC 455
            +    +  + ++ +   +  +L 
Sbjct: 607 TDSVRAERALTEKNEALRKADELK 630


>gi|153870226|ref|ZP_01999670.1| Signal transduction histidine kinase [Beggiatoa sp. PS]
 gi|152073308|gb|EDN70330.1| Signal transduction histidine kinase [Beggiatoa sp. PS]
          Length = 623

 Score =  307 bits (786), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 91/249 (36%), Positives = 138/249 (55%), Gaps = 3/249 (1%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E    KN+  HA+++AE+ +  KS FLA +SHE+RTPL AI+G+SE+++ +    LG   
Sbjct: 107 ELLHAKNQAEHAQRLAEEANVTKSQFLANMSHELRTPLNAILGYSEILQEEA-EELGQSE 165

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
            I     I  +G  +L+++ND+LDISKIE+GKM+L  E   L   + E IS +Q    +K
Sbjct: 166 CISDLQRIYSAGKHLLELINDVLDISKIEAGKMDLSLETFDLAIVIKEVISNIQPQVEKK 225

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-EVILRV 741
             ++    A+ +  +L+DL  ++Q+ LN+LSNA  FT  G  I I       E      V
Sbjct: 226 ANILEVKIADPLGTMLSDLTKLRQMLLNLLSNAAKFTEQG-TISIEVKREQEETWFCFMV 284

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            D G+GMT  + +K  +PF Q   S   R  GTGLGL + K   +   G   + S   KG
Sbjct: 285 TDNGIGMTEEQQKKVFQPFTQADASTTRRFGGTGLGLAITKQFAEMMGGYILVNSEFGKG 344

Query: 802 TLIEIIFPL 810
           +  +++ P+
Sbjct: 345 STFKLLLPI 353


>gi|327478668|gb|AEA81978.1| signal transduction histidine kinase [Pseudomonas stutzeri DSM
           4166]
          Length = 803

 Score =  307 bits (786), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 106/683 (15%), Positives = 226/683 (33%), Gaps = 41/683 (6%)

Query: 152 IEGTNLYVPIDLAALPIY--SRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
            +G NL     +   P    S  RE     G  ++ +           ++   + + L  
Sbjct: 130 PDGHNLGTLCVIDRKPRRLSSEQRETLERLGRQVIRLFEQHLLAHRHAEQAALQQAILDS 189

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
                     +        +    L    +  +              E+   L S E  +
Sbjct: 190 ASSAVLITRPDGIVTSVNPTAERLLGYSEQALAGHPLTTALFRHEALERRAKLLSSELEM 249

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
           P +  F  +    +  ++     +   +   E        ++    ++         D  
Sbjct: 250 PVEAGFAVLTAPLHLGRREMSEWRLRHQSGSEVPVLLGVTAIHDEQEQLRGYLINAYDLA 309

Query: 330 PIPFFVYSHGNLFYANPSFLLLTKYKS---------VDDIEIAGGLST-LLDAPKLSDNN 379
                      +    P  L    ++           + +E   GLS   L +       
Sbjct: 310 YQEQLQLRLQQIAAQVPGMLFQFHWRGNGSSCFPYVSEGVEQIYGLSPGQLASSFAPIVG 369

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRE-----NSLAMTFIPFEKANQFPENMPQNGIE 434
            +  +       +   A+A L               L           Q   ++  +G  
Sbjct: 370 RVHALDRSTLLSSIRKAAAELTPWHSEHRVDHPRKGLIWVEARATPLRQVDGSVLWHGFV 429

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI-- 492
            +    +  + +++ +      +LEA S+ +   + EG +   N    +  G     +  
Sbjct: 430 TDITARKAEQLELDKQQEMNRRLLEALSEAVIACDAEGNLTLFNEKAKQWHGADAAPVSP 489

Query: 493 --LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
                 + ++       +    +    +L     ++   +  ++     +L         
Sbjct: 490 DEWASHYQLYRADGVTPLQPEEIPLRRALGGEHVIDHEMVLLSQGTPRHALSNADPLYTS 549

Query: 551 SS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
                     +HDI+E K+ +                + +F++ VSHE+RTPLT+I G  
Sbjct: 550 DGQLLGAVAVLHDITERKRIE--------------RLQREFISTVSHELRTPLTSITGAL 595

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
            ++ +   G +   +  E  +   ++   +  +++DLLD+ K+ +GKM        L   
Sbjct: 596 ALVCSNVMGEVPG-QMRELLDIAQQNSQRLGALIDDLLDMDKLHAGKMRFDLLEQPLLPQ 654

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727
           +  A+     YA    + +R      + ++  D   ++Q+  N+LSNA  F+P G Q+ +
Sbjct: 655 LELALRSNGSYAERHGVQLRLGDCPAV-QVEIDAMRLQQVLSNLLSNAAKFSPPGEQVEL 713

Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
                    V + VRD G G+++   E+  + F Q  +S   +  GTGLGL ++K +++ 
Sbjct: 714 LARMRD-GHVRVSVRDRGPGISDEFRERVFQKFAQADSSDSRQQGGTGLGLAISKELIEH 772

Query: 788 NMGKFYIFSTPAKGTLIEIIFPL 810
             G+    S P +G       P+
Sbjct: 773 MGGQIGFESAPGQGACFWFELPV 795



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/405 (7%), Positives = 92/405 (22%), Gaps = 32/405 (7%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTW------- 143
             G +  ++    + +G     + G  L   + +   +       LL  +          
Sbjct: 199 PDGIVTSVNPTAERLLGYSEQALAGHPLT--TALFRHEALERRAKLLSSELEMPVEAGFA 256

Query: 144 ---------YGKTTLWPIE-GTNLYVPIDLAALPIYSRNREFSGFRGFGI-VHVNRVDND 192
                      + + W +   +   VP+ L    I+    +  G+      +        
Sbjct: 257 VLTAPLHLGRREMSEWRLRHQSGSEVPVLLGVTAIHDEQEQLRGYLINAYDLAYQEQLQL 316

Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD 252
                             +   SS      +   Q       ++ +  + +       D 
Sbjct: 317 RLQQIAAQVPGMLFQFHWRGNGSSCFPYVSEGVEQIYGLSPGQLASSFAPIVGRVHALDR 376

Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES---FEYLSHRNHP 309
                      +E +    +             +     L+                   
Sbjct: 377 STLLSSIRKAAAELTPWHSEHRVDHPRKGLIWVEARATPLRQVDGSVLWHGFVTDITARK 436

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
           +     D+ + +    ++            GNL   N          +            
Sbjct: 437 AEQLELDKQQEMNRRLLEALSEAVIACDAEGNLTLFNEKAKQWHGADAAPVSPDEWASHY 496

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
            L           + + L R+             +        A++           + +
Sbjct: 497 QLYRADGVTPLQPEEIPLRRALGGE-HVIDHEMVLLSQGTPRHALS-NADPLYTSDGQLL 554

Query: 429 PQNGIEPEDVDTRINKRKMEIE-----VMQLCSILEATSDGIAII 468
               +  +  + +  +R ++ E       +L + L + +  +A++
Sbjct: 555 GAVAVLHDITERKRIER-LQREFISTVSHELRTPLTSITGALALV 598



 Score = 68.5 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 34/309 (11%), Positives = 74/309 (23%), Gaps = 26/309 (8%)

Query: 277 TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY 336
                           +  S+ +             + FD+   L  +  D  PI     
Sbjct: 2   ESPQAIPAPMPSAAQPRELSRLAALLRYEILDTPEESAFDDFTALAAQMCDT-PIALISL 60

Query: 337 SHGNLFYANPSFLLLTKYKSVDDIEIAGGL--STLLDAPKLSDNNAIKPVMLYRSDRTCI 394
                 +      L       D       +    + + P    +   +   L + D    
Sbjct: 61  VDDRRQWFKSRVGLDVSETPRDISFCTYTITGEQIFEVPDALQDPRFRDNPLVQGDPHIR 120

Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
              A       +  N   +  I  +      E           V     +  +     + 
Sbjct: 121 -FYAGTPLTSPDGHNLGTLCVIDRKPRRLSSEQRETLERLGRQVIRLFEQHLLAHRHAEQ 179

Query: 455 ----CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV-FLEQNTPSVM 509
                +IL++ S  + I   +GI+ S N    +L GY  + +   P T            
Sbjct: 180 AALQQAILDSASSAVLITRPDGIVTSVNPTAERLLGYSEQALAGHPLTTALFRHEALERR 239

Query: 510 NHYLTEILSLDLRQTLEK-------------ITLGSTKEEKLLSLRIIIKKLPFS----S 552
              L+  L + +                         +    + + + +  +        
Sbjct: 240 AKLLSSELEMPVEAGFAVLTAPLHLGRREMSEWRLRHQSGSEVPVLLGVTAIHDEQEQLR 299

Query: 553 CYSLTMHDI 561
            Y +  +D+
Sbjct: 300 GYLINAYDL 308


>gi|114765161|ref|ZP_01444305.1| sensory box histidine kinase/response regulator [Pelagibaca
           bermudensis HTCC2601]
 gi|114542436|gb|EAU45463.1| sensory box histidine kinase/response regulator [Roseovarius sp.
           HTCC2601]
          Length = 812

 Score =  307 bits (786), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 88/464 (18%), Positives = 170/464 (36%), Gaps = 16/464 (3%)

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
           G    L          A +  +L R   T       L + +     ++ +  +       
Sbjct: 109 GPRDELRANLDDLAAQADEMRVLVRKIATTGLQHFALESDELRTSVAVTLLRLAVLTGLL 168

Query: 424 FPENMPQNGIEPEDVDTRINK-RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
                               + +++ I   +L +IL  + D + + +  G I + N A  
Sbjct: 169 LLALAALLMHARRTAQQTEKRGKELAIAYARLNTILNTSLDAVVVTDTTGRIQNFNPAAE 228

Query: 483 KLFGYPVEDILRKPFTVFLEQNT-PSVMNHYLTEILSLDLRQTLEK---ITLGSTKEEKL 538
           ++F   ++D+  K     +            +    +    + + +            + 
Sbjct: 229 RIFDCRLKDVRGKRVGDIIVPEHLRDAHEAGMARFAADGEHRVIGQGRVKLEAMRSNGET 288

Query: 539 LSLRIII--KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
             + + I              + DIS     +N+L  A+  A      K++FLA ++HEI
Sbjct: 289 FPVELAIETAHAGDEQLMVAFLRDISHRLAAENELVQARDKALAGEQAKAEFLAMMTHEI 348

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTPL  I+G   ++++ +           Y   +  SG L++  V+ +LD+++ ESG   
Sbjct: 349 RTPLNGILGNLSLMEDTKLSS----DQSRYMRNMKISGELLMRHVDAVLDVARFESGADK 404

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTS-FANNIPRILADLRSVKQIALNILSNA 715
              +   L     + +      A+     ++          +  D   ++QI LN++ NA
Sbjct: 405 AQEDVTHLGHLFQDIVDSQTSAAHAHGNALQWGWVGTPEEWVEVDSSRLQQILLNLVGNA 464

Query: 716 IHFTPSGGQIIISTTHTSNEE---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           I FT  G +I I        E   + +RV DTG G+   +L +  + F  + +       
Sbjct: 465 IKFTREG-RISIEAEVIEQGEPAKIEIRVSDTGSGIAEGDLARIFEDFQTVSHQVSDSVG 523

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           GTGLGL + +  V A  G   + ST  +G+   +  P+     P
Sbjct: 524 GTGLGLGIVRRFVQAMDGVIGVESTLGEGSTFWLRIPVLPVERP 567



 Score = 41.6 bits (96), Expect = 0.55,   Method: Composition-based stats.
 Identities = 23/268 (8%), Positives = 68/268 (25%), Gaps = 22/268 (8%)

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY 246
            R D    A    +  + + +  +  G     +   D  + Q+    + ++   ++  ++
Sbjct: 83  LREDPAFDAPLTEVRDRLNAMIPLIDGPRDELRANLDDLAAQADEMRVLVRKIATTGLQH 142

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
           +A + D L        +   + L        + L       +       +++  + L+  
Sbjct: 143 FALESDEL------RTSVAVTLLRLAVLTGLLLLALAALLMHARRTAQQTEKRGKELAIA 196

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGG 365
                              ++       V    G +   NP+   +   +  D      G
Sbjct: 197 Y------------ARLNTILNTSLDAVVVTDTTGRIQNFNPAAERIFDCRLKDVRGKRVG 244

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
              ++    L D +         +D            ++  R N          +     
Sbjct: 245 --DIIVPEHLRDAHEAGMARFA-ADGEHRVIGQGRVKLEAMRSNGETFPVELAIETAHAG 301

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
           +         +       + ++     +
Sbjct: 302 DEQLMVAFLRDISHRLAAENELVQARDK 329



 Score = 38.1 bits (87), Expect = 7.2,   Method: Composition-based stats.
 Identities = 20/264 (7%), Positives = 64/264 (24%), Gaps = 15/264 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI-DPNNHIGDLLKRQNTWY--- 144
            D  G ++  +    +        + G R+ D+    H+ D +                 
Sbjct: 214 TDTTGRIQNFNPAAERIFDCRLKDVRGKRVGDIIVPEHLRDAHEAGMARFAADGEHRVIG 273

Query: 145 -GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
            G+  L  +       P++LA    ++ + +         +              +   K
Sbjct: 274 QGRVKLEAMRSNGETFPVELAIETAHAGDEQLM----VAFLRDISHRLAAENELVQARDK 329

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK-----DDVLKTEK 258
                + K    ++   +              M++   S  +    +      ++L    
Sbjct: 330 ALAGEQAKAEFLAMMTHEIRTPLNGILGNLSLMEDTKLSSDQSRYMRNMKISGELLMRHV 389

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
             +L          +    +    +  +    +  + +      L      +   + +  
Sbjct: 390 DAVLDVARFESGADKAQEDVTHLGHLFQDIVDSQTSAAHAHGNALQWGWVGTPEEWVEVD 449

Query: 319 ENLTPETVDKC-PIPFFVYSHGNL 341
            +   + +             G +
Sbjct: 450 SSRLQQILLNLVGNAIKFTREGRI 473


>gi|330802602|ref|XP_003289304.1| hypothetical protein DICPUDRAFT_153663 [Dictyostelium purpureum]
 gi|325080602|gb|EGC34150.1| hypothetical protein DICPUDRAFT_153663 [Dictyostelium purpureum]
          Length = 1824

 Score =  307 bits (786), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 87/346 (25%), Positives = 156/346 (45%), Gaps = 26/346 (7%)

Query: 492  ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
               K     +  +  +     + + +       +E       K    L + +  K +   
Sbjct: 1042 WNMKYLAELIHPDDKTKFISEIKKTI-TGESSIMEIECRMRKKYGGYLYIIMRGKVVSNE 1100

Query: 552  S-------CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
            +         + T+ D++  K  +  L   K+ AE+ +  KS F+A VSHE+RTPL+ +I
Sbjct: 1101 TSFKDSSLRMAGTLRDMTSRKDMQR-LIFEKEAAEEANKAKSAFVATVSHEVRTPLSGVI 1159

Query: 605  GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
            G S+++         +    +Y   I +S   +L I+ND+LD SK+ES ++ +   P S+
Sbjct: 1160 GVSDLLLETNL----SEEQRDYVQTIQKSSQALLTIINDILDYSKLESRQLKMETLPFSI 1215

Query: 665  DEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG 723
             E     I ++ + AN++ + I      N+P+ +  D   ++Q+ LN+LSNAI FT  G 
Sbjct: 1216 IETCQAVIHMLSVAANDE-VDILLRVPPNVPKIVFGDAMRIRQVLLNLLSNAIKFTSRGH 1274

Query: 724  QII-IST--------THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
             +  IS         +      + + + DTG+G+     +   +PF Q  NS   +  GT
Sbjct: 1275 ILTDISVDESVPTSNSEEDIIHLCITIEDTGIGIPQSLFDSIFEPFSQADNSTTRKYGGT 1334

Query: 775  GLGLPLAKAMVDA-NMGKFYIFSTPAKGTLIEIIFP-LYDTSHPHD 818
            GLGL + K +++    G   + S   +G+  + I P L   + P D
Sbjct: 1335 GLGLSITKRLIEEVMGGTIQVSSIVNQGSTFKCIIPFLLPNTSPSD 1380


>gi|320156917|ref|YP_004189296.1| signal transduction histidine kinase [Vibrio vulnificus MO6-24/O]
 gi|319932229|gb|ADV87093.1| signal transduction histidine kinase [Vibrio vulnificus MO6-24/O]
          Length = 716

 Score =  307 bits (786), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 95/490 (19%), Positives = 194/490 (39%), Gaps = 32/490 (6%)

Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
           +L +T+   ++          L   P +                     SA+   +    
Sbjct: 13  WLSITQEGWIEAYNQQAQSCELWHQPLMVGEALTCVHPSRIFYEWVKQLSAQSPPLSIMS 72

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
             +   T     +     +   Q  +  + +  R    ++  ++ +L    +  + GI  
Sbjct: 73  TRATHWTLSASPRTQGGFDLWLQEAVCDDAL--RDENTRLRRDIERLDFAAQGANLGIWD 130

Query: 468 INRE-----GIILST-------NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
            N       G            N   +    +       + ++  +  +  +     +  
Sbjct: 131 FNPSTGCIIGNKTWAIQKKLEPNHLFADDALFSEIINGIEKWSEIVHPDDVAETTDKIQA 190

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLS-LRIIIKKLPFSSCYSL----TMHDISEWKQEKNK 570
            L     +           + +    L +            +       DI + K+ +  
Sbjct: 191 HL-DGETELYHAEFRVRCGDGQWKWILDLGRVFERDQDGVPVRMNGIHVDIDKLKRLQQS 249

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           LS  K  AE  +  KS FLA +SHE+RTPL A++G+++++   +       ++ EY + I
Sbjct: 250 LSETKDKAEVANRAKSIFLANMSHELRTPLNAVLGYTQLM---KCDQRLTAKHHEYLDII 306

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
           +RSG  +L ++ND+LD+SKI++G   +  +  +  E   E   L+Q+ A +K++ +    
Sbjct: 307 NRSGEHLLSLINDVLDMSKIDAGHSVVERKWFNFREVSEEINDLMQMKAMQKQLTLHCRV 366

Query: 691 ANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS----NEEVILRVRDTG 745
            +++P  +L D+   +Q+ +N+L NAI FT  G  + ++    +      +V   V DTG
Sbjct: 367 EDSVPHFVLGDVVKTRQVLINLLGNAIKFTYRG-NVRLNIASEALQNGQHKVTFEVSDTG 425

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G++    E+  +PF Q+ +       GTGLGL ++K  V+   G+  + S   +G+   
Sbjct: 426 IGISEENQERVFQPFEQLDSDITQN--GTGLGLSISKQFVELMGGQLVLKSELHRGSTFS 483

Query: 806 IIFPLYDTSH 815
               + +TS 
Sbjct: 484 FSL-VMETSE 492


>gi|322384029|ref|ZP_08057756.1| two-component sensor histidine kinase-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321151376|gb|EFX44566.1| two-component sensor histidine kinase-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 517

 Score =  307 bits (786), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 86/403 (21%), Positives = 165/403 (40%), Gaps = 28/403 (6%)

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
                 NQ    +    +     +    +++ E    +  S+ E   D I   +R G   
Sbjct: 138 HALLAQNQNDPFLRSYAVIYALYERNRAEKRWEESEQKYKSLFEHNPDAICSFDRAGRFT 197

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
             N A  ++ GY  +++L       +E           T  L                KE
Sbjct: 198 KVNPAAERITGYSADELLDMSIEDLIEPAELEKWTKQFTLSLEGITSTD---EVTFRNKE 254

Query: 536 EKLLSLRIIIKKLPFS---SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
            ++  L ++   +             +D++E K+ +  L  ++K++           A V
Sbjct: 255 GQIRILSVVYVPIIIEQVIRGVYWIANDVTERKRAEELLIKSEKLSVV-----GQLAAGV 309

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           +HEIR PLT++ GF ++++ +  G      Y  Y + +      +  IV++ L  +K + 
Sbjct: 310 AHEIRNPLTSLKGFVQLLQEKIDG------YDTYLDIMVSELERINFIVSEFLVFAKPQ- 362

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712
               +HF+P  L + +   ++L+   A    + I+      +P +  D   +KQ+ +N+L
Sbjct: 363 ---RVHFQPKDLHQMLKNTVALLNTKAIMSNVEIKDEIQELLPLVFCDENQIKQVFINVL 419

Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           +N+I   P GG I +        +V L   D GVG++   L +  +PF         + +
Sbjct: 420 NNSIEAMPEGGTIRLGGNCKD-GQVTLSFSDEGVGISENRLTRIGEPFYTT------KEK 472

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
           GTGLGL  +  +++ + G+  I S   KGT++ + FP+    H
Sbjct: 473 GTGLGLMASYKIMENHKGQIKITSEVNKGTIVHLRFPVLSGQH 515



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/114 (14%), Positives = 36/114 (31%), Gaps = 5/114 (4%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D  G   +++    +  G  A +++ M + D+ +   ++       L     T   + T 
Sbjct: 191 DRAGRFTKVNPAAERITGYSADELLDMSIEDLIEPAELEKWTKQFTLSLEGITSTDEVTF 250

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
              EG    + +    +PI        G     I +          L  + +K 
Sbjct: 251 RNKEGQIRILSVV--YVPIIIEQ-VIRGVYW--IANDVTERKRAEELLIKSEKL 299



 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/172 (9%), Positives = 52/172 (30%), Gaps = 12/172 (6%)

Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKY 354
            +      +          ++E E       +  P     +   G     NP+   +T Y
Sbjct: 150 LRSYAVIYALYERNRAEKRWEESEQKYKSLFEHNPDAICSFDRAGRFTKVNPAAERITGY 209

Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
            + + ++    +  L++  +L        + L   +             +        ++
Sbjct: 210 SADELLD--MSIEDLIEPAELEKWTKQFTLSL---EGITSTDEVTF---RNKEGQIRILS 261

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
            +      +         I  +  + +  + ++ I+  +L S++   + G+A
Sbjct: 262 VVYVPIIIEQV-IRGVYWIANDVTERKRAE-ELLIKSEKL-SVVGQLAAGVA 310


>gi|182412655|ref|YP_001817721.1| PAS/PAC sensor hybrid histidine kinase [Opitutus terrae PB90-1]
 gi|177839869|gb|ACB74121.1| PAS/PAC sensor hybrid histidine kinase [Opitutus terrae PB90-1]
          Length = 682

 Score =  307 bits (786), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 93/383 (24%), Positives = 162/383 (42%), Gaps = 32/383 (8%)

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV-MNHY 512
           L ++   +  G+ + +  G +   N   ++  GYP  ++  +   V +    P   +   
Sbjct: 11  LRTLATLSHSGVLVTDASGHVTWLNPRFTEQTGYPANELEGRRLDVVVRLLAPDSGVAAV 70

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNK 570
           +   L+    ++           E  + L +    L       + L   D++E ++    
Sbjct: 71  VARALAAGEPRSFTVAQASRDGRETWMQLALAPVVLRNGRKQGFVLVQDDLTEKREHYAM 130

Query: 571 LSHAKK---------------------IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
           L  A                        A   +  KS FLA +SHEIRTPL  +IG + V
Sbjct: 131 LRQANAAMEDLNTQFEHAIDRAQQLAMEAAVANQAKSAFLAMMSHEIRTPLNGVIGMTGV 190

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           ++        +    E    I  SG  +L +VND LD SKIE+G++ L      L     
Sbjct: 191 LEATEL----DDEQRECLRTIKMSGEALLAVVNDTLDYSKIEAGRLELEQVDFDLRGCAE 246

Query: 670 EAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
           EA  L+   A  K++ +    A + PR I+ D   ++QI +N+L NA+ FTP+G  ++  
Sbjct: 247 EAAELLAGKAFAKKLELVCDVAEDAPRRIIGDPVRLRQIFVNLLGNAVKFTPAGEIVLQI 306

Query: 729 TTHTSNEE---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
                + E   + L VRDTG+G+   +  +  + F Q+ +S   +  GTGLGL ++K + 
Sbjct: 307 RVLEFDGEAYALQLGVRDTGIGIAADKQHRLFQSFSQVDSSTTRQYGGTGLGLAISKRLA 366

Query: 786 DANMGKFYIFSTPAKGTLIEIIF 808
           +   G  ++ S   +G+      
Sbjct: 367 ELMGGTMWVESEVGRGSAFLFTI 389



 Score = 43.5 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 55/501 (10%), Positives = 114/501 (22%), Gaps = 64/501 (12%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID--PNNHIGDLLKRQNTWYGK 146
            DA G++  ++    +  G  A ++ G RL  V  +L  D      +   L         
Sbjct: 25  TDASGHVTWLNPRFTEQTGYPANELEGRRLDVVVRLLAPDSGVAAVVARALAAGEPRSFT 84

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP-----RALGKRLD 201
                 +G      + LA  P+  RN      +GF +V  +  +        R     ++
Sbjct: 85  VAQASRDGR--ETWMQLALAPVVLRNGR---KQGFVLVQDDLTEKREHYAMLRQANAAME 139

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSP----------PPHLRMKNKVSSLTEYYAHKD 251
              +           +  E       +S            P   +      L       +
Sbjct: 140 DLNTQFEHAIDRAQQLAMEAAVANQAKSAFLAMMSHEIRTPLNGVIGMTGVLEATELDDE 199

Query: 252 DV--------------------LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291
                                 L   K      E   +            +    + F  
Sbjct: 200 QRECLRTIKMSGEALLAVVNDTLDYSKIEAGRLELEQVDFDLRGCAEEAAELLAGKAFAK 259

Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLL 351
                 +  E    R             NL    V   P    V     L +   ++ L 
Sbjct: 260 KLELVCDVAEDAPRRIIGDPVRLRQIFVNLLGNAVKFTPAGEIVLQIRVLEFDGEAYALQ 319

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV-----------MLYRSDRTCIAASARL 400
              +       A     L  +    D++  +              L       +   + +
Sbjct: 320 LGVRDTGIGIAADKQHRLFQSFSQVDSSTTRQYGGTGLGLAISKRLAELMGGTMWVESEV 379

Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
                      A    P  +         +  +  +  D   ++  +   +    +    
Sbjct: 380 GRGSAFLFTIRARRADPITRPPPPQPLKGRRVLVVD--DNATSRDVLARHLRYFGA---- 433

Query: 461 TSDGIAIIN-REGIILSTN--RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
             + I + +  +G     N  R    L    + +     +   +           L  + 
Sbjct: 434 --EPICVASTTDGDARLANGERFALALVDQQMPEGAGDAWARAVATRGKPCPILLLHAVG 491

Query: 518 SLDLRQTLEKITLGSTKEEKL 538
                  ++ I     + E L
Sbjct: 492 ERTNEPAIDGIVHKPIRRESL 512


>gi|87310341|ref|ZP_01092471.1| PAS/PAC sensor signal transduction histidine kinase
           [Blastopirellula marina DSM 3645]
 gi|87286840|gb|EAQ78744.1| PAS/PAC sensor signal transduction histidine kinase
           [Blastopirellula marina DSM 3645]
          Length = 588

 Score =  307 bits (786), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 80/392 (20%), Positives = 172/392 (43%), Gaps = 24/392 (6%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
               ++  E   Q       +D R++  ++  E  +L ++L +  +G+  ++ +  +L  
Sbjct: 219 AAAEDELGETARQFSQMQAAIDLRVD--ELTGESNRLKTVLGSMVEGVIAVDAQQRVLLA 276

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
           N AV KL     ED + +P            ++      ++ D     E     + +  +
Sbjct: 277 NGAVRKLLAIRAEDPVGRPLLEL---TRNRSLDESFRAAIASDEPYRNEFEVSTTPR--R 331

Query: 538 LLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
            LSL+             + +HD++E ++ +              + + +F++ VSHE++
Sbjct: 332 TLSLQANRLPGEPCPGVVMVLHDVTELRRLE--------------NMRREFVSSVSHELK 377

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TPL A+  ++E ++      + N  Y  + + I  S + + +++ D+L +++IES +   
Sbjct: 378 TPLAAVRAYTETLQLGAIEDIENRGY--FLSQIMDSADRLHELIQDMLHLARIESREEAF 435

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
               V + + +   + + +  A  ++I +R         +L D   V+ I  N++ NA+ 
Sbjct: 436 DITEVPIADVIENVLQVQRDVAASRQIALRIHPPEVEISVLGDEEGVRTILGNLIDNAMK 495

Query: 718 FTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
           +TP GG + ++        V + V+DTG+G+    LE+  + F ++  ++     GTGLG
Sbjct: 496 YTPEGGSVDVAWGLE-GSHVAITVKDTGLGIPQAALERIFERFFRVDKARSREMGGTGLG 554

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           L + K    A  G   + S   +G+   +  P
Sbjct: 555 LSIVKHTAQAMNGGVTVESQVGEGSKFTVRLP 586



 Score = 41.9 bits (97), Expect = 0.41,   Method: Composition-based stats.
 Identities = 23/244 (9%), Positives = 59/244 (24%), Gaps = 24/244 (9%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +DA   +   +  + K +   A   +G  L +++    +D        +     +  +  
Sbjct: 267 VDAQQRVLLANGAVRKLLAIRAEDPVGRPLLELTRNRSLD--ESFRAAIASDEPYRNE-- 322

Query: 149 LWPIEGTNLYVPIDLAALPIYS---RNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
                        +++  P  +   +     G    G+V V     +     +RL+    
Sbjct: 323 ------------FEVSTTPRRTLSLQANRLPGEPCPGVVMVLHDVTE----LRRLENMRR 366

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
                              +++      +                 D L      +L   
Sbjct: 367 EFVSSVSHELKTPLAAVRAYTETLQLGAIEDIENRGYFLSQIMDSADRLHELIQDML-HL 425

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
                 +E F    +      +    +Q +   S +     + P +       E      
Sbjct: 426 ARIESREEAFDITEVPIADVIENVLQVQRDVAASRQIALRIHPPEVEISVLGDEEGVRTI 485

Query: 326 VDKC 329
           +   
Sbjct: 486 LGNL 489


>gi|196231772|ref|ZP_03130629.1| multi-sensor signal transduction histidine kinase [Chthoniobacter
           flavus Ellin428]
 gi|196224244|gb|EDY18757.1| multi-sensor signal transduction histidine kinase [Chthoniobacter
           flavus Ellin428]
          Length = 541

 Score =  307 bits (786), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 78/418 (18%), Positives = 160/418 (38%), Gaps = 18/418 (4%)

Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
              + T +   E    +      ++              E       +R+ E  + QL  
Sbjct: 136 EDEVQTRRTAEEKLRELNV--ELESRVASRTADLEAANAELRRLLEEQRRTEEALAQLAI 193

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           I++++ D I   + +G I S N    + FGY  ++ + +   +             L  I
Sbjct: 194 IVQSSGDAIISKDIDGKITSWNPGAERTFGYSAQEAIGQSMAIIFPPEKMDEEPQILERI 253

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLS 572
              ++    E   L   K    L + + +  +   S   +       DI+E KQ + ++ 
Sbjct: 254 RLGEVIGHFETERL--RKGGARLDVSVSVSPIRDISGNIIASSTIARDITESKQVEGQMR 311

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
                 E+ +     F    SH+++ PL A+    + +  + +G   + R +E+ ++   
Sbjct: 312 KMMTALERSNQELGQFAYVASHDLKEPLRAVTSCVQ-LLRKGYGDKLDGRGVEFIDHAVD 370

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
               +  +++ LL  S++E  +  L    V+L   V  A   ++    E  + +    A 
Sbjct: 371 GAKRMQQLIDGLLSFSRLEQQESELQL--VNLSAPVQHACENLETSIAEGNVQVH---AG 425

Query: 693 NIPRILADLRSVKQIALNILSNAIHFT-PSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751
            +P +      + Q+  N++ NA+ F      ++ I      N + +  VRD G+G    
Sbjct: 426 ALPTLKCHTSQMVQLFQNLIGNAVKFRRDQAPEVWIDAE-RKNGDWLFSVRDNGIGFEPE 484

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             E+    F ++    + +  GTG+GL + K +V+ + G+ +  S P  GT      P
Sbjct: 485 FNERIFGLFQRLH--TRRKYSGTGIGLAICKKIVERHQGRIWAESQPNHGTTFFFTLP 540



 Score = 61.2 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 15/132 (11%), Positives = 37/132 (28%), Gaps = 3/132 (2%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D  G +   +    +T G  A + IG  +  +     +D    I + ++         T 
Sbjct: 206 DIDGKITSWNPGAERTFGYSAQEAIGQSMAIIFPPEKMDEEPQILERIRLGEVIGHFETE 265

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
              +G    + + ++  PI   +          I              +++       ++
Sbjct: 266 RLRKG-GARLDVSVSVSPIRDISGNIIASS--TIARDITESKQVEGQMRKMMTALERSNQ 322

Query: 210 IKKGHSSVEKEK 221
                + V    
Sbjct: 323 ELGQFAYVASHD 334


>gi|170022784|ref|YP_001719289.1| aerobic respiration control sensor protein ArcB [Yersinia
           pseudotuberculosis YPIII]
 gi|169749318|gb|ACA66836.1| multi-sensor hybrid histidine kinase [Yersinia pseudotuberculosis
           YPIII]
          Length = 778

 Score =  307 bits (786), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 78/374 (20%), Positives = 162/374 (43%), Gaps = 16/374 (4%)

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
                + ++  +   L S L+A+ D +   N +      NR++  L G   + ++     
Sbjct: 142 HREQAQIELGQQSALLRSFLDASPDLVYYRNEDNEFSGCNRSMELLTGKSEKQLVGLTPK 201

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII--KKLPFSSCYSL 556
                +    +     ++   ++  T E+  +     +    LR +    ++        
Sbjct: 202 DVYAPDIAEKVMETDEKVFRHNVSLTYEQWLVYPDGRKACFELRKVPFYDRVGKRHGLMG 261

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
              DI+E K+ ++ L +        S  K+ F++ +SHE+RTPL  I+G S ++ +    
Sbjct: 262 FGRDITERKRYQDALEN-------ASRDKTTFISTISHELRTPLNGIVGLSRILLDTEL- 313

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
              +   ++Y   I  S   + +I ND++++ K+E  K+ L  +PV     +++  +L  
Sbjct: 314 ---DAEQLKYLKTIHVSAITLGNIFNDIIEMDKLERRKVQLDNQPVDFTGFMADLENLSG 370

Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
           L    K +         +P  ++AD   ++QI  N++ NA+ FT  G +I++      N+
Sbjct: 371 LLVQPKGLKFIMEPQLPLPEKVIADGTRLRQILWNLIGNAVKFTQQG-KIVVRVRREGND 429

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQI-PNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
            +I  V D+G+G+   E +K    + Q+   +      GTG+GL ++K +  +  G   +
Sbjct: 430 RLIFEVEDSGMGIPEDEQDKIFAMYYQVKDRNGGRPATGTGIGLAVSKRLAQSMGGDITV 489

Query: 795 FSTPAKGTLIEIIF 808
            ST   G+   +  
Sbjct: 490 KSTQGVGSCFTLTI 503



 Score = 40.4 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/124 (12%), Positives = 35/124 (28%), Gaps = 5/124 (4%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN-TWYGKTTLWPIE 153
               +  +    G    +++G+   DV      +      + + R N +   +  L   +
Sbjct: 177 FSGCNRSMELLTGKSEKQLVGLTPKDVYAPDIAEKVMETDEKVFRHNVSLTYEQWLVYPD 236

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
           G       +L  +P Y R  +  G  GFG           +   +   +  +        
Sbjct: 237 GRKACF--ELRKVPFYDRVGKRHGLMGFG--RDITERKRYQDALENASRDKTTFISTISH 292

Query: 214 HSSV 217
               
Sbjct: 293 ELRT 296



 Score = 38.9 bits (89), Expect = 3.6,   Method: Composition-based stats.
 Identities = 24/228 (10%), Positives = 55/228 (24%), Gaps = 14/228 (6%)

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ----EDFHTINLNQYTKKQYFGTLQNN 295
           +S + E        L      L       L       E+   +N     +++        
Sbjct: 73  LSVVVEQLEESRQRLSRLVDKLEVMRHRDLELNKQLTENITQLNQEIVEREKAEKAHLQV 132

Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKY 354
             +  E + HR    +     +   L    +D  P   +  +        N S  LLT  
Sbjct: 133 VDKLKEEMGHREQAQIE--LGQQSALLRSFLDASPDLVYYRNEDNEFSGCNRSMELLTGK 190

Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
                +        L      + + A K +           +      + +         
Sbjct: 191 SEKQLVG-------LTPKDVYAPDIAEKVMETDEKVFRHNVSLTYEQWLVYPDGRKACFE 243

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
                  ++  +     G   +  + +  +  +E       + +   S
Sbjct: 244 LRKVPFYDRVGKRHGLMGFGRDITERKRYQDALENASRDKTTFISTIS 291


>gi|146337252|ref|YP_001202300.1| putative sensor histidine kinase [Bradyrhizobium sp. ORS278]
 gi|146190058|emb|CAL74050.1| Putative sensor histidine kinase [Bradyrhizobium sp. ORS278]
          Length = 835

 Score =  307 bits (786), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 135/678 (19%), Positives = 241/678 (35%), Gaps = 39/678 (5%)

Query: 150 WPIEGTNLYVPIDLA-ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               G    + +  +    I +  R   G     IV   R  +  R        +F  L 
Sbjct: 168 LREAGEGFMLHLTTSHGHAIEAMGRAIGGQ---AIVR-IRELSGLRRELAETQLRFKALG 223

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE--------KYP 260
           E  +   ++          +     L   N   +         D +           +  
Sbjct: 224 EETESLRALASALPWPIWARHANGALAYVNAAYARAADARDIPDAISRNLELLDSADRSD 283

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
           L  +  +    +     +   +                     +        A     E 
Sbjct: 284 LQRALGAGGHFEGRLPIVMGGERRMHDVRAFTLGGGSAGVAIDASEAAALTDALVRMHEA 343

Query: 321 LTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
               T+D+      V+     L + N S+  L              L T     +  D++
Sbjct: 344 H-RRTLDQLSSGVAVFDGQRRLAFYNDSYRRLWD------------LDTAFLDSQPDDSS 390

Query: 380 AIKPVMLYRSDRTCIAASA---RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
            +  +   R         A   +LH      E +    F+P  +A          G    
Sbjct: 391 VLDRLRASRKLPEQADFRAWKAKLHEAYRAVEAAKDTWFLPDGRALSVVTTPNPEGGVTY 450

Query: 437 DVDTRINKRKMEIEVMQL----CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
             D       +      L       L++ ++G+A+    G +   N A +K++    + +
Sbjct: 451 LFDDVTESFALARRYDGLIRVQRETLDSLAEGVAVFGSNGRVELFNPAFAKMWRLSPDSL 510

Query: 493 LRKPFTVFLEQNTPSVMNHYLT-EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
              P    +E    S+ +  +    +   +     ++ +    E K  S+   + +    
Sbjct: 511 REHPHIDTVESWCRSIYDDSVAWRTIREAITSIENRLDVALKLERKDGSVLDCMSRPLPD 570

Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
               LT  DI++ +  +  L  + +  E     K DF+  VS+E+R PLT IIGF+  + 
Sbjct: 571 GATMLTFQDITDTENVERALRESNEALEAAGQMKIDFVHHVSYELRAPLTTIIGFAHFLS 630

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
           +   GPL  P+  EY +Y+ +S N +L + N++LD++ I++G M L   PV   +A+  A
Sbjct: 631 DPSTGPLT-PKQAEYLDYVTKSTNALLALTNNILDLATIDAGAMKLELGPVDAAKAIEAA 689

Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
              VQ      RI +R   A ++   + D R V Q+  N+L+NA+ F+P    +I+S   
Sbjct: 690 AEGVQDRLATDRIRLRVEVAPDVGSFVGDERRVVQVLYNLLANAVGFSPQDSTVIVSARR 749

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
           T +  V   V D G G+     ++    F  +  SQ  R  G GLGL L ++ V+ + GK
Sbjct: 750 TDH-SVAFAVTDCGPGIPADIKDQMFDWF--VSRSQGSRHRGAGLGLSLVRSFVELHGGK 806

Query: 792 FYIFSTPAKGTLIEIIFP 809
             + S   KGT +   FP
Sbjct: 807 VRMDSVVGKGTTVTCDFP 824



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 46/439 (10%), Positives = 102/439 (23%), Gaps = 43/439 (9%)

Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH 233
              GF     + + R          RL    + L      + ++   +  I        H
Sbjct: 67  ALLGFSVVAAIALVRTRLAAARKEARLRADVAELQLQADRYRALLFAEPQILIAWPAGGH 126

Query: 234 LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLN---------QYT 284
               +  +S+         +L    +             E                  + 
Sbjct: 127 RPQISGDTSMLVPSDQPQRILAFGSWLPPEPALQLDHAVEALREAGEGFMLHLTTSHGHA 186

Query: 285 KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD-----EGENLTPETVDKCPIPFFV-YSH 338
            +     +   +      LS                 E            P P +  +++
Sbjct: 187 IEAMGRAIGGQAIVRIRELSGLRRELAETQLRFKALGEETESLRALASALPWPIWARHAN 246

Query: 339 GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398
           G L Y N ++      + + D         LLD+   SD        L R+         
Sbjct: 247 GALAYVNAAYARAADARDIPD--AISRNLELLDSADRSD--------LQRALGAGGHFEG 296

Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458
           RL          +            F       G+  +  +       +          L
Sbjct: 297 RL--------PIVMGGERRMHDVRAFTLGGGSAGVAIDASEAAALTDALVRMHEAHRRTL 348

Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP-------SVMNH 511
           +  S G+A+ + +  +   N +  +L+      +  +P    +                 
Sbjct: 349 DQLSSGVAVFDGQRRLAFYNDSYRRLWDLDTAFLDSQPDDSSVLDRLRASRKLPEQADFR 408

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571
                L    R            + + LS+             +    D++E      + 
Sbjct: 409 AWKAKLHEAYRAVEAAKDTWFLPDGRALSVVTTPNP---EGGVTYLFDDVTESFALARRY 465

Query: 572 SHAKKIAEKESSHKSDFLA 590
               ++  +     ++ +A
Sbjct: 466 DGLIRVQRETLDSLAEGVA 484



 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 44/381 (11%), Positives = 97/381 (25%), Gaps = 31/381 (8%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYA-FKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144
            W   A+G L  ++    +          I   L  +      D    +   L     + 
Sbjct: 240 IWARHANGALAYVNAAYARAADARDIPDAISRNLELLDSADRSD----LQRALGAGGHFE 295

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI-----VHVNRVDNDPRALGKR 199
           G     PI         D+ A  +        G  G  I       +           +R
Sbjct: 296 G---RLPIVMGGERRMHDVRAFTLGG------GSAGVAIDASEAAALTDALVRMHEAHRR 346

Query: 200 LDKKFSHLHEIKKGHSSVE--KEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257
              + S    +  G   +    + Y               +  S L    A +    + +
Sbjct: 347 TLDQLSSGVAVFDGQRRLAFYNDSYRRLWDLDTAFLDSQPDDSSVLDRLRASRKLPEQAD 406

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQ-YFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
                     +    E           +      T       ++ +       +L+  +D
Sbjct: 407 FRAWKAKLHEAYRAVEAAKDTWFLPDGRALSVVTTPNPEGGVTYLFDDVTESFALARRYD 466

Query: 317 EGENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
               +  ET+D       V+ S+G +   NP+F  + +    D +     + T+    + 
Sbjct: 467 GLIRVQRETLDSLAEGVAVFGSNGRVELFNPAFAKMWRLSP-DSLREHPHIDTVESWCRS 525

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
             ++++    +  +  +          ++    + L     P                  
Sbjct: 526 IYDDSVAWRTIREAITSIENRLDVALKLERKDGSVLDCMSRPLPDGA-------TMLTFQ 578

Query: 436 EDVDTRINKRKMEIEVMQLCS 456
           +  DT   +R +      L +
Sbjct: 579 DITDTENVERALRESNEALEA 599


>gi|266622770|ref|ZP_06115705.1| putative response regulator receiver domain protein [Clostridium
           hathewayi DSM 13479]
 gi|288865493|gb|EFC97791.1| putative response regulator receiver domain protein [Clostridium
           hathewayi DSM 13479]
          Length = 1052

 Score =  307 bits (786), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 105/505 (20%), Positives = 200/505 (39%), Gaps = 37/505 (7%)

Query: 334 FVYSHGNLFYANPSFLLLTKYK--SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR 391
            V  H  + +AN  +  L  Y     + +             + S N   + +     + 
Sbjct: 297 LVDKHFTVLWANHFYYELIGYSKQEYEALFH-NHCDEYFQNNQDSWNAIHRKINQMYENG 355

Query: 392 TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV 451
              +    L  ++    ++  +  + F    +            +  D    +++     
Sbjct: 356 KK-SYEVFL-PLKIPDGSTCWVKMVGFFTDARQDGKQLAYTTMVDVTDMIQIQQE----- 408

Query: 452 MQLCSIL-EATSDGIA---IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
               +I  +     I    ++     ++  +  ++ +F   +  +        L+  + +
Sbjct: 409 ---KTIAYDNIPGFIVKYRVLPERLEMIEASDRITDIFDVDLSRLSALDCYSILQPESRA 465

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII---IKKLPFSSCYSLTMHDISEW 564
           V+       L    R+  E       K  +    +I    I  +     Y     DI++ 
Sbjct: 466 VLEANHPSFLR---REPFEGSICVKDKYGRDRWFQIHCACIDFVADDPVYLTVFIDITDI 522

Query: 565 KQEKN----------KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
            + +            L+ A + A++ +  KSDFL+R+SH+IRTP+  I G +E+  +  
Sbjct: 523 TELRELQSKLEERTVMLNTALEEAKQANEAKSDFLSRMSHDIRTPMNVIAGMTEIAGSHV 582

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
           + P    R  +    I  S + +L ++ND+LD+S+IE+G  +++  PVSL   + E I +
Sbjct: 583 YEP---ERVKDCLQKIRLSSHHLLGLINDVLDMSRIENGNFHINMVPVSLPAVLREVIMI 639

Query: 675 VQLYANEKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
                 EK  +      N    +  +D   ++QI LN+LSNA  FTP  G+I+       
Sbjct: 640 TLAGIREKAQIFDVHLVNLEDEQFYSDALRLRQILLNLLSNACKFTPVSGRIVFEVEQKD 699

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
              +I  V DTG GM+   LE   + F +  +S+  + EG+GLG+ + K +VD   G   
Sbjct: 700 RTALIFTVSDTGAGMSPEFLEHIFEAFTREQDSRTDQIEGSGLGMCITKRLVDMMEGTIT 759

Query: 794 IFSTPAKGTLIEIIFPLYDTSHPHD 818
           + S P KGT  ++  P        +
Sbjct: 760 VSSCPGKGTTFQVTLPAAVVQEEEE 784



 Score = 45.8 bits (107), Expect = 0.030,   Method: Composition-based stats.
 Identities = 30/288 (10%), Positives = 69/288 (23%), Gaps = 29/288 (10%)

Query: 313 AYFDEGENLTPETVDKCPIPFFVYSHGNL---FYANPSFLLLTKYK--SVDDIEIAGGLS 367
             +D+  +     +         +         +AN  +  L  Y     + +       
Sbjct: 5   LSYDQLNDEYSMLMSVLGASVSKHLIDEHYTCIWANDYYYELIHYTKPEYEALFQNHCDK 64

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
              + P+       K                    + +       +              
Sbjct: 65  YFYNNPEGWKLLTEKINSALEKKEKRYTI---FLPMIYPDGEKFWVKLQSVFTDECIDGY 121

Query: 428 MPQNGIEPEDVDTRINKRKME----------IEVMQLCSILEATSDGIAIINREGIILST 477
                   +  +  + +++ E           E   L   L   S    +I+     +  
Sbjct: 122 PVAYTTMTDVTEMVLARQEQEYTQQVVEKVTQEQEMLMGAL-NVSVSKHLIDEHFTCVWA 180

Query: 478 NRAVSKLFGYP--VEDILRKPFTVFLE---QNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
           N    KL GYP    + L                 ++ + +  +L     Q  E I    
Sbjct: 181 NEHYYKLIGYPKAEYEALFHNHADEYYRNNPEGWEMLANKVQSVLERGEDQ-YELIIPMK 239

Query: 533 TKEEKLLSLRI----IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKK 576
            K+     +++      + +         M D++E    K++     K
Sbjct: 240 YKDGTGYWVKVFSYFTDEYINGIRTSYTVMTDVTELVHMKDEQEMLMK 287


>gi|78355417|ref|YP_386866.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78217822|gb|ABB37171.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 1070

 Score =  307 bits (786), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 114/681 (16%), Positives = 239/681 (35%), Gaps = 42/681 (6%)

Query: 168 IYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ 227
           ++         R   +   NR    P      +     H         +         + 
Sbjct: 107 VFDAQGRIL-ARSVPLRTANRQWMTPPEDPLVMQGILLHTA--SDIVRTPAGLAARAVAP 163

Query: 228 QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287
              P  L+    V +           +K +    +T     L  +   H  + ++     
Sbjct: 164 VYRPSSLQAIGAVVTTFPLDRSMLQHIKEQTQADITLHYPDLRVESTLH--DASKLPVTH 221

Query: 288 YFGTLQNNSKESFEYLSHRNHPS-LSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANP 346
            +    +  + +     +    +  +             V +  +   +  +    Y + 
Sbjct: 222 DWDNTYDVMRNAEGPAQYEAQIAGSTYALSSIPLRNNAGVTQAVLSVALNRNMLRQYLHD 281

Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
           +   L     +  +  AG    +  A KL+         + R     ++           
Sbjct: 282 AVQTLVLTLVLALVMAAG--LGMWTAEKLTRPLHEMVQAIRRMAGGNLSVRVTEGGSDEL 339

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT--------RINKRKMEIEVMQLCSIL 458
            E + +   +      Q    +       E                R++     +   I 
Sbjct: 340 GELAQSFNKMAGRLEEQRAHLLDALHEHEETTLRLANANKGLEYANRELLSAREEYRKIF 399

Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
           E +  GI     EG  +  NRA++++ GY   + L    T    Q   +  +    + L 
Sbjct: 400 EGSVQGIYQTTLEGRFIKANRALARMLGYGSAEELIGTVTDIGSQLYVNPADRQRLKSLL 459

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHA 574
                  +  T    ++   + + I ++ +   +         + DI+E ++ +      
Sbjct: 460 STRSSLSDFETRFYRRDGSQVPVSISVRLVYDENDLPQYLEGALTDITERERRREAEQQR 519

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
           +       +  S+FLAR+SHE+RTPL A++G ++++      P        Y +   +SG
Sbjct: 520 EAAEAASKAK-SEFLARMSHEVRTPLNAVVGMADLLWESDLTP----DQRLYVDIFRKSG 574

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
             +L ++ND+LD S++E+G++ L   P SL + ++  +++    A  +++ +       +
Sbjct: 575 QTLLALLNDILDYSRLEAGRLTLERLPFSLRDTLTMTVNMHAAQAESRQLSLSLHVDETL 634

Query: 695 PR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---------VILRVRDT 744
           P     D   ++QI  N+LSN+I FT  G  + +       ++         V + VRDT
Sbjct: 635 PDNYCGDSLRLRQILGNLLSNSIKFTREGS-VEVHVGPAPGQQELTAGEPVMVRICVRDT 693

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G+     +   + F Q  +S   +  GTGLGL + + +     G+ ++ ST  +GT +
Sbjct: 694 GIGIPENVQQTIFESFTQADSSITRQFGGTGLGLSICRMLTTMMGGRIWLESTQGQGTAV 753

Query: 805 EI--IFPLYDTS----HPHDC 819
            +     L+D S     P +C
Sbjct: 754 YVEMRLDLHDRSAAETQPEEC 774



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/243 (10%), Positives = 77/243 (31%), Gaps = 16/243 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            +     G   + +  L + +G  + + +   + D+   L+++P +              
Sbjct: 406 IYQTTLEGRFIKANRALARMLGYGSAEELIGTVTDIGSQLYVNPADRQRLKSLLSTRSSL 465

Query: 146 ---KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
              +T  +  +G+   VP+ ++   +Y  N +   +   G +         R   ++ + 
Sbjct: 466 SDFETRFYRRDGSQ--VPVSISVRLVYDEN-DLPQYLE-GALTDITERERRREAEQQREA 521

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
             +      +  + +  E           P   +      L E     D  L  + +   
Sbjct: 522 AEAASKAKSEFLARMSHEVR--------TPLNAVVGMADLLWESDLTPDQRLYVDIFRKS 573

Query: 263 -TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
             +  + L +  D+  +   + T ++   +L++    +    + +      +     +  
Sbjct: 574 GQTLLALLNDILDYSRLEAGRLTLERLPFSLRDTLTMTVNMHAAQAESRQLSLSLHVDET 633

Query: 322 TPE 324
            P+
Sbjct: 634 LPD 636


>gi|298486653|ref|ZP_07004711.1| Probable two-component sensor [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298158868|gb|EFH99930.1| Probable two-component sensor [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 547

 Score =  307 bits (786), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 97/386 (25%), Positives = 179/386 (46%), Gaps = 11/386 (2%)

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490
             +  +       +R +  +   + +++E T   I + +REG++   N +  ++F    E
Sbjct: 10  AWMRRQIRQREAAERALGDQFEFMRALVEGTPHPIYVRDREGMLRMCNDSYLRVFSAQRE 69

Query: 491 DILRKPFTVFLEQNTPSV--MNHYLTEILSLDLRQTLEKITLGSTKEEKLL-SLRIIIKK 547
           DI+ K  T  +  N             +++ +    L++      ++  +   +      
Sbjct: 70  DIIGKSATEGVLGNAFEAREYAADYQRVMASNTALILDRPLRIGDRQMTIYHWILPFRDS 129

Query: 548 LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
           L           DISE +Q    L  AK+ A+  S  KS FLA +SHEIRTP+ A+IG  
Sbjct: 130 LGEVQGIIGGWIDISERRQLIEDLQAAKEQADAASRAKSTFLATMSHEIRTPMNAVIGML 189

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
           E+   +      +            S N +LD++ D+LDI++IESG+++L+ E  +L   
Sbjct: 190 ELALKRADHGELD---RSAIEVAYSSANDLLDLIGDILDIARIESGRLSLNPERANLRRL 246

Query: 668 VSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGG-QI 725
           V   + +    A +K + +     + I   +L D    KQI  N++SNAI FTP G  +I
Sbjct: 247 VESVLRVFDGLARQKDLDLVLELDSRINADVLIDPLRFKQILSNLVSNAIKFTPMGRIKI 306

Query: 726 IISTTHTSNE---EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
           ++    + +     + + V+D+G+G++  + ++  +PF Q  N+ Q+   G GLGL + +
Sbjct: 307 VLQAAESPDPQLLHLHITVQDSGIGISAEDQQRLFEPFAQADNTGQMARTGAGLGLVICR 366

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIF 808
           ++     G   + S P +GT I +  
Sbjct: 367 SLCMMMGGNLSLDSVPGQGTRISMNL 392



 Score = 40.8 bits (94), Expect = 0.97,   Method: Composition-based stats.
 Identities = 31/274 (11%), Positives = 63/274 (22%), Gaps = 21/274 (7%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCD--VSDILHIDPNNHIGDLLKRQNTWYGKT 147
           D  G L+  ++   +        +IG    +  + +             +   NT     
Sbjct: 48  DREGMLRMCNDSYLRVFSAQREDIIGKSATEGVLGNAFEAREYAADYQRVMASNTALILD 107

Query: 148 TLWPIEGTN--LYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
               I      +Y  I    LP      E  G  G  I              +   ++  
Sbjct: 108 RPLRIGDRQMTIYHWI----LPFRDSLGEVQGIIGGWI--DISERRQLIEDLQAAKEQAD 161

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
                K    +    +            L +  K +   E      +V  +    LL   
Sbjct: 162 AASRAKSTFLATMSHEIRTPMNAVI-GMLELALKRADHGELDRSAIEVAYSSANDLLDLI 220

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG------- 318
              L +     +  L+   ++     L  +    F+ L+ +    L    D         
Sbjct: 221 GDIL-DIARIESGRLSLNPERANLRRLVESVLRVFDGLARQKDLDLVLELDSRINADVLI 279

Query: 319 -ENLTPETVDKC-PIPFFVYSHGNLFYANPSFLL 350
                 + +             G +     +   
Sbjct: 280 DPLRFKQILSNLVSNAIKFTPMGRIKIVLQAAES 313


>gi|219127668|ref|XP_002184053.1| sensor kinase protein 3 [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217404284|gb|EEC44231.1| sensor kinase protein 3 [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 1017

 Score =  307 bits (786), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 116/752 (15%), Positives = 234/752 (31%), Gaps = 45/752 (5%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQNTWYGK 146
            +D HG +   ++   +  G       G  +            + +    L  +     +
Sbjct: 186 KMDKHGRVDLWNKVSTEITGVTERDARGENISVFLTESSRKAFSDVMDKALSGEACANYQ 245

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                 +G   Y+    +  P    +   +G     I                   +   
Sbjct: 246 LEFLTKDGCIRYLL--GSVTPRTDLDGSIAGC--LVIAQDVTETAIRERTVTATALELRI 301

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH---KDDVLKTEKYPLLT 263
           L +              I        +        +  + + H     D+    +  L  
Sbjct: 302 LIDTANVAIFGVDCDGYINEWNDTMANTCGFTGDEAFHKSFVHTFIAQDLRPAFEVVLEI 361

Query: 264 SEESSLPEQEDFHTI--NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
           + +    +  +   +                +N+  E    +      +     D     
Sbjct: 362 ALQGKFTKNYEAEILTKLGEIRYLLLNTTARRNSENEIIGVVLIAQDVTEEYKHDRAVAA 421

Query: 322 ----TPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
                 + +D    P F +   G++   N     +T Y   +  +    L      P + 
Sbjct: 422 MASELRQLIDTANAPIFGIDCEGDVNEWNDKTSEITGYTKEEAFD--CCLVETFIVPSMQ 479

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           ++         +   T           +        +      + +     +   G+  +
Sbjct: 480 ESVRHVLETALKGRGTS----NYDLEFRTKSNEIRHLLVNATTRRDAENNIVGVVGVAQD 535

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             +     R +    ++L  +++  +  I  I+  G +   NR   ++ GY  E+   +P
Sbjct: 536 VTEAVQRDRAVAGMALELRQLIDTANAPIFGIDINGNVNEWNRRTQEITGYSKEETFDEP 595

Query: 497 F-TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--C 553
               F+ ++    +   L   L        E   L  + E   + +    ++ P  +   
Sbjct: 596 LVERFIAKHIRKKVQEILDSALQGIETSNYELEFLSKSGEPAFMLVNATTRRDPEFNVVG 655

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD----FLARVSHEIRTPLTAIIGFSEV 609
                 D++E ++   +L   +   +     K +      A  +HE+R PL AI     V
Sbjct: 656 VVGVAQDVTEDRKHAEELRKMQ-YLQALQEAKVETERNMTAYFAHELRNPLGAIDSALSV 714

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           +                 + +    + +  I+N+LLD+ K+E GKM L+  P+SL     
Sbjct: 715 MPENI-----PDSAKSLVSGMQLCCSFMSSIMNNLLDVRKMEEGKMTLNKTPISLKALSR 769

Query: 670 EAISLVQLYANEKRILIRTSFANN-IPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
           +   ++        +    S   N    +L D   ++Q+  N+++NAI +T  GG I I 
Sbjct: 770 KVHKMLGPSVKP-GVTFTESCTTNGKDWVLGDEHRLQQVMTNVITNAIKYT-VGGSISIY 827

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                 ++V     DTG G+   E EK  + F       +    GTGLGL +AK +VD  
Sbjct: 828 MGWE-GDDVKFECVDTGPGIPKREQEKLFQRFV-----MRGGAPGTGLGLAIAKHLVDLA 881

Query: 789 MGKFYIFSTP--AKGTLIEIIFPLYDTSHPHD 818
            G     S P    GT   ++ PL     P +
Sbjct: 882 GGSIRFDSDPSIQAGTACIVLLPLALCDPPEE 913



 Score = 68.5 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 37/282 (13%), Positives = 93/282 (32%), Gaps = 17/282 (6%)

Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDI 360
            ++  +  +      E   +     D    P F V   GN+   N +   L+ + S+D +
Sbjct: 12  VMTSVDEQAQHGLALERIGIESSVFDSIASPIFAVDRLGNVTDWNETLADLSGFASLDVV 71

Query: 361 EIAGGL--------STLLDAPKLSDNNAIKPVMLYRSDRTC---IAASARLHTIQWNREN 409
                L                     + + ++   S+++       +AR+         
Sbjct: 72  RRPAELMLDGCVDTWREALQTVQRAKRSFRCMLRLHSNQSVSTSTWYAARISRYNSYEGI 131

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469
            +    +  E+   F      +  +    DT+  +   + +  +L   L  T+  I  ++
Sbjct: 132 LIGAVCMLDEETQTFDMGKHIHVQDLRPNDTKGYEPIPDCDSREL---LGGTNILIIKMD 188

Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
           + G +   N+  +++ G    D   +  +VFL +++    +  + + LS +     +   
Sbjct: 189 KHGRVDLWNKVSTEITGVTERDARGENISVFLTESSRKAFSDVMDKALSGEACANYQLEF 248

Query: 530 LGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKN 569
           L      + L   +  +     S     +   D++E    + 
Sbjct: 249 LTKDGCIRYLLGSVTPRTDLDGSIAGCLVIAQDVTETAIRER 290



 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/271 (8%), Positives = 61/271 (22%), Gaps = 13/271 (4%)

Query: 68  LDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCD-VSDILH 126
           + SE   + D         + ID  G + E +++  +  G    +     L +       
Sbjct: 422 MASELRQLIDTANAP---IFGIDCEGDVNEWNDKTSEITGYTKEEAFDCCLVETFIVPSM 478

Query: 127 IDPNNHIGD-LLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVH 185
            +   H+ +  LK + T               ++ +   A           G    G+  
Sbjct: 479 QESVRHVLETALKGRGTSNYDLEFRTKSNEIRHLLV--NATTRRDAENNIVGV--VGVAQ 534

Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE 245
                         +  +   L +             ++         +   +K  +  E
Sbjct: 535 DVTEAVQRDRAVAGMALELRQLIDTANAPIFGIDINGNVNEWNRRTQEITGYSKEETFDE 594

Query: 246 YYAHKD----DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301
               +        K ++      +       E        +        T + + + +  
Sbjct: 595 PLVERFIAKHIRKKVQEILDSALQGIETSNYELEFLSKSGEPAFMLVNATTRRDPEFNVV 654

Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIP 332
            +               E    + +      
Sbjct: 655 GVVGVAQDVTEDRKHAEELRKMQYLQALQEA 685



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/160 (10%), Positives = 42/160 (26%), Gaps = 5/160 (3%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCD--VSDILHIDPNNHIGDLLKRQNTW 143
            + ID +G + E +    +  G    +     L +  ++  +       +   L+   T 
Sbjct: 564 IFGIDINGNVNEWNRRTQEITGYSKEETFDEPLVERFIAKHIRKKVQEILDSALQGIETS 623

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFG-IVHVNRVDNDPRALGKRLDK 202
             +       G   ++ +   A           G  G    V  +R   +     + L  
Sbjct: 624 NYELEFLSKSGEPAFMLV--NATTRRDPEFNVVGVVGVAQDVTEDRKHAEELRKMQYLQA 681

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS 242
                 E ++  ++    +              M   +  
Sbjct: 682 LQEAKVETERNMTAYFAHELRNPLGAIDSALSVMPENIPD 721


>gi|108803625|ref|YP_643562.1| PAS/PAC sensor signal transduction histidine kinase [Rubrobacter
           xylanophilus DSM 9941]
 gi|108764868|gb|ABG03750.1| PAS/PAC sensor signal transduction histidine kinase [Rubrobacter
           xylanophilus DSM 9941]
          Length = 584

 Score =  307 bits (786), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 103/608 (16%), Positives = 211/608 (34%), Gaps = 48/608 (7%)

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
              L E +           +  + +      R +++     E YA +     ++   L  
Sbjct: 11  QQRLVEAENTLLIQRSRTANAGATEFIEGLRRPEDQTLPPPESYAGELVQTVSDPTGLAV 70

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
                            N     + +  L           S      +    D       
Sbjct: 71  LYVGPGGRPLAARDGLGNPLDPHRTYERLGLERGLIQRVASSPQGKGILTRADGSYITVW 130

Query: 324 ETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
             +D   +     S G + Y  P    L +  S   + I G + T +     +     + 
Sbjct: 131 PLLDAGGV-----SRGVMVYDVPQD-ELDQSLSYLRLGIVGAIGTSVLLAGGASLLLTRQ 184

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
           +    S+    A                    +P    ++  E          +++  I 
Sbjct: 185 ITRPLSETRDAAIRVASGDYSTP---------VPVTSRDELGEMARAFNYMAGEIEHYI- 234

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
             +++ +   L ++LEA+ + +   +  G I   N A +++ G    D   +        
Sbjct: 235 -SEIQDQKKHLEAVLEASLEALVATDHAGGITMANAAAARMLGVRPGD-RGRSLREV--- 289

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
               V    L  +          +      K     + R+            L + DISE
Sbjct: 290 ---GVAPEILGIVREAAETGFSVREVELGEKSFWAYAARMDSG-GRSQGGVILAVRDISE 345

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN--QRFGPLGNP 621
           ++  +                KS F++  SHE+RTPLT I     +++   +R  PL N 
Sbjct: 346 YRALE--------------RAKSAFVSDFSHELRTPLTTIQSAVGLLQRARERLDPLEN- 390

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
                    +   + +  +V +L+ +++++S + +L   P  LD  + +A+  V+  A  
Sbjct: 391 ---RALELAEGELSRIRAMVEELMTLAQMDSWQYSLQLAPAGLDRILRDAVEAVEPKALR 447

Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
             I I  +       +  D + + Q+ LN+L NA+ ++  G ++ ++    S E+ ++RV
Sbjct: 448 FGIEI--NLYEAGVHLTCDAQKLYQVFLNLLDNAVKYSEEGSRVDVTVA-ESGEQAVVRV 504

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
           +DTGVG+   +L    + F ++   +     G+GLGL + K +V+ + G   + S   +G
Sbjct: 505 KDTGVGIPEKDLPHLFERFYRVEKDRSRSTGGSGLGLAICKQIVEMHGGSISVESRLGEG 564

Query: 802 TLIEIIFP 809
           +   +  P
Sbjct: 565 STFTVRLP 572


>gi|326202326|ref|ZP_08192195.1| multi-sensor signal transduction histidine kinase [Clostridium
           papyrosolvens DSM 2782]
 gi|325987444|gb|EGD48271.1| multi-sensor signal transduction histidine kinase [Clostridium
           papyrosolvens DSM 2782]
          Length = 615

 Score =  307 bits (786), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 75/365 (20%), Positives = 168/365 (46%), Gaps = 21/365 (5%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            +  E  +  +I++  SD +  ++ E  I+  N A  K+F    E +  K F   LE   
Sbjct: 262 NLLAEKNKSVAIVKCISDPLVFLDTEYRIILLNDAFEKIFNVSEEVLTNKHF---LEGIR 318

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISE 563
              +  ++++          +   + +  E+   ++ +   K   ++         +++ 
Sbjct: 319 NGEIFDFISDTFRSGSETEQKIFAVKANCEDYYFNIIVTTVKDNNANLSGIIAVFQNVTH 378

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            K+ +                ++DF+A +SHE +TPLT+I+  ++++ ++  G L N   
Sbjct: 379 LKELE--------------KIRTDFIATISHEFKTPLTSIVMGTDILSDEGVGNL-NDDQ 423

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            +    I    + +  +VNDLL++++IESGK     +  ++D+ +  A+      A ++ 
Sbjct: 424 RQIIKAIREDSDRLTKLVNDLLELTRIESGKAIFKIKEYAIDDIIECAVKPFYQIAEQQD 483

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
             +      ++PR++AD   +  +  N++SNA+ +T +G +I +  +      + + V+D
Sbjct: 484 KTLYFKCDEDMPRVIADFEKITWVLNNLISNALKYTNAGDEISVIASVDKENTMYVTVKD 543

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TG+G+    ++   + F Q+ ++      GTGLGL + K +++A+ G+ +  S    G+ 
Sbjct: 544 TGLGIPEEYIDNIFEKFVQVKDAD-FEVRGTGLGLAVVKEIIEAHHGRIWCESRLDVGSS 602

Query: 804 IEIIF 808
                
Sbjct: 603 FSFTL 607


>gi|238796208|ref|ZP_04639718.1| Aerobic respiration control sensor protein arcB [Yersinia
           mollaretii ATCC 43969]
 gi|238719901|gb|EEQ11707.1| Aerobic respiration control sensor protein arcB [Yersinia
           mollaretii ATCC 43969]
          Length = 777

 Score =  307 bits (786), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 76/374 (20%), Positives = 160/374 (42%), Gaps = 16/374 (4%)

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
                + ++  +   L S L+A+ D +   N +      NRA+  L G   + ++     
Sbjct: 142 HREQAQIELGQQSALLRSFLDASPDLVYYRNEDNEFSGCNRAMELLTGKSEKQLVGLTPK 201

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII--KKLPFSSCYSL 556
                +    +     ++   ++  T E+  +     +    LR +    ++        
Sbjct: 202 DVYAPDIAEKVMETDEKVFRHNVSLTYEQWLVYPDGRKACFELRKVPFYDRVGKRHGLMG 261

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
              DI+E K+ ++ L +        S  K+ F++ +SHE+RTPL  I+G S ++ +    
Sbjct: 262 FGRDITERKRYQDALEN-------ASRDKTTFISTISHELRTPLNGIVGLSRILLDTEL- 313

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
              +   ++Y   I  S   + +I ND++++ K+E  K+ L  +P+     +++  +L  
Sbjct: 314 ---DSEQLKYLKTIHVSAITLGNIFNDIIEMDKLERRKVQLDNQPIDFTGFMADLENLTG 370

Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
           L    K +         +P  ++ D   ++QI  N++ NA+ FT  G +I++      N+
Sbjct: 371 LLVQPKGLKFTMEPELPLPEKVITDGTRLRQILWNLIGNAVKFTQQG-EIVVRVRREEND 429

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ-QIRGEGTGLGLPLAKAMVDANMGKFYI 794
            +   V D+G+G+   E +K    + Q+ +S       GTG+GL ++K +  +  G   +
Sbjct: 430 RLTFEVEDSGMGIPEDEQDKIFAMYYQVKDSNGGRPATGTGIGLAVSKRLAQSMGGDITV 489

Query: 795 FSTPAKGTLIEIIF 808
            S    G+   +  
Sbjct: 490 KSAQGSGSCFTLTI 503



 Score = 41.9 bits (97), Expect = 0.47,   Method: Composition-based stats.
 Identities = 16/124 (12%), Positives = 35/124 (28%), Gaps = 5/124 (4%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN-TWYGKTTLWPIE 153
               +  +    G    +++G+   DV      +      + + R N +   +  L   +
Sbjct: 177 FSGCNRAMELLTGKSEKQLVGLTPKDVYAPDIAEKVMETDEKVFRHNVSLTYEQWLVYPD 236

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
           G       +L  +P Y R  +  G  GFG           +   +   +  +        
Sbjct: 237 GRKACF--ELRKVPFYDRVGKRHGLMGFG--RDITERKRYQDALENASRDKTTFISTISH 292

Query: 214 HSSV 217
               
Sbjct: 293 ELRT 296



 Score = 40.8 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 22/224 (9%), Positives = 56/224 (25%), Gaps = 10/224 (4%)

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
           V  L E       ++   +       E +    E+   +N     +++          + 
Sbjct: 77  VEQLEESRQRLSRLVDKLEVMRYRDLELNQQLTENIAQLNQEIVEREKAEKAHLQVVDKL 136

Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVD 358
            E + HR    +     +   L    +D  P   +  +        N +  LLT      
Sbjct: 137 KEEMGHREQAQIE--LGQQSALLRSFLDASPDLVYYRNEDNEFSGCNRAMELLTGKSEKQ 194

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
            +        L      + + A K +           +      + +             
Sbjct: 195 LVG-------LTPKDVYAPDIAEKVMETDEKVFRHNVSLTYEQWLVYPDGRKACFELRKV 247

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
              ++  +     G   +  + +  +  +E       + +   S
Sbjct: 248 PFYDRVGKRHGLMGFGRDITERKRYQDALENASRDKTTFISTIS 291


>gi|284035959|ref|YP_003385889.1| multi-sensor signal transduction histidine kinase [Spirosoma linguale
            DSM 74]
 gi|283815252|gb|ADB37090.1| multi-sensor signal transduction histidine kinase [Spirosoma linguale
            DSM 74]
          Length = 1259

 Score =  307 bits (786), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 107/780 (13%), Positives = 262/780 (33%), Gaps = 57/780 (7%)

Query: 59   QESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRL 118
             E       L +    +F+      +   + D  G ++  ++   K  G    ++IG   
Sbjct: 486  DERTHEVRQLSTVQGAIFE---HASQAILSTDTDGVIQTANQACEKLTGYQVDELIGRVA 542

Query: 119  C-DVSDILHIDP-------------NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLA 164
              +  +   + P             ++ + ++L +Q  +  +  +   +G+   VP+ +A
Sbjct: 543  HFEFGEADGLTPIVNYRATPPGEVVSDPLLNMLAKQGYFQTECRICRKDGSL--VPVLMA 600

Query: 165  ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDI 224
            +  +   N    G+   GI           +  +  +++ + + +       +      +
Sbjct: 601  SSVLADENNITIGY--VGIATDISGLKAIESKLQEKNQELNTIFDGAIDLHCMVSADGKL 658

Query: 225  FSQQSPP----PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINL 280
             +          + + +    +  E     +  L  +    LT+ +    +   F   + 
Sbjct: 659  LTVNRAWDITLGYTKEELDQLTFAELVHPDEQELLQQSIWELTNHKPVRSQLNRFLRKDG 718

Query: 281  NQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG- 339
               + +     +  NS                                     +      
Sbjct: 719  TYRSLEWN--AIWVNSIFYVSARDVTERQQAETQLINLNQRLQVATKAAGQGIWERDFEK 776

Query: 340  NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399
            N    +     +   +            +        D+   + + L          S  
Sbjct: 777  NTLIWDDRLWEMHGLRP----GRTDWSYSDFTKIIHPDD---REIFLEA--PPTNLISNV 827

Query: 400  LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459
            +  I    ++   M        +   + +   G+  +  + ++ +  +     +   I E
Sbjct: 828  VARIVLPDDSVRYMETNGIVMTDDAGKPVRAIGVVADVTERKVAEDALRESERRFREIAE 887

Query: 460  ATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILRKPFTVF--LEQNTPSVMNHYLTEI 516
               +   I + E   +L  N A  +++    + +   P++    + +    ++  ++ + 
Sbjct: 888  NVDEIFWIHSAEPFELLYVNPAYERVWNASCQSLYDDPWSFMKAILEEDKPLILDFMNQY 947

Query: 517  LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLS 572
             +    Q   +    +  +  L  L I    +  S      +    +D++  K +++ L 
Sbjct: 948  KAGYEGQFYCR---LNGVDGNLRWLSIRTFVVHDSYGKIVRHIGIANDVTSQKDKESVLQ 1004

Query: 573  HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK--NQRFGPLGNPRYIEYANYI 630
             +    ++ +  KS F++  SHE RTPLT I    ++IK   +      +     + + I
Sbjct: 1005 QSLHREQELNQLKSQFVSTASHEFRTPLTTIQSSVDLIKFYLKLPTATASKSIHHHLDVI 1064

Query: 631  DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL-VQLYANEKRILIRTS 689
             +  +    +++++L I  I++GK+  + +   +    +E I       A+ +   +  S
Sbjct: 1065 GKEIDQFGTLLSNILTIGTIDAGKVKFNPQQADIVAVCTEIIRTHFSEQADHR--TVDVS 1122

Query: 690  FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749
                      D + +  + +N+LSNA  F+     + +       + VI++V D GVG+ 
Sbjct: 1123 IEGTPYMAFIDQKLISHVIVNLLSNAFKFSSDNPALRL---LFKEKAVIIQVVDRGVGIP 1179

Query: 750  NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
              E+    + F +  NS      GTGLGL +A+  V+ + G   I S   KGT+  +  P
Sbjct: 1180 AREMSALFQAFFRASNSNG--IPGTGLGLVIARQFVELHGGYLDIRSEEKKGTVCTVTLP 1237



 Score =  111 bits (278), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 43/368 (11%), Positives = 109/368 (29%), Gaps = 17/368 (4%)

Query: 231 PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYF- 289
           PP L           +        +     L  +        E+   I     ++     
Sbjct: 406 PPELSASLIEEGFQSFVIIPLFSRQECIGALTLASARPYFFTEEHQQITQEVASQLAIVL 465

Query: 290 --GTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY-ANP 346
               L +  +E  E L  R          +   +     +             +   AN 
Sbjct: 466 YQQRLDDQLEEYTEQLEQRVDERTH-EVRQLSTVQGAIFEHASQAILSTDTDGVIQTANQ 524

Query: 347 SFLLLTKYKSVDDIEIAGGLS-------TLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399
           +   LT Y+  + I              T +   + +    +    L             
Sbjct: 525 ACEKLTGYQVDELIGRVAHFEFGEADGLTPIVNYRATPPGEVVSDPLLNMLAKQGYFQTE 584

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459
               + +      +       A++    +   GI  +    +  + K++ +  +L +I +
Sbjct: 585 CRICRKDGSLVPVLMASSV-LADENNITIGYVGIATDISGLKAIESKLQEKNQELNTIFD 643

Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL 519
              D   +++ +G +L+ NRA     GY  E++ +  F   +  +   ++   + E+ + 
Sbjct: 644 GAIDLHCMVSADGKLLTVNRAWDITLGYTKEELDQLTFAELVHPDEQELLQQSIWELTNH 703

Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579
                  ++     K+    SL      +     + ++  D++E +Q + +L +  +  +
Sbjct: 704 KP--VRSQLNRFLRKDGTYRSLEWNAIWVNSI--FYVSARDVTERQQAETQLINLNQRLQ 759

Query: 580 KESSHKSD 587
             +     
Sbjct: 760 VATKAAGQ 767



 Score = 48.1 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/114 (13%), Positives = 36/114 (31%), Gaps = 5/114 (4%)

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
             N A + +      D+  +P T   +        + L   L     Q   K   G    
Sbjct: 36  LVNNAFANILRRTRADLTGQPVTGLFQDEEDKSFVNRLLTSLQTGEPQQFHK--HGRCA- 92

Query: 536 EKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
            + +     + ++       + + D+SE K+ + +L     +    ++     +
Sbjct: 93  GEDVWFYTTVTRM--DQQLMVNIQDVSEQKKSECELQQRLAVESILTAVSGRMI 144


>gi|254419545|ref|ZP_05033269.1| PAS fold family [Brevundimonas sp. BAL3]
 gi|196185722|gb|EDX80698.1| PAS fold family [Brevundimonas sp. BAL3]
          Length = 523

 Score =  307 bits (786), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 90/367 (24%), Positives = 168/367 (45%), Gaps = 13/367 (3%)

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
           L +  + + D + +   +G ++  + +   + GY  ++++ +     +  +        +
Sbjct: 18  LDTFFDVSLDLLVVRELDGPVVKASASWFSVLGYRPDELVGQLLPSLVHPDDQPATQTAI 77

Query: 514 TEILSLD-LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572
            E+ +       L +      ++   ++L    ++            D++     +  L 
Sbjct: 78  LEVTNRRPGDPVLGQTNRYRHRDGHYVTLEWRAQRFGD--RIYAVARDVTAKVAAEKALI 135

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
            AK  AE  S  KSDFLA +SHE+RTPL  +IG  + +      P       E  N I  
Sbjct: 136 EAKAAAEAASRAKSDFLANMSHEVRTPLNGVIGIVDALSRTALDPA----QTEMVNLIRA 191

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
           SG  +  +V+D+LD+SKIE+G++ L   P  LDEA+   + ++++ A+EK +       +
Sbjct: 192 SGVTLERLVSDILDVSKIEAGELTLETRPFDLDEALDAPLDVMRVRADEKGLRFDVIRDD 251

Query: 693 NIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDTGVG 747
               + + D   ++Q+  N+LSNA+ FT  GG + +      +      +I+ ++DTGVG
Sbjct: 252 EARGVFVGDSTRIRQVIGNLLSNAVKFTHQGG-VSVRIALDEDHDSLTHLIVDIQDTGVG 310

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
                  +    F Q   +   R  GTGLGL + +A+V+   G+    STP +G+   I 
Sbjct: 311 FNAEHAPRLFDRFSQADATITRRFGGTGLGLSICRALVEMMGGRITAESTPGQGSRFRIE 370

Query: 808 FPLYDTS 814
            PL  ++
Sbjct: 371 IPLARST 377



 Score = 43.1 bits (100), Expect = 0.22,   Method: Composition-based stats.
 Identities = 27/258 (10%), Positives = 57/258 (22%), Gaps = 30/258 (11%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH-IDPNNHIGDL--LKRQNTWYGKT- 147
            G + + S      +G    +++G  L  +            I ++   +  +   G+T 
Sbjct: 35  DGPVVKASASWFSVLGYRPDELVGQLLPSLVHPDDQPATQTAILEVTNRRPGDPVLGQTN 94

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                +G   YV ++  A             R + +                        
Sbjct: 95  RYRHRDGH--YVTLEWRAQRFGD--------RIYAVARDVTAKVAAEKALIEAKAAAEAA 144

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL-TSEE 266
              K    +    +          P   +   V +L+                    + E
Sbjct: 145 SRAKSDFLANMSHEVR-------TPLNGVIGIVDALSRTALDPAQTEMVNLIRASGVTLE 197

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
             + +  D   I   + T +     L        + +            DE         
Sbjct: 198 RLVSDILDVSKIEAGELTLETRPFDLDEALDAPLDVM--------RVRADEKGLRFDVIR 249

Query: 327 DKCPIPFFVYSHGNLFYA 344
           D      FV     +   
Sbjct: 250 DDEARGVFVGDSTRIRQV 267


>gi|261419733|ref|YP_003253415.1| histidine kinase [Geobacillus sp. Y412MC61]
 gi|261376190|gb|ACX78933.1| histidine kinase [Geobacillus sp. Y412MC61]
          Length = 470

 Score =  307 bits (786), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 92/465 (19%), Positives = 179/465 (38%), Gaps = 36/465 (7%)

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRS--DRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
            GL   L   K +     +  M  R   D    +    +  +  + +    +       A
Sbjct: 26  NGLEHRLLETKRAFAVRCELPMFERGYHDGPLYSHDLFVPVLSPSDDIEAIIVLSRLGAA 85

Query: 422 --NQFPENMPQNGIEPEDVDTRINK-RKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
             ++      Q G        ++    + E +      I     +GI +++ +G     N
Sbjct: 86  FTDEEAAEAEQLGRHISISLQKLALYEEAEKDRRLAEEIFNHLHEGIQLVDLQGTNKLMN 145

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQ-----NTPSVMNHYLTEILSLDLRQTLEKITLGST 533
             + + FG         P+  + +Q          +  +L + +     +          
Sbjct: 146 GRMKEWFGAAANGWHEMPYAEWKQQLCALVVDGRPLGAFLDQAVFGPADELSVMTYELKE 205

Query: 534 KEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
           K   +      + +            DI+  KQ +                KS+ ++ VS
Sbjct: 206 KRAVMEVYAAPLYRGGAKFGTIFVHRDIT--KQAEV------------DRMKSELVSTVS 251

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HE+RTPL  I+G +E++ N+   PL   R  +Y   I +    ++ ++ND LD+ ++E+G
Sbjct: 252 HELRTPLAGILGLAELLLNK---PLAPERQRKYLTAIGQEAERLMALINDFLDVQRMEAG 308

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKR---ILIRTSFANNIPRILADLRSVKQIALN 710
           +    +EPV L   + + I      A +          S       I  D   ++Q+  N
Sbjct: 309 RQTYRWEPVDLVPIMEKIID-----AEKMGTDIHTFSVSVETKRTMIRGDRERLRQLFTN 363

Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           ++ NA+ ++P+GG ++I   +  +  + + V+D G+G+    L    + F ++ NS + R
Sbjct: 364 LVHNAVKYSPNGGAVVIRL-YEHSGCLCVDVQDEGLGIPAEALPHIFEKFFRVDNSDRRR 422

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
             GTGLGL + K +  A+ G+  + S   KG+   + FPL     
Sbjct: 423 IGGTGLGLTIVKEIAKAHGGEVTVVSEEKKGSTFTVRFPLAPLPQ 467


>gi|15963791|ref|NP_384144.1| putative sensor histidine kinase protein [Sinorhizobium meliloti
           1021]
 gi|15072966|emb|CAC41425.1| Putative sensor histidine kinase [Sinorhizobium meliloti 1021]
          Length = 826

 Score =  307 bits (786), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 122/720 (16%), Positives = 249/720 (34%), Gaps = 41/720 (5%)

Query: 109 YAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALP- 167
              + +G    +             G  +K Q+    +  +  +        + L     
Sbjct: 118 ERPEFLGQLPAETGAPQDDRDFLAFGRWIKPQSAGQLEKAIEALRAQAQSFDLVLETQRN 177

Query: 168 -IYSRNREFSGFRGFG---IVHVNRVDNDPRALGK----RLDKKFSHLHEIKKGHSSVEK 219
            +       SG R F     ++  R +     L +         F  L +     +    
Sbjct: 178 EVLEAQGRVSGGRAFVRFIALNNLRAELAELKLERDQLHASLSTFRTLLDAVDLPAWQRG 237

Query: 220 EKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTIN 279
               +    +   +       S+              E+   +++ ++  P ++   T+ 
Sbjct: 238 GDGRLQWVNAAYANAVETQSASTAVAEERELLATTARERIRAVSTLQT--PFRDKVSTVV 295

Query: 280 LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH- 338
               T        +  +  +   +      ++            ET++    P  ++   
Sbjct: 296 RGNRTFFDVVDA-RTPAGSAGIAIDVSGIEAVREELARTLKSHAETLEHLATPVAIFDGN 354

Query: 339 GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398
             L + N +F  L     +  +E       +LD  +       +               A
Sbjct: 355 QRLQFYNQAFQRLWDL-DMGFLERKPDNGEVLDRLRAGGKLPEQLNWKQWKTSALSVYQA 413

Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI- 457
                    +    +  +P  +  +        G      +    +  +E     L  + 
Sbjct: 414 I--------DTQSDLWHLPNGQTLRVFATARPQGGATWVFENLTERVDLETRYNTLVQVQ 465

Query: 458 ---LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTV----FLEQNTPSVM 509
              ++  ++G+A+   +G I  +N A   ++G    +              L        
Sbjct: 466 GETIDHLAEGVAVFGPDGRIRLSNPAFRAIWGISETEAQPGTHIRAIEQACLASYDQPDG 525

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN 569
                 I++    +      +   +   +L   +I      +    LT  +I++  + + 
Sbjct: 526 WKRFAHIITSFDDERPSSRGILELRTGLILDYAVIPLPNAQT---MLTFVNITDSVRVER 582

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
            L+   +   K  + K+DF+  VS+E+R+PLT IIGF++++K   FG L N R  EY ++
Sbjct: 583 ALTEKNEALRKADALKNDFVHHVSYELRSPLTNIIGFADLLKTPVFGEL-NERQAEYVDH 641

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I  S +L+L IVND+LD++ +++G + L    V+L + + +    +     E  + +RT 
Sbjct: 642 IATSSSLLLTIVNDILDLATVDAGIVELELSEVNLIDLIDDVTQQMGDRLVESGVSLRTD 701

Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749
             +N+ RI AD + +KQI + +L+NA +F P G  I +        +    V DTG G+ 
Sbjct: 702 APDNLGRITADQQRLKQIFIKLLTNAANFAPDGSTIELKC-WREGSDFAFSVTDTGPGIP 760

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
              L      F         +  G GLGL + ++ V  + G   I S   +GT +    P
Sbjct: 761 QDVLNTVFNRFE-----SYGQRGGAGLGLSIVESFVSLHHGNVSIRSKEGEGTAVTCRIP 815



 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 38/382 (9%), Positives = 89/382 (23%), Gaps = 36/382 (9%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK 146
           W     G L+ ++      +   +         ++               +    T +  
Sbjct: 234 WQRGGDGRLQWVNAAYANAVETQSASTAVAEERELLAT----TARERIRAVSTLQTPFRD 289

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                + G   +  +           R  +G  G  I          R    R  K  + 
Sbjct: 290 KVSTVVRGNRTFFDVV--------DARTPAGSAGIAI--DVSGIEAVREELARTLKSHAE 339

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
             E      ++      +          R+ +      E      +VL   +      E+
Sbjct: 340 TLEHLATPVAIFDGNQRLQFYNQAFQ--RLWDLDMGFLERKPDNGEVLDRLRAGGKLPEQ 397

Query: 267 SSL-----PEQEDFHTINLNQYTKKQ-------YFGTLQNNSKESFEYLSHRNHPSLSAY 314
            +           +  I+                F T +     ++ + +      L   
Sbjct: 398 LNWKQWKTSALSVYQAIDTQSDLWHLPNGQTLRVFATARPQGGATWVFENLTERVDLETR 457

Query: 315 FDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
           ++    +  ET+D       V+   G +  +NP+F  +      +     G     ++  
Sbjct: 458 YNTLVQVQGETIDHLAEGVAVFGPDGRIRLSNPAFRAIWGISETEA--QPGTHIRAIEQA 515

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
            L+  +       +    T                  L + +      N           
Sbjct: 516 CLASYDQPDGWKRFAHIITSFDDERPSSRGILELRTGLILDYAVIPLPNAQ-----TMLT 570

Query: 434 EPEDVDTRINKRKMEIEVMQLC 455
                D+   +R +  +   L 
Sbjct: 571 FVNITDSVRVERALTEKNEALR 592


>gi|300088021|ref|YP_003758543.1| PAS/PAC sensor signal transduction histidine kinase
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527754|gb|ADJ26222.1| PAS/PAC sensor signal transduction histidine kinase
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 638

 Score =  307 bits (786), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 104/588 (17%), Positives = 211/588 (35%), Gaps = 74/588 (12%)

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
           E      E  H     +    +  G     +         R   S     +         
Sbjct: 67  EKGQAVYEMTHLSRDGRRIPAEVAGRFVEINGVRMAVSVIR-DISERKQMELRSMRLNSF 125

Query: 326 VDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
               P P       G + +AN S   L K+ +VD       +  +L  P    N   +  
Sbjct: 126 PLANPNPVLRATPEGEVVFANSSSTPLLKFWNVD-------IDGILPPPW--PNILNEVF 176

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
           +    D   +  + ++ ++                      ++   N    +  + +  +
Sbjct: 177 VAGHPDTIELDCNGQVFSMTM----------------APASQDRFINIYPLDITERKKME 220

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            ++      L  + ++  + +  ++ + +I   NR V K++GY  ++ L +         
Sbjct: 221 LEIRDNRDFLEQLNDSLPETVFNLDSDFVISYVNRQVDKMYGYQPQECLGRSMAFLFRNQ 280

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---YSLTMHDI 561
                     +I S + +           ++       II+   P         + + D 
Sbjct: 281 KEYEHFKDSLKIESGNRQVVSFSDFWHRRRDGSEFPCEIIMTVAPRPDGSAAAVIIVRDT 340

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSD---------------------------------- 587
           SE ++ + ++ + +   E     ++                                   
Sbjct: 341 SERQRAQMEIENYQHHLEDMVLERTRELETEISSRLKAEQELRRLFEREKALSAELKKQI 400

Query: 588 -----FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
                F   + HE++TPLT +I  SE ++      L +    E+A  I    + +   VN
Sbjct: 401 EERQLFTRGLVHELKTPLTPLITASEYLEQH----LTDKTAREFARNIRTGAHNMEKRVN 456

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702
           ++LD++K E G +N+      L E VS     ++  A+ + + + T+   +   I AD  
Sbjct: 457 EMLDLAKGEIGTLNVQNSRFDLVELVSLTAEFMKPEADRRGLELVTTLPPDPVEIEADPD 516

Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
            ++Q+  N+L N+I FT  GG+I I+T  + +  V +RV D G G+   +L    + + +
Sbjct: 517 RLRQVMSNLLGNSIKFTKRGGRIEIATGSSEH-SVFIRVTDNGAGIAEADLPYLFQAYHR 575

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
              S++ R  G GLGL L++ +V+ + G+  + S   +GT   I  P+
Sbjct: 576 GQTSEKSRMSGLGLGLTLSRMIVELHGGRIDLDSKKGQGTTFTITLPM 623



 Score = 89.3 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 46/386 (11%), Positives = 98/386 (25%), Gaps = 42/386 (10%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEG 154
           +  ++       G  A +M+GM   D++         +I  LL  +     + T    +G
Sbjct: 23  ITAVNRTACDRFGYSAEEMVGMPDKDLNAPDSYINIGNITGLLLEKGQAVYEMTHLSRDG 82

Query: 155 TNLYVPIDLAALPIYSRNREFSGFR-GFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
               +P ++A   +     E +G R    ++              R  +  S        
Sbjct: 83  R--RIPAEVAGRFV-----EINGVRMAVSVIRDISERKQME---LRSMRLNSFPLANPNP 132

Query: 214 HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE 273
                 E   +F+  S  P L+  N            + +            E  +    
Sbjct: 133 VLRATPEGEVVFANSSSTPLLKFWNVDIDGILPPPWPNIL-----------NEVFVAGHP 181

Query: 274 DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF 333
           D   ++ N             +   +   L       +     +  +   +  D  P   
Sbjct: 182 DTIELDCNGQVFSMTMAPASQDRFINIYPLDITERKKMELEIRDNRDFLEQLNDSLPETV 241

Query: 334 FVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGL------------STLLDAPKLSDNNA 380
           F       + Y N     +  Y+  + +  +                +L          +
Sbjct: 242 FNLDSDFVISYVNRQVDKMYGYQPQECLGRSMAFLFRNQKEYEHFKDSLKIESGNRQVVS 301

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP--ENMPQNGIEPEDV 438
                  R D +       +        ++ A+  +      Q    E         + V
Sbjct: 302 FSDFWHRRRDGSEFPCEIIMTVAPRPDGSAAAVIIVRDTSERQRAQMEIENYQHHLEDMV 361

Query: 439 DTRINKRKMEIE-----VMQLCSILE 459
             R  + + EI        +L  + E
Sbjct: 362 LERTRELETEISSRLKAEQELRRLFE 387



 Score = 65.8 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/119 (15%), Positives = 43/119 (36%), Gaps = 10/119 (8%)

Query: 457 ILEATSDGIAIINREG-----IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
           +L+   D + +   +G     II + NR     FGY  E+++  P       ++   + +
Sbjct: 1   MLDNVPDAVILWRYQGPGLSFIITAVNRTACDRFGYSAEEMVGMPDKDLNAPDSYINIGN 60

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRI--IIKKLPFSSCYSLTMHDISEWKQEK 568
               +L               +++ + +   +     ++         + DISE KQ +
Sbjct: 61  ITGLLLEKGQAV---YEMTHLSRDGRRIPAEVAGRFVEINGVRMAVSVIRDISERKQME 116



 Score = 38.1 bits (87), Expect = 5.6,   Method: Composition-based stats.
 Identities = 26/287 (9%), Positives = 66/287 (22%), Gaps = 34/287 (11%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN---- 141
            +N+D+   +  ++ ++ K  G    + +G  +  +        +      ++  N    
Sbjct: 241 VFNLDSDFVISYVNRQVDKMYGYQPQECLGRSMAFLFRNQKEYEHFKDSLKIESGNRQVV 300

Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR------- 194
           ++         +G+     I +   P    +          IV         +       
Sbjct: 301 SFSDF-WHRRRDGSEFPCEIIMTVAPRPDGS-----AAAVIIVRDTSERQRAQMEIENYQ 354

Query: 195 --------ALGKRLDKKFSHLHEI---KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL 243
                      + L+ + S   +     +     EK       +Q     L  +  V  L
Sbjct: 355 HHLEDMVLERTRELETEISSRLKAEQELRRLFEREKALSAELKKQIEERQLFTRGLVHEL 414

Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT-----LQNNSKE 298
                      +  +  L                 N+ +   +            N    
Sbjct: 415 KTPLTPLITASEYLEQHLTDKTAREFARNIRTGAHNMEKRVNEMLDLAKGEIGTLNVQNS 474

Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY-SHGNLFYA 344
            F+ +   +  +     +             P P  +      L   
Sbjct: 475 RFDLVELVSLTAEFMKPEADRRGLELVTTLPPDPVEIEADPDRLRQV 521


>gi|149181381|ref|ZP_01859878.1| two-component sensor histidine kinase [Bacillus sp. SG-1]
 gi|148850944|gb|EDL65097.1| two-component sensor histidine kinase [Bacillus sp. SG-1]
          Length = 721

 Score =  307 bits (786), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 109/728 (14%), Positives = 250/728 (34%), Gaps = 52/728 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D    + E +    + +      ++          +     +     +++      +T 
Sbjct: 35  VDKDLSIIEANSSALELLEIDENSLLRESFVQFFQAVPSPILSQYESAVRQGGEIEDETL 94

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           +    GT  ++ + +  L              F  +     D + +          +++ 
Sbjct: 95  MTTAAGTIKHIDLKITKLNNSEYA--------FLFLRDITSDREKQRNEHMNLHMLNNIF 146

Query: 209 EIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLKTEKY-PLLTS 264
           +       +   + +I           +L+ ++ ++     +  ++  LK  K   LL S
Sbjct: 147 QQAAEGILLFDREGNIKEANQAFCKQVNLQKRDVLNRKVVSFIPRNFHLKLIKIKELLDS 206

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
              +  E    H+        +       N+               +       E L  +
Sbjct: 207 GRQARGEMPITHS--EGVSVVEFTTTPYVNHELHMAILRDITEKRQMEIQLKRSEELFKD 264

Query: 325 TVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
             ++      ++   G +  AN S L + +    + +              +      K 
Sbjct: 265 LFEEAIDAIVLWDQDGRVLRANRSALKIFECSLSEILTKK-------IEDFVYPLEMSKF 317

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
             + +  +   A    +  +  N +             +          I     +    
Sbjct: 318 ESVTQELKAKGAVRDEVMFLMPNNQLKHLEFTSKLHSVDG-----YNMTIFRNVSERHQM 372

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE- 502
           ++ +     +   I E T DG+ + N  G ++  N    ++     E+++        + 
Sbjct: 373 EKSLRESEERFRKIFEGTLDGMVLTNHSGQVVDANPVALEILSSDKEELIGSDIKDIFKI 432

Query: 503 -QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDI 561
            +N       Y +++        L+   L    EE+   L +  K    S+     + DI
Sbjct: 433 KENEDEDYLEYQSKLKREGQASLLK---LKKIDEERCQHLELSSKYNLLSNLNLTVIRDI 489

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           +E  + + +L  +  ++        +  A ++HEIR P+TA+ GF ++++N         
Sbjct: 490 TEEVELQEQLRKSDTLSVV-----GELAAGIAHEIRNPMTALKGFIQLLENSMQS----- 539

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
            +  Y + I      +  I+ + L ++K ++    + ++   L   + + + L+   A  
Sbjct: 540 DHEMYFHVIKTELQRIESIITEFLILAKPQA----VQYQETDLIRIMKDTLELLNAQAVM 595

Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
             +  +  +   IP + A+   +KQ+ +NI+ NAI   P GG I I  +  + EEV + +
Sbjct: 596 HNVQFKERYDKGIPAVFAEPNQLKQVFINIVKNAIEVMPKGGLISIGISAKNEEEVRISI 655

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            D G+G+   +++K  +PF         +  GTGLGL +   +V+ + G   + S   KG
Sbjct: 656 TDEGIGIPKEKIKKLGEPFYTT------KERGTGLGLMVTFKIVEEHEGTVEVESELGKG 709

Query: 802 TLIEIIFP 809
           T   I  P
Sbjct: 710 TTFHIDLP 717



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 61/147 (41%), Gaps = 3/147 (2%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           ++ + +   + +    +L A+ + I I++++  I+  N +  +L       +LR+ F  F
Sbjct: 8   KLAEEQRPSDTIDFRGVLAASPNPILIVDKDLSIIEANSSALELLEIDENSLLRESFVQF 67

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
            +     +++ Y + +        +E  TL +T    +  + + I KL  S    L + D
Sbjct: 68  FQAVPSPILSQYESAVRQGGE---IEDETLMTTAAGTIKHIDLKITKLNNSEYAFLFLRD 124

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSD 587
           I+  ++++        +        ++
Sbjct: 125 ITSDREKQRNEHMNLHMLNNIFQQAAE 151


>gi|172059032|ref|YP_001815492.1| multi-sensor signal transduction histidine kinase [Exiguobacterium
           sibiricum 255-15]
 gi|171991553|gb|ACB62475.1| multi-sensor signal transduction histidine kinase [Exiguobacterium
           sibiricum 255-15]
          Length = 616

 Score =  307 bits (786), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 80/411 (19%), Positives = 156/411 (37%), Gaps = 26/411 (6%)

Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458
            +               +     ++  +         +  +        E E  +L S+L
Sbjct: 222 DMRRQAIEMRRGNFSRKVKVYSDDEIGQLARSFNELTD--ELLEANATTEAERRKLTSVL 279

Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
           E  +DG+   +R   ++  N     + G     I+       L       M      +  
Sbjct: 280 ENMTDGVIATDRTLRVILMNDQAKDIVGVDESGIVGTNLKDLLALGD-DFMIPEDGTMPP 338

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578
             L  + E              ++     +       + +HD++E +Q +          
Sbjct: 339 RLLDFSSEDELFLVRA--FFSPVKKHSGPIT---GMIIVLHDVTEQEQVEQD-------- 385

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
                 + +F+A VSHE+RTPLT +  + E +    +          +          ++
Sbjct: 386 ------RREFVANVSHELRTPLTTMRSYLEALAEGAYQ--DEELAPRFLETTQNETERMI 437

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
            +V DLL +SK++S +  ++       + +++ +         +RI  R         I 
Sbjct: 438 RLVTDLLQLSKMDSKEYKMNKVRFDYIQFLNDILDRHD-MTKPERIRFRRKIMKRKVYIR 496

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
            D   + Q+A NIL+NAI ++P GG I + T   +   +++ ++D GVG+    L+K  +
Sbjct: 497 GDQDKLIQVADNILTNAIKYSPEGGTITVRTMLRAK-RIVISIKDEGVGIPKANLQKIFE 555

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            F ++  ++  +  GTGLGL +AK +V A+ G  +  S   +GT I    P
Sbjct: 556 RFYRVDKARARKIGGTGLGLSIAKDVVSAHGGDIWAESEWGRGTTIYFTLP 606


>gi|295087116|emb|CBK68639.1| PAS domain S-box [Bacteroides xylanisolvens XB1A]
          Length = 637

 Score =  307 bits (786), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 117/500 (23%), Positives = 185/500 (37%), Gaps = 20/500 (4%)

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
           S    E        +    I  + Y    G   ++N  F  L   K    I         
Sbjct: 16  SELIRENSQEILSVLAAHQIALWEYDIITGKCSFSNDYFFTL-GLKDAGIIFEDIDDFYR 74

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
              P+  +        +  SD        R+  I    +           K +       
Sbjct: 75  FIHPEDIEFYKQAFAEMLSSDSKTS--QIRVRCISEQGKVIWLEDHFLSYKESCESHPGK 132

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
                         ++ ++        I+EA  + I I +    I     A   +  +PV
Sbjct: 133 LLAYTVNVTSQCEKEQHIKYLEEYNRKIIEALPEFIFIFDDNFFITDVLMAPGTILLHPV 192

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
           E +               +    + E L     + +E        +  L   +  I    
Sbjct: 193 EVLRGADGRSIYSPEVSDLFICNIRECLRDGKLKEIEYPLEV---DGSLHYFQARIAPFE 249

Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
             +     +HDI +  Q   +L  AK+ AE     KS FLA +SHEIRTPL AI+GFSE+
Sbjct: 250 -GNRVLALIHDIGDRIQRSQELIEAKRRAEDADKMKSVFLANMSHEIRTPLNAIVGFSEI 308

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           I             +EY   I R+ NL+L ++ND+LD+S+IESGK  +HF+ V +   V 
Sbjct: 309 IA----VTESEEEKMEYLEIIQRNSNLLLQLINDILDLSRIESGKSEMHFQQVEIAGLVE 364

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
           E   + QL      + ++            D   V Q+  N LSNAI  T  G  I +  
Sbjct: 365 EVEKVHQLKMKS-NVELKVIRPEGEYWTSTDRNRVMQVLFNFLSNAIKNTEKGS-ITLGL 422

Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
            H     + L V DTG G++  +L +    F ++        +GTGLGL + K++V+   
Sbjct: 423 KHE-GSWLKLYVSDTGCGISKEKLPQIFTRFEKL----NDFVQGTGLGLSICKSIVERLG 477

Query: 790 GKFYIFSTPAKGTLIEIIFP 809
           G+  + S   +G+   +  P
Sbjct: 478 GRIEVTSELGQGSTFALYLP 497


>gi|78358820|ref|YP_390269.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78221225|gb|ABB40574.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 606

 Score =  307 bits (786), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 89/595 (14%), Positives = 206/595 (34%), Gaps = 37/595 (6%)

Query: 222 YDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLN 281
            D+ ++        ++     + E     D                      +   +  +
Sbjct: 36  DDVLTESRLRARNGLEMAAWLMEEQAPFSDTASMNAWAHRFGQRTGIRITYIENGRVVAD 95

Query: 282 QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNL 341
                +   TL ++        +  N   +   +          +        V   G  
Sbjct: 96  SEIAYEQLPTLDSHRNRPEVKAALVNGEGMEVRYSTTLGKD---LIYMARTITVPDSGLD 152

Query: 342 FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401
                +       + + +++       LL     +    +    L R   +    +A  H
Sbjct: 153 GVLRIALPASVVNERLAELKEGLAAVFLLAMLASAGLAYLVTRSLVR---SIEDLAATAH 209

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
            I                           + I     +TR   + +  +  +L +IL+  
Sbjct: 210 AIGQGD------YARKIRDYPGTELRPLVDAINDMAKNTRRQMQMLTDQKGRLEAILDGI 263

Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
           +DG+ +++ EG I S N A++ +F          P    ++ +    ++  L    +   
Sbjct: 264 TDGVMVLDEEGRIHSVNTALTDMFPQVAGMEGATPLEATMQPDLQKAVDAMLRSDTAHSG 323

Query: 522 RQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSC-YSLTMHDISEWKQEKNKLSHAKKIA 578
           +   +  ++        + + + ++    P  +    L  HD+SE +Q +          
Sbjct: 324 QPMPDTGRVCNVELSGGRYMEITLVPFADPAGTRKIVLAFHDVSEREQLE---------- 373

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
                 + DF+A VSHE++TPLT+I G++E++      P G  +   +   I ++ N ++
Sbjct: 374 ----KVRRDFVANVSHELKTPLTSIKGYTEMLIESP--PAGREQNSMFLQTILKNANHMI 427

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
            +VN LL +++ +  +       V     + + +  +   A+EK I I T        + 
Sbjct: 428 KMVNSLLVLARAQHKREQTAMSAVDAAAVIRQTVREMDPAAHEKNISIETQMPETPLMVT 487

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
            D  ++ ++  N+L NA+ ++P+   + +S   T        ++D+G G+     E+  +
Sbjct: 488 GDRDALCEVFRNLLDNAVKYSPNNSAVTVSARITE-GRAAFCIKDSGPGIPEASKERIFE 546

Query: 759 PFGQIPN-SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP----AKGTLIEIIF 808
            F ++       +    GLGL + + +V ++ G+ ++ S        G    +  
Sbjct: 547 RFYRLDRDGDTHKNGSAGLGLAICRRIVKSHGGEIWVESPLDSKTGSGAAFFVTL 601



 Score = 41.9 bits (97), Expect = 0.45,   Method: Composition-based stats.
 Identities = 29/340 (8%), Positives = 71/340 (20%), Gaps = 26/340 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D  G +  ++  L          M G    + +    +     +  +L+      G+  
Sbjct: 270 LDEEGRIHSVNTALTDMF-PQVAGMEGATPLEATMQPDLQK--AVDAMLRSDTAHSGQPM 326

Query: 149 LWPIEGTNLYVPIDLAA--------LPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
                 T     ++L+         +P             F   H          + +  
Sbjct: 327 P----DTGRVCNVELSGGRYMEITLVPFADPAGTRKIVLAF---HDVSEREQLEKVRRDF 379

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
               SH  +          E            +      +     +     + L      
Sbjct: 380 VANVSHELKTPLTSIKGYTEMLIESPPAGREQNSMFLQTILKNANHMIKMVNSLLVLARA 439

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
               E++++   +    I                + +               A  +   N
Sbjct: 440 QHKREQTAMSAVDAAAVIRQTVREMDPAAHEKNISIETQMPETPLMVTGDRDALCEVFRN 499

Query: 321 LTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
           L    V   P    V     +     +F +      + +              +  D + 
Sbjct: 500 LLDNAVKYSPNNSAVTVSARITEGRAAFCIKDSGPGIPEASKERIFERFYRLDRDGDTHK 559

Query: 381 IKPV--------MLYRSDRTCIAASARLHTIQWNRENSLA 412
                        + +S    I   + L +   +      
Sbjct: 560 NGSAGLGLAICRRIVKSHGGEIWVESPLDSKTGSGAAFFV 599


>gi|222082719|ref|YP_002542084.1| two-component sensor histidine kinase/response regulator hybrid
           protein [Agrobacterium radiobacter K84]
 gi|221727398|gb|ACM30487.1| two-component sensor histidine kinase/response regulator hybrid
           protein [Agrobacterium radiobacter K84]
          Length = 777

 Score =  306 bits (785), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 111/621 (17%), Positives = 237/621 (38%), Gaps = 30/621 (4%)

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
           L  + S   E     +   +                ++  + +    +    +    E  
Sbjct: 40  LADRESRRAEDYVRVTFAIQSDILELHALLAEGASGVRGYLLTGDAAFLQPFEKANAELP 99

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
            +  +    + + E    ++  +    Q    L +  ++        N        +   
Sbjct: 100 SVFAAMRPLITDAEQRARLDGMEPLVFQKLAGLNDLLEKGRGSNQSINDDMRRTLVENKV 159

Query: 320 NLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
                                +         L + ++     I      +     +    
Sbjct: 160 -------------VLDELRARIQQMREREDALLQERTKQADAIRDRAQWITIIGAIVGLV 206

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
                ++  S+        R+ ++Q           +   +  +         ++   + 
Sbjct: 207 GCVVAIILMSNGIVR----RVASLQKTARLLAMGQPVTSGEHARDELGALSRALQEASLL 262

Query: 440 TRINKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
            +  +  +     +   +++   D GI  ++++G ++S N    ++ GY  ++I+ + F+
Sbjct: 263 LKQRENALRESEERFRLLVDGVHDYGIFGLDQQGRVVSWNAGAERIKGYTADEIIGEHFS 322

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCY 554
            F  Q     +     E+        +E       K+       +++  L         +
Sbjct: 323 RFYPQEVRDTLPS--QELERAQADGRVEDEGWRVRKDGSRFWANVVVTALHDENGNPRGF 380

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
           S    DI++ K+ + +L  A+  AE+ S  +S F +R+SHE RTPL +I+GF+++++   
Sbjct: 381 SKITRDITDRKRNEEELLAARYKAEQASEARSAFHSRLSHEFRTPLNSILGFAQILEMD- 439

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
              L  P        I R+G  +L +++DLLD+++I++G+M L+ E +   E V EA+ L
Sbjct: 440 ---LDEPDAQASLAQILRAGRHLLSLLDDLLDLARIDAGRMELYIETLDAGEIVGEAVDL 496

Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
            +  A  +++ I     +     +  D R   Q+ LN+LSNAI F   GG + IST    
Sbjct: 497 ARPLAAPRKVGIVVEVDHAAGAAVTVDRRRFLQVLLNLLSNAIKFNREGGGLRISTRLVD 556

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
            + + + + DTG G+   + E+  +PF ++  +      GTGLGL L++ ++ A  G+  
Sbjct: 557 GDMLAIDISDTGFGIAPNKKERLFQPFERL-GADSNATSGTGLGLALSQHLMQAMGGRLE 615

Query: 794 IFSTPAKGTLIEIIFPLYDTS 814
           + ST  +GT   +  P   +S
Sbjct: 616 LGSTGTEGTTFTVFAPSAPSS 636



 Score = 73.1 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/262 (10%), Positives = 68/262 (25%), Gaps = 13/262 (4%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID--PNNHIGDLLKRQNTW 143
            + +D  G +   +    +  G  A ++IG            D  P+  +    +     
Sbjct: 289 IFGLDQQGRVVSWNAGAERIKGYTADEIIGEHFSRFYPQEVRDTLPSQELERA-QADGRV 347

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +      +G+  +  + + AL  +  N    GF    I                   K
Sbjct: 348 EDEGWRVRKDGSRFWANVVVTAL--HDENGNPRGFSK--ITRDITDRKRNEEELLAARYK 403

Query: 204 FSHLHEIKKGHSSVEKEKYD------IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257
                E +    S    ++       +   Q     L   +  +SL +       +L   
Sbjct: 404 AEQASEARSAFHSRLSHEFRTPLNSILGFAQILEMDLDEPDAQASLAQILRAGRHLLSLL 463

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
              L  +   +   +    T++  +   +         +      +   +H + +A   +
Sbjct: 464 DDLLDLARIDAGRMELYIETLDAGEIVGEAVDLARPLAAPRKVGIVVEVDHAAGAAVTVD 523

Query: 318 GENLTPETVDKCPIPFFVYSHG 339
                   ++           G
Sbjct: 524 RRRFLQVLLNLLSNAIKFNREG 545


>gi|283851415|ref|ZP_06368696.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283573153|gb|EFC21132.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 773

 Score =  306 bits (785), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 95/411 (23%), Positives = 167/411 (40%), Gaps = 46/411 (11%)

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI----AIINREGI-----ILSTNRAV 481
                   + +     +      L ++ E+   G+     + +  G      IL  N   
Sbjct: 218 IDALRVRAEQKKATEALRENETSLRALYESMDQGLCVHELVYDEAGRPANYRILEVNPKY 277

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
             + G   ++ +       L +            +         E          +  S+
Sbjct: 278 EAILGLTRQEAVGA-LATSLYRVDRPPFLDSYARVAQTGEPAFFE---TYFAPLGRYFSI 333

Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH------------------AKKIAEKESS 583
                  P    +++   DI+  +  + +L                    AK+ AE  + 
Sbjct: 334 SAFC---PRPGKFAVLFKDITTRRNAEEELKRLNETLEQRVLEQTGELRSAKEAAEAANR 390

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
            KS FLA +SHEIRTP+  I+G +E+       P    +  EY   + +SG+ +LDI+ND
Sbjct: 391 AKSQFLANMSHEIRTPMNGILGMTELTLLMDMPP----QAGEYLRLVLQSGHALLDIIND 446

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLR 702
           +LD+SKIESG   L  +P  L E +    + + + A EK + +     +++P  I+ D  
Sbjct: 447 ILDLSKIESGHAVLDNKPFRLHECLGSTFNALAITAREKGLSLYHCIDSHVPEHIVGDQG 506

Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSN------EEVILRVRDTGVGMTNYELEKA 756
            ++Q+ +NI+ NAI FTP GG + ++              ++ +V D G+G+    L + 
Sbjct: 507 RLRQVLINIVGNAIKFTPKGG-VRVTVGRDGQPAPPGSARLLFQVADDGIGIPKDGLGEV 565

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
              F QI  S   R  GTGLGL ++K++V    G+ +  S   +G+L    
Sbjct: 566 FHAFSQIGLSSHTRFGGTGLGLSISKSLVAMMGGRIWAESKLGQGSLFSFT 616



 Score = 41.6 bits (96), Expect = 0.60,   Method: Composition-based stats.
 Identities = 45/393 (11%), Positives = 90/393 (22%), Gaps = 38/393 (9%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           DA    + +S+  P+   + A    G R  D        P    G  L+ Q     +   
Sbjct: 4   DAKPRQRLLSKAAPR--NHSASDWEGERP-DPCLPSAASPRGGPGAALEEQLRRSKRAVR 60

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL------DKK 203
                T L V     A  +    R      G+ +  +   + DP+   + L      D  
Sbjct: 61  AYSACTRLLVKTAEEADLLCGVCRLMVEDAGYRMAWIGIPEKDPQKTVRPLVHWGFEDGY 120

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL-RMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
             ++          +           P      + +    L    A +     +   PL+
Sbjct: 121 LENIQISWANDGKGQGPTGRAVRSGEPVACRNMLSDPKLLLWRKEAARRGYASSIALPLV 180

Query: 263 TSEE-SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
              E +S+                          +               +    E E  
Sbjct: 181 VRGEVTSVLMIYAGEAEAFEGDEFNLLVELANALTFGIDALRVRAEQKKATEALRENETS 240

Query: 322 TPETVDKCPIPFFVYS----------HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
                +       V+           +  +   NP +  +      + +         +D
Sbjct: 241 LRALYESMDQGLCVHELVYDEAGRPANYRILEVNPKYEAILGLTRQEAVGALATSLYRVD 300

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
            P   D+ A                      +           F P              
Sbjct: 301 RPPFLDSYA-----RVAQTGEPAFFETYFAPL---GRYFSISAFCPRPGK--------FA 344

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCS-ILEATSD 463
            +  +    R  + +++     L   +LE T +
Sbjct: 345 VLFKDITTRRNAEEELKRLNETLEQRVLEQTGE 377



 Score = 39.6 bits (91), Expect = 2.5,   Method: Composition-based stats.
 Identities = 21/208 (10%), Positives = 59/208 (28%), Gaps = 21/208 (10%)

Query: 33  GFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAH 92
           G +  + + E        + N T        + +     +  V+D   R   +       
Sbjct: 217 GIDALRVRAEQKKATEALRENETSLRA-LYESMDQGLCVHELVYDEAGRPANY------- 268

Query: 93  GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPI 152
             + E++ +    +G    + +G     +  +      +    + +     + +T   P+
Sbjct: 269 -RILEVNPKYEAILGLTRQEAVGALATSLYRVDRPPFLDSYARVAQTGEPAFFETYFAPL 327

Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212
                      +      R  +F+      +        +     KRL++        + 
Sbjct: 328 G-------RYFSISAFCPRPGKFA-----VLFKDITTRRNAEEELKRLNETLEQRVLEQT 375

Query: 213 GHSSVEKEKYDIFSQQSPPPHLRMKNKV 240
           G     KE  +  ++        M +++
Sbjct: 376 GELRSAKEAAEAANRAKSQFLANMSHEI 403


>gi|170761578|ref|YP_001785677.1| sensory box histidine kinase [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169408567|gb|ACA56978.1| sensory box histidine kinase [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 617

 Score =  306 bits (785), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 85/362 (23%), Positives = 162/362 (44%), Gaps = 10/362 (2%)

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLF-GYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           ++E   D I I  ++  I+  N + ++L       ++       F+ +     + + L  
Sbjct: 222 LIENARDAIIIHRKD-KIVFANESAAELLICSNNNELQNLNINSFILKEEQKKIRNKLEL 280

Query: 516 ILSLDLRQTLEKITLGSTKEEKL-LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA 574
           +          +  + + K +K+ +                  + DI+  KQ +      
Sbjct: 281 VYRNKRDIVCVEQVIQNNKRKKINVESISTYIIYNNKPAILSILRDITSQKQVEKLQKDV 340

Query: 575 KKIAEKESSHK------SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
           +K  E  +  +      +DFLA++SHE++TPL  I    +++   +       +  +Y  
Sbjct: 341 EKNIELLNESREYNKLITDFLAKISHELKTPLNVIFTAVQILDLYKEDAKSYDKKEQYIK 400

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I ++   ++ ++N+LLD +K++SG + L+    ++   V E    V  YA  K I I  
Sbjct: 401 VIKQNCYRLMRLINNLLDTTKLDSGYLKLNLVNCNIVNLVEEITLSVVYYAESKNINIIF 460

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748
                   +  D   +++I LN+LSNAI FT SGG I ++     +  +I+ V+DTG+G+
Sbjct: 461 DTDVEEKIMAVDPDKIERIVLNLLSNAIKFTGSGGNIYVTVKDFEDN-IIISVKDTGIGI 519

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
              ++E     F Q+  + +   EG+G+GL L K+ V+ + G   I S   KG+   I  
Sbjct: 520 PENKIENIFDRFVQVDKTLRRNKEGSGIGLYLVKSFVNMHEGTIDIQSEIGKGSEFIINI 579

Query: 809 PL 810
           P+
Sbjct: 580 PV 581


>gi|302340016|ref|YP_003805222.1| PAS/PAC sensor hybrid histidine kinase [Spirochaeta smaragdinae DSM
           11293]
 gi|301637201|gb|ADK82628.1| PAS/PAC sensor hybrid histidine kinase [Spirochaeta smaragdinae DSM
           11293]
          Length = 632

 Score =  306 bits (785), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 98/488 (20%), Positives = 191/488 (39%), Gaps = 20/488 (4%)

Query: 325 TVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
            ++  P          ++ +AN +      +++ +      G            +     
Sbjct: 20  VLENLPEICCYLDTDQHIVWANKAARKNLSFEAFE------GEKVFCVNLWRGQSEICPT 73

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
             + +S +T     A L     +   +     + F   N   +         +  + R  
Sbjct: 74  CPVKKSLKTGEIEKAIL-----DHGANGIWEVVAFPLKNPAGKITGAMEFAYDQTEIRRK 128

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
             ++E +  +   + + + +    +++EG I+  N A  K  GY  E+++ + F  FL++
Sbjct: 129 GEELEEQYQKYLMLYDKSPNPYQALDQEGNIIDVNPAWEKTLGYTKEEVIGRWFGSFLKE 188

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY--SLTMHDI 561
                         S    +T E       +    +++   I+     +         DI
Sbjct: 189 EYIERFRSQFIAADSEYDERTTEYEIRKKDRTFLRIAMEGCIRFPHEQTGMTSYCVFKDI 248

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           +  ++ +  L       ++ ++ KS  +A VSHE+RTPL  I+GF  +++N+   P+   
Sbjct: 249 TTQREMQQALEVGISREKELNNKKSMLMANVSHELRTPLNGILGFVSLLQNRVKDPIE-- 306

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
             +EY   I  SG  +LDI+  LL +S IE  K +      ++D  V   +S+ +     
Sbjct: 307 --LEYLEMIRHSGEKLLDIIESLLTLSSIERRKNDDTQRHFNIDHLVRSLVSMYESDGRN 364

Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
           +R+  +      + R++ D  +V  I   +LSNA  F+ SG +I    +    + VI+  
Sbjct: 365 ERLQYKVVVDERLKRLMGDGDAVSHILNQLLSNASKFSESG-EISCKVSAQKKQMVIIL- 422

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            D G+G+   E +K    F Q          G G+GL + K  VD+  G   + S    G
Sbjct: 423 NDQGIGIPKEEQDKVFDRFYQCEQPITRTYGGIGIGLSIVKEEVDSLGGTIELESEYGVG 482

Query: 802 TLIEIIFP 809
           T + +  P
Sbjct: 483 TKVTVKLP 490



 Score = 46.6 bits (109), Expect = 0.016,   Method: Composition-based stats.
 Identities = 18/154 (11%), Positives = 39/154 (25%), Gaps = 8/154 (5%)

Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKY 354
           +                   +E         DK P P   +   GN+   NP++     Y
Sbjct: 113 TGAMEFAYDQTEIRRKGEELEEQYQKYLMLYDKSPNPYQALDQEGNIIDVNPAWEKTLGY 172

Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
              + I    G         L +    +    + +  +        + I+      L + 
Sbjct: 173 TKEEVIGRWFG-------SFLKEEYIERFRSQFIAADSEYDERTTEYEIRKKDRTFLRIA 225

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
                +       M    +  +    R  ++ +E
Sbjct: 226 MEGCIRFPHEQTGMTSYCVFKDITTQREMQQALE 259



 Score = 45.4 bits (106), Expect = 0.037,   Method: Composition-based stats.
 Identities = 27/234 (11%), Positives = 63/234 (26%), Gaps = 6/234 (2%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D  G + +++    KT+G    ++IG          +I+            ++ Y + T
Sbjct: 153 LDQEGNIIDVNPAWEKTLGYTKEEVIGRWFGSFLKEEYIE---RFRSQFIAADSEYDERT 209

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                       + +A         E +G   + +        + +   +    +   L+
Sbjct: 210 TEYEIRKKDRTFLRIAMEGCIRFPHEQTGMTSYCVFKDITTQREMQQALEVGISREKELN 269

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
             K    +    +              ++N+V           ++++     LL   ES 
Sbjct: 270 NKKSMLMANVSHELRTPLNGILGFVSLLQNRV--KDPIELEYLEMIRHSGEKLLDIIESL 327

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
           L         N +   +      L  +    +E              DE     
Sbjct: 328 LTLSSIERRKNDDTQ-RHFNIDHLVRSLVSMYESDGRNERLQYKVVVDERLKRL 380


>gi|302381789|ref|YP_003817612.1| multi-sensor signal transduction histidine kinase [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302192417|gb|ADK99988.1| multi-sensor signal transduction histidine kinase [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 643

 Score =  306 bits (785), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 111/641 (17%), Positives = 233/641 (36%), Gaps = 21/641 (3%)

Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE 245
            +R       LG            +    S +        ++      +R+   +     
Sbjct: 7   WSRAARAWADLGLGSKGLIVLALPLAILLSGIGALHLSGRAEAEAEARVRLTFAIQRDIH 66

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
                     +       +   +  E        L +   +    T     ++    +  
Sbjct: 67  EVHALLAEAASGVRGYRLTGRRAFLEPYIKAEALLPETLARLRQTTRDPEIRQRLARVDT 126

Query: 306 ---RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEI 362
              +    L+         T E V+   +   + ++  +  A  + +   + +    +E 
Sbjct: 127 LVVQKRRGLAQLAAMPGAGTAEGVEAPTVAGALVANKAVLDALRAEIDAMQRRESQLLEQ 186

Query: 363 AGG-LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ---WNRENSLAMTFIPF 418
                                  +L       +  +  +  ++    + E       +  
Sbjct: 187 RQAKADAERRRTWTLTAVLAGIGLLGGLAAAQLLFTGIVRRVRGLERDAERLERGEPLSL 246

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINREGIILST 477
               Q         +       R  +  +     +   ++E   D GI  ++ EG ++S 
Sbjct: 247 ADEAQDEIGRLARRLVQAGDLLRSREAALREGEERYRRVIEGVRDYGIFALDLEGRVVSW 306

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
           N    ++ G+  ++IL + F+ F      +     +  + +      +E       ++  
Sbjct: 307 NTGAERIKGWTADEILGQHFSTFYPAEARAETP--MRLLEAARRDGRVEDEGWRVRRDGG 364

Query: 538 LLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
                ++I  L   +           D++E +Q +  L HA+  AE+ S  KSDFL+R+S
Sbjct: 365 RFWANVVITALHDETGTLTGFSKVTRDVTERRQAEEALGHARAEAERASRAKSDFLSRMS 424

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HE+RTPLTAI+GF++++     G           + I R+G  +L ++ ++LDI++IE+G
Sbjct: 425 HELRTPLTAILGFNQLL--GMDGETLTDDQRHGVDQISRAGGHLLAMIEEVLDIARIEAG 482

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713
              L   P+     +++   L+   A    + +R      +  +LAD R+  QI LN+LS
Sbjct: 483 GHALAPVPLDPAPLLADVRDLIAPQAQAAGVEVRIEGDAGL-SVLADRRATVQIVLNLLS 541

Query: 714 NAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
           NAI + P+GG + ++    ++  V + VRD G G+    +++   PF ++   +    +G
Sbjct: 542 NAIKYGPAGGVVTVTL-VGASGRVRIEVRDEGPGVPPELVDRLFIPFDRLDAERWSGAQG 600

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           +GLGL L++ +  A  G+         G    +  P   + 
Sbjct: 601 SGLGLALSRGLARAQGGEVSYHPP---GATFILELPASPSH 638



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 22/239 (9%), Positives = 56/239 (23%), Gaps = 4/239 (1%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + +D  G +   +    +  G  A +++G                 +  L   +     
Sbjct: 294 IFALDLEGRVVSWNTGAERIKGWTADEILGQHFSTF-YPAEARAETPMRLLEAARRDGRV 352

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +   W +         ++    ++      +GF    +                   +  
Sbjct: 353 EDEGWRVRRDGGRFWANVVITALHDETGTLTGFSK--VTRDVTERRQAEEALGHARAEAE 410

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
                K    S    +           +  +     +LT+   H  D +      LL   
Sbjct: 411 RASRAKSDFLSRMSHELRTPLTAILGFNQLLGMDGETLTDDQRHGVDQISRAGGHLLAMI 470

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
           E  L +                    L  + ++     +      +    D G ++  +
Sbjct: 471 EEVL-DIARIEAGGHALAPVPLDPAPLLADVRDLIAPQAQAAGVEVRIEGDAGLSVLAD 528


>gi|332534443|ref|ZP_08410282.1| putative sensory box sensor histidine kinase/response regulator
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332036096|gb|EGI72572.1| putative sensory box sensor histidine kinase/response regulator
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 1252

 Score =  306 bits (785), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 101/512 (19%), Positives = 194/512 (37%), Gaps = 34/512 (6%)

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIE 361
           L            +    L    ++  P    F    G+    N +F           + 
Sbjct: 388 LQSEKLSRSYEAKERHLALLNTMLNSVPDLIYFKNIDGSFLGCNKAFEAYIGKDQTALVG 447

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
               +  L D  +  +    + +          +   R+ T       S  +T  PF   
Sbjct: 448 KY--VDDLGDNDQQINALEKQVLQNRN------SVEKRIET----DTKSYQLTIAPFYNE 495

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
           +Q    +   GI  +  + +     ++    +  S +E  ++ + +++ E  IL  N+A 
Sbjct: 496 HQ--HLLGTMGIGRDITEQQQALLALKSSESKFRSAIEFAANCVVLLSLEHTILQVNKAA 553

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
            K F    + ++ +      + +    +   L ++L    R     ++ G       LS+
Sbjct: 554 RKQFS-EQQVLVGEQLKALFDDSQWQQIKTTLAQLLDDKKRVYHLTLSQGRLTSWLQLSV 612

Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
            ++  +    + Y + + D+S        L+ +K  AE+ +  KS F+A +SHEIRTPL 
Sbjct: 613 SLVWDENRDPAYYVIHIQDVS-------ALTKSKLDAERATLAKSRFIANLSHEIRTPLN 665

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           A++G  +++  Q        + ++  +    +   +L ++N +LD ++IES + +L    
Sbjct: 666 AVLGLLDMLIEQGL----TQKQLQQTDQAKHAAQSLLLMLNRMLDFARIESSQTDLKQAS 721

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTP 720
            S+ E V    SL       K I         I P ++ D   ++QI  N+L+NA+ FT 
Sbjct: 722 FSMVELVDICESLTAPLCEGKGIEFVIDIDPLIAPDLICDSIRLQQILGNLLTNAVKFTK 781

Query: 721 SGGQIIISTTHTSNE-----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           +G  I +      +       +  +V DTG+G+   +  +    F Q   S      G G
Sbjct: 782 TGS-ITLKMELIESNSLEQQHICFKVIDTGMGIDEADQRRLFDAFTQGDESSTRIHHGVG 840

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           LGL + K  V    G+  + S    G      
Sbjct: 841 LGLAIVKHAVSLMGGEIALKSKKGHGCEFYFS 872


>gi|312960964|ref|ZP_07775469.1| two-component sensor/regulator [Pseudomonas fluorescens WH6]
 gi|311284622|gb|EFQ63198.1| two-component sensor/regulator [Pseudomonas fluorescens WH6]
          Length = 470

 Score =  306 bits (785), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 106/427 (24%), Positives = 186/427 (43%), Gaps = 50/427 (11%)

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK-PFTVF 500
             +R +        +I  +        + +G+I   N    ++ GY   D++ +      
Sbjct: 42  KRQRTLLKAGALQDAIFNSAYFSSIATDEKGVIQIFNVGAERMLGYAAADVVNRITPADI 101

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLE-------------KITLGSTKEEKLLSLRIIIKK 547
            +     +    L+  L   +    E                    ++   LS  + +  
Sbjct: 102 SDPAELIIRAAALSLELDTPITPGFEALVFKASRGIEDIYELTYIRQDGSRLSAMVSVTA 161

Query: 548 LPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEK-------ESSHKSDFLARVSHEI 596
           L   S     Y L   D +  KQE+ +    ++  E+        S  KS+FLA +SHE+
Sbjct: 162 LRNRSDMIIGYLLIGTDNTARKQEEAQRKRFERALEEKNLELEHASRMKSEFLATMSHEL 221

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTPL A+IGFSE +K+   G + +    EY   I  SG  +L ++ND+LD+SK+E+G M+
Sbjct: 222 RTPLNAVIGFSEALKDGLVGAMSD-TQREYIGDIFTSGQHLLSLINDILDLSKVEAGMMD 280

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716
           L  EPV L   ++ ++ +V+  A ++RI ++     ++  ++ D R  KQI  N+L+NA+
Sbjct: 281 LELEPVELAGLLANSLLIVREKAAQQRIQLKLDSQGDLGTLMLDQRKTKQIVYNLLANAV 340

Query: 717 HFTPSGGQIIISTTHTSNEEV-----------------------ILRVRDTGVGMTNYEL 753
            F+   G + ++      ++V                        L V DTG+G+   ++
Sbjct: 341 KFSAHAGFVHLAVCEVDRDQVGLVPGDWPVYGFALQPSVHQRFLELSVSDTGIGIAADDM 400

Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
            K  K F QI +S   + EGTGLGL + K + D + G   + S    G    +  PL+  
Sbjct: 401 GKLFKAFSQIDSSLARKFEGTGLGLAMVKQLTDLHGGSVAVASREGLGARFVVWLPLHR- 459

Query: 814 SHPHDCI 820
           + P + +
Sbjct: 460 AKPTEAV 466



 Score = 40.0 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 30/255 (11%), Positives = 69/255 (27%), Gaps = 22/255 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGM-RLCDVSDILHI------------DPNNHIGD 135
            D  G ++  +    + +G  A  ++      D+SD   +             P     +
Sbjct: 68  TDEKGVIQIFNVGAERMLGYAAADVVNRITPADISDPAELIIRAAALSLELDTPITPGFE 127

Query: 136 LL----KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN 191
            L     R      + T    +G+   +   ++   + +R+    G+   G    N    
Sbjct: 128 ALVFKASRGIEDIYELTYIRQDGS--RLSAMVSVTALRNRSDMIIGYLLIGT--DNTARK 183

Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD 251
              A  KR ++     +   +  S ++ E     S +   P   +     +L +      
Sbjct: 184 QEEAQRKRFERALEEKNLELEHASRMKSEFLATMSHELRTPLNAVIGFSEALKDGLVGAM 243

Query: 252 DVLKTEKYPL-LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310
              + E      TS +  L    D   ++  +             +      L      +
Sbjct: 244 SDTQREYIGDIFTSGQHLLSLINDILDLSKVEAGMMDLELEPVELAGLLANSLLIVREKA 303

Query: 311 LSAYFDEGENLTPET 325
                    +   + 
Sbjct: 304 AQQRIQLKLDSQGDL 318


>gi|293370768|ref|ZP_06617314.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f]
 gi|292634128|gb|EFF52671.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f]
          Length = 635

 Score =  306 bits (785), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 117/500 (23%), Positives = 185/500 (37%), Gaps = 20/500 (4%)

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
           S    E        +    I  + Y    G   ++N  F  L   K    I         
Sbjct: 14  SELIRENSQEILSVLAAHQIALWEYDIITGKCSFSNDYFFTL-GLKDAGIIFEDIDDFYR 72

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
              P+  +        +  SD        R+  I    +           K +       
Sbjct: 73  FIHPEDIEFYKQAFAEMLSSDSKTS--QIRVRCISEQGKVIWLEDHFLSYKESCESHPGK 130

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
                         ++ ++        I+EA  + I I +    I     A   +  +PV
Sbjct: 131 LLAYTVNVTSQCEKEQHIKYLEEYNRKIIEALPEFIFIFDDNFFITDVLMAPGTILLHPV 190

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
           E +               +    + E L     + +E        +  L   +  I    
Sbjct: 191 EVLRGADGRSIYSPEVSDLFICNIRECLRDGKLKEIEYPLEV---DGSLHYFQARIAPFE 247

Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
             +     +HDI +  Q   +L  AK+ AE     KS FLA +SHEIRTPL AI+GFSE+
Sbjct: 248 -GNRVLALIHDIGDRIQRSQELIEAKRRAEDADKMKSVFLANMSHEIRTPLNAIVGFSEI 306

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           I             +EY   I R+ NL+L ++ND+LD+S+IESGK  +HF+ V +   V 
Sbjct: 307 IA----VTESEEEKMEYLEIIQRNSNLLLQLINDILDLSRIESGKSEMHFQQVEIAGLVE 362

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
           E   + QL      + ++            D   V Q+  N LSNAI  T  G  I +  
Sbjct: 363 EVEKVHQLKMKS-NVELKVIRPEGEYWTSTDRNRVMQVLFNFLSNAIKNTEKGS-ITLGL 420

Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
            H     + L V DTG G++  +L +    F ++        +GTGLGL + K++V+   
Sbjct: 421 KHE-GSWLKLYVSDTGCGISKEKLPQIFTRFEKL----NDFVQGTGLGLSICKSIVERLG 475

Query: 790 GKFYIFSTPAKGTLIEIIFP 809
           G+  + S   +G+   +  P
Sbjct: 476 GRIEVTSELGQGSTFALYLP 495


>gi|219670060|ref|YP_002460495.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfitobacterium hafniense DCB-2]
 gi|219540320|gb|ACL22059.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfitobacterium hafniense DCB-2]
          Length = 468

 Score =  306 bits (785), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 82/363 (22%), Positives = 166/363 (45%), Gaps = 25/363 (6%)

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
             E  ++ +IL    +G+  ++  G I+  NRA  +LFG   E +  K F+         
Sbjct: 112 RQEAQKIQAILAGMQEGVISLDHVGRIVLLNRAAERLFGREQEAVRDKHFSEL---CGFE 168

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQE 567
            +   +T+ L      + +     ++K      +  I  +   S    +  +DI+E ++ 
Sbjct: 169 ELGDLVTQALEKG--SSGQIELATNSKLMIRAQVSPISGERARSQGAVIVCYDITEIRRL 226

Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE-Y 626
           +                +++F+  VSHE+RTPLT+I GF E + +   G    P   E +
Sbjct: 227 E--------------LLRTEFVGNVSHELRTPLTSIKGFVETLLD---GASEVPHLRERF 269

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
            N I +    +  +V++LL +S+IE+ + +       + EA  +   +++ YA  K++ +
Sbjct: 270 LNIIHKETLRLQRLVDELLTLSRIENQRQDAGQGMSKVQEAYEKIRPVIEPYAEAKKVEL 329

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
                 ++P +   +  + Q+ LN++ NA+ +T  G ++ +      + +++L   DTG 
Sbjct: 330 EIKIPKDLPEVAMGIDLLSQVLLNLMENAVKYTVKG-KVWLH-AFHDDGKILLEFGDTGC 387

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+   +L +  + F ++  ++     GTGLGL + K +V+   GK  + S P  G++   
Sbjct: 388 GIPKEDLPRIFERFYRVDKARSREQGGTGLGLSIVKHIVEGVKGKITVASEPGSGSVFIC 447

Query: 807 IFP 809
             P
Sbjct: 448 ELP 450



 Score = 41.6 bits (96), Expect = 0.55,   Method: Composition-based stats.
 Identities = 27/241 (11%), Positives = 68/241 (28%), Gaps = 14/241 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D  G +  ++    +  G     +      ++     +   + +   L++ ++   +  
Sbjct: 132 LDHVGRIVLLNRAAERLFGREQEAVRDKHFSELCGFEEL--GDLVTQALEKGSSGQIELA 189

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                 TN  + I     PI        G     + +             R +   +  H
Sbjct: 190 ------TNSKLMIRAQVSPISGERARSQGA--VIVCYDITEIRRLE--LLRTEFVGNVSH 239

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           E++   +S++     +    S  PHLR   +  ++      +   L  E   L   E   
Sbjct: 240 ELRTPLTSIKGFVETLLDGASEVPHLR--ERFLNIIHKETLRLQRLVDELLTLSRIENQR 297

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
               +    +       +          K   E    ++ P ++   D    +    ++ 
Sbjct: 298 QDAGQGMSKVQEAYEKIRPVIEPYAEAKKVELEIKIPKDLPEVAMGIDLLSQVLLNLMEN 357

Query: 329 C 329
            
Sbjct: 358 A 358


>gi|197120239|ref|YP_002140666.1| PAS/PAS domain-containing sensor histidine kinase response
           regulator [Geobacter bemidjiensis Bem]
 gi|197089599|gb|ACH40870.1| sensor histidine kinase response regulator, PAS and PAS
           domain-containing protein [Geobacter bemidjiensis Bem]
          Length = 673

 Score =  306 bits (785), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 93/560 (16%), Positives = 196/560 (35%), Gaps = 48/560 (8%)

Query: 277 TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV- 335
             +  Q   +     LQ       E    +++        E        +D      F+ 
Sbjct: 4   ASDPPQPDPQDALAALQQKLAGLGESSMRKSYYPELQERLEELERFKALLDHSNESIFLI 63

Query: 336 -YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394
             S G +   N +    T +   + ++      +L D   L  + A + ++    +   +
Sbjct: 64  EVSTGRIVDLNDAASRQTGWSRDELLQQ-----SLFDLSNLQQSPAAEALVRSPEETGSV 118

Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
              A     + +     A          QF EN     +  +    +  +  +      L
Sbjct: 119 RMLAVTELHRKDGGRFPAEI---TLNRMQFRENSYVLAVARDITQRKAMEEALRESEEFL 175

Query: 455 CSILEATSDGIAIINREG-IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
            +I++     +     +G   ++ N+A  ++FG    ++L +       +          
Sbjct: 176 KNIVDHIPAVVFAKEVQGLRFVTINKACQEVFGLSRAEVLGRTNYDLFPKEQAEFFTKMD 235

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKN 569
            E L+      + + T+ +   +++  LR+    L  +            DI+E KQ + 
Sbjct: 236 RETLAKGELVEVPEETITTANGDRI--LRVKKIPLFDNQGKERFLLGIAEDITERKQLEE 293

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           KL  ++K+              V+H+    L  I+G+  ++ N+   P    R  E    
Sbjct: 294 KLLQSQKM-----EAIGQLAGGVAHDFNNILMVILGYGSILLNEGALP---ARQKEQVEQ 345

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I  + +    + +DLL  S+    K  +    ++L++ +      +      + + ++  
Sbjct: 346 IMNAADKAAKLTSDLLAFSR----KQVIKPATMNLNDIILHVEKFLS-RIIGEDVQLKAR 400

Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH--------------TSNE 735
            A    ++  D   ++Q+ +N+ +NA    P GG + I T+                   
Sbjct: 401 LAPRELQVDVDRGQIEQVLINLATNARDAMPKGGLLTIETSSLQIDEAFVQANGIGAPGP 460

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
             ++ + DTGVGM      +  +PF        I G+GTGLG+ +   ++  + G   ++
Sbjct: 461 YAVISISDTGVGMDEQTRRRIFEPFFTTK----IVGKGTGLGMSIVYGIIQQHNGFVNVY 516

Query: 796 STPAKGTLIEIIFPLYDTSH 815
           S P  GT   I  P  + S 
Sbjct: 517 SEPQLGTTFRIYLPFSEKSA 536



 Score = 43.9 bits (102), Expect = 0.10,   Method: Composition-based stats.
 Identities = 18/251 (7%), Positives = 65/251 (25%), Gaps = 11/251 (4%)

Query: 93  GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPI 152
           G + ++++   +  G    +++   L D+S++        +    +   +          
Sbjct: 68  GRIVDLNDAASRQTGWSRDELLQQSLFDLSNLQQSPAAEALVRSPEETGSVRMLAVTELH 127

Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212
                  P ++    +  R   +       +              +  ++   ++ +   
Sbjct: 128 RKDGGRFPAEITLNRMQFRENSYV----LAVARDITQRKAMEEALRESEEFLKNIVDHIP 183

Query: 213 GHSSVEK-EKYDIFSQQSP--PPHLRMKNKVSSLTEYYAHKDDVLK--TEKYPLLTSEES 267
                ++ +     +            + +V   T Y     +  +  T+      ++  
Sbjct: 184 AVVFAKEVQGLRFVTINKACQEVFGLSRAEVLGRTNYDLFPKEQAEFFTKMDRETLAKGE 243

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP--ET 325
            +   E+  T        +     L +N  +    L      +     +E    +   E 
Sbjct: 244 LVEVPEETITTANGDRILRVKKIPLFDNQGKERFLLGIAEDITERKQLEEKLLQSQKMEA 303

Query: 326 VDKCPIPFFVY 336
           + +        
Sbjct: 304 IGQLAGGVAHD 314


>gi|328553705|gb|AEB24197.1| sporulation-specific ATP-dependent protein histidine kinase
           [Bacillus amyloliquefaciens TA208]
 gi|328911447|gb|AEB63043.1| sporulation-specific ATP-dependent protein histidine kinase
           [Bacillus amyloliquefaciens LL3]
          Length = 606

 Score =  306 bits (785), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 101/505 (20%), Positives = 195/505 (38%), Gaps = 32/505 (6%)

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
                 +    G       V+  P P +V  +G + YAN + L +    S D +      
Sbjct: 130 RKAEQQSAEAAGNGEFERLVEMLPNPLYVSINGTIAYANNAMLAMLGADSKDAVIGRQSY 189

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
                  +  D    + V + +             T +      + +         +   
Sbjct: 190 E--FIEEEYHDIVKNRIVRMQKGME----VGMIEQTWRRLDGTPVHLEVKAAPTTYK--N 241

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
              +  +  +    +  +  ++    +   +++ + D IA+I      +  N +   LF 
Sbjct: 242 QRAELLLLIDISSRKKFQTILQKSRERYQLLIQNSIDTIAVI-HNDKWVFMNESGISLFE 300

Query: 487 Y-PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS-LRII 544
               ED++ K     L       +   +  I+       + K +  + K   + + +  I
Sbjct: 301 AETYEDLIGKNVYDQLHPCDHDGVKQRIRNIIDRKTESEIIKQSWFTFKNRLIYTEMVCI 360

Query: 545 IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
                      + + DISE KQ +  +  ++K++           A ++HEIR PLTAI 
Sbjct: 361 PTTFFGEMAVQVILRDISERKQTEELMLKSEKLSIA-----GQLAAGIAHEIRNPLTAIK 415

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           GF +++K              Y   +    + +  I+++LL ++K +   +    E V+L
Sbjct: 416 GFLQLMK------PTMEENEHYFEIVFSELSRIELILSELLMLAKPQHNAVK---ERVNL 466

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724
            + +SE  +L++  AN K I I+T +  +   I  D   +KQ+ +N++ NA+   P GG 
Sbjct: 467 KKIISEVTALLETQANLKGIFIKTDYERDSMFINGDQNQLKQVFINLIKNAVESMPDGGT 526

Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
           + I         V + V+D G G+    L++  +PF         + +GTGLGL +   +
Sbjct: 527 VHI-LMTEDEYSVNVTVKDEGDGIPENVLKRIGEPFLTT------KEKGTGLGLMVTFNL 579

Query: 785 VDANMGKFYIFSTPAKGTLIEIIFP 809
           +  + G   + S P KGT   I FP
Sbjct: 580 IKNHQGAIQVDSKPDKGTAFHITFP 604



 Score = 38.1 bits (87), Expect = 6.1,   Method: Composition-based stats.
 Identities = 20/197 (10%), Positives = 58/197 (29%), Gaps = 11/197 (5%)

Query: 272 QEDFHTINLNQYTKK--QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
           ++ +  ++      +      T +N   E    +   +         +        +   
Sbjct: 217 EQTWRRLDGTPVHLEVKAAPTTYKNQRAELLLLIDISSRKKFQTILQKSRERYQLLIQNS 276

Query: 330 PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389
                V  +    + N S + L + ++ +D+        L           I+ ++  ++
Sbjct: 277 IDTIAVIHNDKWVFMNESGISLFEAETYEDLIGKNVYDQLHPCDHDGVKQRIRNIIDRKT 336

Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449
                   + +    W    +  +          F   M    I  +  + +  + ++ +
Sbjct: 337 -------ESEIIKQSWFTFKNRLIYTEMVCIPTTFFGEMAVQVILRDISERKQTE-ELML 388

Query: 450 EVMQLCSILEATSDGIA 466
           +  +L SI    + GIA
Sbjct: 389 KSEKL-SIAGQLAAGIA 404


>gi|77460196|ref|YP_349703.1| multi-sensor hybrid histidine kinase [Pseudomonas fluorescens
           Pf0-1]
 gi|77384199|gb|ABA75712.1| multi-sensor hybrid histidine kinase [Pseudomonas fluorescens
           Pf0-1]
          Length = 1214

 Score =  306 bits (785), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 113/656 (17%), Positives = 236/656 (35%), Gaps = 44/656 (6%)

Query: 169 YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228
           +  +  F G     ++ + R+    R   +R       + +++   + +         ++
Sbjct: 320 FDSDGNFRGISA-DLLELIRLRTGLRFEIRRSRSDAEMIKQVEHHQADLIAALLPTAQRE 378

Query: 229 SPPPHLRMKNK-----VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY 283
                 R   +     ++            LK ++  +          + +F  I L + 
Sbjct: 379 ETLNFSRPYLENSYVLLTRKAADSPTHLGQLKRKRLAIAQGNPMIEYLRSEFPRIQLIET 438

Query: 284 TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY 343
                   L +  +      S        A           T +  P+            
Sbjct: 439 PDTFSAVALLDEGQVEGAVNSLVIANYFIA---------SRTFEH-PLQITTTIGTR--- 485

Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403
              +   L   +   ++      S +   P+           L   +      S+     
Sbjct: 486 --QAAFSLATARDNTELSSIIDKSLMSITPEE----------LGIINGRWRGYSSVSQGT 533

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
               +                        +  +    +  +R +  ++  + S++  T  
Sbjct: 534 WRQYQRFFYQVIGGACLLLLLSLLWNAY-MRRQIKQRKAAERALNDQLEFMGSLVNGTPH 592

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV--FLEQNTPSVMNHYLTEILSLDL 521
            I + +R+G++ S N +  + F    ED++ K                      +++   
Sbjct: 593 PIYVRDRQGLLQSCNDSYLQAFNARREDVIGKSVMQGALNNAFEAQTYQADYQRVMAEGR 652

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
              L++      ++  +    +  +              DISE ++  ++L  AK+ A+ 
Sbjct: 653 PLVLDRPLQIGNRQLTIYHWILPYRDSSGEVQGIIGGWIDISERRELLDELRAAKERADD 712

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            +  KS FLA +SHEIRTP+ A+IG  E+   +      +            S   +L +
Sbjct: 713 ANRAKSTFLATMSHEIRTPMNAVIGMLELTLKRMDQTHPD---RSGIETAYHSAKDLLGL 769

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP--RIL 698
           + D+LDI++IESG+++L  E ++L + V   + + +  A +K++ +  S +       + 
Sbjct: 770 IGDILDIARIESGRLSLTPERINLIDTVGSVVRIFEGLARQKQLSLAVSVSPPELNVDVH 829

Query: 699 ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEE---VILRVRDTGVGMTNYELE 754
            D    KQ+  N++SNAI FT +G  +I +    T + E   V L V+D+G+G+T  +  
Sbjct: 830 LDPLRFKQVLSNLISNAIKFTEAGHIRITLDVLPTDDPERSMVQLTVQDSGIGITTQDQS 889

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           +  +PF Q  N  Q    G GLGL +++ + +   GK  + S P  GT + +  P+
Sbjct: 890 RLFEPFAQAANGGQRTFSGAGLGLVISRNLCEMMGGKLRLSSLPGIGTQVSVSLPV 945


>gi|283851683|ref|ZP_06368962.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283573013|gb|EFC20994.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 838

 Score =  306 bits (785), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 90/596 (15%), Positives = 205/596 (34%), Gaps = 38/596 (6%)

Query: 231 PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG 290
                 K +  ++    A  D ++  +   +    +  L      + +  ++  +     
Sbjct: 36  TGEYVTKGRAIAMAIAAASPDALVAGDDASVQALIDEFLHIDGVGYVLVADRRGRVVAHT 95

Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLL 350
            +                       +           +   P      G +        +
Sbjct: 96  FVPA---IPAALSGQEARRGEGMAVEAVRLDGLGDYLQVSAPILAGEAGQVRVGMDKAGI 152

Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKL-SDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
               +     +    L+ +  A  +           L       +       T +     
Sbjct: 153 WRVMRGAVMQQEGLMLAMMFVALLVFYALVGSVTRPLVALAGYAVKIRDHDFTARLPATG 212

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469
           +  +  +     +   +           V      R+++  +    +I++  +DG+ +++
Sbjct: 213 NDEVGVLARAMGSMAGQLALLVSDLTRAVAD--TTRELKDSLAHTRAIIDNLADGLLVLD 270

Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL---SLDLRQTLE 526
             G     N A+  +FG    ++  +  +        ++              +      
Sbjct: 271 ARGRASLFNPALLAMFGLTEAEVAGRAASRAFPPAMAALAASAAASGRCGPVGEEGHVQA 330

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
                +           +           + + DI+  K+                  K+
Sbjct: 331 AEVRLAGGGTGKAVATRVRLAGEDREGTIILVRDITVEKEV--------------DRMKT 376

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKN-------------QRFGPLGNPRYIEYANYIDRS 633
           +F++ VSHE+RTPLT+++GF+++I+                    G  +  E  + I   
Sbjct: 377 EFISTVSHELRTPLTSVLGFAKIIRRKFADLVAPALAEADPRTWRGAQQIRENLDIIVAE 436

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693
           G  + ++V+D+LDI+K+ESG+   +   +SL E    A+      A  K +++       
Sbjct: 437 GERLTELVDDVLDIAKMESGRCEWNMAALSLAEVADHAVKAATPLAARKGLVLANQVPPT 496

Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753
           +P +L D   + Q+ LN++ NA+ FT +G ++ +        E+++ VRDTG G+   +L
Sbjct: 497 LPLVLGDRDRLVQVFLNLIGNAVKFTATG-RVDVEAAL-DGPEILVTVRDTGPGIAAGDL 554

Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           E+  + F Q  ++   + +GTGLGLP+ + +V+ + G+ +  S    G+      P
Sbjct: 555 ERIFEKFKQAGDTLTEKPKGTGLGLPICRQIVERHGGRIWAESEGGAGSAFRFTLP 610



 Score = 38.5 bits (88), Expect = 5.3,   Method: Composition-based stats.
 Identities = 33/307 (10%), Positives = 71/307 (23%), Gaps = 28/307 (9%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +DA G     +  L    G    ++ G                             G+  
Sbjct: 269 LDARGRASLFNPALLAMFGLTEAEVAGRAASRAFPPAMAALAASAAA--------SGRCG 320

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS--- 205
               EG      + LA            G  G  +    R+  + R     L +  +   
Sbjct: 321 PVGEEGHVQAAEVRLAG-----------GGTGKAVATRVRLAGEDREGTIILVRDITVEK 369

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
            +  +K    S    +              ++ K + L      + D         +   
Sbjct: 370 EVDRMKTEFISTVSHELRTPLTSVLGFAKIIRRKFADLVAPALAEADPRTWRGAQQIREN 429

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
              +  + +  T  ++         + +     +   L+     ++ A            
Sbjct: 430 LDIIVAEGERLTELVDDVLDIAKMESGRCEWNMAALSLAEVADHAVKAATPLAARKGLVL 489

Query: 326 VDKCP--IPFFVYSHGNLFYAN----PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
            ++ P  +P  +     L         + +  T    VD      G   L+         
Sbjct: 490 ANQVPPTLPLVLGDRDRLVQVFLNLIGNAVKFTATGRVDVEAALDGPEILVTVRDTGPGI 549

Query: 380 AIKPVML 386
           A   +  
Sbjct: 550 AAGDLER 556


>gi|168702167|ref|ZP_02734444.1| multi-sensor signal transduction histidine kinase [Gemmata
            obscuriglobus UQM 2246]
          Length = 1076

 Score =  306 bits (785), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 116/762 (15%), Positives = 242/762 (31%), Gaps = 66/762 (8%)

Query: 87   WNIDA-HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            W  D   G   E S+E    +   A   I M L  +  +++ D    + +          
Sbjct: 328  WTWDEVAGR-VEWSDEAAAVLDLPAPT-IPMPLDSLMGLIYPDDRGTVLEQFAAVRAGAD 385

Query: 146  KTTL-WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            +      +   +    I   A  +          R  G+V             +  +   
Sbjct: 386  RFATDLRVTTADGVAWIHCQARAVRETGGRL--ARLDGLVQDITERMRAAGALRDRESLL 443

Query: 205  SHLHEIKKGHSSVEKEKYDIFSQQSPPP-----------HLRMKNKVSSLTEYYAHKDDV 253
            S +    +    V  ++Y+                      R+ + +S+         D 
Sbjct: 444  SIVTSAARVGLVVVNDRYEYLFANDTYAAVLGIPPDQIVGRRVPDLLSASWPQIKPHLDR 503

Query: 254  LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
                ++     E   LP    + T+ +    + +               +          
Sbjct: 504  ALAGEHVSYDLEREPLPGGAGWRTLRVMYEPRPK-----DGRQTAVVVVIDQTEQKQAET 558

Query: 314  YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
               E E      V   P   ++ + G++ + NP+ + L    + + +         L  P
Sbjct: 559  AIRESEKRFRTLVSALPDAVYINAGGHVAFCNPACVRLFGASAPEALIGKTPFD--LMHP 616

Query: 374  KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
               +    +   +  +             ++++      M                   +
Sbjct: 617  DDHETIRQRIAAIS-ASGASNPG-IEERIVRFDGTPVPVMVTAIAITDRGE---RAFLVV 671

Query: 434  EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR-----EGIILSTNRAVSKLFGYP 488
              +  + +  ++++  + + L    E    G    +      +   +  N          
Sbjct: 672  LRDLSEQKRAEQQLHYQELLLREAAELAHVGGWWFDPVTLEGDWTPVVAN---IHDLPPD 728

Query: 489  VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
                       F  +     +   +            +      +       +R I + +
Sbjct: 729  APPPKPDRGIEFYVEEDRPRIAQAVRAATESGTP--YDLELQLVSARGAFKWVRTIARPI 786

Query: 549  PFSSCYSLT---MHDISEWKQEKNKLSHAKK-----------IAEKESSHKSDFLARVSH 594
                        + DI++ K+ + ++ H                E  ++    F   VSH
Sbjct: 787  VEEGRVIRVRGSLQDITDRKRAEAEIRHLNADLEQRVRDRTIELEAANAELEAFSYSVSH 846

Query: 595  EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
            ++R PL AI GFS+++ N+ +GP       EY   +  +   +  +V+DLL  S++  G+
Sbjct: 847  DLRAPLRAIDGFSQIVLNE-YGPQLPADAREYLTDVCANTLRMGRLVDDLLTFSRL--GR 903

Query: 655  MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714
              +  +PV+  E V+  +  +      +RI IR++    +P   AD   ++Q+ LN+L+N
Sbjct: 904  QPVRRQPVNTSELVAGCLDELLRQTGARRIEIRSN---ELPPCDADPALLRQVWLNLLAN 960

Query: 715  AIHFTPSGGQ--IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
            A+ ++       I +  T + +  V   VRD GVG       K    F ++   +    E
Sbjct: 961  ALKYSSLSSLALIEVGATASPDGPVYF-VRDNGVGFDMRYAHKLFGVFQRLH--RAEDYE 1017

Query: 773  GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF--PLYD 812
            GTG+GL L + +V  + G+ +  S P KG         PL D
Sbjct: 1018 GTGIGLALVQRIVHRHGGRVWADSEPGKGATFSFTLGRPLPD 1059



 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 53/521 (10%), Positives = 129/521 (24%), Gaps = 28/521 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI-DPNNHIGDLLKRQNTWY 144
            +  D  G    ++E   +  G    +++G     + D        +H   ++       
Sbjct: 71  VFVKDRDGRYLLLNESAARFAGRPVAELLGRDDTALFDPASARMVRDHDRRVMAANRAET 130

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            +  L     T  ++       P  + + E  G    GI        D     +    +F
Sbjct: 131 TEEELTTAGVTRTFL---ATKAPYRNEHGEVIGL--VGISRDITDRKDAERELRAERDRF 185

Query: 205 SHLHEIKKGHS---SVEKEKYDIFSQQSP-------PPHLRMKNKVSSLTEYYAHKDDVL 254
               E          +  +    F   SP            +    + +       D   
Sbjct: 186 QKFVEAVPLVLCSFRLSPDGTTSFVYSSPRIEDIYGIGPAALARDAAPIFGLIHPDDRDR 245

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES---FEYLSHRNHPSL 311
                            +        ++          +     +               
Sbjct: 246 VRSGIEESARGLFQWRAEFRVRPPGRDELWIDGRSAPEREADGSTVWHGYIADITPRKRT 305

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
                   +   E +    +  + +    G + +++ +  +L     +    I   L +L
Sbjct: 306 EHALQTTRDQLREALRVARLGSWTWDEVAGRVEWSDEAAAVL----DLPAPTIPMPLDSL 361

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
           +      D   +               +  L     +      +                
Sbjct: 362 MGLIYPDDRGTVLEQFAAVRAGADR-FATDLRVTTADG--VAWIHCQARAVRETGGRLAR 418

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
            +G+  +  +       +      L  +  A   G+ ++N     L  N   + + G P 
Sbjct: 419 LDGLVQDITERMRAAGALRDRESLLSIVTSAARVGLVVVNDRYEYLFANDTYAAVLGIPP 478

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
           + I+ +     L  + P +  H    +    +   LE+  L      + L +    +   
Sbjct: 479 DQIVGRRVPDLLSASWPQIKPHLDRALAGEHVSYDLEREPLPGGAGWRTLRVMYEPRPKD 538

Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
                 + + D +E KQ +  +  ++K      S   D + 
Sbjct: 539 GRQTAVVVVIDQTEQKQAETAIRESEKRFRTLVSALPDAVY 579



 Score = 76.2 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 60/148 (40%), Gaps = 6/148 (4%)

Query: 442 INKRKMEI---EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
           + +R++E        L ++ + T+D + + +R+G  L  N + ++  G PV ++L +  T
Sbjct: 45  LARRELETFAGAGALLRAVADGTTDAVFVKDRDGRYLLLNESAARFAGRPVAELLGRDDT 104

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSL 556
              +  +  ++  +   +++ +  +T E+  L +    +         +           
Sbjct: 105 ALFDPASARMVRDHDRRVMAANRAETTEE-ELTTAGVTRTFLATKAPYRNEHGEVIGLVG 163

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSH 584
              DI++ K  + +L   +   +K    
Sbjct: 164 ISRDITDRKDAERELRAERDRFQKFVEA 191



 Score = 68.1 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 47/430 (10%), Positives = 105/430 (24%), Gaps = 21/430 (4%)

Query: 33  GFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAH 92
           G+ T +   E    D  + +     +Q           E+   F  +   +     I+A 
Sbjct: 524 GWRTLRVMYEPRPKDGRQTAVVVVIDQTEQKQAETAIRESEKRFRTLVSALPDAVYINAG 583

Query: 93  GYLKEISEELPKTIGNYAFK-MIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151
           G++   +    +  G  A + +IG    D+      +        +              
Sbjct: 584 GHVAFCNPACVRLFGASAPEALIGKTPFDLMHPDDHETIRQRIAAISASGASNPGIEERI 643

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIV-HVNRVDNDPRALGKRLDKKFSHLHEI 210
           +      VP+ + A+ I  R     G R F +V                 +       E+
Sbjct: 644 VRFDGTPVPVMVTAIAITDR-----GERAFLVVLRDLSEQKRAEQQLHYQELLLREAAEL 698

Query: 211 K------KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
                      ++E +   + +     P      K     E+Y  +D     +     T 
Sbjct: 699 AHVGGWWFDPVTLEGDWTPVVANIHDLPPDAPPPKPDRGIEFYVEEDRPRIAQAVRAATE 758

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
             +    +    +        +     +                 +     +        
Sbjct: 759 SGTPYDLELQLVSARGAFKWVRTIARPIVEE-GRVIRVRGSLQDITDRKRAEAEIRHLNA 817

Query: 325 TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
            +++            L  AN        Y    D+              L++     P 
Sbjct: 818 DLEQR----VRDRTIELEAANAELEA-FSYSVSHDLRAPLRAIDGFSQIVLNEYGPQLPA 872

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
                     A + R+  +  +      +   P     Q            +++  +   
Sbjct: 873 DAREYLTDVCANTLRMGRLVDDLLTFSRLGRQPV--RRQPVNTSELVAGCLDELLRQTGA 930

Query: 445 RKMEIEVMQL 454
           R++EI   +L
Sbjct: 931 RRIEIRSNEL 940


>gi|146340985|ref|YP_001206033.1| sensor histidine kinase [Bradyrhizobium sp. ORS278]
 gi|146193791|emb|CAL77808.1| putative sensor histidine kinase with PAS/PAC and response
           regulator receiver domains [Bradyrhizobium sp. ORS278]
          Length = 771

 Score =  306 bits (785), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 84/410 (20%), Positives = 164/410 (40%), Gaps = 21/410 (5%)

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469
            L +    +            N           ++R+ E   + L    E  +  +   +
Sbjct: 201 VLVVFLCLYTSFMVRHLVAHGNVFLDNLKAQIRHERQNETISLLLKEFQENAASWLWQTD 260

Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPF---TVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
            EG ++   +  + +   P++ +  +       +L     + +      +        + 
Sbjct: 261 AEGRLIDAPQRFADVAQLPLDQLKGERLIDTLKYLCPTDTATLKTLADRMAQRLSIPEIL 320

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
              + +  E +  +L     +      + Y     D++E  + +         AE ES  
Sbjct: 321 IHVVVAGGERRRWALTARPARDHEGKFAGYRGFGRDVTERWRAEQ--------AEAESRA 372

Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
           KSDFLA +SHEIRTP+  ++G +  +   +     +         I  SG+ +  I+ND+
Sbjct: 373 KSDFLAMMSHEIRTPMNGVLGLASTLLETKL----DDEQRHAVMTIRESGDNLQRILNDI 428

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRS 703
           LD+SK+ +GK+       S    V    +++ + A  K +L+       +P  +  D+  
Sbjct: 429 LDLSKLNAGKLEFETVDFSPSALVEAVTAIIGVNAKSKSLLVNADIDPKLPPSLKGDVAR 488

Query: 704 VKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMTNYELEKAMKPF 760
           ++Q+ +N+ SNA+ FT  GG  I +S     + +  +  RV DTG+G+    + K    F
Sbjct: 489 IRQVLINLASNAVKFTERGGVTIAVSCRTRDDHKATIEWRVSDTGIGIPADRVGKLFTDF 548

Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            Q   S   R  GTGLGL +++ +++   G   + S   +G+       L
Sbjct: 549 AQADASINRRFGGTGLGLAISRRIIEQMGGAIAVSSVQGEGSTFRFSLTL 598



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 44/380 (11%), Positives = 94/380 (24%), Gaps = 13/380 (3%)

Query: 82  TVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD---ILHIDPNNHIGDLLK 138
              + W  DA G L +  +           ++ G RL D               + D + 
Sbjct: 252 AASWLWQTDAEGRLIDAPQRFADVAQLPLDQLKGERLIDTLKYLCPTDTATLKTLADRMA 311

Query: 139 RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
           ++ +         + G        L A P      +F+G+RGFG                
Sbjct: 312 QRLSIPEILIHVVVAGGERRRW-ALTARPARDHEGKFAGYRGFG--RDVTERWRAEQAEA 368

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
               K   L  +      +      +    S     ++ ++            D L+   
Sbjct: 369 ESRAKSDFLAMMS---HEIRTPMNGVLGLASTLLETKLDDEQRHAVMTIRESGDNLQRIL 425

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
             +L   + +  + E            +     +  N+K     ++    P L       
Sbjct: 426 NDILDLSKLNAGKLEFETVDFSPSALVEAVTAIIGVNAKSKSLLVNADIDPKLPPSLKGD 485

Query: 319 ENLTPETVDKCPI-PF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAG-GLSTLLDAPKL 375
                + +         F    G     +       K      +   G G+         
Sbjct: 486 VARIRQVLINLASNAVKFTERGGVTIAVSCRTRDDHKATIEWRVSDTGIGIPADRVGKLF 545

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG-IE 434
           +D       +  R   T +  +     I+         +        +F   +P +    
Sbjct: 546 TDFAQADASINRRFGGTGLGLAISRRIIEQMGGAIAVSSVQGEGSTFRFSLTLPWSDKQI 605

Query: 435 PEDVDTRINKRKMEIEVMQL 454
            +    R+    ++  +  L
Sbjct: 606 SDQRGDRVGAGDLKARIEAL 625


>gi|330814970|ref|YP_004358675.1| Hpt sensor hybrid histidine kinase [Burkholderia gladioli BSR3]
 gi|327367363|gb|AEA58719.1| Hpt sensor hybrid histidine kinase [Burkholderia gladioli BSR3]
          Length = 1125

 Score =  306 bits (785), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 121/638 (18%), Positives = 218/638 (34%), Gaps = 38/638 (5%)

Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD 252
             A  +R     + +       S V                + +    S         D 
Sbjct: 126 SDATLQRAFSFSTQIGRASAATSRVLARPPTQIIFNVSRTVVAIVPATSVEHPEQLATDA 185

Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL---QNNSKESFEYLSHRNHP 309
              T    L     S   +          +         L   +   + +   L H    
Sbjct: 186 GRATFVRELTEGAGSLAFDAPSHLLALAPKAWWVPRLYPLPNGRKVLQLASPVLFHGQVK 245

Query: 310 SLSAYFDEGENLTPETVDKCPIPFF--VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
           ++     +  +L     D      F  V S G +       L   ++      +     S
Sbjct: 246 AVLVNEVDPADLLWPIADGAHDGSFAIVGSDGRIV-----ALSAGEHAEPQTADAISRWS 300

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
            +                            + ++T  W        +      A      
Sbjct: 301 RIRHTSGERLAEYRGDGRFVLGTPLGDTGFSLVYTYSWRDVVRAIASKALTATAIALAGF 360

Query: 428 MPQNGIEPEDVDTRINKRKMEIEV----MQL-CSILEATSDGIAIINREGIILSTNRAVS 482
                +  +             E      +L  +++E    GI +++          +  
Sbjct: 361 AFVWLLLSQLNRRVFQPMYARSEQVFDSERLSRTMIETVPVGIGLVSTG--------SGE 412

Query: 483 KLFGYPVEDILRKPFTVFLE--QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
            L+G      L +     +    +    ++  L         +  ++  L  T++ K L+
Sbjct: 413 LLYGGSSLVALAELVEGGMPRLIDELKQLHARLASAKHDSHDEVFQEDVLLRTRDGKDLA 472

Query: 541 L--RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
           L  R  + +            D++  +  +++L HAK  A++ ++ KS FLA +SHEIRT
Sbjct: 473 LQARFALGRYLGKDVLVTAFVDMTASQALQHQLRHAKLAADQANAAKSAFLAAMSHEIRT 532

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
           PL AI+G  E++ +    PL      +  + I  S N +L I+ D+LD SKIE+G+M L 
Sbjct: 533 PLNAILGNLELLGHSALNPL----QRDRLDTIRASSNGLLAIIQDVLDFSKIEAGEMRLE 588

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIH 717
                L + ++ ++++    A+ KRI +   F   I   +  D   + Q+  N+LSNAI 
Sbjct: 589 HMHFRLVDTITRSLAMFAPAAHLKRIALVGQFRAAIDQPMRGDPGRLAQVVNNLLSNAIK 648

Query: 718 FTPSGGQIIISTTHTS-----NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           FT  G ++ +S             +++ V DTG+G+    L      F Q  +S   R  
Sbjct: 649 FTGQG-RVTLSLDVERLPCARGGMLVIEVADTGIGIEAAHLSTLFNAFMQADSSISRRFG 707

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           GTGLGL L + +V    G   + S P +G+   +  PL
Sbjct: 708 GTGLGLALCQRLVTQMGGTIDVQSEPGQGSRFTVRMPL 745


>gi|324327542|gb|ADY22802.1| sporulation kinase A [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 510

 Score =  306 bits (785), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 104/535 (19%), Positives = 201/535 (37%), Gaps = 42/535 (7%)

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTK 353
           +S +   + +                +     +  P     +   G + + NPS      
Sbjct: 7   SSTQRKRHPNISRRLRNHIQDRSLTEMYASLFEHNPDGIISLNLEGIIIHTNPSAERTLG 66

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
           Y S + +E     S L       + +  + V+    +         + +I       L +
Sbjct: 67  YTSSE-LERKSITSIL-------EAHISEQVLQNIKNTKADNQHEYILSIYHKNGFLLDV 118

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
                    Q         ++P +   RI ++K++    +L +++ +    +   + EG 
Sbjct: 119 VTKLVPIFVQNRLTGVYAIMKPLEKSERI-EKKLKESEKRLRTLVNSMPAFVIFKDHEGR 177

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN----HYLTEILSLDLRQTLEKIT 529
            L  N      F +       K  +  ++ N            + E+     RQ L    
Sbjct: 178 WLEANDYALSCFNFHHVPYHGKKDSELIQYNEAYREAFLHCEEVDELAWQ-QRQILHGEE 236

Query: 530 LGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
               +++  L L I    L           +   DI+E K+ +  L  ++K+A       
Sbjct: 237 FIIHRDDFDLILSISKVPLYHPDGSRKGLIVMGRDITELKETEKLLRKSEKLAVV----- 291

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
               A ++HEIR PLT++ GF  ++      P  N     Y + +    + +  I +  +
Sbjct: 292 GQLTAGIAHEIRNPLTSLKGFLTLLL-----PEINEEQKWYIDVMLSEISQMESITSQFM 346

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
            +SK +     L  +  ++   + E ++ +   A    + I     + +  I  D   +K
Sbjct: 347 AMSKPQ----VLAIQTCNIQTLIEEVVTFILPTAIMHSVHIIMDHLDYVYDIQCDGNQLK 402

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           Q+ +NIL NAI   P+GG I I T       +++R+ D G G+    + +  +PF     
Sbjct: 403 QVFINILKNAIEAMPNGGNIFIQTKPLEGNFILIRIIDEGCGIPEDRISRLGEPFY---- 458

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820
              ++ +GTGLGL +   +++ + GK +I S   KGT+++I  PL   S PH  I
Sbjct: 459 --SLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTVVDIHLPL---SSPHLAI 508


>gi|251790598|ref|YP_003005319.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Dickeya zeae Ech1591]
 gi|247539219|gb|ACT07840.1| histidine kinase [Dickeya zeae Ech1591]
          Length = 955

 Score =  306 bits (785), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 93/382 (24%), Positives = 158/382 (41%), Gaps = 28/382 (7%)

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKP 496
           +    N  ++E        I+ +   GI I+   +G  + +N            +   + 
Sbjct: 345 LPAERNAFQLEENEQFNRKIVASAPVGICILRISDGTNILSNELAHNYLSLLTYEDRVRI 404

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556
               +     S     +                   T     L +  +  +    +    
Sbjct: 405 VR--IICEQQSKSLDVV-------------------TGRNHHLQISFVHSRYRNENVAIC 443

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            + D+S   + +  L      AE+ S  KS FLA VSHE+RTPL  IIG  ++++ +   
Sbjct: 444 VLLDVSARVRMEESLQEMANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKSLP 503

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
              N         +  S  L+L I++D+LD SKIES ++ +     +  E ++  ++   
Sbjct: 504 SDAN----RLVTAMQNSSALLLKIISDILDFSKIESEQLKIEPSEFAPREVINHILNNYL 559

Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
               +KR+ +      N+P R++ D   ++Q+  N+LSNAI FT +G  I+     +   
Sbjct: 560 PLVVKKRLELYCYIDPNVPSRLMGDAVRLQQVLSNLLSNAIKFTDTG-CIVFQVACSDEG 618

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            ++ +VRDTGVG+    + K   PF Q     Q   +GTGLGL + + +V    G   I 
Sbjct: 619 YLVFKVRDTGVGIDTRSVMKLFDPFFQAGTGVQRHFQGTGLGLAICEKLVSLMDGDITIE 678

Query: 796 STPAKGTLIEIIFPLYDTSHPH 817
           S P  G+   I  PLY   +P 
Sbjct: 679 SEPGLGSEFGIRIPLYRAHYPQ 700


>gi|254442171|ref|ZP_05055647.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
 gi|198256479|gb|EDY80787.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
          Length = 1467

 Score =  306 bits (785), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 102/650 (15%), Positives = 214/650 (32%), Gaps = 41/650 (6%)

Query: 189  VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ-QSPPPHLRMKNKVSSLTEYY 247
                     +  +++   L +      ++        S  Q      +    +     Y 
Sbjct: 681  ERALTEETLRESEERARLLLDNAPAAIAIFDRDMLYLSVSQRWMDDNKHTESLIGKHHYE 740

Query: 248  AHKDDVLKTEKYPLLTSEESSLPEQ-EDFHTINLNQYTKKQYFGTLQNNSKESFEYL--- 303
              +      +     + +  ++    + F   N      K       N   E    +   
Sbjct: 741  VVQYMPDHWKAAHRRSLKGETVKANKDLFVDDNEQVRWIKWETRPWLNGDGEIGGIVLMT 800

Query: 304  -SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIE 361
                +        +E E      ++  P    V+        A+  +L    +    D+ 
Sbjct: 801  EEITDRVKAENLLEESERRAKLYLENAPAGIAVFDTKMRYLAASRRWLNDYGFDRDQDVI 860

Query: 362  IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                   L            K +         I+              S  + ++     
Sbjct: 861  GKSHY-HLFPEI----PERWKDIHRRTLAGEIISDDKDEFI--RADGTSQWIKWVCMPWT 913

Query: 422  NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
                +      +  +  D  + ++      ++  S  E  + GIA ++ EG  L  N+ +
Sbjct: 914  ENDSQIGGLAIMAEDITDNVVAEKLQLESDLRFRSTFENAAVGIAHLSPEGNWLRVNQKI 973

Query: 482  SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
              +  Y  E++L   F      +          ++L  D+            ++     +
Sbjct: 974  CDMVDYSKEELLSMTFGDITHPDDLEADWDLARKVLVGDI-SNYSIDKRYIRRDGSTTWV 1032

Query: 542  RIIIKKLPFSSC----YSLTMHDISEWKQEK-------NKLSHAKKIAEKESSHKSDFLA 590
             + +            +     DI+  K+ +        +L  AK  AEK +  K +FL+
Sbjct: 1033 SLTVSLQLSDDGSPDYFISITRDINAQKRAEDALLQREEELISAKNAAEKANRAKDEFLS 1092

Query: 591  RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650
             +SHE+RTPL  IIGF++++  +           E +++   S   +L +V+ LLD + +
Sbjct: 1093 VMSHELRTPLNPIIGFAQLLAQRS----DEAFVKEASSFTLSSAQRMLSLVDSLLDFANL 1148

Query: 651  ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN--NIPR---ILADLRSVK 705
            +    N   E  SL+E ++E  +L +       + IR        IP    +   L  ++
Sbjct: 1149 DRTNANFPLESFSLEELLAEVKALRETIEYPCSLQIRNGCDPLSGIPENAKLCGPLEPIR 1208

Query: 706  QIALNILSNAIHFTPSGGQIIISTTHT-----SNEEVILRVRDTGVGMTNYELEKAMKPF 760
            ++  +++ NA  +    G +II+ ++        E + + V D G G+    + +   PF
Sbjct: 1209 KVLSHLVGNAFKYAGDSG-VIITLSYKQRTDPPEEYLQIEVSDLGPGVPPEYVPELFTPF 1267

Query: 761  GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             Q  +S   R  G GLGL +++ +V    G         +G +     P+
Sbjct: 1268 NQADSSHTRRHGGLGLGLAISEKLVQQMNGSIKFRPNLPQGAVFTFSVPV 1317



 Score =  134 bits (336), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 68/562 (12%), Positives = 152/562 (27%), Gaps = 75/562 (13%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN-HIGDLLKRQNT-WYG 145
            +D+   L  +++   +  G    +++     ++      + +   I   +         
Sbjct: 418 QLDSKWRLLRVNDRYCEMTGYSRSELLDTSPSNLDHPDDKESDRKAIARFINGSEPIHKH 477

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR---ALGKRLDK 202
           +      +G+ ++V + ++  PIY       G  G GIV     +       A   RL  
Sbjct: 478 EKRYIRKDGSVIWVKVTVS--PIYDERGAIIG--GAGIVQDISENKQIEQNHAFLDRLHA 533

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKN--KVSSLTEYYAHKDDVLKTEKYP 260
           +    +  +K      K              +   +   +    E+  H+  +L   K  
Sbjct: 534 ELMKPNSPQKLKEFTLKALVKHLDVDGANFGIFTSDAQYLIVQQEFQDHRPSILGRHKIS 593

Query: 261 LLTSEES--------------------SLPEQEDFHTINLNQY----------------- 283
              ++                      S    E F+ I +  Y                 
Sbjct: 594 DFGAQADSEKMLAGQEIQVDDVNQKGLSRDVIERFNKIGVAAYLTEPLVIVKEAKSLITV 653

Query: 284 ----TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG 339
                +K      Q   +                   E E      +D  P    ++   
Sbjct: 654 TSSSPRKWKPHETQLLREVCSRLFPAIERALTEETLRESEERARLLLDNAPAAIAIFDRD 713

Query: 340 NL-FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398
            L    +  ++   K+      E   G         + D+   K           + A+ 
Sbjct: 714 MLYLSVSQRWMDDNKHT-----ESLIGKHHYEVVQYMPDH--WKAAHRRSLKGETVKANK 766

Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458
            L     + E    + +      N   E      +  E  D    +  +E    +    L
Sbjct: 767 DLFVD--DNEQVRWIKWETRPWLNGDGEIGGIVLMTEEITDRVKAENLLEESERRAKLYL 824

Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYPVE-DILRKPFTVFLEQNTPSVMNHYLTEIL 517
           E    GIA+ + +   L+ +R     +G+  + D++ K          P          L
Sbjct: 825 ENAPAGIAVFDTKMRYLAASRRWLNDYGFDRDQDVIGKSHYHLF-PEIPERWKDIHRRTL 883

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAK 575
           + ++    +   + +    + +    +      S     ++   DI++    +      K
Sbjct: 884 AGEIISDDKDEFIRADGTSQWIKWVCMPWTENDSQIGGLAIMAEDITDNVVAE------K 937

Query: 576 KIAEKESSHKSDF---LARVSH 594
              E +   +S F      ++H
Sbjct: 938 LQLESDLRFRSTFENAAVGIAH 959



 Score = 94.3 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 18/188 (9%), Positives = 59/188 (31%), Gaps = 6/188 (3%)

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459
           L        +++ +        NQ  + +   G+  +     +   +      Q  +  +
Sbjct: 352 LVRYHHKNGSTIWIRCHGLAIRNQDGKPIRMLGVHNDVTAAILTAGE-RASDQQFHAFFQ 410

Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL 519
            ++ G   ++ +  +L  N    ++ GY   ++L    +     +        +   +  
Sbjct: 411 GSAIGAIQLDSKWRLLRVNDRYCEMTGYSRSELLDTSPSNLDHPDDKESDRKAIARFI-N 469

Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS----LTMHDISEWKQEKNKLSHAK 575
                 +       K+  ++ +++ +  +             + DISE KQ +   +   
Sbjct: 470 GSEPIHKHEKRYIRKDGSVIWVKVTVSPIYDERGAIIGGAGIVQDISENKQIEQNHAFLD 529

Query: 576 KIAEKESS 583
           ++  +   
Sbjct: 530 RLHAELMK 537



 Score = 65.8 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 18/173 (10%), Positives = 56/173 (32%), Gaps = 10/173 (5%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNT--WYGK 146
            +   G    +++++   +     +++ M   D++    ++ +  +   +   +   +   
Sbjct: 960  LSPEGNWLRVNQKICDMVDYSKEELLSMTFGDITHPDDLEADWDLARKVLVGDISNYSID 1019

Query: 147  TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                  +G+  +V + ++     S +     F     + + R  N  +     L ++   
Sbjct: 1020 KRYIRRDGSTTWVSLTVSLQ--LSDDGSPDYF-----ISITRDINAQKRAEDALLQREEE 1072

Query: 207  LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
            L   K       + K +  S  S        N +    +  A + D    ++ 
Sbjct: 1073 LISAKNAAEKANRAKDEFLSVMSHE-LRTPLNPIIGFAQLLAQRSDEAFVKEA 1124


>gi|303248386|ref|ZP_07334646.1| integral membrane sensor hybrid histidine kinase [Desulfovibrio
           fructosovorans JJ]
 gi|302490184|gb|EFL50102.1| integral membrane sensor hybrid histidine kinase [Desulfovibrio
           fructosovorans JJ]
          Length = 651

 Score =  306 bits (785), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 86/393 (21%), Positives = 168/393 (42%), Gaps = 22/393 (5%)

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIIN------REGIILSTNRAVSKLFGYPVEDI 492
           + +   +++E    +L       ++ +A          +G  LST+    +++G      
Sbjct: 116 ELKEKTKELEESKERLQR-----AELVAETGNWEVALSDGT-LSTSEGARRIYGMDPNRH 169

Query: 493 LR-KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
              +            +++  LT+++   +   +        ++  ++ +          
Sbjct: 170 YTLREVQHIPLPQYRPMLDAALTDLVGRRIPYNVTFKIR-RPQDGAVIDINSRASYDSTD 228

Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
           +    T+ D++  KQ +  L  +++ AE  +S K++FLA +SHEIRTPL  I+G  + ++
Sbjct: 229 NKIFGTIQDVTAQKQIEADLIESRQRAELANSAKTEFLANMSHEIRTPLNGILGMLQALE 288

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
           +       +     +     R+   +  ++ND+LD+S+IE+GK+ +   P  L E V+  
Sbjct: 289 DTA----PSAEQQRFIGAAIRASRRLAQLLNDILDLSRIEAGKIRITPGPFKLSELVASI 344

Query: 672 ISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQ-IIIST 729
             L    A +K + +  S A+ IP  +L D   ++QI  N++ NAI FT  G   + I  
Sbjct: 345 EELFSYSARKKGLSLSFSVASGIPNDLLGDAVRIRQILFNLIGNAIKFTNQGSVSLTIEP 404

Query: 730 THTSNEEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
                + +     V DTG+G+    +    +PF Q         +G GLGL + K +   
Sbjct: 405 IRVEEQRIRLLFTVADTGIGIPETLMAHICEPFTQARPDTLPPTQGVGLGLSIVKKLTRL 464

Query: 788 NMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820
             G+  + S    GT + +  PL     P   +
Sbjct: 465 MNGEVTLESREGHGTTVSLSLPLELPQQPETAV 497


>gi|266622772|ref|ZP_06115707.1| putative response regulator receiver domain protein [Clostridium
           hathewayi DSM 13479]
 gi|288865477|gb|EFC97775.1| putative response regulator receiver domain protein [Clostridium
           hathewayi DSM 13479]
          Length = 1116

 Score =  306 bits (785), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 113/535 (21%), Positives = 204/535 (38%), Gaps = 40/535 (7%)

Query: 315 FDEGENLTPETVDKCPIPFFVYSHG---NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
                       +  P    + S      L   N   + L        ++        L 
Sbjct: 315 LRSQAGYIAHLYNAIPEGIALMSVEAPYRLLQLNREGMRLLH------VQEENSNGKQLI 368

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
                D+  +   +   +       S     ++ +       +    EK           
Sbjct: 369 DFVHPDDYPMVADIFRAAAGDDRKHSFENRVVREDGS--FFWSGGLVEKTLNEDGTPILI 426

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA-------IINREGIILSTNRAV-SK 483
               +    ++ + + E E +Q   +L +    +        + +     +     + ++
Sbjct: 427 ATFHDITMEKLAEEEAEREKLQERRMLISAISNVFPVIISLNLTSDTLNFIYLQPGLLAE 486

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYL------TEILSLDLRQTLEKITLGSTKEEK 537
           + G      L + F   +  +      + L        + S      LE   L +  +  
Sbjct: 487 MGGQESFSRLYQDFMEAVHPDFQEDFRNRLSPENLKKTLGSSRQEVFLEARILLTDGQYH 546

Query: 538 LLSLRIIIKKLPFSSCYSLTM--HDISEWKQEKNK----LSHAKKIAEKESSHKSDFLAR 591
             S +II  + P+S      +    I E K E+ +    L  A + A+  S  KS FL+ 
Sbjct: 547 WTSTQIIYVENPYSGDQLAILLSRRIDEQKHEEEQHRQALQSALESAKAASVAKSRFLSN 606

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           +SH+IRTP+ AI+G + +  +         R  E    I+ S + +L ++ND+LD+SKIE
Sbjct: 607 MSHDIRTPMNAIMGMTAIAASHMD---DQERVRECLRKINLSSSHLLSLINDILDMSKIE 663

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF-ANNIPRILADLRSVKQIALN 710
           SGK++L  EP +  E V+E   L++  A+   + +  S        +  D   V+QI  N
Sbjct: 664 SGKISLRDEPFNFAELVAEVAELIRPQADAGHLDMNLSLMDLKDELVAGDPLRVRQICFN 723

Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEE-----VILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           +LSNA+ +TP GG I +      +        I    DTG+GM+   L+K   PF ++ +
Sbjct: 724 VLSNAVKYTPEGGHISVRLYQRDSGRREYQNFIFECSDTGLGMSPEFLDKLFLPFERVQD 783

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820
           S   R  GTGLG+ + K +VD   G   + S   +G+   +  PL   + P + +
Sbjct: 784 STHSRVTGTGLGMAITKNIVDMMGGDIQVESELGEGSAFTVTLPLRLQNVPPEEV 838


>gi|167576610|ref|ZP_02369484.1| two-component system sensor protein [Burkholderia thailandensis
           TXDOH]
          Length = 926

 Score =  306 bits (785), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 125/672 (18%), Positives = 232/672 (34%), Gaps = 49/672 (7%)

Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH 233
           +F   +G+ ++H  +      A+G     +          + ++ + +  +   QSP P 
Sbjct: 24  QFDTHQGYAVLHTPQGAPAALAVGITAPGRS---ASTFAPYLALLETQLLMGDGQSPLPD 80

Query: 234 LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293
            R++    S    Y       + +         S+                 +     + 
Sbjct: 81  DRVEGYSFSPDGTYLSLLWSREDQAPEAFIESHSASG---VIGDAMRGIRYLRDASTIIP 137

Query: 294 NNSKESFEYLSHRNHP--------SLSAYFDEGENLTPETVDKCPIPFFVYS------HG 339
             +     +L     P         +    D    L    V   P+  F          G
Sbjct: 138 LRADRRTVWLPPHPDPLTGKPMIRIVQPAIDAAGKLFAIYVRSLPLDMFYSDLNNTPAGG 197

Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLSTL----LDAPKLSDNNAIKPVMLYRSDRTCIA 395
            L   +     +    +    +     S L    L           +  M   SD+    
Sbjct: 198 TLTIVDRKGRAIIGSSNPPGRDGGVTDSALSIRSLGDGFDGLVERHENGMFVTSDQLPGT 257

Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR------INKRKMEI 449
               +H   W    + A+              +    +     D +         +++  
Sbjct: 258 DWVLVHAYSWK-TIAAALALRFSLVTGFAAGIIVMLWVVAVQFDRKGLIPNYRRAQRLLE 316

Query: 450 EVMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
             +   +IL     G+ +++  +G +L  N A+ +L      + L         Q T   
Sbjct: 317 SEVLNRTILRTAPVGLGLLSAQDGSVLLQNNAMLELSARTSGEPLPNRLWDAYRQTTGRS 376

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568
            +               +            L   ++  +   ++    T+ DIS  K+ +
Sbjct: 377 NDE-------DGALLLHDLAIEREDSNPIYLQANVVAARYRGANVLLCTLLDISMRKESE 429

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
            KL  A+  +++ +  KS FLA +SHEIRTPL AIIG  E+++  +     + R      
Sbjct: 430 LKLKEARIASDQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSQLSNQQSER----LQ 485

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            ++   N +L I+ND+LD+SK+ESG+M L   P  +   + E +      A  K + + +
Sbjct: 486 VVESCSNALLHIINDILDLSKVESGQMTLENIPFDIQALLQEIVDAYAPLAESKGLQLLS 545

Query: 689 SFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIST----THTSNEEVILRVRD 743
           +    + R    D   ++QI  N++ NAI FT  G  I +          +  + + V D
Sbjct: 546 NLGEGVARYYSGDPARIRQILSNLIGNAIKFTERG-HISVDVHQAKAAQGDSAIEIWVND 604

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TG+G+    +      + Q   S   R  G+GLGLPL K +     G   + S P  GT 
Sbjct: 605 TGIGIRPDRIATLFDVYTQADTSIHRRFGGSGLGLPLCKRLATIMGGSIEVDSLPDFGTT 664

Query: 804 IEIIFPLYDTSH 815
           + ++ PL +  H
Sbjct: 665 VTVVLPLREARH 676


>gi|162418891|ref|YP_001605672.1| aerobic respiration control sensor protein ArcB [Yersinia pestis
           Angola]
 gi|162351706|gb|ABX85654.1| putative aerobic respiration control sensor protein ArcB [Yersinia
           pestis Angola]
          Length = 778

 Score =  306 bits (785), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 78/374 (20%), Positives = 161/374 (43%), Gaps = 16/374 (4%)

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
                + ++  +   L S L+A+ D +   N +      NRA+  L G   + ++     
Sbjct: 142 HREQAQIELGQQSALLRSFLDASPDLVYYRNEDNEFSGCNRAMELLTGKSEKQLVGLTPK 201

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII--KKLPFSSCYSL 556
                +    +     ++   ++  T E+  +     +    LR +    ++        
Sbjct: 202 DVYAPDIAEKVMETDEKVFRHNVSLTYEQWLVYPDGRKACFELRKVPFYDRVGKRHGLMG 261

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
              DI+E K+ ++ L +        S  K+ F++ +SHE+RTPL  I+G S ++ +    
Sbjct: 262 FGRDITERKRYQDALEN-------ASRDKTTFISTISHELRTPLNGIVGLSRILLDTEL- 313

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
              +   ++Y   I  S   + +I ND++++ K+E  K+    +PV     +++  +L  
Sbjct: 314 ---DAEQLKYLKTIHVSAITLGNIFNDIIEMDKLERRKVQFDNQPVDFTGFMADLENLSG 370

Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
           L    K +         +P  ++AD   ++QI  N++ NA+ FT  G +I++      N+
Sbjct: 371 LLVQPKGLKFIMEPQLPLPEKVIADGTRLRQILWNLIGNAVKFTQQG-KIVVRVRREGND 429

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQI-PNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
            +I  V D+G+G+   E +K    + Q+   +      GTG+GL ++K +  +  G   +
Sbjct: 430 RLIFEVEDSGMGIPEDEQDKIFAMYYQVKDRNGGRPATGTGIGLAVSKRLAQSMGGDITV 489

Query: 795 FSTPAKGTLIEIIF 808
            ST   G+   +  
Sbjct: 490 KSTQGVGSCFTLTI 503



 Score = 41.9 bits (97), Expect = 0.47,   Method: Composition-based stats.
 Identities = 16/124 (12%), Positives = 35/124 (28%), Gaps = 5/124 (4%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN-TWYGKTTLWPIE 153
               +  +    G    +++G+   DV      +      + + R N +   +  L   +
Sbjct: 177 FSGCNRAMELLTGKSEKQLVGLTPKDVYAPDIAEKVMETDEKVFRHNVSLTYEQWLVYPD 236

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
           G       +L  +P Y R  +  G  GFG           +   +   +  +        
Sbjct: 237 GRKACF--ELRKVPFYDRVGKRHGLMGFG--RDITERKRYQDALENASRDKTTFISTISH 292

Query: 214 HSSV 217
               
Sbjct: 293 ELRT 296



 Score = 40.0 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 23/228 (10%), Positives = 55/228 (24%), Gaps = 14/228 (6%)

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ----EDFHTINLNQYTKKQYFGTLQNN 295
           +S + E        L      L       L       E+   +N     +++        
Sbjct: 73  LSVVVEQLEESRQRLSRLVDKLEVMRHRDLELNKQLTENITQLNQEIVEREKAEKAHLQV 132

Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKY 354
             +  E + HR    +     +   L    +D  P   +  +        N +  LLT  
Sbjct: 133 VDKLKEEMGHREQAQIE--LGQQSALLRSFLDASPDLVYYRNEDNEFSGCNRAMELLTGK 190

Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
                +        L      + + A K +           +      + +         
Sbjct: 191 SEKQLVG-------LTPKDVYAPDIAEKVMETDEKVFRHNVSLTYEQWLVYPDGRKACFE 243

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
                  ++  +     G   +  + +  +  +E       + +   S
Sbjct: 244 LRKVPFYDRVGKRHGLMGFGRDITERKRYQDALENASRDKTTFISTIS 291


>gi|73748463|ref|YP_307702.1| sensor histidine kinase [Dehalococcoides sp. CBDB1]
 gi|73660179|emb|CAI82786.1| sensor histidine kinase [Dehalococcoides sp. CBDB1]
          Length = 852

 Score =  306 bits (785), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 111/748 (14%), Positives = 246/748 (32%), Gaps = 82/748 (10%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRL----------CDVSDILHIDPNNHIGD----- 135
             G L   +    +  G    ++ G              D+   +  D     G      
Sbjct: 159 PDGKLIFANHIFEEVTGYLVSEVTGEDWKSCGLFSRETTDLIIKMFQDRKPDTGQPFELQ 218

Query: 136 LLKRQNT---WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192
           L+ +      + G + +   +  + Y+ +  +                        +   
Sbjct: 219 LIHKNGQTCWFSGHSRIINRDNKSSYLQLSAS---------------------DITICKK 257

Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD 252
              + +          +      S         S  +   + R       +T+  A   +
Sbjct: 258 SEKMLRLTRFALEQTTDAIFWTDSEGNFIDVNQSACNSLGYRREDLLKLKVTDIDALITN 317

Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
            +  + +       + L  +     I+  +   +     +Q ++ E    ++   +  L 
Sbjct: 318 QIDWKAHWKNLKTSAYLSFESIHRNISGEEIPVEITANYMQCDNMEYN--VAIARNIHLR 375

Query: 313 AYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
              ++    T  +V+       ++   G++  AN S      Y   +       L+ +  
Sbjct: 376 KKAEKQLKFTSFSVEHTADSVLWINQSGSIIAANMSACQSLGYTRTEL----CSLNVINI 431

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
            P        K + +        +  + + T     +N   +         +F       
Sbjct: 432 NPVCV-AERWKTLWVRLKQAINFSLESDMFT-----KNGQQIPIEVMCNFLEFEGIDYCC 485

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
            +  +  + +    ++     +     +  SD + +++ +  I   NRA +K      +D
Sbjct: 486 AVLRDITERKKVDARLLRAAEEWRITFDNISDIVFLLDNDFNIQRANRAFTKTLNCQPQD 545

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
           +L K     L       +N       +    Q +        K          I  +  +
Sbjct: 546 VLNKKCYQVLHHADCPKVNCPKLIAFNTKKTQRIAYFEENIDK-----HFEETIDPILDA 600

Query: 552 SCY----SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
           +        T+ D++E  +   +L    ++A        +  A ++HE+  PLT++IGFS
Sbjct: 601 NGLSMGTVHTIKDVTEHHKIAAQLMITDRLA-----SLGELSAGLAHELNNPLTSVIGFS 655

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
           E+I+ +           +    I +      +I+ +LL  ++    +     + V +++ 
Sbjct: 656 ELIQEKIL----PEDLRQDIQIISQEAQRAAEIIRNLLTFAR----RHEPSKDWVDMNQI 707

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF--TPSGGQI 725
           + + +++         I + T+   N+P I AD   ++Q+ LNI+ NA  +  T S G+ 
Sbjct: 708 IHKVLAICNYGQKVHNIQLITNLDPNLPEIKADYFQMQQVLLNIVINA-EYFMTQSHGEG 766

Query: 726 IISTTHTS-NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
            I  +    N+ + + +RD G GM+   L     PF          G+GTGLGL +   +
Sbjct: 767 TIVISSRKFNDSIQISIRDDGPGMSENVLNHIFDPFFTTK----EVGKGTGLGLSIGHGI 822

Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPLYD 812
           +  + GK Y  S+  KG    I  P+  
Sbjct: 823 ITQHGGKLYAESSEGKGATFFIEIPINQ 850



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 35/257 (13%), Positives = 75/257 (29%), Gaps = 15/257 (5%)

Query: 319 ENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
            + + + +   P+       G L +AN  F  +T Y   +          L         
Sbjct: 141 PDFSDKNLPATPLVMGFQPDGKLIFANHIFEEVTGYLVSEVTGEDWKSCGLFSRETTDLI 200

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
                +   R   T       L  I  N +             +     +  +    +  
Sbjct: 201 IK---MFQDRKPDTGQPFE--LQLIHKNGQTCWFSGHSRIINRDNKSSYLQLSA--SDIT 253

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
             + +++ + +        LE T+D I   + EG  +  N++     GY  ED+L+   T
Sbjct: 254 ICKKSEKMLRLT----RFALEQTTDAIFWTDSEGNFIDVNQSACNSLGYRREDLLKLKVT 309

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY--SL 556
                 T      +     +L     L   ++      + + + I    +   +      
Sbjct: 310 DIDALITNQ--IDWKAHWKNLKTSAYLSFESIHRNISGEEIPVEITANYMQCDNMEYNVA 367

Query: 557 TMHDISEWKQEKNKLSH 573
              +I   K+ + +L  
Sbjct: 368 IARNIHLRKKAEKQLKF 384



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/278 (11%), Positives = 75/278 (26%), Gaps = 9/278 (3%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWY 144
            +  D+ G   ++++    ++G     ++ +++ D+  ++    +       LK      
Sbjct: 276 IFWTDSEGNFIDVNQSACNSLGYRREDLLKLKVTDIDALITNQIDWKAHWKNLKTSAYLS 335

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            ++    I G    +P+++ A  +   N E++      I     +        K      
Sbjct: 336 FESIHRNISGE--EIPVEITANYMQCDNMEYN----VAIARNIHLRKKAEKQLKFTSFSV 389

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH-KDDVLKTEKYPLLT 263
            H  +     +          S      + R +    ++         +  KT    L  
Sbjct: 390 EHTADSVLWINQSGSIIAANMSACQSLGYTRTELCSLNVININPVCVAERWKTLWVRLKQ 449

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
           +   SL                   F   +                 + A          
Sbjct: 450 AINFSLESDMFTKNGQQIPIEVMCNFLEFEGIDYCCAVLRDITERKKVDARLLRAAEEWR 509

Query: 324 ETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDI 360
            T D      F+  +  N+  AN +F      +  D +
Sbjct: 510 ITFDNISDIVFLLDNDFNIQRANRAFTKTLNCQPQDVL 547


>gi|37679341|ref|NP_933950.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
 gi|37198084|dbj|BAC93921.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
          Length = 718

 Score =  306 bits (785), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 93/490 (18%), Positives = 194/490 (39%), Gaps = 32/490 (6%)

Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
           +L +T+   ++          L   P +                     SA+   +    
Sbjct: 15  WLSITQEGWIEAYNQQAQSCELWHQPLMVGEALTCVHPSLIFYEWVKQLSAQSPPLSIMS 74

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
             +   T     +     +   Q  +  + +  R    ++  ++ +L    +  + GI  
Sbjct: 75  TRATHWTLSASPRTQGGFDLWLQEAVCDDAL--RDENTRLRRDIERLDFAAQGANLGIWD 132

Query: 468 INREGIILSTNRAVSKLFGYPVEDILR------------KPFTVFLEQNTPSVMNHYLTE 515
            N     +  N+  +         +              + ++  +  +  +     +  
Sbjct: 133 FNPSTGCIFGNKTWATQKKLEPNHLFADDALFSEIINGIEKWSEIVHPDDVAETTDKIQA 192

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLS-LRIIIKKLPFSSCYSL----TMHDISEWKQEKNK 570
            L     +           + +    L +            +       DI + K+ +  
Sbjct: 193 HL-DGETELYHAEFRVRCGDGQWKWILDLGRVFERDQDGVPVRMNGIHVDIDKLKRLQQS 251

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           LS  K  AE  +  KS FLA +SHE+RTPL A++G+++++   +       ++ EY   I
Sbjct: 252 LSETKDKAEVANRAKSIFLANMSHELRTPLNAVLGYTQLM---KCDQRLTAKHHEYLEII 308

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
           +RSG  +L ++ND+LD+SKI++G   +  +  +  E   E   L+Q+ A +K++ +    
Sbjct: 309 NRSGEHLLSLINDVLDMSKIDAGHSVVERKWFNFREVSEEINDLMQMKAMQKQLTLHCRV 368

Query: 691 ANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS----NEEVILRVRDTG 745
            +++P  +L D+   +Q+ +N+L NAI FT  G  + ++    +      +V   V D+G
Sbjct: 369 EDSVPHFVLGDVVKTRQVLINLLGNAIKFTYRG-NVRLNIASEALQNGQHKVTFEVSDSG 427

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G++    E+  +PF Q+ +       GTGLGL ++K  V+   G+  + S   +G+   
Sbjct: 428 IGISEENQERVFQPFEQLDSDITQN--GTGLGLSISKQFVELMGGQLVLKSELHRGSTFS 485

Query: 806 IIFPLYDTSH 815
               + +TS 
Sbjct: 486 FSL-VMETSE 494


>gi|168185721|ref|ZP_02620356.1| sensory transduction histidine kinase [Clostridium botulinum C str.
           Eklund]
 gi|169296297|gb|EDS78430.1| sensory transduction histidine kinase [Clostridium botulinum C str.
           Eklund]
          Length = 552

 Score =  306 bits (785), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 92/523 (17%), Positives = 198/523 (37%), Gaps = 41/523 (7%)

Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
                 + E    + +   P   F+     + +AN   + L       DI     +  L 
Sbjct: 11  QEQIIKQDEEFYKKLIKVLPDAVFLERDKKIIFANDEGIKLLGGIHKKDILGKDVVEFLH 70

Query: 371 ----------DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
                        KL+DN  ++   + + +   I    +   I                 
Sbjct: 71  EKFEEIIKPKVESKLNDNEEVREQKIVKLNGEVIDVEVKYIYIS---------------- 114

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
            N+  E+  +  I  +    +  ++ +         + E     + I + +  I   N+ 
Sbjct: 115 PNKNSEDKIKAVIVRDITKRKRYEKALRESESLHRKLTELLPMAVCIHDYD-KIEFANKN 173

Query: 481 VSKLFGY-PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
            +++ G      ++ +    F+ ++  S     L +I     +              K++
Sbjct: 174 CAEILGIEDKNKLINRSIFEFIYKDNISPSKKRLKKIEDYGEKILPSFNNKAICVNGKII 233

Query: 540 SLRIIIKKLPFSSCY--SLTMHDISEWKQEK------NKLSHAKKIAEKESSHKSDFLAR 591
            +      L   +         DI+++ Q +       +     +   + +  +++F A 
Sbjct: 234 DIETWSTTLYDGNTVKILSVFRDITDYLQLEKIKQRAEENRILLEKEREFNKIRTEFFAN 293

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNP----RYIEYANYIDRSGNLVLDIVNDLLDI 647
           +SHE++TPL  I+G  +++         +     +  +    + ++ N +L ++N+++DI
Sbjct: 294 LSHELKTPLNIILGSQQLLNLYLGNLNKSEVNLPKIKQNLKILKQNCNRLLRLINNIIDI 353

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707
           + I SG   ++ +  ++   + +    V  YA    I I           L D   +++I
Sbjct: 354 TIINSGFFGMNLKNQNIVSIIEDITLSVVDYAKNNDIKIIFDTDIEEKITLCDEEKIERI 413

Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
            LN+LSNA+ FTP GG I ++  H   + + + VRD G+G+   +       F Q+  S 
Sbjct: 414 MLNLLSNAVKFTPKGGNIKVNI-HDDGDRIKITVRDNGIGIPKDKTHIIFDRFTQVDKSF 472

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
               EG+G+GL L KA+V+ + G+  + +   +G+   I  P+
Sbjct: 473 TRSTEGSGIGLYLVKALVEMHNGRISVDTKYGEGSEFIIDLPI 515



 Score = 45.0 bits (105), Expect = 0.047,   Method: Composition-based stats.
 Identities = 12/164 (7%), Positives = 42/164 (25%), Gaps = 14/164 (8%)

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTK 353
            +  ++                 E E+L  +  +  P+   ++ +  + +AN +   +  
Sbjct: 120 EDKIKAVIVRDITKRKRYEKALRESESLHRKLTELLPMAVCIHDYDKIEFANKNCAEILG 179

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM-------------LYRSDRTCIAASARL 400
            +  + +        +           +K +                  +   I      
Sbjct: 180 IEDKNKLINRSIFEFIYKDNISPSKKRLKKIEDYGEKILPSFNNKAICVNGKIIDIETWS 239

Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
            T+ ++      ++           E + Q   E   +  +  +
Sbjct: 240 TTL-YDGNTVKILSVFRDITDYLQLEKIKQRAEENRILLEKERE 282


>gi|149280501|ref|ZP_01886619.1| two-component sensor histidine kinase [Pedobacter sp. BAL39]
 gi|149228745|gb|EDM34146.1| two-component sensor histidine kinase [Pedobacter sp. BAL39]
          Length = 643

 Score =  306 bits (785), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 105/543 (19%), Positives = 209/543 (38%), Gaps = 38/543 (6%)

Query: 278 INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS 337
           ++           T+    +E    L+  +   L    +             P+   +++
Sbjct: 125 LDETGEVAYIINTTVNITRQELLRELNASSKEYLLKQQERINK----MFLNAPVGMALFT 180

Query: 338 HG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA 396
               + YAN +   +       ++        +   P L D                  +
Sbjct: 181 QDYVIEYANEAICRMWNKGGPKEVTGKSIFQLI---PSLEDTKLKSIFDRVMESGNAYIS 237

Query: 397 SARLHTIQWNRENSLA-MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
                +   N + ++               E      +  E  +  + +RK+E    +L 
Sbjct: 238 KESPVSYNRNGKVAVYYFDLHFEPIYGLEKEVTGFLSLVNEVTEQVVARRKIENAEERLR 297

Query: 456 SILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVE-DILRKPFTVFLEQNTPSVMNHYL 513
              EAT  G   ++ + G I+  +  +++L G+  + D+ ++   + +  +     NH  
Sbjct: 298 LASEATGIGSWDLDLQTGKIIY-SPIMAELLGHSGKFDLSQEELWMLVHPDDIHQANHAF 356

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRII----IKKLPFSSCYSLTMHDISEWKQEKN 569
            E +   +     +I      +E++  + ++     ++         T+ DI+E KQE+ 
Sbjct: 357 EEAMETGIYHCQCRILR---PDEQVFWIGVMGKVQYEQDKSPIRMIGTVMDITESKQEEI 413

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           K              K+DF+A  SHE++TPLT++  +++ +K  +            A  
Sbjct: 414 K--------------KNDFIAIASHELKTPLTSLKAYAQFLKTGKNVT-DPGFVSSIAGR 458

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I+   N +  +V   LD+S+IESGK+ +  E   L++ + E          EK   +R  
Sbjct: 459 IEGQINKMTKLVYSFLDLSRIESGKIEILMEDFDLNQLIREVADDY--VLQEKNHPLRFE 516

Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749
               +P I AD   V Q+  N++SNAI ++P GG + I         +++ V D G+G+ 
Sbjct: 517 -PTELPLIRADRNKVMQVIDNLISNAIKYSPQGGAVTIH-ATNEQGFLVVNVEDHGIGID 574

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           N  + K  + + +I + Q     G G+GL L   ++  + G+  + S P KG+      P
Sbjct: 575 NNHVTKIFERYYRIDDLQVKNASGFGIGLYLCADIIKRHHGEIGLHSEPGKGSNFYFKLP 634

Query: 810 LYD 812
           L  
Sbjct: 635 LQP 637


>gi|116249796|ref|YP_765634.1| two-component sensor histidine kinase transcriptional regulatory
           protein [Rhizobium leguminosarum bv. viciae 3841]
 gi|115254444|emb|CAK05518.1| putative two-component sensor histidine kinase transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 861

 Score =  306 bits (785), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 135/727 (18%), Positives = 266/727 (36%), Gaps = 37/727 (5%)

Query: 107 GNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVP--IDLA 164
           GN   +++G    +       +     G  LK ++    +  +  +          ++  
Sbjct: 149 GNARPELLGQLPPETGAPQDGE-FLAFGLWLKSRSASELEKAIDRLRDEAQSFDMVVETI 207

Query: 165 ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDI 224
              I       SG R F  V      N+ RA    L  +   L        ++       
Sbjct: 208 RDEILEAQGRVSGGRAF--VRFV-ALNNLRAELAELRIERDRLMTSISAFQTMLDAIDMP 264

Query: 225 FSQQSPPPHLRMKNKVSSLTEYYAHKDDVL--------KTEKYPLLTSEESSLPEQEDFH 276
             Q+ P   L   N+              +           +  +  +     P  +   
Sbjct: 265 AWQRDPVGRLTWVNQAYGEAVEARSPQQAINEGREMLTTVARERIRATTTPESPFHDKIS 324

Query: 277 TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY 336
           T+     T       ++     +   +   +  ++ A  +       ET+D    P  ++
Sbjct: 325 TVVRGNRTFFDVV-DVRVPGGSAGIAIDVSDIEAVRAELERTLKSHAETLDHLATPVAIF 383

Query: 337 SHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIA 395
                L + N +F+ L +   +  +E     S LL+  + +     +             
Sbjct: 384 DGDRRLQFYNQAFVALWEL-DIAFLEGRPDNSELLERLRAAKKLPDQLNWKSWK------ 436

Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
             A L   +     S  +  +P  +  +        G      +    +  +E     L 
Sbjct: 437 -EAALSVYRALDTQS-DLWHLPNGQTLRVFATAHPQGGATWVFENLTEQVDLETRYNTLV 494

Query: 456 SI----LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
            +    ++  S+G+A+   +G I  +N A   L+G    +         L +      + 
Sbjct: 495 KVQGETIDHLSEGVAVFGPDGRIRLSNPAFRALWGITETEAKPGTHIRALGEACTPSYDR 554

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLS---LRIIIKKLPFSSCYSLTMHDISEWKQEK 568
                   +L  + +          +L S   L   +  LP +    LT  ++++  + +
Sbjct: 555 PDGWKTFAELITSFDDERRSGQGTLELFSGLVLDYAVIPLPNAQ-TMLTFVNMTDSVRAE 613

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
             L+   +   K    K+DF+  VS+E+R+PLT IIGF+++++    GPL   R  EY +
Sbjct: 614 RALTEKNEALRKADELKNDFVQHVSYELRSPLTNIIGFTDLLRTPGVGPLT-ERQAEYID 672

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
           +I  S +++L +VND+LD++ +++G M L++  + L++ + +    +    +E  + +  
Sbjct: 673 HISTSSSVLLTLVNDILDLATVDAGIMRLNYADIDLNDLLDDVSMQIADRLHESGVALEI 732

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748
           +    +  I+AD + +KQI L +LSNA +F+P G  I +   H    + +  V D G G+
Sbjct: 733 TAPAYLGSIVADPQRLKQILLKLLSNAANFSPEGTSISLEC-HREGTDFVFAVSDRGPGI 791

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           +   +      F     S +    G GLGL +  + V  + G   I S P KGT +    
Sbjct: 792 SPDMIATVFDRFATGAKSGKR--GGAGLGLSIVDSFVSLHHGDVTIDSEPGKGTTVVCRI 849

Query: 809 PLYDTSH 815
           P  D  H
Sbjct: 850 PSVDVPH 856



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 39/384 (10%), Positives = 103/384 (26%), Gaps = 34/384 (8%)

Query: 87  WNIDAHGYLKEISEELPKTI-GNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
           W  D  G L  +++   + +      + I      ++ +        I      ++ ++ 
Sbjct: 266 WQRDPVGRLTWVNQAYGEAVEARSPQQAINEGREMLTTV----ARERIRATTTPESPFHD 321

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           K +         +  +D+         R   G  G  I          RA  +R  K  +
Sbjct: 322 KISTVVRGNRTFFDVVDV---------RVPGGSAGIAI--DVSDIEAVRAELERTLKSHA 370

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP----- 260
              +      ++      +         + +     +  E      ++L+  +       
Sbjct: 371 ETLDHLATPVAIFDGDRRLQFYNQAF--VALWELDIAFLEGRPDNSELLERLRAAKKLPD 428

Query: 261 ---LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS----KESFEYLSHRNHPSLSA 313
                + +E++L       T +   +        +   +      ++ + +      L  
Sbjct: 429 QLNWKSWKEAALSVYRALDTQSDLWHLPNGQTLRVFATAHPQGGATWVFENLTEQVDLET 488

Query: 314 YFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
            ++    +  ET+D       V+   G +  +NP+F  L      +     G     L  
Sbjct: 489 RYNTLVKVQGETIDHLSEGVAVFGPDGRIRLSNPAFRALWGITETEA--KPGTHIRALGE 546

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
                 +       +    T      R         + L + +      N        N 
Sbjct: 547 ACTPSYDRPDGWKTFAELITSFDDERRSGQGTLELFSGLVLDYAVIPLPNAQTMLTFVNM 606

Query: 433 IEPEDVDTRINKR-KMEIEVMQLC 455
            +    +  + ++ +   +  +L 
Sbjct: 607 TDSVRAERALTEKNEALRKADELK 630


>gi|317486463|ref|ZP_07945288.1| response regulator receiver domain-containing protein [Bilophila
           wadsworthia 3_1_6]
 gi|316922266|gb|EFV43527.1| response regulator receiver domain-containing protein [Bilophila
           wadsworthia 3_1_6]
          Length = 781

 Score =  306 bits (785), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 93/486 (19%), Positives = 193/486 (39%), Gaps = 34/486 (6%)

Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399
            L Y N + L +      +       L   +   + +         L   D         
Sbjct: 23  ELLYVNRAGLDMFHLSREELFSGKKYLCYEIFHGRNTPCPFCTNNYL--KDSGFYEWEHY 80

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459
              +    +  L          ++      +        D    K K++ +  Q  ++L 
Sbjct: 81  NEQL---GKTYLL--------KDRKVLWDGRESRIEFVFDVSKYKNKLDKQGKQQAAMLR 129

Query: 460 ATSDGIAIINR--EGIILSTNRAVSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTE 515
           +   GIA ++   E  IL        + GY  E      +   +++           + E
Sbjct: 130 SLPGGIARLDARDERTILWYGSEFLSIIGYTEEQFKEELQSQCLYVYPEDMEQAEAAMHE 189

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISE----WKQE 567
                    ++   +  + + + L++         S      Y     D++E     + +
Sbjct: 190 AKETGRSSIMQGRIVTRSGKIRHLTITFSYMDGKDSEDGIPSYYSLGIDVTETVERQRLQ 249

Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
           +  L  A ++A+  +  K++FL+R+SH+IRTP+ AI+G + +            +  +  
Sbjct: 250 QQALEDACRVAKHANQGKTEFLSRMSHDIRTPMNAIVGMTAIAGAHI---EDTQKVRDCL 306

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
             I+ S   +L+++N++LD+SKIESG++++     SL   V     + +    EK   + 
Sbjct: 307 KKINTSSKHLLNLINEVLDMSKIESGRLDVRANDFSLSNLVQNVFEVCRPMIIEKGHHLT 366

Query: 688 TSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTT----HTSNEEV-ILRV 741
            + +      +  D   ++Q+ +NILSNA+ +TP+GG++  S      H     V     
Sbjct: 367 MNISKVRHEGLYGDESRLQQVLVNILSNAVKYTPAGGRLHFSIEEKPTHAEGASVFYFTF 426

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            D G+GM+   + +  +PF +  +S+  + +GTGLG+ +++ ++    G+  + ST  KG
Sbjct: 427 EDNGIGMSEEFVGRIFEPFSRAEDSRISKIQGTGLGMAISQNIIHMMNGEITVDSTLGKG 486

Query: 802 TLIEII 807
           +   + 
Sbjct: 487 SRFTVS 492


>gi|300865281|ref|ZP_07110095.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
 gi|300336754|emb|CBN55245.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
          Length = 963

 Score =  306 bits (785), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 103/574 (17%), Positives = 198/574 (34%), Gaps = 88/574 (15%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
              +A     E    +     P P  +     G     N +F  +    S + I    G 
Sbjct: 157 EQRTAELRLSEEKFAKAFRSSPNPITITRLSDGQHIEVNDAFCAMISCTSEEII----GK 212

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
           + +      ++ +  +                +        E   A+      +      
Sbjct: 213 TAIELGLWANEKDRARLFQGLAEQGIVRNYEFQFCPKT--GEIRTALLSAEIIEIQGQTC 270

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
                 +  +  D +  + K+      L +       G   ++      + +  + ++F 
Sbjct: 271 ---VISVSQDISDRKRAEEKLRASEAFLAAAQRIAHVGSCEVDLLNNNTTWSEELFRIFD 327

Query: 487 YPVEDI--LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
                     + F  ++  +   +        L     Q +E   +       +  +   
Sbjct: 328 LDPNQPKPTCEEFRQYIHPDDRELWEKKFNSTLVEGKIQKIEYRIV--RSNGSIRHIEAR 385

Query: 545 IKKLPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
            + +           + M DIS+ KQ +  +  AK+ A+K +  KS+FL+ +SHE+RTPL
Sbjct: 386 GEPVLNQQGQVQKLLIIMMDISDRKQAEIAVQKAKEAADKANRAKSEFLSNMSHELRTPL 445

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
            AI+GF++++              E+   I RSG  +L+++N++L +SKIE G++ ++  
Sbjct: 446 NAILGFTQLLARDSSLKF---EQKEHLGIISRSGEHLLNLINNILQMSKIEVGQVTVNKN 502

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSN----- 714
              L   +     + QL A +K + +    A ++P+ +  D   ++Q  +NIL N     
Sbjct: 503 NFDLYRLLESIEKMFQLQAEKKNLQLIIDIAPDLPQYVQTDESKLRQTLINILGNAIKFT 562

Query: 715 --------------AIH-----------------------------------F----TPS 721
                         AI                                    +    T S
Sbjct: 563 QEGGVTLRVRMKEEAIKKKEDERISQKDNFPVKQLKSIDLEPIEIAKNQEKIYNWELTES 622

Query: 722 GGQIIISTTHTSNEE--VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
              I  S   + +    +   + DTG+G+   E++   KPF Q  +      EGTGLGLP
Sbjct: 623 TKNIKNSLCFSDDSSFFLQFEIEDTGLGIAPEEIDNLFKPFVQTESGM-KAQEGTGLGLP 681

Query: 780 LAKAMVDANMGKFYIFSTPAKGTLI----EIIFP 809
           +++  V    G   + S   KG++     EI  P
Sbjct: 682 ISRQFVQLMGGDITVNSDINKGSIFKFNIEISLP 715



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 42/386 (10%), Positives = 96/386 (24%), Gaps = 52/386 (13%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI-DPNNHIGDLLKRQNTWYGKTTLW 150
            G   E+++     I   + ++IG    ++    +  D       L ++      +    
Sbjct: 188 DGQHIEVNDAFCAMISCTSEEIIGKTAIELGLWANEKDRARLFQGLAEQGIVRNYEFQFC 247

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL--- 207
           P  G      +    + I  +    S      +              +  +   +     
Sbjct: 248 PKTGEIRTALLSAEIIEIQGQTCVIS------VSQDISDRKRAEEKLRASEAFLAAAQRI 301

Query: 208 -------HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
                   ++   +++  +E + IF      P    +       +Y    D  L  +K+ 
Sbjct: 302 AHVGSCEVDLLNNNTTWSEELFRIFDLDPNQPKPTCEE----FRQYIHPDDRELWEKKFN 357

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
               E      +      N +    +     + N   +  + L      S     +    
Sbjct: 358 STLVEGKIQKIEYRIVRSNGSIRHIEARGEPVLNQQGQVQKLLIIMMDISDRKQAEIAVQ 417

Query: 321 LTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
              E  DK               A   FL    ++    +    G + LL          
Sbjct: 418 KAKEAADKAN------------RAKSEFLSNMSHELRTPLNAILGFTQLLARDSSLKFEQ 465

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAM---TFIPFEKANQFPENMPQNGIEPED 437
            +                 L  I  + E+ L +        +           N      
Sbjct: 466 KE----------------HLGIISRSGEHLLNLINNILQMSKIEVGQVTVNKNNFDLYRL 509

Query: 438 VDTRINKRKMEIEVMQLCSILEATSD 463
           +++     +++ E   L  I++   D
Sbjct: 510 LESIEKMFQLQAEKKNLQLIIDIAPD 535


>gi|254423446|ref|ZP_05037164.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Synechococcus sp. PCC 7335]
 gi|196190935|gb|EDX85899.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Synechococcus sp. PCC 7335]
          Length = 672

 Score =  306 bits (785), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 86/406 (21%), Positives = 177/406 (43%), Gaps = 26/406 (6%)

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINK--RKMEIEVMQLCSILEATSDGIAIINREGI 473
           I      +  E +       E ++    +   ++  E  +L S++   +DG  +++ +  
Sbjct: 236 IDLPLGGELGELIYSFNDMAERLERYEEQNIEELTAEKAKLESLVSTIADGAILLDAKTN 295

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
           ++  N A  +L G+             L+    + +   L + L  +  +  E   L   
Sbjct: 296 LILANVAARRLLGWEAASPPSGSILDGLQPEVRAQLAPALAQALISEAHEGSEFRILLDG 355

Query: 534 KEEKLLSLRIIIKKLP-FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
                + L  ++ +        ++T+ DI+                   +  KS F++ V
Sbjct: 356 NRTIRVLLNTVLDQSRANVKGMAITLQDITR--------------EVALNEAKSQFISNV 401

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHE+RTPL  I  F E + ++    L      E+    +   + +  +VND+LD+S++ES
Sbjct: 402 SHELRTPLFNIKSFIETL-HEYGEDLSEQERREFLATANNETDRLTRLVNDVLDLSRLES 460

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712
            +    F  V + + + + +   QL A +K+I + +   + +P +L +   + Q+  N++
Sbjct: 461 NR-RYEFSAVEVHQPIDQVLRTYQLNAKDKQIELASDIESALPAVLGNYDLLLQVFGNLV 519

Query: 713 SNAIHFTPSGGQIIISTTHTSNEE------VILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
            NA+ FTP+GG+++I   H  + +      V + + DTG+G+ + +     + F ++ N 
Sbjct: 520 GNALKFTPAGGKVVIRAYHAPSAQPNLLQSVRIEIGDTGIGIDDEDQAAIFERFFRVEN- 578

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
           +    EGTGLGL + K ++D +  +  +      GT      P+YD
Sbjct: 579 RVHTLEGTGLGLSIVKNIMDKHNSQINLVGEVGVGTTFWFDLPVYD 624


>gi|119489826|ref|ZP_01622581.1| Multi-sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106]
 gi|119454254|gb|EAW35405.1| Multi-sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106]
          Length = 1666

 Score =  306 bits (785), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 133/861 (15%), Positives = 288/861 (33%), Gaps = 109/861 (12%)

Query: 44   PCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRF----TWNIDAHGYLKEIS 99
            P ++  ++   T +    ++N    + + + + + +   +R      W  D    +    
Sbjct: 584  PLYNEQDEVYRTIEIASDITNRKQAEEQLSKLSERLQLALRSGNIGIWEWDIVNNILTWD 643

Query: 100  EELPKTIGNYAFKMIG--MRLCDVSDILHIDPNNHI-GDLLKRQNTWYGKTTLWPIEGTN 156
            + + +  G       G              + +  I    L+ +  +  +  +   +G+ 
Sbjct: 644  QRMYELYGVKPSDFEGVYQAWQQGLHPEDRERSEWICQQALQGKREYNTELRVVHPDGSI 703

Query: 157  LYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE---IKKG 213
                +   A+       E  G    GI +            K   +    + +   +   
Sbjct: 704  --HYLKADAIVQRDEADEPIGV--VGINYDITERKQTEIKLKEQKELLQSIFDNIPVMIA 759

Query: 214  HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE 273
                ++    +  +       + +          A  D   +      L +E       +
Sbjct: 760  LMDSQRNFIWVNPEWEKVSGYKFEETHHFDVWGDAFPDPKYRQYIAEKLQTE--PGSWVD 817

Query: 274  DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF 333
                +   + T + +     ++ K         +         E E    + ++   +  
Sbjct: 818  VKVRVRDGKVTDQIWINIFLSDGKIMGIGQDITDRKREDKKLRESEERLRKVLENMTVML 877

Query: 334  FVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
              +   GN+   N +   +T Y + + I     L  L    +   N         +    
Sbjct: 878  DAFDQHGNIIVWNKACEQVTGYTAAEMINNPEALVWLYPNSEYRQNMINHW---QKRGDN 934

Query: 393  CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK--RKMEIE 450
                   L     + +                       G+  +  + +  +  +++  E
Sbjct: 935  YYDWEWNLTAKDGSVKTISWTNVSDVYPVPG----WATWGVGIDVTERKYQEEKQRLLYE 990

Query: 451  VMQ-------LCSILEATSDGIA-IIN-----------REGIILSTNRAVSKLFGY---- 487
            + Q       L S LE     I   I+            +  +   +   S  F +    
Sbjct: 991  INQAMTGAEDLDSALEIALSFICESIDWDFAEAWIPDIEQQSLELCSHFYSNSFNFEDFF 1050

Query: 488  ---------PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT--------- 529
                     P E +  + F     +    +     +  L  DL + ++  T         
Sbjct: 1051 LGSIKTKFSPNEGVPGRVFMTQKPEWLTPISQQLDSVYLRKDLAKLVQLETALAIPIQLE 1110

Query: 530  ------------LGSTKEEKLLSL--------RIIIKKLPFSSCYSLTMHDISEWKQEK- 568
                            ++  L+ L         + +++             + E  + + 
Sbjct: 1111 TQVVAIFVFYCREFREQDHYLIELVCSLGEQLALTLQRRRIEQEVREVNQHLEERVKART 1170

Query: 569  -------NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
                     L  +K  A+  +  KS FLA++SHE+RTPL  I+G++++++  +       
Sbjct: 1171 AALELTNQALKQSKANADAANLAKSKFLAQMSHELRTPLNGILGYTQILQRDQ---TLTE 1227

Query: 622  RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
            +  +    I + GN +LD++ND+LD++KIE+ KM+L+   + L   + E   ++   A  
Sbjct: 1228 QQQQSLEIIYKCGNHLLDLINDILDLAKIEAQKMDLYPNTLKLKAFLDEIAVIIHPRATG 1287

Query: 682  KRILIRTSFANNIPRILA--DLRSVKQIALNILSNAIHFTPSGGQI----IISTTHTSNE 735
            K +         +  +    D + ++QI LN+LSNA+ FT +G  I    +IS    SN 
Sbjct: 1288 KGLTWTYFTDPQLSNLFCLVDSKRLRQILLNLLSNAVKFTDTGEVILEVEVISPFTNSNP 1347

Query: 736  EVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
             V LR  V+DTG+G+ + ++E   +PF Q   +   + EGTGLGL + + +++    K  
Sbjct: 1348 YVTLRFKVKDTGIGIPSEKIESLFQPFEQGTEAY-KQSEGTGLGLTITQKLLEMMGAKLE 1406

Query: 794  IFSTPAKGTLIEI--IFPLYD 812
            + S   +G+L       P+ +
Sbjct: 1407 VESQYNQGSLFRFDLQLPIVE 1427



 Score =  127 bits (319), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 58/508 (11%), Positives = 145/508 (28%), Gaps = 39/508 (7%)

Query: 95  LKEISEELPKTIGNYAFKMIGMR--LCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPI 152
           +  ++    K       ++        D       D    +  L    N+         I
Sbjct: 512 VLYVNPIYEKIWEQSCQELYQKHDAWLDAVHPD--DREFLVEQLNPSLNSGELVVEYRII 569

Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL-DKKFSHLHEIK 211
           + T     I   A P+Y+   E   +R   I               +L ++    L    
Sbjct: 570 QSTGDIRWILSKAFPLYNEQDEV--YRTIEIASDITNRKQAEEQLSKLSERLQLALRSGN 627

Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMK----NKVSSLTEYYAHKDDVLKTEKYPLLTSEE- 266
            G    +     +   Q       +K      V    +   H +D  ++E       +  
Sbjct: 628 IGIWEWDIVNNILTWDQRMYELYGVKPSDFEGVYQAWQQGLHPEDRERSEWICQQALQGK 687

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD----EGENLT 322
                +      + + +  K      ++ + E    +      +     +    E + L 
Sbjct: 688 REYNTELRVVHPDGSIHYLKADAIVQRDEADEPIGVVGINYDITERKQTEIKLKEQKELL 747

Query: 323 PETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
               D  P+   +        + NP +  ++ YK  +              PK     A 
Sbjct: 748 QSIFDNIPVMIALMDSQRNFIWVNPEWEKVSGYKFEETHHFDVWGDA-FPDPKYRQYIAE 806

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
           K   L     + +    R+   +   +  + +                  GI  +  D +
Sbjct: 807 K---LQTEPGSWVDVKVRVRDGKVTDQIWINIFLSD----------GKIMGIGQDITDRK 853

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
              +K+     +L  +LE  +  +   ++ G I+  N+A  ++ GY   +++  P  +  
Sbjct: 854 REDKKLRESEERLRKVLENMTVMLDAFDQHGNIIVWNKACEQVTGYTAAEMINNPEALVW 913

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII-IKKLPFSSCYS--LTM 558
                    + +            +     + K+  + ++    +  +     ++     
Sbjct: 914 LYPNSEYRQNMINHWQKRGDN-YYDWEWNLTAKDGSVKTISWTNVSDVYPVPGWATWGVG 972

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKS 586
            D++E K ++ K    +++  + +   +
Sbjct: 973 IDVTERKYQEEK----QRLLYEINQAMT 996



 Score =  118 bits (297), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 49/421 (11%), Positives = 128/421 (30%), Gaps = 28/421 (6%)

Query: 180 GFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSS---VEKEKYDIFSQQSPPPHLRM 236
           G   +   R   +     +++ +    +  ++  H          Y+   +QS     + 
Sbjct: 474 GINTLQTRRARQESEEKFRQIAENIGDVFFVRSLHPPQVLYVNPIYEKIWEQSCQELYQK 533

Query: 237 KNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS 296
            +          H DD     +    +     L  +        +          L N  
Sbjct: 534 HDAWLD----AVHPDDREFLVEQLNPSLNSGELVVEYRIIQSTGDIRWILSKAFPLYNEQ 589

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVDKC----PIPFFVYS-HGNLFYANPSFLLL 351
            E +  +   +  +     +E  +   E +        I  + +    N+   +     L
Sbjct: 590 DEVYRTIEIASDITNRKQAEEQLSKLSERLQLALRSGNIGIWEWDIVNNILTWDQRMYEL 649

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411
              K  D      G+          ++      +  ++ +     +  L  +  +  +  
Sbjct: 650 YGVKPSD----FEGVYQAWQQGLHPEDRERSEWICQQALQGKREYNTELRVVHPDG-SIH 704

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471
            +      + ++  E +   GI  +  + +  + K++ +   L SI +     IA+++ +
Sbjct: 705 YLKADAIVQRDEADEPIGVVGINYDITERKQTEIKLKEQKELLQSIFDNIPVMIALMDSQ 764

Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
              +  N    K+ GY  E+     F V+ +         Y+ E L  +    ++     
Sbjct: 765 RNFIWVNPEWEKVSGYKFEET--HHFDVWGDAFPDPKYRQYIAEKLQTEPGSWVDVKVRV 822

Query: 532 STK---EEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
                 ++  +++ +                DI++ K+E  KL  +++   K   + +  
Sbjct: 823 RDGKVTDQIWINIFLS------DGKIMGIGQDITDRKREDKKLRESEERLRKVLENMTVM 876

Query: 589 L 589
           L
Sbjct: 877 L 877


>gi|90413156|ref|ZP_01221152.1| putative sensor histidine kinase FexB [Photobacterium profundum
           3TCK]
 gi|90325847|gb|EAS42299.1| putative sensor histidine kinase FexB [Photobacterium profundum
           3TCK]
          Length = 798

 Score =  306 bits (785), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 86/394 (21%), Positives = 167/394 (42%), Gaps = 19/394 (4%)

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
           +  + +E E       + ++  +   L S L+A+ D I   N +G     NRA+++L G 
Sbjct: 131 IAMHDLENEVYQRENAQLELAEQSALLKSFLDASPDLIYYRNEKGEFSGCNRAMAELTGK 190

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
             + ++         +     +     ++   ++  T E+        + +  LR +   
Sbjct: 191 TEKGLVGLTPWDVYSEEAAIKIVETDEQVFQQNVSLTYEQWLEYPDGRKAIFELRKVPFY 250

Query: 548 LPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
                         DI+E KQ        +   EK S  K+ F++ +SHE+RTPL  I+G
Sbjct: 251 RRDGQRLGLMGFGRDITERKQ-------YQDAQEKASRDKTAFISTISHELRTPLNGIVG 303

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
            S ++         N     Y   +  S   + +I ND++D+ K +  ++ L  +P+   
Sbjct: 304 LSRMLLETPL----NDEQRGYMRTVHVSAITLGNIFNDIIDMDKSDRRRLELMPKPLDFH 359

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQ 724
           + ++E  ++  L A +K +         +P  I  D   ++Q+  N++ NA  FT  GG 
Sbjct: 360 DFITEMENISSLMAEQKGLRFDLERLTKLPAYIEVDSTRLRQVLWNLIGNATKFTKEGGV 419

Query: 725 I-IISTTH-TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP-NSQQIRGEGTGLGLPLA 781
           I  +S+       E+   V D+G+G+   E++K    + Q+   S  +   GTG+GL ++
Sbjct: 420 ILSVSSEIFEHEAEITFDVEDSGIGIPASEVDKIFAMYYQVKQGSDNLHAVGTGIGLAVS 479

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIF--PLYDT 813
           + +V    G   + S   +G+   +    PL + 
Sbjct: 480 RQLVQLMGGDILVTSDIGEGSTFTVTIRVPLVEA 513



 Score = 46.2 bits (108), Expect = 0.024,   Method: Composition-based stats.
 Identities = 17/126 (13%), Positives = 39/126 (30%), Gaps = 5/126 (3%)

Query: 93  GYLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151
           G     +  + +  G     ++G+   DV S+   I        + ++  +   +  L  
Sbjct: 175 GEFSGCNRAMAELTGKTEKGLVGLTPWDVYSEEAAIKIVETDEQVFQQNVSLTYEQWLEY 234

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
            +G       +L  +P Y R+ +  G  GFG           +   ++  +  +      
Sbjct: 235 PDGRKAIF--ELRKVPFYRRDGQRLGLMGFG--RDITERKQYQDAQEKASRDKTAFISTI 290

Query: 212 KGHSSV 217
                 
Sbjct: 291 SHELRT 296


>gi|78223152|ref|YP_384899.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter
           metallireducens GS-15]
 gi|78194407|gb|ABB32174.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter
           metallireducens GS-15]
          Length = 690

 Score =  306 bits (785), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 86/401 (21%), Positives = 172/401 (42%), Gaps = 38/401 (9%)

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL--EQN 504
           +E       S+LE  SD I + +   ++   N+     FG+   +++    +  L     
Sbjct: 275 LEKSEELYKSLLEDASDAIVVTDENDMVKMVNKMAEDFFGHDAAELVGLSLSRMLTLVGT 334

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564
             S + +   ++         E   L   KE  +  +   I  +         + D++  
Sbjct: 335 QNSSIVYNFFQVAGTGKHVAEEIKFLRKDKELVVGLIHANIVTIGAERLIQAIIRDVTRE 394

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           ++    L  +     + +  K  FL   SHE++TPLT I+G++E+I       + +P  I
Sbjct: 395 REILLNLEKSAADLARLNKMKDSFLGIASHELKTPLTVIMGYAELILTDPPCQV-DPNII 453

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           +  N I  + N + +IV D++D+S I+  ++ L    V ++  V ++++ ++ + + ++ 
Sbjct: 454 DMVNNIAGAANRLDNIVKDMVDVSMIDEKRLQLKLSEVDVNRLVEDSLNELRFFVSMRKQ 513

Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT-------------- 730
            +     + IP I  D   + Q+  N++ NAI FTP GG+I++ST               
Sbjct: 514 QLVFELDDAIPAIKGDTVRLMQLLSNVIGNAIKFTPDGGRIMVSTRAKYILRSKQIPTVD 573

Query: 731 ---------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE-------GT 774
                       +  V + V DTG+G+   +  +    F +  N ++           G 
Sbjct: 574 PVQSLVNIGKDQHLYVEITVADTGIGIDIDDQLRIFDKFYEAGNIEEHSSGKVAFKSRGA 633

Query: 775 GLGLPLAKAMVDANMGKFYIFS---TPAK--GTLIEIIFPL 810
           GLGL ++K +V+ + G+ ++ S    P +  G+   I+ PL
Sbjct: 634 GLGLSISKGIVEMHGGEIWVESPGYNPDQFPGSTFHIVLPL 674


>gi|320352745|ref|YP_004194084.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
            2032]
 gi|320121247|gb|ADW16793.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
            2032]
          Length = 1246

 Score =  306 bits (785), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 105/761 (13%), Positives = 224/761 (29%), Gaps = 67/761 (8%)

Query: 80   PRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR 139
                   +  D  G +  ++    +  G    +++GM + DV               + +
Sbjct: 382  EHAADAIYLADMEGRIINVNVAAEQQTGYSRKELLGMGIIDVDAQTTPQTLADFLAEIPQ 441

Query: 140  QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199
            ++     T      G+ L V + +A LP  S ++        G+              + 
Sbjct: 442  RHVATVDTVHRCKNGSLLPVEVRIAYLP--SEHQPLV----LGVARDISERRRADEALRT 495

Query: 200  LDKKFSHLHEIKKGHSSVEKEK-----YDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254
             +   S   +    ++ +++           S            ++   T       D  
Sbjct: 496  SNDLLSRFIQHSPIYAFIKEVTPTASRTLKASDNFIDMIGMPPAEMIGKTMDELFPADFA 555

Query: 255  KTEKYPLLT--SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
                       S    L   E+F+  +          G     +      +         
Sbjct: 556  AQMTADDWAVVSGGEILRLDEEFNGRSYTTIKFPIELGGTHLLAGY---TIDITERKQAE 612

Query: 313  AYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
                  + L    +   P  F+       +   +   + L       D+ +        D
Sbjct: 613  QALMRMDALLKAMLRNLPFDFWARDTSQRIIMQSDESIRLWG-----DLTVEPSAGWRFD 667

Query: 372  APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
               +      +           ++    L                      +  E +   
Sbjct: 668  QQTV---EHWRANNRRVLGGEIVSEDCALII----GSGEQRQFHNIVAPIREGTEILGIL 720

Query: 432  GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG----Y 487
            GI  +  + +  + ++     QL  ILE    G+   ++ G +L  N    +++G     
Sbjct: 721  GINIDITERQQAEEELRRRENQLQRILEILPIGLWFADKHGTLLRCNPMGIRIWGGEPTV 780

Query: 488  PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK-ITLGSTKEEKLLSLRIIIK 546
             + ++          +      +  L + +   +    E         + K +       
Sbjct: 781  SIGELGLFKAWRLPSREPVEADDWALAKTIRDGVTIVDELLEIEAFDGKRKTILNYSTPI 840

Query: 547  KLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
                       +   D+S+    +++L  A+K+              V+H+    L+ I+
Sbjct: 841  LDDDGRVDGAIVVNLDVSDRMALEDQLLQAQKM-----ESIGRLAGGVAHDFNNMLSVIL 895

Query: 605  GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
            G  E+       P  +P +      I  +G    D+   LL  ++    +  +  + + L
Sbjct: 896  GHCELALKGL--PPEHPLFTR-LQNIREAGERSADLTRQLLAFAR----RQTVAPKVLDL 948

Query: 665  DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724
            +E V   + +++     + I +      N+  +  D   + QI +N+  NA       G+
Sbjct: 949  NETVEGMLKMLRRLI-GEDIDLAWLPGRNLGAVKIDPSQLDQILVNLCVNARDAIGETGR 1007

Query: 725  IIISTT--------------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
            I I T                     V+L V DTG GM    +    +PF     +    
Sbjct: 1008 ITIQTATVSLDEAYCTTHRDCQPGAYVLLAVSDTGCGMAPETISHLFEPFFTTKET---- 1063

Query: 771  GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
            G+GTGLGL     ++  N G  ++ S   +GT   +  PL+
Sbjct: 1064 GKGTGLGLATVYGIIRQNNGCIHVDSEQGRGTTFRMYLPLH 1104



 Score = 93.9 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 58/435 (13%), Positives = 128/435 (29%), Gaps = 39/435 (8%)

Query: 181 FGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK- 239
             +     V +   A+   L  +            +   + +   S       + ++++ 
Sbjct: 72  VALAQSEAVHSLEPAVLAALLTRMHREMPQYATLVAASPQGFVHASSVPAELPIDVRDRS 131

Query: 240 ----VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN 295
               V +   +   +  + K+ +   L      L        I         +     + 
Sbjct: 132 WFTRVMAAKSFVVDEFIISKSSRTASLPFALPVLDADGRVRVILGAALKLSYFEELFADL 191

Query: 296 SKESF---------EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN---LFY 343
           +             + L H +    +A       L P ++            G    + Y
Sbjct: 192 ATRQGVRIFLLDHHQTLLHASGSPATAVGKPASELLPASLTAASPGLHEVREGEAKPMLY 251

Query: 344 ANPS---------FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI-------KPVMLY 387
                        F L+      D +  +     +  +  L+               +L 
Sbjct: 252 VVERVVIGQDDNLFTLVVGLPKADLLAQSRRQLVINLSLLLALMLGSSLVLFGYGRRVLT 311

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
              +T I  +AR+          L+     F    Q  + M     + + +  +   +++
Sbjct: 312 APLQTLIRTTARVAGGDLTARTGLSYQATEFGALAQAIDAMTAALEQEDRLHQQHA-KEL 370

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
                +  +++E  +D I + + EG I++ N A  +  GY  +++L         Q TP 
Sbjct: 371 RESEHRFRTLVEHAADAIYLADMEGRIINVNVAAEQQTGYSRKELLGMGIIDVDAQTTPQ 430

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWK 565
            +  +L EI    +       T+   K   LL + + I  LP            DISE +
Sbjct: 431 TLADFLAEIPQRHVATV---DTVHRCKNGSLLPVEVRIAYLPSEHQPLVLGVARDISERR 487

Query: 566 QEKNKLSHAKKIAEK 580
           +    L  +  +  +
Sbjct: 488 RADEALRTSNDLLSR 502


>gi|229541285|ref|ZP_04430345.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           coagulans 36D1]
 gi|229325705|gb|EEN91380.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           coagulans 36D1]
          Length = 534

 Score =  306 bits (785), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 96/520 (18%), Positives = 186/520 (35%), Gaps = 52/520 (10%)

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIE--- 361
                      D  +      ++      F   +G +  AN + L + +    + +    
Sbjct: 36  MSQKKRGLVLRDHEQLYRTLFLEAMDAIVFWDQNGQILLANEAALKIFECTMEEFVGKKL 95

Query: 362 ------IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
                   GG     D        A + ++    +            I            
Sbjct: 96  SDFVYVENGGNCRKFDRLNQIPA-AREELLFKMPNGQLKHLEFTSRYISAEN-------- 146

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
                            I          ++ +     +   + E + DG+ + N +  I+
Sbjct: 147 -------------YHMTIFRNVSSRYKMEQTLRDSEERFRKVFEGSIDGMVLWNWDLKIV 193

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
             N A +  F    ED + K     L  N   +   +L  +  L    T + +   S   
Sbjct: 194 DINPAAANYFDCSREDAIGKRIQNLLLTNDEKMQKDFLRHLFQLKENGTADYLFTASKAN 253

Query: 536 EKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
           E      I  K    S+     + DI+E +  + +L  +  +         +  A ++HE
Sbjct: 254 ETKY-YEITSKGNLTSNMNLTVIRDITERRAMQEQLRKSDTLNIV-----GELAAGIAHE 307

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           IR P+TA+ GF ++++N     +    +  Y N I      +  I+ D L ++K ++   
Sbjct: 308 IRNPMTALKGFIQLLQN----SMKEEEHSLYFNVITSELARIEAIITDFLVLAKPQA--- 360

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715
            + F+   + + + + I L+   A    I I   F   +P +  +   +KQ+ +NI+ NA
Sbjct: 361 -IQFQNHDVRKIMRDTIGLLNAQALMHNIQISCHFDEGLPDVYCEGNQIKQVFINIIKNA 419

Query: 716 IHFTPSGGQIIISTTHT-SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           I   P GG+I I+  +      V   +RD G G+ + ++EK  +PF         +  GT
Sbjct: 420 IEVMPDGGKIDIAICYEKEKGLVHTSIRDEGEGIPDDKIEKLGEPFYTT------KERGT 473

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           GLGL ++  ++  + G   + S   +GT   I  P++  +
Sbjct: 474 GLGLMISYKIIKEHKGFIQVQSKVREGTTFHIFLPVHQEA 513


>gi|119944598|ref|YP_942278.1| sensor histidine kinase PAS domain-containing protein [Psychromonas
           ingrahamii 37]
 gi|119863202|gb|ABM02679.1| sensor histidine kinase, PAS domain [Psychromonas ingrahamii 37]
          Length = 599

 Score =  306 bits (785), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 79/368 (21%), Positives = 157/368 (42%), Gaps = 22/368 (5%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           ++E E  +L  I     +G+  IN    I+  N+  +++F       + +P    +    
Sbjct: 252 QIETERNRLAIIFAGMVEGVIYINEHLQIIHMNQVAAQMFNLSNTSSINQPLAEQIP--- 308

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII--KKLPFSSCYSLTMHDISE 563
              +   +   ++       +       K  +++ + +      L  S    + ++DISE
Sbjct: 309 VPEITAAVQAAIANQGVVKTKIQNNDHAKNAEVIDIYVAALSNDLGESVGVVVVLNDISE 368

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
               +                + DF+A  SHE++TP+T I+G +E I + +  P      
Sbjct: 369 LAYLE--------------RVRRDFVANASHELKTPITVILGLAETILDYKDMPEN--MR 412

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
             +   I      +  +V DL+ IS++E+ +  +  E V L  +V  A+S V     EK+
Sbjct: 413 TRFMGDIQTQTLRLSSLVTDLMSISRLETTQNGVMTETVDLTASVKNALSNVDNICREKK 472

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
           I +          I  D   + Q+  N++ NAI +TPS G + ++       +  + V+D
Sbjct: 473 ITLSNRLPKGEMLINGDKEEINQLIDNLIGNAIKYTPSLGHVSVTLKALDE-QAQIIVKD 531

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TG+G++    ++  + F ++  ++     GTGLGL + K +V+ + G   + S    G+ 
Sbjct: 532 TGIGISLSHQQRIFERFYRVDKARSRDLGGTGLGLSIVKNIVEKHKGTISVSSIENHGST 591

Query: 804 IEIIFPLY 811
             ++ PL 
Sbjct: 592 FTLLLPLS 599


>gi|89896828|ref|YP_520315.1| hypothetical protein DSY4082 [Desulfitobacterium hafniense Y51]
 gi|89336276|dbj|BAE85871.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 560

 Score =  306 bits (785), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 74/248 (29%), Positives = 140/248 (56%), Gaps = 3/248 (1%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           + + ++++L  A     + +++KS+FLA +SHE+RTPLT+++ F++++       L   R
Sbjct: 301 DLRIKQDELEAANIKLNEINTYKSEFLAIMSHELRTPLTSVMAFTDLLLQDLPKELKQER 360

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                 YI  +   +L ++N++LD++KIE+G++ L  E V + + +    S++   A +K
Sbjct: 361 Q--NLKYIKANSQNLLKLINNILDLAKIEAGRLELKLEYVDMADVMGAIDSVIAPLAKKK 418

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS-NEEVILRV 741
            I    S    +  + AD   ++++  N++ NAI FTP  G++ I   +   +  +++RV
Sbjct: 419 GINWEISLDPEVSLLRADPEKLRRVIENLVGNAIKFTPPEGRVEIQVKNAPRDNWLMIRV 478

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            DTG+G+   E E+  + F QI +S   +  GTGLGL LAK +V  + G+ ++ S   KG
Sbjct: 479 IDTGIGIPPEEQEEIFERFTQIDSSNSRKYGGTGLGLALAKELVTLHKGELWVESELNKG 538

Query: 802 TLIEIIFP 809
           +   ++ P
Sbjct: 539 STFVVLLP 546


>gi|239904905|ref|YP_002951643.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239794768|dbj|BAH73757.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 823

 Score =  306 bits (784), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 99/495 (20%), Positives = 196/495 (39%), Gaps = 36/495 (7%)

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
           +   P      G +         + +      I     +  +     +     +  +   
Sbjct: 130 QVTAPILAGEAGQVSVGMDKAG-IWRVMREAVIRQEVLMLAMFAVAVVIFYALVSGIARP 188

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
            +     A   R H        +         +A           +           R++
Sbjct: 189 LAALAEYAVKIRDHDFSATPPPASDDEVGVLARAMGSMAGQLSVLVSNLKQAVADTTREL 248

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
              +  + +I++  +DG+ +++  G     N A+  +FG    D   +            
Sbjct: 249 NDSLAHIQAIIDNLADGLLVVDDAGRATLHNPALLAMFGLTGTDPAGRWVRDAFPP---- 304

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQE 567
                L      D      ++ L      K+++    +      +   L + D++  K+ 
Sbjct: 305 -AMAALAASCLSDKACPETEVALSGGGTGKVVATSFRL-PGQARTAVILLVRDVTVEKEV 362

Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG------PLGNP 621
                            K++F++ VSHE+RTPLT+++GF+++I+ +         P G+ 
Sbjct: 363 --------------DRMKTEFISTVSHELRTPLTSVLGFAKIIRRKFLELVVPALPPGDA 408

Query: 622 RY-------IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
           R         E  + I   G  + ++V+D+LDI+K+ESG+     EPVSL      A+  
Sbjct: 409 RVARGAGQIRENLDIIVAEGERLTELVDDVLDIAKMESGRCEWDMEPVSLAAVADHAVKA 468

Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
               A  K + +    A+++P ++AD   + Q+ LN++ NA+ FT SG  + +S     +
Sbjct: 469 AAPLAARKGLALTADIASDLPAVMADRDRLVQVLLNLIGNAVKFTTSG-WVRLS-AVAVD 526

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
            EV + V D+G G+   +LE   + F Q  ++   + +GTGLGLP+ + +V+ + G+ + 
Sbjct: 527 GEVRVAVADSGAGIAAKDLETIFEKFKQAGDTLTEKPKGTGLGLPICRQIVERHGGRIWA 586

Query: 795 FSTPAKGTLIEIIFP 809
            S P +G++   I P
Sbjct: 587 ESVPGQGSVFRFILP 601


>gi|315918906|ref|ZP_07915146.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313692781|gb|EFS29616.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 873

 Score =  306 bits (784), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 100/479 (20%), Positives = 176/479 (36%), Gaps = 28/479 (5%)

Query: 338 HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397
            G + +AN  FL        +DI      +       +    A                 
Sbjct: 267 DGTIIFANRRFLHNHGIPESEDISQLKIYN---VTADMPTQEAWDERCKDVIHGGSSNFV 323

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
           A   +       +   T       +             +  +    + +++     + + 
Sbjct: 324 AHHPSKINKGILAYEGTMYNVTNDSGEESYWSFA---HDISERIRYEAQIKRLNQIMDTT 380

Query: 458 LEATSDGIAI--INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           +     GI +  IN +   +  NR           D + K    F              +
Sbjct: 381 INNLPAGIVVKEINNDFRYIYRNREAYNR-DLYKNDPVGKNDFDFYPPIVAEKKRQEDIQ 439

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNKL 571
           + +      +     G  +   L+ L     ++               D++E +  K +L
Sbjct: 440 VATSGK--GMHWTVEGKDRNGNLIILDKRKIRVDGDELSSPIIVSIEWDVTELEMMKREL 497

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
             +K+ AE   S KS FLA +SHEIRTPL AI+GFS +I               Y N ++
Sbjct: 498 LSSKEKAEMSDSLKSAFLANMSHEIRTPLNAIVGFSHLIAESD----DAEERKTYYNIVN 553

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
            +   +L ++N++LD+SKIESG +   F P SL     E          +  + +    +
Sbjct: 554 ANNERLLQLINEILDLSKIESGTIEFSFGPASLHNLCREVYDAHIFRTPQ-GVSLVYEPS 612

Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-SNEEVILRVRDTGVGMTN 750
           +    I  D   V Q+  N++ NA+ FT  G    IS  +   + +++  V DTG G+  
Sbjct: 613 DESLMIETDKNRVFQVISNLIGNAVKFTKEGS---ISYGYKLVDNQIVFHVTDTGTGIEP 669

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            ++ +  + F ++ N      +GTGLGL + K++V+   GK  + S  +KGT      P
Sbjct: 670 EKVGRVFERFAKLNN----HAQGTGLGLSICKSIVERLGGKISVSSEFSKGTTFTFTLP 724



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/281 (11%), Positives = 80/281 (28%), Gaps = 18/281 (6%)

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDI 360
           +Y       ++    ++             I  + Y+       N +      Y  V   
Sbjct: 108 QYRDITQRSNVKRRLEQANLTLRAIQKVAQIGQWAYNT------NKNVFHYLGYTGVLCE 161

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
           E    L+       + + +    +     +   +   +  + ++ N E    M    + +
Sbjct: 162 ESVQNLAIEKYVELIVEEDRQSFIEWCHVNEKELNMESISYRVRLNGE-IFYMRIQTYLR 220

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
                 +    G      D     +    ++  L   +    + I     +G I+  NR 
Sbjct: 221 KECSDGSFNIEGYIQNITDI----QHRRNDINTLTHAINNAKESIFAARPDGTIIFANRR 276

Query: 481 VSKLFGYPVEDILRK--PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
                G P  + + +   + V  +  T    +    +++       +        K   +
Sbjct: 277 FLHNHGIPESEDISQLKIYNVTADMPTQEAWDERCKDVIHGGSSNFVAHHPSKINK--GI 334

Query: 539 LSLRIIIKKLPFSSC---YSLTMHDISEWKQEKNKLSHAKK 576
           L+    +  +   S    Y    HDISE  + + ++    +
Sbjct: 335 LAYEGTMYNVTNDSGEESYWSFAHDISERIRYEAQIKRLNQ 375


>gi|260170560|ref|ZP_05756972.1| two-component system sensor histidine kinase/response regulator,
           hybrid ('one component system') [Bacteroides sp. D2]
          Length = 808

 Score =  306 bits (784), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 100/479 (20%), Positives = 176/479 (36%), Gaps = 28/479 (5%)

Query: 338 HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397
            G + +AN  FL        +DI      +       +    A                 
Sbjct: 202 DGTIIFANRRFLHNHGIPESEDISQLKIYN---VTADMPTQEAWDERCKDVIHGGSSNFV 258

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
           A   +       +   T       +             +  +    + +++     + + 
Sbjct: 259 AHHPSKINKGILAYEGTMYNVTNDSGEESYWSFA---HDISERIRYEAQIKRLNQIMDTT 315

Query: 458 LEATSDGIAI--INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           +     GI +  IN +   +  NR           D + K    F              +
Sbjct: 316 INNLPAGIVVKEINNDFRYIYRNREAYNR-DLYKNDPVGKNDFDFYPPIVAEKKRQEDIQ 374

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNKL 571
           + +      +     G  +   L+ L     ++               D++E +  K +L
Sbjct: 375 VATSGK--GMHWTVEGKDRNGNLIILDKRKIRVDGDELSSPIIVSIEWDVTELEMMKREL 432

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
             +K+ AE   S KS FLA +SHEIRTPL AI+GFS +I               Y N ++
Sbjct: 433 LSSKEKAEMSDSLKSAFLANMSHEIRTPLNAIVGFSHLIAESD----DAEERKTYYNIVN 488

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
            +   +L ++N++LD+SKIESG +   F P SL     E          +  + +    +
Sbjct: 489 ANNERLLQLINEILDLSKIESGTIEFSFGPASLHNLCREVYDAHIFRTPQ-GVSLVYEPS 547

Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-SNEEVILRVRDTGVGMTN 750
           +    I  D   V Q+  N++ NA+ FT  G    IS  +   + +++  V DTG G+  
Sbjct: 548 DESLMIETDKNRVFQVISNLIGNAVKFTKEGS---ISYGYKLVDNQIVFHVTDTGTGIEP 604

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            ++ +  + F ++ N      +GTGLGL + K++V+   GK  + S  +KGT      P
Sbjct: 605 EKVGRVFERFAKLNN----HAQGTGLGLSICKSIVERLGGKISVSSEFSKGTTFTFTLP 659



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/281 (11%), Positives = 80/281 (28%), Gaps = 18/281 (6%)

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDI 360
           +Y       ++    ++             I  + Y+       N +      Y  V   
Sbjct: 43  QYRDITQRSNVKRRLEQANLTLRAIQKVAQIGQWAYNT------NKNVFHYLGYTGVLCE 96

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
           E    L+       + + +    +     +   +   +  + ++ N E    M    + +
Sbjct: 97  ESVQNLAIEKYVELIVEEDRQSFIEWCHVNEKELNMESISYRVRLNGE-IFYMRIQTYLR 155

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
                 +    G      D     +    ++  L   +    + I     +G I+  NR 
Sbjct: 156 KECSDGSFNIEGYIQNITDI----QHRRNDINTLTHAINNAKESIFAARPDGTIIFANRR 211

Query: 481 VSKLFGYPVEDILRK--PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
                G P  + + +   + V  +  T    +    +++       +        K   +
Sbjct: 212 FLHNHGIPESEDISQLKIYNVTADMPTQEAWDERCKDVIHGGSSNFVAHHPSKINK--GI 269

Query: 539 LSLRIIIKKLPFSSC---YSLTMHDISEWKQEKNKLSHAKK 576
           L+    +  +   S    Y    HDISE  + + ++    +
Sbjct: 270 LAYEGTMYNVTNDSGEESYWSFAHDISERIRYEAQIKRLNQ 310


>gi|307310979|ref|ZP_07590624.1| histidine kinase [Sinorhizobium meliloti BL225C]
 gi|307322010|ref|ZP_07601389.1| histidine kinase [Sinorhizobium meliloti AK83]
 gi|306892348|gb|EFN23155.1| histidine kinase [Sinorhizobium meliloti AK83]
 gi|306899659|gb|EFN30286.1| histidine kinase [Sinorhizobium meliloti BL225C]
          Length = 826

 Score =  306 bits (784), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 125/718 (17%), Positives = 253/718 (35%), Gaps = 37/718 (5%)

Query: 109 YAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALP- 167
              + +G    +             G  +K Q+    +  +  +        + L     
Sbjct: 118 ERPEFLGQLPAETGAPQDDRDFLAFGRWIKPQSAGQLEKAIEALRAQAQSFDLVLETQRN 177

Query: 168 -IYSRNREFSGFRGFG---IVHVNRVDNDPRALGK----RLDKKFSHLHEIKKGHSSVEK 219
            +       SG R F     ++  R +     L +         F  L +     +    
Sbjct: 178 EVLEAQGRVSGGRAFVRFIALNNLRAELAELKLERDQLHASLSTFRTLLDAVDLPAWQRG 237

Query: 220 EKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTIN 279
               +    +   +       S+              E+   +++ ++  P ++   T+ 
Sbjct: 238 GDGRLEWVNAAYANAVETQSASTAVAEERELLATTARERIRAVSTLQT--PFRDKVSTVV 295

Query: 280 LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH- 338
               T        +  +  +   +      ++            ET++    P  ++   
Sbjct: 296 RGNRTFFDVVDA-RTPAGSAGIAIDVSGIEAVREELARTLKSHAETLEHLATPVAIFDGN 354

Query: 339 GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398
             L + N +F  L     +  +E       +LD  +       +               A
Sbjct: 355 QRLQFYNQAFQRLWDL-DMGFLERKPDNGEVLDRLRAGGKLPEQLNWKQWKTSALSVYQA 413

Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI- 457
                    +    +  +P  +  +        G      +    +  +E     L  + 
Sbjct: 414 I--------DTQSDLWHLPNGQTLRVFATARPQGGATWVFENLTERVDLETRYNTLVQVQ 465

Query: 458 ---LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
              ++  ++G+A+   +G I  +N A   ++G    +         +EQ   +  +    
Sbjct: 466 GETIDHLAEGVAVFGPDGRIRLSNPAFRAIWGISETEAQPGTHIRAIEQACLASYDQPDG 525

Query: 515 EILSLDLRQTLEKIT---LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571
                 +  + +       G  +    L L   +  LP +    LT  +I++  + +  L
Sbjct: 526 WKRFAHIITSFDDERPSSRGILELRTGLILDYAVIPLPNAQ-TMLTFVNITDSVRVERAL 584

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
           +   +   K  + K+DF+  VS+E+R+PLT IIGF++++K   FG L N R  EY ++I 
Sbjct: 585 TEKNEALRKADALKNDFVHHVSYELRSPLTNIIGFADLLKTPVFGEL-NERQAEYVDHIA 643

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
            S +L+L IVND+LD++ +++G + L    V+L + + +    +     E  + +RT   
Sbjct: 644 TSSSLLLTIVNDILDLATVDAGIVELELSEVNLIDLIDDVTQQMGDRLVESGVSLRTDAP 703

Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751
           +N+ RI AD + +KQI + +L+NA +F P G  I +        +    V DTG G+   
Sbjct: 704 DNLGRITADQQRLKQIFIKLLTNAANFAPDGSTIELKC-WREGSDFAFSVTDTGPGIPQD 762

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            L      F         +  G GLGL + ++ V  + G   I S   +GT +    P
Sbjct: 763 VLNTVFNRFE-----SYGQRGGAGLGLSIVESFVSLHHGNVSIRSKEGEGTAVTCRIP 815



 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 38/382 (9%), Positives = 89/382 (23%), Gaps = 36/382 (9%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK 146
           W     G L+ ++      +   +         ++               +    T +  
Sbjct: 234 WQRGGDGRLEWVNAAYANAVETQSASTAVAEERELLAT----TARERIRAVSTLQTPFRD 289

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                + G   +  +           R  +G  G  I          R    R  K  + 
Sbjct: 290 KVSTVVRGNRTFFDVV--------DARTPAGSAGIAI--DVSGIEAVREELARTLKSHAE 339

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
             E      ++      +          R+ +      E      +VL   +      E+
Sbjct: 340 TLEHLATPVAIFDGNQRLQFYNQAFQ--RLWDLDMGFLERKPDNGEVLDRLRAGGKLPEQ 397

Query: 267 SSL-----PEQEDFHTINLNQYTKKQ-------YFGTLQNNSKESFEYLSHRNHPSLSAY 314
            +           +  I+                F T +     ++ + +      L   
Sbjct: 398 LNWKQWKTSALSVYQAIDTQSDLWHLPNGQTLRVFATARPQGGATWVFENLTERVDLETR 457

Query: 315 FDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
           ++    +  ET+D       V+   G +  +NP+F  +      +     G     ++  
Sbjct: 458 YNTLVQVQGETIDHLAEGVAVFGPDGRIRLSNPAFRAIWGISETEA--QPGTHIRAIEQA 515

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
            L+  +       +    T                  L + +      N           
Sbjct: 516 CLASYDQPDGWKRFAHIITSFDDERPSSRGILELRTGLILDYAVIPLPNAQ-----TMLT 570

Query: 434 EPEDVDTRINKRKMEIEVMQLC 455
                D+   +R +  +   L 
Sbjct: 571 FVNITDSVRVERALTEKNEALR 592


>gi|325262786|ref|ZP_08129522.1| sensory box histidine kinase/response regulator [Clostridium sp.
           D5]
 gi|324031880|gb|EGB93159.1| sensory box histidine kinase/response regulator [Clostridium sp.
           D5]
          Length = 723

 Score =  306 bits (784), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 90/385 (23%), Positives = 173/385 (44%), Gaps = 21/385 (5%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIIN-REGI-ILSTNRAVSKLFGYPVEDILR--KPFTV 499
           + K+E +  +  +IL     G A ++ R+   +L       K+ GY  ++          
Sbjct: 156 EYKLEKKDREREAILRTIPGGFARVDARDMRTVLWYGGGFLKMIGYTRDEFENILHSKCT 215

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYS 555
           ++  +        +           +E   +      K+L++         S      + 
Sbjct: 216 YVHPDDIERAAKVMEISRETGEDTAVEGRIITRDGTVKILTMTYSYVSAENSWDGIESFY 275

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEK----ESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
               D+++ ++E+ + S A + A +     +S K++FL+ +SH+IRTP+ AI+G + + K
Sbjct: 276 SVGIDVTKEREEQERQSKALEEAYQTARVANSAKTNFLSSMSHDIRTPMNAIMGMTTIAK 335

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
                     +     + ID S   +L+++N++LD+SKIESGK++L  E V+L E +   
Sbjct: 336 ANLD---SKEKVCSCLDKIDTSSQHLLNLINEVLDMSKIESGKIDLTLEEVNLHELLKSV 392

Query: 672 ISLVQLYANEKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
             + +   ++K    R+S A      ++AD   +KQ+ LN+LSNAI +TP GG+I +   
Sbjct: 393 SEICRPLISQKHQEFRSSIAQVRHKEVIADGERLKQVMLNLLSNAIKYTPEGGRISLRIN 452

Query: 731 H-----TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
                     +      DTG+G++        +PF +  + +  + +GTGLG+ + + +V
Sbjct: 453 ELYSPNPKKSQYEFSCIDTGIGISEDFRPYVFEPFWRAEDPRISKSQGTGLGMAITENIV 512

Query: 786 DANMGKFYIFSTPAKGTLIEIIFPL 810
               G   + S    G+      PL
Sbjct: 513 RMMNGTIRVESKTGAGSKFTASIPL 537


>gi|167644588|ref|YP_001682251.1| PAS/PAC sensor hybrid histidine kinase [Caulobacter sp. K31]
 gi|167347018|gb|ABZ69753.1| PAS/PAC sensor hybrid histidine kinase [Caulobacter sp. K31]
          Length = 645

 Score =  306 bits (784), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 101/493 (20%), Positives = 186/493 (37%), Gaps = 27/493 (5%)

Query: 324 ETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
           + ++      ++    G +   N     L   ++VD        +     P+ S  +  +
Sbjct: 16  DILNASQDCIWILGLDGAVEQMNHRAETLFPAQTVD------RANWRRIWPEESRFSLDR 69

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
            +             A L   + +       T  P    +     +       +      
Sbjct: 70  ALR-AALTGQVAKFRAFLGHAR-DSRTYCDTTIAPVRDRDGL--VIRLLATARDVTREVE 125

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
            +         L ++++     + + N  +G  +  NRA    FG   ++ L +     L
Sbjct: 126 TQS-------FLRTVIQMLPSPLTVKNVGDGRYVLVNRAAEDAFGLVADEALGRTAAEVL 178

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKIT--LGSTKEEKLLSLRIIIKKLPFSSCYSLTMH 559
           + +    +      +LS    Q  E              L+  +                
Sbjct: 179 DPDRAGRIAMAEALVLSTGEMQMSEDRVGEDADAATRHFLTKVLATYDDMGPRHLITLST 238

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           D++  +     L  A + AE+ S  KS FLA +SHEIRTPL  I+  ++++      P  
Sbjct: 239 DVTAQRAAATSLRLALEAAEQASLAKSTFLANMSHEIRTPLNGIVAGADILARSELTP-- 296

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
             R  E  + I  SG  +  +++++LD+ +IE+G++ +      L +      +L  L+A
Sbjct: 297 --RVRELVDIIQTSGKSLERLLSEVLDLVRIEAGQVTIETGVFHLGDLTRSVAALCALHA 354

Query: 680 NEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738
            EK + + T  A      ++ D   V+Q+  N++SNA+ FT  G Q+ +     ++ +  
Sbjct: 355 GEKGVALETRIAPAADIAVIGDGARVRQVLTNLVSNAVKFTDQG-QVAVEVDLGADGQTR 413

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           + VRDTGVG    E  +    F Q   S   R  GTGLGL +++ +V+   G     S P
Sbjct: 414 ISVRDTGVGFDPAEKARIFGRFQQADASFTRRFGGTGLGLTISRELVELMGGTLSCDSRP 473

Query: 799 AKGTLIEIIFPLY 811
             G+      PL 
Sbjct: 474 GAGSTFWFDLPLA 486



 Score = 48.1 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 38/426 (8%), Positives = 86/426 (20%), Gaps = 43/426 (10%)

Query: 65  TNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI 124
           T  +++++             T      G    ++       G  A + +G    +V D 
Sbjct: 121 TREVETQSFLRTVIQMLPSPLTVKNVGDGRYVLVNRAAEDAFGLVADEALGRTAAEVLDP 180

Query: 125 LHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSR--NREFSGFRGFG 182
                      L+               +            L  Y     R         
Sbjct: 181 DRAGRIAMAEALVLSTGEMQMSEDRVGEDADAATRHFLTKVLATYDDMGPRHLITLSTDV 240

Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS 242
                   +   AL        +    +      +      I +         +  +V  
Sbjct: 241 TAQRAAATSLRLALEAAEQASLAKSTFLANMSHEIRTPLNGIVAGADILARSELTPRVRE 300

Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLP----EQEDFHTINLNQYTKKQYFGTLQNNSKE 298
           L +        L+     +L            E   FH  +L +                
Sbjct: 301 LVDIIQTSGKSLERLLSEVLDLVRIEAGQVTIETGVFHLGDLTRSVAALCALHAGEKGVA 360

Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETV-------DKCPIPFFVYSH------------- 338
               ++     ++         +    V       D+  +   V                
Sbjct: 361 LETRIAPAADIAVIGDGARVRQVLTNLVSNAVKFTDQGQVAVEVDLGADGQTRISVRDTG 420

Query: 339 ------------GNLFYANPSFLLLTKYKSVD-----DIEIAGGLSTLLDAPKLSDNNAI 381
                       G    A+ SF        +      ++    G +   D+   + +   
Sbjct: 421 VGFDPAEKARIFGRFQQADASFTRRFGGTGLGLTISRELVELMGGTLSCDSRPGAGSTFW 480

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
             + L   D +   A+      +  +     +         +  E M     E    +  
Sbjct: 481 FDLPLAAVDGSTANAAIDDDPAEPPQGVPRILVADDHPTNRKIVELMLAEVAEIFTAENG 540

Query: 442 INKRKM 447
                +
Sbjct: 541 QEAVDL 546



 Score = 44.6 bits (104), Expect = 0.062,   Method: Composition-based stats.
 Identities = 12/247 (4%), Positives = 48/247 (19%), Gaps = 9/247 (3%)

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
           +    +    +      +         L     V          ++   +    L  +  
Sbjct: 17  ILNASQDCIWILGLDGAVEQMNHRAETLFPAQTVDRANWRRIWPEESRFSLDRALRAALT 76

Query: 267 SSLP-EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
             +   +        ++         +++        L+     +             + 
Sbjct: 77  GQVAKFRAFLGHARDSRTYCDTTIAPVRDRDGLVIRLLATARDVTREVETQSFLRTVIQM 136

Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
           +   P+       G     N +        + + +           A  L  + A +  M
Sbjct: 137 LPS-PLTVKNVGDGRYVLVNRAAEDAFGLVADEALGRT-------AAEVLDPDRAGRIAM 188

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
                 +          +  + + +                      +  +    R    
Sbjct: 189 AEALVLSTGEMQMSEDRVGEDADAATRHFLTKVLATYDDMGPRHLITLSTDVTAQRAAAT 248

Query: 446 KMEIEVM 452
            + + + 
Sbjct: 249 SLRLALE 255


>gi|16330590|ref|NP_441318.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
 gi|1653081|dbj|BAA17998.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
          Length = 950

 Score =  306 bits (784), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 122/678 (17%), Positives = 230/678 (33%), Gaps = 57/678 (8%)

Query: 181 FGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV 240
           F  +          AL   ++   S L + ++  +  E +  D    +     +R ++  
Sbjct: 9   FSPLRSTARFWVLVALLTSMELSASQLRDTEQAVAIEESKCTDCVEGR-GTGIVRGESFA 67

Query: 241 SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG----TLQNNS 296
              T     K + +K     +                + L    KK          Q   
Sbjct: 68  QVETVPTEAKVEQIKPMIERISPHLGLVGFGLAFIGVLWLTYLLKKDRQTKAQLAFQARR 127

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-----NLFYANPS---- 347
            +    L           F +      E + K  I F  + +       L   + +    
Sbjct: 128 SDVLLELPQYADRLSEVEFLQRGQEFAEELTKSKIAFIHFVNDDEQTIELVAWSRATLAN 187

Query: 348 FLLLTKYKSVDDIEIAGGLSTL-LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
           +  +         E       L L  P L ++ A         +     A      +  +
Sbjct: 188 YCRVVAASHYPVEEAGIWADALRLRRPVLINDYATHQGKKGLPEGHAYLARLISVPVIDD 247

Query: 407 RENSLA--MTFIPFEKANQFPENMPQNG-IEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
            +  +   +        +Q  E +            +R   +K+     +          
Sbjct: 248 GKVVMLTGVGNKDVFYTDQDVETVQLISNEIWRIARSRRLVKKLTESENRYRLAQAIAKI 307

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEILSLDL 521
           G   ++    +L  +  V  LF    +D     + F   +      +++      L    
Sbjct: 308 GNWELDYATNVLFWSPEVFNLFEIAPQDFAGTYEAFLNLIHPGDRELVDEAYQCHLQKYQ 367

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS--LTMHDISEWKQEKNKLSHAKKIAE 579
              +    L      K +  +        +       T+ D++E ++ +  L H  +  E
Sbjct: 368 PYDIVHRLLMPDGRIKYVQEQCNTVFDKNNLPLLSRGTIQDVTELQEAQISLEHLNEKLE 427

Query: 580 K-------------------------ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
           +                          +  KS+FLA +SHEIRTP+ AIIG SE++    
Sbjct: 428 QRIQERTQELENSQESLLEAKLVAEGATKAKSEFLANMSHEIRTPMNAIIGMSELVLQTD 487

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                  +   Y   +  +G L+L I+N++LD SK+E+GK+ L  +P S++E +    S+
Sbjct: 488 LTS----QQRNYLQKVQYAGELLLGIINNILDFSKMEAGKLELEQKPFSVEEVMGNLHSI 543

Query: 675 VQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-- 731
           + + A  K + +       IP IL  D   + QI +N+ +NA+ FT  G +I I      
Sbjct: 544 LGIQAEAKGLTLNFHLDPRIPPILVGDRLRLSQILINLGNNAVKFTNQG-EITIRGQLLK 602

Query: 732 --TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
                 ++   V DTG+G+T  +  K  + F Q   S   +  GTGLGL ++K++ +   
Sbjct: 603 TENEQTKLQFSVTDTGIGLTPDQQSKLFQWFNQGETSTSRQYGGTGLGLAISKSLTELMG 662

Query: 790 GKFYIFSTPAKGTLIEII 807
           G  ++ S   +G+     
Sbjct: 663 GDIWLESVVGQGSTFHFT 680


>gi|91974766|ref|YP_567425.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisB5]
 gi|91681222|gb|ABE37524.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisB5]
          Length = 1105

 Score =  306 bits (784), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 99/690 (14%), Positives = 212/690 (30%), Gaps = 63/690 (9%)

Query: 170 SRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS 229
            R+REF    GF     +R+ +D  A    LD K      ++          +D      
Sbjct: 275 DRSREF----GFDRGTPSRIQDDFPAFAALLDGKDEAPRVMESSTGQRFGVGWDWVRLAD 330

Query: 230 PPPHLRMKNKVSSLTEYYAHK----------DDVLKTEKYPLLTSEESSLPEQEDFHTIN 279
            P    ++ +  +                    +L      +  +   + P      ++ 
Sbjct: 331 GPRVGVIEMRSYASLTSVPRAVRDATLTGGAAAILVAMLMAVPLARSLTRPLVRITRSVQ 390

Query: 280 LNQYTKKQYFGT-------LQNNSKESFEYLSHRNHPSLSAYFDEGENL---TPETVDKC 329
                +K            L  ++     + ++R   +L+A  +E   +      T+D  
Sbjct: 391 AFARGEKFELTPGGSQEINLLADAFSQMTHEANRKAIALAAEVEERTRIAGVLQNTIDIM 450

Query: 330 PIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388
             P  V    G +   NP+   +    +   I                       ++   
Sbjct: 451 VDPVLVVDARGTVILTNPAACEMFGSLAGISILNTTRSFDRFSPDGKPLTPDKSALLRAF 510

Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
              T       +  I   R +   +T        +  +      +  +   T+  +  + 
Sbjct: 511 LGETIENFEFIVQPIGSARRSY--LTANGRPLRGETGQIQGAVMVYHDITKTKKAEEALR 568

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
                  +I++   D    ++  G I   +     + G+   + + +     L       
Sbjct: 569 RSEQMARAIVDTALDAFVQVDALGTITEWSPHAELVLGWRRSEAIGRNVFQLLIPADQLE 628

Query: 509 MN-HYLTEILS--LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS--LTMHDISE 563
                     S                 ++     + + +  L     +     + +++E
Sbjct: 629 RRTEEFKRFASSLGRDSSGFRVEIEVLHQDGTPTPIEVAMTALYRDGSFVINAFLRNLTE 688

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
               + +L  ++K+              ++H+    LT I G  ++I +   G    P  
Sbjct: 689 QIAFEEQLRQSQKM-----ESIGQLTGGIAHDFNNMLTVITGTIDIISD---GVADQPHL 740

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
              A  I  + +   ++   LL  ++    K  L  +   ++  V+   SL++     ++
Sbjct: 741 ATIAKLISEAADRGAELTRLLLAFAR----KQPLRPDETDVNALVAGLQSLLRPTL-GEQ 795

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT------------- 730
           I I TSF +    I  D   ++   +N+  NA    P+GG++ I T              
Sbjct: 796 IEIETSFDDGAWPIYVDRGQLESALVNLAVNARDAMPNGGKLTIETCNIVVDQELAKRFG 855

Query: 731 -HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
              S   V++ + D+G G+ +    K   PF          G+GTGLGL +    +  + 
Sbjct: 856 NVESGSYVMIAISDSGCGIPDAIRGKVFDPFFTTK----EVGKGTGLGLSMVYGFIKQSG 911

Query: 790 GKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819
           G   ++S    GT   +  P   T +  + 
Sbjct: 912 GHITLYSEVGLGTTFRLYLPRASTENEREA 941



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/405 (9%), Positives = 94/405 (23%), Gaps = 33/405 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIG---MRLCDVSD---ILHIDPNNHIGDLLKRQNT 142
           +DA G +   +    +  G+ A   I          S     L  D +  +   L    T
Sbjct: 457 VDARGTVILTNPAACEMFGSLAGISILNTTRSFDRFSPDGKPLTPDKSALLRAFL--GET 514

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
                 +    G+     +     P+     +  G     + H            +R ++
Sbjct: 515 IENFEFIVQPIGSARRSYLTANGRPLRGETGQIQGA--VMVYHDITKTKKAEEALRRSEQ 572

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL---RMKNKVSSLTEYYAHKDDVLKTEKY 259
               + +              I         +   R    +           D L+    
Sbjct: 573 MARAIVDTALDAFVQVDALGTITEWSPHAELVLGWRRSEAIGRNVFQLLIPADQLERRTE 632

Query: 260 PLLTSEESSLPEQEDFH------TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
                  S   +   F         +      +     L  +               ++ 
Sbjct: 633 EFKRFASSLGRDSSGFRVEIEVLHQDGTPTPIEVAMTALYRDGSFVINAFLRNLTEQIAF 692

Query: 314 YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
                ++   E++ +         +  L     +  +++   +         ++ L+   
Sbjct: 693 EEQLRQSQKMESIGQLTGGIAHDFNNMLTVITGTIDIISDGVADQ--PHLATIAKLISEA 750

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
                   + ++ +   +        ++ +       L     P        E    +G 
Sbjct: 751 ADRGAELTRLLLAFARKQPLRPDETDVNALV----AGLQSLLRPTLGEQIEIETSFDDGA 806

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
            P  VD    +  +    +      +A  +G      +  I + N
Sbjct: 807 WPIYVDRGQLESALVNLAVNAR---DAMPNG-----GKLTIETCN 843



 Score = 45.0 bits (105), Expect = 0.054,   Method: Composition-based stats.
 Identities = 33/254 (12%), Positives = 59/254 (23%), Gaps = 15/254 (5%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI-----DPNNHIGDLLKRQNT 142
            +DA G + E S      +G    + IG  +  +           +        L R ++
Sbjct: 587 QVDALGTITEWSPHAELVLGWRRSEAIGRNVFQLLIPADQLERRTEEFKRFASSLGRDSS 646

Query: 143 -WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
            +  +  +   +GT    PI++A   +Y R+  F        +             ++  
Sbjct: 647 GFRVEIEVLHQDGTP--TPIEVAMTALY-RDGSFV---INAFLRNLTEQIAFEEQLRQSQ 700

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
           K  S                  I                 +       +      E   L
Sbjct: 701 KMESIGQLTGGIAHDFNNMLTVITGTIDIISDGVADQPHLATIAKLISEAADRGAELTRL 760

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
           L +     P + D   +N      +           E          P           L
Sbjct: 761 LLAFARKQPLRPDETDVNALVAGLQSLLRPTLGEQIEIETSFDDGAWPIYVDRGQLESAL 820

Query: 322 TPETV---DKCPIP 332
               V   D  P  
Sbjct: 821 VNLAVNARDAMPNG 834


>gi|330958947|gb|EGH59207.1| PAS protein [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 1186

 Score =  306 bits (784), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 128/668 (19%), Positives = 242/668 (36%), Gaps = 40/668 (5%)

Query: 149 LWPIEGTNLYVPIDLAALPI--YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
            W  +   + V ++ A  P+  +     F G     I          R   K   K+   
Sbjct: 281 RWIAQHPTVRVVVNEAYAPLTFFDAKGNFRG-----ITADLLELVRLRTGLKFDVKRSPS 335

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT-SE 265
           L +++   S  + +                ++++S    Y  +   ++  +     +  E
Sbjct: 336 LTDMQNQVSQGQADMIGALVSSD-----EREDRLSFTRPYIDNSFVLVTRKGQGSPSYLE 390

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
           +             + ++ +++Y   +       F+ L                +     
Sbjct: 391 QMDGKRLAITQGSPMLEWLRRKYPKVVPLEIDNPFQALDMLAVGRTEGAVTSLLSAN--- 447

Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
                   F               L++   S D IE++  L   L +    D  AI    
Sbjct: 448 -YFLSSGIFEERLHMSATIGEEPALISMATSRDAIELSSILDKALASIAPQDLAAINNRW 506

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
              +            + +W+    L    +                +  +       +R
Sbjct: 507 RAYTP----------SSAKWHDYQRLIYQIVIGAGLLLIGLLAWNAWMRQQIRQREAAER 556

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            +  +   + ++++ T   I + +R G++   N +    F    EDI+ K  T  +  N 
Sbjct: 557 ALSDQFEFMSALVDGTPHPIYVRDRNGLLRMCNDSYLTTFSARREDIIGKSATEGVLGNA 616

Query: 506 PSV--MNHYLTEILSLDLRQTLEKITLGSTKEEKLL-SLRIIIKKLPFSSCYSLTMHDIS 562
                       +++ +    L++      ++  +   +      L           DIS
Sbjct: 617 FEAREYAADYQRVMASNTALILDRPMRIGDRQLTIYHWILPFRDSLGEVQGIIGGWIDIS 676

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E +Q   +L  AK+ A+  S  KS FLA +SHEIRTP+ A+IG  E+   +      +  
Sbjct: 677 ERRQLIEELQAAKEQADAASRAKSTFLATMSHEIRTPMNAVIGMLELALKRADHGELD-- 734

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                     S N +LD++ D+LDI++IESG++ L+ E  +L +     + +    A +K
Sbjct: 735 -RPAIEVAYGSANELLDLIGDILDIARIESGRLALNPERANLRQLAESVVRVFDGLARQK 793

Query: 683 RILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-----E 736
            + +     + I   +L D    KQI  N++SNAI FT  G Q+ IS             
Sbjct: 794 DLDLVLELDSRINTDVLIDPLRFKQILSNLVSNAIKFTRCG-QVKISLQAPDTPDPQQLH 852

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           V L V+D+G+G++  +  +  +PF Q  N+ Q+   G GLGL + +++     G   + S
Sbjct: 853 VHLTVQDSGIGISVEDQRRLFEPFAQADNTGQMARTGAGLGLVICRSLCTMMGGSLSLDS 912

Query: 797 TPAKGTLI 804
            P  GT I
Sbjct: 913 EPGIGTRI 920


>gi|291570267|dbj|BAI92539.1| two-component sensor histidine kinase [Arthrospira platensis
           NIES-39]
          Length = 623

 Score =  306 bits (784), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 82/253 (32%), Positives = 131/253 (51%), Gaps = 6/253 (2%)

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN-----QRFGPLG 619
           K+    L  A   A+  +  KS+FLA +SHE+RTPLT +IG S  +       + F  L 
Sbjct: 227 KERTQALHDALLAAQCANRAKSEFLATMSHELRTPLTHVIGISSTLLRLYSQPENFPALP 286

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
             +   Y   I  SG  +L ++ND+LD+S++ESGK  L     SL +   + +  ++ +A
Sbjct: 287 LEKQKHYLQTIHDSGENLLALINDILDLSQVESGKTVLKISQFSLGKMAQQCLHTLRDFA 346

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
            EK + +      +     AD R V+QI LN+LSNAI FTP GG++ ++ +       I 
Sbjct: 347 KEKGVNLYLKMKVDQDLFRADYRRVRQILLNLLSNAIKFTPKGGRVTLTVSRKDK-MAIF 405

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
           +V+DTG+G++  +     + F Q+ +  + +  GTGLGL L K +V+ + G     S   
Sbjct: 406 QVKDTGIGISKEQQSLLFEKFQQLDSPYRRQYGGTGLGLALTKQLVELHGGSIQFESVIG 465

Query: 800 KGTLIEIIFPLYD 812
            GT   +  P+  
Sbjct: 466 LGTKFTVYIPIQP 478


>gi|188584124|ref|YP_001927569.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi
           BJ001]
 gi|179347622|gb|ACB83034.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi
           BJ001]
          Length = 686

 Score =  306 bits (784), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 94/413 (22%), Positives = 175/413 (42%), Gaps = 20/413 (4%)

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
            +     +           + +  E +  +    E +  R+   ++     +   ++EAT
Sbjct: 4   AVSVMGLSIAGAMLALILVSLRRREPVVPDSDIAEALQDRL--WQIAESEERYRVLVEAT 61

Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
           +  +   + +G I   +   + L G    +++    T       P V+    +E     +
Sbjct: 62  TQAVVQRDGQGRITFASEGFAALLGVKPLELIGSTLT-------PQVIERGASEQRPDGV 114

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE 581
           R   E++            + +          +     D++   +    L  AK  AE  
Sbjct: 115 RVVEERLVPVDGVPRWFSFIEMPAAGHTDGPSWLRAGQDVTGRVEAARSLDEAKSRAEAA 174

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
           +  KS FLA VSHE+RTPL  I+G ++++ +       NP    Y      SG  +L +V
Sbjct: 175 NVAKSRFLATVSHELRTPLNGILGMADLLLDTPL----NPEQRTYVEAFRTSGKALLGLV 230

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-AD 700
           + +LD S+IE+G+++L  EP  +   V   + L+   A +K + I    A+++  +   D
Sbjct: 231 DGILDFSRIEAGRLDLAAEPFDVAALVEGVVELLAPRAQDKGLEIALDIADDLTALRVGD 290

Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILRVRDTGVGMTNYELEKAM 757
              V+QI +N+  NAI FT +GG + +S       +    +L + DTG G+    +    
Sbjct: 291 ADRVRQILVNLAGNAIKFTQAGG-VGVSLARAGEGQREGFVLTIEDTGPGIPEERIPILF 349

Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           + F Q  +S     EGTGLGL + + +V+   G     ST  +G++  ++ PL
Sbjct: 350 EEFEQGEDSAS--HEGTGLGLAITRRLVERMNGTIEARSTVGRGSIFRVVLPL 400


>gi|163793563|ref|ZP_02187538.1| Signal transduction histidine kinase [alpha proteobacterium BAL199]
 gi|159181365|gb|EDP65880.1| Signal transduction histidine kinase [alpha proteobacterium BAL199]
          Length = 1217

 Score =  306 bits (784), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 98/633 (15%), Positives = 211/633 (33%), Gaps = 34/633 (5%)

Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD 251
              A  + + +            +     +  +         ++       +    +   
Sbjct: 181 AAGAFRRAVSRDDPDRVAFVDFSTRSWSPEDPLAFGAYAARDMQGGLLGVVVVVVGSEGF 240

Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
           + +      L  + E+ L   ++                          E          
Sbjct: 241 NDIVKGTAGLGETGETYLVGHDNLMRSGSRHLPGGAVLKQA-----VHTESADRAIAGQS 295

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
                 G           P+  F  +   L   + S    + Y ++ +  +   +   L 
Sbjct: 296 GFATITGYRGIEVLSAYQPVVVFDNAWALLAEVDASEEYRSVYTTLQEAALIALVIAGLA 355

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
           +           + +     + +  +     I                  +   E + + 
Sbjct: 356 SLAGILTGRAITLPVVALRDSMLRFTETRRAIAVPGSERRDEIGDAARSFSGLTEEITRY 415

Query: 432 GIEPEDVDTRINK--RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
             E +    ++ +   ++  E  +L   L+    G+ I++R   +  +NR  ++L+G P 
Sbjct: 416 VDELDKEHRQVEQSAARLADEQERLRLTLDQMPGGLVILDRNLNVRLSNRQFTQLYGLPD 475

Query: 490 E-DILRKPFTVF--LEQNTPSVMNHYLTEILSLDLRQTLEKITLGST---KEEKLLSLRI 543
                  P                    + ++  +     K            ++ ++  
Sbjct: 476 ALSEEGTPIEALLRFRAERGDYGPDADDDHIARRIVDYRSKEARRYEDILPGGRVAAVFR 535

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
                       L + D++E K  +++   A        +        +SHEIRTP+  +
Sbjct: 536 SPT---ADGGVVLVVADVTELKDAQSRAEAAAAAKAAFLA-------TMSHEIRTPMNGV 585

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +  +E++       + +         I +S   +L ++ND+LD SKIE+G++ +   P  
Sbjct: 586 MSMAELL----DHTVLDGEQRGMTRVIRQSAEALLTVINDILDFSKIEAGRLPIERVPFE 641

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSG 722
           L E V +   L+   A++  + +    A N+P  +L D   ++QI +N+  NA+ FT +G
Sbjct: 642 LGELVEDVAELLAPRADDHGLDLIIELAPNLPERVLGDPTRLRQILVNLGGNAVKFTEAG 701

Query: 723 GQIIISTTHT-----SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
             + I+             + L V DTG+GMT+ ++ +  +PF Q  +S   R  GTGLG
Sbjct: 702 S-VRIAARPDVPVAGDTLRLCLEVTDTGIGMTDEQMTRLFEPFAQADSSTARRFGGTGLG 760

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           L +   + +   G   + S P  G+   +  PL
Sbjct: 761 LSICLRLAELMDGAITVSSVPDAGSTFRVELPL 793


>gi|156933160|ref|YP_001437076.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Cronobacter sakazakii ATCC BAA-894]
 gi|156531414|gb|ABU76240.1| hypothetical protein ESA_00970 [Cronobacter sakazakii ATCC BAA-894]
          Length = 973

 Score =  306 bits (784), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 99/425 (23%), Positives = 178/425 (41%), Gaps = 33/425 (7%)

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
           +     L  I+    N++ +  +             +    P + D     +++E     
Sbjct: 328 VPVDLVLERIRMLILNAVLLNVLVGIVLFTLARMYERRIFIPAEND----AQRLEEHEQF 383

Query: 454 LCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
              I+ +   GI I+  ++G  + +N            +  ++                 
Sbjct: 384 NRKIVASAPVGICILRTQDGTNIISNELAHNYLNMLTHEDRQR----------------- 426

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572
           LT+I+       ++      T     L +  +  +    +     + D+S   + +  L 
Sbjct: 427 LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSARVKMEESLQ 482

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
              + AE+ S  KS FLA VSHE+RTPL  IIG  ++++ Q      +         +  
Sbjct: 483 EMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTQELPKGVD----RLVTAMHN 538

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
           S +L+L I++D+LD SKIES ++ +     S  E +S   +  Q     K++ +      
Sbjct: 539 SSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMSHITANYQPLVVRKQLGLYCFIEP 598

Query: 693 NIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751
           ++P  +L D   ++Q+  N+LSNAI FT  G  II+    T  + +  RVRDTGVG+   
Sbjct: 599 DVPMSLLGDPMRLQQVISNLLSNAIKFTDIG-CIILHVG-TQGDYLCFRVRDTGVGIPAK 656

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
           E+ +   PF Q+    Q   +GTGLGL + + +++   G   + + P  G+   I  PL+
Sbjct: 657 EVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLINMMDGDISVDTEPGMGSQFTIRIPLW 716

Query: 812 DTSHP 816
               P
Sbjct: 717 QAQLP 721


>gi|91978537|ref|YP_571196.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisB5]
 gi|91684993|gb|ABE41295.1| Hpt sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisB5]
          Length = 876

 Score =  306 bits (784), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 81/379 (21%), Positives = 157/379 (41%), Gaps = 24/379 (6%)

Query: 442 INKRKMEIEVMQLCSIL----EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
             K ++E     +  +L       SD +   + +G ++       ++   P   +     
Sbjct: 228 RAKFELERNTEIISLLLKDFQANASDWLWQTDTQGRLVHVPDRFVEVAHLPANILCGALL 287

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----C 553
           +  +            T    + +R+ ++++ +  T         +  K +   +     
Sbjct: 288 SDVIGMLCSDDGRCAATVAAKMVMREPMDELIVHVTIGGSPRLWSLTAKPMFDYNDEFAG 347

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
           Y     D++E ++ +         AE E+  KS FLA +SHEIRTP+  ++G +  +   
Sbjct: 348 YRGVGRDVTERRRAEQ--------AEAENRAKSGFLAMMSHEIRTPMNGVLGLANSLLET 399

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
           +     +P        I  SG+ +L I+ND+LD+SK+E G++       S    V    S
Sbjct: 400 KL----DPDQQHAVATIRDSGDNLLRILNDILDLSKLEVGRLEFEQVNFSPSVLVDAVRS 455

Query: 674 LVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTH 731
           +V+  A  K + ++      +P  +  D   ++Q+ LN+  NA+ FT  G   I+++   
Sbjct: 456 IVEPNARAKGLALKIDVDPRLPPALTGDAARIRQVLLNLAFNAVKFTDHGSVSIVLTCVK 515

Query: 732 TSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
             +    +   V DTG+G+   ++      F Q   S   R  GTGLGL +++ +V+   
Sbjct: 516 RDDAHATIEWQVTDTGIGIPPEQMGSLFTEFAQGDASINRRFGGTGLGLAISRRIVEQMG 575

Query: 790 GKFYIFSTPAKGTLIEIIF 808
           G   + S P +G+      
Sbjct: 576 GAIDVTSKPGEGSTFRFSL 594



 Score = 58.1 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 50/433 (11%), Positives = 111/433 (25%), Gaps = 26/433 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP---NNHIGDLLKRQNT 142
            W  D  G L  + +   +     A  + G  L DV  +L  D       +   +  +  
Sbjct: 255 LWQTDTQGRLVHVPDRFVEVAHLPANILCGALLSDVIGMLCSDDGRCAATVAAKMVMREP 314

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
                    I G+   +   L A P++  N EF+G+RG G                    
Sbjct: 315 MDELIVHVTIGGSP-RLW-SLTAKPMFDYNDEFAGYRGVG--RDVTERRRAEQAEAENRA 370

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
           K   L  +      +      +    +     ++               D L      +L
Sbjct: 371 KSGFLAMMS---HEIRTPMNGVLGLANSLLETKLDPDQQHAVATIRDSGDNLLRILNDIL 427

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
              +  +   E                  ++ N++     L     P L           
Sbjct: 428 DLSKLEVGRLEFEQVNFSPSVLVDAVRSIVEPNARAKGLALKIDVDPRLPPALTGDAARI 487

Query: 323 PETVDKCP-IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN-A 380
            + +            HG++            + +++      G+    +         A
Sbjct: 488 RQVLLNLAFNAVKFTDHGSVSIVLTCVKRDDAHATIEWQVTDTGIGIPPEQMGSLFTEFA 547

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK--ANQFPENMPQNGIEPEDV 438
                + R         A    I      ++ +T  P E        +    N +  +  
Sbjct: 548 QGDASINRRFGGTGLGLAISRRIVEQMGGAIDVTSKPGEGSTFRFSLDLPWTNALISDHR 607

Query: 439 DTRINKRKMEIEVMQ----LCSIL---EATSDGIAI-----INREGIILSTNRAVSKLFG 486
             R+    +   +      L  ++   +AT+  + +        +  ++S      ++  
Sbjct: 608 LERVGNDDLRTRIAMLGRPLRVLIAEDDATNQLVVMKMLQEFAADAQVVSDGAEALRMLA 667

Query: 487 YPVEDILRKPFTV 499
               D++     +
Sbjct: 668 QEEFDVVLMDVRM 680


>gi|239994497|ref|ZP_04715021.1| putative sensor protein [Alteromonas macleodii ATCC 27126]
          Length = 1023

 Score =  306 bits (784), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 91/381 (23%), Positives = 163/381 (42%), Gaps = 36/381 (9%)

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           +I+  + D I  ++  G++ S N A   LFG P + IL   ++ F        +    + 
Sbjct: 369 AIIAISKDAIFSVDSAGVVKSWNMAAESLFGIPSQLILNHHYSSF----EQLSLLGLESV 424

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKN---- 569
           +     + T     +   KEE  L +         S     ++ + D+++ ++ K+    
Sbjct: 425 LTKGGKQSTFTTPYIDDEKEEHTLLITASTIWGEQSQFSGVAVVIRDVTDERKAKDAIER 484

Query: 570 --------------KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
                         +L  A + A K SS KS F++ +SHE+RTPL  ++G   ++K Q  
Sbjct: 485 VNLKLEEKVVSRTKELVEATQEARKASSVKSSFISNISHEMRTPLNGVVGSLSLLKCQPL 544

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
               N +  +  + ++ S N +  ++ND+LD+SKIE+GK++++ +       +     + 
Sbjct: 545 ----NEKAEQLVSMMEISCNNLSVLINDVLDLSKIEAGKLDINNQYFDPLALIESIAKVF 600

Query: 676 QLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS- 733
            + A  K + +        P  I +D   + QI  N+L+NAI FT  G  I +  + +  
Sbjct: 601 AVKAASKGLQLLVDTTGLPPVEINSDPHRINQILSNLLNNAIKFTEEG-HIKLQASLSDV 659

Query: 734 ---NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
               +++   V DTGVG+      K    F Q   S   +  GTGLGL + K +     G
Sbjct: 660 DAGTQQLHFSVCDTGVGIAQENQPKLFTAFTQADASVATQYGGTGLGLSICKQLSQLMGG 719

Query: 791 KFYIFSTPAKGTLIE--IIFP 809
                S    G+     +  P
Sbjct: 720 DITFNSEVDIGSTFSFFVTLP 740


>gi|56460555|ref|YP_155836.1| hybrid sensor histidine kinase [Idiomarina loihiensis L2TR]
 gi|56179565|gb|AAV82287.1| Hybrid sensor histidine kinase [Idiomarina loihiensis L2TR]
          Length = 644

 Score =  306 bits (784), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 99/504 (19%), Positives = 204/504 (40%), Gaps = 35/504 (6%)

Query: 328 KCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
              +  +  + G  + + + +   L  YK             L++   L         +L
Sbjct: 19  HLSLFIWEDAPGWPVRFVSDNIQDLLGYKKTRLESHEIQYRDLINQDDLPRVMEEVNSLL 78

Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM-PQNGIEPEDVDTRINKR 445
            +   + +         +        +         ++ +      G   +  + +  + 
Sbjct: 79  SKESGSSL----THQDYRVKHAKGHDVWVSDTTVLLRYEDGKNHLYGYLIDVTERKQLQI 134

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR--KPFTVFLEQ 503
            +E+E  +L  IL+AT  G    N +  +   N+  + +FG+ V ++    + ++  L  
Sbjct: 135 ALEMERNRLQLILDATRLGTWEWNPQTGVTIFNQRWASMFGWDVCELETNVESWSSRLHP 194

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-----CYSLTM 558
                +   +   L   +    E +     ++   + +    K +   +      Y+ T+
Sbjct: 195 EDYDDVWQAIKNHL-DGVTPFYESLHRIRHRDGHWVYVLDRGKIIERDNQGRAIRYTGTV 253

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            D++E K+ +         A K +  K+ FLA +SHEIRTPL  I+G + V+++      
Sbjct: 254 TDVTEQKKAE-------LNALKAAHAKNVFLANMSHEIRTPLHGILGIASVLESTDL--- 303

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
            NP   +    I  SG+ +L  +ND+LD+++ E G++ +     S  + +   I L +  
Sbjct: 304 -NPYQQQLLGTIKNSGDYLLTTLNDVLDLTQAEEGQLKVKRGVHSPAKVLGHVIQLFEQP 362

Query: 679 ANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN--- 734
             +K +        +IP   L D   + Q+  N++SNA+ FT  G  I I  +   +   
Sbjct: 363 VKDKGLEFIIDIDADIPERTLMDRARIAQVISNLVSNALKFTERGS-IAIKASWEVDSEK 421

Query: 735 ---EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
               ++I++V+DTGVG+  Y+ ++  + F Q  +       G+GLGL + + +V    G 
Sbjct: 422 QSEGDLIVKVQDTGVGI--YDTQRIWQLFEQEQDGLNRPEGGSGLGLAIVRNLVQLLSGT 479

Query: 792 FYIFSTPAKGTLIEIIFPLYDTSH 815
             + S P +G+   +  P+   S 
Sbjct: 480 IQVDSEPEQGSCFTLCIPMSVQSE 503


>gi|118581010|ref|YP_902260.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
 gi|118503720|gb|ABL00203.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
          Length = 661

 Score =  306 bits (784), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 91/509 (17%), Positives = 175/509 (34%), Gaps = 71/509 (13%)

Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIE----------IAGGLSTLLDAPKLSDNNAIK 382
           F+++ +G L Y N +      Y   +                  + L    +    +  +
Sbjct: 53  FWLFENGRLVYVNEAACRSLGYGHEELAGMTVYDISPHCTVEEYAALWQQTRKQGVDRFE 112

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
            V   R D        + + +++                              +  + + 
Sbjct: 113 AVHQTR-DGRTYPVEIQSNFVEFEGCEYCCCFV-------------------TDISERKR 152

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            + K+ +        +E  S GI +I+ +G I   N    +  GY  +++          
Sbjct: 153 AEEKLLLHEFC----IEKASIGIFLISMDGRIAMANECACRSLGYSSDELCAMTVIDIDP 208

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII--KKLPFSSCYSLTMHD 560
             T   +   + ++ +     ++   T+   ++     + I     +   ++       D
Sbjct: 209 AITVEKIRAIVEQLETNG---SVTHETVHRHRDGTTFPVEITTNNIEFHGATYSYSFAKD 265

Query: 561 ISEWKQEKNKLSHAKKIAEKESS--HKSDFLARVSHEIRTPLTAIIGFSE--VIKNQRFG 616
           IS  KQ + K    +    +             ++H+    LTAIIGF+E   ++ ++  
Sbjct: 266 ISGRKQAEEKRKLLETQLHQMQKLDAVGQLAGGIAHDFNNILTAIIGFAEVMDMRMEQGA 325

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
           PL       +   I  +     D+   LL  S+    K  LH   + L E +     ++ 
Sbjct: 326 PL-----RHHVRQILAAAERAADLTQGLLAFSR----KQVLHVRCLDLREIIDGLKKMLC 376

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT------ 730
               E  I  R   A     ++AD   ++Q+ +N+++NA    P GG + I T       
Sbjct: 377 RLIPE-DIDFRVKTAATEMTVMADRGQIEQVLMNLVTNARDAMPGGGVLTIKTGTGVIDE 435

Query: 731 --HTSNE------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
               +N         ++ V D G GM     EK  +PF         RG+GTGLGL +  
Sbjct: 436 EFVRTNGFGVMGNYALISVTDNGCGMNAETREKVFEPFFTTK----RRGKGTGLGLSIIY 491

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
            +V  + G   + S+P +G    +  PL 
Sbjct: 492 GIVKQHDGFITVDSSPGQGATFRVYLPLA 520



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 42/132 (31%), Gaps = 5/132 (3%)

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
           +    ++     +  +   G ++  N A  +  GY  E++            T       
Sbjct: 40  RFQFAMDRACIQVFWLFENGRLVYVNEAACRSLGYGHEELAGMTVYDISPHCTVEEYAAL 99

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRI--IIKKLPFSSCYSLTMHDISEWKQEKNK 570
             +     + +      +  T++ +   + I     +          + DISE K+ + K
Sbjct: 100 WQQTRKQGVDR---FEAVHQTRDGRTYPVEIQSNFVEFEGCEYCCCFVTDISERKRAEEK 156

Query: 571 LSHAKKIAEKES 582
           L   +   EK S
Sbjct: 157 LLLHEFCIEKAS 168



 Score = 65.4 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 58/607 (9%), Positives = 150/607 (24%), Gaps = 73/607 (12%)

Query: 67  YLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH 126
             D    F F      ++  W +  +G L  ++E   +++G    ++ GM + D+S    
Sbjct: 34  EADDAMRFQFAMDRACIQVFW-LFENGRLVYVNEAACRSLGYGHEELAGMTVYDISPHCT 92

Query: 127 IDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRG----FG 182
           ++    +    ++Q     +      +G    V I             F  F G      
Sbjct: 93  VEEYAALWQQTRKQGVDRFEAVHQTRDGRTYPVEI----------QSNFVEFEGCEYCCC 142

Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS 242
            V                +           G   +  +     + +     L   +    
Sbjct: 143 FVTDISERKRAEEKLLLHEFCIEK---ASIGIFLISMDGRIAMANECACRSLGYSSDELC 199

Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302
                     +   +   ++   E++     +    + +  T      T       +   
Sbjct: 200 AMTVIDIDPAITVEKIRAIVEQLETNGSVTHETVHRHRDGTTFPVEITTNNIEFHGATYS 259

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCP--------IPFFVYSHGNLFYANPSFLLLTKY 354
            S     S     +E   L    + +               +   N+  A   F  +   
Sbjct: 260 YSFAKDISGRKQAEEKRKLLETQLHQMQKLDAVGQLAGGIAHDFNNILTAIIGFAEVMDM 319

Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
           +      +   +  +L A + + +     +   R     +           +    +   
Sbjct: 320 RMEQGAPLRHHVRQILAAAERAADLTQGLLAFSRK--QVLHVRCLDLREIIDGLKKMLCR 377

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS--------DGIA 466
            IP +   +      +  +  +          +           +A           G  
Sbjct: 378 LIPEDIDFRVKTAATEMTVMADRGQIEQVLMNLVTNAR------DAMPGGGVLTIKTGTG 431

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRK--PFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
           +I+ E   + TN      FG      L         +   T   +               
Sbjct: 432 VIDEE--FVRTNG-----FGVMGNYALISVTDNGCGMNAETREKVFEPFFTTKRRGKGTG 484

Query: 525 LEKITLG---STKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE 581
           L    +       +       I +   P           ++  ++E+ +      + ++ 
Sbjct: 485 LGLSIIYGIVKQHDG-----FITVDSSPGQGATFRVYLPLAGREKEETREHRQTPLPKRG 539

Query: 582 SSHKSDFL---ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
           +   +  L     V  E+     A++ ++       +  +      E         + + 
Sbjct: 540 NE--TVLLVEDDEVVRELN---RAVLEYA------GYTVIETIDGREALERFREQSHRMD 588

Query: 639 DIVNDLL 645
            +V+D++
Sbjct: 589 ILVSDII 595



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 48/485 (9%), Positives = 125/485 (25%), Gaps = 36/485 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + I   G +   +E   +++G  + ++  M + D+   + ++    I + L+   +   
Sbjct: 171 IFLISMDGRIAMANECACRSLGYSSDELCAMTVIDIDPAITVEKIRAIVEQLETNGSVTH 230

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFR-GFGIVHVNRVDNDPRALGKRLDKKF 204
           +T     +GT   V I    +       EF G    +                K L+ + 
Sbjct: 231 ETVHRHRDGTTFPVEITTNNI-------EFHGATYSYSFAKDISGRKQAEEKRKLLETQL 283

Query: 205 SHL--HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL-KTEKYPL 261
             +   +     +      ++            M  ++        H   +L   E+   
Sbjct: 284 HQMQKLDAVGQLAGGIAHDFNNILTAIIGFAEVMDMRMEQGAPLRHHVRQILAAAERAAD 343

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
           LT    +   ++  H   L+          +        +        +           
Sbjct: 344 LTQGLLAFSRKQVLHVRCLDLREIIDGLKKMLCRLIPE-DIDFRVKTAATEMTVMADRGQ 402

Query: 322 TPETV--------DKCPIPFFVYSHGNLFYANPSFLLL--TKYKSVDDIEIAGGLSTLLD 371
             + +        D  P    +         +  F+            +         ++
Sbjct: 403 IEQVLMNLVTNARDAMPGGGVLTIKTGTGVIDEEFVRTNGFGVMGNYALISVTDNGCGMN 462

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
           A               R   T +  S     ++ +                Q        
Sbjct: 463 AETREKVFEPFFTTKRRGKGTGLGLSIIYGIVKQHDG-----FITVDSSPGQGATFRVYL 517

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
            +   + +     R+  +      ++L        ++  + ++   NRAV +  GY V +
Sbjct: 518 PLAGREKEETREHRQTPLPKRGNETVL--------LVEDDEVVRELNRAVLEYAGYTVIE 569

Query: 492 -ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
            I  +       + +  +       I+     + L    +    + K+L +    +    
Sbjct: 570 TIDGREALERFREQSHRMDILVSDIIMPNLDGKALYDEIMKIRPDMKVLFISGYAEDALD 629

Query: 551 SSCYS 555
           +    
Sbjct: 630 ARGLF 634


>gi|294495496|ref|YP_003541989.1| integral membrane sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
 gi|292666495|gb|ADE36344.1| integral membrane sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
          Length = 575

 Score =  306 bits (784), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 77/247 (31%), Positives = 133/247 (53%), Gaps = 6/247 (2%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E  ++  +L ++ +  +K +  K++FL+ VSHE++TPLTAI   SE ++ + +       
Sbjct: 329 EVDKKTEQLENSNQRLQKLNRVKNEFLSMVSHELKTPLTAIRTSSEFLREEDY---DRET 385

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             E  + I R+ +    +V+DLLDIS+IESG+M    E V L E +   I +++  A + 
Sbjct: 386 QEEMLDLIIRNIDRQSRMVDDLLDISRIESGRMVFKEEKVDLKEIIDNVIQMMEPMATKH 445

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT-PSGGQIIISTTHTSNEEVILRV 741
            I I     N+ PR+ AD   + ++ +N+L+NAI FT   G  I I T   + + V + V
Sbjct: 446 GIAIERELDND-PRVKADKDKLLRVFVNLLNNAIKFTADRGESIKIKTE-ETGDFVEISV 503

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            D G+G+   E EK  + F Q+ ++ + +  G+GLGL + K +++ + G   + S P  G
Sbjct: 504 IDKGIGIPENEQEKIFEKFYQVDSTSRRKVGGSGLGLAIIKGIIEGHGGSIRVKSEPGVG 563

Query: 802 TLIEIIF 808
           +      
Sbjct: 564 STFVFTL 570


>gi|294494881|ref|YP_003541374.1| GAF sensor signal transduction histidine kinase [Methanohalophilus
           mahii DSM 5219]
 gi|292665880|gb|ADE35729.1| GAF sensor signal transduction histidine kinase [Methanohalophilus
           mahii DSM 5219]
          Length = 621

 Score =  306 bits (784), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 92/336 (27%), Positives = 161/336 (47%), Gaps = 11/336 (3%)

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL-DLRQTLEKITLGSTKEEKLLSLRI 543
           F +    + R      ++ N          ++L    ++  +     G  K    L++  
Sbjct: 283 FHWFTGRLKRNEVIQIVDPNRLPPEAAAEKKLLQTLGIKSLIAFPIWGEKKLAGFLTINN 342

Query: 544 I---IKKLPFSSCYSLTMHD----ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
                +         L + D    + + ++       AK + E   + K++F+A +SHE+
Sbjct: 343 TERIARWDQNDIYMLLVIADSVGAVIKKEKANKAFLRAKSLEEDVKTTKTEFIATMSHEL 402

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTPL AIIGFS+++ + R+G + N + ++Y+  I + G  +L+++ND+LD SKI S KM 
Sbjct: 403 RTPLNAIIGFSQLLSSNRYGNM-NEKELKYSFSILKGGKHLLNLINDILDFSKIHSNKME 461

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716
           L+ E ++L E   E  + +   A +K I +  +   +I  I  D     QI  N+LSNA+
Sbjct: 462 LNIETINLKEICDEIKTFITPLATKKGITVEYNNKFDI-DINLDKLKFIQIMSNLLSNAV 520

Query: 717 HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
            FTP  G++ +     +   V + V D+G+G+  ++L     PF Q  +S   +  GTGL
Sbjct: 521 KFTPDKGKVSVDIDFVAE-YVQVSVTDSGIGIPEHKLNMIFDPFIQADSSNTRKYGGTGL 579

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
           GL L K  V+ + G  ++ S   KG+      P+ D
Sbjct: 580 GLALVKEYVEMHGGTIWVESELGKGSTFTFTIPVND 615


>gi|116871682|ref|YP_848463.1| two-component sensor kinase [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116740560|emb|CAK19680.1| two-component sensor kinase [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 610

 Score =  306 bits (784), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 81/398 (20%), Positives = 169/398 (42%), Gaps = 29/398 (7%)

Query: 424 FPENMPQNGIEPEDVDTRINKRKM--EIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
             + + +       +  R+ + +   E E  +L S+L   +DG+   +R G ++  N   
Sbjct: 236 GVDEIGELADSFNTLTKRVQEAQAMTEGERRKLSSVLAYMTDGVIATDRRGKVILINTPA 295

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT-EILSLDLRQTLEKITLGSTKEEKLLS 540
            K+     E    +     L+          +  +      R TL+K  +          
Sbjct: 296 EKMLRVKHESANGRSIIDVLDIGDSYQFEDLMEVDGSLTMDRSTLDKPYILRAN------ 349

Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
             +I ++  F++     +HDI++ ++   +              + DF++ VSHE+RTPL
Sbjct: 350 FSVIQRETGFNNGVIAVLHDITDQEKVDQE--------------RRDFVSNVSHELRTPL 395

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
           T++  + E + +  +          +          ++ +VNDLL +S+++ G+ +L   
Sbjct: 396 TSMHSYLEALSDGAW--EDKEIAPRFLEVTQNETERMIRLVNDLLKLSRMDGGREHLEKS 453

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720
            V+  +  +  I   +    ++ I+ +         I  D   V Q+  NI+SNA  ++P
Sbjct: 454 FVNFTDFFNHIIDRFE-MMKKETIMFKRHIPKEPVIIEIDEDKVMQVLDNIISNANKYSP 512

Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
            GG+I        + E+ + + D G+G+   +L      F ++  ++     GTGLGL +
Sbjct: 513 DGGRISFYLKKFED-EIEISIADEGLGVPEEDLANVFDRFFRVDKARSREMGGTGLGLAI 571

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
           A+ +++A+ G+ +     +KGT+I+   P   +  P D
Sbjct: 572 AREVIEAHGGRIWAERNKSKGTVIKFTLP--YSDLPED 607


>gi|330808383|ref|YP_004352845.1| histidine kinase, Unorthodox [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327376491|gb|AEA67841.1| putative Histidine kinase, Unorthodox [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 1187

 Score =  306 bits (784), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 125/707 (17%), Positives = 251/707 (35%), Gaps = 66/707 (9%)

Query: 140 QNTWYGKTTLWPIEGTNLYVPIDLAALPI--YSRNREFSG----------FRGFGIVHVN 187
           +     +   W      + V ++  + P   +  + +F G           R    + + 
Sbjct: 269 RIQLTDREQRWLARHPVVRVVVNETSAPFTFFDADGDFRGISADLLELIRLRTGLRLDIQ 328

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247
           R  ND   +   L+ +   +  +        + K+      S    L  K   +  T   
Sbjct: 329 RRQNDSEMIAAVLNDQADMIAALLPSSERQLQLKFSRPYVDSSFVLLTRKQSDTPTTLDQ 388

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
                +   +  P++    S  P  +   T +      +       + S  S    ++  
Sbjct: 389 FGHASLAIAKGNPVIEWLRSQYPNIQIIET-DGPLRAVEMLAHGQVDGSVNSQVMANYF- 446

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
              +S+Y          TV      F + +  N    N            D++ +     
Sbjct: 447 ---ISSYAWRDRLQISSTVGTQQAMFALATVKNATELNAILDKALTSIDPDELGVINNRW 503

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
               +P                               W   N L +              
Sbjct: 504 RGYVSPSEH---------------------------TWRTYNRLFLQVGAGIGLLLLFSL 536

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
                ++ +    +  +  +  ++  + S+L  T   I + +R GI+ S N +  + F  
Sbjct: 537 AWNAYMQRQIRQRQRAELALNDQLEFMHSLLNGTPHPIYVRDRNGILQSCNDSYLQTFDV 596

Query: 488 PVEDILRKPF---TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL-SLRI 543
             ED++ K     ++            Y   +++      +++      ++  +   +  
Sbjct: 597 KREDVIGKNLMPGSMSNAFEAQEYQADY-QRVMAEGTALIVDRPLHIGDRQLTIYHWILP 655

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
                           DISE +Q   +L  +K+ A+  +  KS FLA +SHEIRTP+ A+
Sbjct: 656 YRNSAAEVQGIIGGWIDISERRQLFEELRASKQRADDANRAKSTFLATMSHEIRTPMNAV 715

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           IG  E+          +            S + +L+++ D+LDI++IESG ++L  E V+
Sbjct: 716 IGMLELALKHADKGHVD---RSTIEVAYESASGMLELIGDILDIARIESGHLSLAPERVN 772

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFA--NNIPRILADLRSVKQIALNILSNAIHFTPS 721
           L   +   I + +  A +K + +   F      P +L D    KQ+  N++SNA+ FT  
Sbjct: 773 LRALLQSVIRVFEGVARQKNLALSLQFDAAEGSPDVLMDPLRFKQVLSNLISNALKFTEQ 832

Query: 722 GGQ-IIISTTHTSNEEV---ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
           G   I +  + T  ++     L V D+G+G+   +L++  +PF Q+ N++++   G GLG
Sbjct: 833 GQVAIKVRLSPTDRDDALQMHLEVNDSGIGIGPADLQRLFEPFAQVDNTRRMARNGAGLG 892

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIF--------PLYDTSHP 816
           L +++ +     G  ++ S P  GT +++          P+     P
Sbjct: 893 LVISRNLCQMMGGSLHMNSQPGTGTQVQVRLQLTVLSTAPVRPPPEP 939


>gi|307945357|ref|ZP_07660693.1| two-component sensor histidine kinase [Roseibium sp. TrichSKD4]
 gi|307771230|gb|EFO30455.1| two-component sensor histidine kinase [Roseibium sp. TrichSKD4]
          Length = 512

 Score =  306 bits (784), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 95/249 (38%), Positives = 155/249 (62%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           ISE +        +++ AE  +  KS FLA +SHE+RTPL AI+GFSEV+K++  GP+ N
Sbjct: 243 ISELETANALSDESRRRAEAANMAKSRFLATMSHELRTPLNAILGFSEVMKDEVLGPMQN 302

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
            +Y  YA  I  SG  +L+++N++LD+S+IE+G+  L  E +S+ E V E ++++Q+ A+
Sbjct: 303 EQYKSYAADIHGSGQHLLNLINEILDLSRIEAGRHELQEEEISVTEIVEECLNMMQIRAD 362

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
           ++ I +       +P++ AD R+V+Q+ LN+LSNA+ FTP GG + I+   TS     + 
Sbjct: 363 DRNITLHNHLEKEMPKVWADERAVRQVVLNLLSNAVKFTPIGGDVRITVGWTSGGGQYVS 422

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V+D G G+   E+   M+ FGQ   + +   +GTGLGL + +A+V+ + GKF + S   +
Sbjct: 423 VKDNGPGIPEDEIPVVMEAFGQGSMAIKSAEQGTGLGLSIVQALVNMHGGKFTLRSKMHE 482

Query: 801 GTLIEIIFP 809
           GT   +  P
Sbjct: 483 GTEALMTLP 491


>gi|301166797|emb|CBW26374.1| putative histidine kinase/response regulator fusion protein
           [Bacteriovorax marinus SJ]
          Length = 1089

 Score =  306 bits (784), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 125/712 (17%), Positives = 236/712 (33%), Gaps = 61/712 (8%)

Query: 149 LWPIEGTNLYV-------PIDLAALPIYSRNREFSGFRGFGIVHVNRV-DNDPRALGKRL 200
             P +GT  +V        +      +   +R     +  G         N+   L +  
Sbjct: 241 RLPFDGTFEFVDNNGEKKWVRSVGRAVVESDRVV---KLVGTFQDVTQYINNEVKLVEVN 297

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
                 L     G      E   +           +  +++ +       +  +  E   
Sbjct: 298 KYLDLSLDSANLGIWDWNLETNSVLYDSRWA--RMLGYELNEIEPSIESWESRVHPEDLE 355

Query: 261 LLTS------EESSLPEQEDFHTINLNQYTK---KQYFGTLQNNSKESFEYLSHRNHPSL 311
              +      E  +   +      N          Q   +L++ S     +    +  + 
Sbjct: 356 AAQNDIRRYLEGKTEKYRNIHRMRNKQGEWVYILDQGVVSLRDESGRPLRFTGTHSDITS 415

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLL-------LTKYKSVDDIEIAG 364
               +  E    +  ++  I F         Y   + L        +  Y  +   +   
Sbjct: 416 LKKKEVIETAIEDLRERY-ITFNDDHQSFYEYCLKTLLEACDCSKGILGYYPISAADERY 474

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCI--------------AASARLHTIQWNRENS 410
             S  L     +     + +    +                   A      TI  +   S
Sbjct: 475 VYSVGLSDFTSNQEMMEEMLGKIIAHGDHYLSDYSTENEILIPGAEDFIAFTIHRDELRS 534

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM----QLCSILEATSDGIA 466
           L +     EK            +     +  I   K+E        +   ILE+T   + 
Sbjct: 535 LYILIASDEKKFDLDYYEYLYPLIQAITE-MIAYLKLEEYKNDKDYERKIILESTGVALW 593

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVF--LEQNTPSVMNHYLTEILSLDLRQT 524
                   L  + ++  L+GY   D           +             E++       
Sbjct: 594 SYYPVERRLELDDSMYNLWGYSKGDYENDIVAWESTMHPEDKDKALQEFIEMIKYKDHYE 653

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEKES 582
                +  +   K +  +  + +              D +     + +L  AK++AE   
Sbjct: 654 TSFRIITKSGTLKFIKAKADVVRDMNGKAIKVLGVNWDSTNDVIIQKELVIAKEMAEASE 713

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
             KS+FLA +SHEIRTP+  I+G   ++             ++    I  SG++++ I+N
Sbjct: 714 EAKSEFLANMSHEIRTPMNGILGMISLLSESDLTK----EQMDMLETIQSSGDILMTILN 769

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADL 701
           D+LDISK+++GK  L      +   +     L    A+EK I + ++ ++ +P  +  D+
Sbjct: 770 DILDISKLDAGKYELDIRDFDIRNCIENTTFLFSTLASEKGINLTSTISSVVPLFLKGDV 829

Query: 702 RSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEV--ILRVRDTGVGMTNYELEKAMK 758
             ++QI +N LSNAI FT  G  +I +     S+ +V  ++ V DTG+G+ +   E   +
Sbjct: 830 TRIRQILVNFLSNAIKFTERGEVKIEVGAIKKSDRDVSLVISVIDTGIGIHSDAQENIFE 889

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            F Q  +S      GTGLGL +   +++   G+  + S P KGT I    PL
Sbjct: 890 AFSQADSSTTRVYGGTGLGLSICSKLIEIMDGEVKLESEPGKGTNITFSLPL 941



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/290 (10%), Positives = 81/290 (27%), Gaps = 17/290 (5%)

Query: 286 KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYAN 345
           ++    L+  ++     L  R          E                ++ ++       
Sbjct: 141 EEQLTALKALARNVMALLIQRVKNLELVKTKEQLQEVERMASAGGWELYIETNE--VKWT 198

Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405
                +   +         GL         +++     V+L +     +        +  
Sbjct: 199 DEVYRIYGIELGTPTSKIDGLKNY-----TTESREKLEVLLSKCIEDRLPFDGTFEFVDN 253

Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465
           N E     +       +     +   G   +      N+ K+      L   L++ + GI
Sbjct: 254 NGEKKWVRSVGRAVVES--DRVVKLVGTFQDVTQYINNEVKLVEVNKYLDLSLDSANLGI 311

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
              N E   +  +   +++ GY + +I    + +   +         + +   L     +
Sbjct: 312 WDWNLETNSVLYDSRWARMLGYELNEIEPSIESWESRVHPEDLEAAQNDIRRYLEGKTEK 371

Query: 524 TLEKITLGSTKEEKLLSLRII-IKKLPFSSC----YSLTMHDISEWKQEK 568
                     K+ + + +    +  L   S     ++ T  DI+  K+++
Sbjct: 372 YRNIH-RMRNKQGEWVYILDQGVVSLRDESGRPLRFTGTHSDITSLKKKE 420


>gi|170751052|ref|YP_001757312.1| multi-sensor signal transduction histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
 gi|170657574|gb|ACB26629.1| multi-sensor signal transduction histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 630

 Score =  306 bits (784), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 103/378 (27%), Positives = 176/378 (46%), Gaps = 13/378 (3%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
           + ++     +   +L A  D +   +R G +L  + +  +L G     +        +  
Sbjct: 201 RERLRDNEARDRLLLSAIDDLVTWHDRNGRVLEASVSAVRLLGSDPARLRGHGLLERVHV 260

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITL-----GSTKEEKLLSLRIIIKKLPFSSC----- 553
                    ++++ +     TL          G      L+   +   ++          
Sbjct: 261 ADRPAFLKAVSDVAATGRPATLPLRLHVEPETGRADGASLIYAEMRAHRIEHGPHDAAMA 320

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
                 D++E  +   +L  A+  AE+  + K  FLA V+HE+RTPL AIIGFSEV+  +
Sbjct: 321 VVAVTRDMTEHHRHAAELERARAEAERADAIKGRFLANVTHELRTPLNAIIGFSEVLAGE 380

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
               LG  +  EYA  I  SG+ +L +VN LLD+S+I+SG  +   E   + + +     
Sbjct: 381 GAVSLGPVQAREYAGIIGASGHHLLGVVNTLLDMSRIQSGNFDCAPETFDVADLLRGCCD 440

Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
           L++L A+   + + T+  +    I AD  + +Q+ +N++SNA+ FTPSGG+I +S     
Sbjct: 441 LMRLKADAAGVAL-TAAPSGPVEITADPAACRQVLINLISNAVKFTPSGGRIDLSLR-RG 498

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQI-PNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
              + + V DTGVG+   +L K   PF Q      + + EGTGLGL + + +V  + G  
Sbjct: 499 AGSLDIVVADTGVGIGADDLPKLGTPFFQAGSGGYKRQHEGTGLGLSVVQGLVGLHGGSL 558

Query: 793 YIFSTPAKGTLIEIIFPL 810
            I S P  GT++ +  PL
Sbjct: 559 LIESAPQAGTVVTVTLPL 576


>gi|149912975|ref|ZP_01901509.1| Signal transduction histidine kinase [Roseobacter sp. AzwK-3b]
 gi|149813381|gb|EDM73207.1| Signal transduction histidine kinase [Roseobacter sp. AzwK-3b]
          Length = 678

 Score =  306 bits (784), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 84/382 (21%), Positives = 163/382 (42%), Gaps = 14/382 (3%)

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            + ++     +  S L+  +D + I++++G     +  +  + GY  ++++ + F+  + 
Sbjct: 23  TREQLRESEQKFRSFLDTANDVVYILSQDGTFQFLSPRILNVLGYQQDELVGQHFSSVIH 82

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTM 558
            +   V   +   ++     +                        L  +           
Sbjct: 83  PDDLPVCQSFFERVVINQQAEA-GLEYRVRHANGTWRWHDTNAAPLFDAQQDLQGMLGIG 141

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            DI + K   N L +A + AE  +  +S F++ ++HEIRTPL  ++G  +++        
Sbjct: 142 RDIQDRKLATNALQNALEKAEAATLARSRFISTMNHEIRTPLGGMLGILDLMALDE---- 197

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
            +P   E  NY   +G  +  IV+D+LD SK+E+G +    EPVS+ + +     L +  
Sbjct: 198 TDPEKKELLNYAKTAGKSLNRIVDDVLDFSKMEAGVLMFEQEPVSISDVIDTVRVLTESA 257

Query: 679 ANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-- 735
           +N +   I     N++P     D   ++Q+  N++SNA+ ++  G  III          
Sbjct: 258 SNAQGREIVVEIGNSVPNFFAGDANRLRQLISNLVSNAVRYSQDG-PIIIRANACEQGAT 316

Query: 736 -EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
             + + V D GVG+++ +     + F QI N      +GTGLGL + K +V+   G   +
Sbjct: 317 WRLRVEVEDFGVGISDTDRPNLFRDFSQIDNPLSAAAKGTGLGLAICKRIVEKLHGDIGV 376

Query: 795 FSTPAKGTLIEIIFPLYDTSHP 816
            S   +GT       +  T  P
Sbjct: 377 DSQLGEGTTFWFELDVTPTDGP 398



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/180 (11%), Positives = 49/180 (27%), Gaps = 5/180 (2%)

Query: 48  SFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVR-FTWNIDAHGYLKEISEELPKTI 106
             +     +Q  +++ +T     E+   F     T     + +   G  + +S  +   +
Sbjct: 6   QLDTKKQLEQALQALDDTREQLRESEQKFRSFLDTANDVVYILSQDGTFQFLSPRILNVL 65

Query: 107 GNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAA 165
           G    +++G     V     +    +    ++  Q    G                D  A
Sbjct: 66  GYQQDELVGQHFSSVIHPDDLPVCQSFFERVVINQQAEAGLEYRVRHANGTWR-WHDTNA 124

Query: 166 LPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF 225
            P++   ++  G  G G     +         +   +K       +    S    +    
Sbjct: 125 APLFDAQQDLQGMLGIG--RDIQDRKLATNALQNALEKAEAATLARSRFISTMNHEIRTP 182


>gi|315181590|gb|ADT88503.1| Periplasmic Sensor Hybrid Histidine Kinase [Vibrio furnissii NCTC
           11218]
          Length = 807

 Score =  306 bits (784), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 74/255 (29%), Positives = 123/255 (48%), Gaps = 7/255 (2%)

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            M    +  +    L  AK  AE  +  KS F++ +SHEIRTP+ +I+G S ++      
Sbjct: 444 VMRMGDKLDKLTGALKDAKLQAENANMAKSQFISNISHEIRTPMNSILGMSHLLMTSNL- 502

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
              +     +   ID+SG  +L ++ND+LD+SKI++GK+++   P  L   V +   + +
Sbjct: 503 ---SEEQRNHLITIDKSGKHLLSLINDILDMSKIDAGKVDIEEIPFDLAALVYDVHDIFE 559

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNE 735
             A +  + +      ++P +L D   +KQI LN +SNAI FT  G   I +    TS  
Sbjct: 560 YKAKKHGVKLHLDLDKSLPPLLGDPFRIKQIMLNFVSNAIKFTEQGDVTIRVQGAVTSES 619

Query: 736 --EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
              + L V D G+G++  +  K  + F Q   S   +  GTGLGL + K +     G+  
Sbjct: 620 VFALRLSVEDNGIGLSADDQMKVFESFQQADASTTRKYGGTGLGLAICKRIAHLMGGEVG 679

Query: 794 IFSTPAKGTLIEIIF 808
           + S    G+   +  
Sbjct: 680 VESRLGDGSTFWLTL 694


>gi|224477937|ref|YP_002635543.1| two-component sensor histidine kinase [Staphylococcus carnosus
           subsp. carnosus TM300]
 gi|222422544|emb|CAL29358.1| two-component sensor histidine kinase [Staphylococcus carnosus
           subsp. carnosus TM300]
          Length = 614

 Score =  306 bits (784), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 78/392 (19%), Positives = 168/392 (42%), Gaps = 32/392 (8%)

Query: 426 ENMPQNGIEPEDVDTRINKRKM--EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           + + +  +   ++  R+ + +   E E  +L S++   SDG+   +R G I   N    K
Sbjct: 235 DEIGELALAFNNLSKRVQEAQANTESEKRRLDSVITHMSDGVIATDRRGRIRIVNDMALK 294

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           + G   ED++       L+      ++       S  L    E+  +        +S   
Sbjct: 295 MLGMAKEDVMGYNMLSVLDLEDEFALDEMQENNNSFLLDINEEEGIIAR------VSFST 348

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
           I++   F + Y   +HD++E +Q +                + +F+A VSHE+RTPLT++
Sbjct: 349 IVQDTGFVTGYIAVLHDVTEQQQNE--------------RDRREFVANVSHELRTPLTSM 394

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN-----LH 658
             + E ++   +         ++ +        ++ +VNDLL +SK+++         + 
Sbjct: 395 NSYLEALEEGAW--KDEEIAPQFLSVTREETVRMIRLVNDLLQLSKMDNANEENASNQVT 452

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718
            E V  +  +++ I+  +     K +               D   + Q+  N+++NA  +
Sbjct: 453 KEIVDFNMFINKIIN--RHEMAAKDVTFVRDIPEETIFTEIDPDKMTQVFDNVITNATKY 510

Query: 719 TPSGGQIIISTTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
           +    ++            + +R++D G+G+   +++K    F ++  ++  +  GTGLG
Sbjct: 511 SRGDKRVEFHVKPNPLYNRMTIRIKDNGIGIPITKVDKIFDRFFRVDKARARKMGGTGLG 570

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           L ++K +V+A+ G+ +  S   +GT I I  P
Sbjct: 571 LAISKEIVEAHNGRIWANSVEGQGTSIFITLP 602


>gi|46912173|emb|CAG18968.1| putative sensor histidine kinase FexB [Photobacterium profundum
           SS9]
          Length = 778

 Score =  306 bits (784), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 88/394 (22%), Positives = 168/394 (42%), Gaps = 19/394 (4%)

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
           +  + +E E       + ++  +   L S L+A+ D I   N +G     NRA+++L G 
Sbjct: 111 IAMHDLENEVYQRENAQLELAEQSALLKSFLDASPDLIYYRNEKGEFSGCNRAMAELTGK 170

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
             + ++         +     +     ++   ++  T E+        + +  LR +   
Sbjct: 171 TEKGLVGLTPWDVYSEEAAIKIVETDEQVFQKNVSLTYEQWLEYPDGRKAVFELRKVPFY 230

Query: 548 LPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
                         DI+E KQ        +   EK S  K+ F++ +SHE+RTPL  I+G
Sbjct: 231 RRDGRRLGLMGFGRDITERKQ-------YQDAQEKASRDKTAFISTISHELRTPLNGIVG 283

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
            S ++         N     Y   +  S   + +I ND++D+ K +  ++ L  +P+  +
Sbjct: 284 LSRMLLETPL----NDEQRGYMRTVHVSAITLGNIFNDIIDMDKSDRRRLELMPKPLDFN 339

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ 724
           E V+E  ++  L A +K +         +P  I  D   ++Q+  N++ NA  FT  GG 
Sbjct: 340 EFVTEMENISSLMAEQKGLRFDLERLTKLPAFIEVDSTRLRQVLWNLIGNATKFTKEGGV 399

Query: 725 I-IISTTH-TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP-NSQQIRGEGTGLGLPLA 781
           I  +S+       E+   V D+G+G+   E++K    + Q+   S  +   GTG+GL ++
Sbjct: 400 ILSVSSEIFEHEAEITFDVEDSGIGIPASEVDKIFTMYYQVKQGSDNLHAVGTGIGLAVS 459

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIF--PLYDT 813
           + +V    G   + S   +G+   +    PL + 
Sbjct: 460 RQLVQLMGGNILVTSDIGEGSTFTVTIRVPLVEA 493



 Score = 46.9 bits (110), Expect = 0.015,   Method: Composition-based stats.
 Identities = 17/126 (13%), Positives = 38/126 (30%), Gaps = 5/126 (3%)

Query: 93  GYLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151
           G     +  + +  G     ++G+   DV S+   I        + ++  +   +  L  
Sbjct: 155 GEFSGCNRAMAELTGKTEKGLVGLTPWDVYSEEAAIKIVETDEQVFQKNVSLTYEQWLEY 214

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
            +G       +L  +P Y R+    G  GFG           +   ++  +  +      
Sbjct: 215 PDGRKAVF--ELRKVPFYRRDGRRLGLMGFG--RDITERKQYQDAQEKASRDKTAFISTI 270

Query: 212 KGHSSV 217
                 
Sbjct: 271 SHELRT 276


>gi|255691863|ref|ZP_05415538.1| two-component system sensor histidine kinase [Bacteroides
           finegoldii DSM 17565]
 gi|260622588|gb|EEX45459.1| two-component system sensor histidine kinase [Bacteroides
           finegoldii DSM 17565]
          Length = 888

 Score =  306 bits (784), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 100/488 (20%), Positives = 180/488 (36%), Gaps = 28/488 (5%)

Query: 338 HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397
            G + +AN  FL         DI      +  + A   ++    +       + +    +
Sbjct: 267 DGTVIFANRRFLYNHGLVDNTDISRLKIYN--IVADMPTEEAWQERCRNAVQNGSNTFIA 324

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
                I  +        +     + +            +  +    + +++     + + 
Sbjct: 325 HHPSRIHKDILAYECTMYNVISDSGEE----SFWSFAHDISERMRYEAQIKRLNRIMDTT 380

Query: 458 LEATSDGIAI--INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           +     GI +  IN +   +  NR       +    +  K    F              E
Sbjct: 381 INNLPAGIVVKEINNDFRYVYRNRESYNRDHFSDNPV-GKNDYDFYPPIVAEKKRQEDIE 439

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNKL 571
           + +      L  I  G  +   L+ L     K+               DI+E +  K +L
Sbjct: 440 VAATGK--GLHWIAEGKDRNGNLIILDKRKIKVDGDELSSPIIVSIEWDITELEMIKREL 497

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
             +K+ AE   + KS FLA +SHEIRTPL AI+GFS +I               Y   ++
Sbjct: 498 QSSKEKAEMSDNLKSAFLANMSHEIRTPLNAIVGFSHLITESD----DAEERKTYYQIVE 553

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
            +   +L ++N++LD+SKIESG +   F   SL     E          E  + +    +
Sbjct: 554 ANNERLLQLINEILDLSKIESGTIEFSFGLTSLHNLCQEIHDAHIFRTPE-GVQLVYEPS 612

Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-SNEEVILRVRDTGVGMTN 750
           +   RI  D   V Q+  N++ NA+ FT  G    I   +   + +++  V DTG G+  
Sbjct: 613 DESLRIETDKNRVFQVISNLIGNAVKFTKEGS---IKYGYELVDGQIVFHVTDTGTGIEP 669

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            ++ +  + F ++ N      +GTGLGL + K++V+   G+  + S    GT      P 
Sbjct: 670 EKVGRVFERFAKLNN----HAQGTGLGLSICKSIVERLGGQISVSSIVGVGTTFTFTLPY 725

Query: 811 YDTSHPHD 818
                P +
Sbjct: 726 STQETPKE 733



 Score = 48.5 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/279 (9%), Positives = 69/279 (24%), Gaps = 14/279 (5%)

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDI 360
           +Y       ++    ++      E      I  + Y+     +        T Y  V   
Sbjct: 108 QYRDITQRSNVKRQLEQANRTLREIQKVAQIGHWTYNTAENVFH------YTGYTGVLCK 161

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
           E    +S  +    + + +          + +     +  + I+ + +           +
Sbjct: 162 EDVQHISFDMYKQLIMEEDHPAFENWCEKNVSEFNQESISYRIRLDGDIFYVRIQTYLRE 221

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
                 +    G            +    ++  L   +    + I     +G ++  NR 
Sbjct: 222 ELPDG-SCNIEGYIQNITVL----QHRRNDINTLTHAINNAKESIFAAKPDGTVIFANRR 276

Query: 481 VSKLFGY-PVEDILRKPFTVFLEQ-NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
                G     DI R      +    T           +       +        K+   
Sbjct: 277 FLYNHGLVDNTDISRLKIYNIVADMPTEEAWQERCRNAVQNGSNTFIAHHPSRIHKDILA 336

Query: 539 LSLRI-IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKK 576
               +  +        +    HDISE  + + ++    +
Sbjct: 337 YECTMYNVISDSGEESFWSFAHDISERMRYEAQIKRLNR 375



 Score = 48.5 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 45/140 (32%), Gaps = 11/140 (7%)

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
             ILE T+D + +I+R GI +    +   L+    E +L K     L + T   +     
Sbjct: 12  QRILELTADTMLLIDRNGICVDI-DSHCDLWFLQEEVLLGKDIFELLPERTRDKVMPVFE 70

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA 574
            ++      +          E       +                DI++    K +L  A
Sbjct: 71  TVIGEHRSVSKNFKLELKN-ETFYFKCLMHPY----DDMVLCQYRDITQRSNVKRQLEQA 125

Query: 575 KKIAEKESSHKSDFLARVSH 594
            +   +        +A++ H
Sbjct: 126 NRTLREIQK-----VAQIGH 140


>gi|332664632|ref|YP_004447420.1| PAS/PAC sensor signal transduction histidine kinase
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332333446|gb|AEE50547.1| PAS/PAC sensor signal transduction histidine kinase
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 425

 Score =  306 bits (784), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 95/427 (22%), Positives = 182/427 (42%), Gaps = 62/427 (14%)

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
           I  +      ++L +I++  +DGI II+  G +   N A + LFGY  E++L K   + +
Sbjct: 2   IAHQYDSEAALRLKAIIKTATDGIIIIDDRGSMELVNEAAANLFGYEEEELLGKNIRMLM 61

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIII--KKLPFSSCYSLT 557
                   + Y+   +   +R+ +   +  +G  K+++   LR+ I   +LP    ++  
Sbjct: 62  PNPHHDAHDTYIQNYIQTGVRKIIGIGREVMGLRKDQRTFPLRLSISEVQLPERVVFTGI 121

Query: 558 MHDIS----------------------------------------------EWKQEKNKL 571
           +HD++                                              E K  +  L
Sbjct: 122 LHDLTAQKAAEAKIVELNQHLEEEVYRRTEELAATVNQLLNTNHKLEFEIQERKVAEATL 181

Query: 572 SHAKKIAEKE-------SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
              +K   K        ++ KS F++  SHE RTPL+ I+  ++ +           + +
Sbjct: 182 RKNEKELRKAFEKERELNTLKSRFVSMASHEFRTPLSTILSSAD-LLEMYTAEEQQDKRL 240

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           ++   I  + N ++ ++ND L +S++E GK+NL     +L+E   E +  VQ      ++
Sbjct: 241 KHTTRIKSAVNNLISVLNDFLSLSRLEEGKINLTPVEFNLEEFCDEVLDDVQALLKPGQV 300

Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744
           L      ++   +  D + +K + +N+ SNAI ++  G  I        N E+  R++D 
Sbjct: 301 LQHHGLLSDT-MVFLDKKMLKNVFINLFSNAIKYSEPGKMIDCYVEIMEN-ELCFRIQDY 358

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G+   E +     F +  N++     GTGLGL + K  V+   G+ +  ST  +GT+ 
Sbjct: 359 GIGIPEEEQQHLFTRFFRAHNAEN--IPGTGLGLNIVKRYVELMNGRIHFESTLGEGTVF 416

Query: 805 EIIFPLY 811
            +  PL 
Sbjct: 417 HVHIPLS 423



 Score = 38.9 bits (89), Expect = 3.6,   Method: Composition-based stats.
 Identities = 17/135 (12%), Positives = 41/135 (30%), Gaps = 11/135 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-----IGDLLKRQNTW 143
           ID  G ++ ++E      G    +++G  +  +    H D ++      I   +++    
Sbjct: 28  IDDRGSMELVNEAAANLFGYEEEELLGKNIRMLMPNPHHDAHDTYIQNYIQTGVRKIIGI 87

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +      +      P+ L+   +    R        GI+H         A    L++ 
Sbjct: 88  GREVMGLRKDQRTF--PLRLSISEVQLPER----VVFTGILHDLTAQKAAEAKIVELNQH 141

Query: 204 FSHLHEIKKGHSSVE 218
                  +    +  
Sbjct: 142 LEEEVYRRTEELAAT 156


>gi|312959787|ref|ZP_07774303.1| two-component system, NarL family, sensor histidine kinase EvgS
           [Pseudomonas fluorescens WH6]
 gi|311285953|gb|EFQ64518.1| two-component system, NarL family, sensor histidine kinase EvgS
           [Pseudomonas fluorescens WH6]
          Length = 1215

 Score =  306 bits (784), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 132/686 (19%), Positives = 255/686 (37%), Gaps = 66/686 (9%)

Query: 149 LWPIEGTNLYVPIDLAALPI--YSRNREFSGFRG-------------FGIVHVNRVDNDP 193
            W  +   + V ++ A  P+  +  N  F G                F IV    V+   
Sbjct: 303 RWLKDHPEVSVVVNEAYAPLTFFDANGNFRGITADLLELIRLRTGLRFKIVRGRDVNTMI 362

Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253
             +          +    +  + ++   +     ++    L  K   +           +
Sbjct: 363 DQVEAGKVDIIGGIVPSAERETQLD---FSRPYLENSYVMLTRKEAQAPTGLEEMAGKRL 419

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
             T+  PL+     S P+ E   T +    T K     +  +   +   L   N+  LS+
Sbjct: 420 AVTQGSPLIKFLRDSFPKIELVETGD----TFKSTELLVNGHVDGAVNTLVIANY-FLSS 474

Query: 314 YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
              + +     ++   P  F + +       +          + D++ +         A 
Sbjct: 475 PMFQDKVQISFSIGTMPATFALATSRRATELSSILDKALLSIAPDELGVINSRWRGYSAA 534

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
             S                            W   + L    I                +
Sbjct: 535 GDS---------------------------YWRDYHQLIARIIIGTGLLLLISLTWNAYM 567

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
             +    ++ +R +  +   + +++  T   I + +R+G++ + N +  ++F    ED++
Sbjct: 568 RRQIKQRKMAERALNDQFEFMRALVNETPHPIYVRDRQGLLQTCNDSYLQVFDVKREDVI 627

Query: 494 RKP---FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL-SLRIIIKKLP 549
            K     +  L          Y   +++      L++      K+  +   +      + 
Sbjct: 628 GKSAMQISTALAAEAAQYHADY-QRVVAEGNPLILDRTLHIRGKKLTIYHWILPYRDSIG 686

Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE- 608
                     DISE +Q  ++L  AK+ A++ +  KS FLA +SHEIRTP  A+IG  E 
Sbjct: 687 EVQGIIGGWVDISERRQLFDELRAAKERADEANRAKSTFLATMSHEIRTPKNAVIGMLEL 746

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
            +K    G L  P           S   +L+++ D+LDI++IESG+++L  E V+L E +
Sbjct: 747 TLKRADQGHLDRP----AIEVAYNSAKDLLELIGDILDIARIESGRLSLAPERVNLREVI 802

Query: 669 SEAISLVQLYANEKRILIRTSFANNIP--RILADLRSVKQIALNILSNAIHFTPSGG-QI 725
           +  + +    A +K + +   F  ++    +L D    KQ+  N++SNAI FT  G  +I
Sbjct: 803 ASVVRVFDGLARQKTLSLLLEFKPDLDDTEVLIDPLRFKQVLSNLVSNAIKFTERGQVKI 862

Query: 726 IISTTHTS---NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
            +    T      E+ L V DTG+G++  +  +  +PF Q  NS Q+   G GLGL + +
Sbjct: 863 KVEVLPTDLPQQIEMKLVVEDTGIGISREDQMRLFEPFAQADNSGQLARSGAGLGLVICR 922

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIF 808
           ++     G+  + S P  GT + +  
Sbjct: 923 SLCAMMGGQLSLSSVPMVGTQVHVSL 948


>gi|219667341|ref|YP_002457776.1| histidine kinase [Desulfitobacterium hafniense DCB-2]
 gi|219537601|gb|ACL19340.1| histidine kinase [Desulfitobacterium hafniense DCB-2]
          Length = 560

 Score =  306 bits (784), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 74/248 (29%), Positives = 141/248 (56%), Gaps = 3/248 (1%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           + + ++++L  A     + +++KS+FLA +SHE+RTPLT+++ F++++       L   R
Sbjct: 301 DLRIKQDELEAANIKLNEINTYKSEFLAIMSHELRTPLTSVMAFTDLLLQDLPKELKQER 360

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                 YI  +   +L ++N++LD++KIE+G++ L  E V + + +    S++   A +K
Sbjct: 361 Q--NLKYIKANSQNLLKLINNILDLAKIEAGRLELKLEYVDMADVMGAIDSVIAPLAKKK 418

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS-NEEVILRV 741
            I    S    +  + AD   ++++  N++ NAI FTP+ G++ I   +   +  +++RV
Sbjct: 419 GITWEISLDPEVSLLRADPEKLRRVIENLVGNAIKFTPAEGRVEIEVKNGPRDNWLMIRV 478

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            DTG+G+   E E+  + F QI +S   +  GTGLGL LAK +V  + G+ ++ S   KG
Sbjct: 479 IDTGIGIPPEEQEEIFERFTQIDSSNSRKYGGTGLGLALAKELVSLHKGELWVESELNKG 538

Query: 802 TLIEIIFP 809
           +   ++ P
Sbjct: 539 STFVVLLP 546


>gi|332702019|ref|ZP_08422107.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332552168|gb|EGJ49212.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 522

 Score =  306 bits (784), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 89/368 (24%), Positives = 166/368 (45%), Gaps = 12/368 (3%)

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
           +  E+  L +++E T   +A +  +      N+A  +  GY  E+I+ +           
Sbjct: 8   LPEELAVLRALVEHTEVQLAFLAPDFTFRYANKAYVRGCGYSREEIMGRNHFELFPDAEN 67

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS-LRIIIKKLPFSS--CYSLTMHDISE 563
             +   + +       +    +     +        R+        +    + ++ D++E
Sbjct: 68  ETIFRKVRDTGQAVSFKAKPFVYASQPERGTTYWDWRLAPVAGSDGNLLGLAFSLTDVTE 127

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + +  L  +++ AE+ S  KS+FLA +SHE+RTPL  ++G +E+          +   
Sbjct: 128 RVRTELALRRSEQEAEEASRAKSEFLASMSHELRTPLGGVLGMTEL----ALMSEPSAAV 183

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
             Y   + RSG  + D+VNDLLD+S+IE+ K+ L      L   ++ A+  + L A    
Sbjct: 184 RTYLQMVLRSGQALRDLVNDLLDLSRIEARKLELESVDFDLRAELALALDPLILDARANG 243

Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VIL 739
           + +R S A  +P  +  D   ++Q+  N++SNA+ FT  GG I ++    +      +  
Sbjct: 244 LCLRHSVAPAVPAMVRGDSGRLRQVITNLVSNALKFTEQGG-ITVAVESDTTGAPDLLRF 302

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
           RV DTG+G+   +LE     F Q+ +       G GLGL + + +VD   G+ +  S P 
Sbjct: 303 RVTDTGIGIAADQLEAVFDTFRQLRDKDGRTRGGMGLGLAICRRLVDLMGGRLWAESEPG 362

Query: 800 KGTLIEII 807
           KG+  +  
Sbjct: 363 KGSCFQFT 370



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/315 (8%), Positives = 69/315 (21%), Gaps = 22/315 (6%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150
                +  ++   +  G    +++G    ++      +       +         K   +
Sbjct: 31  PDFTFRYANKAYVRGCGYSREEIMGRNHFELFP--DAENETIFRKVRDTGQAVSFKAKPF 88

Query: 151 -----PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
                P  GT  +        P+   +    G      +             +R +++  
Sbjct: 89  VYASQPERGTTYWDW---RLAPVAGSDGNLLGLAF--SLTDVTERVRTELALRRSEQEAE 143

Query: 206 HLHEIKKGHSSVEKEKYD-----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
                K    +    +       +               V +  +        L+     
Sbjct: 144 EASRAKSEFLASMSHELRTPLGGVLGMTELALMSEPSAAVRTYLQMVLRSGQALRDLVND 203

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
           LL        + E        +         L  +++ +   L H   P++ A       
Sbjct: 204 LLDLSRIEARKLELESVDFDLRAELALALDPLILDARANGLCLRHSVAPAVPAMVRGDSG 263

Query: 321 LTPETVDKC-PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
              + +             G +  A  S        + D +      + +  A    +  
Sbjct: 264 RLRQVITNLVSNALKFTEQGGITVAVESDT----TGAPDLLRFRVTDTGIGIAADQLEAV 319

Query: 380 AIKPVMLYRSDRTCI 394
                 L   D    
Sbjct: 320 FDTFRQLRDKDGRTR 334


>gi|295101501|emb|CBK99046.1| Signal transduction histidine kinase [Faecalibacterium prausnitzii
           L2-6]
          Length = 978

 Score =  306 bits (784), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 99/382 (25%), Positives = 166/382 (43%), Gaps = 15/382 (3%)

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREG-IILSTNRAVSKLFGYPVEDILRKP 496
              R    ++         +     D   +++ E   +   +  + +L G P  ++ +  
Sbjct: 321 TTLRRKNTEISYRDELFQKLSLNVDDVFLMLDAETSKVDYVSPNIERLLGIPWREVRQNA 380

Query: 497 FT--VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554
           F                 L  +        LE      TKE +      I  ++   + Y
Sbjct: 381 FALDKLGAPEQAESFLDGL--LSGQQREWDLEFE-HLETKERRWFHNIAIGSEVEGRTKY 437

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
            L M D +  KQ    LS A   AE  +  KS FL+ +SH+IRTP+ AIIGF+ +  +  
Sbjct: 438 ILVMSDRTADKQVNQALSDAVAAAETANRAKSAFLSNMSHDIRTPMNAIIGFTTLAISNI 497

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                  R  +Y      S + +L ++ND+LD+S+IESGK++L    V+L E + +  ++
Sbjct: 498 D---DKERVKDYLAKTLASSSHLLSLINDVLDMSRIESGKLHLEEVEVNLSEVLHDLKTI 554

Query: 675 VQLYANEKRILIRTS-FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
           V      K++ +           +  D   + QI LN+LSNAI FTP+GG + +     +
Sbjct: 555 VSGQIYAKQLELYMDAMDVTDEDVYCDKTRLNQILLNLLSNAIKFTPAGGTVSVRVRQLA 614

Query: 734 N-----EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                  +   R++D G+GM+    +K  +PF +   S   R +GTGLG+ + K +VD  
Sbjct: 615 GQVRGCGQYEFRIKDNGIGMSPEFAKKIFEPFERERTSTVSRIQGTGLGMAITKNIVDMM 674

Query: 789 MGKFYIFSTPAKGTLIEIIFPL 810
            G   + +   KG+   I  PL
Sbjct: 675 GGTIEVQTAQGKGSEFIIRVPL 696


>gi|110680736|ref|YP_683743.1| sensory box histidine kinase/response regulator, putative
           [Roseobacter denitrificans OCh 114]
 gi|109456852|gb|ABG33057.1| sensory box histidine kinase/response regulator, putative
           [Roseobacter denitrificans OCh 114]
          Length = 794

 Score =  306 bits (784), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 96/472 (20%), Positives = 178/472 (37%), Gaps = 16/472 (3%)

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
            +   I  G    L A        ++ +     D +              R         
Sbjct: 89  DEVTPIVDGPDAGLRAALPDVQRRVEDLRPQVRDLSLAGIQVFAKEDAMRRAALSQTLVK 148

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEI--EVMQLCSILEATSDGIAIINREGII 474
                      +         V  R  +   E      +    L ++ D + +++  G I
Sbjct: 149 LAASIFGLILFLLFALATLLKVHRRRQQAAHENLVMRSRFEVTLASSLDAVLVVDTNGRI 208

Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNT-PSVMNHYLTEILSLDLRQTL---EKITL 530
           +  N A   +FGY   + L       +       +    +   L    R+ +        
Sbjct: 209 MDFNGAAETVFGYSRAEALGGDMADMIVPQHMREMHRKGMARFLETGKRKIVGAGRVRLD 268

Query: 531 GSTKEEKLLSLRIIIK--KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
           G  K  ++  + + I   ++     +   + DI+   + + ++  A+  A++    KSD 
Sbjct: 269 GLRKSGEVFPVELSISLSEVNGERVFVSFLRDITRELETEAQVRAARDKAQEGEKAKSDL 328

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
           L  +SHE+RTPL  I+G   ++  +RF    + R     N I  SG L+L  VND+LD+S
Sbjct: 329 LTVMSHEMRTPLNGILGSLALLDKERF----DDRQKRLLNSISVSGELLLSHVNDVLDLS 384

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR-TSFANNIPRILADLRSVKQI 707
            +E            L   + +    +   A  +   +  T  ++++  +    R+++Q 
Sbjct: 385 SLEKDAPRREKVNFDLAGLLQQVTESLMANAEARGNRLLLTRLSDDLKTVTGAKRALQQC 444

Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEE-VILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
            +N+L NAI FT  G ++ +     +  + V +RV DTGVG+    +++    F  I  +
Sbjct: 445 LVNLLGNAIKFTADG-RVSVEAERLNGGDLVEIRVSDTGVGIAPENMDRIFDEFVTIDTA 503

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS-HPH 817
              +  GTGLGL + K +V+   G     S   +G+L  +  PL      PH
Sbjct: 504 YARQNTGTGLGLAITKRLVEGMGGTLEAESLLGEGSLFTLRVPLPVAQVEPH 555



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 53/450 (11%), Positives = 118/450 (26%), Gaps = 33/450 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP--NNHIGDLLKRQNTWYGK 146
           +D +G + + +       G    + +G  + D+    H+       +   L+        
Sbjct: 202 VDTNGRIMDFNGAAETVFGYSRAEALGGDMADMIVPQHMREMHRKGMARFLETGKRKIVG 261

Query: 147 TTLWPIEG---TNLYVPIDLAALPIYSRNREFSGFRGF-GIVHVNRVDNDPRALGKRLDK 202
                ++G   +    P++L+         E +G R F   +     + +  A  +    
Sbjct: 262 AGRVRLDGLRKSGEVFPVELSISLS-----EVNGERVFVSFLRDITRELETEAQVRAARD 316

Query: 203 KFSHLHEIKKGHSSVEKEKYD-----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257
           K     + K    +V   +       I    +     R  ++   L    +   ++L + 
Sbjct: 317 KAQEGEKAKSDLLTVMSHEMRTPLNGILGSLALLDKERFDDRQKRLLNSISVSGELLLSH 376

Query: 258 KYP--LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
                 L+S E   P +E     +L    ++     + N        L  R    L    
Sbjct: 377 VNDVLDLSSLEKDAPRREKV-NFDLAGLLQQVTESLMANAEARGNRLLLTRLSDDLKTVT 435

Query: 316 DEGENLTPETVDKCPIPFFVYSHGNL----FYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
                L    V+         + G +       N   L+  +            +  + D
Sbjct: 436 GAKRALQQCLVNLLGNAIKFTADGRVSVEAERLNGGDLVEIRVSDTGVGIAPENMDRIFD 495

Query: 372 APKLSDNNAIKP-----VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
                D    +      + L  + R        L       E SL    +P   A   P 
Sbjct: 496 EFVTIDTAYARQNTGTGLGLAITKRLVEGMGGTLEAESLLGEGSLFTLRVPLPVAQVEPH 555

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
                  +  D  +  ++  +  +      IL        ++     +         +  
Sbjct: 556 LGTHVSSKTADSQSYAHRALVVDDNDINRMILREM-----LLGAGLRVEEAADGFEAIKH 610

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
              E        + +         H + ++
Sbjct: 611 ISQERFDIVFLDISMPGIDGIETLHRIRQL 640



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/289 (8%), Positives = 72/289 (24%), Gaps = 7/289 (2%)

Query: 167 PIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFS 226
            ++  + + S FR    ++ +RV    ++    +  K           +    E   I  
Sbjct: 37  AVHGHDSDLSVFRKRYDIYYSRVRTLTQSAFYNVISKEPDAQVGLAAIAGFMDEVTPIVD 96

Query: 227 QQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKK 286
                    + +    + +      D+           +              +      
Sbjct: 97  GPDAGLRAALPDVQRRVEDLRPQVRDLSLAGIQVFAKEDAMRRA---ALSQTLVKLAASI 153

Query: 287 QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANP 346
                    +  +   +  R   +                        V ++G +   N 
Sbjct: 154 FGLILFLLFALATLLKVHRRRQQAAHENLVMRSRFEVTLASSLDAVLVVDTNGRIMDFNG 213

Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI--AASARLHTIQ 404
           +   +  Y   + +   G ++ ++    + + +         + +  I  A   RL  ++
Sbjct: 214 AAETVFGYSRAEALG--GDMADMIVPQHMREMHRKGMARFLETGKRKIVGAGRVRLDGLR 271

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
            + E       I   + N     +        +++T    R    +  +
Sbjct: 272 KSGEVFPVELSISLSEVNGERVFVSFLRDITRELETEAQVRAARDKAQE 320


>gi|91202233|emb|CAJ75293.1| very similar to histidine kinase [Candidatus Kuenenia
           stuttgartiensis]
          Length = 542

 Score =  306 bits (784), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 87/259 (33%), Positives = 148/259 (57%), Gaps = 8/259 (3%)

Query: 559 HDISEWKQEKNKLSHA-------KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
            +++  K+ +N+L  +       K + E  +  K+ FL+ +SHE+RTPL  IIG+++++ 
Sbjct: 136 REMNGRKKVENELRTSYKNLEAAKLLQEHANRAKTQFLSNMSHELRTPLNVIIGYTDLLS 195

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
            Q  G L N + + Y   I+ SG  +L ++NDLLD+SKI++G M L  E VS+DE ++  
Sbjct: 196 EQLPGKL-NEKQLRYIGEINSSGKFLLSLINDLLDMSKIDAGAMELELEDVSIDELINGM 254

Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
           +S++     +K+I ++      +  ++ADLR  KQI +N+L+NA+ FTP  G++ I    
Sbjct: 255 VSMMSRQFVKKKIKVKIIIEPELSVVMADLRKCKQILMNLLTNALKFTPKDGRVEICAVS 314

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
             +  V + VRDTG+G+   +++K    F Q  N    +  GTG+GL L + +V+ + GK
Sbjct: 315 DGDSGVKIEVRDTGIGIAEDKIDKIFSEFYQAENVIDEQLGGTGIGLALTRRLVELHDGK 374

Query: 792 FYIFSTPAKGTLIEIIFPL 810
             + S   KG+      PL
Sbjct: 375 IGVESKLGKGSTFWFTLPL 393


>gi|309389652|gb|ADO77532.1| multi-sensor signal transduction histidine kinase [Halanaerobium
           praevalens DSM 2228]
          Length = 608

 Score =  306 bits (784), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 84/372 (22%), Positives = 154/372 (41%), Gaps = 28/372 (7%)

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
            +IN +K+ +E  +  +++   ++ + + + +  I+  N    KLF    + I      V
Sbjct: 253 EKINIKKLLMEKEKSEAVVNNLNNPLIVTDHDHKIVLINEVAKKLFSLNKDIINTHFLEV 312

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT-- 557
              +         + E +     +           +EK   +                  
Sbjct: 313 IQAEE--------IFEYIKNPEEKEKNIFNFTKDGKEKHYRISTNKVVDEDEEYQFTVTL 364

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
           + DI+  K+                + KS+F++ VSHE RTPLT++     ++ N+  G 
Sbjct: 365 LEDITNLKEI--------------DNMKSEFVSTVSHEFRTPLTSMNMGLSMVINEDTGK 410

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
           L N    E           +  +VNDLLD+SKIESG++ + F+ V+++E V + +     
Sbjct: 411 L-NEEQRELLEAAYEDVERLTGLVNDLLDLSKIESGRIEMEFDKVNINEIVEKTLDPFYK 469

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737
            A EK I +  +   N     AD   V  +  N++ NA+ +  +G +I I         V
Sbjct: 470 QAKEKEIALNFNKQENNIFAWADPTKVSWVISNLIGNALRYADNG-EIEIKAEVK-GRRV 527

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
           ++ V D G G+      K    F +  N +  +  GTGLGL ++K ++ A+ G+ ++ S 
Sbjct: 528 LVSVTDDGPGIPKEYQSKIFDKFVRAGNDKNEKS-GTGLGLAISKEIITAHNGRIWVESE 586

Query: 798 PAKGTLIEIIFP 809
              G+      P
Sbjct: 587 EGNGSTFSFYIP 598


>gi|301309710|ref|ZP_07215649.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
 gi|300831284|gb|EFK61915.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
          Length = 522

 Score =  306 bits (784), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 100/530 (18%), Positives = 200/530 (37%), Gaps = 59/530 (11%)

Query: 318 GENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
            E        K P+   VY   G L   N +   L      D + I      L + P   
Sbjct: 9   EEMSFNALFQKLPVGIEVYDERGQLVDLNRTDENLFAISRKDIMGIN-----LFENPNFP 63

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQ---------WNRENSLAMTFIPFEKANQFPEN 427
           ++       L + +      +     IQ              +L ++        +  + 
Sbjct: 64  EDKI---ARLKQGEMVVFDCNYEFDNIQTNEYYNIDPKKEGTNLRLSIKCVPLEGEAEDI 120

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA---------IINREGIILSTN 478
                +  ++ +      K+E    +L +++  +   +           I+ +  +L  N
Sbjct: 121 CGYVLMFTDETEEYQKSEKVEELFTKLKTVMRCSDSLLWEYDVKTDKMHIDLDLRVLG-N 179

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS-TKEEK 537
           ++  +          +K F   +       +   +     +   +  E         E +
Sbjct: 180 KSRLRASNLT----TKKDFCEIVHPEDRERVL--VQGFEKIVTGEIGEYSIQYRQLFEGQ 233

Query: 538 LLSLRIIIKKLPFSSC-----YSLTMHDISEWKQEKNKLSHAKKI----------AEKES 582
            + +R       +            + DI++    ++KL   ++           A++ +
Sbjct: 234 YVWVRAYAYPYKYDEAGRPAKILYYLMDITDEIAMQDKLRWVERERQRKEYELAKAKEAN 293

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
             KS FLA +SHEIRTPL AI+GF+ ++   +        +  Y + ID++  L+L ++ 
Sbjct: 294 RLKSMFLANMSHEIRTPLNAIVGFANILAETKEIEEEEREF--YVDIIDKNSELLLQLIE 351

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702
           D+LD SKIE+G  ++        E   E  ++  L    K +       +    + +D +
Sbjct: 352 DILDFSKIEAGTFDITKRNFDFKEICEETYAVHALKIP-KNVRFVFDQGSQPVTVFSDPK 410

Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
            V Q+  N L+NAI FT  G +I ++   + N+E+ + V DTG+G++  +       F +
Sbjct: 411 RVVQVISNFLTNAIKFTSEG-EIKLAYKVS-NDEIRVSVSDTGMGISEEDCRTIFDRFVK 468

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
           +   +    +GTGLGL + K +++   G+  + ST   G+      PL +
Sbjct: 469 LNACK----QGTGLGLAICKNIIEKLGGRIGVESTLGVGSTFWFTLPLKE 514


>gi|255307672|ref|ZP_05351843.1| two-component sensor histidine kinase [Clostridium difficile ATCC
           43255]
 gi|306520996|ref|ZP_07407343.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-32g58]
          Length = 441

 Score =  306 bits (784), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 84/369 (22%), Positives = 172/369 (46%), Gaps = 30/369 (8%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQ 503
            +++ + +QL SIL++ S GI  I+  G IL  N    ++       ++      V +++
Sbjct: 79  EEVQYKHLQLRSILKSISHGILAIDVNGNILLINDEAKEMIKSEPNQLVEGHNINVVIKE 138

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMH 559
                    L +IL   +     +    +TK++ +  +++    L  ++       + + 
Sbjct: 139 E------EILKQILQF-IGSKDNETANITTKDDIVYKIKVDPVYLQNTNNVIIGSIVNIE 191

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           DI++  + +              + +SDF+A VSHE++TPLT+I GF E +K+     + 
Sbjct: 192 DITKKVKLE--------------NMRSDFVANVSHELKTPLTSISGFVETLKSNE--NID 235

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
                 +   I+   + +  +++D+L +S +E+ K  L  E V + +   E   + Q  A
Sbjct: 236 VNTRNRFLEIIESESDRLKRLIDDILLLSFVEN-KDTLLMENVVVYDVFKEVYEITQHSA 294

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
           +EK I +     +    IL++   +KQ+ LN++ NAI +T   G + +       E++++
Sbjct: 295 SEKNIEVLYKCDDKSISILSNKDYIKQVFLNLVDNAIKYTQDNGIVQV-VVLKDEEKIVI 353

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
           +V D GVG+   ++E+  + F ++  ++     GTGLGL + K +V +  G   + S   
Sbjct: 354 KVIDNGVGIPKEDVERIFERFYRVDKARSRDVGGTGLGLAITKHIVKSLNGCIKVKSELG 413

Query: 800 KGTLIEIIF 808
            G+   +  
Sbjct: 414 IGSEFIVTI 422


>gi|206562088|ref|YP_002232851.1| hybrid two-component system kinase-response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|198038128|emb|CAR54076.1| hybrid two-component system kinase-response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 1010

 Score =  306 bits (784), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 108/702 (15%), Positives = 230/702 (32%), Gaps = 41/702 (5%)

Query: 126 HIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVH 185
                +    ++  +  W G           L     +   P+   +  F       + +
Sbjct: 84  DAKQASMRRAVINAELLWNGHPPHAREASDALRKDGHVLLAPMRGVSEIFLAASPDALAN 143

Query: 186 VNRVD--NDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL 243
                           +           +G++          +   PPP +   + ++ +
Sbjct: 144 DETDRYVQLMERQTISVAAAERQTGRAVRGYAYSPDRNVIAIT---PPPSMPYPDLLAHI 200

Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303
                H             ++   +   +                  T+    + +F+  
Sbjct: 201 GVPDTHALIQHLAFDVADWSNPAIARYWRLSRRIAWQAPAIDPLTGKTVFRLVEPAFDGQ 260

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIA 363
            H          D   +      +   +   V  HG +             +    +   
Sbjct: 261 KHFMTFVSDFDVDVIADRLRHAPEDA-VAMLVDQHGRVVLDVD---RTDNSEDGAALMKH 316

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
                      ++ + + +  +   +DR      A ++   W    + A+      +   
Sbjct: 317 ALAEGTWRRGLVNFDESYRHGVFTITDRISDTGYAIVYAYSW-HTIAYAIWATMLREFGT 375

Query: 424 FPENMPQNGIEPEDVDTRI-----NKRKMEIEVMQL-CSILEATSDGIAIINREGIILST 477
               +          D R+      + +   E  ++  +I+     GI +++ +   +  
Sbjct: 376 IATILIVLWTLVIAFDLRVFAPLFRRSRRVFESERMSRTIVATAPFGIGLVSPDTHQVLL 435

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
              + +L+                      ++  Y     +   +  +E          +
Sbjct: 436 RNRMLELYDREAGA----------PPLHERLLARYREHADASPAQLDVELPVTLDDGRTR 485

Query: 538 LLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
            L +  +  +         +  DI+            ++  +  +  KS FLA +SHEIR
Sbjct: 486 DLLVNFVRVRYKGKDALLCSFSDITTRADA-------QRALDSANRAKSTFLATISHEIR 538

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TPL A++G  E++           R     + +  +  ++LD++N++LD++KIE+ +M L
Sbjct: 539 TPLNAMLGNLELL----DKAPDPSRQKPRLHAVTSAARMLLDMLNNVLDMTKIEADRMTL 594

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAI 716
                 +DE + +   L +  A  + I +R      +      D   V+QIA+N++SNAI
Sbjct: 595 EATGFRIDELMRDVADLFEPVAGARGIALRIDVDPAVTHTYLGDPMRVRQIAVNLVSNAI 654

Query: 717 HFTPSGGQIIISTTHTSNEE--VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
            FT  G  + +S + +      V +RV D+G+GMT  +L    +PF Q   S   R  GT
Sbjct: 655 KFTDRGA-VALSVSASGGGATPVTIRVSDSGIGMTADQLAHVFEPFAQADESIARRFGGT 713

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           G+GL L+  + ++  G+    S P  G+   +  PL     P
Sbjct: 714 GIGLALSYKLAESMGGRIEADSVPGVGSTFVVTLPLPLDRQP 755


>gi|126700251|ref|YP_001089148.1| two-component sensor histidine kinase [Clostridium difficile 630]
 gi|254976230|ref|ZP_05272702.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-66c26]
 gi|255093617|ref|ZP_05323095.1| two-component sensor histidine kinase [Clostridium difficile CIP
           107932]
 gi|255101805|ref|ZP_05330782.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-63q42]
 gi|255315365|ref|ZP_05356948.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-76w55]
 gi|255518030|ref|ZP_05385706.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-97b34]
 gi|255651146|ref|ZP_05398048.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-37x79]
 gi|260684212|ref|YP_003215497.1| two-component sensor histidine kinase [Clostridium difficile CD196]
 gi|260687871|ref|YP_003219005.1| two-component sensor histidine kinase [Clostridium difficile
           R20291]
 gi|115251688|emb|CAJ69523.1| Two-component sensor histidine kinase [Clostridium difficile]
 gi|260210375|emb|CBA64751.1| two-component sensor histidine kinase [Clostridium difficile CD196]
 gi|260213888|emb|CBE05916.1| two-component sensor histidine kinase [Clostridium difficile
           R20291]
          Length = 429

 Score =  306 bits (784), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 84/369 (22%), Positives = 172/369 (46%), Gaps = 30/369 (8%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQ 503
            +++ + +QL SIL++ S GI  I+  G IL  N    ++       ++      V +++
Sbjct: 79  EEVQYKHLQLRSILKSISHGILAIDVNGNILLINDEAKEMIKSEPNQLVEGHNINVVIKE 138

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMH 559
                    L +IL   +     +    +TK++ +  +++    L  ++       + + 
Sbjct: 139 E------EILKQILQF-IGSKDNETANITTKDDIVYKIKVDPVYLQNTNNVIIGSIVNIE 191

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           DI++  + +              + +SDF+A VSHE++TPLT+I GF E +K+     + 
Sbjct: 192 DITKKVKLE--------------NMRSDFVANVSHELKTPLTSISGFVETLKSNE--NID 235

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
                 +   I+   + +  +++D+L +S +E+ K  L  E V + +   E   + Q  A
Sbjct: 236 VNTRNRFLEIIESESDRLKRLIDDILLLSFVEN-KDTLLMENVVVYDVFKEVYEITQHSA 294

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
           +EK I +     +    IL++   +KQ+ LN++ NAI +T   G + +       E++++
Sbjct: 295 SEKNIEVLYKCDDKSISILSNKDYIKQVFLNLVDNAIKYTQDNGIVQV-VVLKDEEKIVI 353

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
           +V D GVG+   ++E+  + F ++  ++     GTGLGL + K +V +  G   + S   
Sbjct: 354 KVIDNGVGIPKEDVERIFERFYRVDKARSRDVGGTGLGLAITKHIVKSLNGCIKVKSELG 413

Query: 800 KGTLIEIIF 808
            G+   +  
Sbjct: 414 IGSEFIVTI 422


>gi|330964084|gb|EGH64344.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. actinidiae str. M302091]
          Length = 1195

 Score =  306 bits (784), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 122/753 (16%), Positives = 247/753 (32%), Gaps = 52/753 (6%)

Query: 75  VFDPIPRTVRFTWNI-DAHGYLK-EISEELPKTIGNYAFKMIGMRLCDVSD-ILHIDPNN 131
            F+     V F + + D    L   I   L           +G  +       L  D   
Sbjct: 221 KFESQLPPVGFAFAVRDDEQRLLALIDRALSSI-----DASVGREVLSRWTIGLGADVEG 275

Query: 132 HIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIY-SRNREFSGFRGFGIVHVNRVD 190
               L        G    W ++  ++ +        IY  +N  + G     +  ++R+ 
Sbjct: 276 QRIRL-------GGAERRWLLKHPSVTISTTQHPPYIYKDKNGHWVGLNADVLARISRM- 327

Query: 191 NDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK 250
              + + K        +  ++ G + +      +         L         +  +   
Sbjct: 328 TGLQFVHKEAASTQRSIEVLRAGQADMN---TTLAENAERRRLLDFTYSFGGNSWMFVVH 384

Query: 251 DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310
            D         L+ +  +LP +   H +      +          + +    L       
Sbjct: 385 SDRSSQVSLDSLSGQVLALPAR---HALEDMIRREYPLIKLRLVETYDQARALVESGAAD 441

Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
            +   +                 +++  G L  A  S            I+    L  +L
Sbjct: 442 ATIQNEA--------------GAYLFPSGQLKVA-RSVDGKWSPDRFSVIKTQPELLGIL 486

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
           +        A    +  +   + +          W R        +              
Sbjct: 487 NKALEEFPVAELRSIRLKWLGSSLP-----QPSLWGRIPPWVFWVLALALLTGLVSLAWS 541

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490
           + ++ +       +R++  ++    ++L+   + I + + +G ++S NR+  +  G   E
Sbjct: 542 SRLKVQIRQRLRAERQLNDQLAFKRALLDGIPNPIYVRDLKGRLISCNRSYEQSLGVSFE 601

Query: 491 DILRKPF--TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            +  +       + +     M+     +L        ++    S K   +    +     
Sbjct: 602 QMNGRRLLDVELIPRPLAEQMHADYLTLLENHQPVFSDRTIELSGKRMDVWQWTVPFFAA 661

Query: 549 PFS-SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
                       DI+E K  + +L  A ++A + +  KS FLA +SHEIRTP+ AIIG  
Sbjct: 662 DGQLQGLLGGWIDITERKLLEQQLEEAVRLAAQANEAKSVFLASMSHEIRTPMGAIIGLL 721

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
           E                +      RS   ++ ++ + LD+++IE+G M L      L   
Sbjct: 722 E--LECEHALRRGEAPSQGLQVAHRSATELVALIGESLDLARIEAGGMQLSLVVTPLQTF 779

Query: 668 VSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGG--- 723
               ++L    A +K + +R   A         D   ++Q+  N+L NA+ FT  G    
Sbjct: 780 FEGVLALFSAQARDKGLELRLELAEQARGDYWLDPLRLRQVVHNVLGNALKFTRQGAVVV 839

Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
           ++ +S     +  V + + D+GVG+     ++  +PF Q  +       G+GLGL + + 
Sbjct: 840 KVEVSDDSPDSSRVRIGIMDSGVGIEPARQQQIFQPFTQAADDTAAHYGGSGLGLSITRQ 899

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           +V+   G   + S P  GT + I  PL     P
Sbjct: 900 LVELMKGDISLHSEPGTGTRVTIDVPLARVKEP 932


>gi|254227791|ref|ZP_04921222.1| conserved hypothetical protein [Vibrio sp. Ex25]
 gi|262395834|ref|YP_003287687.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio sp. Ex25]
 gi|151939833|gb|EDN58660.1| conserved hypothetical protein [Vibrio sp. Ex25]
 gi|262339428|gb|ACY53222.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio sp. Ex25]
          Length = 858

 Score =  306 bits (784), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 84/376 (22%), Positives = 163/376 (43%), Gaps = 23/376 (6%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            ++E +      +       I + +  G+++  N A  K      +     P     ++ 
Sbjct: 350 EELEAQKRSFRDLFNFALSPIMVWSESGVLIQINPAARKELVMENDIETMHPVFKGFKEK 409

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISE 563
               +           +   +          +K+    +   ++    S   +   DI+ 
Sbjct: 410 LMPHLRMAAQGATLTGVNVPI---------GDKVYRWNLSPIRVDGDISGIIVQGQDITT 460

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + + + + A+K AEK +  ++DFLA++SHEIRTP+  I+G ++++K+     +     
Sbjct: 461 LIEAEKQSNLARKEAEKSAQARADFLAKMSHEIRTPINGILGVAQLLKD----SVETEEQ 516

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
               + +  SG  +L ++ND+LD SKIE GK N+   P S  + +    ++ +     K 
Sbjct: 517 NNQIDVLRHSGEHLLAVLNDILDFSKIEQGKFNIQKHPFSFTDTIRTLENIYRPICENKG 576

Query: 684 ILIRTS--FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-----SNEE 736
           + +        N+  I  D   + QI  N++SN++ FTPSG  + +           N  
Sbjct: 577 VNLVIENKIDPNV-EIFTDQVRLNQILFNLVSNSVKFTPSGS-VRLHAELEQFYGAENSV 634

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           +++ + DTG+G+   +L++  +PF Q   +      G+GLGL + K++VD   G   + S
Sbjct: 635 LVVEITDTGIGIEPDKLDQMFEPFVQEEATTTREYGGSGLGLTIVKSLVDMLEGDVQVRS 694

Query: 797 TPAKGTLIEIIFPLYD 812
               GT   I  P+ D
Sbjct: 695 QKGLGTTFVITMPVKD 710


>gi|15901088|ref|NP_345692.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           TIGR4]
 gi|111657844|ref|ZP_01408559.1| hypothetical protein SpneT_02000967 [Streptococcus pneumoniae
           TIGR4]
 gi|5830524|emb|CAB54569.1| histidine kinase [Streptococcus pneumoniae]
 gi|14972707|gb|AAK75332.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           TIGR4]
          Length = 449

 Score =  306 bits (784), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 87/376 (23%), Positives = 166/376 (44%), Gaps = 33/376 (8%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           R+ +  +E E  +L SIL   +DG+   NR G I+  N    K  G   ED+L +     
Sbjct: 83  RLTQENLEQESKRLNSILFYMTDGVLATNRRGQIIMINDTAKKQLGLVKEDVLNRSILEL 142

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SL 556
           L+      +   +         Q+ E +        + L+LR+    +   S +      
Sbjct: 143 LKIEENYELRDLI--------TQSPELLLDSQDINGEYLNLRVRFALIRRESGFISGLVA 194

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            +HD +E ++E+ +                 F++ VSHE+RTPLT++  + E +      
Sbjct: 195 VLHDTTEQEKEERERRL--------------FVSNVSHELRTPLTSVKSYLEALDEGALC 240

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV- 675
               P   ++        N ++ +V DLL +S+I++   +L  E ++    ++  ++   
Sbjct: 241 ETVAP---DFIKVSLDETNRMMRMVTDLLHLSRIDNATSHLDVELINFTAFITFILNRFD 297

Query: 676 --QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
             +    EK+  +   +  N   +  D   + Q+  NIL+NAI ++P GG+I +    T 
Sbjct: 298 KMKGQEKEKKYELVRDYPINSIWMEIDTDKMTQVVDNILNNAIKYSPDGGKITVRMKTTE 357

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
           ++ + L + D G+G+   +L +    F ++  ++     GTGLGL +AK ++  + G  +
Sbjct: 358 DQMI-LSISDHGLGIPKQDLPRIFDRFYRVDRARSRAQGGTGLGLSIAKEIIKQHKGFIW 416

Query: 794 IFSTPAKGTLIEIIFP 809
             S   KG+   I+ P
Sbjct: 417 AKSEYGKGSTFTIVLP 432


>gi|315280742|ref|ZP_07869555.1| sensor protein kinase WalK [Listeria marthii FSL S4-120]
 gi|313615610|gb|EFR88942.1| sensor protein kinase WalK [Listeria marthii FSL S4-120]
          Length = 610

 Score =  306 bits (784), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 80/398 (20%), Positives = 167/398 (41%), Gaps = 29/398 (7%)

Query: 424 FPENMPQNGIEPEDVDTRINKRKM--EIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
             + + +       +  R+ + +   E E  +L S+L   +DG+   +R G ++  N   
Sbjct: 236 GVDEIGELADSFNTLTKRVQEAQAMTEGERRKLSSVLAYMTDGVIATDRRGKVILINTPA 295

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT-EILSLDLRQTLEKITLGSTKEEKLLS 540
            K+     E    +     L+          +  +      R T +K  +          
Sbjct: 296 EKMLRVKHESANGRSIIDVLDIGDTYQFEDLMEVDGSLTMDRSTFDKPYVLRAN------ 349

Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
             +I ++  F++     +HDI++ ++   +              + DF++ VSHE+RTPL
Sbjct: 350 FSVIQRETGFNNGVIAVLHDITDQEKVDQE--------------RRDFVSNVSHELRTPL 395

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
           T++  + E + +  +          +          ++ +VNDLL +S+++ G+  L   
Sbjct: 396 TSMHSYLEALSDGAW--EDKEIAPRFLEVTQNETERMIRLVNDLLKLSRMDGGREQLEKS 453

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720
            V+  +  +  I   +    ++ I+ +         I  D   V Q+  NI+SNA  ++P
Sbjct: 454 FVNFTDFFNHIIDRFE-MMKKETIMFKRHIPREPVIIEIDEDKVMQVLDNIISNANKYSP 512

Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
            GG+I        + E+ + + D G+G+ + +L      F ++  ++     GTGLGL +
Sbjct: 513 DGGRISFYLKKFED-EIEVSIADEGLGVPDEDLANVFDRFFRVDKARSREMGGTGLGLAI 571

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
           A+ +++A+ G+ +      KGT+I+   P   +  P D
Sbjct: 572 AREVIEAHGGRIWAERNKNKGTIIKFTLP--YSDLPED 607


>gi|113474512|ref|YP_720573.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101]
 gi|110165560|gb|ABG50100.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101]
          Length = 1133

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 77/267 (28%), Positives = 129/267 (48%), Gaps = 10/267 (3%)

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           S+ K+    L    K   +    K +FLA  SHE+RTPL  IIG  E +  +    L N 
Sbjct: 423 SQLKKSFETLEAQNKQLTELDRLKDEFLANTSHELRTPLNGIIGIGEFLLEENTKNL-NS 481

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA-N 680
                   I  S   + ++VND+LD SKI   K+ L    + +   V   I+L ++    
Sbjct: 482 ITTSNLAIIVSSARRLSNLVNDILDFSKIRYHKLELQVRAIDVRIVVESVITLNRVLVGK 541

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-------TS 733
            K + +  +   ++P +LAD   ++QI  N+++NAI FT SG ++ IS +          
Sbjct: 542 NKNLQLTNAIPTDLPPVLADENRLQQILYNLIANAIKFTESG-KVEISASLYSPKEDQDE 600

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
             E+I+ V DTG+G+   +L++  + F Q   S   +  GTGLGL + K +V+   G+ +
Sbjct: 601 ATEIIIMVSDTGIGIPPDQLDRIFESFEQGEGSIIRKYGGTGLGLAVTKELVELQGGRIW 660

Query: 794 IFSTPAKGTLIEIIFPLYDTSHPHDCI 820
           + S    G+   +  P+ +   P+  +
Sbjct: 661 VESEVGVGSRFNVTLPISNQLVPNSSL 687


>gi|50119274|ref|YP_048441.1| aerobic respiration control sensor protein ArcB [Pectobacterium
           atrosepticum SCRI1043]
 gi|49609800|emb|CAG73234.1| aerobic respiration control sensor protein [Pectobacterium
           atrosepticum SCRI1043]
          Length = 789

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 89/440 (20%), Positives = 184/440 (41%), Gaps = 21/440 (4%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L             L  +Q     +     I      +    +  + ++ E
Sbjct: 81  EESRQRLSKLVAKLEEMRHRDLEL-NVQLQENIAQLNQEIADRIKAEEARVLVMSRLKEE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
                  + ++E +   L S L+A+ D +   N E      NRA+  L G   + ++   
Sbjct: 140 MSRREQAQIELEQQSALLRSFLDASPDLVYYRNEEKEFSGCNRAMELLVGKSQKQLIGLT 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII--KKLPFSSCY 554
                  +    +     ++   ++  T E+  +     +    LR +    ++      
Sbjct: 200 PQDVYAPDIAEKVMETDEKVFRHNVSLTYEQWLVYPDGRKACFELRKVPFYDRMGKRHGL 259

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+ ++ L +        S  K+ F++ +SHE+RTPL  I+G S ++ + +
Sbjct: 260 MGFGRDITERKRYQDALEN-------ASRDKTTFISTISHELRTPLNGIVGLSRILLDTQ 312

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                +    +Y   I  S   + +I ND++++ K E  K+ L  +P+     + +  +L
Sbjct: 313 L----DLEQQKYLKTIHVSAITLGNIFNDVIEMDKQERRKVQLDNQPIDFTGFLVDLENL 368

Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSG-----GQIIIS 728
             L A +K + +       +P+ ++ D   ++QI  N+LSNA+ FTP G     G+I++ 
Sbjct: 369 GGLLAEQKGLKLIMDQHQPLPQKVITDGTRLRQILWNLLSNAVKFTPKGEKGEKGEIVVR 428

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDA 787
             H   + +   V D+G+G+   ELEK    + Q+ +    +   G+G+GL ++K +   
Sbjct: 429 VWHEKGDRLRFEVEDSGMGIPADELEKIFAMYYQVKDQHGGKPATGSGIGLAVSKRLAQN 488

Query: 788 NMGKFYIFSTPAKGTLIEII 807
             G  ++ S+  KG+   + 
Sbjct: 489 MGGDIHVSSSQGKGSCFTLT 508



 Score = 42.7 bits (99), Expect = 0.25,   Method: Composition-based stats.
 Identities = 45/383 (11%), Positives = 101/383 (26%), Gaps = 25/383 (6%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN-TWYGKTTLWPIE 153
               +  +   +G    ++IG+   DV      +      + + R N +   +  L   +
Sbjct: 177 FSGCNRAMELLVGKSQKQLIGLTPQDVYAPDIAEKVMETDEKVFRHNVSLTYEQWLVYPD 236

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
           G       +L  +P Y R  +  G  GFG           +   +   +  +        
Sbjct: 237 GRKACF--ELRKVPFYDRMGKRHGLMGFG--RDITERKRYQDALENASRDKTTFISTISH 292

Query: 214 HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK------DDVLKTEKYPLLTSEES 267
                       S+      L ++ +    T + +        +DV++ +K      +  
Sbjct: 293 ELRTPLNGIVGLSRILLDTQLDLEQQKYLKTIHVSAITLGNIFNDVIEMDKQERRKVQLD 352

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
           + P       ++L                 +  + L  +     +       NL    V 
Sbjct: 353 NQPIDFTGFLVDLENLGGLLAEQKGLKLIMDQHQPLPQKVITDGTRLRQILWNLLSNAVK 412

Query: 328 KCPIP-----------FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
             P              +      L +              D++E    +   +      
Sbjct: 413 FTPKGEKGEKGEIVVRVWHEKGDRLRF---EVEDSGMGIPADELEKIFAMYYQVKDQHGG 469

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
                  + L  S R        +H      + S     +    A++    +  +   P 
Sbjct: 470 KPATGSGIGLAVSKRLAQNMGGDIHVSSSQGKGSCFTLTVIAPSADEAGSGLEDDDDLPL 529

Query: 437 DVDTRINKRKMEIEVMQLCSILE 459
                +    +E+ V+   S+LE
Sbjct: 530 PALHVLLVEDIELNVVVARSVLE 552



 Score = 40.0 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 22/226 (9%), Positives = 46/226 (20%), Gaps = 10/226 (4%)

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHT--INLNQYTKKQYFGTLQNNSK 297
           +S + E        L      L       L            LNQ    +          
Sbjct: 73  LSVVVEQLEESRQRLSKLVAKLEEMRHRDLELNVQLQENIAQLNQEIADRIKAEEARVLV 132

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKS 356
            S                ++   L    +D  P   +           N +  LL     
Sbjct: 133 MSRLKEEMSRREQAQIELEQQSALLRSFLDASPDLVYYRNEEKEFSGCNRAMELLVGKSQ 192

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
              I        L      + + A K +           +      + +           
Sbjct: 193 KQLIG-------LTPQDVYAPDIAEKVMETDEKVFRHNVSLTYEQWLVYPDGRKACFELR 245

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
                ++  +     G   +  + +  +  +E       + +   S
Sbjct: 246 KVPFYDRMGKRHGLMGFGRDITERKRYQDALENASRDKTTFISTIS 291


>gi|255528162|ref|ZP_05394988.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           carboxidivorans P7]
 gi|296185529|ref|ZP_06853939.1| PAS domain S-box domain-containing protein [Clostridium
           carboxidivorans P7]
 gi|255508150|gb|EET84564.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           carboxidivorans P7]
 gi|296050363|gb|EFG89787.1| PAS domain S-box domain-containing protein [Clostridium
           carboxidivorans P7]
          Length = 628

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 88/381 (23%), Positives = 168/381 (44%), Gaps = 12/381 (3%)

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV-EDILRKPF 497
             +  +  +         ++E + D I +  R+  ++ TN + +KL G+   ED+  K  
Sbjct: 216 HRKYIEGMLLNNEACYNLLIENSRDAIFVH-RDDKVIFTNESAAKLVGFTKTEDLNEKSI 274

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQ-TLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556
             F   N    +     +I    + +   E+  + S  +  ++                 
Sbjct: 275 LDFTTSNEKDNVKEKFKQIYDKKITRLVFEEKIMRSNGDIVIVKNTSTYFIYEGKQTILS 334

Query: 557 TMHDISEWKQEKNKLSHAKK------IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
            + DI+  KQ +      +K         + +   ++F + +SHE++TPL  I    +V+
Sbjct: 335 ILSDITSEKQVEKLEKDVEKNIKLLNETREFNKMITEFFSNISHELKTPLNVIFSAVQVL 394

Query: 611 KN--QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
                +       +  +Y   + ++   +L ++N+LLDI++ +SG + LH    ++   V
Sbjct: 395 NLYINKNEGENIEKQHKYLKVVKQNCYRLLKLINNLLDITRADSGFLKLHTGRYNIVSVV 454

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
            +    V  Y   K I +          I  D   +++I LN+LSN+I FT  GG+I ++
Sbjct: 455 EDITLSVVSYVESKGINLIFDTDVEEKVINFDADKIERIILNLLSNSIKFTNPGGKIYVN 514

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
            +   N  V + V+DTGVG+   +L+   + FGQ+  + +   EGTG+GL L K+ V+ +
Sbjct: 515 MSDIGNG-VTISVKDTGVGIPEDKLQMIFERFGQVDKTLRRNSEGTGIGLCLVKSFVEMH 573

Query: 789 MGKFYIFSTPAKGTLIEIIFP 809
            G   + S   +G+   I FP
Sbjct: 574 GGTIEVKSKLGEGSEFIIKFP 594


>gi|307634891|gb|ADI84465.2| sensor histidine kinase, HAMP and PAS domain-containing [Geobacter
           sulfurreducens KN400]
          Length = 690

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 83/394 (21%), Positives = 171/394 (43%), Gaps = 38/394 (9%)

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
             S+LE  SD I +++   I+   N+   + FG+  E+++  P +  L       +    
Sbjct: 282 YKSLLEDASDAIVVVDENEIVKMVNKMAEEFFGHSSEEVVGLPLSRMLVLVKTHNIPIVY 341

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLL--SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571
                +   + + +    S  E + +   +      +         + D++  ++    L
Sbjct: 342 NFFQEVGKGRHVAEEIRFSRVEGEQVVGLIHANTVTIGSERLIQAIIRDVTREREILFNL 401

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
             +     + +  K  FL   SHE++TPLT I+G++E+I +   G +     I+    I 
Sbjct: 402 EKSATDLARLNKMKDSFLGIASHELKTPLTVIMGYAELILSDMSGKVDR-NVIDMVQNIS 460

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
            +   + +IV D++DIS I+  ++ L  + V ++  V ++++ ++ + + ++  +     
Sbjct: 461 NAAARLDNIVKDMVDISMIDERRLRLKLDDVDVNRLVEDSMNELRFFVSMRKQKLVGELD 520

Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT--------------------- 730
             +PRI  D   + Q+  N++ NAI FTP GG+I +ST                      
Sbjct: 521 ETVPRIKGDPVRLMQLMSNVIGNAIKFTPDGGRITVSTRTKYLLRSKQAPIPELVKPVVN 580

Query: 731 --HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE-------GTGLGLPLA 781
                +  V + + DTG+G+   +  +    F ++ N ++           G GLGL +A
Sbjct: 581 IGKEQHLYVEITITDTGIGIDMDDQLRIFDKFYEVGNIEEHSSGKVAFKARGAGLGLSIA 640

Query: 782 KAMVDANMGKFYIFS---TPAK--GTLIEIIFPL 810
           K +V+ + G+ ++ S    P +  G+   I+ PL
Sbjct: 641 KGIVEMHGGEIWVESPGYNPEQFPGSTFHIVLPL 674


>gi|46581671|ref|YP_012479.1| sensory box histidine kinase/response regulator [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|46451094|gb|AAS97739.1| sensory box histidine kinase/response regulator [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|311235311|gb|ADP88165.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris
           RCH1]
          Length = 839

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 112/639 (17%), Positives = 235/639 (36%), Gaps = 30/639 (4%)

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY 246
            R +ND     +        + ++   +         +F  +           V  L + 
Sbjct: 48  ARHENDLLKAMRIASPVPLCVKDVHGRYLGCNHAFELLFGVREADILGGTAAGV--LPQP 105

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS-KESFEYLSH 305
            A  +   +       TS ++ +   E      L        +         +   Y   
Sbjct: 106 LAAGESAAEENMARFGTSRQTFMSAYESPGGPALVLQVDCATWRDASGVHKGQVNAYADI 165

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAG 364
                  A   E E      V++ PI    +   G++ + N   L +     VD      
Sbjct: 166 TPLKRAEAALHESEARNRMLVEEAPISIMSFDAAGHITFVNKWHLRVFCRHRVDA--GFF 223

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
               L   P L+     + V                       +   ++  +P     + 
Sbjct: 224 IGRRLDALPGLARAGLCERVARVLHGEELAIREVYFPEFTGGHDGWASIRGVPIH---RD 280

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
            + +    I  +  + +  +  +      + S+L          + EG +L  +    ++
Sbjct: 281 GQIVGGILIREDITERKRMEEVLRQREALVSSMLRNLPIDFWAADGEGRMLMQSDESVRV 340

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
           +G+    +     +    +N+                 +T+E+    +    ++ +  +I
Sbjct: 341 WGHLPSGVEPLTGSPLQWRNSDRFEPRVFAG-------ETVEREIDVALPSGQMRTFNVI 393

Query: 545 IKKLPFSSCYSLTMH---DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
              +      +  +    D++E K+   +L  A+  AE  +  KS+FLA +SHE+RTPL 
Sbjct: 394 AAPVRLQGGITAMLRVNLDVTERKRVLAELRTARDAAEAANKAKSEFLAHMSHELRTPLN 453

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
            ++G  + + ++       P+   + +    S   +L I++D+LD+S+IE+G+++L  EP
Sbjct: 454 GVMGMLQ-LLDEHVAA---PQGRAWLDVALESSRALLRILSDILDLSRIEAGRLDLMQEP 509

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTP 720
            + +  ++  +  +      + + I     +++P +L  D   ++Q+ LN+L NA  +T 
Sbjct: 510 FTPESVLAPVLVSLHRTVEGRAVRIVNEMDDSMPPVLVGDPGRIRQVLLNLLGNAAKYTE 569

Query: 721 SGGQIIISTTHTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
            G ++ +             V L V DTGVG+ + +L++A++PFG++         G GL
Sbjct: 570 RG-EVRVGMRVLRRNGKALRVHLHVTDTGVGIADEQLQRALEPFGRLRQG-SGLPRGVGL 627

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
           GLP+   +V    G   I S    GT + +  PL +   
Sbjct: 628 GLPIVVRLVRLMGGTLCIASEQGVGTEVHVTLPLLEADA 666



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/400 (8%), Positives = 89/400 (22%), Gaps = 22/400 (5%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY--GKT 147
           D HG     +       G     ++G     V         +   + + R  T      +
Sbjct: 70  DVHGRYLGCNHAFELLFGVREADILGGTAAGVLPQPLAAGESAAEENMARFGTSRQTFMS 129

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                 G  L + +D         +                      A     + +   L
Sbjct: 130 AYESPGGPALVLQVD--CATWRDASG--VHKGQVNAYADITPLKRAEAALHESEARNRML 185

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS-------SLTEYYAHKDDVLKTEKYP 260
            E              I         +  +++V         L          L      
Sbjct: 186 VEEAPISIMSFDAAGHITFVNKWHLRVFCRHRVDAGFFIGRRLDALPGLARAGLCERVAR 245

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL---SHRNHPSLSAYFDE 317
           +L  EE ++ E         +          +  + +     L          +     +
Sbjct: 246 VLHGEELAIREVYFPEFTGGHDGWASIRGVPIHRDGQIVGGILIREDITERKRMEEVLRQ 305

Query: 318 GENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKY--KSVDDIEIAGGLST---LLD 371
            E L    +   PI F+     G +   +   + +  +    V+ +  +          +
Sbjct: 306 REALVSSMLRNLPIDFWAADGEGRMLMQSDESVRVWGHLPSGVEPLTGSPLQWRNSDRFE 365

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
               +     + + +          +     ++     +  +         +      + 
Sbjct: 366 PRVFAGETVEREIDVALPSGQMRTFNVIAAPVRLQGGITAMLRVNLDVTERKRVLAELRT 425

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471
             +  +   +     +     +L + L      + +++  
Sbjct: 426 ARDAAEAANKAKSEFLAHMSHELRTPLNGVMGMLQLLDEH 465



 Score = 39.2 bits (90), Expect = 2.9,   Method: Composition-based stats.
 Identities = 34/264 (12%), Positives = 70/264 (26%), Gaps = 24/264 (9%)

Query: 81  RTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ 140
             + F W  D  G +   S+E  +  G+      G+     S +   + +     +   +
Sbjct: 317 LPIDF-WAADGEGRMLMQSDESVRVWGHLPS---GVEPLTGSPLQWRNSDRFEPRVFAGE 372

Query: 141 NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
                     P   +      ++ A P+          +G GI  + RV+ D     + L
Sbjct: 373 TVEREIDVALP---SGQMRTFNVIAAPVR--------LQG-GITAMLRVNLDVTERKRVL 420

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
            +  +     +  + +  +    +  +   P +  M           A +          
Sbjct: 421 AELRTARDAAEAANKAKSEFLAHMSHELRTPLNGVMGMLQLLDEHVAAPQGRAWLDVALE 480

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
              +    L +  D   I   +    Q   T ++        L                 
Sbjct: 481 SSRALLRILSDILDLSRIEAGRLDLMQEPFTPESVLAPVLVSLHRTVEGRA-------VR 533

Query: 321 LTPETVDKCPIPFFVYSHGNLFYA 344
           +  E  D  P P  V   G +   
Sbjct: 534 IVNEMDDSMP-PVLVGDPGRIRQV 556


>gi|186685129|ref|YP_001868325.1| multi-sensor signal transduction histidine kinase [Nostoc
           punctiforme PCC 73102]
 gi|186467581|gb|ACC83382.1| multi-sensor signal transduction histidine kinase [Nostoc
           punctiforme PCC 73102]
          Length = 511

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 80/393 (20%), Positives = 171/393 (43%), Gaps = 41/393 (10%)

Query: 439 DTRINKRKMEIE-------VMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVE 490
             +    +++ E         +   +  ++ + IAI        +  N +  K+ GY ++
Sbjct: 136 QLQAQNERLQQEIHDRAKAEEKFAKVFRSSPNPIAIATVSNARFIDVNPSFLKMSGYSLD 195

Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
           +++    T          +   +  +        LE        E K + + + +  L  
Sbjct: 196 EVIGNTATELNLGKNTVAIAQTIQLLPETGSLYNLEFEFSTKCAELKTVLISLELIDLAG 255

Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
             C  L  +DI+E K+ +                 ++F++ VSHE+RTPLT+ +G  +++
Sbjct: 256 VPCALLIANDITERKRLE-----------------NEFISLVSHELRTPLTSTMGALDLL 298

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
            +++ G L N +  +  +    +   ++ +VND+LD+ +++SGK+       +  + ++ 
Sbjct: 299 GSEQLGTL-NEQGQKVLSIATTNTERLIRLVNDILDLERMKSGKIFTRKMKYNAADLLTT 357

Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
           A   +Q  A+  ++ ++         + AD   + Q   N+LSNAI F+  G  + IS T
Sbjct: 358 ATEAMQAMAD--QLQVKLIINPVEVELWADPDRLLQTLTNLLSNAIKFSEPGDTVYISAT 415

Query: 731 HTSNEEVI-------------LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
            + ++ V              + ++D G G+   +L+   + F Q+  S      GTGLG
Sbjct: 416 LSESQGVEPKENEPLLPKYLLITIKDQGRGIPEDKLQIIFERFQQVDASDSRNKGGTGLG 475

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           L + + ++  + GK ++ ST  +G+   ++ PL
Sbjct: 476 LAICRDIIQQHDGKIWVQSTLGEGSTFYVLLPL 508


>gi|270488524|ref|ZP_06205598.1| PAS domain S-box [Yersinia pestis KIM D27]
 gi|270337028|gb|EFA47805.1| PAS domain S-box [Yersinia pestis KIM D27]
          Length = 796

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 79/374 (21%), Positives = 162/374 (43%), Gaps = 16/374 (4%)

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
                + ++  +   L S L+A+ D +   N +      NRA+  L G   + ++     
Sbjct: 142 HREQAQIELGQQSALLRSFLDASPDLVYYRNEDNEFSGCNRAMELLTGKSEKQLVGLTPK 201

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII--KKLPFSSCYSL 556
                +    +     ++   ++  T E+  +     +    LR +    ++        
Sbjct: 202 DVYAPDIAEKVMETDEKVFRHNVSLTYEQWLVYPDGRKACFELRKVPFYDRVGKRHGLMG 261

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
              DI+E K+ ++ L +        S  K+ F++ +SHE+RTPL  I+G S ++ +    
Sbjct: 262 FGRDITERKRYQDALEN-------ASRDKTTFISTISHELRTPLNGIVGLSRILLDTEL- 313

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
              +   ++Y   I  S   + +I ND++++ K+E  K+ L  +PV     +++  +L  
Sbjct: 314 ---DAEQLKYLKTIHVSAITLGNIFNDIIEMDKLERRKVQLDNQPVDFTGFMADLENLSG 370

Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
           L    K +         +P  ++AD   ++QI  N++ NA+ FT  G +I++      N+
Sbjct: 371 LLVQPKGLKFIMEPQLPLPEKVIADGTRLRQILWNLIGNAVKFTQQG-KIVVRVRREGND 429

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQI-PNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
            +I  V D+G+G+   E +K    + Q+   +      GTG+GL ++K +  +  G   +
Sbjct: 430 RLIFEVEDSGMGIPEDEQDKIFAMYYQVKDRNGGRPATGTGIGLAVSKRLAQSMGGDITV 489

Query: 795 FSTPAKGTLIEIIF 808
            ST   G+   +  
Sbjct: 490 KSTQGVGSCFTLTI 503



 Score = 41.6 bits (96), Expect = 0.58,   Method: Composition-based stats.
 Identities = 16/124 (12%), Positives = 35/124 (28%), Gaps = 5/124 (4%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN-TWYGKTTLWPIE 153
               +  +    G    +++G+   DV      +      + + R N +   +  L   +
Sbjct: 177 FSGCNRAMELLTGKSEKQLVGLTPKDVYAPDIAEKVMETDEKVFRHNVSLTYEQWLVYPD 236

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
           G       +L  +P Y R  +  G  GFG           +   +   +  +        
Sbjct: 237 GRKACF--ELRKVPFYDRVGKRHGLMGFG--RDITERKRYQDALENASRDKTTFISTISH 292

Query: 214 HSSV 217
               
Sbjct: 293 ELRT 296



 Score = 39.6 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 23/228 (10%), Positives = 55/228 (24%), Gaps = 14/228 (6%)

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ----EDFHTINLNQYTKKQYFGTLQNN 295
           +S + E        L      L       L       E+   +N     +++        
Sbjct: 73  LSVVVEQLEESRQRLSRLVDKLEVMRHRDLELNKQLTENITQLNQEIVEREKAEKAHLQV 132

Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKY 354
             +  E + HR    +     +   L    +D  P   +  +        N +  LLT  
Sbjct: 133 VDKLKEEMGHREQAQIE--LGQQSALLRSFLDASPDLVYYRNEDNEFSGCNRAMELLTGK 190

Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
                +        L      + + A K +           +      + +         
Sbjct: 191 SEKQLVG-------LTPKDVYAPDIAEKVMETDEKVFRHNVSLTYEQWLVYPDGRKACFE 243

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
                  ++  +     G   +  + +  +  +E       + +   S
Sbjct: 244 LRKVPFYDRVGKRHGLMGFGRDITERKRYQDALENASRDKTTFISTIS 291


>gi|26988825|ref|NP_744250.1| two-component sensor protein [Pseudomonas putida KT2440]
 gi|24983627|gb|AAN67714.1|AE016402_6 two-component sensor protein [Pseudomonas putida KT2440]
          Length = 1211

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 121/677 (17%), Positives = 233/677 (34%), Gaps = 40/677 (5%)

Query: 149 LWPIEGTNLYVPIDLAALPI--YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
            W  +   + V  D AA P+  +  +  F G            D       +   +    
Sbjct: 296 QWLEKHPVMRVAADDAAAPLSYFDDSGHFRG---------ITADLLELIRLRTGLRFEVQ 346

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
                    +  K+                 +   S     +    V   +   L + E+
Sbjct: 347 RASGIADMVARLKDGRADVIAALASAGKAGDDLQISRPYLESAYVLVNHKDNNALSSLEQ 406

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
                        +N    + Y       ++ +F  ++  N  ++ A      +      
Sbjct: 407 LQGHRIAITRYSTMNAMLSRDYPKISWVETESAFYSMALLNSGAVDAVITTLIDANHALA 466

Query: 327 DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
              P      S G+   AN +   +        +      + L  +P+       +    
Sbjct: 467 SN-PELVIRTSVGS-EPANFAMATI---APSPALLSILDKALLSISPEELGVINNRWRGF 521

Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
            R +                  + LA+  +           +    +  +    +  +R 
Sbjct: 522 GRHEDDN-----------SKGYSRLALQVVLATAVLLLLALLWNARLRLQIRQRQRAERA 570

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF--TVFLEQN 504
           +  ++  + ++L  T   + + +REG + S N +  +      + ++ K    ++F +  
Sbjct: 571 LNDQLAFMRALLNGTPHPMYVRDREGCLKSCNYSYLEAVQARSDQVIGKKLKDSLFADSE 630

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL-SLRIIIKKLPFSSCYSLTMHDISE 563
               +     ++++       ++      ++  +   +      L           DISE
Sbjct: 631 QARQIQADYQKVMAAGSPLIKDRPLRIKGRDLTIYHWILPYRDSLGEVQGIIGGWIDISE 690

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            +Q   +L  AK+ A+  +  KS FLA +SHEIRTP+ A+IG  E+   +      +   
Sbjct: 691 RRQLVLELRQAKQQADDANRAKSTFLATISHEIRTPMNAVIGMLELAVKRADQGRVD--- 747

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
                    S   +L ++ D+LDI +IESG ++L  E V L   V     +    A +K 
Sbjct: 748 RSALELAHHSAKDLLGLIGDILDIVRIESGHLSLAPEVVDLAALVESVARIFDGQARQKG 807

Query: 684 ILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-----V 737
           + +    A      +L D    KQ+  N++SNAI FT  G Q+ IS     +       +
Sbjct: 808 LALEVQIAPAARCHVLLDPLRFKQVLSNLVSNAIKFTEHG-QVRISVRLLDDGTSTPAVL 866

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
            L VRD+G+G+   +L++   PF Q     Q    GTGLGL + + + +   G   + S 
Sbjct: 867 ELEVRDSGIGIHPDDLQRLFNPFIQANPHSQGARAGTGLGLAICRNLCEMMGGSLSMKSL 926

Query: 798 PAKGTLIEIIFPLYDTS 814
              GT + +  PL    
Sbjct: 927 EDVGTQVRLKMPLQRVD 943



 Score = 40.0 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 30/251 (11%), Positives = 67/251 (26%), Gaps = 22/251 (8%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD----LLKRQNTWYG 145
           D  G LK  +    + +   + ++IG +L D S     +    I      ++   +    
Sbjct: 593 DREGCLKSCNYSYLEAVQARSDQVIGKKLKD-SLFADSEQARQIQADYQKVMAAGSPLI- 650

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           K     I+G +L +   +  LP      E  G  G  I              ++  ++  
Sbjct: 651 KDRPLRIKGRDLTIYHWI--LPYRDSLGEVQGIIGGWI--DISERRQLVLELRQAKQQAD 706

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
             +  K    +    +                  V  + E    + D  + ++  L  + 
Sbjct: 707 DANRAKSTFLATISHEIRTPMNA-----------VIGMLELAVKRADQGRVDRSALELAH 755

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
            S+         I      +  +  +L     +    +             +G  L  + 
Sbjct: 756 HSAKDLLGLIGDILDIVRIESGHL-SLAPEVVDLAALVESVARIFDGQARQKGLALEVQI 814

Query: 326 VDKCPIPFFVY 336
                    + 
Sbjct: 815 APAARCHVLLD 825


>gi|226357941|ref|YP_002787681.1| histidine kinase, classic [Deinococcus deserti VCD115]
 gi|226320184|gb|ACO48177.1| putative histidine kinase, classic [Deinococcus deserti VCD115]
          Length = 944

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 82/658 (12%), Positives = 208/658 (31%), Gaps = 47/658 (7%)

Query: 190 DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH 249
             D R   +R         +I    +   +   +  S          +       +    
Sbjct: 299 KQDARMNERRFQSLVQASAQIVWSCTPHGEFPGEQPSWSRFTGQNAEQQLGRGWLDAIHP 358

Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
            D     + +      +     Q      +      +     + +++ +  E++      
Sbjct: 359 DDRKDVLQAWMRAVETQCLYEVQHRLRRHDGQYRFMQARATPVLSDNGQLVEWIGTHEDV 418

Query: 310 S----LSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364
           +          E E      V+        +   G     NP+      Y S + +    
Sbjct: 419 TERHEAEMQLREREERYRALVEYTIAGVTRISLDGTFIDVNPAAAAFLGY-SQEQLAGMS 477

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
                       D+       L R     +AA+             +          ++ 
Sbjct: 478 VKDVT-----HPDDLNDTFAALGRVLSGEVAATTLEKRYVRGDGTIVWSNSGVTVVRSET 532

Query: 425 PENMPQNGIEPEDVDTRINKRKM------------------EIEVMQLCSILEATSDGIA 466
            E      +     + ++ + ++                  E E   L ++LE+ ++GI 
Sbjct: 533 GEPQYIIAVISNITERKLAEAELHRLNLELETRVRDRTRDLEQERRFLRALLESLAEGIV 592

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY------LTEILSLD 520
             +  G +   N A ++ FG P   +    +           +         L   LS +
Sbjct: 593 ACDAHGQVNLFNDASTRFFGLPAAPLRPIEWPAHFGLYQLDGLTPLSVEEVPLYRALSGE 652

Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIA 578
             +    +        + ++        P        + +HD++  ++ +  +    +  
Sbjct: 653 QVRDQPIVIAPERAPRRYVTASGSAIFGPGGEKLGAVVALHDVTAQREAEQAVERVTQDL 712

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
           ++ ++  + F A  SH+++ PL  I    + +  +R+G   + +     ++   + N + 
Sbjct: 713 KRSNAELTRFAAVASHDLKAPLRTIGSQLQ-LLQRRYGGQLDEKADRMISFTVEAANRMD 771

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
            +++DLL  +++   +       V+    + + ++ +      +   +      ++P + 
Sbjct: 772 ALIDDLLAYAQLGQQR---RVTDVNAHLVMQDVLANLDATIQARNAHVSV---GHLPWVK 825

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIIST-THTSNEEVILRVRDTGVGMTNYELEKAM 757
           AD    +QI  N++ NA+ F P+G    +          V   V+D G+G+     ++  
Sbjct: 826 ADETLFRQILQNLVGNALKFQPTGRAPRVRVSAIQERAFVHFTVKDNGIGIAPAYFDQIF 885

Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
           + F ++  +      G+GLGL + +  ++   G+ ++ ST  +G       P    + 
Sbjct: 886 EVFHRLHAA--SVYPGSGLGLAIVRKSIEEQDGRIWVESTEGEGAAFHFTLPAAKVTA 941



 Score =  118 bits (295), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 55/562 (9%), Positives = 132/562 (23%), Gaps = 63/562 (11%)

Query: 79  IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI-GDLL 137
                  TW +D  G +   ++     +      ++     +       D   H      
Sbjct: 20  DALPSP-TWILDGQGTIIFANKAYQVQLRLPEMPVLRQHFTEFLGAHQQDAGAHAWRHAQ 78

Query: 138 KRQNTWYGKTTLWPIE----------------GTNLYVPIDLAALPIYSRNREFSGFRGF 181
             +  +       P+E                G +    + L  L               
Sbjct: 79  DTRAPFA-LELQLPLEQGNDCVLAQAQFSYLTGFDDQWLVTLTPLQTDDVEHHELLTALD 137

Query: 182 GIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHS---------------SVEKEKYDIFS 226
            I        D   L + +      L   + G                 S+     D F 
Sbjct: 138 QINEAISAQLDEEGLAQTVTDAAVRLTCAQCGVFIYTLKDQRGEQLPQYSLSGVPKDTFV 197

Query: 227 QQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTK- 285
                                   D             E            + +   ++ 
Sbjct: 198 NSPLHHMASAFAPKVDDRGILRADDITQDARFGRAPACEAMPQGSLAVRSFLAIPAISRS 257

Query: 286 ----------KQYFGTLQNNSKESFEYLSHRNHPSLS-----AYFDEGENLTPETVDKCP 330
                      +  G     S+     ++ +   +L            E      V    
Sbjct: 258 GEVIGRFFFSHERPGIFNGRSERLATIIAAQAASALDNTQLKQDARMNERRFQSLVQASA 317

Query: 331 IPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389
              +  +  G      PS+   T   +   +   G L  +         + ++  M    
Sbjct: 318 QIVWSCTPHGEFPGEQPSWSRFTGQNAEQQL-GRGWLDAIHPDD---RKDVLQAWMRAVE 373

Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449
            +         H ++ +      M        +   + +   G   +  +    + ++  
Sbjct: 374 TQCLYEVQ---HRLRRHDGQYRFMQARATPVLSDNGQLVEWIGTHEDVTERHEAEMQLRE 430

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
              +  +++E T  G+  I+ +G  +  N A +   GY  E +           +  +  
Sbjct: 431 REERYRALVEYTIAGVTRISLDGTFIDVNPAAAAFLGYSQEQLAGMSVKDVTHPDDLNDT 490

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLS----LRIIIKKLPFSSCYSLTMHDISEWK 565
              L  +LS ++  T          +  ++     + ++  +          + +I+E K
Sbjct: 491 FAALGRVLSGEVAAT-TLEKRYVRGDGTIVWSNSGVTVVRSETGEPQYIIAVISNITERK 549

Query: 566 QEKNKLSHAKKIAEKESSHKSD 587
             + +L       E     ++ 
Sbjct: 550 LAEAELHRLNLELETRVRDRTR 571



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 39/404 (9%), Positives = 102/404 (25%), Gaps = 38/404 (9%)

Query: 83  VRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI-DPNNHIGDLLKRQN 141
            +  W+   HG          +  G  A + +G    D        D        ++ Q 
Sbjct: 317 AQIVWSCTPHGEFPGEQPSWSRFTGQNAEQQLGRGWLDAIHPDDRKDVLQAWMRAVETQC 376

Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
            +  +  L   +G   Y  +   A P+ S N +       G        ++     +  +
Sbjct: 377 LYEVQHRLRRHDG--QYRFMQARATPVLSDNGQLV--EWIGTHEDVTERHEAEMQLRERE 432

Query: 202 KKFSHLHEIKKGHS---SVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
           +++  L E         S++    D+    +       +       +   H DD+  T  
Sbjct: 433 ERYRALVEYTIAGVTRISLDGTFIDVNPAAAAFLGYSQEQLAGMSVKDVTHPDDLNDTFA 492

Query: 259 Y--PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF- 315
               +L+ E ++   ++ +   +            +++ + E    ++  ++ +      
Sbjct: 493 ALGRVLSGEVAATTLEKRYVRGDGTIVWSNSGVTVVRSETGEPQYIIAVISNITERKLAE 552

Query: 316 ---------------------DEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTK 353
                                ++        ++            G +   N +      
Sbjct: 553 AELHRLNLELETRVRDRTRDLEQERRFLRALLESLAEGIVACDAHGQVNLFNDASTRFFG 612

Query: 354 YKSVDDIEIAGGLST--LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411
                 +      +   L     L+  +  +  +             +   I   R    
Sbjct: 613 L-PAAPLRPIEWPAHFGLYQLDGLTPLSVEEVPLYRALSGEQ--VRDQPIVIAPERAPRR 669

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
            +T           E +       +    R  ++ +E     L 
Sbjct: 670 YVTASGSAIFGPGGEKLGAVVALHDVTAQREAEQAVERVTQDLK 713



 Score = 65.4 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 33/354 (9%), Positives = 89/354 (25%), Gaps = 17/354 (4%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI-DPNNHIGDLLKRQNTWYGK 146
            I   G   +++      +G    ++ GM + DV+    + D    +G +L  +      
Sbjct: 448 RISLDGTFIDVNPAAAAFLGYSQEQLAGMSVKDVTHPDDLNDTFAALGRVLSGEVAATTL 507

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
              + + G    V  +     + S   E        ++          A   RL+ +   
Sbjct: 508 EKRY-VRGDGTIVWSNSGVTVVRSETGEPQYI--IAVISNITERKLAEAELHRLNLELET 564

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
               +      E+       +            V+       +  +   T  + L  +  
Sbjct: 565 RVRDRTRDLEQERRFLRALLESLAEGI------VACDAHGQVNLFNDASTRFFGLPAAPL 618

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
             +     F    L+  T           +    +        +           +   +
Sbjct: 619 RPIEWPAHFGLYQLDGLTPLSVEEVPLYRALSGEQVRDQPIVIAPERAPRRYVTASGSAI 678

Query: 327 -----DKCPIPFFVYSHGNLFYANPSFLLLTKY--KSVDDIEIAGGLSTLLDAPKLSDNN 379
                +K      ++       A  +   +T+   +S  ++     +++      L    
Sbjct: 679 FGPGGEKLGAVVALHDVTAQREAEQAVERVTQDLKRSNAELTRFAAVASHDLKAPLRTIG 738

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
           +   ++  R        + R+ +      N +           Q  +      +
Sbjct: 739 SQLQLLQRRYGGQLDEKADRMISFTVEAANRMDALIDDLLAYAQLGQQRRVTDV 792



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 45/131 (34%), Gaps = 3/131 (2%)

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           ++L+A      I++ +G I+  N+A       P   +LR+ FT FL  +      H    
Sbjct: 17  TLLDALPSPTWILDGQGTIIFANKAYQVQLRLPEMPVLRQHFTEFLGAHQQDAGAHAWRH 76

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575
                    LE         + +L+         F   + +T+   +  + +  +     
Sbjct: 77  AQDTRAPFALELQLPLEQGNDCVLAQAQFSYLTGFDDQWLVTL---TPLQTDDVEHHELL 133

Query: 576 KIAEKESSHKS 586
              ++ +   S
Sbjct: 134 TALDQINEAIS 144



 Score = 38.1 bits (87), Expect = 6.1,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 53/169 (31%), Gaps = 18/169 (10%)

Query: 319 ENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
           E L    +D  P P ++    G + +AN ++ +  +   +  +      +  L A +   
Sbjct: 12  EPLQGTLLDALPSPTWILDGQGTIIFANKAYQVQLRLPEMPVLRQ--HFTEFLGAHQ--Q 67

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
           +         +  R   A   +L   Q N        F      +             + 
Sbjct: 68  DAGAHAWRHAQDTRAPFALELQLPLEQGNDCVLAQAQFSYLTGFDDQWLVTLTPLQTDDV 127

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGI-AIINREGIILSTNRAVSKLF 485
                       E  +L + L+  ++ I A ++ EG+  +   A  +L 
Sbjct: 128 ------------EHHELLTALDQINEAISAQLDEEGLAQTVTDAAVRLT 164


>gi|170078014|ref|YP_001734652.1| signal transduction histidine kinase [Synechococcus sp. PCC 7002]
 gi|169885683|gb|ACA99396.1| signal transduction histidine kinase [Synechococcus sp. PCC 7002]
          Length = 672

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 82/393 (20%), Positives = 170/393 (43%), Gaps = 46/393 (11%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            ++  E  +L +++   +DG  +++ +  I+  N    K+F +  + I+       L  +
Sbjct: 269 EELTSEKAKLETLVTTIADGAILLDTDLKIILANPTARKIFHWDEKSIIGTTVLHHLPAS 328

Query: 505 TPSVMNHYLTEILSLD------------LRQTLEKITLGST------------KEEKLLS 540
             + +   L +I + +            ++   E+I  G+              E   + 
Sbjct: 329 VTTQITRPLHQIAAGENLDSDFLIEHHAVQGNAEEIIRGNEFKITLEDMVDNVAEATTIR 388

Query: 541 LRIIIKKLP---FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
           + +              ++T+ DI+  K+ +             +  KS F++ VSHE+R
Sbjct: 389 ILLTEVLDKSKINVRGIAITVQDIT--KEAE------------LNKAKSQFISNVSHELR 434

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TPL  I  F E + ++    L   +  ++    +   + +  +VND+LD+S++ES ++  
Sbjct: 435 TPLFNIKSFIETL-HEYGDDLTEQQRQDFLETANNETDRLTRLVNDVLDLSRLESSRV-Y 492

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
             + V + + + + +   QL A +K I +    A ++P IL     + Q+  N++ NA+ 
Sbjct: 493 RLDEVDISQPIEQTLRTHQLNARDKEITLTHELATDLPMILGHYDLLLQVLTNLVGNALK 552

Query: 718 FTPSGGQIIIST--THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           FT +GG + +         E V + + DTG+G+   + E     F ++ N +    EGTG
Sbjct: 553 FTQAGGCVSVRAYPVPHDPERVRIEISDTGIGIDPEDQEAIFDRFFRVEN-RVHTLEGTG 611

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           LGL + K ++D +  + ++ S    GT      
Sbjct: 612 LGLSIVKNIIDKHNSRIHLISEVGIGTTFWFEL 644


>gi|207721961|ref|YP_002252399.1| composite two component regulatory protein (sensor histidine kinase
           and response regulator hybrid) [Ralstonia solanacearum
           MolK2]
 gi|206587133|emb|CAQ17717.1| composite two component regulatory protein (sensor histidine kinase
           and response regulator hybrid) [Ralstonia solanacearum
           MolK2]
          Length = 875

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 100/618 (16%), Positives = 196/618 (31%), Gaps = 33/618 (5%)

Query: 220 EKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTIN 279
                  +++    L     ++ LT     + D        +      S           
Sbjct: 11  AAPVHLWRRAGTALLLCATAIALLTASDYTQADDATRALRQMGPPPAPSAAAPMARCAPA 70

Query: 280 LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH- 338
                      ++++           R      A      +     ++  P P       
Sbjct: 71  AAIVLWTLTVLSIRHMQLRRET----RQRRHTEATLARQLDFQHMLMESLPFPLAAQDTQ 126

Query: 339 GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398
                 N +F  L        +        L      +            +       + 
Sbjct: 127 HRYVAVNAAFCHLFGRSREAVLGRTPA--HLGLGCARTTACVQDIDRRAVATGQDAREAL 184

Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458
            +          L           Q    +          + R  + + + +  +L   +
Sbjct: 185 TITAADGRERRVLYWVAPLRLPDGQPGGTVASLIDLSNLSEIREAQARAKRQAQRLHDSI 244

Query: 459 EATSDGIAII-----NREGIILSTNRAVSKLFGYPVEDILRK--PFTVFLEQNTPSVMNH 511
           E+    +  +        G I     +  +  G   +            + Q+    M+ 
Sbjct: 245 ESLPALVCQVEMRPGTTRGRIRYMAGSARETLGAQTDAAPFLLPSPARLVHQDDRRRMHD 304

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---YSLTMHDISEWKQEK 568
               + S      L++       +  +  L               ++  + D+++ +   
Sbjct: 305 A--ALQSATQLTPLDQPFRHVGGDGSVRWLHAHALPHREPDGRTVWTGYLRDVTQERARA 362

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
           + L  A++ AE     K  FLA +SHEIRTP+  ++G  E++                  
Sbjct: 363 DALEAARQAAESALHAKDRFLATMSHEIRTPMNGVLGLVELLLQTPLER----EQQRMVT 418

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
               S   +L I++D+LD +KIE+G + +   P  L E     + L+   A+E+ + +R 
Sbjct: 419 LAQESSRALLHILDDILDYAKIEAGHLAVTPAPTDLRELFDSTVGLLASRAHERSLSVRV 478

Query: 689 SFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH----TSNEEVILRVRD 743
                +P  +  D   ++Q+  N+LSNAI FT  G  + +S       T    +I+R+ D
Sbjct: 479 EVDAAVPATVSVDGMRLRQVLSNLLSNAIKFTERGS-VHLSAACVGAATDTAHLIIRIAD 537

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TG+G+          PF Q  +    R  GTGLGL +++ +     G   + STP  GT 
Sbjct: 538 TGIGIAPEAQATLFTPFVQADSPAARRHGGTGLGLAISRQLARLMGGSLDMDSTPGVGTT 597

Query: 804 IEIIF--PLYDTSH--PH 817
           + +    P+ +  +  PH
Sbjct: 598 LTLRLETPVINARYRRPH 615



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/255 (9%), Positives = 55/255 (21%), Gaps = 17/255 (6%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS---DILHIDPNNHIGDLLKRQNTWYGK 146
           D       ++       G     ++G     +            +     +         
Sbjct: 124 DTQHRYVAVNAAFCHLFGRSREAVLGRTPAHLGLGCARTTACVQDIDRRAVATGQDAREA 183

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI-----VHVNRVDNDPRALGKRLD 201
            T+   +G    V   +A  P+   + +  G     I       +       +   +RL 
Sbjct: 184 LTITAADGRERRVLYWVA--PLRLPDGQPGGTVASLIDLSNLSEIREAQARAKRQAQRLH 241

Query: 202 KKFSHLHEIKKGH---SSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK--DDVLKT 256
                L  +           + +    +  +        +    L    A     D  + 
Sbjct: 242 DSIESLPALVCQVEMRPGTTRGRIRYMAGSARETLGAQTDAAPFLLPSPARLVHQDDRRR 301

Query: 257 EKYPLLTSEESSLPEQEDFHTI--NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
                L S     P  + F  +  + +      +    +     +      R+     A 
Sbjct: 302 MHDAALQSATQLTPLDQPFRHVGGDGSVRWLHAHALPHREPDGRTVWTGYLRDVTQERAR 361

Query: 315 FDEGENLTPETVDKC 329
            D  E          
Sbjct: 362 ADALEAARQAAESAL 376


>gi|73539664|ref|YP_300031.1| PAS/PAC sensor hybrid histidine kinase [Ralstonia eutropha JMP134]
 gi|72123001|gb|AAZ65187.1| PAS/PAC sensor hybrid histidine kinase [Ralstonia eutropha JMP134]
          Length = 948

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 101/522 (19%), Positives = 196/522 (37%), Gaps = 31/522 (5%)

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIA 363
                   A       L    +   P P             NP+F         D +   
Sbjct: 106 ITQRTKAEAKLGHELALRKALLACLPEPVAAKDPDLRYIELNPAFEHFFGIAKADAM--- 162

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
            G   L               +   + RT     ARL  ++     S  + F      N 
Sbjct: 163 -GRHALEVESLRERMTGDLLGLQDEAIRTMEPRQARLQ-MRNASGQSRRVNFWALPFRNP 220

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA-------IINREGIILS 476
                    +  +  D   ++ + +    +L  ++++    +          +R   +  
Sbjct: 221 DGMPGGIVTVHFDVTDIDESRERAQAFERRLKDVVDSLPVTVFQSRLPQDASDRGWEVTY 280

Query: 477 TNRAVSKLFGYPVEDILRK----PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
              A     G  ++ +         +          +   + E         +E      
Sbjct: 281 ---AAGDGVGRGIDTVAALGAAPSDSTAFCPQDRPRLRAAILESARTCQPLDVEGRL-NR 336

Query: 533 TKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
                 + +R + ++    + ++  + D+++  ++   L  AK  AE +   K  FLA +
Sbjct: 337 GPAPGWIRVRAMPRRDGNCTVWNGVVIDVTDVHRQAEALHEAKDAAEADLRAKEGFLAMM 396

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHEIRTP+  I+G  E+++N    P               SG+ +  I++D+LD ++IE+
Sbjct: 397 SHEIRTPMNGILGLVELLRNTALTPA----QHRMLTLAHESGHALAQILDDILDYARIEA 452

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNI 711
           G++ +   PV L E +    SL+   A +K + +R   + ++P  + AD   ++QI  N+
Sbjct: 453 GRLAIVPAPVDLRELLDSVSSLLLPQAQQKGLQLRVHVSADVPATVRADGIRMRQILFNL 512

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
           L NAI FT  G  + +  +  +++     ++L V+DTG+G+ + ++ +   PF Q   S 
Sbjct: 513 LGNAIKFTDRGS-VTLHASAETSDGETAALLLEVQDTGIGIASADMPRLFTPFMQGERSV 571

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             R  GTGLGL +++++     G   + S    GT   +  P
Sbjct: 572 TRRMGGTGLGLAISRSLAAMMGGSLVLTSEEGTGTTASLRVP 613



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 14/184 (7%), Positives = 52/184 (28%), Gaps = 5/184 (2%)

Query: 401 HTIQWNRENSLAMTFIPFE-KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459
             +        A+  +            +    +          + K+  E+    ++L 
Sbjct: 69  QVMTERGGMLRAVWPLLLPFMFASGVLAIGYLRMRRLITQRTKAEAKLGHELALRKALLA 128

Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF--LEQNTPSVMNHYLTEIL 517
              + +A  + +   +  N A    FG    D + +       L +     +     E +
Sbjct: 129 CLPEPVAAKDPDLRYIELNPAFEHFFGIAKADAMGRHALEVESLRERMTGDLLGLQDEAI 188

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAK 575
                +        ++ + + ++   +  + P            D+++  + + +    +
Sbjct: 189 RTMEPRQARLQMRNASGQSRRVNFWALPFRNPDGMPGGIVTVHFDVTDIDESRERAQAFE 248

Query: 576 KIAE 579
           +  +
Sbjct: 249 RRLK 252



 Score = 54.6 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 25/251 (9%), Positives = 60/251 (23%), Gaps = 16/251 (6%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D      E++       G      +G    +V  +      + +G   +   T   +   
Sbjct: 138 DPDLRYIELNPAFEHFFGIAKADAMGRHALEVESLRERMTGDLLGLQDEAIRTMEPRQAR 197

Query: 150 WPIEG-TNLYVPIDLAALPIYSRNREFSG--FRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
             +   +     ++  ALP  + +    G     F +  ++      +A  +RL      
Sbjct: 198 LQMRNASGQSRRVNFWALPFRNPDGMPGGIVTVHFDVTDIDESRERAQAFERRLKDVVDS 257

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHL------RMKNKVSSLTEYYAHKDDVLKTEKYP 260
           L          +      +                +    ++ ++  A         +  
Sbjct: 258 LPVTVFQSRLPQDASDRGWEVTYAAGDGVGRGIDTVAALGAAPSDSTAFCPQDRPRLRAA 317

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN-------SKESFEYLSHRNHPSLSA 313
           +L S  +  P   +            +     + +                HR   +L  
Sbjct: 318 ILESARTCQPLDVEGRLNRGPAPGWIRVRAMPRRDGNCTVWNGVVIDVTDVHRQAEALHE 377

Query: 314 YFDEGENLTPE 324
             D  E     
Sbjct: 378 AKDAAEADLRA 388


>gi|15903149|ref|NP_358699.1| sensory box sensor histidine kinase [Streptococcus pneumoniae R6]
 gi|116515922|ref|YP_816555.1| sensory box sensor histidine kinase [Streptococcus pneumoniae D39]
 gi|148985121|ref|ZP_01818360.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           SP3-BS71]
 gi|148989248|ref|ZP_01820628.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           SP6-BS73]
 gi|148998656|ref|ZP_01826095.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           SP11-BS70]
 gi|149007116|ref|ZP_01830785.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           SP18-BS74]
 gi|149012277|ref|ZP_01833346.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           SP19-BS75]
 gi|149019218|ref|ZP_01834580.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           SP23-BS72]
 gi|168484878|ref|ZP_02709823.1| sensor protein YycG [Streptococcus pneumoniae CDC1873-00]
 gi|168486548|ref|ZP_02711056.1| sensor protein YycG [Streptococcus pneumoniae CDC1087-00]
 gi|168491147|ref|ZP_02715290.1| sensor protein YycG [Streptococcus pneumoniae CDC0288-04]
 gi|168493148|ref|ZP_02717291.1| sensor protein YycG [Streptococcus pneumoniae CDC3059-06]
 gi|168577195|ref|ZP_02723004.1| sensor protein YycG [Streptococcus pneumoniae MLV-016]
 gi|169833288|ref|YP_001694657.1| sensor protein YycG [Streptococcus pneumoniae Hungary19A-6]
 gi|182684046|ref|YP_001835793.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           CGSP14]
 gi|221231921|ref|YP_002511073.1| sensor histidine kinase [Streptococcus pneumoniae ATCC 700669]
 gi|225854692|ref|YP_002736204.1| sensor protein YycG [Streptococcus pneumoniae JJA]
 gi|225856893|ref|YP_002738404.1| sensor protein YycG [Streptococcus pneumoniae P1031]
 gi|225859007|ref|YP_002740517.1| sensor protein YycG [Streptococcus pneumoniae 70585]
 gi|225860940|ref|YP_002742449.1| sensor protein YycG [Streptococcus pneumoniae Taiwan19F-14]
 gi|237649928|ref|ZP_04524180.1| sensor protein YycG [Streptococcus pneumoniae CCRI 1974]
 gi|237822523|ref|ZP_04598368.1| sensor protein YycG [Streptococcus pneumoniae CCRI 1974M2]
 gi|298230883|ref|ZP_06964564.1| sensor protein YycG [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298254364|ref|ZP_06977950.1| sensor protein YycG [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|298502778|ref|YP_003724718.1| sensor histidine kinase [Streptococcus pneumoniae TCH8431/19A]
 gi|307067875|ref|YP_003876841.1| signal transduction histidine kinase [Streptococcus pneumoniae
           AP200]
 gi|307127186|ref|YP_003879217.1| sensor protein YycG [Streptococcus pneumoniae 670-6B]
 gi|15458731|gb|AAK99909.1| Histidine kinase [Streptococcus pneumoniae R6]
 gi|116076498|gb|ABJ54218.1| sensory box sensor histidine kinase [Streptococcus pneumoniae D39]
 gi|147755493|gb|EDK62541.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           SP11-BS70]
 gi|147761420|gb|EDK68386.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           SP18-BS74]
 gi|147763603|gb|EDK70538.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           SP19-BS75]
 gi|147922566|gb|EDK73684.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           SP3-BS71]
 gi|147925226|gb|EDK76305.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           SP6-BS73]
 gi|147931088|gb|EDK82067.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           SP23-BS72]
 gi|168995790|gb|ACA36402.1| sensor protein YycG [Streptococcus pneumoniae Hungary19A-6]
 gi|172041979|gb|EDT50025.1| sensor protein YycG [Streptococcus pneumoniae CDC1873-00]
 gi|182629380|gb|ACB90328.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           CGSP14]
 gi|183570459|gb|EDT90987.1| sensor protein YycG [Streptococcus pneumoniae CDC1087-00]
 gi|183574369|gb|EDT94897.1| sensor protein YycG [Streptococcus pneumoniae CDC0288-04]
 gi|183576651|gb|EDT97179.1| sensor protein YycG [Streptococcus pneumoniae CDC3059-06]
 gi|183577215|gb|EDT97743.1| sensor protein YycG [Streptococcus pneumoniae MLV-016]
 gi|220674381|emb|CAR68931.1| sensor histidine kinase [Streptococcus pneumoniae ATCC 700669]
 gi|225721122|gb|ACO16976.1| sensor protein YycG [Streptococcus pneumoniae 70585]
 gi|225723105|gb|ACO18958.1| sensor protein YycG [Streptococcus pneumoniae JJA]
 gi|225725453|gb|ACO21305.1| sensor protein YycG [Streptococcus pneumoniae P1031]
 gi|225728161|gb|ACO24012.1| sensor protein YycG [Streptococcus pneumoniae Taiwan19F-14]
 gi|298238373|gb|ADI69504.1| sensor histidine kinase [Streptococcus pneumoniae TCH8431/19A]
 gi|301794309|emb|CBW36734.1| sensor histidine kinase [Streptococcus pneumoniae INV104]
 gi|301800147|emb|CBW32752.1| sensor histidine kinase [Streptococcus pneumoniae OXC141]
 gi|301801918|emb|CBW34642.1| sensor histidine kinase [Streptococcus pneumoniae INV200]
 gi|306409412|gb|ADM84839.1| Signal transduction histidine kinase [Streptococcus pneumoniae
           AP200]
 gi|306484248|gb|ADM91117.1| sensor protein YycG [Streptococcus pneumoniae 670-6B]
 gi|327389462|gb|EGE87807.1| sensory box protein [Streptococcus pneumoniae GA04375]
 gi|332074836|gb|EGI85308.1| sensory box protein [Streptococcus pneumoniae GA41301]
 gi|332201689|gb|EGJ15759.1| sensory box protein [Streptococcus pneumoniae GA47368]
          Length = 449

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 87/376 (23%), Positives = 166/376 (44%), Gaps = 33/376 (8%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           R+ +  +E E  +L SIL   +DG+   NR G I+  N    K  G   ED+L +     
Sbjct: 83  RLTQENLEQESKRLNSILFYMTDGVLATNRRGQIIMINDTAKKQLGLVKEDVLNRSILEL 142

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SL 556
           L+      +   +         Q+ E +        + L+LR+    +   S +      
Sbjct: 143 LKIEENYELRDLI--------TQSPELLLDSQDINGEYLNLRVRFALIRRESGFISGLVA 194

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            +HD +E ++E+ +                 F++ VSHE+RTPLT++  + E +      
Sbjct: 195 VLHDTTEQEKEERERRL--------------FVSNVSHELRTPLTSVKSYLEALDEGALC 240

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV- 675
               P   ++        N ++ +V DLL +S+I++   +L  E ++    ++  ++   
Sbjct: 241 ETVAP---DFIKVSLDETNRMMRMVTDLLHLSRIDNATSHLDVELINFTAFITFILNRFD 297

Query: 676 --QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
             +    EK+  +   +  N   +  D   + Q+  NIL+NAI ++P GG+I +    T 
Sbjct: 298 KMKGQEKEKKYELVRDYPINSIWMEIDTDKMTQVVDNILNNAIKYSPDGGKITVRMKTTE 357

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
           ++ + L + D G+G+   +L +    F ++  ++     GTGLGL +AK ++  + G  +
Sbjct: 358 DQMI-LSISDHGLGIPKQDLPRIFDRFYRVDRARSRAQGGTGLGLSIAKEIIKQHKGFIW 416

Query: 794 IFSTPAKGTLIEIIFP 809
             S   KG+   I+ P
Sbjct: 417 AKSEYGKGSTFTIVLP 432


>gi|225568759|ref|ZP_03777784.1| hypothetical protein CLOHYLEM_04838 [Clostridium hylemonae DSM
           15053]
 gi|225162258|gb|EEG74877.1| hypothetical protein CLOHYLEM_04838 [Clostridium hylemonae DSM
           15053]
          Length = 1113

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 127/775 (16%), Positives = 243/775 (31%), Gaps = 85/775 (10%)

Query: 95  LKEISEELPKTIGNYAFKMI----GMRLCDVSDILHIDPNNHIGDLLKRQN-TWYGKTTL 149
              +S E     G    + +    G  + +V             +  K     +  K  +
Sbjct: 199 FAFVSREAAALFGYTVEEFMEATGGSAVGNVYPPDLPKALADCAEAFKDGGLVYSTKYRV 258

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD-------- 201
              +G+     +  +       +  +     +  +  +  D         L         
Sbjct: 259 RCKDGSLK--WVIDSGKKARDADGNWMVNSLYLDITRSEEDAQRLREQTGLLTSIYETVP 316

Query: 202 ---KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
               +F    +      S+ +   +I          R  +    +      +D  +  + 
Sbjct: 317 CGIIRFVRHRDNSFSLISLNRAVIEIMGYADMETGCR--DWHDGVMGAVLKEDRKVLYDI 374

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQ----YFGTLQNNSKESFEYLSHRNHPSLSAY 314
           Y +L         +     ++ +             T   +       +       L   
Sbjct: 375 YSMLQDVGDRRDCEYRVRRMDGSIRWMDGTSMIVGVTPDGDDILQRTVVDATERKILQQR 434

Query: 315 FDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGG--LSTLLDA 372
            D    +    ++      F Y           F+          I          LL  
Sbjct: 435 LDREHEMYRVAMEVSSAVMFEYLMDE-----DRFISYEPRTGQGVIRNEIRDYSKELLKH 489

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
             +  ++    +     +        R  T        +           +        G
Sbjct: 490 EIVHPDDVATVIDN-ICNGRSEVFEVRCSTPGGRPGEFVWHRVNS-RLMTEEGRPDRVVG 547

Query: 433 IEPEDVDTRINKRKMEIEVMQLC---SILEATSD---GIAIINREGIILST--------- 477
                      K K+     +L    S L+A +D    I  ++ +               
Sbjct: 548 ALNNI---HKMKSKLSESSERLRMNQSALQAINDVYVSIFYVDLQKDSYYAVRLPEAGRG 604

Query: 478 NRAV------SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
           N          +L+GY ++D++        +      +   L +         LE     
Sbjct: 605 NTMARTGCYSEELYGYILQDVVDADRGKVADICERDSILRELAQRNGH-----LEVEFRN 659

Query: 532 STKEEKLLSLRIIIKKLPFSSCYSLTM--HDISEWKQEKNKLSHAKKIA----------- 578
            T     + + + +      S  +      +IS  KQ   +    +K A           
Sbjct: 660 RTSS-YWIRMEVHLTAAGGGSGKTAIFAFRNISAEKQRDLEYYEEEKKAKCALEEAYASV 718

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
            + +  KSDFL+R+SH+IRTP+ AI+G +E+    R       R  +  + ID SG  +L
Sbjct: 719 NRANQAKSDFLSRMSHDIRTPMNAIMGMAEIA---RNSTGDEKRIADCLSKIDLSGRHLL 775

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR-TSFANNIPRI 697
            ++N++LD+SKIESG M+L  + + LD  + E   +V+    +K      T        +
Sbjct: 776 GLINEVLDMSKIESGNMSLSEDVIVLDSFLREVSEIVRPDVEQKSQHYTVTRKEGKHSAV 835

Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-----VILRVRDTGVGMTNYE 752
             D   +KQI +N+LSNA+ +T  GG I +S     + E         V D G+GM+   
Sbjct: 836 YGDTVRLKQILINLLSNAVKYTQEGGHISVSLEEKLSGERGVGCFEFVVEDDGIGMSKEF 895

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           ++K   PF +  +S+  + +GTGLG+ +   +V    G   + S   +GT   + 
Sbjct: 896 IDKLFLPFERAEDSRVSQIQGTGLGMAITLNLVQMMNGTIQVDSRLDEGTKFTVT 950



 Score = 43.5 bits (101), Expect = 0.15,   Method: Composition-based stats.
 Identities = 21/143 (14%), Positives = 45/143 (31%), Gaps = 14/143 (9%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGI--ILSTNRAVSKLFGYPVEDIL----RKPF 497
           + +++    QL  I+ + + G+ I N +        +R  + LFGY VE+ +        
Sbjct: 167 EEEVKQRNRQLEVIMSSIAGGLKISNDDDTYSFAFVSREAAALFGYTVEEFMEATGGSAV 226

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT 557
                 + P  +           L            K+  L  +    KK   +    + 
Sbjct: 227 GNVYPPDLPKALADCAEAFKDGGL--VYSTKYRVRCKDGSLKWVIDSGKKARDADGNWMV 284

Query: 558 ---MHDISEWKQEKNKLSHAKKI 577
                DI+   + +      ++ 
Sbjct: 285 NSLYLDIT---RSEEDAQRLREQ 304


>gi|302342987|ref|YP_003807516.1| multi-sensor signal transduction histidine kinase [Desulfarculus
           baarsii DSM 2075]
 gi|301639600|gb|ADK84922.1| multi-sensor signal transduction histidine kinase [Desulfarculus
           baarsii DSM 2075]
          Length = 610

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 101/643 (15%), Positives = 196/643 (30%), Gaps = 67/643 (10%)

Query: 181 FGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV 240
           + I ++  +     A+     +       +       +      F         + +   
Sbjct: 24  WAIANLIALGRATDAILSENYRSILAAENMIDALERQDSGVLLTFLGDDGEGIAQYRENE 83

Query: 241 SS-LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
           +  L      KD+V    +  L+ S E+         +        +          +  
Sbjct: 84  AVFLEWLARAKDNVTVRGEADLVRSIEADYGAYRKLFSAPGGPRGAEAAARPGVRYQQAI 143

Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDD 359
               +      +         +   +V    +                 +  T   +   
Sbjct: 144 HPIFAKVRQACIDLRNLNERTMYAASVRAGDVA-------------RRAIWSTALVAALA 190

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
           +  A   S LL    +     +       S                             +
Sbjct: 191 LTAALAFSLLLSERLVRPLRRVTEASRKISSGDYG-----------------------VQ 227

Query: 420 KANQFPENMPQNGIEPEDVDTRINK------RKMEIEVMQLCSILEATSDGIAIINREGI 473
              +  + +     E   +  R+         ++  E  +  +I+ +  DG+ + +    
Sbjct: 228 VPVEAGDELGNLAGEFNQMARRLASYHEMNIEQIIAEKNKSEAIISSIEDGLVVFDTNLR 287

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
           + S N A   L   P+           L       +     E          E+  +   
Sbjct: 288 VASINPAARALLEMPLGQGSAPSCADILPDERLCQIIRAAVE-NGARPALPDERRVIAIR 346

Query: 534 KEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
           K E        +  +           L + D++  K+ +                KS+F+
Sbjct: 347 KGETTKECLFSVTAIRGGDRRLSGVVLLLRDVTRLKEVE--------------RLKSEFV 392

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
              SHE+RTPLT+ +G S  +  +        R  E           +  +V+DLLD+SK
Sbjct: 393 MAASHELRTPLTS-LGMSVGLLLEHAVAGLAERDRELLQAAHEEIQRMKALVDDLLDLSK 451

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709
           IE+G++ L FE VS+      A ++ +       + +        P + AD   +  +  
Sbjct: 452 IEAGRIELEFESVSVATLFDHAKAVFKNQLEMNGVSLTAELDAAAPPVRADANKITWVLT 511

Query: 710 NILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
           N++SNA+ +   GG I ++ +        L VRD G G+      K  + F Q+      
Sbjct: 512 NLISNALRYVGKGGHIALAASVI-GPCAHLSVRDDGPGIPPEFQSKIFQKFVQVQG---R 567

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
              GTGLGL + K +V A+ G  ++ S P +G+      PL  
Sbjct: 568 EAGGTGLGLAICKEIVRAHGGAIWVESAPGQGSKFIFTLPLAR 610


>gi|224502418|ref|ZP_03670725.1| hypothetical protein LmonFR_07844 [Listeria monocytogenes FSL
           R2-561]
          Length = 610

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 81/398 (20%), Positives = 168/398 (42%), Gaps = 29/398 (7%)

Query: 424 FPENMPQNGIEPEDVDTRINKRKM--EIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
             + + +       +  R+ + +   E E  +L S+L   +DG+   +R G ++  N   
Sbjct: 236 GVDEIGELADSFNTLTKRVQEAQAMTEGERRKLSSVLAYMTDGVIATDRRGKVILINTPA 295

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT-EILSLDLRQTLEKITLGSTKEEKLLS 540
            K+     E    +     L+          +  +      R TL+K  +          
Sbjct: 296 EKMLRVKHESANGRSIIDVLDIGDTYQFEDLMEVDGSLTMDRSTLDKPYVLRAN------ 349

Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
             +I ++  F++     +HDI++ ++   +              + DF++ VSHE+RTPL
Sbjct: 350 FSVIQRETGFNNGVIAVLHDITDQEKVDQE--------------RRDFVSNVSHELRTPL 395

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
           T++  + E + +  +          +          ++ +VNDLL +S+++ G+  L   
Sbjct: 396 TSMHSYLEALSDGAW--EDKEIAPRFLEVTQNETERMIRLVNDLLKLSRMDGGREQLEKS 453

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720
            V+  +  +  I   +    ++ I+ +         I  D   V Q+  NI+SNA  ++P
Sbjct: 454 FVNFTDFFNHIIDRFE-MMKKETIMFKRHIPREPVIIEIDEDKVMQVLDNIISNANKYSP 512

Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
            GG+I        + E+ + + D G+G+ + +L      F ++  ++     GTGLGL +
Sbjct: 513 DGGRISFYLKKFED-EIEVSIADEGLGVPDEDLANVFDRFFRVDKARSREMGGTGLGLAI 571

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
           A+ +++A+ G+ +      KGT+I+   P   +  P D
Sbjct: 572 AREVIEAHGGRIWAERNKNKGTIIKFTLP--YSDLPED 607


>gi|254512446|ref|ZP_05124513.1| sensor histidine kinase/response regulator [Rhodobacteraceae
           bacterium KLH11]
 gi|221536157|gb|EEE39145.1| sensor histidine kinase/response regulator [Rhodobacteraceae
           bacterium KLH11]
          Length = 748

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 103/461 (22%), Positives = 191/461 (41%), Gaps = 24/461 (5%)

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
            +  L++  A +      ++R      A L           A+         Q      +
Sbjct: 10  PSMSLAEKLAQERRARLAAERLLHLKQAELSAANRKLGR-HAIALTRQIDETQAEVATVR 68

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490
           +  E    D  +   K+E+   +L   ++   DG A  +    ++  N A   +F    E
Sbjct: 69  DENEKVKSDLTMAHAKIEVAERRLWHSIQTIPDGFAFFDGNNTLIGANAAYLSVFDGLEE 128

Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI-------TLGSTKEEKLLSLRI 543
                 +   LE  T   +     +     L + L++         +      + + L  
Sbjct: 129 VAPGITYPRLLEILTCEGIVDIGADRTEDWLARMLDRWAQPHPEPMVIQLWNGQYIRL-- 186

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
            I +            +I+   + + +L+ A++ AE  +  KS FLA +SHEIRTP+  I
Sbjct: 187 -IDQRGHGGDVLSLALNITATVRHEAELNAARERAEAANRAKSAFLANMSHEIRTPMNGI 245

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +G +E++         N     Y + I  SG  +L I+ND+LD SKIE+ K+ LH E   
Sbjct: 246 VGMTELLTETPL----NEEQRLYISTIRNSGEALLVIINDVLDYSKIEADKLTLHPEQFD 301

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSG 722
           L+  + E   L+Q    +K + +   +   +P + + D   ++QI  N++ NA+ FT  G
Sbjct: 302 LERCILEVAMLLQPSVRDKGLTLLVDYDLFLPTLFVGDPGRIRQILTNLVGNAVKFTAQG 361

Query: 723 GQIIISTTHTSNE-----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
             +++  T   +      ++ + + DTG+G+   ++      F QI ++Q  + EGTGLG
Sbjct: 362 -HVLVRVTGVPDASAQSCDIHVAIEDTGIGIEADKIAHIFGEFNQIEDAQNRQFEGTGLG 420

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTL--IEIIFPLYDTSHP 816
           L + K ++    G  ++ S   +G+     I  P  +   P
Sbjct: 421 LAITKRLITMMGGTVWVESDVGRGSCFGFRISLPTAEGPQP 461


>gi|75907786|ref|YP_322082.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
 gi|75701511|gb|ABA21187.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
          Length = 1550

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 107/757 (14%), Positives = 244/757 (32%), Gaps = 69/757 (9%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKRQNTWYG-- 145
            +D+ G +   ++      G    ++ G    ++      ++ +          +   G  
Sbjct: 416  LDSQGRIVRFNQACEVITGYSFDEVRGRHFWNLFLLPEDVESSKASFAKFPTDSRVSGIQ 475

Query: 146  KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI-VHVNRVDNDPRALGKRLDKKF 204
            ++  + +        I  +   + +         G GI +   +  +    +   + +  
Sbjct: 476  ESENYWVTKDGSRRLIAWSRTILQNHEGSVEYIIGTGIDITERKRADKHLTIQYAITRVL 535

Query: 205  SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
            +    I +    + +   +            M N+  +   ++   D      +     S
Sbjct: 536  AESTTITEATPQILQAICETLKWDVCEIW--MVNQQGNFLSFFDLWDQTSLEMQEFKTQS 593

Query: 265  EESSLPE---QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
            +  +             +                  +    +  R          +    
Sbjct: 594  QPITFASGIGLPGQIWASGQPIWLTDIADDASFLRNQLAAQVGLRGAFGFPIRSGQKILG 653

Query: 322  TPETVDKCP---IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
                         P       ++      F  + + ++ ++++     S L         
Sbjct: 654  VITCFSHQVQPHDPDLAKIMDSIGEQVGQF--IHRKQAEEELQRQNLRSQLFTEI----- 706

Query: 379  NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
                 + + +S +        +  +Q   +    + +      +                
Sbjct: 707  ----TLKIRQSLQIEEILQITVKEVQKILQTDRVLIYQLLPDGSGSLIIEAVVAGWAAIK 762

Query: 439  DTRINKRKMEIEVM--------QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490
               I    ++ E          +L  +     + IA ++    +    ++  +L     +
Sbjct: 763  GQNITDFYLQTEYQQQYCLQQYRLRHL-----EAIANLD----LAEIQQSHLELL---RK 810

Query: 491  DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
              ++    + +           + +  +     + E   L    +               
Sbjct: 811  FGVKANLVIPILVKDELCGLLIVHQCANSRQWTSFETHLLRQIAD--------------Q 856

Query: 551  SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
                      +    +++ +L  A+  AE  S  KS FLA +SHEIRTP+ A++G + ++
Sbjct: 857  VGIAVAQAQLLEVETRQRQELEVARSQAELASHAKSAFLANMSHEIRTPMNAVLGMTGLM 916

Query: 611  KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
                   L N    ++   I  SG+ +L ++N++LD+SK+E+G+M L     +L   V E
Sbjct: 917  LET----LLNQEQRDFMETIRISGDALLTLINEILDLSKLEAGEMALENLNFNLSTCVEE 972

Query: 671  AISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQI-IIS 728
             + L+   A+ K + I      ++P ++  D   ++QI +N++ NAI FT  G  +  + 
Sbjct: 973  VLDLLAPQAHSKGLEIAALIYRHVPIQLQGDASRLRQILMNLIGNAIKFTSFGEVVMRVE 1032

Query: 729  TTHTSNEE--VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
                +     +   V D+G+G+T  +  K   PF Q+  S   +  GTGLGL + K +V 
Sbjct: 1033 LRSETPTTAIIHFAVTDSGLGITLEDQHKLFTPFTQVDASTTRKYGGTGLGLAICKQLVT 1092

Query: 787  ANMGKFYIFSTPAKGTLIEIIFPLYDTSHP----HDC 819
               G+  + S   KG+      P      P     DC
Sbjct: 1093 LMGGEIGVESQLGKGSKFWFEIPFAKQLQPVSFVEDC 1129



 Score = 81.6 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/199 (13%), Positives = 65/199 (32%), Gaps = 7/199 (3%)

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
           + VM        +    +L  ++ + +  + +  I           +       E +  +
Sbjct: 331 RKVMREMETEEKVRLQQQLQAVKASGQKVIVILAIAIVSGLIILAVVYYLIYC-EVIARQ 389

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
             +  +  E   + ++L+  S  + +++ +G I+  N+A   + GY  +++  + F    
Sbjct: 390 SMENILNEERNFISAVLDTVSALVIVLDSQGRIVRFNQACEVITGYSFDEVRGRHFWNLF 449

Query: 502 --EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YS 555
              ++  S    +        +    E      TK+     +      L           
Sbjct: 450 LLPEDVESSKASFAKFPTDSRVSGIQESENYWVTKDGSRRLIAWSRTILQNHEGSVEYII 509

Query: 556 LTMHDISEWKQEKNKLSHA 574
            T  DI+E K+    L+  
Sbjct: 510 GTGIDITERKRADKHLTIQ 528



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/192 (12%), Positives = 55/192 (28%), Gaps = 24/192 (12%)

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGG 365
              S+    +E  N     +D       V    G +   N +  ++T Y   +       
Sbjct: 387 ARQSMENILNEERNFISAVLDTVSALVIVLDSQGRIVRFNQACEVITGYSFDEV--RGRH 444

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
              L   P+  +++           R      +  + +  +      + +      N   
Sbjct: 445 FWNLFLLPEDVESSKASFAKFPTDSRVSGIQESENYWVTKDGSR-RLIAWSRTILQNHEG 503

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIE------VMQLCSILEATSDG--------------I 465
                 G   +  + +   + + I+      + +  +I EAT                 I
Sbjct: 504 SVEYIIGTGIDITERKRADKHLTIQYAITRVLAESTTITEATPQILQAICETLKWDVCEI 563

Query: 466 AIINREGIILST 477
            ++N++G  LS 
Sbjct: 564 WMVNQQGNFLSF 575


>gi|332528042|ref|ZP_08404075.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax benzoatilyticus
           JA2]
 gi|332112615|gb|EGJ12408.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax benzoatilyticus
           JA2]
          Length = 521

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 98/521 (18%), Positives = 190/521 (36%), Gaps = 17/521 (3%)

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKS 356
            S E  +    P      D    L    +       + +             L +  Y+ 
Sbjct: 7   PSPEQAAPTPPPEPGDDGDARHALFHAALAGTGTFVWGWDLDTDRLSDVEEGLAMLGYRP 66

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
            D          L+    L    A     L  +           + I+        +   
Sbjct: 67  GDIGPTQADWDRLIHPDDL---AANHEAYLRHARGEVDVYE-HCYRIRDAAGRWRWVRER 122

Query: 417 -PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII--NREGI 473
               + +         G + +  + R      +  +  L  I       +  I  + E  
Sbjct: 123 GRIVERSADGRPRRMLGTQTDITELRELADTAQQALEGLARIARHVPGTLVQIHADPERR 182

Query: 474 IL--STNRAVSKLFGYPVEDIL--RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
           I     +     LFG    ++    +     +E      +   +            E   
Sbjct: 183 ITFPYASERCRALFGIEPAELARDGRALLDCVEPEDRGPLRAAIRASARTLEPWRAEFRV 242

Query: 530 LGSTKEEKLLSLRIIIKKLPFSS-CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
                + + +       +    S  +   + D +E ++ +     A   A      K++F
Sbjct: 243 R-RAGQLRWVRGEATPSRQADGSTVWHGYLEDATERRELEQARQDAAVAAAAN-RAKTEF 300

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
           L+R+SHE+RTPL A++GF++++++    P    +       I  +G  +L ++ DLLD++
Sbjct: 301 LSRMSHELRTPLNAVLGFAQLLESDPVEPPSESQQRR-IKLIREAGEHLLQMIGDLLDLT 359

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIA 708
           +IESG + L    V L     EA+++V   A   ++ +  + +    R+ AD   ++Q+ 
Sbjct: 360 RIESGGIELRLAAVPLRPLAEEALAMVAGSAERAQVTLALADSAPGARVRADGTRLRQVL 419

Query: 709 LNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
           LN+L+NAI +  +GG++ +           L V DTG+G+   E E+  +PF +    + 
Sbjct: 420 LNLLTNAIKYNRAGGRVELEIAAPQGRWQPLAVHDTGIGIARDERERLFEPFYRGRAVRG 479

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
              EGTG+GL L + +V    G+  + S P +G+   +  P
Sbjct: 480 RV-EGTGIGLALTQDLVVLMGGRIEVDSEPGRGSSFTVTLP 519



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 34/433 (7%), Positives = 94/433 (21%), Gaps = 37/433 (8%)

Query: 47  DSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAH-GYLKEISEELPKT 105
                S             +  D+ +      +  T  F W  D     L ++ E L   
Sbjct: 3   TQPPPSPEQAAPTPPPEPGDDGDARHALFHAALAGTGTFVWGWDLDTDRLSDVEEGLA-M 61

Query: 106 IGNYAFKM--IGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDL 163
           +G     +         +     +  N+       R      +      +    +  +  
Sbjct: 62  LGYRPGDIGPTQADWDRLIHPDDLAANHEAYLRHARGEVDVYEHCYRIRDAAGRWRWVRE 121

Query: 164 AALPI-YSRNREFSGFRGFGIVHVNRV-DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEK 221
               +  S +      R  G                + L+        +      +  + 
Sbjct: 122 RGRIVERSADGRPR--RMLGTQTDITELRELADTAQQALEGLARIARHVPGTLVQIHADP 179

Query: 222 YDIFSQQSPPPHLRMKNKVSSLTEYYAHKD-------DVLKTEKYPLLTSEESSLPEQED 274
               +        R    +         +        +     +  +  S  +  P + +
Sbjct: 180 ERRITFPYASERCRALFGIEPAELARDGRALLDCVEPEDRGPLRAAIRASARTLEPWRAE 239

Query: 275 FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF 334
           F      Q    +   T    +  S  +  +    +     ++                 
Sbjct: 240 FRVRRAGQLRWVRGEATPSRQADGSTVWHGYLEDATERRELEQARQDAAVAAAA------ 293

Query: 335 VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM---LYRSDR 391
                    A   FL    ++    +    G + LL++  +   +  +      +  +  
Sbjct: 294 -------NRAKTEFLSRMSHELRTPLNAVLGFAQLLESDPVEPPSESQQRRIKLIREAGE 346

Query: 392 TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK------R 445
             +     L  +       + +            E +       E     +         
Sbjct: 347 HLLQMIGDLLDLTRIESGGIELRLAAVPLRPLAEEALAMVAGSAERAQVTLALADSAPGA 406

Query: 446 KMEIEVMQLCSIL 458
           ++  +  +L  +L
Sbjct: 407 RVRADGTRLRQVL 419


>gi|182412287|ref|YP_001817353.1| PAS/PAC sensor hybrid histidine kinase [Opitutus terrae PB90-1]
 gi|177839501|gb|ACB73753.1| PAS/PAC sensor hybrid histidine kinase [Opitutus terrae PB90-1]
          Length = 642

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 92/503 (18%), Positives = 164/503 (32%), Gaps = 51/503 (10%)

Query: 332 PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR 391
            +     G L  AN SF               G    L+      D+ A           
Sbjct: 31  AYCRDLKGRLIAANLSFARKFGRP------QTGLAGLLMAEFIHPDDLAAFNATFVELAE 84

Query: 392 TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV 451
               A +    I        +         +     +   G+  +    R+     E + 
Sbjct: 85  PPYRAVSESRWITPQGVRWFSWEKTSI--RDASGAIVAVRGVGRDITRQRMA----EEQF 138

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE-QNTPSVMN 510
            +L   +E +   I I + +G     N   +++ G  +EDIL +   V  +         
Sbjct: 139 YRLSRAIEQSPVAIVITDLDGRAQYVNPKFTEVSGRTLEDILDRKIEVLRDGHPDEDSYR 198

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQ 566
            +   + +    +           +   +   + +  L   +           DI+  K 
Sbjct: 199 KFWDTVRAGGEWRG---ELATRRPDGTTVWESVKVSCLRNPTGEITNLLCMREDITSRKA 255

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
            + +L  A K+              ++H+    L  I G+SE       G        + 
Sbjct: 256 LEAELRQAHKM-----ESLGTLAGGIAHDFNNLLAIIHGYSEFCLQ---GAAEPAVMQKS 307

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
              I R+      +V  +L  S+    K  + + PV L++   + ++L+        I  
Sbjct: 308 LQEIHRAAQRASGLVKQILTFSR----KAEIRYAPVDLNQLARDLVALMSETFPR-TITF 362

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV--------- 737
               A  +P +LAD   V+QI LN+  NA    P GG I++ST      E+         
Sbjct: 363 TLDLAEKLPPLLADQTQVQQIVLNLCVNARDAMPDGGSIVVSTAIRLGAELQSRHYSAEP 422

Query: 738 -----ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
                 L + D+G GMT     +  +PF     S     +GTGLGL +   +  ++ G  
Sbjct: 423 VRRYACLSIADSGSGMTPEVCSRIFEPFFTTKQSN----QGTGLGLAVVYGIATSHNGFI 478

Query: 793 YIFSTPAKGTLIEIIFPLYDTSH 815
            + ST   G+   +  PL   + 
Sbjct: 479 DVESTVGIGSTFRVYLPLASDTA 501



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/340 (9%), Positives = 81/340 (23%), Gaps = 26/340 (7%)

Query: 209 EIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
           E     +     K  + +                   L   + H DD+       +  +E
Sbjct: 25  ENSADPAYCRDLKGRLIAANLSFARKFGRPQTGLAGLLMAEFIHPDDLAAFNATFVELAE 84

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
                  E                 ++++ S             +     +E        
Sbjct: 85  PPYRAVSESRWITPQGVRWFSWEKTSIRDASGAIVAVRGVGRDITRQRMAEEQFYRLSRA 144

Query: 326 VDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
           +++ P+   +    G   Y NP F  ++     D ++    +          D ++ +  
Sbjct: 145 IEQSPVAIVITDLDGRAQYVNPKFTEVSGRTLEDILDRKIEV----LRDGHPDEDSYRKF 200

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
                              +     ++  +       N   E      +  +    +  +
Sbjct: 201 WDTVRAGGEWRGEL---ATRRPDGTTVWESVKVSCLRNPTGEITNLLCMREDITSRKALE 257

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            ++  +  ++ S L   + GIA           N  ++ + GY    +         E  
Sbjct: 258 AELR-QAHKMES-LGTLAGGIA--------HDFNNLLAIIHGYSEFCLQG-----AAEPA 302

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
                   +            + +T     E +   + + 
Sbjct: 303 VMQKSLQEIHRAAQRASGLVKQILTFSRKAEIRYAPVDLN 342



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/111 (11%), Positives = 36/111 (32%), Gaps = 5/111 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD-ILHIDPNNHIGDLLKRQNTWYGKT 147
            D  G  + ++ +  +  G     ++  ++  + D     D      D ++    W G+ 
Sbjct: 155 TDLDGRAQYVNPKFTEVSGRTLEDILDRKIEVLRDGHPDEDSYRKFWDTVRAGGEWRGEL 214

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
                +GT ++  + ++ L   +   E +      +           A  +
Sbjct: 215 ATRRPDGTTVWESVKVSCL--RNPTGEITNL--LCMREDITSRKALEAELR 261



 Score = 58.1 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 37/391 (9%), Positives = 82/391 (20%), Gaps = 35/391 (8%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D  G L   +    +  G     + G+ + +      +   N     L          + 
Sbjct: 35  DLKGRLIAANLSFARKFGRPQTGLAGLLMAEFIHPDDLAAFNATFVELAEPPYRAVSESR 94

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
           W                 I   +      RG G                RL +       
Sbjct: 95  WIT--PQGVRWFSWEKTSIRDASGAIVAVRGVG--RDITRQRMAEEQFYRLSRAIEQSP- 149

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA---HKDDVLKTEKYPLLTSEE 266
                 +    +    + +      R    +           H D+    + +  + +  
Sbjct: 150 -VAIVITDLDGRAQYVNPKFTEVSGRTLEDILDRKIEVLRDGHPDEDSYRKFWDTVRAGG 208

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
               E       +     +      L+N + E    L  R   +     +       +  
Sbjct: 209 EWRGEL-ATRRPDGTTVWESVKVSCLRNPTGEITNLLCMREDITSRKALEAELRQAHKME 267

Query: 327 DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
               +       G     N    ++  Y              L  A + +        + 
Sbjct: 268 SLGTLA-----GGIAHDFNNLLAIIHGYSEF----------CLQGAAEPAVMQKSLQEIH 312

Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
             + R        L   +        +      +      +          +D       
Sbjct: 313 RAAQRASGLVKQILTFSRKAEIRYAPVDLNQLARDLVALMSETFPRTITFTLDLAEKLPP 372

Query: 447 MEIEVMQLCSIL--------EATSDG--IAI 467
           +  +  Q+  I+        +A  DG  I +
Sbjct: 373 LLADQTQVQQIVLNLCVNARDAMPDGGSIVV 403



 Score = 54.6 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/125 (12%), Positives = 43/125 (34%), Gaps = 3/125 (2%)

Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
           E ++D     + +G +++ N + ++ FG P   +       F+  +  +  N    E+  
Sbjct: 25  ENSADPAYCRDLKGRLIAANLSFARKFGRPQTGLAGLLMAEFIHPDDLAAFNATFVELAE 84

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL--TMHDISEWKQEKNKLSHAKK 576
              R   E   +      +  S      +    +  ++     DI+  +  + +     +
Sbjct: 85  PPYRAVSESRWITPQG-VRWFSWEKTSIRDASGAIVAVRGVGRDITRQRMAEEQFYRLSR 143

Query: 577 IAEKE 581
             E+ 
Sbjct: 144 AIEQS 148


>gi|16802334|ref|NP_463819.1| hypothetical protein lmo0288 [Listeria monocytogenes EGD-e]
 gi|47096377|ref|ZP_00233972.1| sensory box histidine kinase [Listeria monocytogenes str. 1/2a
           F6854]
 gi|224498863|ref|ZP_03667212.1| hypothetical protein LmonF1_03828 [Listeria monocytogenes Finland
           1988]
 gi|254828748|ref|ZP_05233435.1| sensory box histidine kinase [Listeria monocytogenes FSL N3-165]
 gi|254831884|ref|ZP_05236539.1| hypothetical protein Lmon1_11045 [Listeria monocytogenes 10403S]
 gi|254900523|ref|ZP_05260447.1| hypothetical protein LmonJ_11934 [Listeria monocytogenes J0161]
 gi|254913526|ref|ZP_05263538.1| sensory box histidine kinase [Listeria monocytogenes J2818]
 gi|254937893|ref|ZP_05269590.1| sensory box histidine kinase [Listeria monocytogenes F6900]
 gi|255026055|ref|ZP_05298041.1| hypothetical protein LmonocytFSL_06310 [Listeria monocytogenes FSL
           J2-003]
 gi|284800587|ref|YP_003412452.1| hypothetical protein LM5578_0334 [Listeria monocytogenes 08-5578]
 gi|284993773|ref|YP_003415541.1| hypothetical protein LM5923_0333 [Listeria monocytogenes 08-5923]
 gi|16409653|emb|CAD00815.1| lmo0288 [Listeria monocytogenes EGD-e]
 gi|47015251|gb|EAL06189.1| sensory box histidine kinase [Listeria monocytogenes str. 1/2a
           F6854]
 gi|258601155|gb|EEW14480.1| sensory box histidine kinase [Listeria monocytogenes FSL N3-165]
 gi|258610501|gb|EEW23109.1| sensory box histidine kinase [Listeria monocytogenes F6900]
 gi|284056149|gb|ADB67090.1| hypothetical protein LM5578_0334 [Listeria monocytogenes 08-5578]
 gi|284059240|gb|ADB70179.1| hypothetical protein LM5923_0333 [Listeria monocytogenes 08-5923]
 gi|293591536|gb|EFF99870.1| sensory box histidine kinase [Listeria monocytogenes J2818]
          Length = 610

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 81/398 (20%), Positives = 168/398 (42%), Gaps = 29/398 (7%)

Query: 424 FPENMPQNGIEPEDVDTRINKRKM--EIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
             + + +       +  R+ + +   E E  +L S+L   +DG+   +R G ++  N   
Sbjct: 236 GVDEIGELADSFNTLTKRVQEAQAMTEGERRKLSSVLAYMTDGVIATDRRGKVILINTPA 295

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT-EILSLDLRQTLEKITLGSTKEEKLLS 540
            K+     E    +     L+          +  +      R TL+K  +          
Sbjct: 296 EKMLRVKHESANGRSIIDVLDIGDTYQFEDLMEVDGSLTMDRSTLDKPYVLRAN------ 349

Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
             +I ++  F++     +HDI++ ++   +              + DF++ VSHE+RTPL
Sbjct: 350 FSVIQRETGFNNGVIAVLHDITDQEKVDQE--------------RRDFVSNVSHELRTPL 395

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
           T++  + E + +  +          +          ++ +VNDLL +S+++ G+  L   
Sbjct: 396 TSMHSYLEALSDGAW--EDKEIAPRFLEVTQNETERMIRLVNDLLKLSRMDGGREQLEKS 453

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720
            V+  +  +  I   +    ++ I+ +         I  D   V Q+  NI+SNA  ++P
Sbjct: 454 FVNFTDFFNHIIDRFE-MMKKETIMFKRHIPREPVIIEIDEDKVMQVLDNIISNANKYSP 512

Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
            GG+I        + E+ + + D G+G+ + +L      F ++  ++     GTGLGL +
Sbjct: 513 DGGRISFYLKKFED-EIEVSIADEGLGVPDEDLANVFDRFFRVDKARSREMGGTGLGLAI 571

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
           A+ +++A+ G+ +      KGT+I+   P   +  P D
Sbjct: 572 AREVIEAHGGRIWAERNKNKGTIIKFTLP--YSDLPED 607


>gi|298290314|ref|YP_003692253.1| integral membrane sensor signal transduction histidine kinase
           [Starkeya novella DSM 506]
 gi|296926825|gb|ADH87634.1| integral membrane sensor signal transduction histidine kinase
           [Starkeya novella DSM 506]
          Length = 839

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 123/659 (18%), Positives = 218/659 (33%), Gaps = 41/659 (6%)

Query: 171 RNREFSGFRGFGIVHVNR----VDNDPRALGKRLDKKFSHLH---EIKKGHSSVEKEKYD 223
            +    G      +              A  + LD + S L    +     + V+ E   
Sbjct: 193 ADGRPVGAAVVLRLRDITGVRLDQAQLEAAYRALDAESSALRTLLDALPAPAWVDGEDGR 252

Query: 224 IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY 283
           +    +   H       S          D     +     +  +SLP +     +     
Sbjct: 253 LRWSNAAYAHAVEARDASDAASRGLMLLDQQSRTQAEK--AHAASLPFKARLPVVVAGTR 310

Query: 284 TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLF 342
                               +      + A   +       T+D+      ++     L 
Sbjct: 311 RVLDVLEVPAGGGAAGIALDA-TEAEVVRAELAQVVGAHRRTLDQLATAVAIFGADQRLV 369

Query: 343 YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA---R 399
           + N ++  L              L       + +D   +  +   R              
Sbjct: 370 FHNAAYARLFD------------LDAAFLDDRPTDGAVLDRLRAARRLPEQADFRLWREE 417

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI-- 457
           LH      E       +P  +  +        G      D    +  +E     L  I  
Sbjct: 418 LHAAYRAIEPREHWWHLPGGRTLRVVTAPNPEGGITYLFDEVTERLALESRFNSLTRIQS 477

Query: 458 --LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
             L+A ++ +A+   +G +   N A  +L+      +   P    +      +       
Sbjct: 478 ETLDALAEAVAVFGSDGRLGLVNSAFRRLWQLDAAMLDAHPHIDAVAAACRPLTADAAVW 537

Query: 516 ILSLDLRQTLEK----ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571
                    +E            +  +L                +T+ D+++    +  L
Sbjct: 538 ARLTATVTGIEARMPTEFRMERNDRTILDGSTQPLP---DGATLVTLRDVTDSVNVERAL 594

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
                        KS F++ VS+E+R+PLT IIGF++++ +   GPL N +   Y N+I 
Sbjct: 595 VERNDALVAADHLKSTFVSHVSYELRSPLTTIIGFAQLLDDTGIGPL-NVKQRAYVNHIT 653

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
            S   +L I+ND+LD++ I++G M L    V +  A+  A   V+    E  I +     
Sbjct: 654 ESSAALLAIINDILDLATIDAGSMALELTEVDVRAAMDAAAEGVRDRLAEGGIRLSIELQ 713

Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751
           N      AD + V+QI  N+LSNA+ F P G  + +S     +  VI RVRD G G+   
Sbjct: 714 NAAGSFRADAKRVRQILYNLLSNAVGFAPEGSTVTLSAERREDG-VIFRVRDMGPGVPPE 772

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
              +A   F    ++   R  G GLGL + +++V  + G   +      GTL+  IFPL
Sbjct: 773 IGARAFDRFE--SHTAGSRHRGVGLGLSIVRSLVALHGGTVSLAPAQGGGTLVTCIFPL 829



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 41/400 (10%), Positives = 105/400 (26%), Gaps = 31/400 (7%)

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP-HLRMKNKVSSLTEYYAHKDDVLKTEKY 259
           + +   + E +      +          +P    +    ++ +   +             
Sbjct: 110 EARALLMAEPQIVVVWRDPAADPEIIGNTPAFTGVAAPARILAFGSWLTPASAREIEAAV 169

Query: 260 PLLTSEESSLPEQEDFHTIN-LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
             L    + L           +    +      +      +   L      +     D  
Sbjct: 170 DRLRGRGTPLAATLATQDGRFVEADGRPVGAAVVLRLRDITGVRLDQAQLEAAYRALDAE 229

Query: 319 ENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
            +     +D  P P +V    G L ++N ++    + +   D    G +  LLD    + 
Sbjct: 230 SSALRTLLDALPAPAWVDGEDGRLRWSNAAYAHAVEARDASDAASRGLM--LLDQQSRTQ 287

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
                   L           ARL          +           + P      GI  + 
Sbjct: 288 AEKAHAASL--------PFKARL--------PVVVAGTRRVLDVLEVPAGGGAAGIALDA 331

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
            +  + + ++   V      L+  +  +AI   +  ++  N A ++LF      +  +P 
Sbjct: 332 TEAEVVRAELAQVVGAHRRTLDQLATAVAIFGADQRLVFHNAAYARLFDLDAAFLDDRPT 391

Query: 498 TVFLEQNTPSVMN-------HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
              +     +              E L    R    +         + L +         
Sbjct: 392 DGAVLDRLRAARRLPEQADFRLWREELHAAYRAIEPREHWWHLPGGRTLRVVTAPNP--- 448

Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
               +    +++E    +++ +   +I  +     ++ +A
Sbjct: 449 EGGITYLFDEVTERLALESRFNSLTRIQSETLDALAEAVA 488


>gi|238785117|ref|ZP_04629112.1| Aerobic respiration control sensor protein arcB [Yersinia
           bercovieri ATCC 43970]
 gi|238714009|gb|EEQ06026.1| Aerobic respiration control sensor protein arcB [Yersinia
           bercovieri ATCC 43970]
          Length = 778

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 78/374 (20%), Positives = 161/374 (43%), Gaps = 16/374 (4%)

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
                + ++  +   L S L+A+ D +   N +      NRA+  L G   + ++     
Sbjct: 142 HREQAQVELGQQSALLRSFLDASPDLVYYRNEDNEFSGCNRAMELLTGKSEKQLVGLTPK 201

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII--KKLPFSSCYSL 556
                +    +     ++   ++  T E+  +     +    LR +    ++        
Sbjct: 202 DVYAPDIAEKVMETDEKVFRHNVSLTYEQWLVYPDGRKACFELRKVPFYDRVGKRHGLMG 261

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
              DI+E K+ ++ L +        S  K+ F++ +SHE+RTPL  I+G S ++ +    
Sbjct: 262 FGRDITERKRYQDALEN-------ASRDKTTFISTISHELRTPLNGIVGLSRILLDTEL- 313

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
              +   ++Y   I  S   + +I ND++++ K+E  K+ L  +P+     +++  +L  
Sbjct: 314 ---DSEQLKYLKTIHVSAITLGNIFNDIIEMDKLERRKVQLDNQPIDFTGFMADLENLTG 370

Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
           L    K +         +P  I+ D   ++QI  N++ NA+ FT  G +I++      N+
Sbjct: 371 LLVQPKGLKFIMEPELPLPEKIITDGTRLRQILWNLIGNAVKFTQQG-KIVVRVRREGND 429

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ-IRGEGTGLGLPLAKAMVDANMGKFYI 794
            +   V D+G+G+   E +K    + Q+ +S       GTG+GL ++K +  +  G   +
Sbjct: 430 RLTFEVEDSGMGIPEDEQDKIFAMYYQVKDSNGGRPATGTGIGLAVSKRLAQSMGGDITV 489

Query: 795 FSTPAKGTLIEIIF 808
            ST   G+   +  
Sbjct: 490 KSTQGSGSCFTLTI 503



 Score = 41.9 bits (97), Expect = 0.44,   Method: Composition-based stats.
 Identities = 16/124 (12%), Positives = 35/124 (28%), Gaps = 5/124 (4%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN-TWYGKTTLWPIE 153
               +  +    G    +++G+   DV      +      + + R N +   +  L   +
Sbjct: 177 FSGCNRAMELLTGKSEKQLVGLTPKDVYAPDIAEKVMETDEKVFRHNVSLTYEQWLVYPD 236

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
           G       +L  +P Y R  +  G  GFG           +   +   +  +        
Sbjct: 237 GRKACF--ELRKVPFYDRVGKRHGLMGFG--RDITERKRYQDALENASRDKTTFISTISH 292

Query: 214 HSSV 217
               
Sbjct: 293 ELRT 296



 Score = 40.4 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 21/224 (9%), Positives = 54/224 (24%), Gaps = 10/224 (4%)

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
           V  L E       ++   +       E +    E+   +N     +++          + 
Sbjct: 77  VEQLEESRQRLSRLVDKLEVMRYRDLELNKQLTENIAQLNQEIVEREKAEKAHLQVVDKL 136

Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVD 358
            E + H           +   L    +D  P   +  +        N +  LLT      
Sbjct: 137 KEEMGH--REQAQVELGQQSALLRSFLDASPDLVYYRNEDNEFSGCNRAMELLTGKSEKQ 194

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
            +        L      + + A K +           +      + +             
Sbjct: 195 LVG-------LTPKDVYAPDIAEKVMETDEKVFRHNVSLTYEQWLVYPDGRKACFELRKV 247

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
              ++  +     G   +  + +  +  +E       + +   S
Sbjct: 248 PFYDRVGKRHGLMGFGRDITERKRYQDALENASRDKTTFISTIS 291


>gi|163794580|ref|ZP_02188551.1| Signal transduction histidine kinase [alpha proteobacterium BAL199]
 gi|159180304|gb|EDP64827.1| Signal transduction histidine kinase [alpha proteobacterium BAL199]
          Length = 860

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 124/623 (19%), Positives = 228/623 (36%), Gaps = 31/623 (4%)

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244
            + R  +    L    D +            +V+  +   F+         + ++  +  
Sbjct: 78  RMLRGVSTWLRLNPEADFRTDKTLLALATVMNVDPNETFAFAVIDSSGDAWLLDETLAGR 137

Query: 245 EYYAHKDD---VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301
            +          + + +   +     +        T+ +   T+        + +  +  
Sbjct: 138 PFDITSRPYFPSIASAEIGRIAYGPRTTNANTGSDTLPVFLKTRHGGQSITVSTAISATR 197

Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY---ANPSFLLLTKYKSVD 358
             +     + S  F        E          V+S G+  +     P +      ++  
Sbjct: 198 IDTVLRDLTRSDQFSTSIVRNDE---------AVFSSGHASHPPPVGPRYEKWLAGRTES 248

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
           D+        L           +  V + R D               +      +     
Sbjct: 249 DVRDVFVQDKLDSVDCAQTIPHLPFVTIARVD----------KISVLDHWFLYLIGVATL 298

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
                         I     +       ++     L +       GIA I  +G  L  N
Sbjct: 299 TVITGGLAVWSTRTIGKLLSELEHEHSALQKNERLLSATFHHAGVGIANIGLDGKFLMVN 358

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
              SK+  +    +L   F         +  +  + ++L   +R+T             +
Sbjct: 359 ERFSKIVDHEPSSLLSMSFDDITHPEDRAASHEGVRDLL-NGVRRTYVAEKRYIGSHGDI 417

Query: 539 LSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
           +  ++    L         +   + DIS+ ++ +  L  A   AE+ +  KS+FLA +SH
Sbjct: 418 VWTQLTGALLTKEDGSPDYFISVIEDISDRRRAQESLRLALVDAERANQAKSEFLATISH 477

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           E RTPL AI GFSE++  + FG LG+P+Y EYA+ I  S   +L +VN  LD+S  E+G 
Sbjct: 478 EFRTPLNAISGFSEMLACRYFGDLGSPKYEEYAHNIWSSSQHLLQLVNATLDLSSAEAGN 537

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714
             L  EPV + E V + +  + +      I    S   + P + AD  +++QI LN+LSN
Sbjct: 538 PALTIEPVDIAEIVDDCVRSLTVEFERGGITTSVSVQPDRPPLHADAGAIRQILLNLLSN 597

Query: 715 AIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           A+  TP GG I +     S++ V++ V DTG+G+  + +++   PF  I  +     +G 
Sbjct: 598 AVKATPPGGSISVRVEANSDKHVLV-VSDTGMGVPEHLVDRMTDPFTVIGGNAYHSRDGK 656

Query: 775 GLGLPLAKAMVDANMGKFYIFST 797
           GLGL + K++V  + G   I S 
Sbjct: 657 GLGLAIVKSLVQRHRGDLRIESR 679



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/262 (9%), Positives = 66/262 (25%), Gaps = 22/262 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH-IDPNNHIGDLLKR-QNTWYGK 146
           I   G    ++E   K + +    ++ M   D++        +  + DLL   + T+  +
Sbjct: 348 IGLDGKFLMVNERFSKIVDHEPSSLLSMSFDDITHPEDRAASHEGVRDLLNGVRRTYVAE 407

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                  G    V   L    +   +     F    ++         +   +        
Sbjct: 408 KRYIGSHGDI--VWTQLTGALLTKEDGSPDYF--ISVIEDISDRRRAQESLRLALVDAER 463

Query: 207 LHEIKKGHSSVEKEKY----------------DIFSQQSPPPHLRMKNKVSSLTEYYAHK 250
            ++ K    +    ++                  F     P +    + + S +++    
Sbjct: 464 ANQAKSEFLATISHEFRTPLNAISGFSEMLACRYFGDLGSPKYEEYAHNIWSSSQHLLQL 523

Query: 251 DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310
            +           +   ++   +    ++    +    F      +  S +      H  
Sbjct: 524 VNATLDLSSAEAGNPALTIEPVDIAEIVDDCVRSLTVEFERGGITTSVSVQPDRPPLHAD 583

Query: 311 LSAYFDEGENLTPETVDKCPIP 332
             A      NL    V   P  
Sbjct: 584 AGAIRQILLNLLSNAVKATPPG 605


>gi|29346593|ref|NP_810096.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides thetaiotaomicron VPI-5482]
 gi|29338489|gb|AAO76290.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one component system) [Bacteroides
            thetaiotaomicron VPI-5482]
          Length = 1336

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 96/494 (19%), Positives = 184/494 (37%), Gaps = 31/494 (6%)

Query: 333  FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
            F     G L +AN  FL        ++I           A  ++                
Sbjct: 686  FAAKEDGTLIFANRQFLHNHGIPESEEIGKLKIYE---IAGDMNTQEDWHERCKDILHGG 742

Query: 393  CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
              +  A   +       +           +             +  +    + +++   +
Sbjct: 743  SRSFVAHHPSKVSKNILAYEGIMYNVTNDSGEESYWSF---SHDISERLHYEAQIKRLNL 799

Query: 453  QLCSILEATSDGIAI--INREGIILSTNR-AVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
             + + ++    GI +  IN +   +  NR + ++       + + K    +         
Sbjct: 800  IMDTTIDNLPAGIVVKEINNDFRYIYRNRESYNRNLCI--GESIGKNDFDYYPPEVAEKK 857

Query: 510  NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWK 565
                T + +    + L   T G  K    + L     ++               DI+E +
Sbjct: 858  REEDTLVATTG--RGLHWTTEGKDKNGNEIILDKRKIRVDGDELSSPIIVSIEWDITELE 915

Query: 566  QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
            + K +L  +K+ AE     KS FLA +SHEIRTPL AI+GFS +I               
Sbjct: 916  KIKRELQTSKEKAEMSDKLKSAFLANMSHEIRTPLNAIVGFSHLIAE----SENKEERKT 971

Query: 626  YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
            +   ++ +   +L ++N++LD+SKIESG +     P++++    E          +  + 
Sbjct: 972  FYEIVEANNERLLQLINEILDLSKIESGIIEFTSAPININSLCKEVHDAHVFRTPQ-GVQ 1030

Query: 686  IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-SNEEVILRVRDT 744
            +    + N   I  D   V Q+  N++ NA  FT +G    IS  +     +++  V DT
Sbjct: 1031 LIYEPSENGLVIETDKNRVFQVFSNLIGNAFKFTKAGS---ISYGYKLVGNQIVFHVTDT 1087

Query: 745  GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
            G G+   ++ +  + F ++ N      +GTGLGL + K +V+   G+  + S   +GT  
Sbjct: 1088 GTGIEPEKIGRVFERFAKLNNY----AQGTGLGLSICKTIVERLGGEISVSSVVGQGTTF 1143

Query: 805  EIIFPLYDTSHPHD 818
                P Y++    +
Sbjct: 1144 TFTLP-YESEQSTE 1156



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 31/273 (11%), Positives = 74/273 (27%), Gaps = 14/273 (5%)

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDI 360
           +Y       ++    ++      E      I  ++Y+  +  +          Y  V   
Sbjct: 532 QYRDITQRSNVKRQLEQVNRNLREIQKVAQIGQWMYNTRDNVFH------YMGYTGVLCE 585

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
           E +  +S       + + + +      R +   +   +  + ++   E            
Sbjct: 586 ESSRSISLEKYQEFIVEEDRLSFTSWCRKNEEGLNEESISYRVRVAGEIYYMRLQAYLRD 645

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
                 +    G      D +  +  +      L   +    + I     +G ++  NR 
Sbjct: 646 ELPNG-SCNIEGYIQNITDIQRRRNDI----NTLTHAINNAKESIFAAKEDGTLIFANRQ 700

Query: 481 VSKLFGYPVEDILRKPFTVFLEQN--TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
                G P  + + K     +  +  T    +    +IL    R  +       +K    
Sbjct: 701 FLHNHGIPESEEIGKLKIYEIAGDMNTQEDWHERCKDILHGGSRSFVAHHPSKVSKNILA 760

Query: 539 LS-LRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570
              +   +        Y    HDISE    + +
Sbjct: 761 YEGIMYNVTNDSGEESYWSFSHDISERLHYEAQ 793



 Score = 43.9 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 26/184 (14%), Positives = 58/184 (31%), Gaps = 20/184 (10%)

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
           E      IL+ T+D + +++R GI +      S L+    E +L K     + ++T   +
Sbjct: 431 EADNAQRILKLTADTMLLVDRNGICIDI-DIHSNLWFLQEERLLGKNIFERMPEHTREKV 489

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN 569
                 +L      +               +        P+         DI++    K 
Sbjct: 490 YSTFQTVLREQRSISKNYKLELEDN-----TYYFKCIMYPYDDMVLCQYRDITQRSNVKR 544

Query: 570 KLSHAKKIAEKESS--HKSDFLA----RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
           +L    +   +         ++      V H         +G++ V+  +    +   +Y
Sbjct: 545 QLEQVNRNLREIQKVAQIGQWMYNTRDNVFH--------YMGYTGVLCEESSRSISLEKY 596

Query: 624 IEYA 627
            E+ 
Sbjct: 597 QEFI 600


>gi|307824786|ref|ZP_07655009.1| multi-sensor signal transduction histidine kinase [Methylobacter
            tundripaludum SV96]
 gi|307734144|gb|EFO04998.1| multi-sensor signal transduction histidine kinase [Methylobacter
            tundripaludum SV96]
          Length = 1026

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 97/762 (12%), Positives = 241/762 (31%), Gaps = 64/762 (8%)

Query: 87   WNIDAHG--YLKEISEELPKTIGNYAFKMI--GMRLCDVSDILHIDPNNH-IGDLLKRQN 141
            + +   G       SE +         ++   G ++  +      D     I    +   
Sbjct: 290  YRLRPDGSSCFPFASEAIHDIYRVSPEEVREDGAKVLAIFHPDDYDGIGASIQQSARDLT 349

Query: 142  TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
             W  +  +   +GT     +   ALP    +         G +             +  D
Sbjct: 350  PWCYEYRVKFDDGT--VRWLFGNALPQKEADGS---TLWHGFITDITERKQMEEKLRDSD 404

Query: 202  KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS-----------------SLT 244
                 +      H +V   +  I +  +       +N +                  +  
Sbjct: 405  AFNVSVLNSLTSHIAVLDAQGVIVAANNAWRQFAQENGLLKSSQDMLGFSYLDACNNAFN 464

Query: 245  EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN-SKESFEYL 303
            + Y  +  V++     +L  E  +   +   H+ N  Q+        L  +       + 
Sbjct: 465  QPYGDEASVVREGITAVLDGERETFHLEYLCHSPNQ-QHWFYMNVLPLHGSCRGVVVSHK 523

Query: 304  SHRNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEI 362
            +                     ++    P   + + G +   N +   +T     + I  
Sbjct: 524  NITERKKAEEVALAASQYARSLIEASLDPLVTISAEGKITDVNTATEQVTGAGRDNLIGS 583

Query: 363  AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
                             A +      S             I+        + +      +
Sbjct: 584  D------FADYFTDPGKAREGYQRVFSQGFVTDYPL---AIRHVSGKVTDVLYNASVYRD 634

Query: 423  QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
                 +       +  + ++ + +++    +  SI+E +   +A+ +    I   N A  
Sbjct: 635  GNGNVLGAFAAARDITERKVMEDELKNSEAKFRSIIEVSPVPMALNDELLNITFLNPAFV 694

Query: 483  KLFGYPVEDI---LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK---ITLGSTKEE 536
            + FGY ++DI          + + +            L    ++             K  
Sbjct: 695  QTFGYTLDDIPTVADWWLKAYPDPDYRRWAESTWQTTLEKAKQEQTGFSPMEVAVRCKNN 754

Query: 537  KLLSLRII---IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
             +  + +    +     +  + + ++DI+E KQ + +L        + ++    F   VS
Sbjct: 755  SVKIVLVTAAEVIHNDVAGMHLVVLYDITERKQIEAEL-------TRSNAELEQFAYAVS 807

Query: 594  HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
            H++R PL  +  +   +         N    ++ ++       +  ++  LL+ S+I  G
Sbjct: 808  HDMRQPLRMVTSYL-SLIENALTGQLNEETQQFIDFAVNGAKRMDAMILSLLEYSRI--G 864

Query: 654  KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713
            ++      +S   ++ EA++ +    +     I+ +   + P + A    + ++  N++ 
Sbjct: 865  RVFEAKTRLSSQASLDEALAFLNPELSACGGAIKVT--GDWPELFASRDELTRLLQNLIG 922

Query: 714  NAIHFTPSGGQIIISTTHT-SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
            NA+ +        +    T S   + + VRD G+G+   + ++  K F ++  ++    +
Sbjct: 923  NALKYHDENQPPQVDVHGTISAGSLRVEVRDQGIGIEPSQRDRLFKVFSRL-QARSR-FD 980

Query: 773  GTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFPLYDT 813
            GTG+GL L + +V+ + G   + S    +G +     P+ +T
Sbjct: 981  GTGVGLALCRKIVEHHGGTLGVESAGEGQGCVFWFELPIMNT 1022



 Score =  121 bits (304), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 48/518 (9%), Positives = 131/518 (25%), Gaps = 39/518 (7%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMR----LCDVSDILHIDPNNHIGDLLKRQ 140
           F +  D +   +  ++ + +  G     +IG        + +     + +  +  L +R 
Sbjct: 158 FIYIKDCNYQYQYANQPVQQVFGKALEDIIGKSDDAFFDEATTAKLRENDRRVLGLGERT 217

Query: 141 NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
                +      + +           P+   +    G    GI              K  
Sbjct: 218 AA---ENIYIHKDSSATTRTYFTVKQPLRREDGSIYGL--CGISTDITERKQMEEARKEA 272

Query: 201 DKKFSHLHEIKKGH------SSVEKEKYDIFSQQSPPPHLRMKNKV----SSLTEYYAHK 250
             +   +     G              +   S+     +     +V    + +   +   
Sbjct: 273 LSRLQKIAGRVPGVVYQYRLRPDGSSCFPFASEAIHDIYRVSPEEVREDGAKVLAIFHPD 332

Query: 251 DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES---FEYLSHRN 307
           D             + +    +      +             +     +           
Sbjct: 333 DYDGIGASIQQSARDLTPWCYEYRVKFDDGTVRWLFGNALPQKEADGSTLWHGFITDITE 392

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTK----YKSVDDIEI 362
              +     + +      ++       V    G +  AN ++    +     KS  D+  
Sbjct: 393 RKQMEEKLRDSDAFNVSVLNSLTSHIAVLDAQGVIVAANNAWRQFAQENGLLKSSQDMLG 452

Query: 363 AGGLST---LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
              L       + P   + + ++  +    D               N+++   M  +P  
Sbjct: 453 FSYLDACNNAFNQPYGDEASVVREGITAVLDGERETFHLEYLCHSPNQQHWFYMNVLPLH 512

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
                              + +  +           S++EA+ D +  I+ EG I   N 
Sbjct: 513 -----GSCRGVVVSHKNITERKKAEEVALAASQYARSLIEASLDPLVTISAEGKITDVNT 567

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
           A  ++ G   ++++   F  +     P         + S              + +   +
Sbjct: 568 ATEQVTGAGRDNLIGSDFADYF--TDPGKAREGYQRVFSQGFVTDYPLAIRHVSGKVTDV 625

Query: 540 SLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAK 575
                + +    +         DI+E K  +++L +++
Sbjct: 626 LYNASVYRDGNGNVLGAFAAARDITERKVMEDELKNSE 663



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 60/175 (34%), Gaps = 4/175 (2%)

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469
           S+A   +                ++ E    +  +  +     +L +IL++    I I +
Sbjct: 104 SVATAVLMLRVIPGALSVPSAAQLQAEIQQRKTAEHALRESENKLATILDSVEAFIYIKD 163

Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
                   N+ V ++FG  +EDI+ K    F ++ T + +      +L L  R   E I 
Sbjct: 164 CNYQYQYANQPVQQVFGKALEDIIGKSDDAFFDEATTAKLRENDRRVLGLGERTAAENIY 223

Query: 530 LGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEK 580
           +         +   + + L               DI+E KQ +     A    +K
Sbjct: 224 IHKDSSATTRTYFTVKQPLRREDGSIYGLCGISTDITERKQMEEARKEALSRLQK 278



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 43/361 (11%), Positives = 94/361 (26%), Gaps = 44/361 (12%)

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEI 362
             +   +      E EN     +D      ++        YAN     +      D I  
Sbjct: 130 EIQQRKTAEHALRESENKLATILDSVEAFIYIKDCNYQYQYANQPVQQVFGKALEDIIGK 189

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP-FEKA 421
           +       D    +           R        +A    I  +   +    F       
Sbjct: 190 SD--DAFFDEATTAKLREND----RRVLGLGERTAAENIYIHKDSSATTRTYFTVKQPLR 243

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI---INREG--IILS 476
            +        GI  +  + +  +   +  + +L  I      G+     +  +G      
Sbjct: 244 REDGSIYGLCGISTDITERKQMEEARKEALSRLQKIAGRVP-GVVYQYRLRPDGSSCFPF 302

Query: 477 TNRAVSKLFGYPVEDIL--RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
            + A+  ++    E++             +    +   + +  S                
Sbjct: 303 ASEAIHDIYRVSPEEVREDGAKVLAIFHPDDYDGIGASIQQ--SARDLTPWCYEYRVKFD 360

Query: 535 EEKLLSLRIIIKKLPFSSC---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
           +  +  L         +     +   + DI+E KQ + KL  +                 
Sbjct: 361 DGTVRWLFGNALPQKEADGSTLWHGFITDITERKQMEEKLRDSDAF-------------N 407

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           VS      L ++     V+  Q      N  + ++A       N +L    D+L  S ++
Sbjct: 408 VS-----VLNSLTSHIAVLDAQGVIVAANNAWRQFAQE-----NGLLKSSQDMLGFSYLD 457

Query: 652 S 652
           +
Sbjct: 458 A 458


>gi|289433638|ref|YP_003463510.1| two-component sensor histidine kinase [Listeria seeligeri serovar
           1/2b str. SLCC3954]
 gi|289169882|emb|CBH26422.1| two-component sensor histidine kinase [Listeria seeligeri serovar
           1/2b str. SLCC3954]
          Length = 610

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 80/397 (20%), Positives = 167/397 (42%), Gaps = 27/397 (6%)

Query: 424 FPENMPQNGIEPEDVDTRINKRKM--EIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
             + + +       +  R+ + +   E E  +L S+L   +DG+   +R G ++  N   
Sbjct: 236 GVDEIGELADSFNTLTKRVQEAQAMTERERRKLSSVLAYMTDGVIATDRRGKVILINTPA 295

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
            K+     E    +     L+          +    SL + ++                 
Sbjct: 296 EKMLRVKHESANGRSIIDVLDIGDNFQFEDLMEVDGSLTMDRSTSDKPYILRAN-----F 350

Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
            +I ++  F++     +HDI++ ++   +              + DF++ VSHE+RTPLT
Sbjct: 351 SVIQRETGFNNGVIAVLHDITDQEKVDQE--------------RRDFVSNVSHELRTPLT 396

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           ++  + E + +  +          +          ++ +VNDLL +S+++ G+  L    
Sbjct: 397 SMHSYLEALSDGAW--EDKEIAPRFLEVTQNETERMIRLVNDLLKLSRMDGGREQLEKSF 454

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           V+  +  +  I   +    ++ I+ +         I  D   V Q+  NI+SNA  ++P 
Sbjct: 455 VNFTDFFNHIIDRFE-MMKKETIMFKRHIPKEPVIIEIDEDKVMQVLDNIISNANKYSPD 513

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           GG+I        N E+ + + D G+G+ + +L      F ++  ++     GTGLGL +A
Sbjct: 514 GGRISFYLKKYEN-EIEVSIADEGLGVPDEDLATIFDRFFRVDKARSREMGGTGLGLAIA 572

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
           + +++A+ G+ +     +KGT+I+   P   +  P D
Sbjct: 573 REVIEAHGGRIWAERNKSKGTIIKFTLP--YSDLPED 607


>gi|73538800|ref|YP_299167.1| PAS/PAC sensor hybrid histidine kinase [Ralstonia eutropha JMP134]
 gi|72122137|gb|AAZ64323.1| PAS/PAC sensor hybrid histidine kinase [Ralstonia eutropha JMP134]
          Length = 660

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 91/499 (18%), Positives = 183/499 (36%), Gaps = 27/499 (5%)

Query: 330 PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS-------TLLDAPKLSDNNAIK 382
           P+   V  +    YA    L    +++V+       L         ++    L D +  +
Sbjct: 20  PLVLVVDDNPVTRYATVRVLATAGFRTVEAEIGQRALEIADVSVSAVVLDVNLPDIDGFQ 79

Query: 383 PVMLYRSDRTC--IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
              + R       I       T   + +    +            E           +  
Sbjct: 80  VCRILRGRPETATIPVVHLSATYMADCDKVRGLDAGASAYLTHPAEPAILVATISSLIRA 139

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
              ++ +     +  +I      GI  ++  G  +  N A+  L      ++  +P   F
Sbjct: 140 SAAEQSLRESEARFRAIYHQAIGGICTLDLSGRFVDVNPAMVTLLQRSGAELAGQPVAEF 199

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
             Q+    +      +     + T          + +++ L   I  +  S      + +
Sbjct: 200 APQDWRERVAESTGRLQEHGWQGTF----PLCNAQGEIMHLEWSISAVLQSGVKVAVVSN 255

Query: 561 ISEWKQEKNKLSHAKKIAEKE-------SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
           I++    + +     +  +         +  K DF+A +SHE+R+PL  I  ++ V+   
Sbjct: 256 ITDRVNLERQREQLIEREQAARAAMERLNRMKDDFIAILSHELRSPLNVISIWTHVLNQH 315

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
               + +         ++R+  +   ++ DL+D+S +  GK+ L  E V+  E V  A+ 
Sbjct: 316 ----INSDEGRRGLAAVERNITIQRRLIADLVDVSMLNVGKLKLELERVNPAELVRVAVE 371

Query: 674 LVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
            +Q  A E+ + + T     +      D    +QI  N++SNAI F+P GG + I    +
Sbjct: 372 SMQRQAQERNVTLVTEMPPVLADAAWLDPSRFEQILWNLVSNAIKFSPEGGIVRIEVA-S 430

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
           +   + +RV D G G+T   L      F Q  ++ + +  G GLGL + + +V+ + G  
Sbjct: 431 NGGALRVRVIDHGRGITAEFLPLLFDRFTQSEDANRRQHGGLGLGLAIVRQLVEMHGGTV 490

Query: 793 YIFST-PAKGTLIEIIFPL 810
              S     G+  E+  PL
Sbjct: 491 QASSAGVGLGSTFEVTIPL 509



 Score = 45.0 bits (105), Expect = 0.052,   Method: Composition-based stats.
 Identities = 28/337 (8%), Positives = 91/337 (27%), Gaps = 24/337 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D  G   +++  +   +     ++ G  + + +     +        L+    W G   
Sbjct: 167 LDLSGRFVDVNPAMVTLLQRSGAELAGQPVAEFAPQDWRERVAESTGRLQEHG-WQGTFP 225

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           L   +G  +++   ++A+                +V       +     ++L ++     
Sbjct: 226 LCNAQGEIMHLEWSISAVLQSGVK--------VAVVSNITDRVNLERQREQLIEREQAAR 277

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL-LTSEES 267
              +  + ++ +   I S +   P   +      L ++    +           +T +  
Sbjct: 278 AAMERLNRMKDDFIAILSHELRSPLNVISIWTHVLNQHINSDEGRRGLAAVERNITIQRR 337

Query: 268 SLPEQEDFHTINL-----------NQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
            + +  D   +N+                +    ++Q  ++E    L     P L+    
Sbjct: 338 LIADLVDVSMLNVGKLKLELERVNPAELVRVAVESMQRQAQERNVTLVTEMPPVLADAAW 397

Query: 317 EGENLTPETV-DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
              +   + + +           G +               V  I+   G++        
Sbjct: 398 LDPSRFEQILWNLVSNAIKFSPEGGIVRI--EVASNGGALRVRVIDHGRGITAEFLPLLF 455

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
                 +     +     +  +     ++ +     A
Sbjct: 456 DRFTQSEDANRRQHGGLGLGLAIVRQLVEMHGGTVQA 492


>gi|301163089|emb|CBW22638.1| putative two-component system sensor kinase/response regulator
           fusion protein [Bacteroides fragilis 638R]
          Length = 892

 Score =  305 bits (782), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 102/484 (21%), Positives = 185/484 (38%), Gaps = 29/484 (5%)

Query: 337 SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA 396
             G L +AN  F L  +     D+ +            ++     +       +   +  
Sbjct: 268 RDGTLIFANRQFRLNHRIAEQADLSLIRVFD---VVGDMTCIEDWEERYRSIREGQTLNF 324

Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
            A           +   T       +             +  +    + +++     + +
Sbjct: 325 LAYQPLKHDKNTLAFEGTMYSVTTDDGEETFWSF---THDISERIRYESQIKRFNRIMDT 381

Query: 457 ILEATSDGIAIIN--REGIILSTNR-AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
            +E    GI + +   +   +  NR + ++      E+ +      +             
Sbjct: 382 TMENIPAGIVVKDIENDFRYIYRNRESYNR--DISSENAIGMNDFDYYPPEMAQQKRKED 439

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLR---IIIKKLPFSSCYSLTMHDISEWKQEKNK 570
            EI +      +  I  G  K   LL L    I+++   FS        DI++ +  + +
Sbjct: 440 MEIAATGK--GMHWIMEGKDKNGNLLILDKQKIMVESEDFSPIIVSIEWDITQLELMRRE 497

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           L  +K+ AE     KS FLA +SHEIRTPL AI+GFS +I              EY   +
Sbjct: 498 LIESKEKAETSDKLKSAFLANMSHEIRTPLNAIVGFSRIISESDNA----EERREYYEIV 553

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
           D +   +L ++N++LD+SKIESG +   + PV L     E          +  + +R   
Sbjct: 554 DANNERLLQLINEILDLSKIESGIVEFTYGPVRLHTLCKEIHDAHVFRCPQ-GVELRFDS 612

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-VILRVRDTGVGMT 749
            +    I +D   + Q+  N++ NA  FT  G    +S  +    E V+  V+DTG+G+ 
Sbjct: 613 PDEALSIHSDKNRIFQVFSNLIGNAFKFTTEGS---VSYGYKQEGERVVFYVKDTGLGIE 669

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             +L +  + F ++ N      +GTGLGL + K +++   G+  + S    GT      P
Sbjct: 670 PEKLGRVFQRFAKLNNF----AQGTGLGLSICKTIIERLGGEIAVSSEVGTGTTFTFWLP 725

Query: 810 LYDT 813
           L + 
Sbjct: 726 LENV 729



 Score = 47.3 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/128 (14%), Positives = 37/128 (28%), Gaps = 4/128 (3%)

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           IL+ TSD + ++++ G  L  +   S L+    + +L K     L  +T   +      +
Sbjct: 14  ILQLTSDTLILVDKNGTCLDIDPH-SDLWFLQEDRLLGKNLFNLLPDHTFQKLLPDFRRV 72

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKK 576
               +             E       +                DI+     K +L     
Sbjct: 73  TQQGITVNRNYRLPLEGGETYYFKCIMQPY---DGDKVLCQYRDITARSNVKLQLERTNY 129

Query: 577 IAEKESSH 584
             ++    
Sbjct: 130 ELKEIQKA 137



 Score = 40.4 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/193 (9%), Positives = 48/193 (24%), Gaps = 12/193 (6%)

Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
           ++R  +      + I    +              +    + + G      D +  +  + 
Sbjct: 192 ANRRELLKEYIEYRILLEGQVYYMRQQCYLRNEEEDGNIVLE-GYIQNITDIQRKRNDI- 249

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL----EQN 504
                L   +    + +    R+G ++  NR       + + +              +  
Sbjct: 250 ---NTLTHAINNAKESVYAARRDGTLIFANRQFR--LNHRIAEQADLSLIRVFDVVGDMT 304

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI-IIKKLPFSSCYSLTMHDISE 563
                      I        L    L   K        +  +        +    HDISE
Sbjct: 305 CIEDWEERYRSIREGQTLNFLAYQPLKHDKNTLAFEGTMYSVTTDDGEETFWSFTHDISE 364

Query: 564 WKQEKNKLSHAKK 576
             + ++++    +
Sbjct: 365 RIRYESQIKRFNR 377


>gi|170758751|ref|YP_001785673.1| sensory box histidine kinase [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169405740|gb|ACA54151.1| sensory box histidine kinase [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 615

 Score =  305 bits (782), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 91/397 (22%), Positives = 173/397 (43%), Gaps = 11/397 (2%)

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
           +  +   N+  N ++ +++  R  ++ +         ++  + D I +  R G I+  N 
Sbjct: 192 RQKEEEVNILANKLDQKEMQKRCMEQLLMKNENCYNLLIRNSKDAILVH-RYGKIIFANE 250

Query: 480 AVSKLFGYPVED-ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
            + ++ GY  E           + ++  +++   L  + S      ++        + K 
Sbjct: 251 RLKQMLGYKKEYNFEDIDIKSLIPEDQYNIVKDQLKNLYS-GSEDIVKFEHNVINNKGKT 309

Query: 539 LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK------SDFLARV 592
           +                  +HD++   Q +      KK  E  +  +      ++FL+ +
Sbjct: 310 IQNTSTYVIYDGVPTIFSILHDVTSKIQVEKLEQDVKKNIELLNESREYNKLITEFLSNI 369

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHE++TPL  I    + +         + +  +Y   I ++   ++ ++N+LLD +K++S
Sbjct: 370 SHELKTPLNVIFTAVQ-LLGFYEEDCNDEKQDKYLKLIKQNCYRLMKLINNLLDTTKLDS 428

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712
           G + L+    ++   + E    V  YA  K I I          I  D   +++I LN+L
Sbjct: 429 GYLKLNLVNYNIVNLIEEITLSVTSYAESKGINIIFDTNVEEKIIAVDTDKIERIILNLL 488

Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           SN+I FT  GG I ++    S E V + V+DTGVG+ + +LE   + F Q+  + +   E
Sbjct: 489 SNSIKFTNPGGNIFVNVK-DSGENVYIHVKDTGVGIPSDKLESIFERFFQVDKTLKKNKE 547

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GTG+GL L K+ V+ + G   I S   KGT   I  P
Sbjct: 548 GTGIGLHLVKSFVEMHKGTVTIKSELGKGTEFIIKLP 584


>gi|239624048|ref|ZP_04667079.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239522079|gb|EEQ61945.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 876

 Score =  305 bits (782), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 94/378 (24%), Positives = 162/378 (42%), Gaps = 17/378 (4%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILRKPFTV 499
              +R++         +  +  D   I + + G I      + ++ G  + ++  + F  
Sbjct: 218 HRQRRELVYRSKLFDKLSLSIDDAFIIRDADTGYISYRGLNLERILGISMAEV--ENFYK 275

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF--SSCYSLT 557
            L++     +   +            E++   +   ++   + + + +     +      
Sbjct: 276 GLKEEDALAIREGIRN---PGFSSPYERLVEYTKPNKEKFWMLVRVYRADDLNTPQLITV 332

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
             D +E  + +  L  A   AE+ +  KS+FL+R+SHEIRTPL AIIG + +        
Sbjct: 333 FSDRTEEVRSRQALQEAMMSAERANMAKSEFLSRMSHEIRTPLNAIIGLTTIAAASIRDT 392

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
                  +    I  S   +L ++ND+LD+SKIES KM L  EP  + E V+  +S V  
Sbjct: 393 AKAE---DCLAKITFSSKHLLMLINDVLDMSKIESSKMVLQDEPFDIFELVNGFVSTVYA 449

Query: 678 YANEKRILIRTSFAN--NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
            A EK I  R +          + D   + QI LN+ SNA+ FT  GG I +  +   N 
Sbjct: 450 QAKEKGIEFRETMEGFGEDTVFIGDSLRLNQILLNLSSNAVKFTAPGGCIRLEVSRHRNG 509

Query: 736 E----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
                +   + DTG+GMT   +E+  +PF Q   +   R  GTGLG+ + + ++    G+
Sbjct: 510 NAADVLRFILSDTGIGMTKDAMERIFQPFEQADATISKRYGGTGLGMSITRNLITLMGGQ 569

Query: 792 FYIFSTPAKGTLIEIIFP 809
             I S    GT   +  P
Sbjct: 570 IQIESESGVGTTCIVDIP 587


>gi|148263562|ref|YP_001230268.1| multi-sensor signal transduction histidine kinase [Geobacter
           uraniireducens Rf4]
 gi|146397062|gb|ABQ25695.1| multi-sensor hybrid histidine kinase [Geobacter uraniireducens Rf4]
          Length = 679

 Score =  305 bits (782), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 98/453 (21%), Positives = 208/453 (45%), Gaps = 17/453 (3%)

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
            L T+L  P LS N  I  +M+  ++              ++         +    AN  
Sbjct: 240 DLDTILVVPILSQNEIIGSLMVRTTND----------RNSFSSRELRFCQLVADASANAI 289

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQ---LCSILEATSDGIAIINREGIILSTNRAV 481
                   +  E  + R  K K+E E+ +     S+ E  S+G+ ++N  G  +  NR+ 
Sbjct: 290 KNASQFKKVLEESDELREIKEKLEKELAEKAVYESLFEHASEGLMVLNARGEPVYVNRSA 349

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNH-YLTEILSLDLRQTLEKITLGSTKEEKLLS 540
             + GY  + +L+   T FL + +  V    ++   L  + R   + +      E++ ++
Sbjct: 350 LDILGYQRDQMLKMTLTDFLAEESFQVGMENHMNFFLGRNFRNKYDLLFKTKCGEKRCVA 409

Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
           + +   +L   +   LT  D++E ++ +++L+ A +  +  +  KS+F+   ++++R P+
Sbjct: 410 VSVSNYRLE-GNYAILTFMDVTEERRAQHQLAEANERLKGVNHLKSEFIYTATNDLRLPV 468

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
             I      +++     L      E+ +    S + ++D++ +LLD S  +S ++ L  E
Sbjct: 469 AVIHSNCSQLRDSDTNNLT-EMQREHLDSAIDSCDRLMDLIEELLDNSNFDSSELELSCE 527

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720
             ++ E++ E  +++  +A +  + +      +      D + ++ +  N++ NAI FTP
Sbjct: 528 DKNIMESIQEVYTVLAPFAWQHGLQMSVEPLQDNISAFFDSKKIQCVLTNLIGNAIKFTP 587

Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
           SGG+I IS +     E+++ V DTG G+    + +    F  + ++     +G+GLGL +
Sbjct: 588 SGGKIGISVSVCDE-ELLVSVTDTGEGIPENYITRIFNEFYHLKSTNSSAKKGSGLGLAI 646

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
            K +VDA+ G+ ++ ST   G+      PL  +
Sbjct: 647 CKRIVDAHSGRMWVDSTLNHGSTFSFALPLSRS 679


>gi|167590124|ref|ZP_02382512.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           ubonensis Bu]
          Length = 861

 Score =  305 bits (782), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 108/635 (17%), Positives = 203/635 (31%), Gaps = 35/635 (5%)

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247
             +    +    L    S +      +     E Y   ++      +   ++        
Sbjct: 117 TGNRAEVSRYLALSILLSRICAASSINRGRLLEGYHYSTRAGVFGLVPTMDEDWPALATP 176

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
             +  VL   +         +  E+               Y G +    +      ++ +
Sbjct: 177 ERRARVLDALRIDFGDERPPAAGERPRV-------RWLPPYVGPVAGQVRIRIAAQAYAD 229

Query: 308 HPSLSAYFDEGENLTPETVDKCPIP------FFVYSHGNLFYANPSFLLLTKYKSVDDIE 361
               +    E        +   P        F       L     S            + 
Sbjct: 230 GAPFAVLVTEYAPEY--LLSWLPEAPSDGIFFITTEDNRLVTMARSAADDQALSGR--LL 285

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                  L         +              I   A   T         A T       
Sbjct: 286 GLDAPRGLTMPDAPVFRDGFVVFRSRLDSTGWILVYAISWTDVAKGVAWQAGTLAAATLL 345

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL-CSILEATSDGIAIINR-EGIILSTNR 479
                 M         +     + +   +  +L  +++E    G+ +I+R +G ++  + 
Sbjct: 346 ALAVMWMLLVRFYRRTLMPVYVRSQRVFDSEELCRNVIEMAPIGLGLISRSDGRLMLASG 405

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
            ++ +     ++      +  L     +    +L         Q +     G     + L
Sbjct: 406 TLTNMIARCGDE------SRTLAAQVVAHYEAFLACGAPEGTMQAV-LPLAGQDDAWRHL 458

Query: 540 SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
            +     +        +   D++  ++   KL  A + A+  ++ KS FLA +SHEIRTP
Sbjct: 459 DIGARGARYQGEDVLIVAAVDVTAKRRIVRKLEEAVRAADSANAAKSSFLAAMSHEIRTP 518

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  I+G  E+++        + R       +  S   +L +VND+LD SKIE+G M +  
Sbjct: 519 LNVILGNLELLERSALDVSQHGR----VQTLRTSAGSLLALVNDILDFSKIEAGAMTVES 574

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
               +   +   +S     A  K + +      +I + +  D     Q+  N+L+NAI F
Sbjct: 575 IEFGVMTVIERELSAFAPIAKAKGLQLFCEMDASISQRMRGDPMRFAQVFGNLLNNAIKF 634

Query: 719 TPSGGQIIISTTHTSN---EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T  G ++    +        E+ + V DTG+G++     K  K F Q+  S   R  GTG
Sbjct: 635 TDEG-RVTARVSIVDACGAPELAVEVEDTGIGISPEHQHKLFKAFSQVDASITRRYGGTG 693

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           LGL L   +V A  G+  + S P  G+   +  PL
Sbjct: 694 LGLALCARLVTAMGGRISVASEPGAGSCFTVRLPL 728


>gi|78776816|ref|YP_393131.1| multi-sensor hybrid histidine kinase [Sulfurimonas denitrificans
           DSM 1251]
 gi|78497356|gb|ABB43896.1| PAS/PAC sensor hybrid histidine kinase [Sulfurimonas denitrificans
           DSM 1251]
          Length = 884

 Score =  305 bits (782), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 95/348 (27%), Positives = 154/348 (44%), Gaps = 19/348 (5%)

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
            ++ G I   N    K+ GY  E ++    ++   Q+ P      L     L+       
Sbjct: 169 TDKNGKITYVNDKYVKISGYSAESLIGSYHSIVKHQDMPDEYFKDLW--FQLENMGIFRG 226

Query: 528 ITLGSTKEEKLLSLRIIIKKLPF----SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
               + K      + + I K+      ++ Y    +D++        L  A+  A+K S 
Sbjct: 227 TIKNNKKNGDYFYIDVTIVKITDPYDNTTEYISIANDVT-------TLIDARLEAQKASQ 279

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
            K  FL+ +SHEIRTPL AI+GF  ++ +Q        ++ +Y   I  SG  +L I+ND
Sbjct: 280 AKEYFLSNMSHEIRTPLNAILGFVNLLIDQDLSK----QHRKYLEIILNSGENLLSIIND 335

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLR 702
           +LD SK+ SG+  +     S+   +S  + L    AN K I I +     IP  + AD  
Sbjct: 336 ILDFSKLRSGEFTIEPRIFSIHNEISHTLELFVASANLKEITITSFIDPVIPKELYADSL 395

Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
            +KQI  N LSNAI FT  GG I +  T   N  + + V+D G+G+   ++      F Q
Sbjct: 396 RIKQILSNFLSNAIKFTRVGGHIHVEATCK-NRTLRVSVQDNGIGIAAGDISNIFTAFTQ 454

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
              ++     GTGLGL +   +     G  ++ S   +G+   +  P+
Sbjct: 455 AGGAEVEHMVGTGLGLSICNQLSKHMNGSVHVVSELGQGSTFWVQLPV 502



 Score = 45.8 bits (107), Expect = 0.027,   Method: Composition-based stats.
 Identities = 13/77 (16%), Positives = 26/77 (33%), Gaps = 1/77 (1%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGK 146
             D +G +  ++++  K  G  A  +IG     V      D     +   L+    + G 
Sbjct: 168 KTDKNGKITYVNDKYVKISGYSAESLIGSYHSIVKHQDMPDEYFKDLWFQLENMGIFRGT 227

Query: 147 TTLWPIEGTNLYVPIDL 163
                  G   Y+ + +
Sbjct: 228 IKNNKKNGDYFYIDVTI 244


>gi|254429445|ref|ZP_05043152.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Alcanivorax sp. DG881]
 gi|196195614|gb|EDX90573.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Alcanivorax sp. DG881]
          Length = 782

 Score =  305 bits (782), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 72/251 (28%), Positives = 129/251 (51%), Gaps = 8/251 (3%)

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
            + +++          S +S+FLA +SHEIRTPL  IIG  +++K        +      
Sbjct: 382 LEQRVTERTGELNAALSARSEFLAVMSHEIRTPLNGIIGTVDMLKGTPL----DDEQRHN 437

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
            N I++SGN +L+++ND+LD S+IE+GKM +     +L   ++E+++L Q  A+     +
Sbjct: 438 LNVIEQSGNSLLNLINDILDYSRIEAGKMPIEQTSFNLFNLINESLALFQHKAHVHSNTL 497

Query: 687 RTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN--EEVILRVRD 743
               A ++    L D   ++QI +N++SNA+ FT +G  I +      +  +     V D
Sbjct: 498 TLEIAPHVGERCLGDPVRLRQILVNLISNAVKFTDNG-TITVRVQRDPDNADYAFFEVHD 556

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           +G+G++  +  +    F Q  +S   R  GTGLGL + + +V+   G+  + S P +G+ 
Sbjct: 557 SGIGISEEQQRRLFDHFQQGDSSTSRRYGGTGLGLAICRQLVEIMGGEIGVDSQPKQGSR 616

Query: 804 IEIIFPLYDTS 814
                P+  T 
Sbjct: 617 FWFRLPIPSTE 627


>gi|119490652|ref|ZP_01623057.1| hybrid sensory kinase [Lyngbya sp. PCC 8106]
 gi|119453817|gb|EAW34974.1| hybrid sensory kinase [Lyngbya sp. PCC 8106]
          Length = 1064

 Score =  305 bits (782), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 101/398 (25%), Positives = 177/398 (44%), Gaps = 43/398 (10%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRKPFTVFLEQ 503
            +++    +L   LEA   G+++ +  G +   N+   +L     + D   K  +   + 
Sbjct: 438 AELKDSESRLFQYLEALPVGVSVHDITGKLYYANQTSRQLLNIQTLLDAQAKELSQAYQI 497

Query: 504 NTP------SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS-- 555
                              L  ++    +       K   +L + +    +         
Sbjct: 498 YQAGTGKLYPTNALPAVRALKGEIVYIDDLEIHYPNK---ILPIEVWATPIYNEQGQIIY 554

Query: 556 --LTMHDISEWKQEKN------------------KLSHAKKIAEKESSHKSDFLARVSHE 595
                 DI++ KQ +                   +L+ AK+ AE  +  KS F+A +SHE
Sbjct: 555 AIAAFQDITQRKQAEQLLADYNCTLEAQVTQRTQELAEAKEKAEVANVAKSAFIANMSHE 614

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           +RTPL AI+GFS+++   R   L N    E    I+RSG  +L ++N++LD+SKIE+GK+
Sbjct: 615 LRTPLNAILGFSQIM--NRSSNLPNEHQ-ESVKIINRSGEYLLTLINNILDVSKIEAGKI 671

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSN 714
            L+ +   L   + E   L +L +  + + +     +NIP+ I  D   ++++ +N+LSN
Sbjct: 672 TLNSKNFYLVRLLDEIEELFKLKSINQGLQLYFEREDNIPQYIQTDELKLREVLINLLSN 731

Query: 715 AIHFTPSGGQ-IIISTTHTSNEE-----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
           A+ FT  GG  + + T  T   E     +   V DTGVG+ + EL +  + F Q   S +
Sbjct: 732 AMKFTQVGGIYLRVKTRSTPETEPSTQTLYFEVEDTGVGILSEELSQLFEAFSQT-QSGK 790

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
              EGTGLGL +++  V+   G+  + S    GT+   
Sbjct: 791 QAQEGTGLGLAISQKFVELMGGEINVKSQAGVGTIFSF 828



 Score = 41.6 bits (96), Expect = 0.57,   Method: Composition-based stats.
 Identities = 22/165 (13%), Positives = 53/165 (32%), Gaps = 5/165 (3%)

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLT 352
                SF  ++H+   S +   D    L  + ++  P+   V+   G L+YAN +   L 
Sbjct: 420 GELAHSFNQMAHQLQASFAELKDSESRLF-QYLEALPVGVSVHDITGKLYYANQTSRQLL 478

Query: 353 KYKSV-DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411
             +++ D        +  +             +   R+ +  I     L  I +  +  L
Sbjct: 479 NIQTLLDAQAKELSQAYQIYQAGTGKLYPTNALPAVRALKGEIVYIDDL-EIHYPNK-IL 536

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
            +        N+  + +       +    +  ++ +      L +
Sbjct: 537 PIEVWATPIYNEQGQIIYAIAAFQDITQRKQAEQLLADYNCTLEA 581


>gi|182626605|ref|ZP_02954351.1| sensory box histidine kinase [Clostridium perfringens D str.
           JGS1721]
 gi|177908085|gb|EDT70658.1| sensory box histidine kinase [Clostridium perfringens D str.
           JGS1721]
          Length = 821

 Score =  305 bits (782), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 94/388 (24%), Positives = 182/388 (46%), Gaps = 15/388 (3%)

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
           +       +  +    ++ +++E  +L  + E   D I  I+ EG I   N+AV  + GY
Sbjct: 409 LYYVLRINDITEEYKMEKNLKLEEQRLRGVTENIKDLIFTIDVEGKISYVNKAVIDVLGY 468

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
             E+++ K +   L   +   +    ++  + D   T++K+      ++ L+ L  I  +
Sbjct: 469 SEEELIGKNYYDLLLVESNLNIID--SKYFNEDKILTIDKV----RSKKGLVQLESISSR 522

Query: 548 LPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
           +  +      +     +I + ++ +  L +  +  ++    +S+F A +SHE+RTP+  I
Sbjct: 523 IKDNKNNTLGWVRVARNIEDVREIEI-LKNKFEEIKQYDKVRSEFFANLSHELRTPINII 581

Query: 604 IGFSEVIKNQRFGPLGNPR-YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
               +++   +         Y +Y   + ++   +L +VN+L+DI+KI+SG + + F   
Sbjct: 582 YSCIQLLNTSKKNKANFANLYDKYEKTLKQNCFRMLRLVNNLIDITKIDSGFIKMDFINY 641

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
            + +   +    V  Y   K I I          I  D   +++I LN+LSNAI FT  G
Sbjct: 642 DIIKLTEDITMSVIPYVESKNIDIIFDTNCEELEIRCDPDKIERIILNLLSNAIKFTEPG 701

Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
           G+I +S        V +RV+DTG+G+ ++  E   + F Q   S     EG+G+GL L K
Sbjct: 702 GKIEVSI-FADETWVDIRVKDTGIGIPSHMKEFIFERFIQNDKSLNRNKEGSGIGLSLVK 760

Query: 783 AMVDANMGKFYI-FSTPAKGTLIEIIFP 809
           ++V+ + GK ++  S    G+   I+ P
Sbjct: 761 SLVELHEGKVFLRESNE-SGSEFSILLP 787



 Score = 45.0 bits (105), Expect = 0.052,   Method: Composition-based stats.
 Identities = 7/38 (18%), Positives = 17/38 (44%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS 122
             + ID  G +  +++ +   +G    ++IG    D+ 
Sbjct: 445 LIFTIDVEGKISYVNKAVIDVLGYSEEELIGKNYYDLL 482


>gi|170764179|ref|ZP_02633654.2| sensory box histidine kinase [Clostridium perfringens E str.
           JGS1987]
 gi|170661001|gb|EDT13684.1| sensory box histidine kinase [Clostridium perfringens E str.
           JGS1987]
          Length = 821

 Score =  305 bits (782), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 94/388 (24%), Positives = 182/388 (46%), Gaps = 15/388 (3%)

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
           +       +  +    ++ +++E  +L  + E   D I  I+ EG I   N+AV  + GY
Sbjct: 409 LYYVLRINDITEEYKMEKNLKLEEQRLRGVTENIKDLIFTIDVEGKISYVNKAVIDVLGY 468

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
             E+++ K +   L   +   +    ++  + D   T++K+      ++ L+ L  I  +
Sbjct: 469 SEEELIGKNYYDLLLVESNLNIID--SKYFNEDKILTIDKV----RSKKGLVQLESISSR 522

Query: 548 LPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
           +  +      +     +I + ++ +  L +  +  ++    +S+F A +SHE+RTP+  I
Sbjct: 523 IKDNKNNTLGWVRVARNIEDVREIEI-LKNKFEEIKQYDKVRSEFFANLSHELRTPINII 581

Query: 604 IGFSEVIKNQRFGPLGNPR-YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
               +++   +         Y +Y   + ++   +L +VN+L+DI+KI+SG + + F   
Sbjct: 582 YSCIQLLNTSKKNKANFANLYDKYEKTLKQNCFRMLRLVNNLIDITKIDSGFIKMDFINY 641

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
            + +   +    V  Y   K I I          I  D   +++I LN+LSNAI FT  G
Sbjct: 642 DIIKLTEDITMSVIPYVESKNIDIIFDTNCEELEIRCDPDKIERIILNLLSNAIKFTEPG 701

Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
           G+I +S        V +RV+DTG+G+ ++  E   + F Q   S     EG+G+GL L K
Sbjct: 702 GKIEVSI-FADETWVDIRVKDTGIGIPSHMKEFIFERFIQNDKSLNRNKEGSGIGLSLVK 760

Query: 783 AMVDANMGKFYI-FSTPAKGTLIEIIFP 809
           ++V+ + GK ++  S    G+   I+ P
Sbjct: 761 SLVELHEGKVFLRESNE-SGSEFSILLP 787



 Score = 45.0 bits (105), Expect = 0.052,   Method: Composition-based stats.
 Identities = 7/38 (18%), Positives = 17/38 (44%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS 122
             + ID  G +  +++ +   +G    ++IG    D+ 
Sbjct: 445 LIFTIDVEGKISYVNKAVIDVLGYSEEELIGKNYYDLL 482


>gi|110798905|ref|YP_695966.1| sensory box histidine kinase [Clostridium perfringens ATCC 13124]
 gi|110673552|gb|ABG82539.1| sensory box histidine kinase [Clostridium perfringens ATCC 13124]
          Length = 787

 Score =  305 bits (782), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 94/388 (24%), Positives = 182/388 (46%), Gaps = 15/388 (3%)

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
           +       +  +    ++ +++E  +L  + E   D I  I+ EG I   N+AV  + GY
Sbjct: 375 LYYVLRINDITEEYKMEKNLKLEEQRLRGVTENIKDLIFTIDVEGKISYVNKAVIDVLGY 434

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
             E+++ K +   L   +   +    ++  + D   T++K+      ++ L+ L  I  +
Sbjct: 435 SEEELIGKNYYDLLLVESNLNIID--SKYFNEDKILTIDKV----RSKKGLVQLESISSR 488

Query: 548 LPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
           +  +      +     +I + ++ +  L +  +  ++    +S+F A +SHE+RTP+  I
Sbjct: 489 IKDNKNNTLGWVRVARNIEDVREIEI-LKNKFEEIKQYDKVRSEFFANLSHELRTPINII 547

Query: 604 IGFSEVIKNQRFGPLGNPR-YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
               +++   +         Y +Y   + ++   +L +VN+L+DI+KI+SG + + F   
Sbjct: 548 YSCIQLLNTSKKNKANFANLYDKYEKTLKQNCFRMLRLVNNLIDITKIDSGFIKMDFINY 607

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
            + +   +    V  Y   K I I          I  D   +++I LN+LSNAI FT  G
Sbjct: 608 DIIKLTEDITMSVIPYVESKNIDIIFDTNCEELEIRCDPDKIERIILNLLSNAIKFTEPG 667

Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
           G+I +S        V +RV+DTG+G+ ++  E   + F Q   S     EG+G+GL L K
Sbjct: 668 GKIEVSI-FADETWVDIRVKDTGIGIPSHMKEFIFERFIQNDKSLNRNKEGSGIGLSLVK 726

Query: 783 AMVDANMGKFYI-FSTPAKGTLIEIIFP 809
           ++V+ + GK ++  S    G+   I+ P
Sbjct: 727 SLVELHEGKVFLRESNE-SGSEFSILLP 753



 Score = 45.0 bits (105), Expect = 0.052,   Method: Composition-based stats.
 Identities = 7/38 (18%), Positives = 17/38 (44%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS 122
             + ID  G +  +++ +   +G    ++IG    D+ 
Sbjct: 411 LIFTIDVEGKISYVNKAVIDVLGYSEEELIGKNYYDLL 448


>gi|167628685|ref|YP_001679184.1| signal transduction histidine kinase [Heliobacterium modesticaldum
           Ice1]
 gi|167591425|gb|ABZ83173.1| signal transduction histidine kinase [Heliobacterium modesticaldum
           Ice1]
          Length = 909

 Score =  305 bits (782), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 75/267 (28%), Positives = 137/267 (51%), Gaps = 17/267 (6%)

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           +    +    +   + +  KSDFLA +SHEIRTP+ AI+G +E++   +  P       E
Sbjct: 370 RMAEMIDDHVQELRRANEAKSDFLANMSHEIRTPMNAILGMTELLGETQLTP----EQAE 425

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           Y      +G+ +L ++ND+LD+SK+ESG+M L     +L E V +   L+ + A++K + 
Sbjct: 426 YVRICRGAGDTLLYLINDILDLSKVESGRMELQLTQFNLVELVEKTAELMAVRAHKKGLE 485

Query: 686 IRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN-----EEVIL 739
           +       +P +++ D   ++QI +N++ NA+ FT  G +I++      +       +  
Sbjct: 486 LVCHIFPGVPSQVVGDPGRLQQILINLMGNAVKFTERG-EIVLQVERDPDQPGEAGAIRF 544

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V DTG+G+   + E   + F Q  +S   R  GTGLGL +++ +V+   G+ ++ S   
Sbjct: 545 AVSDTGIGIAADKKEVIFERFSQADSSTTRRYGGTGLGLTISRYLVEMMKGRIWVESELG 604

Query: 800 KGTLIEII--F----PLYDTSHPHDCI 820
           KG+       F    P+ + S P + +
Sbjct: 605 KGSTFYFTARFGQADPIEEMSLPVEAL 631


>gi|37527863|ref|NP_931208.1| aerobic respiration control sensor protein ArcB [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|36787299|emb|CAE16380.1| aerobic respiration control sensor protein [Photorhabdus
           luminescens subsp. laumondii TTO1]
          Length = 781

 Score =  305 bits (782), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 86/394 (21%), Positives = 171/394 (43%), Gaps = 16/394 (4%)

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
            +  +    +  + ++ E       + ++E + + L S L+A+ D +   N        N
Sbjct: 122 REKAEQAHLILLDKLKEEMKHREQTQIELEQQSVLLKSFLDASPDLVYYRNENNEFSGCN 181

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
           RA+  L G   + ++        ++     +     ++   ++  T E+  +     +  
Sbjct: 182 RAMELLTGKSQKQLVGLTPNDVYDKEVARKVMKTDEKVFRHNVALTYEQWLVYPDGRKAC 241

Query: 539 LSLRIII--KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
             LR +    ++           DI+E K+ ++ L +        S  K+ F++ +SHE+
Sbjct: 242 FELRKVPFYDRVGKRHGLMGFGRDITERKRYQDALEN-------ASRDKTTFISTISHEL 294

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTPL  I+G S ++ +             Y   I  S   + +I ND++++ KIE  K+ 
Sbjct: 295 RTPLNGIVGLSRILLDTELTS----EQNNYLKTIHVSAITLGNIFNDIIEMDKIERRKVQ 350

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNA 715
           +  +P+     +S+  +L  L    K I    +    +P RI+ D   ++QI  N++ NA
Sbjct: 351 IDNQPIDFTGFMSDLENLSGLLVQPKDIKFVMNPELPLPARIMTDGTRLRQILWNLIGNA 410

Query: 716 IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGEGT 774
           + FT  G +I +   +   E ++  V DTG+G+ + ELEK    + Q+  S       GT
Sbjct: 411 VKFTQKG-EITVRIWYEEGERLLFEVTDTGIGIPHDELEKIFAMYYQVKGSHGGCPATGT 469

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           G+GL ++K +  +  G   + S P +G+   +  
Sbjct: 470 GIGLAVSKRLAQSMGGDIVVESEPGQGSRFTLSI 503


>gi|110806192|ref|YP_689712.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Shigella flexneri 5 str. 8401]
 gi|110615740|gb|ABF04407.1| Sensor protein rcsC [Shigella flexneri 5 str. 8401]
          Length = 949

 Score =  305 bits (782), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 99/495 (20%), Positives = 186/495 (37%), Gaps = 41/495 (8%)

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
             P+   +             + LT  +S    +                    + ++L 
Sbjct: 239 TLPMGVTILDENGHT-----LISLTGPESKIKGDPRWMQERSWFGY----TEGFRELVLK 289

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV---DTRINK 444
           ++      +      +    E    +              +       E         + 
Sbjct: 290 KNLPPSSLSIVYSVPVDKVLERIRMLILNAILLNVLAGAALFTLARMYERRIFIPAESDA 349

Query: 445 RKMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            ++E        I+ +   GI I+   +G+ + +N            +  ++        
Sbjct: 350 LRLEEHEQFNRKIVASAPVGICILRTADGVNILSNELAHTYLNMLTHEDRQR-------- 401

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                    LT+I+       ++      T     L +  +  +    +     + D+S 
Sbjct: 402 ---------LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSS 448

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + +  L    + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R 
Sbjct: 449 RVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR- 506

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
                 ++ S +L+L I++D+LD SKIES ++ +     S  E ++   +        K+
Sbjct: 507 --LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQ 564

Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           + +      ++P  +  D   ++Q+  N+LSNAI FT +G  I++       + + +RVR
Sbjct: 565 LGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG-CIVLHVR-ADGDYLSIRVR 622

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTGVG+   E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+
Sbjct: 623 DTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGS 682

Query: 803 LIEIIFPLYDTSHPH 817
              +  PLY   +P 
Sbjct: 683 QFTVRIPLYGAQYPQ 697


>gi|254424565|ref|ZP_05038283.1| PAS fold family [Synechococcus sp. PCC 7335]
 gi|196192054|gb|EDX87018.1| PAS fold family [Synechococcus sp. PCC 7335]
          Length = 615

 Score =  305 bits (782), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 81/384 (21%), Positives = 154/384 (40%), Gaps = 37/384 (9%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           K+  E  +  +I+ + SDGI +++ +  I++ N   + +FG   +    +     +E   
Sbjct: 255 KLVAEKQRSEAIIYSLSDGIVVVDDQLHIVAINPVAATIFGTKPKLAQGRHCLEIIED-- 312

Query: 506 PSVMNHYLTEILSLDLRQT-----------LEKITLGSTKEEKLLSLRIIIKKLPFSS-- 552
              +   L  +                               +             +   
Sbjct: 313 -RTLYDQLQSVAESQTPALPAGPSSQGSDAQSFELTIERGSIEHYQYIATPVTTEDNRRL 371

Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
              L + +++  KQ                  KS+F+   SHE+RTPLT +    +++  
Sbjct: 372 GVVLLLQNVTNLKQL--------------DQLKSEFVMTASHELRTPLTGMAMSIDLLTE 417

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
                L N    E           + D+VNDLLD+SKIESGK+ +    V   + V +AI
Sbjct: 418 TAKTKLSNNEQ-ELLQTAQEDVERLRDLVNDLLDLSKIESGKLEVDKTTVDPRQLVEKAI 476

Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
            L+++ + +K+I + +  A+N+P++  D+  +  +  N+++NA+ +      I +     
Sbjct: 477 ELLKIQSEDKQIEVSSQTASNLPKVEVDVNKITWVMTNLIANALRYAKE--TIEV-IAKR 533

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
               + + V D G G+      K    F Q+    +    G+GLGL + K ++ A+ G  
Sbjct: 534 HGTWISIAVADDGPGIDPAYQTKIFDKFVQVK--TEKDVGGSGLGLAICKEIIKAHGGTI 591

Query: 793 YIFSTPAKGTLIEIIFPLYDTSHP 816
           ++ STP  G+      P+   S P
Sbjct: 592 WVDSTPGHGSTFTFTLPV-TASTP 614


>gi|218531282|ref|YP_002422098.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium
           chloromethanicum CM4]
 gi|218523585|gb|ACK84170.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium
           chloromethanicum CM4]
          Length = 1065

 Score =  305 bits (782), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 96/764 (12%), Positives = 213/764 (27%), Gaps = 63/764 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI-GDLLKRQNTWYGKT 147
           +D    + +++ E  +       +++G    +V       P   +    ++ +     + 
Sbjct: 188 LDRDFRILQMNAEGFRLEERPPGEVLGRSHWEVYPGSERMPIGQMYLRAMRGRMPLTLEH 247

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                +G   ++ +     P          +R                   R        
Sbjct: 248 LYVWPDGHAAWLEVRAYPHP----EGLALFYRNVTERREREEALREAEARLRALADNLPG 303

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE- 266
             + +     +               +   +  ++L +  A  + +L   +  L  +E  
Sbjct: 304 GMVYQIAMDRDGSNRRFLYVSRGFERMTGLSAEAALLDPAAAYNLILPEYRESLAAAEHV 363

Query: 267 -----SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES---FEYLSHRNHPSLSAYFDEG 318
                +    +  F   +      +      +                +   +     E 
Sbjct: 364 AIRDLAPFDFETPFRRSDGEVRWSRIISAPRRQPDGSLVWDGIQFDDTDRKQVEERLRES 423

Query: 319 ENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
           E       +      +     G+  Y N  +   T   +        G            
Sbjct: 424 EAKFQAIANSIDQMVWSTRPDGHHDYFNQRWYDFTGVPA----GSTDGKDWEDIVHSDDR 479

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
                      +         RL   +                 ++        G   + 
Sbjct: 480 ARTWTSWRECLATGEPYRIEYRL---RHRTGQYRWTLGRALPMRDEAGRITRWFGTCTDI 536

Query: 438 VDTRINKRKMEIEVMQLCSIL-------EAT----SDGIAIINREGIILSTNRAVSKLFG 486
            D    +  +      L  ++       +      +D + +   +  I + N A + L G
Sbjct: 537 QDLVEAREVLARSREDLERLVAERTADRDRMWRLSTDVMLVARYDAAIEAVNPAWTTLLG 596

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
           +   +++   F   +  +  +     + ++       TL        K+     L     
Sbjct: 597 WDERELIGSAFMDLVHPDDVAATLAEVGKLSEG--LTTLRFENRYRQKDGSYRWLSWTAV 654

Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES--SHKSDFLARVSHEIRTPLTAII 604
                        DI+  K+    L+  ++   +             ++H+    LT I+
Sbjct: 655 PAED--LIHAVGRDITAEKEAAQALAETEEALRQAQKMEAVGQLTGGIAHDFNNLLTGIV 712

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           G  ++++  R           YA     S N    + + LL  ++    +  L  +PV+ 
Sbjct: 713 GSLDMMQ-TRIAQGRTDTIERYAKAAMSSANRAAALTHRLLAFAR----RQPLDPKPVNA 767

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724
           +  V+    L++    E  I +    A  +   L D   ++   LN+  NA    P GG+
Sbjct: 768 NTLVTSLEDLLRRTIGEA-ISLEIVTAGGLWPTLCDPHQLESAVLNLAINARDAMPDGGK 826

Query: 725 IIIST--------------THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           + I T                   + + + V DTG GM    + +A  PF          
Sbjct: 827 LTIETCNTHLDRAYAKLHPGVEPGQYICICVTDTGTGMPPDVVARAFDPFFTTKP----I 882

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           G+GTGLGL +       + G   I+S   +GT ++I  P +  +
Sbjct: 883 GQGTGLGLSMIYGFARQSEGHAKIYSEVGQGTSVKIYLPRHRGA 926



 Score =  177 bits (449), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 56/517 (10%), Positives = 137/517 (26%), Gaps = 23/517 (4%)

Query: 82  TVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN 141
            +   W           +E   + +G+     +G R  D+   +  D    I   +  + 
Sbjct: 56  PMFVAW--GPELGFLY-NEPYAEILGDKHPAALGSRFHDIWAEIWDDIAPLIDRAMAGEA 112

Query: 142 TWY-GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
           TW      +    G +       +  P+     E  G   F                +  
Sbjct: 113 TWAENLPLVMNRHGYDERTWFTFSYSPVRDDEGEVGGM--FCACTETTAKVKAEEALRAS 170

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL--RMKNKVSSLTEYYAHKDDVLKTEK 258
           + + S + E       +    + I    +    L  R   +V   + +  +         
Sbjct: 171 EARASGVLEGMGEGFMLLDRDFRILQMNAEGFRLEERPPGEVLGRSHWEVYPGSERMPIG 230

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
              L +    +P   +   +  + +          +    +  Y +            E 
Sbjct: 231 QMYLRAMRGRMPLTLEHLYVWPDGHAAWLEVRAYPHPEGLALFYRNVTERREREEALREA 290

Query: 319 ENLTPETVDKCPIP----FFVYSHG---NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
           E       D  P        +   G      Y +  F  +T   +   +        L+ 
Sbjct: 291 EARLRALADNLPGGMVYQIAMDRDGSNRRFLYVSRGFERMTGLSAEAALLDPAAAYNLIL 350

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
                   A +   +   D             + +         I   +       +  +
Sbjct: 351 PEYRESLAAAE--HVAIRDLAPFDFE---TPFRRSDGEVRWSRIISAPRRQPDGSLV-WD 404

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
           GI+ +D D +  + ++     +  +I  +    +     +G     N+      G P   
Sbjct: 405 GIQFDDTDRKQVEERLRESEAKFQAIANSIDQMVWSTRPDGHHDYFNQRWYDFTGVPAGS 464

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
              K +   +  +  +       E L+      +E      T + +    R +  +    
Sbjct: 465 TDGKDWEDIVHSDDRARTWTSWRECLATGEPYRIEYRLRHRTGQYRWTLGRALPMRDEAG 524

Query: 552 S--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
               +  T  DI +  + +  L+ +++  E+  + ++
Sbjct: 525 RITRWFGTCTDIQDLVEAREVLARSREDLERLVAERT 561



 Score = 81.6 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 45/423 (10%), Positives = 104/423 (24%), Gaps = 41/423 (9%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWY 144
            W+    G+    ++      G  A    G    D+              + L     + 
Sbjct: 438 VWSTRPDGHHDYFNQRWYDFTGVPAGSTDGKDWEDIVHSDDRARTWTSWRECLATGEPYR 497

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN-RVDNDPRALGKRLDKK 203
            +  L    G   Y      ALP+       +  R FG       +      L +  +  
Sbjct: 498 IEYRLRHRTG--QYRWTLGRALPMRDEAGRIT--RWFGTCTDIQDLVEAREVLARSREDL 553

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS--------------SLTEYYAH 249
              + E       + +   D+         +   N                 +  +    
Sbjct: 554 ERLVAERTADRDRMWRLSTDVMLVARYDAAIEAVNPAWTTLLGWDERELIGSAFMDLVHP 613

Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
            D      +   L+   ++L  +  +   + +           ++               
Sbjct: 614 DDVAATLAEVGKLSEGLTTLRFENRYRQKDGSYRWLSWTAVPAEDLIHAVG------RDI 667

Query: 310 SLSAYFDEGENLTPETVDKCP--IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
           +      +    T E + +          + G     N     +    S+D ++      
Sbjct: 668 TAEKEAAQALAETEEALRQAQKMEAVGQLTGGIAHDFNNLLTGIVG--SLDMMQTRIAQG 725

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
                 + +                 +A + R          +  +T +         E 
Sbjct: 726 RTDTIERYAKAAMSSANRAAALTHRLLAFARRQPLDPKPVNANTLVTSLEDLLRRTIGEA 785

Query: 428 MPQNGIEPEDVDTRI-NKRKMEIEVMQLC-SILEATSDGIAIINREGIILSTN----RAV 481
           +    +    +   + +  ++E  V+ L  +  +A  DG      +  I + N    RA 
Sbjct: 786 ISLEIVTAGGLWPTLCDPHQLESAVLNLAINARDAMPDG-----GKLTIETCNTHLDRAY 840

Query: 482 SKL 484
           +KL
Sbjct: 841 AKL 843


>gi|237746860|ref|ZP_04577340.1| two-component system sensor histidine kinase [Oxalobacter
           formigenes HOxBLS]
 gi|229378211|gb|EEO28302.1| two-component system sensor histidine kinase [Oxalobacter
           formigenes HOxBLS]
          Length = 821

 Score =  305 bits (782), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 104/547 (19%), Positives = 203/547 (37%), Gaps = 43/547 (7%)

Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN-LTPETVDKCPIPFFVYSHGN---LFYA 344
              ++  +++  E  +   +    +      +      +    +    +       L +A
Sbjct: 1   MRAVRKENRQIGEMATMEQNTGELSGTQSVADYEYNTLMRLLGVSVSKHLLDEHYTLIWA 60

Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
           N  +  L  +   + +        L       +        + R+ RT       +  + 
Sbjct: 61  NDFYYQLIGWPKEEYVARFHNRPDLY-YADHPEEWNELVHAVTRAIRTHQNGYTLVTRMP 119

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL-EATSD 463
               + + +                   +  +  D    +++         SI  +    
Sbjct: 120 RKDGSHVWVNISNVFGEEYINGYPVSYTVMTDVDDLVRMQKE--------QSITYDNLPG 171

Query: 464 GI--AIINREGII-LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520
            +    +N  G + L  N    K FGY          +             +   +    
Sbjct: 172 FVAKFQVNENGFLFLEGNERFRKFFGYKQNRADYG-LSNLDTGKNRQAYAQHFPLMRKGK 230

Query: 521 LRQTLEKITLGSTKEEKLLSLRII---IKKLPFSSCYSLTMHDISE-------WKQEKN- 569
               +        K    + L++    I ++  +  Y +   DI++        KQ +  
Sbjct: 231 R---VHFTLQAKDKTGGNVWLQVNADCIDRVHGNPVYLVIYIDITDITEQRELQKQLEER 287

Query: 570 --KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
              L +A + AE+ +  KSDFL+++SH+IRTP+ AIIG +  I           R  +  
Sbjct: 288 SEMLHNALQAAEQANKAKSDFLSQMSHDIRTPMNAIIGMTA-IAGSHLD--DKDRVRDCL 344

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
             I  S  L+L ++N++LD+S+IESG++++  E  SL+E +   ++++Q     KR    
Sbjct: 345 QKITVSSRLLLGLINEVLDMSRIESGRISITEEEFSLNEMLQNIVTIIQPSIMAKRHAFD 404

Query: 688 TSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN-----EEVILRV 741
                     +  D + ++Q+ LNILSNA+ +TP GG+I++S     +            
Sbjct: 405 IQARELQHENVTGDPQHIQQVFLNILSNAVKYTPDGGKILLSIREKPSQTAGYGCYEFVF 464

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
           RD G GM +  L K  KPF +  ++     +GTGLG+ ++K +V    G   + ST   G
Sbjct: 465 RDNGYGMKSEFLRKIFKPFERAEDAAVRAVQGTGLGMAISKNIVQMMDGDIQVESTYGNG 524

Query: 802 TLIEIIF 808
           +   +  
Sbjct: 525 STFTVTL 531


>gi|163732200|ref|ZP_02139646.1| sensory box histidine kinase/response regulator, putative
           [Roseobacter litoralis Och 149]
 gi|161394498|gb|EDQ18821.1| sensory box histidine kinase/response regulator, putative
           [Roseobacter litoralis Och 149]
          Length = 820

 Score =  305 bits (782), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 90/458 (19%), Positives = 174/458 (37%), Gaps = 15/458 (3%)

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
               GL   L   +         V         I   AR    +    +   +       
Sbjct: 123 GPDAGLRAALPDIQRRVEELRPQVRDLSLAG--IQVFAREDAERRAAFSQTLVKLAASIF 180

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
                       +       +    + E+   +  + + ++ D + +++ +G I+  N A
Sbjct: 181 GLIVFLLFALATLLKLHRKGQQVAHESEVLRSRFEAAIASSLDAVLVVDTDGSIIDFNGA 240

Query: 481 VSKLFGYPVEDILRKPFTVFLEQNT-PSVMNHYLTEILSLDLRQTL---EKITLGSTKEE 536
              +FGY   + L       +       +    +   L    ++ +           K  
Sbjct: 241 AETVFGYTRAEALGGDMAEMIVPQHMRDMHRKGMARFLETGHQKIVGAGRVRLEALRKSG 300

Query: 537 KLLSLRIIIK--KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
            +  + + I   ++     +   + DI+   + + +L  A+  A++    KS+ L  +SH
Sbjct: 301 AVFPVELSISLSEVNGERVFVSFLRDITGELEAEAQLRAARDKAQEGERAKSNLLTVMSH 360

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           E+RTPL  I+G   ++    F    + R+    N I  SG L+L  VND+LD+S +E   
Sbjct: 361 EMRTPLNGILGSLALLDKDSF----DDRHKRLLNSISVSGELLLSHVNDVLDLSSLEKET 416

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS-FANNIPRILADLRSVKQIALNILS 713
                    + + + +    +   A  +   +  +  +  +  +    RS++Q  +N+L 
Sbjct: 417 SPREKVIFDITDLLRQVTDSLMANAEARGNSLSFTCLSEGLASVTGAKRSLQQCLVNLLG 476

Query: 714 NAIHFTPSGGQIIISTTHTSNEE-VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           NAI FT SG +I       +  + V +RV DTGVG+    +++    F  I  +   +  
Sbjct: 477 NAIKFTASG-EISAEAERLNGGDLVEIRVSDTGVGIAPENMDRIFDEFVTIDTAYSRQNA 535

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           GTGLGL + K +V+   G     S   +G+L  +  PL
Sbjct: 536 GTGLGLAITKRLVEIMGGTIEADSLLGEGSLFTLRIPL 573



 Score = 43.9 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 18/143 (12%), Positives = 43/143 (30%), Gaps = 11/143 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP--NNHIGDLLKRQ---NTW 143
           +D  G + + +       G    + +G  + ++    H+       +   L+        
Sbjct: 228 VDTDGSIIDFNGAAETVFGYTRAEALGGDMAEMIVPQHMRDMHRKGMARFLETGHQKIVG 287

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF-GIVHVNRVDNDPRALGKRLDK 202
            G+  L  +  +    P++L+         E +G R F   +     + +  A  +    
Sbjct: 288 AGRVRLEALRKSGAVFPVELSISLS-----EVNGERVFVSFLRDITGELEAEAQLRAARD 342

Query: 203 KFSHLHEIKKGHSSVEKEKYDIF 225
           K       K    +V   +    
Sbjct: 343 KAQEGERAKSNLLTVMSHEMRTP 365


>gi|224537976|ref|ZP_03678515.1| hypothetical protein BACCELL_02865 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520413|gb|EEF89518.1| hypothetical protein BACCELL_02865 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 806

 Score =  305 bits (782), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 103/521 (19%), Positives = 196/521 (37%), Gaps = 36/521 (6%)

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEI 362
           +           D  E +        P+   +Y   G L   N   L +     + +   
Sbjct: 306 AELQAKEDRRALDHSEKILRNIYKNLPVGIELYDKDGYLVDMNDKELEIFGLADMKEALG 365

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL----HTIQWNRENSLAMTFIPF 418
                +L + P + ++   K   L   +    + +         +   R++ + +     
Sbjct: 366 V----SLFENPNIPEDVKEK---LRARENVDFSINYDFSKIDRYVTSRRKDVINLQTKVA 418

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN---REGIIL 475
              +   +      I  +  +T     K++        I +    G A  N   R+G   
Sbjct: 419 LLYDSQNQFSNYLFINIDTTETTSAYTKIQEFEHLFLLIGDYAKVGFAHFNIMTRDG--- 475

Query: 476 STNRAVSKLFGYPVEDILRKPF--TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
                  +  G      + +       +     +V+  ++ ++       +L K    + 
Sbjct: 476 YAQNTWYRNLGEKENTPMPQVIGVYSHVHPEDCAVLKQFVGQVKE-GKATSLSKEVRINR 534

Query: 534 KEEKLLSLRIII-----KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
              K     I +     +            +DI+  K+ + KL  A+  AE+    KS F
Sbjct: 535 GNGKYSWTSINVMVRDYRPQDGVIEMLCINYDITPLKETEQKLIIARDKAEELDRLKSAF 594

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
           LA +SHEIRTPL +I+GFS ++              EY   ++ +  L+L +V+D+LD+S
Sbjct: 595 LANMSHEIRTPLNSIVGFSSLLAETD----DREERQEYIKIVETNNELLLQLVSDILDLS 650

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIA 708
           KIESG  +     + ++E+  + I  +++   E  + +          I  D     Q+ 
Sbjct: 651 KIESGTFDFVRSDLDVNESCMKIIKSMEMKVPE-TVDLVFEKYMPDCHIYTDKNRFMQVI 709

Query: 709 LNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
            N ++NA+ FT  G  I +    T+  E+   VRDTG G+   +++   + F ++     
Sbjct: 710 TNFINNALKFTKQG-TIALGYEQTAPHEIKFYVRDTGFGIPKEKIDSIFERFVKLNTF-- 766

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
              +GTGLGL + K++V    GK  + ST  +G+      P
Sbjct: 767 --VQGTGLGLSICKSLVSQMGGKIGVESTEGEGSCFWFTHP 805


>gi|289432510|ref|YP_003462383.1| PAS/PAC sensor signal transduction histidine kinase
           [Dehalococcoides sp. GT]
 gi|288946230|gb|ADC73927.1| PAS/PAC sensor signal transduction histidine kinase
           [Dehalococcoides sp. GT]
          Length = 852

 Score =  305 bits (782), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 112/748 (14%), Positives = 244/748 (32%), Gaps = 82/748 (10%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRL----------CDVSDILHIDPNNHIGD----- 135
             G L   ++   +  G    ++ G              D+   +  D     G      
Sbjct: 159 PDGKLIFANQIFEEVTGYLVSEVTGEDWKSCGLFSRETTDLIIKMFQDRKPDTGQPFELQ 218

Query: 136 LLKRQNT---WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192
           L+ +      + G + +   +    Y+ +  +                        +   
Sbjct: 219 LIHKNGQTCWFSGHSRIINRDNKPSYLQLSAS---------------------DITICKK 257

Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD 252
              + +          +      S         S  +   + R       +T+  A   +
Sbjct: 258 SEKMLRLTRFALEQTTDAIFWTDSEGNFVDVNQSACNSLDYRREDLLKLKVTDIDALITN 317

Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
               E +       + L  +     I+  +   +     +Q +  E    ++   +  L 
Sbjct: 318 QTDWEAHWKNLKNSAYLSFESIHRNISGEEIPVEITANYMQCDKMEYN--VAIARNIHLR 375

Query: 313 AYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
              ++    T  +V+       +V   G++  AN S      Y   +       L+ +  
Sbjct: 376 KEAEKQLKFTSFSVEHTADSVLWVNQSGSIIAANMSACQSLGYTRTEL----CSLNVINI 431

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
            P        K + +        +  + + T     +N   +         +F       
Sbjct: 432 NPVCV-AERWKTLWVRLKQAINFSLESDMFT-----KNGQQIPIEVMCNFLEFEGIDYCC 485

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
            +  +  + +    ++     +     +  SD + +++ +  I   NRA +K      +D
Sbjct: 486 AVLRDITERKKVDARLLRAAEEWRITFDNISDIVFLLDNDFNIQRANRAFTKTLNCQPQD 545

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
           +L K     L       +N       +    Q +        K          I  +  +
Sbjct: 546 VLNKKCYQVLHHADCPKVNCPKLIAFNTKKTQRIAYFEENIDK-----HFEETIDPILDA 600

Query: 552 SCY----SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
           +        T+ D++E  +   +L    ++A        +  A ++HE+  PLT+++GFS
Sbjct: 601 NGLSMGTVHTIKDVTEHHKIAAQLMITDRLA-----SLGELSAGLAHELNNPLTSVLGFS 655

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
           E+I+ +           +    I +      +I+ +LL  ++    +     + V +++ 
Sbjct: 656 ELIQEKIL----PEDLRQDIQIISQEAQRAAEIIRNLLTFAR----RHEPSKDWVDMNQI 707

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF--TPSGGQI 725
           + + +++         I + T+   N+P I AD   ++Q+ LNI+ NA  +  T S G+ 
Sbjct: 708 IHKVLAICNYGQKVHNIQLITNLDPNLPEIKADYFQMQQVLLNIVINA-EYFMTQSHGEG 766

Query: 726 IISTTHTS-NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
            I  +    N+ + + +RD G GM+   L     PF          G+GTGLGL +   +
Sbjct: 767 TIVISSRKFNDSIQISIRDDGPGMSENVLNHIFDPFFTTK----EVGKGTGLGLSIGHGI 822

Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPLYD 812
           +  + GK Y  S+  KG    I  P+  
Sbjct: 823 ITQHGGKLYAESSEGKGATFFIEIPINQ 850



 Score = 78.5 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 35/257 (13%), Positives = 74/257 (28%), Gaps = 15/257 (5%)

Query: 319 ENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
            + + + +   P+       G L +AN  F  +T Y   +          L         
Sbjct: 141 PDFSDKNLPATPLVMGFQPDGKLIFANQIFEEVTGYLVSEVTGEDWKSCGLFSRETTDLI 200

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
                +   R   T       L  I  N +             +  P  +  +    +  
Sbjct: 201 IK---MFQDRKPDTGQPFE--LQLIHKNGQTCWFSGHSRIINRDNKPSYLQLSA--SDIT 253

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
             + +++ + +        LE T+D I   + EG  +  N++      Y  ED+L+   T
Sbjct: 254 ICKKSEKMLRLT----RFALEQTTDAIFWTDSEGNFVDVNQSACNSLDYRREDLLKLKVT 309

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSL 556
                 T      +     +L     L   ++      + + + I    +          
Sbjct: 310 DIDALITNQT--DWEAHWKNLKNSAYLSFESIHRNISGEEIPVEITANYMQCDKMEYNVA 367

Query: 557 TMHDISEWKQEKNKLSH 573
              +I   K+ + +L  
Sbjct: 368 IARNIHLRKEAEKQLKF 384



 Score = 54.3 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 47/462 (10%), Positives = 116/462 (25%), Gaps = 35/462 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWY 144
            +  D+ G   ++++    ++      ++ +++ D+  ++    +       LK      
Sbjct: 276 IFWTDSEGNFVDVNQSACNSLDYRREDLLKLKVTDIDALITNQTDWEAHWKNLKNSAYLS 335

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            ++    I G    +P+++ A  +     E++      I     +  +     K      
Sbjct: 336 FESIHRNISGE--EIPVEITANYMQCDKMEYN----VAIARNIHLRKEAEKQLKFTSFSV 389

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH-KDDVLKTEKYPLLT 263
            H  +     +          S      + R +    ++         +  KT    L  
Sbjct: 390 EHTADSVLWVNQSGSIIAANMSACQSLGYTRTELCSLNVININPVCVAERWKTLWVRLKQ 449

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
           +   SL                   F   +                 + A          
Sbjct: 450 AINFSLESDMFTKNGQQIPIEVMCNFLEFEGIDYCCAVLRDITERKKVDARLLRAAEEWR 509

Query: 324 ETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
            T D      F+  +  N+  AN +F      +  D +        L  A     N    
Sbjct: 510 ITFDNISDIVFLLDNDFNIQRANRAFTKTLNCQPQDVL-NKKCYQVLHHADCPKVNCPKL 568

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
                +  +           I  + E ++          +    +M       +  +   
Sbjct: 569 IAFNTKKTQRIAYFE---ENIDKHFEETI------DPILDANGLSMGTVHTIKDVTEHHK 619

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
              ++ I   +L S+ E  S G+A           N  ++ + G+             + 
Sbjct: 620 IAAQLMI-TDRLASLGE-LSAGLA--------HELNNPLTSVLGFSEL------IQEKIL 663

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
                     +++            +T     E     + + 
Sbjct: 664 PEDLRQDIQIISQEAQRAAEIIRNLLTFARRHEPSKDWVDMN 705


>gi|310828525|ref|YP_003960882.1| hypothetical protein ELI_2950 [Eubacterium limosum KIST612]
 gi|308740259|gb|ADO37919.1| hypothetical protein ELI_2950 [Eubacterium limosum KIST612]
          Length = 913

 Score =  305 bits (782), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 94/386 (24%), Positives = 178/386 (46%), Gaps = 21/386 (5%)

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREG--IILSTNRAVSKLFGYPVEDILR--KPFT 498
            + K+  +  +  ++L     G A ++      +L        + GY  E   +      
Sbjct: 250 AEYKLAKKDREREALLRTIPGGFARLDARDFKTVLWYGADFLDMIGYTKEQFEKELHSQC 309

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCY 554
            ++  +  + +   + E  +       E      + E+++L++ +       S      +
Sbjct: 310 TYIYPDDHARVKKTIAEHQATGQNTVFEVRIKKRSGEQRILTITMCYVDGLDSWDGIPSF 369

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKE----SSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
                DI+E +QE+ +   A + A +     +S K+DFL+ +SH+IRTP+ AI+G + + 
Sbjct: 370 YSVGLDITEERQEQQRQRIALEDAYQAVRVANSAKTDFLSSMSHDIRTPMNAIMGMTAIA 429

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
           +     P    +  +  N I+ S   +L ++N++LD+SKIESGK++L FE   L E + E
Sbjct: 430 RVNLESP---EKVGDCLNKINVSSRHLLSLINEVLDMSKIESGKLDLSFEAAELPELIQE 486

Query: 671 AISLVQLYANEKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
           A  + +    EK+   R         +++ D   ++Q+ LN+LSNAI +TP GG+I +  
Sbjct: 487 ASDMCKALLTEKKHDFRVIVGQVQHEKVITDGDRLQQVFLNLLSNAIKYTPEGGKITLLI 546

Query: 730 THTSN-----EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
               +      +      D G+GM    L +  +PF +  +S+  + +GTGLG+ + + +
Sbjct: 547 NEKPSIIPKKGQYEFIFTDNGIGMEQEFLTQIFEPFSRAEDSRISKVQGTGLGMAITENI 606

Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPL 810
           V    G   + S P KG+   +  PL
Sbjct: 607 VHMMNGTIDVKSEPGKGSQFIVTVPL 632


>gi|298247368|ref|ZP_06971173.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297550027|gb|EFH83893.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 613

 Score =  305 bits (782), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 97/585 (16%), Positives = 203/585 (34%), Gaps = 37/585 (6%)

Query: 238 NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT---LQN 294
           + V             L+T++      + +   E   F      + T  +          
Sbjct: 58  DLVGKYVVERPWWSYSLETQRQIREVMKRAMRGETVRFDIRVCPRPTFYRDIDATIMPFL 117

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTK 353
           +S    EYL             E E      +D  P   +     G + Y N  +   T 
Sbjct: 118 DSTSQGEYLIWTGFDVTERKRLEDEKHF--LIDAIPTIIWTARPDGYIDYLNKQWSNYT- 174

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
              +  IE + G              A+                 RL             
Sbjct: 175 ---LASIEQSSGDDWSKYVHPDDRQKALATWYGMIRTGEPGENEYRLRN--GATGEYRWF 229

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
                   +     +   G   ++ D ++ +  + +  +Q  ++ +A   GI I +  G 
Sbjct: 230 LVHTTPIRDAQGNIVGWCGTSADNHDKKMVEVALRVRELQFRTLFDANIIGIGITDIYGR 289

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTV--FLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
           +   N    ++ G   ED+ R                    + E+L     Q  EK    
Sbjct: 290 VWEANDTYLQMLGGTREDMNRGEVRWDQLTPPEYLERDEKAIQELLESGTCQPYEKE--Y 347

Query: 532 STKEEKLLSLRIIIKKLPFSSC-YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
              + K + + + I  L   S        DI+  K+ +                K +F++
Sbjct: 348 QRPDGKRILVVVGIALLDKESGKAICFFVDITARKELE--------------KRKDEFIS 393

Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650
             SHE++TP+T++    + +  +R    G+ R       ++   + +  +++DLL++SKI
Sbjct: 394 LASHELKTPITSLKMLIQFL-RRRVQKEGDKRTNYALMRMELQVDALKRLIDDLLNVSKI 452

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710
           + G  +   E +  D+ + E I ++Q    +  +++     + +   + D +   Q+  N
Sbjct: 453 QMGLFSYEDEILDPDKVLHETIEVLQPTLADHVLILHGHLHHAL---VCDQQRFNQVVTN 509

Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           +++NA  ++P   ++ I  +  S + + ++V D GVG+   + EK  + F +       +
Sbjct: 510 LVTNAAKYSPEAHEVDIFLS-ESEQWICIKVCDHGVGIPASQREKIFERFNRGAYGTSEK 568

Query: 771 -GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
              G G+GL +   ++    G   + S   KG++  +  P    +
Sbjct: 569 AFSGLGMGLYITYEIITHYHGSITVESEEGKGSIFTVYLPFAQQT 613



 Score = 81.2 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 47/383 (12%), Positives = 103/383 (26%), Gaps = 41/383 (10%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKRQNTWYGKTTL 149
             G + E++  + +  G     ++G  + +       ++    I +++KR     G+T  
Sbjct: 37  RDGRILEVNHTILEDTGMSLNDLVGKYVVERPWWSYSLETQRQIREVMKR--AMRGETVR 94

Query: 150 WPIE---GTNLYVPIDLAALPIYS--RNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
           + I        Y  ID   +P        E+  + GF +              KRL+ + 
Sbjct: 95  FDIRVCPRPTFYRDIDATIMPFLDSTSQGEYLIWTGFDV-----------TERKRLEDEK 143

Query: 205 SHLHEIKKGHSSVEKEKY---DIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV--LKTEKY 259
             L +         +       +  Q S      ++         Y H DD        Y
Sbjct: 144 HFLIDAIPTIIWTARPDGYIDYLNKQWSNYTLASIEQSSGDDWSKYVHPDDRQKALATWY 203

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH----PSLSAYF 315
            ++ + E    E    +           +   +++       +            +    
Sbjct: 204 GMIRTGEPGENEYRLRNGATGEYRWFLVHTTPIRDAQGNIVGWCGTSADNHDKKMVEVAL 263

Query: 316 DEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
              E       D   I   +   +G ++ AN ++L +      D          L     
Sbjct: 264 RVRELQFRTLFDANIIGIGITDIYGRVWEANDTYLQMLGGTREDMNRGEVRWDQLTPPEY 323

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
           L  +     +       TC          + + +  L +  I                I 
Sbjct: 324 LERDEK--AIQELLESGTCQPYEKEYQ--RPDGKRILVVVGIALLDKESGKAICFFVDIT 379

Query: 435 PEDVDTRINKRKMEIEVMQLCSI 457
                    ++++E    +  S+
Sbjct: 380 --------ARKELEKRKDEFISL 394



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/263 (12%), Positives = 74/263 (28%), Gaps = 20/263 (7%)

Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
             +   G +   N + L  T   S++D+     +     +  L     I+ VM       
Sbjct: 33  IVMTRDGRILEVNHTILEDTGM-SLNDLVGKYVVERPWWSYSLETQRQIREVMKRAMRGE 91

Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
            +    R+            +        +   +         +  + +     +E E  
Sbjct: 92  TVRFDIRVCPRP---TFYRDIDATIMPFLDSTSQGEYLIWTGFDVTERKR----LEDEKH 144

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
            L   ++A    I     +G I   N+  S      +E      ++ ++  +        
Sbjct: 145 FL---IDAIPTIIWTARPDGYIDYLNKQWSNYTLASIEQSSGDDWSKYVHPDDRQKALAT 201

Query: 513 LTEILSLDLRQTLEKITL-GSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKN 569
              ++        E     G+T E +   +     +    +   +  T  D  + K  + 
Sbjct: 202 WYGMIRTGEPGENEYRLRNGATGEYRWFLVHTTPIRDAQGNIVGWCGTSADNHDKKMVEV 261

Query: 570 KLSHAKKIAEKESSHKSDFLARV 592
            L        +E   ++ F A +
Sbjct: 262 ALR------VRELQFRTLFDANI 278



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/273 (9%), Positives = 67/273 (24%), Gaps = 14/273 (5%)

Query: 62  VSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV 121
           V+    L+ E  F+ D IP      W     GY+  ++++          +  G      
Sbjct: 133 VTERKRLEDEKHFLIDAIPT---IIWTARPDGYIDYLNKQWSNYTLASIEQSSGDDWSKY 189

Query: 122 SDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF 181
                          + R               T  Y    +   PI        G+   
Sbjct: 190 VHPDDRQKALATWYGMIRTGEPGENEYRLRNGATGEYRWFLVHTTPIRDAQGNIVGW--C 247

Query: 182 GIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP----PHLRMK 237
           G    N          +  + +F  L +       +      ++             R  
Sbjct: 248 GTSADNHDKKMVEVALRVRELQFRTLFDANIIGIGITDIYGRVWEANDTYLQMLGGTRED 307

Query: 238 NKVSSLTEYYAHKDDVLKTEKYPLLTSEE--SSLPEQEDFHTINLNQYTKKQYFGTLQNN 295
                +        + L+ ++  +    E  +  P ++++   +  +         L   
Sbjct: 308 MNRGEVRWDQLTPPEYLERDEKAIQELLESGTCQPYEKEYQRPDGKRILVVVGIALLDKE 367

Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
           S ++  +       +     ++ ++        
Sbjct: 368 SGKAICFFV---DITARKELEKRKDEFISLASH 397



 Score = 50.8 bits (120), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 15/118 (12%), Positives = 40/118 (33%), Gaps = 11/118 (9%)

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRK----PFTVFLEQNTPSVMNHYLTEILSL 519
           G+ ++ R+G IL  N  + +  G  + D++ K             T   +   +   +  
Sbjct: 31  GLIVMTRDGRILEVNHTILEDTGMSLNDLVGKYVVERPWWSYSLETQRQIREVMKRAMRG 90

Query: 520 DL----RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH 573
           +      +   + T     +  ++       +         T  D++E K+ +++   
Sbjct: 91  ETVRFDIRVCPRPTFYRDIDATIMPFLDSTSQ---GEYLIWTGFDVTERKRLEDEKHF 145


>gi|119476632|ref|ZP_01616942.1| sensory box histidine kinase/response regulator [marine gamma
           proteobacterium HTCC2143]
 gi|119449888|gb|EAW31124.1| sensory box histidine kinase/response regulator [marine gamma
           proteobacterium HTCC2143]
          Length = 848

 Score =  305 bits (782), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 82/377 (21%), Positives = 166/377 (44%), Gaps = 15/377 (3%)

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP-SVM 509
             ++ +++  + DG+ I +  G IL  N A   +FGY  ED+  K     +  +    + 
Sbjct: 226 ETRMKTVIGTSLDGVIISDFHGKILEFNPAAEAIFGYRAEDVRGKDIGQIIVPDHLLDLH 285

Query: 510 NHYLTEILSLDLRQTLEK---ITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEW 564
           N  +  + +   ++ + K       S    ++  + + I+         +   + DIS  
Sbjct: 286 NAGMQRMRAKGEKRVVGKGRVQLEASRSSGEIFPIELAIQSAVTDDGEIFIAFLRDISVR 345

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
              + +L  A+  A      K+DFLA +SHEIRTPL  ++G   ++++ +  P  +    
Sbjct: 346 MANQAELVAARDKAMAGEKLKTDFLATMSHEIRTPLNGLLGNMNLLRDTQLSPDQD---- 401

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
            +  Y++ SG L++  ++D+LDI++ ++GK++   EP+ +   + + I   +   +    
Sbjct: 402 RHIGYMETSGRLLMSQISDVLDIARYDAGKLSTKSEPMDISALIQDIIDSQRSAVSLSET 461

Query: 685 LIRTSFANN-IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EVILR 740
            ++  +    +  I +D   ++ + +N++ NA+ FT  G  I ++           + + 
Sbjct: 462 ALKWRWEGAPVNWINSDHDRLQHVMINLIGNAVKFTQRG-TIWVTLQVEVQGASVYLHID 520

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V+DTG G+           F     +      GTGLGL + K  V A  G   + S   K
Sbjct: 521 VKDTGRGIPEELAAHIFDDFVTGNTAYDRDVGGTGLGLSIVKRFVAALNGTIEVTSVLGK 580

Query: 801 GTLIEIIFPLYDTSHPH 817
           G+   +  P+     P+
Sbjct: 581 GSTFTVKMPITQAQEPN 597



 Score = 43.5 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 42/141 (29%), Gaps = 9/141 (6%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH-IDPNNHIGDLLKRQNTWY---- 144
           D HG + E +       G  A  + G  +  +    H +D +N     ++ +        
Sbjct: 244 DFHGKILEFNPAAEAIFGYRAEDVRGKDIGQIIVPDHLLDLHNAGMQRMRAKGEKRVVGK 303

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
           G+  L     +    PI+LA     + + E         +    V    +A       K 
Sbjct: 304 GRVQLEASRSSGEIFPIELAIQSAVTDDGEI----FIAFLRDISVRMANQAELVAARDKA 359

Query: 205 SHLHEIKKGHSSVEKEKYDIF 225
               ++K    +    +    
Sbjct: 360 MAGEKLKTDFLATMSHEIRTP 380


>gi|42782720|ref|NP_979967.1| sporulation kinase A [Bacillus cereus ATCC 10987]
 gi|42738646|gb|AAS42575.1| sporulation kinase A [Bacillus cereus ATCC 10987]
          Length = 510

 Score =  305 bits (782), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 104/535 (19%), Positives = 202/535 (37%), Gaps = 42/535 (7%)

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTK 353
           +S +   + +                +     +  P     +   G + + NPS   +  
Sbjct: 7   SSTQRKRHPNISRRLRNHIQDCSLTEMYASLFEYNPDGIISLNLEGIIIHTNPSAERILG 66

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
           Y S + +E     S L       + +  + V+    +         + +I       L +
Sbjct: 67  YTSSE-LERKSITSIL-------EAHISEQVLQNIKNTEADNQQEYILSIYHKDGFLLDV 118

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
                    Q         ++P +   RI ++K++    +L +++ +    +   + EG 
Sbjct: 119 VTKLVPIFVQNRLTGVYAIMKPLEKSERI-EKKLKESEKRLRTLVNSMPAFVIFKDHEGR 177

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN----HYLTEILSLDLRQTLEKIT 529
            L  N      F +       K  +  ++ N            + E+     RQ L    
Sbjct: 178 WLEANDYALSCFNFHHVPYHGKKDSELIQYNEAYREAFLHCEEVDELAWQ-QRQILHGEE 236

Query: 530 LGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
               +++  L L I    L           +   DI+E K+ +  L  ++K+A       
Sbjct: 237 FIIHRDDFDLILSISKVPLYHPDGSRKGLIVMGRDITELKETEKLLRKSEKLAVV----- 291

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
               A ++HEIR PLT++ GF  ++      P  N     Y + +    + +  I +  +
Sbjct: 292 GQLTAGIAHEIRNPLTSLKGFLTLLL-----PEINEEQKWYIDVMLSEISQMESITSQFM 346

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
            +SK +     L  +  ++   + E ++ +   A    + I     + +  I  D   +K
Sbjct: 347 AMSKPQ----VLAIQTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYVYDIQCDGNQLK 402

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           Q+ +NIL NAI   P+GG I I T       +++R+ D G G+    + +  +PF     
Sbjct: 403 QVFINILKNAIEAMPNGGNIFIQTKPLEGNFILIRIIDEGCGIPEDRISRLGEPFY---- 458

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820
              ++ +GTGLGL +   +++ + GK +I S   KGT+++I  PL   S PH  I
Sbjct: 459 --SLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTVVDIHLPL---SSPHLAI 508


>gi|117618265|ref|YP_855448.1| aerobic respiration control sensor protein ArcB [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
 gi|117559672|gb|ABK36620.1| sensor histidine kinase/response regulator [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 770

 Score =  305 bits (782), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 92/457 (20%), Positives = 187/457 (40%), Gaps = 32/457 (7%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           +++  +   + R  +        L++ Q     S     I      +         +E E
Sbjct: 81  EDSRQRLTRMVRKLQDMRERDLELNS-QLQENISRLNAQIAETNRAETLRQQAIEDLENE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
                  +  +      L S ++ + D +   N +      NRA+ +L G    +++   
Sbjct: 140 VFQREKAQLHLGERTALLRSFIDCSPDLVYYRNEDEQFSGCNRAMEELTGKVEAELIGLT 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CY 554
                + +  S +     ++ + +   T E+        +    LR +     F      
Sbjct: 200 PFDVYKHDIASKVVETDKQVFAQNEPLTYEQWLEYPDGRKAYFELRKVPFFDRFGKRLGL 259

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E KQ ++KL       EK S  K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 260 LGFGRDITERKQYQDKL-------EKASRDKTTFISTISHELRTPLNGIVGLSRMLMDTP 312

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                +P+  +    I  S   + +I ND++D+ K++  ++ +   P+ L   + E  +L
Sbjct: 313 L----DPKQHQQLKTIHLSAVTLGNIFNDIIDLDKLDRRRLEIAPTPIDLPAFLDELETL 368

Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
            ++ A +K + +      ++P+ ++AD   ++Q+  N++ NA+ FT  GG + +      
Sbjct: 369 SRIQAEQKGLYLHFDRDGDVPQFVMADGTRLRQVLWNLVGNAVKFTDEGG-VTVRCLTHP 427

Query: 734 NEE-----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
            +      +   V DTGVG+   + EK    + Q+    +    GTG+GL +++ +V A 
Sbjct: 428 ADTPGKLALHFEVEDTGVGIPRAQQEKIFAMYYQVQG--KKHATGTGIGLAVSRQLVQAM 485

Query: 789 MGKFYIFSTPAKGTLIEIIF---------PLYDTSHP 816
            G+ Y+ S P +G                P+ +   P
Sbjct: 486 GGQLYVDSDPGEGACFTAELEVDCVAAQTPVAEPEMP 522



 Score = 43.5 bits (101), Expect = 0.15,   Method: Composition-based stats.
 Identities = 15/124 (12%), Positives = 34/124 (27%), Gaps = 5/124 (4%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTWYGKTTLWPIE 153
               +  + +  G    ++IG+   DV               +  +      +  L   +
Sbjct: 177 FSGCNRAMEELTGKVEAELIGLTPFDVYKHDIASKVVETDKQVFAQNEPLTYEQWLEYPD 236

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
           G   Y   +L  +P + R  +  G  GFG           +   ++  +  +        
Sbjct: 237 GRKAYF--ELRKVPFFDRFGKRLGLLGFG--RDITERKQYQDKLEKASRDKTTFISTISH 292

Query: 214 HSSV 217
               
Sbjct: 293 ELRT 296


>gi|116748152|ref|YP_844839.1| multi-sensor signal transduction histidine kinase [Syntrophobacter
           fumaroxidans MPOB]
 gi|116697216|gb|ABK16404.1| multi-sensor signal transduction histidine kinase [Syntrophobacter
           fumaroxidans MPOB]
          Length = 611

 Score =  305 bits (782), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 99/529 (18%), Positives = 199/529 (37%), Gaps = 45/529 (8%)

Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPS 347
           +    +       E         +S +         E     P      +     Y + +
Sbjct: 109 HATRPEIVQAREREIGLIIRRSRVSLHEQIFVARRIEPRGIVPPGILRLAT---TYTDAA 165

Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
            LL   + S   +      +TL  +  L          L R+     +   +L T     
Sbjct: 166 GLLDRLWNSFIVVTGMILAATLFLSYVLIRQIKTPINTLVRAAGVIGSGDFKLRTHFHPG 225

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
           +    +            E + +     +D    + ++       +L ++ +   +G+ +
Sbjct: 226 QEFYPL-----------GEAINKMAKNIDDQVEFVAEQ-----KQKLEAVFDGMQEGVMV 269

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
           ++  G I S NRA S+L       + R+P    +        +  LT   +   R    +
Sbjct: 270 LDSRGKIQSFNRAFSELVPNASLSLGRRPLETIMNLELQEACDAALTSDDAGGTRSASLQ 329

Query: 528 ITLGSTKEEKLLSLRI-IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
           I L      ++  + +  +++        +  HDISE K+ +                + 
Sbjct: 330 IIL---DGGRIYDVHVVRLEEERKGLGAIVVFHDISELKRLE--------------KVRQ 372

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
           DF+A VSHE+RTPLTAI G +E + ++     G      +   I R+   ++ +V+DLL 
Sbjct: 373 DFVANVSHELRTPLTAIKGSAETLLSEPSPESGT--LASFLGIILRNSEHMVKMVDDLLQ 430

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706
           ++++ES +      PV+  +A++ A       A+ K++ +  +       + A+   + Q
Sbjct: 431 LARLESRQRGFKPAPVNPADALATAWKACAPQADAKQVGLENALPPAGLEVPAEFDQLVQ 490

Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
           +  N+L N I + P G  + +       + V+  VRD G G+     ++  + F ++   
Sbjct: 491 VFRNLLENGIRYGPPGKNLEVFHKME-GKNVVFGVRDQGPGIARQHQQRIFERFFRLEKH 549

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA----KGTLIEIIFPLY 811
           +      TGLGL + + +V  + G+ ++ S P     +GT      PL 
Sbjct: 550 RSTLPGSTGLGLAICRHIVRNHGGRIWVQS-PNPDGTEGTTFFFSLPLA 597


>gi|319411626|emb|CBQ73670.1| related to histidine kinase (C-terminal fragment) [Sporisorium
            reilianum]
          Length = 1516

 Score =  305 bits (782), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 108/623 (17%), Positives = 202/623 (32%), Gaps = 98/623 (15%)

Query: 274  DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE-GENLTPETVDKCPIP 332
                  ++    +   G  ++            +        ++ GE       D  P  
Sbjct: 491  ARRVYEISAKPMRDAGGFGEHIGGVITLVDVTDSEQKYRMEVEKKGEEYFRTICDSMPQM 550

Query: 333  FFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR 391
             +     G++ + N  +   T     + +                D+         +S R
Sbjct: 551  LWTAKPEGSVDWYNEGWPRFTGLSVQELLTRG------WQHCFHEDDMLETNARWSQSLR 604

Query: 392  TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV 451
            T           +++      +      +     +     G   +               
Sbjct: 605  TGEPYQVMYRCKRYDGVWKWMLGRALPVRDPSTGKITKWYGSCTDCDSEVKALEISRKSQ 664

Query: 452  MQLCSILEATSDGIAIINREGIILST---------------------------------- 477
             QL S++      I  I+R+  I                                     
Sbjct: 665  AQLTSVINHAHVTIWAIDRDATITIAEGPGVRSLRLAPGTPNGSDGDGSGSGNSLPGSVG 724

Query: 478  ----------NRAVSKLFGY------PVEDILRKPF--TVFLEQNTPSVMNHYLTEILSL 519
                      NR              P +   ++        E      +   +   L  
Sbjct: 725  AGTFNARSEENRDAESQTNSQSAVSGPGKRGNQRSMIGRSIYEVWDSPGIREAIGRAL-N 783

Query: 520  DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---------CYSLTMHDISEWKQEKNK 570
                  E        E +    +   ++                     DI++ ++ ++K
Sbjct: 784  GESVVQEMEI-----EGRWFRTQYTPQREESYEHDANEGAIIGVVGASMDITDRRRAEHK 838

Query: 571  LSHAKKI----------AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
            L  +             A++ S  KS+FLA +SHEIRTP+  +IG SE++ +        
Sbjct: 839  LEESMHERSRALAAETAAKEASRIKSEFLANMSHEIRTPIAGVIGLSELLCDTPLSK--- 895

Query: 621  PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
                ++A  I RS + +L ++ND+LD  K+E GKM+L     +L+  + +   ++     
Sbjct: 896  -EQRDFAENIQRSADALLTVINDILDFEKLELGKMDLEKTAFNLNVVIMDTQKMLTFATQ 954

Query: 681  EKRILIRTSFANN-IPRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNE--E 736
            +K +  R     +   +I+ D   ++Q+  N+L+NAI F  +G   + +  T+   +   
Sbjct: 955  KKGLEFRNECQLSFTGQIVGDAGRLRQVLTNLLTNAIKFAAAGAITLRVIETYEDQKSLH 1014

Query: 737  VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
            V   VRDTG G++   L+K  +PF Q   S   R  GTGLGL + K +VD   G   + S
Sbjct: 1015 VHFEVRDTGCGISQTTLKKLFQPFSQADPSFARRFGGTGLGLSICKNLVDLMGGTIGLES 1074

Query: 797  TPAKGTLIEIIFP-----LYDTS 814
               KG+      P     +++TS
Sbjct: 1075 VENKGSNAWFSIPFEKVGVHETS 1097



 Score = 65.0 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 44/437 (10%), Positives = 103/437 (23%), Gaps = 41/437 (9%)

Query: 192 DPRALGKRLDKKFSHLHEI---KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA 248
           D     +     F+ LHE    +   +        +   Q           +++      
Sbjct: 244 DRLVAEQHRSGLFAALHEASQVRATAAWAPPVLTRLTFLQDDQKMFSADMSIAAWHPTDE 303

Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE------Y 302
              +         L +E  S    E  H       ++     +     +  F        
Sbjct: 304 VFSETFNNHYAKSLAAETDSRFANEHGHQPAAPNRSESMESRSATLPHESYFTISIVPTR 363

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIE 361
           L+ R          + E L                S G     N +   + K     D +
Sbjct: 364 LAERRMSPADLQLSKAEQLKEGVFHTIETAIMAMSSDGTTVIRNRACDEVLKIFEKKDPQ 423

Query: 362 IAG---------------------GLSTLLDAPKLSDNNAIKPVMLYRSDRT-CIAASAR 399
             G                      +    +           P+                
Sbjct: 424 DKGKSAPPRKPKQGLAVDMSWLTDVMDCFTEDFSEPFPEENYPIYRASIHGQFTKPVRIG 483

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN-KRKMEIE-VMQLCSI 457
                        ++  P   A  F E++       +  D+    + ++E +      +I
Sbjct: 484 CVATDTGARRVYEISAKPMRDAGGFGEHIGGVITLVDVTDSEQKYRMEVEKKGEEYFRTI 543

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
            ++    +     EG +   N    +  G  V+++L + +     ++     N   ++ L
Sbjct: 544 CDSMPQMLWTAKPEGSVDWYNEGWPRFTGLSVQELLTRGWQHCFHEDDMLETNARWSQSL 603

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI 577
                   + +      +     +      +   S        I++W           K 
Sbjct: 604 RTGEP--YQVMYRCKRYDGVWKWMLGRALPVRDPSTGK-----ITKWYGSCTDCDSEVKA 656

Query: 578 AEKESSHKSDFLARVSH 594
            E     ++   + ++H
Sbjct: 657 LEISRKSQAQLTSVINH 673



 Score = 62.7 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/396 (8%), Positives = 91/396 (22%), Gaps = 15/396 (3%)

Query: 71  ENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH-IDP 129
           E  F         +  W     G +   +E  P+  G    +++             ++ 
Sbjct: 537 EEYFRTICDSMP-QMLWTAKPEGSVDWYNEGWPRFTGLSVQELLTRGWQHCFHEDDMLET 595

Query: 130 NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN-REFSGFRGFGIVHVNR 188
           N      L+    +  +          ++  +   ALP+   +  + +  + +G      
Sbjct: 596 NARWSQSLRTGEPY--QVMYRCKRYDGVWKWMLGRALPVRDPSTGKIT--KWYGSCTDCD 651

Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA 248
            +     + ++   + + +                  +    P    +  +++  T   +
Sbjct: 652 SEVKALEISRKSQAQLTSVINHAHVTIWAIDRDA-TITIAEGPGVRSL--RLAPGTPNGS 708

Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
             D        P      +     E+         ++    G            +    +
Sbjct: 709 DGDGSGSGNSLPGSVGAGTFNARSEENRDAESQTNSQSAVSGP--GKRGNQRSMIGRSIY 766

Query: 309 PSLSAY-FDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
               +    E                         Y            +   I    G S
Sbjct: 767 EVWDSPGIREAIGRALNGESVVQEMEIEGRWFRTQYTPQREESYEHDANEGAIIGVVGAS 826

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
             +   + +++   + +      R   A +A     +   E    M+             
Sbjct: 827 MDITDRRRAEHKLEESMHER--SRALAAETAAKEASRIKSEFLANMSHEIRTPIAGVIGL 884

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
                  P   + R     ++     L +++    D
Sbjct: 885 SELLCDTPLSKEQRDFAENIQRSADALLTVINDILD 920



 Score = 40.8 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/99 (11%), Positives = 27/99 (27%), Gaps = 4/99 (4%)

Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520
               + +++    I   NR    +F       + +     + +   S +   L E   + 
Sbjct: 207 APTPMLVLDHNRRIRMMNRPCESIFLMTGVSCMGQTMDRLVAEQHRSGLFAALHEASQVR 266

Query: 521 LRQTLEKITLGST----KEEKLLSLRIIIKKLPFSSCYS 555
                    L        ++K+ S  + I     +    
Sbjct: 267 ATAAWAPPVLTRLTFLQDDQKMFSADMSIAAWHPTDEVF 305


>gi|291326604|ref|ZP_06125114.2| sensor histidine kinase/response regulator [Providencia rettgeri
           DSM 1131]
 gi|291313686|gb|EFE54139.1| sensor histidine kinase/response regulator [Providencia rettgeri
           DSM 1131]
          Length = 1032

 Score =  305 bits (782), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 96/381 (25%), Positives = 171/381 (44%), Gaps = 24/381 (6%)

Query: 434 EPEDVDTRINKRKMEIEVMQL-CSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVED 491
           + + +   I+ ++  +E      +++  T  G+ +I++E   +   N             
Sbjct: 326 QRKILQPAIDSQQAILENESFNQTLIATTPIGLCVIDKETQQLRFANELAR--------- 376

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
                 T     +  +  N  L ++LS   +             E +L +          
Sbjct: 377 -YWLKITNISTPHDSNEYNELLIKVLSDTGQVKTN-----LKSGEHVLYVVSTATYYQQR 430

Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
                   DI+   + + +L  AK++AE+ +  KS FLA +SHEIRTPL  +IG  E++ 
Sbjct: 431 PVILCAFTDITIQAETEKQLDDAKRLAEEANRAKSTFLATMSHEIRTPLYGLIGTLELLA 490

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
           N         +   + + I  +  L++ ++ D+LDISKIE+ ++ +H +P  L E V + 
Sbjct: 491 NTSLSS----QQAHFIDRISTTSQLLMQLIGDILDISKIEANQIQIHNQPFDLLELVQQT 546

Query: 672 ISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
           + L Q  A +K +L+      N+    + D   ++QI  N+LSNAI FT  G  + I   
Sbjct: 547 VQLYQGIAQQKGLLLFAIIDPNVQANRIGDSARLQQILGNLLSNAIKFTHRG-TVTIELK 605

Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
            ++   ++LRV DTGVG++  +  K  +PF Q   S+     GTGLGL +   ++    G
Sbjct: 606 RSNKNNILLRVSDTGVGISPEQQIKLFEPFYQAH-SEIHAYGGTGLGLFICSKLIKLMDG 664

Query: 791 KFYIFSTPAKGTLIEIIFPLY 811
           +  + S    G+   +  PL 
Sbjct: 665 QISLQSETGVGSSFLVTLPLA 685


>gi|259419178|ref|ZP_05743095.1| PAS/PAC sensor hybrid histidine kinase [Silicibacter sp. TrichCH4B]
 gi|259345400|gb|EEW57254.1| PAS/PAC sensor hybrid histidine kinase [Silicibacter sp. TrichCH4B]
          Length = 825

 Score =  305 bits (782), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 113/562 (20%), Positives = 208/562 (37%), Gaps = 17/562 (3%)

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
           LL ++   L +        L+         TL     +  +Y                  
Sbjct: 23  LLAAQAFRLGKDVQTRIEALSSAATDNLQWTLSQAEVDYLKYRFAAMQVRQRQDLPRLRR 82

Query: 321 LTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
                  +    F   S  +   A P      +      +E A  + +  D      +  
Sbjct: 83  QFDIYYSRI-ATFRESSSYSGVRATPEGGETLERLHQGLLEQAELIDSSDDTLLARSDEL 141

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
           ++ ++    D   +A    +   +   E  + +  +    A      M    +    +  
Sbjct: 142 LRMIVSDGDDVRDLALLGVVLQAETAGEERVLLHELFSRLAIVVLALMGTLALTALVILR 201

Query: 441 RINKRKM-----EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
              + +        E  +  +++ ++ D I + +  G I + N A  ++FGY  E+ +  
Sbjct: 202 LFRRGQRLSMLQAQEAARTEAMVTSSLDAILMADAAGRITAINGAAEEIFGYSEEEAIGL 261

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555
            F   +  +  +   + + +IL                K  ++L + + +     +    
Sbjct: 262 SFDALVLNSPDNSGPNKIDDILR---ESDGRIEMTAQRKNGEILPVEVSLTLSKSNGNQV 318

Query: 556 LT--MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
           L   + DIS   Q + +L  A+  A      K   L  +SHE+RTPLT I+G  +V+  +
Sbjct: 319 LVSYVRDISRRLQAEEELRRARDDALAGEQAKDRLLTVMSHEMRTPLTGILGSLDVL--E 376

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
             GP  +     Y   +  SG L+L  VND+L +S++E+G       P  LDE VS    
Sbjct: 377 DLGPTAD--QQRYMQAMRVSGELLLHHVNDVLQLSRLEAGADPDPPHPFDLDELVSGIGE 434

Query: 674 LVQLYANEKRILIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
             Q  A      +    +      +    R V+Q+ LN++ NA+ FT  G  + +    T
Sbjct: 435 SQQAIARRNNNELTVFCSLGGSSGVEGRCRYVQQVLLNLIGNALKFTHDGA-VSVDVMRT 493

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
             + V   V DTG G+   +L++    F  +  S +   EGTGLGL +++ +V    G+ 
Sbjct: 494 EGDLVEFSVADTGKGIAAEDLDRIFDDFTMLDPSYKRGSEGTGLGLAISRRLVRLMGGEI 553

Query: 793 YIFSTPAKGTLIEIIFPLYDTS 814
              S P +G+L     PL   +
Sbjct: 554 TCESEPDEGSLFTFTIPLPPVT 575



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/224 (11%), Positives = 56/224 (25%), Gaps = 17/224 (7%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKRQNTWYGKTT 148
           DA G +  I+    +  G    + IG+    +  +       N I D+L+  +     T 
Sbjct: 235 DAAGRITAINGAAEEIFGYSEEEAIGLSFDALVLNSPDNSGPNKIDDILRESDGRIEMTA 294

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                     +P++++     S   +         V             +R         
Sbjct: 295 QRKN---GEILPVEVSLTLSKSNGNQVL----VSYVRDISRRLQAEEELRRARDDALAGE 347

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           + K    +V   +          P   +   +  L +     D         +  S E  
Sbjct: 348 QAKDRLLTVMSHEMR-------TPLTGILGSLDVLEDLGPTADQQRY--MQAMRVSGELL 398

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
           L    D   ++  +           +  +        +   +  
Sbjct: 399 LHHVNDVLQLSRLEAGADPDPPHPFDLDELVSGIGESQQAIARR 442


>gi|323524713|ref|YP_004226866.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1001]
 gi|323381715|gb|ADX53806.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1001]
          Length = 1489

 Score =  305 bits (782), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 123/714 (17%), Positives = 235/714 (32%), Gaps = 53/714 (7%)

Query: 130  NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYS-RNREFS---GFRGFGIVH 185
            +  +      +        +   +        + AA  +     R         G   + 
Sbjct: 376  DPRLAKARHTRAYESYPLVMVGRDD-------EPAARALSDFAARRIVVSSHVAGVDPLA 428

Query: 186  VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS---- 241
              R+  D   +   LD+    +   +           DI  ++     L++   V     
Sbjct: 429  FQRIPKDHVVIAPSLDEALRMVASGEADVVVENVAAVDIVLKRQYAGVLKILGTVGESDA 488

Query: 242  ---SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE 298
               ++    +    ++      +  +E+  + ++                   L      
Sbjct: 489  LDFAVRPDLSPLAGLIDRALLAMPPAEKQRIRQKWVTGNAAGVGTWSVSAVRLLPVLIGI 548

Query: 299  SFEYL-----------SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANP 346
                L             R             N     +   P P       G     N 
Sbjct: 549  GVALLVTLRAYLLLQREVRRRKKTERELALQLNFQETMMQMVPYPLVAKDLQGRYIAVNG 608

Query: 347  SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
            ++           +                  + ++  +L   D   +            
Sbjct: 609  AYEEACGLGREAVLGRTTMEVQTWGEANSRVLDQMRLDLLEGGDMAQVELQFERSPGDVR 668

Query: 407  RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
                               + +   G   +  D R  + +      +L  +  +    + 
Sbjct: 669  HGLFWTSIC-----RGNDGQPVCSLGTMVDITDIRRAEMRARDTERRLFDVTRSLPAVVF 723

Query: 467  IINR--EGIIL--STNRAVSKLFGYPVEDILRKPFTVF--LEQNTPSVMNHYLTEILSLD 520
             + R  +G         A   L          +    F  + +   + +   L     L+
Sbjct: 724  QLRRTADGAYSFPYIGGAPGLLLRQGRRRDACREHADFERICEEDRAFVMAELERSARLE 783

Query: 521  LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-YSLTMHDISEWKQEKNKLSHAKKIAE 579
                +E    G  +E K     ++ ++    S  +S    D S       +L+ A+ +AE
Sbjct: 784  TPVLVEFRL-GPEQEFKWTRAEVVPRREADGSVVWSGYWVDASVEHARAEELARARDVAE 842

Query: 580  KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639
              S  K DF A +SHEIRTP+  ++G  EV++        N    E    I  S   +L 
Sbjct: 843  AASRAKDDFFAMMSHEIRTPMNGVLGLVEVLERTPL----NADQGEMLGMIHESAGALLQ 898

Query: 640  IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RIL 698
            I++DLLD SKIE+G++ +  EP+ L E V  A+ L+   A+EK + +R   A+++   + 
Sbjct: 899  ILDDLLDYSKIEAGRLTIEAEPIDLRELVDNAVGLLAGRAHEKGLKVRVDIASDVAATLR 958

Query: 699  ADLRSVKQIALNILSNAIHFTPSGGQIIISTTH----TSNEEVILRVRDTGVGMTNYELE 754
             D   ++Q+  N+L NAI FTP+G Q+ +S       +  + + + V DTG+G+      
Sbjct: 959  GDSVRLRQVLFNLLGNAIKFTPAG-QVDVSVAVVAQTSELQTIEVIVEDTGIGIAADVQA 1017

Query: 755  KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            K  +PF Q  +S   R  GTGLGL + + +++   G   + S P +GT + +  
Sbjct: 1018 KLFEPFVQAESSTTRRFGGTGLGLTICRKLIELMNGSLALESEPGRGTRMTVRL 1071



 Score = 60.0 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/381 (10%), Positives = 90/381 (23%), Gaps = 22/381 (5%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP---NNHIGDLLKRQNTWYGK 146
           D  G    ++    +  G     ++G    +V      +    +    DLL+  +    +
Sbjct: 598 DLQGRYIAVNGAYEEACGLGREAVLGRTTMEVQTWGEANSRVLDQMRLDLLEGGDMAQVE 657

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRG--FGIVHVNRVDNDPRALGKRLDKKF 204
                  G   +     +       + +     G    I  + R +   R   +RL    
Sbjct: 658 LQFERSPGDVRHGLFWTSIC--RGNDGQPVCSLGTMVDITDIRRAEMRARDTERRLFDVT 715

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
             L  +           Y        P  L    +         H D     E+      
Sbjct: 716 RSLPAVVFQLRRTADGAYSFPYIGGAPGLLL--RQGRRRDACREHADFERICEEDRAFVM 773

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
            E     + +   +   +   +Q F   +       E                      E
Sbjct: 774 AELERSARLETPVLVEFRLGPEQEFKWTRAEVVPRREADGSVVWSGYWVDASVEHARAEE 833

Query: 325 TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
                 +            A   F  +  ++    +    GL  +L+   L+ +      
Sbjct: 834 LARARDVAEAASR------AKDDFFAMMSHEIRTPMNGVLGLVEVLERTPLNADQGEMLG 887

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN- 443
           M++ S    +     L          L +   P +        +        +   ++  
Sbjct: 888 MIHESAGALLQILDDLLDYSKIEAGRLTIEAEPIDLRELVDNAVGLLAGRAHEKGLKVRV 947

Query: 444 ------KRKMEIEVMQLCSIL 458
                    +  + ++L  +L
Sbjct: 948 DIASDVAATLRGDSVRLRQVL 968


>gi|83311645|ref|YP_421909.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82946486|dbj|BAE51350.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 847

 Score =  305 bits (782), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 144/690 (20%), Positives = 265/690 (38%), Gaps = 51/690 (7%)

Query: 151 PIEGTNLYVPIDLAALP---IYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
           P+ G      + ++ +    +      F   RGF  +               L     H 
Sbjct: 162 PLAGGGGRRLVVVSVIDDDFLRITMGRFMD-RGFAFL----ASEPAGDRVLALAGSADHT 216

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
            + +    +V  E + + + +     L   +  S LT   A           PL++ E +
Sbjct: 217 GQARS--MAVWGEVFHLGTGR----VLGAGDGFSGLTFTTALPRSRQGVMSEPLISMERT 270

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
           S        +                   + +    +  +  S +   D G +       
Sbjct: 271 SRTIMGAGLSALFFAALVYLA----WRIRQAALRVAAMTHRISSAESTDLGPDELAHLEI 326

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
           +                +     +        +        LL     S    +   ++ 
Sbjct: 327 EVETLVSEVQRSRQALKDEEEARIHLLTEQAALAAENERLHLLH----SVTEVMGVGVIR 382

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV--------- 438
            +D    A ++ +                    ++       +     E +         
Sbjct: 383 MTDGGPQAENSVMRDFAAVAGGLGPFLQARTSGSDLVRIAQGEGERVFETMLARSVDTGL 442

Query: 439 ---DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
              +   ++R+ E  +           + +  + R G++   N+A S+L  +   D+   
Sbjct: 443 ILVEDATSRRQAEEAIAIFAQFPSQDPNPVLRVTRAGVVTHANQAASRLLEFWGIDLGGM 502

Query: 496 PFTVF-----------LEQNTPSVMNHYLTEIL-----SLDLRQTLEKITLGSTKEEKLL 539
               +           ++      +   +  ++      + +         G    E+LL
Sbjct: 503 LPEAWKTHIVDALEGGVQSEAEITVRDRILSLVFVPLPGVGVVNVYGSDITGRIAAERLL 562

Query: 540 SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
            +     +            +I+E  + + +L  AK+ A+  +  K++FLA VSHE+RTP
Sbjct: 563 HMVNESLERRVHQRTEALKAEIAEHIRAERELVAAKEQADLANRAKTEFLANVSHELRTP 622

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L A+IGFSEV+  + FGPLG+ RY+ Y N I  SG  +L ++ND+LDI+KIE+G+M    
Sbjct: 623 LNAVIGFSEVMAAEMFGPLGSARYVGYVNDILASGRHLLAVINDILDIAKIEAGQMEFDM 682

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719
           E V   E V+ AI +V+  A+   +++ +  A ++P + AD R + QI +N+LSN++ FT
Sbjct: 683 ELVQPAEVVAAAIRIVESRADAGGLVLGSHIAEDVPALKADRRRLLQILVNLLSNSVKFT 742

Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
           P GG + ++      + V   V DTG+GM++ E+  AM PF Q+  S   R +GTGLGLP
Sbjct: 743 PEGGSVEVTVEVL-GDMVGFTVSDTGIGMSDDEVVVAMLPFRQVDGSLSRRYDGTGLGLP 801

Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           L +A V+ + G   I S   +GT + +  P
Sbjct: 802 LVRAFVELHGGHLDIVSRKGEGTQVTVRLP 831


>gi|332755266|gb|EGJ85630.1| sensor kinase protein rcsC [Shigella flexneri K-671]
          Length = 880

 Score =  305 bits (782), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 98/427 (22%), Positives = 172/427 (40%), Gaps = 35/427 (8%)

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
           +     L  I+      L +  I                 E        +      E  Q
Sbjct: 234 VPVDKVLERIRM-----LILNAILLNVLAGAALFTLARMYERRIFIPAESDALRLEEHEQ 288

Query: 454 L-CSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
               I+ +   GI I+   +G+ + +N            +  ++                
Sbjct: 289 FNRKIVASAPVGICILRTADGVNILSNELAHTYLNMLTHEDRQR---------------- 332

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571
            LT+I+       ++      T     L +  +  +    +     + D+S   + +  L
Sbjct: 333 -LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSSRVKMEESL 387

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
               + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R       ++
Sbjct: 388 QEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR---LVTAMN 443

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
            S +L+L I++D+LD SKIES ++ +     S  E ++   +        K++ +     
Sbjct: 444 NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFIE 503

Query: 692 NNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
            ++P  +  D   ++Q+  N+LSNAI FT +G  I++       + + +RVRDTGVG+  
Sbjct: 504 PDVPVALNGDPMRLQQVISNLLSNAIKFTDTG-CIVLHVR-ADGDYLSIRVRDTGVGIPA 561

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+   +  PL
Sbjct: 562 KEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIPL 621

Query: 811 YDTSHPH 817
           Y   +P 
Sbjct: 622 YGAQYPQ 628


>gi|161984916|ref|YP_408495.2| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Shigella boydii Sb227]
 gi|320185893|gb|EFW60643.1| Two-component sensor protein RcsC [Shigella flexneri CDC 796-83]
 gi|332093693|gb|EGI98751.1| sensor kinase protein rcsC [Shigella boydii 3594-74]
          Length = 949

 Score =  305 bits (782), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 100/495 (20%), Positives = 186/495 (37%), Gaps = 41/495 (8%)

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
             P+   +             + LT  +S    E                    + ++L 
Sbjct: 239 TLPMGVTILDENGHT-----LISLTGPESKIKGEPRWMQERSWFGY----TEGFRELVLK 289

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV---DTRINK 444
           ++      +      +    E    +              +       E         + 
Sbjct: 290 KNLPPSSLSIVYSVPVDKVLERIRMLILNAILLNVLAGAALFTLARMYERRIFIPAESDA 349

Query: 445 RKMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            ++E        I+ +   GI I+   +G+ + +N            +  ++        
Sbjct: 350 LRLEEHEQFNRKIVASAPVGICILRTADGVNILSNELAHTYLNMLTHEDRQR-------- 401

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                    LT+I+       ++      T     L +  +  +    +     + D+S 
Sbjct: 402 ---------LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSS 448

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + +  L    + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R 
Sbjct: 449 RVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR- 506

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
                 ++ S +L+L I++D+LD SKIES ++ +     S  E ++   +        K+
Sbjct: 507 --LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQ 564

Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           + +      ++P  +  D   ++Q+  N+LSNAI FT +G  I++       + + +RVR
Sbjct: 565 LGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG-CIVLHVR-ADGDYLSIRVR 622

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTGVG+   E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+
Sbjct: 623 DTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGS 682

Query: 803 LIEIIFPLYDTSHPH 817
              +  PLY   +P 
Sbjct: 683 QFTVRIPLYGAQYPQ 697


>gi|331673737|ref|ZP_08374500.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
           C) [Escherichia coli TA280]
 gi|331069010|gb|EGI40402.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
           C) [Escherichia coli TA280]
          Length = 949

 Score =  305 bits (782), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 100/495 (20%), Positives = 187/495 (37%), Gaps = 41/495 (8%)

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
             P+   +             + LT  +S    +                    + ++L 
Sbjct: 239 TLPMGVTILDENGHT-----LISLTGPESKIKGDPRWMQERSWFGY----TEGFRELVLK 289

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV---DTRINK 444
           ++      +      +    E    +              +       E         + 
Sbjct: 290 KNLPPSSLSIVYSVPVDKVLERIRMLILNAILLNVLAGAALFTLARMYERRIFIPAESDA 349

Query: 445 RKMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            ++E        I+ +   GI I+   +G+ + +N            +  ++        
Sbjct: 350 LRLEEHEQFNRKIVASAPVGICILRTADGVNILSNELAHTYLNMLTHEDRQR-------- 401

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                    LT+I+       ++      T     L +  +  +    +     + D+S 
Sbjct: 402 ---------LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSS 448

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + +  L    + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R 
Sbjct: 449 RVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR- 506

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
                 ++ S +L+L I++D+LD SKIES ++ +     S  E ++   +        K+
Sbjct: 507 --LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQ 564

Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           + +      ++P  +  D   ++Q+  N+LSNAI FT +G  I++    T  + + +RVR
Sbjct: 565 LGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG-CIVLHVR-TDGDYLSIRVR 622

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTGVG+   E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+
Sbjct: 623 DTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGS 682

Query: 803 LIEIIFPLYDTSHPH 817
              +  PLY   +P 
Sbjct: 683 QFTVRIPLYGAQYPQ 697


>gi|301384041|ref|ZP_07232459.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. tomato Max13]
          Length = 1195

 Score =  305 bits (782), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 94/472 (19%), Positives = 180/472 (38%), Gaps = 14/472 (2%)

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411
                   I+    L  +L+        A    +  +   + +          W R    
Sbjct: 468 WSPDRFSVIKTQPELLGILNKALEEFPVAELRSIRLKWLGSSLP-----QPSLWGRIPPW 522

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471
               +              + ++ +       + ++  ++    ++L+   + I + + +
Sbjct: 523 VFWVVALALLTGLVSLAWSSRLKVQIRQRLKAECQLNDQLAFKHALLDGIPNPIYVRDLK 582

Query: 472 GIILSTNRAVSKLFGYPVEDILRKPF--TVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
           G ++S NR+  +  G   E +  +       + +     M+     +L        ++  
Sbjct: 583 GRLISCNRSYEQSLGVSFEQMNGRRLLDVEVIPRPLAEQMHADYLALLENHQPVFSDRTI 642

Query: 530 LGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
             S K   +    +                 DI+E K  + +L  A ++A + +  KS F
Sbjct: 643 ELSGKRMNVWQWTVPFFAADGQLQGLLGGWIDITERKLLEQQLEQAVRLAAQANEAKSVF 702

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
           LA +SHEIRTP+ AIIG  E+   Q       P          RS   ++ ++ + LD++
Sbjct: 703 LASMSHEIRTPMGAIIGLLELECEQALRRGEAPTQG--LQVAHRSATELVALIGESLDLA 760

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQI 707
           +IE+G M L      L       ++L    A EK + +R   A         D   ++Q+
Sbjct: 761 RIEAGGMQLSLVVTPLQTFFEGVLALFSAQAREKGLELRLELAEQARGDYWLDPLRLRQV 820

Query: 708 ALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764
             N+L NA+ FT  G    ++ +S        V + + D+GVG+     ++  +PF Q  
Sbjct: 821 VHNVLGNALKFTRQGAVVVKVEVSDDPPDASRVRIGIMDSGVGIEPARQQQIFQPFTQAA 880

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           +    R  G+GLGL + + +V+   G   + S P KGT + +  PL   + P
Sbjct: 881 DDTAARYGGSGLGLSITRQLVELMKGDISLHSEPGKGTRVTVDVPLARVTEP 932


>gi|187731557|ref|YP_001879435.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Shigella boydii CDC 3083-94]
 gi|187428549|gb|ACD07823.1| sensor histidine kinase/response regulator RcsC [Shigella boydii
           CDC 3083-94]
          Length = 949

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 100/495 (20%), Positives = 187/495 (37%), Gaps = 41/495 (8%)

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
             P+   +             + LT  +S    +                    + ++L 
Sbjct: 239 TLPMGVTILDENGHT-----LISLTGPESKIKGDPRWMQERSWFGY----TEGFRELVLK 289

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV---DTRINK 444
           ++      +      +   RE    +              +       E         + 
Sbjct: 290 KNLPPSSLSIVYSVPVDKVRERIRMLILNAILLNVLAGAALFTLARMYERRIFIPAESDA 349

Query: 445 RKMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            ++E        I+ +   GI I+   +G+ + +N            +  ++        
Sbjct: 350 LRLEEHEQFNRKIVASAPVGICILRTADGVNILSNELAHTYLNMLTHEDRQR-------- 401

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                    LT+I+       ++      T     L +  +  +    +     + D+S 
Sbjct: 402 ---------LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSS 448

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + +  L    + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R 
Sbjct: 449 RVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR- 506

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
                 ++ S +L+L I++D+LD SKIES ++ +     S  E ++   +        K+
Sbjct: 507 --LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQ 564

Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           + +      ++P  +  D   ++Q+  N+LSNAI FT +G  I++       + + +RVR
Sbjct: 565 LGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG-CIVLHVR-ADGDYLSIRVR 622

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTGVG+   E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+
Sbjct: 623 DTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGS 682

Query: 803 LIEIIFPLYDTSHPH 817
              +  PLY   +P 
Sbjct: 683 QFTVRIPLYGAQYPQ 697


>gi|81325113|sp|Q9RDT3|WALK_STAAU RecName: Full=Sensor protein kinase walK
 gi|6689207|emb|CAB65401.1| VicK protein [Staphylococcus aureus]
          Length = 415

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 78/370 (21%), Positives = 163/370 (44%), Gaps = 25/370 (6%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +  +   E E  +L S++   SDGI   +R G I   N    K+ G   EDI+       
Sbjct: 59  QEAQANTESEKRRLDSVITHMSDGIIATDRRGRIRIVNDMALKMLGMAKEDIIGYYMLSV 118

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
           L       +        S  L    E+  +        ++   I+++  F + Y   +HD
Sbjct: 119 LSLEDEFKLEEIQENNDSFLLDLNEEEGLIAR------VNFSTIVQETGFVTGYIAVLHD 172

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           ++E +Q + +              + +F+A VSHE+RTPLT++  + E ++   +     
Sbjct: 173 VTEQQQVERE--------------RREFVANVSHELRTPLTSMNSYIEALEEGAW--KDE 216

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
               ++ +        ++ +VNDLL +SK+++    ++ E +  +  +++ I+  ++ A 
Sbjct: 217 ELAPQFLSVTREETERMIRLVNDLLQLSKMDNESDQINKEIIDFNMFINKIINRHEMSA- 275

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN-EEVIL 739
            K                 D   + Q+  N+++NA+ ++    ++            + +
Sbjct: 276 -KDTTFIRDIPKKTIFTEFDPDKMTQVFDNVITNAMKYSRGDKRVEFHVKQNPLYNRMTI 334

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
           R++D G+G+   +++K    F ++  ++  +  GTGLGL ++K +V+A+ G+ +  S   
Sbjct: 335 RIKDNGIGIPINKVDKIFDRFYRVDKARTRKMGGTGLGLAISKEIVEAHNGRIWANSVEG 394

Query: 800 KGTLIEIIFP 809
           +GT I I  P
Sbjct: 395 QGTSIFITLP 404


>gi|304396312|ref|ZP_07378193.1| multi-sensor hybrid histidine kinase [Pantoea sp. aB]
 gi|304355821|gb|EFM20187.1| multi-sensor hybrid histidine kinase [Pantoea sp. aB]
          Length = 777

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 89/436 (20%), Positives = 183/436 (41%), Gaps = 17/436 (3%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L             L+         L       +KA    E +  + +  E
Sbjct: 81  EESRQRLARLVDKLEEMRTRDLELNQQMKETITQLNQEISDRKKAELAREQV-MDKLREE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
                  + ++E +   L S L+A+ D +   N +      NRA+  L G   + ++   
Sbjct: 140 VTRREQAQIELEQQSSFLRSFLDASPDLVFYRNIDKQFSGCNRAMELLTGKSEKQLIGLT 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCY 554
                +    + +     ++   ++  T E+        +    +R +    ++   S  
Sbjct: 200 PRDIYDDEAATKVLETDEKVFRHNVSLTYEQWLQYPDGRKACFEIRKVPYYDRVGKRSGL 259

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E K+ ++ L +        S  K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 260 MGFGRDITERKRYQDALEN-------ASREKTTFISTISHELRTPLNGIVGLSRILLDTD 312

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                N   ++Y   I  S   + +I ND++++ KIE  K+ L  +P+     +++  +L
Sbjct: 313 L----NQEQLKYLKTIHVSAITLGNIFNDVIEVDKIERRKVQLDNQPLDFTGFLADLENL 368

Query: 675 VQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
             L A  K +    +    +P  I  D   ++QI  N++ NA+ FT  G +I++  T+  
Sbjct: 369 SGLLAQPKGLKFVLAPQLPLPHMISTDGTRLRQILWNLIGNAVKFTQQG-EIVVRVTYEQ 427

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMGKF 792
           +E +   V+D+G+G+   E +K    + Q+ +    +   GTG+GL +++ +  A  G  
Sbjct: 428 DETLRFEVQDSGMGIRQDEQDKIFAMYYQVKDQHGGKPATGTGIGLAVSRRLAQAMGGDI 487

Query: 793 YIFSTPAKGTLIEIIF 808
            + S P +G+   +  
Sbjct: 488 RVHSAPGQGSCFTVEI 503



 Score = 48.1 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/246 (9%), Positives = 62/246 (25%), Gaps = 21/246 (8%)

Query: 222 YDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL----TSEESSLPEQEDFHT 277
             + +  +      + +++    +  A   D L+  +   L      +E+     ++   
Sbjct: 62  GLLITPWAVYFLSVVVDQLEESRQRLARLVDKLEEMRTRDLELNQQMKETITQLNQEISD 121

Query: 278 INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS 337
               +  ++Q    L+                      ++  +     +D  P   F  +
Sbjct: 122 RKKAELAREQVMDKLREEV---------TRREQAQIELEQQSSFLRSFLDASPDLVFYRN 172

Query: 338 HG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA 396
                   N +  LLT       I        L       D  A K +           +
Sbjct: 173 IDKQFSGCNRAMELLTGKSEKQLIG-------LTPRDIYDDEAATKVLETDEKVFRHNVS 225

Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
                 +Q+                ++  +     G   +  + +  +  +E    +  +
Sbjct: 226 LTYEQWLQYPDGRKACFEIRKVPYYDRVGKRSGLMGFGRDITERKRYQDALENASREKTT 285

Query: 457 ILEATS 462
            +   S
Sbjct: 286 FISTIS 291



 Score = 40.0 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 24/154 (15%), Positives = 49/154 (31%), Gaps = 9/154 (5%)

Query: 67  YLDSENTF--VFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI 124
            L+ +++F   F      + F  NID        +  +    G    ++IG+   D+ D 
Sbjct: 149 ELEQQSSFLRSFLDASPDLVFYRNIDKQ--FSGCNRAMELLTGKSEKQLIGLTPRDIYDD 206

Query: 125 LHIDPNNHIGDLLKRQN-TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI 183
                     + + R N +   +  L   +G       ++  +P Y R  + SG  GFG 
Sbjct: 207 EAATKVLETDEKVFRHNVSLTYEQWLQYPDGRKACF--EIRKVPYYDRVGKRSGLMGFG- 263

Query: 184 VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSV 217
                     +   +   ++ +            
Sbjct: 264 -RDITERKRYQDALENASREKTTFISTISHELRT 296


>gi|303327105|ref|ZP_07357547.1| sensory box histidine kinase/response regulator [Desulfovibrio sp.
           3_1_syn3]
 gi|302863093|gb|EFL86025.1| sensory box histidine kinase/response regulator [Desulfovibrio sp.
           3_1_syn3]
          Length = 696

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 94/370 (25%), Positives = 171/370 (46%), Gaps = 15/370 (4%)

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILRKPFTVF 500
             +  +  +  QL  IL+A  + + I + +   +L TN+A+++ F         +     
Sbjct: 178 RQRAGLARKSRQLADILDAFVEPVYISDMDTYEVLFTNKALNEQFPLRPGRD--QRCFAR 235

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY-SLTMH 559
            +             +   D   +       +       ++   + +             
Sbjct: 236 FQGLDAPCPFCTNAFLRGRDNPDSPHHWVHVNPLSNHTYTIVDRLIRWEDGRRVRLSIAM 295

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           D+++  + + +    K++AE  +  KS+FLAR+SHEIRTP+  I+G + +  +    P  
Sbjct: 296 DVTDVLEAQRE----KELAEAATRAKSEFLARMSHEIRTPMNGILGMTYLALDDNPAP-- 349

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
             R  EY   I  S   +L I+ND+LD SKIE+GK+++  E  +LDE V    +++    
Sbjct: 350 --RQREYLRKIRLSAKSLLGIINDILDFSKIEAGKLDISEEDFALDELVQNLRAMLSAQV 407

Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNE-E 736
           +EK++    + A ++P  +  D   + ++ +N+L NA+ FT  GG  + + T        
Sbjct: 408 HEKQLSFSVNLARDVPLWLRGDALRITEVLINLLGNALKFTSQGGISLDVGTDCRDGAVF 467

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           +   VRDTG+G++  ELE   +PF Q  +S   R  GTGLGL +++ +     GK +  S
Sbjct: 468 LHFMVRDTGIGISAGELENLFQPFTQADSSISRRFGGTGLGLAISRQLARLMDGKLWCES 527

Query: 797 TPAKGTLIEI 806
            P KG++   
Sbjct: 528 EPGKGSVFHF 537


>gi|283853554|ref|ZP_06370793.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           sp. FW1012B]
 gi|283571053|gb|EFC19074.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           sp. FW1012B]
          Length = 545

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 99/557 (17%), Positives = 191/557 (34%), Gaps = 82/557 (14%)

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
           +    +        +D  P  FF     G   YAN +F  L        +   G     L
Sbjct: 4   TPPLWDDPAFAGAMMDASPDLFFFKDASGVYRYANTAFCRLFGLSREAVV---GHTDADL 60

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
             P+ ++ +  +      +     +    +         ++ +  +    A+   +    
Sbjct: 61  FPPENAERH-TRADRSVLAGGRSDSFEYEVAR----NGRTVWLQVLKTPVADASGQAAGL 115

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLC----------------------------------- 455
                     +  + +  +   +L                                    
Sbjct: 116 FCTARNITGHKQREAQARLTRNELEKDVSEQAEDLRQANQELRRQIEERHKAEQALEQSL 175

Query: 456 ----SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
                ILE +  GIA ++   ++   N    +LF  P   IL      F           
Sbjct: 176 RTVNLILENSPIGIAFVSER-VVQRANPRFHELFARPGGSILGLSTAAFYP--DREAFEA 232

Query: 512 YLTEILS-LDLRQTLEKITLGSTKEEKLLSLRII---IKKLPFSSCYSLTMHDISEWKQE 567
           +  E    L   + ++ + +    +      RII   +      +     M D+++ +  
Sbjct: 233 FGREFYPILGRGERVDTVRVMRRADGTDFWCRIIGQVLFPDRPQAGSIWLMEDVTDRRLA 292

Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
           +                K +F+  +SHEIRTPL  I+G +E+++         P      
Sbjct: 293 EE-------ATLAAERLKREFMDNMSHEIRTPLNGILGMAELLQ----AAALPPEQRGQV 341

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
             +  + ++++D++  +LD S+++SG       P SL+  +  A++     A +K + +R
Sbjct: 342 ETLQEAAHILMDLLESILDFSRLDSGDTETRRTPFSLNNIIQGAVNSFGSAALKKGLSLR 401

Query: 688 TSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV--------- 737
              +   P  ++ D   ++Q+   ++SNAI FT  G  + +        EV         
Sbjct: 402 WQISPQAPDTVVGDGGGLRQVLAALISNAIKFTNEG-MVEVVVGLGPLGEVSAGRTGEGD 460

Query: 738 -----ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
                 + V DTG+G+   +LE   +PF Q   S   R  G GLGL +A+ +  A  G  
Sbjct: 461 SPVLLTVAVGDTGIGLAPDQLETIFEPFRQADGSMTRRFGGAGLGLAIARKLAAAMGGTL 520

Query: 793 YIFSTPAKGTLIEIIFP 809
            + S P KG++     P
Sbjct: 521 EVRSEPGKGSVFCFTAP 537



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 41/394 (10%), Positives = 91/394 (23%), Gaps = 61/394 (15%)

Query: 79  IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLL 137
                 F +  DA G  +  +    +  G     ++G    D+    + + +      +L
Sbjct: 19  DASPDLFFFK-DASGVYRYANTAFCRLFGLSREAVVGHTDADLFPPENAERHTRADRSVL 77

Query: 138 KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG 197
               +   +   + +      V + +   P+   + + +G   F             A  
Sbjct: 78  AGGRSDSFE---YEVARNGRTVWLQVLKTPVADASGQAAGL--FCTARNITGHKQREAQA 132

Query: 198 KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257
           +                                                    +  +  +
Sbjct: 133 R----------------------------------------------LTRNELEKDVSEQ 146

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
              L  + +    + E+ H          +    +  NS     ++S R     +  F E
Sbjct: 147 AEDLRQANQELRRQIEERHKAEQALEQSLRTVNLILENSPIGIAFVSERVVQRANPRFHE 206

Query: 318 GENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTK----YKSVDDIEIAGGLS---TLL 370
                  ++       F             F  +        +V  +  A G      ++
Sbjct: 207 LFARPGGSILGLSTAAFYPDREAFEAFGREFYPILGRGERVDTVRVMRRADGTDFWCRII 266

Query: 371 DAPKLSDNNAIKPVMLYR-SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
                 D      + L        +A  A L   +  RE    M+       N       
Sbjct: 267 GQVLFPDRPQAGSIWLMEDVTDRRLAEEATLAAERLKREFMDNMSHEIRTPLNGILGMAE 326

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
                    + R     ++     L  +LE+  D
Sbjct: 327 LLQAAALPPEQRGQVETLQEAAHILMDLLESILD 360


>gi|146280448|ref|YP_001170601.1| two-component sensor [Pseudomonas stutzeri A1501]
 gi|145568653|gb|ABP77759.1| two-component sensor [Pseudomonas stutzeri A1501]
          Length = 968

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 95/587 (16%), Positives = 203/587 (34%), Gaps = 29/587 (4%)

Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302
           L    A +  V          +   +  E+      NL     +     ++   +   + 
Sbjct: 123 LDATIAERLQVAAGNVQARRDAGLQAAAERLRGAGGNLLMDRLRALLNAVEQQERRELKA 182

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIE 361
            S     +           +   V    I F+ V+ +  +           + +    ++
Sbjct: 183 ASSAVAQTTERAQRLALIGSLVVVALLLIAFWAVHRNLRIRQQLAGAAQAGEARLGALLQ 242

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                   +D  +   + A                   L     +             + 
Sbjct: 243 AIPDYLYAVDHRQQISSLAAGTARRTPQPAAIEPLLHDLLQQHEDSGLRQNTWCEVQTRR 302

Query: 422 NQFPENMPQ-----NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476
                 MP        I  +  + + ++  +  + + L  +++   + I + + +G  L 
Sbjct: 303 TFEVRLMPTGLGDHLAIARDISELQRSRDSLHDQQLFLRRVVDTDDNLIFVRDAQGRFLL 362

Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN--HYLTEILSLDLRQTLEKITLGSTK 534
            N A+S L     +DI ++             +         L+    +        +  
Sbjct: 363 CNTALSALLDVRPQDIEQRHPDEVASARLLRPLLLGDDELAALASGSGELRTTEVALTDA 422

Query: 535 EEKLLSLRIIIKKLPFSSC---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
                  +++ + L  S+          D+S  ++ +                K++F++ 
Sbjct: 423 HGTEHWFQVVKRPLRISARTCHVVTVAVDVSLRRRME--------------QMKTEFIST 468

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           VSHE+RTPLTAI G   ++     G L +           ++   ++ ++ND+LDI K+E
Sbjct: 469 VSHELRTPLTAIRGALGMLIGGIAGQLSDE-ARPLLTIAHKNSERLVRLINDILDIEKLE 527

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP--RILADLRSVKQIAL 709
           +G++  +     +   V +A+S +  Y  +  + +    A  +       D     Q+  
Sbjct: 528 AGRLAFNLGRHDVRPLVQQALSDITPYGQDYGVTLEFLDAPELASSEATLDPDRFAQVMA 587

Query: 710 NILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
           N+LSNAI  +P+GG++ +    +  E + + V+D G G+      +  + F Q  +S   
Sbjct: 588 NLLSNAIKHSPAGGRVTVDLRRS-GERLEIGVQDRGPGIPEAFRSRIFERFAQADSSDAR 646

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           +  GTGLGL + +++V    GK      P +GT   +  PL + + P
Sbjct: 647 QRGGTGLGLAITRSLVQQMNGKIGFDCQPDQGTRFWLQLPLEEHAQP 693



 Score = 41.9 bits (97), Expect = 0.48,   Method: Composition-based stats.
 Identities = 23/242 (9%), Positives = 52/242 (21%), Gaps = 22/242 (9%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP----NNHIGDLLKRQNTWYG 145
           DA G     +  L   +      +      +V+    + P    ++ +  L         
Sbjct: 355 DAQGRFLLCNTALSALLDVRPQDIEQRHPDEVASARLLRPLLLGDDELAALASGSGELRT 414

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
                  +         +   P+    R           HV  V  D             
Sbjct: 415 TEVAL-TDAHGTEHWFQVVKRPLRISAR---------TCHVVTVAVD--------VSLRR 456

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
            + ++K    S    +              +   ++      A     +  +    L   
Sbjct: 457 RMEQMKTEFISTVSHELRTPLTAIRGALGMLIGGIAGQLSDEARPLLTIAHKNSERLVRL 516

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
            + + + E      L     +     L   +             +L          +  T
Sbjct: 517 INDILDIEKLEAGRLAFNLGRHDVRPLVQQALSDITPYGQDYGVTLEFLDAPELASSEAT 576

Query: 326 VD 327
           +D
Sbjct: 577 LD 578


>gi|332754864|gb|EGJ85229.1| sensor kinase protein rcsC [Shigella flexneri 4343-70]
 gi|333001721|gb|EGK21287.1| sensor kinase protein rcsC [Shigella flexneri K-218]
          Length = 949

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 98/427 (22%), Positives = 172/427 (40%), Gaps = 35/427 (8%)

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
           +     L  I+      L +  I                 E        +      E  Q
Sbjct: 303 VPVDKVLERIRM-----LILNAILLNVLAGAALFTLARMYERRIFIPAESDALRLEEHEQ 357

Query: 454 L-CSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
               I+ +   GI I+   +G+ + +N            +  ++                
Sbjct: 358 FNRKIVASAPVGICILRTADGVNILSNELAHTYLNMLTHEDRQR---------------- 401

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571
            LT+I+       ++      T     L +  +  +    +     + D+S   + +  L
Sbjct: 402 -LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSSRVKMEESL 456

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
               + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R       ++
Sbjct: 457 QEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR---LVTVMN 512

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
            S +L+L I++D+LD SKIES ++ +     S  E ++   +        K++ +     
Sbjct: 513 NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFIE 572

Query: 692 NNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
            ++P  +  D   ++Q+  N+LSNAI FT +G  I++       + + +RVRDTGVG+  
Sbjct: 573 PDVPVALNGDPMRLQQVISNLLSNAIKFTDTG-CIVLHVR-ADGDYLSIRVRDTGVGIPA 630

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+   +  PL
Sbjct: 631 KEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIPL 690

Query: 811 YDTSHPH 817
           Y   +P 
Sbjct: 691 YGAQYPQ 697


>gi|218130832|ref|ZP_03459636.1| hypothetical protein BACEGG_02427 [Bacteroides eggerthii DSM 20697]
 gi|217987176|gb|EEC53507.1| hypothetical protein BACEGG_02427 [Bacteroides eggerthii DSM 20697]
          Length = 912

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 98/484 (20%), Positives = 182/484 (37%), Gaps = 28/484 (5%)

Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
           F  +  G L +AN  F         DDI                       +       +
Sbjct: 275 FAAHEDGTLIFANRFFRQHHNIGLTDDITQLKIYQ---VNSHARSEEEWNRIKASIPKGS 331

Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
                     +  + E         +  +++   ++   G   +      ++++++    
Sbjct: 332 QRKGFIFYDPLPLHPEVLAMEGNAFWVTSDEGEYSLWAFG--KDITQRIKDEQQIKRFSQ 389

Query: 453 QLCSILEATSDGIAIINREGII--LSTNR-AVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
            +   +E    GI + + +     L  NR + ++    P+++ L K    F   +     
Sbjct: 390 VMDKTIENLPAGIVVKDIKNNFKYLYRNRESYNR--NIPMKEALGKDDFDFYPFDIAQKK 447

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF---SSCYSLTMHDISEWKQ 566
                EI    + +          +  K + L     ++     S        DI+E ++
Sbjct: 448 RKQDMEIAETGIEKHWITEEY--DQNGKSIILDKRKMRIESKDFSPILLSIEWDITEMER 505

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
            K +L  AK+ AE     KS FLA +SHEIRTPL AI+GFS +I               +
Sbjct: 506 MKQELLVAKEKAEASDQLKSAFLANMSHEIRTPLNAIVGFSRIIAE----STDAEERKSF 561

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
            + ++ +   +L ++N++LD+SKIE+G +     PV L     E    ++    +  + +
Sbjct: 562 YDIVEANNERLLQLINEILDLSKIEAGIVEFTITPVRLHSLCREIYDALKFRCPQ-GVKL 620

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-VILRVRDTG 745
               ++    I  D   + Q+  N++ NA  FT  G    +S  +    + +   V DTG
Sbjct: 621 IYEPSDEEITIEGDKNRIFQVISNLIGNAFKFTTQG---KVSYGYRRKGDGIEFHVSDTG 677

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+   +L+K  + F +         +GTGLGL + K +++   G     S   KGT   
Sbjct: 678 IGIEAGKLDKVFERFVK----MNSFAQGTGLGLSICKTIIERLGGTISASSEMGKGTTFT 733

Query: 806 IIFP 809
              P
Sbjct: 734 FTLP 737



 Score = 45.0 bits (105), Expect = 0.051,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 42/132 (31%), Gaps = 15/132 (11%)

Query: 457 ILEATSDGIAIINREGI-----ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
           +L  TSD + +++R G+     +   N     L+    + +L K     L  +T   +  
Sbjct: 26  LLNLTSDTMILLDRNGVCVDIAVHDIN-----LWFLTEDQLLDKNILQLLPPSTYRKIYP 80

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571
              ++L      +        +K     +        P+         DI+E  Q K +L
Sbjct: 81  EFKKVLLRGEVSSRNYELATDSK-----TYFFKCIMRPYEDMVLCQYRDITERSQRKLEL 135

Query: 572 SHAKKIAEKESS 583
                   +   
Sbjct: 136 EKKNYELNEIQK 147


>gi|66812156|ref|XP_640257.1| histidine kinase [Dictyostelium discoideum AX4]
 gi|74855086|sp|Q54SP4|DHKD_DICDI RecName: Full=Hybrid signal transduction histidine kinase D
 gi|60468257|gb|EAL66266.1| histidine kinase [Dictyostelium discoideum AX4]
          Length = 1546

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 90/407 (22%), Positives = 158/407 (38%), Gaps = 31/407 (7%)

Query: 439 DTRINKRKMEIEVMQLCSI----------LEATSDGIAIINREGIILSTNRAVSKLFGYP 488
           D    + ++  E+  L ++          L+     +A+++  G +L  N    +  G  
Sbjct: 42  DHEKTREELIEEINHLRAVSNSNKNARIMLDEMYQFVALLDVNGNLLDVNEPALQGGGMI 101

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEI---LSLDLRQTLEKITLGSTKEEKLLSLRIII 545
              I   PF       T       + E     S       E    G +   + +++   +
Sbjct: 102 RSSIQGIPFWDCRWWATSQENIDNVREAVHKASKGEFIRYETEIFGKSAGTEKITIDFSL 161

Query: 546 KKLPFSSCYSLTM----HDISEWKQEKNKLSHAKKIAE-------KESSHKSDFLARVSH 594
             L         +     +I+E +  + ++               +    K+ F A VSH
Sbjct: 162 MPLFNDKGEVSLILPEGRNITEKRLGELEIERKNNELRSLYEKIKELDELKTQFFANVSH 221

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           E+RTPL  I+G ++ +       +      +    + R+   +L IVN+LLDIS++E+GK
Sbjct: 222 ELRTPLALIVGPTDKLLKDENVDIN---VRKDLEIVARNARGLLKIVNNLLDISRLEAGK 278

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714
           MNL++  V+L + V    S  ++ A EK +       +       D   ++++  N++SN
Sbjct: 279 MNLNYSMVNLGQTVHLIASCFEILAREKSLDFSIITPSEPMMAAIDADKMQRVITNLISN 338

Query: 715 AIHFTPSGGQIIISTTHTS----NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           A  FTPSGG +                 + V DTG G+ +   E   + F Q+  S   +
Sbjct: 339 AFKFTPSGGAVKCILEKFDLSPNKPGFQIVVSDTGPGIPDNLHEIIFERFRQVDGSSTRK 398

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
             GTGLGL + K  V  + G   I +    G    +  PL      H
Sbjct: 399 HGGTGLGLSIVKEFVTLHGGTVTIHNISTGGAQFTLRLPLTPNMDEH 445



 Score =  236 bits (601), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 60/283 (21%), Positives = 111/283 (39%), Gaps = 42/283 (14%)

Query: 570  KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK-----------NQRFGPL 618
            +L   + +    +  K +F   +SHE+RTPL  I+G+ +++                   
Sbjct: 726  ELEKERNLLNNTNKSKDEFFMNLSHELRTPLNGILGWCQLLLYDIDSGGSSGGGSGSISG 785

Query: 619  GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
             +         I+R  +    ++NDLLD+S I   K +L    V L   +  AIS + + 
Sbjct: 786  DDSTVRTGLETIERCASSQNQLINDLLDMSLIIGDKFSLILGDVDLPILIENAISSILVT 845

Query: 679  ANEKRILIRTSFANN-------IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT- 730
            A  K+I + ++           +  I+ D   ++Q+  N+LSN+I FT   G+I ++   
Sbjct: 846  AQSKKISVHSNIQGEGEEESSILRNIVGDKARLQQVIWNLLSNSIKFTKEKGRIHLNLKV 905

Query: 731  ----------------------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
                                     +  ++  + D G G+    L      F Q   S  
Sbjct: 906  VNQIPSREVLGFCSNPMFNTINRHGDRWILFTITDNGKGIPKQFLPSVFDRFKQADCSST 965

Query: 769  IRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFPL 810
                G G+GL + + ++  + G  Y  S    KG+   ++ P+
Sbjct: 966  RSYGGLGIGLSITQNIIHLHKGAVYANSEGENKGSQFTVVLPI 1008


>gi|159900753|ref|YP_001547000.1| multi-sensor hybrid histidine kinase [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159893792|gb|ABX06872.1| multi-sensor hybrid histidine kinase [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 1064

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 89/447 (19%), Positives = 175/447 (39%), Gaps = 58/447 (12%)

Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM----EIEVMQLCSILEAT 461
           +    L        +     +         + +   +   ++    + +  +L +  ++ 
Sbjct: 381 DEAVGLISAASDSPERLFDHDQTLFVRQVADRLAAWLENIQLFYLLKQQANELQTSFDSL 440

Query: 462 SDGIAIINREGIILSTNRA-----VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
            D +   +  G     N A       + F +   +++ +     +       +   L   
Sbjct: 441 DDIVVSYDSRGHQTRINEAGTQFFAGRHFDFLSNNLVWRTAKGNVLGFDEHPIQQALAGT 500

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLS 572
                    +     S  +   +   + +  L  +        L   D+S  K       
Sbjct: 501 ------TVRDVEVSLSRSDGVPIIHEVSVSPLRSADGSIEGIVLVARDLSARK------- 547

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
                  +    K + +A +SHE+RTPLTAI+G+SE++  +R   L  P +      I  
Sbjct: 548 -------ELDRLKEELVANMSHELRTPLTAILGYSELLLKRRTEVLT-PWHTTKIEGIRT 599

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
            G  +L +VNDLLDI+K+++G++ L  +   ++  + E ++++Q    EK+  +      
Sbjct: 600 GGQRLLSLVNDLLDIAKLDAGRIELQRQTTIINSLLQEQVAILQPMLREKQQTLTLQLGQ 659

Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIII-STTHT------------------- 732
           +IP ++ D   + Q   N+LSNAI FTP  G I + ST                      
Sbjct: 660 HIPLLMIDPERIGQAVTNLLSNAIKFTPEQGTITLASTALNIDEHGQIDWLDQVLATEVP 719

Query: 733 ---SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
              + + V+++V D+GVG+    L K    F Q+      R  GTGLGL + + +V+ + 
Sbjct: 720 PMLAGQYVLIQVSDSGVGVPAEALVKLWDRFYQVEGGSTRRFGGTGLGLSIVQQLVELHG 779

Query: 790 GKFYIFST-PAKGTLIEIIFPLYDTSH 815
           G+ +  S    +G+   I+ P+   + 
Sbjct: 780 GRTWATSAGENQGSSFTIMLPVSRGAQ 806


>gi|225026715|ref|ZP_03715907.1| hypothetical protein EUBHAL_00967 [Eubacterium hallii DSM 3353]
 gi|224955976|gb|EEG37185.1| hypothetical protein EUBHAL_00967 [Eubacterium hallii DSM 3353]
          Length = 983

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 98/365 (26%), Positives = 169/365 (46%), Gaps = 12/365 (3%)

Query: 460 ATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEI 516
              D   +++ +       +    KL G  VE I +          +       +Y+ EI
Sbjct: 343 NVDDVFLMLDAKTYQADYVSPNAEKLLGITVEQIRKDICILGKLHPEEQEDSEKNYMEEI 402

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKK 576
              + R+   +     T E++     ++  ++     Y L M D +   +    LS A  
Sbjct: 403 QVHEQREWDFEYVHLKTGEKRWFHNIVMGSEVNGKRKYILVMSDRTSDWKMNQALSEAVH 462

Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
            AE  +  KS FL+ +SH+IRTP+ AIIGF+ +  +         R  +Y   I  S N 
Sbjct: 463 AAETANQAKSTFLSNMSHDIRTPMNAIIGFTTLAVSNID---NQERVQDYLGKILSSSNH 519

Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF-ANNIP 695
           +L ++ND+LD+S+IESGK++L    VSL + + +  +++    + K++ +          
Sbjct: 520 LLSLINDILDMSRIESGKIHLEETEVSLSDVLHDLKTIISGQIHAKQLELYMDVMDVTNE 579

Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIIST-----THTSNEEVILRVRDTGVGMTN 750
            +  D   + Q+ LN+LSNA+ FTP+GG + +           ++   +RV+DTG+GM+ 
Sbjct: 580 DVYCDKTRLNQVLLNLLSNAVKFTPAGGTVSVRLKQYPKAVKGSKLYEIRVKDTGIGMSQ 639

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             ++K   PF +   S   R +GTGLG+ + K +VD   G   + +   KGT   +  PL
Sbjct: 640 EFVQKIFSPFERERTSTVSRTQGTGLGMAITKNIVDMMGGTIEVQTEQGKGTEFIVCLPL 699

Query: 811 YDTSH 815
              S 
Sbjct: 700 RIQSE 704


>gi|228938688|ref|ZP_04101293.1| hypothetical protein bthur0008_13520 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228971570|ref|ZP_04132194.1| hypothetical protein bthur0003_13480 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228978181|ref|ZP_04138559.1| hypothetical protein bthur0002_13840 [Bacillus thuringiensis Bt407]
 gi|228781653|gb|EEM29853.1| hypothetical protein bthur0002_13840 [Bacillus thuringiensis Bt407]
 gi|228788229|gb|EEM36184.1| hypothetical protein bthur0003_13480 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228821064|gb|EEM67084.1| hypothetical protein bthur0008_13520 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|326939196|gb|AEA15092.1| sensor protein resE [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 591

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 82/371 (22%), Positives = 155/371 (41%), Gaps = 39/371 (10%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            ++ E  QL SIL + +DG+  +N+EG ++  N           E+       + L +  
Sbjct: 249 ALQQEKEQLASILSSMADGVITLNQEGEVVVINPPAEHFLQVWQEEK-----EIELSKKL 303

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
           PS +      ++  + +Q +E        +   + L   +            + D++E +
Sbjct: 304 PSELVELFHLVVESEQQQVVEINLQ----KGNYVVLMTPLYNQTKIRGAVAVLRDMTEER 359

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + +                + DF+A VSHE+RTP+  + G+SE I +            E
Sbjct: 360 RLE--------------KMRQDFIANVSHELRTPMVMLQGYSEAILDDIVQT--KEEINE 403

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           +   I      +  +VN+LLD++++ESG + LH   V +   V +     Q  A +K + 
Sbjct: 404 FVQIIYDESVRLGKLVNELLDLARMESGNVELHIGEVDIHPFVEKIGRKFQGIAKDKEVE 463

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +   F N I +   D   ++Q+  N++ NAI  T +GG + +     +N  +I  V+D+G
Sbjct: 464 LTVDFKNPIEQYPFDADRMEQVLTNLIDNAIRHTNAGGHVTLVIDTKNNG-LIFEVQDSG 522

Query: 746 VGMTNYELEKAMKPFGQIPNSQQI-------RGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           VG+   ++      F +   ++          G        +AK +V  + GK  + S  
Sbjct: 523 VGIPEEDIPFLFDRFYKADKARTRGKKGGTGLGL------AIAKNIVQGHDGKISVSSVV 576

Query: 799 AKGTLIEIIFP 809
            +GT   +  P
Sbjct: 577 GEGTTFSVYLP 587


>gi|170751185|ref|YP_001757445.1| multi-sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
 gi|170657707|gb|ACB26762.1| multi-sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 910

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 108/645 (16%), Positives = 204/645 (31%), Gaps = 35/645 (5%)

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY 246
             +     A       +   L +I    + +                 R      +    
Sbjct: 3   ADLPLAQPARPGAPGPETEALRQIVDAAAGLILRLDGAGRVTFASAGGRSILGAGAEGLV 62

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYF--GTLQNNSKESFEYLS 304
                D L  E    L     +         +  +            +   +       +
Sbjct: 63  GHPLRDALHPEDAGALADAAGAGRSDTALVRMRGDPGWVATVLVVRAIAGTADRVVTVRA 122

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVY--SHGNLFYANPSFLLLTKYKSVDDIEI 362
                   A      +     VD  P   ++     G   Y N +F              
Sbjct: 123 ASEPEQTYANLRTSRDHYRALVDTLPQLVWMERADTGETIYVNQAFEAYCGPIPTT---R 179

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
           A                        R          R+     +R              +
Sbjct: 180 AARTDRFHPED---AGRIAGAYAKARVQGRSSEIQGRVA----DRAGRFRWHQFVVRPLH 232

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
              + +   G   +  +    +  +  +   L    EA   G+  ++     L  +   +
Sbjct: 233 MGSDLIGWLGSALDIDEIVSAREALVEKGELLRLAQEAAGAGLFDLDLASRDLILSPDSA 292

Query: 483 KLFGYPVEDILRKPFTVFLEQNTP-SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
           +  G+  +          + +  P            +   R+T +              +
Sbjct: 293 RRLGFSGDRPAVVNVAEGMRRVVPADRAATLRAVRAAAAERRTFDVAFRVPDAGGGCRWI 352

Query: 542 RIIIKKLPFSSCYSLTMH----DISEWKQEKNKLSHAKKIAEKESSH-------KSDFLA 590
           + I +        +  +     DI+  K  +  L  AK  AE   +        K++FL+
Sbjct: 353 QAIGRPHRDRDGVAARIVGLTLDITARKDGERALIAAKAAAEAARAEAERADAAKTEFLS 412

Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650
            +SHEIRTPL A+IGF+ ++         +     YA     +G  +  +V+D+LD S +
Sbjct: 413 AMSHEIRTPLNAVIGFAGLLAESGR---LDGDLRRYAELAATAGANLRTVVDDILDFSSV 469

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIAL 709
           E+G +NL  EPV+L   V   + +V+  A  K + +       +P  ++ D   ++QI L
Sbjct: 470 EAGAINLDPEPVALRPLVDACLGIVEAPARAKGLDLVAQIDAAVPDRLVCDPGRLRQILL 529

Query: 710 NILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           N+L+NA+ FTP G ++ +   H         +   V DTG+G+     E+  + F Q  +
Sbjct: 530 NLLNNAVKFTPRG-RVTVDLFHEEAGPRGDTIRFSVTDTGIGIAPDRQERLFQRFSQADS 588

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           S +    GTGLGL +++ +V+   G   + S   +G+       L
Sbjct: 589 SIRRAYGGTGLGLAISRRLVELMGGTMGLVSAEGRGSTFWFALTL 633



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/372 (8%), Positives = 78/372 (20%), Gaps = 23/372 (6%)

Query: 80  PRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR 139
                    +D  G +   S      +G  A  ++G  L D                 + 
Sbjct: 28  DAAAGLILRLDGAGRVTFASAGGRSILGAGAEGLVGHPLRDALHPEDAGALADAAGAGRS 87

Query: 140 QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199
                  T L  + G   +V   L    I               V          A  + 
Sbjct: 88  ------DTALVRMRGDPGWVATVLVVRAIAGTADRVV------TVRAASEPEQTYANLRT 135

Query: 200 LDKKFSHLHEIKKGHSSVEKE--KYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257
               +  L +       +E+      I+  Q+   +        +      H +D  +  
Sbjct: 136 SRDHYRALVDTLPQLVWMERADTGETIYVNQAFEAYCGPIPTTRAARTDRFHPEDAGRIA 195

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
                   +    E +        ++   Q+     +   +   +L             E
Sbjct: 196 GAYAKARVQGRSSEIQGRVADRAGRFRWHQFVVRPLHMGSDLIGWLGSALDIDEIVSARE 255

Query: 318 GENLTPETVDKCPIP-----FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                 E +           F +         +P       +           ++     
Sbjct: 256 ALVEKGELLRLAQEAAGAGLFDLDLASRDLILSPDSARRLGFSGD----RPAVVNVAEGM 311

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
            ++   +    +   R+             +         +  I     ++        G
Sbjct: 312 RRVVPADRAATLRAVRAAAAERRTFDVAFRVPDAGGGCRWIQAIGRPHRDRDGVAARIVG 371

Query: 433 IEPEDVDTRINK 444
           +  +    +  +
Sbjct: 372 LTLDITARKDGE 383


>gi|119945704|ref|YP_943384.1| fused PAS sensor histidine kinase protein and response regulator
           [Psychromonas ingrahamii 37]
 gi|119864308|gb|ABM03785.1| PAS/PAC sensor hybrid histidine kinase [Psychromonas ingrahamii 37]
          Length = 1005

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 88/522 (16%), Positives = 205/522 (39%), Gaps = 43/522 (8%)

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGG 365
                  + ++  +     V++ P    +    G + Y NP F  ++ +  ++ I     
Sbjct: 363 TEIKARQFAEKELHKLSIAVEQSPSSVMITDLEGIIEYVNPKFTEVSGFSRLETIGKNAR 422

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
           +       +    ++   + +++  R+  +    L   + + +  + +        +Q  
Sbjct: 423 I------LQDHGCSSDNYLDMWKQLRSGKSWIGELINQRKDGKEYIEL-IKMAPLVDQQG 475

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
                 G+  +  + + N+R+ E   + L S+L    + I   N++G I+  N+A + ++
Sbjct: 476 VTTNYIGVTEDITERKKNERETEYSKLMLESVLNTVGEAIITANKDGYIIMANQATADIW 535

Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK--ITLGSTKEEKLLSLRI 543
            + ++D++       + +       + +   L     + L +     G     ++  + I
Sbjct: 536 KHNIDDLIGMNLCELMPEKYREAHRNGMKRYLLSGQGKVLNRRIELEGLLATGEIFPMEI 595

Query: 544 IIK--KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
           +I   +      ++  + DI+E K  + K+   +K+         +    ++H+    L 
Sbjct: 596 LISDTRFGEERMFTAALRDITERKATERKMRRMQKMD-----AIGELSGGLAHDFNNLLG 650

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
            IIG  +++  +        + +E       +     D+   LL+ ++  +    L    
Sbjct: 651 IIIGNLDLMSRKL---EAGSKLLEQLETTQNAALRGADLTRRLLNFARHSA----LSSSI 703

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           V+++  ++    ++      K I ++T F++++  +  D   ++   +N+  NA    P+
Sbjct: 704 VNVNSVLANIQKMIAKSLTSK-ISLKTIFSDDLWMVKLDPGDLEDAIVNLSINARDAMPN 762

Query: 722 GGQIIISTT--------------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
           GG++I  T                T  E V + V DTG GM+    E    PF     S 
Sbjct: 763 GGELIFETRNIVVDNNVSQQKANLTPGEYVEVAVSDTGTGMSKEVSEYIFDPFF----ST 818

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           + + +GTGLGL +    V  + G+ Y+ S  + GT  +I FP
Sbjct: 819 KEKNKGTGLGLTMVYGFVQRSKGQIYVSSKVSIGTTFKIYFP 860



 Score = 75.8 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 58/160 (36%), Gaps = 6/160 (3%)

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
             + +     ++  E E+ +L   +E +   + I + EGII   N   +++ G+   + +
Sbjct: 358 RRKLLTEIKARQFAEKELHKLSIAVEQSPSSVMITDLEGIIEYVNPKFTEVSGFSRLETI 417

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553
            K   +  +    S     + + L            +   K+ K     I +  L     
Sbjct: 418 GKNARILQDHGCSSDNYLDMWKQLRSGKSWIG--ELINQRKDGKEYIELIKMAPLVDQQG 475

Query: 554 ----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
               Y     DI+E K+ + +  ++K + E   +   + +
Sbjct: 476 VTTNYIGVTEDITERKKNERETEYSKLMLESVLNTVGEAI 515



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/308 (9%), Positives = 76/308 (24%), Gaps = 17/308 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKRQNTWYGKT 147
            D  G ++ ++ +  +  G    + IG     +       D    +   L+   +W G+ 
Sbjct: 392 TDLEGIIEYVNPKFTEVSGFSRLETIGKNARILQDHGCSSDNYLDMWKQLRSGKSWIGEL 451

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                +G      I +A  P+  +    + +   G+              +        +
Sbjct: 452 INQRKDGKEYIELIKMA--PLVDQQGVTTNY--IGVTEDITERKKNERETEYSKLMLESV 507

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHL--RMKNKVSSLTEYYAHKDDVLKTEK----YPL 261
                       +   I         +     + +  +       +   +  +      L
Sbjct: 508 LNTVGEAIITANKDGYIIMANQATADIWKHNIDDLIGMNLCELMPEKYREAHRNGMKRYL 567

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
           L+ +   L  + +   +                   E   + +     +     +     
Sbjct: 568 LSGQGKVLNRRIELEGLLATGEIFPMEILISDTRFGEERMFTAALRDITERKATERKMRR 627

Query: 322 TPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
             +            S G     N    ++     +         S LL+  + + N A+
Sbjct: 628 MQKM-----DAIGELSGGLAHDFNNLLGIIIGNLDL-MSRKLEAGSKLLEQLETTQNAAL 681

Query: 382 KPVMLYRS 389
           +   L R 
Sbjct: 682 RGADLTRR 689


>gi|60681532|ref|YP_211676.1| putative two-component system sensor kinase/response regulator
           fusion protein [Bacteroides fragilis NCTC 9343]
 gi|60492966|emb|CAH07744.1| putative two-component system sensor kinase/response regulator
           fusion protein [Bacteroides fragilis NCTC 9343]
          Length = 899

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 102/484 (21%), Positives = 185/484 (38%), Gaps = 29/484 (5%)

Query: 337 SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA 396
             G L +AN  F L  +     D+ +            ++     +       +   +  
Sbjct: 268 RDGTLIFANRQFRLNHRIAEQADLSLIRVFD---VVGDMTCIEDWEERYRSIREGQTLNF 324

Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
            A           +   T       +             +  +    + +++     + +
Sbjct: 325 LAYQPLKHDKNTLAFEGTMYSVTTDDGEETFWSF---THDISERIRYESQIKRFNRIMDT 381

Query: 457 ILEATSDGIAIIN--REGIILSTNR-AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
            +E    GI + +   +   +  NR + ++      E+ +      +             
Sbjct: 382 TMENIPAGIVVKDIENDFRYIYRNRESYNR--DISSENAIGMNDFDYYPPEMAQQKRKED 439

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLR---IIIKKLPFSSCYSLTMHDISEWKQEKNK 570
            EI +      +  I  G  K   LL L    I+++   FS        DI++ +  + +
Sbjct: 440 MEIAATGK--GMHWIMEGKDKNGNLLILDKQKIMVESEDFSPIIVSIEWDITQLELMRRE 497

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           L  +K+ AE     KS FLA +SHEIRTPL AI+GFS +I              EY   +
Sbjct: 498 LIESKEKAETSDKLKSAFLANMSHEIRTPLNAIVGFSRIISESDNA----EERREYYEIV 553

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
           D +   +L ++N++LD+SKIESG +   + PV L     E          +  + +R   
Sbjct: 554 DANNERLLQLINEILDLSKIESGIVEFTYGPVRLHPLCKEIHDAHVFRCPQ-GVELRFDS 612

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-VILRVRDTGVGMT 749
            +    I +D   + Q+  N++ NA  FT  G    +S  +    E V+  V+DTG+G+ 
Sbjct: 613 PDEALSIHSDKNRIFQVFSNLIGNAFKFTTEGS---VSYGYKQEGERVVFYVKDTGLGIE 669

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             +L +  + F ++ N      +GTGLGL + K +++   G+  + S    GT      P
Sbjct: 670 PEKLGRVFQRFAKLNNF----AQGTGLGLSICKTIIERLGGEIAVSSEVGTGTTFTFWLP 725

Query: 810 LYDT 813
           L + 
Sbjct: 726 LENV 729



 Score = 47.3 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/128 (14%), Positives = 37/128 (28%), Gaps = 4/128 (3%)

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           IL+ TSD + ++++ G  L  +   S L+    + +L K     L  +T   +      +
Sbjct: 14  ILQLTSDTLILVDKNGTCLDIDPH-SDLWFLQEDRLLGKNLFNLLPDHTFQKLLPDFRRV 72

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKK 576
               +             E       +                DI+     K +L     
Sbjct: 73  TQQGITVNRNYRLPLEGGETYYFKCIMQPY---DGDKVLCQYRDITARSNVKLQLERTNY 129

Query: 577 IAEKESSH 584
             ++    
Sbjct: 130 ELKEIQKA 137



 Score = 40.0 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 18/193 (9%), Positives = 48/193 (24%), Gaps = 12/193 (6%)

Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
           ++R  +      + I    +              +    + + G      D +  +  + 
Sbjct: 192 ANRRELLKEYIEYRILLEGQVYYMRQQCYLRNEEEDGNIVLE-GYIQNITDIQRKRNDI- 249

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL----EQN 504
                L   +    + +    R+G ++  NR       + + +              +  
Sbjct: 250 ---NTLTHAINNAKESVYAARRDGTLIFANRQFR--LNHRIAEQADLSLIRVFDVVGDMT 304

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI-IIKKLPFSSCYSLTMHDISE 563
                      I        L    L   K        +  +        +    HDISE
Sbjct: 305 CIEDWEERYRSIREGQTLNFLAYQPLKHDKNTLAFEGTMYSVTTDDGEETFWSFTHDISE 364

Query: 564 WKQEKNKLSHAKK 576
             + ++++    +
Sbjct: 365 RIRYESQIKRFNR 377


>gi|309789683|ref|ZP_07684263.1| multi-sensor signal transduction histidine kinase [Oscillochloris
           trichoides DG6]
 gi|308228169|gb|EFO81817.1| multi-sensor signal transduction histidine kinase [Oscillochloris
           trichoides DG6]
          Length = 526

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 77/368 (20%), Positives = 162/368 (44%), Gaps = 23/368 (6%)

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
            E  +L +++E ++DG  II+    I + N+A+ +L G+  E+ + +P    L       
Sbjct: 166 REKQRLDAMIEQSADGALIIDSRWRITTFNKAMEQLTGWSREEAIGRPCAEILAIQGAQG 225

Query: 509 MNHYLTEILSLDLRQTLEKITLGS--TKEEKLLSLRIIIKKLPFSSC----YSLTMHDIS 562
            N  LT             +  G   +++ + + ++                   + D++
Sbjct: 226 ENICLTACPLQQRPPLENPLVEGQITSRDGREIFVQSRYAAQYGPGGSFLGAIANVRDVT 285

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
             ++ + +L +              F++ +SHE++TP++ I G++  +            
Sbjct: 286 AQRR-EAELQNT-------------FISVISHELKTPVSIIKGYASTLARTD-ATFSPDM 330

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             E    I+   + +   + DLLD+S++ +G   L     +L   V++ +          
Sbjct: 331 LREGLTVIEEEADRLARQIQDLLDVSRLAAGGARLDRCDFALSSLVADVVRSFAAQVEGH 390

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
                   A+++P I  D   ++Q+  N++SNAI ++P GG I I     +    ++ V 
Sbjct: 391 -FEFELRLADDMPPIHGDYERLRQVLSNLISNAIKYSPEGGTIRIGARAEAE-RAVVYVA 448

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G+G+   E E+  + F ++ N  + + +G+GLGL LA+A+++A+ G+ ++ S   +G 
Sbjct: 449 DQGIGIAPEEHEQIFQRFYRVDNRLRRQTQGSGLGLYLARAIIEAHGGRIWVESQLGRGA 508

Query: 803 LIEIIFPL 810
                 PL
Sbjct: 509 RFLFTLPL 516



 Score = 43.5 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 30/324 (9%), Positives = 65/324 (20%), Gaps = 12/324 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL--LKRQNTWYGK 146
           ID+   +   ++ + +  G    + IG    ++  I      N       L+++      
Sbjct: 185 IDSRWRITTFNKAMEQLTGWSREEAIGRPCAEILAIQGAQGENICLTACPLQQRPPLENP 244

Query: 147 TTLWPIEGTNLY-VPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
                I   +   + +       Y     F G      V           L        S
Sbjct: 245 LVEGQITSRDGREIFVQSRYAAQYGPGGSFLGA--IANVRDVTAQRREAELQNTFISVIS 302

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
           H  +                     P  LR    V         +      +   L    
Sbjct: 303 HELKTPVSIIKGYASTLARTDATFSPDMLREGLTVIEEEADRLARQIQDLLDVSRLAAGG 362

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
                      ++  +               +          H           NL    
Sbjct: 363 ARLDRCDFALSSLVADVVRSFAAQVEGHFEFELRLADDMPPIHGDYERLRQVLSNLISNA 422

Query: 326 VDKCPIPFFVYSHGN------LFYANPSFLLLTKYKSVDDIEIAGGLS-TLLDAPKLSDN 378
           +   P    +           + Y     + +   +     +    +   L    + S  
Sbjct: 423 IKYSPEGGTIRIGARAEAERAVVYVADQGIGIAPEEHEQIFQRFYRVDNRLRRQTQGSGL 482

Query: 379 NAIKPVMLYRSDRTCIAASARLHT 402
                  +  +    I   ++L  
Sbjct: 483 GLYLARAIIEAHGGRIWVESQLGR 506


>gi|222151605|ref|YP_002560761.1| hypothetical protein MCCL_1358 [Macrococcus caseolyticus JCSC5402]
 gi|222120730|dbj|BAH18065.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 570

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 75/363 (20%), Positives = 160/363 (44%), Gaps = 21/363 (5%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           + +++  +L + L+       ++N  G ++  N      F    +       TV   ++ 
Sbjct: 224 EQKLQRNRLETTLQNIPSATLLVNNYGEVVIANETFLNFFNRGNKIKKAHYDTVIEHKDL 283

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
             ++   +     ++              +  ++ +    KK        + +HDI++ K
Sbjct: 284 KRMIKEAIATEKPINETIEHNVNVHKKYFDAAVVPVLS--KKRKRIEGIVIVLHDITQLK 341

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
             +                + DF+A VSHE++TP+T+I GF+E + +             
Sbjct: 342 ILE--------------QMRKDFVANVSHELKTPITSIKGFTETLLDG--AKEDKDTLEM 385

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           + + I +  N +  +V++LL++SKIE      +   V+L + V  ++ +V   A +K I 
Sbjct: 386 FLDIILKESNRIQVLVSELLELSKIEQANH-FNMVKVNLPQKVFNSVEVVYPLAEKKNIN 444

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
                  N+  +LA+   +KQ+ +N+LSNAI+++P   ++ +     ++ E I+ + D G
Sbjct: 445 FNLELEKNL-FVLAEPSKLKQVMINLLSNAINYSPEDAEVTVKAYLKAD-ECIVEIIDQG 502

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+   E  +  + F ++  ++     GTGLGL + K +++   G+  + S   KG+   
Sbjct: 503 IGIAPEETTRIFERFYRVDKARSRDSGGTGLGLAIVKHIIEVFNGEIDVESELGKGSTFR 562

Query: 806 IIF 808
           I  
Sbjct: 563 IKL 565


>gi|167469341|ref|ZP_02334045.1| putative aerobic respiration control sensor protein ArcB [Yersinia
           pestis FV-1]
          Length = 616

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 79/374 (21%), Positives = 162/374 (43%), Gaps = 16/374 (4%)

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
                + ++  +   L S L+A+ D +   N +      NRA+  L G   + ++     
Sbjct: 142 HREQAQIELGQQSALLRSFLDASPDLVYYRNEDNEFSGCNRAMELLTGKSEKQLVGLTPK 201

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII--KKLPFSSCYSL 556
                +    +     ++   ++  T E+  +     +    LR +    ++        
Sbjct: 202 DVYAPDIAEKVMETDEKVFRHNVSLTYEQWLVYPDGRKACFELRKVPFYDRVGKRHGLMG 261

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
              DI+E K+ ++ L +        S  K+ F++ +SHE+RTPL  I+G S ++ +    
Sbjct: 262 FGRDITERKRYQDALEN-------ASRDKTTFISTISHELRTPLNGIVGLSRILLDTEL- 313

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
              +   ++Y   I  S   + +I ND++++ K+E  K+ L  +PV     +++  +L  
Sbjct: 314 ---DAEQLKYLKTIHVSAITLGNIFNDIIEMDKLERRKVQLDNQPVDFTGFMADLENLSG 370

Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
           L    K +         +P  ++AD   ++QI  N++ NA+ FT  G +I++      N+
Sbjct: 371 LLVQPKGLKFIMEPQLPLPEKVIADGTRLRQILWNLIGNAVKFTQQG-KIVVRVRREGND 429

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQI-PNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
            +I  V D+G+G+   E +K    + Q+   +      GTG+GL ++K +  +  G   +
Sbjct: 430 RLIFEVEDSGMGIPEDEQDKIFAMYYQVKDRNGGRPATGTGIGLAVSKRLAQSMGGDITV 489

Query: 795 FSTPAKGTLIEIIF 808
            ST   G+   +  
Sbjct: 490 KSTQGVGSCFTLTI 503



 Score = 41.6 bits (96), Expect = 0.60,   Method: Composition-based stats.
 Identities = 16/124 (12%), Positives = 35/124 (28%), Gaps = 5/124 (4%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN-TWYGKTTLWPIE 153
               +  +    G    +++G+   DV      +      + + R N +   +  L   +
Sbjct: 177 FSGCNRAMELLTGKSEKQLVGLTPKDVYAPDIAEKVMETDEKVFRHNVSLTYEQWLVYPD 236

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
           G       +L  +P Y R  +  G  GFG           +   +   +  +        
Sbjct: 237 GRKACF--ELRKVPFYDRVGKRHGLMGFG--RDITERKRYQDALENASRDKTTFISTISH 292

Query: 214 HSSV 217
               
Sbjct: 293 ELRT 296



 Score = 39.6 bits (91), Expect = 2.5,   Method: Composition-based stats.
 Identities = 23/228 (10%), Positives = 55/228 (24%), Gaps = 14/228 (6%)

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ----EDFHTINLNQYTKKQYFGTLQNN 295
           +S + E        L      L       L       E+   +N     +++        
Sbjct: 73  LSVVVEQLEESRQRLSRLVDKLEVMRHRDLELNKQLTENITQLNQEIVEREKAEKAHLQV 132

Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKY 354
             +  E + HR    +     +   L    +D  P   +  +        N +  LLT  
Sbjct: 133 VDKLKEEMGHREQAQIE--LGQQSALLRSFLDASPDLVYYRNEDNEFSGCNRAMELLTGK 190

Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
                +        L      + + A K +           +      + +         
Sbjct: 191 SEKQLVG-------LTPKDVYAPDIAEKVMETDEKVFRHNVSLTYEQWLVYPDGRKACFE 243

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
                  ++  +     G   +  + +  +  +E       + +   S
Sbjct: 244 LRKVPFYDRVGKRHGLMGFGRDITERKRYQDALENASRDKTTFISTIS 291


>gi|298675082|ref|YP_003726832.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalobium evestigatum Z-7303]
 gi|298288070|gb|ADI74036.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalobium evestigatum Z-7303]
          Length = 677

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 93/512 (18%), Positives = 201/512 (39%), Gaps = 22/512 (4%)

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
             +   +   +   + +D       V  +   +   N     +  Y   + I     +  
Sbjct: 173 ERTKQLEIERDKAQKYLDISGAIIIVLDNNQRIELINNKGCEVLGYDKTELIGKN--MYE 230

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
                +  D      +            +     I  N E  +   +      +     +
Sbjct: 231 NFVPREYMDKVNN--ISNNLIQGHEDNNNFINPIIGKNGEERIISWYNSV-LKDDNGSII 287

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
                  +  +    K  ++    Q   + E +  G+      G I+  N+ + ++   P
Sbjct: 288 GTLSSGIDVTELINLKNSLQESKNQYKQLFEESPVGLLKCKSNGKIVDVNKRILEILNSP 347

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            ++   K   +       S  +  L +  S +     E+  +  +   +   +   I  L
Sbjct: 348 SKEETLKFNLLESPHIKNSGFDEELRKAFSNNRIVKNERKYI--SFWGRKRWIYYKIVPL 405

Query: 549 PFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESS-------HKSDFLARVSHEIR 597
                      + + DI++ K+ + +L       +K +         K+ F++ VSHE+R
Sbjct: 406 GDEEGNVNESIIALDDITQRKETETQLLKYYDDLQKANRELKSLSEMKNRFISNVSHELR 465

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TP+T I G+S ++ N++ G L N +  +  + I +S   +  +++ L+ I+ +ES     
Sbjct: 466 TPITNIKGYSNLLNNKKLGEL-NDKQSKAVSVISQSCERLRWLIDTLIHINILESDNGIQ 524

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
           H + +SL   ++  +S   +Y  +K + + T+  +N+P + A+   ++Q+ ++IL NA  
Sbjct: 525 HTQKISLSSLLNNVVSENSVYFFDKGLNLTTNIDSNLPLVDANPEYLEQVFVHILDNACK 584

Query: 718 FTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
           FTPSGG++ +      +  + + V D G+G+           F Q  +S + R  GTG G
Sbjct: 585 FTPSGGKVDVHAF--DDGNLHIIVSDNGIGIDEESANNIFDLFYQKDDSSKRRYSGTGAG 642

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +   K +++ + G  ++ S   +GT + II P
Sbjct: 643 MYFCKKIIEKHHGNIWVESKIKEGTDVHIILP 674



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/196 (12%), Positives = 57/196 (29%), Gaps = 22/196 (11%)

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTR------------------INKRKMEIEVM 452
           +      +   +             +    +                     +++EIE  
Sbjct: 124 IWFDVRAYPIFDNNGNLTNVMEHLRDITQEKKLENKIKDQRNNLEKIVYERTKQLEIERD 183

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
           +    L+ +   I +++    I   N    ++ GY   +++ K               + 
Sbjct: 184 KAQKYLDISGAIIIVLDNNQRIELINNKGCEVLGYDKTELIGKNMYENFVPREYMDKVNN 243

Query: 513 LTEILSLDLRQTLEKI--TLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEK 568
           ++  L          I   +G   EE+++S    + K    S      +  D++E    K
Sbjct: 244 ISNNLIQGHEDNNNFINPIIGKNGEERIISWYNSVLKDDNGSIIGTLSSGIDVTELINLK 303

Query: 569 NKLSHAKKIAEKESSH 584
           N L  +K   ++    
Sbjct: 304 NSLQESKNQYKQLFEE 319



 Score = 39.2 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 44/125 (35%), Gaps = 10/125 (8%)

Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528
           +    I+  N+A    F    E++  K     + +N P  +        S      ++ I
Sbjct: 60  DTNHNIIKYNKAGYSFFNLKPEEVAGKKCYEIIGRNKPCKICATSKVYKSKKPEHVVKYI 119

Query: 529 TLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
                 EE  +   +    +  ++         + DI++ K+ +NK+   +   EK    
Sbjct: 120 ------EEMDIWFDVRAYPIFDNNGNLTNVMEHLRDITQEKKLENKIKDQRNNLEKIVYE 173

Query: 585 KSDFL 589
           ++  L
Sbjct: 174 RTKQL 178


>gi|281205977|gb|EFA80166.1| histidine kinase [Polysphondylium pallidum PN500]
          Length = 1441

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 96/397 (24%), Positives = 180/397 (45%), Gaps = 44/397 (11%)

Query: 442  INKRKMEIE--VMQL---CSILEATSDGIAIINREGIIL----STNRAVSKLFGYPVEDI 492
                ++E      +L     IL      + ++N +G+I+    + N+    + G+    +
Sbjct: 735  RAASELEGRKIREELILSEIILNQFPSCMFLVNNQGVIVREFGAINQ----IMGFDSTCL 790

Query: 493  LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
              K  ++F  +     +   L  ++    + T+ K    +  ++K     + ++++   +
Sbjct: 791  -GKNISMF--EKGKEEIYQALHSLIKSGTKDTVVKEITLTRMDDKEFFTEVSLREIFDQN 847

Query: 553  C----YSLTMHDISEWKQEK--------------NKLSHAKKIAEKESSHKSDFLARVSH 594
                   + + DI+E KQ +               +L  A+  A K    KS FLA +SH
Sbjct: 848  GMPLGIMVVIRDITESKQIQHSLEEVNHQLSCKNKELVEARDRALKAIQMKSKFLATISH 907

Query: 595  EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
            EIRTP+  +IG +E++   +     NP   E A+ I +SG L+L I +D+LD SKIE+ K
Sbjct: 908  EIRTPMNGVIGMAEMLLTSKL----NPEQYEIADTIYKSGELLLSITSDILDFSKIEASK 963

Query: 655  MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILS 713
            + L          +    + + +  ++K I I   F  ++P  ++ D   ++QI LNI  
Sbjct: 964  LELEMIEFDFIGCIEGVFNTLSISLDKK-IEIILLFEKDVPTKLIGDPNRLRQIILNIGH 1022

Query: 714  NAIHFTPSG---GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
            NAI FT  G   G I + +      ++ + ++DTG+G+   + +   +PF Q+ +S   +
Sbjct: 1023 NAIKFTDKGHVFGHISVVSRERGTVQICVSIQDTGIGIEPEKRDMLFEPFSQLDSSTTRK 1082

Query: 771  GEGTGLGLPLAKAMVDANMGKFYIF-STPAKGTLIEI 806
              G+GLGL +   +     G   +  S P KG++  I
Sbjct: 1083 YGGSGLGLAICSPLAKLMDGDVSLDWSQPGKGSIFSI 1119


>gi|39997909|ref|NP_953860.1| sensory box histidine kinase/response regulator [Geobacter
           sulfurreducens PCA]
 gi|39984854|gb|AAR36210.1| sensory box histidine kinase/response regulator [Geobacter
           sulfurreducens PCA]
          Length = 882

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 99/501 (19%), Positives = 187/501 (37%), Gaps = 52/501 (10%)

Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399
            + +   +   ++ Y S +       LS +    K     A+  +               
Sbjct: 277 RIKWIGGALNAISGYSSEEMFARGCWLSIVHPDDKHPTAEALASL-------KPGDIRDI 329

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459
              I    E+   +T     +     + +   G   +  D +  +  + +      + + 
Sbjct: 330 SFRIIAKDESIRWITDSCQCEQGATEDELILYGAASDTTDRKKAEALLHLT----RASVN 385

Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL 519
           A SD I  I  +   +  N A  +  GY  E++L +        + P V   +  E+   
Sbjct: 386 AVSDAIFWITPDARFVDVNEAACRTLGYSREELLNRGVFDVDPDSPPEVWAQHFPELRRQ 445

Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY--SLTMHDISEWKQEKNKLSHAKKI 577
               TL   +   TK+ +++ + I+   +   +       + DI+E K+ + +    +K 
Sbjct: 446 G---TLRFESRHRTKDGRIIPVEIVANYIRHDNDEFNCAVVRDITERKRAEEEHESLEKQ 502

Query: 578 AEKES--SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
                           ++H+    LTAI+G ++ +   R  P       +    I+R+ N
Sbjct: 503 LLHAQKLESLGVLAGGIAHDFNNILTAIVGNTD-LALMRLNPESP--VRDNLARIERAAN 559

Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695
              D+   +L  S    GK     EP+ L+  V E   ++Q+  ++K + +R +FA+++P
Sbjct: 560 RASDLAKQMLAYS----GKGKFVIEPIDLNRLVEEMTHMLQVSISKKAV-LRFNFADSLP 614

Query: 696 RILADLRSVKQIALNILSNAIHF-TPSGGQIIIST-----------------THTSNEEV 737
            + AD   ++QI +N++ NA        G I IST                 +      V
Sbjct: 615 TVDADATQLRQIIMNLVINASEAIADKSGVIAISTGCMQCDRKYLSNAWLNESIPEGLYV 674

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
            L V DTG GM    + K   PF         +  G GLG+     +V  + G   ++S 
Sbjct: 675 WLEVADTGCGMDRETVSKIFDPFFTT------KFTGRGLGMAAVLGIVRGHKGAIRVYSE 728

Query: 798 PAKGTLIEIIFPLYDTSHPHD 818
           P +GT  +++ P  D   P D
Sbjct: 729 PGRGTTFKVLLPAGD--KPKD 747



 Score = 65.0 bits (157), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 40/262 (15%), Positives = 89/262 (33%), Gaps = 29/262 (11%)

Query: 10  PEDILTSNCKGNTQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTD---QNQESVSNTN 66
           P DI   + +   +D S + I +  + E+   E+        S+ TD             
Sbjct: 323 PGDIRDISFRIIAKDESIRWITDSCQCEQGATEDELILYGAASDTTDRKKAEALLHLTRA 382

Query: 67  YLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH 126
            +++ +  +F          W I       +++E   +T+G    +++   + DV     
Sbjct: 383 SVNAVSDAIF----------W-ITPDARFVDVNEAACRTLGYSREELLNRGVFDV----D 427

Query: 127 IDPNNHIGDL----LKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFG 182
            D    +       L+RQ T   ++     +G    +P+++ A  I   N EF+      
Sbjct: 428 PDSPPEVWAQHFPELRRQGTLRFESRHRTKDGRI--IPVEIVANYIRHDNDEFN----CA 481

Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS 242
           +V             + L+K+  H  +++          +D  +  +          +  
Sbjct: 482 VVRDITERKRAEEEHESLEKQLLHAQKLESLGVLAGGIAHDFNNILTAIVGN-TDLALMR 540

Query: 243 LTEYYAHKDDVLKTEKYPLLTS 264
           L      +D++ + E+     S
Sbjct: 541 LNPESPVRDNLARIERAANRAS 562


>gi|154252383|ref|YP_001413207.1| integral membrane sensor signal transduction histidine kinase
           [Parvibaculum lavamentivorans DS-1]
 gi|154156333|gb|ABS63550.1| integral membrane sensor signal transduction histidine kinase
           [Parvibaculum lavamentivorans DS-1]
          Length = 523

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 100/260 (38%), Positives = 158/260 (60%), Gaps = 8/260 (3%)

Query: 564 WKQEK---NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
            KQ +    +L  A + A      KS FLA +SHE+RTPL AI+GFSE++  + FGPL N
Sbjct: 260 RKQLEKTSAELLVALQSASSADQAKSQFLATMSHELRTPLNAILGFSEIMAAETFGPLNN 319

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
            RY +Y   I +SG  +L ++ND+LD +++++G+++LH E + L+EAV++ I ++   A 
Sbjct: 320 ARYSDYVQDIFKSGKHLLSLINDVLDFTRVDAGELHLHEEDIDLEEAVTDTIRMISAQAK 379

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
            + I +    A ++P ++AD R ++Q+ LN+LSNA+ FTP GG++ I         + LR
Sbjct: 380 AQNIALDYEIAADLPHLIADHRRIRQVLLNLLSNAVKFTPDGGEVHIGALVADGAML-LR 438

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V DTG+G+    +  A++ FGQI +    + EGTGLGLPLAK +++ + G   I S   +
Sbjct: 439 VTDTGIGIAAENIPLALERFGQIDSDLSRKYEGTGLGLPLAKCLMEHHGGCLDIASELGR 498

Query: 801 GTLIEIIFP----LYDTSHP 816
           GT + + FP    +    HP
Sbjct: 499 GTTVTVTFPPERVVAAAQHP 518


>gi|253565261|ref|ZP_04842716.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|251945540|gb|EES85947.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
          Length = 899

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 102/484 (21%), Positives = 185/484 (38%), Gaps = 29/484 (5%)

Query: 337 SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA 396
             G L +AN  F L  +     D+ +            ++     +       +   +  
Sbjct: 268 RDGTLIFANRQFRLNHRIAEQADLSLIRVFD---VVGDMTCIEDWEERYRSIREGQTLNF 324

Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
            A           +   T       +             +  +    + +++     + +
Sbjct: 325 LAYQPLKHDKNTLAFEGTMYSVTTDDGEETFWSF---THDISERIRYESQIKRFNRIMDT 381

Query: 457 ILEATSDGIAIIN--REGIILSTNR-AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
            +E    GI + +   +   +  NR + ++      E+ +      +             
Sbjct: 382 TMENIPAGIVVKDIENDFRYIYRNRESYNR--DISSENAIGMNDFDYYPPEMAQQKRKED 439

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLR---IIIKKLPFSSCYSLTMHDISEWKQEKNK 570
            EI +      +  I  G  K   LL L    I+++   FS        DI++ +  + +
Sbjct: 440 MEIAATGK--GMHWIMEGKDKNGNLLILDKQKIMVESEDFSPIIVSIEWDITQLELMRRE 497

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           L  +K+ AE     KS FLA +SHEIRTPL AI+GFS +I              EY   +
Sbjct: 498 LIESKEKAETSDKLKSAFLANMSHEIRTPLNAIVGFSRIISESDNA----EERREYYEIV 553

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
           D +   +L ++N++LD+SKIESG +   + PV L     E          +  + +R   
Sbjct: 554 DANNERLLQLINEILDLSKIESGIVEFTYGPVRLHTLCKEIHDAHVFRCPQ-GVELRFDS 612

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-VILRVRDTGVGMT 749
            +    I +D   + Q+  N++ NA  FT  G    +S  +    E V+  V+DTG+G+ 
Sbjct: 613 PDEALSIHSDKNRIFQVFSNLIGNAFKFTTEGS---VSYGYKQEGERVVFYVKDTGLGIE 669

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             +L +  + F ++ N      +GTGLGL + K +++   G+  + S    GT      P
Sbjct: 670 PEKLGRVFQRFAKLNNF----AQGTGLGLSICKTIIERLGGEIAVSSEVGTGTTFTFWLP 725

Query: 810 LYDT 813
           L + 
Sbjct: 726 LENV 729



 Score = 47.3 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/128 (14%), Positives = 37/128 (28%), Gaps = 4/128 (3%)

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           IL+ TSD + ++++ G  L  +   S L+    + +L K     L  +T   +      +
Sbjct: 14  ILQLTSDTLILVDKNGTCLDIDPH-SDLWFLQEDRLLGKNLFNLLPDHTFQKLLPDFRRV 72

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKK 576
               +             E       +                DI+     K +L     
Sbjct: 73  TQQGITVNRNYRLPLEGGETYYFKCIMQPY---DGDKVLCQYRDITARSNVKLQLERTNY 129

Query: 577 IAEKESSH 584
             ++    
Sbjct: 130 ELKEIQKA 137



 Score = 40.0 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 18/193 (9%), Positives = 48/193 (24%), Gaps = 12/193 (6%)

Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
           ++R  +      + I    +              +    + + G      D +  +  + 
Sbjct: 192 ANRRELLKEYIEYRILLEGQVYYMRQQCYLRNEEEDGNIVLE-GYIQNITDIQRKRNDI- 249

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL----EQN 504
                L   +    + +    R+G ++  NR       + + +              +  
Sbjct: 250 ---NTLTHAINNAKESVYAARRDGTLIFANRQFR--LNHRIAEQADLSLIRVFDVVGDMT 304

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI-IIKKLPFSSCYSLTMHDISE 563
                      I        L    L   K        +  +        +    HDISE
Sbjct: 305 CIEDWEERYRSIREGQTLNFLAYQPLKHDKNTLAFEGTMYSVTTDDGEETFWSFTHDISE 364

Query: 564 WKQEKNKLSHAKK 576
             + ++++    +
Sbjct: 365 RIRYESQIKRFNR 377


>gi|53713284|ref|YP_099276.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
 gi|52216149|dbj|BAD48742.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
          Length = 899

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 102/484 (21%), Positives = 185/484 (38%), Gaps = 29/484 (5%)

Query: 337 SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA 396
             G L +AN  F L  +     D+ +            ++     +       +   +  
Sbjct: 268 RDGTLIFANRQFRLNHRIAEQADLSLIRVFD---VVGDMTCIEDWEERYRSIREGQTLNF 324

Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
            A           +   T       +             +  +    + +++     + +
Sbjct: 325 LAYQPLKHDKNTLAFEGTMYSVTTDDGEETFWSF---THDISERIRYESQIKRFNRIMDT 381

Query: 457 ILEATSDGIAIIN--REGIILSTNR-AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
            +E    GI + +   +   +  NR + ++      E+ +      +             
Sbjct: 382 TMENIPAGIVVKDIENDFRYIYRNRESYNR--DISSENAIGMNDFDYYPPEMAQQKRKED 439

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLR---IIIKKLPFSSCYSLTMHDISEWKQEKNK 570
            EI +      +  I  G  K   LL L    I+++   FS        DI++ +  + +
Sbjct: 440 MEIAATGK--GMHWIMEGKDKNGNLLILDKQKIMVESEDFSPIIVSIEWDITQLELMRRE 497

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           L  +K+ AE     KS FLA +SHEIRTPL AI+GFS +I              EY   +
Sbjct: 498 LIESKEKAETSDKLKSAFLANMSHEIRTPLNAIVGFSRIISESDNA----EERREYYEIV 553

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
           D +   +L ++N++LD+SKIESG +   + PV L     E          +  + +R   
Sbjct: 554 DANNERLLQLINEILDLSKIESGIVEFTYGPVRLHTLCKEIHDAHVFRCPQ-GVELRFDS 612

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-VILRVRDTGVGMT 749
            +    I +D   + Q+  N++ NA  FT  G    +S  +    E V+  V+DTG+G+ 
Sbjct: 613 PDEALSIHSDKNRIFQVFSNLIGNAFKFTTEGS---VSYGYKQEGERVVFYVKDTGLGIE 669

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             +L +  + F ++ N      +GTGLGL + K +++   G+  + S    GT      P
Sbjct: 670 PEKLGRVFQRFAKLNNF----AQGTGLGLSICKTIIERLGGEIAVSSEVGTGTTFTFWLP 725

Query: 810 LYDT 813
           L + 
Sbjct: 726 LENV 729



 Score = 47.3 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/128 (14%), Positives = 37/128 (28%), Gaps = 4/128 (3%)

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           IL+ TSD + ++++ G  L  +   S L+    + +L K     L  +T   +      +
Sbjct: 14  ILQLTSDTLILVDKNGTCLDIDPH-SDLWFLQEDRLLGKNLFNLLPDHTFQKLLPDFRRV 72

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKK 576
               +             E       +                DI+     K +L     
Sbjct: 73  TQQGITVNRNYRLPLEGGETYYFKCIMQPY---DGDKVLCQYRDITARSNVKLQLERTNY 129

Query: 577 IAEKESSH 584
             ++    
Sbjct: 130 ELKEIQKA 137



 Score = 40.0 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 18/193 (9%), Positives = 48/193 (24%), Gaps = 12/193 (6%)

Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
           ++R  +      + I    +              +    + + G      D +  +  + 
Sbjct: 192 ANRRELLKEYIEYRILLEGQVYYMRQQCYLRNEEEDGNIVLE-GYIQNITDIQRKRNDI- 249

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL----EQN 504
                L   +    + +    R+G ++  NR       + + +              +  
Sbjct: 250 ---NTLTHAINNAKESVYAARRDGTLIFANRQFR--LNHRIAEQADLSLIRVFDVVGDMT 304

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI-IIKKLPFSSCYSLTMHDISE 563
                      I        L    L   K        +  +        +    HDISE
Sbjct: 305 CIEDWEERYRSIREGQTLNFLAYQPLKHDKNTLAFEGTMYSVTTDDGEETFWSFTHDISE 364

Query: 564 WKQEKNKLSHAKK 576
             + ++++    +
Sbjct: 365 RIRYESQIKRFNR 377


>gi|182412949|ref|YP_001818015.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Opitutus terrae PB90-1]
 gi|177840163|gb|ACB74415.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Opitutus terrae PB90-1]
          Length = 989

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 95/806 (11%), Positives = 222/806 (27%), Gaps = 121/806 (15%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKM--IGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK 146
           ID  G + + ++      G    +M  +G     V+    +     + +    +      
Sbjct: 80  IDEDGRVLDANQRALTLYGYTLAEMQALGPGHLAVNRGEELIHQRTLREADDGRVI---A 136

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
           T     +G+       L+     +R     G      VH   +    +   +R  +    
Sbjct: 137 TLHRRKDGSTF--DATLSGAACVTR----RGACLLATVHDVSLIKAAQRKVERTRQLQLM 190

Query: 207 LHEIKKGHSSVEKE----------------------KYDIFSQQSPPPHLRMKNKVSSLT 244
           L ++ +     E                                +  P     +    L 
Sbjct: 191 LAQVNQAIIRAESADQIQEMVCQILVETGLFKLAWIGRLDPESAAIRPAAAAGDDHGYLD 250

Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYT-------------------- 284
           E   + DD  +          E+ +    DF                             
Sbjct: 251 EISVYADDRAEGRGPVGAAIREARISVCNDFLAAAHTSPWHEAAAKHGLRSSIALPVRVA 310

Query: 285 -----------------KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
                             +     L+  + +    L            +    L    ++
Sbjct: 311 GQVRAVLSVYASSPNFFGEDETALLEPVAADLSFALDMLEQEKKREQAEARSVLLGTALE 370

Query: 328 KCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
             P    +    G + +ANP+F+  + Y + + +    G +  L       +     +  
Sbjct: 371 GAPNGILITDLHGTIEWANPAFVRASGYAADELV----GKNPRLLKSGHHRSEFYTELWR 426

Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
                            +                 N          I  +    +  +R+
Sbjct: 427 TILAGQTWHGEVVN---RRKNGELYVEDLTIIPVRNAAGAIRQFVAISQDITGRKGAERR 483

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
           +  +     ++L+  SD I + +    +   NR   +LFG    ++L +        +  
Sbjct: 484 VREQ----AALLDQASDAIVVADLNHRVSFWNRGAERLFGTSAREMLGRTLEEAFALDRD 539

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDIS 562
                +   +      +          +  + + +   +  L               D++
Sbjct: 540 VGPTAFHDALAE---PRDWRGELRSRNQAGRTMIIETSVTMLRDDHGQPTGRLCISADVT 596

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
             K  + +    +++            A +SH++   L  +      +   R   L  PR
Sbjct: 597 HRKALEEQFLRVQRMENLGM-----LAAGISHDLNNILAPMR-MVGPLLRDR---LSEPR 647

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
            +   + ++        +V  +L  ++  +G        V +   + +   ++      K
Sbjct: 648 DLRLLDTLESCAARGAGLVRQILGFAQGVAG----EHRVVQVKHLLRDITDVIAASFP-K 702

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS-------------- 728
            I++      ++  +  +   + Q+ LN+  NA    P GG + +               
Sbjct: 703 SIVLEDEIPADLWPVNGNPTQIHQVVLNLCVNARDAMPEGGTLRLRGQNCLLDEETARTI 762

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                   ++L+V DTG G+    L +  +P            +GTGLGL   + +V  +
Sbjct: 763 EGARPGPWLVLQVEDTGTGIPADVLSRIWEPLFTTKAPD----KGTGLGLSTVRGIVAQH 818

Query: 789 MGKFYIFSTPAKGTLIEIIFPLYDTS 814
            G   + +   +GT   +  P+ +T+
Sbjct: 819 QGLVTVKTEVNRGTTFSVYLPVEETA 844



 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 49/128 (38%), Gaps = 6/128 (4%)

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
           L+  +D   +I+ +G +L  N+    L+GY + ++               +++     + 
Sbjct: 70  LQRAADAALLIDEDGRVLDANQRALTLYGYTLAEMQALGPGHLAVNRGEELIHQ--RTLR 127

Query: 518 SLDLRQTLEKITLGSTKEEKLL--SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575
             D  + +   TL   K+      +L          +C   T+HD+S  K  + K+   +
Sbjct: 128 EADDGRVIA--TLHRRKDGSTFDATLSGAACVTRRGACLLATVHDVSLIKAAQRKVERTR 185

Query: 576 KIAEKESS 583
           ++    + 
Sbjct: 186 QLQLMLAQ 193



 Score = 46.2 bits (108), Expect = 0.023,   Method: Composition-based stats.
 Identities = 27/217 (12%), Positives = 53/217 (24%), Gaps = 12/217 (5%)

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
           LL S  +S        ++      +      +   +  S  +    +    S   D    
Sbjct: 6   LLVSVAASESRGASTRSLTAAGTWELWIIPAVLVVAVASAGWAWWLSRRRSSPQGDGSGR 65

Query: 321 LTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
           L             +   G +  AN   L L  Y   +              P     N 
Sbjct: 66  LPHWLQRAADAALLIDEDGRVLDANQRALTLYGYTLAEMQA---------LGPGHLAVNR 116

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
            + ++  R+ R            +    ++   T        +    +       +    
Sbjct: 117 GEELIHQRTLREADDGRVIATLHRRKDGSTFDATLSGAACVTRRGACL--LATVHDVSLI 174

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
           +  +RK+E    QL  +L   +  I        I   
Sbjct: 175 KAAQRKVE-RTRQLQLMLAQVNQAIIRAESADQIQEM 210


>gi|168211770|ref|ZP_02637395.1| sensory box histidine kinase [Clostridium perfringens B str. ATCC
           3626]
 gi|170764305|ref|ZP_02640759.2| sensory box histidine kinase [Clostridium perfringens CPE str.
           F4969]
 gi|170710282|gb|EDT22464.1| sensory box histidine kinase [Clostridium perfringens B str. ATCC
           3626]
 gi|170713459|gb|EDT25641.1| sensory box histidine kinase [Clostridium perfringens CPE str.
           F4969]
          Length = 821

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 94/388 (24%), Positives = 182/388 (46%), Gaps = 15/388 (3%)

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
           +       +  +    ++ +++E  +L  + E   D I  I+ EG I   N+AV  + GY
Sbjct: 409 LYYVLRINDITEEYKMEKNLKLEEQRLRGVTENIKDLIFTIDFEGKISYVNKAVIDVLGY 468

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
             E+++ K +   L   +   +    ++  + D   T++K+      ++ L+ L  I  +
Sbjct: 469 SEEELIGKNYYDLLLVESNLNIID--SKYFNEDKILTIDKV----RSKKGLVQLESISSR 522

Query: 548 LPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
           +  +      +     +I + ++ +  L +  +  ++    +S+F A +SHE+RTP+  I
Sbjct: 523 IKDNKNNTLGWVRVARNIEDVREIEI-LKNKFEEIKQYDKVRSEFFANLSHELRTPINII 581

Query: 604 IGFSEVIKNQRFGPLGNPR-YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
               +++   +         Y +Y   + ++   +L +VN+L+DI+KI+SG + + F   
Sbjct: 582 YSCIQLLNTSKKNKANFANLYDKYEKTLKQNCFRMLRLVNNLIDITKIDSGFIKMDFINY 641

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
            + +   +    V  Y   K I I          I  D   +++I LN+LSNAI FT  G
Sbjct: 642 DIIKLTEDITMSVIPYVESKNIDIIFDTNCEELEIRCDPDKIERIILNLLSNAIKFTEPG 701

Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
           G+I +S        V +RV+DTG+G+ ++  E   + F Q   S     EG+G+GL L K
Sbjct: 702 GKIEVSI-FADETWVDIRVKDTGIGIPSHMKEFIFERFIQNDKSLNRNKEGSGIGLSLVK 760

Query: 783 AMVDANMGKFYI-FSTPAKGTLIEIIFP 809
           ++V+ + GK ++  S    G+   I+ P
Sbjct: 761 SLVELHEGKVFLRESNE-SGSEFSILLP 787



 Score = 44.6 bits (104), Expect = 0.077,   Method: Composition-based stats.
 Identities = 7/38 (18%), Positives = 17/38 (44%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS 122
             + ID  G +  +++ +   +G    ++IG    D+ 
Sbjct: 445 LIFTIDFEGKISYVNKAVIDVLGYSEEELIGKNYYDLL 482


>gi|325496736|gb|EGC94595.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia fergusonii ECD227]
          Length = 949

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 99/412 (24%), Positives = 170/412 (41%), Gaps = 30/412 (7%)

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL-CSILEATSDGIAI 467
             L +  I                 E        +  +   E  Q    I+ +   GI I
Sbjct: 313 RILILNAILLNVLVGAALFTLARMYERRIFIPAESDAQRLEEHEQFNRKIVASAPVGICI 372

Query: 468 INR-EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
           +   +G+ + +N            +  ++                 LT+I+       ++
Sbjct: 373 LRTIDGVNILSNELAHTYLNMLTHEDRQR-----------------LTQIICGQQVNFVD 415

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
                 T     L +  +  +    +     + D+S   + +  L    + AE+ S  KS
Sbjct: 416 ----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSSRVKMEESLQEMAQAAEQASQSKS 471

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
            FLA VSHE+RTPL  IIG  + +   +  P G  R       ++ S +L+L I++D+LD
Sbjct: 472 MFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR---LVTAMNNSSSLLLKIISDILD 527

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVK 705
            SKIES ++ +     S  E ++   +        K++ +      ++P  +  D   ++
Sbjct: 528 FSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFIEPDVPVTLNGDPMRLQ 587

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           Q+  N+LSNAI FT  G  II+       + + +RVRDTGVG+   E+ +   PF Q+  
Sbjct: 588 QVISNLLSNAIKFTDIG-CIILHLA-RDGDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGT 645

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
             Q   +GTGLGL + + +++   G   + S P  G+   I  PLY   +PH
Sbjct: 646 GVQRNFQGTGLGLAICEKLINMMDGDISVDSEPGMGSQFTIRIPLYGAQYPH 697


>gi|324112761|gb|EGC06737.1| RcsC Alpha-Beta-Loop [Escherichia fergusonii B253]
          Length = 949

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 99/412 (24%), Positives = 170/412 (41%), Gaps = 30/412 (7%)

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL-CSILEATSDGIAI 467
             L +  I                 E        +  +   E  Q    I+ +   GI I
Sbjct: 313 RILILNAILLNVLVGAALFTLARMYERRIFIPAESDAQRLEEHEQFNRKIVASAPVGICI 372

Query: 468 INR-EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
           +   +G+ + +N            +  ++                 LT+I+       ++
Sbjct: 373 LRTIDGVNILSNELAHTYLNMLTHEDRQR-----------------LTQIICGQQVNFVD 415

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
                 T     L +  +  +    +     + D+S   + +  L    + AE+ S  KS
Sbjct: 416 ----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSSRVKMEESLQEMAQAAEQASQSKS 471

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
            FLA VSHE+RTPL  IIG  + +   +  P G  R       ++ S +L+L I++D+LD
Sbjct: 472 MFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR---LVTAMNNSSSLLLKIISDILD 527

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVK 705
            SKIES ++ +     S  E ++   +        K++ +      ++P  +  D   ++
Sbjct: 528 FSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFIEPDVPVTLNGDPMRLQ 587

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           Q+  N+LSNAI FT  G  II+       + + +RVRDTGVG+   E+ +   PF Q+  
Sbjct: 588 QVISNLLSNAIKFTDIG-CIILHLA-RDGDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGT 645

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
             Q   +GTGLGL + + +++   G   + S P  G+   I  PLY   +PH
Sbjct: 646 GVQRNFQGTGLGLAICEKLINMMDGDISVDSEPGMGSQFTIRIPLYGAQYPH 697


>gi|258405005|ref|YP_003197747.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfohalobium retbaense DSM 5692]
 gi|257797232|gb|ACV68169.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfohalobium retbaense DSM 5692]
          Length = 760

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 90/517 (17%), Positives = 184/517 (35%), Gaps = 43/517 (8%)

Query: 312 SAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
                  +       D  P    V   +  L   N  F       + D            
Sbjct: 274 HKELLHQKEEYQTLFDHVPCIVTVQDRNFQLISYNREFSDKFNPSAGDF--------CFR 325

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
                 +     PV    +D       +   ++  + +    +        +     +  
Sbjct: 326 AYKGRHEKCPDCPVERTFADGCS---HSSEESVVRDGQEVHWLVTTS-PICDAEGRIVAA 381

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPV 489
             +  +    +  +R++ +   +  +I     + + +++ E   IL  N +V  ++GY  
Sbjct: 382 MEMCLDITPRKRLERQLAMSEKKYHAIFNNIPNPVFVLDPEKLFILDCNDSVQAVYGYTR 441

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
           E+IL +PF      +        L E L ++  +          K    +++R+   + P
Sbjct: 442 EEILNRPFADLFFDDDRDHYLPRLHECLVINQARQQ-----TKDKRRIFVTIRVSPSQYP 496

Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                 +T  DI++  + + +L  A K+A        +    V+HE+  PL+ I   S  
Sbjct: 497 GQQVLLVTTSDITKRLEAEQQLIQASKMAT-----LGEMATGVAHELNQPLSVIKTASTF 551

Query: 610 IKN--QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
                 +  P+        A  ID   +    I+N + +       K      PV ++  
Sbjct: 552 FVRKIDKNEPIAPETLASMAREIDGHVDRATKIINHMREF----GHKSEHKLYPVQVNTV 607

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF-------TP 720
           +  A  +       ++I I  +    +P I AD   ++Q+ +N+L NA           P
Sbjct: 608 LQRAFEIFSQQLKLRQIEISWNLETALPHIQADPDRLEQVFINLLINARDAIETRHASAP 667

Query: 721 SGGQIIISTTHT-SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
              +  I+     ++++V + + D+G+G+   + +K  +PF          G+GTGLGL 
Sbjct: 668 EKAEKRITLASRFADDQVQVCITDSGIGIAPGDRDKIFEPFYTTK----EVGKGTGLGLS 723

Query: 780 LAKAMVDANMGKFYIFST-PAKGTLIEIIFPLYDTSH 815
           ++  ++    G+  +FS  P  G    + FP + TS 
Sbjct: 724 ISYGIIQECGGRITVFSHGPGHGATFSLHFPPHPTSA 760


>gi|87306837|ref|ZP_01088983.1| PAS sensor signal transduction histidine kinase [Blastopirellula
            marina DSM 3645]
 gi|87290210|gb|EAQ82098.1| PAS sensor signal transduction histidine kinase [Blastopirellula
            marina DSM 3645]
          Length = 1088

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 110/748 (14%), Positives = 253/748 (33%), Gaps = 51/748 (6%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI-GDLLKRQNTWYGKT 147
            +DA+  +  +++E  +++G    +++ +   DV      D    +   ++   +T   + 
Sbjct: 361  VDANAQIINVNDEACRSLGYTREELLQLHSDDVEVKWKRDQIVDLHTTIVDNTSTAPLQG 420

Query: 148  TLWPIEGTNLYVPIDL-----AALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
                 +GT   V + +        P++             IV           + +R   
Sbjct: 421  RHRRKDGTEFPVEVRIGRFVENGQPLF-----------IAIVRNVEQRLLHEEMLRREKA 469

Query: 203  KFSHLHEIK-KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL------- 254
                + +      + V+      ++ +     L + ++ +   E    + D+        
Sbjct: 470  MLERIMQASVAAITIVDAHDATRYANRRAIELLALTSEANVFQEPTWLRFDLSGKPLDKD 529

Query: 255  KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN----SKESFEYLSHRNHPS 310
             T    +  +       +        ++         LQ+                +   
Sbjct: 530  DTAYAIVKRTNAPVSGVRYILERAPGDRRVLHINGAPLQDEHGEFDGAVLVIDDVTDDYE 589

Query: 311  LSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
                    E+     +       + +    N F+ +     L       +      +   
Sbjct: 590  AERALKASEDRFQLAISGAQQGIWEWEILENRFFWSDRMFELFGLPPGSEAPSRASMRER 649

Query: 370  LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
            L    L+   A+    L R+      A  R    +                 N+  E + 
Sbjct: 650  LHPEDLTRVEAMFGKFLARA--GKFDAECRF---RVESGEYRWFRMSGDGVWNEEGEAVR 704

Query: 430  QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
              G   +    +  +R +     +  +I EA  +G  I   +G ++  N    +L GY  
Sbjct: 705  LAGAMADITARKETERIVRENEERYRAIFEAAVNGFFIYALDGTLVDVNPTACRLHGYTR 764

Query: 490  EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
            ++++      F+  ++  V   +L  I         E   +G  K   +    +I     
Sbjct: 765  DEMMEMKPLDFIHPDSHPVFQDFLETI---GQGNRFESGAIGVRKGGGVFYAHVIGVPYY 821

Query: 550  FSSCYSL--TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
                     T+ D++E +    +        E +++    F   VSH++++PL  I GF 
Sbjct: 822  VGGRTLALSTVVDVTESRLAIKERETLITTLEAKNTELERFTYTVSHDLKSPLITIKGFL 881

Query: 608  EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
              +          P   E    I  +   + D+++DLL++S+I  G++      V   + 
Sbjct: 882  GALAQD-IDRSDMPAVEEDMQIISDAAEKMKDLLDDLLELSRI--GRVCNPSGFVDGRQM 938

Query: 668  VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG-QII 726
            +   ++ +     EK++ I  S  ++  +   D   ++++  N++ NAI +   G  ++ 
Sbjct: 939  IDAVLTFLAGTIAEKQVNISVSCDDS--QFFGDRVRLQEVLQNLVENAIKYAEVGDPRVT 996

Query: 727  ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
            I  +   +      VRD G G+  +  +K    F ++        +GTG+GL +AK +++
Sbjct: 997  IQLSSDKDNTTC-WVRDNGPGIPAHFRDKIFGLFEKLDP----HSDGTGIGLAIAKRIIE 1051

Query: 787  ANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
             + G+ ++ + P KG+      P   +S
Sbjct: 1052 FHQGEIWVEANPVKGSCFCFRIPRDPSS 1079


>gi|164686355|ref|ZP_02210385.1| hypothetical protein CLOBAR_02793 [Clostridium bartlettii DSM
           16795]
 gi|164601957|gb|EDQ95422.1| hypothetical protein CLOBAR_02793 [Clostridium bartlettii DSM
           16795]
          Length = 433

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 90/372 (24%), Positives = 171/372 (45%), Gaps = 30/372 (8%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE-DILRKPFTVFLEQ 503
            ++E + +QL SI+++ S GI  I+ +G IL  N    ++    +E ++    F   +  
Sbjct: 83  EEVEYKHLQLTSIVKSVSHGILAIDIKGKILLINDIAKEMLKCDIETNLEGINFKFVVGD 142

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMH 559
                +     + +     + +E     + K+  +  ++I    L  S        + + 
Sbjct: 143 ---KKILETFQKYVGSTQNEVIE----LNLKDNLVYRIKIDPVYLQDSKHAIIGSIINIE 195

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           DI+E  + +              + + DF+A VSHE++TPLT+I GF E +K      + 
Sbjct: 196 DITELVKLE--------------NMRKDFVANVSHELKTPLTSITGFVETLK--INDDID 239

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
                 + + I++  N +  ++ D+L +S IE+G+ +L +E V L +   E   + +  A
Sbjct: 240 KNTRNHFLDIIEKESNRLKGLIEDILLLSSIENGQ-DLSYEKVKLFDVFKEVCEITEYIA 298

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-VI 738
           + K I I  +F +    I     ++KQI LN++ N I +TP  G I +   +  N + +I
Sbjct: 299 SSKNITISYNFEDEDVCIYGFRDNIKQIFLNLIDNGIKYTPKDGHIEVVQHYDENRQNII 358

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           L  +D G+G+    L +  + F ++  ++     GTGLGL + K MV +  G   + S  
Sbjct: 359 LEFKDNGIGIPKESLNRIFERFYRVDKARSRDIGGTGLGLAITKHMVKSLGGNITVESIL 418

Query: 799 AKGTLIEIIFPL 810
             G+   +  P+
Sbjct: 419 GIGSDFIVTIPV 430


>gi|222147058|ref|YP_002548015.1| two component sensor kinase [Agrobacterium vitis S4]
 gi|221734048|gb|ACM35011.1| two component sensor kinase [Agrobacterium vitis S4]
          Length = 911

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 128/722 (17%), Positives = 260/722 (36%), Gaps = 38/722 (5%)

Query: 107 GNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNT--WYGKTTLWPIEGTNLYVPIDLA 164
           G    + +G    +             G  +K  +                +  + ++  
Sbjct: 198 GETKPEQLGQLPVETGAPQTEGDFLAFGRWMKPGSAADLDNAIEKLRFNAQSFDLIVETY 257

Query: 165 ALPIYSRNREFSGFRGFGIV-------HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSV 217
              +       SG R F                   +       + F  L E  +     
Sbjct: 258 RDEVLEVQGRVSGGRAFARFVALNNLRAELAELKIEKTRLSTAIETFESLLESVEQPVWQ 317

Query: 218 EKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHT 277
              +  +             + V +LT   A ++               +  P      T
Sbjct: 318 RDSEGRLVWVNQA-----YSDAVEALTPDQAIQEGREILNTITREKIRATLTPVSPYHDT 372

Query: 278 INLNQYTKKQYFGTLQNNSKESFEYLSH--RNHPSLSAYFDEGENLTPETVDKCPIPFFV 335
           ++   +  + +F  +   + +    ++       +L            ET+D    P  +
Sbjct: 373 VSTVVHGNRTFFSVVDTKTPKGSCGMAIDVSREEALREELSRTLKSHAETLDHLATPVAI 432

Query: 336 YSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394
           +     L + N +F  L     +  +E     + LLD  + +     +       + T  
Sbjct: 433 FDGERRLQFYNQAFQQLWDL-DLAFLESRPDHAELLDRLRSAGKLPEQLSWKAWKENTLS 491

Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
              +         +    +  +P  +  +   +    G      +    +  +E     L
Sbjct: 492 VYRSI--------DTQTVLWHLPNGQTLRVIASAHPQGGATWVFENLTEQVDLETRYNTL 543

Query: 455 CSI----LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
             +    ++  S+G+A+   +G I  +N A   L+G              +E+       
Sbjct: 544 VRVQGETIDHLSEGVAVFGPDGRIRLSNPAFRALWGITETQAAPGTHIRAIEEACALSYE 603

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLS---LRIIIKKLPFSSCYSLTMHDISEWKQE 567
                     +  + E     S    +L+S   L   +  LP +    LT  +I++  + 
Sbjct: 604 KPDGWRAFGKMITSFEDERPSSQGTIELMSGLVLDYAVIPLPNAQ-TMLTFVNITDSVRA 662

Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
           +  L    +   K    K+DF+  +S+E+R+PLT IIGF++++K+   GPL N R  EY 
Sbjct: 663 ERALLEKNEALRKADELKNDFVQHISYELRSPLTNIIGFTDLLKSSAIGPL-NERQGEYV 721

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
           ++I  S  ++L IVND+LD++ +++G M L +  + L + + +    +     E  + + 
Sbjct: 722 DHISTSSAVLLTIVNDILDLATVDAGIMRLTYSDIDLTDLLDDVSMQMTDRLQEGGVTLE 781

Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747
               +++  I+AD + +KQI + I++NA++F+P G ++++       + V   V DTG G
Sbjct: 782 ILAPSHLGDIVADQQRLKQILIKIITNAVNFSPEGAKVVLKCWREDADFV-FSVSDTGCG 840

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           +    L    K F    N++  +  G GLGL + ++ V  + G   I S P +GT +   
Sbjct: 841 IPEDMLPSVFKRFS--SNAKGGKRTGAGLGLSIVESFVHLHNGTVSINSVPNQGTTVLCR 898

Query: 808 FP 809
            P
Sbjct: 899 IP 900



 Score = 58.1 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 43/380 (11%), Positives = 98/380 (25%), Gaps = 30/380 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            W  D+ G L  +++     +             ++ + +  +    I   L   + ++ 
Sbjct: 315 VWQRDSEGRLVWVNQAYSDAVEALTPDQAIQEGREILNTITREK---IRATLTPVSPYHD 371

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
            T    + G   +  +     P         G  G  I  V+R +     L + L     
Sbjct: 372 -TVSTVVHGNRTFFSVVDTKTP--------KGSCGMAI-DVSREEALREELSRTLKSHAE 421

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK--YPLLT 263
            L  +    +  + E+   F  Q+      +          +A   D L++       L+
Sbjct: 422 TLDHLATPVAIFDGERRLQFYNQAFQQLWDLDLAFLESRPDHAELLDRLRSAGKLPEQLS 481

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNN-------SKESFEYLSHRNHPSLSAYFD 316
            +         + +I+          G               ++ + +      L   ++
Sbjct: 482 WKAWKENTLSVYRSIDTQTVLWHLPNGQTLRVIASAHPQGGATWVFENLTEQVDLETRYN 541

Query: 317 EGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
               +  ET+D       V+   G +  +NP+F  L            G     ++    
Sbjct: 542 TLVRVQGETIDHLSEGVAVFGPDGRIRLSNPAFRALWGITETQA--APGTHIRAIEEACA 599

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
                      +    T                + L + +      N             
Sbjct: 600 LSYEKPDGWRAFGKMITSFEDERPSSQGTIELMSGLVLDYAVIPLPNAQ-----TMLTFV 654

Query: 436 EDVDTRINKRKMEIEVMQLC 455
              D+   +R +  +   L 
Sbjct: 655 NITDSVRAERALLEKNEALR 674


>gi|302058747|ref|ZP_07250288.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. tomato K40]
 gi|302131708|ref|ZP_07257698.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. tomato NCPPB 1108]
          Length = 1202

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 94/472 (19%), Positives = 180/472 (38%), Gaps = 14/472 (2%)

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411
                   I+    L  +L+        A    +  +   + +          W R    
Sbjct: 475 WSPDRFSVIKTQPELLGILNKALEEFPVAELRSIRLKWLGSSLP-----QPSLWGRIPPW 529

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471
               +              + ++ +       + ++  ++    ++L+   + I + + +
Sbjct: 530 VFWVVALALLTGLVSLAWSSRLKVQIRQRLKAECQLNDQLAFKHALLDGIPNPIYVRDLK 589

Query: 472 GIILSTNRAVSKLFGYPVEDILRKPF--TVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
           G ++S NR+  +  G   E +  +       + +     M+     +L        ++  
Sbjct: 590 GRLISCNRSYEQSLGVSFEQMNGRRLLDVEVIPRPLAEQMHADYLALLENHQPVFSDRTI 649

Query: 530 LGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
             S K   +    +                 DI+E K  + +L  A ++A + +  KS F
Sbjct: 650 ELSGKRMNVWQWTVPFFAADGQLQGLLGGWIDITERKLLEQQLEQAVRLAAQANEAKSVF 709

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
           LA +SHEIRTP+ AIIG  E+   Q       P          RS   ++ ++ + LD++
Sbjct: 710 LASMSHEIRTPMGAIIGLLELECEQALRRGEAPTQG--LQVAHRSATELVALIGESLDLA 767

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQI 707
           +IE+G M L      L       ++L    A EK + +R   A         D   ++Q+
Sbjct: 768 RIEAGGMQLSLVVTPLQTFFEGVLALFSAQAREKGLELRLELAEQARGDYWLDPLRLRQV 827

Query: 708 ALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764
             N+L NA+ FT  G    ++ +S        V + + D+GVG+     ++  +PF Q  
Sbjct: 828 VHNVLGNALKFTRQGAVVVKVEVSDDPPDASRVRIGIMDSGVGIEPARQQQIFQPFTQAA 887

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           +    R  G+GLGL + + +V+   G   + S P KGT + +  PL   + P
Sbjct: 888 DDTAARYGGSGLGLSITRQLVELMKGDISLHSEPGKGTRVTVDVPLARVTEP 939


>gi|149183788|ref|ZP_01862190.1| two-component hybrid sensor and regulator [Bacillus sp. SG-1]
 gi|148848506|gb|EDL62754.1| two-component hybrid sensor and regulator [Bacillus sp. SG-1]
          Length = 941

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 79/360 (21%), Positives = 166/360 (46%), Gaps = 27/360 (7%)

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPV-EDILRKPFTVFLEQ-----NTPSVMN 510
           IL    +GI +++  G I+  N   S ++        + K F  +          P  + 
Sbjct: 465 ILNTIHEGIQLLDTNGKIIHINETFSSIYQSDHLNQYIDKSFLEWFNDVSDIVEEPVELY 524

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII-KKLPFSSCYSLTMHDISEWKQEKN 569
           ++  E+L+ ++    +        + +++ +      +    + + L   D +       
Sbjct: 525 NFANELLTNEINAPNQAQYKLINGQPRMIQVYAEPLYRNETLTGWILVHRDFT------- 577

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
                     +    K++ ++ VSHE+RTPL +++G++E++ N+   P    R  +Y N 
Sbjct: 578 -------KEYEADQMKNELVSTVSHELRTPLASVLGYTELLINRELKP---ERQKKYLNT 627

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I +  N +  ++ND LD+ ++ESGK     +  SL   + E I  +++  +   I   + 
Sbjct: 628 IYQEANRLTVLINDFLDVQRMESGKQTYEKKYESLTPLLKEVIEGIKINTSIHDIQFVSD 687

Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749
             ++   +L D   + Q+  N++ NA+ ++P+GG I I   H++ +E+ + + D G+G+ 
Sbjct: 688 ADDD--MVLGDRDKLLQVFQNLIQNAVKYSPAGGNITIKL-HSAPKELHVSIIDEGLGVP 744

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
              +      F ++ NS + +  GTGLGL +AK ++ A+ G   + S   +G+   +I P
Sbjct: 745 EEAMPNLFTKFFRVDNSDRRKIGGTGLGLAIAKEIIKAHEGDIVLSSKLGQGSTFTVILP 804


>gi|307626243|gb|ADN70547.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli UM146]
          Length = 949

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 98/427 (22%), Positives = 172/427 (40%), Gaps = 35/427 (8%)

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
           +     L  I+      L +  I                 E        +      E  Q
Sbjct: 303 VPVDKVLERIRM-----LILNAILLNVLAGAALFTLARMYERRIFIPAESDALRLEEHEQ 357

Query: 454 L-CSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
               I+ +   GI I+   +G+ + +N            +  ++                
Sbjct: 358 FNRKIVASAPVGICILRTADGVNILSNELAHTYLNMLTHEDRQR---------------- 401

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571
            LT+I+       ++      T     L +  +  +    +     + D+S   + +  L
Sbjct: 402 -LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSSRVKMEESL 456

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
               + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R       ++
Sbjct: 457 QEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR---LVTAMN 512

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
            S +L+L I++D+LD SKIES ++ +     S  E ++   +        K++ +     
Sbjct: 513 NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFIE 572

Query: 692 NNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
            ++P  +  D   ++Q+  N+LSNAI FT +G  I++       + + +RVRDTGVG+  
Sbjct: 573 PDVPVALNGDPMRLQQVISNLLSNAIKFTDTG-CIVLHVR-ADGDYLSIRVRDTGVGIPA 630

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+   +  PL
Sbjct: 631 KEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIPL 690

Query: 811 YDTSHPH 817
           Y   +P 
Sbjct: 691 YGAQYPQ 697


>gi|315500524|ref|YP_004089326.1| multi-sensor signal transduction histidine kinase [Asticcacaulis
           excentricus CB 48]
 gi|315418536|gb|ADU15175.1| multi-sensor signal transduction histidine kinase [Asticcacaulis
           excentricus CB 48]
          Length = 644

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 106/624 (16%), Positives = 224/624 (35%), Gaps = 36/624 (5%)

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
             +++                + + + ++ +      +  + +   E Y   +  L    
Sbjct: 43  HAEEQAEDDVRRAFAVQRDTYQVHALLAEAAAGVRGYVLTRQARFLEPYRKAEADLPPTF 102

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
             L      +   Q      +L    ++     ++          +     +        
Sbjct: 103 NRLDGIIRDAEIRQRFERIRSLAVRKREGLHTIVELADGRPGNGRNTAEIEAALVSNKIV 162

Query: 319 ENLTPETVDKCPI---PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
            +   + +D+  +            +      FL LT   ++  +  +     L     +
Sbjct: 163 LDAMRQEIDRIQVRENALLDQRLRRVEEVRNRFLFLTAISAIVGLLGSLAAVYLFSTGIV 222

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
                ++      +    +                           +          +  
Sbjct: 223 RRIGNLEDNAERLAQGEALN----------------------DLPQDADEIGRLAQRLTR 260

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILR 494
                R  ++ +     +   ++E   D GI  ++ +G++ S N    ++ G+   +IL 
Sbjct: 261 ASALLRGREQALRESEERFRLVIEEVRDYGIFALDPDGVVTSWNLGAERIKGWTAPEILG 320

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554
           + F+ F    T   +   +  +     R T+E       K+       ++I  L   +  
Sbjct: 321 QHFSRFYPDETRDFLPAQM--LQRARDRGTVEDEGWRLRKDGSRFWANVVITSLHDDNGQ 378

Query: 555 SL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
                    D++E ++ +  L  A++ A   +  KS+FL+R SHE+RTP++AI+GF + +
Sbjct: 379 VRGFAKVTRDMTERRRSEEALRMAREDAIAANLAKSEFLSRTSHELRTPMSAILGFGQ-L 437

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
                  L  P +      I ++G  +L ++NDLLDIS IE+G  ++  E V LD+ V E
Sbjct: 438 LELDEETLSTP-HRAAVQQIMKAGRHLLSLINDLLDISSIEAGATDMSIEAVDLDDVVQE 496

Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
             +L         +  +   A       AD R + Q+ LN+++NA  +  +G  + ++  
Sbjct: 497 VHALAAPIVATGGLSFQLDAAEPGLIAQADRRRLIQVLLNLIANAAKYNRTGTCVRLAYG 556

Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
               +++ + V D G G+      +   PF ++    + R EGTGLGL L+K +V++  G
Sbjct: 557 -RKGDDIRIEVEDDGEGIDPSAASRLFTPFDRLGQQSKTRVEGTGLGLALSKRLVESMSG 615

Query: 791 KFYIFSTPAKGTLIEIIFPLYDTS 814
           +      PA+G       P    +
Sbjct: 616 EIGYE-APAQGARFWFTLPAASPT 638



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/317 (9%), Positives = 82/317 (25%), Gaps = 18/317 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID--PNNHIGDLLKRQNTW 143
            + +D  G +   +    +  G  A +++G            D  P   +     R  T 
Sbjct: 291 IFALDPDGVVTSWNLGAERIKGWTAPEILGQHFSRFYPDETRDFLPAQMLQRARDRG-TV 349

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +      +G+  +  + + +L  +  N +  GF    +              +   + 
Sbjct: 350 EDEGWRLRKDGSRFWANVVITSL--HDDNGQVRGFAK--VTRDMTERRRSEEALRMARED 405

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
               +  K    S    +              ++    +L+  +      +      LL+
Sbjct: 406 AIAANLAKSEFLSRTSHELRTPMSAILGFGQLLELDEETLSTPHRAAVQQIMKAGRHLLS 465

Query: 264 --------SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
                   S   +         ++L+   ++ +       +     +      P L A  
Sbjct: 466 LINDLLDISSIEAGATDMSIEAVDLDDVVQEVHALAAPIVATGGLSFQLDAAEPGLIAQA 525

Query: 316 DEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
           D    L    ++           G       ++        ++  +   G+     +   
Sbjct: 526 D-RRRLIQVLLNLIANAAKYNRTGTCVRL--AYGRKGDDIRIEVEDDGEGIDPSAASRLF 582

Query: 376 SDNNAIKPVMLYRSDRT 392
           +  + +      R + T
Sbjct: 583 TPFDRLGQQSKTRVEGT 599


>gi|259907005|ref|YP_002647361.1| aerobic respiration control sensor protein ArcB [Erwinia pyrifoliae
           Ep1/96]
 gi|224962627|emb|CAX54082.1| Aerobic respiration control sensor protein ArcB [Erwinia pyrifoliae
           Ep1/96]
 gi|283476800|emb|CAY72638.1| aerobic respiration sensor-response protein [Erwinia pyrifoliae DSM
           12163]
          Length = 779

 Score =  305 bits (780), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 85/437 (19%), Positives = 185/437 (42%), Gaps = 19/437 (4%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  + V L             L+       N   +     ++     E +       +
Sbjct: 81  EESRQRLVRLVDKLEEMRKRDLELNQQMQ--GNITRLNQEIADRIKAEEERLQVMARLKD 138

Query: 437 DVDTRINKR-KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
           ++  R   + ++E +   L S L+A+ D +   N +      NRA+  L G   + ++  
Sbjct: 139 EMSRREEAQIELEQQSSFLRSFLDASPDLVFYRNSDRQFSGCNRAMELLTGKSEKQLIGL 198

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSC 553
                 + +  + +     ++   ++  T E+        +    +R +    ++   S 
Sbjct: 199 SPKEVYDDDAATKVLETDEKVFHHNVSLTYEQWLQYPDGRKACFEIRKVPYYDRVGKRSG 258

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
                 DI+E K+ ++ L +        S  K+ F++ +SHE+RTPL  I+G S ++ + 
Sbjct: 259 LMGFGRDITERKRYQDALEN-------ASREKTTFISTISHELRTPLNGIVGLSRILLDT 311

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
                 +   ++Y   I  S   + +I ND++++ K+E  K+ L  +P+     +++  +
Sbjct: 312 HL----DQEQLKYLKTIHVSAITLGNIFNDVIEMDKMERRKVQLDTQPMDFTGFLADLEN 367

Query: 674 LVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
           +  L    K +         +P  ILAD   ++QI  N++ NA+ FT  G +I++   + 
Sbjct: 368 ISGLLVEPKGLKFVLETQPPLPHKILADGTRLRQILWNLIGNAVKFTRQG-EIVVRVGYQ 426

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMGK 791
           S E +   V+D+G+G+   E +K    + Q+ + +  +   GTG+GL +++ +  +  G 
Sbjct: 427 SEECLRFDVQDSGIGIPQDEQDKIFAMYYQVKDRRGGKPATGTGIGLAVSRRLAQSMGGD 486

Query: 792 FYIFSTPAKGTLIEIIF 808
             +   P KG+   +  
Sbjct: 487 ISVSGAPGKGSCFTLTL 503


>gi|37523131|ref|NP_926508.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
            7421]
 gi|35214134|dbj|BAC91503.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
            7421]
          Length = 1225

 Score =  305 bits (780), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 97/632 (15%), Positives = 213/632 (33%), Gaps = 23/632 (3%)

Query: 189  VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA 248
                P A  +     F  +  +                    P   R++ +++ + +   
Sbjct: 609  AFKVPPADERYFLVLFETMDPVMPAAPEARHRHDSDQRIDPEPEISRLRQELTIVRQELV 668

Query: 249  HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
            H    L++       + +S     E+  + N    +  +   T +   + + E L   N 
Sbjct: 669  HTQAYLQSIIEEQEATNQSLTTANEEILSSNEELQSTNEELQTAKEEIQSANEELRTTNE 728

Query: 309  PSLSAYFDEGENLTPETVDKCPIPF---FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365
               S   +  +           +      + +   +    P+   L    + D       
Sbjct: 729  ELQSRNLEARQVNNDLLNLLSNVNIPILMLTNDLRIRRFTPAAQRLFNLIATDVGRSLSD 788

Query: 366  LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
            +     AP L ++       L   +R                     +   P+   +   
Sbjct: 789  IRLNFHAPDLEESLLEVIDTLSPKEREVQDLE----------GYWYLLRIRPYRTVDHQI 838

Query: 426  ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
            +         +    + + + +E   +   SI+E     + +++ +  + + NRA  + F
Sbjct: 839  D--GVVLALVDIDALKNSAQLLEAARIYAESIVETVRGPLLVLDSDLRVRTANRAFYQTF 896

Query: 486  GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE-EKLLSLRII 544
                     +                 + E L L   Q L+       +   + + L   
Sbjct: 897  QTVPAQTEGQRLFELAGGQWDIPRLRLMLENLLLHNAQLLDYEVEHDFENVGRRVMLLNA 956

Query: 545  --IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
              I          L + DI+E K+ +     A +   + +  KS  +A  SHE RTPL+ 
Sbjct: 957  QEILAPEQDRLILLALEDITEQKRTQQSQQMALQKEYELNELKSRLIAMTSHEFRTPLST 1016

Query: 603  IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
            II  ++++ +         R  +    I+R+   + D+++ +L I + E  ++ +   P+
Sbjct: 1017 IILSTQLLSSDSPHQSAQKRLKQQ-QRIERAIEQMTDLLDGILSIGQAEIDQVQIRRVPL 1075

Query: 663  SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
             L+    + +  +Q  A           A        D   ++QI  N+L+NA+ ++   
Sbjct: 1076 DLESFCRQLVEEMQA-APGGAHRPAFESAGQCRGANLDAVMLRQILSNLLTNALKYSAPD 1134

Query: 723  GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
              + +        + +  V D G+G+   + E+  +PF +  N       G+GLGL + +
Sbjct: 1135 STVRLQLACRD-GQAVFTVVDEGIGIAVEDQERLFEPFYRGRNVAN--IPGSGLGLAIVR 1191

Query: 783  AMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
             +V+   G+    S P +GT   +  PL + +
Sbjct: 1192 RLVELLKGRLAFESRPQQGTTFTVALPLEEPA 1223


>gi|148262352|ref|YP_001229058.1| multi-sensor hybrid histidine kinase [Geobacter uraniireducens Rf4]
 gi|146395852|gb|ABQ24485.1| multi-sensor hybrid histidine kinase [Geobacter uraniireducens Rf4]
          Length = 885

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 94/545 (17%), Positives = 190/545 (34%), Gaps = 52/545 (9%)

Query: 286 KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY-A 344
           ++     ++        L               ++  P    +  IP      G   Y A
Sbjct: 228 RRRVTGPRDEGAFVDVGLDGVKRLLAFKRLRLHQDEQPYLYIRVSIPEKAALAGVKKYIA 287

Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAP-KLSDNNAIKPVMLYRSDRTCIAASARLHTI 403
           N + + +        +  A  ++ LL     +S    +        +    A +     +
Sbjct: 288 NSAAIFI------AALLSALVVTRLLAGRYLVSPIEQLAEASQAVKNGDLSARTG----L 337

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
            ++ +    +              +          +  + +  ++    +  +I +  SD
Sbjct: 338 SYSGDEISFLAQSFDAMTESLDARLR---------EREVAEALLKASEEKFHAIFDHMSD 388

Query: 464 GIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522
            I I +   G IL  N+A+  ++GY  ++          +  TP      +  +      
Sbjct: 389 AILIHDMATGAILDVNQAMCGMYGYSHDEACAIDVEAISQGATPYTQKEAMAWMELAANG 448

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKK--LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
           +      L   ++  L  + + +++  +       +   DISE K  +++     +   +
Sbjct: 449 EPQLFEWLCKHRDGHLFWVEVSMRRASIGGIERLIVLARDISERKAAEDEKKSLMEQLNQ 508

Query: 581 ESSHKS--DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
               +S       ++H+    LT IIGF+++ + +      N   +E    I R+     
Sbjct: 509 AQRMESVGRLAGGIAHDFNNLLTPIIGFADIARRE---APENSPTVEKMERILRAAFRAK 565

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
           ++V  LL   +    K  L  +   L+  VS    +++     + I IR      +  I 
Sbjct: 566 ELVQQLLSFGR----KQLLDMKITDLNTVVSSFAEILRRTI-RESIDIRLRLTPELDGIC 620

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTT--------------HTSNEEVILRVRDT 744
           AD   ++QI +N+L NA       G I + T                     V+L V D+
Sbjct: 621 ADKTHIEQILMNLLVNAQDAIDGKGIISVETAPVVLDEEYARHHANVIPGHYVMLAVSDS 680

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G GM     +   +PF     +    GEGTGLGL     +V  + G  +++S P +GT+ 
Sbjct: 681 GCGMDRETQDHIFEPFFTTKKA----GEGTGLGLATVYGIVKQHGGNVWVYSEPGQGTVF 736

Query: 805 EIIFP 809
           ++ FP
Sbjct: 737 KLYFP 741



 Score = 58.1 bits (139), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 28/290 (9%), Positives = 63/290 (21%), Gaps = 14/290 (4%)

Query: 170 SRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS 229
              R  +G R  G      V  D         +   H  E    +  V   +    +   
Sbjct: 226 DLRRRVTGPRDEGAF--VDVGLDGVKRLLAFKRLRLHQDEQPYLYIRVSIPEKAALAGVK 283

Query: 230 PPPHLRMKNKVSSLTEYYAHKDDVLKT-EKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288
                     +++L         +       P+    E+S   +    +           
Sbjct: 284 KYIANSAAIFIAALLSALVVTRLLAGRYLVSPIEQLAEASQAVKNGDLSARTGLSYSGDE 343

Query: 289 FGTLQNNSKESFEYLSHRNHPS--LSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYA 344
              L  +     E L  R        A     E       D       ++    G +   
Sbjct: 344 ISFLAQSFDAMTESLDARLREREVAEALLKASEEKFHAIFDHMSDAILIHDMATGAILDV 403

Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
           N +   +  Y   +    A  +  +               M   ++        +L    
Sbjct: 404 NQAMCGMYGYSHDEA--CAIDVEAISQGATPYTQKEAMAWMELAANGEP-----QLFEWL 456

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
               +          +            +  +  + +  + + +  + QL
Sbjct: 457 CKHRDGHLFWVEVSMRRASIGGIERLIVLARDISERKAAEDEKKSLMEQL 506



 Score = 46.2 bits (108), Expect = 0.026,   Method: Composition-based stats.
 Identities = 20/238 (8%), Positives = 58/238 (24%), Gaps = 20/238 (8%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDV---SDILHIDPNNHIGDLLKRQNTWYGKT 147
           A G + ++++ +    G    +   + +  +   +            +L         + 
Sbjct: 396 ATGAILDVNQAMCGMYGYSHDEACAIDVEAISQGATPYTQKEAMAWMELAANGEPQLFEW 455

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                +G   +V + +    I    R         +              K L ++ +  
Sbjct: 456 LCKHRDGHLFWVEVSMRRASIGGIERLIV------LARDISERKAAEDEKKSLMEQLNQA 509

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
             ++          +D  +  +P         +    +    +          +     +
Sbjct: 510 QRMESVGRLAGGIAHDFNNLLTP---------IIGFADIARREAPENSPTVEKMERILRA 560

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
           +   +E    +       KQ       +        +     ++    D    LTPE 
Sbjct: 561 AFRAKELVQQLLSFGR--KQLLDMKITDLNTVVSSFAEILRRTIRESIDIRLRLTPEL 616


>gi|194364516|ref|YP_002027126.1| integral membrane sensor hybrid histidine kinase [Stenotrophomonas
           maltophilia R551-3]
 gi|194347320|gb|ACF50443.1| integral membrane sensor hybrid histidine kinase [Stenotrophomonas
           maltophilia R551-3]
          Length = 925

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 116/649 (17%), Positives = 214/649 (32%), Gaps = 55/649 (8%)

Query: 191 NDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH--------LRMKNKVSS 242
           +   AL + L              ++ E E         P            R +N + +
Sbjct: 68  DQREALLRYLGDSVVKGAPA-AQTAAGEGEGVRRIPLDGPGGQPGQCMLLSARAENTLQA 126

Query: 243 L-TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301
           L T       D         +  E + LP          +       +      +  +  
Sbjct: 127 LQTRLLLIDADGAHGLAGAAIDVELAQLPSLRALQARGGSLDGADPVYWMRPGETGVALA 186

Query: 302 -YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDI 360
             +     P         +      +D   I  +         A  S          D +
Sbjct: 187 QPVQAGPRPMQWLLLLLDDAAAAGMIDGQGIGGYALLDREGSPALSSQAPRLDSAGWDTL 246

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
                                  ++    +        RL            +       
Sbjct: 247 RQRQ--DDSFGTLWSGGLPRGVALVKSVGNDG-----WRLVYHLPPPLLLGDLAVPLLVC 299

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC------SILEATSDGIAIINREGI- 473
                       +    VD ++ +  ++     L       ++++    GI ++ R    
Sbjct: 300 TLLLLLAGVALRLLRHRVDRQLIQPALQQHRRLLENLDFSSTVIDMAPAGICVLRRSDRH 359

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
           +L  N+ +    G                            +                + 
Sbjct: 360 LLLCNQVLRDWLG--------------------EEGADSDWQAPWRGHAGERGHGLEFTA 399

Query: 534 KEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
           ++ + L +     +           HDIS  +Q +  LS A++ A+  +  KS FLA +S
Sbjct: 400 RDGRQLQVLHAACRYQGDDVLLCVFHDISRHRQAQAALSSARQAADAANQAKSAFLATMS 459

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HEIRTPL  ++G  E++ +       +PR  +Y   I+ S +++L +++D+LD+SKIESG
Sbjct: 460 HEIRTPLYGVLGTLELLGHTTL----DPRQSQYLRTIESSSSVLLQLISDVLDVSKIESG 515

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNIL 712
           +++L     S  E     +      A  K + I       +P R+L D   ++Q+  N+L
Sbjct: 516 QLSLEPAAFSPRELTESVLRSFAASATCKGLQILVCTDPRLPTRVLGDADRIRQVLGNLL 575

Query: 713 SNAIHFTPSGGQI-IIS-TTHTSNEEVIL-RVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
           SNAI FT  G  +  +      +   V++ +V DTGVG+   E  +  +PF Q+  +   
Sbjct: 576 SNAIKFTEHGRVVLRVRQVQREAESSVLVWQVTDTGVGIAAEEQARLFEPFRQVRGAAS- 634

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
             +GTGLGL ++  +V    G+  + S P  G+   +  PL   +   D
Sbjct: 635 -AQGTGLGLSISDRLVRLMSGELQVVSEPGLGSSFSVRLPLPVLAAAED 682


>gi|299541797|ref|ZP_07052120.1| two-component sensor histidine kinase [Lysinibacillus fusiformis
           ZC1]
 gi|298725535|gb|EFI66176.1| two-component sensor histidine kinase [Lysinibacillus fusiformis
           ZC1]
          Length = 621

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 81/370 (21%), Positives = 159/370 (42%), Gaps = 25/370 (6%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +  +   E E  +L S+L   +DG+   +R+G I+  N    +L     +  L +P    
Sbjct: 263 QEAQSTTEAERRKLDSVLSNMTDGVIATDRKGRIILINDPALELLHISRDITLGRPIASV 322

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
           L  +        +    +++L  +                  +I K+  F +     +HD
Sbjct: 323 LGIDQEYSFEDLIHMNDAVNLNFSTADAPYILRAN-----FSVIQKETGFINGLITVLHD 377

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I+E ++ +                + +F++ VSHE+RTPLT +  + E + +   G   +
Sbjct: 378 ITEQEKIEMD--------------RREFVSNVSHELRTPLTTMRSYLEALAD---GAWKD 420

Query: 621 PRYI-EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
                 + N        ++ +VNDLL +S+++S    L+ + V  +   +  I   ++  
Sbjct: 421 ENIAPTFLNVTQTETERMIRLVNDLLQLSRMDSSDYELNKDIVLFNSFFNRIIDRFEMSK 480

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
           ++K +     F      +  D   + Q+  NI+SNAI ++P GG I    T   +  + +
Sbjct: 481 SDK-VQFERLFPETSFYVEIDTDKITQVIDNIISNAIKYSPDGGNIRFGFTGQDD-MLKV 538

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            + D G+G+    + +    F ++  ++     GTGLGL +A+ M++A+ GK +  S   
Sbjct: 539 MISDDGMGIPKENVGRIFDRFYRVDRARARSMGGTGLGLAIAREMIEAHGGKIWAESEEG 598

Query: 800 KGTLIEIIFP 809
           +GT I    P
Sbjct: 599 QGTTIFFTLP 608


>gi|213969064|ref|ZP_03397203.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. tomato T1]
 gi|213926062|gb|EEB59618.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. tomato T1]
          Length = 1213

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 94/472 (19%), Positives = 180/472 (38%), Gaps = 14/472 (2%)

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411
                   I+    L  +L+        A    +  +   + +          W R    
Sbjct: 486 WSPDRFSVIKTQPELLGILNKALEEFPVAELRSIRLKWLGSSLP-----QPSLWGRIPPW 540

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471
               +              + ++ +       + ++  ++    ++L+   + I + + +
Sbjct: 541 VFWVVALALLTGLVSLAWSSRLKVQIRQRLKAECQLNDQLAFKHALLDGIPNPIYVRDLK 600

Query: 472 GIILSTNRAVSKLFGYPVEDILRKPF--TVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
           G ++S NR+  +  G   E +  +       + +     M+     +L        ++  
Sbjct: 601 GRLISCNRSYEQSLGVSFEQMNGRRLLDVEVIPRPLAEQMHADYLALLENHQPVFSDRTI 660

Query: 530 LGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
             S K   +    +                 DI+E K  + +L  A ++A + +  KS F
Sbjct: 661 ELSGKRMNVWQWTVPFFAADGQLQGLLGGWIDITERKLLEQQLEQAVRLAAQANEAKSVF 720

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
           LA +SHEIRTP+ AIIG  E+   Q       P          RS   ++ ++ + LD++
Sbjct: 721 LASMSHEIRTPMGAIIGLLELECEQALRRGEAPTQG--LQVAHRSATELVALIGESLDLA 778

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQI 707
           +IE+G M L      L       ++L    A EK + +R   A         D   ++Q+
Sbjct: 779 RIEAGGMQLSLVVTPLQTFFEGVLALFSAQAREKGLELRLELAEQARGDYWLDPLRLRQV 838

Query: 708 ALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764
             N+L NA+ FT  G    ++ +S        V + + D+GVG+     ++  +PF Q  
Sbjct: 839 VHNVLGNALKFTRQGAVVVKVEVSDDPPDASRVRIGIMDSGVGIEPARQQQIFQPFTQAA 898

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           +    R  G+GLGL + + +V+   G   + S P KGT + +  PL   + P
Sbjct: 899 DDTAARYGGSGLGLSITRQLVELMKGDISLHSEPGKGTRVTVDVPLARVTEP 950


>gi|300724941|ref|YP_003714266.1| hybrid sensory histidine kinase [Xenorhabdus nematophila ATCC
           19061]
 gi|297631483|emb|CBJ92190.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA, regulates respiration and fermentation,
           senses oxidized quinones [Xenorhabdus nematophila ATCC
           19061]
          Length = 777

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 85/394 (21%), Positives = 171/394 (43%), Gaps = 16/394 (4%)

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
            +  +    +  + ++ E       + ++E + + L S L+A+ D +   N +      N
Sbjct: 122 REKAEKAHLLLLDKLKLEMEHREKTQIELEQQSVLLRSFLDASPDLVYYRNEDDEFSGCN 181

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
           RA+  L G   + ++        ++     +     ++   ++  T E+  +     +  
Sbjct: 182 RAMELLTGKSEKQLIGLTPKEVYDKEIAGKVMETDEKVFRHNVSLTYEQWLVYPDGRKAC 241

Query: 539 LSLRIII--KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
             LR +    ++           DI+E K+ ++ L +        S  K+ F++ +SHE+
Sbjct: 242 FELRKVPFYDRVGKRHGLMGFGRDITERKRYQDALEN-------ASRDKTTFISTISHEL 294

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTPL  I+G S ++ +    P        Y   I  S   + +I ND++++ KIE  K+ 
Sbjct: 295 RTPLNGIVGLSRILIDTDVTP----EQCNYLKTIHVSAITLGNIFNDIIELDKIERRKVK 350

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNA 715
           L  +P      +++  ++  L A  K I         +P +I+ D   ++QI  N++SNA
Sbjct: 351 LDNQPTDFTGFIADLENIAGLLAQPKGIKFVMEPEQPLPAKIMTDGTRLRQILWNMMSNA 410

Query: 716 IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ-IPNSQQIRGEGT 774
           + FTP+G +I +       + +   V DTG+G+ + ELEK    + Q   ++      GT
Sbjct: 411 VKFTPNG-KIRVRIWREEGDRLFFEVMDTGIGIPSDELEKIFAMYYQVTDSAGGRPATGT 469

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           G+GL ++K +  +  G   + S    G+   +  
Sbjct: 470 GIGLAVSKRLAQSMGGDITVTSALGHGSCFTLSI 503



 Score = 41.2 bits (95), Expect = 0.72,   Method: Composition-based stats.
 Identities = 26/227 (11%), Positives = 57/227 (25%), Gaps = 16/227 (7%)

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
           V  L E       ++   +         +L  +E+   +N     +++          + 
Sbjct: 77  VEQLEESRQRLSGLVAKLEEMRQRDATLNLQLKENISQLNQEIIEREKAEKAHLLLLDKL 136

Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVD 358
              + H          ++   L    +D  P   +           N +  LLT      
Sbjct: 137 KLEMEH--REKTQIELEQQSVLLRSFLDASPDLVYYRNEDDEFSGCNRAMELLTGKSEKQ 194

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW---NRENSLAMTF 415
            I         L   ++ D      VM   +D      +  L   QW             
Sbjct: 195 LIG--------LTPKEVYDKEIAGKVM--ETDEKVFRHNVSLTYEQWLVYPDGRKACFEL 244

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
                 ++  +     G   +  + +  +  +E       + +   S
Sbjct: 245 RKVPFYDRVGKRHGLMGFGRDITERKRYQDALENASRDKTTFISTIS 291


>gi|225181177|ref|ZP_03734623.1| multi-sensor signal transduction histidine kinase [Dethiobacter
           alkaliphilus AHT 1]
 gi|225168146|gb|EEG76951.1| multi-sensor signal transduction histidine kinase [Dethiobacter
           alkaliphilus AHT 1]
          Length = 603

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 78/412 (18%), Positives = 179/412 (43%), Gaps = 38/412 (9%)

Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465
           + +    +T    ++  +  +       + +         ++  E  ++ +IL   +DGI
Sbjct: 210 HGDFRQRITIHSQDEIGRLGQMFNYLSRQLDATLR-----EISSEKGKVEAILNHMTDGI 264

Query: 466 AIINREGIILSTNRAVSKLFGYPVE-DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
             +NR+G +L  N    +L     E +   +     +           L  IL+   +++
Sbjct: 265 VALNRDGQVLHVNPTAHRLLDLNEESEPTAEVLGQLVAPVD-------LAAILNTGRQES 317

Query: 525 LEKITLGSTKEEKLLSLRII------IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578
             +  +    ++ +++  +       I    F S   + +HD+++ +             
Sbjct: 318 --REIMLQPHQQLIVASYVPFHTQDEITDTEFLSGVLIVLHDVTKER------------- 362

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
            +    + +F+A VSHE+RTPLT +  ++E +             + + + +++    ++
Sbjct: 363 -ELIRIQQEFVANVSHELRTPLTTMKSYTETLLGGAM--YEPETCLSFLSTMEKETERMV 419

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
            +V DLL +S+++  ++    E + L+E VSE ++ +++   E+   +            
Sbjct: 420 RLVKDLLALSQLDYRQVAWRKEKLPLNELVSEVVNELRVKFQEEPRHVTVELPETTVWHC 479

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
            D   +KQ+ +N++ N+  +T   G I I+     + + ++ V D G+G+   ++++   
Sbjct: 480 FDRDKMKQVLINVIQNSFKYTAEHGLIRIALEVAED-QAVIHVADDGIGIPPEDVKRVFD 538

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            F ++  ++     GTGLGL +A+ +V+A+ G   + S P KGT   I  PL
Sbjct: 539 RFYRVDKARSRDFGGTGLGLSIAREIVEAHGGSITVCSEPEKGTQFTISLPL 590


>gi|30261573|ref|NP_843950.1| sensor histidine kinase ResE [Bacillus anthracis str. Ames]
 gi|47777938|ref|YP_018121.2| sensor histidine kinase ResE [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49184404|ref|YP_027656.1| sensor histidine kinase ResE [Bacillus anthracis str. Sterne]
 gi|165872663|ref|ZP_02217293.1| sensor histidine kinase ResE [Bacillus anthracis str. A0488]
 gi|167634330|ref|ZP_02392651.1| sensor histidine kinase ResE [Bacillus anthracis str. A0442]
 gi|167641635|ref|ZP_02399881.1| sensor histidine kinase ResE [Bacillus anthracis str. A0193]
 gi|170689250|ref|ZP_02880446.1| sensor histidine kinase ResE [Bacillus anthracis str. A0465]
 gi|170706277|ref|ZP_02896738.1| sensor histidine kinase ResE [Bacillus anthracis str. A0389]
 gi|177651395|ref|ZP_02934184.1| sensor histidine kinase ResE [Bacillus anthracis str. A0174]
 gi|190568132|ref|ZP_03021042.1| sensor histidine kinase ResE [Bacillus anthracis Tsiankovskii-I]
 gi|227815676|ref|YP_002815685.1| sensor histidine kinase ResE [Bacillus anthracis str. CDC 684]
 gi|229601315|ref|YP_002865983.1| sensor histidine kinase ResE [Bacillus anthracis str. A0248]
 gi|254682359|ref|ZP_05146220.1| sensor histidine kinase ResE [Bacillus anthracis str. CNEVA-9066]
 gi|254733774|ref|ZP_05191488.1| sensor histidine kinase ResE [Bacillus anthracis str. Western North
           America USA6153]
 gi|254740535|ref|ZP_05198226.1| sensor histidine kinase ResE [Bacillus anthracis str. Kruger B]
 gi|254753924|ref|ZP_05205959.1| sensor histidine kinase ResE [Bacillus anthracis str. Vollum]
 gi|254759020|ref|ZP_05211047.1| sensor histidine kinase ResE [Bacillus anthracis str. Australia 94]
 gi|30255427|gb|AAP25436.1| sensor histidine kinase ResE [Bacillus anthracis str. Ames]
 gi|47551643|gb|AAT30596.2| sensor histidine kinase ResE [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49178331|gb|AAT53707.1| sensor histidine kinase ResE [Bacillus anthracis str. Sterne]
 gi|164711607|gb|EDR17154.1| sensor histidine kinase ResE [Bacillus anthracis str. A0488]
 gi|167510428|gb|EDR85828.1| sensor histidine kinase ResE [Bacillus anthracis str. A0193]
 gi|167530218|gb|EDR92944.1| sensor histidine kinase ResE [Bacillus anthracis str. A0442]
 gi|170128811|gb|EDS97677.1| sensor histidine kinase ResE [Bacillus anthracis str. A0389]
 gi|170666805|gb|EDT17572.1| sensor histidine kinase ResE [Bacillus anthracis str. A0465]
 gi|172082673|gb|EDT67736.1| sensor histidine kinase ResE [Bacillus anthracis str. A0174]
 gi|190560866|gb|EDV14841.1| sensor histidine kinase ResE [Bacillus anthracis Tsiankovskii-I]
 gi|227002441|gb|ACP12184.1| sensor histidine kinase ResE [Bacillus anthracis str. CDC 684]
 gi|229265723|gb|ACQ47360.1| sensor histidine kinase ResE [Bacillus anthracis str. A0248]
          Length = 591

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 79/371 (21%), Positives = 154/371 (41%), Gaps = 39/371 (10%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            ++ E  QL SIL + +DG+  +N+EG ++  N           E+       + L +  
Sbjct: 249 ALQQEKEQLASILSSMADGVITLNQEGEVVVINPPAEHFLQVWQEEK-----EIELSKKL 303

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
           PS +      ++  + +Q +         +   + L   +            + D++E +
Sbjct: 304 PSELVELFHLVVESEQQQVVGINLQ----KGNYVVLMTPLYNQTKIRGAVAVLRDMTEER 359

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + +                + DF+A VSHE+RTP+  + G+SE I +            E
Sbjct: 360 RLE--------------KMRQDFIANVSHELRTPMVMLQGYSEAILDDIVQT--KEEINE 403

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           +   I      +  +VN+LLD++++ESG + LH   V +   V +     Q  A +K + 
Sbjct: 404 FVQIIYDESVRLGKLVNELLDLARMESGNVELHIGEVDIHPFVEKIGRKFQGIAKDKEVA 463

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +   F ++I +   D   ++Q+  N++ NAI  T +GG + +     +N  +I  V+D+G
Sbjct: 464 LTVDFKDSIEQYPFDADRMEQVLTNLIDNAIRHTNAGGHVTLVIDTKNNG-LIFEVQDSG 522

Query: 746 VGMTNYELEKAMKPFGQIPNSQQI-------RGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
            G+   ++      F +   ++          G        +AK +V  + GK  + S  
Sbjct: 523 AGIPEEDIPFLFDRFYKADKARTRGKKGGTGLGL------AIAKNIVQGHGGKISVSSVV 576

Query: 799 AKGTLIEIIFP 809
            +GT   +  P
Sbjct: 577 GEGTTFSVYLP 587


>gi|83594772|ref|YP_428524.1| PAS/PAC sensor Signal transduction histidine kinase [Rhodospirillum
           rubrum ATCC 11170]
 gi|83577686|gb|ABC24237.1| PAS/PAC sensor signal transduction histidine kinase [Rhodospirillum
           rubrum ATCC 11170]
          Length = 801

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 118/753 (15%), Positives = 251/753 (33%), Gaps = 53/753 (7%)

Query: 85  FTWNIDAHGYLKEI-SEELPKTI----GNYAF--KMIGMRLCDVSDILHIDPNNHIGDLL 137
           + W +D     +E  S  L   +    G  A   ++IG     V           +  +L
Sbjct: 71  YLWALDGPLRGREFCSRRLAVLLRLPSGVNAELKEIIG-----VFAEGDAQALEGMIAVL 125

Query: 138 KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIV----HVNRVDNDP 193
           +R+   +    L    G  +     +            +       V     V  V    
Sbjct: 126 RREGRGFVLDLLLAASGRRVR---TVGIRANAGDGHALADLLWMRDVTEETRVGDVQGRR 182

Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH--KD 251
               +    +   + +          +   I    +                        
Sbjct: 183 AQALQAERDRLRAVVDALPAPIWTRDDSLAIGDGNTALARALDLGSAGDALTARRELAPG 242

Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
              +  +     S  +  P +  FH +   +    +   T  +        +      + 
Sbjct: 243 ATGQEMRALAARSRAAGRPARARFHAVLDGERKLLEITETPLSEGPLRGHTVGIAQDITP 302

Query: 312 ----SAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGL 366
                +  +       E +++      ++     L + N +F  L   +S D +      
Sbjct: 303 IEEVESRLERETEAHAEVLERLGSAIAIFGGDTRLSFHNAAFASLWGLES-DWLNGEPSY 361

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
              L+  + +                    +  L            +  +P     +   
Sbjct: 362 GDFLERQRENRRLPEVADFPAYKAGELGYFTKLLR-------PREDILHLPDGATLRRVI 414

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSI----LEATSDGIAIINREGIILSTNRAVS 482
                G      +   +   +E    QL ++    ++   + +A+    G +  +N A S
Sbjct: 415 APHPLGGLITTFEDVTDSLALERSYNQLTAVQRETIDHLHEAVAVFGANGRLRLSNPAFS 474

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL---DLRQTLEKITLGSTKEEKLL 539
           +L+     D   +   +  +     + +                   +      ++ + L
Sbjct: 475 QLWSGAGTDSEPQAAALLDDMEAAMIADGAWETFRRRLCVRDESAGPRNGRLVRRDGRHL 534

Query: 540 SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
               +           L++ DI++  + +  LS   +        KS+F+A VS+E+RTP
Sbjct: 535 DYATVPLP---DGGLLLSILDITDRVRVEQALSERTEALRAADMMKSEFIANVSYELRTP 591

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           LT I GFSE++    +G L N R  EYA  I  +   V+ +++++ D+  +++GK+ L  
Sbjct: 592 LTTISGFSEILSGAYYGEL-NTRQREYAEVITETSRQVVRLIDEITDLVSMQAGKLALEL 650

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719
           +   +  A++  ++L +  A  + + +      +   ++AD   +KQI  +++SNAI  T
Sbjct: 651 DAFDIHAALAAVLALGRESARRRGVTLNFDCPPDAGWMVADETRIKQILFHLMSNAITGT 710

Query: 720 PSGGQIIISTTHT---SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
            +GGQ+ ++           ++  V DTG GM      +A + F     ++  R +G GL
Sbjct: 711 DAGGQVTLAVQREDTPDGGTMVFTVADTGRGMDEILQTRAFESF-----AKGPRADGAGL 765

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GL L +  V+ + G   + S P +GT + +  P
Sbjct: 766 GLALVRRFVELHGGAVDLVSVPGEGTTVTVRIP 798


>gi|229825439|ref|ZP_04451508.1| hypothetical protein GCWU000182_00798 [Abiotrophia defectiva ATCC
           49176]
 gi|229790002|gb|EEP26116.1| hypothetical protein GCWU000182_00798 [Abiotrophia defectiva ATCC
           49176]
          Length = 494

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 82/348 (23%), Positives = 152/348 (43%), Gaps = 22/348 (6%)

Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522
           + I +   +G  ++ +    +  GY  ++ + K F                  IL  +  
Sbjct: 22  ELIFVFGEDGRYINCSNKARESLGYLQDEDMGK-FENIFP------------NILLEETS 68

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES 582
                      K E      + I +      + +   D +E +    +L   K+  + E 
Sbjct: 69  LLEHVEADVYRKNETCFPADVKIIRFEDDK-FIVFAIDQTETRNMARELKACKEELKSEL 127

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
            +K++F++ ++HE+RTP+  I G ++ + N           +E    I++    +  I+N
Sbjct: 128 KYKTEFVSNITHELRTPVNGIQGMTKNLLNTELDSF----QLETVGIIEQCCVNMSKIIN 183

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADL 701
           DLLD SK+ES K+ L  +  S  E +++ ++      NEK + +     ++IP+ ++ D 
Sbjct: 184 DLLDFSKMESDKLVLENKAFSFREFLNKVMAFNVTLVNEKGLKLLVHVGDDIPKYLIGDE 243

Query: 702 RSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVI--LRVRDTGVGMTNYELEKAMK 758
             + QI  N++SNA+ FT  G   +  S     ++ V     V DTG+G+    ++K  K
Sbjct: 244 LRLTQIFNNLISNAVKFTTIGHVAVEASLIREEDDFVELFFMVVDTGIGIAKENMDKLFK 303

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
            F Q+  S   R  GTGLGL ++K +V+   G   + S   KG+    
Sbjct: 304 KFSQVDASTTRRFGGTGLGLSISKKLVELMGGDIKVESEVGKGSSFSF 351


>gi|149277835|ref|ZP_01883975.1| sensor for ctr capsule biosynthesis; sensor histidine kinase
           [Pedobacter sp. BAL39]
 gi|149231523|gb|EDM36902.1| sensor for ctr capsule biosynthesis; sensor histidine kinase
           [Pedobacter sp. BAL39]
          Length = 684

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 106/724 (14%), Positives = 244/724 (33%), Gaps = 91/724 (12%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI-GDLLKRQNTWY--GKTTLWP 151
           +   ++ + +  G     +IG  + +    LH  P   I  D+++   T+          
Sbjct: 43  IAFANDAIIRIWGKDRS-VIGKTIEEALPELHDQPFKQIFLDVMRTGITYQSDNMPADLV 101

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
           ++G       D     I +   E      + +++  R         K             
Sbjct: 102 VDGKRQTFYFDFKYRAIKNEAGE-----TYCVMNTARDVTARYLGQKA------------ 144

Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271
                                               A  +   +     L  S E  +  
Sbjct: 145 -----------------------------------IAEAERREQDLNEELAASNEELVAS 169

Query: 272 QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI 331
            E+    N    +  +    + +  +++ + +S  N           E+     +D   +
Sbjct: 170 NEELAASNEELTSLNEELSAMNDELQQATQQVSLLN-----KNLKYSEDNLNFAIDAANL 224

Query: 332 PFFVYSHGNLFYA-NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390
             +      + +A N         +   +I +    + + D  +     AI+  M Y+S 
Sbjct: 225 GTWDLDPSMMSFAGNERLRNWFGLRPYQEIPLDQATNVIFDQDRERVLAAIERAMDYQSG 284

Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450
                    ++ I         +        ++  +    +G   +  +    + ++E  
Sbjct: 285 GLYDIKYTIMNPIT---GIPRKVRAKGKALFDENGQATRFSGTLQDITEEEQTRVELEES 341

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
              L   +EA   G   ++ +   +S +      FG   +D       + +         
Sbjct: 342 RKGLELAMEAARLGAYKLDLKLGKMSCSAQFKHNFGLTEQDKFDFSDMMEVVHADFKQYV 401

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQ 566
             L    ++  +Q           +     +R+        S           DI+E ++
Sbjct: 402 -MLQVEKAIAEKQIYNAEYPILWPDGTEHWVRVSGLPTYNHSGEAVYMMGVSFDITEQRR 460

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
           +                 K+DF+  VSHE++TPLT++ G+ +V+ + +   + +      
Sbjct: 461 D--------------DLRKNDFIGMVSHELKTPLTSLKGYVQVL-HGKASKVKDEFASGM 505

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
            + ++   N +  ++N  L IS++ESGK+ L  E  +LD+ ++E I   ++      I  
Sbjct: 506 LSKVNNQVNKMNAMINGFLSISRLESGKILLVMEEFALDQLIAEVIDENEVLFPVHHIEF 565

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
                     + AD   +  +  N++SNA  ++ +   I I  +    +E I+ V+D+G+
Sbjct: 566 HRC---EGLMLNADRDKIGHVVSNLISNAAKYSSAESVIEIHCSRE-GDEAIVSVKDSGI 621

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+   +  +  + + ++ +       G G+GL L+  +++ + G+ ++ S   KG++   
Sbjct: 622 GIPAEDHGRLFERYYRVES--NNLISGFGIGLYLSAEIIERHHGRIWVESEVGKGSVFHF 679

Query: 807 IFPL 810
             PL
Sbjct: 680 SLPL 683


>gi|148993836|ref|ZP_01823238.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           SP9-BS68]
 gi|168489054|ref|ZP_02713253.1| sensor protein YycG [Streptococcus pneumoniae SP195]
 gi|194398370|ref|YP_002037827.1| histidine kinase [Streptococcus pneumoniae G54]
 gi|147927661|gb|EDK78686.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           SP9-BS68]
 gi|183572355|gb|EDT92883.1| sensor protein YycG [Streptococcus pneumoniae SP195]
 gi|194358037|gb|ACF56485.1| histidine kinase TCS02 [Streptococcus pneumoniae G54]
 gi|332073564|gb|EGI84043.1| sensory box protein [Streptococcus pneumoniae GA17570]
          Length = 449

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 87/376 (23%), Positives = 165/376 (43%), Gaps = 33/376 (8%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           R+ +  +E E  +L SIL   +DG+   NR G I+  N    K  G   ED+L +     
Sbjct: 83  RLTQENLEQESKRLNSILFYMTDGVLATNRRGQIIMINDTAKKQLGLVKEDVLNRSILEL 142

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SL 556
           L+      +   +         Q+ E +        + L+LR+    +   S +      
Sbjct: 143 LKIEENYELRDLI--------TQSPELLLDSQDINGEYLNLRVRFALIRRESGFISGLVA 194

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            +HD +E ++E+ +                 F++ VSHE+RTPLT++  + E +      
Sbjct: 195 VLHDTTEQEKEERERRL--------------FVSNVSHELRTPLTSVKSYLEALDEGALC 240

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV- 675
               P   ++        N ++ +V DLL +S+I++    L  E ++    ++  ++   
Sbjct: 241 ETVAP---DFIKVSLDETNRMMRMVTDLLHLSRIDNATSLLDVELINFTAFITFILNRFD 297

Query: 676 --QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
             +    EK+  +   +  N   +  D   + Q+  NIL+NAI ++P GG+I +    T 
Sbjct: 298 KMKGQEKEKKYELVRDYPINSIWMEIDTDKMTQVVDNILNNAIKYSPDGGKITVRMKTTE 357

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
           ++ + L + D G+G+   +L +    F ++  ++     GTGLGL +AK ++  + G  +
Sbjct: 358 DQMI-LSISDHGLGIPKQDLPRIFDRFYRVDRARSRAQGGTGLGLSIAKEIIKQHKGFIW 416

Query: 794 IFSTPAKGTLIEIIFP 809
             S   KG+   I+ P
Sbjct: 417 AKSEYGKGSTFTIVLP 432


>gi|333016950|gb|EGK36274.1| sensor kinase protein rcsC [Shigella flexneri K-227]
          Length = 880

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 98/427 (22%), Positives = 172/427 (40%), Gaps = 35/427 (8%)

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
           +     L  I+      L +  I                 E        +      E  Q
Sbjct: 234 VPVDKVLERIRM-----LILNAILLNVLAGAALFTLARMYERRIFIPAESDALRLEEHEQ 288

Query: 454 L-CSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
               I+ +   GI I+   +G+ + +N            +  ++                
Sbjct: 289 FNRKIVASAPVGICILRTADGVNILSNELAHTYLNMLTHEDRQR---------------- 332

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571
            LT+I+       ++      T     L +  +  +    +     + D+S   + +  L
Sbjct: 333 -LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSSRVKMEESL 387

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
               + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R       ++
Sbjct: 388 QEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR---LVTAMN 443

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
            S +L+L I++D+LD SKIES ++ +     S  E ++   +        K++ +     
Sbjct: 444 NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFIE 503

Query: 692 NNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
            ++P  +  D   ++Q+  N+LSNAI FT +G  I++       + + +RVRDTGVG+  
Sbjct: 504 PDVPVALNGDPMRLQQVISNLLSNAIKFTDTG-CIVLHVR-ADGDYLSIRVRDTGVGIPA 561

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+   +  PL
Sbjct: 562 KEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIPL 621

Query: 811 YDTSHPH 817
           Y   +P 
Sbjct: 622 YGAQYPQ 628


>gi|219847901|ref|YP_002462334.1| GAF sensor signal transduction histidine kinase [Chloroflexus
           aggregans DSM 9485]
 gi|219542160|gb|ACL23898.1| GAF sensor signal transduction histidine kinase [Chloroflexus
           aggregans DSM 9485]
          Length = 725

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 104/614 (16%), Positives = 218/614 (35%), Gaps = 48/614 (7%)

Query: 222 YDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLN 281
           +++ S        R    V SL    A        +   L         E     T+  +
Sbjct: 129 FELRSDDQSHFAHRTTELVESLKPLLAAAIAQEGVQSSRLPAP--RFAGETPLGITLTPS 186

Query: 282 QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNL 341
              K          + +  E L      +L     E   +     ++  +   +Y     
Sbjct: 187 LRQKIIALNDQLEQTLDLHELLGIVLRRALEGSGAEAGAIALVDHERRELVLHLYEGYAS 246

Query: 342 FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401
             A  +   + + +   DI +AG    +     + D                +   A L 
Sbjct: 247 EQAGAALPKMPRQRWGWDIGLAGQAVQVRRPLLVRDAGRE------PGLPNGMPFLAELA 300

Query: 402 -TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME----IEVMQLCS 456
             I  +      +            E +       E     + +             L  
Sbjct: 301 APISTDERVLAVLILHSRRANTFTEEVLAFIDALRERAGLPLARAMAYQVAYETSYHLGQ 360

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVE------DILRKPFTVFLEQNTPSVMN 510
           +  +   G+A+++  G ++  N A  +++  P +       +        L + +     
Sbjct: 361 VFSSLPIGLALLDLNGRVIRANPAWHQVWRLPEQPQRSSFYVGIDLVEHLLTRLSDPFRL 420

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISEWKQEKN 569
               ++      Q  E         ++L  L +  +      +     + D +  +    
Sbjct: 421 SEFCDLGQRSPDQVFEINLQLRQPYQELHVLSVPTRDSHHQLTGRLWVVSDRTRER---- 476

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
                     +    K +F+  VSHE+RTPLT+I+G++E++ N++   L +    E+   
Sbjct: 477 ----------ESDRLKDEFIGIVSHELRTPLTSILGYTEILLNRQD--LDSESQREFLLT 524

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           +    + +  +V DLLD+S++E+G + L+   V L + + E    +     + ++LI   
Sbjct: 525 VSNEADRLHKMVKDLLDVSRLEAGVVKLNRWAVGLWQVIEELTLQLHTQLVQHKLLIDMR 584

Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS----------NEEVIL 739
               +P + AD   VKQI +N+LSNAI ++P G +I +                 + +++
Sbjct: 585 TP--LPPVFADRDKVKQIIVNLLSNAIKYSPEGTEIQLIVRQAEASDLPAGHPAGQWMLI 642

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V+D G+G+   +  +  + F ++ NS   +  G GLGL + + +V+ + G+ ++ ST  
Sbjct: 643 TVQDQGIGIEPEDQARLFERFHRVDNSNTRQKSGVGLGLYITRLLVELHGGRIWVQSTVG 702

Query: 800 KGTLIEIIFPLYDT 813
            G+      P++  
Sbjct: 703 VGSSFSFTLPIWTV 716


>gi|149912708|ref|ZP_01901242.1| sensor histidine kinase/response regulator [Roseobacter sp.
           AzwK-3b]
 gi|149813114|gb|EDM72940.1| sensor histidine kinase/response regulator [Roseobacter sp.
           AzwK-3b]
          Length = 728

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 105/460 (22%), Positives = 190/460 (41%), Gaps = 33/460 (7%)

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
           A +      ++R      A L           A          +      +N       D
Sbjct: 8   AEERRARLAAERLLEQKQAELQAANRKLGK-HAERLSDQIVETRAEVETVRNENLRVKSD 66

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF--------GYPVED 491
               K+K+EI   +L   ++   DG A  + +  +++ N +   +F        G    +
Sbjct: 67  LTAAKQKVEIAERRLWHSIQTIRDGFAFFDADSRMIAANDSWLAVFDGLEAVKPGISYIE 126

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
           IL+      +     +    +   +L        E   +        + L   I +    
Sbjct: 127 ILQFLTEEGIVNIGNTPPAQWRERMLDRWQGNAPEPEVI-RLWNGAYIKL---IDERGQG 182

Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
                   DI+E    + +L  A++ AE  +  KS FLA +SHEIRTP+  ++G +E++ 
Sbjct: 183 GDVVSLALDITETILREKELQDARRRAEAANHAKSSFLANMSHEIRTPMNGVVGMAELLM 242

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
           +             YAN I +SG  +L I+ND+LD SKIE+ K++LH EP  L+  V E 
Sbjct: 243 DTDL----TEEQNLYANTIRKSGEALLVIINDVLDYSKIEAEKLHLHEEPFDLERTVHEL 298

Query: 672 ISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
           + L+Q  A +K + +   +   +P R   D   ++Q+  N++ NA+ FT  G  +++   
Sbjct: 299 VMLLQPNARDKELELLVDYDMFLPTRFHGDPGRIRQVLTNLIGNAVKFTEKG-HVLVRVV 357

Query: 731 ------------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
                         +   + + V DTG+G+   +       F Q+ +++  R EGTGLGL
Sbjct: 358 GMPAAAPESPEHADAIAHLRITVEDTGIGIAPDKQAHIFGEFNQVEDAKNRRFEGTGLGL 417

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEII--FPLYDTSHP 816
            +++ ++    G  +I S   +G+   I    P+++   P
Sbjct: 418 AISRKLIAMMQGDIWIGSEEGRGSTFGISLNLPVHERLDP 457


>gi|123443916|ref|YP_001007887.1| aerobic respiration control sensor protein ArcB [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|122090877|emb|CAL13759.1| aerobic respiration control sensor/response regulatory protein
           [Yersinia enterocolitica subsp. enterocolitica 8081]
          Length = 778

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 79/382 (20%), Positives = 164/382 (42%), Gaps = 18/382 (4%)

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
                + ++  +   L S L+A+ D +   N +      NRA+  L G   + ++     
Sbjct: 142 HREQAQVELGQQSALLRSFLDASPDLVYYRNEDNEFSGCNRAMELLTGKSEKQLVGLTPK 201

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII--KKLPFSSCYSL 556
                +    +     ++   ++  T E+  +     +    LR +    ++        
Sbjct: 202 DVYAPDIAEKVMETDEKVFRHNVSLTYEQWLVYPDGRKACFELRKVPFYDRVGKRHGLMG 261

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
              DI+E K+ ++ L +        S  K+ F++ +SHE+RTPL  I+G S ++ +    
Sbjct: 262 FGRDITERKRYQDALEN-------ASRDKTTFISTISHELRTPLNGIVGLSRILLDTEL- 313

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
              +   ++Y   I  S   + +I ND++++ K+E  K+ L  +P+     +++  +L  
Sbjct: 314 ---DSEQLKYLKTIHVSAITLGNIFNDIIEMDKLERRKVQLDNQPIDFTGFMADLENLSG 370

Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
           L    K +         +P  ++ D   ++QI  N++ NA+ FT  G +I++     SN+
Sbjct: 371 LLVQPKGLKFIMEPQLPLPEKVITDGTRLRQILWNLIGNAVKFTQQG-EIVVRVRRESND 429

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ-IRGEGTGLGLPLAKAMVDANMGKFYI 794
            +I  V D+G+G+   E +K    + Q+ +S       GTG+GL ++K +  +  G   +
Sbjct: 430 RLIFEVEDSGMGIPEDEQDKIFAMYYQVKDSNGGRPATGTGIGLAVSKRLAQSMGGDITV 489

Query: 795 FSTPAKGTLIEIIF--PLYDTS 814
            S    G+   +    P    +
Sbjct: 490 KSVQGAGSCFTLTIKAPAVQAA 511



 Score = 41.9 bits (97), Expect = 0.48,   Method: Composition-based stats.
 Identities = 16/124 (12%), Positives = 35/124 (28%), Gaps = 5/124 (4%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN-TWYGKTTLWPIE 153
               +  +    G    +++G+   DV      +      + + R N +   +  L   +
Sbjct: 177 FSGCNRAMELLTGKSEKQLVGLTPKDVYAPDIAEKVMETDEKVFRHNVSLTYEQWLVYPD 236

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
           G       +L  +P Y R  +  G  GFG           +   +   +  +        
Sbjct: 237 GRKACF--ELRKVPFYDRVGKRHGLMGFG--RDITERKRYQDALENASRDKTTFISTISH 292

Query: 214 HSSV 217
               
Sbjct: 293 ELRT 296



 Score = 40.0 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 21/224 (9%), Positives = 54/224 (24%), Gaps = 10/224 (4%)

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
           V  L E       ++   +       E +    E+   +N     +++          + 
Sbjct: 77  VEQLEESRQRLSRLVDKLEVMRYRDLELNKQLTENIAQLNQEIVEREKAEKAHLQVVDKL 136

Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVD 358
            E + H           +   L    +D  P   +  +        N +  LLT      
Sbjct: 137 KEEMGH--REQAQVELGQQSALLRSFLDASPDLVYYRNEDNEFSGCNRAMELLTGKSEKQ 194

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
            +        L      + + A K +           +      + +             
Sbjct: 195 LVG-------LTPKDVYAPDIAEKVMETDEKVFRHNVSLTYEQWLVYPDGRKACFELRKV 247

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
              ++  +     G   +  + +  +  +E       + +   S
Sbjct: 248 PFYDRVGKRHGLMGFGRDITERKRYQDALENASRDKTTFISTIS 291


>gi|91211512|ref|YP_541498.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli UTI89]
 gi|237704693|ref|ZP_04535174.1| sensor protein RcsC [Escherichia sp. 3_2_53FAA]
 gi|91073086|gb|ABE07967.1| sensor protein RcsC [Escherichia coli UTI89]
 gi|226901059|gb|EEH87318.1| sensor protein RcsC [Escherichia sp. 3_2_53FAA]
 gi|294492820|gb|ADE91576.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           IHE3034]
 gi|323952012|gb|EGB47886.1| RcsC Alpha-Beta-Loop [Escherichia coli H252]
 gi|323955986|gb|EGB51739.1| RcsC Alpha-Beta-Loop [Escherichia coli H263]
          Length = 949

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 99/495 (20%), Positives = 186/495 (37%), Gaps = 41/495 (8%)

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
             P+   +             + LT  +S    +                    + ++L 
Sbjct: 239 TLPMGVTILDENGHT-----LISLTGPESKIKGDPRWMQERSWFGY----TEGFRELVLK 289

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV---DTRINK 444
           ++      +      +    E    +              +       E         + 
Sbjct: 290 KNLPPSSLSIVYSVPVDKVLERIRMLILNAILLNVLAGAALFTLARMYERRIFIPAESDA 349

Query: 445 RKMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            ++E        I+ +   GI I+   +G+ + +N            +  ++        
Sbjct: 350 LRLEEHEQFNRKIVASAPVGICILRTADGVNILSNELAHTYLNMLTHEDRQR-------- 401

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                    LT+I+       ++      T     L +  +  +    +     + D+S 
Sbjct: 402 ---------LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSS 448

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + +  L    + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R 
Sbjct: 449 RVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR- 506

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
                 ++ S +L+L I++D+LD SKIES ++ +     S  E ++   +        K+
Sbjct: 507 --LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQ 564

Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           + +      ++P  +  D   ++Q+  N+LSNAI FT +G  I++       + + +RVR
Sbjct: 565 LGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG-CIVLHVR-ADGDYLSIRVR 622

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTGVG+   E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+
Sbjct: 623 DTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGS 682

Query: 803 LIEIIFPLYDTSHPH 817
              +  PLY   +P 
Sbjct: 683 QFTVRIPLYGAQYPQ 697


>gi|331642848|ref|ZP_08343983.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
           C) [Escherichia coli H736]
 gi|331039646|gb|EGI11866.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
           C) [Escherichia coli H736]
          Length = 775

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 99/495 (20%), Positives = 186/495 (37%), Gaps = 41/495 (8%)

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
             P+   +             + LT  +S    +                    + ++L 
Sbjct: 65  TLPMGVTILDENGHT-----LISLTGPESKIKGDPRWMQERSWFGY----TEGFRELVLK 115

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV---DTRINK 444
           ++      +      +    E    +              +       E         + 
Sbjct: 116 KNLPPSSLSIVYSVPVDKVLERIRMLILNAILLNVLAGAALFTLARMYERRIFIPAESDA 175

Query: 445 RKMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            ++E        I+ +   GI I+   +G+ + +N            +  ++        
Sbjct: 176 LRLEEHEQFNRKIVASAPVGICILRTADGVNILSNELAHTYLNMLTHEDRQR-------- 227

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                    LT+I+       ++      T     L +  +  +    +     + D+S 
Sbjct: 228 ---------LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSS 274

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + +  L    + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R 
Sbjct: 275 RVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR- 332

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
                 ++ S +L+L I++D+LD SKIES ++ +     S  E ++   +        K+
Sbjct: 333 --LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQ 390

Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           + +      ++P  +  D   ++Q+  N+LSNAI FT +G  I++       + + +RVR
Sbjct: 391 LGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG-CIVLHVR-ADGDYLSIRVR 448

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTGVG+   E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+
Sbjct: 449 DTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGS 508

Query: 803 LIEIIFPLYDTSHPH 817
              +  PLY   +P 
Sbjct: 509 QFTVRIPLYGAQYPQ 523


>gi|323967660|gb|EGB63072.1| RcsC Alpha-Beta-Loop [Escherichia coli M863]
 gi|327252487|gb|EGE64146.1| sensor kinase protein rcsC [Escherichia coli STEC_7v]
          Length = 949

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 99/495 (20%), Positives = 186/495 (37%), Gaps = 41/495 (8%)

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
             P+   +             + LT  +S    +                    + ++L 
Sbjct: 239 TLPMGVTILDENGHT-----LISLTGPESKIKSDPRWMQERSWFGY----TEGFRELVLK 289

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV---DTRINK 444
           ++      +      +    E    +              +       E         + 
Sbjct: 290 KNLPPSSLSIVYSVPVDKVLERIRMLILNAILLNVLAGAALFTLARMYERRIFIPAESDA 349

Query: 445 RKMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            ++E        I+ +   GI I+   +G+ + +N            +  ++        
Sbjct: 350 LRLEEHEQFNRKIVASAPVGICILRTADGVNILSNELAHTYLNMLTHEDRQR-------- 401

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                    LT+I+       ++      T     L +  +  +    +     + D+S 
Sbjct: 402 ---------LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSS 448

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + +  L    + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R 
Sbjct: 449 RVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR- 506

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
                 ++ S +L+L I++D+LD SKIES ++ +     S  E ++   +        K+
Sbjct: 507 --LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQ 564

Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           + +      ++P  +  D   ++Q+  N+LSNAI FT +G  I++       + + +RVR
Sbjct: 565 LGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG-CIVLHVR-ADGDYLSIRVR 622

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTGVG+   E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+
Sbjct: 623 DTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGS 682

Query: 803 LIEIIFPLYDTSHPH 817
              +  PLY   +P 
Sbjct: 683 QFTVRIPLYGAQYPQ 697


>gi|332756179|gb|EGJ86530.1| sensor kinase protein rcsC [Shigella flexneri 2747-71]
          Length = 949

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 99/495 (20%), Positives = 186/495 (37%), Gaps = 41/495 (8%)

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
             P+   +             + LT  +S    +                    + ++L 
Sbjct: 239 TLPMGVTILDENGHT-----LISLTGPESKIKGDPRWMQERSWFGY----TEGFRELVLK 289

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV---DTRINK 444
           ++      +      +    E    +              +       E         + 
Sbjct: 290 KNLPPSSLSIVYSVPVDKVLERIRMLILNAILLNVLAGAALFTLARMYERRIFIPAESDA 349

Query: 445 RKMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            ++E        I+ +   GI I+   +G+ + +N            +  ++        
Sbjct: 350 LRLEEHEQFNRKIVASAPVGICILRTADGVNILSNELAHTYLNMLTHEDRQR-------- 401

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                    LT+I+       ++      T     L +  +  +    +     + D+S 
Sbjct: 402 ---------LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSS 448

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + +  L    + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R 
Sbjct: 449 RVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR- 506

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
                 ++ S +L+L I++D+LD SKIES ++ +     S  E ++   +        K+
Sbjct: 507 --LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQ 564

Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           + +      ++P  +  D   ++Q+  N+LSNAI FT +G  I++       + + +RVR
Sbjct: 565 LGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG-CIVLHVR-ADGDYLSIRVR 622

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTGVG+   E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+
Sbjct: 623 DTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGS 682

Query: 803 LIEIIFPLYDTSHPH 817
              +  PLY   +P 
Sbjct: 683 QFTVRIPLYGAQYPQ 697


>gi|323188054|gb|EFZ73349.1| sensor kinase protein rcsC [Escherichia coli RN587/1]
          Length = 949

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 98/427 (22%), Positives = 172/427 (40%), Gaps = 35/427 (8%)

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
           +     L  I+      L +  I                 E        +      E  Q
Sbjct: 303 VPVDKVLERIRM-----LILNAILLNVLAGAALFTLARMYERRIFIPAESDALRLEEHEQ 357

Query: 454 L-CSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
               I+ +   GI I+   +G+ + +N            +  ++                
Sbjct: 358 FNRKIVASAPVGICILRTADGVNILSNELAHTYLNMLTHEDRQR---------------- 401

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571
            LT+I+       ++      T     L +  +  +    +     + D+S   + +  L
Sbjct: 402 -LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSSRVKMEESL 456

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
               + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R       ++
Sbjct: 457 QEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR---LVTAMN 512

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
            S +L+L I++D+LD SKIES ++ +     S  E ++   +        K++ +     
Sbjct: 513 NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFIE 572

Query: 692 NNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
            ++P  +  D   ++Q+  N+LSNAI FT +G  I++       + + +RVRDTGVG+  
Sbjct: 573 PDVPVALNGDPMRLQQVISNLLSNAIKFTDTG-CIVLHVR-ADGDYLSIRVRDTGVGIPA 630

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+   +  PL
Sbjct: 631 KEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIPL 690

Query: 811 YDTSHPH 817
           Y   +P 
Sbjct: 691 YGAQYPQ 697


>gi|124383088|ref|YP_001023999.1| sensory box histidine kinase [Burkholderia mallei NCTC 10229]
 gi|126447644|ref|YP_001078619.1| sensory box histidine kinase [Burkholderia mallei NCTC 10247]
 gi|254356639|ref|ZP_04972914.1| sensory box histidine kinase [Burkholderia mallei 2002721280]
 gi|124291108|gb|ABN00378.1| sensory box histidine kinase [Burkholderia mallei NCTC 10229]
 gi|126240498|gb|ABO03610.1| sensory box histidine kinase [Burkholderia mallei NCTC 10247]
 gi|148025666|gb|EDK83789.1| sensory box histidine kinase [Burkholderia mallei 2002721280]
          Length = 821

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 98/632 (15%), Positives = 209/632 (33%), Gaps = 26/632 (4%)

Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE 245
             R   D  A   + D          +     ++ +     +            + S   
Sbjct: 191 EIRKQFDALATLVQGDAVQQQRLATLRMLLEKKQHELAATIELRKTEGFDAAQAIVSSDA 250

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
                D           T ++     ++                G L      SF Y+  
Sbjct: 251 GKIFMDRARVMVNEMEATVQQQLRTLRDRARATRDIAIGVGLASGLLTLAVCVSFGYVMR 310

Query: 306 RNHPSLSAYFD---EGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIE 361
           R     +A      E   L   T+             G + + N     +T   +   + 
Sbjct: 311 RLLLVEAAAAHDLFEQRELLHVTLASIGDGVIATDVGGRITFFNRVAEEMTALCADAVVG 370

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                  L+     +      P  +    R   +  A    +  +    L +        
Sbjct: 371 QPIE-RVLMFRHATTQRVIDNPARVAVERRRTASLPAHTRFVGRSGGE-LPVDGNAAPTF 428

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
           +   + +    I  +  +    + +  +        +EA    + ++ R+G I+  N   
Sbjct: 429 DANGKLVGAVLIVRDVSERERAEERFRLA-------VEAAPTAMIMVGRDGRIVLVNSQA 481

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLL 539
            KLFGY   D++     + + +   +    +          + +   +   G  ++    
Sbjct: 482 EKLFGYARGDMIGHGIDMLVPERFRAGHWAHRDAFFGNPDARPMGEGRDLFGLRRDGSEF 541

Query: 540 SLRIIIKKLPFSSCYSLT--MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
            + I +  +  S    +   + DI+  K+ + +L    +   + +     F    SH+++
Sbjct: 542 PVEIGLNPITTSEGAFVLCSIADITARKRAELELRRRSEELARSNQDLEQFAYVASHDLQ 601

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
            PL A+ G  ++++ +  G L + R  E+  +       +  +++DLL  S++  G++  
Sbjct: 602 EPLRAVAGPLQLLQRRYQGQL-DARADEFIGHAVDGATRMQSLIDDLLSYSRV--GRLED 658

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
              PV  +  + EA+  +     E    +       +P +      +  +  N++ NAI 
Sbjct: 659 ARRPVDCEHVLDEALRNLSAAIRESGAQVTHD---PLPTVHGIEAQLVLLFQNLIGNAIK 715

Query: 718 FTPSGGQIIIST-THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
           F        I    HT ++  +LRVRD G+G+     E+    F ++    +    GTGL
Sbjct: 716 FRGKDRVARIHLEAHTRDDAWLLRVRDNGIGIDPQYFERIFLIFQRLH--TRREYPGTGL 773

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           GL L K +V+ + G+ ++ S P +GT      
Sbjct: 774 GLALCKRIVEHHGGRIFVESEPGQGTTFSFTL 805



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 33/353 (9%), Positives = 76/353 (21%), Gaps = 19/353 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL----KRQNTWY 144
           +   G +  ++ +  K  G     MIG  +  +        +    D        +    
Sbjct: 468 VGRDGRIVLVNSQAEKLFGYARGDMIGHGIDMLVPERFRAGHWAHRDAFFGNPDARPMGE 527

Query: 145 GKTTL-WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
           G+       +G+    P+++   PI +    F        +             +R  ++
Sbjct: 528 GRDLFGLRRDGS--EFPVEIGLNPITTSEGAFV----LCSIADITARKRAELELRRRSEE 581

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
            +  ++  +  + V         +    P   ++ +     +  A +      +    + 
Sbjct: 582 LARSNQDLEQFAYVASHDLQEPLRAVAGPLQLLQRRYQGQLDARADEFIGHAVDGATRMQ 641

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYF---GTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
           S    L        +   +            L+N S    E  +   H  L         
Sbjct: 642 SLIDDLLSYSRVGRLEDARRPVDCEHVLDEALRNLSAAIRESGAQVTHDPLPTVHGIEAQ 701

Query: 321 LTPETVDKCPIPFFVYSHGNL-----FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
           L     +             +              L + +             +    + 
Sbjct: 702 LVLLFQNLIGNAIKFRGKDRVARIHLEAHTRDDAWLLRVRDNGIGIDPQYFERIFLIFQR 761

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
                  P                   I    E     TF          E  
Sbjct: 762 LHTRREYPGTGLGLALCKRIVEHHGGRIFVESEPGQGTTFSFTLSRPGADETR 814



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/308 (9%), Positives = 68/308 (22%), Gaps = 25/308 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI----GDLLKRQNTWY 144
            D  G +   +    +     A  ++G  +  V    H      I       ++R+ T  
Sbjct: 344 TDVGGRITFFNRVAEEMTALCADAVVGQPIERVLMFRHATTQRVIDNPARVAVERRRTAS 403

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNR---VDNDPRALGKRLD 201
                  +  +   +P+D  A P +  N +  G     IV          +   L     
Sbjct: 404 LPAHTRFVGRSGGELPVDGNAAPTFDANGKLVGA--VLIVRDVSERERAEERFRLAVEAA 461

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
                +         V  +   +F            + +        H          P 
Sbjct: 462 PTAMIMVGRDGRIVLVNSQAEKLFGYARGDMIGHGIDMLVPERFRAGHWAHRDAFFGNPD 521

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
                            + +++  +     +  +       L      +     +     
Sbjct: 522 ARPMGEGR--DLFGLRRDGSEFPVEIGLNPITTSEGAF--VLCSIADITARKRAELELRR 577

Query: 322 TPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
             E + +                   F  +  +   + +    G   LL        +A 
Sbjct: 578 RSEELARSNQDL------------EQFAYVASHDLQEPLRAVAGPLQLLQRRYQGQLDAR 625

Query: 382 KPVMLYRS 389
               +  +
Sbjct: 626 ADEFIGHA 633


>gi|30063657|ref|NP_837828.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Shigella flexneri 2a str. 2457T]
 gi|30041910|gb|AAP17637.1| sensor for ctr capsule biosynthesis, probable histidine kinase
           acting on RcsB [Shigella flexneri 2a str. 2457T]
 gi|281601668|gb|ADA74652.1| Integral membrane sensor hybrid histidine kinase precursor
           [Shigella flexneri 2002017]
 gi|313651334|gb|EFS15732.1| sensor kinase protein rcsC [Shigella flexneri 2a str. 2457T]
 gi|333016630|gb|EGK35959.1| sensor kinase protein rcsC [Shigella flexneri K-304]
          Length = 949

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 98/427 (22%), Positives = 172/427 (40%), Gaps = 35/427 (8%)

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
           +     L  I+      L +  I                 E        +      E  Q
Sbjct: 303 VPVDKVLERIRM-----LILNAILLNVLAGAALFTLARMYERRIFIPAESDALRLEEHEQ 357

Query: 454 L-CSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
               I+ +   GI I+   +G+ + +N            +  ++                
Sbjct: 358 FNRKIVASAPVGICILRTADGVNILSNELAHTYLNMLTHEDRQR---------------- 401

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571
            LT+I+       ++      T     L +  +  +    +     + D+S   + +  L
Sbjct: 402 -LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSSRVKMEESL 456

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
               + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R       ++
Sbjct: 457 QEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR---LVTAMN 512

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
            S +L+L I++D+LD SKIES ++ +     S  E ++   +        K++ +     
Sbjct: 513 NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFIE 572

Query: 692 NNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
            ++P  +  D   ++Q+  N+LSNAI FT +G  I++       + + +RVRDTGVG+  
Sbjct: 573 PDVPVALNGDPMRLQQVISNLLSNAIKFTDTG-CIVLHVR-ADGDYLSIRVRDTGVGIPA 630

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+   +  PL
Sbjct: 631 KEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIPL 690

Query: 811 YDTSHPH 817
           Y   +P 
Sbjct: 691 YGAQYPQ 697


>gi|320353025|ref|YP_004194364.1| PAS/PAC sensor hybrid histidine kinase [Desulfobulbus propionicus
           DSM 2032]
 gi|320121527|gb|ADW17073.1| PAS/PAC sensor hybrid histidine kinase [Desulfobulbus propionicus
           DSM 2032]
          Length = 1020

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 94/523 (17%), Positives = 181/523 (34%), Gaps = 40/523 (7%)

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVD-DIEIAGG 365
                      E       ++  +   + S        N  F  +T Y   + ++     
Sbjct: 374 QRRAERALQRSEEQMRLFFERQIVGMAITSPDKGWLQVNDRFCRMTGYSREELELLDWAK 433

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
           L+         D  A   +            +     ++ +   ++ +        ++  
Sbjct: 434 LTH------PDDLAADLNLFGRLLAGEINDYALEKRFLRKDG-TTIVVNLSVGCVRDERG 486

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSKL 484
                 G+  +  + +  +  +      L SILE   + I I +  +   +  NRA  +L
Sbjct: 487 AMQYVLGVVEDITERKRAEESLRQSQEFLSSILENLPNMIFIKDAKDLRFVRFNRAGEEL 546

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
            GY  ED++ K    F              E+L       + +  + +    ++L  + I
Sbjct: 547 LGYRREDLIGKNDYDFFPTEQADFFIRKDREVLKGGQLVDIAEEVIDTRAGRRILHTKKI 606

Query: 545 IKKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS--DFLARVSHEIRTPL 600
                  S         DI+E +Q   +    ++   +    +S       V+H+    L
Sbjct: 607 PVMGDNGSPAYLLGISEDITERQQAAEEREKLREQLSQAQKLESVGRLAGGVAHDFNNML 666

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
           +AI+G +E     R     +P +      I++S     D+V+ LL  ++    K  +  +
Sbjct: 667 SAILGHAE--LAMRLCAPNDPIHAR-LEVIEQSALRSADLVSQLLAFAR----KQTVAPK 719

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720
            + ++E  +  + ++Q     + I +      ++  I  D   + Q+  N+  NA     
Sbjct: 720 VLDMNETAASLLRMLQ-RLMGEDIDLVWIPKIDLWPIKIDPSQIDQLLANLCVNARDAIS 778

Query: 721 SGGQIIISTT--------------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
             G+++I T                   E V+L V D G GM    L    +PF      
Sbjct: 779 GVGKVVIETGNATFDASYCAVHPDFVPGEYVMLAVSDNGDGMDKDTLAHIFEPFFTTKEP 838

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
               G+GTGLGL     +V  N G  +++S PAKGT  +I  P
Sbjct: 839 ----GKGTGLGLATVYGIVKQNNGFIHVYSEPAKGTTFKIYLP 877



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 21/308 (6%), Positives = 81/308 (26%), Gaps = 14/308 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNT--WYGK 146
                   ++++   +  G    ++  +    ++    +  + ++   L       +  +
Sbjct: 402 TSPDKGWLQVNDRFCRMTGYSREELELLDWAKLTHPDDLAADLNLFGRLLAGEINDYALE 461

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                 +GT +   ++L+   +           G  +V             ++  +  S 
Sbjct: 462 KRFLRKDGTTIV--VNLSVGCVRDERGAMQYVLG--VVEDITERKRAEESLRQSQEFLSS 517

Query: 207 LHEIKKGHSSVEKEKYDIF-----SQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
           + E       ++  K   F     + +    + R      +  +++  +       K   
Sbjct: 518 ILENLPNMIFIKDAKDLRFVRFNRAGEELLGYRREDLIGKNDYDFFPTEQADFFIRKDRE 577

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
           +      +   E+       +         +  ++      L      +      E    
Sbjct: 578 VLKGGQLVDIAEEVIDTRAGRRILHTKKIPVMGDNGSPAYLLGISEDITERQQAAEEREK 637

Query: 322 TPETVDKCP--IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
             E + +          + G     N     +  +  +  + +      +    ++ + +
Sbjct: 638 LREQLSQAQKLESVGRLAGGVAHDFNNMLSAILGHAEL-AMRLCAPNDPIHARLEVIEQS 696

Query: 380 AIKPVMLY 387
           A++   L 
Sbjct: 697 ALRSADLV 704



 Score = 40.8 bits (94), Expect = 0.95,   Method: Composition-based stats.
 Identities = 19/211 (9%), Positives = 45/211 (21%), Gaps = 10/211 (4%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151
                  +    + +G     +IG    D       D        + +            
Sbjct: 533 DLRFVRFNRAGEELLGYRREDLIGKNDYDFFPTEQADFFIRKDREVLKGGQLVDIAEEV- 591

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
           I+       +    +P+   N   +   G  I              ++L ++ S   +++
Sbjct: 592 IDTRAGRRILHTKKIPVMGDNGSPAYLLG--ISEDITERQQAAEEREKLREQLSQAQKLE 649

Query: 212 KGHSSVEKEKYD-------IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
                     +D       I         L   N           +  +   +    L +
Sbjct: 650 SVGRLAGGVAHDFNNMLSAILGHAELAMRLCAPNDPIHARLEVIEQSALRSADLVSQLLA 709

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNN 295
                        +N    +  +    L   
Sbjct: 710 FARKQTVAPKVLDMNETAASLLRMLQRLMGE 740


>gi|281206650|gb|EFA80836.1| histidine kinase [Polysphondylium pallidum PN500]
          Length = 1688

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 95/439 (21%), Positives = 171/439 (38%), Gaps = 72/439 (16%)

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVS------------ 482
           E  + ++ +R +     +L   +E + D +       G +  ++R               
Sbjct: 380 EIFNRKLAERALAESQERLELAMEGSEDAVWDWKMNSGELHISSRWFQILKSKENHYQSR 439

Query: 483 ---------------KLFG------------------YPVEDILRKPFTVFLEQNTPSVM 509
                          ++FG                  + +     K  T  +        
Sbjct: 440 SLCEELRSQDSTTPGEVFGDELFSPILLEESIASPNTHQLAVWNMKHLTQLIHPEDKERF 499

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF------SSCYSLTMHDISE 563
              + + +        E       K    L + +  K +            + T+ D++ 
Sbjct: 500 IAEIKKTII-RETSIFEIECRMRKKTGGYLYIIMRGKVVSESLTKDSQLRMAGTLRDVTS 558

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            K  +  L   K+ AE+ +  KS F+A VSHE+RTPL+ +IG S+++         N   
Sbjct: 559 RKDMQR-LILEKEAAEEANKAKSAFVATVSHEVRTPLSGVIGVSDLLLETVL----NEEQ 613

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            +Y   I +S   +L I+ND+LD SK+ES ++ +   P S+ E     I ++   A    
Sbjct: 614 RDYVQTIQKSSQALLTIINDILDYSKLESKQLKMETIPFSIIETGQAVIYMLS-VATNDD 672

Query: 684 ILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQ---III--------STTH 731
           + +      N+P ++  D   V+Q+ LN++SNAI FT  G     I +        S+  
Sbjct: 673 VDLLFRVPPNVPDVVIGDAMRVRQVLLNLVSNAIKFTSHGHVLCDISVVESLNPLHSSRS 732

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA-NMG 790
            +   + + V DTG+G+     E   +PF Q  NS   +  GTGLGL + K +++    G
Sbjct: 733 DNTIHLCITVEDTGIGIPQSLFEAIFEPFSQADNSTTRKYGGTGLGLSITKRLIEEVMGG 792

Query: 791 KFYIFSTPAKGTLIEIIFP 809
             ++ ST   G+  +   P
Sbjct: 793 TIHVSSTVGLGSTFKCTIP 811


>gi|256423413|ref|YP_003124066.1| PAS/PAC sensor signal transduction histidine kinase [Chitinophaga
           pinensis DSM 2588]
 gi|256038321|gb|ACU61865.1| PAS/PAC sensor signal transduction histidine kinase [Chitinophaga
           pinensis DSM 2588]
          Length = 922

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 109/764 (14%), Positives = 243/764 (31%), Gaps = 52/764 (6%)

Query: 77  DPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGD 135
           +  P  + F +       L   +E L +  G  +   IG  + D    L        + D
Sbjct: 177 EQAPNPI-FIFK-GEDMVLAMANEPLLRIWGVNSDA-IGKPMLDTLPELKGQGFMEMLLD 233

Query: 136 LLKRQNTWYGKT---TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192
           +   ++   GK         +G    +  +    P    +   SG     I +       
Sbjct: 234 VYHNKHIVTGKEKPAVFHRPDGRKETMYFNFVYQPYKEADGTVSGV--LVIANDVTEQVV 291

Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS--LTEYYAHK 250
            R   +  + +F  L              +           L      +   L +Y    
Sbjct: 292 ARKRLEESELRFRALVMATSDVVYRMNPDWSEMQNLVGRGFLTDTEVPTPDWLKKYIHPD 351

Query: 251 DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310
           D               S    +      +            + + +    E+    +  +
Sbjct: 352 DQPHVQALIKKSVQTHSVFELEHQVFRQDGAIGWTFSRAIPIHDEAGNIIEWFGAASDIT 411

Query: 311 LSAYFDEGE-----------NLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVD 358
               F++              L        P   +++       YAN + L +      +
Sbjct: 412 QRKRFEQELESTRDELRVSKRLYEAVTASTPDLIYIFDRNYKFIYANQALLTMWGRTWEE 471

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
            +    GL  L   P  ++ +  + +    + +  I                    F P 
Sbjct: 472 SVGQ--GLLALGYEPWHAEMH-EREIDQVIATKKPIRGEV-AFPHSVMGYRMYDYIFAPV 527

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
                  E     G   +  D ++ +  ++    Q  ++ ++    I   +  G     N
Sbjct: 528 LNEAGEVEV--VAGTTRDISDLKVAELALKHSEEQFRTLTQSLPQLICTADIHGYCDFFN 585

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
           +      G   ED   K + +++  N   ++       L     ++L        ++   
Sbjct: 586 QQWYDYTGSHAEDAEGKGWMMYVHPNQRELLYDKWERSLKSG--ESLAFEFQLKARDGHY 643

Query: 539 LSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKI----AEKESSHKSDFLA 590
               I+   +         +   + +I E K  + KL           ++ +     F  
Sbjct: 644 QWFYIVGNPIKDEDGEILKWVSALTNIEEQKAVEEKLEQLVNERTGALQRSNDDLEQFAH 703

Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650
             SH+++ P+  I  F + +++     L   +   Y N I+ + N + D++  +L+ S I
Sbjct: 704 VASHDLKEPVRKIKTFVDRLEHDGETKLS-EKGSSYLNKINTAANRMYDMIEGVLNYSSI 762

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710
           ++ +  L    ++L+E ++     +++  N+K+  I       +P +      + Q+  N
Sbjct: 763 DNAEQPL--SSINLNETLNSIELDLEILMNQKKAHIVYE---GLPTVKGAPLLIYQLFYN 817

Query: 711 ILSNAIHFTPSGGQ--IIISTTHTSN---EEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           +++N++ FT       I ++    +      + + V+D G+G    + +K    F ++ +
Sbjct: 818 LINNSLKFTRLDTPPLITVTAKKAAKMGIPYLQIDVKDNGIGFEQTQAQKIFNSFIRLNS 877

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             + + EGTGLGL L K +V+ + G         +G +  I  P
Sbjct: 878 --KDKFEGTGLGLALCKKIVERHQGYITASGAENEGAVFSIFLP 919



 Score = 65.0 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 36/289 (12%), Positives = 88/289 (30%), Gaps = 16/289 (5%)

Query: 313 AYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
           A + +    +   +    +P  ++     L + N +FL L        +        L  
Sbjct: 36  ASWPKTLQFSLNMLLHTNLPMMLFWGDRSLCFYNDAFLPLLPAGKQTLVPGKAAAE-LWP 94

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
               +   A+  V   RS+   ++    +     +  +S           ++    +   
Sbjct: 95  DTWPAIQPAVNQV---RSNGDPVSHDNDIFARYSHNGHSCHHHHHYSPIQDETGLRVAVL 151

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVE 490
            I  +    +  K  +         I+E   + I I    + ++   N  + +++G   +
Sbjct: 152 LICTQTAQNKHEKSAV--SAQHFKGIVEQAPNPIFIFKGEDMVLAMANEPLLRIWGVNSD 209

Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL-EKITLGSTKEEKLLSLRIIIK--- 546
            I  KP    L +         L ++       T  EK  +    + +  ++        
Sbjct: 210 AI-GKPMLDTLPELKGQGFMEMLLDVYHNKHIVTGKEKPAVFHRPDGRKETMYFNFVYQP 268

Query: 547 ---KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
                   S   +  +D++E    + +L  ++          SD + R+
Sbjct: 269 YKEADGTVSGVLVIANDVTEQVVARKRLEESELRFRALVMATSDVVYRM 317


>gi|59712729|ref|YP_205505.1| aerobic respiration control sensor protein ArcB [Vibrio fischeri
           ES114]
 gi|59480830|gb|AAW86617.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Vibrio fischeri ES114]
          Length = 788

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 87/399 (21%), Positives = 168/399 (42%), Gaps = 19/399 (4%)

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
               +E E       + ++  +   L S L+ + D I   N  G+    N+A+ +L G  
Sbjct: 132 AMEDLENEVFQREKAQLELAEQTALLRSYLDTSPDIIYYRNDLGLFSGCNKAMEQLTGKL 191

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            ++++        +    + +     ++L  +   T E+        +    L  I    
Sbjct: 192 EKELIGLSPKDVYDAEVAAKVIDTDRQVLQENQALTYEQWLDYPDGRKACFELNKIPFYS 251

Query: 549 PFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
                        +I+E K+ ++ L       +K S  K+ F++ +SHE+RTPL  I+G 
Sbjct: 252 KDGRRLGLVGFGRNITERKEYEDAL-------QKASRDKTTFISTISHELRTPLNGIVGL 304

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
           S ++ + R     +     Y   I+ S   + +I ND++D+ K +  K+ L  +P+    
Sbjct: 305 SRMLLDSRL----DDEQHNYMRTINVSAITLGNIFNDIIDMDKFDRRKLELFPKPLDFIS 360

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI 725
            V+E  ++  L A +K +        ++P  I  D   ++Q+  N++ NA  FT  GG +
Sbjct: 361 FVTEMENISGLMAEQKGLRFDLERLTDLPPHISVDSTRLRQVLWNLVGNATKFTKEGGVV 420

Query: 726 -IISTT-HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGEGTGLGLPLAK 782
             +S   H  + E+   + DTG+G+   ELE     + Q+   +      GTG+GL ++K
Sbjct: 421 MSVSADIHQDSAEITFEIEDTGIGIPEEELENVFAMYYQVKQGKDNLHAVGTGIGLAVSK 480

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIF--PLYDTSHPHDC 819
            +++   G   + S    G+   +    PL D     + 
Sbjct: 481 ELINLMGGDITVTSEVDFGSTFIVTINVPLVDHVEEEEA 519



 Score = 44.2 bits (103), Expect = 0.090,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 41/132 (31%), Gaps = 6/132 (4%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYG 145
           +  D  G     ++ + +  G    ++IG+   DV D        +    +L+       
Sbjct: 170 YRNDL-GLFSGCNKAMEQLTGKLEKELIGLSPKDVYDAEVAAKVIDTDRQVLQENQALTY 228

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +  L   +G       +L  +P YS++    G  GFG         +     ++  +  +
Sbjct: 229 EQWLDYPDGRKACF--ELNKIPFYSKDGRRLGLVGFG--RNITERKEYEDALQKASRDKT 284

Query: 206 HLHEIKKGHSSV 217
                       
Sbjct: 285 TFISTISHELRT 296


>gi|332712494|ref|ZP_08432420.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
 gi|332348789|gb|EGJ28403.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
          Length = 1356

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 83/398 (20%), Positives = 174/398 (43%), Gaps = 43/398 (10%)

Query: 441  RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
            +    +++  +  + +++ + +DG+ + + +G I   N A+  LF     ++L +     
Sbjct: 754  KTTTTQLQHTIAYVDAMIRSLADGLLVTDTKGKITRINPALVSLFDLGETELLGQGCQGV 813

Query: 501  LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE-EKLLSLRI------IIKKLPFSS- 552
            L           L  +   + +Q        + +   K ++  I                
Sbjct: 814  LGN-----AIANLVTLTKTNPKQVFTAEVELTNQRIGKAVATAILKDTKATDNPDSQDGF 868

Query: 553  -CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
                + + DI+  K+                  K+DF++ VSHE+RTPLT+++GF+++I+
Sbjct: 869  MGSVILIRDITFEKEV--------------DRMKTDFISTVSHELRTPLTSVMGFAKLIQ 914

Query: 612  NQ------RFGPLGNPRYIEYAN-------YIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
             +         P  + +              I   G  +  ++ND+LD++K+E+G++   
Sbjct: 915  KKLEKTLFPLIPTNDHKIQRTLKQVSENVNIIISEGERLKALINDVLDLAKLEAGRVEWK 974

Query: 659  FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718
             +P+S+ + +  AI        +  + +  S    +P+I+ D   + Q+ +N++SNA  F
Sbjct: 975  MQPLSVVDVLERAIIATTALFEQNDVELIKSIDEGLPQIIGDRDRLIQVVINLISNAAKF 1034

Query: 719  TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
            T  G  +      T   E+ + + D+G+G++  E     + F Q  N+   + +GTGLGL
Sbjct: 1035 TDKGF-VYCKVRRT-GSEITVSIIDSGIGISEAEQTLIFEKFKQAGNTLTEKPQGTGLGL 1092

Query: 779  PLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
            P+ K +V+ + G+ ++ S   KG+      P+   S P
Sbjct: 1093 PICKEIVEHHQGQIWVESELGKGSNFSFSLPISVESEP 1130


>gi|332527595|ref|ZP_08403642.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax benzoatilyticus
            JA2]
 gi|332111998|gb|EGJ11975.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax benzoatilyticus
            JA2]
          Length = 1425

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 122/643 (18%), Positives = 219/643 (34%), Gaps = 57/643 (8%)

Query: 209  EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
            ++   +  V +   +           +    V       A+  D   T +     + E +
Sbjct: 371  DLDGRYLFVNRIACERSGLSREQLIGQRDVDVFPPDTAAAYAADDRLTLRDGNAMTFEQT 430

Query: 269  LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
            +P       + + +   +   G +      + +  + R          E E       + 
Sbjct: 431  MPTPNGVLHLAVTKAPLRDGDGRIVGLVGVASDLTALR---RGEQALRESEARFRSVFEV 487

Query: 329  CPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAG----GLSTLLDAPKLSDNNAIKP 383
                  V +  G++  ANP+   L   + V  +        G   + ++ + S     + 
Sbjct: 488  LNEGIVVRAPDGSIVDANPAAERLL-LQPVQALRGRRLDELGWEPVNESGEPSPEGLQRL 546

Query: 384  VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN-QFPENMPQNGIEPEDVDTRI 442
              +  +   C  A  R   ++        +        +      +       +  + R 
Sbjct: 547  TEVITASGECRDAEVR---VRAPDGRQRWLRVNAEPVRDPDDGRLIAVVASWDDVTERRE 603

Query: 443  NKRKMEIEVMQLCSIL-------------------------EATSDGIAIINREGIILST 477
               ++    + L  ++                         ++    +A  +R+      
Sbjct: 604  TTEELRRHRLHLQQLVEERTLELKHAIAGLAEAERSARMIADSLPGLVAYWDRQMRCRFA 663

Query: 478  NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
            NR     FG   E I+    T  L           +         Q  E+       E +
Sbjct: 664  NRGYCDWFGMSQEQIIGLSMTELLGPEFVRTQADLIRAAF-GGELQQYERSAPSRGGEPQ 722

Query: 538  LLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKN-------KLSHAKKIAEKESSHKSDF 588
             L +  +  +        + +   DIS  K+ +        +L   +  AE  S  KS F
Sbjct: 723  DLLVHYVPDRRADGQVDGFYVMAIDISAQKRAEAGLQRANAELVVERDRAEAASRSKSAF 782

Query: 589  LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
            LA +SHEIRTP+ AIIG + ++           R ++    I      +L I+ND+LD+S
Sbjct: 783  LANISHEIRTPMNAIIGLAHLMLRDAHADTERERLLK----IRGQAQHLLQILNDVLDLS 838

Query: 649  KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIA 708
            KIE+G++ L   P SLD  ++ A   V   A  K + +         R++ D   + Q  
Sbjct: 839  KIEAGRLELEAIPFSLDTLLARAFQTVATEAQRKGLELVLDTDAVPDRLVGDPTRLLQAL 898

Query: 709  LNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIP 764
            LN+LSNA+ FT  G  + +      + E    +   V DTGVG+    L    + F Q+ 
Sbjct: 899  LNLLSNAVKFTEKG-WVRLQARQADHAEGRVLLRFTVTDTGVGIPPDRLGALFQAFEQVD 957

Query: 765  NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
            +S   R  GTGLGL L + M     G+    STP  G+     
Sbjct: 958  SSTSRRHGGTGLGLALTRHMASMMGGEVGADSTPGAGSCFWFS 1000



 Score =  122 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 52/538 (9%), Positives = 124/538 (23%), Gaps = 44/538 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +DA G L      +  T        +   +                     Q        
Sbjct: 124 LDADGQLL-----VSATPDEAPTAALRDTVRRAITTGQAQHTPMYRSGADAQALRLDIVF 178

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL---DKKFS 205
              + GT     + L   P  +      G  G+ +     +    +  G  +        
Sbjct: 179 PLKLSGTPARAAVALRQDPQQTL---LPGLTGWPLPRDGALALLWQRQGDVMHPWAGFTP 235

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH----KDDVLKTEKYPL 261
            L        +V +      +     P      + +                        
Sbjct: 236 ELQGRLPATVAVTEAGTLPLAALRGDPSALQPQRATDFRGEAVTGIVLPLGAGDWWLSLQ 295

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
           +  +    P ++                  +  +              +          L
Sbjct: 296 VDQQAIDAPARQSALAGLALLAVTLLALHAIGRSLSNRRALADAERERAEERERMRALQL 355

Query: 322 TPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
                +      F     G   + N      +       I            P  +    
Sbjct: 356 LDTVAEHAGEAIFAKDLDGRYLFVNRIACERSGLSREQLIGQRDVD----VFPPDTAAAY 411

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
                L   D   +     + T        L +        +     +   G+  +    
Sbjct: 412 AADDRLTLRDGNAMTFEQTMPTP----NGVLHLAVTKAPLRDGDGRIVGLVGVASDLTAL 467

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           R  ++ +     +  S+ E  ++GI +   +G I+  N A  +L   PV+ +  +     
Sbjct: 468 RRGEQALRESEARFRSVFEVLNEGIVVRAPDGSIVDANPAAERLLLQPVQALRGRRLDEL 527

Query: 501 LEQ---NTPSVMNHYLTEILS--LDLRQTLEKITLGSTKEEKLLSLRII--IKKLPFSSC 553
             +    +       L  +        +  +        + +   LR+     + P    
Sbjct: 528 GWEPVNESGEPSPEGLQRLTEVITASGECRDAEVRVRAPDGRQRWLRVNAEPVRDPDDGR 587

Query: 554 YSLTM---HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
               +    D++E ++   +L   +   ++    ++        E++    AI G +E
Sbjct: 588 LIAVVASWDDVTERRETTEELRRHRLHLQQLVEERTL-------ELK---HAIAGLAE 635



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/411 (7%), Positives = 80/411 (19%), Gaps = 54/411 (13%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            +  D  G    ++    +  G    ++IG R  DV              L  R      
Sbjct: 367 IFAKDLDGRYLFVNRIACERSGLSREQLIGQRDVDVFPPDTAAAYAADDRLTLRDGNAMT 426

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
                P     L++ +     P+   +    G    G+              +  + +F 
Sbjct: 427 FEQTMPTPNGVLHLAVT--KAPLRDGDGRIVGL--VGVASDLTALRRGEQALRESEARFR 482

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPP-----------HLRMKNKVSSLTEYYAHKDDVL 254
            + E+      V      I                     R+                  
Sbjct: 483 SVFEVLNEGIVVRAPDGSIVDANPAAERLLLQPVQALRGRRLDELGWEPVNESGEPSPEG 542

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
                 ++T+       +      +  Q   +     +++        +           
Sbjct: 543 LQRLTEVITASGECRDAEVRVRAPDGRQRWLRVNAEPVRDPDDGRLIAVVASWDDVTERR 602

Query: 315 ------------------------------FDEGENLTPETVDKCPIPFFVYSHG-NLFY 343
                                           E E       D  P     +       +
Sbjct: 603 ETTEELRRHRLHLQQLVEERTLELKHAIAGLAEAERSARMIADSLPGLVAYWDRQMRCRF 662

Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403
           AN  +       S + I        L       +    +  ++  +    +       + 
Sbjct: 663 ANRGYCDWFGM-SQEQIIGLSMTELL-----GPEFVRTQADLIRAAFGGEL--QQYERSA 714

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
                    +            +      +  +    +  +  ++    +L
Sbjct: 715 PSRGGEPQDLLVHYVPDRRADGQVDGFYVMAIDISAQKRAEAGLQRANAEL 765


>gi|86751212|ref|YP_487708.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris
           HaA2]
 gi|86574240|gb|ABD08797.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris
           HaA2]
          Length = 557

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 88/431 (20%), Positives = 169/431 (39%), Gaps = 39/431 (9%)

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
            ++  R D +       L  +                     PE +       +  + + 
Sbjct: 26  ELIARRKDGSEFPIEIMLSPL-------------------DSPEGVLVTAAIRDISERKD 66

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            ++ +     +  ++LEA  D + ++N+ G I+  N    K F Y  +++L +  T  + 
Sbjct: 67  AEKHLVQMEGRYQALLEAAPDAMVVVNQTGEIVLLNLQAEKQFAYRRDELLGQKVTNIIP 126

Query: 503 QNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSCYSLT--M 558
           +     +           L Q +       G  K+     + I++  L       +T  +
Sbjct: 127 EGFAERLIADRLRSREDALAQHIGAGIELTGRRKDGSEFPIEIMLSPLESEGSILVTAAI 186

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            +IS  K  +                + +F+A VSHE+RTPLT+I G   ++  Q  G  
Sbjct: 187 REISARKHME--------------RLRDEFVATVSHELRTPLTSISGSLGLLVGQWVGIF 232

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
             P          ++   ++ ++ND+LDI K+  G++  +   V +   V +AI   + +
Sbjct: 233 PEPAAR-LVAIAYKNSQRLVRLINDILDIEKLGDGRVVFNLCRVDVHAIVEQAIESNRGF 291

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738
           A    + +  + A+    + AD   + Q+  N+LSNAI  +P G  ++++        V 
Sbjct: 292 AEGYGVNVGLTTASRSSDVNADPDRLAQVITNLLSNAIKASPPGRDVLVAVEPHD-AFVR 350

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           + VRD G G+         + F Q   +   +  GTGLGL + K +V+   G+       
Sbjct: 351 ISVRDQGDGIPATFRLHIFEKFAQADATDARQKGGTGLGLSIVKQIVERLNGRVSFEDAA 410

Query: 799 AKGTLIEIIFP 809
             GT+  +  P
Sbjct: 411 GGGTVFCVDLP 421



 Score = 45.4 bits (106), Expect = 0.035,   Method: Composition-based stats.
 Identities = 12/82 (14%), Positives = 25/82 (30%), Gaps = 3/82 (3%)

Query: 506 PSVMNHYLTEILSLDLRQTL-EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT--MHDIS 562
             ++   L        +Q       +   K+     + I++  L       +T  + DIS
Sbjct: 3   ERLIADKLRTAEDARTQQIGTGIELIARRKDGSEFPIEIMLSPLDSPEGVLVTAAIRDIS 62

Query: 563 EWKQEKNKLSHAKKIAEKESSH 584
           E K  +  L   +   +     
Sbjct: 63  ERKDAEKHLVQMEGRYQALLEA 84


>gi|13937003|gb|AAK50005.1|AF361475_1 double histidine kinase DhkD [Dictyostelium discoideum]
          Length = 1546

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 90/407 (22%), Positives = 158/407 (38%), Gaps = 31/407 (7%)

Query: 439 DTRINKRKMEIEVMQLCSI----------LEATSDGIAIINREGIILSTNRAVSKLFGYP 488
           D    + ++  E+  L ++          L+     +A+++  G +L  N    +  G  
Sbjct: 42  DHEKTREELIEEINHLRAVSNSNKNARIMLDEMYQFVALLDVNGNLLDVNEPALQGGGMI 101

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEI---LSLDLRQTLEKITLGSTKEEKLLSLRIII 545
              I   PF       T       + E     S       E    G +   + +++   +
Sbjct: 102 RSSIQGIPFWDCSRWATSQENIDNVREAVHKASKGEFIRYETEIFGKSAGTEKITIDFSL 161

Query: 546 KKLPFSSCYSLTM----HDISEWKQEKNKLSHAKKIAE-------KESSHKSDFLARVSH 594
             L         +     +I+E +  + ++               +    K+ F A VSH
Sbjct: 162 MPLFNDKGEVSLILPEGRNITEKRLGELEIERKNNELRSLYEKIKELDELKTQFFANVSH 221

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           E+RTPL  I+G ++ +       +      +    + R+   +L IVN+LLDIS++E+GK
Sbjct: 222 ELRTPLALIVGPTDKLLKDENVDIN---VRKDLEIVARNARGLLKIVNNLLDISRLEAGK 278

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714
           MNL++  V+L + V    S  ++ A EK +       +       D   ++++  N++SN
Sbjct: 279 MNLNYSMVNLGQTVHLIASCFEILAREKSLDFSIITPSEPMMAAIDADKMQRVITNLISN 338

Query: 715 AIHFTPSGGQIIISTTHTS----NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           A  FTPSGG +                 + V DTG G+ +   E   + F Q+  S   +
Sbjct: 339 AFKFTPSGGAVKCILEKFDLSPNKPGFQIVVSDTGPGIPDNLHEIIFERFRQVDGSSTRK 398

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
             GTGLGL + K  V  + G   I +    G    +  PL      H
Sbjct: 399 HGGTGLGLSIVKEFVTLHGGTVTIHNISTGGAQFTLRLPLTPNMDEH 445



 Score =  236 bits (601), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 60/283 (21%), Positives = 111/283 (39%), Gaps = 42/283 (14%)

Query: 570  KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK-----------NQRFGPL 618
            +L   + +    +  K +F   +SHE+RTPL  I+G+ +++                   
Sbjct: 726  ELEKERNLLNNTNKSKDEFFMNLSHELRTPLNGILGWCQLLLYDIDSGGSSGGGSGSISG 785

Query: 619  GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
             +         I+R  +    ++NDLLD+S I   K +L    V L   +  AIS + + 
Sbjct: 786  DDSTVRTGLETIERCASSQNQLINDLLDMSLIIGDKFSLILGDVDLPILIENAISSILVT 845

Query: 679  ANEKRILIRTSFANN-------IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT- 730
            A  K+I + ++           +  I+ D   ++Q+  N+LSN+I FT   G+I ++   
Sbjct: 846  AQSKKISVHSNIQGEGEEESSILRNIVGDKARLQQVIWNLLSNSIKFTKEKGRIHLNLKV 905

Query: 731  ----------------------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
                                     +  ++  + D G G+    L      F Q   S  
Sbjct: 906  VNQIPSREVLGFCSNPMFNTINRHGDRWILFTITDNGKGIPKQFLPSVFDRFKQADCSST 965

Query: 769  IRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFPL 810
                G G+GL + + ++  + G  Y  S    KG+   ++ P+
Sbjct: 966  RSYGGLGIGLSITQNIIHLHKGAVYANSEGENKGSQFTVVLPI 1008


>gi|209919677|ref|YP_002293761.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli SE11]
 gi|209912936|dbj|BAG78010.1| two-component sensor kinase [Escherichia coli SE11]
          Length = 949

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 99/495 (20%), Positives = 186/495 (37%), Gaps = 41/495 (8%)

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
             P+   +             + LT  +S    +                    + ++L 
Sbjct: 239 TLPMGVTILDENGHT-----LISLTGPESKIKGDPRWMQERSWFGY----TEGFRELVLK 289

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV---DTRINK 444
           ++      +      +    E    +              +       E         + 
Sbjct: 290 KNLPPSSLSIVYSVPVDKVLERIRMLILNAILLNVLAGAALFTLARMYERRIFIPAESDA 349

Query: 445 RKMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            ++E        I+ +   GI I+   +G+ + +N            +  ++        
Sbjct: 350 LRLEEHEQFNRKIVASAPVGICILRTADGVNILSNELAHTYLNMLTHEDRQR-------- 401

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                    LT+I+       ++      T     L +  +  +    +     + D+S 
Sbjct: 402 ---------LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSS 448

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + +  L    + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R 
Sbjct: 449 RVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR- 506

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
                 ++ S +L+L I++D+LD SKIES ++ +     S  E ++   +        K+
Sbjct: 507 --LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQ 564

Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           + +      ++P  +  D   ++Q+  N+LSNAI FT +G  I++       + + +RVR
Sbjct: 565 LGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG-CIVLHVR-ADGDYLSIRVR 622

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTGVG+   E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+
Sbjct: 623 DTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGS 682

Query: 803 LIEIIFPLYDTSHPH 817
              +  PLY   +P 
Sbjct: 683 QFTVRIPLYGAQYPQ 697


>gi|116620474|ref|YP_822630.1| multi-sensor hybrid histidine kinase [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116223636|gb|ABJ82345.1| multi-sensor hybrid histidine kinase [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 940

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 101/753 (13%), Positives = 220/753 (29%), Gaps = 69/753 (9%)

Query: 106 IGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIE---------GTN 156
            G  + +     L D+  I+   P+      +     +     L             GT 
Sbjct: 81  TGVSSEESFRRGLVDLWPIMADLPDRRKRLHITPPYIYTNHNLLLRPGSARPERDFNGTI 140

Query: 157 LYVPIDLAALPIYSRNREFSGFRGFGIVHVN-------RVDNDPRALGKRLDKKFSHLHE 209
            Y  + L    +++   + +                   VD         L +      E
Sbjct: 141 AYFKLPLHLRLVHAAFPQ-AHLVPVADFRHVIQAVCKGTVDLGFLEDRAALAELRDRPPE 199

Query: 210 IKKGHSSVEK--EKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
            +     VE   E        S     R  +++            +  T         + 
Sbjct: 200 CESIALRVEPLPEMRLPLGVASTFECARAADRLRGEIGKMFSDGTLAATMAKYSYYGLDD 259

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQ-NNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
           +                     G L    +   ++  S R      +     E       
Sbjct: 260 TWSTYALMEASE-RARWVAWIAGLLGLVLAVILWQAASLRQRKRSESALRASEERFRAIF 318

Query: 327 DKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
           ++  +    V   G +   N  +  +  Y   + +         L      D+     + 
Sbjct: 319 NQAAVGDAQVTLDGQVTMVNDRYCEVLGYGREELLGQP------LAGKIHPDDRETLLLN 372

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
             R     + + +           ++ +        +          +  +  + R  + 
Sbjct: 373 RRRLLDQVVPSYSVEVRSVLQGGETVWIKLYESLLRDAENRPQYSLAVVEDITERRQAET 432

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            ++    +  S+ +     I +   +      ++   +  G  +ED L   +   +   +
Sbjct: 433 ALQESERRFRSMADTAPVMIWVAGADQRCTFFSQGWLRFTGSSMEDALGNGWVEHIHPES 492

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDI 561
             +         +   + + +        + +   +         +      Y  +  DI
Sbjct: 493 RELCQANFNSAFAT--QSSFQTECRLRRADGEYRWVLATGTPRFGADGAFAGYVGSCTDI 550

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           ++ K  + +      +A ++          ++H+    L +I+  SE++ ++        
Sbjct: 551 TDIKNAQVE-----ALARQKLEGLGVLAGGIAHDFNNLLGSILATSELVLSELPDGTP-- 603

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
              E    I    +   +IV  ++  S    G+ N  FE + L   V E + L+ +    
Sbjct: 604 -ASEGIISIKNVADRAAEIVRQMMAYS----GQENTIFEALDLSVLVREMLQLLSVSI-S 657

Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF-TPSGGQIIISTTH--------- 731
           KR  +      N+P I A+   ++Q+ +N+++NA      S G I +   H         
Sbjct: 658 KRAHLVVDLPENLPAIRANPAQLRQVVMNLITNASEALGESSGVITVGLAHVRPAAPRPA 717

Query: 732 ------TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
                 T    V L V D+G GMT     +   PF         +  G GLGL   + ++
Sbjct: 718 GHPAEITETGHVRLTVADSGSGMTEEIRARIFDPFFTT------KFAGRGLGLAAVRGII 771

Query: 786 DANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
             + G   +FS P +G+  E++ P  D   P +
Sbjct: 772 RDHGGSISVFSVPGQGSRFEVVLPCTDRPTPSN 804



 Score = 68.5 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 32/374 (8%), Positives = 83/374 (22%), Gaps = 27/374 (7%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151
            G +  +++   + +G    +++G  L         +        L  Q        +  
Sbjct: 331 DGQVTMVNDRYCEVLGYGREELLGQPLAGKIHPDDRETLLLNRRRLLDQVVPSYSVEVRS 390

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
           +      V I L    +              +V             +  +++F  + +  
Sbjct: 391 VLQGGETVWIKLYESLLRDAENRPQ--YSLAVVEDITERRQAETALQESERRFRSMADTA 448

Query: 212 KGHSSVEKEKYD---IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT-SEES 267
                V                     M++ + +    + H +     +       + +S
Sbjct: 449 PVMIWVAGADQRCTFFSQGWLRFTGSSMEDALGNGWVEHIHPESRELCQANFNSAFATQS 508

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
           S   +      +                      Y+      +     D           
Sbjct: 509 SFQTECRLRRADGEYRWVLATGTPRFGADGAFAGYVGSCTDIT-----DIKNAQVEALAR 563

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
           +      V + G     N     +                  L   +L D       ++ 
Sbjct: 564 QKLEGLGVLAGGIAHDFNNLLGSILATSE-------------LVLSELPDGTPASEGIIS 610

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE---DVDTRINK 444
             +    AA      + ++ + +     +      +    +    I       VD   N 
Sbjct: 611 IKNVADRAAEIVRQMMAYSGQENTIFEALDLSVLVREMLQLLSVSISKRAHLVVDLPENL 670

Query: 445 RKMEIEVMQLCSIL 458
             +     QL  ++
Sbjct: 671 PAIRANPAQLRQVV 684


>gi|333001362|gb|EGK20930.1| sensor kinase protein rcsC [Shigella flexneri VA-6]
          Length = 949

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 99/495 (20%), Positives = 186/495 (37%), Gaps = 41/495 (8%)

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
             P+   +             + LT  +S    +                    + ++L 
Sbjct: 239 TLPMGVTILDENGHT-----LISLTGPESKIKGDPRWMQERSWFGY----TEGFRELVLK 289

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV---DTRINK 444
           ++      +      +    E    +              +       E         + 
Sbjct: 290 KNLPPSSLSIVYSVPVDKVLERIRMLILNAILLNVLAGAALFTLARMYERRIFIPAESDA 349

Query: 445 RKMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            ++E        I+ +   GI I+   +G+ + +N            +  ++        
Sbjct: 350 LRLEEHEQFNRKIVASAPVGICILRTADGVNILSNELAHTYLNMLTHEDRQR-------- 401

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                    LT+I+       ++      T     L +  +  +    +     + D+S 
Sbjct: 402 ---------LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSS 448

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + +  L    + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R 
Sbjct: 449 RVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR- 506

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
                 ++ S +L+L I++D+LD SKIES ++ +     S  E ++   +        K+
Sbjct: 507 --LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQ 564

Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           + +      ++P  +  D   ++Q+  N+LSNAI FT +G  I++       + + +RVR
Sbjct: 565 LGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG-CIVLHVR-ADGDYLSIRVR 622

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTGVG+   E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+
Sbjct: 623 DTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGS 682

Query: 803 LIEIIFPLYDTSHPH 817
              +  PLY   +P 
Sbjct: 683 QFTVRIPLYGAQYPQ 697


>gi|26248607|ref|NP_754647.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli CFT073]
 gi|227887276|ref|ZP_04005081.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli 83972]
 gi|312967520|ref|ZP_07781735.1| sensor kinase protein rcsC [Escherichia coli 2362-75]
 gi|331647873|ref|ZP_08348965.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
           C) [Escherichia coli M605]
 gi|331658298|ref|ZP_08359260.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
           C) [Escherichia coli TA206]
 gi|26109012|gb|AAN81215.1|AE016763_174 Sensor protein rcsC [Escherichia coli CFT073]
 gi|227835626|gb|EEJ46092.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli 83972]
 gi|307554285|gb|ADN47060.1| capsular synthesis regulator component C [Escherichia coli ABU
           83972]
 gi|312287717|gb|EFR15622.1| sensor kinase protein rcsC [Escherichia coli 2362-75]
 gi|331043597|gb|EGI15735.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
           C) [Escherichia coli M605]
 gi|331056546|gb|EGI28555.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
           C) [Escherichia coli TA206]
          Length = 949

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 99/495 (20%), Positives = 186/495 (37%), Gaps = 41/495 (8%)

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
             P+   +             + LT  +S    +                    + ++L 
Sbjct: 239 TLPMGVTILDENGHT-----LISLTGPESKIKGDPRWMQERSWFGY----TEGFRELVLK 289

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV---DTRINK 444
           ++      +      +    E    +              +       E         + 
Sbjct: 290 KNLPPSSLSIVYSVPVDKVLERIRMLILNAILLNVLAGAALFTLARMYERRIFIPAESDA 349

Query: 445 RKMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            ++E        I+ +   GI I+   +G+ + +N            +  ++        
Sbjct: 350 LRLEEHEQFNRKIVASAPVGICILRTADGVNILSNELAHTYLNMLTHEDRQR-------- 401

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                    LT+I+       ++      T     L +  +  +    +     + D+S 
Sbjct: 402 ---------LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSS 448

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + +  L    + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R 
Sbjct: 449 RVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR- 506

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
                 ++ S +L+L I++D+LD SKIES ++ +     S  E ++   +        K+
Sbjct: 507 --LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQ 564

Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           + +      ++P  +  D   ++Q+  N+LSNAI FT +G  I++       + + +RVR
Sbjct: 565 LGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG-CIVLHVR-ADGDYLSIRVR 622

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTGVG+   E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+
Sbjct: 623 DTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGS 682

Query: 803 LIEIIFPLYDTSHPH 817
              +  PLY   +P 
Sbjct: 683 QFTVRIPLYGAQYPQ 697


>gi|266622910|ref|ZP_06115845.1| putative His Kinase A domain protein [Clostridium hathewayi DSM
           13479]
 gi|288865336|gb|EFC97634.1| putative His Kinase A domain protein [Clostridium hathewayi DSM
           13479]
          Length = 614

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 101/498 (20%), Positives = 190/498 (38%), Gaps = 41/498 (8%)

Query: 334 FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393
            +     L +AN  +  L  +   ++ E        L         A     +  +    
Sbjct: 39  LLDESFTLVWANEFYYDLIGW-PKEEYEANFHNRPDLYYQNDQQLWAELAGTVMAALEAH 97

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
            +    +  ++    + + +                   +          +++       
Sbjct: 98  ESGYQLVTQMRKKNGDFVWVHLTTQFADEYINGYQVAYSVMTNIDKLVKMQKE------- 150

Query: 454 LCSIL-EATSDGI----AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
             S+  E+    +       +    +L  N    + FG   ED    P  +   ++   +
Sbjct: 151 -QSVTYESLPGFVAKYRIDADMNLTLLFANSRFVEYFGEGDED---NPLYLRNIEDNREI 206

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---YSLTMHDIS--- 562
           ++ Y  EIL       +  +    +++ + + L++    + + +    Y     DI+   
Sbjct: 207 ISRYREEILKGA---PVHFVISARSRDGQNMWLQVNATCIEWQNGCPVYLAIFIDITDVT 263

Query: 563 -----EWKQEK--NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
                + K  +    L  A  +AE  +  K+DFL+R+SHEIRTP+ AI+G + +      
Sbjct: 264 QLREMQRKLTEQTEALKDALAVAEHANQAKTDFLSRMSHEIRTPMNAILGMTTIAAAYID 323

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
                 R  +    I  S   ++ ++ND+LD+SKI  GK+ +  E   L+  V    S++
Sbjct: 324 ---DQRRVEDCLEKIGYSSKHLMALINDVLDMSKISEGKVRIAHEVFDLETVVESISSII 380

Query: 676 QLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTH--- 731
              A  + +  +    +    ++  D   + QI LN+LSNA+ FTP+GG + +       
Sbjct: 381 YPQAAARGLTFQVPLIDLSNTVMIGDSLRLNQILLNLLSNALKFTPAGGTVRLEIRQLQR 440

Query: 732 -TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
                 +   V DTG+GM++  LE+   PF Q  N       GTGLG+P+ K +V    G
Sbjct: 441 KEDRIRLRFTVLDTGIGMSDAFLERLFVPFEQEDNRVAQNSGGTGLGMPITKNLVTLMGG 500

Query: 791 KFYIFSTPAKGTLIEIIF 808
              + S   KGT+  I  
Sbjct: 501 TITVKSEVGKGTVFTIEL 518


>gi|269839880|ref|YP_003324573.1| PAS/PAC sensor signal transduction histidine kinase [Thermobaculum
           terrenum ATCC BAA-798]
 gi|269791610|gb|ACZ43750.1| PAS/PAC sensor signal transduction histidine kinase [Thermobaculum
           terrenum ATCC BAA-798]
          Length = 593

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 100/572 (17%), Positives = 219/572 (38%), Gaps = 38/572 (6%)

Query: 251 DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310
              +  +      S+  +  ++      ++      +    L +   +     +H + P 
Sbjct: 52  AQQVAPQLQRGDASQIDAFAKR-VGRAADVRITIIDRTGRVLGDTDHDPNTMDNHLSRPE 110

Query: 311 LSAYFDE---GENLTPETVDK--CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365
           +                T+D+    +   + S G+        +         D++ +  
Sbjct: 111 VRQALASGFGESMRHSRTLDRDLLYVAVPIGSGGDTLGVARVAM------PTSDVQASLN 164

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
               +     +    +  ++     R   +  ARL +   +         I  +  ++  
Sbjct: 165 RVVTVVGAATAIAIVLAILLALVVARATTSNIARLTSAARSMAAGQLHQRIEIDGRDETS 224

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
           E         + +D+ I    +  E  ++ ++L   +D + I N  G + + NRA  +L 
Sbjct: 225 ELASAFNEMAQSLDSYI--STINRERERMSAVLSYMADSLLITNARGEVQAMNRAAEQLL 282

Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
               +D+  +     +  +  + +      +      +    + LGS    +L+      
Sbjct: 283 DVREQDVRGRSVMAVIRDHELAGLVR--RALEMQGPVRLPRLLELGSDGNRRLIDALASP 340

Query: 546 KKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
                 +     L + D++E ++ +                + +F+A VSHE+RTP+ A+
Sbjct: 341 IPGENGTGSQVLLLLRDVTELRRAET--------------IRQEFVANVSHELRTPVAAL 386

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
               E ++             ++   +    + +  ++ +LL++S+IESGK+ L   PV+
Sbjct: 387 KSLVETLEEGAL--EDEEVARDFLARMHVEVDKLAQLIEELLELSRIESGKVELRIHPVN 444

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
           L E V      ++  A  + + +  +        LAD   ++Q+ +N++ NAI FTP GG
Sbjct: 445 LVEVVRAGAERLRPQAERQGVDLEVTVEQPEILALADPERIQQVVINLVHNAIKFTPPGG 504

Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
           +I +   ++ + EV + V+DTGVG+    L++  + F ++   +     GTGLGL +AK 
Sbjct: 505 RITVRV-YSLDREVAVTVQDTGVGIEPELLDRLFERFFKVD--RARSAGGTGLGLAIAKH 561

Query: 784 MVDANMGKFYIFST-PAKGTLIEIIFPLYDTS 814
           +V A+ G+ +  S    KG       P    +
Sbjct: 562 LVLAHRGRIWAESEGMGKGARFTFTLPAVGAA 593



 Score = 44.6 bits (104), Expect = 0.064,   Method: Composition-based stats.
 Identities = 27/261 (10%), Positives = 60/261 (22%), Gaps = 9/261 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            +A G ++ ++    + +      + G  +  V     +     +   L+ Q        
Sbjct: 265 TNARGEVQAMNRAAEQLLDVREQDVRGRSVMAVIRDHEL--AGLVRRALEMQGPVR-LPR 321

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           L  +        ID  A PI   N   +G +   ++           + +      SH  
Sbjct: 322 LLELGSDGNRRLIDALASPIPGENG--TGSQVLLLLRDVTELRRAETIRQEFVANVSHEL 379

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
                      E  +  + +          ++    +  A   + L           E  
Sbjct: 380 RTPVAALKSLVETLEEGALEDEEVARDFLARMHVEVDKLAQLIEELLELSRIESGKVELR 439

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
           +        +       +        + + + E                  NL    +  
Sbjct: 440 IHPVNLVEVVRAGAERLRPQAERQGVDLEVTVEQPEILALADPERIQQVVINLVHNAIKF 499

Query: 329 CPIP----FFVYSHGNLFYAN 345
            P        VYS        
Sbjct: 500 TPPGGRITVRVYSLDREVAVT 520


>gi|20260804|gb|AAK54092.2|AF362373_1 histidine kinase DhkL [Dictyostelium discoideum]
          Length = 1709

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 86/361 (23%), Positives = 157/361 (43%), Gaps = 23/361 (6%)

Query: 458  LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
            +E + D + I +  G I   N A S++ G+   ++L K F+  +     + +   +   L
Sbjct: 708  IENSPDCVEIWDPSGHIQYLNLAFSEMTGFARWELLGKEFSNLI---DNTEIIPNMWATL 764

Query: 518  SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM----HDISEWKQEKNKLSH 573
            +     T             L+     I  +       L       D+++ + ++   + 
Sbjct: 765  TDKK--TWNGFIRTRHNNNTLIYFEASISPVLDQFQQILYYNCTKRDVTQKRIDEESKTL 822

Query: 574  AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
             +    ++S  +   L+ +SH+IRTP++ IIG ++++ +       +     Y   I  S
Sbjct: 823  EQNKIIEKSRLR---LSMMSHDIRTPMSNIIGMADLLLDTSL----SQHQHHYLEIIKNS 875

Query: 634  GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693
             N +L I+ND+LDISKIE+GK+++ +E    +  VS+ +  +      K + + +     
Sbjct: 876  SNTLLTIINDILDISKIEAGKLDIDYESFDFNATVSQVVESMAQRVQSKGLELLSYVDPK 935

Query: 694  IPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDTGVGM 748
            IP IL      + QI  N+L N++ FT  G +I I            E+ + VRDTG+G+
Sbjct: 936  IPNILIGPSSRLNQILTNLLGNSLKFTDKG-EISICCLLNDETDSEYEIKVDVRDTGIGI 994

Query: 749  TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA-NMGKFYIFSTPAKGTLIEII 807
                L    K F Q   +   +  G+GLGL + K +V     G+  + S    G+    I
Sbjct: 995  KKEALPLLFKAFTQAEGTITRQYGGSGLGLAICKELVHLAFNGEISVESQYGHGSTFTCI 1054

Query: 808  F 808
             
Sbjct: 1055 L 1055



 Score = 48.5 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/133 (13%), Positives = 43/133 (32%), Gaps = 8/133 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            W  D  G+++ ++    +  G   ++++G    ++ D   I PN  +   L  + TW G
Sbjct: 717 IW--DPSGHIQYLNLAFSEMTGFARWELLGKEFSNLIDNTEIIPN--MWATLTDKKTWNG 772

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
                    T +Y   + +  P+  + ++   +                        K  
Sbjct: 773 FIRTRHNNNTLIYF--EASISPVLDQFQQILYYN--CTKRDVTQKRIDEESKTLEQNKII 828

Query: 206 HLHEIKKGHSSVE 218
               ++    S +
Sbjct: 829 EKSRLRLSMMSHD 841


>gi|78356407|ref|YP_387856.1| GAF sensor hybrid histidine kinase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78218812|gb|ABB38161.1| GAF sensor hybrid histidine kinase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 974

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 107/580 (18%), Positives = 200/580 (34%), Gaps = 63/580 (10%)

Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTK 353
                         S     +E        ++      ++     G     N        
Sbjct: 132 VGNRLVRYELALDISDIRTAEEEMRRFRMALEASSDAVYLTDLRTGLFVDVNSRAYTQLG 191

Query: 354 YKSVDDIEIAG----------GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403
           Y   + + +            GL   L       +           D T +     L  +
Sbjct: 192 YTREEILGMRPEDINIAVSEHGLEPYLRNVLDGRDEGAVETYHRHKDGTLLPVEVGLRRL 251

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME-IEVMQLCSILEATS 462
                  L        +      ++    +    + T   +   +   +  + + LE+  
Sbjct: 252 TTVSSELLVSVARDISERRDAQRDLATRLMYERVLSTCARELLSQFSSLNAMHTTLESLR 311

Query: 463 DGIAI---------INREG------IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
           + + +         IN +G           +  V+  FG    ++   P+     +   +
Sbjct: 312 ETVDVCRVYIFENFINDDGQLCCRHRFEVCSEGVASQFGKS--ELECVPYLPAFSRWAQT 369

Query: 508 V---------MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM 558
           +         ++ +  E   L   Q ++ I +   K        I          ++   
Sbjct: 370 LEQGKALSGLVDEFPEEEQPLLRAQDIQSILVLPLKVGGQWWGLIGFDDTRTMRRWTQLD 429

Query: 559 HDI-----------SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
             +            E  + + +L    + AE  S  KS+FLA +SHEIRTPL AIIG +
Sbjct: 430 EQLLMTAAEIIAAAIERNRAQKQLEKTSREAEAASRSKSEFLANMSHEIRTPLNAIIGLT 489

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
           E+   +           E       S   +LDIVND+LD++++ESGK++L     SL   
Sbjct: 490 ELSLQEDL----PEGVGENLRASLSSAEALLDIVNDILDLARVESGKLHLEEVEFSLPRF 545

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQ-I 725
           +   + +++  A  K +         +P  ++ D   ++QI +N++ NAI FT  GG  +
Sbjct: 546 LGGVMRVMRHEAERKGLDFSMFLGRGLPRELMGDSGRLRQILVNLIGNAIKFTEEGGVNV 605

Query: 726 IISTTHTSNEE------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
            +    +S         V   V+DTG+G+  +      + F Q   S   +  GTGLGL 
Sbjct: 606 AVECVSSSGGYIAGVQRVRFTVQDTGIGIPEHLHGIIFENFRQADGSITRKYGGTGLGLT 665

Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819
           +++ +V+   G   + S   KG+  E+  P +  +  H C
Sbjct: 666 ISRQLVEMMGGSISLRSEAGKGSRFEVELP-FKVAETHAC 704



 Score = 48.9 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/298 (9%), Positives = 84/298 (28%), Gaps = 27/298 (9%)

Query: 66  NYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL 125
             L++ +  V+    RT          G   +++      +G    +++GMR  D++  +
Sbjct: 160 MALEASSDAVYLTDLRT----------GLFVDVNSRAYTQLGYTREEILGMRPEDINIAV 209

Query: 126 ---HIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFG 182
               ++P   + ++L  ++    +T     +GT   +P+++    + + + E        
Sbjct: 210 SEHGLEPY--LRNVLDGRDEGAVETYHRHKDGTL--LPVEVGLRRLTTVSSELL----VS 261

Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS 242
           +        D +            L    +   S       + +            +V  
Sbjct: 262 VARDISERRDAQRDLATRLMYERVLSTCARELLSQFSSLNAMHTTLESLRETVDVCRVYI 321

Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302
              +      +    ++ + +   +S   + +   +       +           E  + 
Sbjct: 322 FENFINDDGQLCCRHRFEVCSEGVASQFGKSELECVPYLPAFSRWAQT------LEQGKA 375

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDI 360
           LS                   +++   P+       G + + +   +          +
Sbjct: 376 LSGLVDEFPEEEQPLLRAQDIQSILVLPLKVGGQWWGLIGFDDTRTMRRWTQLDEQLL 433


>gi|293405685|ref|ZP_06649677.1| hybrid sensory kinase [Escherichia coli FVEC1412]
 gi|298381367|ref|ZP_06990966.1| two-component system [Escherichia coli FVEC1302]
 gi|291427893|gb|EFF00920.1| hybrid sensory kinase [Escherichia coli FVEC1412]
 gi|298278809|gb|EFI20323.1| two-component system [Escherichia coli FVEC1302]
          Length = 949

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 99/495 (20%), Positives = 186/495 (37%), Gaps = 41/495 (8%)

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
             P+   +             + LT  +S    +                    + ++L 
Sbjct: 239 TLPMGVTILDENGHT-----LISLTGPESKIKGDPRWMQERSWFGY----TEGFRELVLK 289

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV---DTRINK 444
           ++      +      +    E    +              +       E         + 
Sbjct: 290 KNLPPSSLSIVYSVPVDKVLERIRMLILNAILLNVLAGAALFTLARMYERRIFIPAESDA 349

Query: 445 RKMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            ++E        I+ +   GI I+   +G+ + +N            +  ++        
Sbjct: 350 LRLEEHEQFNRKIVASAPVGICILRTADGVNILSNELAHTYLNMLTHEDRQR-------- 401

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                    LT+I+       ++      T     L +  +  +    +     + D+S 
Sbjct: 402 ---------LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSS 448

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + +  L    + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R 
Sbjct: 449 RVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR- 506

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
                 ++ S +L+L I++D+LD SKIES ++ +     S  E ++   +        K+
Sbjct: 507 --LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQ 564

Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           + +      ++P  +  D   ++Q+  N+LSNAI FT +G  I++       + + +RVR
Sbjct: 565 LGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG-CIVLHVR-ADGDYLSIRVR 622

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTGVG+   E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+
Sbjct: 623 DTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGS 682

Query: 803 LIEIIFPLYDTSHPH 817
              +  PLY   +P 
Sbjct: 683 QFTVRIPLYGAQYPQ 697


>gi|254498687|ref|ZP_05111405.1| hypothetical protein LDG_3661 [Legionella drancourtii LLAP12]
 gi|254352135|gb|EET10952.1| hypothetical protein LDG_3661 [Legionella drancourtii LLAP12]
          Length = 508

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 83/512 (16%), Positives = 191/512 (37%), Gaps = 30/512 (5%)

Query: 312 SAYFDEGENLTPETVDKCPI--PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
           S    E EN     +D       F +   GN+   N     L  Y   + I     +   
Sbjct: 8   SKALTESENRYRMILDGIKDYAIFMLTPSGNVKSWNIGAQRLEGYAEREIIGKPFSI--F 65

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
             A  +++      + + +              ++ +  +  A   +     +   + + 
Sbjct: 66  YTAEDIANKVPEHYLKIAKKQGR---YEEDNIRVRKDGSHFWA-KILVEALYDSDEKLVG 121

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
              I  +  + +  +   +         +   S G+A+++ EG  L+ N+A+  + GY  
Sbjct: 122 FVNITRDITERKAQEETTKASEETFRLAMHYASIGMALVSTEGKWLNVNQALLNMMGYSE 181

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
           E+ L   F      +       YL  +L+ ++    +       K   ++   + +  L 
Sbjct: 182 EEFLAMDFQTITHPDDLKKDLGYLVRMLNKEID-NYQMEKRYFHKNGHIIWGLLDVSLLW 240

Query: 550 FSSC----YSLTMHDISEWKQEKNKLSHAK-------KIAEKESSHKSDFLARVSHEIRT 598
                   +   + +I+  K+ +      +       K     ++    F    SH+++ 
Sbjct: 241 NMDGTPKYFISQVQNITARKKAEAANKKTEAANKKLMKALANSNAELERFAYVASHDLQE 300

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
           P+  I  F E++  ++   L +    EY   +  +G  + D++NDLL  S++    +   
Sbjct: 301 PIRMINNFGELLLAEKQTELDDE-AKEYLRIMTNAGIRMRDVINDLLAYSRVSKQTI--- 356

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718
           F   + +E +  A+  ++    E++  I     + +P +  +   + ++  N+L+NAI +
Sbjct: 357 FVRFNGEEILQNALQNIKTLVEEQKAQIT---QDPLPILYGNPMQIMRLLQNLLTNAIKY 413

Query: 719 TPSGGQIIISTTHTSNEE-VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
              G    I        E   L ++D G+G+    +++  +PF ++        +G+GLG
Sbjct: 414 QRKGNTPDIHIGLEDQGENWRLSIKDNGLGIEEQFIDEIFEPFRRLH--TWESIKGSGLG 471

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           L + K + + + G   + S    G++  +  P
Sbjct: 472 LSICKKIAEIHGGTLSVTSIIGSGSVFFLTIP 503



 Score = 55.0 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 43/375 (11%), Positives = 98/375 (26%), Gaps = 30/375 (8%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID--PNNHIGDLLKRQNTW 143
            + +   G +K  +    +  G    ++IG           I      H   + K+Q  +
Sbjct: 30  IFMLTPSGNVKSWNIGAQRLEGYAEREIIGKPFSIFYTAEDIANKVPEHYLKIAKKQGRY 89

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                    +G++ +  I + AL  Y  + +  GF    I              K  ++ 
Sbjct: 90  EEDNIRVRKDGSHFWAKILVEAL--YDSDEKLVGF--VNITRDITERKAQEETTKASEET 145

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLKTEK-- 258
           F           ++   +    +             +  ++   +   H DD+ K     
Sbjct: 146 FRLAMHYASIGMALVSTEGKWLNVNQALLNMMGYSEEEFLAMDFQTITHPDDLKKDLGYL 205

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
             +L  E  +   ++ +   N +          L N       ++S   + +     +  
Sbjct: 206 VRMLNKEIDNYQMEKRYFHKNGHIIWGLLDVSLLWNMDGTPKYFISQVQNITARKKAEAA 265

Query: 319 ENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
              T                     AN   +      + +    A   S  L  P    N
Sbjct: 266 NKKTEA-------------------ANKKLMKALANSNAELERFAYVASHDLQEPIRMIN 306

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
           N  + ++  +       A   L  +         +       +    + +       E +
Sbjct: 307 NFGELLLAEKQTELDDEAKEYLRIMTNAGIRMRDVINDLLAYSRVSKQTIFVRFNGEEIL 366

Query: 439 DTRINKRKMEIEVMQ 453
              +   K  +E  +
Sbjct: 367 QNALQNIKTLVEEQK 381


>gi|260462410|ref|ZP_05810618.1| histidine kinase [Mesorhizobium opportunistum WSM2075]
 gi|259031904|gb|EEW33172.1| histidine kinase [Mesorhizobium opportunistum WSM2075]
          Length = 602

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 113/370 (30%), Positives = 174/370 (47%), Gaps = 15/370 (4%)

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
            +L  I++A    +  + R G +L  +     L   P E +    F   +  +       
Sbjct: 204 DRLEDIIDAV---VLRVARHGEVLDASARARTLLKLPPELLSGTGFFDRVHLSDRVAYLS 260

Query: 512 YLTEILSLDLRQTLEKITLG----------STKEEKLLSLRIIIKKLPFSSCYS-LTMHD 560
            L ++    L + LE                   +      + + +         L + +
Sbjct: 261 ALADMRDGALSRRLELRIRLPQNGNGQGDNRLMADNYRPFALELVRGEEQGDVFTLVLRE 320

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
             E  + + +L+ A + A      K  FLA VSHE+RTPL AIIGFS+++ ++ FG   +
Sbjct: 321 NDETARLREELAQANEAAAAAEVAKGRFLAVVSHELRTPLNAIIGFSDMLLHEMFGAFKD 380

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
           PR  EY   +  SG  +L +V  +LD+S+IESG      EP    EAV    S+++L A 
Sbjct: 381 PRQKEYVGLVRDSGQHLLAVVTSILDVSRIESGAYATEPEPFRFMEAVEMCQSMMRLQAQ 440

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
            K I ++T  A +   I AD R+V+QI +N++SNA+ FTP GG +++         +   
Sbjct: 441 AKNIDLQTQIAPDAGDINADRRAVQQILINLVSNAVKFTPDGGDVVVGAKRI-GSRLHFW 499

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           VRDTG+G+   +     KPF QI N    R EGTGLGL L K +V  + G   I S P +
Sbjct: 500 VRDTGIGIAEEDFANLGKPFMQIQNDYTRRFEGTGLGLSLVKGLVALHEGTMSIESMPGE 559

Query: 801 GTLIEIIFPL 810
           GT + I  P+
Sbjct: 560 GTTVTISLPV 569


>gi|194433290|ref|ZP_03065570.1| sensor histidine kinase/response regulator RcsC [Shigella
           dysenteriae 1012]
 gi|194418384|gb|EDX34473.1| sensor histidine kinase/response regulator RcsC [Shigella
           dysenteriae 1012]
          Length = 949

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 99/495 (20%), Positives = 186/495 (37%), Gaps = 41/495 (8%)

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
             P+   +             + LT  +S    +                    + ++L 
Sbjct: 239 TLPMGVTILDENGHT-----LISLTGPESKIKGDPRWMQERSWFGY----TEGFRELVLK 289

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV---DTRINK 444
           ++      +      +    E    +              +       E         + 
Sbjct: 290 KNLPPSSLSIVYSVPVDKVLERIRMLILNAILLNVLAGAALFTLARMYERRIFIPAESDA 349

Query: 445 RKMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            ++E        I+ +   GI I+   +G+ + +N            +  ++        
Sbjct: 350 LRLEEHEQFNRKIVASAPVGICILRTADGVNILSNELAHTYLNMLTHEDRQR-------- 401

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                    LT+I+       ++      T     L +  +  +    +     + D+S 
Sbjct: 402 ---------LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSS 448

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + +  L    + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R 
Sbjct: 449 RVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR- 506

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
                 ++ S +L+L I++D+LD SKIES ++ +     S  E ++   +        K+
Sbjct: 507 --LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQ 564

Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           + +      ++P  +  D   ++Q+  N+LSNAI FT +G  I++       + + +RVR
Sbjct: 565 LGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG-CIVLHVR-ADGDYLSIRVR 622

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTGVG+   E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+
Sbjct: 623 DTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGS 682

Query: 803 LIEIIFPLYDTSHPH 817
              +  PLY   +P 
Sbjct: 683 QFTVRIPLYGAQYPQ 697


>gi|26986877|ref|NP_742302.1| multi-sensor signal transduction histidine kinase [Pseudomonas
           putida KT2440]
 gi|24981479|gb|AAN65766.1|AE016202_9 sensory box histidine kinase [Pseudomonas putida KT2440]
          Length = 593

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 92/427 (21%), Positives = 174/427 (40%), Gaps = 28/427 (6%)

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK--R 445
            + R      A         + +  +T  P  +A +  +   + G+  + +         
Sbjct: 191 IARRFGQPIEALAKAADQLGKGNFDVTL-PVTQAAELNQLTRRFGLMADALRKHQATNVD 249

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           ++     +L ++L++  DG+ II+R+G +   N    +  G+    +             
Sbjct: 250 ELLAGQQRLQAVLDSIDDGLLIIDRQGRLEHLNPVAQRQLGWNDSRLGSSLVEALQRPEL 309

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISE 563
              +   L           L        +E +LL+  +     P        + +HD++E
Sbjct: 310 EQQLRQVLRGGSLDRPPDDLNMEV---DEESRLLTYSLTPVSHPQGPILGAVMVLHDVTE 366

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            +  +                +S+F+ R SHE+RTP+T  +  +  +  +R       R 
Sbjct: 367 QRAFE--------------RVRSEFVLRASHELRTPVTG-MHMAFGLLRERVKFPPEARE 411

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            +    I      +  ++NDLL+ S+ +SG   L   P ++D+ +  A S     A  K+
Sbjct: 412 NDLLETIGEEMQRLTQLINDLLNFSRYQSGLQKLELAPCAIDDLLDHAQSRFAEQAAHKQ 471

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
           I +       +PRI AD+  + ++  N+L NAI  T +GG+I +       E VI+ V D
Sbjct: 472 IELIKELDPPLPRIQADVAQLDRVLDNLLHNAIRHTANGGRIRLH-ARRHAERVIISVED 530

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
            G G++  +  +  +PF Q+      +  G GLGL L K +V  + G+  +FS P +GT 
Sbjct: 531 NGEGISYGQQARIFEPFVQV----GRKKGGAGLGLALCKEIVQLHGGRMGVFSRPGQGTQ 586

Query: 804 IEIIFPL 810
             +  P+
Sbjct: 587 FYMALPV 593



 Score = 40.8 bits (94), Expect = 0.92,   Method: Composition-based stats.
 Identities = 24/270 (8%), Positives = 68/270 (25%), Gaps = 11/270 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G L+ ++    + +G    + +G  L +      ++        + R  +      
Sbjct: 272 IDRQGRLEHLNPVAQRQLGWNDSR-LGSSLVEALQRPELEQQ---LRQVLRGGSLDRPPD 327

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
              +E       +  +  P+        G     ++H          +  R +      H
Sbjct: 328 DLNMEVDEESRLLTYSLTPVSHPQGPILGA--VMVLHDVTEQRAFERV--RSEFVLRASH 383

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           E+ +   +     + +  ++   P    +N +         +   L  +       +   
Sbjct: 384 EL-RTPVTGMHMAFGLLRERVKFPPEARENDLLETIGEEMQRLTQLINDLLNFSRYQSGL 442

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
              +     I+      +  F     + +           P + A   + + +    +  
Sbjct: 443 QKLELAPCAIDDLLDHAQSRFAEQAAHKQIELIKELDPPLPRIQADVAQLDRVLDNLLHN 502

Query: 329 CPIPFFVYSHGNLFYANPSFLLLTKYKSVD 358
                   + G +                D
Sbjct: 503 A--IRHTANGGRIRLHARRHAERVIISVED 530


>gi|312973528|ref|ZP_07787700.1| sensor kinase protein rcsC [Escherichia coli 1827-70]
 gi|310332123|gb|EFP99358.1| sensor kinase protein rcsC [Escherichia coli 1827-70]
          Length = 949

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 99/495 (20%), Positives = 186/495 (37%), Gaps = 41/495 (8%)

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
             P+   +             + LT  +S    +                    + ++L 
Sbjct: 239 TLPMGVTILDENGHT-----LISLTGPESKIKGDPRWMQERSWFGY----TEGFRELVLK 289

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV---DTRINK 444
           ++      +      +    E    +              +       E         + 
Sbjct: 290 KNLPPSSLSIVYSVPVDKVLERIRMLILNAILLNVLAGAALFTLARMYERRIFIPAESDA 349

Query: 445 RKMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            ++E        I+ +   GI I+   +G+ + +N            +  ++        
Sbjct: 350 LRLEEHEQFNRKIVASAPVGICILRTADGVNILSNELAHTYLNMLTHEDRQR-------- 401

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                    LT+I+       ++      T     L +  +  +    +     + D+S 
Sbjct: 402 ---------LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSS 448

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + +  L    + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R 
Sbjct: 449 RVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR- 506

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
                 ++ S +L+L I++D+LD SKIES ++ +     S  E ++   +        K+
Sbjct: 507 --LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQ 564

Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           + +      ++P  +  D   ++Q+  N+LSNAI FT +G  I++       + + +RVR
Sbjct: 565 LGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG-CIVLHVR-ADGDYLSIRVR 622

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTGVG+   E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+
Sbjct: 623 DTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGS 682

Query: 803 LIEIIFPLYDTSHPH 817
              +  PLY   +P 
Sbjct: 683 QFTVRIPLYGAQYPQ 697


>gi|110642428|ref|YP_670158.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli 536]
 gi|191170203|ref|ZP_03031757.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           F11]
 gi|306814668|ref|ZP_07448830.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli NC101]
 gi|110344020|gb|ABG70257.1| sensor protein RcsC [Escherichia coli 536]
 gi|190909719|gb|EDV69304.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           F11]
 gi|305852062|gb|EFM52514.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli NC101]
          Length = 949

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 99/495 (20%), Positives = 186/495 (37%), Gaps = 41/495 (8%)

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
             P+   +             + LT  +S    +                    + ++L 
Sbjct: 239 TLPMGVTILDENGHT-----LISLTGPESKIKGDPRWMQERSWFGY----TEGFRELVLK 289

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV---DTRINK 444
           ++      +      +    E    +              +       E         + 
Sbjct: 290 KNLPPSSLSIVYSVPVDKVLERIRMLILNAILLNVLAGAALFTLARMYERRIFIPAESDA 349

Query: 445 RKMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            ++E        I+ +   GI I+   +G+ + +N            +  ++        
Sbjct: 350 LRLEEHEQFNRKIVASAPVGICILRTADGVNILSNELAHTYLNMLTHEDRQR-------- 401

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                    LT+I+       ++      T     L +  +  +    +     + D+S 
Sbjct: 402 ---------LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSS 448

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + +  L    + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R 
Sbjct: 449 RVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR- 506

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
                 ++ S +L+L I++D+LD SKIES ++ +     S  E ++   +        K+
Sbjct: 507 --LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQ 564

Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           + +      ++P  +  D   ++Q+  N+LSNAI FT +G  I++       + + +RVR
Sbjct: 565 LGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG-CIVLHVR-ADGDYLSIRVR 622

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTGVG+   E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+
Sbjct: 623 DTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGS 682

Query: 803 LIEIIFPLYDTSHPH 817
              +  PLY   +P 
Sbjct: 683 QFTVRIPLYGAQYPQ 697


>gi|317484995|ref|ZP_07943878.1| response regulator receiver domain-containing protein [Bilophila
            wadsworthia 3_1_6]
 gi|316923733|gb|EFV44936.1| response regulator receiver domain-containing protein [Bilophila
            wadsworthia 3_1_6]
          Length = 1459

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 118/775 (15%), Positives = 245/775 (31%), Gaps = 79/775 (10%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            I     L E ++   + +G       G  L  V+            +  +       +  
Sbjct: 431  IGTQLSLLEANDNFFQMLGTDRTAYKG-TLSAVAPADRGAIVTAFMEAAETDAPVDIEYR 489

Query: 149  LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                +     + I L A  + + +     ++   +          +    R   ++  + 
Sbjct: 490  CRRFDNEQT-IWIHLIARFVENAHGAKV-YQ--CVFIDITKQKTAQIQLYRERDRYRIIM 545

Query: 209  EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY--------AHKDDVLKTEKYP 260
            E           K D                   ++  +            +  +T    
Sbjct: 546  ENSADVIYEYDRKTDTVVFYETIRRGDETEIAKHVSPNFSKKLYDQKIAHPEDAETAMRV 605

Query: 261  LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
                +  S   +     IN +          +   +      +      + +    + + 
Sbjct: 606  FSGIQSGSAEVRLRNLKINGDYVWCLLQGQPVY-ENGALARVVGIIRDITENKRISQEKE 664

Query: 321  LTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
                  D          + ++   NPS      +   +        S +         + 
Sbjct: 665  RLQRIFDL----ELRRDYESICQINPSTGRYVMWTPSNASYYDIPTSGIFSEELAHAISR 720

Query: 381  -------------IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
                         +    + ++       +     +  +             +   F ++
Sbjct: 721  IVCGEDQETCLKTLSIGNMLKTLEEEKEGTCYYRVLTPDGSLRWKCA-----RYTYFGDD 775

Query: 428  MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-----GII-LSTNR-- 479
                    +  D RI +   + E  +  +IL  T + I   + E       +    NR  
Sbjct: 776  GSILLNVRDVHDIRIAQ---QQEENRFRAILRETCEYIIETDVETKSYTLHLPTLINRYP 832

Query: 480  -AVSKLFGYPVEDILRKPFTVFLEQNTPSVMN------HYLTEILSLDLRQTLEKITLGS 532
                  +G     ++ +    ++                 L+ +       +++     +
Sbjct: 833  LEACSDYG----SLIARYSERYVAPEDRESFLRAVSLPEALSRMRREGGSCSIKYTV-NT 887

Query: 533  TKEEKLLSLRIIIKKLPFSSCYSLT-MHDIS----EWKQEKNKLSHAKK-------IAEK 580
                   +  + + +   +  Y L+ + DI+    E ++++ +    ++        AE+
Sbjct: 888  NGSPAYKTWNMSLYRYDDNREYMLSYILDITKLVLEQQEKEREAERNRQIIKDALTAAEQ 947

Query: 581  ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
             S  KSDFL+R+SHEIRTP+ A+IG + +            +  +    I  S   +L +
Sbjct: 948  ASRAKSDFLSRMSHEIRTPMNAVIGMTTIAAASLD---NRDKLTDCLGKIGLSSRYLLSL 1004

Query: 641  VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILA 699
            +ND+LD+S+IESGK+++  E       V    SL+   A  K I+   +    +      
Sbjct: 1005 INDILDMSRIESGKVSIINEEFDFRSFVEGISSLIYPQAKNKNIVFDLNIEGVVDERYRG 1064

Query: 700  DLRSVKQIALNILSNAIHFTPSGGQIIISTT----HTSNEEVILRVRDTGVGMTNYELEK 755
            D   + Q+ +NILSNA+ FTP    + +S            +   VRDTG+GM    LE+
Sbjct: 1065 DPLRLNQVLINILSNALKFTPEWRSVHLSIRETRRVRDRAYLQFIVRDTGIGMEKGLLER 1124

Query: 756  AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
              +PF Q   S      G+GLGL ++  ++    G   + STP  G+   +  PL
Sbjct: 1125 IFEPFEQGGASISHSYGGSGLGLAISSNLISLMNGHISVSSTPGVGSEFVVELPL 1179



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 51/510 (10%), Positives = 132/510 (25%), Gaps = 45/510 (8%)

Query: 97  EISEELPKTIGNYAFKMIGM---RLCDVSDILHIDPNNHI-GDLLKRQNTWYGKTTLWPI 152
            ++E L + +G    +++     R+ ++     +               T+  +  +   
Sbjct: 188 YVNEGLCRMLGYTEEELMAKCRGRMTELVYPPDLPQALADCERCFANSLTYSTEYRMQRK 247

Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212
           +G  ++V    +     +   +        ++             +R    F  L++   
Sbjct: 248 DGKLIWVWDTGSKS--KNEEGK---TVINSVIVDITERRHTNDTIRRQKAFFQSLYDTTL 302

Query: 213 GHSSVEKEKYDIFSQQSPPPHLR-------MKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
                        +  +    +              SL       D     E    L ++
Sbjct: 303 CALVQYDLNGTFLNANAFTFDVIGYTEEQFRTETGGSLMSIVHPCDVDTVREHIERLIAD 362

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
                        +            + N         ++ +           E     T
Sbjct: 363 RRPTVYNCRIIRRDGAVRWVCASANIINNMDGVPVIQAAYSDVT----ELQRVERERDST 418

Query: 326 VDKCPIP---FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
            D  P       + +  +L  AN +F  +            G LS    AP         
Sbjct: 419 YDSIPGGVAKVLIGTQLSLLEANDNFFQMLGTDRTAY---KGTLSA--VAPADRGAIVTA 473

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
            +    +D             +++ E ++ +  I     N     + Q     +    + 
Sbjct: 474 FMEAAETD---APVDIEYRCRRFDNEQTIWIHLIARFVENAHGAKVYQCVFI-DITKQKT 529

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILRK---PFT 498
            + ++  E  +   I+E ++D I   +R+   ++        +      +I +     F+
Sbjct: 530 AQIQLYRERDRYRIIMENSADVIYEYDRKTDTVVF----YETIRRGDETEIAKHVSPNFS 585

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS--TKEEKLLSLRIIIKKLPFSS---C 553
             L     +      T +      Q+                +   +  + +  +     
Sbjct: 586 KKLYDQKIAHPEDAETAMRVFSGIQSGSAEVRLRNLKINGDYVWCLLQGQPVYENGALAR 645

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
               + DI+E K+   +    ++I + E  
Sbjct: 646 VVGIIRDITENKRISQEKERLQRIFDLELR 675



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/287 (9%), Positives = 75/287 (26%), Gaps = 14/287 (4%)

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN---LFYANPSFLL 350
              ++    +  +++  L     E                          LFY N     
Sbjct: 136 QEGEDFPAQIGRQSYEYLQRLLVEKSRQIALLNSTVSSGLKANWDDEYYSLFYVNEGLCR 195

Query: 351 LTKYKSVDDIEI-AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
           +  Y   + +    G ++ L+  P L    A        S     +   R+         
Sbjct: 196 MLGYTEEELMAKCRGRMTELVYPPDLPQALADCERCFANSL--TYSTEYRMQR---KDGK 250

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469
            + +     +  N+  + +  N +  +  + R     +  +     S+ + T   +   +
Sbjct: 251 LIWVWDTGSKSKNEEGKTV-INSVIVDITERRHTNDTIRRQKAFFQSLYDTTLCALVQYD 309

Query: 470 REGIILSTNRAVSKLFGYPVEDIL---RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
             G  L+ N     + GY  E             +       +  ++  +++        
Sbjct: 310 LNGTFLNANAFTFDVIGYTEEQFRTETGGSLMSIVHPCDVDTVREHIERLIADRRPTVYN 369

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSCYS-LTMHDISEWKQEKNKLS 572
              +      + +     I               D++E ++ + +  
Sbjct: 370 CRIIRRDGAVRWVCASANIINNMDGVPVIQAAYSDVTELQRVERERD 416



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 47/515 (9%), Positives = 126/515 (24%), Gaps = 43/515 (8%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKM---IGMRLCDVSDILHIDPNNH-IGDLLKRQNTWYG 145
           D +G     +      IG    +     G  L  +     +D     I  L+  +     
Sbjct: 309 DLNGTFLNANAFTFDVIGYTEEQFRTETGGSLMSIVHPCDVDTVREHIERLIADRRPTVY 368

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN-RVDNDPRALGKRLDKKF 204
              +   +G      +  +A  I + +       G  ++        + + + +  D  +
Sbjct: 369 NCRIIRRDG--AVRWVCASANIINNMD-------GVPVIQAAYSDVTELQRVERERDSTY 419

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPP-HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
             +           +      +                +L+         + T       
Sbjct: 420 DSIPGGVAKVLIGTQLSLLEANDNFFQMLGTDRTAYKGTLSAVAPADRGAIVTAFMEAAE 479

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF---EYLSHRNHPSLSAYFDEGEN 320
           ++     E       N            ++N          ++      +         +
Sbjct: 480 TDAPVDIEYRCRRFDNEQTIWIHLIARFVENAHGAKVYQCVFIDITKQKTAQIQLYRERD 539

Query: 321 LTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
                ++      + Y            +       +           L D       +A
Sbjct: 540 RYRIIMENSADVIYEYDRKTDTVVFYETIRRGDETEIAKHVSPNFSKKLYDQKIAHPEDA 599

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
              + ++   ++  +A  RL  ++ N +    +        N         GI  +  + 
Sbjct: 600 ETAMRVFSGIQSG-SAEVRLRNLKINGDYVWCLLQGQPVYENGA--LARVVGIIRDITEN 656

Query: 441 RINKRKMEIEVMQLCSILE----ATSDGIAIINRE-GIILSTNRAVSKLFGYPV----ED 491
           +     +  E  +L  I +       + I  IN   G  +    + +  +  P      +
Sbjct: 657 KR----ISQEKERLQRIFDLELRRDYESICQINPSTGRYVMWTPSNASYYDIPTSGIFSE 712

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI------TLGSTKEEKLLSLRIII 545
            L    +  +           L  +   ++ +TLE+           T +  L       
Sbjct: 713 ELAHAISRIVCGEDQETC---LKTLSIGNMLKTLEEEKEGTCYYRVLTPDGSLRWKCARY 769

Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
                     L + D+ + +  + +  +  +   +
Sbjct: 770 TYFGDDGSILLNVRDVHDIRIAQQQEENRFRAILR 804


>gi|194436320|ref|ZP_03068422.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           101-1]
 gi|253772858|ref|YP_003035689.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|194425048|gb|EDX41033.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           101-1]
 gi|253323902|gb|ACT28504.1| histidine kinase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|323961524|gb|EGB57132.1| RcsC Alpha-Beta-Loop [Escherichia coli H489]
 gi|323973081|gb|EGB68275.1| RcsC Alpha-Beta-Loop [Escherichia coli TA007]
          Length = 949

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 99/495 (20%), Positives = 186/495 (37%), Gaps = 41/495 (8%)

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
             P+   +             + LT  +S    +                    + ++L 
Sbjct: 239 TLPMGVTILDENGHT-----LISLTGPESKIKGDPRWMQERSWFGY----TEGFRELVLK 289

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV---DTRINK 444
           ++      +      +    E    +              +       E         + 
Sbjct: 290 KNLPPSSLSIVYSVPVDKVLERIRMLILNAILLNVLAGAALFTLARMYERRIFIPAESDA 349

Query: 445 RKMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            ++E        I+ +   GI I+   +G+ + +N            +  ++        
Sbjct: 350 LRLEEHEQFNRKIVASAPVGICILRTADGVNILSNELAHTYLNMLTHEDRQR-------- 401

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                    LT+I+       ++      T     L +  +  +    +     + D+S 
Sbjct: 402 ---------LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSS 448

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + +  L    + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R 
Sbjct: 449 RVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR- 506

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
                 ++ S +L+L I++D+LD SKIES ++ +     S  E ++   +        K+
Sbjct: 507 --LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQ 564

Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           + +      ++P  +  D   ++Q+  N+LSNAI FT +G  I++       + + +RVR
Sbjct: 565 LGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG-CIVLHVR-ADGDYLSIRVR 622

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTGVG+   E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+
Sbjct: 623 DTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGS 682

Query: 803 LIEIIFPLYDTSHPH 817
              +  PLY   +P 
Sbjct: 683 QFTVRIPLYGAQYPQ 697


>gi|157161702|ref|YP_001459020.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli HS]
 gi|170019468|ref|YP_001724422.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli ATCC 8739]
 gi|157067382|gb|ABV06637.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           HS]
 gi|169754396|gb|ACA77095.1| integral membrane sensor hybrid histidine kinase [Escherichia coli
           ATCC 8739]
          Length = 949

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 99/495 (20%), Positives = 186/495 (37%), Gaps = 41/495 (8%)

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
             P+   +             + LT  +S    +                    + ++L 
Sbjct: 239 TLPMGVTILDENGHT-----LISLTGPESKIKGDPRWMQERSWFGY----TEGFRELVLK 289

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV---DTRINK 444
           ++      +      +    E    +              +       E         + 
Sbjct: 290 KNLPPSSLSIVYSVPVDKVLERIRMLILNAILLNVLAGAALFTLARMYERRIFIPAESDA 349

Query: 445 RKMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            ++E        I+ +   GI I+   +G+ + +N            +  ++        
Sbjct: 350 LRLEEHEQFNRKIVASAPVGICILRTADGVNILSNELAHTYLNMLTHEDRQR-------- 401

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                    LT+I+       ++      T     L +  +  +    +     + D+S 
Sbjct: 402 ---------LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSS 448

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + +  L    + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R 
Sbjct: 449 RVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR- 506

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
                 ++ S +L+L I++D+LD SKIES ++ +     S  E ++   +        K+
Sbjct: 507 --LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQ 564

Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           + +      ++P  +  D   ++Q+  N+LSNAI FT +G  I++       + + +RVR
Sbjct: 565 LGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG-CIVLHVR-ADGDYLSIRVR 622

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTGVG+   E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+
Sbjct: 623 DTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGS 682

Query: 803 LIEIIFPLYDTSHPH 817
              +  PLY   +P 
Sbjct: 683 QFTVRIPLYGAQYPQ 697


>gi|150398438|ref|YP_001328905.1| histidine kinase [Sinorhizobium medicae WSM419]
 gi|150029953|gb|ABR62070.1| histidine kinase [Sinorhizobium medicae WSM419]
          Length = 826

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 123/718 (17%), Positives = 250/718 (34%), Gaps = 37/718 (5%)

Query: 109 YAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALP- 167
              + +G    +             G  +K  +    +  +  +        + L     
Sbjct: 118 DRAEFLGHLPVETGAPQDDRDFLAFGRWVKPHSAGQLEKAIEALRAQAQSFDLVLETQRN 177

Query: 168 -IYSRNREFSGFRGFG---IVHVNRVDNDPRALGK----RLDKKFSHLHEIKKGHSSVEK 219
            +       SG R F     ++  R +     L +         F  L +     +    
Sbjct: 178 EVLEAQGRVSGGRAFVRFIALNNLRAELAELKLERDQLHASLSTFRTLLDAVDLPAWQRA 237

Query: 220 EKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTIN 279
               +    +           S               ++   + + ++  P ++   T+ 
Sbjct: 238 GDGRLEWVNAAYAKAVETPSASLAVAEERELLATAARDRIRAVATLQT--PFRDKVSTVV 295

Query: 280 LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH- 338
               T        +  +  +   +      ++            ET++    P  ++   
Sbjct: 296 RGNRTFFDVVDA-RTPAGSAGIAIDVSGIEAVREELARTLKSHAETLEHLATPVAIFDGN 354

Query: 339 GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398
             L + N +F  L     +  +E       + D  +       +               A
Sbjct: 355 QRLQFYNQAFQRLWDL-DMGFLERKPDNGEMFDRLRDGGKLPEQLNWKQWK--------A 405

Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI- 457
              ++    +    +  +P  +  +        G      +    K  +E     L  + 
Sbjct: 406 NALSVYQALDTQTDLWHLPNGQTLRVFATARPQGGATWVFENLTEKVDLETRYNTLVQVQ 465

Query: 458 ---LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
              ++  ++G+A+   +G I  +N A   ++G    +         +EQ   +  +    
Sbjct: 466 GETIDHLAEGVAVFGPDGRIRLSNPAFRAIWGINETEAQPGTHIRAIEQACLASYDQQDG 525

Query: 515 EILSLDLRQTLEKIT---LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571
                 +  + +       G  +    L L   +  LP +    LT  +I++  + +  L
Sbjct: 526 WKRFAHIITSFDDERPSSRGILELRTGLILDYAVIPLPNAQ-TMLTFVNITDSVRVERAL 584

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
           +   +   K  + K+DF+  VS+E+R+PLT IIGF++++K   FG L N R  EY ++I 
Sbjct: 585 TEKNEALRKADALKNDFVHHVSYELRSPLTNIIGFADLLKTPVFGEL-NERQAEYVDHIA 643

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
            S +L+L IVND+LD++ +++G + L    V+L + + +    +     E  + +RT   
Sbjct: 644 TSSSLLLTIVNDILDLATVDAGIVELELAEVNLIDLIDDVTQQMGDRLVESGVSLRTDAP 703

Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751
           +N+ RI AD + +KQI + +L+NA +F P G  I +        +    V DTG G+   
Sbjct: 704 DNLGRITADQQRLKQIFIKLLTNAANFAPDGSTIELKC-WREGSDFAFSVTDTGPGIPQD 762

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            L      F         +  G GLGL + ++ V  + G   I S   +GT +    P
Sbjct: 763 VLNTVFNRFE-----SYGQRGGAGLGLSIVESFVSLHHGNVSIRSKEGEGTEVTCRIP 815



 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 41/380 (10%), Positives = 97/380 (25%), Gaps = 32/380 (8%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK 146
           W     G L+ ++    K +   +  +      ++      D    +  L     T +  
Sbjct: 234 WQRAGDGRLEWVNAAYAKAVETPSASLAVAEERELLATAARDRIRAVATL----QTPFRD 289

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                + G   +  +           R  +G  G  I          R    R  K  + 
Sbjct: 290 KVSTVVRGNRTFFDVV--------DARTPAGSAGIAI--DVSGIEAVREELARTLKSHAE 339

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHL------RMKNKVSSLTEYYAHKDDVLKTEKYP 260
             E      ++      +         L       ++ K  +   +   +D     E+  
Sbjct: 340 TLEHLATPVAIFDGNQRLQFYNQAFQRLWDLDMGFLERKPDNGEMFDRLRDGGKLPEQLN 399

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKK----QYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
               + ++L   +   T     +       + F T +     ++ + +      L   ++
Sbjct: 400 WKQWKANALSVYQALDTQTDLWHLPNGQTLRVFATARPQGGATWVFENLTEKVDLETRYN 459

Query: 317 EGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
               +  ET+D       V+   G +  +NP+F  +      +     G     ++   L
Sbjct: 460 TLVQVQGETIDHLAEGVAVFGPDGRIRLSNPAFRAIWGINETEA--QPGTHIRAIEQACL 517

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
           +  +       +    T                  L + +      N             
Sbjct: 518 ASYDQQDGWKRFAHIITSFDDERPSSRGILELRTGLILDYAVIPLPNAQ-----TMLTFV 572

Query: 436 EDVDTRINKRKMEIEVMQLC 455
              D+   +R +  +   L 
Sbjct: 573 NITDSVRVERALTEKNEALR 592


>gi|298506844|gb|ADI85567.1| sensor histidine kinase response regulator, PAS and PAC
           domain-containing, putative heme-binding site [Geobacter
           sulfurreducens KN400]
          Length = 882

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 108/659 (16%), Positives = 211/659 (32%), Gaps = 63/659 (9%)

Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK-NKVSSLTEYYAHKD 251
                  L   F+   ++K        +         P         +            
Sbjct: 119 ADEREAYLLGLFNARRDLKSHSEIRTIDGKKYLLYAKPFLETNQACLRCHGNRADAPIGL 178

Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
             + +++     S  +    +     ++                +               
Sbjct: 179 QQIYSDQGGFNESAGTIRAIESIRIPLDDEFTAAFVATTASLTAAVILAGLFFFNTRLRQ 238

Query: 312 SAYF-DEGENLTPETVDKCPIPFFVY-----SHG----NLFYANPSFLLLTKYKSVDDIE 361
                 E    + E           Y       G     + +   +   ++ Y S +   
Sbjct: 239 RVRQSTEALAESEENYRHFTTLTSDYVHKCSRKGKEPYRIKWIGGALNAISGYSSEEMFA 298

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
               LS +    K     A+  +                  I    E+   +T     + 
Sbjct: 299 RGCWLSIVHPDDKHPTAEALASL-------KPGDIRDISFRIIAKDESIRWITDSCQCEQ 351

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
               + +   G   +  D +  +  + +      + + A SD I  I  +   +  N A 
Sbjct: 352 GATEDELILYGAASDTTDRKKAEALLHLT----RASVNAVSDAIFWITPDARFVDVNEAA 407

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
            +  GY  E++L +        + P V   +  E+       TL   +   TK+ +++ +
Sbjct: 408 CRTLGYSREELLNRGVFDVDPDSPPEVWAQHFPELRRQG---TLRFESRHRTKDGRIIPV 464

Query: 542 RIIIKKLPFSSCY--SLTMHDISEWKQEKNKLSHAKKIAEKES--SHKSDFLARVSHEIR 597
            I+   +   +       + DI+E K+ + +    +K                 ++H+  
Sbjct: 465 EIVANYIRHDNDEFNCAVVRDITERKRAEEEHESLEKQLLHAQKLESLGVLAGGIAHDFN 524

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
             LTAI+G ++ +   R  P       +    I+R+ N   D+   +L  S    GK   
Sbjct: 525 NILTAIVGNTD-LALMRLNPESP--VRDNLARIERAANRASDLAKQMLAYS----GKGKF 577

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
             EP+ L+  V E   ++Q+  ++K + +R +FA+++P + AD   ++QI +N++ NA  
Sbjct: 578 VIEPIDLNRLVEEMTHMLQVSISKKAV-LRFNFADSLPTVDADATQLRQIIMNLVINASE 636

Query: 718 F-TPSGGQIIIST-----------------THTSNEEVILRVRDTGVGMTNYELEKAMKP 759
                 G I IST                 +      V L V DTG GM    + K   P
Sbjct: 637 AIADKSGVIAISTGCMQCDRKYLSNAWLNESIPEGLYVWLEVADTGCGMDRETVSKIFDP 696

Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
           F         +  G GLG+     +V  + G   ++S P +GT  +++ P  D   P D
Sbjct: 697 FFTT------KFTGRGLGMAAVLGIVRGHKGAIRVYSEPGRGTTFKVLLPAGD--KPKD 747



 Score = 64.7 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 40/262 (15%), Positives = 89/262 (33%), Gaps = 29/262 (11%)

Query: 10  PEDILTSNCKGNTQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTD---QNQESVSNTN 66
           P DI   + +   +D S + I +  + E+   E+        S+ TD             
Sbjct: 323 PGDIRDISFRIIAKDESIRWITDSCQCEQGATEDELILYGAASDTTDRKKAEALLHLTRA 382

Query: 67  YLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH 126
            +++ +  +F          W I       +++E   +T+G    +++   + DV     
Sbjct: 383 SVNAVSDAIF----------W-ITPDARFVDVNEAACRTLGYSREELLNRGVFDV----D 427

Query: 127 IDPNNHIGDL----LKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFG 182
            D    +       L+RQ T   ++     +G    +P+++ A  I   N EF+      
Sbjct: 428 PDSPPEVWAQHFPELRRQGTLRFESRHRTKDGRI--IPVEIVANYIRHDNDEFN----CA 481

Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS 242
           +V             + L+K+  H  +++          +D  +  +          +  
Sbjct: 482 VVRDITERKRAEEEHESLEKQLLHAQKLESLGVLAGGIAHDFNNILTAIVGN-TDLALMR 540

Query: 243 LTEYYAHKDDVLKTEKYPLLTS 264
           L      +D++ + E+     S
Sbjct: 541 LNPESPVRDNLARIERAANRAS 562


>gi|320196090|gb|EFW70714.1| Two-component sensor protein RcsC [Escherichia coli WV_060327]
          Length = 949

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 99/495 (20%), Positives = 186/495 (37%), Gaps = 41/495 (8%)

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
             P+   +             + LT  +S    +                    + ++L 
Sbjct: 239 TLPMGVTILDENGHT-----LISLTGPESKIKGDPRWMQERSWFGY----TEGFRELVLK 289

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV---DTRINK 444
           ++      +      +    E    +              +       E         + 
Sbjct: 290 KNLPPSSLSIVYSVPVDKVLERIRMLILNAILLNVLAGAALFTLARMYERRIFIPAESDA 349

Query: 445 RKMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            ++E        I+ +   GI I+   +G+ + +N            +  ++        
Sbjct: 350 LRLEEHEQFNRKIVASAPVGICILRTADGVNILSNELAHTYLNMLTHEDRQR-------- 401

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                    LT+I+       ++      T     L +  +  +    +     + D+S 
Sbjct: 402 ---------LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSS 448

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + +  L    + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R 
Sbjct: 449 RVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR- 506

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
                 ++ S +L+L I++D+LD SKIES ++ +     S  E ++   +        K+
Sbjct: 507 --LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQ 564

Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           + +      ++P  +  D   ++Q+  N+LSNAI FT +G  I++       + + +RVR
Sbjct: 565 LGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG-CIVLHVR-ADGDYLSIRVR 622

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTGVG+   E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+
Sbjct: 623 DTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGS 682

Query: 803 LIEIIFPLYDTSHPH 817
              +  PLY   +P 
Sbjct: 683 QFTVRIPLYGAQYPQ 697


>gi|298482642|ref|ZP_07000826.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
 gi|298271105|gb|EFI12682.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
          Length = 637

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 119/515 (23%), Positives = 190/515 (36%), Gaps = 27/515 (5%)

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
           S    E        +    I  + Y    G   ++N  F  L   K    I         
Sbjct: 16  SELIRENSQEILSVLAAHQIALWEYDIITGKCSFSNDYFFTL-GLKDAGIIFEDIDDFYR 74

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
              P+  +        +  SD        R+  I    +           K +       
Sbjct: 75  FIHPEDIEFYKQAFAEMLSSDSKTS--QIRVRCISEQGKVIWLEDHFLSYKESCESHPGK 132

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
                         ++ ++        I+EA  + I I +    I     A   +  +PV
Sbjct: 133 LLAYTVNVTSQCEKEQHIKYLEEYNRKIIEALPEFIFIFDDNFFITDVLMAPGTILLHPV 192

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
           E +               +    + E L     + +E        +  L   +  I    
Sbjct: 193 EVLRGADGRSIYSPEVSDLFICNIRECLRDGKLKEIEYPLEV---DGSLHYFQARIAPFE 249

Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
             +     +HDI +  Q   +L  AK+ AE     KS FLA +SHEIRTPL AI+GFSE+
Sbjct: 250 -GNRVLALIHDIGDRIQRSQELIEAKRRAEDADKMKSVFLANMSHEIRTPLNAIVGFSEI 308

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           I             +EY   I R+ NL+L ++ND+LD+S+IESGK  +HF+ V +   V 
Sbjct: 309 IA----VTESEEEKMEYLEIIQRNSNLLLQLINDILDLSRIESGKSEMHFQQVEIAGLVE 364

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
           E   + QL      + ++            D   V Q+  N LSNAI  T  G  I +  
Sbjct: 365 EVEKVHQLKMKS-NVELKVIRPEGEYWTSTDRNRVMQVLFNFLSNAIKNTEKGS-ITLGL 422

Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
            H     + L V DTG G++  +L +    F ++        +GTGLGL + K++V+   
Sbjct: 423 KHE-GPWLKLYVSDTGCGISKEKLPQIFTRFEKL----NDFVQGTGLGLSICKSIVERLG 477

Query: 790 GKFYIFSTPAKGTLIEIIFP-------LYDTSHPH 817
           G+  + S   +G++  +  P       + +   PH
Sbjct: 478 GRIEVTSELGQGSMFALYLPYQEIPKEVAERRLPH 512


>gi|254183746|ref|ZP_04890338.1| sensory box histidine kinase [Burkholderia pseudomallei 1655]
 gi|184214279|gb|EDU11322.1| sensory box histidine kinase [Burkholderia pseudomallei 1655]
          Length = 821

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 98/632 (15%), Positives = 209/632 (33%), Gaps = 26/632 (4%)

Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE 245
             R   D  A   + D          +     ++ +     +            + S   
Sbjct: 191 EIRKQFDALATLVQGDAVQQQRLATLRMLLEKKQHELAATIELRKTEGFDAAQAIVSSDA 250

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
                D           T ++     ++                G L      SF Y+  
Sbjct: 251 GKIFMDRARVMVNEMEATVQQQLRTLRDRARATRDIAIGVGLASGLLTLAVCVSFGYVMR 310

Query: 306 RNHPSLSAYFD---EGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIE 361
           R     +A      E   L   T+             G + + N     +T   +   + 
Sbjct: 311 RLLLVEAAAAHDLFEQRELLHVTLASIGDGVIATDVGGRITFFNRVAEEMTALCADAVVG 370

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                  L+     +      P  +    R   +  A    +  +    L +        
Sbjct: 371 QPIE-RVLMFRHATTQRVIDNPARVAVERRRTASLPAHTRFVGRSGGE-LPVDGNAAPTF 428

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
           +   + +    I  +  +    + +  +        +EA    + ++ R+G I+  N   
Sbjct: 429 DANGKLVGAVLIVRDVSERERAEERFRLA-------VEAAPTAMIMVGRDGRIVLVNSQA 481

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLL 539
            KLFGY   D++     + + +   +    +          + +   +   G  ++    
Sbjct: 482 EKLFGYARGDMIGHGIDMLVPERFRAGHWAHRDAFFGNPDARPMGEGRDLFGLRRDGSEF 541

Query: 540 SLRIIIKKLPFSSCYSLT--MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
            + I +  +  S    +   + DI+  K+ + +L    +   + +     F    SH+++
Sbjct: 542 PVEIGLNPITTSEGAFVLCSIADITARKRAELELRRRSEELARSNQDLEQFAYVASHDLQ 601

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
            PL A+ G  ++++ +  G L + R  E+  +       +  +++DLL  S++  G++  
Sbjct: 602 EPLRAVAGPLQLLQRRYQGQL-DARADEFIGHAVDGATRMQSLIDDLLSYSRV--GRLED 658

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
              PV  +  + EA+  +     E    +       +P +      +  +  N++ NAI 
Sbjct: 659 ARRPVDCEHVLDEALRNLSAAIRESGAQVTHD---PLPTVHGIEAQLVLLFQNLIGNAIK 715

Query: 718 FTPSGGQIIIST-THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
           F        I    HT ++  +LRVRD G+G+     E+    F ++    +    GTGL
Sbjct: 716 FRGKDRVARIHLEAHTRDDAWLLRVRDNGIGIDPQYFERIFLIFQRLH--TRREYPGTGL 773

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           GL L K +V+ + G+ ++ S P +GT      
Sbjct: 774 GLALCKRIVEHHGGRIFVESEPGQGTTFSFTL 805



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 33/353 (9%), Positives = 76/353 (21%), Gaps = 19/353 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL----KRQNTWY 144
           +   G +  ++ +  K  G     MIG  +  +        +    D        +    
Sbjct: 468 VGRDGRIVLVNSQAEKLFGYARGDMIGHGIDMLVPERFRAGHWAHRDAFFGNPDARPMGE 527

Query: 145 GKTTL-WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
           G+       +G+    P+++   PI +    F        +             +R  ++
Sbjct: 528 GRDLFGLRRDGS--EFPVEIGLNPITTSEGAFV----LCSIADITARKRAELELRRRSEE 581

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
            +  ++  +  + V         +    P   ++ +     +  A +      +    + 
Sbjct: 582 LARSNQDLEQFAYVASHDLQEPLRAVAGPLQLLQRRYQGQLDARADEFIGHAVDGATRMQ 641

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYF---GTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
           S    L        +   +            L+N S    E  +   H  L         
Sbjct: 642 SLIDDLLSYSRVGRLEDARRPVDCEHVLDEALRNLSAAIRESGAQVTHDPLPTVHGIEAQ 701

Query: 321 LTPETVDKCPIPFFVYSHGNL-----FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
           L     +             +              L + +             +    + 
Sbjct: 702 LVLLFQNLIGNAIKFRGKDRVARIHLEAHTRDDAWLLRVRDNGIGIDPQYFERIFLIFQR 761

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
                  P                   I    E     TF          E  
Sbjct: 762 LHTRREYPGTGLGLALCKRIVEHHGGRIFVESEPGQGTTFSFTLSRPGADETR 814



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/308 (9%), Positives = 68/308 (22%), Gaps = 25/308 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI----GDLLKRQNTWY 144
            D  G +   +    +     A  ++G  +  V    H      I       ++R+ T  
Sbjct: 344 TDVGGRITFFNRVAEEMTALCADAVVGQPIERVLMFRHATTQRVIDNPARVAVERRRTAS 403

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNR---VDNDPRALGKRLD 201
                  +  +   +P+D  A P +  N +  G     IV          +   L     
Sbjct: 404 LPAHTRFVGRSGGELPVDGNAAPTFDANGKLVGA--VLIVRDVSERERAEERFRLAVEAA 461

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
                +         V  +   +F            + +        H          P 
Sbjct: 462 PTAMIMVGRDGRIVLVNSQAEKLFGYARGDMIGHGIDMLVPERFRAGHWAHRDAFFGNPD 521

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
                            + +++  +     +  +       L      +     +     
Sbjct: 522 ARPMGEGR--DLFGLRRDGSEFPVEIGLNPITTSEGAF--VLCSIADITARKRAELELRR 577

Query: 322 TPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
             E + +                   F  +  +   + +    G   LL        +A 
Sbjct: 578 RSEELARSNQDL------------EQFAYVASHDLQEPLRAVAGPLQLLQRRYQGQLDAR 625

Query: 382 KPVMLYRS 389
               +  +
Sbjct: 626 ADEFIGHA 633


>gi|229074769|ref|ZP_04207788.1| hypothetical protein bcere0024_13240 [Bacillus cereus Rock4-18]
 gi|229096068|ref|ZP_04227042.1| hypothetical protein bcere0020_13170 [Bacillus cereus Rock3-29]
 gi|229115025|ref|ZP_04244436.1| hypothetical protein bcere0017_13200 [Bacillus cereus Rock1-3]
 gi|228668441|gb|EEL23872.1| hypothetical protein bcere0017_13200 [Bacillus cereus Rock1-3]
 gi|228687360|gb|EEL41264.1| hypothetical protein bcere0020_13170 [Bacillus cereus Rock3-29]
 gi|228708367|gb|EEL60521.1| hypothetical protein bcere0024_13240 [Bacillus cereus Rock4-18]
          Length = 591

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 81/371 (21%), Positives = 154/371 (41%), Gaps = 39/371 (10%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            ++ E  QL SIL + +DG+  +N+EG ++  N           E+       + L +  
Sbjct: 249 ALQQEKEQLASILSSMADGVITLNQEGEVVVINPPAENFLQVWQEEK-----EIELSKKL 303

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
           PS +      ++  + +Q +E        +   + L   +            + D++E +
Sbjct: 304 PSELVELFHRVVESEQQQVVEINLQ----KGNYVVLMTPLYNQTKIRGAVAVLRDMTEER 359

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + +                + DF+A VSHE+RTP+  + G+SE I +            E
Sbjct: 360 RLE--------------KMRQDFIANVSHELRTPMVMLQGYSEAILDDIVQT--KEEINE 403

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           +   I      +  +VN+LLD++++ESG + LH   V +   V +     Q  A +K + 
Sbjct: 404 FVQIIYDESVRLGKLVNELLDLARMESGHVELHIGEVDIHPFVEKIGRKFQGIAKDKEVE 463

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +   F + I +   D   ++Q+  N++ NAI  T +GG + +   HT N  +   V+D+G
Sbjct: 464 LTVDFQSPIEQYPFDADRMEQVLTNLIDNAIRHTNAGGHVAL-VIHTENNGLTFEVQDSG 522

Query: 746 VGMTNYELEKAMKPFGQIPNSQQI-------RGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
            G+   ++      F +   ++          G        +AK +V  + GK  + S  
Sbjct: 523 AGIPEEDIPFLFDRFYKADKARTRGKKGGTGLGL------AIAKNIVQGHDGKISVSSVV 576

Query: 799 AKGTLIEIIFP 809
            +GT   +  P
Sbjct: 577 GEGTTFSVYLP 587


>gi|121597261|ref|YP_990084.1| sensory box histidine kinase [Burkholderia mallei SAVP1]
 gi|238563116|ref|ZP_00439398.2| sensory box histidine kinase [Burkholderia mallei GB8 horse 4]
 gi|251766917|ref|ZP_04819875.1| sensory box histidine kinase [Burkholderia mallei PRL-20]
 gi|254176051|ref|ZP_04882709.1| sensory box histidine kinase [Burkholderia mallei ATCC 10399]
 gi|254200388|ref|ZP_04906753.1| sensory box histidine kinase [Burkholderia mallei FMH]
 gi|254204412|ref|ZP_04910765.1| sensory box histidine kinase [Burkholderia mallei JHU]
 gi|254301655|ref|ZP_04969099.1| sensory box histidine kinase [Burkholderia pseudomallei 406e]
 gi|121225059|gb|ABM48590.1| sensory box histidine kinase [Burkholderia mallei SAVP1]
 gi|147748000|gb|EDK55075.1| sensory box histidine kinase [Burkholderia mallei FMH]
 gi|147753998|gb|EDK61062.1| sensory box histidine kinase [Burkholderia mallei JHU]
 gi|157810685|gb|EDO87855.1| sensory box histidine kinase [Burkholderia pseudomallei 406e]
 gi|160697093|gb|EDP87063.1| sensory box histidine kinase [Burkholderia mallei ATCC 10399]
 gi|238521351|gb|EEP84803.1| sensory box histidine kinase [Burkholderia mallei GB8 horse 4]
 gi|243064372|gb|EES46558.1| sensory box histidine kinase [Burkholderia mallei PRL-20]
          Length = 821

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 98/632 (15%), Positives = 209/632 (33%), Gaps = 26/632 (4%)

Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE 245
             R   D  A   + D          +     ++ +     +            + S   
Sbjct: 191 EIRKQFDALATLVQGDAVQQQRLATLRMLLEKKQHELAATIELRKTEGFDAAQAIVSSDA 250

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
                D           T ++     ++                G L      SF Y+  
Sbjct: 251 GKIFMDRARVMVNEMEATVQQQLRTLRDRARATRDIAIGVGLASGLLTLAVCVSFGYVMR 310

Query: 306 RNHPSLSAYFD---EGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIE 361
           R     +A      E   L   T+             G + + N     +T   +   + 
Sbjct: 311 RLLLVEAAAAHDLFEQRELLHVTLASIGDGVIATDVGGRITFFNRVAEEMTALCADAVVG 370

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                  L+     +      P  +    R   +  A    +  +    L +        
Sbjct: 371 QPIE-RVLMFRHATTQRVIDNPARVAVERRRTASLPAHTRFVGRSGGE-LPVDGNAAPTF 428

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
           +   + +    I  +  +    + +  +        +EA    + ++ R+G I+  N   
Sbjct: 429 DANGKLVGAVLIVRDVSERERAEERFRLA-------VEAAPTAMIMVGRDGRIVLVNSQA 481

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLL 539
            KLFGY   D++     + + +   +    +          + +   +   G  ++    
Sbjct: 482 EKLFGYARGDMIGHGIDMLVPERFRAGHWAHRDAFFGNPDARPMGEGRDLFGLRRDGSEF 541

Query: 540 SLRIIIKKLPFSSCYSLT--MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
            + I +  +  S    +   + DI+  K+ + +L    +   + +     F    SH+++
Sbjct: 542 PVEIGLNPITTSEGAFVLCSIADITARKRAELELRRRSEELARSNQDLEQFAYVASHDLQ 601

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
            PL A+ G  ++++ +  G L + R  E+  +       +  +++DLL  S++  G++  
Sbjct: 602 EPLRAVAGPLQLLQRRYQGQL-DARADEFIGHAVDGATRMQSLIDDLLSYSRV--GRLED 658

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
              PV  +  + EA+  +     E    +       +P +      +  +  N++ NAI 
Sbjct: 659 ARRPVDCEHVLDEALRNLSAAIRESGAQVTHD---PLPTVHGIEAQLVLLFQNLIGNAIK 715

Query: 718 FTPSGGQIIIST-THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
           F        I    HT ++  +LRVRD G+G+     E+    F ++    +    GTGL
Sbjct: 716 FRGKDRVARIHLEAHTRDDAWLLRVRDNGIGIDPQYFERIFLIFQRLH--TRREYPGTGL 773

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           GL L K +V+ + G+ ++ S P +GT      
Sbjct: 774 GLALCKRIVEHHGGRIFVESEPGQGTTFSFTL 805



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 33/353 (9%), Positives = 76/353 (21%), Gaps = 19/353 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL----KRQNTWY 144
           +   G +  ++ +  K  G     MIG  +  +        +    D        +    
Sbjct: 468 VGRDGRIVLVNSQAEKLFGYARGDMIGHGIDMLVPERFRAGHWAHRDAFFGNPDARPMGE 527

Query: 145 GKTTL-WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
           G+       +G+    P+++   PI +    F        +             +R  ++
Sbjct: 528 GRDLFGLRRDGS--EFPVEIGLNPITTSEGAFV----LCSIADITARKRAELELRRRSEE 581

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
            +  ++  +  + V         +    P   ++ +     +  A +      +    + 
Sbjct: 582 LARSNQDLEQFAYVASHDLQEPLRAVAGPLQLLQRRYQGQLDARADEFIGHAVDGATRMQ 641

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYF---GTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
           S    L        +   +            L+N S    E  +   H  L         
Sbjct: 642 SLIDDLLSYSRVGRLEDARRPVDCEHVLDEALRNLSAAIRESGAQVTHDPLPTVHGIEAQ 701

Query: 321 LTPETVDKCPIPFFVYSHGNL-----FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
           L     +             +              L + +             +    + 
Sbjct: 702 LVLLFQNLIGNAIKFRGKDRVARIHLEAHTRDDAWLLRVRDNGIGIDPQYFERIFLIFQR 761

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
                  P                   I    E     TF          E  
Sbjct: 762 LHTRREYPGTGLGLALCKRIVEHHGGRIFVESEPGQGTTFSFTLSRPGADETR 814



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/308 (9%), Positives = 68/308 (22%), Gaps = 25/308 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI----GDLLKRQNTWY 144
            D  G +   +    +     A  ++G  +  V    H      I       ++R+ T  
Sbjct: 344 TDVGGRITFFNRVAEEMTALCADAVVGQPIERVLMFRHATTQRVIDNPARVAVERRRTAS 403

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNR---VDNDPRALGKRLD 201
                  +  +   +P+D  A P +  N +  G     IV          +   L     
Sbjct: 404 LPAHTRFVGRSGGELPVDGNAAPTFDANGKLVGA--VLIVRDVSERERAEERFRLAVEAA 461

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
                +         V  +   +F            + +        H          P 
Sbjct: 462 PTAMIMVGRDGRIVLVNSQAEKLFGYARGDMIGHGIDMLVPERFRAGHWAHRDAFFGNPD 521

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
                            + +++  +     +  +       L      +     +     
Sbjct: 522 ARPMGEGR--DLFGLRRDGSEFPVEIGLNPITTSEGAF--VLCSIADITARKRAELELRR 577

Query: 322 TPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
             E + +                   F  +  +   + +    G   LL        +A 
Sbjct: 578 RSEELARSNQDL------------EQFAYVASHDLQEPLRAVAGPLQLLQRRYQGQLDAR 625

Query: 382 KPVMLYRS 389
               +  +
Sbjct: 626 ADEFIGHA 633


>gi|83941860|ref|ZP_00954322.1| sensor histidine kinase/response regulator [Sulfitobacter sp.
           EE-36]
 gi|83847680|gb|EAP85555.1| sensor histidine kinase/response regulator [Sulfitobacter sp.
           EE-36]
          Length = 713

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 102/459 (22%), Positives = 193/459 (42%), Gaps = 25/459 (5%)

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHT-IQWNRENSLAMTFIPFEKANQFPENMPQNG 432
           K +D  A +       +       A L    +   +++  ++    E   +      +N 
Sbjct: 2   KPADQLAHEQRRRAEVEALLEQTQAELCAAYRKLDDHAQNVSVEISETRAEVENIRGENK 61

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
                 D    + ++E+   +L   +E   DG A  N++  ++  NR+   +F       
Sbjct: 62  RVM--SDLCAAREQIELTQRRLWHSVETIHDGFAFFNKDNEMIMANRSYLAVFDGIDAIR 119

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK-------ITLGSTKEEKLLSLRIII 545
               ++  L   T   + +           + L +         +        + +   +
Sbjct: 120 PGVSYSTILRVLTDEGIVNIGRRTPEEWRAKMLLRSQQKAPAPIIIKLWNGAYIKI---V 176

Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
            +            DI+E  + + KL  A+  AE  +S KS FLA++SHEIRTP+  I+G
Sbjct: 177 DQRGKGGDIVSLARDITETVEYQRKLVDARATAEAANSAKSLFLAKMSHEIRTPMNGIVG 236

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
            +EV+ +             Y + I  SG  +L I+ND+LD S+IE+ ++++H  P  L+
Sbjct: 237 MTEVLGDTAL----TQDQRLYVDTIKTSGEALLVIINDVLDFSRIEANRLSIHPAPFDLE 292

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ 724
               E + L+Q  A +K + +   +   +PR ++ D   ++Q+  N++ NA+ FT +G  
Sbjct: 293 RVFQEVLLLLQPLAVQKGLDLALDYDLFLPRKLVGDAGRIRQVLTNLVGNAVKFTQNGHI 352

Query: 725 IIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
           +I +T           + + + DTG+G+    +E  M  F Q  +      EGTGLGL +
Sbjct: 353 LIRATGLPDAGSGNVLIKILIEDTGIGIAPDMIEHIMGEFTQASSDPSPNAEGTGLGLAI 412

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPL---YDTSHP 816
            + +V    G+ ++ S    G+      PL    D++ P
Sbjct: 413 CQRLVQLMGGEIWVTSEHGIGSCFGFELPLKAQEDSAAP 451


>gi|255535690|ref|YP_003096061.1| two-component system sensor histidine kinase [Flavobacteriaceae
           bacterium 3519-10]
 gi|255341886|gb|ACU07999.1| two-component system sensor histidine kinase [Flavobacteriaceae
           bacterium 3519-10]
          Length = 639

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 95/626 (15%), Positives = 208/626 (33%), Gaps = 53/626 (8%)

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
           D++   +   +      +             P +R ++    L          +     P
Sbjct: 53  DEQVVQVANRQILDLWGKDAGVIGLPIIEAIPEIRNQDFPILLK--------KVYETGIP 104

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
                  +   +E   T+    +     +   + +              S     +    
Sbjct: 105 FSGDGVPATLIKEGVPTLCYFDFVYSPIYEAGKISGISVVATEVTDKVLSEKKLLESELR 164

Query: 321 LTPETV-DKCPIPFFVYSHGNLFYANPSFLLLTKYKS-------VDDIEIAGGLSTLLDA 372
                +        +      + +AN   +      S        D I    G   +   
Sbjct: 165 FKELLLVSDYSTAIYRGRDLIIEFANDQMIRSWGKNSSVIGKKLEDAIPELAGQPFV--- 221

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
             L D        + + D   +    +L T            F      +          
Sbjct: 222 QILKDIFETGKPYIAKEDEVHLDVDGKLQT--------FYFNFSYKPLRDASGGIYAIMN 273

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
           +  +  +    + K      +  ++ EA    +      G I   NR + ++     E++
Sbjct: 274 VAVDVTELVNAREKARANENEYRTLAEAMPQMVWTAVPSGKIDYCNRNMCEMLDCTAEEL 333

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS-TKEEKLLSLRIIIKKLPFS 551
               FT  +  +   +M     E    + +++ E        +  +          +  +
Sbjct: 334 AINDFTDIIHPSDLRLMKALWKEA--TEQKESFEHEYRMRDHRTGQYSWFLGTATPVMDN 391

Query: 552 SC---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                +  +  +I+E+K                 + K  FL   SHE++TPLT++  +++
Sbjct: 392 DEIVKWIGSCTNINEFKNL--------------VTQKDTFLGIASHELKTPLTSLKLYAQ 437

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
           V+  +     G+ ++ + A  +D     +  ++ DLLD++KI +GK++L+         V
Sbjct: 438 VL-ERMLAKSGDQKHADLAKKMDLQVVKLTSLIADLLDVTKINAGKIHLNEAHFDFKSLV 496

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
            E +   Q  +    I +    A     + AD   + Q+  N++SNAI ++P   +II+ 
Sbjct: 497 EETVEE-QQMSTLHTIEVE-ELAGG--MVFADKERISQVMTNLISNAIKYSPQASKIIVK 552

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
           T      +++  V D G+G+    + +  + + ++    Q    G GLGL +A  +V+ +
Sbjct: 553 TKKVD-GDLVFSVTDFGIGLPRDTMHRVFEQYYRVSAEDQNTFPGLGLGLYIAGQIVERS 611

Query: 789 MGKFYIFSTPAKGTLIEIIFPLYDTS 814
            GK ++ S   +G+      PL  +S
Sbjct: 612 NGKIWVESEIDRGSTFYFSLPLVQSS 637



 Score = 46.6 bits (109), Expect = 0.017,   Method: Composition-based stats.
 Identities = 14/119 (11%), Positives = 33/119 (27%), Gaps = 10/119 (8%)

Query: 69  DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID 128
            +EN +         +  W     G +   +  + + +   A ++      D+     + 
Sbjct: 290 ANENEYRTLAEAMP-QMVWTAVPSGKIDYCNRNMCEMLDCTAEELAINDFTDIIHPSDL- 347

Query: 129 PNNHIGDLLKRQNTWYGK----TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI 183
               +   L ++ T   +            T  Y      A P+   + E   + G   
Sbjct: 348 ---RLMKALWKEATEQKESFEHEYRMRDHRTGQYSWFLGTATPVMDND-EIVKWIGSCT 402



 Score = 46.2 bits (108), Expect = 0.025,   Method: Composition-based stats.
 Identities = 22/213 (10%), Positives = 58/213 (27%), Gaps = 14/213 (6%)

Query: 93  GY---LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI-GDLLKRQNTWYGKT- 147
           G    ++  ++++ ++ G  +  +IG +L D    L   P   I  D+ +    +  K  
Sbjct: 181 GRDLIIEFANDQMIRSWGKNSS-VIGKKLEDAIPELAGQPFVQILKDIFETGKPYIAKED 239

Query: 148 -TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                ++G       + +  P+   +          +        + R   +  + ++  
Sbjct: 240 EVHLDVDGKLQTFYFNFSYKPLRDASGGIYAIMNVAV--DVTELVNAREKARANENEYRT 297

Query: 207 LHEIKKGHSSVEKEKYDIFSQQ----SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
           L E              I                +  ++  T+     D  L    +   
Sbjct: 298 LAEAMPQMVWTAVPSGKIDYCNRNMCEMLDCTAEELAINDFTDIIHPSDLRLMKALWKEA 357

Query: 263 TSEESSLPEQEDFH-TINLNQYTKKQYFGTLQN 294
           T ++ S   +                    + +
Sbjct: 358 TEQKESFEHEYRMRDHRTGQYSWFLGTATPVMD 390


>gi|81245959|gb|ABB66667.1| sensor for ctr capsule biosynthesis [Shigella boydii Sb227]
          Length = 933

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 100/495 (20%), Positives = 186/495 (37%), Gaps = 41/495 (8%)

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
             P+   +             + LT  +S    E                    + ++L 
Sbjct: 223 TLPMGVTILDENGHT-----LISLTGPESKIKGEPRWMQERSWFGY----TEGFRELVLK 273

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV---DTRINK 444
           ++      +      +    E    +              +       E         + 
Sbjct: 274 KNLPPSSLSIVYSVPVDKVLERIRMLILNAILLNVLAGAALFTLARMYERRIFIPAESDA 333

Query: 445 RKMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            ++E        I+ +   GI I+   +G+ + +N            +  ++        
Sbjct: 334 LRLEEHEQFNRKIVASAPVGICILRTADGVNILSNELAHTYLNMLTHEDRQR-------- 385

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                    LT+I+       ++      T     L +  +  +    +     + D+S 
Sbjct: 386 ---------LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSS 432

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + +  L    + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R 
Sbjct: 433 RVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR- 490

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
                 ++ S +L+L I++D+LD SKIES ++ +     S  E ++   +        K+
Sbjct: 491 --LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQ 548

Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           + +      ++P  +  D   ++Q+  N+LSNAI FT +G  I++       + + +RVR
Sbjct: 549 LGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG-CIVLHVR-ADGDYLSIRVR 606

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTGVG+   E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+
Sbjct: 607 DTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGS 666

Query: 803 LIEIIFPLYDTSHPH 817
              +  PLY   +P 
Sbjct: 667 QFTVRIPLYGAQYPQ 681


>gi|320585939|gb|EFW98618.1| sensor histidine kinase response [Grosmannia clavigera kw1407]
          Length = 2110

 Score =  304 bits (779), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 125/757 (16%), Positives = 229/757 (30%), Gaps = 121/757 (15%)

Query: 144  YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFS-GFRGFGIVHVNRVDNDPRALGKRLDK 202
                   P +G +     +    P+         G R        +      A     + 
Sbjct: 940  SDGCATLPPDGDSNDAGTEADKEPVSPVPSNIVAGLRASLSSRTEQKVATAAA---SKEG 996

Query: 203  KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
                L       S+         S  SPP H      +   +  Y+H             
Sbjct: 997  SLDELAR--SSLSNKMFVPSPFGSGSSPPKHRHGGRSMHRYSYSYSHSQ---LHSHGADF 1051

Query: 263  TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
             +   SLP       ++           +L          +               + L 
Sbjct: 1052 ATTFPSLPPSASIKCVSAVPTASPAVTPSLLGPGVAPTSPVDMPP---------PSDRLK 1102

Query: 323  PETVDKCPIPFFVY--SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
               +D  P   FV     G + + N  +L       V+ +     +S       +  ++ 
Sbjct: 1103 GLILDSLPAHVFVAMPQTGAIVWVNSRYLAYRGQT-VESLAQDPWVS-------IHPDDR 1154

Query: 381  IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
             + +  +          +R   I+    +            ++    +   G   +  D 
Sbjct: 1155 EEYLKAWSHSVRTGDQFSRTVRIRRFDGSYRWFHARAVASRDRRNSIVQFLGSYMDIHDQ 1214

Query: 441  RINK------RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
             I +       ++E+   +   +       +   N E  +   N       G    D L 
Sbjct: 1215 HIAELKAARQEEIEVSEAKHRILANLIPQIVFTANEEEGVTFVNEQWLSYTGQSSRDALG 1274

Query: 495  KPFTVFLEQN------------TPSVMNHYLTEILSLDLRQTLEK--------------- 527
              F  F+  +                    L  +++       ++               
Sbjct: 1275 LGFMNFVHPDDLAKCTFIPVPAHLQRRRQQLRHVIASGGAGGRKRSDDSSNPSGERTPET 1334

Query: 528  --------------------------------ITLGSTKEEKLLSLRIIIKKLP------ 549
                                                 +K        +   +        
Sbjct: 1335 GNGEGLSELAELARRDIIIVTEDDNGRPSYTTEVRVRSKTGDYRWHLVRCVETGTEDFGK 1394

Query: 550  FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
              + Y  +  DI+  K  + KL       ++    K+ FL+ +SHEIRTPL  I G    
Sbjct: 1395 GRNSYFGSATDINGHKLLETKL-------KEAMDSKTRFLSNMSHEIRTPLIGISGMVSF 1447

Query: 610  IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
            +++       N    +Y N I  S + +L I+ND+LD+SK+++G M L FE       + 
Sbjct: 1448 LQDTTL----NEEQRDYTNTIQNSASSLLMIINDILDLSKVDAGMMKLSFEWFHTRSLIE 1503

Query: 670  EAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQ---- 724
            +   LV   A  K + +      ++P  +  D   ++Q+ LN++ NAI FT  G      
Sbjct: 1504 DVNELVSTMAIGKGLELNYIVEADVPGWVKGDRVRMRQVLLNVIGNAIKFTARGEVFSCC 1563

Query: 725  IIISTTHTSNEEV-ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
             ++  +   +  V    V DTG G T  E +   KPF QI  S   +  G+GLGL +++ 
Sbjct: 1564 RVVRPSPEPDRIVLEFSVTDTGQGFTKEEADLIFKPFSQIDGSSTRQHGGSGLGLVISRQ 1623

Query: 784  MVDANMGKFYIFSTPAKGTLIEII----FPLYDTSHP 816
            +V+ + GK    + P KG+          P  ++ HP
Sbjct: 1624 LVELHGGKMEGTAEPGKGSTFTFSALFGLP-TESDHP 1659


>gi|331683895|ref|ZP_08384491.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
           C) [Escherichia coli H299]
 gi|331078847|gb|EGI50049.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
           C) [Escherichia coli H299]
          Length = 949

 Score =  304 bits (779), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 99/495 (20%), Positives = 186/495 (37%), Gaps = 41/495 (8%)

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
             P+   +             + LT  +S    +                    + ++L 
Sbjct: 239 TLPMGVTILDENGHT-----LISLTGPESKIKGDPRWMQERSWFGY----TEGFRELVLK 289

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV---DTRINK 444
           ++      +      +    E    +              +       E         + 
Sbjct: 290 KNLPPSSLSIVYSVPVDKVLERIRMLILNAILLNVLAGAALFTLARMYERRIFIPAESDA 349

Query: 445 RKMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            ++E        I+ +   GI I+   +G+ + +N            +  ++        
Sbjct: 350 LRLEEHEQFNRKIVASAPVGICILRTADGVNILSNELAHTYLNMLTHEDRQR-------- 401

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                    LT+I+       ++      T     L +  +  +    +     + D+S 
Sbjct: 402 ---------LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSS 448

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + +  L    + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R 
Sbjct: 449 RVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR- 506

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
                 ++ S +L+L I++D+LD SKIES ++ +     S  E ++   +        K+
Sbjct: 507 --LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQ 564

Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           + +      ++P  +  D   ++Q+  N+LSNAI FT +G  I++       + + +RVR
Sbjct: 565 LGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG-CIVLHVR-ADGDYLSIRVR 622

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTGVG+   E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+
Sbjct: 623 DTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGS 682

Query: 803 LIEIIFPLYDTSHPH 817
              +  PLY   +P 
Sbjct: 683 QFTVRIPLYGAQYPQ 697


>gi|301022436|ref|ZP_07186318.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 69-1]
 gi|300397537|gb|EFJ81075.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 69-1]
          Length = 933

 Score =  304 bits (779), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 100/495 (20%), Positives = 187/495 (37%), Gaps = 41/495 (8%)

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
             P+   +             + LT  +S    +                    + ++L 
Sbjct: 223 TLPMGVTILDENGHT-----LISLTGPESKIKGDPRWMQERSWFGY----TEGFRELVLK 273

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV---DTRINK 444
           ++      +      +    E    +              +       E         + 
Sbjct: 274 KNLPPSSLSIVYSVPVDKVLERIRMLILNAILLNVLAGAALFTLARMYERRIFIPAESDA 333

Query: 445 RKMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            ++E        I+ +   GI I+   +G+ + +N            +  ++        
Sbjct: 334 LRLEEHEQFNRKIVASAPVGICILRTADGVNILSNELAHTYLNMLTHEDRQR-------- 385

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                    LT+I+       ++      T     L +  +  +    +     + D+S 
Sbjct: 386 ---------LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSS 432

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + +  L    + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R 
Sbjct: 433 RVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR- 490

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
                 ++ S +L+L I++D+LD SKIES ++ +     S  E ++   +        K+
Sbjct: 491 --LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQ 548

Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           + +      ++P  +  D   ++Q+  N+LSNAI FT +G  I++    T  + + +RVR
Sbjct: 549 LGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG-CIVLHVR-TDGDYLSIRVR 606

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTGVG+   E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+
Sbjct: 607 DTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGS 666

Query: 803 LIEIIFPLYDTSHPH 817
              +  PLY   +P 
Sbjct: 667 QFTVRIPLYGAQYPQ 681


>gi|331663724|ref|ZP_08364634.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
           C) [Escherichia coli TA143]
 gi|284922210|emb|CBG35292.1| two-component system sensor kinase [Escherichia coli 042]
 gi|331059523|gb|EGI31500.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
           C) [Escherichia coli TA143]
          Length = 949

 Score =  304 bits (779), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 99/495 (20%), Positives = 186/495 (37%), Gaps = 41/495 (8%)

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
             P+   +             + LT  +S    +                    + ++L 
Sbjct: 239 TLPMGVTILDENGHT-----LISLTGPESKIKGDPRWMQERSWFGY----TEGFRELVLK 289

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV---DTRINK 444
           ++      +      +    E    +              +       E         + 
Sbjct: 290 KNLPPSSLSIVYSVPVDKVLERIRMLILNAILLNVLAGAALFTLARMYERRIFIPAESDA 349

Query: 445 RKMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            ++E        I+ +   GI I+   +G+ + +N            +  ++        
Sbjct: 350 LRLEEHEQFNRKIVASAPVGICILRTADGVNILSNELAHTYLNMLTHEDRQR-------- 401

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                    LT+I+       ++      T     L +  +  +    +     + D+S 
Sbjct: 402 ---------LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSS 448

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + +  L    + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R 
Sbjct: 449 RVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR- 506

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
                 ++ S +L+L I++D+LD SKIES ++ +     S  E ++   +        K+
Sbjct: 507 --LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQ 564

Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           + +      ++P  +  D   ++Q+  N+LSNAI FT +G  I++       + + +RVR
Sbjct: 565 LGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG-CIVLHVR-ADGDYLSIRVR 622

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTGVG+   E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+
Sbjct: 623 DTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGS 682

Query: 803 LIEIIFPLYDTSHPH 817
              +  PLY   +P 
Sbjct: 683 QFTVRIPLYGAQYPQ 697


>gi|91224005|ref|ZP_01259268.1| sensor protein LuxQ [Vibrio alginolyticus 12G01]
 gi|91190916|gb|EAS77182.1| sensor protein LuxQ [Vibrio alginolyticus 12G01]
 gi|188039120|gb|ACD47122.1| LuxQ [Vibrio alginolyticus]
          Length = 858

 Score =  304 bits (779), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 84/376 (22%), Positives = 164/376 (43%), Gaps = 23/376 (6%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            ++E +      +       I + +  G+++  N A  K      +     P     ++ 
Sbjct: 350 EELEAQKRSFRDLFNFALSPIMVWSESGVLVQINPAARKELVMENDVETMHPVFKGFKEK 409

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISE 563
               +           +   +          +K+    +   ++    S   +   DI+ 
Sbjct: 410 LMPHLRMAAQGATLTGVNVPI---------GDKVYRWNLSPIRVDGDISGIIVQGQDITT 460

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + + + + A+K AEK +  ++DFLA++SHEIRTP+  I+G ++++K+     +     
Sbjct: 461 LIEAEKQSNLARKEAEKSAQARADFLAKMSHEIRTPINGILGVAQLLKD----SVETEEQ 516

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
               + +  SG  +L ++ND+LD SKIE GK N+   P S  + +    ++ +     K 
Sbjct: 517 NNQIDVLRHSGEHLLAVLNDILDFSKIEQGKFNIQKHPFSFTDTIRTLENIYRPICESKG 576

Query: 684 ILIRTS--FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-----SNEE 736
           + +        N+  I  D   + QI  N++SN++ FTPSG  + +           N  
Sbjct: 577 VNLVIENKIDPNV-EIFTDQVRLNQILFNLVSNSVKFTPSGS-VRLHAELEQFYGADNSV 634

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           +++ + DTG+G+ + +L++  +PF Q   +      G+GLGL + K++VD   G   + S
Sbjct: 635 LVVEISDTGIGIESDKLDQMFEPFVQEEATTTREYGGSGLGLTIVKSLVDMLEGDVQVRS 694

Query: 797 TPAKGTLIEIIFPLYD 812
               GT   I  P+ D
Sbjct: 695 QKGLGTTFVITMPVKD 710


>gi|21227050|ref|NP_632972.1| sensory transduction histidine kinase [Methanosarcina mazei Go1]
 gi|20905373|gb|AAM30644.1| Sensory transduction histidine kinases [Methanosarcina mazei Go1]
          Length = 397

 Score =  304 bits (779), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 89/310 (28%), Positives = 151/310 (48%), Gaps = 4/310 (1%)

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH-- 559
           +          +       L           +  E L  +      +     +   MH  
Sbjct: 66  DPEKLEENLKEINRDNERKLTYLCTFPLEELSGSELLRLVEEKGVLVKRKGGWECLMHTC 125

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           +I+  K+ +  L  AKK AE  +  K+ F+  +SHE+RTPL ++IGFS+++    FGP+ 
Sbjct: 126 NINGQKELETTLLRAKKDAEATNRAKNSFIMNMSHELRTPLNSVIGFSDLLLEGAFGPM- 184

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
           N +  +Y N I  SG  +L+I+N+LLDIS++E+G+  L +E V +   + E    +   A
Sbjct: 185 NTKQSKYVNNILISGKNLLEIINNLLDISRLEAGEKTLKYEDVDVASLIGEVRMNLLSPA 244

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
           + K+I +      ++  + AD+  ++QI  N++SNAI FTP+ G+++IS        + +
Sbjct: 245 SVKKINVELKIDPSVGNVEADISKLRQILYNLVSNAIKFTPARGKVVIS-ACKKEGVLEV 303

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
           +V D G+G++    EK   PF Q  +S      G GLGL + +  VD + G   + S   
Sbjct: 304 KVSDNGIGISEDSYEKIFMPFTQADSSAARGYGGAGLGLFIVRNFVDLHGGDISVNSEVG 363

Query: 800 KGTLIEIIFP 809
           KG+      P
Sbjct: 364 KGSTFTFTIP 373


>gi|300113386|ref|YP_003759961.1| PAS/PAC sensor signal transduction histidine kinase [Nitrosococcus
           watsonii C-113]
 gi|299539323|gb|ADJ27640.1| PAS/PAC sensor signal transduction histidine kinase [Nitrosococcus
           watsonii C-113]
          Length = 499

 Score =  304 bits (779), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 95/503 (18%), Positives = 189/503 (37%), Gaps = 39/503 (7%)

Query: 325 TVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
            ++       +    G + ++N +      Y   + +     +  L+       +     
Sbjct: 14  LLESASNALLISDHQGQIVFSNTALEKCFGYTGKELLG--LTIEDLIPKRFRQQHKTYHA 71

Query: 384 VMLY--RSDRTCIAASARLHTIQWN-RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
             +       T    +  L  +  +       +              +    I  +    
Sbjct: 72  DYIASPHLHGTHQELNDALKPLGLHKNGTEFPLEISLIPLETSTG--LYVLSIVRDTTPQ 129

Query: 441 RINKRK-------MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
           R  +               +L +IL   +DGI II+  G+I + N    +LFGY   + +
Sbjct: 130 RPAEETPSQYEALAWESKARLQAILNTATDGIIIIDENGLIETFNPGAERLFGYEAAEAI 189

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIK--KLP 549
            +   + +          Y+   L     + +   + T G  K      + I I   +L 
Sbjct: 190 GQNILILMPSPHREQDTGYIERYLQTGQGEFIGASRETTGMRKNGSTFPIDISISEMRLG 249

Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
               ++  + DI+E         H  K  E++++    F+  VSH++R+PL  I GF+  
Sbjct: 250 ERRLFTGIVRDITER--------HHFKELEEKNAELERFIYTVSHDLRSPLITIHGFA-G 300

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           +  Q F      + +E    I  +   +  +++DLL++S+I  G++    E  SL +   
Sbjct: 301 MLKQSFTQHNQEQILEDIGRIQAAAAKMQLLLDDLLELSRI--GRLPNRPEKFSLSDLTR 358

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
           EA  LVQ    ++ + I+   A  +P +  D R + ++  N++ NA+ F        I  
Sbjct: 359 EATELVQSAITKRGVQIKV--APTLPHLFGDRRRLLEVMQNLIENAVKFMGDQKAPWIEI 416

Query: 730 -THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
             +    +++  VRD G+G+     EK    F    +S     EGTG+GL + K +++ +
Sbjct: 417 NAYEEEGKLLCYVRDNGMGIDPRYHEKIFNLF----DSLHQNVEGTGIGLTIVKRIIEIH 472

Query: 789 MGKFYIFS--TPAKGTLIEIIFP 809
            G  ++ S     +G+      P
Sbjct: 473 EGHVWVQSAGAIGQGSTFYFSLP 495



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 56/152 (36%), Gaps = 9/152 (5%)

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
            V     +LE+ S+ + I + +G I+ +N A+ K FGY  +++L       + +      
Sbjct: 7   RVESFKHLLESASNALLISDHQGQIVFSNTALEKCFGYTGKELLGLTIEDLIPKRFRQQH 66

Query: 510 NHYLTEILSLDLRQTLEKIT------LGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDI 561
             Y  + ++        +        LG  K      L I +  L  S+       + D 
Sbjct: 67  KTYHADYIASPHLHGTHQELNDALKPLGLHKNGTEFPLEISLIPLETSTGLYVLSIVRDT 126

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
           +  +  +   S  + +A + S  +   +   +
Sbjct: 127 TPQRPAEETPSQYEALAWE-SKARLQAILNTA 157



 Score = 46.2 bits (108), Expect = 0.021,   Method: Composition-based stats.
 Identities = 26/247 (10%), Positives = 63/247 (25%), Gaps = 19/247 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTW---- 143
           ID +G ++  +    +  G  A + IG  +  +    H + +  +I   L+         
Sbjct: 164 IDENGLIETFNPGAERLFGYEAAEAIGQNILILMPSPHREQDTGYIERYLQTGQGEFIGA 223

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +TT     G+   + I ++ + +  R R F+G     IV      +  + L ++  + 
Sbjct: 224 SRETTGMRKNGSTFPIDISISEMRLGER-RLFTG-----IVRDITERHHFKELEEKNAEL 277

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
                   +                       +K   +   +    +D          + 
Sbjct: 278 --------ERFIYTVSHDLRSPLITIHGFAGMLKQSFTQHNQEQILEDIGRIQAAAAKMQ 329

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
                L E      +            T +                 ++           
Sbjct: 330 LLLDDLLELSRIGRLPNRPEKFSLSDLTREATELVQSAITKRGVQIKVAPTLPHLFGDRR 389

Query: 324 ETVDKCP 330
             ++   
Sbjct: 390 RLLEVMQ 396


>gi|253568043|ref|ZP_04845454.1| two-component system sensor histidine kinase/response regulator
           [Bacteroides sp. 1_1_6]
 gi|251842116|gb|EES70196.1| two-component system sensor histidine kinase/response regulator
           [Bacteroides sp. 1_1_6]
          Length = 939

 Score =  304 bits (779), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 96/494 (19%), Positives = 184/494 (37%), Gaps = 31/494 (6%)

Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
           F     G L +AN  FL        ++I           A  ++                
Sbjct: 289 FAAKEDGTLIFANRQFLHNHGIPESEEIGKLKIYE---IAGDMNTQEDWHERCKDILHGG 345

Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
             +  A   +       +           +             +  +    + +++   +
Sbjct: 346 SRSFVAHHPSKVSKNILAYEGIMYNVTNDSGEESYWSF---SHDISERLHYEAQIKRLNL 402

Query: 453 QLCSILEATSDGIAI--INREGIILSTNR-AVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
            + + ++    GI +  IN +   +  NR + ++       + + K    +         
Sbjct: 403 IMDTTIDNLPAGIVVKEINNDFRYIYRNRESYNRNLCI--GESIGKNDFDYYPPEVAEKK 460

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWK 565
               T + +    + L   T G  K    + L     ++               DI+E +
Sbjct: 461 REEDTLVATTG--RGLHWTTEGKDKNGNEIILDKRKIRVDGDELSSPIIVSIEWDITELE 518

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + K +L  +K+ AE     KS FLA +SHEIRTPL AI+GFS +I               
Sbjct: 519 KIKRELQTSKEKAEMSDKLKSAFLANMSHEIRTPLNAIVGFSHLIAE----SENKEERKT 574

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           +   ++ +   +L ++N++LD+SKIESG +     P++++    E          +  + 
Sbjct: 575 FYEIVEANNERLLQLINEILDLSKIESGIIEFTSAPININSLCKEVHDAHVFRTPQ-GVQ 633

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-SNEEVILRVRDT 744
           +    + N   I  D   V Q+  N++ NA  FT +G    IS  +     +++  V DT
Sbjct: 634 LIYEPSENGLVIETDKNRVFQVFSNLIGNAFKFTKAGS---ISYGYKLVGNQIVFHVTDT 690

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G G+   ++ +  + F ++ N      +GTGLGL + K +V+   G+  + S   +GT  
Sbjct: 691 GTGIEPEKIGRVFERFAKLNNY----AQGTGLGLSICKTIVERLGGEISVSSVVGQGTTF 746

Query: 805 EIIFPLYDTSHPHD 818
               P Y++    +
Sbjct: 747 TFTLP-YESEQSTE 759



 Score = 51.2 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 31/273 (11%), Positives = 74/273 (27%), Gaps = 14/273 (5%)

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDI 360
           +Y       ++    ++      E      I  ++Y+  +  +          Y  V   
Sbjct: 135 QYRDITQRSNVKRQLEQVNRNLREIQKVAQIGQWMYNTRDNVFH------YMGYTGVLCE 188

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
           E +  +S       + + + +      R +   +   +  + ++   E            
Sbjct: 189 ESSRSISLEKYQEFIVEEDRLSFTSWCRKNEEGLNEESISYRVRVAGEIYYMRLQAYLRD 248

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
                 +    G      D +  +  +      L   +    + I     +G ++  NR 
Sbjct: 249 ELPNG-SCNIEGYIQNITDIQRRRNDI----NTLTHAINNAKESIFAAKEDGTLIFANRQ 303

Query: 481 VSKLFGYPVEDILRKPFTVFLEQN--TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
                G P  + + K     +  +  T    +    +IL    R  +       +K    
Sbjct: 304 FLHNHGIPESEEIGKLKIYEIAGDMNTQEDWHERCKDILHGGSRSFVAHHPSKVSKNILA 363

Query: 539 LS-LRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570
              +   +        Y    HDISE    + +
Sbjct: 364 YEGIMYNVTNDSGEESYWSFSHDISERLHYEAQ 396



 Score = 43.5 bits (101), Expect = 0.17,   Method: Composition-based stats.
 Identities = 26/184 (14%), Positives = 58/184 (31%), Gaps = 20/184 (10%)

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
           E      IL+ T+D + +++R GI +      S L+    E +L K     + ++T   +
Sbjct: 34  EADNAQRILKLTADTMLLVDRNGICIDI-DIHSNLWFLQEERLLGKNIFERMPEHTREKV 92

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN 569
                 +L      +               +        P+         DI++    K 
Sbjct: 93  YSTFQTVLREQRSISKNYKLELEDN-----TYYFKCIMYPYDDMVLCQYRDITQRSNVKR 147

Query: 570 KLSHAKKIAEKESS--HKSDFLA----RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
           +L    +   +         ++      V H         +G++ V+  +    +   +Y
Sbjct: 148 QLEQVNRNLREIQKVAQIGQWMYNTRDNVFH--------YMGYTGVLCEESSRSISLEKY 199

Query: 624 IEYA 627
            E+ 
Sbjct: 200 QEFI 203


>gi|320178808|gb|EFW53771.1| Two-component sensor protein RcsC [Shigella boydii ATCC 9905]
          Length = 949

 Score =  304 bits (779), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 99/495 (20%), Positives = 186/495 (37%), Gaps = 41/495 (8%)

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
             P+   +             + LT  +S    +                    + ++L 
Sbjct: 239 TLPMGVTILDENGHT-----LISLTGPESKIKGDPRWMQERSWFGY----TEGFRELVLK 289

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV---DTRINK 444
           ++      +      +    E    +              +       E         + 
Sbjct: 290 KNLPPSSLSIVYSVPVDKVLERIRMLILNAILLNVLAGAALFTLARMYERRIFIPAESDA 349

Query: 445 RKMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            ++E        I+ +   GI I+   +G+ + +N            +  ++        
Sbjct: 350 LRLEEHEQFNRKIVASAPVGICILRTADGVNILSNELAHTYLNMLTHEDRQR-------- 401

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                    LT+I+       ++      T     L +  +  +    +     + D+S 
Sbjct: 402 ---------LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSS 448

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + +  L    + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R 
Sbjct: 449 RVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR- 506

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
                 ++ S +L+L I++D+LD SKIES ++ +     S  E ++   +        K+
Sbjct: 507 --LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQ 564

Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           + +      ++P  +  D   ++Q+  N+LSNAI FT +G  I++       + + +RVR
Sbjct: 565 LGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG-CIVLHVR-ADGDYLSIRVR 622

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTGVG+   E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+
Sbjct: 623 DTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGS 682

Query: 803 LIEIIFPLYDTSHPH 817
              +  PLY   +P 
Sbjct: 683 QFTVRIPLYGAQYPQ 697


>gi|297569592|ref|YP_003690936.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296925507|gb|ADH86317.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 807

 Score =  304 bits (779), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 99/492 (20%), Positives = 185/492 (37%), Gaps = 43/492 (8%)

Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
            +    + D +      + +L +    ++ A+  V   R+    I     +     +  +
Sbjct: 40  QVQSPAAADRLLRWWQPAVILLSAPAGEDEALGAVRRLRAAAGAIPL---IVLGDRDDSH 96

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN---KRKMEIEVMQLCSILEATSDGIA 466
                     +       +  + +       R     + ++     +L   L      + 
Sbjct: 97  FALQVLTAGAQDFLVKSFLTISTLTRAISQARTRVTLENRLRESQQRLELALSGADLALW 156

Query: 467 IINREGIILSTNRAVSKLFGYPVEDIL--RKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
             +     ++ +     + G   +++      +   +     S +   L   L      T
Sbjct: 157 DWHLAADHITYDGHWQAITGQQQQELAADGDAWRRLIHPEDRSRVLAALNRHL-TGESST 215

Query: 525 LEKITLGSTKEEKLLSL--RIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAE 579
            E       +E   + L  R  + +            T  +IS  KQ + +L    +   
Sbjct: 216 FEAEYRLRHREGHWIWLLDRGRVVQRAEDGTPLRLVGTCLEISRRKQAEAELEQRNEELT 275

Query: 580 KESSH---------------------KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
           + +                       KSDFLA +SHEIRTP+  +IG + ++        
Sbjct: 276 RANHQLAASNRRAAVLAAEAEAANRAKSDFLAHMSHEIRTPMNGVIGMTALLLAGDL--- 332

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
            + +   YA  I  SG  +L I+ND+LD++KIE+G++ L     SL   ++E  +L+Q  
Sbjct: 333 -DEQQRHYAGVIKASGEALLRIINDILDLAKIEAGRLELVSRDFSLPALLAEIFTLLQPE 391

Query: 679 ANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737
           A  K + ++   A ++P  +  D   ++QI LN+L NAI FT  G    +  + +   E+
Sbjct: 392 AAAKGLALKEQVAADLPPRLRGDDVRLRQILLNLLGNAIKFTDHG---EVELSVSGQHEI 448

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
              VRDTG G+     ++   PF Q   + + R  GTGLGL + + +     G   + ST
Sbjct: 449 CFSVRDTGPGVPPELQQQIFAPFEQAGAADRRRPAGTGLGLAICRRLAQLMEGSLRVEST 508

Query: 798 PAKGTLIEIIFP 809
           P  G     + P
Sbjct: 509 PGAGATFHCVLP 520


>gi|188493885|ref|ZP_03001155.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           53638]
 gi|188489084|gb|EDU64187.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           53638]
          Length = 949

 Score =  304 bits (779), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 99/495 (20%), Positives = 186/495 (37%), Gaps = 41/495 (8%)

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
             P+   +             + LT  +S    +                    + ++L 
Sbjct: 239 TLPMGVTILDENGHT-----LISLTGPESKIKGDPRWMQERSWFGY----TEGFRELVLK 289

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV---DTRINK 444
           ++      +      +    E    +              +       E         + 
Sbjct: 290 KNLPPSSLSIVYSVPVDKVLERIRMLILNAILLNVLAGAALFTLARMYERRIFIPAESDA 349

Query: 445 RKMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            ++E        I+ +   GI I+   +G+ + +N            +  ++        
Sbjct: 350 LRLEEHEQFNRKIVASAPVGICILRTADGVNILSNELAHTYLNMLTHEDRQR-------- 401

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                    LT+I+       ++      T     L +  +  +    +     + D+S 
Sbjct: 402 ---------LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSS 448

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + +  L    + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R 
Sbjct: 449 RVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR- 506

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
                 ++ S +L+L I++D+LD SKIES ++ +     S  E ++   +        K+
Sbjct: 507 --LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQ 564

Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           + +      ++P  +  D   ++Q+  N+LSNAI FT +G  I++       + + +RVR
Sbjct: 565 LGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG-CIVLHVR-ADGDYLSIRVR 622

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTGVG+   E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+
Sbjct: 623 DTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGS 682

Query: 803 LIEIIFPLYDTSHPH 817
              +  PLY   +P 
Sbjct: 683 QFTVRIPLYGAQYPQ 697


>gi|162449087|ref|YP_001611454.1| two-component hybrid histidine kinase [Sorangium cellulosum 'So ce
           56']
 gi|161159669|emb|CAN90974.1| two-component hybrid histidine kinase [Sorangium cellulosum 'So ce
           56']
          Length = 859

 Score =  304 bits (779), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 97/368 (26%), Positives = 160/368 (43%), Gaps = 8/368 (2%)

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP-VEDILRKPFTVFLEQNT 505
           ++ +   L  ++      I   +R G  L  N+          +E+++ K          
Sbjct: 50  LDHQQAVLKYVIANVPHAIFWKDRHGRFLGGNQNFLNDTNTKVLENLVGKTDFDVWGSKN 109

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDI 561
                    E++       L+        + +   L      +               DI
Sbjct: 110 AECFVRIDREVMEGGTP-ILDVEEPLLRPDGEQRFLLTSKVPIRDERGEVTGILGIYADI 168

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           +E K+ + +L  AK+ A+  +  K +FL  +SHE+RTPL+ I+G  E + + R  PL  P
Sbjct: 169 TERKRMEIELQKAKEAADAAACAKGEFLTVMSHELRTPLSLILGPLESLLSSRDEPLS-P 227

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
           R       I RSG  +  +V+D+LD  KIE+GKM + +E V + E VS+ +   +  A  
Sbjct: 228 RVRADLELIQRSGRRLRRLVDDVLDHQKIEAGKMQIDWEAVDVGELVSDMVEEARPAAAR 287

Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
             + +       + R+ AD R +++IALN+L NA+ FTP GG++ +           L V
Sbjct: 288 GGLDLSIRVDPELRRVPADRRKLEKIALNLLGNALKFTPPGGRVTVDLRALD-GLFELSV 346

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            DTG G+         + F QI  S   + EGTG+GL LAK + +   G   + S P  G
Sbjct: 347 EDTGPGIPADRRHLLFQRFQQIDASATRKHEGTGIGLSLAKELTELMGGAVGVESEPGVG 406

Query: 802 TLIEIIFP 809
           +   +  P
Sbjct: 407 SRFFVRLP 414



 Score =  209 bits (533), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 59/261 (22%), Positives = 116/261 (44%), Gaps = 17/261 (6%)

Query: 563 EWKQEKNKLSHAKKIAEKE--SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR---FGP 617
           E      +LS A++   +    +     +A +SHE+  P++AI+  ++++  +     G 
Sbjct: 604 ELAAALEQLSEAQQELLQAGKMAAIGTLVAGLSHEMNNPVSAILMNAQLLLRRHRKGHGL 663

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
                 ++    I+R      D+V  LL+ ++       +  EP  +  A+  A+ L   
Sbjct: 664 PDEASLLKALGTIERQAIRCSDLVTALLEYAR----GKPIGREPCDVRAALRRAVDLSAP 719

Query: 678 YANEKRILIRTSF-ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
            A E+R+ + T   ++ +P +L +   ++   LN++ NA+  +P G  +++        +
Sbjct: 720 RARERRVHLETDGNSSALPEVLVNASQLESALLNVIGNALDASPHGSAVVVEARPRPRGD 779

Query: 737 ---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
              V + V D G G+   +L +  +PF          G+GTGLGL L    ++ + G   
Sbjct: 780 IHGVEIDVHDHGCGIRAEDLSRIFEPFFTTKPP----GQGTGLGLSLTHRFIEEHQGSIR 835

Query: 794 IFSTPAKGTLIEIIFPLYDTS 814
           I S P +GT + +  P   T 
Sbjct: 836 IESAPGEGTTVRMWLPARQTE 856



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 51/413 (12%), Positives = 103/413 (24%), Gaps = 19/413 (4%)

Query: 44  PCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELP 103
           P     +++      QE          +    +          W  D HG     ++   
Sbjct: 28  PRVAPPDEAPTGTAAQEWTPEPLD-HQQAVLKYVIANVPHAIFWK-DRHGRFLGGNQNFL 85

Query: 104 -KTIGNYAFKMIGMRLCDVSDILHIDPNNHI-GDLLKRQNTWYG-KTTLWPIEGTNLYVP 160
             T       ++G    DV    + +    I  ++++        +  L   +G   ++ 
Sbjct: 86  NDTNTKVLENLVGKTDFDVWGSKNAECFVRIDREVMEGGTPILDVEEPLLRPDGEQRFLL 145

Query: 161 IDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKE 220
              + +PI     E +G  G  I              ++  +        K    +V   
Sbjct: 146 T--SKVPIRDERGEVTGILG--IYADITERKRMEIELQKAKEAADAAACAKGEFLTVMSH 201

Query: 221 KYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINL 280
           +          P   + +            D  L       L      + + +      +
Sbjct: 202 ELRTPLSLILGPLESLLSSRDEPLSPRVRADLELIQRSGRRLRRLVDDVLDHQKIEAGKM 261

Query: 281 NQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN 340
               +    G L ++  E     + R    LS   D      P    K      +   GN
Sbjct: 262 QIDWEAVDVGELVSDMVEEARPAAARGGLDLSIRVDPELRRVPADRRKL-EKIALNLLGN 320

Query: 341 LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400
                P    +T      D+    GL  L          A +  +L++  +   A++ R 
Sbjct: 321 ALKFTPPGGRVTV-----DLRALDGLFELSVEDTGPGIPADRRHLLFQRFQQIDASATRK 375

Query: 401 HTIQWNR----ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449
           H          +    +        ++           P   D    +R    
Sbjct: 376 HEGTGIGLSLAKELTELMGGAVGVESEPGVGSRFFVRLPRAADFLAARRATAA 428


>gi|253680781|ref|ZP_04861584.1| two-component sensor histidine kinase [Clostridium botulinum D str.
           1873]
 gi|253562630|gb|EES92076.1| two-component sensor histidine kinase [Clostridium botulinum D str.
           1873]
          Length = 781

 Score =  304 bits (779), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 89/383 (23%), Positives = 164/383 (42%), Gaps = 12/383 (3%)

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
           +    +  +     +L  ++ A  D I + +  G  L  N++  K F         K   
Sbjct: 371 EKHHTRNALIESEKRLRILINAFPDLICLKDGNGHWLEVNKSTIKFFNLKNFHWKNKTTQ 430

Query: 499 VFL--------EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
             +         ++     NH+ +  L        +     S  E+ +L +  +      
Sbjct: 431 DIINTLTYNSTYKDHLEKYNHFDSLALIRKTMVNYKDEFSLSNGEKLVLDIFKVPIFDYN 490

Query: 551 SS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
            +        HD++   + +       ++  +    + +F A +SHE++TPL  I+   +
Sbjct: 491 DNLTGMVTIGHDLTAHIKAEENTKLLNEML-EYQKLRVEFFANISHELKTPLNLILSAVQ 549

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
            I+           + +Y N I ++   ++ IVN+L+DI+KI+SG   +H E  ++ E V
Sbjct: 550 YIELVHNKNFNLDDFCKYTNIIKQNSYRLVRIVNNLIDITKIDSGYFQIHAENYNIVELV 609

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
            +       Y N K + +          I  D   +++I LN+LSNAI FTPSGG+I ++
Sbjct: 610 EDICLYCASYINSKNLELIFDTETEEKIISCDALIMERIILNLLSNAIKFTPSGGRITVN 669

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
             +  + E+ + V+DTG+G+     E   + F Q+  S     EG+G+GL L KA V+ +
Sbjct: 670 I-YDKDNEIQISVKDTGIGIPENRQELIFERFIQVDKSLSRNHEGSGVGLSLVKAFVNLH 728

Query: 789 MGKFYIFSTPAKGTLIEIIFPLY 811
            G   + S    G+   I  P+ 
Sbjct: 729 NGNIKVKSKVGYGSEFLITLPVA 751


>gi|331653653|ref|ZP_08354654.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
           C) [Escherichia coli M718]
 gi|331048502|gb|EGI20578.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
           C) [Escherichia coli M718]
          Length = 949

 Score =  304 bits (779), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 99/495 (20%), Positives = 186/495 (37%), Gaps = 41/495 (8%)

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
             P+   +             + LT  +S    +                    + ++L 
Sbjct: 239 TLPMGVTILDENGHT-----LISLTGPESKIKGDPRWMQERSWFGY----TEGFRELVLK 289

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV---DTRINK 444
           ++      +      +    E    +              +       E         + 
Sbjct: 290 KNLPPSSLSIVYSVPVDKVLERIRMLILNAILLNVLAGAALFTLARMYERRIFIPAESDA 349

Query: 445 RKMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            ++E        I+ +   GI I+   +G+ + +N            +  ++        
Sbjct: 350 LRLEEHEQFNRKIVASAPVGICILRTADGVNILSNELAHTYLNMLTHEDRQR-------- 401

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                    LT+I+       ++      T     L +  +  +    +     + D+S 
Sbjct: 402 ---------LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSS 448

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + +  L    + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R 
Sbjct: 449 RVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR- 506

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
                 ++ S +L+L I++D+LD SKIES ++ +     S  E ++   +        K+
Sbjct: 507 --LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQ 564

Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           + +      ++P  +  D   ++Q+  N+LSNAI FT +G  I++       + + +RVR
Sbjct: 565 LGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG-CIVLHVR-ADGDYLSIRVR 622

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTGVG+   E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+
Sbjct: 623 DTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGS 682

Query: 803 LIEIIFPLYDTSHPH 817
              +  PLY   +P 
Sbjct: 683 QFTVRIPLYGAQYPQ 697


>gi|161950145|ref|YP_402525.2| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Shigella dysenteriae Sd197]
          Length = 949

 Score =  304 bits (779), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 99/495 (20%), Positives = 186/495 (37%), Gaps = 41/495 (8%)

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
             P+   +             + LT  +S    +                    + ++L 
Sbjct: 239 TLPMGVTILDENGHT-----LISLTGPESKIKGDPRWMQERSWFGY----TEGFRELVLK 289

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV---DTRINK 444
           ++      +      +    E    +              +       E         + 
Sbjct: 290 KNLPPSSLSIVYSVPVDKVLERIRMLILNAILLNVLAGAALFTLARMYERRIFIPAESDA 349

Query: 445 RKMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            ++E        I+ +   GI I+   +G+ + +N            +  ++        
Sbjct: 350 LRLEEHEQFNRKIVASAPVGICILRTADGVNILSNELAHTYLNMLTHEDRQR-------- 401

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                    LT+I+       ++      T     L +  +  +    +     + D+S 
Sbjct: 402 ---------LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSS 448

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + +  L    + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R 
Sbjct: 449 RVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR- 506

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
                 ++ S +L+L I++D+LD SKIES ++ +     S  E ++   +        K+
Sbjct: 507 --LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQ 564

Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           + +      ++P  +  D   ++Q+  N+LSNAI FT +G  I++       + + +RVR
Sbjct: 565 LGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG-CIVLHVR-ADGDYLSIRVR 622

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTGVG+   E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+
Sbjct: 623 DTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGS 682

Query: 803 LIEIIFPLYDTSHPH 817
              +  PLY   +P 
Sbjct: 683 QFTVRIPLYGAQYPQ 697


>gi|317050810|ref|YP_004111926.1| ATPase ATP-binding domain-containing protein [Desulfurispirillum
           indicum S5]
 gi|316945894|gb|ADU65370.1| ATP-binding region ATPase domain protein [Desulfurispirillum
           indicum S5]
          Length = 864

 Score =  304 bits (779), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 80/284 (28%), Positives = 131/284 (46%), Gaps = 14/284 (4%)

Query: 539 LSLRIIIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSH 594
           + L      L  +  Y L   D    ++       +L  A+  AE  +  KS FLA +SH
Sbjct: 162 IILTSTAYALESAELYRLLSQDNERLQKLVEKRTAELERARDQAEGANRAKSQFLANMSH 221

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           E+RTPL+ IIG  +++ + R     +    EYA     S + +L ++ND+LD SKIE+GK
Sbjct: 222 ELRTPLSGIIGMVDLLLDTRL----DNEQQEYARLASDSAHALLALINDILDFSKIEAGK 277

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILS 713
           + +     SL         L  L A +K I++ +     +P  +  D   ++Q+  N+LS
Sbjct: 278 LEIEEAEFSLGSLTEGVTELFALAAQKKGIVLTSYVDPQLPAYVRGDALRLRQVLANLLS 337

Query: 714 NAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
           NA+ FT  G  + +      +      +   V DTG+G+     E+  + F Q  +S   
Sbjct: 338 NALKFTEKGS-VQLQVKILGDGGQAPLIRFEVCDTGIGVDAEVAERLFQSFTQADSSTTR 396

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
           +  GTGLGL + + +V+   G+  I S   +G+      PL   
Sbjct: 397 KYGGTGLGLAICRNLVELMGGEIGIESRLGQGSTFWFTLPLLPA 440


>gi|108759236|ref|YP_635471.1| sensory box histidine kinase/response regulator [Myxococcus xanthus
           DK 1622]
 gi|108463116|gb|ABF88301.1| sensory box histidine kinase/response regulator [Myxococcus xanthus
           DK 1622]
          Length = 842

 Score =  304 bits (779), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 86/412 (20%), Positives = 172/412 (41%), Gaps = 29/412 (7%)

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK---------MEIEVMQLCSILEA 460
           SLA+         +             D++ R+ +R          +     +  +ILEA
Sbjct: 179 SLALVAYVLVVMVRLSRATADLATLNTDLERRVEERTKALSAANDGLRASEARKAAILEA 238

Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS--VMNHYLTEILS 518
           + DGI +++  G +L  N +  K F     D++ + F                 L    +
Sbjct: 239 SPDGILLLDGGGDLLELNPSAQKTFQVVAADVVGRDFLSVALPAELPDGARQKVLAAGRN 298

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKK 576
               Q     +    ++       + I ++P      Y++ + DI+E K  +        
Sbjct: 299 TASGQATRLESPCLRRDGSTFPAELTIVRVPGEGPPRYTVFVRDITERKAVE-------- 350

Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
                   K++F++ VSHE+RTPLT+I G   +++    G +  P+ ++       +   
Sbjct: 351 ------RMKNEFISTVSHELRTPLTSIRGSLGLLEGGIVGDIP-PQALDMVRIARTNTER 403

Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696
           ++ ++ND+LD+ K+E+GK+ L        + V  A + V+  A+   + +        P+
Sbjct: 404 LIRLINDILDLEKMEAGKLELKVSTPECADLVESAFASVRGMADGAGVSLHAEVTGT-PQ 462

Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKA 756
           + AD   + Q+  N++SNA+ F+P G  + +      +  V   V D G G++  +  + 
Sbjct: 463 VKADRDRLVQVLTNLVSNAVKFSPQGAGVTVRVGEEEDGRVRFSVVDQGPGISQEQRARL 522

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
              F Q+ +S      GTGLGL +++A+V+ +  +  + S   +G+      
Sbjct: 523 FGRFQQLDSSDTRSKGGTGLGLAISQAIVEQHGSRITVESEEGRGSTFTFTL 574


>gi|161986500|ref|YP_311159.2| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Shigella sonnei Ss046]
 gi|191165347|ref|ZP_03027189.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           B7A]
 gi|193062260|ref|ZP_03043355.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           E22]
 gi|193068180|ref|ZP_03049144.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           E110019]
 gi|194427111|ref|ZP_03059662.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           B171]
 gi|293415518|ref|ZP_06658161.1| two-component system [Escherichia coli B185]
 gi|293446568|ref|ZP_06662990.1| two-component system [Escherichia coli B088]
 gi|307311208|ref|ZP_07590852.1| integral membrane sensor hybrid histidine kinase [Escherichia coli
           W]
 gi|331668924|ref|ZP_08369772.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
           C) [Escherichia coli TA271]
 gi|331678173|ref|ZP_08378848.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
           C) [Escherichia coli H591]
 gi|190904510|gb|EDV64217.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           B7A]
 gi|192931926|gb|EDV84525.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           E22]
 gi|192958459|gb|EDV88898.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           E110019]
 gi|194414732|gb|EDX31003.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           B171]
 gi|291323398|gb|EFE62826.1| two-component system [Escherichia coli B088]
 gi|291433166|gb|EFF06145.1| two-component system [Escherichia coli B185]
 gi|306908714|gb|EFN39211.1| integral membrane sensor hybrid histidine kinase [Escherichia coli
           W]
 gi|315061526|gb|ADT75853.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and RcsD [Escherichia coli W]
 gi|320199813|gb|EFW74402.1| Two-component sensor protein RcsC [Escherichia coli EC4100B]
 gi|323161685|gb|EFZ47568.1| sensor kinase protein rcsC [Escherichia coli E128010]
 gi|323168624|gb|EFZ54304.1| sensor kinase protein rcsC [Shigella sonnei 53G]
 gi|323184157|gb|EFZ69534.1| sensor kinase protein rcsC [Escherichia coli 1357]
 gi|323377894|gb|ADX50162.1| integral membrane sensor hybrid histidine kinase [Escherichia coli
           KO11]
 gi|323945034|gb|EGB41099.1| RcsC Alpha-Beta-Loop [Escherichia coli H120]
 gi|324117892|gb|EGC11791.1| RcsC Alpha-Beta-Loop [Escherichia coli E1167]
 gi|331064118|gb|EGI36029.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
           C) [Escherichia coli TA271]
 gi|331074633|gb|EGI45953.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
           C) [Escherichia coli H591]
          Length = 949

 Score =  304 bits (779), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 99/495 (20%), Positives = 186/495 (37%), Gaps = 41/495 (8%)

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
             P+   +             + LT  +S    +                    + ++L 
Sbjct: 239 TLPMGVTILDENGHT-----LISLTGPESKIKGDPRWMQERSWFGY----TEGFRELVLK 289

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV---DTRINK 444
           ++      +      +    E    +              +       E         + 
Sbjct: 290 KNLPPSSLSIVYSVPVDKVLERIRMLILNAILLNVLAGAALFTLARMYERRIFIPAESDA 349

Query: 445 RKMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            ++E        I+ +   GI I+   +G+ + +N            +  ++        
Sbjct: 350 LRLEEHEQFNRKIVASAPVGICILRTADGVNILSNELAHTYLNMLTHEDRQR-------- 401

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                    LT+I+       ++      T     L +  +  +    +     + D+S 
Sbjct: 402 ---------LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSS 448

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + +  L    + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R 
Sbjct: 449 RVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR- 506

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
                 ++ S +L+L I++D+LD SKIES ++ +     S  E ++   +        K+
Sbjct: 507 --LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQ 564

Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           + +      ++P  +  D   ++Q+  N+LSNAI FT +G  I++       + + +RVR
Sbjct: 565 LGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG-CIVLHVR-ADGDYLSIRVR 622

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTGVG+   E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+
Sbjct: 623 DTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGS 682

Query: 803 LIEIIFPLYDTSHPH 817
              +  PLY   +P 
Sbjct: 683 QFTVRIPLYGAQYPQ 697


>gi|145698285|ref|NP_416722.2| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli str. K-12 substr. MG1655]
 gi|170081838|ref|YP_001731158.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli str. K-12 substr. DH10B]
 gi|238901393|ref|YP_002927189.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli BW2952]
 gi|256022099|ref|ZP_05435964.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia sp. 4_1_40B]
 gi|301024240|ref|ZP_07187935.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 196-1]
 gi|17433741|sp|P14376|RCSC_ECOLI RecName: Full=Sensor kinase protein RcsC; AltName: Full=Capsular
           synthesis regulator component C
 gi|145693157|gb|AAC75278.2| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli str. K-12 substr. MG1655]
 gi|169889673|gb|ACB03380.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli str. K-12 substr. DH10B]
 gi|238861443|gb|ACR63441.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli BW2952]
 gi|260448688|gb|ACX39110.1| histidine kinase [Escherichia coli DH1]
 gi|299880503|gb|EFI88714.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 196-1]
 gi|323936833|gb|EGB33118.1| RcsC Alpha-Beta-Loop [Escherichia coli E1520]
 gi|323941087|gb|EGB37274.1| RcsC Alpha-Beta-Loop [Escherichia coli E482]
 gi|332344000|gb|AEE57334.1| sensor kinase RcsC [Escherichia coli UMNK88]
          Length = 949

 Score =  304 bits (779), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 99/495 (20%), Positives = 186/495 (37%), Gaps = 41/495 (8%)

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
             P+   +             + LT  +S    +                    + ++L 
Sbjct: 239 TLPMGVTILDENGHT-----LISLTGPESKIKGDPRWMQERSWFGY----TEGFRELVLK 289

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV---DTRINK 444
           ++      +      +    E    +              +       E         + 
Sbjct: 290 KNLPPSSLSIVYSVPVDKVLERIRMLILNAILLNVLAGAALFTLARMYERRIFIPAESDA 349

Query: 445 RKMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            ++E        I+ +   GI I+   +G+ + +N            +  ++        
Sbjct: 350 LRLEEHEQFNRKIVASAPVGICILRTADGVNILSNELAHTYLNMLTHEDRQR-------- 401

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                    LT+I+       ++      T     L +  +  +    +     + D+S 
Sbjct: 402 ---------LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSS 448

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + +  L    + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R 
Sbjct: 449 RVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR- 506

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
                 ++ S +L+L I++D+LD SKIES ++ +     S  E ++   +        K+
Sbjct: 507 --LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQ 564

Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           + +      ++P  +  D   ++Q+  N+LSNAI FT +G  I++       + + +RVR
Sbjct: 565 LGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG-CIVLHVR-ADGDYLSIRVR 622

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTGVG+   E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+
Sbjct: 623 DTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGS 682

Query: 803 LIEIIFPLYDTSHPH 817
              +  PLY   +P 
Sbjct: 683 QFTVRIPLYGAQYPQ 697


>gi|262275765|ref|ZP_06053574.1| signal transduction histidine kinase [Grimontia hollisae CIP
           101886]
 gi|262219573|gb|EEY70889.1| signal transduction histidine kinase [Grimontia hollisae CIP
           101886]
          Length = 730

 Score =  304 bits (779), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 94/409 (22%), Positives = 183/409 (44%), Gaps = 44/409 (10%)

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490
             +E +    +   +++      + SI +A +  + ++  +G +  TNR  ++   +  +
Sbjct: 52  LEVESQRNALKKKNKQLLELNAYIRSINDAMNSILVVVGVDGQVSQTNRVFTEDLHWTED 111

Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL---LSLRIIIKK 547
           ++ +                  L+ I   +   +   +    T    L   + L      
Sbjct: 112 ELPQIHIDSLFP-------KDILSGIREKNGASSGSLVVSYITHRGHLECEMPLHRSNGA 164

Query: 548 LPFS----------------SCYSLTMHDISEWKQEKNKLSHA-------KKIAEKESSH 584
           L  +                    LT  DISE +Q +  L  +       K  A+  +  
Sbjct: 165 LTEAVYLVKGEQFYSHQGKLQGILLTATDISELRQREVALRQSEIALQKAKAEADAANQA 224

Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
           K DFLA +SHEIRTPL AIIGF+++  +         +  +Y N +D + + +  ++ND+
Sbjct: 225 KGDFLATMSHEIRTPLNAIIGFTKLCLHSELTL----KQRDYLNKVDVASHSLSHLINDV 280

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRS 703
           LD+SKIE+GK+ +   P +L++ +S    ++     ++ +        ++P  ++ D   
Sbjct: 281 LDLSKIEAGKLEMERVPFNLNQVLSNVRHVMWFDVAKRGLTFSMGVEPSVPANVIGDPLR 340

Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNE-----EVILRVRDTGVGMTNYELEKAMK 758
           ++Q+ +N++ NAI FT  G ++ ++ +   +       +I RV DTG+GMT+ +L +   
Sbjct: 341 LQQVLVNLVGNAIKFTDKG-EVSVTVSRKKSRARKSVTLIFRVCDTGIGMTDDQLSQLFS 399

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
            + Q   S   R  GTGLGL +++ +V+   G+ +I S   +GT  E  
Sbjct: 400 KYHQAEPSTSRRFGGTGLGLTISQKLVNLMKGRIHINSALGQGTECEFS 448


>gi|256017614|ref|ZP_05431479.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Shigella sp. D9]
 gi|332278624|ref|ZP_08391037.1| hybrid sensory kinase in two-component system response regulatory
           system with RcsB and YojN [Shigella sp. D9]
 gi|332100976|gb|EGJ04322.1| hybrid sensory kinase in two-component system response regulatory
           system with RcsB and YojN [Shigella sp. D9]
          Length = 949

 Score =  304 bits (779), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 98/427 (22%), Positives = 172/427 (40%), Gaps = 35/427 (8%)

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
           +     L  I+      L +  I                 E        +      E  Q
Sbjct: 303 VPVDKVLERIRM-----LILNAILLNVLAGAALFTLARMYERRIFIPAESDALRLEEHEQ 357

Query: 454 L-CSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
               I+ +   GI I+   +G+ + +N            +  ++                
Sbjct: 358 FNRKIVASAPVGICILRTADGVNILSNELAHTYLNMLTHEDRQR---------------- 401

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571
            LT+I+       ++      T     L +  +  +    +     + D+S   + +  L
Sbjct: 402 -LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSSRVKMEESL 456

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
               + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R       ++
Sbjct: 457 QEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR---LVTAMN 512

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
            S +L+L I++D+LD SKIES ++ +     S  E ++   +        K++ +     
Sbjct: 513 NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFIE 572

Query: 692 NNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
            ++P  +  D   ++Q+  N+LSNAI FT +G  I++       + + +RVRDTGVG+  
Sbjct: 573 PDVPVALNGDPMRLQQVISNLLSNAIKFTDTG-CIVLHVR-ADGDYLSIRVRDTGVGIPA 630

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+   +  PL
Sbjct: 631 KEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIPL 690

Query: 811 YDTSHPH 817
           Y   +P 
Sbjct: 691 YGAQYPQ 697


>gi|293410582|ref|ZP_06654158.1| hypothetical protein ECEG_01547 [Escherichia coli B354]
 gi|291471050|gb|EFF13534.1| hypothetical protein ECEG_01547 [Escherichia coli B354]
          Length = 949

 Score =  304 bits (779), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 99/495 (20%), Positives = 186/495 (37%), Gaps = 41/495 (8%)

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
             P+   +             + LT  +S    +                    + ++L 
Sbjct: 239 TLPMGVTILDENGHT-----LISLTGPESKIKGDPRWMQERSWFGY----TEGFRELVLK 289

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV---DTRINK 444
           ++      +      +    E    +              +       E         + 
Sbjct: 290 KNLPPSSLSIVYSVPVDKVLERIRMLILNAILLNVLAGAALFTLARMYERRIFIPAESDA 349

Query: 445 RKMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            ++E        I+ +   GI I+   +G+ + +N            +  ++        
Sbjct: 350 LRLEEHEQFNRKIVASAPVGICILRTADGVNILSNELAHTYLNMLTHEDRQR-------- 401

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                    LT+I+       ++      T     L +  +  +    +     + D+S 
Sbjct: 402 ---------LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSS 448

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + +  L    + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R 
Sbjct: 449 RVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR- 506

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
                 ++ S +L+L I++D+LD SKIES ++ +     S  E ++   +        K+
Sbjct: 507 --LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQ 564

Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           + +      ++P  +  D   ++Q+  N+LSNAI FT +G  I++       + + +RVR
Sbjct: 565 LGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG-CIVLHVR-ADGDYLSIRVR 622

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTGVG+   E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+
Sbjct: 623 DTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGS 682

Query: 803 LIEIIFPLYDTSHPH 817
              +  PLY   +P 
Sbjct: 683 QFTVRIPLYGAQYPQ 697


>gi|298387678|ref|ZP_06997229.1| two-component system sensor histidine kinase/response regulator,
           hybrid (one component system) [Bacteroides sp. 1_1_14]
 gi|298259534|gb|EFI02407.1| two-component system sensor histidine kinase/response regulator,
           hybrid (one component system) [Bacteroides sp. 1_1_14]
          Length = 921

 Score =  304 bits (779), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 96/491 (19%), Positives = 183/491 (37%), Gaps = 31/491 (6%)

Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
           F     G L +AN  FL        ++I           A  ++                
Sbjct: 289 FAAKEDGTLIFANRQFLHNHGIPESEEIGKLKIYE---IAGDMNTQKDWHERCKDILHGG 345

Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
             +  A   +       +           +             +  +    + +++   +
Sbjct: 346 SRSFVAHHPSKVSKNILAYEGIMYNVTNDSGEESYWSF---SHDISERLHYEAQIKRLNL 402

Query: 453 QLCSILEATSDGIAI--INREGIILSTNR-AVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
            + + ++    GI +  IN +   +  NR + ++       + + K    +         
Sbjct: 403 IMDTTIDNLPAGIVVKEINNDFRYIYRNRESYNRNLCI--GESIGKNDFDYYPPEVAEKK 460

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWK 565
               T + +    + L   T G  K    + L     ++               DI+E +
Sbjct: 461 REEDTLVATTG--RGLHWTTEGKDKNGNEIILDKRKIRVDGDELSSPIIVSIEWDITELE 518

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + K +L  +K+ AE     KS FLA +SHEIRTPL AI+GFS +I               
Sbjct: 519 KIKRELQTSKEKAEMSDKLKSAFLANMSHEIRTPLNAIVGFSHLIAE----SENKEERKT 574

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           +   ++ +   +L ++N++LD+SKIESG +     P++++    E          +  + 
Sbjct: 575 FYEIVEANNERLLQLINEILDLSKIESGIIEFTSAPININSLCKEVHDAHVFRTPQ-GVQ 633

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-SNEEVILRVRDT 744
           +    + N   I  D   V Q+  N++ NA  FT +G    IS  +     +++  V DT
Sbjct: 634 LIYEPSENGLVIETDKNRVFQVFSNLIGNAFKFTKAGS---ISYGYKLVGNQIVFHVTDT 690

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G G+   ++ +  + F ++ N      +GTGLGL + K +V+   G+  + S   +GT  
Sbjct: 691 GTGIEPEKIGRVFERFAKLNNY----AQGTGLGLSICKTIVERLGGEISVSSVVGQGTTF 746

Query: 805 EIIFPLYDTSH 815
               P Y++  
Sbjct: 747 TFTLP-YESEQ 756



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/274 (12%), Positives = 76/274 (27%), Gaps = 16/274 (5%)

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDD 359
           +Y       ++    ++      E      I  ++Y+   N+FY          Y  V  
Sbjct: 135 QYRDITQRSNVKRQLEQVNRNLREIQKVAQIGQWMYNTRDNVFY-------YMGYTGVLC 187

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
            E +  +S       + + + +      R +   +   +  + ++   E           
Sbjct: 188 EESSRSISLEKYQEFIVEEDRLSFTNWCRKNEEGLNEDSISYRVRVAGEIYYMRLQAYLR 247

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
                  +    G      D +  +  +      L   +    + I     +G ++  NR
Sbjct: 248 DELPNG-SCNIEGYIQNITDIQRRRNDI----NTLTHAINNAKESIFAAKEDGTLIFANR 302

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQN--TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
                 G P  + + K     +  +  T    +    +IL    R  +       +K   
Sbjct: 303 QFLHNHGIPESEEIGKLKIYEIAGDMNTQKDWHERCKDILHGGSRSFVAHHPSKVSKNIL 362

Query: 538 LLS-LRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570
               +   +        Y    HDISE    + +
Sbjct: 363 AYEGIMYNVTNDSGEESYWSFSHDISERLHYEAQ 396



 Score = 42.7 bits (99), Expect = 0.28,   Method: Composition-based stats.
 Identities = 25/180 (13%), Positives = 58/180 (32%), Gaps = 12/180 (6%)

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
           E      IL+ T+D + +++R GI +      S L+    E +L K     + ++T   +
Sbjct: 34  EADNAQRILKLTADTMLLVDRNGICIDI-DIHSNLWFLQEERLLGKNIFERMPEHTREKV 92

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN 569
                 +L      +               +        P+         DI++    K 
Sbjct: 93  YSTFQTVLREQRSISKNYKLELEDN-----TYYFKCIMYPYDDMVLCQYRDITQRSNVKR 147

Query: 570 KLSHAKKIAEKESS--HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
           +L    +   +         ++       R  +   +G++ V+  +    +   +Y E+ 
Sbjct: 148 QLEQVNRNLREIQKVAQIGQWMYNT----RDNVFYYMGYTGVLCEESSRSISLEKYQEFI 203


>gi|170679899|ref|YP_001744412.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli SMS-3-5]
 gi|170517617|gb|ACB15795.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           SMS-3-5]
          Length = 949

 Score =  304 bits (779), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 99/495 (20%), Positives = 185/495 (37%), Gaps = 41/495 (8%)

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
             P+   +             + LT  +S    +                    + ++L 
Sbjct: 239 TLPMGVTILDENGHT-----LISLTGPESKIKGDPRWMQERSWFGY----TEGFRELVLK 289

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV---DTRINK 444
           ++      +      +    E    +              +       E         + 
Sbjct: 290 KNLPPSSLSIVYSVPVDKVLERIRMLILNAILLNVLAGAALFTLARMYERRIFIPAESDA 349

Query: 445 RKMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            ++E        I+ +   GI I+   +G+ + +N            +  ++        
Sbjct: 350 LRLEEHEQFNRKIVASAPVGICILRTADGVNILSNELAHTYLNMLTHEDRQR-------- 401

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                    LT+I+       ++      T     L +  +  +    +     + D+S 
Sbjct: 402 ---------LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSS 448

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + +  L    + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R 
Sbjct: 449 RVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR- 506

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
                 ++ S +L+L I++D+LD SKIES ++ +     S  E ++   +        K+
Sbjct: 507 --LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQ 564

Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           + +      ++P  +  D   ++Q+  N+LSNAI FT +G   I+       + + +RVR
Sbjct: 565 LGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGC--IVLQVRADGDYLSIRVR 622

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTGVG+   E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+
Sbjct: 623 DTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGS 682

Query: 803 LIEIIFPLYDTSHPH 817
              +  PLY   +P 
Sbjct: 683 QFTVRIPLYGAQYPQ 697


>gi|239627656|ref|ZP_04670687.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239517802|gb|EEQ57668.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 891

 Score =  304 bits (779), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 117/531 (22%), Positives = 194/531 (36%), Gaps = 45/531 (8%)

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYSHG---NLFYANPSFLLLTKYKSVDDIEIAGGLST 368
              + +  +   +  +  P     +S      +   N        + S  +         
Sbjct: 91  EQEYKQQADFLSQLYNSVPCGILQFSTDPEHRIINVNRMVWEAYGFGSEAEYRSVIRSPY 150

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
            L + +         V     D   +A       ++ +         +         E +
Sbjct: 151 DLVSDQ-DRKWIEDLVDGLVLDGDTVAY--IRQGVRRDGRQIWISVVMGRIVNADGLEVI 207

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQ------LCSILEATSDGIAIINR---------EGI 473
               +  +  + R  + ++E E  Q      L + +      I  +N          EG 
Sbjct: 208 --QAVFTDITELR--RMELEQERQQMIENRSLQAAICTACPLIMSVNLTRDTFNCFIEGQ 263

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT---PSVMNHYLTEILSLDLRQTLEKITL 530
            L    A  +   Y        P      Q          H +    + +    +E   +
Sbjct: 264 ELY---AGKRQGSYSGMLEYFCPLVYPAYQEDYISHFKREHVMERFAAGEREIYMEFRQI 320

Query: 531 GSTKEEKLLSLRIIIKKLPFSSCYSLTM------HDISEWKQEKNKLSHAKKIAEKESSH 584
           G   E   +SL+II  + PF+      +         +E  +++  L  A   A+  +  
Sbjct: 321 GKDDEYHWISLQIIYVENPFNGDMLAIILVKVLDAQRAEQARQEQLLRDALASAKAANRA 380

Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
           KSDFL+R+SH+IRTP+ AIIG S +    +     +    +    ID S   +L ++ND+
Sbjct: 381 KSDFLSRMSHDIRTPMNAIIGMSTI---GQLKLGDDRSVQDCFRKIDASSRYLLSLINDI 437

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRS 703
           LD+SKIE+GKM L  E     E + E   +V   A EK+I         + +    D   
Sbjct: 438 LDMSKIETGKMELSQEYFDFAELIGEIDQIVYPQAQEKKIRYEIYHEEPLEQYYVGDSLR 497

Query: 704 VKQIALNILSNAIHFTPSGG--QIIISTTHTSNE--EVILRVRDTGVGMTNYELEKAMKP 759
           VKQI LN+LSNA+ FT + G  QI I     +N    +   VRD+G+GM+     +  +P
Sbjct: 498 VKQILLNLLSNALKFTSADGLIQINIQEQKRTNGFSYIRFCVRDSGIGMSKEFRSRIFQP 557

Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           F Q          G+GLGL +   +V    G   + S   KG    +  PL
Sbjct: 558 FEQESPEAARNNVGSGLGLSIVYNLVQLMGGTIEVESEKNKGAAFTVTIPL 608



 Score = 39.2 bits (90), Expect = 3.1,   Method: Composition-based stats.
 Identities = 11/133 (8%), Positives = 34/133 (25%), Gaps = 17/133 (12%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFK----MIGMRLCDVSDILHIDPNNHIGDLLKRQNT 142
           ++ D    +  ++  + +  G  +      +I      VSD       + +  L+   +T
Sbjct: 115 FSTDPEHRIINVNRMVWEAYGFGSEAEYRSVIRSPYDLVSDQDRKWIEDLVDGLVLDGDT 174

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF----GIVHVNRVDNDPRALGK 198
                     +G  +++ + +                G      +              +
Sbjct: 175 VAYIRQGVRRDGRQIWISVVM---------GRIVNADGLEVIQAVFTDITELRRMELEQE 225

Query: 199 RLDKKFSHLHEIK 211
           R     +   +  
Sbjct: 226 RQQMIENRSLQAA 238


>gi|109898070|ref|YP_661325.1| PAS/PAC sensor hybrid histidine kinase [Pseudoalteromonas atlantica
           T6c]
 gi|109700351|gb|ABG40271.1| PAS/PAC sensor hybrid histidine kinase [Pseudoalteromonas atlantica
           T6c]
          Length = 660

 Score =  304 bits (779), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 85/522 (16%), Positives = 177/522 (33%), Gaps = 26/522 (4%)

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYK 355
                Y    +       + +    +   +     P F++   + + + N ++      +
Sbjct: 22  ARIRAYDWQSSPIGQPEDWPQSLKTSVRLLLSSGHPMFIWWGEHLIQFYNDAYASTLGPE 81

Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ--WNRENSLAM 413
                    G        ++    A +   +          + RL   +     E     
Sbjct: 82  RHPSALGQQGRD---CWAEIWPEIAPQMEQVLTGKGHTWHENQRLFITRNGVREEMYWTY 138

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII-NREG 472
           ++ P +  N          +  E  +  + +  M+    +  S+ +     + I+   E 
Sbjct: 139 SYSPIDDPNSANGIGGVLVVCNETTEQVLAEHAMKTAEARWRSLFDQAPSFMCIVQGPEH 198

Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
                N    KL G   +D L +     + +         L ++                
Sbjct: 199 RFEYANLNYFKLLG--KQDFLGEKVIDVVPEVDAQGFIALLDKVFESGESH-HGIEMPLV 255

Query: 533 TKEEKLLSLRIIIKKL----PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
                 + +  I + +       S   +  ++++E            +  +++   K +F
Sbjct: 256 VGNGAPIYIDFIYQPIMNASGHVSGILVEGNNVTERVMA-------NRSLQEQDKLKDEF 308

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
           LA ++HE+R PL  I   SE++ N       +P+     + + R    +  +++DLLD+S
Sbjct: 309 LAMLAHELRNPLAPIRNVSEILLNMEQR---DPKLKNIGDILARQVRHMTHLMDDLLDVS 365

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIA 708
           +I    +NL  EP +  + V   I   Q   + K+  +          +  D   + Q  
Sbjct: 366 RISQNLINLQLEPTNFSDIVDLTIESQQSALDTKQHTLEVVDTPQDLYVNGDSTRLVQSL 425

Query: 709 LNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
            N+L+NAI +TP GG I +       E V + + D G G+      K  + F Q+  +  
Sbjct: 426 SNVLNNAIKYTPEGGHITLEC-VADIETVQVIISDNGYGICPSMQGKVFELFAQVQQTLD 484

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFP 809
               G G+GL + + +V  + G   + S     G+   I  P
Sbjct: 485 RSQGGLGIGLNIVQRLVQMHGGSISVSSQGLGHGSCFTITLP 526


>gi|46200837|ref|ZP_00207864.1| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 794

 Score =  304 bits (779), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 93/644 (14%), Positives = 212/644 (32%), Gaps = 57/644 (8%)

Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD 252
            R            L    +    V     +++  Q+    L   +   +  +  A  DD
Sbjct: 52  ARRPAGDAAILAGALDSESRAVLVVASIGAELYRNQAARRLLGPASDPLAPLKSLAADDD 111

Query: 253 VLKTEKYPLLTSE--ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310
               E   L  +    +    +    +    +                ++         +
Sbjct: 112 RALAEMERLDAAASVGAPRRTEVSLVSAGGGREWFTLEVRPAGTPQAVAWIAEDVSARRA 171

Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
           +         L  + VD  P+  +     G + Y N            + +         
Sbjct: 172 IEETLRRENELLSDFVDLLPVGCYSADADGTVRYVNQRLAEWLGKSGDEIVGHNL---AD 228

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
           +     +       + L                             +     ++  E   
Sbjct: 229 VFGIVPNPEEERAELRLRGRSGEVF------------------QALVAHSVFDEGGEMFT 270

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
           ++ +  + V  +  ++ +     +   + +    GIA+++ +G + + N A+  + G   
Sbjct: 271 RSVVVRDLVPEQQWEKALRAAERRFRWLFDDAPVGIALVDLDGGVGACNLALQAMLGIDR 330

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
           +D++ +P    + +   +  +  L ++++     T         +   +  L +      
Sbjct: 331 DDMIGRPVIDVVAEENRAAASEQLGKVIAGSTPGT-HLEVRLKGRRNLIAQLFVSPSHED 389

Query: 550 FS-SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
              S   +   D +E +  + + + ++K+              V+H+    LTA+IGF +
Sbjct: 390 GEISGLVIHFIDATEQRNLEMQFAQSQKM-----QAMGQLAGGVAHDFNNLLTAMIGFCD 444

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
           ++  +     G+P + +    + ++ N    +V  LL  S+ ++    L    +++ +A+
Sbjct: 445 LLLQRHGA--GDPSFADIMQ-VKQNANRAASLVRQLLAFSRRQA----LQPRLLNVTDAL 497

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
           +E  +L++     + I +R      +  +  D     Q+ +N+  NA    P GG + I 
Sbjct: 498 AELSNLLR-RLLGETIELRMVHGRALGLVRVDPGQFDQVIINLAVNARDAMPGGGALTIR 556

Query: 729 TT--------------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           T                 + + V + V DTG G+    L +  +PF     S +  G GT
Sbjct: 557 TNTVHVDQPVQRGPELMPAGDYVQIEVADTGTGIGKENLARIFEPFF----STKEVGAGT 612

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
           GLGL     +V    G  ++ S P +GT+  I  P  D     +
Sbjct: 613 GLGLSTVYGIVRQTDGFIFVESEPGQGTIFSIYLPRIDADPAAE 656



 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/305 (11%), Positives = 85/305 (27%), Gaps = 25/305 (8%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK 146
           ++ DA G ++ +++ L + +G    +++G  L DV   +  +P     +L          
Sbjct: 195 YSADADGTVRYVNQRLAEWLGKSGDEIVGHNLADV-FGIVPNPEEERAEL---------- 243

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                + G +  V   L A  ++    E   F    +V     +       +  +++F  
Sbjct: 244 ----RLRGRSGEVFQALVAHSVFDEGGEM--FTRSVVVRDLVPEQQWEKALRAAERRFRW 297

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSP--PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
           L +      ++      + +            ++ +          ++        L   
Sbjct: 298 LFDDAPVGIALVDLDGGVGACNLALQAMLGIDRDDMIGRPVIDVVAEENRAAASEQLGKV 357

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
              S P       +   +    Q F +  +   E    + H    +     +     + +
Sbjct: 358 IAGSTPGTHLEVRLKGRRNLIAQLFVSPSHEDGEISGLVIHFIDATEQRNLEMQFAQSQK 417

Query: 325 TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
                 +       G     N     +  +  +  ++  G              NA +  
Sbjct: 418 MQAMGQLA-----GGVAHDFNNLLTAMIGFCDL-LLQRHGAGDPSFADIMQVKQNANRAA 471

Query: 385 MLYRS 389
            L R 
Sbjct: 472 SLVRQ 476


>gi|90419334|ref|ZP_01227244.1| two-component, nitrogen fixation sensor protein fixL [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90336271|gb|EAS50012.1| two-component, nitrogen fixation sensor protein fixL [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 630

 Score =  304 bits (779), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 97/624 (15%), Positives = 219/624 (35%), Gaps = 34/624 (5%)

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY--YAHKDDVLKT 256
             +     L     G    +     I   Q      R    V  LT      H DD    
Sbjct: 15  SAENALRALQAAGVGTWRFDPVAGTISLSQIAADRFRTGIDVQPLTALLDRLHPDDRAIA 74

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
           E+     +  S +         +  +   +     +   +             +     +
Sbjct: 75  ERA-FGAAVPSGIDIDVRSMAASGKEEWLRLRGRAI-EEADGGSAIHGVLADITSRKAAE 132

Query: 317 EGENLTPETVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
              N     V    +     S   L    N     +  Y +   +       T+L     
Sbjct: 133 NANNRLAAIVASADVAIIGKSLDGLVTDWNRGAEAIFGYSAAQIVGQPI---TMLLPEGQ 189

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
            D   +    L+R +R            +      + ++       +     +  + +  
Sbjct: 190 EDEERVFMERLHRGER----VEHFETRRRRADGEIIDVSLTLSPVWDAAGRLVGASKVAR 245

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
           +   TR    ++     +L  +L+   D + +I+  GI+ S +    +LFG+  ++++ +
Sbjct: 246 DITTTRRALTELAEREARLQLVLDTVPDAMIVIDTAGIMQSFSATAERLFGHRPDEVIGR 305

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQT--LEKITLGSTKEEKLLSLRIIIKKLPFSSC 553
             ++ +        + YL   L+   R+   + ++ +G+ K+     + + + ++     
Sbjct: 306 NISMLMPSPYREQHDQYLARYLATGERRIIGIGRVVVGARKDGSTFPMELSVGEMQSGEN 365

Query: 554 --YSLTMHDISEWKQEKNKLSHAKKIAEKESS--HKSDFLARVSHEIRTPLTAIIGFSEV 609
             ++  + D++E +  + +L   +      S      +  + ++HE+  PLTA   + + 
Sbjct: 366 RLFTGFVRDLTERQNTQRRLQELQAEVIHMSRYTALGEMASTLAHELNQPLTAAANYLKG 425

Query: 610 IKNQRFGPLGN--PRYIEYANYIDRSGNLVLDIVNDLLDI-SKIESGKMNLHFEPVSLDE 666
            +    G   +  P   +  +           I+  L D  ++ ES          +L  
Sbjct: 426 ARRLLDGGDADNLPTVRDAVDRAADQALRAGQIIRRLRDFVARRES-----ERRIENLPT 480

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS--GGQ 724
            + EA +L  + A E  + +   FA     +LAD   V+Q+ LN++ NA+         +
Sbjct: 481 LIEEASALALVGAKETGVRVSFDFAPEAALVLADKVQVQQVLLNLIRNAVEAMQETPRRE 540

Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
           +I++++   +E V + V DTG G+     E+  +PF         + +G G+GL +++ +
Sbjct: 541 LIVASSLREDEMVRVDVTDTGTGIAADVAEQLFQPFVT------SKAQGMGVGLSISRTI 594

Query: 785 VDANMGKFYIFSTPAKGTLIEIIF 808
           ++A+ G  +    P  GT+  +  
Sbjct: 595 IEAHGGHLWAEPNPDGGTIFRLTL 618



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 39/385 (10%), Positives = 102/385 (26%), Gaps = 17/385 (4%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG-KTTLW 150
            G + + +       G  A +++G  +  +      D      + L R       +T   
Sbjct: 155 DGLVTDWNRGAEAIFGYSAAQIVGQPITMLLPEGQEDEERVFMERLHRGERVEHFETRRR 214

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
             +G  + V + L+  P++       G     +                 + +   + + 
Sbjct: 215 RADGEIIDVSLTLS--PVWDAAGRLVGASK--VARDITTTRRALTELAEREARLQLVLDT 270

Query: 211 KKGHSSVEKEKYDIFSQQSPPPHL------RMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
                 V      + S  +    L       +  +  S+     +++   +     L T 
Sbjct: 271 VPDAMIVIDTAGIMQSFSATAERLFGHRPDEVIGRNISMLMPSPYREQHDQYLARYLATG 330

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
           E   +           +  T        +  S E+  +       +              
Sbjct: 331 ERRIIGIGRVVVGARKDGSTFPMELSVGEMQSGENRLFTGFVRDLTERQNTQRRLQELQA 390

Query: 325 TVDKCPIPFFVYSHGNLFYA------NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
            V        +    +            +   L   + + D   A  L T+ DA   + +
Sbjct: 391 EVIHMSRYTALGEMASTLAHELNQPLTAAANYLKGARRLLDGGDADNLPTVRDAVDRAAD 450

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
            A++   + R  R  +A       I+         + +    A +    +  +      +
Sbjct: 451 QALRAGQIIRRLRDFVARRESERRIENLPTLIEEASALALVGAKETGVRVSFDFAPEAAL 510

Query: 439 DTRINKRKMEIEVMQLCSILEATSD 463
                 +  ++ +  + + +EA  +
Sbjct: 511 VLADKVQVQQVLLNLIRNAVEAMQE 535



 Score = 48.1 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 32/257 (12%), Positives = 70/257 (27%), Gaps = 27/257 (10%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTWY--- 144
           ID  G ++  S    +  G+   ++IG  +  +    + + ++  +   L          
Sbjct: 278 IDTAGIMQSFSATAERLFGHRPDEVIGRNISMLMPSPYREQHDQYLARYLATGERRIIGI 337

Query: 145 -GKTTLWPIEGTNLYVPIDLA-ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
                    +G+    P++L+        NR F+GF         R   + +   +RL +
Sbjct: 338 GRVVVGARKDGSTF--PMELSVGEMQSGENRLFTGF--------VRDLTERQNTQRRLQE 387

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
             + +  + +  +  E           P                Y      L        
Sbjct: 388 LQAEVIHMSRYTALGEMASTLAHELNQPLTAA----------ANYLKGARRLLDGGDADN 437

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS-LSAYFDEGENL 321
                   ++     +   Q  ++      +  S+   E L      +   A     E  
Sbjct: 438 LPTVRDAVDRAADQALRAGQIIRRLRDFVARRESERRIENLPTLIEEASALALVGAKETG 497

Query: 322 TPETVDKCPIPFFVYSH 338
              + D  P    V + 
Sbjct: 498 VRVSFDFAPEAALVLAD 514


>gi|117624412|ref|YP_853325.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli APEC O1]
 gi|115513536|gb|ABJ01611.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and RojN [Escherichia coli APEC O1]
          Length = 933

 Score =  304 bits (779), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 98/427 (22%), Positives = 172/427 (40%), Gaps = 35/427 (8%)

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
           +     L  I+      L +  I                 E        +      E  Q
Sbjct: 287 VPVDKVLERIRM-----LILNAILLNVLAGAALFTLARMYERRIFIPAESDALRLEEHEQ 341

Query: 454 L-CSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
               I+ +   GI I+   +G+ + +N            +  ++                
Sbjct: 342 FNRKIVASAPVGICILRTADGVNILSNELAHTYLNMLTHEDRQR---------------- 385

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571
            LT+I+       ++      T     L +  +  +    +     + D+S   + +  L
Sbjct: 386 -LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSSRVKMEESL 440

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
               + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R       ++
Sbjct: 441 QEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR---LVTAMN 496

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
            S +L+L I++D+LD SKIES ++ +     S  E ++   +        K++ +     
Sbjct: 497 NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFIE 556

Query: 692 NNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
            ++P  +  D   ++Q+  N+LSNAI FT +G  I++       + + +RVRDTGVG+  
Sbjct: 557 PDVPVALNGDPMRLQQVISNLLSNAIKFTDTG-CIVLHVR-ADGDYLSIRVRDTGVGIPA 614

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+   +  PL
Sbjct: 615 KEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIPL 674

Query: 811 YDTSHPH 817
           Y   +P 
Sbjct: 675 YGAQYPQ 681


>gi|116197335|ref|XP_001224479.1| hypothetical protein CHGG_06823 [Chaetomium globosum CBS 148.51]
 gi|88178102|gb|EAQ85570.1| hypothetical protein CHGG_06823 [Chaetomium globosum CBS 148.51]
          Length = 747

 Score =  304 bits (779), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 105/525 (20%), Positives = 197/525 (37%), Gaps = 34/525 (6%)

Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVD 358
                       ++             D  P+   + S    +  A+  FL      + D
Sbjct: 3   GGAPQIVAMQPETSSTQPAGRDVGLIFDLAPLALLILSPTWRIERASARFLSDWHVSTND 62

Query: 359 DIEI------AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
            I           L  L           I   +  R++RT    +   H + W+      
Sbjct: 63  CIGQSLLPFLEKQLRPLRPTHLAHVTAFIDDAIAARAERTTNPFN-TSHNVSWHARVVPV 121

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINRE 471
            +              P    E + V       +          +++   D  I +++ +
Sbjct: 122 FSDHELLSIFLEWHQGPLTVTEDDLVKPGFLTDEA------FRILVDGVKDYAIFLLDTK 175

Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
           G I + N+    L GY  ++I+ K F++F  +    +    +   + +   +  ++    
Sbjct: 176 GYIATWNQGAQLLKGYERDEIIGKHFSIFYSKGDIDIKKPEMELEICMREGRVEDEGWRY 235

Query: 532 STKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
             K+       +II  +  +     +     D+SE K  +++L       E+    KSDF
Sbjct: 236 R-KDGSRFWANVIITAVYKNGVHVGFGKVTRDLSERKSAESRLI---AAYEESEKLKSDF 291

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
           LA +SHEIRTP+  ++    ++ +         R  +    +D SG ++L I+ND+LD S
Sbjct: 292 LANMSHEIRTPMHGMLSACTLLLDTPLST----RQRDIVGIMDESGEVLLQIINDILDYS 347

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQI 707
           K+ SG  ++H + V +   ++  +   Q       +L     A ++P+ +  D    +QI
Sbjct: 348 KLASGTFSIHSDIVGVTSIITSVVRGAQTTLPP-SVLFEVFLAPDLPKSVQGDPLRYRQI 406

Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQI 763
             NI+ NA  FT  G  I +  +  S +     V+  V DTG+G+          PF Q 
Sbjct: 407 LQNIVGNAAKFTEKGS-IRVKASVQSEDVDSYTVLTEVTDTGIGVPKEGAPSLFTPFMQF 465

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP-AKGTLIEII 807
             +   + +GTGLGL +AK++ +   G+      P   G++    
Sbjct: 466 DTTTTKQYKGTGLGLSIAKSLTELMGGRIGYRPNPDGHGSVFWFT 510



 Score = 42.3 bits (98), Expect = 0.31,   Method: Composition-based stats.
 Identities = 24/187 (12%), Positives = 50/187 (26%), Gaps = 14/187 (7%)

Query: 38  KSKKENPCHDSF---EQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGY 94
               ++     F    Q   T    + V      D    F            + +D  GY
Sbjct: 120 PVFSDHELLSIFLEWHQGPLTVTEDDLVKPGFLTD--EAFRILVDGVKDYAIFLLDTKGY 177

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL--LKRQNTWYGKTTLWPI 152
           +   ++      G    ++IG           ID      +L    R+     +   +  
Sbjct: 178 IATWNQGAQLLKGYERDEIIGKHFSIFYSKGDIDIKKPEMELEICMREGRVEDEGWRYRK 237

Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFG-IVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
           +G+  +  + + A+     +       GFG +           +      ++   L    
Sbjct: 238 DGSRFWANVIITAVYKNGVH------VGFGKVTRDLSERKSAESRLIAAYEESEKLKSDF 291

Query: 212 KGHSSVE 218
             + S E
Sbjct: 292 LANMSHE 298


>gi|307138876|ref|ZP_07498232.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli H736]
          Length = 708

 Score =  304 bits (779), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 98/427 (22%), Positives = 172/427 (40%), Gaps = 35/427 (8%)

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
           +     L  I+      L +  I                 E        +      E  Q
Sbjct: 62  VPVDKVLERIRM-----LILNAILLNVLAGAALFTLARMYERRIFIPAESDALRLEEHEQ 116

Query: 454 L-CSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
               I+ +   GI I+   +G+ + +N            +  ++                
Sbjct: 117 FNRKIVASAPVGICILRTADGVNILSNELAHTYLNMLTHEDRQR---------------- 160

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571
            LT+I+       ++      T     L +  +  +    +     + D+S   + +  L
Sbjct: 161 -LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSSRVKMEESL 215

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
               + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R       ++
Sbjct: 216 QEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR---LVTAMN 271

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
            S +L+L I++D+LD SKIES ++ +     S  E ++   +        K++ +     
Sbjct: 272 NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFIE 331

Query: 692 NNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
            ++P  +  D   ++Q+  N+LSNAI FT +G  I++       + + +RVRDTGVG+  
Sbjct: 332 PDVPVALNGDPMRLQQVISNLLSNAIKFTDTG-CIVLHVR-ADGDYLSIRVRDTGVGIPA 389

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+   +  PL
Sbjct: 390 KEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIPL 449

Query: 811 YDTSHPH 817
           Y   +P 
Sbjct: 450 YGAQYPQ 456


>gi|14193095|gb|AAK55818.1|AF219111_2 putative histidine kinase [Streptococcus pneumoniae]
          Length = 449

 Score =  304 bits (779), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 87/376 (23%), Positives = 165/376 (43%), Gaps = 33/376 (8%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           R+ +  +E E  +L SIL   +DG+   NR G I+  N    K  G   ED+L +     
Sbjct: 83  RLTQENLEQESKRLNSILFYMTDGVLATNRRGQIIMINDTAKKQLGLVKEDVLNRSILEL 142

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SL 556
           L+      +   +         Q+ E +        + L+LR+    +   S +      
Sbjct: 143 LKIEENYELRDLI--------TQSPELLLDSQDINGEYLNLRVRFALIRRESGFISGLVA 194

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            +HD +E ++E+ +                 F++ VSHE+RTPLT++  + E +      
Sbjct: 195 VLHDTTEQEKEERERRL--------------FVSNVSHELRTPLTSVKSYLEALDEGALC 240

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV- 675
               P   ++        N ++ +V DLL +S I++   +L  E ++    ++  ++   
Sbjct: 241 ETVAP---DFIKVSLDETNRMMRMVTDLLHLSCIDNATSHLDVELINFTAFITFILNRFD 297

Query: 676 --QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
             +    EK+  +   +  N   +  D   + Q+  NIL+NAI ++P GG+I +    T 
Sbjct: 298 KMKGQEKEKKYELVRDYPINSIWMEIDTDKMTQVVDNILNNAIKYSPDGGKITVRMKTTE 357

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
           ++ + L + D G+G+   +L +    F ++  ++     GTGLGL +AK ++  + G  +
Sbjct: 358 DQMI-LSISDHGLGIPKQDLPRIFDRFYRVDRARSRAQGGTGLGLSIAKEIIKQHKGFIW 416

Query: 794 IFSTPAKGTLIEIIFP 809
             S   KG+   I+ P
Sbjct: 417 AKSEYGKGSTFTIVLP 432


>gi|254504175|ref|ZP_05116326.1| hypothetical protein SADFL11_4214 [Labrenzia alexandrii DFL-11]
 gi|222440246|gb|EEE46925.1| hypothetical protein SADFL11_4214 [Labrenzia alexandrii DFL-11]
          Length = 827

 Score =  304 bits (779), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 88/394 (22%), Positives = 158/394 (40%), Gaps = 47/394 (11%)

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFL-----EQNTPS 507
           L S+L +   G+A+ + +  +L+ N+    +  YP E +   +     +           
Sbjct: 9   LESVLSSMIQGVAVFDEDLKLLAWNQKFRDMRHYPDELVFEGQSVEALIRFDAEHGEFGP 68

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQE 567
                +   L   +R   E     +  +   + ++           +  T  DI+E    
Sbjct: 69  GDVDEIVRGLMQKVRYFEEHAFERARPDGSYMEVKGGPLP---GGGFVSTYSDITERVAA 125

Query: 568 KNKLSHAKKIAEKE----------------------------SSHKSDFLARVSHEIRTP 599
           +++L    +  ++                             +  K  FLA +SHEIRTP
Sbjct: 126 RHQLLRQMEELKEARQATLDMMEKAEANRKRAEELREKAESATKAKDMFLAAMSHEIRTP 185

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           +  ++G  +++ +       +   ++ A  +  S   +L I+ND+LD SKIE+GKM+L  
Sbjct: 186 MNGVVGMIDLLTHTDL----DDEQMQMAATVRDSAFALLTIINDILDFSKIEAGKMDLEM 241

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHF 718
            P+S+ + V      +   A  K +         IP  +  D   ++QI  N+L NA+ F
Sbjct: 242 IPMSILDVVEGVGETMGPNACAKVLDFIAYCDPRIPAEVAGDQVRLRQILFNLLGNAVKF 301

Query: 719 TPSGGQIIISTTH----TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           T +G Q+ +             V  +V+D G+GMT  +     +PF Q   S   R  GT
Sbjct: 302 TEAG-QVTLRVDMNEISEGQATVRYQVQDHGIGMTPEQTANLFQPFQQADVSTTRRFGGT 360

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           GLGL + + +VD   G   + S P  G+   +  
Sbjct: 361 GLGLTIVRRLVDMMGGTIDVESVPGDGSTFTVTL 394



 Score = 43.1 bits (100), Expect = 0.21,   Method: Composition-based stats.
 Identities = 11/150 (7%), Positives = 33/150 (22%), Gaps = 13/150 (8%)

Query: 318 GENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
            + L    +        V+     L   N  F  +  Y      E     + +    +  
Sbjct: 5   RDGLLESVLSSMIQGVAVFDEDLKLLAWNQKFRDMRHYPDELVFEGQSVEALIRFDAEHG 64

Query: 377 DNNAIKPVMLYRSDRT-CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
           +        + R                     + + +   P                  
Sbjct: 65  EFGPGDVDEIVRGLMQKVRYFEEHAFERARPDGSYMEVKGGPLPGG-------GFVSTYS 117

Query: 436 EDVDTRINKRKMEIEVMQL----CSILEAT 461
           +  +    + ++  ++ +L     + L+  
Sbjct: 118 DITERVAARHQLLRQMEELKEARQATLDMM 147


>gi|145299703|ref|YP_001142544.1| two-component system hybrid sensor histidine kinase/response
           regulator [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|142852475|gb|ABO90796.1| two-component system hybrid sensor histidine kinase/response
           regulator [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 698

 Score =  304 bits (779), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 95/455 (20%), Positives = 181/455 (39%), Gaps = 20/455 (4%)

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
           L         A   +   R+         R   +      S A         +Q   N+ 
Sbjct: 122 LAPLAHVSGWASVMMTGLRAPGFSGVLICRHAVMGTFDLKSKAAMQRCRPLISQALVNIA 181

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
                 E V+ +     ++    +  S     SD     + E  +   +       GY  
Sbjct: 182 YRARLQEQVELKT--LALQTSEQRFRSFAGMASDWFWETDTEHRLSYVSAP-----GYHG 234

Query: 490 EDILRKPFTVFLEQNTPSVMNHY--LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
           + ++ +P     +         +     +++L L     +  +   K    + +      
Sbjct: 235 DVLVHQPGQSLYDYAYDRRDPEWGKYRRLIALHLPVRAVRAQVSLVKGPCWMEINAEPCF 294

Query: 548 LPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
                   Y  T  D+    + + +L+ A+  AE  +  KS FLA ++HEIR+P+ A++G
Sbjct: 295 DAAGVFIGYRGTARDVGNQIRREQELARARDEAEAANRAKSQFLAMMTHEIRSPMNAVLG 354

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
             +++++ +  P    +      +   S  L+  I++D+LD SKIES  +  H E +   
Sbjct: 355 MLDLLQHAQLEP----QQQTLLGHATHSARLLQTIIDDVLDFSKIESHTLEFHCETLHPT 410

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ 724
           +     I  +Q  A+ K I++R      +P  +  D   + Q+  N+L NA+ FT  G  
Sbjct: 411 QLCQSLIEPLQARASSKGIILRWLVDEAVPPQLQGDPVRLSQVISNLLGNAVKFTSQGS- 469

Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
           + +      +E + + V DTG+G++  +     +PF Q+ +S   R  GTGLGL ++K +
Sbjct: 470 VSLQLGWR-HERLRVSVTDTGIGISAEDQALLFEPFSQVDSSATRRFSGTGLGLAISKRL 528

Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819
           V+   G+  + S P +G+      P    + P +C
Sbjct: 529 VELMGGEIRLQSAPGQGSCFWFELP--GMALPCEC 561



 Score = 46.6 bits (109), Expect = 0.016,   Method: Composition-based stats.
 Identities = 27/251 (10%), Positives = 61/251 (24%), Gaps = 17/251 (6%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMI---GMRLCDVSDILHIDPNNHIGDLLKRQNTW 143
           W  D    L  +S       G +   ++   G  L D +             L+      
Sbjct: 216 WETDTEHRLSYVSAP-----GYHGDVLVHQPGQSLYDYAYDRRDPEWGKYRRLIALHLPV 270

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                   +        +++ A P +     F G+RG                  R   +
Sbjct: 271 RAVRAQ--VSLVKGPCWMEINAEPCFDAAGVFIGYRG--TARDVGNQIRREQELARARDE 326

Query: 204 FSHLHEIKKGHSSVEKEKYD-----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
               +  K    ++   +       +        H +++ +  +L  +  H   +L+T  
Sbjct: 327 AEAANRAKSQFLAMMTHEIRSPMNAVLGMLDLLQHAQLEPQQQTLLGHATHSARLLQTII 386

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
             +L   +      E            +     LQ  +      L      ++       
Sbjct: 387 DDVLDFSKIESHTLEFHCETLHPTQLCQSLIEPLQARASSKGIILRWLVDEAVPPQLQGD 446

Query: 319 ENLTPETVDKC 329
                + +   
Sbjct: 447 PVRLSQVISNL 457


>gi|94970016|ref|YP_592064.1| multi-sensor signal transduction histidine kinase [Candidatus
           Koribacter versatilis Ellin345]
 gi|94552066|gb|ABF41990.1| multi-sensor signal transduction histidine kinase [Candidatus
           Koribacter versatilis Ellin345]
          Length = 585

 Score =  304 bits (779), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 78/413 (18%), Positives = 170/413 (41%), Gaps = 33/413 (7%)

Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK--RKMEIEVMQLCS 456
           RL  I +  +   A         +   E + +     +    ++ +   ++E    +L +
Sbjct: 186 RLKAIVYFADRIAAGDLSARIAEDSTDE-IGKVATALDKTARQLQEVFAQVESSRQELEA 244

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           +L +  + +  ++ +G ++  N+ + ++          K      +      +   L   
Sbjct: 245 LLNSMQEAVIAVSNDGRLMWANQRMERMLP-TGIRRNGKIIETVRDPEFLRGVQEALESR 303

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKK 576
                R       + +    +  +                 +HD++E ++ +        
Sbjct: 304 RVTSTR-------VSTLLPGRTFTATTAPMP---GGGAVAVLHDLTETERVE-------- 345

Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
                   + DF+A VSHE+RTPLT+I G++E +         +    E+   I R+   
Sbjct: 346 ------KTRRDFIANVSHELRTPLTSIQGYAETLSE---AFREDDPAREFVEIIRRNAQR 396

Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696
           +  +  DLL ++++ESG+  + F  V+  E ++EA    Q +     I +          
Sbjct: 397 MYRLTEDLLTLARVESGEQRMEFHAVTPGELLAEAELNFQDHHRGAGIELSV-MNTAQGE 455

Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKA 756
           +  D  +++Q+  N+L NA+ +  +GG+I++  +    + V+  +RD G G+ +  L + 
Sbjct: 456 VEVDRDALRQVFSNLLDNAVKYGGTGGKILLG-SRDVEDRVLFYIRDFGPGIPSEHLARL 514

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            + F ++  ++ ++  GTGLGL +AK +V A+ G+    S    G +   I P
Sbjct: 515 FERFYRVDKARSVQSGGTGLGLAIAKHIVRAHGGEIRAESELNHGAVFSFILP 567


>gi|254721257|ref|ZP_05183047.1| sensor histidine kinase ResE [Bacillus anthracis str. A1055]
          Length = 591

 Score =  304 bits (779), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 79/371 (21%), Positives = 153/371 (41%), Gaps = 39/371 (10%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            ++ E  QL SIL + +DG+  +N+EG ++  N           E+       + L +  
Sbjct: 249 ALQQEKEQLASILSSMADGVITLNQEGEVVVINPPAEHFLQVWQEEK-----EIELSKKL 303

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
           PS +      ++  + +Q +         +   + L   +            + D++E +
Sbjct: 304 PSELVELFHLVVESEQQQVVGINLQ----KGNYVVLMTPLYNQTKIRGAVAVLRDMTEER 359

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + +                + DF+A VSHE+RTP+  + G+SE I +            E
Sbjct: 360 RLE--------------KMRQDFIANVSHELRTPMVMLQGYSEAILDDIVQT--KEEINE 403

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           +   I      +  +VN+LLD++++ESG + LH   V +   V +     Q  A +K + 
Sbjct: 404 FVQIIYDESVRLGKLVNELLDLARMESGNVELHIGEVDIHPFVEKIGRKFQGIAKDKEVA 463

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +   F + I +   D   ++Q+  N++ NAI  T +GG + +     +N  +I  V+D+G
Sbjct: 464 LTVDFKDPIEQYPFDADRMEQVLTNLIDNAIRHTNAGGHVTLVIDTKNNG-LIFEVQDSG 522

Query: 746 VGMTNYELEKAMKPFGQIPNSQQI-------RGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
            G+   ++      F +   ++          G        +AK +V  + GK  + S  
Sbjct: 523 AGIPEEDIPFLFDRFYKADKARTRGKKGGTGLGL------AIAKNIVQGHGGKISVSSVV 576

Query: 799 AKGTLIEIIFP 809
            +GT   +  P
Sbjct: 577 GEGTTFSVYLP 587


>gi|254443730|ref|ZP_05057206.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198258038|gb|EDY82346.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 572

 Score =  304 bits (779), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 81/251 (32%), Positives = 139/251 (55%), Gaps = 11/251 (4%)

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           +  K+    L   K  AE+ +  KS+FLA +SHE+RTP+  +IGF+ ++   +     + 
Sbjct: 177 TVAKRTAAFLKA-KDEAEQANMAKSEFLAMMSHELRTPMNGVIGFASLLLETQM----DD 231

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
              ++   I  SG+ +L I+ND+LD SKIE+G+  L     +L   + E IS+    A+E
Sbjct: 232 EQTDFVETIRNSGDSLLSIINDILDFSKIEAGREELELVSFNLQNTLQEVISITTPIASE 291

Query: 682 KRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---- 736
           K + +   +++ +P  ++ D   ++Q+ LN++SNAI FTP GG + I+ T  SN +    
Sbjct: 292 KELKLDLEYSDALPEYVIGDPGKLRQVVLNLVSNAIKFTPDGG-VTITATPNSNSDTHSM 350

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           V + V DTG+G++    ++   PF Q  +S + +  GTGLGL ++K + +   G   I S
Sbjct: 351 VRIAVSDTGIGISKEVQKRLFHPFTQADSSTRRKHGGTGLGLVISKRLSEMMGGDITIDS 410

Query: 797 TPAKGTLIEII 807
           +P +G+     
Sbjct: 411 SPGEGSTFNFT 421


>gi|148264119|ref|YP_001230825.1| multi-sensor signal transduction histidine kinase [Geobacter
           uraniireducens Rf4]
 gi|146397619|gb|ABQ26252.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter
           uraniireducens Rf4]
          Length = 697

 Score =  304 bits (779), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 86/404 (21%), Positives = 169/404 (41%), Gaps = 39/404 (9%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           +++E       S++E  SD I ++  + I+   N+   + FGY   +++  P T  L   
Sbjct: 279 QELERSEELYKSLMEDASDAIVVVGDDEIVKMINKMAEEFFGYNARELVGLPLTKMLLLL 338

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL--SLRIIIKKLPFSSCYSLTMHDIS 562
               +               + +      K   L+   L     K    +       D++
Sbjct: 339 NIENIPKIHKIFKDASKGMHIAEEMQLVKKGGTLVVARLHANSIKSGTENLVQAIFRDVT 398

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           + ++    L  +     + +  K  FL   SHE++TPLT I+G++E+I       + N  
Sbjct: 399 KEREILINLEKSAADLVRLNKMKDSFLGLASHELKTPLTVIMGYAELISTDMADRVDN-T 457

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
            +E    I  + + + +I+ D++D+S I+  ++ L  + V ++  V  ++  +  + + +
Sbjct: 458 VLEMVGNISSAASRLDNIIKDMVDVSMIDEKRLQLKMDDVQINRLVEASVKELSFFFSMR 517

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT------------ 730
           +  +      +IP I  D+  + Q+  N+L NAI FTP GGQI ++T+            
Sbjct: 518 KQELVLHLDESIPTIRGDVLRLMQLLSNVLGNAIKFTPDGGQITVATSAKYLLRSKQPVS 577

Query: 731 ------------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE------ 772
                          +  V + + DTG+G+   +  +    F +  N ++          
Sbjct: 578 DGQQMQPVVNIGKEHHLYVEISISDTGIGIDREDQLRIFDKFYEAGNIEEHSSGKVAFKA 637

Query: 773 -GTGLGLPLAKAMVDANMGKFYIFS---TPA--KGTLIEIIFPL 810
            G GLGL +AK +VD + G+ ++ S    P    G+   I+ PL
Sbjct: 638 KGAGLGLSIAKGIVDMHGGEIWVESSGYNPNSDSGSTFHILLPL 681


>gi|218559136|ref|YP_002392049.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli S88]
 gi|218365905|emb|CAR03647.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli S88]
 gi|315285842|gb|EFU45282.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 110-3]
          Length = 933

 Score =  304 bits (779), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 99/495 (20%), Positives = 186/495 (37%), Gaps = 41/495 (8%)

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
             P+   +             + LT  +S    +                    + ++L 
Sbjct: 223 TLPMGVTILDENGHT-----LISLTGPESKIKGDPRWMQERSWFGY----TEGFRELVLK 273

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV---DTRINK 444
           ++      +      +    E    +              +       E         + 
Sbjct: 274 KNLPPSSLSIVYSVPVDKVLERIRMLILNAILLNVLAGAALFTLARMYERRIFIPAESDA 333

Query: 445 RKMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            ++E        I+ +   GI I+   +G+ + +N            +  ++        
Sbjct: 334 LRLEEHEQFNRKIVASAPVGICILRTADGVNILSNELAHTYLNMLTHEDRQR-------- 385

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                    LT+I+       ++      T     L +  +  +    +     + D+S 
Sbjct: 386 ---------LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSS 432

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + +  L    + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R 
Sbjct: 433 RVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR- 490

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
                 ++ S +L+L I++D+LD SKIES ++ +     S  E ++   +        K+
Sbjct: 491 --LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQ 548

Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           + +      ++P  +  D   ++Q+  N+LSNAI FT +G  I++       + + +RVR
Sbjct: 549 LGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG-CIVLHVR-ADGDYLSIRVR 606

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTGVG+   E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+
Sbjct: 607 DTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGS 666

Query: 803 LIEIIFPLYDTSHPH 817
              +  PLY   +P 
Sbjct: 667 QFTVRIPLYGAQYPQ 681


>gi|228990915|ref|ZP_04150879.1| hypothetical protein bpmyx0001_16760 [Bacillus pseudomycoides DSM
           12442]
 gi|228768852|gb|EEM17451.1| hypothetical protein bpmyx0001_16760 [Bacillus pseudomycoides DSM
           12442]
          Length = 638

 Score =  304 bits (779), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 102/558 (18%), Positives = 218/558 (39%), Gaps = 45/558 (8%)

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
           LP   D   I  +    K+    ++         +      +        ++     ++ 
Sbjct: 107 LPWPNDETIILFSLRPVKREGTVIE----VVGSTVDITKRKNAEDELKVTKDRLESFINH 162

Query: 329 CPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
                 ++   G++  AN ++  +  +   + +        L   P    N  ++ +   
Sbjct: 163 NVDAITIFDLDGHMIQANKAYEKIFGWSEKEILGKK-----LPCIPDFLMNETLEFIKNI 217

Query: 388 RSDRTCIAASARLHTIQ-WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
           ++         RL T++    +  + ++       +     +  +GI  +  + +  +R+
Sbjct: 218 KNTNIQDPVITRLETVRQRKDKTLIDVSLTVSPILDLRGNVIALSGICRDISERKQAERE 277

Query: 447 MEIEVMQL-------CSILEATSDGIAI--INREGI---ILSTNRAVSKLFGYPVEDILR 494
           +     QL        +++E  +D + +  +N +      +  N    K FGY  E +L 
Sbjct: 278 LHRLHQQLKDSEMKYRALIEQATDAVYVVELNEDQFPTGFIEVNPVGCKRFGYSREKLLS 337

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554
            PF   +  ++  ++   + +I       TL+   +  T +       + +  L   + +
Sbjct: 338 MPFPSTVPPDS-PMVKRVIKKIREGQTSFTLQDEFVFPTGKTITTEFGVRVFNLNGKNVF 396

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E  + +  L  ++K+A             ++HEI  PLTA+ GF  ++K+  
Sbjct: 397 LSISRDITERLKTEELLRKSEKLAVV-----GQLATAIAHEINNPLTAMKGFMHLLKSSE 451

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                N +   Y + +      +  I N+ + ++K ++    L  +   L+  + + + +
Sbjct: 452 -----NKKNEHYIDIVLSEIERIESITNEFMALAKPQA----LEIKTNDLNVLMKQVVMI 502

Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-TS 733
           +Q  A    I I T F ++   IL +   +KQ+ +NIL NAI  T  GG+++I   +   
Sbjct: 503 LQPQAMMNNIQITTEFTSDTSFILCEGNQLKQVFINILKNAIEATAMGGEVLIQIEYIPD 562

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
             +V +R  D G G+    +    +PF        I+ +G GLGL +   M++ + GK  
Sbjct: 563 KNQVNIRFTDYGCGIEKDRIPYLGEPFY------SIKEDGVGLGLMICYKMIEKHQGKIL 616

Query: 794 IFSTPAKGTLIEIIFPLY 811
           I S   KGT I +  P+ 
Sbjct: 617 IESEVGKGTTINVNLPIS 634



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/266 (11%), Positives = 74/266 (27%), Gaps = 27/266 (10%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRL---CDVSDILHIDPNNHIGDL-LKRQNTWYG 145
           D  G++ + ++   K  G    +++G +L    D      ++   +I +  ++       
Sbjct: 171 DLDGHMIQANKAYEKIFGWSEKEILGKKLPCIPDFLMNETLEFIKNIKNTNIQDPVITRL 230

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +T     + T + V + ++  PI           G  I               RL ++  
Sbjct: 231 ETVRQRKDKTLIDVSLTVS--PILDLRGNVIALSG--ICRDISERKQAERELHRLHQQLK 286

Query: 206 HLHEIKKGHSSVEKEK---YDIFSQQSPPPHLRM-----------KNKVSSLT-EYYAHK 250
                 +       +     ++   Q P   + +           + K+ S+        
Sbjct: 287 DSEMKYRALIEQATDAVYVVELNEDQFPTGFIEVNPVGCKRFGYSREKLLSMPFPSTVPP 346

Query: 251 DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310
           D  +       +   ++S   Q++F        T +               +LS     +
Sbjct: 347 DSPMVKRVIKKIREGQTSFTLQDEFVFPTGKTITTEFGVRVFN--LNGKNVFLSISRDIT 404

Query: 311 LSAYFDEGENLTP--ETVDKCPIPFF 334
                +E    +     V +      
Sbjct: 405 ERLKTEELLRKSEKLAVVGQLATAIA 430


>gi|332093154|gb|EGI98214.1| sensor kinase protein rcsC [Shigella boydii 5216-82]
          Length = 949

 Score =  304 bits (779), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 99/495 (20%), Positives = 186/495 (37%), Gaps = 41/495 (8%)

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
             P+   +             + LT  +S    +                    + ++L 
Sbjct: 239 TLPMGVTILDENGHT-----LISLTGPESKIKGDPRWMQERSWFGY----TEGFRELVLK 289

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV---DTRINK 444
           ++      +      +    E    +              +       E         + 
Sbjct: 290 KNLPPSSLSIVYSVPVDKVLERIRMLILNAILLNVLAGAALFTLARMYERRIFIPAESDA 349

Query: 445 RKMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            ++E        I+ +   GI I+   +G+ + +N            +  ++        
Sbjct: 350 LRLEEHEQFNRKIVASAPVGICILRTADGVNILSNELAHTYLNMLTHEDRQR-------- 401

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                    LT+I+       ++      T     L +  +  +    +     + D+S 
Sbjct: 402 ---------LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSS 448

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + +  L    + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R 
Sbjct: 449 RVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR- 506

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
                 ++ S +L+L I++D+LD SKIES ++ +     S  E ++   +        K+
Sbjct: 507 --LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQ 564

Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           + +      ++P  +  D   ++Q+  N+LSNAI FT +G  I++       + + +RVR
Sbjct: 565 LGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG-CIVLHVR-ADGDYLSIRVR 622

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTGVG+   E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+
Sbjct: 623 DTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGS 682

Query: 803 LIEIIFPLYDTSHPH 817
              +  PLY   +P 
Sbjct: 683 QFTVRIPLYGAQYPQ 697


>gi|298528766|ref|ZP_07016170.1| PAS/PAC sensor signal transduction histidine kinase
            [Desulfonatronospira thiodismutans ASO3-1]
 gi|298512418|gb|EFI36320.1| PAS/PAC sensor signal transduction histidine kinase
            [Desulfonatronospira thiodismutans ASO3-1]
          Length = 1207

 Score =  304 bits (779), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 97/630 (15%), Positives = 208/630 (33%), Gaps = 44/630 (6%)

Query: 201  DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
                    E+  G    +K    +    SP   + M           A +          
Sbjct: 595  AGLDDEFQELIDGFQYGKKPACALNVSTSPGLQVVMDPGTDCEGCPLAEQYSDRSGFSAR 654

Query: 261  LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
            L               +I  N     +      + +    + +       +     E   
Sbjct: 655  LEVEG---FVLGLITVSIPANLAGDLEEQDLFNSLAWTIAQGIQRIRLEKIRRSQRERLK 711

Query: 321  LTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDD----IEIAGGLSTLLDAPKL 375
                 + +      + +        N ++         +     +E   G        K 
Sbjct: 712  NYERIISRINDGMAIVAPDYRYIIVNDAYQREFGKPREEIEGHTVEELVGKEVFYSKIKP 771

Query: 376  SDNNAIKPVMLYRSDRTCIAASARLHTIQWNR--ENSLAMTFIPFEKANQFPENMPQNGI 433
              + A              A    +    +              +    +          
Sbjct: 772  RLDTA-------------FAGEEVVSEDSFPGLDGVLKYKVMNYYPFYEKDGSVAGVVAT 818

Query: 434  EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
              +  + +  +  +      L ++ E   +GI + +     +  N+  S +FG  +E   
Sbjct: 819  GKDFTEQKKAEDALRESEELLRTVNETVGEGIVLKDASDRFVHWNKTASDIFGLDIEHAR 878

Query: 494  RKPFT----VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG-STKEEKLLSLRIIIKKL 548
             +        F+ ++             +L   +    + +G     +    L+I  + +
Sbjct: 879  GQTPEVFDIKFIHEDGTEYAGDDFPSQHTLRTGEPCNNVIMGIKRNNQSTTWLKINTRPI 938

Query: 549  PFSSC-----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
                        ++  DI+E K  + KL    +  +K ++ K +  + V+H+++ P+   
Sbjct: 939  FTPGEAKPYLVVVSFSDITERKHAEEKLKSMNQQLQKSNAEKDELFSFVAHDLKAPIAGF 998

Query: 604  IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
            +  +EV+ N+ F         E  + + +S   +  ++ DLL  ++++ G +    E V 
Sbjct: 999  LSLTEVL-NKYFDDFSMDELREMLSEMHKSSEGLHALLEDLLQWARVKKGMLVYTPESVC 1057

Query: 664  LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
            L++ V+  ISL +  A++K I +  +    +  + AD + +  +  N+L NA+ FT  GG
Sbjct: 1058 LNDLVTAGISLARSVADQKDINLWNNVPRGM-NLYADQKMIYSVIRNLLFNALKFTYQGG 1116

Query: 724  QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG----EGTGLGLP 779
             + I   H     V + + D G+GM      +       I   + ++G    +GTGLGL 
Sbjct: 1117 NVSIH-AHKQGSMVKIMIHDDGMGMDQDTAARVFA----IDKRKSVKGTDGEKGTGLGLA 1171

Query: 780  LAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            L K  V+ + G+ +I S P +GT +    P
Sbjct: 1172 LCKEFVEQHGGRIWIDSEPGQGTTVYFTVP 1201



 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 62/549 (11%), Positives = 156/549 (28%), Gaps = 35/549 (6%)

Query: 59  QESVSNTNYLDSENTFVFDPIP----RTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI 114
           Q++   T+    E     +P        V   +     G    ++  L +  G  + + +
Sbjct: 3   QKTSPPTDQGSIEPPVFENPQGILMNAPV-CIFTTTPDGRYLSVNNTLARMHGYDSPRQL 61

Query: 115 GMRLCDVSDILHIDPNNH--IGDLLKR-QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSR 171
              + D++  ++ DP +   +  +L++       +  L    G   +V  +++   I  +
Sbjct: 62  MDSVTDIATQIYADPADRDKLKSMLEQYGQVTNFECRLRHRSGRIFWVSENISV--IKDK 119

Query: 172 NREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP- 230
           +   + ++GF                 + +++FS   +  +                   
Sbjct: 120 DGNITAYQGFN--QAITERKQTELALHKSEERFSLAMQATRDGLWDWDVTTGEVYFSPGY 177

Query: 231 ------PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYT 284
                        +  + L   +    +         + +   S   +      N +   
Sbjct: 178 ARMLGYDSTEVPPHVQTWLDLIHPEDKEKAYQANLDCINNLVDSFEVEFRMQAKNRDWVW 237

Query: 285 KKQYFGTLQ-NNSKESFEYLSHRNHPSLSAYFDEGENLTPE----TVDKCPIPFFVYS-H 338
                  ++ + S ++   +      +     +E    + +     ++KCP    +    
Sbjct: 238 ILGRGSAVRRDESGKALRMIGTHTDITNRKQAEEARIASEQKFKNLIEKCPASVMLLDHQ 297

Query: 339 GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398
           G + + N   +      + + +     L   +       N  +   +        +    
Sbjct: 298 GRVEFVNDWHIEKF---ANNKLGKEYFLGRSIHELPGLVNAGVDTEISRVFQGDDVELEN 354

Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458
                     +   +         Q         +       +  +  ++    +  S++
Sbjct: 355 VYFPEFAVGGSG-WVNIRAVPVY-QGGRVAGGVLLRENITARKKMETALQQSQQKFRSLV 412

Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
           E T D I     EG     +  VS L GY V+++L K F   +      V+   L   L 
Sbjct: 413 ENTQDVIYSHTPEGHFTYLSPQVSDLLGYEVQELLGKNFQDLVHPQDLPVVQRGLDNALK 472

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHA 574
            D     E       K+       + +     S            DI+E KQ +  L  +
Sbjct: 473 TDQNHG-EVEYRLLHKDGHYRWFHVRVSFQRNSEGEIESVLGVARDITERKQAEELLRES 531

Query: 575 KKIAEKESS 583
           ++     ++
Sbjct: 532 EERTRHLNA 540



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 21/133 (15%), Positives = 38/133 (28%), Gaps = 6/133 (4%)

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL-EQNTPSVMNHYLTE 515
           IL      I     +G  LS N  ++++ GY     L    T    +          L  
Sbjct: 25  ILMNAPVCIFTTTPDGRYLSVNNTLARMHGYDSPRQLMDSVTDIATQIYADPADRDKLKS 84

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKL 571
           +L     Q          +  ++  +   I  +         Y      I+E KQ +  L
Sbjct: 85  MLEQ-YGQVTNFECRLRHRSGRIFWVSENISVIKDKDGNITAYQGFNQAITERKQTELAL 143

Query: 572 SHAKKIAEKESSH 584
             +++        
Sbjct: 144 HKSEERFSLAMQA 156



 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 8/146 (5%), Positives = 38/146 (26%), Gaps = 7/146 (4%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVS--DILHIDPNNHIGDLLKRQNTWYGKTT 148
                  +++   +  G    ++ G  + ++   ++ +      +      +     + +
Sbjct: 729 PDYRYIIVNDAYQREFGKPREEIEGHTVEELVGKEVFYSKIKPRLDTAFAGEEVVS-EDS 787

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
              ++G   Y    +   P Y ++   +G                    +  ++    ++
Sbjct: 788 FPGLDGVLKYK--VMNYYPFYEKDGSVAGV--VATGKDFTEQKKAEDALRESEELLRTVN 843

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHL 234
           E       ++               +
Sbjct: 844 ETVGEGIVLKDASDRFVHWNKTASDI 869


>gi|89109037|ref|AP_002817.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli str. K-12 substr. W3110]
 gi|1736873|dbj|BAA16014.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli str. K12 substr. W3110]
          Length = 807

 Score =  304 bits (779), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 99/495 (20%), Positives = 186/495 (37%), Gaps = 41/495 (8%)

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
             P+   +             + LT  +S    +                    + ++L 
Sbjct: 223 TLPMGVTILDENGHT-----LISLTGPESKIKGDPRWMQERSWFGY----TEGFRELVLK 273

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV---DTRINK 444
           ++      +      +    E    +              +       E         + 
Sbjct: 274 KNLPPSSLSIVYSVPVDKVLERIRMLILNAILLNVLAGAALFTLARMYERRIFIPAESDA 333

Query: 445 RKMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            ++E        I+ +   GI I+   +G+ + +N            +  ++        
Sbjct: 334 LRLEEHEQFNRKIVASAPVGICILRTADGVNILSNELAHTYLNMLTHEDRQR-------- 385

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                    LT+I+       ++      T     L +  +  +    +     + D+S 
Sbjct: 386 ---------LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSS 432

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + +  L    + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R 
Sbjct: 433 RVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR- 490

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
                 ++ S +L+L I++D+LD SKIES ++ +     S  E ++   +        K+
Sbjct: 491 --LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQ 548

Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           + +      ++P  +  D   ++Q+  N+LSNAI FT +G  I++       + + +RVR
Sbjct: 549 LGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG-CIVLHVR-ADGDYLSIRVR 606

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTGVG+   E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+
Sbjct: 607 DTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGS 666

Query: 803 LIEIIFPLYDTSHPH 817
              +  PLY   +P 
Sbjct: 667 QFTVRIPLYGAQYPQ 681


>gi|292488814|ref|YP_003531701.1| Two component sensor kinase/response regulator protein RcsC
           [Erwinia amylovora CFBP1430]
 gi|291554248|emb|CBA21540.1| Two component sensor kinase/response regulator protein RcsC
           [Erwinia amylovora CFBP1430]
          Length = 987

 Score =  304 bits (779), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 96/378 (25%), Positives = 172/378 (45%), Gaps = 29/378 (7%)

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKP 496
           +    N  ++E +      I+ +   GI I+   +G  + +N                  
Sbjct: 376 LPAEENAYRLEEQEQFNRKIVASAPVGICILRTSDGTNILSNELA-------------HN 422

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556
           +   L Q         LTE++       ++      T     L +  +  +    +    
Sbjct: 423 YLTLLTQEDRL----RLTEMICGQQVNFVD----VLTGSNTNLQISFVHSRYRNENVAIC 474

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            + D+S   + +  L    + AE+ S  KS FLA VSHE+RTPL  IIG  +++K +   
Sbjct: 475 VLVDVSARVKMEQSLHEIAQEAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLKTKALP 534

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
              +         ++ S +L+L I++D+LD SKIES ++ +     S  E ++   +   
Sbjct: 535 AGADS----LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVIAHITANYL 590

Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
             A +KR+ +     +++P +L  D   ++Q+  N+L+NAI FT +GG  II   +   +
Sbjct: 591 AMAVKKRLTLWCFIDSDVPVLLEGDPMRLQQVISNLLNNAIKFTHTGG--IILQAYVKGD 648

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            +  RVRD+GVG+   E+ +   PF Q+ +  Q   +GTGLGL + + +++   G   + 
Sbjct: 649 YLAFRVRDSGVGIPAKEITRLFDPFFQVGSGVQRHFQGTGLGLAICEKLMNMMDGDIEVE 708

Query: 796 STPAKGTLIEIIFPLYDT 813
           S P  G+   I  PLY++
Sbjct: 709 SEPGMGSQFIIRIPLYNS 726


>gi|322421028|ref|YP_004200251.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
 gi|320127415|gb|ADW14975.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
          Length = 852

 Score =  304 bits (779), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 93/566 (16%), Positives = 176/566 (31%), Gaps = 47/566 (8%)

Query: 272 QEDFHTINLNQYTKKQYFGTLQNNSKESFEYL----SHRNHPSLSAYFDEGENLTPETVD 327
           +         +     +   L +++      L             A  ++  +     +D
Sbjct: 179 ENPILARGGEERMIAFHNTLLHDDAGAISGVLFSGEDITERKKAEASLEKAASEWRAAMD 238

Query: 328 KCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
                 ++      L  AN +F  L   +  + I        L               M 
Sbjct: 239 ASADAIYLLDPQRRLMRANKAFYRLVGREPAECI-GKHVAEILHPGYH-------GACMQ 290

Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
            R++         L          L +        +   E +       +    R  ++ 
Sbjct: 291 CRAEEAQRDQVVVLEAGDPENYLGLPVEVTLSVVRDASGEPVSMLVTRHDLSQDRKTRQT 350

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP-VEDILRKPFTVFLEQNT 505
           +E    +   ++E + D I  I  EG I+  N A  ++ G    E IL +    F+  ++
Sbjct: 351 LEESEERYRQLVELSQD-IIFIRSEGEIVFINDAGMRMLGADAPEQILSREMLDFVHPDS 409

Query: 506 PSVMNHYLT-EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564
             ++   L      +     +E   L    +                      + DI+  
Sbjct: 410 KGLVIEQLQWAAHEVGRLPVIEANFLTLDGDTFCGEATATSIMHHGKPAVHFFVRDITNR 469

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           K  + +L H++K+              V+H+    LT I G+  +++        +    
Sbjct: 470 KNLEGQLRHSQKL-----EAVGHLAGGVAHDFNNILTVIGGYGALLE---MKMTADDPGR 521

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           E    I  + +   ++   LL  S+    K  +H    SL+E +      ++     + I
Sbjct: 522 EMVEQILAATDRAANLTRSLLAFSR----KHEMHPAHCSLNEIIQSVAKFLK-RIIGEDI 576

Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH------------- 731
                 A     + AD   ++Q+ +N+ +NA     +GG   I T               
Sbjct: 577 AFEMHLAPLPLTVYADKGQMEQVIINLATNARDAMKNGGVFSIRTETVAMDYRFLEAHGF 636

Query: 732 -TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
            T  +  ++ V D G GM         +PF    +     G+GTGLGL +   +V  + G
Sbjct: 637 GTPGDYALISVSDNGQGMDEATRSMIFEPFFTTKD----VGKGTGLGLSIVYGIVQQHKG 692

Query: 791 KFYIFSTPAKGTLIEIIFPLYDTSHP 816
              + S    GT   I  PL     P
Sbjct: 693 FIEVESEAGGGTSFRIYLPLSGEHAP 718



 Score =  105 bits (263), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 35/300 (11%), Positives = 94/300 (31%), Gaps = 12/300 (4%)

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTK 353
           +++   +  + R     +    +  N     +D   + F  +   G +   N     +  
Sbjct: 77  DAQHESDEQASRRLELAARAGLQERNKAQLYLDIAGVMFAAIDRTGTIILINKKGCQILG 136

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
           Y   + +        L      +    +K V   +      +     + I         +
Sbjct: 137 YGENELLGRNWFEVCL----PPTAVAIVKEVFAKQMAGEIESVEFFENPILARGGEERMI 192

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
            F      +             +  + +  +  +E    +  + ++A++D I +++ +  
Sbjct: 193 AFHNTLLHDDAGAISGVLFSGEDITERKKAEASLEKAASEWRAAMDASADAIYLLDPQRR 252

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
           ++  N+A  +L G    + + K     L             E    D    LE    G  
Sbjct: 253 LMRANKAFYRLVGREPAECIGKHVAEILHPGYHGACMQCRAEEAQRDQVVVLEA---GDP 309

Query: 534 KEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
           +    L + + +  +  +S       +T HD+S+ ++ +  L  +++   +      D +
Sbjct: 310 ENYLGLPVEVTLSVVRDASGEPVSMLVTRHDLSQDRKTRQTLEESEERYRQLVELSQDII 369



 Score = 98.9 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 33/379 (8%), Positives = 92/379 (24%), Gaps = 21/379 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP--NNHIGDLLKRQ-NTWYG 145
           ID  G +  I+++  + +G    +++G    +V                 +  +  +   
Sbjct: 118 IDRTGTIILINKKGCQILGYGENELLGRNWFEVCLPPTAVAIVKEVFAKQMAGEIESVEF 177

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
                   G    + I      ++      SG    G            A  ++   ++ 
Sbjct: 178 FENPILARGGEERM-IAFHNTLLHDDAGAISGVLFSG--EDITERKKAEASLEKAASEWR 234

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
              +       +   +  +                  +        H        +    
Sbjct: 235 AAMDASADAIYLLDPQRRLMRANKAFYRLVGREPAECIGKHVAEILHPGYHGACMQCRAE 294

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR----NHPSLSAYFDEG 318
            ++   +   E     N      +     +++ S E    L  R             +E 
Sbjct: 295 EAQRDQVVVLEAGDPENYLGLPVEVTLSVVRDASGEPVSMLVTRHDLSQDRKTRQTLEES 354

Query: 319 ENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
           E    + V+      F+ S G + + N + + +    + + I     L      P     
Sbjct: 355 EERYRQLVELSQDIIFIRSEGEIVFINDAGMRMLGADAPEQILSREMLD--FVHPDSKGL 412

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
              +               A    +  + +             +  P     +    +  
Sbjct: 413 VIEQLQWAAHEVGRLPVIEANF--LTLDGDTFCGEATATSIMHHGKP---AVHFFVRDIT 467

Query: 439 DTRINKRKMEIEVMQLCSI 457
           + +  + ++     +L ++
Sbjct: 468 NRKNLEGQLRHS-QKLEAV 485



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 35/313 (11%), Positives = 94/313 (30%), Gaps = 14/313 (4%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + +D    L   ++   + +G    + IG  + ++    +   +       + +     
Sbjct: 244 IYLLDPQRRLMRANKAFYRLVGREPAECIGKHVAEILHPGY---HGACMQ-CRAEEAQRD 299

Query: 146 KTTLWPIEGTN--LYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
           +  +         L +P+++    +   + E          H    D   R   +  +++
Sbjct: 300 QVVVLEAGDPENYLGLPVEVTLSVVRDASGEPVSM--LVTRHDLSQDRKTRQTLEESEER 357

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSP--PPHLRMKNKVSS--LTEYYAHKDDVLKTEKY 259
           +  L E+ +    +  E   +F   +           ++ S  + ++       L  E+ 
Sbjct: 358 YRQLVELSQDIIFIRSEGEIVFINDAGMRMLGADAPEQILSREMLDFVHPDSKGLVIEQL 417

Query: 260 PLLTSEESSLPEQED-FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
                E   LP  E  F T++ + +  +    ++ ++ K +  +         +      
Sbjct: 418 QWAAHEVGRLPVIEANFLTLDGDTFCGEATATSIMHHGKPAVHFFVRDITNRKNLEGQLR 477

Query: 319 ENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
            +   E V         +   N+      +  L + K   D      +  +L A   + N
Sbjct: 478 HSQKLEAVGHLAGGVA-HDFNNILTVIGGYGALLEMKMTADDPGREMVEQILAATDRAAN 536

Query: 379 NAIKPVMLYRSDR 391
                +   R   
Sbjct: 537 LTRSLLAFSRKHE 549


>gi|187933989|ref|YP_001885394.1| two-component sensor histidine kinase [Clostridium botulinum B str.
           Eklund 17B]
 gi|187722142|gb|ACD23363.1| sensor histidine kinase [Clostridium botulinum B str. Eklund 17B]
          Length = 562

 Score =  304 bits (779), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 74/363 (20%), Positives = 159/363 (43%), Gaps = 32/363 (8%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           ++  +  ++ SIL +   G+  ++   I+++ N    ++FG     +         + + 
Sbjct: 229 EIVDKQTRIESILRSMESGVIAVDNNNIVIAINPYAERIFGIKKNILGESIIEYVSDYDI 288

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
            + +         + +   +E+                 I          +T+ DI++ K
Sbjct: 289 NTFLEEDYEIDKEIKILHPIERDLKIKKSN---------IINGIEMIGKVITIQDITDIK 339

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + +                ++ F+A VSHE++TPLT+I GF+E ++        N    +
Sbjct: 340 KLE--------------LMRTQFVANVSHELKTPLTSIKGFAETLR----YVEDNETREK 381

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           + N ID+    +  ++ND+L +S IES  ++   +       + + I++V+  AN K I 
Sbjct: 382 FLNIIDKESERLSRLINDILVLSSIESN-ISTQNDEFLPKSIIEDVINMVRKLANNKAIN 440

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +   + +N   IL D     Q+ LN++ NAI ++ +G  + +  +++      L + D G
Sbjct: 441 LEF-YDDNQELILGDKDKFYQLTLNLVENAIKYSENGSNVKV-ISYSKQGNYYLEISDNG 498

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+   +L +  + F ++  S   +  GTGLGL + K +V    G   + S   +G++ +
Sbjct: 499 LGIPKEDLPRIFERFYRVDKS--RKKGGTGLGLAIVKHIVKTFNGDINVKSILGEGSIFK 556

Query: 806 IIF 808
           +  
Sbjct: 557 VRI 559


>gi|78778120|ref|YP_394435.1| PAS/PAC sensor signal transduction histidine kinase [Sulfurimonas
           denitrificans DSM 1251]
 gi|78498660|gb|ABB45200.1| PAS/PAC sensor signal transduction histidine kinase [Sulfurimonas
           denitrificans DSM 1251]
          Length = 697

 Score =  304 bits (779), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 102/347 (29%), Positives = 170/347 (48%), Gaps = 16/347 (4%)

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
            +++G+I   N    K+ GY  ++++ K   +    +T   +   L   +          
Sbjct: 360 TDKKGVITYANDEFCKISGYSRDELIGKSHNIIRHPDTEMAIFKELWHTIRDKKEPWFG- 418

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
                 K++     + +I  +  S+     Y     DI+E +            A     
Sbjct: 419 EIKNLKKDKSSYWTKAVINPILDSNQNIIEYIGIRTDITELENA-------MIAALSAEK 471

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
            KS FLA +SHE+RTPL A+IGFS+++  +   P    +   +   I+ SG  +L++VN+
Sbjct: 472 AKSTFLATMSHELRTPLNAVIGFSQILMAKDDMP--KEKIRTFVEKINISGKHLLNLVNN 529

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703
           +LD SKIESG+MNL+   + L+  ++E I LV+  A +K I I       I  + AD + 
Sbjct: 530 ILDFSKIESGRMNLNKREILLENFINETILLVENEALKKDIEIIKKGFFEI-SLSADEQL 588

Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
           +KQ+ LNILSNAI F+     I IS  +     + + + D GVG++  +LEK  KPF Q+
Sbjct: 589 LKQVILNILSNAIKFSNQNSAINISYKNDEENHI-ISICDEGVGLSQEQLEKLFKPFSQV 647

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
              Q    +GTGLGL +++ +V+ + G   + +   KG+   I  P+
Sbjct: 648 QEHQNTALKGTGLGLVISQKIVELHNGNIEVKTQSGKGSCFYISIPI 694



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/135 (14%), Positives = 38/135 (28%), Gaps = 12/135 (8%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL-----KRQNT 142
             D  G +   ++E  K  G    ++IG     +      D    I   L      ++  
Sbjct: 359 KTDKKGVITYANDEFCKISGYSRDELIGKSHNIIRHP---DTEMAIFKELWHTIRDKKEP 415

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
           W+G+      + ++ +    +   PI   N+    +   GI        +        +K
Sbjct: 416 WFGEIKNLKKDKSSYWTKAVIN--PILDSNQNIIEY--IGIRTDITELENAMIAALSAEK 471

Query: 203 KFSHLHEIKKGHSSV 217
             S            
Sbjct: 472 AKSTFLATMSHELRT 486


>gi|95930779|ref|ZP_01313511.1| histidine kinase [Desulfuromonas acetoxidans DSM 684]
 gi|95133127|gb|EAT14794.1| histidine kinase [Desulfuromonas acetoxidans DSM 684]
          Length = 385

 Score =  304 bits (779), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 77/368 (20%), Positives = 157/368 (42%), Gaps = 26/368 (7%)

Query: 450 EVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
           E+ +  ++L+   + I ++      +++ N++  KL     +          +E    + 
Sbjct: 40  ELERYMALLDQAKNAICLLEVPSLKVVNANKSARKLLVL--DQYPDSSLLDMIEVPAATA 97

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEK---LLSLRIIIKKLPFSSCYSLTMHDISEWK 565
           +  +L      +    LE       +E     +  L +   +   +        DISE K
Sbjct: 98  IVDWLELAGEGNHYFQLESTLYSYAQESYSSAIYELTLTTVEFKKTRYLVCVAQDISERK 157

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           +                  K + ++ VSHE+ TPLTA++GF E +           +  E
Sbjct: 158 KL--------------DQMKDEMISAVSHEMSTPLTAMLGFCEFMLENEVPA---EQQQE 200

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           +   I +    +  ++++LL + ++ +G   ++F  ++L    +E   L   Y+      
Sbjct: 201 FLQIIFKESQRLKGLIDNLLSLQRMRAGMGCVNFTWLNLSMLFAELCQLFGKYSATH--T 258

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           I+     + P + AD   ++Q   N++SNAI ++P+GG + + T    + +VI+ V+D G
Sbjct: 259 IKVDCPTDFPLVSADQLCLQQAMENLISNAIKYSPNGGTVTV-TARQDDGQVIVSVKDEG 317

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G++    E+    F +I      +  GTGLGLPL K ++  + G+ ++ S   +G+   
Sbjct: 318 MGISPVVQEQIFDRFFRIDTKNGQKVGGTGLGLPLVKEIISLHHGEVWVESEEGQGSTFC 377

Query: 806 IIFPLYDT 813
              PL   
Sbjct: 378 FSLPLERE 385


>gi|328952707|ref|YP_004370041.1| PAS/PAC sensor signal transduction histidine kinase [Desulfobacca
           acetoxidans DSM 11109]
 gi|328453031|gb|AEB08860.1| PAS/PAC sensor signal transduction histidine kinase [Desulfobacca
           acetoxidans DSM 11109]
          Length = 759

 Score =  304 bits (779), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 100/634 (15%), Positives = 210/634 (33%), Gaps = 47/634 (7%)

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
           L +I  G SS+ +      +   P      +  V  +     +   + +     L  + +
Sbjct: 144 LQQITGGLSSLRRISILGVADPDPEAPGIQEAAVLGIPTVRDYPTLLAQEPDLVLELTGD 203

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
             + +          Q                  E    R             N   +  
Sbjct: 204 PEVRKSIIQKKSAQTQVIDHIQSRLFWEL--FQKEEDRLRLRVESEIKLANQRNQFQKIF 261

Query: 327 DKCPIPFFVYSHGNLFY-ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
           D  P    V +   L    N +FL   +  + + +        +L       +       
Sbjct: 262 DYLPDSVLVLNQDYLVEEVNQTFLTNFQKNAEEVVGE--HCYKVLHQLSEPCDRHGMVCP 319

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
           L +  + C  A   L     +                          +  +    +  + 
Sbjct: 320 LPQVLQECKPAQV-LQYYTDSDGVEHYYEITISPLCPPEIAGRRVIEVIKDITTRQQLEE 378

Query: 446 KMEIEVMQ--------------LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
            ++    Q              L +I+ +  D + +I  +  ++  NRA+ K+ G    D
Sbjct: 379 ALKKSEEQTRQLFKQAAKEKAFLETIVNSIEDHMMVIEPDYRVVEVNRALLKMVGLRRRD 438

Query: 492 ILRKPF----TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
            + K          +  +   +   L + + L    +     +   K+ +   + ++   
Sbjct: 439 TVGKYCYEISHHLDKPCSGPDLPCPLRDAVVLGKACSGTH--VHFDKDGREHYMHVVCHP 496

Query: 548 LPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
           L   +           D+++    + ++ H  K+            A V HEI  P+T I
Sbjct: 497 LFDEAGKVTLVINVARDVTKEIASRARMLHDDKMT-----SLGKLSASVVHEINNPMTGI 551

Query: 604 IGFSEVIKN----QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           +   ++++            + +  EY + I    + V   V++LL  S+    K +  F
Sbjct: 552 MNLVKLMQRIMGKGLLSETESAKMHEYLDLIYGETSRVSKTVSNLLAFSR----KTSPEF 607

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719
           +PV L+  ++E ++L +     + I +   F  ++  +LAD   +KQ+ LN++ NA    
Sbjct: 608 KPVGLNALLTETLTLTEYQLRLQGITVNCQFDPDLMPVLADPEQMKQVFLNLILNARDAM 667

Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
           P GG + + T +     V++++ DTG+G+   +     +PF     +      G GLGL 
Sbjct: 668 PDGGVLTLKTKNYRRPGVMVQIADTGIGIPKEKYSSIFEPFYTTKKAGS----GAGLGLS 723

Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
           +   ++  + G   + S   +GT   I  P Y  
Sbjct: 724 VVYGIIQEHKGTIKVDSIVGQGTTFTIRLPAYKQ 757



 Score = 45.4 bits (106), Expect = 0.037,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 42/132 (31%), Gaps = 10/132 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH-----IDPNNHIGDLLKRQNTW 143
           I+    + E++  L K +G      +G    ++S  L       D    + D +      
Sbjct: 415 IEPDYRVVEVNRALLKMVGLRRRDTVGKYCYEISHHLDKPCSGPDLPCPLRDAVVLGKAC 474

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
            G    +  +G   Y+ +     P++    + +      +      +   RA     D K
Sbjct: 475 SGTHVHFDKDGREHYMHVV--CHPLFDEAGKVTLV--INVARDVTKEIASRARMLH-DDK 529

Query: 204 FSHLHEIKKGHS 215
            + L ++     
Sbjct: 530 MTSLGKLSASVV 541


>gi|325273993|ref|ZP_08140152.1| multi-sensor signal transduction histidine kinase [Pseudomonas sp.
           TJI-51]
 gi|324100882|gb|EGB98569.1| multi-sensor signal transduction histidine kinase [Pseudomonas sp.
           TJI-51]
          Length = 593

 Score =  304 bits (779), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 109/581 (18%), Positives = 208/581 (35%), Gaps = 29/581 (4%)

Query: 234 LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293
             M+ ++   T +       L+      L          E+  ++  N  +         
Sbjct: 38  ATMQQQLVRDTTHSLEVGLKLRQNLGEQLNLILDDDTAPENLRSLQDNFQSLLAKGLEQG 97

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTK 353
                  +  S+      +         +          F       +     +  L+T+
Sbjct: 98  GERTGFSKANSNYQAFLQAYRDSPAPARSMGVDQPLGAAFNQVRTDLIDSHRQALDLITR 157

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
            +     + A  +S +L    L             + R      A         + +  +
Sbjct: 158 SEERSR-DRALLVSGVLGLMGLVVLVLGFISAHNIARRFGQPIEALATAADQLGKGNFDV 216

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINK--RKMEIEVMQLCSILEATSDGIAIINRE 471
           T  P  +A +  +   + G+  + +         ++     +L ++L++  DG+ II+R+
Sbjct: 217 TL-PVTQAAELNQLTRRFGLMADALRKHQATNVDELLAGQQRLQAVLDSIDDGLLIIDRQ 275

Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
           G +   N    +  G+    +                +   L           L      
Sbjct: 276 GRLEHLNPVAQRQLGWNDSRVGSSLAEALQRPELEQQLRQVLRGGSLDRPPDDLNMEV-- 333

Query: 532 STKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
             +E +LL+  +     P        + +HD++E +  +                +S+F+
Sbjct: 334 -DEESRLLTYSLTPVSHPQGPILGAVMVLHDVTEQRAFE--------------RVRSEFV 378

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
            R SHE+RTP+T  +  +  +  +R       R  +    I      +  ++NDLL+ S+
Sbjct: 379 LRASHELRTPVTG-MHMAFGLLRERVKFPPEARENDLLETIGEEMQRLTQLINDLLNFSR 437

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709
            +SG   L   P ++DE V  A   V   A  K+I + +     +PRI AD   + ++  
Sbjct: 438 YQSGLQKLELAPCAIDELVERAQLRVADQAAHKQIELVSDLEQPLPRIQADPAQLDRVLD 497

Query: 710 NILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
           N+L NAI  TP GG+I +       E VI+ V D G G+   +  +  +PF Q+      
Sbjct: 498 NLLHNAIRHTPKGGRIRLH-ARRHAERVIISVEDNGEGIAYGQQGRIFEPFVQV----GR 552

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           +  G GLGL L K +V  + G+  +FS P +GT   +  P+
Sbjct: 553 KKGGAGLGLALCKEIVQLHGGRMGVFSRPGQGTQFYMALPV 593



 Score = 44.6 bits (104), Expect = 0.070,   Method: Composition-based stats.
 Identities = 21/241 (8%), Positives = 64/241 (26%), Gaps = 9/241 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G L+ ++    + +G    ++ G  L +      ++        + R  +      
Sbjct: 272 IDRQGRLEHLNPVAQRQLGWNDSRV-GSSLAEALQRPELEQQ---LRQVLRGGSLDRPPD 327

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
              +E       +  +  P+        G     ++H          +  R +      H
Sbjct: 328 DLNMEVDEESRLLTYSLTPVSHPQGPILGA--VMVLHDVTEQRAFERV--RSEFVLRASH 383

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           E+ +   +     + +  ++   P    +N +         +   L  +       +   
Sbjct: 384 EL-RTPVTGMHMAFGLLRERVKFPPEARENDLLETIGEEMQRLTQLINDLLNFSRYQSGL 442

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
              +     I+      +        + +        +  P + A   + + +    +  
Sbjct: 443 QKLELAPCAIDELVERAQLRVADQAAHKQIELVSDLEQPLPRIQADPAQLDRVLDNLLHN 502

Query: 329 C 329
            
Sbjct: 503 A 503


>gi|269966421|ref|ZP_06180506.1| sensor protein LuxQ [Vibrio alginolyticus 40B]
 gi|269829008|gb|EEZ83257.1| sensor protein LuxQ [Vibrio alginolyticus 40B]
          Length = 858

 Score =  304 bits (779), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 84/376 (22%), Positives = 164/376 (43%), Gaps = 23/376 (6%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            ++E +      +       I + +  G+++  N A  K      +     P     ++ 
Sbjct: 350 EELEAQKRSFRDLFNFALSPIMVWSESGVLVQINPAARKELVMENDVETMHPVFKGFKEK 409

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISE 563
               +           +   +          +K+    +   ++    S   +   DI+ 
Sbjct: 410 LMPHLRMAAQGATLTGVNVPI---------GDKVYRWNLSPIRVDGDISGIIVQGQDITT 460

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + + + + A+K AEK +  ++DFLA++SHEIRTP+  I+G ++++K+     +     
Sbjct: 461 LIEAEKQSNLARKEAEKSAQARADFLAKMSHEIRTPINGILGVAQLLKD----SVETEEQ 516

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
               + +  SG  +L ++ND+LD SKIE GK N+   P S  + +    ++ +     K 
Sbjct: 517 NNQIDVLRHSGEHLLAVLNDILDFSKIEQGKFNIQKHPFSFTDTIRTLENIYRPICESKG 576

Query: 684 ILIRTS--FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-----SNEE 736
           + +        N+  I  D   + QI  N++SN++ FTPSG  + +           N  
Sbjct: 577 VNLVIENKIDPNV-EIFTDQVRLNQILFNLVSNSVKFTPSGS-VRLHAELEQFYGADNSV 634

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           +++ + DTG+G+ + +L++  +PF Q   +      G+GLGL + K++VD   G   + S
Sbjct: 635 LVVEITDTGIGIESDKLDQMFEPFVQEEATTTREYGGSGLGLTIVKSLVDMLEGDVQVRS 694

Query: 797 TPAKGTLIEIIFPLYD 812
               GT   I  P+ D
Sbjct: 695 QKGLGTTFVITMPVKD 710


>gi|300936769|ref|ZP_07151662.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 21-1]
 gi|300458099|gb|EFK21592.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 21-1]
          Length = 933

 Score =  304 bits (779), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 99/495 (20%), Positives = 185/495 (37%), Gaps = 41/495 (8%)

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
             P+   +             + LT  +S    +                    + ++L 
Sbjct: 223 TLPMGVTILDENGHT-----LISLTGPESKIKGDPRWMQERSWFGY----TEGFRELVLK 273

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV---DTRINK 444
           ++      +      +    E    +              +       E         + 
Sbjct: 274 KNLPPSSLSIVYSVPVDKVLERIRMLILNAILLNVLAGAALFTLARMYERRIFIPAESDA 333

Query: 445 RKMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            ++E        I+ +   GI I+   +G+ + +N            +  ++        
Sbjct: 334 LRLEEHEQFNRKIVASAPVGICILRTADGVNILSNELAHTYLNMLTHEDRQR-------- 385

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                    LT+I+       ++      T     L +  +  +    +     + D+S 
Sbjct: 386 ---------LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSS 432

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + +  L    + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R 
Sbjct: 433 RVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR- 490

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
                 ++ S +L+L I++D+LD SKIES ++ +     S  E ++   +        K+
Sbjct: 491 --LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQ 548

Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           + +      ++P  +  D   ++Q+  N+LSNAI FT +G   I+       + + +RVR
Sbjct: 549 LGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGC--IVLQVRADGDYLSIRVR 606

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTGVG+   E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+
Sbjct: 607 DTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGIGS 666

Query: 803 LIEIIFPLYDTSHPH 817
              +  PLY   +P 
Sbjct: 667 QFTVRIPLYGAQYPQ 681


>gi|239905634|ref|YP_002952373.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239795498|dbj|BAH74487.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 768

 Score =  304 bits (779), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 90/378 (23%), Positives = 164/378 (43%), Gaps = 17/378 (4%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
           +        +  S+ E++  G  ++++ G     N A SK+F  P E          ++ 
Sbjct: 260 EATSRENEARFRSLYESSPLGTLLLDKNGTATDCNLAFSKIFDSPRETYRGINLYEAVKD 319

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
               +    + E+++              + +   + +          + + + + DI+ 
Sbjct: 320 ---KLFLDAVEELINTGETHAEGSYESFFSHKNIFIRVH---GVKAHDNLFMVIVEDITA 373

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            K  + +L  AK+ A   S  KS+FLA +SHEIRTPL  I+G  +++++       +   
Sbjct: 374 EKISELELIAAKEQALAASKSKSEFLANMSHEIRTPLNGIMGMLQLLESTD----TDSEQ 429

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            EY +    SG  +  ++ D+LD+S+IE G + L     +L+  V + I+        K 
Sbjct: 430 TEYIDIALNSGRNLTSLITDILDLSRIEQGYVALENHGFNLNHLVEDVINTFITELTSKN 489

Query: 684 ILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVIL 739
           + I+TS   +IP  +  D   ++QI  NI  N++ FT  G     I  S  + +   + +
Sbjct: 490 LEIKTSIDKSIPDLVYGDSGRLRQIIFNIFGNSVKFTSRGCISLTIT-SLINNNIINIFI 548

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            + DTG+G+   +L++   PF Q+  S   +  G GLGL + K ++    G   I +   
Sbjct: 549 EISDTGIGIPEDKLDEIFVPFTQVDGSLTRKYGGVGLGLSIVKKLLLIMGGSITIDNNDD 608

Query: 800 KG-TLIEIIFPLYDTSHP 816
            G T   I  P   T  P
Sbjct: 609 GGITT-CIAIPFKTTEPP 625


>gi|159026945|emb|CAO89196.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 665

 Score =  304 bits (779), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 86/428 (20%), Positives = 180/428 (42%), Gaps = 52/428 (12%)

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINK--RKMEIEVMQLCSILEATSDGIAIINREGI 473
           I      +  E +       E ++    +   +M  E  +L +++   +DG  +++    
Sbjct: 238 IDLPLGGELGELILSFNEMAEKLERYDEQNIEEMTAEKAKLDTLMSTIADGAILLDTNFQ 297

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE------- 526
           +L  N A  ++FG+  ++I+ K             +   L +I + +  Q  E       
Sbjct: 298 LLLINPAAREIFGWEDQEIIGKNVLHLFPSELTVKLTKPLYQIAAGETLQPEESANQNHH 357

Query: 527 ---------------KITLGSTKEEKLLSLRIIIKKLPFS-----SCYSLTMHDISEWKQ 566
                               S    K  ++RI++ ++           ++T+ DI+    
Sbjct: 358 PKNAVIDQENNNYSPAEFRLSLTNPKPCTIRILLTQVFDQYRENVRGIAMTLQDITR--- 414

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
                        + +  KS F++ VSHE+RTPL  I  F E +  +    L +    E+
Sbjct: 415 -----------ETELNEAKSQFISNVSHELRTPLFNIKSFIETL-TEFGEDLSDTEKREF 462

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
               +   + +  +VND+LD+S++ES + N + + + + + + + +   QL A +K + +
Sbjct: 463 LETANHETDRLTRLVNDVLDLSRLESSR-NYNLDALDIGQLIEQTLRTYQLNARDKGLEL 521

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE------EVILR 740
            +    N+  IL     + Q+  N++ N++ FTP+GG+++I     S +      ++ + 
Sbjct: 522 SSDIEANLLPILGHYDLLLQVLTNLVGNSLKFTPAGGKVVIRAYKISKDNPQETLKIRVE 581

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V DTG+G+   +       F ++ N +    EGTGLGL + K +++ +  + ++ S    
Sbjct: 582 VSDTGIGIDAEDQIAIFDRFYRVEN-RVHTLEGTGLGLSIVKNIIEKHYSQIHLISEVGI 640

Query: 801 GTLIEIIF 808
           GT      
Sbjct: 641 GTTFWFDL 648


>gi|157151584|ref|YP_001450079.1| histidine kinase [Streptococcus gordonii str. Challis substr. CH1]
 gi|262282636|ref|ZP_06060404.1| histidine kinase [Streptococcus sp. 2_1_36FAA]
 gi|157076378|gb|ABV11061.1| histidine kinase [Streptococcus gordonii str. Challis substr. CH1]
 gi|262261927|gb|EEY80625.1| histidine kinase [Streptococcus sp. 2_1_36FAA]
          Length = 453

 Score =  304 bits (779), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 92/403 (22%), Positives = 173/403 (42%), Gaps = 34/403 (8%)

Query: 415 FIPFEKANQFPENMPQNGIEPEDVD-TRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
           +         PE         +  + TR+ +  +E E  +L SIL   +DG+   NR G 
Sbjct: 56  YSEVLDMQGSPEITDMTNSINDLSEVTRLTQENLEQETKRLTSILSYMTDGVLATNRRGQ 115

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
           I+  N   SK  G   E++        L+      +   +T++  L +    E       
Sbjct: 116 IIMINDMASKQLGVDPEEVQNTSILDLLDIADEYDLRDLITKMPELTIDSQDE------- 168

Query: 534 KEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
              + LSLR+    +   S +       +HD +E ++E+ +                 F+
Sbjct: 169 -NGEYLSLRVRFALVRRESGFISGLVAVLHDTTEQEKEERERRL--------------FV 213

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
           + VSHE+RTPLT++  + E +     G L  P   E+        N ++ +V+DLL +S+
Sbjct: 214 SNVSHELRTPLTSVKSYLEAL---DEGALSEPVAPEFVKVSLTETNRMMRMVSDLLSLSR 270

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLV---QLYANEKRILIRTSFANNIPRILADLRSVKQ 706
           I++   +L  E  +    ++  ++     +     K+  I   +      +  D   + Q
Sbjct: 271 IDNDSSHLDVELTNFTAFITFILNRFDKIKSQDETKKYEIVRDYPITPIWVEIDTDKMTQ 330

Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
           +  NI++NAI ++P GG+I +    T + ++I+ + D G+G+   +L K    F ++  +
Sbjct: 331 VIDNIMNNAIKYSPDGGKITVGMKTTED-QLIISISDEGLGIPKKDLPKIFDRFYRVDKA 389

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +     GTGLGL +AK ++  + G  +  S    G+   I+ P
Sbjct: 390 RSRAQGGTGLGLAIAKEIIKQHHGFIWAKSEYEVGSTFTIVLP 432


>gi|327478665|gb|AEA81975.1| two-component sensor [Pseudomonas stutzeri DSM 4166]
          Length = 958

 Score =  304 bits (779), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 96/587 (16%), Positives = 202/587 (34%), Gaps = 29/587 (4%)

Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302
           L    A +  V          +   +  E+      NL     +     ++   +   + 
Sbjct: 113 LDATIAERLQVAAGNVQARRDAGLQAAAERLRGAGGNLLMDRLRALLNAVEQQERRELKA 172

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIE 361
            S     +           +   V    I F+ V+ +  +           + +    ++
Sbjct: 173 ASSAVAQTTERAQRLALIGSLVVVALLLIAFWAVHRNLRIRQQLAGAAQAGEARLGALLQ 232

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                   +D  +   + A                   L     +             + 
Sbjct: 233 AIPDYLYAVDHRQQVSSLAAGTARRAPQPAAIEPLLHDLLQQHEDSGLRQNTWCEVQTRR 292

Query: 422 NQFPENMPQ-----NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476
                 MP        I  +  + + ++  +  + + L  +++   + I + + +G  L 
Sbjct: 293 TFEVRLMPTGLGDHLAIARDISELQRSRDSLHDQQLFLRRVVDTDDNLIFVRDAQGRFLL 352

Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN----HYLTEILSLDLRQTLEKITLGS 532
            N A+S L     +DI ++             +            S    +T E     +
Sbjct: 353 CNTALSALLDVRPQDIEQRHPDEVPSARLLRPLLLGDDELAALASSSGELRTTEVALTDA 412

Query: 533 TKEEKLLSLRIIIKKLPFSS-CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
              E    +     ++   +        D+S  ++ +                K++F++ 
Sbjct: 413 HGTEHWFQVVKRPLRISARTCHVVTVAVDVSLRRRME--------------QMKTEFIST 458

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           VSHE+RTPLTAI G   ++     G L +           ++   ++ ++ND+LDI K+E
Sbjct: 459 VSHELRTPLTAIRGALGMLIGGIAGQLSDE-ARPLLTIAHKNSERLVRLINDILDIEKLE 517

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP--RILADLRSVKQIAL 709
           +G++  +     +   V +A+S +  Y  +  + +    A  +       D     Q+  
Sbjct: 518 AGRLAFNLGRHDVRPLVQQALSDITPYGQDYGVTLEFLDAPELASSEATLDPDRFAQVMA 577

Query: 710 NILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
           N+LSNAI  +P+GG++ +    +  E + + V+D G G+      +  + F Q  +S   
Sbjct: 578 NLLSNAIKHSPAGGRVTVDLRRS-GERLEIGVQDRGPGIPEAFRSRIFERFAQADSSDAR 636

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           +  GTGLGL + +++V    GK      P +GT   +  PL + + P
Sbjct: 637 QRGGTGLGLAITRSLVQQMNGKIGFDCQPDQGTRFWLQLPLEEHAQP 683



 Score = 40.0 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 26/241 (10%), Positives = 55/241 (22%), Gaps = 20/241 (8%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           DA G     +  L   +      +      +V     + P     D L    +  G+   
Sbjct: 345 DAQGRFLLCNTALSALLDVRPQDIEQRHPDEVPSARLLRPLLLGDDELAALASSSGELRT 404

Query: 150 WPIEGTNLY---VPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
             +  T+ +       +   P+    R           HV  V  D              
Sbjct: 405 TEVALTDAHGTEHWFQVVKRPLRISAR---------TCHVVTVAVD--------VSLRRR 447

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
           + ++K    S    +              +   ++      A     +  +    L    
Sbjct: 448 MEQMKTEFISTVSHELRTPLTAIRGALGMLIGGIAGQLSDEARPLLTIAHKNSERLVRLI 507

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
           + + + E      L     +     L   +             +L          +  T+
Sbjct: 508 NDILDIEKLEAGRLAFNLGRHDVRPLVQQALSDITPYGQDYGVTLEFLDAPELASSEATL 567

Query: 327 D 327
           D
Sbjct: 568 D 568


>gi|296878312|ref|ZP_06902320.1| phosphate regulon sensor histidine kinase protein PhoR [Clostridium
           difficile NAP07]
 gi|296430610|gb|EFH16449.1| phosphate regulon sensor histidine kinase protein PhoR [Clostridium
           difficile NAP07]
          Length = 429

 Score =  304 bits (779), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 84/369 (22%), Positives = 172/369 (46%), Gaps = 30/369 (8%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQ 503
            +++ + +QL SIL++ S GI  I+  G IL  N    ++       ++      V +++
Sbjct: 79  EEVQYKHLQLKSILKSISHGILAIDVNGNILLINDEAKEMIKSEPNQLVEGHNINVVIKE 138

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMH 559
                    L +IL   +     +    +TK++ +  +++    L  ++       + + 
Sbjct: 139 E------EILKQILRF-IGSKDNETANITTKDDIVYKIKVDPVYLQNTNNVIIGSIVNIE 191

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           DI++  + +              + +SDF+A VSHE++TPLT+I GF E +K+     + 
Sbjct: 192 DITKKVKLE--------------NMRSDFVANVSHELKTPLTSISGFVETLKSNE--NID 235

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
                 +   I+   + +  +++D+L +S +E+ K  L  E V + +   E   + Q  A
Sbjct: 236 VNTRNRFLEIIESESDRLKRLIDDILLLSFVEN-KDTLLMENVVVYDVFKEVYEITQHSA 294

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
           +EK I +     +    IL++   +KQ+ LN++ NAI +T   G + +       E++++
Sbjct: 295 SEKNIEVLYKCDDKSISILSNKDYIKQVFLNLVDNAIKYTQDNGIVQV-VVLKDEEKIVI 353

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
           +V D GVG+   ++E+  + F ++  ++     GTGLGL + K +V +  G   + S   
Sbjct: 354 KVIDNGVGIPKEDVERIFERFYRVDKARSRDVGGTGLGLAITKHIVKSLNGCIKVKSELG 413

Query: 800 KGTLIEIIF 808
            G+   +  
Sbjct: 414 IGSEFIVTI 422


>gi|296449930|ref|ZP_06891694.1| phosphate regulon sensor histidine kinase protein PhoR [Clostridium
           difficile NAP08]
 gi|296261200|gb|EFH08031.1| phosphate regulon sensor histidine kinase protein PhoR [Clostridium
           difficile NAP08]
          Length = 441

 Score =  304 bits (779), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 84/369 (22%), Positives = 172/369 (46%), Gaps = 30/369 (8%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQ 503
            +++ + +QL SIL++ S GI  I+  G IL  N    ++       ++      V +++
Sbjct: 79  EEVQYKHLQLKSILKSISHGILAIDVNGNILLINDEAKEMIKSEPNQLVEGHNINVVIKE 138

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMH 559
                    L +IL   +     +    +TK++ +  +++    L  ++       + + 
Sbjct: 139 E------EILKQILRF-IGSKDNETANITTKDDIVYKIKVDPVYLQNTNNVIIGSIVNIE 191

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           DI++  + +              + +SDF+A VSHE++TPLT+I GF E +K+     + 
Sbjct: 192 DITKKVKLE--------------NMRSDFVANVSHELKTPLTSISGFVETLKSNE--NID 235

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
                 +   I+   + +  +++D+L +S +E+ K  L  E V + +   E   + Q  A
Sbjct: 236 VNTRNRFLEIIESESDRLKRLIDDILLLSFVEN-KDTLLMENVVVYDVFKEVYEITQHSA 294

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
           +EK I +     +    IL++   +KQ+ LN++ NAI +T   G + +       E++++
Sbjct: 295 SEKNIEVLYKCDDKSISILSNKDYIKQVFLNLVDNAIKYTQDNGIVQV-VVLKDEEKIVI 353

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
           +V D GVG+   ++E+  + F ++  ++     GTGLGL + K +V +  G   + S   
Sbjct: 354 KVIDNGVGIPKEDVERIFERFYRVDKARSRDVGGTGLGLAITKHIVKSLNGCIKVKSELG 413

Query: 800 KGTLIEIIF 808
            G+   +  
Sbjct: 414 IGSEFIVTI 422


>gi|255656614|ref|ZP_05402023.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-23m63]
          Length = 758

 Score =  304 bits (779), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 84/369 (22%), Positives = 172/369 (46%), Gaps = 30/369 (8%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQ 503
            +++ + +QL SIL++ S GI  I+  G IL  N    ++       ++      V +++
Sbjct: 79  EEVQYKHLQLKSILKSISHGILAIDVNGNILLINDEAKEMIKSEPNQLVEGHNINVVIKE 138

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMH 559
                    L +IL   +     +    +TK++ +  +++    L  ++       + + 
Sbjct: 139 E------EILKQILRF-IGSKDNETANITTKDDIVYKIKVDPVYLQNTNNVIIGSIVNIE 191

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           DI++  + +              + +SDF+A VSHE++TPLT+I GF E +K+     + 
Sbjct: 192 DITKKVKLE--------------NMRSDFVANVSHELKTPLTSISGFVETLKSNE--NID 235

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
                 +   I+   + +  +++D+L +S +E+ K  L  E V + +   E   + Q  A
Sbjct: 236 VNTRNRFLEIIESESDRLKRLIDDILLLSFVEN-KDTLLMENVVVYDVFKEVYEITQHSA 294

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
           +EK I +     +    IL++   +KQ+ LN++ NAI +T   G + +       E++++
Sbjct: 295 SEKNIEVLYKCDDKSISILSNKDYIKQVFLNLVDNAIKYTQDNGIVQV-VVLKDEEKIVI 353

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
           +V D GVG+   ++E+  + F ++  ++     GTGLGL + K +V +  G   + S   
Sbjct: 354 KVIDNGVGIPKEDVERIFERFYRVDKARSRDVGGTGLGLAITKHIVKSLNGCIKVKSELG 413

Query: 800 KGTLIEIIF 808
            G+   +  
Sbjct: 414 IGSEFIVTI 422


>gi|153938174|ref|YP_001389703.1| sensory box histidine kinase [Clostridium botulinum F str.
           Langeland]
 gi|170754692|ref|YP_001779988.1| sensory box histidine kinase [Clostridium botulinum B1 str. Okra]
 gi|152934070|gb|ABS39568.1| sensory box histidine kinase [Clostridium botulinum F str.
           Langeland]
 gi|169119904|gb|ACA43740.1| sensory box histidine kinase [Clostridium botulinum B1 str. Okra]
 gi|295317791|gb|ADF98168.1| sensory box histidine kinase [Clostridium botulinum F str. 230613]
          Length = 615

 Score =  304 bits (779), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 91/397 (22%), Positives = 173/397 (43%), Gaps = 11/397 (2%)

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
           +  +   N+  N ++ +++  R  ++ +         ++  + D I +  R G I+  N 
Sbjct: 192 RQKEEEVNILANKLDQKEMQKRCMEQLLIKNENCYNLLIRNSKDAILVH-RYGKIIFANE 250

Query: 480 AVSKLFGYPVED-ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
            + ++ GY  E           + ++  + +   L  + S      ++        + K 
Sbjct: 251 RLKQMLGYKKEYNFEDIDIKSLIPEDQYNFVKDQLKNLYS-GSEDIVKFQHNVINNKGKT 309

Query: 539 LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK------SDFLARV 592
           +                  +HD++   Q +      KK  E  +  +      ++FL+ +
Sbjct: 310 IQNTSTYVIYDGIPTIFSILHDVTSKIQVEKLEQDVKKNIELLNESREYNKLITEFLSNI 369

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHE++TPL  I    + +         + +  +Y   I ++   ++ ++N+LLD +K++S
Sbjct: 370 SHELKTPLNVIFTAVQ-LLGFYEEDCNDEKQDKYLKLIKQNCYRLMKLINNLLDTTKLDS 428

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712
           G + L+    ++   + E    V  YA  K I I          I  D   +++I LN+L
Sbjct: 429 GYLKLNLVNYNIVNLIEEITLSVTSYAESKGINIIFDTNVEEKIIAVDTDKIERIILNLL 488

Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           SNAI FT  GG I ++    S E V + V+DTGVG+ + +LE   + F Q+  + +   E
Sbjct: 489 SNAIKFTNPGGNIFVNVK-DSGENVYVHVKDTGVGIPSDKLESIFERFFQVDKTLKKNKE 547

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GTG+GL L K+ V+ + G  +I S   +GT   I  P
Sbjct: 548 GTGIGLHLVKSFVEMHKGTVHIKSELGQGTEFIIKLP 584


>gi|329121387|ref|ZP_08250012.1| PAS/PAC sensor sensor histidine kinase [Dialister micraerophilus
           DSM 19965]
 gi|327469677|gb|EGF15144.1| PAS/PAC sensor sensor histidine kinase [Dialister micraerophilus
           DSM 19965]
          Length = 650

 Score =  304 bits (779), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 75/366 (20%), Positives = 154/366 (42%), Gaps = 28/366 (7%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
             ME +   +  ++    DGI ++N +  I+  NR   K+F    +   RK  +++ + +
Sbjct: 229 EDMEEDRNNIRIVMNTIYDGIILLNDKKEIIDYNRRAEKIFNPSEDKRFRKISSMYCDHD 288

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-CYSLTMHDISE 563
               ++    +        T+          +K   + +    LP       + + D++ 
Sbjct: 289 WLRAVDRAYRDANRQKYTMTIA---------DKPFKVIMTRTILPEEQHGVLIVLRDMT- 338

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
                                + +F A VSHE++TPLT I GF+E+I             
Sbjct: 339 -------------AEHIAEKMRREFSANVSHELKTPLTTISGFAEMIAKGMC--KDTEDI 383

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
             ++N I +    +L +++ ++ +SKIE  +  + ++ VS+D  +     L+   A +K 
Sbjct: 384 KNFSNKIHQESRRMLSLIDTIMHLSKIEEKETTISWKLVSVDSVLKYVADLITSQATKKD 443

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
           + I          +  +   + ++ +N+L NA+ +   GG I +       + + + + D
Sbjct: 444 LKINLDIEP--VYMYGNAALLSELFMNLLDNAVKYNVEGGNITVHIKRVKEKLMKITISD 501

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TGVG+   +  +  + F ++  S+     G+GLGL + K +++ + GK  I S   KGT 
Sbjct: 502 TGVGIPEEKQNRVFERFFRVEESRNKATGGSGLGLSICKHIIERHNGKIEISSIEGKGTT 561

Query: 804 IEIIFP 809
           +    P
Sbjct: 562 VTAELP 567


>gi|75906587|ref|YP_320883.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
            29413]
 gi|75700312|gb|ABA19988.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
            29413]
          Length = 1184

 Score =  304 bits (779), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 116/822 (14%), Positives = 253/822 (30%), Gaps = 111/822 (13%)

Query: 90   DAH-GYLKEISEELPKTIGNYAFKMIG----------MRLCDVSDILHIDPNNHIGDLLK 138
            DA  G L   +E+  + +       +                               LL 
Sbjct: 245  DADSGKLVLTNEQAKQILRYNFEDSLELEEYVPVTPFAAFRCDGQPYTPYEYPLPRSLLT 304

Query: 139  RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
             +     +  L   + +++++ +   + PI +   +        +           +  +
Sbjct: 305  GEVISQEEMLLRWEDNSHIFISV--NSAPILNSQGQIVAAA--IVFQDITERKRLESELQ 360

Query: 199  RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKT 256
            + +++F  + E      S    ++                       T       + + T
Sbjct: 361  QREQEFKMVAENAPDIISRVDREFRHLYVSPAVEAATGIPPEVFIGKTNTELGMPEEICT 420

Query: 257  EKYPLLTSEESSLPEQ--EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS---- 310
              +  L     +  +Q  E            + +      +   +   ++     +    
Sbjct: 421  FWHENLQRAFDTGQKQVVEFSFPTPTGLRWYQSHLAPEFASDGSATTLVNIARDVTDYKR 480

Query: 311  --------------LSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYK 355
                                  +       +  P+    + S       N +   +    
Sbjct: 481  IEQALLDNEERLRLALTVAQAAQRQLATIFETSPVGIALLDSQQRFVAINQALAQINGLT 540

Query: 356  SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
              + +     ++ L              +     +     + A     + +R+       
Sbjct: 541  RQEHLGR--SITELFGESDPQVVQVFHDIY-TTGEPFISPSFAVNLPGRSDRQPGYY-NV 596

Query: 416  IPFEKANQFPENMPQNGIEPEDVDTRINKRKME---------IEVMQLCSILEATSDG-- 464
                  N   +         +  +    +R +             +   + LE  +    
Sbjct: 597  YYLPTTNSNHQVEDVLVYVLDVTEQVRLERGLRFLSETSKVLASSLDYQTTLERLAQLAV 656

Query: 465  --------IAIINREGIIL-----STNRA----VSKLFG-YPVEDILRKPFTVFLEQNTP 506
                    + ++   G +        + A      ++   YP+     +   + L     
Sbjct: 657  PELADWCTVHMVAENGSVEEIAVAHVDPAKLAWAEEIRRKYPLNLNDPRGAALTLRTGQS 716

Query: 507  SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH------- 559
             ++     E+L    R       L     +  +++      L   +     +        
Sbjct: 717  DLLIDIPDELLVQAARDPEHLEILRQVGFKSAMTV-----PLRTQTRTLGVISFICAESG 771

Query: 560  ---DISEWKQEKNKLSH----------------AKKIAEKESSHKSDFLARVSHEIRTPL 600
               D S  +  +                      +  AE  +  K +FLA +SHE+R+PL
Sbjct: 772  HKYDQSSMQLAEELAYRASLAIDNAHLYRLAQSDRTKAEAANRIKDEFLAVLSHELRSPL 831

Query: 601  TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
              I+G+S +++ ++  P    +  +    I+R+  L   ++ DLLD+S+I  GKM L+  
Sbjct: 832  NPILGWSRILRTKQLSPT---KVDQALETIERNAKLQAQLIEDLLDVSRILQGKMTLNVA 888

Query: 661  PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720
            PV+L   ++ A+  VQL A  K I I+T+       ++ D   ++Q+  N+LSNA+ FTP
Sbjct: 889  PVNLAATITAALETVQLAAEAKNIHIQTTLKPIAGNVVGDQNRLQQVIWNLLSNAVKFTP 948

Query: 721  SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
            SGGQI +      N    ++V+D+G G+    L    + F Q   +   +  G GLGL +
Sbjct: 949  SGGQIEVQLAQV-NLYAQIQVKDSGKGIAREFLPYVFEYFRQEDGATTRKFGGLGLGLAI 1007

Query: 781  AKAMVDANMGKFYIFSTPAK--GTLIEIIFP--LYDTSHPHD 818
             +   + + G  ++ S   +  G    +  P  L +   P D
Sbjct: 1008 VRHFTELHGGTVHVSS-LGQDLGATFTVRLPLNLVEQELPAD 1048



 Score =  110 bits (275), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 46/367 (12%), Positives = 112/367 (30%), Gaps = 25/367 (6%)

Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHT----INLNQYTKKQYFGTLQNNSKES 299
            E +      +  ++     +E+ ++  +E   +    +  N Y   Q       +  E 
Sbjct: 150 DEVFPELVGGVAYQELHRAVAEQVAVSWEEFGESVQCCLEANAYPFAQGVAVYFRDITER 209

Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH--GNLFYANPSFLLLTKYKSV 357
            +  +      L    +         + + P    +     G L   N     + +Y   
Sbjct: 210 KK--AEAERERLLHELETERTRFEAVLRQMPAGVMIADADSGKLVLTNEQAKQILRYNFE 267

Query: 358 DDIEIAGGLSTLLDAPKLSDNNA----IKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
           D +E+   +     A    D         P+         I+    L  ++W   + + +
Sbjct: 268 DSLELEEYVPVTPFAAFRCDGQPYTPYEYPLPRSLLTGEVISQEEML--LRWEDNSHIFI 325

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
           +       N   + +    +  +  + +  + +++    +   + E   D I+ ++RE  
Sbjct: 326 SVNSAPILNSQGQIVAAAIVFQDITERKRLESELQQREQEFKMVAENAPDIISRVDREFR 385

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVF-LEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
            L  + AV    G P E  + K  T   + +   +  +  L        +Q +E      
Sbjct: 386 HLYVSPAVEAATGIPPEVFIGKTNTELGMPEEICTFWHENLQRAFDTGQKQVVEFSFPTP 445

Query: 533 TKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKE---SSHK 585
           T    L   +  +     S            D++++K+ +  L   ++        +   
Sbjct: 446 TG---LRWYQSHLAPEFASDGSATTLVNIARDVTDYKRIEQALLDNEERLRLALTVAQAA 502

Query: 586 SDFLARV 592
              LA +
Sbjct: 503 QRQLATI 509



 Score =  108 bits (269), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 62/600 (10%), Positives = 158/600 (26%), Gaps = 71/600 (11%)

Query: 20  GNTQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPI 79
           G+ Q+L+ + I        ++++      F Q     Q  + V++        T +    
Sbjct: 56  GSEQNLTDEVIS--VNAGNAEQQPILATVFNQDINNHQQLQLVTSPETECQVTTILESIT 113

Query: 80  PRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR 139
              V F    D + +   +++   K +     ++IG     V D +  +    +      
Sbjct: 114 DAFVAF----DENWHYTYVNQAAVKILHKTPVELIGKH---VWDEVFPELVGGVAYQELH 166

Query: 140 QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI-VHVNRVDNDPRALGK 198
           +         W   G ++   ++  A P           +G  +            A  +
Sbjct: 167 RAVAEQVAVSWEEFGESVQCCLEANAYPF---------AQGVAVYFRDITERKKAEAERE 217

Query: 199 RL-------DKKFSHLHEIKKG--HSSVEKEKYDIFSQQSPPPHLRM--KNKVSSLTEYY 247
           RL         +F  +          +       + + +     LR   ++ +       
Sbjct: 218 RLLHELETERTRFEAVLRQMPAGVMIADADSGKLVLTNEQAKQILRYNFEDSLELEEYVP 277

Query: 248 AHKDDVLKTEKYPLLT---SEESSLPEQEDFHTINLNQYTKK-----------QYFGTLQ 293
                  + +  P          SL   E      +    +                +  
Sbjct: 278 VTPFAAFRCDGQPYTPYEYPLPRSLLTGEVISQEEMLLRWEDNSHIFISVNSAPILNSQG 337

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLT 352
                +  +        L +   + E       +  P     V       Y +P+    T
Sbjct: 338 QIVAAAIVFQDITERKRLESELQQREQEFKMVAENAPDIISRVDREFRHLYVSPAVEAAT 397

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
                  I      +T L  P+       + +                 T          
Sbjct: 398 GIPPEVFIGK---TNTELGMPEEICTFWHENLQRAFDTGQKQVVEFSFPTPT----GLRW 450

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC--------------SIL 458
                  +            I  +  D +  ++ +     +L               +I 
Sbjct: 451 YQSHLAPEFASDGSATTLVNIARDVTDYKRIEQALLDNEERLRLALTVAQAAQRQLATIF 510

Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
           E +  GIA+++ +   ++ N+A++++ G   ++ L +  T    ++ P V+  +     +
Sbjct: 511 ETSPVGIALLDSQQRFVAINQALAQINGLTRQEHLGRSITELFGESDPQVVQVFHDIYTT 570

Query: 519 LDLRQTLEKITLGSTKEEKL-----LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH 573
            +   +         + ++      +                + + D++E  + +  L  
Sbjct: 571 GEPFISPSFAVNLPGRSDRQPGYYNVYYLPTTNSNHQVEDVLVYVLDVTEQVRLERGLRF 630



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 50/399 (12%), Positives = 115/399 (28%), Gaps = 37/399 (9%)

Query: 219 KEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTI 278
                  S     P  R    ++S        D+    +        E           +
Sbjct: 4   DTTGKFVSNWDSEPKHRYSVSLTSTAW--RSLDEEAHKQGISRSELIEHFARHLGSEQNL 61

Query: 279 NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH 338
                +        Q      F    + +         E E      ++     F  +  
Sbjct: 62  TDEVISVNAGNAEQQPILATVFNQDINNHQQLQLVTSPETECQVTTILESITDAFVAFDE 121

Query: 339 G-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397
             +  Y N + + +     V+ I            P+L    A + +    +++  ++  
Sbjct: 122 NWHYTYVNQAAVKILHKTPVELIGKHVWDEVF---PELVGGVAYQELHRAVAEQVAVSWE 178

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK-------MEIE 450
                           +     +AN +P          +  + +  + +       +E E
Sbjct: 179 ------------EFGESVQCCLEANAYPFAQGVAVYFRDITERKKAEAERERLLHELETE 226

Query: 451 VMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVED-------ILRKPFTVFLE 502
             +  ++L     G+ I + + G ++ TN    ++  Y  ED       +   PF  F  
Sbjct: 227 RTRFEAVLRQMPAGVMIADADSGKLVLTNEQAKQILRYNFEDSLELEEYVPVTPFAAFRC 286

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TM 558
              P     Y      L      ++  L   ++   + + +    +  S    +      
Sbjct: 287 DGQPYTPYEYPLPRSLLTGEVISQEEMLLRWEDNSHIFISVNSAPILNSQGQIVAAAIVF 346

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
            DI+E K+ +++L   ++  +  + +  D ++RV  E R
Sbjct: 347 QDITERKRLESELQQREQEFKMVAENAPDIISRVDREFR 385


>gi|332766037|gb|EGJ96247.1| his Kinase A domain protein [Shigella flexneri 2930-71]
          Length = 933

 Score =  304 bits (778), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 99/495 (20%), Positives = 186/495 (37%), Gaps = 41/495 (8%)

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
             P+   +             + LT  +S    +                    + ++L 
Sbjct: 223 TLPMGVTILDENGHT-----LISLTGPESKIKGDPRWMQERSWFGY----TEGFRELVLK 273

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV---DTRINK 444
           ++      +      +    E    +              +       E         + 
Sbjct: 274 KNLPPSSLSIVYSVPVDKVLERIRMLILNAILLNVLAGAALFTLARMYERRIFIPAESDA 333

Query: 445 RKMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            ++E        I+ +   GI I+   +G+ + +N            +  ++        
Sbjct: 334 LRLEEHEQFNRKIVASAPVGICILRTADGVNILSNELAHTYLNMLTHEDRQR-------- 385

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                    LT+I+       ++      T     L +  +  +    +     + D+S 
Sbjct: 386 ---------LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSS 432

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + +  L    + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R 
Sbjct: 433 RVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR- 490

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
                 ++ S +L+L I++D+LD SKIES ++ +     S  E ++   +        K+
Sbjct: 491 --LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQ 548

Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           + +      ++P  +  D   ++Q+  N+LSNAI FT +G  I++       + + +RVR
Sbjct: 549 LGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG-CIVLHVR-ADGDYLSIRVR 606

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTGVG+   E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+
Sbjct: 607 DTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGS 666

Query: 803 LIEIIFPLYDTSHPH 817
              +  PLY   +P 
Sbjct: 667 QFTVRIPLYGAQYPQ 681


>gi|301061357|ref|ZP_07202137.1| PAS domain S-box protein [delta proteobacterium NaphS2]
 gi|300444534|gb|EFK08519.1| PAS domain S-box protein [delta proteobacterium NaphS2]
          Length = 492

 Score =  304 bits (778), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 110/471 (23%), Positives = 210/471 (44%), Gaps = 34/471 (7%)

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH------TIQWNRENSLA 412
           +I  A  +  LL   K+   +  + +   R     I              ++  ++ +  
Sbjct: 42  EILGAEHIDILLLDLKMPVMSGEEVLERTRDTHPDIPVIVITGHGTVDTAVECMKKGAYD 101

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK-------MEIEVMQLCSILEATSDGI 465
               PF+                 ++  +  + +       + +E  +L +I+   ++G+
Sbjct: 102 FITKPFQIDQFLLTIERAADKRHLELKAKQFEAENVRNLYDLNLEKSRLKTIINCMANGV 161

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
            + NR   ++  N A+ +L     + +   P +  +       +   L ++L+ +  QT 
Sbjct: 162 MVTNRNLEVVLNNPALMRLMEITEKPVSPVPISEIITDED---LVATLKKLLNGETPQTE 218

Query: 526 EKITLGSTKEEKLLSLRI-IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
                   K+  L +L    +      +     + DI+ +KQ                  
Sbjct: 219 SISQEFRIKQNTLRALSAPAMDPDGAIAGTVTVLEDITAFKQLDE--------------M 264

Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
           KSDF+  V+HE+R+PL AI   + V+     GPL   +  ++        + +L+++NDL
Sbjct: 265 KSDFVNMVAHELRSPLVAIRQLNSVLLEGLAGPL-QEKQQDFIKRGVAKIDSLLNLINDL 323

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704
           LDI+K+E+GK   H  P  + + + E + L++  A ++ IL+      N+  + AD + +
Sbjct: 324 LDIAKLEAGKFIQHRVPTDIGKIIKEILELMEPRAQKQHILLSHHL-ENLKPVQADPKRI 382

Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764
           ++I  N++SNAI+++P GG++ +S        + +RV DTGVG+T  EL K    F ++ 
Sbjct: 383 EEIFNNLISNAINYSPQGGRVTVS-AKGQGAYMEIRVEDTGVGITEEELPKIFDKFYRVK 441

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
           N +  +  GTGLGL + K +VDA+ G   + S P KGT  +I+ P+ DT  
Sbjct: 442 NPKTRQVVGTGLGLAIVKGVVDAHQGSIQVESIPDKGTTFKILLPVIDTEE 492


>gi|160936693|ref|ZP_02084060.1| hypothetical protein CLOBOL_01584 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440484|gb|EDP18229.1| hypothetical protein CLOBOL_01584 [Clostridium bolteae ATCC
           BAA-613]
          Length = 1071

 Score =  304 bits (778), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 97/519 (18%), Positives = 196/519 (37%), Gaps = 33/519 (6%)

Query: 314 YFDEGENLTPETVDKCPIPFFVYSHGN---LFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
                +N     +    +    +       + +AN  +  +  Y   D            
Sbjct: 274 ELMRTKNEQEMLMSAMEVSVSRHLMDEHFTVIWANECYYRMIGYTKEDYETRFHNCCDAY 333

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
                +    I   +   ++    +  A L  ++    +   +  + F            
Sbjct: 334 FWDNETGLRIINENIQSMTNADEKSYEAYL-PLKMPDGSMRWVKIVGFLTDEYMDGIQIA 392

Query: 431 NGIEPEDVDTRINKRKMEIEVMQL-CSILEA--TSDGIAIINREGIILSTNRAVSKLFGY 487
                +  D    +++  I    +   I+       GI +++    I         +F  
Sbjct: 393 YTTMIDVTDLVQTQKERSIAYENIPGFIVRHRILPQGIVMLDASERI-------KDIFDV 445

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
            +EDI        +   +  ++  +   +   +  +   +I     ++         I  
Sbjct: 446 SMEDIAAIDPLEVMSGESRELIISHFPGLRRGEPLEATIRIKDKYDRDRWFHFNSTCIDT 505

Query: 548 LPFSSCYSLTMHDISE-------WKQEKN---KLSHAKKIAEKESSHKSDFLARVSHEIR 597
           +     Y     DI++        ++ +     L+ A + A+  ++ KSDFL+R+SH+IR
Sbjct: 506 ISDDPVYLSMFIDITDITELRELQRKLEERTDMLNSALEAAKYANAAKSDFLSRMSHDIR 565

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TP+  I G +E+            R  +    I  S + +L ++ND+LD+SKIE+G  ++
Sbjct: 566 TPMNVITGMAEIAAAHIG---DQDRVKDCLQKIRLSSHHLLGLINDVLDMSKIENGNFSI 622

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILADLRSVKQIALNILSNAI 716
              P+ L + + E I++V     +                 ++D    +QI LN+LSNA 
Sbjct: 623 SMAPMCLPDELQEIITIVLPGIRKMNQRFDVYLEGPGWENFMSDALRFRQILLNLLSNAS 682

Query: 717 HFTPSGGQIIISTTHTS-----NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
            FTP  G+II+              +   V D G+GM+   LE+  +PF +  +S+  + 
Sbjct: 683 KFTPKDGRIILKIEIQETESAKKAMICFTVSDNGIGMSPEYLEQIFEPFTRERDSRIDQI 742

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           EG+GLG+ + K ++D   G   + S    GT+ +++ P+
Sbjct: 743 EGSGLGMAITKRLIDLLGGTITVKSQLGVGTVFDVLMPM 781



 Score = 45.4 bits (106), Expect = 0.038,   Method: Composition-based stats.
 Identities = 28/281 (9%), Positives = 73/281 (25%), Gaps = 26/281 (9%)

Query: 334 FVYSHGNLFYANPSFLLLTKYKSV--DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR 391
            V  H    +AN  +  L +Y     + +          + PK      +   +    ++
Sbjct: 29  LVDDHFTCIWANDYYYELIRYPKPLYEHLFRNHCDEYFYNNPK--GWTRLTEQVHSALEQ 86

Query: 392 TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV 451
                S  L  I  +      +                      +  D    + + +   
Sbjct: 87  GKSGYSLYLPMIYPDGGT-FWVRLQAVFTDEFINGYRVSYTTMVDVTDMMQARLEQKETR 145

Query: 452 MQL-------CSILEATSDGIA--IINREGIILSTNRAVSKLFGYPV---EDILRKPFTV 499
                       I+ A +  ++  +I+     +  N    KL GY     E +       
Sbjct: 146 QDFDKMMQEQAMIMSALNISVSKHLIDEHYTCVLANEYYYKLIGYSKARYEALFHNHPDE 205

Query: 500 FLE--QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL-RIIIKKLPFSSCYSL 556
           F         ++   +  +L  +     E I     ++     +  +      +   + +
Sbjct: 206 FFANNPEGWELLTSKVEAVLKNNGDG-YEAIVPMKYEDGSSYWVKLVSFFTDEYIDGFRI 264

Query: 557 ---TMHDISEWKQE--KNKLSHAKKIAEKESSHKSDFLARV 592
               M D++E  +   + ++  +            +    +
Sbjct: 265 SYTVMTDVTELMRTKNEQEMLMSAMEVSVSRHLMDEHFTVI 305


>gi|39996515|ref|NP_952466.1| sensory box histidine kinase/response regulator [Geobacter
           sulfurreducens PCA]
 gi|39983396|gb|AAR34789.1| sensory box histidine kinase/response regulator [Geobacter
           sulfurreducens PCA]
 gi|307634841|gb|ADI84254.2| sensor histidine kinase response regulator, PAS and PAC
           domain-containing [Geobacter sulfurreducens KN400]
          Length = 844

 Score =  304 bits (778), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 97/682 (14%), Positives = 215/682 (31%), Gaps = 78/682 (11%)

Query: 165 ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDI 224
           A P+   N    G     ++  N V           D++     E      ++   +   
Sbjct: 61  ASPLRDDNGAVVG---VVVLTFNGVQTG------ASDERLRLFTEHAPAALAMFDREMRY 111

Query: 225 FSQQSP--PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQED-FHTINLN 281
            +        +      +  ++ Y    +   + +           +  +ED F   +  
Sbjct: 112 LAVSRRWREDYGLGDGDILGMSHYDIFPEIGEEWKSVHRRGLAGEVIRVEEDCFVRADGR 171

Query: 282 QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGN 340
               +                +      + +   +    L    +D+  I  F V  +G 
Sbjct: 172 TQWLRWEVRPWYEGEGRVGGVVIFTEDITRAKVSERELRLARFCMDESAIAIFSVAENGR 231

Query: 341 LFYANPSFLLLTKYKSVDD-IEIAGGLSTLLDAPKLSDNNAIKPVM--------LYRSDR 391
           +  AN        Y   +        +           + A               R D 
Sbjct: 232 IIDANRRACEGLGYSRDELCSLTVFDIDPTFSDDSWLRHRANIRERGSGTIETLHRRKDG 291

Query: 392 TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV 451
           +       +  + +  E                           +  + +  +  +    
Sbjct: 292 SVFPVEITVTYLDFEGERF-------------------SFSFAHDITERKQAEAAVRESE 332

Query: 452 MQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
            +  +I +  +    II+ E G I+  N A +  +G+ V ++     +  +     S + 
Sbjct: 333 EKFRNIFQDHAAAKLIIDPESGAIVDANNAAALFYGWSVAELCGMKISK-INTLPFSQVK 391

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI--IIKKLPFSSCYSLTMHDISEWKQEK 568
             + +  +    +           +  ++ + +     ++         +HDI+E ++  
Sbjct: 392 EEMDKARNSGNTR---FEFQHRKADGSIVDVEVYSSKVRIGGKEYLHSIIHDITEKRKLG 448

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
           ++L  A+K+          F   V+H+    LT I G   ++   R     +P+++   +
Sbjct: 449 DQLRQAQKM-----ESIGTFAGGVAHDFNNILTVITGCGSML---RLKLEQHPQFLPLLD 500

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I +S      +   LL  S+    K  +  +   L E V++    +Q     + I ++ 
Sbjct: 501 QILKSSEKAATLTRSLLAFSR----KQVIVPKQHDLAEIVADMEKFLQ-RIIGEDIDLKF 555

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI----------IISTTH---TSNE 735
           S  +    +  D   ++Q+ +N+ +NA      GG +           IS +       +
Sbjct: 556 SLPSYGLPVSVDQGQIEQVIVNLAANARDAMTEGGMLAIGADMVRLDTISASLHGCRPGD 615

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
             +L V D+G+GM +   EK   PF          G+GTGLGL +   ++  + G   ++
Sbjct: 616 YALLTVTDSGIGMDDATKEKIFDPFFTTKP----VGKGTGLGLAMVYGIIKQHDGVITVY 671

Query: 796 STPAKGTLIEIIFPLYDTSHPH 817
           +   +GT   I  PL   +  H
Sbjct: 672 TEVGRGTTFRIYLPLAAGAREH 693



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/355 (8%), Positives = 85/355 (23%), Gaps = 19/355 (5%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D       +S    +  G     ++GM   D+   +  +  +     L  +     +   
Sbjct: 106 DREMRYLAVSRRWREDYGLGDGDILGMSHYDIFPEIGEEWKSVHRRGLAGEVIRVEEDCF 165

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
              +G   ++  ++   P Y       G   F                +           
Sbjct: 166 VRADGRTQWLRWEV--RPWYEGEGRVGGVVIF--TEDITRAKVSERELRLARFCMDESAI 221

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
                +   +      ++++       ++++ SLT +         +         E   
Sbjct: 222 AIFSVAENGR--IIDANRRACEGLGYSRDELCSLTVFDIDPTFSDDSWLRHRANIRERGS 279

Query: 270 PEQEDFHTI-NLNQYTKKQYFG--TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
              E  H   + + +  +        +                   A   E E       
Sbjct: 280 GTIETLHRRKDGSVFPVEITVTYLDFEGERFSFSFAHDITERKQAEAAVRESEEKFRNIF 339

Query: 327 DKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIE-IAGGLSTLLDAPKLSDNNAIK- 382
                   +     G +  AN +  L   +   +        ++TL  +    + +  + 
Sbjct: 340 QDHAAAKLIIDPESGAIVDANNAAALFYGWSVAELCGMKISKINTLPFSQVKEEMDKARN 399

Query: 383 ------PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
                      ++D + +        ++   +  L        +  +  + + Q 
Sbjct: 400 SGNTRFEFQHRKADGSIVDVEVYSSKVRIGGKEYLHSIIHDITEKRKLGDQLRQA 454



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/150 (12%), Positives = 51/150 (34%), Gaps = 9/150 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            +++  +G + + +    + +G    ++  + + D+      D        ++ + +   
Sbjct: 223 IFSVAENGRIIDANRRACEGLGYSRDELCSLTVFDIDPTFSDDSWLRHRANIRERGSGTI 282

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFR-GFGIVHVNRVDNDPRALGKRLDKKF 204
           +T     +G+   V I +  L       +F G R  F   H         A  +  ++KF
Sbjct: 283 ETLHRRKDGSVFPVEITVTYL-------DFEGERFSFSFAHDITERKQAEAAVRESEEKF 335

Query: 205 SHL-HEIKKGHSSVEKEKYDIFSQQSPPPH 233
            ++  +       ++ E   I    +    
Sbjct: 336 RNIFQDHAAAKLIIDPESGAIVDANNAAAL 365


>gi|121998928|ref|YP_001003715.1| multi-sensor hybrid histidine kinase [Halorhodospira halophila SL1]
 gi|121590333|gb|ABM62913.1| multi-sensor hybrid histidine kinase [Halorhodospira halophila SL1]
          Length = 680

 Score =  304 bits (778), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 90/430 (20%), Positives = 175/430 (40%), Gaps = 22/430 (5%)

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
           +  Y        A   +  +          +             +          + +  
Sbjct: 110 IRFYAGVPLITPAGQPIGVLCIQDRQPRRFSDEDLIPLQDLAVLLISELELRHRENVQRL 169

Query: 444 KRKMEIEVMQLCSILEATS-DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
           +R++E    +L +I +A +   +   + EGII  T+     LFGY   +++ +P  +   
Sbjct: 170 RRQLEHRQRELEAIFQAATSVSLIKTDLEGIIQETSTGTEALFGYARHELIGRPVALVHR 229

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TM 558
               +     +  + +      + +       +         +  +  +    +      
Sbjct: 230 PEDHTQPGTIIERLRNDRTP--VRREMPLMRSDGSTFPALFSVHPITDAHDELIATLSVT 287

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            DIS+ K+ + +L       E+    KSDFL  VSH++RTPL A++GFS+++      P 
Sbjct: 288 FDISDQKRVEQEL-------EQAVRAKSDFLNAVSHDLRTPLNALMGFSQLLAETDLTP- 339

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
                  YA +  R G  +  +++ LL++S+++SG M  H EP++L   + E  +L +  
Sbjct: 340 --EERQRYAEHCRRGGERLHGLIDSLLELSRLQSGGMRAHTEPLALPALIEEQCALFRPA 397

Query: 679 ANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737
           A  K I +    + ++P  I  D   ++Q   N++ NAI +T +G  + I T     E++
Sbjct: 398 AERKGIELACQISADLPRWIQGDRTRLEQALSNLIDNAIKYTEAG-HVRI-TASAEGEQI 455

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
            L V DTG G+     ++    F +     Q   +G GLGL +A+ +     G  ++ S 
Sbjct: 456 TLAVEDTGPGIPAENRDRIFAAFDRGN--YQGEQQGHGLGLAIAREIAQLMGGNLHLDSE 513

Query: 798 PAKGTLIEII 807
             +GT   + 
Sbjct: 514 QGRGTTFTLT 523



 Score = 51.2 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 51/460 (11%), Positives = 116/460 (25%), Gaps = 38/460 (8%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR-QNTWYGK 146
             D  G ++E S       G    ++IG  +  V           I + L+  +     +
Sbjct: 194 KTDLEGIIQETSTGTEALFGYARHELIGRPVALVHRPEDHTQPGTIIERLRNDRTPVRRE 253

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGF--RGFGIVHVNRVDNDPRALGKRLDKKF 204
             L   +G+    P   +  PI   + E        F I    RV+ +     +      
Sbjct: 254 MPLMRSDGSTF--PALFSVHPITDAHDELIATLSVTFDISDQKRVEQELEQAVRAKSDFL 311

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPH---------LRMKNKVSSLTEYYAHKDDVLK 255
           + +    +   +       + ++    P           R   ++  L +       +  
Sbjct: 312 NAVSHDLRTPLNALMGFSQLLAETDLTPEERQRYAEHCRRGGERLHGLIDSLLELSRLQS 371

Query: 256 TE-KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
              +         +L E++        +    +    +  +     +    R   +LS  
Sbjct: 372 GGMRAHTEPLALPALIEEQCALFRPAAERKGIELACQISADLPRWIQGDRTRLEQALSNL 431

Query: 315 FDEGEN-------LTPETVDKCPIPFFVYSHG-NLFYANP-SFLLLTKYKSVDDIEIAGG 365
            D               + +   I   V   G  +   N           +    +   G
Sbjct: 432 IDNAIKYTEAGHVRITASAEGEQITLAVEDTGPGIPAENRDRIFAAFDRGNYQGEQQGHG 491

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
           L   +             +   +   T    +ARL T+             P +   Q  
Sbjct: 492 LGLAIAREIAQLMGGNLHLDSEQGRGTTFTLTARLQTLCEETTPHAQRPCQPAKGPPQPG 551

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN--REGIILSTNRAVSK 483
             +     E +  +  + +  +E    +L + +    DG+  ++  R+G           
Sbjct: 552 --LRILVAEDDPTNAILARTLLE----RLDAQVTVVEDGVTALHTWRDGTFDLL------ 599

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
           L    +  +        +               L     +
Sbjct: 600 LLDLQMPGLDGLQLARAIRHEENQEHRAPARIALFTAHAR 639


>gi|313620815|gb|EFR92041.1| sensor protein kinase WalK [Listeria innocua FSL S4-378]
          Length = 610

 Score =  304 bits (778), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 81/398 (20%), Positives = 169/398 (42%), Gaps = 29/398 (7%)

Query: 424 FPENMPQNGIEPEDVDTRINKRKM--EIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
             + + +       +  R+ + +   E E  +L S+L   +DG+   +R G ++  N   
Sbjct: 236 GVDEIGELADSFNTLTKRVQEAQAMTEGERRKLSSVLAYMTDGVIATDRRGKVILINTPA 295

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT-EILSLDLRQTLEKITLGSTKEEKLLS 540
            K+     E    +     L+          +  +      R TL+K  +          
Sbjct: 296 EKMLRVKHESANGRSIIDVLDIGDTYQFEDLMEVDGSLTMDRSTLDKPYVLRAN------ 349

Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
             +I ++  F++     +HDI++ ++   +              + DF++ VSHE+RTPL
Sbjct: 350 FSVIQRETGFNNGVIAVLHDITDQEKVDQE--------------RXDFVSNVSHELRTPL 395

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
           T++  + E + +  +          +          ++ +VNDLL +S+++ G+  L   
Sbjct: 396 TSMHSYLEALSDGAW--EDKEIAPRFLEVTQNETERMIRLVNDLLKLSRMDGGREQLEKS 453

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720
            V+  +  +  I   +    ++ I+ +         I  D   V Q+  NI+SNA  ++P
Sbjct: 454 FVNFTDFFNHIIDRFE-MMKKETIMFKRHIPKEPVIIEIDEDKVMQVLDNIISNANKYSP 512

Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
            GG+I        + E+ + + D G+G+ + +L      F ++  ++     GTGLGL +
Sbjct: 513 DGGRISFYLKKFED-EIEVSIADEGLGVPDEDLANVFDRFFRVDKARSREMGGTGLGLAI 571

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
           A+ +++A+ G+ +     +KGT+I+   P   +  P D
Sbjct: 572 AREVIEAHGGRIWAERNKSKGTIIKFTLP--YSDLPED 607


>gi|72382751|ref|YP_292106.1| two-component sensor histidine kinase [Prochlorococcus marinus str.
           NATL2A]
 gi|72002601|gb|AAZ58403.1| multi-sensor signal transduction histidine kinase [Prochlorococcus
           marinus str. NATL2A]
          Length = 689

 Score =  304 bits (778), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 80/394 (20%), Positives = 170/394 (43%), Gaps = 40/394 (10%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            +++   ++  S++   +DG  +++ +G I+  N    +LF +   ++  +     L  +
Sbjct: 291 EELKAAQVKQQSLIATMADGALLLDEQGNIVLVNPTARRLFRWEGRNLEGQNLLNQLPDS 350

Query: 505 TPSVMNHYLTEILSL-DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
               +   +T +L+       L        +  +++   +           ++T+ D++ 
Sbjct: 351 LVKELETPITSLLNNFGDSDDLRCNLEEPPRTLRIVLKSVRDTTGENIKGIAVTIQDLTR 410

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             Q               ++ +  F++ VSHE+RTPL  I  + E + +     L     
Sbjct: 411 EVQL--------------NAAQKRFISNVSHELRTPLFNIKSYVETLYD-LGEQLTKDEQ 455

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            E+    +   + +  +VND+LD+SK+ESG+  +  E +S+ EA+ + +   +L A EK 
Sbjct: 456 KEFLGVANSETDRLTRLVNDVLDLSKLESGR-TIQLEALSIKEAMEQTLRNYKLNAEEKN 514

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN--------- 734
           + +  +  NN+  +L +   + Q+  N++ NA+ F+  GG I +      +         
Sbjct: 515 VKLILNVENNLTFVLGNWDMLLQVFDNLVGNALKFSQEGGTINLKAYTWPDICVASPVDL 574

Query: 735 -------------EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
                         ++ + V DTG G++  + ++  + F ++ +S      GTGLGL + 
Sbjct: 575 DNKAPHCEILSPMPKIRVEVSDTGYGISEIDQQRIFERFYRVEDSVHTEV-GTGLGLSIV 633

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
           K +VD +  +  + S P  GT      PL D+  
Sbjct: 634 KGIVDKHGSEIRMASEPNTGTTFWFELPLEDSDA 667


>gi|291618164|ref|YP_003520906.1| RcsC [Pantoea ananatis LMG 20103]
 gi|291153194|gb|ADD77778.1| RcsC [Pantoea ananatis LMG 20103]
          Length = 949

 Score =  304 bits (778), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 94/391 (24%), Positives = 169/391 (43%), Gaps = 29/391 (7%)

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFG 486
           +         +    N  ++E        I+ +   GI I+   +G  + +N        
Sbjct: 333 LAWLFERRMFLPAEENAHRLEEHEQFNRKIVASAPVGICILRTSDGTNILSNELA----- 387

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
                     +   L Q     +N  +        +     +  GS      L +  +  
Sbjct: 388 --------HNYLTLLTQEDRKRLNEII-----GGQQVNFVDVLTGSNTN---LQISFVHS 431

Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
           +    +     + D+S   + +  L      AE+ S  KS FLA VSHE+RTPL  IIG 
Sbjct: 432 RYRNENVAICVLVDVSARVRMEQSLQEMAHAAEQASQSKSMFLATVSHELRTPLYGIIGN 491

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
            ++++ ++     +         ++ S +L+L I++D+LD SKIES ++ +   P S  E
Sbjct: 492 LDLLQTRQLPSGIDS----LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPRPFSPRE 547

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQI 725
            ++  +        +KR+ +     +++P+ L  D   ++Q+  N+L+NAI FT +G   
Sbjct: 548 VITHIVGNYLSLVVKKRLTLYCYIEHDVPQALDGDPLRLQQVISNLLNNAIKFTHTGC-- 605

Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
           II   + +   +  R RDTGVG+   EL +   PF Q+ N  Q   +GTGLGL + + ++
Sbjct: 606 IILHAYVTQGYLAFRTRDTGVGIPAKELTRLFDPFFQVGNGVQRNFQGTGLGLAICEKLI 665

Query: 786 DANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           +   G   + S P  G+   +  P+Y+   P
Sbjct: 666 NMMDGDIEVESEPGMGSQFIVRIPIYNGKQP 696


>gi|260856206|ref|YP_003230097.1| hybrid sensory kinase RcsC in two-component regulatory system with
           RcsB and YojN [Escherichia coli O26:H11 str. 11368]
 gi|257754855|dbj|BAI26357.1| hybrid sensory kinase RcsC in two-component regulatory system with
           RcsB and YojN [Escherichia coli O26:H11 str. 11368]
 gi|323152279|gb|EFZ38569.1| sensor kinase protein rcsC [Escherichia coli EPECa14]
          Length = 933

 Score =  304 bits (778), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 99/495 (20%), Positives = 186/495 (37%), Gaps = 41/495 (8%)

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
             P+   +             + LT  +S    +                    + ++L 
Sbjct: 223 TLPMGVTILDENGHT-----LISLTGPESKIKGDPRWMQERSWFGY----TEGFRELVLK 273

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV---DTRINK 444
           ++      +      +    E    +              +       E         + 
Sbjct: 274 KNLPPSSLSIVYSVPVDKVLERIRMLILNAILLNVLAGAALFTLARMYERRIFIPAESDA 333

Query: 445 RKMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            ++E        I+ +   GI I+   +G+ + +N            +  ++        
Sbjct: 334 LRLEEHEQFNRKIVASAPVGICILRTADGVNILSNELAHTYLNMLTHEDRQR-------- 385

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                    LT+I+       ++      T     L +  +  +    +     + D+S 
Sbjct: 386 ---------LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSS 432

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + +  L    + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R 
Sbjct: 433 RVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR- 490

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
                 ++ S +L+L I++D+LD SKIES ++ +     S  E ++   +        K+
Sbjct: 491 --LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQ 548

Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           + +      ++P  +  D   ++Q+  N+LSNAI FT +G  I++       + + +RVR
Sbjct: 549 LGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG-CIVLHVR-ADGDYLSIRVR 606

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTGVG+   E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+
Sbjct: 607 DTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGS 666

Query: 803 LIEIIFPLYDTSHPH 817
              +  PLY   +P 
Sbjct: 667 QFTVRIPLYGAQYPQ 681


>gi|260174306|ref|ZP_05760718.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|315922574|ref|ZP_07918814.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313696449|gb|EFS33284.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 713

 Score =  304 bits (778), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 90/386 (23%), Positives = 164/386 (42%), Gaps = 14/386 (3%)

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFG-YPVE 490
           I          +  ++     +  +L+  +  I + + +   +L  N++  +  G  P  
Sbjct: 197 IVSTATKRWQVEISLQQSQRTMQKVLDNINANIFVSDYDSLEVLFANKSFREEAGSVPER 256

Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL-RIIIKKLP 549
               K     L           L  + +      +      ++  E+  ++  + I  L 
Sbjct: 257 ATCWKMLNAGLGGACTHCPKPQL--LDANRKLTGVHFWEDYNSVTERWYTIQSMAINWLD 314

Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                     DI+  KQ + +L  AK+ AE+    KS FLA +SHEIRTPL AI+GFS +
Sbjct: 315 GRWAIMELATDITTRKQVELELIEAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSL 374

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           +       L       Y + +  +  L+L++++D+LDISKIE+G + L    V + +   
Sbjct: 375 LAETDEIEL----RQAYMSLVQENNELLLNLISDILDISKIEAGTIELTTGWVDVPQLCR 430

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
           E I+      ++  + +R   ++    I AD   + Q+  N ++NA+ FT  G  I +S 
Sbjct: 431 EVIATFSHKKHDGAVELRFDESSPQIVIDADKNRIMQVLSNFMTNALKFTTKGS-ITLSY 489

Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
           T   + +V   V DTG G+   +       F ++ +      +G GLGL + +++V+   
Sbjct: 490 TLNDDGQVRFCVTDTGKGIPAEQCHDIFNRFVKLDSF----VQGAGLGLSICQSLVERMG 545

Query: 790 GKFYIFSTPAKGTLIEIIFPLYDTSH 815
           GK  + S   KG+      P    + 
Sbjct: 546 GKIGVESCVGKGSCFWFTHPFTSATQ 571


>gi|118580419|ref|YP_901669.1| PAS/PAC sensor signal transduction histidine kinase [Pelobacter
           propionicus DSM 2379]
 gi|118503129|gb|ABK99611.1| PAS/PAC sensor signal transduction histidine kinase [Pelobacter
           propionicus DSM 2379]
          Length = 653

 Score =  304 bits (778), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 83/535 (15%), Positives = 189/535 (35%), Gaps = 45/535 (8%)

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY-ANPSFLLLTKYKSVDDIEIA 363
             +             +    V+  P               NP+   +  +K  + +  +
Sbjct: 122 ISDRKHAEDALRGANQMLEALVNASPPAILTLDLDLNLTLWNPAAERMFGWKIDEVLGKS 181

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
             +     + +L +        L R +      + RLH       + + ++       N 
Sbjct: 182 YPI----VSIELMEELKENIRRLNRGEERQSMETRRLHR----DGHFIDVSLSTAPMLNS 233

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVS 482
               +    I  +  + +  ++ +        +I +A +D   + + E G +L  N  + 
Sbjct: 234 EGGTIGYVAIMADISERKQAQQALRESEANYRAIFDAANDATFVFDVETGAMLDVNLKMC 293

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
           +++GY  E++L            P      +  I      Q+     L   +  +L  + 
Sbjct: 294 QMYGYLREEVLLLNVEQLSAGFPPYTFQDLMKLIWKTKRDQSHLFEWLAKDRSGRLFWVE 353

Query: 543 III--KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS--HKSDFLARVSHEIRT 598
           + +    +         + DIS  K  + +    ++   + +         + ++HEI  
Sbjct: 354 VNMKGAVIGGEYKVLAVVRDISARKAAEEENRIMQERLLQANKMAAIGTLASGIAHEINN 413

Query: 599 PLTAIIGFSEVIKN---------QRFGPLGNPRYI-------------EYANYIDRSGNL 636
           P   I+  ++ + +          R+       ++             +    +      
Sbjct: 414 PNNYILSNAQFLSDIWPEINRVLTRYAEENGEFFLGKLGYGEAAAMIPKMLTGLTEGAYR 473

Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696
           +  IV  L D ++ E  +++   +PV +++ +  A+S++     +       S    +P 
Sbjct: 474 IKGIVTGLKDFARQEKTRLD---KPVDINKVIEAALSMLHNKIKQHTDNFSCSLDKALPP 530

Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTS-NEEVILRVRDTGVGMTNYELE 754
           +    R ++Q+ +N+  NA+   PS  + + I T+++   E++ +RV D G+GMT    +
Sbjct: 531 VRGRFRQLEQVIVNLTMNALESLPSRDRAVSIQTSYSQYLEQITIRVEDQGIGMTEEVQK 590

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
               PF      +     GTGLGL +   +V  + G     S+P KGT+  +  P
Sbjct: 591 AIFDPFFTTKLDR----GGTGLGLSINFTIVKEHNGIIECDSSPGKGTVFYVRIP 641



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/273 (12%), Positives = 82/273 (30%), Gaps = 18/273 (6%)

Query: 320 NLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
            L    +   P    V      + Y+N                         +      N
Sbjct: 14  QLMHSILQAIPDLISVVDTDFKIVYSN-----WRGGHEYAAPNRRKQNRHCYEVYYPDLN 68

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
               P  L +   T ++  A     +        +    F   +     +          
Sbjct: 69  GRCDPCHLVQVFETGMSIVAEKFNPR-----VGYLEIHAFPIFDASGTVVMAGEYLRNIS 123

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
           D +  +  +      L +++ A+   I  ++ +  +   N A  ++FG+ ++++L K + 
Sbjct: 124 DRKHAEDALRGANQMLEALVNASPPAILTLDLDLNLTLWNPAAERMFGWKIDEVLGKSY- 182

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL----PFSSCY 554
             +       +   +  +   + RQ++   T    ++   + + +    +      +  Y
Sbjct: 183 PIVSIELMEELKENIRRLNRGEERQSM--ETRRLHRDGHFIDVSLSTAPMLNSEGGTIGY 240

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
              M DISE KQ +  L  ++          +D
Sbjct: 241 VAIMADISERKQAQQALRESEANYRAIFDAAND 273



 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/238 (9%), Positives = 69/238 (28%), Gaps = 9/238 (3%)

Query: 98  ISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNL 157
            +    +  G    +++G     VS  L  +   +I  L + +     +T     +G   
Sbjct: 162 WNPAAERMFGWKIDEVLGKSYPIVSIELMEELKENIRRLNRGEERQSMETRRLHRDGH-- 219

Query: 158 YVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSV 217
           ++ + L+  P+ +      G+    I+         +   +  +  +  + +     + V
Sbjct: 220 FIDVSLSTAPMLNSEGGTIGY--VAIMADISERKQAQQALRESEANYRAIFDAANDATFV 277

Query: 218 EKEK-----YDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ 272
              +                +LR +  + ++ +  A        +   L+   +      
Sbjct: 278 FDVETGAMLDVNLKMCQMYGYLREEVLLLNVEQLSAGFPPYTFQDLMKLIWKTKRDQSHL 337

Query: 273 EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330
            ++   + +                  ++ L+     S     +E   +  E + +  
Sbjct: 338 FEWLAKDRSGRLFWVEVNMKGAVIGGEYKVLAVVRDISARKAAEEENRIMQERLLQAN 395



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/139 (15%), Positives = 50/139 (35%), Gaps = 11/139 (7%)

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN-TPSVM 509
              + SIL+A  D I++++ +  I+ +N      +  P      +        +      
Sbjct: 13  KQLMHSILQAIPDLISVVDTDFKIVYSNWRGGHEYAAPNRRKQNRHCYEVYYPDLNGRCD 72

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT----MHDISEWK 565
             +L ++    +    EK         ++  L I    +  +S   +     + +IS+ K
Sbjct: 73  PCHLVQVFETGMSIVAEK------FNPRVGYLEIHAFPIFDASGTVVMAGEYLRNISDRK 126

Query: 566 QEKNKLSHAKKIAEKESSH 584
             ++ L  A ++ E   + 
Sbjct: 127 HAEDALRGANQMLEALVNA 145


>gi|237711472|ref|ZP_04541953.1| two-component system sensor histidine kinase [Bacteroides sp.
           9_1_42FAA]
 gi|229454167|gb|EEO59888.1| two-component system sensor histidine kinase [Bacteroides sp.
           9_1_42FAA]
          Length = 807

 Score =  304 bits (778), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 94/519 (18%), Positives = 189/519 (36%), Gaps = 42/519 (8%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
               +     +          P    +Y   G +   N   + +   +  +D+       
Sbjct: 302 RRSESEARLEKAYLQNIYKNLPAGIELYDKDGFMTDLNEKEMEIFGLRHKEDVIGLNLFD 361

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR------ENSLAMTFIPFEKA 421
             L    L D                I  S      + +         ++++        
Sbjct: 362 NPLLPQGLKDK---------LKAGAPIDMSFNYDFDRLDGYYSTSRTGTISLISKFAPLY 412

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR---EGIILSTN 478
           +     +    I  ++ +T     K++        I      G A  N    +G   + N
Sbjct: 413 DALGNLINILLINIDNTETTNAYSKIQDFEEFFTLIGNYAKVGYAHFNALKCDGY--AVN 470

Query: 479 RAVSKLF---GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
                +    G P+ +I++         +   +M  +  ++L       L +      ++
Sbjct: 471 SWYRNIGEKEGTPLNEIIK--VHSHFHPDDRRMMLRFFDQVLI-REASHLRRDVRILRED 527

Query: 536 EKLLS--LRIIIKKLPFSSCY---SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
                  + ++++               +DI+E K+ + KL  A+  AE+    KS FLA
Sbjct: 528 GTYTWTRVNVMVRDFRPEDGIIDMVCVNYDITELKETERKLIAARDKAEELDRLKSAFLA 587

Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650
            +SHEIRTPL AI+GFS ++              +Y   +  +  L+L +++D+LD+SK+
Sbjct: 588 NMSHEIRTPLNAIVGFSSLLTETE----DMKDRKQYMAIVQENTELLLQLISDILDLSKM 643

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710
           ESG          ++    E I  +++      + +          + AD   + Q+  N
Sbjct: 644 ESGAFEFVKSDTDVNLLCGEIIRSLRMKVPA-GVELVFEKCLPECHVWADKNRLNQVISN 702

Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
            ++NA+ FT SG  I +     ++  +   VRD G+G+   +++     F ++ +     
Sbjct: 703 FINNALKFTFSGS-ITLGYYRQTDGYLRFYVRDIGMGIPRNKIKTVFDRFVKLNSFVH-- 759

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             GTGLGL + K++V+   G   + S   +G+     +P
Sbjct: 760 --GTGLGLSICKSLVEQMGGTIGVESEEGEGSCFWFTYP 796



 Score = 43.1 bits (100), Expect = 0.19,   Method: Composition-based stats.
 Identities = 24/232 (10%), Positives = 62/232 (26%), Gaps = 61/232 (26%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           K++    +L  ++     G   ++ +  +   +  V+ L G     I  K F   + +N 
Sbjct: 3   KIQENDARLQQLVSMARIGWWEVDFDEGVYYCSEFVADLLGIEGNKISAKDFANLICENY 62

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
              +                           +++ +   +  +            + E +
Sbjct: 63  RERILEEFRSF--------------------RMMEIYEQVFPIHSKYGMMWVSTKVGEKR 102

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
             K                                  ++G  + I  QR          +
Sbjct: 103 ITKEGHVR-----------------------------VMGMLQCISRQRMN-----MQEQ 128

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
             + ++   + +  I   LLD   + S  + L      +++ + E +   Q 
Sbjct: 129 TVDRLNSLLSRLNGISKSLLDF--LHSDDITLV-----INKILKEVLRQFQA 173



 Score = 41.9 bits (97), Expect = 0.48,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 28/56 (50%)

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
           ++ R ++ +  +E   L +I +    GI + +++G +   N    ++FG   ++ +
Sbjct: 299 MELRRSESEARLEKAYLQNIYKNLPAGIELYDKDGFMTDLNEKEMEIFGLRHKEDV 354


>gi|229102180|ref|ZP_04232890.1| hypothetical protein bcere0019_13420 [Bacillus cereus Rock3-28]
 gi|228681250|gb|EEL35417.1| hypothetical protein bcere0019_13420 [Bacillus cereus Rock3-28]
          Length = 591

 Score =  304 bits (778), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 82/371 (22%), Positives = 156/371 (42%), Gaps = 39/371 (10%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            ++ E  QL SIL + +DG+  +N+EG ++  N           E+       + L +  
Sbjct: 249 ALQQEKEQLASILSSMADGVITLNQEGEVVVINPPAENFLQVWQEEK-----EIELSKKL 303

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
           PS +      ++  + +Q +E        +   + L   +            + D++E +
Sbjct: 304 PSELVELFHRVVESEQQQVVEINLQ----KGNYVVLMTPLYNQTKIRGAVAVLRDMTEER 359

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + +                + DF+A VSHE+RTP+  + G+SE I +            E
Sbjct: 360 RLE--------------KMRQDFIANVSHELRTPMVMLQGYSEAILDDIVQT--KEEINE 403

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           +   I      +  +VN+LLD++++ESG + LH   V +   V +     Q  A +K + 
Sbjct: 404 FVQIIYDESVRLGKLVNELLDLARMESGHVELHIGEVDIHPFVEKIGRKFQGIAKDKEVE 463

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +   F + I +   D   ++Q+  N++ NAI  T +GG + +   HT N  +   V+D+G
Sbjct: 464 LTVDFQSPIEQYPFDADRMEQVLTNLIDNAIRHTNAGGHVAL-VIHTENNGLTFEVQDSG 522

Query: 746 VGMTNYELEKAMKPFGQIPNSQQI-------RGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           VG+   ++      F +   ++          G        +AK +V  + GK  + S  
Sbjct: 523 VGIPEEDIPFLFDRFYKADKARTRGKKGGTGLGL------AIAKNIVQGHDGKISVSSVV 576

Query: 799 AKGTLIEIIFP 809
            +GT+  +  P
Sbjct: 577 GEGTIFSVYLP 587


>gi|66813420|ref|XP_640889.1| histidine kinase [Dictyostelium discoideum AX4]
 gi|74855522|sp|Q54U87|DHKA_DICDI RecName: Full=Hybrid signal transduction histidine kinase A
 gi|60468777|gb|EAL66777.1| histidine kinase [Dictyostelium discoideum AX4]
          Length = 2150

 Score =  304 bits (778), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 90/346 (26%), Positives = 155/346 (44%), Gaps = 26/346 (7%)

Query: 492  ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
               K     +  +        + + +       +E       K    L + +  K +   
Sbjct: 1289 WNMKFLAELIHPDDKQKFISEIKKTI-TRETSIMEIECRMRKKYGGYLYIIMRGKVVSNE 1347

Query: 552  S-------CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
            +         + T+ D++  K  +  L   K+ AE+ +  KS F+A VSHE+RTPL+ +I
Sbjct: 1348 TSFKDNSLRMAGTLRDMTSRKDMQR-LILEKEAAEEANKAKSAFVATVSHEVRTPLSGVI 1406

Query: 605  GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
            G S+++         +    +Y   I +S   +L I+ND+LD SK+ES ++ +   P S+
Sbjct: 1407 GVSDLLLETNL----SEEQRDYVQTIQKSSQALLTIINDILDYSKLESRQLKMETLPFSI 1462

Query: 665  DEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG 723
             E     I ++ + AN+  + I      N+PRI+  D   ++Q+ LN+LSNAI FT  G 
Sbjct: 1463 IETCQAVIHMLSVAAND-DVDILLRVPPNVPRIIFGDAMRMRQVLLNLLSNAIKFTSRGH 1521

Query: 724  QII-IST--------THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
             +  IS         T      + + + DTG+G+     +   +PF Q  NS   +  GT
Sbjct: 1522 VLTDISVDDSIPPTNTEEEIIHLCITIEDTGIGIPQSLFDSIFEPFSQADNSTTRKYGGT 1581

Query: 775  GLGLPLAKAMVDA-NMGKFYIFSTPAKGTLIEIIFP-LYDTSHPHD 818
            GLGL + K +++    G   + S   +G+  + I P L   + P D
Sbjct: 1582 GLGLSITKRLIEEVMGGTIQVSSIVGQGSKFKCIIPFLLPNTSPSD 1627


>gi|316931525|ref|YP_004106507.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           DX-1]
 gi|315599239|gb|ADU41774.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           DX-1]
          Length = 1071

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 102/688 (14%), Positives = 209/688 (30%), Gaps = 66/688 (9%)

Query: 170 SRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK---GHSSVEKEKYDIFS 226
            R+REF    G  +   +R+ +D   L +RL           +      +          
Sbjct: 243 DRSREF----GLDLGRRSRIQDDFPGLAERLVAGAEPALVTDRNGERFGAGWDWAQLPQG 298

Query: 227 QQSPPPHLRMKNKVSSLTEYYAHKDDV------------LKTEKYPLLTSEESSLPEQED 274
            +     LR  + ++S+     +   V                   L           E 
Sbjct: 299 PRIAVVELRPYSSLTSVKTAVRNSTIVGGTVAVLVAMLMAIPLARSLTRPLVRITNSIEA 358

Query: 275 FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL-----TPETVDKC 329
           F +  +    K      +   +       S     + +   +  E          T+D  
Sbjct: 359 FASNGVPVEVKSGGGHEIDVLAAAFTRMASESQRKAAALAREVEERSRIADVLQNTIDNM 418

Query: 330 PIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388
             P  V    G +   NP+   +    S   +          DA          P++   
Sbjct: 419 VDPVLVADARGMVILTNPAAREIFGQLSGVGVLNTTRSFDRFDADGNPMPQDQSPLLRAY 478

Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
              T +     +         S  +        ++  E      +  +   T+  +  + 
Sbjct: 479 RGETIVNFEFSVRP--NGSGLSSHLIANGRPLRSETGEIQGAVMVYHDITKTKKAEDALR 536

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
                  +I++   D    ++ +G I   +     L G+   + L K     +     S 
Sbjct: 537 RSQQMARAIIDTALDAFVQLDVQGRITDWSPHAEALLGWSRAEALGKDLGELVLAPDRSS 596

Query: 509 -----MNHYLTEILSL-DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS--LTMHD 560
                   ++  I     +            ++  ++SL + +  LP    +     M D
Sbjct: 597 EIKTGYRRFIDAIEHDMGVIHGHRIEVEALRRDGSMISLEVSMAALPVEGRFVVNAFMRD 656

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           ++E    + +L  ++K+              ++H+    LT I G  ++I +   G    
Sbjct: 657 LTEKIAFEEQLRQSQKM-----ESIGQLTGGIAHDFNNMLTVITGTIDIISD---GVADQ 708

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
           P     A  I  + +   ++   LL  ++    K  L  +   ++  ++   SL++    
Sbjct: 709 PHLAAIAKLISEAADRGSELTRLLLAFAR----KQPLRPDETDVNALLAGLQSLLRPTL- 763

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT---------- 730
            + I + T  A +   I  D   ++   +N+  NA    P GG++ I +           
Sbjct: 764 GEPIEVETMLAPDTWPIYVDRGQLESALVNLAVNARDAMPKGGKLTIESCNVVVDSDLGK 823

Query: 731 ----HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
                  ++ V++ + DTG G+      K   PF          G+GTGLGL +    + 
Sbjct: 824 RLGDLAPDDYVMIAIADTGSGIPESIRSKVFDPFFTTK----EVGKGTGLGLSMVYGFIK 879

Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
            + G   + S   +GT   +  P     
Sbjct: 880 QSGGHITLDSEEGQGTTFRLYLPRARAE 907


>gi|312880886|ref|ZP_07740686.1| multi-sensor hybrid histidine kinase [Aminomonas paucivorans DSM
           12260]
 gi|310784177|gb|EFQ24575.1| multi-sensor hybrid histidine kinase [Aminomonas paucivorans DSM
           12260]
          Length = 868

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 116/619 (18%), Positives = 205/619 (33%), Gaps = 59/619 (9%)

Query: 220 EKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTIN 279
               +F  Q P P L ++   + L    A +   +       L                +
Sbjct: 9   PGLTLFVPQRPLPLLVLRQGRTVLCNEAAERFWEVPPGGLCGLPLPPELATPPAVPSVSS 68

Query: 280 LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY---------FDEGENLTPETVDKCP 330
             +          +              H  L                 + +P  +D   
Sbjct: 69  AWRRLLPSSPRDSETTGFRYALPDGQGTHVLLLVRRSCCPSGSPIPPERSTSPPLLDLVG 128

Query: 331 IPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIAG----------GLSTLLDAPKLSDNN 379
            P  +    G +  AN           ++ +              G +  L    L + +
Sbjct: 129 NPLLLLGLDGTILGANRPACKRLGI-PLEALRRRSLYDVTPLPNRGQTAALHLRALLEGS 187

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
           ++   +L   D        +L    W     L +       +        +   +     
Sbjct: 188 SLGNGILATQDGFPFPVPMQLFLGFWEGCPLLFLGGRDPFCSLSSESPGDRRRRQRTLRA 247

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
                                  +    ++ +G     N A   L G   + +  + F  
Sbjct: 248 LLGAF-----------------PEPAFFLDVQGFFRDCNGAFEALTGLSRDQMTGRLFAD 290

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE-KLLSLRIIIKKLPFSSCYSLTM 558
                        L  +  LD  ++       S     +   LR               +
Sbjct: 291 L-----------PLDSLSRLDPLESRTLSLDFSGPSGTRQFLLRRSPCNDGKEEGLLGIL 339

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            D++E  + +  L  A+K AE+    KS FLA+VSHEIR PL+ ++G SE+      G  
Sbjct: 340 FDVTERARGEAILREARKAAEEADQAKSAFLAQVSHEIRNPLSTLLGLSEL----CLGTP 395

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
             PR   +   I ++   +L I ND+LD+S++E+GK+ L   P SL + + +A+  V   
Sbjct: 396 LQPRQRHWIQSIHQASTHMLRIANDVLDLSRVEAGKLELQQVPYSLPQLLRDALKAVLPQ 455

Query: 679 ANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-E 736
              K + +       +P  +L D   ++QI +N+L+NA+ F   G ++ +          
Sbjct: 456 GEAKGLALALREEPGLPERLLGDPGRIQQILVNLLTNAVKFCDRG-RVELRARKDPQGPW 514

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           + L V DTG G+   +L +  +PF Q   S     +G GLGLP+A  +  +  G     S
Sbjct: 515 LELAVEDTGQGIEPEDLRRVFQPFWQASPSTS--AQGMGLGLPIALQLTRSMGGNIEASS 572

Query: 797 TPAKGTLIEIIFPLYDTSH 815
            P  GT   +  PL +   
Sbjct: 573 LPGSGTTFLVRLPLEEAEA 591



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 35/362 (9%), Positives = 82/362 (22%), Gaps = 35/362 (9%)

Query: 52  SNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAF 111
             F   + ES  +          +    P    F   +D  G+ ++ +       G    
Sbjct: 225 DPFCSLSSESPGDRRRRQRTLRALLGAFPEPAFF---LDVQGFFRDCNGAFEALTGLSRD 281

Query: 112 KMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSR 171
           +M G    D+       P + +  L    +    +T      G +      L   P    
Sbjct: 282 QMTGRLFADL-------PLDSLSRL----DPLESRTLSLDFSGPSGTRQFLLRRSPCND- 329

Query: 172 NREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231
             +  G  G  I+          A+ +   K      + K    +           ++P 
Sbjct: 330 -GKEEGLLG--ILFDVTERARGEAILREARKAAEEADQAKSAFLAQVSH-----EIRNPL 381

Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291
             L   +++   T     +   +++           +    +           ++  +  
Sbjct: 382 STLLGLSELCLGTPLQPRQRHWIQSIHQASTHMLRIANDVLDLSRVEAGKLELQQVPYSL 441

Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV-----------DKCPIPFFVYSHGN 340
            Q         L       L+    E   L    +           +           G 
Sbjct: 442 PQLLRDALKAVLPQGEAKGLALALREEPGLPERLLGDPGRIQQILVNLLTNAVKFCDRGR 501

Query: 341 LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400
           +            +  +   +   G+                P    +     +  + +L
Sbjct: 502 VELRARKDPQ-GPWLELAVEDTGQGIEPEDLRRVFQPFWQASPSTSAQGMGLGLPIALQL 560

Query: 401 HT 402
             
Sbjct: 561 TR 562


>gi|197335684|ref|YP_002156922.1| aerobic respiration control sensor protein ArcB [Vibrio fischeri
           MJ11]
 gi|197317174|gb|ACH66621.1| aerobic respiration control sensor protein ArcB [Vibrio fischeri
           MJ11]
          Length = 788

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 87/399 (21%), Positives = 168/399 (42%), Gaps = 19/399 (4%)

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
               +E E       + ++  +   L S L+ + D I   N  G+    N+A+ +L G  
Sbjct: 132 AMEDLENEVFQREKAQLELAEQTALLRSYLDTSPDIIYYRNDLGLFSGCNKAMEQLTGKL 191

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            ++++        +    + +     ++L  +   T E+        +    L  I    
Sbjct: 192 EKELIGLSPKDVYDAEVAAKVIDTDRQVLQENQALTYEQWLDYPDGRKACFELSKIPFYS 251

Query: 549 PFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
                        +I+E K+ ++ L       +K S  K+ F++ +SHE+RTPL  I+G 
Sbjct: 252 KDGRRLGLVGFGRNITERKEYEDAL-------QKASRDKTTFISTISHELRTPLNGIVGL 304

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
           S ++ + R     +     Y   I+ S   + +I ND++D+ K +  K+ L  +P+    
Sbjct: 305 SRMLLDSRL----DDEQHNYMRTINVSAITLGNIFNDIIDMDKFDRRKLELFPKPLDFIS 360

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI 725
            V+E  ++  L A +K +        ++P  I  D   ++Q+  N++ NA  FT  GG +
Sbjct: 361 FVTEMENISGLMAEQKGLRFDLERLTDLPPHISVDSTRLRQVLWNLVGNATKFTKEGGVV 420

Query: 726 -IISTT-HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGEGTGLGLPLAK 782
             +S   H  + E+   + DTG+G+   ELE     + Q+   +      GTG+GL ++K
Sbjct: 421 MSVSADIHQDSAEITFEIEDTGIGIPEEELENVFAMYYQVKQGKDNLHAVGTGIGLAVSK 480

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIF--PLYDTSHPHDC 819
            +++   G   + S    G+   +    PL D     + 
Sbjct: 481 ELINLMGGDITVTSEVDFGSTFMVTINVPLVDHVEEEEA 519



 Score = 45.8 bits (107), Expect = 0.032,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 42/132 (31%), Gaps = 6/132 (4%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYG 145
           +  D  G     ++ + +  G    ++IG+   DV D        +    +L+       
Sbjct: 170 YRNDL-GLFSGCNKAMEQLTGKLEKELIGLSPKDVYDAEVAAKVIDTDRQVLQENQALTY 228

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +  L   +G       +L+ +P YS++    G  GFG         +     ++  +  +
Sbjct: 229 EQWLDYPDGRKACF--ELSKIPFYSKDGRRLGLVGFG--RNITERKEYEDALQKASRDKT 284

Query: 206 HLHEIKKGHSSV 217
                       
Sbjct: 285 TFISTISHELRT 296


>gi|331005922|ref|ZP_08329270.1| Response regulator receiver protein [gamma proteobacterium
           IMCC1989]
 gi|330420278|gb|EGG94596.1| Response regulator receiver protein [gamma proteobacterium
           IMCC1989]
          Length = 701

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 106/540 (19%), Positives = 210/540 (38%), Gaps = 47/540 (8%)

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY-ANPSFLLLTKYKSVDDIEIAGGLST 368
                  +        +D     F+ +   +  Y    SF     Y ++++         
Sbjct: 13  RSPEVLQQALARYRRVLDGSGYAFWEWGLHDNSYSCGGSFWSKLGYMTIEEAVTCVENVQ 72

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
               P      +   +   R +          + I+                 ++     
Sbjct: 73  EYVHPDDFKMVSEVVLNHLRFNTPIDMV----YRIKAKDGRYWWTQACASSTRDENDRVT 128

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII-----NREGIILSTNRAVSK 483
             +G+  +    +  ++ + +   +   IL A++DGI        N +G+   T+ +  +
Sbjct: 129 YLSGVNFDLSHLKDTEKALRLSEARHERILAASNDGIWEWSIGDNNEDGLF-HTSHSCWQ 187

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ-----TLEKITLGSTKEEKL 538
             GY  E++   P    L      +    L        R        +        E ++
Sbjct: 188 HLGYTEEEVDSLPENERLSIWRSHIHPDDLLNAQRAMKRHFFLKDPFDVEYRMFNHEGRI 247

Query: 539 LSLRIIIKKLPFSSCYSLTM----HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
             +R   + +   +  ++ M     DI+  K+ + ++  AK  AEK ++ KS FL+ +SH
Sbjct: 248 FWMRSRGQAIFNGAGRAILMSGINIDITAVKEAEKRVRKAKNEAEKANNAKSTFLSSMSH 307

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           E+RTPL AI+GFS++  N    P       E A  I  +G  +L ++ND+LD++++E+GK
Sbjct: 308 ELRTPLNAIMGFSQLAVNNSSLPSS---QRESAKQIYSAGEHLLRLINDVLDLAQVEAGK 364

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT-SFANNIPRILADLRSVKQIALNILS 713
           + L  EPV     + +  + V   A E+ I +       +   + AD   +KQ  LNI++
Sbjct: 365 ITLMLEPVLPKRIIQDCFAFVSPLAVERGINLHFIDSDADTICVYADSMRLKQCLLNIIN 424

Query: 714 NAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
           NA+ +    G + +S     N  V + V DTG G+++ + ++  +PF ++  ++    EG
Sbjct: 425 NAVKYNTDNGSVFVSLKQKKN-SVCIIVEDTGSGISSEKQKQLFQPFNRL-GAEHSAVEG 482

Query: 774 TGLGLPLAKAMVDANMGKFY---------------------IFSTPAKGTLIEIIFPLYD 812
           +G+GL + K +V+   G                        + +    G+   I  P+ +
Sbjct: 483 SGIGLVVTKELVEKMQGTLSYHDAVYNLNDMKGVAGKNDGVVKNELQSGSGFTIELPVAN 542


>gi|91790114|ref|YP_551066.1| PAS/PAC sensor signal transduction histidine kinase [Polaromonas
           sp. JS666]
 gi|91699339|gb|ABE46168.1| PAS/PAC sensor signal transduction histidine kinase [Polaromonas
           sp. JS666]
          Length = 779

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 93/775 (12%), Positives = 213/775 (27%), Gaps = 82/775 (10%)

Query: 79  IPRTVRF--------TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN 130
               +R          W + A G     +       G    + +      +         
Sbjct: 34  GDTPLRLLADAIPQIVWMMRADGRYTYFNRRWFDYCGLSLEESLDCGWPGLVHPDDGPRV 93

Query: 131 NHI-GDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRV 189
             +     K   T   +  L   +G  +Y  +   A+  Y            G +     
Sbjct: 94  AELWAQAFKSGETCEVEYRLRRADG--VYRWMLGRAVVQYDAAG--LTAHWLGTLTDIDD 149

Query: 190 DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS--------PPPHLRMKNKVS 241
                   ++          + +      +      +            P +     +  
Sbjct: 150 LKQAAVSLEKDLSMNRIAGRVARLGGWTIELPDRTLTWSDENCLIHDVAPGYQPTLEEGI 209

Query: 242 SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301
           S          +   +         +         T    +   +     +++ + +   
Sbjct: 210 SYFLPEHRPIVIRYVQD---CAEHGTPYEFVLPKLTAKGRRIWVRSIGEAVRDATGKIIR 266

Query: 302 YLSHRNHPSLSAYFDEGENLTPE----TVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKS 356
                   S     +            T++     FF +       + N     + K + 
Sbjct: 267 IQGAFQDISEQKEAEARTLALEAQLLTTLESITDGFFLIDREWKFTFVNGQAERMLKRRR 326

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
            D +            P+       +   L    +      A    +Q          F 
Sbjct: 327 EDLMGHTLWQEL----PEAVGARIEREYRLAAQAQHTTRFEAFHQPLQ------TWFAFH 376

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII------NR 470
            +                 +    R  + ++ +    L + +   +D + I       + 
Sbjct: 377 VYPTEAGLA------VYFQDITQRRAEQAQLRL----LETAVSRLNDMVVITEAEAFSDA 426

Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530
              I+  N A  +  GY  E+ +     +     T       +   +     Q +    +
Sbjct: 427 GPRIVFVNDAFERHTGYSREEAVGHTSALLWGPKTQQAELDRIRAAMK--KWQAVRAEIV 484

Query: 531 GSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQ-----------EKNKLSHAK 575
             TK  + L L   +  +   S     +     DI+E +Q            + ++    
Sbjct: 485 VYTKAGQELWLETEVAPIADESGRFTHWVAVERDITERRQQQEEILSLNGELEERVLLRT 544

Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
                 +     F   VSH++R+PL  I GFS+++       + + +   Y + I     
Sbjct: 545 AQLAAANKEMESFAYSVSHDLRSPLNTIHGFSQLLAKAEAENISD-KGKHYLDRIGVGVK 603

Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695
            + +++  LL ++++   +  +  E V L           +    +++  +         
Sbjct: 604 EMGELIEGLLTLAQL--SREQIKSEHVDLSAVARRIEQEHREREPQRQAQVLIQ---EGL 658

Query: 696 RILADLRSVKQIALNILSNAIHFTPSGG--QIIISTTHTSNEEVILRVRDTGVGMTNYEL 753
            +  D R +  +  N+L+NA  FT      +I +     S+ + +  V+D GVG      
Sbjct: 659 CVQGDPRLLSAVLQNLLANAWKFTSRQSLTRIEVGCERGSDGDTVFFVKDNGVGFDMAFS 718

Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            K    F ++ +       GTG+GL   K ++D + G+ +      +G +     
Sbjct: 719 HKLFGTFERLHSPGD--FAGTGIGLATVKRVIDRHGGRVWAEGKLNEGAMFCFTL 771


>gi|78062940|ref|YP_372848.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. 383]
 gi|77970825|gb|ABB12204.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. 383]
          Length = 530

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 86/375 (22%), Positives = 172/375 (45%), Gaps = 15/375 (4%)

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
            +    + +++    +  S  +A    +     +G +   NR + K        +    +
Sbjct: 8   TNRACPETEVDDTERRFRSFADAIPHIVWTARPDGSVDYVNRRIEKYTELGFAQVEGWNW 67

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---- 553
              +  +       +    ++      +E   +    +            L  ++     
Sbjct: 68  MSTIHPDDVQTEVAHWERAIASGTEYEIEM-RIWRASDCTYRWHLERASPLKDANGNIVK 126

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
           +  T+ DI + KQ           AE+ +  KSDFL+ +SHE+R+PL AI+GF++++   
Sbjct: 127 WVGTVTDIDDRKQALA-------AAERANRAKSDFLSSMSHELRSPLNAILGFAQLMATD 179

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
              P   P      + I R+G  +L+++ND+LD++KI++G++ +  E VSLD+ + E  S
Sbjct: 180 --SPPPTPSQQASIDQILRAGWHLLELINDVLDLAKIDAGQVAISPESVSLDDVLRECDS 237

Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
           ++   A ++ I +          + AD   VKQ+ +N+LSNA+ +    G + ++ +   
Sbjct: 238 MIVTQAGQRGIRMTFPQGEAPCHVRADRTRVKQVLVNLLSNAVKYNCPSGAVDVTCSAPV 297

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
              V + V DTG G++  ++ +  +PF ++   +    EGTG+GL +AK +++   G   
Sbjct: 298 PGRVRVSVSDTGPGLSPEQVGRLFQPFNRL-GQEAGPEEGTGIGLVVAKRLMELMGGGIG 356

Query: 794 IFSTPAKGTLIEIIF 808
           + STP KG++  I  
Sbjct: 357 VDSTPGKGSVFWIEL 371



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/283 (9%), Positives = 63/283 (22%), Gaps = 11/283 (3%)

Query: 52  SNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAF 111
                 N  +   T   D+E  F            W     G +  ++  + K       
Sbjct: 3   QPLVSTN-RACPETEVDDTERRFRSFADAIP-HIVWTARPDGSVDYVNRRIEKYTELGFA 60

Query: 112 KMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYS 170
           ++ G           +     H    +     +  +  +W              A P+  
Sbjct: 61  QVEGWNWMSTIHPDDVQTEVAHWERAIASGTEYEIEMRIWRASDCTYR-WHLERASPLKD 119

Query: 171 RNREFSGFRGFGIVHVNRVDND----PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFS 226
            N      +  G V                 +      S +    +   +       + +
Sbjct: 120 ANGNIV--KWVGTVTDIDDRKQALAAAERANRAKSDFLSSMSHELRSPLNAILGFAQLMA 177

Query: 227 QQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKK 286
             SPPP    +  +  +     H  + L  +   L   +   +    +  +++       
Sbjct: 178 TDSPPPTPSQQASIDQILRAGWHLLE-LINDVLDLAKIDAGQVAISPESVSLDDVLRECD 236

Query: 287 QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
               T          +        + A     + +    +   
Sbjct: 237 SMIVTQAGQRGIRMTFPQGEAPCHVRADRTRVKQVLVNLLSNA 279


>gi|16799393|ref|NP_469661.1| hypothetical protein lin0316 [Listeria innocua Clip11262]
 gi|16412745|emb|CAC95549.1| lin0316 [Listeria innocua Clip11262]
          Length = 610

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 81/398 (20%), Positives = 169/398 (42%), Gaps = 29/398 (7%)

Query: 424 FPENMPQNGIEPEDVDTRINKRKM--EIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
             + + +       +  R+ + +   E E  +L S+L   +DG+   +R G ++  N   
Sbjct: 236 GVDEIGELADSFNTLTKRVQEAQAMTEGERRKLSSVLAYMTDGVIATDRRGKVILINTPA 295

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT-EILSLDLRQTLEKITLGSTKEEKLLS 540
            K+     E    +     L+          +  +      R TL+K  +          
Sbjct: 296 EKMLRVKHESANGRSIIDVLDIGDTYQFEDLMEVDGSLTMDRSTLDKPYVLRAN------ 349

Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
             +I ++  F++     +HDI++ ++   +              + DF++ VSHE+RTPL
Sbjct: 350 FSVIQRETGFNNGVIAVLHDITDQEKVDQE--------------RRDFVSNVSHELRTPL 395

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
           T++  + E + +  +          +          ++ +VNDLL +S+++ G+  L   
Sbjct: 396 TSMHSYLEALSDGAW--EDKEIAPRFLEVTQNETERMIRLVNDLLKLSRMDGGREQLEKS 453

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720
            V+  +  +  I   +    ++ I+ +         I  D   V Q+  NI+SNA  ++P
Sbjct: 454 FVNFTDFFNHIIDRFE-MMKKETIMFKRHIPKEPVIIEIDEDKVMQVLDNIISNANKYSP 512

Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
            GG+I        + E+ + + D G+G+ + +L      F ++  ++     GTGLGL +
Sbjct: 513 DGGRISFYLKKFED-EIEVSIADEGLGVPDEDLANVFDRFFRVDKARSREMGGTGLGLAI 571

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
           A+ +++A+ G+ +     +KGT+I+   P   +  P D
Sbjct: 572 AREVIEAHGGRIWAERNKSKGTIIKFTLP--YSDLPED 607


>gi|320177232|gb|EFW52240.1| Two-component sensor protein RcsC [Shigella dysenteriae CDC
           74-1112]
          Length = 787

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 99/495 (20%), Positives = 186/495 (37%), Gaps = 41/495 (8%)

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
             P+   +             + LT  +S    +                    + ++L 
Sbjct: 77  TLPMGVTILDENGHT-----LISLTGPESKIKGDPRWMQERSWFGY----TEGFRELVLK 127

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV---DTRINK 444
           ++      +      +    E    +              +       E         + 
Sbjct: 128 KNLPPSSLSIVYSVPVDKVLERIRMLILNAILLNVLAGAALFTLARMYERRIFIPAESDA 187

Query: 445 RKMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            ++E        I+ +   GI I+   +G+ + +N            +  ++        
Sbjct: 188 LRLEEHEQFNRKIVASAPVGICILRTADGVNILSNELAHTYLNMLTHEDRQR-------- 239

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                    LT+I+       ++      T     L +  +  +    +     + D+S 
Sbjct: 240 ---------LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSS 286

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + +  L    + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R 
Sbjct: 287 RAKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR- 344

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
                 ++ S +L+L I++D+LD SKIES ++ +     S  E ++   +        K+
Sbjct: 345 --LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQ 402

Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           + +      ++P  +  D   ++Q+  N+LSNAI FT +G  I++       + + +RVR
Sbjct: 403 LGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG-CIVLHVR-ADGDYLSIRVR 460

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTGVG+   E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+
Sbjct: 461 DTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGS 520

Query: 803 LIEIIFPLYDTSHPH 817
              +  PLY   +P 
Sbjct: 521 QFTVRIPLYGAQYPQ 535


>gi|307728423|ref|YP_003905647.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1003]
 gi|307582958|gb|ADN56356.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1003]
          Length = 1488

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 123/712 (17%), Positives = 230/712 (32%), Gaps = 47/712 (6%)

Query: 129  PNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNR 188
             +  +      +        +   +       +   A      +   +G        +  
Sbjct: 375  ADPRLAKAQHTRAYESYPLVMVGRDDEPAARSLSDFAARRVVVSSHVAGVDPLAFQRI-- 432

Query: 189  VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS------- 241
               D  A+   LD+    +   +           D+  ++     L++   V        
Sbjct: 433  -PADHVAVAPSLDEALRMVASGEADVVVENVAAVDVVLKRQYAGVLKILGTVGESDALDF 491

Query: 242  SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301
            ++    A    ++      +  +E+  +                      L         
Sbjct: 492  AVRADLAPLAGLIDRALLAMPPAEKQRIRRNWVTGNAVGTGKWSVSAVRLLPVLIGVGVA 551

Query: 302  YL-----------SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFL 349
             L             R             N     +   P P       G     N ++ 
Sbjct: 552  LLVTLRAYLLLQREVRRRKKTERELALQLNFQETMMKMVPYPLVAQDLQGRYIAVNGAYE 611

Query: 350  LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
                +     +    G +T+        N+ +   M          A   L   +   + 
Sbjct: 612  QACGHSREAVL----GRTTMEVQTWGEVNSEVLDNMRRDLLEGGDTAQVELQFERAPGDL 667

Query: 410  SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII- 468
               + +          + +   G   +  D R  + +      +L  +  +    +  + 
Sbjct: 668  RHGLFWTSIC-RGNDGQPVCSLGTMVDITDIRRAEMRARDTERRLFDVTRSLPAVVFQLR 726

Query: 469  -NREGIIL--STNRAVSKLFGYPVEDILRKPFTVF--LEQNTPSVMNHYLTEILSLDLRQ 523
               EG         A   L G        +    F  +     S +   L     L+   
Sbjct: 727  RTPEGAYSFPYIGGAPQLLLGAGQIRPAGRDHADFERICSEDRSFVIAELERSARLETPL 786

Query: 524  TLEKITLGSTKEEKLLSLRIIIKKLPFSSC---YSLTMHDISEWKQEKNKLSHAKKIAEK 580
             +E        E+ L   R  +     +     +S    D S       +L+ A+ +AE 
Sbjct: 787  LIEFRM---GPEQALKWTRAELVPRREADGSVVWSGYWVDASIEHARAEELARARDVAEA 843

Query: 581  ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
             S  K DF A +SHEIRTP+  ++G  EV++        N    E    I  S   +L I
Sbjct: 844  ASRAKDDFFAMMSHEIRTPMNGVLGLVEVLERTPL----NADQGEMLGMIHESAGALLQI 899

Query: 641  VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILA 699
            ++DLLD SKIE+G++ +  EP+ L E V  A+ L+   A+EK + +R   A ++   +  
Sbjct: 900  LDDLLDYSKIEAGRLTIEAEPIDLRELVDNAVGLLAGRAHEKGLKVRVDIAPDVAATLRG 959

Query: 700  DLRSVKQIALNILSNAIHFTPSGGQIIISTTH---TSNEEVILRVRDTGVGMTNYELEKA 756
            D   ++Q+  N+L NAI FTP G   +  +      + + + + V DTG+G+      K 
Sbjct: 960  DSVRLRQVLFNLLGNAIKFTPEGKVEVSVSVVEHTDAQQTIEMVVEDTGIGIAADVQAKL 1019

Query: 757  MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
             +PF Q  +S   R  GTGLGL + + +++   G   + S   +GT + +  
Sbjct: 1020 FEPFVQAESSTTRRFGGTGLGLTICRKLIELMNGSLTLDSELGRGTRMTVRL 1071



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/381 (10%), Positives = 94/381 (24%), Gaps = 22/381 (5%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP---NNHIGDLLKRQNTWYGK 146
           D  G    ++    +  G+    ++G    +V     ++    +N   DLL+  +T   +
Sbjct: 598 DLQGRYIAVNGAYEQACGHSREAVLGRTTMEVQTWGEVNSEVLDNMRRDLLEGGDTAQVE 657

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRG--FGIVHVNRVDNDPRALGKRLDKKF 204
                  G   +     +       + +     G    I  + R +   R   +RL    
Sbjct: 658 LQFERAPGDLRHGLFWTSIC--RGNDGQPVCSLGTMVDITDIRRAEMRARDTERRLFDVT 715

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
             L  +        +  Y        P  L    ++        H D      +      
Sbjct: 716 RSLPAVVFQLRRTPEGAYSFPYIGGAPQLLLGAGQIRP--AGRDHADFERICSEDRSFVI 773

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
            E     + +   +   +   +Q     +       E                      E
Sbjct: 774 AELERSARLETPLLIEFRMGPEQALKWTRAELVPRREADGSVVWSGYWVDASIEHARAEE 833

Query: 325 TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
                 +            A   F  +  ++    +    GL  +L+   L+ +      
Sbjct: 834 LARARDVAEAASR------AKDDFFAMMSHEIRTPMNGVLGLVEVLERTPLNADQGEMLG 887

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN- 443
           M++ S    +     L          L +   P +        +        +   ++  
Sbjct: 888 MIHESAGALLQILDDLLDYSKIEAGRLTIEAEPIDLRELVDNAVGLLAGRAHEKGLKVRV 947

Query: 444 ------KRKMEIEVMQLCSIL 458
                    +  + ++L  +L
Sbjct: 948 DIAPDVAATLRGDSVRLRQVL 968


>gi|312221030|emb|CBY00971.1| similar to sensor histidine kinase/response regulator Fos-1
           [Leptosphaeria maculans]
          Length = 689

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 100/529 (18%), Positives = 193/529 (36%), Gaps = 31/529 (5%)

Query: 293 QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLL 351
            +    S     H      S   + G+ L  + +   P+P  +     ++ + + S+ L+
Sbjct: 9   ASPQTPSSRPTPHAPTHVSSRKEEGGDGLANDLIRYTPVPTLILDASLHVRFISDSYSLV 68

Query: 352 TKYKSVDDIEIAGGLSTL-LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
           +   + D +      +            +    + L            R      +    
Sbjct: 69  SGASNNDGLVGRHAHNLFSHTDALYHLASPQNLIRLAIDTG------CRQQVKVLDAGTV 122

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV---MQLCSILEATSD-GIA 466
             +  IP  + +             +  +    + ++E  V        ++E   D  I 
Sbjct: 123 WNLRIIPIRRHDSS--LCYVQMEYHDMTEEHRRQLELEERVHANETFKILVETVKDYAIF 180

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
           +++ +G + + N       GY   +I+ + F+ F  Q           E+         E
Sbjct: 181 MLDPDGFVATWNAGAQAFKGYTKAEIIGQHFSNFYSQEDRDNGKPA-RELRDALREGRCE 239

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
                  K+       ++I  +  +     +S    D++E ++ +  L       E+ S+
Sbjct: 240 DEGWRYRKDGSRFWANVVITPIYRNDVLIGFSKVTRDLTERRKAETSLI---TAYEEASN 296

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
            KS+FL  +SHEIRTP+  ++               +P  +E    I  SG ++L ++ND
Sbjct: 297 LKSEFLQNMSHEIRTPMHGMLSA----LTLLLDTKLDPNQLELTQVIQESGQVLLQVIND 352

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLR 702
           +LD SK+ SG  ++  + +S+ + V       Q       + + +     +P     D  
Sbjct: 353 ILDYSKLASGSFSISNDVISVTDIVQSVFRAHQA-CYSPHVKLESFLDTQLPTSAEGDAL 411

Query: 703 SVKQIALNILSNAIHFTPSG-GQIIISTTHTSNEEVIL--RVRDTGVGMTNYELEKAMKP 759
             +QI  N+LSNA+ FT  G   I+       +E   +   V DTG+G+          P
Sbjct: 412 RYRQIVQNLLSNALKFTEEGYVHIVARLEKEDDEYFTILTEVVDTGIGVPASGTSTLFTP 471

Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP-AKGTLIEII 807
           F Q  NS   R +GTGLGL + K++ +   G       P  +G++    
Sbjct: 472 FTQFDNSATKRYKGTGLGLSICKSLAELMGGTIGFHPNPEGRGSVFWFT 520



 Score = 50.8 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/112 (13%), Positives = 34/112 (30%), Gaps = 9/112 (8%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID---PNNHIGDLLKRQNT 142
            + +D  G++   +       G    ++IG    +       D   P   + D L+    
Sbjct: 179 IFMLDPDGFVATWNAGAQAFKGYTKAEIIGQHFSNFYSQEDRDNGKPARELRDALREGRC 238

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR 194
              +   +  +G+  +  + +   PIY  +    GF    +           
Sbjct: 239 -EDEGWRYRKDGSRFWANVVI--TPIYRND-VLIGFSK--VTRDLTERRKAE 284


>gi|256840639|ref|ZP_05546147.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256737911|gb|EEU51237.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 524

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 100/528 (18%), Positives = 203/528 (38%), Gaps = 55/528 (10%)

Query: 318 GENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
            E        K P+   VY   G L   N +   L      D + I      L + P   
Sbjct: 11  EEMSFNALFQKLPVGIEVYDERGQLVDLNRTDENLFAISRKDIMGIN-----LFENPNFP 65

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQ---------WNRENSLAMTFIPFEKANQFPEN 427
           ++       L + +      +     IQ              +L ++        +  + 
Sbjct: 66  EDKI---ARLKQGEMVVFDCNYEFDNIQTNEYYNIDPKKEGINLRLSIKCVPLKGEAEDI 122

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA---------IINREGIILSTN 478
                +  ++ +      K+E    +L +++  +   +           I+ +  +L  N
Sbjct: 123 CGYVLMFTDETEEYQKSEKVEELFTKLKTVMRCSDSLLWEYDVKTDKMHIDLDLRVLG-N 181

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN-HYLTEILSLDLRQTLEKITLGSTKEEK 537
           ++  +          +K F   +       +      +I++ ++ +   +  L    +  
Sbjct: 182 KSRLRASNLT----TKKDFCEIVHPEDRERVLVQGFEKIVTGEIGEYSIQYRLLFEGQYV 237

Query: 538 LLSLRIIIKKLPFSSC---YSLTMHDISEWKQEKNKLSHAKKI----------AEKESSH 584
            +       K   +         + DI++    ++KL  A++           A++ +  
Sbjct: 238 WVRAYAYPYKYDEAGRPAKILYYLMDITDEIAMQDKLRWAERERQRKEYELVKAKEANRL 297

Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
           KS FLA +SHEIRTPL AI+GF+ ++   +        +  Y + ID++  L+L ++ D+
Sbjct: 298 KSMFLANMSHEIRTPLNAIVGFANILAETKEIEEEEREF--YVDIIDKNSELLLQLIEDI 355

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704
           LD SKIE+G  ++        E   E  ++  L    K +       +    + +D + V
Sbjct: 356 LDFSKIEAGTFDITKRNFDFKEICEETYAVHALKIP-KNVRFVFDRGSQPVTVFSDPKRV 414

Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764
            Q+  N L+NAI FT  G +I ++   + + E+ + V DTG+G++  +       F ++ 
Sbjct: 415 VQVISNFLTNAIKFTSEG-EIKLAYKVSKD-EIRVSVSDTGMGISEEDCRTIFDRFVKLN 472

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
             +    +GTGLGL + K +++   G+  + ST   G+      PL +
Sbjct: 473 ACK----QGTGLGLAICKNIIEKLGGRIGVESTLGVGSTFWFTLPLKE 516


>gi|215487437|ref|YP_002329868.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli O127:H6 str. E2348/69]
 gi|300983211|ref|ZP_07176488.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 45-1]
 gi|301048966|ref|ZP_07195955.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 185-1]
 gi|215265509|emb|CAS09911.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli O127:H6 str. E2348/69]
 gi|222033980|emb|CAP76721.1| Sensor kinase protein rcsC [Escherichia coli LF82]
 gi|281179310|dbj|BAI55640.1| two-component sensor kinase [Escherichia coli SE15]
 gi|300299217|gb|EFJ55602.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 185-1]
 gi|300408612|gb|EFJ92150.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 45-1]
 gi|312946840|gb|ADR27667.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli O83:H1 str. NRG 857C]
 gi|315292174|gb|EFU51526.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 153-1]
 gi|315298048|gb|EFU57317.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 16-3]
 gi|330912049|gb|EGH40559.1| two-component sensor protein RcsC [Escherichia coli AA86]
          Length = 933

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 99/495 (20%), Positives = 186/495 (37%), Gaps = 41/495 (8%)

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
             P+   +             + LT  +S    +                    + ++L 
Sbjct: 223 TLPMGVTILDENGHT-----LISLTGPESKIKGDPRWMQERSWFGY----TEGFRELVLK 273

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV---DTRINK 444
           ++      +      +    E    +              +       E         + 
Sbjct: 274 KNLPPSSLSIVYSVPVDKVLERIRMLILNAILLNVLAGAALFTLARMYERRIFIPAESDA 333

Query: 445 RKMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            ++E        I+ +   GI I+   +G+ + +N            +  ++        
Sbjct: 334 LRLEEHEQFNRKIVASAPVGICILRTADGVNILSNELAHTYLNMLTHEDRQR-------- 385

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                    LT+I+       ++      T     L +  +  +    +     + D+S 
Sbjct: 386 ---------LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSS 432

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + +  L    + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R 
Sbjct: 433 RVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR- 490

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
                 ++ S +L+L I++D+LD SKIES ++ +     S  E ++   +        K+
Sbjct: 491 --LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQ 548

Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           + +      ++P  +  D   ++Q+  N+LSNAI FT +G  I++       + + +RVR
Sbjct: 549 LGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG-CIVLHVR-ADGDYLSIRVR 606

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTGVG+   E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+
Sbjct: 607 DTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGS 666

Query: 803 LIEIIFPLYDTSHPH 817
              +  PLY   +P 
Sbjct: 667 QFTVRIPLYGAQYPQ 681


>gi|119944738|ref|YP_942418.1| sensor histidine kinase [Psychromonas ingrahamii 37]
 gi|119863342|gb|ABM02819.1| sensor histidine kinase with ATPase domain, two fused [Psychromonas
            ingrahamii 37]
          Length = 1574

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 85/245 (34%), Positives = 128/245 (52%), Gaps = 10/245 (4%)

Query: 569  NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
             +L+   +   K +  KS+FLA +SHEIRTP+ AIIG SE+  NQ   P    +  +Y +
Sbjct: 811  RRLTMMNRAIHKANMAKSEFLANMSHEIRTPMNAIIGLSELSLNQDMTP----QLRDYLS 866

Query: 629  YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
             I  SGN +L I+N +LD SKIE+GK++L     SL + +    +       EK I + T
Sbjct: 867  KIHSSGNSLLGIINGILDFSKIEAGKLDLENIEFSLLDVLDNISNTFYFTLAEKNIELIT 926

Query: 689  SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIII--STTHTSNEEVI--LRVRD 743
            S   ++P  ++ D     QI  N+++NAI FT  G QI I  S     +++V     V D
Sbjct: 927  SIDPDVPWHLVGDPLRTGQIFTNLINNAIKFTNKG-QITICASCLEKDDKQVRLLFSVAD 985

Query: 744  TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
            TG+G+    +    +PF Q   S   +  GTGLGL + K +V+   G+ +I S   KG++
Sbjct: 986  TGLGIPKDRIASLFEPFAQADGSTSRKHGGTGLGLSICKRLVEEMNGRIWIESEQGKGSV 1045

Query: 804  IEIIF 808
                 
Sbjct: 1046 FSFEL 1050


>gi|148548955|ref|YP_001269057.1| histidine kinase [Pseudomonas putida F1]
 gi|148513013|gb|ABQ79873.1| histidine kinase [Pseudomonas putida F1]
          Length = 935

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 109/618 (17%), Positives = 212/618 (34%), Gaps = 39/618 (6%)

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
               ++ G    ++    +  +       R  N +   T   A    +   +    L S 
Sbjct: 100 EEVHLQLGSQPGKRWSLWLTQRMCAYLEARRVNLLYVDTAAQAPMRWLYNDDAQASLPSP 159

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
                 +         +       G   +         +            +   ++P  
Sbjct: 160 ALLEQLRAAELRATAPRELWLADQGAQGSRLFIFLRLDARDPDSGWLGLEIDSHAVSPSL 219

Query: 326 VDKCPIPFFVYS-HGNLFYAN---PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
            D     F +++  G L + N   P+      +   ++     G   L +   +S     
Sbjct: 220 EDASAGKFMMFNADGMLVFTNTPGPALDRSLHHPVGNNFFGFAGQGLLPEYLVISKPLMS 279

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
               L  +          L  I       L    +    +      + Q   +     T 
Sbjct: 280 SDWQLVYA--------IDLSAILAGLWQQLLGALLFCVLSITLIRVLIQRFDQRLFTPTV 331

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
              R +    M    ++E     + ++ R +G ++  N    +  G              
Sbjct: 332 ERIRALVESEMFSRDVIETAPVALCVLRRSDGQVVLENHLAQQWLGQD------------ 379

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
                 +    ++ +       Q  +      + E + L L     +            D
Sbjct: 380 --PARGARSAQWIEQAFERHEGQCSDY---FESAEGRHLYLSCSPTRYKGEPVLLCAFSD 434

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           IS  KQ +  L  A++ A+  +  K+ FLA +SHEIRTPL  ++G  E++         +
Sbjct: 435 ISARKQIEAALEDARRAADTANEAKTQFLATMSHEIRTPLYGVLGTLELLSRTVL----D 490

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
            +  +Y   I+ S + +L ++ D+LD+SKIE+G++ L     S  + V E +      A 
Sbjct: 491 AQQRDYLRAIEGSSSTLLQLICDVLDVSKIEAGQLALELSEFSAPDLVREVVQGYSAAAR 550

Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE--- 736
            K + + +     +P  ++ D+  ++QI  N+LSNA+ FT  G  ++ +     + E   
Sbjct: 551 SKGLQLYSCLDPRLPEHLIGDVNRIRQILNNLLSNAVKFTDCGRVVLRARLLNRDGERSC 610

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           ++ +V DTG G+   +     +PF Q          GTGLGLP+ + +     G+  + S
Sbjct: 611 LLWQVSDTGKGIAEQDQPFIFEPFYQTEG-HSQVIPGTGLGLPICQRLTQLMNGQLRLVS 669

Query: 797 TPAKGTLIEIIFPLYDTS 814
               G+   +  PL   S
Sbjct: 670 ELGLGSSFSLTLPLEVAS 687


>gi|78223984|ref|YP_385731.1| histidine kinase [Geobacter metallireducens GS-15]
 gi|78195239|gb|ABB33006.1| amino acid-binding domain sensor histidine kinase [Geobacter
           metallireducens GS-15]
          Length = 576

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 83/245 (33%), Positives = 139/245 (56%), Gaps = 3/245 (1%)

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           ++   +L+ AK+ AE     KS FLA +SHE+RTPL +IIGF+ ++     GP+ + +  
Sbjct: 331 RERTAELAVAKERAEAADQLKSAFLATMSHELRTPLNSIIGFTGILLQGLGGPINDEQAK 390

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           +    +  S N +L +++D+LDISKIE+G++ +  EP  L E+V +    V    ++K +
Sbjct: 391 Q-LTMVRHSANHLLSLISDVLDISKIEAGQLKISPEPFQLRESVQKVTQSVAGLVDKKGL 449

Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744
            +    A+++  I++D R V+Q+ LN+LSNA+ FT  G  I +  +  S   V   V D+
Sbjct: 450 RLILEIADDVGSIVSDQRRVEQVLLNLLSNAVKFTEQG-TISVRCSRESEWYVT-SVADS 507

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G+   +LE+  KPF Q+      + EGTGLGL + K +V+   G   + S   +G+  
Sbjct: 508 GIGIKEEDLERLFKPFHQVDTGLSRKYEGTGLGLSICKRLVELMGGSITVESRQGEGSTF 567

Query: 805 EIIFP 809
             + P
Sbjct: 568 CFLLP 572


>gi|323977585|gb|EGB72671.1| RcsC Alpha-Beta-Loop [Escherichia coli TW10509]
          Length = 708

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 98/427 (22%), Positives = 172/427 (40%), Gaps = 35/427 (8%)

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
           +     L  I+      L +  I                 E        +      E  Q
Sbjct: 62  VPVDKVLERIRM-----LILNAILLNVLAGAALFTLARMYERRIFIPAESDALRLEEHEQ 116

Query: 454 L-CSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
               I+ +   GI I+   +G+ + +N            +  ++                
Sbjct: 117 FNRKIVASAPVGICILRTADGVNILSNELAHTYLNMLTHEDRQR---------------- 160

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571
            LT+I+       ++      T     L +  +  +    +     + D+S   + +  L
Sbjct: 161 -LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSSRVKMEESL 215

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
               + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R       ++
Sbjct: 216 QEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR---LVTAMN 271

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
            S +L+L I++D+LD SKIES ++ +     S  E ++   +        K++ +     
Sbjct: 272 NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFIE 331

Query: 692 NNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
            ++P  +  D   ++Q+  N+LSNAI FT +G  I++       + + +RVRDTGVG+  
Sbjct: 332 PDVPVALNGDPMRLQQVISNLLSNAIKFTDTG-CIVLHVR-ADGDYLSIRVRDTGVGIPA 389

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+   +  PL
Sbjct: 390 KEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIPL 449

Query: 811 YDTSHPH 817
           Y   +P 
Sbjct: 450 YGAQYPQ 456


>gi|218705748|ref|YP_002413267.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli UMN026]
 gi|300897715|ref|ZP_07116112.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 198-1]
 gi|218432845|emb|CAR13739.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli UMN026]
 gi|300358555|gb|EFJ74425.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 198-1]
          Length = 933

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 99/495 (20%), Positives = 186/495 (37%), Gaps = 41/495 (8%)

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
             P+   +             + LT  +S    +                    + ++L 
Sbjct: 223 TLPMGVTILDENGHT-----LISLTGPESKIKGDPRWMQERSWFGY----TEGFRELVLK 273

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV---DTRINK 444
           ++      +      +    E    +              +       E         + 
Sbjct: 274 KNLPPSSLSIVYSVPVDKVLERIRMLILNAILLNVLAGAALFTLARMYERRIFIPAESDA 333

Query: 445 RKMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            ++E        I+ +   GI I+   +G+ + +N            +  ++        
Sbjct: 334 LRLEEHEQFNRKIVASAPVGICILRTADGVNILSNELAHTYLNMLTHEDRQR-------- 385

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                    LT+I+       ++      T     L +  +  +    +     + D+S 
Sbjct: 386 ---------LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSS 432

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + +  L    + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R 
Sbjct: 433 RVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR- 490

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
                 ++ S +L+L I++D+LD SKIES ++ +     S  E ++   +        K+
Sbjct: 491 --LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQ 548

Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           + +      ++P  +  D   ++Q+  N+LSNAI FT +G  I++       + + +RVR
Sbjct: 549 LGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG-CIVLHVR-ADGDYLSIRVR 606

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTGVG+   E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+
Sbjct: 607 DTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGS 666

Query: 803 LIEIIFPLYDTSHPH 817
              +  PLY   +P 
Sbjct: 667 QFTVRIPLYGAQYPQ 681


>gi|218700687|ref|YP_002408316.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli IAI39]
 gi|218370673|emb|CAR18482.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli IAI39]
          Length = 933

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 99/495 (20%), Positives = 186/495 (37%), Gaps = 41/495 (8%)

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
             P+   +             + LT  +S    +                    + ++L 
Sbjct: 223 TLPMGVTILDENGHT-----LISLTGPESKIKGDPRWMQERSWFGY----TEGFRELVLK 273

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV---DTRINK 444
           ++      +      +    E    +              +       E         + 
Sbjct: 274 KNLPPSSLSIVYSVPVDKVLERIRMLILNAILLNVLAGAALFTLARMYERRIFIPAESDA 333

Query: 445 RKMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            ++E        I+ +   GI I+   +G+ + +N            +  ++        
Sbjct: 334 LRLEEHEQFNRKIVASAPVGICILRTADGVNILSNELAHTYLNMLTHEDRQR-------- 385

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                    LT+I+       ++      T     L +  +  +    +     + D+S 
Sbjct: 386 ---------LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSS 432

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + +  L    + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R 
Sbjct: 433 RVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR- 490

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
                 ++ S +L+L I++D+LD SKIES ++ +     S  E ++   +        K+
Sbjct: 491 --LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQ 548

Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           + +      ++P  +  D   ++Q+  N+LSNAI FT +G  I++       + + +RVR
Sbjct: 549 LGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG-CIVLHVR-ADGDYLSIRVR 606

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTGVG+   E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+
Sbjct: 607 DTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGS 666

Query: 803 LIEIIFPLYDTSHPH 817
              +  PLY   +P 
Sbjct: 667 QFTVRIPLYGAQYPQ 681


>gi|17228774|ref|NP_485322.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17130626|dbj|BAB73236.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 498

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 84/378 (22%), Positives = 158/378 (41%), Gaps = 13/378 (3%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
              +R +     +L ++L + SD +   +  G +   N A  ++ G+   D +    +  
Sbjct: 123 HRLERDIRENRDRLATLLNSISDAVIATDESGNVTFMNPAAEEITGWHQADAIGHEVSQI 182

Query: 501 LEQNTP---SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF----SSC 553
                    +V+ + +T++L       L++ T   TK+ + + +      +       + 
Sbjct: 183 FNIIDEVTENVLENPVTKVLREQKVVYLDEYTSLITKDGRRVPIGDSASPIMGLPNKING 242

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
             +   D+SE +Q +  L  A +   + +  KS F++ VSHE R PL+ I    E +   
Sbjct: 243 VVIVFWDLSERRQTEL-LEQALQKERELNHLKSLFISTVSHEFRNPLSVIQTAIE-LIEL 300

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
               L   +   Y   I  +   +  ++ D+L + K E+ K+  +   ++L E   E I 
Sbjct: 301 HGQNLTETKKNTYIRRIKGAVQSMKLLMEDVLFMGKSEAAKLECNLVLLNLKEFCQELIE 360

Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
                       I  + ++       D R +  I +N+LSNA+ ++P    I    T   
Sbjct: 361 EFTA-VETSGHEIIFTCSDETTNAFMDERLLHYIFVNLLSNAVKYSPQNETIRFDLTCDQ 419

Query: 734 NEEV-ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
            + V I +++D G+G+   +     + F +  NSQ    +GTGLGL + K  V+A+ G+ 
Sbjct: 420 TKGVAIFQIQDEGIGIPIADQSHLFESFYRASNSQS--IQGTGLGLVIVKRCVEAHKGEI 477

Query: 793 YIFSTPAKGTLIEIIFPL 810
              S    GT   I  PL
Sbjct: 478 AFSSQEGMGTTFTITLPL 495



 Score = 42.7 bits (99), Expect = 0.28,   Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 37/117 (31%), Gaps = 6/117 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH----IGDLLKRQNTWY 144
            D  G +  ++    +  G +    IG  +  + +I+     N     +  +L+ Q   Y
Sbjct: 150 TDESGNVTFMNPAAEEITGWHQADAIGHEVSQIFNIIDEVTENVLENPVTKVLREQKVVY 209

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
                  I      VPI  +A PI     + +G     +            L + L 
Sbjct: 210 LDEYTSLITKDGRRVPIGDSASPIMGLPNKINGV--VIVFWDLSERRQTELLEQALQ 264


>gi|332096152|gb|EGJ01155.1| sensor kinase protein rcsC [Shigella dysenteriae 155-74]
          Length = 933

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 99/495 (20%), Positives = 186/495 (37%), Gaps = 41/495 (8%)

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
             P+   +             + LT  +S    +                    + ++L 
Sbjct: 223 TLPMGVTILDENGHT-----LISLTGPESKIKGDPRWMQERSWFGY----TEGFRELVLK 273

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV---DTRINK 444
           ++      +      +    E    +              +       E         + 
Sbjct: 274 KNLPPSSLSIVYSVPVDKVLERIRMLILNAILLNVLAGAALFTLARMYERRIFIPAESDA 333

Query: 445 RKMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            ++E        I+ +   GI I+   +G+ + +N            +  ++        
Sbjct: 334 LRLEEHEQFNRKIVASAPVGICILRTADGVNILSNELAHTYLNMLTHEDRQR-------- 385

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                    LT+I+       ++      T     L +  +  +    +     + D+S 
Sbjct: 386 ---------LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSS 432

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + +  L    + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R 
Sbjct: 433 RVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR- 490

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
                 ++ S +L+L I++D+LD SKIES ++ +     S  E ++   +        K+
Sbjct: 491 --LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQ 548

Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           + +      ++P  +  D   ++Q+  N+LSNAI FT +G  I++       + + +RVR
Sbjct: 549 LGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG-CIVLHVR-ADGDYLSIRVR 606

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTGVG+   E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+
Sbjct: 607 DTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGS 666

Query: 803 LIEIIFPLYDTSHPH 817
              +  PLY   +P 
Sbjct: 667 QFTVRIPLYGAQYPQ 681


>gi|325917462|ref|ZP_08179671.1| multi-sensor hybrid histidine kinase [Xanthomonas vesicatoria ATCC
            35937]
 gi|325536336|gb|EGD08123.1| multi-sensor hybrid histidine kinase [Xanthomonas vesicatoria ATCC
            35937]
          Length = 1253

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 113/693 (16%), Positives = 213/693 (30%), Gaps = 68/693 (9%)

Query: 174  EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH 233
                 R +  +   +      A   RL +    L +I        + +Y           
Sbjct: 411  RLVAARCWESMQRAKAQQQLAASEARLRRLADTLPQIIFIAGPDGQPQYFNQRWYEYTGL 470

Query: 234  LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293
                ++ ++    +  +   L  + +     +  +   + +    +            ++
Sbjct: 471  DPTSHENAAWHRAHTAEGLKLSVQAWQDALVDARAYEIECELLRHDGQARWHLARALPVR 530

Query: 294  NNSKESFEYLS----HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSF 348
             +     E++       +  +      E E       +  P   ++    G   Y NP +
Sbjct: 531  GDDGCISEWIGTYTDIHDRRTFEQQLRESEIRFRALCETVPAMIWMADAQGACMYWNPRW 590

Query: 349  LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
               T       ++  G    +          A +  +  R +          + ++ +  
Sbjct: 591  YHFTGQAEDQALDQ-GWWDVIHPDDAGRVRLAFEQALERRGE------FLAEYRVRRHDG 643

Query: 409  NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS-----D 463
                               +   G   +  + +  +     +   L  I          D
Sbjct: 644  QYRWCIDTASPHFASDGRFLGHIGSLTDISERKHIEDATASDRAILSLITTGAPLPLVLD 703

Query: 464  GIAI-INREGII-LSTN-------------RAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
             IA+ +   G I L  +              +          D    P  +       + 
Sbjct: 704  AIALSVEARGEIALYCSVMVLDEVRHTLSFGSAPHFPSAYRGDFEPSPIGLDGPPCARAA 763

Query: 509  MN-HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD------- 560
                 +                + +T       +  I+             +D       
Sbjct: 764  HLGRQIICADIQADPSFSRHHAISATLGIVACCVTPILSSDGQVLGTLNIYYDRPHSPSL 823

Query: 561  ---------------ISEWKQEKNKL-------SHAKKIAEKESSHKSDFLARVSHEIRT 598
                           + E  +   KL       + A+  AE  S  K +FLA +SHE+RT
Sbjct: 824  REQAMARSASHLAGIVIERTRVDAKLALSLQAETAARGQAEHASRVKDEFLATLSHELRT 883

Query: 599  PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
            PL AI+G+S ++++Q F P            I+RS      I++DLLD+S I SGK+ L 
Sbjct: 884  PLNAILGWSRLMQSQNFAP---ENLANGLVIIERSARAQTQIIDDLLDMSAILSGKIRLQ 940

Query: 659  FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN-IPRILADLRSVKQIALNILSNAIH 717
             E   +       + L+Q  A  + I +              D   ++Q+  N+LSNA+ 
Sbjct: 941  PEHFDIAGLARSTVELMQPAALAREIALELDAPAGSELWFFGDAGRLQQVLTNLLSNALK 1000

Query: 718  FTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
            FT SGG + +         + L V+D+G+G+    L      F Q       R  G GLG
Sbjct: 1001 FTASGGNVRVGLDVED-GRLRLCVQDSGIGIAPEFLPHVFDRFRQADAGTTRRVGGLGLG 1059

Query: 778  LPLAKAMVDANMGKFYIFST-PAKGTLIEIIFP 809
            L +++ +VD + G     S    KG L  I+ P
Sbjct: 1060 LSISRQLVDLHGGSLGASSAGEGKGALFTIVLP 1092



 Score =  131 bits (329), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 48/536 (8%), Positives = 129/536 (24%), Gaps = 69/536 (12%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGKTTLWPIE 153
           ++ +++     +G     ++G  L +    +        + ++ +    + G++    ++
Sbjct: 165 IESVNQRFHALVGERP--LLGRPLVEAMPEIVDQGYLGLLDEVRRSGQPFIGESMTAHLQ 222

Query: 154 GTNL----YVPIDLAALPIYSRNREFSG--FRGFGIVHVNRVD---------NDPRALGK 198
            T         +D    P+             GF +    RV+          D      
Sbjct: 223 RTPGSALDETFVDFLYQPMRDNAGRVDAILVHGFDVTEHRRVERRDSFLLMLEDALQHVS 282

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL------RMKNKVSSLTEYYAHKDD 252
                      +   H    +  + + +      H+       M +         A    
Sbjct: 283 EPRHIIDTSVRLLGEHLRANRCAFGLAAADGSTMHVISDHVQDMPSLQGDFPMEAAQGLR 342

Query: 253 VLKTEKYPLLTSEESSLPEQE----------------------------DFHTINLNQYT 284
                  P  T++  +    +                                    +  
Sbjct: 343 DALLANRPWFTTDAMAPGAPDYVAEQYRHSGLRASLAIPLHKHGQLVAAIGVHQRAPRRW 402

Query: 285 KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFY 343
                  ++  +   +E +         A  +          D  P   F+    G   Y
Sbjct: 403 LSTEVELVRLVAARCWESMQRAKAQQQLAASE---ARLRRLADTLPQIIFIAGPDGQPQY 459

Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403
            N  +   T          A   +   +  KLS       ++  R+             +
Sbjct: 460 FNQRWYEYTGLDPTSHENAAWHRAHTAEGLKLSVQAWQDALVDARA------YEIECELL 513

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
           + + +    +                  G   +  D R  ++++    ++  ++ E    
Sbjct: 514 RHDGQARWHLA-RALPVRGDDGCISEWIGTYTDIHDRRTFEQQLRESEIRFRALCETVPA 572

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
            I + + +G  +  N       G   +  L + +   +  +    +     + L      
Sbjct: 573 MIWMADAQGACMYWNPRWYHFTGQAEDQALDQGWWDVIHPDDAGRVRLAFEQALERRGEF 632

Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHAK 575
                      + +             S         ++ DISE K  ++  +  +
Sbjct: 633 L--AEYRVRRHDGQYRWCIDTASPHFASDGRFLGHIGSLTDISERKHIEDATASDR 686



 Score = 81.2 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 56/538 (10%), Positives = 127/538 (23%), Gaps = 61/538 (11%)

Query: 81  RTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ 140
             +   W           ++    + G       G  L ++S     D    +       
Sbjct: 51  HPMLLVW---GERAHCIYNDACIVSFGPRHPAAFGQPLAELSAT---DLGADVAHTALNL 104

Query: 141 NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
           +TW     L   E       + +A  P         G   +     N V         + 
Sbjct: 105 STWSCSPIL---EAGKQVGALYVATSPAL-------GAHAW---RSNVVAPAAPPALDQS 151

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
               + L        SV +  + +  ++       ++     + + Y    D ++    P
Sbjct: 152 PAFMAVLRGPDYIIESVNQRFHALVGERPLLGRPLVEAMPEIVDQGYLGLLDEVRRSGQP 211

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
                ES     +      L++      +  +++N+      L H    +     +  ++
Sbjct: 212 F--IGESMTAHLQRTPGSALDETFVDFLYQPMRDNAGRVDAILVHGFDVTEHRRVERRDS 269

Query: 321 LTPETVDKC-----PIPFF---VYSHGNLFYANPSFLLL--------------------- 351
                 D       P       V   G    AN     L                     
Sbjct: 270 FLLMLEDALQHVSEPRHIIDTSVRLLGEHLRANRCAFGLAAADGSTMHVISDHVQDMPSL 329

Query: 352 ---TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
                 ++   +  A   +            A   V          A+ A    +  + +
Sbjct: 330 QGDFPMEAAQGLRDALLANRPWFTTDAMAPGAPDYVAEQYRHSGLRASLAI--PLHKHGQ 387

Query: 409 NSLAMTFIPFEKANQFPE----NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
              A+                          E +     ++++     +L  + +     
Sbjct: 388 LVAAIGVHQRAPRRWLSTEVELVRLVAARCWESMQRAKAQQQLAASEARLRRLADTLPQI 447

Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
           I I   +G     N+   +  G          +          +      + L       
Sbjct: 448 IFIAGPDGQPQYFNQRWYEYTGLDPTSHENAAWHRAHTAEGLKLSVQAWQDALVDARAYE 507

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
           +E   L    + +    R +  +      S +  T  DI + +  + +L  ++     
Sbjct: 508 IECELLRHDGQARWHLARALPVRGDDGCISEWIGTYTDIHDRRTFEQQLRESEIRFRA 565



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/280 (6%), Positives = 53/280 (18%), Gaps = 12/280 (4%)

Query: 59  QESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRL 118
           Q + +      SE            +  +     G  +  ++   +  G           
Sbjct: 422 QRAKAQQQLAASEARLRRLADTLP-QIIFIAGPDGQPQYFNQRWYEYTGLDPTSHENAAW 480

Query: 119 CDV--SDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFS 176
                ++ L +        L+  +        L               ALP+   +   S
Sbjct: 481 HRAHTAEGLKLSVQAWQDALVDARAYEIECELLRH---DGQARWHLARALPVRGDDGCIS 537

Query: 177 GFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP--PHL 234
                G               +  + +F  L E       +   +               
Sbjct: 538 --EWIGTYTDIHDRRTFEQQLRESEIRFRALCETVPAMIWMADAQGACMYWNPRWYHFTG 595

Query: 235 RMKNKVSSL--TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL 292
           + +++       +     D       +            +      +             
Sbjct: 596 QAEDQALDQGWWDVIHPDDAGRVRLAFEQALERRGEFLAEYRVRRHDGQYRWCIDTASPH 655

Query: 293 QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP 332
             +      ++      S   + ++        +      
Sbjct: 656 FASDGRFLGHIGSLTDISERKHIEDATASDRAILSLITTG 695



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 22/166 (13%), Positives = 41/166 (24%), Gaps = 6/166 (3%)

Query: 54  FTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM 113
           +TD +          +SE  F            W  DA G     +       G    + 
Sbjct: 543 YTDIHDRRTFEQQLRESEIRFRALCETVPA-MIWMADAQGACMYWNPRWYHFTGQAEDQA 601

Query: 114 IGMRLCDVSDILHIDPNN-HIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172
           +     DV                L+R+  +  +  +   +G   Y      A P ++ +
Sbjct: 602 LDQGWWDVIHPDDAGRVRLAFEQALERRGEFLAEYRVRRHDG--QYRWCIDTASPHFASD 659

Query: 173 REFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVE 218
             F G    G +                    S +         ++
Sbjct: 660 GRFLGH--IGSLTDISERKHIEDATASDRAILSLITTGAPLPLVLD 703


>gi|298248411|ref|ZP_06972216.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297551070|gb|EFH84936.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 485

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 85/493 (17%), Positives = 173/493 (35%), Gaps = 26/493 (5%)

Query: 319 ENLTPETVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
                  ++  P   +      L  Y N  +L  T     + +            P    
Sbjct: 12  PPSGDTLIETIPQLVWTARPDGLHDYTNRRWLNYTGLT-FEQVRHDKWAQLQFIHPD-DR 69

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
                 V              RL   Q                 N+  + +   G   + 
Sbjct: 70  EGTQALVQHALDTGETYEHEDRLRNSQT--GEYRWFLVRVEPSRNEAGQIVKWVGTGTDI 127

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
            + +  +  +     +  +++++   GI + +    I+  N    ++ GY  ED+     
Sbjct: 128 DEQKRIEAALRPGQERADALMKSKIIGIFV-SEGDQIMDANDTFLRMTGYTREDLRAGRL 186

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT 557
                     +                         ++   L + +    L       + 
Sbjct: 187 NWLQMAPLEYLARTQQAHQELATQHSLTPYEKEYLCQDGSRLPVLVCGVLLQDHPLQVIN 246

Query: 558 MH-DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
              D S  K+ + +              K DF++  SHE++TPLTA+   ++ +  +R  
Sbjct: 247 FVLDNSARKELEQR--------------KDDFISMASHELKTPLTAVKIQTQ-LVRKRLE 291

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
                      + ++     +  ++ +LLD+SKI++G++    E V LDE V   I  +Q
Sbjct: 292 KHAQHEAATALSRVEGPVKQLERLIAELLDVSKIQAGRLEYIRERVDLDELVRGVIDTLQ 351

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
             +    IL+R S   ++   + D   ++Q+  N+LSNAI + P    + +  + +    
Sbjct: 352 HTSPSHTILVRGSVQTSL---IGDRDWLRQVFTNLLSNAIKYAPDAKTVEVELSASDE-V 407

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           V ++V D G+G+   + +K  + F +  + +Q    G G+GL +   +V  + G   + S
Sbjct: 408 VTIQVTDHGLGIPREQRDKIFERFYRAADLRQSAIPGLGMGLYIVAEIVKGHGGTITVDS 467

Query: 797 TPAKGTLIEIIFP 809
              KG+   + FP
Sbjct: 468 EVGKGSTFTVTFP 480



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 29/317 (9%), Positives = 78/317 (24%), Gaps = 20/317 (6%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV--SDILHIDPNNH-IGDLLKRQN 141
             W     G     +       G    ++   +   +        +     +   L    
Sbjct: 25  LVWTARPDGLHDYTNRRWLNYTGLTFEQVRHDKWAQLQFIHPDDREGTQALVQHALDTGE 84

Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
           T+  +  L   + T  Y    +   P  +   +    +  G            A  +   
Sbjct: 85  TYEHEDRLRNSQ-TGEYRWFLVRVEPSRNEAGQIV--KWVGTGTDIDEQKRIEAALRPGQ 141

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQ---SPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
           ++   L + K     V +    + +         + R   +   L        + L   +
Sbjct: 142 ERADALMKSKIIGIFVSEGDQIMDANDTFLRMTGYTREDLRAGRLNWLQMAPLEYLARTQ 201

Query: 259 YP--LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN-NSKESFEYLSHRNHPSLSAYF 315
                L ++ S  P ++++   + ++         LQ+   +     L +     L    
Sbjct: 202 QAHQELATQHSLTPYEKEYLCQDGSRLPVLVCGVLLQDHPLQVINFVLDNSARKELEQRK 261

Query: 316 DEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGG----LSTLLD 371
           D+  ++    +        +                 ++++   +    G    L  L+ 
Sbjct: 262 DDFISMASHELKTPLTAVKIQ----TQLVRKRLEKHAQHEAATALSRVEGPVKQLERLIA 317

Query: 372 APKLSDNNAIKPVMLYR 388
                       +   R
Sbjct: 318 ELLDVSKIQAGRLEYIR 334


>gi|262381248|ref|ZP_06074386.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262296425|gb|EEY84355.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 524

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 100/530 (18%), Positives = 201/530 (37%), Gaps = 59/530 (11%)

Query: 318 GENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
            E        K P+   VY   G L   N +   L      D + I      L + P   
Sbjct: 11  EEMSFNALFQKLPVGIEVYDERGQLVDLNRTDENLFAISRKDIMGIN-----LFENPNFP 65

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQ---------WNRENSLAMTFIPFEKANQFPEN 427
           ++       L + +      +     IQ              +L ++        +  + 
Sbjct: 66  EDKI---ARLKQGEMVVFDCNYEFDNIQTNEYYNIDPKKEGTNLRLSIKCVPLKGEAEDI 122

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA---------IINREGIILSTN 478
                +  ++ +      K+E    +L +++  +   +           I+ +  +L  N
Sbjct: 123 CGYVLMFTDETEEYQKSEKVEELFTKLKTVMRCSDSLLWEYDVKTDKMHIDLDLRVLG-N 181

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS-TKEEK 537
           ++  +          +K F   +       +   +     +   +  E         E +
Sbjct: 182 KSRLRASNLT----TKKDFCEIVHPEDRERVL--VQGFKRIVTGEIGEYSIQYRQLFEGQ 235

Query: 538 LLSLRIIIKKLPFSSC-----YSLTMHDISEWKQEKNKLSHAKKI----------AEKES 582
            + +R       +            + DI++    ++KL   ++           A++ +
Sbjct: 236 YVWVRAYAYPYKYDEAGRPAKILYYLMDITDEIAMQDKLRWVERERQRKEYELAKAKEAN 295

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
             KS FLA +SHEIRTPL AI+GF+ ++   +        +  Y + ID++  L+L ++ 
Sbjct: 296 RLKSMFLANMSHEIRTPLNAIVGFANILAETKEIEEEEREF--YVDIIDKNSELLLQLIE 353

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702
           D+LD SKIE+G  ++        E   E  ++  L    K +       +    + +D +
Sbjct: 354 DILDFSKIEAGTFDITKRNFDFKEICEETYAVHALKIP-KNVRFVFDRGSQPVTVFSDPK 412

Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
            V Q+  N L+NAI FT  G +I ++   + N+E+ + V DTG+G+++ +       F +
Sbjct: 413 RVVQVISNFLTNAIKFTSEG-EIKLAYKVS-NDEIRVSVSDTGMGISDDDCRTIFDRFVK 470

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
           +   +    +GTGLGL + K +++   G+  + ST   G+      PL +
Sbjct: 471 LNACK----QGTGLGLAICKNIIEKLGGRIGVESTLGVGSTFWFTLPLKE 516


>gi|289580010|ref|YP_003478476.1| PAS/PAC sensor signal transduction histidine kinase [Natrialba
           magadii ATCC 43099]
 gi|289529563|gb|ADD03914.1| PAS/PAC sensor signal transduction histidine kinase [Natrialba
           magadii ATCC 43099]
          Length = 789

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 116/786 (14%), Positives = 254/786 (32%), Gaps = 85/786 (10%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK-RQNTWY 144
            + +D    L  +++ L +  G    +++G  +  +     +   + I  L     +   
Sbjct: 20  IYRLDGDSRLVSVNDALVEITGYTREELLGEHVSVLFGGDSVSIEHEIERLRANASDQSE 79

Query: 145 GKTTLWPI-EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                    EG  +   + + AL +        G  G   V   R   +P A      + 
Sbjct: 80  LLDLAMETAEGGQIRCEMRMNALDVGD---AVQGAVGTVRVIDERKQAEPEATEATFRRL 136

Query: 204 FS-----------------HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY 246
           F                   + +     +  E+ +    +     P     +        
Sbjct: 137 FENVPGNYLIVQPGDYEIVAVSDAYLDATMTERAEILGKTLFEIFPDN-PDDPAEGAENL 195

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
               D V KT K   +      +P +E        +         + + + E    +   
Sbjct: 196 RESLDRVAKTGKADTMPVTHYPIPNRESGGD-EFEERWWNPINSPVFDTAGELDYIVHSV 254

Query: 307 NHPS-----LSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY------------------ 343
              +     L A  ++      +TVD       V     L                    
Sbjct: 255 EDITPIVKELQADGEQELLQETDTVDTQLASDVVLRGQELLRQAKQEAYKQLRESEERFR 314

Query: 344 ------------ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR 391
                        N  +  +   +  D     G   T      +   +  +         
Sbjct: 315 ALVTTTSDVVFSTNADWSEMRSLEGADFFADTGEQETSWVEKHVPPADQPRVQDAIDEAI 374

Query: 392 TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV 451
              ++    H I         +        ++  E     G   +  +    +R +E   
Sbjct: 375 RTKSSVELEHQIVREDGTVAWIVSRATPLLDENGEITQWLGAANDVTERVERERYLEDAK 434

Query: 452 MQLCSILEATSDGIAIIN--REGIILSTNRAVSKLFGYPVEDILR----KPFTVFLEQNT 505
            +L +  EA + G    +   + ++     + +K FG   +          F   +  + 
Sbjct: 435 ERLEAATEAGAVGTWEWHIPEDQMVTGA--SFAKKFGIDPDAATEGVSLDQFISAIHDDD 492

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS--LTMHDISE 563
              +   L + +        E     S  E + +  R  ++     +  +    + DI+E
Sbjct: 493 RERVKRRLEDTIESGEEYEEEYRVWDSNNELRWVVARGHVEYDDDGNPVTFPGALSDITE 552

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            KQ + +L       E+ +     F    SH+++ PL  +  + + + ++R+    +   
Sbjct: 553 RKQFEQRL-------EESNKRLEQFAYAASHDLQEPLRMVTSYLQ-LIDRRYTDELDKDG 604

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            E+  +     + + +++  LL+ S+IE+      FEP+ LD  +++    +Q+   E  
Sbjct: 605 EEFIEFAIDGADRMRNMIEGLLEYSRIETRGDP--FEPIDLDTVLADVRQDLQMCIEESG 662

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
             I    A ++PR+  D   ++Q+  N+LSNAI ++    ++ IS    +  +V++ V D
Sbjct: 663 AEIT---AESLPRVEGDPGQLRQVFQNLLSNAIEYSDDTPRVEIS-AVRNGPKVVVSVAD 718

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
            G+G+   + E+  + F  +         GTG+GL + K +++ + G  ++ S P +G  
Sbjct: 719 EGIGIDPDDGERVFEIFQSLHAQD--EYAGTGIGLAICKRIIERHGGDIWVESDPGEGAT 776

Query: 804 IEIIFP 809
                P
Sbjct: 777 FSFTLP 782



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 47/115 (40%), Gaps = 4/115 (3%)

Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
               DGI  ++ +  ++S N A+ ++ GY  E++L +  +V    ++ S+ +  +  + +
Sbjct: 14  NTIDDGIYRLDGDSRLVSVNDALVEITGYTREELLGEHVSVLFGGDSVSIEHE-IERLRA 72

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNK 570
               Q+        T E   +   + +  L           T+  I E KQ + +
Sbjct: 73  NASDQSELLDLAMETAEGGQIRCEMRMNALDVGDAVQGAVGTVRVIDERKQAEPE 127


>gi|218690381|ref|YP_002398593.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli ED1a]
 gi|300981269|ref|ZP_07175446.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 200-1]
 gi|218427945|emb|CAR08865.2| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli ED1a]
 gi|300307633|gb|EFJ62153.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 200-1]
 gi|324006600|gb|EGB75819.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 57-2]
 gi|324013107|gb|EGB82326.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 60-1]
          Length = 933

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 99/495 (20%), Positives = 186/495 (37%), Gaps = 41/495 (8%)

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
             P+   +             + LT  +S    +                    + ++L 
Sbjct: 223 TLPMGVTILDENGHT-----LISLTGPESKIKGDPRWMQERSWFGY----TEGFRELVLK 273

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV---DTRINK 444
           ++      +      +    E    +              +       E         + 
Sbjct: 274 KNLPPSSLSIVYSVPVDKVLERIRMLILNAILLNVLAGAALFTLARMYERRIFIPAESDA 333

Query: 445 RKMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            ++E        I+ +   GI I+   +G+ + +N            +  ++        
Sbjct: 334 LRLEEHEQFNRKIVASAPVGICILRTADGVNILSNELAHTYLNMLTHEDRQR-------- 385

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                    LT+I+       ++      T     L +  +  +    +     + D+S 
Sbjct: 386 ---------LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSS 432

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + +  L    + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R 
Sbjct: 433 RVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR- 490

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
                 ++ S +L+L I++D+LD SKIES ++ +     S  E ++   +        K+
Sbjct: 491 --LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQ 548

Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           + +      ++P  +  D   ++Q+  N+LSNAI FT +G  I++       + + +RVR
Sbjct: 549 LGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG-CIVLHVR-ADGDYLSIRVR 606

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTGVG+   E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+
Sbjct: 607 DTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGS 666

Query: 803 LIEIIFPLYDTSHPH 817
              +  PLY   +P 
Sbjct: 667 QFTVRIPLYGAQYPQ 681


>gi|147525|gb|AAA24503.1| capsule synthesis regulator component C [Escherichia coli]
          Length = 933

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 99/495 (20%), Positives = 186/495 (37%), Gaps = 41/495 (8%)

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
             P+   +             + LT  +S    +                    + ++L 
Sbjct: 223 TLPMGVTILDENGHT-----LISLTGPESKIKGDPRWMQERSWFGY----TEGFRELVLK 273

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV---DTRINK 444
           ++      +      +    E    +              +       E         + 
Sbjct: 274 KNLPPSSLSIVYSVPVDKVLERIRMLILNAILLNVLAGAALFTLARMYERRIFIPAESDA 333

Query: 445 RKMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            ++E        I+ +   GI I+   +G+ + +N            +  ++        
Sbjct: 334 LRLEEHEQFNRKIVASAPVGICILRTADGVNILSNELAHTYLNMLTHEDRQR-------- 385

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                    LT+I+       ++      T     L +  +  +    +     + D+S 
Sbjct: 386 ---------LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSS 432

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + +  L    + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R 
Sbjct: 433 RVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR- 490

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
                 ++ S +L+L I++D+LD SKIES ++ +     S  E ++   +        K+
Sbjct: 491 --LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQ 548

Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           + +      ++P  +  D   ++Q+  N+LSNAI FT +G  I++       + + +RVR
Sbjct: 549 LGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG-CIVLHVR-ADGDYLSIRVR 606

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTGVG+   E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+
Sbjct: 607 DTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGS 666

Query: 803 LIEIIFPLYDTSHPH 817
              +  PLY   +P 
Sbjct: 667 QFTVRIPLYGAQYPQ 681


>gi|121998422|ref|YP_001003209.1| PAS/PAC sensor hybrid histidine kinase [Halorhodospira halophila
           SL1]
 gi|121589827|gb|ABM62407.1| PAS/PAC sensor hybrid histidine kinase [Halorhodospira halophila
           SL1]
          Length = 633

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 95/491 (19%), Positives = 199/491 (40%), Gaps = 26/491 (5%)

Query: 334 FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393
            +       + +     L +      +++  GL  L                L+ +    
Sbjct: 22  MLDRSTQAVHLSTETRRLLELPPEHRMDLRTGLG-LYPPEYRPIVTRAIHTTLHHARPFQ 80

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
           +       T        L +  +     + +   +   G   +  + +  +R+      +
Sbjct: 81  LDVDIHTAT-----GKRLHVRKLGKPLMDDYGNVLGLRGALQDLTEIKTAERQARRLSQR 135

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
           L + LE+ +D   +++        NR   +      ED+L +       +   +    + 
Sbjct: 136 LETTLESITDAFFLVDPAWRFTFLNREAERQLNCQREDVLGRVAWEVFPEALGTAFEEHY 195

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK----- 568
              L+       E            +      +  P     ++   DIS+ KQ +     
Sbjct: 196 RYALAQQEPVVFEAYFA-------PVETWFEARAYPSDEGLAVYFRDISQRKQAEAEMAQ 248

Query: 569 --NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
              +L  A++ AE+ S  KS+FLA +SHE+RTPL AI GF++++         +     +
Sbjct: 249 LNEELHQARERAEQASRAKSEFLAAMSHELRTPLNAITGFAQLLHQTPPDETQDRDQ--H 306

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
              I  +G  + D++ D++D ++IE+G++ +H EP+++D     +++++   A  + + +
Sbjct: 307 LEQILSAGWHLRDLIGDVIDFAQIETGQLAVHAEPMAIDALARNSVAMITEQARRRGLTV 366

Query: 687 RTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
                    P   AD    +Q+ LN+LSNA+ +    G I ++ + T+   V + V DTG
Sbjct: 367 HCQSDPIAPPWARADPVRSRQVLLNLLSNAVKYNNPHGTITVTWS-TAGGSVQVDVADTG 425

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY-IFSTPAKGTLI 804
            G+ +   ++  +PF ++   +    EG+G+GL L++ +     G    + S+P +GT +
Sbjct: 426 SGIPHGRRDRLFEPFERL-GREAGSIEGSGIGLSLSQRLARMMSGDLQLLHSSPDRGTTM 484

Query: 805 EIIFPLYDTSH 815
            +  P Y   H
Sbjct: 485 RLTLPRYSDDH 495



 Score = 42.3 bits (98), Expect = 0.31,   Method: Composition-based stats.
 Identities = 36/349 (10%), Positives = 85/349 (24%), Gaps = 21/349 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147
           +D       ++ E  + +      ++G    +V           H    L +Q     + 
Sbjct: 150 VDPAWRFTFLNREAERQLNCQREDVLGRVAWEVFPEALGTAFEEHYRYALAQQEPVVFEA 209

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
              P+E        +  A P                           A   +L+++    
Sbjct: 210 YFAPVE-----TWFEARAYP-SDEGLAV-------YFRDISQRKQAEAEMAQLNEELHQA 256

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE-- 265
            E  +  S  + E     S +   P   +      L +    +          +L++   
Sbjct: 257 RERAEQASRAKSEFLAAMSHELRTPLNAITGFAQLLHQTPPDETQDRDQHLEQILSAGWH 316

Query: 266 -ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
               + +  DF  I   Q         +   ++ S   ++ +          + + + P 
Sbjct: 317 LRDLIGDVIDFAQIETGQLAVHAEPMAIDALARNSVAMITEQARRRGLTVHCQSDPIAPP 376

Query: 325 TVDKCPI----PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
                P+             + Y NP   +   + +           T    P    +  
Sbjct: 377 WARADPVRSRQVLLNLLSNAVKYNNPHGTITVTWSTAGGSVQVDVADTGSGIPHGRRDRL 436

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
            +P      +   I  S    ++       ++        +      M 
Sbjct: 437 FEPFERLGREAGSIEGSGIGLSLSQRLARMMSGDLQLLHSSPDRGTTMR 485


>gi|65318845|ref|ZP_00391804.1| COG0642: Signal transduction histidine kinase [Bacillus anthracis
           str. A2012]
          Length = 591

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 79/371 (21%), Positives = 154/371 (41%), Gaps = 39/371 (10%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            ++ E  QL SIL + +DG+  +N+EG ++  N           E+       + L +  
Sbjct: 249 ALQQEKEQLASILSSMADGVITLNQEGEVVVINPPAEHFLQVWQEEK-----EIELSKKL 303

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
           PS +      ++  + +Q +         +   + L   +            + D++E +
Sbjct: 304 PSELVELFHLVVESEQQQVVGINLQ----KGNYVVLMTPLYNQTKIRGAVAVLRDMTEER 359

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + +                + DF+A VSHE+RTP+  + G+SE I +            E
Sbjct: 360 RLE--------------KMRQDFIANVSHELRTPMVMLQGYSEAILDDIVQT--KEEINE 403

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           +   I      +  +VN+LLD++++ESG + LH   V +   V +     Q  A +K + 
Sbjct: 404 FVZIIYDESVRLGKLVNELLDLARMESGNVELHIGEVDIHPFVEKIGRKFQGIAKDKEVA 463

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +   F ++I +   D   ++Q+  N++ NAI  T +GG + +     +N  +I  V+D+G
Sbjct: 464 LTVDFKDSIEQYPFDADRMEQVLTNLIDNAIRHTNAGGHVTLVIDTKNNG-LIFEVQDSG 522

Query: 746 VGMTNYELEKAMKPFGQIPNSQQI-------RGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
            G+   ++      F +   ++          G        +AK +V  + GK  + S  
Sbjct: 523 AGIPEEDIPFLFDRFYKADKARTRGKKGGTGLGL------AIAKNIVQGHGGKISVSSVV 576

Query: 799 AKGTLIEIIFP 809
            +GT   +  P
Sbjct: 577 GEGTTFSVYLP 587


>gi|302392132|ref|YP_003827952.1| multi-sensor signal transduction histidine kinase [Acetohalobium
           arabaticum DSM 5501]
 gi|302204209|gb|ADL12887.1| multi-sensor signal transduction histidine kinase [Acetohalobium
           arabaticum DSM 5501]
          Length = 617

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 78/368 (21%), Positives = 156/368 (42%), Gaps = 29/368 (7%)

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
            E  +  +I+++ S+ + + + E  +   N    +LF    ++I+   F   LE      
Sbjct: 267 EEKNKSEAIVKSISNPLLVTDEENKVQLMNPKAEELFDLNEDNIVETHF---LESIDEDR 323

Query: 509 MNHYLTEILSLDLRQTL-EKITLGSTKE-----EKLLSLRIIIKKLPFSSC--YSLTMHD 560
           +   +TE L     Q       +    +          +          +       + D
Sbjct: 324 IFDLITETLDSGEEQVGKNNEVITFKPDNNDSKGHYFRINTTPVSDREGNTNLVVTLLED 383

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I+  K+                  KS+F++ VSHE RTPLT++     ++  +  G +  
Sbjct: 384 ITHLKEV--------------DQMKSEFVSMVSHEFRTPLTSMNMGINMLLEENIGEINE 429

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
               E           + ++V+DLLD+SKIESG+++L F+ V++ +    +I      A 
Sbjct: 430 -EQKELLEVAKEDCEHLNNLVDDLLDLSKIESGEIDLEFDAVAVKKIFEASIQPFMTQAE 488

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
           E+ + + T   N +  + AD   +  +  N++ NA+ +T  G +I +        ++ + 
Sbjct: 489 EQGVDLITEETNGL-EVYADFNKITWVITNLIGNALRYTGKGDKIKL-LADKKGHKMHIS 546

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V DTG G+      K  K F ++ + +     GTGLGL ++K +++A+ G+ ++ S   +
Sbjct: 547 VADTGEGIPKEYRHKIFKKFVRVGDDKDEET-GTGLGLAISKEIIEAHGGRIWVESEVGE 605

Query: 801 GTLIEIIF 808
           G++     
Sbjct: 606 GSIFTFTL 613


>gi|229590584|ref|YP_002872703.1| putative two-component system sensory histidine kinase [Pseudomonas
           fluorescens SBW25]
 gi|229362450|emb|CAY49356.1| putative two-component system, sensory histidine kinase
           [Pseudomonas fluorescens SBW25]
          Length = 464

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 110/456 (24%), Positives = 184/456 (40%), Gaps = 50/456 (10%)

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
              L  T            +        + V+ +  K  ++   +Q  +I  +       
Sbjct: 5   RPGLICTDNNAVDKPAVGTSPEPQSRAEKIVEFKRQKTLLKTGALQ-DAIFNSAYFSSIA 63

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRK-PFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
            + +G+I   N    ++ GY   D++ +       +          L+  L   +    E
Sbjct: 64  TDEKGVIQIFNVGAERMLGYAAADVVNRITPADISDPVELITRAAALSLELDTPITPGFE 123

Query: 527 -------------KITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKN 569
                               K+   LS  + +  L         Y L   D +  KQE+ 
Sbjct: 124 ALVFKASRGIEDIYELTYIRKDGSRLSAMVSVTALRNRYDTIIGYLLIGTDNTARKQEEA 183

Query: 570 KLSHAKKIAEK-------ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +    ++  E+        S  KS+FLA +SHE+RTPL A+IGFSE +K+   G + +  
Sbjct: 184 ERKGFERALEEKNLELEHASHMKSEFLATMSHELRTPLNAVIGFSEALKDGLVGEMSD-T 242

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             EY   I  SG  +L ++ND+LD+SK+E+G M L  E V L   ++ ++ +V+  A   
Sbjct: 243 QREYIGDIFTSGQHLLSLINDILDLSKVEAGMMELELEAVELAGLLANSLLIVREKAALH 302

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV----- 737
           RI ++     ++  +  DLR  KQI  N+L+NA+ F+  G  + ++      E+V     
Sbjct: 303 RIQLKLESPEDLGCLALDLRKTKQIVYNLLANAVKFSEHGSSVTLTVRQVPREQVGQIPG 362

Query: 738 ------------------ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
                              L V DTG+G+   ++ K  K F QI +S   + EGTGLGL 
Sbjct: 363 EWPVYNFALPDSPHQQFLELSVSDTGIGIAEDDMGKLFKAFSQIDSSLARKFEGTGLGLA 422

Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
           + K + D + G   + S    G       PL+    
Sbjct: 423 MVKQLTDLHGGSVAVASREGCGARFVAWLPLHRAPE 458



 Score = 39.6 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 31/254 (12%), Positives = 73/254 (28%), Gaps = 26/254 (10%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGM-RLCDVSDILHI-DPNNHIGDLLKRQNTWYGK 146
            D  G ++  +    + +G  A  ++      D+SD + +      +   L    T   +
Sbjct: 64  TDEKGVIQIFNVGAERMLGYAAADVVNRITPADISDPVELITRAAALSLELDTPITPGFE 123

Query: 147 TT---------------LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN 191
                                +G+   +   ++   + +R     G+   G  +  R   
Sbjct: 124 ALVFKASRGIEDIYELTYIRKDGS--RLSAMVSVTALRNRYDTIIGYLLIGTDNTARKQE 181

Query: 192 DPRALG--KRLDKKFSHLH---EIKKGHSSVEKEKYDIFSQQSPPPHLRMKN-KVSSLTE 245
           +    G  + L++K   L     +K    +    +              +K+  V  +++
Sbjct: 182 EAERKGFERALEEKNLELEHASHMKSEFLATMSHELRTPLNAVIGFSEALKDGLVGEMSD 241

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLP-EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
                   + T    LL+     L   + +   + L     +       +      +   
Sbjct: 242 TQREYIGDIFTSGQHLLSLINDILDLSKVEAGMMELELEAVELAGLLANSLLIVREKAAL 301

Query: 305 HRNHPSLSAYFDEG 318
           HR    L +  D G
Sbjct: 302 HRIQLKLESPEDLG 315


>gi|262194642|ref|YP_003265851.1| signal transduction histidine kinase with CheB and CheR activity
            [Haliangium ochraceum DSM 14365]
 gi|262077989|gb|ACY13958.1| signal transduction histidine kinase with CheB and CheR activity
            [Haliangium ochraceum DSM 14365]
          Length = 1759

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 116/760 (15%), Positives = 238/760 (31%), Gaps = 61/760 (8%)

Query: 96   KEISEELPKTIGNYAFKM--IGMRLCDVSDILHIDPNNHIGD----LLKRQNTWYGKTTL 149
              IS++  +  G    ++      L  + +  H D +         L++ ++  Y     
Sbjct: 878  TYISDQWAQVFGYRLDELPSYERLLPWLFEQAHPDDHGRFEQSYQNLIEGKSERYVIELR 937

Query: 150  WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
            +  +G +     ++A +  +             I        +  A  +  + +F  + +
Sbjct: 938  FRHKGGHWLWVREIAKILEHDELGRARHLLRMMI--DITDLKEAEASLRESELRFREMAD 995

Query: 210  IKKGHSSVEKEKYDIFSQQ----SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
                   V     D+              R   K           D    T ++    ++
Sbjct: 996  GLPLMVWVHNADGDLELVNQTFCEYFGVKRDVMKGGRWQILVHSDDADSYTREFYACIND 1055

Query: 266  ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD--------- 316
            +     +      +   +  + +         +   ++      +     +         
Sbjct: 1056 KRPFHAEARVKHADGTWHWIESWGRPRLGPEGQFRGFVGTSADITARREMEMALRTSRRN 1115

Query: 317  --EGENLTPETVDKCPIPFFVYSHGNLFY--ANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
              +        ++   +   V     L Y   N ++  L      D   +   ++ +   
Sbjct: 1116 ESQQRQFLETLLENAKVCVAVMEGDELRYTLVNRAYQNL----RPDVSMVGRTVAEIFPE 1171

Query: 373  PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
                  +     +L+  +             + +                          
Sbjct: 1172 AVAVGVDNDLRQVLHTGEMQVQYGYHAPVPGRLDAR----WDHQVVRLPESEGRARSVLL 1227

Query: 433  IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVED 491
            I  E  +    +  +     +L    +A   G+   +   G I S +  V  ++G   ++
Sbjct: 1228 ITWESTEHYRTQGALRESEQRLQIAKDAAGFGVYAYDIVSGGI-SWDERVRSIWGVSADE 1286

Query: 492  -ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG-STKEEKLLSLRIIIKK-- 547
             +  + F   +      V+   L                   +  + K            
Sbjct: 1287 PLSYELFLSGVHPGDRVVVEAALERACDPGGNGHYRAEYRIINRHDGKTYWASSTGFVEF 1346

Query: 548  -LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
                ++     + D++  K  K  L  ++   ++    K +FLA + HE+R PL AI   
Sbjct: 1347 IDGEAARLVGAVQDVTVEKDAKAALLASQMSLQEADRQKDEFLAMLGHELRNPLAAIRTA 1406

Query: 607  SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
            SE+++ +  G   NP +      +DR    +  +++ LLDIS+I  GK+ L  E + L +
Sbjct: 1407 SELLRRKLGG---NPEFTRMQEVLDRQTLHMAKLLDGLLDISRIIRGKIRLESELLDLRK 1463

Query: 667  AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726
             V E  S ++    ++++ IR         + AD   + QI  N+LSNA+ +TP GG I 
Sbjct: 1464 IVREVTSDLREGMTDRQLEIRADIPPEPLLVEADRVRLAQIVNNLLSNAVKYTPDGGAIH 1523

Query: 727  ISTTHT-SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR--------GEGTGLG 777
            I+ +H   +  V+L V+DTGVG+    L    + F Q   S                   
Sbjct: 1524 ITLSHDSGDGTVVLEVKDTGVGIEAELLPHVFEIFRQSKQSIDRSAGGLGLGLAL----- 1578

Query: 778  LPLAKAMVDANMGKFYIFST-PAKGTLIEIIFPLYDTSHP 816
                K +V+   G     S  P  G    + FPL     P
Sbjct: 1579 ---VKTLVERQGGSVEARSEGPGAGAEFSVKFPLSHAPSP 1615



 Score =  107 bits (268), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 23/325 (7%), Positives = 78/325 (24%), Gaps = 11/325 (3%)

Query: 274  DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF 333
            D   I       +     ++       +     N     A   +   L  E         
Sbjct: 811  DGRCITRQALPYRTENRRIEGVVVTFTDVTELSNANEELATRTQRLELAWEVARG---GV 867

Query: 334  FVYSH--GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR 391
              +        Y +  +  +  Y+  +       L  L +     D+   +       + 
Sbjct: 868  LEHRLPLDESTYISDQWAQVFGYRLDELPSYERLLPWLFEQAHPDDHGRFEQSYQNLIEG 927

Query: 392  TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV 451
                    L                   + ++         +  +  D +  +  +    
Sbjct: 928  KSERYVIELRFRHKGGHWLWVREIAKILEHDELGRARHLLRMMIDITDLKEAEASLRESE 987

Query: 452  MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
            ++   + +     + + N +G +   N+   + FG   + +    + + +  +       
Sbjct: 988  LRFREMADGLPLMVWVHNADGDLELVNQTFCEYFGVKRDVMKGGRWQILVHSDDADSYTR 1047

Query: 512  YLTEILSLDLRQTLEKITLGSTKEEKLLSLRI----IIKKLPFSSCYSLTMHDISEWKQE 567
                 ++    +           +     +       +        +  T  DI+  ++ 
Sbjct: 1048 EFYACINDK--RPFHAEARVKHADGTWHWIESWGRPRLGPEGQFRGFVGTSADITARREM 1105

Query: 568  KNKLSHAKKIAEKESSHKSDFLARV 592
            +  L  +++   ++       L   
Sbjct: 1106 EMALRTSRRNESQQRQFLETLLENA 1130



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 64/526 (12%), Positives = 147/526 (27%), Gaps = 53/526 (10%)

Query: 92   HGY--LKEISEELPKTIGNYAFK---MIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK 146
             G   +K  +    + +G         +G    ++           + D L+ ++     
Sbjct: 750  DGRLCIKRFTPAAQQQLGIDHADTGRFVGNIARELLQHDLAQDAESVLDHLRVES----- 804

Query: 147  TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
              +   +G      I   ALP  + NR   G             ++         ++   
Sbjct: 805  RVMRTTDGRC----ITRQALPYRTENRRIEGV--VVTFTDVTELSNANEELATRTQRLEL 858

Query: 207  LHEIKKG----HSSVEKEKYDIFSQQSPPPHLRMKNKV-------SSLTEYYAHKDDVLK 255
              E+ +G    H     E   I  Q +     R+               + +       +
Sbjct: 859  AWEVARGGVLEHRLPLDESTYISDQWAQVFGYRLDELPSYERLLPWLFEQAHPDDHGRFE 918

Query: 256  TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL-----SHRNHPS 310
                 L+  +      +  F     +    ++    L+++      +L        +   
Sbjct: 919  QSYQNLIEGKSERYVIELRFRHKGGHWLWVREIAKILEHDELGRARHLLRMMIDITDLKE 978

Query: 311  LSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
              A   E E    E  D  P+  +V++  G+L   N +F      K        GG   +
Sbjct: 979  AEASLRESELRFREMADGLPLMVWVHNADGDLELVNQTFCEYFGVKRDVM---KGGRWQI 1035

Query: 370  LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
            L     +D+   +      +D+    A AR   ++        +      +     +   
Sbjct: 1036 LVHSDDADS-YTREFYACINDKRPFHAEAR---VKHADGTWHWIESWGRPRLGPEGQFRG 1091

Query: 430  QNGIEPEDVDTRINKRKME-------IEVMQLCSILEATSDGIAII-NREGIILSTNRAV 481
              G   +    R  +  +         +   L ++LE     +A++   E      NRA 
Sbjct: 1092 FVGTSADITARREMEMALRTSRRNESQQRQFLETLLENAKVCVAVMEGDELRYTLVNRAY 1151

Query: 482  SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT---LEKITLGSTKEEKL 538
              L   P   ++ +       +     +++ L ++L     Q          G       
Sbjct: 1152 QNL--RPDVSMVGRTVAEIFPEAVAVGVDNDLRQVLHTGEMQVQYGYHAPVPGRLDARWD 1209

Query: 539  LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
              +  + +    +    L   + +E  + +  L  +++  +     
Sbjct: 1210 HQVVRLPESEGRARSVLLITWESTEHYRTQGALRESEQRLQIAKDA 1255



 Score = 97.8 bits (242), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 60/522 (11%), Positives = 138/522 (26%), Gaps = 36/522 (6%)

Query: 63   SNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS 122
            +  +  +SE  F        +   W  +A G L+ +++   +  G     M G R   + 
Sbjct: 979  AEASLRESELRFREMADGLPL-MVWVHNADGDLELVNQTFCEYFGVKRDVMKGGRWQILV 1037

Query: 123  DILHIDPN-NHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRG- 180
                 D         +  +  ++ +  +   +GT  +  I+    P      +F GF G 
Sbjct: 1038 HSDDADSYTREFYACINDKRPFHAEARVKHADGT--WHWIESWGRPRLGPEGQFRGFVGT 1095

Query: 181  FGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG-----HSSVEKEKYDIFSQQSPPPHLR 235
               +   R         +R + +     E          + +E ++           +LR
Sbjct: 1096 SADITARREMEMALRTSRRNESQQRQFLETLLENAKVCVAVMEGDELRYTLVNRAYQNLR 1155

Query: 236  MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLN----QYTKKQYFGT 291
                +   T      + V       L     +   + +  +   +          Q    
Sbjct: 1156 PDVSMVGRTVAEIFPEAVAVGVDNDLRQVLHTGEMQVQYGYHAPVPGRLDARWDHQVVRL 1215

Query: 292  LQNNSKESFEYL---SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANP 346
             ++  +     L       H        E E       D      + Y    G +   + 
Sbjct: 1216 PESEGRARSVLLITWESTEHYRTQGALRESEQRLQIAKDAAGFGVYAYDIVSGGIS-WDE 1274

Query: 347  SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS--DRTCIAASARLHTIQ 404
                +    + + +        L  +     +  +    L R+          A    I 
Sbjct: 1275 RVRSIWGVSADEPLS-----YELFLSGVHPGDRVVVEAALERACDPGGNGHYRAEYRIIN 1329

Query: 405  WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
             +   +   +   F +     E     G   +    +  K  +    M L        + 
Sbjct: 1330 RHDGKTYWASSTGFVEF-IDGEAARLVGAVQDVTVEKDAKAALLASQMSLQEADRQKDEF 1388

Query: 465  IAIINREGI-----ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL 519
            +A++  E       I + +  + +  G   E    +        +   +++  L     +
Sbjct: 1389 LAMLGHELRNPLAAIRTASELLRRKLGGNPEFTRMQEVLDRQTLHMAKLLDGLLDISRII 1448

Query: 520  DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDI 561
              +  LE   L   K  + ++      +   +        DI
Sbjct: 1449 RGKIRLESELLDLRKIVREVT---SDLREGMTDRQLEIRADI 1487



 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/367 (7%), Positives = 85/367 (23%), Gaps = 31/367 (8%)

Query: 217 VEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFH 276
            +  +  + +  +PP  +  ++     +         +     P         PE     
Sbjct: 522 GDLARRAVLAAVAPPTLVISEDGSVLFSHGELGPYIRIPEGDNPRFELNSVLRPEL---- 577

Query: 277 TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY 336
              +     +         +  S    + R           G ++   T +  P    V 
Sbjct: 578 ATRVRGVLHRCRREKQAQFALSSPNGDALRVRIGARLAPSLGSDVVILTFEALPEETAVT 637

Query: 337 SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA 396
                                           L++  +       + +     +      
Sbjct: 638 IAER--------------------PERPEQDVLVEQLESELQATREDLRTTVEELETSIE 677

Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
             R    +    N    +     +A           +   +   +     +E+    L +
Sbjct: 678 ELRSSNDESMSINEELQSANEELEATTEELRSLNEELTIVNAQLQEKVELVELAHDDLNN 737

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
              +T      ++    I     A  +  G    D   +       +     +      +
Sbjct: 738 FFSSTKIATVFLDGRLCIKRFTPAAQQQLGIDHAD-TGRFVGNIARELLQHDLAQDAESV 796

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHA 574
           L     ++     +  T + + ++ + +  +          +T  D++E      +L+  
Sbjct: 797 LDHLRVES----RVMRTTDGRCITRQALPYRTENRRIEGVVVTFTDVTELSNANEELATR 852

Query: 575 KKIAEKE 581
            +  E  
Sbjct: 853 TQRLELA 859


>gi|91204351|emb|CAJ72004.1| similar to two-component sensor histidine kinase [Candidatus
           Kuenenia stuttgartiensis]
          Length = 769

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 78/384 (20%), Positives = 162/384 (42%), Gaps = 27/384 (7%)

Query: 438 VDTRINKR--KMEIEVMQLCSILEATSDGIAIINREG-IILSTNRAVSKLFGYPVEDILR 494
           ++ RI +R  ++     +    +   +D I  ++ +   I+ +N+   +L GY  +++ R
Sbjct: 405 LEQRIRERTSQLRASEEKYRESINLANDAIFTLDPDMAHIVDSNKKAEELSGYTKKELSR 464

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS--LRIIIKKLPFSS 552
           +     + +       H   EI                  + +++   +   I       
Sbjct: 465 RKIWEIVPEYDRQKTKHLWREINKKGSGMLDN--LDCQHADGRIIPTSISASIIAYGKKR 522

Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
                  D++E K+ + +L   +++A        +  A V+HEI  PL  ++ F +++  
Sbjct: 523 TIQWICRDVTERKRMEMQLIQTERLA-----AVGELAAGVAHEINNPLGGLLNFVKMMSR 577

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
           +   P    +  E+   +      +  IV  L+  S+  S  M+ H     ++  V  +I
Sbjct: 578 E---PENISQNKEFLELMAEGLKRIEVIVKQLMAFSRPYSTHMDNHC----VNTVVRNSI 630

Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
             +     E+RI +     + +P I AD   + Q+ +NIL NA+     GG++ I+T H 
Sbjct: 631 RFLDHRIKEQRITLEERLFSGLPEIYADADQISQVIINILVNALDCMDDGGKLTIATGHC 690

Query: 733 SN--EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
           ++    + +++ DTG G+ +    +   PF         +  G+GLGL ++K +V+ + G
Sbjct: 691 NHLKSSIHIKITDTGPGINDDIASRIFNPFFTT------KEMGSGLGLAISKRIVEDHDG 744

Query: 791 KFYIFSTPAKGTLIEIIFPLYDTS 814
             ++ S P KGT   I  P+   +
Sbjct: 745 NIFVDSKPGKGTTFSICLPVRKAT 768


>gi|254162230|ref|YP_003045338.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli B str. REL606]
 gi|300931436|ref|ZP_07146765.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 187-1]
 gi|242377854|emb|CAQ32621.1| RcsC sensory histidine kinase [Escherichia coli BL21(DE3)]
 gi|253974131|gb|ACT39802.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli B str. REL606]
 gi|253978298|gb|ACT43968.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli BL21(DE3)]
 gi|300460806|gb|EFK24299.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 187-1]
          Length = 933

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 99/495 (20%), Positives = 186/495 (37%), Gaps = 41/495 (8%)

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
             P+   +             + LT  +S    +                    + ++L 
Sbjct: 223 TLPMGVTILDENGHT-----LISLTGPESKIKGDPRWMQERSWFGY----TEGFRELVLK 273

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV---DTRINK 444
           ++      +      +    E    +              +       E         + 
Sbjct: 274 KNLPPSSLSIVYSVPVDKVLERIRMLILNAILLNVLAGAALFTLARMYERRIFIPAESDA 333

Query: 445 RKMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            ++E        I+ +   GI I+   +G+ + +N            +  ++        
Sbjct: 334 LRLEEHEQFNRKIVASAPVGICILRTADGVNILSNELAHTYLNMLTHEDRQR-------- 385

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                    LT+I+       ++      T     L +  +  +    +     + D+S 
Sbjct: 386 ---------LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSS 432

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + +  L    + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R 
Sbjct: 433 RVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR- 490

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
                 ++ S +L+L I++D+LD SKIES ++ +     S  E ++   +        K+
Sbjct: 491 --LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQ 548

Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           + +      ++P  +  D   ++Q+  N+LSNAI FT +G  I++       + + +RVR
Sbjct: 549 LGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG-CIVLHVR-ADGDYLSIRVR 606

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTGVG+   E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+
Sbjct: 607 DTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGS 666

Query: 803 LIEIIFPLYDTSHPH 817
              +  PLY   +P 
Sbjct: 667 QFTVRIPLYGAQYPQ 681


>gi|303242815|ref|ZP_07329281.1| multi-sensor signal transduction histidine kinase [Acetivibrio
           cellulolyticus CD2]
 gi|302589626|gb|EFL59408.1| multi-sensor signal transduction histidine kinase [Acetivibrio
           cellulolyticus CD2]
          Length = 718

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 85/385 (22%), Positives = 167/385 (43%), Gaps = 14/385 (3%)

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP-VEDILR 494
           E  ++   +  +     +  S+LE   + + + +RE  +L  N+   +L G    +  L 
Sbjct: 302 EVEESIRAEELLRKSEERYRSLLELLPEAVFLHDRE-NVLFVNQLGVRLLGLENKQQGLE 360

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554
                   +         + EI+    +   E+  L S K  K +              +
Sbjct: 361 ISLFDLFGEENYHSFLLEMDEIVKNGRQVAFEQTVLNSNKCFK-VEFVTTPHIADDKHVF 419

Query: 555 SLTMHDISEWKQEKN------KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
              + D+++ K+ K       +     K   ++   K+D+   +SHE RTPL+ ++   +
Sbjct: 420 ISVIRDLAQMKKIKEMEKSVVENKRLLKEITEKHKMKTDYFTNLSHEFRTPLSIMLCTLK 479

Query: 609 VIKN----QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           ++++    +        +  +Y   +  +   +  I N+ L+I+KI+SG   L  +  ++
Sbjct: 480 IMESFCKLEENLNDQKEKMAQYIASVKTNSYRLFKIANNFLEIAKIDSGYGELKLKNYNI 539

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724
              V +    V  Y   +RI +          +  D+  ++ I LN+LSNAI FT  GGQ
Sbjct: 540 VSIVEKVTMSVWEYTRNRRISLMFDTDTEEIILACDIDKIEMIVLNLLSNAIKFTREGGQ 599

Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
           I ++      + V++ V DTG+G+   +L+   + F Q+ NS     EG G+GL L KA+
Sbjct: 600 IEVNI-FNHKQHVLISVSDTGIGIPEDKLDLIFERFKQVDNSLAKDYEGIGVGLSLVKAL 658

Query: 785 VDANMGKFYIFSTPAKGTLIEIIFP 809
           V+ + G   + S+   G+  +++ P
Sbjct: 659 VEMHGGNIEVESSLGVGSTFKVLLP 683



 Score = 41.9 bits (97), Expect = 0.40,   Method: Composition-based stats.
 Identities = 11/112 (9%), Positives = 29/112 (25%), Gaps = 3/112 (2%)

Query: 286 KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYAN 345
           +    T++     S   L             + E      ++  P   F++   N+ + N
Sbjct: 284 EFEQKTIELEMVNSQLKLEVEESIRAEELLRKSEERYRSLLELLPEAVFLHDRENVLFVN 343

Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397
              + L   ++            L         + +  +     +   +A  
Sbjct: 344 QLGVRLLGLENKQQGLEISLFD-LFGEENYH--SFLLEMDEIVKNGRQVAFE 392


>gi|217422964|ref|ZP_03454466.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 576]
 gi|217393872|gb|EEC33892.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 576]
          Length = 1014

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 126/677 (18%), Positives = 232/677 (34%), Gaps = 59/677 (8%)

Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH 233
           +F   +G+ ++H  +      A+G     +          + ++ + +  +   QSP P 
Sbjct: 111 QFDAHQGYAVLHTPQGAPAALAVGIPAPGRS---ASAFAPYLALLETQLLMGDGQSPLPD 167

Query: 234 LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293
            R++    S    Y       + +         S+                 +     + 
Sbjct: 168 DRVEGYSFSPDGTYLSLLWSREDQAPEAFIESHSASGL---IGDAMRGIRYLRDASTIVP 224

Query: 294 NNSKESFEYLSHRNHP--------SLSAYFDEGENLTPETVDKCPIPFF----------- 334
             +     +L     P         +    D    L    V   P+  F           
Sbjct: 225 LRADRRTVWLPPHPDPLTGKPMIRIVQPAIDATGKLFAIYVRSLPLDMFYSNLNDAPAGS 284

Query: 335 ----VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390
               V   GN+   + +        +   + I       L           +  M   SD
Sbjct: 285 TLTIVDRKGNVILGSSNQHGGGGGATASALGI-----RSLGDGFGGLVERYQDGMFVTSD 339

Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR------INK 444
           +        +H   W    + A+              +    +     D +         
Sbjct: 340 QLPGTDWVLVHAYSWK-TIAAALALRFSLVTGLVAGIIVMLWLFAIQFDRKGLIPNYRRA 398

Query: 445 RKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
           +++    +   +IL     G+ +++  +G +L  N A+ +L     ++ L          
Sbjct: 399 QRLLESEVLNRTILRTAPVGLGLLSAQDGSVLLQNNAMLELSARTSDEPLPIRLWEAYRH 458

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                 +               +            L   ++  +   ++    T+ DIS 
Sbjct: 459 AVGRSSDE-------DGALLQHDLAIEREGANPVYLQANVVAARYRGANVLLCTLLDISL 511

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            K+ + KL  A+  A++ +  KS FLA +SHEIRTPL AIIG  E+++        + + 
Sbjct: 512 RKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPL----SEQQ 567

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            E  + ++   N +L I+ND+LD+SK+ESG+M L   P  +   + E +      A  K 
Sbjct: 568 SERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAYAPLAESKG 627

Query: 684 ILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIST----THTSNEEVI 738
           + + +S    + R    D   ++Q+  N++ NAI FT  G  I I             + 
Sbjct: 628 LALLSSIGEGVARHYAGDPTRIRQVLSNLIGNAIKFTERG-HISIDVHRAKAARDGSAIE 686

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           + V DTG+G+    +      + Q   S   R  G+GLGLPL + +V    G   I S P
Sbjct: 687 IWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLP 746

Query: 799 AKGTLIEIIFPLYDTSH 815
             GT + +  PL +  H
Sbjct: 747 DFGTTVTVALPLREARH 763


>gi|241206973|ref|YP_002978069.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240860863|gb|ACS58530.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 861

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 132/727 (18%), Positives = 266/727 (36%), Gaps = 37/727 (5%)

Query: 107 GNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVP--IDLA 164
           GN   +++G    +       +     G  LK ++    +  +  +          ++  
Sbjct: 149 GNARPELLGQLPPETGAPQDGE-FLAFGLWLKSRSASELEKAIDRLRDEAQSFDMVVETI 207

Query: 165 ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDI 224
              I       SG R F  V      N+ RA    L  +   L        ++       
Sbjct: 208 RDEILEAQGRVSGGRAF--VRFV-ALNNLRAELAELRIERDRLMTSISAFQTMLDAIDMP 264

Query: 225 FSQQSPPPHLRMKNKVSSLTEYYAHKDDVL--------KTEKYPLLTSEESSLPEQEDFH 276
             Q+ P   L   N+              +           +  +  +     P  +   
Sbjct: 265 AWQRDPVGRLTWVNQAYGEAVEARSPQQAINEGREMLTTVARERIRATTTPESPFHDKIS 324

Query: 277 TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY 336
           T+     T       ++     +   +   +  ++ A  +       ET+D    P  ++
Sbjct: 325 TVVHGNRTFFDVV-DVRVPGGSAGIAIDVSDIEAVRAELERTLKSHAETLDHLATPVAIF 383

Query: 337 SHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIA 395
                L + N +F+ L +   +  +E     S LL+  + +     +       +     
Sbjct: 384 DGERRLQFYNQAFVALWEL-DIAFLEGRPDNSELLERLRAAKKLPDQLNWKSWKE----- 437

Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
                 ++    +    +  +P  +  +        G      +    +  +E     L 
Sbjct: 438 ---AALSVYRALDTQTDLWHLPNGQTLRVFATAHPQGGATWVFENLTEQVDLETRYNTLV 494

Query: 456 SI----LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
            +    ++  S+G+A+   +G I  +N A   L+G    +         L +      + 
Sbjct: 495 KVQGETIDHLSEGVAVFGPDGRIRLSNPAFRALWGITETEAKPGTHIRALGEACAPSYDQ 554

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLS---LRIIIKKLPFSSCYSLTMHDISEWKQEK 568
                   +L  + +          +L S   L   +  LP +    LT  ++++  + +
Sbjct: 555 PDGWKTFAELITSFDDERRSGQGTLELFSGLVLDYAVIPLPNAQ-TMLTFVNMTDSVRAE 613

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
             L+   +   K    K+DF+  VS+E+R+PLT IIGF+++++    GPL   R  EY +
Sbjct: 614 RALTEKNEALRKADELKNDFVQHVSYELRSPLTNIIGFTDLLRTPGVGPLT-ERQAEYID 672

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
           +I  S +++L +VND+LD++ +++G M L++  + L++ + +    +    +E  + +  
Sbjct: 673 HISTSSSVLLTLVNDILDLATVDAGIMRLNYADIDLNDLLDDVSMQIADRLHESGVALEI 732

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748
           +    +  I+AD + +KQI L +LSNA +F+P G  I +   H    + +  V D G G+
Sbjct: 733 TAPAYLGSIVADPQRLKQILLKLLSNAANFSPEGTSISLEC-HREGTDFVFSVGDRGPGI 791

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           +   +      F     S +    G GLGL +  + V  + G   I S P KGT +    
Sbjct: 792 SPDMIATVFDRFATGAKSGKR--GGAGLGLSIVDSFVSLHHGDVTIDSEPGKGTTVVCRI 849

Query: 809 PLYDTSH 815
           P  D  H
Sbjct: 850 PSVDVPH 856



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 42/384 (10%), Positives = 97/384 (25%), Gaps = 34/384 (8%)

Query: 87  WNIDAHGYLKEISEELPKTI-GNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
           W  D  G L  +++   + +      + I      ++ +        I      ++ ++ 
Sbjct: 266 WQRDPVGRLTWVNQAYGEAVEARSPQQAINEGREMLTTV----ARERIRATTTPESPFHD 321

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           K +         +  +D+         R   G  G  I          RA  +R  K  +
Sbjct: 322 KISTVVHGNRTFFDVVDV---------RVPGGSAGIAI--DVSDIEAVRAELERTLKSHA 370

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSP------------PPHLRMKNKVSSLTEYYAHKDDV 253
              +      ++   +  +                           +  L       D +
Sbjct: 371 ETLDHLATPVAIFDGERRLQFYNQAFVALWELDIAFLEGRPDNSELLERLRAAKKLPDQL 430

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
                     S   +L  Q D   +   Q  +       Q     ++ + +      L  
Sbjct: 431 NWKSWKEAALSVYRALDTQTDLWHLPNGQTLRVFATAHPQG--GATWVFENLTEQVDLET 488

Query: 314 YFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
            ++    +  ET+D       V+   G +  +NP+F  L      +     G     L  
Sbjct: 489 RYNTLVKVQGETIDHLSEGVAVFGPDGRIRLSNPAFRALWGITETEA--KPGTHIRALGE 546

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
                 +       +    T      R         + L + +      N        N 
Sbjct: 547 ACAPSYDQPDGWKTFAELITSFDDERRSGQGTLELFSGLVLDYAVIPLPNAQTMLTFVNM 606

Query: 433 IEPEDVDTRINKR-KMEIEVMQLC 455
            +    +  + ++ +   +  +L 
Sbjct: 607 TDSVRAERALTEKNEALRKADELK 630


>gi|119493836|ref|ZP_01624403.1| two-component sensor histidine kinase [Lyngbya sp. PCC 8106]
 gi|119452428|gb|EAW33617.1| two-component sensor histidine kinase [Lyngbya sp. PCC 8106]
          Length = 635

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 87/396 (21%), Positives = 174/396 (43%), Gaps = 27/396 (6%)

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            ++++EI   +  SI E   +G+     EG  L  N+ ++++ GY     +    T    
Sbjct: 241 ARQQLEIAEAKYRSIFENAVEGLFQSTPEGRFLDVNKTLARMCGYQSPQEMMAKVTDIKS 300

Query: 503 QN--TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT--- 557
           Q    P     ++  I        L   +     E  ++ +    + +  +    +    
Sbjct: 301 QMYVDPQRRTEFIRLIEEQG--CVLAFESQVYHAESNIIWISENARAVRDAPGNIIVYEG 358

Query: 558 -MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            + +I+E K+ + ++  A +  ++ +  KS F++ +SHE RTPLT I+  +E +      
Sbjct: 359 DVEEITERKRAEAEMRKALQKEKELNLLKSRFVSMISHEFRTPLTTIMASTEAL-EYYGH 417

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
                +  +Y + I  +   + D++ND+L I + E+ K+  +   + LD      +  +Q
Sbjct: 418 RWTEDKKDKYFSRIRVTIQHLTDLLNDVLIIGQSEAHKLPYNPTVIDLDSFCENLVEEIQ 477

Query: 677 LYANEK-RILIRTSF-------------ANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
           + AN+K  + +                  + I  I +D R ++ I +N+LSNA+ ++P G
Sbjct: 478 ITANKKCNLTLSIHGKNILNYLELAASQDSKILPI-SDERLLRHIFINLLSNAVKYSPKG 536

Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
           G+I +   + +  +V++ ++D G+G+   + +   + F +  N       GTGLGL + K
Sbjct: 537 GKIEMKLFYQAT-QVVVTIKDEGIGIPVEDQKHLFESFHRARNVGT--ISGTGLGLAIVK 593

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
             VD   G   + S   KGT+  +  PL       D
Sbjct: 594 RSVDRLGGTITVHSEVGKGTIFTVALPLQFEEREQD 629



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/143 (11%), Positives = 51/143 (35%), Gaps = 7/143 (4%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH---IGDLLKRQNT 142
            +     G   ++++ L +  G  + + +  ++ D+   +++DP      I  + ++   
Sbjct: 263 LFQSTPEGRFLDVNKTLARMCGYQSPQEMMAKVTDIKSQMYVDPQRRTEFIRLIEEQGCV 322

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
              ++ ++  E  +  + I   A  +         + G   V          A  ++  +
Sbjct: 323 LAFESQVYHAE--SNIIWISENARAVRDAPGNIIVYEG--DVEEITERKRAEAEMRKALQ 378

Query: 203 KFSHLHEIKKGHSSVEKEKYDIF 225
           K   L+ +K    S+   ++   
Sbjct: 379 KEKELNLLKSRFVSMISHEFRTP 401


>gi|158338274|ref|YP_001519451.1| two-component sensor histidine kinase [Acaryochloris marina
           MBIC11017]
 gi|158308515|gb|ABW30132.1| two-component sensor histidine kinase, putative [Acaryochloris
           marina MBIC11017]
          Length = 410

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 81/382 (21%), Positives = 151/382 (39%), Gaps = 34/382 (8%)

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP-----SVM 509
             IL+A  +G+  ++ EG +   N A +K+ G+   +++ +P    L  + P        
Sbjct: 33  QLILDAIGEGVYGLDIEGNVTFVNPAAAKMIGWSTAELIGQPMHAVLHHSHPNGSHYPKE 92

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWK 565
           N  +           +        ++     +  I   +           +T  DI++ +
Sbjct: 93  NCPIYAAFRDGKVYRVTDEVFWR-RDGTCFPVEYISTPIHDEQGQIVGAVVTFCDITQRQ 151

Query: 566 QEK------------------NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
             +                   +L    +  ++ S+ KS F+A V HE R PL  I    
Sbjct: 152 WAESVLKQTNEVLESKVRERTAELEQVNQQLQELSALKSRFVAMVCHEFRNPLNNIALSI 211

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
             + N+    L   +  EY   I  +   + ++++D+L I K+++ +M L    V L   
Sbjct: 212 SSL-NRYHSRLTVRQQSEYLAGIAENVERMTEMIDDILVIGKLDAKRMELKSAEVDLVAF 270

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727
             + ++ VQ  A    +L+       I  I  D++ ++ I  NIL NAI ++P  G+I  
Sbjct: 271 CQDLVAEVQSMAPHHVVLLICRHRQLITPI--DVQLLRSILTNILHNAIRYSPEDGEIQF 328

Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
             +   +  +  ++ D G+G++  E      PF +  N       GTGLGL + K  V+ 
Sbjct: 329 KVSRRKHI-ITFQISDQGMGVSPEEQSLIFDPFYRGKN--VSNVPGTGLGLSIVKQFVEL 385

Query: 788 NMGKFYIFSTPAKGTLIEIIFP 809
             G   + S    GT   +  P
Sbjct: 386 LQGTITLDSRIGVGTTFTVRLP 407



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/148 (14%), Positives = 50/148 (33%), Gaps = 10/148 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN------HIGDLLKR 139
            + +D  G +  ++    K IG    ++IG  +  V    H + ++       I    + 
Sbjct: 43  VYGLDIEGNVTFVNPAAAKMIGWSTAELIGQPMHAVLHHSHPNGSHYPKENCPIYAAFRD 102

Query: 140 QNTWY-GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
              +       W  +GT    P++  + PI+    +  G        + +       L +
Sbjct: 103 GKVYRVTDEVFWRRDGTCF--PVEYISTPIHDEQGQIVGAV-VTFCDITQRQWAESVLKQ 159

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFS 226
             +   S + E       V ++  ++ +
Sbjct: 160 TNEVLESKVRERTAELEQVNQQLQELSA 187



 Score = 47.3 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 21/167 (12%), Positives = 46/167 (27%), Gaps = 18/167 (10%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
           P      +         +D      +     GN+ + NP+   +  + + + I       
Sbjct: 19  PPRDLALEILWQHHQLILDAIGEGVYGLDIEGNVTFVNPAAAKMIGWSTAELIGQPMHAV 78

Query: 368 ----------------TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN-RENS 410
                            +  A +      +   + +R D TC         I     +  
Sbjct: 79  LHHSHPNGSHYPKENCPIYAAFRDGKVYRVTDEVFWRRDGTCFPVEYISTPIHDEQGQIV 138

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
            A+         Q+ E++ +   E  +   R    ++E    QL  +
Sbjct: 139 GAVVTFCDITQRQWAESVLKQTNEVLESKVRERTAELEQVNQQLQEL 185


>gi|315181980|gb|ADT88893.1| PAS/PAC sensor hybrid histidine kinase [Vibrio furnissii NCTC
           11218]
          Length = 1190

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 89/444 (20%), Positives = 175/444 (39%), Gaps = 39/444 (8%)

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
              +A   +  W    S       F  +           +  +  + +  +  +  ++  
Sbjct: 514 WWNNAYFSSQSWRDYQSQIYLIAAFLLSLGIISTFWNRRLAQQVKERQAAENSLSAQLQF 573

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS-VMNHY 512
           + S++      I + + +  +++ N    ++FG      +        +    +      
Sbjct: 574 MQSLINGIPHPIYVRDNQLKLVTCNSQYYQVFGLDRASAIGTTPQEVKKNLQEAVKFESD 633

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH----DISEWKQEK 568
             +++       +++    +      LS+   I+    ++ + L +     D+S+ +   
Sbjct: 634 YQQVIRTGEPILVDRTLHVA---GSELSIYHWIEPYKDAAGHCLGVICGWIDVSDRRDLI 690

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV-IKNQRFGPLGNPRYIEYA 627
            +L        + S  K+ FLA +SHEIRTP+ AIIG  E+ IK    G    P      
Sbjct: 691 EQL-------TQASKAKTTFLATMSHEIRTPMNAIIGLLEIAIKKSHQGHFDVP----AL 739

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
                S + +  ++ D+LDI +IESG +++  + V+L + V     +    A +K I + 
Sbjct: 740 EVAYDSAHNLQVLIGDILDIVRIESGHISIAPQRVNLRDLVESITRVFDGLARQKYIQLD 799

Query: 688 TSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIIS---------TTHTSNEE 736
                 I + +  D   +KQI  N+LSNAI FT  GG  + ++         T       
Sbjct: 800 VHIDPTITQDVYVDPTRLKQILSNLLSNAIKFTDQGGVTVTVTNHGPSETTFTEPEQQGS 859

Query: 737 VI----LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
           +       V+DTG G++     +   PF Q+ +      +GTGLGL + +++ +   G  
Sbjct: 860 IAERYSFVVKDTGTGISEEAQPRLFAPFVQVHSDVDR--QGTGLGLSIVQSLCNMMGGTI 917

Query: 793 YIFSTPAKGTLIEII--FPLYDTS 814
            + S    GT IE+    P+ +  
Sbjct: 918 ALCSEVGVGTQIEVSLVLPVLEPE 941


>gi|218259890|ref|ZP_03475422.1| hypothetical protein PRABACTJOHN_01081 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224855|gb|EEC97505.1| hypothetical protein PRABACTJOHN_01081 [Parabacteroides johnsonii
           DSM 18315]
          Length = 475

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 96/494 (19%), Positives = 194/494 (39%), Gaps = 36/494 (7%)

Query: 328 KCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
             P+   +Y  +G L   N   + +    S +           +   ++ +  + +  + 
Sbjct: 3   NIPVGIELYDKNGYLVDMNNMDVEIFGLPSKEAALGINIFENPIIPEEIREKLSRRESVS 62

Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
           +R D +              ++ +L +        +   + +    I  ++ D  +   +
Sbjct: 63  FRLDYSFNKIK-DEDYYPTGKKGALDILTKVSMLYDTNGDLINYMLINLDNTDKTVAYNR 121

Query: 447 MEIEVMQLCSILEATSDGIAIINREGI----ILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
           +E        +      G A  + +      I    + + ++ G P+ +++       + 
Sbjct: 122 IEEFEHFFSLVSRFAKVGYAKFDLQSNEGYAIDQWYQNLGEVEGTPLSEVIG--VYDHVH 179

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK-----LPFSSCYSLT 557
                VM  +   +       ++ K       +E     R+ I +      P        
Sbjct: 180 PEDRKVMVDFFENVR-QGTASSIRKELRIQNGDE-WRWTRVNIMRNTQSTDPDRLEMICV 237

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
            +DI+E K+ + +    ++ AE+    KS FLA +SHEIRTPL AI+GFS ++ +     
Sbjct: 238 NYDITELKETQKQ----REKAEELDRLKSAFLANMSHEIRTPLNAIVGFSTLLVDTD--- 290

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
                  ++   I ++  L+L +++D+LD++KIESG + L    V L E   E +  +++
Sbjct: 291 -DPEEKKQFVEIIQKNNELLLQLISDVLDLAKIESGIIELKLVEVDLRELCKELVVSMRI 349

Query: 678 YANEKRILIRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-SN 734
                   +    A ++P   +  D   + QI  N ++NAI  T  G    I   +    
Sbjct: 350 KVPA---EVALCVAPDLPSYIMRCDKVRLTQIISNFINNAIKHTSKG---TIVLGYEVRQ 403

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
           +E+   V DTG GM+    +     F +  + +    +GTGLGL + K++++   GK  +
Sbjct: 404 DEIEFSVTDTGDGMSPEVQQHVFDRFYKGNSFK----QGTGLGLSICKSIIEQVGGKIGV 459

Query: 795 FSTPAKGTLIEIIF 808
            S   KG+      
Sbjct: 460 ESEEGKGSRFWFTL 473


>gi|333002945|gb|EGK22501.1| sensor kinase protein rcsC [Shigella flexneri K-272]
          Length = 933

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 99/495 (20%), Positives = 186/495 (37%), Gaps = 41/495 (8%)

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
             P+   +             + LT  +S    +                    + ++L 
Sbjct: 223 TLPMGVTILDENGHT-----LISLTGPESKIKGDPRWMQERSWFGY----TEGFRELVLK 273

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV---DTRINK 444
           ++      +      +    E    +              +       E         + 
Sbjct: 274 KNLPPSSLSIVYSVPVDKVLERIRMLILNAILLNVLAGAALFTLARMYERRIFIPAESDA 333

Query: 445 RKMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            ++E        I+ +   GI I+   +G+ + +N            +  ++        
Sbjct: 334 LRLEEHEQFNRKIVASAPVGICILRTADGVNILSNELAHTYLNMLTHEDRQR-------- 385

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                    LT+I+       ++      T     L +  +  +    +     + D+S 
Sbjct: 386 ---------LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSS 432

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + +  L    + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R 
Sbjct: 433 RVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR- 490

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
                 ++ S +L+L I++D+LD SKIES ++ +     S  E ++   +        K+
Sbjct: 491 --LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQ 548

Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           + +      ++P  +  D   ++Q+  N+LSNAI FT +G  I++       + + +RVR
Sbjct: 549 LGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG-CIVLHVR-ADGDYLSIRVR 606

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTGVG+   E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+
Sbjct: 607 DTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGS 666

Query: 803 LIEIIFPLYDTSHPH 817
              +  PLY   +P 
Sbjct: 667 QFTVRIPLYGAQYPQ 681


>gi|332163059|ref|YP_004299636.1| aerobic respiration control sensor protein ArcB [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|325667289|gb|ADZ43933.1| aerobic respiration control sensor protein ArcB [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
          Length = 794

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 78/374 (20%), Positives = 162/374 (43%), Gaps = 16/374 (4%)

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
                + ++  +   L S L+A+ D +   N +      NRA+  L G   + ++     
Sbjct: 142 HREQAQVELGQQSALLRSFLDASPDLVYYRNEDNEFSGCNRAMELLTGKSEKQLVGLTPK 201

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII--KKLPFSSCYSL 556
                +    +     ++   ++  T E+  +     +    LR +    ++        
Sbjct: 202 DVYAPDIAEKVMETDEKVFRHNVSLTYEQWLVYPDGRKACFELRKVPFYDRVGKRHGLMG 261

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
              DI+E K+ ++ L +        S  K+ F++ +SHE+RTPL  I+G S ++ +    
Sbjct: 262 FGRDITERKRYQDALEN-------ASRDKTTFISTISHELRTPLNGIVGLSRILLDTEL- 313

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
              +   ++Y   I  S   + +I ND++++ K+E  K+ L  +P+     +++  +L  
Sbjct: 314 ---DSEQLKYLKTIHVSAITLGNIFNDIIEMDKLERRKVQLDNQPIDFTGFMADLENLSG 370

Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
           L    K +         +P  ++ D   ++QI  N++ NA+ FT  G +I++     SN+
Sbjct: 371 LLVQPKGLKFIMEPQLPLPEKVITDGTRLRQILWNLIGNAVKFTQQG-EIVVRVRRESND 429

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ-IRGEGTGLGLPLAKAMVDANMGKFYI 794
            +I  V D+G+G+   E +K    + Q+ +S       GTG+GL ++K +  +  G   +
Sbjct: 430 RLIFEVEDSGMGIPEDEQDKIFAMYYQVKDSNGGRPATGTGIGLAVSKRLAQSMGGDITV 489

Query: 795 FSTPAKGTLIEIIF 808
            S    G+   +  
Sbjct: 490 KSVQGAGSCFTLTI 503



 Score = 41.6 bits (96), Expect = 0.52,   Method: Composition-based stats.
 Identities = 16/124 (12%), Positives = 35/124 (28%), Gaps = 5/124 (4%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN-TWYGKTTLWPIE 153
               +  +    G    +++G+   DV      +      + + R N +   +  L   +
Sbjct: 177 FSGCNRAMELLTGKSEKQLVGLTPKDVYAPDIAEKVMETDEKVFRHNVSLTYEQWLVYPD 236

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
           G       +L  +P Y R  +  G  GFG           +   +   +  +        
Sbjct: 237 GRKACF--ELRKVPFYDRVGKRHGLMGFG--RDITERKRYQDALENASRDKTTFISTISH 292

Query: 214 HSSV 217
               
Sbjct: 293 ELRT 296



 Score = 39.2 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 21/224 (9%), Positives = 53/224 (23%), Gaps = 10/224 (4%)

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
           V  L E       ++   +       E +    E+   +N     + +          + 
Sbjct: 77  VEQLEESRQRLSRLVDKLEVMRYRDLELNKQLTENIAQLNQEIVERGKAEKAHLQVVDKL 136

Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVD 358
            E + H           +   L    +D  P   +  +        N +  LLT      
Sbjct: 137 KEEMGH--REQAQVELGQQSALLRSFLDASPDLVYYRNEDNEFSGCNRAMELLTGKSEKQ 194

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
            +        L      + + A K +           +      + +             
Sbjct: 195 LVG-------LTPKDVYAPDIAEKVMETDEKVFRHNVSLTYEQWLVYPDGRKACFELRKV 247

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
              ++  +     G   +  + +  +  +E       + +   S
Sbjct: 248 PFYDRVGKRHGLMGFGRDITERKRYQDALENASRDKTTFISTIS 291


>gi|313891467|ref|ZP_07825083.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Dialister microaerophilus UPII 345-E]
 gi|313120242|gb|EFR43418.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Dialister microaerophilus UPII 345-E]
          Length = 650

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 75/366 (20%), Positives = 154/366 (42%), Gaps = 28/366 (7%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
             ME +   +  ++    DGI ++N +  I+  NR   K+F    +   RK  +++ + +
Sbjct: 229 EDMEEDRNNIRIVMNTIYDGIILLNDKKEIIDYNRRAEKIFNPSEDKRFRKISSMYCDHD 288

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-CYSLTMHDISE 563
               ++    +        T+          +K   + +    LP       + + D++ 
Sbjct: 289 WLRAVDRAYRDENRQKYTMTIA---------DKPFKVIMTRTILPEEQHGVLIVLRDMT- 338

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
                                + +F A VSHE++TPLT I GF+E+I             
Sbjct: 339 -------------AEHIAEKMRREFSANVSHELKTPLTTISGFAEMIAKGMC--KDTEDI 383

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
             ++N I +    +L +++ ++ +SKIE  +  + ++ VS+D  +     L+   A +K 
Sbjct: 384 KNFSNKIHQESRRMLSLIDTIMHLSKIEEKETTISWKLVSVDSVLKYVADLITSQATKKD 443

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
           + I          +  +   + ++ +N+L NA+ +   GG I +       + + + + D
Sbjct: 444 LKINLDIEP--VYMYGNAALLSELFMNLLDNAVKYNVKGGNITVHIKRLKEKLMKITISD 501

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TGVG+   +  +  + F +   S+     G+GLGL + K +++ + GK  I S   KGT 
Sbjct: 502 TGVGIPEEKQNRVFERFFRAEESRNKATGGSGLGLSICKHIIERHNGKIEISSIEGKGTT 561

Query: 804 IEIIFP 809
           + +  P
Sbjct: 562 VIVELP 567


>gi|224537669|ref|ZP_03678208.1| hypothetical protein BACCELL_02551 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520728|gb|EEF89833.1| hypothetical protein BACCELL_02551 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 431

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 82/390 (21%), Positives = 160/390 (41%), Gaps = 34/390 (8%)

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            ++ +        SI++     I +I+R+ ++  TN     +      +         L 
Sbjct: 36  ARKALRGSEELFRSIMQNVHAFILLIDRDFVVTRTN--YYDITKARQPEGRLARVGDLLR 93

Query: 503 QN----------------TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS----LR 542
            N                +  +         +      LE I     +  ++      + 
Sbjct: 94  CNNALSAEGGCGTHELCGSCPIRKKIEETFRAKSSFTDLEAILDIRDRRGEVAECDTYVS 153

Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
               ++       +T+HDI+  K+ + +L+ A++ AE     KS FLA +SHEIRTPL A
Sbjct: 154 GEYMEIDDKEGMVITVHDITRLKKAEAELNRAREKAENADRSKSAFLANMSHEIRTPLNA 213

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           I+GFSE++              ++   +  +  L+  ++ D+LD+SKIE+G +   F  V
Sbjct: 214 IVGFSELLA----SASTEEEKAQFLEIVHSNNELLQQLIADILDLSKIEAGTLEFTFSEV 269

Query: 663 SLDEAVSEAISLVQLYANEKR--ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720
            +++ + +   L ++   +K   I I      +   +  D   ++Q+  N ++NA+ FT 
Sbjct: 270 DVNQLMFDIEQLFRMRLEDKSAVIQIIRQTPPDECVMYTDRNRLQQVVSNFMTNAVKFTD 329

Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
            G  I       +   +   V+DTG G+   ++    + F ++        +GTGLGL +
Sbjct: 330 EGS-ITFGYNRCAEG-LYFYVKDTGSGIPEDKVNHIFERFVRVEQ----NKKGTGLGLAI 383

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            + ++    GK  + S   KG+      P+
Sbjct: 384 CEMIIRKLGGKIGVESEYGKGSTFWFTLPI 413


>gi|134280682|ref|ZP_01767392.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 305]
 gi|134247704|gb|EBA47788.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 305]
          Length = 1014

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 126/677 (18%), Positives = 232/677 (34%), Gaps = 59/677 (8%)

Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH 233
           +F   +G+ ++H  +      A+G     +          + ++ + +  +   QSP P 
Sbjct: 111 QFDAHQGYAVLHTPQGAPAALAVGIPAPGRS---ASAFAPYLALLETQLLMGDGQSPLPD 167

Query: 234 LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293
            R++    S    Y       + +         S+                 +     + 
Sbjct: 168 DRVEGYSFSPDGTYLSLLWSREDQAPEAFIESHSASGL---IGDAMRGIRYLRDASTIVP 224

Query: 294 NNSKESFEYLSHRNHP--------SLSAYFDEGENLTPETVDKCPIPFF----------- 334
             +     +L     P         +    D    L    V   P+  F           
Sbjct: 225 LRADRRTVWLPPHPDPLTGKPMIRIVQPAIDATGKLFAIYVRSLPLDMFYSNLNDAPAGS 284

Query: 335 ----VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390
               V   GN+   + +        +   + I       L           +  M   SD
Sbjct: 285 TLTIVDRKGNVILGSSNQHGGDGGATASALGI-----RSLGDGFGGLVERYQDGMFVTSD 339

Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR------INK 444
           +        +H   W    + A+              +    +     D +         
Sbjct: 340 QLPGTDWVLVHAYSWK-TIAAALALRFSLVTGLVAGIIVMLWLFAIQFDRKGLIPNYRRA 398

Query: 445 RKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
           +++    +   +IL     G+ +++  +G +L  N A+ +L     ++ L          
Sbjct: 399 QRLLESEVLNRTILRTAPVGLGLLSAQDGSVLLQNNAMLELSARTSDEPLPIRLWEAYRH 458

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                 +               +            L   ++  +   ++    T+ DIS 
Sbjct: 459 AVGRSSDE-------DGALLQHDLAIEREGANPVYLQANVVAARYRGANVLLCTLLDISL 511

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            K+ + KL  A+  A++ +  KS FLA +SHEIRTPL AIIG  E+++        + + 
Sbjct: 512 RKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPL----SEQQ 567

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            E  + ++   N +L I+ND+LD+SK+ESG+M L   P  +   + E +      A  K 
Sbjct: 568 SERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAYAPLAESKG 627

Query: 684 ILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIST----THTSNEEVI 738
           + + +S    + R    D   ++Q+  N++ NAI FT  G  I I             + 
Sbjct: 628 LALLSSIGEGVARHYAGDPTRIRQVLSNLIGNAIKFTERG-HISIDVHRAKAARDGSAIE 686

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           + V DTG+G+    +      + Q   S   R  G+GLGLPL + +V    G   I S P
Sbjct: 687 IWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLP 746

Query: 799 AKGTLIEIIFPLYDTSH 815
             GT + +  PL +  H
Sbjct: 747 DFGTTVTVALPLREARH 763


>gi|300903600|ref|ZP_07121518.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 84-1]
 gi|301306550|ref|ZP_07212613.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 124-1]
 gi|300404336|gb|EFJ87874.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 84-1]
 gi|300838210|gb|EFK65970.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 124-1]
 gi|315255153|gb|EFU35121.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 85-1]
          Length = 933

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 99/495 (20%), Positives = 186/495 (37%), Gaps = 41/495 (8%)

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
             P+   +             + LT  +S    +                    + ++L 
Sbjct: 223 TLPMGVTILDENGHT-----LISLTGPESKIKGDPRWMQERSWFGY----TEGFRELVLK 273

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV---DTRINK 444
           ++      +      +    E    +              +       E         + 
Sbjct: 274 KNLPPSSLSIVYSVPVDKVLERIRMLILNAILLNVLAGAALFTLARMYERRIFIPAESDA 333

Query: 445 RKMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            ++E        I+ +   GI I+   +G+ + +N            +  ++        
Sbjct: 334 LRLEEHEQFNRKIVASAPVGICILRTADGVNILSNELAHTYLNMLTHEDRQR-------- 385

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                    LT+I+       ++      T     L +  +  +    +     + D+S 
Sbjct: 386 ---------LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSS 432

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + +  L    + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R 
Sbjct: 433 RVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR- 490

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
                 ++ S +L+L I++D+LD SKIES ++ +     S  E ++   +        K+
Sbjct: 491 --LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQ 548

Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           + +      ++P  +  D   ++Q+  N+LSNAI FT +G  I++       + + +RVR
Sbjct: 549 LGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG-CIVLHVR-ADGDYLSIRVR 606

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTGVG+   E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+
Sbjct: 607 DTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGS 666

Query: 803 LIEIIFPLYDTSHPH 817
              +  PLY   +P 
Sbjct: 667 QFTVRIPLYGAQYPQ 681


>gi|309786603|ref|ZP_07681224.1| sensor kinase protein rcsC [Shigella dysenteriae 1617]
 gi|81240324|gb|ABB61034.1| sensor for ctr capsule biosynthesis [Shigella dysenteriae Sd197]
 gi|308925512|gb|EFP70998.1| sensor kinase protein rcsC [Shigella dysenteriae 1617]
          Length = 933

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 99/495 (20%), Positives = 186/495 (37%), Gaps = 41/495 (8%)

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
             P+   +             + LT  +S    +                    + ++L 
Sbjct: 223 TLPMGVTILDENGHT-----LISLTGPESKIKGDPRWMQERSWFGY----TEGFRELVLK 273

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV---DTRINK 444
           ++      +      +    E    +              +       E         + 
Sbjct: 274 KNLPPSSLSIVYSVPVDKVLERIRMLILNAILLNVLAGAALFTLARMYERRIFIPAESDA 333

Query: 445 RKMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            ++E        I+ +   GI I+   +G+ + +N            +  ++        
Sbjct: 334 LRLEEHEQFNRKIVASAPVGICILRTADGVNILSNELAHTYLNMLTHEDRQR-------- 385

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                    LT+I+       ++      T     L +  +  +    +     + D+S 
Sbjct: 386 ---------LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSS 432

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + +  L    + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R 
Sbjct: 433 RVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR- 490

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
                 ++ S +L+L I++D+LD SKIES ++ +     S  E ++   +        K+
Sbjct: 491 --LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQ 548

Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           + +      ++P  +  D   ++Q+  N+LSNAI FT +G  I++       + + +RVR
Sbjct: 549 LGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG-CIVLHVR-ADGDYLSIRVR 606

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTGVG+   E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+
Sbjct: 607 DTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGS 666

Query: 803 LIEIIFPLYDTSHPH 817
              +  PLY   +P 
Sbjct: 667 QFTVRIPLYGAQYPQ 681


>gi|154490162|ref|ZP_02030423.1| hypothetical protein PARMER_00394 [Parabacteroides merdae ATCC
           43184]
 gi|154089054|gb|EDN88098.1| hypothetical protein PARMER_00394 [Parabacteroides merdae ATCC
           43184]
          Length = 798

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 98/514 (19%), Positives = 194/514 (37%), Gaps = 36/514 (7%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
              +   D  E L        P+   +Y   G L   N   + +    S + +       
Sbjct: 307 ARTNEALDHSEKLLRNIYTNIPVGIELYDKKGYLVDLNNMDVEIFGLPSKESVLGLNIFE 366

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
             +   ++ +    +  + +  D +      +             +        + + + 
Sbjct: 367 NPMINDEIREKLISREPVSFHMDYSFNTIEDKGFYPTMKNGTI-DIFTKVCMLYDIYGDL 425

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN---REGI-ILSTNRAVSK 483
           +    I  ++ D  +   ++E        +      G A  +   REG  I    + + +
Sbjct: 426 INYMFINLDNTDKAVAYNRIEEFEHFFSLVSRFAKVGYAKFDLLTREGYAIDQWYQNLGE 485

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
             G P+ +++       +      VM ++  ++        + +       E      R+
Sbjct: 486 KEGVPLSEVIG--VYSQIHPEDRKVMFNFFEQVKKGQCDS-IRRELRVKYGEG-WHWTRV 541

Query: 544 IIKKL-----PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
            + +      P         +DI+E K+ + +    ++ AE+    KS FLA +SHEIRT
Sbjct: 542 NVMRNTQSTNPDRLEMICVNYDITELKETQKQ----REKAEELDRLKSAFLANMSHEIRT 597

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
           PL AI+GFS ++ +            ++   I ++  L+L +++D+LD++KIESG + L 
Sbjct: 598 PLNAIVGFSTLLVDTD----DPEEKKQFVEIIQKNNELLLQLISDVLDLAKIESGIIELK 653

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR--ILADLRSVKQIALNILSNAI 716
              V L E   E +  +++        +      ++P   +  D   + QI  N ++NAI
Sbjct: 654 LVEVDLRELCKELVVSMRIKVPA---EVALCVVPDLPSYIMRCDKVRLTQIISNFINNAI 710

Query: 717 HFTPSGGQIIISTTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
             T  G    I   +    +E+   V DTG GM+          F +  + +    +GTG
Sbjct: 711 KHTSKG---TILLGYEIRWDEIEFSVTDTGDGMSPEVQRHVFDRFYKGNSFK----QGTG 763

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           LGL + K++++   GK  + S   KG+      P
Sbjct: 764 LGLSICKSIIEQVGGKIGVESEIGKGSRFWFTLP 797



 Score = 38.9 bits (89), Expect = 3.9,   Method: Composition-based stats.
 Identities = 11/103 (10%), Positives = 35/103 (33%), Gaps = 4/103 (3%)

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
                    ++     L +I      GI + +++G ++  N    ++FG P ++      
Sbjct: 304 TKMARTNEALDHSEKLLRNIYTNIPVGIELYDKKGYLVDLNNMDVEIFGLPSKE----SV 359

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
                   P + +    +++S +        +  + +++    
Sbjct: 360 LGLNIFENPMINDEIREKLISREPVSFHMDYSFNTIEDKGFYP 402


>gi|299831229|gb|ADJ55757.1| hypothetical protein [Clostridium sporogenes]
          Length = 624

 Score =  303 bits (777), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 88/375 (23%), Positives = 166/375 (44%), Gaps = 13/375 (3%)

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLF-GYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           ++E   D I I  ++  I+  N + S+L       ++       F+ Q     + + L  
Sbjct: 229 LIENARDAIIIHRKD-KIVFANESASELLICDNNAELQNININKFIVQEEQKKIKNKLEL 287

Query: 516 ILSLDLRQT-LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA 574
           +         +E+I   + +E+  +                  + DI+  KQ +      
Sbjct: 288 VYKNKTDMICVEQIIQNNKREKINVESICTYIIYNNKPAILSILRDITSQKQVEKLQKDV 347

Query: 575 KKIAEKESSHK------SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
           +K  E  +  +      +DFLA +SHE++TPL  I    +++   +       +  +Y  
Sbjct: 348 EKNIELLNESREYNKLITDFLANISHELKTPLNVIFTAVQILDLYKKDGNSYDKKEQYIK 407

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I ++   ++ ++N+LLD +K++SG + L+    ++   + E    V  YA  K I I  
Sbjct: 408 VIKQNCYRLMRLINNLLDTTKLDSGYLKLNLVNCNIVNLIEEITLSVVYYAESKDINIIF 467

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748
                   +  D   +++I LN+LSNAI FT SGG I ++      + + + V+DTG+G+
Sbjct: 468 DTDVEEKIMAVDPDKIERIILNLLSNAIKFTGSGGNIYVNIK-DCKDSITISVKDTGIGI 526

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
              ++E   + F Q+  + +   EG+G+GL L K+ V+ + G   I S   KG+   I  
Sbjct: 527 PQDKIENIFERFVQVDKTLRRNKEGSGIGLYLVKSFVNMHEGTIDIQSVIGKGSEFIINI 586

Query: 809 P---LYDTSHPHDCI 820
           P   + + S   + I
Sbjct: 587 PVKLVKEESESENSI 601


>gi|292899966|ref|YP_003539335.1| two-component system, sensor kinase and response regulator [Erwinia
           amylovora ATCC 49946]
 gi|291199814|emb|CBJ46937.1| two-component system, sensor kinase and response regulator [Erwinia
           amylovora ATCC 49946]
          Length = 956

 Score =  303 bits (777), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 96/378 (25%), Positives = 172/378 (45%), Gaps = 29/378 (7%)

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKP 496
           +    N  ++E +      I+ +   GI I+   +G  + +N                  
Sbjct: 345 LPAEENAYRLEEQEQFNRKIVASAPVGICILRTSDGTNILSNELA-------------HN 391

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556
           +   L Q         LTE++       ++      T     L +  +  +    +    
Sbjct: 392 YLTLLTQEDRL----RLTEMICGQQVNFVD----VLTGSNTNLQISFVHSRYRNENVAIC 443

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            + D+S   + +  L    + AE+ S  KS FLA VSHE+RTPL  IIG  +++K +   
Sbjct: 444 VLVDVSARVKMEQSLHEIAQEAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLKTKALP 503

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
              +         ++ S +L+L I++D+LD SKIES ++ +     S  E ++   +   
Sbjct: 504 AGADS----LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVIAHITANYL 559

Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
             A +KR+ +     +++P +L  D   ++Q+  N+L+NAI FT +GG  II   +   +
Sbjct: 560 AMAVKKRLTLWCFIDSDVPVLLEGDPMRLQQVISNLLNNAIKFTHTGG--IILQAYVKGD 617

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            +  RVRD+GVG+   E+ +   PF Q+ +  Q   +GTGLGL + + +++   G   + 
Sbjct: 618 YLAFRVRDSGVGIPAKEITRLFDPFFQVGSGVQRHFQGTGLGLAICEKLMNMMDGDIEVE 677

Query: 796 STPAKGTLIEIIFPLYDT 813
           S P  G+   I  PLY++
Sbjct: 678 SEPGMGSQFIIRIPLYNS 695


>gi|126444558|ref|YP_001061186.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 668]
 gi|126224049|gb|ABN87554.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 668]
          Length = 1014

 Score =  303 bits (777), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 126/677 (18%), Positives = 232/677 (34%), Gaps = 59/677 (8%)

Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH 233
           +F   +G+ ++H  +      A+G     +          + ++ + +  +   QSP P 
Sbjct: 111 QFDAHQGYAVLHTPQGAPAALAVGIPAPGRS---ASAFAPYLALLETQLLMGDGQSPLPD 167

Query: 234 LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293
            R++    S    Y       + +         S+                 +     + 
Sbjct: 168 DRVEGYSFSPDGTYLSLLWSREDQAPEAFIESHSASGL---IGDAMRGIRYLRDASTIVP 224

Query: 294 NNSKESFEYLSHRNHP--------SLSAYFDEGENLTPETVDKCPIPFF----------- 334
             +     +L     P         +    D    L    V   P+  F           
Sbjct: 225 LRADRRTVWLPPHPDPLTGKPMIRIVQPAIDATGKLFAIYVRSLPLDMFYSNLNDAPAGS 284

Query: 335 ----VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390
               V   GN+   + +        +   + I       L           +  M   SD
Sbjct: 285 TLTIVDRKGNVILGSSNQHGGDGGATASALGI-----RSLGDGFGGLVERYQDGMFVTSD 339

Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR------INK 444
           +        +H   W    + A+              +    +     D +         
Sbjct: 340 QLPGTDWVLVHAYSWK-TIAAALALRFSLVTGLVAGIIVMLWLFAIQFDRKGLIPNYRRA 398

Query: 445 RKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
           +++    +   +IL     G+ +++  +G +L  N A+ +L     ++ L          
Sbjct: 399 QRLLESEVLNRTILRTAPVGLGLLSAQDGSVLLQNNAMLELSARTSDEPLPIRLWEAYRH 458

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                 +               +            L   ++  +   ++    T+ DIS 
Sbjct: 459 AVGRSSDE-------DGALLQHDLAIEREGANPVYLQANVVAARYRGANVLLCTLLDISL 511

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            K+ + KL  A+  A++ +  KS FLA +SHEIRTPL AIIG  E+++        + + 
Sbjct: 512 RKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPL----SEQQ 567

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            E  + ++   N +L I+ND+LD+SK+ESG+M L   P  +   + E +      A  K 
Sbjct: 568 SERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAYAPLAESKG 627

Query: 684 ILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIST----THTSNEEVI 738
           + + +S    + R    D   ++Q+  N++ NAI FT  G  I I             + 
Sbjct: 628 LALLSSIGEGVARHYTGDPTRIRQVLSNLIGNAIKFTERG-HISIDVHRAKAARDGSAIE 686

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           + V DTG+G+    +      + Q   S   R  G+GLGLPL + +V    G   I S P
Sbjct: 687 IWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLP 746

Query: 799 AKGTLIEIIFPLYDTSH 815
             GT + +  PL +  H
Sbjct: 747 DFGTTVTVALPLREARH 763


>gi|256423016|ref|YP_003123669.1| histidine kinase [Chitinophaga pinensis DSM 2588]
 gi|256037924|gb|ACU61468.1| histidine kinase [Chitinophaga pinensis DSM 2588]
          Length = 736

 Score =  303 bits (777), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 81/254 (31%), Positives = 130/254 (51%), Gaps = 10/254 (3%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I + +Q    L H+++  +K +  K  FLA +SHEIRTP+ A++GF+ +++ Q      N
Sbjct: 208 IYKQEQLIEALDHSRQQEKKLTVVKDQFLANMSHEIRTPMNAVLGFTHLLQQQPL----N 263

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
            +  EY   I  +G  +LDI+ND+LDISKIESG M L     SL   +     + Q  A 
Sbjct: 264 EKSREYVASIQHAGENLLDIINDILDISKIESGMMRLEPVSFSLRGMMHSLQLMFQPKAQ 323

Query: 681 EKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE--- 736
           EK + +       +P I   D+  + Q+ +N+++NAI FTP G Q+ +  +     E   
Sbjct: 324 EKLLDLSVHIDAGVPDILYGDVMRLTQVLVNLVNNAIKFTPQG-QVTVRVSPVGGNESGI 382

Query: 737 -VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            ++  + DTG+G++  +L      F Q       +  GTGLGL + K +V+   G   + 
Sbjct: 383 RLLFTIADTGIGISPNKLSTIFDRFNQAEADITRKYGGTGLGLTIVKQLVELQHGTISVE 442

Query: 796 STPAKGTLIEIIFP 809
           S   KG+   +  P
Sbjct: 443 SELGKGSTFLVQLP 456


>gi|148654377|ref|YP_001274582.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp.
           RS-1]
 gi|148566487|gb|ABQ88632.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp.
           RS-1]
          Length = 556

 Score =  303 bits (777), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 95/530 (17%), Positives = 198/530 (37%), Gaps = 30/530 (5%)

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNL-FYANPSFLLLT 352
           +   +    L      S +             V +  +     + G +    +     + 
Sbjct: 3   DRYDQRLRQLESLLRISRAITAHLDLTSVLNLVIEVAVDLLAGNSGLIALRDDDGVTRIY 62

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
               +   E     + LL  P       ++ +    +D            + +       
Sbjct: 63  AASGLAR-ETWPAFTDLLATPIDDQPTLVRRLREVGADIGLPLRHVSALPLVFRGATVGV 121

Query: 413 M-TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM----EIEVMQLCSILEATSDGIAI 467
           +  F          E         +     ++  ++      E   L +++E ++DG+ I
Sbjct: 122 IYVFRAALNVEFTAEEHQLLTAFADQAAIAVSNARLFQSVLREKQHLDALIENSADGVMI 181

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR----Q 523
           ++    I + NRA+ +L G+  E+ + +P    L  +TP   N  LT+            
Sbjct: 182 LDSRWRITTFNRAMEQLTGWSREEAIGRPCAEVLAIHTPQGANLCLTDCPLQRQPFEPNP 241

Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKE 581
             E            +  R   ++ P  +       + D++E K               E
Sbjct: 242 VAEGWITTRDGRRLYIQSRYAAQRTPQGAFLGAIANVRDVTEQK--------------IE 287

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
           +  ++ F++ +SHE+RTP++ I G++E +  Q           E    I    + +   +
Sbjct: 288 AEMQNTFISVISHELRTPVSIIKGYAETLARQD-AAWDAATLREGLMVIIEEADRLAQQI 346

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701
           N LL+ S++++  M L      +   V   +      A  +R        +++P + AD 
Sbjct: 347 NTLLEASRLQTDGMRLELSDWPVRPLVERVVERFMPQA-GERFTFEIDIPDDLPPVHADY 405

Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761
              + +  N++SNAI ++P+GG + I+   +  +  I+ V D G+G+   E +K  + F 
Sbjct: 406 ERTRTVLENLVSNAIKYSPNGGLVRIAARVS-GDYAIISVSDQGIGIPFEEQKKLFRRFY 464

Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
           ++ N  +   +G GLGL L++ +V+A  G+ ++ S P +G+      PL 
Sbjct: 465 RVDNRLRRETQGAGLGLFLSRVIVEAQGGRIWVDSRPGRGSRFSFTVPLA 514



 Score = 43.5 bits (101), Expect = 0.15,   Method: Composition-based stats.
 Identities = 29/244 (11%), Positives = 68/244 (27%), Gaps = 9/244 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTWYGKT 147
           +D+   +   +  + +  G    + IG    +V  I      N  + D   ++  +    
Sbjct: 182 LDSRWRITTFNRAMEQLTGWSREEAIGRPCAEVLAIHTPQGANLCLTDCPLQRQPFEPNP 241

Query: 148 TL--WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
               W        + I        +    F G     I +V  V         +      
Sbjct: 242 VAEGWITTRDGRRLYIQSRYAAQRTPQGAFLGA----IANVRDVTEQKIEAEMQNTFISV 297

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
             HE++   S ++     +  Q +      ++  +  + E        + T         
Sbjct: 298 ISHELRTPVSIIKGYAETLARQDAAWDAATLREGLMVIIEEADRLAQQINTLLEASRLQT 357

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
           +    E  D+    L +   +++          +FE     + P + A ++    +    
Sbjct: 358 DGMRLELSDWPVRPLVERVVERFMPQAGER--FTFEIDIPDDLPPVHADYERTRTVLENL 415

Query: 326 VDKC 329
           V   
Sbjct: 416 VSNA 419


>gi|300918613|ref|ZP_07135201.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 115-1]
 gi|300414265|gb|EFJ97575.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 115-1]
          Length = 933

 Score =  303 bits (777), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 99/495 (20%), Positives = 186/495 (37%), Gaps = 41/495 (8%)

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
             P+   +             + LT  +S    +                    + ++L 
Sbjct: 223 TLPMGVTILDENGHT-----LISLTGPESKIKGDPRWMQERSWFGY----TEGFRELVLK 273

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV---DTRINK 444
           ++      +      +    E    +              +       E         + 
Sbjct: 274 KNLPPSSLSIVYSVPVDKVLERIRMLILNAILLNVLAGAALFTLARMYERRIFIPAESDA 333

Query: 445 RKMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            ++E        I+ +   GI I+   +G+ + +N            +  ++        
Sbjct: 334 LRLEEHEQFNRKIVASAPVGICILRTADGVNILSNELAHTYLNMLTHEDRQR-------- 385

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                    LT+I+       ++      T     L +  +  +    +     + D+S 
Sbjct: 386 ---------LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSS 432

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + +  L    + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R 
Sbjct: 433 RVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR- 490

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
                 ++ S +L+L I++D+LD SKIES ++ +     S  E ++   +        K+
Sbjct: 491 --LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQ 548

Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           + +      ++P  +  D   ++Q+  N+LSNAI FT +G  I++       + + +RVR
Sbjct: 549 LGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG-CIVLHVR-ADGDYLSIRVR 606

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTGVG+   E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+
Sbjct: 607 DTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGS 666

Query: 803 LIEIIFPLYDTSHPH 817
              +  PLY   +P 
Sbjct: 667 QFTVRIPLYGAQYPQ 681


>gi|298251422|ref|ZP_06975225.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297546014|gb|EFH79882.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 485

 Score =  303 bits (777), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 87/495 (17%), Positives = 178/495 (35%), Gaps = 30/495 (6%)

Query: 319 ENLTPETVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
                  +D  P   +V     L  Y N      T       I+           P+  D
Sbjct: 12  PASYDTLIDAIPQLVWVKRSDGLPDYTNQRVRDYTGLTKKQ-IQSDRWAHLQFIHPEDQD 70

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
            N +          T      RL   Q         +       N+  + +   G   + 
Sbjct: 71  GNRMH-WEYALDTGTMFEYEERLRNGQT--GEYRWFSTHTEPSHNEAGQIVTWFGTATDI 127

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL--RK 495
              +  +  +     +  +++++   GI I   E  I   N    ++ GY  ED+     
Sbjct: 128 DKQKRIEDVLREGQERADALMQSKIIGIIITQGE-QIEDANETFLRMTGYSQEDMHENHT 186

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555
                      +     L E+ +       EK  +   K+   L + +           +
Sbjct: 187 NILQMTPPEYMARTLQALQELGTQQSMTPYEKEYVC--KDGSRLPVLVCGVVFHHHPRQA 244

Query: 556 LTMH-DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
           +    D S  K+ + +              K DF+   SHE+R+PLT +   ++ + ++R
Sbjct: 245 INFVLDNSARKELEQR--------------KDDFINMASHELRSPLTVVKLQTQ-LVHKR 289

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                        + ++     +  ++ +LLD+S+I++G++    E V LD+ + E    
Sbjct: 290 LEKHSQHEAATALSRVEMPIKQLERLIAELLDVSQIQAGRLKYIRERVDLDKLLREIADT 349

Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
           +Q  +    I +R +   +   ++ D   ++Q+  N+LSNAI ++P    + +  + +  
Sbjct: 350 MQRMSPSHTIAVRGAVQTS---VIGDRDRLRQVFTNLLSNAIKYSPDATTVEVELSSSEE 406

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
             V +RV+D G+G+   + +K  + F +          G G+GL +   ++  + G   +
Sbjct: 407 A-VAIRVQDHGLGIPREQHKKIFERFYRAAGLSHETIPGLGMGLYIVAEIIKGHGGTITV 465

Query: 795 FSTPAKGTLIEIIFP 809
            S   KG+   +  P
Sbjct: 466 ESDIGKGSTFTVTLP 480


>gi|190572926|ref|YP_001970771.1| putative two-component sensor histidine kinase response regulator
           fusion protein [Stenotrophomonas maltophilia K279a]
 gi|190010848|emb|CAQ44457.1| putative two-component sensor histidine kinase response regulator
           fusion protein [Stenotrophomonas maltophilia K279a]
          Length = 923

 Score =  303 bits (777), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 118/642 (18%), Positives = 226/642 (35%), Gaps = 43/642 (6%)

Query: 191 NDPRALGK-----RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE 245
           +   AL +      L  +        +G   V  +       Q      R ++ + +L  
Sbjct: 68  DQREALLRYLGDSVLAGRPDAPAADSEGMRQVPLDGPGGQPGQRLLLSARAEHTLQALQT 127

Query: 246 YYAHKDDV-LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG-TLQNNSKESFEYL 303
           +    D           +  + + LP        N +     + +     +      + +
Sbjct: 128 HLLLVDARGAHWLAGDAVDVDLARLPSLRALQARNGSLEGADRVYWLRPGDRGVALAQPV 187

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIP--FFVYSHGNLFYANPSFLLLTKYKSVDDIE 361
               HP+         +     +D   I     +   G    ++ +  L     ++    
Sbjct: 188 QSGPHPAQWLVLLLDTDAAAGMIDGQGIGGYALLDRSGQPALSSQAPRLDRAGWTILRER 247

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                 TL           +K V     D   +        +  +    L +  +    A
Sbjct: 248 QDDSFGTLWSGGLPRGVALVKSVGN---DGWRLVYHLPPQLLLGDLAVPLLVCVLLLLLA 304

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI-ILSTNRA 480
                 +                R++   +    ++++    GI ++ R    +L +N+ 
Sbjct: 305 GVALRLLRHRVDLQLIQPALQQHRRLLENLDFSSTVIDMAPVGICVLRRNDRALLLSNQL 364

Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
           +    G   E    +                               +    + ++ + L 
Sbjct: 365 LRDWLGEEGEHSDWQAPW--------------------RGHAGERGRGLEFTARDGRQLQ 404

Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
           +     +           HDIS  +Q +  LS A++ A+  +  KS FLA +SHEIRTPL
Sbjct: 405 VLHAACRYQGDDVLLCVFHDISRHRQAQAALSSARQAADAANQAKSAFLATMSHEIRTPL 464

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
             ++G  E++ +       + R  +Y   I+ S +++L +++D+LD+SKIESG+++L   
Sbjct: 465 YGVLGTLELLGHTSL----DARQSQYLRTIESSSSVLLQLISDVLDVSKIESGQLSLEPA 520

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFT 719
             S  E     +      A  K + I       +P R+L D   ++Q+  N+LSNAI FT
Sbjct: 521 AFSPRELTESVLRSFAASATCKGLQILVCTDPRLPTRVLGDADRIRQVLGNLLSNAIKFT 580

Query: 720 PSGGQ-IIISTTHTSNEEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
             G   + +       E  +L  +V DTGVG+   E  +  +PF Q+  +     +GTGL
Sbjct: 581 EHGRVMLRVRQVQREGESSVLAWQVTDTGVGIAAEEQARLFEPFRQVRGAAS--AQGTGL 638

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
           GL ++  +V    G+  + S P  G+   +  PL   +   D
Sbjct: 639 GLSISDRLVRLMSGELQVVSEPGLGSSFSVRLPLPVLAAAED 680


>gi|159899042|ref|YP_001545289.1| PAS/PAC sensor hybrid histidine kinase [Herpetosiphon aurantiacus
            ATCC 23779]
 gi|159892081|gb|ABX05161.1| PAS/PAC sensor hybrid histidine kinase [Herpetosiphon aurantiacus
            ATCC 23779]
          Length = 1194

 Score =  303 bits (777), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 108/795 (13%), Positives = 239/795 (30%), Gaps = 72/795 (9%)

Query: 56   DQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIG 115
              N++              +F      +     ++  G + E++E     +G    +++ 
Sbjct: 300  STNKKLTVAVQESKQRFNAIFQTSSSPM-VITRLN-DGLILEVNESFRHLLGYQRVELVN 357

Query: 116  MRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP-IEGTNLYVPIDLAALPIYSRNRE 174
              + D++  + ++    +   LK+Q+             G  ++V   +  + + +    
Sbjct: 358  QPIQDLNIFVDLNDRAAMVRALKKQSYVSDYELEIRTKSGETIFVICSMTLIVLSNS--- 414

Query: 175  FSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS----- 229
                 GF ++H            K  +++   + E       +     ++F         
Sbjct: 415  ---LCGFTVIHNINNRKIYERKLKESEERLQIVIENLNEGIVLSDLDGNLFHWNRVALAM 471

Query: 230  -----PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS--EESSLPEQEDFHTINLNQ 282
                                E     + VL+ E++P+      E     +     IN   
Sbjct: 472  HGFANMEECRSRIPDFKDFYEISTLDNQVLEIEQWPMSRLIRGEILESIELKIRRINTPV 531

Query: 283  YTKK--QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG- 339
              ++  +Y G    +S          N  +   Y +E        +              
Sbjct: 532  VWERIFRYGGATVIDSSGHSVAFLTINDITERKYAEEKLRYQANLLAYVSDAIISTDSNY 591

Query: 340  NLFYANPSFLLLTKYKSVDDIEIAGG--LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397
             +   N +   + ++++ + I    G  + T       ++    +               
Sbjct: 592  VIKSWNRAAEEIYEWQAHEAIGQRFGSLIPTEYIHNDSNEQAGTQLFEQAFWQGEVYQFD 651

Query: 398  ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
                           +        N   +      I  +    +   + ++    +   +
Sbjct: 652  RY--------GQRHHILSSVSLIKNNHGQIQGTVAINRDITAYKQATQALQESERRFKIL 703

Query: 458  LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
             E+    I     +G     ++      G P  + L   +   +  +  + +       L
Sbjct: 704  TESLPQLIWTCTPDGKCDYLSQQWVHYTGIPESEQLGTAWIKQIHLDDQASIMQEWQYAL 763

Query: 518  SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSH 573
            +   +Q L         +            L   +     +    +DI + K+ ++    
Sbjct: 764  AT--QQKLHSEYRIRRYDNTYRWFDTQAVPLLGHNGEIIKWFGASNDIDDRKRAEDAQLR 821

Query: 574  AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
            ++K+              ++H+    L AI G ++ +      P            I+++
Sbjct: 822  SQKM-----EALGTLAGGIAHDFNNILLAITGNTQ-LAMFDLDPQHP--VQNNLREIEQA 873

Query: 634  GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693
            G    D+V  +L  S+    +  +  E V L   + EAI L++       + I+ +    
Sbjct: 874  GERATDLVRRILTFSR----QQEVKREIVLLPTIIDEAIKLLRATLPA-MVEIQVNIVGQ 928

Query: 694  IPRILADLRSVKQIALNILSNAIHFTPSG-GQIIISTTH--------------TSNEEVI 738
            IP   AD   + QI +N+ +NA H   +  G I I                       V 
Sbjct: 929  IPATAADPTQIFQIIMNLATNAAHAIGNNRGLIEIRLDLVHLTAELSRTIPNLHEGHYVR 988

Query: 739  LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
            L V D G GM    +++   PF          GEGTGLGL +   ++  + G   ++S  
Sbjct: 989  LSVSDNGCGMDKETIKRIFDPFFTTKPL----GEGTGLGLSVVDGIMKGHDGAITVYSQI 1044

Query: 799  AKGTLIEIIFPLYDT 813
             KG+   + FP  + 
Sbjct: 1045 NKGSTFRLYFPASNQ 1059



 Score =  118 bits (296), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 61/568 (10%), Positives = 151/568 (26%), Gaps = 39/568 (6%)

Query: 44  PCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPI-PRTVRFTWNIDAHGYLKEISEEL 102
           P          +      +     L  E    F P   R       +D HG  +  +   
Sbjct: 161 PQLAQPA--PSSQTPFLDLLQQIELPLEQIPSFQPDQDRIAPLIGYVDRHGAYRFNNPAY 218

Query: 103 PKTIGNYAFKMIGMRLCDVS-DILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPI 161
                    ++ G R+ +V  +  +    +HI   L        +T +   +     V +
Sbjct: 219 QAWFQRPLSQITGSRVAEVWGETAYQQFYDHIHQALL-GQAVAFETVISLEDQPIRSVAV 277

Query: 162 DLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKE- 220
           +    P  + + E  GF  F  +     +       +   ++F+ + +       + +  
Sbjct: 278 E--YQPDLNTDGEVQGF--FSFISDISTNKKLTVAVQESKQRFNAIFQTSSSPMVITRLN 333

Query: 221 KYDIFSQQSPPPH------LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQED 274
              I        H      + + N+       +   +D     +     S  S    +  
Sbjct: 334 DGLILEVNESFRHLLGYQRVELVNQPIQDLNIFVDLNDRAAMVRALKKQSYVSDYELEIR 393

Query: 275 FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF 334
             +              L N+        +  N         E E      ++       
Sbjct: 394 TKSGETIFVICSMTLIVLSNSLCGFTVIHNINNRKIYERKLKESEERLQIVIENLNEGIV 453

Query: 335 VYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK----PVMLYRS 389
           +    GNLF+ N   L +  + ++++                 DN  ++    P+     
Sbjct: 454 LSDLDGNLFHWNRVALAMHGFANMEECRSRIPDFKDFYEISTLDNQVLEIEQWPMSRLIR 513

Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449
                +   ++  I           +      +    ++       +  + +  + K+  
Sbjct: 514 GEILESIELKIRRINTPVVWERIFRYGGATVIDSSGHSVAFL-TINDITERKYAEEKLRY 572

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT---- 505
           +   L  +    SD I   +   +I S NRA  +++ +   + + + F   +        
Sbjct: 573 QANLLAYV----SDAIISTDSNYVIKSWNRAAEEIYEWQAHEAIGQRFGSLIPTEYIHND 628

Query: 506 --PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDI 561
                      +          +        +   +   + + K              DI
Sbjct: 629 SNEQAGTQLFEQAFWQGEVYQFD-----RYGQRHHILSSVSLIKNNHGQIQGTVAINRDI 683

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFL 589
           + +KQ    L  +++  +  +      +
Sbjct: 684 TAYKQATQALQESERRFKILTESLPQLI 711



 Score =  105 bits (261), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 67/535 (12%), Positives = 150/535 (28%), Gaps = 57/535 (10%)

Query: 79  IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK 138
            P  +   W   A       +++  + +GN        +    +D       + I   ++
Sbjct: 57  APIPMALIW---AASQTTFYNDDYIELLGNNHP----QQQAQTTDPAGYFGQHAIFSAIQ 109

Query: 139 RQNTWYGKTTLWP-IEGTNLYVPIDLAALPIYSRNREFSGFRGFG-----IVHVNRVDND 192
           +      K      I+    +  IDL+  PIY+ +    G          +  + +    
Sbjct: 110 QAQLGQTKLLTAHSIDQPQQHWLIDLSFSPIYAEHGTIVGVLNTVNQINRVPQLAQPAPS 169

Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD 252
            +     L ++     E        +     +          R  N              
Sbjct: 170 SQTPFLDLLQQIELPLEQIPSFQPDQDRIAPLIGYVDRHGAYRFNNPAYQAWFQRPLSQI 229

Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL--------- 303
                       E +     +  H   L Q    +   +L++    S             
Sbjct: 230 TGSRVAEVW--GETAYQQFYDHIHQALLGQAVAFETVISLEDQPIRSVAVEYQPDLNTDG 287

Query: 304 ----------SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLL 351
                         +  L+    E +            P  +     G +   N SF  L
Sbjct: 288 EVQGFFSFISDISTNKKLTVAVQESKQRFNAIFQTSSSPMVITRLNDGLILEVNESFRHL 347

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411
             Y+ V+ +        +            +  M+    +    +   L     + E   
Sbjct: 348 LGYQRVELVNQPIQDLNIFVDLN------DRAAMVRALKKQSYVSDYELEIRTKSGETIF 401

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471
            +  +          ++    +     + +I +RK++    +L  ++E  ++GI + + +
Sbjct: 402 VICSMTLIV---LSNSLCGFTVIHNINNRKIYERKLKESEERLQIVIENLNEGIVLSDLD 458

Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL- 530
           G +   NR    + G+   +  R     F +    S +++ + EI    + + +    L 
Sbjct: 459 GNLFHWNRVALAMHGFANMEECRSRIPDFKDFYEISTLDNQVLEIEQWPMSRLIRGEILE 518

Query: 531 -----GSTKEEKLLSLRI------IIKKLPFSSCYSLTMHDISEWKQEKNKLSHA 574
                       ++  RI       +      S   LT++DI+E K  + KL + 
Sbjct: 519 SIELKIRRINTPVVWERIFRYGGATVIDSSGHSVAFLTINDITERKYAEEKLRYQ 573



 Score = 47.7 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 35/308 (11%), Positives = 84/308 (27%), Gaps = 22/308 (7%)

Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPS 347
             G +     +S ++  H   P           L+       P+   +++     + N  
Sbjct: 18  RNGGIAGAMLQSIDWAKHPLGPIDQWPSALQTALSMVLYAPIPMA-LIWAASQTTFYNDD 76

Query: 348 FLLLTKYKSVD------DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401
           ++ L             D     G   +  A + +     K +  +  D+        L 
Sbjct: 77  YIELLGNNHPQQQAQTTDPAGYFGQHAIFSAIQQAQLGQTKLLTAHSIDQPQQHWLIDLS 136

Query: 402 TIQWNRENSLAM-TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV------MQL 454
                 E+   +       + N+ P+               + + ++ +E        Q 
Sbjct: 137 FSPIYAEHGTIVGVLNTVNQINRVPQLAQPAPSSQTPFLDLLQQIELPLEQIPSFQPDQ- 195

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
               +  +  I  ++R G     N A    F  P+  I          +        ++ 
Sbjct: 196 ----DRIAPLIGYVDRHGAYRFNNPAYQAWFQRPLSQITGSRVAEVWGETAYQQFYDHIH 251

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLS 572
           + L L      E +     +  + +++              +   + DIS  K+    + 
Sbjct: 252 QAL-LGQAVAFETVISLEDQPIRSVAVEYQPDLNTDGEVQGFFSFISDISTNKKLTVAVQ 310

Query: 573 HAKKIAEK 580
            +K+    
Sbjct: 311 ESKQRFNA 318


>gi|218554787|ref|YP_002387700.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli IAI1]
 gi|218695831|ref|YP_002403498.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli 55989]
 gi|260844821|ref|YP_003222599.1| hybrid sensory kinase RcsC in two-component regulatory system with
           RcsB and YojN [Escherichia coli O103:H2 str. 12009]
 gi|300818176|ref|ZP_07098388.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 107-1]
 gi|300822674|ref|ZP_07102812.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 119-7]
 gi|300926329|ref|ZP_07142129.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 182-1]
 gi|301328715|ref|ZP_07221768.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 78-1]
 gi|309793104|ref|ZP_07687532.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 145-7]
 gi|73856217|gb|AAZ88924.1| sensor for ctr capsule biosynthesis [Shigella sonnei Ss046]
 gi|218352563|emb|CAU98342.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli 55989]
 gi|218361555|emb|CAQ99146.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli IAI1]
 gi|257759968|dbj|BAI31465.1| hybrid sensory kinase RcsC in two-component regulatory system with
           RcsB and YojN [Escherichia coli O103:H2 str. 12009]
 gi|300417606|gb|EFK00917.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 182-1]
 gi|300524874|gb|EFK45943.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 119-7]
 gi|300529320|gb|EFK50382.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 107-1]
 gi|300844863|gb|EFK72623.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 78-1]
 gi|308123390|gb|EFO60652.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 145-7]
 gi|323171896|gb|EFZ57540.1| sensor kinase protein rcsC [Escherichia coli LT-68]
 gi|323176864|gb|EFZ62454.1| sensor kinase protein rcsC [Escherichia coli 1180]
 gi|324020897|gb|EGB90116.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 117-3]
          Length = 933

 Score =  303 bits (777), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 99/495 (20%), Positives = 186/495 (37%), Gaps = 41/495 (8%)

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
             P+   +             + LT  +S    +                    + ++L 
Sbjct: 223 TLPMGVTILDENGHT-----LISLTGPESKIKGDPRWMQERSWFGY----TEGFRELVLK 273

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV---DTRINK 444
           ++      +      +    E    +              +       E         + 
Sbjct: 274 KNLPPSSLSIVYSVPVDKVLERIRMLILNAILLNVLAGAALFTLARMYERRIFIPAESDA 333

Query: 445 RKMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            ++E        I+ +   GI I+   +G+ + +N            +  ++        
Sbjct: 334 LRLEEHEQFNRKIVASAPVGICILRTADGVNILSNELAHTYLNMLTHEDRQR-------- 385

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                    LT+I+       ++      T     L +  +  +    +     + D+S 
Sbjct: 386 ---------LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSS 432

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + +  L    + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R 
Sbjct: 433 RVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR- 490

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
                 ++ S +L+L I++D+LD SKIES ++ +     S  E ++   +        K+
Sbjct: 491 --LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQ 548

Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           + +      ++P  +  D   ++Q+  N+LSNAI FT +G  I++       + + +RVR
Sbjct: 549 LGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG-CIVLHVR-ADGDYLSIRVR 606

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTGVG+   E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+
Sbjct: 607 DTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGS 666

Query: 803 LIEIIFPLYDTSHPH 817
              +  PLY   +P 
Sbjct: 667 QFTVRIPLYGAQYPQ 681


>gi|312885206|ref|ZP_07744885.1| aerobic respiration control sensor protein ArcB [Vibrio
           caribbenthicus ATCC BAA-2122]
 gi|309367146|gb|EFP94719.1| aerobic respiration control sensor protein ArcB [Vibrio
           caribbenthicus ATCC BAA-2122]
          Length = 781

 Score =  303 bits (777), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 85/403 (21%), Positives = 166/403 (41%), Gaps = 19/403 (4%)

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
               +         +E E       + ++      L S ++A+ D I   N +G+    N
Sbjct: 122 RIKAEEAREEAMQDLENEVYQRERTQVELAERTALLRSFIDASPDLIYYRNAQGVFSGCN 181

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
           +A+ KL G P   ++         +     +     ++ + +   T E+           
Sbjct: 182 KAMEKLTGKPENQLVGLTPWDVYSKEVAQQIVDTDQKVFAENTSLTYEQWLEYPDGRRNY 241

Query: 539 LSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
             LR +                 DI+E K+ +  L       E+ S  K+ F++ +SHE+
Sbjct: 242 FELRKVPFYSKDGRHLGLVGFGRDITERKRHEESL-------EQASRDKTTFISTISHEL 294

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTPL  I+G S ++ +       N         I+ S   + +I +D++D+ K +  K+ 
Sbjct: 295 RTPLNGIVGLSRMLLDSPL----NEEQRHQMQTINVSAITLGNIFSDIIDMDKFDRRKLE 350

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNA 715
           L    ++  + ++E  S+  L A++K +       + +P  I  D   ++Q+  N++SNA
Sbjct: 351 LFPSSLNFGDFIAEIESISALMASQKGLRFDMERLSELPLSIDIDATRLRQVLWNLISNA 410

Query: 716 IHFTPSGG--QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS-QQIRGE 772
           + FT  GG    + S   +    + + V D+G+G+   EL+K    + Q+ +    +   
Sbjct: 411 MKFTKEGGVVVSVSSEVVSEVAHITIEVEDSGIGIPASELDKIFAMYYQVKSGEDNLHAV 470

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF--PLYDT 813
           GTG+GL ++K +++   G   + S    G+   I    PL   
Sbjct: 471 GTGIGLAVSKQLINMMKGDIQVSSEEGFGSTFVISIEAPLSKV 513



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/204 (12%), Positives = 58/204 (28%), Gaps = 10/204 (4%)

Query: 19  KGNTQDLSKKKIDN----GFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTF 74
           +   Q+L++K  +N      E E+  K     +   Q    +  Q   +     +     
Sbjct: 98  RSRDQELNQKLQNNISQLNLEIEERIKAEEAREEAMQDLENEVYQRERTQVELAERTALL 157

Query: 75  VFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHI 133
                       +  +A G     ++ + K  G    +++G+   DV          +  
Sbjct: 158 RSFIDASPDLIYYR-NAQGVFSGCNKAMEKLTGKPENQLVGLTPWDVYSKEVAQQIVDTD 216

Query: 134 GDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193
             +     +   +  L   +G       +L  +P YS++    G  GFG           
Sbjct: 217 QKVFAENTSLTYEQWLEYPDGR--RNYFELRKVPFYSKDGRHLGLVGFG--RDITERKRH 272

Query: 194 RALGKRLDKKFSHLHEIKKGHSSV 217
               ++  +  +            
Sbjct: 273 EESLEQASRDKTTFISTISHELRT 296



 Score = 40.4 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/160 (10%), Positives = 39/160 (24%), Gaps = 14/160 (8%)

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365
                     E   L    +D  P   +   + G     N +   LT       + +   
Sbjct: 142 QRERTQVELAERTALLRSFIDASPDLIYYRNAQGVFSGCNKAMEKLTGKPENQLVGLTPW 201

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW---NRENSLAMTFIPFEKAN 422
                        +      +  +D+   A +  L   QW                   +
Sbjct: 202 ----------DVYSKEVAQQIVDTDQKVFAENTSLTYEQWLEYPDGRRNYFELRKVPFYS 251

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
           +   ++   G   +  + + ++  +E       + +   S
Sbjct: 252 KDGRHLGLVGFGRDITERKRHEESLEQASRDKTTFISTIS 291


>gi|227823897|ref|YP_002827870.1| sensory transduction histidine kinase [Sinorhizobium fredii NGR234]
 gi|227342899|gb|ACP27117.1| sensory transduction histidine kinase [Sinorhizobium fredii NGR234]
          Length = 827

 Score =  303 bits (777), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 130/721 (18%), Positives = 254/721 (35%), Gaps = 43/721 (5%)

Query: 109 YAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALP- 167
              + +G    +             G  +K Q+    +  +  +        + L     
Sbjct: 119 ERPEFLGQLPLETGAPQDDRDFLAFGRWIKPQSAGQLEKAIEALRAQAQSFDLVLETQRN 178

Query: 168 -IYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFS 226
            +       SG R F  V      N+ RA    L      LH       ++         
Sbjct: 179 EVLEAQGRVSGGRAF--VRFI-ALNNLRAELAELKLDRDQLHVSLSTFRTLLDAIDLPVW 235

Query: 227 QQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL--------PEQEDFHTI 278
           Q+     L   N+  +               +  L T+    +        P ++   T+
Sbjct: 236 QRGADGKLEWVNEAYAEAVDARSPAAAASEGRELLATAAREKIRAVSSFETPFRDKLSTV 295

Query: 279 NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH 338
                T        + ++  +   +      ++            ET+D    P  ++  
Sbjct: 296 VKGNRTFFDVVDA-RTHAGSAGIAIDVSGIEAVREELARTLKSHAETLDHLATPVAIFDG 354

Query: 339 -GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397
              L + N +F  L +   +  +E       +LD  +  +    +               
Sbjct: 355 NQRLQFYNQAFQRLWEL-DMGFLERKPDNGEVLDRLRAGNKLPEQLNWKQWK-------- 405

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
           A   ++    +    +  +P  +  +        G      +    K  +EI    L  +
Sbjct: 406 ANALSVYQALDTQSDLWHLPNGQTLRVFATARPQGGATWVFENLTEKVDLEIRYNTLVQV 465

Query: 458 ----LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTV----FLEQNTPSV 508
               ++  ++G+A+   +G I  +N A   ++G    +              L       
Sbjct: 466 QGETIDHLAEGVAVFGPDGRIRLSNPAFRAIWGISEVEAKPGTHIRAVEQACLSSYDQPD 525

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568
                  I++    +      +   +   +L   +I      +    LT  +I++  + +
Sbjct: 526 GWKRFAHIITSFDDERPSSRGILELRTGLILDYAVIPLPNAQT---MLTFVNITDSVRVE 582

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
             L+   +   K  + K+DF+  VS+E+R+PLT IIGF++++K   FG L N R  EY +
Sbjct: 583 RALTEKNEALRKADALKNDFVHHVSYELRSPLTNIIGFADLLKTPAFGAL-NDRQAEYVD 641

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
           +I  S  L+L IVND+LD++ +++G + L    V+L + + +    +     E    +R 
Sbjct: 642 HIATSSALLLTIVNDILDLATVDAGIVELDMSEVNLLDLLDDVAQQMADRLTESGASLRI 701

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748
             A+N+ RI+AD + +KQ+ + +L+NA +F P G  I +        + +  V DTG G+
Sbjct: 702 DAADNLGRIVADQQRLKQVFIKLLTNAANFAPDGSAIDLKCR-REGGDFVFSVSDTGPGI 760

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
               L      F         +  G GLGL + ++ V  + G   I S   +GT +    
Sbjct: 761 PQDVLNTVFNRFE-----SYGQRGGAGLGLSIVESFVSLHHGTVSIRSKEGEGTEVTCRI 815

Query: 809 P 809
           P
Sbjct: 816 P 816



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 35/383 (9%), Positives = 87/383 (22%), Gaps = 36/383 (9%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            W   A G L+ ++E   + +   +         ++               +    T + 
Sbjct: 234 VWQRGADGKLEWVNEAYAEAVDARSPAAAASEGRELLAT----AAREKIRAVSSFETPFR 289

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
                 ++G   +  +           R  +G  G  I          R    R  K  +
Sbjct: 290 DKLSTVVKGNRTFFDVV--------DARTHAGSAGIAI--DVSGIEAVREELARTLKSHA 339

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
              +      ++      +            L M                    +    L
Sbjct: 340 ETLDHLATPVAIFDGNQRLQFYNQAFQRLWELDMGFLERKPDNGEVLDRLRAGNKLPEQL 399

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQ-------YFGTLQNNSKESFEYLSHRNHPSLSAYF 315
             ++        +  ++                F T +     ++ + +      L   +
Sbjct: 400 NWKQWKANALSVYQALDTQSDLWHLPNGQTLRVFATARPQGGATWVFENLTEKVDLEIRY 459

Query: 316 DEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAG--GLSTLLDA 372
           +    +  ET+D       V+   G +  +NP+F  +     V+         +     +
Sbjct: 460 NTLVQVQGETIDHLAEGVAVFGPDGRIRLSNPAFRAIWGISEVEAKPGTHIRAVEQACLS 519

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
                +   +   +  S                     L + +      N          
Sbjct: 520 SYDQPDGWKRFAHIITSFDDERP----SSRGILELRTGLILDYAVIPLPNAQ-----TML 570

Query: 433 IEPEDVDTRINKRKMEIEVMQLC 455
                 D+   +R +  +   L 
Sbjct: 571 TFVNITDSVRVERALTEKNEALR 593


>gi|218778402|ref|YP_002429720.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218759786|gb|ACL02252.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 847

 Score =  303 bits (777), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 103/649 (15%), Positives = 209/649 (32%), Gaps = 59/649 (9%)

Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA--- 248
             +   +R + KF  + E       + +         S     R   +   L +      
Sbjct: 82  RSQEDIRRSEHKFRLIFENAPYAIVIFRLDDGTILDASKAFLERRGVRKKDLHKMSIMDL 141

Query: 249 ------HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302
                  K   L   +       E +   + D    +            +    +     
Sbjct: 142 VVGSEKEKQQYLDRIRREGALHNEPAKIYEPDG---SQGHIFYSTVLLEVDGELQGLSMA 198

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIE 361
           L+              E       +  P+  F  +  G L  AN +      Y++ + + 
Sbjct: 199 LNVTKQKQAQEALALSEEKFRNIFNSAPVGIFRSTFDGRLIEANDTLARFLGYENREQM- 257

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
               + +L      ++    + +         I   A    +       +          
Sbjct: 258 -LSQVESLGKEIYPNEMERQRILDALLESPEGIRMEAEYKRL---DGKPVYGIVNAKLSF 313

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
           ++       +G   +    +       +E  +L + +E +SD I I + +G+I   N A 
Sbjct: 314 DEKGNPAWLDGAIEDVTGLKQAA----METRKLAAAVEQSSDIIVITDPKGVIQYVNPAF 369

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
            K+ GY   + L +  ++             L + +            +   K+  L + 
Sbjct: 370 EKITGYSRAEALGRTPSLLKSGKHDQAFYEDLWQTILAGETWKGN--IINKRKDGSLFTE 427

Query: 542 RIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
           +  I  +         +  +  DI++    + +    +K+              V+H+  
Sbjct: 428 KATISPMVDDHGEITNFVASKRDITDELALREQNRQMQKM-----EALGRLTGGVAHDFN 482

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
             L A+ GF E +         + R   +      +G    ++V  LL  S+      ++
Sbjct: 483 NLLQAMNGFVE-LAGMDLPR--DHRSRPFLEQTLTAGRRAANLVQQLLLFSRS----KDM 535

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
            F+ + L+ AV + + +V        I ++    N+   I AD   + Q+ +N+  NA  
Sbjct: 536 QFKYMDLNTAVDDLLKMV-GRIIGTDIQVQWRPWNSSLTIHADPGMMDQVLMNLCVNARD 594

Query: 718 FTPSGGQIIISTTH--------------TSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
             P+GG + I+ +                     +L+VRDTG+GM +  L++  +PF   
Sbjct: 595 AMPNGGVLTIAASIMEADAPFCANHSWAKQGRYAVLKVRDTGMGMDDVTLDRIFEPFFTT 654

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
                  G GTGLGL  A  +V  + G   + S   +G+   I  PL +
Sbjct: 655 K----EEGRGTGLGLATAYGVVQQHGGIISVSSELGRGSEFAIFLPLVN 699



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/422 (8%), Positives = 103/422 (24%), Gaps = 30/422 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + +D  G + + S+   +  G     +  M + D+      +   ++  + +       
Sbjct: 107 IFRLD-DGTILDASKAFLERRGVRKKDLHKMSIMDLVVGSEKEKQQYLDRIRREGALHNE 165

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
              ++  +G+  ++      L +   + E    +G  +          +      ++KF 
Sbjct: 166 PAKIYEPDGSQGHIFYSTVLLEV---DGEL---QGLSMALNVTKQKQAQEALALSEEKFR 219

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
           ++                +                  +          +   +       
Sbjct: 220 NIFNSAPVGIFRSTFDGRLIEANDTLARFLGYENREQMLSQVESLGKEIYPNEMERQRIL 279

Query: 266 ESSLPEQEDFHTINLNQYTKKQ------YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
           ++ L   E        +    +            +               +         
Sbjct: 280 DALLESPEGIRMEAEYKRLDGKPVYGIVNAKLSFDEKGNPAWLDGAIEDVTGLKQAAMET 339

Query: 320 NLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
                 V++      +    G + Y NP+F  +T Y   + +         L      D 
Sbjct: 340 RKLAAAVEQSSDIIVITDPKGVIQYVNPAFEKITGYSRAEALGRTPS----LLKSGKHDQ 395

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
              + +            +           +            +   E       + +  
Sbjct: 396 AFYEDLWQTILAGETWKGNIINKR---KDGSLFTEKATISPMVDDHGEITNFVASKRDIT 452

Query: 439 DTRINKRKMEIEVMQLCSI--LEATSDGIAIINREGIILSTNRAVSKLFGYP-VEDILRK 495
           D    +  +  +  Q+  +  L   + G+A  +   ++ + N    +L G     D   +
Sbjct: 453 D----ELALREQNRQMQKMEALGRLTGGVA-HDFNNLLQAMN-GFVELAGMDLPRDHRSR 506

Query: 496 PF 497
           PF
Sbjct: 507 PF 508



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 19/169 (11%), Positives = 42/169 (24%), Gaps = 11/169 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147
            D  G ++ ++    K  G    + +G     +    H       +   +    TW G  
Sbjct: 356 TDPKGVIQYVNPAFEKITGYSRAEALGRTPSLLKSGKHDQAFYEDLWQTILAGETWKGNI 415

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK------RLD 201
                +G+       ++  P+   + E + F           +   R   +       L 
Sbjct: 416 INKRKDGSLFTEKATIS--PMVDDHGEITNF--VASKRDITDELALREQNRQMQKMEALG 471

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK 250
           +    +               ++     P  H        +LT      
Sbjct: 472 RLTGGVAHDFNNLLQAMNGFVELAGMDLPRDHRSRPFLEQTLTAGRRAA 520


>gi|167840004|ref|ZP_02466688.1| sensory box histidine kinase [Burkholderia thailandensis MSMB43]
          Length = 709

 Score =  303 bits (777), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 98/634 (15%), Positives = 216/634 (34%), Gaps = 33/634 (5%)

Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD 251
              A+ +R       L E K+   +V  E        +    +        +    A  +
Sbjct: 99  QDDAVQQRRLATLRTLLEKKQKELAVTIELRKTEGFDAAEAIVSSDAGKIFMDLARAMVN 158

Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
           ++  T +  L    + +   ++    + L                      +      + 
Sbjct: 159 EMETTVQQQLSVLRDRARATRDIAIGVGLASGLLTLVVCVSFGYVMRRLLLV----EAAA 214

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
           +    E   L   T+             G + + N     +T   +   +          
Sbjct: 215 AHDLFEQRELLHVTLASIGDGVIATDVGGRITFFNRVAEQMTSLAAAAAVGQPIEQVLTF 274

Query: 371 DAPKLSDN-NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
                    +    V + R     +   +R           L +        +   + + 
Sbjct: 275 RHAATQRVIDNPARVAVERKRTATLPVHSRFVD---RGGRELPVDGNAAPTFDAKGKLVG 331

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
              +  +  +    + +  +        +EA  + + ++ R+G I+  N    KLFGY  
Sbjct: 332 AVLVVRDVSERERAEERFRLA-------VEAAPNAMIMVGRDGRIVLVNSQAEKLFGYAR 384

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKK 547
            D++     + + +   +  + Y          + +   +   G  ++     + I +  
Sbjct: 385 GDMIGHGIDMLVPERFRAGHSAYRGAFFGKPDARPMGEGRDLFGLRRDGGEFPVEIGLNP 444

Query: 548 LPFSSCYSLT--MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
           +  S    +   + DI+  K+ + +L    +   + +     F    SH+++ PL A+ G
Sbjct: 445 ITTSEGAFVLCSIADITARKRAELELRRRSEELARSNQDLEQFAYVASHDLQEPLRAVAG 504

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
             ++++ +  G L + R  E+  +       +  +++DLL  S++  G++    +PV  +
Sbjct: 505 PLQLLQRRYQGQL-DARADEFIGHAVDGATRMQSLIDDLLSYSRV--GRLEDARQPVDGE 561

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG--G 723
            A+ EA+  +     E    I     + +P +      +  +  N++ NAI F       
Sbjct: 562 RALDEALRNLSAAIRESGAQIT---HDRLPVVHGIAAQLVLLLQNLIGNAIKFRSKDRVA 618

Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
           QI +      +  V  RVRD G+G+     E+    F ++    +    GTGLGL L K 
Sbjct: 619 QIHLEADARDDAWV-FRVRDNGIGIDPQYFERIFLIFQRLH--TRREYPGTGLGLALCKR 675

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIF--PLYDTSH 815
           +V+ + G+ ++ S P +GT        P  D +H
Sbjct: 676 IVEHHGGRIFVESEPGRGTTFSFTLSRPGADETH 709



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 35/348 (10%), Positives = 89/348 (25%), Gaps = 16/348 (4%)

Query: 2   STDSIISNPEDILTSNCKGNTQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQES 61
           +T  +I NP  +     +  T  +  + +D G        +     +F+           
Sbjct: 278 ATQRVIDNPARVAVERKRTATLPVHSRFVDRGGRELPV--DGNAAPTFDAKGKLVGAVLV 335

Query: 62  VSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV 121
           V + +  +         +         +   G +  ++ +  K  G     MIG  +  +
Sbjct: 336 VRDVSERERAEERFRLAVEAAPNAMIMVGRDGRIVLVNSQAEKLFGYARGDMIGHGIDML 395

Query: 122 SDILHIDPNNHIGDLL----KRQNTWYGKTTL-WPIEGTNLYVPIDLAALPIYSRNREFS 176
                   ++            +    G+       +G     P+++   PI +    F 
Sbjct: 396 VPERFRAGHSAYRGAFFGKPDARPMGEGRDLFGLRRDGG--EFPVEIGLNPITTSEGAFV 453

Query: 177 GFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM 236
                  +             +R  ++ +  ++  +  + V         +    P   +
Sbjct: 454 ----LCSIADITARKRAELELRRRSEELARSNQDLEQFAYVASHDLQEPLRAVAGPLQLL 509

Query: 237 KNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTK---KQYFGTLQ 293
           + +     +  A +      +    + S    L        +   +      +     L+
Sbjct: 510 QRRYQGQLDARADEFIGHAVDGATRMQSLIDDLLSYSRVGRLEDARQPVDGERALDEALR 569

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNL 341
           N S    E  +   H  L         L     +         S   +
Sbjct: 570 NLSAAIRESGAQITHDRLPVVHGIAAQLVLLLQNLIGNAIKFRSKDRV 617


>gi|312885460|ref|ZP_07745099.1| PAS/PAC sensor hybrid histidine kinase [Mucilaginibacter paludis
           DSM 18603]
 gi|311302040|gb|EFQ79070.1| PAS/PAC sensor hybrid histidine kinase [Mucilaginibacter paludis
           DSM 18603]
          Length = 648

 Score =  303 bits (777), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 100/475 (21%), Positives = 205/475 (43%), Gaps = 20/475 (4%)

Query: 346 PSFLLLTKYKSVDDIEIAGGLSTL---LDAPKLSDNNAIKPVMLYRSDRTCIAASARL-H 401
            S + L    S ++       + +   L   ++ + +  +   + +S+            
Sbjct: 25  RSDIRLLSTTSPNEALKIAWENQISIALVDVQMPEMDGFEFASMLKSNPRTKDILIIFVT 84

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT-RINKRKMEIEVMQLCS---I 457
            I    + ++             P +      + +       ++ +++ +  +L +   +
Sbjct: 85  AISKESKYAVKGFTAGAVDYLYKPLDPYITSAKVDSFIQLSRSQMEIKKKNEELENYALV 144

Query: 458 LEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           +  ++D I  ++ +   IL+ N AV K+  +  +++  K       ++        + EI
Sbjct: 145 IRNSADIICSVDAQNLRILTINPAVEKILNHRPDELKGKSILSLAFEDEQLNFKRKIDEI 204

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKK 576
           +  +L  ++       T +++   +              L + DIS  K    +L  +K+
Sbjct: 205 IKENLFFSV-FECRFETFDKRQTWVECRASYRNKI--IFLNISDISPIKSYMEELIKSKE 261

Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
           +AE     K  FLA +SHE+RTP+  I+G + ++KN +     + +     + +  S   
Sbjct: 262 LAEYGKKVKETFLANMSHELRTPVNGILGITALLKNTQL----DSQQKNMIDLLGSSSQS 317

Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP- 695
           +L ++ND+LDISKIE+GK N+  +  ++   V     L++   +EK + +    A N+P 
Sbjct: 318 LLGVINDVLDISKIEAGKFNIIRKQGNIHHIVRSVYDLLKFKTDEKDVELLLDIAPNVPS 377

Query: 696 RILADLRSVKQIALNILSNAIHFTPSG-GQIIISTTHTSNEEVI--LRVRDTGVGMTNYE 752
            ++ D   + QI +N+LSNAI FT  G  ++ +S      + V     V DTG+G+++  
Sbjct: 378 NVMVDSLRINQIMMNLLSNAIKFTDRGYVKLTVSVVQQDVDRVKLKFSVEDTGIGISSEN 437

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           L K    F Q  +    +  GTGLGL + K +V+   G+  + S   KG++    
Sbjct: 438 LNKIFDSFEQAEDDTSNKYGGTGLGLAIVKKLVELKGGELTVSSQIGKGSIFNFT 492


>gi|300948912|ref|ZP_07162974.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 116-1]
 gi|300958903|ref|ZP_07171007.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 175-1]
 gi|300314466|gb|EFJ64250.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 175-1]
 gi|300451608|gb|EFK15228.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 116-1]
 gi|309702529|emb|CBJ01856.1| two-component system sensor kinase [Escherichia coli ETEC H10407]
          Length = 933

 Score =  303 bits (777), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 99/495 (20%), Positives = 186/495 (37%), Gaps = 41/495 (8%)

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
             P+   +             + LT  +S    +                    + ++L 
Sbjct: 223 TLPMGVTILDENGHT-----LISLTGPESKIKGDPRWMQERSWFGY----TEGFRELVLK 273

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV---DTRINK 444
           ++      +      +    E    +              +       E         + 
Sbjct: 274 KNLPPSSLSIVYSVPVDKVLERIRMLILNAILLNVLAGAALFTLARMYERRIFIPAESDA 333

Query: 445 RKMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            ++E        I+ +   GI I+   +G+ + +N            +  ++        
Sbjct: 334 LRLEEHEQFNRKIVASAPVGICILRTADGVNILSNELAHTYLNMLTHEDRQR-------- 385

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                    LT+I+       ++      T     L +  +  +    +     + D+S 
Sbjct: 386 ---------LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSS 432

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + +  L    + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R 
Sbjct: 433 RVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR- 490

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
                 ++ S +L+L I++D+LD SKIES ++ +     S  E ++   +        K+
Sbjct: 491 --LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQ 548

Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           + +      ++P  +  D   ++Q+  N+LSNAI FT +G  I++       + + +RVR
Sbjct: 549 LGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG-CIVLHVR-ADGDYLSIRVR 606

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTGVG+   E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+
Sbjct: 607 DTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGS 666

Query: 803 LIEIIFPLYDTSHPH 817
              +  PLY   +P 
Sbjct: 667 QFTVRIPLYGAQYPQ 681


>gi|258621901|ref|ZP_05716931.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           mimicus VM573]
 gi|258585839|gb|EEW10558.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           mimicus VM573]
          Length = 1205

 Score =  303 bits (777), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 86/369 (23%), Positives = 156/369 (42%), Gaps = 17/369 (4%)

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG--YPVEDILRKPFTVFLEQNTP 506
            ++  L  +L+A    I I + EG ++ TN A     G  +  + +   P   FL+    
Sbjct: 548 EQIQWLTELLDAIPSMIYISDDEGDVVLTNAAYRDAMGACHANDCLNNLPDCSFLQLPDS 607

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQ 566
           S   + +   +        E       +         I   +     Y    +DI+E K+
Sbjct: 608 STSEYSVVIQIPARSCAIGEHYYHVIRRG--------IAHPINRRQYYLTLFNDITELKE 659

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
            ++ L  +   A +    ++ FLA VSHE+RTP+ A++G  E++ ++    + +      
Sbjct: 660 TESALRQSTAQALQAVEARNHFLAVVSHELRTPIAAMLGLMEILASR----IKSNESQLL 715

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
                 S   +   VND+LD SKIE+ ++ L      L + +   +   +  A+ + +  
Sbjct: 716 LTNAITSAERLKMHVNDILDFSKIEAQQLQLDVATYHLADELCPLLRSFEATADLQGLDF 775

Query: 687 RTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
             ++  +    +  D   + QI  N+LSNA+ FT  G  I I    +        V DTG
Sbjct: 776 IVNWQPDARLLVQVDALRLNQIITNLLSNALKFTEKGS-IRICVEQSEQ-HFTFEVTDTG 833

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
            GMT  ++    +PF Q  +S   R  GTGLG+ +   +V+   G  ++ S   +GT + 
Sbjct: 834 CGMTEPQIASIFQPFVQADSSITRRFGGTGLGMSIVANLVELMGGHIHVESEIDQGTTVR 893

Query: 806 IIFPLYDTS 814
           +  P+   +
Sbjct: 894 VSLPVVGEA 902


>gi|238751334|ref|ZP_04612827.1| Aerobic respiration control sensor protein arcB [Yersinia rohdei
           ATCC 43380]
 gi|238710392|gb|EEQ02617.1| Aerobic respiration control sensor protein arcB [Yersinia rohdei
           ATCC 43380]
          Length = 799

 Score =  303 bits (777), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 77/374 (20%), Positives = 161/374 (43%), Gaps = 16/374 (4%)

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
                + ++  +   L S L+A+ D +   N        NRA+  L G   + ++     
Sbjct: 163 HREQAQVELGQQSALLRSFLDASPDLVYYRNEANEFSGCNRAMELLTGKSEKQLVGLTPK 222

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII--KKLPFSSCYSL 556
                +    +     ++   ++  T E+  +     +    LR +    ++        
Sbjct: 223 DVYAPDIAEKVMETDEKVFRHNVSLTYEQWLVYPDGRKACFELRKVPFYDRVGKRHGLMG 282

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
              DI+E K+ ++ L +        S  K+ F++ +SHE+RTPL  I+G S ++ +    
Sbjct: 283 FGRDITERKRYQDALEN-------ASRDKTTFISTISHELRTPLNGIVGLSRILLDTEL- 334

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
              +   ++Y   I  S   + +I ND++++ K+E  K+ L  +P+     +++  +L  
Sbjct: 335 ---DSEQLKYLKTIHVSAITLGNIFNDIIEMDKLERRKVQLDNQPIDFTGFMADLENLSG 391

Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
           L    K +         +P  ++ D   ++QI  N++ NA+ FT  G +I++      ++
Sbjct: 392 LLVQPKGLKFILEPQLPLPEKVITDGTRLRQILWNLIGNAVKFTQHG-KIVLRVWREGSD 450

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ-IRGEGTGLGLPLAKAMVDANMGKFYI 794
            +I  V D+G+G+   E +K    + Q+ +S       GTG+GL ++K +  +  G   +
Sbjct: 451 RLIFEVEDSGMGIPEDEQDKIFAMYYQVKDSNGGRPATGTGIGLAVSKRLAQSMGGDITV 510

Query: 795 FSTPAKGTLIEIIF 808
            ST   G+   +  
Sbjct: 511 KSTQGVGSCFTLTI 524



 Score = 42.3 bits (98), Expect = 0.33,   Method: Composition-based stats.
 Identities = 16/124 (12%), Positives = 35/124 (28%), Gaps = 5/124 (4%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN-TWYGKTTLWPIE 153
               +  +    G    +++G+   DV      +      + + R N +   +  L   +
Sbjct: 198 FSGCNRAMELLTGKSEKQLVGLTPKDVYAPDIAEKVMETDEKVFRHNVSLTYEQWLVYPD 257

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
           G       +L  +P Y R  +  G  GFG           +   +   +  +        
Sbjct: 258 GRKACF--ELRKVPFYDRVGKRHGLMGFG--RDITERKRYQDALENASRDKTTFISTISH 313

Query: 214 HSSV 217
               
Sbjct: 314 ELRT 317



 Score = 41.2 bits (95), Expect = 0.68,   Method: Composition-based stats.
 Identities = 23/228 (10%), Positives = 53/228 (23%), Gaps = 14/228 (6%)

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ----EDFHTINLNQYTKKQYFGTLQNN 295
           +S + E        L      L       L       E+   +N     +++     Q  
Sbjct: 94  LSVVVEQLEESRQRLSRLVDKLEVMRHRDLELNKQLTENIAQLNQEIVEREKAEKAHQQV 153

Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKY 354
             +  E + H           +   L    +D  P   +           N +  LLT  
Sbjct: 154 VDKLKEEMGH--REQAQVELGQQSALLRSFLDASPDLVYYRNEANEFSGCNRAMELLTGK 211

Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
                +        L      + + A K +           +      + +         
Sbjct: 212 SEKQLVG-------LTPKDVYAPDIAEKVMETDEKVFRHNVSLTYEQWLVYPDGRKACFE 264

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
                  ++  +     G   +  + +  +  +E       + +   S
Sbjct: 265 LRKVPFYDRVGKRHGLMGFGRDITERKRYQDALENASRDKTTFISTIS 312


>gi|238764141|ref|ZP_04625095.1| Signal transduction histidine-protein kinase atoS [Yersinia
           kristensenii ATCC 33638]
 gi|238697678|gb|EEP90441.1| Signal transduction histidine-protein kinase atoS [Yersinia
           kristensenii ATCC 33638]
          Length = 624

 Score =  303 bits (777), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 95/374 (25%), Positives = 171/374 (45%), Gaps = 28/374 (7%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           R +         ILE+ +DG+  ++  G +   N A   + GY  ++++ KP+    E+ 
Sbjct: 271 RALRETKTLNELILESAADGVISVDINGCVTMINPAGELITGYNRKELMGKPYAEVFEKI 330

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHD 560
                   L  +        LE    G     + + L I   +L  +            D
Sbjct: 331 DFDS--PVLDTLYRGIEHVALELDYPGKN---RTIQLSISTSQLRNAQGDTLGALAIFTD 385

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           ++  K+ + ++  A+++A        + +A V+HE+R PLTAI GF +++K+       +
Sbjct: 386 LTAKKEVQRRIEQAERLAT-----LGELMAGVAHEVRNPLTAISGFVQILKD----SEKD 436

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
           P+ +EY + I +    +  ++  LLD S+   G+    +  V+L++ + E++ LV+    
Sbjct: 437 PQRLEYTHIILKEVQSINRVIQQLLDFSRPRIGR----YHQVNLNQILRESLILVKTKGV 492

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
           E R+        N+  I AD   +KQ+ LNIL NA+    + G+IIIST    +    + 
Sbjct: 493 EARVDFHVQLDENLSDIEADGELLKQVLLNILINAVQSITARGEIIISTQTLDDNYQQIT 552

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V+D G G+ +    K   PF     S      GTGLGL +++ ++ ++ G   + S P K
Sbjct: 553 VKDNGCGIADDIKSKVFDPFYTTKPS------GTGLGLSISQRIIASHDGDIRLESQPNK 606

Query: 801 GTLIEIIFPLYDTS 814
           GT   II P+   +
Sbjct: 607 GTTFIIILPVKHGA 620



 Score = 46.6 bits (109), Expect = 0.019,   Method: Composition-based stats.
 Identities = 27/198 (13%), Positives = 61/198 (30%), Gaps = 9/198 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D +G +  I+       G    +++G    +V + +  D    + D L R         
Sbjct: 294 VDINGCVTMINPAGELITGYNRKELMGKPYAEVFEKIDFDSP--VLDTLYRGIEHVALEL 351

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
            +P  G N  + + ++   + +   +  G     I        + +   ++ ++  +   
Sbjct: 352 DYP--GKNRTIQLSISTSQLRNAQGDTLGA--LAIFTDLTAKKEVQRRIEQAERLATLGE 407

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
            +      V      I              +    T     +   +      LL     S
Sbjct: 408 LMAGVAHEVRNPLTAISGFVQILKDSEKDPQRLEYTHIILKEVQSINRVIQQLLDF---S 464

Query: 269 LPEQEDFHTINLNQYTKK 286
            P    +H +NLNQ  ++
Sbjct: 465 RPRIGRYHQVNLNQILRE 482


>gi|168177679|ref|ZP_02612343.1| sensory box histidine kinase [Clostridium botulinum NCTC 2916]
 gi|182671415|gb|EDT83389.1| sensory box histidine kinase [Clostridium botulinum NCTC 2916]
          Length = 615

 Score =  303 bits (777), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 92/397 (23%), Positives = 173/397 (43%), Gaps = 11/397 (2%)

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
           +  +   N+  N ++ +++  R  ++ +         ++  + D I +  R G I+  N 
Sbjct: 192 RQKEEEVNILANKLDQKEMQKRCMEQLLIKNENCYNLLIRNSKDAILVH-RYGKIIFANE 250

Query: 480 AVSKLFGYPVED-ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
            + ++ GY  E           + ++  +++   L  + S      ++        + K 
Sbjct: 251 RLKQMLGYKKEYNFEDIDIKSLIPEDQYNIVKDQLKNLYS-GSEDIVKFQHNVINNKGKT 309

Query: 539 LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK------SDFLARV 592
           +                  +HD++   Q +      KK  E  +  +      ++FL+ +
Sbjct: 310 IQNTSTYVIYDGIPTIFSILHDVTSKIQVEKLEQDVKKNIELLNESREYNKLITEFLSNI 369

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHE++TPL  I    + +         N +  +Y   I ++   ++ ++N+LLD +K++S
Sbjct: 370 SHELKTPLNVIFTAVQ-LLGFYEEDCNNEKQDKYLKLIKQNCYRLMKLINNLLDTTKLDS 428

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712
           G + L+    ++   + E    V  YA  K I I          I  D   +++I LN+L
Sbjct: 429 GYLKLNLVNYNIVNLIEEITLSVTSYAESKGINIIFDTNVEEKIIAVDTDKIERIILNLL 488

Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           SN+I FT  GG I ++    S E V + V+DTGVG+ + +LE   + F Q+  + +   E
Sbjct: 489 SNSIKFTNPGGNIFVNVK-DSGENVYIHVKDTGVGIPSDKLESIFERFFQVDKTLKKNKE 547

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GTG+GL L K+ V+ + G   I S   KGT   I  P
Sbjct: 548 GTGIGLHLVKSFVEMHNGTVTIKSELGKGTEFIIKLP 584


>gi|255008850|ref|ZP_05280976.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
 gi|313146595|ref|ZP_07808788.1| two-component system sensor histidine kinase/response regulator
           [Bacteroides fragilis 3_1_12]
 gi|313135362|gb|EFR52722.1| two-component system sensor histidine kinase/response regulator
           [Bacteroides fragilis 3_1_12]
          Length = 895

 Score =  303 bits (777), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 134/742 (18%), Positives = 256/742 (34%), Gaps = 60/742 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK--RQNTWYGK 146
           +D +G   +I             K++G  L       ++ P++    LL   R+ T  G 
Sbjct: 25  VDKNGTCLDIDP-HSDLWFLQEDKLLGKNL------FNLLPDHTFQKLLPDFRRVTQQGI 77

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFS----GFRGFGIVHVNRVDNDPRALGKRLDK 202
           T        N  +P++            F      + G  ++   R       +  +L++
Sbjct: 78  TV-----NRNYRLPLE------GDETYYFKCIMQPYDGDKVLCQYRDITARSNVKLQLER 126

Query: 203 KFSHLHEIKKGHSSVE-----KEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257
               L EI+K     +     +EK   +   +       +  ++    Y     + L   
Sbjct: 127 TNYELKEIQKAAQIGQWKYSSREKTFYYRGYNGIVCTEEERSINFQDYYETILSEDLPAV 186

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH-PSLSAYFD 316
              +  +    + E  ++  +   Q    +    L+   ++    L       +      
Sbjct: 187 NTWMEANRRKLVKEYIEYRILLEGQVYYMRQQCYLRGEEEDGNIILEGYIQNITDIQRKR 246

Query: 317 EGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
              N     ++      +     G L +AN  F L  +     D+              +
Sbjct: 247 NDINTLTHAINNAKESIYAARKDGTLIFANRQFRLNHRIAEQADLSQIRIFD---IVGDM 303

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
                 +       +       A           +   T       +             
Sbjct: 304 DGPKDWEERYHSIREGQNFNFLAYHPLKHDKSTLAFEGTMYSVTTDDGEETFWSF---TH 360

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN--REGIILSTNR-AVSKLFGYPVEDI 492
           +  +    + +++     + + +E    GI + +   +   +  NR + ++      E+ 
Sbjct: 361 DISERIRYESQIKRLNRIMDTTMENLPAGIVVKDIENDFRYIYRNRESYNR--DISAENA 418

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR---IIIKKLP 549
           +      +              EI +      +  I  G  K   LL L    II++   
Sbjct: 419 IGMNDFDYYPLEMAQQKRKEDMEIANTGK--GMHWIMEGKDKNGNLLILDKQKIIVESED 476

Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
           FS        DI++ +  + +L  +K+ AE     KS FLA +SHEIRTPL AI+GFS +
Sbjct: 477 FSPIIVSIEWDITQLELMRRELMESKEKAETSDKLKSAFLANMSHEIRTPLNAIVGFSRI 536

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           I              EY   +D +   +L ++N++LD+SKIESG +   + PV L     
Sbjct: 537 ISE----SENPEERKEYYEIVDANNERLLQLINEILDLSKIESGIVEFTYGPVKLHTLCK 592

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
           E          +  + ++    +    I +D   + Q+  N++ NA  FT  G    +S 
Sbjct: 593 EIHDAHVFRCPQ-GVELKFDSPDEALSIHSDKNRIFQVFSNLIGNAFKFTTQGS---VSY 648

Query: 730 THTSNEE-VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
            +    E V+  V+DTG+G+   +L +  + F ++ N      +GTGLGL + K +++  
Sbjct: 649 GYRQEAEKVVFYVKDTGLGIEPEKLGRVFQRFAKLNNF----AQGTGLGLSICKTIIERL 704

Query: 789 MGKFYIFSTPAKGTLIEIIFPL 810
            G+  + S    GT      PL
Sbjct: 705 GGEISVSSEVGTGTTFTFWLPL 726



 Score = 45.8 bits (107), Expect = 0.034,   Method: Composition-based stats.
 Identities = 17/128 (13%), Positives = 37/128 (28%), Gaps = 4/128 (3%)

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           IL+ T+D + ++++ G  L  +   S L+    + +L K     L  +T   +      +
Sbjct: 14  ILQLTADTLILVDKNGTCLDIDPH-SDLWFLQEDKLLGKNLFNLLPDHTFQKLLPDFRRV 72

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKK 576
               +             E       +                DI+     K +L     
Sbjct: 73  TQQGITVNRNYRLPLEGDETYYFKCIMQPY---DGDKVLCQYRDITARSNVKLQLERTNY 129

Query: 577 IAEKESSH 584
             ++    
Sbjct: 130 ELKEIQKA 137


>gi|298529632|ref|ZP_07017035.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511068|gb|EFI34971.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 400

 Score =  303 bits (777), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 85/396 (21%), Positives = 159/396 (40%), Gaps = 30/396 (7%)

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
              +  +  + +   RK E    ++ +IL+  +D + +++    I+S N    + F  P 
Sbjct: 21  FQELRQKIEELKEANRKSEERRREIAAILDGITDVMMVLSENLRIISVNHVFHEFFDEPR 80

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
            +   K                     ++ D   ++ + T       + L   ++   L 
Sbjct: 81  PE--GKFCYQLFRGEDYPCPECPAFRSMATD---SVCRDTAIFKLGGRNLQFEMVASPLK 135

Query: 550 ----FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
                 +   +   D++  K+ + K    +K+A           A V+HE+  P+ AI G
Sbjct: 136 NKEWEENRVLIFKRDVTLEKEYQAKYYQVEKMATIGM-----LAAGVAHEVNNPMAAING 190

Query: 606 FSEVIKNQ------RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           F+E ++ +         P     + EY + I +       I+  LL  S+      +  F
Sbjct: 191 FAEGLRRRIPRIEKSVDPELAQDFREYTDIILKECKRCQKIIQTLLTFSRP----KHFSF 246

Query: 660 EPVSLDEAVSEAISLVQLYA-NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718
            P++L+  V+E + LV       K + ++    + +P I AD   +KQ+ LN+L NA   
Sbjct: 247 SPINLNRVVNETLRLVDHSLRKRKGLKVKLDLQDGLPLINADESQLKQVILNLLVNAKDA 306

Query: 719 TPSGGQIIIST-THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
               G I I T       EV L V D G G+   +++K  +PF          G+G G+G
Sbjct: 307 IQDKGLITIKTSAFEHENEVCLCVEDDGCGIDPDKMDKLFEPFFTTKP----VGKGIGIG 362

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
           L     +V+++ G+  + S P KG+   +  PL  +
Sbjct: 363 LASCYNIVESHGGEISVTSEPGKGSRFTVCLPLNPS 398


>gi|53721153|ref|YP_110138.1| histidine kinase/response regulator fusion protein [Burkholderia
           pseudomallei K96243]
 gi|52211567|emb|CAH37562.1| putative histidine kinase/response regulator fusion protein
           [Burkholderia pseudomallei K96243]
          Length = 1014

 Score =  303 bits (777), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 126/677 (18%), Positives = 232/677 (34%), Gaps = 59/677 (8%)

Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH 233
           +F   +G+ ++H  +      A+G     +          + ++ + +  +   QSP P 
Sbjct: 111 QFDAHQGYAVLHTPQGAPAALAVGIPAPGRS---ASAFAPYLALLETQLLMGDGQSPLPD 167

Query: 234 LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293
            R++    S    Y       + +         S+                 +     + 
Sbjct: 168 DRVEGYSFSPDGTYLSLLWSREDQAPEAFIESHSASGL---IGDAMRGIRYLRDASTIVP 224

Query: 294 NNSKESFEYLSHRNHP--------SLSAYFDEGENLTPETVDKCPIPFF----------- 334
             +     +L     P         +    D    L    V   P+  F           
Sbjct: 225 LRADRRTVWLPPHPDPLTGKPMIRIVQPAIDATGKLFAIYVRSLPLDMFYSNLNDAPAGS 284

Query: 335 ----VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390
               V   GN+   + +        +   + I       L           +  M   SD
Sbjct: 285 TLTIVDRKGNVILGSSNQHGGDGGATASALGI-----RSLGDGFGGLVERYQDGMFVTSD 339

Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR------INK 444
           +        +H   W    + A+              +    +     D +         
Sbjct: 340 QLPGTDWVLVHAYSWK-TIAAALALRFSLVTGLVAGIIVMLWLFAIQFDRKGLIPNYRRA 398

Query: 445 RKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
           +++    +   +IL     G+ +++  +G +L  N A+ +L     ++ L          
Sbjct: 399 QRLLESEVLNRTILRTAPVGLGLLSAQDGSVLLQNNAMLELSARTSDEPLPIRLWEAYRH 458

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                 +               +            L   ++  +   ++    T+ DIS 
Sbjct: 459 AVGRSSDE-------DGALLQHDLAIEREGANPVYLQANVVAARYRGANVLLCTLLDISL 511

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            K+ + KL  A+  A++ +  KS FLA +SHEIRTPL AIIG  E+++        + + 
Sbjct: 512 RKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPL----SEQQ 567

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            E  + ++   N +L I+ND+LD+SK+ESG+M L   P  +   + E +      A  K 
Sbjct: 568 SERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAYAPLAESKG 627

Query: 684 ILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIST----THTSNEEVI 738
           + + +S    + R    D   ++Q+  N++ NAI FT  G  I I             + 
Sbjct: 628 LALLSSIGEGVARHYAGDPTRIRQVLSNLIGNAIKFTERG-HISIDVHRAKAARDGSAIE 686

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           + V DTG+G+    +      + Q   S   R  G+GLGLPL + +V    G   I S P
Sbjct: 687 IWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLP 746

Query: 799 AKGTLIEIIFPLYDTSH 815
             GT + +  PL +  H
Sbjct: 747 DFGTTVTVALPLREARH 763


>gi|262165828|ref|ZP_06033565.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           mimicus VM223]
 gi|262025544|gb|EEY44212.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           mimicus VM223]
          Length = 1194

 Score =  303 bits (777), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 85/368 (23%), Positives = 152/368 (41%), Gaps = 15/368 (4%)

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF-TVFLEQNTPS 507
            ++  L  +L+A    I I + EG ++ TN A     G    +            Q   S
Sbjct: 539 EQIQWLTELLDAIPSMIYISDDEGDVVLTNAAYRDAMGACHANDCLNNLPDCSFLQLPDS 598

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQE 567
             + Y   I        + +      +         I   +     Y    +DI+E K+ 
Sbjct: 599 STSEYSVVIQIPARPCAIGEHYYHVIRRG-------IAHPINRRQYYLTLFNDITELKET 651

Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
           ++ L  +   A +    ++ FLA VSHE+RTP+ A++G  E++ ++    + +       
Sbjct: 652 ESALRQSTAQALQAVEARNHFLAVVSHELRTPIAAMLGLMEILASR----IKSNESQLLL 707

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
                S   +   VND+LD SKIE+ ++ L      L + +   +   +  A+ + +   
Sbjct: 708 TNAITSAERLKMHVNDILDFSKIEAQQLQLDVATYHLADELCPLLRSFEATADLQGLDFI 767

Query: 688 TSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
            ++  +    +  D   + QI  N+LSNA+ FT  G  I I    +        V DTG 
Sbjct: 768 VNWQPDARLLVQVDALRLNQIITNLLSNALKFTEKGS-IRICVEQSEQ-HFTFEVTDTGC 825

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           GMT  ++    +PF Q  +S   R  GTGLG+ +   +V+   G  ++ S   +GT + +
Sbjct: 826 GMTEPQIASIFQPFVQADSSITRRFGGTGLGMSIVANLVELMGGHIHVESEIDQGTTVRV 885

Query: 807 IFPLYDTS 814
             P+   +
Sbjct: 886 SLPVVGEA 893


>gi|150398896|ref|YP_001322663.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus vannielii SB]
 gi|150011599|gb|ABR54051.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus vannielii SB]
          Length = 620

 Score =  303 bits (777), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 75/247 (30%), Positives = 131/247 (53%), Gaps = 3/247 (1%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E ++   +L       +K    KSD +A VSHEIRTPLT+I G+ E++ ++  G + N  
Sbjct: 372 ELEKRALELEEKNTELKKLDDLKSDLIAIVSHEIRTPLTSIKGYVELVLDEAVGKINNS- 430

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             +       +   +  +++ +LD+SK+  G++ +H E +++ + + E I  ++  + EK
Sbjct: 431 QRKCLTTARENVVRLNRLISSMLDLSKLAKGELEMHREEINIKKTIDEVIDDLKPISAEK 490

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
            I I     + I  I AD   +KQ+ +N++ NAI F+P    I I      + +V + V+
Sbjct: 491 NINITLEIDDII--INADKDRMKQVFINLIENAIKFSPENEIIEIKGKEEYHGDVSITVK 548

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G G+   +LEK    F Q   S + +G+GTGLGL + K+++ A+ G  ++ S   KG 
Sbjct: 549 DNGEGIPKDKLEKVFDRFYQADLSPKRKGKGTGLGLAVCKSIIQAHGGSIWVKSEIGKGC 608

Query: 803 LIEIIFP 809
              I+ P
Sbjct: 609 TFYIVLP 615


>gi|124265292|ref|YP_001019296.1| signal transduction histidine kinase-like protein [Methylibium
           petroleiphilum PM1]
 gi|124258067|gb|ABM93061.1| signal transduction histidine kinase-like protein [Methylibium
           petroleiphilum PM1]
          Length = 938

 Score =  303 bits (777), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 114/648 (17%), Positives = 236/648 (36%), Gaps = 45/648 (6%)

Query: 184 VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL 243
           +       +      R    +    + +  +  +      I       P  ++   ++  
Sbjct: 162 LREASQLRERLFDFARAGGDWMWESDARHRYRWLSDAFQPITGI---DPRRQLGEPITDA 218

Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303
               A     +  + Y  L   +                    +    + + +     Y 
Sbjct: 219 QLLDADGSPRVPAQYYRALLDRQEPFARVLTAKHTPRGLLYLSRSAVPVFDAAGRFEGYR 278

Query: 304 SHRNHPSLSAYFDEGENL----TPETVDKCPIPFFVYS---HGNLFY--ANPSFLLLTKY 354
                 + +               E   + P   F +     G   Y   +     +   
Sbjct: 279 GTVRDVTSTLAAASEARRGEVTLRELAAQVPGMLFTFEEHPDGRAGYPFVSDGAERVLGM 338

Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
            +      A      +  P L+           R  R           +     +     
Sbjct: 339 AAATLQADALTFFRHVHPPDLAPLGKALAEGAARLTRLE-----HSFRMTLPDGSLRWFE 393

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT---------SDGI 465
                           +G   +    +  +  ++    +     +A          +DG+
Sbjct: 394 MRAAPTRLGDG-GTLWHGFTADVTARKAIEEALQAHEERWQIAADAARIGIAEFVLADGL 452

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
             ++R   I   N        YP   +    +   ++      +   + E L+ +  +  
Sbjct: 453 VNLDRRACI---NHG----LSYPHGRVTLDDWMAQIDPADRDAVMAGIGEALAGE--RPF 503

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKE 581
           E        +  +  L  +++     +        T  D+ E  Q  ++LS   + AE+ 
Sbjct: 504 EGRYRIRQPDGSVRWLEFVVRATRDEAGAPTGVIGTCRDVHEQ-QLADELSRGMQEAERA 562

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
           S  KS+FL+RVSHE+RTPL  I+GF++++      PL  P+       + R+GN +L+++
Sbjct: 563 SRAKSEFLSRVSHELRTPLNGILGFTQLMALDEDHPLAAPQAQR-LASVQRAGNRLLNLI 621

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701
           ND+L+IS+IES ++ +    V LD A+  ++SLVQ  A  + I I  +  + +  +  D 
Sbjct: 622 NDVLEISRIESAEVAVRTLAVDLDAALHASLSLVQSLARGRSITIEPTPPSGL-WVSGDE 680

Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761
           R+++Q+ +N+LSNAI ++     ++++   +    V + VRD GVG+T  +  +  +PF 
Sbjct: 681 RALEQVLVNLLSNAIKYSGEQSPVVLNLQRSD-GTVKIAVRDRGVGLTAEQQARLFQPFD 739

Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           ++  +++ R EG+GLGL +A+ + +A  G+  + S P  G+   +  P
Sbjct: 740 RL-GAERRRIEGSGLGLVIARQLAEAMGGRIDVVSVPGAGSTFTLQLP 786



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 47/378 (12%), Positives = 97/378 (25%), Gaps = 31/378 (8%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI-----GDLLKRQ 140
            W  DA    + +S+      G    + +G  + D + +L  D +  +       LL RQ
Sbjct: 183 MWESDARHRYRWLSDAFQPITGIDPRRQLGEPITD-AQLLDADGSPRVPAQYYRALLDRQ 241

Query: 141 NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
             +    T        LY+    +A+P++     F G+RG   V          +  +R 
Sbjct: 242 EPFARVLTAKHTPRGLLYLSR--SAVPVFDAAGRFEGYRG--TVRDVTSTLAAASEARRG 297

Query: 201 DKKFSHLHEIKKGHSSV--EKEKYDIFSQQSPPPHLRMKNKVSSL-------------TE 245
           +     L     G      E                R+    ++                
Sbjct: 298 EVTLRELAAQVPGMLFTFEEHPDGRAGYPFVSDGAERVLGMAAATLQADALTFFRHVHPP 357

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
             A     L      L   E S      D               G            ++ 
Sbjct: 358 DLAPLGKALAEGAARLTRLEHSFRMTLPDGSLRWFEMRAAPTRLGDGGTLWHGFTADVTA 417

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365
           R     +    E          +  I  FV + G +     + +          + +   
Sbjct: 418 RKAIEEALQAHEERWQIAADAARIGIAEFVLADGLVNLDRRACINHGLSYPHGRVTLDDW 477

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
           ++ +  A + +    I   +             R + I+    +   + F+     ++  
Sbjct: 478 MAQIDPADRDAVMAGIGEALA-----GERPFEGR-YRIRQPDGSVRWLEFVVRATRDEAG 531

Query: 426 ENMPQNGIEPEDVDTRIN 443
                 G   +  + ++ 
Sbjct: 532 APTGVIGTCRDVHEQQLA 549


>gi|225569244|ref|ZP_03778269.1| hypothetical protein CLOHYLEM_05326 [Clostridium hylemonae DSM
           15053]
 gi|225162043|gb|EEG74662.1| hypothetical protein CLOHYLEM_05326 [Clostridium hylemonae DSM
           15053]
          Length = 812

 Score =  303 bits (777), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 96/514 (18%), Positives = 181/514 (35%), Gaps = 45/514 (8%)

Query: 322 TPETVDKCPIPF---FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
               +    +      +  H  L +AN  +   T +   +          L       + 
Sbjct: 24  YSTLMRLLGVSVSKHLLDEHFTLVWANEFYYEFTGWSKEEYETTFHNRPDLYYKKDPKEW 83

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP-ED 437
             +  V+                  + N +         F         +    +   +D
Sbjct: 84  QELTNVVYNAIAAGEKGYKLLSRFRRKNGDYIWIQLSTQFSDEYIDGHQVAYTVMTNIDD 143

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGI--AIINREGIILST--NRAVSKLFGYPVEDIL 493
           V     ++ +           E+    +    I+    +     N    + FG       
Sbjct: 144 VVRMQKEQSV---------TYESLPGFVAKYRIDPHLNLTLLEGNSRFMEYFG------A 188

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLR-QTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
            +     L +   +     +       L  +    +    ++  ++L L++    + +  
Sbjct: 189 GQDSDNSLHKENITKNLDVILSQRENFLSGKPAHFVMKVQSRTGQMLWLQVNASCVDWQE 248

Query: 553 C---YSLTM---HDISEWKQEKNKLSHAKKI-------AEKESSHKSDFLARVSHEIRTP 599
               Y        DI+E +Q + KL+            AE  +  K+DFL+R+SHEIRTP
Sbjct: 249 GCPIYLAIFIDITDITELRQMQKKLTEQADALRDALSVAEHANQAKADFLSRMSHEIRTP 308

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           + AI G + +            R  +    I  S   ++ ++ND+LD+SKI++GKM +  
Sbjct: 309 MNAITGMTTIAAANIN---DRQRVADCLEKIASSSKHLMTLINDVLDMSKIDAGKMKIAH 365

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHF 718
           E   L        +++   A+ K +       +    +L  D   + Q+ +N+LSNA+ F
Sbjct: 366 ETFDLQNVTESITAIIYPQADAKGLKFSVPLVDITDTVLTGDALRLNQVLINLLSNALKF 425

Query: 719 TPSGGQIIISTTHTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           TP GG + +       +     +   V DTG+GM+   ++    PF Q   +      GT
Sbjct: 426 TPEGGAVRLEIRQLQKKAGRVRLRFTVSDTGIGMSQEFMKHLFTPFEQESTATGRSAGGT 485

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           GLG+P+ K +V    G   + S P KG+   +  
Sbjct: 486 GLGMPITKNLVTLMGGTVSVRSEPGKGSTFIVEL 519


>gi|269963512|ref|ZP_06177837.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269831687|gb|EEZ85821.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 859

 Score =  303 bits (777), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 84/376 (22%), Positives = 164/376 (43%), Gaps = 23/376 (6%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            ++E +      +       I + + E +++  N A  K      +     P     +  
Sbjct: 351 EELEAQKKSFRDLFNFALSPIMVWSEESVLIQMNPAARKELVIEDDHETMHPVFQGFKDK 410

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISE 563
               +           +   +           K+    +   ++    S   +   DI+ 
Sbjct: 411 LTPHLKMAAQGATLTGVNVPI---------GNKIYRWNLSPIRVDGDISGIIVQGQDITT 461

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + + + + A++ AEK +  ++DFLA++SHEIRTP+  I+G ++++K+     +     
Sbjct: 462 LIEAEKQSNIARREAEKSAQARADFLAKMSHEIRTPINGILGVAQLLKD----SVETEEQ 517

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
               + +  SG  +L ++ND+LD SKIE GK N+   P S  + +    ++ +   + K 
Sbjct: 518 KNQIDVLCHSGEHLLAVLNDILDFSKIEQGKFNIQKHPFSFTDTMRTLENIYRPICSNKG 577

Query: 684 ILIRTS--FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-----SNEE 736
           + +        N+  I  D   + QI  N++SNA+ FTPSG  I ++          N  
Sbjct: 578 VELVIENKLDPNV-EIFTDQVRLNQILFNLVSNAVKFTPSGS-IRLNAELEQFYGADNSV 635

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           +++ + DTG+G+ + +L++  +PF Q   +      G+GLGL + K +VD   G   + S
Sbjct: 636 LVVEITDTGIGIESDKLDQMFEPFVQEEATTTREYGGSGLGLTIVKNLVDMLEGDVQVRS 695

Query: 797 TPAKGTLIEIIFPLYD 812
           +   GT   +  P+ D
Sbjct: 696 SKGVGTTFVVTLPVKD 711


>gi|217977986|ref|YP_002362133.1| PAS/PAC sensor signal transduction histidine kinase [Methylocella
           silvestris BL2]
 gi|217503362|gb|ACK50771.1| PAS/PAC sensor signal transduction histidine kinase [Methylocella
           silvestris BL2]
          Length = 630

 Score =  303 bits (777), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 82/637 (12%), Positives = 205/637 (32%), Gaps = 32/637 (5%)

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244
            V+       A     +                        S  +          +    
Sbjct: 2   RVDDDGLPEHAPFLSDEAARGLKAAGAGAWRWRPATGAVSLSPLAAELLGAEAATLDYAG 61

Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
                  +        L     +  P   DF  +       +        +     E + 
Sbjct: 62  FLALVAAEDRAGANAALRAGAAALAPYDFDF-ALAQASAGARIRARGRFISQGGDVEAVG 120

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIA 363
                      +E  +     V             G +   N     +  YK+ + I   
Sbjct: 121 ILIAARWPKSSEEAASRLAAIVAFSDDAIIGETPEGVITDWNRGAETVFGYKAEEIIGDT 180

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
             +  L       D+   + + +    R            +      + ++       ++
Sbjct: 181 IAILAL-------DDQRDEMMKILERIRRGERIEHFETRRRRKDGEIIDVSVSVSPVWDE 233

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
               +    +  +    +  + ++      L S+L+   +   +I+  G++ S +    +
Sbjct: 234 AGHLVGIAKVARDVTTAKRAEIELREREAHLRSVLDTVPEATIVIDSSGVMQSFSANAER 293

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT--LEKITLGSTKEEKLLSL 541
           LFGY  ++ + +  ++ +        + YL        R+   L ++ +G  ++     +
Sbjct: 294 LFGYSAKEAIGRNVSLLMPSPYREQHDSYLDRYARTGERRIIGLGRVVVGLRRDGSTFPM 353

Query: 542 RIIIKKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEKESS--HKSDFLARVSHEIR 597
            + + ++       ++  + D++E ++ + +L   +      S      +  + ++HE+ 
Sbjct: 354 ELAVGEMQSGERRFFTGFVRDLTERQETQQRLQDLQSALVHISRFTAMGEMASTLAHELN 413

Query: 598 TPLTAIIGFSE---VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI-SKIESG 653
            PLTAI  +      + +   G        +              I+  +    ++ ES 
Sbjct: 414 QPLTAIASYLNGCRRLLDADRGGDKVAMVRDGVERAAAQALRAGQIIKRMRQFVARGES- 472

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713
                 +  SL + + EA +L  +   E  + +  +F   +  +L D   ++Q+ LN++ 
Sbjct: 473 ----ERQVESLPKLIEEASALALVGIKETGVRVGFAFDPRVAFVLVDKIQIEQVILNLMR 528

Query: 714 NAIHFTPSGGQ--IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           NAI       +  + I+T   + + V + V DTG G++     +  +PF           
Sbjct: 529 NAIEAMLDCARRDLTIATAELAGDMVEVSVADTGPGISPDIAAQLFQPFVTTKPD----- 583

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            G G+GL +++ +++A+ G+ ++   P  GT+  +  
Sbjct: 584 -GLGIGLSISRTIIEAHGGRLWVEPNPGGGTVFRLTL 619



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/243 (9%), Positives = 63/243 (25%), Gaps = 11/243 (4%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ-NTWYGKTTL 149
             G + + +       G  A ++IG  +  ++     D    I + ++R     + +T  
Sbjct: 154 PEGVITDWNRGAETVFGYKAEEIIGDTIAILALDDQRDEMMKILERIRRGERIEHFETRR 213

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
              +G  + V + ++  P++       G     +              +  +     + +
Sbjct: 214 RRKDGEIIDVSVSVS--PVWDEAGHLVGIAK--VARDVTTAKRAEIELREREAHLRSVLD 269

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHL------RMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
                + V      + S  +    L          +  SL     +++           T
Sbjct: 270 TVPEATIVIDSSGVMQSFSANAERLFGYSAKEAIGRNVSLLMPSPYREQHDSYLDRYART 329

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
            E   +        +  +  T        +  S E   +       +      +      
Sbjct: 330 GERRIIGLGRVVVGLRRDGSTFPMELAVGEMQSGERRFFTGFVRDLTERQETQQRLQDLQ 389

Query: 324 ETV 326
             +
Sbjct: 390 SAL 392



 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 46/337 (13%), Positives = 92/337 (27%), Gaps = 22/337 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY---- 144
           ID+ G ++  S    +  G  A + IG  +  +    + + ++   D   R         
Sbjct: 278 IDSSGVMQSFSANAERLFGYSAKEAIGRNVSLLMPSPYREQHDSYLDRYARTGERRIIGL 337

Query: 145 -GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                    +G+    P++LA   + S  R F  F GF      R   + +   +RL   
Sbjct: 338 GRVVVGLRRDGSTF--PMELAVGEMQSGERRF--FTGF-----VRDLTERQETQQRLQDL 388

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK---YP 260
            S L  I +  +  E           P   +                 D +   +     
Sbjct: 389 QSALVHISRFTAMGEMASTLAHELNQPLTAIASYLNGCRRLLDADRGGDKVAMVRDGVER 448

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
                  +    +          +++Q     +   + S   L       +   F     
Sbjct: 449 AAAQALRAGQIIKRMRQFVARGESERQVESLPKLIEEASALALVGIKETGVRVGFAFDPR 508

Query: 321 LTPETVDKCPIPFFVYSHGN--LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
           +    VDK  I   + +     +              + +       +S     P +S +
Sbjct: 509 VAFVLVDKIQIEQVILNLMRNAIEAMLDCARRDLTIATAELAGDMVEVSVADTGPGISPD 568

Query: 379 NAI---KPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
            A    +P +  + D   I  S     I+ +      
Sbjct: 569 IAAQLFQPFVTTKPDGLGIGLSISRTIIEAHGGRLWV 605


>gi|253702551|ref|YP_003023740.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21]
 gi|251777401|gb|ACT19982.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21]
          Length = 677

 Score =  303 bits (777), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 96/569 (16%), Positives = 193/569 (33%), Gaps = 55/569 (9%)

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
           +S P Q D         T +Q    L  +S     Y              E        +
Sbjct: 4   ASDPPQPDPQDAQDALATLRQKLAGLGESSMRKSYYPEL-------QERLEELERFKALL 56

Query: 327 DKCPIPFFV--YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
           D       +   S G +   N S    T +   + ++      +L D   L  N A + +
Sbjct: 57  DHSNEAIILIEVSTGRIVDLNDSASRQTGWSHDELLQQ-----SLFDLSNLEQNPAAQAL 111

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
           +    D             + N     A          QF +N     +  +    +  +
Sbjct: 112 IRSADDMGASGMLVVTELHRKNGGRFPAEI---TLNRMQFRDNSYVLAVARDITQRKAME 168

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREG-IILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
             +      L +I++     +     +G   ++ N+A  ++FG    ++L +       +
Sbjct: 169 EALRESEEFLKNIVDHIPAVVFAKEVQGLRFVTINKACQEVFGLSRAEVLGRTNYDLFPK 228

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMH 559
                      E L+      + +  + +   +++  LR+    L  +            
Sbjct: 229 EQADFFTKVDRETLAKGELVEVPEEIISTPSGDRI--LRVKKIPLFDNQGKERFLLGIAE 286

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           DI+E KQ + KL  ++K+              V+H+    L  I+G+  ++ N+   P  
Sbjct: 287 DITERKQLEEKLLQSQKM-----EAIGQLAGGVAHDFNNILMVILGYGSILLNEGALP-- 339

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
             R  E    I  + +    + +DLL  S+    K  +    ++L++ +      +    
Sbjct: 340 -ARQKEQVEQIMNAADKAAKLTSDLLAFSR----KQVIKPATMNLNDIILHVEKFLS-RI 393

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-------- 731
             + + ++        ++  D   ++Q+ +N+ +NA    P GG + I T+         
Sbjct: 394 IGEDVQLKARLTPRELQVDVDRGQIEQVLINLATNARDAMPKGGLLTIETSSLQIDDAFV 453

Query: 732 ------TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
                       ++ + DTGVGM      +  +PF          G+GTGLG+ +   ++
Sbjct: 454 QANGIGAPGPYAVISISDTGVGMNEQTRRRIFEPFFTTK----EMGKGTGLGMSIVYGII 509

Query: 786 DANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
             + G   ++S P  GT   I  P  + S
Sbjct: 510 KQHNGFVNVYSEPKIGTTFRIYLPFSEQS 538



 Score = 41.6 bits (96), Expect = 0.56,   Method: Composition-based stats.
 Identities = 25/264 (9%), Positives = 74/264 (28%), Gaps = 22/264 (8%)

Query: 93  GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTW--YG---KT 147
           G + ++++   +  G    +++   L D+S   +++ N     L++  +     G    T
Sbjct: 71  GRIVDLNDSASRQTGWSHDELLQQSLFDLS---NLEQNPAAQALIRSADDMGASGMLVVT 127

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
            L    G      I L  +     +          +              +  ++   ++
Sbjct: 128 ELHRKNGGRFPAEITLNRMQFRDNSYVL------AVARDITQRKAMEEALRESEEFLKNI 181

Query: 208 HEIKKGHS---SVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK--TEKYPLL 262
            +          V+  ++   ++         + +V   T Y     +     T+     
Sbjct: 182 VDHIPAVVFAKEVQGLRFVTINKACQEVFGLSRAEVLGRTNYDLFPKEQADFFTKVDRET 241

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
            ++   +   E+  +        +     L +N  +    L      +     +E    +
Sbjct: 242 LAKGELVEVPEEIISTPSGDRILRVKKIPLFDNQGKERFLLGIAEDITERKQLEEKLLQS 301

Query: 323 P--ETVDKCPIPFFVYSHGNLFYA 344
              E + +       +   N+   
Sbjct: 302 QKMEAIGQLAGGVA-HDFNNILMV 324


>gi|148262093|ref|YP_001228799.1| multi-sensor signal transduction histidine kinase [Geobacter
           uraniireducens Rf4]
 gi|146395593|gb|ABQ24226.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter
           uraniireducens Rf4]
          Length = 758

 Score =  303 bits (777), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 90/461 (19%), Positives = 200/461 (43%), Gaps = 27/461 (5%)

Query: 365 GLSTLLDAPKLSDNNAIKPVM-LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
           G+         +      P+  L +  R   A       +  + +    +       A+ 
Sbjct: 312 GILLSFAIAFAAARKLTGPLRELAQGARMIEAGDLNQRVVVKSGDEVGTLAGSFNRMASA 371

Query: 424 FPENMPQNGIEPEDVDT---------RINKRKMEIEVMQLCSILEATSDGIAIINREGII 474
             E       + +D+                ++ +E+ +L ++L   ++G+ + +++  +
Sbjct: 372 LAERDSIISKKNQDLQELNELLEKKVTTRTAELSMEMGRLEAVLTCMAEGVVVTDKDNRV 431

Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
           +  N A   +F      ++ +P          +++   + EI          +  +    
Sbjct: 432 ILFNPAAQNIFDLVPFRVVGQPIEQVCRVGEFTLLLDCIREIRESGGPVASRQEEMEVKG 491

Query: 535 EEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
           ++  ++L  +       +   +++ DI+     + ++             K+DF++ VSH
Sbjct: 492 KKLKINLSPMADDAGQFAGVVMSIRDIT----AEEEV----------DRMKTDFISTVSH 537

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           E++TPLT++ G  +++ N+  G        +  +   R+   ++ ++N++LDISKIESG 
Sbjct: 538 ELKTPLTSMKGSLQLLLNR--GKWLTDTERQLLSVCLRNTQRLIRLINEILDISKIESGG 595

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714
           M   ++P+S+ E V  A   ++ +A  + I I  S  +++P I  D   + Q+  N+LSN
Sbjct: 596 MKFDYKPLSMGELVVYAAEEIKGFALSRNISIVNSVGDHLPLIFGDHDRLIQVLTNLLSN 655

Query: 715 AIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           A+ F+P G  +++         +++ V D G  +   + EK  K F Q+ N+ Q++  GT
Sbjct: 656 AVKFSPEGKVVMV-LAEREGNYLLVSVADRGKVIQWADREKLFKKFQQLNNADQLQQGGT 714

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
           GLGL + K +++ + G+ Y  +    G +     P+++  H
Sbjct: 715 GLGLAICKEIIEKHHGRIYYNAGKEGGNVFTFTVPIFEEDH 755


>gi|300117495|ref|ZP_07055285.1| sensor histidine kinase [Bacillus cereus SJ1]
 gi|298725330|gb|EFI65982.1| sensor histidine kinase [Bacillus cereus SJ1]
          Length = 591

 Score =  303 bits (777), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 81/371 (21%), Positives = 156/371 (42%), Gaps = 39/371 (10%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            ++ E  QL SIL + +DG+  +N+EG ++  N           E+       + L +  
Sbjct: 249 ALQQEKEQLASILSSMADGVITLNQEGEVVVINPPAEHFLQVWQEEK-----EIELSKKL 303

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
           PS +      ++  + +Q +E        +   + L   +            + D++E +
Sbjct: 304 PSELVELFHLVVESEQQQVVEINLQ----KGNYVVLMTPLYNQTKIRGAVAVLRDMTEER 359

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + +                + DF+A VSHE+RTP+  + G+SE I +            E
Sbjct: 360 RLE--------------KMRQDFIANVSHELRTPMVMLQGYSEAILDDIVQT--KEEINE 403

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           +   I      +  +VN+LLD++++ESG + LH   V +   V +     Q  A +K + 
Sbjct: 404 FVQIIYDESVRLGKLVNELLDLARMESGNVELHIGEVDIHPFVEKIGRKFQGIAKDKEVA 463

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +   F ++I +   D   ++Q+  N++ NAI  T +GG + +     +N  +I  V+D+G
Sbjct: 464 LTVDFKDSIEQYPFDADRMEQVLTNLIDNAIRHTNAGGHVTLVIDTKNNG-LIFEVQDSG 522

Query: 746 VGMTNYELEKAMKPFGQIPNSQQI-------RGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           VG+   ++      F +   ++          G        +AK +V  + GK  + S  
Sbjct: 523 VGIPEEDIPFLFDRFYKADKARTRGKKGGTGLGL------AIAKNIVQGHDGKIAVSSVV 576

Query: 799 AKGTLIEIIFP 809
            +GT   +  P
Sbjct: 577 GEGTTFSVYLP 587


>gi|296446569|ref|ZP_06888511.1| PAS/PAC sensor signal transduction histidine kinase [Methylosinus
           trichosporium OB3b]
 gi|296255923|gb|EFH03008.1| PAS/PAC sensor signal transduction histidine kinase [Methylosinus
           trichosporium OB3b]
          Length = 848

 Score =  303 bits (777), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 129/694 (18%), Positives = 248/694 (35%), Gaps = 42/694 (6%)

Query: 134 GDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSR-NREFSGFRGFGIVHVNRVDND 192
              L+ +  W          G    + +   A P   R   E     G  ++ +  V  D
Sbjct: 157 ARELEERIGW------LRQSGEGFRLAV---ASPQGRRFEAEGRAVAGRAVLRIREVSGD 207

Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD 252
              L    ++    + E  +G  ++ +        +S    L   N   +         D
Sbjct: 208 RLELLSLRERHARCVAEA-EGLHAMLEALPTPVWMRSADGRLSFVNAAYAAAVEAESPAD 266

Query: 253 VLKTE----KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN---SKESFEYLSH 305
            L+ +     +        +    E F          +++   +         +   L  
Sbjct: 267 ALRRQIELIDHQARAEATVARTRDEVFRARVTAVVAGERHGLDVVEAPFHGASAALALDR 326

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAG 364
               ++ +  ++       T+D+ PI   ++     L Y N ++  L        ++   
Sbjct: 327 HEIDAMRSDLEQQMQAHARTMDQLPIAVAIFDRRKRLVYRNAAYERLWPPLDRAFLDQGP 386

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
             S +LD  +      ++        R        L   + + E+   +  +P  +  + 
Sbjct: 387 SDSQILDRLRAEQRLPVETDYKAWKSRL-------LEAYRSSEEHHEHIWHMPDGRTLRV 439

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI----LEATSDGIAIINREGIILSTNRA 480
             N+   G      D    +  +E     L  +    LE   +G+A+   +G +   N A
Sbjct: 440 VVNVNPQGGVTYLYDDVSERYFLETRFHALDRMQNETLENLREGVAVFGADGRLRFCNPA 499

Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMN-----HYLTEILSLDLRQTLEKITLGSTKE 535
              L+      +  KP    +      +         L   ++             +  +
Sbjct: 500 FVALWRLDKHALDEKPRFDAVAGLCAKLHANEDTWSELRGFVTGLQEMRKGFTRRIARSD 559

Query: 536 EKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
             +L                LT  D++     +  L+   +        ++DF+  VS+E
Sbjct: 560 GSVLDCTAQTLP---EGAALLTFVDVTAGVNVERALTERNEALIAAEKIRNDFVHHVSYE 616

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           +R+PL  IIGFS  +  ++     N + +EY +Y+ +S   +L I+ND+LD++ I+S  M
Sbjct: 617 LRSPLNNIIGFS-HLLGEKSTGELNAKQLEYLSYVGKSSAALLAIINDILDLATIDSDAM 675

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715
            L    V +++A+  A   VQ    E  I ++     ++     D + ++QI  N+LSNA
Sbjct: 676 ALELGDVDVEDAMRAAAEGVQDRLAENTIELKIVATGDVGCFRGDAKRIRQILFNLLSNA 735

Query: 716 IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           I F+  G  I +        E++L+V D G G+    LEK    F    ++   R  G G
Sbjct: 736 IGFSRPGQTITL-AALRREGEIVLKVADRGRGIAPEALEKVFDRFE--SHTAGSRHRGVG 792

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           LGL + +A  + + G+  I S   +GT +  IFP
Sbjct: 793 LGLSIVRAFTELHGGRVLIDSALGEGTTVTCIFP 826



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 47/405 (11%), Positives = 116/405 (28%), Gaps = 36/405 (8%)

Query: 197 GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256
             R +   +   ++         E     S        R     + LT   A + +    
Sbjct: 106 LDRAETFLASEPQLLVSWDGAASEPDVENSLGDAAFARRPLAFGTWLTMKDARELEERIG 165

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
                      ++   +        +    +    ++  S +  E LS R      A   
Sbjct: 166 WLRQSGEGFRLAVASPQGRRFEAEGRAVAGRAVLRIREVSGDRLELLSLRER---HARCV 222

Query: 317 EGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
                    ++  P P ++ S  G L + N ++    + +S            L    +L
Sbjct: 223 AEAEGLHAMLEALPTPVWMRSADGRLSFVNAAYAAAVEAESPA--------DALRRQIEL 274

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
            D+ A     + R+        AR+  +     + L +   PF  A+          +  
Sbjct: 275 IDHQARAEATVARTRDEV--FRARVTAVVAGERHGLDVVEAPFHGASA--------ALAL 324

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF---------- 485
           +  +    +  +E ++      ++     +AI +R   ++  N A  +L+          
Sbjct: 325 DRHEIDAMRSDLEQQMQAHARTMDQLPIAVAIFDRRKRLVYRNAAYERLWPPLDRAFLDQ 384

Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
           G     IL +           +    + + +L            +    + + L + + +
Sbjct: 385 GPSDSQILDR-LRAEQRLPVETDYKAWKSRLLEAYRSSEEHHEHIWHMPDGRTLRVVVNV 443

Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
                    +    D+SE    + +     ++  +   +  + +A
Sbjct: 444 NP---QGGVTYLYDDVSERYFLETRFHALDRMQNETLENLREGVA 485



 Score = 46.9 bits (110), Expect = 0.015,   Method: Composition-based stats.
 Identities = 38/381 (9%), Positives = 96/381 (25%), Gaps = 31/381 (8%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            W   A G L  ++      +   +      R  ++ D            + + ++  + 
Sbjct: 239 VWMRSADGRLSFVNAAYAAAVEAESPADALRRQIELIDH----QARAEATVARTRDEVFR 294

Query: 146 KTTLWPIEGTNLYVPID------LAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199
                 + G    + +        +A     R  E    R               A    
Sbjct: 295 ARVTAVVAGERHGLDVVEAPFHGASAALALDR-HEIDAMRS-----DLEQQMQAHARTMD 348

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
                  + + +K           ++         +  +    L    A +   ++T+  
Sbjct: 349 QLPIAVAIFDRRKRLVYRNAAYERLWPPLDRAFLDQGPSDSQILDRLRAEQRLPVETDYK 408

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE------YLSHRNHPSLSA 313
              +    +    E+ H              TL+     + +      Y        L  
Sbjct: 409 AWKSRLLEAYRSSEEHH----EHIWHMPDGRTLRVVVNVNPQGGVTYLYDDVSERYFLET 464

Query: 314 YFDEGENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYK--SVDDIEIAGGLSTLL 370
            F   + +  ET++       V+ + G L + NP+F+ L +    ++D+      ++ L 
Sbjct: 465 RFHALDRMQNETLENLREGVAVFGADGRLRFCNPAFVALWRLDKHALDEKPRFDAVAGLC 524

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
                +++   +        +       R   I  +  + L  T     +       +  
Sbjct: 525 AKLHANEDTWSELRGFVTGLQEMRKGFTR--RIARSDGSVLDCTAQTLPEGAALLTFVDV 582

Query: 431 NGIEPEDVDTRINKRKMEIEV 451
                 +         +    
Sbjct: 583 TAGVNVERALTERNEALIAAE 603


>gi|239624738|ref|ZP_04667769.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239521124|gb|EEQ60990.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 806

 Score =  303 bits (777), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 95/514 (18%), Positives = 185/514 (35%), Gaps = 50/514 (9%)

Query: 343 YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI-------KPVMLYRSDRTCIA 395
           Y N     +     + +       +       L  ++         +  ML         
Sbjct: 145 YVNCQKDAMW--TDIPEHGNFDSENRRYSRQVLHPDDLEQFEQYFTRASMLRIFGTGKKQ 202

Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
            + RL  +  +      + F   +             +  +  D  + +++  +E+ QL 
Sbjct: 203 ITRRLRRLTKDG-TYHIVEFTAAKVEPPAETGCWCVLVYRDIQDEYMLEQRRNVEISQLA 261

Query: 456 SILEATSDGIAIINREGI---ILSTNR-----AVSKLFGYPVEDILRKPFTVFLEQNTPS 507
           +        +  +N       +L  NR           GY  + I  +     +  +   
Sbjct: 262 TAARTAYQMLIAVNLTRNTYDMLEYNRYPVSKPAES--GYFTDLIAAEH--ETVHPDYQK 317

Query: 508 VMNHYLTEI----LSLDLRQTLEKITLGSTKEEKLLS----LRIIIKKLPFSSCYSLTMH 559
                 +           +  +         +         +  +               
Sbjct: 318 EFMDKFSRQSLMDAYRGGQHIVSMKIPHRGTDGLYHWSHTEVVHVESPDTDDLIEITLSR 377

Query: 560 DISEWKQEKNKLSHAKKIAEK-----------ESSHKSDFLARVSHEIRTPLTAIIGFSE 608
            I E ++ +      ++ A++            +  K+DFL+++SH+IRTP+ AIIG ++
Sbjct: 378 SIDEDRRIQEAAIEKERQAKQLLEEALQKAENANHAKNDFLSKMSHDIRTPMNAIIGMTQ 437

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
           +    R       R  +Y   I  +   +L ++N++LD+SKIESG + L     +L+  +
Sbjct: 438 LA---RLHTGEEKRLKDYLEKIANASTHLLSLINEVLDVSKIESGTVKLEENEFNLNHLL 494

Query: 669 SEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIII 727
            + + +V++  ++K   +       + P++L D R +KQI +NIL NA  +TP  G+I I
Sbjct: 495 EDVVEMVRISLDQKCQSLSVHIEEGLHPQVLGDERRLKQILVNILDNASKYTPEDGRISI 554

Query: 728 STTH-----TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
                     +       + DTG+GM    +E   +PF +  +S+  +  GTGLG+ + K
Sbjct: 555 RLNELNKMTQTMGTYCFIIEDTGIGMKPEYIEHIFEPFSRADDSRTSKTVGTGLGMTIVK 614

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
            +V    G   I S    GT   I   L     P
Sbjct: 615 NLVSMMGGDIQIESEYGNGTRFLITLTLTKCGAP 648


>gi|331270613|ref|YP_004397105.1| two-component sensor histidine kinase [Clostridium botulinum
           BKT015925]
 gi|329127163|gb|AEB77108.1| two-component sensor histidine kinase [Clostridium botulinum
           BKT015925]
          Length = 710

 Score =  303 bits (777), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 84/389 (21%), Positives = 167/389 (42%), Gaps = 14/389 (3%)

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY---PVEDILRK 495
           +    +  +     +L  ++ A  D I + +  G  L  N +  K F     P ++   +
Sbjct: 297 EKHHTRNALIESEKRLRILINAFPDLICLKDGNGHWLEINESTIKFFNLKNVPWKNKTTQ 356

Query: 496 PF-----TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
                     + +N      H+    L        +     +  E+ +L +  +      
Sbjct: 357 NIINTLTHKNIYENRLKKYEHFDNIALMRKTIVNYQDEFCLANGEKIVLDIFKVPIFDCN 416

Query: 551 SS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
           ++        HD++   + +       ++  +    + +F A +SHE++TPL  I+   +
Sbjct: 417 NNLTGMVTIGHDLTAHIKAEENSKLLNEML-EYQKLRVEFFANISHELKTPLNLILSAVQ 475

Query: 609 V--IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
              + N +     +  + +Y N I ++   ++ IVN+++DI+KI+SG   +H E  ++ E
Sbjct: 476 YVELVNNKNFDFNSDSFCKYTNIIKQNSYRLVRIVNNIIDITKIDSGYFQIHPENYNIVE 535

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726
            V +       Y + K +            I  D   +++I LN+LSNAI FT  GG+I 
Sbjct: 536 LVEDICLYCASYIHSKDLDFIFDTETEEKIISCDALIMERIILNLLSNAIKFTQPGGRIT 595

Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
           ++  +  + E+ + V+DTG+G+     +   + F Q+  S     EG+G+GL L KA VD
Sbjct: 596 VNI-YDKDNEIQISVKDTGIGIPENRQDLIFERFIQVDKSLSRNHEGSGVGLSLVKAFVD 654

Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            + G   + S    G+   I  P+ + ++
Sbjct: 655 LHNGSIEVKSKVGHGSEFLITLPVSNIAN 683


>gi|13476354|ref|NP_107924.1| two component histidine sensor kinase [Mesorhizobium loti
           MAFF303099]
 gi|14027115|dbj|BAB54069.1| two component histidine sensor kinase [Mesorhizobium loti
           MAFF303099]
          Length = 541

 Score =  303 bits (777), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 115/374 (30%), Positives = 177/374 (47%), Gaps = 20/374 (5%)

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
           +L  I++A    I  + R G +L  +     L   P E +    F   +  +        
Sbjct: 139 RLEDIIDAV---ILRVARHGEVLDASDKARTLLKLPPELLSGTGFFDRVHLSDRVSYLSA 195

Query: 513 LTEILSLDLRQTLEKITLG----------STKEEKLLSLRIIIKKLPFSSC------YSL 556
           L ++      + LE                  + +L++       L           ++L
Sbjct: 196 LADMRDGAASRRLELRVRLPQNGNGQNDTRQSDSRLMADNYRPFLLELLRGEEQSDVFTL 255

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            + +  E  + + +L+ A + A      K  FLA VSHE+RTPL AIIGFS+++ ++ FG
Sbjct: 256 VLRENDETARLREELAQANETAAAAEVAKGRFLAVVSHELRTPLNAIIGFSDMLLHEMFG 315

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
              +PR  EY   +  SG  +L +V  +LD+S+IESG      EP    EAV    S+++
Sbjct: 316 AFKDPRQKEYVTLVRDSGQHLLAVVTSILDVSRIESGAYTADPEPFRFMEAVDMCQSMMR 375

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
           L A  K I ++T  A +   I AD R+V+Q+ +N++SNAI FTP GG +++         
Sbjct: 376 LQAQAKNIDLQTQIAPDAGDINADRRAVQQMLINLVSNAIKFTPDGGDVVVGAKRI-GSR 434

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           +   VRDTG+G+   +     KPF QI N    R EGTGLGL L K +V  + G   I S
Sbjct: 435 LHFWVRDTGIGIAEEDFANLGKPFTQIQNDYTRRFEGTGLGLSLVKGLVALHEGTMSIES 494

Query: 797 TPAKGTLIEIIFPL 810
            P +GT + I  P+
Sbjct: 495 MPGEGTTVTISLPV 508


>gi|332306526|ref|YP_004434377.1| multi-sensor hybrid histidine kinase [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332173855|gb|AEE23109.1| multi-sensor hybrid histidine kinase [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 1040

 Score =  303 bits (777), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 108/651 (16%), Positives = 229/651 (35%), Gaps = 44/651 (6%)

Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA 248
                +    RL+  F+        +     ++  I S       L   ++V    E   
Sbjct: 100 DSATAQQWQTRLESTFAAFLHSNSEY-----DQLRIISADERAMELVRVDRVDGKIEVVP 154

Query: 249 HK-----DDVLKTEKYPLLTSEE---SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF 300
            +      +    ++   L   E   S +    +F  ++       +    + +++   F
Sbjct: 155 PEHLQSKRNSEYAQRSAKLAPGEIYMSRISLNREFGKLDFPYRPMLRLSLPIFDDNGGRF 214

Query: 301 EYLSHRNHPSLSAYFDEGENLTPE-TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDD 359
            +L    +        +     P   +      +F+ +  N    +       K+++V  
Sbjct: 215 GFLIVNINARKLLDSIKNVPEEPNYLILTDSDGYFLVTPNNDHQYSRDLARDYKWETV-- 272

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS--ARLHTIQWNRENSLAMTFIP 417
            +    L+        +++++    +L R                +        ++    
Sbjct: 273 FKHNSTLADHFTQVGFTEDDSENYYVLTRKILVTGDVESGFLFANLMAPETYVHSIEMQR 332

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINK--RKMEIEVMQLCSILEATSDGIAIINREGIIL 475
                 F  ++    +       R  +  +++  E  Q  +I+ A+ D I  ++  G ++
Sbjct: 333 RTTVYAFLCSITAIMLIVLSFFNRSARKSQQLADERAQSAAIVSASQDAIISVSVTGEVM 392

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
           S N A   L     +  +          +   +      ++ + + +   E     +   
Sbjct: 393 SWNYAAESLLELSAQSAIGNSLIELSVFDDVELG-DIFEKLSNKNTQLNAETQIDTNEGS 451

Query: 536 EKLLSLRIIIKKLPFSS--CYSLTMHDISEWK-----------QEKNKLSHAKKIAEKES 582
           ++ L+L               ++   +++  +           + + K++      +K S
Sbjct: 452 QRYLALSFSSISNDDGEVKGIAIIARNVTNERIADEKIKQANAELEEKVAVRTVELQKAS 511

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
             KS F++ +SHE+RTPL  IIG   ++K              Y    + S N +  +VN
Sbjct: 512 RVKSAFISNISHEMRTPLNGIIGTLNLVKRDPL----TDNQQRYIEMTEVSVNTLSTLVN 567

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN-NIPRILADL 701
           D+LD+SKIE+GK++L F+  +    +      + + A EK +      +  +   +++D 
Sbjct: 568 DVLDLSKIEAGKLDLDFKSFNPINLIESLCGSMAVKAQEKGLEFVIDVSRLDCVSMVSDP 627

Query: 702 RSVKQIALNILSNAIHFTPSGGQIIIS--TTHTSNEEVIL--RVRDTGVGMTNYELEKAM 757
               QI  N+++NAI FT  G  I +S  T  T +  V+L   + D+G G+      K  
Sbjct: 628 HRFSQIMTNLVNNAIKFTEKG-YIKVSAYTQQTDSGSVVLHCAIEDSGTGIAKENQHKLF 686

Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
             F Q  +S   +  GTGLGL + + +V    G     S   KG+      
Sbjct: 687 SAFSQEDSSIASKHGGTGLGLSICRQLVTLLNGDVRFESEKNKGSTFYFSI 737


>gi|169334535|ref|ZP_02861728.1| hypothetical protein ANASTE_00938 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259252|gb|EDS73218.1| hypothetical protein ANASTE_00938 [Anaerofustis stercorihominis DSM
           17244]
          Length = 872

 Score =  303 bits (777), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 105/377 (27%), Positives = 164/377 (43%), Gaps = 22/377 (5%)

Query: 456 SILE----ATSDGIAII---NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
           SI +      + G+ +    +     +S   +  KLFG   E +L       + +N    
Sbjct: 229 SIFDTISKNIAQGLFLHNLNDPNENFIS--ESSEKLFGIKHEKLL--NGYDLIIRNIDEK 284

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTK-EEKLLSLRIIIKKLPFSSC--YSLTMHDISEWK 565
               +++I     ++  E           ++L +++ +  +       +     D ++  
Sbjct: 285 DREEISKIQKSTDKEDWEYTFDYHHPISGEVLKIKMSVNYVDADGEDVWLTVYSDETDQV 344

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
             +  L +A + AEK +  KSDFL+R+SHEIRTPL  IIG    +  +          I+
Sbjct: 345 LMQESLKNALEKAEKANEAKSDFLSRMSHEIRTPLNGIIGMV-TLARENINNKSKE--ID 401

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
             N I  S   +L ++ND+LD+SKIESGK+ +  +       V   +SL    A EK I 
Sbjct: 402 CVNKISASSKHLLVLINDILDMSKIESGKVEIKNKKFGFRNFVESTVSLFFSQAKEKGIK 461

Query: 686 IRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII--ISTTHTSNEEV--ILR 740
            ++    NIP  +  D     QI +N+LSNA+ FT  GG+I   IS     + +V     
Sbjct: 462 FKSVLIGNIPSYVKGDYLHTNQIIVNLLSNAVKFTDKGGEITNRISLLKEEDNKVWIRFE 521

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V DTGVG+     +K   PF Q   S      GTGLGLP+AK       G   + S   K
Sbjct: 522 VSDTGVGIEKKNFDKIFNPFEQEDASVSYNYGGTGLGLPIAKRFTQMLGGNISLKSEVGK 581

Query: 801 GTLIEIIFPLYDTSHPH 817
           G+   +  P      P+
Sbjct: 582 GSTFTVDLPFTRIPEPN 598


>gi|218896506|ref|YP_002444917.1| sensor histidine kinase ResE [Bacillus cereus G9842]
 gi|228900156|ref|ZP_04064389.1| hypothetical protein bthur0014_13630 [Bacillus thuringiensis IBL
           4222]
 gi|218543681|gb|ACK96075.1| sensor histidine kinase ResE [Bacillus cereus G9842]
 gi|228859562|gb|EEN03989.1| hypothetical protein bthur0014_13630 [Bacillus thuringiensis IBL
           4222]
          Length = 591

 Score =  303 bits (777), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 80/371 (21%), Positives = 155/371 (41%), Gaps = 39/371 (10%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            ++ E  QL SIL + +DG+  +N+EG ++  N           E+       + L +  
Sbjct: 249 ALQQEKEQLASILSSMADGVITLNQEGEVVVINPPAEHFLQVWQEEK-----EIELSKKL 303

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
           PS +      ++  + +Q +E        +   + L   +            + D++E +
Sbjct: 304 PSELVELFHLVVESEQQQVVEINLQ----KGNYVVLMTPLYNQTKIRGAVAVLRDMTEER 359

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + +                + DF+A VSHE+RTP+  + G+SE I +            E
Sbjct: 360 RLE--------------KMRQDFIANVSHELRTPMVMLQGYSEAILDDIVQT--KEEIDE 403

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           +   I      +  +VN+LLD++++ESG + LH   V +   V +     Q  A +K + 
Sbjct: 404 FVQIIYDESVRLGKLVNELLDLARMESGNVELHIGEVDIHPFVEKIGRKFQGIAKDKEVA 463

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +   F ++I +   D   ++Q+  N++ NAI  T +GG + +     +N  +I  V+D+G
Sbjct: 464 LTVDFKDSIEQYPFDADRMEQVLTNLIDNAIRHTNAGGHVTLVIDSKNNG-LIFEVQDSG 522

Query: 746 VGMTNYELEKAMKPFGQIPNSQQI-------RGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
            G+   ++      F +   ++          G        +AK +V  + GK  + S  
Sbjct: 523 AGIPEEDIPFLFDRFYKADKARTRGKKGGTGLGL------AIAKNIVQGHDGKISVSSVV 576

Query: 799 AKGTLIEIIFP 809
            +GT   +  P
Sbjct: 577 GEGTTFSVYLP 587


>gi|89895636|ref|YP_519123.1| hypothetical protein DSY2890 [Desulfitobacterium hafniense Y51]
 gi|89335084|dbj|BAE84679.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 467

 Score =  303 bits (777), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 81/363 (22%), Positives = 165/363 (45%), Gaps = 25/363 (6%)

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
             E  ++ +IL    +G+  ++  G I+  NRA  +LFG   E +  K F+         
Sbjct: 112 RQEAQKIQAILAGMQEGVISLDHVGRIVLLNRAAERLFGREQEAVRDKHFSEL---CGFE 168

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQE 567
            +   +T+ L      + +     ++K      +  I  +   S    +  +DI+E ++ 
Sbjct: 169 ELGDLVTQALEKG--SSGQIELATNSKLMIRAQVSPISGERARSQGAVIVCYDITEIRRL 226

Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE-Y 626
           +                +++F+  VSHE+RTPLT+I GF E + +   G    P   E +
Sbjct: 227 E--------------LLRTEFVGNVSHELRTPLTSIKGFVETLLD---GASEVPHLRERF 269

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
            N I +    +  +V++LL +S+IE+ + +       + EA  +   +++ YA  K++ +
Sbjct: 270 LNIIHKETLRLQRLVDELLTLSRIENQRQDAGQGMSKVQEAYEKIRPVIEPYAEAKKVEL 329

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
                 ++P +   +  + Q+ LN++ NA+ +T  G ++ +      + +++L   DTG 
Sbjct: 330 EIKIPKDLPEVAMGIDLLSQVLLNLMENAVKYTVKG-KVWLH-AFHDDGKILLEFGDTGC 387

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+   +L +  + F ++  ++     GTGLGL + K +V+   GK  + S    G++   
Sbjct: 388 GIPKEDLPRIFERFYRVDKARSREQGGTGLGLSIVKHIVEGAKGKITVASELGSGSVFIC 447

Query: 807 IFP 809
             P
Sbjct: 448 ELP 450



 Score = 41.2 bits (95), Expect = 0.71,   Method: Composition-based stats.
 Identities = 27/241 (11%), Positives = 68/241 (28%), Gaps = 14/241 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D  G +  ++    +  G     +      ++     +   + +   L++ ++   +  
Sbjct: 132 LDHVGRIVLLNRAAERLFGREQEAVRDKHFSELCGFEEL--GDLVTQALEKGSSGQIELA 189

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                 TN  + I     PI        G     + +             R +   +  H
Sbjct: 190 ------TNSKLMIRAQVSPISGERARSQGA--VIVCYDITEIRRLE--LLRTEFVGNVSH 239

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           E++   +S++     +    S  PHLR   +  ++      +   L  E   L   E   
Sbjct: 240 ELRTPLTSIKGFVETLLDGASEVPHLR--ERFLNIIHKETLRLQRLVDELLTLSRIENQR 297

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
               +    +       +          K   E    ++ P ++   D    +    ++ 
Sbjct: 298 QDAGQGMSKVQEAYEKIRPVIEPYAEAKKVELEIKIPKDLPEVAMGIDLLSQVLLNLMEN 357

Query: 329 C 329
            
Sbjct: 358 A 358


>gi|332669345|ref|YP_004452353.1| multi-sensor signal transduction histidine kinase [Cellulomonas
           fimi ATCC 484]
 gi|332338383|gb|AEE44966.1| multi-sensor signal transduction histidine kinase [Cellulomonas
           fimi ATCC 484]
          Length = 589

 Score =  303 bits (777), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 87/435 (20%), Positives = 184/435 (42%), Gaps = 46/435 (10%)

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV------------MQLCSI 457
           +  +     E   +         +  +     + + + +                QL SI
Sbjct: 172 AFVIAVTAHEVTERLRARTEAVAVMRDREQELLERMRADAFELARVADARRAARDQLVSI 231

Query: 458 LEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP---------- 506
           +++ +   I   +  G++   N    +L G+   D++ +     L+              
Sbjct: 232 IDSATQQAIIATDATGLVEVFNAGAERLLGFAQGDVVGRMRITDLDAGAEVVAPTPGRAP 291

Query: 507 -SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK----LPFSSCYSLTMHDI 561
            S     L  I++ D      +      ++   +++++ + +        + Y +   D+
Sbjct: 292 GSTAARLLESIVAPDGSGGFPRDRTYRRQDGSEVTVQLAVTRRLEVDGTVAGYVVVATDV 351

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           +  +              + +  K +F++ VSHE+RTPLT+++G+ E++ +         
Sbjct: 352 TADR--------------EAARLKDEFVSLVSHELRTPLTSVLGYLELLLDG--TDELTE 395

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
               Y   I+R+    L +V DLL  +++++G   +   P+ L + V  + + +   A +
Sbjct: 396 EQRSYLTVIERNARRQLRLVGDLLLTAQVDAGTFAISPRPIDLADVVRGSATSLGPVAEQ 455

Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
             + + TS A     ++AD   + Q+  N++SNA+ FTPSGG++ +    T +    + V
Sbjct: 456 AGVALVTSVAPT--PVVADPGRLAQVVDNLVSNAVKFTPSGGEVHLEVAPTPDGGAGVLV 513

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
           RDTG+G+   EL++    F +  ++ +    G GLGL +A+A+VDA+ G+  + ST  +G
Sbjct: 514 RDTGIGIAPDELQRLTTRFFRATSATRRAIPGVGLGLAIARAVVDAHGGRLDVESTLGEG 573

Query: 802 TLIEIIFPLYDTSHP 816
           T   +  P      P
Sbjct: 574 TTFVVTLPAAPPDRP 588



 Score = 40.4 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 25/241 (10%), Positives = 52/241 (21%), Gaps = 18/241 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGM--------RLCDVSDILHIDPNNHIGDLLK-- 138
            DA G ++  +    + +G     ++G             V+      P +    LL+  
Sbjct: 243 TDATGLVEVFNAGAERLLGFAQGDVVGRMRITDLDAGAEVVAPTPGRAPGSTAARLLESI 302

Query: 139 ----RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR 194
                   +    T    +G+   V + LA       +   +G+    +      D +  
Sbjct: 303 VAPDGSGGFPRDRTYRRQDGS--EVTVQLAVTRRLEVDGTVAGY--VVVATDVTADREAA 358

Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254
            L        SH             E     + +           +             L
Sbjct: 359 RLKDEFVSLVSHELRTPLTSVLGYLELLLDGTDELTEEQRSYLTVIERNARRQLRLVGDL 418

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
                    +   S    +    +  +  +              S         P   A 
Sbjct: 419 LLTAQVDAGTFAISPRPIDLADVVRGSATSLGPVAEQAGVALVTSVAPTPVVADPGRLAQ 478

Query: 315 F 315
            
Sbjct: 479 V 479


>gi|99080803|ref|YP_612957.1| PAS/PAC sensor hybrid histidine kinase [Ruegeria sp. TM1040]
 gi|99037083|gb|ABF63695.1| PAS/PAC sensor hybrid histidine kinase [Ruegeria sp. TM1040]
          Length = 823

 Score =  303 bits (777), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 111/590 (18%), Positives = 203/590 (34%), Gaps = 26/590 (4%)

Query: 230 PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYF 289
           P  H  + +  + +    A +   L ++    + +  S+  +   +          K   
Sbjct: 6   PIMHRWVISAAAVVLILLAAQAYRLGSDVQSRIEALSSAATDNLQWTLSQAEVDYLKYRS 65

Query: 290 GTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFL 349
             +    +     L  +     S      E+     V   P      + G L        
Sbjct: 66  AAMVVEDRSDLPRLRRQFDIYYSRIATFRESALYSEVRATPEG--SETLGRLQQGLQRQA 123

Query: 350 LLTKYKSVDDIEIAGGLSTLLDAP--KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
            L        +     L  L+      + D       +   +          L T     
Sbjct: 124 ALIDASDDVLLSEKENLLQLIAVDGNDVRDLALFGVALQAETAGAERVLLHTLFT----- 178

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
                +              + +     + +     +     E     +++ ++ D I +
Sbjct: 179 -RLAIVVLALLGTLALTALVILRLFRRGQRLSMLQAQEAARTE-----AMVTSSLDAILM 232

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
            + EG I + N A  ++FGY  E+ +   F   + Q+        L + L+ +  +    
Sbjct: 233 ADAEGRITAINGAAEEIFGYSEEEAIGMNFDSLILQSPEGAGAGDLDDFLNENDGR---F 289

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSLT--MHDISEWKQEKNKLSHAKKIAEKESSHK 585
                 K   ++ + + +          L   + DIS   Q + +L  A+  A      K
Sbjct: 290 QMTAQRKTGDVIPVEVSLTVSKSDGNQVLVSYVRDISHRLQAEEELRRARDDALAGEQAK 349

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
              L  +SHE+RTPLT I+G  +V++    G   +     Y   +  SG L+L  VND+L
Sbjct: 350 DRLLTVMSHEMRTPLTGILGSLDVLE----GLTPSAEQQRYLQAMRVSGELLLHHVNDVL 405

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSV 704
            +S++ESG          LDE V       Q  A      +    +      +    R V
Sbjct: 406 QLSRLESGAEADAPIRFDLDELVRGIGESQQANAARNNNDLSVFCSLGAETGVEGHCRYV 465

Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764
           +Q+ LN++ NA+ FT  G  + +    T  + V   V DTG G+   +LE+    F  + 
Sbjct: 466 QQVLLNLIGNALKFTQDGA-VSVDVMRTEGDLVEFSVADTGKGIAAEDLERIFDEFTMVD 524

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
            +     EGTGLGL +++ +     G+    S P +G+L     PL   +
Sbjct: 525 PNYNRGCEGTGLGLAISRRLARLMGGEITCESEPGEGSLFSFTIPLPPVA 574



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 60/593 (10%), Positives = 139/593 (23%), Gaps = 47/593 (7%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI-LHIDPNNHIGDLLKRQNTWYGKTT 148
           DA G +  I+    +  G    + IGM    +            + D L   +  +  T 
Sbjct: 234 DAEGRITAINGAAEEIFGYSEEEAIGMNFDSLILQSPEGAGAGDLDDFLNENDGRFQMTA 293

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                 T   +P++++     S   +         V             +R         
Sbjct: 294 QRK---TGDVIPVEVSLTVSKSDGNQVL----VSYVRDISHRLQAEEELRRARDDALAGE 346

Query: 209 EIKKGHSSVEKEKYD---------------IFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253
           + K    +V   +                 +        +L+       L  ++ +    
Sbjct: 347 QAKDRLLTVMSHEMRTPLTGILGSLDVLEGLTPSAEQQRYLQAMRVSGELLLHHVNDVLQ 406

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS--L 311
           L   +              E    I  +Q           +             H     
Sbjct: 407 LSRLESGAEADAPIRFDLDELVRGIGESQQANAARNNNDLSVFCSLGAETGVEGHCRYVQ 466

Query: 312 SAYFDEGENLTPETVD-KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
               +   N    T D    +         + +   S     K  + +D+E        +
Sbjct: 467 QVLLNLIGNALKFTQDGAVSVDVMRTEGDLVEF---SVADTGKGIAAEDLERIFD-EFTM 522

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
             P  +       + L  S R        +       E SL    IP             
Sbjct: 523 VDPNYNRGCEGTGLGLAISRRLARLMGGEITCESEPGEGSLFSFTIPLPPVALEQGKPVF 582

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490
               P      +     +I  + L ++L          +    ++S N     +      
Sbjct: 583 AADAPTRQQRLLVIEDNDINRLLLETMLN---------DMGHEVVSVNGGARAIEEIRTH 633

Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
                   + +       +   +      +    +      +  + + +      + L  
Sbjct: 634 RFDLIISDISMPDIDGMEVLRRVRAEQLANDTDIVALTAHAARDDHERILAAGFAEVLTK 693

Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
               +     +   ++     +          S  S F+A V      P  A    +E  
Sbjct: 694 PIDRAALAEMV--LRRSAADAAAPIPAQYPGESDISQFVAAVG-----PEKARHFLAEFR 746

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
            + R       + +E  +   +  + +      +L ++ + S  + +     +
Sbjct: 747 DDVRALREALTQSVELTDQHRKEAHRLAG-SAAVLGLATLRSSMLEIEQANTN 798


>gi|207744619|ref|YP_002261011.1| composite two component regulatory protein (sensor histidine kinase
           and response regulator hybrid) [Ralstonia solanacearum
           IPO1609]
 gi|206596025|emb|CAQ62952.1| composite two component regulatory protein (sensor histidine kinase
           and response regulator hybrid) [Ralstonia solanacearum
           IPO1609]
          Length = 1003

 Score =  303 bits (777), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 106/622 (17%), Positives = 203/622 (32%), Gaps = 38/622 (6%)

Query: 220 EKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTIN 279
                  +++    L     ++ LT     + D        +      S           
Sbjct: 11  AAPVHLWRRAGTALLLCATAIALLTASDYTQADDATRALRQMGPPPAPSAAAPMARCAPA 70

Query: 280 LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH- 338
                      ++++           R      A      +     ++  P P       
Sbjct: 71  AAIVLWTLTVLSIRHMQLRRET----RQRRHTEATLARQLDFQHMLMESLPFPLAAQDTQ 126

Query: 339 GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398
                 N +F  L        +        L           ++ +          A  A
Sbjct: 127 HRYVAVNAAFCHLFGRSREAVLGRTPAHLGL---GCARTTARVQDIDRRAVATGQDAREA 183

Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI----EPEDVDTRINKRKMEIEVMQL 454
              T    RE  +     P    +  P     + I         + R  + + + +  +L
Sbjct: 184 LTITAADGRERRVLYWVAPLRLPDGQPGGTVASLIDLSNLSNLSEIREAQARAKRQAQRL 243

Query: 455 CSILEATSDGIAII-----NREGIILSTNRAVSKLFGYPVEDILRK--PFTVFLEQNTPS 507
              +E+    +  +        G I     +  +  G   +            + Q+   
Sbjct: 244 HDSIESLPALVCQVEMRPGTTRGRIRYMAGSARETLGAQTDAAPFLLPSPARLVHQDDRR 303

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---YSLTMHDISEW 564
            M+     + S      L++       +  +  L               ++  + D+++ 
Sbjct: 304 RMHDA--ALQSATQLTPLDQPFRHVGGDGSVRWLHAHALPRREPDGRTVWTGYLRDVTQE 361

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           +   + L  A++ AE     K  FLA +SHEIRTP+  ++G  E++              
Sbjct: 362 RARADALEAARQAAESALHAKDRFLATMSHEIRTPMNGVLGLVELLLQTPLER----EQQ 417

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
                   S   +L I++D+LD +KIE+G + +   P  L E     + L+   A+E+ +
Sbjct: 418 RMVTLAQESSRALLHILDDILDYAKIEAGHLAVTPAPTDLRELFDSTVGLLAGRAHERSL 477

Query: 685 LIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH----TSNEEVIL 739
            +R      +P  +  D   ++Q+  N+LSNAI FT  G  + +S       T    +I+
Sbjct: 478 SVRVEVDAAVPATVSVDGMRLRQVLSNLLSNAIKFTERGS-VHLSAACVGAATDTAHLII 536

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
           R+ DTG+G+          PF Q  +    R  GTGLGL +++ +     G   + STP 
Sbjct: 537 RIADTGIGIAPEAQATLFTPFVQADSPAARRHGGTGLGLAISRQLARLMGGSLDMDSTPG 596

Query: 800 KGTLIEIIF--PLYDTSH--PH 817
            GT + +    P+ +  +  PH
Sbjct: 597 VGTTLTLRLETPVINARYRRPH 618



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/257 (8%), Positives = 57/257 (22%), Gaps = 19/257 (7%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS---DILHIDPNNHIGDLLKRQNTWYGK 146
           D       ++       G     ++G     +            +     +         
Sbjct: 124 DTQHRYVAVNAAFCHLFGRSREAVLGRTPAHLGLGCARTTARVQDIDRRAVATGQDAREA 183

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI--------VHVNRVDNDPRALGK 198
            T+   +G    V   +A  P+   + +  G     I          +       +   +
Sbjct: 184 LTITAADGRERRVLYWVA--PLRLPDGQPGGTVASLIDLSNLSNLSEIREAQARAKRQAQ 241

Query: 199 RLDKKFSHLHEIKKGH---SSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA---HKDD 252
           RL      L  +           + +    +  +        +    L    A   H+DD
Sbjct: 242 RLHDSIESLPALVCQVEMRPGTTRGRIRYMAGSARETLGAQTDAAPFLLPSPARLVHQDD 301

Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
             +     L ++ + +  +Q   H                +        +  +    +  
Sbjct: 302 RRRMHDAALQSATQLTPLDQPFRHVGGDGSVRWLHAHALPRREPDGRTVWTGYLRDVTQE 361

Query: 313 AYFDEGENLTPETVDKC 329
               +      +  +  
Sbjct: 362 RARADALEAARQAAESA 378


>gi|147528|gb|AAA24505.1| capsular sunthesis regulator component C [Escherichia coli]
          Length = 933

 Score =  303 bits (777), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 97/427 (22%), Positives = 172/427 (40%), Gaps = 35/427 (8%)

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
           +     L  I+      + +  I                 E        +      E  Q
Sbjct: 287 VPVDKVLERIRM-----VILNAILLNVLAGAALFTLARMYERRIFIPAESDALRLEEHEQ 341

Query: 454 L-CSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
               I+ +   GI I+   +G+ + +N            +  ++                
Sbjct: 342 FNRKIVASAPVGICILRTADGVNILSNELAHTYLNMLTHEDRQR---------------- 385

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571
            LT+I+       ++      T     L +  +  +    +     + D+S   + +  L
Sbjct: 386 -LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSSRVKMEESL 440

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
               + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R       ++
Sbjct: 441 QEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR---LVTAMN 496

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
            S +L+L I++D+LD SKIES ++ +     S  E ++   +        K++ +     
Sbjct: 497 NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFIE 556

Query: 692 NNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
            ++P  +  D   ++Q+  N+LSNAI FT +G  I++       + + +RVRDTGVG+  
Sbjct: 557 PDVPVALNGDPMRLQQVISNLLSNAIKFTDTG-CIVLHVR-ADGDYLSIRVRDTGVGIPA 614

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+   +  PL
Sbjct: 615 KEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIPL 674

Query: 811 YDTSHPH 817
           Y   +P 
Sbjct: 675 YGAQYPQ 681


>gi|313499779|gb|ADR61145.1| Virulence sensor protein bvgS [Pseudomonas putida BIRD-1]
          Length = 1210

 Score =  303 bits (777), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 120/677 (17%), Positives = 231/677 (34%), Gaps = 40/677 (5%)

Query: 149 LWPIEGTNLYVPIDLAALPI--YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
            W  +   + V  D AA P+  +  +  F G            D       +   +    
Sbjct: 295 QWLEKHPVMRVAADDAAAPLSYFDDSGHFRG---------ITADLLDLIRLRTGLRFEVQ 345

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
                    +  K+                 +   S     +    V   +   L + E+
Sbjct: 346 RASGIADMVARLKDGRADVIAALASAGKAGDDLQISRPYLESAYVLVNHKDNNTLSSLEQ 405

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
                        +N    + Y       ++ +F  ++  N  ++ A      +      
Sbjct: 406 LQGHRIAITRYSTMNAMLSRDYPKISWVETESAFYSMALLNSGAVDAVITTLIDANHALA 465

Query: 327 DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
              P      S G+   AN +            +      + L  +P+       +    
Sbjct: 466 SN-PELVIRTSVGS-EPANFAMA---TTAPSPALLSILDKALLSISPEELGVINNRWRGF 520

Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
            R +                  + LA+  +           +    +  +    +  +R 
Sbjct: 521 GRHEDDNT-----------KGYSRLALQVVLATAVLLLLALLWNARLRLQIRQRQRAERA 569

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF--TVFLEQN 504
           +  ++  + ++L  T   + + +REG + S N +  +      + ++ K    ++F +  
Sbjct: 570 LNDQLAFMRALLNGTPHPMYVRDREGCLKSCNYSYLEAVQARSDQVIGKKLKDSLFADSE 629

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL-SLRIIIKKLPFSSCYSLTMHDISE 563
               +     ++++       ++      ++  +   +      L           DISE
Sbjct: 630 QARQIQADYQKVMAAGSPLIKDRPLRIKDRDLTIYHWILPYRDSLGEVQGIIGGWIDISE 689

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            +Q   +L  AK+ A+  +  KS FLA +SHEIRTP+ A+IG  E+   +      +   
Sbjct: 690 RRQLVLELRQAKQQADDANRAKSTFLATISHEIRTPMNAVIGMLELAVKRADQGRVD--- 746

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
                    S   +L ++ D+LDI +IESG ++L  E V L   V     +    A +K 
Sbjct: 747 RSALELAHHSAKDLLGLIGDILDIVRIESGHLSLAPEVVDLAALVESVARIFDGQARQKG 806

Query: 684 ILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-----V 737
           + +    A      +L D    KQ+  N++SNAI FT  G Q+ I      +       +
Sbjct: 807 LALEVQIAPAARCHVLLDPLRFKQVLSNLVSNAIKFTEHG-QVRICVRLLDDGTSTPAVL 865

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
            L VRD+G+G+   +L++   PF Q     Q    GTGLGL + + + +   G   + S 
Sbjct: 866 ELEVRDSGIGIHPDDLQRLFNPFIQANPHSQGARAGTGLGLAICRNLCEMMGGSLSMKSL 925

Query: 798 PAKGTLIEIIFPLYDTS 814
              GT + +  PL    
Sbjct: 926 EDVGTQVRLKMPLQRVD 942



 Score = 39.6 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 28/252 (11%), Positives = 63/252 (25%), Gaps = 24/252 (9%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD----LLKRQNTWY- 144
           D  G LK  +    + +   + ++IG +L D S     +    I      ++   +    
Sbjct: 592 DREGCLKSCNYSYLEAVQARSDQVIGKKLKD-SLFADSEQARQIQADYQKVMAAGSPLIK 650

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            +          +Y  I    LP      E  G  G  I              ++  ++ 
Sbjct: 651 DRPLRIKDRDLTIYHWI----LPYRDSLGEVQGIIGGWI--DISERRQLVLELRQAKQQA 704

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
              +  K    +    +                  V  + E    + D  + ++  L  +
Sbjct: 705 DDANRAKSTFLATISHEIRTPMNA-----------VIGMLELAVKRADQGRVDRSALELA 753

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
             S+         I      +  +  +L     +    +             +G  L  +
Sbjct: 754 HHSAKDLLGLIGDILDIVRIESGHL-SLAPEVVDLAALVESVARIFDGQARQKGLALEVQ 812

Query: 325 TVDKCPIPFFVY 336
                     + 
Sbjct: 813 IAPAARCHVLLD 824


>gi|301647691|ref|ZP_07247485.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 146-1]
 gi|301074221|gb|EFK89027.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 146-1]
 gi|315615480|gb|EFU96112.1| sensor kinase protein rcsC [Escherichia coli 3431]
          Length = 933

 Score =  303 bits (777), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 98/427 (22%), Positives = 172/427 (40%), Gaps = 35/427 (8%)

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
           +     L  I+      L +  I                 E        +      E  Q
Sbjct: 287 VPVDKVLERIRM-----LILNAILLNVLAGAALFTLARMYERRIFIPAESDALRLEEHEQ 341

Query: 454 L-CSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
               I+ +   GI I+   +G+ + +N            +  ++                
Sbjct: 342 FNRKIVASAPVGICILRTADGVNILSNELAHTYLNMLTHEDRQR---------------- 385

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571
            LT+I+       ++      T     L +  +  +    +     + D+S   + +  L
Sbjct: 386 -LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSSRVKMEESL 440

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
               + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R       ++
Sbjct: 441 QEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR---LVTAMN 496

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
            S +L+L I++D+LD SKIES ++ +     S  E ++   +        K++ +     
Sbjct: 497 NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFIE 556

Query: 692 NNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
            ++P  +  D   ++Q+  N+LSNAI FT +G  I++       + + +RVRDTGVG+  
Sbjct: 557 PDVPVALNGDPMRLQQVISNLLSNAIKFTDTG-CIVLHVR-ADGDYLSIRVRDTGVGIPA 614

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+   +  PL
Sbjct: 615 KEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIPL 674

Query: 811 YDTSHPH 817
           Y   +P 
Sbjct: 675 YGAQYPQ 681


>gi|212634200|ref|YP_002310725.1| hybrid sensory histidine kinase BarA [Shewanella piezotolerans WP3]
 gi|212555684|gb|ACJ28138.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase, HAMP region:Histidine
           kinase A:Hpt [Shewanella piezotolerans WP3]
          Length = 935

 Score =  303 bits (777), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 85/252 (33%), Positives = 131/252 (51%), Gaps = 10/252 (3%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  AKK A + S  KS+FLA +SHE+RTPL  +IGF++ +         +    +Y   
Sbjct: 288 ELDMAKKRALEASRIKSEFLANMSHELRTPLNGVIGFAKQLLKTPL----HSSQQDYIRT 343

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I+RS   +L I+ND+LD SK+E+GKM L   P SL E + E ++++   A EK I +   
Sbjct: 344 IERSATNLLSIINDILDFSKLEAGKMVLENMPFSLREVIEETVTMLSSSAREKEIDLVID 403

Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS--NEEVILR--VRDT 744
               IP  +  D     Q+  N++ NA+ FT SG  + +        +  V +R  + DT
Sbjct: 404 VDPRIPEDVTGDAMRFSQVITNLVGNAVKFTDSGS-VQLKMQLEEIADGSVHVRTEIIDT 462

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G+   +L    + FGQ  +S   R  GTGLGL + K +V+   G+    S P +G+  
Sbjct: 463 GIGIDADKLASLFQAFGQADSSISRRFGGTGLGLVITKRLVNRMGGQIGCNSEPQQGSTF 522

Query: 805 EIIFPLYDTSHP 816
               PL  + +P
Sbjct: 523 WFSLPLNLSQYP 534


>gi|196039037|ref|ZP_03106344.1| sensor histidine kinase ResE [Bacillus cereus NVH0597-99]
 gi|196030182|gb|EDX68782.1| sensor histidine kinase ResE [Bacillus cereus NVH0597-99]
          Length = 591

 Score =  303 bits (777), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 82/371 (22%), Positives = 155/371 (41%), Gaps = 39/371 (10%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            ++ E  QL SIL + +DG+  +N+EG ++  N           E+       V L +  
Sbjct: 249 ALQQEKEQLASILSSMADGVITLNQEGEVVVINPPAEHFLQVWQEEK-----EVELSKKL 303

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
           PS +      ++  + +Q +E        +   + L   +            + D++E +
Sbjct: 304 PSELVELFHLVVESEQQQVVEINLQ----KGNYVVLMTPLYNQTKIRGAVAVLRDMTEER 359

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + +                + DF+A VSHE+RTP+  + G+SE I +            E
Sbjct: 360 RLE--------------KMRQDFIANVSHELRTPMVMLQGYSEAILDDIVQT--KEEINE 403

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           +   I      +  +VN+LLD++++ESG + LH   V +   V +     Q  A +K + 
Sbjct: 404 FVQIIYDESVRLGKLVNELLDLARMESGNVELHIGEVDIHPFVEKIGRKFQGIAKDKEVA 463

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +   F + I +   D   ++Q+  N++ NAI  T +GG + +     +N  +I  V+D+G
Sbjct: 464 LTVDFKDPIEQYPFDADRMEQVLTNLIDNAIRHTNAGGHVTLVIDTKNNG-LIFEVQDSG 522

Query: 746 VGMTNYELEKAMKPFGQIPNSQQI-------RGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           VG+   ++      F +   ++          G        +AK +V  + GK  + S  
Sbjct: 523 VGIPEEDIPFLFDRFYKADKARTRGKKGGTGLGL------AIAKNIVQGHDGKIAVSSVV 576

Query: 799 AKGTLIEIIFP 809
            +GT   +  P
Sbjct: 577 GEGTTFSVYLP 587


>gi|156743358|ref|YP_001433487.1| multi-sensor signal transduction histidine kinase [Roseiflexus
           castenholzii DSM 13941]
 gi|156234686|gb|ABU59469.1| multi-sensor signal transduction histidine kinase [Roseiflexus
           castenholzii DSM 13941]
          Length = 899

 Score =  303 bits (777), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 104/697 (14%), Positives = 233/697 (33%), Gaps = 72/697 (10%)

Query: 127 IDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHV 186
           +D    +   L         T      G        LA  P+   N +  G+   G+   
Sbjct: 250 LDMPPQVLQALLSGQAQSIFTVELRQRG------YQLAYSPLVIANAQV-GYFSVGLSRD 302

Query: 187 NRVDNDPRALGKRLD-KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE 245
            +V     +    +          +  G+    +    +    +    +   +  +  T 
Sbjct: 303 FQVQQLSLSRNVVVAIAMVLAAGSVILGYQIARRITRPLSDLVATAEAVTGGDLEARSTV 362

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
               +   L      +            D +         K    ++++   +       
Sbjct: 363 MSPDEFGRLALAFNQMTEHLARLYRTSRDLNQAIEVTPVLKVTERSVRSLLPDIDVLALI 422

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDD------ 359
               +L  + DE       ++    +P        L     +   + +    ++      
Sbjct: 423 AEEGALRYHIDEELPGIVRSLRHIRVPL----SDPLVQELAAIQRVVQVSPDEEPRLASF 478

Query: 360 -IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
            +    G  +L+ +P +        ++L   +                            
Sbjct: 479 GLTQVAGYQSLILSPLVVQGEPAGLLILAHRNPHAFD--------------------SSI 518

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
             +     NM  + +    +  R+    +        +ILE+ +DG+ +++R+  I+  N
Sbjct: 519 LPSLIAIANMTTSVLYNAVLFDRVQSEALRR-----RAILESIADGVIVLDRQRYIVIVN 573

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
           RA  ++        +R+ F+          + H +        R+            +++
Sbjct: 574 RAAEQMLNMHDWQFVRRSFSEI--PLVRVNVRHEVFSENGTGHREHFRF-------GDRV 624

Query: 539 LSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
           LSL                + +HDIS                      K+DF+A VSHE+
Sbjct: 625 LSLSSAPVITGEGYQIGEVVVLHDIS--------------AEAAVDRAKTDFIATVSHEL 670

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           R+PLT I G+ +++     G L   +Y +    +     L+ +IV +++ ++ IE+  + 
Sbjct: 671 RSPLTVIYGYVDLLLRGLVGELSGDQY-DLLEAVRNRVELMNNIVKNVILVASIEANTLQ 729

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716
               P  +   + E I+ ++     K + +  +  +++P + AD   +  I   ++ NA 
Sbjct: 730 TDLAPQDVRRLIDETIAPMRKAFERKGLTLTVNTPDDLPPVRADREQLMIILGQVIDNAR 789

Query: 717 HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
            +TP G ++ I+     +  V + V DTG G+   ++ +    F ++  +      G+GL
Sbjct: 790 RYTPQG-EVAITAHRRDDGMVQIDVADTGPGIPADQMPRLFTRFFRVEGNNSPE-RGSGL 847

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
           GL + + +V+ + GK +  S   +G+   I  P+   
Sbjct: 848 GLVITRQLVERHGGKVWAQSEVGRGSTFSIALPIAHE 884


>gi|75910540|ref|YP_324836.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
 gi|75704265|gb|ABA23941.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
          Length = 759

 Score =  303 bits (777), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 91/631 (14%), Positives = 215/631 (34%), Gaps = 54/631 (8%)

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
            LH +++   +++    D +    PP  + + +     ++           E   L    
Sbjct: 34  ELHPVERLSEALKILASDTYDGSLPPFDVMLLDLSLPDSQGIDT-FVRANRETNLLPIIV 92

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
            + + ++    T            G +  +        +      +       E      
Sbjct: 93  LTGIDDENLALTAMQKGAQDYLVKGQVTGDLLVRSIRYAI-ERQRVEEALRHSEERFRVA 151

Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
           +   P   FV++          +  +  +   + +             +         + 
Sbjct: 152 LKNSP--IFVFNQDRDLRYTWIYNPIAGWTVEEMLGKQDSEIMSEQDAQCLTAIKYHVLT 209

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
                R  ++    L T  ++               N+  + +       +  + ++ + 
Sbjct: 210 TGIGTRQVVSIGTLLGTKYYD--------LTVEPLRNESQDIVGITCACIDISERKLAEA 261

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           K+  +     ++L+ T+DGI + + E  IL  N+    L+G+   +++ K  +  L +  
Sbjct: 262 KIREQ----AALLDITTDGICVRDLENKILFWNKGAENLYGWQAHEVISKNASDLLFREP 317

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDI 561
              +   L  ++S       +      TK  K + +      +               DI
Sbjct: 318 SLEVETALLNVISQGN---WQGELNKVTKTGKEIVVASRWSLVYDEQGKPKSILSVDTDI 374

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           ++ K  + +L   +++            + ++H++   LT I+  ++++      P  + 
Sbjct: 375 TQKKHLEAQLFRTQRL-----ESIGTLASGIAHDLNNILTPILAGAQLL--PLKFPDADE 427

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
           R       ++ +     D+V  +L  ++   GK       + L   + E + +++     
Sbjct: 428 RTQHLLEILEINAKRGADLVKQVLSFARGVEGK----RITLQLKHLIVEVVKILKETFP- 482

Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS------------- 728
           K I + T   N++  +  D   + Q+ +N+  NA    P+GG + IS             
Sbjct: 483 KSIEVYTDIPNDLWMVSGDSTQLHQVLMNLCVNARDAMPNGGTLTISAENLLIDENYARM 542

Query: 729 -TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
                    +++ V DTGVG++   L++  +PF          G+GTGLGL     +V +
Sbjct: 543 NLEAKQGHYIMVTVSDTGVGISPENLDRIFEPFFTTKA----VGQGTGLGLSTVLGIVKS 598

Query: 788 NMGKFYIFSTPAKGTLIEIIFP-LYDTSHPH 817
           + G   ++S   +GT  ++  P +     PH
Sbjct: 599 HGGFVNVYSEEGRGTTFKVYLPSVGGMEAPH 629


>gi|229043318|ref|ZP_04191038.1| hypothetical protein bcere0027_13700 [Bacillus cereus AH676]
 gi|228726032|gb|EEL77269.1| hypothetical protein bcere0027_13700 [Bacillus cereus AH676]
          Length = 591

 Score =  303 bits (776), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 80/371 (21%), Positives = 153/371 (41%), Gaps = 39/371 (10%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            ++ E  QL SIL + +DG+  +N+EG ++  N           E+       + L +  
Sbjct: 249 ALQQEKEQLASILSSMADGVITLNQEGEVVVINPPAEHFLQVWQEEK-----EIELSKKL 303

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
           PS +      ++  + +Q +E        +   + L   +            + D++E +
Sbjct: 304 PSELVELFHLVVESEQQQVVEINLQ----KGNYVVLMTPLYNQTKIRGAVAVLRDMTEER 359

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + +                + DF+A VSHE+RTP+  + G+SE I +            E
Sbjct: 360 RLE--------------KMRQDFIANVSHELRTPMVMLQGYSEAILDDIVQT--KEEIDE 403

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           +   I      +  +VN+LLD++++ESG + LH   V +   V +     Q  A +K + 
Sbjct: 404 FVQIIYDESVRLGKLVNELLDLARMESGHVELHIGEVDIHPFVEKIGRKFQGIAKDKEVA 463

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +   F   I +   D   ++Q+  N++ NAI  T +GG + +     +N  +I  V+D+G
Sbjct: 464 LTVDFKGPIEQYPFDADRMEQVLTNLIDNAIRHTNAGGHVTLVIDMKNNG-LIFEVQDSG 522

Query: 746 VGMTNYELEKAMKPFGQIPNSQQI-------RGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
            G+   ++      F +   ++          G        +AK +V  + GK  + S  
Sbjct: 523 AGIPEEDIPFLFDRFYKADKARTRGKKGGTGLGL------AIAKNIVQGHDGKISVSSVV 576

Query: 799 AKGTLIEIIFP 809
            +GT   +  P
Sbjct: 577 GEGTTFSVYLP 587


>gi|218898733|ref|YP_002447144.1| sporulation kinase A [Bacillus cereus G9842]
 gi|228959824|ref|ZP_04121499.1| hypothetical protein bthur0005_32990 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|218544091|gb|ACK96485.1| sporulation kinase A [Bacillus cereus G9842]
 gi|228799954|gb|EEM46896.1| hypothetical protein bthur0005_32990 [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 510

 Score =  303 bits (776), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 97/523 (18%), Positives = 196/523 (37%), Gaps = 39/523 (7%)

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDD 359
            + +                +     +  P     +   G + + NPS   +  Y S++ 
Sbjct: 13  RHPNISRRLRNHIQDRSLTEMYASLFEHNPDSIISLNLEGVILHINPSAERILGYTSLE- 71

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
           +E     S L       + +  + V+    +         + +I       L +      
Sbjct: 72  LEQKNITSIL-------EAHISEQVLQNIKNTEADNQQEYILSIYHKNGFLLDVVTKLVP 124

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
              Q         ++P +   RI +  ++    +L +++ +    +   + EG  L  N 
Sbjct: 125 IFVQNRLTGVYAIMKPLEKSERI-ENMLKESEKRLRTLVNSMPAFVIFKDHEGRWLEAND 183

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMN----HYLTEILSLDLRQTLEKITLGSTKE 535
                F +       K  +  ++ N            + E+     RQ L        ++
Sbjct: 184 YALSCFNFHHVPYHGKKDSELIQYNEAYREAFLHCEEIDELAWQ-QRQILHGEEFIIHRD 242

Query: 536 EKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
           +  L L I    L           +   D++E K+ +  L  ++K+A           A 
Sbjct: 243 DFDLILSISKVPLYHPDGSRKGLIVMGRDVTELKETEKLLRKSEKLAVV-----GQLTAG 297

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           ++HEIR PLT++ GF  ++      P  N     Y + +    + +  I +  + +SK +
Sbjct: 298 IAHEIRNPLTSLKGFLTLLL-----PEINEEQKWYIDVMLSEISQMESITSQFMAMSKPQ 352

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
                L  +  ++   + E ++ +   A    + I     + +  I  D   +KQ+ +NI
Sbjct: 353 ----VLSIQTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYVYDIQCDGNQLKQVFINI 408

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           L NAI   P+GG I I T    +  +++R+ D G G+    + +  +PF        ++ 
Sbjct: 409 LKNAIEAMPNGGNIFIQTKPLEDNFILIRIIDEGCGIPEDRISRLGEPFY------SLKE 462

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           +GTGLGL +   +++ + GK +I S   KGT+++I  PL  + 
Sbjct: 463 KGTGLGLMMCYKIIEEHHGKLHISSELNKGTIVDIELPLSSSH 505


>gi|167614786|ref|ZP_02383421.1| two-component system sensor protein [Burkholderia thailandensis
           Bt4]
 gi|257141372|ref|ZP_05589634.1| two-component system sensor protein [Burkholderia thailandensis
           E264]
          Length = 987

 Score =  303 bits (776), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 128/679 (18%), Positives = 230/679 (33%), Gaps = 63/679 (9%)

Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH 233
            F   +G+ ++H  +      ALG     +          + ++ + +  +   QSP P 
Sbjct: 85  RFDAHQGYAVLHTPQGAPAALALGIPAPGRS---ASTFAPYLALLETQLLMGDGQSPLPD 141

Query: 234 LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293
            R++    S    Y       + +         S+                 +     + 
Sbjct: 142 DRVEGYSFSPDGTYLSLLWSREDQAPEAFIESHSASG---VIGDAMRGIRYLRDASTIIP 198

Query: 294 NNSKESFEYLSHRNHP--------SLSAYFDEGENLTPETVDKCPIPFF----------- 334
             +     +L     P         +    D    L    V   P+  F           
Sbjct: 199 LRADRRTVWLPPHPDPLTGKPMIRVVQPAIDAAGKLFAIYVRSLPLDMFYSNLNDTPAGG 258

Query: 335 ----VYSHGNLFY--ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388
               V   G +     NP         S   I   G                 +  M   
Sbjct: 259 TLTIVDRKGRVIIGSWNPPGRDGDVTDSALSIRSLG-------DGFDGLVERHENGMFVT 311

Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR------I 442
           SD+        +H   W    + A+              +    +     D +       
Sbjct: 312 SDQLPGTDWVLVHAYSWK-TIAAALALRFSLMTGFAAGIIVMLWVLAIQFDRKGLIPNYR 370

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
             +++    +   +IL     G+ +++  +G +L  N A+ +L      + L        
Sbjct: 371 RAQRLLESEVLNRAILRTAPVGLGLLSAHDGSVLLQNNAMLELSARTSGEPLPNRLWDAY 430

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDI 561
            Q T    +               +            L   ++  +   ++    T+ DI
Sbjct: 431 RQTTGRSNDE-------DGALLLHDLAIEREDSNPIYLQANVVAARYRGANVLLCTLLDI 483

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           S  K+ + KL  A+  +++ +  KS FLA +SHEIRTPL AIIG  E+++  +     + 
Sbjct: 484 SMRKESELKLKEARIASDQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSQLSNQQSE 543

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
           R       ++   N +L I+ND+LD+SK+ESG+M L   P  +   + E +      A  
Sbjct: 544 R----LQVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIQALLQEIVDAYAPLAES 599

Query: 682 KRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIST----THTSNEE 736
           K + + ++    + R    D   ++QI  N++ NAI FT  G  I +          +  
Sbjct: 600 KGLQLLSNLGEGVARYYSGDPARIRQILSNLIGNAIKFTERG-HISVDVHQAKAAQGDSA 658

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           + + V DTG+G+    +      + Q   S   R  G+GLGLPL K +     G   + S
Sbjct: 659 IEIWVNDTGIGIRPDRIATLFDVYTQADTSIHRRFGGSGLGLPLCKRLATIMGGSIEVDS 718

Query: 797 TPAKGTLIEIIFPLYDTSH 815
            P  GT + ++ PL +  H
Sbjct: 719 LPDFGTTVTVVLPLREARH 737


>gi|332524883|ref|ZP_08401070.1| multi-sensor hybrid histidine kinase [Rubrivivax benzoatilyticus
           JA2]
 gi|332108179|gb|EGJ09403.1| multi-sensor hybrid histidine kinase [Rubrivivax benzoatilyticus
           JA2]
          Length = 893

 Score =  303 bits (776), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 122/658 (18%), Positives = 211/658 (32%), Gaps = 52/658 (7%)

Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD 251
           DP A    + +           H  +      +      P  +             A   
Sbjct: 91  DPSASLDEMRRLGESYARGYGSHVLLVDADGRVAMNSRLPQDVEQPPLPRPAALDAAQAA 150

Query: 252 DVLKT-----------EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF 300
                              P+++      PE      + L+     Q+   L+       
Sbjct: 151 LREGRPVVGNLFVGPIAGVPIVSVAVPLPPEPGRSPRLLLSTIEASQFQPLLERLLLPPG 210

Query: 301 EYLSHRNHPSLSAYFDEGE------NLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKY 354
             L  R+    +              L    +++      V     + +   +   L   
Sbjct: 211 WSLELRDAAGQAVARRGEPIVGEDGRLRSAALERASWTAVVRIPPQVLHDAVAAEALPLV 270

Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
             V    + G L   +   +L  + A         +     A       Q +        
Sbjct: 271 AGVLGATLIGVLGGTIAGRRLGRDVASLAAPAGTPEAQSGVAEIAAVRRQLDDAAQRRRL 330

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII 474
                + +Q    +  +               +     +L   +E TS  I I + E  I
Sbjct: 331 SEDALRRSQLQTQLSMDEAVSARARAEAAAASLR----ELSLAVEQTSSSIVITDPEARI 386

Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
              N+A     GY  E+IL           TP+     L   L     +T     +   K
Sbjct: 387 QYVNQAFLDQTGYSREEILGSTPERLRSARTPADTVASLWRTLQAG--ETWRGEFVNRRK 444

Query: 535 EEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSH------ 584
           +        ++  L         +     DI+E ++ + +L   +   E   +       
Sbjct: 445 DGSEYVESAVVTPLRSPEGRVTHFVAVSEDITERRRLERELDGHRHHLEMLVASRTAELE 504

Query: 585 ------------KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
                       KS FLA +SHEIRTPL AI+GF+ +++      +   R       +D 
Sbjct: 505 AARAQADAASQAKSAFLANMSHEIRTPLNAILGFTHLMRRDAPDAVTAER----LARVDG 560

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
           +   +L ++ND+LD+SKIE+G++ LH    SL E VS  I  V   A  K + + +   +
Sbjct: 561 AAQHLLAVLNDILDLSKIEAGRLELHEHDFSLRELVSRCIEQVAERARTKALRLESDVDD 620

Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVI--LRVRDTGVGMT 749
               +  D   + Q  LN+LSNA+ FT  GG  + +         +     V DTG+G+ 
Sbjct: 621 VPDVLFGDSMRIAQALLNLLSNAVKFTEQGGVSLQVRLLAREGPWLQLGFTVADTGIGIE 680

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
             +L +    F Q   +   R  GTGLGL + + +     G   + S   +G+     
Sbjct: 681 AAKLGQLFTAFAQADATMARRFGGTGLGLAITRRLALLMGGDVAVDSRVGEGSRFSFS 738



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 39/405 (9%), Positives = 86/405 (21%), Gaps = 53/405 (13%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKRQNTWYGKT 147
            D    ++ +++      G    +++G     + S     D    +   L+   TW G+ 
Sbjct: 380 TDPEARIQYVNQAFLDQTGYSREEILGSTPERLRSARTPADTVASLWRTLQAGETWRGEF 439

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                +G+       +   P+ S     + F    +                       L
Sbjct: 440 VNRRKDGSEYVESAVV--TPLRSPEGRVTHF--VAVSEDITERRRLERELDGHRHHLEML 495

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
              +       + + D  SQ        M +++             L     P   + E 
Sbjct: 496 VASRTAELEAARAQADAASQAKSAFLANMSHEI-RTPLNAILGFTHLMRRDAPDAVTAER 554

Query: 268 SLPEQEDFHTI-------------NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA- 313
                     +                +    ++  +L+       E ++ R        
Sbjct: 555 LARVDGAAQHLLAVLNDILDLSKIEAGRLELHEHDFSLRELVSRCIEQVAERARTKALRL 614

Query: 314 ----------YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLL-------TKYKS 356
                      F +   +    ++           G +                      
Sbjct: 615 ESDVDDVPDVLFGDSMRIAQALLNLLSNAVKFTEQGGVSLQVRLLAREGPWLQLGFTVAD 674

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPV-----------MLYRSDRTCIAASARLHTIQW 405
                 A  L  L  A   +D    +              L       +A  +R+     
Sbjct: 675 TGIGIEAAKLGQLFTAFAQADATMARRFGGTGLGLAITRRLALLMGGDVAVDSRVGE--- 731

Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450
              +  + +              P    E E        R +  E
Sbjct: 732 --GSRFSFSVRLRAGETVVATACPAVDGEAELRQRHAGARVLLAE 774


>gi|218778386|ref|YP_002429704.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218759770|gb|ACL02236.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 779

 Score =  303 bits (776), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 77/531 (14%), Positives = 180/531 (33%), Gaps = 43/531 (8%)

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAG 364
                      E E       +  P+  F     G +   N +   +  +++V+D     
Sbjct: 138 TERKKTEQVLLESEEKYRSLFENAPVGIFRTDSKGGVALCNTAMARILGFEAVED--ALA 195

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
             S L +    +     + +   + +                  ++  +       A++ 
Sbjct: 196 YYSNLGEQLYANPERRREFIRQLKENGFVKNFEYEAK---LPGGDNKWLNMDARIMASKK 252

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
                  G   +  + +   + ++    +   + E   + +   +    +   NR   K+
Sbjct: 253 DGAFLIEGFATDITERKQADQALQKSEARFRELSEMLPETVFETDANIRLTFVNRQAYKM 312

Query: 485 FGYPVEDI-LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           FGY  ED          +           ++   +               K+     +  
Sbjct: 313 FGYTEEDFKNGLNGLEMMIPEDRPKAIENISAKFTGKSIGV--NEYTAIHKDGSTFPVLF 370

Query: 544 IIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
               +  +         + D++E ++ + +L   +KI              ++H+    L
Sbjct: 371 HTSPIFANGQPAGLRGVIVDMTERRRIERRLQKTQKI-----ESIGTLAGGIAHDFNNLL 425

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
             I+G SE++      P  +  + +    I ++     ++V  +L  S+    K     +
Sbjct: 426 FPILGMSELLLEDL--PKDSSEW-QCVREIFKASKRGSELVKQILAFSR----KAEPKKQ 478

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720
           P  L + + EA+ L +       + I +    +   ++AD   + Q+ +N+++NA H   
Sbjct: 479 PSVLQQVLKEAVKLSRSTIPA-DVAITSDIMPDCGVVMADPTQMHQVVMNLITNAYHAVQ 537

Query: 721 -SGGQIIISTT-------------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
             GG I +S                      ++ + D GVG+    +++  +P+    ++
Sbjct: 538 NQGGAIFVSLRECQLEKEDLTDKNLPPGRFALMSIADNGVGVDPEIMDRIFEPYFTTKST 597

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
               G+GTGLGL +   ++  + G+  I S P +GT++++  PL   S   
Sbjct: 598 ----GKGTGLGLAVVHGIIKDHRGEIKIRSNPGRGTVVDVFLPLMKKSKEQ 644



 Score =  107 bits (268), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 89/302 (29%), Gaps = 20/302 (6%)

Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFL 349
                 +   + L   +         E E          P+ F  ++  G +   N  F+
Sbjct: 5   PTYEELEARIKELERSSDD----SCKENEEKYRLIFQNAPLGFLHFNQDGVITACNDMFV 60

Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
            +        I    GL+ L    +   +   + +   +             ++    E 
Sbjct: 61  KIIGSSKKALI----GLNMLHLRDEKFVHAVREALNNRQG-----YYEGDYRSVT--AEK 109

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469
              +         +  +     GI  +  + +  ++ +     +  S+ E    GI   +
Sbjct: 110 VTPIRVHFSPYRFRDNDVCGGVGIVEDFTERKKTEQVLLESEEKYRSLFENAPVGIFRTD 169

Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPFTVFLE--QNTPSVMNHYLTEILSLDLRQTLEK 527
            +G +   N A++++ G+   +     ++   E     P     ++ ++      +  E 
Sbjct: 170 SKGGVALCNTAMARILGFEAVEDALAYYSNLGEQLYANPERRREFIRQLKENGFVKNFEY 229

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYS--LTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
                  + K L++   I        +       DI+E KQ    L  ++    + S   
Sbjct: 230 EAKLPGGDNKWLNMDARIMASKKDGAFLIEGFATDITERKQADQALQKSEARFRELSEML 289

Query: 586 SD 587
            +
Sbjct: 290 PE 291



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 50/400 (12%), Positives = 109/400 (27%), Gaps = 26/400 (6%)

Query: 60  ESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLC 119
           E  S+ +  ++E  +        + F  + +  G +   ++   K IG+    +IG+ + 
Sbjct: 18  ERSSDDSCKENEEKYRLIFQNAPLGFL-HFNQDGVITACNDMFVKIIGSSKKALIGLNM- 75

Query: 120 DVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFR 179
               +      + + + L  +  +Y               PI +   P   R+ +  G  
Sbjct: 76  --LHLRDEKFVHAVREALNNRQGYYEGDYRSVTAE--KVTPIRVHFSPYRFRDNDVCG-- 129

Query: 180 GFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK 239
           G GIV           +    ++K+  L E           K  +    +    +     
Sbjct: 130 GVGIVEDFTERKKTEQVLLESEEKYRSLFENAPVGIFRTDSKGGVALCNTAMARILGFEA 189

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLP------EQEDFHTINLNQYTKKQYFGTLQ 293
           V     YY++  + L                       + +      +          + 
Sbjct: 190 VEDALAYYSNLGEQLYANPERRREFIRQLKENGFVKNFEYEAKLPGGDNKWLNMDARIMA 249

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEG----ENLTPETVDKCPIPFFVYSHG-NLFYANPSF 348
           +    +F         +     D+     E    E  +  P   F       L + N   
Sbjct: 250 SKKDGAFLIEGFATDITERKQADQALQKSEARFRELSEMLPETVFETDANIRLTFVNRQA 309

Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
             +  Y   D      GL  ++   +      I      +S             I  +  
Sbjct: 310 YKMFGYTEEDFKNGLNGLEMMIPEDRPKAIENISAKFTGKSIGV-----NEYTAIHKDGS 364

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
               +       AN  P  +   G+  +  + R  +R+++
Sbjct: 365 TFPVLFHTSPIFANGQPAGLR--GVIVDMTERRRIERRLQ 402



 Score = 48.9 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 35/343 (10%), Positives = 89/343 (25%), Gaps = 21/343 (6%)

Query: 59  QESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRL 118
           +   +    L+SE  +        V   +  D+ G +   +  + + +G  A +      
Sbjct: 139 ERKKTEQVLLESEEKYRSLFENAPVG-IFRTDSKGGVALCNTAMARILGFEAVEDALAYY 197

Query: 119 CDVSDILHIDPNNH---IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREF 175
            ++ + L+ +P      I  L +       +       G N ++ +D   +    ++  F
Sbjct: 198 SNLGEQLYANPERRREFIRQLKENGFVKNFEYEAKLPGGDNKWLNMDARIMASK-KDGAF 256

Query: 176 SGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS------ 229
               GF                ++ + +F  L E+             +           
Sbjct: 257 L-IEGFAT--DITERKQADQALQKSEARFRELSEMLPETVFETDANIRLTFVNRQAYKMF 313

Query: 230 PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYF 289
                  KN ++ L                   T +   + E    H  + + +    + 
Sbjct: 314 GYTEEDFKNGLNGLEMMIPEDRPKAIENISAKFTGKSIGVNEYTAIHK-DGSTFPVLFHT 372

Query: 290 GTL---QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANP 346
             +      +      +       +     + + +  E++         +   NL +   
Sbjct: 373 SPIFANGQPAGLRGVIVDMTERRRIERRLQKTQKI--ESIGTLAGGIA-HDFNNLLFPIL 429

Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389
               L       D      +  +  A K       + +   R 
Sbjct: 430 GMSELLLEDLPKDSSEWQCVREIFKASKRGSELVKQILAFSRK 472


>gi|228951953|ref|ZP_04114051.1| hypothetical protein bthur0006_13670 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|229069129|ref|ZP_04202421.1| hypothetical protein bcere0025_13360 [Bacillus cereus F65185]
 gi|229078759|ref|ZP_04211313.1| hypothetical protein bcere0023_14220 [Bacillus cereus Rock4-2]
 gi|228704632|gb|EEL57064.1| hypothetical protein bcere0023_14220 [Bacillus cereus Rock4-2]
 gi|228714074|gb|EEL65957.1| hypothetical protein bcere0025_13360 [Bacillus cereus F65185]
 gi|228807876|gb|EEM54397.1| hypothetical protein bthur0006_13670 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 591

 Score =  303 bits (776), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 82/371 (22%), Positives = 154/371 (41%), Gaps = 39/371 (10%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            ++ E  QL SIL + +DG+  +N+EG ++  N           E+       + L +  
Sbjct: 249 ALQQEKEQLASILSSMADGVITLNQEGEVVVINPPAEHFLQVWQEEK-----EIELSKKL 303

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
           PS +      ++  + +Q +E        +   + L   +            + D++E +
Sbjct: 304 PSELVELFHLVVESEQQQVVEINLQ----KGNYVVLMTPLYNQTKIRGAVAVLRDMTEER 359

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + +                + DF+A VSHE+RTP+  + G+SE I +            E
Sbjct: 360 RLE--------------KMRQDFIANVSHELRTPMVMLQGYSEAILDDIVQT--KEEIDE 403

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           +   I      +  +VN+LLD++++ESG + LH   V +   V +     Q  A +K + 
Sbjct: 404 FVQIIYDESVRLGKLVNELLDLARMESGHVELHIGEVDIHPFVEKIGRKFQGIAKDKEVE 463

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +   F N I     D   ++Q+  N++ NAI  T +GG + +     +N  +I  V+D+G
Sbjct: 464 LTVDFRNQIEEYAFDADRMEQVLTNLIDNAIRHTNAGGHVTLVIDTKNNG-LIFEVQDSG 522

Query: 746 VGMTNYELEKAMKPFGQIPNSQQI-------RGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           VG+   ++      F +   ++          G        +AK +V  + GK  + S  
Sbjct: 523 VGIPEEDIPFLFDRFYKADKARTRGKKGGTGLGL------AIAKNIVQGHDGKISVSSVV 576

Query: 799 AKGTLIEIIFP 809
            +GT   +  P
Sbjct: 577 GEGTTFSVYLP 587


>gi|134293593|ref|YP_001117329.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia vietnamiensis
           G4]
 gi|134136750|gb|ABO57864.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia vietnamiensis
           G4]
          Length = 664

 Score =  303 bits (776), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 99/442 (22%), Positives = 175/442 (39%), Gaps = 21/442 (4%)

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
             +    +  + + A A         E +L +   P    ++       +          
Sbjct: 72  GALWWRPAAPSELLAQAVAFVAISFVECALVVAVKPLFANDRLRGADSDDEAPS-PTRRE 130

Query: 442 INKRKMEIE----VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
                +E      +  L S+++A+ D I  ++    I+S NRA  ++FG      + +  
Sbjct: 131 PAAASLEHAPSDDLALLHSVVDASPDAIVGVDAGRRIVSWNRAARRIFGVDATAAIGRDV 190

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---- 553
           T  +           L                L    +            +  +      
Sbjct: 191 TTLIAPRWLR--LQPLPASFEHPRAAVGPFDVLCVRGDGGRFRASFAAAPIVDAGGNCTG 248

Query: 554 YSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
            S+T+ +  + ++++      L  A+  A++ +  K + L+ VSHE+RTPL  I G+ EV
Sbjct: 249 LSITLREADQRRRDERGHLRALRGARVQADQSNRLKDELLSTVSHELRTPLNVIYGWVEV 308

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           +++      G     +  + IDRS   +  +V DLLD S + +G+  L   PV L   V 
Sbjct: 309 LRS----VDGQAFAQQAIDAIDRSARSLSRMVGDLLDASSLATGRTRLERAPVDLVRIVR 364

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
           +A+  +   A+   I + T  A     I AD   ++Q+  N+LSNAI FTPSGG+I +S 
Sbjct: 365 DAVRELGGSADANGIALSTDCALTNCVISADGERLRQVLSNLLSNAIKFTPSGGRITVSL 424

Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
              +   V + V DTG G++   L      F +   +      G GLGL + + +V  + 
Sbjct: 425 A-RAGARVRMAVTDTGHGISAERLPHLFDTFNRPEGAAASPKRGLGLGLSIVRNIVRLHG 483

Query: 790 GKFYIFS-TPAKGTLIEIIFPL 810
           G     S     GT + +  P+
Sbjct: 484 GDVAASSPGAGLGTTVTVTLPV 505



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 53/544 (9%), Positives = 117/544 (21%), Gaps = 60/544 (11%)

Query: 55  TDQNQESVSNTNYLDSENTFVFDP-----------IPRTVRFTWNIDAHGYLKEISEELP 103
            D + E+ S T    +  +    P                     +DA   +   +    
Sbjct: 117 ADSDDEAPSPTRREPAAASLEHAPSDDLALLHSVVDASPDAIV-GVDAGRRIVSWNRAAR 175

Query: 104 KTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDL 163
           +  G  A   IG  +  +     +            +    G   +  + G         
Sbjct: 176 RIFGVDATAAIGRDVTTLIAPRWLRLQPLPASFEHPRAAV-GPFDVLCVRGDGGRFRASF 234

Query: 164 AALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYD 223
           AA PI       +G      +              R  +      +        E     
Sbjct: 235 AAAPIVDAGGNCTGLS--ITLREADQRRRDERGHLRALRGARVQADQSNRLKD-ELLSTV 291

Query: 224 IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY 283
               ++P   +    +V    +  A     +        +         +          
Sbjct: 292 SHELRTPLNVIYGWVEVLRSVDGQAFAQQAIDAIDRSARSLSRMVGDLLDASSLATGRTR 351

Query: 284 TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD----------EGENLTPETVDKCPIPF 333
            ++     ++       E     +   ++   D          +GE L     +      
Sbjct: 352 LERAPVDLVRIVRDAVRELGGSADANGIALSTDCALTNCVISADGERLRQVLSNLLSNAI 411

Query: 334 -FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGG--LSTLLDAPKLSDNNAIKPVMLYRSD 390
            F  S G +  +        +    D         L  L D     +  A  P       
Sbjct: 412 KFTPSGGRITVSLARAGARVRMAVTDTGHGISAERLPHLFDTFNRPEGAAASPKRGLGLG 471

Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450
            + +    RLH       +  A              +      +P    T +    ++  
Sbjct: 472 LSIVRNIVRLHGGDVAASSPGAGLGTTVTVTLPVDWDADDPAADPARPATALKAVALDGY 531

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
                         + +++ +    ++  A  + FG  V                     
Sbjct: 532 R-------------VLVVDDDATSRASLAAALETFGAQVALAH--------------SGR 564

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570
             L  +        L      +  +     L   I+ LP        +  ++     + +
Sbjct: 565 DALNALSRQRPGVVLSD---LAMPDGDGFWLLDHIRHLPGDDARMPVVA-VTAHTGAEER 620

Query: 571 LSHA 574
               
Sbjct: 621 KRVM 624



 Score = 48.1 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/252 (8%), Positives = 54/252 (21%), Gaps = 7/252 (2%)

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
            L      +  + +  + +        +         +     SL    A         +
Sbjct: 24  ALQAWAIRVVGVHEPFAPLPFYAGVAAAAWLTSLAGGLAATAVSLAVIGALWWRPAAPSE 83

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
                    ++   E    + +             ++ +            SL     + 
Sbjct: 84  LLAQAVAFVAISFVECALVVAVKPLFANDRLRGADSDDEAPSPTRREPAAASLEHAPSDD 143

Query: 319 ENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
             L    VD  P        G  +   N +   +    +   I     ++TL+    L  
Sbjct: 144 LALLHSVVDASPDAIVGVDAGRRIVSWNRAARRIFGVDATAAIGR--DVTTLIAPRWL-- 199

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
              ++P+               +  ++ +     A                    +   D
Sbjct: 200 --RLQPLPASFEHPRAAVGPFDVLCVRGDGGRFRASFAAAPIVDAGGNCTGLSITLREAD 257

Query: 438 VDTRINKRKMEI 449
              R  +  +  
Sbjct: 258 QRRRDERGHLRA 269


>gi|217965615|ref|YP_002351293.1| sensor protein YycG [Listeria monocytogenes HCC23]
 gi|217334885|gb|ACK40679.1| sensor protein YycG [Listeria monocytogenes HCC23]
 gi|307569836|emb|CAR83015.1| sensory box histidine kinase [Listeria monocytogenes L99]
          Length = 610

 Score =  303 bits (776), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 80/398 (20%), Positives = 167/398 (41%), Gaps = 29/398 (7%)

Query: 424 FPENMPQNGIEPEDVDTRINKRKM--EIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
             + + +       +  R+ + +   E E  +L S+L   +DG+   +R G ++  N   
Sbjct: 236 GVDEIGELADSFNTLTKRVQEAQAMTEGERRKLSSVLAYMTDGVIATDRRGKVILINTPA 295

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT-EILSLDLRQTLEKITLGSTKEEKLLS 540
            K+     E    +     L+          +  +      R T +K  +          
Sbjct: 296 EKMLRVKHESANGRSIIDVLDIGDTYQFEDLMEVDGSLTMDRSTFDKPYVLRAN------ 349

Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
             +I ++  F++     +HDI++ ++   +              + DF++ VSHE+RTPL
Sbjct: 350 FSVIQRETGFNNGVIAVLHDITDQEKVDQE--------------RRDFVSNVSHELRTPL 395

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
           T++  + E + +  +          +          ++ +VNDLL +S+++ G+  L   
Sbjct: 396 TSMHSYLEALSDGAW--EDKEIAPRFLEVTQNETERMIRLVNDLLKLSRMDGGREQLEKS 453

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720
            V+  +  +  I   +    ++ I+ +         I  D   V Q+  NI+SNA  ++P
Sbjct: 454 FVNFTDFFNHIIDRFE-MMKKETIMFKRHIPREPVIIEIDEDKVMQVLDNIISNANKYSP 512

Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
            GG+I        + E+ + + D G+G+ + +L      F ++  ++     GTGLGL +
Sbjct: 513 DGGRISFYLKKFED-EIEVSIADEGLGVPDEDLANVFDRFFRVDKARSREMGGTGLGLAI 571

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
           A+ +++A+ G+ +      KGT+I+   P   +  P D
Sbjct: 572 AREVIEAHGGRIWAERNKTKGTIIKFTLP--YSDLPED 607


>gi|187777059|ref|ZP_02993532.1| hypothetical protein CLOSPO_00604 [Clostridium sporogenes ATCC
           15579]
 gi|187773987|gb|EDU37789.1| hypothetical protein CLOSPO_00604 [Clostridium sporogenes ATCC
           15579]
          Length = 617

 Score =  303 bits (776), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 86/362 (23%), Positives = 161/362 (44%), Gaps = 10/362 (2%)

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLF-GYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           ++E   D I I  ++  I+  N + S+L       ++       F+ +     + + L  
Sbjct: 222 LIENARDAIIIHRKD-KIVFANESASELLICSNNNELQDININNFILKEEQKKIRNKLEL 280

Query: 516 ILSLDLRQT-LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA 574
           +         +E++   + KE   +                  + DI+  KQ +      
Sbjct: 281 VYRNKSDIICVEQVIQNNKKENINVESISTYIIYNNKPAILSILRDITSQKQVEKLQKDV 340

Query: 575 KKIAEKESSHK------SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
           +K  E  +  +      +DFLA +SHE++TPL  I    +++   +       +  +Y  
Sbjct: 341 EKNIELLNESREYNKLITDFLANISHELKTPLNVIFTAVQILDLYKKDANSYDKKEQYIK 400

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I ++   ++ ++N+LLD +K++SG + L+    ++   V E    V  YA  K I I  
Sbjct: 401 VIKQNCYRLMRLINNLLDTTKLDSGYLKLNLVNCNIVNLVEEITLSVVYYAESKNINIIF 460

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748
                   +  D   +++I LN+LSNAI FT SGG I ++      + + + V+DTG+G+
Sbjct: 461 DTDVEEKIMAVDPDKIERIILNLLSNAIKFTGSGGNIYVNIK-DCKDSITISVKDTGIGI 519

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
              ++E   + F Q+  + +   EG+G+GL L K+ V+ + G   I S   KG+   I  
Sbjct: 520 PQDKIENIFERFVQVDKTLRRNKEGSGIGLYLVKSFVNMHEGNIDIQSVIGKGSEFIINI 579

Query: 809 PL 810
           P+
Sbjct: 580 PV 581


>gi|254195423|ref|ZP_04901851.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei S13]
 gi|169652170|gb|EDS84863.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei S13]
          Length = 1014

 Score =  303 bits (776), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 126/677 (18%), Positives = 232/677 (34%), Gaps = 59/677 (8%)

Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH 233
           +F   +G+ ++H  +      A+G     +          + ++ + +  +   QSP P 
Sbjct: 111 QFDAHQGYAVLHTPQGAPAALAVGIPAPGRS---ASAFAPYLALLETQLLMGDGQSPLPD 167

Query: 234 LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293
            R++    S    Y       + +         S+                 +     + 
Sbjct: 168 DRVEGYSFSPDGTYLSLLWSREDQAPEAFIESHSASGL---IGDAMRGIRYLRDASTIVP 224

Query: 294 NNSKESFEYLSHRNHP--------SLSAYFDEGENLTPETVDKCPIPFF----------- 334
             +     +L     P         +    D    L    V   P+  F           
Sbjct: 225 LRADRRTVWLPPHPDPLTGKPMIRIVQPAIDATGKLFAIYVRSLPLDMFYRNLNDAPAGS 284

Query: 335 ----VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390
               V   GN+   + +        +   + I       L           +  M   SD
Sbjct: 285 TLTIVDRKGNVILGSSNQHGGDGGATASALGI-----RSLGDGFGGLVERYQDGMFVTSD 339

Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR------INK 444
           +        +H   W    + A+              +    +     D +         
Sbjct: 340 QLPGTDWVLVHAYSWK-TIAAALALRFSLVTGLVAGIIVMLWLFAIQFDRKGLIPNYRRA 398

Query: 445 RKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
           +++    +   +IL     G+ +++  +G +L  N A+ +L     ++ L          
Sbjct: 399 QRLLESEVLNRTILRTAPVGLGLLSAQDGSVLLQNNAMLELSARTSDEPLPIRLWEAYRH 458

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                 +               +            L   ++  +   ++    T+ DIS 
Sbjct: 459 AVGRSSDE-------DGALLQHDLAIEREGANPVYLQANVVAARYRGANVLLCTLLDISL 511

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            K+ + KL  A+  A++ +  KS FLA +SHEIRTPL AIIG  E+++        + + 
Sbjct: 512 RKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPL----SEQQ 567

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            E  + ++   N +L I+ND+LD+SK+ESG+M L   P  +   + E +      A  K 
Sbjct: 568 SERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAYAPLAESKG 627

Query: 684 ILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIST----THTSNEEVI 738
           + + +S    + R    D   ++Q+  N++ NAI FT  G  I I             + 
Sbjct: 628 LALLSSIGEGVARHYTGDPTRIRQVLSNLIGNAIKFTERG-HISIDVHRAKAARDGSAIE 686

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           + V DTG+G+    +      + Q   S   R  G+GLGLPL + +V    G   I S P
Sbjct: 687 IWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLP 746

Query: 799 AKGTLIEIIFPLYDTSH 815
             GT + +  PL +  H
Sbjct: 747 DFGTTVTVALPLREARH 763


>gi|332203074|gb|EGJ17142.1| sensory box protein [Streptococcus pneumoniae GA47901]
          Length = 449

 Score =  303 bits (776), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 86/376 (22%), Positives = 165/376 (43%), Gaps = 33/376 (8%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           R+ +  +E E  +L SIL   +DG+   NR G I+  N    K  G   ED+L +     
Sbjct: 83  RLTQENLEQESKRLNSILFYMTDGVLATNRRGQIIMINDTAKKQLGLVKEDVLNRSILEL 142

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SL 556
           L+      +   +         Q+ E +        + L+LR+    +   S +      
Sbjct: 143 LKIEENYELRDLI--------TQSPELLLDSQDINGEYLNLRVRFALIRRESGFISGLVA 194

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            +HD +E ++E+ +                 F++ VSHE+RTPLT++  + E +      
Sbjct: 195 VLHDTTEQEKEERERRL--------------FVSNVSHELRTPLTSVKSYLEALDEGALC 240

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV- 675
               P   ++        N ++ +V DLL +S+I++   +L  E ++    ++  ++   
Sbjct: 241 ETVAP---DFIKVSLDETNRMMRMVTDLLHLSRIDNATSHLDVELINFTAFITFILNRFD 297

Query: 676 --QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
             +    EK+  +   +  N   +  D   + Q+  NIL+NAI ++  GG+I +    T 
Sbjct: 298 KMKGQEKEKKYELVRDYPINSIWMEIDTDKMTQVVDNILNNAIKYSSDGGKITVRMKTTE 357

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
           ++ + L + D G+G+   +L +    F ++  ++     GTGLGL +AK ++  + G  +
Sbjct: 358 DQMI-LSISDHGLGIPKQDLPRIFDRFYRVDRARSRAQGGTGLGLSIAKEIIKQHKGFIW 416

Query: 794 IFSTPAKGTLIEIIFP 809
             S   KG+   I+ P
Sbjct: 417 AKSEYGKGSTFTIVLP 432


>gi|327394559|dbj|BAK11981.1| sensor kinase protein RcsC [Pantoea ananatis AJ13355]
          Length = 880

 Score =  303 bits (776), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 93/391 (23%), Positives = 167/391 (42%), Gaps = 29/391 (7%)

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFG 486
           +         +    N  ++E        I+ +   GI I+   +G  + +N        
Sbjct: 264 LAWLFERRMFLPAEENAHRLEEHEQFNRKIVASAPVGICILRTSDGTNILSNELA----- 318

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
                     +   L Q     +N  +        +          T     L +  +  
Sbjct: 319 --------HNYLTLLTQEDRKRLNEII-----GGQQVNF---VDVLTGSNTNLQISFVHS 362

Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
           +    +     + D+S   + +  L      AE+ S  KS FLA VSHE+RTPL  IIG 
Sbjct: 363 RYRNENVAICVLVDVSARVRMEQSLQEMAHAAEQASQSKSMFLATVSHELRTPLYGIIGN 422

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
            ++++ ++     +         ++ S +L+L I++D+LD SKIES ++ +   P S  E
Sbjct: 423 LDLLQTRQLPSGIDS----LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPRPFSPRE 478

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQI 725
            ++  +        +KR+ +     +++P+ L  D   ++Q+  N+L+NAI FT +G   
Sbjct: 479 VITHIVGNYLSLVVKKRLTLYCYIEHDVPQALDGDPLRLQQVISNLLNNAIKFTHTGC-- 536

Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
           II   + +   +  R RDTGVG+   EL +   PF Q+ N  Q   +GTGLGL + + ++
Sbjct: 537 IILHAYVTQGYLAFRTRDTGVGIPAKELTRLFDPFFQVGNGVQRNFQGTGLGLAICEKLI 596

Query: 786 DANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           +   G   + S P  G+   +  P+Y+   P
Sbjct: 597 NMMDGDIEVESEPGMGSQFIVRIPIYNGKQP 627


>gi|303326355|ref|ZP_07356798.1| sensory box sensor histidine kinase/response regulator
           [Desulfovibrio sp. 3_1_syn3]
 gi|302864271|gb|EFL87202.1| sensory box sensor histidine kinase/response regulator
           [Desulfovibrio sp. 3_1_syn3]
          Length = 667

 Score =  303 bits (776), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 113/528 (21%), Positives = 191/528 (36%), Gaps = 26/528 (4%)

Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYSHGNL-----FYANPSFLLLTKYKSVDDIEIAGG 365
                 + ++   E +D      +V             A+   L L   +     E    
Sbjct: 6   AWRNLLKEQSWMQEAMDAANTGLWVIMIDTRNGCCSMLASAPMLRLLGLEEHPAPEECFA 65

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
                   K  D+            +         +     +   + +       +    
Sbjct: 66  FWRGRVDKKCDDDVNDVVDRFLADTQ----MHEVRYPYHHPKWGVIFVRCGGRRISAADD 121

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR-EGIILST-NRAVSK 483
             +   G   +  + +   + +   + +L         G+  +   EG +  T N     
Sbjct: 122 PLVRITGYHQDVSEIQAMHQSLRESLARLSLACRLGRLGVFELRHGEGELELTGNDIFFG 181

Query: 484 LFGYPV---EDILRKPFTVFLEQNTPSVMNHYLTEILSL-DLRQTLEKITLGSTKEEKLL 539
             G P    ++         L                 +    +  E   L     ++ L
Sbjct: 182 QLGLPEGLGDEERVDAVEARLVPEDREAWRALRHPADWVVGRHEHTEVRVLHPRLGQRWL 241

Query: 540 SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
            L   +     +   +    D++E +  +  L  AK  AE  ++ KS FLA +SHEIRTP
Sbjct: 242 KLAYEVMGSGENRRIAGYTDDVTERRLHERMLREAKNEAEAANAAKSIFLANMSHEIRTP 301

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           +  I+G + +  N    P    +  +Y   I  +   +LDI+NDLLD SKIE+  M L  
Sbjct: 302 MNGIMGMAYLALNTDLTP----QQRDYIEKIHGTCVSLLDIINDLLDFSKIEANHMELEN 357

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHF 718
            P      +   ++L+Q  A  K++ + T    NIP +L  D   ++QI LN+ SNA+ F
Sbjct: 358 LPFQPAHEIEAVLTLLQPKAQAKKLGLETVIDPNIPTVLSGDALRLRQILLNLGSNAVKF 417

Query: 719 TPSGG-QIIISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           +  G  +I +   H + + V LR  V D G+GM+  E  +  KPF Q   S   R  GTG
Sbjct: 418 SEHGTVRIDLELAHRTTDMVCLRCSVSDEGIGMSPEEQARIFKPFSQADTSITRRFGGTG 477

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP---LYDTSHPHDCI 820
           LGL L + +     G   + S   KG++  +  P         P D +
Sbjct: 478 LGLALCRRLTALMGGGISVESEEGKGSVFRVELPFRLAAGADLPADAV 525


>gi|160940248|ref|ZP_02087593.1| hypothetical protein CLOBOL_05137 [Clostridium bolteae ATCC
           BAA-613]
 gi|158436828|gb|EDP14595.1| hypothetical protein CLOBOL_05137 [Clostridium bolteae ATCC
           BAA-613]
          Length = 1118

 Score =  303 bits (776), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 128/780 (16%), Positives = 254/780 (32%), Gaps = 91/780 (11%)

Query: 95  LKEISEELPKTIGNYAFKMI----GMRLCDVSDILHIDPNNHIGDLLKRQN-TWYGKTTL 149
              +S+E     G    + +    G  + +V             +  +  N T+  +  +
Sbjct: 201 FAFVSKEAAALFGYTVEEFMEVTGGTAVGNVYPPDLPGALADCAEAFRDGNLTYSTRYRV 260

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
              +G+     I  +       +     +    +        +     +   +  + +++
Sbjct: 261 RCKDGSLK--WIIDSGKKAQDADGN---WMVNSLYLDVTRSEEDAQRLREQTQLLTSIYD 315

Query: 210 IKK----GHSSVEKEKYDIFSQQSPPPHLR-MKNKVSSLTE-------YYAHKDDVLKTE 257
                        +  Y + S      +L   K+    L +           +D ++  E
Sbjct: 316 TVPCGIIRFVRDIEGGYRLVSINRAVLNLMGYKDMEEGLNDWHDGVLGAVLEEDRLILQE 375

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKK----QYFGTLQNNSKESFEYLSHRNHPSLSA 313
            Y  L        ++      + + +  +        T Q         +       L  
Sbjct: 376 AYRKLREIGDRQDQEYRVRWKDGSIHWLEGTSMVVGVTPQGEDILQRTAVDITQRKILQE 435

Query: 314 YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
             +  + +   +++      F Y      +   S+   T    +   E+     TLL   
Sbjct: 436 QLEREQEMYRVSMEVSSAVMFEYRMDEDVFI--SYEPKTGQGVL-RNELRDYSRTLLKRQ 492

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP-FEKANQFPENMPQNG 432
            +  ++    +     +        R+       E    +          +  +     G
Sbjct: 493 VVHPDDVPTVIDN-ICNGRSEVFEVRVSV--PGGEPGTYIWHRVNSRLMMENGKPSRVVG 549

Query: 433 IEPEDVDTRINKRKMEIEVMQL---CSILEATSDGIAIINREGIILSTN-----RAVSKL 484
                      K K+     +L    S L+A + G+ +      I   N         +L
Sbjct: 550 ALHNI---HSMKSKLSENSERLYMSQSALQAIN-GVYM-----SIFYVNLPEDSYYAVRL 600

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK------- 537
                  +L +           S +   + +     +    E+  L              
Sbjct: 601 PEVRGGAVLPRN--GCYSTELCSYILSDVDQADRKRVMSICEREWLLGELAGGNEHIEVE 658

Query: 538 --------LLSLRIIIKKLPFSSCYSLTM--HDISEWKQEKNKLSHAKKIA--------- 578
                    L L + +         +  +   +IS  KQ + +    +K A         
Sbjct: 659 FRHGFSPLWLRLEVHMVASKEGRPRTAIIALRNISAEKQRELEYYDEEKKAKHALEEAYD 718

Query: 579 --EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
              + +  KSDFL+R+SH+IRTP+ AI+G + + ++         +  +  + I  SG+ 
Sbjct: 719 SLNRANQAKSDFLSRMSHDIRTPMNAIMGMTAIAQSNLN---NRDKIEDCLSKISLSGSH 775

Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN-NIP 695
           +LD++N +LD+SKIESG + L  +   L+E V E   +V+   + K   +  S    +  
Sbjct: 776 LLDLINKVLDMSKIESGNVGLSEDAFCLEELVEEVSLIVKPDMDSKGQELSISLKEIDHH 835

Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN-----EEVILRVRDTGVGMTN 750
            +  D   VKQI +N+LSNA+ +T   G I +S     +           V D G+GM  
Sbjct: 836 AVYGDAVRVKQILINLLSNAVKYTSDRGHIAVSLEEKLSSESGVGCFEFVVEDDGIGMAP 895

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI--EIIF 808
             LEK   PF +  +S+  + +GTGLGL + + +V    G   + S   +GT     I  
Sbjct: 896 EFLEKLFMPFERAEDSRVSQVQGTGLGLAITRNLVQMMNGTIRVESQLNRGTRFIATIYL 955


>gi|134292637|ref|YP_001116373.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           vietnamiensis G4]
 gi|134135794|gb|ABO56908.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           vietnamiensis G4]
          Length = 1021

 Score =  303 bits (776), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 125/650 (19%), Positives = 215/650 (33%), Gaps = 52/650 (8%)

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247
               D  A    L     HL      + +   E Y            R            
Sbjct: 117 TAQRDEVARYLALSFMLPHLCATSADNRACTVEGYHY--------STRTGVFGIVPRPAR 168

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLN-QYTKKQYFGTLQNNSKESFEYLSHR 306
            H        +  LL +            +           Y   +   S+      +  
Sbjct: 169 DHPALATARTRAQLLAALHVDFDGPMPAQSDGRPSVRWLPPYVDPVTGRSRIRIAAQARA 228

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
              + +    E        +   P           F+   +   L        +E  G L
Sbjct: 229 GGGAFAVLVTEYAPEY--LLSWLPDRGLAGR----FFVASADNRLIAIDP--AVEHTGAL 280

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW-------NRENSLAMTFIPFE 419
           +  L A  ++  +      L+RS    I   +RL T  W         +  L +      
Sbjct: 281 NARLLALDVARGDESLGEPLFRS--GSIVFRSRLATTGWTVAYVLSWGDVVLGVGVQAAV 338

Query: 420 KANQFPENMPQNGIEPEDVDTRI-----NKRKMEIEVMQL-CSILEATSDGIAIIN-REG 472
            A      +    +       R+      +     +   L  S++     GI +++  + 
Sbjct: 339 LAAATLVTIAVMWLLLVRFHRRVLAPVYARSARVFDSEALCRSVIAMAPVGIGLVSLSDR 398

Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
            ++  + A+ ++           P        +  V+  Y   +      +TL       
Sbjct: 399 RVMLASDALVQML---------LPHGGDHHALSARVLERYDAFVADGGRGRTLVTELAVD 449

Query: 533 TKEEKLLSLRI--IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
              +  L L I     +            D +  ++   +L  A + A+  ++ KS FLA
Sbjct: 450 AHGDAPLHLEIIAHAARYQGEDVLIAVFTDTTAQRRLVQQLEEAVRAADSANAAKSSFLA 509

Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650
             SHEIRTPL  I+G  E+++          R       +  S   +L IV+D+LD SKI
Sbjct: 510 ATSHEIRTPLNVILGNLELLERTALDASQQSRVR----TLRASAEGLLAIVSDILDFSKI 565

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIAL 709
           E+G M++      L   + + ++     A  K + +      ++ + +  D   + Q+  
Sbjct: 566 EAGAMSVESIEFELIAVIEQQLAAFAPIAKAKGLPLFVEIDASVEQRMRGDPTRLAQVLG 625

Query: 710 NILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
           N+LSNAI FT  G    ++ +        EV L V DTG+G+   +  +  KPF Q+  S
Sbjct: 626 NLLSNAIKFTSEGHIAARVAVWPDARGVPEVELSVEDTGIGIEPTQRARLFKPFSQVDAS 685

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
              R  GTGLGL L   +V A  G   + STP  G++  +  PL     P
Sbjct: 686 ITRRYGGTGLGLALCDRLVTAMGGTLSVESTPQVGSVFSVHLPLQADIAP 735


>gi|315301282|ref|ZP_07872500.1| sensor protein kinase WalK [Listeria ivanovii FSL F6-596]
 gi|313630342|gb|EFR98257.1| sensor protein kinase WalK [Listeria ivanovii FSL F6-596]
          Length = 610

 Score =  303 bits (776), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 82/397 (20%), Positives = 166/397 (41%), Gaps = 27/397 (6%)

Query: 424 FPENMPQNGIEPEDVDTRINKRKM--EIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
             + + +       +  R+ + +   E E  +L S+L   +DG+   +R G ++  N   
Sbjct: 236 GVDEIGELADSFNTLTKRVQEAQAMTEGERRKLSSVLAYMTDGVIATDRRGKVILINTPA 295

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
            K+     E    +     L+          +    SL + ++                 
Sbjct: 296 EKMLRAKHESANGRSIIDVLDIGDKFQFEDLMEVDGSLTMDRSTSDKPYILRAN-----F 350

Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
            +I ++  F++     +HDI++ ++   +              + DF++ VSHE+RTPLT
Sbjct: 351 SVIQRETGFNNGVIAVLHDITDQEKVDQE--------------RRDFVSNVSHELRTPLT 396

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           ++  + E + +  +          +          ++ +VNDLL +S+++ G+  L    
Sbjct: 397 SMHSYLEALSDGAW--EDKEIAPRFLEVTQNETERMIRLVNDLLKLSRMDGGRERLEKSF 454

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           V+  +  +  I   ++  NE  I+ +         I  D   V Q+  NI+SNA  ++P 
Sbjct: 455 VNFTDFFNHIIDRFEMMKNE-TIMFKRHIPKEPVIIEIDEDKVMQVLDNIISNANKYSPD 513

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           GG+I        N E+ + + D G+G+   +L      F ++  ++     GTGLGL +A
Sbjct: 514 GGRISFYLKKYEN-EIEVSIADEGLGVPEEDLATIFDRFFRVDKARSREMGGTGLGLAIA 572

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
           + +++A+ G+ +      KGT+I+   P   +  P D
Sbjct: 573 REVIEAHGGRIWAERNKTKGTIIKFTLP--YSDLPED 607


>gi|153812069|ref|ZP_01964737.1| hypothetical protein RUMOBE_02465 [Ruminococcus obeum ATCC 29174]
 gi|149831724|gb|EDM86810.1| hypothetical protein RUMOBE_02465 [Ruminococcus obeum ATCC 29174]
          Length = 986

 Score =  303 bits (776), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 99/388 (25%), Positives = 172/388 (44%), Gaps = 12/388 (3%)

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPV 489
             I+    + R    ++         +     D   +++ +       +    KL G   
Sbjct: 317 LIIQTNRTNLRRKDTEILYRDELFQKLSMNVDDVFLMLDAKTYQADYVSPNAEKLLGITA 376

Query: 490 EDILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
           E I +  +            +  +YL EI   + R+   K     T E++      +  +
Sbjct: 377 EQIRKDIRVLGKLHPAEHEDLEKNYLEEIQVHEQREGDFKYVHLKTGEKRWFHNIAMGSE 436

Query: 548 LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
           +     Y L M D +   +    LS A + AE  +  KS FL+ +SH+IRTP+ AIIGF+
Sbjct: 437 VNGKKKYILVMSDRTSDWKMNQALSEAVRAAETANKAKSTFLSNMSHDIRTPMNAIIGFT 496

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
            +  +         R  +Y   I  S N +L ++ND+LD+S+IESGK++L    VSL E 
Sbjct: 497 TLAVSNID---DKKRVQDYLGKILSSSNHLLSLINDILDMSRIESGKIHLEETEVSLSEV 553

Query: 668 VSEAISLVQLYANEKRILIRTSF-ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726
           + +  +++    + K++ +           +  D   + Q+ LN+LSNA+ FTP+GG + 
Sbjct: 554 LHDLKTIISGQIHAKQLELYMDVMDVTNEDVYCDKTRLNQVLLNLLSNAVKFTPAGGTVS 613

Query: 727 ISTTHTSNEE-----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           +        +       +RV+D G+GM+   ++K   PF +   S   R +GTGLG+ + 
Sbjct: 614 VRIRQCHGTQKGSELYEIRVKDNGIGMSQEFVQKIFSPFERERTSTVSRTQGTGLGMAIT 673

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           K +VD   G   + +   KGT   +  P
Sbjct: 674 KNIVDMMGGTIEVQTEQDKGTEFIVRLP 701


>gi|320102584|ref|YP_004178175.1| PAS/PAC sensor hybrid histidine kinase [Isosphaera pallida ATCC
           43644]
 gi|319749866|gb|ADV61626.1| PAS/PAC sensor hybrid histidine kinase [Isosphaera pallida ATCC
           43644]
          Length = 1293

 Score =  303 bits (776), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 122/742 (16%), Positives = 241/742 (32%), Gaps = 80/742 (10%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D  G    ++    +  G             +     ++  N +G    + ++W G    
Sbjct: 275 DGQGRTVFVNPAAERVFGYTLEDYAQHGGPTLLFCDRVEGVNILGRA-AQGHSWQGAFEA 333

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
               G  L V   L  L       E  G+    I          +   +   +    + E
Sbjct: 334 MTRTGEPLAVTARLDGL--TDDQGEPIGW--ILIATPVEERQRAQQALQCQKRLTQLILE 389

Query: 210 IKKGHSSVEKEKYDIFSQQ---SPPPHLRMKNKVSS--LTEYYAHKDDVLKTEKYPLLTS 264
                  +  ++  I            + + +      L     +    L    +  L  
Sbjct: 390 TVAVGIVLLDDQLRIVQANRTFEAMVGVSLADLEGRNWLDVLKPNPPGDLAHRLHAALEG 449

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
              ++P +  F   +          G L          +      S              
Sbjct: 450 RSLAIPGELSFQRPDGQSLVATLTLGRLVVEEGR-PSLVVTLEDASDRIRDRRNLEAAHR 508

Query: 325 TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
            ++   +    +  G                                     D   ++ +
Sbjct: 509 LLESIQLAQLQFIAGE-----------------------------------EDEPILEEL 533

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
           +    + T          +      +  +  +    A        + G E +   + +  
Sbjct: 534 LSRLVELTDSEFGLLCELVPPLDGPASGIPRLRPLVALDRFTIHARKGGEIDQTTSTLGG 593

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT------ 498
           R +E+E      +L     G+A+ +  G I     A  +  G       R          
Sbjct: 594 RFLELER-LFRDVL-TQRQGVAVHDPLGEI-----AAQR--GSKPPRSQRSEIRSGSLAS 644

Query: 499 -VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT 557
            V L       +  +L   L L                     L  +   L  ++     
Sbjct: 645 RVGLSAPDHPPIIEFLGMPLMLGNDLVGTVGVANRPGGYPPDLLNYLQPLLHTAAGILKA 704

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
           +      +  + +L  AK  AE+ +  KS FLA +SHEIRTP+ A++G +E++ +    P
Sbjct: 705 LRQRQSQQMAEVELRVAKLQAEEANRAKSVFLATMSHEIRTPMNAVVGMTELLLDTPLTP 764

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
                  E+   I  SGN +L ++ND+LD+SKIESG++ L   PV L   +   + LV  
Sbjct: 765 ----EQREFTETIRASGNQLLGLINDILDLSKIESGRVELEEGPVRLRLVIERCLELVAA 820

Query: 678 YANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE- 735
            A+ K + +       +P +   D   ++QI  N+LSNA+ +T +G +++++ +  + + 
Sbjct: 821 RAHAKGLELAARLDGTLPEVIRGDDLRLRQILTNLLSNAVKYTDTG-EVVLTASWHAGDL 879

Query: 736 -----------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
                       + + V D+G+G+ + +  +  + F Q+  +   R  GTGLGL + + +
Sbjct: 880 SAPLDSPKRSPRLEIAVEDSGIGIPDAQKPRLFQAFQQLDAAGHRRTGGTGLGLAITRKL 939

Query: 785 VDANMGKFYIFSTPAKGTLIEI 806
           V+   G  ++ + P  G+    
Sbjct: 940 VEKMGGTIHVENRPGGGSRFVF 961



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 46/378 (12%), Positives = 104/378 (27%), Gaps = 16/378 (4%)

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
            +  H +            SPP      +   ++      +          +    ES  
Sbjct: 16  QRGRHGASNNLTSRRSFDPSPPVRSPRPDPSLAMPMLLRARWLRPAWVVVAIEAVVESLR 75

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP-SLSAYFDEGENLTPETVDK 328
                   +     +   +   L + +      L  R     L A  +         VD+
Sbjct: 76  WGLTSAGWLATGLGSAHAWLSILGHLTAAGAAALLVRGELNRLEALKERQRRGYRVVVDE 135

Query: 329 CPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA-PKLSDNNAIKPVML 386
                 +  +   +   N   + +   +S  D+        +        D +  +   +
Sbjct: 136 MDEAVLILDNQERIIEINRRAIEVFAAQSETDLVGREVADLISPESRDDHDLSQRRAGAV 195

Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFI-PFEKANQFPENMPQNGIEPEDVDTRINKR 445
            R+ R       R +             F          P+      +  +    R  + 
Sbjct: 196 CRASRGASRMLVRSNATYLRGRRLNGEGFSMDLVVLLLDPQAQTTAYVVRDLTTRRKTEL 255

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            +        ++L  TSD + I + +G  +  N A  ++FGY +ED  +      L  + 
Sbjct: 256 DLVRVN---KAVL-GTSDAVLIGDGQGRTVFVNPAAERVFGYTLEDYAQHGGPTLLFCDR 311

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDI 561
              +N           +   E +T       + L++   +  L         + L    +
Sbjct: 312 VEGVNILGRAAQGHSWQGAFEAMTRT----GEPLAVTARLDGLTDDQGEPIGWILIATPV 367

Query: 562 SEWKQEKNKLSHAKKIAE 579
            E ++ +  L   K++ +
Sbjct: 368 EERQRAQQALQCQKRLTQ 385



 Score = 70.8 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 42/388 (10%), Positives = 97/388 (25%), Gaps = 36/388 (9%)

Query: 89  IDAHGYLKEISEELPKTIGNYAF-KMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
           +D    + EI+    +     +   ++G  + D+      D ++                
Sbjct: 143 LDNQERIIEINRRAIEVFAAQSETDLVGREVADLISPESRDDHDLSQR--------RAGA 194

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIV-----------HVNRVDNDPRAL 196
                 G +  + +   A  +  R     GF    +V           +V R     R  
Sbjct: 195 VCRASRGAS-RMLVRSNATYLRGRRLNGEGFSMDLVVLLLDPQAQTTAYVVRDLTTRRKT 253

Query: 197 GKRLDKKFSHLHEIKKGHSSVEKEKYDIF--SQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254
              L +    +          + +   +F            +++            D V 
Sbjct: 254 ELDLVRVNKAVLGTSDAVLIGDGQGRTVFVNPAAERVFGYTLEDYAQHGGPTLLFCDRVE 313

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR----NHPS 310
                       S     E                  L ++  E   ++           
Sbjct: 314 GVNILGRAAQGHSWQGAFEAMTRT-GEPLAVTARLDGLTDDQGEPIGWILIATPVEERQR 372

Query: 311 LSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
                   + LT   ++   +    +     +  AN +F  +    S+ D+E    L  L
Sbjct: 373 AQQALQCQKRLTQLILETVAVGIVLLDDQLRIVQANRTFEAMVGV-SLADLEGRNWLDVL 431

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
              P     + +   +    +   +A    L   + + ++   +  +   +         
Sbjct: 432 KPNPPGDLAHRLHAAL----EGRSLAIPGELSFQRPDGQS--LVATLTLGRLVVEEGRPS 485

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSI 457
                 +  D   ++R +E     L SI
Sbjct: 486 LVVTLEDASDRIRDRRNLEAAHRLLESI 513



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 50/425 (11%), Positives = 109/425 (25%), Gaps = 50/425 (11%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK-----RQNTW 143
           +D    + + +      +G     + G    DV      +P   +   L      R    
Sbjct: 398 LDDQLRIVQANRTFEAMVGVSLADLEGRNWLDVLKP---NPPGDLAHRLHAALEGRSLAI 454

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPI--YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
            G+ +    +G +L   + L  L +     +   +       +   R       L + + 
Sbjct: 455 PGELSFQRPDGQSLVATLTLGRLVVEEGRPSLVVTLEDASDRIRDRRNLEAAHRLLESIQ 514

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSP---------PPHLRMKNKVSSLTEYYAHKDD 252
                    ++    +E+    +               PP     + +  L    A    
Sbjct: 515 LAQLQFIAGEEDEPILEELLSRLVELTDSEFGLLCELVPPLDGPASGIPRLRPLVALDRF 574

Query: 253 VLKTEKYPL----LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
            +   K        ++      E E      L Q         L   + +          
Sbjct: 575 TIHARKGGEIDQTTSTLGGRFLELERLFRDVLTQRQGVAVHDPLGEIAAQRGSKPPRSQR 634

Query: 309 PSLSAYFDEGENLTPE-----TVDKCPIPFFVYSH--GNLFYANPSF---LLLTKYKSVD 358
             + +                 ++   +P  + +   G +  AN        L  Y    
Sbjct: 635 SEIRSGSLASRVGLSAPDHPPIIEFLGMPLMLGNDLVGTVGVANRPGGYPPDLLNYLQPL 694

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN---------REN 409
               AG L  L              V   +++    A S  L T+               
Sbjct: 695 LHTAAGILKALRQRQSQQMAEVELRVAKLQAEEANRAKSVFLATMSHEIRTPMNAVVGMT 754

Query: 410 SLAMTFIPFEKANQFPENMPQ-----NGIEPEDVDTRI---NKRKMEIEVMQLCSILEAT 461
            L +      +  +F E +        G+  + +D       + ++E   ++L  ++E  
Sbjct: 755 ELLLDTPLTPEQREFTETIRASGNQLLGLINDILDLSKIESGRVELEEGPVRLRLVIERC 814

Query: 462 SDGIA 466
            + +A
Sbjct: 815 LELVA 819


>gi|313672134|ref|YP_004050245.1| multi-sensor hybrid histidine kinase [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312938890|gb|ADR18082.1| multi-sensor hybrid histidine kinase [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 834

 Score =  303 bits (776), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 82/400 (20%), Positives = 179/400 (44%), Gaps = 31/400 (7%)

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE-- 490
           +E          +++ +   +L +IL A+ DGI ++N    ++  +  ++K++    E  
Sbjct: 304 VEERTKQLSEKNKELALNNSKLNAILSASPDGIGVMNMNMELVFISDKLAKMYKIEPEKK 363

Query: 491 -DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
            + L K  T F++++    M   +++I        L    L      +   + +    L 
Sbjct: 364 FEYLNKNITDFVDESYRDKMMKNISDIFEGKKYWNLS-EYLVRDAYGEQFWVEVSSSLLY 422

Query: 550 FSS----CYSLTMHDISEWKQEKNKLSHAKKIAEK--------------ESSHKSDFLAR 591
             +           D +E K+ + +L    +  ++               +  KS+FLA 
Sbjct: 423 DDAQKPYGILFVERDCTERKRIEQQLLDYNEKLKENNRALNELKTKEEEANIAKSNFLAI 482

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           +SHE+RTPL  ++G  E+I           R+ E+   I  SG  +  ++ND+ D++K+E
Sbjct: 483 ISHELRTPLNGVLGLLELIHK------DPERFNEFFPVILSSGEQLRVLINDISDLTKVE 536

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
            GK+ L  +  S+   ++E +S  ++   +  + +          +  D   ++Q+  N+
Sbjct: 537 QGKLELVEKRFSISNFINEIVSYAKIKIQDSNLELVVDIEQFEGYLEGDAVRLRQVVYNL 596

Query: 712 LSNAIHFTPSG-GQIIISTTHTSNE--EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
           ++NAI +T +G  +++I     +++   +   V DTG+G++  +++   KPF ++  S  
Sbjct: 597 INNAIKYTDNGFVKVVIRKLFENDKIMRIYFEVTDTGIGISPNDIDNIFKPFKRLDGSYT 656

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            +  G+G+GL ++KA+++       + S   KG+      
Sbjct: 657 KKRYGSGIGLYISKAILNMMNSNINVESEVGKGSKFYFKL 696


>gi|228920286|ref|ZP_04083634.1| hypothetical protein bthur0011_13020 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228839485|gb|EEM84778.1| hypothetical protein bthur0011_13020 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 591

 Score =  303 bits (776), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 80/371 (21%), Positives = 154/371 (41%), Gaps = 39/371 (10%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            ++ E  QL SIL + +DG+  +N+EG ++  N           E+       + L +  
Sbjct: 249 ALQQEKEQLASILSSMADGVITLNQEGEVVVINPPAEHFLQVWQEEK-----EIELSKKL 303

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
           PS +      ++  + +Q +E        +   + L   +            + D++E +
Sbjct: 304 PSELVELFHLVVESEQQQVVEINLQ----KGNYVVLMTPLYNQTKIRGAVAVLRDMTEER 359

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + +                + DF+A VSHE+RTP+  + G+SE I +            E
Sbjct: 360 RLE--------------KMRQDFIANVSHELRTPMVMLQGYSEAILDDIVQT--KEEINE 403

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           +   I      +  +VN+LLD++++ESG + LH   V +   V +     Q  A +K + 
Sbjct: 404 FVQIIYDESVRLGKLVNELLDLARMESGNVELHIGEVDIHPFVEKIGRKFQGIAKDKEVA 463

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +   F + I +   D   ++Q+  N++ NAI  T +GG + +     +N  +I  V+D+G
Sbjct: 464 LTVDFKDPIEQYPFDADRMEQVLTNLIDNAIRHTNAGGHVTLVIDTKNNG-LIFEVQDSG 522

Query: 746 VGMTNYELEKAMKPFGQIPNSQQI-------RGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
            G+   ++      F +   ++          G        +AK +V  + GK  + S  
Sbjct: 523 AGIPEEDIPFLFDRFYKADKARTRGKKGGTGLGL------AIAKNIVQGHDGKISVSSVV 576

Query: 799 AKGTLIEIIFP 809
            +GT   +  P
Sbjct: 577 GEGTTFSVYLP 587


>gi|171059161|ref|YP_001791510.1| PAS/PAC sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
 gi|170776606|gb|ACB34745.1| PAS/PAC sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
          Length = 846

 Score =  303 bits (776), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 95/389 (24%), Positives = 169/389 (43%), Gaps = 31/389 (7%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           R +     +   I+E+T   + ++  +G I   N     LFGY    +        + + 
Sbjct: 312 RALNESESRANRIIESTPSAMVVVEADGTIARANTRAEALFGYDAGGMSGLAVDRLVPER 371

Query: 505 TPSVMNHYLTEILSLDLRQTLEK--ITLGSTKEEKLLSLRIIIKKL--PFSSCYSLTMHD 560
                  + +  +S    +T+ +        K+  L  + I +  L          ++ D
Sbjct: 372 VRDRHATHRSGFMSNGSTRTMGQGIELFACRKDGSLFPVEIGLAPLTTGEMRQTIASVID 431

Query: 561 ISEWKQEKNKLSHAKK------------------IAEKESSHKSDFLARVSHEIRTPLTA 602
           I++ K  + +L+  +                    AE+ +  K+ FLA +SHEIRTPL A
Sbjct: 432 ITQRKAMQAELTQHRDRLEEQVAARTVELVNARNEAERLAQVKAQFLANMSHEIRTPLNA 491

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           I G + +I+ Q      + +     + ++R+   +L ++N +L++SKI++G ++L  EPV
Sbjct: 492 IGGMAHLIRRQGL----SEKQTRQMDSLERASAHLLSVINSILELSKIDAGALHLASEPV 547

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
           S+   V E I L +  A +K I +R   A      + D   ++Q  LN +SNAI FT SG
Sbjct: 548 SVTSLVHEVIDLQRQQATDKHITLRCELALRTDAWVGDPTRLRQALLNYVSNAIKFTGSG 607

Query: 723 GQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
             ++I       +     +   V+DTG+G++   + +  K F Q  NS   +  GTGLGL
Sbjct: 608 A-VLIRVDPVDEDAASALIRFEVQDTGIGISPDAMPRLFKAFEQADNSHTRQYGGTGLGL 666

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEII 807
            + + +     G     S P  G+     
Sbjct: 667 AITRMVARQMGGDSGATSLPGVGSTFWFT 695


>gi|168761345|ref|ZP_02786352.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4501]
 gi|217327801|ref|ZP_03443884.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. TW14588]
 gi|189368285|gb|EDU86701.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4501]
 gi|217320168|gb|EEC28593.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. TW14588]
          Length = 949

 Score =  303 bits (776), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 99/495 (20%), Positives = 186/495 (37%), Gaps = 41/495 (8%)

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
             P+   +             + LT  +S    +                    + ++L 
Sbjct: 239 TLPMGVTILDENGHT-----LISLTGPESKIKADPRWMQERSWFGY----TEGFRELVLK 289

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV---DTRINK 444
           ++      +      +    E    +              +       E         + 
Sbjct: 290 KNLPPSSLSIVYSVPVDKVLERIRMLILNAILLNVLAGAALFTLARMYERRIFIPAESDA 349

Query: 445 RKMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            ++E        I+ +   GI I+   +G+ + +N            +  ++        
Sbjct: 350 LRLEEHEQFNRKIVASAPVGICILRTADGVNILSNELAHTYLNMLTHEDRQR-------- 401

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                    LT+I+       ++      T     L +  +  +    +     + D+S 
Sbjct: 402 ---------LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSS 448

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + +  L    + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R 
Sbjct: 449 RVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR- 506

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
                 ++ S +L+L I++D+LD SKIES ++ +     S  E ++   +        K+
Sbjct: 507 --LVTAMNNSSSLLLKIISDILDFSKIESEQLMIEPREFSPREVMNHITANYLPLVVRKQ 564

Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           + +      ++P  +  D   ++Q+  N+LSNAI FT +G  I++       + + +RVR
Sbjct: 565 LGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG-CIVLHVR-ADGDYLSIRVR 622

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTGVG+   E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+
Sbjct: 623 DTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGS 682

Query: 803 LIEIIFPLYDTSHPH 817
              +  PLY   +P 
Sbjct: 683 QFTVRIPLYGAQYPQ 697


>gi|229149775|ref|ZP_04278005.1| hypothetical protein bcere0011_13330 [Bacillus cereus m1550]
 gi|228633806|gb|EEK90405.1| hypothetical protein bcere0011_13330 [Bacillus cereus m1550]
          Length = 591

 Score =  303 bits (776), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 80/371 (21%), Positives = 154/371 (41%), Gaps = 39/371 (10%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            ++ E  QL SIL + +DG+  +N+EG ++  N           E+       + L +  
Sbjct: 249 ALQQEKEQLASILSSMADGVITLNQEGEVVVINPPAEHFLQVWQEEK-----EIELSKKL 303

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
           PS +      ++  + +Q +E        +   + L   +            + D++E +
Sbjct: 304 PSELVELFHLVVESEQQQVVEINLQ----KGNYVVLMTPLYNQTKIRGAVAVLRDMTEER 359

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + +                + DF+A VSHE+RTP+  + G+SE I +            E
Sbjct: 360 RLE--------------KMRQDFIANVSHELRTPMVMLQGYSEAILDDIVQT--KEEIDE 403

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           +   I      +  +VN+LLD++++ESG + LH   V +   V +     Q  A +K + 
Sbjct: 404 FVQIIYDESVRLGKLVNELLDLARMESGHVELHIGEVDIHPFVEKIGRKFQGIAKDKEVA 463

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +   F + I +   D   ++Q+  N++ NAI  T +GG + +     +N  +I  V+D+G
Sbjct: 464 LTVDFKDPIEQYPFDADRMEQVLTNLIDNAIRHTNAGGHVTLVIDTKNNG-LIFEVQDSG 522

Query: 746 VGMTNYELEKAMKPFGQIPNSQQI-------RGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
            G+   ++      F +   ++          G        +AK +V  + GK  + S  
Sbjct: 523 AGIPEEDIPFLFDRFYKADKARTRGKKGGTGLGL------AIAKNIVQGHDGKISVSSVV 576

Query: 799 AKGTLIEIIFP 809
            +GT   +  P
Sbjct: 577 GEGTTFSVYLP 587


>gi|242238486|ref|YP_002986667.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Dickeya dadantii Ech703]
 gi|242130543|gb|ACS84845.1| histidine kinase [Dickeya dadantii Ech703]
          Length = 934

 Score =  303 bits (776), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 95/382 (24%), Positives = 160/382 (41%), Gaps = 28/382 (7%)

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKP 496
           +    N  ++E        I+ +   GI+I+   +G  + +N            +   + 
Sbjct: 323 LPAERNALQLEENEQFNRKIVASAPVGISILRISDGTNIISNELAHNYLNLLAYEDRTR- 381

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556
               +     S     +                   T     L +  +  +    +    
Sbjct: 382 -ITKIICEQQSKSLDVV-------------------TSRNHHLQISFVHSRYRNENVAIC 421

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            + D+S   + +  L      AE+ S  KS FLA VSHE+RTPL  IIG  ++++ +   
Sbjct: 422 VLLDVSARVRMEESLQEMANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLRTKSLS 481

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
              N         +  S +L+L I++D+LD SKIES ++ +     +  E ++  IS   
Sbjct: 482 RDAN----RLVEAMQNSSSLLLKIISDILDFSKIESEQLKIEPGRFAPREVINHIISNYL 537

Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
               +KR+ +      ++P  IL D   ++Q+  N+LSNAI FT +G  I++      + 
Sbjct: 538 PLVVKKRLTLYCYIEPSVPVSILGDAVRLQQVLSNLLSNAIKFTDTG-CIVLQVQRRHDG 596

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            +  +VRDTGVG+    + K   PF Q     Q   +GTGLGL + + +V    G   I 
Sbjct: 597 YLAFQVRDTGVGIEPRSVMKLFDPFYQAGTGVQRHFQGTGLGLAICEKLVSLMDGDISIE 656

Query: 796 STPAKGTLIEIIFPLYDTSHPH 817
           S P  G+L  +  PLY   +P 
Sbjct: 657 SEPGLGSLFGVRIPLYQAQYPQ 678


>gi|254470617|ref|ZP_05084021.1| autoinducer 2 sensor kinase/phosphatase LuxQ, putative
           [Pseudovibrio sp. JE062]
 gi|211960928|gb|EEA96124.1| autoinducer 2 sensor kinase/phosphatase LuxQ, putative
           [Pseudovibrio sp. JE062]
          Length = 794

 Score =  303 bits (776), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 100/382 (26%), Positives = 177/382 (46%), Gaps = 25/382 (6%)

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
              R++  E  +  +ILE+ SD I +++  G +   N A   +F       L+     ++
Sbjct: 156 EENRRITNEKNKYLTILESLSDPIVLMDENGKVNDLNYAAQAVF-----CGLQNTKIKYV 210

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI--IIKKLPFSSCYSLTMH 559
            + T  V+ + L   L  +L      +TL +    ++  +R   I+          L ++
Sbjct: 211 NEATRDVLTNQLQPYLPQELESCFTDVTLDTAVGPRVFDIRAQHIVDFSRKFPGMILILN 270

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           D+++          AK+ AE  +S KS FLA +SHEIRTPL  ++G ++++K+    P  
Sbjct: 271 DVTDH-------KKAKEEAEAANSAKSTFLASMSHEIRTPLNGVLGLADLLKDTGLKP-- 321

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
                 Y + I  S  ++  I+ND+LD SK+E+G + L      + + + + + L +  A
Sbjct: 322 --EQHRYLDGIISSSEMLRSILNDVLDYSKVEAGSLELETVDFKIRQVIKQVVDLTRQQA 379

Query: 680 NEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIIST-----THTS 733
            +K + +      ++P I  AD   ++Q+ LN +SNAI FT  G  I IS          
Sbjct: 380 EDKGLELLIDVHPHVPEILRADPTKIRQVLLNFVSNAIKFTNEGS-ITISVHIPISQIRR 438

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
              + + V+DTGVG+   +     +PF Q   +      GTGLGL ++K +V+A  G+  
Sbjct: 439 ARCLQIMVKDTGVGLPEGDHSYLFEPFVQQNAATNRLYGGTGLGLAISKRLVNAMGGEIG 498

Query: 794 IFSTPAKGTLIEIIFPLYDTSH 815
             +   +G +     P Y+   
Sbjct: 499 CKANQTQGAVFHFTVPFYEADQ 520


>gi|229589677|ref|YP_002871796.1| putative two-component system sensor kinase [Pseudomonas
           fluorescens SBW25]
 gi|229361543|emb|CAY48419.1| putative two-component system, sensor kinase [Pseudomonas
           fluorescens SBW25]
          Length = 1206

 Score =  303 bits (776), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 137/771 (17%), Positives = 273/771 (35%), Gaps = 90/771 (11%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR---QNTWYGKT 147
           A     E++       G+         L  V+  L + P     ++L+R     + + + 
Sbjct: 231 ADFSALEVNPFGFAFTGDN-----IRLLKIVNAALAVIPAGQQMEILRRWSAGGSGFLEA 285

Query: 148 TLWPIEGTNLYV-----PIDLAAL----PI--YSRNREFSGFRGFGIVHV---------- 186
               +  +          + +AAL    P+  ++   +F G     +  +          
Sbjct: 286 DRLRLSDSEQRWLEKHPRVKVAALDKFMPLSFFNEQGQFIGLSDEVLSRISLRTGLKFEV 345

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY 246
            +  + PR + +    +   +  I       EK ++      +P   +   +    LT  
Sbjct: 346 VQGSSLPRQVDEVSAGQVEMMAVITPSVERSEKVRFTRPYLSNPYVLVARASDEHLLTLE 405

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
                 +       L        P        N  Q  +    G +              
Sbjct: 406 DMPGKRLAFIGGNSLAVQVARDYPGIVFVAVENPEQAMELVAKGGVDATVVSLISA---- 461

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
               + A           TV   P              N S L L        + I    
Sbjct: 462 --RYMIARHYRDRLRITSTVGTEPARIA-------LGVNRSQLELYSILEKALLSITP-- 510

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
                         +  +  +            +    W    ++ +             
Sbjct: 511 ------------EEMDELTNHWRS------EIIIEDSYWISHRNVIIQGFGLAAVLLLVT 552

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
                 +          +R +  ++  +  +++ T   I + +R+G +++ N A   +FG
Sbjct: 553 LGWVLYLRNLIHKRAQAERALSDQMRFMSVLIDGTPHPIYVRDRQGRLMACNNAYLDVFG 612

Query: 487 YPVEDILRKPFTVF---LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           + +ED++ K              S    YL  ++     Q  +++         +L++  
Sbjct: 613 FKLEDVIGKTVVETDTGNPPQAQSFHADYL-SLMERGEPQIHDRVL--KVPGGGVLTIYQ 669

Query: 544 IIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
            +     S+           D+SE ++   +L  AK+ A+  +  K+ FLA +SHEIRTP
Sbjct: 670 WMLPYRDSNGNVVGMIAGWVDVSERQRLLGQLQEAKEEADAANRAKTTFLATMSHEIRTP 729

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           + A+IG  E+ +        +   +E A+   RS   +L+++ D+LDI++IE+G ++L  
Sbjct: 730 MNAVIGMIELAQKNAEQGRVDQDALEVASMASRS---MLELIGDILDIARIETGHLSLTL 786

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P +L E ++    + +  A +K +L+       I R +L D    KQ+  N+L NAI F
Sbjct: 787 APANLHEMLASVARVFEGLARDKGLLLHVELDPMIDRSVLIDPMRFKQVVSNLLGNAIKF 846

Query: 719 TPSGGQIIISTTHT-----SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
           T +G Q+ +    T         + L V DTG+G++  + ++   PF Q  N+ Q    G
Sbjct: 847 TATG-QVRLGAQCTPALASDPLNLRLYVEDTGIGISAEDQQRLFNPFIQGSNNDQSARSG 905

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF--------PLYDTSHP 816
           +GLGL +++ + +   G+ ++ S   KGT +++          PL  ++ P
Sbjct: 906 SGLGLVISRNLCEMMGGQLHLSSVLGKGTRVDVTLALELATAAPLSSSAPP 956



 Score = 43.9 bits (102), Expect = 0.10,   Method: Composition-based stats.
 Identities = 34/300 (11%), Positives = 72/300 (24%), Gaps = 9/300 (3%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP---NNHIGDLLKRQNTWYGK 146
           D  G L   +       G     +IG  + +            +     L++R       
Sbjct: 595 DRQGRLMACNNAYLDVFGFKLEDVIGKTVVETDTGNPPQAQSFHADYLSLMERGEPQIHD 654

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
             L    G    + I    LP    N    G     I     V    R LG+  + K   
Sbjct: 655 RVLKVPGGG--VLTIYQWMLPYRDSNGNVVGM----IAGWVDVSERQRLLGQLQEAKEEA 708

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
               +   + +    ++I +  +    +    + ++           + +     +    
Sbjct: 709 DAANRAKTTFLATMSHEIRTPMNAVIGMIELAQKNAEQGRVDQDALEVASMASRSMLELI 768

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
             + +     T +L+          +  +    FE L+      L    D   + +    
Sbjct: 769 GDILDIARIETGHLSLTLAPANLHEMLASVARVFEGLARDKGLLLHVELDPMIDRSVLID 828

Query: 327 DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
                       GN      +  +    +    +        L         +A     L
Sbjct: 829 PMRFKQVVSNLLGNAIKFTATGQVRLGAQCTPALASDPLNLRLYVEDTGIGISAEDQQRL 888


>gi|290892560|ref|ZP_06555553.1| sensory box histidine kinase [Listeria monocytogenes FSL J2-071]
 gi|290557869|gb|EFD91390.1| sensory box histidine kinase [Listeria monocytogenes FSL J2-071]
          Length = 610

 Score =  303 bits (776), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 80/398 (20%), Positives = 167/398 (41%), Gaps = 29/398 (7%)

Query: 424 FPENMPQNGIEPEDVDTRINKRKM--EIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
             + + +       +  R+ + +   E E  +L S+L   +DG+   +R G ++  N   
Sbjct: 236 GVDEIGELADSFNTLTKRVQEAQAMTEGERRKLSSVLAYMTDGVIATDRRGKVILINTPA 295

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT-EILSLDLRQTLEKITLGSTKEEKLLS 540
            K+     E    +     L+          +  +      R T +K  +          
Sbjct: 296 EKMLRVKHESANGRSIIDVLDIGDTYQFEDLMEVDGSLTMDRSTFDKPYVLRAN------ 349

Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
             +I ++  F++     +HDI++ ++   +              + DF++ VSHE+RTPL
Sbjct: 350 FSVIQRETGFNNGVIAVLHDITDQEKVDQE--------------RRDFVSNVSHELRTPL 395

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
           T++  + E + +  +          +          ++ +VNDLL +S+++ G+  L   
Sbjct: 396 TSMHSYLEALSDGAW--EDKEIAPRFLEVTQNETERMIRLVNDLLKLSRMDGGREQLEKS 453

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720
            V+  +  +  I   +    ++ I+ +         I  D   V Q+  NI+SNA  ++P
Sbjct: 454 FVNFTDFFNHIIDRFE-MMKKETIMFKRHIPREPVIIEIDEDKVMQVLDNIISNANKYSP 512

Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
            GG+I        + E+ + + D G+G+ + +L      F ++  ++     GTGLGL +
Sbjct: 513 DGGRISFYLKKFED-EIEVSIADEGLGVPDEDLANVFDRFFRVDKARSREMGGTGLGLAI 571

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
           A+ +++A+ G+ +      KGT+I+   P   +  P D
Sbjct: 572 AREVIEAHGGRIWAERNKTKGTIIKFTLP--YSDLPED 607


>gi|83747379|ref|ZP_00944419.1| Hypothetical Protein RRSL_02899 [Ralstonia solanacearum UW551]
 gi|83725966|gb|EAP73104.1| Hypothetical Protein RRSL_02899 [Ralstonia solanacearum UW551]
          Length = 1000

 Score =  303 bits (776), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 106/622 (17%), Positives = 203/622 (32%), Gaps = 38/622 (6%)

Query: 220 EKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTIN 279
                  +++    L     ++ LT     + D        +      S           
Sbjct: 8   AAPVHLWRRAGTALLLCATAIALLTASDYTQADDATRALRQMGPPPAPSAAAPMARCAPA 67

Query: 280 LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH- 338
                      ++++           R      A      +     ++  P P       
Sbjct: 68  AAIVLWTLTVLSIRHMQLRRET----RQRRHTEATLARQLDFQHMLMESLPFPLAAQDTQ 123

Query: 339 GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398
                 N +F  L        +        L           ++ +          A  A
Sbjct: 124 HRYVAVNAAFCHLFGRSREAVLGRTPAHLGL---GCARTTARVQDIDRRAVATGQDAREA 180

Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI----EPEDVDTRINKRKMEIEVMQL 454
              T    RE  +     P    +  P     + I         + R  + + + +  +L
Sbjct: 181 LTITAADGRERRVLYWVAPLRLPDGQPGGTVASLIDLSNLSNLSEIREAQARAKRQAQRL 240

Query: 455 CSILEATSDGIAII-----NREGIILSTNRAVSKLFGYPVEDILRK--PFTVFLEQNTPS 507
              +E+    +  +        G I     +  +  G   +            + Q+   
Sbjct: 241 HDSIESLPALVCQVEMRPGTTRGRIRYMAGSARETLGAQTDAAPFLLPSPARLVHQDDRR 300

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---YSLTMHDISEW 564
            M+     + S      L++       +  +  L               ++  + D+++ 
Sbjct: 301 RMHDA--ALQSATQLTPLDQPFRHVGGDGSVRWLHAHALPRREPDGRTVWTGYLRDVTQE 358

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           +   + L  A++ AE     K  FLA +SHEIRTP+  ++G  E++              
Sbjct: 359 RARADALEAARQAAESALHAKDRFLATMSHEIRTPMNGVLGLVELLLQTPLER----EQQ 414

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
                   S   +L I++D+LD +KIE+G + +   P  L E     + L+   A+E+ +
Sbjct: 415 RMVTLAQESSRALLHILDDILDYAKIEAGHLAVTPAPTDLRELFDSTVGLLAGRAHERSL 474

Query: 685 LIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH----TSNEEVIL 739
            +R      +P  +  D   ++Q+  N+LSNAI FT  G  + +S       T    +I+
Sbjct: 475 SVRVEVDAAVPATVSVDGMRLRQVLSNLLSNAIKFTERGS-VHLSAACVGAATDTAHLII 533

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
           R+ DTG+G+          PF Q  +    R  GTGLGL +++ +     G   + STP 
Sbjct: 534 RIADTGIGIAPEAQATLFTPFVQADSPAARRHGGTGLGLAISRQLARLMGGSLDMDSTPG 593

Query: 800 KGTLIEIIF--PLYDTSH--PH 817
            GT + +    P+ +  +  PH
Sbjct: 594 VGTTLTLRLETPVINARYRRPH 615



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/257 (8%), Positives = 57/257 (22%), Gaps = 19/257 (7%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS---DILHIDPNNHIGDLLKRQNTWYGK 146
           D       ++       G     ++G     +            +     +         
Sbjct: 121 DTQHRYVAVNAAFCHLFGRSREAVLGRTPAHLGLGCARTTARVQDIDRRAVATGQDAREA 180

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI--------VHVNRVDNDPRALGK 198
            T+   +G    V   +A  P+   + +  G     I          +       +   +
Sbjct: 181 LTITAADGRERRVLYWVA--PLRLPDGQPGGTVASLIDLSNLSNLSEIREAQARAKRQAQ 238

Query: 199 RLDKKFSHLHEIKKGH---SSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA---HKDD 252
           RL      L  +           + +    +  +        +    L    A   H+DD
Sbjct: 239 RLHDSIESLPALVCQVEMRPGTTRGRIRYMAGSARETLGAQTDAAPFLLPSPARLVHQDD 298

Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
             +     L ++ + +  +Q   H                +        +  +    +  
Sbjct: 299 RRRMHDAALQSATQLTPLDQPFRHVGGDGSVRWLHAHALPRREPDGRTVWTGYLRDVTQE 358

Query: 313 AYFDEGENLTPETVDKC 329
               +      +  +  
Sbjct: 359 RARADALEAARQAAESA 375


>gi|254189618|ref|ZP_04896128.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254264527|ref|ZP_04955392.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 1710a]
 gi|157937296|gb|EDO92966.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254215529|gb|EET04914.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 1710a]
          Length = 1014

 Score =  303 bits (776), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 126/677 (18%), Positives = 232/677 (34%), Gaps = 59/677 (8%)

Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH 233
           +F   +G+ ++H  +      A+G     +          + ++ + +  +   QSP P 
Sbjct: 111 QFDAHQGYAVLHTPQGAPAALAVGIPAPGRS---ASAFAPYLALLETQLLMGDGQSPLPD 167

Query: 234 LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293
            R++    S    Y       + +         S+                 +     + 
Sbjct: 168 DRVEGYSFSPDGTYLSLLWSREDQAPEAFIESHSASGL---IGDAMRGIRYLRDASTIVP 224

Query: 294 NNSKESFEYLSHRNHP--------SLSAYFDEGENLTPETVDKCPIPFF----------- 334
             +     +L     P         +    D    L    V   P+  F           
Sbjct: 225 LRADRRTVWLPPHPDPLTGKPMIRIVQPAIDATGKLFAIYVRSLPLDMFYSNLNDAPAGS 284

Query: 335 ----VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390
               V   GN+   + +        +   + I       L           +  M   SD
Sbjct: 285 TLTIVDRKGNVILGSSNQHGGDGGATASALGI-----RSLGDGFGGLVERYQDGMFVTSD 339

Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR------INK 444
           +        +H   W    + A+              +    +     D +         
Sbjct: 340 QLPGTDWVLVHAYSWK-TIAAALALRFSLVTGLVAGIIVMLWLFAIQFDRKGLIPNYRRA 398

Query: 445 RKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
           +++    +   +IL     G+ +++  +G +L  N A+ +L     ++ L          
Sbjct: 399 QRLLESEVLNRTILRTAPVGLGLLSAQDGSVLLQNNAMLELSARTSDEPLPIRLWEAYRH 458

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                 +               +            L   ++  +   ++    T+ DIS 
Sbjct: 459 AVGRSSDE-------DGALLQHDLAIEREGANPVYLQANVVAARYRGANVLLCTLLDISL 511

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            K+ + KL  A+  A++ +  KS FLA +SHEIRTPL AIIG  E+++        + + 
Sbjct: 512 RKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPL----SEQQ 567

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            E  + ++   N +L I+ND+LD+SK+ESG+M L   P  +   + E +      A  K 
Sbjct: 568 SERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAYAPLAESKG 627

Query: 684 ILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIST----THTSNEEVI 738
           + + +S    + R    D   ++Q+  N++ NAI FT  G  I I             + 
Sbjct: 628 LALLSSIGEGVARHYTGDPTRIRQVLSNLIGNAIKFTERG-HISIDVHRAKAARDGSAIE 686

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           + V DTG+G+    +      + Q   S   R  G+GLGLPL + +V    G   I S P
Sbjct: 687 IWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLP 746

Query: 799 AKGTLIEIIFPLYDTSH 815
             GT + +  PL +  H
Sbjct: 747 DFGTTVTVALPLREARH 763


>gi|183219846|ref|YP_001837842.1| putative two-component sensor protein [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|189909977|ref|YP_001961532.1| two component response regulator sensor histidine kinase/response
           regulator subunits [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167774653|gb|ABZ92954.1| Sensor and regulator protein of a two component response regulator
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167778268|gb|ABZ96566.1| Putative two-component sensor protein [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
          Length = 710

 Score =  303 bits (776), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 98/394 (24%), Positives = 159/394 (40%), Gaps = 17/394 (4%)

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
           +     +       +      L   L +  D +   +  GII   N     L G+  ++ 
Sbjct: 166 VITRAKEVIEKNEALLNSEQNLSITLSSIGDAVLATDEHGIINRLNPVAESLIGWTAKEA 225

Query: 493 LRKPFTVFLEQNTPSVMNH---YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
           + K     L+    S        + E++S    +   +  +   +  + +++      + 
Sbjct: 226 IGKNVNEVLQLVYASSGLPKSIPIFEVISNGTVKGSSQDGILIHRYGRKINISDTCSPIR 285

Query: 550 FSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
             +   +       DISE    K  L  AK+ AE  +  K  FLA +SHEIRTPL+ +IG
Sbjct: 286 NKNGEIIGSILVFRDISEEFAAKTYLEKAKENAEMANKAKDSFLATMSHEIRTPLSGLIG 345

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
             E++         N       N    SGN +L I++D+LD+SKIE GK+ L  +P S+ 
Sbjct: 346 MLELLYQTSL----NDDQKSLVNNALVSGNSLLRILSDILDLSKIEEGKLELSLQPTSIS 401

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQ 724
             +SE  +     A+ K + +  +    I      D   + QI  N +SN I FT  G  
Sbjct: 402 RLLSEVATTYLQIASSKGLTLSYAVDEKITSAHILDSLRLSQIINNFVSNGIKFTSKGS- 460

Query: 725 IIISTTHTSN----EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
           I IS     N    +++   V DTG+G++  +  K  + + Q          GTGLGL +
Sbjct: 461 IHISANLIKNIDTLQQIQFSVTDTGIGLSKTDQSKLFQSYTQATADTARLYGGTGLGLAI 520

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
              + +   G   I S P  G+   I   L  T 
Sbjct: 521 CMRLSELMDGNITIDSLPGSGSTFSITLSLPTTE 554



 Score = 40.4 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 26/251 (10%), Positives = 68/251 (27%), Gaps = 15/251 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS----DILHIDPNNHIGDLLKRQNT-- 142
            D HG +  ++      IG  A + IG  + +V         +  +  I +++       
Sbjct: 201 TDEHGIINRLNPVAESLIGWTAKEAIGKNVNEVLQLVYASSGLPKSIPIFEVISNGTVKG 260

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
                 L    G  + +    +  PI ++N E  G     +      +   +   ++  +
Sbjct: 261 SSQDGILIHRYGRKINISDTCS--PIRNKNGEIIG--SILVFRDISEEFAAKTYLEKAKE 316

Query: 203 KFSHLHEIKKGHSSVEKEKYD-----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257
                ++ K    +    +       +           + +   SL        + L   
Sbjct: 317 NAEMANKAKDSFLATMSHEIRTPLSGLIGMLELLYQTSLNDDQKSLVNNALVSGNSLLRI 376

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
              +L   +    + E             +   T    +      LS+     +++    
Sbjct: 377 LSDILDLSKIEEGKLELSLQPTSISRLLSEVATTYLQIASSKGLTLSYAVDEKITSAHIL 436

Query: 318 GENLTPETVDK 328
                 + ++ 
Sbjct: 437 DSLRLSQIINN 447


>gi|209521921|ref|ZP_03270590.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. H160]
 gi|209497644|gb|EDZ97830.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. H160]
          Length = 657

 Score =  303 bits (776), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 92/512 (17%), Positives = 179/512 (34%), Gaps = 19/512 (3%)

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPI--PFFVYSHGNLFYANPSFLLLTKYKSVDDIE 361
                 + +A            V          + + G++   N     L  Y   + + 
Sbjct: 14  GPARVQAEAAPSAPVGVDHASLVQAISDYAIILLDATGHVMSWNAGAQNLEGYTESEIVG 73

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                S       ++       +                  ++ +     A   +     
Sbjct: 74  Q--HFSRFQTEEAVASGWPTYELGQAALTGR---FEDEGWRVRKDGTTFWA-NVVITAVH 127

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNRA 480
           ++         I  +    R     +     +   ++++  D  I +++ +G ++S N  
Sbjct: 128 DEAGTLTGFAKITRDLTAQRDYLDALRQSEERFRLLVDSVKDYAIFMLDPQGFVVSWNAG 187

Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
            +++ GY  ++I+ + F++       +       E+       T+E       K+     
Sbjct: 188 AARINGYRHDEIVGRHFSLLYVPGEAAAGKPT-RELAIARQIGTVEDEGWRVRKDGSTFW 246

Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
             +II  +   +        I             ++  E+ S    DFLA ++HE+R PL
Sbjct: 247 ANVIITAVYDEARQLRGFAKI----TRDLTERRRREELERSSERMRDFLATLAHELRNPL 302

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
             +      ++ +        R  +    IDR    +  +V+DLLDI +I S K+ L   
Sbjct: 303 APVRNAVGTMQMETGLSPALVRARDL---IDRQVTHLTRLVDDLLDIGRIMSDKVELRIS 359

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720
            V L E V+ AI   + + + +   +     ++   I  D+  + Q+  N+L NA  F+P
Sbjct: 360 RVDLAELVARAIEAARPFTDAREQRVVAHVPDDPVVIRGDMTRLVQVLQNLLHNASKFSP 419

Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
            G  I +          +L VRD G G+    L+K  + F Q    Q     G G+GL L
Sbjct: 420 DGSVIDV-LGRIDFRMAVLEVRDPGCGIPVRSLDKIFELFAQEKEGQYFGEGGLGIGLTL 478

Query: 781 AKAMVDANMGKFYIFST-PAKGTLIEIIFPLY 811
            K++V+ + G     S  P  G+   +  PL 
Sbjct: 479 CKSLVEMHGGSIVASSEGPGLGSTFTLSLPLA 510



 Score = 68.5 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 26/263 (9%), Positives = 71/263 (26%), Gaps = 7/263 (2%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ--NTW 143
            + +D  G++   +    +  G    +++G     +             +L   +   T 
Sbjct: 172 IFMLDPQGFVVSWNAGAARINGYRHDEIVGRHFSLLYVPGEAAAGKPTRELAIARQIGTV 231

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +      +G+  +  + + A  +Y   R+  GF         R   +         + 
Sbjct: 232 EDEGWRVRKDGSTFWANVIITA--VYDEARQLRGFAKITRDLTERRRREELERSSERMRD 289

Query: 204 FSHL--HEIKKGHSSVEKEKYDIFSQQ-SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
           F     HE++   + V      +  +    P  +R ++ +     +     D L      
Sbjct: 290 FLATLAHELRNPLAPVRNAVGTMQMETGLSPALVRARDLIDRQVTHLTRLVDDLLDIGRI 349

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
           +    E  +   +    +       + +    +                 ++      +N
Sbjct: 350 MSDKVELRISRVDLAELVARAIEAARPFTDAREQRVVAHVPDDPVVIRGDMTRLVQVLQN 409

Query: 321 LTPETVDKCPIPFFVYSHGNLFY 343
           L        P    +   G + +
Sbjct: 410 LLHNASKFSPDGSVIDVLGRIDF 432



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 41/399 (10%), Positives = 112/399 (28%), Gaps = 28/399 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID---PNNHIGDLLKRQNTWYG 145
           +DA G++   +       G    +++G           +    P   +G        +  
Sbjct: 47  LDATGHVMSWNAGAQNLEGYTESEIVGQHFSRFQTEEAVASGWPTYELGQAALTGR-FED 105

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +      +GT  +  + + A  ++      +GF    I        D     ++ +++F 
Sbjct: 106 EGWRVRKDGTTFWANVVITA--VHDEAGTLTGFAK--ITRDLTAQRDYLDALRQSEERFR 161

Query: 206 HLHEIKKGHSS--VEKEKYDIFSQQSPPPHLRMKNKVSS---LTEYYAHKDDVLKTEKYP 260
            L +  K ++   ++ + + +            ++        +  Y   +         
Sbjct: 162 LLVDSVKDYAIFMLDPQGFVVSWNAGAARINGYRHDEIVGRHFSLLYVPGEAAAGKPTRE 221

Query: 261 LLTSEESSLPEQEDFH-TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
           L  + +    E E +    + + +        + + +++   +       +     +E E
Sbjct: 222 LAIARQIGTVEDEGWRVRKDGSTFWANVIITAVYDEARQLRGFAKITRDLTERRRREELE 281

Query: 320 NLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
             +    D          +      N    +  +      +  A  L            +
Sbjct: 282 RSSERMRDFLATLAHELRNPLAPVRNAVGTMQMETGLSPALVRARDL------IDRQVTH 335

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
             + V         ++    L   + +    +A             E      +  + V 
Sbjct: 336 LTRLVDDLLDIGRIMSDKVELRISRVDLAELVARAIEAARPFTDAREQRVVAHVPDDPVV 395

Query: 440 TRINKRKMEIEVMQLCSILEAT----SDGIAIINREGII 474
            R +  ++   V  L ++L        DG ++I+  G I
Sbjct: 396 IRGDMTRL---VQVLQNLLHNASKFSPDG-SVIDVLGRI 430


>gi|330977654|gb|EGH77557.1| PAS protein [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 782

 Score =  303 bits (776), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 110/489 (22%), Positives = 198/489 (40%), Gaps = 23/489 (4%)

Query: 329 CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388
                F               L++   S + IE++  L   L +    D  AI       
Sbjct: 108 LSSGIFEERLQMTATVGEDPALISMATSRNAIELSSILDKALASIAPQDMAAINNRWRVY 167

Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
           +               W+    L    +                +  +       +R + 
Sbjct: 168 TP----------SRANWHDYERLIYQIVVGAGLLLLGLLAWNAWMRRQIRQREAAERALG 217

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
            +   + +++E T   I + +REG++   N +  ++F    EDI+ K  T  +  N    
Sbjct: 218 DQFEFMRALVEGTPHPIYVRDREGMLRMCNDSYLRVFSAQREDIIGKSATEGVLGNAFEA 277

Query: 509 --MNHYLTEILSLDLRQTLEKITLGSTKEEKLL-SLRIIIKKLPFSSCYSLTMHDISEWK 565
                    +++ +    L++      ++  +   +      L           DISE +
Sbjct: 278 REYAADYQRVMASNTALILDRPLRIGDRQLTIYHWILPFRDSLGEVQGIIGGWIDISERR 337

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           Q    L  AK+ A+  S  KS FLA +SHEIRTP+ A+IG  E+   +      +     
Sbjct: 338 QLIEDLQAAKEQADAASRAKSTFLATMSHEIRTPMNAVIGMLELALKRADHGELD---RS 394

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
                  S N +LD++ D+LDI++IESG+++L+ E  +L   V   + +    A +K + 
Sbjct: 395 AIEVAYSSANDLLDLIGDILDIARIESGRLSLNPERANLRRLVESVLRVFDGLARQKDLE 454

Query: 686 IRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-----EVIL 739
           +     + I   +L D    KQI  N++SNAI FTP G +I +      +       + +
Sbjct: 455 LVLELDSRISADVLIDPLRFKQILSNLVSNAIKFTPMG-RIKVVLQAAESPNPQLLHLHI 513

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V+D+G+G++  + ++  +PF Q  N+ Q+   G GLGL + + +     G   ++STP 
Sbjct: 514 TVQDSGIGISVEDQQRLFEPFAQADNTGQMARTGAGLGLVICRNLCMMMGGNLSLYSTPG 573

Query: 800 KGTLIEIIF 808
            GT I +  
Sbjct: 574 HGTRISMNL 582



 Score = 42.3 bits (98), Expect = 0.31,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 53/240 (22%), Gaps = 12/240 (5%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCD--VSDILHIDPNNHIGDLLKRQNTWYGKT 147
           D  G L+  ++   +        +IG    +  + +             +   NT     
Sbjct: 238 DREGMLRMCNDSYLRVFSAQREDIIGKSATEGVLGNAFEAREYAADYQRVMASNTALILD 297

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
               I    L +   +  LP      E  G  G  I              +   ++    
Sbjct: 298 RPLRIGDRQLTIYHWI--LPFRDSLGEVQGIIGGWI--DISERRQLIEDLQAAKEQADAA 353

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
              K    +    +                 +++     +   D       Y        
Sbjct: 354 SRAKSTFLATMSHEIRTPMNAVIGML-----ELALKRADHGELDRSAIEVAYSSANDLLD 408

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY-LSHRNHPSLSAYFDEGENLTPETV 326
            + +  D   I   + +       L+   +              L    +    ++ + +
Sbjct: 409 LIGDILDIARIESGRLSLNPERANLRRLVESVLRVFDGLARQKDLELVLELDSRISADVL 468


>gi|260770504|ref|ZP_05879437.1| periplasmic Sensor Hybrid Histidine Kinase [Vibrio furnissii CIP
           102972]
 gi|260615842|gb|EEX41028.1| periplasmic Sensor Hybrid Histidine Kinase [Vibrio furnissii CIP
           102972]
          Length = 807

 Score =  303 bits (776), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 74/255 (29%), Positives = 123/255 (48%), Gaps = 7/255 (2%)

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            M    +  +    L  AK  AE  +  KS F++ +SHEIRTP+ +I+G S ++      
Sbjct: 444 VMRMGDKLDKLTGALKDAKLQAENANMAKSQFISNISHEIRTPMNSILGMSHLLMTSNL- 502

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
              +     +   ID+SG  +L ++ND+LD+SKI++GK+++   P  L   V +   + +
Sbjct: 503 ---SDDQRNHLITIDKSGKHLLSLINDILDMSKIDAGKVDIEEIPFDLAALVYDVHDIFE 559

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNE 735
             A +  + +      ++P +L D   +KQI LN +SNAI FT  G   I +    TS  
Sbjct: 560 YKAKKHGVKLHLDLDKSLPPLLGDPFRIKQIMLNFVSNAIKFTEQGDVTIRVQGAVTSES 619

Query: 736 --EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
              + L V D G+G++  +  K  + F Q   S   +  GTGLGL + K +     G+  
Sbjct: 620 VFALRLSVEDNGIGLSTDDQMKVFESFQQADASTTRKYGGTGLGLAICKRIAHLMGGEVG 679

Query: 794 IFSTPAKGTLIEIIF 808
           + S    G+   +  
Sbjct: 680 VESRLGDGSTFWLTL 694


>gi|209809121|ref|YP_002264659.1| response regulator, histidine kinase [Aliivibrio salmonicida
           LFI1238]
 gi|208010683|emb|CAQ81070.1| response regulator, histidine kinase [Aliivibrio salmonicida
           LFI1238]
          Length = 891

 Score =  303 bits (776), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 92/252 (36%), Positives = 143/252 (56%), Gaps = 8/252 (3%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           ISE    ++K+  AK+ AE+ +  KS FLA +SHEIRTPL  IIG S ++   +  P+  
Sbjct: 359 ISERAMNEDKIVGAKEEAEQANLAKSTFLANMSHEIRTPLNGIIGMSGILSETKLTPI-- 416

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
               +Y N I+ S   +L ++ND+LDISKIESG ++LH     L E + + +S++   AN
Sbjct: 417 --QHDYLNTIETSSQTLLILINDILDISKIESGNLSLHPHSTDLREIIFDTVSIIISKAN 474

Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVI 738
           EK + +  +   ++P  +L D   ++QI +N+ SNA+ FTP G  Q+ +  T   N  V 
Sbjct: 475 EKHLNLIINIPPDLPSSLLLDDHRLRQILMNLASNAVKFTPKGHVQLDVEFTKKENNTVE 534

Query: 739 --LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
             + V D+GVG+   +L    +PF Q  +S   +  GTGLGL ++K +VD   G+F + S
Sbjct: 535 LTISVSDSGVGIEQNKLNSIFEPFVQEDSSITRQFGGTGLGLAISKQLVDLMDGEFTVKS 594

Query: 797 TPAKGTLIEIIF 808
           T  +G+      
Sbjct: 595 TKGEGSTFSFSL 606


>gi|161367569|ref|NP_288798.2| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli O157:H7 str. EDL933]
 gi|162139775|ref|NP_311134.2| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli O157:H7 str. Sakai]
 gi|168749626|ref|ZP_02774648.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4113]
 gi|168754970|ref|ZP_02779977.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4401]
 gi|168767843|ref|ZP_02792850.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4486]
 gi|168773059|ref|ZP_02798066.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4196]
 gi|168780072|ref|ZP_02805079.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4076]
 gi|168787129|ref|ZP_02812136.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC869]
 gi|168798388|ref|ZP_02823395.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC508]
 gi|195935599|ref|ZP_03080981.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli O157:H7 str. EC4024]
 gi|208807530|ref|ZP_03249867.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4206]
 gi|208813546|ref|ZP_03254875.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4045]
 gi|208818558|ref|ZP_03258878.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4042]
 gi|209396281|ref|YP_002271632.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4115]
 gi|254794118|ref|YP_003078955.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli O157:H7 str. TW14359]
 gi|261223323|ref|ZP_05937604.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli O157:H7 str. FRIK2000]
 gi|261259127|ref|ZP_05951660.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli O157:H7 str. FRIK966]
 gi|291283469|ref|YP_003500287.1| Sensor histidine kinase/response regulator RcsC [Escherichia coli
           O55:H7 str. CB9615]
 gi|187771011|gb|EDU34855.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4196]
 gi|188016099|gb|EDU54221.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4113]
 gi|189002160|gb|EDU71146.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4076]
 gi|189357730|gb|EDU76149.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4401]
 gi|189362893|gb|EDU81312.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4486]
 gi|189372926|gb|EDU91342.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC869]
 gi|189379027|gb|EDU97443.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC508]
 gi|208727331|gb|EDZ76932.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4206]
 gi|208734823|gb|EDZ83510.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4045]
 gi|208738681|gb|EDZ86363.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4042]
 gi|209157681|gb|ACI35114.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4115]
 gi|254593518|gb|ACT72879.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli O157:H7 str. TW14359]
 gi|290763342|gb|ADD57303.1| Sensor histidine kinase/response regulator RcsC [Escherichia coli
           O55:H7 str. CB9615]
 gi|320192155|gb|EFW66800.1| Two-component sensor protein RcsC [Escherichia coli O157:H7 str.
           EC1212]
 gi|320641047|gb|EFX10526.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli O157:H7 str. G5101]
 gi|320657656|gb|EFX25454.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320663112|gb|EFX30425.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli O55:H7 str. USDA 5905]
 gi|320668012|gb|EFX34915.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli O157:H7 str. LSU-61]
 gi|326339572|gb|EGD63383.1| Two-component sensor protein RcsC [Escherichia coli O157:H7 str.
           1125]
 gi|326344033|gb|EGD67794.1| Two-component sensor protein RcsC [Escherichia coli O157:H7 str.
           1044]
          Length = 949

 Score =  303 bits (776), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 99/495 (20%), Positives = 186/495 (37%), Gaps = 41/495 (8%)

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
             P+   +             + LT  +S    +                    + ++L 
Sbjct: 239 TLPMGVTILDENGHT-----LISLTGPESKIKADPRWMQERSWFGY----TEGFRELVLK 289

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV---DTRINK 444
           ++      +      +    E    +              +       E         + 
Sbjct: 290 KNLPPSSLSIVYSVPVDKVLERIRMLILNAILLNVLAGAALFTLARMYERRIFIPAESDA 349

Query: 445 RKMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            ++E        I+ +   GI I+   +G+ + +N            +  ++        
Sbjct: 350 LRLEEHEQFNRKIVASAPVGICILRTADGVNILSNELAHTYLNMLTHEDRQR-------- 401

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                    LT+I+       ++      T     L +  +  +    +     + D+S 
Sbjct: 402 ---------LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSS 448

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + +  L    + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R 
Sbjct: 449 RVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR- 506

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
                 ++ S +L+L I++D+LD SKIES ++ +     S  E ++   +        K+
Sbjct: 507 --LVTAMNNSSSLLLKIISDILDFSKIESEQLMIEPREFSPREVMNHITANYLPLVVRKQ 564

Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           + +      ++P  +  D   ++Q+  N+LSNAI FT +G  I++       + + +RVR
Sbjct: 565 LGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG-CIVLHVR-ADGDYLSIRVR 622

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTGVG+   E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+
Sbjct: 623 DTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGS 682

Query: 803 LIEIIFPLYDTSHPH 817
              +  PLY   +P 
Sbjct: 683 QFTVRIPLYGAQYPQ 697


>gi|22651420|gb|AAL13332.1| bZIP histidine kinase [Pseudomonas mendocina]
          Length = 973

 Score =  303 bits (776), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 94/384 (24%), Positives = 170/384 (44%), Gaps = 18/384 (4%)

Query: 442 INKRKMEIEVMQL-CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT-- 498
             K   E++  +L   I +   + + +++ +G +L  N+A     G  +E+I  KPF   
Sbjct: 23  KEKASAELKREELARIIFDGLYEFVGLLDAQGNVLEVNQAALNGAGVTLEEIRGKPFWKA 82

Query: 499 -VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT 557
             +            L E  S       +   LG +   +++++   +  +       + 
Sbjct: 83  RWWQISKESVANQKRLVEAASSGEFVRCDIEILGKSGGREVIAVDFSLLPIRDEQENIVF 142

Query: 558 M----HDISEWKQEKNKLSHAKKIAEKE-------SSHKSDFLARVSHEIRTPLTAIIGF 606
           +     +I++ K+ +  L+      E+         + KSDF A+VSHE+RTPL+ I+G 
Sbjct: 143 LLAEGRNITDKKKAEAMLALKNHELEQLVERIRKLDNAKSDFFAKVSHELRTPLSLILGP 202

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
            E I     G  G+P + ++   I R+   +L  VN LLD++K+++ +M L +    L +
Sbjct: 203 LETIMEAESGR-GSPYWKKF-EVIQRNAMTLLKQVNTLLDLAKMDAQQMGLSYRRADLSQ 260

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726
                 S     A +K I +      ++     D    ++I LN+LSNA  FTP GG I 
Sbjct: 261 LTRVISSNFDGIAQQKSITLDAELPPHLIA-EVDCEKYERIILNLLSNAFKFTPDGGLIR 319

Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
              + +     ++ V D+G G+     ++  + F Q+    Q   +GTGLGL + K  V+
Sbjct: 320 CHLSLSQPAHALITVSDSGPGIPQNLRKEIFERFHQLNQEGQQANQGTGLGLSIVKEFVE 379

Query: 787 ANMGKFYIFSTPAKGTLIEIIFPL 810
            + G   +   P  G L ++  PL
Sbjct: 380 LHHGTISVSDAPGGGALFQVKLPL 403



 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 81/468 (17%), Positives = 169/468 (36%), Gaps = 32/468 (6%)

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
               +  ++ + K  +   +K +     D      SA     + +   S+ +      K 
Sbjct: 520 EFAHIPIMVLSAKPDEKLRVKLLSESVQDYLLKPFSAHELRARVSNLISMKIAGDALRKE 579

Query: 422 NQFPENMPQNGIEPEDVDTRINKR---KMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
                N                ++    +     +  ++ E ++ GI + + E  IL+ N
Sbjct: 580 LSDQSNDIALLTHRLIKSRHRLQQSNIALTASEARWKAVYENSAAGIVLTDTENRILNAN 639

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
            A  ++ GY  +D+ +         N  + M   L  +L     +          K    
Sbjct: 640 PAFQRITGYTEKDLAQLSMEQLTPPNERTQMKQRLARLLQSGGAE-YSVECSYLCKNGST 698

Query: 539 LSLRIIIK----KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH--KSDFLARV 592
           +     +     ++         + DI+E KQ +  L+  ++   + S      +F A +
Sbjct: 699 IWANASVSLMSPRVDEPQVILQIIDDITEKKQAQETLNQLQQELVQVSRSATMGEFAAYI 758

Query: 593 SHEIRTPLTAIIGFSE----VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
           +HEI  PL+AI+  +      I N+   P       E    I R  +   DI+  +    
Sbjct: 759 AHEINQPLSAIMTNANAGTRWIGNE---PPNIMEAKEALARIIRDSDRAADIIRMVRSFL 815

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIA 708
           K    +     +P+ L   V++   +++  +    + +     + +P I+ D   ++Q+ 
Sbjct: 816 K----RQGPVLKPIDLKALVADTTLILKAPSQSNGVSLNVIAGDTLPAIMGDAVQIQQLV 871

Query: 709 LNILSNAIHFTPSGGQIIISTTHT-----SNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
           +N+  N+I      G        +     SN+ +I+ V+DTG G+   ++ +    F   
Sbjct: 872 INLAMNSIEAMSQVGCETRQLALSFSSNASNDALIICVKDTGPGIPEDQIGQLFNAFYTT 931

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
                   EG G+GL +   + + + GK +  S PA G    +  P+ 
Sbjct: 932 KK------EGLGMGLAICLTIAEVHNGKIWAESPPAGGACFFVSIPVS 973



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/245 (6%), Positives = 54/245 (22%), Gaps = 15/245 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNT-WYGK 146
            D    +   +    +  G     +  + +  ++           +  LL+     +  +
Sbjct: 629 TDTENRILNANPAFQRITGYTEKDLAQLSMEQLTPPNERTQMKQRLARLLQSGGAEYSVE 688

Query: 147 TTLWPIEGTNLYVPIDLAA-LPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
            +     G+ ++    ++   P     +         I+ +     + +   + L++   
Sbjct: 689 CSYLCKNGSTIWANASVSLMSPRVDEPQ--------VILQIIDDITEKKQAQETLNQLQQ 740

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKN----KVSSLTEYYAHKDDVLKTEKYPL 261
            L ++ +  +  E   Y       P   +        +          +           
Sbjct: 741 ELVQVSRSATMGEFAAYIAHEINQPLSAIMTNANAGTRWIGNEPPNIMEAKEALARIIRD 800

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
                  +     F                + + +                   D    +
Sbjct: 801 SDRAADIIRMVRSFLKRQGPVLKPIDLKALVADTTLILKAPSQSNGVSLNVIAGDTLPAI 860

Query: 322 TPETV 326
             + V
Sbjct: 861 MGDAV 865



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/218 (11%), Positives = 59/218 (27%), Gaps = 11/218 (5%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMR-----LCDVSDILHIDPNNHIGDLLKR 139
           F   +DA G + E+++      G    ++ G          +S     +    +      
Sbjct: 46  FVGLLDAQGNVLEVNQAALNGAGVTLEEIRGKPFWKARWWQISKESVANQKRLVEAA-SS 104

Query: 140 QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199
                    +    G    + +D + LPI             G            A+   
Sbjct: 105 GEFVRCDIEILGKSGGREVIAVDFSLLPIRDEQENIVFLLAEG--RNITDKKKAEAM--- 159

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
           L  K   L ++ +    ++  K D F++ S      +   +  L      +         
Sbjct: 160 LALKNHELEQLVERIRKLDNAKSDFFAKVSHELRTPLSLILGPLETIMEAESGRGSPYWK 219

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297
                + +++   +  +T+        Q  G     + 
Sbjct: 220 KFEVIQRNAMTLLKQVNTLLDLAKMDAQQMGLSYRRAD 257


>gi|313674161|ref|YP_004052157.1| pas/pac sensor signal transduction histidine kinase [Marivirga
           tractuosa DSM 4126]
 gi|312940859|gb|ADR20049.1| PAS/PAC sensor signal transduction histidine kinase [Marivirga
           tractuosa DSM 4126]
          Length = 856

 Score =  303 bits (776), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 89/529 (16%), Positives = 176/529 (33%), Gaps = 42/529 (7%)

Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFL 349
            L              +        +E        ++     F+      N  Y N S L
Sbjct: 358 PLTEQDLMISTVTDVTDRVGNRKVLEETLKEKENILESISDAFYALDKDYNFTYVNNSAL 417

Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ-WNRE 408
                   D I    G +   + P+L  +     +                     W  E
Sbjct: 418 KTMGKDRNDLI----GKNAFEEFPQLKKSIFKDYLEEVNRTGKPAQFEFYYQFYDLWFDE 473

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468
           +               P     +    +    +I  + +E    +   IL++ SD    +
Sbjct: 474 SIY-------------PSEHGFSVFYKDITKKKIIDKALEEAYEKESEILDSISDAFVAV 520

Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528
           ++       N+   KL     E+ L K           ++      + L  +  +T +  
Sbjct: 521 DQNLNFTYFNKKAEKLLNITQEEALGKNQWDLFNYAKGTIAEEEYNKALKNNETRTFDFY 580

Query: 529 TLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS-------EWKQEKNKLSHAKKIAEKE 581
                K          I+  P     S+   DI+       E ++   +L       E+ 
Sbjct: 581 DELLDK-------WFNIRSYPSKRGLSIYFRDITLEKKQQEELEKLNQELQDYTHKLEQS 633

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
           +     F    SH+++ PL  +  F   ++ +    L + +   Y N+       +  I+
Sbjct: 634 NQELEQFAYIASHDLQEPLRMVSSFITQLQKKYENQL-DDKAQTYINFAVDGAQRMRQII 692

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701
            DLL+ S+  +G   +  + + L+  ++E +SL+    N+K I +       +P I    
Sbjct: 693 IDLLEYSR--AGTQKVELQKLDLNNEIAEVLSLLHSSINKKNIELEID---ELPEIDYSK 747

Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTS-NEEVILRVRDTGVGMTNYELEKAMKPF 760
            +++Q+  N++ NAI ++  G    I        +    ++ D G+G+     EK    F
Sbjct: 748 TAIRQLFHNLIGNAIKYSKKGEGRKIEIRFKEFKKHYQFKISDNGIGIDPKYHEKIFIIF 807

Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            ++ +  +    GTGLGL + K +V+   G  ++ S   KG+      P
Sbjct: 808 QRLHS--KSEYSGTGLGLAICKKIVEKYGGNIWVESQFGKGSNFYFTVP 854



 Score =  120 bits (301), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 92/707 (13%), Positives = 193/707 (27%), Gaps = 96/707 (13%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG-KT 147
           ID  GY   +S    K  G    ++ G    D       +   +I   +K        + 
Sbjct: 23  IDKKGYFLSVSHACKKIWGYEPQELEGKLFLDFVAPQDFNKTANIQQEIKSGKEVAFFEN 82

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                +G    VPI  +A   Y + +E      + +   +    +  + G+++ K    L
Sbjct: 83  HFVHKKG--FSVPIVWSAK--YDKKKELL----YCVAKESTSIKNKESEGEKILKSSHAL 134

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY--PLLTSE 265
               +       + Y++ +      +  + +    LT         L   +Y        
Sbjct: 135 INGTQNLIYSIDKDYNLLASNQAMKNRILDDTSFDLTVGQNILQIPLLPAEYIDKWKLLF 194

Query: 266 ESSLPEQEDFHTIN------LNQYTKKQYFGTLQNNSKESF---EYLSHRNHPSLSAYFD 316
           +     +E    I       +           +  N                  +     
Sbjct: 195 DECFKGKEISIEIPPSEADYVKPAWIHANLTPIYENEVVIGLVCHSTDITEKKEIELELQ 254

Query: 317 EGENLTPETVDKCPIPFFVY--SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
           +  +L    +   P+   V   S G     N  F     +   +  +++   + +     
Sbjct: 255 KQNDLVQNILQHIPMGVAVNENSTGKQILINQQFSKAYGWPENELTDVSTFFNKIYPEEN 314

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
                  + +                  I   + N+  +            E        
Sbjct: 315 YRKEIIAR-ITADIESGNMSRMQWSEIKITTKKGNTKYVDAKNIPLT----EQDLMISTV 369

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
            +  D   N++ +E  + +  +ILE+ SD    ++++      N +  K  G    D++ 
Sbjct: 370 TDVTDRVGNRKVLEETLKEKENILESISDAFYALDKDYNFTYVNNSALKTMGKDRNDLIG 429

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554
           K       Q   S+   YL E+         E          +   L       P    +
Sbjct: 430 KNAFEEFPQLKKSIFKDYLEEVNRTGKPAQFEFYY-------QFYDLWFDESIYPSEHGF 482

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD-FLA------------------RVSHE 595
           S+   DI++ K     L  A +   +     SD F+A                   ++ E
Sbjct: 483 SVFYKDITKKKIIDKALEEAYEKESEILDSISDAFVAVDQNLNFTYFNKKAEKLLNITQE 542

Query: 596 --------------------------IRTPLTAIIGFSEVIKNQRFGPLGNPRYIE---Y 626
                                     ++   T    F + + ++ F     P       Y
Sbjct: 543 EALGKNQWDLFNYAKGTIAEEEYNKALKNNETRTFDFYDELLDKWFNIRSYPSKRGLSIY 602

Query: 627 ANYI---DRSGNLVLDIVNDLLDIS-KIESGKMNLH----FEPVSLDEAVSEAISLVQLY 678
              I    +    +  +  +L D + K+E     L          L E +    S +   
Sbjct: 603 FRDITLEKKQQEELEKLNQELQDYTHKLEQSNQELEQFAYIASHDLQEPLRMVSSFITQL 662

Query: 679 ANEKRILIRTSFANNIPRILAD-LRSVKQIALNILSNAIHFTPSGGQ 724
             +    +    A        D  + ++QI +++L     ++ +G Q
Sbjct: 663 QKKYENQLD-DKAQTYINFAVDGAQRMRQIIIDLLE----YSRAGTQ 704



 Score = 48.9 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 52/139 (37%), Gaps = 2/139 (1%)

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
           L   +E + D +  I+++G  LS + A  K++GY  +++  K F  F+     +   +  
Sbjct: 9   LDKFMELSLDILCTIDKKGYFLSVSHACKKIWGYEPQELEGKLFLDFVAPQDFNKTANIQ 68

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH 573
            EI S       E   +   K+   + +    K             + +  K ++++   
Sbjct: 69  QEIKSGKEVAFFENHFV--HKKGFSVPIVWSAKYDKKKELLYCVAKESTSIKNKESEGEK 126

Query: 574 AKKIAEKESSHKSDFLARV 592
             K +    +   + +  +
Sbjct: 127 ILKSSHALINGTQNLIYSI 145


>gi|158523280|ref|YP_001531150.1| histidine kinase [Desulfococcus oleovorans Hxd3]
 gi|158512106|gb|ABW69073.1| histidine kinase [Desulfococcus oleovorans Hxd3]
          Length = 565

 Score =  303 bits (776), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 79/247 (31%), Positives = 134/247 (54%), Gaps = 3/247 (1%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
             +    +L+ A K A      KS FLA +SHE+RTPL +IIGF+ ++  +  GPL N  
Sbjct: 315 RIRSRTAELADAMKKARAADHLKSAFLATMSHELRTPLNSIIGFTGMLLQELPGPL-NEE 373

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             +    +  S   +L ++ND+LDISKIE+G+++L      L  ++ +  +LV   A + 
Sbjct: 374 QKKQMGMVQTSARHLLALINDVLDISKIEAGQLSLAPVTFDLRSSIEKTAALVAPLAEKN 433

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
            I ++     ++  +  D R ++Q+ LN+L+NA+ FT +G  + I+   T   + ++ V 
Sbjct: 434 EIDLKVEIGKDVGDMTTDQRRLEQVVLNLLNNAVKFTETGS-VSINCR-TDTGQYVISVA 491

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG+G+   ++ +  +PF Q+      R EGTGLGL ++K +V    G   + S P KG+
Sbjct: 492 DTGIGIQPEDVAELFQPFHQVDTGLSRRHEGTGLGLSISKRLVAMMGGAIEVQSEPGKGS 551

Query: 803 LIEIIFP 809
              +  P
Sbjct: 552 TFTVRLP 558


>gi|310824380|ref|YP_003956738.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309397452|gb|ADO74911.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 683

 Score =  303 bits (776), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 97/371 (26%), Positives = 169/371 (45%), Gaps = 17/371 (4%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR-KPFTVFLEQ 503
              E    +L    ++   G      +G ++  N+   K  GY  E++L  K F   L  
Sbjct: 14  ALAEESAEEL---YDSAPCGYISTLPDGTLVRVNQTFLKWMGYSREELLGGKRFQELLTG 70

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH---- 559
                   +   +L +      E       K+ + + + +   +   +S  +L       
Sbjct: 71  GGRIFHETHCVPLLQMQGA-VNELSFDLVRKDGQRVPVLLNTVQKKDASGKTLFHRTTLF 129

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           DI++ +  + +L  A+K AE+ +  K+DFL+ +SHEIRTP+ AIIG S ++      PL 
Sbjct: 130 DITDRRNYERELVLARKRAEEATRAKADFLSMMSHEIRTPMNAIIGLSNLLGQATLPPL- 188

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
              Y EYA  +  S   +L ++N +LD +K+E+GK+ L      L + +    S + + A
Sbjct: 189 ---YQEYARILQSSSENLLVLLNSILDFNKMEAGKLMLEERRFDLRQLLHGLCSTLSVKA 245

Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEV 737
            EK++ IR  F   +P  +L D   + Q+  N+L NAI FT  G   + +   H   E V
Sbjct: 246 EEKKLSIRVEFDPEVPNALLGDPVKLGQVLTNLLGNAIKFTEQGAVTLAVRRLHGDAEGV 305

Query: 738 I--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
               +V DTG+G+   +L +  + F Q       +  G+GLGL + + ++  +  K  + 
Sbjct: 306 FLGFKVSDTGMGIPQDQLTQIFEAFTQASYDITWKHGGSGLGLAICQKLLALHGSKMRVE 365

Query: 796 STPAKGTLIEI 806
           S P +G+    
Sbjct: 366 SVPGEGSSFAF 376



 Score = 45.4 bits (106), Expect = 0.039,   Method: Composition-based stats.
 Identities = 15/137 (10%), Positives = 33/137 (24%), Gaps = 6/137 (4%)

Query: 318 GENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
            E    E  D  P         G L   N +FL    Y   + +                
Sbjct: 16  AEESAEELYDSAPCGYISTLPDGTLVRVNQTFLKWMGYSREELLGGK-----RFQELLTG 70

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
                         +   A +     +       + +     +K +   + +       +
Sbjct: 71  GGRIFHETHCVPLLQMQGAVNELSFDLVRKDGQRVPVLLNTVQKKDASGKTLFHRTTLFD 130

Query: 437 DVDTRINKRKMEIEVMQ 453
             D R  +R++ +   +
Sbjct: 131 ITDRRNYERELVLARKR 147



 Score = 38.5 bits (88), Expect = 4.7,   Method: Composition-based stats.
 Identities = 18/140 (12%), Positives = 39/140 (27%), Gaps = 5/140 (3%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMI-GMRLCDVSDILH-IDPNNHIGDLLKRQNTWYGKTT 148
             G L  +++   K +G    +++ G R  ++      I    H   LL+ Q      + 
Sbjct: 36  PDGTLVRVNQTFLKWMGYSREELLGGKRFQELLTGGGRIFHETHCVPLLQMQGAVNELSF 95

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
              +      VP+ L  +     + +    R    +       +         K+     
Sbjct: 96  DL-VRKDGQRVPVLLNTVQKKDASGKTLFHRT--TLFDITDRRNYERELVLARKRAEEAT 152

Query: 209 EIKKGHSSVEKEKYDIFSQQ 228
             K    S+   +       
Sbjct: 153 RAKADFLSMMSHEIRTPMNA 172


>gi|226198683|ref|ZP_03794247.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei Pakistan 9]
 gi|225929123|gb|EEH25146.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei Pakistan 9]
          Length = 1032

 Score =  303 bits (776), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 127/677 (18%), Positives = 234/677 (34%), Gaps = 59/677 (8%)

Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH 233
           +F   +G+ ++H  +      A+G     +          + ++ + +  +   QSP P 
Sbjct: 129 QFDAHQGYAVLHTPQGAPAALAVGIPAPGRS---ASAFAPYLALLETQLLMGDGQSPLPD 185

Query: 234 LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293
            R++    S    Y       + +         S+                 +     + 
Sbjct: 186 DRVEGYSFSPDGTYLSLLWSREDQAPEAFIESHSASGL---IGDAMRGIRYLRDASTIVP 242

Query: 294 NNSKESFEYLSHRNHP--------SLSAYFDEGENLTPETVDKCPIPFF----------- 334
             +     +L     P         +    D    L    V   P+  F           
Sbjct: 243 LRADRRTVWLPPHPDPLTGKPMIRIVQPAIDATGKLFAIYVRSLPLDMFYSNLNDAPAGS 302

Query: 335 ----VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390
               V   GN+   + +        +   + I       L           +  M   SD
Sbjct: 303 TLTIVDRKGNVILGSSNQHGGGGGATASALGI-----RSLGDGFGGLVERYQDGMFVTSD 357

Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR------INK 444
           +        +H   W    + A+              +    +     D +         
Sbjct: 358 QLPGTDWVLVHAYSWK-TIAAALALRFSLVTGLVAGIIVMLWLFAIQFDRKGLIPNYRRA 416

Query: 445 RKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
           +++    +   +IL     G+ +++  +G +L  N A+ +L          +P  + L +
Sbjct: 417 QRLLESEVLNRTILRTAPVGLGLLSAQDGSVLLQNNAMLEL----SARTSGEPLPIRLWE 472

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                +                +            L   ++  +   ++    T+ DIS 
Sbjct: 473 AYRHAVG---RSSDEDGALLQHDLAIEREGANPVYLQANVVAARYRGANVLLCTLLDISL 529

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            K+ + KL  A+  A++ +  KS FLA +SHEIRTPL AIIG  E+++        + + 
Sbjct: 530 RKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPL----SEQQ 585

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            E  + ++   N +L I+ND+LD+SK+ESG+M L   P  +   + E +      A  K 
Sbjct: 586 SERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAYAPLAESKG 645

Query: 684 ILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIST----THTSNEEVI 738
           + + +S    + R    D   ++Q+  N++ NAI FT  G  I I             + 
Sbjct: 646 LALLSSIGEGVARHYTGDPTRIRQVLSNLIGNAIKFTERG-HISIDVHRAKAARDGSAIE 704

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           + V DTG+G+    +      + Q   S   R  G+GLGLPL + +V    G   I S P
Sbjct: 705 IWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLP 764

Query: 799 AKGTLIEIIFPLYDTSH 815
             GT + +  PL +  H
Sbjct: 765 DFGTTVTVALPLREARH 781


>gi|149277531|ref|ZP_01883672.1| PAS [Pedobacter sp. BAL39]
 gi|149231764|gb|EDM37142.1| PAS [Pedobacter sp. BAL39]
          Length = 496

 Score =  303 bits (776), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 78/484 (16%), Positives = 174/484 (35%), Gaps = 27/484 (5%)

Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
             +  +GN+   N     +  Y + + I     +        L DN   K +     +  
Sbjct: 25  VLLDENGNIENWNKGAQKIKGYTAAEIIGKNFSI--FYTEADLIDNLPTKLINEAARNEK 82

Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
               +     I+ +               +   + +    I  +    +  +  +     
Sbjct: 83  ---VTNEGWRIRKDGTRFWGSVL--ITAIHNEGQVIGFTKIIRDMTAIKETEDALRKSED 137

Query: 453 QLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS--VM 509
           +   ++    D  I +++ EG I + N+   ++ GY   +I+ + F +F         V 
Sbjct: 138 RYHKMISEVVDYAIVLLDAEGNIENWNKGAERIKGYLPAEIIGRNFRLFYPPEDRKNKVP 197

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWK 565
           +  +         Q          K+  L    + I  L               D++E +
Sbjct: 198 DQIIATARDQGRAQQDGWRVR---KDGTLFWGSVTITALYDDEGIVTGFSKVTRDLTEKR 254

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + +           + +S    F    SH+++ PL  I  F+E++K Q +  L +     
Sbjct: 255 KSEKAHEEHMLDLSRRNSELEQFTYIASHDLQEPLRTISSFNELLKEQYYEQLDDD-GRM 313

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           + + I++S + + ++++ LLD ++I + K       V+ +  V +    +    +E    
Sbjct: 314 FTDMIEQSADRMRNLIHGLLDYTRIGTRK---SLTEVNCNAVVQDIEKDLYKLISETNTT 370

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN-EEVILRVRDT 744
           I    ++ +P +L     + Q+  N++SNAI +       +I      + E     + D 
Sbjct: 371 I---ISHPLPVLLGLKMELIQLFQNLISNAIKYRKKNLAPVIEIRAEEHLEHWQFSLSDN 427

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+GM    + K    F ++ N  +   +G G+GL   K + + + G  ++ S   +G+  
Sbjct: 428 GIGMDQRYIHKIFMIFQRLHN--RDEYKGNGIGLANCKKIAELHKGDIWVHSVLGEGSTF 485

Query: 805 EIIF 808
               
Sbjct: 486 HFTI 489



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/136 (15%), Positives = 51/136 (37%), Gaps = 5/136 (3%)

Query: 450 EVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
              +L  ++E   D  I +++  G I + N+   K+ GY   +I+ K F++F  +     
Sbjct: 8   SHQRLLKMVEEIEDYAIVLLDENGNIENWNKGAQKIKGYTAAEIIGKNFSIFYTEADLID 67

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWK 565
                  I      + +        K+       ++I  +        ++  + D++  K
Sbjct: 68  NLPT-KLINEAARNEKVTNEGWRIRKDGTRFWGSVLITAIHNEGQVIGFTKIIRDMTAIK 126

Query: 566 QEKNKLSHAKKIAEKE 581
           + ++ L  ++    K 
Sbjct: 127 ETEDALRKSEDRYHKM 142



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 22/169 (13%), Positives = 46/169 (27%), Gaps = 13/169 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID---PNNHIGDLLKRQNTWYG 145
           +DA G ++  ++   +  G    ++IG                P+  I     +      
Sbjct: 154 LDAEGNIENWNKGAERIKGYLPAEIIGRNFRLFYPPEDRKNKVPDQIIATARDQGRAQQD 213

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
                  +GT  +  + + AL  Y      +GF    +              +      S
Sbjct: 214 G-WRVRKDGTLFWGSVTITAL--YDDEGIVTGFSK--VTRDLTEKRKSEKAHEEHMLDLS 268

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254
             +   +  + +          Q P   +   N++     Y    DD  
Sbjct: 269 RRNSELEQFTYIASHD-----LQEPLRTISSFNELLKEQYYEQLDDDGR 312



 Score = 58.1 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 23/239 (9%), Positives = 71/239 (29%), Gaps = 15/239 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI---DPNNHIGDLLKRQNTWYG 145
           +D +G ++  ++   K  G  A ++IG           +    P   I +   R      
Sbjct: 27  LDENGNIENWNKGAQKIKGYTAAEIIGKNFSIFYTEADLIDNLPTKLINEA-ARNEKVTN 85

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +      +GT  +  + + A+       +  GF    I+       +     ++ + ++ 
Sbjct: 86  EGWRIRKDGTRFWGSVLITAI---HNEGQVIGFTK--IIRDMTAIKETEDALRKSEDRYH 140

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHL---RMKNKVSS--LTEYYAHKDDVLKTEKYP 260
            +      ++ V  +        +         +  ++       +Y  +D   K     
Sbjct: 141 KMISEVVDYAIVLLDAEGNIENWNKGAERIKGYLPAEIIGRNFRLFYPPEDRKNKVPDQI 200

Query: 261 LLTSEESSLPEQEDFH-TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
           + T+ +    +Q+ +    +   +        L ++      +       +     ++ 
Sbjct: 201 IATARDQGRAQQDGWRVRKDGTLFWGSVTITALYDDEGIVTGFSKVTRDLTEKRKSEKA 259


>gi|194337195|ref|YP_002018989.1| PAS/PAC sensor hybrid histidine kinase [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194309672|gb|ACF44372.1| PAS/PAC sensor hybrid histidine kinase [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 1148

 Score =  303 bits (776), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 110/762 (14%), Positives = 230/762 (30%), Gaps = 84/762 (11%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
           TW  D        S+E+    G     +       ++ I+  +        +   N    
Sbjct: 282 TWEHDITTNTNIWSDEIWSLYGLKPNSVELNYESWINTIIPEERERVRQATIDAVNKGCE 341

Query: 146 KTTLWPIEG-TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
               W I G       +     P+     +   + G  I              K  + +F
Sbjct: 342 FICSWRIPGADGAVRWLMSKGTPVKDSEGKIVRYAGIMI--DITDQKQRDDALKESENRF 399

Query: 205 SHLHE-IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
             + E        +E +   I        +            +Y    + LK      +T
Sbjct: 400 RMVFEKHSSIMLVIEPDTGRIIDVNQAAVN------------FYKWPTETLKQMTIRQIT 447

Query: 264 SEESSLPEQEDFHTINLNQYTKKQY--FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
           +E     + +     + +    + Y                        +       E +
Sbjct: 448 TEPFESRQNQTHQIADGSIRDVEVYSCLIPFGEKEILYAIMNDITERKKVEQALAVSEKM 507

Query: 322 TPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGG----------LSTLL 370
                ++     F+    G   Y +P+   ++ YK+ + I                 +  
Sbjct: 508 FRSITEQISEIVFITDQSGITTYVSPAVETISGYKADEVIGHRFVEFMAEEDIERAISSF 567

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
               +   + +      + DR+   A   +   +                       +  
Sbjct: 568 QNGLMMQVDEVLEFRYRKKDRSLFYAEIHVQFYKHEG-------------------FIGY 608

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN--REGIILS--TNRAVSKLFG 486
            G+  +  + +  ++++      L SI    +  I +++   +G       N    ++ G
Sbjct: 609 IGLIRDITERKKYEQELIESRQLLKSIYNQVNYAIFVVDILTDGTYRYNSINPLSEQISG 668

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
               ++  K    F        +  +  + +  +     E+  +   K     ++ +   
Sbjct: 669 VTSNELAGKTPEQFFPPPIAKSVTQHYNDCIRENKIIHYEESMMFHGKSSLWETV-LNPV 727

Query: 547 KLPFSS--CYSLTMHDISEWKQEKNKLSH--AKKIAEKESSHKSDFLARVSHEIRTPLTA 602
           +    +      T  DI+E +Q + + +    +    ++          ++H+    LT 
Sbjct: 728 RNENGAIFRIIGTSVDITERRQIEEQRAELSVQLQQSQKMEMVGRLAGGIAHDFNNMLTV 787

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           I+G SE+        L    Y ++   I ++     ++   LL  ++    K  +  + V
Sbjct: 788 ILGHSEMAMETSDPTLKT--YAQFVA-IHQAATHSANLTRQLLAFAR----KQVVSPKIV 840

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
            L+ A++E + +++     + I++          I  D   + QI +N+  NA       
Sbjct: 841 ELNTAITEMLPMLRRLI-GENIMLTWIPECKNCYIKIDPSQIDQILVNLCINARDAITGN 899

Query: 723 GQIII---------------STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
           G+I I                T   S + V L V D G G+   +L+   +PF     S 
Sbjct: 900 GRITIDNRCVTLPEIPCETDKTACHSADYVSLSVHDDGCGIEPNDLQHIFEPFFTTKES- 958

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
              G+GTGLGL     +V  N G     S   KGT I I  P
Sbjct: 959 ---GKGTGLGLSTVYGIVKQNNGNIECRSEQGKGTTITIQLP 997



 Score =  133 bits (335), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 54/478 (11%), Positives = 135/478 (28%), Gaps = 44/478 (9%)

Query: 116 MRLCDVSDILHIDPN-NHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNRE 174
                V      D   + + +  K       +  +   +G+     +     P++  N  
Sbjct: 186 HLWASVIHPEDRDSVISAVTEAAKCDAELNIEYRVCYPDGS--MHWLMSRGKPLHDLNGR 243

Query: 175 FSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL 234
              + G  I+ + +       L    ++    L     G    +                
Sbjct: 244 TVRYIG-TIIDITKRKEFQERLLAANERMHFILAATSSGTWEHDITTNTNIWSDEIWSLY 302

Query: 235 RMKNKVSSLTEYYA-----HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYF 289
            +K     L           ++     +      ++             +          
Sbjct: 303 GLKPNSVELNYESWINTIIPEERERVRQATIDAVNKGCEFICSWRIPGADGAVRWLMSKG 362

Query: 290 GTLQNNSKESFEYLSHRNHPSLSAYFD----EGENLTPETVDKCPIPFFVY--SHGNLFY 343
             ++++  +   Y       +     D    E EN      +K      V     G +  
Sbjct: 363 TPVKDSEGKIVRYAGIMIDITDQKQRDDALKESENRFRMVFEKHSSIMLVIEPDTGRIID 422

Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403
            N + +   K+ + + ++    +  +   P  S  N    +    +D +          I
Sbjct: 423 VNQAAVNFYKWPT-ETLKQM-TIRQITTEPFESRQNQTHQI----ADGSIRDVEVYSCLI 476

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
            +  +  L                     I  +  + +  ++ + +      SI E  S+
Sbjct: 477 PFGEKEILY-------------------AIMNDITERKKVEQALAVSEKMFRSITEQISE 517

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
            + I ++ GI    + AV  + GY  ++++   F  F+ +             L + + +
Sbjct: 518 IVFITDQSGITTYVSPAVETISGYKADEVIGHRFVEFMAEEDIERAISSFQNGLMMQVDE 577

Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAE 579
            L        K+  L    I ++         Y   + DI+E K+ + +L  ++++ +
Sbjct: 578 VL--EFRYRKKDRSLFYAEIHVQFYKHEGFIGYIGLIRDITERKKYEQELIESRQLLK 633



 Score =  120 bits (302), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 64/587 (10%), Positives = 161/587 (27%), Gaps = 64/587 (10%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID +G +   +          A + IG  + D+   +   P        K          
Sbjct: 31  IDPNGIILTANTLFAARFSISAEECIGSVVYDLIATILQIPEQAFHYKEKIGEVLRLGKR 90

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           +   +G            P+ S     +  R F  +                  KF+   
Sbjct: 91  MVFEDGKGNLNW-KFTINPVLSPEGTIT--RLFITIADISRQKQKETRFNECKVKFNQAL 147

Query: 209 EIKKGHSSVEK---------EKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
           E  +                ++        P  +    +  +S+         +    + 
Sbjct: 148 EAARAGVWEWDLTTNDNIWSDEIWPLYGLEPTNNNPSFHLWASVIHPEDRDSVISAVTEA 207

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
               +E   L  +      + + +        L + +  +  Y+      +    F E  
Sbjct: 208 AKCDAE---LNIEYRVCYPDGSMHWLMSRGKPLHDLNGRTVRYIGTIIDITKRKEFQERL 264

Query: 320 NLTPE----TVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVD-DIEIAGGLSTLLDAP 373
               E     +       + +    N    +     L   K    ++     ++T++  P
Sbjct: 265 LAANERMHFILAATSSGTWEHDITTNTNIWSDEIWSLYGLKPNSVELNYESWINTII--P 322

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
           +  +      +         I        I         +        +   + +   GI
Sbjct: 323 EERERVRQATIDAVNKGCEFIC----SWRIPGADGAVRWLMSKGTPVKDSEGKIVRYAGI 378

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDI 492
             +  D +     ++    +   + E  S  + +I  + G I+  N+A    + +P E +
Sbjct: 379 MIDITDQKQRDDALKESENRFRMVFEKHSSIMLVIEPDTGRIIDVNQAAVNFYKWPTETL 438

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
            +                    +I +        +    +    + + +   +       
Sbjct: 439 KQMTI----------------RQITTEPFESRQNQTHQIADGSIRDVEVYSCLIPFGEKE 482

Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD--FLARVSHEIRTPLTAIIGFSEVI 610
                M+DI+E K+ +  L+ ++K+    +   S+  F+   S         I  +    
Sbjct: 483 ILYAIMNDITERKKVEQALAVSEKMFRSITEQISEIVFITDQS--------GITTYVSPA 534

Query: 611 KNQRFGPLGNP----RYIEYA--NYIDRSGNL----VLDIVNDLLDI 647
                G   +     R++E+     I+R+ +     ++  V+++L+ 
Sbjct: 535 VETISGYKADEVIGHRFVEFMAEEDIERAISSFQNGLMMQVDEVLEF 581



 Score = 70.8 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 35/300 (11%), Positives = 79/300 (26%), Gaps = 28/300 (9%)

Query: 311 LSAYFDEGENLTPETVDKCPI-PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
                    +     ++  P     +  +G +  AN  F       + + I      S +
Sbjct: 6   SLPESKLANDPVFALLESLPEEALLIDPNGIILTANTLFAARFSISAEECIG-----SVV 60

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
            D          +           +    R+  +  + + +L   F      +       
Sbjct: 61  YDLIATILQIPEQAFHYKEKIGEVLRLGKRM--VFEDGKGNLNWKFTINPVLSPEGTITR 118

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
                 +    +  + +     ++    LEA   G+   +        +  +  L+G   
Sbjct: 119 LFITIADISRQKQKETRFNECKVKFNQALEAARAGVWEWDLTTNDNIWSDEIWPLYGLEP 178

Query: 490 --EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
              +     +   +       +   +TE    D    L         +  +  L    K 
Sbjct: 179 TNNNPSFHLWASVIHPEDRDSVISAVTEAAKCDAE--LNIEYRVCYPDGSMHWLMSRGKP 236

Query: 548 LPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS-----HEIRT 598
           L   +     Y  T+ DI++ K+        ++     +      LA  S     H+I T
Sbjct: 237 LHDLNGRTVRYIGTIIDITKRKE-------FQERLLAANERMHFILAATSSGTWEHDITT 289


>gi|228922347|ref|ZP_04085654.1| hypothetical protein bthur0011_33370 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228837402|gb|EEM82736.1| hypothetical protein bthur0011_33370 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 516

 Score =  303 bits (776), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 97/523 (18%), Positives = 196/523 (37%), Gaps = 39/523 (7%)

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDD 359
            + +                +     +  P     +   G + + NPS   +  Y S++ 
Sbjct: 19  RHPNISRRLRNHIQDRSLTEMYASLFEHNPDSIISLNLEGVILHINPSAERILGYTSLE- 77

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
           +E     S L       + +  + V+    +         + +I       L +      
Sbjct: 78  LEQKNITSIL-------EAHISEQVLQNIKNTEADNQQEYILSIYHKNGFLLDVVTKLVP 130

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
              Q         ++P +   RI +  ++    +L +++ +    +   + EG  L  N 
Sbjct: 131 IFVQNRLTGVYAIMKPLEKSERI-ENMLKESEKRLRTLVNSMPAFVIFKDHEGRWLEAND 189

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMN----HYLTEILSLDLRQTLEKITLGSTKE 535
                F +       K  +  ++ N            + E+     RQ L        ++
Sbjct: 190 YALSCFNFHHVPYHGKKDSELIQYNEAYREAFLHCEEIDELAWQ-QRQILHGEEFIIHRD 248

Query: 536 EKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
           +  L L I    L           +   D++E K+ +  L  ++K+A           A 
Sbjct: 249 DFDLILSISKVPLYHPDGSRKGLIVMGRDVTELKETEKLLRKSEKLAVV-----GQLTAG 303

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           ++HEIR PLT++ GF  ++      P  N     Y + +    + +  I +  + +SK +
Sbjct: 304 IAHEIRNPLTSLKGFLTLLL-----PEINEEQKWYIDVMLSEISQMESITSQFMAMSKPQ 358

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
                L  +  ++   + E ++ +   A    + I     + +  I  D   +KQ+ +NI
Sbjct: 359 ----VLSIQTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYVYDIQCDGNQLKQVFINI 414

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           L NAI   P+GG I I T    +  +++R+ D G G+    + +  +PF        ++ 
Sbjct: 415 LKNAIEAMPNGGNIFIQTKPLEDNFILIRIIDEGCGIPEDRISRLGEPFY------SLKE 468

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           +GTGLGL +   +++ + GK +I S   KGT+++I  PL  + 
Sbjct: 469 KGTGLGLMMCYKIIEEHHGKLHISSELNKGTIVDIKLPLSSSH 511


>gi|186685728|ref|YP_001868924.1| multi-sensor hybrid multi-kinase [Nostoc punctiforme PCC 73102]
 gi|186468180|gb|ACC83981.1| multi-sensor hybrid multi-kinase [Nostoc punctiforme PCC 73102]
          Length = 2370

 Score =  303 bits (776), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 128/775 (16%), Positives = 263/775 (33%), Gaps = 107/775 (13%)

Query: 86   TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR---QNT 142
             W+ D    L +  E++ +  G      +      +   LH D  + +   L R   +  
Sbjct: 1501 VWSWDIANNLFDWDEQVYQLFGLTPETFVATS-ETILARLHPDDRSLLAQSLSRTISEGV 1559

Query: 143  WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
             +        + +++   +       +++  + +   G  +V          A   +L +
Sbjct: 1560 EHDLEYRMIRDDSSIR-YLACRGKAFFNKAGKATHMSG--VVLDITDRKQAEAERIQLIQ 1616

Query: 203  KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
            + +   E +               +Q      ++   ++S   Y +    V         
Sbjct: 1617 EQTARQEAEAD-------------RQRAAFLAQVSATLASSLNYESTLASVA-------- 1655

Query: 263  TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
                           + +  +        LQ+N   +   ++HR+   +   ++  +   
Sbjct: 1656 --------------NLVVPYFADWCSVDLLQDNQSINRVAVAHRDPEKVKLGWELHQRYP 1701

Query: 323  PETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
             +  +  P+    V   G               +  D +   G                 
Sbjct: 1702 RKLDE--PVGVPKVLRTGIPEMVT---------EISDALLAKGIPDAEHLRIIREIGLKS 1750

Query: 382  KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
              ++   +      A +        R +++ ++                   +      +
Sbjct: 1751 CMMLPLMARERIFGAISFFTAESERRYSTVDLSLAEDIAHRAAIAIDNARLYQEAQQAQK 1810

Query: 442  INKRKMEIEVMQLCSILEATSDGI-------AIINREGIILSTNRAVSKLFGYPVEDI-- 492
              +  +E  + +L SI  A S+ +        I+ +    L  N A+  L      ++  
Sbjct: 1811 TAEIALE-RIARLQSITAALSESLTPAQVSEVIVEQSMAALGANSALVALLNENKTELEI 1869

Query: 493  -----LRKPF---TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL------ 538
                   +           ++PS +   +             +I       E        
Sbjct: 1870 VQTVGYNQDLVDAWRHFPIDSPSPLAEAVRTGQPAWAESRQNRIARYPHLAEAYAQYDID 1929

Query: 539  ----LSLRIIIKKLPFSSCYSLTMHDISEWKQE-------------------KNKLSHAK 575
                + L +    +   +     + + SE  +                    + +L+  +
Sbjct: 1930 AWISIPLMVEGSAVGGITLGFAQLQEFSEEDRAFMLAVAQQCAQAIARAHLYEAELTA-R 1988

Query: 576  KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
              AE  +  K +FLA +SHE+RTPL  I+G+++++++++     + R       I+R+  
Sbjct: 1989 NAAESANRIKDEFLAVLSHELRTPLNPILGWTKLMRSRKLDQATSDRA---LETIERNAK 2045

Query: 636  LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695
            L   ++ DLLD+S+I  GK+NL+F P++L   +  AI  V+L A  K I I+T F   + 
Sbjct: 2046 LQTQLIEDLLDVSRILQGKLNLNFGPINLVSVIEAAIETVRLSAQAKSIEIQTIFEFGVG 2105

Query: 696  RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755
             +L D   ++Q+  NILSNAI FTPS GQ+ I        +V + V DTG G+    L  
Sbjct: 2106 SVLGDANRLQQVIWNILSNAIKFTPSEGQVKIKLEQV-GSQVQICVTDTGKGIAPEFLPY 2164

Query: 756  AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFP 809
                F Q   +   +  G GLGL + + +V+ + G     S    +G    +  P
Sbjct: 2165 VFDYFRQADGATTRQFGGLGLGLAIVRHLVELHGGTVQAESLGEEQGATFTVRLP 2219



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 62/165 (37%), Gaps = 9/165 (5%)

Query: 438  VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED--ILRK 495
            ++     + +E    QL   L++   G+   +    +   +  V +LFG   E      +
Sbjct: 1474 LENARLYQGLENSQEQLNLALKSGKIGVWSWDIANNLFDWDEQVYQLFGLTPETFVATSE 1533

Query: 496  PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII--KKLPFSSC 553
                 L  +  S++   L+  +S  +   LE   +      + L+ R      K   ++ 
Sbjct: 1534 TILARLHPDDRSLLAQSLSRTISEGVEHDLEYRMIRDDSSIRYLACRGKAFFNKAGKATH 1593

Query: 554  YSLTMHDISEWKQEKNKL-----SHAKKIAEKESSHKSDFLARVS 593
             S  + DI++ KQ + +          +   +    ++ FLA+VS
Sbjct: 1594 MSGVVLDITDRKQAEAERIQLIQEQTARQEAEADRQRAAFLAQVS 1638


>gi|260171368|ref|ZP_05757780.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|315919679|ref|ZP_07915919.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|313693554|gb|EFS30389.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
          Length = 637

 Score =  303 bits (776), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 115/515 (22%), Positives = 189/515 (36%), Gaps = 27/515 (5%)

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
           S    E        +    I  + Y    G   +++  F      K+   +         
Sbjct: 16  SELIRENSQEILSVLAAHQIALWEYDIITGECSFSDDYF-STLGLKNAGVLFEDIDSFYR 74

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
              P  ++        +  SD        R+  I    +           K +       
Sbjct: 75  FVHPDDTEAYKQAFAEMLSSDSKTS--QIRVRCIGEQGKVVWLEDHFLSYKESCKSHPGK 132

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
                         ++ ++        I+EA  + I I +    I     A   +  +PV
Sbjct: 133 LLAYTVNVTSQCEKEQHIKYLEEYNRKIIEALPEFIFIFDDNFFITDVLMAPGTILLHPV 192

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
           E +               +    + E L     + +E        +  +   +  I    
Sbjct: 193 EVLRGADGRSIYSPEVSDLFICNIRECLQDGQLKEIEYPVEV---DGGVHYFQARIAPFE 249

Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
             +     +HDI +      +L  AK+ AE     KS FLA +SHEIRTPL AI+GFSE+
Sbjct: 250 -GNRVLALIHDIGDRILRSQELIEAKRRAEDADKMKSVFLANMSHEIRTPLNAIVGFSEI 308

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           I        G     EY   I R+ NL+L ++ND+LD+S+IESGK  +HF+ V +   V 
Sbjct: 309 IA----VTEGEEEKREYLEIIQRNSNLLLQLINDILDLSRIESGKSEMHFQQVEIAGLVE 364

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
           E   + QL      + ++            D   V Q+  N LSNAI  T  G  I +  
Sbjct: 365 EVEKVHQLKMKS-NVELKVIRPEGEYWTSTDRNRVMQVLFNFLSNAIKNTEKGS-ITLGL 422

Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
            H     + L V DTG G++  +L +    F ++        +GTGLGL + K++V+   
Sbjct: 423 KHE-GPWLKLYVSDTGCGISKEKLPQIFTRFEKL----NDFVQGTGLGLSICKSIVERLG 477

Query: 790 GKFYIFSTPAKGTLIEIIFP-------LYDTSHPH 817
           G+  + S   +G++  +  P       + +   PH
Sbjct: 478 GRIEVTSELGQGSVFALYLPYQEIPKEVVERRLPH 512


>gi|126455824|ref|YP_001074202.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 1106a]
 gi|242312265|ref|ZP_04811282.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 1106b]
 gi|126229592|gb|ABN93005.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 1106a]
 gi|242135504|gb|EES21907.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 1106b]
          Length = 1032

 Score =  303 bits (776), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 126/677 (18%), Positives = 232/677 (34%), Gaps = 59/677 (8%)

Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH 233
           +F   +G+ ++H  +      A+G     +          + ++ + +  +   QSP P 
Sbjct: 129 QFDAHQGYAVLHTPQGAPAALAVGIPAPGRS---ASAFAPYLALLETQLLMGDGQSPLPD 185

Query: 234 LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293
            R++    S    Y       + +         S+                 +     + 
Sbjct: 186 DRVEGYSFSPDGTYLSLLWSREDQAPEAFIESHSASGL---IGDAMRGIRYLRDASTIVP 242

Query: 294 NNSKESFEYLSHRNHP--------SLSAYFDEGENLTPETVDKCPIPFF----------- 334
             +     +L     P         +    D    L    V   P+  F           
Sbjct: 243 LRADRRTVWLPPHPDPLTGKPMIRIVQPAIDATGKLFAIYVRSLPLDMFYRNLNDAPAGS 302

Query: 335 ----VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390
               V   GN+   + +        +   + I       L           +  M   SD
Sbjct: 303 TLTIVDRKGNVILGSSNQHGGDGGATASALGI-----RSLGDGFGGLVERYQDGMFVTSD 357

Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR------INK 444
           +        +H   W    + A+              +    +     D +         
Sbjct: 358 QLPGTDWVLVHAYSWK-TIAAALALRFSLVTGLVAGIIVMLWLFAIQFDRKGLIPNYRRA 416

Query: 445 RKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
           +++    +   +IL     G+ +++  +G +L  N A+ +L     ++ L          
Sbjct: 417 QRLLESEVLNRTILRTAPVGLGLLSAQDGSVLLQNNAMLELSARTSDEPLPIRLWEAYRH 476

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                 +               +            L   ++  +   ++    T+ DIS 
Sbjct: 477 AVGRSSDE-------DGALLQHDLAIEREGANPVYLQANVVAARYRGANVLLCTLLDISL 529

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            K+ + KL  A+  A++ +  KS FLA +SHEIRTPL AIIG  E+++        + + 
Sbjct: 530 RKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPL----SEQQ 585

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            E  + ++   N +L I+ND+LD+SK+ESG+M L   P  +   + E +      A  K 
Sbjct: 586 SERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAYAPLAESKG 645

Query: 684 ILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIST----THTSNEEVI 738
           + + +S    + R    D   ++Q+  N++ NAI FT  G  I I             + 
Sbjct: 646 LALLSSIGEGVARHYTGDPTRIRQVLSNLIGNAIKFTERG-HISIDVHRAKAARDGSAIE 704

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           + V DTG+G+    +      + Q   S   R  G+GLGLPL + +V    G   I S P
Sbjct: 705 IWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLP 764

Query: 799 AKGTLIEIIFPLYDTSH 815
             GT + +  PL +  H
Sbjct: 765 DFGTTVTVALPLREARH 781


>gi|218258256|ref|ZP_03474658.1| hypothetical protein PRABACTJOHN_00312 [Parabacteroides johnsonii DSM
            18315]
 gi|218225599|gb|EEC98249.1| hypothetical protein PRABACTJOHN_00312 [Parabacteroides johnsonii DSM
            18315]
          Length = 1131

 Score =  303 bits (776), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 103/544 (18%), Positives = 188/544 (34%), Gaps = 38/544 (6%)

Query: 276  HTINLNQYTKKQYFGTLQNNSKE---SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP 332
                L           L++           +   +        D+        +D   + 
Sbjct: 610  EETGLPVRWAVTTKTRLEDKEGNLYIVATMVDTTDIRRNELELDDIRRELSVALDAGSLS 669

Query: 333  FFVYSHGNLFYANPSFLLLTKYK-SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR 391
             + Y          +F  L +   + D +   G L  L       D+       + R  R
Sbjct: 670  AWCYDVQK-----DTFTSLYRKTLANDGLSNKGALDLL-----HPDDKEKYSRFMSRLSR 719

Query: 392  TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV 451
                    +   +         T+    K+ +  E     G E         ++++E   
Sbjct: 720  GVENKLREVFRFRRGEGYDWFETYAIGLKSEKTGEVEQIIGTERNITGEMKRRQELEENK 779

Query: 452  MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
            +QL   L+A        N +  I   +   +   G  +       F          ++  
Sbjct: 780  LQLDFTLDAAQIISWEYNPDTRI-FYSPRSTVFEGMTISLDEYLSFVDL---EDRDLLRK 835

Query: 512  YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL-PFSSC----YSLTMHDISEWKQ 566
             L ++        +E                +         +           DI++ K 
Sbjct: 836  GLEDLAC-GKIHVMEVQIRTMVPALGDRWFEMHAVPYGRNENGKIRKLIGLRRDITDLKM 894

Query: 567  EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
              N+L   +  AE+ +  KS FLA +SHEIRTPL AI+GFS +I              EY
Sbjct: 895  T-NELIRLRNKAEEANRLKSAFLANMSHEIRTPLNAIVGFSNLIA----MAEEPDEIGEY 949

Query: 627  ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
               I+ +  L+L +VND+LD+SKIE+G+M+ ++  V L E  +    + +    +  + +
Sbjct: 950  VKIIETNNELLLQLVNDILDLSKIEAGQMDFNYSAVDLSEIFNNLQQVYKSRVKD-GVDL 1008

Query: 687  RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV-ILRVRDTG 745
                 +    I ++   + Q+  N LSNA  +T  G    I+  +     +    V DTG
Sbjct: 1009 VCHLPSVACVIHSEKNRLTQVLSNFLSNACKYTSEGS---ITMGYERIGAILRFYVADTG 1065

Query: 746  VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
             G+    +    + F +  +      +GTGLGL + ++++ +  GK  + S   KG+   
Sbjct: 1066 KGLAEENIPHVFERFAKFDSF----VQGTGLGLSICESIIQSLDGKIGVDSELGKGSTFW 1121

Query: 806  IIFP 809
               P
Sbjct: 1122 FTIP 1125



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/370 (11%), Positives = 95/370 (25%), Gaps = 48/370 (12%)

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYSHG--NLFYANPSFLLLTKYKSVDDIEIAGG 365
                  +        E + + P    +Y      +   NP         +   I     
Sbjct: 391 RKRKEDAYKTANTKMMELLSRMPDMATIYDSDLNIVDIVNPDNHNWKDVDTRCQIGKNLK 450

Query: 366 LSTL-LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
              L     K   +  I  V            + +                   +     
Sbjct: 451 DLHLEYPQAKEMLDEIILHVKRTVETGEVTVFNCKYGEKDR---------IKYTKARVVP 501

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN--REGIILSTNRAVS 482
            EN        +     + ++++      L SI++    G+ I +   E   L  N  VS
Sbjct: 502 FENNSVICFTHDVTPYVVAEKEILRLKTFLQSIMDNLPVGLFIKDVSNEYRYLFYNNKVS 561

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
           + +    + +L K     +     S+       +L  D   +  ++         +    
Sbjct: 562 EFYKEAFDCMLGKN-DFEVNDLKASLFREEDNRVLQSDKPISFNRVLFDEETGLPVRWAV 620

Query: 543 IIIKKLPFSSC---YSLTMHDISEWKQEKNKLSHAKKIAEKESSH-----------KSDF 588
               +L           TM D ++ ++ + +L   ++                   K  F
Sbjct: 621 TTKTRLEDKEGNLYIVATMVDTTDIRRNELELDDIRRELSVALDAGSLSAWCYDVQKDTF 680

Query: 589 LA----RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
            +     ++++         G S         P    +Y  + + + R         N L
Sbjct: 681 TSLYRKTLAND---------GLSNKGALDLLHPDDKEKYSRFMSRLSRGVE------NKL 725

Query: 645 LDISKIESGK 654
            ++ +   G+
Sbjct: 726 REVFRFRRGE 735



 Score = 46.6 bits (109), Expect = 0.017,   Method: Composition-based stats.
 Identities = 41/384 (10%), Positives = 93/384 (24%), Gaps = 21/384 (5%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144
           F  ++         + ++ +        M+G    +V+D+           +L+      
Sbjct: 543 FIKDVSNEYRYLFYNNKVSEFYKEAFDCMLGKNDFEVNDLKASLFREEDNRVLQSDKPIS 602

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
               L+  E              +  +      +    +V    +  +   L     +  
Sbjct: 603 FNRVLFDEETGLPVRWAVTTKTRLEDKEGNL--YIVATMVDTTDIRRNELELDDIRRELS 660

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
             L          + +K    S           +   +L   +    +        L   
Sbjct: 661 VALDAGSLSAWCYDVQKDTFTSLYRKTLANDGLSNKGALDLLHPDDKEKYSRFMSRLSRG 720

Query: 265 EESSLPEQEDFHTINL----NQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
            E+ L E   F           Y             +      +           +E + 
Sbjct: 721 VENKLREVFRFRRGEGYDWFETYAIGLKSEKTGEVEQIIGTERNITGEMKRRQELEENKL 780

Query: 321 LTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
               T+D   I  + Y+    +FY+  S +      S+D+              +  D  
Sbjct: 781 QLDFTLDAAQIISWEYNPDTRIFYSPRSTVFEGMTISLDEYLS-------FVDLEDRDLL 833

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
                 L       +    R   +    +    M  +P    N+  +     G+  +  D
Sbjct: 834 RKGLEDLACGKIHVMEVQIR-TMVPALGDRWFEMHAVP-YGRNENGKIRKLIGLRRDITD 891

Query: 440 TRINKRKME-----IEVMQLCSIL 458
            ++    +       E  +L S  
Sbjct: 892 LKMTNELIRLRNKAEEANRLKSAF 915


>gi|254182943|ref|ZP_04889536.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 1655]
 gi|184213477|gb|EDU10520.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 1655]
          Length = 1014

 Score =  303 bits (776), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 126/677 (18%), Positives = 232/677 (34%), Gaps = 59/677 (8%)

Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH 233
           +F   +G+ ++H  +      A+G     +          + ++ + +  +   QSP P 
Sbjct: 111 QFDAHQGYAVLHTPQGAPAALAVGIPAPGRS---ASAFAPYLALLETQLLMGDGQSPLPD 167

Query: 234 LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293
            R++    S    Y       + +         S+                 +     + 
Sbjct: 168 DRVEGYSFSPDGTYLSLLWSREDQAPEAFIESHSASGL---IGDAMRGIRYLRDASTIVP 224

Query: 294 NNSKESFEYLSHRNHP--------SLSAYFDEGENLTPETVDKCPIPFF----------- 334
             +     +L     P         +    D    L    V   P+  F           
Sbjct: 225 LRADRRTVWLPPHPDPLTGKPMIRIVQPAIDATGKLFAIYVRSLPLDMFYSNLNDAPAGS 284

Query: 335 ----VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390
               V   GN+   + +        +   + I       L           +  M   SD
Sbjct: 285 TLTIVDRKGNVILGSSNQHGGDGGATASALGI-----RSLGDGFGGLVERYQDGMFVTSD 339

Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR------INK 444
           +        +H   W    + A+              +    +     D +         
Sbjct: 340 QLPGTDWVLVHAYSWK-TIAAALALRFSLVTGLVAGIIVMLWLFAIQFDRKGLIPNYRRA 398

Query: 445 RKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
           +++    +   +IL     G+ +++  +G +L  N A+ +L     ++ L          
Sbjct: 399 QRLLESEVLNRTILRTAPVGLGLLSAQDGSVLLQNNAMLELSARTSDEPLPIRLWEAYRH 458

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                 +               +            L   ++  +   ++    T+ DIS 
Sbjct: 459 AVGRSSDE-------DGALLQHDLAIEREGANPVYLQANVVAARYRGANVLLCTLLDISL 511

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            K+ + KL  A+  A++ +  KS FLA +SHEIRTPL AIIG  E+++        + + 
Sbjct: 512 RKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPL----SEQQ 567

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            E  + ++   N +L I+ND+LD+SK+ESG+M L   P  +   + E +      A  K 
Sbjct: 568 SERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAYAPLAESKG 627

Query: 684 ILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIST----THTSNEEVI 738
           + + +S    + R    D   ++Q+  N++ NAI FT  G  I I             + 
Sbjct: 628 LALLSSIGEGVARHYAGDPTRIRQVLSNLIGNAIKFTERG-HISIDVHRAKAARDGSAIE 686

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           + V DTG+G+    +      + Q   S   R  G+GLGLPL + +V    G   I S P
Sbjct: 687 IWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLP 746

Query: 799 AKGTLIEIIFPLYDTSH 815
             GT + +  PL +  H
Sbjct: 747 DFGTTVTVALPLREARH 763


>gi|154491483|ref|ZP_02031109.1| hypothetical protein PARMER_01092 [Parabacteroides merdae ATCC 43184]
 gi|154088472|gb|EDN87517.1| hypothetical protein PARMER_01092 [Parabacteroides merdae ATCC 43184]
          Length = 1041

 Score =  303 bits (776), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 103/544 (18%), Positives = 188/544 (34%), Gaps = 38/544 (6%)

Query: 276  HTINLNQYTKKQYFGTLQNNSKE---SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP 332
                L           L++           +   +        D+        +D   + 
Sbjct: 520  EETGLPVRWAVTTKTRLEDKEGNLYIVATMVDTTDIRRNELELDDIRRELSVALDAGSLS 579

Query: 333  FFVYSHGNLFYANPSFLLLTKYK-SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR 391
             + Y          +F  L +   + D +   G L  L       D+       + R  R
Sbjct: 580  AWCYDVQK-----DTFTSLYRKTLANDGLSNKGALDLL-----HPDDKEKYSRFMSRLSR 629

Query: 392  TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV 451
                    +   +         T+    K+ +  E     G E         ++++E   
Sbjct: 630  GVENKLREVFRFRRGEGYDWFETYAIGLKSEKTGEVEQIIGTERNITGEMKRRQELEENK 689

Query: 452  MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
            +QL   L+A        N +  I   +   +   G  +       F          ++  
Sbjct: 690  LQLDFTLDAAQIISWEYNPDTRI-FYSPRSTVFEGMTISLDEYLSFVDL---EDRDLLRK 745

Query: 512  YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL-PFSSC----YSLTMHDISEWKQ 566
             L ++        +E                +         +           DI++ K 
Sbjct: 746  GLEDLAC-GKIHVMEVQIRTMVPALGDRWFEMHAVPYGRNENGKIRKLIGLRRDITDLKM 804

Query: 567  EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
              N+L   +  AE+ +  KS FLA +SHEIRTPL AI+GFS +I              EY
Sbjct: 805  T-NELIRLRNKAEEANRLKSAFLANMSHEIRTPLNAIVGFSNLIA----MAEEPDEIGEY 859

Query: 627  ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
               I+ +  L+L +VND+LD+SKIE+G+M+ ++  V L E  +    + +    +  + +
Sbjct: 860  VKIIETNNELLLQLVNDILDLSKIEAGQMDFNYSAVDLSEIFNNLQQVYKSRVKD-GVDL 918

Query: 687  RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV-ILRVRDTG 745
                 +    I ++   + Q+  N LSNA  +T  G    I+  +     +    V DTG
Sbjct: 919  VCHLPSVACVIHSEKNRLTQVLSNFLSNACKYTSEGS---ITMGYERIGAILRFYVADTG 975

Query: 746  VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
             G+    +    + F +  +      +GTGLGL + ++++ +  GK  + S   KG+   
Sbjct: 976  KGLAEENIPHVFERFAKFDSF----VQGTGLGLSICESIIQSLDGKIGVDSELGKGSTFW 1031

Query: 806  IIFP 809
               P
Sbjct: 1032 FTIP 1035



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 40/369 (10%), Positives = 96/369 (26%), Gaps = 46/369 (12%)

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYSHG--NLFYANPSFLLLTKYKSVDDIEIAGG 365
                  +        E + + P    +Y      +   NP         +   I     
Sbjct: 301 RKRKEDAYKTANTKMMELLSRMPDMATIYDFDLNIVDIVNPDNHNWKDVDTRCQIGKN-- 358

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
           L  L      +     + ++  +        +                     +      
Sbjct: 359 LKDLHLEYPQAKEMLDEIILHVKRTVETGEVTVFNCKYGKKDR------IKYTKARVVPF 412

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN--REGIILSTNRAVSK 483
           EN        +     + ++++      L SI++    G+ I +   E   L  N  VS+
Sbjct: 413 ENNSVICFTHDVTPYVVAEKEILRLKTFLQSIMDNLPVGLFIKDVSNEYRYLFYNNKVSE 472

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
            +    + +L K     +     S+       +L  D   +  ++         +     
Sbjct: 473 FYKEAFDCMLGKN-DFEVNDLKASLFREEDNRVLQSDKPISFNRVLFDEETGLPVRWAVT 531

Query: 544 IIKKLPFSSC---YSLTMHDISEWKQEKNKLSHAKKIAEKESSH-----------KSDFL 589
              +L           TM D ++ ++ + +L   ++                   K  F 
Sbjct: 532 TKTRLEDKEGNLYIVATMVDTTDIRRNELELDDIRRELSVALDAGSLSAWCYDVQKDTFT 591

Query: 590 A----RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
           +     ++++         G S         P    +Y  + + + R         N L 
Sbjct: 592 SLYRKTLAND---------GLSNKGALDLLHPDDKEKYSRFMSRLSRGVE------NKLR 636

Query: 646 DISKIESGK 654
           ++ +   G+
Sbjct: 637 EVFRFRRGE 645



 Score = 46.6 bits (109), Expect = 0.017,   Method: Composition-based stats.
 Identities = 41/384 (10%), Positives = 93/384 (24%), Gaps = 21/384 (5%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144
           F  ++         + ++ +        M+G    +V+D+           +L+      
Sbjct: 453 FIKDVSNEYRYLFYNNKVSEFYKEAFDCMLGKNDFEVNDLKASLFREEDNRVLQSDKPIS 512

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
               L+  E              +  +      +    +V    +  +   L     +  
Sbjct: 513 FNRVLFDEETGLPVRWAVTTKTRLEDKEGNL--YIVATMVDTTDIRRNELELDDIRRELS 570

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
             L          + +K    S           +   +L   +    +        L   
Sbjct: 571 VALDAGSLSAWCYDVQKDTFTSLYRKTLANDGLSNKGALDLLHPDDKEKYSRFMSRLSRG 630

Query: 265 EESSLPEQEDFHTINL----NQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
            E+ L E   F           Y             +      +           +E + 
Sbjct: 631 VENKLREVFRFRRGEGYDWFETYAIGLKSEKTGEVEQIIGTERNITGEMKRRQELEENKL 690

Query: 321 LTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
               T+D   I  + Y+    +FY+  S +      S+D+              +  D  
Sbjct: 691 QLDFTLDAAQIISWEYNPDTRIFYSPRSTVFEGMTISLDEYLS-------FVDLEDRDLL 743

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
                 L       +    R   +    +    M  +P    N+  +     G+  +  D
Sbjct: 744 RKGLEDLACGKIHVMEVQIR-TMVPALGDRWFEMHAVP-YGRNENGKIRKLIGLRRDITD 801

Query: 440 TRINKRKME-----IEVMQLCSIL 458
            ++    +       E  +L S  
Sbjct: 802 LKMTNELIRLRNKAEEANRLKSAF 825


>gi|320646560|gb|EFX15476.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli O157:H- str. 493-89]
 gi|320651931|gb|EFX20306.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli O157:H- str. H 2687]
          Length = 949

 Score =  303 bits (776), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 99/495 (20%), Positives = 186/495 (37%), Gaps = 41/495 (8%)

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
             P+   +             + LT  +S    +                    + ++L 
Sbjct: 239 TLPMGVTILDENGHT-----LISLTGPESKIKADPRWMQERSWFGY----TEGFRELVLK 289

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV---DTRINK 444
           ++      +      +    E    +              +       E         + 
Sbjct: 290 KNLPPSSLSIVYSVPVDKVLERIRMLILNAILLNVLAGAALFTLARMYERRIFIPAESDA 349

Query: 445 RKMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            ++E        I+ +   GI I+   +G+ + +N            +  ++        
Sbjct: 350 LRLEEHEQFNRKIVASAPVGICILRTADGVNILSNELAHTYLNMLTHEDRQR-------- 401

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                    LT+I+       ++      T     L +  +  +    +     + D+S 
Sbjct: 402 ---------LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSS 448

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + +  L    + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R 
Sbjct: 449 RVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR- 506

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
                 ++ S +L+L I++D+LD SKIES ++ +     S  E ++   +        K+
Sbjct: 507 --LVTAMNNSSSLLLKIISDILDFSKIESEQLMIEPREFSPREVMNHITANYLPLVVRKQ 564

Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           + +      ++P  +  D   ++Q+  N+LSNAI FT +G  I++       + + +RVR
Sbjct: 565 LGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG-CIVLHVR-ADGDYLSIRVR 622

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTGVG+   E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+
Sbjct: 623 DTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGS 682

Query: 803 LIEIIFPLYDTSHPH 817
              +  PLY   +P 
Sbjct: 683 QFTVRIPLYGAQYPQ 697


>gi|320103763|ref|YP_004179354.1| PAS/PAC sensor signal transduction histidine kinase [Isosphaera
           pallida ATCC 43644]
 gi|319751045|gb|ADV62805.1| PAS/PAC sensor signal transduction histidine kinase [Isosphaera
           pallida ATCC 43644]
          Length = 460

 Score =  303 bits (776), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 84/425 (19%), Positives = 168/425 (39%), Gaps = 22/425 (5%)

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
           A +   +  R  S      P       P   P           R     +E +  Q  ++
Sbjct: 28  AAIQAEELARGLSALDQNRPIWPVRSTPHRRPAECFNAIAPALRSRIAALESDRQQFRAV 87

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
           LE+  +G+ +++ +  +   N +   LFG     + R    +    +    +   L    
Sbjct: 88  LESMIEGVLVVDADRRLRYANASAENLFGLGPRAVGRLIHELIRSPSIHRAVEATLAGQS 147

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI 577
           +     +L           K+L++       P      L  H+I+E ++ +         
Sbjct: 148 AHRDEVSLVGGESVPRLNAKILAVNGTPLSGPP-RAALLVFHNITELRRLE--------- 197

Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
                  + DF+A VSHE++TPL +I  +++ + +             + + ID     +
Sbjct: 198 -----RMRQDFVANVSHELKTPLASIRAYADSLLDWAL--EDPEITRRFVSQIDEQAERL 250

Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI--RTSFANNIP 695
             +++DLL +++IESG+  + F P++L   V   +   +  A  + + +   T       
Sbjct: 251 DVLIHDLLSLARIESGQDLITFRPLALAPLVERRVESFRDRAQSRNVSLSFVTELPPQF- 309

Query: 696 RILADLRSVKQIALNILSNAIHFTPS-GGQIIISTTHT-SNEEVILRVRDTGVGMTNYEL 753
            ILAD  +++QI  N++ NAI ++      + +          V + V D G+G+ + E 
Sbjct: 310 TILADEEALRQILDNLIDNAIKYSSDVDPWVKVVCRGDGEAGMVAIDVIDNGLGIASEEQ 369

Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
            +  + F ++  ++     GTGLGL + K +V A  G+  + S    G+   +  P    
Sbjct: 370 TRIFERFYRVDKARSRERGGTGLGLAIVKHLVQALRGEIELQSRVGAGSRFTVRLPRQRP 429

Query: 814 SHPHD 818
           ++P D
Sbjct: 430 ANPSD 434



 Score = 41.9 bits (97), Expect = 0.39,   Method: Composition-based stats.
 Identities = 23/245 (9%), Positives = 61/245 (24%), Gaps = 21/245 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +DA   L+  +       G     + G  + ++     I  +  +   L  Q+    + +
Sbjct: 98  VDADRRLRYANASAENLFGLGPRAV-GRLIHELIRSPSI--HRAVEATLAGQSAHRDEVS 154

Query: 149 LWPIEGTNLYVP----IDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
           L  + G ++       + +   P+    R         + H            +RL++  
Sbjct: 155 L--VGGESVPRLNAKILAVNGTPLSGPPRA-----ALLVFHNITE-------LRRLERMR 200

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
                               ++       L               + + L    + LL+ 
Sbjct: 201 QDFVANVSHELKTPLASIRAYADSLLDWALEDPEITRRFVSQIDEQAERLDVLIHDLLSL 260

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
                 +              ++   + ++ ++     LS              E    +
Sbjct: 261 ARIESGQDLITFRPLALAPLVERRVESFRDRAQSRNVSLSFVTELPPQFTILADEEALRQ 320

Query: 325 TVDKC 329
            +D  
Sbjct: 321 ILDNL 325


>gi|218231513|ref|YP_002366258.1| sensor histidine kinase ResE [Bacillus cereus B4264]
 gi|218159470|gb|ACK59462.1| sensor histidine kinase ResE [Bacillus cereus B4264]
          Length = 591

 Score =  303 bits (776), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 80/371 (21%), Positives = 154/371 (41%), Gaps = 39/371 (10%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            ++ E  QL SIL + +DG+  +N+EG ++  N           E+       + L +  
Sbjct: 249 ALQQEKEQLASILSSMADGVITLNQEGEVVVINPPAEHFLQVWQEEK-----EIELSKKL 303

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
           PS +      ++  + +Q +E        +   + L   +            + D++E +
Sbjct: 304 PSELVELFHLVVESEQQQVVEINLQ----KGNYVVLMTPLYNQTKIRGAVAVLRDMTEER 359

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + +                + DF+A VSHE+RTP+  + G+SE I +            E
Sbjct: 360 RLE--------------KMRQDFIANVSHELRTPMVMLQGYSEAILDDIVQT--KEEIDE 403

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           +   I      +  +VN+LLD++++ESG + LH   V +   V +     Q  A +K + 
Sbjct: 404 FVQIIYDESVRLGKLVNELLDLARMESGHVELHIGEVDIHPFVEKIGRKFQGIAKDKEVA 463

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +   F + I +   D   ++Q+  N++ NAI  T +GG + +     +N  +I  V+D+G
Sbjct: 464 LTVDFKDPIEQYPFDADRMEQVLTNLIDNAIRHTNAGGHVTLVIDTKNNG-LIFEVQDSG 522

Query: 746 VGMTNYELEKAMKPFGQIPNSQQI-------RGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
            G+   ++      F +   ++          G        +AK +V  + GK  + S  
Sbjct: 523 AGIPEEDIPFLFDRFYKADKARTRGKKGGTGLGL------AIAKNIVQGHDGKISVSSVV 576

Query: 799 AKGTLIEIIFP 809
            +GT   +  P
Sbjct: 577 GEGTTFSVYLP 587


>gi|238758290|ref|ZP_04619468.1| Aerobic respiration control sensor protein arcB [Yersinia aldovae
           ATCC 35236]
 gi|238703413|gb|EEP95952.1| Aerobic respiration control sensor protein arcB [Yersinia aldovae
           ATCC 35236]
          Length = 778

 Score =  303 bits (776), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 74/374 (19%), Positives = 159/374 (42%), Gaps = 16/374 (4%)

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
                + ++  +   L S L+A+ D +   N +      NRA+  L G   + ++     
Sbjct: 142 HREQAQVELGQQSALLRSFLDASPDLVYYRNEDNEFSGCNRAMELLIGKSEKQLVGLTPK 201

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII--KKLPFSSCYSL 556
                +    +     ++   ++  T E+  +     +    LR +    ++        
Sbjct: 202 DVYAPDIAEKVMETDEKVFRHNVSLTYEQWLVYPDGRKACFELRKVPFYDRVGKRHGLMG 261

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
              DI+E K+ ++ L +        S  K+ F++ +SHE+RTPL  I+G S ++ +    
Sbjct: 262 FGRDITERKRYQDALEN-------ASRDKTTFISTISHELRTPLNGIVGLSRILLDTEL- 313

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
              +   ++Y   I  S   + +I ND++++ K+E  K+ L  +P+     +++  +L  
Sbjct: 314 ---DAEQLKYLKTIHVSAITLGNIFNDIIEMDKLERRKVQLDNQPIDFTGFMADLENLSG 370

Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
           L    K +         +P  ++ D   ++QI  N++ NA+ FT  G +I++       +
Sbjct: 371 LLVQPKGLKFIMEPQLPLPEKVITDGTRLRQILWNLIGNAVKFTQQG-KIVVRVHREDTD 429

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMGKFYI 794
            +   V D+G+G+   E +K    + Q+ +    +   GTG+GL ++K +  +  G   +
Sbjct: 430 RLTFEVEDSGMGIPEEEQDKIFAMYYQVKDHNGGQPATGTGIGLAVSKRLAQSMGGDITV 489

Query: 795 FSTPAKGTLIEIIF 808
            S    G+   +  
Sbjct: 490 QSRQGAGSCFTLTI 503



 Score = 42.3 bits (98), Expect = 0.37,   Method: Composition-based stats.
 Identities = 17/124 (13%), Positives = 36/124 (29%), Gaps = 5/124 (4%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN-TWYGKTTLWPIE 153
               +  +   IG    +++G+   DV      +      + + R N +   +  L   +
Sbjct: 177 FSGCNRAMELLIGKSEKQLVGLTPKDVYAPDIAEKVMETDEKVFRHNVSLTYEQWLVYPD 236

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
           G       +L  +P Y R  +  G  GFG           +   +   +  +        
Sbjct: 237 GRKACF--ELRKVPFYDRVGKRHGLMGFG--RDITERKRYQDALENASRDKTTFISTISH 292

Query: 214 HSSV 217
               
Sbjct: 293 ELRT 296



 Score = 39.2 bits (90), Expect = 3.0,   Method: Composition-based stats.
 Identities = 20/224 (8%), Positives = 54/224 (24%), Gaps = 10/224 (4%)

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
           V  L E       +++  +       E +    E+   +N     +++          + 
Sbjct: 77  VEQLEESRQRLSRLVEKLEVMRYRDLELNKQLTENIAQLNQEIVEREKAEKAHLQVVDKL 136

Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVD 358
            E + H           +   L    +D  P   +  +        N +  LL       
Sbjct: 137 KEEMGH--REQAQVELGQQSALLRSFLDASPDLVYYRNEDNEFSGCNRAMELLIGKSEKQ 194

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
            +        L      + + A K +           +      + +             
Sbjct: 195 LVG-------LTPKDVYAPDIAEKVMETDEKVFRHNVSLTYEQWLVYPDGRKACFELRKV 247

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
              ++  +     G   +  + +  +  +E       + +   S
Sbjct: 248 PFYDRVGKRHGLMGFGRDITERKRYQDALENASRDKTTFISTIS 291


>gi|291279183|ref|YP_003496018.1| hypothetical protein DEFDS_0784 [Deferribacter desulfuricans SSM1]
 gi|290753885|dbj|BAI80262.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 766

 Score =  303 bits (775), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 83/520 (15%), Positives = 180/520 (34%), Gaps = 32/520 (6%)

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
             +  +   +  E ++   +   +    GN+   N +   ++ Y S + I        L 
Sbjct: 123 ELHLSQQLAINNEILENALVWIDILDKEGNVVLWNKAAERISGYSSEEVIGNPKIWEWLY 182

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
                 +    K   +       I     +  I+     +  +++   +  +        
Sbjct: 183 PDENYRNEIFQKAKEILEGKLNVIDF---VTKIRTKSGEARYISWYSNKLYDVEDNFYGS 239

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI-AIINREGIILSTNRAVSKLFGYPV 489
             I  +  D    + K+     +       + D +      +G+ +S N+  + + GY  
Sbjct: 240 LAIGIDVTDKVKAEEKLRKSEEKFRVAFYTSPDAVNINRLEDGLYVSLNKGFTDITGYTE 299

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
           E+++ K               +   ++    + +  E          K   +   I ++ 
Sbjct: 300 EEVIGKTSKELNIWYDYKDREYLTKQLKENGIVRNYESRFRIKDGSIKYGLMSACIIEIS 359

Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS--DFLARVSHEIRTPLTAIIGFS 607
                     DI+++K+   +    ++   +    +S       ++H+    L+ I  + 
Sbjct: 360 GEKYILSITRDITDYKKAIEEKEKLQQQLFQAQRLESIGRLAGGIAHDFNNMLSIIYSYI 419

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
           + +           +   Y N I R+     D+V  LL  ++    KM    + ++++E 
Sbjct: 420 Q-LAQMHLDEKS--QVYSYINEIFRASERATDLVKQLLAFAR----KMPAQPKIINVNEI 472

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727
           +   + +++    E  I ++    +N   +  D   ++QI  N+  NA       G+III
Sbjct: 473 IFNMLKMLKRVIPE-SIELKFEPVDNNCFVKIDEVQLEQIITNLCVNAKDAIKDKGRIII 531

Query: 728 ST-------------THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
            T                  + V++ + DTG G+    L K  +PF          G+GT
Sbjct: 532 QTQKYIVEEEAKSLVELIPGKYVLISISDTGEGIEKEHLSKIFEPFFTTKEL----GKGT 587

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           GLGL     +V  N G   ++S    GT  +I FPL + +
Sbjct: 588 GLGLATVYGIVKQNNGFINVYSEKGVGTTFKIYFPLIEET 627



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/267 (12%), Positives = 75/267 (28%), Gaps = 19/267 (7%)

Query: 322 TPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
                D       +     N+  AN     L   K  D +     +  +L+         
Sbjct: 12  YRRYFDAINDAVLIIDKNYNINDANIKTEELLGIKIKDILGEKCFV--VLNVGFCPGEKC 69

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
             P       R+                    +   P    +          I  +    
Sbjct: 70  PLPKCKLNKKRSAFE--------TKINGRFYKVIVDPV--FDDDGNFDGSVHIIMDVTAN 119

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +  +  +  ++     ILE     I I+++EG ++  N+A  ++ GY  E+++  P    
Sbjct: 120 KAKELHLSQQLAINNEILENALVWIDILDKEGNVVLWNKAAERISGYSSEEVIGNPKIWE 179

Query: 501 LEQNTPSVMNHYLTEILS--LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CY 554
                 +  N    +           ++ +T   TK  +   +     KL          
Sbjct: 180 WLYPDENYRNEIFQKAKEILEGKLNVIDFVTKIRTKSGEARYISWYSNKLYDVEDNFYGS 239

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKE 581
                D+++  + + KL  +++     
Sbjct: 240 LAIGIDVTDKVKAEEKLRKSEEKFRVA 266



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 39/124 (31%), Gaps = 7/124 (5%)

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
           +     +A +D + II++   I   N    +L G  ++DIL +   V L           
Sbjct: 11  KYRRYFDAINDAVLIIDKNYNINDANIKTEELLGIKIKDILGEKCFVVLNVGFCPGEKCP 70

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNK 570
           L +      R   E          +   + +                + D++  K ++  
Sbjct: 71  LPKCKLNKKRSAFETKI-----NGRFYKVIVDPVFDDDGNFDGSVHIIMDVTANKAKELH 125

Query: 571 LSHA 574
           LS  
Sbjct: 126 LSQQ 129



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 37/332 (11%), Positives = 84/332 (25%), Gaps = 45/332 (13%)

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR-----ALGKRLDKKFS 205
            I G    V +D    P++  +  F G     I+     +          L    +   +
Sbjct: 86  KINGRFYKVIVD----PVFDDDGNFDG--SVHIIMDVTANKAKELHLSQQLAINNEILEN 139

Query: 206 HLHEIK----KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
            L  I     +G+  +  +  +  S  S    +        L     +++++ +  K  +
Sbjct: 140 ALVWIDILDKEGNVVLWNKAAERISGYSSEEVIGNPKIWEWLYPDENYRNEIFQKAK-EI 198

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS----LSAYFDE 317
           L  + + +       T +        Y   L +     +  L+     +          +
Sbjct: 199 LEGKLNVIDFVTKIRTKSGEARYISWYSNKLYDVEDNFYGSLAIGIDVTDKVKAEEKLRK 258

Query: 318 GENLTPETVDKCPIPFFVYSHGNLFYA--NPSFLLLTKYKSVDDIEIAG----------G 365
            E          P    +    +  Y   N  F  +T Y   + I               
Sbjct: 259 SEEKFRVAFYTSPDAVNINRLEDGLYVSLNKGFTDITGYTEEEVIGKTSKELNIWYDYKD 318

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
              L    K +             D +          I+ + E  +           +  
Sbjct: 319 REYLTKQLKENGIVRNYESRFRIKDGSIKYGLMSACIIEISGEKYILSITRDITDYKKA- 377

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
                       ++ +   ++   +  +L SI
Sbjct: 378 ------------IEEKEKLQQQLFQAQRLESI 397



 Score = 45.4 bits (106), Expect = 0.040,   Method: Composition-based stats.
 Identities = 18/142 (12%), Positives = 42/142 (29%), Gaps = 9/142 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMR-LCDVSDILHIDPNNHIGDL---LKRQNTWY 144
           +D  G +   ++   +  G  + ++IG   + +         N         L+ +    
Sbjct: 147 LDKEGNVVLWNKAAERISGYSSEEVIGNPKIWEWLYPDENYRNEIFQKAKEILEGKLNVI 206

Query: 145 G-KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
              T +    G   Y+      L  Y     F G    GI              ++ ++K
Sbjct: 207 DFVTKIRTKSGEARYISWYSNKL--YDVEDNFYGSLAIGI--DVTDKVKAEEKLRKSEEK 262

Query: 204 FSHLHEIKKGHSSVEKEKYDIF 225
           F           ++ + +  ++
Sbjct: 263 FRVAFYTSPDAVNINRLEDGLY 284



 Score = 42.3 bits (98), Expect = 0.34,   Method: Composition-based stats.
 Identities = 21/184 (11%), Positives = 46/184 (25%), Gaps = 15/184 (8%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI-DPNNHIGDLLKRQNTWYGKTTLW 150
            G    +++      G    ++IG    +++      D       L +       ++   
Sbjct: 281 DGLYVSLNKGFTDITGYTEEEVIGKTSKELNIWYDYKDREYLTKQLKENGIVRNYESRFR 340

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
             +G+  Y  +    + I       S      I              ++L ++      +
Sbjct: 341 IKDGSIKYGLMSACIIEISGEKYILS------ITRDITDYKKAIEEKEKLQQQLFQAQRL 394

Query: 211 KKGHSSVEKEKYD--------IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
           +          +D            Q    HL  K++V S         +        LL
Sbjct: 395 ESIGRLAGGIAHDFNNMLSIIYSYIQLAQMHLDEKSQVYSYINEIFRASERATDLVKQLL 454

Query: 263 TSEE 266
               
Sbjct: 455 AFAR 458


>gi|284165489|ref|YP_003403768.1| PAS/PAC sensor signal transduction histidine kinase [Haloterrigena
           turkmenica DSM 5511]
 gi|284015144|gb|ADB61095.1| PAS/PAC sensor signal transduction histidine kinase [Haloterrigena
           turkmenica DSM 5511]
          Length = 810

 Score =  303 bits (775), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 95/737 (12%), Positives = 239/737 (32%), Gaps = 35/737 (4%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNT----WYGKT 147
            G    ++E   +  G    +++G     V D   I+ +       +           + 
Sbjct: 97  DGRFTMVNEAYARMTGYEREELVGEHASLVVDEAAIEESKKRLTTEREGGADTENPAMEA 156

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
            L   +G    VP++       + +         G+V             +R+ +     
Sbjct: 157 KLQRPDGD--RVPVEGTFATRRTEDGRQE---EIGVVRDITERKRREQERRRVVRALEAA 211

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
            E        E  ++   +            ++          +         +L    +
Sbjct: 212 REGIS--LLDENGEFIYVNDAYAETFRYEPEEMIGEHWDDLGIEADPSRFVDDILPRISA 269

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY-FDEGENLTPETV 326
                     +  +  T        + +  E    +                        
Sbjct: 270 EGQWSGTTTCVRSDGTTFLSQHSLTETDDGELICLVRDITEQRERERDLQAVRTQLDVAT 329

Query: 327 DKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
           +   +  + +   G++  A+  F          ++   G            D+       
Sbjct: 330 EAASVGIWTWDIRGDVVTADDYFASTCGMDP--ELAADGAPMDAFYESIHEDDRTRTREQ 387

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
           L R+        A  + ++    + + +      + +     +  NG   +  + +  +R
Sbjct: 388 LERAVEETGEFEAE-YRVRDADGDLVWVVARGEVEYDDDGTPVRLNGAVSDVTELKRRER 446

Query: 446 KMEIEVMQLCSILEATSDG-IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           ++E    +  ++ E   +G + + +          AV        E +  +  +     +
Sbjct: 447 QLEESERRYRTLAEHFPNGAVGVYDENFRYTLIEGAVLGDTLPEAEQMESERMSAVFPDD 506

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY--SLTMHDIS 562
               +       +        E  +   T + +   +     +      +       +I+
Sbjct: 507 VSRQLIPLYRAAIEDG-----ETDSTTITFDGEHWQIWAAPLRDADGEIFAGLSLAQEIT 561

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E  + + +L    +  E+ +     F    SH+++ PL  +  + + +   R+  + +  
Sbjct: 562 EQVERERRLEELVERLEESNERLEQFAYAASHDLQEPLRMVSSYLQ-LIESRYTDVLDAD 620

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             E+ ++       + D+++ LL  S++E+G     FEPV+LD+ +  A+  +Q+   E 
Sbjct: 621 GREFIDFAVDGAERMRDMIDGLLAYSRVETGGDP--FEPVALDDVLENALEDLQVRIEET 678

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT-PSGGQIIISTTHTSNEE--VIL 739
              I T     +P +  D   ++Q+  N+L NA+ ++     ++ +S    +  +    +
Sbjct: 679 NAEITTE---ELPHVTGDRDQLRQLFQNLLDNALEYSGDEPPRVHVSARRRAGRDDRWEI 735

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            VRD G+G+   + ++  + F  + +  Q   +GTG+GL L + +V+ + G+  + S P 
Sbjct: 736 AVRDEGIGIDPDDADEIFEVFESLHS--QGEHDGTGIGLALCERIVERHGGEIRLESEPG 793

Query: 800 KGTLIEIIFPLYDTSHP 816
           +G    +  P  D   P
Sbjct: 794 EGATFTVTLPAADEHEP 810



 Score = 96.6 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/346 (12%), Positives = 102/346 (29%), Gaps = 15/346 (4%)

Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302
           +       ++  +     +    E+     E        +    ++      N +     
Sbjct: 1   MRPLEFIVEEDRERTVTEIEGVFETGSARLEVELLTKGGERIPYEFVAVGLENPEGKRVL 60

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIE 361
                  +     D   +     V+      +V    G     N ++  +T Y+  + + 
Sbjct: 61  AGIGRDVTERKKRDRELSKYETIVETMSDGIYVKGEDGRFTMVNEAYARMTGYEREELVG 120

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
               L     A + S            +D    A  A+L     +R            + 
Sbjct: 121 EHASLVVDEAAIEESKKRLTTE-REGGADTENPAMEAKLQRPDGDRVPVEGTFATRRTED 179

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
            +  E     G+  +  + +  +++    V      LEA  +GI++++  G  +  N A 
Sbjct: 180 GRQEE----IGVVRDITERKRREQERRRVVR----ALEAAREGISLLDENGEFIYVNDAY 231

Query: 482 SKLFGYPVEDILRKPFTVF-LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
           ++ F Y  E+++ + +    +E +    ++  L  I +          T     +     
Sbjct: 232 AETFRYEPEEMIGEHWDDLGIEADPSRFVDDILPRISAEGQWSG---TTTCVRSDGTTF- 287

Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
           L                + DI+E ++ +  L   +   +  +   S
Sbjct: 288 LSQHSLTETDDGELICLVRDITEQRERERDLQAVRTQLDVATEAAS 333



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 52/500 (10%), Positives = 117/500 (23%), Gaps = 75/500 (15%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147
           +D +G    +++   +T      +MIG    D+          + I   +  +  W G T
Sbjct: 218 LDENGEFIYVNDAYAETFRYEPEEMIGEHWDDLGIEADPSRFVDDILPRISAEGQWSGTT 277

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
           T    +GT       L        + E        +V       +     + +  +    
Sbjct: 278 TCVRSDGTTFLSQHSLTET----DDGEL-----ICLVRDITEQRERERDLQAVRTQLDVA 328

Query: 208 HEIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSSLTEYYA------HKDDVLKTEKY 259
            E           + D+ +                +      A        D     E+ 
Sbjct: 329 TEAASVGIWTWDIRGDVVTADDYFASTCGMDPELAADGAPMDAFYESIHEDDRTRTREQL 388

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH----PSLSAYF 315
                E      +      + +            ++           +            
Sbjct: 389 ERAVEETGEFEAEYRVRDADGDLVWVVARGEVEYDDDGTPVRLNGAVSDVTELKRRERQL 448

Query: 316 DEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
           +E E       +  P     VY        N  + L+      D +  A  + +   +  
Sbjct: 449 EESERRYRTLAEHFPNGAVGVYDE------NFRYTLIEGAVLGDTLPEAEQMESERMSAV 502

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
             D+ + + + LYR+            TI ++ E+            +   E      + 
Sbjct: 503 FPDDVSRQLIPLYRA--AIEDGETDSTTITFDGEHWQIW---AAPLRDADGEIFAGLSLA 557

Query: 435 PEDVDTRINKRK-----------------------------MEIEVMQLCSILEATSDGI 465
            E  +    +R+                             + +    L  I    +D  
Sbjct: 558 QEITEQVERERRLEELVERLEESNERLEQFAYAASHDLQEPLRMVSSYLQLIESRYTD-- 615

Query: 466 AIINREGI--ILSTNRAVSKL-------FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
            +++ +G   I        ++         Y   +    PF      +        L   
Sbjct: 616 -VLDADGREFIDFAVDGAERMRDMIDGLLAYSRVETGGDPFEPVALDDVLENALEDLQVR 674

Query: 517 LSLDLRQTLEKITLGSTKEE 536
           +     +   +     T + 
Sbjct: 675 IEETNAEITTEELPHVTGDR 694


>gi|218233444|ref|YP_002368453.1| sporulation kinase A [Bacillus cereus B4264]
 gi|218161401|gb|ACK61393.1| sporulation kinase A [Bacillus cereus B4264]
          Length = 510

 Score =  303 bits (775), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 95/523 (18%), Positives = 196/523 (37%), Gaps = 39/523 (7%)

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDD 359
            + +                +     +  P     +   G + + NPS   +  Y S++ 
Sbjct: 13  RHPNISRRLRNHIQDRSLTEMYASLFEHNPDSIISLNLEGVILHINPSAERILGYTSLE- 71

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
           +E     S L       + +  + V+    +         + +I       L +      
Sbjct: 72  LEQKNITSIL-------EAHISEQVLQNIKNTEADNQQEYILSIYHKNGFLLDVVTKLVP 124

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
              Q         ++P +   RI +  ++    +L +++ +    +   + EG  L  N 
Sbjct: 125 IFVQNRLTGVYAIMKPLEKSERI-ENMLKESEKRLRTLVNSMPAFVIFKDHEGRWLEAND 183

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMN----HYLTEILSLDLRQTLEKITLGSTKE 535
                F +       K  +  ++ N            + E+     RQ L        ++
Sbjct: 184 YALSCFNFHHVPYHGKKDSELIQYNEAYREAFLHCEEIDELAWQ-QRQILHGEEFIIHRD 242

Query: 536 EKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
           +  L L I    L           +   D++E K+ +  L  ++K+A           A 
Sbjct: 243 DFDLILSISKVPLYHPDGSRKGLIVMGRDVTELKETEKLLRKSEKLAVV-----GQLTAG 297

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           ++HEIR PLT++ GF  ++      P  +     Y + +    + +  I +  + +SK +
Sbjct: 298 IAHEIRNPLTSLKGFLTLLL-----PEISEEQKWYIDVMLSEISQMESITSQFMAMSKPQ 352

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
                L  +  ++   + E ++ +   A    + I     + +  I  D   +KQ+ +NI
Sbjct: 353 ----VLSIQTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYVYDIQCDGNQLKQVFINI 408

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           L NAI   P+GG I I T    +  +++R+ D G G+    + +  +PF        ++ 
Sbjct: 409 LKNAIEAMPNGGNIFIQTKPLEDNFILIRIIDEGCGIPEDRISRLGEPFY------SLKE 462

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           +GTGLGL +   +++ + G+ +I S   KGT+++I  PL  + 
Sbjct: 463 KGTGLGLMMCYKIIEEHHGRLHISSELNKGTIVDIELPLSSSH 505


>gi|332524176|ref|ZP_08400403.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax benzoatilyticus
           JA2]
 gi|332107512|gb|EGJ08736.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax benzoatilyticus
           JA2]
          Length = 650

 Score =  303 bits (775), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 86/387 (22%), Positives = 165/387 (42%), Gaps = 14/387 (3%)

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490
           +            +  +      + +I +A    +   + +      N A  + FG    
Sbjct: 114 DDTHERLRQLAEERDTLSEHERFMRAIADALPGMVGYWDADLRCRFANIAYLEWFGRTPR 173

Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
            +L       L +        ++   L+ + ++    +T         L+  I  +    
Sbjct: 174 QVLGMRMQDLLGEELFRANERHIRGALAGEEQRFQRTMTRADGSTGYTLASYIPDRVDGR 233

Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH-------KSDFLARVSHEIRTPLTAI 603
              +++ + DIS+ K+ + +L        + ++        KS FLA +SHEIRTP+ AI
Sbjct: 234 VRGFNVIVADISDVKRAEIELERLNVQLVQRAAEADAATRAKSAFLANMSHEIRTPMNAI 293

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           IG + ++         + +       +D +   +L +V+D+LD+SKIE+GK++L  E   
Sbjct: 294 IGLTHLLARDA----TDDQQRSRLAKVDGAARHLLQVVSDILDLSKIEAGKLSLEREEFR 349

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
           LDE +  ++S+V+  A EK + +         R++ D   + Q+ +N+L+NA+ FT  GG
Sbjct: 350 LDEVLERSLSMVRTKAAEKGLELDVDTTPLPERLIGDPTRLAQVLINLLANAVRFTDRGG 409

Query: 724 -QIIISTTHTSNEEV--ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
            ++           +     V+D+G G+   +L +  + F Q  NS   R  GTGLGL L
Sbjct: 410 VRLHGRELWRDEHRLLARFEVQDSGPGIAPDQLGRLFEAFDQGDNSATRRHGGTGLGLAL 469

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEII 807
            +       G+  + S   +G+   + 
Sbjct: 470 TRRFATLMGGEAGVDSRLGEGSTFWVS 496



 Score = 42.7 bits (99), Expect = 0.29,   Method: Composition-based stats.
 Identities = 45/389 (11%), Positives = 95/389 (24%), Gaps = 35/389 (8%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTT 148
           DA    +  +    +  G    +++GMR+ D+           HI   L  +   + +T 
Sbjct: 152 DADLRCRFANIAYLEWFGRTPRQVLGMRMQDLLGEELFRANERHIRGALAGEEQRFQRTM 211

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +G+  Y     + +P    +    GF    IV             +RL+ +     
Sbjct: 212 T-RADGSTGYTL--ASYIPDR-VDGRVRGFN--VIVADISDVKRAEIELERLNVQLVQRA 265

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
                 +  +       S +   P   +   ++ L    A  D            +    
Sbjct: 266 AEADAATRAKSAFLANMSHEIRTPMNAII-GLTHLLARDATDDQQRSRLAKVDGAARHLL 324

Query: 269 L--PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH-----------PSLSAYF 315
               +  D   I   + + ++    L    + S   +  +             P      
Sbjct: 325 QVVSDILDLSKIEAGKLSLEREEFRLDEVLERSLSMVRTKAAEKGLELDVDTTPLPERLI 384

Query: 316 DEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLL-------LTKYKSVDDIEIAGGLST 368
            +   L    ++           G +                  + +          L  
Sbjct: 385 GDPTRLAQVLINLLANAVRFTDRGGVRLHGRELWRDEHRLLARFEVQDSGPGIAPDQLGR 444

Query: 369 LLDAPKLSDNNAIKP-------VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
           L +A    DN+A +        + L R   T +   A + +                   
Sbjct: 445 LFEAFDQGDNSATRRHGGTGLGLALTRRFATLMGGEAGVDSRLGEGSTFWVSAEFGLPPP 504

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIE 450
                  P            + +R +  E
Sbjct: 505 EGTQPLPPPLQDPWPLRADHLGRRILLAE 533



 Score = 40.4 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/159 (11%), Positives = 37/159 (23%), Gaps = 28/159 (17%)

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDI---- 360
           R          E E       D  P     +       +AN ++L          +    
Sbjct: 121 RQLAEERDTLSEHERFMRAIADALPGMVGYWDADLRCRFANIAYLEWFGRTPRQVLGMRM 180

Query: 361 -----EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
                E     +       L+         + R+D +     A     + +         
Sbjct: 181 QDLLGEELFRANERHIRGALAGEEQRFQRTMTRADGSTGYTLASYIPDRVDGR------- 233

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
                          N I  +  D +  + ++E   +QL
Sbjct: 234 -----------VRGFNVIVADISDVKRAEIELERLNVQL 261


>gi|322421925|ref|YP_004201148.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
 gi|320128312|gb|ADW15872.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
          Length = 951

 Score =  303 bits (775), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 81/256 (31%), Positives = 137/256 (53%), Gaps = 8/256 (3%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E +    +L  A + A+  S  KS FLA +SHEIRTP+  ++G +E++   R     + +
Sbjct: 260 ELELTVAELQRAMEAAQAASRAKSQFLANMSHEIRTPMNGMLGMAELLMATRL----DEQ 315

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
              + + + RSG  +L I+ND+LD SKIE+GK+ L     +L++ V++ I L+   A+ K
Sbjct: 316 QRRFVSSVRRSGEALLSIINDILDFSKIEAGKLELEETAFNLEDTVADVIELLAETAHRK 375

Query: 683 RILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQII---ISTTHTSNEEVI 738
            + I     N++P +L  D   V Q+ +N++ NA+ FT  G  II   +   H     V+
Sbjct: 376 GLEIAALVENDVPPVLLGDQVRVHQVLMNLVGNAVKFTDQGEVIISGMLKEEHKEEVTVL 435

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           +RV DTG+G+++    +    F Q  NS   +  GTGLGL +A+ +V+   G+  + S  
Sbjct: 436 IRVSDTGIGISDEVKGRIFDGFSQADNSTTRKYGGTGLGLTIARQLVELMGGEIGVESEV 495

Query: 799 AKGTLIEIIFPLYDTS 814
            +G+       L+  +
Sbjct: 496 GRGSTFWFTLKLHKEA 511


>gi|309789502|ref|ZP_07684085.1| sensory transduction histidine kinase [Oscillochloris trichoides
           DG6]
 gi|308228468|gb|EFO82113.1| sensory transduction histidine kinase [Oscillochloris trichoides
           DG6]
          Length = 528

 Score =  303 bits (775), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 90/549 (16%), Positives = 183/549 (33%), Gaps = 33/549 (6%)

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
           +    +D      +   +           +++   +      +         N     + 
Sbjct: 3   TFQANDDLGHEERSLRERLAAVEAQLAAYQQAANLMEAWKDAAGPQLLTILNNFASGIL- 61

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
                  +   G   + NP    +      + I              L    A       
Sbjct: 62  ------LISVDGRFLFVNPRAAAMFDLHPEEMIGR-------YVEEILPPEIAQVYQERT 108

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
           R             +                   +Q    +       +       + ++
Sbjct: 109 RELFALQITHEYERSFTLPLSERTLFISNQILATSQGDALLSSLV---DISTRTRVEAEL 165

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF----TVFLEQ 503
            + + +  ++ +A   GI + +  G I+ +N    +L G   E+   +         +  
Sbjct: 166 RVALTKYRTLFDAMPLGITVSDHTGQIVESNAMAERLLGIGKEEHHHRQIDGVEWRIVRP 225

Query: 504 NTPSVMNHYLTEILSLDLRQTLE-KITLGSTKEEKLLSLRIIIKKLP-FSSCYSLTMHDI 561
           +  ++       + +L   + +E       T +     + +    LP       +  +DI
Sbjct: 226 DGSTMPPEEFASVRALKEHRLIENVEMGIVTPDGITTWINVTAAPLPLEDYGVVIAYNDI 285

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           S     +  L    K   + ++    F    SH+++ PL  +IG  +++  +  G L + 
Sbjct: 286 SSRMAAEQALHQTMKELTRSNADLEQFAYVASHDLQEPLRGVIGMLQLLHERYQGRLDS- 344

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
           R  +Y      S N +  ++NDLL  S++E       F  +    A+  A++ +Q+   E
Sbjct: 345 RADQYIALAIDSANRMQALINDLLLFSRVERRNQI--FTQMDAAAALEHAMANLQVVIQE 402

Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG-GQIIISTTHTSNEEVILR 740
               I       +P+I AD   + Q+  N+LSNAI F      +I IS    SN  V   
Sbjct: 403 SGAEITYD---PLPQIYADSTQITQLFQNLLSNAIKFRDEAPPRIHISAQRRSNAWV-FA 458

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           VRD G+G+    +E+    F ++    +    GTG+GL + K +V+ + G+ ++ S    
Sbjct: 459 VRDNGIGIAPDHVERIFIIFQRLHP--RQAYPGTGIGLAICKKIVERHGGQIWVNSHLGH 516

Query: 801 GTLIEIIFP 809
           G       P
Sbjct: 517 GATFFFTIP 525



 Score = 43.1 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 20/197 (10%), Positives = 49/197 (24%), Gaps = 16/197 (8%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI-GDLLKRQNTWYGKTTL- 149
            G    ++         +  +MIG  + ++              +L   Q T   + +  
Sbjct: 66  DGRFLFVNPRAAAMFDLHPEEMIGRYVEEILPPEIAQVYQERTRELFALQITHEYERSFT 125

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
            P+    L++   + A                  +          A  +    K+  L +
Sbjct: 126 LPLSERTLFISNQILATSQGDA--------LLSSLVDISTRTRVEAELRVALTKYRTLFD 177

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
                 +V      I    +      M  ++  + +   H   +   E   +     +  
Sbjct: 178 AMPLGITVSDHTGQIVESNA------MAERLLGIGKEEHHHRQIDGVEWRIVRPDGSTMP 231

Query: 270 PEQEDFHTINLNQYTKK 286
           PE+             +
Sbjct: 232 PEEFASVRALKEHRLIE 248


>gi|164686079|ref|ZP_01947585.2| putative aerobic respiration control sensor protein arcB [Coxiella
           burnetii 'MSU Goat Q177']
 gi|212219130|ref|YP_002305917.1| two component system histidine kinase [Coxiella burnetii CbuK_Q154]
 gi|164601638|gb|EAX31792.2| putative aerobic respiration control sensor protein arcB [Coxiella
           burnetii 'MSU Goat Q177']
 gi|212013392|gb|ACJ20772.1| two component system histidine kinase [Coxiella burnetii CbuK_Q154]
          Length = 551

 Score =  303 bits (775), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 92/362 (25%), Positives = 166/362 (45%), Gaps = 11/362 (3%)

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRKPFTVFLEQNTPSVMNHY 512
           L +IL      I   +R  + L  N   +KL G+   E I+ K           + +   
Sbjct: 45  LENILYNIPQYILWKDRNFVYLGCNHNFAKLVGFETPESIIGKTDFDLWRSQGANSIRPT 104

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNK 570
             E+L       +E+       +E +  +  ++ +   +      +   DI+E KQ + K
Sbjct: 105 DVEVLEGKQLVDVEQSLSLPNGKEGVFLISKVLLRDERNEIIGILVVGTDITERKQNEQK 164

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           L  AK  AE     KS+F+A +SH++RTP+  I+G +++           P      N +
Sbjct: 165 LIEAKLQAELSDRAKSEFIANISHDLRTPINGILGIAQIFNMHEHTKKQEP----LINDL 220

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
             S NL+L +V D+LD +++E GK+ L +   +L + V   +        +K+I I   +
Sbjct: 221 SASANLLLGLVEDILDFARLEVGKLELKYSTFNLRQLVIFLVKTFSFQTQQKQIKINVYY 280

Query: 691 ANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN--EEVILRVRDTGVG 747
             ++P  I+++   +++I LN++ NA+ FT  G QI ++     N    + + V+DTG+G
Sbjct: 281 DASLPDSIVSEPNYIRRIFLNLIGNAVKFTEKG-QIDVTVNLEGNKPAMLKILVKDTGLG 339

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           +   +L      F +       R EG GLGL + K +VD   G+ ++ S   +G+   + 
Sbjct: 340 IPKDKLNTIFDRFSRATPVYSSRYEGLGLGLSIIKRLVDNLGGEVHVSSIENEGSTFTLT 399

Query: 808 FP 809
            P
Sbjct: 400 IP 401


>gi|229047322|ref|ZP_04192921.1| hypothetical protein bcere0027_33100 [Bacillus cereus AH676]
 gi|228724064|gb|EEL75410.1| hypothetical protein bcere0027_33100 [Bacillus cereus AH676]
          Length = 510

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 97/523 (18%), Positives = 195/523 (37%), Gaps = 39/523 (7%)

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDD 359
            + +                +     +  P     +   G + + NPS   +  Y S++ 
Sbjct: 13  RHPNISRRLRNHIQDRSLTEMYASLFEHNPDSIISLNLEGVILHINPSAERILGYTSLE- 71

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
           +E     S L       + +  + V+    +         + +I       L +      
Sbjct: 72  LEQKNITSIL-------EAHISEQVLQNIKNTEADNQQEYILSIYHKNGFLLDVVTKLVP 124

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
              Q         ++P +   RI    ++    +L +++ +    +   + EG  L  N 
Sbjct: 125 IFVQNRLTGVYAIMKPLEKSERIENI-LKESEKRLRTLVNSMPAFVIFKDHEGRWLEAND 183

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMN----HYLTEILSLDLRQTLEKITLGSTKE 535
                F +       K  +  ++ N            + E+     RQ L        ++
Sbjct: 184 YALSCFNFHHVPYHGKKDSELIQYNEAYREAFLHCEEIDELAWQ-QRQILHGEEFIIHRD 242

Query: 536 EKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
           +  L L I    L           +   D++E K+ +  L  ++K+A           A 
Sbjct: 243 DFDLILSISKVPLYHPDGSRKGLIVMGRDVTELKETEKLLRKSEKLAVV-----GQLTAG 297

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           ++HEIR PLT++ GF  ++      P  N     Y + +    + +  I +  + +SK +
Sbjct: 298 IAHEIRNPLTSLKGFLTLLL-----PEINEEQKWYIDVMLSEISQMESITSQFMAMSKPQ 352

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
                L  +  ++   + E ++ +   A    + I     + +  I  D   +KQ+ +NI
Sbjct: 353 ----VLSIQTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYVYDIQCDGNQLKQVFINI 408

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           L NAI   P+GG I I T    +  +++R+ D G G+    + +  +PF        ++ 
Sbjct: 409 LKNAIEAMPNGGNIFIQTKPLEDNFILIRIIDEGCGIPEDRISRLGEPFY------SLKE 462

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           +GTGLGL +   +++ + GK +I S   KGT+++I  PL  + 
Sbjct: 463 KGTGLGLMMCYKIIEEHHGKLHISSELNKGTIVDIELPLSSSH 505


>gi|30021739|ref|NP_833370.1| sensor protein atoS [Bacillus cereus ATCC 14579]
 gi|229146207|ref|ZP_04274582.1| hypothetical protein bcere0012_33520 [Bacillus cereus BDRD-ST24]
 gi|296504142|ref|YP_003665842.1| sensor protein AtoS [Bacillus thuringiensis BMB171]
 gi|29897294|gb|AAP10571.1| Sensor protein atoS [Bacillus cereus ATCC 14579]
 gi|228637266|gb|EEK93721.1| hypothetical protein bcere0012_33520 [Bacillus cereus BDRD-ST24]
 gi|296325194|gb|ADH08122.1| sensor protein atoS [Bacillus thuringiensis BMB171]
          Length = 510

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 97/523 (18%), Positives = 195/523 (37%), Gaps = 39/523 (7%)

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDD 359
            + +                +     +  P     +   G + + NPS   +  Y S++ 
Sbjct: 13  RHPNISRRLRNHIQDRSLTEMYASLFEHNPDSIISLNLEGVILHINPSAERILGYTSLE- 71

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
           +E     S L       + +  + V+    +         + +I       L +      
Sbjct: 72  LEQKNITSIL-------EAHISEQVLQNIKNTEADNQQEYILSIYHKNGFLLDVVTKLVP 124

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
              Q         ++P +   RI    ++    +L +++ +    +   + EG  L  N 
Sbjct: 125 IFVQNRLTGVYAIMKPLEKSERIENI-LKESEKRLRTLVNSMPAFVIFKDHEGRWLEAND 183

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMN----HYLTEILSLDLRQTLEKITLGSTKE 535
                F +       K  +  ++ N            + E+     RQ L        ++
Sbjct: 184 YALSCFNFHHVPYHGKKDSELIQYNEAYREAFLHCEEIDELAWQ-QRQILHGEEFIIHRD 242

Query: 536 EKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
           +  L L I    L           +   D++E K+ +  L  ++K+A           A 
Sbjct: 243 DFDLILSISKVPLYHPDGSRKGLIVMGRDVTELKETEKLLRKSEKLAVV-----GQLTAG 297

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           ++HEIR PLT++ GF  ++      P  N     Y + +    + +  I +  + +SK +
Sbjct: 298 IAHEIRNPLTSLKGFLTLLL-----PEINEEQKWYIDVMLSEISQMESITSQFMAMSKPQ 352

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
                L  +  ++   + E ++ +   A    + I     + +  I  D   +KQ+ +NI
Sbjct: 353 ----VLSIQTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYVYDIQCDGNQLKQVFINI 408

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           L NAI   P+GG I I T    +  +++R+ D G G+    + +  +PF        ++ 
Sbjct: 409 LKNAIEAMPNGGNIFIQTKPLEDNFILIRIIDEGCGIPEDRISRLGEPFY------SLKE 462

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           +GTGLGL +   +++ + GK +I S   KGT+++I  PL  + 
Sbjct: 463 KGTGLGLMMCYKIIEEHHGKLHISSELNKGTIVDIELPLSSSH 505


>gi|237746076|ref|ZP_04576556.1| two-component system sensor histidine kinase [Oxalobacter
           formigenes HOxBLS]
 gi|229377427|gb|EEO27518.1| two-component system sensor histidine kinase [Oxalobacter
           formigenes HOxBLS]
          Length = 790

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 100/496 (20%), Positives = 188/496 (37%), Gaps = 43/496 (8%)

Query: 334 FVYSHGNLFYANPSFLLLTKYKSVDDIEIAG--GLSTLLDAPKLSDNNAIKPVMLYRSDR 391
            +  H  + + N  +   T Y   +              D P +      + +    +  
Sbjct: 20  LLDEHFTVLWGNDYYYSRTGYTREEYETRFHNRVSEHYRDDPGMLRQIGDRILAARDAGE 79

Query: 392 TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV 451
                   +  +       + +  I                +  +  D    +++     
Sbjct: 80  KRYEV---VCRMPQKDGAYIWIKIIGTFTDEFVGGKQVIYCVFADITDLVRAQQE----- 131

Query: 452 MQLCSI-LEATSDGIAIINREGI----ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
               ++  ++    +A            +  N      FG   E     P          
Sbjct: 132 ---RTVAFDSLPGFVARFRMRKNGMPEFIGANERFVAFFGKRPEQGSPCPLYRLDIPENR 188

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII---IKKLPFSSCYSLTMHDISE 563
                 +  +   +  + + +      ++ +   L++    I ++     Y +   DI++
Sbjct: 189 EAFAENMPLMQKGEPVRFVIRE---KNRQGEDAWLQLNAECIDRIADDPVYLVIYLDITD 245

Query: 564 -------WKQEKNKLSHAK---KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
                   K+ + + +  +   ++AE+ +  KSDFLAR+SH+IRTP+ AI G   + ++ 
Sbjct: 246 VTELRDLQKKLEERTAMLRNALEMAERANQVKSDFLARMSHDIRTPMNAITGLISIARDC 305

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
              P+   +  E  N ++ S   +L ++ND+LD+SKIESG+M L     S    + + +S
Sbjct: 306 VNDPV---KIRECLNKLEFSSGSLLSLINDILDMSKIESGRMELKKREFSFVAFIDDIVS 362

Query: 674 LVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIST--- 729
            V   A +KRI      A N+  +   D   +KQI  N+LSNAI FT SGG++ +     
Sbjct: 363 AVYAQAQKKRIGFHVEIAENVRELYSGDALKLKQIVSNLLSNAIKFTDSGGRVELQVEEG 422

Query: 730 -THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                  E++  V D G+GM    +E+   PF Q     +    G+GLGL +  + V   
Sbjct: 423 QRIKRTCELVFTVSDNGIGMEPDVIERVFLPFEQ-DVRHRENRGGSGLGLAIVHSYVQLM 481

Query: 789 MGKFYIFSTPAKGTLI 804
            G+  + S P KG+  
Sbjct: 482 NGRVDVESEPGKGSRF 497


>gi|77362202|ref|YP_341776.1| putative two-component hybrid sensor and regulator [Pseudoalteromonas
            haloplanktis TAC125]
 gi|76877113|emb|CAI89330.1| putative two-component hybrid sensor and regulator [Pseudoalteromonas
            haloplanktis TAC125]
          Length = 1585

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 118/793 (14%), Positives = 246/793 (31%), Gaps = 84/793 (10%)

Query: 87   WNIDAHGYLKEISEELPKTIGNYAFKM---IGMRLCDVSDILHIDPNNHIGDLLKRQNT- 142
            W ID  G +   +    + IG    ++   +       +    +  +    +      T 
Sbjct: 510  WYIDT-GKVT-FNHRWAEIIGYTLDELGPAVIGTWYKYAHPDDLIVSEQKLNAHFSGETN 567

Query: 143  -WYGKTTLWPIEGTNLYVPIDLAALPI-YSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
             +  +  +   +G   +V I   A  + ++ +      R  G               +  
Sbjct: 568  YYVNEARMKHKQGH--WVWILDTAKVVEWNDDGSPK--RMIGTHLDITEQKATELELQNS 623

Query: 201  DKKFSHLHEIKKG---------HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD 251
              +F+ L     G           ++                  ++NK  S  E     D
Sbjct: 624  RDQFASLVGNIPGIIYRCKYDKVWTMLYMSKQTKELTGYDAEAILENKQLSYLEIIYSDD 683

Query: 252  DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
                 +       E +    +    T         +    + +               + 
Sbjct: 684  RDDIEKTIIKCIDEHTPWSVEYRIITQGNEVRWVNEKGQAIYDTDGNVLYLDGFILDITE 743

Query: 312  SAYFDEGENLTPETVDKC----PIPFF-VYSHGNLFYANPSFLLL--TKYKSVDDIE--- 361
                          ++       I  + +       Y +     +         DI    
Sbjct: 744  RYQAQLKITRQQSLLESMSKQGQIGAWEIDLKAQTLYWSDEVRAIHEVPQSYSPDIATAI 803

Query: 362  -------IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
                       ++ L ++   S  +    +++           +   +   N +      
Sbjct: 804  NHYKEGYHRDKINALFESAISSGKSWNIELIIVTYTGQERWVKSIGQSEFENGQCIRVFG 863

Query: 415  FIPFEKANQFPENM-----PQNGIEPEDVDTRINKRKMEIEVMQLC-----SILEATSDG 464
                  A++  E         N            +     EV +L       +L+     
Sbjct: 864  SFQSIDAHKRLELESEKANRYNKSLAMLTVAPEVQSSDVAEVKKLAVKSMCEVLDVQRAS 923

Query: 465  IAIIN--REGIILS-----------TNR--AVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
            I I N  R+ +I              N   +      Y  E I ++      +       
Sbjct: 924  IWIFNEQRDLMICHSLNIQGQGVDCCNAQLSAEDYPAY-YEAIYKQNLIAIDDVYNHPAT 982

Query: 510  NHYLTEILS-LDLRQTLEKITLGSTKE---------EKLLSLRIIIKKLPFSSCYSLTMH 559
              ++       +++  L+ +                 +        +    S    +   
Sbjct: 983  VDFIEHYAKPNNIKSMLDAVITTGDGNLGILCAETVGEFRQWTQSEETYLRSLATLVGST 1042

Query: 560  DISEW-KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
             +S+  KQ   +L  A  +A++    KS FLA +SHEIRTP+  ++G  E+I+ ++    
Sbjct: 1043 LVSQRRKQTAEELKIALVLAKEAGVAKSQFLATMSHEIRTPMNGVLGMLELIQLEQLPKP 1102

Query: 619  GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
               +          S + +L ++ND+LD SK E+GK+ L     +  + + E  +   L 
Sbjct: 1103 IETK----VAIAKTSAHSLLGVINDILDFSKAEAGKIELESINFNARDLIGEVAAAQALT 1158

Query: 679  ANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIIST---THTSN 734
            A  K I I        P ++  D   ++Q+  N+LSNA+ FT  G ++++S       + 
Sbjct: 1159 AQNKGIEIILDLVALEPSQLSGDPGRIRQVLTNLLSNAVKFTNEG-EVVVSASIERIEAQ 1217

Query: 735  EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
              + + V+D+G+G++  + ++   PF Q+  S      GTGLGL ++K + +   G   I
Sbjct: 1218 LMLQVSVKDSGIGISKEKQQQLFAPFMQVDASTTREYGGTGLGLAISKQLCELMGGAITI 1277

Query: 795  FSTPAKGTLIEII 807
             S   +G+   + 
Sbjct: 1278 KSNAGQGSEFIVT 1290



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 31/261 (11%), Positives = 81/261 (31%), Gaps = 18/261 (6%)

Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
           +D+  I       G + + N  F  ++ Y   + I    G +  +           K + 
Sbjct: 375 LDEHAIVAATDLKGTITFVNKKFCEISGYDEHELI----GKNHRILNSGTHPKQFFKEMY 430

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
                             Q    N   +        ++  +      I  +    ++ + 
Sbjct: 431 QTLKQGKVWHGKICNKAKQ---GNLYWVDTTIAPFLDENAKPQSYIAIRTDLTALKLQEI 487

Query: 446 KMEIEVMQLCSILEATSDGI--AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
           ++E    QL  +++ T+ GI    I+  G +   N   +++ GY ++++       + + 
Sbjct: 488 ELEEHKAQLQLVIDTTAVGIWDWYIDT-GKVTF-NHRWAEIIGYTLDELGPAVIGTWYKY 545

Query: 504 NTPSVMNHYLTEILSL--DLRQTLEKITLGSTKEEKLLSLRII--IKKLPFSS---CYSL 556
             P  +     ++ +                 K+   + +     + +            
Sbjct: 546 AHPDDLIVSEQKLNAHFSGETNYYVNEARMKHKQGHWVWILDTAKVVEWNDDGSPKRMIG 605

Query: 557 TMHDISEWKQEKNKLSHAKKI 577
           T  DI+E K  + +L +++  
Sbjct: 606 THLDITEQKATELELQNSRDQ 626



 Score = 93.9 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 60/515 (11%), Positives = 140/515 (27%), Gaps = 42/515 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147
            D  G +  ++++  +  G    ++IG     ++   H       +   LK+   W+GK 
Sbjct: 384 TDLKGTITFVNKKFCEISGYDEHELIGKNHRILNSGTHPKQFFKEMYQTLKQGKVWHGKI 443

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                +G   +V   +A  P    N +   +    I              +    +   +
Sbjct: 444 CNKAKQGNLYWVDTTIA--PFLDENAKPQSY--IAIRTDLTALKLQEIELEEHKAQLQLV 499

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHL------RMKNKVSSLTEYYAHKDDVLKTEK--Y 259
            +                +       +       +   V      YAH DD++ +E+   
Sbjct: 500 IDTTAVGIWDWYIDTGKVTFNHRWAEIIGYTLDELGPAVIGTWYKYAHPDDLIVSEQKLN 559

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ-----NNSKESFEYLSHRNHPSLSAY 314
              + E +    +        +          ++     +  +    +L      +    
Sbjct: 560 AHFSGETNYYVNEARMKHKQGHWVWILDTAKVVEWNDDGSPKRMIGTHLDITEQKATELE 619

Query: 315 FDEGENLTPETVDKCPIPFFVYSHGNL---FYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
                +     V   P   +   +  +    Y +     LT Y +   +E          
Sbjct: 620 LQNSRDQFASLVGNIPGIIYRCKYDKVWTMLYMSKQTKELTGYDAEAILENKQ---LSYL 676

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
               SD+       + +        S     I         +        +     +  +
Sbjct: 677 EIIYSDDRDDIEKTIIKCIDEHTPWSVEYRIIT-QGNEVRWVNEKGQAIYDTDGNVLYLD 735

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATS----DGIAIINREGIILSTNRAVSKLFGY 487
           G   +  +    + K+  +     S+LE+ S     G   I+ +   L  +  V  +   
Sbjct: 736 GFILDITERYQAQLKITRQ----QSLLESMSKQGQIGAWEIDLKAQTLYWSDEVRAIHEV 791

Query: 488 PVED--ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
           P      +      + E      +N      +S      +E I +  T +E+ +     I
Sbjct: 792 PQSYSPDIATAINHYKEGYHRDKINALFESAISSGKSWNIELIIVTYTGQERWVK---SI 848

Query: 546 KKLPFSSC----YSLTMHDISEWKQEKNKLSHAKK 576
            +  F +        +   I   K+ + +   A +
Sbjct: 849 GQSEFENGQCIRVFGSFQSIDAHKRLELESEKANR 883



 Score = 90.9 bits (224), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 34/322 (10%), Positives = 93/322 (28%), Gaps = 18/322 (5%)

Query: 277 TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL----SAYFDEGENLTPETVDKCPIP 332
               N Y          + + +   Y++ R   +         +E +      +D   + 
Sbjct: 447 AKQGNLYWVDTTIAPFLDENAKPQSYIAIRTDLTALKLQEIELEEHKAQLQLVIDTTAVG 506

Query: 333 FFVY--SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390
            + +    G + + N  +  +  Y   +      G       P   D    +  +     
Sbjct: 507 IWDWYIDTGKVTF-NHRWAEIIGYTLDELGPAVIGTWYKYAHPD--DLIVSEQKLNAHFS 563

Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450
                                 +      + N         G   +  + +  + +++  
Sbjct: 564 GETNYYVNEARMKHKQGHWVWILDTAKVVEWNDDGSPKRMIGTHLDITEQKATELELQNS 623

Query: 451 VMQLCSILEATSDGIAI---INREGIILSTNRAVSKLFGYPVEDIL---RKPFTVFLEQN 504
             Q  S++     GI      ++   +L  ++   +L GY  E IL   +  +   +  +
Sbjct: 624 RDQFASLVGNIP-GIIYRCKYDKVWTMLYMSKQTKELTGYDAEAILENKQLSYLEIIYSD 682

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS--LTMHDIS 562
               +   + + +      ++E   +    E + ++ +         +       + DI+
Sbjct: 683 DRDDIEKTIIKCIDEHTPWSVEYRIITQGNEVRWVNEKGQAIYDTDGNVLYLDGFILDIT 742

Query: 563 EWKQEKNKLSHAKKIAEKESSH 584
           E  Q + K++  + + E  S  
Sbjct: 743 ERYQAQLKITRQQSLLESMSKQ 764



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/143 (13%), Positives = 45/143 (31%), Gaps = 15/143 (10%)

Query: 450 EVMQLCSILEATSD---------GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +  +L  +L   ++          +A  + +G I   N+   ++ GY   +++ K   + 
Sbjct: 357 QGAELQVVLRHLAEQKSALDEHAIVAATDLKGTITFVNKKFCEISGYDEHELIGKNHRIL 416

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSL 556
                P      + + L                K+  L  +   I      +     Y  
Sbjct: 417 NSGTHPKQFFKEMYQTLKQGK--VWHGKICNKAKQGNLYWVDTTIAPFLDENAKPQSYIA 474

Query: 557 TMHDISEWKQEKNKLSHAKKIAE 579
              D++  K ++ +L   K   +
Sbjct: 475 IRTDLTALKLQEIELEEHKAQLQ 497


>gi|237509957|ref|ZP_04522672.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei MSHR346]
 gi|235002162|gb|EEP51586.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei MSHR346]
          Length = 1032

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 126/677 (18%), Positives = 233/677 (34%), Gaps = 59/677 (8%)

Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH 233
           +F   +G+ ++H  +      A+G     +          + ++ + +  + + QSP P 
Sbjct: 129 QFDAHQGYAVLHTPQGAPAALAVGIPAPGRS---ASAFAPYLALLETQLLMGNGQSPLPD 185

Query: 234 LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293
            R++    S    Y       + +         S+                 +     + 
Sbjct: 186 DRVEGYSFSPDGTYLSLLWSREDQAPEAFIESHSASGL---IGDAMRGIRYLRDASTIVP 242

Query: 294 NNSKESFEYLSHRNHP--------SLSAYFDEGENLTPETVDKCPIPFF----------- 334
             +     +L     P         +    D    L    V   P+  F           
Sbjct: 243 LRADRRTVWLPPHPDPLTGKPMIRIVQPAIDATGKLFAIYVRSLPLDMFYSNLNDAPAGS 302

Query: 335 ----VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390
               V   GN+   + +        +   + I       L           +  M   SD
Sbjct: 303 TLTIVDRKGNVILGSSNQHGGDGGATASALGI-----RSLGDGFGGLVERYQDGMFVTSD 357

Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR------INK 444
           +        +H   W    + A+              +    +     D +         
Sbjct: 358 QLPGTDWVLVHAYSWK-TIAAALALRFSLVTGLVAGIIVMLWLFAIQFDRKGLIPNYRRA 416

Query: 445 RKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
           +++    +   +IL     G+ +++  +G +L  N A+ +L     ++ L          
Sbjct: 417 QRLLESEVLNRTILRTAPVGLGLLSAQDGSVLLQNNAMLELSARTSDEPLPIRLWEAYRH 476

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                 +               +            L   ++  +   ++    T+ DIS 
Sbjct: 477 AVGRSSDE-------DGALLQHDLAIEREGANPVYLQANVVAARYRGANVLLCTLLDISL 529

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            K+ + KL  A+  A++ +  KS FLA +SHEIRTPL AIIG  E+++        + + 
Sbjct: 530 RKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPL----SEQQ 585

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            E  + ++   N +L I+ND+LD+SK+ESG+M L   P  +   + E +      A  K 
Sbjct: 586 SERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAYAPLAESKG 645

Query: 684 ILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIST----THTSNEEVI 738
           + + +S    + R    D   ++Q+  N++ NAI FT  G  I I             + 
Sbjct: 646 LALLSSIGEGVARHYAGDPTRIRQVLSNLIGNAIKFTERG-HISIDVHRAKAARDGSAIE 704

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           + V DTG+G+    +      + Q   S   R  G+GLGLPL + +V    G   I S P
Sbjct: 705 IWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLP 764

Query: 799 AKGTLIEIIFPLYDTSH 815
             GT + +  PL +  H
Sbjct: 765 DFGTTVTVALPLREARH 781


>gi|172035804|ref|YP_001802305.1| two-component sensor histidine kinase [Cyanothece sp. ATCC 51142]
 gi|171697258|gb|ACB50239.1| two-component sensor histidine kinase [Cyanothece sp. ATCC 51142]
          Length = 678

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 85/428 (19%), Positives = 172/428 (40%), Gaps = 50/428 (11%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINK--RKMEIEVMQLCSILEATSDGIAIINREGIIL 475
                +  E +       + ++    +   ++  E  +L +++    DG  +++    +L
Sbjct: 240 LPFGGELGELIFSFNEMAKRLERYEEQNIEELTAEKAKLDTLVSTIVDGAILLDTHLNLL 299

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL----- 530
             N    ++F +  +D++ +     L     + +   L +++  +  ++ E         
Sbjct: 300 LVNPTARRMFVWEGKDVIGENILQLLPAELTTQLQTPLEQMIQQNATESNESELEKNPET 359

Query: 531 ---------------GSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLS 572
                           S    +++ + +              ++T+ DI+          
Sbjct: 360 TSLQQKISPGEYRISLSQPTSRIVRVLLTQVFDQHRGTLKGIAMTVQDITR--------- 410

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
                  + +  KS F++ VSHE+RTPL  I  F E + ++    L      E+    + 
Sbjct: 411 -----EVELNEAKSQFISNVSHELRTPLFNIKSFIETL-SEFGEDLTETERKEFLETANH 464

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
             + +  +VND+LD+S++ES K   H   V L + + + +   QL A +K +++      
Sbjct: 465 ETDRLTRLVNDVLDLSRLESSK-TYHLNGVDLSQLIEQTLRTYQLNAKDKELVLNKEVEP 523

Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST--------THTSNEEVILRVRDT 744
           N+P IL     + Q+  N++ NA+ FTPSGG I+I                 V + + DT
Sbjct: 524 NLPLILGHYDLLLQVMTNLVGNALKFTPSGGIIVIRAYHFKTKSKQFNDKSCVRVEISDT 583

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G+   +       F ++ N +    EGTGLGL + K ++D +  + ++ S    GT  
Sbjct: 584 GIGIAPEDQAAIFDRFFRVEN-RVHTLEGTGLGLSIVKNIIDKHHSQIHLISEVGIGTTF 642

Query: 805 EIIFPLYD 812
                LY 
Sbjct: 643 WFDLALYQ 650


>gi|281209484|gb|EFA83652.1| histidine kinase [Polysphondylium pallidum PN500]
          Length = 1067

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 82/357 (22%), Positives = 157/357 (43%), Gaps = 21/357 (5%)

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
           +E  +DGI I +  G I   N + +   GY   +IL K F+  +       +   +   +
Sbjct: 314 VEYNNDGIEIWDPNGHIKYLNYSTADSIGYSRWEILGKEFSFLI---DNQEIIPQMWATI 370

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM----HDISEWKQEKNKLSH 573
           +                   L+     +  +  +    +       D ++ + ++   + 
Sbjct: 371 TGGKPW--NGYIRTKHANGALVYFESSVSPVYDTQQKLIYYNCSKRDATQKRIDEEFRTQ 428

Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
            ++   + S  +   L+ +SH+IRTP++ IIG ++++         +P+   Y + I  S
Sbjct: 429 EQERTIETSRLR---LSMMSHDIRTPMSGIIGMTDLLAETEL----HPQQRHYLDIIRAS 481

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693
            N +L+I+NDLLDISKIE+GK+ +        E V +   L+   A  K + +       
Sbjct: 482 SNTLLNIINDLLDISKIEAGKLEIENREFDFRETVEDVCELMGERAQAKALSLMCFVHPT 541

Query: 694 IPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV---ILRVRDTGVGMT 749
           +P+ ++ D   +KQI  N+L N++ FT +G  +++      +E++    + V+DTG+G+ 
Sbjct: 542 VPQNLIGDSSRLKQILNNLLGNSVKFTDNGEILVVCNVANVSEDIVALRIEVKDTGIGIK 601

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA-NMGKFYIFSTPAKGTLIE 805
              L    K F Q   S   +  G+GLGL + K + +    G   + S    G+   
Sbjct: 602 KEALPLLFKAFTQAEGSIARQYAGSGLGLAICKELANLAFNGDIGVESQYGVGSTFW 658



 Score = 48.1 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/262 (10%), Positives = 72/262 (27%), Gaps = 11/262 (4%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            W  D +G++K ++     +IG   ++++G     + D   I P   +   +     W G
Sbjct: 323 IW--DPNGHIKYLNYSTADSIGYSRWEILGKEFSFLIDNQEIIP--QMWATITGGKPWNG 378

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
                   G    V  + +  P+Y   ++   +                    +  ++  
Sbjct: 379 YIRTKHANG--ALVYFESSVSPVYDTQQKLIYYN--CSKRDATQKRIDEEFRTQEQERTI 434

Query: 206 HLHEIKKGHSSVE--KEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
               ++    S +       I           +  +     +      + L      LL 
Sbjct: 435 ETSRLRLSMMSHDIRTPMSGIIGMTDLLAETELHPQQRHYLDIIRASSNTLLNIINDLLD 494

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
             +    + E  +     + T +     +   ++     L    HP++        +   
Sbjct: 495 ISKIEAGKLEIENREFDFRETVEDVCELMGERAQAKALSLMCFVHPTVPQNLIGDSSRLK 554

Query: 324 ETVDK-CPIPFFVYSHGNLFYA 344
           + ++           +G +   
Sbjct: 555 QILNNLLGNSVKFTDNGEILVV 576


>gi|150018743|ref|YP_001310997.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           beijerinckii NCIMB 8052]
 gi|149905208|gb|ABR36041.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           beijerinckii NCIMB 8052]
          Length = 920

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 85/425 (20%), Positives = 180/425 (42%), Gaps = 19/425 (4%)

Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
             I  + +++    F      ++  E      I  +  +    ++ ++ +     +IL+ 
Sbjct: 464 RIIIKHGDDASYFDFNATPVFDEIGEVSLGIIINRDVTEQVNYEKHIKEQKELFEAILDN 523

Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDI-LRKPFTVFLEQNTPSVMNHYLTEILSL 519
             + I + ++ G  +  N+   K F    +++      T   +     +           
Sbjct: 524 MQESIYVFDKNGKYIIKNKVARKRFSGEFKELGEGYKVTELYDLEGNKMPIDETPIYRVK 583

Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHAK 575
                   I      + +  ++ I    +  +S       ++  D+++  + +  L   +
Sbjct: 584 SGEIVRNNIVKFKKDDMEYYNI-ISGTPIYDNSGDFLYGVVSFLDVTDMIKSQQDLQEVQ 642

Query: 576 KIA-----------EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           +             E+    K +FL+ +SHE RTPL  I    + + N  +      +  
Sbjct: 643 EKLLAVEREKNEGLEQAMEMKDEFLSFISHEFRTPLNVINTAIQTL-NLVYSNQMTEKIK 701

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
            Y   I ++ N  L +VN++LDI+++ +G++ ++ + + +          V  +A++K +
Sbjct: 702 AYMGTIKQNTNRQLRLVNNILDITRVNAGRITINKKNIDIVFLTKAITESVYEFASKKGV 761

Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744
            +          I  D    ++I LN+LSNAI FTP+G  II++  H++   + + V+D 
Sbjct: 762 RLTFVSKLTKKIIGVDDEKYERIILNLLSNAIKFTPAGKSIIVNL-HSAKTNICIEVKDN 820

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G+   +++   + FGQ+ +S   + EGTG+GL L K  V+A  G   + S   KGT  
Sbjct: 821 GIGIPRNKIDVIFERFGQVESSLSRQAEGTGIGLSLVKRFVEALGGSVSVKSNLGKGTTF 880

Query: 805 EIIFP 809
           +I+ P
Sbjct: 881 KILLP 885



 Score = 70.4 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/199 (13%), Positives = 69/199 (34%), Gaps = 16/199 (8%)

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV-------MQL---CSI 457
           E  +           +         I  +  +  +++++ME +         QL    ++
Sbjct: 195 ERGVTYWEASLAPVFEDGILKYCIEITTDITEKVLDRKRMEEQTKVIKKQNEQLMMQANL 254

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
           L  + D I      G I+  N+   + +GY  E+ +       L+   P   +   + +L
Sbjct: 255 LNLSYDAILAWEINGSIIYWNKGAEEKYGYNSEEAIGSISYELLKTTFPISFSSIKSTLL 314

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM---HDISEWKQEKNKLSHA 574
           S               K+   L +   ++ +   +   + +    DI+E K+ + +L   
Sbjct: 315 SDG---IWHAEIEQIKKDGSKLLVETRLQLIVDENGKQIVLETNRDITENKKMEKELQIQ 371

Query: 575 KKIAEKESSHKSDFLARVS 593
            +I +++       +  ++
Sbjct: 372 NQIIKQQKEELEIIIDNMA 390



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/304 (8%), Positives = 85/304 (27%), Gaps = 46/304 (15%)

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIA 363
                 +    +E   +    ++        +  +G++ Y N        Y S + I   
Sbjct: 234 MEEQTKVIKKQNEQLMMQANLLNLSYDAILAWEINGSIIYWNKGAEEKYGYNSEEAIGSI 293

Query: 364 ---------GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
                        + + +  LSD      +   + D + +    RL  I       + + 
Sbjct: 294 SYELLKTTFPISFSSIKSTLLSDGIWHAEIEQIKKDGSKLLVETRLQLIVDENGKQIVL- 352

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV-------MQLCSILEATSDGIAI 467
                                +  + +  +++++I+         +L  I++  +DG+ +
Sbjct: 353 -----------------ETNRDITENKKMEKELQIQNQIIKQQKEELEIIIDNMADGLTV 395

Query: 468 INREGIILSTNRAVSKLFG--------YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL 519
           ++  G    TN+ V +                   +   ++ ++    +       +  +
Sbjct: 396 VDNCGKYRRTNKRVEEYTKKFTSLDKPVDKVGDSFESGEIYYDEKGKCISLEDFPSMKVI 455

Query: 520 DLRQTLEKITLGSTKEE-KLLSLRIIIKKLPFSSCYSLTM--HDISEWKQEKNKLSHAKK 576
              +   +  +    ++                      +   D++E    +  +   K+
Sbjct: 456 RGEKVKNQRIIIKHGDDASYFDFNATPVFDEIGEVSLGIIINRDVTEQVNYEKHIKEQKE 515

Query: 577 IAEK 580
           + E 
Sbjct: 516 LFEA 519


>gi|254412597|ref|ZP_05026370.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
 gi|196180332|gb|EDX75323.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
          Length = 1116

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 76/243 (31%), Positives = 123/243 (50%), Gaps = 3/243 (1%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L       ++    K +FLA  SHE++TPL  IIG +E + +   G L +       + 
Sbjct: 430 ELETKNTALQRLDQLKDEFLANTSHELKTPLNGIIGIAESLMDGVTGNLSDAT-RFNLSL 488

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I  SG  +  +VNDLLD S+++   + L+ +PV + E     +++ Q    +K I +   
Sbjct: 489 IVSSGRRLHQLVNDLLDFSQLKHHNLQLNIKPVGIREVTHVVLTISQPLVGKKPIELING 548

Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749
              +IP + AD   V+QI  N++SNAI FT  G  I +S T   N+ + + V DTG+G++
Sbjct: 549 INPDIPPVDADENRVQQILYNLVSNAIKFTEQG-TIEVSATPV-NDRLEIHVVDTGIGIS 606

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             ++ +  + F Q   S      GTGLGL + K +V+ + G   + STP  G+      P
Sbjct: 607 PDKINRIFESFEQADGSITRHYGGTGLGLAITKQLVELHGGIIKVDSTPGVGSRFTFTLP 666

Query: 810 LYD 812
           L  
Sbjct: 667 LSQ 669


>gi|229191724|ref|ZP_04318702.1| hypothetical protein bcere0002_33840 [Bacillus cereus ATCC 10876]
 gi|228591770|gb|EEK49611.1| hypothetical protein bcere0002_33840 [Bacillus cereus ATCC 10876]
          Length = 510

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 97/523 (18%), Positives = 195/523 (37%), Gaps = 39/523 (7%)

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDD 359
            + +                +     +  P     +   G + + NPS   +  Y S++ 
Sbjct: 13  RHPNISRRLRNHIQDRSLTEMYASLFEHNPDSIISLNLEGVILHINPSAERILGYTSLE- 71

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
           +E     S L         +  + V+    +         + +I       L +      
Sbjct: 72  LEQKNITSIL-------GAHISEQVLQNIKNTEADNQQEYILSIYHKNGFLLDVVTKLVP 124

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
              Q         ++P +   RI +  ++    +L +++ +    +   + EG  L  N 
Sbjct: 125 IFVQNRLTGVYAIMKPLEKSERI-ENMLKESEKRLRTLVNSMPAFVIFKDHEGRWLEAND 183

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMN----HYLTEILSLDLRQTLEKITLGSTKE 535
                F +       K  +  ++ N            + E+     RQ L        ++
Sbjct: 184 YALSCFNFHHVPYHGKKDSELIQYNEAYREAFLHCEEIDELAWQ-QRQILHGEEFIIHRD 242

Query: 536 EKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
           +  L L I    L           +   D++E K+ +  L  ++K+A           A 
Sbjct: 243 DFDLILSISKVPLYHPDGSRKGLIVMGRDVTELKETEKLLRKSEKLAVV-----GQLTAG 297

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           ++HEIR PLT++ GF  ++      P  N     Y + +    + +  I +  + +SK +
Sbjct: 298 IAHEIRNPLTSLKGFLTLLL-----PEINEEQKWYIDVMLSEISQMESITSQFMAMSKPQ 352

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
                L  +  ++   + E ++ +   A    + I     + +  I  D   +KQ+ +NI
Sbjct: 353 ----VLSIQTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYVYDIQCDGNQLKQVFINI 408

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           L NAI   P+GG I I T    +  +++R+ D G G+    + +  +PF        ++ 
Sbjct: 409 LKNAIEAMPNGGNIFIQTKPLEDNFILIRIIDEGCGIPEDRISRLGEPFY------SLKE 462

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           +GTGLGL +   +++ + GK +I S   KGT+++I  PL  + 
Sbjct: 463 KGTGLGLMMCYKIIEEHHGKLHISSELNKGTIVDIELPLSSSH 505


>gi|85058198|ref|YP_453900.1| aerobic respiration control sensor protein ArcB [Sodalis
           glossinidius str. 'morsitans']
 gi|84778718|dbj|BAE73495.1| aerobic respiration sensor-response protein [Sodalis glossinidius
           str. 'morsitans']
          Length = 808

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 83/397 (20%), Positives = 163/397 (41%), Gaps = 16/397 (4%)

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
           +   +  +         +  E       + ++E +   L S L+A+ D +   N      
Sbjct: 119 MADREKAEEARRRAMEKLTEEMARREQAQIELEQQSSLLRSFLDASPDLVYYRNENKEFS 178

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
             NRA   L G   + ++               +     ++   ++  T E+        
Sbjct: 179 GCNRATELLTGKSEKQLVGLTPRDVYSPEIAEKVIETDEKVFRHNVSLTYEQWLEYPDGR 238

Query: 536 EKLLSLRIII--KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
           +    LR +    ++           DI+E K+        +   E  S  K+ F++ +S
Sbjct: 239 KACFELRKVPFYDRIGKRHGLMGFCRDITERKR-------YQDALESASREKTTFISTIS 291

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HE+RTPL  I+G S ++ + +           Y   I  S   +  I ND++++ K+E  
Sbjct: 292 HELRTPLNGIVGLSRILLDTQL----TEEQHNYLKTIHVSAVTLGYIFNDIIEMDKLERR 347

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNIL 712
           K+ L  +P+   + + +  +L  L    K + +  +    +PR I+AD   ++QI  N++
Sbjct: 348 KVRLDNQPLDFTDFLMDLKNLSGLLVQPKGLKLVMAPRQPLPRSIIADGTRLRQILWNLI 407

Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-G 771
            NA+ FT  G +I+I       + +   V+D+G+G+ + E EK    + Q+      +  
Sbjct: 408 GNAVKFTRQG-EIVIRIWREQADHLCFDVQDSGIGIPDEEQEKIFAMYYQVKGQHGGKPA 466

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            GTG+GL ++K +  A  G   + S P +G+   +  
Sbjct: 467 TGTGIGLAVSKRLAQAMDGDITVKSHPGQGSCFTLTI 503



 Score = 46.2 bits (108), Expect = 0.026,   Method: Composition-based stats.
 Identities = 21/226 (9%), Positives = 51/226 (22%), Gaps = 10/226 (4%)

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
           +S + E        L      L       L               +       +   + +
Sbjct: 73  LSVVVEQLEASRQRLSRLVDKLEEMRNRDLQLNAQLQNNIAQLNQEMADREKAEEARRRA 132

Query: 300 FEYL--SHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKS 356
            E L              ++  +L    +D  P   +    +      N +  LLT    
Sbjct: 133 MEKLTEEMARREQAQIELEQQSSLLRSFLDASPDLVYYRNENKEFSGCNRATELLTGKSE 192

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
              +        L      S   A K +           +      +++           
Sbjct: 193 KQLVG-------LTPRDVYSPEIAEKVIETDEKVFRHNVSLTYEQWLEYPDGRKACFELR 245

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
                ++  +     G   +  + +  +  +E    +  + +   S
Sbjct: 246 KVPFYDRIGKRHGLMGFCRDITERKRYQDALESASREKTTFISTIS 291


>gi|330718003|ref|ZP_08312603.1| PAS/PAC sensor signal transduction histidine kinase [Leuconostoc
           fallax KCTC 3537]
          Length = 621

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 80/399 (20%), Positives = 165/399 (41%), Gaps = 40/399 (10%)

Query: 424 FPENMPQNGIEPEDVDTRINK--RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
             + + Q  I   ++ TR+ +    +  E  +L S+L   +DG+   NR G I   N+A 
Sbjct: 234 GVDELSQLAISVNELSTRVEESTEAVNSERNRLDSVLTHMADGVLAANRRGEITIINQAA 293

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
           +   G   E+ L       L       +   L  +         +   +  + +   L +
Sbjct: 294 ANFVGKTPEEALGSNVIDLLHLQGKRKLRDMLENL---------DDFLIDLSDDSHDLLV 344

Query: 542 RIIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
           +  +  +   S +     + +HDI+E ++  ++                 F++ VSHE+R
Sbjct: 345 QAYVSLIKRQSGFISGLVVVLHDITEQQRIDSERRM--------------FVSNVSHELR 390

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TPLT++  + + + +             +   +      ++ ++NDLL++S+++ G M +
Sbjct: 391 TPLTSVRSYVDALADGAID--DPEMSHNFLGVVQDETQRMIRMINDLLELSRLDQGTMEV 448

Query: 658 HFEPVSLDEAVSEAISLVQLYANE--------KRILIRTSFANNIPRILADLRSVKQIAL 709
             E V+L+   +  +    +            K+  I+  F      +  D     Q+  
Sbjct: 449 KLEIVNLNSLFNFVLDRFDMILENDAKKDNGNKQYKIQREFTKQDVWVEVDPDKFTQVLD 508

Query: 710 NILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
           NI++NA+ ++P GG I       +    IL + D G+G+   +L+     F ++  S+  
Sbjct: 509 NIMNNAVKYSPDGGTITARL-IKTKTRAILSISDEGLGIPRKDLDNIFNRFFRVDKSRSR 567

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
              GTGLGL ++K +V+   G+ ++ S   +G+   I  
Sbjct: 568 AQGGTGLGLAISKEVVEKFKGRIWVDSVENRGSTFYISL 606


>gi|258513414|ref|YP_003189636.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257777119|gb|ACV61013.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 871

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 120/790 (15%), Positives = 256/790 (32%), Gaps = 83/790 (10%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D      EI+++  KT G    + + M+  D+ D       N I   +   + +  +T  
Sbjct: 89  DCDFNFIEINDKAIKTYGYSHKEFLKMKFHDLIDHNKCPQFNEICKKIDSYHGYIYETVH 148

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK----------- 198
              +G+    P+++++ PI +  +++       I+    V        +           
Sbjct: 149 QRKDGSTF--PVEISSRPIIAGRKKYYH----SIIRDITVRKQVEDQLRQANLDLNTKIK 202

Query: 199 ---RLDKKFSHLHEIKK-GHSSVEKEKYDIFSQQSPPP---HLRMKNKVSSLTEYYAHKD 251
                ++KF+          S    +                   +  +          +
Sbjct: 203 ELLHSEEKFNKAFHASPVIMSISTLKDGRYMEINDSFVRLHGYSREEIIGRTALEIGAWN 262

Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL---QNNSKESFEYLSHRNH 308
           D    +    L +E+  +   E  +     +         L                 + 
Sbjct: 263 DPCDRDIVAQLLNEQGYVKNLEVNYFTKARELHTGLLSIELINFGGEQCLIAIMHDITDL 322

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKY----------KSV 357
                   + +      ++  P     +       Y NP+    T            + +
Sbjct: 323 KRTEKQLQQSKQELTTLLENIPDIISRFDRNLRYLYVNPAVTQATGLHQNCFIGKTNRDL 382

Query: 358 DDIEIA-----------------GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400
           D  E                     +           +   + +          +     
Sbjct: 383 DMPEEQVHIWNRALEKVFMTGKNHIIEFYYQLADKQKHFESRLIPENSPQGEVESVLVIC 442

Query: 401 HTIQWNRENSLAMT-----FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
             I   +E    +T                       ++ E ++    +  ++    +  
Sbjct: 443 RNITMRKEMEHRLTTYQEQLENMVYKRTLALKKSNEQLKQEIIERLQAETALQQSERKYR 502

Query: 456 SILEATSDGIAIINREGI-----ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
           ++   T+D I +    G      I+  N AV +  GY  E++ +          +  ++ 
Sbjct: 503 ALFNNTNDAILLHGISGNNSFESIIEVNDAVCRRLGYTREELTQLSLADIYAPESRRLLP 562

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI--IIKKLPFSSCYSLTMHDISEWKQEK 568
           + L  IL+   R+ L    +  TK  + + +     +  L         + DI+E K+ +
Sbjct: 563 NILNIILN---RKHLTFEVIHITKTGQKIPVEAASHLFTLNGKKVILSVIRDITERKRAE 619

Query: 569 NKLSHAKKIAEKESSHKS--DFLARVSHEIRTPLTAIIGFSEVIK--NQRFGPLGNPRYI 624
            +L  A++ AE+  +  S     A ++HEI  PL ++    + +   + R G L     I
Sbjct: 620 AELQEARQQAERLQTMASLATMTAGIAHEINQPLNSLKIMVDGLLFWHDRNGTLDENELI 679

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           +    I    + +  I+  +  + + ES     +  P +L+ AV +AI  +        I
Sbjct: 680 DGLKNISAQADRISLIIRRMKALVRHES---PPNLYPCNLNSAVEKAIVTMHAQLLASNI 736

Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI--IISTTHTSNEEVILRVR 742
            +R    N +P +  +   ++++ + +L NAI    +  QI   I  T  S   +IL + 
Sbjct: 737 KLRNILQNPLPPLSGENFGLEEVIVILLVNAIQALNNSRQIDKEILITTRSERYIILEIS 796

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G G+     EK  +PF          G+G GLGL +A  ++ +  G+  + +    GT
Sbjct: 797 DNGSGVPTDLQEKIFEPFFTTK----EVGQGMGLGLSIAHTIITSFHGQISLRTNEKGGT 852

Query: 803 LIEIIFPLYD 812
             ++ FP+Y+
Sbjct: 853 TFQLDFPVYN 862



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 46/119 (38%), Gaps = 5/119 (4%)

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           +L+  +D + + + +   +  N    K +GY  ++ L+  F   ++ N     N    +I
Sbjct: 77  LLKYANDILFLFDCDFNFIEINDKAIKTYGYSHKEFLKMKFHDLIDHNKCPQFNEICKKI 136

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSH 573
              D        T+   K+     + I  + +       Y   + DI+  KQ +++L  
Sbjct: 137 ---DSYHGYIYETVHQRKDGSTFPVEISSRPIIAGRKKYYHSIIRDITVRKQVEDQLRQ 192


>gi|238789735|ref|ZP_04633517.1| Aerobic respiration control sensor protein arcB [Yersinia
           frederiksenii ATCC 33641]
 gi|238722094|gb|EEQ13752.1| Aerobic respiration control sensor protein arcB [Yersinia
           frederiksenii ATCC 33641]
          Length = 778

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 78/374 (20%), Positives = 161/374 (43%), Gaps = 16/374 (4%)

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
                + ++  +   L S L+A+ D +   N        NRA+  L G   + ++     
Sbjct: 142 HREQAQVELGQQSALLRSFLDASPDLVYYRNEANEFSGCNRAMELLTGKSEKQLVGLTPK 201

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII--KKLPFSSCYSL 556
                +    +     ++   ++  T E+  +     +    LR +    ++        
Sbjct: 202 DVYAPDIAEKVMETDEKVFRHNVSLTYEQWLVYPDGRKACFELRKVPFYDRVGKRHGLMG 261

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
              DI+E K+ ++ L +        S  K+ F++ +SHE+RTPL  I+G S ++ +    
Sbjct: 262 FGRDITERKRYQDALEN-------ASRDKTTFISTISHELRTPLNGIVGLSRILLDTEL- 313

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
              +   ++Y   I  S   + +I ND++++ K+E  K+ L  +P+     +++  +L  
Sbjct: 314 ---DSEQLKYLKTIHVSAITLGNIFNDIIEMDKLERRKVQLDNQPIDFTGFMADLENLSG 370

Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
           L    K +         +P  I+ D   ++QI  N++ NA+ FT  G +I++      ++
Sbjct: 371 LLVQPKGLKFIMEPQLPLPEKIITDGTRLRQILWNLIGNAVKFTQQG-KIVVRVRREGSD 429

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ-IRGEGTGLGLPLAKAMVDANMGKFYI 794
            +I  V D+G+G+   E +K    + Q+ +S       GTG+GL ++K +  +  G   +
Sbjct: 430 RLIFEVEDSGMGIPEDEQDKIFAMYYQVKDSNGGRPATGTGIGLAVSKRLAQSMGGDITV 489

Query: 795 FSTPAKGTLIEIIF 808
            ST   G+   +  
Sbjct: 490 KSTQGAGSCFTLTI 503



 Score = 41.9 bits (97), Expect = 0.40,   Method: Composition-based stats.
 Identities = 16/124 (12%), Positives = 35/124 (28%), Gaps = 5/124 (4%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN-TWYGKTTLWPIE 153
               +  +    G    +++G+   DV      +      + + R N +   +  L   +
Sbjct: 177 FSGCNRAMELLTGKSEKQLVGLTPKDVYAPDIAEKVMETDEKVFRHNVSLTYEQWLVYPD 236

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
           G       +L  +P Y R  +  G  GFG           +   +   +  +        
Sbjct: 237 GRKACF--ELRKVPFYDRVGKRHGLMGFG--RDITERKRYQDALENASRDKTTFISTISH 292

Query: 214 HSSV 217
               
Sbjct: 293 ELRT 296



 Score = 40.0 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 22/228 (9%), Positives = 52/228 (22%), Gaps = 14/228 (6%)

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ----EDFHTINLNQYTKKQYFGTLQNN 295
           +S + E        L      L       L       E+   +N     +++        
Sbjct: 73  LSVVVEQLEESRQRLSRLVDKLEVMRHRDLELNNQLTENIAQLNQEIVEREKAEKAHLQV 132

Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKY 354
             +  E + H           +   L    +D  P   +           N +  LLT  
Sbjct: 133 VDKLKEEMGH--REQAQVELGQQSALLRSFLDASPDLVYYRNEANEFSGCNRAMELLTGK 190

Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
                +        L      + + A K +           +      + +         
Sbjct: 191 SEKQLVG-------LTPKDVYAPDIAEKVMETDEKVFRHNVSLTYEQWLVYPDGRKACFE 243

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
                  ++  +     G   +  + +  +  +E       + +   S
Sbjct: 244 LRKVPFYDRVGKRHGLMGFGRDITERKRYQDALENASRDKTTFISTIS 291


>gi|162451033|ref|YP_001613400.1| two-component sensor histidine kinase [Sorangium cellulosum 'So ce
           56']
 gi|161161615|emb|CAN92920.1| two-component sensor histidine kinase [Sorangium cellulosum 'So ce
           56']
          Length = 794

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 93/575 (16%), Positives = 192/575 (33%), Gaps = 46/575 (8%)

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
            PL++            + I  +          L            +          +E 
Sbjct: 243 VPLVSGRLFLFGAARGAYPIAASLSLASAITTLLLGAMLWVSAARMNLLDE-ARQRAEEA 301

Query: 319 ENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
                             S  G +   NP+   L  Y++ + I        LL  P+ + 
Sbjct: 302 RAFLATVAQASDDAVIGTSLDGTILSWNPAAERLYGYRASEAIGKKL---PLLCLPERAG 358

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
                   L R +R            +     S+ +        +        + I  + 
Sbjct: 359 EAEAVLARLRRGER----VERFEAVSRTKGGESIDIEVTVSSIVDASGRATGVSTICRDI 414

Query: 438 VDTRINKRKM----EIEVM---QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490
              +  + ++    E E     QL +++E   +   +++ +G ++S N+   +       
Sbjct: 415 GRRKAMEAEVASAHEAERRIRSQLEAVIEQLPEAAILVDAKGRLISCNKLALQY--ASRV 472

Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILS------LDLRQTLEKITLGSTKEEKLLSLRII 544
           +    P+   L     +     L                      L    +  L+ + + 
Sbjct: 473 EDDPDPWGNRLCFEHRTPAGEPLAWDERPLFRALQRGEVVTGAEGLLRRADRGLVPVLVN 532

Query: 545 IKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
             ++              HDIS +K+ +                + +++  ++H++R P+
Sbjct: 533 AAQVRSDDGELQGAVAVFHDISAFKEME--------------RQRQEWIGVIAHDLRQPI 578

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
             I   S+ +  +  G        +  + I  S   +  +++DLLD S+I++ ++ L   
Sbjct: 579 QVIATASQ-LLGRAAGERPVADCRKQLDRITSSIERLRRMIDDLLDASRIDARQLTLDRS 637

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720
           PV+L   + E +             +R     ++P +LAD   ++QI  N+LSNA  +  
Sbjct: 638 PVNLRAQLGEILEKSAEVTAGH--ALRLEVNGDVPAVLADPGRLEQIVTNLLSNAAKYGR 695

Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
             G I+++          + V + G G+    L    K F + P++      G GLGL +
Sbjct: 696 PDGDIVVAVDAGP-GSAHVAVTNWGGGIPEASLPYLFKRFSRAPDAVPRSVRGVGLGLYI 754

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            KA+V+A+ G   + S+P+  T      PL   + 
Sbjct: 755 TKALVEAHGGSISVESSPSGATTFRFSLPLAPDTA 789



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 34/368 (9%), Positives = 87/368 (23%), Gaps = 23/368 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI-DPNNHIGDLLKRQNTWYGKT 147
               G +   +    +  G  A + IG +L  +       +    +  L + +     + 
Sbjct: 319 TSLDGTILSWNPAAERLYGYRASEAIGKKLPLLCLPERAGEAEAVLARLRRGERVERFEA 378

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA-------LGKRL 200
                 G ++ + + +++  I   +   +G     I           A         +R+
Sbjct: 379 VSRTKGGESIDIEVTVSS--IVDASGRATGVS--TICRDIGRRKAMEAEVASAHEAERRI 434

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
             +   + E     + +   K  + S          + +            +       P
Sbjct: 435 RSQLEAVIEQLPEAAILVDAKGRLISCNKLALQYASRVEDDPDPWGNRLCFEHRTPAGEP 494

Query: 261 LLTSEESSLPEQEDF----------HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310
           L   E       +               +            ++++  E    ++  +  S
Sbjct: 495 LAWDERPLFRALQRGEVVTGAEGLLRRADRGLVPVLVNAAQVRSDDGELQGAVAVFHDIS 554

Query: 311 LSAYFDEGENLTPETVDK-CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
                +         +      P  V +  +      +              I   +  L
Sbjct: 555 AFKEMERQRQEWIGVIAHDLRQPIQVIATASQLLGRAAGERPVADCRKQLDRITSSIERL 614

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
                   + +         DR+ +   A+L  I        A   +  E     P  + 
Sbjct: 615 RRMIDDLLDASRIDARQLTLDRSPVNLRAQLGEILEKSAEVTAGHALRLEVNGDVPAVLA 674

Query: 430 QNGIEPED 437
             G   + 
Sbjct: 675 DPGRLEQI 682


>gi|193214209|ref|YP_001995408.1| PAS/PAC sensor hybrid histidine kinase [Chloroherpeton thalassium
           ATCC 35110]
 gi|193087686|gb|ACF12961.1| PAS/PAC sensor hybrid histidine kinase [Chloroherpeton thalassium
           ATCC 35110]
          Length = 627

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 90/506 (17%), Positives = 186/506 (36%), Gaps = 43/506 (8%)

Query: 327 DKCPIPFFVYSHG--NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
           D  P   +VY        + N +++ + K   V++I        +        +     +
Sbjct: 4   DTAPSYLYVYDLEQRRTSWMNKAYVYIFKNI-VNNISNITYRDVIRSVHPDDLHVFYDAL 62

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
              RS+               +        ++   +     E     G   E  + +IN 
Sbjct: 63  QQIRSNLHQQPLRVEYRVKDKSGNYRWVEEWMAAFERTSGGELKRIIGAGHEITERKIN- 121

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
              E+++ +L  I+E +   + I + +G I   N+A  K+ GY  E++  +   V   + 
Sbjct: 122 ---ELQIRKLSKIVEQSPLSVVITDIDGNIEYVNQAFMKVTGYEFEEVKGQNPRVLKTEY 178

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHD 560
           T       L + +S   +           K  +       I  L   +     +     D
Sbjct: 179 TSQEEYKKLWDTISAKKQW--NGEFYNKKKNGEYFWENASICPLLDENGKITHFIGIKED 236

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I+E K+ + +   ++K+              ++H++   LT II  S+++ ++       
Sbjct: 237 ITEKKRMEEERLQSQKM-----EAVGKLAGGIAHDLNNILTVIIANSDLVLSEV---EDG 288

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
               E    I+ +      +V  LL  S+    K  L  + + L++ +S+   +++    
Sbjct: 289 SEAYESVTQIETAAERAAHLVRQLLAFSR----KQILRKKVLDLNKLISDFEKMLR-RII 343

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT---------- 730
            + I++ T+++ N+ R+ AD   ++Q+ +N++ NA    P GG + I T           
Sbjct: 344 GEDIILSTTYSPNLQRVKADPAQIEQVVMNLVINARDAMPMGGHLSIETQNIFIDKEQAK 403

Query: 731 ---HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
                     ++ V DTG GM+    +K  +PF           EG GLGL +   ++  
Sbjct: 404 KYKIDVGYYALIVVSDTGSGMSEEIQKKIFEPFFTTKP----IYEGAGLGLSMVFGVISQ 459

Query: 788 NMGKFYIFSTPAKGTLIEIIFPLYDT 813
           + G   + S   +G   ++  P    
Sbjct: 460 SGGTIRVKSAVNEGATFKVYLPAIQA 485



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/248 (8%), Positives = 58/248 (23%), Gaps = 8/248 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH-IDPNNHIGDLLKRQNTWYGKT 147
            D  G ++ +++   K  G    ++ G     +       +    + D +  +  W G+ 
Sbjct: 142 TDIDGNIEYVNQAFMKVTGYEFEEVKGQNPRVLKTEYTSQEEYKKLWDTISAKKQWNGEF 201

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                 G   Y   + +  P+   N + + F   GI               +  K  +  
Sbjct: 202 YNKKKNGE--YFWENASICPLLDENGKITHF--IGIKEDITEKKRMEEERLQSQKMEAVG 257

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
                    +      I +              +  +                 L +   
Sbjct: 258 KLAGGIAHDLNNILTVIIANSDLVLSEVEDGSEAYESVTQIETAAERAAHLVRQLLAFSR 317

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV- 326
               ++    +N      ++    +           S       +      + +    + 
Sbjct: 318 KQILRKKVLDLNKLISDFEKMLRRIIGEDIILSTTYSPNLQRVKADPAQIEQVVMNLVIN 377

Query: 327 --DKCPIP 332
             D  P+ 
Sbjct: 378 ARDAMPMG 385


>gi|120556578|ref|YP_960929.1| multi-sensor signal transduction histidine kinase [Marinobacter
           aquaeolei VT8]
 gi|120326427|gb|ABM20742.1| multi-sensor signal transduction histidine kinase [Marinobacter
           aquaeolei VT8]
          Length = 638

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 126/661 (19%), Positives = 221/661 (33%), Gaps = 67/661 (10%)

Query: 181 FGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV 240
           FG+V + R+      +G  L    +     +    +  +EK D    +     L+    V
Sbjct: 11  FGLVWLARLTVCLLTVGLALAIDSTATERHRADVRAKWQEKVDDLGLRLRATILQNTQTV 70

Query: 241 SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINL----------NQYTKKQYFG 290
             L    A + D+ +     L +      PE  +                          
Sbjct: 71  WGLAANVAVQPDIGEERFQRLASVIFKLAPELLNIGLAPGFVIKHIYPLDGNEAALGLDL 130

Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLL 350
             Q+ S++    L        S   +  +           IP F    G +      + +
Sbjct: 131 QAQSLSRDQMALLLESRRAVFSGPINLVQGGQGLAAR---IPIFENDTGRV------WGV 181

Query: 351 LTKYKSVDDIEIAGGLSTLLDAP------------------KLSDNNAIKPVMLYRSDRT 392
           ++    +D +  A GL +L                         D    +PV    +   
Sbjct: 182 ISTILDLDRLYTAIGLDSLPPEVVFALSTTGSGNIDKGLFFGEPDAAWQEPVSTTMAMPG 241

Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
                       W                           I    +  R  +        
Sbjct: 242 FSWKLYAQPADGWPDHPDSPWLLRSLLGLVTLIIIAGTLWITTLILRDRQMQL------- 294

Query: 453 QLCSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
           +   + E    GIA+ +   G +L  N   +++      +I        L  +       
Sbjct: 295 RFWGLFELAPFGIALYDAISGELLQANPGFTRILDSKANNIGYFDDVRSLSGDKQRSEPS 354

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP---FSSCYSLTMHDISEWKQEK 568
               + S    +           +  L  L +   +L      S   + + DIS+ K+ +
Sbjct: 355 ISNRLASQ--VRFTGVEGFFPMADGTLQPLMLHGLRLDLQGKESVIWIIVEDISQRKEAE 412

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
                           KS+F++ VSHE+RTPLT+I G   ++     G L   +  +   
Sbjct: 413 --------------RLKSEFISTVSHELRTPLTSISGALSLLTTNAVGELSG-KAQQLLK 457

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
              R+ + +  ++NDLLDI K+ +GKM+ +     + EA++E++  +Q YA EK I +  
Sbjct: 458 IAQRNSDQLGFLINDLLDIEKLIAGKMDFNVIEFPVSEAITESLENIQNYATEKNITLNA 517

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748
               +   + AD + + Q   NILSNAI F+P  GQI I T       + + V+D G G+
Sbjct: 518 Q-ELSTTTVKADKQRLAQALNNILSNAIKFSPVNGQIRIWTKLHGQG-LRIYVQDEGPGI 575

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
                E+  + F Q  +S +    GTGLGL + K ++    G     S   +G    +  
Sbjct: 576 APEFRERMFQKFSQADSSDRRSKGGTGLGLAITKELMARMEGDVDFTSEAGQGATFWLEV 635

Query: 809 P 809
           P
Sbjct: 636 P 636


>gi|158521531|ref|YP_001529401.1| PAS/PAC sensor hybrid histidine kinase [Desulfococcus oleovorans
           Hxd3]
 gi|158510357|gb|ABW67324.1| PAS/PAC sensor hybrid histidine kinase [Desulfococcus oleovorans
           Hxd3]
          Length = 777

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 84/641 (13%), Positives = 188/641 (29%), Gaps = 43/641 (6%)

Query: 191 NDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK 250
           +D +A G   D  ++ + E     ++ +    +  +        +      S        
Sbjct: 3   DDRQATGAIKDYVYTVIIENGVAVATKQGPGCEAVTGFGADAFEKDPELWLSRIPDE--- 59

Query: 251 DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYF----GTLQNNSKESFEYLSHR 306
           D    T    L  +   ++  +  F   +      +             S+         
Sbjct: 60  DRDRVTGMINLAAAGRDAVSVEHRFVHQDGRTRWLRNTPVLHWEGPGPRSRCLSLIQDIT 119

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGG 365
            H    A   E   +    +D  P   F     G     N +F           I     
Sbjct: 120 EHREADAALRESRTMLNRVIDTVPQSIFWKDTKGRYLGCNRAFAKAAGLDHPRQIVGKTD 179

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
                + P   +              +       +  +Q      L +        ++  
Sbjct: 180 ----FELPWPRETAESYRASDREVLESNSPRLHVVEPMQQADGERLWVNVSKVPLVDETG 235

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
                 GI  +  + +  + ++  E   + +I  +    + + +    ++  N+    + 
Sbjct: 236 LPFAVLGIYEDITERKQMEDELLREKTFIEAIFNSAPGMLYLYDTNERLVRWNKKHETMS 295

Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
           GY  +++       +  +N    +   L  + +   + + E       K+   + +    
Sbjct: 296 GYTSDELNGMHILKWF-ENDEKSIKAILEGVQATMEKGSGEAEADLQKKDGTTIPMYFTG 354

Query: 546 KKL--PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES--SHKSDFLARVSHEIRTPLT 601
            +L        +    DI+E ++   +    +    +             V+H+    L 
Sbjct: 355 SRLTIDDQPYLTGIGIDITERRRAAEEKEKLQAQLLQAQKIESVGRLAGGVAHDFNNMLN 414

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
            I+G + +  +       +     +   I ++ +    +   LL  ++    K  +  + 
Sbjct: 415 VILGHAALALSTL---ADDDLMRGHLEQIQKAADRSAGLTRQLLAFAR----KQTVAPKV 467

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           + L+  V+  + ++ L    + I +      +   I  D   V QI  N+  NA      
Sbjct: 468 LELNATVASMLEML-LRLIGEDIDLAWHPGAHPMLIKMDPSQVDQILANLCVNARDAIEG 526

Query: 722 GGQIIISTTHTS--------------NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
            G+I I T                      +L + D G GM    +    +PF       
Sbjct: 527 TGKITIETGTADFDEAYCAEHPDCIPGAYALLAISDNGAGMDPETISHLFEPFFTTK--- 583

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
              G+G+GLGL     +V  N G   ++S P  GT  ++  
Sbjct: 584 -EMGKGSGLGLATIYGIVRQNNGFINVYSEPGTGTTFKVYL 623



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/318 (7%), Positives = 74/318 (23%), Gaps = 11/318 (3%)

Query: 79  IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFK-MIGMRLCDV-SDILHIDPNNHIGDL 136
                   W  D  G     +    K  G    + ++G    ++       +        
Sbjct: 140 DTVPQSIFWK-DTKGRYLGCNRAFAKAAGLDHPRQIVGKTDFELPWPRETAESYRASDRE 198

Query: 137 LKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRAL 196
           +   N+          +     + ++++ +P+         F   GI             
Sbjct: 199 VLESNSPRLHVVEPMQQADGERLWVNVSKVPLVDETG--LPFAVLGIYEDITERKQMEDE 256

Query: 197 GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDVL 254
             R       +     G   +      +         +     ++++ +      ++D  
Sbjct: 257 LLREKTFIEAIFNSAPGMLYLYDTNERLVRWNKKHETMSGYTSDELNGMHILKWFENDEK 316

Query: 255 KTEKY---PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
             +        T E+ S   + D    +            L  + +     +        
Sbjct: 317 SIKAILEGVQATMEKGSGEAEADLQKKDGTTIPMYFTGSRLTIDDQPYLTGIGIDITERR 376

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
            A  ++ +        +        + G     N    ++  + ++  +        +  
Sbjct: 377 RAAEEKEKLQAQLLQAQKIESVGRLAGGVAHDFNNMLNVILGHAAL-ALSTLADDDLMRG 435

Query: 372 APKLSDNNAIKPVMLYRS 389
             +     A +   L R 
Sbjct: 436 HLEQIQKAADRSAGLTRQ 453


>gi|39998228|ref|NP_954179.1| sensor histidine kinase/response regulator [Geobacter
           sulfurreducens PCA]
 gi|39985174|gb|AAR36529.1| sensor histidine kinase/response regulator [Geobacter
           sulfurreducens PCA]
 gi|298507165|gb|ADI85888.1| response receiver histidine kinase [Geobacter sulfurreducens KN400]
          Length = 484

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 75/364 (20%), Positives = 157/364 (43%), Gaps = 26/364 (7%)

Query: 449 IEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ-NTP 506
            +  Q+ +I ++ +  + +++     +L  N+  ++LFG   E    +     L    + 
Sbjct: 141 AQFNQISTIFDSLNALVYVVDMNSYELLYLNKFGAQLFG---EAWEGRTCHDVLHGGRST 197

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL-TMHDISEWK 565
                   +++              ++   +         +        +    DI+E K
Sbjct: 198 PCDFCTNDKLIMDGKALPPYIWEYQNSISSRWYQCIDKAIRWTDGRMVRMEIAIDITERK 257

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + +                K + ++ VSHE+ TPLTA++GF+E +       +       
Sbjct: 258 EME--------------RMKDEMISAVSHEMHTPLTAMMGFTEFLLENE---VDRDLQKN 300

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           Y   I R    + +++ + L + ++++  +     PV++   V++ +SL    A  K+  
Sbjct: 301 YLKTIYRETERLNELITNFLQLQRLKASMVKFRITPVAVGLLVADVVSLYA--AASKKHR 358

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           I      ++P +  +   + Q   N++SNAI ++P GG + I  +  ++  V L VRD G
Sbjct: 359 IVVECPPDLPPVRGNEEQLYQAISNLVSNAIKYSPDGGDVTIGASAAADI-VTLWVRDQG 417

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G++    EK  + F ++ NS + +  G GLGL L + +V  + G+ ++ S+P KG+   
Sbjct: 418 IGISPEFQEKIFERFFRVDNSDRRKVGGAGLGLTLVREIVATHGGRSWVESSPGKGSTFF 477

Query: 806 IIFP 809
           I  P
Sbjct: 478 ISLP 481


>gi|46906529|ref|YP_012918.1| sensory box histidine kinase [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47091425|ref|ZP_00229222.1| sensory box histidine kinase [Listeria monocytogenes str. 4b H7858]
 gi|226222924|ref|YP_002757031.1| two-component sensor histidine kinase [Listeria monocytogenes
           Clip81459]
 gi|254825659|ref|ZP_05230660.1| sensory box histidine kinase [Listeria monocytogenes FSL J1-194]
 gi|254853438|ref|ZP_05242786.1| sensory box histidine kinase [Listeria monocytogenes FSL R2-503]
 gi|254932516|ref|ZP_05265875.1| sensory box histidine kinase [Listeria monocytogenes HPB2262]
 gi|255520928|ref|ZP_05388165.1| two-component sensor histidine kinase [Listeria monocytogenes FSL
           J1-175]
 gi|300764579|ref|ZP_07074571.1| sensory box histidine kinase [Listeria monocytogenes FSL N1-017]
 gi|46879794|gb|AAT03095.1| sensory box histidine kinase [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47020102|gb|EAL10838.1| sensory box histidine kinase [Listeria monocytogenes str. 4b H7858]
 gi|225875386|emb|CAS04083.1| Putative two-component sensor histidine kinase [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|258606808|gb|EEW19416.1| sensory box histidine kinase [Listeria monocytogenes FSL R2-503]
 gi|293584071|gb|EFF96103.1| sensory box histidine kinase [Listeria monocytogenes HPB2262]
 gi|293594904|gb|EFG02665.1| sensory box histidine kinase [Listeria monocytogenes FSL J1-194]
 gi|300514686|gb|EFK41741.1| sensory box histidine kinase [Listeria monocytogenes FSL N1-017]
 gi|328476128|gb|EGF46837.1| two-component sensor histidine kinase [Listeria monocytogenes 220]
          Length = 610

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 81/398 (20%), Positives = 168/398 (42%), Gaps = 29/398 (7%)

Query: 424 FPENMPQNGIEPEDVDTRINKRKM--EIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
             + + +       +  R+ + +   E E  +L S+L   +DG+   +R G ++  N   
Sbjct: 236 GVDEIGELADSFNTLTKRVQEAQAMTEGERRKLSSVLAYMTDGVIATDRRGKVILINTPA 295

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT-EILSLDLRQTLEKITLGSTKEEKLLS 540
            K+     E    +     L+          +  +      R TL+K  +          
Sbjct: 296 EKMLRVKHESANGRSIIDVLDIGDTYQFEDLMEVDGSLTMDRSTLDKPYVLRAN------ 349

Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
             +I ++  F++     +HDI++ ++   +              + DF++ VSHE+RTPL
Sbjct: 350 FSVIQRETGFNNGVIAVLHDITDQEKVDQE--------------RRDFVSNVSHELRTPL 395

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
           T++  + E + +  +          +          ++ +VNDLL +S+++ G+  L   
Sbjct: 396 TSMHSYLEALSDGAW--EDKEIAPRFLEVTQNETERMIRLVNDLLKLSRMDGGREQLEKS 453

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720
            V+  +  +  I   +    ++ I+ +         I  D   V Q+  NI+SNA  ++P
Sbjct: 454 FVNFTDFFNHIIDRFE-MMKKETIMFKRHIPREPVIIEIDEDKVMQVLDNIISNANKYSP 512

Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
            GG+I        + E+ + + D G+G+ + +L      F ++  ++     GTGLGL +
Sbjct: 513 DGGRISFYLKKFED-EIEVSIADEGLGVPDEDLANVFDRFFRVDKARSREMGGTGLGLAI 571

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
           A+ +++A+ G+ +      KGT+I+   P   +  P D
Sbjct: 572 AREVIEAHGGRIWAERNKTKGTIIKFTLP--YSDLPED 607


>gi|330831032|ref|YP_004393984.1| two-component system hybrid sensor histidine kinase/response
           regulator [Aeromonas veronii B565]
 gi|328806168|gb|AEB51367.1| Two-component system hybrid sensor histidine kinase/response
           regulator [Aeromonas veronii B565]
          Length = 770

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 90/440 (20%), Positives = 183/440 (41%), Gaps = 23/440 (5%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           +++  +   + R  +        L+T Q     S     I      +         +E E
Sbjct: 81  EDSRQRLSRMVRKLQDMRERDLELNT-QLQENISRLNAQIAETNRAESLRLQAIEDLENE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
                  +  +      L S ++ + D +   N +      NRA+ +L G    +++   
Sbjct: 140 VFQREKAQLHLGERTALLRSFIDCSPDLVYYRNEDEQFSGCNRAMEELTGKVEAELIGLT 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CY 554
                +Q   + +     ++ + +   T E+        +    LR +     F      
Sbjct: 200 PFDVYKQEIANKVVETDKQVFASNEPLTYEQWLEYPDGRKAYFELRKVPFFDRFGKRLGL 259

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E KQ ++KL       EK S  K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 260 LGFGRDITERKQYQDKL-------EKASRDKTTFISTISHELRTPLNGIVGLSRMLMDTP 312

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                +P   +    I  S   + +I ND++D+ K++  ++ +    + L   + E  +L
Sbjct: 313 L----DPSQRQQLKTIHLSAVTLGNIFNDIIDLDKLDRRRLEIAPTRLDLPAFLDELETL 368

Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
            ++ A +K + +      ++P+ ++AD   ++Q+  N++ NA+ FT  GG + +      
Sbjct: 369 SRIQAEQKGLYLHFDRDGDMPQFVMADGTRLRQVLWNLVGNAVKFTDEGG-VTVRCLSHP 427

Query: 734 NEE-----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
            +E     +   V DTG+G+   + EK    + Q+    +    GTG+GL +++ +V A 
Sbjct: 428 ADEPGKLALHFEVEDTGIGIPRAQQEKIFAMYYQVQG--KKHATGTGIGLAVSRQLVQAM 485

Query: 789 MGKFYIFSTPAKGTLIEIIF 808
            G+ Y+ S P +G+      
Sbjct: 486 GGRLYVDSDPGEGSCFTAEL 505



 Score = 44.2 bits (103), Expect = 0.093,   Method: Composition-based stats.
 Identities = 15/124 (12%), Positives = 34/124 (27%), Gaps = 5/124 (4%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTWYGKTTLWPIE 153
               +  + +  G    ++IG+   DV      +        +         +  L   +
Sbjct: 177 FSGCNRAMEELTGKVEAELIGLTPFDVYKQEIANKVVETDKQVFASNEPLTYEQWLEYPD 236

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
           G   Y   +L  +P + R  +  G  GFG           +   ++  +  +        
Sbjct: 237 GRKAYF--ELRKVPFFDRFGKRLGLLGFG--RDITERKQYQDKLEKASRDKTTFISTISH 292

Query: 214 HSSV 217
               
Sbjct: 293 ELRT 296


>gi|303258861|ref|ZP_07344840.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           SP-BS293]
 gi|303261545|ref|ZP_07347492.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           SP14-BS292]
 gi|303264215|ref|ZP_07350135.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           BS397]
 gi|303266154|ref|ZP_07352047.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           BS457]
 gi|303268119|ref|ZP_07353919.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           BS458]
 gi|302637125|gb|EFL67613.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           SP14-BS292]
 gi|302639804|gb|EFL70260.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           SP-BS293]
 gi|302642336|gb|EFL72683.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           BS458]
 gi|302644324|gb|EFL74578.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           BS457]
 gi|302646027|gb|EFL76254.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           BS397]
          Length = 449

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 87/376 (23%), Positives = 166/376 (44%), Gaps = 33/376 (8%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           R+ +  +E E  +L SIL   +DG+   NR G I+  N    K  G   ED+L +     
Sbjct: 83  RLTQENLEQESKRLNSILFYMTDGVLATNRRGQIIMINDTAKKQLGLVKEDVLNRSILEL 142

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SL 556
           L+      +   +         Q+ E +        + L+LR+    +   S +      
Sbjct: 143 LKIEENYELRDLI--------TQSPELLLDSQDINGEYLNLRVRFALIRRESGFISGLVA 194

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            +HD +E ++E+ +                 F++ VSHE+RTPLT++  + E +      
Sbjct: 195 VLHDTTEQEKEERERRL--------------FVSNVSHELRTPLTSVKSYLEALDEGALC 240

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV- 675
               P   ++        N ++ +V DLL +S+I++   +L  E ++    ++  ++   
Sbjct: 241 ETVAP---DFIKVSLDETNRMMRMVTDLLHLSRIDNATSHLDVELINFTAFITFILNRFD 297

Query: 676 --QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
             +    EK+  +   +  N   +  D   + Q+  NIL+NAI ++P GG+I +    T 
Sbjct: 298 KMKGQEKEKKYELVRDYPINSIWMEIDTDKMTQVVDNILNNAIKYSPDGGKITVRMKTTE 357

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
           ++ + L + D G+G+   +L +    F ++  ++     GTGLGL +AK ++  + G  +
Sbjct: 358 DQMI-LSISDHGLGIPKQDLPRIFDCFYRVDRARSRAQGGTGLGLSIAKEIIKQHKGFIW 416

Query: 794 IFSTPAKGTLIEIIFP 809
             S   KG+   I+ P
Sbjct: 417 AKSEYGKGSTFTIVLP 432


>gi|295317795|gb|ADF98172.1| sensory box histidine kinase [Clostridium botulinum F str. 230613]
          Length = 617

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 84/362 (23%), Positives = 159/362 (43%), Gaps = 10/362 (2%)

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLF-GYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           ++E   D I I  ++  I+  N + ++L        +       F+ +     + + L  
Sbjct: 222 LIENARDAIIIHRKD-KIVFANESAAELLICNNNGKLENLNINNFILKEEQKKIRNKLEL 280

Query: 516 ILSLDLRQTLEKITLGSTKEEKL-LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA 574
           +          +  + + K +K+ +                  + DI+  KQ +      
Sbjct: 281 VYRNKSDIVCVEQVIQNNKRKKINVESISTYIIYNNRPAILSILRDITSQKQVEKLQKDV 340

Query: 575 KKIAEKESSHK------SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
           +K  E  +  +      +DFLA +S E++TPL  I    +++   +       +  +Y  
Sbjct: 341 EKNIELLNESREYNKLITDFLANISQELKTPLNVIFTAVQILDLYKKDAKSYDKKEQYIK 400

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I ++   ++ ++N+LLD +K++SG + L+    ++   V E    V  YA  K I I  
Sbjct: 401 VIKQNCYRLMRLINNLLDTTKLDSGYLKLNLVNCNIVNLVEEITLSVVYYAESKNINIIF 460

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748
                   +  D   +++I LN+LSNAI FT SGG I ++     +  +I+ V+DTG+G+
Sbjct: 461 DTDVEEKIMAVDPDKIERIVLNLLSNAIKFTGSGGNIYVTVKDFEDN-IIISVKDTGIGI 519

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
              ++E     F Q+  + +   EG+G+GL L K+ V+ + G   I S   KG+   I  
Sbjct: 520 PEDKIENIFDRFVQVDKTLRRNKEGSGIGLYLVKSFVNMHEGTIDIQSEIGKGSEFIINI 579

Query: 809 PL 810
           P+
Sbjct: 580 PV 581


>gi|257094177|ref|YP_003167818.1| multi-sensor signal transduction histidine kinase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257046701|gb|ACV35889.1| multi-sensor signal transduction histidine kinase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 789

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 94/464 (20%), Positives = 174/464 (37%), Gaps = 30/464 (6%)

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
               L R  R   A      T+  +  ++      P             +          
Sbjct: 319 GWWFLSRLLRQQFAPMLAASTLLVDMSHAGEPLLQPLPTTANDEVGQLIHSFNLLLESLA 378

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
             +  ++       ++ +  S  I     +      N    +  G      L   +   +
Sbjct: 379 QREAALKESEQHYRTLADGGSALIWTSGTDRHATYFNEPWLRFTGQSPAGQLAAGWAAGI 438

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMH 559
                                  +      S  E + +      +         Y     
Sbjct: 439 HPEDLDHCRRTYDSHFDRRQPFRMAYRLRASDGEYRWIEDAGTPRVDRAGDFIGYIDFCQ 498

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHK------------------SDFLARVSHEIRTPLT 601
           DISE K+ +++L   +   E   + +                  ++FL+R+SHE+RTPL 
Sbjct: 499 DISERKRVEDELEQHRHHLEALVAARTAALARAKEAAEAANAAKTEFLSRMSHELRTPLN 558

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           AI+GF + +         +    +    I R+G  +L  VN++LD++++ESG++ L  E 
Sbjct: 559 AILGFGQ-LLAMPGDAALSAEQADNVQEILRAGRHLLGQVNEVLDLARVESGRIELKLEA 617

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           V L   V++ ++LV+  A  + I I     +    + AD + ++Q+ LN+LSNAI F   
Sbjct: 618 VPLAPIVADCVALVRPLAEARGISIDADIDDA--PLRADAKRLQQVLLNLLSNAIKFNRE 675

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
            G I I         + L V D+G G+ +  L++  +PF ++ ++     EGTG+GL L 
Sbjct: 676 QGTIRI-AGTRHGGRLRLAVSDSGRGIDSEHLQRLFQPFERLASAYDG-IEGTGVGLALT 733

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH-----PHDCI 820
           + +V+A  G   + S    G+   +  PL + +      P D +
Sbjct: 734 QRLVEAMGGIIQVASQLDVGSTFSLDLPLANPAQDAAALPADAV 777



 Score = 60.0 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/255 (10%), Positives = 57/255 (22%), Gaps = 12/255 (4%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL-LKRQNTW 143
             W      +    +E   +  G      +            +D      D    R+  +
Sbjct: 401 LIWTSGTDRHATYFNEPWLRFTGQSPAGQLAAGWAAGIHPEDLDHCRRTYDSHFDRRQPF 460

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                L   +G   Y  I+ A  P   R  +F G+  F                ++    
Sbjct: 461 RMAYRLRASDGE--YRWIEDAGTPRVDRAGDFIGYIDF--CQDISERKRVEDELEQHRHH 516

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK-------VSSLTEYYAHKDDVLKT 256
              L   +    +  KE  +  +        RM ++       +    +  A   D   +
Sbjct: 517 LEALVAARTAALARAKEAAEAANAAKTEFLSRMSHELRTPLNAILGFGQLLAMPGDAALS 576

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
            +      E              +    + +               +       +    +
Sbjct: 577 AEQADNVQEILRAGRHLLGQVNEVLDLARVESGRIELKLEAVPLAPIVADCVALVRPLAE 636

Query: 317 EGENLTPETVDKCPI 331
                    +D  P+
Sbjct: 637 ARGISIDADIDDAPL 651


>gi|167848113|ref|ZP_02473621.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei B7210]
          Length = 988

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 126/677 (18%), Positives = 232/677 (34%), Gaps = 59/677 (8%)

Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH 233
           +F   +G+ ++H  +      A+G     +          + ++ + +  +   QSP P 
Sbjct: 85  QFDAHQGYAVLHTPQGAPAALAVGIPAPGRS---ASAFAPYLALLETQLLMGDGQSPLPD 141

Query: 234 LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293
            R++    S    Y       + +         S+                 +     + 
Sbjct: 142 DRVEGYSFSPDGTYLSLLWSREDQAPEAFIESHSASGL---IGDAMRGIRYLRDASTIVP 198

Query: 294 NNSKESFEYLSHRNHP--------SLSAYFDEGENLTPETVDKCPIPFF----------- 334
             +     +L     P         +    D    L    V   P+  F           
Sbjct: 199 LRADRRTVWLPPHPDPLTGKPMIRIVQPAIDATGKLFAIYVRSLPLDMFYRNLNDAPAGS 258

Query: 335 ----VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390
               V   GN+   + +        +   + I       L           +  M   SD
Sbjct: 259 TLTIVDRKGNVILGSSNQHGGDGGATASALGI-----RSLGDGFGGLVERYQDGMFVTSD 313

Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR------INK 444
           +        +H   W    + A+              +    +     D +         
Sbjct: 314 QLPGTDWVLVHAYSWK-TIAAALALRFSLVTGLVAGIIVMLWLFAIQFDRKGLIPNYRRA 372

Query: 445 RKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
           +++    +   +IL     G+ +++  +G +L  N A+ +L     ++ L          
Sbjct: 373 QRLLESEVLNRTILRTAPVGLGLLSAQDGSVLLQNNAMLELSARTSDEPLPIRLWEAYRH 432

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                 +               +            L   ++  +   ++    T+ DIS 
Sbjct: 433 AVGRSSDE-------DGALLQHDLAIEREGANPVYLQANVVAARYRGANVLLCTLLDISL 485

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            K+ + KL  A+  A++ +  KS FLA +SHEIRTPL AIIG  E+++        + + 
Sbjct: 486 RKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPL----SEQQ 541

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            E  + ++   N +L I+ND+LD+SK+ESG+M L   P  +   + E +      A  K 
Sbjct: 542 SERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAYAPLAESKG 601

Query: 684 ILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIST----THTSNEEVI 738
           + + +S    + R    D   ++Q+  N++ NAI FT  G  I I             + 
Sbjct: 602 LALLSSIGEGVARHYTGDPTRIRQVLSNLIGNAIKFTERG-HISIDVHRAKAARDGSAIE 660

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           + V DTG+G+    +      + Q   S   R  G+GLGLPL + +V    G   I S P
Sbjct: 661 IWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLP 720

Query: 799 AKGTLIEIIFPLYDTSH 815
             GT + +  PL +  H
Sbjct: 721 DFGTTVTVALPLREARH 737


>gi|239626628|ref|ZP_04669659.1| two-component system protein sensor histidine kinase [Clostridiales
           bacterium 1_7_47_FAA]
 gi|239516774|gb|EEQ56640.1| two-component system protein sensor histidine kinase [Clostridiales
           bacterium 1_7_47FAA]
          Length = 961

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 111/558 (19%), Positives = 205/558 (36%), Gaps = 42/558 (7%)

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF---VYSHGNLFYANPSFLLL 351
                      R     +    +         +  P       V         N   + L
Sbjct: 140 LGISVLAAFYIRYVRRTNKRLMDQAAYIGHLYNAVPEGIALITVEEPNRFIQLNREGMEL 199

Query: 352 TKY---KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
             Y    S + I        +L        +  + +     +        R+     N  
Sbjct: 200 LGYPEGTSNEAISGRSIREVILPDDH---EDMDRLLDHASREGGKAGFEKRML---KNSG 253

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG---I 465
                  I  +  ++    +          +    +     ++ +  +++ A S+    I
Sbjct: 254 EVFWGAGILEKTMDENGTPVLIATFHDITAEKLEEEAAERDKLQERITLVGAISNAYPVI 313

Query: 466 AIIN---REGIILSTNRAVSKLFGYPVEDI-LRKPFTVFLEQNTPSVM-----NHYLTEI 516
             +N        +   + +    G       L + F+  +  +             L E 
Sbjct: 314 IRLNLTRDTLNFIYVRQGLMTDLGSQQTYSRLYEDFSSGVHPDNRKEYASRFSLESLRES 373

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIK----KLPFSSCYSLTMHDISEWKQEKNK-- 570
           L  +  +     +     + +   +   I              L    I E + E+ +  
Sbjct: 374 LVHNKNEVF-LESKHLLADGEYHWISTQIIYVDNPYSDDMLAILISRRIDEQRHEEEQQR 432

Query: 571 --LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
             L  A   A+  S+ KS FL+ +SH+IRTP+ AIIG + +            R +E   
Sbjct: 433 LALESALDSAKAASNAKSRFLSNMSHDIRTPMNAIIGMTAIAAAHID---DRDRVLECLK 489

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I+ SG  +L ++ND+LD+SKIE+GK+++  EP +  E V++A  L++  AN  R+ +  
Sbjct: 490 KINLSGKHLLSLINDVLDMSKIENGKLSMRDEPFNFPELVADAAELIRSQANAGRLAMDV 549

Query: 689 SFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN-----EEVILRVR 742
             +      ++ D   ++Q+ +NILSNA+ +TP GG + I      +        + R  
Sbjct: 550 CLSPMKHENVVGDPLRMRQVCINILSNAVKYTPPGGFVRIEAWQEESPVLGYANYVFRCT 609

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTGVGM    LE   +PF +  +   +R  GTGLG+ + K ++D   G  ++ S+P KG+
Sbjct: 610 DTGVGMEPSFLEHIFQPFERARDHAGMRVAGTGLGMAITKNIIDLMNGDIHVESSPGKGS 669

Query: 803 LIEIIFPLYDTSHPHDCI 820
           +  I  PL     P + +
Sbjct: 670 VFTISIPLKLQDAPKEQV 687


>gi|218779450|ref|YP_002430768.1| histidine kinase [Desulfatibacillum alkenivorans AK-01]
 gi|218760834|gb|ACL03300.1| histidine kinase [Desulfatibacillum alkenivorans AK-01]
          Length = 1056

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 84/259 (32%), Positives = 139/259 (53%), Gaps = 6/259 (2%)

Query: 557  TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
               +I+  ++ +  L  AK+ AE     KS FLA +SHE+RTPL +IIGFS ++  +  G
Sbjct: 791  LAKEIARREELEAHLVTAKEKAESADRLKSAFLATMSHELRTPLNSIIGFSSIVLQELPG 850

Query: 617  PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
            PL N    +    +  S   +L ++ND+LDISKIE+ ++ L  E     EAV+  +  V+
Sbjct: 851  PL-NKEQKKQMGMVRNSARHLLALINDVLDISKIEADQLVLAPEEFDFTEAVNGVVQSVR 909

Query: 677  LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSN- 734
              A +K + +      +  RI  D R ++Q+ +N+++NAI FT  G   +++S     N 
Sbjct: 910  PLAEKKGLELELKQDASKLRIFCDKRRMEQVLINLVNNAIKFTEKGSVSVLVSGPSNRNP 969

Query: 735  ---EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
               + V+++++DTG+G+   +  K  KPF QI      + EGTGLGL + K +V    G+
Sbjct: 970  HGVDMVMIQIQDTGIGIQPGDFSKLFKPFRQIETGLDRKYEGTGLGLSICKKLVGLMGGE 1029

Query: 792  FYIFSTPAKGTLIEIIFPL 810
              + S    G+   +  P+
Sbjct: 1030 ITVESEIGHGSRFTVRLPV 1048


>gi|116695030|ref|YP_840606.1| signal transduction histidine kinase [Ralstonia eutropha H16]
 gi|113529529|emb|CAJ95876.1| signal transduction histidine kinase containing a receiver domain
           (hybrid) and a NtrB-like sensor domain [Ralstonia
           eutropha H16]
          Length = 608

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 85/379 (22%), Positives = 170/379 (44%), Gaps = 20/379 (5%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN- 504
            ++  +    ++L+     + + +    +++ NR+  +L G   + +  +P    ++ + 
Sbjct: 36  ALKDNIAIQSALLDGIPQPVYLRDASLRLITCNRSYEELVGATRDTLRGQPLDTSVQVHP 95

Query: 505 ---TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM--- 558
                + +     +++   +    ++         +   +   +  L  +      +   
Sbjct: 96  IAIDMAEVERDYRKVIKDGIPLHKDRCLRL---GGRTHHVLNWLTPLRGADGTVKGLAGG 152

Query: 559 -HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
             D++E      +L+ AK  AE  +  KS FLA VSHEIRTP+ AI G  E+   +    
Sbjct: 153 CVDLTERHDMLAELAQAKTEAEAANRAKSTFLASVSHEIRTPMNAITGMLELTLARCQLA 212

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
               +         +S   +L +++D+LD+SK+E+GK ++H  P SL   V + + +   
Sbjct: 213 ---EQERLQLVTAHKSAVGLLALIDDILDLSKMEAGKFSIHPAPASLPGLVKDTLLIFGP 269

Query: 678 YANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIST---THTS 733
            A +K + + +     +  +   D    +QI  N++SNA+ FT SG  I +         
Sbjct: 270 VAAQKGLPLTSGIGVAVAPLHQVDALRFRQILANLVSNAVRFTDSG-TIHVRLDALAPRD 328

Query: 734 N-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
             ++V+L V DTG+G+   E  +  +PF Q+ +  +    GTGLGL + + +  A  G+ 
Sbjct: 329 GVQQVMLTVSDTGIGIPAGEQARMFEPFEQVHDRTRPHAGGTGLGLAICQRLASAMGGQI 388

Query: 793 YIFSTPAKGTLIEIIFPLY 811
            + S P +GT + +  PL 
Sbjct: 389 SLSSQPGQGTRVMVTLPLA 407



 Score = 46.9 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 10/135 (7%), Positives = 25/135 (18%), Gaps = 5/135 (3%)

Query: 323 PETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
              +D  P P ++      L   N S+  L               S  +    +      
Sbjct: 45  SALLDGIPQPVYLRDASLRLITCNRSYEELVGATRDTLRGQPLDTSVQVHPIAIDMAEVE 104

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
           +       D                   +  +                  G   +  +  
Sbjct: 105 RDYRKVIKDG----IPLHKDRCLRLGGRTHHVLNWLTPLRGADGTVKGLAGGCVDLTERH 160

Query: 442 INKRKMEIEVMQLCS 456
               ++     +  +
Sbjct: 161 DMLAELAQAKTEAEA 175


>gi|148545406|ref|YP_001265508.1| multi-sensor signal transduction histidine kinase [Pseudomonas
           putida F1]
 gi|148509464|gb|ABQ76324.1| Alginate biosynthesis sensor protein KinB [Pseudomonas putida F1]
          Length = 593

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 106/552 (19%), Positives = 201/552 (36%), Gaps = 36/552 (6%)

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
           T+ ES    QE+F  +      +          S     +L      +  A     +   
Sbjct: 74  TAPESLRLLQENFQDLLNQGLEQGGERTGFSKASSNYQAFLQTYRDSATPARSMGADQPL 133

Query: 323 PETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
               ++            L     S            + ++G L   L    +     I 
Sbjct: 134 GAAFNQVRTDLIDSHKQALDLITRSEER----TRDRALLVSGVLG--LMGLVVLVLGFIT 187

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
              + R         A         + +  +T  P  +A +  +   + G+  + +    
Sbjct: 188 AHNIARRFGQ--PIEALAKAADQLGKGNFDVTL-PVTQAAELNQLTRRFGLMADALRKHQ 244

Query: 443 NK--RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
                ++     +L ++L++  DG+ II+R+G +   N    +  G+    +        
Sbjct: 245 ATNVDELLAGQQRLQAVLDSIDDGLLIIDRQGRLEHLNPVAQRQLGWNDSRVGSSLVEAL 304

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTM 558
                   +   L           L         E +LL+  +     P        + +
Sbjct: 305 QRPELEQQLRQVLRGGSLDRPPDDLNMEV---DDESRLLTYSLTPVSHPQGPILGAVMVL 361

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
           HD++E +  +                +S+F+ R SHE+RTP+T  +  +  +  +R    
Sbjct: 362 HDVTEQRAFE--------------RVRSEFVLRASHELRTPVTG-MHMAFGLLRERVKFP 406

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
              R  +    I      +  ++NDLL+ S+ +SG   L   P ++D+ +  A      +
Sbjct: 407 PEARENDLLETIGEEMQRLTQLINDLLNFSRYQSGLQKLELAPCAIDDLLEHAQLRFAEH 466

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738
           A  K+I +       +PRI AD+  + ++  N+L NAI  T +GG+I +       E VI
Sbjct: 467 AAHKQIELIKELDPPLPRIQADVAQLDRVLDNLLHNAIRHTANGGRIRLH-ARRHAERVI 525

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           + V D G G++  +  +  +PF Q+      +  G GLGL L K +V  + G+  +FS P
Sbjct: 526 ISVEDNGEGISYGQQARIFEPFVQV----GRKKGGAGLGLALCKEIVQLHGGRMGVFSRP 581

Query: 799 AKGTLIEIIFPL 810
            +GT   +  P+
Sbjct: 582 GQGTQFYMALPV 593



 Score = 41.2 bits (95), Expect = 0.76,   Method: Composition-based stats.
 Identities = 24/270 (8%), Positives = 69/270 (25%), Gaps = 11/270 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G L+ ++    + +G    ++ G  L +      ++        + R  +      
Sbjct: 272 IDRQGRLEHLNPVAQRQLGWNDSRV-GSSLVEALQRPELEQQ---LRQVLRGGSLDRPPD 327

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
              +E  +    +  +  P+        G     ++H          +  R +      H
Sbjct: 328 DLNMEVDDESRLLTYSLTPVSHPQGPILGA--VMVLHDVTEQRAFERV--RSEFVLRASH 383

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           E+ +   +     + +  ++   P    +N +         +   L  +       +   
Sbjct: 384 EL-RTPVTGMHMAFGLLRERVKFPPEARENDLLETIGEEMQRLTQLINDLLNFSRYQSGL 442

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
              +     I+      +  F     + +           P + A   + + +    +  
Sbjct: 443 QKLELAPCAIDDLLEHAQLRFAEHAAHKQIELIKELDPPLPRIQADVAQLDRVLDNLLHN 502

Query: 329 CPIPFFVYSHGNLFYANPSFLLLTKYKSVD 358
                   + G +                D
Sbjct: 503 A--IRHTANGGRIRLHARRHAERVIISVED 530


>gi|110833303|ref|YP_692162.1| sensor histidine kinase [Alcanivorax borkumensis SK2]
 gi|110646414|emb|CAL15890.1| sensor histidine kinase [Alcanivorax borkumensis SK2]
          Length = 813

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 77/256 (30%), Positives = 132/256 (51%), Gaps = 8/256 (3%)

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
            + ++S          + +S+FLA +SHEIRTPL  IIG  +++K    G   N      
Sbjct: 408 LEQRVSERTSELNAALNARSEFLAVMSHEIRTPLNGIIGTVDMLK----GSPLNDEQRHN 463

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
            N I++SGN +L+++ND+LD S+IE+GKM +     +L   ++E+++L Q  A      +
Sbjct: 464 LNVIEQSGNSLLNLINDILDYSRIEAGKMPIEQTSFNLFNLLNESLTLFQHKAQIHSNAL 523

Query: 687 RTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS--NEEVILRVRD 743
               A N+  R L D   ++QI +N++SNA+ FT +G  I +        ++ +   V+D
Sbjct: 524 TLDVAPNVSERCLGDPVRLRQILVNLISNAVKFTDNG-TITVRAQRDPANSDYLYFEVQD 582

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           +G G++  +  +    F Q  +S   R  GTGLGL + + +V+   G+  + S P +G+ 
Sbjct: 583 SGTGISEEQQRRLFDHFQQGDSSTSRRYGGTGLGLAICRQLVEIMGGEIGVDSKPKQGSR 642

Query: 804 IEIIFPLYDTSHPHDC 819
                P+  T     C
Sbjct: 643 FWFRLPIPCTERADTC 658


>gi|110635903|ref|YP_676111.1| PAS/PAC sensor signal transduction histidine kinase [Mesorhizobium
           sp. BNC1]
 gi|110286887|gb|ABG64946.1| PAS/PAC sensor signal transduction histidine kinase [Chelativorans
           sp. BNC1]
          Length = 843

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 124/635 (19%), Positives = 233/635 (36%), Gaps = 30/635 (4%)

Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA 248
                    +   +    L    +    +  E   +    S    +    +    +   A
Sbjct: 222 RLKLDHQRLQADHESILGLINALEMPFWLRDEAGRLKWVNSAYAQMV---EAKDPSAAAA 278

Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
              ++L +     +       P   +  +  +    +        +    +   L   + 
Sbjct: 279 EGRELLPSSARAAVAQHHQEQPVFREPLSTVVGGDRRLFAVTDYASQKGSAGIALDTSDV 338

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLS 367
            +L   ++       +T+D+      ++     L + N +F  L        ++     +
Sbjct: 339 DALRREYESTLRSHADTLDQLTTAVAIFDADQKLKFYNQAFQKLWAL-DAGFLDAGPEYA 397

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
            LLD  +     A +P      ++   A  A      W          +     ++    
Sbjct: 398 LLLDRLRSDGKLAEQPEWRRWKEQLLSAYRAVEPQEHWWHLPDGRTIRVVATPQSKGGVT 457

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
                +  +          ++++       L+  ++G+A+   +G +  +N A   L+G 
Sbjct: 458 WVFENLTEKIDLESRYNAVVKVQRE----TLDNLAEGVAVFGPDGRLRLSNPAFRTLWGI 513

Query: 488 PVEDILRK-PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL---SLRI 543
           P + I      ++      P  M     E +        +          +L+   +L  
Sbjct: 514 PEKLIGPDIHISILKAACDPVAMESPWAEFV--GAVTGFDDERRDKHGRTELINGAALHY 571

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
            I  LP      LT  D+++    +  L    +  EK    K+DF+  VS+E+R+PLT I
Sbjct: 572 AIVHLPNGQ-VMLTFVDVTDSVNVERALKEKNEALEKADRLKNDFVQHVSYELRSPLTNI 630

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           IGF+E++  +  GPL NPR  EY ++I  S +L+L IVND+LD++ +++G M L    V 
Sbjct: 631 IGFTELLGQETTGPL-NPRQREYVDHIGSSSSLLLTIVNDILDLATVDAGIMELEIGEVE 689

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
           +   V  A  LV     E RI +  +         AD   ++QI  N+LSNA ++ P GG
Sbjct: 690 IRPLVKAATDLVADRLREHRIRLEVTVDAAPVSFHADENRIRQILYNLLSNAANYAPEGG 749

Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG-----QIPNSQQIRGEGTGLGL 778
           +I +S + T N  +  RV D G GM+   L    K F             +         
Sbjct: 750 KITLSASGTGNA-IEFRVHDNGPGMSPEVLATIFKRFEPSAKGGRRRGAGLGLA------ 802

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
            + K+ V+ + G   I + P +GT +   FP+  +
Sbjct: 803 -IVKSFVELHGGTVDIDTAPGRGTAVTCRFPMSPS 836



 Score = 45.0 bits (105), Expect = 0.059,   Method: Composition-based stats.
 Identities = 33/396 (8%), Positives = 102/396 (25%), Gaps = 44/396 (11%)

Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253
               +RL  +      +    +        + +        R    +S  T         
Sbjct: 14  PQAHRRLGIRDMARLAVSSIAALASTPLTAVMAMAQQEGAARAAAGLSISTIEVIQLSVF 73

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
                   L++       +E   T + N   K      +   S       +  N      
Sbjct: 74  AGVLGAAFLSAI---WLIRERGRTASENTELKN----RMAELSGALSRAEALLNLKDQRI 126

Query: 314 YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
              +G        D  P     +          +F      +S   ++ A          
Sbjct: 127 IVWQGNQRPIVLGDLSPESGVPHDRSTFL----AFGRWLTPRSASALDRATAA------- 175

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
            L +      ++    +        R   +                        +  +  
Sbjct: 176 -LREAGTAFDLVAETREGLLFEVQGRKSALH------------------AIVRFLSLSAA 216

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
           + E+   +++ ++++ +   +  ++ A      + +  G +   N A +++         
Sbjct: 217 QAENARLKLDHQRLQADHESILGLINALEMPFWLRDEAGRLKWVNSAYAQMVEAKDPSAA 276

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553
                  L  +  + +  +       +     E ++     + +L ++     +   S+ 
Sbjct: 277 AAEGRELLPSSARAAVAQH-----HQEQPVFREPLSTVVGGDRRLFAVTDYASQ-KGSAG 330

Query: 554 YSLTMHDISE-WKQEKNKLSHAKKIAEKESSHKSDF 588
            +L   D+    ++ ++ L       ++ ++  + F
Sbjct: 331 IALDTSDVDALRREYESTLRSHADTLDQLTTAVAIF 366


>gi|104779398|ref|YP_605896.1| alginate biosynthesis sensor protein KinB [Pseudomonas entomophila
           L48]
 gi|95108385|emb|CAK13079.1| alginate biosynthesis sensor protein KinB [Pseudomonas entomophila
           L48]
          Length = 592

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 94/427 (22%), Positives = 172/427 (40%), Gaps = 28/427 (6%)

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK--R 445
            + R      A         + +  +T  P  +A +  +   + G+  + +         
Sbjct: 190 IARRFGQPIEALAKAADQVGQGNFDVTL-PVTQATELNQLTRRFGLMADALRKHQATNID 248

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           ++     +L ++L++  DG+ II+R+G +   N    +  G+    +             
Sbjct: 249 ELLAGQQRLQAVLDSIDDGLLIIDRQGRLEHLNPVAQRQLGWDPGRLGMSLAEALQRPEL 308

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISE 563
              +   L           L        +E +LL+  +     P        + +HD++E
Sbjct: 309 EQQLRQVLRGGSLDRPPDDLNLEV---DEESRLLTYSLTPVSHPQGPILGAVMVLHDVTE 365

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            +  +                +S+F+ R SHE+RTP+T  +  +  +  +R       R 
Sbjct: 366 QRAFE--------------RVRSEFVLRASHELRTPVTG-MHMAFGLLRERISFPAGARE 410

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            +  + I      +  ++NDLL+ S+ +SG   L   P +LDE    A +     A  K+
Sbjct: 411 NDLLDTIAEEMQRLTQLINDLLNFSRYQSGLQKLELAPCALDELFERAQARFAEQAANKQ 470

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
           I +       +PRI AD   + ++  N+L NAI  T SGG+I +       E VI+ V D
Sbjct: 471 IELLRELEPPLPRIQADAAQLDRVLDNLLHNAIRHTASGGRIRLH-ARRHAERVIISVED 529

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
            G G+   +  +  +PF Q+      +  G GLGL L K +V  + G+  +FS P +GT 
Sbjct: 530 NGEGIAYGQQGRIFEPFVQV----GRKKGGAGLGLALCKEIVQLHGGRMGVFSRPGQGTQ 585

Query: 804 IEIIFPL 810
             +  P+
Sbjct: 586 FYMALPV 592



 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/270 (9%), Positives = 69/270 (25%), Gaps = 11/270 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G L+ ++    + +G    + +GM L +      ++        + R  +      
Sbjct: 271 IDRQGRLEHLNPVAQRQLGWDPGR-LGMSLAEALQRPELEQQ---LRQVLRGGSLDRPPD 326

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
              +E       +  +  P+        G     ++H          +  R +      H
Sbjct: 327 DLNLEVDEESRLLTYSLTPVSHPQGPILGA--VMVLHDVTEQRAFERV--RSEFVLRASH 382

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           E+ +   +     + +  ++   P    +N +         +   L  +       +   
Sbjct: 383 EL-RTPVTGMHMAFGLLRERISFPAGARENDLLDTIAEEMQRLTQLINDLLNFSRYQSGL 441

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
              +     ++      +  F     N +           P + A   + + +    +  
Sbjct: 442 QKLELAPCALDELFERAQARFAEQAANKQIELLRELEPPLPRIQADAAQLDRVLDNLLHN 501

Query: 329 CPIPFFVYSHGNLFYANPSFLLLTKYKSVD 358
                   S G +                D
Sbjct: 502 A--IRHTASGGRIRLHARRHAERVIISVED 529


>gi|262171335|ref|ZP_06039013.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           mimicus MB-451]
 gi|261892411|gb|EEY38397.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           mimicus MB-451]
          Length = 1163

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 86/369 (23%), Positives = 156/369 (42%), Gaps = 17/369 (4%)

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG--YPVEDILRKPFTVFLEQNTP 506
            ++  L  +L+A    I I + EG ++ TN A     G  +  + +   P   FL+    
Sbjct: 508 EQIQWLTELLDAIPSMIYISDYEGDVVLTNAAYRDAMGACHANDCLNNLPDCSFLQLPDS 567

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQ 566
           S   + +   +        E       +         I   +     Y    +DI+E K+
Sbjct: 568 STSEYSVVIQIPARSCAIGEHYYHVIRRG--------IAHPINRRQYYLTLFNDITELKE 619

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
            ++ L  +   A +    ++ FLA VSHE+RTP+ A++G  E++ ++    + +      
Sbjct: 620 TESALRQSTAQALQAVEARNHFLAVVSHELRTPIAAMLGLMEILASR----IKSNESQLL 675

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
                 S   +   VND+LD SKIE+ ++ L      L + +   +   +  A+ + +  
Sbjct: 676 LTNAITSAERLKMHVNDILDFSKIEAQQLQLDVATYHLADELCPLLRSFEATADLQGLDF 735

Query: 687 RTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
             ++  +    +  D   + QI  N+LSNA+ FT  G  I I    +        V DTG
Sbjct: 736 IVNWQPDARLLVQVDALRLNQIITNLLSNALKFTEKGS-IRICVEQSEQ-HFTFEVTDTG 793

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
            GMT  ++    +PF Q  +S   R  GTGLG+ +   +V+   G  ++ S   +GT + 
Sbjct: 794 CGMTEPQIASIFQPFVQADSSITRRFGGTGLGMSIVANLVELMGGHIHVESEIDQGTTVR 853

Query: 806 IIFPLYDTS 814
           +  P+   +
Sbjct: 854 VSLPVVGEA 862


>gi|224367364|ref|YP_002601527.1| two-component hybrid sensor and response regulator histidine kinase
           (phoR-like protein) [Desulfobacterium autotrophicum
           HRM2]
 gi|223690080|gb|ACN13363.1| two-component hybrid sensor and response regulator histidine kinase
           (phoR-like protein) [Desulfobacterium autotrophicum
           HRM2]
          Length = 588

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 89/396 (22%), Positives = 171/396 (43%), Gaps = 23/396 (5%)

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476
                 +  E         E +D +I  +  E   M+L ++L +  +G+  ++    +L 
Sbjct: 215 AMPDTEELSELALTINHMAERLDEKI--KSAEDRTMELEAVLSSMGEGVIAVDLNERVLM 272

Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
            NRAV+ +F +P+E +  K             ++ ++   L+             + K  
Sbjct: 273 VNRAVAGIFDHPIETMTNKNILEIARNYD---LHKFIKRALASPDSIGENITLTDTGKRL 329

Query: 537 KLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
             +    +           +  HDI+   + +                  DF A VSHE+
Sbjct: 330 FNVHSNTLSNAQGERMGTLIIFHDITRMHRLETMHK--------------DFAANVSHEL 375

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK-M 655
           +TPLT+I GF E +++         R   +   I+++ N ++ +V+DL+ +SK+E  +  
Sbjct: 376 KTPLTSIKGFIETLQDLDESEALT-RREGFLTIIEKNVNRMIALVDDLMALSKLERQEGD 434

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715
              FEP  L   +  A +  +  +   R+ ++   +  +  I  D   V+Q  +N+L NA
Sbjct: 435 KTVFEPHDLSAVIKSARAACRTRSESGRVTVKADLSGPL-FIPMDTLLVEQALVNLLDNA 493

Query: 716 IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           + ++  GG+++I          ++RV D+G G+    L +  + F ++ +++     GTG
Sbjct: 494 LKYSEPGGEVLIQVA-QEKGSALIRVIDSGPGIGQEHLSRIFERFYRVDSARSTDMGGTG 552

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
           LGL + K +V  + G   + STP KG + EI  PL 
Sbjct: 553 LGLAIVKHIVQYHNGTIRVESTPDKGAMFEISLPLA 588


>gi|171320726|ref|ZP_02909738.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           ambifaria MEX-5]
 gi|171094020|gb|EDT39120.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           ambifaria MEX-5]
          Length = 1022

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 110/637 (17%), Positives = 203/637 (31%), Gaps = 38/637 (5%)

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247
               D  A    L    S +      +     E Y      +          +S      
Sbjct: 117 TGRRDEVARYLALSFLLSRICAASSLNRGRTLEGYHY---STRTGMFGFVPHLSRDNPAL 173

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
           A  D         L    +   P     H           Y   +   ++      +  +
Sbjct: 174 ATPDARA-RVLAALHIDFDGPAPTDGRPHV-----RWLPPYINPVTGQARIRIAAEARAD 227

Query: 308 HPSLSAYFDEGENLTPETVDKCPI-----PFFVYSHGNLFYANPSFLLLTKYKSVDDIEI 362
               +    E        +   P       FF+ S  N   A    +  T   +   + +
Sbjct: 228 GRPFAVLATEYSPEY--LLSWLPGRGTAGVFFIVSADNRLIAIDPGVERTNALTERLLNL 285

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
                          + AI       +    IA                A          
Sbjct: 286 DVAHDDRAADESFFRDGAIVFRSRLAATGWTIAY-VLSWADVAAGIGVQAGALAASTLVA 344

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQL-CSILEATSDGIAIIN-REGIILSTNRA 480
                +         +     +     E   L  S++     GI +++  +  ++  +  
Sbjct: 345 IVVMWLLLVRFHRRVLVPVYARSARVFESEALCRSVIAMAPVGIGLVSLSDRRVMLASDV 404

Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
           ++++      D                 +  Y   + +    +T+    +     +  L 
Sbjct: 405 LAQMLVLHGGDHH---------ALAAQALAQYDAFVANGGAGRTMMTELVLDAHGDAPLH 455

Query: 541 LRIII--KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
           L +I    +            D +  ++  ++L  A + A+  ++ KS FLA  SHEIRT
Sbjct: 456 LEVIAHSARYQGEDVLIAVFADTTAQRRLVHQLEEAVRAADSANAAKSSFLAATSHEIRT 515

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
           PL  I+G  E+++        +         +  S   +L IV+D+LD SKIE+G M++ 
Sbjct: 516 PLNVILGNLELLERTAL----DASQQSRVQTLRASAEGLLAIVSDILDFSKIEAGAMSVE 571

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIH 717
                +   +   ++     A  K + +      +  + +  D   + Q+  N+L NAI 
Sbjct: 572 SIEFDVIAVIERELAAFAPVARAKGLPLFADIDASAAQRMRGDPTRLAQVVGNLLGNAIK 631

Query: 718 FTPSGGQI-IISTTHTSNE--EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           FT  G  +  ++  H      E+ + + DTG+G+   +  +  KPF Q+  S   R  GT
Sbjct: 632 FTGEGRIVARVAVGHDVRGKPEIAIGIEDTGIGIDPAQQNRLFKPFSQVDASITRRYGGT 691

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
           GLGL L   +V A  G   + S P  G+L  +  PL+
Sbjct: 692 GLGLALCDRLVAAMGGTISVHSAPGVGSLFTVRLPLH 728


>gi|108756850|ref|YP_628911.1| sensory box histidine kinase [Myxococcus xanthus DK 1622]
 gi|108460730|gb|ABF85915.1| sensory box histidine kinase [Myxococcus xanthus DK 1622]
          Length = 569

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 88/575 (15%), Positives = 193/575 (33%), Gaps = 39/575 (6%)

Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
                 +           +  E++      +  +          ++ + S E ++     
Sbjct: 2   ASARRPSTLTARAVPPIPTCMERDTPSAFRVEAFRAPMSRDAGNDDQRVSEESMASGIDE 61

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLST 368
             +             +D    PF     G  + + N +   L  +   + I      S 
Sbjct: 62  LSAW------------LDAAVDPFVACDAGENVCFLNAAAERLLGWTREELIGQP--ASR 107

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
           L                L          + R+   + +    +    +      +    +
Sbjct: 108 LFPQRLHRHEGVSLLRHLLSRRAALGGRATRVLARRKDGAEIMVELTVGASGKGRDERIV 167

Query: 429 PQNGIEPEDVDTRINKRK-----MEIEV----MQLCSILEATSDGIAIINREGIILSTNR 479
                  E VDT     +     +E E         +++E    GI   +R  I+++ N 
Sbjct: 168 LNFRRLHEVVDTLAEPVERTLHGLESESVPGDALFRTVVEHAPMGIIYFDRSAIVIACNE 227

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
               + G P   ++        ++     +   L            E      T   +  
Sbjct: 228 LFVSIIGSPKRLLVGLNLLSLRDEGILHCVRETLA-----GHTCEYEGEYRAIT-SGRKT 281

Query: 540 SLRIIIKKLPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
            + +       ++         + DISE ++ + +     + A++    + DFL+  SHE
Sbjct: 282 PVHVRFAPCFNAAGQVEGGIGIVEDISERRRAERERERLYREAQEAIRVRDDFLSIASHE 341

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           ++TPLT +      ++ +                       +  ++NDLLD S+IE+G++
Sbjct: 342 LKTPLTPLSLRLATLERRLARGELVESST--LRQARLYLLRITSLINDLLDSSRIEAGRL 399

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715
            LH E   L+  V   +  ++         +R        ++  D   ++Q+  N++ NA
Sbjct: 400 ALHREATRLEGLVEHVLHELEPQ--RGNHTVRFDAPEQPVQVNVDPFRMEQVLANLVENA 457

Query: 716 IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
             ++P+GG + +S         +L V D G+G+   + +     + +  N+      G G
Sbjct: 458 FKYSPNGGTVRVSLRQR-GGLALLSVSDEGIGIPPDQQKLLFDRYFRARNASAHSFGGLG 516

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           LGL +++ +V+ + G+ ++ S P  G+   +  PL
Sbjct: 517 LGLYISRDIVERHGGRIWVESEPGHGSTFHVALPL 551



 Score = 37.3 bits (85), Expect = 9.5,   Method: Composition-based stats.
 Identities = 26/231 (11%), Positives = 55/231 (23%), Gaps = 11/231 (4%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNTWYG-- 145
           DA   +  ++    + +G    ++IG     +             +  LL R+    G  
Sbjct: 77  DAGENVCFLNAAAERLLGWTREELIGQPASRLFPQRLHRHEGVSLLRHLLSRRAALGGRA 136

Query: 146 -KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN------RVDNDPRALGK 198
            +      +G  + V + + A       R    FR    V         R  +   +   
Sbjct: 137 TRVLARRKDGAEIMVELTVGASGKGRDERIVLNFRRLHEVVDTLAEPVERTLHGLESESV 196

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
             D  F  + E              + +       +    K   +        D      
Sbjct: 197 PGDALFRTVVEHAPMGIIYFDRSAIVIACNELFVSIIGSPKRLLVGLNLLSLRDEGILHC 256

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
                +  +   E E     +  +      F    N + +    +      
Sbjct: 257 VRETLAGHTCEYEGEYRAITSGRKTPVHVRFAPCFNAAGQVEGGIGIVEDI 307


>gi|265763357|ref|ZP_06091925.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
 gi|263255965|gb|EEZ27311.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
          Length = 899

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 102/484 (21%), Positives = 185/484 (38%), Gaps = 29/484 (5%)

Query: 337 SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA 396
             G L +AN  F L  +     D+ +            ++     +       +   +  
Sbjct: 268 RDGTLIFANRQFRLNHRIAEQADLSLIRVFD---VVGDMTCIEDWEERYRSIREGQTLNF 324

Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
            A           +   T       +             +  +    + +++     + +
Sbjct: 325 LAYQPLKHDKNTLAFEGTMYSVTTDDGEETFWSF---THDISERIRYESQIKRFNRIMDT 381

Query: 457 ILEATSDGIAIIN--REGIILSTNR-AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
            +E    GI + +   +   +  NR + ++      E+ +      +             
Sbjct: 382 TMENIPAGIVVKDIENDFRYIYRNRESYNR--DISSENAIGMNDFDYYPLEMAQQKRKED 439

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLR---IIIKKLPFSSCYSLTMHDISEWKQEKNK 570
            EI +      +  I  G  K   LL L    I+++   FS        DI++ +  + +
Sbjct: 440 MEIAATGK--GMHWIMEGKDKNGNLLILDKQKIMVESEDFSPIIVSIEWDITQLELMRRE 497

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           L  +K+ AE     KS FLA +SHEIRTPL AI+GFS +I              EY   +
Sbjct: 498 LIESKEKAETSDKLKSAFLANMSHEIRTPLNAIVGFSRIISESDNA----EERREYYEIV 553

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
           D +   +L ++N++LD+SKIESG +   + PV L     E          +  + +R   
Sbjct: 554 DANNERLLQLINEILDLSKIESGIVEFTYGPVRLHTLCKEIHDAHVFRCPQ-GVELRFDS 612

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-VILRVRDTGVGMT 749
            +    I +D   + Q+  N++ NA  FT  G    +S  +    E V+  V+DTG+G+ 
Sbjct: 613 PDEALSIHSDKNRIFQVFSNLIGNAFKFTTEGS---VSYGYKQEGERVVFYVKDTGLGIE 669

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             +L +  + F ++ N      +GTGLGL + K +++   G+  + S    GT      P
Sbjct: 670 PEKLGRVFQRFAKLNNF----AQGTGLGLSICKTIIERLGGEIAVSSEVGTGTTFTFWLP 725

Query: 810 LYDT 813
           L + 
Sbjct: 726 LENV 729



 Score = 47.3 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/128 (14%), Positives = 37/128 (28%), Gaps = 4/128 (3%)

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           IL+ TSD + ++++ G  L  +   S L+    + +L K     L  +T   +      +
Sbjct: 14  ILQLTSDTLILVDKNGTCLDIDPH-SDLWFLQEDRLLGKNLFNLLPDHTFQKLLPDFRRV 72

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKK 576
               +             E       +                DI+     K +L     
Sbjct: 73  TQQGITVNRNYRLPLEGGETYYFKCIMQPY---DGDKVLCQYRDITARSNVKLQLERTNY 129

Query: 577 IAEKESSH 584
             ++    
Sbjct: 130 ELKEIQKA 137



 Score = 40.0 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 18/193 (9%), Positives = 48/193 (24%), Gaps = 12/193 (6%)

Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
           ++R  +      + I    +              +    + + G      D +  +  + 
Sbjct: 192 ANRRELLKEYIEYRILLEGQVYYMRQQCYLRNEEEDGNIVLE-GYIQNITDIQRKRNDI- 249

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL----EQN 504
                L   +    + +    R+G ++  NR       + + +              +  
Sbjct: 250 ---NTLTHAINNAKESVYAARRDGTLIFANRQFR--LNHRIAEQADLSLIRVFDVVGDMT 304

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI-IIKKLPFSSCYSLTMHDISE 563
                      I        L    L   K        +  +        +    HDISE
Sbjct: 305 CIEDWEERYRSIREGQTLNFLAYQPLKHDKNTLAFEGTMYSVTTDDGEETFWSFTHDISE 364

Query: 564 WKQEKNKLSHAKK 576
             + ++++    +
Sbjct: 365 RIRYESQIKRFNR 377


>gi|30019626|ref|NP_831257.1| sensor protein resE [Bacillus cereus ATCC 14579]
 gi|229126891|ref|ZP_04255903.1| hypothetical protein bcere0015_13480 [Bacillus cereus BDRD-Cer4]
 gi|229144176|ref|ZP_04272590.1| hypothetical protein bcere0012_13390 [Bacillus cereus BDRD-ST24]
 gi|29895170|gb|AAP08458.1| Sensor protein resE [Bacillus cereus ATCC 14579]
 gi|228639184|gb|EEK95600.1| hypothetical protein bcere0012_13390 [Bacillus cereus BDRD-ST24]
 gi|228656831|gb|EEL12657.1| hypothetical protein bcere0015_13480 [Bacillus cereus BDRD-Cer4]
          Length = 591

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 80/371 (21%), Positives = 153/371 (41%), Gaps = 39/371 (10%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            ++ E  QL SIL + +DG+  +N+EG ++  N           E+       + L +  
Sbjct: 249 ALQQEKEQLASILSSMADGVITLNQEGEVVVINPPAEHFLQVWQEEK-----EIELSKKL 303

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
           PS +      ++  + +Q +E        +   + L   +            + D++E +
Sbjct: 304 PSELVELFHLVVESEQQQVVEINLQ----KGNYVVLMTPLYNQTKIRGAVAVLRDMTEER 359

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + +                + DF+A VSHE+RTP+  + G+SE I +            E
Sbjct: 360 RLE--------------KMRQDFIANVSHELRTPMVMLQGYSEAILDDIVQT--KEEIDE 403

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           +   I      +  +VN+LLD++++ESG + LH   V +   V +     Q  A +K + 
Sbjct: 404 FVQIIYDESVRLGKLVNELLDLARMESGHVELHIGEVDIHPFVEKIGRKFQGIAKDKEVA 463

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +   F   I +   D   ++Q+  N++ NAI  T +GG + +     +N  +I  V+D+G
Sbjct: 464 LTVDFKGPIEQYPFDADRMEQVLTNLIDNAIRHTNAGGHVTLVIDTKNNG-LIFEVQDSG 522

Query: 746 VGMTNYELEKAMKPFGQIPNSQQI-------RGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
            G+   ++      F +   ++          G        +AK +V  + GK  + S  
Sbjct: 523 AGIPEEDIPFLFDRFYKADKARTRGKKGGTGLGL------AIAKNIVQGHDGKISVSSVV 576

Query: 799 AKGTLIEIIFP 809
            +GT   +  P
Sbjct: 577 GEGTTFSVYLP 587


>gi|307151519|ref|YP_003886903.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306981747|gb|ADN13628.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 1426

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 82/261 (31%), Positives = 135/261 (51%), Gaps = 20/261 (7%)

Query: 563  EWKQEKN------KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            E KQ          L  AK+ AE  +  KS+F+A +SHEIRTP+  +IG + ++ +    
Sbjct: 753  ERKQRSELALKNIALEGAKREAEAANKAKSEFVAMMSHEIRTPMNGVIGMTGILLDTPLS 812

Query: 617  PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
             L      +    I  SG+ +L I+ND+LD SKIESGK+ L  +P +L E++  ++ L+ 
Sbjct: 813  EL----QRDCVETIRNSGDALLMIINDILDFSKIESGKLELEEQPFNLRESIESSLDLLA 868

Query: 677  LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
              A EK + +   F  N P  IL D+  ++QI +N++ N I FT  G +++++ +    E
Sbjct: 869  PKAAEKGLELAYIFDPNTPETILGDVTRLRQILVNLIGNGIKFTEKG-EVVVNVSSYPQE 927

Query: 736  E--------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
            +        +   V DTG+G+     +K  K F Q+ +S   +  GTGLGL ++K +   
Sbjct: 928  KSSTAPTYTIEFAVTDTGIGIAPERKDKLFKAFSQVDSSTTRQYGGTGLGLVISKRLTQL 987

Query: 788  NMGKFYIFSTPAKGTLIEIIF 808
              G+  + S   KG+  +   
Sbjct: 988  MGGEISVDSQQGKGSTFKFTI 1008



 Score =  106 bits (265), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 42/336 (12%), Positives = 92/336 (27%), Gaps = 20/336 (5%)

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
             ++    S LP+      + +          T     +         +   + A   E 
Sbjct: 254 AEIIAKLNSPLPKVVLVAGLLIGSMLAVALHSTETGRHRSRQLEQEILHRQQVEASLREA 313

Query: 319 ENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEI-AGGLSTLLDAPKLS 376
             L    VD            G +   N +   +  YK+ + +      +       +  
Sbjct: 314 SRLQQAIVDGANYSIISANPEGIIQAFNRAAEQMLGYKAEEVVGKFTPEIIHDPQEIQTR 373

Query: 377 DNNAIKPVMLYRSDRTCIAA--------SARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
                + + +       +             + T      +S ++        +   +  
Sbjct: 374 AKELSQELGMKIEPGFEVLVAKARQGQKDENIWTYIRKDGSSFSVLLSITALYDDQGQIS 433

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQL---CSILEATSDGIAIINREGIILSTNRAVSKLF 485
              GI  +  +    ++ +E  + +L    S L+  +  +AI N +G+I   N    +L 
Sbjct: 434 GFLGIGSDRTERLQTQKDLENTLRELTFQKSALDEAAI-VAITNAKGVIKYVNDKFCQLS 492

Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
            Y  E+++     +    + P     +L   +S       +      TK      +   I
Sbjct: 493 QYSREELIGNTHRIVKSDHHPPDFFKHLWSTISQGK--IWQGEIKNKTKNGSYYWVDTTI 550

Query: 546 KKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKI 577
                       Y     DI+  K  +  L    K 
Sbjct: 551 VPFLDVQGKPFQYLAIRFDITNRKYIEQALQKELKQ 586



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 62/179 (34%), Gaps = 19/179 (10%)

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
           +E E +  +  +  +        +I++  +  I   N EGII + NRA  ++ GY  E++
Sbjct: 296 LEQEILHRQQVEASLREASRLQQAIVDGANYSIISANPEGIIQAFNRAAEQMLGYKAEEV 355

Query: 493 LRK-PFTVFLEQNTPSVMNHYLTE-------------ILSLDLRQTLEKITLGSTKEEKL 538
           + K    +  +          L++             +      Q  E I     K+   
Sbjct: 356 VGKFTPEIIHDPQEIQTRAKELSQELGMKIEPGFEVLVAKARQGQKDENIWTYIRKDGSS 415

Query: 539 LSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
            S+ + I  L         +     D +E  Q +  L +  +    + S   +  A V+
Sbjct: 416 FSVLLSITALYDDQGQISGFLGIGSDRTERLQTQKDLENTLRELTFQKSALDE-AAIVA 473



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 34/252 (13%), Positives = 74/252 (29%), Gaps = 23/252 (9%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH----------------IDPNNHI 133
           +  G ++  +    + +G  A +++G    ++                     I+P   +
Sbjct: 332 NPEGIIQAFNRAAEQMLGYKAEEVVGKFTPEIIHDPQEIQTRAKELSQELGMKIEPGFEV 391

Query: 134 GDLLKR-QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNR--VD 190
                R         T    +G++    + L+   +Y    + SGF G G     R    
Sbjct: 392 LVAKARQGQKDENIWTYIRKDGSSF--SVLLSITALYDDQGQISGFLGIGSDRTERLQTQ 449

Query: 191 NDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK 250
            D     + L  + S L E      +  K      + +        + ++   T      
Sbjct: 450 KDLENTLRELTFQKSALDEAAIVAITNAKGVIKYVNDKFCQLSQYSREELIGNTHRIVKS 509

Query: 251 DDVLKTEKYPLLTS--EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
           D         L ++  +      +    T N + Y          +   + F+YL+ R  
Sbjct: 510 DHHPPDFFKHLWSTISQGKIWQGEIKNKTKNGSYYWVDTTIVPFLDVQGKPFQYLAIRFD 569

Query: 309 PSLSAYFDEGEN 320
            +   Y ++   
Sbjct: 570 ITNRKYIEQALQ 581



 Score = 43.5 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 20/133 (15%), Positives = 45/133 (33%), Gaps = 5/133 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKRQNTWYGKT 147
            +A G +K ++++  +       ++IG     V SD    D   H+   + +   W G+ 
Sbjct: 475 TNAKGVIKYVNDKFCQLSQYSREELIGNTHRIVKSDHHPPDFFKHLWSTISQGKIWQGEI 534

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                 G+  +V   +  +P      +   F+   I              ++  K+   L
Sbjct: 535 KNKTKNGSYYWVDTTI--VPFLDVQGKP--FQYLAIRFDITNRKYIEQALQKELKQTLLL 590

Query: 208 HEIKKGHSSVEKE 220
            +I +      + 
Sbjct: 591 KQISQKIRESLEP 603


>gi|282163504|ref|YP_003355889.1| putative histidine kinase [Methanocella paludicola SANAE]
 gi|282155818|dbj|BAI60906.1| putative histidine kinase [Methanocella paludicola SANAE]
          Length = 778

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 106/751 (14%), Positives = 231/751 (30%), Gaps = 63/751 (8%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK--RQNTWYG 145
             D  G L   +E   K  G  A +++G  +              +  +++   +     
Sbjct: 65  RWDLKGNLTFFNEFAEKFFGYRAGEVLGRNVIGTIVPEAESTGRDLMAMIRDIERQPECY 124

Query: 146 KTTL---WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
           KT L      +G    V I      +             G  +            ++ ++
Sbjct: 125 KTNLNENICRDGE--RVWISWTNKAVRDAQGNVVEILSVG--NDITERKRAEESLRQRER 180

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSP-------PPHLRMKNKVSSLTEYYAHKDDVLK 255
           + +    +    S          +           PP      +       +    +   
Sbjct: 181 QLAEAQALTDTGSWEMDLATGEITYSDHMLRILHLPPGRHTYREF--EERIHPEDRERRD 238

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
            E    + S E            + +          + + S    ++ S     +     
Sbjct: 239 AELMAGIKSTER-REVDYRIVLPDGSVRHIHAMGKAILDPSGRPVKFSSTIQDITGWREA 297

Query: 316 DEGENLTPE----TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
           +E    + E      +     F++Y      Y N + + LT Y +V+ + +        D
Sbjct: 298 EEALRESEEKFRVLAESSSAMFWLYQGDRFIYVNDAGVRLTGYTAVELMRMN-----FWD 352

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
                D   ++   L R     +     +  +  + E                P      
Sbjct: 353 VVHPDDQGLVRERGLARQRGETVPQKYEVKLLTKSGEIRWVEVNAGRIVYRGKPAG---I 409

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
               +  + ++ +  +        +  E  + G+    ++G  L  N+    + GY   +
Sbjct: 410 ATFFDITERKMAEEALRKSEENFRAAFEQAAVGMTHARKDGRFLRVNQKFCDITGYTRGE 469

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
           +++            +     +  +L+     TL        K+  ++ + + +  +  +
Sbjct: 470 LVKMSAMDITYPPDMAAEVRLIKRMLA-GELSTLTSEKRYVRKDGAIVWVNLTVTPIYHN 528

Query: 552 SC---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                      DI+E K  + +L  AK  AE        +L  + H+I     A +G+ E
Sbjct: 529 GALEYLMGITEDITERKLAEEELKSAKSQAEL-------YLDLMGHDINNIHQAALGYLE 581

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
           + ++     +      EY +    + +    ++N++  + K +  +M  H   V +   +
Sbjct: 582 LARD-----VPCEAREEYMDKASEALHRSAQLINNVRKLQKYQDNRMQAH--DVDVCAVL 634

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
           +E         N K + +  +       + AD   +  +  N++ NAI  T    +I IS
Sbjct: 635 TEVHREY-TMTNGKSVALNFNGCKRC-TVRAD-DLLHDVFSNLVGNAIKHTGDNARISIS 691

Query: 729 --TTHTSNEE-VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
             T      E   +RV D G G+     +   K           R +G GLGL + K +V
Sbjct: 692 LDTARKDGAECCRVRVDDDGPGIPEESKKTLFKR----SLKGTPRAKGMGLGLYIVKTLV 747

Query: 786 DANMGKFYIFST-PA---KGTLIEIIFPLYD 812
           +   G+ ++    P    KG    ++ P  +
Sbjct: 748 ENYRGEVWVEDRVPGDHTKGARFVVVLPALE 778



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/206 (13%), Positives = 68/206 (33%), Gaps = 11/206 (5%)

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
               E+   +     +     +   ++E  +  I   + +G +   N    K FGY   +
Sbjct: 30  AATLENAQCKSTLEALRESEAKYRYLVENANSIIIRWDLKGNLTFFNEFAEKFFGYRAGE 89

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST--KEEKLLSLRIIIKKLP 549
           +L +     +     S     +  I  ++ +    K  L     ++ + + +    K + 
Sbjct: 90  VLGRNVIGTIVPEAESTGRDLMAMIRDIERQPECYKTNLNENICRDGERVWISWTNKAVR 149

Query: 550 FSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
            +           +DI+E K+ +  L   ++   +  +        +  ++ T     I 
Sbjct: 150 DAQGNVVEILSVGNDITERKRAEESLRQRERQLAEAQALTDTGSWEM--DLAT---GEIT 204

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYID 631
           +S+ +      P G   Y E+   I 
Sbjct: 205 YSDHMLRILHLPPGRHTYREFEERIH 230


>gi|229071148|ref|ZP_04204374.1| hypothetical protein bcere0025_33220 [Bacillus cereus F65185]
 gi|228712088|gb|EEL64037.1| hypothetical protein bcere0025_33220 [Bacillus cereus F65185]
          Length = 510

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 97/523 (18%), Positives = 195/523 (37%), Gaps = 39/523 (7%)

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDD 359
            + +                +     +  P     +   G + + NPS   +  Y S++ 
Sbjct: 13  RHPNISRRLRNHIQDRSLTEMYASLFEHNPDSIISLNLEGVILHINPSAERILGYTSLE- 71

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
           +E     S L         +  + V+    +         + +I       L +      
Sbjct: 72  LEQKNITSIL-------GAHISEQVLQNIKNTEADNQQEYILSIYHKNGFLLDVVTKLVP 124

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
              Q         ++P +   RI +  ++    +L +++ +    +   + EG  L  N 
Sbjct: 125 IFVQNRLTGVYAIMKPLEKSERI-ENMLKESEKRLRTLVNSMPAFVIFKDHEGRWLEAND 183

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMN----HYLTEILSLDLRQTLEKITLGSTKE 535
                F +       K  +  ++ N            + E+     RQ L        ++
Sbjct: 184 YALSCFNFHHVPYHGKKDSELIQYNEAYREAFLHCEEVDELAWQ-QRQILHGEEFIIHRD 242

Query: 536 EKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
           +  L L I    L           +   D++E K+ +  L  ++K+A           A 
Sbjct: 243 DFDLILSISKVPLYHPDGSRKGLIVMGRDVTELKETEKLLRKSEKLAVV-----GQLTAG 297

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           ++HEIR PLT++ GF  ++      P  N     Y + +    + +  I +  + +SK +
Sbjct: 298 IAHEIRNPLTSLKGFLTLLL-----PEINEEQKWYIDVMLSEISQMESITSQFMAMSKPQ 352

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
                L  +  ++   + E ++ +   A    + I     + +  I  D   +KQ+ +NI
Sbjct: 353 ----VLSIQTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYVYDIQCDGNQLKQVFINI 408

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           L NAI   P+GG I I T    +  +++R+ D G G+    + +  +PF        ++ 
Sbjct: 409 LKNAIEAMPNGGNIFIQTKPLEDNFILIRIIDEGCGIPEDRISRLGEPFY------SLKE 462

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           +GTGLGL +   +++ + GK +I S   KGT+++I  PL  + 
Sbjct: 463 KGTGLGLMMCYKIIEEHHGKLHISSELNKGTIVDIELPLSSSH 505


>gi|229080856|ref|ZP_04213373.1| hypothetical protein bcere0023_34990 [Bacillus cereus Rock4-2]
 gi|228702434|gb|EEL54903.1| hypothetical protein bcere0023_34990 [Bacillus cereus Rock4-2]
          Length = 516

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 97/523 (18%), Positives = 195/523 (37%), Gaps = 39/523 (7%)

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDD 359
            + +                +     +  P     +   G + + NPS   +  Y S++ 
Sbjct: 19  RHPNISRRLRNHIQDRSLTEMYASLFEHNPDSIISLNLEGVILHINPSAERILGYTSLE- 77

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
           +E     S L         +  + V+    +         + +I       L +      
Sbjct: 78  LEQKNITSIL-------GAHISEQVLQNIKNTEADNQQEYILSIYHKNGFLLDVVTKLVP 130

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
              Q         ++P +   RI +  ++    +L +++ +    +   + EG  L  N 
Sbjct: 131 IFVQNRLTGVYAIMKPLEKSERI-ENMLKESEKRLRTLVNSMPAFVIFKDHEGRWLEAND 189

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMN----HYLTEILSLDLRQTLEKITLGSTKE 535
                F +       K  +  ++ N            + E+     RQ L        ++
Sbjct: 190 YALSCFNFHHVPYHGKKDSELIQYNEAYREAFLHCEEVDELAWQ-QRQILHGEEFIIHRD 248

Query: 536 EKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
           +  L L I    L           +   D++E K+ +  L  ++K+A           A 
Sbjct: 249 DFDLILSISKVPLYHPDGSRKGLIVMGRDVTELKETEKLLRKSEKLAVV-----GQLTAG 303

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           ++HEIR PLT++ GF  ++      P  N     Y + +    + +  I +  + +SK +
Sbjct: 304 IAHEIRNPLTSLKGFLTLLL-----PEINEEQKWYIDVMLSEISQMESITSQFMAMSKPQ 358

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
                L  +  ++   + E ++ +   A    + I     + +  I  D   +KQ+ +NI
Sbjct: 359 ----VLSIQTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYVYDIQCDGNQLKQVFINI 414

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           L NAI   P+GG I I T    +  +++R+ D G G+    + +  +PF        ++ 
Sbjct: 415 LKNAIEAMPNGGNIFIQTKPLEDNFILIRIIDEGCGIPEDRISRLGEPFY------SLKE 468

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           +GTGLGL +   +++ + GK +I S   KGT+++I  PL  + 
Sbjct: 469 KGTGLGLMMCYKIIEEHHGKLHISSELNKGTIVDIELPLSSSH 511


>gi|124003289|ref|ZP_01688139.1| two-component hybrid sensor and regulator [Microscilla marina ATCC
           23134]
 gi|123991387|gb|EAY30818.1| two-component hybrid sensor and regulator [Microscilla marina ATCC
           23134]
          Length = 1269

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 72/249 (28%), Positives = 129/249 (51%), Gaps = 3/249 (1%)

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            ++ + +L+   +  E  + +KS+FLA  SHEIRTPL  IIG +E + +   GPL N + 
Sbjct: 572 LEKARLELARRTEQLELANKYKSEFLANTSHEIRTPLNGIIGLTESLIDGAAGPL-NEKT 630

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
           +     I+ S   +  +VND+LD S++E+ ++ +  +P      V   + + +    +K 
Sbjct: 631 MSNLELINSSAIRLSTLVNDILDFSRMENHELGIQRKPTDFYAIVDVVVRVSRELIGDKD 690

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
           +++  +   +IP I  D   ++QI  N++ N I FT SG Q+ +S   T    + + V+D
Sbjct: 691 LVLVNTIGKDIPIIEGDENRLQQILYNLIGNGIKFTESG-QVTLSAKTTD-AFLSVSVKD 748

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TG+G++    ++  + F Q   S      GTGLGL ++K +V+ + G   + S   KG+ 
Sbjct: 749 TGIGISPESQDRIFESFEQEDGSTSRNYGGTGLGLAISKELVELHGGTIQLKSEVGKGSE 808

Query: 804 IEIIFPLYD 812
                P+  
Sbjct: 809 FIFTLPISQ 817


>gi|229109031|ref|ZP_04238632.1| hypothetical protein bcere0018_13040 [Bacillus cereus Rock1-15]
 gi|228674500|gb|EEL29743.1| hypothetical protein bcere0018_13040 [Bacillus cereus Rock1-15]
          Length = 591

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 80/371 (21%), Positives = 153/371 (41%), Gaps = 39/371 (10%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            ++ E  QL SIL + +DG+  +N+EG ++  N           E+       + L +  
Sbjct: 249 ALQQEKEQLASILSSMADGVITLNQEGEVVVINPPAEHFLQVWQEEK-----EIELSKKL 303

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
           PS +      ++  + +Q +E        +   + L   +            + D++E +
Sbjct: 304 PSELVELFHLVVESEQQQVVEINLQ----KGNYVVLMTPLYNQTKIRGAVAVLRDMTEER 359

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + +                + DF+A VSHE+RTP+  + G+SE I +            E
Sbjct: 360 RLE--------------KMRQDFIANVSHELRTPMVMLQGYSEAILDDIVQT--KEEIDE 403

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           +   I      +  +VN+LLD++++ESG + LH   V +   V +     Q  A +K + 
Sbjct: 404 FVQIIYDESVRLGKLVNELLDLARMESGHVELHIGEVDIHPFVEKIGRKFQGIAKDKEVA 463

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +   F   I +   D   ++Q+  N++ NAI  T +GG + +     +N  +I  V+D+G
Sbjct: 464 LTVDFKGPIEQYPFDADRMEQVLTNLIDNAIRHTNAGGHVTLVIDTKNNG-LIFEVQDSG 522

Query: 746 VGMTNYELEKAMKPFGQIPNSQQI-------RGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
            G+   ++      F +   ++          G        +AK +V  + GK  + S  
Sbjct: 523 AGIPEEDIPFLFDRFYKADKARTRGKKGGTGLGL------AIAKNIVQGHDGKISVSSVV 576

Query: 799 AKGTLIEIIFP 809
            +GT   +  P
Sbjct: 577 GEGTTFSVYLP 587


>gi|159900772|ref|YP_001547019.1| multi-sensor hybrid histidine kinase [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159893811|gb|ABX06891.1| multi-sensor hybrid histidine kinase [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 804

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 96/655 (14%), Positives = 219/655 (33%), Gaps = 45/655 (6%)

Query: 176 SGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR 235
           +G+ G   +        P  +   L    +   ++ +    +  +   I           
Sbjct: 34  TGWEGLAFLK----QRQPDLILLDLQLPDTSGLDVLRQMGELGYDIPVILMTAHGTEQTA 89

Query: 236 MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN 295
           ++        Y     D  +          E  L  +++  T  L Q  ++    +    
Sbjct: 90  VEAFRLGAKNYLIKPFDASEAGAAIERALRERRLQREKEVLTRTLQQRLQELTILSSVGK 149

Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYK 355
           S  S   L       + A            +      + +   G+  Y           +
Sbjct: 150 SVTSLLDLEELLERIVDAGVY---------LTHAEEGYLLLRDGDELYL--RAAKNLGEE 198

Query: 356 SVDDIEIA---GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
            V    +         ++   K    +  +   L       + A  ++  I       + 
Sbjct: 199 RVQRFRVKMDDNVAGQVIRTVKPIRLDRSQHQDLKLRTGLLVQAMLQVPLIVGRHAIGVL 258

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM----EIEVMQLCSILEATSDGIAII 468
                 ++      +        +     I   ++         +   + +  +D I  +
Sbjct: 259 AVDNRVQQRTFSENDQYLLSAIADYAAIAIENSRLFKSTRDSEQRYRELFDNANDMIFTL 318

Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528
           + +  I S NR   KL G  V +++++        +  + + H L   L+          
Sbjct: 319 DPQLRIASINRQGVKLLGMTVAEMMQRTLISLCVPDDQAAIEHQLQRQLAKAAGDGGAFP 378

Query: 529 TLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
                   + L + +  + +              D+++ ++ + +L  A+K+     S  
Sbjct: 379 LTLRRANGEDLHIEVSAQLMQRGDQVIGLHCIARDVTDRRRLELQLLQAEKL-----SAI 433

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
              +A V+HE+  P+T+I GF+E++  ++     +       NYI+        IV +LL
Sbjct: 434 GQLVAGVAHELNNPMTSIKGFAELLLRRKD---LDDDARTDLNYINNQAERAARIVTNLL 490

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
             ++    +       V +++ + + +SL   +     I ++  F   +P  +AD   ++
Sbjct: 491 TFAR----EHQPQRVLVDVNKVIDDTLSLHSYHLRVDNIKVQRQFEPELPTTVADPYQLQ 546

Query: 706 QIALNILSNAIHFTPS---GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
           Q+ LN++ NA         GG + + T    + E+ + + DTG G+  + + +   PF  
Sbjct: 547 QVFLNLIGNAHQAMAEKGGGGFLTVKTERVDD-EIRINIGDTGPGIPQHLVGRIFDPFFT 605

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
                   G+GTGLGL +   ++  + G  ++ S   +GT   +  P+    +P 
Sbjct: 606 TKP----VGKGTGLGLSICYNILHDHGGNIWVDSVANEGTTFHLALPVVQGDNPE 656



 Score = 40.8 bits (94), Expect = 0.89,   Method: Composition-based stats.
 Identities = 22/191 (11%), Positives = 54/191 (28%), Gaps = 9/191 (4%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH---IDPNNHIGDLLKRQNT 142
            + +D    +  I+ +  K +G    +M+   L  +        I+            + 
Sbjct: 315 IFTLDPQLRIASINRQGVKLLGMTVAEMMQRTLISLCVPDDQAAIEHQLQRQLAKAAGDG 374

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
                TL    G +L+  I+++A  +   + +  G     I               + +K
Sbjct: 375 GAFPLTLRRANGEDLH--IEVSAQLMQRGD-QVIGLH--CIARDVTDRRRLELQLLQAEK 429

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA-HKDDVLKTEKYPL 261
             +    +      +      I          +  +  +     Y  ++ +        L
Sbjct: 430 LSAIGQLVAGVAHELNNPMTSIKGFAELLLRRKDLDDDARTDLNYINNQAERAARIVTNL 489

Query: 262 LTSEESSLPEQ 272
           LT      P++
Sbjct: 490 LTFAREHQPQR 500


>gi|163846746|ref|YP_001634790.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222524558|ref|YP_002569029.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
 gi|163668035|gb|ABY34401.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222448437|gb|ACM52703.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
          Length = 742

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 92/650 (14%), Positives = 230/650 (35%), Gaps = 46/650 (7%)

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY 246
            R+     A G    ++       + G+  ++                 +   +      
Sbjct: 92  VRLRPGEGAAGLAWQRETVIQQHGEHGYRELQGIASPQAQTVFQAIGDLLPRSLLVTAIP 151

Query: 247 YAHKDDVLKTEKYPLLTSEESSL--PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
                 ++   +     +E   +   + E    I        Q +  L+ + +    + +
Sbjct: 152 LRAGHTLVGVLELASNANEPLGIEMADFEVIAGIVAAAIRNAQLYDELRRSHQRLKAFDA 211

Query: 305 HRNHPSLSA-YFDEGENLTPETVDKCPI---PFFVYSHGNLFYANPSFLLLTKYKSVDDI 360
                S +A   D  +++    ++  P       ++          ++  +    ++   
Sbjct: 212 VVTSISTAADLPDLVQSVLTVVLELTPAQSGALLIFDPAQERLQVSAWCNI-DLTALACF 270

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
           +     +T           A +P++  R +   I A                   +    
Sbjct: 271 DQVSVDATPCAEVVRYGQPAFRPLLSERGESALIEAGMAAAAYLPLLAGGTVTGVLALFG 330

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKME------IEVMQLCSILEATSDGIAIINREGII 474
             +  + + ++ + P           +        E  +  +++E+ ++G+ + +R G +
Sbjct: 331 DIELTKAIDKDMLMPICNQVGFAIANVRLYEDSQHERRKFHTVIESIAEGVLLCDRYGRL 390

Query: 475 LSTNRAVSKLFG-----YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
              N+A   L       +              + +  ++    L    +L      +   
Sbjct: 391 TLANQAAHDLLSCATLSFETPLATVPDLYDLRDLDGNALTPDDLPFTRALRGETFYDYRV 450

Query: 530 LGSTKE--EKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
           +    +  E+  S                 +T  DI+  ++ +                K
Sbjct: 451 MRRLPDNSERFFSFSGAPAVNEQGEVEGAVITFRDITATQKVQ--------------RAK 496

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
            +FLA  +HE+R+PL A+  +++++  +     G+ R +     + +    +L +V++LL
Sbjct: 497 DEFLAVAAHELRSPLAAVRSYADLLLRREQQREGDHRDLHGLTILSQQVAHMLRLVDNLL 556

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
           D+S++++G+ +L ++ V+L     + I   +  A ++ +L+    A     +  D   ++
Sbjct: 557 DVSRLDAGQFDLQYQQVNLVGLAQQVIDQQRPNAGQRDLLLEAESAE--LMVTCDAMRIR 614

Query: 706 QIALNILSNAIHFTPSGGQIIISTTH-----TSNEEVILRVRDTGVGMTNYELEKAMKPF 760
           Q+  N++SNAI ++P    I +          +   V++ V D G G+   E E+  + +
Sbjct: 615 QVLTNLISNAIKYSPPDSVISVRLRSATLLNNNAPAVLISVSDQGPGIPPEEQERVFQRY 674

Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            + P     R EG GLGL L++ +V  + G+ +I S   +G+   ++ P+
Sbjct: 675 YRAPG---RRAEGLGLGLYLSREIVQLHGGQIWIESREGQGSTFMVLLPV 721


>gi|298376398|ref|ZP_06986353.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_19]
 gi|298266276|gb|EFI07934.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_19]
          Length = 524

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 100/530 (18%), Positives = 201/530 (37%), Gaps = 59/530 (11%)

Query: 318 GENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
            E        K P+   VY   G L   N +   L      D + I      L + P   
Sbjct: 11  EEMSFNALFQKLPVGIEVYDERGQLVDLNRTDENLFAISRKDIMGIN-----LFENPNFP 65

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQ---------WNRENSLAMTFIPFEKANQFPEN 427
           ++       L + +      +     IQ              +L ++        +  + 
Sbjct: 66  EDKI---ARLKQGEMVVFDCNYEFDNIQTNEYYNIDPKKEGINLRLSIKCVPLKGEAEDI 122

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA---------IINREGIILSTN 478
                +  ++ +      K+E    +L +++  +   +           I+ +  +L  N
Sbjct: 123 CGYVLMFTDETEEYQKSEKVEELFTKLKTVMRCSDSLLWEYDVKTDKMHIDLDLRVLG-N 181

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS-TKEEK 537
           ++  +          +K F   +       +   +     + + +  E         E +
Sbjct: 182 KSRLRASNLT----TKKDFCEIVYPEDRERVL--VQGFEKIVMGEIGEYSIQYRQLFEGQ 235

Query: 538 LLSLRIIIKKLPFSSC-----YSLTMHDISEWKQEKNKLSHAKKI----------AEKES 582
            + +R       +            + DI++    ++KL  A++           A++ +
Sbjct: 236 YVWVRAYAYPYKYDEAGRPAKILYYLMDITDEIAMQDKLRWAERERQRKEYELVKAKEAN 295

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
             KS FLA +SHEIRTPL AI+GF+ ++   +        +  Y + ID++  L+L ++ 
Sbjct: 296 RLKSMFLANMSHEIRTPLNAIVGFANILAETKEIEEEEREF--YVDIIDKNSELLLQLIE 353

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702
           D+LD SKIE+G  ++        E   E  ++  L    K +       +    + +D +
Sbjct: 354 DILDFSKIEAGTFDITKRNFDFKEICEETYAVHALKIP-KNVRFVFDRGSQPVTVFSDPK 412

Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
            V Q+  N L+NAI FT  G +I ++   + + E+ + V DTG+G++  +       F +
Sbjct: 413 RVVQVISNFLTNAIKFTSEG-EIKLAYKVSKD-EIRVSVSDTGMGISEEDCRTIFDRFVK 470

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
           +   +    +GTGLGL + K +++   G+  + ST   G+      PL +
Sbjct: 471 LNACK----QGTGLGLAICKNIIEKLGGRIGVESTLGVGSTFWFTLPLKE 516


>gi|170737061|ref|YP_001778321.1| multi-sensor hybrid histidine kinase [Burkholderia cenocepacia
           MC0-3]
 gi|169819249|gb|ACA93831.1| multi-sensor hybrid histidine kinase [Burkholderia cenocepacia
           MC0-3]
          Length = 1237

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 112/652 (17%), Positives = 238/652 (36%), Gaps = 37/652 (5%)

Query: 184 VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL 243
             V +   D   +      +  +     +  + V       F+ ++  P +      + L
Sbjct: 226 ATVRQQIPDAEIVVAASAHQAMNAVAEGRADAYVGNAAIVDFNIRNYFPGILKIASPADL 285

Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSLPEQE--------DFHTINLNQYTKKQYFGTLQNN 295
               +   +       PL+    +++P++E         +   +     K      L   
Sbjct: 286 DSRLSIAVNRRYERLIPLIDRALAAIPKREQQRIRSRWLWPRYSAGLPWKTFELVLLGTA 345

Query: 296 SKESFEYLS-------HRNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPS 347
              +    +        R   ++     +  +     ++  P P     S       N +
Sbjct: 346 IVLATITTAYVRLRREVRRRLAVEHELADQLSFREALMESLPYPLVAKDSANRYIALNHA 405

Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
           +      K  + I      ++ LD       +A+      R         A +  +  ++
Sbjct: 406 YETAFSVKRDELIGKTTLDASPLDHQWNRRIHAMSE----RVQDQQQPHHAEVSLMDSDQ 461

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
           +    + +          +         +    R  +++      +L  +       +  
Sbjct: 462 KQRSWL-YWMHPFQLPSGKPGGLLVTLVDVTTIRDAEQRARALDQRLRRVTAHLPAVVFE 520

Query: 468 I--NREGIILST----NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
           +    +G++       N            +         +  +   ++   +        
Sbjct: 521 LRRTPDGVLRFPYVGGNTHAMWDLDAQTMEDDALTVLSRVHPDDRPLIKSAVKHSALTMK 580

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS-LTMHDISEWKQEKNKLSHAKKIAEK 580
           R +++   L     E+ +      +     + +      D++  K +  +L+HAK+ AE 
Sbjct: 581 RVSIDFRCLS-HGCERWIHTEATPQTEHDGTIFWSGVWSDVTHIKAQAKELAHAKEAAEL 639

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            ++ K+ FLA +SHEIRTP+  I+G  E+++++        +     + I  S   ++ I
Sbjct: 640 AAASKARFLATMSHEIRTPMNGIVGMLELLRHESLSL----KQQRMLHMIGESAMTLMQI 695

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILA 699
           ++D+LD SKI++G++ +  EP  L   +    ++    A++K +++R   ++ +   +  
Sbjct: 696 LDDVLDFSKIDAGQLEIVNEPTDLRALLDGVSAVAGTLAHDKGLVVRNFVSHRLAAELEI 755

Query: 700 DLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDTGVGMTNYELEKA 756
           D   ++QI  N+LSNAI FT SG    ++ I     + + V   V DTG+G+T  +L+  
Sbjct: 756 DGLRLRQILFNLLSNAIKFTESGEVGIRVEIIDCRNACQRVRFTVHDTGIGITPAQLQCL 815

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
             PF Q   S   R  GTGLGL + K +V+   G   I STP  GT + + F
Sbjct: 816 FAPFTQADTSISRRFGGTGLGLAICKRLVELMQGSIRIESTPRIGTHVIVEF 867


>gi|116753389|ref|YP_842507.1| PAS/PAC sensor signal transduction histidine kinase [Methanosaeta
           thermophila PT]
 gi|116664840|gb|ABK13867.1| PAS/PAC sensor signal transduction histidine kinase [Methanosaeta
           thermophila PT]
          Length = 377

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 87/364 (23%), Positives = 162/364 (44%), Gaps = 19/364 (5%)

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           I+E     I I++R   +L  NR          ++ +    +          +N  + ++
Sbjct: 14  IIETIPSTIIIVDRRLEVLYANRNFYLKSFRTEKNAIGMHLSKIFSPVFMQRLNSRIEKV 73

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS----LTMHDISEWKQEKNKLS 572
            S       E+I        +       I  L  +  Y     + + DI+E  + + +L 
Sbjct: 74  FSAGEPFDGEQI---RYPGGRFY--FYRIHPLKEAGGYVSKAVIFIEDITEMTRLEEELR 128

Query: 573 -------HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
                  +A    ++  S KS+F++ VSHE+RTPLT I  + E+ ++   G L +    E
Sbjct: 129 DSYIKLENAYAELKELDSIKSEFVSMVSHELRTPLTVINSYIEMFEDGMLGDLTD-VQKE 187

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
               I    + ++ +VND+LDI +I S ++ L  E  S++E +   I+ +   A  K   
Sbjct: 188 KLQLIRSQTDTMIQLVNDMLDILRIGSRRLRLKKELSSMEELIRSVIASLSRLAALKEHT 247

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           I          I  D + + Q+  N+L+NAI +TP  GQI +       E V++ +RD G
Sbjct: 248 ITFRCERANTLIECDPKKIMQVLSNLLTNAIKYTPDRGQIEVVLG-GDAENVLVSIRDNG 306

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+   + ++  + F  + ++++    G GLGL + K +V+A+ G+ +  S   +G+   
Sbjct: 307 IGIREEDKDRIFEKFF-VMSNEKSADIGMGLGLSITKDIVEAHGGRIWFESRFGEGSTFY 365

Query: 806 IIFP 809
              P
Sbjct: 366 FTLP 369


>gi|237732270|ref|ZP_04562751.1| sensor protein RcsC [Citrobacter sp. 30_2]
 gi|226907809|gb|EEH93727.1| sensor protein RcsC [Citrobacter sp. 30_2]
          Length = 948

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 99/426 (23%), Positives = 175/426 (41%), Gaps = 35/426 (8%)

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
           +     L  I+      + +  I           M     E        +  +   E  Q
Sbjct: 303 VPVDLVLERIRM-----MILNAILLNVLVGAALFMLTRMYERRIFIPAESDAQRLEEHEQ 357

Query: 454 L-CSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
               I+ +   GI I+   +GI + +N            +  ++                
Sbjct: 358 FNRKIVASAPVGICILRTMDGINILSNELAHTYLNMLTHEDRQR---------------- 401

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571
            LT+I+       ++      T     L +  +  +    +     + D+S   + +  L
Sbjct: 402 -LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSARVKMEESL 456

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
               + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R       ++
Sbjct: 457 QEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPSGVDR---LVTAMN 512

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
            S +L+L I++D+LD SKIES ++ +     S  E ++   +        K++ +     
Sbjct: 513 NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFID 572

Query: 692 NNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
            ++P  +  D   ++Q+  N+LSNAI FT +G  I++    +  + + +RVRDTGVG+  
Sbjct: 573 PDVPVALNGDPMRLQQVISNLLSNAIKFTDTG-CIVLHVQCS-GDYLSIRVRDTGVGIPA 630

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+   +  PL
Sbjct: 631 KEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTLRIPL 690

Query: 811 YDTSHP 816
           Y   +P
Sbjct: 691 YGAQYP 696


>gi|75909568|ref|YP_323864.1| periplasmic sensor signal transduction histidine kinase [Anabaena
           variabilis ATCC 29413]
 gi|75703293|gb|ABA22969.1| Periplasmic Sensor Signal Transduction Histidine Kinase [Anabaena
           variabilis ATCC 29413]
          Length = 575

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 77/280 (27%), Positives = 133/280 (47%), Gaps = 9/280 (3%)

Query: 544 IIKKLPFSSCYSL--TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
                              I    +   +L  AK++AE  S  KS FLA VSHE+RTPL 
Sbjct: 296 APVTTEDEIGLLAKSLNRLIERVSERTKELEQAKELAEAASKAKSIFLANVSHELRTPLN 355

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           A+IG S+++K+       +  +      I+ +G  +L+++ND+LD+SKIE+GKM L+ E 
Sbjct: 356 AVIGLSQLLKDDAADLSLSGEFTSDLETINSAGRHLLELINDILDLSKIEAGKMTLYPEI 415

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
             +   ++  +  V+    +   ++      ++  + AD   ++Q+ LN+LSNA  FT +
Sbjct: 416 FDVVTLINNVVLTVKPTIEKNNNILEIYCDEHLGTMYADQTRMRQVLLNLLSNAAKFTTN 475

Query: 722 GG-QIIISTTHTS------NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           G  ++ +               +   V DTG+GM+  +  +  +PF Q   S   +  GT
Sbjct: 476 GSIKLTVRREKEDFLAEMPFGAISFTVSDTGIGMSPSQQLQLFQPFTQGDTSTTKKYGGT 535

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           GLGL +++       G+  + S P  G+   +  PL + S
Sbjct: 536 GLGLAISRHFCQMMGGEIIVKSQPGLGSTFTVYLPLQEQS 575


>gi|148255785|ref|YP_001240370.1| multi-sensor hybrid histidine kinase [Bradyrhizobium sp. BTAi1]
 gi|146407958|gb|ABQ36464.1| multi-sensor hybrid histidine kinase [Bradyrhizobium sp. BTAi1]
          Length = 772

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 80/386 (20%), Positives = 164/386 (42%), Gaps = 25/386 (6%)

Query: 438 VDTRINKRKMEIEVMQLCSIL----EATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
           ++    + + E +   +  +L    E  +  +   + EG ++   +  + +   P++ + 
Sbjct: 225 LENLKAQIRHERQNETISLLLKEFQENAASWLWQTDAEGRLIDAPQRFADVAQLPLDQLK 284

Query: 494 RKPFTV---FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
            +       +L     + +  +   +        +    + +  E +  +L     +   
Sbjct: 285 GERLVDTLEYLCPTDTATLATFADRMARRLSIPEILIHVVVAGGERRRWALTARPARDYE 344

Query: 551 S--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
              + Y     D++E  + +         AE ES  KS+FLA +SHEIRTP+  ++G + 
Sbjct: 345 GKFAGYRGFGRDVTERWRAEQ--------AEAESRAKSEFLAMMSHEIRTPMNGVLGLAS 396

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
            +   +     +P        I  SG+ +  I+ND+LD+SK+ +GK+       S    V
Sbjct: 397 TLLETKL----DPEQRHAVMTIRESGDNLQRILNDILDLSKLNAGKLEFESVDFSPAALV 452

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QII 726
               +++ + A  K +L+       +P  +  D+  ++Q+ +N+ SNA+ FT  GG  I 
Sbjct: 453 EAVTAIIGVNAKTKSLLVNADIDPKLPPALKGDVARIRQVLINLASNAVKFTERGGLTIA 512

Query: 727 ISTTHTSNEEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
           ++     + +  +  RV DTG+G+    + K    F Q   S   R  GTGLGL +++ +
Sbjct: 513 VACRTRDDHKATIEWRVSDTGIGIPADRVGKLFTDFAQADASINRRFGGTGLGLAISRRI 572

Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPL 810
           ++   G   + S   +G+       L
Sbjct: 573 IEQMGGAIAVSSVQGEGSTFRFSLTL 598



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/380 (11%), Positives = 94/380 (24%), Gaps = 13/380 (3%)

Query: 82  TVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD---ILHIDPNNHIGDLLK 138
              + W  DA G L +  +           ++ G RL D  +              D + 
Sbjct: 252 AASWLWQTDAEGRLIDAPQRFADVAQLPLDQLKGERLVDTLEYLCPTDTATLATFADRMA 311

Query: 139 RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
           R+ +         + G        L A P      +F+G+RGFG                
Sbjct: 312 RRLSIPEILIHVVVAGGERRRW-ALTARPARDYEGKFAGYRGFG--RDVTERWRAEQAEA 368

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
               K   L  +      +      +    S     ++  +            D L+   
Sbjct: 369 ESRAKSEFLAMMS---HEIRTPMNGVLGLASTLLETKLDPEQRHAVMTIRESGDNLQRIL 425

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
             +L   + +  + E            +     +  N+K     ++    P L       
Sbjct: 426 NDILDLSKLNAGKLEFESVDFSPAALVEAVTAIIGVNAKTKSLLVNADIDPKLPPALKGD 485

Query: 319 ENLTPETVDKCPI-PFFVYSHGNLFYANPSFLLLTKYKSVD--DIEIAGGLSTLLDAPKL 375
                + +             G L  A           +++    +   G+         
Sbjct: 486 VARIRQVLINLASNAVKFTERGGLTIAVACRTRDDHKATIEWRVSDTGIGIPADRVGKLF 545

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG-IE 434
           +D       +  R   T +  +     I+         +        +F   +P +    
Sbjct: 546 TDFAQADASINRRFGGTGLGLAISRRIIEQMGGAIAVSSVQGEGSTFRFSLTLPWSDKQI 605

Query: 435 PEDVDTRINKRKMEIEVMQL 454
            +    R+    ++  +  L
Sbjct: 606 SDQRGDRVGAGDLKERIEAL 625


>gi|310829270|ref|YP_003961627.1| two-component system sensor histidine kinase [Eubacterium limosum
           KIST612]
 gi|308741004|gb|ADO38664.1| two-component system sensor histidine kinase [Eubacterium limosum
           KIST612]
          Length = 1091

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 108/535 (20%), Positives = 190/535 (35%), Gaps = 42/535 (7%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYSH---GNLFYANPSFLLLTKYKSVDDIEIAGG 365
              S       +   +  +  P     ++      +  AN     +  Y   +  +    
Sbjct: 288 QQASIENKRQADFLTQLYNTVPCGIIQFTTSPEHKIINANRRAWEIYGYSEAEYWQTVS- 346

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
               +   +   N   + +     +   +         +        ++       N   
Sbjct: 347 -DPFISMIEDERNKFRQIIDEISQNGGGV---FYEREGRRKNGEQCFVSVSMERLENSNG 402

Query: 426 ENMPQNGIEPEDVDTR----INKRKMEIEVMQLCSILEATSDGIAIINREGI-----ILS 476
           E +    +  +  +TR      +++  IE   L + +      I  IN         I  
Sbjct: 403 EEV-IQAVFNDITETRMLQMEREQEQLIENRSLRAAICTAYPLIMSINLSQNNYECFIQE 461

Query: 477 TN-------RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
            N            +    +  +       F  + +   +   +      +    +E   
Sbjct: 462 KNIVRYDEKGRYDDMVDITMGRVYPSYQEDFGHRFSREAL---MRRYEEGERELYMEMQM 518

Query: 530 LGSTKEEKLLSLRIIIK--KLPFSSCYSLTMHDISEWK----QEKNKLSHAKKIAEKESS 583
           LG   E   +SL +I               M  + E +    +++  L  A   AE  + 
Sbjct: 519 LGDDGEYHWISLYVIRVDNPYSDDMLVIGLMKVLDEQRAEKARQERLLRDALTSAEAANK 578

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
            KS+FL+R+SH+IRTP+ AIIG S +    +       R  +    ID S   +L ++ND
Sbjct: 579 AKSEFLSRMSHDIRTPMNAIIGMSTI---GQLKAGAPNRVRDCFEKIDSSSRYLLTLIND 635

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLR 702
           +LD+SKIESGK+ L        E ++E  +++     E+ I         + R    D  
Sbjct: 636 ILDMSKIESGKIVLAKRKFDFSEFINEINTIIYPQTRERGIDFVVHHHEPMERFYIGDEL 695

Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTT--HTSNE--EVILRVRDTGVGMTNYELEKAMK 758
            + QI +N+LSNA+ FT  GG+I +        N    + L V DTG+GM+   ++K  +
Sbjct: 696 RLNQIMMNLLSNAVKFTTPGGRITVDIRELKRENGLAYLGLSVSDTGIGMSEEFMKKIYQ 755

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
           PF Q          GTGLGL +   ++    G   + S    GT  E+  PL   
Sbjct: 756 PFEQENPGTARNKIGTGLGLSIVYNIIQLMGGTIAVTSEKNCGTTFELSVPLEPV 810



 Score = 45.4 bits (106), Expect = 0.044,   Method: Composition-based stats.
 Identities = 34/272 (12%), Positives = 87/272 (31%), Gaps = 36/272 (13%)

Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
                  + + E            +    + +       E  D       ++ +  Q+  
Sbjct: 108 RCTFVFKRMDGELKCMHIHNSIPFSAIEDDELFPVRAAKEAYDNLQEL--LQEKNQQIEL 165

Query: 457 ILEATSDGIAI--INREGIILSTNRAVSKLFGYPVEDILRKPFTVF-LEQNTPSVMNHYL 513
           ++     G+AI  ++    I   +  + +L+GY  E  + +      +            
Sbjct: 166 MMSQLPGGMAICHLDEGYSIKWVSDGLCQLYGYESEAQMVEAIGGETMAPVDADAYTRVY 225

Query: 514 TEILS-LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---YSLTMHDISEWKQEKN 569
            +I S +D  +T          +  ++ +  I K +            + DI+  K++  
Sbjct: 226 DDIKSCVDKNETYSVEYPIRRSDGSVIWVLDIGKGVIDRDGEKVIYCLVTDITHRKKQDM 285

Query: 570 KLSHAKKIAEKESSHKSDFLARVS-----------HEIRTPLTA------IIGFSEVIKN 612
            +  A    ++++   +     V            H+I   + A      I G+SE    
Sbjct: 286 LIQQASIENKRQADFLTQLYNTVPCGIIQFTTSPEHKI---INANRRAWEIYGYSEA--- 339

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
           + +  + +P    + + I+   N    I++++
Sbjct: 340 EYWQTVSDP----FISMIEDERNKFRQIIDEI 367


>gi|153007087|ref|YP_001381412.1| PAS/PAC sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. Fw109-5]
 gi|152030660|gb|ABS28428.1| PAS/PAC sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. Fw109-5]
          Length = 969

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 116/696 (16%), Positives = 237/696 (34%), Gaps = 43/696 (6%)

Query: 131 NHIGDLLKRQNTW-----YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVH 185
             I   L+R  +       G+T   P++G    V +            +         +H
Sbjct: 298 RRIARALQRLQSRVQALGRGETAGAPLQGPAEIVRL---GSAFDEMAGKLVAANASLELH 354

Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE 245
             R+          LD+            +       D+     P   +   +   ++  
Sbjct: 355 E-RLFETSPDPMVVLDRALRLRAVNPAYAAMRGLSTGDLLG--RPLVEVVGVDAFEAMAP 411

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
             A +    ++ +Y L T   +     E  +     +   +      ++ +       + 
Sbjct: 412 -RAERAFAGESVQYELWTDLPAGRRCLEAIYHPVRERERLEHVGVRFRDVTGRRHAEAAA 470

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIA 363
               S     +           + P    ++        ++N +FL              
Sbjct: 471 SQSLSF---AEAERRRFEAVFREAPAGIVIFDGRDLRAKWSNRTFLSFLDAPFAQL--GI 525

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
            GL      P   +   +  V    +           H            +         
Sbjct: 526 AGLRIDEFVPHAREAGLVDVVRRVGATGIPADTPEYRHEGFARGAAWWRWSVRAIPGEVG 585

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
                    +  E  +    ++  E E ++L +IL     G+ +   EG     N    +
Sbjct: 586 SD----VLLLVTEVTEQVEARKVAEDERLRLETILRTFPVGVILTGPEGRAGIVNDHARQ 641

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           ++G        +           +  +  L   L      T E I +    +    ++  
Sbjct: 642 IWGGDGALDAYRG-AWAATGIPLAPEDWALQRALRRGEVSTGELIDIER-FDGGRATILN 699

Query: 544 IIKKLPFS----SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
               +  +    +       D+++ ++        ++ AE    H+ + LA VSH++RTP
Sbjct: 700 NAAPIRDAFGRITGAVAAFQDVTDTRRA-------QREAEDAVHHRDEVLAIVSHDLRTP 752

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L+AII  + V+           R    A  I  SG  +  ++ DLLD++ +E G++++  
Sbjct: 753 LSAIIMGARVL--GGGAAEDPERVRATATRIASSGERMNRLIGDLLDLASLERGRLSMRR 810

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719
              +      EA  +++  A  K + +R   A+++P +  D   + Q+  N+ SNA+  T
Sbjct: 811 SAHAPSTLAREAADVIRPAAEAKGLDVRWRAADDLPLVPCDHDRILQVLGNLTSNAVKAT 870

Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
            SG  + I  +    ++V+  V+DTG G+ + EL      F +    +     GTGLGL 
Sbjct: 871 ASG-HVAIGASAR-GDQVLFEVQDTGPGIPSEELPHVFDRFRR---GRSAAYAGTGLGLA 925

Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
           +A+A+V+A+ G+ +  STP  GT++    P+ ++  
Sbjct: 926 IARALVEAHGGRIWAESTPGLGTVVRFSLPVVESPA 961


>gi|91781778|ref|YP_556984.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia xenovorans
            LB400]
 gi|91685732|gb|ABE28932.1| amino acid-binding domain sensor hybrid histidine kinase / PAS/PAC
            sensor hybrid histidine kinase [Burkholderia xenovorans
            LB400]
          Length = 1490

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 112/517 (21%), Positives = 196/517 (37%), Gaps = 22/517 (4%)

Query: 304  SHRNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEI 362
              R         +   N     +   P P   +   G     N ++           I  
Sbjct: 562  EVRLRKKTELELELQLNFQETMMKMVPYPLVAIDLDGRYIAVNEAYEQACGMSREAVI-- 619

Query: 363  AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
              G +T+        N+ I   M          A   L   +        + F      +
Sbjct: 620  --GRNTVDVQTWGEANSRILTDMTREMLNGRETAQLELQFERGAGNVRHGL-FWASVCRD 676

Query: 423  QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR--EGIIL--STN 478
               +     G   +  D R  + +      +L  +  +    +  + R  +G        
Sbjct: 677  GDGQPACVLGTVVDITDIRRAEMRARETERRLFDVTRSLPAVVFQLRRTSDGAYSFPYIG 736

Query: 479  RAVSKLFGYPVEDILRKPFTVF--LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
                 L G     + R     F  + +   + +   L      +    +E    G  +E 
Sbjct: 737  GDTRHLLGGKDGSLNRSDHVDFQRVCEEDRAFVLAELERSALCETPVNMEFRFEG-DEEI 795

Query: 537  KLLSLRIIIKKLPFSSC-YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
            K     ++ ++    S  +S    D S      ++L+ A+ +AE  +  K DF A +SHE
Sbjct: 796  KWARAELVPRREADDSVVWSGYWVDASVEHARSDELARARDLAEAAARAKDDFFAMMSHE 855

Query: 596  IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
            IRTP+  ++G  EV++        N    E    I  S   +L I++DLLD SKIE+G++
Sbjct: 856  IRTPMNGVLGLVEVLERTPL----NTDQGEMLGMIHESAGALLQILDDLLDYSKIEAGRL 911

Query: 656  NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSN 714
             +  E + + E V  A+ L+   A+EK + +R   A ++   +  D   ++QI  N+L N
Sbjct: 912  TIEAESIDIRELVDNAVGLLAGRAHEKGLKVRVDIAPDVAATLRGDSVRLRQILFNLLGN 971

Query: 715  AIHFTPSGGQ-IIISTTHTSNE--EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
            AI FTP G   + +S    ++    + + V DTG+G+      +  +PF Q  +S   R 
Sbjct: 972  AIKFTPQGEVDVRVSVFAQADGVQTLEMTVEDTGIGIAPEVQNRLFEPFVQAESSTTRRF 1031

Query: 772  EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
             GTGLGL + + ++D   G   + S P  GT + +  
Sbjct: 1032 GGTGLGLTICRKLIDLMGGSLALHSEPGSGTRMTVRL 1068



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 36/389 (9%), Positives = 94/389 (24%), Gaps = 36/389 (9%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN---NHIGDLLKRQNTWYG 145
           ID  G    ++E   +  G     +IG    DV      +     +   ++L  + T   
Sbjct: 594 IDLDGRYIAVNEAYEQACGMSREAVIGRNTVDVQTWGEANSRILTDMTREMLNGRETAQL 653

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +       G   +     +       + + +   G   V             +  +++  
Sbjct: 654 ELQFERGAGNVRHGLFWASVC--RDGDGQPACVLG--TVVDITDIRRAEMRARETERRLF 709

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD---------DVLKT 256
            +           +   D      P      ++ +          D         +    
Sbjct: 710 DVTRSLPAVVFQLRRTSDGAY-SFPYIGGDTRHLLGGKDGSLNRSDHVDFQRVCEEDRAF 768

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
               L  S     P   +F      +    +     +  + +S  +  +    S+     
Sbjct: 769 VLAELERSALCETPVNMEFRFEGDEEIKWARAELVPRREADDSVVWSGYWVDASVEHARS 828

Query: 317 EGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
           +      +  +                A   F  +  ++    +    GL  +L+   L+
Sbjct: 829 DELARARDLAEAAA------------RAKDDFFAMMSHEIRTPMNGVLGLVEVLERTPLN 876

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
            +      M++ S    +     L          L +     +        +        
Sbjct: 877 TDQGEMLGMIHESAGALLQILDDLLDYSKIEAGRLTIEAESIDIRELVDNAVGLLAGRAH 936

Query: 437 DVDTRIN-------KRKMEIEVMQLCSIL 458
           +   ++           +  + ++L  IL
Sbjct: 937 EKGLKVRVDIAPDVAATLRGDSVRLRQIL 965


>gi|228934915|ref|ZP_04097746.1| hypothetical protein bthur0009_33690 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228824815|gb|EEM70616.1| hypothetical protein bthur0009_33690 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
          Length = 510

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 98/528 (18%), Positives = 202/528 (38%), Gaps = 37/528 (7%)

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTK 353
           +S +   + S                +     +  P     +   G + + NPS   +  
Sbjct: 7   SSTQKKRHPSISRRLRNHIQDRSLTEMYASLFEHNPDSIISLNLEGVILHINPSAERILG 66

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
           Y S++ +E    +S L       + +  + V+    +         + +I       L +
Sbjct: 67  YTSLE-LEQKNIISIL-------EAHISEQVLQNIKNTETNNQQEYILSICHKNGFLLDV 118

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
                    Q         ++P +   RI +  ++    +L +++++    +   + EG 
Sbjct: 119 VTKLVPIFVQNRLTGVYAIMKPLEKSERI-ENMLKESEKRLRTLVDSMPAFVIFKDHEGR 177

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQ-NTPSVMNHYLTEILSLD--LRQTLEKITL 530
            L  N      F +       K  +  ++   +      +  E+  L    RQ L     
Sbjct: 178 WLEANDYALSCFNFHHVPYHGKKDSELIQYNESYREAFLHCEEVDELAWQQRQILHGEEF 237

Query: 531 GSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
              +++  L L +    L           +   D++E K+ +  L  ++K+A        
Sbjct: 238 IIHRDDSDLILSMSKVPLYHPDGSRKGLIVMGRDVTELKETEKLLRKSEKLAVV-----G 292

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
              A ++HEIR PLT++ GF  ++      P  N  +  Y + +    + +  I +  + 
Sbjct: 293 QLTAGIAHEIRNPLTSLKGFLTLLL-----PEINEEHKWYIDVMLSEISQMESITSQFMA 347

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706
           +SK +     L  +  ++   + E ++ +   A    + I     +    I  D   +KQ
Sbjct: 348 MSKPQ----VLSIKTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYAHDIQCDGNQLKQ 403

Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
           + +NIL NAI   P+GG I I T    +  +++R+ D G G+    + +  +PF      
Sbjct: 404 VFINILKNAIEAMPNGGNIFIQTKPLEDTFILIRIIDEGCGIPEDRISRLGEPFY----- 458

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
             ++ +GTGLGL +   +++ + GK +I S   KGT+++I  PL  + 
Sbjct: 459 -SLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTIVDIQLPLSSSH 505



 Score = 38.1 bits (87), Expect = 7.2,   Method: Composition-based stats.
 Identities = 15/149 (10%), Positives = 43/149 (28%), Gaps = 15/149 (10%)

Query: 64  NTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTI--------GNYAFKMIG 115
                +SE               +  D  G   E ++              G    ++I 
Sbjct: 148 ENMLKESEKRLRTLVDSMPAFVIFK-DHEGRWLEANDYALSCFNFHHVPYHGKKDSELI- 205

Query: 116 MRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREF 175
            +  +      +          +++   +G+  +   + ++L +   ++ +P+Y  +   
Sbjct: 206 -QYNESYREAFLHCEEVDELAWQQRQILHGEEFIIHRDDSDLILS--MSKVPLYHPDGSR 262

Query: 176 SGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            G    G         +   L ++ +K  
Sbjct: 263 KGLIVMG--RDVTELKETEKLLRKSEKLA 289


>gi|291085107|ref|ZP_06352077.2| sensor protein RcsC [Citrobacter youngae ATCC 29220]
 gi|291071984|gb|EFE10093.1| sensor protein RcsC [Citrobacter youngae ATCC 29220]
          Length = 928

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 99/427 (23%), Positives = 174/427 (40%), Gaps = 35/427 (8%)

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
           +     L  ++      + +  I           M     E        +  +   E  Q
Sbjct: 283 VPVDLVLERVRM-----MILNAILLNVLVGAALFMLTRMYERRIFIPAESDAQRLEEHEQ 337

Query: 454 L-CSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
               I+ +   GI I+   +GI + +N            +  ++                
Sbjct: 338 FNRKIVASAPVGICILRTLDGINILSNELAHTYLNMLTHEDRQR---------------- 381

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571
            LT+I+       ++      T     L +  +  +    +     + D+S   + +  L
Sbjct: 382 -LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSARVKMEESL 436

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
               + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R       ++
Sbjct: 437 QEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPNGVDR---LVTAMN 492

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
            S +L+L I++D+LD SKIES ++ +     S  E +S   +        K++ +     
Sbjct: 493 NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMSHITANYLPLVVRKQLGLYCFID 552

Query: 692 NNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
            ++P  +  D   ++Q+  N+LSNAI FT +G  I++       + + +RVRDTGVG+  
Sbjct: 553 PDVPVALNGDPMRLQQVISNLLSNAIKFTDTG-CIVLHVQC-DGDYLSIRVRDTGVGIPA 610

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+   +  PL
Sbjct: 611 KEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTLRIPL 670

Query: 811 YDTSHPH 817
           Y   +P 
Sbjct: 671 YGAQYPQ 677


>gi|114777319|ref|ZP_01452330.1| multi-sensor hybrid histidine kinase [Mariprofundus ferrooxydans
           PV-1]
 gi|114552464|gb|EAU54947.1| multi-sensor hybrid histidine kinase [Mariprofundus ferrooxydans
           PV-1]
          Length = 888

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 87/524 (16%), Positives = 181/524 (34%), Gaps = 50/524 (9%)

Query: 318 GENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
              L     D  P   F     G     N +F  L   +S  DI     +          
Sbjct: 263 SRALLKGLRDGIPDLIFYKDMQGVYLGCNQAFCELIGRESESDIIGKTDVDLFNKQQAQF 322

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
             +  + ++   + R           + +   +   +  +     +     +   GI  +
Sbjct: 323 FRDVDQQILQAGAARRNDEW------VSYPDGSRRLLDTLKTPFMDSKGGVIGVIGISRD 376

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             D  + + K+     +L   LE   + + I +R+G I   N A +++ GY  ++IL K 
Sbjct: 377 ITDNWLAEGKLR----KLSQALEQAGEAVMITDRDGGIEYINPAFTRVTGYRADEILGKS 432

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--- 553
             +       +     +  +L+   +   +   +   K+       + I  +        
Sbjct: 433 LRMLKSDRQNAAFYKGMWRMLARGDQW--QGKLVNRKKDGSFYPALLTISPMFDEQGAIS 490

Query: 554 -YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
            Y     D+SE++Q + +   ++K+           +  ++H+    L  I G    +  
Sbjct: 491 NYIGIQQDLSEYEQLEAQFHQSQKM-----EAVGTLVGGIAHDFNNTLAGITGNL-YLAK 544

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
           +    L +   ++  N I+        ++  LL  S+    K  +   P+S+   + E I
Sbjct: 545 KAADSLPD--VVDRLNSIEELAFRAAGMIQQLLTFSR----KGTVQMHPISMPSFLKEVI 598

Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ--IIIST- 729
            L ++   E  I +     +    +  D+  ++Q  +N+++NA     S G   I +   
Sbjct: 599 KLQEVSVPE-NISLTCQVGDVDLIVNGDINLLQQALINLINNARDAVESVGTPAITVKLD 657

Query: 730 -------------THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
                          TS +   + + D G GM+    +   +PF          G+GTGL
Sbjct: 658 QCSVDEEFLERYPAITSRDVACITISDNGEGMSPEIQKHMFEPFFTTKG----VGKGTGL 713

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820
           GL +    + ++ G   + S    GT++ I  PL  +      +
Sbjct: 714 GLAMVYGAIQSHGGAIAVESEEGVGTIVRIYLPLLQSGAAEGVV 757



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 20/109 (18%), Positives = 40/109 (36%), Gaps = 5/109 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKRQNTWYGKT 147
            D  G ++ I+    +  G  A +++G  L  + SD  +      +  +L R + W GK 
Sbjct: 404 TDRDGGIEYINPAFTRVTGYRADEILGKSLRMLKSDRQNAAFYKGMWRMLARGDQWQGKL 463

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRAL 196
                +G+     + ++  P++      S +   GI           A 
Sbjct: 464 VNRKKDGSFYPALLTIS--PMFDEQGAISNY--IGIQQDLSEYEQLEAQ 508



 Score = 68.5 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 43/143 (30%), Gaps = 3/143 (2%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE-DILRKPFTVFLEQ 503
           + +      L  + +   D I   + +G+ L  N+A  +L G   E DI+ K       +
Sbjct: 258 QSLGTSRALLKGLRDGIPDLIFYKDMQGVYLGCNQAFCELIGRESESDIIGKTDVDLFNK 317

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDI 561
                      +IL     +  ++         +LL                      DI
Sbjct: 318 QQAQFFRDVDQQILQAGAARRNDEWVSYPDGSRRLLDTLKTPFMDSKGGVIGVIGISRDI 377

Query: 562 SEWKQEKNKLSHAKKIAEKESSH 584
           ++    + KL    +  E+    
Sbjct: 378 TDNWLAEGKLRKLSQALEQAGEA 400



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/281 (8%), Positives = 73/281 (25%), Gaps = 16/281 (5%)

Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNK 239
           IV V+    DP             L +        +  +                  ++ 
Sbjct: 248 IVRVS--LQDPYQSLGTSRALLKGLRDGIPDLIFYKDMQGVYLGCNQAFCELIGRESESD 305

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTS--EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297
           +   T+         +  +          ++    E     + ++           ++  
Sbjct: 306 IIGKTDVDLFNKQQAQFFRDVDQQILQAGAARRNDEWVSYPDGSRRLLDTLKTPFMDSKG 365

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKS 356
                +      + +   +       + +++      +    G + Y NP+F  +T Y++
Sbjct: 366 GVIGVIGISRDITDNWLAEGKLRKLSQALEQAGEAVMITDRDGGIEYINPAFTRVTGYRA 425

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
            + +     L  L    + +        ML R D+            +    +       
Sbjct: 426 DEILGK--SLRMLKSDRQNAAFYKGMWRMLARGDQWQGKLVN-----RKKDGSFYPALLT 478

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
                ++        GI+ +  +    + +   +  ++ ++
Sbjct: 479 ISPMFDEQGAISNYIGIQQDLSEYEQLEAQF-HQSQKMEAV 518



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/276 (9%), Positives = 64/276 (23%), Gaps = 21/276 (7%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAF-KMIGMRLCDVS----DILHIDPNNHIGDLLKR 139
             +  D  G     ++   + IG  +   +IG    D+          D +  I   L+ 
Sbjct: 277 LIFYKDMQGVYLGCNQAFCELIGRESESDIIGKTDVDLFNKQQAQFFRDVDQQI---LQA 333

Query: 140 QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199
                    +   +G+     +D    P         G    GI      +       ++
Sbjct: 334 GAARRNDEWVSYPDGS--RRLLDTLKTPFMDSKGGVIGV--IGISRDITDNWLAEGKLRK 389

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
           L +      E      +      +  +           +++   +      D        
Sbjct: 390 LSQALEQAGEAV--MITDRDGGIEYINPAFTRVTGYRADEILGKSLRMLKSDRQNAAFYK 447

Query: 260 PLLT--SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
            +    +       +      + + Y        + +       Y+  +   S     + 
Sbjct: 448 GMWRMLARGDQWQGKLVNRKKDGSFYPALLTISPMFDEQGAISNYIGIQQDLSEYEQLEA 507

Query: 318 GENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTK 353
             + + +              G     N +   +T 
Sbjct: 508 QFHQSQKM-----EAVGTLVGGIAHDFNNTLAGITG 538


>gi|312172971|emb|CBX81226.1| Two component sensor kinase/response regulator protein RcsC
           [Erwinia amylovora ATCC BAA-2158]
          Length = 987

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 96/378 (25%), Positives = 172/378 (45%), Gaps = 29/378 (7%)

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKP 496
           +    N  ++E +      I+ +   GI I+   +G  + +N                  
Sbjct: 376 LPAEENAYRLEEQEQFNRKIVASAPVGICILRTSDGTNILSNELA-------------HN 422

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556
           +   L Q         LTE++       ++      T     L +  +  +    +    
Sbjct: 423 YLTLLTQEDRL----RLTEMICGQQVNFVD----VLTGSNTNLQISFVHSRYRNENVAIC 474

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            + D+S   + +  L    + AE+ S  KS FLA VSHE+RTPL  IIG  +++K +   
Sbjct: 475 VLVDVSARVKMEQSLHEIAQEAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLKTKALP 534

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
              +         ++ S +L+L I++D+LD SKIES ++ +     S  E ++   +   
Sbjct: 535 AGADS----LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEQREFSPREVIAHITANYL 590

Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
             A +KR+ +     +++P +L  D   ++Q+  N+L+NAI FT +GG  II   +   +
Sbjct: 591 AMAVKKRLTLWCFIDSDVPVLLEGDPMRLQQVISNLLNNAIKFTHTGG--IILQAYVKGD 648

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            +  RVRD+GVG+   E+ +   PF Q+ +  Q   +GTGLGL + + +++   G   + 
Sbjct: 649 YLAFRVRDSGVGIPAKEITRLFDPFFQVGSGVQRHFQGTGLGLAICEKLMNMMDGDIEVE 708

Query: 796 STPAKGTLIEIIFPLYDT 813
           S P  G+   I  PLY++
Sbjct: 709 SEPGMGSQFIIRIPLYNS 726


>gi|12516556|gb|AAG57353.1|AE005454_1 sensor for ctr capsule biosynthesis, probable histidine kinase
           acting on RcsB [Escherichia coli O157:H7 str. EDL933]
 gi|13362576|dbj|BAB36530.1| sensor for ctr capsule biosynthesis [Escherichia coli O157:H7 str.
           Sakai]
 gi|209765620|gb|ACI81122.1| sensor for ctr capsule biosynthesis [Escherichia coli]
 gi|209765622|gb|ACI81123.1| sensor for ctr capsule biosynthesis [Escherichia coli]
 gi|209765624|gb|ACI81124.1| sensor for ctr capsule biosynthesis [Escherichia coli]
 gi|209765626|gb|ACI81125.1| sensor for ctr capsule biosynthesis [Escherichia coli]
          Length = 933

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 99/495 (20%), Positives = 186/495 (37%), Gaps = 41/495 (8%)

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
             P+   +             + LT  +S    +                    + ++L 
Sbjct: 223 TLPMGVTILDENGHT-----LISLTGPESKIKADPRWMQERSWFGY----TEGFRELVLK 273

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV---DTRINK 444
           ++      +      +    E    +              +       E         + 
Sbjct: 274 KNLPPSSLSIVYSVPVDKVLERIRMLILNAILLNVLAGAALFTLARMYERRIFIPAESDA 333

Query: 445 RKMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            ++E        I+ +   GI I+   +G+ + +N            +  ++        
Sbjct: 334 LRLEEHEQFNRKIVASAPVGICILRTADGVNILSNELAHTYLNMLTHEDRQR-------- 385

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                    LT+I+       ++      T     L +  +  +    +     + D+S 
Sbjct: 386 ---------LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSS 432

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + +  L    + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R 
Sbjct: 433 RVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR- 490

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
                 ++ S +L+L I++D+LD SKIES ++ +     S  E ++   +        K+
Sbjct: 491 --LVTAMNNSSSLLLKIISDILDFSKIESEQLMIEPREFSPREVMNHITANYLPLVVRKQ 548

Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           + +      ++P  +  D   ++Q+  N+LSNAI FT +G  I++       + + +RVR
Sbjct: 549 LGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG-CIVLHVR-ADGDYLSIRVR 606

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTGVG+   E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+
Sbjct: 607 DTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGS 666

Query: 803 LIEIIFPLYDTSHPH 817
              +  PLY   +P 
Sbjct: 667 QFTVRIPLYGAQYPQ 681


>gi|218782281|ref|YP_002433599.1| multi-sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218763665|gb|ACL06131.1| multi-sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 1152

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 90/414 (21%), Positives = 181/414 (43%), Gaps = 39/414 (9%)

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             D      K +    +  +I +   D     + +G IL  + ++S++  Y   DIL + 
Sbjct: 343 RKDLEAELAKRKEAEEKYRTIFDNIQDVYFETSLDGAILEISPSISRVSEYGRTDILGRA 402

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--- 553
              F  + +   M  +L  I++    +  +       +        +  + +   +    
Sbjct: 403 VGDF--RMSKEAMADFLRRIITQG--EVRDFEVRLQNRNGAFKDFSLNSRLVLKENGAPD 458

Query: 554 -YSLTMHDISEWKQEKNKLSHAKKIAEKESS---------------------HKSDFLAR 591
                M D++E +Q + +L  AK+  E+ ++                      KS FLA 
Sbjct: 459 KIVGVMRDVTERRQAQQELLAAKERLEEANAQLEASIKQAEQLANEAFVANNAKSQFLAN 518

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           +SHEIRTP+  IIG + ++ +       + +   +   + +S + ++ I+ND+LD SK+E
Sbjct: 519 MSHEIRTPMNGIIGMAALLLDTPL----DGQQTVFVQTVRKSAHALVTIINDILDFSKVE 574

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALN 710
           +GK+ L   P SL   +     ++ + A+EK +        ++P  ++ D   ++Q+ +N
Sbjct: 575 AGKLELEEAPFSLQAELEAMGDVLAVKAHEKGLEYACIMHPDVPDALIGDSIRLRQVLVN 634

Query: 711 ILSNAIHFTPSGGQ-IIISTTHTSNEE--VILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
           I+ NA+ FT +G   + IS     +    ++  ++DTG G+   ++E   + F Q  +S 
Sbjct: 635 IVGNAVKFTDAGEVSLEISMAAMDDARCTLLFSIKDTGAGLPEDKIETVFEAFAQADSSV 694

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII--FPLYDTSHPHDC 819
             +  GTGLGL +++++V    G+    +  A+G        F L +    H+ 
Sbjct: 695 TRKFGGTGLGLAISQSLVRLMGGEIIAENREARGAHFRFTASFALQEQGAEHES 748



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 39/294 (13%), Positives = 79/294 (26%), Gaps = 43/294 (14%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
            +  A   E E       D     +F  S  G +   +PS   +++Y   D +  A G  
Sbjct: 347 EAELAKRKEAEEKYRTIFDNIQDVYFETSLDGAILEISPSISRVSEYGRTDILGRAVG-- 404

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
                 ++S       +    +         RL             +        +    
Sbjct: 405 ----DFRMSKEAMADFLRRIITQGEVRDFEVRLQN---RNGAFKDFSLNSRLVLKENGAP 457

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLC---SILEATSDGIAIINREGIILSTNRAVSKL 484
               G+  +  + R  ++++     +L    + LEA+     I   E      N A    
Sbjct: 458 DKIVGVMRDVTERRQAQQELLAAKERLEEANAQLEAS-----IKQAE---QLANEAFVAN 509

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
                + +      +    N    M   L +      +    +                 
Sbjct: 510 -NAKSQFLANMSHEIRTPMNGIIGMAALLLDTPLDGQQTVFVQTVR-------------- 554

Query: 545 IKKLPFSSCYSLTMHDISEWKQEKN---KLSHAKKIAEKESSHKSDFLARVSHE 595
                 +      ++DI ++ + +    +L  A    + E     D LA  +HE
Sbjct: 555 ----KSAHALVTIINDILDFSKVEAGKLELEEAPFSLQAELEAMGDVLAVKAHE 604



 Score = 41.9 bits (97), Expect = 0.48,   Method: Composition-based stats.
 Identities = 15/240 (6%), Positives = 48/240 (20%), Gaps = 13/240 (5%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK 146
           +     G + EIS  + +        ++G  + D         +      +  Q      
Sbjct: 372 FETSLDGAILEISPSISRVSEYGRTDILGRAVGDFRMSKEAMAD--FLRRIITQGEVRDF 429

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                           L +  +   N      +  G++         +       ++   
Sbjct: 430 EVRLQNRNGAFK-DFSLNSRLVLKENGAPD--KIVGVMRDVTERRQAQQELLAAKERLEE 486

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
            +   +      ++                K++  +   +              LL    
Sbjct: 487 ANAQLEASIKQAEQLA-----NEAFVANNAKSQFLANMSHEIRTPMNGIIGMAALLLDTP 541

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
               +     T+   + +       + +    S                        + +
Sbjct: 542 LDGQQTVFVQTV---RKSAHALVTIINDILDFSKVEAGKLELEEAPFSLQAELEAMGDVL 598


>gi|114704750|ref|ZP_01437658.1| putative sensor histidine kinase protein [Fulvimarina pelagi
           HTCC2506]
 gi|114539535|gb|EAU42655.1| putative sensor histidine kinase protein [Fulvimarina pelagi
           HTCC2506]
          Length = 822

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 125/767 (16%), Positives = 257/767 (33%), Gaps = 70/767 (9%)

Query: 103 PKTIGNYAFK-----MIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNL 157
            + +           ++G     +      +     G+L K   +           G   
Sbjct: 49  AELVDRSQEANEFRALLGASDQRLLVYRDSEIPRVFGELPKEAGSPRSPQRFLEFSG--- 105

Query: 158 YVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSV 217
           ++PI++A     +     +    F I    R +      G+              G  + 
Sbjct: 106 WLPIEVAGDLAAAIENLRNNAVSFAISLDTRSNELIEVTGRTHGGLALVRFTHTAGLRAK 165

Query: 218 EKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD-VLKTEKYPLLTSEESSLPEQE--- 273
            K      ++             ++    +    +  L         + +   P++    
Sbjct: 166 LKRAGSELTEALGTIDTMQALLDTAPLPAWLRDREGKLYWVNQAFSKAVDGGSPDETVEN 225

Query: 274 --DFHTINLNQYTKKQY----------------------FGTLQNNSKESFEYLSHRNHP 309
             +F   N  +                               L      +   +      
Sbjct: 226 GTEFLAENDRREVASAVSQYGLYAGKLSTVVDADRHIFDVTELAGQLGTAGLAIDVSETE 285

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLST 368
           ++     +  +   ET+DK       +     L Y N +F  L +      ++       
Sbjct: 286 NIRRELRQTIDSQSETLDKLGTAVARFDPETRLVYYNAAFKNLFELTDT-FLQSDPDHVA 344

Query: 369 LLDAPKLSDNNAIKPVM--LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
            LD  + +     +       R +     ++       W+  +   +  +          
Sbjct: 345 FLDHLRHAGVLPTETAFPSQRRKEDLAAYSATDPTETMWHLSSGRTLRVVATPHPQG--- 401

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
                 +  +  +    + +++         L+   +G+A+   +G +  +N    ++F 
Sbjct: 402 --GATFVFEDITERLKLEMEIKTVARLQRETLDYLGEGVAVFGGDGRLQLSNPIFGEMFE 459

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNH------------YLTEILSLDLRQTLEKITLGSTK 534
           +    +  KP     E      +               L   +  + R +       S  
Sbjct: 460 FDAAFLKSKPRIQTFEDTAGVRIEDGTFDGTGWKGLSVLVTSIDENGRNSENGEVRLSNG 519

Query: 535 EEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
               ++L      LP +    LT  D+S+ +  +  L       E+ +  K DF++ +S+
Sbjct: 520 ----MTLAYKAVPLPAAQ-TMLTFSDVSDARAAERMLREKNDALEEANRIKYDFVSFMSY 574

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           E+R+PLT +IGFS+++     G L N R  +Y ++I  S   +L +VND LD++ I++G 
Sbjct: 575 ELRSPLTTVIGFSQLLAEPELGTL-NERQSDYLDHITSSTRSLLAMVNDTLDLATIDAGI 633

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714
           M L    V +   V  A+  VQ   +E ++ +      +   + AD   + QI  N+LSN
Sbjct: 634 MELEVSHVDIAARVENAVEGVQERLHENQLRVEVDLTKSGDVLEADGARLTQILYNLLSN 693

Query: 715 AIHFTPSGGQIIISTTHTSNE-EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
           A +F P G +I +    +    EV   V D G G+   ++++  + F    N++  R  G
Sbjct: 694 ATNFAPQGSEIELKAWKSETGSEVCFAVTDRGPGIPADQVDRIFERFET--NAEGGRSSG 751

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY----DTSHP 816
            GLGL + K++V+ + G+  + +    GT +    P      D  HP
Sbjct: 752 PGLGLSIVKSLVELHGGEIRVETPNGGGTRVICALPASQDRPDPEHP 798



 Score = 45.8 bits (107), Expect = 0.030,   Method: Composition-based stats.
 Identities = 48/392 (12%), Positives = 113/392 (28%), Gaps = 33/392 (8%)

Query: 77  DPIPRTVRFTWNIDAHGYLKEISEELPKTI-GNYAFKMIGMRLCDVSDILHIDPNNHIGD 135
           D  P      W  D  G L  +++   K + G    + +     +            +  
Sbjct: 188 DTAPLPA---WLRDREGKLYWVNQAFSKAVDGGSPDETV-ENGTEFLAEND---RREVAS 240

Query: 136 LLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA 195
            + +   + GK +       +++   +LA            G  G  I  V+  +N  R 
Sbjct: 241 AVSQYGLYAGKLSTVVDADRHIFDVTELAGQ---------LGTAGLAI-DVSETENIRRE 290

Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS-SLTEYYAHKDDVL 254
           L + +D +   L ++    +  + E   ++   +      + +    S  ++ A  D + 
Sbjct: 291 LRQTIDSQSETLDKLGTAVARFDPETRLVYYNAAFKNLFELTDTFLQSDPDHVAFLDHLR 350

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS---------KESFEYLSH 305
                P  T+  S   +++       +      +  + +              +F +   
Sbjct: 351 HAGVLPTETAFPSQRRKEDLAAYSATDPTETMWHLSSGRTLRVVATPHPQGGATFVFEDI 410

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIAG 364
                L         L  ET+D       V+   G L  +NP F  + ++     ++   
Sbjct: 411 TERLKLEMEIKTVARLQRETLDYLGEGVAVFGGDGRLQLSNPIFGEMFEF-DAAFLKSKP 469

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
            + T  D   +                  +  ++     + +    + ++          
Sbjct: 470 RIQTFEDTAGVR--IEDGTFDGTGWKGLSVLVTSIDENGRNSENGEVRLSNGMTLAYKAV 527

Query: 425 PENMPQNG-IEPEDVDTRINKRKMEIEVMQLC 455
           P    Q      +  D R  +R +  +   L 
Sbjct: 528 PLPAAQTMLTFSDVSDARAAERMLREKNDALE 559


>gi|76817983|ref|YP_336784.1| two-component system sensor protein [Burkholderia pseudomallei
           1710b]
 gi|76582456|gb|ABA51930.1| two-component system sensor protein [Burkholderia pseudomallei
           1710b]
          Length = 988

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 126/677 (18%), Positives = 232/677 (34%), Gaps = 59/677 (8%)

Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH 233
           +F   +G+ ++H  +      A+G     +          + ++ + +  +   QSP P 
Sbjct: 85  QFDAHQGYAVLHTPQGAPAALAVGIPAPGRS---ASAFAPYLALLETQLLMGDGQSPLPD 141

Query: 234 LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293
            R++    S    Y       + +         S+                 +     + 
Sbjct: 142 DRVEGYSFSPDGTYLSLLWSREDQAPEAFIESHSASGL---IGDAMRGIRYLRDASTIVP 198

Query: 294 NNSKESFEYLSHRNHP--------SLSAYFDEGENLTPETVDKCPIPFF----------- 334
             +     +L     P         +    D    L    V   P+  F           
Sbjct: 199 LRADRRTVWLPPHPDPLTGKPMIRIVQPAIDATGKLFAIYVRSLPLDMFYSNLNDAPAGS 258

Query: 335 ----VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390
               V   GN+   + +        +   + I       L           +  M   SD
Sbjct: 259 TLTIVDRKGNVILGSSNQHGGDGGATASALGI-----RSLGDGFGGLVERYQDGMFVTSD 313

Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR------INK 444
           +        +H   W    + A+              +    +     D +         
Sbjct: 314 QLPGTDWVLVHAYSWK-TIAAALALRFSLVTGLVAGIIVMLWLFAIQFDRKGLIPNYRRA 372

Query: 445 RKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
           +++    +   +IL     G+ +++  +G +L  N A+ +L     ++ L          
Sbjct: 373 QRLLESEVLNRTILRTAPVGLGLLSAQDGSVLLQNNAMLELSARTSDEPLPIRLWEAYRH 432

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                 +               +            L   ++  +   ++    T+ DIS 
Sbjct: 433 AVGRSSDE-------DGALLQHDLAIEREGANPVYLQANVVAARYRGANVLLCTLLDISL 485

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            K+ + KL  A+  A++ +  KS FLA +SHEIRTPL AIIG  E+++        + + 
Sbjct: 486 RKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPL----SEQQ 541

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            E  + ++   N +L I+ND+LD+SK+ESG+M L   P  +   + E +      A  K 
Sbjct: 542 SERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAYAPLAESKG 601

Query: 684 ILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIST----THTSNEEVI 738
           + + +S    + R    D   ++Q+  N++ NAI FT  G  I I             + 
Sbjct: 602 LALLSSIGEGVARHYTGDPTRIRQVLSNLIGNAIKFTERG-HISIDVHRAKAARDGSAIE 660

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           + V DTG+G+    +      + Q   S   R  G+GLGLPL + +V    G   I S P
Sbjct: 661 IWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLP 720

Query: 799 AKGTLIEIIFPLYDTSH 815
             GT + +  PL +  H
Sbjct: 721 DFGTTVTVALPLREARH 737


>gi|219853029|ref|YP_002467461.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanosphaerula palustris E1-9c]
 gi|219547288|gb|ACL17738.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanosphaerula palustris E1-9c]
          Length = 575

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 81/517 (15%), Positives = 180/517 (34%), Gaps = 27/517 (5%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
                  +   +   +  D  P+    +   G +   N     LT    +     A  + 
Sbjct: 65  AQTREEAETLRDQYIDLYDFAPVGYVTLDPAGIIQEVN-----LTGSLLLSMNRGAL-IG 118

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
               A    D+         R  RT I  +  L       +           K      +
Sbjct: 119 ARFGAFLHLDSRLPFTAFCERVRRTGITETCDLKMQGPAGDRVWYAHLDGRVKQAGPNSD 178

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
                   +  + R          ++   + E    G+   N +G I+S N A  ++ G 
Sbjct: 179 GRIRLAFSDVTENRRANEAAAESELRFRRLFETMLQGVVYQNADGRIISMNPAAERILGK 238

Query: 488 PVEDILRKPFTVFLEQNTPS-------VMNHYLTEILSLDLRQTLEKITLGSTKEE-KLL 539
              + + +                   + +  +  + + +  + +        ++  + +
Sbjct: 239 SPAEFINQTSEDTEHHTIREDGTKFLGLEHPAMVALRTGEDIKDVVMGVFNPREQGYRWI 298

Query: 540 SLRIIIKKLPFSSC---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
           S+  +    P             DI+E ++ +  L    +  +  +     F    SH++
Sbjct: 299 SIDAVPLFHPSEKRPYQVYTIFDDITERRKAEEVLREYGEKVQASNEELQQFAYVTSHDL 358

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           + PL  I+ FS+++  +  G L +    EY  +I   G  +  ++ DLL  S++++    
Sbjct: 359 QEPLRNIVSFSQLLNRRYQGRL-DADADEYLGFIIEGGQRMQLLIKDLLQFSQVQTTARP 417

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716
           L  E V +   V++ + +++    E    +      ++P I+AD   ++Q+  N++ NA+
Sbjct: 418 L--EQVDMHGVVADVLRMMERQIREANATVTM---GDLPAIMADASQLEQVFTNLIGNAL 472

Query: 717 HFTPSGGQIIISTTHTS-NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
            +        I  +     +     V D G+G+     ++    F ++        EGTG
Sbjct: 473 KYRRHDLPPAIQISAERMRKCWRFAVADNGIGIAPEFFDRIFVVFQRLH--TIEEFEGTG 530

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
           +GL + K +V+ + G+  + S P +G+      P  +
Sbjct: 531 IGLAIVKKIVERHGGRVSVTSVPGEGSTFFFTLPAVE 567



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/179 (12%), Positives = 54/179 (30%), Gaps = 3/179 (1%)

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471
           A+       A      + Q  +E ++ +    + + E    Q   + +    G   ++  
Sbjct: 36  AVLSHEKAIALVHELQVHQIELEMQNEELAQTREEAETLRDQYIDLYDFAPVGYVTLDPA 95

Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
           GII   N   S L       ++   F  FL  ++      +   +    + +T +    G
Sbjct: 96  GIIQEVNLTGSLLLSMNRGALIGARFGAFLHLDSRLPFTAFCERVRRTGITETCDLKMQG 155

Query: 532 STKEEKLLSL---RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
              +    +    R+            L   D++E ++     + ++    +       
Sbjct: 156 PAGDRVWYAHLDGRVKQAGPNSDGRIRLAFSDVTENRRANEAAAESELRFRRLFETMLQ 214



 Score = 47.7 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 35/396 (8%), Positives = 97/396 (24%), Gaps = 29/396 (7%)

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK---VSSLT 244
                 R   + L  ++  L++              I         L   N+   + +  
Sbjct: 62  EELAQTREEAETLRDQYIDLYDFAPVGYVTLDPAGIIQEVNLTGSLLLSMNRGALIGARF 121

Query: 245 EYYAHKDDVLKTEKY-PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL-----QNNSKE 298
             + H D  L    +   +     +            ++       G +      ++ + 
Sbjct: 122 GAFLHLDSRLPFTAFCERVRRTGITETCDLKMQGPAGDRVWYAHLDGRVKQAGPNSDGRI 181

Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSV 357
              +     +   +    E E       +         +  G +   NP+   +      
Sbjct: 182 RLAFSDVTENRRANEAAAESELRFRRLFETMLQGVVYQNADGRIISMNPAAERILGKSPA 241

Query: 358 DDIEI--AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI-AASARLHTIQWNRENSLAMT 414
           + I           +            P M+       I      +   +      +++ 
Sbjct: 242 EFINQTSEDTEHHTIREDGTKFLGLEHPAMVALRTGEDIKDVVMGVFNPREQGYRWISID 301

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG-- 472
            +P               I  +  + R  +  +     ++ +  E       + + +   
Sbjct: 302 AVPLFHP-SEKRPYQVYTIFDDITERRKAEEVLREYGEKVQASNEELQQFAYVTSHDLQE 360

Query: 473 ---IILST----NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
               I+S     NR          ++ L               M   + ++L     QT 
Sbjct: 361 PLRNIVSFSQLLNRRYQGRLDADADEYLG------FIIEGGQRMQLLIKDLLQFSQVQTT 414

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDI 561
            +          +  +  ++++    +  ++TM D+
Sbjct: 415 ARPLEQVDMHGVVADVLRMMERQIREANATVTMGDL 450



 Score = 47.3 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 30/304 (9%), Positives = 85/304 (27%), Gaps = 14/304 (4%)

Query: 14  LTSNCKGNTQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENT 73
           +T  C    Q  +  ++       + K+  P  D   +  F+D  +   +N    +SE  
Sbjct: 145 ITETCDLKMQGPAGDRVWYAHLDGRVKQAGPNSDGRIRLAFSDVTENRRANEAAAESELR 204

Query: 74  FVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI 133
           F            +  +A G +  ++    + +G    + I     D       +     
Sbjct: 205 FRRLFETMLQGVVYQ-NADGRIISMNPAAERILGKSPAEFINQTSEDTEHHTIREDGTKF 263

Query: 134 -------GDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHV 186
                     L+                   Y  I + A+P++  + +   ++ + I   
Sbjct: 264 LGLEHPAMVALRTGEDIKDVVMGVFNPREQGYRWISIDAVPLFHPSEKRP-YQVYTIFDD 322

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY 246
                    + +   +K    +E  +  + V          Q P  ++   +++ +    
Sbjct: 323 ITERRKAEEVLREYGEKVQASNEELQQFAYVTSHD-----LQEPLRNIVSFSQLLNRRYQ 377

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
                D  +   + +   +   L  ++      +    +      +     +    +  +
Sbjct: 378 GRLDADADEYLGFIIEGGQRMQLLIKDLLQFSQVQTTARPLEQVDMHGVVADVLRMMERQ 437

Query: 307 NHPS 310
              +
Sbjct: 438 IREA 441


>gi|170767641|ref|ZP_02902094.1| sensor histidine kinase/response regulator RcsC [Escherichia
           albertii TW07627]
 gi|170123975|gb|EDS92906.1| sensor histidine kinase/response regulator RcsC [Escherichia
           albertii TW07627]
          Length = 933

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 99/493 (20%), Positives = 187/493 (37%), Gaps = 41/493 (8%)

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
             P+   +             + LT  +S  + E                    + ++L 
Sbjct: 223 TLPMGVTILDENGHT-----LISLTGAESKIEAEPRWMQERSWFGYTPG----FRELVLK 273

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV---DTRINK 444
           ++      +      +    E    +              +       E         + 
Sbjct: 274 KNLPPSSLSIVYSVPVDQVLERIRMLILNAILLNVIAGAALFTLARMYERRIFIPAESDA 333

Query: 445 RKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
           +++E        I+ +   GI I+   +G+ + +N            +  ++        
Sbjct: 334 QRLEEHEQFNRKIVASAPVGICILRTVDGVNILSNELAHTYLNMLTHEDRQR-------- 385

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                    LT+I+       ++      T     L +  +  +    +     + D+S 
Sbjct: 386 ---------LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSS 432

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + +  L    + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R 
Sbjct: 433 RVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR- 490

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
                 ++ S +L+L I++D+LD SKIES ++ +     S  E ++   +        K+
Sbjct: 491 --LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQ 548

Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           + +      ++P  +  D   ++Q+  N+LSNAI FT +G  I++       + + +RVR
Sbjct: 549 LGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG-CIVLHVRVE-GDYLSIRVR 606

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTGVG+   E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+
Sbjct: 607 DTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGS 666

Query: 803 LIEIIFPLYDTSH 815
              +  PLY   +
Sbjct: 667 QFTVRIPLYGAQY 679


>gi|258624915|ref|ZP_05719842.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           mimicus VM603]
 gi|258582771|gb|EEW07593.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           mimicus VM603]
          Length = 1171

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 86/369 (23%), Positives = 155/369 (42%), Gaps = 17/369 (4%)

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG--YPVEDILRKPFTVFLEQNTP 506
            ++  L  +L+A    I I + EG ++ TN A     G  +  + +   P   FL+    
Sbjct: 516 EQIQWLTELLDAIPSMIYISDDEGDVVLTNAAYRDAMGACHANDCLNNLPDCSFLQLPDS 575

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQ 566
           S   + +   +        E       +         I   +     Y    +DI+E K+
Sbjct: 576 STTEYSVVIQIPARSCAIGEHYYHVIRRG--------IAHPINRRQYYLTLFNDITELKE 627

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
            ++ L  +   A +    ++ FLA VSHE+RTP+ A++G  E++ ++    + +      
Sbjct: 628 TESALRQSTAQALQAVEARNHFLAVVSHELRTPIAAMLGLMEILASR----IKSNESQLL 683

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
                 S   +   VND+LD SKIE+ ++ L      L + +   +   +  A+ + +  
Sbjct: 684 LTNAITSAERLKMHVNDILDFSKIEAQQLQLDVATYHLADELCPLLRSFEATADLQGLDF 743

Query: 687 RTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
              +  +    +  D   + QI  N+LSNA+ FT  G  I I    +        V DTG
Sbjct: 744 IVYWQPDARLLVQVDALRLNQIITNLLSNALKFTEKGS-IRICVEQSEQ-HFTFEVTDTG 801

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
            GMT  ++    +PF Q  +S   R  GTGLG+ +   +V+   G  ++ S   +GT + 
Sbjct: 802 CGMTEPQIASIFQPFVQADSSITRRFGGTGLGMSIVANLVELMGGHIHVESEIDQGTTVR 861

Query: 806 IIFPLYDTS 814
           +  P+   +
Sbjct: 862 VSLPVVGEA 870


>gi|172036053|ref|YP_001802554.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
           51142]
 gi|171697507|gb|ACB50488.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
           51142]
          Length = 1084

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 113/587 (19%), Positives = 206/587 (35%), Gaps = 80/587 (13%)

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKS 356
                 S            E E      V+        +   G + + N ++        
Sbjct: 285 RVLILRSMSRLQQTQMALKESEAQYRAIVEDQTELICRFLPDGTITFVNEAYCRYFGKTQ 344

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
            D +         L   +           L   +          H I   +  +    +I
Sbjct: 345 ADIL---NTTFFSLTPQEYQGFLWDNLSCLSIQN----PVITHQHPIINGQGETRWQYWI 397

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV------------------------- 451
                ++    +   G+  +  + R  ++++   +                         
Sbjct: 398 NRGLFDEDGNIIEIQGVGRDITEQRRIEQELARNLQQSQTLNDITQQIHQSLDLEIILNH 457

Query: 452 --MQLCSILEATSDGIAIINRE--GIIL----------STNRAVSKLF---------GYP 488
              +   ILE+    I   N +  G  +            N  V K++         G  
Sbjct: 458 TTEETRRILESDRVAIYQFNADWSGEFIAESVDNQWVKLVNSQVKKVWEDTYLQQTKGGR 517

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLD---LRQTLEKITLGSTK----EEKLLSL 541
            +                      L +  +     +   +     G              
Sbjct: 518 YQYNQSFMVDDIYTVGHQQCHLDLLEQFQAKAYMIVPIFVHHQLWGLLACYQNSHPRHWQ 577

Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
              I+ L   +         SE  +    L  AK  AE  +  KSDFLA +SHE+RTPL 
Sbjct: 578 SSEIQLLNQIAHQLGLAIQQSELLKA---LETAKNTAESANRAKSDFLAHMSHELRTPLN 634

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           AI+GFS+++ N       +    EY + I++SG  +L ++  +LD++KIE+G++NL ++P
Sbjct: 635 AILGFSQLLNNDEN---LDEEQKEYIDIINQSGEHLLTLIKSVLDMAKIEAGEINLDYQP 691

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTP 720
           ++L + V     + +L A  K I +     N++P  I+ D   ++Q+ +N+L+NAI FT 
Sbjct: 692 LNLHQLVKNLSGMFKLKAQCKNIDLTVDIGNDVPSLIMGDEGKLRQVLINLLNNAIKFTE 751

Query: 721 SGGQIIISTTHTSNEE--------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
            G ++I+S   +  ++        +   + DTG G+   E  +  +PF Q    Q+ + E
Sbjct: 752 EG-KVILSIKKSQQQQEKSSQIIPLRFEIEDTGPGIDIEEAPRLFQPFFQTKLGQKTQ-E 809

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819
           GTGLGL ++   V    G   +      GT+     P+    +  DC
Sbjct: 810 GTGLGLTISYEFVHLMGGTLQVSCPIKGGTIFYFTLPVNIPKNYSDC 856



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 52/436 (11%), Positives = 120/436 (27%), Gaps = 52/436 (11%)

Query: 164 AALPIY-------SRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSS 216
           A +P Y              GF    ++       + +   +  +     L  ++KG   
Sbjct: 39  AGVPRYFPPTYSVDSQGNPQGF-AIDVIEAVAKRANLQVKYEIKENWSETLQALEKGEVD 97

Query: 217 VEKEKYDIFSQQSPPPHLRMKNK------VSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270
           +        ++     +            V    +     DD+  +    +  +E  +L 
Sbjct: 98  LVPNMGVTTTRSEIFRYTDPIETINICLFVLRDNQKIKTLDDLSGSTIAVIERNEAINLL 157

Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330
           +Q     +   +  +   F  L  +            H + +   D         + + P
Sbjct: 158 KQYHNVKLESLESPEHALFHLLSGDVDGLAYPEPPIKHLAQTISVDYRLKTIKPALKEVP 217

Query: 331 IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390
               V+ H       P  L                L   L++ +         +     +
Sbjct: 218 RAIAVHRHH------PQLLQRLDVA----------LDHFLNSSEY------TQIYRRWYE 255

Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450
            T +     +          L +  I           + +  I       +  +  ++  
Sbjct: 256 PTPV---ITVSPWMLTGSGVLVLLMI-------LMVIIWRVLILRSMSRLQQTQMALKES 305

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
             Q  +I+E  ++ I     +G I   N A  + FG    DIL   F     Q     + 
Sbjct: 306 EAQYRAIVEDQTELICRFLPDGTITFVNEAYCRYFGKTQADILNTTFFSLTPQEYQGFLW 365

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQ 566
             L+ +   +   T +   +    + +      I + L               DI+E ++
Sbjct: 366 DNLSCLSIQNPVITHQHPIIN--GQGETRWQYWINRGLFDEDGNIIEIQGVGRDITEQRR 423

Query: 567 EKNKLSHAKKIAEKES 582
            + +L+   + ++  +
Sbjct: 424 IEQELARNLQQSQTLN 439



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/171 (10%), Positives = 44/171 (25%), Gaps = 11/171 (6%)

Query: 73  TFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH 132
             V D      RF       G +  ++E   +  G     ++      ++   +      
Sbjct: 311 AIVEDQTELICRFL----PDGTITFVNEAYCRYFGKTQADILNTTFFSLTPQEY---QGF 363

Query: 133 IGDLLKRQNTWYGKTTLWP--IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVD 190
           + D L   +      T     I G             ++  +      +G G        
Sbjct: 364 LWDNLSCLSIQNPVITHQHPIINGQGETRWQYWINRGLFDEDGNIIEIQGVG--RDITEQ 421

Query: 191 NDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS 241
                   R  ++   L++I +        +  +         +   ++V+
Sbjct: 422 RRIEQELARNLQQSQTLNDITQQIHQSLDLEIILNHTTEETRRILESDRVA 472


>gi|254299737|ref|ZP_04967186.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 406e]
 gi|157809305|gb|EDO86475.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 406e]
          Length = 1035

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 126/677 (18%), Positives = 232/677 (34%), Gaps = 59/677 (8%)

Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH 233
           +F   +G+ ++H  +      A+G     +          + ++ + +  +   QSP P 
Sbjct: 132 QFDAHQGYAVLHTPQGAPAALAVGIPAPGRS---ASAFAPYLALLETQLLMGDGQSPLPD 188

Query: 234 LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293
            R++    S    Y       + +         S+                 +     + 
Sbjct: 189 DRVEGYSFSPDGTYLSLLWSREDQAPEAFIESHSASGL---IGDAMRGIRYLRDASTIVP 245

Query: 294 NNSKESFEYLSHRNHP--------SLSAYFDEGENLTPETVDKCPIPFF----------- 334
             +     +L     P         +    D    L    V   P+  F           
Sbjct: 246 LRADRRTVWLPPHPDPLTGKPMIRIVQPAIDATGKLFAIYVRSLPLDMFYSNLNDAPAGS 305

Query: 335 ----VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390
               V   GN+   + +        +   + I       L           +  M   SD
Sbjct: 306 TLTIVDRKGNVILGSSNQHGGDGGATASALGI-----RSLGDGFGGLVERYQDGMFVTSD 360

Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR------INK 444
           +        +H   W    + A+              +    +     D +         
Sbjct: 361 QLPGTDWVLVHAYSWK-TIAAALALRFSLVTGLVAGIIVMLWLFAIQFDRKGLIPNYRRA 419

Query: 445 RKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
           +++    +   +IL     G+ +++  +G +L  N A+ +L     ++ L          
Sbjct: 420 QRLLESEVLNRTILRTAPVGLGLLSAQDGSVLLQNNAMLELSARTSDEPLPIRLWEAYRH 479

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                 +               +            L   ++  +   ++    T+ DIS 
Sbjct: 480 AVGRSSDE-------DGALLQHDLAIEREGANPVYLQANVVAARYRGANVLLCTLLDISL 532

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            K+ + KL  A+  A++ +  KS FLA +SHEIRTPL AIIG  E+++        + + 
Sbjct: 533 RKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPL----SEQQ 588

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            E  + ++   N +L I+ND+LD+SK+ESG+M L   P  +   + E +      A  K 
Sbjct: 589 SERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAYAPLAESKG 648

Query: 684 ILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIST----THTSNEEVI 738
           + + +S    + R    D   ++Q+  N++ NAI FT  G  I I             + 
Sbjct: 649 LALLSSIGEGVARHYTGDPTRIRQVLSNLIGNAIKFTERG-HISIDVHRAKAARDGSAIE 707

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           + V DTG+G+    +      + Q   S   R  G+GLGLPL + +V    G   I S P
Sbjct: 708 IWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLP 767

Query: 799 AKGTLIEIIFPLYDTSH 815
             GT + +  PL +  H
Sbjct: 768 DFGTTVTVALPLREARH 784


>gi|90578600|ref|ZP_01234410.1| hypothetical protein VAS14_02823 [Vibrio angustum S14]
 gi|90439433|gb|EAS64614.1| hypothetical protein VAS14_02823 [Vibrio angustum S14]
          Length = 700

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 87/377 (23%), Positives = 156/377 (41%), Gaps = 16/377 (4%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
               +++     +     +   D    I+ +      +             I    F  F
Sbjct: 190 AARTQQLTFSQQRFKDFAKTAGDWFWEIDVDYNFTYISEP-----QVANTQISCDNFIEF 244

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTM 558
              N   +  + LT  LS  +     +  L     E+  S         +     +  T 
Sbjct: 245 F--NNYPLFQNKLTSKLSQQVVFEDLEWNLSVDNTEQWYSFSGTPYFDKYGKLQGFRGTA 302

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            +I+  K+    L  A+K AE  +  KS F+A +SHEIRTPL A++G  E +        
Sbjct: 303 KNITSRKKRLFDLQEAQKQAETANKAKSQFIAMMSHEIRTPLNAVLGLMESLSLSGL--- 359

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
            N +   + + +D+S +L+L I+ND+LD+S+IESG   L    +++ E++      +   
Sbjct: 360 -NNKQNLWLSQMDQSAHLLLAIINDILDLSRIESGSFRLFNSDINVVESIRLVADQLAPQ 418

Query: 679 ANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737
           A +  +  +    + IP +I  D   + Q+  N++ NA+ FT  G   ++      N  +
Sbjct: 419 AAKNNVQFQCEIDDAIPKQIYGDKNRIAQVLFNLIGNAVKFTSIGSVRVVVRKVDDN--I 476

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
            + V DTG+G+          PF Q   S   R  GTGLGL +++ +++   G   + S 
Sbjct: 477 EIAVIDTGIGIAKDAQANIFNPFHQADGSITRRYGGTGLGLAISQHLIEKMNGTISLESE 536

Query: 798 PAKGTLIEIIFPLYDTS 814
              G+  ++  P+   S
Sbjct: 537 LGTGSCFKVSIPIVYPS 553


>gi|332712207|ref|ZP_08432135.1| PAS/PAC sensor hybrid histidine kinase [Lyngbya majuscula 3L]
 gi|332349013|gb|EGJ28625.1| PAS/PAC sensor hybrid histidine kinase [Lyngbya majuscula 3L]
          Length = 520

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 77/382 (20%), Positives = 160/382 (41%), Gaps = 15/382 (3%)

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
           +     ++ ++    QL SIL +  D +     +G I   N     L G+   ++  +  
Sbjct: 119 LQQYQMEQSLQNSQAQLASILNSIDDAVIATTTQGTITFMNAPAEALTGWKASEVWGRDV 178

Query: 498 TVFLEQNTP---SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--- 551
           T           +++ + L +++       L +      K+   + +      L      
Sbjct: 179 TSVFPIVNDLTGNLVKYPLDKVIKTGQVVYLGEHNALIAKDGGRIPVGNSASPLKDQLGN 238

Query: 552 -SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
            +   L   DISE  Q +  L       ++    +S F++ V HE R PL+ I+  +E +
Sbjct: 239 VNGVVLAFWDISEEPQTE-MLEQVLAKEQEIQDFRSQFVSTVCHEFRNPLSVILTAAE-L 296

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
             +        +   Y   I  S   + +++ ++L I + E G++     P++L++   +
Sbjct: 297 LKRYGNLATQEQKQRYLKRITISVERMTELMEEVLLIGQAEVGRLEFIPTPMNLEQFCQD 356

Query: 671 AISLV-QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
            I+ +    A+  RI+  +        +  D + +  I  N+L+NA+ ++PS   +  + 
Sbjct: 357 LIAELCLDQASRNRIVFTSD--GVYTEVCMDDKLIHYIITNLLTNALKYSPSHEIVTFNL 414

Query: 730 THTSNEE-VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
           T    ++ V+ R++D G+G+   + +K  + F +  N      +GTGLGL + K  V+ +
Sbjct: 415 TCDLKQQLVVFRIQDKGIGIAEADQKKIFESFYRAKNVGT--IQGTGLGLSIVKRCVEQH 472

Query: 789 MGKFYIFSTPAKGTLIEIIFPL 810
            G+  + S    GT   I  P+
Sbjct: 473 QGEIELTSEVGVGTTFTIKIPI 494



 Score = 41.2 bits (95), Expect = 0.80,   Method: Composition-based stats.
 Identities = 16/114 (14%), Positives = 35/114 (30%), Gaps = 6/114 (5%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG----DLLKRQNTWYGKT 147
            G +  ++       G  A ++ G  +  V  I++    N +      ++K     Y   
Sbjct: 152 QGTITFMNAPAEALTGWKASEVWGRDVTSVFPIVNDLTGNLVKYPLDKVIKTGQVVYLGE 211

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
               I      +P+  +A P+  +    +G            +     L + L 
Sbjct: 212 HNALIAKDGGRIPVGNSASPLKDQLGNVNGV--VLAFWDISEEPQTEMLEQVLA 263


>gi|220908923|ref|YP_002484234.1| Cache sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219865534|gb|ACL45873.1| Cache sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 970

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 84/250 (33%), Positives = 132/250 (52%), Gaps = 5/250 (2%)

Query: 563 EWKQEKN--KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           E K  +   +L HA++ AE  +  KS FLA +SHE+RTP+ AIIG+SE++  +    L  
Sbjct: 454 EQKVAQRTAELEHARQAAEAANQAKSTFLANMSHELRTPMNAIIGYSEMLIEEAAD-LEP 512

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
             ++     I  +G  +L ++ND+LD+SKIE+G+M+L+ E  SL   +   I+ +Q    
Sbjct: 513 EEFVPDLQKIQAAGKHLLSLINDILDLSKIEAGRMDLYLETFSLQSLLDGVIATIQPLLE 572

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
           +    +      ++  + ADL  V+Q   N+LSNA  FT  G  I ++ T   +  +  +
Sbjct: 573 KNSNTLEVKAPTDLGSMHADLTKVRQSLFNLLSNACKFTDRG-TITLTVTRQDDA-INFK 630

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V DTG+GMT  ++ +  +PF Q   S   +  GTGLGL +         G   + STP  
Sbjct: 631 VSDTGIGMTPDQMARLFQPFTQADASTTRKYGGTGLGLTITNRFCQMMGGNITLESTPGV 690

Query: 801 GTLIEIIFPL 810
           GT   +  PL
Sbjct: 691 GTTFTVSLPL 700


>gi|162450130|ref|YP_001612497.1| protein kinase [Sorangium cellulosum 'So ce 56']
 gi|161160712|emb|CAN92017.1| Protein kinase [Sorangium cellulosum 'So ce 56']
          Length = 1850

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 97/631 (15%), Positives = 213/631 (33%), Gaps = 25/631 (3%)

Query: 193  PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD 252
              ALG  L               +   + +  + +      +R                 
Sbjct: 1220 DEALGNELAGLCFRALGKTTIAGAYLTKAHRAYGRWGATEAMRRIEHAYPDLVPGESLRG 1279

Query: 253  VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
                +    L         Q     I L++         ++N        L  R+   + 
Sbjct: 1280 ERSPQAGAALDVGSVLKASQAISGEIVLDRLLDALMRIMVENAGARRGVLLLLRDGRLVV 1339

Query: 313  AYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                   + +   +   P+        ++               +  I+   G      A
Sbjct: 1340 EAEHHIRDASVHVLGAAPLEGREDLPASVVTYVARTRETVLLDDL-AIDGPFGRDP-CCA 1397

Query: 373  PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
                 ++   P++        I     L    +  +    +  +  + AN          
Sbjct: 1398 GGAPRSSLAAPLVYKGRLAGVIYLENDLTRSAFTPDRVEVIRLLSAQAANSIENARLYTD 1457

Query: 433  IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
            ++ E+ + R  +  +     +L + LE+T+DGI +++ E  ++  NR  + ++  P E +
Sbjct: 1458 LQQENAERRRAEEVLRHSYSRLEATLESTADGILVVDDEQHVVRQNRRFAAMWRIPDEIL 1517

Query: 493  LRKPFTVFLEQN-----TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
                   F          P      +  + +     + + I      + ++       ++
Sbjct: 1518 STGSDDTFRTFASDQVLDPEAFLQRIRALYASPEESSFDAIPF---ADGRVFERYSQPQR 1574

Query: 548  LPFSS-CYSLTMHDISEWKQEKNKLSH-------AKKIAEKESSHKSDFLARVSHEIRTP 599
            L         +  D++   + + +          A+  AE+    + +FL+  SHE+RTP
Sbjct: 1575 LGGRVVGRVWSFRDVTARVRAEQQRDQLLLDERRARTAAEEAVHLRDEFLSIASHELRTP 1634

Query: 600  LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
            LT++    + +  +    +   R         R    + D+V+ LLD S+I++G++ L+ 
Sbjct: 1635 LTSLQLAIQSLGQRLARGMDVERVRSAVALSGRQVKRLTDLVDMLLDASRIQAGRLELYT 1694

Query: 660  EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719
             PV L   V E ++ +     +    +       +     D   ++Q+  N+L+NAI F 
Sbjct: 1695 APVELRALVDEVVAHLGDQIAQSGSAVAVRAEQPVIG-RWDPHRLEQVVTNLLTNAIKFG 1753

Query: 720  PSGGQIIISTTHTSNEEV-ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
                   I    T  + +  L V D G+G+      +  + F +  +S+     G GLGL
Sbjct: 1754 ERQP---IDIAITRGDRIARLSVTDRGIGIPAEVQAQLFERFRRGVSSKN--YGGLGLGL 1808

Query: 779  PLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             + + +V+A+ G+  + S   +G+   +  P
Sbjct: 1809 YITRTIVEAHGGRIRVSSEVGRGSTFCVELP 1839


>gi|319953461|ref|YP_004164728.1| pas/pac sensor signal transduction histidine kinase [Cellulophaga
            algicola DSM 14237]
 gi|319422121|gb|ADV49230.1| PAS/PAC sensor signal transduction histidine kinase [Cellulophaga
            algicola DSM 14237]
          Length = 1153

 Score =  302 bits (774), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 103/753 (13%), Positives = 228/753 (30%), Gaps = 47/753 (6%)

Query: 87   WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP----NNHIGDLLKRQNT 142
            W  D        S+++   +G     ++      +  +L  +          + +     
Sbjct: 412  WEFDLIKGTSYWSDKVYDILGLGKDSIL-ESFESLKTLLFEEDIPLLEGKRKNSIATGEE 470

Query: 143  WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
            +  +  +   +G+   + I      I         + G   +             +    
Sbjct: 471  YILENRVKKPDGSI--IWIRQKGHYIKDTLGTPIFYEG--TIQDITATKLISLSLEDTLN 526

Query: 203  KFSHLHEIKKGHSSVEKEKYDIFSQQS------PPPHLRMKNKVSSLTEYYAHKDDVLKT 256
            ++  + E                            P +       +  E   H DD  + 
Sbjct: 527  RYHLVTEATSDAIWDLDFVKGEIYLGENYKKMFGYPTIGNSKDDLAFWESKIHPDDRKRV 586

Query: 257  EKYPLLTSEESSLPEQED--FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
             +    + +  ++  QED  F   N            +++    +   +      + S  
Sbjct: 587  VQSFDSSVKLGAINWQEDYKFLNSNKEYSDVSDKAFIVRDEKGMALRMVGAMQDVTDSKK 646

Query: 315  FDEGENLTPETVDKCPIP--FFVYSHGNL---FYANPSFLLLTKYKSVDDIEIAGGLSTL 369
                   T +  D         ++    +    +   ++  L  Y S D I  +      
Sbjct: 647  AKLDLEDTIQRYDLVTKATSDAIWDLDFVTGEIFRGENYKKLFGYSSFDMINNSLDYWKS 706

Query: 370  LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
               P+      ++   L                        L++    F   N     + 
Sbjct: 707  KIHPEDH-KRVLESFNLCIESGDDNWYEEY--RFGNKDNKYLSIIDKAFIVRNSSGNALR 763

Query: 430  QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
              G   +  +       ++    +   + EAT+DGI   + +  ++       +LFGY  
Sbjct: 764  MVGAIQDVTEKLQAIEDIKRANERFEKVAEATNDGIWDWDLKNNVVFHGAGYFELFGYSK 823

Query: 490  EDILRKP--FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
             +    P  +   +       +   +T ++ L  ++                 +      
Sbjct: 824  SEENSNPEIWIGRIHPEDKPKILELITGLIELKTQEYFNCEYRYLKSNGDYAFVIDRGSV 883

Query: 548  LPFSSC----YSLTMHDISEWKQEKNKLSHAKK-------IAEKESSHKSDFLARVSHEI 596
            +             + DI++ K  +  L               + +     F   VSH++
Sbjct: 884  MKNDRGEVIRIVGAVQDITDQKDYEASLQKLNNHLENQAVELLRYNEELEQFAYVVSHDL 943

Query: 597  RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
            + PL  I  F  ++  +++  +      +Y ++       +  I+ DLLD S++  GK  
Sbjct: 944  QEPLRMISSFL-ILLEKKYNHVIEEEGQKYIHFAVDGAKRMRQIILDLLDFSRV--GKSE 1000

Query: 657  LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716
                PV L+  + E   + Q    EK   I       +P I +    V+Q+  N++ NA+
Sbjct: 1001 EELIPVDLNVLLEEVSQIFQQETLEKEATIII---PTLPTINSYSLLVQQLFQNLIGNAL 1057

Query: 717  HFTPSGGQIIISTTHTS-NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
             +   G + ++  T+          V D G+G+ +   +K    F ++    + +  GTG
Sbjct: 1058 KYQKEGAKPVVEVTYEELASHHKFSVSDNGIGIDSEYFDKIFVIFQRLHG--RNQYNGTG 1115

Query: 776  LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            +GL L K +++   GK ++ S    GT      
Sbjct: 1116 IGLALVKKIIENLKGKIWLESEKGTGTTFYFTI 1148


>gi|319793673|ref|YP_004155313.1| pas/pac sensor hybrid histidine kinase [Variovorax paradoxus EPS]
 gi|315596136|gb|ADU37202.1| PAS/PAC sensor hybrid histidine kinase [Variovorax paradoxus EPS]
          Length = 647

 Score =  302 bits (774), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 92/492 (18%), Positives = 175/492 (35%), Gaps = 40/492 (8%)

Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
           FF+   G +   N     L  Y+  + I      S       L  N     + +      
Sbjct: 44  FFLDPTGIVLSWNAGARQLQGYEPHEVIGR--HFSVFYPPELLEKNWPQHELEVATRTGQ 101

Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
                     ++ +     + + +     +   +    + I  +    +     +     
Sbjct: 102 ---YEEEGWRLRKDGTRFWS-SLVLTRLTSPDGKLRGFSKITRDLSARQKQDELLRASEE 157

Query: 453 QLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
           +   I++   D  I +++  G I+S N       GY   +I+ K F+VF      +    
Sbjct: 158 RFRLIVDGVKDYAIFMLDPSGYIVSWNTGAKATKGYEAHEIIGKHFSVFYPPEVAATGFP 217

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQE 567
              E+ +       E       ++       +II  L         ++    D++E ++ 
Sbjct: 218 D-EELKTAREVGRFEDEGWRVRRDGSRFWASVIITALFDETGRHRGFAKVTRDLTERRRI 276

Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
                  ++I        + FLA + HE+R PLT I     ++ ++             +
Sbjct: 277 STLEDEGRRI--------TTFLAMLGHELRNPLTPISNAVAIM-DRLGSAADTATLARMS 327

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
           + I R    +  +V+DLLD+ +I SGK++L  +PV L + + E+I +++  A+ K+  + 
Sbjct: 328 SIIGRQLKQITRLVDDLLDVGRITSGKIHLESKPVRLCDVIDESIEMLRPSADAKQHALV 387

Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747
               +  P I  D   + Q+  N+L+NAI FTP GG+I +           + V D G G
Sbjct: 388 FHSPSADPWITGDRARMIQVVCNLLNNAIKFTPDGGRIEVRLR-EVGANAEVSVSDNGPG 446

Query: 748 MTNYELEKAMKPFGQIPNSQQI--------RGEGTGLGLPLAKAMVDANMGKFYIFS--T 797
           + +  L +    F Q                           + +V  + G    FS  T
Sbjct: 447 IPSAALPRVFMLFAQGEQEISRPQGGLGLGLTL--------VQQLVTLHGGDVSAFSKGT 498

Query: 798 PAKGTLIEIIFP 809
           P  G    +  P
Sbjct: 499 PGDGAEFVVRLP 510



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/246 (10%), Positives = 67/246 (27%), Gaps = 8/246 (3%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + +D  G +   +    +  G    ++IG           ++ N    +L     T   
Sbjct: 43  IFFLDPTGIVLSWNAGARQLQGYEPHEVIGRHFSVFYPPELLEKNWPQHELEVATRTGQY 102

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +   W +          L    + S + +  GF    I            L +  +++F 
Sbjct: 103 EEEGWRLRKDGTRFWSSLVLTRLTSPDGKLRGFSK--ITRDLSARQKQDELLRASEERFR 160

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLR---MKNKVSSLTEYYAHKDDVLKTE--KYP 260
            + +  K ++    +        +           +++        +  +V  T      
Sbjct: 161 LIVDGVKDYAIFMLDPSGYIVSWNTGAKATKGYEAHEIIGKHFSVFYPPEVAATGFPDEE 220

Query: 261 LLTSEESSLPEQEDFH-TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
           L T+ E    E E +    + +++        L + +     +       +        E
Sbjct: 221 LKTAREVGRFEDEGWRVRRDGSRFWASVIITALFDETGRHRGFAKVTRDLTERRRISTLE 280

Query: 320 NLTPET 325
           +     
Sbjct: 281 DEGRRI 286



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 50/131 (38%), Gaps = 6/131 (4%)

Query: 452 MQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
                +++A +D  I  ++  GI+LS N    +L GY   +++ + F+VF          
Sbjct: 29  ADYRLMVDAITDYAIFFLDPTGIVLSWNAGARQLQGYEPHEVIGRHFSVFYPPELLEKNW 88

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQ 566
               E+         E+      K+       +++ +L         +S    D+S  ++
Sbjct: 89  PQ-HELEVATRTGQYEEEGWRLRKDGTRFWSSLVLTRLTSPDGKLRGFSKITRDLSARQK 147

Query: 567 EKNKLSHAKKI 577
           +   L  +++ 
Sbjct: 148 QDELLRASEER 158



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/208 (11%), Positives = 48/208 (23%), Gaps = 9/208 (4%)

Query: 54  FTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM 113
             D +     +     SE  F            + +D  GY+   +     T G  A ++
Sbjct: 139 TRDLSARQKQDELLRASEERFRLIVDGVKDYAIFMLDPSGYIVSWNTGAKATKGYEAHEI 198

Query: 114 IGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNR 173
           IG                   +L   +     +   W +          +    ++    
Sbjct: 199 IGKHFSVFYPPEVAATGFPDEELKTAREVGRFEDEGWRVRRDGSRFWASVIITALFDETG 258

Query: 174 EFSGFRGFGIVHVNRVDND----PRALGKRLDKKFSHLHEIKKGHSSVEKEKY---DIFS 226
              GF    +                  +         HE++   + +         + S
Sbjct: 259 RHRGFAK--VTRDLTERRRISTLEDEGRRITTFLAMLGHELRNPLTPISNAVAIMDRLGS 316

Query: 227 QQSPPPHLRMKNKVSSLTEYYAHKDDVL 254
                   RM + +    +      D L
Sbjct: 317 AADTATLARMSSIIGRQLKQITRLVDDL 344


>gi|209765618|gb|ACI81121.1| sensor for ctr capsule biosynthesis [Escherichia coli]
          Length = 933

 Score =  302 bits (774), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 99/495 (20%), Positives = 186/495 (37%), Gaps = 41/495 (8%)

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
             P+   +             + LT  +S    +                    + ++L 
Sbjct: 223 TLPMGVTILDENGHT-----LISLTGPESKIKADPRWMQERSWFGY----TEGFRELVLK 273

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV---DTRINK 444
           ++      +      +    E    +              +       E         + 
Sbjct: 274 KNLPPSSLSIVYSVPVDKVLERIRMLILNAILLNVLAGAALFTLARMYERRIFIPAESDA 333

Query: 445 RKMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            ++E        I+ +   GI I+   +G+ + +N            +  ++        
Sbjct: 334 LRLEEHEQFNRKIVASAPVGICILRTADGVNILSNELAHTYLNMLTHEDRQR-------- 385

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                    LT+I+       ++      T     L +  +  +    +     + D+S 
Sbjct: 386 ---------LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSS 432

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + +  L    + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R 
Sbjct: 433 RVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR- 490

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
                 ++ S +L+L I++D+LD SKIES ++ +     S  E ++   +        K+
Sbjct: 491 --LVTAMNNSSSLLLKIISDILDFSKIESEQLMIEPREFSPREVMNHITANYLPLVVRKQ 548

Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           + +      ++P  +  D   ++Q+  N+LSNAI FT +G  I++       + + +RVR
Sbjct: 549 LGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG-CIVLHVR-ADGDYLSIRVR 606

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTGVG+   E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+
Sbjct: 607 DTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGS 666

Query: 803 LIEIIFPLYDTSHPH 817
              +  PLY   +P 
Sbjct: 667 QFTVRIPLYGAQYPQ 681


>gi|313496503|gb|ADR57869.1| KinB [Pseudomonas putida BIRD-1]
          Length = 588

 Score =  302 bits (774), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 107/552 (19%), Positives = 202/552 (36%), Gaps = 36/552 (6%)

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
           T+ ES    QE F  +      +          S     +L      +  A     +   
Sbjct: 69  TAPESLRLLQESFQDLLNQGLEQGGERTGFSKASSNYQAFLQTYRDSAAPARSMGVDQPL 128

Query: 323 PETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
               ++            L     S            + ++G L   L    +     I 
Sbjct: 129 GAAFNQVRTDLIDSHKHALDLITRSEER----TRDRALLVSGVLG--LMGLVVLVLGFIT 182

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
              + R     I A A+        +  + +   P  +A +  +   + G+  + +    
Sbjct: 183 AHNIARRFGQPIEALAKAADQLGKGDFDVTL---PVAQAAELNQLTRRFGLMADALRKHQ 239

Query: 443 NK--RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
                ++     +L ++L++  DG+ II+R+G +   N    +  G+    +        
Sbjct: 240 ATNVDELLAGQQRLQAVLDSIDDGLLIIDRQGRLEHLNPVAQRQLGWNDSRVGSSLVEAL 299

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTM 558
                   +   L           L        +E +LL+  +     P        + +
Sbjct: 300 QRPELEQQLRQVLRGGSLDRPPDDLNMEV---DEESRLLTYSLTPVSHPQGPILGAVMVL 356

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
           HD++E +  +                +S+F+ R SHE+RTP+T  +  +  +  +R    
Sbjct: 357 HDVTEQRAFE--------------RVRSEFVLRASHELRTPVTG-MHMAFGLLRERVKFP 401

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
              R  +    I      +  ++NDLL+ S+ +SG   L   P ++D+ +  A       
Sbjct: 402 PEARENDLLETIGEEMQRLTQLINDLLNFSRYQSGLQKLELAPCAIDDLLEHAQLRFAEQ 461

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738
           A  K+I +       +PRI AD+  + ++  N+L NAI  T +GG+I +       E VI
Sbjct: 462 AAHKQIELIKELDPPLPRIQADVAQLDRVLDNLLHNAIRHTANGGRIRLH-ARRHAERVI 520

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           + V D G G++  +  +  +PF Q+      +  G GLGL L K +V  + G+  +FS P
Sbjct: 521 ISVEDNGEGISYGQQARIFEPFVQV----GRKKGGAGLGLALCKEIVQLHGGRMGVFSRP 576

Query: 799 AKGTLIEIIFPL 810
            +GT   +  P+
Sbjct: 577 GQGTQFYMALPV 588



 Score = 41.2 bits (95), Expect = 0.86,   Method: Composition-based stats.
 Identities = 22/241 (9%), Positives = 64/241 (26%), Gaps = 9/241 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G L+ ++    + +G    ++ G  L +      ++        + R  +      
Sbjct: 267 IDRQGRLEHLNPVAQRQLGWNDSRV-GSSLVEALQRPELEQQ---LRQVLRGGSLDRPPD 322

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
              +E       +  +  P+        G     ++H          +  R +      H
Sbjct: 323 DLNMEVDEESRLLTYSLTPVSHPQGPILGA--VMVLHDVTEQRAFERV--RSEFVLRASH 378

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           E+ +   +     + +  ++   P    +N +         +   L  +       +   
Sbjct: 379 EL-RTPVTGMHMAFGLLRERVKFPPEARENDLLETIGEEMQRLTQLINDLLNFSRYQSGL 437

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
              +     I+      +  F     + +           P + A   + + +    +  
Sbjct: 438 QKLELAPCAIDDLLEHAQLRFAEQAAHKQIELIKELDPPLPRIQADVAQLDRVLDNLLHN 497

Query: 329 C 329
            
Sbjct: 498 A 498


>gi|260774547|ref|ZP_05883460.1| signal transduction histidine kinase [Vibrio metschnikovii CIP
           69.14]
 gi|260610453|gb|EEX35659.1| signal transduction histidine kinase [Vibrio metschnikovii CIP
           69.14]
          Length = 642

 Score =  302 bits (774), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 99/516 (19%), Positives = 191/516 (37%), Gaps = 31/516 (6%)

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFF---VYSHGNLFY--ANPSFLLLTKYKSV 357
                  +L    +       +   + P   +    ++ G + +  ++P  L L      
Sbjct: 149 DLAATVEALIQAEELSNERLGKLTAQLPGVVYQFQRFASGKITFPFSSPQILDLYGITPE 208

Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
                A   S   +     D  AI   + + ++      +      Q       A    P
Sbjct: 209 QA---AQDASPAFERIHPDDLQAISDSIEHSANTLEYWQATYRVRYQGQDYRWFAGQAKP 265

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILS 476
              ++     +  +G   +  +    ++  E    +L S+ + +  GIA+ +   G  L 
Sbjct: 266 ERLSDGS---VLWHGYLHDIHEQEQARQTTERNEARLRSLFDFSPIGIALNDFETGQFLD 322

Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
            N A+     Y  E+ +   +     Q   S+    L  + +       EK  +      
Sbjct: 323 LNNALIAPTDYTREEFIALSYWDITPQEYQSLEEQALANLNTTGRYGPFEKEYIRKDGSR 382

Query: 537 KLLSLRIIIKKLPFSSCYSL-TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
             + L+ ++ K           + DI+E ++                  K  F++ +SHE
Sbjct: 383 YPVRLQGMLSKEQDGRTVIWSLIEDITERRKL--------------DKMKDQFISTISHE 428

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           +RTPLT+I G   ++     G + +          +R+   +  ++NDLLD+ K+ +GKM
Sbjct: 429 LRTPLTSIKGSLNLLAGGAVGSISDKAQA-LLVTAERNAQRLTTLINDLLDMEKLVAGKM 487

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715
            + F    L   + E I  +  YA +  ++++ S +    ++  D + + Q   N+LSNA
Sbjct: 488 PMTFLKQPLGPLLDETIDSLSSYAQQHNVVLQCSGSWPAVQVNVDGQRLIQALSNLLSNA 547

Query: 716 IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           I F+P G  I I         + + VRD G G+     ++  + F Q  +S   +  GTG
Sbjct: 548 IKFSPQGEAITIKVQQQDTN-IHILVRDRGQGVAPEFEDRLFQRFSQADSSDTRKLPGTG 606

Query: 776 LGLPLAKAMVDANMGKFYIFSTP-AKGTLIEIIFPL 810
           LGL + + +     G       P  +G    I  P+
Sbjct: 607 LGLAITQEICQQLGGSVMYR-QPNGRGAEFIIQLPI 641


>gi|86751330|ref|YP_487826.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           HaA2]
 gi|86574358|gb|ABD08915.1| Hpt sensor hybrid histidine kinase [Rhodopseudomonas palustris
           HaA2]
          Length = 877

 Score =  302 bits (774), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 83/378 (21%), Positives = 157/378 (41%), Gaps = 24/378 (6%)

Query: 443 NKRKMEIEVMQLCSIL----EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
            + ++E     +  +L       SD +   + E  ++       ++   PV  +     +
Sbjct: 229 AQFELERNTEIISLLLKDFQANASDWLWQTDSECRLVHVPDRFVEVARLPVNILRGAQLS 288

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----Y 554
             L    P            + LR+ + ++ +            +  + +   +     Y
Sbjct: 289 DVLGMLCPEDGRCAAAVAAKMALREPMHELVVHVMIGGTQRLWSLTARPMLDHNGEFTGY 348

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                D++E  + +         AE E+  KSDFLA +SHEIRTP+  ++G +  +   +
Sbjct: 349 RGVGRDVTERWRAEQ--------AEAENRAKSDFLAMMSHEIRTPMNGVLGLANSLLETK 400

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                +P        I  SG+ +L I+ND+LD+SK+E+G++       S    V    S+
Sbjct: 401 L----DPEQQHAVTTIRDSGDNLLRILNDILDLSKLEAGRIEFEQVNFSPSVLVDAVRSI 456

Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHT 732
           V+  A  K + ++      +P  +  D + ++Q+ LN+  NA+ FT  GG  I+++    
Sbjct: 457 VEPNARAKGLTLKIDVDPRLPPALTGDAQRIRQVLLNLAFNAVKFTDRGGVTIVLTCVRR 516

Query: 733 SNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
            +    +   V DTG+G+    +      F Q   S   R  GTGLGL +++ +V+   G
Sbjct: 517 DDAYATIEWQVTDTGIGIPLDRVGSLFTDFAQGDVSINRRFGGTGLGLAISRRIVEQMGG 576

Query: 791 KFYIFSTPAKGTLIEIIF 808
              + S P +G+      
Sbjct: 577 AIDVTSKPGEGSTFRFSL 594



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 50/377 (13%), Positives = 100/377 (26%), Gaps = 16/377 (4%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD---ILHIDPNNHIGDLLKRQNT 142
            W  D+   L  + +   +        + G +L DV              +   +  +  
Sbjct: 255 LWQTDSECRLVHVPDRFVEVARLPVNILRGAQLSDVLGMLCPEDGRCAAAVAAKMALREP 314

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
            +       I GT   +   L A P+   N EF+G+RG G                    
Sbjct: 315 MHELVVHVMIGGT-QRLW-SLTARPMLDHNGEFTGYRGVG--RDVTERWRAEQAEAENRA 370

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
           K   L  +   H         +    S         +  ++T      D++L+     L 
Sbjct: 371 KSDFLAMMS--HEIRTPMNGVLGLANSLLETKLDPEQQHAVTTIRDSGDNLLRILNDILD 428

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN-SKESFEYLSHRNHPSLSAYFDEGENL 321
            S+  +   + +F  +N +         ++    ++     L     P L          
Sbjct: 429 LSKLEA--GRIEFEQVNFSPSVLVDAVRSIVEPNARAKGLTLKIDVDPRLPPALTGDAQR 486

Query: 322 TPETVDKCP-IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN- 379
             + +             G +            Y +++      G+   LD       + 
Sbjct: 487 IRQVLLNLAFNAVKFTDRGGVTIVLTCVRRDDAYATIEWQVTDTGIGIPLDRVGSLFTDF 546

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK--ANQFPENMPQNGIEPED 437
           A   V + R         A    I      ++ +T  P E        +    N +  + 
Sbjct: 547 AQGDVSINRRFGGTGLGLAISRRIVEQMGGAIDVTSKPGEGSTFRFSLDLPWTNALISDY 606

Query: 438 VDTRINKRKMEIEVMQL 454
              R+    +   +  L
Sbjct: 607 RLDRVGNDDLRTRIAML 623


>gi|91788257|ref|YP_549209.1| PAS/PAC sensor hybrid histidine kinase [Polaromonas sp. JS666]
 gi|91697482|gb|ABE44311.1| PAS/PAC sensor hybrid histidine kinase [Polaromonas sp. JS666]
          Length = 618

 Score =  302 bits (774), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 102/406 (25%), Positives = 194/406 (47%), Gaps = 22/406 (5%)

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
            + + ++ +  +  ++   +Q  +IL + +  I   + +GII   N    ++ GY   ++
Sbjct: 64  AKADGIEVKRQEALLKTGALQ-TAILTSENFSIIATDEKGIIQLFNVGAERMLGYMAAEV 122

Query: 493 LRK-PFTVFLEQNTPSVMNHYLTEILSLDLRQTLE-------------KITLGSTKEEKL 538
           + K   +   +          L+  L+  +    E                    K+   
Sbjct: 123 VNKINPSDIHDPQEVMARAQALSVELATTITPGFEALAFKASRGIEDIYELTYICKDGSR 182

Query: 539 LSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
               + I  L         Y L   D S  KQ +  L  A  +AEK +  KSDFL+ +SH
Sbjct: 183 FPAIVSITALRDDFGTVIGYLLIGTDNSVRKQVEVALKEAMAVAEKANLAKSDFLSSMSH 242

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           E+RTPL+AI+GF+++I  +   P   P      + I ++G  +L+++N++LD++ IESG+
Sbjct: 243 ELRTPLSAILGFAQLI--ESGTPQPTPSQKRSVDQILQAGWYLLELINEILDLALIESGR 300

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714
           ++L  EPVSL E + E  +LV+  A ++ I +     +    + AD   +KQ+ +N+LSN
Sbjct: 301 LSLSLEPVSLAEVMLECETLVESQAAKRGIRVTFPQFSLPCFVKADRTRLKQVLINLLSN 360

Query: 715 AIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           AI +  SGG +++   + S + + + V DTG G+   ++ +  +PF ++   +    +GT
Sbjct: 361 AIKYNTSGGTVVLKCVNVSPQRIRICVEDTGEGLNPAKIAQLFQPFNRL-GQEANTEQGT 419

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820
           G+GL + K +++   G   + S   +G++  I   L +    H  +
Sbjct: 420 GIGLVMTKRLIELMGGAIGVESIVGQGSVFWIEMDLTEERELHPVL 465



 Score = 39.6 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 26/239 (10%), Positives = 57/239 (23%), Gaps = 25/239 (10%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGM-RLCDVSDILHIDPN----------------N 131
            D  G ++  +    + +G  A +++      D+ D   +                    
Sbjct: 98  TDEKGIIQLFNVGAERMLGYMAAEVVNKINPSDIHDPQEVMARAQALSVELATTITPGFE 157

Query: 132 HIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN 191
            +     R      + T    +G+    P  ++   +        G+   G    N V  
Sbjct: 158 ALAFKASRGIEDIYELTYICKDGS--RFPAIVSITALRDDFGTVIGYLLIGT--DNSVRK 213

Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD 251
                 K         +  K    S    +              +++     T       
Sbjct: 214 QVEVALKEAMAVAEKANLAKSDFLSSMSHELRTPLSAILGFAQLIESGTPQPTPSQKRSV 273

Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310
           D +    + LL      + E  D   I   + +      +L     E    +  +    
Sbjct: 274 DQILQAGWYLL----ELINEILDLALIESGRLSLSLEPVSLAEVMLECETLVESQAAKR 328


>gi|281212452|gb|EFA86612.1| histidine kinase [Polysphondylium pallidum PN500]
          Length = 1702

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 85/272 (31%), Positives = 133/272 (48%), Gaps = 12/272 (4%)

Query: 556  LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
            +    I   K+   K + AK+ AE  S  KSDF+A +SHEIRTP+  IIG +++  +   
Sbjct: 1055 IINEMIHNLKETTIKNTLAKEAAEAASRAKSDFMANMSHEIRTPMNGIIGMTDLTLDTEL 1114

Query: 616  GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
                N    EY   +  S   +L I+ND+LD SKIE+G++ L     SL   + E +  +
Sbjct: 1115 ----NAEQREYLTMVQSSAASLLTIINDILDFSKIEAGRLELDKSDFSLRTILYETLKTL 1170

Query: 676  QLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS- 733
               +++K + I      + P  ++ D   ++QI  N++ NAI FT  G ++ ++      
Sbjct: 1171 AWRSHQKGLEIICDIIPDTPDHLIGDPGRLRQIVTNLVGNAIKFTAEG-EVSLTVKLEDI 1229

Query: 734  -NEEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
             N EV     V DTG+G+   +L    + F Q   S   +  GTGLGL ++  +V+   G
Sbjct: 1230 TNGEVTLAFSVADTGIGIPAEKLHLIFEAFSQADGSITRKYGGTGLGLTISTRLVELMGG 1289

Query: 791  KFYIFSTPAKGTLIEII--FPLYDTSHPHDCI 820
            K    S P KG+  + I  FPL      +  I
Sbjct: 1290 KLKAESIPGKGSRFDFIAKFPLGQAPTENSKI 1321


>gi|329890191|ref|ZP_08268534.1| mmoS [Brevundimonas diminuta ATCC 11568]
 gi|328845492|gb|EGF95056.1| mmoS [Brevundimonas diminuta ATCC 11568]
          Length = 541

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 85/368 (23%), Positives = 163/368 (44%), Gaps = 14/368 (3%)

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
               L + L+  +  +AI +R G IL  N     + GY  E+++ +   V      P   
Sbjct: 19  RRAGLSAALDEAAI-VAITDRAGRILYCNDKFEAVSGYSREELIGQTHRVVNSGVHPRDY 77

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWK 565
              L   ++    +         TK  +   +   I     S      Y+    ++S+  
Sbjct: 78  FRNLYRTIAGG--EVWRGTIQNRTKSGEPYWVDTTIVPNLGSDGRPETYTAIRFEVSDHV 135

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           +    L  A+  A + +  +  F A +SHE+RTPL A++G +  + +         R  E
Sbjct: 136 RALKALELAQAEARQAAEVRDRFFANISHEVRTPLNAVLGLASALAHTTLTS----RQTE 191

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
               I  +G+ +  +++D+LD+SK+++G+ +L   P  L   +   + + +  A +K + 
Sbjct: 192 MLKLITGAGDALRRVLDDMLDLSKMQAGQFSLSLTPFDLRTDIEAVVEMRRAVAEDKGLT 251

Query: 686 IRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSN-EEVILRVR 742
           +  +FA +   +++ D   + QI  N++SNA+ FT  G   + +      N E +I+ V 
Sbjct: 252 LDVAFAPSAQGQVIGDGVRITQIVSNLVSNAVKFTAEGRVSVRVDVRAEDNREHLIIEVE 311

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG+G       +   PF Q  ++   +  GTGLGL + K++ +   G+    S   +G+
Sbjct: 312 DTGMGFDAEAARRLFDPFVQADDAISRQFGGTGLGLSICKSLAELMGGEIAAESALGEGS 371

Query: 803 LIEIIFPL 810
           L  +  P+
Sbjct: 372 LFRVALPV 379



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/350 (9%), Positives = 82/350 (23%), Gaps = 23/350 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI-DPNNHIGDLLKRQNTWYGKT 147
            D  G +   +++     G    ++IG     V+  +H  D   ++   +     W G  
Sbjct: 36  TDRAGRILYCNDKFEAVSGYSREELIGQTHRVVNSGVHPRDYFRNLYRTIAGGEVWRGTI 95

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRG--FGIVHVNRVDNDPRALGKRLDKKFS 205
                 G   +V   +  +P    +     +    F +    R             +   
Sbjct: 96  QNRTKSGEPYWVDTTI--VPNLGSDGRPETYTAIRFEVSDHVRALKALELAQAEARQAAE 153

Query: 206 HLHEIKKGHS-SVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
                    S  V      +    S   H  + ++ + + +      D L+     +L  
Sbjct: 154 VRDRFFANISHEVRTPLNAVLGLASALAHTTLTSRQTEMLKLITGAGDALRRVLDDMLDL 213

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
            +    +     T    +   +      +  +++    L     PS             +
Sbjct: 214 SKMQAGQFSLSLTPFDLRTDIEAVVEMRRAVAEDKGLTLDVAFAPSAQGQVIGDGVRITQ 273

Query: 325 TVDKC-PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
            V           + G +                 D+        L+   + +       
Sbjct: 274 IVSNLVSNAVKFTAEGRV-------------SVRVDVRAEDNREHLIIEVEDTGMGFDAE 320

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
                 D       A     +      L ++           E   ++ +
Sbjct: 321 AARRLFDPF---VQADDAISRQFGGTGLGLSICKSLAELMGGEIAAESAL 367



 Score = 45.8 bits (107), Expect = 0.028,   Method: Composition-based stats.
 Identities = 13/133 (9%), Positives = 31/133 (23%), Gaps = 7/133 (5%)

Query: 316 DEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
                     +D+  I       G + Y N  F  ++ Y   + I      +  +    +
Sbjct: 17  WPRRAGLSAALDEAAIVAITDRAGRILYCNDKFEAVSGYSREELIGQ----THRVVNSGV 72

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
              +  + +    +          +     + E    +                   I  
Sbjct: 73  HPRDYFRNLYRTIAGGEVW--RGTIQNRTKSGEPY-WVDTTIVPNLGSDGRPETYTAIRF 129

Query: 436 EDVDTRINKRKME 448
           E  D     + +E
Sbjct: 130 EVSDHVRALKALE 142


>gi|325109823|ref|YP_004270891.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
            5305]
 gi|324970091|gb|ADY60869.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
            5305]
          Length = 1194

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 115/772 (14%), Positives = 252/772 (32%), Gaps = 78/772 (10%)

Query: 90   DAHGYLKEISEELPKTIGNYAFKMI--GMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGK 146
            +A G + + ++ L + IG     +    +   D++     + +   + +  ++  +   +
Sbjct: 298  NATGEITDANDLLLEMIGYSRQDLEQNKISWRDLTPEEFREKDERALKENNEQGFSTPYE 357

Query: 147  TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                   G  + + I  + LP       F       ++ + R      A  + L+ + S 
Sbjct: 358  KEWIHKSGQRIPILIGSSCLPGEEVRGSFW------VLDMTRER----AARQTLELQASV 407

Query: 207  LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
            L  + +G   + +    I+  +     + +  +V S  E    +       +   +    
Sbjct: 408  LESMTEGVCVLNEAGLVIYRNR--AERVLLGLEVDSEQESLPQRPVCQIPAEAMPILEAH 465

Query: 267  SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL--SHRNHPSLSAYFDEGENLTPE 324
             +   +  +   +            +    ++ F  +        +      E E    +
Sbjct: 466  GTWEGESRYQRPDGRILILFARIAQVNMEGEQFFVRVHEDVTARRAADDQLHESEERFRQ 525

Query: 325  TVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
              +     F++     G+L Y +PSF                    L  A    D + ++
Sbjct: 526  LAENIDDVFYIADVETGSLSYVSPSFKRTWGVDPT----RLKSSDPLFSAVHPRDQDHVR 581

Query: 383  PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
              +  R          R+ T          +    F   +         G+  +  + + 
Sbjct: 582  ESLQRRKRGEATVCEFRIFT---PGGQLKWIRDRSFPIRDSAGHVARIAGVAEDMTERKR 638

Query: 443  NKRKME---IEVMQLCSILE-----------ATSD-----GIAIINREGIIL-----STN 478
             +  +         L  +++           A  D      + I + EG ++       N
Sbjct: 639  IELDLRFLSEASRSLSGLIDFESTLQVVASLAVPDFADWCLVHIADSEGQMIPLAVAHVN 698

Query: 479  R-------AVSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEILSLDL-------- 521
                     VS+ F    ED     + F     +   ++   +L  +   D         
Sbjct: 699  PDKVSEAIRVSEQFPPSSEDSAGAGRVFRTGKPEMLETISEDFLQAVAQNDKHLEILRAF 758

Query: 522  --RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579
                 +        +   ++S         +         D++         +      +
Sbjct: 759  QMESYMSVPLTLRGEVLGVISFVTAESARRYKQADLDVAVDLAHRAAVAIDNARLYSDLK 818

Query: 580  KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639
                 K +FLA ++HE+R PL  I    ++++          +  E    ++     ++ 
Sbjct: 819  DADRRKDEFLAMLAHELRNPLAPIRSGLDLLR-------IGEQRPEVLELMNNQLQHLVR 871

Query: 640  IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA 699
            +V+DLLD+S+I  GK+ L  E V L E ++  +  V      +   +     +    +  
Sbjct: 872  LVDDLLDVSRILRGKVELRKEQVELRELITRTVDAVNDQFTSRNQELTVRLPDAACWLNG 931

Query: 700  DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKP 759
            D   + Q+  N+LSNA  +TP  G++ IS   T    + + VRD+G+G+ +  L    + 
Sbjct: 932  DSVRLSQVIHNLLSNASKYTPPDGKVSISLERTER-FLRISVRDSGIGIDSKLLPHVFEL 990

Query: 760  FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFPL 810
            F Q   S      G G+GL + K++++ + G     S    KG+   I  P+
Sbjct: 991  FTQAERSIDRSQGGLGIGLTVVKSLIELHGGTVSARSKGKGKGSEFRIRLPV 1042



 Score =  122 bits (305), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 51/511 (9%), Positives = 135/511 (26%), Gaps = 39/511 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH----IDPNNHIGDLLKRQNTWY 144
            D  G +  ++    +  G    +     L  V  I++        N +  ++       
Sbjct: 166 TDPEGRVTMMNGVAERLTGWNQKEANTQPLTSVFRIINETTRATVENPVAKVIATGAVVG 225

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
                  I  T    PID +A PI   + +  G     I       +      +  + +F
Sbjct: 226 LANHTILISRTGEEWPIDDSASPILDDDGKLLGI--ILIFRDITEQHAWLNRLEESENRF 283

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPP----PHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
            ++ E +           +I            + R   + + ++      ++  + ++  
Sbjct: 284 RNVVESRMIGIGFWNATGEITDANDLLLEMIGYSRQDLEQNKISWRDLTPEEFREKDERA 343

Query: 261 LLTSEESSL--PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
           L  + E     P ++++   +  +         L         ++      +      + 
Sbjct: 344 LKENNEQGFSTPYEKEWIHKSGQRIPILIGSSCLPGEEVRGSFWVL---DMTRERAARQT 400

Query: 319 ENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
             L    ++       V    G + Y N +  +L   +   + E            +   
Sbjct: 401 LELQASVLESMTEGVCVLNEAGLVIYRNRAERVLLGLEVDSEQES--------LPQRPVC 452

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
               + + +  +  T           + +      +                   +  + 
Sbjct: 453 QIPAEAMPILEAHGT---WEGESRYQRPDGR---ILILFARIAQVNMEGEQFFVRVHEDV 506

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILRK- 495
              R    ++     +   + E   D   I + E G +   + +  + +G     +    
Sbjct: 507 TARRAADDQLHESEERFRQLAENIDDVFYIADVETGSLSYVSPSFKRTWGVDPTRLKSSD 566

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555
           P    +       +   L      +            T   +L  +R     +  S+ + 
Sbjct: 567 PLFSAVHPRDQDHVRESLQRRKRGEATVC---EFRIFTPGGQLKWIRDRSFPIRDSAGHV 623

Query: 556 L----TMHDISEWKQEKNKLSHAKKIAEKES 582
                   D++E K+ +  L    + +   S
Sbjct: 624 ARIAGVAEDMTERKRIELDLRFLSEASRSLS 654



 Score = 91.6 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 51/442 (11%), Positives = 131/442 (29%), Gaps = 65/442 (14%)

Query: 317 EGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVD--------DIEIAGGLS 367
                +   +D  P     V  +G +   N +   L    S            E A  + 
Sbjct: 1   MIPVHSQALLDSLPDATLLVSRNGIVLACNRAAKTLLSASSDPTGQPLHELWNETAEQVE 60

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
            LL     + +     + L                +    +++     +      +  + 
Sbjct: 61  ALLRTFSQASHAVPGKLRLSGDSGIEQTVQCYGSRLAVAEDSAEDQIVLRLVPPKEALQQ 120

Query: 428 MPQNGIEPEDVDTRINKRKM-----EIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
                 +   +   + +R++       E  +L + L +  D + + + EG +   N    
Sbjct: 121 FSVLNEKIAQLTEEVTRRRLSERNLRRERERLKTTLASIGDAVIVTDPEGRVTMMNGVAE 180

Query: 483 KLFGYPVEDILRKPFTVFLE---QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
           +L G+  ++   +P T       + T + + + + ++++      L   T+  ++  +  
Sbjct: 181 RLTGWNQKEANTQPLTSVFRIINETTRATVENPVAKVIATGAVVGLANHTILISRTGEEW 240

Query: 540 SLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA--RVS 593
            +      +           L   DI+E     N+L  ++         +   +     +
Sbjct: 241 PIDDSASPILDDDGKLLGIILIFRDITEQHAWLNRLEESENRFRNVVESRMIGIGFWNAT 300

Query: 594 HEI---RTPLTAIIGFS-EVIKNQRFG--PLGNPRYIEYANY------------------ 629
            EI      L  +IG+S + ++  +     L    + E                      
Sbjct: 301 GEITDANDLLLEMIGYSRQDLEQNKISWRDLTPEEFREKDERALKENNEQGFSTPYEKEW 360

Query: 630 IDRSGNLVLDIVND-------------LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
           I +SG  +  ++               +LD+++  + +  L  +   L+        L +
Sbjct: 361 IHKSGQRIPILIGSSCLPGEEVRGSFWVLDMTRERAARQTLELQASVLESMTEGVCVLNE 420

Query: 677 L-----YANEKRILIRTSFANN 693
                     +R+L+     + 
Sbjct: 421 AGLVIYRNRAERVLLGLEVDSE 442


>gi|17231988|ref|NP_488536.1| two-component system sensory histidine kinase [Nostoc sp. PCC 7120]
 gi|1546076|gb|AAC32398.1| HepK [Nostoc sp. PCC 7120]
 gi|17133632|dbj|BAB76195.1| two-component system sensory histidine kinase [Nostoc sp. PCC 7120]
          Length = 575

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 78/281 (27%), Positives = 134/281 (47%), Gaps = 11/281 (3%)

Query: 544 IIKKLPFSSCYSL--TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
                              I    +   +L  AK++AE  S  KS FLA VSHE+RTPL 
Sbjct: 296 APVTTEDEIGLLAKSLNRLIERVSERTKELEQAKELAEAASKAKSIFLANVSHELRTPLN 355

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           A+IG S+++K+       +  +      I+ +G  +L+++ND+LD+SKIE+GKM L+ E 
Sbjct: 356 AVIGLSQLLKDDAADLNLSGEFTSDLETINSAGRHLLELINDILDLSKIEAGKMTLYPEI 415

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
             +   ++  +  V+    +   L+      ++  + AD   ++Q+ LN+LSNA  FT +
Sbjct: 416 FDVVTLINNVVVTVKPTIEKNNNLLEIYCDEHLGTMYADQTRMRQVLLNLLSNAAKFT-T 474

Query: 722 GGQIIISTTHTSN--------EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
            G+I ++                +   V DTG+GM+  + ++  +PF Q   S   +  G
Sbjct: 475 NGRIKLTVRREKEDFLPEMPFGAISFTVSDTGIGMSPSQQQQLFQPFTQGDTSTTKKYGG 534

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           TGLGL +++       G+  + S    G+   +  PL + S
Sbjct: 535 TGLGLAISRHFCQMMGGEIIVKSQLGLGSTFTVYLPLQEQS 575


>gi|116748386|ref|YP_845073.1| multi-sensor signal transduction histidine kinase [Syntrophobacter
           fumaroxidans MPOB]
 gi|116697450|gb|ABK16638.1| multi-sensor signal transduction histidine kinase [Syntrophobacter
           fumaroxidans MPOB]
          Length = 845

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 109/771 (14%), Positives = 242/771 (31%), Gaps = 72/771 (9%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMR--LCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
            G L  +S    +  G    + I     L ++         +     +  +         
Sbjct: 97  DGRLLYVSPACERITGYRPGEFIEQPSLLREMILPEDRRLWDEHRHDVHAEQPSRETEFR 156

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
                 ++   I+ A   +     E+ G +           ++ +   +R +++      
Sbjct: 157 IRRHDGSIR-WINHACRTVTDERGEYLGVQSCN--RDVTHLHEAQEALQRSEEQCRAFIA 213

Query: 210 IKKGHSSVEKEKYDIFS-----------------QQSPPPHLRMKNKVSSLTEYYAHKDD 252
           +     S+ +    I +                  +      RM    ++     A   D
Sbjct: 214 LSTEGISLWEVDGPIPTTLAEDEQIERFYWHARLAECNDVFARMYGMGTAGEMLGARLGD 273

Query: 253 VLKTEKYPLLTSEESSLPE-------QEDFHTINLNQYTKKQYFGTLQNNSKESFEYL-- 303
           +L   +   +    S +         +   +    N+++ +        + +    +   
Sbjct: 274 ILTPTETENIEFLRSFIRSGYNVKSCETYGYDQLRNRHSFRTGMVGRCVDGRLVEAWSIQ 333

Query: 304 -SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIE 361
               +   L       ++    T D    P  +   G  +  ANP+         V    
Sbjct: 334 HDMTDLARLHRQVRRADDEWQTTFDSIADPIMILDRGFRILRANPAAAAFLNVAPVA--- 390

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
              G               + PV                 T  ++ +             
Sbjct: 391 -IPGKHCYTLMHGKDSPVPLCPVRAMMKTG------IHTETELYDEKRKAWFLVSADPLP 443

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
               E            +++I +  +        SIL + +D IAII+  G+IL+ N A 
Sbjct: 444 GPEGEVAGAVHTVKNITESKITRDAIRDSEAFNRSILASLNDRIAIIDGNGVILAVNAAW 503

Query: 482 SKL-----------FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530
            +             G  +  +      V    +        +  +L+        +   
Sbjct: 504 ERFAAENDTSSPPRVGVGINYLDVCHRAVQTRDDLAEQALRGIRSVLNGRKESFSLEYPC 563

Query: 531 GSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH--KSDF 588
            +  E++  ++R++  K        +   D++E K+ +++           +      + 
Sbjct: 564 DALSEKRWFAMRVMPFK-RAGGGAVICHADVTERKRAEDEARRRMIELAHVTRVATLGEL 622

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN-PRYIEYANYIDRSGNLVLDIVNDLLDI 647
            A ++HEI  PLTAI+  ++  ++     +       +  + I      V +++  +  +
Sbjct: 623 AASLAHEINQPLTAILSNAQAAQHFLAREVPETDEIRQILDDIIEDDKRVSEVIRRMRSL 682

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707
            K  +       E V++ +AV E+++L++  +    + I T F   +P + AD   ++Q+
Sbjct: 683 LKKGAA----SHERVNIHDAVLESVALIESASLLNGLSITTEFDAGMPIVCADPVQLQQV 738

Query: 708 ALNILSNA---IHFTPSGGQ-IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
             N++ NA   +  TP+  + I I T       V L V D+G G+    +    +PF   
Sbjct: 739 LFNLMVNAAGAMKNTPNPSRKIRIGTLLRDERTVQLSVTDSGTGIDEAVMAHLFEPFVTT 798

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
                    G G+GL +++ ++ A+ G     + P  G       PL   S
Sbjct: 799 KP------GGMGMGLSISQTIIKAHGGTIGAKNNPEGGATFFFSLPLDKES 843



 Score = 48.1 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 28/369 (7%), Positives = 69/369 (18%), Gaps = 38/369 (10%)

Query: 59  QESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRL 118
                     D E    FD I   +     +D    +   +      +      + G   
Sbjct: 340 ARLHRQVRRADDEWQTTFDSIADPIMI---LDRGFRILRANPAAAAFLNVAPVAIPGKHC 396

Query: 119 CDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGF 178
             +               + +                       ++A P+     E +G 
Sbjct: 397 YTLMHGKDSPVPLCPVRAMMKTGIHTETELY----DEKRKAWFLVSADPLPGPEGEVAGA 452

Query: 179 RGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKN 238
                V         R   +  +     +        ++      I +  +       +N
Sbjct: 453 --VHTVKNITESKITRDAIRDSEAFNRSILASLNDRIAIIDGNGVILAVNAAWERFAAEN 510

Query: 239 KVSSLT----------------EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQ 282
             SS                  +      +        +L   + S    E        +
Sbjct: 511 DTSSPPRVGVGINYLDVCHRAVQTRDDLAEQALRGIRSVLNGRKESFS-LEYPCDALSEK 569

Query: 283 YTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD----------KCPIP 332
                     +         + H +        DE      E                + 
Sbjct: 570 RWFAMRVMPFKRAGG--GAVICHADVTERKRAEDEARRRMIELAHVTRVATLGELAASLA 627

Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
             +        +N         + V + +    +   +       +  I+ +        
Sbjct: 628 HEINQPLTAILSNAQAAQHFLAREVPETDEIRQILDDIIEDDKRVSEVIRRMRSLLKKGA 687

Query: 393 CIAASARLH 401
                  +H
Sbjct: 688 ASHERVNIH 696


>gi|83717305|ref|YP_438343.1| two-component system sensor protein [Burkholderia thailandensis
           E264]
 gi|83651130|gb|ABC35194.1| two-component system sensor protein [Burkholderia thailandensis
           E264]
          Length = 952

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 128/679 (18%), Positives = 230/679 (33%), Gaps = 63/679 (9%)

Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH 233
            F   +G+ ++H  +      ALG     +          + ++ + +  +   QSP P 
Sbjct: 50  RFDAHQGYAVLHTPQGAPAALALGIPAPGRS---ASTFAPYLALLETQLLMGDGQSPLPD 106

Query: 234 LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293
            R++    S    Y       + +         S+                 +     + 
Sbjct: 107 DRVEGYSFSPDGTYLSLLWSREDQAPEAFIESHSASG---VIGDAMRGIRYLRDASTIIP 163

Query: 294 NNSKESFEYLSHRNHP--------SLSAYFDEGENLTPETVDKCPIPFF----------- 334
             +     +L     P         +    D    L    V   P+  F           
Sbjct: 164 LRADRRTVWLPPHPDPLTGKPMIRVVQPAIDAAGKLFAIYVRSLPLDMFYSNLNDTPAGG 223

Query: 335 ----VYSHGNLFY--ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388
               V   G +     NP         S   I   G                 +  M   
Sbjct: 224 TLTIVDRKGRVIIGSWNPPGRDGDVTDSALSIRSLG-------DGFDGLVERHENGMFVT 276

Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR------I 442
           SD+        +H   W    + A+              +    +     D +       
Sbjct: 277 SDQLPGTDWVLVHAYSWK-TIAAALALRFSLMTGFAAGIIVMLWVLAIQFDRKGLIPNYR 335

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
             +++    +   +IL     G+ +++  +G +L  N A+ +L      + L        
Sbjct: 336 RAQRLLESEVLNRAILRTAPVGLGLLSAHDGSVLLQNNAMLELSARTSGEPLPNRLWDAY 395

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDI 561
            Q T    +               +            L   ++  +   ++    T+ DI
Sbjct: 396 RQTTGRSNDE-------DGALLLHDLAIEREDSNPIYLQANVVAARYRGANVLLCTLLDI 448

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           S  K+ + KL  A+  +++ +  KS FLA +SHEIRTPL AIIG  E+++  +     + 
Sbjct: 449 SMRKESELKLKEARIASDQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSQLSNQQSE 508

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
           R       ++   N +L I+ND+LD+SK+ESG+M L   P  +   + E +      A  
Sbjct: 509 R----LQVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIQALLQEIVDAYAPLAES 564

Query: 682 KRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIST----THTSNEE 736
           K + + ++    + R    D   ++QI  N++ NAI FT  G  I +          +  
Sbjct: 565 KGLQLLSNLGEGVARYYSGDPARIRQILSNLIGNAIKFTERG-HISVDVHQAKAAQGDSA 623

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           + + V DTG+G+    +      + Q   S   R  G+GLGLPL K +     G   + S
Sbjct: 624 IEIWVNDTGIGIRPDRIATLFDVYTQADTSIHRRFGGSGLGLPLCKRLATIMGGSIEVDS 683

Query: 797 TPAKGTLIEIIFPLYDTSH 815
            P  GT + ++ PL +  H
Sbjct: 684 LPDFGTTVTVVLPLREARH 702


>gi|157154824|ref|YP_001463571.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli E24377A]
 gi|157076854|gb|ABV16562.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           E24377A]
          Length = 949

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 99/495 (20%), Positives = 187/495 (37%), Gaps = 41/495 (8%)

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
             P+   +             + LT  +S    +                    + ++L 
Sbjct: 239 TLPMGVTILDENGHT-----LISLTGPESKIKGDPRWMQERSWFGY----TEGFRELVLK 289

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV---DTRINK 444
           ++      +      +    E    +              +       E         + 
Sbjct: 290 KNLPPSSLSIVYSVPVDKVLERIRMLILNAILLNVLAGAALFTLARMYERRIFIPAESDA 349

Query: 445 RKMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            ++E        I+ +   GI I+   +G+ + +N            +  ++        
Sbjct: 350 LRLEEHEQFNRKIVASAPVGICILRTADGVNILSNELAHTYLNMLTHEDRQR-------- 401

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                    LT+I+       ++      T     L +  +  +    +     + D+S 
Sbjct: 402 ---------LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSS 448

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + +  L    + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R 
Sbjct: 449 RVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR- 506

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
                 ++ S +L+L I++D+LD SKIES ++ +     S  E ++   +        K+
Sbjct: 507 --LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQ 564

Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           + +      ++P  + +D   ++Q+  N+LSNAI FT +G  I++       + + +RVR
Sbjct: 565 LGLYCFIEPDVPVALNSDPMRLQQVISNLLSNAIKFTDTG-CIVLHVR-ADGDYLSIRVR 622

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTGVG+   E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+
Sbjct: 623 DTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGS 682

Query: 803 LIEIIFPLYDTSHPH 817
              +  PLY   +P 
Sbjct: 683 QFTVRIPLYGAQYPQ 697


>gi|257453593|ref|ZP_05618883.1| phosphate regulon sensor kinase PhoR [Enhydrobacter aerosaccus
           SK60]
 gi|257449051|gb|EEV24004.1| phosphate regulon sensor kinase PhoR [Enhydrobacter aerosaccus
           SK60]
          Length = 442

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 77/372 (20%), Positives = 153/372 (41%), Gaps = 31/372 (8%)

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
              ++  ++    V ++   L A  D I +I++   I   N +  +LF +   D   +  
Sbjct: 85  RQEKLAHQQTVSLVQKVRDSLSALQDSIILIDKNDCIEWWNNSAERLFQFKAPD-QGRNV 143

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT 557
              +         H++ +                         ++  I K        L 
Sbjct: 144 LTIIRNPLFHQYYHHIEDYPDG---------VRIHNPSNIERYVQCKITKFGQEK--LLL 192

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
           ++D++ ++  +                + DF+A VSHE+RTPLT I+G+ E +  Q   P
Sbjct: 193 IYDVTRFQHLE--------------QMRKDFVANVSHELRTPLTVIMGYVETLSEQ---P 235

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
             +PR       + +    + +I+NDLL +S++E+ +     + + + + + +     Q+
Sbjct: 236 ELDPRIARAFTQMMQQSQRMNNIINDLLLLSRLENDEKPAEPKDIDIPKMLMQLFDDAQM 295

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737
           Y      +I     + +  IL     ++    N+++NA+ +TP GG+I IS        V
Sbjct: 296 YNKSYDHMIHLHIDSTL-HILGYEDYLRSALSNLITNAMKYTPKGGEISISWHEYDAG-V 353

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
              V D G+G+    +++  + F ++   +     GTGLGL + K ++  +     I ST
Sbjct: 354 CFSVTDNGIGIEQRHIQRLTERFYRVDTGRSRETGGTGLGLAIVKHVLYQHHATLDITST 413

Query: 798 PAKGTLIEIIFP 809
             KG+   + FP
Sbjct: 414 VGKGSTFTVTFP 425


>gi|150015596|ref|YP_001307850.1| histidine kinase [Clostridium beijerinckii NCIMB 8052]
 gi|149902061|gb|ABR32894.1| histidine kinase [Clostridium beijerinckii NCIMB 8052]
          Length = 781

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 82/287 (28%), Positives = 148/287 (51%), Gaps = 15/287 (5%)

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
           E   L   +  +LL +   +++        +   +I E K  + KL  AK+ AE+ +S K
Sbjct: 354 ELEVLVDKRTSQLLEVNGSLEETN-----CMLEEEIEEHKLTETKLKAAKEEAERANSAK 408

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
           S FLA +SHEIRTP+  I+G + +++  +         I+    I+ S   +L I+ND+L
Sbjct: 409 SQFLANMSHEIRTPMNGIMGMTSLLEFSKL----TDEQIDIVKMIETSSKHLLQIINDIL 464

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSV 704
           D+S ++ GK+ L  E +++   ++E+ +L    A  K + +     NN+P  I+ D   +
Sbjct: 465 DLSVMDVGKIELKPERINIFNLMNESRNLFTYLAENKGLKLEIIVDNNLPNEIILDKGRL 524

Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPF 760
            Q+  N++ NAI FT  G +I +S     ++E    ++  V+DTG+G+   ++ +    F
Sbjct: 525 MQVLSNLIGNAIKFTEKG-KIQVSVDKVEDKENKVKLMFSVKDTGIGIKEEDIPRLFNYF 583

Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
            Q+  S   + +GTGLGL ++K +V+   G+  + S   KG+     
Sbjct: 584 TQLDISASKKFQGTGLGLAISKNIVELMGGEISVESQYGKGSTFYFT 630


>gi|284165566|ref|YP_003403845.1| multi-sensor signal transduction histidine kinase [Haloterrigena
           turkmenica DSM 5511]
 gi|284015221|gb|ADB61172.1| multi-sensor signal transduction histidine kinase [Haloterrigena
           turkmenica DSM 5511]
          Length = 793

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 102/698 (14%), Positives = 223/698 (31%), Gaps = 47/698 (6%)

Query: 137 LKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRAL 196
           L+ +    G +      G +      L A       R FS  R    +            
Sbjct: 121 LRERGVKSGLSVSV---GPDERPWGLLRAHAT--ERRAFSD-RDAAFLRSVATVLASAVE 174

Query: 197 GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ-------SPPPHLRMKNKVSSLTEYYAH 249
             R +++F  + E       +      +                            +   
Sbjct: 175 NARTERRFEAIFEDPNILVGLLDPDGTVLDINGTAMEYIDADLADVTGEPFWETPWWGRG 234

Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
            D     E++    +E   +  + D    +  +YT    F  + ++  +    +      
Sbjct: 235 DDARADVEEWTNRAAEGEYVEFETDLTRPSGERYTINGVFRPVTDDDGDVVSIIVSDRDV 294

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYSHGNLF-----YANPSFLLLTKYKSVDDIEIAG 364
           +     +         ++       V +           A PSF            +   
Sbjct: 295 TERKERERYLEDAKAQLEAATDAGAVGTWEWHIPEDEFVAGPSFARTFGIDPEAARDGVP 354

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
             S L    +   +   + +     +        R   ++        +      +A+  
Sbjct: 355 LESLLSSVHEDDRDRVERRIEAAVENCAEYEEEYR---VRNADGEVRWVVARGTVEADDD 411

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
                  G   +  D +  + + E +  QL ++ +    G  + + +G + + N    ++
Sbjct: 412 GNPKTFPGALTDITDRKQAELEAEKQRKQLETLFQVLPVGAVVADADGTLRTANDTAREI 471

Query: 485 FGYPVEDIL----RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE---KITLGSTKEEK 537
           +G  V D         F      +   V     T +  LD     E           + +
Sbjct: 472 WGGDVFDAASVDEYAKFDAVWADSGEPVDLDEWTMVRVLDGEAVTEPNIYEINAFDGDRR 531

Query: 538 LLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
           ++    +             +T+ DI+E ++        ++  E+ +     F    SH+
Sbjct: 532 VIMQHGMPVTDESGEVTRAVVTLTDITERRE-------FQRKLEESNERLEQFAYAASHD 584

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           ++ PL  +  +   +   R+G   +    E+ +Y       + ++++ LL  S++E+   
Sbjct: 585 LQEPLRMVTSYL-RLLENRYGDAIDGDGQEFLDYAVDGAERMSEMIDGLLAYSRVETRGD 643

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715
            L  EPV L+  + + I  +Q   +E    +  S    +P +  D   ++Q+  N+L NA
Sbjct: 644 PL--EPVDLEGVIDDVIDDLQFQIDETDAALELS---ALPTVEGDASQLRQVFQNLLDNA 698

Query: 716 IHFTPSGGQIIIST-THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           + +        +S       E+  + V D G+G+   + E+    F ++        EGT
Sbjct: 699 LTY-HDDDPPRVSVDAQRQGEQWEIAVSDAGIGIAPEDQERVFTVFDRLHGQD--EYEGT 755

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
           G+GL L + +V+ + G+  I S P +GT      P  +
Sbjct: 756 GIGLALCQRIVERHGGEIRIDSEPGEGTTFTFTLPAAE 793



 Score = 91.2 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 38/394 (9%), Positives = 93/394 (23%), Gaps = 27/394 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK-RQNTWYGKT 147
           +D  G + +I+    + I      + G    +         ++   D+ +       G+ 
Sbjct: 196 LDPDGTVLDINGTAMEYIDADLADVTGEPFWE--TPWWGRGDDARADVEEWTNRAAEGEY 253

Query: 148 TLWPIEGT---NLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
             +  + T        I+    P+   + +        I+  +R   + +   + L+   
Sbjct: 254 VEFETDLTRPSGERYTINGVFRPVTDDDGDV-----VSIIVSDRDVTERKERERYLEDAK 308

Query: 205 SHLHEIKKGHS-----SVEKEKYDIFSQQSP------PPHLRMKNKVSSLTEYYAHKDDV 253
           + L       +         E   +            P   R    + SL       D  
Sbjct: 309 AQLEAATDAGAVGTWEWHIPEDEFVAGPSFARTFGIDPEAARDGVPLESLLSSVHEDDRD 368

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE----SFEYLSHRNHP 309
               +        +   E+      +              ++               +  
Sbjct: 369 RVERRIEAAVENCAEYEEEYRVRNADGEVRWVVARGTVEADDDGNPKTFPGALTDITDRK 428

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
                 ++            P+   V    G L  AN +   +      D   +      
Sbjct: 429 QAELEAEKQRKQLETLFQVLPVGAVVADADGTLRTANDTAREIWGGDVFDAASVDEYAKF 488

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
                   +   +    + R           ++ I     +   +        ++  E  
Sbjct: 489 DAVWADSGEPVDLDEWTMVRVLDGEAVTEPNIYEINAFDGDRRVIMQHGMPVTDESGEVT 548

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
                  +  + R  +RK+E    +L     A S
Sbjct: 549 RAVVTLTDITERREFQRKLEESNERLEQFAYAAS 582


>gi|52143870|ref|YP_082958.1| sensor histidine kinase [Bacillus cereus E33L]
 gi|51977339|gb|AAU18889.1| sensor histidine kinase [Bacillus cereus E33L]
          Length = 591

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 80/371 (21%), Positives = 155/371 (41%), Gaps = 39/371 (10%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            ++ E  QL SIL + +DG+  +N+EG ++  N           E+       + L +  
Sbjct: 249 ALQQEKEQLASILSSMADGVITLNQEGEVVVINPPAEHFLQVWQEEK-----EIELSKKL 303

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
           PS +      ++  + +Q +E        +   + L   +            + D++E +
Sbjct: 304 PSELVELFHLVVESEQQQVVEINLQ----KGNYVVLMTPLYNQTKIRGAVAVLRDMTEER 359

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + +                + DF+A VSHE+RTP+  + G+SE I +            E
Sbjct: 360 RLE--------------KMRQDFIANVSHELRTPMVMLQGYSEAILDDIVQT--KEEINE 403

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           +   I      +  +VN+LLD++++ESG + LH   V +   V +     Q  A +K + 
Sbjct: 404 FVQIIYDESVRLGKLVNELLDLARMESGNVELHIGEVDIHPFVEKIGRKFQGIAKDKEVA 463

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +   F ++I +   D   ++Q+  N++ NAI  T +GG + +     +N  +I  V+D+G
Sbjct: 464 LTVDFKDSIEQYPFDADRMEQVLTNLIDNAIRHTNAGGHVTLVIDTKNNG-LIFEVQDSG 522

Query: 746 VGMTNYELEKAMKPFGQIPNSQQI-------RGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
            G+   ++      F +   ++          G        +AK +V  + GK  + S  
Sbjct: 523 AGIPEEDIPFLFDRFYKADKARTRGKKGGTGLGL------AIAKNIVQGHDGKIAVSSVV 576

Query: 799 AKGTLIEIIFP 809
            +GT   +  P
Sbjct: 577 GEGTTFSVYLP 587


>gi|302341832|ref|YP_003806361.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM 2075]
 gi|301638445|gb|ADK83767.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM 2075]
          Length = 1276

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 112/752 (14%), Positives = 239/752 (31%), Gaps = 48/752 (6%)

Query: 90   DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI---GDLLKRQNTWYGK 146
            D +G +  ++    +  G  A K +G +L DV  +        +      +         
Sbjct: 400  DVNGVVTRLNPVAQRLTGVPAHKAVGAKLDDVCKLQDGQSGERLTDAARQIIAGGLDIFG 459

Query: 147  TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
              L          P+ ++   +   +++  G     ++     + +     +R + ++  
Sbjct: 460  EHLILRSADGSRRPVAVSGSGLRDGDKKIVGV--VMVLRDVSREREAALALRRSEARYRS 517

Query: 207  LHEIKKGHSSV-------EKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
            L++      ++           YD       P   R+ N              + +  K 
Sbjct: 518  LYDSMHEGVALHQLVSDPGGRPYDFVVLDVNPAFERIMNLRRGQVVGMWGSQAMGRHAKT 577

Query: 260  PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL-QNNSKESFEYLSHRNHPSLSAYFDEG 318
                  + +   Q     ++  +  +              +          +        
Sbjct: 578  YFERFAQVARSGQPVSFDVDFKELGRSFNVSVFSPGEDLFATILQDITEAKNARDALARS 637

Query: 319  ENLTPETVDKCPIPFFVY--SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
            E    +     P    +     G +   N S L +  Y+  + +    G+S L       
Sbjct: 638  EEKFQKAFYSHPDSIVISNPHDGVMLEVNNSMLSMLGYQPEEIL----GVSALRIDLWAD 693

Query: 377  DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
              +  + +   R++  C+A       ++      + +            E      I  +
Sbjct: 694  PADRARFLATIRAEGRCLAME---SALRCKGGRIIPVELSGAMLYLGGQE--RLLTIARD 748

Query: 437  DVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRK 495
              +       +     +  +   A+ + IAI    +G+++  N A  +L GY   DIL  
Sbjct: 749  VSERAAAAEALLKSEERFQAAFMASPNSIAITRINDGVVIDVNHAFCRLLGYDRADILAD 808

Query: 496  PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555
               +       +     L  +   D     E      + E K + +      +   SC  
Sbjct: 809  RRLLLAAWQNHADRLTLLAAVKEQDEIAEFETAMRAKSGEIKNIIISARCIDIDGQSCAI 868

Query: 556  LTMHDISEWKQEKNKLSHAKKIAEKES--SHKSDFLARVSHEIRTPLTAIIGFSE-VIKN 612
              + D+++ K  + +    ++   +             ++HE    L AI+G+SE  +  
Sbjct: 869  SVLRDVTQMKLAQQERQRLEEQLRQSQKMEALGTLAGGIAHEFNNLLAAIMGYSELAMAR 928

Query: 613  QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
               G        +       +      +V  +L  S+    + +    P+     V EA+
Sbjct: 929  MTTGHACEDEVTQVLA----AAERAKGLVRQILTFSR----ESDYELRPLRALPVVLEAL 980

Query: 673  SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS-GGQIIISTTH 731
            +L++       + +R + A+    I+AD  ++ Q+ +N+ +NA H  P  GG I +S   
Sbjct: 981  ALLRASLPI-TVDLRQNLASEA-VIMADSTALHQVVMNLCTNAAHALPKDGGFIEVSLAD 1038

Query: 732  TSN-----EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
              +       + L V D G G+      +  +PF          GEGTGLGL +   +V 
Sbjct: 1039 EPDPAGGPGWLRLSVADDGAGVDPLIRGRIFEPFFTTKAP----GEGTGLGLSVVHGIVS 1094

Query: 787  ANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
               G+  +   P  G++  +  P  D     D
Sbjct: 1095 RLGGQINVTDRPGGGSVFGVRLPAVDAESLQD 1126



 Score = 83.9 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/391 (9%), Positives = 103/391 (26%), Gaps = 28/391 (7%)

Query: 221 KYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINL 280
              +   Q   P ++   ++    +         +  +  L  +       +     +  
Sbjct: 146 AAGVTRGQQILPTVQALLRLRPQAKEIYFLTGGCRQGRILLEAARRELRGFRGAKLVLLD 205

Query: 281 NQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHG 339
           +    +Q    L+     S + L                +   + +D  P P F ++  G
Sbjct: 206 HDAMSRQEM--LERLRGLSRDSLVIYGQWRREDGDRATADFFDQVLDASPAPVFGLFGMG 263

Query: 340 N-------LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS-DR 391
                   +F    +        ++  +         L A   +  +     +     D 
Sbjct: 264 RAPGLVGGMFEDGRALGRQVGGLALTLLAGKAPAGAPLIASTANRFSFDHRQLARWGIDP 323

Query: 392 TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV 451
             +   +RL     +  +      +         + M    +       R  +R +    
Sbjct: 324 DDLPPGSRLVNAPESFISRYRSLILGVAGFM-VMQTMLIVLLVAAYAKRRKTERALAKSE 382

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV---FLEQNTPSV 508
             L   L +  + +   +  G++   N    +L G P    +           +  +   
Sbjct: 383 QDLAITLNSIGEAVIAADVNGVVTRLNPVAQRLTGVPAHKAVGAKLDDVCKLQDGQSGER 442

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEW 564
           +     +I++  L    E   +  + +     + +    L           + + D+S  
Sbjct: 443 LTDAARQIIAGGLDIFGEH-LILRSADGSRRPVAVSGSGLRDGDKKIVGVVMVLRDVSRE 501

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
           ++          +A + S  +   L    HE
Sbjct: 502 REA--------ALALRRSEARYRSLYDSMHE 524


>gi|284052622|ref|ZP_06382832.1| two-component hybrid sensor and regulator [Arthrospira platensis
           str. Paraca]
          Length = 574

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 88/493 (17%), Positives = 188/493 (38%), Gaps = 31/493 (6%)

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
               S    +    +P  + +      V S  G +   N +   ++ Y+  + I+    +
Sbjct: 103 RKPESPERRDTIKRSPSFLQQMGCIVIVLSLEGKIVEWNHAAEEISGYRREEVIDRNYWM 162

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
             L   P+   +      +   + +  +      H +  +      + F      N   +
Sbjct: 163 LCL---PESVRDGIKFRYLEAIATQQPVHVH---HILLGSDRRQQQVHFKIVPWRNYCGD 216

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
            +           +     + E+E  +L  ++      IA+ + E   L+ +    +   
Sbjct: 217 ILGAIVTGEAVACSPDGSCQEELECERLQKLISYLPLPIAMFDPEMRYLAYSEGWIQHLK 276

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
             +  ++                  +   +    +    +       ++  L+     + 
Sbjct: 277 PQMYSLIGLSHYDVFPDCKNDWKLAHQKALRGEKVSALEDSWIR---EDGSLIYHGWTVG 333

Query: 547 K----LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
                        L +  +       N L   +  A      KS FLA++SHEIRTP++ 
Sbjct: 334 PWYRNSGEVGGIILVIIPL-------NNLVETRNAALDAVQFKSRFLAQMSHEIRTPMSG 386

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           ++G  E++      P    +  +Y   I R    +L ++N++LD+SK+E+G+ +L     
Sbjct: 387 VLGMVELLMQTHLTP----QQKDYTPTIYRRAKHLLTVINEILDLSKLEAGETHLESHDF 442

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPS 721
            L + +   + L+ + A +K++ +      NIPR +  D   ++Q+ +N+++NAI FT S
Sbjct: 443 DLQDCLETVVDLLSVKAEDKQLELIILLEPNIPRYLKGDGMRLQQVLINLVNNAIKFTQS 502

Query: 722 GGQIIISTTHT----SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
           G  III  T          +   + DTG+G+++    +  +PF    ++   +  GTGLG
Sbjct: 503 G-HIIIRLTPRLINQDQINIYFSIEDTGLGISDELQPQLFQPFSPASSATNRQYSGTGLG 561

Query: 778 LPLAKAMVDANMG 790
           L + + +V+   G
Sbjct: 562 LSICQHLVNLMGG 574



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/144 (11%), Positives = 49/144 (34%), Gaps = 1/144 (0%)

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476
           P          +            +    +    + +  S L+     + +++ EG I+ 
Sbjct: 80  PLVLTLSVSAMISMVASLTLVKWRKPESPERRDTIKRSPSFLQQMGCIVIVLSLEGKIVE 139

Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL-TEILSLDLRQTLEKITLGSTKE 535
            N A  ++ GY  E+++ + + +     +      +   E ++      +  I LGS + 
Sbjct: 140 WNHAAEEISGYRREEVIDRNYWMLCLPESVRDGIKFRYLEAIATQQPVHVHHILLGSDRR 199

Query: 536 EKLLSLRIIIKKLPFSSCYSLTMH 559
           ++ +  +I+  +          + 
Sbjct: 200 QQQVHFKIVPWRNYCGDILGAIVT 223



 Score = 45.8 bits (107), Expect = 0.029,   Method: Composition-based stats.
 Identities = 19/190 (10%), Positives = 45/190 (23%), Gaps = 12/190 (6%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG--DLLKRQNTWYGKTTL 149
            G + E +    +  G    ++I      +     +         + +  Q   +    L
Sbjct: 134 EGKIVEWNHAAEEISGYRREEVIDRNYWMLCLPESVRDGIKFRYLEAIATQQPVHVHHIL 193

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFR--GFGIVHVNRVDNDPRALGKRLDKKFSHL 207
              +       +    +P  +   +  G    G  +              +RL K  S+L
Sbjct: 194 LGSDRRQQQ--VHFKIVPWRNYCGDILGAIVTGEAVACSPDGSCQEELECERLQKLISYL 251

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKN--KVSSLTEYYAHKDDVLKTEKYPLLTSE 265
                   ++   +    +               +  L+ Y    D     +        
Sbjct: 252 PL----PIAMFDPEMRYLAYSEGWIQHLKPQMYSLIGLSHYDVFPDCKNDWKLAHQKALR 307

Query: 266 ESSLPEQEDF 275
              +   ED 
Sbjct: 308 GEKVSALEDS 317


>gi|229029256|ref|ZP_04185347.1| hypothetical protein bcere0028_13530 [Bacillus cereus AH1271]
 gi|228732069|gb|EEL82960.1| hypothetical protein bcere0028_13530 [Bacillus cereus AH1271]
          Length = 591

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 81/371 (21%), Positives = 154/371 (41%), Gaps = 39/371 (10%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            ++ E  QL SIL + +DG+  +N+EG ++  N           E+       V L +  
Sbjct: 249 ALQQEKEQLASILSSMADGVITLNQEGEVVVINPPAEHFLQVWQEEK-----EVELSKKL 303

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
           PS +      ++  + +Q +E        +   + L   +            + D++E +
Sbjct: 304 PSELVELFHLVVESEQQQVVEINLQ----KGNYVVLMTPLYNQTKIRGAVAVLRDMTEER 359

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + +                + DF+A VSHE+RTP+  + G+SE I +            E
Sbjct: 360 RLE--------------KMRQDFIANVSHELRTPMVMLQGYSEAILDDIVQT--KEEINE 403

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           +   I      +  +VN+LLD++++ESG + LH   V +   V +     Q  A +K ++
Sbjct: 404 FVQIIYDESVRLGKLVNELLDLARMESGNVELHIGEVDIHPFVEKIGRKFQGIAKDKEVV 463

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +   F N I +   D   ++Q+  N++ NAI  T +GG + +     +N  +   V+D+G
Sbjct: 464 LTVDFQNPIEQYPFDADRMEQVLTNLIDNAIRHTNAGGHVTLVIDTKNNG-LTFEVQDSG 522

Query: 746 VGMTNYELEKAMKPFGQIPNSQQI-------RGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
            G+   ++      F +   ++          G        +AK +V  + GK  + S  
Sbjct: 523 AGIPEEDIPFLFDRFYKADKARTRGKKGGTGLGL------AIAKNIVQGHDGKIAVSSVV 576

Query: 799 AKGTLIEIIFP 809
            +GT   +  P
Sbjct: 577 GEGTTFSVYLP 587


>gi|262275269|ref|ZP_06053079.1| hypothetical two-component sensor [Grimontia hollisae CIP 101886]
 gi|262220514|gb|EEY71829.1| hypothetical two-component sensor [Grimontia hollisae CIP 101886]
          Length = 725

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 77/262 (29%), Positives = 131/262 (50%), Gaps = 10/262 (3%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           +++ ++   +L  AK  AE+ +  KS+FLA +SHEIRTP+  IIG + ++K        +
Sbjct: 173 VAKMREYNAELKSAKMQAEQANQKKSEFLANMSHEIRTPMNGIIGMASLLKGTPL----D 228

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
               E+   ++ S   +LDI+ND+LD SKIE+GK+ L    ++L E   +   L +L   
Sbjct: 229 EEQREFIEMLETSSLSLLDIINDILDFSKIEAGKLELDSVELNLFELCKDIEHLFRLRTK 288

Query: 681 EKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT----SNE 735
           EK +        N+ P ++ D   ++Q+ +N++ NA+ FT SG ++ +S         N 
Sbjct: 289 EKGLEFECGLDQNLTPLLVGDAPRLRQVMINLVGNAVKFTQSG-KVSVSIRQVAEAGDNI 347

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            V   V DTG+G+   +L+   + F Q   S      GTGLGL ++  +V+   G+  + 
Sbjct: 348 TVTFEVEDTGIGIPADKLKTVFEKFEQADGSMSRNFGGTGLGLAISSQIVELMGGEIEVE 407

Query: 796 STPAKGTLIEIIFPLYDTSHPH 817
           S   +G+             P 
Sbjct: 408 SREGEGSRFFFTVTFERAQMPE 429


>gi|158422334|ref|YP_001523626.1| ATP-binding ATPase [Azorhizobium caulinodans ORS 571]
 gi|158329223|dbj|BAF86708.1| ATP-binding ATPase [Azorhizobium caulinodans ORS 571]
          Length = 864

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 106/694 (15%), Positives = 231/694 (33%), Gaps = 46/694 (6%)

Query: 137 LKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRAL 196
           ++      G       EGT   +     A  +        G  G  ++            
Sbjct: 198 VEAVAALEGPLAALVREGTPFRILTRDRAAALLQIEGR--GVAGLRVIAAGEPAAGEGVG 255

Query: 197 GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256
                +    + +              + +  +          V+      A + ++L  
Sbjct: 256 ASTQAQALRAIFDGAPVPMWWRSPDGTLEAVNAAFEKA-----VACGAPEGAERSELLDQ 310

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
                  +             +      +             +   +   +  +     +
Sbjct: 311 AAREAAEAAHRQGQPYVARVRVVAGGKRRLLDVVEAAGPYGAAGVAIDVTDQEAARVEHE 370

Query: 317 EGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
                   T+D+      ++     + + N ++  L   +                  + 
Sbjct: 371 RSLAAHRRTLDQLNTAVVIFGPDDRVDFHNTAYERLFDLEPA------------FLDQRP 418

Query: 376 SDNNAIKPVMLYRSDRTCIAASA---RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
           S +  ++ +   R         A   +L       E       +P  +  +        G
Sbjct: 419 SQSEVLERLRAARKVPEQADFRAWREQLRESYRGLEPMNDWWHLPGGQMLRVVAAPTAEG 478

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSI----LEATSDGIAIINREGIILSTNRAVSKLFGYP 488
                 D       +E     L  I    L+  ++ +A+   +G +   N+A  +L+   
Sbjct: 479 GVTFLFDDMSEHMALEGRYNSLIRIQGETLDGLAEAVAVFGSDGRLRLYNQAFLRLWSLS 538

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            + +  +P    +                S    +    IT    +E + L L    K++
Sbjct: 539 AQALGERPHIDAVAAMCRPKHGE------SGAWARIRNVITALDHREGETLRLETADKRV 592

Query: 549 PF-------SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
                         +T  D+++  + +  L    +  E     K+ F+  VS+ +RTPL 
Sbjct: 593 LDGAAQPLPDGGTMVTFRDVTDSVKVERALIERNEALEAADVLKNAFVGHVSYHLRTPLN 652

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           ++IG++ ++     G + NPR  E+  ++++S + + ++++D+LD++ I++G M L  + 
Sbjct: 653 SLIGYAHMLAEGVAGEM-NPRQREFMTHVNQSADALRELIDDILDLATIDAGAMALDLDA 711

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           V +   +  A   V+       + +   ++      +AD R V+QI  N+LSNAI   P 
Sbjct: 712 VDVTATLEAAADSVRDLLESAGVRLELEWSGEPGTFIADGRRVRQILFNLLSNAIAVEPP 771

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           G  + +      +  ++L VRD G G+    +E+  + F     S   +  G GLGL + 
Sbjct: 772 GSAVTLRADRLRDA-LVLTVRDHGPGIDPATVEQLFQRFE----SAGGKRRGVGLGLSIV 826

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
           ++ ++ + G   +   P  GTL   +FPL    H
Sbjct: 827 RSFMELHGGTVTLKPAPGGGTLAICVFPLDQRRH 860



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/424 (7%), Positives = 92/424 (21%), Gaps = 34/424 (8%)

Query: 178 FRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF--SQQSPPPHLR 235
             G   V      +          +      +  +  ++     + ++    +       
Sbjct: 116 AAGIYAVRARTRRSRAERHLSERAQALRADVQALRALAAGSARGFILWRDGGRLESFGDA 175

Query: 236 MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN 295
                 +   +      V       +   E        +     +    +      ++  
Sbjct: 176 ASAFSDAADAHALANGLVAWVGVEAVAALEGPLAALVREGTPFRILTRDRAAALLQIEGR 235

Query: 296 SKESFEYLSHRNHPSLSAY-FDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTK 353
                  ++     +                 D  P+P  +    G L   N +F     
Sbjct: 236 GVAGLRVIAAGEPAAGEGVGASTQAQALRAIFDGAPVPMWWRSPDGTLEAVNAAFEKAVA 295

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
             + +  E +  L             A +             A  R+            +
Sbjct: 296 CGAPEGAERSELLD----------QAAREAAEAAHRQGQPYVARVRVVA----GGKRRLL 341

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
             +      +        G+  +  D    + + E  +      L+  +  + I   +  
Sbjct: 342 DVV------EAAGPYGAAGVAIDVTDQEAARVEHERSLAAHRRTLDQLNTAVVIFGPDDR 395

Query: 474 ILSTNRAVSKLFGYPVEDILRKP----FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
           +   N A  +LF      + ++P        L                            
Sbjct: 396 VDFHNTAYERLFDLEPAFLDQRPSQSEVLERLRAARKVPEQADFRAWREQLRESYRGLEP 455

Query: 530 ---LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
                     ++L +             +    D+SE    + + +   +I  +     +
Sbjct: 456 MNDWWHLPGGQMLRVVAAPT---AEGGVTFLFDDMSEHMALEGRYNSLIRIQGETLDGLA 512

Query: 587 DFLA 590
           + +A
Sbjct: 513 EAVA 516


>gi|91775636|ref|YP_545392.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacillus flagellatus KT]
 gi|91709623|gb|ABE49551.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacillus flagellatus KT]
          Length = 632

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 88/544 (16%), Positives = 203/544 (37%), Gaps = 55/544 (10%)

Query: 281 NQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC-----PIPFFV 335
            ++++      L ++     +  + +     +            T+              
Sbjct: 123 PKFSRVAGSQRLYSSVVNVRKLNAEKKRLFQAHALLSMRESESRTLTHIVSMTDNSVVIA 182

Query: 336 YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIA 395
            + G + + N +++  + Y   + +    G         L D +      + R      +
Sbjct: 183 NALGYVEWVNDAYVRRSGYLPEEVVGRYLG--------DLMDGDEETVEQIRRQLDAKQS 234

Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
             A L     +  N   +        +   +      +  +  + ++ +         + 
Sbjct: 235 YQAELLRTAKDGSNY-WVDLDIEPLFDGNGQVFNYIAVARDITEKKMAQETSSRLHGIMQ 293

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           S  E + DG+   N++G++ + N A   + G   E +          + + S     L  
Sbjct: 294 STFELSPDGLVTFNKKGMLSTFNPAFLNMTGLKPEQL---------REISQSEFIRLLKS 344

Query: 516 ILSLDLRQTLEK-----ITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEK 568
           +   D     ++     +   +  +  ++   +     P +          DI++    +
Sbjct: 345 LCQDDQGAVSQRLPDAVVMRMTKPKLTVIKHSVREAHDPENRFVGTIHYFRDITQ----E 400

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
           ++L             K +FL+  +HE+RTP+++I GF+E++  + F P    +  +   
Sbjct: 401 SELH----------RMKGEFLSMAAHELRTPMSSIHGFTELLLKREFTP---EQQKDMLA 447

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGK-MNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
            + R    +  ++ND+LD++KIE+ K M+   +P  L + V  A+       + +   I+
Sbjct: 448 TVHRQSVRLTKLINDMLDLAKIEARKGMSFDIKPYRLTDIVDTALKEF--LVSGEGRAIK 505

Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN---EEVILRVRDT 744
             F N+  ++ AD   + Q  +N+LSNA  ++    +I +            V + V D 
Sbjct: 506 FHFNNHALKVSADFDKLIQALVNVLSNAHKYSDPSTEIHLYIKEKQQYQHTYVGIAVEDY 565

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+GM+   ++   + F +   S      GTGLGL L K +++ + G   + S   +G+++
Sbjct: 566 GIGMSKEHMDHLFERFYRADVSGS--IPGTGLGLCLVKEIMEIHGGWVDVSSVYGEGSVV 623

Query: 805 EIIF 808
            +  
Sbjct: 624 TLWL 627



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/236 (10%), Positives = 64/236 (27%), Gaps = 5/236 (2%)

Query: 93  GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPI 152
           GY++ +++   +  G    +++G  L D+      +    I   L  + ++  +      
Sbjct: 186 GYVEWVNDAYVRRSGYLPEEVVGRYLGDL-MDGDEETVEQIRRQLDAKQSYQAELLRTAK 244

Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212
           +G+N    +DL   P++  N +   F    +          +    RL        E+  
Sbjct: 245 DGSNY--WVDLDIEPLFDGNGQV--FNYIAVARDITEKKMAQETSSRLHGIMQSTFELSP 300

Query: 213 GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ 272
                  +K  + +      ++             +    +LK+       +    LP+ 
Sbjct: 301 DGLVTFNKKGMLSTFNPAFLNMTGLKPEQLREISQSEFIRLLKSLCQDDQGAVSQRLPDA 360

Query: 273 EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
                        K       +        + +    +  +     +         
Sbjct: 361 VVMRMTKPKLTVIKHSVREAHDPENRFVGTIHYFRDITQESELHRMKGEFLSMAAH 416


>gi|206969280|ref|ZP_03230235.1| sporulation kinase A [Bacillus cereus AH1134]
 gi|206736321|gb|EDZ53479.1| sporulation kinase A [Bacillus cereus AH1134]
          Length = 510

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 96/523 (18%), Positives = 195/523 (37%), Gaps = 39/523 (7%)

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDD 359
            + +                +     +  P     +   G + + NPS   +  Y S++ 
Sbjct: 13  RHPNISRRLRNHIQDRSLTEMYASLFEHNPDSIISLNLEGVILHINPSAERILGYTSLE- 71

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
           +E     S L         +  + V+    +         + +I       L +      
Sbjct: 72  LEQKNITSIL-------GAHISEQVLQNIKNTEADNQQEYILSIYHKNGFLLDVVTKLVP 124

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
              Q         ++P +   RI +  ++    +L +++ +    +   + EG  L  N 
Sbjct: 125 IFVQNRLTGVYAIMKPLEKSERI-ENMLKESEKRLRTLVNSMPAFVIFKDHEGRWLEAND 183

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMN----HYLTEILSLDLRQTLEKITLGSTKE 535
                F +       K  +  ++ N            + E+     RQ L        ++
Sbjct: 184 YALSCFNFHHVPYHGKKDSELIQYNEAYREAFLHCEEVDELAWQ-QRQILHGEEFIIHRD 242

Query: 536 EKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
           +  L L I    L           +   D++E K+ +  L  ++K+A           A 
Sbjct: 243 DFDLILSISKVPLYHPDGSRKGLIVMGRDVTELKETEKLLRKSEKLAVV-----GQLTAG 297

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           ++HEIR PLT++ GF  ++      P  N     Y + +    + +  I +  + +SK +
Sbjct: 298 IAHEIRNPLTSLKGFLTLLL-----PEINEEQKWYIDVMLSEISQMESITSQFMAMSKPQ 352

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
                L  +  ++   + E ++ +   A    + I     + +  I  D   +KQ+ +NI
Sbjct: 353 ----VLSIQTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYVYDIQCDGNQLKQVFINI 408

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           L NAI   P+GG I I T    +  +++R+ D G G+    + +  +PF        ++ 
Sbjct: 409 LKNAIEAMPNGGNIFIQTKPLEDNFILIRIIDEGCGIPEDRISRLGEPFY------SLKE 462

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           +GTGLGL +   +++ + GK +I S   +GT+++I  PL  + 
Sbjct: 463 KGTGLGLMMCYKIIEEHHGKLHISSELNEGTIVDIELPLSSSH 505


>gi|120435983|ref|YP_861669.1| two-component system sensor histidine kinase [Gramella forsetii
           KT0803]
 gi|117578133|emb|CAL66602.1| two-component system sensor histidine kinase [Gramella forsetii
           KT0803]
          Length = 660

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 93/522 (17%), Positives = 197/522 (37%), Gaps = 26/522 (4%)

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP--IPFFVYSHGNLFYANPSFLLLT 352
            S  +                +E E    E +      I         +  AN +   + 
Sbjct: 158 LSGVAVMAQEVTPKAIFHKKIEESEYKYRELIHSSNSLIAILKGEDMIVEIANDAIKKVW 217

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE-NSL 411
              S  D+E       L   P++ +                 +A  +L     + E    
Sbjct: 218 GKGS--DVEGKPLFEVL---PEMVEQGMPAIFKNVLDSGKAYSAQEKLINHLQDDEMRPG 272

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471
              FI   + N   E      I  +  +  +  +K++    +L  ++      + + N +
Sbjct: 273 YFDFIYQPQKNIRGEIDGVAVIANDVTNQGLLNQKIKESEKELRDLVNFMPLKVCMTNAK 332

Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
           G+ +  N +     G  +E++L K +   +  +    +     + L       ++     
Sbjct: 333 GVPVFYNNSWRNYTGKSIEELLSKSWMSLIHPDNREKVEMVARKSLETG--SDIDLEFKI 390

Query: 532 STKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
                +          +           +I+ W     ++   K    +    K  FL  
Sbjct: 391 FDANGQAKWHLNRATAIRNEEG------EITSWITSSTEIQKLKDEENR----KEGFLKL 440

Query: 592 VSHEIRTPLTAIIGFSEVIKN---QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
           VSHE++TP+T+I G+ +++     +     G      Y N I+     ++ +++++LD+S
Sbjct: 441 VSHELKTPVTSIKGYVQLLLTMLPEANQENGELPVKPYLNRIETQVERLIRLISEMLDLS 500

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIA 708
           +IE  +M L  E  SL+  V E I  +     E +I ++     +   ++AD   + Q+ 
Sbjct: 501 RIEHNEMELKKEKFSLNHHVEEIIEDISYSNKEVQIELKHHCECD---VIADKDRIGQVI 557

Query: 709 LNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
           +N ++NA+ ++P   ++ ++  + +  EV + V+D G+G+   E+ K  K F ++  ++ 
Sbjct: 558 INFITNALKYSPEDNRVEVTVYNKTENEVAVSVKDFGIGIEKKEINKIFKRFYRVSGNRD 617

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
               G G+GL L+  +V  + GK  + S    G+    + PL
Sbjct: 618 ETYAGFGIGLYLSNEIVKRHNGKIVVNSEFGIGSEFIFVLPL 659


>gi|255526346|ref|ZP_05393260.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           carboxidivorans P7]
 gi|255509923|gb|EET86249.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           carboxidivorans P7]
          Length = 441

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 85/376 (22%), Positives = 166/376 (44%), Gaps = 23/376 (6%)

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           I++    G+ I++ +  I+  N A+ K+     + ++ K F     +     +N  +  I
Sbjct: 34  IIDNVPIGVIILDSKFNIILWNSALEKMSSIYNKTVIGKNFFQIFPKVFTEDINIKIKNI 93

Query: 517 LSLDLRQTLEKITLGSTKEEKL-----LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571
            S      L+ + + +    K      + +  +  K   S+   LT  D +  +  + +L
Sbjct: 94  TSTKETIILDNLLVNNFFSSKHYKYCNIKISALENKSSISNGIMLTFEDCTVLQNIRYEL 153

Query: 572 SH-----------------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
           +                       ++    ++DF   +SH++RTPL  I+   +++K+  
Sbjct: 154 NKECSVVKTLIKKIKEDKLHLSKMKEIDKLRTDFFTNISHDLRTPLNIILSALQLMKSFN 213

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                  +  +Y   I ++   +L ++N+L+DI+KI+SG   +     ++   V +    
Sbjct: 214 NLNCNEEKSFKYFKSIKQNSLRLLKLINNLIDITKIDSGYFEIRTGNYNIVNIVEDITLS 273

Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
           V  Y   K I +          +  D   V++I LN++SNAI FT  GG I I+     +
Sbjct: 274 VAQYVENKSITLTFDTNTEEKFMACDPDKVERIMLNLISNAIKFTNPGGHIFINM-FDED 332

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
           + +++ V DTG+G+   +L+   + F Q   +      G+G+GL L K++V+ + GK  +
Sbjct: 333 DYIVICVEDTGIGIPEEDLDIIFERFRQSNRASARNYTGSGIGLSLVKSLVEMHGGKISV 392

Query: 795 FSTPAKGTLIEIIFPL 810
            ST  KGT   I  P+
Sbjct: 393 RSTYGKGTKFVIKLPV 408


>gi|170747176|ref|YP_001753436.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium radiotolerans JCM 2831]
 gi|170653698|gb|ACB22753.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium radiotolerans JCM 2831]
          Length = 862

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 117/632 (18%), Positives = 234/632 (37%), Gaps = 19/632 (3%)

Query: 184 VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL 243
             +  +        + L      L  I +      ++    +   +    +  +++ ++L
Sbjct: 198 CEIADLRAALDETRRGLSALSGLLDAIPQPVWRRNRDGGLSWVNAAYVAAVEAESREAAL 257

Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303
                  D   +        +  + L       +  +    +          +      +
Sbjct: 258 DAGLELFDRPARETIAREEAARFAGLTRSVPRLSAIVAGNRRMLDVFETGLETGRVGIAI 317

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEI 362
                 S+ A      N    T+D+ P    ++     L + N ++  L        ++ 
Sbjct: 318 DVSELESVRADLQRQMNANVRTLDQLPTAVAMFDVSQRLIFHNAAYRQLWDL-DQAFLDS 376

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
                 +LD  +                    A  A      W       +      +  
Sbjct: 377 RPSDGEILDHLRAERKLEEHADFRGWKQGVLSAYRAAEANQTW-----WYLPDGRTLRVV 431

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS-ILEATSDGIAIINREGIILSTNRAV 481
             P          +DV  R+N       + +L +  L+  ++ +A+   +G +   NRA 
Sbjct: 432 ADPNPQGGLTYLFDDVSDRLNAESRYNALRRLQAETLDTLAEPVAVFGADGRLSLANRAF 491

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE----KITLGSTKEEK 537
             ++    E +  +P    +     ++       +   D    LE    +       +  
Sbjct: 492 FTVWRLDPEMVEERPHVDAVIAACRALAPAEEPWLDIRDAVVGLEARTARTCRLEVVDGT 551

Query: 538 LLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
           +L                LT+ D++     +  L+      EK +  +  F+  VS+E+R
Sbjct: 552 VLDCAAQPLP---EGATLLTLIDVTASVNVERALTEKNDALEKAAQLRDTFVHHVSYELR 608

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           +PLT IIGF++++ ++  G L N R  EYA++I RS   +L I+ND+LD++ I++G + L
Sbjct: 609 SPLTNIIGFTQLLGDETVGAL-NERQREYADHIMRSSAALLVIINDILDLASIDAGSLEL 667

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
             E V +   V  A+  ++    E  I +      +I  + AD + V+QI  N+LSNA+ 
Sbjct: 668 QREEVDVQATVEAAVRGIEDRLAESHITLALDVPEDIGSVHADGKRVRQILFNLLSNAVG 727

Query: 718 FTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
           F+ +G ++ +    T+  E++L VRD G GM     +     F    ++   R  G GLG
Sbjct: 728 FSDAGQRVEVQARRTAQ-ELLLSVRDHGRGMPPEIADSVFNRFE--SHTLGTRHRGVGLG 784

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           L + ++ V+ + G+  + + P  GT +   FP
Sbjct: 785 LSIVRSFVELHGGRVLLETAPGSGTRVTCTFP 816



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 38/386 (9%), Positives = 95/386 (24%), Gaps = 27/386 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            W  +  G L  ++      +   + +       ++ D    +             T   
Sbjct: 228 VWRRNRDGGLSWVNAAYVAAVEAESREAALDAGLELFDRPARETIAREEAARFAGLTRSV 287

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
                 + G    + +    L               GI          RA  +R      
Sbjct: 288 PRLSAIVAGNRRMLDVFETGL----ETGRV------GIAIDVSELESVRADLQRQMNANV 337

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
              +      ++      +    +     ++ +   +  +      ++L   +      E
Sbjct: 338 RTLDQLPTAVAMFDVSQRLIFHNAAY--RQLWDLDQAFLDSRPSDGEILDHLRAERKLEE 395

Query: 266 ESSL-----PEQEDFHTINLNQYTKKQYFGTLQNNSKESFE-------YLSHRNHPSLSA 313
            +            +     NQ       G       +          +    +  +  +
Sbjct: 396 HADFRGWKQGVLSAYRAAEANQTWWYLPDGRTLRVVADPNPQGGLTYLFDDVSDRLNAES 455

Query: 314 YFDEGENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
            ++    L  ET+D    P  V+ + G L  AN +F  + +    + +E    +  ++ A
Sbjct: 456 RYNALRRLQAETLDTLAEPVAVFGADGRLSLANRAFFTVWRL-DPEMVEERPHVDAVIAA 514

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
            +         + +  +     A +AR   ++      L     P  +       +    
Sbjct: 515 CRALAPAEEPWLDIRDAVVGLEARTARTCRLEVVDGTVLDCAAQPLPEGATLLTLIDVTA 574

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSIL 458
               +         +E    QL    
Sbjct: 575 SVNVERALTEKNDALEK-AAQLRDTF 599


>gi|284166174|ref|YP_003404453.1| multi-sensor signal transduction histidine kinase [Haloterrigena
           turkmenica DSM 5511]
 gi|284015829|gb|ADB61780.1| multi-sensor signal transduction histidine kinase [Haloterrigena
           turkmenica DSM 5511]
          Length = 642

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 89/639 (13%), Positives = 211/639 (33%), Gaps = 43/639 (6%)

Query: 182 GIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS 241
            +V V+ V          L  +      ++ G    E                 +  +  
Sbjct: 41  AVVAVSDVLETEYVELLELLPEGDEFF-LRDGVGWHEGLVGSTTVPADTNSQAGITLRTE 99

Query: 242 SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301
           +       + +   +E   L     +S                        +   +++  
Sbjct: 100 APIVVDDVQSEDRLSEPALLTDHGITSGISVIVGSVDEPWGVLGTYATEPREFTDRDATF 159

Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDI 360
             S  N    +   +       E   +    FF      N  Y N     L        +
Sbjct: 160 LRSVANVLGSALENERTRRELEEIYGRISDAFFALDGDWNFTYLNERAHELINPDGKTLV 219

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
                       P+               D+  ++                 +   P E 
Sbjct: 220 GKRVWDEF----PEAMGQQFKAEYERAMYDQETVSFEEY---YPDPLGRWFEVRAYPSET 272

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNR 479
                     +    +  + +  +R++E+      ++L+ ++D + +I+   G  L  N 
Sbjct: 273 --------GLSVYFRDITERKERQRELEL----FRTLLDHSNDSVLVIDPGSGRFLDANE 320

Query: 480 AVSKLFGYPVEDILRKPFTVFLE-QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
              +  GY  E++L           +  +  + ++ ++          +      K+   
Sbjct: 321 TACRRLGYDREELLDLTVPEMDHVFDDVADWHTHVEDVKDEGSMTITGEHVR---KDGTT 377

Query: 539 LSLRIIIKKLP-FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
               + +  +            DI+E ++ +  L       E+ +     F    SH+++
Sbjct: 378 YPAEVNVAHVELDREYMIAIARDITEHRERERAL-------EESNERLEQFAYAASHDLQ 430

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
            PL  +  + + +  +R+    +    E+ +Y       + ++++ LL  S++E+     
Sbjct: 431 EPLRMVSSYLQ-LLERRYADEFDEDGEEFLDYAVDGAERMREMIDGLLAYSRVETRGDP- 488

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
            FEPV LD  + + +  + L   E    + T     +PR+  D   ++Q+  N+L+NA+ 
Sbjct: 489 -FEPVDLDCLLEDVLDDLSLQLEETDAEVETE---PLPRVRGDASQLRQVFQNLLANALE 544

Query: 718 FT-PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
           ++ P   ++ +           + V D G+G+   + ++    F ++ +  +   +GTG+
Sbjct: 545 YSGPEPPRVHLEAAQREGAMWEVSVVDEGIGIDPEDQDRVFDVFQRLHS--REEYDGTGI 602

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
           GL L + +V+ + G+ ++ S P +G+   +  P  D S 
Sbjct: 603 GLALCERIVERHDGEIWVESEPGEGSTFSVTLPAADESA 641



 Score = 47.3 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 30/322 (9%), Positives = 83/322 (25%), Gaps = 16/322 (4%)

Query: 93  GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH--IDPNNHIGDLLKRQNTWYGKTTLW 150
           G   + +E   + +G    +++ + + ++  +     D + H+ D+    +         
Sbjct: 313 GRFLDANETACRRLGYDREELLDLTVPEMDHVFDDVADWHTHVEDVKDEGSMTITGE-HV 371

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
             +GT     +++A + +   +RE+       I      +       +RL++        
Sbjct: 372 RKDGTTYPAEVNVAHVEL---DREYMIAIARDITEHRERERALEESNERLEQFAYAASHD 428

Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270
            +    +      +  ++          +        A +   +          E    P
Sbjct: 429 LQEPLRMVSSYLQLLERRYADEFDEDGEEFLDYAVDGAERMREMIDGLLAYSRVETRGDP 488

Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330
            +       L            + +++   E L      +          L        P
Sbjct: 489 FEPVDLDCLLEDVLDDLSLQLEETDAEVETEPLPRVRGDASQLRQVFQNLLANALEYSGP 548

Query: 331 IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390
            P  V+       A      + +   VD+                   ++ +       D
Sbjct: 549 EPPRVH-----LEAAQREGAMWEVSVVDEGIGIDPEDQDRVFDVFQRLHSREEY-----D 598

Query: 391 RTCIAASARLHTIQWNRENSLA 412
            T I  +     ++ +      
Sbjct: 599 GTGIGLALCERIVERHDGEIWV 620



 Score = 44.6 bits (104), Expect = 0.061,   Method: Composition-based stats.
 Identities = 31/380 (8%), Positives = 97/380 (25%), Gaps = 38/380 (10%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMR-LCDVSDILHIDPNNHIGDLLKRQNTWYG 145
           + +D       ++E   + I      ++G R   +  + +           +  Q T   
Sbjct: 192 FALDGDWNFTYLNERAHELINPDGKTLVGKRVWDEFPEAMGQQFKAEYERAMYDQETVSF 251

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +       G       ++ A P  +           G+    R   + +   + L+   +
Sbjct: 252 EEYYPDPLGR----WFEVRAYPSET-----------GLSVYFRDITERKERQRELELFRT 296

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK----DDVLKTEKYPL 261
            L         ++                   ++   L           DDV     +  
Sbjct: 297 LLDHSNDSVLVIDPGSGRFLDANETACRRLGYDREELLDLTVPEMDHVFDDVADWHTHVE 356

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
              +E S+    +    +   Y  +     ++    +    ++     +     +     
Sbjct: 357 DVKDEGSMTITGEHVRKDGTTYPAEVNVAHVE---LDREYMIAIARDITEHRERERALEE 413

Query: 322 TPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
           + E +++       +          S+L L + +  D+ +  G          +     +
Sbjct: 414 SNERLEQFAYA-ASHDLQEPLRMVSSYLQLLERRYADEFDEDG---EEFLDYAVDGAERM 469

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
           + +         I        ++   +    +      +      ++     + E     
Sbjct: 470 REM---------IDGLLAYSRVETRGDPFEPVDLDCLLEDVLDDLSLQLEETDAEVETEP 520

Query: 442 INKRKMEIEVMQLCSILEAT 461
           + +  +  +  QL  + +  
Sbjct: 521 LPR--VRGDASQLRQVFQNL 538


>gi|239997215|ref|ZP_04717739.1| GAF sensor hybrid histidine kinase [Alteromonas macleodii ATCC
           27126]
          Length = 702

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 93/390 (23%), Positives = 166/390 (42%), Gaps = 17/390 (4%)

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
            +   +    +    K  +E     L  +      G   +N +   L  + A+ ++    
Sbjct: 151 NELERQQAISNLNAQKAILEERNSLLHQVTNLAGVGTWELNIDTGALIWSGALKRMLHVH 210

Query: 489 VEDILRKP--FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
            E +++        ++++  +       +++      + E      T   +   L+    
Sbjct: 211 GEKVVKPEDVIKFVVDEDQRNKYVAQFNQMIKTGEDFSYELEV--RTDAGETRWLQSRAH 268

Query: 547 KLPFSSCYSLTM---HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
            +  +      +    DI++   +K  L     +AE     +S+FLA +SHEIRTP+  +
Sbjct: 269 PVMENDRCVKVIGATVDITQLHMDKAMLQQKTDMAESALKARSEFLANMSHEIRTPIHGV 328

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
            G  E + +       N   +E+A    +S + +L+IVND+LD SKI+SG M+    P +
Sbjct: 329 QGMLEALISSSL----NSTQLEHATIAMKSADSLLNIVNDILDFSKIDSGNMSFEESPTN 384

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSG 722
           L + + E + +    A+EK I +  S         +AD   + QI +N+L+NAI FT  G
Sbjct: 385 LADTIEEQVPMFTRLAHEKGIELSVSTKGVEGKTFIADKLRIGQILINLLNNAIKFTKEG 444

Query: 723 GQIIISTTHTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
            ++ + T  T        V L V D+G+G++  + +    PF Q  NS Q R  GTGLGL
Sbjct: 445 -KVTVETKSTRYGKGRFRVKLIVTDSGIGISEQQQKLIFSPFVQAENSTQRRYGGTGLGL 503

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            +   +V    GK  + S    G    +  
Sbjct: 504 SIVSQIVKHYGGKIEVCSDLGVGARFIVTL 533


>gi|150008173|ref|YP_001302916.1| putative two-component system sensor histidine kinase
           [Parabacteroides distasonis ATCC 8503]
 gi|149936597|gb|ABR43294.1| putative two-component system sensor histidine kinase
           [Parabacteroides distasonis ATCC 8503]
          Length = 522

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 100/530 (18%), Positives = 202/530 (38%), Gaps = 59/530 (11%)

Query: 318 GENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
            E        K P+   VY   G L   N +   L      D + I      L + P   
Sbjct: 9   EEMSFNALFQKLPVGIEVYDERGQLVDLNRTDENLFAISRKDIMGIN-----LFENPNFP 63

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQ---------WNRENSLAMTFIPFEKANQFPEN 427
           ++       L + +      +     IQ              +L ++        +  + 
Sbjct: 64  EDKI---ARLKQGEMVVFDCNYEFDNIQTNEYYNIDPKKEGINLRLSIKCVPLKGEAEDI 120

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA---------IINREGIILSTN 478
                +  ++ +      K+E    +L +++  +   +           I+ +  +L  N
Sbjct: 121 CGYVLMFTDETEEYQKSEKVEELFTKLKTVMRCSDSLLWEYDVKTDKMHIDLDLRVLG-N 179

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS-TKEEK 537
           ++  +          +K F   +       +   +     +   +  E         E +
Sbjct: 180 KSRLRASNLT----TKKDFCEIVHPEDRERVL--VQGFEKIVTGEIGEYSIQYRQLFEGQ 233

Query: 538 LLSLRIIIKKLPFSSC-----YSLTMHDISEWKQEKNKLSHAKKI----------AEKES 582
            + +R       +            + DI++    ++KL   ++           A++ +
Sbjct: 234 YVWVRAYAYPYKYDEAGRPAKILYYLMDITDEIAMQDKLRWVERERQRKEYELAKAKEAN 293

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
             KS FLA +SHEIRTPL AI+GF+ ++   +        +  Y + ID++  L+L ++ 
Sbjct: 294 RLKSMFLANMSHEIRTPLNAIVGFANILAETKEIEEEEREF--YVDIIDKNSELLLQLIE 351

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702
           D+LD SKIE+G  ++  +     E   E  ++  L    K +       +    + +D +
Sbjct: 352 DILDFSKIEAGTFDITKKNFDFKEICEETYAVHALKIP-KNVRFVFDRGSQPVTVFSDPK 410

Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
            V Q+  N L+NAI FT  G +I ++   + N+E+ + V DTG+G+++ +       F +
Sbjct: 411 RVIQVISNFLTNAIKFTSEG-EIKLAYKVS-NDEIRVSVSDTGMGISDDDCRTIFDRFVK 468

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
           +   +    +GTGLGL + K +++   G+  + ST   G+      PL +
Sbjct: 469 LNACK----QGTGLGLAICKNIIEKLGGRIGVESTLGVGSTFWFTLPLKE 514


>gi|86138545|ref|ZP_01057118.1| cytoplasmic sensor hybrid histidine kinase [Roseobacter sp. MED193]
 gi|85824605|gb|EAQ44807.1| cytoplasmic sensor hybrid histidine kinase [Roseobacter sp. MED193]
          Length = 793

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 104/492 (21%), Positives = 202/492 (41%), Gaps = 36/492 (7%)

Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399
            + + N +   +  +      E     S LL      D      +     ++       R
Sbjct: 33  KVVWGNAALSRIFHHS----HETWQHRSPLL----FLDEATTDFLQKGLKEQQASPIRLR 84

Query: 400 -LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI-------NKRKMEIEV 451
               I    +++L         A +  E+    G   +  + +         + + E   
Sbjct: 85  NALNIPVAGQDTLCFDLEVTFLAQENIEDTHVFGRFVDATERKQLQTRMKTAQAEAETVK 144

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI-LRKPFTVFLEQNTPSVMN 510
            +    + +  +G A+ +R+ ++++ N   ++L+ +    I +   F   +         
Sbjct: 145 ARFEHAISSIPEGFAMYDRDDVLVAFNAKYAELYKHTEPAIKVGATFESIMRYGLEHGQY 204

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSL--RIIIKKLPFSSCYSLTMH-DISEWKQE 567
                     L + L++        E+ L     + I+++       + +  D++++ Q+
Sbjct: 205 PEAKGQEEAWLAERLDRENRKRAPVERRLPGGKFLRIQEVENERGDLIGLRSDVTQYYQQ 264

Query: 568 K-------NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           +         L+ A + AE  S  K  F AR+SHE+RTP+  I+G +EV+++       N
Sbjct: 265 QQELEQKAKDLAKANEEAEAASLSKDRFFARMSHELRTPMNGILGLAEVLEHTAL----N 320

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
           P+   Y   I  S   +L I+ND+LD SK   GK     E  SL + + EA  L+Q  A+
Sbjct: 321 PQQRSYLKTISGSATSLLSIINDILDYSKATEGKFTFANERFSLKDTIYEAAGLIQPLAH 380

Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS---NEE 736
           +K +     +   +P     D   V+Q+ LN L NA+ FT   G + +   + +   + +
Sbjct: 381 DKNLDFWIEYPLTVPTHFFGDSARVRQVLLNHLGNALKFT-QNGHVGLRAAYQTVDGDAQ 439

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           + L + DTG G+   +++     + Q     +I  EGTGLGL ++KA+V+   G  ++ S
Sbjct: 440 LSLSIVDTGRGIPEEQMDTLFSAYEQANQETEIAVEGTGLGLAISKALVEQMGGAIHVVS 499

Query: 797 TPAKGTLIEIIF 808
           T  KG+   +  
Sbjct: 500 TIGKGSCFTVSL 511



 Score = 40.4 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 54/152 (35%), Gaps = 12/152 (7%)

Query: 451 VMQLCSILEATSDGIAIINREG-------IILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
              L S+L+   D   I+  E         ++  N A+S++F +  E    +   +FL++
Sbjct: 4   KDLLFSVLQTQQDPAFILRLENELTLSSAKVVWGNAALSRIFHHSHETWQHRSPLLFLDE 63

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP--FSSCYSLTMHDI 561
            T   +   L E  +  +R         + ++     L +          +       D 
Sbjct: 64  ATTDFLQKGLKEQQASPIRLRNALNIPVAGQDTLCFDLEVTFLAQENIEDTHVFGRFVDA 123

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
           +E KQ + +    K    +  + K+ F   +S
Sbjct: 124 TERKQLQTR---MKTAQAEAETVKARFEHAIS 152


>gi|261340634|ref|ZP_05968492.1| sensor protein RcsC [Enterobacter cancerogenus ATCC 35316]
 gi|288317047|gb|EFC55985.1| sensor protein RcsC [Enterobacter cancerogenus ATCC 35316]
          Length = 948

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 99/494 (20%), Positives = 185/494 (37%), Gaps = 41/494 (8%)

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
             P+   +             + LT  +S   I+                 +  + ++L 
Sbjct: 239 SLPMGVTILDENGHT-----LISLTGPESRLKIDPHWMQERSWFGY----TSGFRELVLK 289

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV---DTRINK 444
           +S      +      +    E    +              +       E         + 
Sbjct: 290 KSLPPSSLSIVYSVPVDMVLERIRILILNAILLNVLVGVALFMLARMYERRIFIPAESDA 349

Query: 445 RKMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
           +++E        I+ +   GI I+  ++G  + +N            +  ++     +  
Sbjct: 350 QRLEEHEQFNRKIVASAPVGICILRTQDGTNILSNELAHNYLNMLTHEDRQR--LTQIIC 407

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                    LT   +                    L +  +  +    +     + D+S 
Sbjct: 408 GQQVNFVDVLTSTHTN-------------------LQISFVHSRYRNENVAICVLVDVSA 448

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + +  L    + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R 
Sbjct: 449 RVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR- 506

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
                 ++ S +L+L I++D+LD SKIES ++ +     S  E ++   +        K+
Sbjct: 507 --LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHISANYMPLVVRKQ 564

Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           + +      ++P  +  D   ++Q+  N+LSNAI FT +G  I++       + + +RVR
Sbjct: 565 LGLYCFIEPDVPLTLHGDPMRLQQVISNLLSNAIKFTDTG-CIVLHVCLV-GDYLTIRVR 622

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTGVG+   E+ +   PF Q+    Q   +GTGLGL + + ++    G   + + P  G+
Sbjct: 623 DTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDTEPGMGS 682

Query: 803 LIEIIFPLYDTSHP 816
              I  PLY   +P
Sbjct: 683 QFTIRIPLYSAQYP 696


>gi|228909460|ref|ZP_04073285.1| hypothetical protein bthur0013_36120 [Bacillus thuringiensis IBL
           200]
 gi|228850237|gb|EEM95066.1| hypothetical protein bthur0013_36120 [Bacillus thuringiensis IBL
           200]
          Length = 510

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 95/523 (18%), Positives = 196/523 (37%), Gaps = 39/523 (7%)

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDD 359
            + +                +     +  P     +   G + + NPS   +  Y S++ 
Sbjct: 13  RHPNISRRLRNHIQDRSLTEMYASLFEHNPDSIISLNLEGVILHINPSAERILGYTSLE- 71

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
           +E     S L       + +  + V+    +         + +I       L +      
Sbjct: 72  LEQKNITSIL-------EAHISEQVLQNIKNTEADNQQEYILSIYHKNRFLLDVVTKLVP 124

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
              Q         ++P +   RI +  ++    +L +++ +    +   + EG  L  N 
Sbjct: 125 IFVQNRLTGVYAIMKPLEKSERI-ENMLKESEKRLRTLVNSMPAFVIFKDHEGRWLEAND 183

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMN----HYLTEILSLDLRQTLEKITLGSTKE 535
                F +       K  +  ++ N            + E+     RQ L        ++
Sbjct: 184 YALSCFNFHHVPYHGKKDSELIQYNEAYREAFLHCEEIDELAWQ-QRQILHGEEFIIHRD 242

Query: 536 EKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
           +  L L I    L           +   D++E K+ +  L  ++K+A           A 
Sbjct: 243 DFDLILSISKVPLYHPDGSRKGLIVMGRDVTELKETEKLLRKSEKLAVV-----GQLTAG 297

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           ++HEIR PLT++ GF  ++      P  +     Y + +    + +  I +  + +SK +
Sbjct: 298 IAHEIRNPLTSLKGFLTLLL-----PEISEEQQWYIDVMLSEISQMESITSQFMAMSKPQ 352

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
                L  +  ++   + E ++ +   A    + I     + +  I  D   +KQ+ +NI
Sbjct: 353 ----VLSIQTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYVYDIQCDGNQLKQVFINI 408

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           L NAI   P+GG I I T    +  +++R+ D G G+    + +  +PF        ++ 
Sbjct: 409 LKNAIEAMPNGGNIFIQTKPLEDNFILIRIIDEGCGIPEDRISRLGEPFY------SLKE 462

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           +GTGLGL +   +++ + G+ +I S   KGT+++I  PL  + 
Sbjct: 463 KGTGLGLMMCYKIIEEHHGRLHISSELNKGTIVDIELPLSSSH 505


>gi|229090538|ref|ZP_04221774.1| hypothetical protein bcere0021_13640 [Bacillus cereus Rock3-42]
 gi|228692805|gb|EEL46528.1| hypothetical protein bcere0021_13640 [Bacillus cereus Rock3-42]
          Length = 591

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 80/371 (21%), Positives = 154/371 (41%), Gaps = 39/371 (10%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            ++ E  QL SIL + +DG+  +N+EG ++  N           E+       + L +  
Sbjct: 249 ALQQEKEQLASILSSMADGVITLNQEGEVVVINPPAEHFLQVWQEEK-----EIELSKKL 303

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
           PS +      ++  + +Q +E        +   + L   +            + D++E +
Sbjct: 304 PSELVELFHLVVESEQQQVVEINLQ----KGNYVVLMTPLYNQTKIRGAVAVLRDMTEER 359

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + +                + DF+A VSHE+RTP+  + G+SE I +            E
Sbjct: 360 RLE--------------KMRQDFIANVSHELRTPMVMLQGYSEAILDDIVQT--KEEINE 403

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           +   I      +  +VN+LLD++++ESG + LH   V +   V +     Q  A +K + 
Sbjct: 404 FVQIIYDESVRLGKLVNELLDLARMESGNVELHIGEVDIHPFVEKIGRKFQGIAKDKEVA 463

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +   F + I +   D   ++Q+  N++ NAI  T +GG + +     +N  +I  V+D+G
Sbjct: 464 LTVDFKDPIEQYPFDADRMEQVLTNLIDNAIRHTNAGGHVTLVIDTKNNG-LIFEVQDSG 522

Query: 746 VGMTNYELEKAMKPFGQIPNSQQI-------RGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
            G+   ++      F +   ++          G        +AK +V  + GK  + S  
Sbjct: 523 AGIPEEDIPFLFDRFYKADKARTRGKKGGTGLGL------AIAKNIVQGHDGKIAVSSVV 576

Query: 799 AKGTLIEIIFP 809
            +GT   +  P
Sbjct: 577 GEGTTFSVYLP 587


>gi|253700058|ref|YP_003021247.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21]
 gi|251774908|gb|ACT17489.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21]
          Length = 810

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 106/659 (16%), Positives = 222/659 (33%), Gaps = 56/659 (8%)

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP--HLRMKNKVSSLTE 245
           R      A     +++F  L E       +      I    S         ++++  +  
Sbjct: 35  RRLKAAFASLAEGERRFHTLVEQAGDGFELLGPDGQILDMNSATCDCLGYARDELLKMNI 94

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
                    +     L  + +      E  H          +   ++     +    L+ 
Sbjct: 95  TDIDPIITKEAFSARLAEAIDKPPTTFESIHKRKDGTTFPVEINASVFRL-GDVNVSLAL 153

Query: 306 RNHPSLSAYFDEGENLTPETVDKC--PIPFFVYS----HGNLFYANPSFLLLTKYKSVDD 359
               S      E  + T +   +        +Y      G   Y +P+F  +T Y +VD+
Sbjct: 154 TRDISQRRRQLEELDYTNQCFTQALNSRHHVLYRLNVKEGRYDYLSPAFEQMTGY-AVDE 212

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVM----LYRSDRTCIAASARLHTIQWNRENSLAMTF 415
            +    L  L       D+           L + D   +      + +         +  
Sbjct: 213 FKKNRSLD-LFREYLHPDDRLRIFAAIDEALLKRDTATVNLDLE-YRLMKADGAYCWLRD 270

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
                 ++  +     G   +  ++++ ++    E  Q  ++     D + I +  G IL
Sbjct: 271 STTACFDEQGDLECFFGSAHDITESKLAEK----EREQFYTLFMTADDLMCIADPMGAIL 326

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
             N + S++ GY  E+++ +PF  F+  +        +T+ +     +T+        K+
Sbjct: 327 RANPSCSEILGYSGEELVARPFIDFVHPDDKERTIEEMTQQVRSG--RTMSFENRYVRKD 384

Query: 536 EKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA--EKESSHKSDFLARVS 593
             L  L               T  +I+E KQ + + +H ++     ++          ++
Sbjct: 385 GSLRWLSWSAVHNQKDGTTYATARNITERKQAEEERNHLQQQLLHTQKLESLGVLAGGIA 444

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           H+    LT+IIG ++ +      P            I+++     D+   +L  S    G
Sbjct: 445 HDFNNILTSIIGNAD-LALIHLDPASPAMI--NLKRIEKAATRAADLAKQMLAYS----G 497

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713
           K     E   ++  V E   ++Q+  ++K + +  + A ++P + AD   ++Q+ +N++ 
Sbjct: 498 KGRFVVEATDINLLVEELKHILQVSISKKAV-MNYNLARSLPAVDADATQIRQVVMNLVI 556

Query: 714 NAIHF-TPSGGQIIISTT-----------------HTSNEEVILRVRDTGVGMTNYELEK 755
           NA        G I I+T                        V + V DTG GM+   + K
Sbjct: 557 NASEALGEKDGVINITTGSVQCDGNYPQETWPTDTVLQGPYVFVEVADTGCGMSPETVSK 616

Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
              PF         +  G GLG+     +V  + G   + S   KG++  ++ P  D +
Sbjct: 617 IFDPFFTT------KFTGRGLGMAAVLGIVRGHKGTIKVGSESGKGSVFTVLLPASDKA 669



 Score = 83.5 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/381 (9%), Positives = 96/381 (25%), Gaps = 33/381 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147
           +   G + +++      +G    +++ M + D+  I+  +  +  + + + +  T   ++
Sbjct: 65  LGPDGQILDMNSATCDCLGYARDELLKMNITDIDPIITKEAFSARLAEAIDKPPT-TFES 123

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                +GT   V I+ +   +   N          +                 ++ F+  
Sbjct: 124 IHKRKDGTTFPVEINASVFRLGDVN------VSLALTRDISQRRRQLEELDYTNQCFTQA 177

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRM--------KNKVSSLTEYYAHKDDVLKTEKY 259
              +         K   +   SP              KN+   L   Y H DD L+    
Sbjct: 178 LNSRHHVLYRLNVKEGRYDYLSPAFEQMTGYAVDEFKKNRSLDLFREYLHPDDRLRIFAA 237

Query: 260 PLLTSEESSLPE-----QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
                 +          +      +      +       +   +   +    +  + S  
Sbjct: 238 IDEALLKRDTATVNLDLEYRLMKADGAYCWLRDSTTACFDEQGDLECFFGSAHDITESKL 297

Query: 315 FDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
            ++                 +    G +  ANPS   +  Y   + +            P
Sbjct: 298 AEKEREQFYTLFMTADDLMCIADPMGAILRANPSCSEILGYSGEELVARPFID---FVHP 354

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
                  I+ +         ++   R   ++ +             + +           
Sbjct: 355 D-DKERTIEEMTQQVRSGRTMSFENRY--VRKDGSLRWLSWSAVHNQKDGT-----TYAT 406

Query: 434 EPEDVDTRINKRKMEIEVMQL 454
                + +  + +      QL
Sbjct: 407 ARNITERKQAEEERNHLQQQL 427



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/305 (7%), Positives = 66/305 (21%), Gaps = 12/305 (3%)

Query: 92  HGYLKEISEELPKTIGNYAFKM----IGMRLCDVSDILH-IDPNNHIGDLLKRQN--TWY 144
            G    +S    +  G    +           +       +     I + L +++  T  
Sbjct: 192 EGRYDYLSPAFEQMTGYAVDEFKKNRSLDLFREYLHPDDRLRIFAAIDEALLKRDTATVN 251

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
                  ++    Y  +  +    +    +   F  FG  H            ++    F
Sbjct: 252 LDLEYRLMKADGAYCWLRDSTTACFDEQGDLECF--FGSAHDITESKLAEKEREQFYTLF 309

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
               ++      +        S      +   +       ++    D     E+      
Sbjct: 310 MTADDLMCIADPMGAILRANPSCSEILGYSGEELVARPFIDFVHPDDKERTIEEMTQQVR 369

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
              ++  +  +   + +           Q +        +           +  +     
Sbjct: 370 SGRTMSFENRYVRKDGSLRWLSWSAVHNQKDGTTYATARNITERKQAEEERNHLQQQLLH 429

Query: 325 TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
           T     +       G     N     +     +  +      S  +   K  +  A +  
Sbjct: 430 TQKLESLGVLA--GGIAHDFNNILTSIIGNADL-ALIHLDPASPAMINLKRIEKAATRAA 486

Query: 385 MLYRS 389
            L + 
Sbjct: 487 DLAKQ 491



 Score = 58.1 bits (139), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 10/124 (8%), Positives = 36/124 (29%), Gaps = 9/124 (7%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGKTT 148
           D  G +   +    + +G    +++     D       +     +   ++   T   +  
Sbjct: 320 DPMGAILRANPSCSEILGYSGEELVARPFIDFVHPDDKERTIEEMTQQVRSGRTMSFENR 379

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +G+  +    L+   ++++     G   +                  L ++  H  
Sbjct: 380 YVRKDGSLRW----LSWSAVHNQK---DGTT-YATARNITERKQAEEERNHLQQQLLHTQ 431

Query: 209 EIKK 212
           +++ 
Sbjct: 432 KLES 435


>gi|332885680|gb|EGK05926.1| hypothetical protein HMPREF9456_02190 [Dysgonomonas mossii DSM
           22836]
          Length = 916

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 100/483 (20%), Positives = 185/483 (38%), Gaps = 26/483 (5%)

Query: 332 PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR 391
             F+   G L +AN  FLL        DI              L   +  +  ++ +   
Sbjct: 313 GVFMED-GQLIFANQQFLLHNNISKDKDISDYKITE-------LKQLSLEQWDLILKKLE 364

Query: 392 TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV 451
           +  +    +       E +     I +   + F                +  + + +   
Sbjct: 365 SNESYKYNIIYTDSETEKTSYFDCISYLTRDTFGT-KFIWSYWSNTTKQKYAEIESKNTR 423

Query: 452 MQLCSILEATSDGIAIINR--EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
             +  +L+     + I N   +   +  N+  ++ +    +D   K       +      
Sbjct: 424 NLMNMVLDNMPISVFIKNPLNDYKYIYWNKISTQFYLVQNDDFSDKTDFDIFPKEVAERY 483

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII--KKLPFSSCYSLTMHDISEWKQE 567
                 +    + Q + +  +      + + +  I    +   SS       DI+E KQ 
Sbjct: 484 RAEDIAVFETGVPQRVFQEFVDDEGNIRYVDILKIRLNSETDNSSLVIGLGWDITELKQI 543

Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
           + +L+ AK  AE+    KS FL+ +SHEIRTPL AI+GFS +I           +   Y 
Sbjct: 544 EKELTTAKLKAEQLDKLKSAFLSNMSHEIRTPLNAILGFSRIIAETD----DQEKRNYYF 599

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
           N+++ +   +L +VN++LD SKIESG +    E         E         + +  LI 
Sbjct: 600 NFVESNSGRLLGLVNEILDFSKIESGIVEFEPEDFDFGMLCLEIYETYASQCHPETELIY 659

Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS-NEEVILRVRDTGV 746
            +    +  I +D   + Q+  N++ NA  FT  G    I       +  V + V D+G+
Sbjct: 660 NNIGAEL-WIRSDRNRIHQVLSNLIINAQKFTKKG---YIKYGFEVIDNNVKVYVNDSGI 715

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+   +L+K  + F Q+ ++      GTGLGL + +++V+   G+  + S   KG+    
Sbjct: 716 GIVEDQLDKIFERFMQVDSNAI----GTGLGLAICRSIVERLGGEISVTSELQKGSCFTF 771

Query: 807 IFP 809
             P
Sbjct: 772 TLP 774


>gi|328874987|gb|EGG23352.1| histidine kinase [Dictyostelium fasciculatum]
          Length = 1142

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 92/383 (24%), Positives = 165/383 (43%), Gaps = 23/383 (6%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            ++     ++ S +E   DGI I +  G I   N +V+   GY   ++L K F+  +  +
Sbjct: 383 EELTESAKRMVSCVEFMQDGIEIWDPNGHIKYLNHSVAATSGYSRWELLGKEFSFLI--D 440

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDIS 562
              ++      I          +     T +       I      F     Y+    D++
Sbjct: 441 NQELIPQMWATITGGKNWNGFIRTKCHVTNQVIYFETNISPVYDSFEKLIYYNCIKRDVT 500

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           + + ++   +  ++   ++S  +   L+ +SH+IRTP++ IIG ++++         +P+
Sbjct: 501 QKRIDEESRTIEQEKTLEKSRLR---LSMMSHDIRTPMSGIIGMTDLLSETDL----HPQ 553

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
              Y + I  S N +L I+NDLLDISKIE+GK  +        +AV E   L+   A  K
Sbjct: 554 QRHYLDIIKVSSNSLLTIINDLLDISKIEAGKFEVDNIEFDFRDAVEEVCELMGERAQAK 613

Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH---TSNEEVI 738
            + +  S    +P+ ++ D   +KQI  N+L N++ FT  G  II  T       + ++ 
Sbjct: 614 GLDLICSVHPLVPQKLIGDASRLKQILTNLLGNSVKFTDIGDIIIACTLQHIDQDDVDIR 673

Query: 739 LRVRDTGVGMTNYELEKAMKPF---GQIPNSQ-QIRGEGTGLGLPLAKAMVDA-NMGKFY 793
           + V+DTG+G+    L    K F    Q        +  G+GLGL + K +      G+  
Sbjct: 674 IEVKDTGIGIKKEALPLLFKAFTSAWQAEGGNITRQYAGSGLGLAICKELAQLAFNGEIG 733

Query: 794 IFSTPAKGTLIEIIF---PLYDT 813
           + S    G+         P+  T
Sbjct: 734 VESQYGVGSTFWTHLHFKPVQST 756



 Score = 45.8 bits (107), Expect = 0.027,   Method: Composition-based stats.
 Identities = 18/133 (13%), Positives = 41/133 (30%), Gaps = 7/133 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            W  D +G++K ++  +  T G   ++++G     + D   + P   +   +     W G
Sbjct: 405 IW--DPNGHIKYLNHSVAATSGYSRWELLGKEFSFLIDNQELIP--QMWATITGGKNWNG 460

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
                    TN  +  +    P+Y    +   +    I                  +K  
Sbjct: 461 FIRTKCHV-TNQVIYFETNISPVYDSFEKLIYYN--CIKRDVTQKRIDEESRTIEQEKTL 517

Query: 206 HLHEIKKGHSSVE 218
               ++    S +
Sbjct: 518 EKSRLRLSMMSHD 530


>gi|301053116|ref|YP_003791327.1| sensor histidine kinase [Bacillus anthracis CI]
 gi|300375285|gb|ADK04189.1| sensor histidine kinase [Bacillus cereus biovar anthracis str. CI]
 gi|324325593|gb|ADY20853.1| sensor histidine kinase [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 591

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 80/371 (21%), Positives = 155/371 (41%), Gaps = 39/371 (10%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            ++ E  QL SIL + +DG+  +N+EG ++  N           E+       + L +  
Sbjct: 249 ALQQEKEQLASILSSMADGVITLNQEGEVVVINPPAEHFLQVWQEEK-----EIELSKKL 303

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
           PS +      ++  + +Q +E        +   + L   +            + D++E +
Sbjct: 304 PSELVELFHLVVESEQQQVVEINLQ----KGNYVVLMTPLYNQTKIRGAVAVLRDMTEER 359

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + +                + DF+A VSHE+RTP+  + G+SE I +            E
Sbjct: 360 RLE--------------KMRQDFIANVSHELRTPMVMLQGYSEAILDDIVQT--KEEINE 403

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           +   I      +  +VN+LLD++++ESG + LH   V +   V +     Q  A +K + 
Sbjct: 404 FVQIIYDESVRLGKLVNELLDLARMESGNVELHIGEVDIHPFVEKIGRKFQGIAKDKEVA 463

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +   F ++I +   D   ++Q+  N++ NAI  T +GG + +     +N  +I  V+D+G
Sbjct: 464 LTVDFKDSIEQYPFDADRMEQVLTNLIDNAIRHTNAGGHVTLVIDTKNNG-LIFEVQDSG 522

Query: 746 VGMTNYELEKAMKPFGQIPNSQQI-------RGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
            G+   ++      F +   ++          G        +AK +V  + GK  + S  
Sbjct: 523 AGIPEEDIPFLFDRFYKADKARTRGKKGGTGLGL------AIAKNIVQGHDGKIAVSSVV 576

Query: 799 AKGTLIEIIFP 809
            +GT   +  P
Sbjct: 577 GEGTTFSVYLP 587


>gi|229587665|ref|YP_002869784.1| putative two-component system sensor kinase [Pseudomonas
           fluorescens SBW25]
 gi|229359531|emb|CAY46372.1| putative two-component system, sensor kinase [Pseudomonas
           fluorescens SBW25]
          Length = 595

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 102/558 (18%), Positives = 213/558 (38%), Gaps = 36/558 (6%)

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
           E+ P   + ++S     D     +    +            +  E L+  +         
Sbjct: 70  EERPDPEALQTSKQRYVDLLDQGIAHEQRDGRGTGFSQAKGQYQELLNAFDESQQPTPPP 129

Query: 317 EGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
             +    +T +          +G +     +   ++  +     E A  ++ LL    L+
Sbjct: 130 GAKEKLTDTFNAL-------RNGLINEHKQALENISNSEHKSR-ERALLIAGLLGLVGLA 181

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
                       + R      A         +    +T  P   A +  +   + GI  E
Sbjct: 182 VLIIGFVTAHGIARRFGGPIEALAKAADKIGQGDFEVTL-PISSAAEMNQLTRRFGIMAE 240

Query: 437 DVDTRINK--RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
            +         ++     +L ++L++  DG+ +I+R+G +   N    +  G+  E + +
Sbjct: 241 ALRQHQATNVDELLAGQQRLQAVLDSIDDGLLMIDRQGRLEHLNPVAQRQLGWDEERLGQ 300

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-- 552
                 +       +   L         + LE        E +LL+  +           
Sbjct: 301 GLGEALVRPELDEQLQLVLRGGSLERAPEDLEVEV---EGELRLLTYSLTPVSHTQGHIL 357

Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
              + +HD++E +  +                +S+F+ R SHE+RTP+T  +  +  +  
Sbjct: 358 GAVMVLHDVTEQRAFE--------------RVRSEFVLRASHELRTPVTG-MHMAFGLFR 402

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
           +R     + R  +  + ++     ++ ++NDLL+ S+ ++G   L   P  + + +  A 
Sbjct: 403 ERAKFPPDSREADLLDTVNEEMQRLMQLINDLLNFSRYQNGLQKLTLGPCDVTDLLEHAR 462

Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
           +     AN + + +     +++PR+ AD   ++++  N+L NA+  TP+GGQI +     
Sbjct: 463 ARFVEPANVQNVELMVEAQSDLPRLYADQAQLERVLDNLLGNALRHTPNGGQIRLQ-ARR 521

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
             E VI+ V D G G+   +  +  +PF Q+      +  G GLGL L K +V  + G+ 
Sbjct: 522 HGERVIISVEDNGEGIAYGQQGRIFEPFVQV----GRKKGGAGLGLALCKEIVQLHGGRM 577

Query: 793 YIFSTPAKGTLIEIIFPL 810
            ++S P +GT   +  PL
Sbjct: 578 GVYSRPGQGTQFYMALPL 595



 Score = 48.9 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/241 (10%), Positives = 65/241 (26%), Gaps = 9/241 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G L+ ++    + +G    + +G  L +      +D       L+ R  +      
Sbjct: 274 IDRQGRLEHLNPVAQRQLGWD-EERLGQGLGEALVRPELDEQ---LQLVLRGGSLERAPE 329

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
              +E       +  +  P+        G     ++H          +  R +      H
Sbjct: 330 DLEVEVEGELRLLTYSLTPVSHTQGHILGA--VMVLHDVTEQRAFERV--RSEFVLRASH 385

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           E+ +   +     + +F +++  P    +  +         +   L  +       +   
Sbjct: 386 EL-RTPVTGMHMAFGLFRERAKFPPDSREADLLDTVNEEMQRLMQLINDLLNFSRYQNGL 444

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
                    +       +  F    N         +  + P L A   + E +    +  
Sbjct: 445 QKLTLGPCDVTDLLEHARARFVEPANVQNVELMVEAQSDLPRLYADQAQLERVLDNLLGN 504

Query: 329 C 329
            
Sbjct: 505 A 505


>gi|255015126|ref|ZP_05287252.1| putative two-component system sensor histidine kinase [Bacteroides
           sp. 2_1_7]
          Length = 512

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 99/524 (18%), Positives = 200/524 (38%), Gaps = 59/524 (11%)

Query: 324 ETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
               K P+   VY   G L   N +   L      D + I      L + P   ++    
Sbjct: 5   ALFQKLPVGIEVYDERGQLVDLNRTDENLFAISRKDIMGIN-----LFENPNFPEDKI-- 57

Query: 383 PVMLYRSDRTCIAASARLHTIQ---------WNRENSLAMTFIPFEKANQFPENMPQNGI 433
              L + +      +     IQ              +L ++        +  +      +
Sbjct: 58  -ARLKQGEMVVFDCNYEFDNIQTNEYYNIDPKKEGINLRLSIKCVPLKGEAEDICGYVLM 116

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIA---------IINREGIILSTNRAVSKL 484
             ++ +      K+E    +L +++  +   +           I+ +  +L  N++  + 
Sbjct: 117 FTDETEEYQKSEKVEELFTKLKTVMRCSDSLLWEYDVKTDKMHIDLDLRVLG-NKSRLRA 175

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS-TKEEKLLSLRI 543
                    +K F   +       +   +     + + +  E         E + + +R 
Sbjct: 176 SNLT----TKKDFCEIVYPEDRERVL--VQGFEKIVMGEIGEYSIQYRQLFEGQYVWVRA 229

Query: 544 IIKKLPFSSC-----YSLTMHDISEWKQEKNKLSHAKKI----------AEKESSHKSDF 588
                 +            + DI++    ++KL  A++           A++ +  KS F
Sbjct: 230 YAYPYKYDEAGRPAKILYYLMDITDEIAMQDKLRWAERERQRKEYELVKAKEANRLKSMF 289

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
           LA +SHEIRTPL AI+GF+ ++   +        +  Y + ID++  L+L ++ D+LD S
Sbjct: 290 LANMSHEIRTPLNAIVGFANILAETKEIEEEEREF--YVDIIDKNSELLLQLIEDILDFS 347

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIA 708
           KIE+G  ++        E   E  ++  L    K +       +    + +D + V Q+ 
Sbjct: 348 KIEAGTFDITKRNFDFKEICEETYAVHALKIP-KNVRFVFDRGSQPVTVFSDPKRVVQVI 406

Query: 709 LNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
            N L+NAI FT  G +I ++   + + E+ + V DTG+G++  +       F ++   + 
Sbjct: 407 SNFLTNAIKFTSEG-EIKLAYKVSKD-EIRVSVSDTGMGISEEDCRTIFDRFVKLNACK- 463

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
              +GTGLGL + K +++   G+  + ST   G+      PL +
Sbjct: 464 ---QGTGLGLAICKNIIEKLGGRIGVESTLGVGSTFWFTLPLKE 504



 Score = 43.9 bits (102), Expect = 0.10,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 41/128 (32%), Gaps = 20/128 (15%)

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
             ++ +    GI + +  G ++  NR    LF    +DI+            P+     +
Sbjct: 3   FNALFQKLPVGIEVYDERGQLVDLNRTDENLFAISRKDIMGINLF-----ENPNFPEDKI 57

Query: 514 TEILSLDL-----------RQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTM 558
             +   ++            QT E   +   KE   L L I    L   +     Y L  
Sbjct: 58  ARLKQGEMVVFDCNYEFDNIQTNEYYNIDPKKEGINLRLSIKCVPLKGEAEDICGYVLMF 117

Query: 559 HDISEWKQ 566
            D +E  Q
Sbjct: 118 TDETEEYQ 125


>gi|95929116|ref|ZP_01311861.1| multi-sensor signal transduction histidine kinase [Desulfuromonas
           acetoxidans DSM 684]
 gi|95135017|gb|EAT16671.1| multi-sensor signal transduction histidine kinase [Desulfuromonas
           acetoxidans DSM 684]
          Length = 595

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 102/582 (17%), Positives = 223/582 (38%), Gaps = 45/582 (7%)

Query: 242 SLTEYYAHKDDVLKTEKYPLLTSEESSLPE--QEDFHTINLNQYTKKQYFGTLQNNSKES 299
           S+    A  + +    +  L  S++  + +  ++                  L +  ++ 
Sbjct: 44  SVESLRARAELIALQIREHLEPSQQEFINDLCRQAGVRTETRITIMLPSGEVLGDTREDP 103

Query: 300 FEYLSHRNHPSLSAYFDEG---ENLTPETV--DKCPIPFFVYSHGNLFYANPSFLLLTKY 354
               +H + P + A  + G         T+  D   +   V +   +     + + +   
Sbjct: 104 KRMENHGSRPEVLAALEGGVGKSQRFSRTLQKDMMYLAVPVIADSRISGVVRTAMAV--- 160

Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
              +       L   L    +     +  + L+ S R           I+   E   +  
Sbjct: 161 --DEVNSRLVALRKQLAVGGVVAIVLVSILSLFISRRITRPLE----QIKQEAERYASGQ 214

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINK-RKMEIEVMQLCSILEATSDGIAIINREGI 473
                + +   E +       E       +   ++ +  +  ++L +  +G+  I+    
Sbjct: 215 LDHRLRISGSSEIVALGQTMNEMAAQLNERISTIDKQRREQDAVLSSMVEGVIAIDSRQN 274

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
           +L  N A + L     ++++ +P    +     + +  ++T  +  D  +T+EK  L   
Sbjct: 275 VLRMNPAAAHLLEIDPDNVVGRPVQEVVR---KAELLSFITAAM--DSERTIEKDVLLFR 329

Query: 534 KEEKL-LSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
            EE+L L     + +          +  +D++  ++ +                + DF+A
Sbjct: 330 GEEELCLQAHGTMLRGMGEESIGALVVFNDLTRQRRLET--------------MRRDFVA 375

Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650
            VSHE++TP+TAI GF E + +             +   ++R    +  I+ DL+ +S+I
Sbjct: 376 NVSHELKTPITAIKGFVETLLDGALDSRDESEQ--FLKIVERQVERLSVIIEDLMSLSRI 433

Query: 651 ESGKM--NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIA 708
           E G+       EP  L E +SE+++   + A    I ++     ++     +   ++Q  
Sbjct: 434 EQGEEHERFDLEPEKLAEVISESVNDCTVLAEGLGITLKQELDQDLTS-PLNAPLLEQAL 492

Query: 709 LNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
            N+L NAI ++ +   + I   +  +   I+RV D G G+    L +  + F ++  ++ 
Sbjct: 493 TNLLENAIKYSSTDSTVTIRC-YEEDGRAIVRVCDEGCGIEAEHLPRLFERFYRVDKARS 551

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            +  G+GLGL + K +V  + G+  + STP KG+   I  PL
Sbjct: 552 RQAGGSGLGLAIVKHIVQIHHGRVEVESTPGKGSDFIISLPL 593


>gi|228953917|ref|ZP_04115956.1| hypothetical protein bthur0006_32930 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228805885|gb|EEM52465.1| hypothetical protein bthur0006_32930 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 510

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 97/523 (18%), Positives = 196/523 (37%), Gaps = 39/523 (7%)

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDD 359
            + +                +     +  P     +   G + + NPS   +  Y S++ 
Sbjct: 13  RHPNISRRLRNHIQDRSLTEMYASLFEHNPDSIISLNLEGVILHINPSAERILGYTSLE- 71

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
           +E     S L         +  + V+    +         + +I       L +      
Sbjct: 72  LEQKNITSIL-------GAHISEQVLQNIKNTEADNQQEYILSIYHKNGFLLDVVTKLVP 124

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
              Q         ++P +   RI +  ++    +L +++ +    +   + EG  L  N 
Sbjct: 125 IFVQNRLTGVYAIMKPLEKSERI-ENMLKESKKRLRTLVNSMPAFVIFKDHEGRWLEAND 183

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMN----HYLTEILSLDLRQTLEKITLGSTKE 535
                F +       K  +  ++ N            + E+     RQ L        ++
Sbjct: 184 YALSCFNFHHVPYHGKKDSELIQYNEAYREAFLHCEEVDELAWQ-QRQILHGEEFIIHRD 242

Query: 536 EKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
           +  L L I    L   +       +   D++E K+ +  L  ++K+A           A 
Sbjct: 243 DFDLILSISKVPLYHPNGSRKGLIVMGRDVTELKETEKLLRKSEKLAVV-----GQLTAG 297

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           ++HEIR PLT++ GF  ++      P  N     Y + +    + +  I +  + +SK +
Sbjct: 298 IAHEIRNPLTSLKGFLTLLL-----PEINEEQKWYIDVMLSEISQMESITSQFMAMSKPQ 352

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
                L  +  ++   + E ++ +   A    + I     + +  I  D   +KQ+ +NI
Sbjct: 353 ----VLSIQTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYVYDIQCDGNQLKQVFINI 408

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           L NAI   P+GG I I T    +  +++R+ D G G+    + +  +PF        ++ 
Sbjct: 409 LKNAIEAMPNGGNIFIQTKPLEDNFILIRIIDEGCGIPEDRISRLGEPFY------SLKE 462

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           +GTGLGL +   +++ + GK +I S   KGT+++I  PL  + 
Sbjct: 463 KGTGLGLMMCYKIIEEHHGKLHISSELNKGTIVDIELPLSSSH 505


>gi|149276757|ref|ZP_01882900.1| two-component hybrid sensor and regulator [Pedobacter sp. BAL39]
 gi|149232426|gb|EDM37802.1| two-component hybrid sensor and regulator [Pedobacter sp. BAL39]
          Length = 512

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 91/520 (17%), Positives = 191/520 (36%), Gaps = 53/520 (10%)

Query: 317 EGENLTPETVDKCPIPFFVYS----HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
               L  + ++       +         + Y NP+F  L+ Y   + I    G +     
Sbjct: 10  PDPALLVKVLEAANTGVVITDNLLPDNPIIYCNPAFEQLSGYSRDEII----GRNCRFLQ 65

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
                  A   +              R +T                   N+  E     G
Sbjct: 66  SSDRSQQARFDIRAAIDAGENCVVQVRNYTKT---GVLFHNELYLSAVKNESGEVTNFIG 122

Query: 433 IEPEDVDTRINKRKME------------------IEVMQLCSILEATSDGIAIINREGII 474
           I+ +       ++ +E                       L SI+E   + + ++++E  +
Sbjct: 123 IQNDVSARVKAEQDLEQNYRETEQTVIDRTNMLRESEEYLSSIVETIRESLIVMDKEYKV 182

Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP-SVMNHYLTEILSLDLRQT-LEKITLGS 532
           LS N      F   + +   +              +   + +IL  +      E      
Sbjct: 183 LSVNNHFLSTFKVSINETKGRLLYELGNGQWNIPELKKMMEDILPTNNPVLDYEVEHEFP 242

Query: 533 TKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
               KL+ L     +L         L + DI+E +  + +              K DFL+
Sbjct: 243 HIGRKLMLLNAHRVELEGKFKDRILLAIEDITERRNIEQR--------------KDDFLS 288

Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650
             SHE++TPLT ++G+ ++++        + ++       +     +  ++ +LLD+S+I
Sbjct: 289 IASHELKTPLTTVVGYVQMMQR-LMPEQASDKFRSVVGKTEMYVERLNQLLTELLDVSRI 347

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710
           +SG + LH +    D+ V+EA+  +Q    + +I ++        +   D   + Q+  N
Sbjct: 348 QSGNIELHKDLFDFDKMVAEAVEGIQTATPKYQISLKGKAGT---QYFGDESHLTQVLTN 404

Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           ++SN I + P   ++ +  +  SN  + + V+D G+G+   E +K  + F ++  + Q  
Sbjct: 405 LISNGIKYAPDADEVEVYVSRVSN-FIKVSVKDFGMGIKEDERKKIFERFYRV-GAIQKN 462

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             G G+GL +   ++  + G F++ S   KG++     P+
Sbjct: 463 FPGMGIGLYICDQIIKNHNGSFWVESELGKGSVFSFTLPV 502



 Score = 45.0 bits (105), Expect = 0.056,   Method: Composition-based stats.
 Identities = 13/133 (9%), Positives = 41/133 (30%), Gaps = 8/133 (6%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN-HIGDLLKRQNTWYGKTTLWPIE 153
           +   +    +  G    ++IG     +            I   +        +   +   
Sbjct: 38  IIYCNPAFEQLSGYSRDEIIGRNCRFLQSSDRSQQARFDIRAAIDAGENCVVQVRNYTKT 97

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
           G   +  + L+A  + + + E + F G     +    +      + L++ +    +    
Sbjct: 98  GVLFHNELYLSA--VKNESGEVTNFIG-----IQNDVSARVKAEQDLEQNYRETEQTVID 150

Query: 214 HSSVEKEKYDIFS 226
            +++ +E  +  S
Sbjct: 151 RTNMLRESEEYLS 163


>gi|196228679|ref|ZP_03127545.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
 gi|196226960|gb|EDY21464.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
          Length = 916

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 93/652 (14%), Positives = 207/652 (31%), Gaps = 59/652 (9%)

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSS 242
            V           ++ ++++  L E           +    S  +    L     +++  
Sbjct: 164 RVTAELRASTRRLEQSEQRYRSLFEHNPDAVYSLDREGRFLSFNAAGEALTGYPTDELLL 223

Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302
           L  +     +                    E       ++  + +          +    
Sbjct: 224 LPYHRVLAPEDHARAARDFARVLNGETTCSELSLARGDDKRCRAKITSLPIIVDGKIVGA 283

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDI 360
                  +     +E      E VD     F++       + Y NP+F  L         
Sbjct: 284 FCIAQDVTQKRESEERFQQLAENVD---DAFWILDVATQRMLYTNPAFQRLQGRDD---- 336

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
           E                + A       +      A +A    +Q +           F  
Sbjct: 337 EPLNPDPHTYLESIHPQDRARVIRTFQQM---PYAVNAEYRIVQPDG-TVRWNWARTFPI 392

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
            +   E     GI  +  + +  +  +  +     ++L+   + I +   +G+I   NR+
Sbjct: 393 RDGRGEVYRIAGIARDITERKEAEDLIGEQ----AALLDNAQEAIYVQGLDGVIKFWNRS 448

Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
             + +G    +++          ++          +             +      + ++
Sbjct: 449 AERTYGRHAAEVIGSRLLPHAAHDSDRHNTARRQVLEQGKWIG----ELVEQIGIGREIT 504

Query: 541 LRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
           +      +  +            DI+E ++ + +   A+++              ++H++
Sbjct: 505 VEGHWTLVRDAEGEPKSILCINTDITERRKLEAQFLRAQRM-----ESIGTLAGGIAHDL 559

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
              L+ I+   +++K +      +P  +E    ++ S     D+V  +L  ++   G+  
Sbjct: 560 NNVLSPIVMSVDLLKMK----TDDPACLEVLETVETSARRGADMVQQVLSFARGVEGQRI 615

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716
           +    V     + E   +V   A  K I ++ S   ++  +L D   + Q+ LN+  NA 
Sbjct: 616 I----VQPKHLLKEVQKIV-ADAFPKNIELKLSQKPDLWNVLGDPTQLHQVLLNLCVNAR 670

Query: 717 HFTPSGGQIIISTT--------------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
              P GG+I I+                  +   VI++V+D G GM +  +EK   PF  
Sbjct: 671 DAMPEGGRITIAAENMTVDEPYASMHHDAKAGPHVIIQVQDNGTGMPSALIEKIFDPFFT 730

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
                   G+GTGLGL  + A+V ++ G   + S   +G+  +I  P Y   
Sbjct: 731 TKEL----GKGTGLGLSTSLAIVKSHGGFILVSSEVGRGSTFKIHLPAYQEE 778



 Score =  107 bits (267), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 36/378 (9%), Positives = 89/378 (23%), Gaps = 29/378 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH-IDPNNHIGDLLKRQNTWY 144
            +++D  G     +       G    +++ +    V               +L  + T  
Sbjct: 194 VYSLDREGRFLSFNAAGEALTGYPTDELLLLPYHRVLAPEDHARAARDFARVLNGETTCS 253

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
             +      G +      + +LPI   + +  G   F I              +  +++F
Sbjct: 254 ELSLA---RGDDKRCRAKITSLPI-IVDGKIVGA--FCIAQDVTQK-------RESEERF 300

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
             L E       +           +P            L        + +  +    +  
Sbjct: 301 QQLAENVDDAFWILDVATQRMLYTNPAFQRLQGRDDEPLNPDPHTYLESIHPQDRARVIR 360

Query: 265 EESSLP----EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
               +P     +      +            +++   E +         +     ++   
Sbjct: 361 TFQQMPYAVNAEYRIVQPDGTVRWNWARTFPIRDGRGEVYRIAGIARDITERKEAEDLIG 420

Query: 321 LTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
                +D      +V    G + + N S        + + I      S LL       + 
Sbjct: 421 EQAALLDNAQEAIYVQGLDGVIKFWNRSAERTYGRHAAEVIG-----SRLLPHAAHDSDR 475

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
                         I        I       + +        +   E      I  +  +
Sbjct: 476 HNTARRQVLEQGKWIGELVEQIGI----GREITVEGHWTLVRDAEGEPKSILCINTDITE 531

Query: 440 TRINKRKMEIEVMQLCSI 457
            R  + +  +   ++ SI
Sbjct: 532 RRKLEAQF-LRAQRMESI 548



 Score = 85.8 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 65/219 (29%), Gaps = 18/219 (8%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRIN-KRKMEIEVMQLCSILEATSDGIAIINREGIILS 476
             + +                       R++E    +  S+ E   D +  ++REG  LS
Sbjct: 146 VARVDAILRVKRTEAELRRVTAELRASTRRLEQSEQRYRSLFEHNPDAVYSLDREGRFLS 205

Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
            N A   L GYP +++L  P+   L     +        +L+ +   +   +  G  K  
Sbjct: 206 FNAAGEALTGYPTDELLLLPYHRVLAPEDHARAARDFARVLNGETTCSELSLARGDDKRC 265

Query: 537 KLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKK----IAEKESSHKSDFLARV 592
           +     + I              D+++ ++ + +     +                L   
Sbjct: 266 RAKITSLPIIVDGKIVGAFCIAQDVTQKRESEERFQQLAENVDDAFWILDVATQRMLYT- 324

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
                 P        + ++ +   PL NP    Y   I 
Sbjct: 325 -----NP------AFQRLQGRDDEPL-NPDPHTYLESIH 351


>gi|310820195|ref|YP_003952553.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309393267|gb|ADO70726.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 758

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 105/646 (16%), Positives = 201/646 (31%), Gaps = 59/646 (9%)

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
           D+      E      +V      I    +    +     V    E    +          
Sbjct: 2   DQWALRFFESSTELLAVLHPDGRILQANAAWRGV-----VGWPPEALKAEGYRSFVHPED 56

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF----EYLSHRNHPSLSAYFD 316
           L   +   L         NL+   +      +  +          +L     P +   F 
Sbjct: 57  LGAMDAQLLALGGGEGRANLSCRWRCHDGAWVSLSWSVVSSGEDGWLFCTVRPPVPPAFT 116

Query: 317 EGENLTPETVDKCPIPF--FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST--LLDA 372
                   + D  P            + YAN  F  +   ++V+ +   G LS   L+  
Sbjct: 117 PEARSWSMS-DSLPFGLYLMETRADRILYANHRFCQMAGVEAVEALIRKGALSHSQLIHH 175

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
                N         R     +A   R   +    E+   +  +    A    +      
Sbjct: 176 HLSPQNAKAFFHSEARQGTPPLALEDREVAL----ESGRLLRRLATPMATADGKMSYILY 231

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE-D 491
           +  +  + R  +  +    +    ++E   DG+ +  R    +  N ++    GY  E +
Sbjct: 232 LFEDVTERRRTENALLSSELNFHKLIEGMPDGVFVH-RNRRFIYVNNSLRMALGYEHESE 290

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP-- 549
           ++ K     +  +   ++   +  I +      L+       ++            +   
Sbjct: 291 LIGKSIWSIVHPDDLGLVRERVHTIDNRREIVPLQ-EIRYLRRDGSWYDAESTGVPVEFN 349

Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                 +   DI+E K+ + +L    ++A   +       A V HEI  PL+ +I    +
Sbjct: 350 GEEASVVIARDITERKRMQAQLLQTDRMALVGT-----LAAGVGHEINNPLSYVIANLNL 404

Query: 610 IKNQRFGP-----------------LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
                  P                        E         N V +IV DL   S+ ++
Sbjct: 405 ALESLRLPTRECECSLEATGAPGYAASLRELEELLQEAQEGANRVRNIVRDLKSFSRQDA 464

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712
            +       VS+ E++  +I +  +     R  +   +   +P + AD   + Q+ LN+L
Sbjct: 465 ER----RTEVSVQESLDFSIKMASVEL-RHRAHLIRKYEP-VPPVYADTSRLGQVFLNLL 518

Query: 713 SNAIHFTPSGG----QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
            NA    P G     QI +        +V + V DTG G++    ++   PF        
Sbjct: 519 MNAAQAIPEGSNARNQITVWVRPGPPGQVAVDVSDTGAGISPEVQDRIFDPFFTTKP--- 575

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
             G GTGLGL +   ++ +  G+  + S   KGT   ++ P    S
Sbjct: 576 -VGSGTGLGLSICHGIIRSLGGEISVSSELGKGTTFTVLLPAASAS 620



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/383 (8%), Positives = 85/383 (22%), Gaps = 24/383 (6%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150
             G + + +      +G     +             +   +     L         +  W
Sbjct: 21  PDGRILQANAAWRGVVGWPPEALKAEGYRSFVHPEDLGAMDAQLLALGGGEGRANLSCRW 80

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH---- 206
                +        ++     +        F  V                          
Sbjct: 81  RC--HDGAWVSLSWSVVSSGEDGWL-----FCTVRPPVPPAFTPEARSWSMSDSLPFGLY 133

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
           L E +         ++   +       L  K  +S     + H         +     + 
Sbjct: 134 LMETRADRILYANHRFCQMAGVEAVEALIRKGALSHSQLIHHHLSPQNAKAFFHSEARQG 193

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL----SHRNHPSLSAYFDEGENLT 322
           +     ED      +    ++    +     +    L                   E   
Sbjct: 194 TPPLALEDREVALESGRLLRRLATPMATADGKMSYILYLFEDVTERRRTENALLSSELNF 253

Query: 323 PETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
            + ++  P   FV+ +    Y N S  +   Y+   ++      S +           + 
Sbjct: 254 HKLIEGMPDGVFVHRNRRFIYVNNSLRMALGYEHESELIGKSIWSIVHPDDLGLVRERVH 313

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
            +   R     +     L  I++ R +             +F        I  +  + + 
Sbjct: 314 TIDNRR---EIVP----LQEIRYLRRDGSWYDAESTGVPVEFNGEEASVVIARDITERKR 366

Query: 443 NKRKMEIEVMQLCSILEATSDGI 465
            + ++        +++   + G+
Sbjct: 367 MQAQLLQTDRM--ALVGTLAAGV 387


>gi|260777312|ref|ZP_05886206.1| hypothetical protein VIC_002706 [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260606978|gb|EEX33252.1| hypothetical protein VIC_002706 [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 882

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 89/260 (34%), Positives = 140/260 (53%), Gaps = 10/260 (3%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I   K  +  L  AK+ AE  +  KS FLA +SHEIRTPL  I+G +E++ + R     N
Sbjct: 364 IQAQKDHERDLVVAKENAEAANQAKSVFLANMSHEIRTPLNGIMGMTEILSDSRL----N 419

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
               +  + ID S + +L ++ND+LD+SKIESG + L      + EAV EA+++V   A 
Sbjct: 420 SSQKDILSDIDVSSHALLVLINDILDLSKIESGNLTLSPSHADVREAVFEAMNMVSTKAL 479

Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHT-SNEEV 737
           ++++ +R + + +IP  +  D    KQI +N+LSNA+ FT  G   +++   +      +
Sbjct: 480 KQQVELRATLSPDIPDSLYIDEFRFKQILMNLLSNAVKFTQDGSVSVVVKLMNEGEKAYL 539

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
              V DTGVG+   +LE+  +PF Q   S   R  GTGLGL + + + +   G     ST
Sbjct: 540 HCSVVDTGVGINEEKLEEIFEPFTQEDGSITRRYGGTGLGLAICRQIAELMGGSITASST 599

Query: 798 PAKGTLIEIIFP---LYDTS 814
           P  G+    + P   + +TS
Sbjct: 600 PGLGSRFSFVIPAQSVVETS 619


>gi|298483182|ref|ZP_07001362.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
 gi|298270699|gb|EFI12280.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
          Length = 579

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 87/381 (22%), Positives = 161/381 (42%), Gaps = 16/381 (4%)

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFG-YPVE 490
           I          +  ++     +  +L+  +  I + + +   ++  N+   +  G  P  
Sbjct: 197 IVSTATKRWQVETSLQQSQRTMQKVLDNINANIFVSDYDTLKVIFANKPFREEAGEVPEN 256

Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL-RIIIKKLP 549
               +     LE          L  + +      +      +   ++  ++  + IK L 
Sbjct: 257 AECWRMLNAGLENGCKHCPKPKL--LDANRKFTGVHFWEDYNPVTKRWYTIQSMAIKWLD 314

Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                     DI+  KQ + +L  AK+ AE+    KS FLA +SHEIRTPL AI+GFS +
Sbjct: 315 GRWAIMELATDITTRKQVELELIQAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSL 374

Query: 610 IKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
           +                Y + +  +  L+L++++D+LDISKIE+G ++L    V + +  
Sbjct: 375 LAET-----DEAELRHVYMSLVQENNELLLNLISDILDISKIEAGMIDLVMGRVDVPQLC 429

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
            E I+       +  + +R    +    I AD   + Q+  N L+NA+ FT  G  I +S
Sbjct: 430 REVIATFSHKKRDSAVELRFDENSPQIVIDADKNRIVQVLSNFLTNALKFTTKGS-ITLS 488

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
            +     +V   V DTG G+ + +  +    F ++ +      +G GLGL + +++V   
Sbjct: 489 YSLEDESQVRFCVTDTGKGIPDEQKHEIFNRFVKLDSF----VQGAGLGLSICQSLVKRM 544

Query: 789 MGKFYIFSTPAKGTLIEIIFP 809
            GK  + S   +G+      P
Sbjct: 545 GGKIGVESREGEGSCFWFTHP 565


>gi|307153079|ref|YP_003888463.1| multi-sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7822]
 gi|306983307|gb|ADN15188.1| multi-sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7822]
          Length = 679

 Score =  301 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 89/434 (20%), Positives = 174/434 (40%), Gaps = 52/434 (11%)

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINK--RKMEIEVMQLCSILEATSDGIAIINREGI 473
           I      +  E +       E ++    +   +M  E  +L +++   +DG  +++    
Sbjct: 238 IDLPLGGELGELICSFNEMAERLERYEEQNIEEMTAEKAKLDTLVSTIADGAILLDTNLQ 297

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ---------- 523
           +L  N A  +LF +  +D++ +             +   L +    +  +          
Sbjct: 298 LLLVNPAARRLFSWENKDVIGRNVLHLFPPELTVTLTEPLYQFAVGEQIESHEIHFQGSS 357

Query: 524 -----------TLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKN 569
                        E     S    + + + +      +       ++T+ DI+       
Sbjct: 358 QLTIHQEMHSTPGEFRVTLSHPSPRTVRILLTQVFDQYRETVKGIAMTVQDITR------ 411

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
                     + +  KS F++ VSHE+RTPL  I  F E +  +    L      E+   
Sbjct: 412 --------EVELNEAKSQFISNVSHELRTPLFNIKSFIETL-TEFGDDLTESERREFLET 462

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
            +   + +  +VND+LD+S++ES ++  HF+ V L + + + +   QL A +K I +   
Sbjct: 463 ANHETDRLTRLVNDVLDLSRLESSRI-YHFDAVDLGQLIDQTLRTYQLNAKDKNIELYQE 521

Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST--------THTSNEEVILRV 741
              N+P +L     + Q+  N++ N++ FT SGG+I+I                +V + V
Sbjct: 522 IEANLPTVLGHYDLLLQVITNLVGNSLKFTESGGRIVIRAYKLRPKSEHSRKASQVRIEV 581

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV-DANMGKFYIFSTPAK 800
            DTG+G+   + +     F ++ N +    EGTGLGL + K +V + +  K ++ S    
Sbjct: 582 SDTGIGIDAEDQQAIFDRFFRVEN-RVHTLEGTGLGLSIVKNIVEEKHRSKVHLISEVGV 640

Query: 801 GTLIEIIFPLYDTS 814
           GT       +Y  S
Sbjct: 641 GTTFWFELDVYQDS 654


>gi|148655756|ref|YP_001275961.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp.
           RS-1]
 gi|148567866|gb|ABQ90011.1| PAS/PAC sensor signal transduction histidine kinase [Roseiflexus
           sp. RS-1]
          Length = 899

 Score =  301 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 108/693 (15%), Positives = 240/693 (34%), Gaps = 64/693 (9%)

Query: 127 IDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHV 186
           +D    +   L         T      G        LA  P+   N +  G+   G+   
Sbjct: 250 LDMPPQVLQALLNGQAQSIFTVELRQRGYQ------LAYSPLVIANVQV-GYFSVGLSRD 302

Query: 187 NRVDNDPR-ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE 245
            +V                     +  G+    +    +    +    +   +  +  T 
Sbjct: 303 FQVQQLSLSRNIVTAIAIVLATGSVILGYQIARRITRPLADLVATAEAVTGGDLEARTTV 362

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
               +   L      +            D +         K     +++   ++      
Sbjct: 363 MSPDEFGRLALAFNQMTEHLARLYRTSRDLNQAIEVTPVLKVAERAVRSLLPDADVLALI 422

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDD---IEI 362
               +L  + DEG      ++    +P        +     + LL ++ +       +  
Sbjct: 423 AEEGALRYHVDEGLPAIVRSLRHVRVPVSDPLVREISETQQAVLLSSQDEPRLTAFGLTQ 482

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
             G  +LL +P +  +     +++   +      S     +                   
Sbjct: 483 VAGYQSLLLSPLVVQDEPAGVLIIAHREPAAFTGSVLPSVV------------------- 523

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
               NM  + +    +  R+ +  +        +ILE+ +DG+ +++R+  IL  NRA  
Sbjct: 524 -AIANMTTSVLYNAVLFDRVQREALRR-----RAILESIADGVVVLDRQRRILIVNRAAE 577

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
           ++ G     ++++ F+       P        E+ S +     +   LG    +++L L 
Sbjct: 578 QMLGMSDWRLVQRSFSDI-----PLTRVEVRHEMFSENGATQRDLYRLG----DRVLRLS 628

Query: 543 IIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
                    +     + +HDIS                      K+DF+A +SHE+R+PL
Sbjct: 629 HAPVTTDEGTQIGEVVVLHDIS--------------AEVAVDQAKTDFIATISHELRSPL 674

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
           T I G+++++     G L      +    +     L+ +IV +++ ++ IE+  +   F 
Sbjct: 675 TVIYGYTDLLLRGMVGELSGE-QRDLLEAVRNRVELMNNIVRNVIMVASIEANTLQTDFA 733

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720
              +   + EA++ ++    +K + +  +  +++P + AD   +  I   ++ NA  +T 
Sbjct: 734 AQDVRRMIDEAVAPMRKSFEKKGLALTVTTPDDLPPVRADREQLLIILGQVIDNARRYTQ 793

Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
            G ++ I+     N  V + V DTG G+    + +    F ++  +      G+GLGL +
Sbjct: 794 QG-EVTITAHQRDNGMVQIDVSDTGPGIPADAMNRLFTRFFRVEGNNSPE-RGSGLGLVI 851

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
            + +V+ + GK +  S   +G+   I  P+   
Sbjct: 852 TRQLVERHGGKVWAHSEVGRGSTFSIALPIAHE 884


>gi|313634988|gb|EFS01372.1| sensor protein kinase WalK [Listeria seeligeri FSL N1-067]
          Length = 610

 Score =  301 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 80/397 (20%), Positives = 166/397 (41%), Gaps = 27/397 (6%)

Query: 424 FPENMPQNGIEPEDVDTRINKRKM--EIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
             + + +       +  R+ + +   E E  +L S+L   +DG+   +R G ++  N   
Sbjct: 236 GVDEIGELADSFNTLTKRVQEAQAMTEGERRKLSSVLAYMTDGVIATDRRGKVILINTPA 295

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
            K+     E    +     L+          +    SL + ++                 
Sbjct: 296 EKMLRVKHESANGRSIIDVLDIGDNFQFEDLMEVDGSLTMDRSTSDKPYILRAN-----F 350

Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
            +I ++  F++     +HDI++ ++   +              + DF++ VSHE+RTPLT
Sbjct: 351 SVIQRETGFNNGVIAVLHDITDQEKVDQE--------------RRDFVSNVSHELRTPLT 396

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           ++  + E + +  +          +          ++ +VNDLL +S+++ G+  L    
Sbjct: 397 SMHSYLEALSDGAW--EDKEIAPRFLEVTQNETERMIRLVNDLLKLSRMDGGREQLEKSF 454

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           V+  +  +  I        ++ I+ +         I  D   V Q+  NI+SNA  ++P 
Sbjct: 455 VNFTDFFNHIIDX-XXMMKKETIMFKRHIPKEPVIIEIDEDKVMQVLDNIISNANKYSPD 513

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           GG+I        N E+ + + D G+G+ + +L      F ++  ++     GTGLGL +A
Sbjct: 514 GGRISFYLKKYEN-EIEVSIADEGLGVPDEDLATIFDRFFRVDKARSREMGGTGLGLAIA 572

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
           + +++A+ G+ +     +KGT+I+   P   +  P D
Sbjct: 573 REVIEAHGGRIWAERNKSKGTIIKFTLP--YSDLPED 607


>gi|90418236|ref|ZP_01226148.1| putative PAS sensor histidine kinase/response regulator
           [Aurantimonas manganoxydans SI85-9A1]
 gi|90337908|gb|EAS51559.1| putative PAS sensor histidine kinase/response regulator
           [Aurantimonas manganoxydans SI85-9A1]
          Length = 1067

 Score =  301 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 107/762 (14%), Positives = 217/762 (28%), Gaps = 69/762 (9%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD-ILHIDPNNHIGDLLKRQNTWYGKT 147
           +D    + +++ E  +       +++G    ++       +        +  +     + 
Sbjct: 192 LDREFRVIDLNVEAQRIESRPREELVGHLHWELYPGTEDSELGRQYKKAMSERVPVALEY 251

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                +G    V ++  A P+        G   F             A+ +   +++   
Sbjct: 252 RHVWPDGRP--VWVEARAYPVED------GLAVF--FRDVTEQKQTEAVARETAERYRLA 301

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPP-------PHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
                          +               P          +   +      +    + 
Sbjct: 302 VRATNDAIWDWHFASNHVLWNEALETAYGHKPEDVEPTGEWWIGRIHPEDRARVDASIHA 361

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES----FEYLSHRNHPSLSAYFD 316
            +   E+S  ++  F   + +          ++++S ++       L         A   
Sbjct: 362 AIDGTETSWVDEYRFLRADGSYADVLDRGHVIRDDSGQAVRMLGAMLDLTEQRRNQAALR 421

Query: 317 EGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
           E E       +  P+  F     G   Y NP     T   S + +   G    L    + 
Sbjct: 422 ESETRFRTFAEALPLVLFTTDADGRYDYTNPFLQAFTGM-SAEALAGFGWSEALHPDDRA 480

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
                                       + +      +      +A Q    +   G   
Sbjct: 481 RALAVWDERRAA-----EEPFEIEYRLRRDDGVYRWFLGRCVPARAAQEGAALRWIGTCV 535

Query: 436 EDVDTRINKRKMEIEVMQLCSIL-------EAT----SDGIAIINREGIILSTNRAVSKL 484
           +  D    +     +   L  ++       +      +D + +   +G IL+TN A + L
Sbjct: 536 DMQDIVEARDAKARQSEDLERLVAERTADRDRMWRLSTDLMLVARFDGTILATNPAWTTL 595

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
            G+   D++   F   +  +           +       TL       T++   + L   
Sbjct: 596 LGWDEADLVGTSFLDLIHPDDTEATQAEAARLSEG--LSTLRFENRYRTRDGSYVWLSWT 653

Query: 545 IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES--SHKSDFLARVSHEIRTPLTA 602
                          D++  K    +L  A++   +             ++H+    L  
Sbjct: 654 AVP--DEQFIHAVARDVNAEKDAAAELERAQEALRQSQKMEAVGQLTGGLAHDFNNLLAG 711

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           I G  + +   R           Y      +      + + LL  S+    +  L  +P 
Sbjct: 712 ISGSLD-LMGTRLAQGRLSEADRYLVAAQGAAKRAAALTHRLLAFSR----RQTLDPKPT 766

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
           +    +S    L++       I + +     +  IL D   ++   LN+  NA    P G
Sbjct: 767 NTGTLISGMEELIR-RTVGPAIGVESVGGGGVWSILVDPNQLENALLNLCINARDAMPDG 825

Query: 723 GQIIISTT-------------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
           G+I I T                  + + L V D G GMT   +EKA  PF         
Sbjct: 826 GKITIETANRWLDGRAARERDLAPGQYISLCVSDNGSGMTPDVVEKAFDPFFTTKP---- 881

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
            G GTGLGL +       + G+  I+S   +GT++ I  P Y
Sbjct: 882 IGMGTGLGLSMIYGFARQSGGQVRIYSELGQGTMVCIYLPRY 923



 Score =  152 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 37/502 (7%), Positives = 122/502 (24%), Gaps = 17/502 (3%)

Query: 94  YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTW-YGKTTLWPI 152
                ++   + + +     +G    +V   +  D    +      +       T     
Sbjct: 69  RTLIYNDAYSEILASKHPAGLGRDFLEVWQEIRADLVPIVDQAYAGEPVHMDDITLHMQR 128

Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212
            G         +  P+       +GF  F   +            +  + +   + +   
Sbjct: 129 RGYLEETHFSFSYTPVRDETGAIAGF--FCPCNEITGQVLAERRLRESEARAKGVLDGMG 186

Query: 213 GHSSVEKEKYDIFSQQSPPPHL--RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270
              ++   ++ +         +  R + ++     +  +              +    +P
Sbjct: 187 EGFALLDREFRVIDLNVEAQRIESRPREELVGHLHWELYPGTEDSELGRQYKKAMSERVP 246

Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330
              ++  +  +                 +  +          A   E        V    
Sbjct: 247 VALEYRHVWPDGRPVWVEARAYPVEDGLAVFFRDVTEQKQTEAVARETAERYRLAVRATN 306

Query: 331 IPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389
              + +    N    N +      +K  D           +      D   +   +    
Sbjct: 307 DAIWDWHFASNHVLWNEALETAYGHKPEDVEPTGEWW---IGRIHPEDRARVDASIHAAI 363

Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449
           D T  +       ++ +   +  +        +   + +   G   +  + R N+  +  
Sbjct: 364 DGTETSWVDEYRFLRADGSYADVLD-RGHVIRDDSGQAVRMLGAMLDLTEQRRNQAALRE 422

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
              +  +  EA    +   + +G    TN  +    G   E +    ++  L  +  +  
Sbjct: 423 SETRFRTFAEALPLVLFTTDADGRYDYTNPFLQAFTGMSAEALAGFGWSEALHPDDRARA 482

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-----CYSLTMHDISEW 564
                E  +    +  E        +               +       +  T  D+ + 
Sbjct: 483 LAVWDERRA--AEEPFEIEYRLRRDDGVYRWFLGRCVPARAAQEGAALRWIGTCVDMQDI 540

Query: 565 KQEKNKLSHAKKIAEKESSHKS 586
            + ++  +   +  E+  + ++
Sbjct: 541 VEARDAKARQSEDLERLVAERT 562



 Score = 76.2 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/276 (9%), Positives = 65/276 (23%), Gaps = 18/276 (6%)

Query: 69  DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID 128
           +SE  F        +   +  DA G     +  L    G  A  + G    +        
Sbjct: 422 ESETRFRTFAEALPL-VLFTTDADGRYDYTNPFLQAFTGMSAEALAGFGWSEALHPDDRA 480

Query: 129 PNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN- 187
               + D  +     +        +   +Y       +P  +   E +  R  G      
Sbjct: 481 RALAVWDERRAAEEPFEIEYRLRRD-DGVYRWFLGRCVPARAAQ-EGAALRWIGTCVDMQ 538

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS------ 241
            +     A  ++ +     + E       + +   D+         +   N         
Sbjct: 539 DIVEARDAKARQSEDLERLVAERTADRDRMWRLSTDLMLVARFDGTILATNPAWTTLLGW 598

Query: 242 --------SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293
                   S  +     D      +   L+   S+L  +  + T + +           +
Sbjct: 599 DEADLVGTSFLDLIHPDDTEATQAEAARLSEGLSTLRFENRYRTRDGSYVWLSWTAVPDE 658

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
                    ++     +      +      + ++  
Sbjct: 659 QFIHAVARDVNAEKDAAAELERAQEALRQSQKMEAV 694


>gi|307319436|ref|ZP_07598863.1| PAS/PAC sensor signal transduction histidine kinase [Sinorhizobium
           meliloti AK83]
 gi|306894808|gb|EFN25567.1| PAS/PAC sensor signal transduction histidine kinase [Sinorhizobium
           meliloti AK83]
          Length = 531

 Score =  301 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 111/469 (23%), Positives = 198/469 (42%), Gaps = 15/469 (3%)

Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
            +  L    +   +   GGL + +         A+  V L       +  +  L      
Sbjct: 10  RWTSLVDEAAAPWLPR-GGLGSAIARHDFRRLRAVAAVSLTAL--PIVPLALTLALPVSA 66

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
              + A  +                    +         ++      L +  +  +  + 
Sbjct: 67  ALPAGAALWASASLLAAAAAIAGGREFSTDGEVEFAPAPELPD----LNAAYDLFAGLVT 122

Query: 467 IINREGIILSTNRA-VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
           + +  G +LS +    S+      +    + F   +  +        +  +     R  +
Sbjct: 123 VHDTRGHVLSVHGRDASEYLKLMRDP-HGRGFIEQIHVSDRIAFLRAIDSLRLDSERSAV 181

Query: 526 EKITLGSTKEE-KLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEK 580
           +     ++ +  +   +   +  L  +            D+SE  + + + +     AE 
Sbjct: 182 DIRLERTSADGPQFAHIYCEMTPLRDAEGNLLAIVAQSRDVSEEARLQAEAAAKAAHAES 241

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            +  K+ FLA VSHE+RTPL AI+GFS+V+  + FG L N R  EY + I +SG  +L +
Sbjct: 242 ANDAKTRFLAAVSHELRTPLNAILGFSDVLAGEYFGKLENDRQREYVSLIHQSGTHLLSV 301

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILAD 700
           VN +LD+SKIE+G+  L  EP  + EA++   +++   A EK + + +    ++  I AD
Sbjct: 302 VNTMLDMSKIEAGRYELLLEPFRVAEAIAACEAMLSHQAREKGVRLTSRVTRSVGEINAD 361

Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760
            R+ +QI +N++ NAI FT  GG + +         + L V DTG+G+   +L+   +PF
Sbjct: 362 QRAFQQILINLIGNAIKFTDRGGLVTVDAALE-GNMLKLTVSDTGIGIAADKLQMLGQPF 420

Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            QI N    R EGTGLGL L K + + + G   I S   +GT+I +  P
Sbjct: 421 VQIQNDYTRRYEGTGLGLSLVKGLAELHGGDVSIRSAEGEGTVIVVTIP 469


>gi|296502147|ref|YP_003663847.1| sensor protein ResE [Bacillus thuringiensis BMB171]
 gi|296323199|gb|ADH06127.1| sensor protein resE [Bacillus thuringiensis BMB171]
          Length = 580

 Score =  301 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 80/371 (21%), Positives = 153/371 (41%), Gaps = 39/371 (10%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            ++ E  QL SIL + +DG+  +N+EG ++  N           E+       + L +  
Sbjct: 238 ALQQEKEQLASILSSMADGVITLNQEGEVVVINPPAEHFLQVWQEEK-----EIELSKKL 292

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
           PS +      ++  + +Q +E        +   + L   +            + D++E +
Sbjct: 293 PSELVELFHLVVESEQQQVVEINLQ----KGNYVVLMTPLYNQTKIRGAVAVLRDMTEER 348

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + +                + DF+A VSHE+RTP+  + G+SE I +            E
Sbjct: 349 RLE--------------KMRQDFIANVSHELRTPMVMLQGYSEAILDDIVQT--KEEIDE 392

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           +   I      +  +VN+LLD++++ESG + LH   V +   V +     Q  A +K + 
Sbjct: 393 FVQIIYDESVRLGKLVNELLDLARMESGHVELHIGEVDIHPFVEKIGRKFQGIAKDKEVA 452

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +   F   I +   D   ++Q+  N++ NAI  T +GG + +     +N  +I  V+D+G
Sbjct: 453 LTVDFKGPIEQYPFDADRMEQVLTNLIDNAIRHTNAGGHVTLVIDTKNNG-LIFEVQDSG 511

Query: 746 VGMTNYELEKAMKPFGQIPNSQQI-------RGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
            G+   ++      F +   ++          G        +AK +V  + GK  + S  
Sbjct: 512 AGIPEEDIPFLFDRFYKADKARTRGKKGGTGLGL------AIAKNIVQGHDGKISVSSVV 565

Query: 799 AKGTLIEIIFP 809
            +GT   +  P
Sbjct: 566 GEGTTFSVYLP 576


>gi|298528267|ref|ZP_07015671.1| integral membrane sensor hybrid histidine kinase
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511919|gb|EFI35821.1| integral membrane sensor hybrid histidine kinase
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 809

 Score =  301 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 88/340 (25%), Positives = 159/340 (46%), Gaps = 20/340 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +F Y VE I+ +P               Y  ++      +      L          ++ 
Sbjct: 336 MFAYGVERIVLRPLNKLHNSADALARGEYDVDLPPAGSDEVGG---LTRAFSGMARKIKS 392

Query: 544 IIKKLPFSSCYSLTMHDIS-EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
             ++L         + + + E +++ ++L  A+  AE  +  KS+FLA +SHEIRTPL  
Sbjct: 393 HTRELEDR------VRERTGELEEKSSQLEAARDKAETANRAKSEFLANMSHEIRTPLNG 446

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           I G  ++++  R     +    EY +    S + +  +++D+LD+S++E+G+M +  E  
Sbjct: 447 ITGMMQLLQTTRL----DSNQKEYVDLALSSASRLTRLLSDILDLSRVEAGRMVILEEEF 502

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPS 721
           ++ E       L ++ A EK I +  +   ++P R++ D   ++QI  N++ N++ FT  
Sbjct: 503 NVQELCRSVCELFRIQAGEKGIELEYTLDPSLPSRLMGDETRLQQILFNLVGNSLKFTRE 562

Query: 722 GGQIIISTTHT----SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
           G ++ I+ T         +V++ V DTG G+   +L+   +PF Q   S   R EG GLG
Sbjct: 563 G-RVRINWTLQKRGLDRHQVLITVTDTGSGIAPEKLDDLFQPFVQEDGSSTRRHEGAGLG 621

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
           L +   +VD   G   + S P +GT   I  PL   + P 
Sbjct: 622 LSIVSRLVDLMHGTISVDSAPGEGTAFYIFLPLKVPAAPE 661


>gi|304439016|ref|ZP_07398936.1| sensor histidine kinase YycG [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304372505|gb|EFM26091.1| sensor histidine kinase YycG [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 593

 Score =  301 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 79/365 (21%), Positives = 151/365 (41%), Gaps = 31/365 (8%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           ++E+E  +L +I +  ++G+  I+R   ++  N    K+       +        +    
Sbjct: 256 RLELERSKLNTIFDYMAEGVVAIDRNRRLVHANPIARKILSLSKNHVGSVVDFSMVNIKD 315

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-CYSLTMHDISEW 564
                             TL        K+     ++    K         + + DI+E 
Sbjct: 316 IDF-----------KDVSTLSGEVNAQIKD-VFYKVKYAPYKSEGRVLGVIVVLQDINE- 362

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
                          +    + +F+A VSHE++TP+T I  ++E + +     +      
Sbjct: 363 -------------EHRLDVMRREFVANVSHELKTPITTIGSYTETMLD---VDMDLDSIR 406

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
            +   IDR  N +  +V DLL +S ++  +   ++E V   + +S  I+ + +   EK  
Sbjct: 407 NFLRVIDRENNRMARLVTDLLQLSNMDYKETKWNYEAVDTYDFLSTNINSLDMLIKEKHH 466

Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744
            +      +I  +  D     Q+  NI SNA+ +T  GG+I + T  +    V + V D 
Sbjct: 467 KVTLDVPMDINSMYVDRHGADQVFRNIFSNALKYTRKGGEIKV-TAKSEGASVEIIVEDN 525

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G+   +L K  + F ++  S+     GTGLGL +AK ++++  G+  I S    GT +
Sbjct: 526 GIGIQREDLNKIFERFYRVEKSRSREMGGTGLGLSIAKEILESMGGRISIESEIGVGTKM 585

Query: 805 EIIFP 809
            + FP
Sbjct: 586 TLRFP 590


>gi|213646233|ref|ZP_03376286.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Typhi str. J185]
          Length = 961

 Score =  301 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 98/426 (23%), Positives = 172/426 (40%), Gaps = 35/426 (8%)

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
           +     L  I+      L +  I                 E        +  +   E  Q
Sbjct: 303 VPVDLVLERIR-----ILILNAILLNVLVGAGLFTLARMYERRIFIPAESDAQRLEEHEQ 357

Query: 454 L-CSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
               I+ +   GI I+   +G+ + +N            +  ++                
Sbjct: 358 FNRKIVASAPVGICILRTIDGVNILSNELAHTYLNMLTHEDRQR---------------- 401

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571
            LT+I+       ++      T     L +  +  +    +     + D+S   + +  L
Sbjct: 402 -LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSTRVKMEESL 456

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
               + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R       ++
Sbjct: 457 QEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR---LVTAMN 512

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
            S +L+L I++D+LD SKIES ++ +     S  E ++   +        K++ +     
Sbjct: 513 NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFIE 572

Query: 692 NNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
            ++P  +  D   ++Q+  N+LSNAI FT  G  I++       + + +RVRDTGVG+  
Sbjct: 573 PDVPVSLNGDPMRLQQVISNLLSNAIKFTDIG-CIVLHVRC-DGDYLSIRVRDTGVGIPA 630

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+   +  PL
Sbjct: 631 KEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTLRIPL 690

Query: 811 YDTSHP 816
           Y   +P
Sbjct: 691 YGAQYP 696


>gi|47567925|ref|ZP_00238632.1| sensor histidine kinase, putative [Bacillus cereus G9241]
 gi|229157216|ref|ZP_04285296.1| hypothetical protein bcere0010_34000 [Bacillus cereus ATCC 4342]
 gi|47555403|gb|EAL13747.1| sensor histidine kinase, putative [Bacillus cereus G9241]
 gi|228626280|gb|EEK83027.1| hypothetical protein bcere0010_34000 [Bacillus cereus ATCC 4342]
          Length = 510

 Score =  301 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 98/529 (18%), Positives = 198/529 (37%), Gaps = 39/529 (7%)

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTK 353
           +S +   + +                +     +  P     +   G + + NPS   +  
Sbjct: 7   SSTQRKRHPNISRRLRNHIQDRSLTEMYASLFEHNPDGIISLNLEGIIIHTNPSAERILG 66

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
           Y S + +E     S L       + +  + V+    +         + +I       L +
Sbjct: 67  YTSSE-LERKSITSIL-------EAHISEQVLQNIKNTKADNQHEYILSIYHKNGFLLDV 118

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
                    Q         ++P +   RI ++ ++    +L +++ +    +   + EG 
Sbjct: 119 VTKLVPIFVQNRLTGVYAIMKPLEKSERI-EKMLKESEKRLRTLVNSMPAFVIFKDHEGR 177

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN----HYLTEILSLDLRQTLEKIT 529
            L  N      F +       K  +  ++ N            + E+     RQ L    
Sbjct: 178 WLEANDYALSCFNFHHVPYRGKKDSELIQYNEAYREAFLHCEEVDELAWQ-QRQILHGEE 236

Query: 530 LGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
               +++  L L I    L           +   D++E K+ +  L  ++K+A       
Sbjct: 237 FIIHRDDFDLILSISKVPLYHPDGSRKGLIVMGRDVTELKETEKLLRKSEKLAVV----- 291

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
               A ++HEIR PLT++ GF  ++      P  N     Y + +    + +  I +  +
Sbjct: 292 GQLTAGIAHEIRNPLTSLKGFLTLLL-----PEINEEQKWYIDVMLSEISQMESITSQFM 346

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
            +SK +     L     ++   + E ++ +   A    + I     + +  I  D   +K
Sbjct: 347 AMSKPQ----VLAIHTCNMQTLIEEVVTFILPTAIMHSVHIIMDHFDYVYDIQCDGNQLK 402

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           Q+ +NIL NAI   P+GG I I T    +  +++R+ D G G+    + +  +PF     
Sbjct: 403 QVFINILKNAIEAMPNGGNIFIQTKPLEDNFILIRIIDEGCGIPEDRISRLGEPFY---- 458

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
              ++ +GTGLGL +   +++ + GK +I S   KGT+++I  PL  + 
Sbjct: 459 --SLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTIVDIQLPLSSSH 505


>gi|322421775|ref|YP_004200998.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M18]
 gi|320128162|gb|ADW15722.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M18]
          Length = 667

 Score =  301 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 95/562 (16%), Positives = 189/562 (33%), Gaps = 70/562 (12%)

Query: 285 KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV--YSHGNLF 342
            +     LQ       E    + +        E        +D      F+     G++ 
Sbjct: 7   PQDALEALQRKLAGFGETSVRKTYYPELQDRLEELERLRAFLDHSNDAIFLVQAQTGHIV 66

Query: 343 YANPSFLLLTKYKSVD----------DIEIAGGLSTLLDAPKLSDNNAIKPVM-LYRSDR 391
             N S    T +   +          D+E      +L+ +P+  D      V  L+R D 
Sbjct: 67  DLNDSASRQTGWSRGELLEKSLFDVSDLEQIPAAVSLICSPEQGDEVRDLIVSDLHRKDG 126

Query: 392 TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV 451
               A   L+ + +                           +  +    R  +  +    
Sbjct: 127 GRFCAELTLNRMHFRDR-------------------AYVLAVARDITHRRAMEEALRESE 167

Query: 452 MQLCSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
             L +I++     +      E  I++ N+   +L G+  ++IL K               
Sbjct: 168 EFLKNIVDHIPAMVFAKEAKELRIITVNKYGEELLGFSRKEILGKNDHDLFPPEQADFFI 227

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQ 566
               E L       + + T+ +   +++  L      L               DI+E KQ
Sbjct: 228 RKDRETLEKGELVDIPEETISTPAGDRI--LHTKKIPLLDDQGKARYLLGIAEDITERKQ 285

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
            + KL  ++K+              V+H+    L  I+G+  +++N      G+    E 
Sbjct: 286 LEEKLLQSQKM-----EAVGQLAGGVAHDFNNILMVIMGYGSMLRNDDTLASGH---REK 337

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
            + I  + +    + + LL  S+    K  +  +   L++ +      +      + + +
Sbjct: 338 IDRIMDAADKAAQLTSGLLTFSR----KQVIKTQTADLNDVIQHVEKFLS-RIIGEDVQL 392

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-------------- 732
           +   A +   +  D   ++Q+ +N+ +NA    P GG + + T+                
Sbjct: 393 KALLARHPLPVEIDSNQIEQVLVNLATNARDAMPHGGLLTVETSLQRIDGAFVDANGIGA 452

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
                ++ V DTG+GM +    K  +PF    +     G+GTGLG+ +A  ++  + G  
Sbjct: 453 PGPYAVISVSDTGIGMDDATRRKIFEPFFTTKD----VGKGTGLGMSIAYGIIKQHSGFI 508

Query: 793 YIFSTPAKGTLIEIIFPLYDTS 814
            ++S P  GT   I  PL  TS
Sbjct: 509 NVYSEPGLGTTFRIYLPLSATS 530



 Score = 39.2 bits (90), Expect = 2.9,   Method: Composition-based stats.
 Identities = 11/113 (9%), Positives = 30/113 (26%), Gaps = 9/113 (7%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID-PNNHIGDLLKRQNTW--YGKTT 148
              +  +++   + +G    +++G    D+      D       + L++        +T 
Sbjct: 188 ELRIITVNKYGEELLGFSRKEILGKNDHDLFPPEQADFFIRKDRETLEKGELVDIPEETI 247

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
             P     L+       +P+     +     G  I               +  
Sbjct: 248 STPAGDRILHT----KKIPLLDDQGKARYLLG--IAEDITERKQLEEKLLQSQ 294


>gi|209695063|ref|YP_002262992.1| response regulator, histidine kinase [Aliivibrio salmonicida
           LFI1238]
 gi|208009015|emb|CAQ79245.1| response regulator, histidine kinase [Aliivibrio salmonicida
           LFI1238]
          Length = 697

 Score =  301 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 91/373 (24%), Positives = 167/373 (44%), Gaps = 18/373 (4%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           +++ +   +     E+  D     +        + +           I  +     +  N
Sbjct: 198 KELHLSNDRFKDFAESAGDWFWETDLGFNFTYISDST-----IKTIVITDRNLLTLI--N 250

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGST-KEEKLLSLRIIIKKLPFSS--CYSLTMHDI 561
                +  L+      ++   E     S  K++  +S+              Y  T  DI
Sbjct: 251 DNPTTSQILSS--KSMVKSFDELEWWPSIFKQQVCMSISGTPYFDDAGQLIGYRGTAKDI 308

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           S  K+   ++  AK+ AE  +  KS FLA +SHEIRTPL AI+G  +V        L + 
Sbjct: 309 SIRKKRLQQIQKAKQEAETANKAKSQFLAMMSHEIRTPLNAILGMVDVFNE----SLLSK 364

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
              E+ + ++ S  L+L I++D+LDIS+IE+G   L  +P+ L E +  + +  +  + +
Sbjct: 365 EQYEWLDQMEVSAQLLLAIISDVLDISRIEAGTFVLDEQPIDLLETIINSTNYFKEKSKD 424

Query: 682 KRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
           K I +  + ++++P  ++AD   + QI  N++ NA+ FT  G  I I+ T T      + 
Sbjct: 425 KGINLTVTVSHSVPNYVIADAARIMQIIFNLVGNAVKFTKKGS-IWINITQTECNSTKIA 483

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           + DTG+G++   L    +PF Q  +S   +  G+GLGL + K + +   G   + S   +
Sbjct: 484 ITDTGIGISKDVLNNLFQPFVQADSSITRQFGGSGLGLSIIKRLTELMNGVISVKSVINE 543

Query: 801 GTLIEIIFPLYDT 813
           G+   +  P  +T
Sbjct: 544 GSTFTVTLPFKET 556


>gi|298244001|ref|ZP_06967808.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297557055|gb|EFH90919.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 571

 Score =  301 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 86/447 (19%), Positives = 185/447 (41%), Gaps = 26/447 (5%)

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
                +  +   R   T          I   +           E   +            
Sbjct: 138 DAAGPLGTLHFLRPTGTRSCFEVHEEKIGARQGTRTY-DSDAEEGGEENATLRMFIVQLA 196

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
             +      + +  E  +L SI   +++ +  ++    I+  N A+ KL G+   ++L +
Sbjct: 197 ASLRCAFKAQALVSEQERLASIFRYSTESLLTVDSALRIIDFNPAMEKLTGWRESEVLGE 256

Query: 496 PFTVFLEQNTPSVMNHYLTE---ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
            +   L           L E   + +   +  + +  + +T++   + +R+    +  + 
Sbjct: 257 LYFSVLRPRDRQGNELSLQESPILQAFAGQPVVNREIIFTTRDGLPVDVRVTASCVRSAR 316

Query: 553 CY----SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                  LT+HDI+  ++++                +S F++ VSHE++TP+  I G++ 
Sbjct: 317 GEPLNGFLTVHDITLEREQEE--------------QRSTFISVVSHELQTPIAIIKGYAS 362

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
            +       L           I+   + +  +V +LL  S+I++  + +   P+ L+  +
Sbjct: 363 TLAR-AGSRLAPQALQTRLVAIEEEADRLNKLVGNLLYASRIQANGLQMEIAPLDLEPLI 421

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
              +  +++      +      + ++P ++AD   ++++  N+L NAI ++    +I IS
Sbjct: 422 ETVVRRLKIRYA--DLQATLEISPDLPSVMADRERIEEVLQNLLDNAIKYSSGQLKITIS 479

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
              TSN EVI+ VRDTG+G++  + E+  K F +I N       GTGLGL + +A+V+A+
Sbjct: 480 ARATSN-EVIVSVRDTGMGISLRDQEQIFKRFRRIGNPLAQSTPGTGLGLYICRAIVEAH 538

Query: 789 MGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            G+ ++ ST  +G+      P    + 
Sbjct: 539 GGRIWVESTLRQGSTFSFSLPREKQAQ 565



 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/234 (11%), Positives = 66/234 (28%), Gaps = 16/234 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID------PNNHIGDLLKRQNT 142
           +D+   + + +  + K  G    +++G     V               + I      Q  
Sbjct: 229 VDSALRIIDFNPAMEKLTGWRESEVLGELYFSVLRPRDRQGNELSLQESPILQAFAGQPV 288

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR--- 199
              +      +G  + V +  +   + S   E     GF  VH   ++ +          
Sbjct: 289 VNREIIFTTRDGLPVDVRVTASC--VRSARGEP--LNGFLTVHDITLEREQEEQRSTFIS 344

Query: 200 --LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257
               +  + +  IK   S++ +    +  Q      + ++ +   L +   +        
Sbjct: 345 VVSHELQTPIAIIKGYASTLARAGSRLAPQALQTRLVAIEEEADRLNKLVGNLLY-ASRI 403

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
           +   L  E + L  +    T+      +          S +    ++ R     
Sbjct: 404 QANGLQMEIAPLDLEPLIETVVRRLKIRYADLQATLEISPDLPSVMADRERIEE 457



 Score = 43.1 bits (100), Expect = 0.23,   Method: Composition-based stats.
 Identities = 23/276 (8%), Positives = 63/276 (22%), Gaps = 14/276 (5%)

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
                     E      +  ++     +    P      +++   +         L T  
Sbjct: 88  ARRVYSEEQVESNGTQGASGEQCEPEAAASPGPEEDASWHELEGCSLAVFDAAGPLGTLH 147

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYT----KKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
           +   T   S     E+         T     ++             +  +       +  
Sbjct: 148 FLRPTGTRSCFEVHEEKIGARQGTRTYDSDAEEGGEENATLRMFIVQLAASLRCAFKAQA 207

Query: 315 FDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
               +                V S   +   NP+   LT ++  + +      S L    
Sbjct: 208 LVSEQERLASIFRYSTESLLTVDSALRIIDFNPAMEKLTGWRESEVLGELY-FSVLRPRD 266

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
           +  +  +++   + ++         R           + +        +   E +     
Sbjct: 267 RQGNELSLQESPILQAF-AGQPVVNREIIFTTRDGLPVDVRVTASCVRSARGEPLNGFLT 325

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEA---TSDGIA 466
             +       +R+ E +     S++     T   I 
Sbjct: 326 VHDITL----EREQEEQRSTFISVVSHELQTPIAII 357


>gi|229172215|ref|ZP_04299779.1| hypothetical protein bcere0006_13290 [Bacillus cereus MM3]
 gi|228611203|gb|EEK68461.1| hypothetical protein bcere0006_13290 [Bacillus cereus MM3]
          Length = 591

 Score =  301 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 81/371 (21%), Positives = 153/371 (41%), Gaps = 39/371 (10%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            ++ E  QL SIL + +DG+  +N+EG ++  N           E+       V L +  
Sbjct: 249 ALQQEKEQLASILSSMADGVITLNQEGEVVVINPPAEHFLQVWQEEK-----EVELSKKL 303

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
           PS +      ++  + +Q +E        +   + L   +            + D++E +
Sbjct: 304 PSELVELFHLVVESEQQQVVEINLQ----KGNYVVLMTPLYNQTKIRGAVAVLRDMTEER 359

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + +                + DF+A VSHE+RTP+  + G+SE I +            E
Sbjct: 360 RLE--------------KMRQDFIANVSHELRTPMVMLQGYSEAILDDIVQT--KEEINE 403

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           +   I      +  +VN+LLD++++ESG + LH   V +   V +     Q  A +K + 
Sbjct: 404 FVQIIYDESVRLGKLVNELLDLARMESGNVELHIGEVDIHPFVEKIGRKFQGIAKDKEVA 463

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +   F N I +   D   ++Q+  N++ NAI  T +GG + +     +N  +   V+D+G
Sbjct: 464 LTVDFQNPIEQYPFDADRMEQVLTNLIDNAIRHTNAGGHVTLVINTINNG-LTFEVQDSG 522

Query: 746 VGMTNYELEKAMKPFGQIPNSQQI-------RGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
            G+   ++      F +   ++          G        +AK +V  + GK  + S  
Sbjct: 523 AGIPEEDIPFLFDRFYKADKARTRGKKGGTGLGL------AIAKNIVQGHDGKITVSSVV 576

Query: 799 AKGTLIEIIFP 809
            +GT   +  P
Sbjct: 577 GEGTTFSVYLP 587


>gi|298528942|ref|ZP_07016345.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298510378|gb|EFI34281.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 468

 Score =  301 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 86/417 (20%), Positives = 170/417 (40%), Gaps = 41/417 (9%)

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
           + Q  +  ++ + +  + ++E    +   + +    G  + +  GII   NR  +++ G 
Sbjct: 48  VYQVELSIQNEELQAKQEQLERTSNEYRRLFDFAPVGFFVFDENGIIEDVNRYGAEMLGM 107

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
               +  KPF ++L+       + +   + S       +       +  + +  RI    
Sbjct: 108 DQRTLHGKPFMLYLDTTYQRAFSDHRRRVFS-KKPVAEDVSLKLKVQNSRGIWARIKSIA 166

Query: 548 LPFSS----CYSLTMHDISE----------------------------WKQEKNKLSHAK 575
           +             M DI+                              K+ + +L  ++
Sbjct: 167 VEHGDQKALRCFTAMQDITRQVEYSEKLLEMNRTLEGTNNMLRQEIEARKKVEQELIESR 226

Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
             AE  +  KS FLA +SHEIRTPL  I G  +++++       +    E       SG 
Sbjct: 227 DAAEAATKAKSGFLANMSHEIRTPLNGIFGMLQLMEDTSL----DEEQQELLQTAKASGR 282

Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695
            +L I++D+L+ + ++  +  L   P  L   V + I  ++  A +K + I+ S A ++P
Sbjct: 283 GILTILSDILEFAGLDQVEPRLENRPFDLRSVVQQTIQSLEASARQKGLGIKLSIAADLP 342

Query: 696 -RILADLRSVKQIALNILSNAIHFTPSGGQ---IIISTTHTSNEEVILRVRDTGVGMTNY 751
             +  D   V+QI  N+LSNA+ FT  G     + +  ++  +      + D+G G+++ 
Sbjct: 343 GEVCGDQARVRQILFNMLSNAVKFTQDGEIHLDVSLLRSYEDSILAGFALSDSGPGISDD 402

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            + +  +PF Q  NS   R  G GLGL +A+ +V    G   + +   +G+      
Sbjct: 403 LIFQVFQPFSQADNSFTRRHGGLGLGLSIARNLVKLMGGTIALDTEEGRGSTFYFTL 459



 Score = 39.6 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 20/203 (9%), Positives = 44/203 (21%), Gaps = 8/203 (3%)

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL-SA 313
           K+ +  L    E +    +++  ++      +     LQ  S    E             
Sbjct: 6   KSTRDRLQELREKAEKSLKEYDDLSGPASEFEDVQEVLQELSVYQVELSIQNEELQAKQE 65

Query: 314 YFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
             +   N      D  P+ FFV+   G +   N     +                 L   
Sbjct: 66  QLERTSNEYRRLFDFAPVGFFVFDENGIIEDVNRYGAEMLGMDQRTLHGKPFM---LYLD 122

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
                  +     ++         S +L          +          +   + +    
Sbjct: 123 TTYQRAFSDHRRRVFSKKPVAEDVSLKLKV---QNSRGIWARIKSIAVEHGDQKALRCFT 179

Query: 433 IEPEDVDTRINKRKMEIEVMQLC 455
              +         K+      L 
Sbjct: 180 AMQDITRQVEYSEKLLEMNRTLE 202


>gi|330836391|ref|YP_004411032.1| multi-sensor signal transduction histidine kinase [Spirochaeta
           coccoides DSM 17374]
 gi|329748294|gb|AEC01650.1| multi-sensor signal transduction histidine kinase [Spirochaeta
           coccoides DSM 17374]
          Length = 627

 Score =  301 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 101/590 (17%), Positives = 211/590 (35%), Gaps = 51/590 (8%)

Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303
            +     +      + P + SE++          +++      +      ++  +     
Sbjct: 38  ADSTLDGEARFLAARLPRMNSEDTIATLDSYAENLDIRITIVNENGIVTYDSEVDPSTMD 97

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIA 363
           +H     +      G  ++  +      P   Y       +N    ++     + ++   
Sbjct: 98  NHLWREEIQEALSTGSGVSSRSSGSMHTPML-YRAVKTTDSNGDIRIVRTSAPLVEL--I 154

Query: 364 GGLSTLLDAPKLSDNNAI------KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
              S             +        +ML    R     +A  H           +    
Sbjct: 155 AWRSVFYTLLIPLLLVFLVIAVLFTILMLRYLTRPIEQLAATAHEYH----QGNLLVRSS 210

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
            E   +  E         +++  RI   ++E +  Q  SIL + S+G+ +++   II+ +
Sbjct: 211 IEGPEELAELSATMNSMAKELAARI--SQLERDKQQYSSILSSMSEGLLLVDSRNIIVLS 268

Query: 478 NRAVSKLFGY---PVEDILRKPFTVFLEQNTP-SVMNHYLTEILSLDLRQTLEKITLGST 533
           N A + + G      + ++    +     +    ++   +             K   G T
Sbjct: 269 NNAANTMLGKGFPEAQSLVGAKLSEIFTDDDFLKLVATTMHSGKVGQTSIVKYKHLTGQT 328

Query: 534 ------KEEKLLSLRIIIKKLPFS-------SCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
                   E+   +   I                 +T  DI+E K+ +            
Sbjct: 329 ASLVGAGREQTFQVSTAIVPGMQEESGKAVTGGILITFTDITELKRLEQV---------- 378

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
               + DF+A VSHE++TPLTAI GFSE +     G + +     ++  I+R+   +  I
Sbjct: 379 ----RKDFVANVSHELKTPLTAINGFSETLLG---GMISSEDIGLFSKIINRNARQMQGI 431

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILA 699
           ++DLL ++ +E     L  +  +L+E V E        AN + +++ T+  +   R ++ 
Sbjct: 432 IDDLLLLASLEDDHAALTMKRCTLEELVKETCEDTSYRANSRSVILTTTVHDENGRGVMV 491

Query: 700 DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKP 759
           +   + Q  +N++ NAI ++  G ++ I       + V   V D G G+    L +  + 
Sbjct: 492 NPSLLVQALVNLVINAITYSEPGSEVRIKAE-GDQDTVTFSVMDQGSGIPEKHLTRIFER 550

Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           F ++  ++     GTGLGL + K +V  + G+  + S    G+   I  P
Sbjct: 551 FYRVDKARSRNQGGTGLGLSIVKHVVSMHGGQVSVQSVENLGSTFTITIP 600


>gi|167921296|ref|ZP_02508387.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei BCC215]
          Length = 927

 Score =  301 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 126/677 (18%), Positives = 232/677 (34%), Gaps = 59/677 (8%)

Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH 233
           +F   +G+ ++H  +      A+G     +          + ++ + +  +   QSP P 
Sbjct: 24  QFDAHQGYAVLHTPQGAPAALAVGIPAPGRS---ASAFAPYLALLETQLLMGDGQSPLPD 80

Query: 234 LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293
            R++    S    Y       + +         S+                 +     + 
Sbjct: 81  DRVEGYSFSPDGTYLSLLWSREDQAPEAFIESHSASGL---IGDAMRGIRYLRDASTIVP 137

Query: 294 NNSKESFEYLSHRNHP--------SLSAYFDEGENLTPETVDKCPIPFF----------- 334
             +     +L     P         +    D    L    V   P+  F           
Sbjct: 138 LRADRRTVWLPPHPDPLTGKPMIRIVQPAIDATGKLFAIYVRSLPLDMFYSNLNDAPAGS 197

Query: 335 ----VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390
               V   GN+   + +        +   + I       L           +  M   SD
Sbjct: 198 TLTIVDRKGNVILGSSNQHGGDGGATASALGI-----RSLGDGFGGLVERYQDGMFVTSD 252

Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR------INK 444
           +        +H   W    + A+              +    +     D +         
Sbjct: 253 QLPGTDWVLVHAYSWK-TIAAALALRFSLVTGLVAGIIVMLWLFAIQFDRKGLIPNYRRA 311

Query: 445 RKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
           +++    +   +IL     G+ +++  +G +L  N A+ +L     ++ L          
Sbjct: 312 QRLLESEVLNRTILRTAPVGLGLLSAQDGSVLLQNNAMLELSARTSDEPLPIRLWEAYRH 371

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                 +               +            L   ++  +   ++    T+ DIS 
Sbjct: 372 AVGRSSDE-------DGALLQHDLAIEREGANPVYLQANVVAARYRGANVLLCTLLDISL 424

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            K+ + KL  A+  A++ +  KS FLA +SHEIRTPL AIIG  E+++        + + 
Sbjct: 425 RKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPL----SEQQ 480

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            E  + ++   N +L I+ND+LD+SK+ESG+M L   P  +   + E +      A  K 
Sbjct: 481 SERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAYAPLAESKG 540

Query: 684 ILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIST----THTSNEEVI 738
           + + +S    + R    D   ++Q+  N++ NAI FT  G  I I             + 
Sbjct: 541 LALLSSIGEGVARHYAGDPTRIRQVLSNLIGNAIKFTERG-HISIDVHRAKAARDGSAIE 599

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           + V DTG+G+    +      + Q   S   R  G+GLGLPL + +V    G   I S P
Sbjct: 600 IWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLP 659

Query: 799 AKGTLIEIIFPLYDTSH 815
             GT + +  PL +  H
Sbjct: 660 DFGTTVTVALPLREARH 676


>gi|88857764|ref|ZP_01132407.1| probable sensor/response regulator hybrid [Pseudoalteromonas
           tunicata D2]
 gi|88820961|gb|EAR30773.1| probable sensor/response regulator hybrid [Pseudoalteromonas
           tunicata D2]
          Length = 650

 Score =  301 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 98/504 (19%), Positives = 188/504 (37%), Gaps = 32/504 (6%)

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFV--YSHGNLFYANPSFLLLTKYKSVDDIE 361
           +          + + +      VD  P+   +  + +G   Y N  F   T Y +VD++ 
Sbjct: 157 ALTEIKRYEHAYLKEKQKFETFVDLAPVGIAINAFDNGAFNYVNREFSRFTGY-NVDELN 215

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                      P+       + + L                      ++  +     +  
Sbjct: 216 EMDYWE---LTPQSYQAQEQEQLNLLSDTGRYGPYKKE---YTHKNGHTYPVLLSGIKIT 269

Query: 422 NQFPENMPQNGIEPEDVDTR-------INKRKMEIEVMQLCSILEATSDGIAIINREGII 474
           ++   N+    +  +    +         K++ +     +    ++   G+   +     
Sbjct: 270 DEHGNNV-IWSVVQDISQQKTIEDQLIEAKKQADASNRTMQLANDSAGIGVWEWDLTTNA 328

Query: 475 LSTNRAVSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
           L  +  + KL+G   +      + +T  +  +        L   ++              
Sbjct: 329 LVWDDWMYKLYGISAKTFTGAFEAWTNSVHPDDIEGAKAELESAVAGLGE--YNPEFRVV 386

Query: 533 TKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
             +  + +L+   + L              +D++E     N L+ AK  AE  +  KSDF
Sbjct: 387 HPDGCVRTLKASAEILKDECGQPIKVVGVNYDVTEKVIAMNTLAKAKLAAENAAKAKSDF 446

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
           LA +SHEIRTP+ AI+G  +++++ +             +    S   +L I+ND+LD S
Sbjct: 447 LANMSHEIRTPMNAILGGLQLLQSAQL----EDNLRIILDNATYSAQSLLTIINDILDYS 502

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN-IPRILADLRSVKQI 707
           KIES K+ L   P SL + V      +    + K +    +     +   + D   VKQI
Sbjct: 503 KIESNKLELEQAPFSLVDVVDSVKYDLDAQISNKGLDFVVTIDERFVDGWVGDFVRVKQI 562

Query: 708 ALNILSNAIHFTPSGG-QIIIS-TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
            LN++SNA+ FT +G  ++ I  T +   + V + V D+G+GM     +K  + F Q   
Sbjct: 563 LLNLVSNAVKFTHNGHVELTIDYTRYHDQQAVCINVIDSGIGMNEEAQQKIFERFSQADT 622

Query: 766 SQQIRGEGTGLGLPLAKAMVDANM 789
           S   +  GTGLG+ +   +V    
Sbjct: 623 STTRQYGGTGLGMSITSNLVALMG 646



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/159 (12%), Positives = 57/159 (35%), Gaps = 16/159 (10%)

Query: 439 DTRINKRKMEI---EVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVED--- 491
           + +  K ++E    E  +   + +A++D ++II+   G  +  N+A  ++ G   +    
Sbjct: 12  ENKRLKLELEQITFERDKYKMLFDASADALSIIDLNSGKFVECNQAAVEMHGIASKADFL 71

Query: 492 -ILRKPFTVFLEQNTPSVMN---HYLTEILSLDLRQTLEKITLGSTKEEKLLS--LRIII 545
            ++    +   +       +    YL + L    +         +  +  +    + +  
Sbjct: 72  TLIPSDLSPLFQPCGRPSEDMGKAYLEKALHDGAQL---FQWTHTRLDGSIFPCLVSLTA 128

Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
                +    +   DI+   + ++KLS A    ++    
Sbjct: 129 IHFNETCLVLVIGRDITALIETQDKLSAALTEIKRYEHA 167



 Score = 47.7 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/257 (7%), Positives = 56/257 (21%), Gaps = 23/257 (8%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL-KRQNTWYGKTTLW 150
           +G    ++ E  +  G    ++  M   +++   +        +LL         K    
Sbjct: 193 NGAFNYVNREFSRFTGYNVDELNEMDYWELTPQSYQAQEQEQLNLLSDTGRYGPYKKEYT 252

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
              G     P+ L+ + I   +        + +V                 K+    +  
Sbjct: 253 HKNGHTY--PVLLSGIKITDEHGN---NVIWSVVQDISQQKTIEDQLIEAKKQADASNRT 307

Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKN---------------KVSSLTEYYAHKDDVLK 255
            +   + +     ++        L   +                  + T      D    
Sbjct: 308 MQ--LANDSAGIGVWEWDLTTNALVWDDWMYKLYGISAKTFTGAFEAWTNSVHPDDIEGA 365

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
             +     +       +      +    T K     L++   +  + +      +     
Sbjct: 366 KAELESAVAGLGEYNPEFRVVHPDGCVRTLKASAEILKDECGQPIKVVGVNYDVTEKVIA 425

Query: 316 DEGENLTPETVDKCPIP 332
                      +     
Sbjct: 426 MNTLAKAKLAAENAAKA 442


>gi|298241540|ref|ZP_06965347.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297554594|gb|EFH88458.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 680

 Score =  301 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 85/609 (13%), Positives = 194/609 (31%), Gaps = 62/609 (10%)

Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303
             + A +   ++  +  L+ +    +  ++D     +    +        +      +  
Sbjct: 94  AAHVAKRTHYMQAARPRLIGAGLDLVGRRKDGSQFPVEISLRPIRIEHTLHVMGAVRDIT 153

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEI 362
           + R          +      + +        V      +   N     L ++ + +    
Sbjct: 154 AQREVERERMRILQRLRQQDKLISLAHDAILVRDAENRILSWNEGAEHLYRWTAQEVTGK 213

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
                         +          +     I                + +        +
Sbjct: 214 VSHTLLQTRFLISQEAVDQTLEQHGQWQGELIH--------TCRDGTQVIVESRQVLVRD 265

Query: 423 QFPENMPQNGIEPEDVDTRI-------NKRKMEIEVMQLCSILEATSDGIAII-NREGII 474
           +         I  +  + R         +  M+  +  L SIL+   +G+ ++   +  +
Sbjct: 266 EQGAPSAILEINRDVTERRRLEHLEQEARADMDARLHVLQSILDRLPNGVFLVQGPQLRL 325

Query: 475 LSTNRAVSKLFG------YPVEDILRKPFTVFLEQNTPSVMNHYLTEILS-LDLRQTLEK 527
           L  N A + L+G       P E+ L++        N   +    LT   +       L +
Sbjct: 326 LMANDAAAALWGAEWPRGQPQEEFLQQQGIHLFNANGQPLPMDDLTGARAMASGEPVLYR 385

Query: 528 ITLGSTKEEKLLSL------------------RIIIKKLPFSSCYSLTMHDISEWKQEKN 569
                  +   L +                   +            +   D+S  K+ + 
Sbjct: 386 QLGIRRPDGTRLPVVVDAIPFTNLSLLPRLPQEMTPALPSAERVVLVVYQDVSALKEAET 445

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG---NPRYIEY 626
                          K  F++  +HE+RTPLT + G+++ +  +         +    E 
Sbjct: 446 --------------LKDQFISLATHELRTPLTIVAGYADRLLIRAARGKEHGLDEWQREK 491

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
              + ++   +  +  DLLD++++++G+  L      L +   + I  +Q   ++ +  +
Sbjct: 492 VQEMKQASWQLASLTEDLLDVTRMQAGQFALERRSTDLVDLTRKVIQRLQATTDKHQ--L 549

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT-HTSNEEVILRVRDTG 745
               A        D   ++Q+  N+LSNAI ++P GG I +    H    E   R+RD G
Sbjct: 550 DVQAAPPQLWATVDTFRIEQVLSNLLSNAIKYSPGGGPIEVMLEEHAETHEARFRIRDQG 609

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+   +       F +  N++     GTGLGL L + +++ + G     S    G+   
Sbjct: 610 MGIPRAQQAHLFGRFVRAENARAAGIRGTGLGLYLCRELIERHGGHIDFESEEGVGSTFF 669

Query: 806 IIFPLYDTS 814
              P ++ +
Sbjct: 670 FSLPCHEPA 678



 Score = 85.8 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 19/146 (13%), Positives = 58/146 (39%), Gaps = 9/146 (6%)

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
           L + L+ + D + +++  G+I+  N  +  LFGY  ++++ +     L ++  +      
Sbjct: 41  LAAFLDLSPDALIVVDTTGMIVLVNTQLEMLFGYGHDELIGQTIECLLPEHLRAAHVAKR 100

Query: 514 TEILSLDLRQTLEK--ITLGSTKEEKLLSLRII--IKKLPFSSCYSLTMHDISEWKQEKN 569
           T  +     + +      +G  K+     + I     ++  +      + DI+  ++ + 
Sbjct: 101 THYMQAARPRLIGAGLDLVGRRKDGSQFPVEISLRPIRIEHTLHVMGAVRDITAQREVER 160

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHE 595
           +     +   ++    S     ++H+
Sbjct: 161 ERMRILQRLRQQDKLIS-----LAHD 181



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 39/360 (10%), Positives = 90/360 (25%), Gaps = 38/360 (10%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI----LHIDPNNHIGDLLKRQNTWY 144
           +D  G +  ++ +L    G    ++IG  +  +        H+    H     + +    
Sbjct: 55  VDTTGMIVLVNTQLEMLFGYGHDELIGQTIECLLPEHLRAAHVAKRTHYMQAARPRLIGA 114

Query: 145 GKTTL-WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR---L 200
           G   +    +G+    P++++  PI   +         G V       +      R    
Sbjct: 115 GLDLVGRRKDGSQF--PVEISLRPIRIEH----TLHVMGAVRDITAQREVERERMRILQR 168

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL---RMKNKVSSLTEYYAHKDDVLKTE 257
            ++   L  +      V   +  I S      HL     +     ++        ++  E
Sbjct: 169 LRQQDKLISLAHDAILVRDAENRILSWNEGAEHLYRWTAQEVTGKVSHTLLQTRFLISQE 228

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
                  +      +      +  Q   +     +++        L      +     + 
Sbjct: 229 AVDQTLEQHGQWQGELIHTCRDGTQVIVESRQVLVRDEQGAPSAILEINRDVTERRRLEH 288

Query: 318 GENLTPE-----------TVDKCPIPFFVYSH--GNLFYANPSFLLLTKYK-----SVDD 359
            E                 +D+ P   F+       L  AN +   L   +       ++
Sbjct: 289 LEQEARADMDARLHVLQSILDRLPNGVFLVQGPQLRLLMANDAAAALWGAEWPRGQPQEE 348

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
                G+  L +A                +         R   I+      L +      
Sbjct: 349 FLQQQGI-HLFNANGQPLPMDDLTGARAMASGE--PVLYRQLGIRRPDGTRLPVVVDAIP 405



 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/370 (10%), Positives = 81/370 (21%), Gaps = 32/370 (8%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           DA   +   +E         A ++ G     +     +     +   L++   W G+   
Sbjct: 187 DAENRILSWNEGAEHLYRWTAQEVTGKVSHTLLQTRFLISQEAVDQTLEQHGQWQGELIH 246

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
              +GT   V ++   + +       S      I            L +           
Sbjct: 247 TCRDGTQ--VIVESRQVLVRDEQGAPSAI--LEINRDVTERRRLEHLEQEARADMDARLH 302

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
           + +                      R+ N V  +                          
Sbjct: 303 VLQSILD------------------RLPNGVFLVQGPQLRLLMANDAAAALWGAEWPRGQ 344

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
           P++E      ++ +        + + +                          P  VD  
Sbjct: 345 PQEEFLQQQGIHLFNANGQPLPMDDLTGARAMASGEPVLYRQLGIRRPDGTRLPVVVDAI 404

Query: 330 P---IPFFVYSHGNLFYANPSFLL--LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
           P   +         +  A PS     L  Y+ V  ++ A  L     +    +      +
Sbjct: 405 PFTNLSLLPRLPQEMTPALPSAERVVLVVYQDVSALKEAETLKDQFISLATHELRTPLTI 464

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
           +   +DR  I A                      E      +         +    +  +
Sbjct: 465 VAGYADRLLIRA-----ARGKEHGLDEWQREKVQEMKQASWQLASLTEDLLDVTRMQAGQ 519

Query: 445 RKMEIEVMQL 454
             +E     L
Sbjct: 520 FALERRSTDL 529


>gi|288942367|ref|YP_003444607.1| PAS/PAC sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
 gi|288897739|gb|ADC63575.1| PAS/PAC sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
          Length = 721

 Score =  301 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 110/550 (20%), Positives = 194/550 (35%), Gaps = 40/550 (7%)

Query: 287 QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY--SHGNLFYA 344
              G     +      L       +     E E       D   +   V   S   +   
Sbjct: 67  PMLGPQGETAGAFVGVLDLTETLRVEQALRESETQFRLMFDLATVGMAVIEPSTRRVLRV 126

Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
           N     +  Y++ + +                ++         R+               
Sbjct: 127 NQRLCRILGYEAGELLG------MSFQDLTHPEDRWHDRRRFRRAVLQLDTDYFTEKRYV 180

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD- 463
                 +          +   + +       +  D R  + +       L +++E++SD 
Sbjct: 181 RKDGTVVWALVNATFIRDANGDPVRAVAAIFDITDRREAETRARD----LAAVVESSSDF 236

Query: 464 -GIAIINREGIILSTNRAVSKLFGYPVE-DILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
            GIA ++R G  L  N A   L G   E DI       F        +   +   +    
Sbjct: 237 IGIAGLDRRG--LYINPAGRSLVGLDAEQDITEIRIEDFFMPEDLEQLRQSILPAMETAG 294

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-----CYSLTMHDISEWKQEKNKLSHAKK 576
           R   E          + + +     ++   +      Y+    DI   K  +  L     
Sbjct: 295 RWAGEFRFRHFV-TGEPIDVFYDALRIDDPNTGRPLHYATVTRDIRTEKAAEQAL----- 348

Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
              +    K +FLA + HE+R P+  I    E++  +  G  G+PR       +DR    
Sbjct: 349 --READRRKDEFLAVLGHELRNPMAPIRHAVEIL--RALGVDGDPRIRWAIEVLDRQTAH 404

Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696
           +  +++DLLD+S+I  G++ L    + + E V +A   V+    E R            R
Sbjct: 405 MGRLLDDLLDVSRIVQGRIELEPVELRVRELVQQAADGVRALMEEHRHRFVCRLPAPGWR 464

Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKA 756
           +L D   + QI LNIL NA ++TP GG+I I +     + V+++VRD G GMT  +L+  
Sbjct: 465 VLGDPVRLSQILLNILVNAANYTPPGGEIRIDSRIE-GDSVLIQVRDNGQGMTAEQLDSL 523

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFPLYDTS- 814
              F + P++      G GLGL +A+ + D + G     S    +GT + +  P++  + 
Sbjct: 524 FGLFTRGPHAGDADSGGLGLGLAIARRLADLHGGCLEARSEGLGRGTELCLRLPIFTCAR 583

Query: 815 -----HPHDC 819
                 P DC
Sbjct: 584 SANLNEPPDC 593



 Score = 67.7 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 37/374 (9%), Positives = 89/374 (23%), Gaps = 54/374 (14%)

Query: 94  YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI--DPNNHIGDLLKRQNTWYGKTTLWP 151
            +  +++ L + +G  A +++GM   D++       D       +L+    ++ +     
Sbjct: 122 RVLRVNQRLCRILGYEAGELLGMSFQDLTHPEDRWHDRRRFRRAVLQLDTDYFTEKRYVR 181

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
            +GT   V   + A  I   N +    R    +       +     + L      + E  
Sbjct: 182 KDGT--VVWALVNATFIRDANGDPV--RAVAAIFDITDRREAETRARDLA----AVVESS 233

Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271
                +                L   +                   +  +          
Sbjct: 234 SDFIGIAGLDRRGLYINPAGRSLVGLD------------------AEQDITEIRIEDFFM 275

Query: 272 QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI 331
            ED   +  +     +  G      +               A   +  N           
Sbjct: 276 PEDLEQLRQSILPAMETAGRWAGEFRFRHFVTGEPIDVFYDALRIDDPNTGRPLHYA--- 332

Query: 332 PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR 391
              V        A    L     +  + +     L   L  P     +A++ +     D 
Sbjct: 333 --TVTRDIRTEKAAEQALREADRRKDEFLA---VLGHELRNPMAPIRHAVEILRALGVDG 387

Query: 392 TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV 451
                      I+W                 Q            +       + ++E   
Sbjct: 388 DP--------RIRWA----------IEVLDRQTAHMGRLLDDLLDVSRIVQGRIELEPVE 429

Query: 452 MQLCSILEATSDGI 465
           +++  +++  +DG+
Sbjct: 430 LRVRELVQQAADGV 443



 Score = 45.8 bits (107), Expect = 0.029,   Method: Composition-based stats.
 Identities = 29/253 (11%), Positives = 62/253 (24%), Gaps = 10/253 (3%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAF-KMIGMRLCDVSDILHIDPNNH-IGDLLKRQNT 142
           F            I+      +G  A   +  +R+ D      ++     I   ++    
Sbjct: 236 FIGIAGLDRRGLYINPAGRSLVGLDAEQDITEIRIEDFFMPEDLEQLRQSILPAMETAGR 295

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSR-NREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
           W G+        T   + +   AL I          +    +    R +       +  D
Sbjct: 296 WAGEFRFRHFV-TGEPIDVFYDALRIDDPNTGRPLHYAT--VTRDIRTEKAAEQALREAD 352

Query: 202 KKFSH----LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257
           ++       L    +   +  +   +I          R++  +  L    AH   +L   
Sbjct: 353 RRKDEFLAVLGHELRNPMAPIRHAVEILRALGVDGDPRIRWAIEVLDRQTAHMGRLLDDL 412

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
                  +     E  +     L Q         ++ +       L       L      
Sbjct: 413 LDVSRIVQGRIELEPVELRVRELVQQAADGVRALMEEHRHRFVCRLPAPGWRVLGDPVRL 472

Query: 318 GENLTPETVDKCP 330
            + L    V+   
Sbjct: 473 SQILLNILVNAAN 485


>gi|256829874|ref|YP_003158602.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256579050|gb|ACU90186.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 678

 Score =  301 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 102/530 (19%), Positives = 191/530 (36%), Gaps = 56/530 (10%)

Query: 313 AYFDEGENLTPETVDKCPIPFFVY----SHGNLFYANP-SFLLLTKYKSVDDIEIAGGLS 367
              +   +   E +    +         S   L    P     L K  +V+ +  A   S
Sbjct: 31  KCAEYVASQVRELLGVKAVAVVACQGHGSPHRLLAVRPLRQEALFKKDAVEQLIHASHAS 90

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
            L  A  +S  +      L RS     +    L          + +  +          +
Sbjct: 91  HL--AMTVSPEDRTVSGELLRSLGLSDSVIVPLRVGSEVIGALVLLGLMDTCGIETIVHS 148

Query: 428 MPQNG-----IEPEDVDTRINKRKMEIEVMQLCSILEAT--------------SDGIAII 468
           + +       I  +    R  +  +     +L +  +                 + + + 
Sbjct: 149 LDRLSSLLALIMRQADQYRDLELAVRERTAELQATRDRLEEQHAFLSSLLSSLPNPVFVQ 208

Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528
           +  G IL  N A S L G   ++++ +            + + ++ E    +     E  
Sbjct: 209 DIHGRILRCNDAFSALVGKSGQELVGEH--------ESRLRDSFVLEPAKNEGLGPDEFE 260

Query: 529 TLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSH 584
                 +  +  +         S          + D+S+       L+ A++ AE  S  
Sbjct: 261 --CRAADGCMRRMLSSCAPFHTSQGQLAGFINVLTDVSD-------LAAARRAAEASSRA 311

Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
           KS+FLA +SHE+RTPL  I+G  +++ +       +    E+     RS   +  ++ D+
Sbjct: 312 KSEFLANMSHEVRTPLNGIVGMLQLLSHTYL----DAEQKEFVFTAIRSSKRLTQLLTDI 367

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRS 703
           L+IS+IE+GK+++  +     +       L  + A  K + +       IP  ++ D   
Sbjct: 368 LEISRIEAGKLDVVAQEFHFVDLRDSVRDLFVIPAKAKGLELSFEIDEAIPSHVVGDEGR 427

Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EVILRVRDTGVGMTNYELEKAMKPF 760
           ++QI  N++ NA  FTP G  + ++           V   V+DTGVG+     E     F
Sbjct: 428 LRQILFNLVGNATKFTPRGS-VQVTARRLDQGGQMHVEFTVQDTGVGIPRERQEDIFNAF 486

Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            Q+  S   +  G GLGL + + +VD   G   + S P  GT + +  PL
Sbjct: 487 TQVDGSAVRQHGGVGLGLAIVRRLVDMMDGTITVQSEPGHGTTMTVRVPL 536



 Score = 43.5 bits (101), Expect = 0.15,   Method: Composition-based stats.
 Identities = 32/252 (12%), Positives = 67/252 (26%), Gaps = 18/252 (7%)

Query: 153 EGTNLYVPIDLAALP-IYSRNREFSGFRGFGIV---------HVNRVDNDPRALGKRLDK 202
            GT  +V   +     + S+ RE  G +   +V          +  V    +    + D 
Sbjct: 20  SGTLEHVTDPVKCAEYVASQVRELLGVKAVAVVACQGHGSPHRLLAVRPLRQEALFKKDA 79

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
               +H     H ++     D          L + + V       +     L        
Sbjct: 80  VEQLIHASHASHLAMTVSPEDRTVSGELLRSLGLSDSVIVPLRVGSEVIGALVLLGLMDT 139

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
              E+ +   +   ++      +   +  L+   +E    L            +E     
Sbjct: 140 CGIETIVHSLDRLSSLLALIMRQADQYRDLELAVRERTAELQATRD-----RLEEQHAFL 194

Query: 323 PETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGG--LSTLLDAPKLSDNN 379
              +   P P FV   HG +   N +F  L      + +         + +  P  ++  
Sbjct: 195 SSLLSSLPNPVFVQDIHGRILRCNDAFSALVGKSGQELVGEHESRLRDSFVLEPAKNEGL 254

Query: 380 AIKPVMLYRSDR 391
                    +D 
Sbjct: 255 GPDEFECRAADG 266



 Score = 41.6 bits (96), Expect = 0.54,   Method: Composition-based stats.
 Identities = 15/120 (12%), Positives = 42/120 (35%), Gaps = 9/120 (7%)

Query: 59  QESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRL 118
            E  +  + L+ ++ F+   +       +  D HG +   ++     +G    +++G   
Sbjct: 178 AELQATRDRLEEQHAFLSSLLSSLPNPVFVQDIHGRILRCNDAFSALVGKSGQELVGEHE 237

Query: 119 CDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGF 178
             + D   ++P        K +     +      +G    +    +  P ++   + +GF
Sbjct: 238 SRLRDSFVLEPA-------KNEGLGPDEFECRAADGCMRRML--SSCAPFHTSQGQLAGF 288


>gi|196044454|ref|ZP_03111689.1| sporulation kinase A [Bacillus cereus 03BB108]
 gi|225865624|ref|YP_002751002.1| sporulation kinase A [Bacillus cereus 03BB102]
 gi|196024489|gb|EDX63161.1| sporulation kinase A [Bacillus cereus 03BB108]
 gi|225787607|gb|ACO27824.1| sporulation kinase A [Bacillus cereus 03BB102]
          Length = 510

 Score =  301 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 96/529 (18%), Positives = 200/529 (37%), Gaps = 39/529 (7%)

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTK 353
           +S +   + +                +     +  P     +   G + + NPS   +  
Sbjct: 7   SSTQKKRHPNISRRLRNHIQNRSLTEMYASLFEHNPDSIISLNLEGVILHINPSAERILG 66

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
           Y S++ +E     S L       + +  + V+    +         + +I       L +
Sbjct: 67  YTSLE-LEQKNITSIL-------EAHISEQVLQNIKNTEVDNQQEYILSIYHKNGFLLDV 118

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
                    Q         ++P +   RI +  ++    +L +++ +    +   + EG 
Sbjct: 119 VTKLVPIFVQNRLTGVYTIMKPLEKSERI-ENMLKESEKRLRTLVNSMPAFVIFKDHEGR 177

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN----HYLTEILSLDLRQTLEKIT 529
            L  N      F +       K  +  ++ N            + E+     RQ L    
Sbjct: 178 WLEANDYALSCFNFHHVPYRGKKDSELIQYNEAYREAFLHCEEVDELAWQ-QRQILHGEE 236

Query: 530 LGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
               +++  L L +    L           +   D++E K+ +  L  ++K+A       
Sbjct: 237 FIIHRDDFDLILSMSKVPLYHPDGSRKGLIVMGRDVTELKETEKLLRKSEKLAVV----- 291

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
               A ++HEIR PLT++ GF  ++      P  +  +  Y + +    + +  I +  +
Sbjct: 292 GQLTAGIAHEIRNPLTSLKGFLTLLL-----PEIDEEHKWYIDVMLSEISQMESITSQFM 346

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
            +SK +     L  +  ++   + E ++ +   A    + I     + +  I  D   +K
Sbjct: 347 AMSKPQ----VLAIQTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYVYDIQCDGNQLK 402

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           Q+ +NIL NAI   P+GG I I T    +  +++R+ D G G+    + +  +PF     
Sbjct: 403 QVFINILKNAIEAMPNGGNIFIQTKPLEDNFILIRIIDEGCGIPEDRISRLGEPFY---- 458

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
              ++ +GTGLGL +   +++ + GK +I S   KGT+++I  PL  + 
Sbjct: 459 --SLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTIVDIQLPLSSSH 505


>gi|167725871|ref|ZP_02409107.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei DM98]
          Length = 927

 Score =  301 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 126/677 (18%), Positives = 232/677 (34%), Gaps = 59/677 (8%)

Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH 233
           +F   +G+ ++H  +      A+G     +          + ++ + +  +   QSP P 
Sbjct: 24  QFDAHQGYAVLHTPQGAPAALAVGIPAPGRS---ASAFAPYLALLETQLLMGDGQSPLPD 80

Query: 234 LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293
            R++    S    Y       + +         S+                 +     + 
Sbjct: 81  DRVEGYSFSPDGTYLSLLWSREDQAPEAFIESHSASGL---IGDAMRGIRYLRDASTIVP 137

Query: 294 NNSKESFEYLSHRNHP--------SLSAYFDEGENLTPETVDKCPIPFF----------- 334
             +     +L     P         +    D    L    V   P+  F           
Sbjct: 138 LRADRRTVWLPPHPDPLTGKPMIRIVQPAIDATGKLFAIYVRSLPLDMFYSNLNDAPAGS 197

Query: 335 ----VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390
               V   GN+   + +        +   + I       L           +  M   SD
Sbjct: 198 TLTIVDRKGNVILGSSNQHGGDGGATASALGI-----RSLGDGFGGLVERYQDGMFVTSD 252

Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR------INK 444
           +        +H   W    + A+              +    +     D +         
Sbjct: 253 QLPGTDWVLVHAYSWK-TIAAALALRFSLVTGLVAGIIVMLWLFAIQFDRKGLIPNYRRA 311

Query: 445 RKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
           +++    +   +IL     G+ +++  +G +L  N A+ +L     ++ L          
Sbjct: 312 QRLLESEVLNRTILRTAPVGLGLLSAQDGSVLLQNNAMLELSARTSDEPLPIRLWEAYRH 371

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                 +               +            L   ++  +   ++    T+ DIS 
Sbjct: 372 AVGRSSDE-------DGALLQHDLAIEREGANPVYLQANVVAARYRGANVLLCTLLDISL 424

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            K+ + KL  A+  A++ +  KS FLA +SHEIRTPL AIIG  E+++        + + 
Sbjct: 425 RKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPL----SEQQ 480

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            E  + ++   N +L I+ND+LD+SK+ESG+M L   P  +   + E +      A  K 
Sbjct: 481 SERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAYAPLAESKG 540

Query: 684 ILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIST----THTSNEEVI 738
           + + +S    + R    D   ++Q+  N++ NAI FT  G  I I             + 
Sbjct: 541 LALLSSIGEGVARHYTGDPTRIRQVLSNLIGNAIKFTERG-HISIDVHRAKAARDGSAIE 599

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           + V DTG+G+    +      + Q   S   R  G+GLGLPL + +V    G   I S P
Sbjct: 600 IWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLP 659

Query: 799 AKGTLIEIIFPLYDTSH 815
             GT + +  PL +  H
Sbjct: 660 DFGTTVTVALPLREARH 676


>gi|160885058|ref|ZP_02066061.1| hypothetical protein BACOVA_03055 [Bacteroides ovatus ATCC 8483]
 gi|156109408|gb|EDO11153.1| hypothetical protein BACOVA_03055 [Bacteroides ovatus ATCC 8483]
          Length = 570

 Score =  301 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 90/380 (23%), Positives = 166/380 (43%), Gaps = 14/380 (3%)

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFG-YPVE 490
           I          +  ++     +  +L+  +  I + + +   ++  N+   +  G  P  
Sbjct: 197 IVSTATKRWQVETSLQQSQRTMQKVLDNINANIFVSDYDTLKVIFANKPFREEAGEVPEN 256

Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL-RIIIKKLP 549
               +     LE          L  + +      +      +   ++  ++  + IK L 
Sbjct: 257 AECWRMLNAGLENGCKHCPKPKL--LDANRKFTGVHFWEDYNPVTKRWYTIQSMAIKWLD 314

Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                     DI+  KQ + +L  AK+ AE+    KS FLA +SHEIRTPL AI+GFS +
Sbjct: 315 GRWAIMELATDITTRKQVELELIQAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSL 374

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           +       L   RY+ Y + +  +  L+L++++D+LDISKIE+G ++L    V + +   
Sbjct: 375 LAETDEAEL---RYV-YMSLVQENNELLLNLISDILDISKIEAGMIDLVMGRVDVPQLCR 430

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
           E I+       +  + +R    +    I AD   + Q+  N L+NA+ FT  G  I +S 
Sbjct: 431 EVIATFSHKKRDTAVELRFDENSPQIVIDADKNRIMQVLSNFLTNALKFTTKGS-ITLSY 489

Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
           +     +V   V DTG G+ + +  +    F ++ +      +G GLGL + +++V+   
Sbjct: 490 SLEDESQVRFCVTDTGKGIPDEQKHEIFNRFVKLDSF----VQGAGLGLSICQSLVNRMG 545

Query: 790 GKFYIFSTPAKGTLIEIIFP 809
           GK  + S   +G+      P
Sbjct: 546 GKIGVESREGEGSCFWFTHP 565


>gi|118478878|ref|YP_896029.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           thuringiensis str. Al Hakam]
 gi|229185874|ref|ZP_04313047.1| hypothetical protein bcere0004_34220 [Bacillus cereus BGSC 6E1]
 gi|118418103|gb|ABK86522.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           thuringiensis str. Al Hakam]
 gi|228597586|gb|EEK55233.1| hypothetical protein bcere0004_34220 [Bacillus cereus BGSC 6E1]
          Length = 516

 Score =  301 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 96/529 (18%), Positives = 200/529 (37%), Gaps = 39/529 (7%)

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTK 353
           +S +   + +                +     +  P     +   G + + NPS   +  
Sbjct: 13  SSTQKKRHPNISRRLRNHIQNRSLTEMYASLFEHNPDSIISLNLEGVILHINPSAERILG 72

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
           Y S++ +E     S L       + +  + V+    +         + +I       L +
Sbjct: 73  YTSLE-LEQKNITSIL-------EAHISEQVLQNIKNTEVDNQQEYILSIYHKNGFLLDV 124

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
                    Q         ++P +   RI +  ++    +L +++ +    +   + EG 
Sbjct: 125 VTKLVPIFVQNRLTGVYTIMKPLEKSERI-ENMLKESEKRLRTLVNSMPAFVIFKDHEGR 183

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN----HYLTEILSLDLRQTLEKIT 529
            L  N      F +       K  +  ++ N            + E+     RQ L    
Sbjct: 184 WLEANDYALSCFNFHHVPYRGKKDSELIQYNEAYREAFLHCEEVDELAWQ-QRQILHGEE 242

Query: 530 LGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
               +++  L L +    L           +   D++E K+ +  L  ++K+A       
Sbjct: 243 FIIHRDDFDLILSMSKVPLYHPDGSRKGLIVMGRDVTELKETEKLLRKSEKLAVV----- 297

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
               A ++HEIR PLT++ GF  ++      P  +  +  Y + +    + +  I +  +
Sbjct: 298 GQLTAGIAHEIRNPLTSLKGFLTLLL-----PEIDEEHKWYIDVMLSEISQMESITSQFM 352

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
            +SK +     L  +  ++   + E ++ +   A    + I     + +  I  D   +K
Sbjct: 353 AMSKPQ----VLAIQTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYVYDIQCDGNQLK 408

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           Q+ +NIL NAI   P+GG I I T    +  +++R+ D G G+    + +  +PF     
Sbjct: 409 QVFINILKNAIEAMPNGGNIFIQTKPLEDNFILIRIIDEGCGIPEDRISRLGEPFY---- 464

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
              ++ +GTGLGL +   +++ + GK +I S   KGT+++I  PL  + 
Sbjct: 465 --SLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTIVDIQLPLSSSH 511


>gi|86157556|ref|YP_464341.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85774067|gb|ABC80904.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 748

 Score =  301 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 106/694 (15%), Positives = 232/694 (33%), Gaps = 52/694 (7%)

Query: 128 DPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187
           DP      +L  +    G+ ++  I      +     A+P+   +R  +G +   +V   
Sbjct: 80  DPERLAARVLPDRE---GEGSVVAIVDRAGRLVARAPAVPLAWDDRLIAGSQ--DLVRAA 134

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247
               +     +      + L             +          P  R      +     
Sbjct: 135 LAGAEAAGPMRAEGGGPARLAAAVPVPELGWAVRATQPRAAMLAPMRRELALGVAGAGLV 194

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
           A     L       +    +S   +         +  + Q   T  +         +   
Sbjct: 195 A-----LVALGASWVVGAHTSRALRRLERHAAALERGEAQGPLTGPDEVVRLGAAYAQMA 249

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYSHG--NLFYANPSFLLLTKYKSVDDIEIAGG 365
                 + D           + P+   +       + +AN ++L       +D      G
Sbjct: 250 R-----HLDAARRRFEAAFAEAPVGVLILDPAELRVRWANQAYLAF-----LDAPFRGAG 299

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR-ENSLAMTFIPFEKANQF 424
           +  L     L   +    + L R +      +      +++                   
Sbjct: 300 VQGLRLEEFLPRAHEAGLIALLR-EVAAGDVAHEEQEYRYDGFARGTTWWRWSVRAVESA 358

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
                   +  E  +    + ++E +  +L ++L     G+ + +  G ++  N A  ++
Sbjct: 359 GGGRDLVLMITEVTEQVRAREQVEADRRRLETVLRVLPVGVLMADAGGQVVQANDAARRI 418

Query: 485 FG-----YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
           +G      P      +           +  +  L   L        E + +    +    
Sbjct: 419 WGSRAPFRPGALYREQRARRADSGTPLAPGDWALQRALRSGEAVGGELVEIDR-FDGTQA 477

Query: 540 SLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
            +      +       +    T+ D++E ++                 ++ + L  VSH+
Sbjct: 478 VVLNGAAPIRDGEGRVVGAVTTLLDVTELRR--------------AVRNRDEVLQVVSHD 523

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           +RTPL+A+   +  +   R GP    +    A  +  +G  +  +++DLLD+  +E G++
Sbjct: 524 LRTPLSAVTLGAAALTRLRDGPDAAAQARRAAGRLAAAGRRMNRLIDDLLDLETLEEGRL 583

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715
           ++  EP    + + EA   ++  A  K + +  S A  +P +  D   V Q+  N+ SNA
Sbjct: 584 SMRPEPCDPADLLGEAADQLREAARAKGLDLCLSAAPGLPAVACDRDRVLQVLGNVASNA 643

Query: 716 IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           +  T  G  + ++     +  V+ R+RDTG G+ + +L      F +   ++     G+G
Sbjct: 644 VKATEEGA-VCLAAEAQGDGAVVFRIRDTGPGIPDADLPHVFDRFQRGSAARWR---GSG 699

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           LGL +A+ +V+A+ G+ +  S P  GT +    P
Sbjct: 700 LGLAIARGLVEAHGGRIWAESAPGAGTTVSFTLP 733



 Score = 46.2 bits (108), Expect = 0.026,   Method: Composition-based stats.
 Identities = 39/329 (11%), Positives = 87/329 (26%), Gaps = 19/329 (5%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN------HIGDLLKRQNTW 143
           DA G + + ++   +  G+ A    G    +                  +   L+     
Sbjct: 403 DAGGQVVQANDAARRIWGSRAPFRPGALYREQRARRADSGTPLAPGDWALQRALRSGEAV 462

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
            G+            V +   A PI        G     +  +  V    RA+  R +  
Sbjct: 463 GGELVEIDRFDGTQAV-VLNGAAPIRDGEGRVVGA----VTTLLDVTELRRAVRNRDEVL 517

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
               H+++   S+V      +   +  P       + +        + + L  +   L T
Sbjct: 518 QVVSHDLRTPLSAVTLGAAALTRLRDGPDAAAQARRAAGRLAAAGRRMNRLIDDLLDLET 577

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
            EE  L  + +            +    L+  ++     L     P L A   + + +  
Sbjct: 578 LEEGRLSMRPEPC---DPADLLGEAADQLREAARAKGLDLCLSAAPGLPAVACDRDRVLQ 634

Query: 324 ETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
              +           G +  A  +     +        I      + DA      +  + 
Sbjct: 635 VLGNVASNAVKATEEGAVCLAAEA-----QGDGAVVFRIRDTGPGIPDADLPHVFDRFQR 689

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLA 412
               R   + +  +     ++ +     A
Sbjct: 690 GSAARWRGSGLGLAIARGLVEAHGGRIWA 718


>gi|326793261|ref|YP_004311082.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           lentocellum DSM 5427]
 gi|326544025|gb|ADZ85884.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           lentocellum DSM 5427]
          Length = 817

 Score =  301 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 87/356 (24%), Positives = 162/356 (45%), Gaps = 8/356 (2%)

Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
           E  SD +AII  +G +   N A   + G+   +++ +  + F+ +           +   
Sbjct: 435 ETASDLMAIIAMDGRVEKVNGAWESVLGWKPSELIGRSSSDFVYREDQQRFFE--KKFCI 492

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578
            + R     I  G  K +    +   IK       Y  T  DIS+ K+++       + A
Sbjct: 493 NNERAVRGIICRGYCKNKSYKWIEWSIKYTSNKQYYVCTGRDISKQKEQEEARKVY-EEA 551

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVI----KNQRFGPLGNPRYIEYANYIDRSG 634
            +    KS+F A +SHE RTPL  I+   +++    K        N   ++Y + + ++ 
Sbjct: 552 LQIEKIKSEFFANMSHEFRTPLNIILATVQLLEKGIKQGHINVQPNFDLVKYLSTVKQNT 611

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
             +L + N++++++ I++G   +  E +++   + E    V  Y   + I +        
Sbjct: 612 YRILRLSNNIMELTSIDTGHYKMKLENLNIVNVIEETTLSVADYIESRGITLLFDTDVEE 671

Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELE 754
                D   +++I LNILSN++ +T  GG I ++ +      +++ V+DTGVG+   +L 
Sbjct: 672 VITACDAEKLERIILNILSNSVKYTYRGGIISVNLSLQDEGLIVV-VKDTGVGIPKEKLT 730

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
               PF Q+ +    + EG+G+GL L K++V  + G     S   KGT I I FP+
Sbjct: 731 TIFNPFIQVDSLLTRKCEGSGIGLALVKSLVKMHEGTIDAKSELGKGTEIVIKFPI 786



 Score = 42.7 bits (99), Expect = 0.29,   Method: Composition-based stats.
 Identities = 40/268 (14%), Positives = 73/268 (27%), Gaps = 40/268 (14%)

Query: 333 FFVYSHGNLFYANPSFLLLTKYK-------SVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
             V + G + + N   L   +Y         +D   I G +  +     L   +    V 
Sbjct: 13  LIVNAEGKIEFCNKCLLEDLQYTLSAYQEKKLDKFLIPGEVKFISWEELLRLGHTKFLVS 72

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
           L   +   I+    L+  +WN E    +     E                          
Sbjct: 73  LRNINDEEISYEGILNIGKWNEEQIYYIILRENEPIYNV--------------------- 111

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNR----AVSKLF-GYPVEDILRKPFTVF 500
                  +L  +L+     + + ++E      N       S L        IL K     
Sbjct: 112 ------KELERLLDKLPFVVWLKDQEKKYRFVNECFINKASALTQHLERSSILGKNDEDI 165

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH- 559
             Q    ++     E+L        EK+     K+       I I        Y L M  
Sbjct: 166 WNQEFTRIIQEGEDELLIKKEAICYEKVIEIDNKQRWYQFNFIPITSSSGQVQYILGMRE 225

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSD 587
           +I+ +K+ + +L          +   + 
Sbjct: 226 EITLYKKMERQLDKNYYKEYMRNKLYTQ 253


>gi|39996655|ref|NP_952606.1| sensory box histidine kinase/response regulator [Geobacter
           sulfurreducens PCA]
 gi|39983536|gb|AAR34929.1| sensory box histidine kinase/response regulator [Geobacter
           sulfurreducens PCA]
 gi|298505668|gb|ADI84391.1| sensor histidine kinase response regulator, PAS, PAC, PAS and GAF
           domain-containing [Geobacter sulfurreducens KN400]
          Length = 1112

 Score =  301 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 120/805 (14%), Positives = 237/805 (29%), Gaps = 82/805 (10%)

Query: 71  ENTFVFDPIPRTVR-FTWNIDAHGYLKEISEELPKTIGNYAFKMIG-MRLCDVSDILHID 128
           E+   ++ +    R  TW ID  G    +S  +    G    +++G MR  ++      +
Sbjct: 202 ESAARYNQLAAQSRTITWEIDVTGLFTYVSPVVESVFGYLPNELVGAMRFYEIHPTEGRE 261

Query: 129 PNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNR 188
                   +    T   +     +      + +   ALPI   +    G+RG        
Sbjct: 262 RFKTSFLEMFASKTIVEEVVHPVVAVDGRTIWMSTNALPILDEHGTLVGYRG--ACTDIS 319

Query: 189 VDNDPRALGKRLDKKFSHLHEIKK-GHSSVEKEKYDIFSQQSPP-----PHLRMKNKVSS 242
                    +  +     L E    G   ++ E   +                  +++  
Sbjct: 320 ERKQLEDRLRESELLHRTLFEQNPYGVVIIDPENATLIDFNDQACRQLGYTREEFSRLKI 379

Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302
                    +  +     ++          +            +  +  ++  +     +
Sbjct: 380 SDIDIVESPEQTRNRIQKIMRDGYDEFETLQRTKQGEQRSILVRAQYSHIKGKNVYHCIW 439

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVD---- 358
                    +       +L   +V          +   L     S L        D    
Sbjct: 440 RDITAEKKEAQLLLARTHLIEYSVSHSLDELLTETLDRLEELTGSELGFFHLLQEDQRTI 499

Query: 359 ----------------------DIEIAGGLS--TLLDAPKLSDNNAIKPVMLYRSDRTCI 394
                                 DI  AG  +    L  P + ++ A  P           
Sbjct: 500 TLHAWSSRTAELCTAECSHRHYDISRAGVWTDCASLRQPVIHNDYASLPHRKGLPLGHAP 559

Query: 395 AASARLHTIQWNRENSLAMTF---IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV 451
                   I  + + +  +                      +  +  + +     +    
Sbjct: 560 VNRQLTMPIMRHDKIAGILGIGNKKTDYTREDIAVVSRFADLVWDIAERKQVHDSLRESD 619

Query: 452 MQLCSILEATSDGI-AIINREGIILSTNRAVSKLFGYPVEDILRKPFTV--FLEQNTPSV 508
            +  S        I      +G  L  N+    + G+  E++L        +L  +  + 
Sbjct: 620 EKFSSAFNNAPLMITISTIEDGRYLDVNQRFLDISGFSREEVLANTAVSLGWLGASDRTR 679

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568
           +   +   L     Q LE  T   +  + L      I  +           DI+E ++ +
Sbjct: 680 LKEMM---LKNGSIQDLELETRSKSGAKVLCKYWGTIIPVAGRKRLLSIALDITEHRRME 736

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV--IKNQRFGPLGNPRYIEY 626
            +L  A+K+              V+H+    L+ IIG +E+  ++  R  PL +      
Sbjct: 737 QQLFQAQKMD-----SIGRLAGGVAHDFNNMLSIIIGRTELALMQTDRDNPLYH-----N 786

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
              I  +     +I   LL  S+    K  +  + + L++ ++  + +++     + I +
Sbjct: 787 LEEIQGAAKRSAEITKQLLTFSR----KQTIVPKVLDLNDTITSMLKMLR-RLLGENIKL 841

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT------------HTSN 734
             +   N+ R+  D   + QI +N+  NA       G+I I T+                
Sbjct: 842 GWNPGYNLRRVKIDPSQLDQILVNLCVNARDAIAGTGEINIQTSNGTFGEASGTDDIPPG 901

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
           + V+L V DTG G+    LE   +PF          G GTGLGL     +V    G+  +
Sbjct: 902 DYVLLEVSDTGCGIGPELLEHIFEPFFTTKEL----GHGTGLGLATVYGIVQQCGGQIRV 957

Query: 795 FSTPAKGTLIEIIFPLYDTSHPHDC 819
            S P  G+   I FP    S P D 
Sbjct: 958 SSLPGNGSTFRIYFPA--ASAPTDA 980



 Score = 97.4 bits (241), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 41/320 (12%), Positives = 97/320 (30%), Gaps = 24/320 (7%)

Query: 311 LSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
           L    +E      +   +     + +   G   Y +P    +  Y   + +         
Sbjct: 196 LEKELEESAARYNQLAAQSRTITWEIDVTGLFTYVSPVVESVFGYLPNELVGA-----MR 250

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
                 ++              +       +H +      ++ M+       ++    + 
Sbjct: 251 FYEIHPTEGRERFKTSFLEMFASKTIVEEVVHPVVAVDGRTIWMSTNALPILDEHGTLVG 310

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG-IILSTNRAVSKLFGYP 488
             G   +  + +  + ++    +   ++ E    G+ II+ E   ++  N    +  GY 
Sbjct: 311 YRGACTDISERKQLEDRLRESELLHRTLFEQNPYGVVIIDPENATLIDFNDQACRQLGYT 370

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE--KLLSLRIIIK 546
            E+  R   +      +P    + + +I+        E  TL  TK+   + + +R    
Sbjct: 371 REEFSRLKISDIDIVESPEQTRNRIQKIMRDG---YDEFETLQRTKQGEQRSILVRAQYS 427

Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
            +   + Y     DI+  K+ + +L  A+    +           VSH +   LT  +  
Sbjct: 428 HIKGKNVYHCIWRDITAEKK-EAQLLLARTHLIE---------YSVSHSLDELLTETLDR 477

Query: 607 SEVIKNQRFG--PLGNPRYI 624
            E +     G   L      
Sbjct: 478 LEELTGSELGFFHLLQEDQR 497


>gi|24379906|ref|NP_721861.1| putative histidine kinase CovS; VicK-like protein [Streptococcus
           mutans UA159]
 gi|24377885|gb|AAN59167.1|AE014984_2 putative histidine kinase CovS; VicK-like protein [Streptococcus
           mutans UA159]
          Length = 450

 Score =  301 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 84/377 (22%), Positives = 158/377 (41%), Gaps = 35/377 (9%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           R+    +  E  +L SIL   +DG+   +R G I   N    K      E  L       
Sbjct: 83  RLTHENLAQEKNRLTSILSYMTDGVLATDRSGKITVINDMAQKQLNVTREQALECNILDI 142

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS----L 556
           L+ ++            +  + +T E +     + ++ ++LRI        S +      
Sbjct: 143 LDDDSY---------TYNDLITKTPEIVLTRRDEYDEFITLRIRFALNRRESGFISGLIA 193

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            +HD +E ++E+ +                 F++ VSHE+RTPLT++  + E +     G
Sbjct: 194 VLHDATEQEKEERERRL--------------FVSNVSHELRTPLTSVKSYLEAL---DDG 236

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV- 675
            L       +        N ++ ++ DLL +S+I++   +L  E  +    ++  +    
Sbjct: 237 ALTESVAPSFIKVSLDETNRMMRMITDLLSLSRIDNQTSHLDVELTNFTAFMNYILDRFD 296

Query: 676 ---QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
                 +  K   I   + +    I  D   + Q+  NIL+NAI ++P GG++ I+   T
Sbjct: 297 QIQSQQSTNKVYEIIRDYPDKSVWIEIDTDKMTQVIDNILNNAIKYSPDGGKVTITMQTT 356

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
              ++IL + D G+G+   +L      F ++  ++     GTGLGL +AK +V  + G  
Sbjct: 357 DT-QLILSISDQGLGIPKKDLPLIFDRFYRVDKARSRAQGGTGLGLAIAKEIVKQHKGFI 415

Query: 793 YIFSTPAKGTLIEIIFP 809
           +  S   +G+   I+ P
Sbjct: 416 WANSEEGEGSTFTIVLP 432


>gi|256829197|ref|YP_003157925.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256578373|gb|ACU89509.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 918

 Score =  301 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 110/713 (15%), Positives = 251/713 (35%), Gaps = 46/713 (6%)

Query: 128 DPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREF--SGFRGFGIVH 185
           D    I + +  +     ++ L P       +   L  +  Y     F      G  I+ 
Sbjct: 91  DSAYQIAEAIHTR-----ESGLRPKAEVQKMIVETLRPIRFYDGRGYFFIDDMNGQFILL 145

Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEK----YDIFSQQSPPPHLRMKNKVS 241
               + + + L    D     + +     + + + +    Y  ++ ++P       + V 
Sbjct: 146 PTSPELEGKTLLDNQDDTGHFIMQGLIAAARLPRGEGFSRYRWYTPENPTVMADKLSYVR 205

Query: 242 SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301
               Y           K+     +E+ L  ++                 +L + SK + E
Sbjct: 206 YFEPYDWLIGTGDYLYKWAERQKQEAMLQLRDHRFNTTGYVALFDSDGSSLLSPSKAALE 265

Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIE 361
             +  +            ++  + +        +  +        +    T Y       
Sbjct: 266 GKTAADLSVFE------RSVLEKLLSTARAGGGIVHYDWPQAGTGTLAKKTAYVQTYAPW 319

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
               ++T+ D    +   A +        R  +       TI      +L +  I     
Sbjct: 320 QWVVVTTIFDDEVHAAVAAEQQNHAQLITRQAL-------TITLAGLMALLIGLIVSWIF 372

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD----GIAIINREGIILST 477
           +++   +               +++ +  + +   ILE        G   ++     L+ 
Sbjct: 373 SRWMRQLFTEYHRNNLAQQEALRQQADA-LHKTQGILEQAQSIGHMGSWRLDLVEKRLTW 431

Query: 478 NRAVSKLFGYPVEDIL--RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
           +    ++FG   +++    + F   +  +  + ++H     +  +  +   +  +    +
Sbjct: 432 SDEAYRIFGATQDEVEPSYELFMAIVHPDDRAAVDHAYASSIKENGERYEIEHRIVRRDD 491

Query: 536 EKLLSLRIIIKKLPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
            ++  +         +          + DI+E K+E+ +L  AK+ AE  +  KS+FLA 
Sbjct: 492 GEISFVIERCVHERDAEGTVIRSVGMVQDITERKREEKELLLAKEHAEAANRAKSEFLAN 551

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           +SHEIRTPL  I+G  ++++      + +   +++     +S N +  +++D+LD+S++E
Sbjct: 552 MSHEIRTPLNGILGMLQLLE----TSVQDKEELQFCALAIQSTNRLTSLLSDILDLSRVE 607

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALN 710
           +  M +  E  +L  A+++ I L    A +  + +       +P  ++ D   ++Q+  N
Sbjct: 608 ASMMLIRSERFNLHSALTQTIDLFGPVAVQTGVTLTAHLDPGLPIWVVGDSIRLQQVLTN 667

Query: 711 ILSNAIHFTPSGGQIIIST-----THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           ++ N+  FT  G  + +              V   + DTG G+   ++    +PF Q+  
Sbjct: 668 LIGNSFKFTKRG-HVHVEAYPLPSRSIDTLRVFFAIEDTGCGIAEKDIGNLFQPFTQVSQ 726

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
                 +G GLGL ++K +V    G   + S    GT             PHD
Sbjct: 727 GYNRNHQGAGLGLTISKQLVALMGGNMAVESEEGVGTTFAFCVTFSKEVQPHD 779


>gi|223984863|ref|ZP_03634970.1| hypothetical protein HOLDEFILI_02269 [Holdemania filiformis DSM
           12042]
 gi|223963156|gb|EEF67561.1| hypothetical protein HOLDEFILI_02269 [Holdemania filiformis DSM
           12042]
          Length = 989

 Score =  301 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 96/419 (22%), Positives = 177/419 (42%), Gaps = 17/419 (4%)

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
           E++  +  I F  A      +    +      +   +++ +        I E       +
Sbjct: 281 ESAEILQLISFALAGLLIALVLITVLLLSRQASSSREQERKRREQLFQIISENVDFAFLL 340

Query: 468 INREGI-ILSTNRAVSKLFGYPVEDILRKP---FTVFLEQNTPSVMNHYLTEILSLDLRQ 523
                  +   +  V  LF    +D +R P   F              +L   L+   R 
Sbjct: 341 YTPSKRKVEMLSENVRVLFNIEPDDAVRHPERLFLSCGMPEQDPAGRAFLNGQLNQRQRC 400

Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
                    T  E    + I    +     Y   +H+ +     +  L+ A + +++ + 
Sbjct: 401 ----EYQQGTANELQRWIEIYFIPVHADQ-YLAVLHETTPEHHMRQDLADALRQSQENNQ 455

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
            ++ F + +SH+IRTP+  IIG + + +     P    +     + I  +   +LD++N+
Sbjct: 456 ARTVFFSSMSHDIRTPMNGIIGMTTIAQAHLNEP---EKVAHCLDKISLASQHLLDLINE 512

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN-NIPRILADLR 702
           +LD+S+IESGK++L  EPV+L + +S+ + LV+    +KR  +    +  +   +L D  
Sbjct: 513 VLDMSRIESGKISLKKEPVNLSQLISDVLILVKPDLTKKRQTLHIRSSALDYDTVLGDTL 572

Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMK 758
            +++I LN+LSNA+ +TP    I I      + +    VI  V DTG+GMT   L +   
Sbjct: 573 HLQKILLNLLSNAVKYTPPEQDITIGLHEEPDGDDKIKVIFTVEDTGIGMTPEFLTRIFT 632

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
           PF +  +S+  +  GTGLG+ + K +VD   G   + S    G+   +  PL     P 
Sbjct: 633 PFERAQDSRISQISGTGLGMAITKNIVDMMSGTLQVESQLGVGSKFTVTLPLSTAQTPQ 691


>gi|228940724|ref|ZP_04103287.1| hypothetical protein bthur0008_33670 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228818968|gb|EEM65030.1| hypothetical protein bthur0008_33670 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|326941356|gb|AEA17252.1| sensor protein atoS [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 510

 Score =  301 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 95/523 (18%), Positives = 196/523 (37%), Gaps = 39/523 (7%)

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDD 359
            + +                +     +  P     +   G + + NPS   +  Y S++ 
Sbjct: 13  RHPNISRRLRNHIQDRSLTEMYASLFEHNPDSIISLNLEGVILHINPSAERILGYTSLE- 71

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
           +E     S L       + +  + V+    +         + +I       L +      
Sbjct: 72  LEQKNITSIL-------EAHISEQVLQNIKNTEADNQQEYILSIYHKNGFLLDVVTKLVP 124

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
              Q         ++P +   RI +  ++    +L +++ +    +   + EG  L  N 
Sbjct: 125 IFVQNRLTGVYAIMKPLEKSERI-ENMLKESEKRLRTLVNSMPAFVIFKDHEGRWLEAND 183

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMN----HYLTEILSLDLRQTLEKITLGSTKE 535
                F +       K  +  ++ N            + E+     RQ L        ++
Sbjct: 184 YALSCFNFHHVPYHGKKDSELIQYNEAYREAFLHCEEIDELAWQ-QRQILHGEEFIIHRD 242

Query: 536 EKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
           +  L L I    L           +   D++E K+ +  L  ++K+A           A 
Sbjct: 243 DFDLILSISKVPLYHPDGSRKGLIVMGRDVTELKETEKLLRKSEKLAVV-----GQLTAG 297

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           ++HEIR PLT++ GF  ++      P  +     Y + +    + +  I +  + +SK +
Sbjct: 298 IAHEIRNPLTSLKGFLTLLL-----PEISEEQKWYIDVMLSEISQMESITSQFMAMSKPQ 352

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
                L  +  ++   + E ++ +   A    + I     + +  I  D   +KQ+ +NI
Sbjct: 353 ----VLSIQTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYVYDIQCDGNQLKQVFINI 408

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           L NAI   P+GG I I T    +  +++R+ D G G+    + +  +PF        ++ 
Sbjct: 409 LKNAIEAMPNGGNIFIQTKPLEDNFILIRIMDEGCGIPEDRISRLGEPFY------SLKE 462

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           +GTGLGL +   +++ + G+ +I S   KGT+++I  PL  + 
Sbjct: 463 KGTGLGLMMCYKIIEEHHGRLHISSELNKGTIVDIELPLSSSH 505


>gi|229160527|ref|ZP_04288522.1| hypothetical protein bcere0009_13190 [Bacillus cereus R309803]
 gi|228622937|gb|EEK79768.1| hypothetical protein bcere0009_13190 [Bacillus cereus R309803]
          Length = 591

 Score =  301 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 81/371 (21%), Positives = 153/371 (41%), Gaps = 39/371 (10%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            ++ E  QL SIL + +DG+  +N+EG ++  N           E+       + L +  
Sbjct: 249 ALQQEKEQLASILSSMADGVITLNQEGAVVVINPPAEHFLQVWQEEK-----EIELSKKL 303

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
           PS +      ++  + +Q +E        +   + L   +            + D++E +
Sbjct: 304 PSELVELFHLVVESEQQQVVEINLQ----KGNYVVLMTPLYNQTKIRGAVAVLRDMTEER 359

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + +                + DF+A VSHE+RTP+  + G+SE I +            E
Sbjct: 360 RLE--------------KMRQDFIANVSHELRTPMVMLQGYSEAILDDIVQT--KEEINE 403

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           +   I      +  +VN+LLD++++ESG + LH   V +   V +     Q  A +K + 
Sbjct: 404 FVQIIYDESVRLGKLVNELLDLARMESGNVELHIGEVDIHPFVEKIGRKFQGIAKDKEVA 463

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +     N I +   D   ++Q+  N++ NAI  T +GG + +     +N  +I  V+D+G
Sbjct: 464 LTVDLKNPIEQYPFDADRMEQVLTNLIDNAIRHTNAGGHVTLVIDTKNNG-LIFEVQDSG 522

Query: 746 VGMTNYELEKAMKPFGQIPNSQQI-------RGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
            G+   ++      F +   ++          G        +AK +V  + GK  + S  
Sbjct: 523 AGIPEEDIPFLFDRFYKADKARTRGKKGGTGLGL------AIAKNIVQGHDGKIAVSSVV 576

Query: 799 AKGTLIEIIFP 809
            KGT   +  P
Sbjct: 577 GKGTTFSVYLP 587


>gi|320104503|ref|YP_004180094.1| PAS/PAC sensor hybrid histidine kinase [Isosphaera pallida ATCC
           43644]
 gi|319751785|gb|ADV63545.1| PAS/PAC sensor hybrid histidine kinase [Isosphaera pallida ATCC
           43644]
          Length = 867

 Score =  301 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 105/544 (19%), Positives = 208/544 (38%), Gaps = 50/544 (9%)

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365
                          +   +++  +    + S G + YANP+   +        +     
Sbjct: 20  PASESPDSQTTVRLDSERILNQTAVGLIALDSKGTILYANPAAAKILGLSQEHVLGCC-- 77

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
                D     +   ++       +    A +A+    + + +    +T           
Sbjct: 78  ---YYDFLDPVEVEQVRKRHQGLMEGRLPAYTAKKRFRRRDGDVVETLT-TAISAPVPEL 133

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
            +        +    +  + ++     +  S +        I +  G +   N  + KL 
Sbjct: 134 NSKILISQSIDFTMLKWVEYELYSSRTRFESFMRHAPVCGWIEDGRGRLSQANPQLLKLL 193

Query: 486 GYPVEDI--------------LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
                 +              L      +  +  P V++H +  +  +       +  L 
Sbjct: 194 NLEESSLSVGNDPDHAISIGQLPLNLADWCLEPLPPVVDHPIETLTPIQNALGDRRELLI 253

Query: 532 STKEEKLLSLRIIIKK------LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
                    L +   +      +  S        D+++ ++ + +L  A++ AE+ +  K
Sbjct: 254 CR-----FPLNLPEHENEGSPLVTESQNVGGVGIDLTDLRRAQAELEQARRTAEQANQAK 308

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
           + FLA   HEIRTPLTAI+GF+EV+  +      +P+  E    I  +G+ +  ++ND L
Sbjct: 309 TAFLAHFGHEIRTPLTAILGFTEVLHERLG---HDPQSAEALEAIQSAGSHLKMLLNDFL 365

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSV 704
           D+SKIESGK+ L    +   E   E  ++ Q  A  K I +      + P  +  D   +
Sbjct: 366 DLSKIESGKLELAPTSIDPWELAVEVATINQGQAQAKGIRLGVEANASTPLLVHVDTTRL 425

Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTS----------NEEVILRVRDTGVGMTNYELE 754
           +Q+  N++ NAI F+  GG + IS   +              ++ +VRD G GMT  ++ 
Sbjct: 426 RQVLFNLVGNAIKFS-QGGDVTISLIGSEPNASDSDTDGRSTLVWQVRDQGPGMTADQVA 484

Query: 755 KAMKPFGQIPNSQQIRG--EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
           +  +PF Q+  +        G+GLGL ++K++V+   G   + S P +GT ++   P+ D
Sbjct: 485 RLFEPFHQVGTANPRDTLSSGSGLGLVISKSLVELMGGTIQVVSHPGRGTTVQFELPI-D 543

Query: 813 TSHP 816
            + P
Sbjct: 544 PATP 547



 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 42/366 (11%), Positives = 94/366 (25%), Gaps = 27/366 (7%)

Query: 38  KSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKE 97
           K+   NP  D   +S  +       S      +    +             +D+ G +  
Sbjct: 10  KAIGSNPLADPASESPDSQTTVRLDSERILNQTAVGLI------------ALDSKGTILY 57

Query: 98  ISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN--TWYGKTTLWPIEGT 155
            +    K +G     ++G    D  D + ++        L       +  K      +G 
Sbjct: 58  ANPAAAKILGLSQEHVLGCCYYDFLDPVEVEQVRKRHQGLMEGRLPAYTAKKRFRRRDGD 117

Query: 156 NLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHS 215
            +       + P+   N +    +         +             +F           
Sbjct: 118 VVETLTTAISAPVPELNSKILISQSI----DFTMLKWVEYELYSSRTRFESFMRHAPVCG 173

Query: 216 SVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDF 275
            +E  +  +      P  L++ N   S        D  +   + PL  ++    P     
Sbjct: 174 WIEDGRGRLSQAN--PQLLKLLNLEESSLSVGNDPDHAISIGQLPLNLADWCLEPLPPVV 231

Query: 276 HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC----PI 331
                     +   G  +      F      +    S    E +N+    +D        
Sbjct: 232 DHPIETLTPIQNALGDRRELLICRFPLNLPEHENEGSPLVTESQNVGGVGIDLTDLRRAQ 291

Query: 332 PFFVYSHGNLFYANP---SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388
                +      AN    +FL    ++    +    G + +L      D  + + +   +
Sbjct: 292 AELEQARRTAEQANQAKTAFLAHFGHEIRTPLTAILGFTEVLHERLGHDPQSAEALEAIQ 351

Query: 389 SDRTCI 394
           S  + +
Sbjct: 352 SAGSHL 357


>gi|167905032|ref|ZP_02492237.1| histidine kinase/response regulator fusion protein [Burkholderia
           pseudomallei NCTC 13177]
          Length = 922

 Score =  301 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 126/671 (18%), Positives = 229/671 (34%), Gaps = 48/671 (7%)

Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH 233
           +F   +G+ ++H  +      A+G     +          + ++ + +  +   QSP P 
Sbjct: 20  QFDAHQGYAVLHTPQGAPAALAVGIPAPGRS---ASAFAPYLALLETQLLMGDGQSPLPD 76

Query: 234 LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293
            R++    S    Y       + +         S+                 +     + 
Sbjct: 77  DRVEGYSFSPDGTYLSLLWSREDQAPEAFIESHSASGL---IGDAMRGIRYLRDASTIVP 133

Query: 294 NNSKESFEYLSHRNHP--------SLSAYFDEGENLTPETVDKCPIPFF-----VYSHGN 340
             +     +L     P         +    D    L    V   P+  F         G+
Sbjct: 134 LRADRRTVWLPPHPDPLTGKPMIRIVQPAIDATGKLFAIYVRSLPLDMFYSNLNDAPAGS 193

Query: 341 LFYANPSFLLLTKYKSVDDIEIAGGLSTL----LDAPKLSDNNAIKPVMLYRSDRTCIAA 396
                     +    S          S L    L           +  M   SD+     
Sbjct: 194 TLTIVDRKGNVILGSSNQHGGGGATASALGIRSLGDGFGGLVERYQDGMFVTSDQLPGTD 253

Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR------INKRKMEIE 450
              +H   W    + A+              +    +     D +         +++   
Sbjct: 254 WVLVHAYSWK-TIAAALALRFSLVTGLVAGIIVMLWLFAIQFDRKGLIPNYRRAQRLLES 312

Query: 451 VMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
            +   +IL     G+ +++  +G +L  N A+ +L     ++ L                
Sbjct: 313 EVLNRTILRTAPVGLGLLSAQDGSVLLQNNAMLELSARTSDEPLPIRLWEAYRHAVGRSS 372

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN 569
           +               +            L   ++  +   ++    T+ DIS  K+ + 
Sbjct: 373 DE-------DGALLQHDLAIEREGANPVYLQANVVAARYRGANVLLCTLLDISLRKESEL 425

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           KL  A+  A++ +  KS FLA +SHEIRTPL AIIG  E+++        + +  E  + 
Sbjct: 426 KLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPL----SEQQSERLHV 481

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           ++   N +L I+ND+LD+SK+ESG+M L   P  +   + E +      A  K + + +S
Sbjct: 482 VESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAYAPLAESKGLALLSS 541

Query: 690 FANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIST----THTSNEEVILRVRDT 744
               + R    D   ++Q+  N++ NAI FT  G  I I             + + V DT
Sbjct: 542 IGEGVARHYAGDPTRIRQVLSNLIGNAIKFTERG-HISIDVHRAKAARDGSAIEIWVNDT 600

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G+    +      + Q   S   R  G+GLGLPL + +V    G   I S P  GT +
Sbjct: 601 GIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGTTV 660

Query: 805 EIIFPLYDTSH 815
            +  PL +  H
Sbjct: 661 TVALPLREARH 671


>gi|71908503|ref|YP_286090.1| peptidase M52, hydrogen uptake protein [Dechloromonas aromatica
           RCB]
 gi|71848124|gb|AAZ47620.1| Peptidase M52, hydrogen uptake protein [Dechloromonas aromatica
           RCB]
          Length = 1053

 Score =  301 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 91/458 (19%), Positives = 170/458 (37%), Gaps = 68/458 (14%)

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI-------LEATSDGIA 466
           T     +A +         ++    +      ++     QL  +       ++  ++ I 
Sbjct: 167 TLRQANRALEAELTKCTEALDQLISEQENQNDELRHRSRQLAMLQGTVDRAIDTMAEIIV 226

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS-------- 518
           ++  +G +  TNR +    GY  E ++   F   L     + +   L             
Sbjct: 227 MLGPDGRVTRTNRLLEIELGYTAESLVGGYFEDCLPLAGQNALRALLPAGAKPPLLLNAI 286

Query: 519 LDLRQTLEKITLGSTKE-------EKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQE 567
                           +       E  +   +    +           +   +IS  K  
Sbjct: 287 RAAGGHFVAELNFRRADAASEHDLEGTVPYLVHASLIHSQAGKLEGAIVISTNISVLKAR 346

Query: 568 KNKLSHA--------------------------------KKIAEKESSHKSDFLARVSHE 595
           +  L +                                 K+ AE+ S  KS+FL+ +SHE
Sbjct: 347 EKALRNNERQLHETAEELRNHRDNLAAMVEEQTRDLRQAKEQAEEASRAKSEFLSNMSHE 406

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           +RTPL AI+G S++          NP+  ++ + I  + + +L I+ND+LD S+IE+GK+
Sbjct: 407 VRTPLNAILGLSDLCLQTPL----NPQQNQHLSKIRLAADHLLGIINDILDFSRIEAGKL 462

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSN 714
           ++      L   + E   L+     EK + +    A    R  + D   +KQ+ +N+L N
Sbjct: 463 SIEKLIFELPSLLEEISDLLIGRIEEKNLELCVDIAAEASRSFVGDPLRLKQVIINLLGN 522

Query: 715 AIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           AI F+  G  + +     S +     +   V D G+G++  +       F Q   S   R
Sbjct: 523 AIKFSDQGS-VRLGCRIDSTDHNSTSLHFSVSDEGIGISEEQQNALFSAFSQADTSTTRR 581

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
             G+GLGL ++K +V+   G+ ++ STP  G+      
Sbjct: 582 FGGSGLGLVISKRLVELMGGRIWLESTPGNGSTFHFTI 619



 Score = 50.8 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 40/326 (12%), Positives = 87/326 (26%), Gaps = 36/326 (11%)

Query: 28  KKIDNGFETEKSKKENPCHDSFEQ--SNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRF 85
           ++ +   E E +K    C ++ +Q  S   +QN E    +  L      V   I      
Sbjct: 169 RQANRALEAELTK----CTEALDQLISEQENQNDELRHRSRQLAMLQGTVDRAIDTMAEI 224

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD-----------ILHIDPNNHIG 134
              +   G +   +  L   +G  A  ++G    D                   P   + 
Sbjct: 225 IVMLGPDGRVTRTNRLLEIELGYTAESLVGGYFEDCLPLAGQNALRALLPAGAKPPLLLN 284

Query: 135 DLLKRQNTWYGKTTLWPIEGTNLY-----VPIDLAALPIYSRNREFSGFRGFGIVHVNRV 189
            +      +  +      +  + +     VP  + A  I+S+  +  G     I     V
Sbjct: 285 AIRAAGGHFVAELNFRRADAASEHDLEGTVPYLVHASLIHSQAGKLEGA--IVISTNISV 342

Query: 190 DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYD------IFSQQSPPPHLRMKNKVSSL 243
                   +  +++     E  + H        +        +++      R K++  S 
Sbjct: 343 LKAREKALRNNERQLHETAEELRNHRDNLAAMVEEQTRDLRQAKEQAEEASRAKSEFLSN 402

Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303
             +              L      +  +      ++  +       G + +    S    
Sbjct: 403 MSHEVRTPLNAILGLSDLCLQTPLNPQQN---QHLSKIRLAADHLLGIINDILDFSR--- 456

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKC 329
                 S+     E  +L  E  D  
Sbjct: 457 IEAGKLSIEKLIFELPSLLEEISDLL 482


>gi|228986732|ref|ZP_04146862.1| hypothetical protein bthur0001_34090 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228773063|gb|EEM21499.1| hypothetical protein bthur0001_34090 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 510

 Score =  301 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 98/528 (18%), Positives = 198/528 (37%), Gaps = 37/528 (7%)

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTK 353
           +S +   + +                +     +  P     +   G + + NPS   +  
Sbjct: 7   SSTQRKRHPNISRRLRNHIQDRSLTEMYASLFEHNPDGIISLNLEGIIIHTNPSAERILG 66

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
           Y S + +E     S L       + +  + V+    +         + +I       L +
Sbjct: 67  YTSSE-LERKSITSIL-------EAHISEQVLQNIKNTKADNQHEYILSIYHKNGFLLDV 118

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
                    Q         ++P +   RI ++ ++    +L +++ +    +   + EG 
Sbjct: 119 VTKLVPIFVQNRLTGVYAIMKPLEKSERI-EKMLKESEKRLRTLVNSMPAFVIFKDHEGR 177

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQ-NTPSVMNHYLTEILSLD--LRQTLEKITL 530
            L  N      F +       K  +  ++          +  E+  L    RQ L     
Sbjct: 178 WLEANDYALSCFNFHHVPYRGKKDSELIQYNEAYREAFLHCEEVDELAWKQRQILHGEEF 237

Query: 531 GSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
              +++  L L I    L           +   D++E K+ +  L  ++K+A        
Sbjct: 238 IIHRDDFDLILSISKVPLYHPDGSRKGLIVMGRDVTELKETEKLLRKSEKLAVV-----G 292

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
              A ++HEIR PLT++ GF  ++      P  N     Y + +    + +  I +  + 
Sbjct: 293 QLTAGIAHEIRNPLTSLKGFLTLLL-----PEINEEQKWYIDVMLSEISQMESITSQFMA 347

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706
           +SK +     L     ++   + E ++ +   A    + I     + +  I  D   +KQ
Sbjct: 348 MSKPQ----VLAIHTCNMQTLIEEVVTFILPTAIMHSVHIIMDHFDYVYDIQCDGNQLKQ 403

Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
           + +NIL NAI   P+GG I I T    +  +++R+ D G G+    + +  +PF      
Sbjct: 404 VFINILKNAIEAMPNGGNIFIQTKPLEDNFILIRIIDEGCGIPEDRISRLGEPFY----- 458

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
             ++ +GTGLGL +   +++ + GK +I S   KGT+++I  PL  + 
Sbjct: 459 -SLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTIVDIQLPLSSSH 505


>gi|254409964|ref|ZP_05023744.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196183000|gb|EDX77984.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 1946

 Score =  301 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 84/267 (31%), Positives = 138/267 (51%), Gaps = 26/267 (9%)

Query: 563  EWKQEKNKLSHAKKI---AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
            + +Q   +    +K    AE  +  KSDFLA +SHEIRTP+ A+IG + ++ + +     
Sbjct: 1231 QRQQLAEQNVAMEKAKQIAEAANRAKSDFLATMSHEIRTPMNAVIGMTGLLLDTQLSH-- 1288

Query: 620  NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
                 E+A  I  SG  +L I+ND+LD SKIESGK+ L  +P +L   + E++ L+   A
Sbjct: 1289 --EQAEFAETIRNSGEALLTIINDILDFSKIESGKLELEEQPFNLRTCIEESLDLLTPKA 1346

Query: 680  NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTT-------- 730
             EK I +   F  + P  I  D+  ++QI +N+LSNA+ FT  G ++ +S +        
Sbjct: 1347 AEKAIELAYLFDPHTPNTIRGDITRLRQILVNLLSNALKFTHQG-EVTVSVSSKRVSPQS 1405

Query: 731  ---------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
                          E++  V+DTG+G+    L++  K F Q+ +S      GTGLGL ++
Sbjct: 1406 LEQLSHRTNKEQQYEILFAVKDTGIGIPPDRLDRLFKAFSQVDSSTSRHYGGTGLGLVIS 1465

Query: 782  KAMVDANMGKFYIFSTPAKGTLIEIIF 808
            K + +   G+ ++ S   KG++     
Sbjct: 1466 KRLSEMMGGRIWVESEVGKGSIFYFTI 1492



 Score = 91.2 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 26/324 (8%), Positives = 88/324 (27%), Gaps = 17/324 (5%)

Query: 274 DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF 333
           D+ T              L ++S            P ++             +      F
Sbjct: 381 DWQTEFSELTEVPSASRCLPSSSLVETPGDHAMEPPQVAHIVKTATERLELILRASQDGF 440

Query: 334 FVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR 391
           + ++   G++ Y +P +  +  Y   +          ++          +          
Sbjct: 441 WDWNMITGDI-YFSPRWKEMLGYADWELPNELASWEKVIFEEDRIAALKLIEDYNSGKVS 499

Query: 392 TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV 451
              A             +++ +      + +     +   G   +  D +  +  ++ E 
Sbjct: 500 RFQAV----QRFHHKNGSTVYILSRAIHQKDTADRVIRMVGTHTDITDRKQAEATLQAEY 555

Query: 452 MQLCSILEATSDGIAIINREG-----IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
                ++E   +G+ + +             N+ + ++ GY V++I R+ +      +  
Sbjct: 556 SFKTQLIERMGEGVCVCHSIETYPYIRFTVWNQQMVEITGYTVDEINRRGWYQTFYPDPK 615

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL---PFSSCYSLTMHDISE 563
                             + +       +     L I   ++      +     + D++E
Sbjct: 616 QRSQAVKRVAQMQRGEDLVAEEWDIVRADGSHRILSISTSRIETSENQTHILALIQDVTE 675

Query: 564 WKQEK--NKLSHAKKIAEKESSHK 585
               +  ++    ++   +  + +
Sbjct: 676 RLHSETASQQQAERERLIRAIALR 699



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/292 (14%), Positives = 89/292 (30%), Gaps = 53/292 (18%)

Query: 452 MQLCSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRK--PFTVFLEQNTPSV 508
            +L  IL A+ DG    N   G I   +    ++ GY   ++  +   +   + +     
Sbjct: 427 ERLELILRASQDGFWDWNMITGDI-YFSPRWKEMLGYADWELPNELASWEKVIFEEDRIA 485

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEW 564
               + +  +       + +     K    + +         ++        T  DI++ 
Sbjct: 486 ALKLIEDY-NSGKVSRFQAVQRFHHKNGSTVYILSRAIHQKDTADRVIRMVGTHTDITDR 544

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEI-----------RTPLTAIIGFS-EVIKN 612
           KQ +  L        +      + +  V H I              +  I G++ + I  
Sbjct: 545 KQAEATLQAEYSFKTQLIERMGEGV-CVCHSIETYPYIRFTVWNQQMVEITGYTVDEINR 603

Query: 613 QRFGPL--GNPRYIEYANYIDRSGNLVLDIV------------NDLLDI--SKIESGKMN 656
           + +      +P+    A           D+V            + +L I  S+IE+ +  
Sbjct: 604 RGWYQTFYPDPKQRSQAVKRVAQMQRGEDLVAEEWDIVRADGSHRILSISTSRIETSENQ 663

Query: 657 LHFEPVSLDEAVSEAISLV------QLYANEKR----ILIRTSFANNIPRIL 698
            H     +   + +    +      Q  A  +R    I +R   +  +  IL
Sbjct: 664 TH-----ILALIQDVTERLHSETASQQQAERERLIRAIALRIHQSLELEDIL 710



 Score = 40.0 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 27/379 (7%), Positives = 88/379 (23%), Gaps = 29/379 (7%)

Query: 94  YLKEISEELPKTIGNYAFKMIGMRLCDVSDIL---HIDPNNHIGDLLKRQNTWYGKTTLW 150
                ++++ +  G    ++                      +  + + ++    +  + 
Sbjct: 582 RFTVWNQQMVEITGYTVDEINRRGWYQTFYPDPKQRSQAVKRVAQMQRGEDLVAEEWDIV 641

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
             +G++  + I  + +                ++             ++  ++   +  I
Sbjct: 642 RADGSHRILSISTSRIETSENQTHI-----LALIQDVTERLHSETASQQQAERERLIRAI 696

Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270
                   + +  + +  +   H    ++V      Y    D         + SE  S+ 
Sbjct: 697 ALRIHQSLELEDILHTTVTEVRHFLQTDRVL----IYRFNPDWSGVVAVESVESETLSML 752

Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330
            Q  +      +   +   G +          ++      L+        + P       
Sbjct: 753 GQTIYDPCFGEKSAVRYQQGYINTLEDTHTADIATCYRDFLADLHVRANLVVPILQGSQL 812

Query: 331 IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL----------LDAPKLSDNNA 380
               +  H              +   +D ++       +          L    +    A
Sbjct: 813 WGLLIAHH-------CHHPRHWQTVDIDLLQQLATQVAIAIQQSELYQQLSTELVERKQA 865

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
              +         I+A AR      +    L  T        Q    +            
Sbjct: 866 ETALRQQAERERLISAIARRIRQSLHLTEILNTTVTEVRHFLQTDRVLIYRFNPDWSGVV 925

Query: 441 RINKRKMEIEVMQLCSILE 459
            +    ++   +   +I +
Sbjct: 926 EVESVAVKELSVLGRTIFD 944


>gi|330800409|ref|XP_003288229.1| hypothetical protein DICPUDRAFT_152450 [Dictyostelium purpureum]
 gi|325081737|gb|EGC35242.1| hypothetical protein DICPUDRAFT_152450 [Dictyostelium purpureum]
          Length = 1400

 Score =  301 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 92/396 (23%), Positives = 162/396 (40%), Gaps = 33/396 (8%)

Query: 446 KMEIEVMQLCSI----------LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
           ++ +E+ Q+ +I          L+     +A+++  G +L  N    +  G     I   
Sbjct: 51  ELILELQQMRAITISNKNARIMLDEMYQFVALLDVNGNLLDVNEPALQGGGMIRASIQGI 110

Query: 496 PFTVFLEQNTPSVMNHYLTEI---LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
           PF       T       + E     S       E    G +   + +++   +  L    
Sbjct: 111 PFWDCRWWATSQENIDNVREAVHKASKGEFIRYETEIFGKSAGTEKITIDFSLMPLFNDK 170

Query: 553 CYSLTM----HDISEWKQEKNKLSHAKKIAE-------KESSHKSDFLARVSHEIRTPLT 601
                +     +I+E +  + ++               +    K+ F A VSHE+RTPL 
Sbjct: 171 GEVSLILPEGRNITEKRLGEIEIERKNNELRSLYEKIKELDELKTQFFANVSHELRTPLA 230

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
            I+G ++ +  +      +    +  + + R+   +L IVN+LLDIS++E+GKMNL++  
Sbjct: 231 LIVGPTDKLLKEEN---LSENVRKDLDIVARNSRSLLKIVNNLLDISRLEAGKMNLNYSM 287

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTP 720
           V+L + V    S  ++ A EK +        +IP + A D   ++++  N+LSNA  FTP
Sbjct: 288 VNLSQTVHLIASCFEILAREKSLDFSI-ITPSIPLMAAIDADKMQRVITNLLSNAFKFTP 346

Query: 721 SGGQIIISTTHTS----NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
           SGG +                 + V DTG G+     E   + F Q+  +   +  GTGL
Sbjct: 347 SGGSVKCILEKFDISPTVPGFQIIVSDTGPGIPEKLHEIIFERFRQVDGTNTRKHGGTGL 406

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
           GL + K  V  + G   I +    G    +  PL  
Sbjct: 407 GLSIVKEFVTLHGGTVSIHNGSKCGAQFTLRIPLSP 442



 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 62/270 (22%), Positives = 111/270 (41%), Gaps = 30/270 (11%)

Query: 570  KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
            +L   + +    +  K +F   +SHE+RTPL  I+G+ +++         +         
Sbjct: 733  ELEKERNLLNNTNKSKDEFFMNLSHELRTPLNGILGWCQLLLYD-LDSSDDSTIRTGLQT 791

Query: 630  IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
            I+R  +    ++NDLLD+S I   K +L    V L   +  AI+ + + A  K I I T+
Sbjct: 792  IERCASSQNQLINDLLDMSLIIGDKFSLIMGEVDLPLLIQNAIASILVSAQSKHITIDTN 851

Query: 690  F--ANNIPRI----LADLRSVKQIALNILSNAIHFTPSGGQIIIS--------------- 728
                   P++      D   ++Q+  N+LSN+I FT   G+I I                
Sbjct: 852  IEEPPQDPQVLQNLRGDKSRLQQVIWNLLSNSIKFTNENGKIEIHAKVLNQIPINELGFC 911

Query: 729  -------TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
                        +  ++L + D G G+ +  L      F Q   S      G G+GL + 
Sbjct: 912  SNPMFNPIQRQGDRWILLTISDNGKGIPHQFLPNVFDRFKQADCSSTRSYGGLGIGLSIT 971

Query: 782  KAMVDANMGKFYIFST-PAKGTLIEIIFPL 810
            + ++  + G  +  S    KG+   ++ P+
Sbjct: 972  QNIIHLHKGAVFANSQGENKGSQFTVVLPV 1001


>gi|303249390|ref|ZP_07335615.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio
           fructosovorans JJ]
 gi|302489208|gb|EFL49174.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio
           fructosovorans JJ]
          Length = 545

 Score =  301 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 83/405 (20%), Positives = 165/405 (40%), Gaps = 19/405 (4%)

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS-----ILEATSDGIAIINREGIILSTN 478
             ++        + +  ++   +  +  ++L         E +  GI + + EG +   N
Sbjct: 4   AADSTASASPSADALKRQVAALEALVSRLRLRQERCELFFERSVMGILLGDNEGNLFDAN 63

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
               +L GY +E+I        +  +   +++  +   ++               K+   
Sbjct: 64  PRALELLGYTLEEIRAANIRDLIHPDDMRMVSC-MAGPMASLAGLPFTIERRYRRKDGTW 122

Query: 539 LSLRIIIKKLPFSSC-YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
           L +++    L  +   +   + DIS  +  ++  + A       S  KS FLA +SHEIR
Sbjct: 123 LPVQVDFSPLDDTGQCFQAMLQDISARRAAEDAKNAALSQVRSASQAKSAFLANMSHEIR 182

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TPL  ++G  +++      P       EY      + + +L +++D+LD S ++ G M+L
Sbjct: 183 TPLNGVMGMLQLLLATPHSP----EQDEYMRTAMDAASALLRLLSDILDFSSLDGGTMSL 238

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAI 716
             E  ++ + +   I+     A  K +      A   P R+  D   ++Q+  N+  NAI
Sbjct: 239 SQELFTVSDVLDPIIASFAHEAAIKGLAFSCRVAPQTPARLRGDPARLRQLLYNLTGNAI 298

Query: 717 HFTPSGGQIIISTTHTSNEE------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
            +T  G ++ +        E      +   VRDTG+G+ + +L+  +  F Q   S    
Sbjct: 299 KYTTFG-RVELDVAPVEKPESPCMALLEFAVRDTGIGIPSEKLDHVLDAFAQADASVTRA 357

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
             G GLGL + +A+ +   G+  + S P +GT   +  P      
Sbjct: 358 HGGLGLGLTIVRAIAERMGGRILLSSQPGQGTEARVRLPFARPPE 402



 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/244 (10%), Positives = 68/244 (27%), Gaps = 15/244 (6%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK--RQNTWYGKT 147
           D  G L + +    + +G    ++    + D+     +   + +   +       +  + 
Sbjct: 54  DNEGNLFDANPRALELLGYTLEEIRAANIRDLIHPDDMRMVSCMAGPMASLAGLPFTIER 113

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                +GT  ++P+ +   P+    + F       ++                  +    
Sbjct: 114 RYRRKDGT--WLPVQVDFSPLDDTGQCFQ-----AMLQDISARRAAEDAKNAALSQVRSA 166

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
            + K    +    +         P +  M      L   ++ + D          ++   
Sbjct: 167 SQAKSAFLANMSHEIRT------PLNGVMGMLQLLLATPHSPEQDEYMRTAMDAASALLR 220

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
            L +  DF +++    +  Q   T+ +         +H       A+       TP  + 
Sbjct: 221 LLSDILDFSSLDGGTMSLSQELFTVSDVLDPIIASFAHEAAIKGLAFSCRVAPQTPARLR 280

Query: 328 KCPI 331
             P 
Sbjct: 281 GDPA 284


>gi|239906480|ref|YP_002953221.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239796346|dbj|BAH75335.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 863

 Score =  301 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 110/676 (16%), Positives = 231/676 (34%), Gaps = 61/676 (9%)

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS--- 241
               +     AL    ++ F        G+ ++      + +  +               
Sbjct: 47  QNEELRRSQIALNTAKERYFDLYDLAPVGYVTISGGGLLLETNLTAATMFSTNRSDLFRK 106

Query: 242 SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301
             +     +D  +  + +  L +              + +++          ++  ++  
Sbjct: 107 PFSSLILKQDQSIYYKLHNNLVATNMPEARDLRMMRSDGSEFWVHLSATIGHDSDGQAEI 166

Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-----HGNLFYANPSFLLLTKYKS 356
           +++  N  +     ++    + E +         +       G L + +PS   +T+Y  
Sbjct: 167 HIAI-NDITERKQAEDALRKSEEHLRIVSDNATDWEYWRGPDGKLKWVSPSCKEITEYTP 225

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
            + +  +      +  P+           L   +   +        I     + + +  I
Sbjct: 226 EEFMGESPLAIQQIVYPEDQGLWLEHLKQLDTQEPPHLELE---FRIIKRSGDVVWINHI 282

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKM-------------EIEVMQLCSILEATSD 463
                ++    + +     +    +  ++ +                      + E    
Sbjct: 283 CKPIYSREGVYLGRRVCNRDITARKTIEKALTFLATCCSARSGVAFFESLARYLAETLGM 342

Query: 464 GIAIINR---------------EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
               I+R               +G     N   + L   P  D++ K    F        
Sbjct: 343 DFVCIDRLEGDGLNARTLAVYFDGHFED-NITYA-LKDTPCGDVVGKESCCFPHDVRGLF 400

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS-----E 563
               + + +  +    +            +  +     K P+ +   L +  +      E
Sbjct: 401 PKDAVLQGMQAESYVGITLWDSAGRPNGLIAVIGRTPLKDPWLAESILQLAGVRAGGELE 460

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             Q +  L  AK  AE  +  KS FLA +SHEIRTPL  ++G  +++         N   
Sbjct: 461 RLQAEEALQSAKIAAESANKAKSVFLANMSHEIRTPLNGVLGMLQLL----DTTAPNDEQ 516

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            EY     +S N +  +++D+LDIS+IE+G+M++     ++         L  L A  K 
Sbjct: 517 KEYLLGAVQSTNRLARLLSDILDISRIEAGRMDIVELEFNIQNTWDSIKELFALEARRKG 576

Query: 684 ILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTH--------TSN 734
           +++      ++P +L  D   ++QI  N++ NA+ FT  G +I I  +         +S 
Sbjct: 577 LVLEFGCVKDLPLLLIGDEVRLRQILFNLVGNAVKFTEKG-KIRIDASLLPLLPSSKSSA 635

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
             V++ V DTGVG+    ++   +PF Q   S   R +G GLGL + + +V+   G   I
Sbjct: 636 IRVLITVHDTGVGIPEEYIKDIFEPFVQADGSYTRRFQGAGLGLSIVRRLVNLLGGDIAI 695

Query: 795 FSTPAKGTLIEIIFPL 810
            ST  +GT + +  PL
Sbjct: 696 DSTLGEGTTVYLSLPL 711



 Score = 88.9 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/333 (9%), Positives = 87/333 (26%), Gaps = 29/333 (8%)

Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
                 + +        E      ED   +       +          + S   L+    
Sbjct: 4   TLRQRAEEQTLANDAQGECVSMSPEDGRKVLHELRVHQIELEMQNEELRRSQIALNTAKE 63

Query: 309 PSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
                          +  D  P+    +   G L   N +   +      D        S
Sbjct: 64  ------------RYFDLYDLAPVGYVTISGGGLLLETNLTAATMFSTNRSDLFRKP--FS 109

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
           +L+     S    +   ++  +        AR   +  +  +   +        +   + 
Sbjct: 110 SLILKQDQSIYYKLHNNLVATNMP-----EARDLRMMRSDGSEFWVHLSATIGHDSDGQA 164

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
                I  +  + +  +  +      L  + +  +D       +G +   + +  ++  Y
Sbjct: 165 EIHIAI-NDITERKQAEDALRKSEEHLRIVSDNATDWEYWRGPDGKLKWVSPSCKEITEY 223

Query: 488 PVEDILRKP---FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
             E+ + +        +      +   +L ++ + +    LE       +   ++ +  I
Sbjct: 224 TPEEFMGESPLAIQQIVYPEDQGLWLEHLKQLDTQEPPH-LELEFRIIKRSGDVVWINHI 282

Query: 545 IKKLPFSSCYS----LTMHDISEWKQEKNKLSH 573
            K +           +   DI+  K  +  L+ 
Sbjct: 283 CKPIYSREGVYLGRRVCNRDITARKTIEKALTF 315



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/184 (15%), Positives = 70/184 (38%), Gaps = 1/184 (0%)

Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
            A   T+  + +           +       + Q  +E ++ + R ++  +     +   
Sbjct: 8   RAEEQTLANDAQGECVSMSPEDGRKVLHELRVHQIELEMQNEELRRSQIALNTAKERYFD 67

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           + +    G   I+  G++L TN   + +F     D+ RKPF+  + +   S+       +
Sbjct: 68  LYDLAPVGYVTISGGGLLLETNLTAATMFSTNRSDLFRKPFSSLILKQDQSIYYKLHNNL 127

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT-MHDISEWKQEKNKLSHAK 575
           ++ ++ +  +   + S   E  + L   I             ++DI+E KQ ++ L  ++
Sbjct: 128 VATNMPEARDLRMMRSDGSEFWVHLSATIGHDSDGQAEIHIAINDITERKQAEDALRKSE 187

Query: 576 KIAE 579
           +   
Sbjct: 188 EHLR 191



 Score = 40.0 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 19/119 (15%), Positives = 32/119 (26%), Gaps = 8/119 (6%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMR---LCDVSDILHIDPNNHIGDLLKRQNTW 143
           W     G LK +S    +       + +G     +  +               L  Q   
Sbjct: 203 WR-GPDGKLKWVSPSCKEITEYTPEEFMGESPLAIQQIVYPEDQGLWLEHLKQLDTQEPP 261

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIV-HVNRVDNDPRALGKRLD 201
           + +     I+ +   V I+    PIYSR   + G R   +                 L 
Sbjct: 262 HLELEFRIIKRSGDVVWINHICKPIYSREGVYLGRR---VCNRDITARKTIEKALTFLA 317


>gi|313639666|gb|EFS04457.1| sensor protein kinase WalK [Listeria seeligeri FSL S4-171]
          Length = 610

 Score =  301 bits (772), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 79/397 (19%), Positives = 166/397 (41%), Gaps = 27/397 (6%)

Query: 424 FPENMPQNGIEPEDVDTRINKRKM--EIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
             + + +       +  R+ + +   E E  +L S+L   +DG+   +R G ++  N   
Sbjct: 236 GVDEIGELADSFNTLTKRVQEAQAMTEGERRKLSSVLAYMTDGVIATDRRGKVILINTPA 295

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
            K+     E    +     L+          +    SL + ++                 
Sbjct: 296 EKMLRVKHESANGRSIIDVLDIGDKFQFEDLMEVDGSLTMDRSTSDKPYILRAN-----F 350

Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
            +I ++  F++     +HDI++ ++   +              + DF++ VSHE+RTPLT
Sbjct: 351 SVIQRETGFNNGVIAVLHDITDQEKVDQE--------------RRDFVSNVSHELRTPLT 396

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           ++  + E + +  +          +          ++ +VNDLL +S+++ G+  L    
Sbjct: 397 SMHSYLEALSDGAW--EDKEIAPRFLEVTQNETERMIRLVNDLLKLSRMDGGREQLEKSF 454

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           V+  +  +  I        ++ I+ +         I  D   V Q+  NI+SNA  ++P 
Sbjct: 455 VNFTDFFNHIIDX-XXMMKKETIMFKRHIPKEPVIIEIDEDKVMQVLDNIISNANKYSPD 513

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           GG+I        + E+ + + D G+G+ + +L      F ++  ++     GTGLGL +A
Sbjct: 514 GGRISFYLKKYED-EIEVSIADEGLGVPDEDLATIFDRFFRVDKARSREMGGTGLGLAIA 572

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
           + +++A+ G+ +     +KGT+I+   P   +  P D
Sbjct: 573 REVIEAHGGRIWAERNKSKGTIIKFTLP--YSDLPED 607


>gi|229195777|ref|ZP_04322537.1| hypothetical protein bcere0001_13410 [Bacillus cereus m1293]
 gi|228587674|gb|EEK45732.1| hypothetical protein bcere0001_13410 [Bacillus cereus m1293]
          Length = 591

 Score =  301 bits (772), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 80/371 (21%), Positives = 154/371 (41%), Gaps = 39/371 (10%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            ++ E  QL SIL + +DG+  +N+EG ++  N           E+       + L +  
Sbjct: 249 ALQQEKEQLASILSSMADGVITLNQEGEVVVINPPAEHFLQVWQEEK-----EIELSKKL 303

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
           PS +      ++  + +Q +E        +   + L   +            + D++E +
Sbjct: 304 PSELVELFHLVVESEQQQVVEINLQ----KGNYVVLMTPLYNQTKIRGAVAVLRDMTEER 359

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + +                + DF+A VSHE+RTP+  + G+SE I +            E
Sbjct: 360 RLE--------------KMRQDFIANVSHELRTPMVMLQGYSEAILDDIVQT--KEEINE 403

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           +   I      +  +VN+LLD++++ESG + LH   V +   V +     Q  A +K + 
Sbjct: 404 FVQIIYDESVRLGKLVNELLDLARMESGNVELHIGEVDIHPFVEKIGRKFQGIAKDKEVA 463

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +   F + I +   D   ++Q+  N++ NAI  T +GG + +     +N  +I  V+D+G
Sbjct: 464 LTVDFKDPIEQYPFDADRMEQVLTNLIDNAIRHTNAGGHVTLVIDTKNNG-LIFEVQDSG 522

Query: 746 VGMTNYELEKAMKPFGQIPNSQQI-------RGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
            G+   ++      F +   ++          G        +AK +V  + GK  + S  
Sbjct: 523 AGIPEEDIPFLFDRFYKADKARTRGKKGGTGLGL------AIAKNIVQGHDGKIAVSSVV 576

Query: 799 AKGTLIEIIFP 809
            +GT   +  P
Sbjct: 577 GEGTTFSVYLP 587


>gi|167826595|ref|ZP_02458066.1| two-component system sensor protein [Burkholderia pseudomallei 9]
          Length = 923

 Score =  301 bits (772), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 126/677 (18%), Positives = 231/677 (34%), Gaps = 59/677 (8%)

Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH 233
           +F   +G+ ++H  +      A+G     +          + ++ + +  +   QSP P 
Sbjct: 20  QFDAHQGYAVLHTPQGAPAALAVGIPAPGRS---ASAFAPYLALLETQLLMGDGQSPLPD 76

Query: 234 LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293
            R++    S    Y       + +         S+                 +     + 
Sbjct: 77  DRVEGYSFSPDGTYLSLLWSREDQAPEAFIESHSASGL---IGDAMRGIRYLRDASTIVP 133

Query: 294 NNSKESFEYLSHRNHP--------SLSAYFDEGENLTPETVDKCPIPFF----------- 334
             +     +L     P         +    D    L    V   P+  F           
Sbjct: 134 LRADRRTVWLPPHPDPLTGKPMIRIVQPAIDATGKLFAIYVRSLPLDMFYSNLNDAPAGS 193

Query: 335 ----VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390
               V   GN+   + +        +   + I       L           +  M   SD
Sbjct: 194 TLTIVDRKGNVILGSSNQHGGGGGATASALGI-----RSLGDGFGGLVERYQDGMFVTSD 248

Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR------INK 444
           +        +H   W    + A+              +    +     D +         
Sbjct: 249 QLPGTDWVLVHAYSWK-TIAAALALRFSLVTGLVAGIIVMLWLFAIQFDRKGLIPNYRRA 307

Query: 445 RKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
           +++    +   +IL     G+ +++  +G +L  N A+ +L      + L          
Sbjct: 308 QRLLESEVLNRTILRTAPVGLGLLSAQDGSVLLQNNAMLELSARTSGEPLPIRLWEAYRH 367

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                 +               +            L   ++  +   ++    T+ DIS 
Sbjct: 368 AVGRSSDE-------DGALLQHDLAIEREGANPVYLQANVVAARYRGANVLLCTLLDISL 420

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            K+ + KL  A+  A++ +  KS FLA +SHEIRTPL AIIG  E+++        + + 
Sbjct: 421 RKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPL----SEQQ 476

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            E  + ++   N +L I+ND+LD+SK+ESG+M L   P  +   + E +      A  K 
Sbjct: 477 SERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAYAPLAESKG 536

Query: 684 ILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIST----THTSNEEVI 738
           + + +S    + R    D   ++Q+  N++ NAI FT  G  I I             + 
Sbjct: 537 LALLSSIGEGVARHYTGDPTRIRQVLSNLIGNAIKFTERG-HISIDVHRAKAARDGSAIE 595

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           + V DTG+G+    +      + Q   S   R  G+GLGLPL + +V    G   I S P
Sbjct: 596 IWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLP 655

Query: 799 AKGTLIEIIFPLYDTSH 815
             GT + +  PL +  H
Sbjct: 656 DFGTTVTVALPLREARH 672


>gi|15964755|ref|NP_385108.1| putative sensor histidine kinase protein [Sinorhizobium meliloti
           1021]
 gi|7531256|sp|Q52969|Y1002_RHIME RecName: Full=Uncharacterized sensor-like histidine kinase R01002
 gi|15073933|emb|CAC45574.1| Putative sensor histidine kinase [Sinorhizobium meliloti 1021]
          Length = 525

 Score =  301 bits (772), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 101/351 (28%), Positives = 172/351 (49%), Gaps = 8/351 (2%)

Query: 465 IAIINREGIILSTNRA-VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
           + + +  G +LS +    S+      +    + F   +  +        +  +     R 
Sbjct: 115 VTVHDTRGHVLSVHGRDASEYLKLMRDP-HGRGFIEQIHVSDRIAFLRAIDSLRLDSERS 173

Query: 524 TLEKITLGSTKEE-KLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIA 578
            ++     ++ +  +   +   +  L  +            D+SE  + + + +     A
Sbjct: 174 AVDIRLERTSADGPQFAHIYCEMTPLRDAEGNLLAIVAQSRDVSEEARLQAEAAAKAAHA 233

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
           E  +  K+ FLA VSHE+RTPL AI+GFS+V+  + FG L N R  EY + I +SG  +L
Sbjct: 234 ESANDAKTRFLAAVSHELRTPLNAILGFSDVLAGEYFGKLENDRQREYVSLIHQSGTHLL 293

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
            +VN +LD+SKIE+G+  L  EP  + EA++   +++   A EK + + +    ++  I 
Sbjct: 294 SVVNTMLDMSKIEAGRYELLLEPFRVAEAIAACEAMLSHQAREKGVRLTSRVTRSVGEIN 353

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
           AD R+ +QI +N++ NAI FT  GG + +         + L V DTG+G+   +L+   +
Sbjct: 354 ADQRAFQQILINLIGNAIKFTDRGGLVTVDAALE-GNMLKLTVSDTGIGIAADKLQMLGQ 412

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           PF QI N    R EGTGLGL L K + + + G   I S   +GT+I +  P
Sbjct: 413 PFVQIQNDYTRRYEGTGLGLSLVKGLAELHGGDVSIRSAEGEGTVIVVTIP 463


>gi|121608266|ref|YP_996073.1| PAS/PAC sensor signal transduction histidine kinase
           [Verminephrobacter eiseniae EF01-2]
 gi|121552906|gb|ABM57055.1| multi-sensor signal transduction histidine kinase
           [Verminephrobacter eiseniae EF01-2]
          Length = 468

 Score =  301 bits (772), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 79/418 (18%), Positives = 159/418 (38%), Gaps = 43/418 (10%)

Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL---EATS 462
                L                +     +      R  + +++    +L  IL   +A+ 
Sbjct: 69  RGARVLHWLRTGDLADAPVVHGIWGEAADRALRLLRRQQARIQSSQDRLQEILTALQASP 128

Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP---SVMNHYLTEILSL 519
           +G+ +++ +G I   N+  +  FG+  +  + +     L          +  +   ++  
Sbjct: 129 NGVVLLDAQGRIEWCNQTAANHFGFDAQRDVMQSIGNLLRNPEFTAYYAVKDFSAAVVLE 188

Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM-HDISEWKQEKNKLSHAKKIA 578
               T  +             +RI +   P+    +L +  D++  +Q +          
Sbjct: 189 GRASTPSR------------PVRISVHLHPYGDGCTLLLSRDVTALEQAE---------- 226

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
               + + DF+A VSHEIRTPLT +IGF E ++     PL       Y   + +    + 
Sbjct: 227 ----AMRRDFVANVSHEIRTPLTVLIGFVETLQT---LPLSAEERSRYLGLMAQQALRMQ 279

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL---VQLYANEKRILIRTSFANNIP 695
           ++V DLL +S++E        E   +   +         +     + +  +    A  + 
Sbjct: 280 NVVQDLLTLSRLEGSPPPGMAEWTPVQSLLQRCEDEGRALSALLTQHQPHLLRFPAPEVL 339

Query: 696 RILAD----LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751
           R   D       ++    N+++NA+ +TP+GG I +      +   +  V DTG G+   
Sbjct: 340 RAQGDIAGVPAELQSALSNLINNAVRYTPAGGCISVQWKREPDGRAVFSVHDTGPGIAPE 399

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            + +  + F ++  S+     GTGLGL + K ++  +     I ST  KG+   + FP
Sbjct: 400 HIPRLTERFYRVDRSRSRETGGTGLGLAIVKHVLQRHGATLDINSTLGKGSAFSVTFP 457



 Score = 40.0 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 21/187 (11%), Positives = 53/187 (28%), Gaps = 5/187 (2%)

Query: 274 DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF 333
             H +             +   + +    L  R    + +  D  + +            
Sbjct: 73  VLHWLRTGDLADAPVVHGIWGEAADRALRLLRRQQARIQSSQDRLQEILTALQASPNGVV 132

Query: 334 FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393
            + + G + + N +      + +  D+  + G   LL  P+ +   A+K           
Sbjct: 133 LLDAQGRIEWCNQTAANHFGFDAQRDVMQSIGN--LLRNPEFTAYYAVKDFSAAVVLEGR 190

Query: 394 IAASARLHTIQWNRENS---LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450
            +  +R   I  +         +       A +  E M ++ +     + R     +   
Sbjct: 191 ASTPSRPVRISVHLHPYGDGCTLLLSRDVTALEQAEAMRRDFVANVSHEIRTPLTVLIGF 250

Query: 451 VMQLCSI 457
           V  L ++
Sbjct: 251 VETLQTL 257


>gi|307304331|ref|ZP_07584083.1| PAS/PAC sensor signal transduction histidine kinase [Sinorhizobium
           meliloti BL225C]
 gi|306902799|gb|EFN33392.1| PAS/PAC sensor signal transduction histidine kinase [Sinorhizobium
           meliloti BL225C]
          Length = 531

 Score =  301 bits (772), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 102/362 (28%), Positives = 176/362 (48%), Gaps = 8/362 (2%)

Query: 454 LCSILEATSDGIAIINREGIILSTNRA-VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
           L +  +  +  + + +  G +LS +    S+      +    + F   +  +        
Sbjct: 110 LNAAYDLFAGLVTVHDTRGHVLSVHGRDASEYLKLMRDP-HGRGFIEQIHVSDRIAFLRA 168

Query: 513 LTEILSLDLRQTLEKITLGSTKEE-KLLSLRIIIKKLPFSSC----YSLTMHDISEWKQE 567
           +  +     R  ++     ++ +  +   +   +  L  +            D+SE  + 
Sbjct: 169 IDSLRLDSERSAVDIRLERTSADGPQFAHIYCEMTPLRDAEGNLLAIVAQSRDVSEEARL 228

Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
           + + +     AE  +  K+ FLA VSHE+RTPL AI+GFS+V+  + FG L N R  EY 
Sbjct: 229 QAEAAAKAAHAESANDAKTRFLAAVSHELRTPLNAILGFSDVLAGEYFGKLENDRQREYV 288

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
           + I +SG  +L +VN +LD+SKIE+G+  L  EP  + EA++   +++   A EK + + 
Sbjct: 289 SLIHQSGTHLLSVVNTMLDMSKIEAGRYELLLEPFRVAEAIAACEAMLSHQAREKGVRLT 348

Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747
           +    ++  I AD R+ +QI +N++ NAI FT  GG + +         + L V DTG+G
Sbjct: 349 SRVTRSVGEINADQRAFQQILINLIGNAIKFTDRGGLVTVDAALE-GNMLKLTVSDTGIG 407

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           +   +L+   +PF QI N    R EGTGLGL L K + + + G   I S   +GT+I + 
Sbjct: 408 IAADKLQMLGQPFVQIQNDYTRRYEGTGLGLSLVKGLAELHGGDVSIRSAEGEGTVIVVT 467

Query: 808 FP 809
            P
Sbjct: 468 IP 469


>gi|167818207|ref|ZP_02449887.1| histidine kinase/response regulator fusion protein [Burkholderia
           pseudomallei 91]
          Length = 927

 Score =  301 bits (772), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 126/677 (18%), Positives = 231/677 (34%), Gaps = 59/677 (8%)

Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH 233
           +F   +G+ ++H  +      A+G     +          + ++ + +  +   QSP P 
Sbjct: 24  QFDAHQGYAVLHTPQGAPAALAVGIPAPGRS---ASAFAPYLALLETQLLMGDGQSPLPD 80

Query: 234 LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293
            R++    S    Y       + +         S+                 +     + 
Sbjct: 81  DRVEGYSFSPDGTYLSLLWSREDQAPEAFIESHSASGL---IGDAMRGIRYLRDASTIVP 137

Query: 294 NNSKESFEYLSHRNHPSL--------SAYFDEGENLTPETVDKCPIPFF----------- 334
             +     +L     P              D    L    V   P+  F           
Sbjct: 138 LRADRRTVWLPPHPDPLTGKPMIRIVQPAIDATGKLFAIYVRSLPLDMFYSNLNDAPAGS 197

Query: 335 ----VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390
               V   GN+   + +        +   + I       L           +  M   SD
Sbjct: 198 TLTIVDRKGNVILGSSNQHGGDGGATASALGI-----RSLGDGFGGLVERYQDGMFVTSD 252

Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR------INK 444
           +        +H   W    + A+              +    +     D +         
Sbjct: 253 QLPGTDWVLVHAYSWK-TIAAALALRFSLVTGLVAGIIVMLWLFAIQFDRKGLIPNYRRA 311

Query: 445 RKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
           +++    +   +IL     G+ +++  +G +L  N A+ +L     ++ L          
Sbjct: 312 QRLLESEVLNRTILRTAPVGLGLLSAQDGSVLLQNNAMLELSARTSDEPLPIRLWEAYRH 371

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                 +               +            L   ++  +   ++    T+ DIS 
Sbjct: 372 AVGRSSDE-------DGALLQHDLAIEREGANPVYLQANVVAARYRGANVLLCTLLDISL 424

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            K+ + KL  A+  A++ +  KS FLA +SHEIRTPL AIIG  E+++        + + 
Sbjct: 425 RKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPL----SEQQ 480

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            E  + ++   N +L I+ND+LD+SK+ESG+M L   P  +   + E +      A  K 
Sbjct: 481 SERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAYAPLAESKG 540

Query: 684 ILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIST----THTSNEEVI 738
           + + +S    + R    D   ++Q+  N++ NAI FT  G  I I             + 
Sbjct: 541 LALLSSIGEGVARHYAGDPTRIRQVLSNLIGNAIKFTERG-HISIDVHRAKAARDGSAIE 599

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           + V DTG+G+    +      + Q   S   R  G+GLGLPL + +V    G   I S P
Sbjct: 600 IWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLP 659

Query: 799 AKGTLIEIIFPLYDTSH 815
             GT + +  PL +  H
Sbjct: 660 DFGTTVTVALPLREARH 676


>gi|152964304|ref|YP_001360088.1| PAS/PAC sensor signal transduction histidine kinase [Kineococcus
           radiotolerans SRS30216]
 gi|151358821|gb|ABS01824.1| PAS/PAC sensor signal transduction histidine kinase [Kineococcus
           radiotolerans SRS30216]
          Length = 492

 Score =  301 bits (772), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 101/517 (19%), Positives = 193/517 (37%), Gaps = 49/517 (9%)

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
           + +   +  +      +   P+   V    G +   N +                   S+
Sbjct: 7   AAAPAGEPRDRGLEGLLAALPLGVLVVGAQGRVHAQNDAARAAFGLSGPAAFADVFPRSS 66

Query: 369 LLDAPKLSDNNAIK-----PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
               P               V+   +D T       +        +              
Sbjct: 67  PDAPPFAVRRADEAAPEPVEVVGRDADGTTFPVEVTVSPGPRPGTS-------------- 112

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
                    +  +       + ++  +      +LE+T+DG    +REG +L  N AV +
Sbjct: 113 -------LVLTRDLRGAARAEAELRRQRGLTELLLESTTDGFLGTDREGQVLFANTAVRR 165

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNH--YLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
           L      D++ +P      +   + +     L+++L            +   +    LS+
Sbjct: 166 LLRQRASDLVGRPLAQVGRRPADATLPDGPALSDVLDGSGEGAGGGRAVLWDRYGTPLSV 225

Query: 542 RIIIKKL---PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
           ++ +  L          LT+ D +E ++ +                K  F A VSHE+RT
Sbjct: 226 QVAVSPLITGEEVVGSVLTVRDATEQERVEE--------------LKRQFTAVVSHELRT 271

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
           PLTAI     ++ +   GPL            D + + +  +VND+LD+ ++++G M L 
Sbjct: 272 PLTAIKASLRLVTSGVLGPLPEEPAR-LLRIADENADRLAALVNDILDVERLDAGTMPLE 330

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718
            E V L +     +  ++  A    + +         R+ AD   + Q   N++ NA+ F
Sbjct: 331 PEDVDLADLARAGVEQLESTAVAAGVELVL-GEVGPARVHADPHRIAQALTNLVGNAVKF 389

Query: 719 TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
           + +GG++ ++   T+  E  L VRD G G+ + +LE     F Q+  S   R  G+GLGL
Sbjct: 390 SEAGGRVEVTCRRTAR-EARLAVRDEGRGIPHDQLEAVFDRFRQVYASDAQRQSGSGLGL 448

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            + K +V+ + G+  + S P +G+   ++ PL D   
Sbjct: 449 AITKGIVERSGGRVELRSRPNEGSEFTVVLPLTDAEE 485



 Score = 47.7 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 27/325 (8%), Positives = 82/325 (25%), Gaps = 15/325 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS---DILHIDPNNHIGDLLKRQNTWYG 145
            D  G +   +  + + +   A  ++G  L  V        +     + D+L       G
Sbjct: 150 TDREGQVLFANTAVRRLLRQRASDLVGRPLAQVGRRPADATLPDGPALSDVLDGSGEGAG 209

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
                  +     + + +A  P+       +G    G V   R   +   + +   +  +
Sbjct: 210 GGRAVLWDRYGTPLSVQVAVSPL------ITGEEVVGSVLTVRDATEQERVEELKRQFTA 263

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
            +    +   +  K    + +     P      ++  + +  A +   L  +   +   +
Sbjct: 264 VVSHELRTPLTAIKASLRLVTSGVLGPLPEEPARLLRIADENADRLAALVNDILDVERLD 323

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
             ++P + +   +        +   +    +      L       + A            
Sbjct: 324 AGTMPLEPEDVDLADLARAGVEQLESTAVAAGVEL-VLGEVGPARVHADPHRIAQALTNL 382

Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
           V       F  + G +               +   +   G+              +    
Sbjct: 383 VGNAVK--FSEAGGRVEVTCRRTAR---EARLAVRDEGRGIPHDQLEAVFDRFRQVYASD 437

Query: 386 LYRSDRTCIAASARLHTIQWNRENS 410
             R   + +  +     ++ +    
Sbjct: 438 AQRQSGSGLGLAITKGIVERSGGRV 462



 Score = 44.6 bits (104), Expect = 0.076,   Method: Composition-based stats.
 Identities = 35/361 (9%), Positives = 74/361 (20%), Gaps = 16/361 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           + A G +   ++      G            DV      D                 +  
Sbjct: 33  VGAQGRVHAQNDAARAAFGLSGPAA----FADVFPRSSPDAPPFAVRRADEAAPEPVEVV 88

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +GT   V + ++  P    +          +    R      A  +R       L 
Sbjct: 89  GRDADGTTFPVEVTVSPGPRPGTS--------LVLTRDLRGAARAEAELRRQRGLTELLL 140

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           E           +  +    +    L  +     +    A           P   +    
Sbjct: 141 ESTTDGFLGTDREGQVLFANTAVRRLLRQRASDLVGRPLAQVGRRPADATLPDGPALSDV 200

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
           L    +           + Y   L      S          S+    D  E    E + +
Sbjct: 201 LDGSGEGAGGGRAVLWDR-YGTPLSVQVAVSPLITGEEVVGSVLTVRDATEQERVEELKR 259

Query: 329 CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI--KPVML 386
                  +       A  + L L     +  +         +         A+    + +
Sbjct: 260 QFTAVVSHELRTPLTAIKASLRLVTSGVLGPLPEEPARLLRIADENADRLAALVNDILDV 319

Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
            R D   +        +  +   +          A      + + G      D     + 
Sbjct: 320 ERLDAGTMPLEPEDVDLA-DLARAGVEQLESTAVAAGVELVLGEVGPARVHADPHRIAQA 378

Query: 447 M 447
           +
Sbjct: 379 L 379


>gi|323488189|ref|ZP_08093440.1| Hybrid signal transduction histidine kinase [Planococcus
           donghaensis MPA1U2]
 gi|323398193|gb|EGA90988.1| Hybrid signal transduction histidine kinase [Planococcus
           donghaensis MPA1U2]
          Length = 953

 Score =  301 bits (772), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 83/423 (19%), Positives = 179/423 (42%), Gaps = 33/423 (7%)

Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPED---VDTRINKRKMEIEVMQLCSILEATS 462
           + +    +      +     E +  +G+       +D          E      I+   +
Sbjct: 406 DEDTVALIGLSRIGRTFTSEEELDISGLLKRIHLAIDRIQLYEAAVHERTLNERIINNIN 465

Query: 463 DGIAIINREGIILSTNRAVSKLFGY---PVEDILRKPFTVFLEQNT---PSVMNHYLTEI 516
           +GI  I++ G ++  N  +  +      P++  + K   V         P +M  +L+  
Sbjct: 466 EGIQFISKNGDMVQHNATMCTMLNCGNGPLDASIPKGIWVKRMAEQTTAPELMYKFLSNC 525

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-CYSLTMHDISEWKQEKNKLSHAK 575
           + +  ++            E+++ +      +            DI+             
Sbjct: 526 IQIKDKEANTFRYTVKVPYERVIDVYSTPVIVDGEKTGTIFVHRDITR------------ 573

Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
               +    KS+ ++ VSHE+RTPL++++GF+E++ N++  P    +   Y   I +   
Sbjct: 574 --EHEVDKMKSELVSTVSHELRTPLSSVLGFTELLLNKQLKP---EKQERYLKTIYKEAK 628

Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695
            + +++ND LD+ ++ESG      + ++++E + E +   +   N   I+     ++ I 
Sbjct: 629 RLTNLINDFLDLQRMESGDQVYRMDKLAVNELIIETVEKFRTQ-NMHSIVFIDDASDVI- 686

Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755
            +  D   + Q+ +N++ NAI F+P GG + IS        + + ++D G+G+   ++ K
Sbjct: 687 -VEGDRERIAQVLMNLVGNAIKFSPQGGSVTISMK-NDLNNLSVTIKDEGIGIPTEDIPK 744

Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
               F +I NS + +  GTGLGL + + ++  + GK +I S   +GT +    PL   + 
Sbjct: 745 LFSKFQRIDNSSRRKIGGTGLGLAICQEIILQHEGKIWIESKEEQGTAVHFELPL--VAE 802

Query: 816 PHD 818
           P +
Sbjct: 803 PQE 805


>gi|256423935|ref|YP_003124588.1| multi-sensor hybrid histidine kinase [Chitinophaga pinensis DSM
           2588]
 gi|256038843|gb|ACU62387.1| multi-sensor hybrid histidine kinase [Chitinophaga pinensis DSM
           2588]
          Length = 1016

 Score =  301 bits (772), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 109/553 (19%), Positives = 204/553 (36%), Gaps = 31/553 (5%)

Query: 283 YTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNL 341
            + +   G  +  +    E +SH           + E       +        +   G L
Sbjct: 75  RSLQWDRGQEKAIALLVQEIVSHITDHYHYEELLDSERNFRAFFENSHGLMCTHDLEGRL 134

Query: 342 FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401
              N +   +  Y   +       +  +  A  +      +     +   T   A   + 
Sbjct: 135 LSVNNACAAILGYTCEE-------MKDMTLADIVPAQYENELHAYLKKIGTEGKAHGLMI 187

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
           TI  +      +                  G   +  + ++ +R ++     L    + +
Sbjct: 188 TIHKDGTMGSVLFNNVL--FRNLKGESYVIGNAIDVTERQVLERDLKRTREILERTSQMS 245

Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPV--EDILRKPFTVFLEQNTPSVMNHYLTEILSL 519
             G    +     L  +     +   P   +  +      + E +    ++  L   +  
Sbjct: 246 RIGGWEADLVNRELFWSDVTKAIHEVPGNFQPTMATAIGFYKEGDNREAISEALRISVET 305

Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISEWKQEKNKLSHAKKIA 578
                L+   + +  +EK +      +           T  DIS  K+ +++L   K   
Sbjct: 306 GEAWDLQLQIITAKGQEKWVRAIGNAEFENGKCKRLYGTFQDISATKEAEHQLILQKSNL 365

Query: 579 EKE-------SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
                     +  KS+FLA +SHEIRTPL  +IGF+E++         N    +Y + ++
Sbjct: 366 AAAKQQAEQANMAKSEFLANMSHEIRTPLNGVIGFTELVLKTDL----NETQHQYLSIVN 421

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
           +S N +L I+ND+LD SKIESGK+ L  +   L E  S+   +V   A  K + +  + +
Sbjct: 422 QSANALLSIINDILDFSKIESGKLELDIDKYDLYEFSSQVSDIVSYQAQHKGLEMLLNVS 481

Query: 692 NNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTT-----HTSNEEVILRVRDTG 745
             +PR    D   +KQI +N+L NA+ FT S G+I +             ++   VRDTG
Sbjct: 482 TQLPRFAWFDEVRLKQILINLLGNAVKFT-SNGEIELKVHPLEFLEDDKAKIRFEVRDTG 540

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+   +  K  + F Q   S   +  GTGLGL ++  ++     + +I S  ++G+   
Sbjct: 541 IGIKPEKQLKIFEAFRQEDASTTKKYGGTGLGLTISNKLLALMGSELHIESGVSQGSTFY 600

Query: 806 IIFPLYDTSHPHD 818
               L     P +
Sbjct: 601 FDIVLTTVEAPAE 613



 Score = 44.6 bits (104), Expect = 0.068,   Method: Composition-based stats.
 Identities = 22/206 (10%), Positives = 50/206 (24%), Gaps = 11/206 (5%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D  G L  ++      +G    +M  M L D+    + +  +     +  +   +G    
Sbjct: 129 DLEGRLLSVNNACAAILGYTCEEMKDMTLADIVPAQYENELHAYLKKIGTEGKAHGLMIT 188

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
              +GT     +    +   +   E S   G  I              KR  +      +
Sbjct: 189 IHKDGTMG--SVLFNNVLFRNLKGE-SYVIGNAI--DVTERQVLERDLKRTREILERTSQ 243

Query: 210 IKKGHSSVEKEKYDIFSQQSPP------PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
           + +                         P        +++  Y    +    +E   +  
Sbjct: 244 MSRIGGWEADLVNRELFWSDVTKAIHEVPGNFQPTMATAIGFYKEGDNREAISEALRISV 303

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYF 289
               +   Q    T    +   +   
Sbjct: 304 ETGEAWDLQLQIITAKGQEKWVRAIG 329


>gi|254477790|ref|ZP_05091176.1| sensory box histidine kinase/response regulator [Ruegeria sp. R11]
 gi|214032033|gb|EEB72868.1| sensory box histidine kinase/response regulator [Ruegeria sp. R11]
          Length = 849

 Score =  301 bits (772), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 88/455 (19%), Positives = 189/455 (41%), Gaps = 13/455 (2%)

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
           P L++  A    ++     + +     L   +  +     +                   
Sbjct: 140 PDLAEQAAEIRPVVRDLSISALGHLVALTDARREQTGRTLVWLGLSVGGLIVALLALAGY 199

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
           +   +      + ++     ++  ++  + DG+ I +  G IL  N A  ++F  P +++
Sbjct: 200 LNHLNSQNVRRRAEVVEASRRMNVVMGTSLDGVIISDTTGRILEFNAAAEQIFAIPAQEV 259

Query: 493 LRKPFTVFLEQNTPSVMNHY-LTEILSLDLRQTL---EKITLGSTKEEKLLSLRIIIKKL 548
           + +     +  +     +   +  + +   R+ +              ++  + + I+  
Sbjct: 260 IGRDLADVIVPDHHKAAHAAGMARLRNGGTRRVVGSGRVRLEAKRATGEVFPVELAIQSA 319

Query: 549 PFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
             +    +   + DIS     + +L  A+ +A      K++FLA +SHEIRTPL  ++G 
Sbjct: 320 ETAQGEIFVAFLRDISAQVAAEEELVSARDLALAGEKAKTNFLATMSHEIRTPLNGLLGN 379

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
             ++++ R       R   Y   ++ SG L+L  +N +LDI+K ++G+++L    +++ +
Sbjct: 380 LTLLQDTRLTA----RQRRYIGNMETSGKLLLSHINGVLDITKYDAGRLHLRPVVMNISD 435

Query: 667 AVSEAISLVQLYANEKRILIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725
            V + I      A   + ++   +       I AD   ++ I +N++ NA+ FT +G +I
Sbjct: 436 LVQDIIDNQSASAAANQSVLEWQWDGPAKNWIRADKDRLQDILMNLVGNAVKFTHNG-RI 494

Query: 726 IISTT-HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
            ++         + + V DTG+G+T  ++    + F    +S      GTGLGL L K  
Sbjct: 495 RVTLACLGRENGLQIVVEDTGIGITPDQIRHVFEDFVTGDSSYARNVGGTGLGLALTKRF 554

Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819
           V A  G   + STP +G+   +  P+ +   P   
Sbjct: 555 VTALGGHIDVESTPGQGSSFIVELPVEEAEPPQPA 589



 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/154 (12%), Positives = 38/154 (24%), Gaps = 9/154 (5%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL-HIDPNNHIGDLLKRQNTW----Y 144
           D  G + E +    +     A ++IG  L DV     H   +      L+   T      
Sbjct: 236 DTTGRILEFNAAAEQIFAIPAQEVIGRDLADVIVPDHHKAAHAAGMARLRNGGTRRVVGS 295

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
           G+  L     T    P++LA     +   E         +                    
Sbjct: 296 GRVRLEAKRATGEVFPVELAIQSAETAQGEI----FVAFLRDISAQVAAEEELVSARDLA 351

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKN 238
               + K    +    +              +++
Sbjct: 352 LAGEKAKTNFLATMSHEIRTPLNGLLGNLTLLQD 385



 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/284 (7%), Positives = 65/284 (22%), Gaps = 8/284 (2%)

Query: 170 SRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS 229
             + + +  R    +  +R+     A      ++   L           +         +
Sbjct: 73  DGDGDLNTLRREFDIFYSRIRILNEAELYAPLRELPRLRTALGRVDGFLQAALPAIDASN 132

Query: 230 PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYF 289
                 + +      E      D+  +    L+   ++    ++   T+     +     
Sbjct: 133 VELRQNLPDLAEQAAEIRPVVRDLSISALGHLVALTDARR--EQTGRTLVWLGLSVGGLI 190

Query: 290 GTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSF 348
             L   +       S            E        +        +    G +   N + 
Sbjct: 191 VALLALAGYLNHLNSQNVRRRAEVV--EASRRMNVVMGTSLDGVIISDTTGRILEFNAAA 248

Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
             +    + + I     L+ ++        +A     L       +  S R+  ++  R 
Sbjct: 249 EQIFAIPAQEVIGR--DLADVIVPDHHKAAHAAGMARLRNGGTRRVVGSGRV-RLEAKRA 305

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
                      ++ +  +         +       + ++     
Sbjct: 306 TGEVFPVELAIQSAETAQGEIFVAFLRDISAQVAAEEELVSARD 349


>gi|49477249|ref|YP_035694.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|118477033|ref|YP_894184.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam]
 gi|196036837|ref|ZP_03104226.1| sensor histidine kinase ResE [Bacillus cereus W]
 gi|196047621|ref|ZP_03114828.1| sensor histidine kinase ResE [Bacillus cereus 03BB108]
 gi|218902687|ref|YP_002450521.1| sensor histidine kinase ResE [Bacillus cereus AH820]
 gi|225863440|ref|YP_002748818.1| sensor histidine kinase ResE [Bacillus cereus 03BB102]
 gi|228914151|ref|ZP_04077769.1| hypothetical protein bthur0012_13850 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228926608|ref|ZP_04089677.1| hypothetical protein bthur0010_13240 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228932863|ref|ZP_04095730.1| hypothetical protein bthur0009_13350 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228945177|ref|ZP_04107533.1| hypothetical protein bthur0007_13400 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|229121119|ref|ZP_04250356.1| hypothetical protein bcere0016_14250 [Bacillus cereus 95/8201]
 gi|229183772|ref|ZP_04310989.1| hypothetical protein bcere0004_13400 [Bacillus cereus BGSC 6E1]
 gi|49328805|gb|AAT59451.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|118416258|gb|ABK84677.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam]
 gi|195990566|gb|EDX54545.1| sensor histidine kinase ResE [Bacillus cereus W]
 gi|196021535|gb|EDX60235.1| sensor histidine kinase ResE [Bacillus cereus 03BB108]
 gi|218536187|gb|ACK88585.1| sensor histidine kinase ResE [Bacillus cereus AH820]
 gi|225787288|gb|ACO27505.1| sensor histidine kinase ResE [Bacillus cereus 03BB102]
 gi|228599621|gb|EEK57224.1| hypothetical protein bcere0004_13400 [Bacillus cereus BGSC 6E1]
 gi|228662238|gb|EEL17841.1| hypothetical protein bcere0016_14250 [Bacillus cereus 95/8201]
 gi|228814412|gb|EEM60677.1| hypothetical protein bthur0007_13400 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228826784|gb|EEM72551.1| hypothetical protein bthur0009_13350 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228832984|gb|EEM78552.1| hypothetical protein bthur0010_13240 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228845484|gb|EEM90517.1| hypothetical protein bthur0012_13850 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 591

 Score =  301 bits (772), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 80/371 (21%), Positives = 154/371 (41%), Gaps = 39/371 (10%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            ++ E  QL SIL + +DG+  +N+EG ++  N           E+       + L +  
Sbjct: 249 ALQQEKEQLASILSSMADGVITLNQEGEVVVINPPAEHFLQVWQEEK-----EIELSKKL 303

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
           PS +      ++  + +Q +E        +   + L   +            + D++E +
Sbjct: 304 PSELVELFHLVVESEQQQVVEINLQ----KGNYVVLMTPLYNQTKIRGAVAVLRDMTEER 359

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + +                + DF+A VSHE+RTP+  + G+SE I +            E
Sbjct: 360 RLE--------------KMRQDFIANVSHELRTPMVMLQGYSEAILDDIVQT--KEEINE 403

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           +   I      +  +VN+LLD++++ESG + LH   V +   V +     Q  A +K + 
Sbjct: 404 FVQIIYDESVRLGKLVNELLDLARMESGNVELHIGEVDIHPFVEKIGRKFQGIAKDKEVA 463

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +   F + I +   D   ++Q+  N++ NAI  T +GG + +     +N  +I  V+D+G
Sbjct: 464 LTVDFKDPIEQYPFDADRMEQVLTNLIDNAIRHTNAGGHVTLVIDTKNNG-LIFEVQDSG 522

Query: 746 VGMTNYELEKAMKPFGQIPNSQQI-------RGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
            G+   ++      F +   ++          G        +AK +V  + GK  + S  
Sbjct: 523 AGIPEEDIPFLFDRFYKADKARTRGKKGGTGLGL------AIAKNIVQGHDGKIAVSSVV 576

Query: 799 AKGTLIEIIFP 809
            +GT   +  P
Sbjct: 577 GEGTTFSVYLP 587


>gi|269958992|ref|YP_003328781.1| sensor histidine kinase [Anaplasma centrale str. Israel]
 gi|269848823|gb|ACZ49467.1| sensor histidine kinase [Anaplasma centrale str. Israel]
          Length = 469

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 97/249 (38%), Positives = 152/249 (61%), Gaps = 1/249 (0%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           +S       +L   K+ AE+ES  KS FLA VSHE+RTPL +IIGFSE+I+++  GP+G+
Sbjct: 210 LSSQYDANLELQEQKETAERESVSKSQFLANVSHELRTPLNSIIGFSEIIQSESLGPIGS 269

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
             Y EY + I +SG  +L ++ND+LD SK E+ K+ + F    L + V  + ++V   A 
Sbjct: 270 EEYKEYISDIHQSGVHLLSLINDILDFSKAEANKLTVEFVKFDLSKIVDSSFTMVLPRAK 329

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
           + ++ ++         +LAD + +KQ+ +NILSN++ FTP GG + + T     E++++ 
Sbjct: 330 DAKVELKKEMPEEPVVMLADPKRMKQVIINILSNSVKFTPEGGLVKLCTEIR-GEQLVVE 388

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           + DTG+G+   +L K M  FGQ  +    + EGTGLGLPL+K +V+   G F I S P  
Sbjct: 389 ISDTGIGIAQQDLYKVMSVFGQADSKHSRKYEGTGLGLPLSKKLVELMHGTFSIKSEPNL 448

Query: 801 GTLIEIIFP 809
           GT++ + FP
Sbjct: 449 GTIVTLTFP 457


>gi|253580374|ref|ZP_04857640.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848467|gb|EES76431.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 985

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 99/360 (27%), Positives = 166/360 (46%), Gaps = 12/360 (3%)

Query: 460 ATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEI 516
              D   +++ +       +  V KL G  VE I +           +       YL EI
Sbjct: 346 NVDDVFLMLDAKTYQADYVSPNVEKLLGITVEQIRKDICVLGKLHPGDVEDPEKKYLEEI 405

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKK 576
              + ++   +     T E +      +  ++     Y L + D +  ++    LS A +
Sbjct: 406 QVHEQQEWDLEYVHQKTGEHRWFHNVAMGSEVNGKKKYILVLSDRTSDRKMNQALSEAVR 465

Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
            AE  +  KS FL+ +SH+IRTP+ AIIGF+ +  +         R  +Y   I  S N 
Sbjct: 466 AAETANKAKSTFLSNMSHDIRTPMNAIIGFTTLAVSNID---DKERVRDYLGKILSSSNH 522

Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF-ANNIP 695
           +L ++ND+LD+S+IESGK++L    VSL E + +  +++    + K++ +          
Sbjct: 523 LLSLINDILDMSRIESGKIHLEETEVSLSEVLHDLKTIISGQIHAKQLELYMDVMDVTNE 582

Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-----VILRVRDTGVGMTN 750
            +  D   + Q+ LN+LSNAI FTP+GG + +        +       +RV+D G+GM+ 
Sbjct: 583 DVYCDKTRLNQVLLNLLSNAIKFTPAGGTVSVRLREYPGTQRGCELYEIRVKDNGIGMSQ 642

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             ++K   PF +   S   R +GTGLG+ + K +VD   G   + +   KGT   I  PL
Sbjct: 643 KFVQKIFSPFERERTSTVSRTQGTGLGMAITKNIVDMMGGTIEVQTEQGKGTEFIIRLPL 702


>gi|62180844|ref|YP_217261.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|194444742|ref|YP_002041532.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|224583244|ref|YP_002637042.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|62128477|gb|AAX66180.1| sensory histidine kinase in two-component regulatory system with
           RcsB, regulates colanic capsule biosynthesis [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|194403405|gb|ACF63627.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|224467771|gb|ACN45601.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|322715320|gb|EFZ06891.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
          Length = 948

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 98/426 (23%), Positives = 172/426 (40%), Gaps = 35/426 (8%)

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
           +     L  I+      L +  I                 E        +  +   E  Q
Sbjct: 303 VPVDLVLERIR-----ILILNAILLNVLVGAGLFTLARMYERRIFIPAESDAQRLEEHEQ 357

Query: 454 L-CSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
               I+ +   GI I+   +G+ + +N            +  ++                
Sbjct: 358 FNRKIVASAPVGICILRTIDGVNILSNELAHTYLNMLTHEDRQR---------------- 401

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571
            LT+I+       ++      T     L +  +  +    +     + D+S   + +  L
Sbjct: 402 -LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSTRVKMEESL 456

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
               + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R       ++
Sbjct: 457 QEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVER---LVTAMN 512

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
            S +L+L I++D+LD SKIES ++ +     S  E ++   +        K++ +     
Sbjct: 513 NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFIE 572

Query: 692 NNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
            ++P  +  D   ++Q+  N+LSNAI FT  G  I++       + + +RVRDTGVG+  
Sbjct: 573 PDVPVSLNGDPMRLQQVISNLLSNAIKFTDIG-CIVLHVRC-DGDYLSIRVRDTGVGIPA 630

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+   +  PL
Sbjct: 631 KEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTLRIPL 690

Query: 811 YDTSHP 816
           Y   +P
Sbjct: 691 YGAQYP 696


>gi|167630809|ref|YP_001681308.1| signal transduction histidine kinase, putative [Heliobacterium
           modesticaldum Ice1]
 gi|167593549|gb|ABZ85297.1| signal transduction histidine kinase, putative [Heliobacterium
           modesticaldum Ice1]
          Length = 1200

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 74/266 (27%), Positives = 135/266 (50%), Gaps = 12/266 (4%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E K+ +++L+  +  A + S  KS+F+A +SHEIRTP+ AI+G +E++         + +
Sbjct: 625 ERKRVQDELARTRDQALEASRLKSEFVANMSHEIRTPMNAIMGMNELLLETDL----DAQ 680

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             ++A  +  S   +L I+ND+LD SK+E+GKM +      L + V     ++ + A ++
Sbjct: 681 QRDFAVIVRESAEGLLRIINDILDFSKLEAGKMTIDETEFRLVDTVETIADMLSVGARKR 740

Query: 683 RILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EV 737
            + + T     IP +   D   ++Q+ LN+  NA+ FT  GG  I+ T           +
Sbjct: 741 GLALSTFIDPAIPAVLRGDEGRLRQVLLNLGGNAVKFTEQGGVTILITPDDPPGVSLLRL 800

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
              V DTG+G++    ++  +PF Q   S   +  GTGLGL +++ +++   G+  + S 
Sbjct: 801 RFEVIDTGIGLSPVARQRLFQPFTQADGSTTRKYGGTGLGLSISRRIIELMGGEIGVESE 860

Query: 798 PAKGTLIEIIFP---LYDTSHPHDCI 820
             +G+      P   +   + P D I
Sbjct: 861 FGRGSTFWFTVPFTAVAKPAPPPDAI 886


>gi|168206570|ref|ZP_02632575.1| sensory box histidine kinase [Clostridium perfringens E str.
           JGS1987]
 gi|170661961|gb|EDT14644.1| sensory box histidine kinase [Clostridium perfringens E str.
           JGS1987]
          Length = 791

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 88/383 (22%), Positives = 170/383 (44%), Gaps = 22/383 (5%)

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
           +  +     + ++     L  I     D I  ++  G+I   N +V K   Y  E+I+  
Sbjct: 388 DITEEYTLTKNIKRNEQLLSCINNNVQDLIISVDNNGLITYVNDSVLKTLNYTYEEIIGM 447

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--- 552
           P    L +N        L ++   D   +++   +G       + +  II+ L  ++   
Sbjct: 448 PIINLLGKND-----EILNQLKLEDEEDSIKCKLVGKH---SFVYVESIIRTLNDNNEIP 499

Query: 553 -CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
               +   +++  K+ +N L+   K A+     +++F A +SHE+RTPL  I    +++ 
Sbjct: 500 YGKVIVAKNLTSKKRLEN-LAIKFKEAKAYEQIRNEFFANISHELRTPLNIIYSTIQLLN 558

Query: 612 NQRFGPLGN-----PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
           ++      +      +Y +       +   +L ++N+L+D+SKIE G +   F    +  
Sbjct: 559 SKHETDPMDFNNFYDKYKQGLKI---NCYRMLRLINNLIDVSKIEVGFLKADFTNRDIVF 615

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726
            V   +SLV  ++  K I I          I  D   ++++ LN+LSNAI FT + G+I 
Sbjct: 616 LVENIVSLVIPHSENKDINIIFDTNVEENIIKCDPVKIERLILNLLSNAIKFTQNHGEIF 675

Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
           +    + N+ V + ++D G+G+           F Q   S + R EG+G+GL + K++ +
Sbjct: 676 VDLNIS-NDWVKISIKDNGIGIPKEMQASIFDRFVQADKSLKRRNEGSGIGLSIVKSIAE 734

Query: 787 ANMGKFYIFSTPAKGTLIEIIFP 809
            + GK  + S   KG+   +  P
Sbjct: 735 LHDGKIELISDGIKGSEFIVWLP 757


>gi|169343152|ref|ZP_02864177.1| sensory box histidine kinase [Clostridium perfringens C str.
           JGS1495]
 gi|169298790|gb|EDS80865.1| sensory box histidine kinase [Clostridium perfringens C str.
           JGS1495]
          Length = 791

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 88/383 (22%), Positives = 170/383 (44%), Gaps = 22/383 (5%)

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
           +  +     + ++     L  I     D I  ++  G+I   N +V K   Y  E+I+  
Sbjct: 388 DITEEYTLTKNIKRNEQLLSCINNNVQDLIISVDNNGLITYVNDSVLKTLNYTYEEIIGM 447

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--- 552
           P    L +N        L ++   D   +++   +G       + +  II+ L  ++   
Sbjct: 448 PIINLLGKND-----EILNQLKLEDEEDSIKCKLVGKH---SFVYVESIIRTLNDNNEIP 499

Query: 553 -CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
               +   +++  K+ +N L+   K A+     +++F A +SHE+RTPL  I    +++ 
Sbjct: 500 YGKVIVAKNLTSKKRLEN-LAIKFKEAKAYEQIRNEFFANISHELRTPLNIIYSTIQLLN 558

Query: 612 NQRFGPLGN-----PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
           ++      +      +Y +       +   +L ++N+L+D+SKIE G +   F    +  
Sbjct: 559 SKHETDPMDFNNFYDKYKQGLKI---NCYRMLRLINNLIDVSKIEVGFLKADFTNRDIVF 615

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726
            V   +SLV  ++  K I I          I  D   ++++ LN+LSNAI FT + G+I 
Sbjct: 616 LVENIVSLVIPHSENKDINIIFDTNVEENIIKCDPVKIERLILNLLSNAIKFTQNHGEIF 675

Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
           +    + N+ V + ++D G+G+           F Q   S + R EG+G+GL + K++ +
Sbjct: 676 VDLNIS-NDWVKISIKDNGIGIPKEMQASIFDRFVQADKSLKRRNEGSGIGLSIVKSIAE 734

Query: 787 ANMGKFYIFSTPAKGTLIEIIFP 809
            + GK  + S   KG+   +  P
Sbjct: 735 LHDGKIELISDGIKGSEFIVWLP 757


>gi|304320655|ref|YP_003854298.1| sensory box histidine kinase, hypothetical [Parvularcula
           bermudensis HTCC2503]
 gi|303299557|gb|ADM09156.1| sensory box histidine kinase, hypothetical [Parvularcula
           bermudensis HTCC2503]
          Length = 935

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 117/743 (15%), Positives = 254/743 (34%), Gaps = 43/743 (5%)

Query: 103 PKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL-----KRQNTWYGKTTLWPIEGTNL 157
           P+ +G  A     +   D SD    +P + + + L     +         TL     T  
Sbjct: 138 PRILGGPAALATLLTYTDHSDERGDNPASGLLEALGDLPLEGDQNRSAAPTLREKVATLR 197

Query: 158 YVPIDLAALPIYSR------NREFSG-----FRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
              I  +   I         +   +G     +    +V +            R       
Sbjct: 198 THGIVFSGAVITDEGRPIECDGRVAGNQVTLWLTDPVVRLAEEAGVVGQARDRAADLHGA 257

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKN-----KVSSLTEYYAHKDDVLKTEKYPL 261
           L+++ +      +   ++  +     ++ M       +V             +       
Sbjct: 258 LNQLDRAPIVAWRRGSNLALEWVNQAYVEMVEAINFAEVIDNQIEIDPAFRPIAERAKEE 317

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE--YLSHRNHPSLSAYFDEGE 319
                    +      +   +   +     +  +   SF    +               +
Sbjct: 318 AERSGRRGTDGVVAVNVKGQRRLLRVIEVPMHGSVGASFGGMAIDITRQERAQLDLKRQQ 377

Query: 320 NLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
                T+D+      V+    +L Y+N +FL L     V  +        LLD  + +  
Sbjct: 378 RAHKMTLDQLSTAVAVFDAAQSLEYSNQAFLDLWGL-DVSILRTRPSHGELLDLLRHAGK 436

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK------ANQFPENMPQNG 432
              K              +      +   E +         +       +Q       + 
Sbjct: 437 LPAKEDFNAWKTNELRLYTEVQGEDRSANEGAAPDEIWDLPEGKTLRVRHQRHGLGGVSV 496

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
           +  +  +T   + + + ++    + L   + G+A+   +G +   NR+   L+ +  + +
Sbjct: 497 VFEDITETLRLQSRFQTQISVQRATLNTLAQGVAVFGVDGRLALHNRSFETLWSFSRDQL 556

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILS--LDLRQTLEKITLGSTKEEKLL---SLRIIIKK 547
             +P    L +            +      +     +  +    EE  L    + +    
Sbjct: 557 DDRPHWDSLSEPMAERGRDVDEGLARLKDRIVSLAHEDRVSRVGEELTLKDGRILLPATS 616

Query: 548 LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
                   +T  DI++ ++ +  L    +I E     K+ F+  +S+++R PL  IIGF+
Sbjct: 617 PLPDGATLVTFLDITDAREREKDLEIRNQILEDADRIKTRFVDHISYQLRNPLNTIIGFA 676

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
           E+++++  GPL N R  +YA  I  + N +LD+VND++D++ I++G++ L  + V + + 
Sbjct: 677 EMMESEMVGPL-NDRQKDYAATILTASNHLLDLVNDIIDLAAIDAGRLGLELQEVDVRDL 735

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727
           +  A     L A +  I ++     +I  + AD R +KQ+  N+L+N   FT +GGQ+++
Sbjct: 736 LESAAMFAALKAEDSEISLKVDCPKDIGTLKADERRLKQVLFNLLANGFSFTQAGGQVVL 795

Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
                  + + + V DTG G++  +       F                   L  + V+ 
Sbjct: 796 G-ARRDGDAIRIWVEDTGRGVSPQDQATVFDRFESAGPGAGAGLGLA-----LVNSFVEL 849

Query: 788 NMGKFYIFSTPAKGTLIEIIFPL 810
           + G   + S    GT++    P+
Sbjct: 850 HGGFVRLASQEGAGTVVTCHLPV 872


>gi|161613012|ref|YP_001586977.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Paratyphi B str. SPB7]
 gi|161362376|gb|ABX66144.1| hypothetical protein SPAB_00718 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 948

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 98/426 (23%), Positives = 172/426 (40%), Gaps = 35/426 (8%)

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
           +     L  I+      L +  I                 E        +  +   E  Q
Sbjct: 303 VPVDLVLERIR-----ILILNAILLNVLVGAGLFTLARMYERRIFIPAESDAQRLEEHEQ 357

Query: 454 L-CSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
               I+ +   GI I+   +G+ + +N            +  ++                
Sbjct: 358 FNRKIVASAPVGICILRTIDGVNILSNELAHTYLNMLTHEDRQR---------------- 401

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571
            LT+I+       ++      T     L +  +  +    +     + D+S   + +  L
Sbjct: 402 -LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSTRVKMEESL 456

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
               + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R       ++
Sbjct: 457 QEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVER---LVTAMN 512

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
            S +L+L I++D+LD SKIES ++ +     S  E ++   +        K++ +     
Sbjct: 513 NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFIE 572

Query: 692 NNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
            ++P  +  D   ++Q+  N+LSNAI FT  G  I++       + + +RVRDTGVG+  
Sbjct: 573 PDVPVSLNGDPMRLQQVISNLLSNAIKFTDIG-CIVLHVRC-DGDYLSIRVRDTGVGIPA 630

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+   +  PL
Sbjct: 631 KEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTLRIPL 690

Query: 811 YDTSHP 816
           Y   +P
Sbjct: 691 YGAQYP 696


>gi|188583962|ref|YP_001927407.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi
           BJ001]
 gi|179347460|gb|ACB82872.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi
           BJ001]
          Length = 1086

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 103/781 (13%), Positives = 213/781 (27%), Gaps = 81/781 (10%)

Query: 90  DAHGYLKEISEELP------KTIGNYA----FKMIGMRLCDVSDILHIDPNNHIGDLLKR 139
             H      +            +G        ++ G    ++ D ++    +H       
Sbjct: 185 GPHHVFAFANAAYRGLVAHRDILGKPVRAALPEVEGQGFFELLDEVYATGRSHTAH---- 240

Query: 140 QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199
                  T L    G      +D    P+   +   +G   F             A    
Sbjct: 241 GAP---VTLLRVPGGVPEQRFLDFVYQPMRDASGTITGV--FVDGSDVTERITGNAALAE 295

Query: 200 LDKKFSHLHEIKKGHSSVEKEKY--DIFSQQSPPPHLRMKNKVSSLTEYYA-HKDDVLKT 256
            + +F  + +       V          +++      + + +   L    A H DD   +
Sbjct: 296 SEARFRTMADDAPVMMWVTDADGACQYLNRRWYEFTGQTEAQALGLGWLEAVHPDDRGWS 355

Query: 257 EKYPLLT-SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE----SFEYLSHRNHPSL 311
            +  L   +       +      +                           +      + 
Sbjct: 356 GETFLTANARHEGFSLEYRLRRRDGAYRWAIDTASPRFAADGRFLGYIGSVVDIEERRAA 415

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
                E E      V+   I  + +       +  P    +       D+ +      L 
Sbjct: 416 ELALAESEERLRLAVESGEIGLWDFDPRAGTLFWPPRIKAMFGLAPEADVTLEDFSEGLH 475

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
                                T         T+         +        +     +  
Sbjct: 476 PDD---RARVTAAFAAALDPGTRAFYDEEFRTVGGADGTIRWVAAKGRGVFDAEGHCLRG 532

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490
            G   +    +  + ++     +L ++L+  +  I +++        NRA  +L GY +E
Sbjct: 533 VGSAIDITARKATEERLVEATRRLDAVLDNATQAIFMMDERQHCAYMNRAAERLTGYTLE 592

Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEI---LSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
           +   +     +    P    + L E     +       +   +   ++     +      
Sbjct: 593 ETRGQALHDVVHHTRPDGSPYPLHECPIDQAFPENNQEQGEEIFVHRDGSFYPVAFTASP 652

Query: 548 LPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAEKESSHKS----------------- 586
           +           +   +I    + K +L       E++ + ++                 
Sbjct: 653 IRDEGGAPIGTVIEARNIEAELRAKAQLEAFNASLEQQVAARTAELMRTEEALRQSQKME 712

Query: 587 ---DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
                   ++H+    LT I G  E +   R           Y N    +      + + 
Sbjct: 713 AVGQLTGGLAHDFNNLLTGITGSLE-LLQTRLAQGRLTEIDRYVNAAQGAAKRAAALTHR 771

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703
           LL  S+    +  L  +P  ++  V     L++       I +    A  +  +L D   
Sbjct: 772 LLAFSR----RQTLDPKPTDVNRLVMGMEELLRRTI-GPSITLEVVAAGGLWSVLVDPSQ 826

Query: 704 VKQIALNILSNAIHFTPSGGQIIISTT-------------HTSNEEVILRVRDTGVGMTN 750
           ++   LN+  NA    P GG+I I T                  + + L V DTG GM+ 
Sbjct: 827 LENALLNLCINARDAMPDGGRITIETANRWLDDRGARERDLDPGQYLSLCVTDTGTGMSP 886

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             + KA  PF          G+GTGLGL +    V  + G+  I+S   +GT + +  P 
Sbjct: 887 DVIAKAFDPFFTTKP----IGQGTGLGLSMIYGFVRQSGGQVRIYSEVGQGTTMCLYLPR 942

Query: 811 Y 811
           +
Sbjct: 943 H 943



 Score =  158 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 54/532 (10%), Positives = 135/532 (25%), Gaps = 33/532 (6%)

Query: 82  TVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN 141
            +   W      ++   ++      G    K +G    +V   +       +      + 
Sbjct: 51  PMLIVW---GEAHVTLYNDGYAPMCGARHPKALGRPFDEVWHDIWDQVEPILSRAYAGEA 107

Query: 142 TW-YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
           T     T      G            P+   +   +G   F                +  
Sbjct: 108 THMEDITFTMHRNGYPEETHFAFGYTPVRGEDGTVAGM--FCACSETTAAVRAGRQMQAE 165

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
            ++F+ L E      +V    + +F+  +      + ++        A   +V     + 
Sbjct: 166 RERFARLFEQAPSFVAVLDGPHHVFAFANAAYRGLVAHRDILGKPVRAALPEVEGQGFFE 225

Query: 261 LLT---------SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL----SHRN 307
           LL          +   +             Q      +  +++ S               
Sbjct: 226 LLDEVYATGRSHTAHGAPVTLLRVPGGVPEQRFLDFVYQPMRDASGTITGVFVDGSDVTE 285

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDIEIAGGL 366
             + +A   E E       D  P+  +V        Y N  +   T       +   G L
Sbjct: 286 RITGNAALAESEARFRTMADDAPVMMWVTDADGACQYLNRRWYEFTGQTEAQAL-GLGWL 344

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
             +    +                    +   RL   +               +      
Sbjct: 345 EAVHPDDRGWSGETFLTANARH---EGFSLEYRL---RRRDGAYRWAIDTASPRFAADGR 398

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
            +   G   +  + R  +  +     +L   +E+   G+   +     L     +  +FG
Sbjct: 399 FLGYIGSVVDIEERRAAELALAESEERLRLAVESGEIGLWDFDPRAGTLFWPPRIKAMFG 458

Query: 487 Y-PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK-EEKLLSLRII 544
             P  D+  + F+  L  +  + +       L    R   ++        +  +  +   
Sbjct: 459 LAPEADVTLEDFSEGLHPDDRARVTAAFAAALDPGTRAFYDEEFRTVGGADGTIRWVAAK 518

Query: 545 IKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
            + +  +  +      +  DI+  K  + +L  A +  +    + +  +  +
Sbjct: 519 GRGVFDAEGHCLRGVGSAIDITARKATEERLVEATRRLDAVLDNATQAIFMM 570



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/270 (11%), Positives = 66/270 (24%), Gaps = 19/270 (7%)

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAG 364
                    +          +     P  + +   ++   N  +  +   +    +    
Sbjct: 25  ATPLGPPETWPAALKTLVGVMLGSQQPMLIVWGEAHVTLYNDGYAPMCGARHPKALGRP- 83

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS-LAMTFIPFEKANQ 423
                 D       + ++P++                T+  N         F       +
Sbjct: 84  -----FDEVWHDIWDQVEPILSRAYAGEATHMEDITFTMHRNGYPEETHFAFGYTPVRGE 138

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVS 482
                       E        R+M+ E  +   + E     +A+++    +    N A  
Sbjct: 139 DGTVAGMFCACSETTAAVRAGRQMQAERERFARLFEQAPSFVAVLDGPHHVFAFANAAYR 198

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE------KITLGSTKEE 536
            L      DIL KP    L +         L E+ +     T            G   E+
Sbjct: 199 GL--VAHRDILGKPVRAALPEVEGQGFFELLDEVYATGRSHTAHGAPVTLLRVPGGVPEQ 256

Query: 537 KLLSLRIIIKKLPFS--SCYSLTMHDISEW 564
           + L       +      +   +   D++E 
Sbjct: 257 RFLDFVYQPMRDASGTITGVFVDGSDVTER 286


>gi|238793685|ref|ZP_04637307.1| Aerobic respiration control sensor protein arcB [Yersinia
           intermedia ATCC 29909]
 gi|238726926|gb|EEQ18458.1| Aerobic respiration control sensor protein arcB [Yersinia
           intermedia ATCC 29909]
          Length = 778

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 75/374 (20%), Positives = 162/374 (43%), Gaps = 16/374 (4%)

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
                + ++  +   L S L+A+ D +   N +      NRA+  L G   + ++     
Sbjct: 142 HREQAQVELGQQSALLRSFLDASPDLVYYRNEDNEFSGCNRAMELLTGKSEKQLVGLTPK 201

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII--KKLPFSSCYSL 556
                +    +     ++   ++  T E+  +     +    LR +    ++        
Sbjct: 202 DVYAPDIAEKVMETDEKVFRHNVSLTYEQWLVYPDGRKACFELRKVPFYDRVGKRHGLMG 261

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
              DI+E K+ ++ L +        S  K+ F++ +SHE+RTPL  I+G S ++ +    
Sbjct: 262 FGRDITERKRYQDALEN-------ASRDKTTFISTISHELRTPLNGIVGLSRILLDTEL- 313

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
              +   ++Y   I  S   + +I ND++++ K+E  K+ L  +P+     +++  +L  
Sbjct: 314 ---DSEQLKYLKTIHVSAITLGNIFNDIIEMDKLERRKVQLDNQPIDFTGFMADLENLSG 370

Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
           L    K +         +P  ++ D   ++QI  N++ NA+ F+  G +I++      ++
Sbjct: 371 LLVQPKGLKFIMEPQLPLPEKVITDGTRLRQILWNLIGNAVKFSQQG-KIVVRVRREGSD 429

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQI-PNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
            +I  V D+G+G+   E +K    + Q+   +      GTG+GL ++K +  +  G   +
Sbjct: 430 RLIFEVEDSGMGIPEDEQDKIFAMYYQVKDRNGGRPATGTGIGLAVSKRLAQSMGGDITV 489

Query: 795 FSTPAKGTLIEIIF 808
            ST  +G+   +  
Sbjct: 490 KSTQGEGSCFILTI 503



 Score = 41.9 bits (97), Expect = 0.49,   Method: Composition-based stats.
 Identities = 16/124 (12%), Positives = 35/124 (28%), Gaps = 5/124 (4%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN-TWYGKTTLWPIE 153
               +  +    G    +++G+   DV      +      + + R N +   +  L   +
Sbjct: 177 FSGCNRAMELLTGKSEKQLVGLTPKDVYAPDIAEKVMETDEKVFRHNVSLTYEQWLVYPD 236

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
           G       +L  +P Y R  +  G  GFG           +   +   +  +        
Sbjct: 237 GRKACF--ELRKVPFYDRVGKRHGLMGFG--RDITERKRYQDALENASRDKTTFISTISH 292

Query: 214 HSSV 217
               
Sbjct: 293 ELRT 296



 Score = 40.8 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/224 (9%), Positives = 55/224 (24%), Gaps = 10/224 (4%)

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
           V  L E       +++  +       E +    E+   +N     +++          + 
Sbjct: 77  VEQLEESRQRLSRLVEKLEVMRYRDLELNKQLTENIAQLNQEIVEREKAEKAHLQVVDKL 136

Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVD 358
            E + H           +   L    +D  P   +  +        N +  LLT      
Sbjct: 137 KEEMGH--REQAQVELGQQSALLRSFLDASPDLVYYRNEDNEFSGCNRAMELLTGKSEKQ 194

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
            +        L      + + A K +           +      + +             
Sbjct: 195 LVG-------LTPKDVYAPDIAEKVMETDEKVFRHNVSLTYEQWLVYPDGRKACFELRKV 247

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
              ++  +     G   +  + +  +  +E       + +   S
Sbjct: 248 PFYDRVGKRHGLMGFGRDITERKRYQDALENASRDKTTFISTIS 291


>gi|313499882|gb|ADR61248.1| Histidine kinase [Pseudomonas putida BIRD-1]
          Length = 935

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 104/614 (16%), Positives = 207/614 (33%), Gaps = 31/614 (5%)

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
               ++ G    ++    +  +       R  N +   T   A    +   +    L S 
Sbjct: 100 EEVHLQLGSQPGKRWSLWLTQRMCAYLEARRVNLLYVDTAAQAPMRWLYNADAQASLPSP 159

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
                 +         +       G   +         +            + + ++P  
Sbjct: 160 ALLEQLRASELRATAPRELWLADQGAQGSRLFIFLRLDARDPGSGWLGLEIDSQAVSPSL 219

Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
            D     F +++   +      F           +    G +    A +      +    
Sbjct: 220 EDASAGKFMMFNADGMLV----FTNTPGPTLDRSLRHPVGNNFFGFAGQGFLPEYLVISK 275

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
              S    +  +  L  I       L    +    +      + Q   +     T    R
Sbjct: 276 PLMSSDWQLVYAIDLSAILAGLWQQLLGALLFCVLSITLIRVLIQRFDQRLFTPTVERIR 335

Query: 446 KMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            +    +    ++E     + ++ R +G ++  N    +  G                  
Sbjct: 336 ALVESEIFSRDVIETAPVALCVLRRSDGQVVLENHLAQQWLGQD--------------PA 381

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564
             +    ++ +       Q  +      + E + L L     +            DIS  
Sbjct: 382 RGARSAQWIEQAFERHEGQCSDY---FESAEGRHLYLSCSPTRYKGEPVLLCAFSDISAR 438

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           KQ +  L  A++ A+  +  K+ FLA +SHEIRTPL  ++G  E++         + +  
Sbjct: 439 KQIEAALEDARRAADTANEAKTQFLATMSHEIRTPLYGVLGTLELLSRTVL----DAQQR 494

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           +Y   I+ S + +L ++ D+LD+SKIE+G++ L     S  + V E +      A  K +
Sbjct: 495 DYLRAIEGSSSTLLQLICDVLDVSKIEAGQLALELSEFSAPDLVREVVQGYSAAARSKGL 554

Query: 685 LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILR 740
            + +     +P  ++ D+  ++QI  N+LSNA+ FT  G  ++ +     + E   ++ +
Sbjct: 555 QLYSCLDPRLPEHLIGDVNRIRQILNNLLSNAVKFTDCGRVVLRARLLNRDGERSCLLWQ 614

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V DTG G+   +      PF Q          GTGLGLP+ + +     G+  + S    
Sbjct: 615 VSDTGKGIAEQDQPFIFDPFYQTEG-HSQVIPGTGLGLPICQRLTQLMNGQLRLVSELGL 673

Query: 801 GTLIEIIFPLYDTS 814
           G+   +  PL   S
Sbjct: 674 GSSFSLTLPLEVAS 687


>gi|171056738|ref|YP_001789087.1| histidine kinase [Leptothrix cholodnii SP-6]
 gi|170774183|gb|ACB32322.1| histidine kinase [Leptothrix cholodnii SP-6]
          Length = 508

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 113/514 (21%), Positives = 187/514 (36%), Gaps = 23/514 (4%)

Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG--NLFYANPSFLLLTKYKS-VD 358
            L                 L+   +    +   + S G   L   N     L + +  V 
Sbjct: 5   LLPGLPRAVARLPLSIRSKLSGVLLAIVGLLIAIGSVGLYELGEVNARTEDLVRLQRKVA 64

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
                   +        +   A     L  + R        L  +Q+   +   +     
Sbjct: 65  AFRQIQQDTMGQLHNVANVMLAPDERTLETTLRQLSQFGYDLDRLQFVSTDEAELYARVR 124

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
              + F   +               +       + L   LE  ++              N
Sbjct: 125 HDYDAFIGEVGAVIALVRSGRLAEAREAQARRAVPLAERLERMTN-----------ELVN 173

Query: 479 RAVSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
           RA + +            +   + L     SV+   L             +       E 
Sbjct: 174 RAEADMLAQVDAGAAGYARSRALVLSIAAGSVVLALLLGYALSWSLVEPVREMDARLAEI 233

Query: 537 KLLSLRIII-KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
                   I                  +  +   +L    +  E  + +KS FLA +SHE
Sbjct: 234 AAGQFERRIDIPNRDELGALAA-----DLNRMSAELGRLVREVEAANRNKSAFLANMSHE 288

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           +RTPL AIIGFSEV+  Q FG + N + +EY   I  SG+ +L ++ND+LD+SKIE+G+M
Sbjct: 289 LRTPLNAIIGFSEVLIEQMFGEV-NAKQLEYLRDIHASGHHLLTLINDVLDLSKIEAGRM 347

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715
            L      L E +  +++LV+  A    + +     + +   +AD R +KQ+ +N+LSNA
Sbjct: 348 ELQPSRFHLPELLDNSLTLVRERAANHGLRLTLDVQDGLGDWVADPRKIKQVVVNLLSNA 407

Query: 716 IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           + FTP+GG + +           + V DTGVG+   E  +  + F Q       + EGTG
Sbjct: 408 VKFTPAGGHVTLRARRIDAGTAEIAVIDTGVGIAPEEQAQVFEEFRQAGTDPLRKSEGTG 467

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           LGL LA+  V+ + G   + S P +G+      P
Sbjct: 468 LGLALARRFVELHGGTLRVDSAPGRGSTFAFTLP 501


>gi|149174997|ref|ZP_01853621.1| ammonium/methylammonium permease [Planctomyces maris DSM 8797]
 gi|148846334|gb|EDL60673.1| ammonium/methylammonium permease [Planctomyces maris DSM 8797]
          Length = 883

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 86/264 (32%), Positives = 151/264 (57%), Gaps = 16/264 (6%)

Query: 558 MHDISE-----WKQEKNKLSHAKKI---AEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
           + D +E      ++ + K    K+    AE  S  KS+FLA +SHEIRTP+TA++G++++
Sbjct: 451 LKDRTENLELTRRELEEKAERLKQANTDAEAASRAKSEFLANMSHEIRTPMTAVLGYTDL 510

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           +  + +G  G+   I+  + I R+G+ +L+++ND+LD+SKIESG + +     SL E + 
Sbjct: 511 LIEESWGRPGS---IQLLDVIKRNGHYLLELINDILDLSKIESGNLTIETIQFSLLEKMK 567

Query: 670 EAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
           E  SL+++ A  + +  + SF   +P  I +D   +KQI +N++ NAI F+P GG++ + 
Sbjct: 568 EIQSLMKVRAELRGLHFKLSFEGTLPVEIQSDPTRLKQILINLIGNAIKFSPDGGKVSVE 627

Query: 729 TTH----TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
           T+       N  +  ++ DTG+GMT  ++    +PF Q  +S   +  GTGLGL ++K +
Sbjct: 628 TSFLNSSADNPLLEFKISDTGIGMTAEQIAMLYQPFVQADSSTTRKFGGTGLGLAISKRL 687

Query: 785 VDANMGKFYIFSTPAKGTLIEIIF 808
            +   G     S P +GT+  +  
Sbjct: 688 AEMLGGDLTCESVPGEGTVFTLTI 711


>gi|14600272|gb|AAK71320.1|AF393849_2 sensor protein CovS [Streptococcus mutans]
          Length = 450

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 83/377 (22%), Positives = 158/377 (41%), Gaps = 35/377 (9%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           R+    +  E  +L SIL   +DG+   +R G I   N    K      E  L       
Sbjct: 83  RLTHENLAQEKNRLTSILSYMTDGVLATDRRGKITVINDMAQKQLNVTREQALECNILDI 142

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS----L 556
           L+ ++            +  + +T E +     + ++ ++LRI        S +      
Sbjct: 143 LDDDSY---------TYNDLITKTPEIVLTRRDEYDEFITLRIRFALNRRKSGFISGLFA 193

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            +HD +E ++E+ +                 F++ VSHE+RTPLT++  + E +     G
Sbjct: 194 VLHDATEQEKEERERRL--------------FVSNVSHELRTPLTSVKSYLEAL---DDG 236

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV- 675
            L       +        N ++ ++ DLL +S+I++   +L  E  +    ++  +    
Sbjct: 237 ALTESVAPSFIKVSLDETNRMMRMITDLLSLSRIDNQTSHLDVELTNFTAFMNYILDRFD 296

Query: 676 ---QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
                 +  K   I   + +    I  D   + Q+  NIL+NAI ++P GG++ ++   T
Sbjct: 297 QIQSQQSTNKVYEIIRDYPDKSVWIEIDTDKMTQVIDNILNNAIKYSPDGGKVTVTMQTT 356

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
              ++IL + D G+G+   +L      F ++  ++     GTGLGL +AK +V  + G  
Sbjct: 357 DT-QLILSISDQGLGIPKKDLPLIFDRFYRVDKARSRAQGGTGLGLAIAKEIVKQHKGFI 415

Query: 793 YIFSTPAKGTLIEIIFP 809
           +  S   +G+   I+ P
Sbjct: 416 WANSEEGEGSTFTIVLP 432


>gi|46200809|ref|ZP_00056331.2| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 549

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 125/541 (23%), Positives = 217/541 (40%), Gaps = 42/541 (7%)

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTK 353
              +++   L H +H           ++    +    I         L       L    
Sbjct: 26  EELRDADNELRHTSHLLAEVAASTFLSIDKVLMGTAEIAARQDDPSRLLQFLRRQLAQAP 85

Query: 354 YKSVDDIEIAGGLSTL---LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
                 +    G+S L   L  P  + + + +P  L+  +               N ++ 
Sbjct: 86  TARALLVIGPDGMSRLATNLPDPHRAIDLSDRPYFLHHRNGGPSTLYVSGVIQSRNDDHW 145

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT----SDGIA 466
           + +     E  +     +    I                 + QL SIL+A     SD   
Sbjct: 146 IMVLSRRIETPDGAFAGVVAATI----------------NLEQLASILDAAAPDSSDSAL 189

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTV-----------FLEQNTPSVMNHYLTE 515
           +++ +G IL+ +        Y  + +  +P               L         +   +
Sbjct: 190 LVSPDGTILARSP---DHVRYVGKSLAGQPAFETARTAPEGSGEILSPLDGRKRLYAFHK 246

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTM--HDISEWKQEKNKL 571
             S  +            +E +L S+ ++   L                +    +  ++L
Sbjct: 247 ASSHPVIAVASHDQEAQLREWRLHSMTLVASALLVGLIIGALALFLARQLERMDRTLSEL 306

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
           + +++ A+  +  KS FLA +SHE+RTPL AIIGFS+ +     G     R  +Y  ++ 
Sbjct: 307 ARSRREADAANRAKSAFLANMSHELRTPLNAIIGFSDALLVGIPGHTCQSRCQDYLGHVQ 366

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
            S   +L ++ND+LD+SKIE+G   +   P  L   ++E + +V+  A  K I +  +  
Sbjct: 367 TSSRHLLSLINDILDLSKIEAGSTEIALAPTPLALLITECLEIVRAKAESKNISVALAGP 426

Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751
           +    +  D R ++QI LN+LSNA+ FTP GG+II+      + ++ L V DTG+GMT  
Sbjct: 427 DQDLMVTTDSRRLRQIVLNLLSNAVKFTPEGGRIILEAEC-DSGQLALTVNDTGIGMTQE 485

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
           E+  A+ PFGQ  +    R  GTGLGLPL+K + +   G   + S P +GT + I  PL 
Sbjct: 486 EIAVALTPFGQNDSDLARREAGTGLGLPLSKRLTELLGGTLSVTSIPGRGTTVTISLPLS 545

Query: 812 D 812
            
Sbjct: 546 R 546


>gi|224535375|ref|ZP_03675914.1| hypothetical protein BACCELL_00237 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224523016|gb|EEF92121.1| hypothetical protein BACCELL_00237 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 497

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 104/509 (20%), Positives = 192/509 (37%), Gaps = 25/509 (4%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
           P +         +  +  D  P+    +     ++  N       +  +  DI       
Sbjct: 3   PDIPQEVRIVNAIAEQLFDVWPVSIVMIDLEDRIWRVNKQMSDELQLDT--DIIGKSVFD 60

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
            L       +        L    +  I  S+     +    +   +         +    
Sbjct: 61  LLEVVQDKQNVLPRYLQELREGCQRIIPLSSNCFIYEQK-RHISFLIQGALIGVYEEERL 119

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
           +         ++ R  KR + I + +   I +         + E  ++  +    +  G 
Sbjct: 120 VRIVLYYRNVLEERTQKRLLNIALSR-TQIFQ------WSYDLERNLMIIDPRYFEYLGI 172

Query: 488 PVED--ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI-- 543
           P  D  +  + F   +  +    +   L  +                  +          
Sbjct: 173 PTRDYTLTPEEFAYLIHPDDRQSVFDAL-TLQLDGNLYEAPVEYRLRRDDGSWEWFEAQS 231

Query: 544 -IIKKLPFSSCYSLTMHDISEW-KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
             + +L  +    + +   ++  K  ++ L+ A + A      KS FLA +SHEIRTPL 
Sbjct: 232 TYVGQLKEAPYRIVGICMSTQKYKDTEDCLNEALRKARHSDELKSIFLANMSHEIRTPLN 291

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           AI+GFS ++ +     L     IE+ + I+++  L++ +++D+LD+SKIES  M  +F  
Sbjct: 292 AIVGFSSLLAHGDLD-LTKDDIIEFTSLIEKNSQLLMVLISDILDLSKIESNTMEFNFCN 350

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           +SL + ++E I   Q    +K + +          I  D   + Q+  N+++NAI FT  
Sbjct: 351 ISLHQVLNE-IGSAQRMNMKKGVELLLDLPGQEITISTDPTRLSQVINNLVNNAIKFTSE 409

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           G  I I     ++  V + V DTG GM    +E     F +    +    +GTGLGL + 
Sbjct: 410 G-NICIGYRPATSNRVKIFVEDTGTGMAKEVIEHIFDRFYKGDAFK----QGTGLGLAIC 464

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           + + +   GK  + STP KGT   II PL
Sbjct: 465 RTIAERFKGKIEVASTPGKGTRFTIILPL 493


>gi|328467898|gb|EGF38938.1| two-component sensor histidine kinase [Listeria monocytogenes 1816]
 gi|332310706|gb|EGJ23801.1| hypothetical protein LMOSA_11920 [Listeria monocytogenes str. Scott
           A]
          Length = 594

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 81/398 (20%), Positives = 168/398 (42%), Gaps = 29/398 (7%)

Query: 424 FPENMPQNGIEPEDVDTRINKRKM--EIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
             + + +       +  R+ + +   E E  +L S+L   +DG+   +R G ++  N   
Sbjct: 220 GVDEIGELADSFNTLTKRVQEAQAMTEGERRKLSSVLAYMTDGVIATDRRGKVILINTPA 279

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT-EILSLDLRQTLEKITLGSTKEEKLLS 540
            K+     E    +     L+          +  +      R TL+K  +          
Sbjct: 280 EKMLRVKHESANGRSIIDVLDIGDTYQFEDLMEVDGSLTMDRSTLDKPYVLRAN------ 333

Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
             +I ++  F++     +HDI++ ++   +              + DF++ VSHE+RTPL
Sbjct: 334 FSVIQRETGFNNGVIAVLHDITDQEKVDQE--------------RRDFVSNVSHELRTPL 379

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
           T++  + E + +  +          +          ++ +VNDLL +S+++ G+  L   
Sbjct: 380 TSMHSYLEALSDGAW--EDKEIAPRFLEVTQNETERMIRLVNDLLKLSRMDGGREQLEKS 437

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720
            V+  +  +  I   +    ++ I+ +         I  D   V Q+  NI+SNA  ++P
Sbjct: 438 FVNFTDFFNHIIDRFE-MMKKETIMFKRHIPREPVIIEIDEDKVMQVLDNIISNANKYSP 496

Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
            GG+I        + E+ + + D G+G+ + +L      F ++  ++     GTGLGL +
Sbjct: 497 DGGRISFYLKKFED-EIEVSIADEGLGVPDEDLANVFDRFFRVDKARSREMGGTGLGLAI 555

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
           A+ +++A+ G+ +      KGT+I+   P   +  P D
Sbjct: 556 AREVIEAHGGRIWAERNKTKGTIIKFTLP--YSDLPED 591


>gi|320104436|ref|YP_004180027.1| multi-sensor hybrid histidine kinase [Isosphaera pallida ATCC
           43644]
 gi|319751718|gb|ADV63478.1| multi-sensor hybrid histidine kinase [Isosphaera pallida ATCC
           43644]
          Length = 1011

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 111/712 (15%), Positives = 238/712 (33%), Gaps = 85/712 (11%)

Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKY--DIFSQQSPP 231
              G          R             + F  L ++ +  + + ++     + +  +  
Sbjct: 107 ALVGASIIDQHRRTRFRLILSERDWDEQRHFKRLIDLCQARAVIGRDGTYLKVNAAYAAL 166

Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291
                +  V +      H +D     +     +       +      N      +    +
Sbjct: 167 LDKTPEQLVGTAAAESIHPEDRHIIAEARDQLARTGQAVIEFRALDKNGQPTYHRALIIS 226

Query: 292 LQNNSKESFEYLSHRNHPSLSAYFD----EGENLTPETVDKCPIPFFVYSHG-------- 339
           L +      E+   R+  +            E +     +  P    + S          
Sbjct: 227 LHDWEDGEEEFFCIRSDITELRDAQSNLKRREAMLRVLEENIPGGALIQSEQIEGPSGLE 286

Query: 340 -NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398
            +  Y    F  +  Y     I  +     L +     D+       + RS +       
Sbjct: 287 LHFKYIGTGFQRVLGYDPQILINNSA---HLFNNLIHPDDQEQMWRAIQRSAQAWEPLD- 342

Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458
              T++               +  +  + + ++G+  +  +     +       +    +
Sbjct: 343 --ETVRVRAAWGQWRWIQVRSRPRREGDRVLRDGLILDVTEQIEANQARLETEQRFRQFM 400

Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
           +    G  I +     +  NR  ++L+G    E ++ +  +        +       ++ 
Sbjct: 401 DQVPMGAWITDDHERFVFVNRYTARLYGVEDPESLVGRRTSDIAPLEIAAEWKVVSDQVR 460

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-----YSLTMHDISEWKQEKNKLS 572
                + ++++  G   +  +    ++   L  +             D++E K+ +  L 
Sbjct: 461 REG--RVIQQVGRGRQPDGTIFKGLVLKFPLTDAQGRTDNLVGGVGIDLTELKRTQAILE 518

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
            ++  +E+    +SD LA++SHEIRTPLTAI+G  + +           R  +      R
Sbjct: 519 RSRWASEQAMRARSDHLAQLSHEIRTPLTAILGNVDRLVESDIPRDEAERARQTL---IR 575

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
           SG  +  ++ ++LD +KIE+G +++H+   +    V++ + L    A EK I +      
Sbjct: 576 SGRHLSHLLANVLDFAKIEAGGLDIHWSDANPHAIVADVVMLTSHAAMEKGIRLAHLVEE 635

Query: 693 NIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT------------------- 732
            +P  I  D   V+QI  N+++NAI +TP GG++ +   H                    
Sbjct: 636 TVPETIRTDPLRVQQIVTNLVTNAIKYTPPGGEVTLRVIHRVAVSDPDTTESEHLGHPPE 695

Query: 733 -------------------------------SNEEVILRVRDTGVGMTNYELEKAMKPFG 761
                                              V+++VRDTGVG+   +L +  +PF 
Sbjct: 696 TETVFASFSTSIPSSRWETTTSEDSGAEPTVERGWVVVQVRDTGVGIAADQLPRVFEPFS 755

Query: 762 QIPNSQQIRGE--GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
           Q+   +       G GLGL +A+ +     G   + S P +G+L E+  P+ 
Sbjct: 756 QVAAERGSGTAPVGYGLGLHIARTLAHQLDGFIQVRSAPGRGSLFELWLPVS 807



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 40/382 (10%), Positives = 86/382 (22%), Gaps = 29/382 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           I   G   +++      +     +++G    +              D L R      +  
Sbjct: 150 IGRDGTYLKVNAAYAALLDKTPEQLVGTAAAESIHPEDRHIIAEARDQLARTGQAVIEFR 209

Query: 149 LWPIEG-TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                G    +  + ++         EF     F I        D ++  KR +     L
Sbjct: 210 ALDKNGQPTYHRALIISLHDWEDGEEEF-----FCIRSDITELRDAQSNLKRREAMLRVL 264

Query: 208 HEIKKGHSSVEKEKYDIFSQQS---------------PPPHLRMKNKVSSLTEYYAHKDD 252
            E   G + ++ E+ +  S                    P + + N            D 
Sbjct: 265 EENIPGGALIQSEQIEGPSGLELHFKYIGTGFQRVLGYDPQILINNSAHLFNNLIHPDDQ 324

Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYT--KKQYFGTLQNNSKESFEYLSHRNHPS 310
                           L E                +       +        L       
Sbjct: 325 EQMWRAIQRSAQAWEPLDETVRVRAAWGQWRWIQVRSRPRREGDRVLRDGLILDVTEQIE 384

Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
            +    E E    + +D+ P+  ++        + N     L   +  + +         
Sbjct: 385 ANQARLETEQRFRQFMDQVPMGAWITDDHERFVFVNRYTARLYGVEDPESLVGRRTSD-- 442

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
             AP              R +   I    R    Q +      +         Q   +  
Sbjct: 443 -IAPLEIAAEWKVVSDQVRREGRVIQQVGRGR--QPDGTIFKGLVLKFPLTDAQGRTDNL 499

Query: 430 QNGIEPEDVDTRINKRKMEIEV 451
             G+  +  + +  +  +E   
Sbjct: 500 VGGVGIDLTELKRTQAILERSR 521



 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/275 (13%), Positives = 71/275 (25%), Gaps = 15/275 (5%)

Query: 64  NTNYLDSENTFVFDPIPRTVRF-TWNIDAHGYLKEISEELPKTIG-NYAFKMIGMRLCDV 121
             N    E    F      V    W  D H     ++    +  G      ++G R  D+
Sbjct: 384 EANQARLETEQRFRQFMDQVPMGAWITDDHERFVFVNRYTARLYGVEDPESLVGRRTSDI 443

Query: 122 SDILHIDPNNHIGDLLKRQNTWYGKTTL-WPIEGTNLYVPIDLAALPIYSRNREFSGFRG 180
           + +        + D ++R+     +       +GT     +     P+           G
Sbjct: 444 APLEIAAEWKVVSDQVRREGRVIQQVGRGRQPDGTIFKGLVL--KFPLTDAQGRTDNLVG 501

Query: 181 FGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV 240
            G+          +A+ +R           +  H +    +          P   +   V
Sbjct: 502 -GVGIDLTELKRTQAILERSRWASEQAMRARSDHLAQLSHEIR-------TPLTAILGNV 553

Query: 241 SSLTEYYAHKDDVLKTEKYPLLTSEESS--LPEQEDFHTINLNQYTKKQYFGTLQNNSKE 298
             L E    +D+  +  +  + +    S  L    DF  I                   +
Sbjct: 554 DRLVESDIPRDEAERARQTLIRSGRHLSHLLANVLDFAKIEAGGLDIHWSDANPHAIVAD 613

Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF 333
                SH             E   PET+   P+  
Sbjct: 614 VVMLTSHAAMEKGIRLAHLVEETVPETIRTDPLRV 648


>gi|300313029|ref|YP_003777121.1| two component hybrid sensor histidine kinase/response regulator
            protein [Herbaspirillum seropedicae SmR1]
 gi|300075814|gb|ADJ65213.1| two component hybrid sensor histidine kinase/response regulator
            protein [Herbaspirillum seropedicae SmR1]
          Length = 1524

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 116/785 (14%), Positives = 251/785 (31%), Gaps = 106/785 (13%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
             DA G +   +      + +            ++  L   P+    D     +       
Sbjct: 378  TDALGRISSWNRGAADYLPSSPA-------QALNTPLAQHPDLRELDARAASDA------ 424

Query: 149  LWPIEGTNLYVPIDLAALPIY----------SRNREFSGFRGFGIVHVNRVDNDPRALGK 198
                 G      + L   P+            R     G + F ++     + +     +
Sbjct: 425  ----SGQTTPHIVSLHGAPVRYASAQVFALHDRAGRAVG-KAF-MLRDITHEKNIERQLQ 478

Query: 199  R----LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254
            R    L+       +      ++ +   ++           + N  ++     A + +  
Sbjct: 479  RINEELEWTVQQRTQALHQAKTMLQTVLNVMPSLVAYWDRHLINHFANAAYERAFQREAG 538

Query: 255  KTEKYPLLTSEESSLPEQEDFH--------------TINLNQYTKKQYFGTLQNNSKESF 300
            +     +      +L E+   H              +++      +    T      +  
Sbjct: 539  QLNGVYMPDLVGPALFEKALPHIKGVLAGAQQTFERSVDDPVLGARHMLTTYIPEIGDLG 598

Query: 301  EYLS-------HRNHPSLSAYFDEGENLTPETVDKCPIP----------------FFVYS 337
            E                      E        +D+                        +
Sbjct: 599  EVTGFYVVAHDVTEITHNRNQLSETLAQNQSLLDQVQDANTLLNNVLSSAKGVAIIATDT 658

Query: 338  HGNLFYANPSFLLLTKYKSVDDIEIAGGLS-TLLDAPKLSDNNAIKPVMLYRSDRTCIAA 396
             G +   N     +  Y++ D +        +      L   ++   ++  R D   +  
Sbjct: 659  EGLVTLFNSGAEQMLGYRAEDVVGKLKEEHFSSRPEAALPGQDSHTELLYRRHDGATLPV 718

Query: 397  SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
             AR  T  ++                     +    I  +    R     +     QL  
Sbjct: 719  -ARQQTSMFDHRQRH----------------LGYLYIALDVSLQRQQASALAAARDQLVL 761

Query: 457  ILEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRKPFTVFLEQNTPSVMNHYLTE 515
              E    G+ + +++  +L  N  V++++G+       R        +        Y+ +
Sbjct: 762  AAEVAKLGVWVWDKDSDVLEYNPQVAEIYGFGDRGGAPRVSTYADWRRRVHPDDVDYVEK 821

Query: 516  ILSLDLRQTLEKITLGS--TKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKN 569
             L   L    +   +      +  +  ++         +           DI++  + +N
Sbjct: 822  TLRAGLAVDGDHEPVFRVVRDDGGIRYVQARAYVQRDGAGRPVRVICINLDITQRIEFEN 881

Query: 570  KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
             L  A+  AE+ +S KS FLA VSHEIRTP+  ++G  ++++  +  P       +Y + 
Sbjct: 882  NLVDARLKAEQANSAKSLFLASVSHEIRTPMNGVLGMIQLLQRTQPLPA----QQDYLDK 937

Query: 630  IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
             + S   +L+++NDLLD SK+++ ++ L  +   L+       +++     +  + +  +
Sbjct: 938  AEISAKSLLNLLNDLLDFSKMDAKQLQLDLQAFELERFGHNLAAVLAGSPPQAGVSLHIA 997

Query: 690  FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS-----NEEVILRVRD 743
                +PR ++ D   ++Q+ +N+  NA+ FT  G  I +  T           + + V D
Sbjct: 998  LDPQLPRRLVGDAHRLQQVLVNLTGNALKFTHQG-HIDVHFTRLDPLPGRTVALRVEVSD 1056

Query: 744  TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
            TG+G+    L+     F Q   S   R  GTGLGL ++K +V    G+  + S P +G+ 
Sbjct: 1057 TGIGIAADRLDDIFDAFTQAEASTTRRYGGTGLGLAISKHLVGLMGGQLQVSSEPGRGSR 1116

Query: 804  IEIIF 808
                 
Sbjct: 1117 FWFDL 1121



 Score = 73.9 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 61/494 (12%), Positives = 130/494 (26%), Gaps = 43/494 (8%)

Query: 116 MRLCDVSDILHIDPNNHIGDLLKRQNT-WYGKT-TLWPIEGTNLYVPIDLAALPIYSRNR 173
             L D   +      + I  LL+R      G+   +  I    L     L  +       
Sbjct: 53  RELHDSLAVDSRWIGDDIESLLRRYEHGLRGERGAILAIGEHALTRERLLRYMDSRDLAT 112

Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH 233
           EF    GFG +    +    RA  ++  ++   L       +    E Y I   +    +
Sbjct: 113 EFPWAGGFGFIRHVPLS--ARAAYEQQVRQGRMLFPSITQLAENPGELYVIEYIEPIEAN 170

Query: 234 LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293
            +      + ++      D         LT     + +        L          T  
Sbjct: 171 RKALGLDIASSQARRSAADHAMLTGRAELTPPIHLVQKDGASANAYLFLLPIYAGSVTPP 230

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTK 353
              +   + +     P       +  +          +   +        A+   + L +
Sbjct: 231 TLHERQEKIIGWAYAP---LSVHDIISELSRRWKTHALEVLIKDA----AADGDNVELFR 283

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
               D +    GL + L             +           ++    T Q+  + ++ +
Sbjct: 284 SDGFDALAQDSGLDSALS------------LYGRTWKLQLRPSTDYRQTHQFVSDRAMLL 331

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
           +               Q             + K++     L ++++++ D I   +  G 
Sbjct: 332 SCGSLLVLALVIALAYQTYS--------RREEKLQQAQALLAAVVDSSPDAIVTTDALGR 383

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
           I S NR  +          L  P            +        S    QT   I     
Sbjct: 384 ISSWNRGAADYLPSSPAQALNTPLAQ------HPDLRELDARAASDASGQTTPHIVSLHG 437

Query: 534 KEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
              +  S ++             +  + DI+  K  + +L    +  E     ++  L  
Sbjct: 438 APVRYASAQVFALHDRAGRAVGKAFMLRDITHEKNIERQLQRINEELEWTVQQRTQAL-- 495

Query: 592 VSHEIRTPLTAIIG 605
             H+ +T L  ++ 
Sbjct: 496 --HQAKTMLQTVLN 507


>gi|316935933|ref|YP_004110915.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           DX-1]
 gi|315603647|gb|ADU46182.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           DX-1]
          Length = 873

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 95/548 (17%), Positives = 189/548 (34%), Gaps = 48/548 (8%)

Query: 277 TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV------DKCP 330
                          +   +     +L  R+ P L A       +T   +         P
Sbjct: 80  GSEARPQLLAWMAMIVFVAASAVRAWLRTRSEPRLEASARAIRRMTLHALLLGLIWGAMP 139

Query: 331 IPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388
           +  FV +     L  A  +  +++            GL+            A   + L  
Sbjct: 140 VMVFVTAEPGDQLIAACVAAGMISGGAFTLSTVPRAGLAYTWA------LTAGSALSLAL 193

Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
            + T    +A           +  + +  F   N                +       + 
Sbjct: 194 CEGTAYRITA-----------AFLLLYGVFMSRNLVSHGEMFFDNLRAKFELERQTEIIS 242

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
           + +    +     SD +   + +G ++       ++   P   +     +  +       
Sbjct: 243 LLLKDFQA---NASDWLWQTDAQGRLVHVPERFVEVAKLPPNLLTGALLSDVIGMLCSED 299

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEW 564
               +     +  R+ +    +            +  K +  +    + Y     D++E 
Sbjct: 300 GRCAMGVAAKMAQREAMNDFVVHVVIGGAPRLWSLTAKPVFDAKGEFAGYRGVGRDVTER 359

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
            + +         AE E+  KS FLA +SHEIRTP+  ++G +  +   +     +    
Sbjct: 360 WRAEQ--------AEAENRAKSSFLAMMSHEIRTPMNGVLGLANSLLETKL----DAEQQ 407

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           +    I  SG+ +L I+ND+LD+SK+E+G++       S    V    ++++     K I
Sbjct: 408 QAVTTIRDSGDDLLRILNDILDLSKLEAGRLEFEQADFSPATLVESVRAIIEPEIRGKGI 467

Query: 685 LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILR 740
            ++      +P  +  D   ++Q+ LN+ SNA+ FT  G   I+ T    N+    V  +
Sbjct: 468 ELKIDIDPRLPPSLSGDAARIRQVLLNLASNAVKFTERGSIAIVLTCVKRNDSHATVEWQ 527

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V DTG+G++   +      F Q   S   R  GTGLGL +++ +V+   G   + S   +
Sbjct: 528 VTDTGIGISPDRVGSLFTDFAQADVSINRRFGGTGLGLAISRRIVEQMGGDIAVTSREGE 587

Query: 801 GTLIEIIF 808
           G+      
Sbjct: 588 GSTFRFSL 595



 Score = 65.4 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 44/376 (11%), Positives = 96/376 (25%), Gaps = 14/376 (3%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD---ILHIDPNNHIGDLLKRQNT 142
            W  DA G L  + E   +        + G  L DV              +   + ++  
Sbjct: 256 LWQTDAQGRLVHVPERFVEVAKLPPNLLTGALLSDVIGMLCSEDGRCAMGVAAKMAQREA 315

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
                    + G    +   L A P++    EF+G+RG G                    
Sbjct: 316 MNDFVVHV-VIGGAPRLW-SLTAKPVFDAKGEFAGYRGVG--RDVTERWRAEQAEAENRA 371

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
           K S L  +               +       L  + + +  T   +  D +        L
Sbjct: 372 KSSFLA-MMSHEIRTPMNGVLGLANSLLETKLDAEQQQAVTTIRDSGDDLLRILNDILDL 430

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
           +  E+   E E            +     ++   +     L     P L           
Sbjct: 431 SKLEAGRLEFEQADFSPATL--VESVRAIIEPEIRGKGIELKIDIDPRLPPSLSGDAARI 488

Query: 323 PE-TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVD--DIEIAGGLSTLLDAPKLSDNN 379
            +  ++           G++            + +V+    +   G+S        +D  
Sbjct: 489 RQVLLNLASNAVKFTERGSIAIVLTCVKRNDSHATVEWQVTDTGIGISPDRVGSLFTDFA 548

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI-EPEDV 438
                +  R   T +  +     ++    +    +        +F  ++P +     +  
Sbjct: 549 QADVSINRRFGGTGLGLAISRRIVEQMGGDIAVTSREGEGSTFRFSLDLPWSNAWVADHR 608

Query: 439 DTRINKRKMEIEVMQL 454
             R+    +   +  L
Sbjct: 609 LDRLGSDDLRTRIALL 624


>gi|182412210|ref|YP_001817276.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
 gi|177839424|gb|ACB73676.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
          Length = 1342

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 99/766 (12%), Positives = 212/766 (27%), Gaps = 52/766 (6%)

Query: 86   TWNIDAHGYLKEISEELPKTIGNYAFKMIG--MRLCDVSDILHIDPNNHIGDLLKRQNTW 143
             W  DA+       +      G    +  G                      L+     +
Sbjct: 457  VWEWDANTQKHTWDDRTHTIHGLKPGEFDGSFEGWMKCLHPDDRRLAEARFQLVLAGGNF 516

Query: 144  YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL-DK 202
            Y +          +   ++  A+            R  G      V+ +     + L D+
Sbjct: 517  YDQEFRLVPSSDGVIRHVESRAVVQRDAQGRL--LRITGTSRDITVERENEERLRALNDR 574

Query: 203  KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA-----HKDDVLKTE 257
                L   + G   +                  +  +    T           D      
Sbjct: 575  LQLALRASRYGVWDLNPATGRFIWDDRLFQIYGVTRETFPCTSEAWLNLLHPDDRSRMEH 634

Query: 258  KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
                       +  +             + +    ++        +      +      E
Sbjct: 635  TIHAPRPGHDEIDNEFRIIVQGGFLRHIETHGYVRRDEHGRPVRIVGMDRDITAEKQTLE 694

Query: 318  GENLTPE----TVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
               +  E     V+      + ++    + Y +  +  +  Y+  +  +     ++L+  
Sbjct: 695  ALRMAEERWQLAVEGTNDGVWDWNVATGVTYHDQRWFQMLGYEPGEVADTIEAWNSLVHP 754

Query: 373  PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
              L  N +       R                 + E    M        +   + +   G
Sbjct: 755  DDLPANLSATEDHFARRSPL---YHHEYRIRTKSGEWKWIMDRGKVVSRDGHGQPLRMVG 811

Query: 433  IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED- 491
            +  +    +  ++++         + E T  G   ++ + + L+ +  V +L     +  
Sbjct: 812  MHTDVTARKSLEQRLHQFEQLATQVSELTQIGGWELDLDTMQLTWSEQVRRLHEVDEDYR 871

Query: 492  ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
                    F        ++  L   ++    ++ +      T + + + +R + +     
Sbjct: 872  PTVHTSIEFYAPEVRDTLSSALKAAMTQG--RSYDLELPLVTAKGRRIWVRALTRAEFRD 929

Query: 552  S---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSH--KSDFLARVSHEIRTPLTAIIGF 606
            +        + DIS  +  +      +    +             ++H+    LT I+G+
Sbjct: 930  NKPVRLIGALQDISSRRDSEEARRKLEFQLFQAQKMETLGTLAGGIAHDFNNLLTGIMGY 989

Query: 607  SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
             + + +   G   N    +Y      +     ++V  +L   +  S        P+ L  
Sbjct: 990  -QELVSDVLGE--NSEARDYLAQARGASVRARELVEQILTFGRQSSDD---QHTPLDLAL 1043

Query: 667  AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP-SGGQI 725
             V EA  L++       I I T        +  D   + Q+ LN+ SNA H     GG +
Sbjct: 1044 VVEEARRLLRATIPA-TIAIETHIEPECGFVQGDATQLHQVLLNLGSNAAHAMQLKGGVL 1102

Query: 726  IISTTHTS--------------NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
             I                     E V L V D G GM    L++   PF      +    
Sbjct: 1103 AIGLRRADRTTSRSATLATLPPGEYVELSVTDNGHGMDEGTLQRIFDPFFTTKEVR---- 1158

Query: 772  EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
            EGTGLGL +   +V A+ G   + S    G+   I  P+  T   +
Sbjct: 1159 EGTGLGLAVVHGIVRAHRGAIDVESRTGIGSTFHIYLPVAATEAEN 1204



 Score =  135 bits (340), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 39/521 (7%), Positives = 123/521 (23%), Gaps = 39/521 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTWYGK 146
            D  G L+  +    +  G    ++ G +          DP     I   L+     Y +
Sbjct: 333 TDGEGNLEWANTAFERMTGYTLAEVKGRKPGQFLQGPDTDPAVVAQIRRALETGERCYAE 392

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
              +       +  +D+   P+   + +        I              + L+++   
Sbjct: 393 VLNYTKSRHPYWQIVDM--EPVRDASGKLI--NWIAIQTDVTAHRLAEQHLRTLNERLQL 448

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPP-------PHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
             +                +            P     +    +   +     + +    
Sbjct: 449 ATQSAALGVWEWDANTQKHTWDDRTHTIHGLKPGEFDGSFEGWMKCLHPDDRRLAEARFQ 508

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
            +L        E     + +      +      ++               ++    +E  
Sbjct: 509 LVLAGGNFYDQEFRLVPSSDGVIRHVESRAVVQRDAQGRLLRITGTSRDITVERENEE-- 566

Query: 320 NLTPETVDKCPIPFFVYS---------HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
                  D+  +                G     +     +         E     S   
Sbjct: 567 -RLRALNDRLQLALRASRYGVWDLNPATGRFI-WDDRLFQIYGVTR----ETFPCTSEAW 620

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
                 D+ +     ++               I         +    + + ++    +  
Sbjct: 621 LNLLHPDDRSRMEHTIHAPRPGHDEIDNEFRII-VQGGFLRHIETHGYVRRDEHGRPVRI 679

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490
            G++ +    +     + +   +    +E T+DG+   N    +   ++   ++ GY   
Sbjct: 680 VGMDRDITAEKQTLEALRMAEERWQLAVEGTNDGVWDWNVATGVTYHDQRWFQMLGYEPG 739

Query: 491 DILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII---I 545
           ++    + +   +  +          +  +              TK  +   +      +
Sbjct: 740 EVADTIEAWNSLVHPDDLPANLSATEDHFARRSP-LYHHEYRIRTKSGEWKWIMDRGKVV 798

Query: 546 KKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
            +              D++  K  + +L   +++A + S  
Sbjct: 799 SRDGHGQPLRMVGMHTDVTARKSLEQRLHQFEQLATQVSEL 839



 Score = 94.3 bits (233), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 27/354 (7%), Positives = 84/354 (23%), Gaps = 16/354 (4%)

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
           +  ++        ++       + S  ++    E                       +E 
Sbjct: 235 IEPISAPIFLLSGLIIAGLIHAMASAGAASTLDERRKAAESEHARLNAVLEQQAARLQEL 294

Query: 300 FEYLSHRNHPSL--SAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKS 356
               +                                +    GNL +AN +F  +T Y  
Sbjct: 295 VARRTSELRTLSVNLRTTTRENAQLGLVARNTTNGVVITDGEGNLEWANTAFERMTGYTL 354

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
            +      G          +D   +  +           A    +T   +          
Sbjct: 355 AEVKGRKPGQ---FLQGPDTDPAVVAQIRRALETGERCYAEVLNYTKSRH---PYWQIVD 408

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476
                +   + +    I+ +    R+ ++ +     +L    ++ + G+   +      +
Sbjct: 409 MEPVRDASGKLINWIAIQTDVTAHRLAEQHLRTLNERLQLATQSAALGVWEWDANTQKHT 468

Query: 477 TNRAVSKLFGYPVEDILRKP--FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
            +     + G    +       +   L  +   +       +L+       E   +  + 
Sbjct: 469 WDDRTHTIHGLKPGEFDGSFEGWMKCLHPDDRRLAEARFQLVLAGGNFYDQEFRLV-PSS 527

Query: 535 EEKLLSLRIIIKKLPFSSCYSLTM----HDISEWKQEKNKLSHAKKIAEKESSH 584
           +  +  +         +    L +     DI+  ++ + +L       +     
Sbjct: 528 DGVIRHVESRAVVQRDAQGRLLRITGTSRDITVERENEERLRALNDRLQLALRA 581


>gi|226228272|ref|YP_002762378.1| putative two-component hybrid sensor and regulator [Gemmatimonas
           aurantiaca T-27]
 gi|226091463|dbj|BAH39908.1| putative two-component hybrid sensor and regulator [Gemmatimonas
           aurantiaca T-27]
          Length = 1028

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 120/636 (18%), Positives = 220/636 (34%), Gaps = 29/636 (4%)

Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255
                    + L +++     V    +           L     V      +   +D  +
Sbjct: 142 WTLYRRHVDARLSQVQTTTFRVPGSPHHRVRIAVHASLLVFGALVGGALWGHLKAEDARR 201

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
            E   L T         E          ++    G L N      E     +   +    
Sbjct: 202 AEG-ELSTLVSRQRLHAERMMRFASAADSEPAEIGQLTNELASLLE-----DARRVDVLA 255

Query: 316 DEGENLTPETVDKCPIPFFVYSHGN--LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
           D   + T  T                 L  +  +F LLT        E A    T+    
Sbjct: 256 DRLSHGTTATARSAWSVLARNRADRDSLRVSVEAFTLLTFPA-----ERARVADTIQQRA 310

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ--N 431
                +    + L +  +                     +  I           + +   
Sbjct: 311 DALRAHTEVVLDLLQRHQAESVQQGIRAAWVMAAFLFAMLLGIALVVIEPAVRLLRRQHV 370

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
            +    V+     +  +    QL         G    +     L  +  + +LFG     
Sbjct: 371 AVTTRSVEFERLAQVAQRTAQQLADAQSMARLGSWSFDSATRHLQWSAELFQLFGRDSTQ 430

Query: 492 ILRKP---FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
               P          +   V+   L          +L   T       + +     +++ 
Sbjct: 431 WTPTPELVVDDQYHPDEVPVLLAALQHTQETGEPYSLLMRTAERNPAVRWVRAEGRVQRR 490

Query: 549 PFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
              +      T+ D+++  + +  L  A++ AE  +  KS+FLA +SHEIRTPLTAI+G 
Sbjct: 491 ADGTRVGLMGTVMDVTDAIEREEALRQAQQYAEGANRSKSEFLANMSHEIRTPLTAILGH 550

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
           +++++ +          ++    I R+G  +L ++ND+LDIS+IE+G++ +      L  
Sbjct: 551 TDLLREEAVRSAAPRDQVQGLETIQRAGEHLLTVLNDILDISRIEAGRLEIEPVACDLPA 610

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQI 725
            + +  SL++  A  K + + T   N +P R+ AD   V+QI +N++ NA+ FT + G++
Sbjct: 611 LLLDVESLMRARAAAKGLTLETRLRNTVPSRVFADPTRVRQILMNLVGNAVKFT-AYGRV 669

Query: 726 IISTTHTS---NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
            I          E + + V DTG GMT  +     +PF Q   S   R  GTGLGL + +
Sbjct: 670 TIEAGVERAEGQEWLTITVDDTGPGMTEQQESLLFQPFMQADGSVTRRHGGTGLGLAICR 729

Query: 783 AMVDANMGKFY-IFSTPAKGTLIEIIF---PLYDTS 814
            +     G    + + P +G+  E+     P+   +
Sbjct: 730 RLATLMGGHVRLVHTAPGRGSRFELRLVLQPIASAA 765


>gi|225159367|ref|ZP_03725663.1| Histidine kinase [Opitutaceae bacterium TAV2]
 gi|224802028|gb|EEG20304.1| Histidine kinase [Opitutaceae bacterium TAV2]
          Length = 678

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 83/279 (29%), Positives = 142/279 (50%), Gaps = 10/279 (3%)

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
            I        Y  ++ DI+E K+++ +L+ A+  A   S  KS FLA +SHEIRTP+  I
Sbjct: 8   RISPRGAFCGYVGSVVDITERKRQEQELATARDQAVHASRLKSQFLANMSHEIRTPMNGI 67

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           IG S ++ + R  P       E+A  + +S   +L ++ND+LD SKIESG++N+      
Sbjct: 68  IGMSGLLLDTRLSP----EQREFAEIVQKSAEALLAVINDILDFSKIESGRLNIDEVEFD 123

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSG 722
           L   V + ++L+   A +K I +   F + +P  +  D   ++QI  N++ NAI FT  G
Sbjct: 124 LRTVVEDTLALLGERAIDKEIELTCEFPSGLPTALRGDPGRIRQIITNLVGNAIKFTERG 183

Query: 723 GQ-IIISTTHTSNEEV--ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
              + ++    +N  +   + VRDTG+G+ +       +PF Q   S   +  GTGLGL 
Sbjct: 184 EVSVTVTRIQETNTTLHFRISVRDTGIGVADDIKPHLFQPFVQADGSATRKFGGTGLGLA 243

Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEI--IFPLYDTSHP 816
           +++ +++   G+    + P +G+        P    + P
Sbjct: 244 ISRQLIEMMGGRIGFTTKPGRGSTFWFDLCLPKLLEATP 282


>gi|218780204|ref|YP_002431522.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfatibacillum alkenivorans AK-01]
 gi|218761588|gb|ACL04054.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfatibacillum alkenivorans AK-01]
          Length = 917

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 104/650 (16%), Positives = 231/650 (35%), Gaps = 23/650 (3%)

Query: 175 FSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK-GHSSVEKEKYDIFSQQSPPPH 233
             G     + +  R ++   A  +        +  IK   + +     +  +   +  P 
Sbjct: 278 IMGVPRQALNNCARGESRRGAFERHARFTVEIISNIKDLAYLAYAAGSHHEWYNGTGYPF 337

Query: 234 LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293
                 +  +    A+ D         +                   +++  +     L 
Sbjct: 338 GSRAEGIPLIGRMLAYADAYDWLTSCSVEGPPLEHQEAMAKIRRETGSRFDPRIAPTALM 397

Query: 294 --NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLL 351
             ++       L          +  +  ++   T DK  +       G +      ++ +
Sbjct: 398 VLDSCGAGALPLPKEAMEFQRLFMTDQADVASLTPDKRAVTLTPEGRGAMLGQAEEWVRV 457

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR-ENS 410
              + ++ +E   G+  LL       + A + + +   D       A L   +       
Sbjct: 458 VLSEKLEILEGREGVKKLL------GSGASRIMQMMEGDAGTQKFLAMLEKSEKKVISTD 511

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470
           LA       +A   P     + +  +        +++    +   S L +  + I   + 
Sbjct: 512 LAARNGVHMEAIFLPRARGWDALLRKKSGGGHPVKRL---SVLYQSFLNSL-EAIVFTDG 567

Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530
           +G I   N+A+  L+GY +E++L +   +       + + + +   L      +      
Sbjct: 568 KGFITDANKAMLDLYGYSMEELLGQTPAMLGSP-GQNEVYNEIRRKLEKQAGGSWSGELS 626

Query: 531 GSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
              +    ++  + +  L  S+     +   M DI+E +  +  L       E+ +  KS
Sbjct: 627 HRAQNGDEVTALVTVNSLSDSTGNAVGHIWHMADITERRNLEKALESQNIKLERLNQLKS 686

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
           D +A  SH++++PL  I G++  +  +  G        +Y + I  S N ++  +  +LD
Sbjct: 687 DLMAVTSHDLKSPLNVIAGYA-GLIKETAGFASPETIAKYLDNIIFSVNRMVKFIGQILD 745

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706
             KIESGK+++  EP+ L+E + E +  +          I         ++ AD   + Q
Sbjct: 746 AQKIESGKLDVEMEPLFLNELLQEHVENMATALQNGDKRIIFQDKGGRRKVNADPERMIQ 805

Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
           +  N+LSNA+ F+P GG + +       + V + + D G G+   ++EK    + Q+   
Sbjct: 806 VFDNLLSNALKFSPDGGAVEVHYKDDGGDRVEIFISDEGPGIPESDMEKIFDRYFQVKKQ 865

Query: 767 QQIRGE---GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
                E   G+GLGL +++ ++  + G   + +    G    +  P    
Sbjct: 866 GTHSTERTYGSGLGLYISREILRMHGGSISVRNQAEGGCQFILSLPALQA 915


>gi|42524257|ref|NP_969637.1| sensor histidine kinase/response regulator [Bdellovibrio
           bacteriovorus HD100]
 gi|39576465|emb|CAE80630.1| sensor histidine kinase/response regulator [Bdellovibrio
           bacteriovorus HD100]
          Length = 878

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 84/324 (25%), Positives = 147/324 (45%), Gaps = 19/324 (5%)

Query: 494 RKPFTVFLEQNTPSVMNHYLTEIL-----SLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            + F      ++   +   L E+      SL             T    L+ + +I   L
Sbjct: 405 GRDFHADFRWSSHLEIGDRLWEVTIQQDTSLRQGSAFNTAVFLLT---SLVFVFLICTLL 461

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
              +   +T+ +I + K     L       +K S  KS+FLA +SHEIRTPL  I+G S+
Sbjct: 462 LTIANRIITVEEIVDEKT--QHLIDLNVQLKKASETKSEFLANMSHEIRTPLNVIVGMSD 519

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
           +++        N     Y +   ++G+ +L I+ND+LDISKIE+G + L    V L   V
Sbjct: 520 LLEESPL----NEDQKHYVDISKKAGHNLLSIINDILDISKIEAGLLTLEKTEVDLHSLV 575

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIII 727
           ++   + +L A EK + +    + +   I + D   ++Q+  N++SN++ FT  G  I +
Sbjct: 576 NDITEMFELKAREKNLELSVYLSEDTHSIFMGDPTRIRQVLSNLISNSLKFTTDGS-IRV 634

Query: 728 ST---THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
                       +I  V DTG+G+   ++ +  +PF Q  ++   +  GTGLGL ++K +
Sbjct: 635 EVMKNQTEMEGNLIFHVSDTGIGIPRDKIPQLFQPFTQADSTITRKFGGTGLGLSISKRL 694

Query: 785 VDANMGKFYIFSTPAKGTLIEIIF 808
           V    G   + S   +G+      
Sbjct: 695 VKMMNGDITVESELHRGSRFSFSL 718


>gi|229189658|ref|ZP_04316673.1| hypothetical protein bcere0002_13360 [Bacillus cereus ATCC 10876]
 gi|228593922|gb|EEK51726.1| hypothetical protein bcere0002_13360 [Bacillus cereus ATCC 10876]
          Length = 591

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 81/371 (21%), Positives = 153/371 (41%), Gaps = 39/371 (10%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            ++ E  QL SIL + +DG+  +N+EG ++  N           E+       + L +  
Sbjct: 249 ALQQEKEQLASILSSMADGVITLNQEGEVVVINPPAEHFLQVWQEEK-----EIELRKKL 303

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
           PS +      ++  + +Q +E        +   + L   +            + D++E +
Sbjct: 304 PSELVELFHLVVESEQQQVVEINLQ----KGNYVVLMTPLYNQTKIRGAVAVLRDMTEER 359

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + +                + DF+A VSHE+RTP+  + G+SE I +            E
Sbjct: 360 RLE--------------KMRQDFIANVSHELRTPMVMLQGYSEAILDDIVQT--KEEIDE 403

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           +   I      +  +VN+LLD++++ESG + LH   V +   V +     Q  A +K + 
Sbjct: 404 FVQIIYDESVRLGKLVNELLDLARMESGHVELHIGEVDIHPFVEKIGRKFQGIAKDKEVE 463

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +   F N I     D   ++Q+  N++ NAI  T +GG + +     +N  +I  V+D+G
Sbjct: 464 LTVDFRNQIEEYAFDADRMEQVLTNLIDNAIRHTNAGGHVTLVIDTKNNG-LIFEVQDSG 522

Query: 746 VGMTNYELEKAMKPFGQIPNSQQI-------RGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
            G+   ++      F +   ++          G        +AK +V  + GK  + S  
Sbjct: 523 AGIPEEDIPFLFDRFYKADKARTRGKKGGTGLGL------AIAKNIVQGHDGKISVSSVV 576

Query: 799 AKGTLIEIIFP 809
            +GT   +  P
Sbjct: 577 GEGTTFSVYLP 587


>gi|167896670|ref|ZP_02484072.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 7894]
          Length = 927

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 127/677 (18%), Positives = 232/677 (34%), Gaps = 59/677 (8%)

Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH 233
           +F   +G+ ++H  +      A+G     +          + ++ + +  +   QSP P 
Sbjct: 24  QFDAHQGYAVLHTPQGAPAALAVGIPAPGRS---ASAFAPYLALLETQLLMGDGQSPLPD 80

Query: 234 LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293
            R++    S    Y       + +         S+                 +     + 
Sbjct: 81  DRVEGYSFSPDGTYLSLLWSREDQAPEAFIESHSASGL---IGDAMRGIRYLRDASTIVP 137

Query: 294 NNSKESFEYLSHRNHP--------SLSAYFDEGENLTPETVDKCPIPFF----------- 334
             +     +L     P         +    D    L    V   P+  F           
Sbjct: 138 LRADRRTVWLPPHPDPLTGKPMIRIVQPAIDATGKLFAIYVRSLPLDMFYSNLNDAPAGS 197

Query: 335 ----VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390
               V   GN+   + +        +   + I       L           +  M   SD
Sbjct: 198 TLTIVDRKGNVILGSSNQHGGDGGATASALGI-----RSLGDGFGGLVERYQDGMFVTSD 252

Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR------INK 444
           +        +H   W    + A+              +    +     D +         
Sbjct: 253 QLPGTDWVLVHAYSWK-TIAAALALRFSLVTGLVAGIIVMLWLFAIQFDRKGLIPNYRRA 311

Query: 445 RKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
           +++    +   +IL     G+ +++  +G +L  N A+ +L     ++ L          
Sbjct: 312 QRLLESEVLNRTILRTAPVGLGLLSAQDGSVLLQNNAMLELSARTSDEPLPIRLWEAYRH 371

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                 +               +            L   ++  +   ++    T+ DIS 
Sbjct: 372 AVGRSSDE-------DGALLQHDLAIEREGANPVYLQANVVAARYRGANVLLCTLLDISL 424

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            K+ + KL  A+  A++ +  KS FLA +SHEIRTPL AIIG  E+++        + + 
Sbjct: 425 RKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPL----SEQQ 480

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            E  + ++   N +L I+ND+LD+SK+ESG+M L   P  +   + E +      A  K 
Sbjct: 481 SERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAYAPLAESKG 540

Query: 684 ILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIST----THTSNEEVI 738
           + + +S    + R    D   ++QI  N++ NAI FT  G  I I             + 
Sbjct: 541 LALLSSIGEGVARHYAGDPTRIRQILSNLIGNAIKFTERG-HISIDVHRAKAARDGSAIE 599

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           + V DTG+G+    +      + Q   S   R  G+GLGLPL + +V    G   I S P
Sbjct: 600 IWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLP 659

Query: 799 AKGTLIEIIFPLYDTSH 815
             GT + +  PL +  H
Sbjct: 660 DFGTTVTVALPLREARH 676


>gi|42780676|ref|NP_977923.1| sensor histidine kinase ResE [Bacillus cereus ATCC 10987]
 gi|42736596|gb|AAS40531.1| sensor histidine kinase ResE [Bacillus cereus ATCC 10987]
          Length = 591

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 81/371 (21%), Positives = 154/371 (41%), Gaps = 39/371 (10%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            ++ E  QL SIL + +DG+  +N+EG ++  N           E+       + L +  
Sbjct: 249 ALQQEKEQLASILSSMADGVITLNQEGEVVVINPPAEHFLQVWQEEK-----EIELSKKL 303

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
           PS +      ++  + +Q +E        +   + L   +            + D++E +
Sbjct: 304 PSELVELFHLVVESEQQQVVEINLQ----KGNYVVLMTPLYNQTKIRGAVAVLRDMTEER 359

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + +                + DF+A VSHE+RTP+  + G+SE I +            E
Sbjct: 360 RLE--------------KMRQDFIANVSHELRTPMVMLQGYSEAILDDIVQT--KEEINE 403

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           +   I      +  +VN+LLD++++ESG + LH   V +   V +     Q  A +K + 
Sbjct: 404 FVQIIYDESVRLGKLVNELLDLARMESGNVELHIGEVDIHPFVEKIGRKFQGIAKDKEVA 463

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +   F N I +   D   ++Q+  N++ NAI  T +GG + +     +N  +I  V+D+G
Sbjct: 464 LTVDFKNPIEQYPFDADRMEQVLTNLIDNAIRHTNAGGHVTLVIDTKNNG-LIFEVQDSG 522

Query: 746 VGMTNYELEKAMKPFGQIPNSQQI-------RGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
            G+   ++      F +   ++          G        +AK +V  + GK  + S  
Sbjct: 523 AGIPEEDIPFLFDRFYKADKARTRGKKGGTGLGL------AIAKNIVQGHDGKIAVSSVV 576

Query: 799 AKGTLIEIIFP 809
            +GT   +  P
Sbjct: 577 GEGTTFSVYLP 587


>gi|283852658|ref|ZP_06369924.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283571949|gb|EFC19943.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 1101

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 121/733 (16%), Positives = 243/733 (33%), Gaps = 99/733 (13%)

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH--- 208
               +L   +  A  P   R +  +GF         R   +  AL +  D++ +      
Sbjct: 112 RAAPSLRRLLGYAGKP---RQQSLAGFTQAVFPQAARKVAEIVALLEASDERRTLALSFC 168

Query: 209 ----EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
               E+++G  ++E    +    +     L   ++   L      +  +++         
Sbjct: 169 RRDGEVRQGTLALEPFGGEPDKGRLVLGVLTDVSEPYRLERLVRGEGALVERRVRERTAR 228

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
            E ++   E     N      ++    +      S  +       +     ++       
Sbjct: 229 LERAM---ERLRRENAALAAGREV-RAVAALEGRSLGHEGFVQDATARDGAEQYLRRYAR 284

Query: 325 TVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
            +         V   G   + N ++       ++     A     + +    +       
Sbjct: 285 IIAASTDMVALVDGEGRYLFVNDTYA-----TALAQPRSAIVGRRIAEFIGEAPYRREVA 339

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
             L       +    R   +       L + + P+ + +             +  +TR+ 
Sbjct: 340 PRLAECLGGRLVQFERWVDLPGLGRRYLGIRYAPWTEEDG---RQSVVASLRDMTETRLA 396

Query: 444 KRKMEI----------------EVMQLCSILEATSDG-----------IAIINREG-IIL 475
             ++                      + S+                  I +++++G  + 
Sbjct: 397 VEELRESEKTTSILYRISSAVSSEEDMASLYRTIHSILGETIDTREFFIGLVDKDGDRLD 456

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK- 534
                 +     P+E ++       L   T    N +      +++ +T   + +     
Sbjct: 457 FV--LFASATQPPLEPVVG--LKSRLTPLTKDNFNDFKETSALIEVMRTAHPLLVTRRGM 512

Query: 535 ---------EEKLLSLRIIIKKLPFSSCYSLTMH----------DIS------------- 562
                    +   + L + I+           MH          D               
Sbjct: 513 RLTGLACPGQTPEVWLGVPIRVRQEVLGIMAVMHFSDPGRYGRKDAELLLSVAEQLALGV 572

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E ++  + L  AK+ A++ +  KS FLA +SHEIRTP+ AI+G +EV             
Sbjct: 573 ERRRNLDALRAAKEDADRANQAKSQFLAGMSHEIRTPMNAILGLTEVALRTEL----TEE 628

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             +Y + +  S   +L+I+ND+LD SKIE+ +M L      L E +  AI  + L A EK
Sbjct: 629 QRDYLDTVSDSARHLLNILNDILDFSKIEARQMELEAVDFDLHELLRSAIKTLGLGAREK 688

Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN-----EE 736
            + +       +PR +  D   V+Q+ +N++ NA+ FT +G  + +     +        
Sbjct: 689 GLRLALDIFPGLPRHVCGDPGKVRQVLVNLIGNAVKFTAAGS-VTVRAGLAAGAVGEPGR 747

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           ++  V DTG+G+    LE     F Q  NS   +  GTGLGL +++ +     G+    S
Sbjct: 748 LVFEVADTGIGIRPDMLEVIFDSFRQADNSTARQYGGTGLGLAISRELAGLMGGEIRAAS 807

Query: 797 TPAKGTLIEIIFP 809
           TP  G+      P
Sbjct: 808 TPGCGSRFTFTVP 820



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/328 (10%), Positives = 84/328 (25%), Gaps = 14/328 (4%)

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
                 S E +                  +   +L+     + +           A F +
Sbjct: 83  DSADGPSGEPAAVPVRLGLFSWRPDTDTVRAAPSLRRLLGYAGKPRQQSLAGFTQAVFPQ 142

Query: 318 GENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
                 E V              L +      +     +++          L+       
Sbjct: 143 AARKVAEIVALL-EASDERRTLALSFCRRDGEVRQGTLALEPFGGEPDKGRLVLGVLTDV 201

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQ--------WNRENSLAMTFIPFEKANQFPENMP 429
           +   +   L R +   +    R  T +             +LA        A     ++ 
Sbjct: 202 SEPYRLERLVRGEGALVERRVRERTARLERAMERLRRENAALAAGREVRAVAALEGRSLG 261

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
             G   +       ++ +     +   I+ A++D +A+++ EG  L  N   +     P 
Sbjct: 262 HEGFVQDATARDGAEQYLR----RYARIIAASTDMVALVDGEGRYLFVNDTYATALAQPR 317

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
             I+ +    F+ +                      E+         + L +R       
Sbjct: 318 SAIVGRRIAEFIGEAPYRREVAPRLAECLGGRLVQFERWVDLPGLGRRYLGIRYAPWTEE 377

Query: 550 FSSC-YSLTMHDISEWKQEKNKLSHAKK 576
                   ++ D++E +    +L  ++K
Sbjct: 378 DGRQSVVASLRDMTETRLAVEELRESEK 405



 Score = 46.9 bits (110), Expect = 0.015,   Method: Composition-based stats.
 Identities = 44/396 (11%), Positives = 92/396 (23%), Gaps = 27/396 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS--DILHIDPNNHIGDLLKRQNTWYGK 146
           +D  G    +++     +      ++G R+ +         +    + + L  +   + +
Sbjct: 296 VDGEGRYLFVNDTYATALAQPRSAIVGRRIAEFIGEAPYRREVAPRLAECLGGRLVQFER 355

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
               P  G      + +   P    +           +             +  +K  S 
Sbjct: 356 WVDLPGLGRRY---LGIRYAPWTEEDGR---QSVVASLRDMTETRLAVEELRESEKTTSI 409

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV---------SSLTEYYAHKDDVLKTE 257
           L+ I    SS E       +  S         +            L             E
Sbjct: 410 LYRISSAVSSEEDMASLYRTIHSILGETIDTREFFIGLVDKDGDRLDFVLFASATQPPLE 469

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
               L S  + L +         +   +          ++                 +  
Sbjct: 470 PVVGLKSRLTPLTKDNFNDFKETSALIEVMRTAHPLLVTRRGMRLTGLACPGQTPEVWLG 529

Query: 318 GENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
                 + V            G     +   LL    +    +E    L  L  A + +D
Sbjct: 530 VPIRVRQEVLGIMAVMHFSDPGRYGRKDAELLLSVAEQLALGVERRRNLDALRAAKEDAD 589

Query: 378 NNAIKPVMLYRSDRTCI--AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
                           I    +A L   +      L      +              I  
Sbjct: 590 RANQAKSQFLAGMSHEIRTPMNAILGLTEVALRTELTEEQRDYLDT-VSDSARHLLNILN 648

Query: 436 EDVD-TRINKRKMEIEV------MQLCSILEATSDG 464
           + +D ++I  R+ME+E         L S ++    G
Sbjct: 649 DILDFSKIEARQMELEAVDFDLHELLRSAIKTLGLG 684


>gi|168466036|ref|ZP_02699906.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|195631257|gb|EDX49817.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
          Length = 948

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 98/426 (23%), Positives = 172/426 (40%), Gaps = 35/426 (8%)

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
           +     L  I+      L +  I                 E        +  +   E  Q
Sbjct: 303 VPVDLVLERIR-----ILILNAILLNVLVGAGLFTLARMYERRIFIPAESDAQRLEEHEQ 357

Query: 454 L-CSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
               I+ +   GI I+   +G+ + +N            +  ++                
Sbjct: 358 FNRKIVASAPVGICILRTIDGVNILSNELAHTYLNMLTHEDRQR---------------- 401

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571
            LT+I+       ++      T     L +  +  +    +     + D+S   + +  L
Sbjct: 402 -LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSTRVKMEESL 456

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
               + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R       ++
Sbjct: 457 QEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR---LVTAMN 512

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
            S +L+L I++D+LD SKIES ++ +     S  E ++   +        K++ +     
Sbjct: 513 NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFIE 572

Query: 692 NNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
            ++P  +  D   ++Q+  N+LSNAI FT  G  I++       + + +RVRDTGVG+  
Sbjct: 573 PDVPVSLNGDPMRLQQVISNLLSNAIKFTDIG-CIVLHVRC-DGDYLSIRVRDTGVGIPA 630

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+   +  PL
Sbjct: 631 KEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTLRIPL 690

Query: 811 YDTSHP 816
           Y   +P
Sbjct: 691 YGAQYP 696


>gi|299147742|ref|ZP_07040805.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
 gi|298513925|gb|EFI37811.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
          Length = 570

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 87/381 (22%), Positives = 162/381 (42%), Gaps = 16/381 (4%)

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFG-YPVE 490
           I          +  ++     +  +L+  +  I + + +   ++  N+   +  G  P  
Sbjct: 197 IVSTATKRWQVETSLQQSQRTMQKVLDNINANIFVSDYDTLKVIFANKPFREEAGEVPEN 256

Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL-RIIIKKLP 549
               +     LE          L  + +      +      +   ++  ++  + IK L 
Sbjct: 257 AECWRMLNAGLENGCKHCPKPKL--LDANRKFTGVHFWEDYNPVTKRWYTIQSMAIKWLD 314

Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                     DI+  KQ + +L  AK+ AE+    KS FLA +SHEIRTPL AI+GFS +
Sbjct: 315 GRWAIMELATDITTRKQVELELIQAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSL 374

Query: 610 IKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
           +                Y + +  +  L+L++++D+LDISKIE+G ++L    V + +  
Sbjct: 375 LAET-----DEAELRHVYMSLVQENNELLLNLISDILDISKIEAGMIDLVMGRVDVPQLC 429

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
            E I+       +  + +R    +    I AD   + Q+  N L+NA+ FT  G  I +S
Sbjct: 430 REVIATFSHKKRDTAVELRFDENSPQIVIDADKNRIMQVLSNFLTNALKFTTKGS-ITLS 488

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
            +     +V   V DTG G+ + +  +    F ++ +      +G GLGL + +++V+  
Sbjct: 489 YSLEDESQVRFCVTDTGKGIPDEQKHEIFNRFVKLDSF----VQGAGLGLSICQSLVNRM 544

Query: 789 MGKFYIFSTPAKGTLIEIIFP 809
            GK  + S   +G+      P
Sbjct: 545 GGKIGVESREGEGSCFWFTHP 565


>gi|293370018|ref|ZP_06616585.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
 gi|292634936|gb|EFF53458.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
          Length = 570

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 87/381 (22%), Positives = 162/381 (42%), Gaps = 16/381 (4%)

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFG-YPVE 490
           I          +  ++     +  +L+  +  I + + +   ++  N+   +  G  P  
Sbjct: 197 IVSTATKRWQVETSLQQSQRTMQKVLDNINANIFVSDYDTLKVIFANKPFREEAGEVPEN 256

Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL-RIIIKKLP 549
               +     LE          L  + +      +      +   ++  ++  + IK L 
Sbjct: 257 AECWRMLNAGLENGCKHCPKPKL--LDANRKFTGVHFWEDYNPVTKRWYTIQSMAIKWLD 314

Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                     DI+  KQ + +L  AK+ AE+    KS FLA +SHEIRTPL AI+GFS +
Sbjct: 315 GRWAIMELATDITTRKQVELELIQAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSL 374

Query: 610 IKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
           +                Y + +  +  L+L++++D+LDISKIE+G ++L    V + +  
Sbjct: 375 LAET-----DEAELRHVYMSLVQENNELLLNLISDILDISKIEAGMIDLVMGRVDVPQLC 429

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
            E I+       +  + +R    +    I AD   + Q+  N L+NA+ FT  G  I +S
Sbjct: 430 REVIATFSHKKRDTAVELRFDENSPQIVIDADKNRIMQVLSNFLTNALKFTTKGS-ITLS 488

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
            +     +V   V DTG G+ + +  +    F ++ +      +G GLGL + +++V+  
Sbjct: 489 YSLEDESQVRFCVTDTGKGIPDEQKHEIFNRFVKLDSF----VQGAGLGLSICQSLVNRM 544

Query: 789 MGKFYIFSTPAKGTLIEIIFP 809
            GK  + S   +G+      P
Sbjct: 545 GGKIGVESREGEGSCFWFTHP 565


>gi|304317396|ref|YP_003852541.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302778898|gb|ADL69457.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 607

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 98/425 (23%), Positives = 184/425 (43%), Gaps = 25/425 (5%)

Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD-TRINKRKM 447
           ++R        + +I+  +E  L                   N +             K+
Sbjct: 203 TNRFLKPMEYLISSIRKVKEGDLDQIISITTDDELGKLATEFNNMIKRLKQYEESQLGKI 262

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
             E  +  SI+++ SD + ++N +  I+  N A  +LFG   ++ + K F + ++     
Sbjct: 263 MDERNKTLSIVKSISDPLLVLNSDYKIILLNSAAEELFGIEEKNAVNKHFLLSVKDE--- 319

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL--PFSSCYSLTMHDISEWK 565
                  EI S+     +           K   + I   +      S   L  H+I+E+K
Sbjct: 320 ---KLFEEINSIVDSNFVNNKIEQIKYSNKYYDVTISPIENYKSEISDILLVFHNITEFK 376

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
                         +    K DF++ +SHE +TPLT+I+  + +I  ++ G + N +   
Sbjct: 377 --------------ELDQVKDDFISIISHEFKTPLTSIMMGTSIILEEKIGTI-NEKQKS 421

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
               I+  G  + ++VN+L++++KIESGK   +F+  S+   V   I  +   A++K + 
Sbjct: 422 TLLAIEEEGEKLTELVNELIELTKIESGKEVYNFKCCSMFGIVENTIKPLYNIASDKGVN 481

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +  S   ++P + AD   +  +  N+++NA+ +T +G  I IS +   N  + + V+DTG
Sbjct: 482 LSHSVDEDLPCVYADPEKISWVLNNLITNALKYTDAGDDISISASI-DNNMMQISVKDTG 540

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           VG+     +K    F    N      +GTGLGL + K +V+A+ GK +  S    G+   
Sbjct: 541 VGIPKEYKDKIFDKFFHTKNGDDFEIKGTGLGLAVVKEIVEAHGGKVWCESDLDVGSNFM 600

Query: 806 IIFPL 810
              P+
Sbjct: 601 FTLPI 605


>gi|154251573|ref|YP_001412397.1| integral membrane sensor signal transduction histidine kinase
           [Parvibaculum lavamentivorans DS-1]
 gi|154155523|gb|ABS62740.1| integral membrane sensor signal transduction histidine kinase
           [Parvibaculum lavamentivorans DS-1]
          Length = 502

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 99/260 (38%), Positives = 158/260 (60%), Gaps = 6/260 (2%)

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           SE ++ +  LS     +E  +  K+DFLA +SHE+RTPL AIIGFSE+I NQ FGP+G P
Sbjct: 242 SEQRRSERLLS----RSEAANRAKNDFLAIMSHELRTPLNAIIGFSEIISNQMFGPVGQP 297

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
           +Y++YA  I  SG  +L I+ND+LDISK E+GK+ L  EP+   EA++  + + +  A+E
Sbjct: 298 KYVDYAADIRSSGAHLLSIINDILDISKAEAGKLQLEEEPIDPVEALNSTMRMFRQRASE 357

Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
             + +     ++IP I+AD R   Q+A+N+ SNA+ FTP  G++ +        +++L V
Sbjct: 358 LGVELSFRVRDDIPWIIADPRLFNQVAINLTSNALKFTPENGEVSVELGLNPAGDMVLAV 417

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
           RDTG+G+   +  +  +PF Q+ ++     +GTGLGLPL + +++ + G   + S   +G
Sbjct: 418 RDTGIGIKAADTTRIFEPFVQVEDAMSRTQQGTGLGLPLVRKIMNLHGGSIELESVVDEG 477

Query: 802 TLIEIIFPLYD--TSHPHDC 819
           T+    FP      + P+D 
Sbjct: 478 TIARATFPRSRFVAAQPNDI 497


>gi|307824660|ref|ZP_07654884.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
           SV96]
 gi|307734314|gb|EFO05167.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
           SV96]
          Length = 929

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 94/399 (23%), Positives = 182/399 (45%), Gaps = 32/399 (8%)

Query: 444 KRKMEIEVMQLCSILEATSD-------GIAIINREGIILSTNRAVSKLFGYPVED--ILR 494
           +R++E     +   +E  +D       G   +N    +L  +  +  LF    +      
Sbjct: 393 ERQVEQRTTDIRLAMEQLNDAQHIAQVGSWELNLSNSLLIWSDEIYHLFEIDKDQFGATY 452

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554
           + F   +       +N   +  L       +    L   +  K ++ R            
Sbjct: 453 EAFLNAIHPEDRDAVNEAYSGSLLTQQPYEITHRLLMPDRRVKYVTERCASYFDTDGKPV 512

Query: 555 --SLTMHDISEWKQEKNKLSH------------------AKKIAEKESSHKSDFLARVSH 594
               T+ D++E K+ +  L H                  AK+ A++ ++ KS+FL+R+SH
Sbjct: 513 RSVGTVQDVTELKRTELALKHLNEELEQRVQQRTELLLKAKEEADRANNAKSEFLSRMSH 572

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           E+RTP+ AI+GF+++++  R  P+      +    I  +G  +L+++N++LD+++IE+G+
Sbjct: 573 ELRTPMNAIMGFAQLLETDRETPITLD-QADNVREIRHAGQHLLELINEVLDLARIETGR 631

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714
           + L  EPV +   + E ++L+Q     +RI ++         + AD   ++QI LN+LSN
Sbjct: 632 IELSLEPVEVPLLIGECMALLQPLTLGRRIELKLDIDGT-GTVQADRLRLRQILLNLLSN 690

Query: 715 AIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           AI +    G + I+    +   + + V D+G G+    + +  KPF +I ++     EGT
Sbjct: 691 AIKYNRDRGNVHITCQPVAAGRIRIAVCDSGRGIAVDAMTRLFKPFERIESAYDG-IEGT 749

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
           G+GL L+K +V+A  G   + S    G+   +  P  + 
Sbjct: 750 GIGLALSKRLVEAMGGTIGVESVVGAGSTFWVELPAAEA 788


>gi|298246974|ref|ZP_06970779.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297549633|gb|EFH83499.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 725

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 110/735 (14%), Positives = 236/735 (32%), Gaps = 54/735 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + ID        +       G     + G  L   +   H+   +    + K + T   
Sbjct: 29  IFFIDDAATTVYANASAQTITGATREDLCGKPLWRGAP--HLVSTSLYQAVQKTKQTRAP 86

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI-VHVNRVDNDPRALGKRLDKKF 204
               +    T  ++ + L+               G  + VH  R            +   
Sbjct: 87  IEVEYVSPVTRTWLHVQLS-----------PAVGGLLLHVHEQREPLPRWETFVPDEHLA 135

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQS---PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
             + +           +  +            +R +  +               +++   
Sbjct: 136 DDVLKNLYVGVGCLTPEGILLEINEVPLADAQIRREEVIGQPFAQTPWWSFYPASQQQLR 195

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGT---LQNNSKESFEYLSHRNHPSLSAYFDEG 318
                +S  E   F T+   +     +               EYL +           EG
Sbjct: 196 AAITRASRGETVRFETLVHPREGMDLHLEATITPHEEVDHHVEYLVYVGTDITERKRAEG 255

Query: 319 ENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
                  +D  P   ++    G++ Y N   +       +D I+  G +  +    +   
Sbjct: 256 ATY--ALMDALPHRVWIARSDGSVTYHNQRLIDYLVM-PLDQIQGDGWMVGVHPDDRPQV 312

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
             A +  +  R                               + N     +   G   + 
Sbjct: 313 QEAWQAAIQTRG-----PYEVEHRLRDGISGAYRWFLARGVPQRNAQGTILHWFGTCTDI 367

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL--RK 495
            D +  +  +     +  +++ +   GI +I  E  I+  N    ++ GY  ED+   R 
Sbjct: 368 EDQKRIEEALHQSQERASALMNSNIIGINVIEGE-QIVDANDTFLRMTGYTREDLRAGRI 426

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555
            +         +       E+ +       EK  +    +   L + +           +
Sbjct: 427 NWRHMTPPEYLARTQQAHQELATQQSMTPYEKEYVCQ--DGSRLPVLVGGGVFQHHPLQA 484

Query: 556 LTMH-DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
           +T   D S  K+ + +              K D +   SHE+ TPLTA+   ++ +  +R
Sbjct: 485 ITFVLDNSARKELEQR--------------KDDLINMASHELGTPLTAVKMQTQ-LVRKR 529

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                +       + ++    L+  ++ +LLD+S+I++G++    E V L   + +    
Sbjct: 530 LEKQSHHEAATALSRVEGPIKLLERLIGELLDVSRIQAGRLEYVRERVDLGSLLRDVTDT 589

Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
           +  +     I++R +   ++   + D   + Q   N+LSNAI ++P    + I  + + +
Sbjct: 590 MHHFHPSHTIVVRETVQTSL---IGDRDRLGQAFTNLLSNAITYSPDAETVEIDLSASED 646

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
             V +RVRD G+G+   + +K  + F + P+  Q    G G+GL +   +V  + G   +
Sbjct: 647 A-VTVRVRDHGLGILQEQRDKIFERFYRAPDLSQRAIPGLGMGLYIVAEIVKGHEGNITV 705

Query: 795 FSTPAKGTLIEIIFP 809
            S   KG+   +  P
Sbjct: 706 DSEIGKGSTFTVTLP 720



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 38/245 (15%), Positives = 67/245 (27%), Gaps = 22/245 (8%)

Query: 330 PIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388
           P    F+       YAN S   +T     D              P L   +  + V   +
Sbjct: 26  PDAIFFIDDAATTVYANASAQTITGATREDLCGKPLWRGA----PHLVSTSLYQAVQKTK 81

Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
             R  I         +      L +   P         +  +  +   +           
Sbjct: 82  QTRAPIEVEYVSPVTR----TWLHVQLSPAVGGLLLHVHEQREPLPRWETFVPDEHLA-- 135

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
                   +L+    G+  +  EGI+L  N           E+++ +PF      +    
Sbjct: 136 ------DDVLKNLYVGVGCLTPEGILLEINEVPLADAQIRREEVIGQPFAQTPWWSFYPA 189

Query: 509 MNHYLTEILSLDLR-QTLEKITLGSTKEEKLLSLRIIIKK----LPFSSCYSLTMHDISE 563
               L   ++   R +T+   TL   +E   L L   I                  DI+E
Sbjct: 190 SQQQLRAAITRASRGETVRFETLVHPREGMDLHLEATITPHEEVDHHVEYLVYVGTDITE 249

Query: 564 WKQEK 568
            K+ +
Sbjct: 250 RKRAE 254


>gi|220922103|ref|YP_002497404.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium nodulans ORS 2060]
 gi|219946709|gb|ACL57101.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium nodulans ORS 2060]
          Length = 524

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 87/529 (16%), Positives = 194/529 (36%), Gaps = 33/529 (6%)

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP--FFVYSHGNLFYANPSFLLLT 352
              E        +HP+ +A             D         +   G +    P    ++
Sbjct: 2   LLGEVPGLEECLDHPTAAAEAGRLAGAAERQFDTVTEVAVVTLDRDGRVTGWYPGPEHVS 61

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
            +     +     LS       ++     + + + R          RL      R     
Sbjct: 62  GWHEGALVGR--HLSVFFPEEDVAAGKPERVLAIARETGRYEEQGVRLGA----RGQPYL 115

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG 472
              +     +   E +    +     +    +  +      L SILE   D + +I+ + 
Sbjct: 116 GKVLVMPLRDASGEVLGFTKVIWSVTERVAAEEALRTREAHLRSILETIPDAMIVIDEQA 175

Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT--LEKITL 530
            I S +    + FGY  ++++ +  ++ + +   S  + Y+   L+   R+   + ++ +
Sbjct: 176 RIQSFSATAVRQFGYEPDEVIGRNVSLLMPEPYRSQHDGYMARYLATGERRIIGIGRVVV 235

Query: 531 GSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESS--HKS 586
           G  K+     + + + ++       ++  + D++E ++ + +L   +      S      
Sbjct: 236 GQRKDGSTFPMELAVGEMRSGGVRYFTGFIRDLTERQRTETRLQELQSELVHMSRFTALG 295

Query: 587 DFLARVSHEIRTPLTAIIGFSE---VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
           +  + ++HEI  PLTAI  + +    +  +  GP   P   +              ++  
Sbjct: 296 EMASTLAHEINQPLTAIASYLKGCRRLLQRMQGPEV-PLLADAVGQAADQALRAGQVIRH 354

Query: 644 LLDI-SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702
           L +  ++ ES           L + + EA +L  + A E+ + +  +F  + P +LAD  
Sbjct: 355 LREFVARGES-----ERHIEGLPKLIEEASALALVGAKERGVRVTFAFDPDAPLVLADRI 409

Query: 703 SVKQIALNILSNAIHFTPS--GGQIIISTTHTS-NEEVILRVRDTGVGMTNYELEKAMKP 759
            V+Q+ LN++ NAI         ++++ T        V + V DTG G+      +  +P
Sbjct: 410 QVQQVLLNLIRNAIEAMQETPRRELVVRTRARPAEGLVEIVVSDTGTGIAPEIASQLFQP 469

Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           F         +  G G+GL + + +V+++ GK ++ S P +G       
Sbjct: 470 FVTT------KARGMGVGLSICRTIVESHGGKIWVESRPGQGADFRFTL 512



 Score = 55.0 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/248 (10%), Positives = 56/248 (22%), Gaps = 10/248 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK-RQNTWYGKT 147
           +D  G +           G +   ++G  L  V              +L   + T   + 
Sbjct: 44  LDRDGRVTGWYPGPEHVSGWHEGALVGRHLS-VFFPEEDVAAGKPERVLAIARETGRYEE 102

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
               +          +  +P+   + E  GF    ++             +  +     +
Sbjct: 103 QGVRLGARGQPYLGKVLVMPLRDASGEVLGFTK--VIWSVTERVAAEEALRTREAHLRSI 160

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPH--LRMKNKVS----SLTEYYAHKDDVLKTEKYPL 261
            E       V  E+  I S  +          ++V     SL     ++          L
Sbjct: 161 LETIPDAMIVIDEQARIQSFSATAVRQFGYEPDEVIGRNVSLLMPEPYRSQHDGYMARYL 220

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
            T E   +           +  T        +  S     +       +     +     
Sbjct: 221 ATGERRIIGIGRVVVGQRKDGSTFPMELAVGEMRSGGVRYFTGFIRDLTERQRTETRLQE 280

Query: 322 TPETVDKC 329
               +   
Sbjct: 281 LQSELVHM 288


>gi|152991089|ref|YP_001356811.1| two-component sensor histidine kinase/response regulator
           [Nitratiruptor sp. SB155-2]
 gi|151422950|dbj|BAF70454.1| two-component sensor histidine kinase/response regulator
           [Nitratiruptor sp. SB155-2]
          Length = 1044

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 79/252 (31%), Positives = 127/252 (50%), Gaps = 13/252 (5%)

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           +  K+ ++     K  AE+ S  KS FLA +SHEIRTPL  IIGF++++KN    P    
Sbjct: 377 TALKKAQDA----KTAAEEASHAKSMFLANMSHEIRTPLNGIIGFTDLLKNTELTP---- 428

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
              E+ N I++S   +L+I+N +LD+SKIES K+ +     +  E    AI +    A E
Sbjct: 429 EQREFVNIIEKSSENLLEIINAILDLSKIESKKIEIENIVFNPIEEFENAIEVYAPRAAE 488

Query: 682 KRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT----HTSNEE 736
           K I        ++   +  D   +K++ +N++SNAI FT  GG + +       +    E
Sbjct: 489 KDINFALFVDPHLNKPLKGDPTKIKEVLINLISNAIKFTDRGGNVTVEIRKVKEYNERAE 548

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           +   VRDTG+G+   + ++  + F Q  +S   +  GTGLGL ++   +    G+  + S
Sbjct: 549 IYFEVRDTGIGIPEDKQKQIFEAFSQADSSVTRKFGGTGLGLTISSEFIKLMGGRLNLES 608

Query: 797 TPAKGTLIEIIF 808
              KGT      
Sbjct: 609 EVGKGTKFFFTL 620


>gi|16765598|ref|NP_461213.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|167549739|ref|ZP_02343498.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|167992601|ref|ZP_02573698.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168242383|ref|ZP_02667315.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|168261719|ref|ZP_02683692.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|194449775|ref|YP_002046325.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|200387073|ref|ZP_03213685.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|20139412|sp|P58662|RCSC_SALTY RecName: Full=Sensor protein rcsC; AltName: Full=Capsular synthesis
           regulator component C
 gi|16420809|gb|AAL21172.1| sensory histidine kinase in two-component regulatory system with
           RcsB [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|194408079|gb|ACF68298.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|199604171|gb|EDZ02716.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|205325492|gb|EDZ13331.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205329183|gb|EDZ15947.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205338298|gb|EDZ25062.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|205349323|gb|EDZ35954.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|229918798|gb|ACQ91083.1| RcsC [Salmonella enterica subsp. enterica serovar Typhimurium str.
           SL1344]
 gi|261247479|emb|CBG25306.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267994357|gb|ACY89242.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301158829|emb|CBW18342.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312913261|dbj|BAJ37235.1| hybrid two-component sensor kinase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321223029|gb|EFX48100.1| Two-component sensor protein RcsC [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|323130601|gb|ADX18031.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|332989204|gb|AEF08187.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 948

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 98/426 (23%), Positives = 172/426 (40%), Gaps = 35/426 (8%)

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
           +     L  I+      L +  I                 E        +  +   E  Q
Sbjct: 303 VPVDLVLERIR-----ILILNAILLNVLVGAGLFTLARMYERRIFIPAESDAQRLEEHEQ 357

Query: 454 L-CSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
               I+ +   GI I+   +G+ + +N            +  ++                
Sbjct: 358 FNRKIVASAPVGICILRTIDGVNILSNELAHTYLNMLTHEDRQR---------------- 401

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571
            LT+I+       ++      T     L +  +  +    +     + D+S   + +  L
Sbjct: 402 -LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSTRVKMEESL 456

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
               + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R       ++
Sbjct: 457 QEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVER---LVTAMN 512

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
            S +L+L I++D+LD SKIES ++ +     S  E ++   +        K++ +     
Sbjct: 513 NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFIE 572

Query: 692 NNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
            ++P  +  D   ++Q+  N+LSNAI FT  G  I++       + + +RVRDTGVG+  
Sbjct: 573 PDVPVSLNGDPMRLQQVISNLLSNAIKFTDIG-CIVLHVRC-DGDYLSIRVRDTGVGIPA 630

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+   +  PL
Sbjct: 631 KEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTLRIPL 690

Query: 811 YDTSHP 816
           Y   +P
Sbjct: 691 YGAQYP 696


>gi|167629252|ref|YP_001679751.1| signal transduction histidine kinase [Heliobacterium modesticaldum
           Ice1]
 gi|167591992|gb|ABZ83740.1| signal transduction histidine kinase [Heliobacterium modesticaldum
           Ice1]
          Length = 662

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 83/289 (28%), Positives = 139/289 (48%), Gaps = 24/289 (8%)

Query: 539 LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
           + +     +            ++ E +Q +  L  AK+ A+  +  KS FLA +SHEIRT
Sbjct: 324 IIIHASEMEAEIRRKTLALEKELQERRQMQTALQLAKEEADVANRAKSAFLANMSHEIRT 383

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
           P+ AIIG ++++         N    ++ +    +GN +L ++ND+LD+SKIESGK  L 
Sbjct: 384 PMNAIIGIADLLWETPL----NEEQKKFVHIFRDAGNNLLALINDILDLSKIESGKQVLQ 439

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIH 717
                LD  V++ I+L    A EK + +     ++IPR+L  D+ +++Q+  N+L NAI 
Sbjct: 440 PVEFYLDNLVNDTIALFSTRAQEKGLELTVRLPDDIPRLLLGDVGALRQVLFNLLGNAIK 499

Query: 718 FTPSGGQ-IIISTT---HTSNE---------------EVILRVRDTGVGMTNYELEKAMK 758
           FT +G   + I       + +                 +   V DTG+G+     ++   
Sbjct: 500 FTETGAVSLHIEVADPVVSPSGATADPNPPHFPGQPVHLRFSVIDTGLGIPPEWQDRIFD 559

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
            F Q+  S   R  GTGLGL + K +V+   G+ ++ S P KG+     
Sbjct: 560 SFTQVDASLTRRFGGTGLGLAICKRLVELMGGQIWVDSEPGKGSTFTFT 608


>gi|116050119|ref|YP_791066.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115585340|gb|ABJ11355.1| putative histidine kinase [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 699

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 89/571 (15%), Positives = 189/571 (33%), Gaps = 40/571 (7%)

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ--NNSKESFEYLSHRNHPSLSAYFD 316
                                  + +       LQ  ++S+     +     P +     
Sbjct: 4   AGRAGVFRKVGQVPGASQRAAGRRSSYYLAGCALQPGSSSRRVNTSMKTTRKPKVPLNQA 63

Query: 317 EGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
               L  E VD   I   + S G +   +     L  + + + +      +         
Sbjct: 64  TRNRLLDEAVDDYAIH-TLDSAGRIASWSAGAARLFGHDASEILG--CDYACFHTRKDRD 120

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
                + +    ++            ++ N +   A   I     +   + +    +  +
Sbjct: 121 AGVPQQALRQADAEGR---FETEGWRVRSNGKRFWAQVVIDAI-RDSQGQLLGFAQLIHD 176

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
             + R  K  +     Q   ++++ +D  I +++  G I + N    ++ GY  E+++ +
Sbjct: 177 LSEGRAAKEALRRSQEQFRLLVQSVTDYAIYMLDHRGRITNWNLGAQRIKGYLPEEVIGR 236

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555
            F+ F               + + +     EK      K+       ++I  +  S    
Sbjct: 237 HFSCFYTPEDREAGEPA-RGLAAAEREGRFEKEGWRVRKDGSRFWANVVIDPIRDSDGRL 295

Query: 556 L----TMHDISEWKQEKNKLSHAKKIAEKESSH--KSDFLARVSHEIRTPLTAIIGFSEV 609
           +       DI+   + + +L  A++   +             V+H+    LT IIG   +
Sbjct: 296 IGFAKVTRDITHRIEAERELERARQELFQAQKMESLGHLTGGVAHDFNNLLTVIIGSLGL 355

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           +K +  G   + R  +       +     ++   +L  ++    K  L  +P ++ + + 
Sbjct: 356 LKKRLPG---DQRTADLLQNALEAAQRGANLTQRMLSFAR----KQRLDPQPCAIPDLLR 408

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
               L+        + I T F  ++   L D   ++   +N+ +NA    P+GG+I+ S 
Sbjct: 409 GMTDLLIHSL-GPSVSIETRFPLDLDLGLTDANQLELSIINLATNARDAMPNGGRIVFSA 467

Query: 730 -----------THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
                             + L + DTG GM    L +A++PF          G GTGLGL
Sbjct: 468 SNQRVPADNPHRLAPGNYICLSISDTGSGMDEETLRRAVEPFYTTKG----VGRGTGLGL 523

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            +   + +   G+  + S P  GT   I  P
Sbjct: 524 SIVDGLAEQLGGRLTLESQPGVGTTANIWIP 554



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 25/244 (10%), Positives = 73/244 (29%), Gaps = 8/244 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D+ G +   S    +  G+ A +++G            D       L +       +T 
Sbjct: 81  LDSAGRIASWSAGAARLFGHDASEILGCDYACFHTRKDRDAGVPQQALRQADAEGRFETE 140

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
            W +          +    I     +  GF    ++H        +   +R  ++F  L 
Sbjct: 141 GWRVRSNGKRFWAQVVIDAIRDSQGQLLGFAQ--LIHDLSEGRAAKEALRRSQEQFRLLV 198

Query: 209 EIKKGHSS-VEKEKYDIFSQQSPPPHLR--MKNKVSS--LTEYYAHKDDVLKTEKYPLLT 263
           +    ++  +   +  I +       ++  +  +V     + +Y  +D         L  
Sbjct: 199 QSVTDYAIYMLDHRGRITNWNLGAQRIKGYLPEEVIGRHFSCFYTPEDREAGEPARGLAA 258

Query: 264 SEESSLPEQEDFH-TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
           +E     E+E +    + +++        ++++      +       +     +      
Sbjct: 259 AEREGRFEKEGWRVRKDGSRFWANVVIDPIRDSDGRLIGFAKVTRDITHRIEAERELERA 318

Query: 323 PETV 326
            + +
Sbjct: 319 RQEL 322



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/239 (10%), Positives = 50/239 (20%), Gaps = 5/239 (2%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + +D  G +   +    +  G    ++IG            +       L   +     
Sbjct: 206 IYMLDHRGRITNWNLGAQRIKGYLPEEVIGRHFSCFYTPEDREAGEPARGLAAAEREGRF 265

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +   W +         ++   PI   +    GF       V R         + L++   
Sbjct: 266 EKEGWRVRKDGSRFWANVVIDPIRDSDGRLIGF-----AKVTRDITHRIEAERELERARQ 320

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
            L + +K  S             +    +     +         +   L           
Sbjct: 321 ELFQAQKMESLGHLTGGVAHDFNNLLTVIIGSLGLLKKRLPGDQRTADLLQNALEAAQRG 380

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
            +       F                L+  +      L            D    LT  
Sbjct: 381 ANLTQRMLSFARKQRLDPQPCAIPDLLRGMTDLLIHSLGPSVSIETRFPLDLDLGLTDA 439


>gi|326693101|ref|ZP_08230106.1| histidine protein kinase; sensor protein [Leuconostoc argentinum
           KCTC 3773]
          Length = 623

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 89/516 (17%), Positives = 188/516 (36%), Gaps = 43/516 (8%)

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIA 363
           +     S        +N   + +   P+     + G +     S +++         +  
Sbjct: 124 AIAGEQSFLKTRIINDNGDRKELLTIPLGV---TSGRVRDV--SGVIVVAASLAPVYQHV 178

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS-ARLHTIQWNRENSLAMTFIPFEKAN 422
             +  L     L    A   + L+ +             T +    +   +       ++
Sbjct: 179 NSVMRLFIIAGLIALVASIGLALFLAHTLTRPIEQIDEQTTKIANGDYSMVNH--IYGSD 236

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
           +              V+          E  +L S+L   +DG+   NR G +   N+A +
Sbjct: 237 EIGHLAQSVNELSTRVEESTETVNA--ERNRLDSVLTHMADGVLAANRRGEVTIINQAAA 294

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR-QTLEKITLGSTKEEKLLSL 541
              G   E+ + +     L       +   L  +    +      K  +          +
Sbjct: 295 DFVGVDREEAIGQHVVDLLHLRGKRTLRDMLENLDDFQVDLSDAGKEVVVQA------YV 348

Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
            +I ++  F S   + +HDI+E ++  ++                 F++ VSHE+RTPLT
Sbjct: 349 SLIKRQSGFISGLVVVLHDITEQQRIDSERRM--------------FVSNVSHELRTPLT 394

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           ++  + + +               + + +      ++ ++NDLL++S+++ G M++  E 
Sbjct: 395 SVRSYVDALAEGAIN--DPEMAQNFLDVVQDETQRMIRMINDLLELSRLDQGTMDVKLEV 452

Query: 662 VSLDEAVSEAISLVQLYANE---------KRILIRTSFANNIPRILADLRSVKQIALNIL 712
           V+L+   +  ++   +             K   I+  F N       D     Q+  NI+
Sbjct: 453 VNLNSLFNFVLNRFDMIIENDAKNADTPNKSYNIKREFTNEDVWAEVDPDKFTQVLDNIM 512

Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           +NA+ ++P GG I       +    IL + D G+G+   +L+     F ++  S+     
Sbjct: 513 NNAVKYSPDGGTITARL-IKTKTRAILSISDQGLGIPRKDLDNIFNRFFRVDKSRSRAQG 571

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           GTGLGL ++K +V+   G+ ++ S   KG+   I  
Sbjct: 572 GTGLGLAISKEVVEKFNGRIWVDSVENKGSTFYISL 607


>gi|300869576|ref|ZP_07114157.1| hypothetical protein OSCI_4120036 [Oscillatoria sp. PCC 6506]
 gi|300332444|emb|CBN59357.1| hypothetical protein OSCI_4120036 [Oscillatoria sp. PCC 6506]
          Length = 947

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 101/673 (15%), Positives = 228/673 (33%), Gaps = 55/673 (8%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN-HIGDLLKRQNTWYGKTT 148
              GY K ++    K +G    +++     ++            +  L+        +  
Sbjct: 275 GRDGYFKRVNSAFEKALGYSIEELLKTPFIELVHPEDRTSTLVEVEKLMNGIVNARFENR 334

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +G+  Y  +   + P +           + I          + +     ++F  + 
Sbjct: 335 YRCKDGS--YKWLSWNSTP-FREEGLI-----YAIARDITDSKQVQDVITEERERFRQMA 386

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRM------KNKVSSLTEYYAHKDDVLKTEKYPLL 262
           E       +   + + F   SP              +   L   + H +D  +       
Sbjct: 387 ETIDQVFWMTDPQKNQFLYVSPAFEQIWGITCLEVYENPQLFFEFIHPEDRDRAIGAVET 446

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS----AYFDEG 318
             +     E       + +          ++N+  E +  +   +  +          E 
Sbjct: 447 QIQGEYDREYRIIRR-DGSVRWIHDRAFPIRNSLGEVYRIVGVADDITDRHYAKVALYER 505

Query: 319 ENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
           E     T ++  +        G +   N  +  +  Y   + I       + L+     D
Sbjct: 506 EQQFRVTFEQAAVGIAHGGLDGEMLLVNQKYCDILGYPHEEMI-----TKSYLEITHPDD 560

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
            +     M           S     I+ +  + +          +          +  + 
Sbjct: 561 LHLDNDYMRQLIAGEIPYFSLEKRYIRKDG-SCVWANLTVSLLRSPDGTPQYNMAVIEDI 619

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII----LSTNRAVSKLFGYPVEDIL 493
            D +  +  ++    +    L+ ++DGI     +  I    +  +   +++   P   I 
Sbjct: 620 SDRKQAEAALQASEERWQLALKGSNDGIW----DWEIKTGEVFYSPRWNEILEDPDGAIA 675

Query: 494 R--KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
                ++  +  +    +   + +  +               K      +    +     
Sbjct: 676 NNLDEWSNRVHPDDIDAVRSAIADHFA-KKTSFYITEHRIQCKNGNYKWILHRGRATWDE 734

Query: 552 SC----YSLTMHDISEWKQEKNK-------LSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
           +        +  DI++ KQ + +       L  A+  AE  +  KS+FLA +SHEIRTP+
Sbjct: 735 AGNPLRMVGSATDITDRKQAEQQRSELIASLQEARDAAEAATRAKSEFLANMSHEIRTPM 794

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
            A+IG + ++ +    P       ++   +  SG+ +L ++ND+LD SKIE+GK+ L  +
Sbjct: 795 NAVIGMTSLLLDTPLTP----EQRDFVETVRTSGDALLALINDILDFSKIEAGKLELEEQ 850

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFT 719
           P  L + +  ++ L+   A EK + +      ++P  I+ D+  ++QI +N+LSNA+ FT
Sbjct: 851 PFDLRDCIEASLDLLAPKAAEKGLDLAYIIDGDVPSTIVGDISRLRQILVNLLSNAVKFT 910

Query: 720 PSGGQIIISTTHT 732
             G ++++S T  
Sbjct: 911 AKG-EVVVSVTAR 922



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 45/362 (12%), Positives = 100/362 (27%), Gaps = 34/362 (9%)

Query: 241 SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF 300
             +    A   D            +  ++      H I          F           
Sbjct: 66  GLVESTLASAIDRTLVTIKESELPDIFAVLNLMASHQIFHLPILDDAGFLVGAIEQSNLL 125

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDD 359
           + L   ++ +      + E      ++  P   F V + G                  + 
Sbjct: 126 KLLGSEDYLTAKEAQRKSEEHNLLILNALPDLIFMVSADGTYLDVKSGKDEDLLLPRQEL 185

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
           I     +  +L +   +   A     +  S          L++ ++N E+ +  T     
Sbjct: 186 IGKK--VEAVLPSALATMVMASIQQAISTSQEQNCEYELILNSKKYNFESRILAT----- 238

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
                        I     + +      E+E  +  +I     D + I  R+G     N 
Sbjct: 239 ------NEAEVLIIIRNITERKQA----ELERDRFFTI---DIDLLCIAGRDGYFKRVNS 285

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
           A  K  GY +E++L+ PF   +     +     + ++++  +            K+    
Sbjct: 286 AFEKALGYSIEELLKTPFIELVHPEDRTSTLVEVEKLMNGIVNARF--ENRYRCKDGSYK 343

Query: 540 SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS-----------HKSDF 588
            L                  DI++ KQ ++ ++  ++   + +             K+ F
Sbjct: 344 WLSWNSTPFREEGLIYAIARDITDSKQVQDVITEERERFRQMAETIDQVFWMTDPQKNQF 403

Query: 589 LA 590
           L 
Sbjct: 404 LY 405


>gi|237793656|ref|YP_002861208.1| sensory box histidine kinase [Clostridium botulinum Ba4 str. 657]
 gi|229262135|gb|ACQ53168.1| sensory box histidine kinase [Clostridium botulinum Ba4 str. 657]
          Length = 615

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 89/412 (21%), Positives = 169/412 (41%), Gaps = 12/412 (2%)

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
           W     + +      +  +    +     + E    R  ++ +         ++  + D 
Sbjct: 178 WPLGYYVNIQKEDLRQKEEEVNILANKLDQKEI-QKRNMEQLLMKNENCYNLLIRNSKDA 236

Query: 465 IAIINREGIILSTNRAVSKLFGYPVED-ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
           I +  R G I+  N  + ++ GY  +           + ++    +   L  +       
Sbjct: 237 ILVH-RYGKIIFANERLKQMLGYKRDYNFEDIDIKSLIPKDQYDTVKDELENLYCGSKNI 295

Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
              +  + + KE K +                  +HD++   Q +      KK  E  + 
Sbjct: 296 VKFQHNVINNKE-KTIQNTSTYVIYDGMPTIFSILHDVTSKIQVEKLEQDVKKNIELLNE 354

Query: 584 HK------SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
            +      ++FL+ +SHE++TPL  I    + +       +   +  +Y   I ++   +
Sbjct: 355 SREYNKLITEFLSNISHELKTPLNVIFTAVQ-LLGFYEKDVDYEKQDKYLKLIKQNCYRL 413

Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697
           + ++N+LLD +K++SG + L+    ++   + E    V  YA  K I I          I
Sbjct: 414 MKLINNLLDTTKLDSGYLKLNLVNYNIVSLIEEITLSVTSYAESKGINIIFDTDVEEKII 473

Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757
             D   +++I LN+LSN+I FT  GG I +       E V + V+DTGVG+ + +LE   
Sbjct: 474 AVDTDKIERIILNLLSNSIKFTNPGGHIFVKIK-DCGENVYIHVKDTGVGIPSDKLESIF 532

Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           + F Q+  + +   EGTG+GL L K+ V+ + G  +I S   +GT   I  P
Sbjct: 533 ERFFQVDKTLKKNKEGTGIGLHLVKSFVEMHKGTVHIKSELGQGTEFIIKLP 584


>gi|312864534|ref|ZP_07724765.1| PAS domain S-box protein [Streptococcus downei F0415]
 gi|311099661|gb|EFQ57874.1| PAS domain S-box protein [Streptococcus downei F0415]
          Length = 453

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 84/377 (22%), Positives = 161/377 (42%), Gaps = 35/377 (9%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
            +    +  E  +L S+L   SDG+   NR G I   N    K      E+ L       
Sbjct: 84  HLTHENLSQERNRLASVLSYMSDGVLATNRVGKITMINDTARKQLNLTREEALEMNIMDL 143

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SL 556
           ++ +  +     +         QT E       + ++ ++LR+        S +      
Sbjct: 144 IDSDDYN-YRDLI--------TQTPEVTLYRRNEYDEFITLRVNFALNRRESGFISGLVA 194

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            +HD +E ++E+ +                 F++ VSHE+RTPLT++  + E +     G
Sbjct: 195 VLHDTTEQEKEERERRL--------------FVSTVSHELRTPLTSVKSYLEALNE---G 237

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV- 675
            L       +        N ++ +++DLL +S+I++   ++  E  +    ++  ++   
Sbjct: 238 ALNEEVAPSFIQVSLDETNRMMRMISDLLQLSRIDNDTSHIEVEMTNFTAFITVILNRFD 297

Query: 676 ---QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
                  ++K   I  ++  N   +  D   + Q+  NIL+NAI ++P GGQI +S T T
Sbjct: 298 QIKSQQDSDKDYEIVRNYPLNPIWVEIDTDKMTQVLDNILNNAIKYSPDGGQITVSMTTT 357

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
              ++I+ + D G+G+   +L      F ++  ++     GTGLGL +AK ++  + G  
Sbjct: 358 ET-QLIISISDQGLGIPKKDLPLIFDRFYRVDKARSRAQGGTGLGLAIAKEIIKQHQGFI 416

Query: 793 YIFSTPAKGTLIEIIFP 809
           +  S   KG+   I+ P
Sbjct: 417 WAKSEYGKGSTFTIVLP 433


>gi|158340469|ref|YP_001521463.1| two-component hybrid sensor and regulator [Acaryochloris marina
           MBIC11017]
 gi|158310710|gb|ABW32324.1| two-component hybrid sensor and regulator [Acaryochloris marina
           MBIC11017]
          Length = 677

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 92/412 (22%), Positives = 169/412 (41%), Gaps = 48/412 (11%)

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
            +     +++      +IL++    +   +  G++ + N    K FGY  E+I+ +   +
Sbjct: 3   EKFEADSLQLLQTWQQTILDSADFIVISTDINGVVQTLNAGALKQFGYSSEEIIGRVTPI 62

Query: 500 FLEQNTPSVMNH-----YLTEILSLDLRQTL---------EKITLGSTKEEKLLSLRIII 545
               +   V+        L  ++  D+   +         E I     K+     + + +
Sbjct: 63  IFHDSAEIVLRAQVLSKELGRVIEADVETLIVKARMGMADENIWTLIRKDHSQFMVCLSV 122

Query: 546 KKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEK------------------ESS 583
           K L  +S     +     D++  ++ +  L       E+                   + 
Sbjct: 123 KALRDASGQLKGFLGIGKDVTAQQETEAALRCLNANLEQLVEERTSQLNTAIETAEIANQ 182

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
            KS F+A +SHE RTPL AI+GFS+++   R      P      + I RSG  +L +VN+
Sbjct: 183 AKSKFIANMSHEFRTPLNAIMGFSQLLLRDRRIT---PDQQSRLDVIYRSGEHLLSLVNE 239

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLR 702
           ++ +SKIE G +    + V+L         L  L A+ K I ++   A ++PR I  D +
Sbjct: 240 VITLSKIEDGVLTYEPKDVNLYHLCEGVKELFSLQASSKDIQLQLRIAPDVPRFIRTDAQ 299

Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTS------NEEVILRVRDTGVGMTNYELEKA 756
            ++QI +N+L NA+ +T  G  +                 +   ++DTG G+  + L K 
Sbjct: 300 KLRQILINLLGNALKYTKRGS-VECRVQWRPPRTETLPHHIEFSIQDTGPGIPQHLLPKL 358

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            + F Q     + +  G GLGL + +  V    G   I ST   GT+++   
Sbjct: 359 FEHFVQ-DPLTRDKFGGIGLGLCICQRFVHLMGGDISIESTEDHGTIVDFYI 409



 Score = 44.2 bits (103), Expect = 0.10,   Method: Composition-based stats.
 Identities = 35/348 (10%), Positives = 85/348 (24%), Gaps = 41/348 (11%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL------------ 136
            D +G ++ ++    K  G  + ++IG     V+ I+  D    +               
Sbjct: 31  TDINGVVQTLNAGALKQFGYSSEEIIGR----VTPIIFHDSAEIVLRAQVLSKELGRVIE 86

Query: 137 -------LKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRV 189
                  +K +     +     I   +    + L+   +   + +  GF G G       
Sbjct: 87  ADVETLIVKARMGMADENIWTLIRKDHSQFMVCLSVKALRDASGQLKGFLGIG--KDVTA 144

Query: 190 DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH 249
             +  A  + L+     L E        E+      + ++     + K+K  +   +   
Sbjct: 145 QQETEAALRCLNANLEQLVE--------ERTSQLNTAIETAEIANQAKSKFIANMSHEFR 196

Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
                      LL  +    P+Q+    +++   + +     +      S        + 
Sbjct: 197 TPLNAIMGFSQLLLRDRRITPDQQ--SRLDVIYRSGEHLLSLVNEVITLSKIEDGVLTYE 254

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
                         E          +     +    P F+          +     L  L
Sbjct: 255 PKDVNLYHLCEGVKELFSLQASSKDIQLQLRIAPDVPRFIR----TDAQKLRQI--LINL 308

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
           L               +             +     +    +    +P
Sbjct: 309 LGNALKYTKRGSVECRVQWRPPRTETLPHHIEFSIQDTGPGIPQHLLP 356


>gi|160934993|ref|ZP_02082379.1| hypothetical protein CLOLEP_03869 [Clostridium leptum DSM 753]
 gi|156866446|gb|EDO59818.1| hypothetical protein CLOLEP_03869 [Clostridium leptum DSM 753]
          Length = 581

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 76/398 (19%), Positives = 169/398 (42%), Gaps = 29/398 (7%)

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
           +P    N+  +         +         ++  +  QL ++L+   DG+  +++   IL
Sbjct: 211 VPEHYPNEIGQLAQSFNRMADQTQ--KAFSELTEQGHQLEAVLQGMDDGVLAVDQYDNIL 268

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
             N  V  L       I  K     +       +   L           + K    S  E
Sbjct: 269 LFNERVKALLQNSGLKIGEKLDGSIVLSQLAGYLREALE------TDSVVRKEIKLSNPE 322

Query: 536 EKLLSLRIIIKKLPFS-SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
            +++++         +     L + D++E ++ +                +S+F+A V+H
Sbjct: 323 -RIMTVYAAPLNAEDAKDGGLLVLSDVTEVRKLQ--------------QLRSEFVANVTH 367

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           E++TPLT+I GF E++K+          + +  +        +  +++D+L +S+IE+ K
Sbjct: 368 ELKTPLTSIRGFIELLKSGDRDEETRQYFYDVLDI---EAERLHHLIDDMLVLSQIENAK 424

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714
            ++   P +L++ +   +   +  A +  I++R   A     + +    ++Q+  N++ N
Sbjct: 425 DDVQTVPCNLNQEIETVLRRAKPIAEKNGIVLRLE-AEEAFLVASSPTRLQQLFGNLVEN 483

Query: 715 AIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           AI +    G++ ++     N  V+++V+DTG+G+    L +  + F ++ +S+     GT
Sbjct: 484 AIKYNKPQGRVTVTLQRQRN-MVLVKVKDTGIGIPQEHLPRLFERFYRVDSSRSREIGGT 542

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
           GLGL + K +     G   + S   +G++  +  PL +
Sbjct: 543 GLGLSIVKHLAGLYHGDVSVESVVGEGSVFTVRLPLLE 580


>gi|222056592|ref|YP_002538954.1| multi-sensor signal transduction histidine kinase [Geobacter sp.
            FRC-32]
 gi|221565881|gb|ACM21853.1| multi-sensor signal transduction histidine kinase [Geobacter sp.
            FRC-32]
          Length = 1150

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 95/807 (11%), Positives = 220/807 (27%), Gaps = 123/807 (15%)

Query: 90   DAHGYLKEISEELPKTIGNYAFKMIG--MRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
            +    ++ +S    K  G    +  G    L  +     +D   H  +L   +       
Sbjct: 380  NPDKSVRYVSGNCLKLTGYTEEEFHGNPRFLEKIVHPEDLDAWLHHCELPDEEGCGRSFD 439

Query: 148  TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                 +        +     + + +      R                           +
Sbjct: 440  IRIITKNGETR-WFNHVCHTVVASDGSRIAIR--ASFRDVTHRIILEQRLNDQRVFSESI 496

Query: 208  HEIKKGHSSVEKEKYDIFSQQSP----PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
             +       V    + + +                  +SL     + D         L  
Sbjct: 497  VDSILTPVFVIDADHKVIAWNRAMVELTGKAAADVLGTSLQWQPFYGDQRPTLSDLVLDG 556

Query: 264  SEES----------------SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
                                S+  ++ F   N  +         + ++  +    +    
Sbjct: 557  LNGDIERCYQHCFKDPFVKKSIRCEQWFEMPNGEKRYLILDAAPIFSD-GKKVAVVETIY 615

Query: 308  HPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
              +     ++   L  E +++      +    G++ Y N  F  ++ Y   + +     +
Sbjct: 616  DITERKTAEDSLRLFSEAINQSASSIIITDLEGSIQYVNRKFCEISGYSKEEILGRKPPV 675

Query: 367  STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
                  P+         V    +              +     +   T       +    
Sbjct: 676  ----LDPEQQSPQLYHQVWQTLTAGDAWQVQL---MSRKKDGTAFWQTVTVMPVTDPDGT 728

Query: 427  NMPQNGIEPEDVDTRINKRKMEIEV-------MQLCSIL--------------EATSDGI 465
                   E +  + R N+R +  +         +L ++               +   D I
Sbjct: 729  ITNLVIAEEDITELRNNERALRKQQAELVVKHEELRNLFRQVEQGKREWEKTMDCIDDMI 788

Query: 466  AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
             +++ +  +   N++  +  G          +T  +    P +             +   
Sbjct: 789  ILVDGQDHVRRCNKSFMEFCGIS--------YTGLISSKWPDLCASLGFTFDRDSRKIEF 840

Query: 526  EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS---------HAKK 576
                             +       +    +T+HD+++ K    +L          H + 
Sbjct: 841  HHEPTNR-------WFDLSSYPYGDADGAVITLHDLTQIKLVSQELFRTYEDLKTTHKQL 893

Query: 577  IAEKESSHKSDFLARVSHEIRTPLTAIIG-------FSEVIK-----------NQRFGPL 618
            +  ++ +      A V+HEI  P+  I         + E ++           +     +
Sbjct: 894  LQNEKMASLGQLAAGVAHEINNPIGFISSNLGTMGKYLERLQGIIAAQSAAINDTAPAEV 953

Query: 619  GNP---------------RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
                                    +        V  IV +L   S+I++ +       + 
Sbjct: 954  RTEIAELSARCKLDYILNDARSLLSESTEGAERVKHIVQNLKSFSRIDNAESKY----MD 1009

Query: 664  LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
            L E +   I +       K + +   +   +P++    + + Q+ LN+L NA H     G
Sbjct: 1010 LHECLESTIMVAWNELKYK-VTLVRDY-GELPQVKCFPQQLNQVFLNLLINAAHAIKERG 1067

Query: 724  QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
            +I I+T         + + DTG G+    + K   PF          G+GTGLGL ++  
Sbjct: 1068 EIRIATWCEDK-TACIAISDTGCGIPPEVIGKIFDPFFTTK----EVGKGTGLGLSISFD 1122

Query: 784  MVDANMGKFYIFSTPAKGTLIEIIFPL 810
            +++ + G   + S P +GT   I  P+
Sbjct: 1123 IINKHKGTIDVTSEPGQGTTFTIRIPV 1149



 Score = 88.5 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/334 (9%), Positives = 89/334 (26%), Gaps = 26/334 (7%)

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
                 +                     +   +F  +  +         +  E       
Sbjct: 311 RLTAHVKKLSAKRGEGRFIHIDTRDELGSLAAAFNEMILQMDEKQELLHENRELYKILAE 370

Query: 327 DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
               +        ++ Y + + L LT Y   +       L  ++    L          L
Sbjct: 371 FTSELAILFNPDKSVRYVSGNCLKLTGYTEEEFHGNPRFLEKIVHPEDLD-------AWL 423

Query: 387 YRSDRTCIAASARLHTIQW--NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
           +  +        R   I+       +     +           +       +     I +
Sbjct: 424 HHCELPDEEGCGRSFDIRIITKNGETRWFNHVCHTVVASDGSRIAIRASFRDVTHRIILE 483

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF-LEQ 503
           +++  + +   SI+++    + +I+ +  +++ NRA+ +L G    D+L           
Sbjct: 484 QRLNDQRVFSESIVDSILTPVFVIDADHKVIAWNRAMVELTGKAAADVLGTSLQWQPFYG 543

Query: 504 NTPSVMNHYLTEILSLDLRQTLEK-------------ITLGSTKEEKLLSLRIIIKKLPF 550
           +    ++  + + L+ D+ +  +                       +   L +    +  
Sbjct: 544 DQRPTLSDLVLDGLNGDIERCYQHCFKDPFVKKSIRCEQWFEMPNGEKRYLILDAAPIFS 603

Query: 551 SSCYSLTMH---DISEWKQEKNKLSHAKKIAEKE 581
                  +    DI+E K  ++ L    +   + 
Sbjct: 604 DGKKVAVVETIYDITERKTAEDSLRLFSEAINQS 637



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 14/140 (10%), Positives = 44/140 (31%), Gaps = 7/140 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP--NNHIGDLLKRQNTWYGK 146
            D  G ++ ++ +  +  G    +++G +   V D     P   + +   L   + W  +
Sbjct: 644 TDLEGSIQYVNRKFCEISGYSKEEILGRKPP-VLDPEQQSPQLYHQVWQTLTAGDAWQVQ 702

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                 +GT  +  + +  +P+   +   +               +     ++   +   
Sbjct: 703 LMSRKKDGTAFWQTVTV--MPVTDPDGTITNL--VIAEEDITELRNNERALRKQQAELVV 758

Query: 207 LHEIKKGHSSVEKEKYDIFS 226
            HE  +      ++    + 
Sbjct: 759 KHEELRNLFRQVEQGKREWE 778



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/333 (7%), Positives = 76/333 (22%), Gaps = 52/333 (15%)

Query: 68  LDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI 127
           L+ +  F    +   +   + IDA   +   +  + +  G  A  ++G  L       + 
Sbjct: 486 LNDQRVFSESIVDSILTPVFVIDADHKVIAWNRAMVELTGKAAADVLGTSLQ--WQPFYG 543

Query: 128 DPNNHIGDLLKRQ--------------NTWYGKTTL---WPIEGTNLYVPIDLAALPIYS 170
           D    + DL+                 + +  K+     W          + L A PI+S
Sbjct: 544 DQRPTLSDLVLDGLNGDIERCYQHCFKDPFVKKSIRCEQWFEMPNGEKRYLILDAAPIFS 603

Query: 171 RNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP 230
             ++ +       ++            +   +  +          +  +      +++  
Sbjct: 604 DGKKVA---VVETIYDITERKTAEDSLRLFSEAINQSA--SSIIITDLEGSIQYVNRKFC 658

Query: 231 PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT--SEESSLPEQEDFHTINLNQYTKKQY 288
                 K ++          +       + +    +   +   Q      +   + +   
Sbjct: 659 EISGYSKEEILGRKPPVLDPEQQSPQLYHQVWQTLTAGDAWQVQLMSRKKDGTAFWQTVT 718

Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN-----------LTPETVDKCPIP----- 332
              + +        +      +     +                      +         
Sbjct: 719 VMPVTDPDGTITNLVIAEEDITELRNNERALRKQQAELVVKHEELRNLFRQVEQGKREWE 778

Query: 333 ----------FFVYSHGNLFYANPSFLLLTKYK 355
                       V    ++   N SF+      
Sbjct: 779 KTMDCIDDMIILVDGQDHVRRCNKSFMEFCGIS 811


>gi|303246551|ref|ZP_07332830.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           fructosovorans JJ]
 gi|302492261|gb|EFL52136.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           fructosovorans JJ]
          Length = 560

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 94/549 (17%), Positives = 182/549 (33%), Gaps = 65/549 (11%)

Query: 318 GENLTPETVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
                   +D  P  FF      L  +AN +F  L                   ++ +  
Sbjct: 23  DPAFVGALLDASPDLFFYKDASFLYRFANRAFCELFGLTLEAVAGQTDFTLFEKESAERH 82

Query: 377 DNNAIKPVMLYR---------SDRTCIAASARLHTIQWNRENSLAMTFIP--------FE 419
               +  +   R              +        ++        +             E
Sbjct: 83  RKADLTVMRTGRFGAFEYEVVGGGRSVWLEVFKTPVRDASGGIQGIFCSARNITTHKRLE 142

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ-----------LCS---ILEATSDGI 465
            A++      +        D R    ++  +  +           L +   ILE +  GI
Sbjct: 143 VASRNARLELEKDAATRAEDLRRVNEELRRQAAERGKAEKALEESLRAVNLILENSPIGI 202

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS-LDLRQT 524
           A++  + I+   N    +LF  P   +  +    F           +  +    L   + 
Sbjct: 203 AVV-ADRIVQRANPTFHELFAMPPGTVAGRSTADFYP--DREAYEAFGRDFYPVLGRGRR 259

Query: 525 LEKITLGSTKEEKLLSLRII---IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE 581
           ++ +      +      RII   +      +     M D++E +  +             
Sbjct: 260 VDTVRPMRRADGTEFWCRIIGQVLFPDRPQAGSIWLMEDVTERRLAEE-------ATLAA 312

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
              K +F   +SHE+RTPL  I+G +E++                   +  S   + +++
Sbjct: 313 ERLKREFADNMSHEVRTPLNGILGMAELLLATEL----TDEQRGLVATLKESAGNLTELL 368

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILAD 700
             +LD S++++        P +++  +  A++     A +K + +        P  ++ D
Sbjct: 369 ESILDFSRLDADSEATRNTPFNINNIIQGAVNSFGSSALQKGLSLTWRIDPETPDLVVGD 428

Query: 701 LRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNE----------EVILRVRDTGVGMT 749
              ++++   +LSNAI FT  GG ++ +S      E           V   VRDTG+G+ 
Sbjct: 429 GAGLRRVLAALLSNAIKFTVQGGVEVAVSVGADCREAVPAATNGVVMVSFAVRDTGIGLP 488

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             +LE   +PF Q   S      G GLGL +A+ +  +  G   + S P  G++     P
Sbjct: 489 VDQLETVFEPFRQADGSMTRHYGGAGLGLAIARKIATSMGGDLTVESRPGSGSVFCFTAP 548

Query: 810 LYDTSHPHD 818
               S P D
Sbjct: 549 F---SLPRD 554



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 29/393 (7%), Positives = 82/393 (20%), Gaps = 44/393 (11%)

Query: 79  IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK 138
                 F +  DA    +  +    +  G     + G    D +         H    L 
Sbjct: 32  DASPDLFFYK-DASFLYRFANRAFCELFGLTLEAVAGQT--DFTLFEKESAERHRKADLT 88

Query: 139 RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
              T       + + G    V +++   P+   +    G   F                +
Sbjct: 89  VMRTGRFGAFEYEVVGGGRSVWLEVFKTPVRDASGGIQGI--FCSARNITTHKRLEVASR 146

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
               +       +        E+    + +       ++  + ++     +    +    
Sbjct: 147 NARLELEKDAATRAEDLRRVNEELRRQAAERGKAEKALEESLRAVNLILENSPIGIAVVA 206

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
             ++     +  E        +   +   ++   +       ++                
Sbjct: 207 DRIVQRANPTFHELFAMPPGTVAGRSTADFYPDREAYEAFGRDFYPVLGRGRRVDTVRPM 266

Query: 319 ENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
                                        +  +                           
Sbjct: 267 RRADGTEF---------------------WCRIIG-----------------QVLFPDRP 288

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
            A    ++       +A  A L   +  RE +  M+       N                
Sbjct: 289 QAGSIWLMEDVTERRLAEEATLAAERLKREFADNMSHEVRTPLNGILGMAELLLATELTD 348

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471
           + R     ++     L  +LE+  D  + ++ +
Sbjct: 349 EQRGLVATLKESAGNLTELLESILD-FSRLDAD 380


>gi|317050262|ref|YP_004111378.1| ATPase ATP-binding domain-containing protein [Desulfurispirillum
           indicum S5]
 gi|316945346|gb|ADU64822.1| ATP-binding region ATPase domain protein [Desulfurispirillum
           indicum S5]
          Length = 777

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 82/299 (27%), Positives = 145/299 (48%), Gaps = 8/299 (2%)

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM-----HDISEWKQEKNKLSHAKKI 577
           +++ ++        +   L   ++    +      +       +   +  + +L  A+  
Sbjct: 215 RSMARLIHAIRHTGRSGDLSTQVQFEGNAEGEMRQIALSFNQMLKRLRLAQQELEQARTA 274

Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
           AE  S  K+ FLA +SHE+RTPL AIIG+SE +  +           +    I+++G  +
Sbjct: 275 AEAASEAKAQFLANMSHELRTPLNAIIGYSE-MTQEDIAAGNTQSVQQDLEKINKAGLHL 333

Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697
           L IVND+LDISKIE+GKM+L  E   + + + + ++++     ++    +   + +I  +
Sbjct: 334 LSIVNDILDISKIEAGKMDLFLEDFDITQLLHDVVAIMTPLMEKQGNQFQLVLSPDIGMM 393

Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757
            AD   V+QI +N+LSNA  FT  G +I +       E +++ V DTG+GM   ++++  
Sbjct: 394 HADQTKVRQILINLLSNATKFTHQG-EITVEVQ-NHGEHIVVSVHDTGIGMDPEQVDRLF 451

Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           K F Q   S   +  GTGLGL +++       G   + STP KG+   +  P      P
Sbjct: 452 KAFTQADASTTRKYGGTGLGLSISQHFCHMMGGSIRVESTPGKGSHFTVQLPRKTLRPP 510


>gi|289582943|ref|YP_003481409.1| multi-sensor signal transduction histidine kinase [Natrialba
           magadii ATCC 43099]
 gi|289532496|gb|ADD06847.1| multi-sensor signal transduction histidine kinase [Natrialba
           magadii ATCC 43099]
          Length = 838

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 98/633 (15%), Positives = 218/633 (34%), Gaps = 43/633 (6%)

Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA 248
              +P  L +                ++       I + +          + S+ T    
Sbjct: 216 ESTEPVQLEELAADDRPPSAGEPVSDAATSGMAVRIGTSEHTDGVAEAMGEASTSTSTST 275

Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQ------YTKKQYFGTLQNNSKESFEY 302
             +           TSE S   E +    I+ +        T +  F         +   
Sbjct: 276 STESPQGEGSETSETSETSETSETDVAREIDGSWGVLTVHTTAECEFTDADATFLRTVAN 335

Query: 303 LSHR--NHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDD 359
           +     +  +     DE  +     +D  P+    V + G   +AN     +T  + +  
Sbjct: 336 ILASAIDRTTAQRRRDEATSWADSVLDAAPVGITLVDTDGQTVFANRRAEEITG-RPLSK 394

Query: 360 IEIAGGLSTLL-DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
           ++             +  D  +   +   R   T       + +I+      + ++    
Sbjct: 395 LQTFTHNDERWGLVDEDGDPISFTDLPFTRVIETEEPVRNEVVSIRRPSGERVWLSIHCS 454

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
              +   +         +  + R  + ++E        IL    + I   + +      N
Sbjct: 455 PLYDSIGDLDGVIYAFRDVTERRELESRLEE-------ILGRVDEAICAFDEDFRYTHAN 507

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNT-PSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
               +L     E++L +       ++    V+ +   E +      + E     +     
Sbjct: 508 DRAEELLQRSREELLGEQLWEAFPESANEDVVRNSFQEAMDSQEPTSYEHYYEPANA--- 564

Query: 538 LLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
              L + I      +  S+   D+++ ++        ++  E+ +     F    SH+++
Sbjct: 565 --WLEVTIYP--SETGSSVYFRDVTDRRE-------YQRRLEESNERLEQFAYAASHDLQ 613

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
            PL  +  + + +   R+    +    E+ +Y       +  ++N LL+ S+IE+     
Sbjct: 614 EPLRMVSSYLD-LLETRYADELDEDAQEFIDYAVDGAERMRQMINGLLEFSRIETQGEP- 671

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
            FEPV LDE + + +  +++   E    I    A  +PR+  D   ++Q+  N+LSNAI 
Sbjct: 672 -FEPVDLDEVLEDVMRDLRVKIVENSADIS---AAELPRVAGDGNQLRQVFQNLLSNAIV 727

Query: 718 FT-PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
           ++     +I I   H +  E ++ V D GVG+   + E+    F +  +       G+G+
Sbjct: 728 YSGEEPPEIDIQ-AHDTGSEWVISVSDNGVGIDPDDTEQIFGLFERRHSGG--EHTGSGI 784

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GL L + +++ + G+ ++ S P +G       P
Sbjct: 785 GLALCERIIERHGGEIWVDSEPGEGATFSFTLP 817



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/380 (9%), Positives = 94/380 (24%), Gaps = 36/380 (9%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV---SDILHIDP----NNHIGDLLKRQN 141
           +D  G     +    +  G    K+      D          DP    +     +++ + 
Sbjct: 371 VDTDGQTVFANRRAEEITGRPLSKLQTFTHNDERWGLVDEDGDPISFTDLPFTRVIETEE 430

Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
               +        +   V + +   P+Y    +  G     +++  R   + R L  RL+
Sbjct: 431 PVRNEVVSIRRP-SGERVWLSIHCSPLYDSIGDLDG-----VIYAFRDVTERRELESRLE 484

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
           +    + E          E +           L  +++   L E           E    
Sbjct: 485 EILGRVDEAICAF----DEDFRYTHANDRAEELLQRSREELLGEQLWEAFPESANEDVVR 540

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
            + +E+   ++   +                 + +  S  +    +        +E    
Sbjct: 541 NSFQEAMDSQEPTSYEHYYEPANAWLEVTIYPSETGSSVYFRDVTDRREYQRRLEESNER 600

Query: 322 TPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
             +           +          S+L L + +  D+++         DA +  D    
Sbjct: 601 LEQFAYAAS-----HDLQEPLRMVSSYLDLLETRYADELDE--------DAQEFIDYAVD 647

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
               +       I        I+   E    +      +       +       +     
Sbjct: 648 GAERMR----QMINGLLEFSRIETQGEPFEPVDLDEVLEDVMRDLRVKIVENSADISAAE 703

Query: 442 INKRKMEIEVMQLCSILEAT 461
           + +     +  QL  + +  
Sbjct: 704 LPRVA--GDGNQLRQVFQNL 721



 Score = 43.5 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 24/241 (9%), Positives = 59/241 (24%), Gaps = 15/241 (6%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN---NHIGDLLKRQNTWYGK 146
           D        ++   + +     +++G +L + +     + +   N   + +  Q     +
Sbjct: 498 DEDFRYTHANDRAEELLQRSREELLGEQLWE-AFPESANEDVVRNSFQEAMDSQEPTSYE 556

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP-RALGKRLDKKFS 205
               P         +++   P  S       FR    V   R          +RL++   
Sbjct: 557 HYYEPAN-----AWLEVTIYP--SETGSSVYFR---DVTDRREYQRRLEESNERLEQFAY 606

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
                 +    +     D+   +          +        A +   +          E
Sbjct: 607 AASHDLQEPLRMVSSYLDLLETRYADELDEDAQEFIDYAVDGAERMRQMINGLLEFSRIE 666

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
               P +       L    +      ++N++  S   L                 L+   
Sbjct: 667 TQGEPFEPVDLDEVLEDVMRDLRVKIVENSADISAAELPRVAGDGNQLRQVFQNLLSNAI 726

Query: 326 V 326
           V
Sbjct: 727 V 727


>gi|167913353|ref|ZP_02500444.1| two-component system sensor protein [Burkholderia pseudomallei 112]
          Length = 927

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 126/677 (18%), Positives = 232/677 (34%), Gaps = 59/677 (8%)

Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH 233
           +F   +G+ ++H  +      A+G     +          + ++ + +  +   QSP P 
Sbjct: 24  QFDAHQGYAVLHTPQGAPAALAVGIPAPGRS---ASAFAPYLALLETQLLMGDGQSPLPD 80

Query: 234 LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293
            R++    S    Y       + +         S+                 +     + 
Sbjct: 81  DRVEGYSFSPDGTYLSLLWSREDQAPEAFIESHSASGL---IGDAMRGIRYLRDASTIVP 137

Query: 294 NNSKESFEYLSHRNHP--------SLSAYFDEGENLTPETVDKCPIPFF----------- 334
             +     +L     P         +    D    L    V   P+  F           
Sbjct: 138 LRADRRTVWLPPHPDPLTGKPMIRIVQPAIDATGKLFAIYVRSLPLDMFYSNLNDAPAGS 197

Query: 335 ----VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390
               V   GN+   + +        +   + I       L           +  M   SD
Sbjct: 198 TLTIVDRKGNVILGSSNQHGGDGGATASALGI-----RSLGDGFGGLVERYQDGMFVTSD 252

Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR------INK 444
           +        +H   W    + A+              +    +     D +         
Sbjct: 253 QLPGTDWVLVHAYSWK-TIAAALALRFSLVTGLVAGIIVMLWLFAIQFDRKGLIPNYRRA 311

Query: 445 RKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
           +++    +   +IL     G+ +++  +G +L  N A+ +L     ++ L          
Sbjct: 312 QRLLESEVLNRTILRTAPVGLGLLSAQDGSVLLQNNAMLELSARTSDEPLPIRLWEAYRH 371

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                 +               +            L   ++  +   ++    T+ DIS 
Sbjct: 372 AVGRSSDE-------DGALLQHDLAIEREGANPVYLQANVVAARYRGANVLLCTLLDISL 424

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            K+ + KL  A+  A++ +  KS FLA +SHEIRTPL AIIG  E+++        + + 
Sbjct: 425 RKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPL----SEQQ 480

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            E  + ++   N +L I+ND+LD+SK+ESG+M L   P  +   + E +      A  K 
Sbjct: 481 SERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAYAPLAESKG 540

Query: 684 ILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIST----THTSNEEVI 738
           + + +S    + R    D   ++Q+  N++ NAI FT  G  I I             + 
Sbjct: 541 LALLSSIGEGVARHYTGDPTRIRQVLSNLIGNAIKFTERG-HISIDVHRAKAARDGSAIE 599

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           + V DTG+G+    +      + Q   S   R  G+GLGLPL + +V    G   I S P
Sbjct: 600 IWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLP 659

Query: 799 AKGTLIEIIFPLYDTSH 815
             GT + +  PL +  H
Sbjct: 660 DFGTTVTVALPLREARH 676


>gi|167898529|ref|ZP_02485930.1| sensory box histidine kinase [Burkholderia pseudomallei 7894]
          Length = 709

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 98/632 (15%), Positives = 209/632 (33%), Gaps = 26/632 (4%)

Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE 245
             R   D  A   + D          +     ++ +     +            + S   
Sbjct: 79  EIRKQFDALATLVQGDAVQQQRLATLRMLLEKKQHELAATIELRKTEGFDAAQAIVSSDA 138

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
                D           T ++     ++                G L      SF Y+  
Sbjct: 139 GKIFMDRARVMVNEMEATVQQQLRTLRDRARATRDIAIGVGLASGLLTLAVCVSFGYVMR 198

Query: 306 RNHPSLSAYFD---EGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIE 361
           R     +A      E   L   T+             G + + N     +T   +   + 
Sbjct: 199 RLLLVEAAAAHDLFEQRELLHVTLASIGDGVIATDVGGRITFFNRVAEEMTALCADAVVG 258

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                  L+     +      P  +    R   +  A    +  +    L +        
Sbjct: 259 QPIE-RVLMFRHATTQRVIDNPARVAVERRRTASLPAHTRFVGRSGGE-LPVDGNAAPTF 316

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
           +   + +    I  +  +    + +  +        +EA    + ++ R+G I+  N   
Sbjct: 317 DANGKLVGAVLIVRDVSERERAEERFRLA-------VEAAPTAMIMVGRDGRIVLVNSQA 369

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLL 539
            KLFGY   D++     + + +   +    +          + +   +   G  ++    
Sbjct: 370 EKLFGYARGDMIGHGIDMLVPERFRAGHWAHRDAFFGNPDARPMGEGRDLFGLRRDGSEF 429

Query: 540 SLRIIIKKLPFSSCYSLT--MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
            + I +  +  S    +   + DI+  K+ + +L    +   + +     F    SH+++
Sbjct: 430 PVEIGLNPITTSEGAFVLCSIADITARKRAELELRRRSEELARSNQDLEQFAYVASHDLQ 489

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
            PL A+ G  ++++ +  G L + R  E+  +       +  +++DLL  S++  G++  
Sbjct: 490 EPLRAVAGPLQLLQRRYQGQL-DARADEFIGHAVDGATRMQSLIDDLLSYSRV--GRLED 546

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
              PV  +  + EA+  +     E    +       +P +      +  +  N++ NAI 
Sbjct: 547 ARRPVDCEHVLDEALRNLSAAIRESGAQVTHD---PLPTVHGIEAQLVLLFQNLIGNAIK 603

Query: 718 FTPSGGQIIIST-THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
           F        I    HT ++  +LRVRD G+G+     E+    F ++    +    GTGL
Sbjct: 604 FRGKDRVARIHLEAHTRDDAWLLRVRDNGIGIDPQYFERIFLIFQRLH--TRREYPGTGL 661

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           GL L K +V+ + G+ ++ S P +GT      
Sbjct: 662 GLALCKRIVEHHGGRIFVESEPGQGTTFSFTL 693



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/353 (9%), Positives = 76/353 (21%), Gaps = 19/353 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL----KRQNTWY 144
           +   G +  ++ +  K  G     MIG  +  +        +    D        +    
Sbjct: 356 VGRDGRIVLVNSQAEKLFGYARGDMIGHGIDMLVPERFRAGHWAHRDAFFGNPDARPMGE 415

Query: 145 GKTTL-WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
           G+       +G+    P+++   PI +    F        +             +R  ++
Sbjct: 416 GRDLFGLRRDGS--EFPVEIGLNPITTSEGAFV----LCSIADITARKRAELELRRRSEE 469

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
            +  ++  +  + V         +    P   ++ +     +  A +      +    + 
Sbjct: 470 LARSNQDLEQFAYVASHDLQEPLRAVAGPLQLLQRRYQGQLDARADEFIGHAVDGATRMQ 529

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYF---GTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
           S    L        +   +            L+N S    E  +   H  L         
Sbjct: 530 SLIDDLLSYSRVGRLEDARRPVDCEHVLDEALRNLSAAIRESGAQVTHDPLPTVHGIEAQ 589

Query: 321 LTPETVDKCPIPFFVYSHGN-----LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
           L     +                  L         L + +             +    + 
Sbjct: 590 LVLLFQNLIGNAIKFRGKDRVARIHLEAHTRDDAWLLRVRDNGIGIDPQYFERIFLIFQR 649

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
                  P                   I    E     TF          E  
Sbjct: 650 LHTRREYPGTGLGLALCKRIVEHHGGRIFVESEPGQGTTFSFTLSRPGADETR 702



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/250 (9%), Positives = 56/250 (22%), Gaps = 13/250 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI----GDLLKRQNTWY 144
            D  G +   +    +     A  ++G  +  V    H      I       ++R+ T  
Sbjct: 232 TDVGGRITFFNRVAEEMTALCADAVVGQPIERVLMFRHATTQRVIDNPARVAVERRRTAS 291

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNR---VDNDPRALGKRLD 201
                  +  +   +P+D  A P +  N +  G     IV          +   L     
Sbjct: 292 LPAHTRFVGRSGGELPVDGNAAPTFDANGKLVGA--VLIVRDVSERERAEERFRLAVEAA 349

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
                +         V  +   +F            + +        H          P 
Sbjct: 350 PTAMIMVGRDGRIVLVNSQAEKLFGYARGDMIGHGIDMLVPERFRAGHWAHRDAFFGNPD 409

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
                            + +++  +     +  +       L      +     +     
Sbjct: 410 ARPMGEGR--DLFGLRRDGSEFPVEIGLNPITTSEGAF--VLCSIADITARKRAELELRR 465

Query: 322 TPETVDKCPI 331
             E + +   
Sbjct: 466 RSEELARSNQ 475


>gi|328866981|gb|EGG15364.1| histidine kinase [Dictyostelium fasciculatum]
          Length = 1667

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 87/373 (23%), Positives = 164/373 (43%), Gaps = 20/373 (5%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           ++ E +  ++ S+ + +++ + +  + G I   N A   +F   ++DI           +
Sbjct: 599 KETERKEERIQSLFKISNEALVLH-KGGYITDANPAFENMFQIKLKDI-------LYPPS 650

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM--HDIS 562
                   L +    D++    +         +   + +   K  ++          DI+
Sbjct: 651 GVWEFLPSLEKFEGRDIKLGPVEEMEAVDSSGRTFDVEVRTNKANYAGKPVDVFSIIDIT 710

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ-RFGPLGNP 621
             K+   +   A + AE  +  K  FL  +SHE++TP+  I G  EV++   +   +   
Sbjct: 711 GRKKL-IEADVALRKAEAATEAKVVFLTTISHELKTPIQGIYGLVEVLEQNIQEENVDIN 769

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
           +  E    I  S N +  +V D+LD SKIE+GKM+L  +  S+ + + E  +++   A +
Sbjct: 770 QSQELLELIRSSANYLFTLVVDILDYSKIEAGKMDLVIKDFSMLKLIEETSNIMSKSAAQ 829

Query: 682 KRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----- 735
           K + +      N+P +L  D   +++I LN +SNAI FT  G QI IS +  + +     
Sbjct: 830 KGLELVFYVDYNMPILLEGDANRIRRILLNFISNAIKFTEEG-QIKISVSVIATDLVHSE 888

Query: 736 -EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
             +   + D+G+G+   +  K    F QI +S   + +GTGLGL ++K +     G    
Sbjct: 889 YTIKFDIEDSGIGIKPEDQSKLFNAFTQIDSSNSRKYQGTGLGLIISKKLAQMMGGDVGY 948

Query: 795 FSTPAKGTLIEII 807
            S   KG+     
Sbjct: 949 RSIYGKGSTFTFH 961


>gi|322417553|ref|YP_004196776.1| multi-sensor signal transduction histidine kinase [Geobacter sp.
           M18]
 gi|320123940|gb|ADW11500.1| multi-sensor signal transduction histidine kinase [Geobacter sp.
           M18]
          Length = 762

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 99/582 (17%), Positives = 208/582 (35%), Gaps = 33/582 (5%)

Query: 236 MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN 295
              +V +       +   +      +  ++            +  +     +    L+  
Sbjct: 193 AAGEVLNNRPSLPAELQEVAGRDVEVTITQRGLGIASSLPRPLRDSSTLSPRIVDVLERG 252

Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYK 355
                E L      +     D   N   E V    +           +     L      
Sbjct: 253 EVYRGEALIGSR--NYETVIDPILNSRGEFVGSISVAVA---TERFKHTKRENLQNILAS 307

Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
           +   I  + GL   L +  L+           + +   +               + +   
Sbjct: 308 AFVGILCSFGL-AFLASRHLTGPLRQLAASARKIEEGDLNQRVEGSQDDEVGMLASSFNN 366

Query: 416 IPFEKANQFPENMPQNGIEPEDVDT-----RINKRKMEIEVMQLCSILEATSDGIAIINR 470
           +      +      + G   E  +            + +E+ +L ++L + ++G+ + + 
Sbjct: 367 MVQALKERDSIINKKTGDLQELNEQLEGMVDERTSALAMEMGRLEAVLTSLAEGVVVTDL 426

Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530
              ++  N A  +LF      ++ +P                L  I  L   +       
Sbjct: 427 NNRVVLFNPAAQQLFEMVPHRVIGQPIEQV---CELVGFTPLLERIRELGQPERGGGSKE 483

Query: 531 GSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
             T + K L + +        +     L++ D++  +Q                  K++F
Sbjct: 484 ELTAKGKRLHVYLSPLSDEEGNFAGIVLSIRDVTVEQQV--------------DRMKTEF 529

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
           ++ VSHE++TPLT+I G  +++  +        R         R+   ++ +++++LDIS
Sbjct: 530 ISTVSHELKTPLTSIKGSLQLLLTRSKWLTDTERQ--LLTVCFRNTQRLIRLISEILDIS 587

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIA 708
            IESG M   F+PVS+ E    A+  ++ YA  + I I  +   ++P +  D   + Q+ 
Sbjct: 588 GIESGGMVFKFKPVSIGELTVYAVEEMKPYAMGRDITIVNTVGEHLPMVYGDSDRLIQVI 647

Query: 709 LNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
            N+LSNA+ F+P G  +++S        V++ V D G  +   + +K  K F QI   ++
Sbjct: 648 TNLLSNAVKFSPEGKVVMVSAE-QEGNYVVVSVGDKGRVIQWSDRDKLFKKFQQIECQER 706

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            +  GTGLGL + K +V+ + G+ +  +   +G       P+
Sbjct: 707 GKVGGTGLGLAICKEIVERHHGRIFYTAAQERGNTFSFTVPI 748



 Score = 40.8 bits (94), Expect = 0.98,   Method: Composition-based stats.
 Identities = 11/107 (10%), Positives = 33/107 (30%), Gaps = 6/107 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            D +  +   +    +       ++IG  +  V +++   P   +  + +      G  +
Sbjct: 424 TDLNNRVVLFNPAAQQLFEMVPHRVIGQPIEQVCELVGFTP--LLERIRELGQPERGGGS 481

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA 195
              +      + + L+  P+      F+G      +    V+     
Sbjct: 482 KEELTAKGKRLHVYLS--PLSDEEGNFAGI--VLSIRDVTVEQQVDR 524


>gi|53717169|ref|YP_105595.1| sensory box histidine kinase [Burkholderia mallei ATCC 23344]
 gi|167742919|ref|ZP_02415693.1| sensory box histidine kinase [Burkholderia pseudomallei 14]
 gi|167923067|ref|ZP_02510158.1| sensory box histidine kinase [Burkholderia pseudomallei BCC215]
 gi|52423139|gb|AAU46709.1| sensory box histidine kinase [Burkholderia mallei ATCC 23344]
          Length = 723

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 98/632 (15%), Positives = 209/632 (33%), Gaps = 26/632 (4%)

Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE 245
             R   D  A   + D          +     ++ +     +            + S   
Sbjct: 93  EIRKQFDALATLVQGDAVQQQRLATLRMLLEKKQHELAATIELRKTEGFDAAQAIVSSDA 152

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
                D           T ++     ++                G L      SF Y+  
Sbjct: 153 GKIFMDRARVMVNEMEATVQQQLRTLRDRARATRDIAIGVGLASGLLTLAVCVSFGYVMR 212

Query: 306 RNHPSLSAYFD---EGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIE 361
           R     +A      E   L   T+             G + + N     +T   +   + 
Sbjct: 213 RLLLVEAAAAHDLFEQRELLHVTLASIGDGVIATDVGGRITFFNRVAEEMTALCADAVVG 272

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                  L+     +      P  +    R   +  A    +  +    L +        
Sbjct: 273 QPIE-RVLMFRHATTQRVIDNPARVAVERRRTASLPAHTRFVGRSGGE-LPVDGNAAPTF 330

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
           +   + +    I  +  +    + +  +        +EA    + ++ R+G I+  N   
Sbjct: 331 DANGKLVGAVLIVRDVSERERAEERFRLA-------VEAAPTAMIMVGRDGRIVLVNSQA 383

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLL 539
            KLFGY   D++     + + +   +    +          + +   +   G  ++    
Sbjct: 384 EKLFGYARGDMIGHGIDMLVPERFRAGHWAHRDAFFGNPDARPMGEGRDLFGLRRDGSEF 443

Query: 540 SLRIIIKKLPFSSCYSLT--MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
            + I +  +  S    +   + DI+  K+ + +L    +   + +     F    SH+++
Sbjct: 444 PVEIGLNPITTSEGAFVLCSIADITARKRAELELRRRSEELARSNQDLEQFAYVASHDLQ 503

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
            PL A+ G  ++++ +  G L + R  E+  +       +  +++DLL  S++  G++  
Sbjct: 504 EPLRAVAGPLQLLQRRYQGQL-DARADEFIGHAVDGATRMQSLIDDLLSYSRV--GRLED 560

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
              PV  +  + EA+  +     E    +       +P +      +  +  N++ NAI 
Sbjct: 561 ARRPVDCEHVLDEALRNLSAAIRESGAQVTHD---PLPTVHGIEAQLVLLFQNLIGNAIK 617

Query: 718 FTPSGGQIIIST-THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
           F        I    HT ++  +LRVRD G+G+     E+    F ++    +    GTGL
Sbjct: 618 FRGKDRVARIHLEAHTRDDAWLLRVRDNGIGIDPQYFERIFLIFQRLH--TRREYPGTGL 675

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           GL L K +V+ + G+ ++ S P +GT      
Sbjct: 676 GLALCKRIVEHHGGRIFVESEPGQGTTFSFTL 707



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/353 (9%), Positives = 76/353 (21%), Gaps = 19/353 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL----KRQNTWY 144
           +   G +  ++ +  K  G     MIG  +  +        +    D        +    
Sbjct: 370 VGRDGRIVLVNSQAEKLFGYARGDMIGHGIDMLVPERFRAGHWAHRDAFFGNPDARPMGE 429

Query: 145 GKTTL-WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
           G+       +G+    P+++   PI +    F        +             +R  ++
Sbjct: 430 GRDLFGLRRDGS--EFPVEIGLNPITTSEGAFV----LCSIADITARKRAELELRRRSEE 483

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
            +  ++  +  + V         +    P   ++ +     +  A +      +    + 
Sbjct: 484 LARSNQDLEQFAYVASHDLQEPLRAVAGPLQLLQRRYQGQLDARADEFIGHAVDGATRMQ 543

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYF---GTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
           S    L        +   +            L+N S    E  +   H  L         
Sbjct: 544 SLIDDLLSYSRVGRLEDARRPVDCEHVLDEALRNLSAAIRESGAQVTHDPLPTVHGIEAQ 603

Query: 321 LTPETVDKCPIPFFVYSHGN-----LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
           L     +                  L         L + +             +    + 
Sbjct: 604 LVLLFQNLIGNAIKFRGKDRVARIHLEAHTRDDAWLLRVRDNGIGIDPQYFERIFLIFQR 663

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
                  P                   I    E     TF          E  
Sbjct: 664 LHTRREYPGTGLGLALCKRIVEHHGGRIFVESEPGQGTTFSFTLSRPGADETR 716



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/250 (9%), Positives = 56/250 (22%), Gaps = 13/250 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI----GDLLKRQNTWY 144
            D  G +   +    +     A  ++G  +  V    H      I       ++R+ T  
Sbjct: 246 TDVGGRITFFNRVAEEMTALCADAVVGQPIERVLMFRHATTQRVIDNPARVAVERRRTAS 305

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNR---VDNDPRALGKRLD 201
                  +  +   +P+D  A P +  N +  G     IV          +   L     
Sbjct: 306 LPAHTRFVGRSGGELPVDGNAAPTFDANGKLVGA--VLIVRDVSERERAEERFRLAVEAA 363

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
                +         V  +   +F            + +        H          P 
Sbjct: 364 PTAMIMVGRDGRIVLVNSQAEKLFGYARGDMIGHGIDMLVPERFRAGHWAHRDAFFGNPD 423

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
                            + +++  +     +  +       L      +     +     
Sbjct: 424 ARPMGEGR--DLFGLRRDGSEFPVEIGLNPITTSEGAF--VLCSIADITARKRAELELRR 479

Query: 322 TPETVDKCPI 331
             E + +   
Sbjct: 480 RSEELARSNQ 489


>gi|255523429|ref|ZP_05390398.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           carboxidivorans P7]
 gi|296184711|ref|ZP_06853122.1| PAS domain S-box domain-containing protein [Clostridium
           carboxidivorans P7]
 gi|255512887|gb|EET89158.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           carboxidivorans P7]
 gi|296050493|gb|EFG89916.1| PAS domain S-box domain-containing protein [Clostridium
           carboxidivorans P7]
          Length = 798

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 104/659 (15%), Positives = 226/659 (34%), Gaps = 60/659 (9%)

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244
            V +                 H+ +     S +      IF  +     ++    V   T
Sbjct: 136 RVIKEQKQELESIVENMFDGVHIFDRNYKCSILNNSGKKIFYNED---LMKNSENVLKCT 192

Query: 245 EYYAHKDDVLKTEKYP-LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303
            YY  + ++++ E  P     +   L             Y        + +      + +
Sbjct: 193 NYYDCEGNLIEEEDLPSRKAIKGERLKGYRLMCKKPDGVYYYDINSSPIYDKDGNIIKAI 252

Query: 304 SHRNHPSLSAYFDEGEN----LTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVD 358
              +  +     DE            ++       ++   G+    N +           
Sbjct: 253 FCSHDITEQVKKDELIRYQKEKLEAIIENISDALVIFDGNGDFTIVNKAARNYL------ 306

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN--------- 409
                       +    +     + V     D   I++           E          
Sbjct: 307 ----------FYNKVLNNVKEVCEQVECTDIDGNLISSENLPAERVLKGEKLSPCKIFMK 356

Query: 410 ----SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ--LCSILEATSD 463
                + +        N+  E +       +  +   ++  + I+     L  ++E    
Sbjct: 357 INNKRVNIELNGTPVYNKQGEFVAGIICFRDVTEKVKSEEDLLIKTQYGLLNRMVENLDL 416

Query: 464 GIAIIN-REGIILSTNRAVSK-LFGYPVE-----DILRKPFTVFLEQNTPSVMNHYLTEI 516
            +  ++  +  I   N+   K + G          +  K ++  +      ++  ++ +I
Sbjct: 417 PVITLSYPDLKITHINQKAYKFISGLKPGIKSISSLKGKNYSDIITNFNKYMLLKHIKDI 476

Query: 517 LSLDLRQTLEKITLGSTKEEKLLS-LRIIIKKLPFS-SCYSLTMHDISEWKQEKNKLSHA 574
           ++      L+ I L    EE  +  L   +  L    +   +   D+++  + + KL   
Sbjct: 477 VNKKETSYLKYIRLIVDGEEVFVKKLYQPVLGLNGELAQVVVIFMDVTQ--EIEAKLKME 534

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI---KNQRFGPLGNPRYIEYANYID 631
           K +          FL  +SHE++TPL  I   ++++      +       + I+   +I 
Sbjct: 535 KTLKMH-----EQFLTNISHELKTPLNVIFSSAQLLELYLKNKSVEENKEKIIKDTYFIR 589

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
           ++   ++ ++ +++D+SKIESG   L+    ++   V + +  V  Y   K + I     
Sbjct: 590 QNCYRLIKLIGNIIDLSKIESGFFKLNLSNENIVSVVEDIVQSVSEYVESKDLSIIFDTD 649

Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751
                I  D   ++++ LN++SNAI F+  G +I ++     NE V + V+D G+G+   
Sbjct: 650 VEEKIIACDPDKIERVVLNLISNAIKFSDPGDEIYVNIA-DKNETVEISVKDNGIGIDKN 708

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            L    + F Q+  S     EG+G+GL L K++V+ + GK    S   +G+  +I  PL
Sbjct: 709 HLNAIFERFNQVDKSFTRNAEGSGIGLCLVKSIVELHGGKISAESKLGEGSTFKIELPL 767



 Score = 57.7 bits (138), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 60/192 (31%), Gaps = 10/192 (5%)

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR----INKRKMEIEVMQLCSILEATSD 463
           E    ++ +P     +    +       E V  R      +R ++ +  +L SI+E   D
Sbjct: 95  EIYWDLSIVPVYTDEKIEYIIQTYVDVTERVLNRNIIEKQERVIKEQKQELESIVENMFD 154

Query: 464 GIAIINREGIILSTNRAVSKLF---GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520
           G+ I +R       N +  K+F               T + +     +    L    ++ 
Sbjct: 155 GVHIFDRNYKCSILNNSGKKIFYNEDLMKNSENVLKCTNYYDCEGNLIEEEDLPSRKAIK 214

Query: 521 LRQTLEKITLGSTKEE-KLLSLRIIIKKLPFSSCYSLTM--HDISEWKQEKNKLSHAKKI 577
             +      +    +      +          +        HDI+E  ++   + + K+ 
Sbjct: 215 GERLKGYRLMCKKPDGVYYYDINSSPIYDKDGNIIKAIFCSHDITEQVKKDELIRYQKEK 274

Query: 578 AEKESSHKSDFL 589
            E    + SD L
Sbjct: 275 LEAIIENISDAL 286


>gi|110803461|ref|YP_698636.1| sensory box histidine kinase [Clostridium perfringens SM101]
 gi|110683962|gb|ABG87332.1| sensory box histidine kinase [Clostridium perfringens SM101]
          Length = 787

 Score =  301 bits (771), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 94/388 (24%), Positives = 181/388 (46%), Gaps = 15/388 (3%)

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
           +       +  +    ++ +++E  +L  + E   D I  I+ EG I   N+AV  + GY
Sbjct: 375 LYYVLRINDITEEYKMEKNLKLEEQRLRGVTENIKDLIFTIDVEGKISYVNKAVIDVLGY 434

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
             E+++ K +   L   +   +    ++  + D   T++K+      ++ L+ L  I  +
Sbjct: 435 SEEELIGKNYYDLLLVESNLNIID--SKYFNEDKILTIDKV----RSKKGLVQLESISSR 488

Query: 548 LPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
           +  +      +     +I + ++ +  L +  +  ++    +S+F A +SHE+RTP+  I
Sbjct: 489 IKDNKNNTLGWVRVARNIEDVREIEI-LKNKFEEIKQYDKVRSEFFANLSHELRTPINII 547

Query: 604 IGFSEVIKNQRFGPLG-NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
               +++   +         Y +Y   + ++   +L +VN+L+DI+KI+SG + + F   
Sbjct: 548 YSCIQLLNTSKKNKANFVNLYDKYEKTLKQNCFRMLRLVNNLIDITKIDSGFIKMDFINY 607

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
            + +   +    V  Y   K I I          I  D   +++I LN+LSNAI FT  G
Sbjct: 608 DIIKLTEDITMSVIPYVESKNIDIIFDTNCEELEIRCDPDKIERIILNLLSNAIKFTEPG 667

Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
           G+I +S        V +RV+DTG+G+ ++  E     F Q   S     EG+G+GL L K
Sbjct: 668 GKIEVSI-LIDETWVDIRVKDTGIGIPSHMKEFIFGRFIQNDKSLNRNKEGSGIGLSLVK 726

Query: 783 AMVDANMGKFYI-FSTPAKGTLIEIIFP 809
           ++V+ + GK ++  S    G+   I+ P
Sbjct: 727 SLVELHEGKVFLRESNE-SGSEFSILLP 753



 Score = 45.0 bits (105), Expect = 0.052,   Method: Composition-based stats.
 Identities = 7/38 (18%), Positives = 17/38 (44%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS 122
             + ID  G +  +++ +   +G    ++IG    D+ 
Sbjct: 411 LIFTIDVEGKISYVNKAVIDVLGYSEEELIGKNYYDLL 448


>gi|67538252|ref|XP_662900.1| hypothetical protein AN5296.2 [Aspergillus nidulans FGSC A4]
 gi|238054329|sp|Q9P896|TCSA_EMENI RecName: Full=Two-component system protein A
 gi|40743266|gb|EAA62456.1| hypothetical protein AN5296.2 [Aspergillus nidulans FGSC A4]
 gi|259485266|tpe|CBF82150.1| TPA: Two-component system protein A (EC 2.7.13.3)
           [Source:UniProtKB/Swiss-Prot;Acc:Q9P896] [Aspergillus
           nidulans FGSC A4]
          Length = 682

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 101/521 (19%), Positives = 192/521 (36%), Gaps = 33/521 (6%)

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDD 359
           E  +       +                 P+P  V      +   + S + L        
Sbjct: 24  EVQAKHQDQGHTCPSRPSVPSLSRIYRCTPVPTIVLDASMVIIEVSNSHVALFGKPRDSL 83

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
           +  +    +    P  +       +    S R           +    + +  +   P  
Sbjct: 84  LHTSISDVSPECIPVPNIPILYGALRAACSTREIQVVEH----VVVGEKIAHNLRVTPVY 139

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTN 478
           +     E +    +E E++   +   +          +++   D  I +++  G I + N
Sbjct: 140 ED----ETLLFVVLEVENLRAEVINNQHAYMNETYKILVDTVKDYAIFMLDPTGHIATWN 195

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPS--VMNHYLTEILSLDLRQTLEKITLGSTKEE 536
                L GY  E+I+ K F++               L   L       +E       ++ 
Sbjct: 196 AGAGVLKGYKAEEIIGKHFSILYSPADRDNGKPARALDVCLREGR---IEDEGWRYRRDG 252

Query: 537 KLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
                 ++I  +        +     D++E K+ +          E+ S  K+DFLA +S
Sbjct: 253 SRFWANVLITPIYQFGQHVGFVKVTRDLTERKEAEA---CMIAAFEESSRLKTDFLANIS 309

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HEIRTP+  +     ++ +       +    E+AN +  S +L+L IVND+LD SK+ SG
Sbjct: 310 HEIRTPMNGMQIALTMLTDTGL----SEEQREHANIVQDSMSLLLQIVNDVLDYSKLSSG 365

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNIL 712
             +LH + + + E V   +   +    E  + + T  +  +P R+  D    +Q+  N++
Sbjct: 366 SFSLHADMLDIREIVGAVVRNCRSSLQE-GVELDTEISPKLPTRMRGDPLRYRQVLQNLV 424

Query: 713 SNAIHFTPSGG---QIIISTTHTSNEE--VILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
            NA+ FT  G    +I  ST    ++   V   V DTG+G+ +  +     PF +  NS 
Sbjct: 425 GNAVKFTEKGSIHVKITSSTDEEDSDSSVVRTEVTDTGIGVPDSAINTLFTPFSRFANSA 484

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA-KGTLIEII 807
             + +GTGLGL + K++ +   G       P   G++    
Sbjct: 485 ARKYQGTGLGLSICKSLAELMDGSVGYSPNPNASGSVFWFT 525



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/113 (15%), Positives = 37/113 (32%), Gaps = 9/113 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK---RQNT 142
            + +D  G++   +       G  A ++IG     +      D N      L    R+  
Sbjct: 182 IFMLDPTGHIATWNAGAGVLKGYKAEEIIGKHFSILYSPADRD-NGKPARALDVCLREGR 240

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA 195
              +   +  +G+  +  + +   PIY +  +  GF    +        +  A
Sbjct: 241 IEDEGWRYRRDGSRFWANVLI--TPIY-QFGQHVGF--VKVTRDLTERKEAEA 288


>gi|56412832|ref|YP_149907.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197361765|ref|YP_002141401.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|56127089|gb|AAV76595.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197093241|emb|CAR58686.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
          Length = 948

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 98/426 (23%), Positives = 172/426 (40%), Gaps = 35/426 (8%)

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
           +     L  I+      L +  I                 E        +  +   E  Q
Sbjct: 303 VPVDLVLERIR-----ILILNAILLNVLVGAGLFTLARMYERRIFIPAESDAQRLEEHEQ 357

Query: 454 L-CSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
               I+ +   GI I+   +G+ + +N            +  ++                
Sbjct: 358 FNRKIVASAPVGICILRTIDGVNILSNELAHTYLNMLTHEDRQR---------------- 401

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571
            LT+I+       ++      T     L +  +  +    +     + D+S   + +  L
Sbjct: 402 -LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSTRVKMEESL 456

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
               + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R       ++
Sbjct: 457 QEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR---LVTAMN 512

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
            S +L+L I++D+LD SKIES ++ +     S  E ++   +        K++ +     
Sbjct: 513 NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFIE 572

Query: 692 NNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
            ++P  +  D   ++Q+  N+LSNAI FT  G  I++       + + +RVRDTGVG+  
Sbjct: 573 PDVPVSLNGDPMRLQQVISNLLSNAIKFTDIG-CIVLHVRC-DGDYLSIRVRDTGVGIPA 630

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+   +  PL
Sbjct: 631 KEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTLRIPL 690

Query: 811 YDTSHP 816
           Y   +P
Sbjct: 691 YGAQYP 696


>gi|317154349|ref|YP_004122397.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316944600|gb|ADU63651.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 1100

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 139/799 (17%), Positives = 269/799 (33%), Gaps = 101/799 (12%)

Query: 76  FDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM--IGMRLCDVSDILHIDPNNHI 133
           F+P+   +RF    D        S EL KT+      +          S    + P   I
Sbjct: 200 FNPVS--LRFAVRAD--------SPELLKTLDADLGALKADERSAYHASARQWLSPAGRI 249

Query: 134 GDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193
           G  +     W G   L  + G  +++   L         R  +  +   +     +    
Sbjct: 250 GAEVAT--FWAGVIVLVLLAGATVWLGRRLFL------TRSEADCQNKALQEETEIRKRA 301

Query: 194 RALGKRLDKKFSHL-HEIKKGHSSVEKEKYDIFSQQSPP--PHLRMKNKVSSLTEYYAHK 250
           ++      ++   +  + +     VE     I          +      +  ++ +    
Sbjct: 302 QSALWESAERHRAMFTDNQLPQLFVESATLRIMEANPAAERFYGFRPGHLVGMSLHGLRL 361

Query: 251 DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310
               + E   L  S++  +  +  +  +   +      F + Q +  +    L      +
Sbjct: 362 RQPDEDENLALDGSKQLIVQHRLAWGEVRDVELFVSTVFLSDQEH--KLVTVLDISERVA 419

Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYA-NPSFLLLTKYKSVDDIEIAGGLSTL 369
                 E E      V    I F+ +  G      N  +  L   +       AG     
Sbjct: 420 AEEARRESEERLDLAVRGGDIAFWDWDIGEDRVVSNERWAELLGCRQDQL---AGRSDDW 476

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
           L      D  +++  +    D   +    +        E                   + 
Sbjct: 477 LSRLHPEDAASVREQLQRCLDGRALVFKVQFRLRTEADEWRWLGARGRVFLRADDGSPLR 536

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII--NREGIILSTNRAVSKLFG- 486
             GI  +  + R  + ++            + +  +     + +  I S    + +L G 
Sbjct: 537 MAGIAFDITERRRTENRL-----------SSINTCVLGFTADPDENISSLTGLIRELLGG 585

Query: 487 ----------------------------------YPVEDILRKPFTVFLEQNTPSVMNHY 512
                                                  +  +   VF+ ++  S     
Sbjct: 586 QVACYKRLEKGGNACVSAWGAPACAISADCVDESVFAAMLAGRGQGVFVVRDLQSTPFAL 645

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS---------SCYSLTMHDISE 563
              + S     T     +    + + +    ++ +  +             + T+    E
Sbjct: 646 QDTLASAASPSTFVGDLVFL--DGRPVGALYVLFRGDYEPSENDGKLMGIVAATIRVEEE 703

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            K    +L  AK+IAE  +  KS+FLA +SHEIRTPL  I G    +     G   +   
Sbjct: 704 RKISAQQLVKAKEIAESANRAKSEFLANMSHEIRTPLNGIFG----MLQLVGGTKLDDEQ 759

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            +Y +    SG  +L ++ND+LD SK+E+G + +  EP+ +   V++ +    + A EK+
Sbjct: 760 RDYVDTALTSGRSLLRVINDVLDFSKMEAGMLTVESEPLDIRHVVADVLENFSVQAAEKQ 819

Query: 684 ILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE------E 736
           +++      ++P  IL+D   ++QI  N++ NA+ FTPSG +I + +     +       
Sbjct: 820 LVMAVETDASVPPLILSDEARIRQILFNLVGNAVKFTPSG-RITVESWVQRADTTDQTMR 878

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           + L V DTG+G+    L      F Q+  S   +  GTGLGL + K +VD   G+ Y+ S
Sbjct: 879 LFLSVSDTGIGIPENMLGSVFSAFSQVDGSHTRKYGGTGLGLGIVKRLVDLMGGEIYVES 938

Query: 797 TPAKGTLIEIIFPLYDTSH 815
              +GT I +   + + S 
Sbjct: 939 D-GEGTRIHLFLKVREASE 956



 Score = 70.4 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/438 (9%), Positives = 106/438 (24%), Gaps = 54/438 (12%)

Query: 167 PIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFS 226
           P     +  +G  G G   +     D      R  +  + +     G   +++       
Sbjct: 138 PHVESFKRLAGGMGVGFTLLEFDSYDAVLSAIRQGEVDAGIANRLFGLRHMQELGVREAP 197

Query: 227 QQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYT-- 284
               P  LR   +  S         D+   +         S+         I     T  
Sbjct: 198 ILFNPVSLRFAVRADSPELLKTLDADLGALKADERSAYHASARQWLSPAGRIGAEVATFW 257

Query: 285 -----------------KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV- 326
                            ++ +    + + +               +   E          
Sbjct: 258 AGVIVLVLLAGATVWLGRRLFLTRSEADCQNKALQEETEIRKRAQSALWESAERHRAMFT 317

Query: 327 -DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS----DNNAI 381
            ++ P  F   +   +  ANP+      ++    + ++     L    +      D +  
Sbjct: 318 DNQLPQLFVESATLRIMEANPAAERFYGFRPGHLVGMSLHGLRLRQPDEDENLALDGSKQ 377

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
             V    +          + T+  + +    +T +   +     E   ++    +     
Sbjct: 378 LIVQHRLAWGEVRDVELFVSTVFLSDQEHKLVTVLDISERVAAEEARRESEERLDLAVRG 437

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
                                      +  E  ++S N   ++L G   + +  +     
Sbjct: 438 G-------------------DIAFWDWDIGEDRVVS-NERWAELLGCRQDQLAGRSDDWL 477

Query: 501 --LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII-IKKLPFSSC---- 553
             L     + +   L   L        +      T+ ++   L       L         
Sbjct: 478 SRLHPEDAASVREQLQRCL-DGRALVFKVQFRLRTEADEWRWLGARGRVFLRADDGSPLR 536

Query: 554 YSLTMHDISEWKQEKNKL 571
            +    DI+E ++ +N+L
Sbjct: 537 MAGIAFDITERRRTENRL 554


>gi|320167537|gb|EFW44436.1| response regulator receiver [Capsaspora owczarzaki ATCC 30864]
          Length = 1482

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 97/549 (17%), Positives = 198/549 (36%), Gaps = 67/549 (12%)

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLT----KYKSVD 358
             R          + E       D        +  +  +  AN +F         Y++  
Sbjct: 328 DLRQLDQQRTVASKNEKKYRNIFDNSHEAIVLIDKNDEVIEANRTFFEQYKIPRNYRTGS 387

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS------------DRTCIAASAR---LHTI 403
            + +   L+ L    +  +   +       +            +            L T+
Sbjct: 388 TLNVHLRLAELFPKQERRELRRVLTSTAGTAQTRSCELNSVSIEGQMYPVRIVASSLRTL 447

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ---------- 453
           + +   S               + +   G      DT+ + +       +          
Sbjct: 448 EDDLSTSERTLGSSMGVPAGTAQPVQHGGGPAPHPDTQQSPQVTHRSRKRADSGPQPPVP 507

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
           L S        I     E       R++  L      D   +     L  +  +     +
Sbjct: 508 LQS------QPIVTAGTE-------RSMQPLL----MDNNNQSTIARLLGSNAAQHEEAV 550

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLS--LRIIIKKLPFSSCY------SLTMHDISEWK 565
            +    D     +       ++ + +S   +   +  P  S +       +++ D+++ +
Sbjct: 551 AQPAGHDEPLETDFDIYTDDEDTEPISPSYQYQPRGTPVPSGWYRKPTRLVSIVDLTDQR 610

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           +     S A K  ++ +  KS FLA +SHE+RTPL  I+G ++++         N    +
Sbjct: 611 RVNAAESEALKE-KQANEAKSRFLANMSHEVRTPLNCILGMTQIMMTTSL----NDEQSD 665

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           Y   I  S  ++L ++ND+LD SKIE+G++++   P +  +     + L+   A  K +L
Sbjct: 666 YLGTIKVSAQILLTVINDILDFSKIEAGQLSIDAIPFNFVQITENIVDLLFPSAATKNLL 725

Query: 686 IRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-----VIL 739
           +       +PR+ + D    +QI +N++SN I FT +G  + +      + +     V  
Sbjct: 726 LSCYIDPKLPRVFVGDPNRFQQILVNLVSNGIKFTTTGS-VSLRCLLDEDVDDQNMVVRF 784

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            + DTG+G+    L++  + F Q+ +S      GTGLGL + K++V+   G   + ST  
Sbjct: 785 EIIDTGIGIEAEALDRLFQRFSQVDSSITRSYGGTGLGLVICKSLVNLMGGTIGVDSTLG 844

Query: 800 KGTLIEIIF 808
           +G+      
Sbjct: 845 QGSRFWFTI 853



 Score = 55.0 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/150 (11%), Positives = 42/150 (28%), Gaps = 6/150 (4%)

Query: 406 NRENSLAMTFIPFEKAN--QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
           +                       +  +    +       +        +  +I + + +
Sbjct: 296 DGRTDWIEVARSILLTLVYGTIVLLQTHVHHWDLRQLDQQRTVASKNEKKYRNIFDNSHE 355

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE--QNTPSVMNHYLTEIL--SL 519
            I +I++   ++  NR   + +  P          V L   +  P      L  +L  + 
Sbjct: 356 AIVLIDKNDEVIEANRTFFEQYKIPRNYRTGSTLNVHLRLAELFPKQERRELRRVLTSTA 415

Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
              QT        + E ++  +RI+   L 
Sbjct: 416 GTAQTRSCELNSVSIEGQMYPVRIVASSLR 445


>gi|167741025|ref|ZP_02413799.1| histidine kinase/response regulator fusion protein [Burkholderia
           pseudomallei 14]
          Length = 927

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 126/677 (18%), Positives = 232/677 (34%), Gaps = 59/677 (8%)

Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH 233
           +F   +G+ ++H  +      A+G     +          + ++ + +  +   QSP P 
Sbjct: 24  QFDAHQGYAVLHTPQGAPAALAVGIPAPGRS---ASAFAPYLALLETQLLMGDGQSPLPD 80

Query: 234 LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293
            R++    S    Y       + +         S+                 +     + 
Sbjct: 81  DRVEGYSFSPDGTYLSLLWSREDQAPEAFIESHSASGL---IGDAMRGIRYLRDASTIVP 137

Query: 294 NNSKESFEYLSHRNHP--------SLSAYFDEGENLTPETVDKCPIPFF----------- 334
             +     +L     P         +    D    L    V   P+  F           
Sbjct: 138 LRADRRTVWLPPHPDPLTGKPMIRIVQPAIDATGKLFAIYVRSLPLDMFYSNLNDAPAGS 197

Query: 335 ----VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390
               V   GN+   + +        +   + I       L           +  M   SD
Sbjct: 198 TLTIVDRKGNVILGSSNQHGGDGGATASALGI-----RSLGDGFGGLVERYQDGMFVTSD 252

Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR------INK 444
           +        +H   W    + A+              +    +     D +         
Sbjct: 253 QLPGTDWVLVHAYSWK-TIAAALALRFSLVTGLVAGIIVMLWLFAIQFDRKGLIPNYRRA 311

Query: 445 RKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
           +++    +   +IL     G+ +++  +G +L  N A+ +L     ++ L          
Sbjct: 312 QRLLESEVLNRTILRTAPVGLGLLSAQDGSVLLQNNAMLELSARTSDEPLPIRLWEAYRH 371

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                 +               +            L   ++  +   ++    T+ DIS 
Sbjct: 372 AVGRSSDE-------DGALLQHDLAIEREGANPVYLQANVVAARYRGANVLLCTLLDISL 424

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            K+ + KL  A+  A++ +  KS FLA +SHEIRTPL AIIG  E+++        + + 
Sbjct: 425 RKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPL----SEQQ 480

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            E  + ++   N +L I+ND+LD+SK+ESG+M L   P  +   + E +      A  K 
Sbjct: 481 SERLHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAYAPLAESKG 540

Query: 684 ILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIST----THTSNEEVI 738
           + + +S    + R    D   ++Q+  N++ NAI FT  G  I I             + 
Sbjct: 541 LALLSSIGEGVARHYAGDPTRIRQVLSNLIGNAIKFTERG-HISIDVHRAKAARDGSAIE 599

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           + V DTG+G+    +      + Q   S   R  G+GLGLPL + +V    G   I S P
Sbjct: 600 IWVNDTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLP 659

Query: 799 AKGTLIEIIFPLYDTSH 815
             GT + +  PL +  H
Sbjct: 660 DFGTTVTVALPLREARH 676


>gi|1237202|emb|CAA65612.1| histidine kinase [Dictyostelium discoideum]
          Length = 1670

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 94/355 (26%), Positives = 162/355 (45%), Gaps = 25/355 (7%)

Query: 464  GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL--EQNTPSVMNHYLTEILSLDL 521
            G+     +GIIL  N  + +  GY   D+        L        +    L E+ +   
Sbjct: 928  GVMFSTFKGIILDANDMLLQTIGYTRGDLENGKIDWMLLTPPEHFEISARALQELKAKRW 987

Query: 522  RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH-DISEWKQEKNKLSHAKKIAEK 580
             Q +EK  +   K  K + + I    +  S+   +T   D+S ++Q +         A +
Sbjct: 988  CQPIEKAYI--HKSGKRVPVLITSAMIDGSTEQCITFVFDLSRYRQAEM-------AAIE 1038

Query: 581  ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
             +  K+ F+  +SHE+RTP   I+G S+++ + +          +  + I RS + ++ +
Sbjct: 1039 ATRLKTQFITNISHELRTPCHGIVGMSQLLLDSQLTNT----QRDNIDSIKRSTDSLISL 1094

Query: 641  VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN---IPRI 697
            +ND+LD SK+E GK+ L  E   L   + E +      AN K I +      +    P I
Sbjct: 1095 INDILDFSKLEYGKVTLENESFELLPMIEEVLDSQATAANRKGIDLIFVMGRDYPVPPVI 1154

Query: 698  LADLRSVKQIALNILSNAIHFTPSGGQI-IISTTHTSNEEV--ILRVRDTGVGMTNYELE 754
              D  S+K++ LN++ NA+ FT +G  +  IST + S +++     V+D+G+G+   ++E
Sbjct: 1155 FGDRNSLKKVLLNLVGNAVKFTETGFVLLEISTDYESGDQISLRFTVKDSGIGIPENKIE 1214

Query: 755  KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS---TPAKGTLIEI 806
            +   PFGQI  S   +  G+GLGL   K +V    G   + S      KGT    
Sbjct: 1215 QIFVPFGQIDGSFSRKYGGSGLGLSFCKELVALMGGYIRVESGDQEGGKGTTFWF 1269


>gi|66821389|ref|XP_644179.1| histidine kinase [Dictyostelium discoideum AX4]
 gi|74860304|sp|Q869S5|DOKA_DICDI RecName: Full=Hybrid signal transduction protein dokA
 gi|60471990|gb|EAL69943.1| histidine kinase [Dictyostelium discoideum AX4]
          Length = 1671

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 94/355 (26%), Positives = 162/355 (45%), Gaps = 25/355 (7%)

Query: 464  GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL--EQNTPSVMNHYLTEILSLDL 521
            G+     +GIIL  N  + +  GY   D+        L        +    L E+ +   
Sbjct: 929  GVMFSTFKGIILDANDMLLQTIGYTRGDLENGKIDWMLLTPPEHFEISARALQELKAKRW 988

Query: 522  RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH-DISEWKQEKNKLSHAKKIAEK 580
             Q +EK  +   K  K + + I    +  S+   +T   D+S ++Q +         A +
Sbjct: 989  CQPIEKAYI--HKSGKRVPVLITSAMIDGSTEQCITFVFDLSRYRQAEM-------AAIE 1039

Query: 581  ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
             +  K+ F+  +SHE+RTP   I+G S+++ + +          +  + I RS + ++ +
Sbjct: 1040 ATRLKTQFITNISHELRTPCHGIVGMSQLLLDSQLTNT----QRDNIDSIKRSTDSLISL 1095

Query: 641  VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN---IPRI 697
            +ND+LD SK+E GK+ L  E   L   + E +      AN K I +      +    P I
Sbjct: 1096 INDILDFSKLEYGKVTLENESFELLPMIEEVLDSQATAANRKGIDLIFVMGRDYPVPPVI 1155

Query: 698  LADLRSVKQIALNILSNAIHFTPSGGQI-IISTTHTSNEEV--ILRVRDTGVGMTNYELE 754
              D  S+K++ LN++ NA+ FT +G  +  IST + S +++     V+D+G+G+   ++E
Sbjct: 1156 FGDRNSLKKVLLNLVGNAVKFTETGFVLLEISTDYESGDQISLRFTVKDSGIGIPENKIE 1215

Query: 755  KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS---TPAKGTLIEI 806
            +   PFGQI  S   +  G+GLGL   K +V    G   + S      KGT    
Sbjct: 1216 QIFVPFGQIDGSFSRKYGGSGLGLSFCKELVALMGGYIRVESGDQEGGKGTTFWF 1270


>gi|332667142|ref|YP_004449930.1| integral membrane sensor hybrid histidine kinase [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332335956|gb|AEE53057.1| integral membrane sensor hybrid histidine kinase [Haliscomenobacter
           hydrossis DSM 1100]
          Length = 1099

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 86/300 (28%), Positives = 147/300 (49%), Gaps = 18/300 (6%)

Query: 529 TLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
            +  +  + ++ +  ++  L       +T + I + ++++ +    K+ A+     K  F
Sbjct: 676 VITFSGSDGMIRIAYVLWTLSTLGLMLITAYYIKQLREDQAE----KEKAQASERAKHQF 731

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
           LA +SHEIRTP+ AI G ++++  +           EY   I +S + +L I+ND+LDIS
Sbjct: 732 LANMSHEIRTPMNAIKGMTDILLRRN----PKDDQKEYLEGIKQSSDSLLIIINDILDIS 787

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIA 708
           KIE+GK+ L  EP S+ E V+   +++Q  A EK + +          +  D   ++QI 
Sbjct: 788 KIEAGKVELENEPFSVVELVNNVHTIMQFKAEEKGLELLKDIPEENLTVQGDATRLRQIL 847

Query: 709 LNILSNAIHFTPSGGQIIISTTHTSNEE---VILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           LN++ NAI FT  G  +  S     + E   V   + DTG+G+    ++K  K F Q  +
Sbjct: 848 LNLIGNAIKFTEKG-VVTTSVKSEQSGEKVNVHFIISDTGIGIDQDRMDKIFKSFEQAYS 906

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP------LYDTSHPHDC 819
               +  GTGLGL ++K +V+ + GK ++ S   KG+      P        DT  P D 
Sbjct: 907 DTSRKFGGTGLGLSISKKLVELHGGKIWVESEKGKGSQFHFTIPYVIAGTAVDTPQPEDA 966


>gi|251799903|ref|YP_003014634.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           sp. JDR-2]
 gi|247547529|gb|ACT04548.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           sp. JDR-2]
          Length = 753

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 79/378 (20%), Positives = 168/378 (44%), Gaps = 28/378 (7%)

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
                  +++      L S +  TSD I +++ EG  +  N+A   +FG+ + +   +  
Sbjct: 400 TQLTAAAKELLHTKQYLESFINNTSDAIHVVDLEGRTIDANKAFETMFGWTLAEASGQKL 459

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL- 556
                    + +      IL+    Q  +  T+  +K+   + + I +  +     Y + 
Sbjct: 460 -PMFTPEILAELAEKGKIILNGG--QVTDYETVLYSKDGLPVEVSITLSGIRDERGYFVA 516

Query: 557 ---TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
                 DI+E K+ ++ L  ++K++           A V+HE+R PLT + GF ++++  
Sbjct: 517 YASIARDIAERKRTEDILRRSEKLSVV-----GQLAAGVAHEVRNPLTTLRGFVQLMQKD 571

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
                       Y N +    + +  IV++ L  +K ++ +    ++   L   +++ I 
Sbjct: 572 SRLD------KSYLNIMLSELDRINLIVSEFLVFAKPQADR----YQEADLYAIMNDIIV 621

Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
           L+   AN   + + T     +P +  +   +KQ+ +N++ N +   P GG++ +     S
Sbjct: 622 LLDSEANIHNVQMITCLEPGVPSLRCESNQLKQVLVNVMKNGMEAMPDGGELTLELARES 681

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
            + +++R++D GVG+   +L +  +PF         + EG GLGL +++ ++  + G   
Sbjct: 682 EQNILIRIKDQGVGIPEEDLARLGEPFFT------RKAEGNGLGLMISQQIIQHHKGTIQ 735

Query: 794 IFSTPAKGTLIEIIFPLY 811
             S P +GT +EI  PL 
Sbjct: 736 YSSKPGEGTCVEIRIPLS 753



 Score = 57.7 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 17/115 (14%), Positives = 36/115 (31%), Gaps = 4/115 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D  G   + ++      G    +  G +L   +  +  +       +L        +T 
Sbjct: 430 VDLEGRTIDANKAFETMFGWTLAEASGQKLPMFTPEILAELAEKGKIILNGGQVTDYETV 489

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
           L+  +G  + V I L+   I      F  +    I            + +R +K 
Sbjct: 490 LYSKDGLPVEVSITLSG--IRDERGYFVAYA--SIARDIAERKRTEDILRRSEKL 540


>gi|229098082|ref|ZP_04229030.1| hypothetical protein bcere0020_33160 [Bacillus cereus Rock3-29]
 gi|229117100|ref|ZP_04246479.1| hypothetical protein bcere0017_33800 [Bacillus cereus Rock1-3]
 gi|228666268|gb|EEL21731.1| hypothetical protein bcere0017_33800 [Bacillus cereus Rock1-3]
 gi|228685273|gb|EEL39203.1| hypothetical protein bcere0020_33160 [Bacillus cereus Rock3-29]
          Length = 516

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 100/525 (19%), Positives = 198/525 (37%), Gaps = 39/525 (7%)

Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSV 357
              + +                +     +  P     +   G + + NPS   +  Y S+
Sbjct: 17  RKRHPNISGRLRNHIQDRSLAEMYASLFEHNPDSIISLNLEGTILHINPSAERILGYTSL 76

Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
           + +E    +S L       + +  + V+ Y  +         + +I       L +    
Sbjct: 77  E-LERKNIISIL-------EAHISEQVLQYIKNTEADNQQEYILSIYHKEGYLLDVVTKL 128

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
                Q         ++P +   RI ++ ++    +L +++ A    +   + EG  L  
Sbjct: 129 VPIFVQHRLTGVYAIMKPLEKSERI-EKMLQESEKRLRTLMNAMPAFVIFKDHEGRWLEA 187

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN----HYLTEILSLDLRQTLEKITLGST 533
           N      F +       K  +  ++ N            + E+     RQ L        
Sbjct: 188 NDYALSCFNFHHVPYHGKKDSELIQYNAAYREAFLHCEEVDELAWQ-QRQILHGEEFIIH 246

Query: 534 KEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
           +++  L L I    L           +   D++E K+ +  L  ++K+A           
Sbjct: 247 RDDFDLILSISKVPLYHPDGSRKGLIVMGRDVTELKETEKLLRKSEKLAVV-----GQLT 301

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
           A ++HEIR PLT++ GF  ++      P  N     Y + +    + +  I +  + +SK
Sbjct: 302 AGIAHEIRNPLTSLKGFLTLLL-----PEINEENKWYVDVMLSEISQMESITSQFMAMSK 356

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709
            +     L  +  ++   + E ++ +   A    + I     N+   I  D   +KQ+ +
Sbjct: 357 PQ----VLSVQTYNIQTLIEEVVTFLLPTAIMHSVHIIMDHFNHKHDIQCDGNQLKQVFI 412

Query: 710 NILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
           NIL NAI   P+GG I I      N  +++R+ D G G+    + +  +PF        +
Sbjct: 413 NILKNAIEAMPNGGNIFIQIKSLDNNFIVIRIIDEGCGIPEDRISRLGEPFY------SL 466

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           + +GTGLGL +   +++ + GK +I S   KGT+++I  PL  + 
Sbjct: 467 KEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTIVDIQLPLSSSH 511


>gi|123966735|ref|YP_001011816.1| two-component sensor histidine kinase [Prochlorococcus marinus str.
           MIT 9515]
 gi|123201101|gb|ABM72709.1| two-component sensor histidine kinase [Prochlorococcus marinus str.
           MIT 9515]
          Length = 689

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 80/393 (20%), Positives = 176/393 (44%), Gaps = 40/393 (10%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            +++   ++  S++   +DG  +++ +G I+ TN    +LF +    +  K     + + 
Sbjct: 290 EELKAAQVKQQSLIATMADGAILLDSKGKIVLTNPTAKRLFRWEGRFLEGKYLLNEIPEI 349

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEE-KLLSLRIIIKKLPFSSCYSLTMHDISE 563
             + ++  +  IL+ +      + +LG      +++   ++          ++T+ D++ 
Sbjct: 350 LSNDLHTNIESILNREKESDDLRCSLGEPARTLRIVLQSVLDTNKIELKGIAVTIQDLTR 409

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
                           + ++ ++ F++ VSHE+RTPL  I  + E + + +   L N   
Sbjct: 410 --------------EVELNAAQNRFISNVSHELRTPLFNIKSYVETLYDLK-DQLSNEEQ 454

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
           +E+    +   + +  +VND+LD+S++ESGK+ +  EP+ +  A+ + +   +L A+EK 
Sbjct: 455 LEFLGIANSETDRLTRLVNDVLDLSRLESGKI-IQLEPMEIKPAIEQTLRNYRLNASEKN 513

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-------- 735
           + +      NIP IL +   + Q+  N+L N + F+P    + I      +         
Sbjct: 514 VALAHDIEENIPLILGNFDLLLQVFDNLLGNGLKFSPKNSTLKIRAYTWPDSCPAFPPND 573

Query: 736 --------------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
                         +V + + DTG G++  + EK    F ++ N+     +GTGLGL + 
Sbjct: 574 NNEAPQCELVSPLPKVRIEIADTGSGISQPDQEKIFDRFYRVENAV-HTEQGTGLGLSIV 632

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           + +++ + G+  + S    GT      PL  + 
Sbjct: 633 RGIIEKHGGEIRMASELGIGTTFWFDLPLEQSD 665


>gi|172062325|ref|YP_001809976.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria
           MC40-6]
 gi|171994842|gb|ACB65760.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria
           MC40-6]
          Length = 1032

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 123/722 (17%), Positives = 238/722 (32%), Gaps = 55/722 (7%)

Query: 119 CDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLA------ALPIYSRN 172
            +  +   I+      +L+            +  +    +  +          L      
Sbjct: 57  QESLERFRIEFTRRRAELVAEVAIMRALRNRYVEDMELQWASVVENPRSLPGVLAGRHGK 116

Query: 173 REFSGFRG---FGIVHVNRVDNDPRALGKRLDKKFS--HLHEIKKGHSSVEKEKYDIFSQ 227
           + F G +G                 +    L +      L  +       +         
Sbjct: 117 QTFIGRKGRIAIAAFADIPPVVSANSHLAYLARSLEPVELTGVLPPPQPADPGGTSYLID 176

Query: 228 QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287
            +    +   + +           DV    +     + ++S+               +++
Sbjct: 177 PNGDFIVAAGHPLVKRALALPGGFDVRALVEQLRPVTNDTSVSMAPVARQ--NTMALERR 234

Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP---FFVYSHGNLFYA 344
           +   L  +     +++   N   +  +      L    +           V S GNL   
Sbjct: 235 FDPVLGRSVLRMVQWVLGANGRPVVWFVINSPPLIEGILRSPGAGREYALVDSSGNL--- 291

Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
                 L   +    +          D  + +  + +  +    SDR   +    + TI 
Sbjct: 292 ------LLGRQPDSTMVARALQHARHDDGERAAAHRVG-INFVVSDRVPRSDEVVMATIS 344

Query: 405 WNR---ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME--IEVMQLCSILE 459
           W     + +L  +                  +         N+R +          +++ 
Sbjct: 345 WRAVLSDVALRASLTVAPALFAIALLWVAIVMFDRRALRPANRRAIRLIESEALNRTLIR 404

Query: 460 ATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
               G+ +++  +G  +  N  +        +D+  +P           +   Y     +
Sbjct: 405 TAPAGLVLLSFADGETIMRNDTLIAY----EQDVSGEPLGK-------RLWRAYRDGAPA 453

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKK 576
            + R  + +           + L   I +  +        T+ DI+  KQ + KL  A+ 
Sbjct: 454 GNARTRVTRELAVERPGHGTVYLDAHIVRTRYRGIDVLLCTLLDITTRKQAEEKLREARA 513

Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
            AE  +  KS FLA +SHEIRTPL AIIG  E+++  +               I  S + 
Sbjct: 514 AAEFANKAKSTFLATMSHEIRTPLNAIIGNLELMERAQMAVP----LRRRLGTIMSSSDA 569

Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696
           +L ++ND+LD+SK ES +M L   P  L   V++  ++ +  A+ K + +    A ++  
Sbjct: 570 LLRVINDVLDLSKAESNQMVLESIPFDLRRVVNDVAAIFRPLADAKNLALTCRIAPDLAN 629

Query: 697 -ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDTGVGMTNY 751
             + D   ++Q+  N++SNAI FT  GG + I             V + V DTG+G+   
Sbjct: 630 GYVGDSTRLRQLVSNLVSNAIKFTKRGG-VTIDVRLAKAGPAGRGVEIAVSDTGIGIPED 688

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
            L      + Q   S   R  GTGLGLPL + +V    G   + S   +GT+     PL 
Sbjct: 689 SLPTLFDVYVQTDASIYRRFGGTGLGLPLCRRIVTLMGGALNVDSRLGEGTIFVAALPLP 748

Query: 812 DT 813
           + 
Sbjct: 749 EA 750


>gi|329929173|ref|ZP_08282959.1| PAS domain S-box protein [Paenibacillus sp. HGF5]
 gi|328936850|gb|EGG33285.1| PAS domain S-box protein [Paenibacillus sp. HGF5]
          Length = 605

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 80/452 (17%), Positives = 169/452 (37%), Gaps = 55/452 (12%)

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
           V    +              +               + ++  +         + + T++ 
Sbjct: 185 VSYRVAQGLTSPLEKITRVARRISRLEYDARVK-IHRKDEIGQLAQAINGMADSLQTQL- 242

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            R +      L S+L   + GI +++  G I+  NRA  K+ G   E I  K +    + 
Sbjct: 243 -RTIRDNEDLLQSVLNNMTGGIVLVSGAGQIILVNRAAEKMLGINAEVITGKSYRELKQH 301

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR-IIIKKLPFS----SCYSLTM 558
              + +         L  +    +        E ++ +  + + +              +
Sbjct: 302 YELTKLME-----EGLGSQADFHEERNVYYPVESIIRIDGVTMMQEEEQEPYRRGMLFLL 356

Query: 559 HDISEWK---QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
            D+S+ +   +                  +S+F+A VSHE++TPL A+ GF+E +     
Sbjct: 357 QDVSDIRRLER-----------------MRSEFVANVSHELKTPLAAVKGFAETLLGG-- 397

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
           G         +   I      +  ++ D+L++SKIES ++ + + P+ L         ++
Sbjct: 398 GVTDEKTSRSFLQIIYDESERLNRLIGDILELSKIESKRIQMDYSPIHLSAFFDTISEMM 457

Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
           +  A +KRI +       +  +  D   ++QI +N+LSNAI +T  GG++ ++     N 
Sbjct: 458 RTVAEKKRISLELDVPEEL-FMEGDEDKLRQIFMNLLSNAISYTQEGGRVKLTAREKHNN 516

Query: 736 E-----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-------RGEGTGLGLPLAKA 783
                 V   V+D+G+G+   +L +  + F ++  ++                   + K 
Sbjct: 517 GSADDLVEFVVKDSGIGIPKKDLPRIFERFYRVDKARSRGSGGTGLGLS-------IVKH 569

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
           +VD + G   + S    G+   I  P+   +H
Sbjct: 570 LVDLHHGTIKVESELGIGSSFIIELPILQETH 601


>gi|295106297|emb|CBL03840.1| Signal transduction histidine kinase [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 554

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 74/249 (29%), Positives = 135/249 (54%), Gaps = 5/249 (2%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E ++ + + ++ +   E  + +KS+FLA +SHE+RTPLT+II F+E++   R     + +
Sbjct: 304 ERQRAQLEEANGRLRDE--NRYKSEFLAMMSHELRTPLTSIIAFTELL--NRNSEPADEK 359

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             E    I+ +   +L ++ND+L++S++++G++ ++ E V L +      ++VQ  AN K
Sbjct: 360 EAETRREIEANSRALLLMINDILEMSRLDAGRIEMNRETVDLGDIAGMVQAVVQPLANRK 419

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN-EEVILRV 741
            I        ++P + AD   ++ +  N+  NA+ FTP GG + +S +      +V LRV
Sbjct: 420 GIAFACEIDPDVPLVTADFEKLRHVLENLCGNAVKFTPEGGDVRLSISWHPECGQVWLRV 479

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            DTG+G+   +  +    F Q  +S   R  GTGLGL LAK   + + G   + S    G
Sbjct: 480 ADTGIGIAKKDQRRIFDRFVQADSSASRRYNGTGLGLSLAKEYAEMHGGTISVESELGHG 539

Query: 802 TLIEIIFPL 810
           ++  +  P+
Sbjct: 540 SVFTVRIPV 548


>gi|197265671|ref|ZP_03165745.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|207857690|ref|YP_002244341.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|238913908|ref|ZP_04657745.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
 gi|197243926|gb|EDY26546.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|206709493|emb|CAR33837.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
          Length = 948

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 98/426 (23%), Positives = 172/426 (40%), Gaps = 35/426 (8%)

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
           +     L  I+      L +  I                 E        +  +   E  Q
Sbjct: 303 VPVDLVLERIR-----ILILNAILLNVLVGAGLFTLARMYERRIFIPAESDAQRLEEHEQ 357

Query: 454 L-CSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
               I+ +   GI I+   +G+ + +N            +  ++                
Sbjct: 358 FNRKIVASAPVGICILRTIDGVNILSNELAHTYLNMLTHEDRQR---------------- 401

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571
            LT+I+       ++      T     L +  +  +    +     + D+S   + +  L
Sbjct: 402 -LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSTRVKMEESL 456

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
               + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R       ++
Sbjct: 457 QEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR---LVTAMN 512

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
            S +L+L I++D+LD SKIES ++ +     S  E ++   +        K++ +     
Sbjct: 513 NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFIE 572

Query: 692 NNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
            ++P  +  D   ++Q+  N+LSNAI FT  G  I++       + + +RVRDTGVG+  
Sbjct: 573 PDVPVSLNGDPMRLQQVISNLLSNAIKFTDIG-CIVLHVRC-DGDYLSIRVRDTGVGIPA 630

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+   +  PL
Sbjct: 631 KEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTLRIPL 690

Query: 811 YDTSHP 816
           Y   +P
Sbjct: 691 YGAQYP 696


>gi|83311112|ref|YP_421376.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82945953|dbj|BAE50817.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 848

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 93/248 (37%), Positives = 141/248 (56%), Gaps = 7/248 (2%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  A+K AE+ S  KS+FLA +SHE+RTPL  IIGFSE+I+++      +    E A+ 
Sbjct: 606 RLDEARKRAEEASRMKSEFLANMSHELRTPLNGIIGFSELIRDEA----ADDETRENADI 661

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I++S   +L++VN +LDI+KIE+G M L  + V L   V+EA ++ Q  A  K I + + 
Sbjct: 662 IEKSSRHLLELVNSILDIAKIEAGAMTLSIQEVKLAPLVAEAAAVHQSAAQGKGITLSSR 721

Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748
            A + P  I AD   ++QI  N+LSNA+ FT +G ++ +S     +  ++ +V DTG G+
Sbjct: 722 VAGDCPATIQADPLRLRQILHNLLSNAVKFTETG-EVALSVDLQPD-HLVFKVSDTGAGI 779

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
               L    + F Q+ +       GTGLGL LA+ +V+   G   + ST  KGT      
Sbjct: 780 PEAMLHAIFEKFRQVDSFLTRSHSGTGLGLTLARHLVELMGGVIGVESTVGKGTTFHFTL 839

Query: 809 PLYDTSHP 816
           PL+ T  P
Sbjct: 840 PLHQTETP 847


>gi|94314643|ref|YP_587852.1| two-component regulatory system sensory histidine kinase
           [Cupriavidus metallidurans CH34]
 gi|93358495|gb|ABF12583.1| sensor protein, histidine kinase-response regulator [Cupriavidus
           metallidurans CH34]
          Length = 784

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 101/544 (18%), Positives = 205/544 (37%), Gaps = 47/544 (8%)

Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKY 354
              +  + + R   +  A       L    +D  P    V S    +   +  +  L   
Sbjct: 21  LVVARCWRNARQASAKMAELKAERTLFQSLLDSSPNAVLVVSHEHRILKVSEPYARLCGV 80

Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
            + D I     L       +  D   +  + L R D       + L T+    ++     
Sbjct: 81  STEDLIGKP--LVHSHTTSRFLDLGGLLELTLLRMDGNE---RSDLITLGIPEQSVRTFR 135

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII------ 468
               +  ++         +  +  +        +  V Q  + ++  +D +++       
Sbjct: 136 VNATQCRSEDGVFSGTAIVLTDISEQV----AAQHRVDQTSAAMDDITDALSVTFFQLCR 191

Query: 469 NREGII----------LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
              G I           + N +  ++                L+ +  ++    + + ++
Sbjct: 192 ESNGHIWLPWVKGMQNTTLNWSAERMMR------DGGGILPNLDASEKTLFIGAVDQSIA 245

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKNKLSHAKK 576
                 +   T+  T + + + +     ++  +    +     D++E ++    L+ A +
Sbjct: 246 TQQPMDV---TVRLTSDNRWVHIASGNPRVGPNGATLWYAYAMDVTEMQRYNTLLATASR 302

Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
            AE  +  KS FLA +SHEIRTPL  +I   ++++             E  +  D S  L
Sbjct: 303 EAEAATEAKSRFLATMSHEIRTPLATVIASLDLLRESELST----HQREELDLADHSAKL 358

Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP- 695
           +L+I+ D+LD S+IE+G+M L   P+ L   + + + +      +K +++       +  
Sbjct: 359 LLEILGDILDFSRIEAGEMKLEQAPIDLRLIIEDVLRIQARQIEKKGVILDFYVEAGLAA 418

Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQII---ISTTHTSNEEVILRVRDTGVGMTNYE 752
            +L D   ++QI LN++ NA  FT  G  ++   +   H   + + L V DTG+G+   +
Sbjct: 419 TLLGDAVRLRQIVLNLVGNATKFTLQGSIVVRALLIADHPETQTIQLEVSDTGIGIPAEK 478

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI--IFPL 810
                K F Q   S   R  G+GLGL +   +V A  G   + STP  G+   +    P+
Sbjct: 479 QAALFKAFSQADVSTTRRFGGSGLGLSICSRLVQAMGGAVVLTSTPGVGSTFRVELTLPV 538

Query: 811 YDTS 814
            + S
Sbjct: 539 VERS 542


>gi|229075533|ref|ZP_04208520.1| hypothetical protein bcere0024_33430 [Bacillus cereus Rock4-18]
 gi|228707512|gb|EEL59698.1| hypothetical protein bcere0024_33430 [Bacillus cereus Rock4-18]
          Length = 516

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 100/525 (19%), Positives = 198/525 (37%), Gaps = 39/525 (7%)

Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSV 357
              + +                +     +  P     +   G + + NPS   +  Y S+
Sbjct: 17  RKRHPNISGRLRNHIQNRSLAEMYASLFEHNPDSIISLNLEGIILHINPSAERILDYTSL 76

Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
           + +E    +S L       + +  + V+ Y  +         + +I       L +    
Sbjct: 77  E-LEGKNIISIL-------EAHISEQVLQYIKNTEADNQQEYILSIYHKDGYLLDVVTKL 128

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
                Q         ++P +   RI ++ ++    +L +++ A    +   + EG  L  
Sbjct: 129 VPIFVQNRLTGVYAIMKPLEKSERI-EKMLQESEKRLRTLMNAMPAFVIFKDHEGRWLEA 187

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSV----MNHYLTEILSLDLRQTLEKITLGST 533
           N      F +       K  +  ++ N            + E+     RQ L        
Sbjct: 188 NDYALSCFNFHHVPYHGKKDSELIQYNEAYRKAFLHCEEVDELAWQ-QRQILHGEEFIIH 246

Query: 534 KEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
           +++  L L I    L           +   D++E K+ +  L  ++K+A           
Sbjct: 247 RDDFDLILSISKVPLYHPDGSRKGLIVMGRDVTELKETEKLLRKSEKLAVV-----GQLT 301

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
           A ++HEIR PLT++ GF  ++      P  N     Y + +    + +  I +  + +SK
Sbjct: 302 AGIAHEIRNPLTSLKGFLTLLL-----PEINEENKWYVDVMLSEISQMESITSQFMAMSK 356

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709
            +     L  +  ++   + E ++ +   A    + I     N+   I  D   +KQ+ +
Sbjct: 357 PQ----VLSVQTYNIQTLIEEVVTFLLPTAIMHSVHIIMDHFNHKHDIQCDGNQLKQVFI 412

Query: 710 NILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
           NIL NAI   P+GG I I      N  +++R+ D G G+    + +  +PF        +
Sbjct: 413 NILKNAIEAMPNGGNIFIQIKSLDNNFIVIRIIDEGCGIPEDRISRLGEPFY------SL 466

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           + +GTGLGL +   +++ + GK +I S   KGT+++I  PL  + 
Sbjct: 467 KEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTIVDIQLPLSSSH 511


>gi|206602092|gb|EDZ38574.1| Putative multi-sensor signal transduction histidine kinase
           [Leptospirillum sp. Group II '5-way CG']
          Length = 453

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 83/386 (21%), Positives = 169/386 (43%), Gaps = 22/386 (5%)

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
             G      D     RK++    +  ++++   +G+ + + +G IL  NRA  + F    
Sbjct: 80  YEGTVRLYRDREEASRKLKEASSRFAAVMDHMEEGVVVTDLKGKILLVNRAFFRFFKVEG 139

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
            D+  + F +       + +N  + ++L        E     +T       +    +   
Sbjct: 140 -DVRGESFGLL---ARKTGINDLIEDVLQNRRSVQKEVTFSETTPARTWSLVGTTARGSG 195

Query: 550 FSSCY-SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
            +  +    + D+++ +Q +                + DF+A VSHEIRTPLT+I GF+E
Sbjct: 196 ETDVFGIFLLFDLTDIRQLE--------------RIRKDFVANVSHEIRTPLTSIRGFAE 241

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
            + +   G        E++  I      + +IV+DLL +S++E+GK  + +  VSL   +
Sbjct: 242 ALHDG--GINDPKTAREFSGIILSHAERLGNIVSDLLHLSELETGKAIMRYGSVSLSRQI 299

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
           +    +   +A +K I               D   +  +  N++ NA+ +TP GG++   
Sbjct: 300 AHIRDVYADHARKKGIRFIVQLPEETLTYETDEGKMDLVLGNLVDNALKYTPEGGEVFFG 359

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                 + ++  VRD+GVG+   E+++  + F ++  ++     GTGLGL + + +++  
Sbjct: 360 -GWREGDAIVFEVRDSGVGIPRTEVDRIFERFYRVDRARSREMGGTGLGLSIVRHILEIL 418

Query: 789 MGKFYIFSTPAKGTLIEIIFPLYDTS 814
            G   + S+P +G+   +  P  + S
Sbjct: 419 QGTVRVTSSPGQGSTFLVRVPSREPS 444


>gi|168229631|ref|ZP_02654689.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|194468800|ref|ZP_03074784.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194455164|gb|EDX44003.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|205335848|gb|EDZ22612.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
          Length = 948

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 98/426 (23%), Positives = 172/426 (40%), Gaps = 35/426 (8%)

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
           +     L  I+      L +  I                 E        +  +   E  Q
Sbjct: 303 VPVDLVLERIR-----ILILNAILLNVLVGAGLFTLARMYERRIFIPAESDAQRLEEHEQ 357

Query: 454 L-CSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
               I+ +   GI I+   +G+ + +N            +  ++                
Sbjct: 358 FNRKIVASAPVGICILRTIDGVNILSNELAHTYLNMLTHEDRQR---------------- 401

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571
            LT+I+       ++      T     L +  +  +    +     + D+S   + +  L
Sbjct: 402 -LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSTRVKMEESL 456

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
               + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R       ++
Sbjct: 457 QEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR---LVTAMN 512

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
            S +L+L I++D+LD SKIES ++ +     S  E ++   +        K++ +     
Sbjct: 513 NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFIE 572

Query: 692 NNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
            ++P  +  D   ++Q+  N+LSNAI FT  G  I++       + + +RVRDTGVG+  
Sbjct: 573 PDVPVSLNGDPMRLQQVISNLLSNAIKFTDIG-CIVLHVRC-DGDYLSIRVRDTGVGIPA 630

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+   +  PL
Sbjct: 631 KEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTLRIPL 690

Query: 811 YDTSHP 816
           Y   +P
Sbjct: 691 YGAQYP 696


>gi|206562095|ref|YP_002232858.1| hybrid two-component system kinase-response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|198038135|emb|CAR54085.1| hybrid two-component system kinase-response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 1011

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 120/642 (18%), Positives = 226/642 (35%), Gaps = 41/642 (6%)

Query: 190 DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS--LTEYY 247
             D  A    +    S+           ++       +      + +   V    LT   
Sbjct: 148 PADSYAHDLAMASDMSYRVGAYVAKHDADRAIAGYAYRPDRSFAVVIPEPVPPDPLTASP 207

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
           A     L  +    + +      E        + +    +  G + +       +LS   
Sbjct: 208 ATDAATLVAKVAAGVGTPSPGQYEWHPPVYDPVQRRDVFRIAGAVYDAQSPRAVFLSTLP 267

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGL 366
              L      G        D       V +HG  L  A  +        +++ ++     
Sbjct: 268 VDVLRTRLSAG--------DTTDAAIIVDAHGRTLLRAGSADDDDATRAAIERLDARTRE 319

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
           +     P+           L +          +  T++                      
Sbjct: 320 AARRGGPRT--AFGDGLFSLSQPIPETDWTLVQTFTLRSLLATIGLRAGWYVAIMLAVIA 377

Query: 427 NMPQNGIEPEDVDTRINKRKMEI---EVMQLCSILEATSDGIAIIN-REGIILSTNRAVS 482
            +    +  +    + +  +            +I+EA   GIA+++  +G +L  N  + 
Sbjct: 378 LVWWLLVRFDRRVLKPDDARTRRVIDSENLNRTIVEAAPSGIALLSLADGAVLLQNDTMR 437

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
                   +            + P+ +  +     +    Q  +      T   + + L 
Sbjct: 438 DYDARRAGE-----------PSLPARLLEHFDRSPAAAAWQP-DLHVTLPTAGGETVDLL 485

Query: 543 IIIKKLP--FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
           + + +     +        DI+  K  + +L  A + A+  +  KS FLA +SHEIRTPL
Sbjct: 486 VNLVRTRFRDTDVVLCNFSDITSQKNIERQLDEAARAADAANDAKSAFLATMSHEIRTPL 545

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
            AI+G  E+I  +           E    ++ + +++LD++ND+LD+SKIE+G+M +   
Sbjct: 546 NAILGNLELIGREPLAAT----QRERLQTVEGASSVLLDLINDILDLSKIEAGQMTIEAI 601

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFT 719
           P  L E + +  ++ +  A  K +       + +P R L D   ++QIA N++ NAI FT
Sbjct: 602 PFDLAETIRQTGAMFEPLATAKGLQFDVFVDDALPARYLGDPTRIRQIAANLVGNAIKFT 661

Query: 720 PSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
             G +I +      + +    + + V DTG+GMT+ +     +PF Q   S   R  GTG
Sbjct: 662 NHG-EITLEVYLRDDTDPASPIAIGVSDTGIGMTDAQRAALFRPFTQADTSITRRYGGTG 720

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
           LGL L K +     G   + S P KG+   +  PL   +   
Sbjct: 721 LGLALTKQLTQMMHGTVDVKSEPGKGSTFVVTLPLRPATDAQ 762


>gi|206978261|ref|ZP_03239139.1| sensor histidine kinase ResE [Bacillus cereus H3081.97]
 gi|217959053|ref|YP_002337601.1| sensor histidine kinase ResE [Bacillus cereus AH187]
 gi|229138270|ref|ZP_04266865.1| hypothetical protein bcere0013_13910 [Bacillus cereus BDRD-ST26]
 gi|206743510|gb|EDZ54939.1| sensor histidine kinase ResE [Bacillus cereus H3081.97]
 gi|217063823|gb|ACJ78073.1| sensor histidine kinase ResE [Bacillus cereus AH187]
 gi|228645162|gb|EEL01399.1| hypothetical protein bcere0013_13910 [Bacillus cereus BDRD-ST26]
          Length = 591

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 81/371 (21%), Positives = 154/371 (41%), Gaps = 39/371 (10%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            ++ E  QL SIL + +DG+  +N+EG ++  N           E+       + L +  
Sbjct: 249 ALQQEKEQLASILSSMADGVITLNQEGEVVVINPPAEHFLQVWQEEK-----EIELSKKL 303

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
           PS +      ++  + +Q +E        +   + L   +            + D++E +
Sbjct: 304 PSELVELFHLVVESEQQQVVEINLQ----KGNYVVLMTPLYNQTKIRGAVAVLRDMTEER 359

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + +                + DF+A VSHE+RTP+  + G+SE I +            E
Sbjct: 360 RLE--------------KMRQDFIANVSHELRTPMVMLQGYSEAILDDIVQT--KEEINE 403

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           +   I      +  +VN+LLD++++ESG + LH   V +   V +     Q  A +K + 
Sbjct: 404 FVQIIYDESVRLGKLVNELLDLARMESGNVELHIGEVDIHPFVEKIGRKFQGIAKDKEVA 463

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +   F N I +   D   ++Q+  N++ NAI  T +GG + +     +N  +I  V+D+G
Sbjct: 464 LTVDFKNPIEQYPFDADRMEQVLTNLIDNAIRHTNAGGHVTLVIDTKNNG-LIFEVQDSG 522

Query: 746 VGMTNYELEKAMKPFGQIPNSQQI-------RGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
            G+   ++      F +   ++          G        +AK +V  + GK  + S  
Sbjct: 523 AGIPEEDIPFLFDRFYKADKARTRGKKGGTGLGL------AIAKNIVQGHDGKIAVSSVV 576

Query: 799 AKGTLIEIIFP 809
            +GT   +  P
Sbjct: 577 GEGTTFSVYLP 587


>gi|83816058|ref|YP_446610.1| two component system histidine kinase [Salinibacter ruber DSM
           13855]
 gi|83757452|gb|ABC45565.1| Two component system histidine kinase [Salinibacter ruber DSM
           13855]
          Length = 755

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 102/480 (21%), Positives = 192/480 (40%), Gaps = 28/480 (5%)

Query: 350 LLTKYKSVDDIEIAGGLSTL--LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
            +    S +D+        L  L         A +        + C    A     Q + 
Sbjct: 264 EIIPPLSEEDL-GRPLTEALPGLGETIRRGEPAWRAGFEKGEAQECQEERAMTTPKQSDA 322

Query: 408 E--NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465
               +    +    + +       Q  +  +  + +  +R++     +  ++L   +   
Sbjct: 323 SVHPAEHCRYFRVIQTSLGQGMDTQTVVLSDITEQKRRERELRESERRFQAMLNDPNILA 382

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFT--VFLEQNTPSVMNHYLTEILSLDLRQ 523
            +++ +G     N            D+L +PF    + E    S +   +  +      +
Sbjct: 383 GVLSPDGTFQKVNDTALGYIEATRADVLGRPFWETPWWETENRSAVREKVERVAEG---E 439

Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKK--- 576
            +       T + +  ++  I++ +           +T  DI+E K++  +L  AK+   
Sbjct: 440 YVRFEAEHVTPDGEARTVTGIMRPVTGEEGEVVSIFVTARDITERKRKARRLKQAKEQAE 499

Query: 577 ----IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
                AE+ S  KS  LA +SHEIRTPLT IIGF+E I ++  G  G      +A+ I+ 
Sbjct: 500 LSKLEAEEASRMKSAMLANMSHEIRTPLTGIIGFAEAIGDEIDGDGG---VAHFADLIED 556

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
           SG  +LD ++ +L++SK+E+G+M L   P+ L     +        A++  + +      
Sbjct: 557 SGRRLLDTLDAVLNLSKLEAGQMTLESRPIDLAGQARQVAREFAAEADDSGLALEVEAEE 616

Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752
                 AD   ++ +  N+LSNAI +T  G  + + T +  + E +L++ DTG+GM    
Sbjct: 617 A--GAWADEGGLQIVLQNLLSNAIKYTEEG-TVQVRT-YREDGEAVLQIEDTGIGMDPAV 672

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
            E   +PF Q         EGTG+GL + K   +   G   + +   +G+      P  D
Sbjct: 673 AESLFEPFRQGSEGLSREYEGTGIGLAVTKKATEQMGGSIDVETEKGQGSTFTARLPAAD 732



 Score = 46.2 bits (108), Expect = 0.021,   Method: Composition-based stats.
 Identities = 20/335 (5%), Positives = 68/335 (20%), Gaps = 20/335 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV--SDILHIDPNNHIGDLLKRQNTWYGK 146
           +   G  +++++     I      ++G    +    +  +        + +        +
Sbjct: 385 LSPDGTFQKVNDTALGYIEATRADVLGRPFWETPWWETENRSAVREKVERVAEGEYVRFE 444

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK--- 203
                 +G      +     P+     E      F                K+  ++   
Sbjct: 445 AEHVTPDGEAR--TVTGIMRPVTGEEGEVV--SIFVTARDITERKRKARRLKQAKEQAEL 500

Query: 204 ----FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
                     +K    +    +              + +++          D +  + + 
Sbjct: 501 SKLEAEEASRMKSAMLANMSHEIRTPLTGIIGFAEAIGDEIDGDGGVAHFADLIEDSGRR 560

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
            L T +      + +   + L            Q   + + E         + A      
Sbjct: 561 LLDTLDAVLNLSKLEAGQMTLESRPIDLAGQARQVAREFAAEADDSGLALEVEAEEAGAW 620

Query: 320 NLTPE----TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
                      +           G +               +   +   G+   +     
Sbjct: 621 ADEGGLQIVLQNLLSNAIKYTEEGTVQV---RTYREDGEAVLQIEDTGIGMDPAVAESLF 677

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
                    +    + T I  +      +    + 
Sbjct: 678 EPFRQGSEGLSREYEGTGIGLAVTKKATEQMGGSI 712


>gi|167849925|ref|ZP_02475433.1| sensory box histidine kinase [Burkholderia pseudomallei B7210]
 gi|167915237|ref|ZP_02502328.1| sensory box histidine kinase [Burkholderia pseudomallei 112]
          Length = 709

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 98/632 (15%), Positives = 209/632 (33%), Gaps = 26/632 (4%)

Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE 245
             R   D  A   + D          +     ++ +     +            + S   
Sbjct: 79  EIRKQFDALATLVQDDAVQQQRLATLRMLLEKKQHELAATIELRKTEGFDAAQAIVSSDA 138

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
                D           T ++     ++                G L      SF Y+  
Sbjct: 139 GKIFMDRARVMVNEMEATVQQQLRTLRDRARATRDIAIGVGLASGLLTLAVCVSFGYVMR 198

Query: 306 RNHPSLSAYFD---EGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIE 361
           R     +A      E   L   T+             G + + N     +T   +   + 
Sbjct: 199 RLLLVEAAAAHDLFEQRELLHVTLASIGDGVIATDVGGRITFFNRVAEEMTALCADAVVG 258

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                  L+     +      P  +    R   +  A    +  +    L +        
Sbjct: 259 QPIE-RVLMFRHATTQRVIDNPARVAVERRRTASLPAHTRFVGRSGGE-LPVDGNAAPTF 316

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
           +   + +    I  +  +    + +  +        +EA    + ++ R+G I+  N   
Sbjct: 317 DANGKLVGAVLIVRDVSERERAEERFRLA-------VEAAPTAMIMVGRDGRIVLVNSQA 369

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLL 539
            KLFGY   D++     + + +   +    +          + +   +   G  ++    
Sbjct: 370 EKLFGYARGDMIGHGIDMLVPERFRAGHWAHRDAFFGNPDARPMGEGRDLFGLRRDGSEF 429

Query: 540 SLRIIIKKLPFSSCYSLT--MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
            + I +  +  S    +   + DI+  K+ + +L    +   + +     F    SH+++
Sbjct: 430 PVEIGLNPITTSEGAFVLCSIADITARKRAELELRRRSEELARSNQDLEQFAYVASHDLQ 489

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
            PL A+ G  ++++ +  G L + R  E+  +       +  +++DLL  S++  G++  
Sbjct: 490 EPLRAVAGPLQLLQRRYQGQL-DARADEFIGHAVDGATRMQSLIDDLLSYSRV--GRLED 546

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
              PV  +  + EA+  +     E    +       +P +      +  +  N++ NAI 
Sbjct: 547 ARRPVDCEHVLDEALRNLSAAIRESGAQVTHD---PLPTVHGIEAQLVLLFQNLIGNAIK 603

Query: 718 FTPSGGQIIIST-THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
           F        I    HT ++  +LRVRD G+G+     E+    F ++    +    GTGL
Sbjct: 604 FRGKDRVARIHLEAHTRDDAWLLRVRDNGIGIDPQYFERIFLIFQRLH--TRREYPGTGL 661

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           GL L K +V+ + G+ ++ S P +GT      
Sbjct: 662 GLALCKRIVEHHGGRIFVESEPGQGTTFSFTL 693



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/353 (9%), Positives = 76/353 (21%), Gaps = 19/353 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL----KRQNTWY 144
           +   G +  ++ +  K  G     MIG  +  +        +    D        +    
Sbjct: 356 VGRDGRIVLVNSQAEKLFGYARGDMIGHGIDMLVPERFRAGHWAHRDAFFGNPDARPMGE 415

Query: 145 GKTTL-WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
           G+       +G+    P+++   PI +    F        +             +R  ++
Sbjct: 416 GRDLFGLRRDGS--EFPVEIGLNPITTSEGAFV----LCSIADITARKRAELELRRRSEE 469

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
            +  ++  +  + V         +    P   ++ +     +  A +      +    + 
Sbjct: 470 LARSNQDLEQFAYVASHDLQEPLRAVAGPLQLLQRRYQGQLDARADEFIGHAVDGATRMQ 529

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYF---GTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
           S    L        +   +            L+N S    E  +   H  L         
Sbjct: 530 SLIDDLLSYSRVGRLEDARRPVDCEHVLDEALRNLSAAIRESGAQVTHDPLPTVHGIEAQ 589

Query: 321 LTPETVDKCPIPFFVYSHGN-----LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
           L     +                  L         L + +             +    + 
Sbjct: 590 LVLLFQNLIGNAIKFRGKDRVARIHLEAHTRDDAWLLRVRDNGIGIDPQYFERIFLIFQR 649

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
                  P                   I    E     TF          E  
Sbjct: 650 LHTRREYPGTGLGLALCKRIVEHHGGRIFVESEPGQGTTFSFTLSRPGADETR 702



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/250 (9%), Positives = 56/250 (22%), Gaps = 13/250 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI----GDLLKRQNTWY 144
            D  G +   +    +     A  ++G  +  V    H      I       ++R+ T  
Sbjct: 232 TDVGGRITFFNRVAEEMTALCADAVVGQPIERVLMFRHATTQRVIDNPARVAVERRRTAS 291

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNR---VDNDPRALGKRLD 201
                  +  +   +P+D  A P +  N +  G     IV          +   L     
Sbjct: 292 LPAHTRFVGRSGGELPVDGNAAPTFDANGKLVGA--VLIVRDVSERERAEERFRLAVEAA 349

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
                +         V  +   +F            + +        H          P 
Sbjct: 350 PTAMIMVGRDGRIVLVNSQAEKLFGYARGDMIGHGIDMLVPERFRAGHWAHRDAFFGNPD 409

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
                            + +++  +     +  +       L      +     +     
Sbjct: 410 ARPMGEGR--DLFGLRRDGSEFPVEIGLNPITTSEGAF--VLCSIADITARKRAELELRR 465

Query: 322 TPETVDKCPI 331
             E + +   
Sbjct: 466 RSEELARSNQ 475


>gi|300717614|ref|YP_003742417.1| Capsular synthesis regulator component C [Erwinia billingiae Eb661]
 gi|299063450|emb|CAX60570.1| Capsular synthesis regulator component C [Erwinia billingiae Eb661]
          Length = 949

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 95/370 (25%), Positives = 164/370 (44%), Gaps = 29/370 (7%)

Query: 446 KMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           ++E        I+ +   GI I+   +G  + +N           ++  ++         
Sbjct: 352 RLEEHEQFNRKIVASAPVGICILRTSDGTNILSNELAHNYLSMLTQEDRQR--------- 402

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564
                   LTEI+       ++      T     L +  +  +    +     + D+S  
Sbjct: 403 --------LTEIICGQQVNFVD----VLTGSNTNLQISFVHSRYRNENVAICVLVDVSAR 450

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
            + +  L      AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G     
Sbjct: 451 VKMEESLQEMAHAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKSLPQGVES-- 507

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
                ++ S +L+L I++D+LD SKIES ++ +     S  E ++   S       +KR+
Sbjct: 508 -LVTAMNNSSSLLLKIISDILDFSKIESEQLRIEPREFSPREVITHISSNYLAMVVKKRL 566

Query: 685 LIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
            +     +++P  +  D   ++Q+  N+L+NAI FT +GG II+         +  RVRD
Sbjct: 567 TLWCFIDSDVPVTLDGDPLRLQQVISNLLNNAIKFTHTGG-IILQVFVKD-GYLAFRVRD 624

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TGVG+   E+ +   PF Q+ N  Q   +GTGLGL + + +++   G   + S P  G+ 
Sbjct: 625 TGVGIPAKEITRLFDPFFQVGNGVQRNFQGTGLGLAICEKLINMMDGDIEVDSEPGMGSQ 684

Query: 804 IEIIFPLYDT 813
             +  PLY+ 
Sbjct: 685 FVVRIPLYNA 694


>gi|161502574|ref|YP_001569686.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|160863921|gb|ABX20544.1| hypothetical protein SARI_00618 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 928

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 96/426 (22%), Positives = 170/426 (39%), Gaps = 35/426 (8%)

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
           +     L  I+      L +  I                 E        +  +   E  Q
Sbjct: 283 VPVDLVLERIR-----ILILNAILLNVLVGAGLFTLARMYERRIFIPAESDAQRLEEHEQ 337

Query: 454 L-CSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
               I+ +   GI I+   +G+ + +N            +  ++                
Sbjct: 338 FNRKIVASAPVGICILRTIDGVNILSNELAHTYLNMLTHEDRQR---------------- 381

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571
            L +I+       ++      T     L +  +  +    +     + D+S   + +  L
Sbjct: 382 -LAQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSTRVKMEESL 436

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
               + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R       ++
Sbjct: 437 QEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR---LVTAMN 492

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
            S +L+L I++D+LD SKIES ++ +     S  E ++   +        K++ +     
Sbjct: 493 NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFIE 552

Query: 692 NNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
            ++P  +  D   ++Q+  N+LSNAI FT  G  I++       + + + VRDTGVG+  
Sbjct: 553 PDVPVSLNGDPMRLQQVISNLLSNAIKFTDIG-CIVLHVRC-DGDYLSISVRDTGVGIPA 610

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+   +  PL
Sbjct: 611 KEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTLRIPL 670

Query: 811 YDTSHP 816
           Y   +P
Sbjct: 671 YGAQYP 676


>gi|126455985|ref|YP_001075878.1| sensory box histidine kinase [Burkholderia pseudomallei 1106a]
 gi|242312376|ref|ZP_04811393.1| sensory box histidine kinase [Burkholderia pseudomallei 1106b]
 gi|126229753|gb|ABN93166.1| sensory box histidine kinase [Burkholderia pseudomallei 1106a]
 gi|242135615|gb|EES22018.1| sensory box histidine kinase [Burkholderia pseudomallei 1106b]
          Length = 723

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 98/632 (15%), Positives = 209/632 (33%), Gaps = 26/632 (4%)

Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE 245
             R   D  A   + D          +     ++ +     +            + S   
Sbjct: 93  EIRKQFDALATLVQDDAVQQQRLATLRMLLEKKQHELAATIELRKTEGFDAAQAIVSSDA 152

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
                D           T ++     ++                G L      SF Y+  
Sbjct: 153 GKIFMDRARVMVNEMEATVQQQLRTLRDRARATRDIAIGVGLASGLLTLAVCVSFGYVMR 212

Query: 306 RNHPSLSAYFD---EGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIE 361
           R     +A      E   L   T+             G + + N     +T   +   + 
Sbjct: 213 RLLLVEAAAAHDLFEQRELLHVTLASIGDGVIATDVGGRITFFNRVAEEMTALCADAVVG 272

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                  L+     +      P  +    R   +  A    +  +    L +        
Sbjct: 273 QPIE-RVLMFRHATTQRVIDNPARVAVERRRTASLPAHTRFVGRSGGE-LPVDGNAAPTF 330

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
           +   + +    I  +  +    + +  +        +EA    + ++ R+G I+  N   
Sbjct: 331 DANGKLVGAVLIVRDVSERERAEERFRLA-------VEAAPTAMIMVGRDGRIVLVNSQA 383

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLL 539
            KLFGY   D++     + + +   +    +          + +   +   G  ++    
Sbjct: 384 EKLFGYARGDMIGHGIDMLVPERFRAGHWAHRDAFFGNPDARPMGEGRDLFGLRRDGSEF 443

Query: 540 SLRIIIKKLPFSSCYSLT--MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
            + I +  +  S    +   + DI+  K+ + +L    +   + +     F    SH+++
Sbjct: 444 PVEIGLNPITTSEGAFVLCSIADITARKRAELELRRRSEELARSNQDLEQFAYVASHDLQ 503

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
            PL A+ G  ++++ +  G L + R  E+  +       +  +++DLL  S++  G++  
Sbjct: 504 EPLRAVAGPLQLLQRRYQGQL-DARADEFIGHAVDGATRMQSLIDDLLSYSRV--GRLED 560

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
              PV  +  + EA+  +     E    +       +P +      +  +  N++ NAI 
Sbjct: 561 ARRPVDCEHVLDEALRNLSAAIRESGAQVTHD---PLPTVHGIEAQLVLLFQNLIGNAIK 617

Query: 718 FTPSGGQIIIST-THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
           F        I    HT ++  +LRVRD G+G+     E+    F ++    +    GTGL
Sbjct: 618 FRGKDRVARIHLEAHTRDDAWLLRVRDNGIGIDPQYFERIFLIFQRLH--TRREYPGTGL 675

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           GL L K +V+ + G+ ++ S P +GT      
Sbjct: 676 GLALCKRIVEHHGGRIFVESEPGQGTTFSFTL 707



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/353 (9%), Positives = 76/353 (21%), Gaps = 19/353 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL----KRQNTWY 144
           +   G +  ++ +  K  G     MIG  +  +        +    D        +    
Sbjct: 370 VGRDGRIVLVNSQAEKLFGYARGDMIGHGIDMLVPERFRAGHWAHRDAFFGNPDARPMGE 429

Query: 145 GKTTL-WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
           G+       +G+    P+++   PI +    F        +             +R  ++
Sbjct: 430 GRDLFGLRRDGS--EFPVEIGLNPITTSEGAFV----LCSIADITARKRAELELRRRSEE 483

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
            +  ++  +  + V         +    P   ++ +     +  A +      +    + 
Sbjct: 484 LARSNQDLEQFAYVASHDLQEPLRAVAGPLQLLQRRYQGQLDARADEFIGHAVDGATRMQ 543

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYF---GTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
           S    L        +   +            L+N S    E  +   H  L         
Sbjct: 544 SLIDDLLSYSRVGRLEDARRPVDCEHVLDEALRNLSAAIRESGAQVTHDPLPTVHGIEAQ 603

Query: 321 LTPETVDKCPIPFFVYSHGN-----LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
           L     +                  L         L + +             +    + 
Sbjct: 604 LVLLFQNLIGNAIKFRGKDRVARIHLEAHTRDDAWLLRVRDNGIGIDPQYFERIFLIFQR 663

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
                  P                   I    E     TF          E  
Sbjct: 664 LHTRREYPGTGLGLALCKRIVEHHGGRIFVESEPGQGTTFSFTLSRPGADETR 716



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/250 (9%), Positives = 56/250 (22%), Gaps = 13/250 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI----GDLLKRQNTWY 144
            D  G +   +    +     A  ++G  +  V    H      I       ++R+ T  
Sbjct: 246 TDVGGRITFFNRVAEEMTALCADAVVGQPIERVLMFRHATTQRVIDNPARVAVERRRTAS 305

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNR---VDNDPRALGKRLD 201
                  +  +   +P+D  A P +  N +  G     IV          +   L     
Sbjct: 306 LPAHTRFVGRSGGELPVDGNAAPTFDANGKLVGA--VLIVRDVSERERAEERFRLAVEAA 363

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
                +         V  +   +F            + +        H          P 
Sbjct: 364 PTAMIMVGRDGRIVLVNSQAEKLFGYARGDMIGHGIDMLVPERFRAGHWAHRDAFFGNPD 423

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
                            + +++  +     +  +       L      +     +     
Sbjct: 424 ARPMGEGR--DLFGLRRDGSEFPVEIGLNPITTSEGAF--VLCSIADITARKRAELELRR 479

Query: 322 TPETVDKCPI 331
             E + +   
Sbjct: 480 RSEELARSNQ 489


>gi|17547798|ref|NP_521200.1| composite two component sensor histidine kinase and response
           regulator hybrid transcription regulator protein
           [Ralstonia solanacearum GMI1000]
 gi|17430103|emb|CAD16788.1| probable composite two component regulatory (sensor histidine
           kinase and response regulator hybrid) transcription
           regulator protein [Ralstonia solanacearum GMI1000]
          Length = 994

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 99/581 (17%), Positives = 188/581 (32%), Gaps = 28/581 (4%)

Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
                      L       +P        +         +     + +       +R   
Sbjct: 37  DRAQADRTTRALPPMGHPLMPS-AAAQMASGTPAAAIALWTLAVLSMRHVQLRRENRRRR 95

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
              A      +     ++  P P             N +F  L        +        
Sbjct: 96  RAEADLARQLDFHHRLLESLPFPLAAQDTQHRYVAVNAAFCHLFGQPREALLGRTPAHLG 155

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
              A   +    I       S   C A      TI         + +             
Sbjct: 156 WRCAHTAARAQDIDRRATAASQGACEAL-----TITAADGRERHVLYWVAPVHGPDGRPG 210

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN------REGIILSTNRAVS 482
                  +    R  +   E    +L  + E+    +            G +       S
Sbjct: 211 GTVASLIDIDGIRDAQAPAEQRAQRLHELTESLPALVCQFEMRPGTAARGRMRHLAGNAS 270

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
           +  G P      +  +     +           + S      L++       +  +  L 
Sbjct: 271 ETLGAPAGKARGRLPSPARLVHRDDRQRMRGAALQSAAQLTLLDQQFRHGNGDGPVRWLH 330

Query: 543 IIIKKLPFSSC---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
           I  +    +     ++  + D++  + + + L  A++ AE     K  FLA +SHEIRTP
Sbjct: 331 IRARPRRGADGCTVWNGYLRDVTAERAQADALVSARQAAESALRAKDRFLATMSHEIRTP 390

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           +  ++G  E++   R               +  S   +L +++D+LD +KIE+ ++++  
Sbjct: 391 MNGVLGLVELLLQTRLER----EQQRMMTLVQESSRALLHVLDDILDYAKIEADRLSITP 446

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHF 718
            P  L   +   + L+   A+E+ + +R      +P  +  D   ++Q+  N+LSNAI F
Sbjct: 447 APTDLRALLDSTVGLLASRAHERSLAVRVDVDAAVPATVSVDGMRLRQVLCNLLSNAIKF 506

Query: 719 TPSGGQIIISTTH----TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           T  G  + +S            +I+RV DTG+G+          PF Q  ++   R  GT
Sbjct: 507 TEHGS-VRLSAKCMETAADTVHLIIRVTDTGIGIAPEAQATLFTPFVQADSTITHRQCGT 565

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF--PLYDT 813
           GLGL +++ +     G   + STP  GT + +    P+ D 
Sbjct: 566 GLGLAISRQLARLMGGSLDMDSTPNVGTTLTLRLEVPVVDA 606



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/256 (8%), Positives = 57/256 (22%), Gaps = 22/256 (8%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDV----SDILHIDPNNHIGDLLKRQNTWYG 145
           D       ++       G     ++G     +    +       +         Q     
Sbjct: 123 DTQHRYVAVNAAFCHLFGQPREALLGRTPAHLGWRCAHTAARAQDIDRRATAASQGACEA 182

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
            T     +G   +V   +A  P++  +    G     I        D +A  ++  ++  
Sbjct: 183 LTIT-AADGRERHVLYWVA--PVHGPDGRPGGTVASLI--DIDGIRDAQAPAEQRAQRLH 237

Query: 206 HLHEIKKGH------------SSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253
            L E                     +      S+    P  + + ++ S        D  
Sbjct: 238 ELTESLPALVCQFEMRPGTAARGRMRHLAGNASETLGAPAGKARGRLPSPARLVHRDDRQ 297

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
                     ++ + L +Q      +             +        +  +    +   
Sbjct: 298 RMRGAALQSAAQLTLLDQQFRHGNGDGPVRWLHIRARPRRGADGC-TVWNGYLRDVTAER 356

Query: 314 YFDEGENLTPETVDKC 329
              +      +  +  
Sbjct: 357 AQADALVSARQAAESA 372


>gi|124515848|gb|EAY57357.1| putative multi-sensor signal transduction histidine kinase
           [Leptospirillum rubarum]
          Length = 454

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 82/382 (21%), Positives = 165/382 (43%), Gaps = 23/382 (6%)

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
             G      D     RK +    +  ++++   +G+ + + +G IL  NRA  + F    
Sbjct: 80  YEGTVRLYRDREEASRKFKEATSRFSAVMDHMEEGVVVTDLKGKILLVNRAFFRFFKVEG 139

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
            D+  + F +       + +N  + ++L        E     +T       +    +   
Sbjct: 140 -DVRGESFGLLAR---KTGINDLIEDVLQNHRSVQKEVTFSETTPARTWSLVGTTARGSG 195

Query: 550 FSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
            +        + D+++ +Q +                + DF+A VSHEIRTPLT+I GF+
Sbjct: 196 ETDVFGIFFLLFDLTDIRQLE--------------RIRKDFVANVSHEIRTPLTSIRGFA 241

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
           E + +   G        E++  I      + +IV+DLL +S++E+GK  + +  VSL   
Sbjct: 242 EALHDG--GINDPKTAREFSGIILSHAERLGNIVSDLLHLSELETGKAVMRYGSVSLSRQ 299

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727
           ++    +   +A +K I               D   +  +  N++ NA+ +TP GG++  
Sbjct: 300 IAHIRDVYADHARKKGIRFTVQLPEETLTYETDEGKMDLVLGNLVDNALKYTPEGGEVFF 359

Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
                  + ++  VRD+GVG+   E+++  + F ++  ++     GTGLGL + + +++ 
Sbjct: 360 G-GWKEGDAIVFEVRDSGVGIPRTEVDRIFERFYRVDRARSREMGGTGLGLSIVRHILEI 418

Query: 788 NMGKFYIFSTPAKGTLIEIIFP 809
             G   + S+P +G+   +  P
Sbjct: 419 LQGTVRVTSSPGQGSTFFVRVP 440


>gi|209363900|ref|YP_001424221.2| two component system histidine kinase [Coxiella burnetii Dugway
           5J108-111]
 gi|207081833|gb|ABS77759.2| two component system histidine kinase [Coxiella burnetii Dugway
           5J108-111]
          Length = 831

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 89/511 (17%), Positives = 193/511 (37%), Gaps = 40/511 (7%)

Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
            F+   G +  AN   + L + K               D    +   A K  +    ++ 
Sbjct: 48  LFISDEGFIEAANDFAIKLLQLKP----------DQFPDVDFHAFCRANKYSLSRFFNKV 97

Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
                A   T        + +       +           +  +    ++   +++ ++ 
Sbjct: 98  EPPTEALEETYLLKGRQYVILW-KIIRFSQFDDMLKGSLLVGHDRTQLKLVSGELKSKIF 156

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL--RKPFTVFLEQNTPSVMN 510
              +IL      +   ++  + L  N  ++++ G P    +     F     +       
Sbjct: 157 FYENILSKLPTNVYWKDKNSVYLGCNERLARVMGLPSRKAIEGMTDFDFVWGKEAAKSFI 216

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQ 566
            +  +++   +    E   +       ++++      +               DI+E K+
Sbjct: 217 EFDQKVMRSGIPLMTED--VFKEASGNIVTVLTNKTPIKNEHGETIGVLAISVDITELKK 274

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN--QRFGPLGNPRYI 624
            + +L   ++ AE  +  KS+F+A +SH+IRTP+  ++G  + + N  +      N   +
Sbjct: 275 TQAQLEIQRQKAEAANKAKSEFIANMSHDIRTPIAGMLGMLQDLLNVAEETKTSSNASIL 334

Query: 625 EYANYIDR-------SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
                + R       + + +L + N++L++ ++ESGK +   E   L E +   I L+Q 
Sbjct: 335 NVIETVQRDSELLMGATDELLQLCNEILEVVRLESGKESEQSEAFDLRELIKRTIELLQP 394

Query: 678 YANEKRILIRTSFANNIPRILADLRS--VKQIALNILSNAIHFTPSG-GQIIIST----- 729
            A++K++ +       +P+   D     + +  LN++SNA+ FT +G  ++ +       
Sbjct: 395 VAHQKKLTLACEVDEGVPQ-YLDGIRMYLSRTLLNLISNALKFTENGFVKVKVRLSDKTN 453

Query: 730 ---THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
                     + + V DTG+G+   + +   + F ++  S +   +G GLGL   K  VD
Sbjct: 454 SHYRVGDKATIQIAVEDTGMGIPRDKFDTIFEHFSRLTPSYEGLYKGAGLGLYTVKRYVD 513

Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
           A  G+  + S   KGT   +I P     H  
Sbjct: 514 AMGGEITVDSEVGKGTCFTVIIPFTVADHAE 544



 Score = 40.8 bits (94), Expect = 0.93,   Method: Composition-based stats.
 Identities = 29/260 (11%), Positives = 72/260 (27%), Gaps = 17/260 (6%)

Query: 81  RTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI----GDL 136
                 W  D +      +E L + +G  + K I   + D   +   +           +
Sbjct: 165 LPTNVYWK-DKNSVYLGCNERLARVMGLPSRKAI-EGMTDFDFVWGKEAAKSFIEFDQKV 222

Query: 137 LKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRAL 196
           ++       +       G    V +     PI + + E  G     +          +A 
Sbjct: 223 MRSGIPLMTEDVFKEASGNI--VTVLTNKTPIKNEHGETIGVLAISV--DITELKKTQAQ 278

Query: 197 GKRLDKKFSHLHEIKKGHSSVEKEKYDI----FSQQSPPPHLRMKNKVSSLTEYYAHKDD 252
            +   +K    ++ K    +                        +   +S      +  +
Sbjct: 279 LEIQRQKAEAANKAKSEFIANMSHDIRTPIAGMLGMLQDLLNVAEETKTSSNASILNVIE 338

Query: 253 VLKTEKYPLLTSEESSLP---EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
            ++ +   L+ + +  L    E  +   +   + +++     L+   K + E L    H 
Sbjct: 339 TVQRDSELLMGATDELLQLCNEILEVVRLESGKESEQSEAFDLRELIKRTIELLQPVAHQ 398

Query: 310 SLSAYFDEGENLTPETVDKC 329
                  E +   P+ +D  
Sbjct: 399 KKLTLACEVDEGVPQYLDGI 418


>gi|213405247|ref|XP_002173395.1| peroxide stress-activated histidine kinase mak2 [Schizosaccharomyces
            japonicus yFS275]
 gi|212001442|gb|EEB07102.1| peroxide stress-activated histidine kinase mak2 [Schizosaccharomyces
            japonicus yFS275]
          Length = 2303

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 81/368 (22%), Positives = 151/368 (41%), Gaps = 28/368 (7%)

Query: 453  QLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
            Q  +IL+A    + +++   G I   N    K  G    D        F+  +       
Sbjct: 1629 QYKTILDAVPSIVWMMDDTTGDIEYMNINAQKFLGVSGGDHSSVSMLKFIHPDYQETWRA 1688

Query: 512  YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP----FSSCYSLTMHDISEWKQE 567
             L    S D  Q                        +         + +   DI+  K+ 
Sbjct: 1689 LLQ---SQDKLQKQGIEVPFLKCTGGYYWYLCRGLPMESVVQNQKKWIIVCFDITAEKEA 1745

Query: 568  KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
            ++        A +    K++FLA +SHE+RTP +   G   ++   +     +    +  
Sbjct: 1746 QD-------AAFRAMKLKANFLANMSHELRTPFSGFYGMLSLLSETKL----DEEQRDIV 1794

Query: 628  NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP-VSLDEAVSEAISLVQLYANEKRILI 686
            +   +S + +L I+NDLL+ S++ESGKM +  +    ++E++++ I LV    + K + I
Sbjct: 1795 STARQSCDSLLHIINDLLNFSELESGKMKIEPDKVFDVEESIADCIELVYPTTSRKHVQI 1854

Query: 687  RTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE------VIL 739
                  N+P +L  D   ++Q+  N+L NA  FT  G  I++  +    ++      + +
Sbjct: 1855 SYDIMPNVPSLLAGDCAKLRQVITNLLGNAAKFTMHG-HILLRCSILPEDDTKYSCKLKV 1913

Query: 740  RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
             V DTG+G+T  E++   +PF Q+  S      G+GLGL + + +     G   + S   
Sbjct: 1914 EVEDTGIGLTEEEMKLLFQPFTQVDGSTTRIYGGSGLGLSICRQICKIMNGDIGVESAVN 1973

Query: 800  KGTLIEII 807
            +G+     
Sbjct: 1974 EGSTFWFY 1981


>gi|253700434|ref|YP_003021623.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21]
 gi|251775284|gb|ACT17865.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21]
          Length = 773

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 93/558 (16%), Positives = 184/558 (32%), Gaps = 48/558 (8%)

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
              E       +   K +    +    +E  + +  R            E      V++ 
Sbjct: 91  AAVEAMRAGAHDYLLKDRLSRLIPAIKRELNDAVVRRERRMAEEALSATEARFHSLVEQS 150

Query: 330 PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389
            +  F+       Y NP F  +  Y+    IE     S  L      ++         R 
Sbjct: 151 LVGIFMLQDDIFIYVNPKFGEIFAYEPQQLIE-----SRSLLELVAPEDQIKVMTRFLRP 205

Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449
                 +       +    + + +              +   G   +  + +  + ++  
Sbjct: 206 LMEGNDSLHYFFRGKRRDGSLIDLEVNGTRTRVNGSAAI--IGTLLDITERKHAEAEL-- 261

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
              +L   +E +   + I +  G I   N    ++ GY  E+++ K   +     T + +
Sbjct: 262 --SKLWRAVEQSPVSVVITDLFGRIEYVNPKFIEVTGYTEEELIGKNPNILKSGMTDAKV 319

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWK 565
              L   ++               K  +L      I  +  +      +     D++E K
Sbjct: 320 YEELWSTITSGREW--HGELHNKKKNGELFWESGHISAIKNAEGQITHFVGVKEDVTERK 377

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
               +L   +K+              ++H+    LT I G+S ++        G+P + E
Sbjct: 378 LAIEQLRQVQKM-----EAIGRLAGGIAHDFNNLLTVINGYSTLLVRSLD--KGSPTHKE 430

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
            A  I R+G    D+   LL  S+    +  +    +++++ V     +++    E  I 
Sbjct: 431 -AEQILRAGERAADLTRQLLSFSR----RQIMEPRVLNINKQVRAVQKMLERLIGEH-IG 484

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS------------ 733
           + T+ + +   +  D   ++QI +N++ NA   + +G  I +ST +              
Sbjct: 485 LVTTLSEDAGFVKMDPGQMEQIVMNLIVNARDASETGAVIAMSTDNVDLDQNFSHLHPGS 544

Query: 734 --NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
                V L V D G GMT    +   +PF          G GTGLGL     +V  + G 
Sbjct: 545 VPGSYVRLSVADQGQGMTEEVKQHLFEPFFTTK----EMGRGTGLGLATVYGIVKQSGGY 600

Query: 792 FYIFSTPAKGTLIEIIFP 809
             + S P +G    I  P
Sbjct: 601 IEVVSEPGRGACFNIYLP 618



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/218 (10%), Positives = 54/218 (24%), Gaps = 5/218 (2%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL-HIDPNNHIGDLLKRQNTWYGKT 147
            D  G ++ ++ +  +  G    ++IG     +   +        +   +     W+G+ 
Sbjct: 278 TDLFGRIEYVNPKFIEVTGYTEEELIGKNPNILKSGMTDAKVYEELWSTITSGREWHGEL 337

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                 G   +    ++A  I +   + + F   G+              +++ K  +  
Sbjct: 338 HNKKKNGELFWESGHISA--IKNAEGQITHF--VGVKEDVTERKLAIEQLRQVQKMEAIG 393

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
                           I    +       K   +        +      +    L S   
Sbjct: 394 RLAGGIAHDFNNLLTVINGYSTLLVRSLDKGSPTHKEAEQILRAGERAADLTRQLLSFSR 453

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
               +     IN      ++    L          LS 
Sbjct: 454 RQIMEPRVLNINKQVRAVQKMLERLIGEHIGLVTTLSE 491


>gi|262403778|ref|ZP_06080336.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio sp. RC586]
 gi|262350282|gb|EEY99417.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio sp. RC586]
          Length = 830

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 79/371 (21%), Positives = 162/371 (43%), Gaps = 21/371 (5%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           R++  +  Q   +         + N  G ++  N +    F      +       FL + 
Sbjct: 325 RRLANKEKQFEDLFNFALSPTMLWNTAGRLIRMNPSAQIQF------LREDSQNHFLFEI 378

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT-MHDISE 563
               +   +T          +         + ++    +   K+       +T   D++ 
Sbjct: 379 LEKQLLPMITYAAQGKSPSEVTTEV-----DGRVYRWNLSPIKVEGQIISIITQGQDVTS 433

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + + +   A++ AE+ +  +++FLA++SHE+RTPL  ++G S+++K            
Sbjct: 434 IAEAEKQSQVARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRTPL----TDEQ 489

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            E+   +  SG  +L ++ND+LD S++E GK  +      L+E V     + +   N+K 
Sbjct: 490 REHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKSEFRLNELVYAIDRIYRPLCNDKG 549

Query: 684 ILIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EVIL 739
           + +       +   + +D   + QI  N+L+NAI FT  G  I +       +   ++++
Sbjct: 550 LELVVDSNITSAVLVRSDQVRINQILFNLLNNAIKFTHQGS-IRVVLELIEGDPLAQLVI 608

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
           +V DTG+G+   +L    +PF Q  ++      G+GLGL +  ++V+   G+ ++ S   
Sbjct: 609 QVVDTGIGIREQDLTVIFEPFVQAESTTTREYGGSGLGLAIVHSLVEMLSGQLHVSSEYG 668

Query: 800 KGTLIEIIFPL 810
           +GT  EI  P+
Sbjct: 669 RGTRFEIQLPI 679


>gi|256828552|ref|YP_003157280.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256577728|gb|ACU88864.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 869

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 85/385 (22%), Positives = 163/385 (42%), Gaps = 24/385 (6%)

Query: 441 RINKRKMEIEVMQLC---SILEATSD----GIAIINREGIILSTNRAVSKLFGYPVEDIL 493
           R     +     +L    +ILE   +    G   ++     L+ +    ++FG   ED  
Sbjct: 335 RQAISAILESQARLRTSQAILEQAQNIGHMGSWQLDLTDNRLTWSDEAYRIFGATQEDFE 394

Query: 494 --RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
              + F   +  +  + + H     +         +  +    +E++  +         +
Sbjct: 395 PSYERFLAIVHPDDRAAVEHAYASSIEESRESYEIEHRIVRRDDEEIRFVIERCVHERDA 454

Query: 552 SCYS----LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
                     + DI++ K  +  L  AK+ AE  S  KS+FLA +SHEIRTPL  ++G  
Sbjct: 455 LGTVIRSVGMVQDITDRKNAEQALERAKEAAESASQAKSEFLANMSHEIRTPLNGVMGIL 514

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
           ++++    G        ++     +S N +  +++D+LD+S++E+GK+++  EP  L E 
Sbjct: 515 QLLETSAEG----QEQKQFCTLALQSANRLNRLLSDILDLSRVEAGKLHIQSEPFRLHET 570

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII 726
           + + + L    A +  + +R      +P  I+ D   ++Q+  N++ NA  FT +G  + 
Sbjct: 571 LVQVLDLFVPTAVQSGVELRHHVDPGLPNSIVGDPIRLQQVLGNLIGNAFKFTTTG-YVN 629

Query: 727 IST-----THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           +        H     +   V DTG G+++ +L+    PF Q+        +G GLGL + 
Sbjct: 630 VEAYPLPAKHPGQLRIFFSVSDTGCGISDKDLKNLFTPFTQVSQGYAKSHQGAGLGLSIC 689

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEI 806
           K +V    G   + S    GT    
Sbjct: 690 KHLVTLMGGNMAVESETGVGTTFSF 714



 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/334 (7%), Positives = 78/334 (23%), Gaps = 21/334 (6%)

Query: 137 LKRQNTWYGKTTLWPIE-----GTNLYVPIDLAAL--PIYSRNREFSGFRGFGIVH---- 185
           L R  T  GK     +          +  +DL      +              +V     
Sbjct: 153 LMRAKTVSGKMIAGELNLDALLEHLQHFSLDLHGTVVAVTDGFGNLIAHPDMALVRQQTN 212

Query: 186 --VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL 243
               R+  +           F     +    + +   ++ +    S    +    K+ + 
Sbjct: 213 IGDWRIFKEASEAETFSALAFRDRSFVSDTVAQLPGHQWKVILSTSLWQAMSDTLKIVAT 272

Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303
            E       ++         +     P  E   ++     +++          +      
Sbjct: 273 IEILLVAYFLILFLSVRRTLNLRIIRPIVEFSKSMTGLAASQQPAPPEPAPFQELGLIER 332

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCP----IPFF-VYSHGNLFYANPSFLLLTKYKSVD 358
             R   S           +   +++      +  + +    N    +     +      D
Sbjct: 333 EFRQAISAILESQARLRTSQAILEQAQNIGHMGSWQLDLTDNRLTWSDEAYRIFGATQED 392

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
                      L      D  A++       + +  +       ++ + E    +     
Sbjct: 393 F---EPSYERFLAIVHPDDRAAVEHAYASSIEESRESYEIEHRIVRRDDEEIRFVIERCV 449

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
            + +     +   G+  +  D +  ++ +E    
Sbjct: 450 HERDALGTVIRSVGMVQDITDRKNAEQALERAKE 483



 Score = 38.5 bits (88), Expect = 5.1,   Method: Composition-based stats.
 Identities = 14/144 (9%), Positives = 37/144 (25%), Gaps = 9/144 (6%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL-----LKRQN 141
           W +D        S+E  +  G    +           I+H D    +         + + 
Sbjct: 367 WQLDLTDNRLTWSDEAYRIFG-ATQEDFEPSYERFLAIVHPDDRAAVEHAYASSIEESRE 425

Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
           ++  +  +   +   +   I+   +            R  G+V       +     +R  
Sbjct: 426 SYEIEHRIVRRDDEEIRFVIE-RCVHERDALGTVI--RSVGMVQDITDRKNAEQALERAK 482

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIF 225
           +      + K    +    +    
Sbjct: 483 EAAESASQAKSEFLANMSHEIRTP 506


>gi|94264450|ref|ZP_01288239.1| PAS [delta proteobacterium MLMS-1]
 gi|93455140|gb|EAT05362.1| PAS [delta proteobacterium MLMS-1]
          Length = 1089

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 125/666 (18%), Positives = 226/666 (33%), Gaps = 52/666 (7%)

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247
            +  +     +   +  +    +K G    E     +        ++             
Sbjct: 74  TLLRETLDALRGQGRFLAASDLVKNGLIDTEDRYRYLPILFRSLQNIAWSETRGRFALLD 133

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
               D+   E      +E  +     DF T         Q+             +     
Sbjct: 134 FQGVDIFSNELAGFPAAEREAAIGGSDFFTGREELMLFNQHGIIF---LTPVLIHDFIEG 190

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYAN--------------PSFLLLTK 353
              +S    E   L     D  P    +   G + +A+              P+F     
Sbjct: 191 WVEISLPGSEALQLFHSWEDDNPAMALLDRQGEVVFADTLHRRKRESDTSRPPAFSTTLP 250

Query: 354 YK-------SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
            K        ++ I   G +   ++  +      I   +L       +A       ++  
Sbjct: 251 VKVAGLEGYQLEIIISRGRIDAGINELRRRLLFTIAGALLAVIAAIVLATRLTSRPLEQL 310

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME-IEVMQLCSILEATSDGI 465
            +   A+   P  +     E   +       ++  +++ +    +  +L  ++  +   I
Sbjct: 311 GQRFKAIAAAPDLQTRLPGEGPLEVHQLTAAINQTLDQLERNYTDKTRLDQLMAGSPGVI 370

Query: 466 AIINRE-GIILSTNRAVSKLFGYPVEDILRKP--FTVFLEQNTPSVMNHYLTEILSLDLR 522
             ++ E       +    +L+G    +I+     +   +     +         L+    
Sbjct: 371 YALDPETLHPHFVSGNTEELYGESNREIMATTDWWRQRVHPGDLAAATAETAAWLAAACP 430

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH----DISEWKQEKNKLSHAKKIA 578
                      ++   L +   IK L  SS     +     DIS  K+++ KL  AK  A
Sbjct: 431 GNNIHRYRMVRRDGTQLWVEDRIKALRDSSGRIREIVGNHIDISARKKDEEKLREAKIAA 490

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
           E  +  KS FLA +SHEIRTP+ AIIG SE+               +    I  S  L+L
Sbjct: 491 EAANLAKSAFLANMSHEIRTPMNAIIGLSELTLQGELAA----EQRDSLEKIHSSSQLLL 546

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
            I+ND+LD SKIE+G + L   P      V     L +  A  K + +       IP +L
Sbjct: 547 GIINDILDYSKIEAGHLQLAPHPFRPARLVERLGHLFRQNAAAKGLELVYHLDPEIPPVL 606

Query: 699 -ADLRSVKQIALNILSNAIHFTPSGGQIIISTTH------------TSNEEVILRVRDTG 745
             D   + QI  N+L+NA+ FT  G ++ +                 +   +   V DTG
Sbjct: 607 LGDELRLGQIFTNLLANALKFTRKG-RVELRIQRLAAVAEAEADAAAAAVGLRCAVSDTG 665

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL-- 803
           VG+   + ++  KPF Q  ++   +  GTGLGL ++  +V+   G+  + S P +G+   
Sbjct: 666 VGIDQEQRKRLFKPFSQADDTTTRKYGGTGLGLVISARLVEQMGGRLQLESEPGRGSTFF 725

Query: 804 IEIIFP 809
             I  P
Sbjct: 726 FTITLP 731


>gi|90022853|ref|YP_528680.1| bacteriophytochrome-like protein [Saccharophagus degradans 2-40]
 gi|89952453|gb|ABD82468.1| ATP-binding region, ATPase-like protein [Saccharophagus degradans
           2-40]
          Length = 842

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 78/503 (15%), Positives = 188/503 (37%), Gaps = 28/503 (5%)

Query: 313 AYFDEGENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
              +         +++ P    +    G +   N     L  Y   + +     +  L+ 
Sbjct: 356 KRAESVTKDWRMIIEQAPNALIITNETGEIVVTNAQADTLFGYAPNELLGQK--IEVLVP 413

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
               + +  ++   +       + A   L   + +      +           P+     
Sbjct: 414 HSIRTAHPELRESFVAAPKARSMGAGRDLTAQRKDGSE---VPVEIGLSPLNTPQGRLVV 470

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
               +  + +  +  +E        I+E   + + + + +G I  TN     LFGY   +
Sbjct: 471 ASIVDISERKQAQHTLEK-------IIEQAPNALIMTDDKGTITLTNTQADHLFGYRRGE 523

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLP 549
           +  +   + + +   +    +          + +   +   G  K+   + + I +  L 
Sbjct: 524 LTGQKIDILVPEANRAGHPAHRDAFFKAPKSRLMGAGRDLAGRAKDGSEVPVEIGLNPLT 583

Query: 550 FSSC--YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
                    ++ DI E  + +  L H  +  ++++     F+  VSH++++PL  I GF+
Sbjct: 584 TPLGNFVVASIVDIKERLRAQKMLEHTNRQLQQKNHEMEQFIYTVSHDLKSPLVTIGGFA 643

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
             + +         +       I  + + +  +++DLL +S++   +  +    V L+  
Sbjct: 644 -KMLSTGLANTATDKQKHQLQRIQANVDHMETLLSDLLQLSRLI--RQGVDKTEVDLEAL 700

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727
           +   I+ ++       +  +      +  I  + R + Q   N+LSNAI +      + I
Sbjct: 701 LDSLINTLEGPIEA--VNAKVEICKPLAIIQGNERLISQCVQNLLSNAIQYKDEQRPLTI 758

Query: 728 STTHTSNEE-VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
           + + +   E V L ++DT +G+     E+  + F ++       GEGTG+GL + K +++
Sbjct: 759 TISTSEQAESVSLIIKDTAMGIDAKYHEQIFRIFERLD-----IGEGTGVGLAIVKTVME 813

Query: 787 ANMGKFYIFSTPAKGTLIEIIFP 809
            + G+  + S   KG+   ++FP
Sbjct: 814 KHSGQVVLESELGKGSTFTLVFP 836


>gi|310766217|gb|ADP11167.1| aerobic respiration control sensor protein ArcB [Erwinia sp.
           Ejp617]
          Length = 779

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 81/406 (19%), Positives = 177/406 (43%), Gaps = 17/406 (4%)

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR-KMEIEVMQLCSILEATSDGIA 466
            N   +     ++     E +       +++  R   + ++E +   L S L+A+ D + 
Sbjct: 110 GNITRLNQEIADRIKAEEERLQVMARLKDEMSRREEAQIELEQQSSFLRSFLDASPDLVF 169

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
             N +      NRA+  L G   + ++        + +  + +     ++   ++  T E
Sbjct: 170 YRNSDRQFSGCNRAMELLTGKSEKQLIGLSPKEVYDDDAATKVLETDEKVFHHNVSLTYE 229

Query: 527 KITLGSTKEEKLLSLRIIIK--KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
           +        +    +R +    ++   S       DI+E K+ ++ L +        S  
Sbjct: 230 QWLQYPDGRKACFEIRKVPYYDRVGKRSGLMGFGRDITERKRYQDALEN-------ASRE 282

Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
           K+ F++ +SHE+RTPL  I+G S ++ +       +   ++Y   I  S   + +I ND+
Sbjct: 283 KTTFISTISHELRTPLNGIVGLSRILLDTHL----DQEQLKYLKTIHVSAITLGNIFNDV 338

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRS 703
           +++ K+E  K+ L  +P+     +++  ++  L    K +         +   ILAD   
Sbjct: 339 IEMDKMERRKVQLDTQPMDFTGFLADLENISGLLVEPKGLKFVLETQPPLAHKILADGTR 398

Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
           ++QI  N++ NA+ FT  G +I++   + S E +   V+D+G+G+   E +K    + Q+
Sbjct: 399 LRQILWNLIGNAVKFTRQG-EIVVRVGYQSEECLRFDVQDSGIGIPQDEQDKIFAMYYQV 457

Query: 764 PNSQQIR-GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            + +  +   GTG+GL +++ +  +  G   +   P KG+   +  
Sbjct: 458 KDRRGGKPATGTGIGLAVSRRLAQSMGGDISVSGAPGKGSCFTLTL 503


>gi|218779492|ref|YP_002430810.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218760876|gb|ACL03342.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 1104

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 100/707 (14%), Positives = 209/707 (29%), Gaps = 57/707 (8%)

Query: 140 QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFS-----GFRGFGIVHVNRVDNDPR 194
           +  W          G  L +   L+   +      F        R    +      +   
Sbjct: 282 RRRWIFLDIDPKWSGETLRLFAILSGFAVLLAAGLFVIAYVLKMRLQEKITSLDEAHKKI 341

Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH----- 249
           +   ++ +  +   +       V++    + +Q           +V S  ++        
Sbjct: 342 SEQAKMLRIAAEAAQAGMWDFHVQERLSFLSTQWFSMLGYSRNAEVLSFEDFQDFIHPED 401

Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY-----LS 304
              +    +  +     S L  +  F   + +          ++ + +          ++
Sbjct: 402 LPGLANHFRDYIDGGGRSLLEYEARFKQADGSWRWVLSKGRAVERDERGRPTRIIGLNVN 461

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVY--SHGNLFYANPSFLLLTKYKSVDDIEI 362
            +          + E       D  P    +     G L  AN +F +       +D   
Sbjct: 462 IQTVKDAQEKVKQSEAKFRAIFDNAPYAIVINNLEDGKLVDANKAFFVNRGLSGPEDFAN 521

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
                       +S       +               L  +  +      +      +  
Sbjct: 522 IPPNGF----STMSREEVQAIINQLAKTGKLDGYETELVNV--DGSRGHIVFSSVVMEVA 575

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI--INREGIILSTNRA 480
              +      +  +  D +  + ++     +   I       IAI  ++ E  IL  N +
Sbjct: 576 GRKQ---VLSMVVDITDRKQAEMQLRQSEEKFSKIFSMAPFLIAISRLDDE-TILDVNNS 631

Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
            +++ G+   +I+ +  +       P+     + EI+        E        E +   
Sbjct: 632 FAEVTGWKRREIVGQNASDINFWADPATREGMIHEIMQGRDVLNREMDFCCRNGEIRSGL 691

Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE--SSHKSDFLARVSHEIRT 598
                 +L     +   M DI+E K+ + +    +    +             V+H+   
Sbjct: 692 YSARAIQLSEGWAFLFVMQDITEHKKLEKEQQRLQSQLLQAQKMEAVGTLAGGVAHDFNN 751

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
            + AIIGF+++  N+           E  + I         +   LL  ++ E     + 
Sbjct: 752 MIGAIIGFAQLAMNKMDQSHP---LHETFSQILDCSFRSASLTRQLLAFARKE----IVE 804

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718
              + ++ AV E + ++Q   +E  I +  +       +  D   + Q+  N+  NA   
Sbjct: 805 PMILDINTAVEELLKMLQRLISE-NIKLHWTPGPGPLIVKLDPSQLDQVLANLCVNARDA 863

Query: 719 TPSGGQIIISTTHT--------------SNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764
               G I I T                   E V++ V DTG G+    L    +PF    
Sbjct: 864 IADIGDITIKTQLQVFDEQTSLIHPDCLPGEYVMIAVSDTGCGIDEKTLAHIFEPFFTTK 923

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
                +G GTGLGL     +   N G   ++S P KG   ++ FP Y
Sbjct: 924 P----QGRGTGLGLATVYGIARQNSGFVKVYSEPGKGATFKVYFPRY 966



 Score = 39.2 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 8/73 (10%), Positives = 26/73 (35%), Gaps = 6/73 (8%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP---NNHIGDLLKRQNTWY 144
            +D    + +++    +  G    +++G    D++     DP      I ++++ ++   
Sbjct: 619 RLDDE-TILDVNNSFAEVTGWKRREIVGQNASDIN--FWADPATREGMIHEIMQGRDVLN 675

Query: 145 GKTTLWPIEGTNL 157
            +       G   
Sbjct: 676 REMDFCCRNGEIR 688


>gi|76819580|ref|YP_335541.1| sensory box histidine kinase [Burkholderia pseudomallei 1710b]
 gi|254264074|ref|ZP_04954939.1| sensory box histidine kinase [Burkholderia pseudomallei 1710a]
 gi|76584053|gb|ABA53527.1| sensory box histidine kinase [Burkholderia pseudomallei 1710b]
 gi|254215076|gb|EET04461.1| sensory box histidine kinase [Burkholderia pseudomallei 1710a]
          Length = 723

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 97/632 (15%), Positives = 208/632 (32%), Gaps = 26/632 (4%)

Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE 245
             R   D  A   + D          +     ++ +     +            + S   
Sbjct: 93  EIRKQFDALATLVQGDAVQQQRLATLRMLLEKKQHELAATIELRKTEGFDAAQAIVSSDA 152

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
                D           T ++     ++                G L      SF Y+  
Sbjct: 153 GKIFMDRARVMVNEMEATVQQQLRTLRDRARATRDIAIGVGLASGLLTLAVCVSFGYVMR 212

Query: 306 RNHPSLSAYFD---EGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIE 361
           R     +A      E   L   T+             G + + N     +T   +   + 
Sbjct: 213 RLLLVEAAAAHDLFEQRELLHVTLASIGDGVIATDVGGRITFFNRVAEEMTALCADAVVG 272

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                  L      +      P  +    R   +  A    +  +    L +        
Sbjct: 273 QPIEQ-VLTFRHAATQRVIDNPARVAVERRRTASLPAHTRFVGRSGGE-LPVDGNAAPTF 330

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
           +   + +    +  +  +    + +  +        +EA    + ++ R+G I+  N   
Sbjct: 331 DANGKLVGAVLVVRDVSERERAEERFRLA-------VEAAPTAMIMVGRDGRIVLVNSQA 383

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLL 539
            KLFGY   D++     + + +   +    +          + +   +   G  ++    
Sbjct: 384 EKLFGYARGDMIGHGIDMLVPERFRAGHWAHRDAFFGNPDARPMGEGRDLFGLRRDGSEF 443

Query: 540 SLRIIIKKLPFSSCYSLT--MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
            + I +  +  S    +   + DI+  K+ + +L    +   + +     F    SH+++
Sbjct: 444 PVEIGLNPITTSEGAFVLCSIADITARKRAELELRRRSEELARSNQDLEQFAYVASHDLQ 503

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
            PL A+ G  ++++ +  G L + R  E+  +       +  +++DLL  S++  G++  
Sbjct: 504 EPLRAVAGPLQLLQRRYQGQL-DARADEFIGHAVDGATRMQSLIDDLLSYSRV--GRLED 560

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
              PV  +  + EA+  +     E    +       +P +      +  +  N++ NAI 
Sbjct: 561 ARRPVDCEHVLDEALRNLSAAIRESGAQVTHD---PLPTVHGIEAQLVLLFQNLIGNAIK 617

Query: 718 FTPSGGQIIIST-THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
           F        I    HT ++  +LRVRD G+G+     E+    F ++    +    GTGL
Sbjct: 618 FRGKDRVARIHLEAHTRDDAWLLRVRDNGIGIDPQYFERIFLIFQRLH--TRREYPGTGL 675

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           GL L K +V+ + G+ ++ S P +GT      
Sbjct: 676 GLALCKRIVEHHGGRIFVESEPGQGTTFSFTL 707



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/353 (9%), Positives = 76/353 (21%), Gaps = 19/353 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL----KRQNTWY 144
           +   G +  ++ +  K  G     MIG  +  +        +    D        +    
Sbjct: 370 VGRDGRIVLVNSQAEKLFGYARGDMIGHGIDMLVPERFRAGHWAHRDAFFGNPDARPMGE 429

Query: 145 GKTTL-WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
           G+       +G+    P+++   PI +    F        +             +R  ++
Sbjct: 430 GRDLFGLRRDGS--EFPVEIGLNPITTSEGAFV----LCSIADITARKRAELELRRRSEE 483

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
            +  ++  +  + V         +    P   ++ +     +  A +      +    + 
Sbjct: 484 LARSNQDLEQFAYVASHDLQEPLRAVAGPLQLLQRRYQGQLDARADEFIGHAVDGATRMQ 543

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYF---GTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
           S    L        +   +            L+N S    E  +   H  L         
Sbjct: 544 SLIDDLLSYSRVGRLEDARRPVDCEHVLDEALRNLSAAIRESGAQVTHDPLPTVHGIEAQ 603

Query: 321 LTPETVDKCPIPFFVYSHGN-----LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
           L     +                  L         L + +             +    + 
Sbjct: 604 LVLLFQNLIGNAIKFRGKDRVARIHLEAHTRDDAWLLRVRDNGIGIDPQYFERIFLIFQR 663

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
                  P                   I    E     TF          E  
Sbjct: 664 LHTRREYPGTGLGLALCKRIVEHHGGRIFVESEPGQGTTFSFTLSRPGADETR 716



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/250 (9%), Positives = 56/250 (22%), Gaps = 13/250 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI----GDLLKRQNTWY 144
            D  G +   +    +     A  ++G  +  V    H      I       ++R+ T  
Sbjct: 246 TDVGGRITFFNRVAEEMTALCADAVVGQPIEQVLTFRHAATQRVIDNPARVAVERRRTAS 305

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNR---VDNDPRALGKRLD 201
                  +  +   +P+D  A P +  N +  G     +V          +   L     
Sbjct: 306 LPAHTRFVGRSGGELPVDGNAAPTFDANGKLVGA--VLVVRDVSERERAEERFRLAVEAA 363

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
                +         V  +   +F            + +        H          P 
Sbjct: 364 PTAMIMVGRDGRIVLVNSQAEKLFGYARGDMIGHGIDMLVPERFRAGHWAHRDAFFGNPD 423

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
                            + +++  +     +  +       L      +     +     
Sbjct: 424 ARPMGEGR--DLFGLRRDGSEFPVEIGLNPITTSEGAF--VLCSIADITARKRAELELRR 479

Query: 322 TPETVDKCPI 331
             E + +   
Sbjct: 480 RSEELARSNQ 489


>gi|186681745|ref|YP_001864941.1| PAS/PAC sensor signal transduction histidine kinase [Nostoc
           punctiforme PCC 73102]
 gi|186464197|gb|ACC79998.1| PAS/PAC sensor signal transduction histidine kinase [Nostoc
           punctiforme PCC 73102]
          Length = 659

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 95/506 (18%), Positives = 203/506 (40%), Gaps = 29/506 (5%)

Query: 312 SAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
               +   +L   T++   I    V S G++   N  F+ + +      +          
Sbjct: 162 EIELEASLSLLRSTLESTAIGIVAVNSEGDILSLNQKFVDMWQIPESLILSKKCPRCKAF 221

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
              KL D  A     L     +     +       +      +     +      + + +
Sbjct: 222 FENKLKDPQAFN--RLIWEVSSQSDFESYDILELKDGR----VFAHYSKPHLLDGKIIGR 275

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG-IILSTNRAVSKLFGYPV 489
                +  +++  +  + +  ++  ++ E T     +I  +G  +   N AV +L GY  
Sbjct: 276 VWSIWDITESKQTEEALRLNAVRFRTLAETTDTSTFLI--QGTRLCYINPAVEQLTGYTK 333

Query: 490 EDIL-RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
           E++L        ++      +          +      +     TK      L   +  L
Sbjct: 334 EELLTGFDLRRLIKSKRRRQVR------KQSEATNFEYQEMNILTKSGTERWLACAVVML 387

Query: 549 PFSSCY------SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
                +       +   DI+++K  +  L+ A + A++ S  ++ FL+ V H+ RTPL  
Sbjct: 388 DGVLDFGGKPVEMIAGIDITDYKYAELGLNQALEQAKQLSELRARFLSMVCHQFRTPLN- 446

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           I+ FS  +  +        +     ++I ++   +  +++D+L  SK E+ K+N   +P+
Sbjct: 447 IVSFSNSLLKEEVDKRTQKKIQPLLDHIQKATEQLGQMLDDILFFSKAEAEKINYEPKPL 506

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
            L +  ++ ++ +Q+  ++ RI   T    N      D + ++ I  N+L NAI ++PSG
Sbjct: 507 ELVDFCNDLVAEMQMTISKIRINFVTQ--ENSLTACIDKKLLEPILKNLLDNAIKYSPSG 564

Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
             + +  +   NE++I +V D G+G++  + ++  +PF +   +   R  GTGLGL + K
Sbjct: 565 ITVDLRLSCE-NEQLIFQVEDRGIGISALDQQRIFEPFYR--GTNIDRIPGTGLGLSILK 621

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIF 808
            +VD + G+  + S    GT   +  
Sbjct: 622 TLVDLHHGQVSVESQLGVGTTFTVTL 647



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/258 (14%), Positives = 75/258 (29%), Gaps = 16/258 (6%)

Query: 331 IPFFVYSHGNLFYANPSFLLLTKYKSVDDIE-IAGGLSTLLDAPKLS----DNNAIKPVM 385
             F +  +    Y N +   +T+Y   + +      +         S    + +      
Sbjct: 36  AAFCLGENAQFLYVNDATCRMTEYSREELLSMRLQDIDVDFSLHNWSNINSEGSLTFKSR 95

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD------ 439
                         +  ++                               +  D      
Sbjct: 96  YRTKRGRIFLVEISISYVKQQDIEFGCAFVREISDEIVELSVQKWTDGLRDAKDNLQQEF 155

Query: 440 --TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
              +  + ++E  +  L S LE+T+ GI  +N EG ILS N+    ++  P   IL K  
Sbjct: 156 SQLKSKEIELEASLSLLRSTLESTAIGIVAVNSEGDILSLNQKFVDMWQIPESLILSKKC 215

Query: 498 TVF--LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCY 554
                  +N       +   I  +  +   E   +   K+ ++ +       L       
Sbjct: 216 PRCKAFFENKLKDPQAFNRLIWEVSSQSDFESYDILELKDGRVFAHYSKPHLLDGKIIGR 275

Query: 555 SLTMHDISEWKQEKNKLS 572
             ++ DI+E KQ +  L 
Sbjct: 276 VWSIWDITESKQTEEALR 293



 Score = 45.0 bits (105), Expect = 0.052,   Method: Composition-based stats.
 Identities = 17/134 (12%), Positives = 44/134 (32%), Gaps = 9/134 (6%)

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           ++    D    +      L  N A  ++  Y  E++L           +       L   
Sbjct: 29  LINQAVDAAFCLGENAQFLYVNDATCRMTEYSREELLSMRLQDIDVDFS-------LHNW 81

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY--SLTMHDISEWKQEKNKLSHA 574
            +++   +L   +   TK  ++  + I I  +           + +IS+   E +     
Sbjct: 82  SNINSEGSLTFKSRYRTKRGRIFLVEISISYVKQQDIEFGCAFVREISDEIVELSVQKWT 141

Query: 575 KKIAEKESSHKSDF 588
             + + + + + +F
Sbjct: 142 DGLRDAKDNLQQEF 155


>gi|228984656|ref|ZP_04144829.1| hypothetical protein bthur0001_13580 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|229155144|ref|ZP_04283256.1| hypothetical protein bcere0010_13370 [Bacillus cereus ATCC 4342]
 gi|228628271|gb|EEK84986.1| hypothetical protein bcere0010_13370 [Bacillus cereus ATCC 4342]
 gi|228775050|gb|EEM23443.1| hypothetical protein bthur0001_13580 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 591

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 80/371 (21%), Positives = 154/371 (41%), Gaps = 39/371 (10%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            ++ E  QL SIL + +DG+  +N+EG ++  N           E+       + L +  
Sbjct: 249 ALQQEKEQLASILSSMADGVITLNQEGEVVVINPPAEHFLQVWQEEK-----EIELSKKL 303

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
           PS +      ++  + +Q +E        +   + L   +            + D++E +
Sbjct: 304 PSELVELFHLVVESEQQQVVEINLQ----KGNYVVLMTPLYNQTKIRGAVAVLRDMTEER 359

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + +                + DF+A VSHE+RTP+  + G+SE I +            E
Sbjct: 360 RLE--------------KMRQDFIANVSHELRTPMVMLQGYSEAILDDIVQT--KEEINE 403

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           +   I      +  +VN+LLD++++ESG + LH   V +   V +     Q  A +K + 
Sbjct: 404 FVQIIYDESVRLGKLVNELLDLARMESGNVELHIGEVDIHPFVEKIGRKFQGIAKDKEVA 463

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +   F + I +   D   ++Q+  N++ NAI  T +GG + +     +N  +I  V+D+G
Sbjct: 464 LTVDFKDPIEQYPFDADRMEQVLTNLIDNAIRHTNAGGHVTLVIDTKNNG-LIFEVQDSG 522

Query: 746 VGMTNYELEKAMKPFGQIPNSQQI-------RGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
            G+   ++      F +   ++          G        +AK +V  + GK  + S  
Sbjct: 523 AGIPEEDIPFLFDRFYKADKARTRGKKGGTGLGL------AIAKNIVQGHDGKIAVSSIV 576

Query: 799 AKGTLIEIIFP 809
            +GT   +  P
Sbjct: 577 GEGTTFSVYLP 587


>gi|15800126|ref|NP_286138.1| phosphate regulon sensor protein [Escherichia coli O157:H7 EDL933]
 gi|15829704|ref|NP_308477.1| phosphate regulon sensor protein [Escherichia coli O157:H7 str.
           Sakai]
 gi|168749853|ref|ZP_02774875.1| phosphate regulon sensor protein PhoR [Escherichia coli O157:H7
           str. EC4113]
 gi|168756933|ref|ZP_02781940.1| phosphate regulon sensor protein PhoR [Escherichia coli O157:H7
           str. EC4401]
 gi|168761597|ref|ZP_02786604.1| phosphate regulon sensor protein PhoR [Escherichia coli O157:H7
           str. EC4501]
 gi|168768342|ref|ZP_02793349.1| phosphate regulon sensor protein PhoR [Escherichia coli O157:H7
           str. EC4486]
 gi|168776303|ref|ZP_02801310.1| phosphate regulon sensor protein PhoR [Escherichia coli O157:H7
           str. EC4196]
 gi|168783257|ref|ZP_02808264.1| phosphate regulon sensor protein PhoR [Escherichia coli O157:H7
           str. EC4076]
 gi|168786238|ref|ZP_02811245.1| phosphate regulon sensor protein PhoR [Escherichia coli O157:H7
           str. EC869]
 gi|168800274|ref|ZP_02825281.1| phosphate regulon sensor protein PhoR [Escherichia coli O157:H7
           str. EC508]
 gi|195938539|ref|ZP_03083921.1| phosphate regulon sensor protein [Escherichia coli O157:H7 str.
           EC4024]
 gi|208807468|ref|ZP_03249805.1| phosphate regulon sensor protein PhoR [Escherichia coli O157:H7
           str. EC4206]
 gi|208815881|ref|ZP_03257060.1| phosphate regulon sensor protein PhoR [Escherichia coli O157:H7
           str. EC4045]
 gi|208823245|ref|ZP_03263563.1| phosphate regulon sensor protein PhoR [Escherichia coli O157:H7
           str. EC4042]
 gi|209398260|ref|YP_002269038.1| phosphate regulon sensor protein PhoR [Escherichia coli O157:H7
           str. EC4115]
 gi|217325530|ref|ZP_03441614.1| phosphate regulon sensor protein PhoR [Escherichia coli O157:H7
           str. TW14588]
 gi|254791578|ref|YP_003076415.1| phosphate regulon sensor protein [Escherichia coli O157:H7 str.
           TW14359]
 gi|261223876|ref|ZP_05938157.1| sensory histidine kinase in two-component regulatory system with
           PhoB [Escherichia coli O157:H7 str. FRIK2000]
 gi|261256410|ref|ZP_05948943.1| sensory histidine kinase in two-component regulatory system with
           PhoB [Escherichia coli O157:H7 str. FRIK966]
 gi|12513246|gb|AAG54746.1|AE005219_2 positive and negative sensor protein for pho regulon [Escherichia
           coli O157:H7 str. EDL933]
 gi|13359907|dbj|BAB33873.1| positive and negative sensor protein for pho regulon PhoR
           [Escherichia coli O157:H7 str. Sakai]
 gi|187768310|gb|EDU32154.1| phosphate regulon sensor protein PhoR [Escherichia coli O157:H7
           str. EC4196]
 gi|188015838|gb|EDU53960.1| phosphate regulon sensor protein PhoR [Escherichia coli O157:H7
           str. EC4113]
 gi|188999394|gb|EDU68380.1| phosphate regulon sensor protein PhoR [Escherichia coli O157:H7
           str. EC4076]
 gi|189356011|gb|EDU74430.1| phosphate regulon sensor protein PhoR [Escherichia coli O157:H7
           str. EC4401]
 gi|189362390|gb|EDU80809.1| phosphate regulon sensor protein PhoR [Escherichia coli O157:H7
           str. EC4486]
 gi|189368101|gb|EDU86517.1| phosphate regulon sensor protein PhoR [Escherichia coli O157:H7
           str. EC4501]
 gi|189373469|gb|EDU91885.1| phosphate regulon sensor protein PhoR [Escherichia coli O157:H7
           str. EC869]
 gi|189377386|gb|EDU95802.1| phosphate regulon sensor protein PhoR [Escherichia coli O157:H7
           str. EC508]
 gi|208727269|gb|EDZ76870.1| phosphate regulon sensor protein PhoR [Escherichia coli O157:H7
           str. EC4206]
 gi|208732529|gb|EDZ81217.1| phosphate regulon sensor protein PhoR [Escherichia coli O157:H7
           str. EC4045]
 gi|208737438|gb|EDZ85122.1| phosphate regulon sensor protein PhoR [Escherichia coli O157:H7
           str. EC4042]
 gi|209159660|gb|ACI37093.1| phosphate regulon sensor protein PhoR [Escherichia coli O157:H7
           str. EC4115]
 gi|209744226|gb|ACI70420.1| positive and negative sensor protein for pho regulon PhoR
           [Escherichia coli]
 gi|209744228|gb|ACI70421.1| positive and negative sensor protein for pho regulon PhoR
           [Escherichia coli]
 gi|209744232|gb|ACI70423.1| positive and negative sensor protein for pho regulon PhoR
           [Escherichia coli]
 gi|217321751|gb|EEC30175.1| phosphate regulon sensor protein PhoR [Escherichia coli O157:H7
           str. TW14588]
 gi|254590978|gb|ACT70339.1| sensory histidine kinase in two-component regulatory system with
           PhoB [Escherichia coli O157:H7 str. TW14359]
 gi|320192811|gb|EFW67451.1| phosphate regulon sensor protein [Escherichia coli O157:H7 str.
           EC1212]
 gi|320638388|gb|EFX08102.1| phosphate regulon sensor protein [Escherichia coli O157:H7 str.
           G5101]
 gi|326341158|gb|EGD64950.1| phosphate regulon sensor protein [Escherichia coli O157:H7 str.
           1044]
 gi|326346066|gb|EGD69805.1| phosphate regulon sensor protein [Escherichia coli O157:H7 str.
           1125]
          Length = 431

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 73/427 (17%), Positives = 151/427 (35%), Gaps = 37/427 (8%)

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             +L       I     L  + W     L +         +        G+    +  + 
Sbjct: 33  WFLLASVTGLLIWHFWNLLRLSW----WLWVDRSMTPPPGRGSWEPLLYGLHQMQLRNKK 88

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            +R++   + +  S  E+  D + +   EG I   N    ++ G    +   +     L 
Sbjct: 89  RRRELGNLIKRFRSGAESLPDAVVLTTEEGGIFWCNGLAQQILGLRWPEDNGQNILNLLR 148

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
               +               +   +         + L +R++           +   D++
Sbjct: 149 YPEFTQYL----------KTRDFSRPLNLVLNTGRHLEIRVMPYTHKQ---LLMVARDVT 195

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  Q +                + +F A VSHE+RTPLT + G+ E++  Q        +
Sbjct: 196 QMHQLEG--------------ARRNFFANVSHELRTPLTVLQGYLEMMDEQPLEGAVREK 241

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                + +      +  +V  LL +SKIE+    L  E V +   +       Q  + +K
Sbjct: 242 A---LHTMREQTQRMEGLVKQLLTLSKIEAAPTQLLNEKVDVPMMLRVVEREAQTLSQKK 298

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           +        N + ++  +   ++ +  N++ NA++ TP G  I +      +      V 
Sbjct: 299 Q-TFTFEIDNGL-KVSGNEDQLRSVISNLVYNAVNHTPEGTHITVRWQRVPHG-AEFSVE 355

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G G+    + +  + F ++  ++  +  G+GLGL + K  V+ +  +  I ST  KGT
Sbjct: 356 DNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHAVNHHESRLNIESTVGKGT 415

Query: 803 LIEIIFP 809
               + P
Sbjct: 416 RFSFVIP 422


>gi|206563353|ref|YP_002234116.1| hybrid two-component system kinase-response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|198039393|emb|CAR55359.1| hybrid two-component system kinase-response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 660

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 95/376 (25%), Positives = 156/376 (41%), Gaps = 20/376 (5%)

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
           L  +++A+ D I   +    I S N A + +FG        +     +         H +
Sbjct: 143 LRRVVDASPDAIVGTDAARRITSWNPAAASIFGIDTTQANGRDIVTMIAPRWLR--RHPV 200

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKN 569
               +           L    +            +  +       SLT+ +  E ++++ 
Sbjct: 201 PASFADLRAPVGPLDVLCVRPDGGRFRATFAASPIVDAQGNCTGLSLTLREAGERRRDER 260

Query: 570 KL-------SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
                      A+  A+  +  K + LA VSHE+RTPL  I G+ EV++N      G   
Sbjct: 261 HHLRSLRGARDARVQADASNRLKDELLATVSHELRTPLNVIYGWVEVLRN----ADGPGF 316

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             +    IDRS   +  +V DLLD S + +G++ L   PV L   V +A   +   A   
Sbjct: 317 VQQAVAAIDRSARSLSHMVADLLDASSLATGRLRLERVPVDLVRIVRDAARELDATAQAN 376

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
            +++ T +A     I AD   ++Q+  N+LSNAI FTP GG+I +S T  + E V L V 
Sbjct: 377 GLVLSTEYAMPACVIPADGERLRQVLSNLLSNAIKFTPPGGRINVSLT-RAGERVRLSVS 435

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKG 801
           DTG G+    L    + F +   +      G GLGL + + +   + G+    S    +G
Sbjct: 436 DTGQGIAPERLPHLFETFSRPEGAFTSPKRGLGLGLSIVRNIAQLHGGEVVATSAGAGRG 495

Query: 802 TLIEIIFPL-YDTSHP 816
           T + +  P  +D   P
Sbjct: 496 TTVTVTLPAGWDADDP 511



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 23/256 (8%), Positives = 45/256 (17%), Gaps = 11/256 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            DA   +   +       G    +  G  +  +     +  +         +        
Sbjct: 157 TDAARRITSWNPAAASIFGIDTTQANGRDIVTMIAPRWLRRHPVPASFADLRAPVGPLDV 216

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
              +           AA PI       +G      +              R  +      
Sbjct: 217 -LCVRPDGGRFRATFAASPIVDAQGNCTGLS--LTLREAGERRRDERHHLRSLRGARDAR 273

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
                 + ++ E     S +   P   +   V  L                         
Sbjct: 274 VQADASNRLKDELLATVSHELRTPLNVIYGWVEVLRNADGPGFVQQAVAAIDRSA----- 328

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
              +   H +           G L+            R+         +   L   T   
Sbjct: 329 ---RSLSHMVADLLDASSLATGRLRLERVPVDLVRIVRDAARELDATAQANGLVLSTEYA 385

Query: 329 CPIPFFVYSHGNLFYA 344
            P          L   
Sbjct: 386 MPACVIPADGERLRQV 401


>gi|84387569|ref|ZP_00990587.1| Signal transduction histidine kinase [Vibrio splendidus 12B01]
 gi|84377617|gb|EAP94482.1| Signal transduction histidine kinase [Vibrio splendidus 12B01]
          Length = 856

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 89/380 (23%), Positives = 172/380 (45%), Gaps = 25/380 (6%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            ++  +  +   +       I + + +G ++  N A  ++  +  +D          E  
Sbjct: 349 ERLSEQNQKFQDLFNFAHSPILVWSDKGDLIQMNPAA-RMALFDADDNYGA-VAQEFEHR 406

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISE 563
               ++  +       +   +          EK+    +   ++    +   +   DI++
Sbjct: 407 MLPNIHMVVQGSKLTGINVPI---------GEKVFRWNMSAIRVEHGITGVVVQGQDITK 457

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + + +   A++ AE  ++ ++DFLA++SHEIRTPL  I+G S+++K      + +   
Sbjct: 458 LIEAERQADRAREEAEHLANVRADFLAKMSHEIRTPLNGILGVSQLLKR----SIHSEDN 513

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            E  + +  S   +L ++ND+LD SKIE G+ N+  +   L E V+   S+ +    +K 
Sbjct: 514 REQVDVLCNSAEHLLAVLNDILDFSKIEQGQFNIQKKDFRLGELVNTLDSIYRPLCGDKS 573

Query: 684 I--LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-----SNEE 736
           I   I    A++I  I  D   + QI  N++SNA+ FT  GG I +S          +  
Sbjct: 574 IAFTIVNHLADDI-EINTDQVRLNQIMFNLVSNALKFTHQGG-ISVSFELESIFNSDHAS 631

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           +I+RV+D+G+G+   +++   +PF Q   +      GTGLGL + K +VD   G   + S
Sbjct: 632 LIVRVKDSGIGIDESKIDAVFEPFVQAEETTTREYGGTGLGLTIVKNLVDMLEGDIQVRS 691

Query: 797 TPAKGTLIEIIFPLYDTSHP 816
              +G+   I  P+   + P
Sbjct: 692 EINQGSEFIIEIPVEVHTKP 711


>gi|304321015|ref|YP_003854658.1| sensor histidine kinase/response regulator [Parvularcula
           bermudensis HTCC2503]
 gi|303299917|gb|ADM09516.1| sensor histidine kinase/response regulator [Parvularcula
           bermudensis HTCC2503]
          Length = 517

 Score =  301 bits (770), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 94/369 (25%), Positives = 157/369 (42%), Gaps = 29/369 (7%)

Query: 458 LEATSDGIAIINREGIILSTNRAV----SKLF-----GYPVEDILRKPFTVFLEQNTPSV 508
           L+   +G  I +    ++  N+      +++F     G P++ I+R+   + L    P  
Sbjct: 5   LDCLPNGFVIYDPTLHLIYGNQVARDRNAQMFELLEAGVPLDQIVRRQLKLILPDLPPDE 64

Query: 509 MNHYLTEI---LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
                 +    L   L         G T +     +         S        DI+  +
Sbjct: 65  FEESAEDYIYRLRTGLPVEFHTE-NGRTAQSNFFEME--------SGERVAVTVDITAIR 115

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
             + +L  A+  AE  +  KS FLA  SHEIRTPL  I+G +E +              +
Sbjct: 116 ANEQRLRLARSEAEAANKTKSAFLANTSHEIRTPLNGILGLTEHVLKLDLPT----EARQ 171

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           + N I  +G  +L ++ND+LD+SKIE+G   L  +  +L E V +   L    A +K + 
Sbjct: 172 HLNTIHDAGTTLLTLLNDILDLSKIEAGAFELAPDEKALSETVGKVERLWSGPAKQKGLS 231

Query: 686 IRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEE--VILRV 741
           +       +P  ++AD   + Q   N++SNAI FT  G   I +  +     +  V + V
Sbjct: 232 LDVVIGPGVPEKVIADHHRLYQCLSNLVSNAIKFTEEGSVHIRVDASKPKAGQSVVTVAV 291

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            DTG G+++    +  KPF Q  +S      GTGLGL + + ++D   G   + S    G
Sbjct: 292 SDTGPGISDDIKTQLFKPFTQADSSTSRTYGGTGLGLSIVQGLMDLMGGSVDLESKVGVG 351

Query: 802 TLIEIIFPL 810
           T   +  P+
Sbjct: 352 TTFRVRLPV 360


>gi|168818004|ref|ZP_02830004.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|197247563|ref|YP_002147227.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197211266|gb|ACH48663.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|205345045|gb|EDZ31809.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
          Length = 948

 Score =  301 bits (770), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 98/426 (23%), Positives = 172/426 (40%), Gaps = 35/426 (8%)

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
           +     L  I+      L +  I                 E        +  +   E  Q
Sbjct: 303 VPVDLVLERIR-----ILILNAILLNVLVGAGLFTLARMYERRIFIPAESDAQRLEEHEQ 357

Query: 454 L-CSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
               I+ +   GI I+   +G+ + +N            +  ++                
Sbjct: 358 FNRKIVASAPVGICILRTIDGVNILSNELAHTYLNMLTHEDRQR---------------- 401

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571
            LT+I+       ++      T     L +  +  +    +     + D+S   + +  L
Sbjct: 402 -LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSTRVKMEESL 456

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
               + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R       ++
Sbjct: 457 QEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR---LVTAMN 512

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
            S +L+L I++D+LD SKIES ++ +     S  E ++   +        K++ +     
Sbjct: 513 NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFIE 572

Query: 692 NNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
            ++P  +  D   ++Q+  N+LSNAI FT  G  I++       + + +RVRDTGVG+  
Sbjct: 573 PDVPVSLNGDPMRLQQVISNLLSNAIKFTDIG-CIVLHVRC-DGDYLSIRVRDTGVGIPA 630

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+   +  PL
Sbjct: 631 KEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTLRIPL 690

Query: 811 YDTSHP 816
           Y   +P
Sbjct: 691 YGAQYP 696


>gi|306827821|ref|ZP_07461091.1| sensor histidine kinase VicK [Streptococcus pyogenes ATCC 10782]
 gi|304429991|gb|EFM33030.1| sensor histidine kinase VicK [Streptococcus pyogenes ATCC 10782]
          Length = 450

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 91/406 (22%), Positives = 166/406 (40%), Gaps = 36/406 (8%)

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDT-RINKRKMEIEVMQLCSILEATSDGIAIINREG 472
            +          E M  +    +  D  R+    +  E  +L SIL   SDG+   +R G
Sbjct: 55  RYTDIIDEKADIELMELSDQLNDLSDVFRLTHENLAQEKNRLASILAYMSDGVLATDRSG 114

Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
            I+  N    K      E+ L+K  T  LE +T       +         +T        
Sbjct: 115 KIIMINETARKQLNLSKEEALKKNITDLLEGDTSYTYRDLV--------SKTPVVTVNSR 166

Query: 533 TKEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
               + +SLR+        S +     + +HD +E ++E+ +                 F
Sbjct: 167 NDMGEFVSLRLRFALNRRESGFISGLVVVLHDTTEQEKEERERRL--------------F 212

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
           ++ VSHE+RTPLT++  + E +     G L       +        N ++ +++DLL++S
Sbjct: 213 VSNVSHELRTPLTSVKSYLEAL---DEGALKEDIAPSFIKVSLDETNRMMRMISDLLNLS 269

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR-----ILIRTSFANNIPRILADLRS 703
           +I++    L  E  +    ++  ++   L  N+         I   +      I  D   
Sbjct: 270 RIDNQVTQLAVEMTNFTAFITSILNRFDLVKNQHTGTGKVYEIVRDYPITSVWIEIDNDK 329

Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
           + Q+  NIL+NAI ++P GG+I +    T   ++I+ + D G+G+   +L      F ++
Sbjct: 330 MTQVIENILNNAIKYSPDGGKITVRMKTTDT-QLIISISDQGLGIPKTDLPLIFDRFYRV 388

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             ++     GTGLGL +AK ++  + G  +  S   KG+   I+ P
Sbjct: 389 DKARSRAQGGTGLGLAIAKEIIKQHHGFIWAKSDYGKGSTFTIVLP 434


>gi|229004655|ref|ZP_04162392.1| hypothetical protein bmyco0002_16080 [Bacillus mycoides Rock1-4]
 gi|228756543|gb|EEM05851.1| hypothetical protein bmyco0002_16080 [Bacillus mycoides Rock1-4]
          Length = 638

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 102/558 (18%), Positives = 215/558 (38%), Gaps = 45/558 (8%)

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
           LP   D   I  +    K+    ++         +      +        ++     ++ 
Sbjct: 107 LPWPNDETIILFSLRPVKREGTVIE----VVGSTVDITKRKNAEDELKVTKDRLESFINH 162

Query: 329 CPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
                 ++   G++  AN ++  +  +   + +        L   P    N  ++ +   
Sbjct: 163 NVDAITIFDLDGHMIQANKAYEKIFGWSEKEILGKK-----LPCIPDFLMNETLEFIKNI 217

Query: 388 RSDRTCIAASARLHTIQ-WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
           ++         RL T++    +  + ++       +     +  +GI  +  + +  +R+
Sbjct: 218 KNTNIQDPVITRLETVRQRKDKTLIDVSLTVSPILDLRGNVIALSGICRDISERKQAERE 277

Query: 447 MEIEVMQL-------CSILEATSDGIAI--INREGI---ILSTNRAVSKLFGYPVEDILR 494
           +     QL        +++E  +D + +  +N +      +  N    K FGY  E +L 
Sbjct: 278 LHRLHQQLKDSEMKYRALIEQATDAVYVVELNEDQFPTGFIEVNPVGCKRFGYSREKLLS 337

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554
            PF   +      ++   + +I       TL+   +  T +       + +  L   + +
Sbjct: 338 MPFPSTV-PLDSPMVKRVIKKIREGQTSFTLQDEFVFPTGKTITTEFGVRVFNLNGKNVF 396

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E  + +  L  ++K+A             ++HEI  PLTA+ GF  ++K+  
Sbjct: 397 LSISRDITERLKTEELLRKSEKLAVV-----GQLATAIAHEINNPLTAMKGFMHLLKSSE 451

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                N +   Y + +      +  I N+ + ++K +     L  +   L+  + + + +
Sbjct: 452 -----NKKNEHYIDIVLSEIERIESITNEFMALAKPQ----TLEIKTNDLNVLMKQVVMI 502

Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-TS 733
           +Q  A    I I T F ++   IL +   +KQ+ +NIL NAI  T  GG+++I   +   
Sbjct: 503 LQPQAMMNNIQITTEFTSDTSFILCEGNQLKQVFINILKNAIEATAMGGEVLIQIEYIPD 562

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
             +V +R  D G G+    +    +PF        I+ +G GLGL +   M++ + GK  
Sbjct: 563 KNQVNIRFTDYGCGIEKDRIPYLGEPFY------SIKEDGIGLGLMICYKMIEKHQGKIL 616

Query: 794 IFSTPAKGTLIEIIFPLY 811
           I S   KGT I +  P+ 
Sbjct: 617 IESEVGKGTTINVNLPIS 634



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/266 (11%), Positives = 74/266 (27%), Gaps = 27/266 (10%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRL---CDVSDILHIDPNNHIGDL-LKRQNTWYG 145
           D  G++ + ++   K  G    +++G +L    D      ++   +I +  ++       
Sbjct: 171 DLDGHMIQANKAYEKIFGWSEKEILGKKLPCIPDFLMNETLEFIKNIKNTNIQDPVITRL 230

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +T     + T + V + ++  PI           G  I               RL ++  
Sbjct: 231 ETVRQRKDKTLIDVSLTVS--PILDLRGNVIALSG--ICRDISERKQAERELHRLHQQLK 286

Query: 206 HLHEIKKGHSSVEKEK---YDIFSQQSPPPHLRM-----------KNKVSSLT-EYYAHK 250
                 +       +     ++   Q P   + +           + K+ S+        
Sbjct: 287 DSEMKYRALIEQATDAVYVVELNEDQFPTGFIEVNPVGCKRFGYSREKLLSMPFPSTVPL 346

Query: 251 DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310
           D  +       +   ++S   Q++F        T +               +LS     +
Sbjct: 347 DSPMVKRVIKKIREGQTSFTLQDEFVFPTGKTITTEFGVRVFN--LNGKNVFLSISRDIT 404

Query: 311 LSAYFDEGENLTP--ETVDKCPIPFF 334
                +E    +     V +      
Sbjct: 405 ERLKTEELLRKSEKLAVVGQLATAIA 430


>gi|158334668|ref|YP_001515840.1| two-component sensor histidine kinase [Acaryochloris marina
           MBIC11017]
 gi|158304909|gb|ABW26526.1| two-component sensor histidine kinase, putative [Acaryochloris
           marina MBIC11017]
          Length = 546

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 78/405 (19%), Positives = 168/405 (41%), Gaps = 12/405 (2%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
             +            +E +  + +  ++ +     +  +++E  SD I +++ +GI+  +
Sbjct: 142 RVQERTAELTAVTVTLEKQIQERQKAEQALRHSESRFRAMIENASDLILLLDPQGIVHYS 201

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
           + +V +  GY   D+  +     L     S +   L E+L+   +  +        +   
Sbjct: 202 SPSVERNLGYLPTDLQGQSLVHLLHPQDQSSITQLLAEVLATPSKVAVPLEIRWQHQAGH 261

Query: 538 LLSLRIIIKKLPFSSCYSLTM---HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
             +L  + ++   ++ +S  +    DI+E ++ +  +  A +  ++ S  K  F +  SH
Sbjct: 262 WCTLEAMAQQFSDTTGFSGIVVNARDITERQKMEA-MQRALEQEQELSELKLRFFSMASH 320

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           E RTPL+ I+  ++++ +     L N +       I  S   +  ++ D+LDI+++E+ K
Sbjct: 321 EFRTPLSVILMAAQILGSSESQSLDNKQQRN-IERIHTSAQYLKKMLADILDIARLEAQK 379

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRI-LIRTSFANNIPRILADLRSVKQIALNILS 713
              +  PV +       +       +   I  IR ++      I  D    + I  N+L+
Sbjct: 380 REFNPRPVCVKTMCDRILDT--QQTSHGGIPRIRCAYTGLSAEIALDPDLFQSILNNLLA 437

Query: 714 NAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
           NA+ ++     + +  T   + ++ L + D G+G+      +  + F +  N      EG
Sbjct: 438 NALKYSAPEQLVQVKLTQELD-QIELMIIDQGIGIPKASQSQLFEAFHRGDN--VGEIEG 494

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
           +GLGL + K  VD + G     S    GT   +  P+    H  D
Sbjct: 495 SGLGLAIVKKCVDLHGGHLSFVSEA-SGTTFTVRLPIQTNRHQAD 538



 Score = 47.3 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 64/214 (29%), Gaps = 23/214 (10%)

Query: 29  KIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLD--SENTFVFDPIPRTVRFT 86
           +I N  E + +K E    ++  +    ++  E  + T  L+   +     +   R     
Sbjct: 118 RIRNQLEIQFAKAEIESLNAELEQRVQERTAELTAVTVTLEKQIQERQKAEQALRHSESR 177

Query: 87  WN------------IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG 134
           +             +D  G +   S  + + +G     + G  L  +         + I 
Sbjct: 178 FRAMIENASDLILLLDPQGIVHYSSPSVERNLGYLPTDLQGQSLVHLLHPQD---QSSIT 234

Query: 135 DLLKRQ-NTWYGKTTLWPIE-GTNLYVPIDLAALPIYSRNREFSGFRGFGI-VHVNRVDN 191
            LL     T         I           L A+     +   +GF G  +         
Sbjct: 235 QLLAEVLATPSKVAVPLEIRWQHQAGHWCTLEAMAQQFSD--TTGFSGIVVNARDITERQ 292

Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF 225
              A+ + L++    L E+K    S+   ++   
Sbjct: 293 KMEAMQRALEQ-EQELSELKLRFFSMASHEFRTP 325


>gi|145300269|ref|YP_001143110.1| aerobic respiration control sensor protein ArcB [Aeromonas
           salmonicida subsp. salmonicida A449]
 gi|142853041|gb|ABO91362.1| two-component system hybrid sensor histidine kinase/response
           regulator [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 770

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 91/440 (20%), Positives = 185/440 (42%), Gaps = 23/440 (5%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           +++  +   + R  +        L++ Q     S     I      +         +E E
Sbjct: 81  EDSRQRLTRMVRKLQDMRERDLELNS-QLQENISRLNAQIAETNRAETLRQQAIEDLENE 139

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
                  +  +      L S ++ + D +   N +      NRA+ +L G    +++   
Sbjct: 140 VFQREKAQLHLGERTALLRSFIDCSPDLVYYRNEDEQFSGCNRAMEELTGRVEAELIGLT 199

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CY 554
                +Q   + +     ++ + +   T E+        +    LR +     F      
Sbjct: 200 PFDVYKQEIANKVVETDKQVFTSNEPLTYEQWLEYPDGRKAYFELRKVPFFDRFGKRLGL 259

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E KQ ++KL       EK S  K+ F++ +SHE+RTPL  I+G S ++ +  
Sbjct: 260 LGFGRDITERKQYQDKL-------EKASRDKTTFISTISHELRTPLNGIVGLSRMLMDTP 312

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                +PR  +    I  S   + +I ND++D+ K++  ++ +   P+ L   + E  +L
Sbjct: 313 L----DPRQHQQLKTIHLSAVTLGNIFNDIIDLDKLDRRRLEIAPTPIDLPAFLDELETL 368

Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
            ++ A +K + +      ++P+ ++AD   ++Q+  N++ NA+ FT  GG + +     +
Sbjct: 369 SRIQAEQKGLYLHFDRDGDMPQFVMADGTRLRQVLWNLVGNAVKFTDEGG-VTVRCLSHA 427

Query: 734 NE-----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
            +      +   V DTGVG+   + EK    + Q+    +    GTG+GL +++ +V A 
Sbjct: 428 ADVPGKLALHFEVEDTGVGIPRAQQEKIFAMYYQVQG--KKHATGTGIGLAVSRQLVQAM 485

Query: 789 MGKFYIFSTPAKGTLIEIIF 808
            G+ Y+ S P +G+      
Sbjct: 486 GGQLYVDSDPGEGSCFTAEL 505



 Score = 41.9 bits (97), Expect = 0.42,   Method: Composition-based stats.
 Identities = 15/124 (12%), Positives = 34/124 (27%), Gaps = 5/124 (4%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTWYGKTTLWPIE 153
               +  + +  G    ++IG+   DV      +        +         +  L   +
Sbjct: 177 FSGCNRAMEELTGRVEAELIGLTPFDVYKQEIANKVVETDKQVFTSNEPLTYEQWLEYPD 236

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
           G   Y   +L  +P + R  +  G  GFG           +   ++  +  +        
Sbjct: 237 GRKAYF--ELRKVPFFDRFGKRLGLLGFG--RDITERKQYQDKLEKASRDKTTFISTISH 292

Query: 214 HSSV 217
               
Sbjct: 293 ELRT 296


>gi|325292298|ref|YP_004278162.1| two component sensor sensor histidine kinase [Agrobacterium sp.
           H13-3]
 gi|325060151|gb|ADY63842.1| two component sensor sensor histidine kinase [Agrobacterium sp.
           H13-3]
          Length = 514

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 102/356 (28%), Positives = 180/356 (50%), Gaps = 7/356 (1%)

Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL 519
                +  IN  G++   +    + F   ++      F  ++  +    +      +   
Sbjct: 112 QVPGLVLTINENGLVERVSGRDLETFPADLQACKGHVFAEYVYVSDRIELMQAFDLLRQG 171

Query: 520 DLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSH 573
           + + ++E    T   +++ + +  R+ +  +  ++         + D++E +  +  ++ 
Sbjct: 172 EEKSSVELRFETGAKSRQAQFIHARMEMTAIRNAAGRLRRVVAQLSDVTEMELLRRDVAR 231

Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
               AE  +  KS FLA VSHE+RTPL A++GFS+++  + FG L N R  EY   I +S
Sbjct: 232 KAAEAESANDAKSRFLAAVSHELRTPLNAVLGFSDILAGEYFGRLENDRQREYVGLIRQS 291

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693
           G  +L +VN +LD+SK+E+G+  L  E   + E +S   +++ L A EK + + +     
Sbjct: 292 GAHLLSVVNTMLDMSKLEAGRYELMMESFPIGETISSCEAMLGLQAKEKGLTLTSRIQRG 351

Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753
           I  I AD R+++Q+ +N+  NAI FT +GG + I         + L V DTG+G+ + ++
Sbjct: 352 IGEISADQRAIRQVLINLAGNAIKFTDAGGVVSIDAA-REGRMLKLTVSDTGIGIASDKI 410

Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           E   +PF Q+ N    R EGTGLGL L K +V  + G F I S P  GT++ I+ P
Sbjct: 411 ELLGQPFMQVQNEYTRRYEGTGLGLSLVKGLVALHGGTFAITSQPGAGTVVTIMLP 466


>gi|298528196|ref|ZP_07015600.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298511848|gb|EFI35750.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 1287

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 117/592 (19%), Positives = 203/592 (34%), Gaps = 95/592 (16%)

Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANP 346
               L+N+ K S E L               E       +  P   F     G +   N 
Sbjct: 302 RLRRLRNSLKNSNEELRMAVQKVSE-----SEETHRIIFENSPQGMFYLDASGIIVKCND 356

Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
            F+ L        I                  + I  ++                +I   
Sbjct: 357 QFVELMGSTREKLIG---------LNSAAESPSPIDDIIQRAMGGEQTVFEGLYTSITGG 407

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR--INKRKMEIEVMQL---------C 455
           + + L M   P    N             +    +      +++ ++ +L          
Sbjct: 408 KTSYLRMICNPV---NPGTSPTEVIATVEDITQRKHLEESVRLKNDLQELVTEVSTDFIN 464

Query: 456 SILEATSDG-------------------IAIINREGI------------ILSTNRAVSK- 483
           +  E   DG                   +   + +G+            I S N A+   
Sbjct: 465 ATWENI-DGKVNNMIRRCGQFLNVDRTFVFKFSEDGLYMSNTHEWCAPGIESVNAAMQDV 523

Query: 484 -LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE--EKLLS 540
            L   P    +     +    +   +      ++L     +++  + +    +       
Sbjct: 524 SLEELPANLEIFNERKMLFVPDVEQLPEGPEKQLLEAQDVKSMLVMPILRNDKILGTFGF 583

Query: 541 LRIIIKKLPFSSCYSL------TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
             +  K+L       L       + D       +  L  AK+ AE  +  KS+FLA +SH
Sbjct: 584 ESVSSKRLINEEHVQLLQILGNILGDALIRNSFERDLLQAKEQAEAATQAKSEFLANMSH 643

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           EIRTP+ AIIG S +          + R   Y   ID +   +L I+ND+LD SKIE+ K
Sbjct: 644 EIRTPMNAIIGISHLALRSGL----DRRQHSYLTRIDGAARSLLGIINDILDFSKIEANK 699

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILS 713
           + L   P +L + +S   S+    A EK++ +      + P  +  D   + Q+  N++S
Sbjct: 700 LELEHVPFNLKDVLSRLSSIFDFQAEEKQLKLTFQLDPDTPLSLKGDSMRLSQVLTNLIS 759

Query: 714 NAIHFTPSGGQIIISTTHTSNEE------------------VILRVRDTGVGMTNYELEK 755
           NAI FT S G+I++S +  ++                    ++  VRD+G GM   +  +
Sbjct: 760 NAIKFT-SHGEIVVSVSPGTSNTAHEAIPECLPAKGYNQVCLMFSVRDSGQGMDQDQASR 818

Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
               F Q  +S   R  GTGLGL ++K +V+   G   + S P +G+     
Sbjct: 819 LFDAFFQADSSITRRFGGTGLGLSISKQLVEMMGGSIQVQSQPGEGSTFSFT 870


>gi|215433425|gb|ACJ66678.1| sensory box histidine kinase [Myxococcus fulvus HW-1]
          Length = 723

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 102/745 (13%), Positives = 208/745 (27%), Gaps = 102/745 (13%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + +DA G L  +     +  G       G  L D            +            
Sbjct: 61  VFQLDAQGRLTVLGGAWERLTGTPVADWRGRALLDAIHAEDRARARAVL-AYTPDRPAPR 119

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +     + G      ++L+A  + +   E  G      +                ++   
Sbjct: 120 EEVRLDVGGGRGVRWVELSARALATVPGEVMG-----TLLDVTSRRSAEEAVTTRERYLE 174

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
            + ++++     E       +   P  H+   ++V     +      +L +++       
Sbjct: 175 AMVQVQRRMMGHELPDDLYGAVVEPLGHVSDASRVYVFEMHLGEDGALLASQRAEWCAPG 234

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
                E  + H +  N+  +      L        E +  +            E     +
Sbjct: 235 VPPNLEDPNMHGLPFNEALRPHQSEKLL-----RGEPVQGQPRDFTEMLAPMLEAQAVRS 289

Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
           V   P+       G + + N           V+ +  A G  +L    + ++   ++   
Sbjct: 290 VLLLPLHVHGQLFGVIGFDNCREPQRWGPIEVNLLSGAAGALSLALEQRTANALRMRTET 349

Query: 386 LYRSDRTCIAASARLHT---IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             R     +           +    +  L        +   F +     G    D+    
Sbjct: 350 TLRRTEAGVHLLIEAFPDPVLVHVGDGVLLSVNPALVQYLGFRDASELVGRHMLDLVRPE 409

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
           ++   ++    L   LE                          G     ++  P      
Sbjct: 410 DRGAAQL---HLSQALE--------------------------GKSAARVVEMPL----- 435

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
                        + S       + +TL    +                        D +
Sbjct: 436 -------------VRSDGEVVVADLVTLAVVLDGS--------------PARITVARDFT 468

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN-------QRF 615
           E K+ + +L    ++A           A ++HE+  PL  ++   + + +       +  
Sbjct: 469 ERKRTQAQLMLTDRMA-----SMGLLAAGIAHELNNPLAYVLSNLDFLHSAVGGTRPRML 523

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
            P       +  +        +  IV  L   S++E GK     E V +   +    S +
Sbjct: 524 SPEDLVELKQVLDDAREGAERMRQIVRQLRVFSRVEDGK----EESVDIHAVLESV-SQM 578

Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG----QIIISTTH 731
                  R  +   +   +P +  +   + Q+ LN+L NA H    G     +I ++T  
Sbjct: 579 AASVVRARARLVKDY-GEVPLVRGNEGKLFQVFLNLLINAAHAIEEGDSEANEIRLTTRM 637

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
                V + V DTG G+    L +   PF    +S    G GTGLGL +   +V A  G 
Sbjct: 638 EV-GRVTVVVSDTGQGIPPEHLRRIFDPFFTTKSS----GLGTGLGLSICDTIVTALGGH 692

Query: 792 FYIFSTPAKGTLIEIIFPLYDTSHP 816
             + S+   GT   +         P
Sbjct: 693 ISVESSVGAGTTFRVALSAAPPKAP 717



 Score = 67.4 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 20/191 (10%), Positives = 54/191 (28%), Gaps = 4/191 (2%)

Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465
             E   A                         +  R      ++E  +   + E   + +
Sbjct: 2   ADEQRDAAAVKDAPGKASGTVPADVACDLLSPMKPRAAHAGSQVESERFQHLSELLHEVV 61

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
             ++ +G +     A  +L G PV D   +     +     +     L         +  
Sbjct: 62  FQLDAQGRLTVLGGAWERLTGTPVADWRGRALLDAIHAEDRARARAVLAYTPDRPAPREE 121

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
            ++ +G  +  + + L               T+ D++  +  +  ++  ++  E     +
Sbjct: 122 VRLDVGGGRGVRWVELSARALATVPGE-VMGTLLDVTSRRSAEEAVTTRERYLEAMVQVQ 180

Query: 586 SDFLARVSHEI 596
                 + HE+
Sbjct: 181 RRM---MGHEL 188


>gi|83944133|ref|ZP_00956589.1| two-component hybrid sensor and regulator [Sulfitobacter sp. EE-36]
 gi|83845000|gb|EAP82881.1| two-component hybrid sensor and regulator [Sulfitobacter sp. EE-36]
          Length = 550

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 102/520 (19%), Positives = 187/520 (35%), Gaps = 40/520 (7%)

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIA 363
           ++       A  D+        +    +   V +   L   N   L  T Y   + I   
Sbjct: 57  ANVRATPARATVDDSVAQQLRVLKMHTMVNVVDTDNLLVEVNDLLLEATGYTRQELIGKP 116

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
             ++ L      +       +               L   +    ++           + 
Sbjct: 117 --VAMLYSKDNRT---TATEIRDLLRQGKSWQGETTL---RNRDGSTCVTQTTVTPLLDA 168

Query: 424 FPENMPQNGIEPEDVDTRI--NKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRA 480
               +       +   T     +R   + + +L        D I I++ +   +   N A
Sbjct: 169 NGRWIGSISARTDITSTTKLIARRDTAMTLHELR-------DDIWIVSEDNLELRYMNLA 221

Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY-LTEILSLDLRQTLEKITLGSTKEEKLL 539
               FG+       +       +     +    L  +   D   T      G+  E  + 
Sbjct: 222 AKARFGWSTRPKNGQTVRDMAAERGCEDVLDACLRMMDIGDTYMTFSATISGTNFEGSIK 281

Query: 540 SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
            L     K        + +HDI+E  +++                ++DF++ VSHE+R+P
Sbjct: 282 WLN----KGTVDGRLLIMLHDITERLEQE--------------QLQADFISMVSHELRSP 323

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           LT+I G   ++ ++  G L  P+         R+ + ++ I+ND+LD+ KI SG+++   
Sbjct: 324 LTSIKGSMGLLLSKAAGQLP-PKAEGLLEIAHRNADRLVLIINDILDMEKISSGRLDFEL 382

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719
           E   L E V+E++           + I+    +    I  D   + Q+  N++SNA  F+
Sbjct: 383 ETADLSELVAESLRANATAHQRFGLQIKCHGVDTPTYIETDANRIIQVLTNLMSNAAKFS 442

Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
             GG + IS   T    V + VRD G+G+   +  K  + F  + NS +    GTGLGL 
Sbjct: 443 KPGGTVEISVDKTPEN-VCVSVRDEGMGIAPEDQHKIFQRFADMANSDRATKGGTGLGLS 501

Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFPL-YDTSHPHD 818
           + KA+V+   G     S   +GT      P+    S P +
Sbjct: 502 ICKAIVEGLGGTIDFVSKEGRGTTFTFTLPVKTRHSGPEN 541



 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 51/143 (35%), Gaps = 8/143 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D    L E+++ L +  G    ++IG  +  +    +      I DLL++  +W G+TT
Sbjct: 88  VDTDNLLVEVNDLLLEATGYTRQELIGKPVAMLYSKDNRTTATEIRDLLRQGKSWQGETT 147

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           L   +G+       +   P+   N  + G          R D                LH
Sbjct: 148 LRNRDGSTCVTQTTV--TPLLDANGRWIGSI------SARTDITSTTKLIARRDTAMTLH 199

Query: 209 EIKKGHSSVEKEKYDIFSQQSPP 231
           E++     V ++  ++       
Sbjct: 200 ELRDDIWIVSEDNLELRYMNLAA 222


>gi|322804610|emb|CBZ02162.1| two-component sensor histidine kinase [Clostridium botulinum H04402
           065]
          Length = 615

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 90/397 (22%), Positives = 172/397 (43%), Gaps = 11/397 (2%)

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
           +  +   N+  N ++ +++  R  ++ +         ++  + D I +  R G I+  N 
Sbjct: 192 RQKEEEVNILANKLDQKEMQKRCMEQLLIKNENCYNLLIRNSKDAILVH-RYGKIIFANE 250

Query: 480 AVSKLFGYPVED-ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
            + ++ GY  E           + ++  + + + L  +        +         +EK 
Sbjct: 251 RLKQMLGYKKEYNFEDIDIKSLIPKDEYNTVKNKLENLY-YGSENVVNFQHNVINNKEKT 309

Query: 539 LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK------SDFLARV 592
           +                  +HD++   Q +      KK  E  +  +      ++FL+ +
Sbjct: 310 IQNTSTYVIYDGMPTIFSILHDVTSKIQVEKLEQDVKKNIELLNESREYNKLITEFLSNI 369

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHE++TPL  I    + + +     +   +  +Y   I ++   ++ ++N+LLD +K++S
Sbjct: 370 SHELKTPLNVIFTAVQ-LLDFYEKDVDYEKQDKYLKLIKQNCYRLMKLINNLLDTTKLDS 428

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712
           G + L+    ++   + E    V  YA  K I I          I  D   +++I LN+L
Sbjct: 429 GYLRLNLVNYNIVSLIEEITLSVTSYAESKGINIIFDTEMEERVIAVDTDKIERIILNLL 488

Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           SNAI FT  GG I ++   +    V + ++DTGVG+ + +LE   + F QI  + +   E
Sbjct: 489 SNAIKFTNPGGNIFVNIKDSEEN-VYVHIKDTGVGIPSDKLESIFERFFQIDKTLKKNKE 547

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GTG+GL L K+ V+ + G   I S   KGT   I  P
Sbjct: 548 GTGIGLHLVKSFVEMHNGTVTINSELGKGTEFIIKLP 584


>gi|254784466|ref|YP_003071894.1| PAS/PAC sensor hybrid histidine kinase [Teredinibacter turnerae
           T7901]
 gi|237686265|gb|ACR13529.1| PAS/PAC sensor hybrid histidine kinase [Teredinibacter turnerae
           T7901]
          Length = 781

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 73/267 (27%), Positives = 128/267 (47%), Gaps = 19/267 (7%)

Query: 557 TMHDISEWKQEKNKLSHAKKIAEK----------ESSHKSDFLARVSHEIRTPLTAIIGF 606
            + DI +  Q ++ L  AK+   +           +  KS F+A +SHEIRTP+  +IG 
Sbjct: 229 ILIDIKQQAQIEDALLAAKEEKIETRRMIERVKAANQAKSQFIATMSHEIRTPMNGVIGM 288

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
            E++++       N     Y + I RSG  +L+I+ND+LD SKIE+GKMNL      L+E
Sbjct: 289 IEMLRDTPL----NDSQKHYLDVIFRSGESLLEIINDILDYSKIEAGKMNLENVDFDLNE 344

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQI 725
            +++ + L     +++ I    + +   P ++  D   ++QI +N++ NA  FT +G  +
Sbjct: 345 LLNDCVQLFSATTHKRDIEFVCAISPETPTQLRGDPTRLRQIVVNLIGNAFKFTSNGHVM 404

Query: 726 IISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           ++  +          +   + D+G+G++        + F Q   S   R  GTGLGL + 
Sbjct: 405 VLVKSLQDRTSEHPLLRFSIVDSGIGISKEIQRNLFQAFNQADTSTTRRYGGTGLGLAIC 464

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIF 808
           K + +   G   + S   KG+      
Sbjct: 465 KQLAELMGGTIGVESEYGKGSTFWFTI 491


>gi|261856648|ref|YP_003263931.1| multi-sensor hybrid histidine kinase [Halothiobacillus neapolitanus
            c2]
 gi|261837117|gb|ACX96884.1| multi-sensor hybrid histidine kinase [Halothiobacillus neapolitanus
            c2]
          Length = 1167

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 118/827 (14%), Positives = 264/827 (31%), Gaps = 113/827 (13%)

Query: 88   NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNT-WYG 145
             ID  G ++  + +  +  G    ++IG  +  +         + ++   L  ++    G
Sbjct: 199  RIDKRGVIEAANPKSLELFGYTEPELIGRNVSMLMPEPWRSAHDGYLMQFLATRDAKVIG 258

Query: 146  KTTLW---PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
                      +G+     + ++ L I     +F GF     V       +     +R   
Sbjct: 259  IGRRVDGERKDGSRFPFNLAVSELRI-DGASQFVGF-----VSDVSEQVEAEHALERERA 312

Query: 203  KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL---TEYYAHKDDVLKTEKY 259
                + +      +      +     +    L  K   + L   +E +     +    + 
Sbjct: 313  LLRSVIDSSSNPIAAVNAANEFILLNTSFARLLAKPVEAVLGQKSELFLPPQAIKINRET 372

Query: 260  PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR------NHPSLSA 313
                    S         I       +     L++   +    ++        +  +   
Sbjct: 373  NARVWASGSSISTRTPIEIAGRMRVFETNKSPLRDERGKQIGVVTIAQDVSKLDRITSDL 432

Query: 314  YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
               +      E   +                +  F  L              +   +   
Sbjct: 433  MAMQQLRDMSERFGQSGSWAMDPLTDR-VNISAGFARLLGLAPETTHADREIIYERVHPD 491

Query: 374  KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
                           S+   I    R   ++    +   +      +  +  +     GI
Sbjct: 492  D--RAIIDAAFTQTLSEGQSIRFEYR---VRDAHGDWRYLRARGNAELAENGQVTQFVGI 546

Query: 434  EPEDVDTRINKRKMEIEVMQL-------CSILEATS-----------DGIAIINRE---- 471
              +  +    + KM+ +   L        S L   +           + +A+ + E    
Sbjct: 547  TQDVTEEVRAQEKMDAQQQLLSGLNKAVQSFLTTVAGDKNVWAQLLQELLAVTDAEFGFI 606

Query: 472  GIILS-------------TNRA-------------VSKLFGYPVEDILRKPFTVFLEQNT 505
            G +L              TN +                +     ++++ +          
Sbjct: 607  GEVLYGIESTPCLKIHAITNLSWSAESDALFERVMAGDMMFCNPDNLIGEVMKSRAPVIV 666

Query: 506  PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC------------ 553
            P +                   + +   + ++L+ +  +  +                  
Sbjct: 667  PELATDSRRGGFPPGHPLLSNYLGIPLFRGDELVGVLAVANRKAGVGHDLVDFLTPFTSS 726

Query: 554  ---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
                 +++    E  + +  L  +K+ A++ +  KS FL+ +SHE+RTPL AI+GF++++
Sbjct: 727  CAILIVSLRQQLERIKFEQALVESKQAADRANKAKSMFLSSMSHELRTPLNAILGFAQLM 786

Query: 611  KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
               R  PL   +   +  +I ++G  +L ++ND+L+++KIE+G+M L  E + L   + +
Sbjct: 787  AASRREPLT-EKQNGFVAHILKAGQHLLTLINDVLNLAKIEAGEMTLSPETLDLGVILRD 845

Query: 671  AISLVQLYANEKRILIRTSF-----ANNIPRILADLRSVKQIALNILSNAIHFTPS---- 721
            A+ +V   A    I +   F     +     I ADL   +Q+ LNIL+NAI +       
Sbjct: 846  ALDMVADNAASTGIALFNEFNGEHSSPEPLLICADLTRSRQVLLNILTNAIKYNRPRGSG 905

Query: 722  --------GGQIIIS---TTHTSNEEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
                    GG + +    +        +  L + DTG+G+   +  +  +PF ++   + 
Sbjct: 906  GPYSPDNLGGSVWVRRLPSYQNDAGNWMHGLAIEDTGMGIPAAQQHRLFRPFERL-GQEA 964

Query: 769  IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
               EGTG+GL + + +++   G+    S   KGT   + +P      
Sbjct: 965  GTIEGTGIGLLITRQLIELMQGRIDFESEEGKGTTFFVWWPAVREDQ 1011



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 56/423 (13%), Positives = 118/423 (27%), Gaps = 16/423 (3%)

Query: 170 SRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS 229
             + EF   R   IV                  +           S         F+Q  
Sbjct: 29  DESNEFY-LRKLKIVRRVFDVPIALIALTDAHFQRFKAVLGLDIESIERDLALCSFAQVP 87

Query: 230 PPPHLRMKNKVSSLTEYYAHK----DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTK 285
           P   L + + +  L    +        V       L+   + ++       T   +    
Sbjct: 88  PYGPLVIPDTLQDLRSKESELVTGHLGVRFYAGVALVLDGQFAVGTLCIMDTRPRSLSAD 147

Query: 286 KQYFGT--LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLF 342
           +Q        N ++     L    +  L              +    I    +   G + 
Sbjct: 148 EQILLKDFALNLTQVLQAKLDAERNTVLQKQSARVGLELNAILQTAAIGIIRIDKRGVIE 207

Query: 343 YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT 402
            ANP  L L  Y   + I     +S L+  P  S ++      L   D   I    R+  
Sbjct: 208 AANPKSLELFGYTEPELIGRN--VSMLMPEPWRSAHDGYLMQFLATRDAKVIGIGRRVDG 265

Query: 403 IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
            + +        F       +        G   +  +    +  +E E   L S+++++S
Sbjct: 266 ERKDGSRF---PFNLAVSELRIDGASQFVGFVSDVSEQVEAEHALERERALLRSVIDSSS 322

Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522
           + IA +N     +  N + ++L   PVE +L +   +FL      +       + +    
Sbjct: 323 NPIAAVNAANEFILLNTSFARLLAKPVEAVLGQKSELFLPPQAIKINRETNARVWASG-S 381

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEK 580
               +  +      ++        +              D+S+  +  + L   +++ + 
Sbjct: 382 SISTRTPIEIAGRMRVFETNKSPLRDERGKQIGVVTIAQDVSKLDRITSDLMAMQQLRDM 441

Query: 581 ESS 583
              
Sbjct: 442 SER 444



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 45/340 (13%), Positives = 107/340 (31%), Gaps = 38/340 (11%)

Query: 293 QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLT 352
           +    +    L   N  S   Y  +   +     D  PI     +  +       F  + 
Sbjct: 14  ETERLQVMRELEFLNDESNEFYLRK-LKIVRRVFD-VPIALIALTDAHF----QRFKAVL 67

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH-----TIQWNR 407
                         S     P            L   +   +     +       +  + 
Sbjct: 68  GLDIESIERDLALCSFAQVPPYGPLVIPDTLQDLRSKESELVTGHLGVRFYAGVALVLDG 127

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM------------QLC 455
           + ++    I   +      +      +     T++ + K++ E              +L 
Sbjct: 128 QFAVGTLCIMDTRPRSLSADEQILLKDFALNLTQVLQAKLDAERNTVLQKQSARVGLELN 187

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           +IL+  + GI  I++ G+I + N    +LFGY   +++ +  ++ + +   S  + YL +
Sbjct: 188 AILQTAAIGIIRIDKRGVIEAANPKSLELFGYTEPELIGRNVSMLMPEPWRSAHDGYLMQ 247

Query: 516 ILSLDLRQT--LEKITLGSTKEEKLLS--LRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571
            L+    +   + +   G  K+       L +   ++  +S +   + D+SE  + ++ L
Sbjct: 248 FLATRDAKVIGIGRRVDGERKDGSRFPFNLAVSELRIDGASQFVGFVSDVSEQVEAEHAL 307

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
              + +        S            P+ A+   +E I 
Sbjct: 308 ERERALLRSVIDSSS-----------NPIAAVNAANEFIL 336


>gi|78224663|ref|YP_386410.1| PAS/PAC sensor hybrid histidine kinase [Geobacter metallireducens
            GS-15]
 gi|78195918|gb|ABB33685.1| PAS/PAC sensor hybrid histidine kinase [Geobacter metallireducens
            GS-15]
          Length = 1465

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 105/816 (12%), Positives = 220/816 (26%), Gaps = 128/816 (15%)

Query: 86   TWNIDAHGYLKEISEELPKTIGNYAFKMIGMR--LCDVSDILHIDPNNHIGDLLKRQNTW 143
             W  ++ G +  +S    +  G    +       +  +      D      + +  +   
Sbjct: 403  VWR-NSDGTMAYVSPHCFQITGYTDAEFYADPGLMDRIIHPDDRDLWIEHKETVGTEIQA 461

Query: 144  YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                    +   N    +      ++    E  G RG               +       
Sbjct: 462  TPLEFRI-VTKANEVRWVSHFCRFVHDEAGELIGVRG--SFSDISAKKMALDVVIAQKNF 518

Query: 204  FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR------------------------MKNK 239
              +L         V   +  I         L                         + + 
Sbjct: 519  AENLISSATAPIFVLDSRNRILFWNKACEELTGYPAATMIGTDRQWQPFYCGRRPTLADV 578

Query: 240  VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
            +    E     +   K     L      +          N             +     +
Sbjct: 579  IIDCGEEATLSELYEKFSPSQLAKEGMQAEGWYLGLGGKNRYILFDAAPIRNAEGELVAA 638

Query: 300  FEYL-SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSV 357
             E      +           ++      ++ P   +         Y N ++L  T     
Sbjct: 639  IETFHDITDRQIAEDSVVLLKDFYLTLFEEFPALIWRSGTDAKCNYFNKTWLQFTGRSLE 698

Query: 358  DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
            +++                ++         R+  +    S   + ++ +  +   +    
Sbjct: 699  EELGGG------WAEGVHPEDLERCVSTYLRAFDSREPFSME-YRLRCHDGDYRWIVHTG 751

Query: 418  FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL---------------------CS 456
                          G+  +  D R    K+      L                       
Sbjct: 752  RPFQEPDGAFAGYIGVCYDITDRRRAAEKLRESQRDLAQKHKQLSTLFMEVEMAKKEWEQ 811

Query: 457  ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
             L+   D + + + EG I   NRAV +L G P +D+L + +   +           +   
Sbjct: 812  TLDCIGDLVILTDNEGHIRRCNRAVVELAGLPYQDVLGREWRSIVLSPE----MERIRFT 867

Query: 517  LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY---SLTMHDISEWKQEKNKLSH 573
                              E +     I   +    S      +T+HD +E K+    L  
Sbjct: 868  QEGG-------ELFHRLTE-RWFFCAIYPFRQKNESGMSGSVVTLHDTTELKKVGEALEK 919

Query: 574  AKKIAEKESSHK---------SDFLARVSHEIRTPLTAIIGFSEVI-------------K 611
            A    ++                  A V+HEI  P+  I+     +             +
Sbjct: 920  AYGELKEAQGQMLQREKMASIGQLAAGVAHEINNPIGFIMSNLGTLGKYLGRIREFIAAQ 979

Query: 612  NQRFGPLGNPRYIEYANYIDR--------------------SGNLVLDIVNDLLDISKIE 651
            ++    L      +      +                        V  IV DL   S+++
Sbjct: 980  DETIAELEGEAVSQRLAQAKKTLKIEYIMGDIDGLITESLDGAERVKKIVQDLKGFSRVD 1039

Query: 652  SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
              ++ +    V L E +   I++V      K   ++  +  ++P +  + + + Q+ +N+
Sbjct: 1040 EAEVKV----VDLRECLDSTINIVWNELKYK-ATLKKEY-GDVPPLRCNPQQLNQVFMNL 1093

Query: 712  LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
            L NA H   S G+I + T     E+  + + DTG G+      +  +PF          G
Sbjct: 1094 LVNAGHAIESQGEITVRT-WREGEDAFIAISDTGCGIPEEIRARIFEPFFTTK----EVG 1148

Query: 772  EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
            +GTGLGL ++  +V  + G+  + S   +GT   + 
Sbjct: 1149 KGTGLGLSISYDIVKKHGGEITVESEQGRGTTFTVR 1184



 Score = 65.0 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 41/434 (9%), Positives = 99/434 (22%), Gaps = 49/434 (11%)

Query: 70  SENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIG--MRLCDVSDILHI 127
           ++  F  + I       + +D+   +   ++   +  G  A  MIG   +          
Sbjct: 514 AQKNFAENLISSATAPIFVLDSRNRILFWNKACEELTGYPAATMIGTDRQWQPFYCGRRP 573

Query: 128 DPNNHI----GDLLKRQNTWYGKTTLWPIEGTNLYVP----------IDLAALPIYSRNR 173
              + I     +    +       +    EG                I   A PI +   
Sbjct: 574 TLADVIIDCGEEATLSELYEKFSPSQLAKEGMQAEGWYLGLGGKNRYILFDAAPIRNAEG 633

Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP--- 230
           E          H              L   +  L E                        
Sbjct: 634 ELVAA--IETFHDITDRQIAEDSVVLLKDFYLTLFEEFPALIWRSGTDAKCNYFNKTWLQ 691

Query: 231 PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT-SEESSLPEQEDFHTINLNQYTKKQYF 289
                ++ ++        H +D+ +     L           +      + +        
Sbjct: 692 FTGRSLEEELGGGWAEGVHPEDLERCVSTYLRAFDSREPFSMEYRLRCHDGDYRWIVHTG 751

Query: 290 GTLQNNSKESFEYLS----HRNHPSLSAYFDEGENLT---------------------PE 324
              Q        Y+       +    +    E +                         +
Sbjct: 752 RPFQEPDGAFAGYIGVCYDITDRRRAAEKLRESQRDLAQKHKQLSTLFMEVEMAKKEWEQ 811

Query: 325 TVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD-NNAIK 382
           T+D       +    G++   N + + L      D +        L    +         
Sbjct: 812 TLDCIGDLVILTDNEGHIRRCNRAVVELAGLPYQDVLGREWRSIVLSPEMERIRFTQEGG 871

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
            +    ++R    A         +  +   +T     +  +  E + +   E ++   ++
Sbjct: 872 ELFHRLTERWFFCAIYPFRQKNESGMSGSVVTLHDTTELKKVGEALEKAYGELKEAQGQM 931

Query: 443 NKRKMEIEVMQLCS 456
            +R+    + QL +
Sbjct: 932 LQREKMASIGQLAA 945



 Score = 58.1 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 27/289 (9%), Positives = 71/289 (24%), Gaps = 10/289 (3%)

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKY 354
           +S    E +    +          E        +       +        N S+ +   Y
Sbjct: 238 DSPRILETVPVGKNIGFERALQGFEGSMENVTSRGNRGITSFKRLR----NASWTIAAHY 293

Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
              +       +   L A  +        V+                 +    + S    
Sbjct: 294 PVDEAYAPVHAVKKYLLAALVGAILLSIFVVRLTMAYLTAPLLHFTRHVANLGDMSPKGR 353

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII 474
                  ++              ++ +  + +++        + + ++D     N +G +
Sbjct: 354 RFSAPSRDEIGTLAETFNAMVARLEKK--EEELKRSKELYQVVADFSTDMAVWRNSDGTM 411

Query: 475 LSTNRAVSKLFGYPVEDILRKP--FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
              +    ++ GY   +    P      +  +   +   +   + +      LE   +  
Sbjct: 412 AYVSPHCFQITGYTDAEFYADPGLMDRIIHPDDRDLWIEHKETVGTEIQATPLEFRIVTK 471

Query: 533 TKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAE 579
             E + +S                  +  DIS  K   + +   K  AE
Sbjct: 472 ANEVRWVSHFCRFVHDEAGELIGVRGSFSDISAKKMALDVVIAQKNFAE 520



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/237 (11%), Positives = 67/237 (28%), Gaps = 11/237 (4%)

Query: 290  GTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFL 349
            GT  +            N           +N    T         +    +      S  
Sbjct: 1190 GTDMDEQVRILCVDDEMNVLRSLGRMFLDDNYDILTASSAAEGLEILERESPVQIVISDY 1249

Query: 350  LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI------AASARLHTI 403
             +     VD +              LS       ++   ++               L   
Sbjct: 1250 RMPVMNGVDFLRKVCTQWPDTVRIVLSGYADTAAIVAAINEGQIYKFVPKPWTDDELRVT 1309

Query: 404  QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR--KMEIEVMQLCS---IL 458
              N      +     +  ++   +  +  +  E+++  + +R  ++      L +   IL
Sbjct: 1310 VINALEKYQLQKHNAKLLDELSRSNEELVLMNENLEAIVAERTEEVLFRNRALSAAQNIL 1369

Query: 459  EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
            +A   G+  ++ EG ++  NR+ ++L G     ++ +     L     + ++    E
Sbjct: 1370 DALPVGVLGMDTEGTVVQCNRSAARLLGLDEYAVVGRGAAEALSPEICAFIDELARE 1426


>gi|285018412|ref|YP_003376123.1| two-component system sensor protein [Xanthomonas albilineans GPE
            PC73]
 gi|283473630|emb|CBA16133.1| putative two-component system sensor protein [Xanthomonas
            albilineans]
          Length = 1310

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 116/690 (16%), Positives = 230/690 (33%), Gaps = 71/690 (10%)

Query: 184  VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVS 241
               +      +A     + +   L +              +                +  
Sbjct: 465  CWESMERASAQAELASSEARLRELADAMPQIVFTTMPDGQVDYFNKRWYEYTGLPVGETG 524

Query: 242  SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ--EDFHTINLNQYTKKQYFGTLQNNSKES 299
              +    H ++ L         +  S  P +        + N          +++ + + 
Sbjct: 525  YDSWRKVHTEEGLARMMQVWPEALRSGEPYEIEYPLRRHDGNYRWHLGRALAIRDEAGQI 584

Query: 300  FEYLS----HRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKY 354
              ++       +   +     E E       D  P+  ++  + G+  Y +  + L T  
Sbjct: 585  VRWIGTNTDIHDRRMVEQRLQESELRFRNLCDNAPVMIWMSNADGDYEYISRQWYLYTGQ 644

Query: 355  KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
               + +  AG L  +            + +    +DR       RL   + +        
Sbjct: 645  SEQEAL-GAGWLEKIHVDDV---AATGRMLARASNDRRAYTIEYRL---RRHDGEYRWCV 697

Query: 415  FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI---------LEATSDGI 465
                 + +   + +   G   +  + +  +     E   L  I         LEA + GI
Sbjct: 698  DTATPRFSSSGQFLGFIGSLMDIAERKRIEHATAAERSALEMITTGKPLNVVLEAIAHGI 757

Query: 466  ------------AIINREGIILSTNRA---------VSKLFGYPVEDILRKPFTVFLE-- 502
                         +++     L    A                    +            
Sbjct: 758  EAQSDVGLRCTIMLVDEHQQCLLEGAAPSMPAGFRKAIHRLPIDANTVSCGRAVHLRRQV 817

Query: 503  ----QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE-KLLSLRIIIKKLPFSSCY--- 554
                    +   HYLT  +  D+        + S  +    ++L       P +      
Sbjct: 818  LCSDIRLDAHWQHYLTVAVEADIVACCSTPIIASDGDVLGSVALYFPFVHYPNAHEQELA 877

Query: 555  --------SLTMHDISEWK--QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
                     +     ++ +  Q  +   +A+  AE+ S  K +FLA +SHE+RTPL AI+
Sbjct: 878  RSASRLAGIIIERRKTDLRLQQLLDAEQNARSEAERASRMKDEFLATLSHELRTPLNAIL 937

Query: 605  GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
            G++ +++ +    +      +    I+RS +    I++DLLD+S I SGK+ L    + L
Sbjct: 938  GWARLMQQE--TEVLEKDISKGLQVIERSAHTQAQIIDDLLDMSAILSGKVRLEPTELDL 995

Query: 665  DEAVSEAISLVQLYANEKRILIRTSFANN-IPRILADLRSVKQIALNILSNAIHFTPSGG 723
               + E I   +  A +K + I     +  +P  L D   ++Q+  N++ NAI FTPS G
Sbjct: 996  RTLIGETIDSARPSAEDKGVDIVLVADSTPLPPYLGDTVRLQQVLTNLIGNAIKFTPSTG 1055

Query: 724  QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
            +I ++ +  S+  + + V DTG+G+    L      F Q   S      G GLGL +AK 
Sbjct: 1056 KITVTLS-NSSTHMRIEVSDTGLGIEPLFLPHVFDRFSQADASSTRSAGGLGLGLSIAKQ 1114

Query: 784  MVDANMGKFYIFS-TPAKGTLIEIIFPLYD 812
            + + + G+  + S     G+   ++ P  D
Sbjct: 1115 LTELHHGQLSVISDGLGLGSTFTLLLPRND 1144



 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 67/612 (10%), Positives = 169/612 (27%), Gaps = 76/612 (12%)

Query: 42  ENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRT-VRFTWNIDAHGYLKEISE 100
           E+  H +  +   T  +   V  T   D+   F   P     +R          ++ ++ 
Sbjct: 165 EDTVHTTQPREGDTLLSDLDVQRTQMADA---FEQSPTALAILR-----GPDYVVESVNP 216

Query: 101 ELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD-LLKRQNTWYGKT----TLWPIEGT 155
              + IG    +++G  L +    +H      + D +      + GK+          G 
Sbjct: 217 RYQELIGPR--ELVGRPLAEAIPEIHQQGFLQLLDTVRASGMPFTGKSMTFNLRRTAHGA 274

Query: 156 NLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP-RALGKRLDKKFSHLHEIKKGH 214
                +D    P+   + + +     GI    ++ + P  +    L+    +L   +   
Sbjct: 275 MSETNVDCIYHPMRDADGKVTRVLVHGIDRTEQIRSQPHDSFLLMLEDTLQNLDNAEAIC 334

Query: 215 SSVEKEKYDIFSQQSPPPHLRMKNKV-----SSLTEYYAHKDDV------------LKTE 257
            +                 +   ++      +   +  AH+                  E
Sbjct: 335 ETGAAMLGQHLRANRCAYAIVAPDEDTFDVRADYVDGAAHRTGRSCLSEFGSDLLDCLRE 394

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN---------- 307
             P + ++  S         ++  +   +       + +      +S             
Sbjct: 395 NRPWVVADTRSHTPPLRLDDLDQRRLELRAVLTAPLHKAGRLVAMISVHQTYPRVWTPAE 454

Query: 308 ----------------HPSLSAYFDEGENLTPETVDKCPIPFFVY-SHGNLFYANPSFLL 350
                             S  A     E    E  D  P   F     G + Y N  +  
Sbjct: 455 IELVRLVAARCWESMERASAQAELASSEARLRELADAMPQIVFTTMPDGQVDYFNKRWYE 514

Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
            T       +   G  S      +      ++                  + ++ +  N 
Sbjct: 515 YTGLP----VGETGYDSWRKVHTEEGLARMMQVWPEALRSGEPYEIE---YPLRRHDGNY 567

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470
                      ++  + +   G   +  D R+ +++++   ++  ++ +     I + N 
Sbjct: 568 RWHLGRALAIRDEAGQIVRWIGTNTDIHDRRMVEQRLQESELRFRNLCDNAPVMIWMSNA 627

Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530
           +G     +R      G   ++ L   +   +  +  +     L    +     T+     
Sbjct: 628 DGDYEYISRQWYLYTGQSEQEALGAGWLEKIHVDDVAATGRMLARASNDRRAYTI--EYR 685

Query: 531 GSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK- 585
               + +             SS     +  ++ DI+E K+ ++  +  +   E  ++ K 
Sbjct: 686 LRRHDGEYRWCVDTATPRFSSSGQFLGFIGSLMDIAERKRIEHATAAERSALEMITTGKP 745

Query: 586 -SDFLARVSHEI 596
            +  L  ++H I
Sbjct: 746 LNVVLEAIAHGI 757



 Score =  110 bits (276), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 49/540 (9%), Positives = 117/540 (21%), Gaps = 62/540 (11%)

Query: 96  KEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN-TWY-GKTTLWPIE 153
           +  ++     +G       G    +V   +    N     +      TW           
Sbjct: 75  RLYNDAYIPLLGLRHPAAFGRPAEEVWPNVWPAVNAQAEQVFATGQSTWNAHMPLTVLRN 134

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
           G +  V    +  P+Y  N +  G     +   + V       G  L             
Sbjct: 135 GYSEQVYFTFSHSPLYDDNGDIGGV--LCVCMEDTVHTTQPREGDTLLSDLDVQRTQMAD 192

Query: 214 HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT----EKYPLLTSEESSL 269
                     I                  +         + +      +   L   ++  
Sbjct: 193 AFEQSPTALAILRGPDYVVESVNPRYQELIGPRELVGRPLAEAIPEIHQQGFLQLLDTVR 252

Query: 270 PEQEDFHTINLNQYTKKQYFG------------TLQNNSKESFEYLSHRNHPSL---SAY 314
                F   ++    ++   G             +++   +    L H    +    S  
Sbjct: 253 ASGMPFTGKSMTFNLRRTAHGAMSETNVDCIYHPMRDADGKVTRVLVHGIDRTEQIRSQP 312

Query: 315 FDEGENLTPETVDKCPIPFFVYSH-----GNLFYANPSFLLL------------------ 351
            D    +  +T+        +        G    AN     +                  
Sbjct: 313 HDSFLLMLEDTLQNLDNAEAICETGAAMLGQHLRANRCAYAIVAPDEDTFDVRADYVDGA 372

Query: 352 ---TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL---HTIQW 405
              T    + +           + P +  +       L   D        R      +  
Sbjct: 373 AHRTGRSCLSEFGSDLLDCLRENRPWVVADTRSHTPPLRLDDLDQRRLELRAVLTAPLHK 432

Query: 406 NRENSLAMTFIPFEKANQFPE----NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
                  ++          P              E ++    + ++     +L  + +A 
Sbjct: 433 AGRLVAMISVHQTYPRVWTPAEIELVRLVAARCWESMERASAQAELASSEARLRELADAM 492

Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
              +     +G +   N+   +  G PV +     +     +   + M     E L    
Sbjct: 493 PQIVFTTMPDGQVDYFNKRWYEYTGLPVGETGYDSWRKVHTEEGLARMMQVWPEALRSGE 552

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKI 577
               E        +            +   +     +  T  DI + +  + +L  ++  
Sbjct: 553 P--YEIEYPLRRHDGNYRWHLGRALAIRDEAGQIVRWIGTNTDIHDRRMVEQRLQESELR 610


>gi|87199632|ref|YP_496889.1| PAS/PAC sensor signal transduction histidine kinase
           [Novosphingobium aromaticivorans DSM 12444]
 gi|87135313|gb|ABD26055.1| PAS/PAC sensor signal transduction histidine kinase
           [Novosphingobium aromaticivorans DSM 12444]
          Length = 608

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 90/598 (15%), Positives = 194/598 (32%), Gaps = 35/598 (5%)

Query: 237 KNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS 296
            + V  L               +    + E+     + +   + +    +          
Sbjct: 30  ADVVGRLHYDVFPDISDTWRAIHQRALAGETLSSRLDRYERADGSSDWVQWNIQPWHTGK 89

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP------FFVYSHGNLFYANPSFLL 350
            +    +      +     D  ++L    +D           F +   G +   N     
Sbjct: 90  GDIGGVVMFARVVTNEIEADHQKHLLGRELDMLIDGAVDYAIFMLDEAGRVSLWNRGAER 149

Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
           LT +   D          L       D +A  P++  R      +   R    + +  ++
Sbjct: 150 LTGWCQADI--AQSHYEKLFVQA---DIDAALPILQLRMAEIVNSYRGRHFIARRD--ST 202

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470
           + +  +                +  +        R+ E    QL +IL+   D + +I+ 
Sbjct: 203 VILADVILTPIRSEGRLTGFGVVLRDVTGEMEKAREAEAREAQLRAILDTVPDAMVVIDE 262

Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KI 528
           +G I S +    K+FGY  +++L +   + +     S  + +L       +R+ +   + 
Sbjct: 263 DGSIRSFSATAEKMFGYTAQEVLGQNVAMLMPAPDSSRHSDFLRSYRETGIRRIMGQTRR 322

Query: 529 TLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEKESS--H 584
             G  K+       + I +        ++  + D++E ++ + +L   +    + S    
Sbjct: 323 VFGRRKDGTTFPHELTIGEAMGGGRRLFTGFLRDLTEREEAEEQLRQLQAELVRISRISA 382

Query: 585 KSDFLARVSHEIRTPLTAIIGF---SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
                  ++HE+  PLTAI  +   S  +     G        E      +       IV
Sbjct: 383 VGTMATALAHELNQPLTAIANYVLTSATLLADP-GEDTIEIVREALEEAGQEAVRAGAIV 441

Query: 642 NDLLDI-SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILAD 700
             L    S+ E     L     S     +E ++L  L    + + +  +    +  +L D
Sbjct: 442 QRLRAFVSRGE-----LDRTIESPAILAAETLALSGLAGRRRHVSVEVAVPRTLGEVLVD 496

Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760
              ++Q+ LN++ NA       GQI +     +   +   + D G G+         +PF
Sbjct: 497 KIQIQQVLLNLVRNAFEALEGQGQIRVGAREIAGGMLQFTIEDDGPGIDPEHQADLFEPF 556

Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
                    +  G G+GL + + +V+++ GK +       GT      P    +  +D
Sbjct: 557 V------STKENGMGIGLAICRTIVESHGGKLWHEMRNDGGTAFHFTIPTIRGALEND 608



 Score = 76.2 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/373 (8%), Positives = 90/373 (24%), Gaps = 15/373 (4%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D        S+            ++G    DV   +           L  +         
Sbjct: 9   DREMRYIACSQLWLSEHRMAEADVVGRLHYDVFPDISDTWRAIHQRALAGETLSSRLDRY 68

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFG--IVHVNRVDNDPRALGKRLDKKFSHL 207
              +G++    +     P ++   +  G   F   + +    D+    LG+ LD      
Sbjct: 69  ERADGSSD--WVQWNIQPWHTGKGDIGGVVMFARVVTNEIEADHQKHLLGRELDMLIDGA 126

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS--LTEYYAHKDDVLKTEKYPLLTSE 265
            +                            +   S     +     D         +   
Sbjct: 127 VDYAIFMLDEAGRVSLWNRGAERLTGWCQADIAQSHYEKLFVQADIDAALPILQLRMAEI 186

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL---SAYFDEGENLT 322
            +S   +      +            +++  + +   +  R+       +   +  E   
Sbjct: 187 VNSYRGRHFIARRDSTVILADVILTPIRSEGRLTGFGVVLRDVTGEMEKAREAEAREAQL 246

Query: 323 PETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
              +D  P     +   G++   + +   +  Y + + +     ++ L+ AP  S ++  
Sbjct: 247 RAILDTVPDAMVVIDEDGSIRSFSATAEKMFGYTAQEVLGQN--VAMLMPAPDSSRHSDF 304

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
                    R  +  + R+   + +                         G   +  +  
Sbjct: 305 LRSYRETGIRRIMGQTRRVFGRRKDGTTF---PHELTIGEAMGGGRRLFTGFLRDLTERE 361

Query: 442 INKRKMEIEVMQL 454
             + ++     +L
Sbjct: 362 EAEEQLRQLQAEL 374



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/469 (8%), Positives = 110/469 (23%), Gaps = 22/469 (4%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + +D  G +   +    +  G     +       +     ID    I  L   +     
Sbjct: 131 IFMLDEAGRVSLWNRGAERLTGWCQADIAQSHYEKLFVQADIDAALPILQLRMAEIVNSY 190

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIV-HVNRVDNDPRALGKRLDKKF 204
           +   +     +  +  D+   PI S  R      GFG+V      + +     +  + + 
Sbjct: 191 RGRHFIARRDSTVILADVILTPIRSEGR----LTGFGVVLRDVTGEMEKAREAEAREAQL 246

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLKTE---K 258
             + +       V  E   I S  +          +  +           D  +     +
Sbjct: 247 RAILDTVPDAMVVIDEDGSIRSFSATAEKMFGYTAQEVLGQNVAMLMPAPDSSRHSDFLR 306

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
               T     + +         +  T        +        +       +     +E 
Sbjct: 307 SYRETGIRRIMGQTRRVFGRRKDGTTFPHELTIGEAMGGGRRLFTGFLRDLTEREEAEEQ 366

Query: 319 ENLTPETVDKCPIPFFVYSHGNLFYA--NPSFLLLTKYK-SVDDIEIAGGLSTLLDAPKL 375
                  + +      V +         N     +  Y  +   +    G  T+    + 
Sbjct: 367 LRQLQAELVRISRISAVGTMATALAHELNQPLTAIANYVLTSATLLADPGEDTIEIVREA 426

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
            +    + V      +   A  +R    +     ++                     +  
Sbjct: 427 LEEAGQEAVRAGAIVQRLRAFVSRGELDRTIESPAILAAETLALSGLAGRRRHVSVEVAV 486

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
                 +   K++I+ + L +++    +    +  +G I        ++ G  +     +
Sbjct: 487 PRTLGEVLVDKIQIQQVLL-NLVRNAFEA---LEGQGQIRV---GAREIAG-GMLQFTIE 538

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
                ++    + +           +   L             L   + 
Sbjct: 539 DDGPGIDPEHQADLFEPFVSTKENGMGIGLAICRTIVESHGGKLWHEMR 587



 Score = 38.5 bits (88), Expect = 4.9,   Method: Composition-based stats.
 Identities = 9/120 (7%), Positives = 35/120 (29%), Gaps = 3/120 (2%)

Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520
               +A+ +RE   ++ ++           D++ +         + +    +   +    
Sbjct: 1   MPVAVAVFDREMRYIACSQLWLSEHRMAEADVVGRLHYDVFPDISDTWRAIHQRALAGET 60

Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
           L   L++       +     ++  I+           +   +     + +  H K +  +
Sbjct: 61  LSSRLDR---YERADGSSDWVQWNIQPWHTGKGDIGGVVMFARVVTNEIEADHQKHLLGR 117


>gi|33861897|ref|NP_893458.1| two-component sensor histidine kinase [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
 gi|33640265|emb|CAE19800.1| two-component sensor histidine kinase [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
          Length = 689

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 79/393 (20%), Positives = 173/393 (44%), Gaps = 40/393 (10%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            +++   ++  S++   +DG  +++ +G I+ TN    +LF +    +  K     + + 
Sbjct: 290 EELKAAQIKQQSLIATMADGAILLDSKGKIVLTNPTAKRLFRWEGRFLEGKYLLNEIPEI 349

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEE-KLLSLRIIIKKLPFSSCYSLTMHDISE 563
             + ++  +  IL  +      + +LG      +++   ++          ++T+ D++ 
Sbjct: 350 LSNDLHTNIESILKREKENDDLRCSLGEPARTLRIVLQSVLDTNKVELKGIAVTIQDLTR 409

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
                           + ++ ++ F++ VSHE+RTPL  I  + E + + +   L N   
Sbjct: 410 --------------EVELNAAQNRFISNVSHELRTPLFNIKSYVETLYDLK-DQLSNEEQ 454

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
           +E+    +   + +  +VND+LD+S++ESGK+ +  EP+ +  A+ + +   +L A EK 
Sbjct: 455 LEFLGIANSETDRLTRLVNDVLDLSRLESGKI-IQLEPMEIKPAIEQTLRNYRLNATEKN 513

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-------- 735
           + +      NIP IL +   + Q+  N+L N + F+P    + I      +         
Sbjct: 514 VSLAHDIEENIPSILGNFDLLLQVFDNLLGNGLKFSPKNSTLKIRAYTWPDSCPAFPPNN 573

Query: 736 --------------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
                         +V + + D G G++  + EK    F ++ N+     +GTGLGL + 
Sbjct: 574 NKDAPQCELVSPLPKVRIEIADNGSGISQPDQEKIFDRFYRVENAV-HTEQGTGLGLSIV 632

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           + +++ + G+  + S    GT      PL  + 
Sbjct: 633 RGIIEKHGGQIRMASELGIGTTFWFDLPLEQSD 665


>gi|329298019|ref|ZP_08255355.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Plautia stali symbiont]
          Length = 950

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 93/373 (24%), Positives = 159/373 (42%), Gaps = 29/373 (7%)

Query: 446 KMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           ++E         + +   GI I+   +G  + +N                  +   L Q 
Sbjct: 353 RLEEHEQFNRKTVASAPVGICILRTSDGTNILSNELA-------------HNYLTLLTQE 399

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564
               +N  +        +          T     L +  +  +    +     + D+S  
Sbjct: 400 DRLRLNEII-----GGQQVNF---VDMLTGSNTNLQISFVHSRYRNENVAICVLVDVSAR 451

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
            + +  L      AE+ S  KS FLA VSHE+RTPL  IIG  ++++ +      +    
Sbjct: 452 VRMEQSLQEMAHAAEQASQSKSMFLATVSHELRTPLYGIIGNLDMLQTKSLPKGVDS--- 508

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
                ++ S +L+L I++D+LD SKIES ++ +   P S  E V+   S        KR+
Sbjct: 509 -LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEQRPFSPREVVNHIASNYLSLVVRKRL 567

Query: 685 LIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
            +     N++P  L  D   ++Q+  N+L+NAI FT +G   II   +     +  RVRD
Sbjct: 568 TLYVFIENDVPLALDGDPLRLQQVISNLLNNAIKFTHTGC--IILHAYVKEGYLAFRVRD 625

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TGVG+   E+ +   PF Q+ +  Q   +GTGLGL + + +++   G   + S P  G+ 
Sbjct: 626 TGVGIPAKEITRLFDPFFQVGSGVQRNFQGTGLGLAICEKLINMMDGDIEVDSEPGMGSQ 685

Query: 804 IEIIFPLYDTSHP 816
             +  P+Y    P
Sbjct: 686 FVVRIPIYAGQQP 698


>gi|237510628|ref|ZP_04523343.1| sensory box histidine kinase [Burkholderia pseudomallei MSHR346]
 gi|235002833|gb|EEP52257.1| sensory box histidine kinase [Burkholderia pseudomallei MSHR346]
          Length = 723

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 94/616 (15%), Positives = 207/616 (33%), Gaps = 29/616 (4%)

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
           +   L  ++      + E       +        +  VSS           +   +    
Sbjct: 111 QQQRLATLRMLLEKKQHELAATIELRKTEGFDAAQAIVSSDAGKIFMDRARVMVNEMEAT 170

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD---EGE 319
             ++     ++                G L      SF Y+  R     +A      E  
Sbjct: 171 V-QQQLRTLRDRARATRDIAIGVGLASGLLTLAVCVSFGYVMRRLLLVEAAAAHDLFEQR 229

Query: 320 NLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
            L   T+             G + + N     +T   +   +        L+     +  
Sbjct: 230 ELLHVTLASIGDGVIATDVGGRITFFNRVAEEMTALCADAVVGQPIE-RVLMFRHATTQR 288

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
               P  +    R   +  A    +  +    L +        +   + +    I  +  
Sbjct: 289 VIDNPARVAVERRRTASLPAHTRFVGRSGGE-LPVDGNAAPTFDANGKLVGAVLIVRDVS 347

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
           +    + +  +        +EA    + ++ R+G I+  N    KLFGY   D++     
Sbjct: 348 ERERAEERFRLA-------VEAAPTAMIMVGRDGRIVLVNSQAEKLFGYARGDMIGHGID 400

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556
           + + +   +    +          + +   +   G  ++     + I +  +  S    +
Sbjct: 401 MLVPERFRAGHWAHRDAFFGSPDARPMGEGRDLFGLRRDGSEFPVEIGLNPITTSEGAFV 460

Query: 557 T--MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
              + DI+  K+ + +L    +   + +     F    SH+++ PL A+ G  ++++ + 
Sbjct: 461 LCSIADITARKRAELELRRRSEELARSNQDLEQFAYVASHDLQEPLRAVAGPLQLLQRRY 520

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
            G L + R  E+  +       +  +++DLL  S++  G++     PV  +  + EA+  
Sbjct: 521 QGQL-DARADEFIGHAVDGATRMQSLIDDLLSYSRV--GRLEDARRPVDCEHVLDEALRN 577

Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG--GQIIISTTHT 732
           +     E    +       +P +      +  +  N++ NAI F       +I +     
Sbjct: 578 LSAAIRESGAQVTHD---PLPTVHGIEAQLVLLFQNLIGNAIKFRGKDRVARIHLEAHPR 634

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
            +  + LRVRD G+G+     E+    F ++    +    GTGLGL L K +V+ + G+ 
Sbjct: 635 DDAWL-LRVRDNGIGIDPQYFERIFLIFQRLH--TRREYPGTGLGLALCKRIVEHHGGRI 691

Query: 793 YIFSTPAKGTLIEIIF 808
           ++ S P +GT      
Sbjct: 692 FVESEPGQGTTFSFTL 707



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/308 (9%), Positives = 68/308 (22%), Gaps = 25/308 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI----GDLLKRQNTWY 144
            D  G +   +    +     A  ++G  +  V    H      I       ++R+ T  
Sbjct: 246 TDVGGRITFFNRVAEEMTALCADAVVGQPIERVLMFRHATTQRVIDNPARVAVERRRTAS 305

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNR---VDNDPRALGKRLD 201
                  +  +   +P+D  A P +  N +  G     IV          +   L     
Sbjct: 306 LPAHTRFVGRSGGELPVDGNAAPTFDANGKLVGA--VLIVRDVSERERAEERFRLAVEAA 363

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
                +         V  +   +F            + +        H          P 
Sbjct: 364 PTAMIMVGRDGRIVLVNSQAEKLFGYARGDMIGHGIDMLVPERFRAGHWAHRDAFFGSPD 423

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
                            + +++  +     +  +       L      +     +     
Sbjct: 424 ARPMGEGR--DLFGLRRDGSEFPVEIGLNPITTSEGAF--VLCSIADITARKRAELELRR 479

Query: 322 TPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
             E + +                   F  +  +   + +    G   LL        +A 
Sbjct: 480 RSEELARSNQDL------------EQFAYVASHDLQEPLRAVAGPLQLLQRRYQGQLDAR 527

Query: 382 KPVMLYRS 389
               +  +
Sbjct: 528 ADEFIGHA 535



 Score = 48.9 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/243 (8%), Positives = 60/243 (24%), Gaps = 12/243 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL----KRQNTWY 144
           +   G +  ++ +  K  G     MIG  +  +        +    D        +    
Sbjct: 370 VGRDGRIVLVNSQAEKLFGYARGDMIGHGIDMLVPERFRAGHWAHRDAFFGSPDARPMGE 429

Query: 145 GKTTL-WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
           G+       +G+    P+++   PI +    F        +             +R  ++
Sbjct: 430 GRDLFGLRRDGS--EFPVEIGLNPITTSEGAFV----LCSIADITARKRAELELRRRSEE 483

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
            +  ++  +  + V         +    P   ++ +     +  A +      +    + 
Sbjct: 484 LARSNQDLEQFAYVASHDLQEPLRAVAGPLQLLQRRYQGQLDARADEFIGHAVDGATRMQ 543

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
           S    L        +   +         L    +     +                 +  
Sbjct: 544 SLIDDLLSYSRVGRLEDARRPVDCEH-VLDEALRNLSAAIRESGAQVTHDPLPTVHGIEA 602

Query: 324 ETV 326
           + V
Sbjct: 603 QLV 605


>gi|237746159|ref|ZP_04576639.1| two-component system sensor histidine kinase [Oxalobacter
           formigenes HOxBLS]
 gi|229377510|gb|EEO27601.1| two-component system sensor histidine kinase [Oxalobacter
           formigenes HOxBLS]
          Length = 1090

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 119/667 (17%), Positives = 223/667 (33%), Gaps = 55/667 (8%)

Query: 185 HVNRVDNDPRALGKRLDKKFSHL--HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS 242
            +         L          +   + K     +      +   +S   +    N  + 
Sbjct: 151 RLLSEKEQQIELMLHQLPGGMMVCYPDEKFTTKWISDGLCRMLGYESAAAYRAAVNSCAG 210

Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTK---KQYFGTLQNNSKES 299
                   D V   ++     +   S   +      +          + F  + N +  S
Sbjct: 211 F---IHPDDFVEMRDRVSASLASGDSYSGEYRIVRPDGGVRWVLDLGKRFTDVDNETVVS 267

Query: 300 FEYLSHRNHPSLSAYFDEGEN-------LTPETVDKCPIPFF---VYSHGNLFYANPSFL 349
                           ++             +  +  P         S   +  AN S  
Sbjct: 268 CFITDITERVEREVALEKANRNISRQAAFLSQLYNTVPCGIVQISTDSAHRVINANRSAW 327

Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD--RTCIAASARLHTIQWNR 407
            +  Y   +           L+ P ++ ++     +    D       +           
Sbjct: 328 EIYGYTEEEYCRQ-------LNDPFVTVSDGDSEWIHRTVDELGRHGGSVFYEREALKKD 380

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVD----TRINKRKMEIEVMQLCSILEATSD 463
             S  ++ +     N     +    +  +  +     +  +++  IE   L + +     
Sbjct: 381 GASCWVSVMMERLINHDGIEV-IQVVFSDISEIKRLQKEQEQERLIENRSLRTAIYTAYQ 439

Query: 464 GIAIIN-REGIILSTNRA--------VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
            I   N  +    + N                   +       +   +       +    
Sbjct: 440 LIVRANLTQDTYEALNERDYIDEIDPYGHYSDQLRKTAEGLHPSYRDDFIHTFSADSLER 499

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL-----TMHD-ISEWKQEK 568
              S +    +E   +G  +    LS+  I  + P+S           + D  +E   ++
Sbjct: 500 RFASGEQEVYMECQRMGRDRVYHWLSVTCIQVENPYSDEVLCILLLKVLDDQRTEKMLQE 559

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
             L +A   A+  +  KSDF +R+SH+IRTP+ AIIG S +    +       R  E  +
Sbjct: 560 QVLRNALASAKAANQAKSDFFSRMSHDIRTPMNAIIGMSAI---GQLKMNEPERVRECFS 616

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            ID S   +L ++ND+LD+SKIESGKM L          +S+  +++   A E R+  R 
Sbjct: 617 KIDVSSRYLLSLINDILDMSKIESGKMILTNARFDFSGLISQINTIIYPQALENRLSCRI 676

Query: 689 SFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIST--THTSNE--EVILRVRD 743
                + R    D   + QI +N+LSNA+ FTP+GG+I +    +  +N    V  R+ D
Sbjct: 677 HHVGVLERFYIGDALRINQILMNLLSNALKFTPAGGKIDLDIGESRRANGFAYVQFRISD 736

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TG+GM+   +++   PF Q          G+GLGL +  +MV    G   + S   +GT+
Sbjct: 737 TGIGMSPEFMKRLYVPFEQETTDIARNKIGSGLGLSIVHSMVQLMGGTIEVQSEKNRGTV 796

Query: 804 IEIIFPL 810
             +  PL
Sbjct: 797 FTVTLPL 803



 Score = 40.0 bits (92), Expect = 1.9,   Method: Composition-based stats.
 Identities = 9/121 (7%), Positives = 31/121 (25%), Gaps = 9/121 (7%)

Query: 98  ISEELPKTIGNYAFKMIGMRLCD---VSDILHI-DPNNHIGDLLKRQNTWYGKTTLWPIE 153
           IS+ L + +G  +       +             +  + +   L   +++ G+  +   +
Sbjct: 185 ISDGLCRMLGYESAAAYRAAVNSCAGFIHPDDFVEMRDRVSASLASGDSYSGEYRIVRPD 244

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
           G      +          + E         +       +     ++ ++  S        
Sbjct: 245 GG--VRWVLDLGKRFTDVDNE---TVVSCFITDITERVEREVALEKANRNISRQAAFLSQ 299

Query: 214 H 214
            
Sbjct: 300 L 300


>gi|307154213|ref|YP_003889597.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7822]
 gi|306984441|gb|ADN16322.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7822]
          Length = 681

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 109/540 (20%), Positives = 195/540 (36%), Gaps = 27/540 (5%)

Query: 285 KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYA 344
           + +      +N    F  L   +     +     E L             +   GN+ Y 
Sbjct: 126 EDEEVSGFLSNLNSPFTTLISSDDTKSYSCETSLERLASFPELIANPIIEIDLLGNITYL 185

Query: 345 NPSFLLLTKYKSVDDIEIAGGLS----------TLLDAPKLSDNNAIKPVMLYRSDRTCI 394
           NP+ +          +                 T             +  + Y      I
Sbjct: 186 NPAAVSQFPNLRQQGLRHPVLAGIVSMVENEQQTHFVREVTVGEQIFEQSIHYIIVGELI 245

Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ---NGIEPEDVDTRINKRKMEIEV 451
                  T +   E  L  ++   E   Q            ++ E  +    +  ++  +
Sbjct: 246 RTYLTDITERKRVEALLKQSYEELEHRVQQRTAELASINISLKDEIAERARAENALKQSM 305

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP--VEDILRKPFTVFLEQNTPSVM 509
               ++L A  D +  I +EG ++  N    K    P   E+ L K     L       M
Sbjct: 306 ATNRALLNAIPDWMFRITKEGTVV--NFKAGKCVEVPLLSEEFLEKNLGEVLPSEIGQSM 363

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN 569
            + + E    +  Q LE        E K   +RI I      +     + DI+E K+ + 
Sbjct: 364 MNCIKEAFLTEELQILEYQLNSHHGE-KDYEVRIAIT---SENEVMAIVRDITERKRVEQ 419

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
            + HA +  ++ +  K+ F+   SHE RTPL  I+  +E +       L   + + +   
Sbjct: 420 DIRHALEKEKQLNELKTRFVTMTSHEFRTPLAIILSSAE-LIEHYAHKLDEKKKMTHLQR 478

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I  +   +  ++ND+L + K E+GK+     P+SL +   + +  VQL  +   I+    
Sbjct: 479 IQTAVKHMTGLLNDVLVLGKAEAGKIEFMPTPISLAQFCRQLVEEVQLTTSTHTIVFCAH 538

Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749
             N  P    D + ++ I  N+L+NAI ++P    +       S  +VI R++D G+G+ 
Sbjct: 539 --NQCPNGCLDQQLLRHILTNLLTNAIKYSPESSLVQFDLICESQ-KVIFRIQDQGIGIP 595

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             E  +    F +   S      GTGLGL + K  VD + G+  + S   +GT   +  P
Sbjct: 596 ANEQPELFNSFFRA--SNVGSISGTGLGLSIVKKAVDLHGGQIEVESRLGEGTTFTVKLP 653


>gi|204929282|ref|ZP_03220425.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|204321826|gb|EDZ07025.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|322617023|gb|EFY13929.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322617671|gb|EFY14570.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322624699|gb|EFY21528.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322630248|gb|EFY27018.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322634429|gb|EFY31162.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322639139|gb|EFY35831.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322640136|gb|EFY36802.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322645776|gb|EFY42300.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322651551|gb|EFY47926.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322656112|gb|EFY52411.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322659464|gb|EFY55711.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322665926|gb|EFY62109.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322669836|gb|EFY65977.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322673821|gb|EFY69918.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322678579|gb|EFY74635.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322683625|gb|EFY79639.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322687701|gb|EFY83671.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|323196202|gb|EFZ81359.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323198370|gb|EFZ83472.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323204192|gb|EFZ89203.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323208578|gb|EFZ93517.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323218249|gb|EGA02959.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323222993|gb|EGA07342.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323227428|gb|EGA11593.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323232244|gb|EGA16347.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323235723|gb|EGA19807.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323241117|gb|EGA25153.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323244859|gb|EGA28861.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323248570|gb|EGA32501.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
 gi|323251590|gb|EGA35458.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323255022|gb|EGA38812.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
 gi|323263083|gb|EGA46629.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323268143|gb|EGA51620.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323270764|gb|EGA54202.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
          Length = 948

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 98/426 (23%), Positives = 172/426 (40%), Gaps = 35/426 (8%)

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
           +     L  I+      L +  I                 E        +  +   E  Q
Sbjct: 303 VPVDLVLERIR-----ILILNAILLNVLVGAGLFTLARMYERRIFIPAESDAQRLEEHEQ 357

Query: 454 L-CSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
               I+ +   GI I+   +G+ + +N            +  ++                
Sbjct: 358 FNRKIVASAPVGICILRTIDGVNILSNELAHTYLNMLTHEDRQR---------------- 401

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571
            LT+I+       ++      T     L +  +  +    +     + D+S   + +  L
Sbjct: 402 -LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSTRVKMEESL 456

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
               + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R       ++
Sbjct: 457 QEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR---LVTAMN 512

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
            S +L+L I++D+LD SKIES ++ +     S  E ++   +        K++ +     
Sbjct: 513 NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFIE 572

Query: 692 NNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
            ++P  +  D   ++Q+  N+LSNAI FT  G  I++       + + +RVRDTGVG+  
Sbjct: 573 PDVPVSLNGDPMRLQQVISNLLSNAIKFTDIG-CIVLHVRC-DGDYLSIRVRDTGVGIPA 630

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+   +  PL
Sbjct: 631 KEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTLRIPL 690

Query: 811 YDTSHP 816
           Y   +P
Sbjct: 691 YGAQYP 696


>gi|157144825|ref|YP_001452144.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Citrobacter koseri ATCC BAA-895]
 gi|157082030|gb|ABV11708.1| hypothetical protein CKO_00552 [Citrobacter koseri ATCC BAA-895]
          Length = 948

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 100/495 (20%), Positives = 188/495 (37%), Gaps = 41/495 (8%)

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
             P+   +             + LT  +S    E                    + ++L 
Sbjct: 239 SLPMGVTILDENGH-----PLISLTGPESNIRPEPRWMQERSWFGYTPG----FRELVLK 289

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV---DTRINK 444
           +S      +      +    E+   +              +       E         + 
Sbjct: 290 KSLPPSSLSIVYSVPVDLVLEHIRMLILNAILLNVLVGAALFTLARMYERRIFIPAESDA 349

Query: 445 RKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
           +++E        I+ +   GI I+   +G+ + +N            +  ++        
Sbjct: 350 QRLEEHEQFNRKIVASAPVGICILRTIDGVNILSNELAHTYLNMLTHEDRQR-------- 401

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                    LT+I+       ++      T     L +  +  +    +     + D+S 
Sbjct: 402 ---------LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSA 448

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + +  L    + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R 
Sbjct: 449 RVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKALPKGVDR- 506

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
                 ++ S +L+L I++D+LD SKIES ++ +     S  E ++   +        K+
Sbjct: 507 --LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQ 564

Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           + +      ++P  +  D   ++Q+  N+LSNAI FT +G  I++       + + ++VR
Sbjct: 565 LGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG-CIVLHVQC-DGDYLSIQVR 622

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTGVG+   E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+
Sbjct: 623 DTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGS 682

Query: 803 LIEIIFPLYDTSHPH 817
              +  PLY   +P 
Sbjct: 683 QFTLRIPLYGAQYPQ 697


>gi|123969074|ref|YP_001009932.1| two-component sensor histidine kinase [Prochlorococcus marinus str.
           AS9601]
 gi|123199184|gb|ABM70825.1| two-component sensor histidine kinase [Prochlorococcus marinus str.
           AS9601]
          Length = 688

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 80/394 (20%), Positives = 175/394 (44%), Gaps = 41/394 (10%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            +++   ++  S++   +DG  +++ +G I+ TN    +LF +    +  K F   + + 
Sbjct: 288 EELKAAQIKQQSLIATMADGAILLDSKGKIVLTNPTAKRLFRWEGRFLEGKHFLNEIPEI 347

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEE-KLLSLRIIIKKLPFSSCYSLTMHDISE 563
             + ++  +  IL+ +  +   + +LG      +++   ++          ++T+ D++ 
Sbjct: 348 LSNDLHSNIESILNREKEKDDLRFSLGEPARTLRIVLQSVLDTNKIELKGIAVTIQDLTR 407

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
                           + ++ ++ F++ VSHE+RTPL  I  + E + + +   L +   
Sbjct: 408 --------------EVELNAAQNRFISNVSHELRTPLFNIKSYVETLHDLK-DQLSDEEQ 452

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
           IE+    +   + +  +VND+LD+S++ESGK+ +  E + +  A+ + +   +L A EK 
Sbjct: 453 IEFLGIANSETDRLTRLVNDVLDLSRLESGKI-VQLEQMDIKPAIEQTLRNYRLNATEKN 511

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-------- 735
           + +       IP IL +   + Q+  N+L N + F+P    +II      +         
Sbjct: 512 VSLAHDIEETIPPILGNFDLLLQVFDNLLGNGLKFSPKNSTLIIRAYTWPDSCPAFPPSI 571

Query: 736 ---------------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
                          +V + + DTG G++  + EK    F ++ NS     +GTGLGL +
Sbjct: 572 KNDAAPQCELVSPLPKVRIEIADTGSGISQADQEKIFDRFYRVENSV-HTEQGTGLGLSI 630

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
            + +++ + G+  + S    GT       L  + 
Sbjct: 631 VRGIIEKHGGEIRMASELGVGTTFWFDLALAQSD 664


>gi|16761198|ref|NP_456815.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|29141108|ref|NP_804450.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|289830050|ref|ZP_06547499.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-3139]
 gi|17433762|sp|Q56128|RCSC_SALTI RecName: Full=Sensor protein rcsC; AltName: Full=Capsular synthesis
           regulator component C
 gi|25298510|pir||AD0790 sensor protein RcsC (EC 2.7.3.-) [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16503497|emb|CAD07502.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|29136734|gb|AAO68299.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
          Length = 948

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 98/426 (23%), Positives = 172/426 (40%), Gaps = 35/426 (8%)

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
           +     L  I+      L +  I                 E        +  +   E  Q
Sbjct: 303 VPVDLVLERIR-----ILILNAILLNVLVGAGLFTLARMYERRIFIPAESDAQRLEEHEQ 357

Query: 454 L-CSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
               I+ +   GI I+   +G+ + +N            +  ++                
Sbjct: 358 FNRKIVASAPVGICILRTIDGVNILSNELAHTYLNMLTHEDRQR---------------- 401

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571
            LT+I+       ++      T     L +  +  +    +     + D+S   + +  L
Sbjct: 402 -LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSTRVKMEESL 456

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
               + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R       ++
Sbjct: 457 QEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR---LVTAMN 512

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
            S +L+L I++D+LD SKIES ++ +     S  E ++   +        K++ +     
Sbjct: 513 NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFIE 572

Query: 692 NNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
            ++P  +  D   ++Q+  N+LSNAI FT  G  I++       + + +RVRDTGVG+  
Sbjct: 573 PDVPVSLNGDPMRLQQVISNLLSNAIKFTDIG-CIVLHVRC-DGDYLSIRVRDTGVGIPA 630

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+   +  PL
Sbjct: 631 KEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTLRIPL 690

Query: 811 YDTSHP 816
           Y   +P
Sbjct: 691 YGAQYP 696


>gi|320166405|gb|EFW43304.1| response regulator receiver [Capsaspora owczarzaki ATCC 30864]
          Length = 1498

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 94/398 (23%), Positives = 168/398 (42%), Gaps = 34/398 (8%)

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG------------YPVEDILRK- 495
            +   L +IL+++ D +A+ N    +L ++    +L G                    + 
Sbjct: 261 QQHQILEAILQSSGDALAVFNATSDVLCSSTKFQQLVGSASHPGALISDSVNAATTDGQE 320

Query: 496 -----PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII-----I 545
                     LE  +   +   +T +           + L   K E+ L L +       
Sbjct: 321 APIFPSPLDLLEPESHRQVQRAITSMFEAGSDYNTADLDLCKVKSEEALPLHVRSTLLPP 380

Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
            K   S        D++   + ++ L  A + ++  +  KS FLA +SHEIR  L+ I+G
Sbjct: 381 LKAGSSGLMLAMFDDLAPKNRLESALLEAHR-SKHANESKSRFLANMSHEIRVWLSGILG 439

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
              +++  +          E+   I  S  ++L ++ND+LD SKIE+G++ +      + 
Sbjct: 440 MIHLLEGTQL----TEEQHEFLGTIKMSAQILLTVINDILDFSKIEAGQLTIERVEFDIF 495

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ 724
             +   + L+   A  K +L++      IP  +L D   ++QI +N+LSNAI FT  G +
Sbjct: 496 NTIEMVVELLYPSAGNKNLLLQCFIDPRIPTKVLGDPSRLQQILVNLLSNAIKFTKKG-R 554

Query: 725 IIISTTHT----SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
           + +  T       N  V+  V DTG+G+T   L +  + F Q   S   +  GTGLGL +
Sbjct: 555 VFLKCTLENETLENATVLFEVHDTGIGLTPDTLARLFRRFSQEDASTTRKFGGTGLGLVI 614

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
           +K++V+   G     S   KG+      P+   +   D
Sbjct: 615 SKSLVELMGGSIGADSVSGKGSRFWFRLPVGVVAEQAD 652


>gi|326624090|gb|EGE30435.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
          Length = 948

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 98/426 (23%), Positives = 172/426 (40%), Gaps = 35/426 (8%)

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
           +     L  I+      L +  I                 E        +  +   E  Q
Sbjct: 303 VPVDLVLERIR-----ILILNAILLNVLVGAGLFTLARMYERRIFIPAESDAQRLEEHEQ 357

Query: 454 L-CSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
               I+ +   GI I+   +G+ + +N            +  ++                
Sbjct: 358 FNRKIVASAPVGICILRTIDGVNILSNELAHTYLNMLTHEDRQR---------------- 401

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571
            LT+I+       ++      T     L +  +  +    +     + D+S   + +  L
Sbjct: 402 -LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSTRVKMEESL 456

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
               + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R       ++
Sbjct: 457 QEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR---LVTAMN 512

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
            S +L+L I++D+LD SKIES ++ +     S  E ++   +        K++ +     
Sbjct: 513 NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFIE 572

Query: 692 NNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
            ++P  +  D   ++Q+  N+LSNAI FT  G  I++       + + +RVRDTGVG+  
Sbjct: 573 PDVPVSLNGDPMRLQQVISNLLSNAIKFTDIG-CIVLHVRC-DGDYLSIRVRDTGVGIPA 630

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+   +  PL
Sbjct: 631 KEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTLRIPL 690

Query: 811 YDTSHP 816
           Y   +P
Sbjct: 691 YGAQYP 696


>gi|182625259|ref|ZP_02953034.1| sensory box histidine kinase [Clostridium perfringens D str.
           JGS1721]
 gi|177909571|gb|EDT72011.1| sensory box histidine kinase [Clostridium perfringens D str.
           JGS1721]
          Length = 791

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 87/383 (22%), Positives = 169/383 (44%), Gaps = 22/383 (5%)

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
           +  +     + ++     L  I     D I  ++  G+I   N +V K   Y  E+I+  
Sbjct: 388 DITEEYTLTKNIKRNEQLLSCINNNVQDLIISVDNNGLITYVNDSVLKTLNYTYEEIIGM 447

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--- 552
           P    L +N        L ++   D   +++   +G       + +  II+ L  ++   
Sbjct: 448 PIINLLGKND-----EILNQLKLEDEEDSIKCKLVGKH---SFVYVESIIRTLNDNNEIP 499

Query: 553 -CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
               +   +++  K+ +N L+   K A+     +++F A +SHE+RTPL  I    +++ 
Sbjct: 500 YGKVIVAKNLTSKKRLEN-LAIKFKEAKAYEQIRNEFFANISHELRTPLNIIYSTIQLLN 558

Query: 612 NQRFGPLGN-----PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
           ++      +      +Y +       +   +L ++N+L+D+SKIE G +   F    +  
Sbjct: 559 SKHETDPMDFNNFYDKYKQGLKI---NCYRMLRLINNLIDVSKIEVGFLKADFTNRDIVF 615

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726
            V   +SLV  ++  K I I          I  D   ++++ LN+LSNAI FT + G+I 
Sbjct: 616 LVENIVSLVIPHSENKDINIIFDTNVEENIIKCDPVKIERLILNLLSNAIKFTQNHGEIF 675

Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
           +    + +  V + ++D G+G+           F Q   S + R EG+G+GL + K++ +
Sbjct: 676 VDLNISKD-WVKISIKDNGIGIPKEMQASIFDRFVQADKSLKRRNEGSGIGLSIVKSIAE 734

Query: 787 ANMGKFYIFSTPAKGTLIEIIFP 809
            + GK  + S   KG+   +  P
Sbjct: 735 LHDGKIELISDGIKGSEFIVWLP 757


>gi|168214052|ref|ZP_02639677.1| sensory box histidine kinase [Clostridium perfringens CPE str.
           F4969]
 gi|170714403|gb|EDT26585.1| sensory box histidine kinase [Clostridium perfringens CPE str.
           F4969]
          Length = 791

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 87/383 (22%), Positives = 169/383 (44%), Gaps = 22/383 (5%)

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
           +  +     + ++     L  I     D I  ++  G+I   N +V K   Y  E+I+  
Sbjct: 388 DITEEYTLTKNIKRNEQLLSCINNNVQDLIISVDNNGLITYVNDSVLKTLNYTYEEIIGM 447

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--- 552
           P    L +N        L ++   D   +++   +G       + +  II+ L  ++   
Sbjct: 448 PIINLLGKND-----EILNQLKLEDEEDSIKCKLVGKH---SFVYVESIIRTLNDNNEIP 499

Query: 553 -CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
               +   +++  K+ +N L+   K A+     +++F A +SHE+RTPL  I    +++ 
Sbjct: 500 YGKVIVAKNLTSKKRLEN-LAIKFKEAKAYEQIRNEFFANISHELRTPLNIIYSTIQLLN 558

Query: 612 NQRFGPLGN-----PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
           ++      +      +Y +       +   +L ++N+L+D+SKIE G +   F    +  
Sbjct: 559 SKHETDPMDFNNFYDKYKQGLKI---NCYRMLRLINNLIDVSKIEVGFLKADFTNRDIVF 615

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726
            V   +SLV  ++  K I I          I  D   ++++ LN+LSNAI FT + G+I 
Sbjct: 616 LVENIVSLVIPHSENKDINIIFDTNVEENIIKCDPVKIERLILNLLSNAIKFTQNHGEIF 675

Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
           +    + +  V + ++D G+G+           F Q   S + R EG+G+GL + K++ +
Sbjct: 676 VDLNISKD-WVKISIKDNGIGIPKEMQASIFDRFVQADKSLKRRNEGSGIGLSIVKSIAE 734

Query: 787 ANMGKFYIFSTPAKGTLIEIIFP 809
            + GK  + S   KG+   +  P
Sbjct: 735 LHDGKIELISDGIKGSEFIVWLP 757


>gi|110799765|ref|YP_694661.1| sensory box histidine kinase [Clostridium perfringens ATCC 13124]
 gi|168210597|ref|ZP_02636222.1| sensory box histidine kinase [Clostridium perfringens B str. ATCC
           3626]
 gi|168217589|ref|ZP_02643214.1| sensory box histidine kinase [Clostridium perfringens NCTC 8239]
 gi|110674412|gb|ABG83399.1| sensory box histidine kinase [Clostridium perfringens ATCC 13124]
 gi|170711346|gb|EDT23528.1| sensory box histidine kinase [Clostridium perfringens B str. ATCC
           3626]
 gi|182380362|gb|EDT77841.1| sensory box histidine kinase [Clostridium perfringens NCTC 8239]
          Length = 791

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 87/383 (22%), Positives = 169/383 (44%), Gaps = 22/383 (5%)

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
           +  +     + ++     L  I     D I  ++  G+I   N +V K   Y  E+I+  
Sbjct: 388 DITEEYTLTKNIKRNEQLLSCINNNVQDLIISVDNNGLITYVNDSVLKTLNYTYEEIIGM 447

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--- 552
           P    L +N        L ++   D   +++   +G       + +  II+ L  ++   
Sbjct: 448 PIINLLGKND-----EILNQLKLEDEEDSIKCKLVGKH---SFVYVESIIRTLNDNNEIP 499

Query: 553 -CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
               +   +++  K+ +N L+   K A+     +++F A +SHE+RTPL  I    +++ 
Sbjct: 500 YGKVIVAKNLTSKKRLEN-LAIKFKEAKAYEQIRNEFFANISHELRTPLNIIYSTIQLLN 558

Query: 612 NQRFGPLGN-----PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
           ++      +      +Y +       +   +L ++N+L+D+SKIE G +   F    +  
Sbjct: 559 SKHETDPMDFNNFYDKYKQGLKI---NCYRMLRLINNLIDVSKIEVGFLKADFTNRDIVF 615

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726
            V   +SLV  ++  K I I          I  D   ++++ LN+LSNAI FT + G+I 
Sbjct: 616 LVENIVSLVIPHSENKDINIIFDTNVEENIIKCDPVKIERLILNLLSNAIKFTQNHGEIF 675

Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
           +    + +  V + ++D G+G+           F Q   S + R EG+G+GL + K++ +
Sbjct: 676 VDLNISKD-WVKISIKDNGIGIPKEMQASIFDRFVQADKSLKRRNEGSGIGLSIVKSIAE 734

Query: 787 ANMGKFYIFSTPAKGTLIEIIFP 809
            + GK  + S   KG+   +  P
Sbjct: 735 LHDGKIELISDGIKGSEFIVWLP 757


>gi|94264862|ref|ZP_01288637.1| PAS [delta proteobacterium MLMS-1]
 gi|93454683|gb|EAT04948.1| PAS [delta proteobacterium MLMS-1]
          Length = 1089

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 122/663 (18%), Positives = 226/663 (34%), Gaps = 46/663 (6%)

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247
            +  +     +   +  +    +K G    E     +        ++             
Sbjct: 74  TLLRETLDALRGQGRFLAASDLVKNGLIDTEDRYRYLPILFRSLQNIAWSETRGRFALLD 133

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ------YFGTLQNNSKESFE 301
               D+   E      +E  +     DF           Q          + +  +   E
Sbjct: 134 FQGVDIFSNELAGFPAAEREAAIGGSDFFAGRQELLLFNQDGIIFLTPVLIHDFIEGWVE 193

Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYAN-----PSFLLLTKYK- 355
                +      +  E  N     +D+  +  F  +       +     P+F      K 
Sbjct: 194 ISLPGSEALQLFHSWEDGNHAMALLDRQGVVVFADTLHRRKRESDTSRPPAFSTTLPVKV 253

Query: 356 ------SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
                  ++ I   G +   ++  +      I   +L       +A       ++   + 
Sbjct: 254 AGLEGYQLEIIISRGRIDAGINELRRRLLFTIAGALLAVIAAIVLATRLTSRPLEQLGQR 313

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME-IEVMQLCSILEATSDGIAII 468
             A+   P  +     E   +       ++  +++ +    +  +L  ++  +   I  +
Sbjct: 314 FKAIAAAPDLQTRLPGEGPLEVHQLTAAINQTLDQLERNYTDKTRLDQLMAGSPGVIYAL 373

Query: 469 NRE-GIILSTNRAVSKLFGYPVEDILRKP--FTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
           + E       +    +L+G    +I+     +   +     +         L+       
Sbjct: 374 DPETLHPHFVSGNTEELYGESNREIMATTDWWRQRVHPGDLAAATAETAAWLAAACPGNN 433

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH----DISEWKQEKNKLSHAKKIAEKE 581
                   ++   L +   IK L  SS     +     DIS  K+++ KL  AK  AE  
Sbjct: 434 IHRYRMVRRDGTQLWVEDRIKALRDSSGRIREIVGNHIDISARKKDEEKLREAKIAAEAA 493

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
           +  KS FLA +SHEIRTP+ AIIG SE+               +    I  S  L+L I+
Sbjct: 494 NLAKSAFLANMSHEIRTPMNAIIGLSELTLQGELAA----EQRDSLEKIHSSSQLLLGII 549

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-AD 700
           ND+LD SKIE+G + L   P      V     L +  A  K + +       IP +L  D
Sbjct: 550 NDILDYSKIEAGHLQLAPHPFRPARLVERLGHLFRQNAAAKGLELVYHLDPEIPPVLLGD 609

Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTH------------TSNEEVILRVRDTGVGM 748
              + QI  N+L+NA+ FT  G ++ +                 +   +   V DTGVG+
Sbjct: 610 ELRLGQIFTNLLANALKFTRKG-RVELRIQRLAAVAEAEADAAAAAVGLRCAVSDTGVGI 668

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL--IEI 806
              + ++  KPF Q  ++   +  GTGLGL ++  +V+   G+  + S P +G+     I
Sbjct: 669 DQEQRKRLFKPFSQADDTTTRKYGGTGLGLVISARLVEQMGGRLQLESEPGRGSTFFFTI 728

Query: 807 IFP 809
             P
Sbjct: 729 TLP 731


>gi|18309189|ref|NP_561123.1| two-component sensor histidine kinase [Clostridium perfringens str.
           13]
 gi|18143864|dbj|BAB79913.1| two-component sensor histidine kinase [Clostridium perfringens str.
           13]
          Length = 791

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 87/383 (22%), Positives = 169/383 (44%), Gaps = 22/383 (5%)

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
           +  +     + ++     L  I     D I  ++  G+I   N +V K   Y  E+I+  
Sbjct: 388 DITEEYTLTKNIKRNEQLLSCINNNVQDLIISVDNNGLITYVNDSVLKTLNYTYEEIIGM 447

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--- 552
           P    L +N        L ++   D   +++   +G       + +  II+ L  ++   
Sbjct: 448 PIINLLGKND-----EILNQLKLEDEEDSIKCKLVGKH---SFVYVESIIRTLNDNNEIP 499

Query: 553 -CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
               +   +++  K+ +N L+   K A+     +++F A +SHE+RTPL  I    +++ 
Sbjct: 500 YGKVIVAKNLTSKKRLEN-LAIKFKEAKAYEQIRNEFFANISHELRTPLNIIYSTIQLLN 558

Query: 612 NQRFGPLGN-----PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
           ++      +      +Y +       +   +L ++N+L+D+SKIE G +   F    +  
Sbjct: 559 SKHETDPMDFNNFYDKYKQGLKI---NCYRMLRLINNLIDVSKIEVGFLKADFTNRDIVF 615

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726
            V   +SLV  ++  K I I          I  D   ++++ LN+LSNAI FT + G+I 
Sbjct: 616 LVENIVSLVIPHSENKDINIIFDTNVEENIIKCDPVKIERLILNLLSNAIKFTQNHGEIF 675

Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
           +    + +  V + ++D G+G+           F Q   S + R EG+G+GL + K++ +
Sbjct: 676 VDLNISKD-WVKISIKDNGIGIPKEMQASIFDRFVQADKSLKRRNEGSGIGLSIVKSIAE 734

Query: 787 ANMGKFYIFSTPAKGTLIEIIFP 809
            + GK  + S   KG+   +  P
Sbjct: 735 LHDGKIELISDGIKGSEFIVWLP 757


>gi|322435323|ref|YP_004217535.1| multi-sensor signal transduction histidine kinase [Acidobacterium
           sp. MP5ACTX9]
 gi|321163050|gb|ADW68755.1| multi-sensor signal transduction histidine kinase [Acidobacterium
           sp. MP5ACTX9]
          Length = 458

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 78/383 (20%), Positives = 156/383 (40%), Gaps = 34/383 (8%)

Query: 438 VDTRINKRKME---IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
             ++  +  +E       QL ++L++  D +  ++  G I  TN  + K+   P      
Sbjct: 92  TASKRVQGSLETAAESRRQLEALLDSMQDAVVAVDAAGRIQWTNERMQKMMLLPGGYFTG 151

Query: 495 --KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
             +     ++      +   +   L           +L      ++  +           
Sbjct: 152 AVRVGHALVQTVRDPDVLECVRVALEDTAVAVRRSTSLVP---GRIYEVNASPMP---GG 205

Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
                +HD++  ++ +                + DF+A VSHE+RTPLT+I G+ E + +
Sbjct: 206 GAVAVLHDVTRIEEVE--------------RTQKDFVANVSHELRTPLTSITGYVETLLD 251

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
              G   +P+  E+   I ++   +  +  DLL ++++E+  + L   PV  D  V EA+
Sbjct: 252 HEAGI--SPQGREFLGTILKNATRMNRLTEDLLVMARVEAATVELSPAPVPADLLVREAV 309

Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS----GGQIIIS 728
           + ++    E   ++      +  ++ AD  +V Q+  N++ NAI +       G +++IS
Sbjct: 310 AGMKGLVQENEGVLEIGTITDC-QVFADHDAVMQVLSNLIENAIKYGQPKAGGGTRVVIS 368

Query: 729 TTHTSNEE--VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
               +     V   VRD G G+ +  L +  + F ++  ++     GTGLGL + + MV 
Sbjct: 369 AREVAAPYDAVEFSVRDFGQGIASEHLNRIFERFYRVDKTRSRESGGTGLGLSIVRHMVQ 428

Query: 787 ANMGKFYIFSTPAKGTLIEIIFP 809
           A  G     S   +G+      P
Sbjct: 429 AQGGTIRAESELGEGSCFLFTLP 451


>gi|224371000|ref|YP_002605164.1| two-component sensory box histidine kinase/response regulator
           [Desulfobacterium autotrophicum HRM2]
 gi|223693717|gb|ACN17000.1| two-component sensory box histidine kinase/response regulator
           [Desulfobacterium autotrophicum HRM2]
          Length = 825

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 79/528 (14%), Positives = 171/528 (32%), Gaps = 39/528 (7%)

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365
                       E    ++     +  + +    N    +     +  +           
Sbjct: 180 QREKNEEALRHSEEDLKKSQRIAHVGSWRLDLASNHVVWSEELYRMYGFDPSSPPPPYTE 239

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
              L      +       +   R     I     L T++ +               +   
Sbjct: 240 HQKLFTPESWNK--LSTALTNTRETG--IPYELELETLREDGSRGWMW-VHGEVIRDATG 294

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR--EGIILSTNRAVSK 483
             +   G+  +    +  +  ++    +  S+ +     +   NR  +G IL  N   +K
Sbjct: 295 TTVGLRGVTQDITGRKQTEEALKTSEKKYHSLFKNAQVALFR-NRLSDGKILEINERYAK 353

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           + GY   +     F        P+    +L  +    +    E   +    +   + +  
Sbjct: 354 MSGYSNIEDCMAEFNAADAWVDPNGRKEFLRILHKNGVISDYETEIIRR--DGTHIWISF 411

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS--DFLARVSHEIRTPLT 601
                P       ++ DI+E K+ +      +    +    +S       V+H+    L+
Sbjct: 412 SATIFPEQGFLEGSIVDITERKRSERNQEKLQLQLNQAQKMESVGRLAGGVAHDFNNMLS 471

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
            I+G +E+I             +     I ++      +   LL  ++    K  +  + 
Sbjct: 472 IILGNAEIIMEDMDPSNP---IVTNLEEIYKAAERSSSLTRQLLAFAR----KQTIAPKI 524

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           ++L+  +++ + ++ +    + I +  + A N+  +  D   + QI  N+  NA     S
Sbjct: 525 LNLNHVLADMLKML-MRLIGEDIDLTWNPAPNLWSVKIDPSQIDQILANLCVNARDSIKS 583

Query: 722 GGQIIISTT--------------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
            G++ I T                     V++ V D G GM    L+K  +PF    +  
Sbjct: 584 VGKVTIETGNISFDEAYCKEHQGFNPGSYVMMAVSDNGSGMDKKILDKLFEPFFTTKS-- 641

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
              G+GTGLGL     +V  N G   ++S P +GT  +I  P++  + 
Sbjct: 642 --IGQGTGLGLATVYGIVKQNHGFINVYSEPGEGTTFKIYLPVHSETA 687



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/245 (9%), Positives = 56/245 (22%), Gaps = 14/245 (5%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL----KRQNT 142
           W +D        SEEL +  G            +   +   +  N +   L    +    
Sbjct: 207 WRLDLASNHVVWSEELYRMYGFDPSSP-PPPYTEHQKLFTPESWNKLSTALTNTRETGIP 265

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
           +  +      +G+  ++ +      I        G RG  +              K  +K
Sbjct: 266 YELELETLREDGSRGWMWV--HGEVIRDATGTTVGLRG--VTQDITGRKQTEEALKTSEK 321

Query: 203 KFSHLH-EIKKGHSSVEKEKYDIFSQQSPP----PHLRMKNKVSSLTEYYAHKDDVLKTE 257
           K+  L    +            I            +  +++ ++      A  D   + E
Sbjct: 322 KYHSLFKNAQVALFRNRLSDGKILEINERYAKMSGYSNIEDCMAEFNAADAWVDPNGRKE 381

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
              +L         + +    +                       +            ++
Sbjct: 382 FLRILHKNGVISDYETEIIRRDGTHIWISFSATIFPEQGFLEGSIVDITERKRSERNQEK 441

Query: 318 GENLT 322
            +   
Sbjct: 442 LQLQL 446



 Score = 45.0 bits (105), Expect = 0.052,   Method: Composition-based stats.
 Identities = 16/134 (11%), Positives = 39/134 (29%), Gaps = 9/134 (6%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG-KTTLW 150
            G + EI+E   K  G    +            +  +       +L +       +T + 
Sbjct: 341 DGKILEINERYAKMSGYSNIEDCMAEFNAADAWVDPNGRKEFLRILHKNGVISDYETEII 400

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
             +GT  ++ I  +A  I+       G      +             ++L  + +   ++
Sbjct: 401 RRDGT--HIWISFSAT-IFPEQGFLEG-----SIVDITERKRSERNQEKLQLQLNQAQKM 452

Query: 211 KKGHSSVEKEKYDI 224
           +          +D 
Sbjct: 453 ESVGRLAGGVAHDF 466


>gi|78063726|ref|YP_373634.1| multi-sensor hybrid histidine kinase [Burkholderia sp. 383]
 gi|77971611|gb|ABB12990.1| multi-sensor hybrid histidine kinase [Burkholderia sp. 383]
          Length = 1003

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 121/661 (18%), Positives = 219/661 (33%), Gaps = 39/661 (5%)

Query: 173 REFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK---KGHSSVEKEKYDIFSQQS 229
           R   G+  F  +     D    +  + L    + +          +S +     +     
Sbjct: 120 RAAGGWEPFLAIAEVTPDRPAESYARYLGATLAQIDRSSHYPPSPASADLIGGYLIGLDG 179

Query: 230 PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYF 289
               +     V+         D  +      L  + E+         T  L++       
Sbjct: 180 AFLGIVGSGNVARAR--SLPPDIDVPALIARLRPTGETKQKSDMLGGTFTLDRRYDPILG 237

Query: 290 GTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI--PFFVYSHGNLFYANPS 347
            T+    + +        HP     F+   +L    + +        V + G + +    
Sbjct: 238 RTI---VRFARRLDDAAGHPFAWLIFNGTSDLDDIMMPRSDDEDVAVVDARGRIVFGRQR 294

Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
              + +           G         +      + V+  R   + +             
Sbjct: 295 DPAMIE-------RAMNGTRASSGGHVVVRRVGTRFVISDRLPESGLTLITTFSWRSVAS 347

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME--IEVMQLCSILEATSDGI 465
             ++ ++                            N+R +          +++     G+
Sbjct: 348 ATAVGVSVTLAAALFAISMLWIAIVTFDLRALRPANRRAIRLIESEAFNRTLIRTAPAGL 407

Query: 466 AIINR-EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
            +++  +G  +  N AV        + +   P    + Q                     
Sbjct: 408 LLLSAADGETMVRNDAVLAY----DDGVSGLPLGKRIWQACRERQRA---GADERRFVMQ 460

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
            E     +  +   L+  ++  K         T+ D++  K  ++KL  A+  A+  +  
Sbjct: 461 QELAVERAGHDTTYLAAHVVRTKFRGVDVLLCTLTDVTARKLTEDKLREARVAADDANKA 520

Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
           KS FLA +SHEIRTPL AIIG  E++      P    R       I  S + +L+I+ND+
Sbjct: 521 KSTFLATMSHEIRTPLNAIIGNLELMGRAELPPTEQRR----LKTIVSSSDALLNIINDV 576

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRS 703
           LD+SK ES +M L   P  L   + +  S+ +  A+ K + +    A  +    + D   
Sbjct: 577 LDLSKAESNQMALEHIPFDLRRVLQDVASIFRPLADAKGLSLECHVAAELADGYVGDPTR 636

Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSN----EEVILRVRDTGVGMTNYELEKAMKP 759
           ++Q+  N++ NAI FT  GG I I             V + VRDTGVG+    L      
Sbjct: 637 LRQLVSNLVGNAIKFTEHGG-ITIDARLARGDARAGCVEIAVRDTGVGIPGEALPTLFDV 695

Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819
           + Q   S   R  GTGLGLPL + +     G+  + S   +G+      PL D   P  C
Sbjct: 696 YMQADASIYRRFGGTGLGLPLCRRIARLMDGELTVESRLGEGSTFVATLPLTDA--PAGC 753

Query: 820 I 820
           +
Sbjct: 754 L 754


>gi|228902139|ref|ZP_04066303.1| hypothetical protein bthur0014_33180 [Bacillus thuringiensis IBL
           4222]
 gi|228857565|gb|EEN02061.1| hypothetical protein bthur0014_33180 [Bacillus thuringiensis IBL
           4222]
          Length = 490

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 97/514 (18%), Positives = 194/514 (37%), Gaps = 39/514 (7%)

Query: 310 SLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
                      +     +  P     +   G + + NPS   +  Y S++ +E     S 
Sbjct: 2   RNHIQDRSLTEMYASLFEHNPDSIISLNLEGVILHINPSAERILGYTSLE-LEQKNITSI 60

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
           L       + +  + V+    +         + +I       L +         Q     
Sbjct: 61  L-------EAHISEQVLQNIKNTEADNQQEYILSIYHKNGFLLDVVTKLVPIFVQNRLTG 113

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
               ++P +   RI +  ++    +L +++ +    +   + EG  L  N      F + 
Sbjct: 114 VYAIMKPLEKSERI-ENMLKESEKRLRTLVNSMPAFVIFKDHEGRWLEANDYALSCFNFH 172

Query: 489 VEDILRKPFTVFLEQNTPSVMN----HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
                 K  +  ++ N            + E+     RQ L        +++  L L I 
Sbjct: 173 HVPYHGKKDSELIQYNEAYREAFLHCEEIDELAWQ-QRQILHGEEFIIHRDDFDLILSIS 231

Query: 545 IKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
              L           +   D++E K+ +  L  ++K+A           A ++HEIR PL
Sbjct: 232 KVPLYHPDGSRKGLIVMGRDVTELKETEKLLRKSEKLAVV-----GQLTAGIAHEIRNPL 286

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
           T++ GF  ++      P  N     Y + +    + +  I +  + +SK +     L  +
Sbjct: 287 TSLKGFLTLLL-----PEINEEQKWYIDVMLSEISQMESITSQFMAMSKPQ----VLSIQ 337

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720
             ++   + E ++ +   A    + I     + +  I  D   +KQ+ +NIL NAI   P
Sbjct: 338 TCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYVYDIQCDGNQLKQVFINILKNAIEAMP 397

Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
           +GG I I T    +  +++R+ D G G+    + +  +PF        ++ +GTGLGL +
Sbjct: 398 NGGNIFIQTKPLEDNFILIRIIDEGCGIPEDRISRLGEPFY------SLKEKGTGLGLMM 451

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
              +++ + GK +I S   KGT+++I  PL  + 
Sbjct: 452 CYKIIEEHHGKLHISSELNKGTIVDIELPLSSSH 485


>gi|310826218|ref|YP_003958575.1| hypothetical protein ELI_0596 [Eubacterium limosum KIST612]
 gi|308737952|gb|ADO35612.1| hypothetical protein ELI_0596 [Eubacterium limosum KIST612]
          Length = 795

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 108/507 (21%), Positives = 198/507 (39%), Gaps = 39/507 (7%)

Query: 334 FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393
            +  H  L +AN  +  L  +   +       L     A    +   +  V++   + + 
Sbjct: 31  LLDEHFTLVWANEFYYELIGWDKDEYEARYNNLCDTYYADDQEELAKLTEVVMDAIEGSK 90

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
              +  +  +       + +  +                +  +  D  + ++        
Sbjct: 91  GGYT-HISHMPKKDGEYVWVRMVATFADEYIDGYQVSYTVMTDINDLVLMQKA------- 142

Query: 454 LCSILEATSDGIAI---INRE--GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
             ++      G      I+++    +L  N   +  FG    D    P  +         
Sbjct: 143 -QTVTYNALPGFVAKFHIDKDFGLTLLEANARYTAFFGDDCWDTGADPLFLQNYAQNQQA 201

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP---FSSCYSLTMHDIS--- 562
           +     +ILS    Q +         + +   L++    +        Y     DI+   
Sbjct: 202 IEASREKILSG---QPISLGLTVKGVDGREARLQVNASCVDWQNQEPIYLAIFIDITDVT 258

Query: 563 EWKQEKN-------KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
           E ++ +        +L  A   AE+ S  KSDFL+ +SH+IRTP+ AI+G +E+ +    
Sbjct: 259 ELREMQQKLEAQAAELKEALTAAEQASRAKSDFLSSMSHDIRTPMNAIVGMTEIARIHLD 318

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
            P    R     + I  S   +L ++ND+LD+S IESG M L     SL + +   ++++
Sbjct: 319 DPG---RVENCLDKIALSSQHLLGLINDVLDMSAIESGSMALSNSAFSLPDFMENIVAII 375

Query: 676 QLYANEKRILI-RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST----- 729
           Q  A EKR  +   +F      + AD   +KQI +NILSNA+ FTP  G I ++      
Sbjct: 376 QPAAAEKRQHLFIRTFGVEHEHLYADPLRLKQIFINILSNAVKFTPEEGSITLTLEEFPA 435

Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
                 +      DTG+GMT+  +      F +  +S+  + EG+GLG+ + K +VD   
Sbjct: 436 AREGCGQFRFTFADTGMGMTDAFMTHIFDSFTRERDSRVDKTEGSGLGMAITKRIVDMMG 495

Query: 790 GKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           G+  + S   KG+   +   L+   +P
Sbjct: 496 GRITVRSAEGKGSTFVVYLSLHIEENP 522


>gi|146312440|ref|YP_001177514.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Enterobacter sp. 638]
 gi|145319316|gb|ABP61463.1| integral membrane sensor hybrid histidine kinase [Enterobacter sp.
           638]
          Length = 949

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 102/494 (20%), Positives = 191/494 (38%), Gaps = 41/494 (8%)

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
             P+   +             + LT  +S   ++                 +    ++L 
Sbjct: 239 SLPMGVTILDENGHT-----LISLTGPESRLKVDPRWMQERSWFGY----TSGFHELVLK 289

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED---VDTRINK 444
           +S      +      +    E    +              +       E    +    + 
Sbjct: 290 KSLPPSSLSIVYSVPVDMVLERIRMLILNSILLNVLVGIALFMLARMYERKIFIPAESDA 349

Query: 445 RKMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
           +++E        I+ +   GI I+  ++G  + +N            +  ++        
Sbjct: 350 QRLEEHEQFNRKIVASAPVGICILRTQDGTNILSNELAHNYLNMLTHEDRQR-------- 401

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                    LT+I+       ++      T     L +  +  +    +     + D+S 
Sbjct: 402 ---------LTQIICGQQVNFVD----VLTSNHTNLQISFVHSRYRNENVAICVLVDVSS 448

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + +  L    + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R 
Sbjct: 449 RVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVER- 506

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
                 ++ S +L+L I++D+LD SKIES ++ +     S  E ++   +        K+
Sbjct: 507 --LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPSEFSPREVMNHISANYMPLVVRKQ 564

Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           + +      ++P  +L D   ++Q+  N+LSNAI FT  G  II+  +  + + + +R+R
Sbjct: 565 LGLYCFIEPDVPLTLLGDPMRLQQVISNLLSNAIKFTDVG-CIILHVS-RAGDYLSIRIR 622

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTGVG+   E+ K   PF Q+    Q   +GTGLGL + + ++    G   + + P  G+
Sbjct: 623 DTGVGIPAKEVVKLFDPFFQVGTGVQRNFQGTGLGLAICEQLISMMDGDISVDTEPGMGS 682

Query: 803 LIEIIFPLYDTSHP 816
              I  PLY   +P
Sbjct: 683 QFTIRIPLYSAQYP 696


>gi|229092613|ref|ZP_04223764.1| hypothetical protein bcere0021_33750 [Bacillus cereus Rock3-42]
 gi|228690766|gb|EEL44542.1| hypothetical protein bcere0021_33750 [Bacillus cereus Rock3-42]
          Length = 516

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 97/529 (18%), Positives = 200/529 (37%), Gaps = 39/529 (7%)

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTK 353
           +S +   + +                +     +  P     +   G + + NPS   +  
Sbjct: 13  SSTQKKRHPNISRRLRNHIQDRSLTEMYASLFEHNPDSIISLNLEGVILHINPSAERILG 72

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
           Y S++ +E     S L       + +  + V+    +         + +I       L +
Sbjct: 73  YTSLE-LEQKNITSIL-------EAHISEQVLQNIKNTEVDNQQEYILSICHKNGFLLDV 124

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
                    Q         ++P +   RI +  ++    +L +++ +    +   + EG 
Sbjct: 125 VTKLVPIFVQNRLTGVYTIMKPLEKSERI-ENMLKESEKRLRTLVNSMPAFVIFKDHEGR 183

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN----HYLTEILSLDLRQTLEKIT 529
            L  N      F +       K  +  ++ N            + E+     RQ L    
Sbjct: 184 WLEANDYALSCFNFHHVPYRGKKDSELIQYNEAYREAFLHCEEVDELAWQ-QRQILHGEE 242

Query: 530 LGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
               +++  L L +    L           +   D++E K+ +  L  ++K+A       
Sbjct: 243 FIIHRDDFDLILSMSKVPLYHPDGSRKGLIVMGRDVTELKETEKLLRKSEKLAVV----- 297

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
               A ++HEIR PLT++ GF  ++      P  N  +  Y + +    + +  I +  +
Sbjct: 298 GQLTAGIAHEIRNPLTSLKGFLTLLL-----PEINEEHKWYIDVMLSEISQMESITSQFM 352

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
            +SK +     L  +  ++   + E ++ +   A    + I     + +  I  D   +K
Sbjct: 353 AMSKPQ----VLAIQTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYVYDIQCDGNQLK 408

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           Q+ +NIL NAI   P+GG I I T    +  +++R+ D G G+    + +  +PF     
Sbjct: 409 QVFINILKNAIEAMPNGGNIFIQTKPLEDNFILIRIIDEGCGIPEDRISRLGEPFY---- 464

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
              ++ +GTGLGL +   +++ + GK +I S   KGT+++I  PL  + 
Sbjct: 465 --SLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTIVDIQLPLSSSH 511


>gi|226356120|ref|YP_002785860.1| histidine kinase [Deinococcus deserti VCD115]
 gi|226318110|gb|ACO46106.1| putative histidine kinase, classic [Deinococcus deserti VCD115]
          Length = 809

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 106/764 (13%), Positives = 216/764 (28%), Gaps = 58/764 (7%)

Query: 86  TWNIDAH-GYLKEISEELPKTIGNYAFKMIGMR--LCDVSDILHIDPNNHIGDLLKRQNT 142
            W  D   G    +S  +   +G    +         D       D      D L     
Sbjct: 59  VWEADPETGRNTFVSAMVESLLGYTQSEWTTAPGFWEDRIHPDDRDRVLAETDRLIGIGA 118

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
            Y             YV I     P +          G  +              +    
Sbjct: 119 PYELDYRLQAS-DGRYVWIRDRITPRFDERGRMVKLGGVMM--DITAQKKTEDQLRSAHD 175

Query: 203 KFSHLHEIKK-----------GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD 251
           + + +                          +I              +V          +
Sbjct: 176 RLAKVFSASPVGIGLTGLQSGRVMDTNDALLEIIGCSREAFVGSGLEQVDPWVNPRDRDE 235

Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
            V   ++   +   ES L         ++           L +                 
Sbjct: 236 IVQGLKEGGSVRDFESQLHHFPTGELRDVLL---SAELLNLDSEDVLLIITQDMTERKKT 292

Query: 312 SAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
            A     E      V         V   G + Y +PS + +  Y + + +         L
Sbjct: 293 EAALSASEARFKALVQHSSDMVSVVNRGGYMTYTSPSLIHILGYPADEMLRRQVM--DFL 350

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
              +  +        ++    T    ++R      +                  P     
Sbjct: 351 HPDEFGEIQEAFAQTVFGGPGTTRTLTSRFQ--HRDGTYRWLEWV--ATNRLDDPHVRGI 406

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI--ILSTNRAVSKLFGYP 488
                +  + + ++  +E        + E + D I +I+ EGI  I+  N   + + GY 
Sbjct: 407 VMNSRDVSERKASEEALEESRRTFEVLFEHSPDAIMLIDFEGIMPIVHCNEVAAVMNGYT 466

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSL--DLRQTLEKITLGSTKEEKLLSLRIIIK 546
            ++++ +   + +      + +             +  L   +    K+  L  + I + 
Sbjct: 467 RDELIGQSVYITVPHGDTLMADPAADHQFRESVRAQGRLRMESTHRRKDGSLFPIEIHLA 526

Query: 547 KLPFSSC--YSLTMHDISEWKQEKNKLSHAKKIA--EKESSHKSDFLARVSHEIRTPLTA 602
            +             DISE K  +  L  ++      ++ +      A ++HE+ TPL A
Sbjct: 527 LVNIGGRELMLSIERDISERKAAEEALRASQSRLLSSEKLASLGRLTAGLAHEVNTPLAA 586

Query: 603 IIGF---SEVIKNQRFGPLG-----NPRYIEYANY----IDRSGNLVLDIVNDLLDISKI 650
            + +   +  +  +    +G        + E A      I+        I   +  + + 
Sbjct: 587 TMNYLHEAARLAREYRDSVGVSEVTEDDHREIATELCGAIEEGAKTAARIGEFIRSM-RG 645

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710
            +       +     +  SE + +V   A    I +      +   +  +     Q+  N
Sbjct: 646 HTRDTVSGVQDFDAVKMASETLIMVAHEARSAGIDLLLEQPKSPVELRGEPGRFTQVLTN 705

Query: 711 ILSNAIHF-TPSG---GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
           ++ N++H  + SG   GQ+ +S   T N   ++RV DTG G+    L +   P     + 
Sbjct: 706 LVVNSVHACSDSGRPKGQVTVSFD-TDNGRTVMRVSDTGTGIPAEILPRIFDPMFTTKD- 763

Query: 767 QQIRGEGTGLGLPLAKAMVDAN-MGKFYIFSTPAKGTLIEIIFP 809
               G+GTGLGL +   +V  +  G   + +    GT   + FP
Sbjct: 764 ---VGKGTGLGLSIIHDIVTGHFHGDIAVETEVGVGTTFVVTFP 804



 Score =  123 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 47/429 (10%), Positives = 120/429 (27%), Gaps = 24/429 (5%)

Query: 164 AALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYD 223
           +AL         S  R    +   R  +  R     L +    L ++  G       +  
Sbjct: 8   SALAHEGSKTTTSTVRAMSFLPTGRPADQARNAPTSLSQDLLELLDLINGIVWEADPETG 67

Query: 224 IFSQQSPPPHLRMKNK------VSSLTEYYAHKDDV-LKTEKYPLLTSEESSLPEQEDFH 276
             +  S      +              E   H DD      +   L    +         
Sbjct: 68  RNTFVSAMVESLLGYTQSEWTTAPGFWEDRIHPDDRDRVLAETDRLIGIGAPYELDYRLQ 127

Query: 277 TINLNQYTKKQYFGTLQNNSKES----FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP 332
             +      +       +            +                +   +     P+ 
Sbjct: 128 ASDGRYVWIRDRITPRFDERGRMVKLGGVMMDITAQKKTEDQLRSAHDRLAKVFSASPVG 187

Query: 333 FFVY--SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390
             +     G +   N + L +        +    GL      P ++  +  + V   +  
Sbjct: 188 IGLTGLQSGRVMDTNDALLEIIGCSREAFVG--SGLEQ--VDPWVNPRDRDEIVQGLKEG 243

Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450
            +     ++LH   +       +            + +    I  +  + +  +  +   
Sbjct: 244 GSVRDFESQLH--HFPTGELRDVLLSAELLNLDSEDVL--LIITQDMTERKKTEAALSAS 299

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
             +  ++++ +SD ++++NR G +  T+ ++  + GYP +++LR+    FL  +    + 
Sbjct: 300 EARFKALVQHSSDMVSVVNRGGYMTYTSPSLIHILGYPADEMLRRQVMDFLHPDEFGEIQ 359

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK---KLPFSSCYSLTMHDISEWKQE 567
               + +      T    +    ++     L  +       P      +   D+SE K  
Sbjct: 360 EAFAQTVFGGPGTTRTLTSRFQHRDGTYRWLEWVATNRLDDPHVRGIVMNSRDVSERKAS 419

Query: 568 KNKLSHAKK 576
           +  L  +++
Sbjct: 420 EEALEESRR 428


>gi|218532511|ref|YP_002423327.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium
           chloromethanicum CM4]
 gi|218524814|gb|ACK85399.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium
           chloromethanicum CM4]
          Length = 1092

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 102/777 (13%), Positives = 213/777 (27%), Gaps = 73/777 (9%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYG--- 145
                    +    + I +    ++G  + +    +        + ++     T      
Sbjct: 191 GPDHVFAFANAAYRQLIAHR--DVLGRPVREALPEIEGQGFFELLDEVFSTGRTHTAHGA 248

Query: 146 -KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
             T L    G      +D    P+       +G   F             A     + +F
Sbjct: 249 PVTILRVPGGVPERRFLDFVYQPMRDAAGTITGV--FVDGSDVTERITGNAALAESEARF 306

Query: 205 SHLHEIKKGHSSVEKEKY--DIFSQQSPPPHLRMKNKVSSLTEYYA-HKDDVLKTEKYPL 261
             + +       V          +++      + + +   L    A H DD   + +  L
Sbjct: 307 RTMADDAPVMMWVTGPDGACQYLNRRWYDFTGQNEAQALGLGWLEAVHPDDRGWSGETFL 366

Query: 262 LT-SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE----SFEYLSHRNHPSLSAYFD 316
              +       +      +                           +      +      
Sbjct: 367 RANARHEGFSLEYRLRRRDGVYRWAIDTASPRFAADGSFLGYIGSVVDIEERRAAELALA 426

Query: 317 EGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
           E E      V+   I  + +       +  P    +       D+ +      L      
Sbjct: 427 ESEERLRLAVESGEIGLWDFDPRAGTLFWPPRIKAMFGLAPDADVTLDDFADGLHPD--- 483

Query: 376 SDNNAIKPVMLYRSDRTCIAA-SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
            D   +        D    A        I         +        +     +   G  
Sbjct: 484 -DRARVTAAFAAALDPVARAFYDEEFRAIGRADGTVRWVAAKGRGVFDAEGRCLRGVGSA 542

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
            +    +  + ++     +L ++L+  +  I +++        NRA  +L GY +++   
Sbjct: 543 IDITARKATEERLVEATRRLDAVLDNATQAIFMMDERQHCAYMNRAAERLTGYSLDETHG 602

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI---TLGSTKEEKLLSLRIIIKKLPFS 551
           K     +    P    + L E           +     +   ++     +      +   
Sbjct: 603 KALHDVVHHTRPDGSPYPLHECPIDQAFPENNQEQGQEIFVHRDGSFYPVAFTASPIRDE 662

Query: 552 S----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS--------------------D 587
                   +   +I    + K +L       E++ + ++                     
Sbjct: 663 GGTPIGTVIEARNIEGELRAKAQLEAFNASLEQQVAARTAELMRTEEALRQSQKMEAVGQ 722

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
               ++H+    LT I G  E +   R           Y N    +      + + LL  
Sbjct: 723 LTGGLAHDFNNLLTGITGSLE-LLQTRLAQGRITEIDRYVNAAQGAAKRAAALTHRLLAF 781

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707
           S+    +  L  +P  ++  V     L++       I +    A  +  +L D   ++  
Sbjct: 782 SR----RQTLDPKPTDVNRLVMGMEDLLRRTI-GPSITLEVVAAGGLWSVLVDPSQLENA 836

Query: 708 ALNILSNAIHFTPSGGQIIISTT-------------HTSNEEVILRVRDTGVGMTNYELE 754
            LN+  NA    P GG+I I T                  + + L V D+G GM+   + 
Sbjct: 837 LLNLCINARDAMPDGGRITIETANKWLDDRGAKERDLDPGQYLSLCVTDSGTGMSPDVIA 896

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
           KA  PF          G+GTGLGL +    V  + G+  I+S   +GT + +  P +
Sbjct: 897 KAFDPFFTTKP----IGQGTGLGLSMIYGFVRQSGGQVRIYSEVGQGTTMCLYLPRH 949



 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 48/532 (9%), Positives = 130/532 (24%), Gaps = 33/532 (6%)

Query: 82  TVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN 141
            +   W      ++   ++      G    + +G    +V   +       +      + 
Sbjct: 57  PMLIVW---GEAHVTLYNDGYAPMCGARHPRALGQSFDEVWHDIWDQVGPILSRAYAGEA 113

Query: 142 TW-YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
           T            G            P+   +   +G   F                   
Sbjct: 114 THMDDIALTMHRNGYPEETHFAFGYTPVRIEDGTVAGM--FCACSETTASVRAGRQMHAE 171

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
            ++F+ L E      +V      +F+  +      + ++            ++     + 
Sbjct: 172 RERFARLFEQSPSFVAVLDGPDHVFAFANAAYRQLIAHRDVLGRPVREALPEIEGQGFFE 231

Query: 261 LLTS------EESSLPEQEDFHTINL---NQYTKKQYFGTLQNNSKESFEYL----SHRN 307
           LL          ++         +      +      +  +++ +               
Sbjct: 232 LLDEVFSTGRTHTAHGAPVTILRVPGGVPERRFLDFVYQPMRDAAGTITGVFVDGSDVTE 291

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
             + +A   E E       D  P+  +V    G   Y N  +   T       +   G L
Sbjct: 292 RITGNAALAESEARFRTMADDAPVMMWVTGPDGACQYLNRRWYDFTGQNEAQAL-GLGWL 350

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
             +    +                    +   RL   +               +      
Sbjct: 351 EAVHPDDRGWSGETFLRANARH---EGFSLEYRL---RRRDGVYRWAIDTASPRFAADGS 404

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
            +   G   +  + R  +  +     +L   +E+   G+   +     L     +  +FG
Sbjct: 405 FLGYIGSVVDIEERRAAELALAESEERLRLAVESGEIGLWDFDPRAGTLFWPPRIKAMFG 464

Query: 487 YPVE-DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS-TKEEKLLSLRII 544
              + D+    F   L  +  + +       L    R   ++        +  +  +   
Sbjct: 465 LAPDADVTLDDFADGLHPDDRARVTAAFAAALDPVARAFYDEEFRAIGRADGTVRWVAAK 524

Query: 545 IKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
            + +  +         +  DI+  K  + +L  A +  +    + +  +  +
Sbjct: 525 GRGVFDAEGRCLRGVGSAIDITARKATEERLVEATRRLDAVLDNATQAIFMM 576


>gi|53722385|ref|YP_111370.1| two-component sensor kinase protein [Burkholderia pseudomallei
           K96243]
 gi|52212799|emb|CAH38831.1| putative two-component sensor kinase protein [Burkholderia
           pseudomallei K96243]
          Length = 737

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 95/615 (15%), Positives = 207/615 (33%), Gaps = 27/615 (4%)

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
           +   L  ++      + E       +        +  VSS           +   +    
Sbjct: 125 QQQRLATLRMLLEKKQHELAATIELRKTEGFDAAQAIVSSDAGKIFMDRARVMVNEMEAT 184

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD---EGE 319
             ++     ++                G L      SF Y+  R     +A      E  
Sbjct: 185 V-QQQLRTLRDRARATRDIAIGVGLASGLLTLAVCVSFGYVMRRLLLVEAAAAHDLFEQR 243

Query: 320 NLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
            L   T+             G + + N     +T   +   +        L      +  
Sbjct: 244 ELLHVTLASIGDGVIATDVGGRITFFNRVAEEMTALCADAVVGQPIE-RVLTFRHAATQR 302

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
               P  +    R   +  A    +  +    L +        +   + +    +  +  
Sbjct: 303 VIDNPARVAVERRRTASLPAHTRFVGRSGGE-LPVDGNAAPTFDANGKLVGAVLVVRDVS 361

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
           +    + +  +        +EA    + ++ R+G I+  N    KLFGY   D++     
Sbjct: 362 ERERAEERFRLA-------VEAAPTAMIMVGRDGRIVLVNSQAEKLFGYARGDMIGHGID 414

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556
           + + +   +    +          + +   +   G  ++     + I +  +  S    +
Sbjct: 415 MLVPERFRAGHWAHRDAFFGNPDARPMGEGRDLFGLRRDGSEFPVEIGLNPITTSEGAFV 474

Query: 557 T--MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
              + DI+  K+ + +L    +   + +     F    SH+++ PL A+ G  ++++ + 
Sbjct: 475 LCSIADITARKRAELELRRRSEELARSNQDLEQFAYVASHDLQEPLRAVAGPLQLLQRRY 534

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
            G L + R  E+  +       +  +++DLL  S++  G++     PV  +  + EA+  
Sbjct: 535 QGQL-DARADEFIGHAVDGATRMQSLIDDLLSYSRV--GRLEDARRPVDCEHVLDEALRN 591

Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST-THTS 733
           +     E    +       +P +      +  +  N++ NAI F        I    HT 
Sbjct: 592 LSAAIRESGAQVTHD---PLPTVHGIEAQLVLLFQNLIGNAIKFRGKDRVARIHLEAHTR 648

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
           ++  +LRVRD G+G+     E+    F ++    +    GTGLGL L K +V+ + G+ +
Sbjct: 649 DDAWLLRVRDNGIGIDPQYFERIFLIFQRLH--TRREYPGTGLGLALCKRIVEHHGGRIF 706

Query: 794 IFSTPAKGTLIEIIF 808
           + S P +GT      
Sbjct: 707 VESEPGQGTTFSFTL 721



 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/353 (9%), Positives = 76/353 (21%), Gaps = 19/353 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL----KRQNTWY 144
           +   G +  ++ +  K  G     MIG  +  +        +    D        +    
Sbjct: 384 VGRDGRIVLVNSQAEKLFGYARGDMIGHGIDMLVPERFRAGHWAHRDAFFGNPDARPMGE 443

Query: 145 GKTTL-WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
           G+       +G+    P+++   PI +    F        +             +R  ++
Sbjct: 444 GRDLFGLRRDGS--EFPVEIGLNPITTSEGAFV----LCSIADITARKRAELELRRRSEE 497

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
            +  ++  +  + V         +    P   ++ +     +  A +      +    + 
Sbjct: 498 LARSNQDLEQFAYVASHDLQEPLRAVAGPLQLLQRRYQGQLDARADEFIGHAVDGATRMQ 557

Query: 264 SEESSLPEQEDFHTINLNQYTK---KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
           S    L        +   +            L+N S    E  +   H  L         
Sbjct: 558 SLIDDLLSYSRVGRLEDARRPVDCEHVLDEALRNLSAAIRESGAQVTHDPLPTVHGIEAQ 617

Query: 321 LTPETVDKCPIPFFVYSHGN-----LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
           L     +                  L         L + +             +    + 
Sbjct: 618 LVLLFQNLIGNAIKFRGKDRVARIHLEAHTRDDAWLLRVRDNGIGIDPQYFERIFLIFQR 677

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
                  P                   I    E     TF          E  
Sbjct: 678 LHTRREYPGTGLGLALCKRIVEHHGGRIFVESEPGQGTTFSFTLSRPGADETR 730



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/308 (9%), Positives = 68/308 (22%), Gaps = 25/308 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI----GDLLKRQNTWY 144
            D  G +   +    +     A  ++G  +  V    H      I       ++R+ T  
Sbjct: 260 TDVGGRITFFNRVAEEMTALCADAVVGQPIERVLTFRHAATQRVIDNPARVAVERRRTAS 319

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNR---VDNDPRALGKRLD 201
                  +  +   +P+D  A P +  N +  G     +V          +   L     
Sbjct: 320 LPAHTRFVGRSGGELPVDGNAAPTFDANGKLVGA--VLVVRDVSERERAEERFRLAVEAA 377

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
                +         V  +   +F            + +        H          P 
Sbjct: 378 PTAMIMVGRDGRIVLVNSQAEKLFGYARGDMIGHGIDMLVPERFRAGHWAHRDAFFGNPD 437

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
                            + +++  +     +  +       L      +     +     
Sbjct: 438 ARPMGEGR--DLFGLRRDGSEFPVEIGLNPITTSEGAF--VLCSIADITARKRAELELRR 493

Query: 322 TPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
             E + +                   F  +  +   + +    G   LL        +A 
Sbjct: 494 RSEELARSNQDL------------EQFAYVASHDLQEPLRAVAGPLQLLQRRYQGQLDAR 541

Query: 382 KPVMLYRS 389
               +  +
Sbjct: 542 ADEFIGHA 549


>gi|52141898|ref|YP_084929.1| sporulation kinase A [Bacillus cereus E33L]
 gi|196038501|ref|ZP_03105810.1| sporulation kinase A [Bacillus cereus NVH0597-99]
 gi|51975367|gb|AAU16917.1| possible sporulation kinase A [Bacillus cereus E33L]
 gi|196030909|gb|EDX69507.1| sporulation kinase A [Bacillus cereus NVH0597-99]
          Length = 510

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 97/529 (18%), Positives = 200/529 (37%), Gaps = 39/529 (7%)

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTK 353
           +S +   + +                +     +  P     +   G + + NPS   +  
Sbjct: 7   SSTQKKRHPNISRRLRNHIQDRSLTEMYASLFEHNPDSIISLNLEGVILHINPSAERILG 66

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
           Y S++ +E     S L       + +  + V+    +         + +I       L +
Sbjct: 67  YTSLE-LEQKNITSIL-------EAHISEQVLQNIKNTEVDNQQEYILSICHKNGFLLDV 118

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
                    Q         ++P +   RI +  ++    +L +++ +    +   + EG 
Sbjct: 119 VTKLVPIFVQNRLTGVYTIMKPLEKSERI-ENMLKESEKRLRTLVNSMPAFVIFKDHEGR 177

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN----HYLTEILSLDLRQTLEKIT 529
            L  N      F +       K  +  ++ N            + E+     RQ L    
Sbjct: 178 WLEANDYALSCFNFHHVPYRGKKDSELIQYNEAYREAFLHCEEVDELAWQ-QRQILHGEE 236

Query: 530 LGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
               +++  L L +    L           +   D++E K+ +  L  ++K+A       
Sbjct: 237 FIIHRDDFDLILSMSKVPLYHPDGSRKGLIVMGRDVTELKETEKLLRKSEKLAVV----- 291

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
               A ++HEIR PLT++ GF  ++      P  N  +  Y + +    + +  I +  +
Sbjct: 292 GQLTAGIAHEIRNPLTSLKGFLTLLL-----PEINEEHKWYIDVMLSEISQMESITSQFM 346

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
            +SK +     L  +  ++   + E ++ +   A    + I     + +  I  D   +K
Sbjct: 347 AMSKPQ----VLAIQTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYVYDIQCDGNQLK 402

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           Q+ +NIL NAI   P+GG I I T    +  +++R+ D G G+    + +  +PF     
Sbjct: 403 QVFINILKNAIEAMPNGGNIFIQTKPLEDNFILIRIIDEGCGIPEDRISRLGEPFY---- 458

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
              ++ +GTGLGL +   +++ + GK +I S   KGT+++I  PL  + 
Sbjct: 459 --SLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTIVDIQLPLSSSH 505


>gi|296103859|ref|YP_003614005.1| two-component system, NarL family, capsular synthesis sensor
           histidine kinase RcsC [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295058318|gb|ADF63056.1| two-component system, NarL family, capsular synthesis sensor
           histidine kinase RcsC [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 948

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 96/425 (22%), Positives = 174/425 (40%), Gaps = 33/425 (7%)

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
           +     L  I+    N++ +  +             +    P + D     +++E     
Sbjct: 303 LPVDMVLERIRILIMNAILLNVLAGGALFTLARMYERKIFIPAESD----AQRLEEHEQF 358

Query: 454 LCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
              I+ +   GI I+  ++G  + +N            +  ++     +           
Sbjct: 359 NRKIVASAPVGICILRTQDGTNILSNELAHNYLNMLTHEDRQR--LTQIICGQQVNFVDV 416

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572
           LT   +                    L +  +  +    +     + D+S   + +  L 
Sbjct: 417 LTSTHTN-------------------LQISFVHSRYRNENVAICVLVDVSARVKMEESLQ 457

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
              + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R       ++ 
Sbjct: 458 EMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR---LVTAMNN 513

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
           S +L+L I++D+LD SKIES ++ +     S  E ++   +        K++ +      
Sbjct: 514 SSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHISANYLPLVVRKQLGLYCFIEP 573

Query: 693 NIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751
           ++P  +  D   ++Q+  N+LSNAI FT  G  I++     + + + +RVRDTGVG+   
Sbjct: 574 DVPLTLHGDPMRLQQVISNLLSNAIKFTDIG-CIVLHV-CRAGDYLSIRVRDTGVGIPAK 631

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
           E+ +   PF Q+    Q   +GTGLGL + + +V    G   + + P  G+   I  PLY
Sbjct: 632 EVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLVSMMDGDISVDTEPGMGSQFTIRIPLY 691

Query: 812 DTSHP 816
              +P
Sbjct: 692 SAQYP 696


>gi|237713394|ref|ZP_04543875.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262406767|ref|ZP_06083316.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294646034|ref|ZP_06723699.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|294810538|ref|ZP_06769191.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
 gi|229446633|gb|EEO52424.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262355470|gb|EEZ04561.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292638605|gb|EFF56958.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|294442302|gb|EFG11116.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
          Length = 512

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 87/381 (22%), Positives = 160/381 (41%), Gaps = 16/381 (4%)

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFG-YPVE 490
           I          +  ++     +  +L+  +  I + + +   ++  N+   +  G  P  
Sbjct: 139 IVSTATKRWQVETSLQQSQRTMQKVLDNINANIFVSDYDTLKVIFANKPFREEAGEVPEN 198

Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL-RIIIKKLP 549
               +     LE          L  + +      +      +   ++  ++  + IK L 
Sbjct: 199 AECWRMLNAGLENGCKHCPKPKL--LDANRKFTGVHFWEDYNPVTKRWYTIQSMAIKWLD 256

Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                     DI+  KQ + +L  AK+ AE+    KS FLA +SHEIRTPL AI+GFS +
Sbjct: 257 GRWAIMELATDITTRKQVELELIQAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSL 316

Query: 610 IKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
           +                Y + +  +  L+L++++D+LDISKIE+G ++L    V + +  
Sbjct: 317 LAET-----DEAELRHVYMSLVQENNELLLNLISDILDISKIEAGMIDLVMGRVDVPQLC 371

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
            E I+       +  + +R    +    I AD   + Q+  N L+NA+ FT  G  I +S
Sbjct: 372 REVIATFSHKKRDSAVELRFDENSPQIVIDADKNRIVQVLSNFLTNALKFTTKGS-ITLS 430

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                  +V   V DTG G+ + +  +    F ++ +      +G GLGL + +++V   
Sbjct: 431 YLLEDESQVRFCVTDTGKGIPDEQKHEIFNRFVKLDSF----VQGAGLGLSICQSLVKRM 486

Query: 789 MGKFYIFSTPAKGTLIEIIFP 809
            GK  + S   +G+      P
Sbjct: 487 GGKIGVESREGEGSCFWFTHP 507


>gi|124026473|ref|YP_001015588.1| two-component sensor histidine kinase [Prochlorococcus marinus str.
           NATL1A]
 gi|123961541|gb|ABM76324.1| two-component sensor histidine kinase [Prochlorococcus marinus str.
           NATL1A]
          Length = 689

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 80/394 (20%), Positives = 170/394 (43%), Gaps = 40/394 (10%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            +++   ++  S++   +DG  +++ +G I+  N    +LF +   ++  +     L  +
Sbjct: 291 EELKAAQVKQQSLIATMADGALLLDEQGNIVLVNPTARRLFRWEGRNLEGQNLLNQLPDS 350

Query: 505 TPSVMNHYLTEILSL-DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
               +   +T +L+       L        +  +++   +           ++T+ D++ 
Sbjct: 351 LVKELETPITSLLNNFGDSDDLRCNLEEPPRTLRIVLKSVRDTTGENIKGIAVTVQDLTR 410

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             Q               ++ +  F++ VSHE+RTPL  I  + E + +     L     
Sbjct: 411 EVQL--------------NAAQKRFISNVSHELRTPLFNIKSYVETLYD-LGEQLTKDEQ 455

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            E+    +   + +  +VND+LD+SK+ESG+  +  E +S+ EA+ + +   +L A EK 
Sbjct: 456 KEFLGVANSETDRLTRLVNDVLDLSKLESGR-TIQLEALSIKEAMEQTLRNYKLNAEEKN 514

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN--------- 734
           + +  +  NN+  +L +   + Q+  N++ NA+ F+  GG I +      +         
Sbjct: 515 VKLILTVENNLTFVLGNWDMLLQVFDNLVGNALKFSQEGGIINLKAYTWPDICVASPVDL 574

Query: 735 -------------EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
                         ++ + V DTG G++  + ++  + F ++ +S      GTGLGL + 
Sbjct: 575 DNKAPHCEILSPMPKIRVEVSDTGYGISEIDQQRIFERFYRVEDSVHTEV-GTGLGLSIV 633

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
           K +VD +  +  + S P  GT      PL D+  
Sbjct: 634 KGIVDKHGSEIRMASEPNTGTTFWFELPLEDSDA 667


>gi|330921916|ref|XP_003299614.1| hypothetical protein PTT_10653 [Pyrenophora teres f. teres 0-1]
 gi|311326619|gb|EFQ92286.1| hypothetical protein PTT_10653 [Pyrenophora teres f. teres 0-1]
          Length = 666

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 94/494 (19%), Positives = 191/494 (38%), Gaps = 23/494 (4%)

Query: 324 ETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
           + +   P P   +     + + + S++ ++     + +              +    +  
Sbjct: 20  DLIRYTPAPTVILDPALFVRHVSDSYVNISGAGHRNSLVGRHADDVFDSNITIPAFTSAC 79

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             +    D       ++   I  ++  +  +  +P  +         +     E+   ++
Sbjct: 80  LAVRAAKD----TGKSQQEKIVTDKGAAWNLRAVPILRYGNLRCIQMEFLDVTEEHQRQL 135

Query: 443 NKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
              +   +      ++    D  I +++  G + + N       GY   +I+ K F+ F 
Sbjct: 136 EFEERSYQNETFQLLVATIRDYAIFMLDPGGHVATWNAGAQAFKGYTPAEIIGKHFSTFY 195

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTM 558
            Q           E+         E       K+       ++I  +   +    YS   
Sbjct: 196 SQEDCVRGKPE-RELKDALRDGRCEDEGWRLHKDGSRFWANVVITPVYKDNILLGYSKVT 254

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            D++E ++ +N L       E+ S  KS+FLA +SHEIRTP+  ++              
Sbjct: 255 RDLTERRRAENSLI---AAYEEASKLKSEFLANMSHEIRTPMHGMLSA----LTLLLDTK 307

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
            +    E A  I  SG+++L +++D+LD SK+ SG  ++  + +S+ E +     + Q  
Sbjct: 308 LDDNQRELARIIQESGDVLLQLIDDILDFSKLASGSFSISHDIISVREVIQSVFRVHQA- 366

Query: 679 ANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSG-GQIIISTTHTSNEE 736
            N+  + + +   + +PR    D    +QI  N+LSNA  FT +G  +I+       +E 
Sbjct: 367 CNKPEVKLESFLDDQLPRSAEGDPLRYRQIIQNLLSNATKFTKNGYVRIVAHLHKEDHEH 426

Query: 737 VIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
             +   V D+G+G+          PF Q  NS   R +GTGLGL + K++ +   G+   
Sbjct: 427 FTILTEVIDSGIGVPAGGAHTLFTPFTQFDNSATKRYKGTGLGLSICKSLAELMGGEIGF 486

Query: 795 FSTP-AKGTLIEII 807
              P  +G++    
Sbjct: 487 RPNPEGRGSIFWFT 500



 Score = 46.2 bits (108), Expect = 0.023,   Method: Composition-based stats.
 Identities = 16/136 (11%), Positives = 39/136 (28%), Gaps = 9/136 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI---DPNNHIGDLLKRQNT 142
            + +D  G++   +       G    ++IG                P   + D L+    
Sbjct: 159 IFMLDPGGHVATWNAGAQAFKGYTPAEIIGKHFSTFYSQEDCVRGKPERELKDALRDGRC 218

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
              +      +G+  +  + +   P+Y ++    G+    +                  +
Sbjct: 219 -EDEGWRLHKDGSRFWANVVI--TPVY-KDNILLGYSK--VTRDLTERRRAENSLIAAYE 272

Query: 203 KFSHLHEIKKGHSSVE 218
           + S L      + S E
Sbjct: 273 EASKLKSEFLANMSHE 288


>gi|150018795|ref|YP_001311049.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           beijerinckii NCIMB 8052]
 gi|149905260|gb|ABR36093.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           beijerinckii NCIMB 8052]
          Length = 783

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 98/535 (18%), Positives = 193/535 (36%), Gaps = 25/535 (4%)

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLT 352
           N S+ +   L+ +         +          +  P   FV S  G++   N     L 
Sbjct: 221 NTSEVTETVLNRKKVEEQMDAINIQNKEMEAIFESIPNGVFVRSKEGDILQQNEISRKLM 280

Query: 353 KYK-SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411
           +    V  +      +   +      +    P                +           
Sbjct: 281 EQSNDVKTLSGKYSEAKYFNEVGKEIDIEDMPSFRALKGERIKNQRITVLA----NGKEN 336

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471
            +        ++    +       +      N++K+     QL +I++  SDG+  I   
Sbjct: 337 ILAMSSSPIYDKENTVLMSVTAFDDITKVVSNEKKIRNNREQLKAIIDNMSDGVVAIGNC 396

Query: 472 GIILSTNRAVSKLFGY----PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
           G ++  N+A  K F         +   +    F             +  +      T  +
Sbjct: 397 GKLVMLNKAAEKHFNIIKIIEGRNKNDREIKYFDVDMNELSEYSLPSNRILRGEIITEYR 456

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM--HDISEWKQEKNKLSHAK---------- 575
           I +    E   + +          +     M   DI+E  +++  +              
Sbjct: 457 IIIKKYSENIYMCISGNPIYDDSGNFLFGMMCMKDITEKVKQEKLIKSQHDSVLLAELER 516

Query: 576 -KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
            +  EK  + K +FL+ +SHE RTPL  I    + ++   F  L N    +Y   I  + 
Sbjct: 517 NEALEKTIAMKDEFLSIISHEFRTPLNVINSAVQAMEYICFNELSNNT-KKYLGMIKLNT 575

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
              L +VN++LDI+        ++ + + +   +   +  V+ YA++K I +    +   
Sbjct: 576 FRQLRLVNNILDITSSNLKSTKINRKNIDIVFFIDVIVEAVRSYASKKEIGLILETSYKE 635

Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELE 754
             +  D    ++I LN+LSNAI FT    +I +         + + V D G+G+++ +++
Sbjct: 636 FMVAIDNEKFERILLNLLSNAIKFTSDNKKITVRFNALKEN-IFIEVSDEGIGISSDKID 694

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
              + FGQ+ +S   + EGTGLGL L K  V+   G+ ++ S   KG+   ++ P
Sbjct: 695 TIFEQFGQVDSSLSRQVEGTGLGLSLVKKFVEELGGRIFVNSKVGKGSAFIVMLP 749


>gi|330501102|ref|YP_004377971.1| alginate biosynthesis sensor protein KinB [Pseudomonas mendocina
           NK-01]
 gi|328915388|gb|AEB56219.1| alginate biosynthesis sensor protein KinB [Pseudomonas mendocina
           NK-01]
          Length = 598

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 95/578 (16%), Positives = 216/578 (37%), Gaps = 43/578 (7%)

Query: 236 MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN 295
           + +++  L +        L+T +     + E  +        I   +   + Y    +  
Sbjct: 61  LGDELIVLIDPQP-DAQRLETIRQSFRATFEEGINTNLGADYIRGLERAAELYDAMEKAA 119

Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYK 355
           S  +    +  N      + +  + L    +++            +     +       +
Sbjct: 120 SGGTPPGETPHNLGGYKPFTEAFQRLRNHLLEQ---------QDQVVNWVIAAEHKAGER 170

Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
           S   I     L+ L     +     +    + R     I    R        +  + +  
Sbjct: 171 S-QLIAGLLVLTGL----AVLAIGVLTAHGIARRFGAPIDMLVRAADQIGQGKYDVVLPV 225

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
            P  +             E        N  ++     +L ++L++  DG+ I++ +G I 
Sbjct: 226 SPVVELAVLSRRFG-LMTEALREYHSSNLNQLLSSEGRLKAVLDSIDDGLVILDEQGRIE 284

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTK 534
             N    +   +   DIL +P    L  +    ++  L ++L+ +L         +    
Sbjct: 285 HANPVALRQLSWHA-DILGQPIGPLLPDH---AVDEALRQVLAGELLYEPPADLQIERDG 340

Query: 535 EEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
           E +LL+  +   ++         + + D+++ +  +                +S+F+ R 
Sbjct: 341 ETRLLAWALTPVQVSEGGSVGAVMVLRDVTKQRAFE--------------RVRSEFILRA 386

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHE+RTP+T  +  +  +  +R     + R  E    +D   + ++ +++DLL+ S+ ++
Sbjct: 387 SHELRTPITG-MHMAFSLLRERLSLPSSGREQELMRTVDEEMHRLVQLIDDLLNFSRYQN 445

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712
           G   L   P  L E + +A         E+ + +       +PR+  D   ++++  N++
Sbjct: 446 GMQTLQRRPCDLAEMIRQAPQRFVEKTAEREVTLVCEVHEPLPRLSLDAAQLERLIDNLI 505

Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
            NA+ ++  G ++ +       E+VI+ V+D G G+   +  +  +PF Q+      R  
Sbjct: 506 DNALRYSNPGDEVRLQVR-RHGEQVIVSVQDDGEGIPFEQQARIFEPFVQV----GRRKG 560

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           G GLGL LA+ +V  + G+  + S P +G+      P+
Sbjct: 561 GVGLGLALAREIVQLHGGQLSVHSRPGEGSTFYFSLPV 598



 Score = 39.6 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 28/241 (11%), Positives = 67/241 (27%), Gaps = 9/241 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D  G ++  +    + +  +A  ++G  +  +     +D    +  +L      Y    
Sbjct: 277 LDEQGRIEHANPVALRQLSWHAD-ILGQPIGPLLPDHAVD--EALRQVLA-GELLYEPPA 332

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
              IE       +  A  P+        G     ++           +  R +      H
Sbjct: 333 DLQIERDGETRLLAWALTPVQVSEGGSVGA--VMVLRDVTKQRAFERV--RSEFILRASH 388

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           E+ +   +     + +  ++   P    + ++    +   H+   L  +       +   
Sbjct: 389 EL-RTPITGMHMAFSLLRERLSLPSSGREQELMRTVDEEMHRLVQLIDDLLNFSRYQNGM 447

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
              Q     +        Q F       + +     H   P LS    + E L    +D 
Sbjct: 448 QTLQRRPCDLAEMIRQAPQRFVEKTAEREVTLVCEVHEPLPRLSLDAAQLERLIDNLIDN 507

Query: 329 C 329
            
Sbjct: 508 A 508


>gi|228964549|ref|ZP_04125659.1| hypothetical protein bthur0004_13940 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228795149|gb|EEM42645.1| hypothetical protein bthur0004_13940 [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 591

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 79/371 (21%), Positives = 154/371 (41%), Gaps = 39/371 (10%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            ++ E  QL SIL + +DG+  +N+EG ++  N           E+       + L +  
Sbjct: 249 ALQQEKEQLASILSSMADGVITLNQEGEVVVINPPAEHFLQVWQEEK-----EIELSKKL 303

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
           PS +      ++  + +Q +E        +   + L   +            + D++E +
Sbjct: 304 PSELVELFHLVVESEQQQVVEINLQ----KGNYVVLMTPLYNQTKIRGAVAVLRDMTEER 359

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + +                + DF+A VSHE+RTP+  + G+SE I +            E
Sbjct: 360 RLE--------------KMRQDFIANVSHELRTPMVMLQGYSEAILDDIVQT--KEEIDE 403

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           +   I      +  +VN+LLD++++ESG + LH   V +   V +     Q  A +K + 
Sbjct: 404 FVQIIYDESVRLGKLVNELLDLARMESGNVELHIGEVDIHPFVEKIGRKFQGIAKDKEVA 463

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +   F ++I +   D   ++Q+  N++ NAI  T + G + +     +N  +I  V+D+G
Sbjct: 464 LTVDFKDSIEQYPFDADRMEQVLTNLIDNAIRHTNADGHVTLVIDSKNNG-LIFEVQDSG 522

Query: 746 VGMTNYELEKAMKPFGQIPNSQQI-------RGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
            G+   ++      F +   ++          G        +AK +V  + GK  + S  
Sbjct: 523 AGIPEEDIPFLFDRFYKADKARTRGKKGGTGLGL------AIAKNIVQGHDGKISVSSVV 576

Query: 799 AKGTLIEIIFP 809
            +GT   +  P
Sbjct: 577 GEGTTFSVYLP 587


>gi|218438951|ref|YP_002377280.1| multi-sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7424]
 gi|218171679|gb|ACK70412.1| multi-sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7424]
          Length = 658

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 90/434 (20%), Positives = 172/434 (39%), Gaps = 53/434 (12%)

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINK--RKMEIEVMQLCSILEATSDGIAIINREGI 473
           I      +  E +       E ++    +   +M  E  +L +++   +DG  +++    
Sbjct: 238 IDLPLGGELGELIGSFNEMAERLERYEEQNIEEMTAEKAKLDTLVSTIADGAILLDTNLS 297

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL-------- 525
           +L  N A  +LFG+   D++ K             +   L +    D  ++L        
Sbjct: 298 LLLVNPAARRLFGWENRDVIGKNVLHLFPPELTVTLTEPLYQFAVGDAVESLDAHFQSNF 357

Query: 526 --------------EKITLGSTKEEKLLSLRIIIKKL---PFSSCYSLTMHDISEWKQEK 568
                         E     +    + + + +              ++T+ DI+      
Sbjct: 358 QIQTITHENHSSQGEFRVTLTHPSPRTVRILLTQVFDQYRENVKGIAMTVQDITR----- 412

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
                      + +  KS F++ VSHE+RTPL  I  F E +         N R  E+  
Sbjct: 413 ---------EVELNEAKSQFISNVSHELRTPLFNIKSFIETLTEFGEDLTDNER-REFLE 462

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
             +   + +  +VND+LD+S++ES ++  HF+ V L + + + +   QL A +K I +  
Sbjct: 463 TANHETDRLTRLVNDVLDLSRLESSRI-YHFDAVDLSQLIEQVLRTYQLNAKDKNIELSQ 521

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE--------EVILR 740
               N+  +L     + Q+  N++ N++ FT  GG+I+I                +V + 
Sbjct: 522 EIEPNLSSVLGHYDLLLQVMTNLVGNSLKFTEPGGRIVIRAYKVKTHPDYPKKTPQVRVE 581

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV-DANMGKFYIFSTPA 799
           V DTG+G+   + +     F ++ N +    EGTGLGL + K ++ + +  K Y+ S   
Sbjct: 582 VSDTGIGIDLEDQQAIFDRFFRVEN-RVHTLEGTGLGLSIVKNIIEEKHHSKVYLISEVG 640

Query: 800 KGTLIEIIFPLYDT 813
            GT       +Y  
Sbjct: 641 VGTTFWFELDVYQE 654


>gi|117926350|ref|YP_866967.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117610106|gb|ABK45561.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1166

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 83/335 (24%), Positives = 147/335 (43%), Gaps = 26/335 (7%)

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS- 555
               +       +   L ++L+ +     +        + +L  +    + +  S     
Sbjct: 332 IHNHIPDPYKQQVIEQLEQVLTGNAVH-FQTEHPVRHADGRLTHVFARAEVIWESGVAVK 390

Query: 556 --LTMHDISEWKQEKNKLSHAKKI--------------AEKESSHKSDFLARVSHEIRTP 599
              T+ D++E K  + +L   K                AE+ +  KSDFLA +SHEIRTP
Sbjct: 391 MIGTVLDVTEQKLREQELDEGKLKLRTALEEREKALQCAEQANLAKSDFLANMSHEIRTP 450

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L AII  S +I           +   Y   I+ +G  +L ++ND+LD SKIE+G + L  
Sbjct: 451 LNAIINLSYLILQTPLTS----KQSNYLEKIESAGRTLLGVINDILDYSKIEAGHLVLDH 506

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHF 718
               LD+ +S   ++      +K + +      + P +++ D   +  + +N+ +NAI F
Sbjct: 507 VAFQLDDVISNVANIAIARKEDKDLDLLYHVTPSTPTQMMGDPMRLGAVLINLTNNAIKF 566

Query: 719 TPSGGQ-IIISTTHTSNEE--VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T  G   I +       +   +   V+DTG+G++  + ++  + F Q  +S   R  GTG
Sbjct: 567 TEHGEVVIRVDAKQQREQHYLLHFSVQDTGIGISAEQQKRLFQSFSQADSSISRRYGGTG 626

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           LGL ++K +V+   G   + S   +GT  E   PL
Sbjct: 627 LGLAISKKLVELMGGTLSLQSVVGQGTTFEFTIPL 661



 Score = 38.1 bits (87), Expect = 6.8,   Method: Composition-based stats.
 Identities = 10/141 (7%), Positives = 38/141 (26%), Gaps = 6/141 (4%)

Query: 319 ENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
           +    +TV      F+         +  ++  +              +   +  P     
Sbjct: 286 QLEMVQTVAHLGHWFWEIKPDRFVLSTEAY-HILAIDPAIAQPTVEMIHNHIPDPYKQQV 344

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
                 +L       +      H ++        +         +    +   G   +  
Sbjct: 345 IEQLEQVLT---GNAVHFQTE-HPVRHADGRLTHVFARAEVIW-ESGVAVKMIGTVLDVT 399

Query: 439 DTRINKRKMEIEVMQLCSILE 459
           + ++ +++++   ++L + LE
Sbjct: 400 EQKLREQELDEGKLKLRTALE 420


>gi|163792404|ref|ZP_02186381.1| PAS/PAC Sensor Signal Transduction Histidine Kinase [alpha
           proteobacterium BAL199]
 gi|159182109|gb|EDP66618.1| PAS/PAC Sensor Signal Transduction Histidine Kinase [alpha
           proteobacterium BAL199]
          Length = 374

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 115/376 (30%), Positives = 187/376 (49%), Gaps = 18/376 (4%)

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL---------FGYPVEDI 492
             +             +E+ +D  A+ +    ++  N    +L          G   E++
Sbjct: 2   EAQNAANYRHNLFIQAMESMTDAFALFDPADKLIFCNSRFKELNPDLAPDIYVGMTFEEM 61

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
           +R+        +     + +L   +      + E I     K+ ++L LR    +L   S
Sbjct: 62  VRRNLDSGRILDAVGKEDQFLKARMDAHRHPSGEAIV-SRRKDGQILLLRE--VRLEDGS 118

Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
            +     D +E +Q +  L  AK  AE  +  KSDFLA VSHE+RTPL AI+GFSE+IK+
Sbjct: 119 TFL-INSDQTELRQRETDLERAKNEAETANRAKSDFLANVSHELRTPLNAILGFSEIIKS 177

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
                L + RY +YA  I +SG  +L ++ND+LD++ IESG+  +  E ++L    +  +
Sbjct: 178 D---TLDSGRYPDYAAAIHKSGQHLLSLINDILDLNAIESGRFVISPERLNLHALTTSIV 234

Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
            +V+  A +  I +RT+   + P +L D R+++Q  LN+LSNAI F+  GG + +S    
Sbjct: 235 EMVRPIAQDAGIRLRTTVPKDFPAVLLDRRAMEQCLLNLLSNAIKFSHRGGAVDLSVGAA 294

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
               V + V DTGVGM +  ++   +PF        +   G GLGL + K++V A  G+ 
Sbjct: 295 PTGGVCIAVVDTGVGMASETIKAIGQPF--ASPGGHVDKRGAGLGLAITKSIVGAMKGEL 352

Query: 793 YIFSTPAKGTLIEIIF 808
            I STP +GT  EI+F
Sbjct: 353 EIQSTPGQGTRAEILF 368


>gi|83952587|ref|ZP_00961318.1| hypothetical protein ISM_10556 [Roseovarius nubinhibens ISM]
 gi|83836260|gb|EAP75558.1| hypothetical protein ISM_10556 [Roseovarius nubinhibens ISM]
          Length = 594

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 105/487 (21%), Positives = 192/487 (39%), Gaps = 29/487 (5%)

Query: 325 TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
            V+    P+ V+ HG LFYA  + L +    S+  +  A   +T+   P L     I   
Sbjct: 136 LVEDAAHPYVVFDHGPLFYAVAAGLYVFVLSSLGVLLYAFHRATVAIRPFLGVLLVITAA 195

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
                       SA    I W         F P               +    +     +
Sbjct: 196 ----------PLSANFAYIVW---GFTVFGFDPTPFMFTAALLAFSWLLTNNTMMDTEAQ 242

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            +          I  ATSD + I + E      N A +++FG P+           L   
Sbjct: 243 GR--------SLIFYATSDPVLITDSEFRFTGANPAATEIFG-PLLPKPGGSLRSLLALA 293

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564
                                ++I      E ++L +   I+       +++++ DI+E 
Sbjct: 294 PILNTLDRDQSTARGAPVPLADRIF-----EPRILPIESPIRTRRNLLGWTISLVDITER 348

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           +     L  A   AE  +  KS F+A +SHE+RTP+T++ G  + +    F    +    
Sbjct: 349 EHSAQALREALVRAEAANHAKSQFIAMISHELRTPMTSVKGGLD-LALNGFPGEPSEPIR 407

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           +  N   R+   +L +++D+LD+ K++   + LH   + +DE ++  +      A++ ++
Sbjct: 408 KLLNIAQRNSMRMLKLIDDVLDLQKLDLNTLRLHPVALDMDELLANLLEEHAGQADQAKV 467

Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744
            +         ++  D   V+Q+  N++SNAI F+P G  + +S        + L VRD+
Sbjct: 468 RLTIVSDKIGQQVHVDPNRVRQVVGNVISNAIKFSPEGAHVDLSVQLKPEA-LRLSVRDS 526

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G+     ++    F QI +       G+GLG+ +AK +++   G     S   +GT+ 
Sbjct: 527 GIGIPAKSEDRVFGRFHQIESDLTPTHGGSGLGMHIAKVLIERMGGAISYESVLGQGTVF 586

Query: 805 EIIFPLY 811
            I  PL 
Sbjct: 587 HIDLPLA 593


>gi|258645967|ref|ZP_05733436.1| putative sensor histidine kinase [Dialister invisus DSM 15470]
 gi|260403338|gb|EEW96885.1| putative sensor histidine kinase [Dialister invisus DSM 15470]
          Length = 664

 Score =  300 bits (769), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 73/371 (19%), Positives = 151/371 (40%), Gaps = 29/371 (7%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
             +E E     +IL+  SDGI ++N    I+  N  V ++F    +    +  +      
Sbjct: 228 EDIEEERNTTRTILDTISDGIILLNSRKEIVDYNERVKEIFHVEKDK-RFRRISFLYHDE 286

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF-SSCYSLTMHDISE 563
                   +      +  +                 +     +L        L + D++ 
Sbjct: 287 D---FLRAVGRAYRSERSREYTMTLF-----GNPFRMTTAKTELTDGEEGLLLVLSDMT- 337

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
                                + +F A VSHE++TPLT+I GF+E+I +  +        
Sbjct: 338 -------------ANYMAERMRREFSANVSHELKTPLTSISGFAEIISSGMYQ--SEEDL 382

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
             +   I    + ++ +++ ++ +SK+E  +  + ++PV +   V  A  L++  A++K 
Sbjct: 383 KVFGRRILDESHRMMSLIDTIMHLSKVEETETTIKWKPVEVAGLVRYAAELIKPQADKKN 442

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
           I++          +  +   + ++A+N+L NA+ +   GG + +      N E+++ V D
Sbjct: 443 IVVELDMKP--VHVYGNAALLSELAMNLLDNAVKYNHEGGHVTVKLAAE-NGEMVMTVSD 499

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TG+G+   +  +  + F +   S+     G+GLGL + K +V+ + G   I ST  +G  
Sbjct: 500 TGIGIPVDKQNRIFERFYRAEESRNKFTGGSGLGLAICKHIVEKHKGSLTISSTEGEGAT 559

Query: 804 IEIIFPLYDTS 814
             +  P    S
Sbjct: 560 FIVTLPAMSES 570


>gi|119490047|ref|ZP_01622671.1| two-component sensor kinase [Lyngbya sp. PCC 8106]
 gi|119454199|gb|EAW35351.1| two-component sensor kinase [Lyngbya sp. PCC 8106]
          Length = 641

 Score =  300 bits (769), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 80/266 (30%), Positives = 137/266 (51%), Gaps = 11/266 (4%)

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG-- 616
             ++E  Q    L  A   A+  +  KS+FLA +SHE+RTPLT +IG S  +        
Sbjct: 233 RRVTERTQA---LHDALLAAQSANRAKSEFLATMSHELRTPLTCVIGISATLLRLYSNGA 289

Query: 617 ---PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
               +   +  EY + I  SG  +L+++ND+L++S++E+GK  L     SL +   + + 
Sbjct: 290 GIKQISREKQQEYLHKIHDSGEHLLELINDILELSEVEAGKTILQISEFSLTKLAQKTLY 349

Query: 674 LVQLYANEKRILIRTSFA--NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
             +  A E  +L+ +      +    +AD R V+++  N+LSNAI FTP  GQ+ +    
Sbjct: 350 SFRERAQEHNVLLISDIQVKPDEDLFIADQRRVEKVLFNLLSNAIKFTPESGQVTLRVGV 409

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
             N   I +++DTG+G++  +     + F Q+ +S + +  GTGLGL L K +V+ + G 
Sbjct: 410 NKN-TAIFQIQDTGIGISEEQQPLLFEKFQQLDSSYRRQYSGTGLGLALTKQLVELHGGV 468

Query: 792 FYIFSTPAKGTLIEIIFPLYDTSHPH 817
             + ST   G+   +  P+  T  P+
Sbjct: 469 IKLTSTENVGSTFTVHIPIQPTPSPN 494


>gi|19115599|ref|NP_594687.1| histidine kinase Mak1 [Schizosaccharomyces pombe 972h-]
 gi|74625422|sp|Q9P7Q7|MAK1_SCHPO RecName: Full=Peroxide stress-activated histidine kinase mak1;
            AltName: Full=His-Asp phosphorelay kinase phk3; AltName:
            Full=Mcs4-associated kinase 1
 gi|7019768|emb|CAB75776.1| histidine kinase Mak1 [Schizosaccharomyces pombe]
          Length = 1639

 Score =  300 bits (769), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 101/510 (19%), Positives = 190/510 (37%), Gaps = 39/510 (7%)

Query: 321  LTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
            L    +D  P+  F      G L + N   LL       + IE        L   ++  +
Sbjct: 719  LLKVIIDSIPVHVFTADPGSGKLTWVNRKTLLYCGLNMNEQIE--------LQFSRIHPD 770

Query: 379  NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
            +    +  ++S     +       +Q                 +     +   G   +  
Sbjct: 771  DLPNFLNDWKSSLFSGSGFYHEIRLQRFDNVYRYFICRAVPLRDCTGSVLHFFGTMTDVH 830

Query: 439  DTRINKRKMEIE------VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
            D ++ +R+++ +           S+ EA+   +   N +  I+  N       G  +E  
Sbjct: 831  DQKLAERELQKQSAIAANENSYRSLAEASPQIVFAANGKNGIIYANAQWLSYSGLSLESS 890

Query: 493  LRKPFTVFLEQNTP------SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS-----L 541
            L   F   +             +          +  +T        + +          +
Sbjct: 891  LGLGFLSAVYHADRKKCLLPESLEGTFNNQDESNGTKTFAAEIRFRSTDGHYRWHLVKSV 950

Query: 542  RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
             +       ++ +  T  DI + K  + KL  +   A++    K  +L+ +SHEIRTPL 
Sbjct: 951  CVNNSADTSTNLWLGTCTDIHDHKMLEEKLQESNIEAQRIVRSKMQYLSNMSHEIRTPLI 1010

Query: 602  AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
             I G    +   +         + YA  I +S   +L ++ND+LD+SK+ +G M L  + 
Sbjct: 1011 GITGMVSFLLETQMSA----EQLSYARIIQQSAKSLLTVINDILDLSKVRAGMMKLTSQR 1066

Query: 662  VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTP 720
             S+   + +A   +   A  K I +  +   ++P  +  D   ++Q+ALN++ NAI FT 
Sbjct: 1067 FSVRAMMEDANETLGTLAFSKGIELNYTVDIDVPDIVFGDNMRMRQVALNVIGNAIKFTN 1126

Query: 721  SGGQIIISTTHTSNEE----VIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
             G ++    +    +     V+L     DTG G    +  +  KPF Q+ +S   R  G+
Sbjct: 1127 VG-EVFTRCSVEKIDYSTNTVVLKWECIDTGQGFNRDDQLQMFKPFSQVESSTLPRHGGS 1185

Query: 775  GLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
            GLGL ++K +V+ + G     S    GT  
Sbjct: 1186 GLGLVISKELVELHNGSMSCQSRRGVGTRF 1215


>gi|222095207|ref|YP_002529267.1| sensor histidine kinase rese [Bacillus cereus Q1]
 gi|221239265|gb|ACM11975.1| sensor histidine kinase ResE [Bacillus cereus Q1]
          Length = 580

 Score =  300 bits (769), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 81/371 (21%), Positives = 154/371 (41%), Gaps = 39/371 (10%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            ++ E  QL SIL + +DG+  +N+EG ++  N           E+       + L +  
Sbjct: 238 ALQQEKEQLASILSSMADGVITLNQEGEVVVINPPAEHFLQVWQEEK-----EIELSKKL 292

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
           PS +      ++  + +Q +E        +   + L   +            + D++E +
Sbjct: 293 PSELVELFHLVVESEQQQVVEINLQ----KGNYVVLMTPLYNQTKIRGAVAVLRDMTEER 348

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + +                + DF+A VSHE+RTP+  + G+SE I +            E
Sbjct: 349 RLE--------------KMRQDFIANVSHELRTPMVMLQGYSEAILDDIVQT--KEEINE 392

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           +   I      +  +VN+LLD++++ESG + LH   V +   V +     Q  A +K + 
Sbjct: 393 FVQIIYDESVRLGKLVNELLDLARMESGNVELHIGEVDIHPFVEKIGRKFQGIAKDKEVA 452

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +   F N I +   D   ++Q+  N++ NAI  T +GG + +     +N  +I  V+D+G
Sbjct: 453 LTVDFKNPIEQYPFDADRMEQVLTNLIDNAIRHTNAGGHVTLVIDTKNNG-LIFEVQDSG 511

Query: 746 VGMTNYELEKAMKPFGQIPNSQQI-------RGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
            G+   ++      F +   ++          G        +AK +V  + GK  + S  
Sbjct: 512 AGIPEEDIPFLFDRFYKADKARTRGKKGGTGLGL------AIAKNIVQGHDGKIAVSSVV 565

Query: 799 AKGTLIEIIFP 809
            +GT   +  P
Sbjct: 566 GEGTTFSVYLP 576


>gi|152994178|ref|YP_001339013.1| PAS/PAC sensor hybrid histidine kinase [Marinomonas sp. MWYL1]
 gi|150835102|gb|ABR69078.1| PAS/PAC sensor hybrid histidine kinase [Marinomonas sp. MWYL1]
          Length = 912

 Score =  300 bits (769), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 102/412 (24%), Positives = 178/412 (43%), Gaps = 46/412 (11%)

Query: 451 VMQLCSILEATSDG--IAIINREGII-LSTNRAVSKL-FGYPVEDILRKP-FTVFLEQNT 505
              L  +   + D   I  +   G   L  N A S++  G     I  +        +  
Sbjct: 17  KECLFQLWSHSDDLMFIVAVEENGEFSLYDNNAASRIAMGIEPNKIYHRNRIRDMFPEEI 76

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY-SLTMHDISEW 564
                    E ++     ++E+ T+   K+    +L + I     +  +     H+ ++ 
Sbjct: 77  VEGFYRTYREAITSRKPISIEQYTVNDGKDLFYNTLLVPIFDEQDNPAFICGISHETTKI 136

Query: 565 KQEK--------------------------------NKLSHAKKIAEKESSHKSDFLARV 592
           K  +                                  L  AK   E+    KS F+AR+
Sbjct: 137 KTAEKMAVEAGEKLKEYNVGLKQINDNLDAKVRERTAALELAKAELEEALEAKSSFVARM 196

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHEIRTP+ A+IG S++  N       +    +Y   I  SG+++L +VN++LD SKIE+
Sbjct: 197 SHEIRTPINAVIGLSDLALNT---SPNHKEQQDYLQKIRDSGDILLSLVNNVLDFSKIEA 253

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNI 711
           GK+       S ++ +   +++    A  K++ + T  A++IP  +L D   ++QI +N+
Sbjct: 254 GKLTAESVCFSTEKLIRTTVNMNVFGAYAKKLELVTDIADDIPEYLLGDPLRIQQILVNL 313

Query: 712 LSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
           +SNAI FT SG   I +       E ++L   V D+G+G+++ +LE+   PF Q  NS  
Sbjct: 314 VSNAIKFTESGSIVIRLRCNKLDGENILLQCEVSDSGIGISSTQLEQLFCPFTQADNSVT 373

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL-YDTSHPHDC 819
               GTGLGL + + + +   G+  + S   KG+   ++ PL   T  P + 
Sbjct: 374 RVYGGTGLGLTITRQLCELMNGEIKVESDVGKGSTFTVLLPLKVPTLQPKNA 425


>gi|86747750|ref|YP_484246.1| PAS/PAC sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris HaA2]
 gi|86570778|gb|ABD05335.1| PAS/PAC sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris HaA2]
          Length = 837

 Score =  300 bits (769), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 136/708 (19%), Positives = 245/708 (34%), Gaps = 43/708 (6%)

Query: 121 VSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN----REFS 176
           +     +  ++ +  LL +   +     L  +  +     I+     +  +     RE S
Sbjct: 155 LPPEPALQIDHAVDALLDKGEAF-----LLHLTTSTGRA-IEAMGRAVGGQAILRIRELS 208

Query: 177 GFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM 236
           G R        R   D     K L  +   L             +               
Sbjct: 209 GVR--------RELADMSRRFKMLQDETDMLRGFADAAPWPIWTRRASGELNFANAAYAR 260

Query: 237 KNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS 296
               SS  +      ++L +     L    +   E      I +    +      L+   
Sbjct: 261 AADASSPADAVGRNLELLDSTDRGNLARALAEDSEFAARLPIVVAGERRYFDVRALRLKG 320

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYK 355
             +   +      +L A           T+D+      V+     L + N S+  L    
Sbjct: 321 GSAGMAVDSSEAAALGAALVRMAEAHRRTLDQLSSGVAVFDAQRRLAFYNDSYRKLWD-- 378

Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS---ARLHTIQWNRENSLA 412
                     L          D++ +  +   R             RLH      E   A
Sbjct: 379 ----------LDRTFLDSHPDDSSVLDRLRAARKLPEERDFREWKNRLHEAYRAVEADKA 428

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL----CSILEATSDGIAII 468
           + ++P  +A        Q G      D       ++     L       L+  S+ +A+ 
Sbjct: 429 IWYLPDGRAISIVTTPNQEGGVTYLFDDVTESLDLQRRYGGLIDVQRETLDNLSEAVAVF 488

Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH-YLTEILSLDLRQTLEK 527
              G     N A ++++    E +  +P    +E     + +     + L   +    ++
Sbjct: 489 GSNGCAQLFNPAFTRMWNLSPEALNDRPHIETVEAWCRPLYDDDASWQALRGAITGIDDR 548

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
             +    E K  ++              LT  DIS+ +  +  L    +  E     K D
Sbjct: 549 KQVALKLERKDGTVLSCKTMPLPDGATMLTFQDISDTENVERALRERNEALETADRIKID 608

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           F+  VS+E+R+PLT IIGF+ ++ +   GPL N +  EY  YI  S N +L I+N++LD+
Sbjct: 609 FVHHVSYELRSPLTTIIGFAHLLGDPSTGPL-NDKQSEYIAYITSSTNALLAIINNILDL 667

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707
           + I++G M L+  P+ +   ++ A   +Q      +I +       I   + D R V Q+
Sbjct: 668 ASIDAGAMTLNLGPIEIRRTIAAAAEGIQDRLARDQITLDIDTDPAIGEFVGDERRVVQV 727

Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
             N+L+NAI F+P+   + +         V+  V D G G+     +K    F    +SQ
Sbjct: 728 LYNLLANAIGFSPNEATVKL-VVRKKGTNVVFTVTDAGPGIAPALKDKVFDLFE--SDSQ 784

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
             R  G GLGL L ++ V+ + GK  + S    GT +   FP+   + 
Sbjct: 785 GSRHRGPGLGLALVRSFVELHGGKVEVDSVVGHGTSVICEFPIEPGAQ 832


>gi|295107999|emb|CBL21952.1| Signal transduction histidine kinase [Ruminococcus obeum A2-162]
          Length = 968

 Score =  300 bits (769), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 96/365 (26%), Positives = 170/365 (46%), Gaps = 12/365 (3%)

Query: 460 ATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEI 516
              D   +++ +       +  V KL G+ VE I +           ++ +   +YL  I
Sbjct: 329 NVDDVFLMLDAKTYQADYVSPNVEKLMGFTVEQIRKDIYILGKLHPWDSENSKKNYLEGI 388

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKK 576
            + + ++   +     T E +   +  +  ++     Y L M D +  +     LS A +
Sbjct: 389 QTSEQQEWDFEYLHQKTGERRWFHIVAMGSEVNRKKKYILVMSDRTSDRNMNQALSEAVR 448

Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
            AE  +  KS FL+ +SH+IRTP+ AIIGF+ +  +         R  +Y   I  S N 
Sbjct: 449 AAETANKAKSTFLSNMSHDIRTPMNAIIGFTTLAVSNID---DKERVRDYLGKILSSSNH 505

Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS-FANNIP 695
           +L ++ND+LD+S+IESGK++L    VSL + + +  +++    + K++ +          
Sbjct: 506 LLSLINDILDMSRIESGKIHLEETEVSLSDILHDLKTIISGQIHAKQLELYMDAMDITNE 565

Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-----VILRVRDTGVGMTN 750
            +  D   + Q+ LN+LSNA+ FTP+GG + +        +       +RV+D G+GM+ 
Sbjct: 566 DVYCDKTRLNQVLLNLLSNAVKFTPAGGTVSVRIRQRPGTQKGSELYEIRVKDNGIGMSQ 625

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             ++K   PF +   S   R +GTGLG+ + K +VD   G   + +   KGT   +  P 
Sbjct: 626 EFVQKIFAPFERERTSTVSRTQGTGLGMAITKNIVDMMGGTIEVQTEQGKGTEFIVRLPF 685

Query: 811 YDTSH 815
              S 
Sbjct: 686 RIQSE 690


>gi|298527667|ref|ZP_07015071.1| multi-sensor signal transduction histidine kinase
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511319|gb|EFI35221.1| multi-sensor signal transduction histidine kinase
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 853

 Score =  300 bits (769), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 101/607 (16%), Positives = 217/607 (35%), Gaps = 34/607 (5%)

Query: 220 EKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTIN 279
           E +   +   P   + + ++     +      D   +    L  + E      ++     
Sbjct: 265 EIFRDEADSHPANLVHIPSRGMDAGDELNELTDAASSMAEHLRRTREQLRQYAQNLEVKV 324

Query: 280 LNQ-YTKKQYFGTLQNNSKESFEYLSHRNHPSLSA-----YFDEGENLTPETVDKCPI-- 331
             +    +     LQ   +   + L   N  +          +    +   T+   P   
Sbjct: 325 QERTRALRDSEERLQVQVRARNQELQTLNVLAELTTQAVGLSEILPQVLHWTLKTFPARG 384

Query: 332 -PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390
              ++Y                   +   ++     +++     L ++            
Sbjct: 385 AGIYLYDENQRMLVLQYHENSPGLSTKVPLQGQDLPASMYQPRNLEESIVQAACGQASYF 444

Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE----DVDTRINKRK 446
                +      +         MTF    +     E               V++  N  K
Sbjct: 445 DCRQNSGCLNIPLCCRGRVLGVMTFSGVNENELTSEMHSLLASIGRQIGIAVESLQNMEK 504

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
           +      L S+ +  +D + +++R+  I   NRA ++++   +++++ +           
Sbjct: 505 LLQSKELLQSVFDGITDQVILMDRDFRIKMVNRAYARMYNVDMDEVIGRRCYEIHGSGER 564

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKL-LSLRIIIKKLPFSSCYSLTMHDISEWK 565
              +  L E+L       L   T     E    +    ++ +          + +I++ K
Sbjct: 565 PCHDCGLNEVLKTRTPVVL--ETRCPAPEGIFQVHCYPVLDESGDVERVIRYVKEITDQK 622

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           Q + K+   +K+            A V+HEI  PL  I+ + E++K Q       P+  E
Sbjct: 623 QMEQKIQQTEKLV-----AMGQLAAGVAHEINNPLGVILCYVELLKRQFSEV---PQGQE 674

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
               I++       IV+DLL+ ++  SG+ + H    SL++ + E + +V     ++ + 
Sbjct: 675 DLVTIEKQARNCKRIVSDLLEFAR--SGETSKHTA--SLNQTLEEVLGMVGEQFKKQGVQ 730

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTP-SGGQIIISTTHTSNEEV-ILRVRD 743
           I T    ++P++  D   +KQ+ +N+L NA        G++ IST + + + +  +   D
Sbjct: 731 IETDLDPDLPQMEMDTNKIKQVFMNLLMNARQAMDGRDGKMHISTRYMAQDSLARVIFWD 790

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
            G G+  Y  +K   PF     S +  GEGTGLGL ++  ++  + G+  + S P + T 
Sbjct: 791 NGEGIPEYMQDKIFDPFF----STKRTGEGTGLGLSVSYGIIREHGGEIIVESRPGEWTR 846

Query: 804 IEIIFPL 810
             I  P+
Sbjct: 847 FVIELPV 853



 Score = 45.0 bits (105), Expect = 0.049,   Method: Composition-based stats.
 Identities = 14/109 (12%), Positives = 33/109 (30%), Gaps = 10/109 (9%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP--NNHIGDLLKRQNTWYGK 146
           +D    +K ++    +       ++IG R  ++       P  +  + ++LK +     +
Sbjct: 526 MDRDFRIKMVNRAYARMYNVDMDEVIGRRCYEI-HGSGERPCHDCGLNEVLKTRTPVVLE 584

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA 195
           T     EG        +   P+   + +    R    V           
Sbjct: 585 TRCPAPEG-----IFQVHCYPVLDESGDVE--RVIRYVKEITDQKQMEQ 626


>gi|254457575|ref|ZP_05071003.1| multi-sensor hybrid histidine kinase [Campylobacterales bacterium
           GD 1]
 gi|207086367|gb|EDZ63651.1| multi-sensor hybrid histidine kinase [Campylobacterales bacterium
           GD 1]
          Length = 736

 Score =  300 bits (769), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 80/241 (33%), Positives = 127/241 (52%), Gaps = 6/241 (2%)

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
            +L   KK AE  +  KS+FLA +SHEIRTP+  I+G + +          N +   Y  
Sbjct: 272 KELEIEKKKAEDATKIKSEFLANMSHEIRTPMNGILGMTHLALETDL----NDKQRNYIQ 327

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            ID S   +L ++ND+LD SKIE+GK+++     ++ E +   I +V+L A+EK + +  
Sbjct: 328 KIDNSAKSLLGVINDILDFSKIEAGKLSIEKADFNMSEVIENVIHVVELKADEKNLKLTV 387

Query: 689 SFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747
           ++  NI      D   ++QI +N+L NA+ FT SG ++ IS    S +     V DTG+G
Sbjct: 388 NYDKNISKYFYGDSLRLRQILINLLGNAVKFTDSG-EVSISLKKISKDRFRFEVSDTGIG 446

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           ++  +  K  K F Q   S   +  GTGLGL ++K +V+   GK ++ S    G+     
Sbjct: 447 LSQEKQSKLFKSFSQADGSITRKYGGTGLGLSISKQLVELLGGKIWVESKENIGSKFIFE 506

Query: 808 F 808
            
Sbjct: 507 I 507


>gi|168237284|ref|ZP_02662342.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|194734600|ref|YP_002115343.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|194710102|gb|ACF89323.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197289636|gb|EDY28999.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
          Length = 948

 Score =  300 bits (769), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 99/426 (23%), Positives = 172/426 (40%), Gaps = 35/426 (8%)

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
           +     L  I+      L +  I                 E        +  +   E  Q
Sbjct: 303 VPVDLVLERIR-----ILILNAILLNVLVGAGLFTLARMYERRIFIPAESDAQRLEEHEQ 357

Query: 454 L-CSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
               I+ +   GI I+   +G+ + +N            +  ++                
Sbjct: 358 FNRKIVASAPVGICILRTIDGVNILSNELAHTYLNMLTHEDRQR---------------- 401

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571
            LT+I+       ++      T     L +  +  +    +     + D+S   + +  L
Sbjct: 402 -LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSTRVKMEESL 456

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
               + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R       ++
Sbjct: 457 QEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR---LVTAMN 512

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
            S +L+L I++D+LD SKIES ++ +     S  E ++   +        K++ +     
Sbjct: 513 NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFIE 572

Query: 692 NNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
            N+P  +  D   ++Q+  N+LSNAI FT  G  I++       + + +RVRDTGVG+  
Sbjct: 573 PNVPVSLNGDPMRLQQVISNLLSNAIKFTDIG-CIVLHVRC-DGDYLSIRVRDTGVGIPA 630

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+   +  PL
Sbjct: 631 KEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTLRIPL 690

Query: 811 YDTSHP 816
           Y   +P
Sbjct: 691 YGAQYP 696


>gi|283850337|ref|ZP_06367626.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283574363|gb|EFC22334.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 943

 Score =  300 bits (769), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 103/667 (15%), Positives = 203/667 (30%), Gaps = 65/667 (9%)

Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD 251
           +       +     H  +      +V     +     +P    R        T     + 
Sbjct: 14  ERLETLYEMAPVMLHSIDATGRLLTVNARWLETLGYAAPDVIGRYLGDF--FTPASRTEF 71

Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
                                     +     +    F       +              
Sbjct: 72  QAALPRFLQAGALTAMPFQMAAKDGRVLDVLLSSVGEFDPAGRFIRSLAAIEDITARRRA 131

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
                + E L     +       + S  G L   N +       ++ + +          
Sbjct: 132 ERVLAKSEELFRMAFEGANEGLCIVSLEGRLLLVNEALCRFFGCQADNLVGKTIQELAHQ 191

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
           D   ++ ++ ++ +                   +     ++          +     +  
Sbjct: 192 DDKGITPHHIVRALS-----GGQEHFRFE-KRYRHASGRAVWARVSARLVRDAADAPLHF 245

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSIL-------EATSD--------GIAII------- 468
                +  +TR +  ++ +    L ++L       +   +         + +        
Sbjct: 246 ICHVLDVTETRHSTEQLSLHSKTLEALLRLGRMREDGLPELGAYAMSRAVVLTGSRSGIF 305

Query: 469 ---NREG---IILSTNRAVSKLFGYPVE-DILRKPFTVFLEQNTPSVMNHYLTEIL---- 517
              + +     +L+  R     FG   +             +   S              
Sbjct: 306 AMYDADKDTIRLLAAQRQALSAFGLSPDARCFGLREVELFARAWQSQHPVLANTTRVDEG 365

Query: 518 ---SLDLRQTLEKITLGSTKEEKLLSLRIIIK----KLPFSSCYS------LTMHDISEW 564
                       +  +    +E    L + +         +  +         +  + E 
Sbjct: 366 SRDDGRPGAPRGRYLIVPVADEAKSRLLVAVVDKDEPYDDADVHRLSLLGEGVLAHVKER 425

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
            + +  L  A++ AE  S  KSDFLA +SHEIRTPL+ IIG +++           P   
Sbjct: 426 SR-ERDLERARRQAEAASRAKSDFLANMSHEIRTPLSGIIGLTQM----TLSQTPRPEVR 480

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           E    I  S   +L IVND+LD SKIE+GKM        L EA+   +   Q  + +K +
Sbjct: 481 ENLEMILDSSRSLLGIVNDILDFSKIEAGKMEFSSVDFDLREALDRTMKPFQFSSRQKGL 540

Query: 685 LIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILR 740
            +    A+++P +L  D   + Q+  N++ NA+ FT  G ++ +        +   V   
Sbjct: 541 KLSVRIASDVPEVLNGDPDRIMQVVRNLVGNALKFTDQG-EVAVEFRLLRPGDPLLVECS 599

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           VRDTG+G+    L    + F Q+  S+  R  GTGLGL +++ +V+   G   + S    
Sbjct: 600 VRDTGIGIPEDRLPDLFQVFTQLEASRTKRFGGTGLGLAISRRLVEMMGGTIGVESRSNH 659

Query: 801 GTLIEII 807
           G+     
Sbjct: 660 GSTFSFT 666



 Score = 75.4 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 50/417 (11%), Positives = 114/417 (27%), Gaps = 47/417 (11%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147
           IDA G L  ++    +T+G  A  +IG  L D             +   L+         
Sbjct: 30  IDATGRLLTVNARWLETLGYAAPDVIGRYLGDFFTPASRTEFQAALPRFLQAGALTAMPF 89

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
            +   +G    + + L+++  +     F   R    +           +  + ++ F   
Sbjct: 90  QMAAKDGR--VLDVLLSSVGEFDPAGRFI--RSLAAIEDITARRRAERVLAKSEELFRMA 145

Query: 208 HEIKKGHSSVEKEKYDIFSQQSP---PPHLRMKNKVSSLTEYYAHKDDVLKT--EKYPLL 262
            E       +   +  +             +  N V    +  AH+DD   T       L
Sbjct: 146 FEGANEGLCIVSLEGRLLLVNEALCRFFGCQADNLVGKTIQELAHQDDKGITPHHIVRAL 205

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
           +  +     ++ +   +      +     +++ +     ++ H    + + +  E  +L 
Sbjct: 206 SGGQEHFRFEKRYRHASGRAVWARVSARLVRDAADAPLHFICHVLDVTETRHSTEQLSLH 265

Query: 323 PETVDKC-----------------------------PIPFFVYSHG----NLFYANPSFL 349
            +T++                                  F +Y        L  A    L
Sbjct: 266 SKTLEALLRLGRMREDGLPELGAYAMSRAVVLTGSRSGIFAMYDADKDTIRLLAAQRQAL 325

Query: 350 LLTKYKSVDD---IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
                        +      +    +      N  +     R D    A   R   +   
Sbjct: 326 SAFGLSPDARCFGLREVELFARAWQSQHPVLANTTRVDEGSRDDGRPGAPRGRYLIVPVA 385

Query: 407 RE-NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
            E  S  +  +  +       ++ +  +  E V   + +R  E ++ +     EA S
Sbjct: 386 DEAKSRLLVAVVDKDEPYDDADVHRLSLLGEGVLAHVKERSRERDLERARRQAEAAS 442


>gi|145250475|ref|XP_001396751.1| two-component system protein A [Aspergillus niger CBS 513.88]
 gi|134082271|emb|CAK42315.1| unnamed protein product [Aspergillus niger]
          Length = 673

 Score =  300 bits (769), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 107/533 (20%), Positives = 199/533 (37%), Gaps = 35/533 (6%)

Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANP 346
           +   L    K +  +          A                PIP   + S   +   + 
Sbjct: 6   HLAALSLEEKSATTHSVRVPDDDSPAVSPS----LACIYRHTPIPTIVLDSSMTIVEVSD 61

Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
           S L L+       +            P  +       +    S +           I  +
Sbjct: 62  SHLALSGKTRQSMLHATVRDLDPTAVPAPNIAILCGALRAACSTKEIQVVE----RIVSS 117

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD-GI 465
            ++   +   P          +    +E   +                  +++   +  I
Sbjct: 118 DKSLYNLRVTPIYNDF----TLLYIVLEAHKLSVETASINHAYTNETYKILVDTVKEYAI 173

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
            +++ +G I + N   + + G+P E+IL + F+VF            L  +        +
Sbjct: 174 FMLDTQGNITTWNPGAAIMKGWPAEEILGRHFSVFYSPEDRLAGKP-LRGLAVCLREGRM 232

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKES 582
           E       ++       ++I  +        +     D+SE K+ + ++       E+ S
Sbjct: 233 EDEGWRYRRDGSRFWANVLITPIYQFGQHVGFVKVTRDLSERKEAEARII---AAFEESS 289

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
             K+DFLA +SHEIRTP+  +     ++ +            E+A  I  S +L+L+ VN
Sbjct: 290 RLKTDFLANISHEIRTPMNGMKIAMTMLADTGLSAT----QREHAAIIQDSMSLLLETVN 345

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADL 701
           D+LD SK+ SG  +LH + V +++ V   I   +       + + T  A + PR +  D 
Sbjct: 346 DVLDYSKLSSGSFSLHSDVVDVNDVVGAVIRNCRPSLKS-GVELTTDIAPDFPRNLRGDP 404

Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE------VILRVRDTGVGMTNYELEK 755
              +QI  N++ NA+ FT SG  I +ST  + +E+      V   V DTG+G+ +  L  
Sbjct: 405 LRYRQILQNLVGNAVKFTESG-HIRVSTVCSPDEQEEGCCLVRTEVTDTGIGVPDNALNT 463

Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP-AKGTLIEII 807
              PF +  NS   + +GTGLGL + K++ +   G+      P  +G++    
Sbjct: 464 LFTPFTRFANSSTRQYQGTGLGLSICKSLAELMDGEVGYSPNPEGRGSVFWFT 516



 Score = 55.4 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/124 (12%), Positives = 38/124 (30%), Gaps = 7/124 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG--DLLKRQNTW 143
            + +D  G +   +       G  A +++G                 +    +  R+   
Sbjct: 173 IFMLDTQGNITTWNPGAAIMKGWPAEEILGRHFSVFYSPEDRLAGKPLRGLAVCLREGRM 232

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +   +  +G+  +  + +   PIY +  +  GF    +        +  A      ++
Sbjct: 233 EDEGWRYRRDGSRFWANVLI--TPIY-QFGQHVGF--VKVTRDLSERKEAEARIIAAFEE 287

Query: 204 FSHL 207
            S L
Sbjct: 288 SSRL 291


>gi|254235203|ref|ZP_04928526.1| hypothetical protein PACG_01093 [Pseudomonas aeruginosa C3719]
 gi|126167134|gb|EAZ52645.1| hypothetical protein PACG_01093 [Pseudomonas aeruginosa C3719]
          Length = 699

 Score =  300 bits (769), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 89/571 (15%), Positives = 189/571 (33%), Gaps = 40/571 (7%)

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ--NNSKESFEYLSHRNHPSLSAYFD 316
                                  + +       LQ  ++S+     +     P +     
Sbjct: 4   AGRAGVFRKVGQVPGASQRAAGRRSSYYLAGCALQPGSSSRRVNTSMKTTRKPKVPLNQA 63

Query: 317 EGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
               L  E VD   I   + S G +   +     L  + + + +      +         
Sbjct: 64  TRNRLLDEAVDDYAIH-TLDSAGRIASWSAGAARLFGHDASEILGR--DYACFHTRKDRD 120

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
                + +    ++            ++ N +   A   I     +   + +    +  +
Sbjct: 121 AGVPQQALRQADAEGR---FETEGWRVRSNGKRFWAQVVIDAI-RDSQGQLLGFAQLIHD 176

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
             + R  K  +     Q   ++++ +D  I +++  G I + N    ++ GY  E+++ +
Sbjct: 177 LSEGRAAKEALRRSQEQFRLLVQSVTDYAIYMLDHRGRITNWNLGAQRIKGYLPEEVIGR 236

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555
            F+ F               + + +     EK      K+       ++I  +  S    
Sbjct: 237 HFSCFYTPEDREAGEPA-RGLAAAEREGRFEKEGWRVRKDGSRFWANVVIDPIRDSDGRL 295

Query: 556 L----TMHDISEWKQEKNKLSHAKKIAEKESSH--KSDFLARVSHEIRTPLTAIIGFSEV 609
           +       DI+   + + +L  A++   +             V+H+    LT IIG   +
Sbjct: 296 IGFAKVTRDITHRIEAERELERARQELFQAQKMESLGHLTGGVAHDFNNLLTVIIGSLGL 355

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           +K +  G   + R  +       +     ++   +L  ++    K  L  +P ++ + + 
Sbjct: 356 LKKRLPG---DQRTADLLQNALEAAQRGANLTQRMLSFAR----KQRLDPQPCAIPDLLR 408

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
               L+        + I T F  ++   L D   ++   +N+ +NA    P+GG+I+ S 
Sbjct: 409 GMTDLLIHSL-GPSVSIETRFPLDLDLGLTDANQLELSIINLATNARDAMPNGGRIVFSA 467

Query: 730 -----------THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
                             + L + DTG GM    L +A++PF          G GTGLGL
Sbjct: 468 SNQRVPADNPHRLAPGNYICLSISDTGSGMDEETLRRAVEPFYTTKG----IGRGTGLGL 523

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            +   + +   G+  + S P  GT   I  P
Sbjct: 524 SIVDGLAEQLGGRLTLESQPGVGTTANIWIP 554



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/244 (10%), Positives = 73/244 (29%), Gaps = 8/244 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D+ G +   S    +  G+ A +++G            D       L +       +T 
Sbjct: 81  LDSAGRIASWSAGAARLFGHDASEILGRDYACFHTRKDRDAGVPQQALRQADAEGRFETE 140

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
            W +          +    I     +  GF    ++H        +   +R  ++F  L 
Sbjct: 141 GWRVRSNGKRFWAQVVIDAIRDSQGQLLGFAQ--LIHDLSEGRAAKEALRRSQEQFRLLV 198

Query: 209 EIKKGHSS-VEKEKYDIFSQQSPPPHLR--MKNKVSS--LTEYYAHKDDVLKTEKYPLLT 263
           +    ++  +   +  I +       ++  +  +V     + +Y  +D         L  
Sbjct: 199 QSVTDYAIYMLDHRGRITNWNLGAQRIKGYLPEEVIGRHFSCFYTPEDREAGEPARGLAA 258

Query: 264 SEESSLPEQEDFH-TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
           +E     E+E +    + +++        ++++      +       +     +      
Sbjct: 259 AEREGRFEKEGWRVRKDGSRFWANVVIDPIRDSDGRLIGFAKVTRDITHRIEAERELERA 318

Query: 323 PETV 326
            + +
Sbjct: 319 RQEL 322



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 24/239 (10%), Positives = 50/239 (20%), Gaps = 5/239 (2%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + +D  G +   +    +  G    ++IG            +       L   +     
Sbjct: 206 IYMLDHRGRITNWNLGAQRIKGYLPEEVIGRHFSCFYTPEDREAGEPARGLAAAEREGRF 265

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +   W +         ++   PI   +    GF       V R         + L++   
Sbjct: 266 EKEGWRVRKDGSRFWANVVIDPIRDSDGRLIGF-----AKVTRDITHRIEAERELERARQ 320

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
            L + +K  S             +    +     +         +   L           
Sbjct: 321 ELFQAQKMESLGHLTGGVAHDFNNLLTVIIGSLGLLKKRLPGDQRTADLLQNALEAAQRG 380

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
            +       F                L+  +      L            D    LT  
Sbjct: 381 ANLTQRMLSFARKQRLDPQPCAIPDLLRGMTDLLIHSLGPSVSIETRFPLDLDLGLTDA 439


>gi|300903337|ref|ZP_07121265.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 84-1]
 gi|301301546|ref|ZP_07207681.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 124-1]
 gi|300404632|gb|EFJ88170.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 84-1]
 gi|300843043|gb|EFK70803.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 124-1]
 gi|315256223|gb|EFU36191.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 85-1]
          Length = 431

 Score =  300 bits (769), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 74/427 (17%), Positives = 151/427 (35%), Gaps = 37/427 (8%)

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             +L       I     L  + W     L +         +        G+    +  + 
Sbjct: 33  WFLLASVTGLLIWHFWNLLRLSW----WLWVDRSMTPPPGRGSWEPLLYGLHQMQLRNKK 88

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            +R++   + +  S  E+  D + +   EG I   N    ++ G    +   +     L 
Sbjct: 89  RRRELGNLIKRFRSGAESLPDAVVLTTEEGGIFWCNGLAQQILGLRWPEDNGQNILNLLR 148

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
               +               +   +         + L +R++           +   D++
Sbjct: 149 YPEFTQYL----------KTRDFSRPLNLVLNTGRHLEIRVMPYTHKQ---LLMVARDVT 195

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  Q +                + +F A VSHE+RTPLT + G+ E++  Q  G     +
Sbjct: 196 QMHQLEG--------------ARRNFFANVSHELRTPLTVLQGYLEMMDEQPLGGAVREK 241

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                + +      +  +V  LL +SKIE+    L  E V +   +       Q  + +K
Sbjct: 242 A---LHTMREQTQRMEGLVKQLLTLSKIEAAPTQLLNEKVDVPMMLRVVEREAQTLSQKK 298

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           +        N + ++  +   ++    N++ NA++ TP G  I +      +      V 
Sbjct: 299 Q-TFTFEIDNGL-KVSGNEDQLRSAISNLVYNAVNHTPEGTHITVRWQRVPHG-AEFSVE 355

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G G+    + +  + F ++  ++  +  G+GLGL + K  V+ +  +  I ST  KGT
Sbjct: 356 DNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHAVNHHESRLNIESTVGKGT 415

Query: 803 LIEIIFP 809
               + P
Sbjct: 416 RFSFVIP 422


>gi|283782020|ref|YP_003372775.1| histidine kinase [Pirellula staleyi DSM 6068]
 gi|283440473|gb|ADB18915.1| histidine kinase [Pirellula staleyi DSM 6068]
          Length = 926

 Score =  300 bits (769), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 75/251 (29%), Positives = 136/251 (54%), Gaps = 6/251 (2%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E + +   L  A+  AE+ +  KS F+A +SHEIRTP+TAI+G+ +++ +       + +
Sbjct: 476 EMQFQAKALEAARSEAERANHTKSQFVANMSHEIRTPMTAILGYVDMLLDDADAHPVSEK 535

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
           + +    I  +G  +L+I+ND+LDISKIE+GK+ +     S+ + V +  +L++  A  K
Sbjct: 536 WKQPLATIKSNGQHLLEIINDILDISKIEAGKLTIEIIECSVPQLVGDVTNLLRHRAEGK 595

Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH----TSNEEV 737
            + +   F + IP  I +D   ++Q+ LN++ N+I FT  G ++ +          N ++
Sbjct: 596 GLALAVKFNSPIPETIHSDPTRIRQVLLNLVGNSIKFTNHG-EVRVELEMFYDDPENPQL 654

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
            L V D+G+GM + ++ +  +PF Q  +S   R  GTGLGL + K + +   G   + S 
Sbjct: 655 QLSVVDSGIGMDDEQIARLFQPFVQADSSTTRRFGGTGLGLTITKRLAEMLGGSITVKSQ 714

Query: 798 PAKGTLIEIIF 808
              G+   +  
Sbjct: 715 IGHGSSFIVRI 725


>gi|254420052|ref|ZP_05033776.1| PAS fold family [Brevundimonas sp. BAL3]
 gi|196186229|gb|EDX81205.1| PAS fold family [Brevundimonas sp. BAL3]
          Length = 709

 Score =  300 bits (769), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 113/557 (20%), Positives = 207/557 (37%), Gaps = 31/557 (5%)

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
           +  + LP   D     +           L      S ++L H   P+L A + +  +   
Sbjct: 10  AGGAPLPLILDAIVRGVEADHPDMVCSIL--LLDASGQHLLHGAAPNLPAVYTQAIDGVA 67

Query: 324 ETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
                       Y+   +  A+     L    +   +    GL++    P L   N    
Sbjct: 68  IGPSAGSCGTAAYTGRRIVVADIQTDPLW--DAFKHLARDAGLASCWSEPILGAGN---- 121

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
               R   T       +     +    +         A +  E +    I     +    
Sbjct: 122 ----RLLGTFAMYHRTVREPTADDLGDILAAAHLAAIAIERKEALDALAISQVRAER--A 175

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
               ++      ++   + D ++I++ +GI+++ N +   + GYP   ++   F   L  
Sbjct: 176 TADAQVLSRDFETLFTVSQDLLSIVDADGILINLNPSWETVLGYPQGRLIGTSFFDLLHP 235

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
           +           +           +T     +     +   ++             D++E
Sbjct: 236 DDVESAVAVSPRLQVSGEAHYS--VTRCRCADGTYKHIEFRVRA--SDHRVFCVGRDVTE 291

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             Q +  L  AK  AE  +  KSDFLA +SHE+RTPL  +IG  + +             
Sbjct: 292 HIQAEADLRAAKAEAEAANRAKSDFLANMSHEVRTPLNGVIGIVDALARTELSSA----Q 347

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            E    I  SG+ +  +V+D LD+SK+E+G++ L      L+E +   + + ++ A+ K 
Sbjct: 348 REMVTLIQGSGSTLERLVSDFLDVSKVEAGRLELEIREFDLEEVLRGVLEIARIRADAKG 407

Query: 684 ILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE------ 736
           +  R  +       +  D   ++QI  N+LSNA+ FT  G ++ +               
Sbjct: 408 LAFRVDYGPTARGLLQGDSVRIRQILDNLLSNAVKFTSDG-EVSVRIEVLEGATPDDPTG 466

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           + + VRDTGVG  +       + F Q   +   R  GTGLGL + KA+V+A  G+ +  S
Sbjct: 467 LSVEVRDTGVGFDSTT-ATPFERFSQTDKTITRRFGGTGLGLTIVKALVEAMGGEIHAES 525

Query: 797 TPAKGTLIEIIFPLYDT 813
            P  G +  I+ PL  +
Sbjct: 526 QPGAGAVFSIVIPLARS 542



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/247 (9%), Positives = 58/247 (23%), Gaps = 16/247 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK-RQNTWYGKT 147
           +DA G L  ++      +G    ++IG    D+     ++    +   L+      Y  T
Sbjct: 200 VDADGILINLNPSWETVLGYPQGRLIGTSFFDLLHPDDVESAVAVSPRLQVSGEAHYSVT 259

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                +GT  ++   + A          S  R F +           A  +    +    
Sbjct: 260 RCRCADGTYKHIEFRVRA----------SDHRVFCVGRDVTEHIQAEADLRAAKAEAEAA 309

Query: 208 HEIKKGHSSVEKEKYD-----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
           +  K    +    +       +           + +    +          L+      L
Sbjct: 310 NRAKSDFLANMSHEVRTPLNGVIGIVDALARTELSSAQREMVTLIQGSGSTLERLVSDFL 369

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
              +      E        +   +      +  +            P+            
Sbjct: 370 DVSKVEAGRLELEIREFDLEEVLRGVLEIARIRADAKGLAFRVDYGPTARGLLQGDSVRI 429

Query: 323 PETVDKC 329
            + +D  
Sbjct: 430 RQILDNL 436


>gi|109898421|ref|YP_661676.1| multi-sensor hybrid histidine kinase [Pseudoalteromonas atlantica
           T6c]
 gi|109700702|gb|ABG40622.1| PAS/PAC sensor hybrid histidine kinase [Pseudoalteromonas atlantica
           T6c]
          Length = 1042

 Score =  300 bits (769), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 85/397 (21%), Positives = 162/397 (40%), Gaps = 27/397 (6%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           +++     +  +I+ A+ D I  ++  G + S N A   L      D++ K        +
Sbjct: 362 KQLADARAESAAIVSASKDAIISVDLTGRVKSWNNAAKGLLSLSAVDVIGKTLMELRVFD 421

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDIS 562
               ++     + +   +  +E            L+L               ++   D++
Sbjct: 422 DIE-LSDIFERLSNKHRQLNIETQIESQENSPIFLALSFSPIANSEDRIEGIAIIARDVT 480

Query: 563 EWK-----------QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
           + +           + + K++      +K S  KS F++ +SHE+RTPL  IIG   ++K
Sbjct: 481 QERIADEKIKQANAELEEKVALRTVELQKASGIKSAFISNISHEMRTPLNGIIGTLNLVK 540

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
            +      +     Y    + S N +  +VND+LD+SKIE+GK++L  +P +    +   
Sbjct: 541 REHL----SENQQRYIEMTEVSVNTLSTLVNDVLDLSKIEAGKLDLDIKPFNPVNLIESL 596

Query: 672 ISLVQLYANEKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
              + + A EK +      +  N   +++D     QI  N+++NAI FT +G  I +S  
Sbjct: 597 CGSMAVKAQEKGLEFIIDVSALNYQSMVSDPHRFSQILTNLVNNAIKFTETG-YIKVSAH 655

Query: 731 HT---SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
                    +   + D+G G+     +K    F Q  +S   +  GTGLGL + + +V  
Sbjct: 656 TELVKDKVHLHCAIADSGEGIAKENQDKLFSAFSQADSSVASKHGGTGLGLSICRQLVTL 715

Query: 788 NMGKFYIFSTPAKGTLIEIIFP----LYDTSHPHDCI 820
             G+    S   +G++          L   S P  C+
Sbjct: 716 LKGEVNFTSQKNQGSVFYFSISADANLCQLSPPSTCL 752


>gi|302876207|ref|YP_003844840.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           cellulovorans 743B]
 gi|307686939|ref|ZP_07629385.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           cellulovorans 743B]
 gi|302579064|gb|ADL53076.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           cellulovorans 743B]
          Length = 547

 Score =  300 bits (768), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 91/489 (18%), Positives = 195/489 (39%), Gaps = 28/489 (5%)

Query: 341 LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400
           +F  +     +    S   + +   ++T+  + + +   ++  ++    +        R+
Sbjct: 33  IFDCSEIVYEIFGVDSSHGMNLEIWVNTIYPSDRPAFEASLCEIV---KNGDDFDVEYRI 89

Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK-------MEIEVMQ 453
                       +        +++       GI  +  + + ++ +        + +   
Sbjct: 90  VNQT--DRTIRWLKAKGKLYYDKYGALEKAVGIIQDISELKESEERYKNLYIKFQQKQAF 147

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
           L S++++  D     + +G+    N+A     G   E ++ K      ++ T        
Sbjct: 148 LTSLIDSIPDFFFYKDIDGVYQGCNKAFEVFAGIKEEKLIGKRDLEVFDKETAESFRGRD 207

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKN 569
            E++  +    L         + K+L +  +      S            DI+E  +++ 
Sbjct: 208 LEVIRQNKH--LRNEEWIKYPDGKVLLVDTLKTPYYDSQGNIMGLIGISRDITEKYKQEE 265

Query: 570 ------KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
                 +        E+    K+DF A +SHE+RTP   I    +V + +    L     
Sbjct: 266 LQKSIDEERRRISELEEYDRIKTDFFANISHELRTPTNVIFSALQVQELKLKKYLSKESC 325

Query: 624 IE---YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
            E   Y   + ++   +L ++N+L+DI+KI++  + ++   +++   +      V  Y  
Sbjct: 326 TEMYGYTKMMKQNCYRLLRLINNLIDITKIDTMYVEINEVNINIINLIENITMSVADYIE 385

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
           +K + +          I  D   +++I LN+LSNA+ FTP GG I+++    + E V +R
Sbjct: 386 DKGLSLIFDTEVEEKVIACDPEKIERIMLNLLSNAVKFTPMGGNIMVNIE-DATENVCIR 444

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V+DTG G+   +L    + F Q+  S     EG+G+GL L K++V+ + G   + S+   
Sbjct: 445 VKDTGRGIPKEKLNSIFERFVQVDKSFTRDHEGSGIGLSLVKSLVELHGGTISVKSSEGY 504

Query: 801 GTLIEIIFP 809
           GT   I  P
Sbjct: 505 GTEFIIYIP 513


>gi|302341625|ref|YP_003806154.1| PAS/PAC sensor signal transduction histidine kinase [Desulfarculus
           baarsii DSM 2075]
 gi|301638238|gb|ADK83560.1| PAS/PAC sensor signal transduction histidine kinase [Desulfarculus
           baarsii DSM 2075]
          Length = 685

 Score =  300 bits (768), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 88/448 (19%), Positives = 169/448 (37%), Gaps = 36/448 (8%)

Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKA--NQFPENMPQNGIEPEDVDTRINKRK 446
           +          L  + W    +  +  +    A   +         +  E V  R  +  
Sbjct: 251 ALEEESVWEHMLGHLHWILGPAALIFLLAMAWAWSLRRKVAQRTGELRGELVARRRAEAD 310

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
           ++     L ++++++SD I  ++    IL  N A  ++FGY   + L K  T  L  +  
Sbjct: 311 LQQSQESLRALVDSSSDAILSLDPARHILRCNPAFLRMFGYAEAEALGKS-TRILHLSHE 369

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SLTMHDIS 562
           +           +          +  TK+ + L + + +  +             + DIS
Sbjct: 370 NFERLGREAYAVIGASGHWLGEVVLQTKDGRELPVELALSAIRDPDGRTTGHVAIIRDIS 429

Query: 563 EWKQEKNKLSHAKKIAEKES--SHKSDFLARVSHEIRTPLTAIIGFSE-VIKNQRFGPLG 619
           + +Q + + +  +                  ++H+    L AI+G++E  + + + G   
Sbjct: 430 QRRQAEQEKARLEDQLRHAQKMEAIGTLAGGIAHDFNNILGAIMGYAELSLLDAQEGKTS 489

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
             +       I  S     D+V  +L  S+    K+     P+   E +  A+ L++  A
Sbjct: 490 PEK----LRNILTSSKRARDLVRQILTFSR----KLTPDMRPLRPREVILHALELLRP-A 540

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII------------ 727
             + + IR   A+++P I  D+  ++Q+ +N+ SNA    P GG + I            
Sbjct: 541 IPRMVEIRCRLADDLPLIAGDVTQLEQVLINLASNASDAMPDGGVLTIKAAARQLSPQEA 600

Query: 728 -STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
                     V++ V DTG GM    +E+   PF          G+GTGLGL  A  ++ 
Sbjct: 601 AELALRPGLHVVIAVSDTGHGMDKQTMEQIFDPFFTTK----EVGKGTGLGLATAFGVIK 656

Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           A+ G     S P +GT+  +  P  + S
Sbjct: 657 AHAGAITCQSEPGRGTVFTLYLPAAEPS 684



 Score = 70.8 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 29/281 (10%), Positives = 79/281 (28%), Gaps = 9/281 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMR--LCDVSDILHIDPNNHIGDLLKRQNTWYGK 146
           +D   ++   +    +  G    + +G    +  +S             ++     W G+
Sbjct: 332 LDPARHILRCNPAFLRMFGYAEAEALGKSTRILHLSHENFERLGREAYAVIGASGHWLGE 391

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
             L   +G    +P++LA   I   +   +G     I+              RL+ +  H
Sbjct: 392 VVLQTKDGR--ELPVELALSAIRDPDGRTTGH--VAIIRDISQRRQAEQEKARLEDQLRH 447

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSP---PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
             +++   +      +D  +          L + +     T     ++ +  +++   L 
Sbjct: 448 AQKMEAIGTLAGGIAHDFNNILGAIMGYAELSLLDAQEGKTSPEKLRNILTSSKRARDLV 507

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
            +  +   +       L       +   L   +      +  R    L     +   L  
Sbjct: 508 RQILTFSRKLTPDMRPLRPREVILHALELLRPAIPRMVEIRCRLADDLPLIAGDVTQLEQ 567

Query: 324 ETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364
             ++           G +     +   L+  ++ +     G
Sbjct: 568 VLINLASNASDAMPDGGVLTIKAAARQLSPQEAAELALRPG 608



 Score = 65.8 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 20/200 (10%), Positives = 42/200 (21%), Gaps = 9/200 (4%)

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL--SHRNHPSLSAYFD 316
                 E              L       +  +L+    +    L           A   
Sbjct: 253 EEESVWEHMLGHLHWILGPAALIFLLAMAWAWSLRRKVAQRTGELRGELVARRRAEADLQ 312

Query: 317 EGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
           + +      VD              +   NP+FL +  Y   + +  +   + +L     
Sbjct: 313 QSQESLRALVDSSSDAILSLDPARHILRCNPAFLRMFGYAEAEALGKS---TRILHLSHE 369

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
           +     +                 L T        L +        +          I  
Sbjct: 370 NFERLGREAYAVIGASGHWLGEVVLQT---KDGRELPVELALSAIRDPDGRTTGHVAIIR 426

Query: 436 EDVDTRINKRKMEIEVMQLC 455
           +    R  +++      QL 
Sbjct: 427 DISQRRQAEQEKARLEDQLR 446


>gi|281207530|gb|EFA81713.1| histidine kinase [Polysphondylium pallidum PN500]
          Length = 1347

 Score =  300 bits (768), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 93/382 (24%), Positives = 171/382 (44%), Gaps = 19/382 (4%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           R++E +  +  S+ + +++ + +  + G I   N A   +F   ++D+L    +      
Sbjct: 470 REIERKEERNQSLFKISNEALVVH-KGGFITDANAAFESMFQIKLQDMLYPVPSGI--WE 526

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM--HDIS 562
               +    ++  S+D        T       +   + +   K  ++          DI+
Sbjct: 527 FLPDLESIYSQDGSMDTPLPPVIETTAIDSGGRAFDVEVRTNKATYAGKPVDVFSIIDIT 586

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
             K    +   A + AE  +  K  FL  +SHE++TP+  I+   E+++        +  
Sbjct: 587 GRKNL-IEADVALRKAEAANEAKVVFLTTISHELKTPINGIMASCEILERSNL----DAG 641

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             E+ + I  S N +  +V D+LD SK+E+GKM L  +  SL + + + +S+V   A  K
Sbjct: 642 QREFLDAIRMSSNYLYSLVLDILDYSKMEAGKMELVLDDFSLLKMLEDTLSMVSKNAQPK 701

Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE------ 735
            + +     +N+P  +  D   V+QI LN++SNAI FT  G QI I              
Sbjct: 702 GLDLVGFVDSNVPVLVHGDATRVRQILLNLISNAIKFTDEG-QIKIRVKLDREITETKEY 760

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
           +++  V D+G+G+ N  +     PF QI +S   + +GTGLGL ++K + +   G+ ++ 
Sbjct: 761 QLLFEVEDSGIGIKNEHIVLLFTPFSQIDSSNSRKYQGTGLGLSISKRLANMMDGEVFVN 820

Query: 796 STPAKGTLIEIIFPL-YDTSHP 816
           S    G+       L Y  S P
Sbjct: 821 SDFGIGSTFSFTIRLGYPVSKP 842


>gi|189468425|ref|ZP_03017210.1| hypothetical protein BACINT_04822 [Bacteroides intestinalis DSM
           17393]
 gi|189436689|gb|EDV05674.1| hypothetical protein BACINT_04822 [Bacteroides intestinalis DSM
           17393]
          Length = 497

 Score =  300 bits (768), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 103/509 (20%), Positives = 191/509 (37%), Gaps = 25/509 (4%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
           P +         +  +  D  P+    +     ++  N       +     DI     + 
Sbjct: 3   PDIPQEVRIVNAIAEQLFDVWPVSIVMIDLEDRIWRMNKQMSDELQQD--ADIIGKPVVD 60

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
            L       +        L+   ++ I  S+    ++    +   +         +    
Sbjct: 61  MLEVVQDRENVLPRYLQDLHEGRQSIIHLSSNCFMLEPK-RHISFLIQGALMGIYEENRL 119

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
           +         ++    K  + I + +   I +         + E  ++  +    +  G 
Sbjct: 120 VRIVLYYRNVLEESTRKHLLNIALSR-TQIFQ------WSYDMERNLMIIDPRYFEYLGI 172

Query: 488 PVED--ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI-- 543
           P  D  +  + F   +  +    +   L  +                  +          
Sbjct: 173 PTRDYTLTPEEFAYLMHPDDRQSVFDAL-TLQLDGSLYEAPVEYRLRRDDGSWEWFEAQS 231

Query: 544 -IIKKLPFSSCYSLTMHDISEW-KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
             + +L  +    + +   ++  K  + +L+ A + A +    KS FLA +SHEIRTPL 
Sbjct: 232 TYVGQLKETPFRVVGICMSTQKYKDTEERLNEALRKARRSDELKSIFLANMSHEIRTPLN 291

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           AI+GFS ++       L     IE+ + I+++  L++ +++D+LD+SKIES  M   F  
Sbjct: 292 AIVGFSSLLAYGESD-LTKEDIIEFTSLIEKNSRLLMVLISDILDLSKIESNTMEFSFCS 350

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           VSL   ++E I   Q     + + +          +  D   + Q+  N+++NAI FT  
Sbjct: 351 VSLHRVLNE-IGSAQRINMREGVELLLDLPGQEVTVYTDPARLSQVINNLVNNAIKFTSE 409

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           G  I I     ++  V + V DTG GM+   LE     F +  + +    +GTGLGL + 
Sbjct: 410 G-NIRIGYRPAASGYVNIFVEDTGTGMSREVLEHIFDRFYKGDSFK----QGTGLGLSIC 464

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           K +V    GK  + STP KGT   I  PL
Sbjct: 465 KTIVKRFEGKIEVTSTPGKGTCFTITLPL 493


>gi|167646931|ref|YP_001684594.1| multi-sensor signal transduction histidine kinase [Caulobacter sp.
           K31]
 gi|167349361|gb|ABZ72096.1| multi-sensor signal transduction histidine kinase [Caulobacter sp.
           K31]
          Length = 634

 Score =  300 bits (768), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 92/640 (14%), Positives = 203/640 (31%), Gaps = 35/640 (5%)

Query: 182 GIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKY---DIFSQQSPPPHLRMKN 238
           G V   R  N   AL        +           +  E +            P +    
Sbjct: 7   GQVR-TRALNRAAALSLATRYGGAVAAVAVAAMVRLAMEPWLEHRSPYLLFTAPVVAAVA 65

Query: 239 KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE 298
                    A    ++    +    + E S P      ++ L     + +    +  + E
Sbjct: 66  FGGLGPALVAAALGLVAGVVFSGSLAAEPSAPLMFVLVSVALILVGGEIHRLRRRFVASE 125

Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVD 358
                       ++   +   +   E        + +   G +   N     L  +   +
Sbjct: 126 QRAVERAATAGRIARELNLLIDGAAEYA-----IYMLDPQGRVLIWNAGAERLKGWSEAE 180

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
            I     +     A   +    ++ +    +         RL        +         
Sbjct: 181 IIGQDAAV--FYPADARAAGKPMEDLRRAEAVGKLEQEDWRLR----KDGSEFLAHVSIT 234

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
              ++         +  +  D R ++  ++     L SIL    D + +I+  G ILS +
Sbjct: 235 ALYDEEGALQGFGKVVRDVTDQRASEHALQASTNHLQSILSTVPDAMIVIDEHGAILSFS 294

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT--LEKITLGSTKEE 536
            A  +LFGY   +++    +  + +   +  + YL   ++   R+   + ++ +G  ++ 
Sbjct: 295 AAAERLFGYAEAEVIGSNISRLMPEPDQTRHDGYLQRYVATGERRIIGIGRVVVGLKRDG 354

Query: 537 KLLSLRIIIKKLPFSSCYS--LTMHDISEWKQEKNKLSHAKKIAEKESS--HKSDFLARV 592
               + + + +            + D+++ ++ + +L   +      +         + +
Sbjct: 355 ATFPMELSVGEARGEGQRVFTGFIRDLTDRRRTQARLEELQSELIHVARVSAMGTMASTL 414

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGN--PRYIEYANYIDRSGNLVLDIVNDLLDISKI 650
           +HE+  P+TA+  + E I++    P  +  P   +              IV  L D    
Sbjct: 415 AHELNQPITAVANYVEAIRDLLAQPEPDDLPMIRDALGEAASQAMRAGHIVRRLRDF--- 471

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710
              +  +      L   V EA++L  L A E  +            +L D   ++Q+ +N
Sbjct: 472 -VARGEVEKTVEDLPALVDEAVALGLLGAREDGVKASFDLDPQARLVLVDKVQIQQVLIN 530

Query: 711 ILSNAIHFTP--SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
           +  NA+  T   +  Q+   +         + V DTG G+     E+    F        
Sbjct: 531 LARNAVQATEGCAQRQVTFRSRQEPGGLTRMTVADTGCGVPPGVAEQLFTAFVTT----- 585

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            + EG GLGL + + +V+AN G+ +       G+      
Sbjct: 586 -KAEGMGLGLSICRTIVEANGGRIWFEPREGGGSQFHFTL 624



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/354 (9%), Positives = 71/354 (20%), Gaps = 8/354 (2%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + +D  G +   +    +  G    ++IG     V             + L+R      
Sbjct: 154 IYMLDPQGRVLIWNAGAERLKGWSEAEIIGQDAA-VFYPADARAAGKPMEDLRRAEAVGK 212

Query: 146 KTTL-WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
                W +          ++   +Y       GF    +V             +      
Sbjct: 213 LEQEDWRLRKDGSEFLAHVSITALYDEEGALQGFGK--VVRDVTDQRASEHALQASTNHL 270

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHL--RMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
             +         V  E   I S  +    L    + +V          +         L 
Sbjct: 271 QSILSTVPDAMIVIDEHGAILSFSAAAERLFGYAEAEVIGSNISRLMPEPDQTRHDGYL- 329

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
                +  E+       +    K+         S         R          +     
Sbjct: 330 -QRYVATGERRIIGIGRVVVGLKRDGATFPMELSVGEARGEGQRVFTGFIRDLTDRRRTQ 388

Query: 323 PETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
               +       V     +     +                  +  LL  P+  D   I+
Sbjct: 389 ARLEELQSELIHVARVSAMGTMASTLAHELNQPITAVANYVEAIRDLLAQPEPDDLPMIR 448

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
             +   + +   A         +     +  T             +   G   +
Sbjct: 449 DALGEAASQAMRAGHIVRRLRDFVARGEVEKTVEDLPALVDEAVALGLLGARED 502


>gi|189191800|ref|XP_001932239.1| autoinducer 2 sensor kinase/phosphatase luxQ [Pyrenophora
            tritici-repentis Pt-1C-BFP]
 gi|187973845|gb|EDU41344.1| autoinducer 2 sensor kinase/phosphatase luxQ [Pyrenophora
            tritici-repentis Pt-1C-BFP]
          Length = 2314

 Score =  300 bits (768), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 119/742 (16%), Positives = 236/742 (31%), Gaps = 109/742 (14%)

Query: 160  PIDLAALPIYSRNREFSGFRGFGIV-------HVNRVDNDPRALGKRLDKKFSHLHEIKK 212
            P D +    +S     +G  G+                    A  + ++  F    +  K
Sbjct: 1126 PSDYSGRSKHSPGGSIAGTPGWDATSLGFSSKQSVSSTPGHLAGSEAVESYFDARKQYTK 1185

Query: 213  GHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
              +   +++    + + P        +  +V   T    ++ +   + +   L    S  
Sbjct: 1186 SLTQSAQDQCARKTDKRPTKRVTMNPVAEQVGEDTSKSRNEKEDTLSARRVPLQDPSSRN 1245

Query: 270  PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
                  +  +     +     T      ++ +  + R+  S        E+L    +D  
Sbjct: 1246 HSYLHSYGADFTSSFQSLPAATTPGGRPQASQTHARRSSISDVDMPPPSESLLRTIIDSL 1305

Query: 330  PIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
            P+  F  +   G + + N  FL+     S   ++                 + ++     
Sbjct: 1306 PVQIFTAAPTTGVITWVNSKFLIYRGQTSGQVLQNPWDA-----MHPEDRGSYLEEWSRS 1360

Query: 388  RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR-- 445
                  +    RL       +             N+  + +   G   +  +  + ++  
Sbjct: 1361 LRTGQQLQKKVRLQRF---DQCYRWFYVRVAPLKNKRQQIVHWIGTNMDFHEQHLAEQNS 1417

Query: 446  ----KMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
                +      +  ++  ++   + ++ +R G +   N       G    + L   F   
Sbjct: 1418 ARQQETAASEAKYRALANSSPQIVFVVSDRRG-LTFCNSQWISFSGQSEANALGNGFLEH 1476

Query: 501  LEQNTPSVMNHYLTEILSLDLRQT-------------------LEKITLGSTKEEKLL-S 540
            +  +   V+   L E+    +                       E     ++        
Sbjct: 1477 VHPDD--VIKCKLPELDEHGVANVPTTLPSDHGQHDSSSSDASSETERTITSPSGSAPDR 1534

Query: 541  LRIIIKKLP--FSSCYSLTMHDISEW------KQEKNKLSHAKKIAEKESSHKS------ 586
            + +   KL    S+     + D           + +NK    +    +    KS      
Sbjct: 1535 MDMPQAKLSKLASTGILRVVKDAHGRPSYSTEVRLRNKDGDYRWHLVRVLLEKSLAENNN 1594

Query: 587  -----------------------------DFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
                                          FL+ +SHEIRTPL  I G    + +     
Sbjct: 1595 EETWYGSATDINDHKLLEQTLKETMDAKSKFLSNMSHEIRTPLNGISGMVNFLLDSVL-- 1652

Query: 618  LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
              N   +E+ N I  S + +L+++ND+LD+SK+E+G + L  E + L   + E   L   
Sbjct: 1653 --NAEQLEHVNIIKASTDSLLNLINDILDLSKVEAGMIKLSMEWLHLPSLLEEVNDLNMG 1710

Query: 678  YANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
             A +K + +       +P  +  D   ++Q+ LN++ NAI FT  G +I I       + 
Sbjct: 1711 LAIQKGLELNYLVEEGVPAEVKGDKFRIRQVLLNVVGNAIKFTERG-EIFIRCKVQPPDR 1769

Query: 737  ----------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
                      V   V DTG G T+ E +   K F QI  S   +  GTGLGL ++   V+
Sbjct: 1770 SPPLKENETMVRFEVIDTGQGFTDAEAKYLFKRFSQIDASSTRQHGGTGLGLAISMQFVE 1829

Query: 787  ANMGKFYIFSTPAKGTLIEIIF 808
             + G+    S P KG+      
Sbjct: 1830 LHGGRMDARSAPGKGSTFFFTI 1851


>gi|260868935|ref|YP_003235337.1| hybrid sensory kinase RcsC in two-component regulatory system with
           RcsB and YojN [Escherichia coli O111:H- str. 11128]
 gi|257765291|dbj|BAI36786.1| hybrid sensory kinase RcsC in two-component regulatory system with
           RcsB and YojN [Escherichia coli O111:H- str. 11128]
          Length = 933

 Score =  300 bits (768), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 98/495 (19%), Positives = 184/495 (37%), Gaps = 41/495 (8%)

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
             P+   +             + LT  +S    +                    + ++L 
Sbjct: 223 TLPMGVTILDENGHT-----LISLTGPESKIKGDPRWMQERSWFGY----TEGFRELVLK 273

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV---DTRINK 444
           ++      +      +    E    +              +       E         + 
Sbjct: 274 KNLPPSSLSIVYSVPVDKVLERIRMLILNAILLNVLAGAALFTLARMYERRIFIPAESDA 333

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGII-LSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            ++E        I+ +   GI I+     + + +N            +  ++        
Sbjct: 334 LRLEEHEQFNRKIVASAPVGICILRTADSVNILSNELAHTYLNMLTHEDRQR-------- 385

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                    LT+I+       ++      T     L +  +  +    +     + D+S 
Sbjct: 386 ---------LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSS 432

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + +  L    + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R 
Sbjct: 433 RVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR- 490

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
                 ++ S +L+L I++D+LD SKIES ++ +     S  E ++   +        K+
Sbjct: 491 --LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQ 548

Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           + +      ++P  +  D   ++Q+  N+LSNAI FT +G  I++       + + +RVR
Sbjct: 549 LGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTG-CIVLHVR-ADGDYLSIRVR 606

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTGVG+   E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+
Sbjct: 607 DTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGS 666

Query: 803 LIEIIFPLYDTSHPH 817
              +  PLY   +P 
Sbjct: 667 QFTVRIPLYGAQYPQ 681


>gi|217425387|ref|ZP_03456881.1| sensory box histidine kinase [Burkholderia pseudomallei 576]
 gi|217391638|gb|EEC31666.1| sensory box histidine kinase [Burkholderia pseudomallei 576]
          Length = 723

 Score =  300 bits (768), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 96/615 (15%), Positives = 208/615 (33%), Gaps = 27/615 (4%)

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
           +   L  ++      + E       +        +  VSS           +   +    
Sbjct: 111 QQQRLATLRMLLEKKQHELAATIELRKTEGFDAAQAIVSSDAGKIFMDRARVMVNEMEAT 170

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD---EGE 319
             ++     ++                G L      SF Y+  R     +A      E  
Sbjct: 171 V-QQQLRTLRDRARATRDIAIGVGLASGLLTLAVCVSFGYVMRRLLLVEAAAAHDLFEQR 229

Query: 320 NLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
            L   T+             G + + N     +T   +   +        L+     +  
Sbjct: 230 ELLHVTLASIGDGVIATDVGGRITFFNRVAEEMTALCADAVVGQPIE-RVLMFRHATTQR 288

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
               P  +    R   +  A    +  +    L +        +   + +    I  +  
Sbjct: 289 VIDNPARVAVERRRTASLPAHTRFVGRSGGE-LPVDGNAAPTFDANGKLVGAVLIVRDVS 347

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
           +    + +  +        +EA    + ++ R+G I+  N    KLFGY   D++     
Sbjct: 348 ERERAEERFRLA-------VEAAPTAMIMVGRDGRIVLVNSQAEKLFGYARGDMIGHGID 400

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556
           + + +   +    +          + +   +   G  ++     + I +  +  S    +
Sbjct: 401 MLVPERFRAGHWAHRDAFFGNPDARPMGEGRDLFGLRRDGSEFPVEIGLNPITTSEGAFV 460

Query: 557 T--MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
              + DI+  K+ + +L    +   + +     F    SH+++ PL A+ G  ++++ + 
Sbjct: 461 LCSIADITARKRAELELRRRSEELARSNQDLEQFAYVASHDLQEPLRAVAGPLQLLQRRY 520

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
            G L + R  E+  +       +  +++DLL  S++  G++     PV  +  + EA+  
Sbjct: 521 QGQL-DARADEFIGHAVDGATRMQSLIDDLLSYSRV--GRLEDARRPVDCEHVLDEALRN 577

Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST-THTS 733
           +     E    +       +P +      +  +  N++ NAI F        I    HT 
Sbjct: 578 LSAAIRESGAQVTHD---PLPTVHGIEAQLVLLFQNLIGNAIKFRGKDRVARIHLEAHTR 634

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
           ++  +LRVRD G+G+     E+    F ++    +    GTGLGL L K +V+ + G+ +
Sbjct: 635 DDAWLLRVRDNGIGIDPQYFERIFLIFQRLH--TRREYPGTGLGLALCKRIVEHHGGRIF 692

Query: 794 IFSTPAKGTLIEIIF 808
           + S P +GT      
Sbjct: 693 VESEPGQGTTFSFTL 707



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/353 (9%), Positives = 76/353 (21%), Gaps = 19/353 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL----KRQNTWY 144
           +   G +  ++ +  K  G     MIG  +  +        +    D        +    
Sbjct: 370 VGRDGRIVLVNSQAEKLFGYARGDMIGHGIDMLVPERFRAGHWAHRDAFFGNPDARPMGE 429

Query: 145 GKTTL-WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
           G+       +G+    P+++   PI +    F        +             +R  ++
Sbjct: 430 GRDLFGLRRDGS--EFPVEIGLNPITTSEGAFV----LCSIADITARKRAELELRRRSEE 483

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
            +  ++  +  + V         +    P   ++ +     +  A +      +    + 
Sbjct: 484 LARSNQDLEQFAYVASHDLQEPLRAVAGPLQLLQRRYQGQLDARADEFIGHAVDGATRMQ 543

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYF---GTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
           S    L        +   +            L+N S    E  +   H  L         
Sbjct: 544 SLIDDLLSYSRVGRLEDARRPVDCEHVLDEALRNLSAAIRESGAQVTHDPLPTVHGIEAQ 603

Query: 321 LTPETVDKCPIPFFVYSHGN-----LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
           L     +                  L         L + +             +    + 
Sbjct: 604 LVLLFQNLIGNAIKFRGKDRVARIHLEAHTRDDAWLLRVRDNGIGIDPQYFERIFLIFQR 663

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
                  P                   I    E     TF          E  
Sbjct: 664 LHTRREYPGTGLGLALCKRIVEHHGGRIFVESEPGQGTTFSFTLSRPGADETR 716



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/250 (9%), Positives = 56/250 (22%), Gaps = 13/250 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI----GDLLKRQNTWY 144
            D  G +   +    +     A  ++G  +  V    H      I       ++R+ T  
Sbjct: 246 TDVGGRITFFNRVAEEMTALCADAVVGQPIERVLMFRHATTQRVIDNPARVAVERRRTAS 305

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNR---VDNDPRALGKRLD 201
                  +  +   +P+D  A P +  N +  G     IV          +   L     
Sbjct: 306 LPAHTRFVGRSGGELPVDGNAAPTFDANGKLVGA--VLIVRDVSERERAEERFRLAVEAA 363

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
                +         V  +   +F            + +        H          P 
Sbjct: 364 PTAMIMVGRDGRIVLVNSQAEKLFGYARGDMIGHGIDMLVPERFRAGHWAHRDAFFGNPD 423

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
                            + +++  +     +  +       L      +     +     
Sbjct: 424 ARPMGEGR--DLFGLRRDGSEFPVEIGLNPITTSEGAF--VLCSIADITARKRAELELRR 479

Query: 322 TPETVDKCPI 331
             E + +   
Sbjct: 480 RSEELARSNQ 489


>gi|94270344|ref|ZP_01291716.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93450841|gb|EAT01870.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 404

 Score =  300 bits (768), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 71/255 (27%), Positives = 128/255 (50%), Gaps = 10/255 (3%)

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           +   +     + A+  +  KS+FLA +SHEIRTP+  +IG + ++  +      +     
Sbjct: 152 EAAVQAEELAREAQAANIAKSEFLANMSHEIRTPMNGVIGMASLLLAEDL----SDEQRS 207

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           YA  I  SG  +L+++N +LD SKIE+G++ L   P S  E + E   L+Q  A  + I 
Sbjct: 208 YAQIIMSSGQALLELINQILDFSKIEAGRLELDCRPFSPRELIQEVAVLLQPQAAAQNIT 267

Query: 686 IRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNE----EVIL 739
           + +  +  +P ++  D   ++Q+ LN++ NAI FT  GG  + +S            +  
Sbjct: 268 LTSEVSPGVPAVVEGDPVRLRQVLLNLVGNAIKFTEIGGVAMELSPAPADPAAPHCSLHF 327

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V+D+G+G+   +L+   + F Q+  S   +  GTGLGL + + +++   G+  + S   
Sbjct: 328 AVKDSGIGIPAEKLDLLFQRFQQVDGSTCRKYGGTGLGLAICRRLMELMGGEIGVESEEG 387

Query: 800 KGTLIEIIFPLYDTS 814
           KG+      PL   +
Sbjct: 388 KGSTFWFTVPLRPHA 402


>gi|83955168|ref|ZP_00963824.1| two-component hybrid sensor and regulator [Sulfitobacter sp.
           NAS-14.1]
 gi|83840497|gb|EAP79670.1| two-component hybrid sensor and regulator [Sulfitobacter sp.
           NAS-14.1]
          Length = 550

 Score =  300 bits (768), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 101/520 (19%), Positives = 187/520 (35%), Gaps = 40/520 (7%)

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIA 363
           ++       A  D+        +    +   V +   L   N   L  T Y   + I   
Sbjct: 57  ANVRATPARATVDDSVAQQLRVLKMHTMVNVVDTDNLLVEVNDLLLEATGYTRQELIGKP 116

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
             ++ L      +       +               L   +    ++           + 
Sbjct: 117 --VAMLYSKDNRT---TATEIRDLLRQGKSWQGETTL---RNRDGSTCVTQTTVTPLLDA 168

Query: 424 FPENMPQNGIEPEDVDTRI--NKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRA 480
               +       +   T     +R   + + +L        D I I++ +   +   N A
Sbjct: 169 NGRWIGSISARTDITSTTKLIARRDTAMTLHELR-------DDIWIVSEDNLELRYMNLA 221

Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY-LTEILSLDLRQTLEKITLGSTKEEKLL 539
               FG+       +       +     +    L  +   D   T      G+  E  + 
Sbjct: 222 AKARFGWSTRPKNGQTVRDMAAERGCEDVLDACLRMMDIGDTYMTFSATISGTNFEGSIK 281

Query: 540 SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
            L     K        + +HD++E  +++                ++DF++ VSHE+R+P
Sbjct: 282 WLN----KGTVDGRLLIMLHDVTERLEQE--------------RLQADFISMVSHELRSP 323

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           LT+I G   ++ ++  G L  P+         R+ + ++ I+ND+LD+ KI SG+++   
Sbjct: 324 LTSIKGSMGLLLSKAAGQLP-PKAEGLLEIAHRNADRLVLIINDILDMEKISSGRLDFEL 382

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719
           E   L E V+E++           + I+    +    I  D   + Q+  N++SNA  F+
Sbjct: 383 ETADLSELVAESLRANATAHQRFGLQIKCHGVDTPTYIETDANRIIQVLTNLMSNAAKFS 442

Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
             GG + IS   T    V + VRD G+G+   +  K  + F  + NS +    GTGLGL 
Sbjct: 443 KPGGTVEISVEKTPEN-VCVSVRDEGMGIAPEDQHKIFQRFADMANSDRATKGGTGLGLS 501

Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFPL-YDTSHPHD 818
           + KA+V+   G     S   +GT      P+    S P +
Sbjct: 502 ICKAIVEGLGGTIDFVSKEGRGTTFTFTLPVKTRHSGPEN 541



 Score = 60.0 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 51/143 (35%), Gaps = 8/143 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D    L E+++ L +  G    ++IG  +  +    +      I DLL++  +W G+TT
Sbjct: 88  VDTDNLLVEVNDLLLEATGYTRQELIGKPVAMLYSKDNRTTATEIRDLLRQGKSWQGETT 147

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           L   +G+       +   P+   N  + G          R D                LH
Sbjct: 148 LRNRDGSTCVTQTTV--TPLLDANGRWIGSI------SARTDITSTTKLIARRDTAMTLH 199

Query: 209 EIKKGHSSVEKEKYDIFSQQSPP 231
           E++     V ++  ++       
Sbjct: 200 ELRDDIWIVSEDNLELRYMNLAA 222


>gi|299821622|ref|ZP_07053510.1| sensor histidine kinase [Listeria grayi DSM 20601]
 gi|299817287|gb|EFI84523.1| sensor histidine kinase [Listeria grayi DSM 20601]
          Length = 601

 Score =  300 bits (768), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 75/368 (20%), Positives = 162/368 (44%), Gaps = 28/368 (7%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            ++ E  Q  ++L   +D +   + E  I+ +N    +             +    E  T
Sbjct: 250 ALQQEKEQFSNVLIGMADAVIKFDVEQTIILSNPPAEEFL---------HHWFFSSENET 300

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
             ++   L+E+++  + Q  E     +  ++  +++  ++          + + D++E +
Sbjct: 301 RVLVPPVLSELIAKAVEQKQEITGELTVDDKTYVAILTLLYDGTIIRSIVVVLRDMTEER 360

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + +                K+DFL  VSHE+RTP++ + G+SE I +             
Sbjct: 361 RLE--------------KMKTDFLNNVSHELRTPISMLQGYSEAIIDGV--AQNEEEVRA 404

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           +A  I      +  +VN++LD++++E+G  NL  +  SL    ++  + +Q+ A E  + 
Sbjct: 405 FAEIIYEESLRIGRLVNEMLDLARMEAGFTNLDKKAGSLTALANKVTANLQVLAEENHVS 464

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFT-PSGGQIIISTTHTS-NEEVILRVRD 743
           +  S A        D   ++Q+ +N++ NAI  T   G +  ++       + + + ++D
Sbjct: 465 LAVSSAPADIPYFFDQDRMEQVFINLIMNAIQHTGREGHEGKVAVQLEKLEDRIKIAIQD 524

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQI-RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
            G G++  ++    + F +   ++     +GTG+GL + K +VDA+ G   + S   KG+
Sbjct: 525 NGAGISEADIPYLFERFYKADKARIRGETKGTGIGLAIVKNIVDAHGGYIKVESVLGKGS 584

Query: 803 LIEIIFPL 810
              I  PL
Sbjct: 585 SFIIQLPL 592


>gi|150388839|ref|YP_001318888.1| PAS/PAC sensor signal transduction histidine kinase [Alkaliphilus
           metalliredigens QYMF]
 gi|149948701|gb|ABR47229.1| PAS/PAC sensor signal transduction histidine kinase [Alkaliphilus
           metalliredigens QYMF]
          Length = 583

 Score =  300 bits (768), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 88/368 (23%), Positives = 171/368 (46%), Gaps = 19/368 (5%)

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK--PFTVFLEQNTPSVMNH 511
           L  +L++T DGI   N E   +  N++     GY  +    K       +          
Sbjct: 189 LKHVLKSTGDGIWEWNVESNQIYLNKSFLHTLGYQNDQRTTKAEDLIKLIHPEDRYGFKE 248

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRI--IIKKLPFSSC----YSLTMHDISEWK 565
            + +     + + ++      +K+ + +  RI   + K   +            +I+E K
Sbjct: 249 QVKKCCDNKI-EYIDYEIRVKSKKGEWIWFRIRGTVIKKDAAHGSSLKMVGMFINITERK 307

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI- 624
             +N+L+            ++DF + +SHE+RTPL  I+G  + ++          +Y  
Sbjct: 308 IIRNELN----EKMHFEKLRTDFFSNISHELRTPLNVILGSLQ-LQGLYIASENTSKYKK 362

Query: 625 EYAN---YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
           EY+     + ++   +L +VN+++DI+KI+SG  +++ E   ++  + E +  V+ Y   
Sbjct: 363 EYSKANKRMKQNSYRLLRLVNNIIDITKIDSGFYDINLENYDINMLIREIVLSVEDYIEN 422

Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
             + I      N   I  D   +++I LN+LSNAI FT +GG+I+++     N  + + V
Sbjct: 423 AGLQIEFKANTNQAIIACDPEKIERIMLNLLSNAIKFTEAGGKIVVTVKMVQN-RIFMSV 481

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
           RDTG+G+   ++    + F Q+ +    + EG+G+GL L + +++A+ GK  + S   +G
Sbjct: 482 RDTGIGIPQEKINSVFERFKQVGSYSHRKNEGSGIGLSLVRLLIEAHKGKVTVRSKLNEG 541

Query: 802 TLIEIIFP 809
           T   I  P
Sbjct: 542 TEFIIELP 549


>gi|146302442|ref|YP_001197033.1| multi-sensor hybrid histidine kinase [Flavobacterium johnsoniae
            UW101]
 gi|146156860|gb|ABQ07714.1| multi-sensor hybrid histidine kinase [Flavobacterium johnsoniae
            UW101]
          Length = 1350

 Score =  300 bits (768), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 90/381 (23%), Positives = 171/381 (44%), Gaps = 15/381 (3%)

Query: 438  VDTRINKRKMEIEVMQLCSILEATSDGIAI--INREGIILSTNRAVSKLFGYPVEDILRK 495
            ++   N+ K+     +   I       + +   +     +  N  +  L GY   + +  
Sbjct: 819  LERNRNESKIIESEEKFKLIANNIPGTVYLSKFDAFSTKIFLNDEIQNLTGYSKVEFIEN 878

Query: 496  PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR--IIIKKLPFSSC 553
              +     +          +I +L     L  I     K  + + +     + K      
Sbjct: 879  NLSFLSLIHHDDRDEVINNQIDNLQNGMPLHNIYRIKRKTGEYIWVEEFGDVIKKGDEIE 938

Query: 554  YSL-TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
            +      DI+  K+ ++ +   K++AE  +  KSDFLA +SHEIRTPL  IIGF+ ++  
Sbjct: 939  FVGGIYFDITNKKETEDAIKA-KQLAEAANKSKSDFLANMSHEIRTPLNGIIGFTHLLMK 997

Query: 613  QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
                        +Y   I++S + +L+I+ND+LD SKIE+GK+ L  +   + + + +  
Sbjct: 998  TEL----EEIQEKYMTTINQSAHSLLEIINDILDFSKIEAGKLELFIDLYDIKKVLGQVF 1053

Query: 673  SLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTT 730
             L+   +N+K + +  +  +++P+ I  D+  +KQI +N+LSNA+ FT  G  ++ +S  
Sbjct: 1054 DLIVFESNQKSLQLELNVDHDVPKYIWTDIVRIKQILINLLSNAVKFTNEGSIKLNVSVL 1113

Query: 731  HTSNEE---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
              +      +   V DTG+G+     +K  K F Q  +S   +  GTGLGL ++  ++  
Sbjct: 1114 SKTKNNFCTIRFSVIDTGIGIMEKNQKKIFKAFSQADSSTTRKFGGTGLGLTISNQLLAL 1173

Query: 788  NMGKFYIFSTPAKGTLIEIIF 808
               +  + ST  +G+      
Sbjct: 1174 MESRLQLESTIGEGSNFFFDL 1194



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/159 (13%), Positives = 55/159 (34%), Gaps = 12/159 (7%)

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
              I  +  +  + +        Q  ++++  +D I  ++ +G     N     + GY  
Sbjct: 340 IISIGQDVTEQILVQ-------DQYKNLIQTATDIIFEVDADGHFTFINEFAYSVLGYSE 392

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR----III 545
            +I+ K ++ F+ +N       +     +   +  +        K    L +     I  
Sbjct: 393 NEIVGKHYSNFIHENYSMSAVDFYENFENNGYKFPI-IELPIVKKNGLELWISQKIIIRK 451

Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
             L  +  ++    DI+E K  +N+     +  E  ++ 
Sbjct: 452 NDLGQTIGFAGIARDITEIKNAENEKKRRLEKIEAYNNS 490



 Score = 46.2 bits (108), Expect = 0.021,   Method: Composition-based stats.
 Identities = 20/141 (14%), Positives = 43/141 (30%), Gaps = 4/141 (2%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK-RQNTWY 144
            + +DA G+   I+E     +G    +++G    +     +        +  +     + 
Sbjct: 368 IFEVDADGHFTFINEFAYSVLGYSENEIVGKHYSNFIHENYSMSAVDFYENFENNGYKFP 427

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
                   +   L + I    +   +   +  GF G  I        +     KR  +K 
Sbjct: 428 IIELPIVKKN-GLELWISQKIIIRKNDLGQTIGFAG--IARDITEIKNAENEKKRRLEKI 484

Query: 205 SHLHEIKKGHSSVEKEKYDIF 225
              +   K  S+ +   YD  
Sbjct: 485 EAYNNSTKKLSTTDFSTYDNL 505


>gi|330843130|ref|XP_003293515.1| hypothetical protein DICPUDRAFT_42128 [Dictyostelium purpureum]
 gi|325076143|gb|EGC29955.1| hypothetical protein DICPUDRAFT_42128 [Dictyostelium purpureum]
          Length = 1374

 Score =  300 bits (768), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 84/373 (22%), Positives = 162/373 (43%), Gaps = 19/373 (5%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
             +++    ++ + +E + D + I +  G I   N A ++  G+   + L K F+  +  
Sbjct: 507 AEQLKDATRKMVTCIENSPDCVEIWDHSGHIQYLNLAFTETTGFARWEFLGKEFSSLI-- 564

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDI 561
              + +   +   L+          T             I      F     Y  T  D+
Sbjct: 565 -ENTEIIPSMWTTLTDKKTWNGFIKTRHLNNTVIYFDTSISPVLDQFQQILYYHCTKRDV 623

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           ++ K ++   +  +    ++S  +   ++ +SH+IRTP++ IIG ++++ +         
Sbjct: 624 TQKKIDEESKTLEQNKIIEKSRLR---ISMMSHDIRTPMSNIIGMADLLYDTPLSN---- 676

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
             + Y N I  S N +L+I+ND+LD+SKIE+GK+ + +E    +  VSE +  +      
Sbjct: 677 HQLHYLNIIKNSSNTLLNIINDILDMSKIEAGKLEIEYERFDFNSTVSEVVESMAQRVQA 736

Query: 682 KRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---- 736
           K + + +     IP+ ++     + QI  N+L N++ FT  G +I I    T   +    
Sbjct: 737 KGLELLSYIDPKIPQTLVGPSSRLNQILTNLLGNSLKFTDKG-EISIFCLLTDETDSEYV 795

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA-NMGKFYIF 795
           + + V+DTG+G+    L    K F Q   +   +  G+GLGL + K +V     G   + 
Sbjct: 796 IRVEVKDTGIGIKKEALPLLFKAFTQAEGTITRQYGGSGLGLAICKELVQLAFNGSISVE 855

Query: 796 STPAKGTLIEIIF 808
           S    G+    I 
Sbjct: 856 SHYGHGSTFTAIL 868



 Score = 42.7 bits (99), Expect = 0.25,   Method: Composition-based stats.
 Identities = 17/133 (12%), Positives = 42/133 (31%), Gaps = 8/133 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            W  D  G+++ ++    +T G   ++ +G     + +   I P   +   L  + TW G
Sbjct: 530 IW--DHSGHIQYLNLAFTETTGFARWEFLGKEFSSLIENTEIIP--SMWTTLTDKKTWNG 585

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
                 +  T +Y    ++  P+  + ++   +                        K  
Sbjct: 586 FIKTRHLNNTVIYFDTSIS--PVLDQFQQILYYH--CTKRDVTQKKIDEESKTLEQNKII 641

Query: 206 HLHEIKKGHSSVE 218
               ++    S +
Sbjct: 642 EKSRLRISMMSHD 654


>gi|254411044|ref|ZP_05024822.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196182399|gb|EDX77385.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 1004

 Score =  300 bits (768), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 109/826 (13%), Positives = 228/826 (27%), Gaps = 130/826 (15%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151
              +   ++   + +G    +++G    D                +    T         
Sbjct: 180 ELQVMYWNKTSEELLGYSKAQVLGKSDYDFLPYQQARLLRAKDRQILMGGTLVDIPEAPL 239

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
                    ++   +P+           G  I           A  +  ++ +  + E  
Sbjct: 240 NTPHRGERIVNAKKVPLLDETGTPQYLLG--IFEDITERKQAEAALRESERHYRCIVETA 297

Query: 212 KGHSSVEKEKYDIFSQQSPPP---HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
                V  E   I    S         +          +   +     + Y     +   
Sbjct: 298 SEGVWVFDENNQITFANSRMTQMLGYTITQMQGRSLFDFIDSESQALIQTYLDRRRQGIQ 357

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL----SHRNHPSLSAYFDEGENLTPE 324
                 F   + +          L N+       L       +         E E     
Sbjct: 358 ERYDFKFRRQDGSNLWAIISATPLFNDQGGFVGVLRMITDISDRKQAEEALQEREQFLSS 417

Query: 325 TVDKCPIPFFVYSHG------------NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
            ++       V                     NP++  L    +         L  +L  
Sbjct: 418 ILNGVENSISVVDVHQHQSEPDPSWEFRYVDVNPAYEQLIGIPAEQL--RNQSLGAILPP 475

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
            +           +     T ++                          +Q  +      
Sbjct: 476 DRAITITEHYTTCV--QTGTSLSYEECFSVQ----GQERWWITTLTPLRDQHGQIYRVVS 529

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
                   +  ++K      +L +ILE+T+D +++   +G +L  N+A  +L G   +  
Sbjct: 530 TSTNITQRKQAEQK----TARLTAILESTTDFVSMCEPDGTLLYINKAGRQLVGLEPDQQ 585

Query: 493 LRKPFTVFLEQNT--PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR----IIIK 546
           +           +    +    L  ++     +  +  T    ++   + +         
Sbjct: 586 ISHLRMWDFHPESVNQRLFAEALPTVIQD---KVWQGETSLVHQQGWEIPVSQVVMAHPG 642

Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS----------------------- 583
                  +S  + DIS+ KQ +  L  +++    ++                        
Sbjct: 643 ATGEVEVFSTIIRDISDRKQAEEALQKSEQELRVKNQDLQHTLDQLKKTQTQLIQQEKMV 702

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEV-------------IKNQRFGPLGNPRYIE----- 625
                +A ++HEI  P+  I G                 +  + +         E     
Sbjct: 703 SLGQMVAGIAHEINNPIGFIAGNITYTRQYGMELLQLLQLYAKHYPEPVAEIQAEIEAVD 762

Query: 626 ----------YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
                       N ++   N +  IV  L + S+++        +PV + + +   + ++
Sbjct: 763 LDFVRADFPKLLNSMEEGANRIRQIVLSLRNFSRLD----EAEIKPVDIHDGMESTLLVL 818

Query: 676 QLYA----NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF---TPSGGQIIIS 728
           Q       N   I +   +  N+P +      + Q+ LNIL NAI      P   +I IS
Sbjct: 819 QHRLKSTLNRPEIQVDKHY-GNLPLVECYASQLNQVFLNILGNAIDALDTHPEPRRITIS 877

Query: 729 TTHTSN--------------------EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
           T  +S                     E VI+R++D G G+     ++   PF    +   
Sbjct: 878 TAVSSQLPVVPLEESPDKEPQNSQPIERVIIRIKDNGPGIPEAIQKQIFDPFFTTKSIGT 937

Query: 769 IRGEGTGLGLPLAKAM-VDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
               GTGLGL +++++ VD + G+    S P +GT   I  P+   
Sbjct: 938 ----GTGLGLSISQSIVVDKHGGQLTCISQPGQGTEFVIELPIKQQ 979



 Score =  150 bits (379), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 38/367 (10%), Positives = 97/367 (26%), Gaps = 30/367 (8%)

Query: 236 MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN 295
           + +++ S        D     E        + S   +      +             ++ 
Sbjct: 72  ISDRIRSFDSIIHPHDRRRVKESVGQSIDNQHSYVLEYRIVRADGKIAWVYDKGQGTRDE 131

Query: 296 SKES----FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLF--YANPSFL 349
           +          L   +         E +      ++  P+  F+     L   Y N +  
Sbjct: 132 NGVVQWLDGVILDISDRKQTELQLRETQAFLNSVIENLPVGVFIKDAKELQVMYWNKTSE 191

Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
            L  Y     +  +       D         ++           +        +      
Sbjct: 192 ELLGYSKAQVLGKSD-----YDFLPYQQARLLRAKDRQILMGGTL-VDIPEAPLNTPHRG 245

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469
              +        ++        GI  +  + +  +  +         I+E  S+G+ + +
Sbjct: 246 ERIVNAKKVPLLDETGTPQYLLGIFEDITERKQAEAALRESERHYRCIVETASEGVWVFD 305

Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
               I   N  ++++ GY +  +  +    F++  + +++  YL         +      
Sbjct: 306 ENNQITFANSRMTQMLGYTITQMQGRSLFDFIDSESQALIQTYLDRRRQGIQER---YDF 362

Query: 530 LGSTKEEKLLSLRIIIKKL-PFSSCYSLTMH---DISEWKQEKNKLSHAKKIAEKESSHK 585
               ++   L   I    L      +   +    DIS+ KQ +  L             +
Sbjct: 363 KFRRQDGSNLWAIISATPLFNDQGGFVGVLRMITDISDRKQAEEAL-----------QER 411

Query: 586 SDFLARV 592
             FL+ +
Sbjct: 412 EQFLSSI 418



 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 44/391 (11%), Positives = 116/391 (29%), Gaps = 37/391 (9%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            W  D +  +   +  + + +G    +M G  L D       +    I   L R+     
Sbjct: 301 VWVFDENNQITFANSRMTQMLGYTITQMQGRSLFDFI---DSESQALIQTYLDRRRQGIQ 357

Query: 146 KTT---LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
           +         +G+NL+  I  +A P+++    F G     ++ +    +D +   + L +
Sbjct: 358 ERYDFKFRRQDGSNLWAII--SATPLFNDQGGFVG-----VLRMITDISDRKQAEEALQE 410

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPP--HLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
           +   L  I  G  +          Q  P P    R  +   +  +      + L+ +   
Sbjct: 411 REQFLSSILNGVENSISVVDVHQHQSEPDPSWEFRYVDVNPAYEQLIGIPAEQLRNQSLG 470

Query: 261 LLTSEESSLP---------------EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
            +   + ++                  E+  ++   +         L++   + +  +S 
Sbjct: 471 AILPPDRAITITEHYTTCVQTGTSLSYEECFSVQGQERWWITTLTPLRDQHGQIYRVVST 530

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364
             + +     ++        ++            G L Y N +   L   +    I    
Sbjct: 531 STNITQRKQAEQKTARLTAILESTTDFVSMCEPDGTLLYINKAGRQLVGLEPDQQISHLR 590

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
                     ++     + +     D+     ++ +H   W     + ++ +        
Sbjct: 591 MWD--FHPESVNQRLFAEALPTVIQDKVWQGETSLVHQQGWE----IPVSQVVMAHPGAT 644

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
            E    + I  +  D +  +  ++    +L 
Sbjct: 645 GEVEVFSTIIRDISDRKQAEEALQKSEQELR 675


>gi|206968213|ref|ZP_03229169.1| sensor histidine kinase ResE [Bacillus cereus AH1134]
 gi|229177984|ref|ZP_04305356.1| hypothetical protein bcere0005_13470 [Bacillus cereus 172560W]
 gi|206737133|gb|EDZ54280.1| sensor histidine kinase ResE [Bacillus cereus AH1134]
 gi|228605472|gb|EEK62921.1| hypothetical protein bcere0005_13470 [Bacillus cereus 172560W]
          Length = 591

 Score =  300 bits (768), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 81/371 (21%), Positives = 153/371 (41%), Gaps = 39/371 (10%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            ++ E  QL SIL + +DG+  +N+EG ++  N           E+       + L +  
Sbjct: 249 ALQQEKEQLASILSSMADGVITLNQEGEVVVINPPAEHFLQVWQEEK-----EIELSKKL 303

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
           PS +      ++  + +Q +E        +   + L   +            + D++E +
Sbjct: 304 PSELVELFHLVVESEQQQVVEINLQ----KGNYVVLMTPLYNQTKIRGAVAVLRDMTEER 359

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + +                + DF+A VSHE+RTP+  + G+SE I +            E
Sbjct: 360 RLE--------------KMRQDFIANVSHELRTPMVMLQGYSEAILDDIVQT--KEEIDE 403

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           +   I      +  +VN+LLD++++ESG + LH   V +   V +     Q  A +K + 
Sbjct: 404 FVQIIYDESVRLGKLVNELLDLARMESGHVELHIGEVDIHPFVEKIGRKFQGIAKDKEVE 463

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +   F N I     D   ++Q+  N++ NAI  T +GG + +     +N  +I  V+D+G
Sbjct: 464 LTVDFRNQIEEYAFDADRMEQVLTNLIDNAIRHTNAGGHVTLVIDTKNNG-LIFEVQDSG 522

Query: 746 VGMTNYELEKAMKPFGQIPNSQQI-------RGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
            G+   ++      F +   ++          G        +AK +V  + GK  + S  
Sbjct: 523 AGIPEEDIPFLFDRFYKADKARTRGKKGGTGLGL------AIAKNIVQGHDGKIAVSSVV 576

Query: 799 AKGTLIEIIFP 809
            +GT   +  P
Sbjct: 577 GEGTTFSVYLP 587


>gi|23016230|ref|ZP_00055988.1| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 566

 Score =  300 bits (768), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 92/548 (16%), Positives = 194/548 (35%), Gaps = 24/548 (4%)

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA-YFDEGENLTPETVD 327
           L       ++ L     +     L     E       R+  SL A    E      E  +
Sbjct: 34  LALLGAVASVVLAARCGRAEGAALDTLRAEMTALRKERDRLSLLADVVKESSERYREYSE 93

Query: 328 KCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
                F+         + + SF  +    S D +               SD        L
Sbjct: 94  AAADWFWESDADQRFTFFSSSFETVMNITSDDLLGKRSWDIVSERMEIDSDQWQAHIADL 153

Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
                         + ++     +  +      + ++    +   G   +         +
Sbjct: 154 TAQ----RPFRDFKYWLEDGAGRARWIKVNGLPRFDEDGVFIGYRGTGSDIT----AAVE 205

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
               +  L   +E +   I I +    I   N A  ++ GY +++++           TP
Sbjct: 206 NAHRMHMLNRAVEQSPVSIVITDLNADIQYVNSAFLRVTGYSMDEVIGHNPRFLKSDLTP 265

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDIS 562
             +   +   L++  +   E   +   K  +L      I+ +         Y     DI+
Sbjct: 266 PAVFEAMWAALTVGDKW--EGELVNRRKTGELYWEMASIQPISNIEGNVTNYLAIKSDIT 323

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E K    KL+   +   + +     F    SH++R PL  I  +   +  ++     +  
Sbjct: 324 EQKSAAAKLAELVEELRRSNEELEQFAYVASHDLRQPLRMISAYL-GLLERKLSASFDQD 382

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             ++  +       +  ++ DLL+ S+I  G++     PV L EAVS A+  +++   E 
Sbjct: 383 ARDFFGFAVDGARRLDRMIVDLLEYSRI--GRITTPMAPVPLGEAVSNALRYLEVAIAES 440

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS-NEEVILRV 741
           +  +     + +P I  D   + ++  N++ NA+ + P G +  I       + E ++ V
Sbjct: 441 KAQVLV--PDILPTISGDGGELVRLFQNLIGNALKYMPEGRRPRIEVFCRDGDGEWVVGV 498

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
           +D G+G+   +L++    F ++    + + EGTG+GL + + + + + G+ ++ S    G
Sbjct: 499 KDNGIGIAADDLKRVFGIFQRLVA--REQYEGTGIGLAVCRKIAEHHGGRIWVESECGLG 556

Query: 802 TLIEIIFP 809
           +   I FP
Sbjct: 557 STFLIAFP 564



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/252 (13%), Positives = 64/252 (25%), Gaps = 14/252 (5%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIG-MRLCDVSDILHIDPNNHIGDL--LKRQNTW 143
           W  DA       S      +   +  ++G      VS+ + ID +     +  L  Q  +
Sbjct: 100 WESDADQRFTFFSSSFETVMNITSDDLLGKRSWDIVSERMEIDSDQWQAHIADLTAQRPF 159

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                 W  +G      I +  LP +  +  F G+RG G       D             
Sbjct: 160 RDFK-YWLEDGAGRARWIKVNGLPRFDEDGVFIGYRGTG------SDITAAVENAHRMHM 212

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEKYPL 261
            +   E       +     DI    S    +     ++V      +   D         +
Sbjct: 213 LNRAVEQSPVSIVITDLNADIQYVNSAFLRVTGYSMDEVIGHNPRFLKSDLTPPAVFEAM 272

Query: 262 LTSE--ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
             +         +          Y +      + N       YL+ ++  +         
Sbjct: 273 WAALTVGDKWEGELVNRRKTGELYWEMASIQPISNIEGNVTNYLAIKSDITEQKSAAAKL 332

Query: 320 NLTPETVDKCPI 331
               E + +   
Sbjct: 333 AELVEELRRSNE 344


>gi|299143500|ref|ZP_07036580.1| sensory transduction histidine kinase [Peptoniphilus sp. oral taxon
           386 str. F0131]
 gi|298517985|gb|EFI41724.1| sensory transduction histidine kinase [Peptoniphilus sp. oral taxon
           386 str. F0131]
          Length = 593

 Score =  300 bits (768), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 85/360 (23%), Positives = 154/360 (42%), Gaps = 30/360 (8%)

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI-LRKPFTVFLEQNTPSV 508
           E  +L +I    ++G+  ++R G ++  N    ++       +  ++  T          
Sbjct: 260 EKSKLNTIFNYMAEGVIAVSRSGYLIHANPIAREILDLDENYLKTKQDLTKLNIFGINYS 319

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568
            N  L     L+++    KI     K+ +L +L              + + DI+      
Sbjct: 320 DNSSLEGESELEIKDKFFKIKYAPYKKGRLTNL-----------GLIVVLQDIT------ 362

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
                           + +F+A VSHE++TP+T I  +SE + + +  P        +  
Sbjct: 363 --------KEHTLDVMRKEFVANVSHELKTPITTIRSYSETLLDSKMEP---DEVKHFVK 411

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I+R    +  +V+DLL +S I+    N  +E +   + +S+ +  + +   EK   I  
Sbjct: 412 IINRENTRMGRLVSDLLQLSNIDYKTSNYVYEEIDTYDILSQTLEGLSVMIKEKNHNISL 471

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748
               +I  I AD  ++ QI +NI+SNAI +T  GG+I IS T      V + V D G+G+
Sbjct: 472 EIPMDIRNIYADRHALDQILMNIISNAIKYTDEGGKIKISATSNYFN-VNIIVEDNGIGI 530

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
              +L +  + F ++   +     GTGLGL +A+ +  +  G   I S   +GT I I  
Sbjct: 531 PESDLPRIFERFYRVEKGRSRAMGGTGLGLSIARELTLSMGGDIKIDSKFKEGTKISISL 590


>gi|229111063|ref|ZP_04240622.1| hypothetical protein bcere0018_33100 [Bacillus cereus Rock1-15]
 gi|228672426|gb|EEL27711.1| hypothetical protein bcere0018_33100 [Bacillus cereus Rock1-15]
          Length = 490

 Score =  300 bits (768), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 95/514 (18%), Positives = 194/514 (37%), Gaps = 39/514 (7%)

Query: 310 SLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
                      +     +  P     +   G + + NPS   +  Y S++ +E     S 
Sbjct: 2   RNHIQDRSLTEMYASLFEHNPDSIISLNLEGVILHINPSAERILGYTSLE-LEQKNITSI 60

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
           L       + +  + V+    +         + +I       L +         Q     
Sbjct: 61  L-------EAHISEQVLQNIKNTEADNQQEYILSIYHKNGFLLDVVTKLVPIFVQNRLTG 113

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
               ++P +   RI +  ++    +L +++ +    +   + EG  L  N      F + 
Sbjct: 114 VYAIMKPLEKSERI-ENMLKESEKRLRTLVNSMPAFVIFKDHEGRWLEANDYALSCFNFH 172

Query: 489 VEDILRKPFTVFLEQNTPSVMN----HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
                 K  +  ++ N            + E+     RQ L        +++  L L I 
Sbjct: 173 HVPYHGKKDSELIQYNEAYREAFLHCEEIDELAWQ-QRQILHGEEFIIHRDDFDLILSIS 231

Query: 545 IKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
              L           +   D++E K+ +  L  ++K+A           A ++HEIR PL
Sbjct: 232 KVPLYHPDGSRKGLIVMGRDVTELKETEKLLRKSEKLAVV-----GQLTAGIAHEIRNPL 286

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
           T++ GF  ++      P  +     Y + +    + +  I +  + +SK +     L  +
Sbjct: 287 TSLKGFLTLLL-----PEISEEQKWYIDVMLSEISQMESITSQFMAMSKPQ----VLSIQ 337

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720
             ++   + E ++ +   A    + I     + +  I  D   +KQ+ +NIL NAI   P
Sbjct: 338 TCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYVYDIQCDGNQLKQVFINILKNAIEAMP 397

Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
           +GG I I T    +  +++R+ D G G+    + +  +PF        ++ +GTGLGL +
Sbjct: 398 NGGNIFIQTKPLEDNFILIRIIDEGCGIPEDRISRLGEPFY------SLKEKGTGLGLMM 451

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
              +++ + G+ +I S   KGT+++I  PL  + 
Sbjct: 452 CYKIIEEHHGRLHISSELNKGTIVDIELPLSSSH 485


>gi|229128913|ref|ZP_04257889.1| hypothetical protein bcere0015_33580 [Bacillus cereus BDRD-Cer4]
 gi|228654618|gb|EEL10480.1| hypothetical protein bcere0015_33580 [Bacillus cereus BDRD-Cer4]
          Length = 490

 Score =  300 bits (768), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 97/514 (18%), Positives = 193/514 (37%), Gaps = 39/514 (7%)

Query: 310 SLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
                      +     +  P     +   G + + NPS   +  Y S++ +E     S 
Sbjct: 2   RNHIQDRSLTEMYASLFEHNPDSIISLNLEGVILHINPSAERILGYTSLE-LEQKNITSI 60

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
           L       + +  + V+    +         + +I       L +         Q     
Sbjct: 61  L-------EAHISEQVLQNIKNTEADNQQEYILSIYHKNGFLLDVVTKLVPIFVQNRLTG 113

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
               ++P +   RI    ++    +L +++ +    +   + EG  L  N      F + 
Sbjct: 114 VYAIMKPLEKSERIENI-LKESEKRLRTLVNSMPAFVIFKDHEGRWLEANDYALSCFNFH 172

Query: 489 VEDILRKPFTVFLEQNTPSVMN----HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
                 K  +  ++ N            + E+     RQ L        +++  L L I 
Sbjct: 173 HVPYHGKKDSELIQYNEAYREAFLHCEEIDELAWQ-QRQILHGEEFIIHRDDFDLILSIS 231

Query: 545 IKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
              L           +   D++E K+ +  L  ++K+A           A ++HEIR PL
Sbjct: 232 KVPLYHPDGSRKGLIVMGRDVTELKETEKLLRKSEKLAVV-----GQLTAGIAHEIRNPL 286

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
           T++ GF  ++      P  N     Y + +    + +  I +  + +SK +     L  +
Sbjct: 287 TSLKGFLTLLL-----PEINEEQKWYIDVMLSEISQMESITSQFMAMSKPQ----VLSIQ 337

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720
             ++   + E ++ +   A    + I     + +  I  D   +KQ+ +NIL NAI   P
Sbjct: 338 TCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYVYDIQCDGNQLKQVFINILKNAIEAMP 397

Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
           +GG I I T    +  +++R+ D G G+    + +  +PF        ++ +GTGLGL +
Sbjct: 398 NGGNIFIQTKPLEDNFILIRIIDEGCGIPEDRISRLGEPFY------SLKEKGTGLGLMM 451

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
              +++ + GK +I S   KGT+++I  PL  + 
Sbjct: 452 CYKIIEEHHGKLHISSELNKGTIVDIELPLSSSH 485


>gi|167571892|ref|ZP_02364766.1| two-component system sensor protein [Burkholderia oklahomensis
           C6786]
          Length = 925

 Score =  300 bits (768), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 132/671 (19%), Positives = 226/671 (33%), Gaps = 47/671 (7%)

Query: 175 FSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL 234
           F    G+ ++H  +      ALG                + ++ + +  I   QSP P  
Sbjct: 21  FDAHHGYAVLHTPQGAPAALALGI---PAPDRPASAFAPYLALLETQLLIGDGQSPLPDD 77

Query: 235 RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294
           R++    S    Y       + +         S+                 +     +  
Sbjct: 78  RVEGYSFSPDGTYLSLLWSREDQVPEAFLESHSA---SMVIGDAMHGIRYLRDASTIIPL 134

Query: 295 NSKESFEYLSHRNHP--------SLSAYFDEGENLTPETVDKCPIPFFVYS------HGN 340
            +     +L     P         +    D    L    V   P   F            
Sbjct: 135 RADRRIVWLPPHPDPLTGKSMIRIVQPAIDATGKLFAIYVRSLPTDMFYSDLNQASAGST 194

Query: 341 LFYANPSFLLLTKYKSVDDIEIAGGLSTL----LDAPKLSDNNAIKPVMLYRSDRTCIAA 396
               +    ++    S          S L    L           +  M   SD+     
Sbjct: 195 FTIVDRKGNIIIGSSSQSGANGGVTDSALSIRSLSDGIDGLVERYQDGMFVTSDQLPGTD 254

Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENM-PQNGIEPEDVDTR------INKRKMEI 449
              +H   W    +  M+             +     I     D +         +++  
Sbjct: 255 WVLVHAYSWKTIAAALMSMPRIALMTGLVVGIIGMLWIFAIQFDRKGLIPNYRRAQRLLE 314

Query: 450 EVMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
             +   +IL     G+ +++  +G +L  N A+ +L      + L           T   
Sbjct: 315 SEVLNRTILRTAPVGLGLLSAQDGSVLLQNNAMLELSARTGGEPLHIQLWKAYRNATARP 374

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568
            +   + +L  DL                 L   ++  +    +    T+ DIS  K+ +
Sbjct: 375 -DSKDSALLQHDLA------IERDESNPIYLQANVVAARYRGVNVQLCTLLDISLRKESE 427

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
            KL  A+  A++ +  KS FLA +SHEIRTPL AIIG  E+++          R  E   
Sbjct: 428 LKLEEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPLSM----RQSERLQ 483

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            ++   N +L I+ND+LD+SK+ESG+M L   P  +   + + +      A  K + + +
Sbjct: 484 VVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQDIVDAYAPLAESKGLELFS 543

Query: 689 SFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEE--VILRVRDT 744
           S    I      D   + QI  N++ NAI FT SG   I +    T      + + V DT
Sbjct: 544 SVGEGIANYYSGDPARIHQILSNLIGNAIKFTDSGHISIDVHRAKTGPGNSAIEIWVSDT 603

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G+    +      + Q   S   R  G+GLGLPL + +     G   I S P  GT +
Sbjct: 604 GIGIQPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLATIMGGSIEIDSLPEFGTTV 663

Query: 805 EIIFPLYDTSH 815
            ++ PL++   
Sbjct: 664 TVVLPLHEARQ 674


>gi|73538868|ref|YP_299235.1| PAS [Ralstonia eutropha JMP134]
 gi|72122205|gb|AAZ64391.1| PAS [Ralstonia eutropha JMP134]
          Length = 855

 Score =  300 bits (768), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 100/470 (21%), Positives = 182/470 (38%), Gaps = 21/470 (4%)

Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
           + I+      ++L   +  D    +   L RSD      ++    I +            
Sbjct: 2   EMIQRPTPFFSILARARAPDPAHARRPQLARSDGAMQFCASMRENIIYALIKFHLNHINA 61

Query: 418 FEKANQFPENMPQNGIEPEDV-------DTRINKRKMEIEVMQLCSILEATSDGIAIINR 470
               +      P      E+        D      +       L   LE + D I   + 
Sbjct: 62  RRSRSHTDAKRPLPMSTSEETHVPARLGDDVTAPTQAADHRDPL---LELSLDLICEASG 118

Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530
           +G     N A + + G+  +++L +PF  F+     +     +   +  +  +  +    
Sbjct: 119 DGYFTRVNPAFTSVLGWRADELLARPFLDFVAPEDRARTQELVRSHVKGNPIEDFQN--R 176

Query: 531 GSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
              K+  +  L      L        T  D+++ +  + ++  A++ AE  S  KS FLA
Sbjct: 177 YLCKDGAVRWLSWRAV-LRDDGTLYATARDVTQSRIAQLEIERARQEAEAASRAKSAFLA 235

Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650
            +SHEIRTP+  +IG  EV+              E    +  S   +L+I++D+LD SKI
Sbjct: 236 MISHEIRTPMNGVIGMIEVLTRTTLSA----DQREMVATVRESAAALLNIIDDILDFSKI 291

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIAL 709
           E+ KM +   P+S++  V    + + L A    + +       +P ++L D   ++Q+  
Sbjct: 292 EADKMRIECVPLSIEHTVETLCASLVLLAERNNVALYLDIDPGLPAQVLGDDLRLRQVLY 351

Query: 710 NILSNAIHFTP---SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
           N++ NAI F+     GG++ +       + V   + D G+GM    +    +PF Q   +
Sbjct: 352 NLVGNAIKFSGGALPGGRVYLRIAPAGGDVVRFEIEDNGIGMPPDAMATLFQPFVQAETT 411

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
              R  GTGLGL + + + +   G     S P  G    +  PL     P
Sbjct: 412 TTRRFGGTGLGLAICRRLTELMGGSIAAASQPGAGATFTVCLPLRAAEAP 461



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/188 (8%), Positives = 46/188 (24%), Gaps = 14/188 (7%)

Query: 39  SKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEI 98
           +K+  P   S E         +  + T   D  +  +      ++         GY   +
Sbjct: 70  AKRPLPMSTSEETHVPARLGDDVTAPTQAADHRDPLLE----LSLDLICEASGDGYFTRV 125

Query: 99  SEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG-KTTLWPIEGTNL 157
           +      +G  A +++     D            +     + N     +      +G   
Sbjct: 126 NPAFTSVLGWRADELLARPFLDFVAPEDRARTQELVRSHVKGNPIEDFQNRYLCKDGAVR 185

Query: 158 YVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSV 217
           +    L+   +   +        +            +   +R  ++       K    ++
Sbjct: 186 W----LSWRAVLRDDGTL-----YATARDVTQSRIAQLEIERARQEAEAASRAKSAFLAM 236

Query: 218 EKEKYDIF 225
              +    
Sbjct: 237 ISHEIRTP 244


>gi|163845790|ref|YP_001633834.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222523498|ref|YP_002567968.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
 gi|163667079|gb|ABY33445.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222447377|gb|ACM51643.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
          Length = 762

 Score =  300 bits (768), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 95/540 (17%), Positives = 192/540 (35%), Gaps = 51/540 (9%)

Query: 313 AYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKY-------KSVDDIEIAG 364
             +D       E +   P    V    G +   N     L          +S+  + +  
Sbjct: 227 QLYDLAPLAEQEVIAGLPDGLIVLDSRGLVAEINQHAPRLLGIQQGRWIGRSLTSLIVNS 286

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE--NSLAMTFIPFEKA- 421
                L     +      P      +    A   RL  +Q          +      +  
Sbjct: 287 PFERDLQRLLNTP--VTGPSRPVICENGTQAIEVRLRPLQSAAGITTGSLLLIRDVSERM 344

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI-----------------LEATSDG 464
               E                +    +     L +I                 ++   + 
Sbjct: 345 RAEQERARHIAALRLINSIARSANTAQETSTLLKTIAHIIVQEGHWERVSIGLIDNAQNI 404

Query: 465 IAIIN---------REGIILSTNRAVS-KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
              I+          + +I     +   +   +   +++        +    ++    L 
Sbjct: 405 HVTIDYTTAGYGRLHDQVISGVAASALIERIQHGRPELINLSELTVTDPLAETMQQEGLQ 464

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA 574
            +L   LR       +      +  S+   + +L            I++           
Sbjct: 465 SLLLAPLRHDQHAAGILGLASSETKSMTPTLTEL-----VIAIGELITDALIRIRLY--- 516

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
            +  ++    K+ FLA VSHE+RTPLT IIG++++++    G L  P   E  +Y+ ++ 
Sbjct: 517 -EEVQRADRLKTGFLATVSHELRTPLTTIIGYTDMLRRGVLGELS-PEVQETLHYMRQAS 574

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
             ++ +++D+L+ S++E+G++ +  EPV +   V   +  +Q    E ++ +  +   ++
Sbjct: 575 LNLMRLISDILEFSRMEAGQLIIDIEPVPVSVIVQNVVGQMQPQIREHQLHLMVNIPPDL 634

Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELE 754
           P I A+   ++Q+ +N+LSNAI F    G I I       E V + VRDTG+G+   + E
Sbjct: 635 PMIQANAGRLEQVLINLLSNAIKFNRPQGLIEIKAETR-GEWVRISVRDTGIGIAPADQE 693

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           +  + F ++         G GLGL + + ++    GK  + STP +G+      P+   S
Sbjct: 694 RIFEEFERVKQKNGHSVSGVGLGLAICRRLIQHMGGKIGVKSTPGEGSTFFCDLPVVPVS 753


>gi|148378339|ref|YP_001252880.1| two-component sensor histidine kinase [Clostridium botulinum A str.
           ATCC 3502]
 gi|148287823|emb|CAL81889.1| two-component sensor histidine kinase [Clostridium botulinum A str.
           ATCC 3502]
          Length = 615

 Score =  300 bits (768), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 91/397 (22%), Positives = 173/397 (43%), Gaps = 11/397 (2%)

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
           +  +   N+  N ++ +++  R  ++ +         ++  + D I +  R G I+  N 
Sbjct: 192 RQKEEEVNILANKLDQKEMQKRCMEQLLIKNENCYNLLIRNSKDAILVH-RYGKIIFANE 250

Query: 480 AVSKLFGYPVED-ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
            + ++ GY  E           + ++  + + + L  +        +         +EK 
Sbjct: 251 RLKQMLGYKKEYNFEDIDIKSLIPKDEYNTVKNKLENLY-YGSENVVNFQHNVINNKEKT 309

Query: 539 LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK------SDFLARV 592
           +                  +HD++   Q +      KK  E  +  +      ++FL+ +
Sbjct: 310 IQNTSTYVIYDGMPTIFSILHDVTSKIQVEKLEQDVKKNIELLNESREYNKLITEFLSNI 369

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHE++TPL  I    + + +     +   +  +Y   I ++   ++ ++N+LLD +K++S
Sbjct: 370 SHELKTPLNVIFTAVQ-LLDFYEKDVDYEKQDKYLKLIKQNCYRLMKLINNLLDTTKLDS 428

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712
           G + L+    ++   + E    V  YA  K I I          I  D   +++I LN+L
Sbjct: 429 GYLRLNLVNYNIVSLIEEITLSVTSYAESKGINIIFDTEMEERVIAVDTDKIERIILNLL 488

Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           SNAI FT  GG I ++   +    V + ++DTGVG+ + +LE   + F QI  + +   E
Sbjct: 489 SNAIKFTNPGGNIFVNIKDSEEN-VYVHIKDTGVGIPSDKLESIFERFFQIDKTLKKNKE 547

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GTG+GL L K+ V+ + GK  I S   KGT   I  P
Sbjct: 548 GTGIGLHLVKSFVEMHNGKVTINSELGKGTEFIIKLP 584


>gi|115379035|ref|ZP_01466163.1| hybrid sensor [Stigmatella aurantiaca DW4/3-1]
 gi|115363954|gb|EAU63061.1| hybrid sensor [Stigmatella aurantiaca DW4/3-1]
          Length = 616

 Score =  300 bits (768), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 104/641 (16%), Positives = 200/641 (31%), Gaps = 59/641 (9%)

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
           D+      E      +V      I    +    +     V    E    +          
Sbjct: 2   DQWALRFFESSTELLAVLHPDGRILQANAAWRGV-----VGWPPEALKAEGYRSFVHPED 56

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF----EYLSHRNHPSLSAYFD 316
           L   +   L         NL+   +      +  +          +L     P +   F 
Sbjct: 57  LGAMDAQLLALGGGEGRANLSCRWRCHDGAWVSLSWSVVSSGEDGWLFCTVRPPVPPAFT 116

Query: 317 EGENLTPETVDKCPIPF--FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST--LLDA 372
                   + D  P            + YAN  F  +   ++V+ +   G LS   L+  
Sbjct: 117 PEARSWSMS-DSLPFGLYLMETRADRILYANHRFCQMAGVEAVEALIRKGALSHSQLIHH 175

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
                N         R     +A   R   +    E+   +  +    A    +      
Sbjct: 176 HLSPQNAKAFFHSEARQGTPPLALEDREVAL----ESGRLLRRLATPMATADGKMSYILY 231

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE-D 491
           +  +  + R  +  +    +    ++E   DG+ +  R    +  N ++    GY  E +
Sbjct: 232 LFEDVTERRRTENALLSSELNFHKLIEGMPDGVFVH-RNRRFIYVNNSLRMALGYEHESE 290

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP-- 549
           ++ K     +  +   ++   +  I +      L+       ++            +   
Sbjct: 291 LIGKSIWSIVHPDDLGLVRERVHTIDNRREIVPLQ-EIRYLRRDGSWYDAESTGVPVEFN 349

Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                 +   DI+E K+ + +L    ++A   +       A V HEI  PL+ +I    +
Sbjct: 350 GEEASVVIARDITERKRMQAQLLQTDRMALVGT-----LAAGVGHEINNPLSYVIANLNL 404

Query: 610 IKNQRFGP-----------------LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
                  P                        E         N V +IV DL   S+ ++
Sbjct: 405 ALESLRLPTRECECSLEATGAPGYAASLRELEELLQEAQEGANRVRNIVRDLKSFSRQDA 464

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712
            +       VS+ E++  +I +  +     R  +   +   +P + AD   + Q+ LN+L
Sbjct: 465 ER----RTEVSVQESLDFSIKMASVEL-RHRAHLIRKYEP-VPPVYADTSRLGQVFLNLL 518

Query: 713 SNAIHFTPSGG----QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
            NA    P G     QI +        +V + V DTG G++    ++   PF        
Sbjct: 519 MNAAQAIPEGSNARNQITVWVRPGPPGQVAVDVSDTGAGISPEVQDRIFDPFFTTKP--- 575

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             G GTGLGL +   ++ +  G+  + S   KGT   ++ P
Sbjct: 576 -VGSGTGLGLSICHGIIRSLGGEISVSSELGKGTTFTVLLP 615



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/383 (8%), Positives = 85/383 (22%), Gaps = 24/383 (6%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150
             G + + +      +G     +             +   +     L         +  W
Sbjct: 21  PDGRILQANAAWRGVVGWPPEALKAEGYRSFVHPEDLGAMDAQLLALGGGEGRANLSCRW 80

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH---- 206
                +        ++     +        F  V                          
Sbjct: 81  RC--HDGAWVSLSWSVVSSGEDGWL-----FCTVRPPVPPAFTPEARSWSMSDSLPFGLY 133

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
           L E +         ++   +       L  K  +S     + H         +     + 
Sbjct: 134 LMETRADRILYANHRFCQMAGVEAVEALIRKGALSHSQLIHHHLSPQNAKAFFHSEARQG 193

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL----SHRNHPSLSAYFDEGENLT 322
           +     ED      +    ++    +     +    L                   E   
Sbjct: 194 TPPLALEDREVALESGRLLRRLATPMATADGKMSYILYLFEDVTERRRTENALLSSELNF 253

Query: 323 PETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
            + ++  P   FV+ +    Y N S  +   Y+   ++      S +           + 
Sbjct: 254 HKLIEGMPDGVFVHRNRRFIYVNNSLRMALGYEHESELIGKSIWSIVHPDDLGLVRERVH 313

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
            +   R     +     L  I++ R +             +F        I  +  + + 
Sbjct: 314 TIDNRR---EIVP----LQEIRYLRRDGSWYDAESTGVPVEFNGEEASVVIARDITERKR 366

Query: 443 NKRKMEIEVMQLCSILEATSDGI 465
            + ++        +++   + G+
Sbjct: 367 MQAQLLQTDRM--ALVGTLAAGV 387


>gi|326628479|gb|EGE34822.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 948

 Score =  300 bits (768), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 98/426 (23%), Positives = 172/426 (40%), Gaps = 35/426 (8%)

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
           +     L  I+      L +  I                 E        +  +   E  Q
Sbjct: 303 VPVDLVLERIR-----ILILNAILLNVLVGAGLFTLARMYERRIFIPAESDAQRLEEHEQ 357

Query: 454 L-CSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
               I+ +   GI I+   +G+ + +N            +  ++                
Sbjct: 358 FNRKIVASAPVGICILRTIDGVNILSNELAHTYLNMLTHEDRQR---------------- 401

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571
            LT+I+       ++      T     L +  +  +    +     + D+S   + +  L
Sbjct: 402 -LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSTRVKMEESL 456

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
               + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R       ++
Sbjct: 457 QEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR---LVTAMN 512

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
            S +L+L I++D+LD SKIES ++ +     S  E ++   +        K++ +     
Sbjct: 513 NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNYITANYLPLVVRKQLGLYCFIE 572

Query: 692 NNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
            ++P  +  D   ++Q+  N+LSNAI FT  G  I++       + + +RVRDTGVG+  
Sbjct: 573 PDVPVSLNGDPMRLQQVISNLLSNAIKFTDIG-CIVLHVRC-DGDYLSIRVRDTGVGIPA 630

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+   +  PL
Sbjct: 631 KEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTLRIPL 690

Query: 811 YDTSHP 816
           Y   +P
Sbjct: 691 YGAQYP 696


>gi|256830417|ref|YP_003159145.1| nitrogen-specific signal transduction histidine kinase NtrB
           [Desulfomicrobium baculatum DSM 4028]
 gi|256579593|gb|ACU90729.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfomicrobium baculatum DSM 4028]
          Length = 833

 Score =  300 bits (768), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 112/765 (14%), Positives = 237/765 (30%), Gaps = 73/765 (9%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG-KTTLW 150
            G   ++++      G    +++ +   +++  +  D      D+L+R   +   +T + 
Sbjct: 92  DGTYADVNKAFLSRWGLSREEVLSLSAAELAAGVE-DERQRFRDMLERDGRFSNMETQMV 150

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
             +G   ++    A +    +    S               +     KR  +KF      
Sbjct: 151 RPDGNVRHLLFSSAMVSAGGQASILSTAV------DVTSLKEAEKDIKRWREKFDLTTAA 204

Query: 211 KKGHSSVEKEKYDIFSQQSP-------PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
            +        + D+ +            P     N        +    D         L+
Sbjct: 205 ARLTFYEYDVENDVLTWSGSMLDVLGYDPEAMKGNLSVWTELLHPEDADRAIALFEEALS 264

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH----RNHPSLSAYFDEGE 319
            ++  +  +      +       +Y              L                 + E
Sbjct: 265 QQKRYV-IEYRLRRKDGTYADVFEYGRMFARTQDAPRRVLGIIQDVSEAKRTERALLQSE 323

Query: 320 NLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
               +  +  PI  F  S  G    ANP+   +  Y+  +D+  + G       P  S  
Sbjct: 324 EKYRDIFNNAPIGIFRTSFTGRFLEANPTLAHMLGYRDRNDLLASVGNLETDLYPYPSTR 383

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
             +   +L                 + +     A+      + ++       +G   +  
Sbjct: 384 QELIESLLVSPQGVRRDIEF----KRKDGAPFYAV-INASLQFDESGRPAYLDGTIEDIT 438

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILRKPF 497
             +  +  +     +  SI   + D I +   +   I   N A   LFG+  E++L K  
Sbjct: 439 IRKAAEDMLRQSEEKFASIFRLSPDAIVLFEMDTQRIQDVNDAFVALFGFSREEVLGKTS 498

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT 557
                  +P++ +     +    + +  E        EE L  L   +  +   S     
Sbjct: 499 LELGLYQSPALRDRLYALMNEHQIIRDFEFAAYRKDGEEILCLLSCQVIGINGRSLVFAV 558

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI---KNQR 614
           + D+ E K+ +  +   +K+            A ++HEI  PL  I+   + I    +  
Sbjct: 559 LRDLREMKRMQQFMIQTEKM-----QSLGGLAAGMAHEINNPLGIIVQGVQNIVRRLDPY 613

Query: 615 FGPLGNPRYI------------------EYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
            GP                          Y   I  +G     IV  +L  S+    +  
Sbjct: 614 LGPNIEAAKRYELDLHRLSMFLEERNIFRYLQGIRDAGERAAAIVASMLSFSR----RSE 669

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEK------RILIRTSFANNIPRILADLRSVKQIALN 710
             F    ++   S+A+ L     + K      R+ I   +  ++P +      ++Q+ LN
Sbjct: 670 RTFSSNDVNAIASKALELAGKDFDLKKHYDFRRLNIVREYDPDLPLVPCVGTEIEQVLLN 729

Query: 711 ILSNA----IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
           ++ NA    +        + + T     +  ++ V D G G+   +L +  +PF      
Sbjct: 730 LVRNAAQAMVRAGTENPTLTLRTR-KMRDWAVIEVEDNGPGIPRKDLSRIFEPFFTTKK- 787

Query: 767 QQIRGEGTGLGLPLAKAMV-DANMGKFYIFSTPAKGTLIEIIFPL 810
               GEGTGLGL ++  ++ + + G     +   +G+   +  PL
Sbjct: 788 ---VGEGTGLGLSVSYFIITNNHHGHLTATTCEGRGSKFIVSLPL 829



 Score = 99.3 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 48/395 (12%), Positives = 104/395 (26%), Gaps = 19/395 (4%)

Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254
              +  ++KF  + +      +  +                  ++   L+   A     +
Sbjct: 66  REKREFEEKFQAIFDNSPYSIAFNRLDGTYADVNKAFLSRWGLSREEVLSLSAAELAAGV 125

Query: 255 KTEKYPLLTSEESS-LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
           + E+       E        +   +  +   +   F +   ++      LS     +   
Sbjct: 126 EDERQRFRDMLERDGRFSNMETQMVRPDGNVRHLLFSSAMVSAGGQASILSTAVDVTSLK 185

Query: 314 YFDEGENLTPETVDKCPIP----FFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLST 368
             ++      E  D         F+ Y   N +   + S L +  Y            + 
Sbjct: 186 EAEKDIKRWREKFDLTTAAARLTFYEYDVENDVLTWSGSMLDVLGYDPEAMKGNLSVWTE 245

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
           LL         A+    L +  R  I        ++        +       A       
Sbjct: 246 LLHPEDADRAIALFEEALSQQKRYVIEY-----RLRRKDGTYADVFEYGRMFARTQDAPR 300

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
              GI  +  + +  +R +     +   I      GI   +  G  L  N  ++ + GY 
Sbjct: 301 RVLGIIQDVSEAKRTERALLQSEEKYRDIFNNAPIGIFRTSFTGRFLEANPTLAHMLGYR 360

Query: 489 VEDILRKPFTVFLEQ--NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
             + L              PS     +  +L     Q + +      K+       I   
Sbjct: 361 DRNDLLASVGNLETDLYPYPSTRQELIESLLVS--PQGVRRDIEFKRKDGAPFYAVINAS 418

Query: 547 KLPFSSCYSL----TMHDISEWKQEKNKLSHAKKI 577
                S        T+ DI+  K  ++ L  +++ 
Sbjct: 419 LQFDESGRPAYLDGTIEDITIRKAAEDMLRQSEEK 453



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/176 (10%), Positives = 50/176 (28%), Gaps = 7/176 (3%)

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470
           L +        N       +     E ++    ++       +  +I + +   IA    
Sbjct: 34  LIVRTRLRSTRNALDTRTRELLSAHEKIEVLSREK--REFEEKFQAIFDNSPYSIAFNRL 91

Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLE--QNTPSVMNHYLTEILSLDLRQTLEKI 528
           +G     N+A    +G   E++L           ++        L           +E  
Sbjct: 92  DGTYADVNKAFLSRWGLSREEVLSLSAAELAAGVEDERQRFRDMLER---DGRFSNMETQ 148

Query: 529 TLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
            +      + L     +      +    T  D++  K+ +  +   ++  +  ++ 
Sbjct: 149 MVRPDGNVRHLLFSSAMVSAGGQASILSTAVDVTSLKEAEKDIKRWREKFDLTTAA 204



 Score = 44.6 bits (104), Expect = 0.068,   Method: Composition-based stats.
 Identities = 15/152 (9%), Positives = 42/152 (27%), Gaps = 7/152 (4%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH---IGDLLKRQNT 142
            +     G   E +  L   +G      +   + ++   L+  P+     I  LL     
Sbjct: 337 IFRTSFTGRFLEANPTLAHMLGYRDRNDLLASVGNLETDLYPYPSTRQELIESLLVSPQG 396

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
                     +G   Y    + A   +  +   +   G   +    +      + ++ ++
Sbjct: 397 VRRDIEFKRKDGAPFYA--VINASLQFDESGRPAYLDG--TIEDITIRKAAEDMLRQSEE 452

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL 234
           KF+ +  +      + +         +     
Sbjct: 453 KFASIFRLSPDAIVLFEMDTQRIQDVNDAFVA 484


>gi|75909212|ref|YP_323508.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
 gi|75702937|gb|ABA22613.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
          Length = 498

 Score =  300 bits (768), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 83/378 (21%), Positives = 159/378 (42%), Gaps = 13/378 (3%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
              +R +     +L ++L + SD +   +  G +   N A  ++ G+   D +    +  
Sbjct: 123 HRLERDIRENRDRLATLLNSISDAVIATDEFGNVTFMNPAAEEITGWHQADAIGHEVSQI 182

Query: 501 LEQNTP---SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF----SSC 553
                    +V+ + +T++L       L++ T   TK+ + + +      +       + 
Sbjct: 183 FNIIDEVTENVLENPVTKVLREQKVVYLDEYTSLITKDGRRVPIGDSASPIMGLPNKING 242

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
             +   D+SE +Q +  L  A +   + ++ KS F++ VSHE R PL+ I    E +   
Sbjct: 243 VVIVFWDLSERRQTEL-LEQALQKERELNNLKSLFISTVSHEFRNPLSVIQTAIE-LIEL 300

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
               L   +   Y   I  +   +  ++ D+L + K ++ K++ +   ++L     E I 
Sbjct: 301 HGQNLTETKKNTYIKRIKGAVQSMKLLMEDVLFMGKSDAAKLDCNPVLLNLKGFCQELIE 360

Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
                       I  + ++       D R +  I +N+LSNA+ ++P    I    T   
Sbjct: 361 EF-TTVEISGHEIIFTCSDETTNAFMDERLLHYIFVNLLSNAVKYSPQNETIRFDLTFDQ 419

Query: 734 NEEV-ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
            + V I R++D G+G+   +     + F +  NSQ    +GTGLGL + K  V+A+ G+ 
Sbjct: 420 TKGVAIFRIQDEGIGIPVADQTHLFESFYRASNSQS--IQGTGLGLVIVKRCVEAHKGEI 477

Query: 793 YIFSTPAKGTLIEIIFPL 810
              S    GT   I  PL
Sbjct: 478 AFNSQEGVGTTFTITLPL 495



 Score = 41.6 bits (96), Expect = 0.55,   Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 37/117 (31%), Gaps = 6/117 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH----IGDLLKRQNTWY 144
            D  G +  ++    +  G +    IG  +  + +I+     N     +  +L+ Q   Y
Sbjct: 150 TDEFGNVTFMNPAAEEITGWHQADAIGHEVSQIFNIIDEVTENVLENPVTKVLREQKVVY 209

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
                  I      VPI  +A PI     + +G     +            L + L 
Sbjct: 210 LDEYTSLITKDGRRVPIGDSASPIMGLPNKINGV--VIVFWDLSERRQTELLEQALQ 264


>gi|222528132|ref|YP_002572014.1| PAS/PAC sensor signal transduction histidine kinase
           [Caldicellulosiruptor bescii DSM 6725]
 gi|312621185|ref|YP_004022798.1| multi-sensor signal transduction histidine kinase
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|222454979|gb|ACM59241.1| PAS/PAC sensor signal transduction histidine kinase
           [Caldicellulosiruptor bescii DSM 6725]
 gi|312201652|gb|ADQ44979.1| multi-sensor signal transduction histidine kinase
           [Caldicellulosiruptor kronotskyensis 2002]
          Length = 571

 Score =  300 bits (768), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 80/376 (21%), Positives = 156/376 (41%), Gaps = 59/376 (15%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           ++E E  +L  IL+  SDG+  IN    I+  N +  +                   ++ 
Sbjct: 240 ELEFEKQKLERILQNMSDGVLAINSRNEIIHINESAKRFL-----------------KDD 282

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-CYSLTMHDISEW 564
                  +    S  + Q +         +   L + I      F S      +HDI+E 
Sbjct: 283 IHGFLDKIQAQKSSVVSQPIIYEV-----DGYTLEVSIAFFVDSFQSTGMVFILHDITEQ 337

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY- 623
            +                  +  F+A VSHE+RTP+T I  +SE + +     + +    
Sbjct: 338 AKL--------------DRMRKQFVADVSHELRTPITTIKTYSETLLD-----VDDESVK 378

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            E+   I +  + +  +++DLL +S+++SG+  L  E V++ E V      ++++AN+K 
Sbjct: 379 REFLTVIIKECDRMTRLISDLLYLSRLDSGENILRIEEVNISELVRFVCEKMRIHANKKH 438

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
             +  +   +I  I AD   ++Q+ +N+++NAI +   GG+I +      N  + L V D
Sbjct: 439 QSLLCNVQEDII-IDADRDRLEQVLINLINNAITYVQDGGRIEVCLKKE-NGNIELTVED 496

Query: 744 TGVGMTNYELEKAMKPFGQIPNS-------QQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
            G G+   +L +  + F ++  +         +          +A  +V A+ G+  + S
Sbjct: 497 NGPGIPKEDLPRIFERFYRVDKARSRSLGGSGLGLS-------IADEIVKAHGGRVLVES 549

Query: 797 TPAKGTLIEIIFPLYD 812
               GT   ++ PL +
Sbjct: 550 EEGVGTKFTVVLPLKE 565


>gi|220907214|ref|YP_002482525.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219863825|gb|ACL44164.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 1419

 Score =  300 bits (768), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 123/748 (16%), Positives = 248/748 (33%), Gaps = 55/748 (7%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL-HIDPNNHIGDLLKRQNTWYGKT 147
             D  G ++    +  +  G  A + IG  +  +            I   L+    ++G+ 
Sbjct: 556  TDLQGNIQRWLGKAEQIFGYTAPEAIGRPVNFLHHPDIKARMTADIIQALQTTGEFWGEI 615

Query: 148  TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK---- 203
                 +G+   V I+  A  ++ +  +       GI           A    L ++    
Sbjct: 616  PCIRKDGSG--VLIETTAKTVHDKAGQPIFL--IGINKDITERKQAEAERAELIRQQVQE 671

Query: 204  FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
             +   E +              +  S   +      V+ L   Y      +         
Sbjct: 672  QTARLEAEADLRRSSFLVEVSTTLSSSLDYAETLQSVAWLAVPYFADWCAVDLLNDDGTI 731

Query: 264  SEESSLPEQEDFHTINLNQYTKKQ-------YFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
            S  +      +   +      +             +    K            + +    
Sbjct: 732  SRVAVAHPDPEKVKLGWELIARFPKHIEDGYGIAEVIKTGKSQLAIEITDAQLTAAVPHP 791

Query: 317  EGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYK--SVDDIEIAGGLSTLLDAPK 374
            E  ++      +  I   +++ G +   + SF++   ++  S  D+ +A  L+       
Sbjct: 792  EYRDILRGLGLRSSITAPLHNRGRVL-GSISFVISESHRQYSSADLRLAEELARRAAIAI 850

Query: 375  LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
             +           ++       +ARL  +      SL    +      Q    +      
Sbjct: 851  DNARLYHMAQQAQQAAEIAADRTARLQRVTAALSESLTPAQVAEVIVEQSMAVLQAAAAL 910

Query: 435  PEDVDTRINKRKMEIEVMQLCSILEA-----------TSDGIAIINREGIILSTNRAVSK 483
               V +   + ++   +     ++++            ++ I    R G  +        
Sbjct: 911  VVLVSSDRTELEIVKSIGYAADLVDSWSRFSINTDVPLAEAI----RTGEPVWV----ED 962

Query: 484  LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
            L           P     +  +   +   +       L  + ++    S  + + +    
Sbjct: 963  LLARIARYPHLAPIYRRYDFQSWIALPLVVESKSVGGLLLSFQEFKQLSQADREFILALT 1022

Query: 544  IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
                     C    +       Q       A+  AE+ +  K +FLA +SHE+R+PL  I
Sbjct: 1023 R-------QCAQAIVR-----AQLYEAERQARAEAEQANRVKDEFLAVLSHELRSPLNPI 1070

Query: 604  IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
            +G+++++++Q F P    +  +    I+R+  L   ++ DLLD+S+I  GKM L+   V+
Sbjct: 1071 LGWTKLLQSQPFSP---DKAAKALATIERNVKLQAQLIEDLLDVSRILQGKMVLNVTSVN 1127

Query: 664  LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
            L   +  A+  V+L A  K I + T     I  IL D   ++QI  N+L+N + FTP GG
Sbjct: 1128 LVSVIEAALETVRLSAETKAIQLETLMEPEIDPILGDPARLQQIVWNLLTNGVKFTPQGG 1187

Query: 724  QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
            ++ +           L+V+DTG G+    L      F Q   +   +  G GLGL + + 
Sbjct: 1188 RVTVRLQRVDT-FAQLQVQDTGKGINAAFLPHVFDYFRQEDGTTTRKFGGLGLGLAIVRH 1246

Query: 784  MVDANMGKFYIFS-TPAKGTLIEIIFPL 810
            + + + G     S     G    I  PL
Sbjct: 1247 LTEQHGGTVAADSPGEGLGATFTIRLPL 1274



 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 57/561 (10%), Positives = 162/561 (28%), Gaps = 53/561 (9%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-------DLLKRQNT 142
           DA G LK  ++      G  A  +   +  +  D+   D  + +          L+ +  
Sbjct: 162 DADGQLKLFNKAARSFHGLVAQPLPPQQWAEQYDLYLPDGKSPMAPEDIPLYRALQGEQV 221

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
              +  + P  G   ++    +   IY+ + +  G     ++H         A  +  + 
Sbjct: 222 VEVEMMIRPKPGQARHLL--ASGQAIYNLSGKKQGA--VVVMHDITERKHTEAALRESEA 277

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPP-HLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
           + S + +       +   +  I +  +     LR+ +       Y      +   +  P 
Sbjct: 278 RLSSIFQTIPDGIIILNPQGQIITANAAAEKILRLTSSDLRARGYNDPAWAITTVDGQPF 337

Query: 262 LTSEESSLPE----------QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS----HRN 307
              E   +            +      +  +         L +   +    ++       
Sbjct: 338 PEEELPFVQVIRTGKAVERVEHAIAHPDGTKIILSINASPLLDAHGQIVHVIAAISDITE 397

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
                      E      ++       +  + GN+F  N S   +    +   +  +   
Sbjct: 398 RKRAEVALQASEERYRSVIETAAEGIVLQTADGNIFTCNASAERILGLTAAQMMGRSSLD 457

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK-ANQFP 425
                  +       +      + RT    +     I+    +   ++            
Sbjct: 458 PRWCAIYEDGSPFPGELHPAMVTLRTGDPQTNVTMGIRKPEGSLTWISINTRPLFQPDSA 517

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
             +       +  +++  + ++ I      + L+   D I + + +G I        ++F
Sbjct: 518 TPVAVVSTFFDITESKQAEAELLIS----DTALQQMPDAILLTDLQGNIQRWLGKAEQIF 573

Query: 486 GYPVEDILRKPFTVFLEQN-TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
           GY   + + +P       +    +    +  + +               K+   + +   
Sbjct: 574 GYTAPEAIGRPVNFLHHPDIKARMTADIIQALQTTGE---FWGEIPCIRKDGSGVLIETT 630

Query: 545 IKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR--- 597
            K +   +           DI+E KQ + + +   +   +E + + +  A    ++R   
Sbjct: 631 AKTVHDKAGQPIFLIGINKDITERKQAEAERAELIRQQVQEQTARLEAEA----DLRRSS 686

Query: 598 ------TPLTAIIGFSEVIKN 612
                 T L++ + ++E +++
Sbjct: 687 FLVEVSTTLSSSLDYAETLQS 707



 Score =  142 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 64/522 (12%), Positives = 156/522 (29%), Gaps = 41/522 (7%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK 146
           + ++ +G     ++   + +G      +   L  +     +D ++ +     R  T   +
Sbjct: 42  FALNLNGSCTYANQSAERLLGAKRADWLHQPLWQI---FDVDSSSQLYQQCDRVLT---E 95

Query: 147 TTLWPIEG--TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
                 E    +L     +  +P  S    F+ F+    +          ALGK  D   
Sbjct: 96  LICVEFEEFYPSLNHWFAVRLIP--SPKGCFAYFQDINQLKQIEA-----ALGKEQDFLN 148

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
             L +++ G  + + +       ++      +  +     ++    D  L   K P+   
Sbjct: 149 ILLDQVQAGIVACDADGQLKLFNKAARSFHGLVAQPLPPQQWAEQYDLYLPDGKSPMAPE 208

Query: 265 ---------EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL----SHRNHPSL 311
                     E  +  +                   + N S +    +            
Sbjct: 209 DIPLYRALQGEQVVEVEMMIRPKPGQARHLLASGQAIYNLSGKKQGAVVVMHDITERKHT 268

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
            A   E E          P    + +  G +  AN +   + +  S D +   G      
Sbjct: 269 EAALRESEARLSSIFQTIPDGIIILNPQGQIITANAAAEKILRLTSSD-LRARGYNDPAW 327

Query: 371 DAPKLSDNN-AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
               +       + +   +  RT  A     H I       + ++       +   + + 
Sbjct: 328 AITTVDGQPFPEEELPFVQVIRTGKAVERVEHAIAHPDGTKIILSINASPLLDAHGQIVH 387

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
                 +  + +  +  ++    +  S++E  ++GI +   +G I + N +  ++ G   
Sbjct: 388 VIAAISDITERKRAEVALQASEERYRSVIETAAEGIVLQTADGNIFTCNASAERILGLTA 447

Query: 490 EDILRK----PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG-STKEEKLLSLRII 544
             ++ +    P    + ++           +++L        +T+G    E  L  + I 
Sbjct: 448 AQMMGRSSLDPRWCAIYEDGSPFPGELHPAMVTLRTGDPQTNVTMGIRKPEGSLTWISIN 507

Query: 545 IKKLPFSS-----CYSLTMHDISEWKQEKNKLSHAKKIAEKE 581
            + L             T  DI+E KQ + +L  +    ++ 
Sbjct: 508 TRPLFQPDSATPVAVVSTFFDITESKQAEAELLISDTALQQM 549



 Score = 65.4 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 20/129 (15%), Positives = 45/129 (34%), Gaps = 7/129 (5%)

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
             +  +IL+  ++    +N  G     N++  +L G    D L +P     + ++ S + 
Sbjct: 27  EEEFSTILDHIAEAFFALNLNGSCTYANQSAERLLGAKRADWLHQPLWQIFDVDSSSQLY 86

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570
                +L+  +    E+            ++R+I               DI++ KQ +  
Sbjct: 87  QQCDRVLTELICVEFEEFYPSLN---HWFAVRLIPSP----KGCFAYFQDINQLKQIEAA 139

Query: 571 LSHAKKIAE 579
           L   +    
Sbjct: 140 LGKEQDFLN 148


>gi|260598667|ref|YP_003211238.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Cronobacter turicensis z3032]
 gi|260217844|emb|CBA32357.1| Sensor kinase protein rcsC [Cronobacter turicensis z3032]
          Length = 703

 Score =  300 bits (768), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 98/425 (23%), Positives = 177/425 (41%), Gaps = 33/425 (7%)

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
           +     L  I+    N++ +  +             +    P + D     +++E     
Sbjct: 58  VPVDLVLERIRMLILNAVLLNVLVGIVLFTLARMYERRIFIPAEND----AQRLEEHEQF 113

Query: 454 LCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
              I+ +   GI I+  ++G  + +N            +  ++                 
Sbjct: 114 NRKIVASAPVGICILRTQDGTNIISNELAHNYLNMLTHEDRQR----------------- 156

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572
           LT+I+       ++      T     L +  +  +    +     + D+S   + +  L 
Sbjct: 157 LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSARVKMEESLQ 212

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
              + AE+ S  KS FLA VSHE+RTPL  IIG  ++++ Q      +         +  
Sbjct: 213 EMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTQELPKGVD----RLVTAMHN 268

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
           S +L+L I++D+LD SKIES ++ +     S  E +S   +  Q     K++ +      
Sbjct: 269 SSSLLLKIISDILDFSKIESEQLKIEPREFSPRELMSHITANYQPLVVRKQLGLYCFIEP 328

Query: 693 NIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751
           ++P  +L D   ++Q+  N+LSNAI FT  G  II+    T  + +  RVRDTGVG+   
Sbjct: 329 DVPMTLLGDPMRLQQVISNLLSNAIKFTDIG-CIILHVG-TQGDYLCFRVRDTGVGIPAK 386

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
           E+ +   PF Q+    Q   +GTGLGL + + +++   G   + +    G+   I  PL+
Sbjct: 387 EVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLINMMDGDISVDTETGMGSQFTIRIPLW 446

Query: 812 DTSHP 816
               P
Sbjct: 447 QAQLP 451


>gi|328951885|ref|YP_004369219.1| multi-sensor hybrid histidine kinase [Desulfobacca acetoxidans DSM
            11109]
 gi|328452209|gb|AEB08038.1| multi-sensor hybrid histidine kinase [Desulfobacca acetoxidans DSM
            11109]
          Length = 1310

 Score =  300 bits (768), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 95/745 (12%), Positives = 210/745 (28%), Gaps = 66/745 (8%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMR-LCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
            ID +  +   +    +  G     ++G +                +  + +         
Sbjct: 462  IDRNYNILWANAVAERLFGPN---LVGRKCYQCYRRQDEPCEPCVVAQVFQDGRIHEQSA 518

Query: 148  TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
             +  I+    Y     +    ++  R         +              +    +   L
Sbjct: 519  PVITIDDRTRYFWCTASVAGRHADGRP---QAVVEVSRDITERMQAEQALEEEAIRRRLL 575

Query: 208  HEIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
             E  +    V  +   ++               +V  L  +        +     +   +
Sbjct: 576  VEESRDGIVVLDQNGRVYEANRRYAEMLGYSPEEVRQLYIWDWDDQWSREELLEQIRCVD 635

Query: 266  ESSLPEQEDFHTINLNQYTKK--QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
             S    +      +      +       +                 +      E E    
Sbjct: 636  ASGDHFETRHRRKDGTLLDVEISTNGAVIGGQKLVFCVCRDISLRKAAEQALRESEEKFR 695

Query: 324  ETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
               +K PI    Y     +   N  F  +        I          +  +   ++ ++
Sbjct: 696  LVFEKAPIGIMHYDRTSTVTECNQKFEEIIGASKEYFIG--------FNMIRQLRDDKMR 747

Query: 383  PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
                               ++         +  I     +     +    I  +    + 
Sbjct: 748  QAAAASLRGEVGYYEDNYLSVT--GGKLTTVRAIFQPILSSEGSVLGGVAIMEDITARKQ 805

Query: 443  NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK--PFTVF 500
             +  +++    L   LE    G    N +   ++ N   +++ GY +E+I  +   +   
Sbjct: 806  AEAALQVARESLELALEGAGLGTWDWNCQTEAVTFNERWAEMLGYRLEEIEPQVKSWEKL 865

Query: 501  LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI---IIKKLPFSS--CYS 555
            +      V+   L            E       K    + +     +I++          
Sbjct: 866  VHPEDLPVVMEVLNAHREGKTP-FYEAEFRMQHKSGSWVWILDKGKVIERDAEGRPMRAC 924

Query: 556  LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
             T  DI+E ++ +     + K+    +         ++H+    LTAI+G   + K +R 
Sbjct: 925  GTHLDITERRRAQEDRLRSSKLESLAT-----LAGGIAHDFNNILTAILGNISLAKLERD 979

Query: 616  GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
                     E     +R+      + + LL  +K  S  M L    +S+   + E  S  
Sbjct: 980  EG-------ERLTDAERACLQAKALAHQLLTFAKGGSPIMEL----LSVANLIRETASFA 1028

Query: 676  QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG-------QIIIS 728
                   +++       N+  + AD   + Q+  N++ NA+   P GG        II+ 
Sbjct: 1029 ---CRGSQVVCEYDLPENLWMVHADAGQLGQVFQNLVINAVQAMPMGGAVKILGENIIVE 1085

Query: 729  TT----HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
                      + V + V+D G+G+    L +   P+            G+GLGL    ++
Sbjct: 1086 IGSNLPLNPGKYVKITVQDRGMGIPTEYLTRIFDPYFTTKQM------GSGLGLATVYSI 1139

Query: 785  VDANMGKFYIFSTPAKGTLIEIIFP 809
            + A+ G   + ST   GT  E+  P
Sbjct: 1140 IKAHKGHIAVESTLGLGTAFEVYLP 1164



 Score =  130 bits (328), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 38/403 (9%), Positives = 109/403 (27%), Gaps = 23/403 (5%)

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244
              +      A  + +         ++              +  +         ++    
Sbjct: 304 RELQETTGQLAQSRNMLHLIIESAPVRVFWKDKNLRYLGCNTLFARDAGFSYPQQLLGKD 363

Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFH---TINLNQYTKKQYFGTLQNNSKESFE 301
           ++     +  +  +       E+  P+++      T    +   +     L     E   
Sbjct: 364 DFVMGWREQAELYRADDRQVMETRHPKKDIIEPQTTPTGEKIWLRTSKVPLATVDGEVLG 423

Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-----FVYSHGNLFYANPSFLLLTKYKS 356
            L   +  + S   ++    + E +             +  + N+ +AN     L     
Sbjct: 424 VLGVYDDITASKEAEQALRESEERLAGIVQSVTDNMSMIDRNYNILWANAVAERLFG--- 480

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
            + +                     +     R              I  +          
Sbjct: 481 PNLVGRKCYQCYRRQDEPCEPCVVAQVFQDGRIHEQSAPV------ITIDDRTRYFWCTA 534

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476
                +          +  +  +    ++ +E E ++   ++E + DGI ++++ G +  
Sbjct: 535 SVAGRHADGRPQAVVEVSRDITERMQAEQALEEEAIRRRLLVEESRDGIVVLDQNGRVYE 594

Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
            NR  +++ GY  E++ +     + +Q +   +   +  + +          T    K+ 
Sbjct: 595 ANRRYAEMLGYSPEEVRQLYIWDWDDQWSREELLEQIRCVDASGD----HFETRHRRKDG 650

Query: 537 KLLSLRIII--KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI 577
            LL + I      +           DIS  K  +  L  +++ 
Sbjct: 651 TLLDVEISTNGAVIGGQKLVFCVCRDISLRKAAEQALRESEEK 693



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/160 (11%), Positives = 50/160 (31%), Gaps = 6/160 (3%)

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP-VEDILRKP 496
            + +    ++      L  I+E+    +   ++    L  N   ++  G+   + +L K 
Sbjct: 304 RELQETTGQLAQSRNMLHLIIESAPVRVFWKDKNLRYLGCNTLFARDAGFSYPQQLLGKD 363

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---- 552
             V   +    +      +++     +         T   + + LR     L        
Sbjct: 364 DFVMGWREQAELYRADDRQVMETRHPKKDIIEPQT-TPTGEKIWLRTSKVPLATVDGEVL 422

Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
                  DI+  K+ +  L  +++         +D ++ +
Sbjct: 423 GVLGVYDDITASKEAEQALRESEERLAGIVQSVTDNMSMI 462


>gi|320160588|ref|YP_004173812.1| putative two-component hybrid sensor and regulator [Anaerolinea
            thermophila UNI-1]
 gi|319994441|dbj|BAJ63212.1| putative two-component hybrid sensor and regulator [Anaerolinea
            thermophila UNI-1]
          Length = 1660

 Score =  300 bits (768), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 143/777 (18%), Positives = 256/777 (32%), Gaps = 91/777 (11%)

Query: 72   NTFVFDPIPRTVRFTWNIDAHGYLKEIS--EELPKTIGNYAFKMIGMRLCDVSDILHIDP 129
                   I R V   +  D+H  +  ++         G    + IG     V     +  
Sbjct: 670  TGVRMTEINRAVMLLFETDSHQRISRVTVQANWYSGRGTPPPE-IGTEFPRVIYERPLQT 728

Query: 130  NNH--IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187
            N       L +       K  L      +      LA LP+++  R+     G  +    
Sbjct: 729  NMQYFFESLEEAVLDEALKQDLLKQNVRS------LAILPMWAGKRQI----GVVLFEGE 778

Query: 188  RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247
                      + L      L  + +     E         Q           +SS     
Sbjct: 779  HKHIFTPREKRLLPPLIDQLTIVVENLRLFE-------QTQQALQETARLYNISSEIAAA 831

Query: 248  AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
            A+ D ++       L     ++      +        +   + ++   ++     L    
Sbjct: 832  ANADQMVDLVIREALPRGAEAVSLHLTTNVEGEMNEIEVAAYHSITGRTQFKGARLRASE 891

Query: 308  HPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
             P L    DEG            I F     G L   + + L     +S   + +  G  
Sbjct: 892  VPILFGLPDEG------------ISFADIDDGTLDPVSATTLKRFGIRSGIIVPLRSGGH 939

Query: 368  TL-----LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
            T+       +  +  + A   +    ++   +A    L  ++     +L +        +
Sbjct: 940  TVGVMGAFSSQPVRYDTAEVRIFQTVANGIAVALEK-LRLLEQAERRALELQTAAEIARD 998

Query: 423  QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII----LSTN 478
                 +  + +    V   + +  +                 I +++  G       S  
Sbjct: 999  TTST-LSTDVLLRRIVTLVVERFNLYQAS-------------IFLLDDSGTYAVVRESFG 1044

Query: 479  RAVSKLFGYPVE------------DILRKPF--------TVFLEQNTPSVMNHYLTEILS 518
             A  +L     +                +PF        T++            +   L 
Sbjct: 1045 PAAEQLKERKHKLAVGSRSVVGTVTATGEPFILNDVTTSTMYYPNPLLPETRSEMALPLR 1104

Query: 519  LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578
            L  R                    +    +              E  +       A +  
Sbjct: 1105 LGNRVIGALDLQSRNLN-AFRKDELSGLTILADQIAVAI-----ENARAYELAQKAVEEM 1158

Query: 579  EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
             +    KS FLA +SHE+RTPL +IIGFS VI     GP+ N    +    I  SG  +L
Sbjct: 1159 REVDRVKSQFLANMSHELRTPLNSIIGFSRVILRGIDGPI-NDTQKQDLTAIYNSGQHLL 1217

Query: 639  DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
            +++ND+LD+SKIE+GKM L F  V++ + ++ A+S       +K I + T   +N+P + 
Sbjct: 1218 NLINDILDLSKIEAGKMELSFSDVNMTDLINSAMSTAVGLVKDKPIKLITEIEDNLPIVR 1277

Query: 699  ADLRSVKQIALNILSNAIHFTPSGGQIIISTTH----TSNEEVILRVRDTGVGMTNYELE 754
            AD   V+Q+ +N LSNA  FT  G  I +            E+++ V DTG G+   +  
Sbjct: 1278 ADATRVRQVLINFLSNAAKFTDEGS-ITVRARRVRSPEGKPELMVTVTDTGPGIAEEDRS 1336

Query: 755  KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY-IFSTPAKGTLIEIIFPL 810
            K   PF Q+ +S   +  GTGLGL + +++++ + G+   + ST   G+      PL
Sbjct: 1337 KLFLPFSQVDDSPTRKTGGTGLGLSICRSLIEMHGGRIGLLESTVGVGSTFFFTLPL 1393



 Score = 47.7 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 32/305 (10%), Positives = 82/305 (26%), Gaps = 15/305 (4%)

Query: 65  TNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI 124
           T+ ++S      +   R + +TW  D  G    +S E+ + +G    ++IG         
Sbjct: 18  THEVESAPA-PSEISARPLGWTWEADEDGCYCRVSPEMGQILGVSEEEIIGKPFYRFLLE 76

Query: 125 LHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIV 184
             I  +           +   +  +   + +  ++   ++ L     +   +      I+
Sbjct: 77  EEIFVDFSTFSA----ESLPKEYLVRFQKVSGEWLEAKISILSAPD-DHTPTWKGTVAIL 131

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244
               + + P      ++ K       +K  S +   K    +  S      +  +   + 
Sbjct: 132 QTGEMAHQPVPAKPSVEVKPHTPSVARKTSSPLSPPKPFTPTFVSGGKIFGVSAEDGKIQ 191

Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQ--------YTKKQYFGTLQNNS 296
              A    +             S+  E      +  N             +    + +  
Sbjct: 192 LVTAPSTPLAMQSLQQKKPVAVSAQGELPAAIVVPENAGEYGKLLVEVIDETPQRIWDEE 251

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVDKC-PIPFFVYSHGNLFYANPSFLLLTKYK 355
           +                          E  ++       ++ + +L   N     LT   
Sbjct: 252 EHQLVLEVASQLALALENARLYNAAQQELAERVRAEQEILHRNQDLAILNRIGQRLTSLS 311

Query: 356 SVDDI 360
           S ++I
Sbjct: 312 SHEEI 316


>gi|320107428|ref|YP_004183018.1| multi-sensor signal transduction histidine kinase [Terriglobus
           saanensis SP1PR4]
 gi|319925949|gb|ADV83024.1| multi-sensor signal transduction histidine kinase [Terriglobus
           saanensis SP1PR4]
          Length = 448

 Score =  300 bits (768), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 82/443 (18%), Positives = 179/443 (40%), Gaps = 31/443 (6%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
               ++ ++   +         R+     +    +A++ +P          + +   E  
Sbjct: 28  PEWWVRILVALMAAGGMAWWCTRVVRRTLDTLQDIALSKVPESSEMHPAFRVFEPLAETI 87

Query: 437 DVDTRINKRKMEIEVM---QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
              +     ++E  +    ++ S+ +A  D I  I+    IL TN  + +L    +  + 
Sbjct: 88  TRLSSEAAERLEEGIQIRLKMESVFDAMKDPIVAIDSFERILWTNHRMRRLMARSLSSL- 146

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553
            K     +E          +   +         K+ L      K  ++  +         
Sbjct: 147 -KIGRALVETIRDPEALACVRRAMETGNPAKATKVLLLP---GKTFTVNAMP---MMDGG 199

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
             + + D++  +Q +                + +F+A VSHE+RTPLT+I G+ E +   
Sbjct: 200 VVVVLRDLTRIEQVE--------------RTQREFVANVSHELRTPLTSIAGYVETLLED 245

Query: 614 -RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
            R G        ++   I R+   +  +  DLL +++IES +  +   PV  +  + +A+
Sbjct: 246 PRLGVPNKGSARDFLGSIARNAARMTRLTEDLLALARIESKEHQVKPAPVDTNTLIHDAL 305

Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF--TPSGGQIIISTT 730
                +  EK  ++      +   I AD  ++ Q+  N++ NA+++  + +G +I+I+  
Sbjct: 306 DATSGFIREKEAVMDFGTLTS-EMIYADAGAIVQVLSNLIENAVNYGSSANGARIVIAVD 364

Query: 731 HTSN--EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
            + +    +   + D G G+ +  LE+  + F ++  ++ I   GTGLGL +A+ +V+ +
Sbjct: 365 ASRDTPGMMQFSITDNGPGIASEHLERVFERFYRVDQARAIGTHGTGLGLAIARNIVEQH 424

Query: 789 MGKFYIFSTPAKGTLIEIIFPLY 811
            G  ++ S   KG+      PL 
Sbjct: 425 GGTIWVESRLGKGSRFSFTLPLA 447


>gi|294508548|ref|YP_003572607.1| Signal transduction histidine kinase [Salinibacter ruber M8]
 gi|294344877|emb|CBH25655.1| Signal transduction histidine kinase [Salinibacter ruber M8]
          Length = 766

 Score =  300 bits (768), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 94/479 (19%), Positives = 180/479 (37%), Gaps = 32/479 (6%)

Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
                    + +   G      +    +     +               +          
Sbjct: 282 EEDLGRPLTETLPGLGETIRRGEPAWRAGFEKGEAQECREDRAMTAPTQSDASVRPAEHY 341

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE--ATSDGIA 466
               +      +         Q  +  +  + +  +R++     +  ++L       G+ 
Sbjct: 342 RYFRVIQTSLGQGMDT-----QTVVLSDITEQKHRERELRESERRFQAMLNDPNILAGVL 396

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFT--VFLEQNTPSVMNHYLTEILSLDLRQT 524
               +G     N            D+L +PF    + +    S +   +  +      + 
Sbjct: 397 A--PDGTFQKVNDTALGYIEATRADVLGRPFWETPWWDTENRSAVREKVERVAEG---EY 451

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQ-------EKNKLSH 573
           +       T + +  ++  I++ +           +T  DI+E K+        K +   
Sbjct: 452 VRFEAEHVTPDGEARTVTGIMRPVTGEEGEVVSIFVTARDITERKRKARRLKEAKEQAEL 511

Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
           +K  AE+ S  KS  LA +SHEIRTPLT IIGF+E I ++  G  G      +A+ I+ S
Sbjct: 512 SKLEAEEASRMKSAMLANMSHEIRTPLTGIIGFAEAIGDEIDGDGG---VAHFADLIEDS 568

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693
           G  +LD ++ +L++SK+E+G+M L   P+ L +   +        A++  + +       
Sbjct: 569 GRRLLDTLDAVLNLSKLEAGQMTLESRPIDLADQAQQVAREFAAEADDSGLALEVEAEEA 628

Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753
                AD   ++ +  N+LSNAI +T  G  + + T +  + E +L++ DTG+GM     
Sbjct: 629 --GARADEGGLQIVLQNLLSNAIKYTEEG-TVQVRT-YREDGEAVLQIEDTGIGMDPAVA 684

Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
           E   +PF Q         EGTG+GL + K   +   G   + +   +G+      P  D
Sbjct: 685 ESLFEPFRQGSEGLSREYEGTGIGLAVTKKATEQMGGSIDVETEKGEGSTFTARLPAAD 743



 Score = 48.5 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/333 (6%), Positives = 66/333 (19%), Gaps = 20/333 (6%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDV--SDILHIDPNNHIGDLLKRQNTWYGKTT 148
             G  +++++     I      ++G    +    D  +        + +        +  
Sbjct: 398 PDGTFQKVNDTALGYIEATRADVLGRPFWETPWWDTENRSAVREKVERVAEGEYVRFEAE 457

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK----- 203
               +G      +     P+     E      F                K   ++     
Sbjct: 458 HVTPDGEAR--TVTGIMRPVTGEEGEVV--SIFVTARDITERKRKARRLKEAKEQAELSK 513

Query: 204 --FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
                   +K    +    +              + +++          D +  + +  L
Sbjct: 514 LEAEEASRMKSAMLANMSHEIRTPLTGIIGFAEAIGDEIDGDGGVAHFADLIEDSGRRLL 573

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
            T +      + +   + L            Q   + + E         + A        
Sbjct: 574 DTLDAVLNLSKLEAGQMTLESRPIDLADQAQQVAREFAAEADDSGLALEVEAEEAGARAD 633

Query: 322 TPE----TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
                    +           G +               +   +   G+   +       
Sbjct: 634 EGGLQIVLQNLLSNAIKYTEEGTVQV---RTYREDGEAVLQIEDTGIGMDPAVAESLFEP 690

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
                  +    + T I  +      +    + 
Sbjct: 691 FRQGSEGLSREYEGTGIGLAVTKKATEQMGGSI 723


>gi|119484750|ref|ZP_01619232.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
 gi|119457568|gb|EAW38692.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
          Length = 727

 Score =  300 bits (768), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 88/268 (32%), Positives = 147/268 (54%), Gaps = 19/268 (7%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E  Q +++L    +  E+ S  KS+FLA +SHE+RTPL +I+GFS+++K Q  G L + R
Sbjct: 303 ERAQAQDRLRQINEDLERASQMKSEFLASMSHELRTPLNSILGFSDLLKRQISGELNH-R 361

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
            I +   I++SG  +L ++ND+LD+SKIE+GK  L+ + V +    +E + ++Q  A++K
Sbjct: 362 QINHVKLIEKSGQHLLQLINDILDLSKIEAGKTELNIQAVEVHRLCNECLKMIQPRADKK 421

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT----------HT 732
           R+ +       + ++  D R V+QI +N+LSNA+ FTP  G I +S            + 
Sbjct: 422 RLALSLELDYRLNQVALDERRVRQIIINLLSNAVKFTPEAGIIKLSGRLAYGSQMEGDYR 481

Query: 733 SN--------EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
            +          + L V+D+G+G+         +PF Q+  S   R EGTGLGL L K +
Sbjct: 482 PDCSPVNASTPYLCLEVQDSGIGIPEDRWHLLFRPFQQVDASLTRRHEGTGLGLALTKRL 541

Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPLYD 812
            + + G   + S   +G+   +  PL +
Sbjct: 542 AELHGGTVSLQSDVNQGSRFRVWLPLTE 569



 Score = 40.4 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/144 (12%), Positives = 45/144 (31%), Gaps = 19/144 (13%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV------ 499
            +E    +   IL    + IA+ +    ++  N  +++ +G   E +  +P         
Sbjct: 2   NLEQWWEEQELILNQIDNAIALFDPNSHLILFNLKLAQTWGLSSEFLASQPDCDTVFREI 61

Query: 500 ----FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555
               +  +     +   L +  S      LE+           L +   I     S    
Sbjct: 62  VNQGYWSEEQCQHLKACLLKSESQGSAFCLEQ------NNGVCLEVYTTITP---SGGCL 112

Query: 556 LTMHDISEWKQEKNKLSHAKKIAE 579
            T  +++  +  +  L+   +  +
Sbjct: 113 FTFREVTPLRNSQASLNSEVRRLK 136


>gi|153870538|ref|ZP_01999919.1| sensory box sensor histidine kinase/response regulator [Beggiatoa
           sp. PS]
 gi|152072999|gb|EDN70084.1| sensory box sensor histidine kinase/response regulator [Beggiatoa
           sp. PS]
          Length = 980

 Score =  300 bits (768), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 74/253 (29%), Positives = 126/253 (49%), Gaps = 3/253 (1%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           + +     L       ++    K++FLA  SHE+RTPL  IIG ++ + +   GPL  P 
Sbjct: 434 QLRASFKALEDQNAELQRLDKLKNEFLANTSHELRTPLNGIIGIADSLLDGATGPLPEPT 493

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                  I  SG  + ++VN++LD SK+    ++L  + V + E V    +L +    +K
Sbjct: 494 -RTNLVMIVVSGRRLANLVNNILDFSKLRHKSIDLQLKSVGMREIVEVVFTLSKPLIGKK 552

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
            +    + + ++P + AD   ++QI  N++SNAI FT SG +I IS     N  V   V+
Sbjct: 553 DLTFINNISVDLPPVYADENRLQQILHNLVSNAIKFTDSG-RIEISAEIKENLLVT-SVK 610

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG+G++  + E+  + F Q   S      GTGLGL + K +V+ + G  ++ S    G+
Sbjct: 611 DTGIGISEDKFERIFESFEQADGSTARVYGGTGLGLAVTKKLVELHGGTIHVASKVVVGS 670

Query: 803 LIEIIFPLYDTSH 815
                 P+ + + 
Sbjct: 671 RFTFTLPIAEPTE 683


>gi|320086707|emb|CBY96478.1| two component sensor kinase/response regulator protein RcsC
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. 2007-60-3289-1]
          Length = 915

 Score =  300 bits (768), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 98/426 (23%), Positives = 172/426 (40%), Gaps = 35/426 (8%)

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
           +     L  I+      L +  I                 E        +  +   E  Q
Sbjct: 270 VPVDLVLERIR-----ILILNAILLNVLVGAGLFTLARMYERRIFIPAESDAQRLEEHEQ 324

Query: 454 L-CSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
               I+ +   GI I+   +G+ + +N            +  ++                
Sbjct: 325 FNRKIVASAPVGICILRTIDGVNILSNELAHTYLNMLTHEDRQR---------------- 368

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571
            LT+I+       ++      T     L +  +  +    +     + D+S   + +  L
Sbjct: 369 -LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSTRVKMEESL 423

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
               + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R       ++
Sbjct: 424 QEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR---LVTAMN 479

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
            S +L+L I++D+LD SKIES ++ +     S  E ++   +        K++ +     
Sbjct: 480 NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFIE 539

Query: 692 NNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
            ++P  +  D   ++Q+  N+LSNAI FT  G  I++       + + +RVRDTGVG+  
Sbjct: 540 PDVPVSLNGDPMRLQQVISNLLSNAIKFTDIG-CIVLHVRC-DGDYLSIRVRDTGVGIPA 597

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+   +  PL
Sbjct: 598 KEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTLRIPL 657

Query: 811 YDTSHP 816
           Y   +P
Sbjct: 658 YGAQYP 663


>gi|226226406|ref|YP_002760512.1| putative two-component hybrid sensor and regulator [Gemmatimonas
           aurantiaca T-27]
 gi|226089597|dbj|BAH38042.1| putative two-component hybrid sensor and regulator [Gemmatimonas
           aurantiaca T-27]
          Length = 1005

 Score =  300 bits (768), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 100/664 (15%), Positives = 209/664 (31%), Gaps = 34/664 (5%)

Query: 174 EFSGFRGFGIV---HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP 230
               F GF IV    +         L    ++  + L  I     + +     I      
Sbjct: 208 ALVAFLGFVIVLRRELAARGQAADQLVAERERLDTTLRSIGDAVITTDTSGNIITMNALA 267

Query: 231 PPHLRMKNKVS---SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTI-----NLNQ 282
                +    +    L E Y    D   +     + +  +    + + H++     +   
Sbjct: 268 EQLTGLPAMAAVGKPLEEVYRIPFDPSASHAEHPVRAVLAGRRARTELHSLTLRAHDGTA 327

Query: 283 YTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP-----IPFFVYS 337
               Q    +   S E    +      S      +      + +         + F +  
Sbjct: 328 RPIDQTAAAIVTPSGERLGGVLVFRDVSEQQAAQQRIRYGQQRLQLALRSARLVSFDIAR 387

Query: 338 HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397
                  + +   +        +        ++    L     I+ +            +
Sbjct: 388 DTRELTLSENGTDVFGLAPGHVLRTLDDALAIVHPEDLP--AVIEALQSVDEPGESFLVA 445

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
            R+          + +                  G+  +    R  +  +     +  S+
Sbjct: 446 CRIRREVPGDIGWVEVRGEVQLTREGKKLLT---GLVLDVTARRAVEMSLRESEERFRSM 502

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
            ++    I +   +G I   N+      G    D+        +  +       Y  E L
Sbjct: 503 ADSAPVMIWMAASDGSITYVNQRWHDFTGIGSVDLATLVPFARVHPDDREDQLRYFHEAL 562

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSH 573
                +T  +       +     +                +  ++ DI + KQ +N+L  
Sbjct: 563 E--AHRTFRQELRMRRHDGSYRWVINTATPRFGDDGEFLGFIGSVLDIEDRKQLENELRS 620

Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
                      K +FLA ++HE+R PL  +    E+++     P    R         R 
Sbjct: 621 LASDLSDADRRKDEFLATLAHELRNPLAPLRNGVEILRLAAPSPEIIERTRGMME---RQ 677

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693
              ++ +V+DLLD+S+I SGK+ L  + ++L   ++ A          +   +  +  + 
Sbjct: 678 LGQLVRLVDDLLDVSRITSGKLELRHDLLTLQIKLTNAAEASGPTLTARSQRLHINAPDA 737

Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753
              +  D   + QI  N+L NA  ++P    I ++ T   + + I+ V+D G G+  + L
Sbjct: 738 PVVVEGDAARLSQIFANLLDNASKYSPPNTDIHVTITTRDD-QAIVTVQDAGQGIPRHLL 796

Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA--KGTLIEIIFPLY 811
            K    F Q+  + +    G G+GL L K +V+ + G     S P   +G+   ++ PL 
Sbjct: 797 HKVFDLFAQVDRTLERTTGGLGIGLTLVKRLVEMHGGSITADS-PGESQGSTFTVVLPLA 855

Query: 812 DTSH 815
            T+ 
Sbjct: 856 TTAA 859



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 43/381 (11%), Positives = 102/381 (26%), Gaps = 24/381 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHID---PNNHIGDLLKRQNTWY 144
            D  G +  ++    +  G  A   +G  L +V             + +  +L  +    
Sbjct: 254 TDTSGNIITMNALAEQLTGLPAMAAVGKPLEEVYRIPFDPSASHAEHPVRAVLAGRRART 313

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
              +L          PID  A  I + + E  G  G  +          +   +   ++ 
Sbjct: 314 ELHSLTLRAHDGTARPIDQTAAAIVTPSGERLG--GVLVFRDVSEQQAAQQRIRYGQQRL 371

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQS-------PPPHLRMKNKVSSLTEYYAHKDDVLKTE 257
                  +  S          +            P   ++    +L   +      +   
Sbjct: 372 QLALRSARLVSFDIARDTRELTLSENGTDVFGLAPGHVLRTLDDALAIVHPEDLPAVIEA 431

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE---SFEYLSHRNHPSLSAY 314
              +    ES L        +  +    +           +   +   L      ++   
Sbjct: 432 LQSVDEPGESFLVACRIRREVPGDIGWVEVRGEVQLTREGKKLLTGLVLDVTARRAVEMS 491

Query: 315 FDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
             E E       D  P+  +   S G++ Y N  +   T   SVD       L+TL+   
Sbjct: 492 LRESEERFRSMADSAPVMIWMAASDGSITYVNQRWHDFTGIGSVD-------LATLVPFA 544

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
           ++  ++    +  +           +   ++ +  +   +      +     E +   G 
Sbjct: 545 RVHPDDREDQLRYFHEALEAHRTFRQELRMRRHDGSYRWVINTATPRFGDDGEFLGFIGS 604

Query: 434 EPEDVDTRINKRKMEIEVMQL 454
             +  D +  + ++      L
Sbjct: 605 VLDIEDRKQLENELRSLASDL 625



 Score = 68.5 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 35/254 (13%), Positives = 68/254 (26%), Gaps = 11/254 (4%)

Query: 69  DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM-IGMRLCDVSDILHI 127
           +SE  F        V   W   + G +  +++      G  +  +   +    V      
Sbjct: 494 ESEERFRSMADSAPV-MIWMAASDGSITYVNQRWHDFTGIGSVDLATLVPFARVHPDDRE 552

Query: 128 DPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187
           D   +  + L+   T+  +  +   +G+  Y  +   A P +  + EF GF   G V   
Sbjct: 553 DQLRYFHEALEAHRTFRQELRMRRHDGS--YRWVINTATPRFGDDGEFLGF--IGSVLDI 608

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247
                     + L    S     K    +    +        P   LR   ++  L    
Sbjct: 609 EDRKQLENELRSLASDLSDADRRKDEFLATLAHELRN-----PLAPLRNGVEILRLAAPS 663

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
               +  +      L      + +  D   I   +   +    TLQ     + E      
Sbjct: 664 PEIIERTRGMMERQLGQLVRLVDDLLDVSRITSGKLELRHDLLTLQIKLTNAAEASGPTL 723

Query: 308 HPSLSAYFDEGENL 321
                       + 
Sbjct: 724 TARSQRLHINAPDA 737


>gi|149910443|ref|ZP_01899084.1| sensor histidine kinase FexB [Moritella sp. PE36]
 gi|149806502|gb|EDM66473.1| sensor histidine kinase FexB [Moritella sp. PE36]
          Length = 782

 Score =  300 bits (768), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 92/396 (23%), Positives = 174/396 (43%), Gaps = 19/396 (4%)

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
            K  +   N     +E E       +  +E     + S ++++ D +   N +G     N
Sbjct: 122 RKKAEADRNQAFKDLENEVFHREQAQLIVEERSALVRSFIDSSPDLVYYSNEQGQFSGCN 181

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
            A+  L G   ++++        +    +        +L+  L +T E+        +  
Sbjct: 182 LAMEALTGKIEKELIGLTPFDAFDTEIAAKFAATDKAVLNTKLPETYEQWLTYPDGHKAC 241

Query: 539 LSLRIII--KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
             LR +    +            DI+E K+        +   EK S  K+ F++ +SHE+
Sbjct: 242 FELRKVPFFGQRNEYIGVLGYGRDITERKK-------YQDALEKASRDKTTFISTISHEL 294

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTPL  ++G S ++ +       N    ++ N I  S + + +I ND++D+ K +  K  
Sbjct: 295 RTPLNGVVGLSRILLDSSL----NAEQRQHLNTIYVSAHTMGNIFNDIIDLDKFDRRKFE 350

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNA 715
           +  +P+     +++  +L  L   +K +++      +IP  I AD   ++Q+  N++SNA
Sbjct: 351 IVNQPIEFRSFLNDIETLALLQVEQKGLVLAFDIFGDIPDFINADGTRMRQVLWNLVSNA 410

Query: 716 IHFTPSGG-QIIISTTHTSNEEV--ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           + FT SG   I I T+  +N ++     V DTG+G++    +K    + Q   S   R  
Sbjct: 411 VKFTDSGEISIRIFTSEEANNKIGLTFEVEDTGIGISADGQDKIFAMYYQEQGS--KRAT 468

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           GTG+GL +AK+++ A  G  ++ S   KG+   I F
Sbjct: 469 GTGIGLSVAKSLMTAMGGDIWVSSELGKGSCFTIEF 504



 Score = 41.9 bits (97), Expect = 0.44,   Method: Composition-based stats.
 Identities = 25/217 (11%), Positives = 56/217 (25%), Gaps = 10/217 (4%)

Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN- 307
           H    L    Y L       L  Q++     +    + +     + +  ++F+ L +   
Sbjct: 82  HSRKRLSKMVYKLQEVRARDLQLQQELQVNLIELNAEFEERKKAEADRNQAFKDLENEVF 141

Query: 308 -HPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365
                    +E   L    +D  P   +     G     N +   LT     + I +   
Sbjct: 142 HREQAQLIVEERSALVRSFIDSSPDLVYYSNEQGQFSGCNLAMEALTGKIEKELIGLTPF 201

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
            +   D    +   A    +L                + +   +             Q  
Sbjct: 202 DA--FDTEIAAKFAATDKAVLNTKLP-----ETYEQWLTYPDGHKACFELRKVPFFGQRN 254

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
           E +   G   +  + +  +  +E       + +   S
Sbjct: 255 EYIGVLGYGRDITERKKYQDALEKASRDKTTFISTIS 291


>gi|158523278|ref|YP_001531148.1| PAS/PAC sensor hybrid histidine kinase [Desulfococcus oleovorans
           Hxd3]
 gi|158512104|gb|ABW69071.1| PAS/PAC sensor hybrid histidine kinase [Desulfococcus oleovorans
           Hxd3]
          Length = 1079

 Score =  300 bits (768), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 109/760 (14%), Positives = 226/760 (29%), Gaps = 82/760 (10%)

Query: 92  HGYLKEISEELPKTIG---NYAFKMIGMRLCDVSDILHIDPNNHIGD-------LLKRQN 141
              +   S    +  G       +        ++        + I               
Sbjct: 220 DDTIFFWSRSALELFGHTAYTTSE-----WYQIAYPDPDYRQDVIERWKPFLEKARNSGQ 274

Query: 142 TWY-GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
           T   G+  +   +G+     +    LP    +     F                A  +  
Sbjct: 275 TVNTGEYRVTCKDGSERICELYATFLP----DNLIVTFS------DITEQKKAEASLRSN 324

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP------PHLRMKNKVSSLTEYYAHKDDVL 254
                   E           K  I +           PH         +  Y     + +
Sbjct: 325 YALLQIAGETAGFGGWDVDLKTYISTWSDTVADIHEMPHGYAPPVEEGIKFYAPEWRERI 384

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
                     +     E+ +  T    +   +    ++++ +    +        S    
Sbjct: 385 TRVFT-DCAQKGIPYDEEMEILTSKGKRVWVRTIGRSVKDENGRIIKVQGSFQDISEHKR 443

Query: 315 FD----EGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
            +    E   L     D       +    GN  +   S   +  Y  +D +     L   
Sbjct: 444 TEGKLKEQAQLFKAVSDNMFDLVALTDLEGNFIFVGASH-NILGY-DIDSLIGRNVLE-- 499

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
              P+     ++       +         R    +   E+ L    +     +   +   
Sbjct: 500 FVHPEDVQQVSVSFRDFLSTGDDSRKVEYR---YRCADESYLWFETVGRFVRDDNGDLKG 556

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
                 +  + R  +++++    +  ++  A+  GIAI ++ G+IL  N+ +S++ GY  
Sbjct: 557 IVFSTRDVTERRRIEQELKESEERFRALHNASFGGIAIHDK-GLILECNQGLSEITGYTY 615

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
           ++++       +   T   +   +         +  E   +        L L     +  
Sbjct: 616 DELIGMQGLSLISDGTRDKVVRNINA----GYEKPYEAEGVRKNGGIYPLRLEARNIRYK 671

Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS--DFLARVSHEIRTPLTAIIGFS 607
                 +   DI+E K+ + +  H +         +S       V+H+    L  I+G++
Sbjct: 672 GKDVRVVEFRDITENKRAEKEKEHLEAQLSHAQKMESVGRLAGGVAHDFNNMLNVILGYT 731

Query: 608 EVIKN--QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
           E+      +  PL N         I  +     DI   LL  ++    +  +    + L+
Sbjct: 732 ELALQNMDKDDPLYND-----LTEILDAARRSSDITRQLLAFAR----RQTIAPRTIDLN 782

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725
           E V   + +++     + I +    ++ +  +  D   V Q+  N+L NA       G++
Sbjct: 783 ETVEGMLKMLRRLI-GEDIDLAWEPSSGLWLVNMDPAQVDQVLANLLVNARDAIDGVGRV 841

Query: 726 IIST--------------THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
            I T                   E V+L V D+G GM    ++   +PF          G
Sbjct: 842 TIETDNAVLDEAYCADRPGFVPGEFVLLAVSDSGCGMDKNTMDNLFEPFFTTKT----VG 897

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
           +GTGLGL     +V  N G   + S P +GT  +I  P +
Sbjct: 898 KGTGLGLATVYGIVRQNEGFITVHSEPGQGTTFKIYLPRH 937



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/266 (14%), Positives = 78/266 (29%), Gaps = 20/266 (7%)

Query: 322 TPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
                   P+   V+  G           LT    +    + G L+     P     +  
Sbjct: 80  AAAVASALPMACRVWLGG--------AGTLTGLLVILSSAVVGLLARYRLQPDTRPPSVQ 131

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
              +   +    +A  A + T+      ++     P          +    I  + V   
Sbjct: 132 ALYLFGMA--VHLAMIALMFTLPEGAGMAVIRRIGPPVLLLYPLATILAGKILSDQVKAG 189

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPV----EDILRKP 496
                +     +L + L+AT   IA+++ ++  I   +R+  +LFG+      E      
Sbjct: 190 QQLAVLLESEKRLRATLDATPFPIAVVDLQDDTIFFWSRSALELFGHTAYTTSEWYQIAY 249

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQ-TLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555
                 Q+       +L +  +      T E         E++  L              
Sbjct: 250 PDPDYRQDVIERWKPFLEKARNSGQTVNTGEYRVTCKDGSERICELYATFLPDN----LI 305

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKE 581
           +T  DI+E K+ +  L     + +  
Sbjct: 306 VTFSDITEQKKAEASLRSNYALLQIA 331


>gi|310830013|ref|YP_003962370.1| hypothetical protein ELI_4473 [Eubacterium limosum KIST612]
 gi|308741747|gb|ADO39407.1| hypothetical protein ELI_4473 [Eubacterium limosum KIST612]
          Length = 803

 Score =  300 bits (768), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 99/477 (20%), Positives = 180/477 (37%), Gaps = 28/477 (5%)

Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
           DD+   G  ST             +  +L   +               +       T + 
Sbjct: 187 DDLLEQGIRSTHPSYSSALRETFGRQNVLKAFENGKRELQLDFRQKDEDGTYHWMNTLLL 246

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
                   E      +  +    +  +++ E     + ++     + + +   +G   + 
Sbjct: 247 RVG--SAAEKGKAILMLSQIDSRKRLEQEWEAFNAGVTTLF---GECMLLNLEDGTYTTA 301

Query: 478 ---NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY--LTEILS--LDLRQTLEKITL 530
              N           +    +     +  +   +      L  I          + +   
Sbjct: 302 KFDNSFPEFPVQGDFDSQNIEYCNALIHPDDREMFRKAFSLESIRESVAAGETVIVRELR 361

Query: 531 GSTKEEKLLSLRII----IKKLPFSSCYSLTMHDISEWKQEKNK----LSHAKKIAEKES 582
               +       +I    I          LT  D+ + ++E+ +    L  A  +AE+ +
Sbjct: 362 RLAPDGVYRWTEMIGILVISAAVGERTVVLTFRDVDDIRKEEERKRAALLDALNLAEQAN 421

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
           + KSDFL+R+SH+IRTP+ AIIG + + +      +      +  + I  S + +L ++N
Sbjct: 422 NAKSDFLSRMSHDIRTPMNAIIGMASIAEANIRDTVKTE---DCIHKIQASAHFLLALIN 478

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADL 701
           D+LD+SKIESGKM++  EP  L   + E   ++   A EK          ++      D 
Sbjct: 479 DILDMSKIESGKMSIIREPFDLCALLRELEVIIDAQAREKGQQFSVLMPAHMEAEYYGDS 538

Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAM 757
             + QI +N+LSNA+ +TP GG+I +       +     +   V D G+GM+   L+   
Sbjct: 539 LRLNQILMNLLSNAVKYTPDGGKITLRVNEDRKKGKKSVMRFEVEDNGIGMSEAFLKHIY 598

Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           +PF Q    ++ R EGTGLGL + + +V    G   I S   KGT   +  P     
Sbjct: 599 EPFRQDERKEEKRQEGTGLGLSITRNLVHLMGGSISISSELGKGTCFTVELPFVQEE 655


>gi|300864857|ref|ZP_07109705.1| multi-sensor signal transduction histidine kinase [Oscillatoria sp.
           PCC 6506]
 gi|300337150|emb|CBN54855.1| multi-sensor signal transduction histidine kinase [Oscillatoria sp.
           PCC 6506]
          Length = 702

 Score =  300 bits (768), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 83/426 (19%), Positives = 170/426 (39%), Gaps = 66/426 (15%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            ++  E  +L +++   +DG  +++    I+  N    ++FG+  ++++ +    +L   
Sbjct: 275 EELTAEKAKLETLVSTIADGAVLLDANLYIILVNPTARRIFGWEYKNVIGENVLNYLPAE 334

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----------- 553
               +   L +I +   R+  E     +    + + + +    L  +             
Sbjct: 335 VQLEVARPLYQI-AGGDREGGEFRCSLTEPINRTVRILVTTVTLHKAPGSEPLCKSCLHE 393

Query: 554 -------------YSLTMHDISEWKQEKNKLSHAKK----------IAEKESSHKSDFLA 590
                        +  +++  S       +     K             + +  KS F++
Sbjct: 394 ERNTCTEAPRPDAFECSLYFESAKSHLPEEYRDNLKGIAMTIQDITREVELNEAKSQFIS 453

Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650
            VSHE+RTPL  I  F E + ++    L      E+    +   + +  +VND+LD+S++
Sbjct: 454 NVSHELRTPLFNIKSFIETL-HEYGEDLSEAERREFLETANHETDRLTRLVNDVLDLSRL 512

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710
           ES ++  HF+ V + +AV + +   QL A +K I +      ++P +L     + Q+  N
Sbjct: 513 ESCRI-YHFDGVDIAQAVEQTLRTYQLNAKDKGIELIQELDPDLPAVLGHYDLLLQVFAN 571

Query: 711 ILSNAIHFTPSGGQIIIS-----TTHTSNEE-----------------------VILRVR 742
           ++ NA+ FT SGG+I I           ++                        V + + 
Sbjct: 572 LVGNALKFTHSGGKIAIRASQLDVEVREDKYEVANEESSPGNYSLSHAVPPSKLVRIEIS 631

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG+G+   + E     F ++ N +    EGTGLGL + + ++D +  K ++ S    GT
Sbjct: 632 DTGIGIDAEDQEAIFDRFFRVEN-RVHTLEGTGLGLSIVRNIIDKHHTKVHLVSEVGVGT 690

Query: 803 LIEIIF 808
                 
Sbjct: 691 TFWFDL 696


>gi|238789934|ref|ZP_04633714.1| Signal transduction histidine-protein kinase atoS [Yersinia
           frederiksenii ATCC 33641]
 gi|238722007|gb|EEQ13667.1| Signal transduction histidine-protein kinase atoS [Yersinia
           frederiksenii ATCC 33641]
          Length = 593

 Score =  300 bits (768), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 94/374 (25%), Positives = 171/374 (45%), Gaps = 28/374 (7%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           R +         ILE+ +DG+  ++ +G +   N A   + GY  ++++ KP+    E+ 
Sbjct: 240 RALRETKTLNELILESAADGVISVDIKGCVTMINPAGEIITGYSRKELIGKPYAEVFEKV 299

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHD 560
                   L  +        LE    G     + + L I   +L  +            D
Sbjct: 300 DFDS--PVLDTLFRGIKHVALEIDYPGKN---RTIQLSISTSQLRNAQGETLGALAIFTD 354

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           ++  K+ + ++  A+++A        + +A V+HE+R PLTAI GF +++K+       +
Sbjct: 355 LTAKKEVQRRIEQAERLAT-----LGELMAGVAHEVRNPLTAISGFVQILKD----SEKD 405

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
           P+ +EY + I +    +  ++  LLD S+   G+    +  V+L++ + E++ LV+    
Sbjct: 406 PQRLEYTHIILKEVQSINRVIQQLLDFSRPRIGR----YHQVNLNQIIRESLILVKTKGV 461

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
           E R+        N+  I AD   +KQ+ LNIL NA+    + G+IIIST    +    + 
Sbjct: 462 EARVDFHVQLDENLSDIEADGELLKQVLLNILINAVQSIVARGEIIISTQALDDNYQQIT 521

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           ++D G G+      K   PF     S      GTGLGL +++ ++ ++ G   + S P K
Sbjct: 522 IQDNGCGIAEDIKAKVFDPFYTTKPS------GTGLGLSISQRIIASHDGDIRLESQPNK 575

Query: 801 GTLIEIIFPLYDTS 814
           GT   II P+   +
Sbjct: 576 GTTFIIILPVKHGA 589



 Score = 48.1 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 37/272 (13%), Positives = 84/272 (30%), Gaps = 11/272 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D  G +  I+       G    ++IG    +V + +  D    + D L R         
Sbjct: 263 VDIKGCVTMINPAGEIITGYSRKELIGKPYAEVFEKVDFDSP--VLDTLFRGIKHVALEI 320

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
            +P  G N  + + ++   + +   E  G     I        + +   ++ ++  +   
Sbjct: 321 DYP--GKNRTIQLSISTSQLRNAQGETLGA--LAIFTDLTAKKEVQRRIEQAERLATLGE 376

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
            +      V      I              +    T     +   +      LL     S
Sbjct: 377 LMAGVAHEVRNPLTAISGFVQILKDSEKDPQRLEYTHIILKEVQSINRVIQQLLDF---S 433

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
            P    +H +NLNQ  ++     ++    E+      +   +LS    +GE L    ++ 
Sbjct: 434 RPRIGRYHQVNLNQIIRESLIL-VKTKGVEARVDFHVQLDENLSDIEADGELLKQVLLNI 492

Query: 329 CPIPFF-VYSHGNLFYANPSFLLLTKYKSVDD 359
                  + + G +  +  +     +  ++ D
Sbjct: 493 LINAVQSIVARGEIIISTQALDDNYQQITIQD 524


>gi|198244777|ref|YP_002216340.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|197939293|gb|ACH76626.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
          Length = 915

 Score =  300 bits (768), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 98/426 (23%), Positives = 172/426 (40%), Gaps = 35/426 (8%)

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
           +     L  I+      L +  I                 E        +  +   E  Q
Sbjct: 270 VPVDLVLERIR-----ILILNAILLNVLVGAGLFTLARMYERRIFIPAESDAQRLEEHEQ 324

Query: 454 L-CSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
               I+ +   GI I+   +G+ + +N            +  ++                
Sbjct: 325 FNRKIVASAPVGICILRTIDGVNILSNELAHTYLNMLTHEDRQR---------------- 368

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571
            LT+I+       ++      T     L +  +  +    +     + D+S   + +  L
Sbjct: 369 -LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSTRVKMEESL 423

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
               + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R       ++
Sbjct: 424 QEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR---LVTAMN 479

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
            S +L+L I++D+LD SKIES ++ +     S  E ++   +        K++ +     
Sbjct: 480 NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFIE 539

Query: 692 NNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
            ++P  +  D   ++Q+  N+LSNAI FT  G  I++       + + +RVRDTGVG+  
Sbjct: 540 PDVPVSLNGDPMRLQQVISNLLSNAIKFTDIG-CIVLHVRC-DGDYLSIRVRDTGVGIPA 597

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+   +  PL
Sbjct: 598 KEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTLRIPL 657

Query: 811 YDTSHP 816
           Y   +P
Sbjct: 658 YGAQYP 663


>gi|159184529|ref|NP_353940.2| two component sensor kinase [Agrobacterium tumefaciens str. C58]
 gi|159139836|gb|AAK86725.2| two component sensor kinase [Agrobacterium tumefaciens str. C58]
          Length = 510

 Score =  300 bits (768), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 103/356 (28%), Positives = 182/356 (51%), Gaps = 7/356 (1%)

Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL 519
                +  +N  G++   +      F   ++    + F  ++  +    +      +   
Sbjct: 107 QVPGLVLTLNENGLVERVSGRDRDSFPADLKASKGEIFAEYVYVSDRIELMQAFDLLRQG 166

Query: 520 DLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSH 573
           + + T E    T   +++ + + +RI +  +  ++         + D++E ++ +  ++ 
Sbjct: 167 EDKATAELRFETGAKSRQTQFMHVRIEMTAIRGATGRLRRIVAQLSDVTEMERLRRDVAR 226

Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
               AE  +  KS FLA VSHE+RTPL A++GFS+++  + FG L N R  EY   I +S
Sbjct: 227 KAAEAESANDAKSRFLAAVSHELRTPLNAVLGFSDILAGEYFGRLENDRQREYVGLIRQS 286

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693
           G  +L +VN +LD+SK+E+G+  L  E   + E ++   +++ L A EK + + +     
Sbjct: 287 GAHLLSVVNTMLDMSKLEAGRYELLMESFPISETIASCEAMLGLQAKEKGLTLTSRIQRG 346

Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753
           I  I AD R+++Q+ +N+  NAI FT +GG + I         + L V DTG+G+ + ++
Sbjct: 347 IGEISADQRAIRQVLINLAGNAIKFTDAGGVVSIDAA-REGGMLKLTVSDTGIGIASDKI 405

Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           E   +PF Q+ N    R EGTGLGL L K +V  + G F I S PA+GT++ I  P
Sbjct: 406 ELLGQPFMQVQNEYTRRYEGTGLGLSLVKGLVALHGGTFVITSKPAEGTVVTITLP 461


>gi|317499092|ref|ZP_07957371.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316893612|gb|EFV15815.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 985

 Score =  300 bits (768), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 102/367 (27%), Positives = 168/367 (45%), Gaps = 12/367 (3%)

Query: 460 ATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEI 516
              D   +++ +       +  V KL G  +E I            ++       YL EI
Sbjct: 346 NVDDVFLMLDAKTYQADYVSPNVEKLLGITIEQIREDICILGELHSEDMKDSKKDYLKEI 405

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKK 576
              + ++   +     T E +      +  ++  +  Y L M D +  K+    LS A  
Sbjct: 406 QVHEQQEWDFECVHQKTGERRWFHSVAMGSEVNGNKKYILVMSDRTADKKMNQALSDAVY 465

Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
            AE  +  KS FL+ +SH+IRTP+ AIIGF+ +  +            +Y   I  S N 
Sbjct: 466 AAENANQAKSTFLSNMSHDIRTPMNAIIGFTTLAVSNID---NKKMVRDYLGKILSSSNH 522

Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS-FANNIP 695
           +L ++ND+LD+S+IESGK++L    VSL + + +  +++    + K++ +          
Sbjct: 523 LLSLINDILDMSRIESGKIHLEETEVSLSDVLHDLKTIISGQIHAKQLELYMDAMDVTNE 582

Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-----TSNEEVILRVRDTGVGMTN 750
            +  D   + QI LN+LSNAI FTP+GG I +            +   +RV+D G+GM+ 
Sbjct: 583 DVYCDKTRLNQILLNLLSNAIKFTPAGGMISVRLKQYPGTQRERQLYEIRVKDNGIGMSE 642

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             ++K   PF +  +S   R +GTGLG+ + K +VD   G   I +   KGT   +  PL
Sbjct: 643 DFVQKLFSPFERERSSTVSRTQGTGLGMAITKNIVDMMGGNIEIQTEQGKGTEFIVRLPL 702

Query: 811 YDTSHPH 817
              S  H
Sbjct: 703 RIQSKHH 709


>gi|313204630|ref|YP_004043287.1| pas/pac sensor signal transduction histidine kinase [Paludibacter
            propionicigenes WB4]
 gi|312443946|gb|ADQ80302.1| PAS/PAC sensor signal transduction histidine kinase [Paludibacter
            propionicigenes WB4]
          Length = 1141

 Score =  300 bits (768), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 100/759 (13%), Positives = 246/759 (32%), Gaps = 76/759 (10%)

Query: 88   NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI-DPNNHIGDLLKRQNTWYGK 146
             +D +G     +E   K +G    ++IG    +++  L+  + +N I  L + +      
Sbjct: 413  RLD-NGTYVLANEGFTKILGYTENEIIGRTSLEMNIWLNPAERDNWIKILFEDRKVDNFV 471

Query: 147  TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF-GIVHVNRVDNDPRALGKRLDKKFS 205
            T      G  +Y  +  A +       E  G      +              +  ++K+ 
Sbjct: 472  TQFRTKTGELIYALVSAAII-------ELDGIPHVLSLTRDITKQKLVENSLRSSEEKYR 524

Query: 206  HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK---NKVSSLTEYYAHKDDVLKTEKYPLL 262
             L E       +   +       +P          +++ +      +     +       
Sbjct: 525  SLFENNTSVMLLINPETAEIVDANPTACEFYGWTYDEICTKKITDINILPSDEIFNVMKD 584

Query: 263  TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL--SHRNHPSLSAYFDEGEN 320
               +            N      + +   +++  K     +     +        +E E 
Sbjct: 585  AKLKGRKHFHFVHRKANGELRDIEAFSTPIKDGDKNFLFTIIHDITSRVRAQKALNESEE 644

Query: 321  LTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
               +     P    +     G     N  F  +  Y   + +  +     +         
Sbjct: 645  KFKKAFTTSPDSVSINRLEDGVYVSVNDGFTRIMGYDRDEILGQSSIDKNVWVDANDRKK 704

Query: 379  NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
               +     +         A+  T   + +    M      + +          I  +  
Sbjct: 705  MVNE----VKEKGFIENLVAQFRT--KSGKLVYGMMSASIIELDG---VKHVLNITRDID 755

Query: 439  DTRINKRKMEIEVMQLCSILEATSDGI----AIINREGI-----ILSTNRAVSKLFGYPV 489
              +  ++ ++    +L ++  + ++ +     + + +G      I   N A  ++FG   
Sbjct: 756  KLKQAEKALQESEEKLSTLFSSMTEMVAMHELVFDEDGNVINYQITDCNNAYCQIFGIKK 815

Query: 490  EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
            ED++ K           +      +++                    +   +  +  K  
Sbjct: 816  EDVIGK-LATEFYHCESAPYLELYSKVGITGESYEFN---TFYAPAGRHFLISAVSTK-- 869

Query: 550  FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
              +C+S    DI++ ++ +  ++         +    ++L   SH++R+PL  I GFS+ 
Sbjct: 870  -KNCFSTIASDITDIQRIQELITDK-------NKELENYLYVASHDLRSPLINIQGFSQR 921

Query: 610  IKNQ-------------------RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650
            ++ Q                       + N    +  ++I  + + +  ++  LL IS+ 
Sbjct: 922  LQKQSEDIKAILADSKSESEKKAEIDKITNEGMPKTVDFILSNVSKMDTLIKSLLQISR- 980

Query: 651  ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710
             SG++ L+   + +++ +++ I+       E    +      N+     D   + Q+  N
Sbjct: 981  -SGRLMLNVNKIDMNQLINKIIAAHNYQITELSAQVIIQ---NLDYCYGDENQLNQLFSN 1036

Query: 711  ILSNAIHFTPSGGQIIISTTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
            I+ NA+ +      + I  +     ++V   + DTG+G++++  EK    F ++      
Sbjct: 1037 IIDNALKYHDPNRLLKIEISSEVQYKKVRYAISDTGIGISSHSFEKIWDVFYRVDAKSSQ 1096

Query: 770  RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
             GE  G+GL +AK +   + GK ++ S   KG+   I  
Sbjct: 1097 VGE--GIGLSIAKRIASKHNGKIWVESVEGKGSTFFIEL 1133



 Score =  100 bits (250), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 59/510 (11%), Positives = 148/510 (29%), Gaps = 35/510 (6%)

Query: 87  WNIDAHGYLKEIS----EELPKTIGNYAFKMIGMRLCD--VSDILHIDPNNHIGDLLKRQ 140
           +++D        +      + +         +G +L D     I  +   + I   L   
Sbjct: 33  FSVDFEYRYTGYNELHVRRMKEL--YNVDVKLGDKLSDYQTLQIDWLKAKSFIDKALA-G 89

Query: 141 NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
            T+  +       G+   +  +++  PI +R  E  G   F                K  
Sbjct: 90  ETFT-EYVYLGYSGSKQ-LYSEVSHSPILNRKNEVIGVSIF--SKDVTERKAIEDALKAS 145

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP--PHLRMKNKVSS--LTEYYAHKDDVLKT 256
           + K+  L +      ++  ++  +F   +         +N++    + ++   +   L  
Sbjct: 146 ELKYRGLVDNSPNAIAIYCDEKVVFVNNACFKLIGATTRNELIDKQVLDFIHPEFKELAA 205

Query: 257 EKYPLLTSEESSLPE-QEDFHTINLNQYTKKQYFGTLQNNSKESFEYL--SHRNHPSLSA 313
            +    +     LP   E    ++ +          ++ + K + + +            
Sbjct: 206 SRMKEASINHKVLPLINERLIKLDGSYVDVGVKSIPIEFDGKHAVQLIIHDLTELRQAEE 265

Query: 314 YFDEGENLTPETVDKCPIPFFV--YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
              E E L  +  +  P    +    +G+    N SFLL+ +    D I        L+D
Sbjct: 266 KIRETEILFSQAFNASPAAMSIANQKNGSYIAVNESFLLIAELHREDVIGKTPEELNLID 325

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
                   A         +               + +  + M  +   +           
Sbjct: 326 KDTRQKLKAQ-----LIENGILTDVEV--QAKSASGKPLVLMFSVQITELAGERC---IL 375

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDG--IAIINREGIILSTNRAVSKLFGYPV 489
               +  + +  ++ +     +       + D   I  ++  G  +  N   +K+ GY  
Sbjct: 376 STMQDITERKKIEQALRESEEKFKKAFMTSPDCLNINRLD-NGTYVLANEGFTKILGYTE 434

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
            +I+ +          P+  ++++  +                T E     +   I +L 
Sbjct: 435 NEIIGRTSLEMNIWLNPAERDNWIKILFEDRKVDNFVTQFRTKTGELIYALVSAAIIELD 494

Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579
                     DI++ K  +N L  +++   
Sbjct: 495 GIPHVLSLTRDITKQKLVENSLRSSEEKYR 524



 Score = 91.6 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 36/291 (12%), Positives = 94/291 (32%), Gaps = 33/291 (11%)

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIA 363
                 ++       E      VD  P    +Y    + + N +   L    + +++   
Sbjct: 131 DVTERKAIEDALKASELKYRGLVDNSPNAIAIYCDEKVVFVNNACFKLIGATTRNELIDK 190

Query: 364 GGLSTLLDAPKLSDNNAIKPV------------MLYRSDRTCIAASARLHTIQWNRENSL 411
             L  +    K    + +K               L + D + +    +   I+++ ++++
Sbjct: 191 QVLDFIHPEFKELAASRMKEASINHKVLPLINERLIKLDGSYVDVGVKSIPIEFDGKHAV 250

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-R 470
            +                      +  + R  + K+    +       A+   ++I N +
Sbjct: 251 QLIIH-------------------DLTELRQAEEKIRETEILFSQAFNASPAAMSIANQK 291

Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530
            G  ++ N +   +     ED++ K                   +++   +   +E    
Sbjct: 292 NGSYIAVNESFLLIAELHREDVIGKTPEELNLI-DKDTRQKLKAQLIENGILTDVEVQAK 350

Query: 531 GSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE 581
            ++ +  +L   + I +L    C   TM DI+E K+ +  L  +++  +K 
Sbjct: 351 SASGKPLVLMFSVQITELAGERCILSTMQDITERKKIEQALRESEEKFKKA 401



 Score = 73.5 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 45/304 (14%), Positives = 103/304 (33%), Gaps = 42/304 (13%)

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
               L          N+  E +  +    +  + +  +  ++   ++   +++ + + IA
Sbjct: 102 GSKQLYSEVSHSPILNRKNEVIGVSIFSKDVTERKAIEDALKASELKYRGLVDNSPNAIA 161

Query: 467 I-INREGIILSTNRAVSKLFG-YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
           I  +    ++  N A  KL G     +++ K    F+      +    + E         
Sbjct: 162 IYCDE--KVVFVNNACFKLIGATTRNELIDKQVLDFIHPEFKELAASRMKEASINHKVLP 219

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKES 582
           L    L    +   + + +    + F       L +HD++E +Q + K+   + +  +  
Sbjct: 220 LINERLIKL-DGSYVDVGVKSIPIEFDGKHAVQLIIHDLTELRQAEEKIRETEILFSQAF 278

Query: 583 SHKSDFLARVS------------HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           +      A +S            +E      + +  +E+ +    G           N I
Sbjct: 279 NASP---AAMSIANQKNGSYIAVNE------SFLLIAELHREDVIGKTPEE-----LNLI 324

Query: 631 DRSGNLVL--DIVND--LLDI---SKIESGKMNLHFEPVSLDEAVSE--AISLVQLYANE 681
           D+     L   ++ +  L D+   +K  SGK  +    V + E   E   +S +Q     
Sbjct: 325 DKDTRQKLKAQLIENGILTDVEVQAKSASGKPLVLMFSVQITELAGERCILSTMQDITER 384

Query: 682 KRIL 685
           K+I 
Sbjct: 385 KKIE 388


>gi|282900038|ref|ZP_06307997.1| Multi-sensor Signal Transduction Histidine Kinase
           [Cylindrospermopsis raciborskii CS-505]
 gi|281195070|gb|EFA70008.1| Multi-sensor Signal Transduction Histidine Kinase
           [Cylindrospermopsis raciborskii CS-505]
          Length = 663

 Score =  300 bits (768), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 80/261 (30%), Positives = 132/261 (50%), Gaps = 12/261 (4%)

Query: 559 HDISEWKQEKNKLSHAKKIAEKE--------SSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
             +++ KQ   +    + +A +E        S  +++FLA +SHE+ TPLT +IG S  +
Sbjct: 399 RKLTQEKQTLEQRVIERTMALREALLAAEAASRIRNEFLATISHELLTPLTYVIGMSSTL 458

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
                G L  PR  EY   I  SG  +LD++ND+LD+S+I++GK  L+    SL      
Sbjct: 459 LRWPLGELT-PRQREYLQTIHDSGERLLDMINDILDLSQIQAGKTVLNICEFSLTRLAEN 517

Query: 671 AISLVQLYANEKRILIRTSFA--NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
            +  +   +   ++ ++          +  AD   ++QI  N+L+NAI FTP GG + + 
Sbjct: 518 IVDSLLEKSTNAKVTLKLDVQVNPRHDQFSADPGRIEQIIWNLLTNAIKFTPQGGNVTLR 577

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                N  VI +V DTG+G+   +L    + F Q+  S     EGTG+GL L K +V+ +
Sbjct: 578 FWVEDN-TVIFQVEDTGIGIPEEKLPLVFEKFQQVDASYHRPYEGTGIGLALTKQIVELH 636

Query: 789 MGKFYIFSTPAKGTLIEIIFP 809
            G+  + ST   G++  +  P
Sbjct: 637 RGRIEVESTVGVGSIFTVWIP 657


>gi|261408700|ref|YP_003244941.1| multi-sensor signal transduction histidine kinase [Paenibacillus
           sp. Y412MC10]
 gi|261285163|gb|ACX67134.1| multi-sensor signal transduction histidine kinase [Paenibacillus
           sp. Y412MC10]
          Length = 605

 Score =  300 bits (768), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 79/452 (17%), Positives = 172/452 (38%), Gaps = 55/452 (12%)

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
           V    +              +               + ++  +         + + T++ 
Sbjct: 185 VSYRVAQGLTSPLEKITRVARRISRLEYDARVK-IHRKDEIGQLAQAINGMADSLQTQL- 242

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            R +      L S+L   + GI +++  G I+  NRA  K+ G   E I  K +    + 
Sbjct: 243 -RTIRDNEDLLQSVLNNMTGGIVLVSGAGQIILVNRAAEKMLGINAEVITGKSYRELKQH 301

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR-IIIKKLPFS----SCYSLTM 558
              + +         L  +    +        E ++ +  + + +              +
Sbjct: 302 YELTKLME-----EGLGSQADFHEERNVYYPVESIIRIDGVTMMQEEEQEPYRRGMLFLL 356

Query: 559 HDISEWK---QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
            D+S+ +   +                  +S+F+A VSHE++TPL A+ GF+E +     
Sbjct: 357 QDVSDIRRLER-----------------MRSEFVANVSHELKTPLAAVKGFAETLLGG-- 397

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
           G         +   I      +  ++ D+L++SKIES ++ + + P+ L         ++
Sbjct: 398 GVTDEKTSRSFLQIIYDESERLNRLIGDILELSKIESKRIQMDYSPIHLSAFFDTISEMM 457

Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH---- 731
           +  A +KRI +       +  +  D   ++QI +N+LSNAI +T  GG++ ++       
Sbjct: 458 RTVAEKKRIGLELDVPEEL-FMEGDEDKLRQIFMNLLSNAISYTQEGGRVKLTAREKHND 516

Query: 732 -TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-------RGEGTGLGLPLAKA 783
            ++++ V   V+D+G+G+   +L +  + F ++  ++                   + K 
Sbjct: 517 GSADDFVEFVVKDSGIGIPKKDLPRIFERFYRVDKARSRGSGGTGLGLS-------IVKH 569

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
           +VD + G   + S    G+   I  P+   +H
Sbjct: 570 LVDLHHGTIKVESELGIGSSFIIELPILQETH 601


>gi|167768191|ref|ZP_02440244.1| hypothetical protein CLOSS21_02747 [Clostridium sp. SS2/1]
 gi|167709715|gb|EDS20294.1| hypothetical protein CLOSS21_02747 [Clostridium sp. SS2/1]
 gi|291560213|emb|CBL39013.1| Signal transduction histidine kinase [butyrate-producing bacterium
           SSC/2]
          Length = 982

 Score =  300 bits (768), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 102/367 (27%), Positives = 168/367 (45%), Gaps = 12/367 (3%)

Query: 460 ATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEI 516
              D   +++ +       +  V KL G  +E I            ++       YL EI
Sbjct: 343 NVDDVFLMLDAKTYQADYVSPNVEKLLGITIEQIREDICILGELHSEDMKDSKKDYLKEI 402

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKK 576
              + ++   +     T E +      +  ++  +  Y L M D +  K+    LS A  
Sbjct: 403 QVHEQQEWDFECVHQKTGERRWFHSVAMGSEVNGNKKYILVMSDRTADKKMNQALSDAVY 462

Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
            AE  +  KS FL+ +SH+IRTP+ AIIGF+ +  +            +Y   I  S N 
Sbjct: 463 AAENANQAKSTFLSNMSHDIRTPMNAIIGFTTLAVSNID---NKKMVRDYLGKILSSSNH 519

Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS-FANNIP 695
           +L ++ND+LD+S+IESGK++L    VSL + + +  +++    + K++ +          
Sbjct: 520 LLSLINDILDMSRIESGKIHLEETEVSLSDVLHDLKTIISGQIHAKQLELYMDAMDVTNE 579

Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-----TSNEEVILRVRDTGVGMTN 750
            +  D   + QI LN+LSNAI FTP+GG I +            +   +RV+D G+GM+ 
Sbjct: 580 DVYCDKTRLNQILLNLLSNAIKFTPAGGMISVRLKQYPGTQRERQLYEIRVKDNGIGMSE 639

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             ++K   PF +  +S   R +GTGLG+ + K +VD   G   I +   KGT   +  PL
Sbjct: 640 DFVQKLFSPFERERSSTVSRTQGTGLGMAITKNIVDMMGGNIEIQTEQGKGTEFIVRLPL 699

Query: 811 YDTSHPH 817
              S  H
Sbjct: 700 RIQSKHH 706


>gi|82702621|ref|YP_412187.1| PAS/PAC sensor hybrid histidine kinase [Nitrosospira multiformis
           ATCC 25196]
 gi|82410686|gb|ABB74795.1| PAS/PAC sensor hybrid histidine kinase [Nitrosospira multiformis
           ATCC 25196]
          Length = 606

 Score =  300 bits (768), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 90/432 (20%), Positives = 169/432 (39%), Gaps = 20/432 (4%)

Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
            ARL   +   +  L +     +  +        + +E E  + R     +  E  +  +
Sbjct: 24  RARLRAERVLEQAKLDLQDKARQLDHSLTILRATSTVERERSELRKMPAPLYQEAYKRKA 83

Query: 457 ------ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
                 + E T   I     +G     N +  +  G  +  +L   +   +         
Sbjct: 84  ECRTCVVAEKTPLKIFTARIDGTKDYFNESWFEYTGVGLGKLLGWAWVDLIHIEDIEENL 143

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT--MHDISEWKQEK 568
               + L       +E     +T   +  S      +      +       DI E K + 
Sbjct: 144 KRWKQSLRTGESFWMENRIRQATGNYRWHSSCATPIRNAGGGIWMWVGYCMDIHETKMKT 203

Query: 569 NKL-------SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
            +L          +K AE+ +  K +F A +SHE+R PL AI+G+S++I     G + + 
Sbjct: 204 EELGRFLAKEREMRKDAERVNHSKDEFFAMLSHELRNPLNAILGWSQLILQ---GTMNSE 260

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
              +    I+R+  +   ++ DL ++S+I +GK+ L    + L       +      A  
Sbjct: 261 SVRKGIETIERNAKIQNKLIEDLFEMSRITAGKVTLELLRIDLSSLTEAVVDSAVPVAEA 320

Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
           K++ +R    + +  +LAD    +Q+  N+LSNAI FTP+ G++ I     +     ++V
Sbjct: 321 KKVRLRKIIDSEVGFVLADENRFQQVLWNLLSNAIKFTPAEGEVEIHVR-RAGSRAEVKV 379

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAK 800
           +D+G+G+    L      F Q  +    +  G GLGL + K +V  + G     S    K
Sbjct: 380 KDSGIGIKREFLPHVFDRFRQADSPASRQQIGLGLGLAIVKELVLLHRGTVIAESNGEGK 439

Query: 801 GTLIEIIFPLYD 812
           G++  +  PL  
Sbjct: 440 GSVFTVSLPLIQ 451



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/297 (11%), Positives = 80/297 (26%), Gaps = 15/297 (5%)

Query: 50  EQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVR-FTWNIDAHGYLKEISEELPKTIGN 108
           E+S                 +E           ++ FT  ID  G     +E   +  G 
Sbjct: 63  ERSELRKMPAPLYQEAYKRKAECRTCVVAEKTPLKIFTARID--GTKDYFNESWFEYTGV 120

Query: 109 YAFKMIGMRLCDVSDILHIDPNNHIGDL-LKRQNTWYGKTTLWPIEGTNLYVPIDLAALP 167
              K++G    D+  I  I+ N       L+   +++ +  +   + T  Y      A P
Sbjct: 121 GLGKLLGWAWVDLIHIEDIEENLKRWKQSLRTGESFWMENRI--RQATGNYRWHSSCATP 178

Query: 168 IYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ 227
           I +       +   G                R   K   + +  +  +  + E + + S 
Sbjct: 179 IRNAGGGI--WMWVGYCMDIHETKMKTEELGRFLAKEREMRKDAERVNHSKDEFFAMLSH 236

Query: 228 QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287
           +   P   +      L          + +E             + ++    +L + ++  
Sbjct: 237 ELRNPLNAI------LGWSQLILQGTMNSESVRKGIETIERNAKIQNKLIEDLFEMSRIT 290

Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYA 344
                    +     L+     S     +  +    + +D   + F +         
Sbjct: 291 AGKVTLELLRIDLSSLTEAVVDSAVPVAEAKKVRLRKIIDS-EVGFVLADENRFQQV 346


>gi|326797386|ref|YP_004315206.1| ATP-binding region ATPase domain protein [Marinomonas mediterranea
            MMB-1]
 gi|326548150|gb|ADZ93370.1| ATP-binding region ATPase domain protein [Marinomonas mediterranea
            MMB-1]
          Length = 2241

 Score =  300 bits (768), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 85/262 (32%), Positives = 134/262 (51%), Gaps = 11/262 (4%)

Query: 561  ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
            +++      +L+ AK +AE+ +  KS FLA +SHEIRTP+ AIIG S +          N
Sbjct: 1494 VTDRT---EELNVAKVLAEEANRAKSLFLATMSHEIRTPMNAIIGLSRLTLKTPL----N 1546

Query: 621  PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
                ++ + I  S   +L I+ND+LD SKIE+ KM L      L   +S  +++  L A 
Sbjct: 1547 LDQKDFMDKILESAEGLLGIINDILDYSKIEAHKMVLEQTRFELQSVMSRIVTICALKAK 1606

Query: 681  EKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNE--E 736
            EK + +     +++P +L  D   ++QI  N++SNAI FT  G   I +S   T     +
Sbjct: 1607 EKALELHVDIDSDVPALLLGDPLRLQQILTNLVSNAIKFTEKGFVGIRVSLEQTQEGTPQ 1666

Query: 737  VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
            V   V D+GVG+T     +  KPF Q   S   +  GTGLGL + + +V+   G+ ++ S
Sbjct: 1667 VRFDVTDSGVGLTQEHQRELFKPFTQADASITRKYGGTGLGLAICRQLVELMKGQIWVRS 1726

Query: 797  TPAKGTLIEIIFPLYDTSHPHD 818
               KG+      P++     +D
Sbjct: 1727 HLGKGSTFGFRIPVHSYQEDND 1748


>gi|228907208|ref|ZP_04071069.1| hypothetical protein bthur0013_13780 [Bacillus thuringiensis IBL
           200]
 gi|228852429|gb|EEM97222.1| hypothetical protein bthur0013_13780 [Bacillus thuringiensis IBL
           200]
          Length = 591

 Score =  300 bits (768), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 81/371 (21%), Positives = 154/371 (41%), Gaps = 39/371 (10%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            ++ E  QL SIL + +DG+  +N+EG ++  N           E+       + L +  
Sbjct: 249 ALQQEKEQLASILSSMADGVITLNQEGEVVVINPPAEHFLQVWQEEK-----EIELSKKL 303

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
           PS +      ++  + +Q +E        +   + L   +            + D++E +
Sbjct: 304 PSELVELFHLVVESEQQQVVEINLQ----KGNYVVLMTPLYNQTKIRGAVAVLRDMTEER 359

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + +                + DF+A VSHE+RTP+  + G+SE I +            E
Sbjct: 360 RLE--------------KMRQDFIANVSHELRTPMVMLQGYSEAILDDIVQT--KEEIDE 403

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           +   I      +  +VN+LLD++++ESG + LH   V +   V +     Q  A +K + 
Sbjct: 404 FVQIIYDESVRLGKLVNELLDLARMESGHVELHIGEVDIHPFVEKIGRKFQGIAKDKEVE 463

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +   F N I     D   ++Q+  N++ NAI  T +GG + +     +N  +I  V+D+G
Sbjct: 464 LTVDFRNPIEEYAFDADRMEQVLTNLIDNAIRHTNAGGHVTLVIDTKNNG-LIFEVQDSG 522

Query: 746 VGMTNYELEKAMKPFGQIPNSQQI-------RGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
            G+   ++      F +   ++          G        +AK +V  + GK  + S  
Sbjct: 523 AGIPEEDIPFLFDRFYKADKARTRGKKGGTGLGL------AIAKNIVQGHDGKISVSSVV 576

Query: 799 AKGTLIEIIFP 809
            +GT+  +  P
Sbjct: 577 GEGTIFSVYLP 587


>gi|170724253|ref|YP_001751941.1| multi-sensor signal transduction histidine kinase [Pseudomonas
           putida W619]
 gi|169762256|gb|ACA75572.1| multi-sensor signal transduction histidine kinase [Pseudomonas
           putida W619]
          Length = 592

 Score =  300 bits (768), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 111/550 (20%), Positives = 198/550 (36%), Gaps = 32/550 (5%)

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
           TS +S    QE+F  +      +          S     +LS        A     +   
Sbjct: 73  TSPQSLRALQENFQDLLDQGLAQGGERTGFSKASSNYQTFLSAYRQSPAPANSMGADQPL 132

Query: 323 PETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
               ++            + Y   S            +    GL+ L+            
Sbjct: 133 GAAFNQVRTDLIDSHKLAIDYITRS--EQLSRDRALLVSGVLGLTGLVVLML----GFFT 186

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
              + R     I A A+           + +      + NQ          E        
Sbjct: 187 AHNIARRFGQPIEALAKAADQLGQGNFDVTLPVSQAIEVNQLTRRFG-LMAEALRKHQET 245

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
           N  ++     +L ++L++  DG+ II+R+G +   N    +  G+    +          
Sbjct: 246 NVDELLAGQQRLQAVLDSIDDGLLIIDRQGHLEHLNPVAQRQLGWSNNRLGSPLAEALQR 305

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHD 560
                 +   L         + L        +E +LLS  +     P        + +HD
Sbjct: 306 PELEQQLRQVLRGGSLDRPPEDLSIEV---DEESRLLSYSLTPVSHPQGPILGAVMVLHD 362

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           ++E +  +                +S+F+ R SHE+RTP+T  +  +  +  +R      
Sbjct: 363 VTEQRAFE--------------RVRSEFVLRASHELRTPVTG-MHMAFGLLRERVKFPPQ 407

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
            R  +    I      +  ++NDLL+ S+ +SG   L   P ++DE +  A       A+
Sbjct: 408 ARENDLLETIGEEMQRLTQLINDLLNFSRYQSGLQKLELAPCAIDELLERAQVRFSEQAS 467

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
            K+I +  +    +PRI AD+  + ++  N+L NAI  T SGG+I +       E VI+ 
Sbjct: 468 VKQIELIKALEPPLPRIQADIAQLDRVLDNLLHNAIRHTGSGGRIRLH-ARRHAERVIIS 526

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V D G G+   +  +  +PF Q+      +  G GLGL L K +V  + G+  +FS P +
Sbjct: 527 VEDNGEGIAYGQQGRIFEPFVQV----GRKKGGAGLGLALCKEIVQLHGGRMGVFSRPGQ 582

Query: 801 GTLIEIIFPL 810
           GT   +  P+
Sbjct: 583 GTQFYMALPV 592



 Score = 38.5 bits (88), Expect = 5.2,   Method: Composition-based stats.
 Identities = 24/271 (8%), Positives = 73/271 (26%), Gaps = 13/271 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY-GKT 147
           ID  G+L+ ++    + +G    + +G  L +      ++    +  +L+  +     + 
Sbjct: 271 IDRQGHLEHLNPVAQRQLGWSNNR-LGSPLAEALQRPELEQ--QLRQVLRGGSLDRPPED 327

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
               ++  +    +  +  P+        G     ++H          +  R +      
Sbjct: 328 LSIEVDEESR--LLSYSLTPVSHPQGPILGA--VMVLHDVTEQRAFERV--RSEFVLRAS 381

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
           HE+ +   +     + +  ++   P    +N +         +   L  +       +  
Sbjct: 382 HEL-RTPVTGMHMAFGLLRERVKFPPQARENDLLETIGEEMQRLTQLINDLLNFSRYQSG 440

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
               +     I+      +  F    +  +           P + A   + + +    + 
Sbjct: 441 LQKLELAPCAIDELLERAQVRFSEQASVKQIELIKALEPPLPRIQADIAQLDRVLDNLLH 500

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVD 358
                    S G +                D
Sbjct: 501 NA--IRHTGSGGRIRLHARRHAERVIISVED 529


>gi|6689353|emb|CAB65452.1| VicK protein [Streptococcus pyogenes]
          Length = 452

 Score =  300 bits (768), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 91/406 (22%), Positives = 166/406 (40%), Gaps = 36/406 (8%)

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDT-RINKRKMEIEVMQLCSILEATSDGIAIINREG 472
            +          E M  +    +  D  R+    +  E  +L SIL   SDG+   +R G
Sbjct: 57  RYTDIIDEKADIELMELSDQLNDLSDVFRLTHENLAQEKNRLASILAYMSDGVLATDRSG 116

Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
            I+  N    K      E+ L+K  T  LE +T       +         +T        
Sbjct: 117 KIIMINETARKQLNLSKEEALKKNITDLLEGDTSYTYRDLV--------SKTPVVTVNSR 168

Query: 533 TKEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
               + +SLR+        S +     + +HD +E ++E+ +                 F
Sbjct: 169 NDMGEFVSLRLRFALNRRESGFISGLVVVLHDTTEQEKEERERRL--------------F 214

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
           ++ VSHE+RTPLT++  + E +     G L       +        N ++ +++DLL++S
Sbjct: 215 VSNVSHELRTPLTSVKSYLEAL---DEGALKEDIAPSFIKVSLDETNRMMRMISDLLNLS 271

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR-----ILIRTSFANNIPRILADLRS 703
           +I++    L  E  +    ++  ++   L  N+         I   +      I  D   
Sbjct: 272 RIDNQVTQLAVEMTNFTAFITSILNRFDLVKNQHTGTGKVYEIVRDYPITSVWIEIDNDK 331

Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
           + Q+  NIL+NAI ++P GG+I +    T   ++I+ + D G+G+   +L      F ++
Sbjct: 332 MTQVIENILNNAIKYSPDGGKITVRMKTTDT-QLIISISDQGLGIPKTDLPLIFDRFYRV 390

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             ++     GTGLGL +AK ++  + G  +  S   KG+   I+ P
Sbjct: 391 DKARSRAQGGTGLGLAIAKEIIKQHHGFIWAKSDYGKGSTFTIVLP 436


>gi|326790240|ref|YP_004308061.1| multi-sensor signal transduction histidine kinase [Clostridium
           lentocellum DSM 5427]
 gi|326541004|gb|ADZ82863.1| multi-sensor signal transduction histidine kinase [Clostridium
           lentocellum DSM 5427]
          Length = 465

 Score =  300 bits (767), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 86/405 (21%), Positives = 169/405 (41%), Gaps = 33/405 (8%)

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
              + +  +     E+           G E      +     +  +  +L S+  +  +G
Sbjct: 88  KEDQYTHQLRDYDIEELQNLAHAFDYMGDELSGTIRK-----LRHQKAKLESMFSSLEEG 142

Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
           I +I+++G I  TN    KL G           T  L +         +TE L  +  Q 
Sbjct: 143 IIVIDKKGYIDETNELARKLLGLKGNIPNNCHITHLLREEQ---FVKLVTEGLKTNKMQV 199

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
           +E        E  +    + + +      Y L + D+++ +  +                
Sbjct: 200 IE----LKIGEYIVYITMVAVGRSGKVYEYLLLIKDVTQLRGLEE--------------M 241

Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI-EYANYIDRSGNLVLDIVND 643
           K  F++ VSHE++TPLT+I GF E ++    G + N      + N ID     +  ++ D
Sbjct: 242 KYQFVSNVSHELKTPLTSIQGFVETLQ---AGAIENKEVAYRFLNIIDIETKRLYRLIQD 298

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703
           +L +S+IE+      +  V +   +   +SL+Q  A++K + I  +   ++         
Sbjct: 299 ILLLSEIEN-MDKQEYGDVKVASVIENCMSLLQEQADKKSVKIVFNEEQSLVIKNMSEDH 357

Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
           + Q+ +N+L NA+ +T +G  II  TT  ++++ I+ +RD+G+G+    +    + F ++
Sbjct: 358 LTQMMMNLLGNAVRYTDNGAIII--TTQENSKQQIITIRDSGIGIPEESIPHIFERFYRV 415

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
              +  +  GTGLGL + K +      K  + S   +GT   +I 
Sbjct: 416 DKGRSRQSGGTGLGLSIVKHIAKLYEIKIEVSSELGEGTCFRLIL 460


>gi|259907954|ref|YP_002648310.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Erwinia pyrifoliae Ep1/96]
 gi|224963576|emb|CAX55066.1| Sensor kinase protein RcsC [Erwinia pyrifoliae Ep1/96]
 gi|283477834|emb|CAY73750.1| Two component sensor kinase/response regulator protein RcsC
           [Erwinia pyrifoliae DSM 12163]
          Length = 992

 Score =  300 bits (767), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 94/378 (24%), Positives = 170/378 (44%), Gaps = 29/378 (7%)

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKP 496
           +    N  ++E +      I+ +   GI I+   +G  + +N                  
Sbjct: 385 LPAEENAYRLEEQEQFNRKIVASAPVGICILRTSDGTNILSNELA-------------HN 431

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556
           +   L Q         LTE++       ++      T     L +  +  +    +    
Sbjct: 432 YLTLLTQEDRL----RLTEMICGQQVNFVD----VLTGSNTNLQISFVHSRYRNENVAIC 483

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            + D+S   + +  L    + AE+ S  KS FLA VSHE+RTPL  IIG  +++K +   
Sbjct: 484 VLVDVSARVKMEQSLHEIAQEAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLKTKALP 543

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
              +         ++ S +L+L I++D+LD SKIES ++ +     S  E ++   +   
Sbjct: 544 AGADS----LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVIAHITANYL 599

Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
               +KR+ +     +++P  L  D   ++Q+  N+L+NAI FT +GG  II   +   +
Sbjct: 600 AMVVKKRLTLWCFIDSDVPVALDGDPMRLQQVISNLLNNAIKFTHTGG--IILQAYVKGD 657

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            +  RVRD+GVG+   E+ +   PF Q+ +  Q   +GTGLGL + + +++   G   + 
Sbjct: 658 YLAFRVRDSGVGIPAKEITRLFDPFFQVGSGVQRHFQGTGLGLAICEKLMNMMDGDIEVE 717

Query: 796 STPAKGTLIEIIFPLYDT 813
           S P  G+   +  PLY++
Sbjct: 718 SEPGMGSQFIVRIPLYNS 735


>gi|170745452|ref|YP_001766909.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
 gi|170659053|gb|ACB28107.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 916

 Score =  300 bits (767), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 97/765 (12%), Positives = 213/765 (27%), Gaps = 62/765 (8%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWY---- 144
                    +    + +      + G  + +           + + ++ +          
Sbjct: 46  GPEHRFTLTNAAYQRMVDGR--DVAGRTVAEALPEAAAQGYVDLLDEVFRSGRAHRATGA 103

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
                    G       D    P+   +   +G   F   H            +  + ++
Sbjct: 104 RLDLQPDPGGPATERYFDFVYQPVAGADGRVAGI--FVEGHDVTERTRAEVALRENEARY 161

Query: 205 SHLHEIKK-----GHSSVEKEKYDIFSQQS--PPPHLRMKNKVSSLTEYYAHKDDVLKTE 257
             L E  +          E      +      P    +    V+         +      
Sbjct: 162 RTLFESIEVGFCIIEIRFEGACAVDYRIVEANPAFVRQTGADVAGKWVSEFAPNLERHWF 221

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL--SHRNHPSLSAYF 315
                 +        E  H   +             + +                +    
Sbjct: 222 DTYGRVALTGEPAHFE--HFAEVFGRWFDVRALRTGDAAANRVAVFFSDITERRRVEERA 279

Query: 316 DEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
           + GE       D  P+   F+ +     +AN ++     +     I        L     
Sbjct: 280 EAGERELRLIADALPVLIAFIGADHVYRFANEAYDDWF-FVPAGQIVGRDVRDLL----G 334

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
               +A +P +        +                         + +        +   
Sbjct: 335 PDAYSARRPFIDRALGGEPVTFEMD---WPHRDGRHRVAEIRYLPRRDAGGRVDGFHVFV 391

Query: 435 PEDVDTRINKRKME----IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490
            +       +  +         +   I +A+SD + + + +G  +S N A  +  G+   
Sbjct: 392 QDVTVRAQTEADLARQVAARTAERDQIWQASSDLLCVASLDGYFVSLNPAWPRTLGWTDA 451

Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
           ++  +PF  F+  +  +        +   + +  L        K+   L L         
Sbjct: 452 EMKARPFLDFVHPDDVAATVSAAGGLARGEAQ--LTFENRYRCKDGSYLWLSWNAVP--R 507

Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKES--SHKSDFLARVSHEIRTPLTAIIGFSE 608
                 ++ D++E K++   L+  ++   +             ++H+    L  I G  E
Sbjct: 508 DGLIYSSVRDVTEIKRQAEALARTEEALRQSQKMEAVGQLTGGLAHDFNNLLAGISGSLE 567

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
            +   R           Y      +      + + LL  S+    +  L  +P +++  V
Sbjct: 568 -LMQTRMSQGRMGDLERYMTVAQGAAKRAAALTHRLLAFSR----RQTLDPKPTNVNRLV 622

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
            +   LV+       I +     + +   L D   ++   LN+  NA    P GG+I I 
Sbjct: 623 KDMEELVR-RTVGPSIHLEVVGLSGLWPALIDPGQLENALLNLCINARDAMPDGGRITIE 681

Query: 729 TT-------------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T               +  + + + V DTG GM+   ++K  +PF     +    GEGTG
Sbjct: 682 TANKWIDEAGGRQHDLSPGQYLSVCVTDTGTGMSADLVDKVFEPFFTTKPT----GEGTG 737

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820
           LGL +       + G+  I+S   +GT + +  P +      D +
Sbjct: 738 LGLSMVYGFARQSGGQVRIYSEVGEGTTVCLYLPRHYGEADEDEV 782



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 52/428 (12%), Positives = 99/428 (23%), Gaps = 35/428 (8%)

Query: 184 VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL 243
           V   R  +   A        F  L    +   ++    Y             +   +   
Sbjct: 20  VRRLRGHSASLAQMFEQAPSFVALLSGPEHRFTLTNAAYQRMVDGRDVAGRTVAEALPEA 79

Query: 244 TEY--YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF- 300
                    D+V ++ +    T     L                 Q            F 
Sbjct: 80  AAQGYVDLLDEVFRSGRAHRATGARLDLQPDPGGPATERYFDFVYQPVAGADGRVAGIFV 139

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS---------HGNLFYANPSFLLL 351
           E               E E       +   + F +              +  ANP+F+  
Sbjct: 140 EGHDVTERTRAEVALRENEARYRTLFESIEVGFCIIEIRFEGACAVDYRIVEANPAFVRQ 199

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411
           T            G      AP L  +       +  +                      
Sbjct: 200 TGAD-------VAGKWVSEFAPNLERHWFDTYGRVALT-GEPAHFEHFAEVFGR------ 245

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471
              F                    +  + R  + + E    +L  I +A    IA I  +
Sbjct: 246 --WFDVRALRTGDAAANRVAVFFSDITERRRVEERAEAGERELRLIADALPVLIAFIGAD 303

Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
            +    N A    F  P   I+ +     L  +  S    ++   L      T E     
Sbjct: 304 HVYRFANEAYDDWFFVPAGQIVGRDVRDLLGPDAYSARRPFIDRAL-GGEPVTFEMDWPH 362

Query: 532 STKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHA----KKIAEKESSHK 585
                ++  +R + ++        + + + D++   Q +  L+          ++     
Sbjct: 363 RDGRHRVAEIRYLPRRDAGGRVDGFHVFVQDVTVRAQTEADLARQVAARTAERDQIWQAS 422

Query: 586 SDFLARVS 593
           SD L   S
Sbjct: 423 SDLLCVAS 430



 Score = 67.7 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 58/527 (11%), Positives = 130/527 (24%), Gaps = 45/527 (8%)

Query: 75  VFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG 134
                   V   + I A    +  +E         A +++G  + D+             
Sbjct: 287 RLIADALPVLIAF-IGADHVYRFANEAYDDWFFVPAGQIVGRDVRDLLGPDAYSARRPFI 345

Query: 135 DLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR 194
           D          +      +G +     ++  LP         GF  F  V    V     
Sbjct: 346 DRALGGEPVTFEMDWPHRDGRHRVA--EIRYLPRRDAGGRVDGFHVF--VQDVTVRAQTE 401

Query: 195 ALGKRLDKKFSHLHE----IKKGHSSVEKEKYDIFSQQSPPP----HLRMKNKVSSLTEY 246
           A   R     +   +           V        S     P        + K     ++
Sbjct: 402 ADLARQVAARTAERDQIWQASSDLLCVASLDGYFVSLNPAWPRTLGWTDAEMKARPFLDF 461

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
               D          L   E+ L  +  +   + +                 S   ++  
Sbjct: 462 VHPDDVAATVSAAGGLARGEAQLTFENRYRCKDGSYLWLSWNAVPRDGLIYSSVRDVTEI 521

Query: 307 NHPSLSAYFDEGENLTPETVDKCP--IPFFVYSHGNLFYANPSFLLLTKYK-SVDDIEIA 363
              + +    E      + ++          +   NL       L L + + S   +   
Sbjct: 522 KRQAEALARTEEALRQSQKMEAVGQLTGGLAHDFNNLLAGISGSLELMQTRMSQGRMGDL 581

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
               T+              ++ +   +T       ++ +  + E             + 
Sbjct: 582 ERYMTVAQGAAKRAAALTHRLLAFSRRQTLDPKPTNVNRLVKDMEE----LVRRTVGPSI 637

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL---EATSDGIAIINREGIIL--STN 478
             E +  +G+ P  +D    +  +      L   +   +A  DG       G I   + N
Sbjct: 638 HLEVVGLSGLWPALIDPGQLENAL------LNLCINARDAMPDG-------GRITIETAN 684

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
           + + +  G   +    +  +V +      +    + ++            T   T E   
Sbjct: 685 KWIDEAGGRQHDLSPGQYLSVCVTDTGTGMSADLVDKVFEP-------FFTTKPTGEGTG 737

Query: 539 LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
           L L ++      S        ++ E       L      A+++   +
Sbjct: 738 LGLSMVYGFARQSGGQVRIYSEVGEGTTVCLYLPRHYGEADEDEVAR 784



 Score = 55.0 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/152 (13%), Positives = 42/152 (27%), Gaps = 18/152 (11%)

Query: 444 KRKMEIEVMQLC-------SILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRK 495
           + ++E EV +L         + E     +A++   E     TN A  ++      D+  +
Sbjct: 13  REELEAEVRRLRGHSASLAQMFEQAPSFVALLSGPEHRFTLTNAAYQRM--VDGRDVAGR 70

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE------EKLLSLRIIIKKLP 549
                L +         L E+             L    +      E+            
Sbjct: 71  TVAEALPEAAAQGYVDLLDEVFRSGRAHRATGARLDLQPDPGGPATERYFDFVYQPVAGA 130

Query: 550 FSS--CYSLTMHDISEWKQEKNKLSHAKKIAE 579
                   +  HD++E  + +  L   +    
Sbjct: 131 DGRVAGIFVEGHDVTERTRAEVALRENEARYR 162


>gi|83309724|ref|YP_419988.1| PAS/PAC domain-containing protein [Magnetospirillum magneticum
           AMB-1]
 gi|82944565|dbj|BAE49429.1| PAS/PAC domain [Magnetospirillum magneticum AMB-1]
          Length = 844

 Score =  300 bits (767), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 124/744 (16%), Positives = 253/744 (34%), Gaps = 49/744 (6%)

Query: 98  ISEELPKTIGN--YAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGT 155
            S  L   +G            L   +       ++    L +    +          G 
Sbjct: 114 CSRRLAVLLGLFGGTESAFMDVLESFAAADAAQLDSAARRLREEGQGFE-LELRLRDGGR 172

Query: 156 NLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR----LDKKFSHLHEIK 211
            +      A  P        +       V          A          ++   L  + 
Sbjct: 173 RVRAVGVRACGP---EGAALADLVWMHDVTEGAAFEAELASRLAGLVVERERIEGLLGVL 229

Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE--YYAHKDDVLKTEKYPLLTSEESSL 269
              + V  +   +                 +          D  ++  +     +  +  
Sbjct: 230 PIPAWVRDDDLSLLHVNRAYARAVDVASPLAAVAGQIELASDGSVREARALAARARAAGE 289

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKE----SFEYLSHRNHPSLSAYFDEGENLTPET 325
           P  E FH +   Q    +               +   L       L        +   + 
Sbjct: 290 PRSESFHLVLGGQRRFTEITEAPFEAEDGGLLTAGYALDLTRVEELQQELARHASAHAQV 349

Query: 326 VDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
           ++       ++S    L + N +F  L + ++ + +        +LD+ +          
Sbjct: 350 LEHLATAIAIFSTDTRLTFFNTAFTRLWRLEA-EWLAAQPTYGAVLDSLRERRLLPEVAD 408

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN-MPQNGIEPEDVDTRIN 443
                +        R  ++    E  L +      +                +  DT   
Sbjct: 409 YRAYKEDEL----KRFISLIDAAETLLHLPDGRTLRRMIAAHPYGGLIFTYEDVTDTLAL 464

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
           +R     +      L+   +G+A+   +G +   N A ++++      +  +P    L +
Sbjct: 465 ERSFNTALAVQRETLDHLHEGVAVFKGDGRLRLFNPAYARIWNLAPSMLESEPHLNELVE 524

Query: 504 NTPS-------------VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
                             M   L  + +    Q+     L    ++ ++    +      
Sbjct: 525 AHRPYFEGGAERASVWPEMRERLMALFNTRAPQSGRVERL----DDSIVDFASVPLP--- 577

Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
                LT  D+++  + +  L    +        KS+F+A VS E+R PLT +IGFSE++
Sbjct: 578 DGAMLLTWLDVTDSARVERALRERNEALAAADLLKSEFIANVSAEVRKPLTTVIGFSEML 637

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
             + FG L N R  EYA  I  +G  +  +++D+LD++ IE+G+M L  + V +   +S 
Sbjct: 638 AAEYFGKL-NKRQHEYARGITEAGQGLQALISDILDLAAIEAGQMALELDTVDVHPMLSG 696

Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
            + LV+    EK++ +      +I  I+AD R ++Q+  N+L NA+  TPSGG++ +   
Sbjct: 697 VLGLVRERVREKKVTLDFDCPLDIGWIVADERRLRQVLFNLLGNALKRTPSGGKVSVRAE 756

Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN----SQQIRGEGTGLGLPLAKAMVD 786
              + E+ L + DTG G+++ + E+    F               + +G+GL L +  VD
Sbjct: 757 RRPS-ELALTISDTGTGLSDEQRERLFGGFATGGRREALPAGRADDDSGIGLALVQRFVD 815

Query: 787 ANMGKFYIFSTPAKGTLIEIIFPL 810
            + G+  + S P +GT++ +  P+
Sbjct: 816 LHGGRVELASAPGEGTVVTVRLPV 839



 Score = 60.0 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/384 (10%), Positives = 108/384 (28%), Gaps = 24/384 (6%)

Query: 87  WNIDAHGYLKEISEELPKTIG--NYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144
           W  D    L  ++    + +   +    + G    +++    +     +    +      
Sbjct: 234 WVRDDDLSLLHVNRAYARAVDVASPLAAVAGQ--IELASDGSVREARALAARARAAGEPR 291

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            ++    + G       ++   P  + +    G    G         + +    R     
Sbjct: 292 SESFHLVLGG--QRRFTEITEAPFEAEDG---GLLTAGYALDLTRVEELQQELARHASAH 346

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHL-RMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
           + + E      ++      +    +    L R++ +  +    Y    D L+  +     
Sbjct: 347 AQVLEHLATAIAIFSTDTRLTFFNTAFTRLWRLEAEWLAAQPTYGAVLDSLRERRLLPEV 406

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE----------SFEYLSHRNHPSLSA 313
           ++  +  E E    I+L    +           +            F Y    +  +L  
Sbjct: 407 ADYRAYKEDELKRFISLIDAAETLLHLPDGRTLRRMIAAHPYGGLIFTYEDVTDTLALER 466

Query: 314 YFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
            F+    +  ET+D       V+   G L   NP++  +        +E    L+ L++A
Sbjct: 467 SFNTALAVQRETLDHLHEGVAVFKGDGRLRLFNPAYARIWNLAP-SMLESEPHLNELVEA 525

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
            +       +   ++   R  + A       Q        +     + A+    +     
Sbjct: 526 HRPYFEGGAERASVWPEMRERLMALFNTRAPQS--GRVERLDDSIVDFASVPLPDGAMLL 583

Query: 433 IEPEDVDTRINKRKMEIEVMQLCS 456
              +  D+   +R +      L +
Sbjct: 584 TWLDVTDSARVERALRERNEALAA 607


>gi|301059923|ref|ZP_07200807.1| PAS domain S-box protein [delta proteobacterium NaphS2]
 gi|300445978|gb|EFK09859.1| PAS domain S-box protein [delta proteobacterium NaphS2]
          Length = 762

 Score =  300 bits (767), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 87/508 (17%), Positives = 184/508 (36%), Gaps = 49/508 (9%)

Query: 324 ETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
           E  +  P    V   +  L   N  F      +S D                   +   +
Sbjct: 286 ELFESAPCYITVQDRNFRLLKYNREFAEQFDARSGD----------YCYQVYKGRSERCE 335

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
              +  +        +    I  +   S  M        N   E +    +  +    + 
Sbjct: 336 ICPVQDTFDDGQPHHSEEEGINRDGTKSCWM-VRTSPVKNNAGEVIAAVEMSLDVTAMKH 394

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
            + +++    +   I     + + ++++ +  IL  N  V+ ++GYP E++L   F  F 
Sbjct: 395 LESEVKKSEEKYRIIFSTIPNPVFVLDQTKLNILDCNDNVTSVYGYPKEEVLNTSFLDFF 454

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP--FSSCYSLTMH 559
                      +          T+        K+   + + I +        + + +T+ 
Sbjct: 455 GPRERRQYESRMKA-------STVIDSAKHYAKDGSAIYVNIRVSSTEFSGEAVFLVTIS 507

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF--GP 617
           DI+E    + +L  A K+A        +    V+HE+  PL+ I      +  +    G 
Sbjct: 508 DITERLLAEQQLIQASKMAT-----LGEMSTGVAHELNQPLSVIKTAGSFLHKKALKGGK 562

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
           + +         I+   +    I+N + +  +    K ++  E V L++A++ A+ + + 
Sbjct: 563 IDDDTLKTLTAEINSQVDRASKIINHMREFGR----KSDVVKEEVQLNDALTRALEIFRQ 618

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG-----------GQII 726
               + I +      ++P ++AD   ++Q+ +N+L NA     +             +I 
Sbjct: 619 QLKLREIKVALDLQQHLPTVMADSNRLEQVFINLLINARDAIEAKWWGNVDPKDKAKKIT 678

Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
           + T    N   I+ + DTG+G++   ++K  +PF          G+GTGLGL ++  +V 
Sbjct: 679 LRTRKK-NSFAIVEIADTGIGISKAVIDKIFEPFFTTKQ----VGKGTGLGLSISYGIVR 733

Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
              G   + S   KG+   I FP+  + 
Sbjct: 734 DYDGTISVESEEDKGSTFTIRFPVSGSD 761



 Score = 51.2 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 13/140 (9%), Positives = 44/140 (31%), Gaps = 6/140 (4%)

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
             + ++  +  +   + E+    I + +R   +L  NR  ++ F     D   +      
Sbjct: 272 EKQDELNKQKTEYWELFESAPCYITVQDRNFRLLKYNREFAEQFDARSGDYCYQ----VY 327

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH-- 559
           +  +       + +          E+  +     +    +R    K       +      
Sbjct: 328 KGRSERCEICPVQDTFDDGQPHHSEEEGINRDGTKSCWMVRTSPVKNNAGEVIAAVEMSL 387

Query: 560 DISEWKQEKNKLSHAKKIAE 579
           D++  K  ++++  +++   
Sbjct: 388 DVTAMKHLESEVKKSEEKYR 407



 Score = 42.7 bits (99), Expect = 0.27,   Method: Composition-based stats.
 Identities = 26/246 (10%), Positives = 67/246 (27%), Gaps = 19/246 (7%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEG 154
           + + ++ +    G    +++     D                    +T       +  +G
Sbjct: 427 ILDCNDNVTSVYGYPKEEVLNTSFLDFFGPRERRQYESRMKA----STVIDSAKHYAKDG 482

Query: 155 TNLYVPIDLAALPIYSRNREFSGFRGFGI-VHVNRVDNDPRALG------KRLDKKFSHL 207
           + +YV I +++        EFSG   F + +                     L +  + +
Sbjct: 483 SAIYVNIRVSST-------EFSGEAVFLVTISDITERLLAEQQLIQASKMATLGEMSTGV 535

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
                   SV K       +++        + + +LT     + D        +      
Sbjct: 536 AHELNQPLSVIKTAGSFLHKKALKGGKIDDDTLKTLTAEINSQVDRASKIINHMREFGRK 595

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
           S   +E+   +N       + F       +        ++ P++ A  +  E +    + 
Sbjct: 596 SDVVKEEVQ-LNDALTRALEIFRQQLKLREIKVALDLQQHLPTVMADSNRLEQVFINLLI 654

Query: 328 KCPIPF 333
                 
Sbjct: 655 NARDAI 660


>gi|254563591|ref|YP_003070686.1| sensor hybrid histidine kinase with multiple PAS/PAC and response
           regulator receiver domains [Methylobacterium extorquens
           DM4]
 gi|254270869|emb|CAX26874.1| putative sensor hybrid histidine kinase with multiple PAS/PAC and
           response regulator receiver domains [Methylobacterium
           extorquens DM4]
          Length = 1092

 Score =  300 bits (767), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 102/777 (13%), Positives = 212/777 (27%), Gaps = 73/777 (9%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYG--- 145
                    +    + I +    ++G  + +    +        + ++     T      
Sbjct: 191 GPDHAFAFANAAYRQLIAHR--DVLGRPVREALPEIEGQGFFELLDEVFSSGRTHTAHGA 248

Query: 146 -KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
             T L    G      +D    P+       +G   F             A     + +F
Sbjct: 249 PVTILRVPGGVPERRFLDFVYQPMRDAAGTITGV--FVDGSDVTERITGNAALAESEARF 306

Query: 205 SHLHEIKKGHSSVEKEKY--DIFSQQSPPPHLRMKNKVSSLTEYYA-HKDDVLKTEKYPL 261
             + +       V          +++      + + +   L    A H DD   +    L
Sbjct: 307 RTMADDAPVMMWVTGPDGACQYLNRRWYDFTGQNEAQALGLGWLEAVHPDDRGWSGDTFL 366

Query: 262 LT-SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE----SFEYLSHRNHPSLSAYFD 316
              +       +      +                           +      +      
Sbjct: 367 RANARHEGFSLEYRLRRRDGVYRWAIDTASPRFAADGSFLGYIGSVVDIEERRAAELALA 426

Query: 317 EGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
           E E      V+   I  + +       +  P    +       D+ +      L      
Sbjct: 427 ESEERLRLAVESGEIGLWDFDPRAGTLFWPPRIKAMFGLAPDADVTLDDFADGLHPD--- 483

Query: 376 SDNNAIKPVMLYRSDRTCIAA-SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
            D   +        D    A        I         +        +     +   G  
Sbjct: 484 -DRARVTAAFAAALDPVARAFYDEEFRAIGRADGTVRWVAAKGRGVFDAEGRCLRGVGSA 542

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
            +    +  + ++     +L ++L+  +  I +++        NRA  +L GY +++   
Sbjct: 543 IDITARKATEERLVEATRRLDAVLDNATQAIFMMDERQHCAYMNRAAERLTGYSLDETHG 602

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI---TLGSTKEEKLLSLRIIIKKLPFS 551
           K     +    P    + L E           +     +   ++     +      +   
Sbjct: 603 KALHDVVHHTRPDGSPYPLHECPIDQAFPENNQEQGQEIFVHRDGSFYPVAFTASPIRDE 662

Query: 552 SCY----SLTMHDISEWKQEKNKLSHAKKIAEKESSHKS--------------------D 587
                   +   +I    + K +L       E++ + ++                     
Sbjct: 663 GGMPIGTVIEARNIEGELRAKAQLEAFNASLEQQVAARTAELMRTEEALRQSQKMEAVGQ 722

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
               ++H+    LT I G  E +   R           Y N    +      + + LL  
Sbjct: 723 LTGGLAHDFNNLLTGITGSLE-LLQTRLAQGRITEIDRYVNAAQGAAKRAAALTHRLLAF 781

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707
           S+    +  L  +P  ++  V     L++       I +    A  +  +L D   ++  
Sbjct: 782 SR----RQTLDPKPTDVNRLVMGMEDLLRRTI-GPSITLEVVAAGGLWSVLVDPSQLENA 836

Query: 708 ALNILSNAIHFTPSGGQIIISTT-------------HTSNEEVILRVRDTGVGMTNYELE 754
            LN+  NA    P GG+I I T                  + + L V D+G GM+   + 
Sbjct: 837 LLNLCINARDAMPDGGRITIETANKWLDDRGAKERDLDPGQYLSLCVTDSGTGMSPDVIA 896

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
           KA  PF          G+GTGLGL +    V  + G+  I+S   +GT + +  P +
Sbjct: 897 KAFDPFFTTKP----IGQGTGLGLSMIYGFVRQSGGQVRIYSEVGQGTTMCLYLPRH 949



 Score =  144 bits (364), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 48/532 (9%), Positives = 130/532 (24%), Gaps = 33/532 (6%)

Query: 82  TVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN 141
            +   W      ++   ++      G    + +G    +V   +       +      + 
Sbjct: 57  PMLIVW---GEAHVTLYNDGYAPMCGARHPRALGQPFDEVWHDIWDQVGPILSRAYAGEA 113

Query: 142 TW-YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
           T            G            P+   +   +G   F                   
Sbjct: 114 THMDDIALTMHRNGYPEETHFAFGYTPVRIEDGTVAGM--FCACSETTASVRAGRQMHAE 171

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
            ++F+ L E      +V       F+  +      + ++            ++     + 
Sbjct: 172 RERFARLFEQSPSFVAVLDGPDHAFAFANAAYRQLIAHRDVLGRPVREALPEIEGQGFFE 231

Query: 261 LLTS------EESSLPEQEDFHTINL---NQYTKKQYFGTLQNNSKESFEYL----SHRN 307
           LL          ++         +      +      +  +++ +               
Sbjct: 232 LLDEVFSSGRTHTAHGAPVTILRVPGGVPERRFLDFVYQPMRDAAGTITGVFVDGSDVTE 291

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
             + +A   E E       D  P+  +V    G   Y N  +   T       +   G L
Sbjct: 292 RITGNAALAESEARFRTMADDAPVMMWVTGPDGACQYLNRRWYDFTGQNEAQAL-GLGWL 350

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
             +    +    +               +   RL   +               +      
Sbjct: 351 EAVHPDDRGWSGDTFLRANARH---EGFSLEYRL---RRRDGVYRWAIDTASPRFAADGS 404

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
            +   G   +  + R  +  +     +L   +E+   G+   +     L     +  +FG
Sbjct: 405 FLGYIGSVVDIEERRAAELALAESEERLRLAVESGEIGLWDFDPRAGTLFWPPRIKAMFG 464

Query: 487 YPVE-DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS-TKEEKLLSLRII 544
              + D+    F   L  +  + +       L    R   ++        +  +  +   
Sbjct: 465 LAPDADVTLDDFADGLHPDDRARVTAAFAAALDPVARAFYDEEFRAIGRADGTVRWVAAK 524

Query: 545 IKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
            + +  +         +  DI+  K  + +L  A +  +    + +  +  +
Sbjct: 525 GRGVFDAEGRCLRGVGSAIDITARKATEERLVEATRRLDAVLDNATQAIFMM 576


>gi|229104177|ref|ZP_04234849.1| hypothetical protein bcere0019_33250 [Bacillus cereus Rock3-28]
 gi|228679194|gb|EEL33399.1| hypothetical protein bcere0019_33250 [Bacillus cereus Rock3-28]
          Length = 516

 Score =  300 bits (767), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 100/525 (19%), Positives = 198/525 (37%), Gaps = 39/525 (7%)

Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSV 357
              + +                +     +  P     +   G + + NPS   +  Y S+
Sbjct: 17  RKRHPNISGRLRNHIQDRSLAEMYASLFEHNPDSIISLNLEGIILHINPSAERILGYTSL 76

Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
           + +E    +S L       + +  + V+ Y  +         + +I       L +    
Sbjct: 77  E-LERKNIISIL-------EAHISEQVLQYIKNTEADNQQEYILSIYHKEGYLLDVVTKL 128

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
                Q         ++P +   RI ++ ++    +L +++ A    +   + EG  L  
Sbjct: 129 VPIFVQHRLTGVYAIMKPLEKSERI-EKMLQESEKRLRTLMNAMPAFVIFKDHEGRWLEA 187

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN----HYLTEILSLDLRQTLEKITLGST 533
           N      F +       K  +  ++ N            + E+     RQ L        
Sbjct: 188 NDYALSCFNFHHVPYHGKKDSELIQYNAAYREAFLHCEEVDELAWQ-KRQILHGEEFIIH 246

Query: 534 KEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
           +++  L L I    L           +   D++E K+ +  L  ++K+A           
Sbjct: 247 RDDFDLILSISKVPLYHPDGSRKGLIVMGRDVTELKETEKLLRKSEKLAVV-----GQLT 301

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
           A ++HEIR PLT++ GF  ++      P  N     Y + +    + +  I +  + +SK
Sbjct: 302 AGIAHEIRNPLTSLKGFLTLLL-----PEINEENKWYVDVMLSEISQMESITSQFMAMSK 356

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709
            +     L  +  ++   + E ++ +   A    + I     N+   I  D   +KQ+ +
Sbjct: 357 PQ----VLSVQTYNIQTLIEEVVTFLLPTAIMHSVHIIMDHFNHKHDIQCDGNQLKQVFI 412

Query: 710 NILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
           NIL NAI   P+GG I I      N  +++R+ D G G+    + +  +PF        +
Sbjct: 413 NILKNAIEAMPNGGNIFIQIKSLDNNFIVIRIIDEGCGIPEDRISRLGEPFY------SL 466

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           + +GTGLGL +   +++ + GK +I S   KGT+++I  PL  + 
Sbjct: 467 KEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTIVDIQLPLSSSH 511


>gi|56695086|ref|YP_165433.1| sensory box histidine kinase/response regulator [Ruegeria pomeroyi
           DSS-3]
 gi|56676823|gb|AAV93489.1| sensory box histidine kinase/response regulator [Ruegeria pomeroyi
           DSS-3]
          Length = 823

 Score =  300 bits (767), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 86/376 (22%), Positives = 170/376 (45%), Gaps = 13/376 (3%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL-EQ 503
            + E    +  + +++  D + +++ EG I+  N     +FGY   + L +P +  +   
Sbjct: 202 AEKEAVKSRFEAAVKSALDAVLVVDTEGHIIEFNGGAEAMFGYSRSEALGQPMSDLIIPP 261

Query: 504 NTPSVMNHYLTEILSLDLRQTLEK---ITLGSTKEEKLLSLRIIIK--KLPFSSCYSLTM 558
           +  +     +         + + +      G  K  ++  + + I   +      +   +
Sbjct: 262 HYRARHEEGMRRFREHGTSRVVGRGHLRLEGMRKSGEVFPIELSISLAETSDQLVFISFL 321

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            DI+   + ++ L  A+  A+  +  K+  L  +SHE+RTPL  I+G  ++++     P 
Sbjct: 322 RDITNRLKTEDDLREARDTAQAGAQAKAQLLTVMSHEMRTPLNGILGSLDLMERDELSP- 380

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
              + +     I  SG L+L  VN +LD+S++ESG +    EP +L   V      +   
Sbjct: 381 ---KQVRLVRAIRVSGELLLTQVNRVLDLSRLESGMIEFPKEPFALLPMVRRLTESLTAA 437

Query: 679 ANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIIST-THTSNEE 736
           A E+   ++T+   + P  +L +  +++Q  +N+L NAI FT   G+I +       +  
Sbjct: 438 AEERGNRLQTTLVGDDPGVVLGNRIALQQALVNLLGNAIKFT-RNGEISLEVERLNDDRM 496

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           +  R+ DTG+G+   ++E+    F  I  +      GTGLGL + + +V A  G+  + S
Sbjct: 497 IEFRISDTGLGIPAKDIERIFDEFVTIDTAYARENPGTGLGLSITRRLVWAMGGEIEVES 556

Query: 797 TPAKGTLIEIIFPLYD 812
              +G+L  I  PL  
Sbjct: 557 IEHEGSLFLIRLPLEP 572



 Score = 43.9 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 36/399 (9%), Positives = 91/399 (22%), Gaps = 39/399 (9%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP--NNHIGDLLKRQNTWYGK 146
           +D  G++ E +       G    + +G  + D+    H        +    +   +    
Sbjct: 225 VDTEGHIIEFNGGAEAMFGYSRSEALGQPMSDLIIPPHYRARHEEGMRRFREHGTSRVVG 284

Query: 147 TTLWPIEG---TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                +EG   +    PI+L+     + ++          +             +     
Sbjct: 285 RGHLRLEGMRKSGEVFPIELSISLAETSDQ----LVFISFLRDITNRLKTEDDLREARDT 340

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK----- 258
                + K    +V   +              M+    S  +    +   +  E      
Sbjct: 341 AQAGAQAKAQLLTVMSHEMRTPLNGILGSLDLMERDELSPKQVRLVRAIRVSGELLLTQV 400

Query: 259 ---YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
                L   E   +   ++   +        +             +     + P +    
Sbjct: 401 NRVLDLSRLESGMIEFPKEPFALLPMVRRLTESLTAAAEERGNRLQTTLVGDDPGVVLGN 460

Query: 316 DEGENLTPETVDKCPIPFFVYSHGNL----FYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
                     V+          +G +       N   ++  +         A  +  + D
Sbjct: 461 RIALQQ--ALVNLLGNAIKFTRNGEISLEVERLNDDRMIEFRISDTGLGIPAKDIERIFD 518

Query: 372 APKLSDNNAIKP-----------VMLYRSDRTCIAASARLHT-----IQWNRENSLAMTF 415
                D    +              L  +    I   +  H      I+   E   A+  
Sbjct: 519 EFVTIDTAYARENPGTGLGLSITRRLVWAMGGEIEVESIEHEGSLFLIRLPLEPGEAVEL 578

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
              ++  Q      +        D  IN+  +   + + 
Sbjct: 579 ASEKERGQPEPGPLKGKRVLVIEDNDINRMLLLDMLEEF 617


>gi|256827994|ref|YP_003156722.1| histidine kinase [Desulfomicrobium baculatum DSM 4028]
 gi|256577170|gb|ACU88306.1| histidine kinase [Desulfomicrobium baculatum DSM 4028]
          Length = 758

 Score =  300 bits (767), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 90/358 (25%), Positives = 156/358 (43%), Gaps = 18/358 (5%)

Query: 470 REGIILSTNRAVSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
             G I +  R   ++        L   K        +   +    L E         + +
Sbjct: 273 EHGRIAA--RMALQILDGTAPSALPVVKEIANRFLFDHRELTRFNLDEKALPKGSVIVHR 330

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
                   ++L  +   I         SLT+  +   KQ   +L  A++ A++ +  KS 
Sbjct: 331 PRNIFEANKRLFLIFGSIVIALLVIIISLTLV-VHIRKQTLLQLQSARRKADEANEAKSL 389

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           FLA +SHEIRTPLT I+G +E+      G  GNP   EY   I +SG  +L I+ND+LD 
Sbjct: 390 FLAHMSHEIRTPLTGIMGLAEL----AIGNPGNPGVQEYLTLIRQSGQNLLHIINDILDF 445

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQ 706
           SK+E+GK+ L     +    +   I+  +    EK + +    A  +P+ ++ D   ++Q
Sbjct: 446 SKVEAGKIELQKNRFNARSMLEATIAFFKPGIREKGVTLSLVLAEELPQAVVGDENRIRQ 505

Query: 707 IALNILSNAIHFTPSGGQIIIST------THTSNEEVILRVRDTGVGMTNYELEKAMKPF 760
           I  N++ NA+ FT  G +I +         +++   +   + D+G G+   + +   + F
Sbjct: 506 IFFNLVGNAVKFTEKG-KIELRLTGLTSEENSARMMLHFEIMDSGCGIPADKQDSIFERF 564

Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
            Q         +GTGLGL + K +++A  G   + ST   GT      P+ + + P +
Sbjct: 565 TQAARFPTRTYQGTGLGLAIVKQLIEAMGGSIGVRSTEGVGTTFFFNIPV-ERALPEE 621


>gi|91218137|ref|ZP_01255086.1| sensory transduction histidine kinase [Psychroflexus torquis ATCC
           700755]
 gi|91183684|gb|EAS70078.1| sensory transduction histidine kinase [Psychroflexus torquis ATCC
           700755]
          Length = 800

 Score =  300 bits (767), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 106/600 (17%), Positives = 217/600 (36%), Gaps = 37/600 (6%)

Query: 235 RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYF----- 289
           R      +  E     D+  K      + ++E +    E     N      K+       
Sbjct: 212 RADELAIANKELAFQNDEKEKRADELAIANKELTFQNGEKQKRANELAIANKELTFQNDE 271

Query: 290 --GTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANP 346
                   +    E              +       + ++    P F + + G +   N 
Sbjct: 272 KQKRANELAIAKKELDFQVVLTKNRIETESIAKELRQFIETANAPIFGIDNKGMVNEWNQ 331

Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
           +   +T +K  D +      + + +      +   K +      +        L T    
Sbjct: 332 TSEKITGFKKEDVLGQNLVKTYITEDY---RDAVKKVLDNALKGQETANYEFPLFT---K 385

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
               + +      + N   E +   G+  +  +    + + E    +L   +E  +  I 
Sbjct: 386 GGQRVMVLLNASTRRNAEGEIVGVLGVGQDISEMDKLRTQSESVAKELRQFIETANAPIF 445

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTV-FLEQNTPSVMNHYLTEILSLDLRQTL 525
            I+ +G +   N+   K+  +  ED+L +     ++ Q+    +   L   L        
Sbjct: 446 GIDNKGRVNEWNQTSEKITRFKKEDVLGEDLVQTYITQDYQKQVKEVLDNALKGQETANY 505

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDIS---EWKQEKNKLSHAKKIAEK 580
           E        +  ++ L    ++              DI+   E K+       ++    +
Sbjct: 506 EFPLFTKGGQRVMVLLNASTRRNAEGEIVGVIGVGQDITILNEHKENLESKVESRTQEFQ 565

Query: 581 ES--------SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
           ES          K+ F++  SHE RTPLT+I   ++VI    +  L      +    I  
Sbjct: 566 ESLEREKELGQLKTSFVSMASHEFRTPLTSINAIADVILR-YYEKLSRNDINKRLEKIKE 624

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
               ++ ++ D+L I K E+ K++ + + + +   +   I+  Q   +EKR ++   +  
Sbjct: 625 EVEDMVIMLEDILIIGKSEAQKLDYNPKLLDIVALIKNIITEYQFGESEKRFIV---YDI 681

Query: 693 NIPRILA--DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
           ++P I+A  D + +K I +N+ SNA+ ++    QI IS     +  +     D G+G++ 
Sbjct: 682 SLPVIMAQVDKKWIKHIIINLFSNALKYSNKDKQIEISIKKEQSG-ISFSFEDYGIGISK 740

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            +++   KPF +  N Q     GTGLGL + +  V+ + G   + S   KG+   II P+
Sbjct: 741 QDIKLLFKPFHRGNNVQN--ISGTGLGLSVLQKAVELHKGTIEVKSKIGKGSYFRIILPI 798



 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 61/195 (31%), Gaps = 9/195 (4%)

Query: 37  EKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLK 96
           EK K+ N    + ++ +F     ++   T  +  E     +         + ID  G + 
Sbjct: 271 EKQKRANELAIAKKELDFQVVLTKNRIETESIAKELRQFIETANAP---IFGIDNKGMVN 327

Query: 97  EISEELPKTIGNYAFKMIGMRLCD--VSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEG 154
           E ++   K  G     ++G  L    +++         + + LK Q T   +  L+   G
Sbjct: 328 EWNQTSEKITGFKKEDVLGQNLVKTYITEDYRDAVKKVLDNALKGQETANYEFPLFTKGG 387

Query: 155 TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214
               V + L A    +   E  G  G G        +  R   + + K+     E     
Sbjct: 388 --QRVMVLLNASTRRNAEGEIVGVLGVG--QDISEMDKLRTQSESVAKELRQFIETANAP 443

Query: 215 SSVEKEKYDIFSQQS 229
                 K  +     
Sbjct: 444 IFGIDNKGRVNEWNQ 458



 Score = 46.2 bits (108), Expect = 0.026,   Method: Composition-based stats.
 Identities = 29/206 (14%), Positives = 66/206 (32%), Gaps = 11/206 (5%)

Query: 59  QESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRL 118
            +  + +  +  E     +         + ID  G + E ++   K        ++G  L
Sbjct: 420 DKLRTQSESVAKELRQFIETANAP---IFGIDNKGRVNEWNQTSEKITRFKKEDVLGEDL 476

Query: 119 CD--VSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFS 176
               ++          + + LK Q T   +  L+   G    V + L A    +   E  
Sbjct: 477 VQTYITQDYQKQVKEVLDNALKGQETANYEFPLFTKGG--QRVMVLLNASTRRNAEGEIV 534

Query: 177 GFRGFG----IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP 232
           G  G G    I++ ++ + + +   +  + + S   E + G              ++P  
Sbjct: 535 GVIGVGQDITILNEHKENLESKVESRTQEFQESLEREKELGQLKTSFVSMASHEFRTPLT 594

Query: 233 HLRMKNKVSSLTEYYAHKDDVLKTEK 258
            +     V         ++D+ K  +
Sbjct: 595 SINAIADVILRYYEKLSRNDINKRLE 620


>gi|332526490|ref|ZP_08402602.1| multi-sensor hybrid histidine kinase [Rubrivivax benzoatilyticus
           JA2]
 gi|332110758|gb|EGJ10935.1| multi-sensor hybrid histidine kinase [Rubrivivax benzoatilyticus
           JA2]
          Length = 669

 Score =  300 bits (767), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 107/565 (18%), Positives = 218/565 (38%), Gaps = 47/565 (8%)

Query: 278 INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS 337
           +     + +   G  +   +            ++    D    +  + +   P       
Sbjct: 29  LANAWISHRDERGRQREQVQAVLGAYGPALAKAVWELDDASVQVQLQGLRSFPALLSAEV 88

Query: 338 HGNLFY-------ANPSFLLLTKYKSVDDIEIAGGLSTL-------------LDAPKLSD 377
            G           ANP     T    +   +  G ++ L               A +   
Sbjct: 89  RGRGIDERYAKPGANPVHAGETLRHPLPAPDGQGTVAVLELRLDEDWLNGQVWQASRQFA 148

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI----PFEKANQFPENMPQNGI 433
             A+  ++L  +    + A +    ++    +  A+       P  +       +     
Sbjct: 149 AAALVEMLLLAALVYALVARSVSRPLERLHAHVRALDLSRLGEPAPRPPGPANELHALAD 208

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP-VEDI 492
               +   +  + + ++  Q   +L   +DG  +++ +G I+  N A + + G       
Sbjct: 209 GITGLQRALQHQ-LALQTRQFDEVLRRMADGAGVVDADGRIVVCNPAWAAMLGAAGPAQA 267

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK-----K 547
           L  P T +L + +   +   L +  +L               +   L+            
Sbjct: 268 LGLPATAWLAEPSWDTLAARLAQAGTLPAE-----DLSLRRADGGTLATEASFAVFARAD 322

Query: 548 LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
               +   L + D+S  ++ +  L  A++ AE  +  KSDFLA +SHEIRTP+ AI+G +
Sbjct: 323 AGAPARVQLVLRDVSARRETERTLVAAREAAEAATRAKSDFLANMSHEIRTPMNAILGMT 382

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
            +          +PR  +Y      +   +L IVN +LD SKIE+G++ L  +   LD  
Sbjct: 383 ALALRTEL----DPRQRDYLEKTRAAAQSLLGIVNVILDFSKIEAGRLELEHDEFELDAV 438

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII 726
           +    ++V L A+++ +      +  +PR ++ D   + Q+ +N+  NA+ F+  G +++
Sbjct: 439 LDGVAAIVALQAHDRGLGFLLDVSEQVPRRLVGDALRLSQVLVNLCGNAVKFSERG-EVL 497

Query: 727 ISTTHTSNEE-----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           +        +     +   V D G+G++  +LE+  +PF Q+  S   R  GTGLGL ++
Sbjct: 498 VRVEALDAADPHLQRLRFVVHDEGIGLSPQDLERLFRPFSQVDASTTRRYGGTGLGLAIS 557

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEI 806
           + +V A  G   + S+P +G+    
Sbjct: 558 RQLVQAMGGDIAVRSSPGRGSEFAF 582



 Score = 48.1 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/278 (7%), Positives = 56/278 (20%), Gaps = 22/278 (7%)

Query: 184 VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK-NKVSS 242
           +            G+ +D++++             +        Q     L ++ ++   
Sbjct: 77  LRSFPALLSAEVRGRGIDERYAKPGANPVHAGETLRHPLPAPDGQGTVAVLELRLDEDWL 136

Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302
             + +             +L              +  L +         L    + +   
Sbjct: 137 NGQVWQASRQFAAAALVEMLLLAALVYALVARSVSRPLERLHAHVRALDLSRLGEPAPRP 196

Query: 303 LSHRNHPSLSA------------YFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFL 349
               N     A                      E + +       V + G +   NP++ 
Sbjct: 197 PGPANELHALADGITGLQRALQHQLALQTRQFDEVLRRMADGAGVVDADGRIVVCNPAWA 256

Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
            +               + L      ++ +            T  A    L   + +   
Sbjct: 257 AMLGAAGPAQALGLPATAWL------AEPSWDTLAARLAQAGTLPAEDLSLR--RADGGT 308

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
                                  +  +    R  +R +
Sbjct: 309 LATEASFAVFARADAGAPARVQLVLRDVSARRETERTL 346



 Score = 46.2 bits (108), Expect = 0.022,   Method: Composition-based stats.
 Identities = 24/342 (7%), Positives = 73/342 (21%), Gaps = 16/342 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNY-AFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
           +DA G +   +      +G     + +G+           D    +   L +  T   + 
Sbjct: 242 VDADGRIVVCNPAWAAMLGAAGPAQALGLPATAWLAEPSWDT---LAARLAQAGTLPAED 298

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                   +       A+  +++R    +  R   ++       +         +     
Sbjct: 299 LSLRRA--DGGTLATEASFAVFARADAGAPARVQLVLRDVSARRETERTLVAAREAAEAA 356

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
              K    +    +                       +    +      +    + +   
Sbjct: 357 TRAKSDFLANMSHEIRTPMNAILGMTALALRTELDPRQRDYLEKTRAAAQSLLGIVNVIL 416

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA-YFDEGENLTPETV 326
              + E      L     +     + +         +H           ++         
Sbjct: 417 DFSKIEAGR---LELEHDEFELDAVLDGVAAIVALQAHDRGLGFLLDVSEQVPRRLVGDA 473

Query: 327 DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
            +      V   GN    +    +L + +++D  +        +   +    +      L
Sbjct: 474 LRLSQ-VLVNLCGNAVKFSERGEVLVRVEALDAADPHLQRLRFVVHDEGIGLSPQDLERL 532

Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
           +R             T +      L +            +  
Sbjct: 533 FRPFSQ-----VDASTTRRYGGTGLGLAISRQLVQAMGGDIA 569


>gi|330906560|ref|XP_003295520.1| hypothetical protein PTT_01412 [Pyrenophora teres f. teres 0-1]
 gi|311333138|gb|EFQ96385.1| hypothetical protein PTT_01412 [Pyrenophora teres f. teres 0-1]
          Length = 1988

 Score =  300 bits (767), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 118/732 (16%), Positives = 233/732 (31%), Gaps = 107/732 (14%)

Query: 163  LAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKY 222
            LA  P +          GF             A  + ++  F    +  K  +   +++ 
Sbjct: 789  LAGTPGWDAAS-----LGFSSKQSVSSTPGHLAGSEAVESYFDARKQYTKSLTQSAQDQS 843

Query: 223  DIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTIN 279
               + + P        +  +V   T    ++ +   + +   L    +        +  +
Sbjct: 844  ARKTDKRPTKRVTMNPVAEQVGEDTSKSRNEKEDTLSARRVQLQDPSNRNHSYLHSYGAD 903

Query: 280  LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-- 337
                 +     T      ++ +  + R+  S        E+L    +D  P+  F  +  
Sbjct: 904  FTSSFQSLPAATTPGGRPQAPQAHARRSSISDVDMPPPSESLLRTIIDSLPVQIFTAAPT 963

Query: 338  HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397
             G + + N  FL+     S   ++                 + ++           +   
Sbjct: 964  TGVITWVNSKFLIYRGQTSGQVLQNPWD-----SMHPEDRGSYLEEWSRSLRTGQQLQKK 1018

Query: 398  ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR------KMEIEV 451
             RL       +             N+  + +   G   +  +  + ++      +     
Sbjct: 1019 VRLQRF---DQCYRWFYVRVAPLKNKRQQIVHWIGTNMDFHEQHLAEQNSARQQETAASE 1075

Query: 452  MQLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
             +  ++  ++   + ++ +R G +   N       G    + L   F   +  +   V+ 
Sbjct: 1076 AKYRALANSSPQIVFVVSDRRG-LTFCNSQWISFSGQSEANALGNGFLEHVHPDD--VIK 1132

Query: 511  HYLTEILSLDLRQT-------------------LEKITLGSTKEEKLL-SLRIIIKKLP- 549
              L E+    +                       E     ++        + +   KL  
Sbjct: 1133 CKLPELDEHGVANVPTTLPPDHGQQDSSSSDASSETERTITSPSGSTPDRMDMPQAKLSK 1192

Query: 550  -FSSCYSLTMHDISEW------KQEKNKLSHAKKIAEKESSHKS---------------- 586
              S+     + D           + +NK    +    +    KS                
Sbjct: 1193 LASTGILRVVKDAHGRPSYSTEVRLRNKDGDYRWHLVRVLLEKSLAENNNEETWYGSATD 1252

Query: 587  -------------------DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
                                FL+ +SHEIRTPL  I G    + +       N   +E+ 
Sbjct: 1253 INDHKLLEQTLKETMDAKSKFLSNMSHEIRTPLNGISGMVNFLLDSVL----NAEQLEHV 1308

Query: 628  NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
            N I  S + +L+++ND+LD+SK+E+G + L  E + L   + E   L    A +K + + 
Sbjct: 1309 NIIKASTDSLLNLINDILDLSKVEAGMIKLSMEWLHLPSLLEEVNDLNMGLAIQKGLELN 1368

Query: 688  TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---------- 736
                  +P  +  D   ++Q+ LN++ NAI FT  G +I I       +           
Sbjct: 1369 YLVEEGVPAEVKGDKFRIRQVLLNVVGNAIKFTERG-EIFIRCKVQPPDRSRPLKENETM 1427

Query: 737  VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
            V   V DTG G T+ E +   K F QI  S   +  GTGLGL ++   V+ + G+    S
Sbjct: 1428 VRFEVIDTGQGFTDAEAKYLFKRFSQIDASSTRQHGGTGLGLAISMQFVELHGGRMDARS 1487

Query: 797  TPAKGTLIEIIF 808
             P KG+      
Sbjct: 1488 APGKGSTFFFTI 1499


>gi|189425517|ref|YP_001952694.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter
           lovleyi SZ]
 gi|189421776|gb|ACD96174.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter
           lovleyi SZ]
          Length = 797

 Score =  300 bits (767), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 110/775 (14%), Positives = 232/775 (29%), Gaps = 83/775 (10%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKRQNT---WYGK 146
             G L + ++   + +G     ++G +  D        D    + + +KR         +
Sbjct: 57  PDGTLLDANQTALQFVGADKAAVVGKKFWDTPWWSHDPDSQTRLQEYIKRCAAGEFIRFE 116

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
            T    +G    +   L   P+     +       G         + +   +  +     
Sbjct: 117 GTHRDADGRLRAIDATL--KPLKDAGGQVIYLIPEG--RDVTDLQEAQTALRHKNILLET 172

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPH-----LRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
           L E       +   +  +  Q           +    +   +T        +   +    
Sbjct: 173 LFENIPFDIWIRDTEGRLLLQNEMNARHYGVKIGNTPEEDDITPEQCRLFRISLEQALEG 232

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
            + +     E++ +  I        Q               +   +  +       GE  
Sbjct: 233 FSLDLELREEEQIYRKIVAPIRHNNQITAIF-------GLNIDVTDRFTAMEALRSGEKR 285

Query: 322 TPETVDKCPIPFFVYSH--GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
                ++ PI   +           N SF  L+ Y     I        L   P      
Sbjct: 286 FKAIFEESPIAIAITDLTHRRYVDVNRSFCSLSGYTKSMIIGKTTQELGLFWNPGDD--- 342

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
             +   +     +  A   +  T    + + +  T I   +            +  +  +
Sbjct: 343 -ARLYQMLTDTGSINAEEIQTRTATGEQRSGILFTRIIMIEK-----AAHAISLYQDITE 396

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
            +  + +++        I +    GI   +  G  +S N   + +FGY     +      
Sbjct: 397 QKRVEEQLKSSEESYKGIFDNAPIGIFQSSPAGHYISINNVFASIFGYASPQEMMALVHD 456

Query: 500 FLE--QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT 557
                          +T++ S D     +             ++ I   +   +    L 
Sbjct: 457 IPRQIYADAEQRQEIITKLRSRDTLIVDDIQFYRKDGTRFYATMYIRGTRDTATGEVVLL 516

Query: 558 ---MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
              + D +E +Q    +   +K+        S   A ++HEI  PL  I    + ++ + 
Sbjct: 517 DGFVVDTTEHRQTLEIMLQHEKML-----MISGLAAGMAHEINNPLGIIAQDLQNLERRL 571

Query: 615 FGPLGNPRYI---------------------EYANYIDRSGNLVLDIVNDLLDISKIESG 653
              L   R I                      Y   +  +      I++++L  S+  S 
Sbjct: 572 SPALPKNRQIAEELGIDLIALQQYLKQREINSYLASMQNAARRASRIMDNMLQFSR--SN 629

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKR------ILIRTSFANNIPRILADLRSVKQI 707
             + H  P  L   +  A+ L     + +R      I +   +  ++P ++ +   ++Q+
Sbjct: 630 GTSRHPAP--LYTVIEHALELAGSDFDLRRTYNFSTITLIRDYTPDLPLVVINTTEIEQV 687

Query: 708 ALNILSNAIH--FTPSGG---QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
            +N++ NA         G   +I IS  H  +   ++ V D G GMT     +  +PF  
Sbjct: 688 LINLIKNAAQSLHGRQNGPQPEIRIS-AHQDDAVAVISVADNGPGMTEEVRRRVFEPFFT 746

Query: 763 IPNSQQIRGEGTGLGLPLAKAMV-DANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
             +     G+GTGLGL ++ A++   + G   + S P +G    I  P      P
Sbjct: 747 TKD----VGKGTGLGLAVSHAIITKNHHGLLTVSSRPGQGCCFTITLPTLQAEQP 797



 Score = 58.1 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 15/128 (11%), Positives = 48/128 (37%), Gaps = 11/128 (8%)

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF----TVFLEQNTPSVMNH 511
           +I + T     ++  +G +L  N+   +  G     ++ K F        + ++ + +  
Sbjct: 43  AIFDNTFQLQGLLAPDGTLLDANQTALQFVGADKAAVVGKKFWDTPWWSHDPDSQTRLQE 102

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM----HDISEWKQE 567
           Y+    +    + +         + +L ++   +K L  +    + +     D+++ ++ 
Sbjct: 103 YIKRCAAG---EFIRFEGTHRDADGRLRAIDATLKPLKDAGGQVIYLIPEGRDVTDLQEA 159

Query: 568 KNKLSHAK 575
           +  L H  
Sbjct: 160 QTALRHKN 167



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 53/389 (13%), Positives = 104/389 (26%), Gaps = 27/389 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            W  D  G L   +E   +  G      IG    +      I P       +  +    G
Sbjct: 181 IWIRDTEGRLLLQNEMNARHYGVK----IGNTPEE----DDITPEQCRLFRISLEQALEG 232

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
            +    +          +A  PI   N + +   G  I              +  +K+F 
Sbjct: 233 FSLDLELREEEQIYRKIVA--PIR-HNNQITAIFGLNI--DVTDRFTAMEALRSGEKRFK 287

Query: 206 HLHEIKKGHSSVEKEKYDI---FSQQSPPPHLRMKNKVSSLTEYY--AHKDDVLKTEKYP 260
            + E      ++    +      ++         K+ +   T        +       Y 
Sbjct: 288 AIFEESPIAIAITDLTHRRYVDVNRSFCSLSGYTKSMIIGKTTQELGLFWNPGDDARLYQ 347

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL--SHRNHPSLSAYFDEG 318
           +LT   S   E+    T    Q +   +   +          L         +       
Sbjct: 348 MLTDTGSINAEEIQTRTATGEQRSGILFTRIIMIEKAAHAISLYQDITEQKRVEEQLKSS 407

Query: 319 ENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
           E       D  PI  F  S  G+    N  F  +  Y S  ++     L   +     +D
Sbjct: 408 EESYKGIFDNAPIGIFQSSPAGHYISINNVFASIFGYASPQEMM---ALVHDIPRQIYAD 464

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
               + ++     R  +     +   + +     A  +I   +     E +  +G   + 
Sbjct: 465 AEQRQEIITKLRSRDTLIVD-DIQFYRKDGTRFYATMYIRGTRDTATGEVVLLDGFVVDT 523

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIA 466
            + R     M      L  ++   + G+A
Sbjct: 524 TEHRQTLEIMLQHEKML--MISGLAAGMA 550


>gi|326202280|ref|ZP_08192149.1| multi-sensor signal transduction histidine kinase [Clostridium
           papyrosolvens DSM 2782]
 gi|325987398|gb|EGD48225.1| multi-sensor signal transduction histidine kinase [Clostridium
           papyrosolvens DSM 2782]
          Length = 620

 Score =  300 bits (767), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 84/375 (22%), Positives = 165/375 (44%), Gaps = 31/375 (8%)

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
             I+   SD + I + +G I+  N ++ +L GY   ++L K  +                
Sbjct: 231 KQIISKISDMVIITDTKGKIVEVNDSLKELSGYCYSELLEKDISTLFSPK---------- 280

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-----CYSLTMHDIS-----EW 564
             +  D            T+E   + + + I ++           +  + DIS       
Sbjct: 281 --ICSDKASVKVSGYKILTRENHTIPVNMSISQIYSEDKTTIIGTAYVLQDISNVLSLAE 338

Query: 565 KQEKNKL-----SHAKKIAEKESSHKSDFLARVSHEIRTPLTAI---IGFSEVIKNQRFG 616
           K  +        + A     +    K+DFL  VSHE+RTPL  +   +  S +  +Q  G
Sbjct: 339 KVAEEAAVTKVANQANDKLIELDKLKTDFLCNVSHELRTPLNLMVSSLKLSALKISQNHG 398

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
            L      ++ + ++++   +  I+N+++DI+KI++G ++L+    ++ + V E +  V 
Sbjct: 399 VLDTVMMHKHFHIMNQNCFRLTRIINNIIDITKIDAGSLDLNLTNNNIVDVVEETVLSVA 458

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
            +  +K I +          +  D   +++I LN++SNA+ F  SG +I +S    +   
Sbjct: 459 SHIKDKGITLIFDTDVEEKFLACDPDQIQRILLNLISNAVKFNSSGREIYVSIEDCTEN- 517

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           + + V+D G+G++          F Q+  S   + EG+G+GL + K +V+ + G   + S
Sbjct: 518 IKISVKDNGIGISLENQPFIFDRFIQVDKSLTRQHEGSGMGLTITKYLVELHKGTITLES 577

Query: 797 TPAKGTLIEIIFPLY 811
            P KG+   I  P+Y
Sbjct: 578 EPTKGSTFTITLPVY 592


>gi|71280946|ref|YP_268669.1| sensory box sensor histidine kinase/response regulator [Colwellia
            psychrerythraea 34H]
 gi|71146686|gb|AAZ27159.1| sensory box sensor histidine kinase/response regulator [Colwellia
            psychrerythraea 34H]
          Length = 1328

 Score =  300 bits (767), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 114/751 (15%), Positives = 246/751 (32%), Gaps = 63/751 (8%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI-GDLLKRQNTWYGKT 147
            +D       +++   + +     ++IG    D+    + +    I  +          + 
Sbjct: 301  LDDKFVYLAVNQAYAEKLNLTIDQVIGKHPRDIYSKGYFESELKIYSERCLAGEIIKLEK 360

Query: 148  TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
             +    G   ++ I+++  P Y  +    G                +   ++      + 
Sbjct: 361  WMRSSSGQAWFIDIEMS--PYYQNDGNIYGVM--VNARDITELKHYQDNLEKSKLVIENS 416

Query: 208  HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS----LTEYYAHKDDVLKTEKYPLLT 263
              I            +  S       ++  + +S         +      +  E      
Sbjct: 417  RVI--AFRWKPDCSVEHVSSNVDLLGVKASDLLSGKTKYTDMVHPQDLARVMQEVRSFTE 474

Query: 264  SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
                    +    + +   Y  +      +        Y       +     +     + 
Sbjct: 475  KGVKQFIHEYRIVSPSGAMYWVEDRTTIERGEDNNVAFYQGIVIDITEKKQVELKLKQSN 534

Query: 324  ETVDKC----PIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
              +       P   F   +      AN +F    K  S   I          D    +  
Sbjct: 535  AIIQNVINSTPDLIFAKNTEHQYILANNAFAHSLKQSSQSLIGKTDQQFNYTDEQINN-- 592

Query: 379  NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
                       D   +  S  +   +   + +  +    F   N+  +     GI  +  
Sbjct: 593  -------FKMQDEKVLHGSCVITPSRRPLDGNKVLETSKFPLRNENGDIGGVIGIGHDVT 645

Query: 439  DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
            +   N  K+  +  +L   L+A  D +  I+  G+ILS NRA   +FGY  E+++    +
Sbjct: 646  EHIANLAKISKQQKELSQTLDAIFDAVITIDESGLILSCNRATELMFGYAAEELVGNNVS 705

Query: 499  VFLEQNTPSVMNHYLTEILSLDLRQTL--EKITLGSTKEEKLLSLRIIIKKLP----FSS 552
            + + +   +  + Y+   L     + +   +  +G  K++K   L + I +LP       
Sbjct: 706  LLMPEKLAAQHDEYINNYLLTGENKIIGRGRELVGKNKDQKAFPLHLTIAELPKNKDERK 765

Query: 553  CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
             +    HD+S+ KQ +  L+  +K+              ++H+    L  IIG+S+++K 
Sbjct: 766  RFVGVCHDLSKTKQHEKLLNRTQKM-----EALGQLTGGIAHDYNNMLGVIIGYSDILKT 820

Query: 613  QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
            Q       P  + +   I ++G+    +   LL  S+    +     +   ++  +    
Sbjct: 821  QL---KDQPGLLNFVEQIHQAGDRGAQLTRKLLSFSR----QTPDASQESDINRLIKNNK 873

Query: 673  SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT-- 730
             +++       + +R +  + I +I  D  S +   LN+  NA+H  P GG + +ST   
Sbjct: 874  DVLRKTLLS--VDLRLNLDDAIHKINIDRNSFEDALLNMAINAMHAMPHGGVLNLSTCEV 931

Query: 731  -----------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
                           + V L + D G GM+    +K  +PF           +G+GLGL 
Sbjct: 932  ELSKEQAANFNIEQGKYVQLSIEDNGEGMSKAIQDKIFEPFFSTKGD-----QGSGLGLA 986

Query: 780  LAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
                 + ++MG   ++S    GT   +  P+
Sbjct: 987  QVYGFIKSSMGAINVYSELGSGTRFSLYLPI 1017



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 49/126 (38%), Gaps = 4/126 (3%)

Query: 453 QLCSILEATSDGI-AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
           Q  S++   S G+ A+++ + + L+ N+A ++     ++ ++ K       +        
Sbjct: 286 QYKSMV-TLSSGMQALLDDKFVYLAVNQAYAEKLNLTIDQVIGKHPRDIYSKGYFESELK 344

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKN 569
             +E         LEK    S+ +   + + +        +     +   DI+E K  ++
Sbjct: 345 IYSERCLAGEIIKLEKWMRSSSGQAWFIDIEMSPYYQNDGNIYGVMVNARDITELKHYQD 404

Query: 570 KLSHAK 575
            L  +K
Sbjct: 405 NLEKSK 410


>gi|298675083|ref|YP_003726833.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalobium evestigatum Z-7303]
 gi|298288071|gb|ADI74037.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalobium evestigatum Z-7303]
          Length = 862

 Score =  300 bits (767), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 94/741 (12%), Positives = 226/741 (30%), Gaps = 50/741 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID-PNNHIGDLLKRQNTWYGKT 147
            D +GY           IG     + G  + D       +         L+  N    + 
Sbjct: 146 TDKYGYFVYAGPSHELVIGYKPENLTGKNVLDFVHPDDYEWMVEEYQQFLQTLNPKKVEY 205

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                +G   Y+ ++     I+         R            +            +  
Sbjct: 206 RYLHSDG--YYIWLETIGNVIHDDYGNVK--RVVFSSRDITEHKELENELINTYSIINSS 261

Query: 208 HEIKKGHSSVEKEKYDIFSQQS------PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
             +        ++ + +                       S  +     D      +   
Sbjct: 262 PAV--AFLWANEDGWPVKYVSENVIDTFGYSAGDFTANKLSYADVINPDDLGRVVSEVYY 319

Query: 262 LTSEESSLPEQEDFHTI---NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY---- 314
            +++   +  Q   + I   N N          L+++      Y       + +      
Sbjct: 320 YSNDPDCVKFQHKPYRIITKNENIRWVDDRTYILRDDDGNVTNYQGIILDITENKVINDK 379

Query: 315 FDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
             E E +  +  +       V     N+   N        Y+    +E            
Sbjct: 380 LKENEKMLDDVFESIQDGISVIDSDFNIVRVNSKMNEW--YEENVPLEGKKCYHAYQYYE 437

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
              +                      + T     +      +          E       
Sbjct: 438 SPCEKCPTDSAFRTGKT------QMDIVTGLPGSKPKWFEIYSYPVINGDNGEISSVVEF 491

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
             +  D    ++K+E     L  I++    GI I ++ G   S N A   ++GY  ++++
Sbjct: 492 VRDISDRVDAEQKLEKSRNMLQDIIQNIPVGICITDKNGYFDSVNPAYCSIYGYNSDELV 551

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553
            K FTV + +     ++      +      + E   +      K +       +      
Sbjct: 552 GKHFTVVVPEEYKKELSSLHDRFIKGIDELSGEWPVIDKDSNPKTILATATKVQDFDDEP 611

Query: 554 -YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
                + DI+  KQ +NKL       E+ +  +  F   + H++  P+  + G++ ++  
Sbjct: 612 KKVTFVIDITGRKQTENKLQDYTNELERLNEIREIFTDILRHDLLNPVGIVKGYANLL-- 669

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
             +    +   ++  + +  +    ++++ +  ++++I+  + N+ F    + E + E I
Sbjct: 670 --YKKETDENKLKILDKMIINNERAIELIENAGNLARIDCME-NIEFNRFDIGEIIEEVI 726

Query: 673 SLVQLYANEKRILIRTS----FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
             ++    EK I I+      +  N+  I      ++Q   N+++N+I + P    I + 
Sbjct: 727 DNMRFSMYEKNIDIKFVNNGPYYANLNPI------IEQAFTNLINNSIKYNPENSGIKVE 780

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                 +   ++++D G G++  + +     F +       +  G G+GL + + +VD +
Sbjct: 781 I-FDDIDYWKVQIKDEGPGISEQDKKYIFDRFKRGEG---KKVSGKGIGLAIVQKIVDIH 836

Query: 789 MGKFYIFSTP-AKGTLIEIIF 808
            G   +   P  KG++  +  
Sbjct: 837 EGSVGVEDNPDGKGSMFWVKL 857



 Score = 86.6 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 21/168 (12%), Positives = 52/168 (30%), Gaps = 6/168 (3%)

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
                ++       +             +  + R  + +++        I E   D +A+
Sbjct: 86  GEKKLLSITKSPIIDSCGNVEFVTCSAEDITEKREYETRLKENEELFREITENMQDMVAL 145

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
            ++ G  +    +   + GY  E++  K    F+  +    M     + L     + +  
Sbjct: 146 TDKYGYFVYAGPSHELVIGYKPENLTGKNVLDFVHPDDYEWMVEEYQQFLQTLNPKKV-- 203

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKL 571
                  +   + L  I   +            +  DI+E K+ +N+L
Sbjct: 204 EYRYLHSDGYYIWLETIGNVIHDDYGNVKRVVFSSRDITEHKELENEL 251



 Score = 43.5 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 47/135 (34%), Gaps = 17/135 (12%)

Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
            N+A +   G   +D+       FL +           ++         E+       E+
Sbjct: 29  ANKAHADFLGINKKDLENANLYDFLSKEEAESCVKGNKQVFKTKENTYTEEWVQNGKGEK 88

Query: 537 KLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
           KL  L I    +  S       + +  DI+E ++ + +L   +++  + + +  D +A  
Sbjct: 89  KL--LSITKSPIIDSCGNVEFVTCSAEDITEKREYETRLKENEELFREITENMQDMVALT 146

Query: 593 -----------SHEI 596
                      SHE+
Sbjct: 147 DKYGYFVYAGPSHEL 161


>gi|167820093|ref|ZP_02451773.1| two-component sensor kinase protein [Burkholderia pseudomallei 91]
          Length = 709

 Score =  300 bits (767), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 95/615 (15%), Positives = 207/615 (33%), Gaps = 27/615 (4%)

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
           +   L  ++      + E       +        +  VSS           +   +    
Sbjct: 97  QQQRLATLRMLLEKKQHELAATIELRKTEGFDAAQAIVSSDAGKIFMDRARVMVNEMEAT 156

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD---EGE 319
             ++     ++                G L      SF Y+  R     +A      E  
Sbjct: 157 V-QQQLRTLRDRARATRDIAIGVGLASGLLTLAVCVSFGYVMRRLLLVEAAAAHDLFEQR 215

Query: 320 NLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
            L   T+             G + + N     +T   +   +        L      +  
Sbjct: 216 ELLHVTLASIGDGVIATDVGGRITFFNRVAEEMTALCADAVVGQPIE-RVLTFRHAATQR 274

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
               P  +    R   +  A    +  +    L +        +   + +    +  +  
Sbjct: 275 VIDNPARVAVERRRTASLPAHTRFVGRSGGE-LPVDGNAAPTFDANGKLVGAVLVVRDVS 333

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
           +    + +  +        +EA    + ++ R+G I+  N    KLFGY   D++     
Sbjct: 334 ERERAEERFRLA-------VEAAPTAMIMVGRDGRIVLVNSQAEKLFGYARGDMIGHGID 386

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556
           + + +   +    +          + +   +   G  ++     + I +  +  S    +
Sbjct: 387 MLVPERFRAGHWAHRDAFFGNPDARPMGEGRDLFGLRRDGSEFPVEIGLNPITTSEGAFV 446

Query: 557 T--MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
              + DI+  K+ + +L    +   + +     F    SH+++ PL A+ G  ++++ + 
Sbjct: 447 LCSIADITARKRAELELRRRSEELARSNQDLEQFAYVASHDLQEPLRAVAGPLQLLQRRY 506

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
            G L + R  E+  +       +  +++DLL  S++  G++     PV  +  + EA+  
Sbjct: 507 QGQL-DARADEFIGHAVDGATRMQSLIDDLLSYSRV--GRLEDARRPVDCEHVLDEALRN 563

Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST-THTS 733
           +     E    +       +P +      +  +  N++ NAI F        I    HT 
Sbjct: 564 LSAAIRESGAQVTHD---PLPTVHGIEAQLVLLFQNLIGNAIKFRGKDRVARIHLEAHTR 620

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
           ++  +LRVRD G+G+     E+    F ++    +    GTGLGL L K +V+ + G+ +
Sbjct: 621 DDAWLLRVRDNGIGIDPQYFERIFLIFQRLH--TRREYPGTGLGLALCKRIVEHHGGRIF 678

Query: 794 IFSTPAKGTLIEIIF 808
           + S P +GT      
Sbjct: 679 VESEPGQGTTFSFTL 693



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/353 (9%), Positives = 76/353 (21%), Gaps = 19/353 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL----KRQNTWY 144
           +   G +  ++ +  K  G     MIG  +  +        +    D        +    
Sbjct: 356 VGRDGRIVLVNSQAEKLFGYARGDMIGHGIDMLVPERFRAGHWAHRDAFFGNPDARPMGE 415

Query: 145 GKTTL-WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
           G+       +G+    P+++   PI +    F        +             +R  ++
Sbjct: 416 GRDLFGLRRDGS--EFPVEIGLNPITTSEGAFV----LCSIADITARKRAELELRRRSEE 469

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
            +  ++  +  + V         +    P   ++ +     +  A +      +    + 
Sbjct: 470 LARSNQDLEQFAYVASHDLQEPLRAVAGPLQLLQRRYQGQLDARADEFIGHAVDGATRMQ 529

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYF---GTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
           S    L        +   +            L+N S    E  +   H  L         
Sbjct: 530 SLIDDLLSYSRVGRLEDARRPVDCEHVLDEALRNLSAAIRESGAQVTHDPLPTVHGIEAQ 589

Query: 321 LTPETVDKCPIPFFVYSHGN-----LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
           L     +                  L         L + +             +    + 
Sbjct: 590 LVLLFQNLIGNAIKFRGKDRVARIHLEAHTRDDAWLLRVRDNGIGIDPQYFERIFLIFQR 649

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
                  P                   I    E     TF          E  
Sbjct: 650 LHTRREYPGTGLGLALCKRIVEHHGGRIFVESEPGQGTTFSFTLSRPGADETR 702



 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/250 (9%), Positives = 56/250 (22%), Gaps = 13/250 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI----GDLLKRQNTWY 144
            D  G +   +    +     A  ++G  +  V    H      I       ++R+ T  
Sbjct: 232 TDVGGRITFFNRVAEEMTALCADAVVGQPIERVLTFRHAATQRVIDNPARVAVERRRTAS 291

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNR---VDNDPRALGKRLD 201
                  +  +   +P+D  A P +  N +  G     +V          +   L     
Sbjct: 292 LPAHTRFVGRSGGELPVDGNAAPTFDANGKLVGA--VLVVRDVSERERAEERFRLAVEAA 349

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
                +         V  +   +F            + +        H          P 
Sbjct: 350 PTAMIMVGRDGRIVLVNSQAEKLFGYARGDMIGHGIDMLVPERFRAGHWAHRDAFFGNPD 409

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
                            + +++  +     +  +       L      +     +     
Sbjct: 410 ARPMGEGR--DLFGLRRDGSEFPVEIGLNPITTSEGAF--VLCSIADITARKRAELELRR 465

Query: 322 TPETVDKCPI 331
             E + +   
Sbjct: 466 RSEELARSNQ 475


>gi|158333452|ref|YP_001514624.1| two-component sensor histidine kinase [Acaryochloris marina
           MBIC11017]
 gi|158303693|gb|ABW25310.1| two-component sensor histidine kinase [Acaryochloris marina
           MBIC11017]
          Length = 788

 Score =  300 bits (767), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 104/589 (17%), Positives = 205/589 (34%), Gaps = 46/589 (7%)

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
              +T+      E+     + +     +Q    +  +       +       + A   + 
Sbjct: 209 MAGVTTLIGQEDEKNFAREVEIGSQIFEQSVHYIAESDLIRTYIVDITKRKRMEAALKDS 268

Query: 319 ENLTPETVDK-CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
           E       ++       +   G L  AN + L        D I      +        + 
Sbjct: 269 ERRFKAIFNQTFQFSGLLNPDGILLEANQTALEFGGLHLDDVINTPLWETRWWSKSAETQ 328

Query: 378 NN-------------AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
           +                  V +  ++         L  +    +N + + F   + ++  
Sbjct: 329 SRLKNAVIEAAWGKFVRYEVDILGAEDKVATIDFSLKPVHDEVDNVVLLIFEGRDISDHK 388

Query: 425 PENMPQNGI----------------------EPEDVDTRINKRKMEIEVMQLCSILEATS 462
                                            E V+ +  +  ++  V    +++ A  
Sbjct: 389 QVESDLQRAHSELEQRVQQRTVELKQSNEHLRSEIVERQRAEAALQSSVATNRALINAMP 448

Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522
           D +   + +GI ++   A +     P E  L K       + T       + + L     
Sbjct: 449 DWMFRFSADGIFVNYKDAPNTKLPLPSEAFLGKSLYDVFPKATAQPFMECIEKTLDRHEM 508

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES 582
           Q  E        E     +      +   +     + DI+E K+ ++ + +A     + +
Sbjct: 509 QLFEYQF---DAEGNSF-VFEARFAVSAENEVMAVIRDITERKRAEDDIRNALNKERELN 564

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
             KS F+A  SHE RTPL  I+  +E +           R +++ + I +S + +  ++N
Sbjct: 565 ELKSRFVAMTSHEFRTPLATILSSAE-LLEHYGHKWDETRKLKHLSQIQQSVDHMTGLLN 623

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702
           D+L + K ESG +  +  P+ L E  +     +Q+      I+ R      +  +  D +
Sbjct: 624 DVLLLGKAESGNLAFNPVPMQLTEFCTGLAEELQITTQTHEIVCR--LQEQLTEVQMDEK 681

Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
            ++ I  N+LSNAI ++P GG I       S+ E IL+V+D G+G+   E       F +
Sbjct: 682 LLRHIFTNLLSNAIKYSPQGGIINFDLVFESD-EAILKVQDHGLGIPPSECSHVFNSFNR 740

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
              +      GTGLGL + K  VD + G+  + S    GT+  +  P+Y
Sbjct: 741 A--TNVGNISGTGLGLAIVKRSVDLHGGEITLTSQETVGTIFTVRLPIY 787



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/254 (11%), Positives = 79/254 (31%), Gaps = 31/254 (12%)

Query: 338 HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397
           +G + Y NP+ +           +            +  + N  + V +           
Sbjct: 182 NGKITYLNPAAVAQFPQLREMQTDHPIMAGVTTLIGQEDEKNFAREVEI----------- 230

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
                           +     +++     +       +    +  +  ++    +  +I
Sbjct: 231 ---------GSQIFEQSVHYIAESDLIRTYI------VDITKRKRMEAALKDSERRFKAI 275

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL-TEI 516
              T     ++N +GI+L  N+   +  G  ++D++  P       +  +     L   +
Sbjct: 276 FNQTFQFSGLLNPDGILLEANQTALEFGGLHLDDVINTPLWETRWWSKSAETQSRLKNAV 335

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM----HDISEWKQEKNKLS 572
           +     + +         E+K+ ++   +K +       + +     DIS+ KQ ++ L 
Sbjct: 336 IEAAWGKFVRYEVDILGAEDKVATIDFSLKPVHDEVDNVVLLIFEGRDISDHKQVESDLQ 395

Query: 573 HAKKIAEKESSHKS 586
            A    E+    ++
Sbjct: 396 RAHSELEQRVQQRT 409



 Score = 41.6 bits (96), Expect = 0.55,   Method: Composition-based stats.
 Identities = 20/141 (14%), Positives = 44/141 (31%), Gaps = 17/141 (12%)

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
           E  +++L S  E  ++ I   N  G I   N A    F    E     P           
Sbjct: 159 EAAIVRLASFPELFTNPIIESNLNGKITYLNPAAVAQFPQLREMQTDHPI---------- 208

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQE 567
                +T ++  +  +   +           +     +  +  S      + DI++ K+ 
Sbjct: 209 --MAGVTTLIGQEDEKNFAREVEI----GSQI-FEQSVHYIAESDLIRTYIVDITKRKRM 261

Query: 568 KNKLSHAKKIAEKESSHKSDF 588
           +  L  +++  +   +    F
Sbjct: 262 EAALKDSERRFKAIFNQTFQF 282


>gi|156977382|ref|YP_001448288.1| histidine kinase [Vibrio harveyi ATCC BAA-1116]
 gi|156528976|gb|ABU74061.1| hypothetical protein VIBHAR_06169 [Vibrio harveyi ATCC BAA-1116]
          Length = 1225

 Score =  300 bits (767), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 91/391 (23%), Positives = 167/391 (42%), Gaps = 18/391 (4%)

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQ-LCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
           + G     +  +  + ++  +  + L S+L+   + I I +     +  N+    +    
Sbjct: 545 RTGHLTRTIKRKEYETQIRQKQNKWLSSVLDQMPNKILISDENNKQILANKPFINML--- 601

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
                R      + +     +     E +  D   T E        +   +  + ++   
Sbjct: 602 ----SRCNVDKGITEQEREQVLDLTRECVRTDSEST-ETSLCSLGDKHYRVRQQTLLHPE 656

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
             +        DISE KQ++  L  +   A +    +  FLA VSHE+RTP+ A++G  E
Sbjct: 657 EGTQYRMTVFDDISELKQKETALKASNLKAMQAIEAREHFLAVVSHELRTPIAAMMGLME 716

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
           +++      +      E      +S   +   VND+LD SKI++ ++ L     ++ + +
Sbjct: 717 LLEQD----VERKESKELLKSAMQSAERLQLQVNDILDFSKIDANQLQLDVHKGNVYQEL 772

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIII 727
              +   +     K +    ++      ++A D   V QI  N+LSNA+ FT  G ++I+
Sbjct: 773 GATLRSFEKIIERKSLAFELNWTPTPHALVALDWLRVNQIINNLLSNAVKFTKEG-KVIV 831

Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
           S   + N ++  +V+DTG GM N +L    +PF Q   S   R  GTGLG+ + K++VD 
Sbjct: 832 SVHVSPN-QLEFKVQDTGCGMNNAQLATLFQPFVQGDKSTSRRFGGTGLGMSIVKSLVDI 890

Query: 788 NMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
             G   + S   +GT I +  P+   S P D
Sbjct: 891 MEGTIEVDSQTEQGTTITVRLPMI--SQPLD 919


>gi|148548845|ref|YP_001268947.1| PAS/PAC sensor hybrid histidine kinase [Pseudomonas putida F1]
 gi|148512903|gb|ABQ79763.1| PAS/PAC sensor hybrid histidine kinase [Pseudomonas putida F1]
          Length = 1210

 Score =  300 bits (767), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 123/686 (17%), Positives = 241/686 (35%), Gaps = 58/686 (8%)

Query: 149 LWPIEGTNLYVPIDLAALPI--YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
            W  +   + V  D AA P+  +  +  F G            D       +   +    
Sbjct: 295 QWLQKHPVMRVAADDAAAPLSYFDDSGHFRG---------ITADLLELIRLRTGLRFEVQ 345

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
                    +  K+                +  V +         D L+  +  L ++  
Sbjct: 346 RASGIADMVARLKDG---------------RADVIAALASAGKPGDDLQISRPYLESAYV 390

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
               +  +  +              +      +   +  R++P +S    E    +   +
Sbjct: 391 LVNHKDNNTLSSLEQL-----QGHRIAITRDSTMNAMLSRDYPKISWVETESAFYSMALL 445

Query: 327 DKCPIPFFVY---SHGNLFYANPSFLLLTKYKSVDD------IEIAGGLSTLLDAPKLSD 377
           +   +   +       +   +NP  ++ T   S         I  +  L ++LD   LS 
Sbjct: 446 NSGAVDAVITTLIDANHALASNPELVIRTSVGSEPANFAMATIAPSPALLSILDKALLSI 505

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
           +     V+  R                    + LA+  +           +    +  + 
Sbjct: 506 SPEELGVINNRWRGFGRHEDDNT-----KGYSRLALQVVLATVVLLLLALLWNARLRLQI 560

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
              +  +R +  ++  + ++L  T   + + +REG + S N +  +      + ++ +  
Sbjct: 561 RQRQCAERALNDQLAFMRALLNGTPHPMYVRDREGCLKSCNYSYLEAVQARSDQVIGRKL 620

Query: 498 --TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL-SLRIIIKKLPFSSCY 554
             ++F +      +     ++++       ++      +E  +   +      L      
Sbjct: 621 NDSLFADSEQARQIQADYQKVMAAGSPLIKDRPLRIKGRELTIYHWILPYRDSLGEVQGI 680

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DISE +Q   +L  AK+ A+  +  KS FLA +SHEIRTP+ A+IG  E+   + 
Sbjct: 681 IGGWIDISERRQLVMELRQAKQQADDANRAKSTFLATISHEIRTPMNAVIGMLELAVKRA 740

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                +            S   +L ++ D+LDI +IESG ++L  E V L   V     +
Sbjct: 741 DQGRVD---RSALELAHHSAKDLLGLIGDILDIVRIESGHLSLAPEVVDLAALVESVARI 797

Query: 675 VQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
               A +K + +    A      +L D    KQ+  N++SNAI FT  G Q+ I  +   
Sbjct: 798 FDGQARQKGLALEVQIAPAARCHVLLDPLRFKQVLSNLVSNAIKFTEHG-QVRICVSLLD 856

Query: 734 NEE-----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
           +       + L VRD+G+G+   +L++   PF Q     Q    GTGLGL + + + +  
Sbjct: 857 DGTSTPAVLELEVRDSGIGIHPDDLQRLFNPFIQANPHSQGARAGTGLGLAICRNLCEMM 916

Query: 789 MGKFYIFSTPAKGTLIEIIFPLYDTS 814
            G   + S    GT + +  PL    
Sbjct: 917 GGSLSMKSLEDVGTQVRLKMPLQRVD 942



 Score = 41.6 bits (96), Expect = 0.65,   Method: Composition-based stats.
 Identities = 28/252 (11%), Positives = 63/252 (25%), Gaps = 24/252 (9%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD----LLKRQNTWY- 144
           D  G LK  +    + +   + ++IG +L D S     +    I      ++   +    
Sbjct: 592 DREGCLKSCNYSYLEAVQARSDQVIGRKLND-SLFADSEQARQIQADYQKVMAAGSPLIK 650

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            +          +Y  I    LP      E  G  G  I              ++  ++ 
Sbjct: 651 DRPLRIKGRELTIYHWI----LPYRDSLGEVQGIIGGWI--DISERRQLVMELRQAKQQA 704

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
              +  K    +    +                  V  + E    + D  + ++  L  +
Sbjct: 705 DDANRAKSTFLATISHEIRTPMNA-----------VIGMLELAVKRADQGRVDRSALELA 753

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
             S+         I      +  +  +L     +    +             +G  L  +
Sbjct: 754 HHSAKDLLGLIGDILDIVRIESGHL-SLAPEVVDLAALVESVARIFDGQARQKGLALEVQ 812

Query: 325 TVDKCPIPFFVY 336
                     + 
Sbjct: 813 IAPAARCHVLLD 824


>gi|209548487|ref|YP_002280404.1| integral membrane sensor signal transduction histidine kinase
           [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209534243|gb|ACI54178.1| integral membrane sensor signal transduction histidine kinase
           [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 513

 Score =  300 bits (767), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 112/446 (25%), Positives = 191/446 (42%), Gaps = 11/446 (2%)

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
           L      +    + + + R      +A+     I  +   S A+                
Sbjct: 23  LSRTGGGEAVRQRELAILRRLVLFSSAALIAAPIGLSAVTSPAVALPAGVAMVCAAFLFS 82

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
             G               +         L+AT   +  ++  G + +      + F   +
Sbjct: 83  AVGSIALARQGSSAGIATQTAEDFF---LDATPGLVFFLDPHGSVATIGGRDRRDFLAWM 139

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS---TKEEKLLSLRIIIK 546
            D   + F   +  +   +    L  +   +  + ++           + +   LR+ + 
Sbjct: 140 RDPKGRGFLEQVHVSDRILFLQALDSLRRGEDAECVDLRIDRPSVARDQRQFAYLRMDMT 199

Query: 547 KLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
               +          + D+S  +Q + +  +    AE  +  KS FLA VSHE+RTPL A
Sbjct: 200 ARRDADGELAAVIAQLRDVSVEQQLRAEAQNRVADAESANDAKSRFLAAVSHELRTPLNA 259

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           I+GFS+++  + FG   N R  EY + +  SG  +L +VN +LD+SKIE+G+  L  EP 
Sbjct: 260 ILGFSDILIGEYFGKFENDRQREYVSLVRESGAHLLSVVNTMLDMSKIEAGRYELILEPF 319

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
            +  +V    S++ L A  K + + +     +  I+AD R+++QI +N++ NAI FT +G
Sbjct: 320 DIASSVKSCESMLALQAKTKGLTLTSRIQRGLGEIVADQRAIQQILINLVGNAIKFTEAG 379

Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
           G + +         + L V DTG+G+   +L    +PF QI N    R EGTGLGL L K
Sbjct: 380 GVVSVDAAARD-GILKLTVSDTGIGIAADKLALLGQPFVQIQNDYTRRFEGTGLGLSLVK 438

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIF 808
            +V  + G F I S P +GT+I I  
Sbjct: 439 GLVALHGGHFAIASQPGEGTIITIEI 464


>gi|119509382|ref|ZP_01628531.1| two-component sensor histidine kinase [Nodularia spumigena CCY9414]
 gi|119465996|gb|EAW46884.1| two-component sensor histidine kinase [Nodularia spumigena CCY9414]
          Length = 658

 Score =  300 bits (767), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 95/518 (18%), Positives = 200/518 (38%), Gaps = 25/518 (4%)

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEI 362
                 +         ++   T++   +    V   G++   N  F+ + +      +  
Sbjct: 154 EVSQLTTKEVELGISLSIFNSTLESTAVGIVAVNFQGDILSLNQKFIDMWQIPESLILSH 213

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
                      KL D  A     L     +     +       +       +  P    +
Sbjct: 214 KCPQFKAFFQNKLKDPEA--FSRLICEISSQCDFESYYILELKDGRTFAHQS-KPHYLGD 270

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
           +    + +     +   T+  +  + +   +  ++ E T   I ++ +   +   N AV 
Sbjct: 271 K---IVGRVWSIWDITQTQETEATLRLNEARFRTLAETTEANIFLL-QNTRLCYINPAVE 326

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
           +L GY  E++L        +         +              +      K+     L 
Sbjct: 327 RLTGYKKEELL-----NDFDLRRLIKSREHRQVRHQNAAANFEYQEMNLLKKDGTERWLA 381

Query: 543 IIIKKLPFSSCY------SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
             + KL     +       +T  DI+++K  +++L+ A + A++ S  ++ FLA V H+ 
Sbjct: 382 CAVAKLDGMLDFGGKPVELITGIDITDYKNVESELNQALEQAKQLSELRARFLAMVCHQF 441

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTPL  I+ FS  +  Q+       +     ++I+++   +  +++D L  +K E+ K+N
Sbjct: 442 RTPLN-IVSFSNSLLKQQVDKHTEQKIQPLLDHIEKAIEQISQMLDDTLFFAKAETAKIN 500

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716
              +P+ L       ++ + +  ++K I   + F         D + ++ I  N+L NAI
Sbjct: 501 FEPQPLDLVNLCDILVAQMHMSMSQKPINFVSQFY--CLMACVDPKLLEPILKNLLENAI 558

Query: 717 HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
            ++PS  ++        N +VI +V+D G+G+   + ++  +PF +   S      GTGL
Sbjct: 559 KYSPSNMRVDFMLACE-NGQVIFQVKDKGIGIPYKDQQRLFEPFYR--GSNVDNIPGTGL 615

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           GL + K +VD + G+  + S  A GT   ++ PL    
Sbjct: 616 GLSIIKTLVDLHGGQVSVESEVAVGTTFTVMLPLIKAE 653



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 36/275 (13%), Positives = 79/275 (28%), Gaps = 24/275 (8%)

Query: 332 PFFVYSHGNLFYANPSFLLLTKYKSVDDIE---IAGGLSTLLDAPKLSDNNAIKPV--ML 386
            F +  +    Y N +   +T+Y   + +        +   L       +          
Sbjct: 37  AFCLGENQQFIYVNDATCKMTEYSREELLSLRLHDIDIDWSLHNWSDIKSQDYSTFKSRY 96

Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG--------IEPEDV 438
                        +  ++   +            A                    + E  
Sbjct: 97  RAKGGRIFLVEIAMFYVENQGQKFGCAVVRDKSDAIIELSVQTWIDELRNAKNYFQQEVS 156

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
                + ++ I +    S LE+T+ GI  +N +G ILS N+    ++  P   IL     
Sbjct: 157 QLTTKEVELGISLSIFNSTLESTAVGIVAVNFQGDILSLNQKFIDMWQIPESLILSHKCP 216

Query: 499 VF--LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYS 555
            F    QN       +   I  +  +   E   +   K+ +  + +     L        
Sbjct: 217 QFKAFFQNKLKDPEAFSRLICEISSQCDFESYYILELKDGRTFAHQSKPHYLGDKIVGRV 276

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
            ++ DI++ ++ +  L        + +  +   LA
Sbjct: 277 WSIWDITQTQETEATL--------RLNEARFRTLA 303


>gi|300024973|ref|YP_003757584.1| PAS/PAC sensor hybrid histidine kinase [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299526794|gb|ADJ25263.1| PAS/PAC sensor hybrid histidine kinase [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 651

 Score =  300 bits (767), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 100/406 (24%), Positives = 173/406 (42%), Gaps = 20/406 (4%)

Query: 420 KANQFPENMPQNGIEPEDVDTRI-NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
                      +G E + ++       +      Q   +L+   D +   + +G ++  N
Sbjct: 84  DRGAIGRADDLSGKEADVLEDAQDAHWEFADRASQYRELLDVQRDFVVRRSADGRLVFAN 143

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
           RA  + FG   E +L   F   +                         ++      +  +
Sbjct: 144 RAFCEAFGVRSEALLGSKFEPPVLAEDDCSEAVAYD--------CRGAQLVHTQKGQRWI 195

Query: 539 LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
                 IK    S  +     DI+  +  + +L  A+  AE  S  KS FLA +SHEIRT
Sbjct: 196 AWDFQEIKGQEGSVEFQGVGRDITVERGVERELKDARNQAEMASRAKSRFLATMSHEIRT 255

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
           P+  I+G   ++++ +     +      A  ++ S   +L++V+D+LD SKIE+GK+ L 
Sbjct: 256 PMNGILGMISLMRDTQL----DAEQRTCARIVEDSTRALLNLVDDILDFSKIEAGKLELG 311

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIH 717
             P SL   V++A+ L+   A  KR+   ++  N++P  ++ D   V+QI LN+LSNAI 
Sbjct: 312 SRPFSLKMCVAQAMQLLAPSAAAKRLSFTSTLTNDVPEWVIGDEMRVRQIVLNLLSNAIK 371

Query: 718 FTPSGGQ-IIISTTHTSNE-----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           FT +GG  + +S    + +     E+ ++V DTGVG+    +    + F Q   +     
Sbjct: 372 FTETGGIGVCVSLAPENGKSGGDCEIAIKVTDTGVGLPAEFISHMFQEFEQSSITMARHP 431

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
            GTGLGL ++K +  A  G     S   +G     +        P 
Sbjct: 432 GGTGLGLAISKRLAQAMGGDILAESGADRGASFTAVLRFGIAEQPE 477



 Score = 44.6 bits (104), Expect = 0.076,   Method: Composition-based stats.
 Identities = 21/173 (12%), Positives = 51/173 (29%), Gaps = 18/173 (10%)

Query: 282 QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGN 340
           +  +       + +     E     +       F +  +   E +D         S  G 
Sbjct: 79  RAAEMDRGAIGRADDLSGKEADVLEDAQDAHWEFADRASQYRELLDVQRDFVVRRSADGR 138

Query: 341 LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400
           L +AN +F      +S   +          + P L++++  + V         +      
Sbjct: 139 LVFANRAFCEAFGVRSEALLGSK------FEPPVLAEDDCSEAVAYDCRGAQLVHTQKGQ 192

Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
             I W+           F++      ++   G+  +    R  +R+++    Q
Sbjct: 193 RWIAWD-----------FQEIKGQEGSVEFQGVGRDITVERGVERELKDARNQ 234



 Score = 43.1 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 18/190 (9%), Positives = 42/190 (22%), Gaps = 23/190 (12%)

Query: 46  HDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVR----------FTWNIDAHGYL 95
               ++      +  S    + L+      ++   R  +          F     A G L
Sbjct: 80  AAEMDRGAIGRADDLSGKEADVLEDAQDAHWEFADRASQYRELLDVQRDFVVRRSADGRL 139

Query: 96  KEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGT 155
              +    +  G  +  ++G +       +  + +         +      T        
Sbjct: 140 VFANRAFCEAFGVRSEALLGSKFE---PPVLAEDDCSEAVAYDCRGAQLVHT-------Q 189

Query: 156 NLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHS 215
                I      I  +      F+G G      V+       K    +       K    
Sbjct: 190 KGQRWIAWDFQEIKGQEGSVE-FQGVG--RDITVERGVERELKDARNQAEMASRAKSRFL 246

Query: 216 SVEKEKYDIF 225
           +    +    
Sbjct: 247 ATMSHEIRTP 256


>gi|220907505|ref|YP_002482816.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219864116|gb|ACL44455.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 882

 Score =  300 bits (767), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 119/646 (18%), Positives = 233/646 (36%), Gaps = 79/646 (12%)

Query: 233 HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL 292
              M + V+++         +       L  +  +   E ++   I        Q    L
Sbjct: 99  LTAMVSMVTAIELVPLIPKALALPSPAQLEQANRNLQAEIQERLKIEAQLR---QIQNQL 155

Query: 293 QNNSKESFEYLSHRNHPSLSAYFDEGEN--LTPETVDKCPIPFFVYSHG-NLFYANPSFL 349
           +   +E    L   N        +      L    ++  PI   V+         N +  
Sbjct: 156 EQRVEERTAALVKANEQLQQEIRERQSAHVLLDTLINNAPIGIAVWDEQLRYVQLNQALA 215

Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
            +        +     ++ LL     +   +++ V L R++      ++        ++ 
Sbjct: 216 DMNGLPL--ALHAGKTIAELLPGVSTNVTESLRQV-LTRAEPLLQQEASGETPAAPGKQR 272

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL------CSILEATSD 463
           +  +++ P                  E       +R +      L       +IL   + 
Sbjct: 273 NWLVSYFPIHLPGGLTWAGAICEEITERKQREAAQRILASVSAALVTSLDEQTILTNLTQ 332

Query: 464 GIA----------IINREG---IILSTNR--------AVSKLFGYPVEDILRKPFTVFLE 502
            +           I + +G    ++  +R        +  + F  P    +  P    +E
Sbjct: 333 LLVPALADYCLFDIFSPQGSLERLVWHHRDLPQSLWFSQEQNF-IPAPSNIHHPILQTIE 391

Query: 503 QNT----PSVMNHYLTEILS----------LDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
           +        V   +L  I +            +R  L        ++   L+L +     
Sbjct: 392 RRQPLLLQEVNPDWLDRIAAPSQQSAFPWQSQVRSLLILPLSARNRQLGALTLALTDASQ 451

Query: 549 PFSSCY-SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
            F +        D++         +     A++ +  K +FLA +SHE+R+PL  I+G++
Sbjct: 452 RFYNTIDLSLAEDLAYRAALALDNAQLYYHAQEANRIKDEFLAVLSHELRSPLNPILGWA 511

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
           +++ N+R   +  P   +  + I+R+  + + +++DLLD+S+I  GK++L    V L   
Sbjct: 512 KILLNRR---VDEPTTRQAISIIERNAKIQIQLIDDLLDVSRILKGKLSLTITDVDLKAV 568

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727
           ++ AI  V+L A  K+I I+T F      +  D+  ++Q+  N+LSNAI FTPSGG+I +
Sbjct: 569 ITAAIETVRLAAEAKQIQIQTRFLAEEGLVRGDVGRLQQVIWNLLSNAIKFTPSGGRIEV 628

Query: 728 STTHTSNE---------------------EVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
                +                        + + V DTG G+T   L      F Q  +S
Sbjct: 629 RLESGAQGSEGLNPASPSQLFPVLESASPSIKISVIDTGKGITPEFLPYIFDYFRQADSS 688

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA--KGTLIEIIFPL 810
              +  G GLGL +A+ +++ + G     S P   KG    +  PL
Sbjct: 689 TTRKFGGLGLGLAIARHIIELHGGTIAAES-PGEAKGATFTVHLPL 733



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 29/303 (9%), Positives = 72/303 (23%), Gaps = 21/303 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTW-- 143
            W  D      ++++ L    G       G  + ++   +  +    +  +L R      
Sbjct: 200 VW--DEQLRYVQLNQALADMNGLPLALHAGKTIAELLPGVSTNVTESLRQVLTRAEPLLQ 257

Query: 144 ---YGKTTLWPIEGTNLYVPIDLAALPIYSRNR-EFSGFRGFGIVHVNRVDNDPRALGKR 199
               G+T   P         + ++  PI+      ++G     I           A  + 
Sbjct: 258 QEASGET---PAAPGKQRNWL-VSYFPIHLPGGLTWAGA----ICEEITERKQREAAQRI 309

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
           L    + L       + +      +    +      + +   SL     H  D+ ++  +
Sbjct: 310 LASVSAALVTSLDEQTILTNLTQLLVPALADYCLFDIFSPQGSLERLVWHHRDLPQSLWF 369

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
               +   +           + +           +              P          
Sbjct: 370 SQEQNFIPAPSNIHHPILQTIERRQPLLLQEVNPDWLDRIAAPSQQSAFP--WQSQVRSL 427

Query: 320 NLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
            + P +     +         L  A+  F         +D+     L+            
Sbjct: 428 LILPLSARNRQLGAL---TLALTDASQRFYNTIDLSLAEDLAYRAALALDNAQLYYHAQE 484

Query: 380 AIK 382
           A +
Sbjct: 485 ANR 487


>gi|218778427|ref|YP_002429745.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
            alkenivorans AK-01]
 gi|218759811|gb|ACL02277.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
            alkenivorans AK-01]
          Length = 1301

 Score =  300 bits (767), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 100/655 (15%), Positives = 221/655 (33%), Gaps = 68/655 (10%)

Query: 187  NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP---HLRMKNKVSSL 243
                   +   +    +   L E           K               L     +   
Sbjct: 547  VAARIRLQETIQENQARQRALLEGLPDLLFRMDRKGRYLFISDKAGEVMGLTPGQGIGKT 606

Query: 244  TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINL-NQYTKKQYFGTLQNNSKESFEY 302
                 + +   +     L     ++   + +               F  + +  K+    
Sbjct: 607  HRELGYPEYQAEFLDKGLNQVFRTNAGCESELVVTGTHPVKVYNVRFVPVWDAKKQLTSV 666

Query: 303  LSHRNHPSLSAYFDEG-ENLTPETVDKCPIPFFVYSHG------NLFYANPSFLLLTKYK 355
            L      +     +   ++L  E +D   +   + +             NP+F  +T  K
Sbjct: 667  LGICRDITEHRKVERDFKSLFEEMMDGFALHEIICNDDGEPVDYRFLAVNPAFEKMTGLK 726

Query: 356  SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
              D +        +L+   L++ + I+           IA       ++ +        +
Sbjct: 727  GEDILGK-----RVLEVFPLTEKSWIEAYGKVALTGEPIAFENYSVALERH---FYVTAY 778

Query: 416  IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
             P               I  +  + +  +        +L   +E + + I I + +G I 
Sbjct: 779  RPAPG--------QFACIFADVTENKKTEAD----RERLIQAVEQSGETIVITDTDGNIQ 826

Query: 476  STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
              N +  ++ GY  E+++ +   +            ++ + +S    +T E   +  T++
Sbjct: 827  YVNPSFERVSGYSREEVIGRNPNILKSGEQDEAFYAHMWQTISSG--RTWEGRMVNKTQD 884

Query: 536  EKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
                  +  I  +   +     Y     DI+E  Q + +L+ ++K+              
Sbjct: 885  GGFFIEKASISPVMDKNGEITNYIGVKRDITEEIQLEERLAQSQKM-----EAIGTLAGG 939

Query: 592  VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
            ++H+    LT I GF+E++K        N     +   + ++     ++V  +L  S+ +
Sbjct: 940  IAHDFNNILTPIFGFTEMLKEDI---PPNSPMQNHVEEVFQAALRARELVKQILTFSRQD 996

Query: 652  SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
            + ++     P+ L   + EA+ L++  A    I  +         ++AD   + QI +N+
Sbjct: 997  NQEV----RPLRLQPIIKEAMKLLRG-AIPTTIGFQLDIDPKCGIVMADPTQIHQIVMNL 1051

Query: 712  LSNAIHFTP-SGGQIIIST-------------THTSNEEVILRVRDTGVGMTNYELEKAM 757
             +NA H    +GG + ++                +  +  +L V DTG+G+ +  LE+  
Sbjct: 1052 ATNAYHAMEMTGGALTVTLKESAVSSNDPSFPELSGGKYAVLTVSDTGIGLEDKLLERIF 1111

Query: 758  KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
             P+         RG+GTGLGL +   +V +  G    +S P +GT   I  P+ +
Sbjct: 1112 DPYYTTKP----RGKGTGLGLSVVHGIVTSAQGAVRAYSEPGRGTKFSIYLPVKE 1162



 Score =  118 bits (295), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 61/524 (11%), Positives = 131/524 (25%), Gaps = 51/524 (9%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMR-----LCDVSDILHIDPNNH--IGDLLKRQN 141
           IDA G L E++    + +G    +M+G          + +     P +      +L+   
Sbjct: 317 IDAFGNLTEVNPSACEILGLSREEMLGQNLYKFDWNVILESGEAMPPDQSPARKVLETGE 376

Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
                           Y  I L+ +P +S   E        ++             ++  
Sbjct: 377 PVGDIVRGVYNPKLKEYRWIQLSIVPRFSHGGEHLDQVQ-AVMSDITEMRRSEEFLRKRV 435

Query: 202 KKFS---HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
            +      L  + +     ++E      +  P          +S++            + 
Sbjct: 436 SELQCLFGLGRLVETPGITQEEIIRGCVELIPHGLRHSSMAWASISFEGQTYATENYKDT 495

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR-----NHPSLSA 313
              +++      E+         +               +    L+ R         L  
Sbjct: 496 ALKISTPIEVEGERLGVIEAGYLETPPLHDGEAFLREEADLLHALAERLGRVAARIRLQE 555

Query: 314 YFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
              E +      ++  P   F +   G   + +     +            G     L  
Sbjct: 556 TIQENQARQRALLEGLPDLLFRMDRKGRYLFISDKAGEVMGLTPGQ---GIGKTHRELGY 612

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
           P+       K +           +   +                     +   +     G
Sbjct: 613 PEYQAEFLDKGLNQVFRTNAGCESELVVTGTH----PVKVYNVRFVPVWDAKKQLTSVLG 668

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGI----AIINREG-----IILSTNRAVSK 483
           I  +  + R  +R          S+ E   DG      I N +G       L+ N A  K
Sbjct: 669 ICRDITEHRKVERD-------FKSLFEEMMDGFALHEIICNDDGEPVDYRFLAVNPAFEK 721

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           + G   EDIL K           S +  Y    L+ +                      +
Sbjct: 722 MTGLKGEDILGKRVLEVFPLTEKSWIEAYGKVALTGEPIAFENYSVALERH------FYV 775

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
              + P    ++    D++E K+ +      ++   +      +
Sbjct: 776 TAYR-PAPGQFACIFADVTENKKTEAD----RERLIQAVEQSGE 814



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 53/474 (11%), Positives = 132/474 (27%), Gaps = 51/474 (10%)

Query: 85   FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ---- 140
              + +D  G    IS++  + +G    + IG    ++    +        + L +     
Sbjct: 574  LLFRMDRKGRYLFISDKAGEVMGLTPGQGIGKTHRELGYPEYQ------AEFLDKGLNQV 627

Query: 141  -NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199
              T  G  +   + GT+     ++  +P++   ++ +   G  I              K 
Sbjct: 628  FRTNAGCESELVVTGTHPVKVYNVRFVPVWDAKKQLTSVLG--ICRDITEHRKVERDFKS 685

Query: 200  LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
            L      +            +         P  +  +    +         +D+L     
Sbjct: 686  L--FEEMMDGFALHEIICNDDG-------EPVDYRFLAVNPAFEKMTGLKGEDILGKRVL 736

Query: 260  PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN------SKESFEYLSHRNHPSLSA 313
             +    E S  E      +       + Y   L+ +           ++       + + 
Sbjct: 737  EVFPLTEKSWIEAYGKVALTGEPIAFENYSVALERHFYVTAYRPAPGQFACIFADVTENK 796

Query: 314  YFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
              +       + V++      +    GN+ Y NPSF  ++ Y   + I     +      
Sbjct: 797  KTEADRERLIQAVEQSGETIVITDTDGNIQYVNPSFERVSGYSREEVIGRNPNI----LK 852

Query: 373  PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
                D      +    S         R+     +               ++  E     G
Sbjct: 853  SGEQDEAFYAHMWQTISSGRTW--EGRMVNKTQDGG-FFIEKASISPVMDKNGEITNYIG 909

Query: 433  IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
            ++ +  +    + ++  +  ++ +I    + GIA           N  ++ +FG+     
Sbjct: 910  VKRDITEEIQLEERL-AQSQKMEAI-GTLAGGIA--------HDFNNILTPIFGFTEMLK 959

Query: 493  LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
               P    ++ +   V    L            + +T      +++  LR+   
Sbjct: 960  EDIPPNSPMQNHVEEVFQAALRA-----RELVKQILTFSRQDNQEVRPLRLQPI 1008



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 18/144 (12%), Positives = 46/144 (31%), Gaps = 11/144 (7%)

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE---- 502
           ++I       + +  S G+ +I+  G +   N +  ++ G   E++L +    F      
Sbjct: 296 LKISQTSYRHLFDTMSQGVLVIDAFGNLTEVNPSACEILGLSREEMLGQNLYKFDWNVIL 355

Query: 503 --QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-----YS 555
                         ++L            + + K ++   +++ I               
Sbjct: 356 ESGEAMPPDQSPARKVLETGEPVGDIVRGVYNPKLKEYRWIQLSIVPRFSHGGEHLDQVQ 415

Query: 556 LTMHDISEWKQEKNKLSHAKKIAE 579
             M DI+E ++ +  L       +
Sbjct: 416 AVMSDITEMRRSEEFLRKRVSELQ 439



 Score = 68.5 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 35/363 (9%), Positives = 91/363 (25%), Gaps = 37/363 (10%)

Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
           +  +        + +     +     +      K + +  +Q +    F +         
Sbjct: 356 ESGEAMPPDQSPARKVLETGEPVGDIVRGVYNPKLKEYRWIQLSIVPRFSHGGEHLDQVQ 415

Query: 312 SAYFD--EGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEI-AGGLST 368
           +   D  E          +      ++  G L                + I      +  
Sbjct: 416 AVMSDITEMRRSEEFLRKRVSELQCLFGLGRLV-------ETPGITQEEIIRGCVELIPH 468

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE------KAN 422
            L    ++  +       Y ++     A      I+   E    +     E         
Sbjct: 469 GLRHSSMAWASISFEGQTYATENYKDTALKISTPIEVEGERLGVIEAGYLETPPLHDGEA 528

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIE----VMQLCSILEATSDGIAIINREGIILSTN 478
              E         E +     + +++        +  ++LE   D +  ++R+G  L  +
Sbjct: 529 FLREEADLLHALAERLGRVAARIRLQETIQENQARQRALLEGLPDLLFRMDRKGRYLFIS 588

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH-YLTEILSLDLRQTLEKITLGSTK--- 534
               ++ G      + K           +      L ++   +     E +  G+     
Sbjct: 589 DKAGEVMGLTPGQGIGKTHRELGYPEYQAEFLDKGLNQVFRTNAGCESELVVTGTHPVKV 648

Query: 535 -EEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
              + + +    K+L           DI+E ++ +       +      +          
Sbjct: 649 YNVRFVPVWDAKKQLTS---VLGICRDITEHRKVERDFKSLFEEMMDGFAL--------- 696

Query: 594 HEI 596
           HEI
Sbjct: 697 HEI 699



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/200 (10%), Positives = 53/200 (26%), Gaps = 7/200 (3%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147
             D  G ++ ++    +  G    ++IG     +      +    H+   +    TW G+ 
Sbjct: 819  TDTDGNIQYVNPSFERVSGYSREEVIGRNPNILKSGEQDEAFYAHMWQTISSGRTWEGRM 878

Query: 148  TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                 +G   +     +  P+  +N E + +   G+      +        +  K  +  
Sbjct: 879  VNKTQDGG--FFIEKASISPVMDKNGEITNY--IGVKRDITEEIQLEERLAQSQKMEAIG 934

Query: 208  HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
                            IF            N    +  +           +  +      
Sbjct: 935  TLAGGIAHDFNNILTPIFGFTEMLKEDIPPNS--PMQNHVEEVFQAALRARELVKQILTF 992

Query: 268  SLPEQEDFHTINLNQYTKKQ 287
            S  + ++   + L    K+ 
Sbjct: 993  SRQDNQEVRPLRLQPIIKEA 1012


>gi|187933765|ref|YP_001886045.1| sensory transduction histidine kinase [Clostridium botulinum B str.
           Eklund 17B]
 gi|187721918|gb|ACD23139.1| sensory transduction histidine kinase [Clostridium botulinum B str.
           Eklund 17B]
          Length = 664

 Score =  300 bits (767), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 83/374 (22%), Positives = 164/374 (43%), Gaps = 5/374 (1%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +    K      +L   LE  +D  AI   +G         +K+ G+  E+++    T  
Sbjct: 259 KTELNKRSESEKELELFLETATDLCAIAREDGYFAKVTDNWTKVLGWSKEELINMKCTDL 318

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
           + ++    +   +         + +  I     K  +   +      +     + +T  D
Sbjct: 319 IHKDDLPRIYKLIKLAQGYSKWKYVGFIDKCLCKNGEYRIIEWNWSYINGGKTFIMTGKD 378

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK---NQRFGP 617
           I+ + +   + +   + A    S K+ F A +SHE +TPL  I+  +++++    +    
Sbjct: 379 ITNYNKLALE-NKRLENAIALESLKTQFFANLSHEFKTPLNIILTTAQLMESYIKKFDDM 437

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
           L      +Y   + ++   +L +VN+L+DI+KI+ G   ++    ++   + E +  V  
Sbjct: 438 LEKQSMSKYVRGLKQNSYRLLKLVNNLIDITKIDGGHYKVNMVNKNIVNVIEEIVLSVAE 497

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-SNEE 736
           Y   K   I          +  D   +++I LN++SNA+ +T   G I ++ +    + E
Sbjct: 498 YTKNKERNIIFDTDEEEIILACDPEKIERIILNLVSNALKYTEKDGIIKVNISTNLHDNE 557

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           V + V+D G+G+     EK  + F Q+ NS     EG+G+GL L K++V+ + GK +I S
Sbjct: 558 VTISVKDNGIGIPKEYKEKIFERFKQVENSLHKNYEGSGIGLSLVKSIVEMHEGKIWINS 617

Query: 797 TPAKGTLIEIIFPL 810
              +GT I    P+
Sbjct: 618 EEDEGTEIIFTLPI 631


>gi|290476822|ref|YP_003469733.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA, regulates respiration and fermentation,
           senses oxidized quinones [Xenorhabdus bovienii SS-2004]
 gi|289176166|emb|CBJ82971.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA, regulates respiration and fermentation,
           senses oxidized quinones [Xenorhabdus bovienii SS-2004]
          Length = 763

 Score =  300 bits (767), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 87/395 (22%), Positives = 170/395 (43%), Gaps = 16/395 (4%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
             +  +    +  + ++ E       +  +E + + L S L+A+ D +   N        
Sbjct: 106 DREKAEKTHLVLLDKLKSEMEHREKTQSALEQQSILLRSFLDASPDLVYYRNENNEFSGC 165

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
           NRA+  L G   + ++    T   ++   S +     ++   ++  T E+  +     + 
Sbjct: 166 NRAMELLTGKSEKQLIGLTPTEVYDKEVASKVMETDEKVFRHNVSLTYEQWLVYPDGRKA 225

Query: 538 LLSLRIII--KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
              LR +    ++           DI+E K+ ++ L +        S  K+ F++ +SHE
Sbjct: 226 CFELRKVPFYDRVGKRHGLMGFGRDITERKRYQDALEN-------ASRDKTTFISTISHE 278

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           +RTPL  I+G S ++ +    P        Y   I  S   + +I ND++++ KIE  K 
Sbjct: 279 LRTPLNGIVGLSRILMDTDLTP----EQCNYLKTIHVSAITLGNIFNDIIELDKIERRKT 334

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSN 714
            L  + +     +++  +L  L A  K I         +P +IL D   ++QI  N++ N
Sbjct: 335 QLDNQQIDFTGFMADLENLSGLLAQPKGIRFVLEPKLPLPAKILTDGTRLRQILWNLIGN 394

Query: 715 AIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ-IPNSQQIRGEG 773
           A+ FT  G +I +       E ++  V D+G+G+ + ELEK    + Q   ++      G
Sbjct: 395 AVKFTQKG-EIRVRIWREEGERLLFEVTDSGIGIPSSELEKIFAMYYQVTDSAGGRPATG 453

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           TG+GL ++K +  +  G   + ST  +G+   +  
Sbjct: 454 TGIGLAVSKRLAQSMGGDIVVESTVDQGSCFTLSI 488


>gi|196228678|ref|ZP_03127544.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
 gi|196226959|gb|EDY21463.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
          Length = 891

 Score =  300 bits (767), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 95/641 (14%), Positives = 214/641 (33%), Gaps = 60/641 (9%)

Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEK-EKYDIFSQQSPP----PHLRMKNKVSSLTEYY 247
                +  ++++  L E       V     +              + R +    S+ +  
Sbjct: 143 AEEALRASEERYRVLFERNPVPMWVYDCTTWRFLQVNEAAIAHYGYSREEFMALSVLDLR 202

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
             +D +L  E      +++            +   +  +     ++     +   ++   
Sbjct: 203 PGEDAILLGESRSNHRNDDPLTRGTWRHRKKDGTIFFVEVVTQPIK--YGTTKARIAQAL 260

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDIEIAGGL 366
             +     ++        VD       +    ++  Y N +F  L  Y   +   + GG 
Sbjct: 261 DITERKVAEKELTRIKMAVDFSTDAIAILDDASISVYHNRAFEELLGYTPEELNAVEGGP 320

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
             L    ++ D                  AS     IQ        +        +    
Sbjct: 321 RALFVHQQVVDEIFSSVAQSGSWAGDAYLASKSNKPIQ--------LFVRVNAALDGAGR 372

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
            +  + +  +  + +  + K+E +     ++L+   D I + +  G I   N++  ++FG
Sbjct: 373 IITTSIVCTDLREQKRAQGKIEEQ----AALLDHAQDAIIVHDLAGRIKYWNKSARRVFG 428

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
           +   ++  +     L           +  + +      L++      +++K + +     
Sbjct: 429 WTPAEVTGRRVQDILYSTPEPFDEAMVELLRTGSWTGDLKQ----QNRDDKEVLIEGRWT 484

Query: 547 KLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
            +               DI+  K+ +++   A+++              ++H++   L  
Sbjct: 485 LVRDEFGDPKSVLSINTDITAKKKLESQFLRAQRM-----ESIGTLAGGIAHDLNNVLGP 539

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           II   ++ +      + +P+ +E    +  S     D+V  +L  ++   G+  L    V
Sbjct: 540 IIMAVDLFR----LKMTDPQDLELLETVSVSARRGADMVKQVLSFARGLEGQRTL----V 591

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
              + + E   + +     K I +  + A +   +L D   + Q+ LN+  NA    P G
Sbjct: 592 RPVQLLKEVQRIARDTFP-KFISVDITTAEDTWSLLGDPTQLHQVLLNLCVNARDAMPQG 650

Query: 723 GQIIIST--------------THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
           G++ ++                      V+L V D+G GMT   +EK  +PF        
Sbjct: 651 GRLTLNACNQRIDDHFAAMHPEARPGPHVVLEVADSGTGMTPDVIEKIFEPFFTTK---- 706

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             G+GTGLGL    A+V ++ G   + S P KGT   +  P
Sbjct: 707 EVGKGTGLGLSTTLAIVRSHNGFVTVESHPGKGTKFRVHLP 747



 Score =  103 bits (256), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/430 (11%), Positives = 124/430 (28%), Gaps = 53/430 (12%)

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS-----PPPHLRMKNKVSS 242
             ++D   L + L +        +       +        +        P+    + +  
Sbjct: 15  DSEDDALLLVEALSRGGFAPDWKRVVDEEGMRAALRSREWEIVFCDYNLPNFNAPSAIRV 74

Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302
           L E       ++ +       + ES      D+   N  +         L+ +     + 
Sbjct: 75  LRECGCDAPIIIVSGAVGEDVAVESLRQGANDYLPKNNLRRLVPAVERELRESEARRGQQ 134

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG--NLFYANPSFLLLTKYKSVD-- 358
           LS              E       ++ P+P +VY          N + +    Y   +  
Sbjct: 135 LSEAKKHFAEEALRASEERYRVLFERNPVPMWVYDCTTWRFLQVNEAAIAHYGYSREEFM 194

Query: 359 ---DIEIAGGLSTLLDA-----PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
               +++  G   +L        +  D          + D T          I++     
Sbjct: 195 ALSVLDLRPGEDAILLGESRSNHRNDDPLTRGTWRHRKKDGTIFFVEVVTQPIKY----- 249

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470
                              +     +  + ++ ++++     ++   ++ ++D IAI++ 
Sbjct: 250 --------------GTTKARIAQALDITERKVAEKEL----TRIKMAVDFSTDAIAILDD 291

Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530
             I +  NRA  +L GY  E++               V++   + +       +      
Sbjct: 292 ASISVYHNRAFEELLGYTPEELNAVEGGPRALFVHQQVVDEIFSSVAQSG---SWAGDAY 348

Query: 531 GSTKEEKLLSLRIIIKKLPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
            ++K  K + L + +      +       +   D+ E K+ + K+     + +       
Sbjct: 349 LASKSNKPIQLFVRVNAALDGAGRIITTSIVCTDLREQKRAQGKIEEQAALLDHAQD--- 405

Query: 587 DFLARVSHEI 596
              A + H++
Sbjct: 406 ---AIIVHDL 412



 Score = 68.1 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 33/368 (8%), Positives = 94/368 (25%), Gaps = 23/368 (6%)

Query: 94  YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT-TLWPI 152
              +++E      G    + + + + D+                +  +     T      
Sbjct: 174 RFLQVNEAAIAHYGYSREEFMALSVLDLRPGEDAILLGESRSNHRNDDPLTRGTWRHRKK 233

Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212
           +GT  +  +++   PI        G     I     +     A  K L +    +     
Sbjct: 234 DGTIFF--VEVVTQPIK------YGTTKARIAQALDITERKVA-EKELTRIKMAVDFSTD 284

Query: 213 GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ 272
             + ++     ++  ++    L    +  +  E       V +     + +S   S    
Sbjct: 285 AIAILDDASISVYHNRAFEELLGYTPEELNAVEGGPRALFVHQQVVDEIFSSVAQSGSWA 344

Query: 273 EDFHTINLNQYTKKQYFG--TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330
            D +  + +    + +       + +                             +D   
Sbjct: 345 GDAYLASKSNKPIQLFVRVNAALDGAGRIITTSIVCTDLREQKRAQGKIEEQAALLDHAQ 404

Query: 331 IPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389
               V+   G + Y N S   +  +   + +        L   P+  D   ++ +     
Sbjct: 405 DAIIVHDLAGRIKYWNKSARRVFGWTPAE-VTGRRVQDILYSTPEPFDEAMVELLRTGSW 463

Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449
                         Q   +  + +        ++F +      I  +    +  + +  +
Sbjct: 464 TGDL--------KQQNRDDKEVLIEGRWTLVRDEFGDPKSVLSINTDITAKKKLESQF-L 514

Query: 450 EVMQLCSI 457
              ++ SI
Sbjct: 515 RAQRMESI 522



 Score = 45.8 bits (107), Expect = 0.032,   Method: Composition-based stats.
 Identities = 25/250 (10%), Positives = 59/250 (23%), Gaps = 17/250 (6%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D  G +K  ++   +  G    ++ G R+ D+      +P +     L R  +W G    
Sbjct: 411 DLAGRIKYWNKSARRVFGWTPAEVTGRRVQDILYS-TPEPFDEAMVELLRTGSWTGDLKQ 469

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
              +  +  V I+     +     +        I           +   R  +  S    
Sbjct: 470 QNRD--DKEVLIEGRWTLVRDEFGDPKSV--LSINTDITAKKKLESQFLRAQRMESIGTL 525

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
                  +      I              +   L E        +   +   +  +  S 
Sbjct: 526 AGGIAHDLNNVLGPIIMAVDLFRLKMTDPQDLELLETV-----SVSARRGADMVKQVLSF 580

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV--- 326
               +     +      +    +  ++   F  +         +   +   L    +   
Sbjct: 581 ARGLEGQRTLVRPVQLLKEVQRIARDTFPKFISVDITTAEDTWSLLGDPTQLHQVLLNLC 640

Query: 327 ----DKCPIP 332
               D  P  
Sbjct: 641 VNARDAMPQG 650


>gi|126651966|ref|ZP_01724158.1| two-component sensor histidine kinase [Bacillus sp. B14905]
 gi|126591235|gb|EAZ85344.1| two-component sensor histidine kinase [Bacillus sp. B14905]
          Length = 621

 Score =  300 bits (767), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 82/409 (20%), Positives = 166/409 (40%), Gaps = 26/409 (6%)

Query: 403 IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT-RINKRKMEIEVMQLCSILEAT 461
           ++   +      +    +     E            +  +  +   + E  +L S+L   
Sbjct: 224 MRKQAQAMAKGNYSRKVRVYGTDEIGQLAVTFNHLTNRLQEAQSTTDAERRKLDSVLSNM 283

Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
           +DG+   +R+G I+  N    +L     +  L +P    L  +        +    +++L
Sbjct: 284 TDGVIATDRKGRIILINDPALELLHISRDITLGRPIASVLGIDQEYSFEDLIHMSDAINL 343

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE 581
             +                  +I K+  F +     +HDI+E ++ +             
Sbjct: 344 NFSTSDAPYILRAN-----FSVIQKETGFINGLITVLHDITEQEKIEMD----------- 387

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI-EYANYIDRSGNLVLDI 640
              + +F++ VSHE+RTPLT +  + E + +   G   +      + N        ++ +
Sbjct: 388 ---RREFVSNVSHELRTPLTTMRSYLEALAD---GAWKDENIAPTFLNVTQTETERMIRL 441

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILAD 700
           VNDLL +S+++S    L+ + V  +   +  I   ++  ++K +     F      +  D
Sbjct: 442 VNDLLQLSRMDSSDYELNKDIVLFNSFFNRIIDRFEMSKSDK-VQFARLFPETSFYVEID 500

Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760
              V Q+  NI+SNAI ++P GG I    T    + + + + D G+G+    + +    F
Sbjct: 501 TDKVTQVIDNIISNAIKYSPDGGNIRFGFTGQ-GDMLKVMISDDGMGIPKENVGRIFDRF 559

Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            ++  ++     GTGLGL +A+ M++A+ GK +  S   +GT I    P
Sbjct: 560 YRVDRARARSMGGTGLGLAIAREMIEAHGGKIWAESEEGQGTTIFFTLP 608


>gi|116622873|ref|YP_825029.1| multi-sensor hybrid histidine kinase [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116226035|gb|ABJ84744.1| multi-sensor hybrid histidine kinase [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 1100

 Score =  300 bits (767), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 107/742 (14%), Positives = 235/742 (31%), Gaps = 75/742 (10%)

Query: 113 MIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172
           + G R  D +    +        +L+R +     +      G   ++ +++   P+ +  
Sbjct: 134 LAGRRFGDDTHFQDLM-----QMVLRRGDIVQRDS-HLGESGDTAHLGVNV---PLRAAP 184

Query: 173 RE-FSGFRGFGI--------VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYD 223
                G   F I        +    V      +     +  + L+             + 
Sbjct: 185 GSPIFGAVMFSIDSLALAHTLTEWPVPTRSGEVMLVHREGDTVLYLTNLRGRPGAALNFR 244

Query: 224 IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY 283
           +  ++S    ++  N V    E   ++   +       +   +  +  + D   +     
Sbjct: 245 VPLERSDLAVVKAVNGVEGNLEAVDYRGVPVFA-AARAVPGTDWYVVAKLDSEEVWEPLR 303

Query: 284 TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG-------ENLTPETVDKCP-----I 331
                 G    +   +   L                           E  D        +
Sbjct: 304 RGSTMLGVTAASLALALGALLFVLWRRHQVAVYRELCESAVARRALAEQYDYLSRFANDV 363

Query: 332 PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR 391
              +   G +  AN   +    Y S++ +         L + +  D           +  
Sbjct: 364 ILLLDPDGAIVRANDRAVESYGY-SLEVLAGMN-----LRSLRTPDALRAFEADWRMAGE 417

Query: 392 TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV 451
                    H    NRE  + ++        +    + +  I  +  + ++ + ++    
Sbjct: 418 RESMVYETTHRASDNREFPVEVSMRALRVEKR----VYRQAIIRDISERKMAEMELSQSE 473

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE-DILRKPFTVFLEQNTPSVMN 510
            +L  ++E    GI +++    +L  N A   +FG   E D++      F++      + 
Sbjct: 474 ARLRQLVEHAPYGIVVLDG-LEMLFANPAAHWMFGAEHEGDLVGCSLLQFVDAAECEQVV 532

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLS--LRIIIKKLPFSSCYSLTMHDISEWKQEK 568
               +  +      +E+       + +     +     +        L   DI+E KQ +
Sbjct: 533 ERARQFRAGIALGIIER--RYRRFDGRTFWALVSTTAIEYNECPATLLFYQDITEKKQAE 590

Query: 569 NKLSHAKKIAEKES--SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
            + +  ++   +             V+H+    LT I G+ +++         +    + 
Sbjct: 591 EQRAALEEQLRQAQKIESVGRLAGGVAHDFNNYLTVINGYCDMLL---ADAPHSGELRDG 647

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
              I  +G     + + LL  S+    K      P+ L+  V+++  L++     + I  
Sbjct: 648 LQEIRAAGERAASVTSQLLAFSR----KQLADPRPICLNRTVTDSGKLLRRLI-GENIEF 702

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH--------------T 732
            TS  + +  ++ D   + Q+ +N+  NA    PSGG+I I+T                 
Sbjct: 703 VTSLEDPLDPVMVDPGQIDQLIMNLAINARDAMPSGGRIEIATRKVRLEEGGVPRNPLAH 762

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
           + +  +L V DTGVG+     +K  +PF          G GTGLGL  A  +V+   G  
Sbjct: 763 AGDYAVLSVSDTGVGIAPEIQQKIFEPFFTTK----RVGHGTGLGLCTAYGIVNHAGGWI 818

Query: 793 YIFSTPAKGTLIEIIFPLYDTS 814
            + S P  G    +  P+   +
Sbjct: 819 EVDSLPGHGATFRVWLPVTKAA 840



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/385 (9%), Positives = 102/385 (26%), Gaps = 42/385 (10%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D  G +   ++   ++ G     + GM L  +     +        +   + +   +TT
Sbjct: 367 LDPDGAIVRANDRAVESYGYSLEVLAGMNLRSLRTPDALRAFEADWRMAGERESMVYETT 426

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +      P++++   +    R +       I+              + + +   L 
Sbjct: 427 HRASDNR--EFPVEVSMRALRVEKRVYRQA----IIRDISERKMAEMELSQSEARLRQLV 480

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS----SLTEYYAHKDDVLKTEKYPLLTS 264
           E       V      +F+  +       +++      SL ++    +     E+     +
Sbjct: 481 EHAPYGIVVLDGLEMLFANPAAHWMFGAEHEGDLVGCSLLQFVDAAECEQVVERARQFRA 540

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
             +    +  +   +   +        +     E    L      +     +E      E
Sbjct: 541 GIALGIIERRYRRFDGRTFWALVSTTAI--EYNECPATLLFYQDITEKKQAEEQRAALEE 598

Query: 325 TVDKCP--IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
            + +          + G     N    ++  Y              LL     S      
Sbjct: 599 QLRQAQKIESVGRLAGGVAHDFNNYLTVINGY-----------CDMLLADAPHSGELRDG 647

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
                            L  I+   E + ++T      + +   +     +     D+  
Sbjct: 648 -----------------LQEIRAAGERAASVTSQLLAFSRKQLADPRPICLNRTVTDSGK 690

Query: 443 NKRKMEIEVMQLCSILEATSDGIAI 467
             R++  E ++  + LE   D + +
Sbjct: 691 LLRRLIGENIEFVTSLEDPLDPVMV 715


>gi|125974108|ref|YP_001038018.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           thermocellum ATCC 27405]
 gi|125714333|gb|ABN52825.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           thermocellum ATCC 27405]
          Length = 556

 Score =  300 bits (767), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 85/370 (22%), Positives = 170/370 (45%), Gaps = 28/370 (7%)

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
             +   +K++ +  +  +I E   +GI ++N +G+IL  N++ + +F    +DI+ K   
Sbjct: 211 QIKSQFKKLKEQKEEFNAITENIREGIIVLNNKGLILFINKSAADIFNVSTQDIINKHIL 270

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM 558
                +    +   +   +   L        + +  E     L   +K         L +
Sbjct: 271 TL---DRSITLQKAIETAMGGHL-----FEDIFAIGENSFNLLASPVKDEVVVKGVILFI 322

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            D++E +  +                + +F A VSHE++TPLT+I+G++E++K+   G +
Sbjct: 323 LDVTEKQSAE--------------KMRREFAANVSHELKTPLTSILGYAELMKS---GMV 365

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
                 E+++ I      ++D++ D++ IS+++   + L FE + L E   E +  +   
Sbjct: 366 KPEDISEFSDRIYNEARHLIDLIEDVIRISRLDEKNVQLPFEEIDLLELAKETVGRLSSL 425

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738
           A +KRI +  S   +   I    + ++++  N+  NAI +    G++ ++   T +++V+
Sbjct: 426 AQQKRIKL--SVGGDNAIIFGVRQILEEMIYNLCDNAIKYNYENGKVDVNVK-TFSDQVV 482

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           L V D G G+      +  + F +I  S      GTGLGL + K   + +  K  + S P
Sbjct: 483 LTVADNGFGIPREHQSRVFERFYRIDKSHSRETGGTGLGLSIVKHSAEFHNAKIRLMSKP 542

Query: 799 AKGTLIEIIF 808
            KGT I +IF
Sbjct: 543 GKGTTITVIF 552


>gi|226357739|ref|YP_002787479.1| histidine kinase, classic [Deinococcus deserti VCD115]
 gi|226319982|gb|ACO47975.1| putative histidine kinase, classic [Deinococcus deserti VCD115]
          Length = 872

 Score =  300 bits (767), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 95/757 (12%), Positives = 218/757 (28%), Gaps = 58/757 (7%)

Query: 95  LKEISEELPKTIGNYAFKMIGM-RLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIE 153
                    +T+       +G  RL              + +   R              
Sbjct: 132 FTPAERRFLRTLAAQCAVALGRARLSGALHRQVEARTRELEESRARAEVLATLGDALQRA 191

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA-------LGKRLDKKFSH 206
            +   V +  A  P+        G     +V + R                  L    + 
Sbjct: 192 HSPEDVAVQ-ALEPL----GHTLGASSVMVVQLERGRLHVPTIWGETLPAMAALRTSGTP 246

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE---KYPLLT 263
           L E          +K   ++       +       +      H            + L  
Sbjct: 247 LKEAALLDRCARTKKAGYYADYDAAGGVLTGLATLAFAVEPIHASGDDLVGFLCAWRLPR 306

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS-------HRNHPSLSAYFD 316
           +E     +++             +   T Q   + +    +             + A  +
Sbjct: 307 TEPWPAGDRDLLRRSAGTLGVALERAVTTQALQERTEALDAFVAFTERVAGETDVRALIE 366

Query: 317 EGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
              ++   T+    + ++    G            +     + +                
Sbjct: 367 HAADVLRATLGDLGVGYYEPEDGRW-----KARAWSNGIPREFVARMQAGFEFSTPRFAH 421

Query: 377 DNNAIKPVMLYRSD-------RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
                +P  +   +             +   +    +   +  ++    +          
Sbjct: 422 AIRDQQPHFMQEWNSASEDLPGARRTGAMATYPYFQHGRPTGVLSAGSMQTLGWSEREQA 481

Query: 430 QNGIEPEDV----DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
                   +    +   +  ++         +L +  +G+  I+ +G     N A  K+ 
Sbjct: 482 IIRAVGRSLGLAMEGTRSAAELRRASRFNELVLNSLGEGVTTIDAQGRSTLANPAALKML 541

Query: 486 GYPVEDILRKPFTVFLEQNTP-----SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
           GY  ED + +P    +  + P           +                    K+     
Sbjct: 542 GYTAEDFMGRPQHALIHHSYPDGSPFPREACEIYAAFVDGQVHRANDEVFWR-KDGSSFP 600

Query: 541 LRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
           +      +   S       L   D++E ++ +  L  A     + ++    F    SH++
Sbjct: 601 VEYTSTPILNESGEIEGSVLVFRDVTERQRAEATLRQANDELRRSNAELEQFAYVASHDL 660

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           + PL  +  FS+++  +  G   + R   Y   I      +  ++ DLL  S++  G   
Sbjct: 661 QEPLRTVTSFSQLLAKKYAGQ-TDARGQMYVRLITEGTQRMTQLLQDLLAFSRVAKGAA- 718

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716
                V+    +++    +          +       +P +L D   ++Q+  N++ NA+
Sbjct: 719 -DPVRVNTGVILAQVSQDLAAQIQHTGAQLHI---GEVPDVLGDASQLRQLFQNLIGNAL 774

Query: 717 HFT-PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
            F+ P  G ++          V  RV+D GVG+     E+    F ++    + + EG+G
Sbjct: 775 KFSHPERGPVVWVGAECDGGLVRFRVQDNGVGIAPEYFERIFTIFQRLH--TREQYEGSG 832

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
           +GL +A+ +V+ + G+ ++ STPA GT      P  +
Sbjct: 833 IGLSIARKIVERHGGRIWLESTPALGTTFYFTLPAVE 869



 Score = 70.4 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/250 (10%), Positives = 63/250 (25%), Gaps = 13/250 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK-------RQN 141
           IDA G     +    K +G  A   +G     +    + D +    +  +        Q 
Sbjct: 524 IDAQGRSTLANPAALKMLGYTAEDFMGRPQHALIHHSYPDGSPFPREACEIYAAFVDGQV 583

Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
                   W  +G++   P++  + PI + + E  G     +           A  ++ +
Sbjct: 584 HRANDEVFWRKDGSSF--PVEYTSTPILNESGEIEG--SVLVFRDVTERQRAEATLRQAN 639

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK-YP 260
            +    +   +  + V         +        +  K +  T+        L TE    
Sbjct: 640 DELRRSNAELEQFAYVASHDLQEPLRTVTSFSQLLAKKYAGQTDARGQMYVRLITEGTQR 699

Query: 261 LLTSEESSLPEQEDFHTINLNQYTK-KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
           +    +  L                       +  +     ++   + H           
Sbjct: 700 MTQLLQDLLAFSRVAKGAADPVRVNTGVILAQVSQDLAAQIQHTGAQLHIGEVPDVLGDA 759

Query: 320 NLTPETVDKC 329
           +   +     
Sbjct: 760 SQLRQLFQNL 769


>gi|328954299|ref|YP_004371633.1| multi-sensor signal transduction histidine kinase [Desulfobacca
           acetoxidans DSM 11109]
 gi|328454623|gb|AEB10452.1| multi-sensor signal transduction histidine kinase [Desulfobacca
           acetoxidans DSM 11109]
          Length = 591

 Score =  300 bits (767), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 85/373 (22%), Positives = 170/373 (45%), Gaps = 31/373 (8%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           R +  +  +  +IL +  +G+  ++    +++ N+A S+L     E    +     +   
Sbjct: 243 RTILRQRQEQEAILASMVEGVVAVDMNDRLITLNKAGSRLLMVNPEVAKGQSIQEIIRNQ 302

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDIS 562
                               +E     +   E+++ L                L M+D++
Sbjct: 303 ELQRFLQQTRTA-----TIPVEGELTLNGLSERIIQLHGSKLLDAQGKVIGVLLVMNDVT 357

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           + ++ +                + DF+A VSHE+RTP+T+I GF E +++       N  
Sbjct: 358 KMRRLE--------------RIRRDFVANVSHELRTPITSIKGFVETLQSGAIYEPDNA- 402

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIES----GKMNLHFEPVSLDEAVSEAISLVQLY 678
            + + N + R  + +  I+ DLL +S+IE     GK+ L ++P  L   +  AI + ++ 
Sbjct: 403 -VHFLNIMARQADRLNQIIEDLLTLSRIEQEEEEGKVTLTWKP--LKTVLQAAIQVCEVR 459

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738
           A EK+I I  S  +N+ +   +   +++  +N++ NAI ++P    + + T   + E+V+
Sbjct: 460 AAEKQITISLSCPDNL-QARINPPLLEEAVVNLIDNAIKYSPPETAVAV-TAEPATEKVL 517

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           +RVRD G G+    L +  + F ++  S+  +  GTGLGL + K +  A+ G   + ST 
Sbjct: 518 IRVRDQGRGIALEHLPRLFERFYRVDTSRSRKVGGTGLGLAIVKHIAQAHDGWVTVDSTL 577

Query: 799 AKGTLIEIIFPLY 811
            +G++  +  PL 
Sbjct: 578 GQGSVFTLHLPLS 590


>gi|328952225|ref|YP_004369559.1| multi-sensor hybrid histidine kinase [Desulfobacca acetoxidans DSM
            11109]
 gi|328452549|gb|AEB08378.1| multi-sensor hybrid histidine kinase [Desulfobacca acetoxidans DSM
            11109]
          Length = 1256

 Score =  300 bits (767), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 110/789 (13%), Positives = 236/789 (29%), Gaps = 106/789 (13%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            +D  G L E+++      G     ++ + + D+     +         L  +     +  
Sbjct: 359  MDQDGNLIEVNDRAVAAYGYTRETLLQLNIRDIVPEAEVPALYQWSQELLAEQGKIYEGY 418

Query: 149  LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                +G+    P++++   I    R++       IV          A       +   L 
Sbjct: 419  HRRQDGSIF--PVEVSVNLIQVEGRQYV----QEIVRDISNRKQTGAELALHTTRLQALV 472

Query: 209  EIKKGHSSVEKEKYDIFSQQ---------------------------------------- 228
            ++ +  S+  +E  D   +                                         
Sbjct: 473  DLHQLASAPREEILDFGLEAVGSTLQSEFSFIGLINEDESEMTIHRWSKQVMDECSMANK 532

Query: 229  ----------SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTI 278
                           +R++  V        H  +    E          ++P  +D   +
Sbjct: 533  PIHFPVAKAGRWADCIRLRQAVVVNDYPAPHPGNKGLPEG-HAPIRRFLAVPVLDDRRVV 591

Query: 279  NLNQYTKKQY---FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV 335
             +     K        +   S    +      H  ++    E        ++    P  V
Sbjct: 592  AMAAVANKATDYTTDDINALSSLLNKMWEILRHREMAEALQESNEYLNNLINYANAPIIV 651

Query: 336  YSHGNLF-YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394
            +    +    N +F  L+ YK+ + I            P+      +    L    R   
Sbjct: 652  WDPDFVVTRFNRAFEHLSGYKASEVIGQKL----FFLLPEEYQEKFLNQ--LSHVMRGES 705

Query: 395  AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
              S  +  ++ + E    +        ++    +       +    +  +          
Sbjct: 706  WESQEIPILRRDGEIRTVLWSSANIYGSRGNAIIATIAQGQDISKRKQAEEA-------F 758

Query: 455  CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
              ++     GI I+ R    +  N     + GY  E+IL +     +      ++     
Sbjct: 759  HVLVTNAPIGIFIL-RGLKFVMVNPGFENITGYKAEEILGRDSLSLVVPEYRRMVRQKAL 817

Query: 515  EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA 574
            ++L  +L   +E   +    E K +  +I                DISE K  +++   A
Sbjct: 818  KMLKGELDLPIEFPVIIKNGETKWVMEKITSTIYQDQRTALGYFLDISERKNLESQFLQA 877

Query: 575  KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
            +K+              V+H+    L  +IG+ E++             + Y   I ++ 
Sbjct: 878  QKM-----EAVGRLAGGVAHDFNNMLKVVIGYCELMSRDLS---PQDPLVGYLAEIRKAA 929

Query: 635  NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
                 + + LL  S+ +   +      ++L++ ++   +L++     + I +       +
Sbjct: 930  ERAASLTDKLLAFSRKKISVLKF----MNLNDHLAGMQTLIERLI-GEDIEVLLVLDPAL 984

Query: 695  PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT--------------HTSNEEVILR 740
              +  D   + QI +N++ NA    P GG++ I T                     V+L 
Sbjct: 985  GTVKTDPAHIDQIVMNLVINARDAMPMGGKLTIETANVYLDESYTDSHSYVIPGPYVMLA 1044

Query: 741  VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
            + D+G GM     E+  +PF            GTGLGL     +V  + G   ++S    
Sbjct: 1045 ISDSGQGMDAATRERIFEPFFTTKEMGN----GTGLGLSTVYGIVKQSGGHIQVYSEIGA 1100

Query: 801  GTLIEIIFP 809
            G   +I  P
Sbjct: 1101 GATFKIYLP 1109



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 18/139 (12%), Positives = 54/139 (38%), Gaps = 5/139 (3%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
           +R+ +  +     +++  +D I +++++G ++  N      +GY  E +L+      + +
Sbjct: 335 ERERQALLSHFEYLVKYANDIILLMDQDGNLIEVNDRAVAAYGYTRETLLQLNIRDIVPE 394

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL--TMHDI 561
                +  +  E+L+    Q          ++  +  + + +  +       +   + DI
Sbjct: 395 AEVPALYQWSQELLA---EQGKIYEGYHRRQDGSIFPVEVSVNLIQVEGRQYVQEIVRDI 451

Query: 562 SEWKQEKNKLSHAKKIAEK 580
           S  KQ   +L+      + 
Sbjct: 452 SNRKQTGAELALHTTRLQA 470



 Score = 47.7 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 33/308 (10%), Positives = 82/308 (26%), Gaps = 17/308 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWY 144
            W  D    +   +       G  A ++IG +L  +    + +   N +  +++ ++   
Sbjct: 651 VW--DPDFVVTRFNRAFEHLSGYKASEVIGQKLFFLLPEEYQEKFLNQLSHVMRGESWES 708

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            +  +   +G      +  ++  IY                              L    
Sbjct: 709 QEIPILRRDGEIR--TVLWSSANIYGSRGNAI-IATIAQGQDISKRKQAEEAFHVLVTNA 765

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL-T 263
                I +G   V      +          + +  +   +      +      +  L   
Sbjct: 766 PIGIFILRGLKFVM-----VNPGFENITGYKAEEILGRDSLSLVVPEYRRMVRQKALKML 820

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTL--QNNSKESFEYLSHRNHPSLSAYFDEGENL 321
             E  LP +      N       +   +   Q+       +L      +L + F + + +
Sbjct: 821 KGELDLPIEFPVIIKNGETKWVMEKITSTIYQDQRTALGYFLDISERKNLESQFLQAQKM 880

Query: 322 TPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
             E V +       +   N+      +  L          + G L+ +  A + + +   
Sbjct: 881 --EAVGRLAGGVA-HDFNNMLKVVIGYCELMSRDLSPQDPLVGYLAEIRKAAERAASLTD 937

Query: 382 KPVMLYRS 389
           K +   R 
Sbjct: 938 KLLAFSRK 945



 Score = 41.9 bits (97), Expect = 0.49,   Method: Composition-based stats.
 Identities = 16/159 (10%), Positives = 38/159 (23%), Gaps = 29/159 (18%)

Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIE-------I 362
           L        +     V        +    GNL   N   +    Y     ++        
Sbjct: 334 LERERQALLSHFEYLVKYANDIILLMDQDGNLIEVNDRAVAAYGYTRETLLQLNIRDIVP 393

Query: 363 AGGLSTLLD--APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
              +  L       L++   I      R D +       ++ IQ                
Sbjct: 394 EAEVPALYQWSQELLAEQGKIYEGYHRRQDGSIFPVEVSVNLIQVEGRQY---------- 443

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459
                       I  +  + +    ++ +   +L ++++
Sbjct: 444 ---------VQEIVRDISNRKQTGAELALHTTRLQALVD 473


>gi|294645581|ref|ZP_06723274.1| PAS domain S-box [Bacteroides ovatus SD CC 2a]
 gi|292639026|gb|EFF57351.1| PAS domain S-box [Bacteroides ovatus SD CC 2a]
          Length = 622

 Score =  300 bits (767), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 105/608 (17%), Positives = 218/608 (35%), Gaps = 40/608 (6%)

Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD 252
              +   L    +  ++ + G   V  E+ +     +         ++     Y     +
Sbjct: 48  AVRILDSLPDMLTVFNQNEVGIEVVSNEETNHVGISNKDFKGMYMREMVPPEAYQNIHSN 107

Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
           + +      +++    L    + H      +   + +             L      +  
Sbjct: 108 MRQAVSTGAVSTAHHELDFNGEHHHYENRIFPLDEEY------------VLIMCRDITER 155

Query: 313 AYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
                   +    +DK       V   G L YAN  F+               G+  + D
Sbjct: 156 VTTQRQLEVFKSVLDKVSDSILAVSEDGTLVYANKQFIEEYGVT------QQMGIQKIYD 209

Query: 372 APKLS--DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
            P          + +   R +    A  A       ++E    ++     + N+      
Sbjct: 210 LPVSMTTKEAWERRLQEIRDNDGTFAYRAAYMRKGEDKERMHQVSTFLIRENNEE----L 265

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG--IILSTNRAVSKLFGY 487
                 +  D    + ++    + L  IL      + + + E     L  N+A +   G 
Sbjct: 266 TWFFTQDITDVIKKQDELRELNLLLDGILNNIPVYLFVKDPENDFRYLYWNKAFADHSGI 325

Query: 488 PVEDILRKPFTVFLE-QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
           P    +                      E+L    R  +++  L  T + +++     + 
Sbjct: 326 PASKAIGHTDYEVFPSHGDAEKFRKDDLELLQTHKRIDMQETYLSVTGKARIVQTLKALV 385

Query: 547 KLPFSSCY-SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
            +            DI+  +  + +L  A+  AE+    KS FLA +SHEIRTPL AI+G
Sbjct: 386 PMEGRKPLQIGISWDITNLQNIEQELIKARIKAEQSDRLKSAFLANMSHEIRTPLNAIVG 445

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
           FS+++               Y+  I+++ +++L ++ND+LD+SKIE+G +     P++L 
Sbjct: 446 FSQLL----PAAETAEEKKLYSGIINQNSDILLQLINDILDLSKIEAGTLEYIKRPMNLG 501

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725
           E      ++ +    E  + +     +    I  D   + Q+  N L+NA  FT +G +I
Sbjct: 502 EVCRTIYAVHKERVKE-GVTLVFDNEDENLFIEGDQNRIMQVITNFLTNASKFTYAG-EI 559

Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
            +    T    + + V+DTG+G+   +++   + F ++ +      +GTGLGL + + ++
Sbjct: 560 RLGFERTDKN-IRVYVKDTGIGIEPEKVDHIFERFVKLNSF----AQGTGLGLSICQMII 614

Query: 786 DANMGKFY 793
           +   G+  
Sbjct: 615 EKIGGEIG 622


>gi|288870015|ref|ZP_06112594.2| putative response regulator receiver domain protein [Clostridium
           hathewayi DSM 13479]
 gi|288868794|gb|EFD01093.1| putative response regulator receiver domain protein [Clostridium
           hathewayi DSM 13479]
          Length = 975

 Score =  300 bits (767), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 108/601 (17%), Positives = 207/601 (34%), Gaps = 42/601 (6%)

Query: 239 KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE 298
           +  S           L T++       E     +      ++              + +E
Sbjct: 97  EAVSRLLSKPESGAYLNTQQRATFVFREKGDGLETVHIHNSVPFSEIHDDELFPVESGRE 156

Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG---NLFYANPSFLLLTKYK 355
           +FE L           ++       +     P     +S      +   NP       Y 
Sbjct: 157 AFERLKSALDTK-KQEYEHQTRFLEQLYHTLPCGILQFSTDPAHTIISVNPMVWKFYGYD 215

Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
           S  +   A  +S  L    L D   I  ++   +     +AS R H I+ + E +     
Sbjct: 216 SEAEYREA--VSNPLQKVDLQDQEWISTLLDRLTLNGE-SASYRRHCIRRDGEEAWINVV 272

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV----MQLCSILEATSDGIAIIN-- 469
           +     +   E +    +  +  +    ++  E E       L + +      I  +N  
Sbjct: 273 MGRIINSNGMEVI--QAVFTDITEQMRLEQAQEQERVLENRFLRAAICTAYPLIVSVNLT 330

Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY--------LTEILSLDL 521
           ++      N    + +    +    + +   + +   S    +        L    S   
Sbjct: 331 QDTYHCFLNE--QEEYQLSPDGCFTELYASCIPEIYSSYQADFASTFSPEALQRRFSAGE 388

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIK----KLPFSSCYSLTMHDISEWK----QEKNKLSH 573
           ++       G  ++ K   L +                  +  + E +    +++  L  
Sbjct: 389 QEIY-MELQGQGQDGKYHWLSLHAIAVENPFNDDVLTICLVKFLDELRQEQARQEQLLRD 447

Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
           A   A+  S  KSDFL+R+SH+IRTP+ AIIG S +    +     +    +    ID S
Sbjct: 448 ALASAQAASRAKSDFLSRMSHDIRTPMNAIIGMSTI---GQIKLHDSRTVKDCFQKIDTS 504

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT-SFAN 692
              +L ++ND+LD+S+IE+ KM +  +       V E   ++     E+ I         
Sbjct: 505 SKYLLSLINDILDMSRIETDKMEIAHDLFDFRAFVEEINQIIYPQTLEREIAYEMRHLEP 564

Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN----EEVILRVRDTGVGM 748
                + D   +KQI +N+LSNA+ FT  GG + +             +   + D G+GM
Sbjct: 565 LESHYIGDSLRMKQILMNLLSNALKFTQPGGSVSVDIAEEKRTNGYAYIKFVIEDNGIGM 624

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           +   +++  +PF Q          G+GLGL +  ++V    G   + S   +G+   +  
Sbjct: 625 SEEFMDRLFQPFEQEAPGNARNNVGSGLGLSIVYSLVQLMGGTISVTSHKQEGSRFTVTV 684

Query: 809 P 809
           P
Sbjct: 685 P 685


>gi|242280815|ref|YP_002992944.1| histidine kinase [Desulfovibrio salexigens DSM 2638]
 gi|242123709|gb|ACS81405.1| histidine kinase [Desulfovibrio salexigens DSM 2638]
          Length = 568

 Score =  300 bits (767), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 74/238 (31%), Positives = 128/238 (53%), Gaps = 7/238 (2%)

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           L   K  AE  S  K++FLA +SHEIRTP+ +I+G  E++K        +    E+ N  
Sbjct: 331 LQEEKAKAETASKVKTEFLANMSHEIRTPMHSILGMVELLKETNV----DEEQREFLNIA 386

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
             +G  +L+I+ND+L+ISKIE+G + +      L E V   +S+  L A  K + +    
Sbjct: 387 GTAGESLLEIINDVLEISKIEAGHLQIERHEFLLREMVERVVSVFALDAARKGLKLVCHI 446

Query: 691 ANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749
             N+P  ++ D   ++Q+  N++SNA+ FT  G  I++S    +  ++I  V+D G+G+ 
Sbjct: 447 DENVPDKVVGDATRIRQVLNNLISNAVKFTSEG-TIVVSIYWEAE-KLIFAVKDEGIGIA 504

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
             ++    + F Q  +S   +  GTGLGLP+++ +V    G+ ++ S+  +GT     
Sbjct: 505 ADKINYIFESFTQADSSTSRKYGGTGLGLPISRKLVSMMGGEIFVCSSVGEGTTFRFY 562


>gi|114569450|ref|YP_756130.1| periplasmic sensor signal transduction histidine kinase [Maricaulis
           maris MCS10]
 gi|114339912|gb|ABI65192.1| periplasmic sensor signal transduction histidine kinase [Maricaulis
           maris MCS10]
          Length = 562

 Score =  300 bits (767), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 107/381 (28%), Positives = 189/381 (49%), Gaps = 6/381 (1%)

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
             G      D  + + + E   ++  +  +A+   +   + +G IL+ +R +  L     
Sbjct: 150 AFGALRAVHDADLARAEAERGRVRAKA-FDASPVPLVACDADGHILAASRGLRDLSPGLP 208

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
            D+   P       +        L         + +E   +          + +  + + 
Sbjct: 209 RDLKGLPLADLGFDDDDRA---QLAASGRRAALRDVEGPLVVRGPRGHSEDVIVKTRPIH 265

Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
             S  +L+       +    +  H ++ AE+++  KS FLA VSHE+RTPL AIIGFS+V
Sbjct: 266 GGSVITLSKDSGPALQAALTQARHDREAAEEDARAKSQFLASVSHELRTPLNAIIGFSDV 325

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           +K + FGPL   RY EYA+ I  SG  +++++ D+LD+SKIE+ +  L  E   + E V+
Sbjct: 326 MKARLFGPLP-ARYAEYADLIHESGQHLMELIGDVLDMSKIEADRYELVRETFDIGEVVN 384

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
            +  +++L A E  I ++    +    +  D ++++QI LN+LSNA+ FTP GG I++  
Sbjct: 385 LSAKMMRLQAEEAGINLKIKRHDGPLLVDGDRKALRQILLNLLSNAVKFTPKGGAIVV-M 443

Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
              S  ++++ V D+GVG+   E  +  +P+ Q  N++ I   GTGLGL L +A+ + + 
Sbjct: 444 ARASGGQLVMAVGDSGVGIDPEETARLGQPYQQAANARDIEKRGTGLGLSLVRALSELHG 503

Query: 790 GKFYIFSTPAKGTLIEIIFPL 810
           G   I S   +GT + I  P+
Sbjct: 504 GSMNIASRKGEGTTVTISLPI 524


>gi|121594707|ref|YP_986603.1| multi-sensor signal transduction histidine kinase [Acidovorax sp.
           JS42]
 gi|120606787|gb|ABM42527.1| multi-sensor signal transduction histidine kinase [Acidovorax sp.
           JS42]
          Length = 465

 Score =  300 bits (767), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 82/435 (18%), Positives = 160/435 (36%), Gaps = 44/435 (10%)

Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450
             C AA        W     L                +     +      R  + K +  
Sbjct: 31  GACFAAWLWFAWDLWRGARVLNWLRQGDPTQTPRLSGLWGEAADRARRLVRQGQLKAQAG 90

Query: 451 VMQLCSILEAT---SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
             +L  IL+A     +G+ +++ EG I   N+   + FG   E   ++     +     S
Sbjct: 91  DARLQEILQALQASPNGVMLLDAEGHIEWCNQMAEEHFGLDAERDAQQSIGNLVRDPDFS 150

Query: 508 ---VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564
                  Y  +++      T  +             + + +          L+  D++  
Sbjct: 151 TYYASKDYTRDVVLPGRASTPSRPVR----------VSVHLHPYGDGRKLLLS-RDVTAL 199

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           +Q +              + + DF+A VSHEIRTPLT ++GF E ++  +   L N    
Sbjct: 200 EQAE--------------AMRRDFVANVSHEIRTPLTVLMGFVETLQTLQ---LSNEERA 242

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA----- 679
            Y   + +    + ++V DLL +S++E        E V++   +       +  +     
Sbjct: 243 RYLRMMSQQAVRMQNLVQDLLTLSRLEGSPPPSMHEWVAVSTLLRRCEDEGRALSALLTQ 302

Query: 680 ----NEKRILI-RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
                  +I       A    ++  +   ++    N+++NA+ +TP GG I ++     +
Sbjct: 303 NQPGKLHQITFPTAEAAQAAGQVAGNAAELQSALANLVNNAVRYTPPGGSITVAWDVEPD 362

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
                 VRD+G G+    L +  + F ++  S+     GTGLGL + K +V  +     +
Sbjct: 363 GSARFVVRDSGPGIEPEHLPRITERFYRVDRSRSRDTGGTGLGLAIVKHVVQRHGAALQV 422

Query: 795 FSTPAKGTLIEIIFP 809
            S   +G+   ++FP
Sbjct: 423 ASVVGQGSTFTVVFP 437


>gi|15674629|ref|NP_268803.1| two-component sensor histidine kinase [Streptococcus pyogenes M1
           GAS]
 gi|21909909|ref|NP_664177.1| two-component sensor histidine kinase [Streptococcus pyogenes
           MGAS315]
 gi|56808929|ref|ZP_00366637.1| COG5002: Signal transduction histidine kinase [Streptococcus
           pyogenes M49 591]
 gi|71903090|ref|YP_279893.1| two-component sensor histidine kinase [Streptococcus pyogenes
           MGAS6180]
 gi|71910249|ref|YP_281799.1| two-component sensor histidine kinase [Streptococcus pyogenes
           MGAS5005]
 gi|94989946|ref|YP_598046.1| two-component sensor histidine kinase VicK [Streptococcus pyogenes
           MGAS10270]
 gi|209559000|ref|YP_002285472.1| Two-component sensor histidine kinase [Streptococcus pyogenes
           NZ131]
 gi|13621742|gb|AAK33524.1| two-component sensor histidine kinase [Streptococcus pyogenes M1
           GAS]
 gi|21904097|gb|AAM78980.1| two-component sensor histidine kinase [Streptococcus pyogenes
           MGAS315]
 gi|71802185|gb|AAX71538.1| two-component sensor histidine kinase [Streptococcus pyogenes
           MGAS6180]
 gi|71853031|gb|AAZ51054.1| two-component sensor histidine kinase [Streptococcus pyogenes
           MGAS5005]
 gi|94543454|gb|ABF33502.1| Two-component sensor histidine kinase VicK [Streptococcus pyogenes
           MGAS10270]
 gi|209540201|gb|ACI60777.1| Two-component sensor histidine kinase [Streptococcus pyogenes
           NZ131]
          Length = 450

 Score =  300 bits (767), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 91/406 (22%), Positives = 166/406 (40%), Gaps = 36/406 (8%)

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDT-RINKRKMEIEVMQLCSILEATSDGIAIINREG 472
            +          E M  +    +  D  R+    +  E  +L SIL   SDG+   +R G
Sbjct: 55  RYTDIIDEKADIELMELSDQLNDLSDVFRLTHENLAQEKNRLASILAYMSDGVLATDRSG 114

Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
            I+  N    K      E+ L+K  T  LE +T       +         +T        
Sbjct: 115 KIIMINETARKQLNLSKEEALKKNITDLLEGDTSYTYRDLV--------SKTPVVTVNSR 166

Query: 533 TKEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
               + +SLR+        S +     + +HD +E ++E+ +                 F
Sbjct: 167 NDMGEFVSLRLRFALNRRESGFISGLVVVLHDTTEQEKEERERRL--------------F 212

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
           ++ VSHE+RTPLT++  + E +     G L       +        N ++ +++DLL++S
Sbjct: 213 VSNVSHELRTPLTSVKSYLEAL---DEGALKEDIAPSFIKVSLDETNRMMRMISDLLNLS 269

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR-----ILIRTSFANNIPRILADLRS 703
           +I++    L  E  +    ++  ++   L  N+         I   +      I  D   
Sbjct: 270 RIDNQVTQLAVEMTNFTAFITSILNRFDLVKNQHTGTGKVYEIVRDYPITSVWIEIDNDK 329

Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
           + Q+  NIL+NAI ++P GG+I +    T   ++I+ + D G+G+   +L      F ++
Sbjct: 330 MTQVIENILNNAIKYSPDGGKITVRMKTTDT-QLIISISDQGLGIPKTDLPLIFDRFYRV 388

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             ++     GTGLGL +AK ++  + G  +  S   KG+   I+ P
Sbjct: 389 DKARSRAQGGTGLGLAIAKEIIKQHHGFIWAKSDYGKGSTFTIVLP 434


>gi|237718051|ref|ZP_04548532.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
 gi|229452692|gb|EEO58483.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
          Length = 538

 Score =  300 bits (767), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 88/381 (23%), Positives = 160/381 (41%), Gaps = 16/381 (4%)

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFG-YPVE 490
           I          +  ++     +  +L+  +  I + + +   ++  N+   K  G  P  
Sbjct: 165 IVSTATKRWQVETSLQQSQRTMQKVLDNINANIFVSDYDTLKVIFANKPFRKEAGEVPAN 224

Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL-RIIIKKLP 549
               +     LE          L  + +      +      +   ++  ++  + IK L 
Sbjct: 225 AECWRMLNAGLENGCKHCPKPKL--LDANRKFTGVHFWEDYNPVTKRWYTIQSMAIKWLD 282

Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                     DI+  KQ + +L  AK+ AE+    KS FLA +SHEIRTPL AI+GFS +
Sbjct: 283 GRWAIMELATDITTRKQVELELIQAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSL 342

Query: 610 IKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
           +                Y + +  +  L+L++++D+LDISKIE+G ++L    V + +  
Sbjct: 343 LAET-----DEAELRHVYMSLVQENNELLLNLISDILDISKIEAGMIDLVMGRVDVPQLC 397

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
            E I+       +  + +R    +    I AD   + Q+  N L+NA+ FT  G  I +S
Sbjct: 398 REVIATFSHKKRDSAVELRFDENSPQIVIDADKNRIVQVLSNFLTNALKFTTKGS-ITLS 456

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                  +V   V DTG G+ + +  +    F ++ +      +G GLGL + +++V   
Sbjct: 457 YLLEDESQVRFCVTDTGKGIPDEQKHEIFNRFVKLDSF----VQGAGLGLSICQSLVKRM 512

Query: 789 MGKFYIFSTPAKGTLIEIIFP 809
            GK  + S   +G+      P
Sbjct: 513 GGKIGVESREGEGSCFWFTHP 533


>gi|309388596|gb|ADO76476.1| multi-sensor signal transduction histidine kinase [Halanaerobium
           praevalens DSM 2228]
          Length = 593

 Score =  300 bits (767), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 72/371 (19%), Positives = 163/371 (43%), Gaps = 26/371 (7%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +     +  E  +L  +L   ++GI  +N  G I+ TN+A +++F +  +    K   V 
Sbjct: 243 KQTIESLAEEKNKLKYVLSGMAEGIIAVNHLGEIILTNKAAAEIFDFKADLQGEKITEVN 302

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTM 558
           L+          +        +  + +      K ++   + +   KL            
Sbjct: 303 LDSEVKENFKQIIASESFASKQLVISRE-----KTKEYYLVHLTEIKLQDDQFWGGVAIF 357

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
           HDISE  + +                + +F+A VSHE+++PLT+I G +E++ +      
Sbjct: 358 HDISERYRFE--------------KLQREFVANVSHELKSPLTSIKGSAEILLDGII--E 401

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
              +  EY   I +  N +  ++++ L +++I+SG + L+ E + +     + + +    
Sbjct: 402 NEAQQKEYLKMILKESNSLAHLIDETLTLAEIDSGGVELNKEKIKVKTLFQD-LEIFFDN 460

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738
             ++   +   F  ++  + A+   ++Q+ +N+L+N++ ++   G+I +       E++ 
Sbjct: 461 IKKEEQSLEFEFEADL-ELYANREKIRQVLINLLTNSVKYSAKKGKIKLK-ALQMAEKIK 518

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           + V D G+G+   E +   + F +I  ++      +GLGL + K ++  + GK  + S  
Sbjct: 519 ISVSDNGIGIPKAEQKNIWERFYKIDKARTPGERSSGLGLAIVKQIIQEHQGKLALKSQV 578

Query: 799 AKGTLIEIIFP 809
            +G+    I P
Sbjct: 579 GEGSTFSFILP 589


>gi|75907309|ref|YP_321605.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
 gi|75701034|gb|ABA20710.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
          Length = 1431

 Score =  300 bits (767), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 113/697 (16%), Positives = 231/697 (33%), Gaps = 90/697 (12%)

Query: 187  NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY 246
               + D R   KRL  +   +     G +++E     +         +   +    L+  
Sbjct: 612  VDDNADMREYVKRLLSRHYVVETATDGLAALEALADHLPDLVLTDVMMPRLDGFGLLSAL 671

Query: 247  YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS---KESFEYL 303
             ++              + E +  E  +    +             +  +          
Sbjct: 672  RSNNRTREIPIILLSARAGEEAKVEGLEAGADDYLIKPFSARELLARVEATLKLAQLRRD 731

Query: 304  SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEI 362
            +     +L    +  +      +      F+V        Y N     +   +  D +  
Sbjct: 732  AMEQQQTLRQEAETAKQNVETILSSINDGFYVLDRDWRFTYVNDRLCKIISMEREDILNH 791

Query: 363  AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
               +  L      +D +    +   R+     +       + WNR     +   P     
Sbjct: 792  --SIWDLFADTIGTDID----LQFQRAFNEQTSVQFEYLYVTWNRWYEHRVYPSPD---- 841

Query: 423  QFPENMPQNGIEPEDVDTRINKRK----MEIEVMQLCSI--LEATSDGI----------- 465
                         +  + +  + +    + +E   +  +  L   +  I           
Sbjct: 842  ------GLTVFAADITERKQAELEREQLLALERHYINQLQGLTRAALAINSALSVEQVLQ 895

Query: 466  AIINREGIIL-------------STNRAVSKLF--------------------------- 485
             I ++   I+             + ++A+S +F                           
Sbjct: 896  VITDQAASIIGSHQSVTSMTIGQNWSQAISAIFLSDKYTQWQNYDVKPDRSGIYGCVGHL 955

Query: 486  ----GYPVEDILRKPFTVFLEQNT--PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
                     ++   P      +       +  +L   L     Q +  I L    + +  
Sbjct: 956  NRPMRMTQAELEAHPQWRGFGKEAKNHPPLRGWLAAPLVGRNGQNIGLIQLSDKYDGEFT 1015

Query: 540  SLRIIIKKLPFSSCYSLT--MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
            +    +              +      KQ ++    +++ AE  +  K +FLA +SHE+R
Sbjct: 1016 AADEAVLVQLAQMASVSVENVRLYEAEKQARSAAEASREEAEAANRIKDEFLAVLSHELR 1075

Query: 598  TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
            +PL  I+G+S +++N   G L   +  +  N I+R+  L ++++ DLLDIS+I  GK++L
Sbjct: 1076 SPLNPILGWSRLLQN---GKLDEAKAKQAVNIIERNAKLQVELIEDLLDISRILQGKLSL 1132

Query: 658  HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
               P++L   +  AI  V+L A    I I  +    I  +  D   ++Q+  N+LSNA+ 
Sbjct: 1133 TSSPINLASVIKGAIETVRLAAEANSIRIEVNLDGEIGLVSGDSTRLQQVMWNLLSNAVK 1192

Query: 718  FTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
            FTP+GG + I        +  + V DTG G++   +      F Q  ++   +  G GLG
Sbjct: 1193 FTPTGGLVEIRLEQV-GNQAQISVSDTGKGISPDFIPYVFDYFRQADSATTRKFGGLGLG 1251

Query: 778  LPLAKAMVDANMGKFYIFST-PAKGTLIEIIFPLYDT 813
            L + + +V+ + G  +  S     G    +  PL  T
Sbjct: 1252 LAIVRHLVELHGGTIHAESQGEGMGATFTLKLPLLPT 1288



 Score =  263 bits (672), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 68/255 (26%), Positives = 118/255 (46%), Gaps = 5/255 (1%)

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           Q   +     +   +    K+ F + VSHE RTPLT ++   E +         +    +
Sbjct: 312 QAYEEERKRAEKLAELDRAKTTFFSNVSHEFRTPLTLMLSPLEELLT---ADDLSQEQRQ 368

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
               I R+G  +L +VN LLD S+IE+G++   +EP  L    +E  S+ +    +  + 
Sbjct: 369 EMTLIHRNGLRLLKLVNTLLDFSRIEAGRVQAVYEPTDLSTFTAELASIFRSAIEQAGLQ 428

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
              +       +  D +  ++I LN+LSNA  FT SG  I ++     + +V + V DTG
Sbjct: 429 FSVTCEPLPELVYVDRQMWEKIILNLLSNAFKFTFSGA-IALTLRQVQH-QVEITVTDTG 486

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+   EL    + F ++  ++    EG+G+GL L + +V  + G+  + S    GT   
Sbjct: 487 IGIPQAELPHLFERFHRVEGARGRTQEGSGIGLALVQELVRLHGGQVQVDSLEGLGTTFT 546

Query: 806 IIFPLYDTSHPHDCI 820
           I  P+     P + I
Sbjct: 547 ITVPMGIAHLPPERI 561



 Score = 83.9 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/388 (9%), Positives = 101/388 (26%), Gaps = 41/388 (10%)

Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEK-YDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253
           A G+  +     L  +++       +   D          + +   ++ L          
Sbjct: 507 ARGRTQEGSGIGLALVQELVRLHGGQVQVDSLEGLGTTFTITVPMGIAHLPPERIQATRT 566

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
           L +         E +L           +  +   +  +         +    R +     
Sbjct: 567 LVSTALGAAPYIEEALSLLPAIKNSEASYLSPLTHNLSSSARILLVDDNADMREYVKRLL 626

Query: 314 Y-------FDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
                     +G        D  P                    L  +  +  +      
Sbjct: 627 SRHYVVETATDGLAALEALADHLPDLVLTDVM---------MPRLDGFGLLSALRSNNRT 677

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
             +              ++L                ++   ++ L   F   E   +   
Sbjct: 678 REIPI------------ILLSARAGEEAKVEG----LEAGADDYLIKPFSARELLARVEA 721

Query: 427 NMPQNGIEPEDVDTRIN-KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
            +    +  + ++ +   +++ E     + +IL + +DG  +++R+      N  + K+ 
Sbjct: 722 TLKLAQLRRDAMEQQQTLRQEAETAKQNVETILSSINDGFYVLDRDWRFTYVNDRLCKII 781

Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
               EDIL             + ++       +   + +++   L  T   +    R+  
Sbjct: 782 SMEREDILNHSIWDLFADTIGTDIDLQFQRAFN--EQTSVQFEYLYVTWN-RWYEHRVYP 838

Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLSH 573
                    ++   DI+E KQ + +   
Sbjct: 839 SP----DGLTVFAADITERKQAELEREQ 862



 Score = 38.1 bits (87), Expect = 6.0,   Method: Composition-based stats.
 Identities = 11/135 (8%), Positives = 32/135 (23%), Gaps = 10/135 (7%)

Query: 81  RTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMR----LCDVSDILHIDPNNHIGDL 136
           R   F W    +  +   ++     +G    + +G R      ++ D +       +   
Sbjct: 36  RQAMFVWW--GNNLINLYNDAYRAILGGKHPEALGQRAAVVWQEIWDQVGPRAETALFQ- 92

Query: 137 LKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRAL 196
             +         +    G         +  P+ + +    G         +         
Sbjct: 93  -NQGTYDEALLLIMERNGYPEETYYTFSYSPVPNDDGGIGGI--ICANTEDTSRIIGERQ 149

Query: 197 GKRLDKKFSHLHEIK 211
              L    +   + +
Sbjct: 150 LALLKDLAAKTADAQ 164


>gi|218781334|ref|YP_002432652.1| signal transduction histidine kinase, nitrogen specific, NtrB
            [Desulfatibacillum alkenivorans AK-01]
 gi|218762718|gb|ACL05184.1| signal transduction histidine kinase, nitrogen specific, NtrB
            [Desulfatibacillum alkenivorans AK-01]
          Length = 1131

 Score =  300 bits (767), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 113/823 (13%), Positives = 237/823 (28%), Gaps = 128/823 (15%)

Query: 86   TWNID-AHGYLKEISEELPKTIGNYAFKMIGMR--LCDVSDILHI-DPNNHIGDLLKRQN 141
             + +    G  +  S+   +  G    +++     + ++     I    N   +LL+ + 
Sbjct: 324  VYRMGIPDGKYEYCSQASEQIFGYTPQEILSTPKIIKEIVHPDWIPMFKNEWENLLEGKV 383

Query: 142  TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRAL----- 196
                +  +    G   ++        ++          G           +         
Sbjct: 384  PPSYEYKIVDKVGKGRWIYQTNTG--VFDEEGNIIAIEGC--CTDITERKEAEEKVQKHL 439

Query: 197  -----GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS--------- 242
                   R++++ S   E+++    V  E  DIF          +  +  S         
Sbjct: 440  TFFKHLTRVEQELSGEQELEEALDKVLGEVLDIFQCDRAWLLYPLDPEAPSIQINWERTR 499

Query: 243  ---LTEYYAHKDDVLKTEKYPLLTS----------------------------------- 264
                       D  +      +                                      
Sbjct: 500  PEYENPEIRRSDIPMTPGMARMFAGYIETKAPGEQYFAPGEMDIDPENRLKVKSLLAVAM 559

Query: 265  -EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
              ++  P     H  + ++                  E L   N   L     + E +  
Sbjct: 560  FPQTGKPWLFGLHQCSHSREWTDWEKDLFNEIGMRIGEAL---NSLLLLRDIRQSEEMFR 616

Query: 324  ETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
               +       ++S    + Y +PS   L+ +     I            P+        
Sbjct: 617  AITEHTSDSISIFSPEMTIKYVSPSTARLSGFDYNRFIGTDYQA---FIHPEDRLKFKTV 673

Query: 383  PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
                 +S+         +  I  + E              + P          +    + 
Sbjct: 674  LHRAMQSEGETFTIE-EVRLINASGEYVHYQVL--VVSLLETPGINGIVVNCRDLTSRQE 730

Query: 443  NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
             +R+M      L  I+ +    +  +++ G I   N    K  G    + L K       
Sbjct: 731  AEREMTHLRRLLSDIINSMPSALIGVDKAGSITHWNLGAEKFSGIVESEALGKTLNETFS 790

Query: 503  QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
                  +   + +  +         + +     ++ L + I            + + D++
Sbjct: 791  H--ILTLCDLVQKSQNTGKPHKETNVPVKIQGSQQFLDITIYPLTSEDRGGAVIRLDDVT 848

Query: 563  EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
            E  + +  +  ++K+            A ++HEI  PL  ++  +EV+ N R        
Sbjct: 849  EQVRIEEMMIQSEKML-----SVGGLAAGMAHEINNPLAGMLQNAEVLLN-RLSENLPAN 902

Query: 623  YIE----------------------YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
              E                        N I  SG     IV+++L  S+    K    F 
Sbjct: 903  LKEASNLGLDMDNIKAYMENRGIFTMLNNIRESGQRAAAIVDNMLGFSR----KTESLFL 958

Query: 661  PVSLDEAVSEAISL------VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714
               L   V + + L      ++   + K+I I   F +++P +  +  +++Q+ LN+L N
Sbjct: 959  AHDLKALVEKTLELASSDYDLKRDYDFKKIKIEREFEDDLPPVECEATNIQQVLLNLLKN 1018

Query: 715  -AI----H-FTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
             A+      ++       +       + V L V D G GM     ++  +PF        
Sbjct: 1019 GAVAMAEKTYSTDQPCFTLRLKKE-GDMVRLEVEDNGDGMPEEVRKRVFEPFFTTKG--- 1074

Query: 769  IRGEGTGLGLPLAKA-MVDANMGKFYIFSTPAKGTLIEIIFPL 810
              G+GTGLGL ++   +V+ + G   + S P KGT   I  P+
Sbjct: 1075 -VGQGTGLGLSVSYFIIVEKHRGGMRVESAPGKGTTFIIHLPV 1116



 Score = 71.2 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 18/169 (10%), Positives = 54/169 (31%), Gaps = 7/169 (4%)

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFG 486
           M            +I    +     +   +L+  ++ +  +   +G     ++A  ++FG
Sbjct: 287 MAYLWTRVLKRQVQIQAHALVASEQRFSGLLDRLNEVVYRMGIPDGKYEYCSQASEQIFG 346

Query: 487 YPVEDILRKP--FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
           Y  ++IL  P      +  +   +  +    +L   +  + E   +    + + +  +  
Sbjct: 347 YTPQEILSTPKIIKEIVHPDWIPMFKNEWENLLEGKVPPSYEYKIVDKVGKGRWI-YQTN 405

Query: 545 IKKLPFSSCYSLT---MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
                             DI+E K+ + K+       +  +  + +   
Sbjct: 406 TGVFDEEGNIIAIEGCCTDITERKEAEEKVQKHLTFFKHLTRVEQELSG 454


>gi|126739384|ref|ZP_01755077.1| sensory box histidine kinase/response regulator [Roseobacter sp.
           SK209-2-6]
 gi|126719484|gb|EBA16193.1| sensory box histidine kinase/response regulator [Roseobacter sp.
           SK209-2-6]
          Length = 857

 Score =  300 bits (767), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 82/382 (21%), Positives = 158/382 (41%), Gaps = 12/382 (3%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           R    +      ++ +++ ++ D I +++++G I + N A   +FGY  ++ + +     
Sbjct: 208 RRLAEERREAASRMGAMIASSLDAILVVDKKGRIQAYNGAAEAIFGYERDEAIGQRMEEL 267

Query: 501 L-EQNTPSVMNHYLTEILSLDLRQTLEK---ITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556
           +   +        +         +   +         K  ++  + + +      S    
Sbjct: 268 IIPPHLREAHWAGMNRFKRTGQTRVAGRGRIPLEAMRKSGEVFPVEMALSVSESGSGTVF 327

Query: 557 T--MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
              + DIS+    + +L  A+  A      K+D L  +SHE+RTPLT ++G  ++++   
Sbjct: 328 VSYIRDISDRIAAEKELLKARDDALAGERAKADLLTVMSHEMRTPLTGVLGAIDLLE--- 384

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
            G         Y N +  SG L+L  VND+L +S +E+G          L   +   +  
Sbjct: 385 -GTGPTTEQGRYLNAMRVSGELLLHHVNDVLQLSSLEAGMAPQELSDFDLKGLLEGLVDS 443

Query: 675 VQLYANEKR--ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
               A      ++++ +      R     R+++Q+ LN++ NAI FT  G  I+      
Sbjct: 444 QSANAGSHGNELILQYALDEAATRYTGSPRALQQVLLNLIGNAIKFTRDGAIILDVMPGN 503

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
             + V   V DTG G+   +LE+    F  +  S     EGTGLGL + + ++ +  G  
Sbjct: 504 GADMVEFHVSDTGQGIAPDDLERIFDDFITLDASYGRGSEGTGLGLAITRRILHSLGGSI 563

Query: 793 YIFSTPAKGTLIEIIFPLYDTS 814
              S   +G+L  I  PL   +
Sbjct: 564 TCESELGEGSLFIITLPLQPAT 585



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 39/393 (9%), Positives = 94/393 (23%), Gaps = 25/393 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-----NHIGDLLKRQNTW 143
           +D  G ++  +       G    + IG R+ ++    H+        N      + +   
Sbjct: 235 VDKKGRIQAYNGAAEAIFGYERDEAIGQRMEELIIPPHLREAHWAGMNRFKRTGQTRVAG 294

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
            G+  L  +  +    P+++A       +   SG      +              +    
Sbjct: 295 RGRIPLEAMRKSGEVFPVEMALS----VSESGSGTVFVSYIRDISDRIAAEKELLKARDD 350

Query: 204 FSHLHEIKKGHSSVEKEKYD------IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257
                  K    +V   +        + +            +   L       + +L   
Sbjct: 351 ALAGERAKADLLTVMSHEMRTPLTGVLGAIDLLEGTGPTTEQGRYLNAMRVSGELLLHHV 410

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
              L  S   +    ++    +L    +        N      E +        +  +  
Sbjct: 411 NDVLQLSSLEAGMAPQELSDFDLKGLLEGLVDSQSANAGSHGNELILQYALDEAATRYTG 470

Query: 318 GENLTPE-TVDKCPIPFFVYSHGNLFY----ANPSFLLLTKYKSVDDIEIAGGLSTLLD- 371
                 +  ++           G +       N + ++               L  + D 
Sbjct: 471 SPRALQQVLLNLIGNAIKFTRDGAIILDVMPGNGADMVEFHVSDTGQGIAPDDLERIFDD 530

Query: 372 ----APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
                      +    + L  + R   +    +       E SL +  +P + A    E 
Sbjct: 531 FITLDASYGRGSEGTGLGLAITRRILHSLGGSITCESELGEGSLFIITLPLQPATTLGEA 590

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
                +        +     +I    L  +LE 
Sbjct: 591 AQNGDVSVSSASRVLVVEDNDINRELLKQMLEQ 623


>gi|291519879|emb|CBK75100.1| Signal transduction histidine kinase [Butyrivibrio fibrisolvens
           16/4]
          Length = 881

 Score =  300 bits (767), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 89/360 (24%), Positives = 161/360 (44%), Gaps = 24/360 (6%)

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYP--VEDILRKPFTVFLEQNTPSVMNHYLT 514
           I      G+ + +    +  +N   +KL G     + I  +            + +    
Sbjct: 244 IFSTLGTGLLVFDTNYHLNLSNDYANKLLGLDKEPQRIRLREIFKLRSGEPMRMFDKAQE 303

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA 574
            I+         ++T   T +  L++    + +     CY L   D++E  +   +    
Sbjct: 304 GII------LDYRLTANVTGKVTLVNFSCKMDRNNQPMCYILVATDLTEENRLIQE---- 353

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
              A+  ++ KS+FL+ +SHEIRTP+  I G +E+I  +      +   I+YA  ID + 
Sbjct: 354 ---AQSANAAKSNFLSNISHEIRTPINVISGMNELILREC----KDESIIKYAENIDVAS 406

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
             +  ++ND+LD SKIESGK+ L     ++   +++  +L    A +K          N 
Sbjct: 407 RNLSSLINDVLDFSKIESGKIELISTDFNIGSLLNDGYNLFLALAQQKMQSFALECDPNT 466

Query: 695 PRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDTGVGMT 749
           P +L  D   +KQI  N++SNA+ +TP  G I ++ T    E     +I+ V D G+G+ 
Sbjct: 467 PSVLSGDEVRLKQILTNLISNAVKYTPDRGAINVTVTSKELENETIMLIINVTDNGIGIR 526

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             ++    + F +   ++    +G+GLGL + K +VD   G   + ST  KG+   +  P
Sbjct: 527 TEDIPNLFQNFQRFELTKNRSIQGSGLGLAITKNLVDLMHGTINVDSTYGKGSSFTVNLP 586


>gi|292486797|ref|YP_003529667.1| aerobic respiration sensor-response protein [Erwinia amylovora
           CFBP1430]
 gi|292900804|ref|YP_003540173.1| aerobic respiration control two-component system, sensor kinase and
           response regulator [Erwinia amylovora ATCC 49946]
 gi|291200652|emb|CBJ47784.1| aerobic respiration control two-component system, sensor kinase and
           response regulator [Erwinia amylovora ATCC 49946]
 gi|291552214|emb|CBA19251.1| aerobic respiration sensor-response protein [Erwinia amylovora
           CFBP1430]
          Length = 779

 Score =  300 bits (767), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 85/436 (19%), Positives = 186/436 (42%), Gaps = 19/436 (4%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L             L+       N + +     ++     E +       +
Sbjct: 81  EESRQRLERLVDKLEEMRKRDLELNQQMQ--GNIIRLNQEIADRIKAEEERLQVMARLKD 138

Query: 437 DVDTRINKR-KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
           ++  R   + ++E +   L S L+A+ D +   N +      NRA+  L G   + ++  
Sbjct: 139 EMSRREEAQIELEQQSSFLRSFLDASPDLVFYRNSDRQFSGCNRAMELLTGKSEKQLIGL 198

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSC 553
                 + +  + +     ++   ++  T E+        +    +R +    ++   S 
Sbjct: 199 SPKEVYDDDAATKVLETDEKVFHHNVSLTYEQWLQYPDGRKACFEIRKVPYYDRVGKRSG 258

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
                 DI+E K+ ++ L +        S  K+ F++ +SHE+RTPL  I+G S ++ + 
Sbjct: 259 LMGFGRDITERKRYQDALEN-------ASREKTTFISTISHELRTPLNGIVGLSRILLDS 311

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
                 +   ++Y   I  S   + +I ND++++ K+E  K+ L  +P+     +++  +
Sbjct: 312 HL----DQEQLKYLKTIHVSAITLGNIFNDVIEMDKMERRKVQLDTQPMDFTGFLADLEN 367

Query: 674 LVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
           +  L    K +         +P  ILAD   ++QI  N++ NA+ FT  G +I++   + 
Sbjct: 368 IAGLLVEPKGLKFVLETQPPLPHKILADGTRLRQILWNLIGNAVKFTRQG-EIVVRVGYQ 426

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMGK 791
           S E +   V+D+G+G+   E +K    + Q+ + +  +   GTG+GL +++ +  +  G 
Sbjct: 427 SEECLRFDVQDSGIGIPLDEQDKIFAMYYQVKDRRGGKPATGTGIGLAVSRRLAQSMGGD 486

Query: 792 FYIFSTPAKGTLIEII 807
             +   P KG+   +I
Sbjct: 487 ISVSGAPGKGSCFTLI 502



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/229 (11%), Positives = 59/229 (25%), Gaps = 16/229 (6%)

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHT--INLNQYTKKQYFGTLQNNSK 297
           +S + E        L+     L    +  L   +      I LNQ    +     +    
Sbjct: 73  LSVVVEQLEESRQRLERLVDKLEEMRKRDLELNQQMQGNIIRLNQEIADRIKAEEERLQV 132

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKS 356
            +                ++  +     +D  P   F  +        N +  LLT    
Sbjct: 133 MARLKDEMSRREEAQIELEQQSSFLRSFLDASPDLVFYRNSDRQFSGCNRAMELLTGKSE 192

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW---NRENSLAM 413
              I         L   ++ D++A     +  +D      +  L   QW           
Sbjct: 193 KQLIG--------LSPKEVYDDDAAT--KVLETDEKVFHHNVSLTYEQWLQYPDGRKACF 242

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
                   ++  +     G   +  + +  +  +E    +  + +   S
Sbjct: 243 EIRKVPYYDRVGKRSGLMGFGRDITERKRYQDALENASREKTTFISTIS 291


>gi|218548321|ref|YP_002382112.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia fergusonii ATCC 35469]
 gi|218355862|emb|CAQ88477.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia fergusonii ATCC 35469]
          Length = 949

 Score =  300 bits (767), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 98/412 (23%), Positives = 169/412 (41%), Gaps = 30/412 (7%)

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL-CSILEATSDGIAI 467
             L +  I                 E        +  +   E  Q    I+ +   GI I
Sbjct: 313 RILILNAILLNVLVGAALFTLARMYERRIFIPAESDAQRLEEHEQFNRKIVASAPVGICI 372

Query: 468 INR-EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
           +   +G+ + +N            +  ++                 LT+I+       ++
Sbjct: 373 LRTIDGVNILSNELAHTYLNMLTHEDRQR-----------------LTQIICGQQVNFVD 415

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
                 T     L +  +  +    +     + D+S   + +  L    + AE+ S  KS
Sbjct: 416 ----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSSRVKMEESLQEMAQAAEQASQSKS 471

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
            FLA VSHE+RTPL  IIG  + +   +  P G  R       ++ S +L+L I++D+LD
Sbjct: 472 MFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR---LVTAMNNSSSLLLKIISDILD 527

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVK 705
            SKIES ++ +     S  E ++   +        K++ +      ++P  +  D   ++
Sbjct: 528 FSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFIEPDVPVTLNGDPMRLQ 587

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           Q+  N+LSNAI FT  G  II+       + + +RVRDTGVG+   E+ +   PF  +  
Sbjct: 588 QVISNLLSNAIKFTDIG-CIILHLA-RDGDYLSIRVRDTGVGIPAKEVVRLFDPFFLVGT 645

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
             Q   +GTGLGL + + +++   G   + S P  G+   I  PLY   +PH
Sbjct: 646 GVQRNFQGTGLGLAICEKLINMMDGDISVDSEPGMGSQFTIRIPLYGAQYPH 697


>gi|163739669|ref|ZP_02147078.1| multi-sensor hybrid histidine kinase [Phaeobacter gallaeciensis
           BS107]
 gi|161387128|gb|EDQ11488.1| multi-sensor hybrid histidine kinase [Phaeobacter gallaeciensis
           BS107]
          Length = 842

 Score =  300 bits (767), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 93/448 (20%), Positives = 173/448 (38%), Gaps = 27/448 (6%)

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
            +    L    +      A              +    F                     
Sbjct: 244 PVGTWQLAARPKEGWPTRADNKWQL----RFTILLAGAFILFPTALAGRLSAARRSVIQT 299

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP--VEDILRKPF 497
            +  +R++E    +L   +E +  GI  I         +  + +L+G P    D+    +
Sbjct: 300 LKRRERELEALSRRLEMAVETSKIGIWEIEDNSDSAIWDHRMRELYGDPVGSSDVPLTVW 359

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS-LRIIIKKLPFSSCYSL 556
             FL  N    + +   E L      +++          K +  +    +     +    
Sbjct: 360 RSFLHPNDRDRVINGFQEALRHVRNHSIDFRVRLENGTHKNIRAMGCSFRDSRGRNRMIG 419

Query: 557 TMHDIS-------EWKQEKNKLSHA-------KKIAEKESSHKSDFLARVSHEIRTPLTA 602
              D++       E K+   +L+H        K+ AEK    K++FLA +SHEIRTP+  
Sbjct: 420 VEWDVTRDVDLNNELKRTNQQLTHRNAQLTYAKQAAEKADQAKTEFLANMSHEIRTPMNG 479

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           IIG S+++              +  + I  S   +L I+ND+LD+S++E+GKM +     
Sbjct: 480 IIGMSDILAESPLSA----EQEQCVDTIRDSSVALLKIINDILDLSRLEAGKMEISTVDF 535

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPS 721
           +L + V  A+ +++    EK +    +FA  +P  +  D   ++QI +N+LSNA+ FT  
Sbjct: 536 NLRKCVDGAVDVLRPKLREKGLTFTQTFARELPEQVHGDDGRLRQILVNLLSNAVKFTQY 595

Query: 722 GGQ-IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
           G   + +S        + + V DTG+G++  +     + F Q   +      GTGLGL +
Sbjct: 596 GSVSLHVSRDVKDPYHLFIDVVDTGIGISEDQARHVFERFSQADAATTRHYGGTGLGLTI 655

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           +  +     G   + S   +G+   +  
Sbjct: 656 SNILAQRMGGGISLNSNEGQGSCFRLEI 683


>gi|222110689|ref|YP_002552953.1| pas/pac sensor signal transduction histidine kinase [Acidovorax
           ebreus TPSY]
 gi|221730133|gb|ACM32953.1| PAS/PAC sensor signal transduction histidine kinase [Acidovorax
           ebreus TPSY]
          Length = 465

 Score =  300 bits (767), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 82/435 (18%), Positives = 161/435 (37%), Gaps = 44/435 (10%)

Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450
             C AA        W     L                +     +      R  + K +  
Sbjct: 31  GACFAAWLWFAWDLWRGARVLNWLRQGDPTQTPRLSGLWGEAADRARRLVRQGQLKAQAG 90

Query: 451 VMQLCSILEA---TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
             +L  IL+A   + +G+ +++ EG I   N+   + FG   E   ++     +     S
Sbjct: 91  DARLQEILQALQASPNGVMLLDAEGHIEWCNQMAEEHFGLDAERDAQQSIGNLVRDPDFS 150

Query: 508 ---VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564
                  Y  +++      T  +             + + +          L+  D++  
Sbjct: 151 TYYASKDYTRDVVLPGRASTPSRPVR----------VSVHLHPYGDGRKLLLS-RDVTAL 199

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           +Q +              + + DF+A VSHEIRTPLT ++GF E ++  +   L N    
Sbjct: 200 EQAE--------------AMRRDFVANVSHEIRTPLTVLMGFVETLQTLQ---LSNEERA 242

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA----- 679
            Y   + +    + ++V DLL +S++E        E V++   +       +  +     
Sbjct: 243 RYLRMMSQQAVRMQNLVQDLLTLSRLEGSPPPSMHEWVAVSTLLRRCEDEGRALSALLTQ 302

Query: 680 ----NEKRILI-RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
                  +I       A    ++  +   ++    N+++NA+ +TP GG I ++     +
Sbjct: 303 NQPGKPHQITFPTAEAAQAAGQVAGNAAELQSALANLVNNAVRYTPPGGSITVAWDVEPD 362

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
                 VRD+G G+    L +  + F ++  S+     GTGLGL + K +V  +     +
Sbjct: 363 GSARFMVRDSGPGIEPEHLPRITERFYRVDRSRSRDTGGTGLGLAIVKHVVQRHGAALQV 422

Query: 795 FSTPAKGTLIEIIFP 809
            S   +G+   ++FP
Sbjct: 423 ASVVGQGSTFTVVFP 437


>gi|261251332|ref|ZP_05943906.1| signal transduction histidine kinase [Vibrio orientalis CIP 102891]
 gi|260938205|gb|EEX94193.1| signal transduction histidine kinase [Vibrio orientalis CIP 102891]
          Length = 639

 Score =  300 bits (767), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 74/258 (28%), Positives = 136/258 (52%), Gaps = 9/258 (3%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I++ +    +L+ AK+ AE  +  KS+FLA +SHEIRTP+  I+G + +++        +
Sbjct: 215 IAQLEINYQQLNSAKEKAEVANIKKSEFLANMSHEIRTPMNGIVGIATLLEETS----PS 270

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
                Y + +  S + +LDI+ND+LD SKIE+G  +L  EP  + + + +  +   + A 
Sbjct: 271 DIQKNYLDILTSSSSTLLDIINDILDFSKIEAGHFSLSNEPFDICQLLHQQSNEYSVRAA 330

Query: 681 EKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIII---STTHTSNEE 736
           +K+++ + +   N+P  I  D   +KQ+  N++ NA+ FT  G  I +   S     +  
Sbjct: 331 QKQLMFQCNIEPNLPNEIEGDQVRLKQVLNNLIGNALKFTQQG-HIELKVNSLHIEQHPH 389

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           + + ++DTG+G+    L    + F Q   S   +  GTGLGL ++K +V+   G+  + S
Sbjct: 390 LYIEIKDTGIGIDKDNLSSIFEKFQQADGSTTRKYGGTGLGLAISKKIVEMMGGELKVTS 449

Query: 797 TPAKGTLIEIIFPLYDTS 814
               G+      P++ T+
Sbjct: 450 EVGLGSSFYFTIPMHITN 467


>gi|197116410|ref|YP_002136837.1| response receiver sensor histidine kinase [Geobacter bemidjiensis
           Bem]
 gi|197085770|gb|ACH37041.1| response receiver sensor histidine kinase, PAS domain-containing
           protein [Geobacter bemidjiensis Bem]
          Length = 511

 Score =  300 bits (767), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 103/493 (20%), Positives = 210/493 (42%), Gaps = 49/493 (9%)

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA----SARLHTIQWNRE 408
             ++++ +        ++   K+   + ++ +   + D T +       +    +   ++
Sbjct: 36  GVEALEAVAQEP-FDLIMLDIKMPRMDGLEVLSRLKGDETPVVMMTAHGSEDIAVDAMKK 94

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468
            +L     PF   +   +     GI+    +     ++++ E  ++ ++L+  +D +  +
Sbjct: 95  GALDYISKPFSTDDMLQKVERAIGIDRTRKENARLSQQLDEERRKMEAVLQGMADLLVAV 154

Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528
           + +G I++ +R  ++L     E +L K     L+   P       T + + + R  +   
Sbjct: 155 DLQGRIITWSRQAARLLAAEGESLLGKTLEEVLKAEVPGGELPARTVLRTGEPRLDVGY- 213

Query: 529 TLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSH 584
                     + +      L  ++         + DIS+ K+ + +              
Sbjct: 214 --LLKIGSLTVPVLSSAAPLWNANGELAGSVEIIRDISKLKELEQE-------------- 257

Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
           K DF++ +SH++++P+TA++G  ++++  + GP+  P   EY N    S   ++++++ L
Sbjct: 258 KEDFVSMLSHDLKSPITAVVGSIDLVREAKLGPVT-PDQSEYLNAAIESCEEMVEMIDTL 316

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704
           L I K E+GKM L+F        ++ +++  Q  A    I +  +   ++P I AD  S 
Sbjct: 317 LGIHKFEAGKMKLNFREEDPSLLINRSVTKFQTPAQRGAISLFATLPPSLPAISADRSSF 376

Query: 705 KQIALNILSNAIHFTPSGGQIIISTTH----------------------TSNEEVILRVR 742
            +I  N+LSNA+ FTP GG+I +S                            E V +RVR
Sbjct: 377 SRILGNLLSNAVKFTPEGGEIEVSADLVQDPAPVLAHVPEECYPGQELPREGEFVRIRVR 436

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D+GVG+    L      F Q  N +Q +  GTGLGL   +  VDA+ G  +  S P  G+
Sbjct: 437 DSGVGIPQESLGSIFDRFVQARNRRQGKTRGTGLGLAFCRKAVDAHGGYIWAESEPGAGS 496

Query: 803 LIEIIFPLYDTSH 815
           +  ++FP      
Sbjct: 497 VFTLMFPALPEEE 509



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/108 (16%), Positives = 37/108 (34%), Gaps = 4/108 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D  G +   S +  + +      ++G  L +V              +L+          
Sbjct: 154 VDLQGRIITWSRQAARLLAAEGESLLGKTLEEVLKAEVPGGELPARTVLRTGEPRLDVGY 213

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRAL 196
           L  I   +L VP+  +A P+++ N E +G     I+       +    
Sbjct: 214 LLKIG--SLTVPVLSSAAPLWNANGELAG--SVEIIRDISKLKELEQE 257


>gi|152975001|ref|YP_001374518.1| multi-sensor signal transduction histidine kinase [Bacillus cereus
           subsp. cytotoxis NVH 391-98]
 gi|152023753|gb|ABS21523.1| multi-sensor signal transduction histidine kinase [Bacillus
           cytotoxicus NVH 391-98]
          Length = 591

 Score =  300 bits (767), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 75/371 (20%), Positives = 145/371 (39%), Gaps = 39/371 (10%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            ++ E  QL SIL + +DG+  +N+EG ++  N           E+      +  L    
Sbjct: 249 ALQQEKEQLSSILSSMADGVITLNQEGEVVVINPPAEHFLQVWQEE-NDLELSRNLPPE- 306

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
              +      +   + +Q +E        +   + L   +            + D++E +
Sbjct: 307 ---LVEQFHFVAESEQQQVIEMNLQ----KGNYVVLMTPLYNQTKIRGAVAVLRDMTEER 359

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + +                + DF+A VSHE+RTP+  + G+SE I +            E
Sbjct: 360 RLE--------------KMRKDFIANVSHELRTPMVMLQGYSEAILDDVVQT--KEEINE 403

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           +   I      +  +VN+LLD++++ESG + LH   V +   V +     Q  A +K + 
Sbjct: 404 FVQIIYDESVRLGRLVNELLDLARMESGHVELHMSEVEIHPFVEKIGRKFQGIAQDKGVK 463

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +   F   +     D   ++Q+  N++ NAI  T + G + +         ++  V+DTG
Sbjct: 464 LTVDFRTEVTEHTFDPDRLEQVLTNLIDNAIRHTSADGHVKLVIDKKDAG-IVFEVQDTG 522

Query: 746 VGMTNYELEKAMKPFGQIPNS-------QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
            G+   ++      F +   +           G        +AK +V ++ GK  + S  
Sbjct: 523 AGIPEEDIPFLFDRFYKADKARTRGKTGGTGLGL------AIAKNIVQSHDGKISVSSVV 576

Query: 799 AKGTLIEIIFP 809
            +GT   +  P
Sbjct: 577 GEGTTFFVYLP 587


>gi|253698665|ref|YP_003019854.1| multi-sensor signal transduction histidine kinase [Geobacter sp.
           M21]
 gi|251773515|gb|ACT16096.1| multi-sensor signal transduction histidine kinase [Geobacter sp.
           M21]
          Length = 509

 Score =  300 bits (767), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 101/493 (20%), Positives = 211/493 (42%), Gaps = 49/493 (9%)

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA----SARLHTIQWNRE 408
             ++++ +        ++   K+   + ++ +   + D T +       +    +   ++
Sbjct: 36  GVEALEAVAGEQ-FDLIMLDIKMPRMDGLEVLSRLKGDETPVVMMTAHGSEDIAVDAMKK 94

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468
            +L     PF   +   +     GI+    +     ++++ E  ++ ++L+  +D +  +
Sbjct: 95  GALDYISKPFSTDDMLQKVERAIGIDRTRKENARLSQQLDEERRKMEAVLQGMADLLVAV 154

Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528
           + +G I++ +R  ++L     E +L K     L+           T + + + R  +   
Sbjct: 155 DLQGRIITWSRQAARLLAAEGESLLGKTLEEVLKAEVAGGELPARTVLRTAEPRLDVGY- 213

Query: 529 TLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSH 584
                   + + +      L  ++         + DIS+ K+ + +              
Sbjct: 214 --LLKIGSQAVPVLSSAAPLWNANGELAGSVEIIRDISKLKELEQE-------------- 257

Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
           K DF++ +SH++++P+TA++G  ++++  + GP+  P   EY N    S   ++++++ L
Sbjct: 258 KEDFVSMLSHDLKSPITAVVGSIDLVRESKLGPVT-PDQSEYLNAAIESCEEMVEMIDTL 316

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704
           L I K E+GKM L+F        ++ + +  Q  A    I + T+   ++P I AD    
Sbjct: 317 LGIHKFEAGKMKLNFREEDPVLLINRSAAKFQTPAQRGAIRLFTTLPASLPAISADRSLF 376

Query: 705 KQIALNILSNAIHFTPSGGQIIISTTH----------------------TSNEEVILRVR 742
            +I  N+LSNA+ FTP GG+I +S                         +  E V +RVR
Sbjct: 377 SRILGNLLSNAVKFTPEGGEIEVSADLVQDPAPVLAHVPQECYPGQELPSEGEFVRIRVR 436

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D+GVG+    L      F Q  N +Q +  GTGLGL   +  +DA+ G  +  S P +G+
Sbjct: 437 DSGVGIPQESLGSIFDRFVQARNRRQGKTRGTGLGLAFCRKAMDAHGGYIWAKSEPGEGS 496

Query: 803 LIEIIFPLYDTSH 815
           +  ++FP      
Sbjct: 497 VFTVLFPALPEEE 509



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/108 (15%), Positives = 36/108 (33%), Gaps = 4/108 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D  G +   S +  + +      ++G  L +V              +L+          
Sbjct: 154 VDLQGRIITWSRQAARLLAAEGESLLGKTLEEVLKAEVAGGELPARTVLRTAEPRLDVGY 213

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRAL 196
           L  I   +  VP+  +A P+++ N E +G     I+       +    
Sbjct: 214 LLKIG--SQAVPVLSSAAPLWNANGELAG--SVEIIRDISKLKELEQE 257


>gi|91070494|gb|ABE11403.1| two-component sensor histidine kinase [uncultured Prochlorococcus
           marinus clone HOT0M-1A11]
          Length = 688

 Score =  300 bits (767), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 78/394 (19%), Positives = 176/394 (44%), Gaps = 41/394 (10%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            +++   ++  S++   +DG  +++ +G I+ TN    +LF +    +  K F   + + 
Sbjct: 288 EELKAAQIKQQSLIATMADGAILLDSQGKIVLTNPTAKRLFRWEGRFLEGKNFLNEIPEI 347

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEE-KLLSLRIIIKKLPFSSCYSLTMHDISE 563
             + ++  +  +L+ +  +   +I+LG      +++   ++          ++T+ D++ 
Sbjct: 348 LSNDLHINIESLLNREKEKDDLRISLGEPARTLRIVLQSVLDTNKIELKGIAVTIQDLTR 407

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
                           + ++ ++ F++ VSHE+RTPL  I  + E + + +   L N   
Sbjct: 408 --------------EVELNAAQNRFISNVSHELRTPLFNIKSYVETLHDLK-DQLSNEEQ 452

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
           +E+    +   + +  +VND+LD+S++ESGK+ +  E + +  A+ + +   +L A EK 
Sbjct: 453 LEFLGIANSETDRLTRLVNDVLDLSRLESGKI-IQLEEMDIKPAIEQTLRNYRLNATEKN 511

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-------- 735
           + +       IP IL +   + Q+  N++ N + F+P    ++I      +         
Sbjct: 512 VSLAHDIEETIPSILGNFDLLLQVFDNLVGNGLKFSPKNSSLMIRAYTWPDSCPAFPPDD 571

Query: 736 ---------------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
                          +V + + DTG G++  + EK    F ++ NS     +GTGLGL +
Sbjct: 572 RNHGAPQCELISPLPKVRIEITDTGSGISQADQEKIFDRFYRVENSV-HTEQGTGLGLSI 630

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
            + +++ + G+  + S    GT       L  + 
Sbjct: 631 VRGIIEKHGGEIRMASELGVGTTFWFDLSLAQSD 664


>gi|168184825|ref|ZP_02619489.1| sensory box histidine kinase [Clostridium botulinum Bf]
 gi|182672089|gb|EDT84050.1| sensory box histidine kinase [Clostridium botulinum Bf]
          Length = 615

 Score =  300 bits (767), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 89/412 (21%), Positives = 169/412 (41%), Gaps = 12/412 (2%)

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
           W     + +      +  +    +     + E    R  ++ +         ++  + D 
Sbjct: 178 WPLGYYVNIQKEDLRQKEEEVNILANKLDQKEI-QKRNMEQLLMKNENCYNLLIRNSKDA 236

Query: 465 IAIINREGIILSTNRAVSKLFGYPVED-ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
           I +  R G I+  N  + ++ GY  +           + ++    +   L  +       
Sbjct: 237 ILVH-RYGKIIFANERLKQMLGYKRDYNFEDIDIKSLIPKDQYDTVKDELENLYCGSKNI 295

Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
              +  + + KE K +                  +HD++   Q +      KK  E  + 
Sbjct: 296 VKFQHNVINNKE-KTIQNTSTYVIYDGMPTIFSILHDVTSKIQVEKLEQDVKKNIELLNE 354

Query: 584 HK------SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
            +      ++FL+ +SHE++TPL  I    + +       +   +  +Y   I ++   +
Sbjct: 355 SREYNKLITEFLSNISHELKTPLNVIFTAVQ-LLGFYEKDVDYEKQDKYLKLIKQNCYRL 413

Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697
           + ++N+LLD +K++SG + L+    ++   + E    V  YA  K I I          I
Sbjct: 414 MKLINNLLDTTKLDSGYLKLNLVNYNIVSLIEEITLSVTSYAESKGINIIFDTNVEEKII 473

Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757
             D   +++I LN+LSN+I FT  GG I +       E V + V+DTGVG+ + +LE   
Sbjct: 474 AVDTDKIERIILNLLSNSIKFTNPGGHIFVKIK-DCGENVYIHVKDTGVGIPSDKLESIF 532

Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           + F Q+  + +   EGTG+GL L K+ V+ + G  +I S   +GT   I  P
Sbjct: 533 ERFFQVDKTLKKNKEGTGIGLHLVKSFVEMHKGTVHIKSELGQGTEFIIKLP 584


>gi|126656540|ref|ZP_01727801.1| sensory box histidine kinase/response regulator [Cyanothece sp.
           CCY0110]
 gi|126622226|gb|EAZ92933.1| sensory box histidine kinase/response regulator [Cyanothece sp.
           CCY0110]
          Length = 389

 Score =  300 bits (767), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 89/381 (23%), Positives = 154/381 (40%), Gaps = 37/381 (9%)

Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520
             + + +I R+G IL+ N + S L G   + +  K     +  N+P  +  YL    S  
Sbjct: 13  LPEPMLLIARKGQILAVNPSFSNLLGLSPQIVQGKMLFDLVT-NSPDRVKQYLRNCSSSR 71

Query: 521 LRQTLEKITLGSTKEEKLLSLR-IIIKKLPFSSCYSLTMH-------------------- 559
                         E  +       I          + +                     
Sbjct: 72  EMVLGSLAWSTKNGETCVCRCEGAAICPSSPEFPTLILLRLKKRESASTRFTLLNKKIDE 131

Query: 560 ---DISEWKQEKNKL-------SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
              +I   ++ + +          A+  AE  +  K +FL+ +SHE+RTPL AI+G+S +
Sbjct: 132 LAKEIRLRQRAEEERAKLLVQEQKARAEAENMNRLKDEFLSTISHELRTPLNAILGWSGI 191

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           ++++    L           I+R+      ++ DLLD+S+I +G+M LH   + L   + 
Sbjct: 192 LQSKN---LDEAEIRRALEIIERNAKSQAHLIEDLLDVSQIVTGRMRLHVRAIELLPVIE 248

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
            AI  ++  A+ K I ++         +L D   ++QI  N+LSNA+ FTP  G + I+ 
Sbjct: 249 AAIDTLKPAADAKNIRLQAVLDPAASPVLGDSERLQQIVWNLLSNAVKFTPKHGCVQIAL 308

Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
               N  V + V DTG G++   L    + F Q   S      G GLGL + + +V+ + 
Sbjct: 309 QQI-NSHVEIVVADTGQGISAEFLPYVFERFRQANTSMTRSFGGLGLGLAIVRQLVELHG 367

Query: 790 GKFYIFS-TPAKGTLIEIIFP 809
           G     S    +G    +  P
Sbjct: 368 GTVQAESPGEGQGATFTVKLP 388


>gi|323976120|gb|EGB71213.1| phosphate regulon sensor kinase PhoR [Escherichia coli TW10509]
          Length = 431

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 73/427 (17%), Positives = 152/427 (35%), Gaps = 37/427 (8%)

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             +L       I     L  + W     L +         +        G+    +  + 
Sbjct: 33  WFLLASVTGLLIWHFWNLLRLSW----WLWVDRSMTPPPGRGSWEPLLYGLHQMQLRNKK 88

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            +R++   + +  S  E+  D + +   EG I   N    ++ G    +   +     L 
Sbjct: 89  RRRELGNLIKRFRSGAESLPDAVVLTTEEGGIFWCNGLAQQILGLRWPEDNGQNILNLLR 148

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
               +               +   +         + L +R++           +   D++
Sbjct: 149 YPEFTQYL----------KTRDFSRPLNLVLNTGRHLEIRVMPYTHKQ---LLMVARDVT 195

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  Q +                + +F A VSHE+RTPLT + G+ E++  Q        +
Sbjct: 196 QMHQLEG--------------ARRNFFANVSHELRTPLTVLQGYLEMMDEQPLQGAVREK 241

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                + +      +  +V  LL +SKIE+    L  E V +   +       Q  + +K
Sbjct: 242 A---LHTMREQTQRMEGLVKQLLTLSKIEAAPTQLLNEKVDVPMMLRVVEREAQTLSQKK 298

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           +        N++ ++  +   ++    N++ NA++ TP G  I +      +      V 
Sbjct: 299 Q-TFTFEIDNDL-KVSGNEDQLRSAISNLVYNAVNHTPEGTHITVRWQRVPHG-AEFSVE 355

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G G+    + +  + F ++  ++  +  G+GLGL + K  V+ +  + +I ST  KGT
Sbjct: 356 DNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHAVNHHESRLHIESTVGKGT 415

Query: 803 LIEIIFP 809
               + P
Sbjct: 416 RFSFVIP 422


>gi|218891870|ref|YP_002440737.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           LESB58]
 gi|218772096|emb|CAW27875.1| probable sensor/response regulator hybrid [Pseudomonas aeruginosa
           LESB58]
          Length = 699

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 89/571 (15%), Positives = 189/571 (33%), Gaps = 40/571 (7%)

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ--NNSKESFEYLSHRNHPSLSAYFD 316
                                  + +       LQ  ++S+     +     P +     
Sbjct: 4   AGRAEVFRKVGQVPGASQRAAGRRSSYYLAGCALQPGSSSRRVNTSMKTTRKPKVPLNQA 63

Query: 317 EGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
               L  E VD   I   + S G +   +     L  + + + +      +         
Sbjct: 64  TRNRLLDEAVDDYAIH-TLDSAGRIASWSAGAARLFGHDASEILGR--DYACFHTRKDRD 120

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
                + +    ++            ++ N +   A   I     +   + +    +  +
Sbjct: 121 AGVPQQALRQADAEGR---FETEGWRVRSNGKRFWAQVVIDAI-RDSQGQLLGFAQLIHD 176

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
             + R  K  +     Q   ++++ +D  I +++  G I + N    ++ GY  E+++ +
Sbjct: 177 LSEGRAAKEALRRSQEQFRLLVQSVTDYAIYMLDHRGRITNWNLGAQRIKGYLPEEVIGR 236

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555
            F+ F               + + +     EK      K+       ++I  +  S    
Sbjct: 237 HFSCFYTPEDREAGEPA-RGLTAAEREGRFEKEGWRVRKDGSRFWANVVIDPIRDSDGRL 295

Query: 556 L----TMHDISEWKQEKNKLSHAKKIAEKESSH--KSDFLARVSHEIRTPLTAIIGFSEV 609
           +       DI+   + + +L  A++   +             V+H+    LT IIG   +
Sbjct: 296 IGFAKVTRDITHRIEAERELERARQELFQAQKMESLGHLTGGVAHDFNNLLTVIIGSLGL 355

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           +K +  G   + R  +       +     ++   +L  ++    K  L  +P ++ + + 
Sbjct: 356 LKKRLPG---DQRTADLLQNALEAAQRGANLTQRMLSFAR----KQRLDPQPCAIPDLLR 408

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
               L+        + I T F  ++   L D   ++   +N+ +NA    P+GG+I+ S 
Sbjct: 409 GMTDLLIHSL-GPSVSIETRFPLDLDLGLTDANQLELSIINLATNARDAMPNGGRIVFSA 467

Query: 730 -----------THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
                             + L + DTG GM    L +A++PF          G GTGLGL
Sbjct: 468 SNQRVPADNPHRLAPGNYICLSISDTGSGMDEETLRRAVEPFYTTKG----IGRGTGLGL 523

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            +   + +   G+  + S P  GT   I  P
Sbjct: 524 SIVDGLAEQLGGRLTLESQPGVGTTANIWIP 554



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/244 (10%), Positives = 73/244 (29%), Gaps = 8/244 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D+ G +   S    +  G+ A +++G            D       L +       +T 
Sbjct: 81  LDSAGRIASWSAGAARLFGHDASEILGRDYACFHTRKDRDAGVPQQALRQADAEGRFETE 140

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
            W +          +    I     +  GF    ++H        +   +R  ++F  L 
Sbjct: 141 GWRVRSNGKRFWAQVVIDAIRDSQGQLLGFAQ--LIHDLSEGRAAKEALRRSQEQFRLLV 198

Query: 209 EIKKGHSS-VEKEKYDIFSQQSPPPHLR--MKNKVSS--LTEYYAHKDDVLKTEKYPLLT 263
           +    ++  +   +  I +       ++  +  +V     + +Y  +D         L  
Sbjct: 199 QSVTDYAIYMLDHRGRITNWNLGAQRIKGYLPEEVIGRHFSCFYTPEDREAGEPARGLTA 258

Query: 264 SEESSLPEQEDFH-TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
           +E     E+E +    + +++        ++++      +       +     +      
Sbjct: 259 AEREGRFEKEGWRVRKDGSRFWANVVIDPIRDSDGRLIGFAKVTRDITHRIEAERELERA 318

Query: 323 PETV 326
            + +
Sbjct: 319 RQEL 322



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/239 (10%), Positives = 50/239 (20%), Gaps = 5/239 (2%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + +D  G +   +    +  G    ++IG            +       L   +     
Sbjct: 206 IYMLDHRGRITNWNLGAQRIKGYLPEEVIGRHFSCFYTPEDREAGEPARGLTAAEREGRF 265

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +   W +         ++   PI   +    GF       V R         + L++   
Sbjct: 266 EKEGWRVRKDGSRFWANVVIDPIRDSDGRLIGF-----AKVTRDITHRIEAERELERARQ 320

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
            L + +K  S             +    +     +         +   L           
Sbjct: 321 ELFQAQKMESLGHLTGGVAHDFNNLLTVIIGSLGLLKKRLPGDQRTADLLQNALEAAQRG 380

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
            +       F                L+  +      L            D    LT  
Sbjct: 381 ANLTQRMLSFARKQRLDPQPCAIPDLLRGMTDLLIHSLGPSVSIETRFPLDLDLGLTDA 439


>gi|170016544|ref|YP_001727463.1| Signal transduction histidine kinase [Leuconostoc citreum KM20]
 gi|169803401|gb|ACA82019.1| Signal transduction histidine kinase [Leuconostoc citreum KM20]
          Length = 623

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 77/453 (16%), Positives = 167/453 (36%), Gaps = 40/453 (8%)

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAAS-ARLHTIQWNRENSLAMTFIPFEKANQFPE 426
            L     +        + L+ +             T +    +   +       +++   
Sbjct: 183 RLFVIAGILALMVSIALALFLARTLTRPIEQIDEQTTKIANGDYSMVNH--IYGSDELGH 240

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
                      V+          E  +L S+L   +DG+   NR G +   N+A +   G
Sbjct: 241 LAQSVNELSTRVEESTETVNA--ERNRLDSVLTHMADGVLAANRRGEVTIINQAAADFVG 298

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
              +  + +     L+      +   L  +    +        L    ++ L+   + + 
Sbjct: 299 VDRDAAIGQNVIELLQLKGKRTLRDMLENLDDFRVD-------LSDDSKDLLVQAYVSLI 351

Query: 547 KLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
           K      S   + +H+I+E ++   +                 F++ VSHE+RTPLT++ 
Sbjct: 352 KRQSGFISGLVVVLHNITEQQRIDAERRM--------------FVSNVSHELRTPLTSVR 397

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
            + + +               +   +      ++ ++NDLL++S+++ G M +  E ++L
Sbjct: 398 SYVDALAEGAIN--DPEMAHNFLGVVQNETQRMIRMINDLLELSRLDQGTMAVKLEVINL 455

Query: 665 DEAVSEAISLVQLYANE---------KRILIRTSFANNIPRILADLRSVKQIALNILSNA 715
           +   +  ++   +             K   I+  F +    +  D     Q+  NI++NA
Sbjct: 456 NSLFNFVLNRFDMIIENDAKNTETPNKNYSIQREFTSEDVWVEVDPDKFTQVLDNIMNNA 515

Query: 716 IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           + ++P GG I       +    IL + D G+G+   +L      F ++  S+     GTG
Sbjct: 516 VKYSPDGGVITARL-IKTKTRAILSISDQGLGIPKKDLNNIFNRFFRVDKSRSRAQGGTG 574

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           LGL ++K +V+   G+ ++ S   +G+   I  
Sbjct: 575 LGLAISKEVVEKFNGRIWVDSVENQGSTFYISL 607


>gi|254785340|ref|YP_003072769.1| signal transduction histidine-protein kinase BarA [Teredinibacter
           turnerae T7901]
 gi|237685431|gb|ACR12695.1| signal transduction histidine-protein kinase BarA [Teredinibacter
           turnerae T7901]
          Length = 932

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 92/243 (37%), Positives = 136/243 (55%), Gaps = 10/243 (4%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  A+K A + S  KS+FLA  SHEIRTPL  I+GFSE++K     PL      +Y   
Sbjct: 255 ELDIARKGAIQASKVKSEFLANTSHEIRTPLNGILGFSELLKKTELNPL----QEDYLET 310

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I  S   +L I+ND+LD S++E+GK+ L ++PV L + + EA+ L    A+EK++ + T 
Sbjct: 311 IYESAKGLLTIINDILDFSRLETGKLTLEYKPVRLRQVLEEALRLQAPAAHEKKLRLLTI 370

Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDT 744
             ++IP  +L D   +KQ+  N+LSNAI FT  G  I+IS +     +    +  R+ D+
Sbjct: 371 VDHDIPEHLLGDPLRLKQVLTNLLSNAIKFTNVG-HILISVSKEDRADNQITLQFRITDS 429

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G+   + EK    F Q+  S      GTGLGL +AK +VD   G+  + S P KG   
Sbjct: 430 GIGLNQDQQEKLFDAFTQLDASDSRTHGGTGLGLAIAKGLVDRMHGEIGVESEPGKGATF 489

Query: 805 EII 807
              
Sbjct: 490 WFT 492


>gi|167625908|ref|YP_001676202.1| histidine kinase [Shewanella halifaxensis HAW-EB4]
 gi|167355930|gb|ABZ78543.1| histidine kinase [Shewanella halifaxensis HAW-EB4]
          Length = 885

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 81/251 (32%), Positives = 138/251 (54%), Gaps = 7/251 (2%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I+E  Q   K+  AK+ AEK +  KS FLA +SHEIRTPL  IIG S+++   +     N
Sbjct: 359 INERHQNVLKILQAKQEAEKANQAKSSFLANMSHEIRTPLNGIIGMSDIMAGTKLTATQN 418

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
               EY   I+ S   +L ++ND+LD+SKIESG +++      + E V + +++V     
Sbjct: 419 ----EYLQTIETSSQTLLILINDILDLSKIESGNLSITNTDADITEVVYDTLTIVLAKIA 474

Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNE-EV 737
           EK + +     N+ P  I  D   ++Q+ +N+LSNA+ FT  GG +++IS ++T++  ++
Sbjct: 475 EKNLTLEVEIDNDTPYLISLDEHRMRQVLVNLLSNAVKFTHEGGVKVVISCSNTADYCDL 534

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
           ++ + D+G+G+   + +    PF Q  ++      GTGLGL + K ++    G+  + S 
Sbjct: 535 LISIHDSGIGIAKEKQQHIFSPFTQEDDTTTREFGGTGLGLAICKQLITLMGGEISLISE 594

Query: 798 PAKGTLIEIIF 808
             +G    I  
Sbjct: 595 KGEGCCFSIKL 605


>gi|77918661|ref|YP_356476.1| two component hybrid sensor histidine kinase [Pelobacter
           carbinolicus DSM 2380]
 gi|77544744|gb|ABA88306.1| Hpt sensor hybrid histidine kinase [Pelobacter carbinolicus DSM
           2380]
          Length = 1014

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 80/272 (29%), Positives = 140/272 (51%), Gaps = 13/272 (4%)

Query: 544 IIKKLPFSSCYSLTM----HDISEWKQEK-NKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
            I+ LP S      +      ++E  Q    +L  A++ AE+ S  KS FL  +SHEIRT
Sbjct: 313 TIEWLPDSDNEIGILNRSLQAMTEQLQSSIQELQQARQHAEEASRAKSQFLVNMSHEIRT 372

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
           P+  +IG +E++ +            + A+ +  SG  +L I+ND+LD SK+E+GK+ L 
Sbjct: 373 PMNGVIGMTELLLDSPLA----EEQRQIADTVAESGRALLQIINDILDFSKLEAGKLQLE 428

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIH 717
             P  +   V EA  L    A  K + +    A+++P +L  D   ++Q+ +N+LSNA+ 
Sbjct: 429 NIPFDICGIVEEAAGLFAAKAQTKGLELVVDMADDVPPLLLGDPGRLRQVLVNLLSNALK 488

Query: 718 FTPSGGQ-IIISTTH--TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           FT  G   + +   H    +  +++ +RD+G+G+    + +  +PF Q   S   +  GT
Sbjct: 489 FTKQGYVLVTLRAHHITEQSATIVVSIRDSGIGIEPQHIPQLFRPFSQADGSTTRKYGGT 548

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           GLGL + + ++    G+ ++FS P +G+    
Sbjct: 549 GLGLSICQDLIGHMGGQIHVFSQPGQGSNFWF 580


>gi|163743847|ref|ZP_02151219.1| sensory box sensor histidine kinase/response regulator [Phaeobacter
           gallaeciensis 2.10]
 gi|161382885|gb|EDQ07282.1| sensory box sensor histidine kinase/response regulator [Phaeobacter
           gallaeciensis 2.10]
          Length = 842

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 93/448 (20%), Positives = 173/448 (38%), Gaps = 27/448 (6%)

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
            +    L    +      A              +    F                     
Sbjct: 244 PVGTWQLAARPKEGWPTRADNKWQL----RFTILLAGAFILFPTALAGRLSAARRSVIQT 299

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP--VEDILRKPF 497
            +  +R++E    +L   +E +  GI  I         +  + +L+G P    D+    +
Sbjct: 300 LKRRERELEALSRRLEMAVETSKIGIWEIEDNSDSAIWDHRMRELYGDPVGSSDVPLTVW 359

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS-LRIIIKKLPFSSCYSL 556
             FL  N    + +   E L      +++          K +  +    +     +    
Sbjct: 360 RSFLHPNDRDRVINGFQEALRHVRNHSIDFRVRLENGTHKNIRAMGCSFRDSRGRNRMIG 419

Query: 557 TMHDIS-------EWKQEKNKLSHA-------KKIAEKESSHKSDFLARVSHEIRTPLTA 602
              D++       E K+   +L+H        K+ AEK    K++FLA +SHEIRTP+  
Sbjct: 420 VEWDVTRDVDLNNELKRTNQQLTHRNAQLTYAKQAAEKADQAKTEFLANMSHEIRTPMNG 479

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           IIG S+++              +  + I  S   +L I+ND+LD+S++E+GKM +     
Sbjct: 480 IIGMSDILAESPLSA----EQEQCVDTIRDSSVALLKIINDILDLSRLEAGKMEISTVDF 535

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPS 721
           +L + V  A+ +++    EK +    +FA  +P  +  D   ++QI +N+LSNA+ FT  
Sbjct: 536 NLRKCVDGAVDVLRPKLREKGLTFTQTFARELPEQVHGDDGRLRQILVNLLSNAVKFTQY 595

Query: 722 GGQ-IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
           G   + +S        + + V DTG+G++  +     + F Q   +      GTGLGL +
Sbjct: 596 GSVSLHVSRDVKDPYHLFIDVVDTGIGISEDQARHVFERFSQADAATTRHYGGTGLGLTI 655

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           +  +     G   + S   +G+   +  
Sbjct: 656 SNILAQRMGGGISLNSNEGQGSCFRLEI 683


>gi|194364514|ref|YP_002027124.1| Hpt sensor hybrid histidine kinase [Stenotrophomonas maltophilia
           R551-3]
 gi|194347318|gb|ACF50441.1| Hpt sensor hybrid histidine kinase [Stenotrophomonas maltophilia
           R551-3]
          Length = 1074

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 96/650 (14%), Positives = 197/650 (30%), Gaps = 45/650 (6%)

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY 246
            R    P A  +           +     +      ++  +                 + 
Sbjct: 79  ARGQPIPDASVELQRGPLFADFALIGDEGTRSPAPTELGDRFLRFYGSFWSASHYPPPQC 138

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
                   +    P+  +   +           +    +             ++  +  R
Sbjct: 139 LLVDGQGTRGLLAPVQMTGADASQNSPHHLRPAIADIHRVLGAQPSLQRGGIAWVAVPWR 198

Query: 307 NHPSLSAYFDEGENLTP----ETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEI 362
           +  +                            +   G +      +  +        + +
Sbjct: 199 DRQTRLLAIAHAPQDARLWGQTEEGSLAALACLLDPGRV----DDYRQVLGVPVFQRLSL 254

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
                  L     +D +          D       +    +     +   +   P     
Sbjct: 255 FDASGRRLLGDG-ADISDAGTSWQAGLDGLRFLMRSERGWLAVYHVSWRQIFQHPQGPLL 313

Query: 423 QFPENMPQNGIEPEDVDT----------RINKRKMEIEVMQLCSILEATSDGIAIINR-E 471
                     +    V            R N  ++        +IL+    G+ ++ R +
Sbjct: 314 GAVLVALLLALGGTLVLRAYRRSVIEPLRSNHARLLESEAFSRTILDNAPIGLCLLRRAD 373

Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
           G +L  N       G                      +       L   L          
Sbjct: 374 GNVLLDNALARSWLGED-------HLGGGWHGPWRRSVMAAGGTTLGDGLA--------Y 418

Query: 532 STKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
           +T + + L ++    +            D+S   + +  L  A++ A++ +  KS FLA 
Sbjct: 419 NTPDGRHLLVKATPARYRGEPAVLCLFIDLSSQHEAEQVLQQARRAADQANRAKSQFLAT 478

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           +SHEIRTPL  ++G  E++         + R   Y   I RS + ++ +++D+LD+SK E
Sbjct: 479 MSHEIRTPLYGVLGTLELLGLTPL----DARQQHYLATIQRSSSTLMQLISDILDVSKAE 534

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALN 710
           +G+++L   P        +A+      A  K +        ++P  +  D   ++QI  N
Sbjct: 535 AGQLSLEPSPFDPVRLTEDALDSYAAAAANKGLQFYACIDADVPASVCGDAARIRQILNN 594

Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
           ++SNA+ FT SG  ++  +    ++   L  +V DTG+G+ +       +PF Q      
Sbjct: 595 LISNALKFTDSGRVVVRGSVRWQDQRCWLQWQVTDTGIGIASEHQSHLFEPFFQANPG-T 653

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
               GTGLGL +   + +   G   + S    G+   +  PL   + P D
Sbjct: 654 DAMRGTGLGLAICAHLAELMDGHLRVVSESGLGSSFSVELPL--PTAPPD 701


>gi|167590631|ref|ZP_02383019.1| multi-sensor hybrid histidine kinase [Burkholderia ubonensis Bu]
          Length = 985

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 118/660 (17%), Positives = 205/660 (31%), Gaps = 44/660 (6%)

Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS 242
           ++             +        L  +   + +     Y     Q              
Sbjct: 75  VMREFAAGQGKIVRYRFGRAAAVGLANLSPENPARLYSPYLALIVQQFDAIATQVPVDVG 134

Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY-FGTLQNNSKESFE 301
           L+ Y       L     P+L     +LP       +                  + +   
Sbjct: 135 LSGYLISLYGDLLGVFDPILVDRALALPAGHALEILIGELLPSSARIVTQTPGMTGKDGI 194

Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLF----YANPSFLLLTKY--K 355
            L  R  P L         L  +  D  P+  +   +G        A+ +          
Sbjct: 195 VLESRVDPLLGRRVLRFVRLVYD-ADGKPVA-WAVINGRARIDDMLASRAIDETCALIGS 252

Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL--HTIQWNRENSLAM 413
             + +  A     L+              +           S R+    +      S   
Sbjct: 253 GGNVLAGAQPDGKLIAKALDHAREPSGEHVTAHRVGARFVVSDRMPESDLVLMGTFSWRS 312

Query: 414 TFIPFEKANQFPENMPQNGIE-----------PEDVDTRINKRKMEIEVMQLCSILEATS 462
                              I                       ++        +++ A  
Sbjct: 313 IVAAIAVPAGATAGTALVAIALLWLAIMLFDRRALRPANRRAMRLIESEALNRTLIRAAP 372

Query: 463 DGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
            GI +++  +G  + +N  + +      E  L K                Y         
Sbjct: 373 TGIMLLSLADGETMVSNDTMREYEQAASEPPLGKRIW-----------QAYRDSARGPGA 421

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKK--LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579
            + +         +     L   + +           T+ D++  K+ + KL  A++ AE
Sbjct: 422 PRVMTHELAVELADHGSTYLAANVVRTRYRGVDVLLCTLLDVTARKRTELKLREAREAAE 481

Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639
             +  KS FLA +SHEIRTPL AIIG  E++      P            I  S + +L 
Sbjct: 482 DANRAKSTFLATMSHEIRTPLNAIIGNLELMARASLPPSE----RRRLKTIASSSDALLR 537

Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-IL 698
           ++ND+LD+SK ES +M L   P  L + + +  ++ +  A+ K + +    A ++    L
Sbjct: 538 VINDVLDLSKAESNQMALECIPFDLRDLLRDVAAIFRPVADAKHLTLDCRMAADLADGYL 597

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQII---ISTTHTSNEEVILRVRDTGVGMTNYELEK 755
            D   ++Q+  N++ NAI FT  GG  I   ++T       V + VRDTG+G+    L  
Sbjct: 598 GDPTRLRQLVSNLVGNAIKFTKRGGVTIDARVATDAAGARRVAIAVRDTGIGIPEDALPN 657

Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
               + Q   S   R  GTGLGLPL   +     G+  + S   +GT      PL +   
Sbjct: 658 LFDVYMQADPSIYRRFGGTGLGLPLCGRIARLMHGELTVESRVDEGTTFVAALPLPEAPA 717


>gi|255004059|ref|ZP_05278860.1| histidine kinase sensor protein (barA) [Anaplasma marginale str.
           Virginia]
          Length = 442

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 98/256 (38%), Positives = 154/256 (60%), Gaps = 1/256 (0%)

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
           Y  +   +S       +L   K+ AE+ES  KS FLA VSHE+RTPL +IIGFSE+I+++
Sbjct: 176 YRRSARLLSSQYDANLELQEQKETAERESVSKSQFLANVSHELRTPLNSIIGFSEIIQSE 235

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
             GP+G+  Y EY N I +SG  +L ++ND+LD SK E+ K+ + F    L + V  + +
Sbjct: 236 SLGPIGSEEYKEYINDIHQSGVHLLSLINDILDFSKAEANKLTVEFVKFDLGKIVDSSFT 295

Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
           +V   A + ++ ++         +LAD + +KQ+ +N+LSN++ FTP GG + +      
Sbjct: 296 MVLPRAKDAKVELKKEMPEEPIVMLADPKRMKQVIINVLSNSVKFTPEGGLVKLCAEIR- 354

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
            E++I+ + DTG+G+   +L K M  FGQ  ++   + EGTGLGLPL+K +V+   G F 
Sbjct: 355 GEQLIVEISDTGIGIAQQDLYKVMSVFGQADSTHSRKYEGTGLGLPLSKKLVELMQGTFS 414

Query: 794 IFSTPAKGTLIEIIFP 809
           I S P  GT++ + FP
Sbjct: 415 IKSEPNLGTIVTLTFP 430


>gi|222474959|ref|YP_002563374.1| histidine kinase sensor protein (barA) [Anaplasma marginale str.
           Florida]
 gi|222419095|gb|ACM49118.1| histidine kinase sensor protein (barA) [Anaplasma marginale str.
           Florida]
          Length = 474

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 98/256 (38%), Positives = 154/256 (60%), Gaps = 1/256 (0%)

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
           Y  +   +S       +L   K+ AE+ES  KS FLA VSHE+RTPL +IIGFSE+I+++
Sbjct: 208 YRRSARLLSSQYDANLELQEQKETAERESVSKSQFLANVSHELRTPLNSIIGFSEIIQSE 267

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
             GP+G+  Y EY N I +SG  +L ++ND+LD SK E+ K+ + F    L + V  + +
Sbjct: 268 SLGPIGSEEYKEYINDIHQSGVHLLSLINDILDFSKAEANKLTVEFVKFDLGKIVDSSFT 327

Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
           +V   A + ++ ++         +LAD + +KQ+ +N+LSN++ FTP GG + +      
Sbjct: 328 MVLPRAKDAKVELKKEMPEEPIVMLADPKRMKQVIINVLSNSVKFTPEGGLVKLCAEIR- 386

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
            E++I+ + DTG+G+   +L K M  FGQ  ++   + EGTGLGLPL+K +V+   G F 
Sbjct: 387 GEQLIVEISDTGIGIAQQDLYKVMSVFGQADSTHSRKYEGTGLGLPLSKKLVELMQGTFS 446

Query: 794 IFSTPAKGTLIEIIFP 809
           I S P  GT++ + FP
Sbjct: 447 IKSEPNLGTIVTLTFP 462


>gi|56416592|ref|YP_153666.1| histidine kinase sensor protein [Anaplasma marginale str. St.
           Maries]
 gi|255002934|ref|ZP_05277898.1| histidine kinase sensor protein (barA) [Anaplasma marginale str.
           Puerto Rico]
 gi|56387824|gb|AAV86411.1| histidine kinase sensor protein [Anaplasma marginale str. St.
           Maries]
          Length = 468

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 98/256 (38%), Positives = 154/256 (60%), Gaps = 1/256 (0%)

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
           Y  +   +S       +L   K+ AE+ES  KS FLA VSHE+RTPL +IIGFSE+I+++
Sbjct: 202 YRRSARLLSSQYDANLELQEQKETAERESVSKSQFLANVSHELRTPLNSIIGFSEIIQSE 261

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
             GP+G+  Y EY N I +SG  +L ++ND+LD SK E+ K+ + F    L + V  + +
Sbjct: 262 SLGPIGSEEYKEYINDIHQSGVHLLSLINDILDFSKAEANKLTVEFVKFDLGKIVDSSFT 321

Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
           +V   A + ++ ++         +LAD + +KQ+ +N+LSN++ FTP GG + +      
Sbjct: 322 MVLPRAKDAKVELKKEMPEEPIVMLADPKRMKQVIINVLSNSVKFTPEGGLVKLCAEIR- 380

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
            E++I+ + DTG+G+   +L K M  FGQ  ++   + EGTGLGLPL+K +V+   G F 
Sbjct: 381 GEQLIVEISDTGIGIAQQDLYKVMSVFGQADSTHSRKYEGTGLGLPLSKKLVELMQGTFS 440

Query: 794 IFSTPAKGTLIEIIFP 809
           I S P  GT++ + FP
Sbjct: 441 IKSEPNLGTIVTLTFP 456


>gi|28899864|ref|NP_799519.1| putative two-component sensor [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260880452|ref|ZP_05892807.1| histidine kinase [Vibrio parahaemolyticus AN-5034]
 gi|28808147|dbj|BAC61352.1| putative two-component sensor [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308092209|gb|EFO41904.1| histidine kinase [Vibrio parahaemolyticus AN-5034]
          Length = 632

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 73/260 (28%), Positives = 129/260 (49%), Gaps = 8/260 (3%)

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
             + + ++ + +L   +  AE  +  KS+FLA +SHEIRTP+  IIG + ++ + +    
Sbjct: 218 RSVQKVREHQAELEAERDKAEVANRKKSEFLATMSHEIRTPMNGIIGVASLLSDTKL--- 274

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
            +P+  E+   ID S   ++ I++D+LD SK+E+GK+ L  E     + + + ISL  + 
Sbjct: 275 -DPQQKEFVEIIDNSSQSLMTIIDDILDFSKVEAGKVELASETYHFRQLLDDVISLHTVK 333

Query: 679 ANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQ---IIISTTHTSN 734
           A +K + + +     +P  +  D   +KQ+  N+LSNA+ FT  G     + +   +   
Sbjct: 334 AQQKNLQLLSDIDPKLPAEVQGDEGRLKQVLNNLLSNAVKFTERGHVKLLVSLHEQNNDI 393

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
            +V  RV D+G+G+     +   + F Q   S   +  GTGLGL +   +V    G   +
Sbjct: 394 AQVRFRVVDSGIGIAKEHQQAVFERFQQADGSTTRKYGGTGLGLAICAQLVHIMGGDIKL 453

Query: 795 FSTPAKGTLIEIIFPLYDTS 814
            S    G+  +   PL   S
Sbjct: 454 TSELGLGSCFDFTIPLTVVS 473


>gi|262173944|ref|ZP_06041621.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio mimicus
           MB-451]
 gi|261891302|gb|EEY37289.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio mimicus
           MB-451]
          Length = 857

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 79/371 (21%), Positives = 160/371 (43%), Gaps = 21/371 (5%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           R++  +  Q   +         + N  G ++  N +    F              FL + 
Sbjct: 350 RRLANKEKQFEDLFNFALSPTMLWNTAGRLIRMNPSAQIQFLREDAQ------NHFLFEI 403

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT-MHDISE 563
               +   +T          +         + ++    +    +       +T   D++ 
Sbjct: 404 LERQLLPMITYAAQGKNPSEVTTEV-----DGRVYRWNLSPIMVEGQIISIITQGQDVTS 458

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + + +   A++ AE+ +  +++FLA++SHE+RTPL  ++G S+++K            
Sbjct: 459 IAEAEKQSQVARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRTPL----TDEQ 514

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            E+   +  SG  +L ++ND+LD S++E GK  +      L E V     + +   N+K 
Sbjct: 515 REHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKSEFRLKELVCAIDRIYRPLCNDKG 574

Query: 684 ILIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EVIL 739
           I +       ++  + +D   + QI  N+L+NAI FT  G  I ++      +   ++++
Sbjct: 575 IELVVESNITSVTLVRSDQIRINQILFNLLNNAIKFTHQGS-IRVALELIEGDPLAQLVI 633

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
           +V DTG+G+   +L    +PF Q  ++      G+GLGL +  ++V+   G+ ++ S   
Sbjct: 634 QVMDTGIGIREEDLTVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHVSSEYG 693

Query: 800 KGTLIEIIFPL 810
            GT  EI  P+
Sbjct: 694 HGTRFEIQLPI 704


>gi|290580114|ref|YP_003484506.1| putative histidine kinase [Streptococcus mutans NN2025]
 gi|254997013|dbj|BAH87614.1| putative histidine kinase [Streptococcus mutans NN2025]
          Length = 450

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 83/377 (22%), Positives = 158/377 (41%), Gaps = 35/377 (9%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           R+    +  E  +L SIL   +DG+   +R G I   N    K      E  L       
Sbjct: 83  RLTHENLAQEKNRLTSILSYMTDGVLATDRRGKITVINDMAQKQLNVTREQALECNILDI 142

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS----L 556
           L+ ++            +  + +T E +     + ++ ++LRI        S +      
Sbjct: 143 LDDDSY---------TYNDLITKTPEIVLTRRDEYDEFITLRIRFALNRRESGFISGLIA 193

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            +HD +E ++E+ +                 F++ VSHE+RTPLT++  + E +     G
Sbjct: 194 VLHDATEQEKEERERRL--------------FVSNVSHELRTPLTSVKSYLEAL---DDG 236

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV- 675
            L       +        N ++ ++ DLL +S+I++   +L  E  +    ++  +    
Sbjct: 237 ALTESVAPSFIKVSLDETNRMMRMITDLLSLSRIDNQTSHLDVELTNFTAFMNYILDRFD 296

Query: 676 ---QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
                 +  K   I   + +    I  D   + Q+  NIL+NAI ++P GG++ ++   T
Sbjct: 297 QIQSQQSTNKVYEIIRDYPDKSVWIEIDTDKMTQVIDNILNNAIKYSPDGGKVTVTMQTT 356

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
              ++IL + D G+G+   +L      F ++  ++     GTGLGL +AK +V  + G  
Sbjct: 357 DT-QLILSISDQGLGIPKKDLPLIFDRFYRVDKARSRAQGGTGLGLAIAKEIVKQHKGFI 415

Query: 793 YIFSTPAKGTLIEIIFP 809
           +  S   +G+   I+ P
Sbjct: 416 WANSEEGEGSTFTIVLP 432


>gi|47569150|ref|ZP_00239838.1| sensor histidine kinase SrrB, putative [Bacillus cereus G9241]
 gi|47554221|gb|EAL12584.1| sensor histidine kinase SrrB, putative [Bacillus cereus G9241]
          Length = 580

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 80/371 (21%), Positives = 154/371 (41%), Gaps = 39/371 (10%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            ++ E  QL SIL + +DG+  +N+EG ++  N           E+       + L +  
Sbjct: 238 ALQQEKEQLASILSSMADGVITLNQEGEVVVINPPAEHFLQVWQEEK-----EIELSKKL 292

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
           PS +      ++  + +Q +E        +   + L   +            + D++E +
Sbjct: 293 PSELVKLFHLVVESEQQQVVEINLQ----KGNYVVLMTPLYNQTKIRGAVAVLRDMTEER 348

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + +                + DF+A VSHE+RTP+  + G+SE I +            E
Sbjct: 349 RLE--------------KMRQDFIANVSHELRTPMVMLQGYSEAILDDIVQT--KEEINE 392

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           +   I      +  +VN+LLD++++ESG + LH   V +   V +     Q  A +K + 
Sbjct: 393 FVQIIYDESVRLGKLVNELLDLARMESGNVELHIGEVDIHPFVEKIGRKFQGIAKDKEVA 452

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +   F + I +   D   ++Q+  N++ NAI  T +GG + +     +N  +I  V+D+G
Sbjct: 453 LTVDFKDPIEQYPFDADRMEQVLTNLIDNAIRHTNAGGHVTLVIDTKNNG-LIFEVQDSG 511

Query: 746 VGMTNYELEKAMKPFGQIPNSQQI-------RGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
            G+   ++      F +   ++          G        +AK +V  + GK  + S  
Sbjct: 512 AGIPEEDIPFLFDRFYKADKARTRGKKGGTGLGL------AIAKNIVQGHDGKIAVSSIV 565

Query: 799 AKGTLIEIIFP 809
            +GT   +  P
Sbjct: 566 GEGTTFSVYLP 576


>gi|301055130|ref|YP_003793341.1| PAS/PAC sensor signal transduction histidinekinase [Bacillus
           anthracis CI]
 gi|300377299|gb|ADK06203.1| PAS/PAC sensor signal transduction histidinekinase [Bacillus cereus
           biovar anthracis str. CI]
          Length = 510

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 97/529 (18%), Positives = 197/529 (37%), Gaps = 39/529 (7%)

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTK 353
           +S +   + +                +     +  P     +   G + + NPS   +  
Sbjct: 7   SSTQKKRHPNISRRLRNHIQDRSLTEMYASLFEHNPDSIISLNLEGVILHINPSAERILG 66

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
           Y S++ +E     S L       + +  + V+    +         + +I       L +
Sbjct: 67  YTSLE-LEQKNITSIL-------EAHISEQVLQNIKNTEVDNQQEYILSICHKNGFLLDV 118

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
                    Q         ++P +   RI +  ++    +L +++ +    +   + EG 
Sbjct: 119 VTKLVPIFVQNRLTGVYAIMKPLEKSERI-ENMLKESEKRLRTLVNSMPAFVIFKDHEGR 177

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN----HYLTEILSLDLRQTLEKIT 529
            L  N      F +       K  +  ++ N            + E+     RQ L    
Sbjct: 178 WLEANDYALSCFNFHHVPYRGKKDSELIQYNEAYREAFLHCEEVDELAWQ-QRQILHGEE 236

Query: 530 LGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
               +++  L L +    L           +   D++E K+ +  L  ++K+A       
Sbjct: 237 FIIHRDDFDLILSMSKVPLYHPDGSRKGLIVMGRDVTELKETEKLLRKSEKLAVV----- 291

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
               A ++HEIR PLT++ GF  ++      P  N     Y + +    + +  I +  +
Sbjct: 292 GQLTAGIAHEIRNPLTSLKGFLTLLL-----PEINEEQKWYIDVMLSEISQMESITSQFM 346

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
            +SK +     L  +  ++   + E ++ +   A    + I     + +  I  D   +K
Sbjct: 347 AMSKPQ----VLAIQTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYVYDIQCDGNQLK 402

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           Q+ +NIL NAI   P+GG I I T        ++R+ D G G+    + +  +PF     
Sbjct: 403 QVFINILKNAIEAMPNGGNIFIQTKPLEGNFTLIRIIDEGCGIPEDRISRLGEPFY---- 458

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
              ++ +GTGLGL +   +++ + GK +I S   KGT+++I  PL  + 
Sbjct: 459 --SLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTIVDIQLPLSSSH 505


>gi|255020961|ref|ZP_05293017.1| Phosphate regulon sensor protein PhoR [Acidithiobacillus caldus
           ATCC 51756]
 gi|254969752|gb|EET27258.1| Phosphate regulon sensor protein PhoR [Acidithiobacillus caldus
           ATCC 51756]
          Length = 451

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 86/376 (22%), Positives = 166/376 (44%), Gaps = 31/376 (8%)

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
                I +R++  +++QL   L+A  D + +++ +G +L  N A  +L G    D L KP
Sbjct: 85  RRHQEITQRQLSAQIVQLRDALQAMPDAVILMDEDGRLLWVNPAAVQLLGLHWPDDLGKP 144

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556
           F  +L       M  +L+   S  ++  + +       E     L          +   +
Sbjct: 145 FAYWLR---LPQMRQFLSGEASTAIQMPMPRDPE-RIVEGLRYPL--------GDAGALV 192

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
              DI+  +Q +                + DF+A VSHE+R+PLT I GF E + +   G
Sbjct: 193 LFRDITRLRQLEQV--------------RQDFVANVSHELRSPLTVIRGFLENLLDGPLG 238

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF-EPVSLDEAVSEAISLV 675
              +         ++     +  +V DLL ++++ES + +    + +   E +  +++ +
Sbjct: 239 R--DAEVGPQLRLMEAQSQRMQSLVEDLLSLARMESTEPDPQRLQELLPAELLHRSLNSL 296

Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
                EK + +      ++  ILA+   V+ I  N++ NA+ ++ +GG I I+ +  +  
Sbjct: 297 APRIQEKALRLALEVDEDL-AILAEPLDVQSIVHNLVDNAVKYSAAGGLIRIAWS-ETAT 354

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
           E+   V D G G+    L +  + F ++   +  R  GTGLGL + +  V+   G+  I 
Sbjct: 355 ELCFTVEDQGDGIAPEHLRRITERFYRVDRGRSRRVGGTGLGLAIVRHAVERYRGRLEIH 414

Query: 796 STPAKGTLIEIIFPLY 811
           S   +G++  + FPL 
Sbjct: 415 SEVGRGSVFRVHFPLA 430



 Score = 40.4 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/218 (8%), Positives = 49/218 (22%), Gaps = 13/218 (5%)

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
                 L          +         + +       +   +     +       +    
Sbjct: 37  SAFVSALWVGWHRQQALRFRA-WFREKRTSMPPLSAGIWEETFAEGYHWRRHQEITQRQL 95

Query: 315 FDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
             +      + +   P    +    G L + NP+ + L      DD+         L   
Sbjct: 96  SAQIVQ-LRDALQAMPDAVILMDEDGRLLWVNPAAVQLLGLHWPDDLGKPFAYWLRLPQM 154

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
                                     +  +++   ++ A+         +  E + Q+ +
Sbjct: 155 ---RQFLSGEASTAIQMPMPRDPERIVEGLRYPLGDAGALVLFRDITRLRQLEQVRQDFV 211

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471
                       ++   +  +   LE   DG    + E
Sbjct: 212 AN-------VSHELRSPLTVIRGFLENLLDGPLGRDAE 242


>gi|205353388|ref|YP_002227189.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|205273169|emb|CAR38130.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
          Length = 915

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 98/426 (23%), Positives = 172/426 (40%), Gaps = 35/426 (8%)

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
           +     L  I+      L +  I                 E        +  +   E  Q
Sbjct: 270 VPVDLVLERIR-----ILILNAILLNVLVGAGLFTLARMYERRIFIPAESDAQRLEEHEQ 324

Query: 454 L-CSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
               I+ +   GI I+   +G+ + +N            +  ++                
Sbjct: 325 FNRKIVASAPVGICILRTIDGVNILSNELAHTYLNMLTHEDRQR---------------- 368

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571
            LT+I+       ++      T     L +  +  +    +     + D+S   + +  L
Sbjct: 369 -LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSTRVKMEESL 423

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
               + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R       ++
Sbjct: 424 QEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR---LVTAMN 479

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
            S +L+L I++D+LD SKIES ++ +     S  E ++   +        K++ +     
Sbjct: 480 NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNYITANYLPLVVRKQLGLYCFIE 539

Query: 692 NNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
            ++P  +  D   ++Q+  N+LSNAI FT  G  I++       + + +RVRDTGVG+  
Sbjct: 540 PDVPVSLNGDPMRLQQVISNLLSNAIKFTDIG-CIVLHVRC-DGDYLSIRVRDTGVGIPA 597

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+   +  PL
Sbjct: 598 KEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTLRIPL 657

Query: 811 YDTSHP 816
           Y   +P
Sbjct: 658 YGAQYP 663


>gi|157156979|ref|YP_001461579.1| phosphate regulon sensor protein [Escherichia coli E24377A]
 gi|157159918|ref|YP_001457236.1| phosphate regulon sensor protein [Escherichia coli HS]
 gi|193065208|ref|ZP_03046281.1| phosphate regulon sensor protein PhoR [Escherichia coli E22]
 gi|194428791|ref|ZP_03061326.1| phosphate regulon sensor protein PhoR [Escherichia coli B171]
 gi|209917611|ref|YP_002291695.1| phosphate regulon sensor protein [Escherichia coli SE11]
 gi|218552962|ref|YP_002385875.1| phosphate regulon sensor protein [Escherichia coli IAI1]
 gi|300818278|ref|ZP_07098489.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 107-1]
 gi|300820363|ref|ZP_07100515.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 119-7]
 gi|300924117|ref|ZP_07140110.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 182-1]
 gi|301330742|ref|ZP_07223343.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 78-1]
 gi|331666747|ref|ZP_08367621.1| phosphate regulon sensor kinase PhoR [Escherichia coli TA271]
 gi|331676065|ref|ZP_08376777.1| phosphate regulon sensor kinase PhoR [Escherichia coli H591]
 gi|157065598|gb|ABV04853.1| phosphate regulon sensor protein PhoR [Escherichia coli HS]
 gi|157079009|gb|ABV18717.1| phosphate regulon sensor protein PhoR [Escherichia coli E24377A]
 gi|192927182|gb|EDV81803.1| phosphate regulon sensor protein PhoR [Escherichia coli E22]
 gi|194413094|gb|EDX29381.1| phosphate regulon sensor protein PhoR [Escherichia coli B171]
 gi|209910870|dbj|BAG75944.1| two-component sensor kinase [Escherichia coli SE11]
 gi|218359730|emb|CAQ97271.1| sensory histidine kinase in two-component regulatory system with
           PhoB [Escherichia coli IAI1]
 gi|300419670|gb|EFK02981.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 182-1]
 gi|300527148|gb|EFK48217.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 119-7]
 gi|300529169|gb|EFK50231.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 107-1]
 gi|300843314|gb|EFK71074.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 78-1]
 gi|320201641|gb|EFW76217.1| phosphate regulon sensor protein [Escherichia coli EC4100B]
 gi|323160494|gb|EFZ46442.1| phosphate regulon sensor kinase PhoR [Escherichia coli E128010]
 gi|323184775|gb|EFZ70146.1| phosphate regulon sensor kinase PhoR [Escherichia coli 1357]
 gi|323945299|gb|EGB41355.1| phosphate regulon sensor kinase PhoR [Escherichia coli H120]
 gi|324016660|gb|EGB85879.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 117-3]
 gi|331065971|gb|EGI37855.1| phosphate regulon sensor kinase PhoR [Escherichia coli TA271]
 gi|331076123|gb|EGI47405.1| phosphate regulon sensor kinase PhoR [Escherichia coli H591]
          Length = 431

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 73/427 (17%), Positives = 151/427 (35%), Gaps = 37/427 (8%)

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             +L       I     L  + W     L +         +        G+    +  + 
Sbjct: 33  WFLLASVTGLLIWHFWNLLRLSW----WLWVDRSMTPPPGRGSWEPLLYGLHQMQLRNKK 88

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            +R++   + +  S  E+  D + +   EG I   N    ++ G    +   +     L 
Sbjct: 89  RRRELGNLIKRFRSGAESLPDAVVLTTEEGGIFWCNGLAQQILGLRWPEDNGQNILNLLR 148

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
               +               +   +         + L +R++           +   D++
Sbjct: 149 YPEFTQYL----------KTRDFSRPLNLVLNTGRHLEIRVMPYTHKQ---LLMVARDVT 195

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  Q +                + +F A VSHE+RTPLT + G+ E++  Q        +
Sbjct: 196 QMHQLEG--------------ARRNFFANVSHELRTPLTVLQGYLEMMDEQPLEGAVREK 241

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                + +      +  +V  LL +SKIE+   +L  E V +   +       Q  + +K
Sbjct: 242 A---LHTMREQTQRMEGLVKQLLTLSKIEAAPTHLLNEKVDVPMMLRVVEREAQTLSQKK 298

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           +        N + ++  +   ++    N++ NA++ TP G  I +      +      V 
Sbjct: 299 Q-TFTFEIDNGL-KVSGNEDQLRSAISNLVYNAVNHTPEGTHITVRWQRVPHG-AEFSVE 355

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G G+    + +  + F ++  ++  +  G+GLGL + K  V+ +  +  I ST  KGT
Sbjct: 356 DNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHAVNHHESRLNIESTVGKGT 415

Query: 803 LIEIIFP 809
               + P
Sbjct: 416 RFSFVIP 422


>gi|187730927|ref|YP_001879108.1| phosphate regulon sensor protein [Shigella boydii CDC 3083-94]
 gi|187427919|gb|ACD07193.1| phosphate regulon sensor protein PhoR [Shigella boydii CDC 3083-94]
          Length = 431

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 73/427 (17%), Positives = 150/427 (35%), Gaps = 37/427 (8%)

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             +L       I     L  + W     L +         +        G+    +  + 
Sbjct: 33  WFLLASVTGLLIWHFWNLLRLSW----WLWVDRSMTPPPGRGSWEPLLYGLHQMQLRNKK 88

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            +R++   + +  S  E+  D + +   EG I   N    ++ G    +   +     L 
Sbjct: 89  RRRELGNLIKRFRSGAESLPDAVVLTTEEGGIFWCNGLAQQILGLRWPEDNGQNILNLLR 148

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
               +               +   +         + L +R++           +   D++
Sbjct: 149 YPEFTQYL----------KTRDFSRPLNLVLNTGRHLEIRVMPYTHKQ---LLMVARDVT 195

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  Q +                + +F A VSHE+RTPLT + G+ E++  Q        +
Sbjct: 196 QMHQLEG--------------ARRNFFANVSHELRTPLTVLQGYLEMMDEQPLEGAVREK 241

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                + +      +  +V  LL +SKIE+    L  E V +   +       Q  + +K
Sbjct: 242 A---LHTMREQTQRMEGLVKQLLTLSKIEAAPTQLLNEKVDVPMMLRVVEREAQTLSQKK 298

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           +        N + ++  +   ++    N++ NA++ TP G  I +      +      V 
Sbjct: 299 Q-TFTFEIDNGL-KVSGNEDQLRSAISNLVYNAVNHTPEGTHITVRWQRVPHG-AEFSVE 355

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G G+    + +  + F ++  ++  +  G+GLGL + K  V+ +  +  I ST  KGT
Sbjct: 356 DNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHAVNHHESRLNIESTVGKGT 415

Query: 803 LIEIIFP 809
               + P
Sbjct: 416 RFSFVIP 422


>gi|288561576|ref|YP_003428982.1| two component system histidine kinase [Bacillus pseudofirmus OF4]
 gi|288548208|gb|ADC52090.1| two component system histidine kinase [Bacillus pseudofirmus OF4]
          Length = 464

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 67/235 (28%), Positives = 122/235 (51%), Gaps = 7/235 (2%)

Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
            ++ +  + +F A +SHE+RTP+T + G+S+V++  R+         +Y   ID     +
Sbjct: 230 LQRVNEQRREFFANISHELRTPMTYLKGYSKVLREGRW--KTEEERNQYLEIIDHEATRL 287

Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF---ANNI 694
             +V+DL D++++E G+ NL  + V+++E +   +      A E+ + I         + 
Sbjct: 288 TYLVDDLFDLAQMEEGRFNLEHKKVNINEIIKLVVKKTAYKALEQNLKIEYRGGLSDKDD 347

Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELE 754
             +L D   ++Q+ +N++ NAI +T  G  I I T       + ++VRDTG+GM   EL 
Sbjct: 348 SIVLGDPLRLEQVLINLVENAIKYTKEGS-ITIYTVSNDEN-IKIKVRDTGIGMEEEELP 405

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
              + F ++  S+     GTGLGL + K +++ + G   + ST  +GT   II P
Sbjct: 406 YIFERFYRVEKSRSRAFGGTGLGLSIVKQLIELHNGTIEVESTVGEGTEFTIILP 460


>gi|57238945|ref|YP_180081.1| putative sensor protein [Ehrlichia ruminantium str. Welgevonden]
 gi|58578878|ref|YP_197090.1| putative sensor protein [Ehrlichia ruminantium str. Welgevonden]
 gi|57161024|emb|CAH57930.1| putative histidine kinase sensor component of a two-component
           regulatory system [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58417504|emb|CAI26708.1| Putative sensor protein [Ehrlichia ruminantium str. Welgevonden]
          Length = 477

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 98/252 (38%), Positives = 154/252 (61%), Gaps = 1/252 (0%)

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
             +S+      KL  AK++AE+E+  KS FLA VSHE+RTPL +IIGFSE+IK++  GP+
Sbjct: 216 RMLSKQYDVNLKLKEAKEMAEQENISKSQFLANVSHELRTPLNSIIGFSEMIKSESLGPI 275

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
            N  Y EY N I  SG  +L ++ND+LD SK E+ K+ + F    L + VS   +++   
Sbjct: 276 ENSDYKEYINDIHSSGVHLLSLINDILDFSKAEANKLVIEFIKFDLGKIVSSCFNMMIPR 335

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-SNEEV 737
           A + ++ +     ++   ++AD + +KQ+ +N+LSN+I FTP  G + +   +   ++ +
Sbjct: 336 AEQAKVHLEKVLPSDKVVMVADPKRIKQVIINLLSNSIKFTPENGTVKLVVRYNLEDKLI 395

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
           I+ + DTG+G+   +L K M  FGQ+ +    + EGTGLGLPL+K +V+   G F I S 
Sbjct: 396 IIEITDTGIGIAQQDLYKVMSVFGQVDSKHSRKYEGTGLGLPLSKKLVELMNGIFKIKSE 455

Query: 798 PAKGTLIEIIFP 809
           P  GT+I + FP
Sbjct: 456 PNSGTVITLTFP 467


>gi|223983989|ref|ZP_03634147.1| hypothetical protein HOLDEFILI_01437 [Holdemania filiformis DSM
           12042]
 gi|223964065|gb|EEF68419.1| hypothetical protein HOLDEFILI_01437 [Holdemania filiformis DSM
           12042]
          Length = 853

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 129/737 (17%), Positives = 255/737 (34%), Gaps = 85/737 (11%)

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNR-----------EFSGFRGFGIVHVNRVDNDP 193
           G+    P +      P D  AL     +              +G   F +V      +D 
Sbjct: 105 GEQVCLPSD-----QPCDQQALAQLDPHGGDQAVIDPHISSVTGMDVFDLVLEVDFSDDQ 159

Query: 194 ------RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247
                     + +   F+       G S V     D+  +   P   +    +  +    
Sbjct: 160 KGYLIKEFEVRSIVDTFTLSFYNDAGFSYVVDADGDVLIRSPHPRSNKTVQNLLDMLSSQ 219

Query: 248 AHKDDVLKTEKYPLLTSEESSL--------------PEQEDFHTINLNQYTKKQYFGTLQ 293
           ++    L      L ++E                  P         ++   +        
Sbjct: 220 SNDSQALALFADSLKSAETGWAIFTYEGERTVFCFTPVGLHSDWALISIIPEAAVNAQTH 279

Query: 294 NNSKESFEYLSHRN-------------HPSLSAYFDEGENLTPETVDKCPIPFFVYSHG- 339
              ++S   ++                            N      +  P    + S   
Sbjct: 280 ALLRQSLALVASAVLGISALVLLYLRHMTKTQRRLTHQTNYISHLYNALPEAVALISTTQ 339

Query: 340 --NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397
              L   N     L  Y  +++ +    L      PKL   +    +         I   
Sbjct: 340 PYRLLQLNREGWRLMGYT-LENSDEVLNLDLRASMPKLDYEHFAGQIEAAICSGEKINL- 397

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
             +  ++    +    + I  +  ++  E +          + +  + + +  + +  ++
Sbjct: 398 --VEMMKNRDGSVFWTSGIIEKTLDENGEPVLIYAFHDITKEKQAEEAEKQRTLQERLTL 455

Query: 458 LEATSDG---IAIIN---REGIILSTNRAVSKLFGYPVED-----ILRKPFTVFLEQNTP 506
           + A S+    I  +N    +   +     +    G           L     +   Q+  
Sbjct: 456 VSALSNAYPVIISLNLTQDQVQFVYVRPGLMIRLGEQETYSQLYAELEASIDLEFRQDYR 515

Query: 507 SVMNHYLTEILSLDLRQT-LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM---HDIS 562
               + L E  +  + +  LE     + ++    + +II    P+S      +       
Sbjct: 516 QFQLNALQEAFAGGIGEVVLEMKMKLTDEQLHWTTTQIIHVNNPYSEDQLAILISRRTDE 575

Query: 563 EWKQEKNK---LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           +  + + +   L  A + A   S+ KS FL+ +SH+IRTP+ AI+G + +       P  
Sbjct: 576 QRLKAERQQEILKTALENATAASAAKSQFLSNMSHDIRTPMNAIVGMTAIAGAHLNDP-- 633

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
             R       I  S   +L ++ND+LD+SKIESGK+ +  EP +  E ++E + LV+  A
Sbjct: 634 -ERVQACLRKISLSSKHLLSLINDILDMSKIESGKLTIAQEPFNFAELITEVVELVRPQA 692

Query: 680 NEKRILIRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN--- 734
            EK  +        + +  ++ D   ++Q+ +NILSNA+ +TP GG I +  +  S+   
Sbjct: 693 EEKNQIFEFQ-PERLEKEGVVGDPLRIRQVCINILSNAVKYTPEGGTITLEISQRSSLYK 751

Query: 735 --EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
             +  + R  DTG+GM    + +  +PF +  + Q     GTGLG+ + K +VD   G+ 
Sbjct: 752 GCQNFVFRCADTGIGMEPEFMTRLFQPFERSDHPQARNENGTGLGMAITKNLVDLMNGEI 811

Query: 793 YIFSTPAKGTLIEIIFP 809
            + ST  +G++  +I P
Sbjct: 812 QVTSTAGQGSVFTVILP 828


>gi|303247947|ref|ZP_07334214.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
 gi|302490671|gb|EFL50574.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
          Length = 838

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 115/650 (17%), Positives = 228/650 (35%), Gaps = 32/650 (4%)

Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE 245
             R  +   A    +    + L   +      +        + + PP     +++     
Sbjct: 43  ELREVHKDLARLSLVLAGQTGLAFQEIDFVLTDTRTLLTPERLASPPTDEALHRLLHDRF 102

Query: 246 YYAHKDDVLKTEKYPLLTSEE-SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
               +   L                P              +K         S      ++
Sbjct: 103 RGLLQGQALLLFGADGTMLAHSRVFPTPPVHVGDRDYFRAQKHATTDALFISAPLRNRVN 162

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364
           H    SLS      +      +       +     +     PS  +  +      +    
Sbjct: 163 HNWMISLSRRLTTPDGGFAGVLMAAVEMRYFTRLYHALELPPSARIALQRADGTLLATYP 222

Query: 365 GLSTLLDAPKLS-DNNAIKPVMLYRSDRTCIAASARL---HTIQWNRENSLAMTFIPFEK 420
              TLL   +    + + +           ++    L     ++     +  +       
Sbjct: 223 FDDTLLGRVEPPCRDGSGRISAGSPVPGLPMSVCLSLPLSTVLRRWHGLAWMIGLGTLAA 282

Query: 421 ANQFPENMPQNGIE--PEDVDTRINKRKMEI----EVMQLC-------SILEATSDGIAI 467
                       I    + +  +  +R++E         L        +ILE +  GI +
Sbjct: 283 VVGIGVLTGALAIRVRRDRLAAKRQQRRLEELVALRTADLQQLLAFNETILETSPVGIGV 342

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
            +++G  +S N +  ++ G   E +    F          +++H +  + +        +
Sbjct: 343 YHQDGQCISVNDSFCRIIGGDKEALQSLNFRHLDSWREAGMLDHAVATLETGAPSHLECR 402

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
                 K+   + +     +          L + DI+E KQ +  L +AK++AE  +  K
Sbjct: 403 TVTSFHKD---IWIECHFVRFVRDGIDHLLLLLADITERKQVEAALRNAKRVAETANVAK 459

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
           S+FLA +SHEIRTPL  ++G  ++++        +    EY      S   +  +++D+L
Sbjct: 460 SEFLANMSHEIRTPLNGVLGMLQLMRTTSL----DAEQREYLAAAILSTQRLTGLLSDIL 515

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSV 704
           D+S+IE+GK+ L      + +  +  + +  L A  K + +  S    +P R+  D   +
Sbjct: 516 DLSRIEAGKLTLQEADFKVADLKASILEVFSLVARNKGLRLEFSTDAAMPARLAGDETRI 575

Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPF 760
           +QI  N++ NA+ FT +GG  + +       +    V+  VRDTGVG+ +  L   ++PF
Sbjct: 576 RQILFNLVGNALKFTTTGGVDVAAFALPPRADGRLPVVFSVRDTGVGIPDARLADIVEPF 635

Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            Q   +     EG GLGL + + +V    G+  I +    GT I    PL
Sbjct: 636 VQGLGAPYAPREGAGLGLSIVRRLVRMMGGELAIDNREGGGTTIYCALPL 685


>gi|168704424|ref|ZP_02736701.1| multi-sensor signal transduction histidine kinase [Gemmata
           obscuriglobus UQM 2246]
          Length = 538

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 102/546 (18%), Positives = 192/546 (35%), Gaps = 31/546 (5%)

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
                 H       ++ +            F  L   +    + YF          +++ 
Sbjct: 14  AANVTIHPTEDELVSRLRGLKAEYRERGRQFYALPPGSPERTAMYFGP-----SGLLERF 68

Query: 330 PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389
                V   G +   N   +   + ++ D    A G                   +L   
Sbjct: 69  NESKAV--AGEILRVNRENMEQARDRARDTARTAMGAFGAALGLVALLLAGAGWYLLRTI 126

Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD--TRINKRKM 447
                A +   H I     +      +P    ++         +   ++    R N  ++
Sbjct: 127 LGPIRAVTEAAHAI---GGSGQLERTVPVFGRDELGRLAAAFNVMTRELRKYRRSNLDRL 183

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
                   + +++  D + +++  G     N A   LFG                +    
Sbjct: 184 VRAQRTAQATIDSFPDPVLVVDPAGRADLANPAARALFGVGPTAQGDPGPVWSPPEPLGG 243

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWK 565
            +   L    +    Q  + ++     E++     +   + P       ++ +HD++ ++
Sbjct: 244 PVADALQLQRAYQPDQFDQTVSFRLGGEDRTYLPHVRPIRDPDGDTLGAAVVLHDVTRFR 303

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
                              KSD +A VSHE++TPLT++     ++  +  GPL   +  E
Sbjct: 304 LL--------------DQFKSDLVATVSHELKTPLTSVRLAVHILLEETVGPLTT-KQTE 348

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
                  S   +L ++  LL +++++       F P    E +  A    +  A++K I 
Sbjct: 349 LLIDARDSAERLLALIEQLLALARLQKPHDEGTFHPADPAELLRTAADAARARADDKHIT 408

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +  +    +P ++ D     Q   N+L+NAI +TP GG + ++   T++  V+L V DTG
Sbjct: 409 LAVNTNAVVPAVVVDSDRFGQALGNLLNNAITYTPPGGTVALAAGMTTDGAVVLSVADTG 468

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           VG+    L      F +IP   Q    GTGLGL + K +V A+ G     S P KGT   
Sbjct: 469 VGIPAEHLAHVFDRFFRIPG--QSEEGGTGLGLAIVKEVVVAHRGTVTCESEPGKGTTFR 526

Query: 806 IIFPLY 811
           II P +
Sbjct: 527 IILPAH 532



 Score = 44.6 bits (104), Expect = 0.069,   Method: Composition-based stats.
 Identities = 32/300 (10%), Positives = 60/300 (20%), Gaps = 27/300 (9%)

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
            G    +   G   Y      ALP  S  R    F   G++            G+ L   
Sbjct: 31  RGLKAEYRERGRQFY------ALPPGSPERTAMYFGPSGLLERFNESKA--VAGEILRVN 82

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
             ++ + +       +     F        L +      L          +    + +  
Sbjct: 83  RENMEQARDRARDTARTAMGAFGAALGLVALLLAGAGWYLLRTILGPIRAVTEAAHAIGG 142

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
           S +                              + S                   +    
Sbjct: 143 SGQLERTVPVFGRDELGRLAAAFNVMTRELRKYRRSN-----------LDRLVRAQRTAQ 191

Query: 324 ETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
            T+D  P P  V    G    ANP+   L            G    +   P+        
Sbjct: 192 ATIDSFPDPVLVVDPAGRADLANPAARALFGVGPTAQ----GDPGPVWSPPEPLGGPVAD 247

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
            + L R+                                +   + +    +  +    R+
Sbjct: 248 ALQLQRA---YQPDQFDQTVSFRLGGEDRTYLPHVRPIRDPDGDTLGAAVVLHDVTRFRL 304


>gi|302340478|ref|YP_003805684.1| PAS/PAC sensor hybrid histidine kinase [Spirochaeta smaragdinae DSM
           11293]
 gi|301637663|gb|ADK83090.1| PAS/PAC sensor hybrid histidine kinase [Spirochaeta smaragdinae DSM
           11293]
          Length = 813

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 90/518 (17%), Positives = 189/518 (36%), Gaps = 30/518 (5%)

Query: 319 ENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSV--DDIEIAGGLSTLLDAPKL 375
             +     D  P   +    +    + N +            + I        L +    
Sbjct: 27  ARMLRLMCDNVPDLLWAKDLNNRFLFVNQAMCDKLLCARDTNEPIGKTDMFFALRERKNH 86

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWN-----RENSLAMTFIPFEKANQFPENMPQ 430
            + +          D + +         +++     R   L +        ++  E +  
Sbjct: 87  PEQSDWHTFGEICRD-SDLVVRQTAQAGRFDEFGNVRGEFLFLDVYKAPFRDEAGEIIGT 145

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490
            G      D R     ++    +   I+E  +  I  ++  G IL  N     LFGY ++
Sbjct: 146 VGCGRVVTDERRMVEALQEREEEYHRIVEQAASIIVKVDLSGQILFMNHFGLDLFGYTMD 205

Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
           ++  K     +   +    + +  ++          + ++    E   +S          
Sbjct: 206 ELYHKNAVGTIV--SDKKSDDFFRKVPDQCCDGKTIEESVTRLGEHLYISWSNRPLYDTE 263

Query: 551 SS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                +    +D++++K  + +L   ++ A      K  FL  V+HE+RTPL+ ++G  +
Sbjct: 264 GRCYGFLSIGNDVTDYKVRELELLEVRQKAASAELQKGVFLGTVTHELRTPLSGMLGVVD 323

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL-DEA 667
            + +    P  +       + +  +   +L +V+DL+ ++ +     ++      L  + 
Sbjct: 324 ALLSSGRAPGVHEE----LSLLRDAAQTLLALVDDLVGVTNMNGFFPDIKASAFHLGKDL 379

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQII 726
           V     L++  A  K + +    A  +P +L  D   ++QI  N++ NA+ +T  G +++
Sbjct: 380 VGPVRRLMEPLARAKGLKLEVRVAPGVPTLLLGDTLRLRQIFYNLIGNAVKYTDQG-RVL 438

Query: 727 ISTTHTS-------NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
            S    +        + ++  V DTG G+ +         F +  +  Q R EG+GLGL 
Sbjct: 439 FSVEQDTPLFPEKGRQALVFSVSDTGNGIPDDVQGTLFDFFTRSSSPDQQRREGSGLGLA 498

Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
           + K +VDA  GK  + S P  G +  I     D  HP 
Sbjct: 499 VVKRIVDAMGGKIEVHSDPESGAIFSIHL---DLIHPE 533



 Score = 41.9 bits (97), Expect = 0.41,   Method: Composition-based stats.
 Identities = 15/162 (9%), Positives = 36/162 (22%), Gaps = 26/162 (16%)

Query: 85  FTWNIDAHGYLKEISEELPK--TIGNYAFKMIGMR-----LCD--------VSDILH--- 126
             W  D +     +++ +           + IG       L +                 
Sbjct: 40  LLWAKDLNNRFLFVNQAMCDKLLCARDTNEPIGKTDMFFALRERKNHPEQSDWHTFGEIC 99

Query: 127 IDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHV 186
            D +  +    +                   ++ +D+   P      E  G  G G   V
Sbjct: 100 RDSDLVVRQTAQAGRFDEFGNV------RGEFLFLDVYKAPFRDEAGEIIGTVGCG--RV 151

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228
              +       +  ++++  + E              I    
Sbjct: 152 VTDERRMVEALQEREEEYHRIVEQAASIIVKVDLSGQILFMN 193


>gi|215919045|ref|NP_819809.2| two component system histidine kinase [Coxiella burnetii RSA 493]
 gi|206583930|gb|AAO90323.2| two component system histidine kinase [Coxiella burnetii RSA 493]
          Length = 831

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 91/511 (17%), Positives = 193/511 (37%), Gaps = 40/511 (7%)

Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
            F+   G +  AN   + L + K               D    +   A K  +    ++ 
Sbjct: 48  LFISDEGFIEAANDFAIKLLQLKP----------DQFPDVDFHAFCRANKYSLSRFFNKV 97

Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
                A   T        + +       +           +  +    ++   +++ ++ 
Sbjct: 98  EPPTEALEETYLLKGRQYVILW-KIIRFSQFDDMLKGSLLVGHDRTQLQLVSGELKSKIF 156

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL--RKPFTVFLEQNTPSVMN 510
              +IL      +   ++  + L  N  ++++ G P    +     F     +       
Sbjct: 157 FYENILSKLPTNVYWKDKNSVYLGCNERLARVMGLPSRKAIEGMTDFDFVWGKEAAKSFI 216

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQ 566
            +  +++   +    E   +       ++++      L               DI+E K+
Sbjct: 217 EFDQKVMRSGIPLMTED--VFKEASGNIVTVLTNKTPLKNEHGETIGVLAISVDITELKK 274

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN--QRFGPLGNPRYI 624
            + +L   ++ AE  +  KS+F+A +SH+IRTP+  ++G  + + N  +      N   +
Sbjct: 275 TQAQLEIQRQKAEAANKAKSEFIANMSHDIRTPIAGMLGMLQDLLNVAEETKTSSNASIL 334

Query: 625 EYANYIDR-------SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
                + R       + + +L + N++L++ ++ESGK +   E   L E +   I L+Q 
Sbjct: 335 NVIETVQRDSELLMGATDELLQLCNEILEVIRLESGKESEQSEAFDLRELIKRTIELLQP 394

Query: 678 YANEKRILIRTSFANNIPRILADLRS--VKQIALNILSNAIHFTPSG-GQIIIST----- 729
            A++K++ +       IP+   D     + +  LN++SNA+ FT +G  ++ +       
Sbjct: 395 VAHQKKLTLACEVDEGIPQ-YLDGIRMYLSRTLLNLISNALKFTENGFVKVKVRLSDKTN 453

Query: 730 ---THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
                     + + V DTG+G+   + +   + F ++  S +   +G GLGL   K  VD
Sbjct: 454 SHYRVGDKATIQIAVEDTGMGIPRDKFDTIFEHFSRLTPSYEGLYKGAGLGLYTVKRYVD 513

Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
           A  G+  + S   KGT   +I P     H  
Sbjct: 514 AMGGEITVDSEVGKGTCFTVIIPFTVADHAE 544



 Score = 40.0 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 28/260 (10%), Positives = 72/260 (27%), Gaps = 17/260 (6%)

Query: 81  RTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI----GDL 136
                 W  D +      +E L + +G  + K I   + D   +   +           +
Sbjct: 165 LPTNVYWK-DKNSVYLGCNERLARVMGLPSRKAI-EGMTDFDFVWGKEAAKSFIEFDQKV 222

Query: 137 LKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRAL 196
           ++       +       G    V +     P+ + + E  G     +          +A 
Sbjct: 223 MRSGIPLMTEDVFKEASGNI--VTVLTNKTPLKNEHGETIGVLAISV--DITELKKTQAQ 278

Query: 197 GKRLDKKFSHLHEIKKGHSSVEKEKYDI----FSQQSPPPHLRMKNKVSSLTEYYAHKDD 252
            +   +K    ++ K    +                        +   +S      +  +
Sbjct: 279 LEIQRQKAEAANKAKSEFIANMSHDIRTPIAGMLGMLQDLLNVAEETKTSSNASILNVIE 338

Query: 253 VLKTEKYPLLTSEESSLP---EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
            ++ +   L+ + +  L    E  +   +   + +++     L+   K + E L    H 
Sbjct: 339 TVQRDSELLMGATDELLQLCNEILEVIRLESGKESEQSEAFDLRELIKRTIELLQPVAHQ 398

Query: 310 SLSAYFDEGENLTPETVDKC 329
                  E +   P+ +D  
Sbjct: 399 KKLTLACEVDEGIPQYLDGI 418


>gi|311278813|ref|YP_003941044.1| histidine kinase [Enterobacter cloacae SCF1]
 gi|308748008|gb|ADO47760.1| histidine kinase [Enterobacter cloacae SCF1]
          Length = 949

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 98/421 (23%), Positives = 172/421 (40%), Gaps = 35/421 (8%)

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
           +     L +I+      L +  +                 E           +   E  Q
Sbjct: 303 VPVDVVLESIRM-----LILNAVLLNLLTGLALFTMARMYERRIFIPAEVDAQRLEEHEQ 357

Query: 454 L-CSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
               I+ +   GI I+   +G  + +N            +  ++                
Sbjct: 358 FNRKIVASAPVGICILRTLDGTNILSNELAHNYLNMLTHEDRQR---------------- 401

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571
            LT+I+       ++      T     L +  +  +    +     + D+S   + +  L
Sbjct: 402 -LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSSRVKMEESL 456

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
               + AE+ S  KS FLA VSHE+RTPL  IIG  + + + +  P G  R +   +   
Sbjct: 457 QEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLHTKELPKGVDRLVTAMS--- 512

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
            S +L+L I++D+LD SKIES ++ +     S  E +S   +        K++ +     
Sbjct: 513 NSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMSHITANYLPLVVRKQLGLYCFID 572

Query: 692 NNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
            ++P  ++ D   ++Q+  N+LSNAI FT  G  II+      ++ + + VRDTGVG+  
Sbjct: 573 PDVPPQMVGDPMRLQQVISNLLSNAIKFTDMG-CIILHLR-QDSDYLSISVRDTGVGIPA 630

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            E+ +   PF Q+    Q   +GTGLGL + + +++   G   + S P  G+   I  PL
Sbjct: 631 KEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLINMMDGDIAVDSEPGMGSQFTIRIPL 690

Query: 811 Y 811
           Y
Sbjct: 691 Y 691


>gi|71907253|ref|YP_284840.1| PAS [Dechloromonas aromatica RCB]
 gi|71846874|gb|AAZ46370.1| PAS protein [Dechloromonas aromatica RCB]
          Length = 802

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 88/399 (22%), Positives = 164/399 (41%), Gaps = 39/399 (9%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVED---ILRKP 496
           R  +  +  +  +L +IL+ T+ G    N + G ++  N   + + GY + +   +  + 
Sbjct: 264 RAPQHALSRQAQRLSAILDGTNVGTWEWNIQNGKVI-INERWANIIGYDLAEMQPVNFQT 322

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR-----IIIKKLPFS 551
           +  F+           L +  S ++    E +     K+   + +               
Sbjct: 323 WVGFVHPEDIQTSQFLLEQHFSGEIP-YYECVVRMRHKDGHWVWVLDRGRIATWAADGKP 381

Query: 552 SCYSLTMHDISEWKQEKNKLSHAKK------------------IAEKESSHKSDFLARVS 593
                T  DI+  K  + +L   +                    A+  S  KS FL+ +S
Sbjct: 382 LWMFGTHQDITAQKMAEQELLAHRDHLEELVSIRTHDLSIAKDAADAASRAKSAFLSNMS 441

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HE+RTPL  I+G   ++K    G + +         +  + + + D+VN++LD+++IE+G
Sbjct: 442 HELRTPLHGILGLGNILK----GKINDQHSRLLVAKLLTTASHMNDVVNNVLDLARIEAG 497

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713
           +  +     S      +  S+  + A  K +  + +F    PR+  D   + Q+ +NI+ 
Sbjct: 498 RFVIKNADFSTATLKEKLDSICAINAQAKGLEYKANFD-LPPRVHGDSVQILQVLINIVG 556

Query: 714 NAIHFTPSGGQIIISTTHTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
           NAI FT  G  I +S    S E     +   VRDTG+G+   +LE   + F Q       
Sbjct: 557 NAIKFTEHGS-IHVSAFVLSEESSRLRLCFEVRDTGIGIPPEKLESIFEDFEQADGGINR 615

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           +  G+GLGL + + +V    G+  + S P  G+L     
Sbjct: 616 KYGGSGLGLAITRRLVQMMEGETQVESQPGIGSLFRFEI 654



 Score = 50.8 bits (120), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 9/162 (5%), Positives = 41/162 (25%), Gaps = 6/162 (3%)

Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKS 356
                +        A   + +      +D   +  + ++  +G +   N  +  +  Y  
Sbjct: 255 YRALFAEGVRAPQHALSRQAQR-LSAILDGTNVGTWEWNIQNGKVI-INERWANIIGYDL 312

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
            +   +          P+  D    + ++              +     +      +   
Sbjct: 313 AEMQPVNFQTWVGFVHPE--DIQTSQFLLEQHFSGEIPYYECVVRMRHKDGHWVWVLDRG 370

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458
                    + +   G   +    ++ ++++      L  ++
Sbjct: 371 RIATWAADGKPLWMFGTHQDITAQKMAEQELLAHRDHLEELV 412



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/173 (13%), Positives = 48/173 (27%), Gaps = 8/173 (4%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIG---MRLCDVSDILHIDPNNHIGDLLKRQNTW 143
           WNI  +G +  I+E     IG    +M                I  +  + +        
Sbjct: 291 WNI-QNGKVI-INERWANIIGYDLAEMQPVNFQTWVGFVHPEDIQTSQFLLEQHFSGEIP 348

Query: 144 YGKTTLWPIEGTNLYVPIDLAAL-PIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
           Y +  +        +V +        ++ + +      FG                    
Sbjct: 349 YYECVVRMRHKDGHWVWVLDRGRIATWAADGKPLWM--FGTHQDITAQKMAEQELLAHRD 406

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255
               L  I+    S+ K+  D  S+        M +++ +         ++LK
Sbjct: 407 HLEELVSIRTHDLSIAKDAADAASRAKSAFLSNMSHELRTPLHGILGLGNILK 459


>gi|15597373|ref|NP_250867.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PAO1]
 gi|9948197|gb|AAG05565.1|AE004644_12 probable sensor/response regulator hybrid [Pseudomonas aeruginosa
           PAO1]
          Length = 699

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 89/571 (15%), Positives = 190/571 (33%), Gaps = 40/571 (7%)

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ--NNSKESFEYLSHRNHPSLSAYFD 316
                                  + +       LQ  ++S+     +     P +     
Sbjct: 4   AGRAGVFRKVGQVPGASQRAAGRRSSYYLAGCALQPGSSSRRVNTSMKTTRKPKVPLNQA 63

Query: 317 EGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
               L  E VD   I   + S G++   +     L  + + + +      +         
Sbjct: 64  TRNRLLDEAVDDYAIH-TLDSAGHIASWSAGAARLFGHDASEILGR--DYACFHTRKDRD 120

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
                + +    ++            ++ N +   A   I     +   + +    +  +
Sbjct: 121 AGVPQQALRQADAEGR---FETEGWRVRSNGKRFWAQVVIDAI-RDSQGQLLGFAQLIHD 176

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
             + R  K  +     Q   ++++ +D  I +++  G I + N    ++ GY  E+++ +
Sbjct: 177 LSEGRAAKEALRRSQEQFRLLVQSVTDYAIYMLDHRGRITNWNLGAQRIKGYLPEEVIGR 236

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555
            F+ F               + + +     EK      K+       ++I  +  S    
Sbjct: 237 HFSCFYTPEDREAGEPA-RGLAAAEREGRFEKEGWRVRKDGSRFWANVVIDPIRDSDGRL 295

Query: 556 L----TMHDISEWKQEKNKLSHAKKIAEKESSH--KSDFLARVSHEIRTPLTAIIGFSEV 609
           +       DI+   + + +L  A++   +             V+H+    LT IIG   +
Sbjct: 296 IGFAKVTRDITHRIEAERELERARQELFQAQKMESLGHLTGGVAHDFNNLLTVIIGSLGL 355

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           +K +  G   + R  +       +     ++   +L  ++    K  L  +P ++ + + 
Sbjct: 356 LKKRLPG---DQRTADLLQNALEAAQRGANLTQRMLSFAR----KQRLDPQPCAIPDLLR 408

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
               L+        + I T F  ++   L D   ++   +N+ +NA    P+GG+I+ S 
Sbjct: 409 GMTDLLIHSL-GPSVSIETRFPLDLDLGLTDANQLELSIINLATNARDAMPNGGRIVFSA 467

Query: 730 -----------THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
                             + L + DTG GM    L +A++PF          G GTGLGL
Sbjct: 468 SNQRVPADNPHRLAPGNYICLSISDTGSGMDEETLRRAVEPFYTTKG----IGRGTGLGL 523

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            +   + +   G+  + S P  GT   I  P
Sbjct: 524 SIVDGLAEQLGGRLTLESQPGVGTTANIWIP 554



 Score = 73.5 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/244 (10%), Positives = 74/244 (30%), Gaps = 8/244 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D+ G++   S    +  G+ A +++G            D       L +       +T 
Sbjct: 81  LDSAGHIASWSAGAARLFGHDASEILGRDYACFHTRKDRDAGVPQQALRQADAEGRFETE 140

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
            W +          +    I     +  GF    ++H        +   +R  ++F  L 
Sbjct: 141 GWRVRSNGKRFWAQVVIDAIRDSQGQLLGFAQ--LIHDLSEGRAAKEALRRSQEQFRLLV 198

Query: 209 EIKKGHSS-VEKEKYDIFSQQSPPPHLR--MKNKVSS--LTEYYAHKDDVLKTEKYPLLT 263
           +    ++  +   +  I +       ++  +  +V     + +Y  +D         L  
Sbjct: 199 QSVTDYAIYMLDHRGRITNWNLGAQRIKGYLPEEVIGRHFSCFYTPEDREAGEPARGLAA 258

Query: 264 SEESSLPEQEDFH-TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
           +E     E+E +    + +++        ++++      +       +     +      
Sbjct: 259 AEREGRFEKEGWRVRKDGSRFWANVVIDPIRDSDGRLIGFAKVTRDITHRIEAERELERA 318

Query: 323 PETV 326
            + +
Sbjct: 319 RQEL 322



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/239 (10%), Positives = 50/239 (20%), Gaps = 5/239 (2%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + +D  G +   +    +  G    ++IG            +       L   +     
Sbjct: 206 IYMLDHRGRITNWNLGAQRIKGYLPEEVIGRHFSCFYTPEDREAGEPARGLAAAEREGRF 265

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +   W +         ++   PI   +    GF       V R         + L++   
Sbjct: 266 EKEGWRVRKDGSRFWANVVIDPIRDSDGRLIGF-----AKVTRDITHRIEAERELERARQ 320

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
            L + +K  S             +    +     +         +   L           
Sbjct: 321 ELFQAQKMESLGHLTGGVAHDFNNLLTVIIGSLGLLKKRLPGDQRTADLLQNALEAAQRG 380

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
            +       F                L+  +      L            D    LT  
Sbjct: 381 ANLTQRMLSFARKQRLDPQPCAIPDLLRGMTDLLIHSLGPSVSIETRFPLDLDLGLTDA 439


>gi|257058733|ref|YP_003136621.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8802]
 gi|256588899|gb|ACU99785.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8802]
          Length = 844

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 108/572 (18%), Positives = 205/572 (35%), Gaps = 77/572 (13%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
               +  +  E+     V+        +   G + + N ++           +  +    
Sbjct: 57  EEAKSALEASESRYQAIVEDQTELICRFRQDGTVTFVNQAYCRYFNLTPEQIVGKSFL-- 114

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
                P +   N  K     +            H +           +      +   + 
Sbjct: 115 -----PLIPAENQEKVSQDLKGLTQQNPVIIHEHQVIAPTGEMGWHQWTNRGIFDDKGQV 169

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQ---LCSILEATSDGIAIINREGIILSTNRAVSKL 484
                +  +    +  + ++   + +   L  I E   +    ++ E I+  T     ++
Sbjct: 170 REIQAVGRDITQLKQIEAELRQTLEKEKTLNQIAERIRE---SLDIEDILNKTCEETRQI 226

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
                  + +       E    SV   ++  ++   +++  +   L  TK  +    +I 
Sbjct: 227 LECDRVAVYQFKPDWSGEFIAESVALGWVP-LVGETVKKVWQDTFLQRTKGGRYKYNQIF 285

Query: 545 IKKLPFSSCYSLTMHDISEWKQEKN----------------------------------- 569
             K  +++ +     D+ E  Q +                                    
Sbjct: 286 AVKDIYTAGHQQCHLDLLEQFQARAYLIIPIFVQNQLWGLLASYQNSAPRDWSPQNIKLL 345

Query: 570 ------------------KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
                             +L   K  AE  +  KS FLA +SHE+RTPL AI+GFS+++ 
Sbjct: 346 KQISIQLGLALQQGELLSQLQKTKNAAEAANRAKSQFLAHMSHELRTPLNAILGFSQLL- 404

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
                   N    EY + I+RSG  +L ++ D+LD++KIE+G++ L     +L   +   
Sbjct: 405 --NHDSTLNEEQQEYIDIINRSGEHLLALIQDILDMAKIEAGQITLQRNSFNLHRLIQTL 462

Query: 672 ISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
             +  L A +K + +      +IP  IL D   ++Q+ +N+LSNAI FT  G QII+  +
Sbjct: 463 EQMFYLKAQDKGLQLFVEIDPSIPAYILTDEGKLRQVLINLLSNAIKFTQRG-QIILRVS 521

Query: 731 HTSNEE---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
              + E   ++  V D+G G+   E  K   PF Q    ++ + EGTGLGL +++  V  
Sbjct: 522 EKPDPETPYLLFEVEDSGPGIECDEAPKLFNPFFQTELGRKTQ-EGTGLGLAISRHFVSI 580

Query: 788 NMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819
             G  ++    + GTL     P+        C
Sbjct: 581 MGGSLWVSCPLSGGTLFHFDLPVEFACSEESC 612



 Score = 45.8 bits (107), Expect = 0.033,   Method: Composition-based stats.
 Identities = 13/128 (10%), Positives = 35/128 (27%), Gaps = 3/128 (2%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151
            G +  +++   +       +++G     +    + +  +     L +QN          
Sbjct: 87  DGTVTFVNQAYCRYFNLTPEQIVGKSFLPLIPAENQEKVSQDLKGLTQQNPVIIHEHQV- 145

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
           I  T            I+    +    +  G            A  ++  +K   L++I 
Sbjct: 146 IAPTGEMGWHQWTNRGIFDDKGQVREIQAVG--RDITQLKQIEAELRQTLEKEKTLNQIA 203

Query: 212 KGHSSVEK 219
           +       
Sbjct: 204 ERIRESLD 211


>gi|160890194|ref|ZP_02071197.1| hypothetical protein BACUNI_02634 [Bacteroides uniformis ATCC 8492]
 gi|317481456|ref|ZP_07940522.1| hsp90-like protein [Bacteroides sp. 4_1_36]
 gi|156860582|gb|EDO54013.1| hypothetical protein BACUNI_02634 [Bacteroides uniformis ATCC 8492]
 gi|316902366|gb|EFV24254.1| hsp90-like protein [Bacteroides sp. 4_1_36]
          Length = 508

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 97/411 (23%), Positives = 175/411 (42%), Gaps = 26/411 (6%)

Query: 403 IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
           I+      L +                      +  +  + +R+ E     L SILE   
Sbjct: 111 IRIESGEKLYIAVRMVYLNRN-----YVIAFIRDITEDEVQRRENEKYRFFLESILENLP 165

Query: 463 DGIAIINR--EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520
               + ++  EG  L  N+  +++   P EDI+      F      + +     E+   +
Sbjct: 166 IATTVKDKNDEGRYLIWNKKAAEMMEVPAEDIVGHYEEEFNPLMQDNFIQETDKEVEESE 225

Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKL--PFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578
           + Q+  K  +     E +LS    +             +  DI+E           K+ A
Sbjct: 226 IPQSYIKHFVNPKGREYILSFHKTLVSYNKGKERWIVSSALDITELLAA-------KEKA 278

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
           E+ +  KS FLA +SHEIRTPL AI+GFS ++ +     + +    EY + I+ +  L+L
Sbjct: 279 EEANRLKSAFLANMSHEIRTPLNAIVGFSSILSDY----IQDEDTKEYIHIIEENTQLLL 334

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
            ++ND+LD+S+IE+G +      + +++ + E  ++ +L    + + IR     +   I 
Sbjct: 335 QLINDILDLSRIEAGILEFTEGDMDVNKTLDEMQTMAKLKLPSE-VSIRLLPGADYCIIH 393

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
              + V+Q+  N LSNA+  T  G  I I       + +   VRDTG G+   + +   +
Sbjct: 394 TVPKRVRQVLNNYLSNALKHTEEGF-IDIGYHLPQEDRIRFFVRDTGCGIPPEKQKDVFE 452

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            F ++ + +    +GTGLGL +   + +   GK  + S P KG+      P
Sbjct: 453 RFVKLNSFK----QGTGLGLSICTMIAEKMNGKVGVSSIPGKGSEFWFEIP 499


>gi|329116484|ref|ZP_08245201.1| PAS domain S-box protein [Streptococcus parauberis NCFD 2020]
 gi|326906889|gb|EGE53803.1| PAS domain S-box protein [Streptococcus parauberis NCFD 2020]
          Length = 453

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 91/404 (22%), Positives = 170/404 (42%), Gaps = 32/404 (7%)

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDT-RINKRKMEIEVMQLCSILEATSDGIAIINREG 472
            +          E M  +    +  D  R+    +  E  +L SIL   +DG+   +R G
Sbjct: 55  RYTDDINLRADMELMDLSEQLNDLSDVFRLTHENLAQEKNRLASILAYMTDGVLATDRSG 114

Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
            IL  N           E  L+K  T  L+ + P      +++   + + +  E      
Sbjct: 115 QILMINETAQNQLNMTKEQALKKNITDLLDADEPYTYRELVSKTPIVTISRRDE------ 168

Query: 533 TKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
           T E   L LR  + +      S   + +HD +E ++E+ +                 F++
Sbjct: 169 TGEFNSLRLRFALNRRESGFISGLVVVIHDTTEQEKEERERRL--------------FVS 214

Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650
            VSHE+RTPLT++  + E +     G +       +        N ++ ++ DLL++S+I
Sbjct: 215 NVSHELRTPLTSVKSYLEAL---DEGAIKEDIAPSFIKVSLDETNRMMRMITDLLNLSRI 271

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLV-----QLYANEKRILIRTSFANNIPRILADLRSVK 705
           ++    L  E  +    ++  ++       Q   + K   I   +  N   +  D   + 
Sbjct: 272 DNQATRLTVEMTNFTAFMTSILNRFDLVKNQNTISGKSYEIIRDYPINSIWVEIDNDKMT 331

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           Q+  NIL+NAI ++P GG+I +    T N ++I+ + D G+G+   +L      F ++  
Sbjct: 332 QVVENILNNAIKYSPDGGKITVKMKTTDN-QLIISISDQGLGIPKKDLPLIFDRFYRVDK 390

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           ++     GTGLGL +AK ++  + G  +  S  +KG+   I+ P
Sbjct: 391 ARSRAQGGTGLGLSIAKEIIKQHQGFIWAKSEYSKGSTFTIVLP 434


>gi|312877756|ref|ZP_07737708.1| multi-sensor signal transduction histidine kinase
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311795475|gb|EFR11852.1| multi-sensor signal transduction histidine kinase
           [Caldicellulosiruptor lactoaceticus 6A]
          Length = 566

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 77/378 (20%), Positives = 157/378 (41%), Gaps = 60/378 (15%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            ++E E  +L  IL+  SDG+  +N +  I+  N +  +                     
Sbjct: 239 SELEFEKQKLERILQNMSDGVLAVNSKNEIIHINESAKRFL------------------- 279

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR-IIIKKLPFSSCYSLTMHDISE 563
               +  +L  + S       ++I      +   L +           +     +HDI++
Sbjct: 280 -KGDVERFLEHVQSDKDWCVTQRIYEV---DGWTLEVSTASFIDSYQGTGTIFILHDITQ 335

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             +                  +  F+A VSHE+RTP+T I  +SE + +     + +   
Sbjct: 336 QAKL--------------DRMRKQFVADVSHELRTPITTIKTYSETLLD-----VDDETV 376

Query: 624 IE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
            + + N I +  + +  +++DLL +S+++SG+  L  E V++ E V      ++++A +K
Sbjct: 377 KKKFLNVIIKECDRMTRLISDLLYLSRLDSGENILKIEEVNISELVRFVCEKMRIHAKKK 436

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
              +  S   N+  I AD   ++Q+ +N+++NA+ +   GGQI +       E V + V+
Sbjct: 437 NQKLLCSTQENV-VIEADRDRLEQVLINLINNAVVYVQEGGQIEVGLE-KDEEHVRITVK 494

Query: 743 DTGVGMTNYELEKAMKPFGQIPNS-------QQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
           D G G+   +L +  + F ++  +         +          +A  +V A+ GK  + 
Sbjct: 495 DNGPGIPQEDLPRIFERFYRVDKARSRSLGGSGLGLS-------IADEIVKAHGGKILVE 547

Query: 796 STPAKGTLIEIIFPLYDT 813
           S    GT   ++ PL  +
Sbjct: 548 SKEGVGTTFTVVLPLKRS 565


>gi|219851326|ref|YP_002465758.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanosphaerula palustris E1-9c]
 gi|219545585|gb|ACL16035.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanosphaerula palustris E1-9c]
          Length = 929

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 81/676 (11%), Positives = 200/676 (29%), Gaps = 89/676 (13%)

Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDD 252
                 + ++  L +       V    + +    +    L      ++           +
Sbjct: 282 RFFAEAETRYRQLIQTAVDAIIVLDPAFRVILWNTGAERLYGYTSEEMVGSPISCIFPFE 341

Query: 253 VLKT--EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310
             +    +   +   E+    + +  T + ++         + ++  +        +  +
Sbjct: 342 QKEEILHQLEKIRQGETIERVETERVTKDGSRRLISLSLSPILSSDGDFIGISDIAHDIT 401

Query: 311 LSAYFD----EGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGG 365
               F     + +N    T D  P    +      +   N +          + +     
Sbjct: 402 ERQRFQNEILKAKNRWERTFDAVPDMIAIVDKHFRIVQVNRAMADSIGISPEEVVG--MT 459

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
              ++              +L                      ++           +   
Sbjct: 460 CYEVIHHSSTPPTICPHQKLLQDYQSHSTDLH--------EDTSNKDFFLTVSPIQDPLG 511

Query: 426 ENMPQNGIEPEDVDTRINKRKM-----------------------------------EIE 450
                  I  +  + +  +  +                                      
Sbjct: 512 NVRGSVHILRDITERKRAEEALIRSNEELNELNEELTATEEEMKMNNEELMTAEKMLRES 571

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSK------LFGY--PVEDILRKPFTVFLE 502
             +L   L+ +  G    +        N    +      +FGY  P      K F   + 
Sbjct: 572 EARLALALDISGMGTLDCD------MVNHTSWRSLRHDQIFGYKTPPSTWNLKIFIDHVL 625

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTM 558
                ++    ++  +   +            + ++  +          +         +
Sbjct: 626 PEDQEMVRKIFSDAFAS--QSDWRFECRIRRTDGEIRWIEKTGLGQYDDAGRPLRVLGLL 683

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            DI+E KQ +       +     +     +    SH+++ PL +I+ FS+ + ++R+   
Sbjct: 684 LDITERKQFETTQKKYAEKLMASNEELQRYAYVASHDLQEPLRSIVSFSQ-LLDRRYRGK 742

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
            +    EY  +I   G  +  ++ DLL +S+IE+    L   P   +  V+++I  ++  
Sbjct: 743 LDKDADEYIKFIVDGGVRMQALIKDLLQVSRIETQAQPL--APTDANAVVADSIRSLKTP 800

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF----TPSGGQIIISTTHTSN 734
            ++    +       +P ++AD   ++QI  N++ NAI +     P    I +S      
Sbjct: 801 IHDNNARVTVD---PLPIVMADPSQLEQIFTNLIGNAIKYHRPEMPP--AITVSAE-RHG 854

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
                 VRD G+G+     ++  + F ++        EGTG+GL + K +V+ + G+  I
Sbjct: 855 NWWEFSVRDNGIGIKAEFFDRIFEMFRRLH--TIDEYEGTGIGLAIVKKIVERHGGRIRI 912

Query: 795 FSTPAKGTLIEIIFPL 810
            S   +G+      P+
Sbjct: 913 ESELGEGSTFFFTLPV 928



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/407 (8%), Positives = 104/407 (25%), Gaps = 45/407 (11%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNT-WYGKT 147
           +D    +   +    +  G  + +M+G  +  +      +   H  + +++  T    +T
Sbjct: 305 LDPAFRVILWNTGAERLYGYTSEEMVGSPISCIFPFEQKEEILHQLEKIRQGETIERVET 364

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                +G+     I L+  PI S + +F G     I H        +    +   ++   
Sbjct: 365 ERVTKDGS--RRLISLSLSPILSSDGDFIGIS--DIAHDITERQRFQNEILKAKNRWERT 420

Query: 208 HEIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
            +      ++  + + I                +V  +T Y             P     
Sbjct: 421 FDAVPDMIAIVDKHFRIVQVNRAMADSIGISPEEVVGMTCYEVIHHSSTPPTICPHQKLL 480

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE-------- 317
           +       D H  + +          +Q+        +      +     +E        
Sbjct: 481 QDYQSHSTDLHE-DTSNKDFFLTVSPIQDPLGNVRGSVHILRDITERKRAEEALIRSNEE 539

Query: 318 ------------------------GENLTPETVDKCPIPFFVYSHGNL--FYANPSFLLL 351
                                    E +  E+  +  +   +   G L     N +    
Sbjct: 540 LNELNEELTATEEEMKMNNEELMTAEKMLRESEARLALALDISGMGTLDCDMVNHTSWRS 599

Query: 352 TKYKSVDDIEIAGGLSTL--LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
            ++  +   +       L       L ++  +   +   +  +          I+     
Sbjct: 600 LRHDQIFGYKTPPSTWNLKIFIDHVLPEDQEMVRKIFSDAFASQSDWRFE-CRIRRTDGE 658

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
              +      + +     +   G+  +  + +  +   +    +L +
Sbjct: 659 IRWIEKTGLGQYDDAGRPLRVLGLLLDITERKQFETTQKKYAEKLMA 705


>gi|218245686|ref|YP_002371057.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8801]
 gi|218166164|gb|ACK64901.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8801]
          Length = 844

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 108/572 (18%), Positives = 205/572 (35%), Gaps = 77/572 (13%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
               +  +  E+     V+        +   G + + N ++           +  +    
Sbjct: 57  EEAKSALEASESRYQAIVEDQTELICRFRQDGTVTFVNQAYCRYFNLTPEQIVGKSFL-- 114

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
                P +   N  K     +            H +           +      +   + 
Sbjct: 115 -----PLIPAENQEKVSQDLKGLTQQNPVIIHEHQVIAPTGEMGWHQWTNRGIFDDKGQV 169

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQ---LCSILEATSDGIAIINREGIILSTNRAVSKL 484
                +  +    +  + ++   + +   L  I E   +    ++ E I+  T     ++
Sbjct: 170 REIQAVGRDITQLKQIEAELRQTLEKEKTLNQIAERIRE---SLDIEDILNKTCEETRQI 226

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
                  + +       E    SV   ++  ++   +++  +   L  TK  +    +I 
Sbjct: 227 LECDRVAVYQFKPDWSGEFIAESVALGWVP-LVGETVKKVWQDTFLQRTKGGRYKYNQIF 285

Query: 545 IKKLPFSSCYSLTMHDISEWKQEKN----------------------------------- 569
             K  +++ +     D+ E  Q +                                    
Sbjct: 286 AVKDIYTAGHQQCHLDLLEQFQARAYLIIPIFVQNQLWGLLASYQNSAPRDWSPQNIKLL 345

Query: 570 ------------------KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
                             +L   K  AE  +  KS FLA +SHE+RTPL AI+GFS+++ 
Sbjct: 346 KQISIQLGLALQQGELLSQLQKTKNAAEAANRAKSQFLAHMSHELRTPLNAILGFSQLL- 404

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
                   N    EY + I+RSG  +L ++ D+LD++KIE+G++ L     +L   +   
Sbjct: 405 --NHDSTLNEEQQEYIDIINRSGEHLLALIQDILDMAKIEAGQITLQRNSFNLHRLIQTL 462

Query: 672 ISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
             +  L A +K + +      +IP  IL D   ++Q+ +N+LSNAI FT  G QII+  +
Sbjct: 463 EQMFYLKAQDKGLQLFVEIDPSIPAYILTDEGKLRQVLINLLSNAIKFTQRG-QIILRVS 521

Query: 731 HTSNEE---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
              + E   ++  V D+G G+   E  K   PF Q    ++ + EGTGLGL +++  V  
Sbjct: 522 EKPDPETPYLLFEVEDSGPGIECDEAPKLFNPFFQTELGRKTQ-EGTGLGLAISRHFVSI 580

Query: 788 NMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819
             G  ++    + GTL     P+        C
Sbjct: 581 MGGSLWVSCPLSGGTLFHFDLPVEFACSEESC 612



 Score = 45.8 bits (107), Expect = 0.033,   Method: Composition-based stats.
 Identities = 13/128 (10%), Positives = 35/128 (27%), Gaps = 3/128 (2%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151
            G +  +++   +       +++G     +    + +  +     L +QN          
Sbjct: 87  DGTVTFVNQAYCRYFNLTPEQIVGKSFLPLIPAENQEKVSQDLKGLTQQNPVIIHEHQV- 145

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
           I  T            I+    +    +  G            A  ++  +K   L++I 
Sbjct: 146 IAPTGEMGWHQWTNRGIFDDKGQVREIQAVG--RDITQLKQIEAELRQTLEKEKTLNQIA 203

Query: 212 KGHSSVEK 219
           +       
Sbjct: 204 ERIRESLD 211


>gi|325280822|ref|YP_004253364.1| multi-sensor signal transduction histidine kinase [Odoribacter
           splanchnicus DSM 20712]
 gi|324312631|gb|ADY33184.1| multi-sensor signal transduction histidine kinase [Odoribacter
           splanchnicus DSM 20712]
          Length = 936

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 92/518 (17%), Positives = 193/518 (37%), Gaps = 36/518 (6%)

Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
                D  E +     D  P    +Y  +G L   N   + +    + + +         
Sbjct: 429 THQALDRSEKILRNIYDNLPAGIELYDKNGFLIDLNTKDMEIFGIANKETVLGVNLFENP 488

Query: 370 -LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
            L    +      + +            S   +     +   L +     E  +     +
Sbjct: 489 NLPLHIIEALRRKEAITFRIK----YPLSTIKNYYSSKKNGLLEIYTTATELYDSQGNLI 544

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG--IILSTNRAVSKL-- 484
               I  ++ +      ++           E++   ++   + G        R    +  
Sbjct: 545 NYLLINIDNTEITQVYSQLAE--------FESSFSMVSKFGKIGYCRFDIWTRTGYGIPQ 596

Query: 485 FGYPVEDILRKPFTVFL------EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
           + Y + +    P +  +             +   + ++ +  +    + + + + +  K 
Sbjct: 597 WYYNLGEEATTPLSEIIGVYKHVHPEDRDYILKSIQQMKAGVIESFFKDLRITTAEGNKW 656

Query: 539 LSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
             + +I   +             +D++E K+ + +L  AK+ AE+    KS FLA +SHE
Sbjct: 657 TRINVIRNTMNDDPQKLDMICVNYDVTELKETEQRLIEAKERAEESDRLKSAFLANMSHE 716

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           IRTPL AI+GFS+++               Y   +  +  L+L +++D+LD+SKIE+G  
Sbjct: 717 IRTPLNAIVGFSDLLAESD----DREERFGYLKIVQENNELLLQLISDILDLSKIEAGTF 772

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715
               + V++ +  +E +    +     ++ +     + +  I +D   V Q+  N ++NA
Sbjct: 773 KFINDRVNVYQLCNEIVRSYSIKIKNHQVKLIFDEQSPVYYITSDKNRVIQVLSNFINNA 832

Query: 716 IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           + FT  G  I +      N E+ L V DTG G+   + +     F ++        +GTG
Sbjct: 833 LKFTSQG-TITLGYELLPNHELKLYVCDTGQGIAEEKQKVIFDRFVKLNTF----VQGTG 887

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
           LGL + K++V    G+  + S   +G+      P+  T
Sbjct: 888 LGLSICKSLVKQMGGQIGVNSKEGEGSCFWFTHPISLT 925



 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/273 (12%), Positives = 82/273 (30%), Gaps = 15/273 (5%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
                      +         P+ +           NP  L L    ++   +I G  + 
Sbjct: 304 QKSRQEAQTERDYLQNLYKHMPLGYLRARILYDQQQNPVDL-LFTDANLAAKKITGKSNF 362

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
                     +    ++   +           H +    +    ++++            
Sbjct: 363 NGLRASSLGLDFSSNLLQLTTLSPNKDYLDDTHFVSRINKYFHFISYMTRPDE------- 415

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
               +  +  +T    + ++     L +I +    GI + ++ G ++  N    ++FG  
Sbjct: 416 -VIYLFSDITETFNTHQALDRSEKILRNIYDNLPAGIELYDKNGFLIDLNTKDMEIFGIA 474

Query: 489 VED-ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLRIIIK 546
            ++ +L              +      E ++  ++  L  I    S+K+  LL +     
Sbjct: 475 NKETVLGVNLFENPNLPLHIIEALRRKEAITFRIKYPLSTIKNYYSSKKNGLLEIYTTAT 534

Query: 547 KLPFSSC----YSLTMHDISEWKQEKNKLSHAK 575
           +L  S      Y L   D +E  Q  ++L+  +
Sbjct: 535 ELYDSQGNLINYLLINIDNTEITQVYSQLAEFE 567


>gi|77164777|ref|YP_343302.1| hybrid signal transduction histidine kinase and diguanylate
           cyclase/phosphodiesterase [Nitrosococcus oceani ATCC
           19707]
 gi|76883091|gb|ABA57772.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Nitrosococcus oceani ATCC
           19707]
          Length = 1499

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 82/262 (31%), Positives = 135/262 (51%), Gaps = 8/262 (3%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           ++  +  + +L  A+  A + +  K +F A VSHEIRTPL  +IG  E++KN       N
Sbjct: 249 MTVLEAREQELEKARDAALESARIKGEFAANVSHEIRTPLNGVIGILELLKNMGL----N 304

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
           P+  EY      SG  +L+++ ++LD S+IESGK  L      L E + + I L+   A 
Sbjct: 305 PKQREYVQAACNSGETLLELIGNILDFSRIESGKFKLDPINFHLQEILDDVIGLLAAQAQ 364

Query: 681 EKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVI 738
            K + +     +N+P  +  D   ++QI +N+++NA+ FT  G   I +S      E+++
Sbjct: 365 RKELELGYVVLDNVPLSLRGDSARIRQILINLMANAVKFTDRGEVSIEVSLLEKKAEKLV 424

Query: 739 --LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
               VRDTG+G+      +  + F Q  +S   +  GTGLGL + + +VD   G   + S
Sbjct: 425 LHFEVRDTGIGIPVEFRARVFEAFSQADSSTTRKYGGTGLGLAICRQLVDLMGGDIGVES 484

Query: 797 TPAKGTLIEIIFPLYDTSHPHD 818
              KG++     PL +TS P +
Sbjct: 485 GSGKGSIFWFTAPLEETSAPQE 506


>gi|328469859|gb|EGF40770.1| putative two-component sensor [Vibrio parahaemolyticus 10329]
          Length = 632

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 73/260 (28%), Positives = 129/260 (49%), Gaps = 8/260 (3%)

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
             + + ++ + +L   +  AE  +  KS+FLA +SHEIRTP+  IIG + ++ + +    
Sbjct: 218 RSVQKVREHQAELEAERDKAEVANRKKSEFLATMSHEIRTPMNGIIGVASLLSDTKL--- 274

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
            +P+  E+   ID S   ++ I++D+LD SK+E+GK+ L  E     + + + ISL  + 
Sbjct: 275 -DPQQKEFVEIIDNSSQSLMTIIDDILDFSKVEAGKVELASETYHFRQLLDDVISLHTVK 333

Query: 679 ANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQ---IIISTTHTSN 734
           A +K + + +     +P  +  D   +KQ+  N+LSNA+ FT  G     + +   +   
Sbjct: 334 AQQKNLQLLSDIDPKLPAEVQGDEGRLKQVLNNLLSNAVKFTERGHVKLLVSLHEQNNDI 393

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
            +V  RV D+G+G+     +   + F Q   S   +  GTGLGL +   +V    G   +
Sbjct: 394 AQVRFRVVDSGIGIAKEHQQAVFERFQQADGSTTRKYGGTGLGLAICAQLVHIMGGDIKL 453

Query: 795 FSTPAKGTLIEIIFPLYDTS 814
            S    G+  +   PL   S
Sbjct: 454 TSELGLGSCFDFTIPLTVVS 473


>gi|291523440|emb|CBK81733.1| Signal transduction histidine kinase [Coprococcus catus GD/7]
          Length = 986

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 99/365 (27%), Positives = 171/365 (46%), Gaps = 12/365 (3%)

Query: 460 ATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEI 516
              D   +++ +       ++ V KL G  VE I +          + +     +YL EI
Sbjct: 346 NVDDVFLMLDAKTYQADYVSQNVEKLLGITVEQIRKDICILGKLHPEESEDSEKNYLKEI 405

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKK 576
              + R+   +     T E++   +  +  ++     Y L M D +   +    LS A  
Sbjct: 406 QVYEQREWNFECVHQKTGEKRWFYIVAMGSEVNGEKKYILVMSDRTSDWKMNQALSEAVH 465

Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
            AE  +  KS FL+ +SH+IRTP+ AIIGF+ +  +         R  +Y   I  S N 
Sbjct: 466 AAETANRAKSIFLSNMSHDIRTPMNAIIGFTTLAVSNID---DRKRVRDYLGKILSSSNH 522

Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS-FANNIP 695
           +L ++ND+LD+S+IESGK++L    VSL + + +  +++    + K++ +          
Sbjct: 523 LLSLINDILDMSRIESGKLHLEETEVSLSDVLHDLKTIISGQIHAKQLELYMDAMDVTNE 582

Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTT-----HTSNEEVILRVRDTGVGMTN 750
            +  D   + Q+ LN+LSNA+ FTP+GG + +           +E   +RV+D G+GM+ 
Sbjct: 583 DVYCDKTRLNQVLLNLLSNAVKFTPAGGTVSVRIRQCPGTVKGSELYEIRVKDNGIGMSQ 642

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             ++K   PF +   S   R +GTGLG+ + K +V+   G   + +   KGT   +  PL
Sbjct: 643 EFVQKIFSPFERERTSTVSRTQGTGLGMAITKNIVNMMGGTIEVQTEQGKGTEFIVRLPL 702

Query: 811 YDTSH 815
              S 
Sbjct: 703 RIQSE 707


>gi|281177570|dbj|BAI53900.1| two-component sensor kinase [Escherichia coli SE15]
          Length = 431

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 74/427 (17%), Positives = 151/427 (35%), Gaps = 37/427 (8%)

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             +L       I     L  + W     L +         +        G+    +  + 
Sbjct: 33  WFLLASVTGLLIWHFWNLLRLSW----WLWVDRSMTPPPGRGSWEPLLYGLHQMQLRNKK 88

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            +R++   + +  S  E+  D + +   EG I   N    ++ G    +   +     L 
Sbjct: 89  RRRELGNLIKRFRSGAESLPDAVVLTTEEGGIFWCNGLAQQILGLRWPEDNGQNILNLLR 148

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
               +               +   +         + L +R++           +   D++
Sbjct: 149 YPEFTQYL----------KTRDFSRPLNLVLNTGRHLEIRVMPYTHKQ---LLMVARDVT 195

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  Q +                + +F A VSHE+RTPLT + G+ E++  Q        +
Sbjct: 196 QMHQLEG--------------ARRNFFANVSHELRTPLTVLQGYLEMMDEQPLEGAVREK 241

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                + +      +  +V  LL +SKIE+   +L  E V +   +       Q  + +K
Sbjct: 242 A---LHTMREQTQRMEGLVKQLLTLSKIEAAPTHLLNEKVDVPMMLRVVEREAQTLSQKK 298

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           +        N + ++  +   ++    N++ NA++ TP G  I +      +      V 
Sbjct: 299 Q-TFTFEIDNGL-KVSGNEDQLRSAISNLVYNAVNHTPEGTHITVRWQRVPHG-AEFSVE 355

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G G+    + +  + F ++  ++  +  G+GLGL + K  V+ +  +  I ST  KGT
Sbjct: 356 DNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHAVNHHESRLNIESTVGKGT 415

Query: 803 LIEIIFP 809
               I P
Sbjct: 416 RFSFIIP 422


>gi|240141079|ref|YP_002965559.1| putative sensor hybrid histidine kinase with multiple PAS/PAC and
           response regulator receiver domains [Methylobacterium
           extorquens AM1]
 gi|240011056|gb|ACS42282.1| putative sensor hybrid histidine kinase with multiple PAS/PAC and
           response regulator receiver domains [Methylobacterium
           extorquens AM1]
          Length = 1086

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 103/777 (13%), Positives = 211/777 (27%), Gaps = 73/777 (9%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYG--- 145
                    +    + I +    ++G  + +    +        + D+     T      
Sbjct: 185 GPDHAFAFANAAYRQLIAHR--DVLGRPVREALPEIEGQGFFELLDDVFSTGRTHTAHGA 242

Query: 146 -KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
             T L    G      +D    P+       +G   F             A     + +F
Sbjct: 243 PVTILRVPGGMPERRFLDFVYQPMRDAAGTITGV--FVDGSDVTERITGNAALAESEARF 300

Query: 205 SHLHEIKKGHSSVEKEKY--DIFSQQSPPPHLRMKNKVSSLTEYYA-HKDDVLKTEKYPL 261
             + +       V          +++      + + +   L    A H DD   +    L
Sbjct: 301 RTMADDAPVMMWVTGPDGACQYLNRRWYDFTGQNEAQALGLGWLEAVHPDDRGWSGDTFL 360

Query: 262 LT-SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE----SFEYLSHRNHPSLSAYFD 316
              +       +      +                           +      +      
Sbjct: 361 RANARHEGFSLEYRLRRRDGVYRWAIDTASPRFAADGSFLGYIGSVVDIEERRAAELALA 420

Query: 317 EGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
           E E      V+   I  + +       +  P    +       D+ +      L      
Sbjct: 421 ESEERLRLAVESGEIGLWDFDPRAGTLFWPPRIKAMFGLAPDADVTLDDFADGLHPD--- 477

Query: 376 SDNNAIKPVMLYRSDRTCIAA-SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
            D   +        D    A        I         +        +     +   G  
Sbjct: 478 -DRARVTAAFAAALDPVARAFYDEEFRAIGRADGTVRWVAAKGRGVFDAEGRCLRGVGSA 536

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
            +    +  + ++     +L ++L+  +  I +++        NRA  +L GY +++   
Sbjct: 537 IDITARKATEERLVEATRRLDAVLDNATQAIFMMDERQHCAYMNRAAERLTGYSLDETHG 596

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI---TLGSTKEEKLLSLRIIIKKLPFS 551
           K     +    P    + L E           +     +   ++     +      +   
Sbjct: 597 KALHDVVHHTRPDGSPYPLHECPIDQAFPENNQEQGQEIFVHRDGSFYPVAFTASPIRDE 656

Query: 552 S----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS--------------------D 587
                   +   +I    + K +L       E++   ++                     
Sbjct: 657 GGTPIGTVIEARNIEGELRAKAQLEAFNASLEQQVLARTAELMRTEEALRQSQKMEAVGQ 716

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
               ++H+    LT I G  E +   R           Y N    +      + + LL  
Sbjct: 717 LTGGLAHDFNNLLTGITGSLE-LLQTRLAQGRITEIDRYVNAAQGAAKRAAALTHRLLAF 775

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707
           S+    +  L  +P  ++  V     L++       I +    A  +  +L D   ++  
Sbjct: 776 SR----RQTLDPKPTDVNRLVMGMEDLLRRTI-GPSITLEVVAAGGLWSVLVDPSQLENA 830

Query: 708 ALNILSNAIHFTPSGGQIIISTT-------------HTSNEEVILRVRDTGVGMTNYELE 754
            LN+  NA    P GG+I I T                  + + L V D+G GM+   + 
Sbjct: 831 LLNLCINARDAMPDGGRITIETANKWLDDRGAKERDLDPGQYLSLCVTDSGTGMSPDVIA 890

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
           KA  PF          G+GTGLGL +    V  + G+  I+S   +GT + +  P +
Sbjct: 891 KAFDPFFTTKP----IGQGTGLGLSMIYGFVRQSGGQVRIYSEVGQGTTMCLYLPRH 943



 Score =  144 bits (362), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 48/532 (9%), Positives = 130/532 (24%), Gaps = 33/532 (6%)

Query: 82  TVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN 141
            +   W      ++   ++      G    + +G    +V   +       +      + 
Sbjct: 51  PMLIVW---GEAHVTLYNDGYAPMCGARHPRALGQAFDEVWHDIWDQVGPILSRAYAGEG 107

Query: 142 TW-YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
           T            G            P+   +   +G   F                   
Sbjct: 108 THMDDIALTMHRNGYPEETHFAFGYTPVRIEDGTVAGM--FCACSETTASVRAGRQMHAE 165

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
            ++F+ L E      +V       F+  +      + ++            ++     + 
Sbjct: 166 RERFARLFEQSPSFVAVLDGPDHAFAFANAAYRQLIAHRDVLGRPVREALPEIEGQGFFE 225

Query: 261 LLTS------EESSLPEQEDFHTINL---NQYTKKQYFGTLQNNSKESFEYL----SHRN 307
           LL          ++         +      +      +  +++ +               
Sbjct: 226 LLDDVFSTGRTHTAHGAPVTILRVPGGMPERRFLDFVYQPMRDAAGTITGVFVDGSDVTE 285

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
             + +A   E E       D  P+  +V    G   Y N  +   T       +   G L
Sbjct: 286 RITGNAALAESEARFRTMADDAPVMMWVTGPDGACQYLNRRWYDFTGQNEAQAL-GLGWL 344

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
             +    +    +               +   RL   +               +      
Sbjct: 345 EAVHPDDRGWSGDTFLRANARH---EGFSLEYRL---RRRDGVYRWAIDTASPRFAADGS 398

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
            +   G   +  + R  +  +     +L   +E+   G+   +     L     +  +FG
Sbjct: 399 FLGYIGSVVDIEERRAAELALAESEERLRLAVESGEIGLWDFDPRAGTLFWPPRIKAMFG 458

Query: 487 YPVE-DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS-TKEEKLLSLRII 544
              + D+    F   L  +  + +       L    R   ++        +  +  +   
Sbjct: 459 LAPDADVTLDDFADGLHPDDRARVTAAFAAALDPVARAFYDEEFRAIGRADGTVRWVAAK 518

Query: 545 IKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
            + +  +         +  DI+  K  + +L  A +  +    + +  +  +
Sbjct: 519 GRGVFDAEGRCLRGVGSAIDITARKATEERLVEATRRLDAVLDNATQAIFMM 570


>gi|229151836|ref|ZP_04280035.1| hypothetical protein bcere0011_33780 [Bacillus cereus m1550]
 gi|228631649|gb|EEK88279.1| hypothetical protein bcere0011_33780 [Bacillus cereus m1550]
          Length = 478

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 97/503 (19%), Positives = 194/503 (38%), Gaps = 39/503 (7%)

Query: 321 LTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
           +     +  P     +   G + + NPS   +  Y S++ +E     S L       + +
Sbjct: 1   MYASLFEHNPDSIISLNLEGVILHINPSAERILGYTSLE-LEQKNITSIL-------EAH 52

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
             + V+    +         + +I       L +         Q         ++P +  
Sbjct: 53  ISEQVLQNIKNTEADNQQEYILSIYHKNGFLLDVVTKLVPIFVQNRLTGVYAIMKPLEKS 112

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
            RI +  ++    +L +++ +    +   + EG  L  N      F +       K  + 
Sbjct: 113 ERI-ENMLKESEKRLRTLVNSMPAFVIFKDHEGRWLEANDYALSCFNFHHVPYHGKKDSE 171

Query: 500 FLEQNTPSVMN----HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-- 553
            ++ N            + E+     RQ L        +++  L L I    L       
Sbjct: 172 LIQYNEAYREAFLHCEEIDELAWQ-QRQILHGEEFIIHRDDFDLILSISKVPLYHPDGSR 230

Query: 554 --YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
               +   D++E K+ +  L  ++K+A           A ++HEIR PLT++ GF  ++ 
Sbjct: 231 KGLIVMGRDVTELKETEKLLRKSEKLAVV-----GQLTAGIAHEIRNPLTSLKGFLTLLL 285

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
                P  +     Y + +    + +  I +  + +SK +     L  +  ++   + E 
Sbjct: 286 -----PEISEEQKWYIDVMLSEISQMESITSQFMAMSKPQ----VLSIQTCNIQTLIEEV 336

Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
           ++ +   A    + I     + +  I  D   +KQ+ +NIL NAI   P+GG I I T  
Sbjct: 337 VTFILPTAIMHSVHIIMDHFDYVYDIQCDGNQLKQVFINILKNAIEAMPNGGNIFIQTKP 396

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
             N  +++R+ D G G+    + +  +PF        ++ +GTGLGL +   +++ + GK
Sbjct: 397 LENNFILIRIIDEGCGIPEDRISRLGEPFY------SLKEKGTGLGLMMCYKIIEEHHGK 450

Query: 792 FYIFSTPAKGTLIEIIFPLYDTS 814
            +I S   KGT+++I  PL  + 
Sbjct: 451 LHISSELNKGTIVDIELPLSSSH 473


>gi|152983714|ref|YP_001348485.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           PA7]
 gi|150958872|gb|ABR80897.1| probable sensor/response regulator hybrid [Pseudomonas aeruginosa
           PA7]
          Length = 650

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 86/523 (16%), Positives = 180/523 (34%), Gaps = 38/523 (7%)

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364
               P +         L  E VD   I   +   G +   +   + L  ++  + +    
Sbjct: 3   STGKPQVPLNHAARNRLLDEAVDDYAIH-TLDRTGRIASWSAGAMRLFGHEGSEILGQ-- 59

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
             + L            + +    SD       +    ++ + +   A   I     +  
Sbjct: 60  DYACLHTRKDREAGLPQRALRQADSDGR---FRSEGWRVRRSGKRFWAQVVIDAI-RDSE 115

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSK 483
            + +    +  +  + R  +  +     Q   ++++ +D  I +++  G I + N    +
Sbjct: 116 GQLLGFAQLVHDLSEGRAAREALRHSQEQFRLLVQSVTDYAIYMLDHRGRITNWNLGAQR 175

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           + GY  E+++ + F+ F               + + +     EK      K+       +
Sbjct: 176 IKGYLPEEVIGRHFSCFYTPEDREAGEPE-RGLAAAEREGRFEKEGWRVRKDGSRFWANV 234

Query: 544 IIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSH--KSDFLARVSHEIR 597
           +I  +   +   +       DI+   + + +L  A++   +             V+H+  
Sbjct: 235 VIDPIRDGNGRLIGFAKVTRDITHRIEAERELERARQELFQAQKMESLGHLTGGVAHDFN 294

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
             LT IIG   ++K +  G   + R  +       +      +   +L  ++    K  L
Sbjct: 295 NLLTVIIGSLGLLKKRLPG---DQRTADLLQNALEAAQRGATLTQRMLSFAR----KQRL 347

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
              P ++ + +     L+        + I T F  ++   L D   ++   +N+ +NA  
Sbjct: 348 DPRPCAIPDLLRGMTDLLIHSL-GPSVSIETRFPLDLDLALTDANQLELSIINLATNARD 406

Query: 718 FTPSGGQIIIST-----------THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
             P+GG+I  S                 + V L + DTG GM    L +A++PF      
Sbjct: 407 AMPNGGRITFSASNQRVESGNPHRLAPGDYVCLGISDTGSGMDEETLRRAVEPFYTTKG- 465

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
               G GTGLGL +   + +   G+  + S P  GT   I  P
Sbjct: 466 ---VGRGTGLGLSIVDGLAEQLGGRLTLQSQPGVGTTAIIWIP 505



 Score = 68.1 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 25/239 (10%), Positives = 50/239 (20%), Gaps = 5/239 (2%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + +D  G +   +    +  G    ++IG            +       L   +     
Sbjct: 157 IYMLDHRGRITNWNLGAQRIKGYLPEEVIGRHFSCFYTPEDREAGEPERGLAAAEREGRF 216

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +   W +         ++   PI   N    GF       V R         + L++   
Sbjct: 217 EKEGWRVRKDGSRFWANVVIDPIRDGNGRLIGF-----AKVTRDITHRIEAERELERARQ 271

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
            L + +K  S             +    +     +         +   L           
Sbjct: 272 ELFQAQKMESLGHLTGGVAHDFNNLLTVIIGSLGLLKKRLPGDQRTADLLQNALEAAQRG 331

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
            +       F                L+  +      L            D    LT  
Sbjct: 332 ATLTQRMLSFARKQRLDPRPCAIPDLLRGMTDLLIHSLGPSVSIETRFPLDLDLALTDA 390



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/244 (9%), Positives = 74/244 (30%), Gaps = 8/244 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D  G +   S    +  G+   +++G     +      +       L +  +    ++ 
Sbjct: 32  LDRTGRIASWSAGAMRLFGHEGSEILGQDYACLHTRKDREAGLPQRALRQADSDGRFRSE 91

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
            W +  +       +    I     +  GF    +VH        R   +   ++F  L 
Sbjct: 92  GWRVRRSGKRFWAQVVIDAIRDSEGQLLGFAQ--LVHDLSEGRAAREALRHSQEQFRLLV 149

Query: 209 EIKKGHSS-VEKEKYDIFSQQSPPPHLR--MKNKVSS--LTEYYAHKDDVLKTEKYPLLT 263
           +    ++  +   +  I +       ++  +  +V     + +Y  +D      +  L  
Sbjct: 150 QSVTDYAIYMLDHRGRITNWNLGAQRIKGYLPEEVIGRHFSCFYTPEDREAGEPERGLAA 209

Query: 264 SEESSLPEQEDFH-TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
           +E     E+E +    + +++        +++ +     +       +     +      
Sbjct: 210 AEREGRFEKEGWRVRKDGSRFWANVVIDPIRDGNGRLIGFAKVTRDITHRIEAERELERA 269

Query: 323 PETV 326
            + +
Sbjct: 270 RQEL 273


>gi|134299002|ref|YP_001112498.1| nitrogen-specific signal transduction histidine kinase NtrB
           [Desulfotomaculum reducens MI-1]
 gi|134051702|gb|ABO49673.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfotomaculum reducens MI-1]
          Length = 578

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 86/396 (21%), Positives = 175/396 (44%), Gaps = 31/396 (7%)

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCS-------ILEATSDGIAIINREGIILSTNRA 480
           +         +     +++++     L +       I  A S G+ I+N EGI+   N+A
Sbjct: 203 VAATKAVEAAIKQGQMEKQLQDTRKTLRNLMQQRNIIFNAMSQGVIILNHEGIVTFFNKA 262

Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
             +++    ++++ +PF  F            +  +   +    +E        E K + 
Sbjct: 263 AEEIWHINADELVGRPFFCF--SRCRRAEPLLIRSLKEANSFTNIECKCSNLLHE-KYIL 319

Query: 541 LRIIIKKLP--FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
           + I + +      S       D++E ++++ ++   +K+A           A ++HEIR 
Sbjct: 320 VNISLLRDEKNAVSGAIGIYTDVTELRRQEARIREQEKLAVV-----GQMAAGMAHEIRN 374

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
           PLT++ GF++ + +++     NP Y E+   + +  +     +N+ L +++         
Sbjct: 375 PLTSVRGFAQ-LMSEKMAEEQNP-YKEFMEIMIQEIDQADSFINNFLQLARP----KPPK 428

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718
            +  SL++ +   I + +  A  + + I       IP I+ D   +KQ+ LN+  NA+  
Sbjct: 429 MQACSLNQLILNFIKIFESQAFLQGVKIGIDL-GEIPTIVIDKDQIKQVLLNLCQNALQA 487

Query: 719 TPSGGQIIISTT-HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
               G I I+T  H + +EV L VRD G G+    ++K   PF    +      +GTGLG
Sbjct: 488 MNMQGTITIATRFHAAEKEVSLSVRDNGPGIPGDNIDKLGTPFFTTKD------KGTGLG 541

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
           L ++  +VD + G+  + ST  +GT  ++  P+Y+ 
Sbjct: 542 LSISYTIVDKHQGRIEVESTIDEGTCFKVYLPVYEQ 577


>gi|291281303|ref|YP_003498121.1| Signal transduction histidine kinase [Escherichia coli O55:H7 str.
           CB9615]
 gi|290761176|gb|ADD55137.1| Signal transduction histidine kinase [Escherichia coli O55:H7 str.
           CB9615]
          Length = 431

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 73/427 (17%), Positives = 151/427 (35%), Gaps = 37/427 (8%)

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             +L       I     L  + W     L +         +    +   G+    +  + 
Sbjct: 33  WFLLASVTGLLIWHFWNLLRLSW----WLWVDRSMTPPPGRGSWELLLYGLHQMQLRNKK 88

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            +R++   + +  S  E+  D + +   EG I   N    ++ G    +   +     L 
Sbjct: 89  RRRELGNLIKRFRSGAESLPDAVVLTTEEGGIFWCNGLAQQILGLRWPEDNGQNILNLLR 148

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
               +               +   +         + L +R++           +   D++
Sbjct: 149 YPEFTQYL----------KTRDFSRPLNLVLNTGRHLEIRVMPYTHKQ---LLMVARDVT 195

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  Q +                + +F A VSHE+RTPLT + G+ E++  Q        +
Sbjct: 196 QMHQLEG--------------ARRNFFANVSHELRTPLTVLQGYLEMMDEQPLEGAVREK 241

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                + +      +  +V  LL +SKIE+    L  E V +   +       Q  + +K
Sbjct: 242 A---LHTMREQTQRMEGLVKQLLTLSKIEAAPTQLLNEKVDVPMMLRVVEREAQTLSQKK 298

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           +        N + ++  +   ++    N++ NA++ TP G  I +      +      V 
Sbjct: 299 Q-TFTFEIDNGL-KVSGNEDQLRSAISNLVYNAVNHTPEGTHITVRWQRVPHG-AEFSVE 355

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G G+    + +  + F ++  ++  +  G+GLGL + K  V+ +  +  I ST  KGT
Sbjct: 356 DNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHAVNHHESRLNIESTVGKGT 415

Query: 803 LIEIIFP 809
               + P
Sbjct: 416 RFSFVIP 422


>gi|333010840|gb|EGK30266.1| phosphate regulon sensor kinase PhoR [Shigella flexneri K-272]
 gi|333021339|gb|EGK40592.1| phosphate regulon sensor kinase PhoR [Shigella flexneri K-227]
          Length = 431

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 71/427 (16%), Positives = 148/427 (34%), Gaps = 37/427 (8%)

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             +L       I     L  + W       +         +        G+    +  + 
Sbjct: 33  WFLLASVTGLLIWHFWNLLRLSW----WQWVDRSMTPPPGRGSWEPLLYGLHQMQLRNKK 88

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            +R++   + +  S  E+  D + +   EG I   N    ++ G    +   +     L 
Sbjct: 89  RRRELGNLIKRFRSGAESLPDAVVLTTEEGGIFWCNGLAQQILGLRWPEDNGQNILNLLR 148

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
               +               +   +         + L + ++           +   D++
Sbjct: 149 YPEFTQYL----------KTRDFSRPLNLVLNTGRHLEISVMPYTHKQ---LLMVARDVT 195

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  Q +                + +F A VSHE+RTPLT + G+ E++  Q        +
Sbjct: 196 QMHQLEG--------------ARRNFFANVSHELRTPLTVLQGYLEMMDEQPLEGAVREK 241

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                + +      +  +V  LL +SKIE+    L  E V +   +       Q  + +K
Sbjct: 242 A---LHTMREQTQRMEGLVKQLLTLSKIEAAPTQLLNEKVDVPMMLRVVEREAQTLSQKK 298

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           +        N + ++  +   ++    N++ NA++ TP G  I +      +      V 
Sbjct: 299 Q-TFTFEIDNGL-KVSGNEDQLRSAISNLVYNAVNHTPEGTHITVRWQRVPHG-AEFSVE 355

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G G+    + +  + F ++  ++  +  G+GLGL + K  V+ +  +  I ST  KGT
Sbjct: 356 DNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHAVNHHESRLNIESTVGKGT 415

Query: 803 LIEIIFP 809
               + P
Sbjct: 416 RFSFVIP 422


>gi|299065362|emb|CBJ36531.1| Sensor protein [Ralstonia solanacearum CMR15]
          Length = 995

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 97/571 (16%), Positives = 192/571 (33%), Gaps = 24/571 (4%)

Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
                    L       +P      T +         +     + +       +R     
Sbjct: 40  AQADGTTRALPPIGHPLMP-PAAAQTASGTPAAAIALWTLAVLSIRHVQLRRENRRRRRA 98

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
            A      +     ++  P P             N +F  L        +         L
Sbjct: 99  EADLARQLDFHHRLLESLPFPLAAQDTQHRYVAVNAAFCRLFGQPREALLGRTPAH---L 155

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
                      + +    +     A  A        RE  +     P    +  P     
Sbjct: 156 GRRCAHTAARAQDIDRRATATGQGAREALTIAAADGRERHVLYWVAPIHGPDGRPGGTVA 215

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII-----NREGIILSTNRAVSKLF 485
           + I+ +++     +   E    +L  + E+    +           G +       S+  
Sbjct: 216 SLIDIDEI-RDAQEAPAEQRAQRLHELTESLPALVCQFEMRPGTARGRMRHLAGNTSETL 274

Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
           G P      +  +     +           + S      L++       +  +  L +  
Sbjct: 275 GAPAGKARSRLPSPARLVHRDDRQRMRGAALQSAAQLTLLDQQFRHGDGDGPVRWLHVRA 334

Query: 546 KKLPFSSC---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
           +    +     ++  + D++  + + + L  A++ AE     K  FLA +SHEIRTP+  
Sbjct: 335 RPRRGADGCTVWNGYLRDVTAERAQADALVSARQAAESALRAKDRFLATMSHEIRTPMNG 394

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           ++G  E++   R                  S   +L +++D+LD +KIE+G++++   P 
Sbjct: 395 VLGLVELLLQTRLER----EQQRMVTLAQESSRALLHVLDDILDYAKIEAGRLSIAPAPT 450

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPS 721
            L   +   + L+   A+E+ + +R      +P  +  D   ++Q+  N+LSNAI FT  
Sbjct: 451 DLRALLDSTVGLLASRAHERSLAVRVDVDAAVPATVSVDGIRLRQVLSNLLSNAIKFTEH 510

Query: 722 GGQIIISTTH----TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
           G  + +S            +I++V DTG+G+          PF Q  ++   R  GTGLG
Sbjct: 511 GS-VRLSAACMEAAADTAHLIIQVADTGIGIAPEAQATLFTPFVQADSTVTHRHGGTGLG 569

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           L +++ +     G   + STP  GT + +  
Sbjct: 570 LAISRQLAQLMGGSLDMDSTPNVGTTLTLRL 600



 Score = 57.7 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 20/253 (7%), Positives = 60/253 (23%), Gaps = 16/253 (6%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS---DILHIDPNNHIGDLLKRQNTWYGK 146
           D       ++    +  G     ++G     +            +               
Sbjct: 124 DTQHRYVAVNAAFCRLFGQPREALLGRTPAHLGRRCAHTAARAQDIDRRATATGQGAREA 183

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI----VHVNRVDNDPRALGKRLDK 202
            T+   +G   +V   +A  PI+  +    G     I    +   +     +   +  + 
Sbjct: 184 LTIAAADGRERHVLYWVA--PIHGPDGRPGGTVASLIDIDEIRDAQEAPAEQRAQRLHEL 241

Query: 203 KFSHLH-----EIKKGHSSVE-KEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256
             S        E++ G +    +      S+    P  + ++++ S        D     
Sbjct: 242 TESLPALVCQFEMRPGTARGRMRHLAGNTSETLGAPAGKARSRLPSPARLVHRDDRQRMR 301

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
                  ++ + L +Q      +             +        +  +    +      
Sbjct: 302 GAALQSAAQLTLLDQQFRHGDGDGPVRWLHVRARPRRGADGC-TVWNGYLRDVTAERAQA 360

Query: 317 EGENLTPETVDKC 329
           +      +  +  
Sbjct: 361 DALVSARQAAESA 373


>gi|283786031|ref|YP_003365896.1| two-component system response regulator [Citrobacter rodentium
           ICC168]
 gi|282949485|emb|CBG89098.1| two-component system response regulator [Citrobacter rodentium
           ICC168]
          Length = 879

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 96/414 (23%), Positives = 170/414 (41%), Gaps = 32/414 (7%)

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDV---DTRINKRKMEIEVMQLCSILEATSDG 464
           E    +              +       E         + +++E        I+ +   G
Sbjct: 241 ERIRILILNAILLNVLVGAALFTLARMYERRIFIPAESDAQRLEEHEQFNRKIVASAPVG 300

Query: 465 IAIINR-EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
           I I+   +GI + +N            +  ++                 LT+I+      
Sbjct: 301 ICILRTVDGINILSNELAHTYLNMLTHEDRQR-----------------LTQIICGQQVN 343

Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
            ++      T     L +  +  +    +     + D+S   + +  L    + AE+ S 
Sbjct: 344 FVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSARVKMEESLQEMAQAAEQASQ 399

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
            KS FLA VSHE+RTPL  IIG  + +   +  P G  R       ++ S +L+L I++D
Sbjct: 400 SKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR---LVTAMNNSSSLLLKIISD 455

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLR 702
           +LD SKIES ++ +     S  E +S   +        K++ +      ++P  +  D  
Sbjct: 456 ILDFSKIESEQLKIEPREFSPREVMSHITANYLPLVVRKQLGLYCFIEPDVPVAMNGDPM 515

Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
            ++Q+  N+LSNAI FT  G  I++      ++ + +RVRDTGVG+   E+ +   PF Q
Sbjct: 516 RLQQVISNLLSNAIKFTDIG-CIVLHVQ-RDSDYLSIRVRDTGVGIPAKEVVRLFDPFFQ 573

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           +    Q   +GTGLGL + + ++    G   + S P  G+   +  PLY   +P
Sbjct: 574 VGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIPLYGAQYP 627


>gi|295676500|ref|YP_003605024.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1002]
 gi|295436343|gb|ADG15513.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1002]
          Length = 657

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 90/498 (18%), Positives = 180/498 (36%), Gaps = 24/498 (4%)

Query: 331 IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN-AIKPVMLYRS 389
                 +  +L  A     +    ++  +    GGL  L+   +L+     +      R+
Sbjct: 20  EGILRLARKSLERAGCRVAICGGVEAARERLANGGLDLLVLDYQLNGPETGLDFFRRLRA 79

Query: 390 DRTCIA------ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
           +   I        +     I+  R     +     +  +  PE + +   +         
Sbjct: 80  EGVRIPAILVTGFTDESRVIEALRAGVSDVVPKSGDYLDYLPEAVERVLSQVRLQRASDE 139

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
              +    +   ++ E     +   +  G     ++      G P        +   +  
Sbjct: 140 ALLLRDRELHYRTLSETLPHLVVTCDAAGDCDFLSKQWYDYTGLPEHGSHGLAWLDAVHP 199

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMH 559
           +    +     + ++                + +     + +  +  +      +  +  
Sbjct: 200 DDREQIRQSWLKAVASR-DGDYRHEMRIRRHDGEYRWFDMRVVAVRDAEGKVSKWFGSCT 258

Query: 560 DIS-------EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
           DI        E ++       A++ AE+ +  K  FLA +SHE+RTPLT ++  + V++ 
Sbjct: 259 DIHPQREAIEERERLLQSEQAARQAAEEANRAKDRFLAMLSHELRTPLTPVLAGASVLE- 317

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
               P    +       I R+  L   +++DLLD++++ +GK+ L  E V + E +   +
Sbjct: 318 --MIPELPEQARASVRMIRRNVELEARLIDDLLDLTRVANGKLRLSLETVDVHEVIDSVL 375

Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
            L +     K+  +          +LAD   ++Q+  N++ NA  FTP GG I + T   
Sbjct: 376 ELFRSEIQVKQQDVHVDKRATHHYVLADRARLQQMLWNLIRNAAKFTPDGGHIYVRTR-D 434

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
              +V + V DTG+G+   ++ K    F Q   S   +  G GLGL + KA+ D + G  
Sbjct: 435 ERMQVQISVEDTGIGIEPEQIGKLFNAFEQGDQSMTRQFGGLGLGLAITKALTDVHGGTV 494

Query: 793 YIFS-TPAKGTLIEIIFP 809
              S  P  G    I  P
Sbjct: 495 TAQSPGPHCGATFTITLP 512



 Score = 51.2 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 30/312 (9%), Positives = 81/312 (25%), Gaps = 22/312 (7%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP--NNHIGDLLKRQNTWYGKT 147
           DA G    +S++     G       G+   D       +    + +  +  R   +  + 
Sbjct: 165 DAAGDCDFLSKQWYDYTGLPEHGSHGLAWLDAVHPDDREQIRQSWLKAVASRDGDYRHEM 224

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP-RALGKRLDKKFSH 206
            +   +G   Y   D+  + +     + S  + FG         +      + L  + + 
Sbjct: 225 RIRRHDGE--YRWFDMRVVAVRDAEGKVS--KWFGSCTDIHPQREAIEERERLLQSEQAA 280

Query: 207 LHEIKKGHSSVEKE-KYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
               ++ + + ++         ++P   +     V  +      +           +  E
Sbjct: 281 RQAAEEANRAKDRFLAMLSHELRTPLTPVLAGASVLEMIPELPEQARASVRMIRRNVELE 340

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY-FDEGENLTPE 324
              + +  D   +   +         +        E               D+       
Sbjct: 341 ARLIDDLLDLTRVANGKLRLSLETVDVHEVIDSVLELFRSEIQVKQQDVHVDKRATHHYV 400

Query: 325 TVDKCPIPFFVYS----------HGNLFYANPSFLLLTKYKSVDDIE---IAGGLSTLLD 371
             D+  +   +++           G   Y       +    SV+D         +  L +
Sbjct: 401 LADRARLQQMLWNLIRNAAKFTPDGGHIYVRTRDERMQVQISVEDTGIGIEPEQIGKLFN 460

Query: 372 APKLSDNNAIKP 383
           A +  D +  + 
Sbjct: 461 AFEQGDQSMTRQ 472


>gi|256425249|ref|YP_003125902.1| multi-sensor hybrid histidine kinase [Chitinophaga pinensis DSM
           2588]
 gi|256040157|gb|ACU63701.1| multi-sensor hybrid histidine kinase [Chitinophaga pinensis DSM
           2588]
          Length = 673

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 81/368 (22%), Positives = 164/368 (44%), Gaps = 13/368 (3%)

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP--SVMNHYLT 514
           +L+ ++ G+ + +    ++  N    +  G     I    +T  +   +     +  +  
Sbjct: 33  LLQNSNAGVLVTDGNHRVIWVNSVFEQNAGQEAMHIFGMSYTAIIRYFSRMVEHVEDFEQ 92

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIII-KKLPFSSCYSLTMHDISEWKQEKNKLSH 573
           ++  L L++          ++ ++  +      +          + D+S  K  +++L  
Sbjct: 93  KMRDLRLKKKPYFGWEIILRDGRIYEVSYNPLIEKRRFMGSVWQIVDVSRHKMPRSQLDL 152

Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
           A++ AE+    + +FLA +SHEIRTPL  I+G + +++        +P+  +Y N +  S
Sbjct: 153 ARRQAEEARGAQKEFLASMSHEIRTPLNVIVGMTHLLEETNL----DPKQRDYINILKHS 208

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693
             +++ +++D+LD+SKIE+G++ ++    +L E V       +L   ++ + I  S    
Sbjct: 209 SGILMGLISDILDLSKIEAGELQVNQREFNLTELVQSLRHTFELKIGQRPVSISASIDPQ 268

Query: 694 I-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH----TSNEEVILRVRDTGVGM 748
           +   ++ D   + QI +N+L NA  FT  G +I I+            V  +V DTG+G+
Sbjct: 269 LKTWLVGDDMLLNQILMNLLGNAEKFTREG-EIAINVQLDSWQEDKCWVTFQVCDTGIGI 327

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
              +LE   + + Q     +    GTGLGL ++K +V+   G   +       T      
Sbjct: 328 QKDKLELIFQNYKQAEQEIRENYGGTGLGLAISKQLVELQGGSIVVEEADGFSTCFSFTL 387

Query: 809 PLYDTSHP 816
           P  DT  P
Sbjct: 388 PFIDTRKP 395


>gi|154251880|ref|YP_001412704.1| integral membrane sensor signal transduction histidine kinase
           [Parvibaculum lavamentivorans DS-1]
 gi|154155830|gb|ABS63047.1| integral membrane sensor signal transduction histidine kinase
           [Parvibaculum lavamentivorans DS-1]
          Length = 717

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 97/251 (38%), Positives = 156/251 (62%), Gaps = 1/251 (0%)

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           ++ + +Q  N L  A+ +AE  ++ KS FLA +SHE+RTPL AIIGFSEV+  + FGP+ 
Sbjct: 454 EVRKREQTANDLRDARDVAELANASKSQFLANMSHELRTPLNAIIGFSEVMNGELFGPIE 513

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
           N RY +Y   I +S + +L ++ND+LD+SKIE+ +  L+ E + + + V+    +++  A
Sbjct: 514 NERYKDYVGDIHKSSSHLLSLINDILDLSKIEADRYELYEEELDVMDVVASCERMMRHRA 573

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
           +E  + ++ +  + +P ++AD R+++QI LN++SNA+ FTP GG I +      +  +  
Sbjct: 574 DEAGVALKVTVEDELPLLMADKRALRQIVLNLVSNAVKFTPKGGLIQLGAFMEPDGRMAF 633

Query: 740 RVRDTGVGMTNYELEKAMKPFGQ-IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           RV DTGVGM+  ++  A++PF Q   +S     EGTGLGLPL +A+   +     I S P
Sbjct: 634 RVADTGVGMSKKDIPIALEPFRQIGKDSNVYSTEGTGLGLPLTRALARLHGASLVIESEP 693

Query: 799 AKGTLIEIIFP 809
            +GT I I  P
Sbjct: 694 GEGTTITIRMP 704


>gi|254249290|ref|ZP_04942610.1| Hypothetical protein BCPG_04150 [Burkholderia cenocepacia PC184]
 gi|124875791|gb|EAY65781.1| Hypothetical protein BCPG_04150 [Burkholderia cenocepacia PC184]
          Length = 1044

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 113/667 (16%), Positives = 221/667 (33%), Gaps = 50/667 (7%)

Query: 184 VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL 243
           +    +  +  A   RL+ K S         + +         ++       +  +V + 
Sbjct: 141 LTDPALVAELDAGHGRLELKGSDRIPSMLVLADLSPATPASSYERDLAMASDLTYRVGAY 200

Query: 244 TEYYAHKDDVLKTEKYPLLTSE--ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301
              +  +  V      P         +                  Q    L+  +   F 
Sbjct: 201 LANHDAERAVAGYVYRPDRRFALVIPAPAAGSPTAGATGASALLAQVAAGLEPPAAGRFT 260

Query: 302 YLSHRNHPSLSA-------YFDEGENLTPETVDKCPIPFFVYSHGNLFYAN--------- 345
           +L+    P               G       V   P+          +  N         
Sbjct: 261 WLAPAYDPVQRRDVFRLVGAAYAGGQPFEVLVSTLPVDVLRTRLTTEYATNGAIIADAQG 320

Query: 346 ----PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401
                +   ++   ++  ++                  A     L +          +  
Sbjct: 321 NALLRTGAAVSDAATLATLKRVAAGPRAAAGSGPRSTYAGGLFALSQPIPDTDWTIVQAF 380

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV---DTRINKRKMEIEVMQLCSIL 458
           T++                       +    +  +           R++        +I+
Sbjct: 381 TLRSLVAAVGLQAGWYVAVMVAALVLVWALLVLFDRRVLIPDDARTRRVVESENLNRTIV 440

Query: 459 EATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
           EA   GIA+++  +G +L  N  +                       + +       +  
Sbjct: 441 EAAPSGIALLSLADGAVLLQNDTMRAY------------DARIAAAPSLAARLLARFDAS 488

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKK--LPFSSCYSLTMHDISEWKQEKNKLSHAK 575
                   +      T  ++ + L + + +     +        DI+  K  + KL  A 
Sbjct: 489 PGASAWQSDLHVTLPTGGDETVDLLVNLVRTRYRDADVVLCNFSDITSQKNIERKLDEAL 548

Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
           + A+  +  KS FLA +SHEIRTPL AI+G  E+I  +           E    ++ + +
Sbjct: 549 RAADAANDAKSAFLATMSHEIRTPLNAILGNLELIGREPLA----DTQRERLQTVEGASS 604

Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695
           ++L++++D+LD+SKIE+G+M +   P  L EA+ +  ++ +  A  K +       + + 
Sbjct: 605 VLLNLISDILDLSKIEAGQMTIEAIPFDLAEAIEQTGAMFEPLATAKGLQYDVIVDDALA 664

Query: 696 -RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTN 750
            R + D   ++QIA N++ NAI FT  G  + +      + +    V++ V DTG+GMT+
Sbjct: 665 SRYVGDPVRIRQIAANLVGNAIKFTDRG-DVTLEVYLRDDADPASPVVIGVSDTGIGMTD 723

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            +     +PF Q   S   R  GTGLGL L K +     G   + S P +G+   +  PL
Sbjct: 724 AQRAALFRPFTQADTSITRRYGGTGLGLALTKHLTQMMDGAIDVKSAPGEGSTFVVTLPL 783

Query: 811 YDTSHPH 817
              +   
Sbjct: 784 RAATDAE 790


>gi|37675668|ref|NP_936064.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
 gi|37200207|dbj|BAC96034.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
          Length = 646

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 78/254 (30%), Positives = 126/254 (49%), Gaps = 10/254 (3%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I   +    +L  AK+ AE  +  KS+FLA +SHEIRTP+  IIG + ++K         
Sbjct: 221 IERLRSNYAELKSAKEQAEVANVKKSEFLATMSHEIRTPMNGIIGVASLLKEMDLSS--- 277

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
               +Y   I+ S   +LDI+ND+LD SKIE+GKM +  EP  L + V +  ++  L A+
Sbjct: 278 -EQKQYVEMINHSSESLLDIINDILDFSKIEAGKMAISLEPFCLSDLVEQMCAIYTLKAH 336

Query: 681 EKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---- 735
            K +      A ++P  +  D + +KQ+  N+L NA+ FT  G  + +      +     
Sbjct: 337 AKNLQFVVELAEDVPHTMSGDSKHLKQVLNNLLGNAVKFTERG-YVKLVVAKELDAQHIP 395

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            +  +V D+G+G+   + E   + F Q   S   +  GTGLGL + + +V    G+  + 
Sbjct: 396 HIRFQVFDSGIGIAKEKQELVFERFQQADGSTTRKYGGTGLGLAICRRLVSLMGGELELK 455

Query: 796 STPAKGTLIEIIFP 809
           S    G+  E   P
Sbjct: 456 SEVGLGSCFEFSVP 469


>gi|300023375|ref|YP_003755986.1| integral membrane sensor signal transduction histidine kinase
           [Hyphomicrobium denitrificans ATCC 51888]
 gi|299525196|gb|ADJ23665.1| integral membrane sensor signal transduction histidine kinase
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 553

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 101/249 (40%), Positives = 159/249 (63%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           ISE ++       A++ AE  +  KS FLA +SHE+RTPL AI+GFSEV++ +  GP+G+
Sbjct: 255 ISELEEASAISDEARRRAEAANKAKSRFLATMSHELRTPLNAIMGFSEVMEKEILGPIGS 314

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
             Y EYA+ I  SGN +L I+N++LD+S+IE+G+ +LH E V L +   +   L+++ A+
Sbjct: 315 DTYREYAHNIYESGNHLLCIINEILDLSRIEAGRYDLHEETVRLTDIAEDCRRLIKIKAD 374

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
            K + I   FA ++P + AD R+++QI LN+LSNA+ FTP GG+I+I+  HTS+    + 
Sbjct: 375 AKTLHIVEDFAPDLPHVWADPRAMRQICLNLLSNALKFTPRGGRIVITVGHTSDGGQFVT 434

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           + DTG G+   E+ + ++ FGQ   + Q    GTGLGLP+ + ++  + G F + S   K
Sbjct: 435 ISDTGPGIPKDEIPRVLQAFGQGSLAHQTAEGGTGLGLPIVQNLISLHGGTFDLQSELRK 494

Query: 801 GTLIEIIFP 809
           GT + +  P
Sbjct: 495 GTEVTVTLP 503


>gi|260900170|ref|ZP_05908565.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037]
 gi|308110109|gb|EFO47649.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037]
          Length = 632

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 73/260 (28%), Positives = 129/260 (49%), Gaps = 8/260 (3%)

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
             + + ++ + +L   +  AE  +  KS+FLA +SHEIRTP+  IIG + ++ + +    
Sbjct: 218 RSVQKVREHQAELEAERDKAEVANRKKSEFLATMSHEIRTPMNGIIGVASLLSDTKL--- 274

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
            +P+  E+   ID S   ++ I++D+LD SK+E+GK+ L  E     + + + ISL  + 
Sbjct: 275 -DPQQKEFVEIIDNSSQSLMTIIDDILDFSKVEAGKVELASETYHFRQLLDDVISLHTVK 333

Query: 679 ANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQ---IIISTTHTSN 734
           A +K + + +     +P  +  D   +KQ+  N+LSNA+ FT  G     + +   +   
Sbjct: 334 AQQKNLQLLSDIDPKLPAEVQGDEGRLKQVLNNLLSNAVKFTERGHVKLLVSLHEQNNDI 393

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
            +V  RV D+G+G+     +   + F Q   S   +  GTGLGL +   +V    G   +
Sbjct: 394 AQVRFRVVDSGIGIAKEHQQAVFERFQQADGSTTRKYGGTGLGLAICAQLVHIMGGDIKL 453

Query: 795 FSTPAKGTLIEIIFPLYDTS 814
            S    G+  +   PL   S
Sbjct: 454 TSELGLGSCFDFTIPLTVVS 473


>gi|218531281|ref|YP_002422097.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium
           chloromethanicum CM4]
 gi|218523584|gb|ACK84169.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium
           chloromethanicum CM4]
          Length = 942

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 101/785 (12%), Positives = 230/785 (29%), Gaps = 81/785 (10%)

Query: 75  VFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG 134
           V D   + +   W       +   ++     + +     +G    DV   +  D    + 
Sbjct: 47  VIDGSAQPMFIVW---GAQRILLYNQPYAAILADKHPAALGRDFLDVWSEVAQDRTPLVK 103

Query: 135 DLLKRQN-TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193
                +       T L    G +       +  P+   + + +GF  F            
Sbjct: 104 RAYAGEAVQMADITLLMHRNGASEEAHFSFSYTPVRGEDGQIAGF--FCACLETTPQVLA 161

Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKD 251
               + +  +      I+          + +         +    +++    T       
Sbjct: 162 ERQRQVVADRVRAALAIQTVGIIHWGPNFGLTEVNEAFLSMTGFSRDEAIGKTWQELTPA 221

Query: 252 D--VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
           +      +    + +   ++P ++ ++  + +++        +++        L      
Sbjct: 222 EFWPASEQAVEQVLTVGEAVPYEKQYYRQDGSRWWGLFAPRKVED--GVIEFVLDVTERK 279

Query: 310 SLSAYFDEGENLTPETVDKCPI-PFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLS 367
                  E E      +D               +   +P       Y++ + +  +G L 
Sbjct: 280 EAEERLREREQRLQLILDSATDYAILTLDPERRVTSWSPGAARTFGYEAEEILGKSGDL- 338

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA-MTFIPFEKANQFPE 426
            L            +     R +             + +        +       +    
Sbjct: 339 -LFTPEDRQAGVPEEEAATARQNGHAPDVRWHQ---RKDGGRVFVSGSNNVLRDPSGTEI 394

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA----IINREGIILSTNRAVS 482
              +   +  +      + +   E  +L S  +AT+D I       +     +  N AV 
Sbjct: 395 GFLKVARDETERRRAEEEVRETEERYRLAS--QATNDAIWDWKLATDH----IRWNEAVE 448

Query: 483 KLFGYPVEDIL--RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
            LFGY  E++      +   +  +  + +   +T  +      T         ++     
Sbjct: 449 TLFGYRGEEVEPSGAWWKAKIHHDDRARVVAGITAAIE-GESDTWTTEYRFERRDGTYAD 507

Query: 541 LRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKK-------------------- 576
           +      L             MHD++  K+ +  L    +                    
Sbjct: 508 ILDRGTVLRDRCGRAVRMVGAMHDLTPHKKAEAMLRQLNETLEHRVVQEVASRLKTEDAL 567

Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
              ++          V+H+    LT I G ++++       L   R   YA  I  + + 
Sbjct: 568 RQSQKLEAIGQLTGGVAHDFNNLLTVIRGAAQML---CRPTLSEERRQRYAEAISETADR 624

Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696
              + + LL  S+ ++    L  E  ++ + V     +++      R+ + T+    I  
Sbjct: 625 AAKLTSQLLAFSRRQA----LKPEVFNVGQRVEVIADMLRTVV-GSRVELTTNTECEICY 679

Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT------------SNEEVILRVRDT 744
           + AD    +   +N+  NA       GQ+ ++   T              E V + V DT
Sbjct: 680 VEADPSQFETALVNMAVNARDAMDGVGQLAVTIEPTKAVPGIRGHKAAEGEFVAVYVTDT 739

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G G+ + +L +  +PF          G+GTGLGL         + G+  + ST  +GT  
Sbjct: 740 GTGIPSEKLAQIFEPFFTTK----EVGKGTGLGLSQVYGFAKQSGGEVGVESTVGEGTTF 795

Query: 805 EIIFP 809
           ++  P
Sbjct: 796 KVYLP 800


>gi|312211920|emb|CBX92004.1| hypothetical protein [Leptosphaeria maculans]
          Length = 934

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 133/767 (17%), Positives = 244/767 (31%), Gaps = 93/767 (12%)

Query: 89  IDAHGYLKEISEELPKTIGN--------YAFKMIGMRLCDVS--DILHIDP-----NNHI 133
           +D  G +  +++   + I              +IG  + D+S   +  + P     N+ +
Sbjct: 22  LDHAGTVIAVNDGSLRLISPLRQNAAHVTESALIGKNIADISLFPLPGVSPVFWTWNDIL 81

Query: 134 GDLLKRQ----NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRV 189
              +       + W       P  GT             Y  +  F              
Sbjct: 82  AAAVDAGKVIDDAWQEDDRQTPRIGTVE----------AYQDSENFWD--------EEAE 123

Query: 190 DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH 249
                     + +      E        E       +     P     + +         
Sbjct: 124 RQAIIETYVYVPRYAGGTVEATAKDEPSEPSVIRARATIRWYPSQDNGSHLI-------- 175

Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
              VL     P  T+  S    +   H       T           S     Y       
Sbjct: 176 ---VLHRTTLPYGTAPTSPAAVKAAQHNFQNLVITPPSSTTPTGQRSSSHTPYFGL--DL 230

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
           S     D    + P  V          + G     + S+ L +       +   G +S +
Sbjct: 231 SEPDTTDIASAIIPHIVATL------DTDGKAIKLSRSWYLFSGMTEEQSL-GDGWISAM 283

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
                  D   +        +      + +    +                 +   + + 
Sbjct: 284 HAE----DVTEMTKAWANVVEHGLSHWTHQARYRRAVDGTYCWFLIRAEPHRDGSGKILR 339

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR-------EGIILS-TNRAV 481
                 +  +  + + K +I    + ++   T   +  I++       EG +    NR V
Sbjct: 340 WYASMMDIHEWVVARLKADIRRQSIITLFAQTDVMLWGIDKSNQMYICEGRLKWDPNRVV 399

Query: 482 SKLFGYPVEDILRKPFTVF--LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
             +     E    +  +    +      +++     +        +E          + +
Sbjct: 400 KLMESALREQQASRDDSTENTVRNADQELVHTIQRVLKGRGFSPVVEHWEDDRYFRTRFV 459

Query: 540 SLRIIIK------KLPFSSCYSLTMHDISEWKQE------KNKLSHAKKIAEKESSHKSD 587
           +  +                      DI+E K          +L   +K A   S+ KS 
Sbjct: 460 AEHVPPGIDASTTSEDVVQAALALTFDITEEKARSILLTENKQLIAKEKAALDASNLKSR 519

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           FLA +SHEIRTP++ IIG SE + +       N   +E++N I+ S   +L +VND+LD 
Sbjct: 520 FLANMSHEIRTPISGIIGLSEHLSDCGL----NEEQLEFSNSIEESAKFLLTLVNDVLDF 575

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQ 706
           SK+ESG M++   P S  + +S+ +  ++L A E+ + +            L D   ++Q
Sbjct: 576 SKMESGHMDVESIPFSPLKIISDTLIPLRLQAKERGLALTFDCKLEPGAMFLGDPWRLRQ 635

Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQ 762
           I  N++ N++ FT  G QI +S      ++    +   V DTG+G+T   L+    PF Q
Sbjct: 636 ILTNLIGNSLKFTQQG-QIDLSVRSADLKDSTMVLHFAVHDTGMGITEEVLDGLFTPFSQ 694

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
              S      GTGLGL + K +V+   G+  + ST  +GT      P
Sbjct: 695 ADGSTARLYGGTGLGLAICKQLVELMGGQISLASTWGQGTTATCKIP 741


>gi|296161585|ref|ZP_06844390.1| multi-sensor hybrid histidine kinase [Burkholderia sp. Ch1-1]
 gi|295888229|gb|EFG68042.1| multi-sensor hybrid histidine kinase [Burkholderia sp. Ch1-1]
          Length = 1490

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 123/651 (18%), Positives = 228/651 (35%), Gaps = 40/651 (6%)

Query: 188  RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS------ 241
            R+  D   +   LD  F  +   +           D+  +Q     L++   V       
Sbjct: 428  RIPADHIVVAPSLDDAFEMVAAGEADVLVGNVAAIDVLLKQRYDGVLKILGTVGESDALD 487

Query: 242  -SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF 300
             ++         ++      +  +E+  + ++    +   +          L        
Sbjct: 488  FAVRADLMPLAGLIDRALLAMPPAEKQRIRQKWVTGSAPESGIWSVTAVRLLPLLIGIGV 547

Query: 301  EYL-----------SHRNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSF 348
              L             R         +   N     +   P P   +   G     N ++
Sbjct: 548  ALLITLRAYLLLQREVRLRKKTELELELQLNFQETMMKMVPYPLVAMDLDGRYIAVNEAY 607

Query: 349  LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
                       I    G +T+        N+ I   M          A   L   +    
Sbjct: 608  EQACGMSREAVI----GRNTMDVQTWGEANSRILTDMTREMLNGRETAQLELQFERGAGN 663

Query: 409  NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468
                + F          + +   G   +  D R  + +      +L  +  +    +  +
Sbjct: 664  VRHGL-FWASVCRGSDGQPVCVLGTVVDITDIRRAEMRARETERRLFDVTRSLPAVVFQL 722

Query: 469  NR--EGIIL--STNRAVSKLFGYPVEDILRKPFTVF--LEQNTPSVMNHYLTEILSLDLR 522
             R  +G             L G     +       F  + +   + +   L      +  
Sbjct: 723  RRTSDGAYSFPYIGGDTRHLLGGKDGSLSSSDHVDFQRVCEEDRAFVLAELERSALCETP 782

Query: 523  QTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-YSLTMHDISEWKQEKNKLSHAKKIAEKE 581
              +E    G  +E K     ++ ++ P  S  +S    D S      ++L+ A+ +AE  
Sbjct: 783  VNMEFRFEG-DQEIKWARAELVPRREPDGSVVWSGYWVDASVEHARSDELARARDLAEAA 841

Query: 582  SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
            +  K DF A +SHEIRTP+  ++G  EV++        N    E    I  S   +L I+
Sbjct: 842  ARAKDDFFAMMSHEIRTPMNGVLGLVEVLERTPL----NTDQGEMLGMIHESAGALLQIL 897

Query: 642  NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILAD 700
            +DLLD SKIE+G++ +  E + + E V  A+ L+   A+EK + +R   A ++   +  D
Sbjct: 898  DDLLDYSKIEAGRLTIEAESIDIRELVDNAVGLLAGRAHEKGLKVRVDIAPDVAAALRGD 957

Query: 701  LRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757
               ++QI  N+L NAI FTP G    ++ +       + + + V DTG+G+      +  
Sbjct: 958  SVRLRQILFNLLGNAIKFTPQGEVDVRVSVFAEADDVQTLEMTVEDTGIGIAPEVQNRLF 1017

Query: 758  KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            +PF Q  +S   R  GTGLGL + + ++D   G   + S P +GT + +  
Sbjct: 1018 EPFVQAESSTTRRFGGTGLGLTICRKLIDLMGGSLALHSEPGRGTRMIVQL 1068



 Score = 55.4 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/389 (8%), Positives = 92/389 (23%), Gaps = 36/389 (9%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN---NHIGDLLKRQNTWYG 145
           +D  G    ++E   +  G     +IG    DV      +     +   ++L  + T   
Sbjct: 594 MDLDGRYIAVNEAYEQACGMSREAVIGRNTMDVQTWGEANSRILTDMTREMLNGRETAQL 653

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +       G   +     +       + +     G   V             +  +++  
Sbjct: 654 ELQFERGAGNVRHGLFWASVC--RGSDGQPVCVLG--TVVDITDIRRAEMRARETERRLF 709

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD---------DVLKT 256
            +           +   D      P      ++ +       +  D         +    
Sbjct: 710 DVTRSLPAVVFQLRRTSDGAY-SFPYIGGDTRHLLGGKDGSLSSSDHVDFQRVCEEDRAF 768

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
               L  S     P   +F      +    +     +     S  +  +    S+     
Sbjct: 769 VLAELERSALCETPVNMEFRFEGDQEIKWARAELVPRREPDGSVVWSGYWVDASVEHARS 828

Query: 317 EGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
           +      +  +                A   F  +  ++    +    GL  +L+   L+
Sbjct: 829 DELARARDLAEAAA------------RAKDDFFAMMSHEIRTPMNGVLGLVEVLERTPLN 876

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
            +      M++ S    +     L          L +     +        +        
Sbjct: 877 TDQGEMLGMIHESAGALLQILDDLLDYSKIEAGRLTIEAESIDIRELVDNAVGLLAGRAH 936

Query: 437 DVDTRIN-------KRKMEIEVMQLCSIL 458
           +   ++           +  + ++L  IL
Sbjct: 937 EKGLKVRVDIAPDVAAALRGDSVRLRQIL 965


>gi|170697003|ref|ZP_02888099.1| histidine kinase [Burkholderia ambifaria IOP40-10]
 gi|170138177|gb|EDT06409.1| histidine kinase [Burkholderia ambifaria IOP40-10]
          Length = 1026

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 119/623 (19%), Positives = 215/623 (34%), Gaps = 38/623 (6%)

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
              L  +       +          +    +   + +           DV    +     
Sbjct: 153 PIELTGVLPPPQPADPGGTSYLIDPNGDFIVTAGHPLVKRALALPGGFDVRALVEQLRPM 212

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
           + ++S+               ++++   L  +     +++   N   +  +         
Sbjct: 213 TNDTSISMAPVARQ--NTIALERRFDPVLGRSVLRMVQWVLGANGRPVVWFVINSPPPIE 270

Query: 324 ETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
             + + P        G  +    S   L   +  D   +A  L                 
Sbjct: 271 GIL-RSPGA------GREYALVDSSGNLLLGRQPDSTMVARALEHARHDDGERAAARRVG 323

Query: 384 VMLYRSDRTCIAASARLHTIQWNR---ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
           +    SDR   +    + TI W     + +L  +                          
Sbjct: 324 INFVVSDRVPRSDEVVMATISWRAVLSDVALRASLTVAPALFAIALLWIAIVKFDRRALR 383

Query: 441 RINKRKME--IEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPF 497
             N+R +          +++     G+ +++  +G  +  N A   L  Y  +D   +P 
Sbjct: 384 PANRRAIRLIESEALNRTLIRTAPAGLVLLSFADGETIMRNDA---LLAYE-QDASGEPL 439

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYS 555
                     +   Y       + R  + +             L   I +  +       
Sbjct: 440 GK-------RLWRAYRDGAPPGNARTRVTRELAVERAGYGTAYLDAHIVRTRYRGIDVLL 492

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
            T+ DI+  KQ + KL  A++ AE  +  KS FLA +SHEIRTPL AIIG  E+++  + 
Sbjct: 493 CTLLDITTRKQAEEKLREAREAAEFANKAKSTFLATMSHEIRTPLNAIIGNLELMERAQM 552

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
                         I  S + +L ++ND+LD+SK ES +M L   P  L   V+E  ++ 
Sbjct: 553 AAP----LRRRLGTIMSSSDALLRVINDVLDLSKAESNQMALESIPFDLRRVVNEVAAIF 608

Query: 676 QLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
           +  A+ K +++    A ++    + D   ++Q+  N++SNAI FT  GG + I       
Sbjct: 609 RPLADAKSLVLTCRIAPDLANGYVGDATRLRQLVSNLVSNAIKFTKRGG-VTIDVRLAKA 667

Query: 735 E----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
                 V + V DTG+G+    L      + Q   S   R  GTGLGLPL + +V    G
Sbjct: 668 GPAGRCVEIAVSDTGIGIPEDGLPTLFDVYVQTDASIYRRFGGTGLGLPLCRRIVTLMGG 727

Query: 791 KFYIFSTPAKGTLIEIIFPLYDT 813
              + S   +GT+     PL + 
Sbjct: 728 ALNVDSRLGEGTIFVAALPLPEA 750


>gi|330505537|ref|YP_004382406.1| multi-sensor signal transduction histidine kinase [Pseudomonas
           mendocina NK-01]
 gi|328919823|gb|AEB60654.1| multi-sensor signal transduction histidine kinase [Pseudomonas
           mendocina NK-01]
          Length = 640

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 99/626 (15%), Positives = 208/626 (33%), Gaps = 58/626 (9%)

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
              + F     +    ++ E               +    + +   +             
Sbjct: 54  AQRQWFKSRVGLDAEQTAREVAFCAHAVHADALLEVDNAQEDARFRDNPLVTSAPHIRFY 113

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
             +   +   L            +         LQ+ ++ + E    R          E 
Sbjct: 114 AGVPLHDGKGLALGTLCVIDRQPRQLDDHQRTQLQHLAQLTGELFELRLQAR---RQAEQ 170

Query: 319 ENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDD--------IEIAGGLSTL 369
             +    +D       V    G +   NP    L  Y   D         +  AG    L
Sbjct: 171 SAMHQAMLDNAGSAVLVLDPQGRVLRGNPEAQQLLDYPPDDLEGQYLSQLLLEAGQFERL 230

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
             A      +    +     +   +     L  I+   +                     
Sbjct: 231 CAASTAGPQSTEGQMRAR--NGQSLPVRLNLSPIRAEGQP-----------------LQG 271

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
              +  +       +++++    QL  ++      +   +        +  +  ++G   
Sbjct: 272 YLLVANDLSQREEARQRLQRIAAQLPGMV---YQYLLRTDGSSCFPYASAGIHDIYGCSP 328

Query: 490 EDIL--RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
           E+     +P    L  +  + +   +T   S     T ++       +  L+ +      
Sbjct: 329 EEAREDAQPVLARLHPDDAATVLSAITR--SAASLTTWQQEYRVLHPQHGLIWVEGHAAP 386

Query: 548 LPFSSC---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
              +     +   + DISE K+ +                +++F++ VSHE+RTPLTAI 
Sbjct: 387 QRLTDGDTLWHGFISDISERKRGE--------------QLQNEFVSTVSHELRTPLTAIA 432

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           G   +I     G +      +       +   +  +++DLLD+ K+ +GKM    +P+ L
Sbjct: 433 GSLGLINGGALGEVPQA-MRQMLEIAQSNSQRLRHLIDDLLDMDKLVAGKMQFDLQPLQL 491

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724
              + +A+   Q YA   ++ ++   A+   +++AD + ++Q+  N+LSNA  F+ +G  
Sbjct: 492 RPLLQQALRNNQPYAERHQVQLQL-LASADCQVMADAQRLEQVLANLLSNAAKFSAAGQT 550

Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
           + ++    +   V + VRD G G+      +    F Q       R  GTGLGL ++K +
Sbjct: 551 VELAAGL-AQGWVRISVRDYGQGIAEDFKPRIFSKFAQADAGDTRRQGGTGLGLAISKEI 609

Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPL 810
           ++   G+    ST  +G+   +  PL
Sbjct: 610 IEHMGGRIGFDSTEGQGSTFWLSLPL 635



 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/293 (12%), Positives = 74/293 (25%), Gaps = 23/293 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK--RQNTWYGK 146
           +D  G +   + E  + +      + G  L  +     +        L           +
Sbjct: 188 LDPQGRVLRGNPEAQQLLDYPPDDLEGQYLSQL-----LLEAGQFERLCAASTAGPQSTE 242

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
             +    G    +P+ L   PI +  +   G+     + V    +      +RL +  + 
Sbjct: 243 GQMRARNG--QSLPVRLNLSPIRAEGQPLQGY-----LLVANDLSQREEARQRLQRIAAQ 295

Query: 207 LHEIKKGHSSVEK-------EKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
           L  +   +                I       P    ++    L   +      + +   
Sbjct: 296 LPGMVYQYLLRTDGSSCFPYASAGIHDIYGCSPEEAREDAQPVLARLHPDDAATVLSAIT 355

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
               S  +   E    H    +     +     Q  +     +    +  S     ++ +
Sbjct: 356 RSAASLTTWQQEYRVLH--PQHGLIWVEGHAAPQRLTDGDTLWHGFISDISERKRGEQLQ 413

Query: 320 NLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
           N    TV            G+L   N   L          +EIA   S  L  
Sbjct: 414 NEFVSTVSHELRTPLTAIAGSLGLINGGALGEVPQAMRQMLEIAQSNSQRLRH 466


>gi|225568541|ref|ZP_03777566.1| hypothetical protein CLOHYLEM_04618 [Clostridium hylemonae DSM
           15053]
 gi|225162769|gb|EEG75388.1| hypothetical protein CLOHYLEM_04618 [Clostridium hylemonae DSM
           15053]
          Length = 885

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 96/376 (25%), Positives = 164/376 (43%), Gaps = 13/376 (3%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILRKPFTV 499
              ++++         +  +  D   I + + G I+     + ++ G P   +  +    
Sbjct: 227 HRQRKELVYRSKLFDCLSLSIDDAFIIRDADTGAIIYRGLNLERILGIP--MVDMESLYQ 284

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH 559
            L++    +       + S    + L        KE++ + +RI   +   +        
Sbjct: 285 GLKEEDARIFKEDYNAVQSASPYEKL-VEYTRPDKEKRWMLVRIYRVEDMNAPQLITVFS 343

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           D +E    +  L  A   AE  ++ KS+FL+R+SHEIRTPL A+IG + +       P  
Sbjct: 344 DRTEEVCSRQALQEAMLAAENANAAKSEFLSRMSHEIRTPLNAVIGMTTIAAASVSDP-- 401

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
             R  +    I  S   +L ++ND+LD+SKIES KM L  EP  + E V+  +S V   A
Sbjct: 402 -ARVEDCLTKITFSSRHLLMLINDVLDMSKIESSKMALQNEPFDIFEIVNGFVSTVYAQA 460

Query: 680 NEKRILIRTSFAN--NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE- 736
             K I+   +          + D   + QI +N+ SNA+ FTP GG I +  +       
Sbjct: 461 KSKDIVFEETMEGFGKDTVFIGDSLRLNQILMNLSSNAVKFTPPGGSIHLDVSRYKKGNQ 520

Query: 737 ---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
              +   ++DTG+GMT   + +  +PF Q   S   R  GTGLG+ + + ++    G+  
Sbjct: 521 ADVIRFVLKDTGIGMTKEAVGRIFQPFEQADASIAKRYGGTGLGMSITRNLITLMGGQIQ 580

Query: 794 IFSTPAKGTLIEIIFP 809
           + S P  GT   +  P
Sbjct: 581 VESEPGLGTAFIVDLP 596


>gi|332702027|ref|ZP_08422115.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332552176|gb|EGJ49220.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 604

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 82/363 (22%), Positives = 158/363 (43%), Gaps = 25/363 (6%)

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
           +  QL +IL+   +G+ +++ +G I + NRA++ +F        + P    ++       
Sbjct: 253 QKQQLVAILDNMKEGVMLLSADGRIQAVNRAMTLIFPGIEHCQGKTPLEAIMDPVLHQEC 312

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN 569
              L    +      L +   G   +  ++ L+             +  HDIS  K  + 
Sbjct: 313 ERALENRETGAPVSLLLEPRSGVFYDVGIVPLKES----GSGLGAVVVFHDISRLKHLE- 367

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
                          + DF+A VSHE+RTPLT+I G++E +++    P  +P+   + + 
Sbjct: 368 -------------RVRRDFVANVSHELRTPLTSIKGYAETLQSD---PAASPQAKGFLDI 411

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I ++ N +  I+ DLL++S++E+ +      PV    AV  A    +     + + +   
Sbjct: 412 IVKNANHMTKILGDLLNLSRLEADRQAFELAPVDAQAAVMSAYRECESLGRGRGVGLVCR 471

Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749
                  +LAD   + Q+  N++ NA+ ++P  G + +    T + EV+  V D G G+ 
Sbjct: 472 IPEKAVFVLADYDRLVQVFRNLIENALRYSPEHGSVTV-FHQTGDGEVLFGVSDRGPGIP 530

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS---TPAKGTLIEI 806
             E  K  + F ++   +   G  +GLGL +AK +V+ + G+ ++ S       G     
Sbjct: 531 RDEQAKIFERFYRVEKHRLKMGGSSGLGLAIAKHIVERHGGRIWVVSPATGEDTGATFYF 590

Query: 807 IFP 809
             P
Sbjct: 591 NMP 593


>gi|323212345|gb|EFZ97168.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
          Length = 646

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 98/425 (23%), Positives = 171/425 (40%), Gaps = 35/425 (8%)

Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
                L  I+      L +  I                 E        +  +   E  Q 
Sbjct: 2   PVDLVLERIR-----ILILNAILLNVLVGAGLFTLARMYERRIFIPAESDAQRLEEHEQF 56

Query: 455 -CSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
              I+ +   GI I+   +G+ + +N            +  ++                 
Sbjct: 57  NRKIVASAPVGICILRTIDGVNILSNELAHTYLNMLTHEDRQR----------------- 99

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572
           LT+I+       ++      T     L +  +  +    +     + D+S   + +  L 
Sbjct: 100 LTQIICGQQVNFVD----VLTSNNTNLQISFVHSRYRNENVAICVLVDVSTRVKMEESLQ 155

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
              + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R       ++ 
Sbjct: 156 EMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR---LVTAMNN 211

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
           S +L+L I++D+LD SKIES ++ +     S  E ++   +        K++ +      
Sbjct: 212 SSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFIEP 271

Query: 693 NIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751
           ++P  +  D   ++Q+  N+LSNAI FT  G  I++       + + +RVRDTGVG+   
Sbjct: 272 DVPVSLNGDPMRLQQVISNLLSNAIKFTDIG-CIVLHVRC-DGDYLSIRVRDTGVGIPAK 329

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
           E+ +   PF Q+    Q   +GTGLGL + + ++    G   + S P  G+   +  PLY
Sbjct: 330 EVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTLRIPLY 389

Query: 812 DTSHP 816
              +P
Sbjct: 390 GAQYP 394


>gi|162451219|ref|YP_001613586.1| phosphate sensory box histidine kinase PhoR [Sorangium cellulosum
           'So ce 56']
 gi|161161801|emb|CAN93106.1| phosphate sensory box histidine kinase PhoR [Sorangium cellulosum
           'So ce 56']
          Length = 498

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 94/482 (19%), Positives = 183/482 (37%), Gaps = 40/482 (8%)

Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
                +   + +      +   L   + +    +  V++         A      I+   
Sbjct: 32  AARDMEAALLAEHSPRAAVDAALLRSRRTLLLGMGAVIVVAVSVGAATAFFVARPIRGLT 91

Query: 408 ENSLAMT----FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
             + AM+                      +     +   +  ++  E   L  IL+  S+
Sbjct: 92  RFAQAMSEGDLSTRAPLRGSGELRQLARALNHLTSELSRSTAEVRTERALLAGILDGMSE 151

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
           G+ +++R+G IL  NRA+  +     + + R              +         +D+  
Sbjct: 152 GVLVLDRDGRILLANRALRAMASLGEDALGRSVIESIRNARLTEAIQLAGKRDEPVDVEV 211

Query: 524 TLEK----------------ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQE 567
            L +                  LG  + E L +                  HD+++ ++ 
Sbjct: 212 DLGRTLPRRLLVRVSRRKGPERLGHDEREALAAWGADHDGASAEPGLIAVFHDVTDLRRL 271

Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP-RYIEY 626
           +                ++DF+A VSHE+RTP+TAI   +E ++    G L +P    E+
Sbjct: 272 ET--------------IRTDFVANVSHELRTPVTAISTAAETLQ---LGALKDPHEAAEF 314

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
            + IDR    +  +V+DLLD+SKIE+    L    + +  A+     L+   A  +R+ +
Sbjct: 315 VDVIDRHAKRLRHLVDDLLDLSKIEAKNFRLALSELDIAPAIEHVTQLLAEAARRRRVTL 374

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
               A+ +P +  D R+++Q+ +N+L NAI +   G  + +        +V L V D G 
Sbjct: 375 TVD-ASALPPVRCDRRALEQVLMNLLDNAIKYAGEGAHVTVRARSVDQ-QVTLAVADDGP 432

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+  + L +  + F ++   +     GTGLGL + K +V+   G   + S   +GT   +
Sbjct: 433 GIPPHHLGRIFERFYRVDAGRSRDLGGTGLGLAIVKHLVELMNGSIEVESAIGRGTQFTV 492

Query: 807 IF 808
             
Sbjct: 493 RL 494



 Score = 40.8 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/264 (7%), Positives = 60/264 (22%), Gaps = 10/264 (3%)

Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA 248
                  +   L           +   +    ++   +          +  +  +     
Sbjct: 11  AKLAAGTVLALLVAGVPIERLAARDMEAALLAEHSPRAAVDAALLRSRRTLLLGMGAVIV 70

Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
               V     + +           +     +L+     +  G L+  ++      S  + 
Sbjct: 71  VAVSVGAATAFFVARPIRGLTRFAQAMSEGDLSTRAPLRGSGELRQLARALNHLTSELSR 130

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLL-------TKYKSVDDI 360
            +     +    L    +D       V    G +  AN +   +            ++ I
Sbjct: 131 STAEVRTE--RALLAGILDGMSEGVLVLDRDGRILLANRALRAMASLGEDALGRSVIESI 188

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
             A     +  A K  +   ++  +     R  +   +R    +    +           
Sbjct: 189 RNARLTEAIQLAGKRDEPVDVEVDLGRTLPRRLLVRVSRRKGPERLGHDEREALAAWGAD 248

Query: 421 ANQFPENMPQNGIEPEDVDTRINK 444
            +          +  +  D R  +
Sbjct: 249 HDGASAEPGLIAVFHDVTDLRRLE 272


>gi|311109196|ref|YP_003982049.1| sensory box protein 11 [Achromobacter xylosoxidans A8]
 gi|310763885|gb|ADP19334.1| sensory box protein 11 [Achromobacter xylosoxidans A8]
          Length = 1111

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 122/661 (18%), Positives = 234/661 (35%), Gaps = 48/661 (7%)

Query: 181 FGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV 240
           F  V + +  +    L    D+       +  G   V       F         R+ +  
Sbjct: 81  FDAVQIAKYRSQGEELLLESDEDSRSQWILGSGSGRVANAAIGKF-FNLAEQIGRIPSGS 139

Query: 241 SSLTEYYAHK------DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294
            +                +      P     +  L +++ +  +   + +++    T  +
Sbjct: 140 PADHGNSLASFFFGVNGSIAGLVPAPDQAVRQRILADRDRYLALLTGEVSRRMLIAT--D 197

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK-CPIPFFVY-----SHGNLFYANPSF 348
              +++  L      +      +   +    +DK  P+   V        G    AN   
Sbjct: 198 AGTDTWRSLRWIPPVANPITGKQVFRIGGTILDKGVPVAVLVTEYAPLRPGATQAANRQA 257

Query: 349 LLLTKYKSVDDIEIAG------------GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA 396
                  +   +  A               + L D P  +     +      S+     +
Sbjct: 258 GAFAIISASGQLIAASPGAESAPAQEAAPAADLADIPAGTRQERTRSGQFSISEGLGPTS 317

Query: 397 SARLHTIQWN---RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN-KRKMEIEVM 452
              + T+ W+      +  +T      A                V   +  + ++ +E  
Sbjct: 318 WVLVFTLDWSSIVNAIAAQLTMPATMTATTLALIWALLFYFELRVVRPLMNRSRLALESE 377

Query: 453 QL-CSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
            L  +++E    G+ +I+   G  L  + A+ K+                L     +   
Sbjct: 378 HLNRTLIETAPVGLGLIDAASGSPLLHSPAMEKMTARVGAG------KFSLSAELANRYR 431

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCYSLTMHDISEWKQEK 568
                         +E+      ++   ++L + +   +   ++       D++E  Q  
Sbjct: 432 RRAGVAAGTRDTDVVEEDLSFVARDGNPVTLSVSMAGARYRGANVVVAAFIDVTEKYQLA 491

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
            +L  AK  A++ ++ KS FLA +SHEIRTPL AI+G  E++   R  P+          
Sbjct: 492 QRLREAKAAADRGNAAKSAFLAAMSHEIRTPLHAILGHLELLSRSRLAPV----QRNRLE 547

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            +  S  L+L  ++D+LD SKIE+G+++L      L E  S A+S+    A  K + +  
Sbjct: 548 TVRASSGLLLATISDVLDFSKIEAGELSLEQTEFDLLEVASRALSMFAPQAQAKGLALLG 607

Query: 689 SFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747
                +   +  D   + Q+  N+LSNAI FT  G Q+++    T    + + V D+G+G
Sbjct: 608 ELGAALRLPMRGDATRLGQVIHNLLSNAIKFTDQG-QVVLRVR-TDTTSIAIEVEDSGIG 665

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           MT  + +   + F Q   +   R  GTGLGL L   +V+A  G   + S P +G+L    
Sbjct: 666 MTEEQTQSVFRAFSQADATIGRRYGGTGLGLTLCCRLVEAMGGSLSVRSEPGRGSLFAFT 725

Query: 808 F 808
            
Sbjct: 726 L 726


>gi|163853656|ref|YP_001641699.1| PAS sensor protein [Methylobacterium extorquens PA1]
 gi|163665261|gb|ABY32628.1| PAS sensor protein [Methylobacterium extorquens PA1]
          Length = 1086

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 103/777 (13%), Positives = 212/777 (27%), Gaps = 73/777 (9%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYG--- 145
                    +    + I +    ++G  + +    +        + D+     T      
Sbjct: 185 GPDHAFAFANAAYRQLIAHR--DVLGRPVREALPEIEGQGFFELLDDVFSTGRTHTAHGA 242

Query: 146 -KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
             T L    G      +D    P+       +G   F             A     + +F
Sbjct: 243 PVTILRVPGGMPERRFLDFVYQPMRDAAGTITGV--FVDGSDVTERITGNAALAESEARF 300

Query: 205 SHLHEIKKGHSSVEKEKY--DIFSQQSPPPHLRMKNKVSSLTEYYA-HKDDVLKTEKYPL 261
             + +       V          +++      + + +   L    A H DD   +    L
Sbjct: 301 RTMADDAPVMMWVTGPDGACQYLNRRWYDFTGQNEAQALGLGWLEAVHPDDRGWSGDTFL 360

Query: 262 LT-SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE----SFEYLSHRNHPSLSAYFD 316
              +       +      +                           +      +      
Sbjct: 361 RANARHEGFSLEYRLRRRDGVYRWAIDTASPRFAADGSFLGYIGSVVDIEERRAAELALA 420

Query: 317 EGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
           E E      V+   I  + +       +  P    +       D+ +      L      
Sbjct: 421 ESEERLRLAVESGEIGLWDFDPRAGTLFWPPRIKAMFGLAPGADVTLDDFADGLHPD--- 477

Query: 376 SDNNAIKPVMLYRSDRTCIAA-SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
            D   +        D    A        I         +        +     +   G  
Sbjct: 478 -DRARVTAAFAAALDPVARAFYDEEFRAIGRADGTVRWVAAKGRGVFDAEGRCLRGVGSA 536

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
            +    +  + ++     +L ++L+  +  I +++        NRA  +L GY +++   
Sbjct: 537 IDITARKATEERLVEATRRLDAVLDNATQAIFMMDERQHCAYMNRAAERLTGYSLDETHG 596

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI---TLGSTKEEKLLSLRIIIKKLPFS 551
           K     +    P    + L E           +     +   ++     +      +   
Sbjct: 597 KALHDVVHHTRPDGSPYPLHECPIDQAFPENNQEQGQEIFVHRDGSFYPVAFTASPIRDE 656

Query: 552 S----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS--------------------D 587
                   +   +I    + K +L       E++ + ++                     
Sbjct: 657 GGTPIGTVIEARNIEGELRAKAQLEAFNASLEQQVAARTAELMRTEEALRQSQKMEAVGQ 716

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
               ++H+    LT I G  E +   R           Y N    +      + + LL  
Sbjct: 717 LTGGLAHDFNNLLTGITGSLE-LLQTRLAQGRITEIDRYVNAAQGAAKRAAALTHRLLAF 775

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707
           S+    +  L  +P  ++  V     L++       I +    A  +  +L D   ++  
Sbjct: 776 SR----RQTLDPKPTDVNRLVMGMEDLLRRTI-GPSITLEVVAAGGLWSVLVDPSQLENA 830

Query: 708 ALNILSNAIHFTPSGGQIIISTT-------------HTSNEEVILRVRDTGVGMTNYELE 754
            LN+  NA    P GG+I I T                  + + L V D+G GM+   + 
Sbjct: 831 LLNLCINARDAMPDGGRITIETANKWLDDRGAKERDLDPGQYLSLCVTDSGTGMSPDVIA 890

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
           KA  PF          G+GTGLGL +    V  + G+  I+S   +GT + +  P +
Sbjct: 891 KAFDPFFTTKP----IGQGTGLGLSMIYGFVRQSGGQVRIYSEVGQGTTMCLYLPRH 943



 Score =  144 bits (362), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 49/532 (9%), Positives = 130/532 (24%), Gaps = 33/532 (6%)

Query: 82  TVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN 141
            +   W      ++   ++      G    + +G    +V   +       +      + 
Sbjct: 51  PMLIVW---GEAHVTLYNDGYAPMCGARHPRALGQAFDEVWHDIWDQVGPILSRAYAGEG 107

Query: 142 TW-YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
           T            G            P+   +   +G   F                   
Sbjct: 108 THMDDIALTMHRNGYPEETHFAFGYTPVRIEDGTVAGM--FCACSETTASVRAGRQMHAE 165

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
            ++F+ L E      +V       F+  +      + ++            ++     + 
Sbjct: 166 RERFARLFEQSPSFVAVLDGPDHAFAFANAAYRQLIAHRDVLGRPVREALPEIEGQGFFE 225

Query: 261 LLTS------EESSLPEQEDFHTINL---NQYTKKQYFGTLQNNSKESFEYL----SHRN 307
           LL          ++         +      +      +  +++ +               
Sbjct: 226 LLDDVFSTGRTHTAHGAPVTILRVPGGMPERRFLDFVYQPMRDAAGTITGVFVDGSDVTE 285

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
             + +A   E E       D  P+  +V    G   Y N  +   T       +   G L
Sbjct: 286 RITGNAALAESEARFRTMADDAPVMMWVTGPDGACQYLNRRWYDFTGQNEAQAL-GLGWL 344

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
             +    +    +               +   RL   +               +      
Sbjct: 345 EAVHPDDRGWSGDTFLRANARH---EGFSLEYRL---RRRDGVYRWAIDTASPRFAADGS 398

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
            +   G   +  + R  +  +     +L   +E+   G+   +     L     +  +FG
Sbjct: 399 FLGYIGSVVDIEERRAAELALAESEERLRLAVESGEIGLWDFDPRAGTLFWPPRIKAMFG 458

Query: 487 Y-PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS-TKEEKLLSLRII 544
             P  D+    F   L  +  + +       L    R   ++        +  +  +   
Sbjct: 459 LAPGADVTLDDFADGLHPDDRARVTAAFAAALDPVARAFYDEEFRAIGRADGTVRWVAAK 518

Query: 545 IKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
            + +  +         +  DI+  K  + +L  A +  +    + +  +  +
Sbjct: 519 GRGVFDAEGRCLRGVGSAIDITARKATEERLVEATRRLDAVLDNATQAIFMM 570


>gi|295114872|emb|CBL35719.1| Signal transduction histidine kinase [butyrate-producing bacterium
           SM4/1]
          Length = 596

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 90/382 (23%), Positives = 161/382 (42%), Gaps = 18/382 (4%)

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIIN----REGIILSTNRAVSKLFGYPVEDILRKP- 496
               +++ +      +     D I +IN     E   +S N    ++ G+  +     P 
Sbjct: 215 RQTEQLKRQNQLFELLSRNI-DNIFMINDLHHPERNYISEN--AGRILGFKPDPKKVSPT 271

Query: 497 -FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555
               ++++     +      +       T          E ++  L+           + 
Sbjct: 272 LLFEYMDEQDREKVKQVFDTVGESYWSCTFHYRHPALAGE-RIFLLQTYRIWTEGEDRFI 330

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
             + D ++    + +L  A + AEK +  KS+FL+R+SHEIRTP+  IIG   +I  Q  
Sbjct: 331 TVLTDQTQILSTQKELEAAIQQAEKANRAKSEFLSRMSHEIRTPMNGIIGM-GMIAMQNL 389

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
           G   + R  +    I+ S   +L ++ND+LD+SKIESG++ +  +       +    +++
Sbjct: 390 G--DSSRVEDCIRKINLSSRHLLTLINDVLDMSKIESGRIEIKRDVFDFRLFLESVSNVI 447

Query: 676 QLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
              A +K +     F  ++   +  D   V QI +N+LSNA+ FTP GG I++       
Sbjct: 448 SGQARDKGLNFDVIFLGDMEEELFGDALRVNQILMNLLSNALKFTPEGGSIVLRIAKMDE 507

Query: 735 E----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
           +     +   V DTG G+     EK   PF Q          GTGLGL +++   +   G
Sbjct: 508 DSTTVWLKFEVSDTGCGIEEKNYEKIFMPFEQEHEDISHVYGGTGLGLSISRRFAELMDG 567

Query: 791 KFYIFSTPAKGTLIEIIFPLYD 812
           +  + S   KG+   +  PL+ 
Sbjct: 568 RLTVSSQVGKGSTFTLTMPLWP 589


>gi|288941589|ref|YP_003443829.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
 gi|288896961|gb|ADC62797.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
          Length = 755

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 91/381 (23%), Positives = 166/381 (43%), Gaps = 20/381 (5%)

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPF 497
           +    ++ +     +  S++E+  D +    ++ G ++  +  V  + GY + ++   P+
Sbjct: 13  EQTGAEQALRESEERYRSLVESLPDIVYSFSDKRGGVV-WSARVEAVLGYSLAELQANPY 71

Query: 498 TVF--LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK---LPFSS 552
                +  +    +   +            +       +  +   L     +   +    
Sbjct: 72  LWNQSIHPDDRPRVQAVIAAFKQGAH---FDLEYRIKDRWGQWRWLHDRSIQRRLVGDEV 128

Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
                  DI+E KQ +     AK  AE  ++ KSDFLA +SHE+RTPL A+IG ++V++ 
Sbjct: 129 ILDGLASDITERKQTERAQVEAKLAAEAATAAKSDFLAHMSHELRTPLNAVIGLTQVLEQ 188

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
                            I  +G  +L I ND+LD++KIE+ ++ +   P +L   +    
Sbjct: 189 ANLPL----EQRSLVQRIRLAGQAMLQISNDILDLAKIEANQLAIASRPCTLSGLLQRLE 244

Query: 673 SLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT- 730
           SL    A  K + +  + A  +  ++L D   ++QI  N++SNAI FT  G  + + T  
Sbjct: 245 SLQGEAARAKGVTLEIAPAPALSGQVLTDPLRLEQILANLVSNAIKFTDRG-TVRVWTET 303

Query: 731 ---HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
                S+  +   VRDTG+G+    LE+   PF Q  +S   R  GTGLGL ++K +V+ 
Sbjct: 304 LSVSESSARLRFVVRDTGIGIAPSALEQLFTPFIQADSSITRRFGGTGLGLSISKRLVEL 363

Query: 788 NMGKFYIFSTPAKGTLIEIIF 808
             G   + S   +G+      
Sbjct: 364 MGGTIGVESCEGQGSTFWFEL 384


>gi|300716381|ref|YP_003741184.1| Sensor protein [Erwinia billingiae Eb661]
 gi|299062217|emb|CAX59334.1| Sensor protein [Erwinia billingiae Eb661]
          Length = 1192

 Score =  299 bits (765), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 125/734 (17%), Positives = 258/734 (35%), Gaps = 67/734 (9%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEG 154
           +   +  +         + +  +L  +     I        L+     +  +   W    
Sbjct: 235 ITLANRAIAAL----PQEDV-EQLHRLWQPDLIGITQTAAPLV-----FSEEEKHWMKSH 284

Query: 155 TNLYVPI--DLAALPIY--SRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
             + V +  +  A PI     +    G  G              AL   LD  F  +   
Sbjct: 285 PVVNVLLYSEDNAAPISFVDSSGALHGMVG--------DLFSAIALKTGLDFHFETVDST 336

Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270
           ++    V   K D+ +  +P       N+    T  Y      L   K      +++S+ 
Sbjct: 337 RELVEGVMSAKADMLASLTPSEKR---NQQLLFTRPYMRSAFALAVRK------KDNSIH 387

Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330
              D     L         G +++   E    +       LS+  +   + +   +    
Sbjct: 388 SLPDLRGKRLALVRDTGIEGMVRSRYPEIQLVMVENEAQLLSSVANGKADASASILMMAD 447

Query: 331 IPFFVYSHGNLFYA-----NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
                     L        NP+++     ++   +     L  +L +   S+  ++    
Sbjct: 448 YHIKTQYANRLKIVATVGDNPAWISFGVGRTDPQLRSL--LDKVLLSIPPSEMESLANRW 505

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
                       +R   +         +                   +  +       +R
Sbjct: 506 RPSDFVVVDNFWSRYREVLIASGIFTLLIIALITGW--------ALYLRQQIKRKAELRR 557

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV---FLE 502
           ++  ++ QL  ++ +    +++ +    ++  N+   +  G   +  L            
Sbjct: 558 QLNNQLSQLREVVNSMPFPVSLRDNSARLIYCNQRYLEETGIDYDASLGTTMEQSPGLRT 617

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII--IKKLPFSSCYSLTMH- 559
               S  +  + E+++ D     ++        +  + L +   I+    S    + +  
Sbjct: 618 PEQASFYHQQMLEVIATDRSIVEDRRYDLYDNPDSSIGLTVYQWIQPWHDSDGKVMGVIG 677

Query: 560 ---DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
              DI+E +    +L  AK+ AE  +  KS FL+ +SHEIRTP+ AIIG  ++   +   
Sbjct: 678 GWMDITEREALFAELRDAKERAEDSNRAKSVFLSTMSHEIRTPMNAIIGMLDMALKKGRQ 737

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
              +   ++       S + ++ ++ D+LDIS+IE G +  + E V+L + +   + + Q
Sbjct: 738 KEID---LQALEVAYESADSLVGLIGDILDISRIEGGHLEFNPETVNLGKLIDNMLKVYQ 794

Query: 677 LYANEKRILIRTSFANN-IPRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSN 734
             A +K I +   + +  I  +LAD   +KQ+  N+LSNAI FT  GG  + +S T    
Sbjct: 795 GLAIDKNITLSKHYPDEPIVDVLADPLRIKQVLANLLSNAIKFTDQGGVTLTLSQTRVPG 854

Query: 735 E---EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
               +  + V+D+G+G+         +PF Q  N +     GTGLGL +++ + +   G 
Sbjct: 855 SSSVQYCIEVQDSGIGIAAASQAALFQPFSQAENRRA----GTGLGLYISRTICENMQGS 910

Query: 792 FYIFSTPAKGTLIE 805
             + S    GT + 
Sbjct: 911 LTLSSEKGVGTRVR 924


>gi|281355428|ref|ZP_06241922.1| multi-sensor signal transduction histidine kinase [Victivallis
           vadensis ATCC BAA-548]
 gi|281318308|gb|EFB02328.1| multi-sensor signal transduction histidine kinase [Victivallis
           vadensis ATCC BAA-548]
          Length = 596

 Score =  299 bits (765), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 96/592 (16%), Positives = 215/592 (36%), Gaps = 53/592 (8%)

Query: 242 SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301
           SL + Y  + ++    +  LL+ E   L + +    +        +  G           
Sbjct: 30  SLEQLYITRTEMELQTRARLLSRESRKLIQDDRRRQL----QRFYEEEGKATETRITLIA 85

Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTK------YK 355
                   S         +     +         +  G  FYA                 
Sbjct: 86  PDGEVLADSEEEPARMDNHRMRPEIIG---AINSFRDGRPFYATIRHSSTLGRRLIYCAA 142

Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
            ++       L T      L        + +  +       +A L  + +   +      
Sbjct: 143 PIEIDGKTYVLRTAFSIHNLDKVVRQARLDILLAITVTALVAAILCYVIFRTVSRPVWEL 202

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKR-------------KMEIEVMQLCSILEATS 462
                     +   +  I    V   + +              ++  E  +  +I  A +
Sbjct: 203 CRAAARISGGDLDTRLPIPERGVLRELGEHLSRMAEELKKRINEISREKSERDAIFAALA 262

Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522
           +G+ +++R+  ++  N A  ++F    ++    P +  +       ++ ++ ++      
Sbjct: 263 EGVIVLDRQDNVIDINTAARQIFKLK-DEPCGLPVSGIIR---NLEISAFIEKLKKEGAP 318

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
              E      + +++ L +R    K      S   L ++D+++ ++ +N           
Sbjct: 319 VEAEFPVQLPSGDKQ-LRVRGTRLKWSEDKASGILLVIYDMTQLRKLENF---------- 367

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
               + DF+A VSHEI+TPLT I G  E +++       +     +   I+     +  +
Sbjct: 368 ----RRDFVANVSHEIKTPLTVIRGAVETLRDGAIHEPESAE--RFMQIIEMHSERLNAL 421

Query: 641 VNDLLDISKIESGKMN--LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
           V D+L +S++E   +    +  PV++   +S A+ L Q  A+   + +    + + P +L
Sbjct: 422 VQDILSLSQLECRAVGDGYNMVPVNVSTPISTAVELAQARADAAGLKLVVETSAD-PEVL 480

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
            D++ V+Q  LN++ NAI  +    ++ I T    + E ++ V D G G+    L +  +
Sbjct: 481 IDVQLVEQAILNLIDNAIKHSGEKSEVRI-TAREESGEAVIEVADHGCGIPAEHLPRVFE 539

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            F ++  ++  +  GTGLGL + K ++  + G   + ST  +G+   +  P+
Sbjct: 540 RFYRVDKARSRKAGGTGLGLAIVKHVMQLHHGSAEVHSTVGQGSTFTLRLPV 591


>gi|260842598|ref|YP_003220376.1| sensory histidine kinase PhoR in two-component regulatory system
           with PhoB [Escherichia coli O103:H2 str. 12009]
 gi|257757745|dbj|BAI29242.1| sensory histidine kinase PhoR in two-component regulatory system
           with PhoB [Escherichia coli O103:H2 str. 12009]
          Length = 431

 Score =  299 bits (765), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 73/427 (17%), Positives = 151/427 (35%), Gaps = 37/427 (8%)

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             +L       I     L  + W     L +         +        G+    +  + 
Sbjct: 33  WFLLASVTGLLIWHFWNLLRLSW----WLWVDRSMTPPPGRGSWEPLLYGLHQMQLRNKK 88

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            +R++   + +  S  E+  D + +   EG I   N    ++ G    +   +     L 
Sbjct: 89  RRRELGNLIKRFRSGAESLPDAVVLTTEEGGIFWCNGLAQQILGLRWPEDNGQNILNLLR 148

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
               +               +   +         + L +R++           +   D++
Sbjct: 149 YPEFTQYL----------KTRDFSRPLNLVLNTGRHLEIRVMPYTHKQ---LLMVARDVT 195

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  Q +                + +F A VSHE+RTPLT + G+ E++  Q        +
Sbjct: 196 QMHQLEG--------------ARRNFFANVSHELRTPLTVLQGYLEMMDEQPLEGAVREK 241

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                + +      +  +V  LL +SKIE+   +L  E V +   +       Q  + +K
Sbjct: 242 A---LHTMREQTQRMEGLVKQLLTLSKIEAAPTHLLNEKVDVPMMLRVVEREAQTLSQKK 298

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           +        N + ++  +   ++    N++ NA++ TP G  I +      +      V 
Sbjct: 299 Q-TFTFEIDNGL-KVSGNEDQLRSAISNLVYNAVNHTPEGTHITVRWQRVPHG-AEFSVE 355

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G G+    + +  + F ++  ++  +  G+GLGL + K  V+ +  +  I ST  KGT
Sbjct: 356 DNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHAVNHHESRLNIESTVGKGT 415

Query: 803 LIEIIFP 809
               + P
Sbjct: 416 RFSFVIP 422


>gi|296111035|ref|YP_003621416.1| histidine protein kinase; sensor protein [Leuconostoc kimchii IMSNU
           11154]
 gi|295832566|gb|ADG40447.1| histidine protein kinase; sensor protein [Leuconostoc kimchii IMSNU
           11154]
          Length = 619

 Score =  299 bits (765), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 79/405 (19%), Positives = 158/405 (39%), Gaps = 37/405 (9%)

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII 474
                 +++              V+          E  +L S+L   +DG+   NR G I
Sbjct: 225 VNHIYGSDELGHLAQSVNELSTRVEESTETVNA--ERNRLDSVLTHMADGVLAANRRGEI 282

Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
              N+A +   G   E+ + K     L       +   L  +    +        L    
Sbjct: 283 TIINQAAANFVGVDREEAIGKNVVDLLRLKGKRTLRDMLENLEDFRID-------LSDDS 335

Query: 535 EEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
           ++ L+   + + K      S   + +H+I+E ++  ++                 F++ V
Sbjct: 336 KDILVQAYVSLIKRQSGFISGLVVVLHNITEQQRIDSERRM--------------FVSNV 381

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHE+RTPLT++  + + +               +   +      ++ ++NDLL +S+++ 
Sbjct: 382 SHELRTPLTSVRSYVDALAEGAIN--DPDMAQNFLGVVQDETQRMIRMINDLLALSRLDQ 439

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANE---------KRILIRTSFANNIPRILADLRS 703
           G M +  E ++L+   +  ++   +             K   I+  F N    +  D   
Sbjct: 440 GTMEVKLEVINLNSLFNFVLNRFDMIIENDAKNADTPNKSYNIQREFTNEDVWVEVDPDK 499

Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
             Q+  NI++NA+ ++P GG I       +    IL + D G+G+   +L+     F ++
Sbjct: 500 FTQVLDNIMNNAVKYSPDGGTITARL-IKTKTRAILSISDQGLGIPRKDLDNIFNRFFRV 558

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
             S+     GTGLGL ++K +V+   G+ ++ S   KG+   I  
Sbjct: 559 DKSRSRAQGGTGLGLAISKEVVEKFNGRIWVDSVENKGSTFYISL 603


>gi|170746662|ref|YP_001752922.1| multi-sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
 gi|170653184|gb|ACB22239.1| multi-sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 974

 Score =  299 bits (765), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 101/643 (15%), Positives = 196/643 (30%), Gaps = 75/643 (11%)

Query: 224 IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY 283
           I    +     R   +   +       +  L              L ++ D   +     
Sbjct: 75  IVPGVAFEAIARAVAETCVVRPNGMTVEGWLAERIAHYRAPGGPLLQQRVDGRWV----- 129

Query: 284 TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG---N 340
              Q      N+      Y                +      +   P     +  G    
Sbjct: 130 ---QVNERKTNDGGVVAVYTDVTEIKRAEQVLQATQGRLTYLLTASPSMICSFEVGGRNA 186

Query: 341 LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400
             + + +   L  Y+  D +         L         A  P +L          +   
Sbjct: 187 PTFISENVRDLLGYEPGDYLAGPEFWLERLHPDDRDRVLAEFPRLLADGH------NVIE 240

Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE---------- 450
           +  Q        +        +   + +       +  + +  +  ++ +          
Sbjct: 241 YRFQHANGTYRWVRDEQRLLRDLGGQPVEVVESWSDITERKEAELALQKQTAFVELLQAA 300

Query: 451 ----------VMQLCSILEA-----------------------TSDGIAIINREGIILST 477
                        L   LE                           GI   +    +   
Sbjct: 301 AAAANEAPTVEDALRFCLERVAQHAGWPVGHAHILARDGTRTLLPTGIWHCDPGADVARF 360

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPS----VMNHYLTEILSLDLRQTLEKITLGST 533
             A +         +  +       + +        +      +   +R           
Sbjct: 361 QAATAATSLAAGSGLAGRVLVSGAPEWSVGDPTLAADPRAPAAVEHGIRAGFGFPVTV-G 419

Query: 534 KEEKLLSLRIIIKKLPFSSCYSLTMHDIS-------EWKQEKNKLSHAKKIAEKESSHKS 586
           ++   +         P  +     M +I        E KQ +  L  AK+ AE+ S  KS
Sbjct: 420 RDVVAVLEFFARDASPPDASLLRVMSNIGAQLGRVIERKQAEESLRQAKEAAEEASRAKS 479

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
            FLA +SHE+RTPL AIIGF+  +  +R   +   +  E    I  S   +L ++N +LD
Sbjct: 480 SFLANMSHELRTPLNAIIGFT-RLVMRRAKDVLPVKQFENLEKILASSEHLLSLINSILD 538

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706
           ++K+E+G+M +     +L+  +   +  V+     + + +     +  P +  D   ++Q
Sbjct: 539 LAKVEAGRMEVKPSDFALEPVLDLCLRTVEPLVKNEGVRLVRDVRDPPPMLRTDEEKLRQ 598

Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
           I +N+LSNAI FT +G  + +         +   V DTG+G+    L    + F Q+ NS
Sbjct: 599 ILINLLSNAIKFTEAGS-VTLRVRSVDEG-IEFAVMDTGIGIPAGALSAIFEEFHQVDNS 656

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
                 GTGLGL ++  +     G+  + S   +G+   +  P
Sbjct: 657 ATRSHSGTGLGLAISHRLARLLGGRIDVESREGEGSTFTLTIP 699



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/135 (11%), Positives = 41/135 (30%), Gaps = 10/135 (7%)

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLF-GYPVEDILRKPFTVFLEQNTPSVM 509
             +L   +E +S+G A+ + +  ++  N     L  G     +    F         + +
Sbjct: 34  KQKLIEAIECSSEGFALFDSDDRLVLCNGHFQDLHPGLSTIIVPGVAFEAIARAVAETCV 93

Query: 510 NHYLTEILSLDLRQTLEK------ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                  +   L + +          L    + + + +    ++            D++E
Sbjct: 94  VRPNGMTVEGWLAERIAHYRAPGGPLLQQRVDGRWVQVN---ERKTNDGGVVAVYTDVTE 150

Query: 564 WKQEKNKLSHAKKIA 578
            K+ +  L   +   
Sbjct: 151 IKRAEQVLQATQGRL 165


>gi|270294242|ref|ZP_06200444.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270275709|gb|EFA21569.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 508

 Score =  299 bits (765), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 97/411 (23%), Positives = 175/411 (42%), Gaps = 26/411 (6%)

Query: 403 IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
           I+      L +                      +  +  + +R+ E     L SILE   
Sbjct: 111 IRIESGEKLYIAVRMVYLNRN-----YVIAFIRDITEDEVQRRENEKYRFFLESILENLP 165

Query: 463 DGIAIINR--EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520
               + ++  EG  L  N+  +++   P EDI+      F      + +     E+   +
Sbjct: 166 IATTVKDKNDEGRYLIWNKKAAEMMEVPAEDIVGHYEEEFKPLMQDNFIQETDKEVEESE 225

Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKL--PFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578
           + Q+  K  +     E +LS    +             +  DI+E           K+ A
Sbjct: 226 IPQSYIKHFVNPKGREYILSFHKTLVSYNKGKERWIVSSALDITELLAA-------KEKA 278

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
           E+ +  KS FLA +SHEIRTPL AI+GFS ++ +     + +    EY + I+ +  L+L
Sbjct: 279 EEANRLKSAFLANMSHEIRTPLNAIVGFSSILSDY----IQDEDTKEYIHIIEENTQLLL 334

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
            ++ND+LD+S+IE+G +      + +++ + E  ++ +L    + + IR     +   I 
Sbjct: 335 QLINDILDLSRIEAGILEFTEGDMDVNKTLDEMQTMAKLKLPSE-VSIRLLPGADYCIIH 393

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
              + V+Q+  N LSNA+  T  G  I I       + +   VRDTG G+   + +   +
Sbjct: 394 TVPKRVRQVLNNYLSNALKHTEEGF-IDIGYHLPQEDRIRFFVRDTGCGIPPEKQKDVFE 452

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            F ++ + +    +GTGLGL +   + +   GK  + S P KG+      P
Sbjct: 453 RFVKLNSFK----QGTGLGLSICTMIAEKMNGKVGVSSIPGKGSEFWFEIP 499


>gi|209695978|ref|YP_002263908.1| aerobic respiration control sensor protein ArcB [Aliivibrio
           salmonicida LFI1238]
 gi|208009931|emb|CAQ80244.1| response regulator, aerobic respiration control sensor protein ArcB
           [Aliivibrio salmonicida LFI1238]
          Length = 788

 Score =  299 bits (765), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 85/396 (21%), Positives = 162/396 (40%), Gaps = 19/396 (4%)

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
            +E E       + ++  +   L S L+ + D I   N  G     N+A+  L G   ++
Sbjct: 135 DLENEVFHREKAQLELAEQTALLRSYLDTSPDIIYYRNELGFFSGCNKAMEDLIGKSEKE 194

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
           ++             + +     ++L  +   T E+        +    L  I       
Sbjct: 195 LIGLSPKDVYSIEVATKVIDTDRQVLKENQALTYEQWLDYPDGRKACFELSKIPFYSKDG 254

Query: 552 S--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                     +I++ K  +  L       EK S  K+ F++ +SHE+RTPL  I+G S +
Sbjct: 255 RHLGLVGFGRNITDRKSYEEAL-------EKASRDKTTFISTISHELRTPLNGIVGLSRM 307

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           + + R     +     Y   I+ S   + +I ND++D+ K +  ++ L  +P+     V+
Sbjct: 308 LLDTRL----DDEQHNYMRTINVSAITLGNIFNDIIDMDKFDRRRLELLPKPLDFISFVT 363

Query: 670 EAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQI-II 727
           E  ++  L A +K +        ++P  I  D   ++Q+  N++ NA  FT  GG +  +
Sbjct: 364 EMENISGLMAEQKGLRFDLERLTSLPAHICVDSTRLRQVLWNLIGNATKFTKEGGVVMSV 423

Query: 728 STTHT-SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGEGTGLGLPLAKAMV 785
           S      N ++   V D+G+G+   ELE     + Q+   +      GTG+GL ++K ++
Sbjct: 424 SADIHGDNADITFEVEDSGIGIPESELENVFTMYYQVKQGKDNLHAVGTGIGLAVSKELI 483

Query: 786 DANMGKFYIFSTPAKGTLIEIIF--PLYDTSHPHDC 819
           +   G   + S    G+   +    PL D     + 
Sbjct: 484 NLMGGDITVTSDVGFGSTFIVSINVPLVDHVEEEEA 519



 Score = 46.2 bits (108), Expect = 0.021,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 40/126 (31%), Gaps = 5/126 (3%)

Query: 93  GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGKTTLWP 151
           G+    ++ +   IG    ++IG+   DV  I       +    +LK       +  L  
Sbjct: 175 GFFSGCNKAMEDLIGKSEKELIGLSPKDVYSIEVATKVIDTDRQVLKENQALTYEQWLDY 234

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
            +G       +L+ +P YS++    G  GFG               ++  +  +      
Sbjct: 235 PDGRKACF--ELSKIPFYSKDGRHLGLVGFG--RNITDRKSYEEALEKASRDKTTFISTI 290

Query: 212 KGHSSV 217
                 
Sbjct: 291 SHELRT 296


>gi|49479230|ref|YP_037715.1| sporulation kinase A [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|49330786|gb|AAT61432.1| possible sporulation kinase A [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 510

 Score =  299 bits (765), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 97/529 (18%), Positives = 200/529 (37%), Gaps = 39/529 (7%)

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTK 353
           +S +   + +                +     +  P     +   G + + NPS   +  
Sbjct: 7   SSTQKKRHPNISRRLRNHIQNRSLTEMYASLFEHNPDSIISLNLEGVILHINPSAERILG 66

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
           Y S++ +E     S L       + +  + V+    +         + +I       L +
Sbjct: 67  YTSLE-LEQKNITSIL-------EAHISEQVLQNIKNTEVDNQQEYILSICHKNGFLLDV 118

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
                    Q         ++P +   RI +  ++    +L +++ +    +   + EG 
Sbjct: 119 VTKLVPIFVQNRLTGVYTIMKPLEKSERI-ENMLKESEKRLRTLVNSMPAFVIFKDHEGR 177

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN----HYLTEILSLDLRQTLEKIT 529
            L  N      F +       K  +  ++ N            + E+     RQ L    
Sbjct: 178 WLEANDYALSCFNFHHVPYRGKKDSELIQYNEAYREAFLHCEEVDELAWQ-QRQILHGEE 236

Query: 530 LGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
               +++  L L +    L           +   D++E K+ +  L  ++K+A       
Sbjct: 237 FIIHRDDFDLILSMSKVPLYHPDGSRKGLIVMGRDVTELKETEKLLRKSEKLAVV----- 291

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
               A ++HEIR PLT++ GF  ++      P  N  +  Y + +    + +  I +  +
Sbjct: 292 GQLTAGIAHEIRNPLTSLKGFLTLLL-----PEINEEHKWYIDVMLSEISQMESITSQFM 346

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
            +SK +     L  +  ++   + E ++ +   A    + I     + +  I  D   +K
Sbjct: 347 AMSKPQ----VLAIQTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYVYDIQCDGNQLK 402

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           Q+ +NIL NAI   P+GG I I T    +  +++R+ D G G+    + +  +PF     
Sbjct: 403 QVFINILKNAIEAMPNGGNIFIQTKPLEDNFILIRIIDEGCGIPENRISRLGEPFY---- 458

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
              ++ +GTGLGL +   +++ + GK +I S   KGT+++I  PL  + 
Sbjct: 459 --SLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTIVDIQLPLSSSH 505


>gi|144899228|emb|CAM76092.1| Signal transduction histidine kinase [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 730

 Score =  299 bits (765), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 95/709 (13%), Positives = 222/709 (31%), Gaps = 47/709 (6%)

Query: 108 NYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALP 167
            +  +  G  L   S    +  +    D + ++ T  G+         +  V        
Sbjct: 39  LHRAETTGKLLAAASRDALLAWDFATLDSIAQEATSSGRLRYVRFMEKDGRV-----LAQ 93

Query: 168 IYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ 227
                   +GF     +         +     +        +      SV      +   
Sbjct: 94  YGDATAGPTGFSADDGLKTVDDGVLDQQAEILVAGVPYGRVQFGLDIDSVTAATAYMRGW 153

Query: 228 QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287
                 + M            +    L + +       +  +  +      +    T + 
Sbjct: 154 AFGISAVEMVLVALFSLLLGLYLTRQLASLRDASQRLAQGDMTYRIPVKGSDELAETARA 213

Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPS 347
           +      +  +SF             Y +   +   ET                 + + S
Sbjct: 214 FNT--MADRLQSFYGDLAEREARFRQYSEVNSDWYWET----------DRDERYVFISDS 261

Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR--TCIAASARLHTIQW 405
           F  +T       +               ++      +     +      A     + I+ 
Sbjct: 262 FESITGRSPATLLGKRRW------DLGSTEMEVDAELWQGHLEDLSAHRAFRDFKYWIEA 315

Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465
           +      +      + +     +   G   +         +    +  L   +E +   +
Sbjct: 316 DNGRPCWLKESGVPRFDDEGHFIGYRGTGADIT----AAMESAHRMHMLTRAVEQSPVSV 371

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
            I + +  I   N       GY  ++++ +  ++     T   +   L   L    +   
Sbjct: 372 VITDLDRRIQYVNPKFLDATGYGAQEVIGQMPSILKSGRTDDTVYQDLWATLERGEQWRG 431

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKE 581
               +   K+  L   +  I+ +         Y     DI++ K+ ++KL H     ++ 
Sbjct: 432 --EFVNRRKDGSLYWEQATIQPIRNLEGRITNYLGIKLDITDRKRAEDKLGHLLDELKRS 489

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
           +     F    SH+++ PL  I  F+  +  +R G   +    +Y  +++     +  +V
Sbjct: 490 NQDLEQFAYVASHDLKQPLRQISSFA-TLLERRLGDQASDEVRDYLGFLNDGAKRMQALV 548

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701
            DLLD S++      LH + V++DE +S A+ L+     +   +I       +P +  D 
Sbjct: 549 GDLLDYSRV--SHRPLHNDSVAMDEVLSAALVLLNAAMADGAAVIERQ---PLPNVQGDR 603

Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761
             ++++  N++ NA+ +       II          +  V D G+G+   + ++    F 
Sbjct: 604 SQLERLLQNLVGNALKYRDPARTPIIRIGCDDG---VFFVADNGIGIAADQADRVFMIFQ 660

Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFP 809
           ++ ++Q    EGTG+GL + + +V+ + G+ ++ S    +GT      P
Sbjct: 661 RLHSAQA--YEGTGIGLAICRKIVERHGGRIWLSSAGDGQGTTFFFTLP 707



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 44/437 (10%), Positives = 107/437 (24%), Gaps = 36/437 (8%)

Query: 38  KSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKE 97
             K  +   ++     F        S    L                + W  D       
Sbjct: 200 PVKGSDELAET--ARAFNTMADRLQSFYGDLAEREARFRQYSEVNSDWYWETDRDERYVF 257

Query: 98  ISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDL--LKRQNTWYGKTTLWPIEG 154
           IS+      G     ++G R  D+ S  + +D     G L  L     +      W    
Sbjct: 258 ISDSFESITGRSPATLLGKRRWDLGSTEMEVDAELWQGHLEDLSAHRAFRDFK-YWIEAD 316

Query: 155 TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214
                 +  + +P +     F G+RG G      +     +  +      +         
Sbjct: 317 NGRPCWLKESGVPRFDDEGHFIGYRGTG----ADITAAMESAHRMHMLTRAVEQSPVSVV 372

Query: 215 SSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQED 274
            +    +    + +          +V               T    L  + E     + +
Sbjct: 373 ITDLDRRIQYVNPKFLDATGYGAQEVIGQMPSILKSGRTDDTVYQDLWATLERGEQWRGE 432

Query: 275 F--HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP 332
           F     + + Y ++     ++N       YL  +   +     ++      + + +    
Sbjct: 433 FVNRRKDGSLYWEQATIQPIRNLEGRITNYLGIKLDITDRKRAEDKLGHLLDELKRSNQD 492

Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
                          F  +  +     +      +TLL+       +      L      
Sbjct: 493 L------------EQFAYVASHDLKQPLRQISSFATLLERRLGDQASDEVRDYL----GF 536

Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE-- 450
               + R+  +  +  +   ++  P    +   + +    +   +         +E +  
Sbjct: 537 LNDGAKRMQALVGDLLDYSRVSHRPLHNDSVAMDEVLSAALVLLNAAMADGAAVIERQPL 596

Query: 451 ------VMQLCSILEAT 461
                   QL  +L+  
Sbjct: 597 PNVQGDRSQLERLLQNL 613


>gi|228916268|ref|ZP_04079838.1| hypothetical protein bthur0012_34840 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228928689|ref|ZP_04091725.1| hypothetical protein bthur0010_33830 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228947254|ref|ZP_04109548.1| hypothetical protein bthur0007_33840 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|229123156|ref|ZP_04252362.1| hypothetical protein bcere0016_34460 [Bacillus cereus 95/8201]
 gi|228660249|gb|EEL15883.1| hypothetical protein bcere0016_34460 [Bacillus cereus 95/8201]
 gi|228812501|gb|EEM58828.1| hypothetical protein bthur0007_33840 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228831008|gb|EEM76609.1| hypothetical protein bthur0010_33830 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228843466|gb|EEM88544.1| hypothetical protein bthur0012_34840 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 516

 Score =  299 bits (765), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 98/529 (18%), Positives = 199/529 (37%), Gaps = 39/529 (7%)

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTK 353
           +S +   + S                +     +  P     +   G + + NPS   +  
Sbjct: 13  SSTQKKRHPSISRRLRNHIQDRSLTEMYASLFEHNPDSIISLNLEGVILHINPSAERILG 72

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
           Y S++ +E     S L       + +  + V+    +         + +I       L +
Sbjct: 73  YTSLE-LEQKNITSIL-------EAHISEQVLQNIKNTETDNQQEYILSICHKNGFLLDV 124

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
                    Q         ++P +   RI +  ++    +L +++ +    +   + EG 
Sbjct: 125 VTKLVPIFVQNRLTGVYAIMKPLEKSERI-ENMLKESEKRLRTLVNSMPAFVIFKDHEGR 183

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN----HYLTEILSLDLRQTLEKIT 529
            L  N      F +       K  +  ++ N            + E+     RQ L    
Sbjct: 184 WLEANDYALSCFNFHHVPYRGKKDSELIQYNEAYREAFLHCEEVDELAWQ-QRQILHGEE 242

Query: 530 LGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
               +++  L L +    L           +   D++E K+ +  L  ++K+A       
Sbjct: 243 FIIHRDDFDLILSMSKVPLYHPDGSRKGLIVMGRDVTELKETEKLLRKSEKLAVV----- 297

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
               A ++HEIR PLT++ GF  ++      P  N  +  Y + +    + +  I +  +
Sbjct: 298 GQLTAGIAHEIRNPLTSLKGFLTLLL-----PEINEEHKWYIDVMLSEISQMESITSQFM 352

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
            +SK +     L  +  ++   + E ++ +   A    + I     +    I  D   +K
Sbjct: 353 AMSKPQ----VLSIKTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYAHDIQCDGNQLK 408

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           Q+ +NIL NAI   P+GG I I T    +  +++R+ D G G+    + +  +PF     
Sbjct: 409 QVFINILKNAIEAMPNGGNIFIQTKPLEDTFILIRIIDEGCGIPEDRISRLGEPFY---- 464

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
              ++ +GTGLGL +   +++ + GK +I S   KGT+++I  PL  + 
Sbjct: 465 --SLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTIVDIQLPLSSSH 511


>gi|196034278|ref|ZP_03101688.1| sporulation kinase A [Bacillus cereus W]
 gi|218904768|ref|YP_002452602.1| sporulation kinase A [Bacillus cereus AH820]
 gi|195993352|gb|EDX57310.1| sporulation kinase A [Bacillus cereus W]
 gi|218539246|gb|ACK91644.1| sporulation kinase A [Bacillus cereus AH820]
          Length = 510

 Score =  299 bits (765), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 98/529 (18%), Positives = 199/529 (37%), Gaps = 39/529 (7%)

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTK 353
           +S +   + S                +     +  P     +   G + + NPS   +  
Sbjct: 7   SSTQKKRHPSISRRLRNHIQDRSLTEMYASLFEHNPDSIISLNLEGVILHINPSAERILG 66

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
           Y S++ +E     S L       + +  + V+    +         + +I       L +
Sbjct: 67  YTSLE-LEQKNITSIL-------EAHISEQVLQNIKNTETDNQQEYILSICHKNGFLLDV 118

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
                    Q         ++P +   RI +  ++    +L +++ +    +   + EG 
Sbjct: 119 VTKLVPIFVQNRLTGVYAIMKPLEKSERI-ENMLKESEKRLRTLVNSMPAFVIFKDHEGR 177

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN----HYLTEILSLDLRQTLEKIT 529
            L  N      F +       K  +  ++ N            + E+     RQ L    
Sbjct: 178 WLEANDYALSCFNFHHVPYRGKKDSELIQYNEAYREAFLHCEEVDELAWQ-QRQILHGEE 236

Query: 530 LGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
               +++  L L +    L           +   D++E K+ +  L  ++K+A       
Sbjct: 237 FIIHRDDFDLILSMSKVPLYHPDGSRKGLIVMGRDVTELKETEKLLRKSEKLAVV----- 291

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
               A ++HEIR PLT++ GF  ++      P  N  +  Y + +    + +  I +  +
Sbjct: 292 GQLTAGIAHEIRNPLTSLKGFLTLLL-----PEINEEHKWYIDVMLSEISQMESITSQFM 346

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
            +SK +     L  +  ++   + E ++ +   A    + I     +    I  D   +K
Sbjct: 347 AMSKPQ----VLSIKTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYAHDIQCDGNQLK 402

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           Q+ +NIL NAI   P+GG I I T    +  +++R+ D G G+    + +  +PF     
Sbjct: 403 QVFINILKNAIEAMPNGGNIFIQTKPLEDTFILIRIIDEGCGIPEDRISRLGEPFY---- 458

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
              ++ +GTGLGL +   +++ + GK +I S   KGT+++I  PL  + 
Sbjct: 459 --SLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTIVDIQLPLSSSH 505


>gi|126442556|ref|YP_001062929.1| two-component sensor kinase protein [Burkholderia pseudomallei 668]
 gi|126222047|gb|ABN85552.1| two-component sensor kinase protein [Burkholderia pseudomallei 668]
          Length = 723

 Score =  299 bits (765), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 96/632 (15%), Positives = 207/632 (32%), Gaps = 26/632 (4%)

Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE 245
             R   D  A   + D          +     ++ +     +            + S   
Sbjct: 93  EIRKQFDALATLVQGDAVQQQRLATLRMLLEKKQHELAATIELRKTEGFDAAQAIVSSDA 152

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
                D           T ++     ++                G L      SF Y+  
Sbjct: 153 GKIFMDRARVMVNEMEATVQQQLRTLRDRARATRDIAIGVGLASGLLTLAVCVSFGYVMR 212

Query: 306 RNHPSLSAYFD---EGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIE 361
           R     +A      E   L   T+             G + + N     +T   +   + 
Sbjct: 213 RLLLVEAAAAHDLFEQRELLHVTLASIGDGVIATDVGGRITFFNRVAEEMTALCTDAVVG 272

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                  L      +      P  +    R   +       +  +    L +        
Sbjct: 273 QPIEQ-VLTFRHAATQRVIDNPARVAVERRRTASLPPHTRFVGRSGGE-LPVDGNAAPTF 330

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
           +   + +    +  +  +    + +  +        +EA    + ++ R+G I+  N   
Sbjct: 331 DANGKLVGAVLVVRDVSERERAEERFRLA-------VEAAPTAMIMVGRDGRIVLVNSQA 383

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLL 539
            KLFGY   D++     + + +   +    +          + +   +   G  ++    
Sbjct: 384 EKLFGYARGDMIGHGIDMLVPERFRAGHWAHRDAFFGSPDARPMGEGRDLFGLRRDGSEF 443

Query: 540 SLRIIIKKLPFSSCYSLT--MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
            + I +  +  S    +   + DI+  K+ + +L    +   + +     F    SH+++
Sbjct: 444 PVEIGLNPITTSEGAFVLCSIADITARKRAELELRRRSEELARSNQDLEQFAYVASHDLQ 503

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
            PL A+ G  ++++ +  G L + R  E+  +       +  +++DLL  S++  G++  
Sbjct: 504 EPLRAVAGPLQLLQRRYQGQL-DARADEFIGHAVDGATRMQSLIDDLLSYSRV--GRLED 560

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
              PV  +  + EA+  +     E    +       +P +      +  +  N++ NAI 
Sbjct: 561 ARRPVDCEHVLDEALRNLSAAIRESGAQVTHD---PLPTVHGIEAQLVLLFQNLIGNAIK 617

Query: 718 FTPSGGQIIIST-THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
           F        I    HT ++  +LRVRD G+G+     E+    F ++    +    GTGL
Sbjct: 618 FRGKDRVARIHLEAHTRDDAWLLRVRDNGIGIDPQYFERIFLIFQRLH--TRREYPGTGL 675

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           GL L K +V+ + G+ ++ S P +GT      
Sbjct: 676 GLALCKRIVEHHGGRIFVESEPGQGTTFSFTL 707



 Score = 51.2 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 27/308 (8%), Positives = 67/308 (21%), Gaps = 25/308 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI----GDLLKRQNTWY 144
            D  G +   +    +        ++G  +  V    H      I       ++R+ T  
Sbjct: 246 TDVGGRITFFNRVAEEMTALCTDAVVGQPIEQVLTFRHAATQRVIDNPARVAVERRRTAS 305

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNR---VDNDPRALGKRLD 201
                  +  +   +P+D  A P +  N +  G     +V          +   L     
Sbjct: 306 LPPHTRFVGRSGGELPVDGNAAPTFDANGKLVGA--VLVVRDVSERERAEERFRLAVEAA 363

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
                +         V  +   +F            + +        H          P 
Sbjct: 364 PTAMIMVGRDGRIVLVNSQAEKLFGYARGDMIGHGIDMLVPERFRAGHWAHRDAFFGSPD 423

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
                            + +++  +     +  +       L      +     +     
Sbjct: 424 ARPMGEGR--DLFGLRRDGSEFPVEIGLNPITTSEGAF--VLCSIADITARKRAELELRR 479

Query: 322 TPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
             E + +                   F  +  +   + +    G   LL        +A 
Sbjct: 480 RSEELARSNQDL------------EQFAYVASHDLQEPLRAVAGPLQLLQRRYQGQLDAR 527

Query: 382 KPVMLYRS 389
               +  +
Sbjct: 528 ADEFIGHA 535



 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/353 (9%), Positives = 76/353 (21%), Gaps = 19/353 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL----KRQNTWY 144
           +   G +  ++ +  K  G     MIG  +  +        +    D        +    
Sbjct: 370 VGRDGRIVLVNSQAEKLFGYARGDMIGHGIDMLVPERFRAGHWAHRDAFFGSPDARPMGE 429

Query: 145 GKTTL-WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
           G+       +G+    P+++   PI +    F        +             +R  ++
Sbjct: 430 GRDLFGLRRDGS--EFPVEIGLNPITTSEGAFV----LCSIADITARKRAELELRRRSEE 483

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
            +  ++  +  + V         +    P   ++ +     +  A +      +    + 
Sbjct: 484 LARSNQDLEQFAYVASHDLQEPLRAVAGPLQLLQRRYQGQLDARADEFIGHAVDGATRMQ 543

Query: 264 SEESSLPEQEDFHTINLNQYTK---KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
           S    L        +   +            L+N S    E  +   H  L         
Sbjct: 544 SLIDDLLSYSRVGRLEDARRPVDCEHVLDEALRNLSAAIRESGAQVTHDPLPTVHGIEAQ 603

Query: 321 LTPETVDKCPIPFFVYSHGN-----LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
           L     +                  L         L + +             +    + 
Sbjct: 604 LVLLFQNLIGNAIKFRGKDRVARIHLEAHTRDDAWLLRVRDNGIGIDPQYFERIFLIFQR 663

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
                  P                   I    E     TF          E  
Sbjct: 664 LHTRREYPGTGLGLALCKRIVEHHGGRIFVESEPGQGTTFSFTLSRPGADETR 716


>gi|83950383|ref|ZP_00959116.1| two-component hybrid sensor and regulator [Roseovarius nubinhibens
           ISM]
 gi|83838282|gb|EAP77578.1| two-component hybrid sensor and regulator [Roseovarius nubinhibens
           ISM]
          Length = 540

 Score =  299 bits (765), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 95/516 (18%), Positives = 191/516 (37%), Gaps = 35/516 (6%)

Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYK 355
                   + R    L            + +++  +     S G +   N +F     ++
Sbjct: 41  VAFRRGSETMRLREHLLKSQQAELAFREKAINEHAMILTTDSEGKILSVNENFTNALGFR 100

Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
           +          S L      +D+   + +    +     +    + +          +  
Sbjct: 101 A-----NGLRGSELRHFLGAADSAPYEAIARQTNGGDVWSGDLEVLSAS---GKLRILRT 152

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GII 474
                 +    ++       +    R  +++      QL   L+   + + +++ + G I
Sbjct: 153 TAVPLFSTGMGHLKTMYFCNDVTKQRSGEQE-----RQLTRCLQLLPEDVYLVDMDSGKI 207

Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
           L  N A  +   +P  +         L     + +     +    D  +TL+ +T     
Sbjct: 208 LFMNDAALRRMRWPEGEYRTYG-ADRLPDPFGAAIRDLCAQEAPTDASETLQFLTECH-- 264

Query: 535 EEKLLSLRIIIKKLPFSS-CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
               +   + I +       +   + DIS+  + +                + +F++ ++
Sbjct: 265 -GVAMEANVQIIETVDGQKRFVAVLRDISQRMEAEAT--------------RRNFMSMMT 309

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HE+RTPLT+I G  +++     GPL  P  +      + +G  +L +VND+LD+SK+E+G
Sbjct: 310 HELRTPLTSIKGAVQLLTAGTAGPL-EPGVMSLLRIAENNGERLLGLVNDILDLSKLEAG 368

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713
           KM      + L   + EAI     YA    + +R         +  D   + Q+  N++S
Sbjct: 369 KMEFTMGRMDLRALIDEAIESDAGYATGLGVTLRCKSPETPLWVTGDKGRLLQVLTNLMS 428

Query: 714 NAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
           NA  F+ +G Q+ IS      + + + + D G G+         +PF Q     + R +G
Sbjct: 429 NAAKFSETGSQVEISARPN-GDMIRVAISDRGPGIPEAARAGLFEPFKQAGAQDKGRIKG 487

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           TGLGL + KA+V+ + G+    S   KGT      P
Sbjct: 488 TGLGLTIVKAIVEHHDGRVDFVSELGKGTTFYFDLP 523



 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/237 (10%), Positives = 55/237 (23%), Gaps = 19/237 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            D+ G +  ++E     +G  A  + G  L          P   I       + W G   
Sbjct: 80  TDSEGKILSVNENFTNALGFRANGLRGSELRHFLGAADSAPYEAIARQTNGGDVWSGDLE 139

Query: 149 LWPIEGTNLYVPIDLAALPIYSRN-REFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
           +    G    +     A+P++S              V   R     R L + L      +
Sbjct: 140 VLSASGKLRILRTT--AVPLFSTGMGHLKTMYFCNDVTKQRSGEQERQLTRCLQLLPEDV 197

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV----SSLTEYYAHKDDVLKTEKYPLLT 263
                 +         +F   +    +R          +          +         T
Sbjct: 198 ------YLVDMDSGKILFMNDAALRRMRWPEGEYRTYGADRLPDPFGAAIRDLCAQEAPT 251

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
               +L    + H + +           +         +++     S     +    
Sbjct: 252 DASETLQFLTECHGVAMEANV------QIIETVDGQKRFVAVLRDISQRMEAEATRR 302


>gi|78355304|ref|YP_386753.1| histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans
           str. G20]
 gi|78217709|gb|ABB37058.1| histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans
           str. G20]
          Length = 847

 Score =  299 bits (765), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 118/712 (16%), Positives = 236/712 (33%), Gaps = 50/712 (7%)

Query: 117 RLCDVSDILHIDPNNHIGDLLKRQNT------WYGKTTLWPIEGTNLYVPIDLAALPIYS 170
           R   ++D   I     +   L+ +              LW +E  N  +   L+     +
Sbjct: 4   RWRRLADTPVIMAYCQLTLCLQTREALMMYAVHALLKALWRLEKENETLRSALSGTQHAA 63

Query: 171 RNREFSGFRGFGI-VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS 229
           + R   G     + +     +      GK+ D       ++   H S    +    +   
Sbjct: 64  QARPLGGLPYAEVALRPGAGEQTGGEAGKQADTSPEMGRDLYVSHVSDALLELAGMTAPL 123

Query: 230 PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYF 289
             P          L         VL +    + T++  SLP       + +         
Sbjct: 124 KDPADIFTAVPWQLALLCTQSTPVLVSIPLRIRTAQGGSLP------VLAMPLPLPHHDS 177

Query: 290 GTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSF 348
              + + +     +            ++G NLT    D      +     G   +AN + 
Sbjct: 178 AASRTSWRFMVLPVDGVP-------CEDGINLTRAMADNMIDMLWAKDTKGRYLFANRAI 230

Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS-ARLHTIQWNR 407
                     D      +        L   +    + L   D   ++    R       +
Sbjct: 231 CEKLLCCDGIDPLGRDDIYFARRQRALGWQHTFGELCLNSDDIVLLSQKPGRFVEDGLVQ 290

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
              LA+        +     +   G   +    +  +  +     +   +L ATSD I  
Sbjct: 291 NKYLALEVQKSPLYDPRGVLIGTVGTGRDITRQKEAEEALRRSEHRFGMVLRATSDIIWA 350

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
            +     ++      K+        +++   + +       +  +++          L+ 
Sbjct: 351 YDIAKDTMTC----GKMDSPDPFRAMQECHCLPVHHEELKDIKDHVSRFFREGGD-NLQH 405

Query: 528 ITLGSTKEEKLLSLRIIIKKLP-FSSCY----SLTMHDISEWKQEKNKLSHAKKIAEKES 582
               +  +   + L    + +             +  DI+E K  +     A K      
Sbjct: 406 EFNLTAHDGNTIWLLSRGRVMEFDEKGAPLLAVGSHTDITELKTAQVAAEAAAKAKSAFL 465

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
           +        +SHEIRTPL  ++G  +++ N+    + +P+ +        SG  +L I+N
Sbjct: 466 A-------TMSHEIRTPLNGVLGMLQILGNE----ITDPKPLRLTRTALDSGRKLLAIIN 514

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADL 701
           D+LD S I++G   L   P+ + E V+  ++       +K + +       +P +L  D 
Sbjct: 515 DILDFSTIDAGAAPLDHAPLRIRETVNSVLANFSEEVRQKGLTLTAVVDRAVPDVLVGDE 574

Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTH-----TSNEEVILRVRDTGVGMTNYELEKA 756
             ++QI  N++ NA+ FT  G  + +              +++ V DTG+GM    L + 
Sbjct: 575 SRIRQILFNLVGNAVKFTREGS-VRVDVLLLTAPADEEARLLVTVEDTGIGMEAEMLPRI 633

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
             PF Q+  + + R +GTGLGL + +++V    G   + STP  GT I    
Sbjct: 634 FDPFFQVDGTYRRRYQGTGLGLGIVRSLVSMMNGNISVESTPGVGTTICCSL 685


>gi|86137741|ref|ZP_01056317.1| sensory box sensor histidine kinase/response regulator [Roseobacter
           sp. MED193]
 gi|85825333|gb|EAQ45532.1| sensory box sensor histidine kinase/response regulator [Roseobacter
           sp. MED193]
          Length = 810

 Score =  299 bits (765), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 111/643 (17%), Positives = 223/643 (34%), Gaps = 33/643 (5%)

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY 246
             V  +   L   L        ++ +G  +V   + D+   +       M     S   +
Sbjct: 23  ADVLREASQLQSSLKGALQADIQLVRGLVAVLSTEPDMAQARF-TELGEMVMGTESGISH 81

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
            A   D++ +  YPL  +E +   +           Y  +     +     +  +     
Sbjct: 82  VAAVPDLVISMIYPLSGNEAALGLDYNQNDAQREAAYKVRDSGEMVLAGPVQLVQGGEAF 141

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG-- 364
                              +        +Y        N    +    +    ++ A   
Sbjct: 142 IGRFPVFTGAGENRRFWGILSSVMKAGQLYEQHGFNDLNLGIEVALMGQDGMGLDGAQFF 201

Query: 365 GLSTLLDAPKLSDNNAI---KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
           G  ++     ++ +  +     +M  R      A  A     +     +  +  IP   A
Sbjct: 202 GDPSIFADNPVTLDIPLPVGSWMMAARPKGGWSARKANPWPWRLVVFIAGGLIVIPIFMA 261

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
            +                 +  +R++EI   +L   ++ +  GI  +N        ++ +
Sbjct: 262 GRLSAARRDV-----IRTLKRRERQLEILSRRLEIAVDISKIGIWELNTRSNETLWDQNL 316

Query: 482 SKLFGY-PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
             ++ Y     I    +  +L         + +          T +   +  + E + + 
Sbjct: 317 RSIYDYKDEGPIEFGTWESYLHPEDRQQAIYEMRRASHAGGSFTSQFRIVLPSGEVRHIR 376

Query: 541 LRIIIKKLPFSS-CYSLTMHDISEWKQEKN--------------KLSHAKKIAEKESSHK 585
                               D++                      L+ AK  AE     K
Sbjct: 377 SMGTAYADSAGWLRMLGVNLDVTRDVHLHEKLIEANATLLQRNNDLTDAKVAAESADRAK 436

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
           S+FLA +SHEIRTP+  I+G +E++     G        EY   I  S N +L I+ND+L
Sbjct: 437 SEFLANMSHEIRTPMNGILGMAELMSEADLGA----EEREYLTTIQDSSNALLKIINDIL 492

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSV 704
           D+S++E+G++ +      L   V+ A++L++  A EK + +   FA N+P  +  D   +
Sbjct: 493 DLSRLEAGRLAISPVDFDLRNCVAGAVNLLRPKAREKGLWMSVDFAENLPEQVYGDDGRL 552

Query: 705 KQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
           +QI +N++ NA+ FT  GG  + ++        + + V DTG+G+++ + E     F Q 
Sbjct: 553 RQILVNLIGNAVKFTSEGGVDVKVTCDEQDPYSLEIAVEDTGIGISDSQAEYIFDRFAQA 612

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
             +      GTGLGL ++  +     G   +     +G+   +
Sbjct: 613 DAAITRAFGGTGLGLTISSILAKRMGGGIELCRAREEGSCFRL 655


>gi|320355414|ref|YP_004196753.1| multi-sensor signal transduction histidine kinase [Desulfobulbus
           propionicus DSM 2032]
 gi|320123916|gb|ADW19462.1| multi-sensor signal transduction histidine kinase [Desulfobulbus
           propionicus DSM 2032]
          Length = 608

 Score =  299 bits (765), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 104/587 (17%), Positives = 203/587 (34%), Gaps = 39/587 (6%)

Query: 235 RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294
            ++ +   +    A             +         +      N            L +
Sbjct: 44  EIRERALLIEPTIATLSRGEDRPFQDFVRQTGRRAATRITVIANNGLVRADSNEDHNLMD 103

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLL-TK 353
           N     E +      +  +                P+                 L L   
Sbjct: 104 NHATRPEVVPALAGETGYSLRHSRTLGESMLYAAIPVRLGEEEL-------RGALRLAIA 156

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
              V+ +        L     ++   A+  +   R     +    R             +
Sbjct: 157 ITPVEIMLATLHKKLLAIGLAVAVLAALLSLYSARRISRPLEEIKRGAEQLTKGRIDQLV 216

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
                  + +            E ++ RI       +  QL ++  + +D +  I+ +  
Sbjct: 217 KINSEHMSAEMAGLAGSINQMAEQINRRIRIII--QQRNQLEAVFSSMADAVVAIDADKK 274

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
           I+  N+A + LFG P E +  K     +       +   +   L+ +  Q  +K+TL + 
Sbjct: 275 IIRMNQAAAALFGLPSEGVKGKAVQGVIR---NPYLLEMVDCTLAHNTPQ-EQKVTLFNG 330

Query: 534 KEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
            +  LL    +  +          L M+D+++  + +              + + DF+A 
Sbjct: 331 TDPILLDTHAVPLRDEDDRSMGVLLVMNDLTKLNRLE--------------NIRQDFVAN 376

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           VSHE++TP+TAI G+ E + +       N R   + + + R  N +  IV+DLL +S+IE
Sbjct: 377 VSHELKTPITAIKGYVETLLDGALEDQDNAR--RFLSIVVRQANRLDAIVDDLLTLSRIE 434

Query: 652 --SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709
               + ++      +   +  A+    + A+EK I+I+            +   ++Q  +
Sbjct: 435 DREQRRDISLTVAEVGPVLESALQTCAVQADEKGIIIQVESDEE-WYAPINQPLLEQAVI 493

Query: 710 NILSNAIHFTPSGGQIIISTT----HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           N+L NAI ++P G  I +           E V L V D G G+    L +  + F +   
Sbjct: 494 NLLGNAIAYSPQGSLITLRCQGSRNRQGEEFVHLSVIDNGPGIAKEHLPRLFERFYRCDK 553

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
           ++     GTGLGL +AK +  A+ G   + S+  KG+   +I P   
Sbjct: 554 ARSRDQGGTGLGLAIAKHIAQAHNGTVEVESSLGKGSTFTLILPAAP 600


>gi|309792218|ref|ZP_07686690.1| multi-sensor signal transduction histidine kinase [Oscillochloris
           trichoides DG6]
 gi|308225759|gb|EFO79515.1| multi-sensor signal transduction histidine kinase [Oscillochloris
           trichoides DG6]
          Length = 726

 Score =  299 bits (765), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 103/642 (16%), Positives = 228/642 (35%), Gaps = 41/642 (6%)

Query: 180 GFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK 239
           G  +V+V R       +       +       +   ++ +    +               
Sbjct: 113 GLKVVYVWRSFLPVVLVPTLFGPLYLAASYRSQADFALLRADQVLAFWSLIAASCLFVCL 172

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFH-TINLNQYTKKQYFGTLQNNSKE 298
           + +L E    + D L  +        E+ + E E  +  + +    ++    +L+  +  
Sbjct: 173 LVALAERRLRRADDLALQLVQTRVEHEARVAELESSNTDLRVRIRRQQSLEESLRAITGS 232

Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSV 357
                                 ++   +       F +   G    A   +      + V
Sbjct: 233 LSLDEVLSQILDSMLQMLGAPRVSAAGLSLVSGAGFTHRTLGMGDVAAQMWAQPLAQQVV 292

Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
                      LLDA  +    A     L     +        H I      ++  T   
Sbjct: 293 QSHAPVVVGDALLDADWVHLQRAGVLSAL-----SVPLIDPHNHVI---GALTVVSTQRH 344

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
                +       +      +       ++E +   L +++    DG+ +++ +G ++  
Sbjct: 345 AFTPTEARHLTSFSIQASVAIQNAELHTRLEHQQAMLQAVVRDIGDGLIVVDAQGAMVIA 404

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL-GSTKEE 536
           N    +                    +        +++ L    +  +++    G   ++
Sbjct: 405 NPVAYQTLQKSDA-----------HGDRLRDDLDRMSQELRAHPQALIQREVHFGEDDQQ 453

Query: 537 KLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
           +   +   +            +L +HDIS+ K ++ +                +F++ VS
Sbjct: 454 RAYQIFASLVHTEADDDASYVALVIHDISDQKLQERRQF--------------EFISMVS 499

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HE+R PL  + GF +V+   + GPL N    E+    D   + +   + +LL+ +++ESG
Sbjct: 500 HELRNPLNTLNGFLKVVLQGKAGPL-NELQQEFLGLADGQADALKGRITELLEYNRLESG 558

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713
           ++ L  +   L + +    +  Q+ A +  + I T+   NIP +L D   + Q+  N++ 
Sbjct: 559 RLRLQPQWSDLADLLLRTSTRFQIQAEQFGLTIETAIPTNIPEVLMDPERIGQVLTNLIE 618

Query: 714 NAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
           NA+  TP+GG+I +         V+++V DTGVG+   + EK    F ++ ++  + G  
Sbjct: 619 NAMKATPAGGKIALRALVQEQ-YVLVQVADTGVGIPEEQREKIFSRFYRLEHTSSLHGVH 677

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            GLGL + + +V+ + G+ ++ S  A+G+      PL     
Sbjct: 678 LGLGLSICQQIVEGHNGRIWVESAVAQGSCFNFTLPLVRREQ 719


>gi|254472519|ref|ZP_05085919.1| sensory/regulatory protein RpfC [Pseudovibrio sp. JE062]
 gi|211958802|gb|EEA94002.1| sensory/regulatory protein RpfC [Pseudovibrio sp. JE062]
          Length = 729

 Score =  299 bits (765), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 91/370 (24%), Positives = 159/370 (42%), Gaps = 16/370 (4%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           ++     +  SIL+A    +   +  G++LS N A  + F       + K   +   ++ 
Sbjct: 96  QLREADDRHRSILDALGAIVIRCDSSGLVLSINDAGKRNFPTGFGIEVGKAIHLPYAEDF 155

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS-LTMHDISEW 564
                    E+       T +              LR+ I+     +      + D+++ 
Sbjct: 156 TP-------ELEESAAGTTEDVALRTKHGTRWYSLLRLSIRDGSGGAPIIQWILTDVTDR 208

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           +  + KL   +  A   S  KS FLA VSHEIRTPL  ++G ++++              
Sbjct: 209 RHAEQKLRADRDHAANASEAKSRFLAMVSHEIRTPLNGVLGMADLL----DDTSTTAEQQ 264

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
            Y N I  SG+ +L +++++LD SKIE+GK+ L    V L   V   + L+   A+ K +
Sbjct: 265 NYINAIKTSGSTLLMLIDEVLDYSKIEAGKLELETGAVELTPLVERVVELLSPKAHAKGL 324

Query: 685 LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ---IIISTTHTSNEEVILR 740
            I +  A  +P  I +D   ++Q+  N++ NAI FT  GG    + +S     N  +   
Sbjct: 325 QIGSYIAPEVPETIQSDPARLQQVLYNLVGNAIKFTEQGGVSLVLQVSQDSAGNHLLEFA 384

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V+DTG GM      +  + F Q    +  + +G GLGL ++K + +       + S    
Sbjct: 385 VKDTGPGMDEVTAARIFREFEQGEYGRDRKFDGAGLGLAISKRLAELMGSSLTVQSQLGC 444

Query: 801 GTLIEIIFPL 810
           G+   +  PL
Sbjct: 445 GSTFLLEMPL 454


>gi|37523730|ref|NP_927107.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
           7421]
 gi|35214735|dbj|BAC92102.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
           7421]
          Length = 342

 Score =  299 bits (765), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 77/361 (21%), Positives = 148/361 (40%), Gaps = 37/361 (10%)

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
             IL+    G+ + +REG +L  N A+  L G    D+       +  +         + 
Sbjct: 5   QEILDCLPFGLVVTDREGRVLLWNDAMESLTGTKAADVQGGWIQCWSAE---------VA 55

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA 574
           EI +                EE+  SL +            + + D              
Sbjct: 56  EIGTQG-------HVFLRNGEEQSFSLSVRTAVSREGHRVWVFIPD-------------- 94

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
               ++    ++DF++ VSHE+RTPLT+I GF + +       L   ++  +   I    
Sbjct: 95  --SRQELDQAQTDFVSTVSHELRTPLTSIKGFVDTLLRS-GSQLSEAQHRRFLRIIKNQA 151

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
           + +  +V D+L +S+I+SG++    + + L E +      +      +R  +R      +
Sbjct: 152 DRLTRLVEDILTVSRIQSGRLKNLPQRLDLGEMIDRVFENLAQKYAAQR--MRRELPGAL 209

Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH--TSNEEVILRVRDTGVGMTNYE 752
           P + AD   ++QI  N++ NA+ ++  G  + +S          + + VRD G+G+    
Sbjct: 210 PEVWADQDRLEQILTNLIDNALKYSEHGAPVCVSADLDPEDRNVLWIAVRDLGIGIPEEN 269

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
           L++    F +I +      EGTGLGL + K++V++  G  ++ S    G+   +  P   
Sbjct: 270 LDQIFNRFSRIDSPLTREREGTGLGLYITKSLVESLGGTIHVESRYGVGSTFTVSLPAVQ 329

Query: 813 T 813
            
Sbjct: 330 A 330



 Score = 40.0 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 28/216 (12%), Positives = 59/216 (27%), Gaps = 20/216 (9%)

Query: 323 PETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
            E +D  P    V    G +   N +   LT  K+ D             + ++++    
Sbjct: 5   QEILDCLPFGLVVTDREGRVLLWNDAMESLTGTKAADVQGGWIQCW----SAEVAEIGTQ 60

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD-- 439
             V L   +    + S R   +               ++ +Q   +              
Sbjct: 61  GHVFLRNGEEQSFSLSVR-TAVSREGHRVWVFIPDSRQELDQAQTDFVSTVSHELRTPLT 119

Query: 440 ---------TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR-AVSKLFGYPV 489
                     R   +  E +  +   I++  +D +  +  +  IL+ +R    +L   P 
Sbjct: 120 SIKGFVDTLLRSGSQLSEAQHRRFLRIIKNQADRLTRLVED--ILTVSRIQSGRLKNLPQ 177

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
              L +      E          +   L   L +  
Sbjct: 178 RLDLGEMIDRVFENLAQKYAAQRMRRELPGALPEVW 213


>gi|333008592|gb|EGK28060.1| phosphate regulon sensor kinase PhoR [Shigella flexneri VA-6]
          Length = 431

 Score =  299 bits (765), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 73/427 (17%), Positives = 150/427 (35%), Gaps = 37/427 (8%)

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             +L       I     L  + W     L +         +        G+    +  + 
Sbjct: 33  WFLLASVTGLLIWHFWNLLRLSW----WLWVDRSMTPPPGRGSWEPLLYGLHQMQLRNKK 88

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            +R++   + +  S  E+  D + +   EG I   N    ++ G    +   +     L 
Sbjct: 89  RRRELGNLIKRFRSGAESLPDAVVLTTEEGGIFWCNGLAQQILGLRWPEDNGQNILNLLR 148

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
               +               +   +         + L +R++           +   D++
Sbjct: 149 YPEFTQYL----------KTRDFSRPLNLVLNTGRHLEIRVMPYTHKQ---LLMVARDVT 195

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  Q +                + +F A VSHE+RTPLT + G+ E++  Q        +
Sbjct: 196 QMHQLEG--------------ARRNFFANVSHELRTPLTVLQGYLEMMDEQPLEGAVREK 241

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                + +      +  +V  LL +SKIE+    L  E V +   +       Q  + +K
Sbjct: 242 A---LHTMREQTQRMEGLVKQLLTLSKIEASPTQLLNEKVDVPMMLRVVEREAQTLSQKK 298

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           +        N + ++  +   ++    N++ NA++ TP G  I +      +      V 
Sbjct: 299 Q-TFTFEIDNGL-KVSGNEDQLRSAISNLVYNAVNHTPEGTHITVRWQRVPHG-AEFSVE 355

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G G+    + +  + F ++  ++  +  G+GLGL + K  V+ +  +  I ST  KGT
Sbjct: 356 DNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHAVNHHESRLNIESTVGKGT 415

Query: 803 LIEIIFP 809
               + P
Sbjct: 416 RFSFVIP 422


>gi|331681793|ref|ZP_08382426.1| phosphate regulon sensor kinase PhoR [Escherichia coli H299]
 gi|331080995|gb|EGI52160.1| phosphate regulon sensor kinase PhoR [Escherichia coli H299]
          Length = 431

 Score =  299 bits (765), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 73/427 (17%), Positives = 151/427 (35%), Gaps = 37/427 (8%)

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             +L       I     L  + W     L +         +        G+    +  + 
Sbjct: 33  WFLLASVTGLLIWHFWNLLRLSW----WLWVDRSMTPPPGRGSWEPLLYGLHQMQLRNKK 88

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            +R++   + +  S  E+  D + +   EG I   N    ++ G    +   +     L 
Sbjct: 89  RRRELGNLIKRFRSGAESLPDAVVLTTEEGGIFWCNGLAQQILGLRWPEDNGQNILNLLR 148

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
               +               +   +         + L +R++           +   D++
Sbjct: 149 YPEFTQYL----------KTRDFSRPLNLVLNTGRHLEIRVMPYTHKQ---LLMVARDVT 195

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  Q +                + +F A VSHE+RTPLT + G+ E++  Q        +
Sbjct: 196 QMHQLEG--------------ARRNFFANVSHELRTPLTVLQGYLEMMDEQPLEGAVREK 241

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                + +      +  +V  LL +SKIE+    L  E V +   +       Q  + +K
Sbjct: 242 A---LHTMREQTQRMEGLVKQLLTLSKIEAAPTQLLNEKVDVPMMLRVVEREAQTLSQKK 298

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           +        N + ++  +   ++    N++ NA++ TP G  I +      +      V 
Sbjct: 299 Q-TFTFEIDNGL-KVSGNEDQLRSAISNLVYNAVNHTPEGTHITVRWQRVPHG-AEFSVE 355

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G G+    + +  + F ++  ++  +  G+GLGL + K  V+ +  + +I ST  KGT
Sbjct: 356 DNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHAVNHHESRLHIESTVGKGT 415

Query: 803 LIEIIFP 809
               + P
Sbjct: 416 RFSFVIP 422


>gi|254421196|ref|ZP_05034914.1| PAS fold family [Synechococcus sp. PCC 7335]
 gi|196188685|gb|EDX83649.1| PAS fold family [Synechococcus sp. PCC 7335]
          Length = 858

 Score =  299 bits (765), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 112/616 (18%), Positives = 206/616 (33%), Gaps = 71/616 (11%)

Query: 239 KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE 298
           +   L E      D L++    L  S E     Q+DF    +    +     T Q     
Sbjct: 268 QELELQESALKVQDSLESRTQELEQSIEWQSWLQDDFSNQAVANLWEISDIETAQIPQAI 327

Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPET-VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSV 357
           +      R    L               + + P+       G L  A+P        +S 
Sbjct: 328 ANALAHARIRSLLIVKLTSQNQFLGYLSLFRQPVDIETVWAGRLDEADPR--QQRPRQSF 385

Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
           +  +           P+                      S    T  + +   L      
Sbjct: 386 EAWQEIRKNQAHAWEPRDIGLVQDLADRFA---------SVIYQTQLYQKIQLLNADLEQ 436

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL-------CSILEATSDGIAIINR 470
                          +  E  +       ++     L         IL+A  +GI  I+ 
Sbjct: 437 RVLERTAELQATNQHLSQEIAERERALAALQEARDSLKRLSHQNELILKAAGEGIYGIDP 496

Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE-----ILSLDLRQTL 525
           +G I+ +N A +K+ GYP   +  K     L    P    +   +      L       +
Sbjct: 497 KGQIVFSNPAAAKILGYPNAALAGKFMHDLLNPTKPQGDRYRWQQSPIFNTLRYGQTHHV 556

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKES 582
                    +     +  +   +  S       +   DI+E +                 
Sbjct: 557 TGDFFERQ-DGSRFPVEYVSTSIRESGNTIGAVVVFQDITERQ--------------AVD 601

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
           S K +F+A VSHE+RTPLT+I      +  Q    +   +          + N ++ +VN
Sbjct: 602 SMKDEFIAVVSHELRTPLTSIRAAL-GLLAQSQIEISPAKQQRMIEIASSNTNRLVRLVN 660

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702
           D+LD+ +I+ GK+ L+ +  +L   +++A   ++  A+ + I +  S ++    +  D  
Sbjct: 661 DILDVERIKLGKIVLNKQICNLSTIITQATDEMRAMADNRSIHL--SASSLSIELWVDPD 718

Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV------------------------- 737
            + Q   N+LSNAI F+P    + IS     +++V                         
Sbjct: 719 KIIQTIANLLSNAIKFSPVNSTVEISAQQIRSDDVSRIQKHLSAKGKSAIEAGLEIGESV 778

Query: 738 -ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
            ++ V+D G G+   +LE   + F Q+  S +    GTGLGL + +++V  + G+ +  S
Sbjct: 779 LLVMVKDAGRGIPKDKLEAIFEQFEQLNTSDEAHQGGTGLGLAICRSIVQRHHGEIWAQS 838

Query: 797 TPAKGTLIEIIFPLYD 812
               G+      P+ D
Sbjct: 839 ELNSGSTFYFTLPIGD 854



 Score = 40.8 bits (94), Expect = 0.87,   Method: Composition-based stats.
 Identities = 13/114 (11%), Positives = 31/114 (27%), Gaps = 12/114 (10%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL------LKR 139
            + ID  G +   +    K +G     + G  + D+ +      + +          L+ 
Sbjct: 491 IYGIDPKGQIVFSNPAAAKILGYPNAALAGKFMHDLLNPTKPQGDRYRWQQSPIFNTLRY 550

Query: 140 QNT-WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192
             T           +G+    P++  +  I   +    G     +         
Sbjct: 551 GQTHHVTGDFFERQDGS--RFPVEYVSTSIR-ESGNTIGA--VVVFQDITERQA 599


>gi|229917934|ref|YP_002886580.1| histidine kinase [Exiguobacterium sp. AT1b]
 gi|229469363|gb|ACQ71135.1| histidine kinase [Exiguobacterium sp. AT1b]
          Length = 613

 Score =  299 bits (765), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 114/565 (20%), Positives = 214/565 (37%), Gaps = 52/565 (9%)

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
            P  +     N     KK+   T+ N SK +   L +RN         E        ++K
Sbjct: 69  RPLIKRMADQNSRLKAKKEKLETVLNESKLNEINLQYRNELIEVLASKESLFDYSSVIEK 128

Query: 329 CPI-------PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
             +          +   G +    P        +  +D + +    +LL    +      
Sbjct: 129 IVLLTKSEFGALLLTKDGEITSVVPK-------EMTEDQQESLKKDSLLLKRVMISKLPA 181

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNR-------ENSLAMTFIPFEKANQFPENMPQNGIE 434
                                I                  +     A++  E     G  
Sbjct: 182 ATSKRVVDALHTYPYYIYETVIPIMDPSDNSLIGCLYLARYDEQYDASEKSELNAFAGQL 241

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF--------G 486
              +      R+M+ +  +   ++ +  + I  +N E   +  NRA  ++F        G
Sbjct: 242 AISLLRMQLYRQMQQDRKETAQLINSVREAILYVNYEDDTVVGNRAFIRMFDDLHFDYKG 301

Query: 487 YPVEDILRKPFTVFLEQNTP-SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI-I 544
           Y     +        E+         Y   + + D  +  + +T+   + +  + L    
Sbjct: 302 YEELSAIDIDIEQLAERVDQHEQFVRYFERVFTQDPPE--DGLTISIDQGDCFIQLYAES 359

Query: 545 IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
           + +        L + D++                 +    KS+ ++ VSHE+RTPL++I 
Sbjct: 360 VYRDRKLRGTMLVLRDVT--------------AETEIDRMKSELVSTVSHELRTPLSSIY 405

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           GF+E++ ++    L   R   Y   I      +  +VND LD+ K+ESGK    +EPV L
Sbjct: 406 GFTELMLSRD---LKESRRELYLKTIHDEAKRLSYLVNDFLDLQKMESGKQAFEWEPVDL 462

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724
            + V+++++  Q   +   + I      +   I ADL  ++Q+  N+LSNAI ++P GG 
Sbjct: 463 YQLVTDSVAFYQETTDRHELFIDADTEQDFI-IDADLEGMRQLLGNLLSNAIKYSPDGGN 521

Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
           I++S       EV+++VRD G+G+ +  L      F ++ NS + +  GTGLGL + K +
Sbjct: 522 ILVSLERVDE-EVVMKVRDHGMGIPSASLPHLFGKFYRVDNSDRRKIGGTGLGLAICKEI 580

Query: 785 VDANMGKFYIFSTPAKGTLIEIIFP 809
             A+ G+ ++ S   +G+      P
Sbjct: 581 AKAHEGQLHVESVYGEGSTFICELP 605


>gi|167828470|ref|ZP_02459941.1| two-component sensor kinase protein [Burkholderia pseudomallei 9]
 gi|226199125|ref|ZP_03794687.1| sensory box histidine kinase [Burkholderia pseudomallei Pakistan 9]
 gi|225928900|gb|EEH24925.1| sensory box histidine kinase [Burkholderia pseudomallei Pakistan 9]
          Length = 723

 Score =  299 bits (765), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 96/632 (15%), Positives = 207/632 (32%), Gaps = 26/632 (4%)

Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE 245
             R   D  A   + D          +     ++ +     +            + S   
Sbjct: 93  EIRKQFDALATLVQGDAVQQQRLATLRMLLEKKQHELAATIELRKTEGFDAAQAIVSSDA 152

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
                D           T ++     ++                G L      SF Y+  
Sbjct: 153 GKIFMDRARVMVNEMEATVQQQLRTLRDRARATRDIAIGVGLASGLLTLAVCVSFGYVMR 212

Query: 306 RNHPSLSAYFD---EGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIE 361
           R     +A      E   L   T+             G + + N     +T   +   + 
Sbjct: 213 RLLLVEAAAAHDLFEQRELLHVTLASIGDGVIATDVGGRITFFNRVAEEMTALCADAVVG 272

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                  L      +      P  +    R   +       +  +    L +        
Sbjct: 273 QPIEQ-VLTFRHAATQRVIDNPARVAVERRRTASLPPHTRFVGRSGGE-LPVDGNAAPTF 330

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
           +   + +    +  +  +    + +  +        +EA    + ++ R+G I+  N   
Sbjct: 331 DANGKLVGAVLVVRDVSERERAEERFRLA-------VEAAPTAMIMVGRDGRIVLVNSQA 383

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLL 539
            KLFGY   D++     + + +   +    +          + +   +   G  ++    
Sbjct: 384 EKLFGYARGDMIGHGIDMLVPERFRAGHWAHRDAFFGSPDARPMGEGRDLFGLRRDGSEF 443

Query: 540 SLRIIIKKLPFSSCYSLT--MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
            + I +  +  S    +   + DI+  K+ + +L    +   + +     F    SH+++
Sbjct: 444 PVEIGLNPITTSEGAFVLCSIADITARKRAELELRRRSEELARSNQDLEQFAYVASHDLQ 503

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
            PL A+ G  ++++ +  G L + R  E+  +       +  +++DLL  S++  G++  
Sbjct: 504 EPLRAVAGPLQLLQRRYQGQL-DARADEFIGHAVDGATRMQSLIDDLLSYSRV--GRLED 560

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
              PV  +  + EA+  +     E    +       +P +      +  +  N++ NAI 
Sbjct: 561 ARRPVDCEHVLDEALRNLSAAIRESGAQVTHD---PLPTVHGIEAQLVLLFQNLIGNAIK 617

Query: 718 FTPSGGQIIIST-THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
           F        I    HT ++  +LRVRD G+G+     E+    F ++    +    GTGL
Sbjct: 618 FRSKDRVARIHLEAHTRDDAWLLRVRDNGIGIDPQYFERIFLIFQRLH--TRREYPGTGL 675

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           GL L K +V+ + G+ ++ S P +GT      
Sbjct: 676 GLALCKRIVEHHGGRIFVESEPGQGTTFSFTL 707



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/250 (9%), Positives = 56/250 (22%), Gaps = 13/250 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI----GDLLKRQNTWY 144
            D  G +   +    +     A  ++G  +  V    H      I       ++R+ T  
Sbjct: 246 TDVGGRITFFNRVAEEMTALCADAVVGQPIEQVLTFRHAATQRVIDNPARVAVERRRTAS 305

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNR---VDNDPRALGKRLD 201
                  +  +   +P+D  A P +  N +  G     +V          +   L     
Sbjct: 306 LPPHTRFVGRSGGELPVDGNAAPTFDANGKLVGA--VLVVRDVSERERAEERFRLAVEAA 363

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
                +         V  +   +F            + +        H          P 
Sbjct: 364 PTAMIMVGRDGRIVLVNSQAEKLFGYARGDMIGHGIDMLVPERFRAGHWAHRDAFFGSPD 423

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
                            + +++  +     +  +       L      +     +     
Sbjct: 424 ARPMGEGR--DLFGLRRDGSEFPVEIGLNPITTSEGAF--VLCSIADITARKRAELELRR 479

Query: 322 TPETVDKCPI 331
             E + +   
Sbjct: 480 RSEELARSNQ 489



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 35/353 (9%), Positives = 77/353 (21%), Gaps = 19/353 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL----KRQNTWY 144
           +   G +  ++ +  K  G     MIG  +  +        +    D        +    
Sbjct: 370 VGRDGRIVLVNSQAEKLFGYARGDMIGHGIDMLVPERFRAGHWAHRDAFFGSPDARPMGE 429

Query: 145 GKTTL-WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
           G+       +G+    P+++   PI +    F        +             +R  ++
Sbjct: 430 GRDLFGLRRDGS--EFPVEIGLNPITTSEGAFV----LCSIADITARKRAELELRRRSEE 483

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
            +  ++  +  + V         +    P   ++ +     +  A +      +    + 
Sbjct: 484 LARSNQDLEQFAYVASHDLQEPLRAVAGPLQLLQRRYQGQLDARADEFIGHAVDGATRMQ 543

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYF---GTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
           S    L        +   +            L+N S    E  +   H  L         
Sbjct: 544 SLIDDLLSYSRVGRLEDARRPVDCEHVLDEALRNLSAAIRESGAQVTHDPLPTVHGIEAQ 603

Query: 321 LTPETVDKCPIPFFVYSHGN-----LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
           L     +         S        L         L + +             +    + 
Sbjct: 604 LVLLFQNLIGNAIKFRSKDRVARIHLEAHTRDDAWLLRVRDNGIGIDPQYFERIFLIFQR 663

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
                  P                   I    E     TF          E  
Sbjct: 664 LHTRREYPGTGLGLALCKRIVEHHGGRIFVESEPGQGTTFSFTLSRPGADETR 716


>gi|39656317|gb|AAR29881.1| putative histidine kinase HHK2p [Cochliobolus heterostrophus]
          Length = 2013

 Score =  299 bits (765), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 120/776 (15%), Positives = 230/776 (29%), Gaps = 107/776 (13%)

Query: 117  RLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP---IEGTNLYVPIDLAALPIYSRNR 173
             L D+  +   D  N     +   + +  ++   P   I GT  +    L     +S + 
Sbjct: 769  SLEDLLHLDLGDIANSAAGSVTSPSDYSSRSRHSPGGSIAGTPGW-DTSLGFSSRHSHSG 827

Query: 174  EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH 233
                  G           +     +R   K +H         S  K       + +  P 
Sbjct: 828  TPGHLAG-------SEAVESYFDARRQANKTNHNAASNSQEQSSRKTDKRSGKRVTVNPV 880

Query: 234  LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293
                 +  S        +           T++             + +  +         
Sbjct: 881  AENVKEDPSKPREDKKDEVSSPRYAQAQDTTKRGHSFLHSYGADFSSSFQSLPAATTPGG 940

Query: 294  NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY--SHGNLFYANPSFLLL 351
                      +     S        E+L    +D  P+  F    + G + + N  FL+ 
Sbjct: 941  RPQVPQGSLRTMSVTESSEMP-PPSESLLRTIIDSLPVQIFTAAPNTGAISWVNSKFLIY 999

Query: 352  TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411
                S   ++                +  +            +    RL       E   
Sbjct: 1000 RGQTSRQVLQNPWD-----SIHPEDRDAYLDEWSRSLRTGQQLQMKVRLQRF---DECYR 1051

Query: 412  AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR------KMEIEVMQLCSILEATSDGI 465
                      N+  + +   G   +  +  I ++      +      +  ++  ++   +
Sbjct: 1052 WFYVRVAPLRNKRQQIVHWIGTNMDFHEQHIAEQNSARQQETAASEAKYRALANSSPQIV 1111

Query: 466  AII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT------PSVMNHYLTEILS 518
             ++ +R G +   N       G      L   F   +  +       P +  H +  + +
Sbjct: 1112 FVVSDRRG-LTFCNSQWISFSGQSESQALGNGFLEHVHPDDVIKCKLPELDEHGVANVPT 1170

Query: 519  LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--------------CYSLTMHDISEW 564
                +  ++ +  S    +                                  + D    
Sbjct: 1171 TLPAEQGQQDSNASDASSETERTITSPSGSSPDRMDLPQAKLSKLASTGILRVVKDAHGR 1230

Query: 565  ------KQEKNKLSHAKKIAEKESSHKS-------------------------------- 586
                   + +NK    +    +    KS                                
Sbjct: 1231 ASYSTEVRLRNKDGDYRWHLVRILLEKSLAETSDEETWYGTATDINDHKLLEQTLKETMD 1290

Query: 587  ---DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
                FL+ +SHEIRTPL  I G    + +       N   +E+ N I  S + +L+++ND
Sbjct: 1291 AKSKFLSNMSHEIRTPLNGISGMVNFLLDSVL----NTEQLEHVNIIKASTDSLLNLIND 1346

Query: 644  LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLR 702
            +LD+SK+E+G + L  E + L   + E   L    A +K + +       +P  +  D  
Sbjct: 1347 ILDLSKVEAGMIKLSMEWLHLPSLLEEVNDLNMGLAIQKGLELNYLVDEGVPAEVKGDKF 1406

Query: 703  SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----------VILRVRDTGVGMTNYE 752
             ++Q+ LN++ NAI FT  G +I I      ++           +   V DTG G T+ E
Sbjct: 1407 RIRQVLLNVVGNAIKFTEHG-EIFIRCKLQPSDRSRPLKENETMIRFEVVDTGQGFTDAE 1465

Query: 753  LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
             +   K F QI  S   +  GTGLGL ++   V+ + G+    S P KG+      
Sbjct: 1466 AKYLFKRFSQIDASSTRQHGGTGLGLAISMQFVELHGGRMDARSAPGKGSTFFFTI 1521


>gi|70730557|ref|YP_260298.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68344856|gb|AAY92462.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens
           Pf-5]
          Length = 945

 Score =  299 bits (765), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 99/577 (17%), Positives = 196/577 (33%), Gaps = 38/577 (6%)

Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
            +D  ++        + +      +    +   Q    +    + N++  +  Y+  R  
Sbjct: 141 TRDLQVQRLFSTRPQTSDLPGGLLDKLIALKPEQIPVGEELWLMDNSAAGAHLYIFTRLD 200

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDI-EIAGGLS 367
              +     G  +  +            S G+    N    L+        +      + 
Sbjct: 201 ERFAHSGWLGLEMDGK---SVSAALSDQSAGDFMMFNSQGGLIFSSAPSARLSADVRHVQ 257

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIA---ASARLHTIQWNRENSLAMTFIPFEKANQF 424
                  L        +++ +           S  L  +  +    L    +        
Sbjct: 258 GGSFFGFLGGRWWPDHLVIRKQLGATDWQLVYSFDLQNLLKSLWPQLLAALLISLTGMAL 317

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSK 483
              +                + +         +++     + ++ R +G ++  N    +
Sbjct: 318 IGLLTHWVEVRLIAPALHRIQALVESEAFSRDVIQIAPVALCVLRRSDGRVVLENTLSQQ 377

Query: 484 LFG--YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
             G     + +         +       + Y                    T + + L L
Sbjct: 378 WLGNGSERDQLCSGWIEQAFDP-ARPNSSDYFE------------------TADGRHLYL 418

Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
                +            DIS  KQ +  L  AK++A+  +  K+ FLA +SHEIRTPL 
Sbjct: 419 SSAPTRYNGEDVLFCAFSDISARKQIEAALEEAKRLADTANEAKTLFLATMSHEIRTPLY 478

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
            ++G  E++   +     + +  +Y   I+ S   +L ++ D+LD+SKIE+G++ L    
Sbjct: 479 GVLGTLELLSRTQL----DNQQKDYLQAIEGSSGTLLQLICDVLDVSKIEAGQLALELSE 534

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTP 720
            S  + V E I      A  K +         +P I L D+  ++QI  N+L+NA+ FT 
Sbjct: 535 FSSLDLVHEIIQGYAAAAQAKGLQFYACVDPQLPEILLGDVTRIRQILSNLLNNAVKFTD 594

Query: 721 SGGQI-IISTTHTSNEE--VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
           +G  +  + T     E   ++ +V DTG G+   +     +PF Q          GTGLG
Sbjct: 595 TGRIVLRVRTESRDGERSNILWQVSDTGRGIAQDDQTLIFEPFYQTEG-NTNVIAGTGLG 653

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           LP+ + +     G   + S    G+   +  PL  ++
Sbjct: 654 LPICQRLTQLMNGNIRMVSELGLGSSFTLTLPLEASA 690


>gi|323483856|ref|ZP_08089233.1| histidine kinase [Clostridium symbiosum WAL-14163]
 gi|323402810|gb|EGA95131.1| histidine kinase [Clostridium symbiosum WAL-14163]
          Length = 939

 Score =  299 bits (765), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 92/488 (18%), Positives = 183/488 (37%), Gaps = 35/488 (7%)

Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA-SARLHTIQWNRE 408
                 S+           +    K     A  P  L  +              I     
Sbjct: 299 REFPKGSLSTYYDKFIRDHVFSEDKEKMRRAGSPDFLRNTLSAQHPVYDIDFRRIYPEG- 357

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL---CSILEATSD-- 463
             + +         +            +  + ++ + + + +        +I+   S   
Sbjct: 358 -LIWVRSRFSIAEIKGGRVSKVIFANMQIHEQKMKELEEQQQKRLYFESQNIIRGLSVFY 416

Query: 464 -GIAIINR-EGIILSTN---RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT---- 514
             +  I+         N       +L      + L+  ++ F+ +         L+    
Sbjct: 417 HSVFYIDLLTESFQPFNLMDDLACRLGSSTDYEYLKTVYSCFIHEEDRKRFMEELSACDI 476

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL--------TMHDISEWKQ 566
                                     +R+ I      +   +           +  + ++
Sbjct: 477 RRRITGGDMIYALEYR-RNYGGAYGWMRMHIILAESRNGVPVKVILAAHSVEEEKEQEER 535

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
            +  L  A + A++ +  KS+FLA++SH+IRTPL AI G S +  +Q   P    +  + 
Sbjct: 536 NRKALLAAYEAAKQANEAKSNFLAQMSHDIRTPLNAITGMSSIALSQAEDP---EKVRDC 592

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
              I  S + +++++ND+LD+SKIE GK+ L   P SL E + +  S++   A  K+  +
Sbjct: 593 LKKITLSSHHLIELINDVLDMSKIEKGKLELAEAPFSLKELLGDVESILSPQACAKKQEL 652

Query: 687 RTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQI-----IISTTHTSNEEVILR 740
                 +    +  D   ++Q+ +N+++NAI +TP GG+I      +S+       ++  
Sbjct: 653 CFHNPKSPHDHLCGDAGRIRQVLINLITNAIKYTPDGGRIDIAVQEVSSHLQGYGCLVFT 712

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V DTG+GM+   L+    PF +  +++    +GTGLG+P+A  +V A  G   + S P K
Sbjct: 713 VADTGIGMSKDFLDYIFVPFSRAEDAKACHIQGTGLGMPIALGIVTAMQGNIQVESEPGK 772

Query: 801 GTLIEIIF 808
           G+   +  
Sbjct: 773 GSRFTVTL 780


>gi|291615283|ref|YP_003525440.1| multi-sensor signal transduction histidine kinase [Sideroxydans
           lithotrophicus ES-1]
 gi|291585395|gb|ADE13053.1| multi-sensor signal transduction histidine kinase [Sideroxydans
           lithotrophicus ES-1]
          Length = 450

 Score =  299 bits (765), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 68/380 (17%), Positives = 153/380 (40%), Gaps = 17/380 (4%)

Query: 433 IEPEDVDTRINKRKMEI-EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
           +  +  + +  +  +   E  Q   ++  + D   I++ +G IL  N A   + GY   +
Sbjct: 71  LVIQIRERKRIEDMLRKNEEEQFKVMIRTSLDAFLIMDMQGRILEVNDAYCNMLGYSRAE 130

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP-F 550
           ++           T   +  ++  ++     +     +    K+ ++  +          
Sbjct: 131 LIGMNIADVEAAETEDGVVRHIGTLMQKGSDR---FESRLRRKDGQIQIVEESSNYSDLH 187

Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
                  + DI+E KQ +   +   +     +   ++F   VSH+++ PL  I   ++ +
Sbjct: 188 GGRVYCFLRDITERKQVEAHRAQLLQELGSANEELNNFAYVVSHDLKAPLRGISSLADWL 247

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
            +  +    +    E    +    + +  +++ +L  S++  G++      V +   V E
Sbjct: 248 -STDYADKFDEDGKEQMRLLINRVHRMDGLIDGILLYSRV--GRVKETMTAVDIGRLVPE 304

Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP-SGGQIIIST 729
            I L+   AN     I  +  + +P ++A+   ++Q+  N+LSNAI +     G+I I+ 
Sbjct: 305 VIDLLAPPAN-----IAVTIEDPLPTVMAEPTRIQQLFQNLLSNAIKYMDKPEGRIRINC 359

Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
                ++    V D G G+     EK  + F  +  + + R E +G+GL L K +V+   
Sbjct: 360 -CAEGKQWKFSVSDNGPGIKQQHFEKIFQLFQTL--APRDRVESSGVGLALVKKIVEMYG 416

Query: 790 GKFYIFSTPAKGTLIEIIFP 809
           G  ++ S   +G+      P
Sbjct: 417 GTIWVESVVGEGSTFFFTLP 436



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 57/174 (32%), Gaps = 14/174 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D  G + E+++     +G    ++IGM + DV      D        L ++ +   ++ 
Sbjct: 107 MDMQGRILEVNDAYCNMLGYSRAELIGMNIADVEAAETEDGVVRHIGTLMQKGSDRFESR 166

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           L   +G    V        ++       G R +  +          A   +L ++    +
Sbjct: 167 LRRKDGQIQIVEESSNYSDLH-------GGRVYCFLRDITERKQVEAHRAQLLQELGSAN 219

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
           E     + V              P   + +    L+  YA K D    E+  LL
Sbjct: 220 EELNNFAYVVSHDLK-------APLRGISSLADWLSTDYADKFDEDGKEQMRLL 266



 Score = 40.0 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 13/186 (6%), Positives = 39/186 (20%), Gaps = 31/186 (16%)

Query: 299 SFEYLSHRNHPSLSAYFDE-GENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKS 356
               +  R    +     +  E      +      F +    G +   N ++  +  Y  
Sbjct: 69  RPLVIQIRERKRIEDMLRKNEEEQFKVMIRTSLDAFLIMDMQGRILEVNDAYCNMLGYSR 128

Query: 357 VDDIE---------IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
            + I                       +   +      L R D          +    + 
Sbjct: 129 AELIGMNIADVEAAETEDGVVRHIGTLMQKGSDRFESRLRRKDGQIQIVEESSNYSDLHG 188

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
                                       +  + +  +      + +L S  E  ++   +
Sbjct: 189 GRVYCF--------------------LRDITERKQVEAHRAQLLQELGSANEELNNFAYV 228

Query: 468 INREGI 473
           ++ +  
Sbjct: 229 VSHDLK 234


>gi|239908793|ref|YP_002955535.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239798660|dbj|BAH77649.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 788

 Score =  299 bits (765), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 108/620 (17%), Positives = 218/620 (35%), Gaps = 58/620 (9%)

Query: 242 SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301
             +     +D  +  + +  L +              + +++          ++  ++  
Sbjct: 32  PFSSLILKQDQSIYFKLHNNLVATNMPEARDLRMMRSDGSEFWVHLSATIGHDSDGQAEI 91

Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-----HGNLFYANPSFLLLTKYKS 356
           +++  N  +     ++    + E +         +       G L + +PS   +T+Y  
Sbjct: 92  HIAI-NDITERKQAEDALRKSEEHLRIVSDNATDWEYWRGPDGKLKWVSPSCKEITEYTP 150

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
            + +  +      +  P+           L   +   +        I     + + +  I
Sbjct: 151 EEFMGESPLAIQQIVYPEDQGLWLEHLKQLDTQEPPHLELE---FRIIKRSGDVVWINHI 207

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKM-------------EIEVMQLCSILEATSD 463
                ++    + +     +    +  ++ +                      + E    
Sbjct: 208 CKPIYSREGVYLGRRVCNRDITARKTIEKALTFLATCCSARSGVAFFESLARYLAETLGM 267

Query: 464 GIAIINR---------------EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
               I+R               +G     N   + L   P  D++ K    F        
Sbjct: 268 DFVCIDRLEGDGLNARTLAVYFDGHFED-NITYA-LKDTPCGDVVGKESCCFPHDVRGLF 325

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS-----E 563
               + + +  +    +            +  +     K P+ +   L +  +      E
Sbjct: 326 PKDAVLQGMQAESYVGITLWDSAGRPNGLIAVIGRTPLKDPWLAESILQLAGVRAGGELE 385

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             Q +  L  AK  AE  +  KS FLA +SHEIRTPL  ++G  +++         N   
Sbjct: 386 RLQAEEALQSAKIAAESANKAKSVFLANMSHEIRTPLNGVLGMLQLL----DTTAPNDEQ 441

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            EY     +S N +  +++D+LDIS+IE+G+M++     ++         L  L A  K 
Sbjct: 442 KEYLLGAVQSTNRLARLLSDILDISRIEAGRMDIVELEFNIQNTWDSIKELFALEARRKG 501

Query: 684 ILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTH--------TSN 734
           +++      ++P +L  D   ++QI  N++ NA+ FT  G +I I  +         +S 
Sbjct: 502 LILEFGCVKDLPLLLIGDEVRLRQILFNLVGNAVKFTEKG-KIRIDASLLPLLPSSKSSA 560

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
             V++ V DTGVG+    ++   +PF Q   S   R +G GLGL +   +V    G+  I
Sbjct: 561 IRVLITVHDTGVGIPEEYIKDIFEPFVQADGSYTRRFQGAGLGLSIVSRLVKLLGGEIAI 620

Query: 795 FSTPAKGTLIEIIFPLYDTS 814
            STP +GT   I  P   +S
Sbjct: 621 DSTPGEGTAFYISLPFKLSS 640



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 47/109 (43%), Gaps = 1/109 (0%)

Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
           G++L TN   + +F     D+ RKPF+  + +   S+       +++ ++ +  +   + 
Sbjct: 8   GLLLETNLTAATMFSTNRSDLFRKPFSSLILKQDQSIYFKLHNNLVATNMPEARDLRMMR 67

Query: 532 STKEEKLLSLRIIIKKLPFSSCYSLT-MHDISEWKQEKNKLSHAKKIAE 579
           S   E  + L   I             ++DI+E KQ ++ L  +++   
Sbjct: 68  SDGSEFWVHLSATIGHDSDGQAEIHIAINDITERKQAEDALRKSEEHLR 116



 Score = 39.6 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 19/119 (15%), Positives = 32/119 (26%), Gaps = 8/119 (6%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMR---LCDVSDILHIDPNNHIGDLLKRQNTW 143
           W     G LK +S    +       + +G     +  +               L  Q   
Sbjct: 128 WR-GPDGKLKWVSPSCKEITEYTPEEFMGESPLAIQQIVYPEDQGLWLEHLKQLDTQEPP 186

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIV-HVNRVDNDPRALGKRLD 201
           + +     I+ +   V I+    PIYSR   + G R   +                 L 
Sbjct: 187 HLELEFRIIKRSGDVVWINHICKPIYSREGVYLGRR---VCNRDITARKTIEKALTFLA 242


>gi|194438901|ref|ZP_03070986.1| phosphate regulon sensor protein PhoR [Escherichia coli 101-1]
 gi|253774615|ref|YP_003037446.1| phosphate regulon sensor protein [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254160467|ref|YP_003043575.1| phosphate regulon sensor protein [Escherichia coli B str. REL606]
 gi|300930308|ref|ZP_07145720.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 187-1]
 gi|194422195|gb|EDX38197.1| phosphate regulon sensor protein PhoR [Escherichia coli 101-1]
 gi|242376178|emb|CAQ30869.1| PhoR sensory histidine kinase [Escherichia coli BL21(DE3)]
 gi|253325659|gb|ACT30261.1| PAS/PAC sensor signal transduction histidine kinase [Escherichia
           coli 'BL21-Gold(DE3)pLysS AG']
 gi|253972368|gb|ACT38039.1| sensory histidine kinase in two-component regulatory system with
           PhoB [Escherichia coli B str. REL606]
 gi|253976577|gb|ACT42247.1| sensory histidine kinase in two-component regulatory system with
           PhoB [Escherichia coli BL21(DE3)]
 gi|300461768|gb|EFK25261.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 187-1]
 gi|323963385|gb|EGB58947.1| phosphate regulon sensor kinase PhoR [Escherichia coli H489]
 gi|323972249|gb|EGB67459.1| phosphate regulon sensor kinase PhoR [Escherichia coli TA007]
          Length = 431

 Score =  299 bits (765), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 73/427 (17%), Positives = 150/427 (35%), Gaps = 37/427 (8%)

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             +L       I     L  + W     L +         +        G+    +  + 
Sbjct: 33  WFLLASVTGLLIWHFWNLLRLSW----WLWVDRSMTPPPGRGSWEPLLYGLHQMQLRNKK 88

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            +R++   + +  S  E+  D + +   EG I   N    ++ G    +   +     L 
Sbjct: 89  RRRELGNLIKRFRSGAESLPDAVVLTTEEGGIFWCNGLAQQILGLRWPEDNGQNILNLLR 148

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
               +               +   +         + L +R++           +   D++
Sbjct: 149 YPEFTQYL----------KTRDFSRPLNLVLNTGRHLEIRVMPYTHKQ---LLMVARDVT 195

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  Q +                + +F A VSHE+RTPLT + G+ E++  Q        +
Sbjct: 196 QMHQLEG--------------ARRNFFANVSHELRTPLTVLQGYLEMMDEQPLEGAVREK 241

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                + +      +  +V  LL +SKIE+    L  E V +   +       Q  + +K
Sbjct: 242 A---LHTMREQTQRMEGLVKQLLTLSKIEAAPTQLLNEKVDVPMMLRVVEREAQTLSQKK 298

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           +        N + ++  +   ++    N++ NA++ TP G  I +      +      V 
Sbjct: 299 Q-TFTFEIDNGL-KVSGNEDQLRSAISNLVYNAVNHTPEGTHITVRWLRVPHG-AEFSVE 355

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G G+    + +  + F ++  ++  +  G+GLGL + K  V+ +  +  I ST  KGT
Sbjct: 356 DNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHAVNHHESRLNIESTVGKGT 415

Query: 803 LIEIIFP 809
               + P
Sbjct: 416 RFSFVIP 422


>gi|294506832|ref|YP_003570890.1| PAS/PAC/histidine kinase protein [Salinibacter ruber M8]
 gi|294343160|emb|CBH23938.1| PAS/PAC/histidine kinase protein [Salinibacter ruber M8]
          Length = 851

 Score =  299 bits (765), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 124/818 (15%), Positives = 266/818 (32%), Gaps = 78/818 (9%)

Query: 33  GFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAH 92
           GF    ++          +    +   E+++ T           +            D  
Sbjct: 70  GFVGRPAETRRREAAPDGRQAARNARLEALTETM-----PGVPCEFRVGP-------DGE 117

Query: 93  GYLKEISEELPKTIGNYAF-KMIGMRLCD-VSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150
             +  I +   + +G          R  + + +    +    + + +  ++ W  +    
Sbjct: 118 QSIAFIGDGATELLGLAPEPDGFYERFVEHIPESHRGEFLRSVEEAVTTRSRWRQEVPFD 177

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFG--IVHVNRVDNDPRALGKRLDKKFSHLH 208
             +G    + +  +A P      +   FRG    I            + +R+      + 
Sbjct: 178 RPDGE--RIWLLGSAEP--DPQDKGVLFRGLLLNITERIDEKRRREQVIRRVTDAIVEVD 233

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
                    ++ +     ++       + +           ++          +  EE  
Sbjct: 234 AEWCFTLVNDQAEALYGMKEEHLLGRTLWDAFPRTKGTRFEEEYRWVMRSREPVRFEE-- 291

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
              +      ++  Y           +     +    +            EN+T      
Sbjct: 292 -HFERMGAWFDIQIYPNPDGGLAFYFDDVTERKEREEKLREREELLRSITENVTEGIYRS 350

Query: 329 CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388
                   S   + YAN +F+ +  Y+S D++  A   ST    P      A +  +  +
Sbjct: 351 -------TSEEGIVYANSAFVEMFGYESRDELRAADP-STFYADP------AEREALYRQ 396

Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
            D         +   + +      +     +        +  +G   E    +  ++ ++
Sbjct: 397 EDEQGGLDGVEVQFQRNDGSTFTGL-LSTQQVDAPDGNQVYNDGAVTEITQRKRQEQMLK 455

Query: 449 IEVMQLCSILEATSDGIAIINRE---GIILSTNRAVSKLFGYPVEDI------------- 492
               ++ ++  ATS  +++ NR+   G I      + ++FG+P+  I             
Sbjct: 456 SRRRKIEALYRATSGLLSVENRDAVPGRIAEV---LQEVFGFPLRHIGLVEGEMLVPKKT 512

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
           + +  +   E     +    +           + + T G   +    +L  +        
Sbjct: 513 VGEDLSRMPEPKAQPLSEDLMATRAIQAGEAVVVESTGGLENDIDYGTLSTLAGIPIGGH 572

Query: 553 CYSLTMHD---------------------ISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
              +   +                     +    + + +L  A++ AE+ +  KS  LA 
Sbjct: 573 GAVVVGKEAGTFDALDLRLLEVLGGYATLVLGRLEREERLVQAREEAEEAAQLKSAMLAN 632

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           +SHE+RTPL ++IG +++++             E A  I RSG  + + ++ +L++S++E
Sbjct: 633 MSHEVRTPLMSMIGSADLLREDLEEAGLEGEPAEMAEQIFRSGQRLRETLDSVLELSRLE 692

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
           SG   L  +   L   V E    + L A+EK + +          +  D  +V++I  N+
Sbjct: 693 SGAYTLDDDSAYLGVIVREVAQELHLRAHEKGVRLEVGGPGASVEVRLDETAVRRIVRNL 752

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           + NAI FTP GG++ +       E  +L V DTGVG+     E     F Q         
Sbjct: 753 VENAIKFTPEGGEVQVRVEPEDEETALLAVEDTGVGIAEEAREDIFDAFKQESEGLDREY 812

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           EG+GLGL +   +     G   + S    GT   +  P
Sbjct: 813 EGSGLGLSIVDRLTTMLGGTIEVESEKGVGTRFAVRLP 850


>gi|170692375|ref|ZP_02883538.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia graminis
           C4D1M]
 gi|170142805|gb|EDT10970.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia graminis
           C4D1M]
          Length = 657

 Score =  299 bits (765), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 99/505 (19%), Positives = 178/505 (35%), Gaps = 31/505 (6%)

Query: 331 IPFFVYSHGNLFYAN----PSFLLLTKYKSVDDIEI---AGGLSTLLDAPKLSDNN-AIK 382
           +       G L  A      +   +    SV+       AGGL  L+   +LS     + 
Sbjct: 13  VLVVDDDEGILRLARKSLERAGCRVAVCPSVEAARERLAAGGLDLLVLDYQLSGPETGLD 72

Query: 383 PVMLYRSDRTCIA------ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
                RS+   I        +     I+  R     +     +  +  PE + +   +  
Sbjct: 73  FFRRLRSEGVRIPAILVTGFTDESRVIEALRAGVSDVVPKSGDYLDYLPEAVERVLSQVR 132

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
                     +         + EA    +   N  G     ++      G          
Sbjct: 133 LQRASDEALLLRDREQHYRDLSEALPHLVLTCNAAGDCDFLSKQWYDYTGLTENSSHGLA 192

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--- 553
           +   +  +    +     + ++     T          + +       I     +     
Sbjct: 193 WLDAVHPDDREEVRRSWLKAVA-GNAGTYRHELRIRRHDGEYRWFDTRIVATRDNEGNIS 251

Query: 554 -YSLTMHDIS-------EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
            +  +  DI        E ++       A++IAE+ +  K  FLA +SHE+RTPLT ++ 
Sbjct: 252 KWFGSCTDIHSEREAMQERERLLASEQAARQIAEEANRAKDRFLAMLSHELRTPLTPVLA 311

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
            + V++     P    +       I R+  L   +++DLLD++++ +GK+ L  E V + 
Sbjct: 312 GASVLE---MIPDLPDQARSSVRMIRRNIELEARLIDDLLDLTRVANGKLRLSLETVDVH 368

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725
           E +   + L +     K+  +          +LAD   ++Q+  N++ NA  FTP GG I
Sbjct: 369 EVIDSVLELFRSEIQVKQQDVHVHKDATHHYVLADRARLQQMLWNLIRNAAKFTPDGGHI 428

Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
            + T       V + V DTG+G+   ++ K    F Q       +  G GLGL + KA+ 
Sbjct: 429 YVRTR-DERMHVQISVEDTGIGIEPEQIGKLFNAFEQGDQKMTRQFGGLGLGLAITKALT 487

Query: 786 DANMGKFYIFS-TPAKGTLIEIIFP 809
           D + G     S  P  G    I  P
Sbjct: 488 DVHGGTVTAQSPGPHCGATFTITLP 512



 Score = 48.5 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/182 (12%), Positives = 49/182 (26%), Gaps = 6/182 (3%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNTWYGKT 147
           +A G    +S++     G       G+   D       +      +  +     T+  + 
Sbjct: 165 NAAGDCDFLSKQWYDYTGLTENSSHGLAWLDAVHPDDREEVRRSWLKAVAGNAGTYRHEL 224

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
            +   +G   Y   D   +         S  + FG       + +     +RL       
Sbjct: 225 RIRRHDGE--YRWFDTRIVATRDNEGNIS--KWFGSCTDIHSEREAMQERERLLASEQAA 280

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
            +I +  +  +     + S +   P   +    S L       D    + +      E  
Sbjct: 281 RQIAEEANRAKDRFLAMLSHELRTPLTPVLAGASVLEMIPDLPDQARSSVRMIRRNIELE 340

Query: 268 SL 269
           + 
Sbjct: 341 AR 342


>gi|219667804|ref|YP_002458239.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfitobacterium hafniense DCB-2]
 gi|219538064|gb|ACL19803.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfitobacterium hafniense DCB-2]
          Length = 614

 Score =  299 bits (765), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 75/368 (20%), Positives = 154/368 (41%), Gaps = 37/368 (10%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
             +E+E  +L   ++  ++GI  I+ EG     N ++ ++FG    +             
Sbjct: 272 SALELERNRLKQTIDGLAEGIVAIDNEGNFTHINPSIQRIFGKNPGEGRMSLIPSQELWE 331

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHD 560
               +                +  T+  + + K + LR+ I  L       +       D
Sbjct: 332 DFDAVLA--------------QGYTIVRSLQWKQMLLRVTICPLEDETHHIAGVVGLFRD 377

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I+E ++ +                + +++A VSHE+RTP++A+   SE + +        
Sbjct: 378 ITESERLEQT--------------RREYVANVSHELRTPVSALRALSETLADGMVS--DE 421

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
                Y N++      +  ++NDLL +S+++S    +H E   ++E         +  A 
Sbjct: 422 ETKNRYYNHMLHETMRLTRLINDLLTLSRLQSHTEQVHTEAFLINEVTGSVAERYKPLAQ 481

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
           +K +    S   +  ++++++  V+Q+ + +L NAI +T SGG+I + T     + V + 
Sbjct: 482 KKGLRFDYSPLVHDLKVMSNMDLVEQVLIILLDNAIKYTQSGGRISLGTVL-DKDRVKVS 540

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V DTG+G+   +L    + F +   +     +GTGLGL +A  +      + Y+ S   +
Sbjct: 541 VADTGMGIAPEDLPHIFERFYKADKAHS--TQGTGLGLAIAFEISQRLGEEIYVESHLNE 598

Query: 801 GTLIEIIF 808
           G+      
Sbjct: 599 GSTFTFTL 606



 Score = 45.8 bits (107), Expect = 0.030,   Method: Composition-based stats.
 Identities = 33/332 (9%), Positives = 75/332 (22%), Gaps = 50/332 (15%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGM----RLCDVSDILHIDPNNHIGDLLKRQNTWY 144
           ID  G    I+  + +  G    +  G        ++ +            +L +  T  
Sbjct: 295 IDNEGNFTHINPSIQRIFGKNPGE--GRMSLIPSQELWEDFD--------AVLAQGYTIV 344

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
             +  W        + + +   P+       +G    G+              +      
Sbjct: 345 R-SLQWK------QMLLRVTICPLEDETHHIAGV--VGLFRDITESERLEQTRR------ 389

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
                                S+      +  +   +    +  H+   L      LLT 
Sbjct: 390 -EYVANVSHELRTPVSALRALSETLADGMVSDEETKNRYYNHMLHETMRLTRLINDLLTL 448

Query: 265 EESSLPEQEDFHTINLNQY---TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
                  ++      L      +  + +  L       F+Y    +   + +  D  E +
Sbjct: 449 SRLQSHTEQVHTEAFLINEVTGSVAERYKPLAQKKGLRFDYSPLVHDLKVMSNMDLVEQV 508

Query: 322 TPETVDKCPIPFFVYSHGNLFYAN--------PSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
               +D      +  S G +             S        + +D+           A 
Sbjct: 509 LIILLDNA--IKYTQSGGRISLGTVLDKDRVKVSVADTGMGIAPEDLPHI--FERFYKAD 564

Query: 374 KLSDNNAIK-----PVMLYRSDRTCIAASARL 400
           K                + +     I   + L
Sbjct: 565 KAHSTQGTGLGLAIAFEISQRLGEEIYVESHL 596


>gi|317122483|ref|YP_004102486.1| multi-sensor signal transduction histidine kinase [Thermaerobacter
           marianensis DSM 12885]
 gi|315592463|gb|ADU51759.1| multi-sensor signal transduction histidine kinase [Thermaerobacter
           marianensis DSM 12885]
          Length = 550

 Score =  299 bits (765), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 86/465 (18%), Positives = 162/465 (34%), Gaps = 75/465 (16%)

Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK--RKMEIEVMQLCSILEATSD 463
                LA            P+ +        ++  R+    R++  E  +L +++ A + 
Sbjct: 78  RGARRLAAGEFDRRVHVDGPDELVMLARAFNEMAGRLQATLRELRAEQARLATVVGAMTS 137

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT--EILSLDL 521
           G+  I+ +G +   N A  +L     + + R   +V         +   L    ++  D+
Sbjct: 138 GVLFIDGDGRLRLANPAARRLLDITEQALGRDYISVTRHYGLARAIEEGLAGGRVVERDV 197

Query: 522 RQTLEKITLGSTKEEKLLSLRIII------------------------------------ 545
               +           ++ L                                        
Sbjct: 198 TIPPDPGAAPRHVRVTVVPLDADARGAMAPGGGPGPGTGHGDAAAAPAGLGPEPARARHQ 257

Query: 546 -----------------KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
                                      + +HDI+E ++ +                + DF
Sbjct: 258 GGAPREAGPRSAGGGVTAAEGKRGGVVVVLHDITEIRRLE--------------QIRRDF 303

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
           +A VSHE+RTP+ AI GF+E +               +A  I R    +  +V DLLD++
Sbjct: 304 VANVSHELRTPVAAIQGFAETLLEGVI-REDPATAEHFAQVIHREAERMARLVQDLLDLA 362

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIA 708
           ++ES +  L  E   L ++ ++A    +       + +          + AD   + Q+ 
Sbjct: 363 RLESPEPGLQRERFDLRDSAAQAAERFRPRLEAAGLRLEVESPPEPVPVWADRHRLDQVW 422

Query: 709 LNILSNAIHFTPSGGQIIISTTHTSNEE---VILRVRDTGVGMTNYELEKAMKPFGQIPN 765
            N+L NA  +TP+GG + ++            +  VRDTG G+    L +  + F ++  
Sbjct: 423 TNLLENARQYTPAGGTVTVAVRRDGTGRKARAVGEVRDTGRGIPPDALPRIFERFYRVDP 482

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            +     GTGLGL + K +++A+ G     S    GT+I    PL
Sbjct: 483 GRSRASGGTGLGLAIVKHIIEAHGGAVEAESELGAGTVIRFRIPL 527



 Score = 43.1 bits (100), Expect = 0.20,   Method: Composition-based stats.
 Identities = 27/359 (7%), Positives = 70/359 (19%), Gaps = 27/359 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G L+  +    + +       +G     V+    +     I + L           
Sbjct: 142 IDGDGRLRLANPAARRLLDITEQA-LGRDYISVTRHYGL--ARAIEEGLAGGRVVER-DV 197

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
             P +       + +  +P+ +  R         +                         
Sbjct: 198 TIPPDPGAAPRHVRVTVVPLDADARG-------AMAPGGGPGPGTGHGDAAAAPAGLGPE 250

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
             +  H             +S    +              H    ++  +        + 
Sbjct: 251 PARARHQGGAP---REAGPRSAGGGVTAAEGKRGGVVVVLHDITEIRRLEQIRRDFVANV 307

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
             E              +     +      + E+ +   H          ++L      +
Sbjct: 308 SHELRTPVAAIQGF--AETLLEGVIREDPATAEHFAQVIHREAERMARLVQDLLDLARLE 365

Query: 329 CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388
            P P                L  +  ++ +        + L    +            +R
Sbjct: 366 SPEPGLQRE--------RFDLRDSAAQAAERFRPRLEAAGLRLEVESPPEPVPVWADRHR 417

Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN---GIEPEDVDTRINK 444
            D+                                      ++   GI P+ +     +
Sbjct: 418 LDQVWTNLLENARQYTPAGGTVTVAVRRDGTGRKARAVGEVRDTGRGIPPDALPRIFER 476


>gi|312891334|ref|ZP_07750852.1| multi-sensor signal transduction histidine kinase [Mucilaginibacter
           paludis DSM 18603]
 gi|311296195|gb|EFQ73346.1| multi-sensor signal transduction histidine kinase [Mucilaginibacter
           paludis DSM 18603]
          Length = 471

 Score =  299 bits (765), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 83/372 (22%), Positives = 170/372 (45%), Gaps = 24/372 (6%)

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
              +++    +  +++E +S+GI  +N +G I+ ++ +V  + GY  E+ +  P    L 
Sbjct: 121 AVSQIDENDARFKTLVEKSSEGIVTMNVDGKIIYSSPSVQNIIGYTDEEFIHLPTWQLLH 180

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT---MH 559
           ++  S +        S    +TL  I     K    + +   +  L      +       
Sbjct: 181 EDEASKVREQFFRFASHPN-KTLTIIHRMKHKNGNWIWIESKMTNLLDERPINAVIANFT 239

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           +++E    +                K DF+   SHE++TPLT++  +++V++  RF    
Sbjct: 240 EVTERVLNE--------------KLKEDFIGIASHELKTPLTSLKAYTQVLQ-HRFKNSE 284

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
           +   +   N I+     V+ ++ +LLD++ ++  K+NLH   + L+  V+E    +Q   
Sbjct: 285 DETSLNIINKIEHQVTRVVQMITNLLDVTTLQEKKLNLHIRDIDLNLLVTEIADAIQQTT 344

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
              RI+++      +P I AD   + Q+  N++SNAI ++P+   + +ST    N+ VI 
Sbjct: 345 KVHRIILQL---APLPTIPADRERLAQVISNMISNAIKYSPNADAVQVSTRIE-NDRVIF 400

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V D G+G++  EL +  + F +   + +   +G GLGL +   +++ + G+    S   
Sbjct: 401 SVLDHGIGISPSELNQVFERFFRADGA-KKSFQGLGLGLFICAQILEQHGGEIGATSKEG 459

Query: 800 KGTLIEIIFPLY 811
           +G+      PL 
Sbjct: 460 EGSTFWFSLPLA 471


>gi|153873278|ref|ZP_02001912.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
 gi|152070256|gb|EDN68088.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
          Length = 617

 Score =  299 bits (765), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 88/329 (26%), Positives = 157/329 (47%), Gaps = 11/329 (3%)

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
                ++ +  +              L + +     + LE   +   + E+  +  +  K
Sbjct: 29  IDAPQLINRVKSYLRFIEQDHQHKQDLEQKVKERTAELLEARNILEQRVEERTAELLTAK 88

Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
            L   +          +  + +      +KIAE+ +  KS FLA +SHE+RTPL AIIG+
Sbjct: 89  NLAEQAQKMADA----DRVKAEQS----QKIAEEANYAKSHFLANMSHELRTPLNAIIGY 140

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
           SE+++      L     +     I  +G  +L ++N +LD+SKIE+G+M L+ E   L+ 
Sbjct: 141 SEMLQEDAED-LNQESCVLDLKKIQGAGKHLLGLINTVLDLSKIEAGRMELYIETFELNP 199

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726
            ++E +S +Q    +K  +++T F +N+ ++  DL  ++Q+ LN+LSN   FT  G QI 
Sbjct: 200 VLNEIVSTIQPLVEKKANVLKTVFDDNLGQMHTDLTKLRQMLLNLLSNTAKFTEQG-QIR 258

Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
           +       E +   + D G+GMT  + +K  +PF Q   S   R  GTGLGL + K   +
Sbjct: 259 MEVR-RDGEWINFCIADNGIGMTEEQQKKIFQPFTQADASTTRRYGGTGLGLAITKQFSE 317

Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
              G  ++ S   +G++  +  P+   +H
Sbjct: 318 MMGGVIWVESEFGQGSIFMMSLPIQAKTH 346


>gi|320167757|gb|EFW44656.1| integral membrane sensor hybrid histidine kinase [Capsaspora
           owczarzaki ATCC 30864]
          Length = 1474

 Score =  299 bits (765), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 94/538 (17%), Positives = 193/538 (35%), Gaps = 62/538 (11%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
               A   + E       D        +  +  +  AN +F  L K            + 
Sbjct: 350 EQQRATSSKNEKKYRNIFDNSHEAIVMIDKNDEIIEANRTFFELYKIPRDHRCGSQVTVH 409

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
             L      ++      +L  +  T       L+++  + +           +  +   +
Sbjct: 410 FRLAELFAKESRRELRRVLASTAGTSQTRVCELNSVALDGQAYPIRLVASSLRTAEDDMS 469

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
           + +  I         +++ +            + +   +                +    
Sbjct: 470 ISERTIVSAIPAGAQSEQSL------------SATQATSATQERHGFRFW----RRWTRD 513

Query: 488 PVEDILRKPFTV---FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
           P   +  +P T     ++          +T   +  + +  E + + +  E +   +   
Sbjct: 514 PPPSVTAQPATPGRSSVQPLLVESSAPVVTSSQTGSVVRPGEPVVVHANPEPEHTEVEFD 573

Query: 545 IKKLPFSSC--------------------------YSLTMHDISEWKQEKNKLSHAKKIA 578
           I                                    +++ ++++ ++     S A K  
Sbjct: 574 IHDYTDDEDCDPVSPLYQYQPRGTPVPPGWYRKPTRLVSIINLTDQRRVNAAESEALKE- 632

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
           ++ +  KS FLA +SHE+RTPL  I+G ++++         N    +Y + I  S  ++L
Sbjct: 633 KQANEAKSRFLANMSHEVRTPLNCILGMTQIMMTTSL----NNEQSDYLDTIKVSAQILL 688

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
            ++ND+LD SKIE+G++++   P +  +     + L+   A  K +L+       +PR+L
Sbjct: 689 TVINDILDFSKIEAGQLSIDAIPFNFVQITENIVDLLFPSAATKNLLLSCFIDPQLPRVL 748

Query: 699 -ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV-------ILRVRDTGVGMTN 750
             D    +QI +N++SN I FT SG    +S     + EV          V DTG+G+  
Sbjct: 749 VGDPNRFQQILVNLVSNGIKFTTSGS---VSLRCLLDSEVDDDHLLARFEVVDTGIGIEA 805

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
             L++  + F Q+ +S      GTGLGL + K++V    G   + ST  +G+      
Sbjct: 806 DALDRLFQRFSQVDSSITRSYGGTGLGLVICKSLVTLMGGTIGVDSTRGEGSRFWFTI 863



 Score = 58.1 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 13/121 (10%), Positives = 35/121 (28%), Gaps = 8/121 (6%)

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
            +       +        +  +I + + + I +I++   I+  NR   +L+  P +    
Sbjct: 344 WDLKQLEQQRATSSKNEKKYRNIFDNSHEAIVMIDKNDEIIEANRTFFELYKIPRDHRCG 403

Query: 495 K------PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
                         + +   +   L         QT          + +   +R++   L
Sbjct: 404 SQVTVHFRLAELFAKESRRELRRVLASTA--GTSQTRVCELNSVALDGQAYPIRLVASSL 461

Query: 549 P 549
            
Sbjct: 462 R 462


>gi|87309428|ref|ZP_01091563.1| two-component sensor histidine kinase [Blastopirellula marina DSM
           3645]
 gi|87287736|gb|EAQ79635.1| two-component sensor histidine kinase [Blastopirellula marina DSM
           3645]
          Length = 499

 Score =  299 bits (765), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 93/437 (21%), Positives = 187/437 (42%), Gaps = 39/437 (8%)

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV------ 451
           A L  ++ +   +         K     E   +      D   ++ + ++  EV      
Sbjct: 80  ASLEQLEHDDLQAACPQARELRKWKSPLEQCYRRMKLLADDARQLQQSRVRSEVKAHLTG 139

Query: 452 ---MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
               Q+  I++  S+ + + N+   I+  N    +LFG    D+  K        +   V
Sbjct: 140 LRHEQMREIVDKLSEPVMMTNQYDEIIFANEVARELFGI--LDLAEKTMAADAIASEGIV 197

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII---------IKKLPFSSCYSLTMH 559
                T +     ++  E   L S  ++    + +          +     +      + 
Sbjct: 198 QLLQETRLRKTPTQRVSEIELLDSADDKHWYRITVSTIAQHLDNEMGADEPNYGAVAVLR 257

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           DIS +K  + +               ++F++ VSHE++TPL  I  + E++ +       
Sbjct: 258 DISGYKAIQRRN--------------AEFVSAVSHEMKTPLAGIKAYVELLADGE--AED 301

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
                E+   I+   + +  ++++LL++++IE+G +N++ +P SL+E + EA  +V   A
Sbjct: 302 EQTRDEFLQVINSQADRLQRLIDNLLNLARIEAGVVNVNKKPRSLNELLEEAFRIVHPTA 361

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
            +K I + +  +     +L D   + Q A+N+LSNA+ +TP  G++ + +      EV+ 
Sbjct: 362 EQKNITLISDLSPMYLGVLVDRDMIMQAAINLLSNALKYTPDNGKVTLRSRLQDR-EVVF 420

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA-NMGKFYIFSTP 798
            V DTGVG++  + ++  + F ++    Q    GTGLGLPLAK +V+  + G+  + S  
Sbjct: 421 EVEDTGVGLSPEDCDRVFEKFYRVKKD-QKMASGTGLGLPLAKHIVEDVHGGELNVTSES 479

Query: 799 AKGTLIEIIFPLYDTSH 815
             G+   I  P    + 
Sbjct: 480 GVGSTFRIRLPTVQVAE 496


>gi|218778561|ref|YP_002429879.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218759945|gb|ACL02411.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 1032

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 106/745 (14%), Positives = 227/745 (30%), Gaps = 64/745 (8%)

Query: 93  GYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL-HIDPNNHIGDLLKRQNTWYGKTTLWP 151
           G +   +    K +G        +   D+     H D        +  +           
Sbjct: 186 GEVVYANPFARKRLGYSRDDFQNLAFWDLFPEDTHADARTFFKAAITTKQ---DFPLPLR 242

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
                       A    +           F +        +   L +RL +    L    
Sbjct: 243 NRDGRRIASETCAWKGKWGEKDAI-----FLVSKDLSDLQENLHLFERLFRDNPIL---- 293

Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271
              +     +           ++   +K   L    A+    +  EK   ++        
Sbjct: 294 --MALTTIPEGRFVDVNVAFINMLGYSKAEILGNTVANLGLFVHPEKQANVSKLLRKNGN 351

Query: 272 QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH--PSLSAYFDEGENLTPETVDKC 329
             +     + ++               +    S       +     +    L    +D+ 
Sbjct: 352 LNNVELQVVTKHGSILEGLFSGEVVYSNGTPYSLTAMSNITEQRKIESALKLQAMVLDQI 411

Query: 330 PIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388
                V    G + Y N +      Y   + +   G  + +            +      
Sbjct: 412 HDYVTVTDTKGVITYVNNAVKTNLGYTQGELV---GLSTEVYGEKSGHGATQQEIFQKTL 468

Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
            D           TI       + +     +  +   E +   G+  +  + +  ++ + 
Sbjct: 469 QDGR-WHGEVVNRTIH---GREVFLDSRVQKVFDDSGECIALCGVSTDITERKKIEQDLI 524

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR--KPFTVFLEQNTP 506
               Q    +    DGI   +     L  +    ++ GY  E++      F   L     
Sbjct: 525 KSKEQYVLAINGARDGIWDWDLHDNSLFLSPRWKEMIGYCDEELPNIFSSFEDRLHPEDK 584

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SLTMHDIS 562
            V+  Y+   L                K+     ++   + L   +      + +  DI+
Sbjct: 585 PVVLKYVENYLLGKTPA-YSIEFRLRHKDGSYRWIQARGEALRDENGVPYRMAGSHTDIT 643

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E K  + K+  A+K+    +       + ++H+    LT I+G +E++        G+P 
Sbjct: 644 EQKSFEEKIQQAQKMESIAN-----LASGIAHDFNNILTPILGLAEMLTEDL--RTGSPE 696

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
            I+    I ++     D+++ +L   +    K      PV     + + ++L +     K
Sbjct: 697 QIK-VKEIFKASERARDLISQILAFGR----KSEEKLGPVKFQYILDDVLTLCRSSIP-K 750

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP--SGGQIIISTTHTSNE----- 735
            I I+++   N   I A+   + QIA+N+++NA H      G +I +S            
Sbjct: 751 NIEIQSAIQKNCGAIWANATQLHQIAMNLITNAYHAMENMDGAKIEVSLREVDRGSDDHG 810

Query: 736 --------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
                   +++  V DTG G+    ++K  +P+         +G+GTGLGL +   ++  
Sbjct: 811 SSEILGDRQLLFSVSDTGAGIPPEIMDKIFEPYFTTKK----QGKGTGLGLAVVYGILKE 866

Query: 788 NMGKFYIFSTPAKGTLIEIIFPLYD 812
             G   I S   KG+   + FP+ +
Sbjct: 867 YGGDIRIESDVGKGSTFHLYFPMME 891



 Score =  135 bits (340), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 69/532 (12%), Positives = 158/532 (29%), Gaps = 45/532 (8%)

Query: 70  SENTFVFDPIPRTVRFTW-------NIDA------HGYLKEISEELPKTIGNYAFKMIGM 116
           S N F        +  +W       ++DA       G + + ++   + +G     M  +
Sbjct: 27  SGNLFRTKQGQAPMNQSWYTNLFEKHLDAIYLIGQDGRILDANKAACRALGVSKEMMRDL 86

Query: 117 RLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFS 176
            + D+     I+      +    +     ++T    EG     P+ +  +P ++ +    
Sbjct: 87  LIMDIDPNFCIESFQSFWEGHPNELPRVFESTHKNAEGAAY--PVQVMGIP-FTEHG--- 140

Query: 177 GFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM 236
             R FGI        +  A  +  +  F  L E  +    +     ++      P   + 
Sbjct: 141 HKRFFGIARDMSHRKEAEAKIREKESNFRELIETIEDMVFICTLSGEVVYAN--PFARKR 198

Query: 237 KNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS 296
                   +  A  D   +       T  ++++  ++DF  + L     ++         
Sbjct: 199 LGYSRDDFQNLAFWDLFPEDTHADARTFFKAAITTKQDFP-LPLRNRDGRRIASETCAWK 257

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKY 354
            +  E  +        +   E  +L        PI   + +   G     N +F+ +  Y
Sbjct: 258 GKWGEKDAIFLVSKDLSDLQENLHLFERLFRDNPILMALTTIPEGRFVDVNVAFINMLGY 317

Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
              + +        L   P+   N +     L R +         L  +  +      + 
Sbjct: 318 SKAEILGNTVANLGLFVHPEKQANVSK----LLRKNGNLNNVE--LQVVTKHGSILEGLF 371

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS-ILEATSDGIAIINREGI 473
                 +N  P             + R  +  +     +L + +L+   D + + + +G+
Sbjct: 372 SGEVVYSNGTP---YSLTAMSNITEQRKIESAL-----KLQAMVLDQIHDYVTVTDTKGV 423

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
           I   N AV    GY   +++    +  +                            +  T
Sbjct: 424 ITYVNNAVKTNLGYTQGELVG--LSTEVYGEKSGHGATQQEIFQKTLQDGRWHGEVVNRT 481

Query: 534 KEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKE 581
              + + L   ++K+   S           DI+E K+ +  L  +K+     
Sbjct: 482 IHGREVFLDSRVQKVFDDSGECIALCGVSTDITERKKIEQDLIKSKEQYVLA 533



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 30/275 (10%), Positives = 71/275 (25%), Gaps = 17/275 (6%)

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTK 353
            +  S E LS     +        ++      +K       +   G +  AN +      
Sbjct: 18  ENALSREGLSGNLFRTKQGQAPMNQSWYTNLFEKHLDAIYLIGQDGRILDANKAACRALG 77

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
                       +  LL      +         +      +    R+           A 
Sbjct: 78  VS-------KEMMRDLLIMDIDPNFCIESFQSFWEGHPNELP---RVFESTHKNAEGAAY 127

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
                        +    GI  +    +  + K+  +      ++E   D + I    G 
Sbjct: 128 PVQVMGIPFTEHGHKRFFGIARDMSHRKEAEAKIREKESNFRELIETIEDMVFICTLSGE 187

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
           ++  N    K  GY  +D     F     ++T +    +    ++       +       
Sbjct: 188 VVYANPFARKRLGYSRDDFQNLAFWDLFPEDTHADARTFFKAAITTKQ----DFPLPLRN 243

Query: 534 KEEKLLSLRIII--KKLPFSSCYSLTMHDISEWKQ 566
           ++ + ++        K        L   D+S+ ++
Sbjct: 244 RDGRRIASETCAWKGKWGEKDAIFLVSKDLSDLQE 278



 Score = 65.0 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 19/137 (13%), Positives = 40/137 (29%), Gaps = 7/137 (5%)

Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522
           D I +I ++G IL  N+A  +  G   E +                   +          
Sbjct: 54  DAIYLIGQDGRILDANKAACRALGVSKEMMRDLLIMDIDPNFCIESFQSFWEG---HPNE 110

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEK 580
                 +     E     ++++           +     D+S  K+ + K+   +    +
Sbjct: 111 LPRVFESTHKNAEGAAYPVQVMGIPFTEHGHKRFFGIARDMSHRKEAEAKIREKESNFRE 170

Query: 581 ESSHKSD--FLARVSHE 595
                 D  F+  +S E
Sbjct: 171 LIETIEDMVFICTLSGE 187



 Score = 43.5 bits (101), Expect = 0.16,   Method: Composition-based stats.
 Identities = 21/150 (14%), Positives = 37/150 (24%), Gaps = 12/150 (8%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKM--IGMRLCDVSDILHIDPNNHIG----DLLKR 139
            W+ D H     +S    + IG    ++  I     D       D    +      LL +
Sbjct: 541 IWDWDLHDNSLFLSPRWKEMIGYCDEELPNIFSSFEDRLHPE--DKPVVLKYVENYLLGK 598

Query: 140 QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199
              +  +  L   +G+  Y  I      +   N     +R  G               ++
Sbjct: 599 TPAYSIEFRLRHKDGS--YRWIQARGEALRDENG--VPYRMAGSHTDITEQKSFEEKIQQ 654

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQS 229
             K  S  +               I     
Sbjct: 655 AQKMESIANLASGIAHDFNNILTPILGLAE 684


>gi|300863566|ref|ZP_07108512.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
 gi|300338433|emb|CBN53654.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
          Length = 1026

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 122/822 (14%), Positives = 253/822 (30%), Gaps = 122/822 (14%)

Query: 86   TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
             + ID  G       +  + IG    +++G  + ++      D  + I   L       G
Sbjct: 233  LFAIDTQGRFTFSEGKGLEAIGLQPGEVVGQFVSEL-YPDIPDTIDSINRALA-GEKVKG 290

Query: 146  KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
              T       +      L+  P+ +   E  G    G+        D   L K+++++  
Sbjct: 291  VITELA----DAVYESQLS--PVRNATGEVIGM--VGVSTEISDVYDELRLRKQVEQQLQ 342

Query: 206  HLHEIKKG----------HSSVEKEKYDIFSQQSPPPHLRMKNKVSSL------TEYYAH 249
               +  +G             V     D    +  P   R+             +E  + 
Sbjct: 343  QQAQFLQGIWDGVDYGIFVLDVLDGGADFRYVRFNPAMERITRLPIEFLLGKTISEALSL 402

Query: 250  KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR--- 306
                L  + +        ++  +E F+ IN ++         L++ + +  + +      
Sbjct: 403  DMATLYCQHFAEAIRYRKTISFEERFY-INSDETWWLLNVTPLRDRNLQIHQLVVTATNI 461

Query: 307  -NHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364
             N  +      E E+     V+      + V   G   + NP+   +  Y+  + I    
Sbjct: 462  TNSKAAEIALQESESKYRSLVNTSQDMIWSVDLEGRYTFVNPAVKKIYGYEPEEMIG--- 518

Query: 365  GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
                                                  I  +    + + F       + 
Sbjct: 519  ---RQFTDFIPPQQIQKDFEAFTCVLGGEALLQYESIQIAKDG-RLINLIFNAIALRGEA 574

Query: 425  PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
               +   GI  +    ++ +  +     +   ++E  +D I   + + I    +  +S L
Sbjct: 575  GNILGATGIASDISLRKLAEAALAESEAKFRRLVENANDLIYEHSIDSIFTYLSPKISDL 634

Query: 485  FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
             GY + ++L K F   +       +   L  I+    +Q          K+     +   
Sbjct: 635  IGYEISELLGKSFVPLIYPQDLPAVTAVLNCIIETGEKQA-GLELRTQHKDGSWHWITCN 693

Query: 545  IKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAE--------------------- 579
            I  +  +      +     DI + K  +  L H++                         
Sbjct: 694  ISPVKDAKGNIISFMGIARDIRDRKLVEETLRHSESQLRQQALDLELALRQLQRTQSQLI 753

Query: 580  --KESSHKSDFLARVSHEIRTPLTAIIG-------FSEVIK-----------------NQ 613
              ++ S     +A V+HEI  P+  I G       +++ +                   +
Sbjct: 754  QSEKMSSLGQLVAGVAHEINNPVNFIYGNLTYANDYTQNLLKLLQLYQTHYPEPVREIQE 813

Query: 614  RFGPLGNPRYIEYANYIDRS----GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
                      +E    I  S       +  IV  L   S+++  +M      V++ E + 
Sbjct: 814  EIEASDIEFLLEDLPKILSSMKVGSERIQQIVTSLRTFSRMDEAEMK----EVNIHEGID 869

Query: 670  EAISLVQLYANEKR----ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG--- 722
              + ++Q     K     I I   +   +P +      + Q+ +NILSNA+         
Sbjct: 870  STLMILQHRIKAKSDRPAINIIKEY-GKLPLVECSAGQLNQVFMNILSNALDALDERDAQ 928

Query: 723  ----------GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
                        I I T  ++   V +R+ D G G+    LE+   PF          G+
Sbjct: 929  RSINEMKQMPSSISIYTQVSNANYVEIRIIDNGPGIQKSVLERLFDPFFTTKA----VGK 984

Query: 773  GTGLGLPLAKAMV-DANMGKFYIFSTPAKGTLIEIIFPLYDT 813
            GTG+GL ++  ++ + + G     STP +G   +++ PL  +
Sbjct: 985  GTGMGLSISYQIITERHGGTLECISTPGEGAEFKVMIPLRPS 1026



 Score =  147 bits (371), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 70/543 (12%), Positives = 156/543 (28%), Gaps = 56/543 (10%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQNTWYG 145
           W  D       ++E   +  G     ++G    ++               ++        
Sbjct: 91  WLKDPESRYIAVNEPFARACGRTPEDIVGKTDFELWPAELAAKYREDDFQVIVSGQQKVV 150

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +  +    G N  + ++    PIYS   +  G  GFG      V        +       
Sbjct: 151 EEVVVDTLGNN--LWVETIKTPIYSE-GKIIGTTGFG--QDITVRKQREIALR--QVNEE 203

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPP---------HLRMKNKVSSLTEYYAHKDDVLKT 256
              EI+K  +++E+ +  + +  S  P              ++   L        +V+  
Sbjct: 204 LEAEIEKRTAALEQSESRLLTLLSSAPLILFAIDTQGRFTFSEGKGLEAIGLQPGEVVGQ 263

Query: 257 EKYPLLTSEESSLPEQEDFHT--------INLNQYTKKQYFGTLQNNSKESFEYLSHRN- 307
               L      ++                  L     +     ++N + E    +     
Sbjct: 264 FVSELYPDIPDTIDSINRALAGEKVKGVITELADAVYESQLSPVRNATGEVIGMVGVSTE 323

Query: 308 ----------HPSLSAYFDEGENLTPETVDKCPIPFFVYS------HGNLFYANPSFLLL 351
                        +     +         D      FV               NP+   +
Sbjct: 324 ISDVYDELRLRKQVEQQLQQQAQFLQGIWDGVDYGIFVLDVLDGGADFRYVRFNPAMERI 383

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411
           T+      +      +  LD   L   +  + +   +     I+   R +      E   
Sbjct: 384 TRLPIEFLLGKTISEALSLDMATLYCQHFAEAIRYRK----TISFEERFYINS--DETWW 437

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471
            +   P    N     +          +++  +  ++    +  S++  + D I  ++ E
Sbjct: 438 LLNVTPLRDRNLQIHQL--VVTATNITNSKAAEIALQESESKYRSLVNTSQDMIWSVDLE 495

Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
           G     N AV K++GY  E+++ + FT F+            T +L       L+  ++ 
Sbjct: 496 GRYTFVNPAVKKIYGYEPEEMIGRQFTDFIPPQQIQKDFEAFTCVL--GGEALLQYESIQ 553

Query: 532 STKEEKLLSLRIIIKKLPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
             K+ +L++L      L   +           DIS  K  +  L+ ++    +   + +D
Sbjct: 554 IAKDGRLINLIFNAIALRGEAGNILGATGIASDISLRKLAEAALAESEAKFRRLVENAND 613

Query: 588 FLA 590
            + 
Sbjct: 614 LIY 616



 Score = 67.7 bits (164), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 23/175 (13%), Positives = 61/175 (34%), Gaps = 5/175 (2%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
             +            ++ E +D ++ +  ++ +  Q+ S+L        + + E   ++ 
Sbjct: 43  AVEERTDRLQQSVTQLQQEILDRQLAEENLKKQERQIKSLLNNIPHIAWLKDPESRYIAV 102

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
           N   ++  G   EDI+ K           +       +++    ++ +E++ + +     
Sbjct: 103 NEPFARACGRTPEDIVGKTDFELWPAELAAKYREDDFQVIVSGQQKVVEEVVVDTLGNN- 161

Query: 538 LLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
            L +  I   +         +    DI+  KQ +  L    +  E E   ++  L
Sbjct: 162 -LWVETIKTPIYSEGKIIGTTGFGQDITVRKQREIALRQVNEELEAEIEKRTAAL 215


>gi|312170866|emb|CBX79125.1| aerobic respiration sensor-response protein [Erwinia amylovora ATCC
           BAA-2158]
          Length = 779

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 85/436 (19%), Positives = 186/436 (42%), Gaps = 19/436 (4%)

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + +  +   L             L+       N + +     ++     E +       +
Sbjct: 81  EESRQRLERLVDKLEEMRKRDLELNQQMQ--GNIIRLNQEIADRIKAEEERLQVMARLKD 138

Query: 437 DVDTRINKR-KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
           ++  R   + ++E +   L S L+A+ D +   N +      NRA+  L G   + ++  
Sbjct: 139 EMSRREEAQIELEQQSSFLRSFLDASPDLVFYRNSDRQFSGCNRAMELLTGKSEKQLIGL 198

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSC 553
                 + +  + +     ++   ++  T E+        +    +R +    ++   S 
Sbjct: 199 SPKEVYDDDAATKVLETDEKVFHHNVSLTYEQWLQYPDGRKACFEIRKVPYYDRVGKRSG 258

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
                 DI+E K+ ++ L +        S  K+ F++ +SHE+RTPL  I+G S ++ + 
Sbjct: 259 LMGFGRDITERKRYQDALEN-------ASREKTTFISTISHELRTPLNGIVGLSRILLDS 311

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
                 +   ++Y   I  S   + +I ND++++ K+E  K+ L  +P+     +++  +
Sbjct: 312 HL----DQEQLKYLKTIHVSAITLGNIFNDVIEMDKMERRKVQLDTQPMDFTGFLADLEN 367

Query: 674 LVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
           +  L    K +         +P  ILAD   ++QI  N++ NA+ FT  G +I++   + 
Sbjct: 368 ISGLLVEPKGLKFVLETQPPLPHKILADGTRLRQILWNLIGNAVKFTRQG-EIVVRVGYQ 426

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMGK 791
           S E +   V+D+G+G+   E +K    + Q+ + +  +   GTG+GL +++ +  +  G 
Sbjct: 427 SEECLRFDVQDSGIGIPLDEQDKIFAMYYQVKDRRGGKPATGTGIGLAVSRRLAQSMGGD 486

Query: 792 FYIFSTPAKGTLIEII 807
             +   P KG+   +I
Sbjct: 487 ISVSGAPGKGSCFTLI 502



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/229 (11%), Positives = 59/229 (25%), Gaps = 16/229 (6%)

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHT--INLNQYTKKQYFGTLQNNSK 297
           +S + E        L+     L    +  L   +      I LNQ    +     +    
Sbjct: 73  LSVVVEQLEESRQRLERLVDKLEEMRKRDLELNQQMQGNIIRLNQEIADRIKAEEERLQV 132

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKS 356
            +                ++  +     +D  P   F  +        N +  LLT    
Sbjct: 133 MARLKDEMSRREEAQIELEQQSSFLRSFLDASPDLVFYRNSDRQFSGCNRAMELLTGKSE 192

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW---NRENSLAM 413
              I         L   ++ D++A     +  +D      +  L   QW           
Sbjct: 193 KQLIG--------LSPKEVYDDDAAT--KVLETDEKVFHHNVSLTYEQWLQYPDGRKACF 242

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
                   ++  +     G   +  + +  +  +E    +  + +   S
Sbjct: 243 EIRKVPYYDRVGKRSGLMGFGRDITERKRYQDALENASREKTTFISTIS 291


>gi|189466982|ref|ZP_03015767.1| hypothetical protein BACINT_03364 [Bacteroides intestinalis DSM
           17393]
 gi|189435246|gb|EDV04231.1| hypothetical protein BACINT_03364 [Bacteroides intestinalis DSM
           17393]
          Length = 712

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 86/380 (22%), Positives = 164/380 (43%), Gaps = 15/380 (3%)

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFG-YPVE 490
           I          +  +++    +  +L+  +  I + + +   +L  N+   +  G     
Sbjct: 197 IVSTATKRWQVETSLQLSQRTMQKVLDNINANIFVCDYDTQKVLFANKPFREEAGQVSEN 256

Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL-RIIIKKLP 549
               K     L           L  + +      +      +   E+  ++  + IK L 
Sbjct: 257 AECWKMLNAGLNGLCAHCPKPQL--LDANRKFTGVHFWEDYNPVTERWYTIQSMAIKWLD 314

Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                     DI+  KQ + +L  AK+ AE+    KS FLA +SHEIRTPL AI+GFS +
Sbjct: 315 GRWAIMELATDITTRKQVELELIQAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSL 374

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           +         +     Y + ++ +  L+L++++D+LDISKIE+G + L    V L     
Sbjct: 375 LAE-----ADDDERESYMSLVEENNELLLNLISDILDISKIEAGTVELTITRVDLPRLCR 429

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
           E IS      +E+ +++    ++    + AD   + Q+  N ++NA+ FT  G  + +S 
Sbjct: 430 EVISTCSHKKHEEAVVLCFDESSPQIMVDADKNRIMQVLSNFVTNALKFTTKGS-VTLSY 488

Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
              ++ +V   V DTG G+   +  +    F ++ +      +G GLGL + +++V+   
Sbjct: 489 RLENDTQVRFCVTDTGKGIPAEQQHEIFNRFVKLDSF----SQGAGLGLSICQSLVERMG 544

Query: 790 GKFYIFSTPAKGTLIEIIFP 809
           G+  + S   +G+      P
Sbjct: 545 GEIGVESREGEGSCFWFTHP 564


>gi|108756798|ref|YP_628526.1| sensory box histidine kinase [Myxococcus xanthus DK 1622]
 gi|108460678|gb|ABF85863.1| sensory box histidine kinase [Myxococcus xanthus DK 1622]
          Length = 689

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 103/655 (15%), Positives = 208/655 (31%), Gaps = 44/655 (6%)

Query: 185 HVNRVDNDPRALGKRLDKKF------SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKN 238
              R           L +         +      GH  +    +      +PPP   +  
Sbjct: 52  RSLREQLAEVPDSLALLEGLFTHSPVPYAVFTSDGHCLLTNPAFLAMFGAAPPPEYSLFK 111

Query: 239 KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY-----TKKQYFGTLQ 293
                   YA     + + +          + E          +      T      +  
Sbjct: 112 DELLAQLGYAKLLQRVVSGERVQTPVFWYDVKELAHVRAPAEARRIAISCTGFPLVASSG 171

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH--GNLFYANPSFLLL 351
             +  +  Y       +             +   + P+   V         +ANP    L
Sbjct: 172 GVTHLAVAYKDMTAELAAREAAQVERRNLLQVFTQAPVALSVLRGYELRYEFANPLLQKL 231

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411
              + ++       +  L  +P+L   +        R+       +              
Sbjct: 232 MGGRELNGRTQEEAIPDL--SPELLSLHRGVLETGERAIAREYPITIDYEGAGRVETRFW 289

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR- 470
            + F P    ++         +  +  +    ++ +E +   L ++L+     + + +  
Sbjct: 290 NIIFEPL--RDERGLVDGLVTLAFDVTEQVFARQAVESQQKWLEAVLDLMPMPVVMADPA 347

Query: 471 EGIILSTNRAVSKLFGYP-----VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
            G +  +N A  +L+G             + F    +     +    L    +    +  
Sbjct: 348 SGDLNFSNAAADRLYGLHIPKDVPTTAYGEHF-HVTDLEGRRLSVDDLPSNRAARGERLD 406

Query: 526 EKITLGSTKEEKL-LSLRIIIKKLPFSSCYSLT--MHDISEWKQEKNKLSHAKKIAEKES 582
                  T   +  LS+              +     DI+  K  +  L       ++  
Sbjct: 407 GLEVHWHTPAGRYALSISSETLPAMHGHPSVVVIPFLDITRLKTVEQHL-------QEAV 459

Query: 583 SHKSDFLARVSHEIRTPLTAI----IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
             + +FL+  SHE++TPLT++      F   I       L      E    + R    + 
Sbjct: 460 RARDEFLSVASHELKTPLTSLGLRLQSFVRAIHADPESALAQRHGRE-VEAMRRQVTRLA 518

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
           ++V+ LLD+S+I +G++ L FEPV L   VSE  +  +L A      +  + A     + 
Sbjct: 519 ELVDGLLDVSRISTGRLKLQFEPVDLPSLVSEVAARFELEAARAGCELHVTQAEGFEGVW 578

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
            D   ++Q+  N+LSNA+ +  +G  + I           LRV+D G+G+      +  +
Sbjct: 579 -DRLRLEQVVSNLLSNALKYG-AGAPVHIDVAPGGMG-ARLRVKDRGIGIDPEAHARIFQ 635

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
            F +  +  +    G GLGL + + +V+A  G   + S P +G    +  PL   
Sbjct: 636 KFERAVS--ERNYGGMGLGLYVTRTLVEALGGTIQVDSQPGEGATFVVELPLQPA 688



 Score = 45.0 bits (105), Expect = 0.056,   Method: Composition-based stats.
 Identities = 44/341 (12%), Positives = 100/341 (29%), Gaps = 54/341 (15%)

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI---EVMQLCSILEAT 461
           W  +  +A+                     P   + R  + ++      +  L  +   +
Sbjct: 16  WTGQPGVALLGPGPVATRTGQHWSQDTRSRPAVTEPRSLREQLAEVPDSLALLEGLFTHS 75

Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
               A+   +G  L TN A   +FG              L           L  ++S + 
Sbjct: 76  PVPYAVFTSDGHCLLTNPAFLAMFGAAPPPEYSLFKDELLA---QLGYAKLLQRVVSGER 132

Query: 522 RQTLEKITLGST-------KEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNK 570
            QT                 E + +++      L  SS      ++   D++     +  
Sbjct: 133 VQTPVFWYDVKELAHVRAPAEARRIAISCTGFPLVASSGGVTHLAVAYKDMTAELAAREA 192

Query: 571 LSHAKKIAEKESSHKSDFLARV-SHEIR----TPLTAIIGFSEVIK---------NQRFG 616
               ++   +  +     L+ +  +E+R     PL       + +           +   
Sbjct: 193 AQVERRNLLQVFTQAPVALSVLRGYELRYEFANPL------LQKLMGGRELNGRTQEEAI 246

Query: 617 PLGNPRYIEYANYIDRSGNLVLD----IVNDLLDISKIESGKMNLHFEP----------- 661
           P  +P  +     +  +G   +     I  D     ++E+   N+ FEP           
Sbjct: 247 PDLSPELLSLHRGVLETGERAIAREYPITIDYEGAGRVETRFWNIIFEPLRDERGLVDGL 306

Query: 662 VSLD-EAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701
           V+L  +   +  +   + + +K +         +P ++AD 
Sbjct: 307 VTLAFDVTEQVFARQAVESQQKWLEAVLDLMP-MPVVMADP 346


>gi|39997626|ref|NP_953577.1| sensory box histidine kinase [Geobacter sulfurreducens PCA]
 gi|39984518|gb|AAR35904.1| sensory box histidine kinase [Geobacter sulfurreducens PCA]
 gi|298506565|gb|ADI85288.1| sensor histidine kinase, HAMP, PAS and PAS domain-containing
            [Geobacter sulfurreducens KN400]
          Length = 1053

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 110/782 (14%), Positives = 234/782 (29%), Gaps = 80/782 (10%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL----KRQNTWY 144
            +D    ++ ++      +G    +++GM +  V      D      + L    +   +  
Sbjct: 282  VDTRAAIRRVNRAALTMLGYDEEQLLGMPVG-VIFAWERDKERLRTEGLRCFVESIGSSP 340

Query: 145  GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
             + T    +      P+ L+A P+  R+  F G     +              +  ++  
Sbjct: 341  AEFTFLSSDER--RTPVLLSASPMLGRDGSFQGSVFVAV--DIGERKRTEQALRENEQHL 396

Query: 205  SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK----------------------VSS 242
             ++ +       V   +       +      +                         ++ 
Sbjct: 397  KNILDSIHAGILVIDPQDHRIVDANTFALDMIGAPKGLVVDRICHNFVCSAVQGACPITD 456

Query: 243  LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTIN-------LNQYTKKQYFGTL-QN 294
            L E   + +  L       +   +S +P       +          +   ++    L + 
Sbjct: 457  LLENMDNSERRLLRFDGTSIPILKSVVPVTYQGRKLLIESFIDISERKWAEEMLRYLTEG 516

Query: 295  NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLL-TK 353
             +  + E         LS+            +D  P           +  N     +   
Sbjct: 517  TASVTGEEFFRSLVRRLSSALGTRFAFVTRLLDGSPARM---RTLAFWTGNGYCPTMEMP 573

Query: 354  YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
                    +      L     L         M      + +               ++  
Sbjct: 574  LNGTPCERVIADSDILFHPSGLGQLYPSAETMKRMGVESFLGVPLFDSRGTAIGHLAVLD 633

Query: 414  TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
                 E                 +++       +     +   + E  +D I  ++  G 
Sbjct: 634  DKPMREDEGHRSLLRIFAARAGAELERMRWDEALRESETRYKDLFENANDLIQSVSPSGE 693

Query: 474  ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
            IL  NRA  +  GY  E++    F   ++             ++    +           
Sbjct: 694  ILYVNRAWRETLGYSEEEVKGLTFDQIIDPECIGHCMGEFRRVMEG--QSLEAVEARFMA 751

Query: 534  KEEKLLSLRIIIKKLPFSSCYSL---TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
            K+ + + +   +                 DI+E K  ++ L       E+ +    DF  
Sbjct: 752  KDGRSILVEGSVNCNVVDGKPLASRGIFRDITERKHHEDTLRKYATELEQTNEELKDFAY 811

Query: 591  RVSHEIRTPLTAIIGFS---------------------EVIKNQRFGPLGNPRYIEYANY 629
             VSH++R PL +I GFS                     E++  +R   L      E   +
Sbjct: 812  IVSHDLRAPLVSIKGFSMELVTAMDELRGVIAELSPNIEMMTRERLRRLFEQDIDEAVGF 871

Query: 630  IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
            I+ S   +  ++  +L++S++  G+  L  EPV +   V   +  +       R  +   
Sbjct: 872  INSSSQRMDTLITAILNLSRL--GRRELKTEPVDMGAVVRSILDSLAHQIETNRTEVAIR 929

Query: 690  FANNIPRILADLRSVKQIALNILSNAIHFTPSG--GQIIISTTHTSNEEVILRVRDTGVG 747
               ++P I AD  +++QI  N+L N++ +   G  G++ I       EE +  V+D G G
Sbjct: 930  ---DLPVITADRIAMEQIMGNLLDNSLKYLEPGRPGRLEI-WADVGGEECVFHVKDNGRG 985

Query: 748  MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
            +   E+ +  + F +     +    G G+GL   K +V    G+ +  S P  G+     
Sbjct: 986  IREEEIPRVFELFRRA---GRQDVPGEGMGLAFVKTLVRRLGGRIWCESEPGVGSTFSFT 1042

Query: 808  FP 809
             P
Sbjct: 1043 LP 1044



 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 33/338 (9%), Positives = 91/338 (26%), Gaps = 25/338 (7%)

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
           V           + L       L    +S        +++L+          + +     
Sbjct: 196 VLLAAPAITFVANRLLIRPLEELRGMVTSF----AGGSLDLSGLPDYDAGDEIGSLCASF 251

Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVD 358
              +      ++        +     ++       V      +   N + L +  Y    
Sbjct: 252 RSMVEGLQETTV------SRDYVDNIIESMSDCLIVVDTRAAIRRVNRAALTMLGYDEEQ 305

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
            + +  G+          D   ++   L     +  ++ A    +  + E    +     
Sbjct: 306 LLGMPVGV----IFAWERDKERLRTEGLRCFVESIGSSPAEFTFLSSD-ERRTPVLLSAS 360

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR-EGIILST 477
               +         +  +  + +  ++ +      L +IL++   GI +I+  +  I+  
Sbjct: 361 PMLGRDGSFQGSVFVAVDIGERKRTEQALRENEQHLKNILDSIHAGILVIDPQDHRIVDA 420

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
           N     + G P   ++ +    F+               ++  L             +  
Sbjct: 421 NTFALDMIGAPKGLVVDRICHNFVCSAVQGACP------ITDLLENMDNSERRLLRFDGT 474

Query: 538 LLSLRIIIKKLPFSSCYSLT--MHDISEWKQEKNKLSH 573
            + +   +  + +     L     DISE K  +  L +
Sbjct: 475 SIPILKSVVPVTYQGRKLLIESFIDISERKWAEEMLRY 512



 Score = 75.8 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 42/329 (12%), Positives = 84/329 (25%), Gaps = 16/329 (4%)

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
               + +L   E    I  +     +       +     E L  R         +    +
Sbjct: 74  TGERDEALRANELGREIVTSLARVAELTREDTEHRYGDVEALKSRYEAYFRKATELYPRV 133

Query: 322 TPETVDKCPIPFF-VYSHGNLFYAN-PSFLLLTKYKSVDDIEIAGGLST-----LLDAPK 374
              T          + + G L   +               IE    L+      L     
Sbjct: 134 LGSTDTFLSGEIARLGADGRLILVDFERMSRDYVTSVEHQIERNRALARDTSIYLFVLFG 193

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
           +    A   +    +             +      SL ++ +P   A     ++  +   
Sbjct: 194 MVVLLAAPAITFVANRLLIRPLEELRGMVTSFAGGSLDLSGLPDYDAGDEIGSLCASFRS 253

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
                     ++  +    + +I+E+ SD + +++    I   NRA   + GY  E +L 
Sbjct: 254 M-----VEGLQETTVSRDYVDNIIESMSDCLIVVDTRAAIRRVNRAALTMLGYDEEQLLG 308

Query: 495 KPFTVFLEQNTPSVMN--HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS- 551
            P  V               L   +        E   L S +    + L           
Sbjct: 309 MPVGVIFAWERDKERLRTEGLRCFVESIGSSPAEFTFLSSDERRTPVLLSASPMLGRDGS 368

Query: 552 -SCYSLTMHDISEWKQEKNKLSHAKKIAE 579
                    DI E K+ +  L   ++  +
Sbjct: 369 FQGSVFVAVDIGERKRTEQALRENEQHLK 397


>gi|171322587|ref|ZP_02911366.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           ambifaria MEX-5]
 gi|171092081|gb|EDT37503.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           ambifaria MEX-5]
          Length = 1001

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 110/625 (17%), Positives = 217/625 (34%), Gaps = 38/625 (6%)

Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255
                 +    +   + G   +     D            +  +V +L   +  K  + +
Sbjct: 149 RLLAQSEVTGTMPAQQPGDPGMGGYLIDPDGNFVIVAGYPLVKQVLALPPGFDIKALIRQ 208

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
            +  P   S  +    ++       +    +     +Q       + ++     +  A  
Sbjct: 209 LQPPPEFISAAAESDYRKILLDRREDPLVGRSVLRFVQAVRDAQGKPIAWFALVTRPAID 268

Query: 316 DEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
           D   + +         P      G    A+P+       +++D  + AG     +    +
Sbjct: 269 DFLRSSSVGKDYALVAPGAQVLTGR--EADPALTA----RALDFAQGAGDERAAVHRVGM 322

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
           +     +      +     +  +    +      ++ +  +                +  
Sbjct: 323 NLVIGDQMAGFRAALIATFSWRSLFDDVAARLGIAIGLAVLAI------GTVWFAIVMFD 376

Query: 436 EDVDTRINKR--KMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDI 492
                 +N+R  ++        +++     G+ +++   G  +  N A         E  
Sbjct: 377 RRALRPVNRRTIRLIESEALNRTLIRTAPAGLMLLSLANGDTMVRNEAAQAFDATGTEPS 436

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEK-LLSLRIIIKKLPF 550
           L K                    I+     + +     +G   +    L+  I+  +   
Sbjct: 437 LGKRIWQAYHG-----------SIVGGRTPRVVTHELPVGLAGDGTAYLAAHIVRTRYRG 485

Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
                 T+ DI+  KQ +  L  A++ AE  +  KS FLA +SHEIRTPL AI+G  E++
Sbjct: 486 VDVLLCTLTDITAHKQMEGMLREAREAAEDANKAKSTFLATMSHEIRTPLNAIVGNLELM 545

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
           +     PL           +  S + +L ++ND+LD+SK+ES +M L   P  L   + +
Sbjct: 546 ER---APLPAEERRR-LQTVMSSSDALLRVINDVLDLSKVESNQMVLEAVPFDLRAVLRD 601

Query: 671 AISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
             ++ +  A  + + +       +    + D   ++QI  N++SNAI FT  G  + I  
Sbjct: 602 VAAIFRPLAAARHLALECRIDPQLADGYVGDPTRLRQIVSNLVSNAIKFTERGS-VTIEA 660

Query: 730 THT----SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
             T        V + VRDTG+G+    L      + Q   S   R  GTGLGLPL + + 
Sbjct: 661 RPTGAVGQAHGVEVVVRDTGIGIAPESLPTLFDVYVQTDASIYRRFGGTGLGLPLCRRLA 720

Query: 786 DANMGKFYIFSTPAKGTLIEIIFPL 810
               G   + + P +G    +  PL
Sbjct: 721 RLMHGDLAVETRPGEGATFIVSLPL 745


>gi|300867481|ref|ZP_07112132.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300334475|emb|CBN57300.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 1174

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 104/606 (17%), Positives = 211/606 (34%), Gaps = 86/606 (14%)

Query: 275 FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF 334
                  +  K          ++ +   +  R                   +   P   F
Sbjct: 329 LEHQGTPRNWKIDEQNFASYLAQMAALAMESRERKEAEKELRSVTERLQHLLAATPAVIF 388

Query: 335 VYSHG---NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR 391
                   ++ + + + + L  Y++ + ++ +      L  P+  +  A     L   + 
Sbjct: 389 SCKLDGNYDVTFVSENVVSLIGYEARELVDGSLD-WHSLVHPEDREMVATAYEQLLEKE- 446

Query: 392 TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE- 450
             I+   R             +        +     +   G   +  D +  +  ++ + 
Sbjct: 447 -SISYEYREQ---HKDGKYRWIYDEVKLVKDAAGVPVECVGYGVDITDRKHAEAALQQQL 502

Query: 451 ---------VMQLCSIL---EATSDGI------AIINREGIILSTNR------------- 479
                      ++ S L   E  +  +         +R  +I   N+             
Sbjct: 503 KRERLVNSIQERIRSSLNLEEVMTMAVEEVRKFLSTDRT-VIYRFNQDWSGFIAVESVAT 561

Query: 480 AVSKLFGYPVEDILRKP-------------FTVFLEQNTPSVMNHYLTEILSLD------ 520
            V ++ G  + D   +                     +      + L +           
Sbjct: 562 GVMQILGIDINDPCFRERYISVYQQGRVRAIDNIYTADISECHINLLNQFEIKANLVVPI 621

Query: 521 -LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM-----------HDISEWKQEK 568
              + L  + +      +       I+ L   +                  +I+E K  +
Sbjct: 622 LQAENLWGLLIAHHCSSQRQWHSSEIESLRQIAVQLAIAIQQCTLFEQAKTEIAERKLAE 681

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
             L  A   A+  +  KS+FL+ +SHE+RTPL AI+GFS+V+       L N    ++  
Sbjct: 682 QALRKAVIAADAANLAKSEFLSSMSHELRTPLNAILGFSQVMVRD--SSLKNEHQ-QHLQ 738

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I+R+G  +L ++ND+L++SKIE+GK  L+    +L   +     + +L A  K++ +  
Sbjct: 739 IINRAGEHLLSLINDILEMSKIEAGKSQLNEASFNLIRLLGTLEEIFRLKAESKKLQLIF 798

Query: 689 SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV-------ILR 740
             +  +P+ +  D   ++Q+ +N++ NAI FT +G  + +     S  E+          
Sbjct: 799 DLSKEVPQFVKGDEGKLRQVLINLVGNAIKFTETGS-VTLRVKLKSENEISSLALPLQFE 857

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           + DTG G+   E+ K   PF Q    Q+ + +GTGLGLP+++  V    G   + ST   
Sbjct: 858 IEDTGPGIAAEEMNKLFAPFEQTKTGQKSQ-QGTGLGLPISRKFVQMMGGDISVTSTVGL 916

Query: 801 GTLIEI 806
           G+    
Sbjct: 917 GSKFAF 922



 Score = 41.2 bits (95), Expect = 0.79,   Method: Composition-based stats.
 Identities = 16/144 (11%), Positives = 46/144 (31%), Gaps = 6/144 (4%)

Query: 78  PIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMR--LCDVSDILHIDPNNHIGD 135
                V F+  +D +  +  +SE +   IG  A +++        +      +      +
Sbjct: 381 AATPAVIFSCKLDGNYDVTFVSENVVSLIGYEARELVDGSLDWHSLVHPEDREMVATAYE 440

Query: 136 LLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA 195
            L  + +   +      +G   ++  ++    +           G+G+           A
Sbjct: 441 QLLEKESISYEYREQHKDGKYRWIYDEVKL--VKDAAGVPVECVGYGV--DITDRKHAEA 496

Query: 196 LGKRLDKKFSHLHEIKKGHSSVEK 219
             ++  K+   ++ I++   S   
Sbjct: 497 ALQQQLKRERLVNSIQERIRSSLN 520


>gi|148264166|ref|YP_001230872.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter
           uraniireducens Rf4]
 gi|146397666|gb|ABQ26299.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter
           uraniireducens Rf4]
          Length = 682

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 94/616 (15%), Positives = 211/616 (34%), Gaps = 43/616 (6%)

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
                    +V     ++   +      +      +  +  A  D +          +  
Sbjct: 86  TLSSDGAIQTVNLTGANLLGIERSLLANQRFEHFVADEDRPAFADFLRMVFLSRDKETCR 145

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
             L +       +      +      ++  +     +             + E    +  
Sbjct: 146 LKLSKD------DNQPLFVRIEATAAESGEECHAALMDITERRRAEEALRDSEYNLAKAQ 199

Query: 327 DKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
               +  +           +   L + +    +  + A        +    ++       
Sbjct: 200 TMSHVGSWRSDPLTGALNVSDEMLRILRLGHDEVTQEA------FASVVHPEDLDTVMDN 253

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
           L              H +      S  +  I     N   + +   G   +  + +  + 
Sbjct: 254 LRLGIEQGKNYEIE-HRLLLRDGTSKWVYTIVEPSVNAAGKVVKLYGTTQDITERKQVEV 312

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           ++  +  +L +I ++ +DGI I ++ G+I   N    +LF  P E +  +          
Sbjct: 313 ELRNQKNELQAIFDSVNDGIIIYDQNGLIQHLNHFCQQLF--PQEVLPGRSCRDIFHTEI 370

Query: 506 PSVMN-HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHD 560
           PS      +   L  +    +E   +   + +K   + I    +  +        +   D
Sbjct: 371 PSSPQNCPVERALRGER---VETSMVSVREGQKTTYIDITATSIEGAQGEKNRALVFFRD 427

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ-RFGPLG 619
           ++E + ++ +L    K+     S        V+HEI  PL+++ G++E +  + R  P  
Sbjct: 428 MTEKRFQELQLIQNDKM-----SSIGVLATGVAHEINNPLSSVAGYAEALLRRFRDEPAL 482

Query: 620 NPRYI-----EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     +Y   I R       I++ LL+  +   G +      V ++  + E + L
Sbjct: 483 GEDKRLAAFPKYLEVIIRESYHCKRIIDCLLNFGRKSDGSV----GRVDINGILLEILEL 538

Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
           ++   +   I + T+   NIP I  D   ++Q+ +N+L NA   +  GG + I+T  T +
Sbjct: 539 LRHQWSGGYIEVVTNLKKNIPLIHGDPTGLRQVCMNLLMNAHQASKEGGLVEITTDCTDD 598

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
           + V ++VRDTG G+    +++   PF          G+G GLGL +   +V ++ G+  +
Sbjct: 599 KMVCVKVRDTGCGIAQDVIDRIWDPFFTTK----EVGKGLGLGLAITYNIVKSHGGEISV 654

Query: 795 FSTPAKGTLIEIIFPL 810
            S   +G+   +  P+
Sbjct: 655 ESHIGEGSQFTLYLPV 670



 Score = 80.8 bits (198), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 27/189 (14%), Positives = 67/189 (35%), Gaps = 13/189 (6%)

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
            + Q  +E ++ + R +K ++E    +   + +    G   ++ +G I + N   + L G
Sbjct: 46  QIRQIELELQNEELRRSKEELETSRNKYALLYDFAPVGYFTLSSDGAIQTVNLTGANLLG 105

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
                +  + F  F+          +L  +     ++T          +   + +     
Sbjct: 106 IERSLLANQRFEHFVADEDRPAFADFLRMVFLSRDKETCRLKLSKDDNQPLFVRIEATAA 165

Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH--EIRT-PLTAI 603
           +          + DI+E ++ +  L        + +  K+     +SH    R+ PLT  
Sbjct: 166 ESGEE--CHAALMDITERRRAEEAL-----RDSEYNLAKAQ---TMSHVGSWRSDPLTGA 215

Query: 604 IGFSEVIKN 612
           +  S+ +  
Sbjct: 216 LNVSDEMLR 224



 Score = 45.0 bits (105), Expect = 0.057,   Method: Composition-based stats.
 Identities = 13/143 (9%), Positives = 43/143 (30%), Gaps = 5/143 (3%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYG 145
           W  D       +S+E+ + +     ++       V     +D   +++   +++   +  
Sbjct: 207 WRSDPLTGALNVSDEMLRILRLGHDEVTQEAFASVVHPEDLDTVMDNLRLGIEQGKNYEI 266

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +  L   +GT+ +V   +   P  +   +    + +G               +    +  
Sbjct: 267 EHRLLLRDGTSKWVYTIV--EPSVNAAGKVV--KLYGTTQDITERKQVEVELRNQKNELQ 322

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQ 228
            + +       +  +   I    
Sbjct: 323 AIFDSVNDGIIIYDQNGLIQHLN 345


>gi|303245671|ref|ZP_07331954.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
 gi|302492934|gb|EFL52799.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
          Length = 818

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 109/563 (19%), Positives = 203/563 (36%), Gaps = 100/563 (17%)

Query: 320 NLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
               +  D  P     V + G + +AN   + L             G S  L  P   D 
Sbjct: 10  RHFRQFCDALPEAALLVDAEGRVRHANAGAVRLFG--------NVCGHSCPLPGPSAQDG 61

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
              +                       +      +  I    A+     +       +  
Sbjct: 62  GDREWA---------------------DGGRLYHIRRIRLTAADGS---LFFLDWIRDAS 97

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
           +    + ++     Q  +I+E   +G+  I   G +   N  + +L GY    +L +PFT
Sbjct: 98  ELAALRGQLARCQRQFSTIVENVMEGV-TIAVNGKLAYVNPFMERLTGYDAATLLARPFT 156

Query: 499 VFLEQNTPSVMN-HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT 557
            FL +     +  ++   +             L    E + +       +   +      
Sbjct: 157 TFLHEEDRDGVLTNHKRRLAGQPAPPGQVFRILTRRGEARWVQAVSARIEWEDAPASLSL 216

Query: 558 MHDISEWKQEK----------------------------------------------NKL 571
           + DI+  +Q +                                               KL
Sbjct: 217 LSDITPQRQAQLALAELIRDQESRIASRTASLREANRTLETANERLTREIEEHERTARKL 276

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
           + A+K A + S  KS FLA +SHEIRTPL  I+G +++    R    G   ++     I 
Sbjct: 277 TAARKKASQASKAKSIFLANMSHEIRTPLNVILGMADLAL--RPDSQGQVDHVRALEMIR 334

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
            +G  +  ++ DLLD+S+IE+G+++L   P S    +  A+S   + A  + + +    A
Sbjct: 335 EAGASLRALLGDLLDLSRIEAGRLDLESIPFSPSRVLDAALSGHAVLAARQGLALEGHVA 394

Query: 692 NNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-----------VIL 739
           +++P  ++ D   + Q+  N++ NA+ FTP+G +I +       ++           ++ 
Sbjct: 395 SDVPETLVGDPGRLGQVLANLIGNALKFTPAG-RIDVFVRRGDGDKEGGCPEPEVVTLLF 453

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            VRDTGVG+   + +   + F Q   S   +  GTGLGL + + +V    G+  + S P 
Sbjct: 454 SVRDTGVGIDPEKRKAIFQSFRQADESITRQYGGTGLGLAICRRLVGLLGGRIRVASRPG 513

Query: 800 KGTLIEII----FPLYDTSHPHD 818
           +G+          P    + P +
Sbjct: 514 EGSEFSFTARFALPQPGQTAPAE 536



 Score = 43.5 bits (101), Expect = 0.17,   Method: Composition-based stats.
 Identities = 36/343 (10%), Positives = 74/343 (21%), Gaps = 39/343 (11%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID---------------PNNHIGDL 136
           +G L  ++  + +  G  A  ++             D               P   +  +
Sbjct: 129 NGKLAYVNPFMERLTGYDAATLLARPFTTFLHEEDRDGVLTNHKRRLAGQPAPPGQVFRI 188

Query: 137 LKRQN------------TWYGKT--TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFG 182
           L R+              W           + T         A  I  +    +      
Sbjct: 189 LTRRGEARWVQAVSARIEWEDAPASLSLLSDITPQRQAQLALAELIRDQESRIASRTASL 248

Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKE--KYDIFSQQSPPPHLRMKNKV 240
                 ++     L + +++      ++        +      IF            N +
Sbjct: 249 REANRTLETANERLTREIEEHERTARKLTAARKKASQASKAKSIFLANMSHEIRTPLNVI 308

Query: 241 SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF 300
             + +     D   + +    L     +           L+    +     L++      
Sbjct: 309 LGMADLALRPDSQGQVDHVRALEMIREAGASLRALLGDLLDLSRIEAGRLDLESIPFSPS 368

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNL--FYAN--PSFLLLTKYKS 356
             L             +G  L        P    V   G L    AN   + L  T    
Sbjct: 369 RVLDAALSGHAVLAARQGLALEGHVASDVPET-LVGDPGRLGQVLANLIGNALKFTPAGR 427

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399
           +D     G            +   +  +   R     I    R
Sbjct: 428 IDVFVRRGDGDK---EGGCPEPEVVTLLFSVRDTGVGIDPEKR 467


>gi|325981380|ref|YP_004293782.1| multi-sensor hybrid histidine kinase [Nitrosomonas sp. AL212]
 gi|325530899|gb|ADZ25620.1| multi-sensor hybrid histidine kinase [Nitrosomonas sp. AL212]
          Length = 916

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 82/260 (31%), Positives = 132/260 (50%), Gaps = 9/260 (3%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E  +   +L  AK+ AE  S  KS+FLA +SHEIRTP+  I+G +E++   +     N  
Sbjct: 247 EVTKRTAELVLAKESAEAASKAKSEFLATMSHEIRTPMNGILGMTELLLQTQL----NRD 302

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
              +A  +  SG  +L I+ND+LD SKIES  M L      L + + + +++    A++K
Sbjct: 303 QQRFAETVQSSGRHLLGIINDILDFSKIESDHMELESIDFDLVQLIEDTLAMFAQPADKK 362

Query: 683 RILIRTSF--ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EV 737
            + +   F   N    +  D   ++QI  N++SNAI FT  G  +I +    +      +
Sbjct: 363 GLELAAQFIPPNRAFMVRGDSFRLRQIFANLISNAIKFTSQGEVVIRTQLCEAAGSRVNL 422

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
            + V DTG+G+     +K  + F Q   S   +  GTGLGL + K +++   G  +I ST
Sbjct: 423 RICVEDTGIGIPPEYHKKIFQQFSQADGSTTRQYGGTGLGLTICKKLLELMGGSIHIDST 482

Query: 798 PAKGTLIEIIFPLYDTSHPH 817
           P +GT  +I   L  ++  H
Sbjct: 483 PGQGTKFQINLELEKSALEH 502


>gi|78221571|ref|YP_383318.1| multi-sensor signal transduction histidine kinase [Geobacter
           metallireducens GS-15]
 gi|78192826|gb|ABB30593.1| multi-sensor signal transduction histidine kinase [Geobacter
           metallireducens GS-15]
          Length = 482

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 73/363 (20%), Positives = 159/363 (43%), Gaps = 26/363 (7%)

Query: 450 EVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ-NTPS 507
           +  Q+ +I ++ +  + +++ +   +L  N+  ++LFG   E+   +P    ++   T  
Sbjct: 140 QFNQISTIFDSLNALVYVVDMDSYRLLYLNKYGAQLFG---ENWEGRPCHEVIQGGKTLP 196

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL-TMHDISEWKQ 566
                  ++L              +    +         +        +    DI+E K+
Sbjct: 197 CDFCTNDKLLLDGKALPPYIWEYKNMTTGRWYQCIDKAIRWTDDRLVRMEIAIDITERKE 256

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
            +                K + ++ VSHE+ TPLTA+IGF+E +       +   +    
Sbjct: 257 ME--------------RMKDEMISAVSHEMHTPLTAMIGFTEFLLENE---VDREQQKNC 299

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
              I +    + +++N+ L + ++++  +     PVS+      A +     A  ++  I
Sbjct: 300 LQTIHKETERLSELINNFLQLQRLKASMVKFRIMPVSVGL--LLADAAALYTAASRKHTI 357

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
                 ++P +  +   + Q+A N++SNAI ++P+GG + +      ++ V+  V+D GV
Sbjct: 358 VVECPPDLPPVRGNEEQLYQVAGNLISNAIKYSPAGGTVTLG-GRADDDMVVFWVKDNGV 416

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G++    E+  + F ++ NS + +  G GLGL L + +V A+ G+ ++ STP  G+   +
Sbjct: 417 GISPEFQERVFERFFRVDNSDRRKVGGAGLGLTLVREIVAAHGGRVWVESTPDAGSTFFV 476

Query: 807 IFP 809
             P
Sbjct: 477 SLP 479


>gi|209744224|gb|ACI70419.1| positive and negative sensor protein for pho regulon PhoR
           [Escherichia coli]
 gi|209744230|gb|ACI70422.1| positive and negative sensor protein for pho regulon PhoR
           [Escherichia coli]
 gi|320643768|gb|EFX12891.1| phosphate regulon sensor protein [Escherichia coli O157:H- str.
           493-89]
 gi|320649119|gb|EFX17697.1| phosphate regulon sensor protein [Escherichia coli O157:H- str. H
           2687]
 gi|320656012|gb|EFX23928.1| phosphate regulon sensor protein [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320662569|gb|EFX29958.1| phosphate regulon sensor protein [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320665139|gb|EFX32232.1| phosphate regulon sensor protein [Escherichia coli O157:H7 str.
           LSU-61]
          Length = 431

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 73/427 (17%), Positives = 150/427 (35%), Gaps = 37/427 (8%)

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             +L       I     L  + W     L +         +        G+    +  + 
Sbjct: 33  WFLLASVTGLLIWHFWNLLRLSW----WLWVDRSMTPPPGRGSWEPLLYGLHQMQLRNKK 88

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            +R++   + +  S  E+  D + +   EG I   N    ++ G    +   +     L 
Sbjct: 89  RRRELGNLIKRFRSGAESLPDAVVLTTEEGGIFWCNGLAQQILGLRWPEDNGQNILNLLR 148

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
               +               +   +         + L +R++           +   D++
Sbjct: 149 YPEFTQYL----------KTRDFSRPLNLVLNTGRHLEIRVMPYTHKQ---LLMVARDVT 195

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  Q +                + +F A VSHE+RTPLT + G+ E++  Q        +
Sbjct: 196 QMHQLEG--------------ARRNFFANVSHELRTPLTVLQGYLEMMDEQPLEGAVREK 241

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                + +      +  +V  LL +SKIE+    L  E V +   +       Q  + +K
Sbjct: 242 A---LHTMREQTQRMEGLVKQLLTLSKIEAAPTQLLNEKVDVPMMLRVVEREAQTLSQKK 298

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           +        N + ++  +   ++    N++ NA++ TP G  I +      +      V 
Sbjct: 299 Q-TFTFEIDNGL-KVSGNEDQLRSAISNLVYNAVNHTPEGTHITVRWQRVPHG-AEFSVE 355

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G G+    + +  + F ++  ++  +  G+GLGL + K  V+ +  +  I ST  KGT
Sbjct: 356 DNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHAVNHHESRLNIESTVGKGT 415

Query: 803 LIEIIFP 809
               + P
Sbjct: 416 RFSFVIP 422


>gi|188532466|ref|YP_001906263.1| aerobic respiration control sensor protein ArcB [Erwinia
           tasmaniensis Et1/99]
 gi|188027508|emb|CAO95355.1| Aerobic respiration control sensor protein ArcB [Erwinia
           tasmaniensis Et1/99]
          Length = 779

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 81/406 (19%), Positives = 176/406 (43%), Gaps = 17/406 (4%)

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR-KMEIEVMQLCSILEATSDGIA 466
            N   +     ++     E +       +++  R   + ++E +   L S L+A+ D + 
Sbjct: 110 GNITRLNQEIADRIKAEEERLQVMARLKDEMARREEAQIELEQQSSFLRSFLDASPDLVF 169

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
             N +      NRA+  L G     ++        +    + +     ++   ++  T E
Sbjct: 170 YRNSDRQFSGCNRAMELLTGKSERQLIGLSPREVYDDAAATKVLETDEKVFHHNVSLTYE 229

Query: 527 KITLGSTKEEKLLSLRIIIK--KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
           +        +    +R +    ++   S       DI+E K+ ++ L +        S  
Sbjct: 230 QWLQYPDGRKACFEIRKVPYYDRVGKRSGLMGFGRDITERKRYQDALEN-------ASRE 282

Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
           K+ F++ +SHE+RTPL  I+G S ++ +       +P  ++Y   I  S   + +I ND+
Sbjct: 283 KTTFISTISHELRTPLNGIVGLSRILLDTHL----DPEQLKYLKTIHVSAITLGNIFNDV 338

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRS 703
           +++ K+E  K+ L  +P+     +++  ++  L    K +         +P+ IL D   
Sbjct: 339 IEMDKMERRKVQLDNQPMDFTSFLTDLENISGLLVEPKGLRFVLEPQLPLPQKILVDGTR 398

Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
           ++QI  N++ NA+ FT  G +I++   + S E +   V+D+G+G+   E +K    + Q+
Sbjct: 399 LRQILWNLIGNAVKFTQQG-EIVVRVGYQSEECLRFDVQDSGIGIPQDEQDKIFAMYYQV 457

Query: 764 PNSQQIR-GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            +    +   GTG+GL +++ +  +  G   +   P +G+   +  
Sbjct: 458 KDRHGGKPATGTGIGLAVSRRLAQSMGGDISVTGAPGEGSCFSLTL 503



 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/229 (11%), Positives = 57/229 (24%), Gaps = 16/229 (6%)

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHT--INLNQYTKKQYFGTLQNNSK 297
           +S + E        L+     L    +  L   +        LNQ    +     +    
Sbjct: 73  LSVVVEQLEESRQRLERLVDKLEEMRKRDLELNQQMQGNITRLNQEIADRIKAEEERLQV 132

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKS 356
            +                ++  +     +D  P   F  +        N +  LLT    
Sbjct: 133 MARLKDEMARREEAQIELEQQSSFLRSFLDASPDLVFYRNSDRQFSGCNRAMELLTGKSE 192

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW---NRENSLAM 413
              I         L   ++ D+ A     +  +D      +  L   QW           
Sbjct: 193 RQLIG--------LSPREVYDDAAAT--KVLETDEKVFHHNVSLTYEQWLQYPDGRKACF 242

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
                   ++  +     G   +  + +  +  +E    +  + +   S
Sbjct: 243 EIRKVPYYDRVGKRSGLMGFGRDITERKRYQDALENASREKTTFISTIS 291


>gi|30263588|ref|NP_845965.1| sporulation kinase A [Bacillus anthracis str. Ames]
 gi|47528986|ref|YP_020335.1| sporulation kinase A [Bacillus anthracis str. 'Ames Ancestor']
 gi|49186436|ref|YP_029688.1| sporulation kinase A [Bacillus anthracis str. Sterne]
 gi|65320913|ref|ZP_00393872.1| COG0642: Signal transduction histidine kinase [Bacillus anthracis
           str. A2012]
 gi|165871086|ref|ZP_02215737.1| sporulation kinase A [Bacillus anthracis str. A0488]
 gi|167641500|ref|ZP_02399749.1| sporulation kinase A [Bacillus anthracis str. A0193]
 gi|170689539|ref|ZP_02880726.1| sporulation kinase A [Bacillus anthracis str. A0465]
 gi|170709172|ref|ZP_02899597.1| sporulation kinase A [Bacillus anthracis str. A0389]
 gi|177652421|ref|ZP_02934888.1| sporulation kinase A [Bacillus anthracis str. A0174]
 gi|190564914|ref|ZP_03017835.1| sporulation kinase A [Bacillus anthracis Tsiankovskii-I]
 gi|227813528|ref|YP_002813537.1| sporulation kinase A [Bacillus anthracis str. CDC 684]
 gi|229602000|ref|YP_002867831.1| sporulation kinase A [Bacillus anthracis str. A0248]
 gi|254686206|ref|ZP_05150065.1| sporulation kinase A [Bacillus anthracis str. CNEVA-9066]
 gi|254726028|ref|ZP_05187810.1| sporulation kinase A [Bacillus anthracis str. A1055]
 gi|254738679|ref|ZP_05196382.1| sporulation kinase A [Bacillus anthracis str. Western North America
           USA6153]
 gi|254752997|ref|ZP_05205033.1| sporulation kinase A [Bacillus anthracis str. Vollum]
 gi|254759268|ref|ZP_05211294.1| sporulation kinase A [Bacillus anthracis str. Australia 94]
 gi|30258223|gb|AAP27451.1| sporulation kinase A [Bacillus anthracis str. Ames]
 gi|47504134|gb|AAT32810.1| sporulation kinase A [Bacillus anthracis str. 'Ames Ancestor']
 gi|49180363|gb|AAT55739.1| sporulation kinase A [Bacillus anthracis str. Sterne]
 gi|164713297|gb|EDR18823.1| sporulation kinase A [Bacillus anthracis str. A0488]
 gi|167510582|gb|EDR85979.1| sporulation kinase A [Bacillus anthracis str. A0193]
 gi|170125927|gb|EDS94829.1| sporulation kinase A [Bacillus anthracis str. A0389]
 gi|170666496|gb|EDT17272.1| sporulation kinase A [Bacillus anthracis str. A0465]
 gi|172082095|gb|EDT67162.1| sporulation kinase A [Bacillus anthracis str. A0174]
 gi|190564231|gb|EDV18195.1| sporulation kinase A [Bacillus anthracis Tsiankovskii-I]
 gi|227005630|gb|ACP15373.1| sporulation kinase A [Bacillus anthracis str. CDC 684]
 gi|229266408|gb|ACQ48045.1| sporulation kinase A [Bacillus anthracis str. A0248]
          Length = 510

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 97/529 (18%), Positives = 199/529 (37%), Gaps = 39/529 (7%)

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTK 353
           +S +   + +                +     +  P     +   G + + NPS   +  
Sbjct: 7   SSTQKKRHPNISRRLRNHIQDRSLTEMYASLFEHNPDSIISLNLEGVILHINPSAEKILG 66

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
           Y S++ +E     S L       + +  + V+    +         + +I       L +
Sbjct: 67  YTSLE-LEQKNITSIL-------EAHISEQVLQNIKNTETDNQQEYILSICHKNGFLLDV 118

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
                    Q         ++P +   RI +  ++    +L +++ +    +   + EG 
Sbjct: 119 VTKLVPIFVQNRLTGVYAIMKPLEKSERI-ENMLKESEKRLRTLVNSMPAFVIFKDHEGR 177

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN----HYLTEILSLDLRQTLEKIT 529
            L  N      F +       K  +  ++ N            + E+     RQ L    
Sbjct: 178 WLEANDYALSCFNFHHVPYRGKKDSELIQYNEAYREAFLHCEEVDELAWQ-QRQILHGEE 236

Query: 530 LGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
               +++  L L +    L           +   D++E K+ +  L  ++K+A       
Sbjct: 237 FIIHRDDSDLILSMSKVPLYHPDGSRKGLIVMGRDVTELKETEKLLRKSEKLAVV----- 291

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
               A ++HEIR PLT++ GF  ++      P  N  +  Y + +    + +  I +  +
Sbjct: 292 GQLTAGIAHEIRNPLTSLKGFLTLLL-----PEINEEHKWYIDVMLSEISQMESITSQFM 346

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
            +SK +     L  +  ++   + E ++ +   A    + I     +    I  D   +K
Sbjct: 347 AMSKPQ----VLSIKTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYAHDIQCDGNQLK 402

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           Q+ +NIL NAI   P+GG I I T    +  +++R+ D G G+    + +  +PF     
Sbjct: 403 QVFINILKNAIEAMPNGGNIFIQTKPLEDTFILIRIIDEGCGIPEDRISRLGEPFY---- 458

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
              ++ +GTGLGL +   +++ + GK +I S   KGT+++I  PL  + 
Sbjct: 459 --SLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTIVDIQLPLSSSH 505



 Score = 38.9 bits (89), Expect = 4.2,   Method: Composition-based stats.
 Identities = 15/149 (10%), Positives = 43/149 (28%), Gaps = 15/149 (10%)

Query: 64  NTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPK--------TIGNYAFKMIG 115
                +SE               +  D  G   E ++              G    ++I 
Sbjct: 148 ENMLKESEKRLRTLVNSMPAFVIFK-DHEGRWLEANDYALSCFNFHHVPYRGKKDSELI- 205

Query: 116 MRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREF 175
            +  +      +          +++   +G+  +   + ++L +   ++ +P+Y  +   
Sbjct: 206 -QYNEAYREAFLHCEEVDELAWQQRQILHGEEFIIHRDDSDLILS--MSKVPLYHPDGSR 262

Query: 176 SGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            G    G         +   L ++ +K  
Sbjct: 263 KGLIVMG--RDVTELKETEKLLRKSEKLA 289


>gi|317127574|ref|YP_004093856.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           cellulosilyticus DSM 2522]
 gi|315472522|gb|ADU29125.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           cellulosilyticus DSM 2522]
          Length = 611

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 101/512 (19%), Positives = 197/512 (38%), Gaps = 36/512 (7%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
            S  +  +E +          P   +     G     NP+F  +  Y   + +       
Sbjct: 125 ESFQSELNESKERYKSLFKYNPDMIYSMDLDGYYTSVNPAFEQVLGYSKCELLNGKLNYQ 184

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
            L    KL +            +         +  +  + E  +          +   + 
Sbjct: 185 HLTPKEKLKETIRH---FNAAVEGEIQHYE--MPAVSKDGEVIMFDITNIPIVVD--GKI 237

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
           +   GI  +    + +++++ I   QL S +E   D I I + +  ++  N+A  K +G+
Sbjct: 238 VGVYGIAKDITARKKSEQELIITKKQLESFIENNVDPIFIYDLDDKLIKVNKAFEKTYGW 297

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
             E++L   +        P+ M   + + L L         T    K+  L+ + I    
Sbjct: 298 KKEEVLGLSYKDM--PVLPTNMYSNMQKDLKLFKMTFKSLETQRVKKDGSLIHVDISGFP 355

Query: 548 LPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
           +     +         D++E K  +  + +++K++           A ++HEIR PLTAI
Sbjct: 356 IHDEEGHIAAWAFIHRDLTETKMAEEMMINSEKLSIA-----GQLAAGIAHEIRNPLTAI 410

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
            GF ++++             +Y N I      +  I+++LL +SK +     +H+   +
Sbjct: 411 KGFLQLLRPDFVTKE------KYMNIISTEIERIEMIISELLILSKPQ----EIHYSKTN 460

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
           +   + E   L++  A  K + I T F      I  +   +KQ+ +N + NAI   P+GG
Sbjct: 461 IVSIIEEVKMLLETQAILKGVEINTEFYCENTYIYCEKNQLKQVCINFIKNAIEAMPNGG 520

Query: 724 QIIIS-TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
            + I+ T +     + +  +D G G+   ++ K   PF    +       GTGLG  ++K
Sbjct: 521 NLYINVTENREENGIFIHFKDEGKGIPKEKISKIGHPFYTTKSD------GTGLGFMVSK 574

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
            +V+ + G   I S    GT I +  P+   S
Sbjct: 575 RIVEHHEGYVEIDSELNVGTTITVFLPMEQLS 606



 Score = 46.9 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 14/81 (17%), Positives = 30/81 (37%), Gaps = 1/81 (1%)

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
           L + +  T   + +++ +G +L TNR+  + FGY  E + +      L           L
Sbjct: 14  LSTFI-HTPVAMMLVSLDGTVLKTNRSCQETFGYTEEQLEKLKLDEILHPEDIEQNTPLL 72

Query: 514 TEILSLDLRQTLEKITLGSTK 534
             +++ D         +    
Sbjct: 73  ERLITNDRPLKFNGRVIYGDG 93



 Score = 46.6 bits (109), Expect = 0.018,   Method: Composition-based stats.
 Identities = 21/181 (11%), Positives = 58/181 (32%), Gaps = 16/181 (8%)

Query: 55  TDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI 114
           T+++ +S  N +    ++ F ++P        +++D  GY   ++    + +G    +++
Sbjct: 123 TNESFQSELNESKERYKSLFKYNPD-----MIYSMDLDGYYTSVNPAFEQVLGYSKCELL 177

Query: 115 GMRLCDVSDILHIDPNNHIGDLLKR-QNTWYGKTTLWP---IEGTNLYVPIDLAALPIYS 170
             +L       H+ P   + + ++       G+   +    +      +  D+  +PI  
Sbjct: 178 NGKLN----YQHLTPKEKLKETIRHFNAAVEGEIQHYEMPAVSKDGEVIMFDITNIPIV- 232

Query: 171 RNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP 230
            + +  G   +GI                  K+     E       +      +      
Sbjct: 233 VDGKIVGV--YGIAKDITARKKSEQELIITKKQLESFIENNVDPIFIYDLDDKLIKVNKA 290

Query: 231 P 231
            
Sbjct: 291 F 291



 Score = 45.0 bits (105), Expect = 0.058,   Method: Composition-based stats.
 Identities = 19/123 (15%), Positives = 44/123 (35%), Gaps = 7/123 (5%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTW- 143
           F +  D    L ++++   KT G    +++G+   D+  +     +N   DL   + T+ 
Sbjct: 276 FIY--DLDDKLIKVNKAFEKTYGWKKEEVLGLSYKDMPVLPTNMYSNMQKDLKLFKMTFK 333

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +T     +G+ ++  +D++  PI+             I            +    +K 
Sbjct: 334 SLETQRVKKDGSLIH--VDISGFPIHDEEGHI--AAWAFIHRDLTETKMAEEMMINSEKL 389

Query: 204 FSH 206
              
Sbjct: 390 SIA 392


>gi|285019689|ref|YP_003377400.1| two-component system sensor-response regulator hybrid protein
           [Xanthomonas albilineans GPE PC73]
 gi|283474907|emb|CBA17406.1| putative two-component system sensor-response regulator hybrid
           protein [Xanthomonas albilineans]
          Length = 666

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 97/519 (18%), Positives = 197/519 (37%), Gaps = 37/519 (7%)

Query: 314 YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
                +    E  DK    F V     + +  P  +     +     E   G+  ++   
Sbjct: 12  LAQAKDLHYREIFDKIDYGFSVV---QVLFDGPRAVDYVFLEVNAAFERRTGMHDVVGRR 68

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
               + A + +   R     ++  +      +  E         F      PE       
Sbjct: 69  MRELSPAHEELWFQRYGEVALSGRSAKFE-SFAAEQGRWWAVDAFRI--GAPELCQIAVQ 125

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
             +  + +  +R +     +  ++ E     + +++  G +  TN A ++ FG  ++   
Sbjct: 126 FLDITERKRVERDLAESEARFSALAEGLPMPVWVLDVSGELRFTNTAYAEFFGIDMQADD 185

Query: 494 RKP-FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
            +P ++  L      V    L   L    ++ L  +      + +   + +       + 
Sbjct: 186 ARPSWSDVLHPEDAGVFAFELRNALCD--QRNLRALVRARRHDGQWRWVEMTAVPRYSAE 243

Query: 553 CYSLTMH----DISEWKQEK-------NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
              + +     D++E +  +            A+  AE  +  K +FLA +SHE+RTPLT
Sbjct: 244 GQFIGLAGSSPDVTERRDIELAREQLLESERTARNAAESMARLKDEFLATLSHELRTPLT 303

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
            I+G+S+++  +    L +    +  + I  S      +++D+LD+S +  GK+ L  E 
Sbjct: 304 TILGWSDLLLQRL---LPDDPSSKGLSVIASSARAQQRLISDMLDLSSMLLGKVQLEVEA 360

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           + L E V EA+   +  A+ K   +          +L D   ++Q+  N+LSNAI FTP+
Sbjct: 361 LDLAEQVREAMRAQEPVADGKDQALTLQAPLQPCMVLGDATRLQQVFWNLLSNAIKFTPA 420

Query: 722 GGQIIISTTHTSNEE-VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI------RGEGT 774
            G+I ++    ++ E V + VRD+G G+    L      F Q  ++          G   
Sbjct: 421 HGRIALTIEVDADGEHVNIAVRDSGDGIPADFLPHLFGRFRQADSTTTRLHGGLGLGL-- 478

Query: 775 GLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFPLYD 812
                + + +V+ + G+    S     G +  +  PL+ 
Sbjct: 479 ----AIVQQLVEMHGGQISAASEGRGCGAVFTVRLPLHR 513



 Score = 67.4 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 51/521 (9%), Positives = 117/521 (22%), Gaps = 46/521 (8%)

Query: 54  FTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM 113
           F D  +      +  +SE  F        +   W +D  G L+  +    +  G      
Sbjct: 126 FLDITERKRVERDLAESEARFSALAEGLPMP-VWVLDVSGELRFTNTAYAEFFGIDMQAD 184

Query: 114 IGM-RLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSR 171
                  DV            + + L  Q            +G   +  +++ A+P YS 
Sbjct: 185 DARPSWSDVLHPEDAGVFAFELRNALCDQRNLRALVRARRHDG--QWRWVEMTAVPRYSA 242

Query: 172 NREFSGFRGFG-IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP 230
             +F G  G    V   R     R      ++   +  E                 +   
Sbjct: 243 EGQFIGLAGSSPDVTERRDIELAREQLLESERTARNAAESMARLKDEFLATLSHELRTPL 302

Query: 231 PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINL--NQYTKKQY 288
              L   + +             L          +       +    +        +   
Sbjct: 303 TTILGWSDLLLQRLLPDDPSSKGLSVIASSARAQQRLISDMLDLSSMLLGKVQLEVEALD 362

Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSF 348
                  +  + E ++     +L+        +      +    F+      + +  P+ 
Sbjct: 363 LAEQVREAMRAQEPVADGKDQALTLQAPLQPCMVLGDATRLQQVFWNLLSNAIKF-TPAH 421

Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
             +     VD       ++       +  +        +R   +          +     
Sbjct: 422 GRIALTIEVDADGEHVNIAVRDSGDGIPADFLPHLFGRFRQADSTTTRLHGGLGLGLAIV 481

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468
             L         A                +   ++ ++   EV    +            
Sbjct: 482 QQLVEMHGGQISAASEGRGCGAVFTVRLPLHRDVSCKRPLREVRAFAT------------ 529

Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL--- 525
                ++        L G              L       M  YL  +L     + +   
Sbjct: 530 --SEKVVE----AYALKGMR-----------LLAVEDQPDMLDYLRRLLEAQGAEVVVAG 572

Query: 526 ---EKITLGSTKEEKLLSLRIIIKKLPFSSCY--SLTMHDI 561
              E + +        + + +    +P    Y    T+ +I
Sbjct: 573 SASEALEVLDDGGHTAIDVLVTDIGMPGMDGYGLIRTVREI 613



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/246 (8%), Positives = 60/246 (24%), Gaps = 10/246 (4%)

Query: 221 KYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINL 280
            Y      +        + V                 +     +      + E F     
Sbjct: 45  DYVFLEVNAAFERRTGMHDVVGRRMRELSPAHEELWFQRYGEVALSGRSAKFESFAAEQG 104

Query: 281 NQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HG 339
             +    +        + + ++L       +     E E       +  P+P +V    G
Sbjct: 105 RWWAVDAFRIGAPELCQIAVQFLDITERKRVERDLAESEARFSALAEGLPMPVWVLDVSG 164

Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399
            L + N ++          D         L       ++  +    L  +        A 
Sbjct: 165 ELRFTNTAYAEFFGIDMQADDARPSWSDVL-----HPEDAGVFAFELRNALCDQRNLRA- 218

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR---INKRKMEIEVMQLCS 456
           L   + +      +      + +   + +   G  P+  + R   + + ++        +
Sbjct: 219 LVRARRHDGQWRWVEMTAVPRYSAEGQFIGLAGSSPDVTERRDIELAREQLLESERTARN 278

Query: 457 ILEATS 462
             E+ +
Sbjct: 279 AAESMA 284


>gi|17229771|ref|NP_486319.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17131370|dbj|BAB73978.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 1299

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 135/707 (19%), Positives = 244/707 (34%), Gaps = 102/707 (14%)

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244
              +             +    L +  +    V +E  D F    PP  L+  +   +L 
Sbjct: 165 TELQTTALRLRTLIESLQSGILLEDANQHIILVNQEFCDYFRIPLPPQALQGMDCQQALE 224

Query: 245 E--YYAHKDDVLKTEKYPLLTSEESSLP---EQEDFHTINLNQYTKKQYFGTLQNNSKES 299
              +   + +        ++   +  L    E +D  T+  N                  
Sbjct: 225 ASKHLFTEPERFICTTDEIIRQGKMFLHQEWELQDGRTLEQNYIPIVVDHK----LYGHL 280

Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSV 357
           ++Y     +          E      VD      + ++   G   Y +  +  +  Y  +
Sbjct: 281 WKYRDITQYKKSEVALRLSEERLKLAVDAVEEGLWDWNLVTGE-VYRSARWFTMLGYTPM 339

Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
           + I         L  P        + +   + D        RL     + E    +    
Sbjct: 340 E-IGNDIKFRDKLIHPDDIPLMQQRLISHLKGDTPFYEVEIRLLA--KSGEWRWILDRGK 396

Query: 418 FEKANQFPENMPQNGIEPE-----------------------DVDTRIN----KRKMEIE 450
               +     +   G   +                         +        ++ ++  
Sbjct: 397 LVSRDSQGRAIRMVGTHLDITQRKQAEQDLQQQYQHTLLLKQITEEIRQSLQWEKILKTT 456

Query: 451 VMQLCSILEATSDGIAIINREG---IILSTNRAVSKLFGYP---VEDILRKPFTVFLEQN 504
           V ++  IL+     I  IN +G   ++         + G+     +DI            
Sbjct: 457 VTEVQRILQVDRALIFQINSDGSGKVVQEA-----VMPGWSVTLDQDIYDPCLKDGYLNM 511

Query: 505 TPSVMNHYLTEILSLD-LRQTLEKITLGSTKEEKLLSLRII------------------- 544
                   + ++         +E +     K   ++ +R+                    
Sbjct: 512 YRDGRITAIADVYQGGLKPCYVEFLQQFQVKANLVVPIRVRRNLWGLLIVHQCDRPRQWT 571

Query: 545 ------IKKLPFSSCYSLTMHDI--SEWKQEK------NKLSHAKKIAEKESSHKSDFLA 590
                 +K L      +LT   +   E +Q +       +L+ AK++AEK +  KS+FLA
Sbjct: 572 ELELDLLKHLADQMGIALTQSQLLAQETRQAQLLALQNEELNVAKQVAEKANMAKSNFLA 631

Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650
            +SHEIRTP+ AIIG S ++ +    P       +Y   I  S + +L I+ND+LD SKI
Sbjct: 632 TMSHEIRTPMNAIIGMSGLLLDTTLKP----EQFDYVETIRNSSHTLLTIINDILDFSKI 687

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIAL 709
           ESGK+ L  +P  L   V EA+ L+   A  K I +      + P  ++ D+  ++QI  
Sbjct: 688 ESGKLELEEQPFDLRLCVEEALDLLAPQAASKGIELMYQLEPDTPTLVVGDITRIRQILW 747

Query: 710 NILSNAIHFTPSGGQIIISTTHTS---------NEEVILRVRDTGVGMTNYELEKAMKPF 760
           N++SNA+ FT  G +I I+                E    V+DTG+G+    L +  KPF
Sbjct: 748 NLVSNAVKFTKIG-EICITIGAKQKIYKQTDPTRYEFQFAVQDTGIGIERDRLHRLFKPF 806

Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
            Q+  S   R  GTGLGL ++K + +   GK ++ S   +G++    
Sbjct: 807 SQVDASMTRRYGGTGLGLAISKRLSEIMGGKMWVESQSHQGSIFYFT 853



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/159 (13%), Positives = 54/159 (33%), Gaps = 11/159 (6%)

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY--PVEDILR 494
               +  K +++   ++L +++E+   GI + +    I+  N+     F    P + +  
Sbjct: 157 TTKLKDQKTELQTTALRLRTLIESLQSGILLEDANQHIILVNQEFCDYFRIPLPPQALQG 216

Query: 495 KPFTVFLEQN-----TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
                 LE +      P        EI+       L +       + + L    I   + 
Sbjct: 217 MDCQQALEASKHLFTEPERFICTTDEIIRQGK-MFLHQEWELQ--DGRTLEQNYIPIVVD 273

Query: 550 FS-SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
                +     DI+++K+ +  L  +++  +       +
Sbjct: 274 HKLYGHLWKYRDITQYKKSEVALRLSEERLKLAVDAVEE 312


>gi|299821103|ref|ZP_07052991.1| sensor histidine kinase [Listeria grayi DSM 20601]
 gi|299816768|gb|EFI84004.1| sensor histidine kinase [Listeria grayi DSM 20601]
          Length = 610

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 83/401 (20%), Positives = 169/401 (42%), Gaps = 27/401 (6%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
               ++  E      +  + +     +   E E  +L S+L   +DG+   +R G ++  
Sbjct: 233 IYGYDEIGELAESFNMLTKRLQE--AQAMTEGERRKLSSVLSYMTDGVIATDRRGKVILI 290

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
           N    K+   P E+   K     L+          +    +L L +T+            
Sbjct: 291 NSPAEKMLRIPHEEANGKSIIDVLDIGEDYEFEDLMDIDEALTLDRTIYNKPFILKAN-- 348

Query: 538 LLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
                II ++  F +     +HDI++ ++               +  + DF++ VSHE+R
Sbjct: 349 ---FSIIQRETGFVNGVIAVLHDITDQEKV--------------NQERRDFVSNVSHELR 391

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TPLT++  + E +++  +         ++          ++ +VNDLL +S++++G+ +L
Sbjct: 392 TPLTSMNSYLEALRDGAW--EDKEIAPQFLEVTQNETERMIRLVNDLLKLSRMDAGRESL 449

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
               V+  +  +  I   +    +  I+           I  D   + Q+  NI+SNA  
Sbjct: 450 EKSFVNFTDFFNHIIDRFE-MMKKDTIMFIRHIPKLPIIIEIDEDKIMQVMDNIISNANK 508

Query: 718 FTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
           ++P GG+I       S+ ++ + V D G+G+ + +L+K    F ++  ++     GTGLG
Sbjct: 509 YSPDGGRISFYLKKWSD-KIQISVSDEGLGIPDEDLDKVFDRFFRVDKARSREMGGTGLG 567

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
           L +AK +++++ G  +      +GT I    P   +  P D
Sbjct: 568 LAIAKEVIESHGGHIWAERNNGRGTTIHFTLP--YSDLPED 606


>gi|309700661|emb|CBI99957.1| phosphate regulon two-component system, sensor kinase [Escherichia
           coli ETEC H10407]
          Length = 431

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 73/427 (17%), Positives = 151/427 (35%), Gaps = 37/427 (8%)

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             +L       I     L  + W     L +         +        G+    +  + 
Sbjct: 33  WFLLASVTGLLIWHFWNLLRLSW----WLWVDRSMTPPPGRGSWEPLLYGLHQMQLRNKK 88

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            +R++   + +  S  E+  D + +   EG I   N    ++ G    +   +     L 
Sbjct: 89  RRRELGNLIKRFRSGAESLPDAVVLTTEEGGIFWCNGLAQQILGLRWPEDNGQNILNLLR 148

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
               +               +   +         + L +R++           +   D++
Sbjct: 149 YPEFTQYL----------KTRDFSRPLNLVLNTGRHLEIRVMPYTHKQ---LLMVARDVT 195

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  Q +                + +F A VSHE+RTPLT + G+ E++  Q        +
Sbjct: 196 QMHQLEG--------------ARRNFFANVSHELRTPLTVLQGYLEMMNEQPLEGAVREK 241

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                + +      +  +V  LL +SKIE+   +L  E V +   +       Q  + +K
Sbjct: 242 A---LHTMREQTQRMEGLVKQLLTLSKIEAAPTHLLNEKVDVPMMLRVVEREAQTLSQKK 298

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           +        N + ++  +   ++    N++ NA++ TP G  I +      +      V 
Sbjct: 299 Q-TFTFEIDNGL-KVSGNEDQLRSAISNLVYNAVNHTPEGTHITVRWQRVPHG-AEFSVE 355

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G G+    + +  + F ++  ++  +  G+GLGL + K  V+ +  +  I ST  KGT
Sbjct: 356 DNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHAVNHHESRLNIESTVGKGT 415

Query: 803 LIEIIFP 809
               + P
Sbjct: 416 RFSFVIP 422


>gi|302035935|ref|YP_003796257.1| hypothetical protein NIDE0557 [Candidatus Nitrospira defluvii]
 gi|300603999|emb|CBK40331.1| protein of unknown function, putative Histidine kinase [Candidatus
           Nitrospira defluvii]
          Length = 949

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 79/247 (31%), Positives = 132/247 (53%), Gaps = 1/247 (0%)

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           ++   +L  A    ++    KS FLA VSHE+RTPLT+I+GF++ +     G L N +  
Sbjct: 561 RERTAELEAANAQLKQMDRLKSKFLAHVSHELRTPLTSIVGFADNMLEGLVGSL-NMKQE 619

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           +Y   I  +G  +  ++ DLLD+S++E+GK+ L FE V L   VS+ +  +   A  K +
Sbjct: 620 QYLTRIKANGTRLARMITDLLDLSRVEAGKLVLSFEQVCLPTLVSDVVEQLLPLAITKHL 679

Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744
            I     +    + AD   + QI  N+L NAI +TP GGQ+ +  +  +++   + +RD 
Sbjct: 680 NIELQSPDPELLVWADQDRLSQILTNLLDNAIKYTPDGGQVAVELSVDTHDMARIVIRDN 739

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G G+ +  L K   PF ++   ++ + +G GLGL + K +VD + G   + S   +GT  
Sbjct: 740 GQGIPSDALPKLFDPFFRVQQEERSQTKGLGLGLAIVKDLVDLHGGSITVRSEVDQGTEF 799

Query: 805 EIIFPLY 811
               PL+
Sbjct: 800 TFTLPLH 806


>gi|50913816|ref|YP_059788.1| hypothetical protein M6_Spy0470 [Streptococcus pyogenes MGAS10394]
 gi|94988066|ref|YP_596167.1| two-component sensor histidine kinase [Streptococcus pyogenes
           MGAS9429]
 gi|94991952|ref|YP_600051.1| two-component sensor histidine kinase VicK [Streptococcus pyogenes
           MGAS2096]
 gi|94993852|ref|YP_601950.1| two-component sensor histidine kinase VicK [Streptococcus pyogenes
           MGAS10750]
 gi|139474239|ref|YP_001128955.1| sensor histidine kinase [Streptococcus pyogenes str. Manfredo]
 gi|50902890|gb|AAT86605.1| VicK [Streptococcus pyogenes MGAS10394]
 gi|94541574|gb|ABF31623.1| two-component sensor histidine kinase [Streptococcus pyogenes
           MGAS9429]
 gi|94545460|gb|ABF35507.1| Two-component sensor histidine kinase VicK [Streptococcus pyogenes
           MGAS2096]
 gi|94547360|gb|ABF37406.1| Two-component sensor histidine kinase VicK [Streptococcus pyogenes
           MGAS10750]
 gi|134272486|emb|CAM30749.1| sensor histidine kinase [Streptococcus pyogenes str. Manfredo]
          Length = 450

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 90/406 (22%), Positives = 166/406 (40%), Gaps = 36/406 (8%)

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDT-RINKRKMEIEVMQLCSILEATSDGIAIINREG 472
            +          E M  +    +  D  R+    +  E  +L SIL   SDG+   +R G
Sbjct: 55  RYTDIIDEKADIELMELSDQLNDLSDVFRLTHENLAQEKNRLASILAYMSDGVLATDRSG 114

Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
            I+  N    K      E+ L+K  T  LE +T       +         +T        
Sbjct: 115 KIIMINETARKQLNLSKEEALKKNITDLLEGDTSYTYRDLV--------SKTPVVTVNSR 166

Query: 533 TKEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
               + +SLR+        S +     + +HD +E ++E+ +                 F
Sbjct: 167 NDMGEFVSLRLRFALNRRESGFISGLVVVLHDTTEQEKEERERRL--------------F 212

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
           ++ VSHE+RTPLT++  + E +     G L       +        N ++ +++DLL++S
Sbjct: 213 VSNVSHELRTPLTSVKSYLEAL---DEGALKEDIAPSFIKVSLDETNRMMRMISDLLNLS 269

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR-----ILIRTSFANNIPRILADLRS 703
           +I++    L  E  +    ++  ++   L  N+         I   +      +  D   
Sbjct: 270 RIDNQVTQLAVEMTNFTAFITSILNRFDLVKNQHTGTGKVYEIVRDYPITSVWLEIDNDK 329

Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
           + Q+  NIL+NAI ++P GG+I +    T   ++I+ + D G+G+   +L      F ++
Sbjct: 330 MTQVIENILNNAIKYSPDGGKITVRMKTTDT-QLIISISDQGLGIPKTDLPLIFDRFYRV 388

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             ++     GTGLGL +AK ++  + G  +  S   KG+   I+ P
Sbjct: 389 DKARSRAQGGTGLGLAIAKEIIKQHHGFIWAKSDYGKGSTFTIVLP 434


>gi|16128385|ref|NP_414934.1| sensory histidine kinase in two-component regulatory system with
           PhoB [Escherichia coli str. K-12 substr. MG1655]
 gi|89107270|ref|AP_001050.1| sensory histidine kinase in two-component regulatory system with
           PhoB [Escherichia coli str. K-12 substr. W3110]
 gi|170079986|ref|YP_001729306.1| sensory histidine kinase in two-component regulatory system with
           PhoB [Escherichia coli str. K-12 substr. DH10B]
 gi|238899688|ref|YP_002925484.1| sensory histidine kinase in two-component regulatory system with
           PhoB [Escherichia coli BW2952]
 gi|256023983|ref|ZP_05437848.1| phosphate regulon sensor protein [Escherichia sp. 4_1_40B]
 gi|300918222|ref|ZP_07134828.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 115-1]
 gi|300947952|ref|ZP_07162098.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 116-1]
 gi|300957962|ref|ZP_07170128.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 175-1]
 gi|301025775|ref|ZP_07189287.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 196-1]
 gi|301647318|ref|ZP_07247132.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 146-1]
 gi|307137042|ref|ZP_07496398.1| phosphate regulon sensor protein [Escherichia coli H736]
 gi|331640914|ref|ZP_08342049.1| phosphate regulon sensor kinase PhoR [Escherichia coli H736]
 gi|130131|sp|P08400|PHOR_ECOLI RecName: Full=Phosphate regulon sensor protein phoR
 gi|581188|emb|CAA28409.1| unnamed protein product [Escherichia coli K-12]
 gi|1657596|gb|AAB18124.1| phosphate regulon sensor protein phoR [Escherichia coli str. K-12
           substr. MG1655]
 gi|1786600|gb|AAC73503.1| sensory histidine kinase in two-component regulatory system with
           PhoB [Escherichia coli str. K-12 substr. MG1655]
 gi|16209156|gb|AAL09903.1| PhoR+ [CRIM plasmid pAH152]
 gi|16209169|gb|AAL09907.1| PhoR[Ec] [CRIM plasmid pAH156]
 gi|85674540|dbj|BAE76180.1| sensory histidine kinase in two-component regulatory system with
           PhoB [Escherichia coli str. K12 substr. W3110]
 gi|169887821|gb|ACB01528.1| sensory histidine kinase in two-component regulatory system with
           PhoB [Escherichia coli str. K-12 substr. DH10B]
 gi|213521172|gb|ACJ50527.1| PhoR [Escherichia coli]
 gi|238863533|gb|ACR65531.1| sensory histidine kinase in two-component regulatory system with
           PhoB [Escherichia coli BW2952]
 gi|260450413|gb|ACX40835.1| PAS/PAC sensor signal transduction histidine kinase [Escherichia
           coli DH1]
 gi|299879978|gb|EFI88189.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 196-1]
 gi|300315336|gb|EFJ65120.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 175-1]
 gi|300414607|gb|EFJ97917.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 115-1]
 gi|300452488|gb|EFK16108.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 116-1]
 gi|301074543|gb|EFK89349.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 146-1]
 gi|315135082|dbj|BAJ42241.1| phosphate regulon sensor protein [Escherichia coli DH1]
 gi|315616661|gb|EFU97278.1| phosphate regulon sensor kinase PhoR [Escherichia coli 3431]
 gi|323938584|gb|EGB34833.1| phosphate regulon sensor kinase PhoR [Escherichia coli E1520]
 gi|323943205|gb|EGB39361.1| phosphate regulon sensor kinase PhoR [Escherichia coli E482]
 gi|331037712|gb|EGI09932.1| phosphate regulon sensor kinase PhoR [Escherichia coli H736]
          Length = 431

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 73/427 (17%), Positives = 151/427 (35%), Gaps = 37/427 (8%)

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             +L       I     L  + W     L +         +        G+    +  + 
Sbjct: 33  WFLLASVTGLLIWHFWNLLRLSW----WLWVDRSMTPPPGRGSWEPLLYGLHQMQLRNKK 88

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            +R++   + +  S  E+  D + +   EG I   N    ++ G    +   +     L 
Sbjct: 89  RRRELGNLIKRFRSGAESLPDAVVLTTEEGGIFWCNGLAQQILGLRWPEDNGQNILNLLR 148

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
               +               +   +         + L +R++           +   D++
Sbjct: 149 YPEFTQYL----------KTRDFSRPLNLVLNTGRHLEIRVMPYTHKQ---LLMVARDVT 195

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  Q +                + +F A VSHE+RTPLT + G+ E++  Q        +
Sbjct: 196 QMHQLEG--------------ARRNFFANVSHELRTPLTVLQGYLEMMNEQPLEGAVREK 241

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                + +      +  +V  LL +SKIE+   +L  E V +   +       Q  + +K
Sbjct: 242 A---LHTMREQTQRMEGLVKQLLTLSKIEAAPTHLLNEKVDVPMMLRVVEREAQTLSQKK 298

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           +        N + ++  +   ++    N++ NA++ TP G  I +      +      V 
Sbjct: 299 Q-TFTFEIDNGL-KVSGNEDQLRSAISNLVYNAVNHTPEGTHITVRWQRVPHG-AEFSVE 355

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G G+    + +  + F ++  ++  +  G+GLGL + K  V+ +  +  I ST  KGT
Sbjct: 356 DNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHAVNHHESRLNIESTVGKGT 415

Query: 803 LIEIIFP 809
               + P
Sbjct: 416 RFSFVIP 422


>gi|262277330|ref|ZP_06055123.1| periplasmic sensor hybrid histidine kinase [alpha proteobacterium
           HIMB114]
 gi|262224433|gb|EEY74892.1| periplasmic sensor hybrid histidine kinase [alpha proteobacterium
           HIMB114]
          Length = 998

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 90/291 (30%), Positives = 141/291 (48%), Gaps = 6/291 (2%)

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
           +  E+I LG   E   +  R  I +L  S     +    D+   +++K  +S  K+ AE+
Sbjct: 444 EVSERIKLGYYSERARVQTRDEIGELSKSFNEMVNAVETDVIRREKDKQTVSVLKEEAEQ 503

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            +  KS FLA +SHE+RTP+ AIIG+SE++         +  YI     I+ +G  +L +
Sbjct: 504 ANKAKSAFLANMSHELRTPMNAIIGYSEILTEDATDN-QHQEYIPDLKKINSAGKHLLQL 562

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILAD 700
           +ND+LDISKIE+GKM L  + ++      E          +    ++     +I  I  D
Sbjct: 563 INDILDISKIEAGKMELDIQDINFTSLAQEVADTSDALVTKNGNTLKIIKDESIQGITGD 622

Query: 701 LRSVKQIALNILSNAIHFTPSGGQIII--STTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
              +KQI  N++SNA  FT   G I +   T    N  + + V+DTG+G+   +  K  +
Sbjct: 623 SVKIKQILFNLISNAAKFT-ENGTITLGYKTYQDDNNFLSIYVQDTGIGIEKDKAAKVFE 681

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            FGQ  +S   +  GTGLGL L K   +   G   + S   KG+   +  P
Sbjct: 682 EFGQADSSTTRKYGGTGLGLSLVKKFSELMGGSIKLESEIGKGSTFTVTIP 732


>gi|302874875|ref|YP_003843508.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           cellulovorans 743B]
 gi|307690508|ref|ZP_07632954.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           cellulovorans 743B]
 gi|302577732|gb|ADL51744.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           cellulovorans 743B]
          Length = 894

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 87/529 (16%), Positives = 185/529 (34%), Gaps = 30/529 (5%)

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKS 356
                                +      ++       ++   GN+   N S        S
Sbjct: 346 AIMCTRDVTERVKKDELIRMNKEQLESIIENMSDALVLFDKDGNITKVNKSARK-----S 400

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS--ARLHTIQWNRENSLAMT 414
           V        ++   +  K+ D N  + +    +    +     +R  TI    +N     
Sbjct: 401 VFRFAEGKKMNDHFNHAKIYDMNFKEILKENSAISRILKGEKLSRYQTIVQVGDNLTYTE 460

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKM--EIEVMQLCSILEATSDGIAIIN-RE 471
                  ++    +    +  +  D   +++ +  + +   L  I+E    G A  +  +
Sbjct: 461 ANGNPIYDKKSNFVGGVLVVYDITDRIKSEQTLLLKTQYNLLSRIIEDLDVGFARFSYPD 520

Query: 472 GIILSTNRAVSKLFGY------PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
             I+  N+                  +  K        +  S +   +  ++       +
Sbjct: 521 FRIIDFNQKYFNQLKLINPKLDSPASMKGKDPFGIFIFDEKSEVLQNIQNLIEKRGDSYV 580

Query: 526 EKITLGSTKEEKLLSLRIII--KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
                    EE+   +                    DI+E           K   E+   
Sbjct: 581 TNRKFIMDGEERFFRIIRQPLFGLNNQVIEVIQIAIDITEEVTA-------KNKMEETLR 633

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIK---NQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            + +  + +SHE++TPL  I   +++++             +  +  N I ++      +
Sbjct: 634 MQEEIFSNISHELKTPLNVIFSTNQLMELYFKNNCIEGNKEKVSKSINIIKQNCYRFTKL 693

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILAD 700
           +N+++D+SKI+SG   L+    ++     + +  +  Y   K + I          I  D
Sbjct: 694 INNIVDVSKIDSGFFELNLSNENIVNITEDIVQSISEYIEGKGLSIIFDTNVEEKTIACD 753

Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760
              +++I LN++SNAI F+   GQI+++      E V + V DTG+G+ +  L    + F
Sbjct: 754 PDKIERIILNLVSNAIKFSNPEGQILVNV-FDKGEFVEIIVEDTGIGIESKHLNNIFERF 812

Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            Q+  S     EG+G+GL L K++V+ + G   + S   KG+  +++ P
Sbjct: 813 HQVDKSLSRNAEGSGIGLSLVKSIVEMHGGSISVKSQVNKGSTFKVVLP 861


>gi|302344274|ref|YP_003808803.1| PAS/PAC sensor signal transduction histidine kinase [Desulfarculus
           baarsii DSM 2075]
 gi|301640887|gb|ADK86209.1| PAS/PAC sensor signal transduction histidine kinase [Desulfarculus
           baarsii DSM 2075]
          Length = 758

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 104/701 (14%), Positives = 235/701 (33%), Gaps = 58/701 (8%)

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRG-FGIVHVNRV----DNDPRALGKR 199
           G   L  + G+        A  P      +F G R  + +  +       + +     +R
Sbjct: 87  GLNLLIELTGSAKVRDRMAATKPPQVSTIDFVGARLLWDMFQLESEKLQVEREADEAVRR 146

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP---PPHLRMKNKVSSLTEYYAHKDDVLKT 256
                  + +      +V   +  +            LR    +                
Sbjct: 147 ERDWNQKVLDSLPDQIAVLDTERTVVGVNKTFLIESGLRKDQILGRKCFEVKPCPAESPA 206

Query: 257 EKYPLLTSE-----ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL----SHRN 307
            +      E       +          +  +  K+     + + +    + +        
Sbjct: 207 HQDHSCPFETVLREGRTASVVYATRGDDGAEVFKEVSAAPIFDQAGRLVQVIEGVRDVTR 266

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
             SL     + E    + ++       +    G   Y NP+   L+  +  D +  A   
Sbjct: 267 RVSLERELRQTEQRLRQFLEAAQDIICIKDMAGRYIYVNPAAGELSHRQPEDMVGRAD-- 324

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
           S L          A    ++         AS   +              + +   N   +
Sbjct: 325 SELFPEKMAKAMAAHDRAVI------ESGASMGFYEGTRVDGELRWFQTVRYPIFNDDGQ 378

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
               + +  +  + R  + ++      + +IL+ +SD I   + EG +++ + A  ++ G
Sbjct: 379 MAALSVMARDVTEERALQEEVRRNKEYMENILQNSSDMIITTDLEGRVVTFSPAGERMLG 438

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
           Y   +++ K         +P      + ++ +               K+ + + + + + 
Sbjct: 439 YSRGELVGKSIEGL--WQSPEERQSLMAQVQAKGA--VNNFTATLLAKDGRSVEVSLSLA 494

Query: 547 KLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
            L  S            D++E  + + +L  A+++A          +A ++H I+  L  
Sbjct: 495 LLRDSRGKVLGTVGVSKDVTEENRLRRQLIEAERLA-----AIGQTVAGLAHCIKNILNG 549

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           + G S  + N       +    E    + ++ N + ++  D+L  S+    +     +PV
Sbjct: 550 LKGGS-YLVNTGLKRQDSDLVNEGWRTVQKAINRIGNLSLDMLSYSR----ERKPELQPV 604

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT--- 719
           +L E +S  + LV   A  + +  +T+       +L D  ++ +  +N+++NA+      
Sbjct: 605 ALGEFISGTMDLVAKAAELEGVRFQTTVERE-RVVLMDPTAMSRALMNLITNAVDACQDV 663

Query: 720 --PSG--GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
             P+G  G + I         +++RV D G GM+     +  + F     S+     GTG
Sbjct: 664 ERPAGRAGLVGIDVGVRD-GYLLMRVSDNGPGMSAELRSRLFQRFFSTKGSR-----GTG 717

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           LGL +++ +V  + G   + S+P +G+   I  PL     P
Sbjct: 718 LGLAVSQKIVGEHGGTIDVESSPGQGSTFTIRLPLATPEKP 758



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/383 (9%), Positives = 106/383 (27%), Gaps = 29/383 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD-----ILHIDPNNHIGDLLKRQNTW 143
           +D    +  +++      G    +++G +  +V         H D +     +L+   T 
Sbjct: 165 LDTERTVVGVNKTFLIESGLRKDQILGRKCFEVKPCPAESPAHQDHSCPFETVLREGRTA 224

Query: 144 YGKTTLWPIEGTN-LYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
                ++   G +   V  +++A PI+ +       +    V             ++ ++
Sbjct: 225 S---VVYATRGDDGAEVFKEVSAAPIFDQAGRLV--QVIEGVRDVTRRVSLERELRQTEQ 279

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL--RMKNKVSSLTEYYAHKDDVLKTEKYP 260
           +     E  +    ++               L  R    +    +     + + K     
Sbjct: 280 RLRQFLEAAQDIICIKDMAGRYIYVNPAAGELSHRQPEDMVGRADSELFPEKMAKAMAAH 339

Query: 261 LLTSEESSLPEQ-EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
                ES       +   ++      +     + N+  +           +      E  
Sbjct: 340 DRAVIESGASMGFYEGTRVDGELRWFQTVRYPIFNDDGQMAALSVMARDVTEERALQEEV 399

Query: 320 NL----TPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
                     +             G +   +P+   +  Y   + +     +  L  +P+
Sbjct: 400 RRNKEYMENILQNSSDMIITTDLEGRVVTFSPAGERMLGYSRGELVGK--SIEGLWQSPE 457

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
                    +   ++       +A L         S+ ++       +   + +   G+ 
Sbjct: 458 ----ERQSLMAQVQAKGAVNNFTATLLA---KDGRSVEVSLSLALLRDSRGKVLGTVGVS 510

Query: 435 PEDVDTRINKRKMEIEVMQLCSI 457
            +  +    +R++ IE  +L +I
Sbjct: 511 KDVTEENRLRRQL-IEAERLAAI 532


>gi|300997413|ref|ZP_07181753.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 200-1]
 gi|300304232|gb|EFJ58752.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 200-1]
          Length = 431

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 73/427 (17%), Positives = 150/427 (35%), Gaps = 37/427 (8%)

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             +L       I     L  + W     L +         +        G+    +  + 
Sbjct: 33  WFLLASVTGLLIWHFWNLLRLSW----WLWVDRSMTPPPGRGSWEPLLYGLHQMQLRKKK 88

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            +R++   + +  S  E+  D + +   EG I   N    ++ G    +   +     L 
Sbjct: 89  RRRELGNLIKRFRSGAESLPDAVVLTTEEGGIFWCNGLAQQILGLRWPEDNGQNILNLLR 148

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
               +               +   +         + L +R++           +   D++
Sbjct: 149 YPEFTQYL----------KTRDFSRPLNLVLNTGRHLEIRVMPYTHKQ---LLMVARDVT 195

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  Q +                + +F A VSHE+RTPLT + G+ E++  Q        +
Sbjct: 196 QMHQLEG--------------ARRNFFANVSHELRTPLTVLQGYLEMMDEQPLEGAVREK 241

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                + +      +  +V  LL +SKIE+   +L  E V +   +       Q  + +K
Sbjct: 242 A---LHTMREQTQRMEGLVKQLLTLSKIEAAPTHLLNEKVDVPMMLRVVEREAQTLSQKK 298

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           +        N + ++  +   ++    N++ NA++ TP G  I +      +      V 
Sbjct: 299 Q-TFTFEIDNGL-KVSGNEDQLRSAISNLVYNAVNHTPEGTHITVRWQRVPHG-AEFSVE 355

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G G+    +    + F ++  ++  +  G+GLGL + K  V+ +  +  I ST  KGT
Sbjct: 356 DNGPGIAPEHIPHLTERFYRVDKARSRQTGGSGLGLAIVKHAVNHHESRLNIESTVGKGT 415

Query: 803 LIEIIFP 809
               + P
Sbjct: 416 RFSFVIP 422


>gi|283781401|ref|YP_003372156.1| histidine kinase [Pirellula staleyi DSM 6068]
 gi|283439854|gb|ADB18296.1| histidine kinase [Pirellula staleyi DSM 6068]
          Length = 501

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 98/464 (21%), Positives = 198/464 (42%), Gaps = 41/464 (8%)

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
           LS LL A  +     ++     ++ +  I    R+       E++ A            P
Sbjct: 52  LSGLLLAIIVIQIANVRRSSQSKAAQRYIDLLCRIEPHLLADESTTAALPRLSSDNPWAP 111

Query: 426 ENMPQNGIEPEDVDTRINKRKME-----------IEVMQLCSILEATSDGIAIINREGII 474
                +    +        R +             +  QL  IL   SD +  I++ G I
Sbjct: 112 VFQRVHNCLADYARQLDEARHLSSIAEVRARHASRQFEQLTEILNGLSDPVVAIDQFGEI 171

Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
             +N++  +L   PVE             +    +   L E     +    +  T  S  
Sbjct: 172 TLSNQSAQRLLKLPVEADTHAALEQL---DLCEELVSLLGETRKRRVPAVRQAETELSDD 228

Query: 535 EEKLLSLRIIIKKLPFSS--------CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
           + +    RI  K L                 + DIS  K  + +               +
Sbjct: 229 QGRKHWFRITCKALAGDEQSSGNEQHGAVAVLTDISGQKAIQKRN--------------A 274

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
           +F++ VSHE++TPL++I  + E++ +       +    E+   I+   + +  ++++LL+
Sbjct: 275 EFVSAVSHEMKTPLSSIRAYVELLADDE--AEDDATREEFLKVIESQTDRLQRLIDNLLN 332

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706
           +++IE+G + +   P SL+E + EA++L+Q  A +K I + +  +     +LAD  ++ Q
Sbjct: 333 LARIEAGVVAVQKLPQSLNELLGEAVNLLQPAAQQKNITLSSELSPMYLGVLADRDTLLQ 392

Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
            A+N++SNA+ +T  GG + + +   +++ V+  V D+GVG++  + ++  + F ++   
Sbjct: 393 AAINLISNALKYTQPGGSVQVRSRLAASD-VVFEVTDSGVGLSEDDCKRVFEKFYRVKKD 451

Query: 767 QQIRGEGTGLGLPLAKAMVD-ANMGKFYIFSTPAKGTLIEIIFP 809
           +     GTGLGLPL K +V+  + G+  + S   +G+   ++ P
Sbjct: 452 R-EMASGTGLGLPLVKHIVEDIHNGRVEVESKLGEGSTFRLVLP 494


>gi|170736601|ref|YP_001777861.1| Hpt sensor hybrid histidine kinase [Burkholderia cenocepacia MC0-3]
 gi|169818789|gb|ACA93371.1| Hpt sensor hybrid histidine kinase [Burkholderia cenocepacia MC0-3]
          Length = 1002

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 113/667 (16%), Positives = 221/667 (33%), Gaps = 50/667 (7%)

Query: 184 VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL 243
           +    +  +  A   RL+ K S         + +         ++       +  +V + 
Sbjct: 99  LTDPALVAELDAGHGRLELKGSDRIPSMLVLADLSPATPASSYERDLAMASDLTYRVGAY 158

Query: 244 TEYYAHKDDVLKTEKYPLLTSE--ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301
              +  +  V      P         +                  Q    L+  +   F 
Sbjct: 159 LANHDAERAVAGYVYRPDRRFALVIPAPAAGSPTAGATGASALLAQVAAGLEPPAAGRFT 218

Query: 302 YLSHRNHPSLSA-------YFDEGENLTPETVDKCPIPFFVYSHGNLFYAN--------- 345
           +L+    P               G       V   P+          +  N         
Sbjct: 219 WLAPAYDPVQRRDVFRLVGAAYAGGQPFEVLVSTLPVDVLRTRLTTEYATNGAIIADAQG 278

Query: 346 ----PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401
                +   ++   ++  ++                  A     L +          +  
Sbjct: 279 NALLRTGAAVSDAATLATLKRVAAGPRAAAGSGPRSTYAGGLFALSQPIPDTDWTIVQAF 338

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV---DTRINKRKMEIEVMQLCSIL 458
           T++                       +    +  +           R++        +I+
Sbjct: 339 TLRSLVAAVGLQAGWYVAVMVAALVLVWALLVLFDRRVLIPDDARTRRVVESENLNRTIV 398

Query: 459 EATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
           EA   GIA+++  +G +L  N  +                       + +       +  
Sbjct: 399 EAAPSGIALLSLADGAVLLQNDTMRAY------------DARIAAAPSLAARLLARFDAS 446

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKK--LPFSSCYSLTMHDISEWKQEKNKLSHAK 575
                   +      T  ++ + L + + +     +        DI+  K  + KL  A 
Sbjct: 447 PGASAWQSDLHVTLPTGGDETVDLLVNLVRTRYRDADVVLCNFSDITSQKNIERKLDEAL 506

Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
           + A+  +  KS FLA +SHEIRTPL AI+G  E+I  +           E    ++ + +
Sbjct: 507 RAADAANDAKSAFLATMSHEIRTPLNAILGNLELIGREPLA----DTQRERLQTVEGASS 562

Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695
           ++L++++D+LD+SKIE+G+M +   P  L EA+ +  ++ +  A  K +       + + 
Sbjct: 563 VLLNLISDILDLSKIEAGQMTIEAIPFDLAEAIEQTGAMFEPLATAKGLQYDVIVDDALA 622

Query: 696 -RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTN 750
            R + D   ++QIA N++ NAI FT  G  + +      + +    V++ V DTG+GMT+
Sbjct: 623 SRYVGDPVRIRQIAANLVGNAIKFTDRG-DVTLEVYLRDDADPASPVVIGVSDTGIGMTD 681

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            +     +PF Q   S   R  GTGLGL L K +     G   + S P +G+   +  PL
Sbjct: 682 AQRAALFRPFTQADTSITRRYGGTGLGLALTKHLTQMMDGAIDVKSAPGEGSTFVVTLPL 741

Query: 811 YDTSHPH 817
              +   
Sbjct: 742 RAATDAE 748


>gi|320186029|gb|EFW60774.1| phosphate regulon sensor protein [Shigella flexneri CDC 796-83]
          Length = 431

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 72/427 (16%), Positives = 150/427 (35%), Gaps = 37/427 (8%)

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             +L       I     L  + W     L +         +        G+    +  + 
Sbjct: 33  WFLLASVTGLLIWHFWNLLRLSW----WLWVDRSMTPPPGRGSWEPLLYGLHQMQLRNKK 88

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            +R++   + +  S  E+  D + +   EG I   N    ++ G    +   +     + 
Sbjct: 89  RRRELGNLIKRFRSGAESLPDAVVLTTEEGGIFWCNGLAQQILGLRWPEDNGQNILNLMR 148

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
               +               +   +         + L +R++           +   D++
Sbjct: 149 YPEFTQYL----------KTRDFSRPLNLVLNTGRHLEIRVMPYTHKQ---LLMVARDVT 195

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  Q +                + +F A VSHE+RTPLT + G+ E++  Q        +
Sbjct: 196 QMHQLEG--------------ARRNFFANVSHELRTPLTVLQGYLEMMDEQPLEGAVREK 241

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                + +      +  +V  LL +SKIE+    L  E V +   +       Q  + +K
Sbjct: 242 A---LHTMREQTQRMEGLVKQLLTLSKIEAAPTQLLNEKVDVPMMLRVVEREAQTLSQKK 298

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           +        N + ++  +   ++    N++ NA++ TP G  I +      +      V 
Sbjct: 299 Q-TFTFEIDNGL-KVSGNEDQLRSAISNLVYNAVNHTPEGTHITVRWQRVPHG-AEFSVE 355

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G G+    + +  + F ++  ++  +  G+GLGL + K  V+ +  +  I ST  KGT
Sbjct: 356 DNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHAVNHHESRLNIESTVGKGT 415

Query: 803 LIEIIFP 809
               + P
Sbjct: 416 RFSFVIP 422


>gi|302038349|ref|YP_003798671.1| putative sensor histidine kinase [Candidatus Nitrospira defluvii]
 gi|300606413|emb|CBK42746.1| putative Sensor histidine kinase [Candidatus Nitrospira defluvii]
          Length = 915

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 117/774 (15%), Positives = 263/774 (33%), Gaps = 87/774 (11%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIG-MRLCDVSDILHIDP-NNHIGDLLKRQNTWYGK 146
           +++ G    I++     +G    +++G MR  D+     ++  +      ++R      +
Sbjct: 165 LNSQGMFVGINQTELDWLGYQKDEVVGIMRFQDLLTPESVELFHQQFPRFIERGVVRDLE 224

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK-------- 198
             +   +GT   +PI L+A  I   +  F   R   +           A  +        
Sbjct: 225 FEVRCKDGTL--LPILLSATAIKDPDGRFIASRSTLV--DITERRKADAALRQSHQTLEV 280

Query: 199 -------------------------------RLDKKFSHLHEIKKGHSS--VEKEKYDIF 225
                                            + +F  L E         +     D  
Sbjct: 281 LVKERTAALEDTNQRLEQELAQRNLIHQALIASESRFRELIESLPLPIWTCLPDGTCDYL 340

Query: 226 SQQSPPPHLRMKNKV--SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY 283
           S Q      R  ++   +   ++   +D    TE++    +    L  +  F   +    
Sbjct: 341 SPQWMNYTGRSADEPFSTGCLQHVHPEDRPRITEQWRDAVARTQPLDAELRFQRADGLYR 400

Query: 284 TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLF 342
               +   + +      +++             E +      V+         S  G + 
Sbjct: 401 WFHAHAAPILDRDGRVLKWVGTYTDTHDRKQGQEVQARLAAIVESSSDAVISKSLDGRIL 460

Query: 343 YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT 402
             N S  L+  Y   D I  +    +LL  P           ++    R     + R   
Sbjct: 461 TWNKSAELMFGYSGEDIIGQSI---SLLIPPDRQLEETSLIELIKTGTRVQQYETIR--- 514

Query: 403 IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
            +    +S+ ++       +        + I  +       ++++E  + Q   ++E + 
Sbjct: 515 -KRKDGSSIQVSLTVSPIVDANGLVNAVSTIARDIT----ARKQIEEMMTQQRRLIELSY 569

Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522
           + I     +  I+  NR   +L+GY   + L     + L+   P+ ++    E+      
Sbjct: 570 EPIFAWELDQGIVEWNRGCEQLYGYTRSEALGHSSNLLLQSRLPAPLSTIQAELERTGG- 628

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL--TMHDISEWKQEKNKLSHAKKIAEK 580
                     TK+ + + +      L  +    +  T  DI++ +Q +        +  K
Sbjct: 629 --WTGEIHHRTKDGRDVLVASRWGLLNTNGRSLVLETNRDITQLRQSE-------TMILK 679

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
           ++      L   SH+++ PL AI  FS V+  +R+    + +  ++   I R+   +  +
Sbjct: 680 KNKDLETLLYVTSHDLKEPLRAIESFS-VLIQERYANRLDEKGQDFLRRIVRATQRLDQL 738

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILAD 700
           + D+LD+S+  + +M+   + +  ++ + E +  ++    E    I       +PR+  +
Sbjct: 739 LTDILDLSR--AQRMDPPVDDIDAEQLMHEVLRRLERRIKETGARITIRSP--LPRLRVN 794

Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTT------HTSNEEVILRVRDTGVGMTNYELE 754
                Q   N+++NA+ F  +G    +            NE + L VRD G G+   + +
Sbjct: 795 TTWAIQGIYNLVANALKFASAGQAPDVEIAPHSGMDLEGNELIGLVVRDRGPGVAPEQRD 854

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           +  + F +         EGTG GL + + + + + G+ ++      G+   I F
Sbjct: 855 RIFELFRRA---VGREIEGTGAGLAIVRQVAERHGGRAWVEPREGGGSEFFITF 905



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/393 (10%), Positives = 95/393 (24%), Gaps = 17/393 (4%)

Query: 68  LDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH- 126
           + SE+ F        +   W     G    +S +     G  A +               
Sbjct: 311 IASESRFRELIESLPLP-IWTCLPDGTCDYLSPQWMNYTGRSADEPFSTGCLQHVHPEDR 369

Query: 127 IDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHV 186
                   D + R      +      +G  LY      A PI  R+      +  G    
Sbjct: 370 PRITEQWRDAVARTQPLDAELRFQRADG--LYRWFHAHAAPILDRDGRV--LKWVGTYTD 425

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY 246
                  + +  RL        +     S   +      S +    +        S++  
Sbjct: 426 THDRKQGQEVQARLAAIVESSSDAVISKSLDGRILTWNKSAELMFGYSGEDIIGQSISLL 485

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
                 + +T    L+ +       +      + +          + + +       +  
Sbjct: 486 IPPDRQLEETSLIELIKTGTRVQQYETIRKRKDGSSIQVSLTVSPIVDANGLVNAVSTIA 545

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGG 365
              +     +E        ++    P F +     +   N     L  Y   + +  +  
Sbjct: 546 RDITARKQIEEMMTQQRRLIELSYEPIFAWELDQGIVEWNRGCEQLYGYTRSEALGHS-- 603

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
            S LL   +L    +     L R+         R      +  + L  +       N   
Sbjct: 604 -SNLLLQSRLPAPLSTIQAELERTGGWTGEIHHR----TKDGRDVLVASRWGLLNTNGRS 658

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458
                     +    R ++  +  +   L ++L
Sbjct: 659 ---LVLETNRDITQLRQSETMILKKNKDLETLL 688



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 24/302 (7%), Positives = 63/302 (20%), Gaps = 52/302 (17%)

Query: 312 SAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
                +      +  D  P  +  + S G     N + L    Y+  + + I      LL
Sbjct: 141 EGLLLKNAQDVQDLYDHAPCGYHSLNSQGMFVGINQTELDWLGYQKDEVVGIMRFQD-LL 199

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
               +   +   P  + R     +        ++      L +        +     +  
Sbjct: 200 TPESVELFHQQFPRFIERGVVRDLEFE-----VRCKDGTLLPILLSATAIKDPDGRFIAS 254

Query: 431 NGIEPEDVDTRINKRKME---------------------------------------IEV 451
                +  + R     +                                           
Sbjct: 255 RSTLVDITERRKADAALRQSHQTLEVLVKERTAALEDTNQRLEQELAQRNLIHQALIASE 314

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
            +   ++E+    I     +G     +       G   ++         +       +  
Sbjct: 315 SRFRELIESLPLPIWTCLPDGTCDYLSPQWMNYTGRSADEPFSTGCLQHVHPEDRPRITE 374

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQE 567
              + ++    Q L+        +            +         +  T  D  + KQ 
Sbjct: 375 QWRDAVA--RTQPLDAELRFQRADGLYRWFHAHAAPILDRDGRVLKWVGTYTDTHDRKQG 432

Query: 568 KN 569
           + 
Sbjct: 433 QE 434



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/187 (11%), Positives = 62/187 (33%), Gaps = 7/187 (3%)

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
                +  +  +        +    ++ E    ++ +  +      +  + +    G   
Sbjct: 105 GMFAVIAHLIVQYRGATERLIQTAALDAEHKALQLKEGLLLKNAQDVQDLYDHAPCGYHS 164

Query: 468 INREGIILSTNRAVSKLFGYPVEDILR-KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
           +N +G+ +  N+      GY  ++++    F   L   +  + +      +   + + LE
Sbjct: 165 LNSQGMFVGINQTELDWLGYQKDEVVGIMRFQDLLTPESVELFHQQFPRFIERGVVRDLE 224

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKES 582
                  K+  LL + +    +       +    T+ DI+E ++    L  + +  E   
Sbjct: 225 FEV--RCKDGTLLPILLSATAIKDPDGRFIASRSTLVDITERRKADAALRQSHQTLEVLV 282

Query: 583 SHKSDFL 589
             ++  L
Sbjct: 283 KERTAAL 289



 Score = 43.1 bits (100), Expect = 0.22,   Method: Composition-based stats.
 Identities = 47/352 (13%), Positives = 89/352 (25%), Gaps = 20/352 (5%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144
           F W +D    + E +    +  G    + +G     +       P + I   L+R   W 
Sbjct: 573 FAWELDQG--IVEWNRGCEQLYGYTRSEALGHSSNLLLQSRLPAPLSTIQAELERTGGWT 630

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
           G+      +G ++ V      L    R+          ++  NR     R     + KK 
Sbjct: 631 GEIHHRTKDGRDVLVASRWGLLNTNGRS---------LVLETNRDITQLRQSETMILKKN 681

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
             L  +    S   KE        S     R  N++    + +  +          LLT 
Sbjct: 682 KDLETLLYVTSHDLKEPLRAIESFSVLIQERYANRLDEKGQDFLRRIVRATQRLDQLLTD 741

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
                   +      ++          L +      E         ++            
Sbjct: 742 I------LDLSRAQRMDPPVDDIDAEQLMHEVLRRLERRIKETGARITIRSPLPRLRVNT 795

Query: 325 TVDKCPIPFFVYSHGNLFYANPS-FLLLTKYKSVDDIE-IAGGLSTLLDAPKLSDNNAIK 382
           T     I   V +      A  +  + +  +  +D       GL      P ++     +
Sbjct: 796 TWAIQGIYNLVANALKFASAGQAPDVEIAPHSGMDLEGNELIGLVVRDRGPGVAPEQRDR 855

Query: 383 PVML-YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
              L  R+    I  +     I                +     E     G+
Sbjct: 856 IFELFRRAVGREIEGTGAGLAIVRQVAERHGGRAWVEPREGGGSEFFITFGV 907


>gi|238483287|ref|XP_002372882.1| sensor histidine kinase/response regulator, putative [Aspergillus
            flavus NRRL3357]
 gi|220700932|gb|EED57270.1| sensor histidine kinase/response regulator, putative [Aspergillus
            flavus NRRL3357]
          Length = 1943

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 105/671 (15%), Positives = 212/671 (31%), Gaps = 90/671 (13%)

Query: 217  VEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS-------L 269
             E   +                ++  L +   H  + L   +    TS  +S       L
Sbjct: 804  GESPGFPTKLGADAVDSYFNVQQLKGLRDALTHHRNRLSKPRQNATTSTPTSPGRLLGKL 863

Query: 270  PEQEDF---HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
            P  ED          Q +  Q F      S           +   +    E      +TV
Sbjct: 864  PTDEDGTTAQDPTAAQASPSQEFRAPPVISPTQSSSRHPSANSFYAQLPRELPRPFTDTV 923

Query: 327  DKC-----PIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
             +      P+  F+     G + + N  F    + +  +        +           +
Sbjct: 924  AQLMLNSVPLHIFLAKPQSGEVIWTNSKFDAYRRSQPQEQKLRDPWQN----IHSSEREH 979

Query: 380  AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
              +         +      R+     +        F      +   E +   G   +  +
Sbjct: 980  VSQEWANALRTGSQFTERVRVKRF-NDESAYRWFIFRANPLLSSTGEVLYWIGSFLDIHE 1038

Query: 440  TRINKRKMEIEVMQL------CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
              I + K   E  +        +   +    +        ++  N       G  +E+ L
Sbjct: 1039 QHIAELKAAQEREKFAIDAKYRAFSNSIPQIVFEATEFRGLIFVNEQWHLYTGQKLEEAL 1098

Query: 494  RKPFTVFLEQNTPSV--------------------------------MNHYLTEILSLDL 521
               F   L  +                                    +   L E++   +
Sbjct: 1099 NFGFAKHLHPDDLEKCGVLSVYLSESQKENTVSGLDTTLQERHLANGVTPALEELVRRGV 1158

Query: 522  RQT---------LEKITLGSTKEEKLLSLRIIIKKLP------FSSCYSLTMHDISEWKQ 566
                                +K        + + ++         + +  T  DI++ K 
Sbjct: 1159 ASVQKDENGRVFYSTEIRLRSKGADFRWHLVRLVRVETSSFGSGEASWYGTCTDINDRKN 1218

Query: 567  EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
             + +L+ A +    +   K+ F + +SHEIRTPL  I+G    I +              
Sbjct: 1219 LERELNKAMQQLNNQMESKTKFFSNMSHEIRTPLNGILGTIPFILDTHLDT----DQRRM 1274

Query: 627  ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
             + I  S   + ++V+++LD+S++E+GKM+L      +   + + I  V   A +K + I
Sbjct: 1275 LDTIQNSSTNLRELVDNILDVSRVEAGKMSLVNSWFHVRSVIEDVIDTVSSRAIDKGLEI 1334

Query: 687  RTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE--------- 736
                  ++P  ++ D   ++Q+ +N++ NA+ FT  G +I I  +               
Sbjct: 1335 NYLMDVDVPPMVIGDRFRIRQVLINLVGNAVKFTSQG-EIHIRCSINHGTATLSKETELL 1393

Query: 737  VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
            +   V DTG G +  + E+ M+ F Q+  +   +  G+GLGL L+K +V+ + G+    S
Sbjct: 1394 LNFDVVDTGKGFSARDAERLMQRFSQLGQNGSQQHAGSGLGLFLSKQLVEMHGGRLTPSS 1453

Query: 797  TPAKGTLIEII 807
               +G      
Sbjct: 1454 KEGQGAKFSFY 1464


>gi|119488887|ref|ZP_01621849.1| hybrid sensory kinase [Lyngbya sp. PCC 8106]
 gi|119455048|gb|EAW36190.1| hybrid sensory kinase [Lyngbya sp. PCC 8106]
          Length = 1261

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 113/688 (16%), Positives = 230/688 (33%), Gaps = 72/688 (10%)

Query: 185  HVNRVDNDPRALGKRLDKKFSHLHE-IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL 243
                +     A  + L +        I    + +  +     +           ++V   
Sbjct: 326  QEIEIRTTSEAYLRLLQRAVDASSNGIVIADAQLTDKPLTYVNSGFERTTGYSADEVIGE 385

Query: 244  TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFH--TINLNQYTKKQYFGTLQNNSKESFE 301
               +   +D+ +     +  S       +        +   +  K     + +       
Sbjct: 386  NCRFLQGEDIDQPNLIEMRNSIAEGRETKIIVRNYRKDGTPFWNKLSISPVHDEEGNLTH 445

Query: 302  YLSHRNHPS-----------LSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFL 349
            ++  +   S                   E L  ET     +  + +    + ++ +    
Sbjct: 446  FIGIQEDISDRIFAEVAQKQAEEELRRSETLLKETQRIAKVGGWSWDLIDHKYWWSEQMY 505

Query: 350  LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
             LT     D I     +   +     S         L +   + I               
Sbjct: 506  QLTGIHPDDPISSLEQIEQRIHPEDRSRVRQATFETLRQGITSTIEFRTLDQ-----DNT 560

Query: 410  SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ---------------- 453
               +      + +   + +   G   +  D +  +  + +   +                
Sbjct: 561  IHHLISRTQVQQDDQGQIIRLYGTLQDISDYKQREEALRLFSEEIACKTGEEFFHTCVQY 620

Query: 454  LCSILEATSDGIA--IINRE----GIILSTN-RAVSKLFGYPVEDILRKPFTVFLEQNTP 506
            L  +L+     +   + +        +   +  ++ +   Y       +          P
Sbjct: 621  LAQVLQ-VKYAVIAEVTDETKQKLRTLAFWDGDSLRENLEYDASGTPCELVINQAWCYHP 679

Query: 507  SVMNHYLTE---ILSLDLRQTLEKITLGSTKE--EKLLSLRIIIKKLPFSSCYSL-TMHD 560
            + + HY  +   +  L +          ST E    +  + +   ++       +     
Sbjct: 680  ANLQHYFPDNILLAKLGVESYWGIPLANSTGESIGLIYIMDVAPLEINLDHEMIMKIFAT 739

Query: 561  ISE----WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
             +E     +  +  L  AK+ AE  +  KS FLA +SHE+RTPL AI+GFS+++    + 
Sbjct: 740  RTEAELERQHFEITLRQAKEAAEAANRSKSTFLANMSHELRTPLNAILGFSQLLSRSIYL 799

Query: 617  PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
                    +    I  SG  +L ++N +LD+SKIE+G+M +      L   +     +  
Sbjct: 800  SGDE---KDSLEVIHSSGQHLLTLINQVLDLSKIEAGRMKMQLRKFDLFHLLQSLERMFT 856

Query: 677  LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII--------- 726
              AN+K + ++     +IP+ I  D   ++QI +N+LSNAI FTP G  I+         
Sbjct: 857  QKANDKNLELKFDCHPDIPQLIYTDETKLRQILINLLSNAIKFTPRGEIILRVYPRWSNL 916

Query: 727  --ISTTHTSNEE--VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
              IS++        +   V+DTGVG+   E +   + F Q   S Q   EGTGLGL +++
Sbjct: 917  EAISSSRLPAGTYALSFEVKDTGVGIAPDECKYLFQAFVQT-LSGQQAQEGTGLGLKISQ 975

Query: 783  AMVDANMGKFYIFSTPAKGTLIEIIFPL 810
              +    G+  + S   +GT  + + P+
Sbjct: 976  QFIHLIGGEISVESDLGRGTTFQFMIPV 1003



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/245 (12%), Positives = 65/245 (26%), Gaps = 16/245 (6%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI--GDLLKRQNTWYGKTTLWPI 152
           L  ++    +T G  A ++IG   C       ID  N I   + +            +  
Sbjct: 364 LTYVNSGFERTTGYSADEVIGEN-CRFLQGEDIDQPNLIEMRNSIAEGRETKIIVRNYRK 422

Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGF-----GIVHVNRVDNDPRALGKRLDKKFSHL 207
           +GT       L+  P++      + F G        +             +R +      
Sbjct: 423 DGTPF--WNKLSISPVHDEEGNLTHFIGIQEDISDRIFAEVAQKQAEEELRRSETLLKET 480

Query: 208 HEIKKGHSSVEKEKYDIFSQQS---PPPHLRMKNKVSSLTEYYAH-KDDVLKTEKYPLLT 263
             I K            +           +   + +SSL +       +     +     
Sbjct: 481 QRIAKVGGWSWDLIDHKYWWSEQMYQLTGIHPDDPISSLEQIEQRIHPEDRSRVRQATFE 540

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGT--LQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
           +    +    +F T++ +         T   Q++  +           S     +E   L
Sbjct: 541 TLRQGITSTIEFRTLDQDNTIHHLISRTQVQQDDQGQIIRLYGTLQDISDYKQREEALRL 600

Query: 322 TPETV 326
             E +
Sbjct: 601 FSEEI 605


>gi|107026341|ref|YP_623852.1| multi-sensor hybrid histidine kinase [Burkholderia cenocepacia AU
           1054]
 gi|116692471|ref|YP_838004.1| multi-sensor hybrid histidine kinase [Burkholderia cenocepacia
           HI2424]
 gi|105895715|gb|ABF78879.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia cenocepacia AU
           1054]
 gi|116650471|gb|ABK11111.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia cenocepacia
           HI2424]
          Length = 666

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 92/378 (24%), Positives = 153/378 (40%), Gaps = 20/378 (5%)

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
           L  +++A+ D I   +    I S N A + +FG        +     +         H +
Sbjct: 143 LRRVVDASPDAIVGTDAARRITSWNPAAASIFGIDTAQANGRDIVTMIAPRWLR--RHAV 200

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKN 569
               +           L    +            +     +      T+ +  E ++ + 
Sbjct: 201 PASFADLRAPVGPLDVLCVRPDGGRFRATFAASPIIDGQGHCAGLSLTLREAGERRRNER 260

Query: 570 KL-------SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
                      A+  A+  +  K + LA VSHE+RTPL  I G+ EV++N      G   
Sbjct: 261 HHLRSLRGARDARVQADASNRLKDELLATVSHELRTPLNVIYGWVEVLRN----ADGQGF 316

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             +  + IDRS   +  +V DLLD S + +G++ L   PV L   V +A   +   A   
Sbjct: 317 AQQAVDAIDRSARSLSHMVADLLDASSLATGRLRLERVPVDLVRIVRDAARELDATAQAN 376

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
            +++ T +A     I AD   ++Q+  N+LSNAI FTP GG+I +S T  + E V L V 
Sbjct: 377 GLVLSTEYAMPACVIPADGERLRQLLSNLLSNAIKFTPPGGRINVSLT-RAGERVRLSVS 435

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKG 801
           DTG G+    L      F +   +      G GLGL + + +   + G+    S    +G
Sbjct: 436 DTGQGIAPEYLPHLFDTFSRPEGAFTSPKRGLGLGLSIVRNIAQLHGGEVIATSAGAGRG 495

Query: 802 TLIEIIFPL-YDTSHPHD 818
             + +  P  +D   P +
Sbjct: 496 MTVTVTLPAGWDADDPTE 513



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 44/540 (8%), Positives = 106/540 (19%), Gaps = 42/540 (7%)

Query: 37  EKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLK 96
           +     +   D  +  +         S+   L  +                  DA   + 
Sbjct: 106 KPLLANDRLRDIGDDDSDPYPPHREPSSVASLSDDGLLRRVVDASPDAIV-GTDAARRIT 164

Query: 97  EISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTN 156
             +       G    +  G  +  +     +  +         +           +    
Sbjct: 165 SWNPAAASIFGIDTAQANGRDIVTMIAPRWLRRHAVPASFADLRAPVGPLDV-LCVRPDG 223

Query: 157 LYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSS 216
                  AA PI       +G      +              R  +            + 
Sbjct: 224 GRFRATFAASPIIDGQGHCAGLS--LTLREAGERRRNERHHLRSLRGARDARVQADASNR 281

Query: 217 VEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFH 276
           ++ E     S +   P   +   V  L             +              +   H
Sbjct: 282 LKDELLATVSHELRTPLNVIYGWVEVLRNADGQGFAQQAVDAIDRSA--------RSLSH 333

Query: 277 TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY 336
            +           G L+            R+         +   L   T    P      
Sbjct: 334 MVADLLDASSLATGRLRLERVPVDLVRIVRDAARELDATAQANGLVLSTEYAMPACVIPA 393

Query: 337 SHGNLFY------------------ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
               L                     N S     +   +   +   G++           
Sbjct: 394 DGERLRQLLSNLLSNAIKFTPPGGRINVSLTRAGERVRLSVSDTGQGIAPEYLPHLFDTF 453

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
           +  +           +  S   +  Q +    +A +             +P      +  
Sbjct: 454 SRPEGAFTSPKRGLGLGLSIVRNIAQLHGGEVIATSAGAGRGMTVTVT-LPAGWDADDPT 512

Query: 439 DTRINKRKMEIEVMQLCSILEATSDG--IAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
           +     +     V           DG  + +++ +    ++  A  +  G  V       
Sbjct: 513 EQPSRTKGASDTVAL---------DGQRVLVVDDDATSRTSLAAALETMGAQVSTARSGH 563

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556
             +   +  P  +      +   D    L++I         L  + +            +
Sbjct: 564 DALEAVERQPPSVVLSDLAMPDGDGYWLLDRIRRLPNGGGHLPVVAVTAHAGKADRRRVM 623


>gi|228973644|ref|ZP_04134226.1| hypothetical protein bthur0003_34000 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228980200|ref|ZP_04140514.1| hypothetical protein bthur0002_33710 [Bacillus thuringiensis Bt407]
 gi|228779558|gb|EEM27811.1| hypothetical protein bthur0002_33710 [Bacillus thuringiensis Bt407]
 gi|228786105|gb|EEM34102.1| hypothetical protein bthur0003_34000 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
          Length = 478

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 95/503 (18%), Positives = 194/503 (38%), Gaps = 39/503 (7%)

Query: 321 LTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
           +     +  P     +   G + + NPS   +  Y S++ +E     S L       + +
Sbjct: 1   MYASLFEHNPDSIISLNLEGVILHINPSAERILGYTSLE-LEQKNITSIL-------EAH 52

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
             + V+    +         + +I       L +         Q         ++P +  
Sbjct: 53  ISEQVLQNIKNTEADNQQEYILSIYHKNGFLLDVVTKLVPIFVQNRLTGVYAIMKPLEKS 112

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
            RI +  ++    +L +++ +    +   + EG  L  N      F +       K  + 
Sbjct: 113 ERI-ENMLKESEKRLRTLVNSMPAFVIFKDHEGRWLEANDYALSCFNFHHVPYHGKKDSE 171

Query: 500 FLEQNTPSVMN----HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-- 553
            ++ N            + E+     RQ L        +++  L L I    L       
Sbjct: 172 LIQYNEAYREAFLHCEEIDELAWQ-QRQILHGEEFIIHRDDFDLILSISKVPLYHPDGSR 230

Query: 554 --YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
               +   D++E K+ +  L  ++K+A           A ++HEIR PLT++ GF  ++ 
Sbjct: 231 KGLIVMGRDVTELKETEKLLRKSEKLAVV-----GQLTAGIAHEIRNPLTSLKGFLTLLL 285

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
                P  +     Y + +    + +  I +  + +SK +     L  +  ++   + E 
Sbjct: 286 -----PEISEEQKWYIDVMLSEISQMESITSQFMAMSKPQ----VLSIQTCNIQTLIEEV 336

Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
           ++ +   A    + I     + +  I  D   +KQ+ +NIL NAI   P+GG I I T  
Sbjct: 337 VTFILPTAIMHSVHIIMDHFDYVYDIQCDGNQLKQVFINILKNAIEAMPNGGNIFIQTKP 396

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
             +  +++R+ D G G+    + +  +PF        ++ +GTGLGL +   +++ + G+
Sbjct: 397 LEDNFILIRIMDEGCGIPEDRISRLGEPFY------SLKEKGTGLGLMMCYKIIEEHHGR 450

Query: 792 FYIFSTPAKGTLIEIIFPLYDTS 814
            +I S   KGT+++I  PL  + 
Sbjct: 451 LHISSELNKGTIVDIELPLSSSH 473


>gi|312958187|ref|ZP_07772710.1| alginate biosynthesis sensor protein [Pseudomonas fluorescens WH6]
 gi|311287618|gb|EFQ66176.1| alginate biosynthesis sensor protein [Pseudomonas fluorescens WH6]
          Length = 595

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 96/488 (19%), Positives = 191/488 (39%), Gaps = 29/488 (5%)

Query: 327 DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
           D+    F V  +G +     +   +         + A  ++ L+    L+          
Sbjct: 133 DRLTESFNVLRNGLIDEHKRALETI-NLSERKSHDRALLIAGLMGLVGLAVLIIGFVTAH 191

Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK-- 444
             + R      A         +    +T  P   A +  +   + GI  E +        
Sbjct: 192 GIARRFGGPIEALAKAADRIGQGDFEVTL-PISSAAEMNQLTRRFGIMAEALRQHQATNI 250

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            ++     +L ++L++  DG+ +I+R+G +   N    +  G+  E + +      +   
Sbjct: 251 DELLAGQQRLQAVLDSIDDGLLMIDRQGRLEHLNPVAQRQLGWDEERLGQGLGEALVRPE 310

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDIS 562
               +   L           LE        E +LL+  +              + +HD++
Sbjct: 311 LDEQLQLVLRGGNLERAPDDLEVEV---EGELRLLTYSLTPVSHTQGHILGAVMVLHDVT 367

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E +  +                +S+F+ R SHE+RTP+T  +  +  +  +R       R
Sbjct: 368 EQRAFE--------------RVRSEFVLRASHELRTPVTG-MHMAFGLFRERAKFPAESR 412

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             +  + ++     ++ ++NDLL+ S+ +SG   L   P  + + +  A +     A  +
Sbjct: 413 EADLLDTVNEEMQRLMQLINDLLNFSRYQSGLQKLTLGPCDVPDLLEHAQARFVEPAKAQ 472

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
            I +     +++PR+ AD   ++++  N+L NA+  T  GGQI +       E VI+ V 
Sbjct: 473 NIELLVEAQDDLPRLYADQAQLERVLDNLLGNALRHTADGGQIRLQ-ARRHGERVIISVE 531

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G G+   +  +  +PF Q+      +  G GLGL L K +V  + G+  ++S P +GT
Sbjct: 532 DNGEGIAYGQQGRIFEPFVQV----GRKKGGAGLGLALCKEIVQLHGGRMGVYSRPGQGT 587

Query: 803 LIEIIFPL 810
              +  PL
Sbjct: 588 QFYMALPL 595



 Score = 47.7 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 29/242 (11%), Positives = 71/242 (29%), Gaps = 15/242 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G L+ ++    + +G    + +G  L +      +D       L+ R         
Sbjct: 274 IDRQGRLEHLNPVAQRQLGWD-EERLGQGLGEALVRPELDEQ---LQLVLRGGNLERAPD 329

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
              +E       +  +  P+        G     ++H          +  R +      H
Sbjct: 330 DLEVEVEGELRLLTYSLTPVSHTQGHILGA--VMVLHDVTEQRAFERV--RSEFVLRASH 385

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           E+ +   +     + +F +++  P    +++ + L +    +   L      LL      
Sbjct: 386 EL-RTPVTGMHMAFGLFRERAKFP---AESREADLLDTVNEEMQRLMQLINDLLNFSRYQ 441

Query: 269 LPEQ-EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
              Q       ++    +      ++    ++ E L          Y D+ +      +D
Sbjct: 442 SGLQKLTLGPCDVPDLLEHAQARFVEPAKAQNIELLVEAQDDLPRLYADQAQ--LERVLD 499

Query: 328 KC 329
             
Sbjct: 500 NL 501


>gi|307129983|ref|YP_003881999.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Dickeya dadantii 3937]
 gi|306527512|gb|ADM97442.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Dickeya dadantii 3937]
          Length = 951

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 94/382 (24%), Positives = 159/382 (41%), Gaps = 28/382 (7%)

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKP 496
           +    N  ++E        I+ +   GI I+   +G  + +N            +   + 
Sbjct: 341 LPAERNALQLEENEQFNRKIVASAPVGICILRISDGTNIISNELAHNYLSLLTYEDRVRI 400

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556
               +     S     +                   T     L +  +  +    +    
Sbjct: 401 VR--IICEQQSKSLDVV-------------------TGRNHHLQISFVHSRYRNENVAIC 439

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            + D+S   + +  L      AE+ S  KS FLA VSHE+RTPL  IIG  ++++ +   
Sbjct: 440 VLLDVSARVRMEESLQEMANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKSLP 499

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
              N         +  S  L+L I++D+LD SKIES ++ +     +  E ++  +S   
Sbjct: 500 SDAN----RLVTAMQNSSALLLKIISDILDFSKIESEQLKIEPGEFAPREVINHIVSNYL 555

Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
               +KR+++      N+P R+L D   ++Q+  N+LSNAI FT +G  I+       + 
Sbjct: 556 PLVVKKRLVLYCYIDPNVPFRLLGDAVRLQQVLSNLLSNAIKFTDTG-CIVFQVACCDDG 614

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            ++ ++RDTGVG+    + K   PF Q     Q   +GTGLGL + + +V    G   I 
Sbjct: 615 YLVFKMRDTGVGIDTRAVMKLFDPFFQAGTGVQRHFQGTGLGLAICEKLVSLMDGDITIE 674

Query: 796 STPAKGTLIEIIFPLYDTSHPH 817
           S P  G+   I  PLY   +P 
Sbjct: 675 SEPGLGSEFGIRIPLYRAHYPQ 696


>gi|23016213|ref|ZP_00055971.1| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 788

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 93/292 (31%), Positives = 151/292 (51%), Gaps = 15/292 (5%)

Query: 535 EEKLLSLRIIIKKLPFS-SCYSLTM----HDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
           + K++ +    K +    +     M     DI+  K  ++ +  AK+IAE+ +  KSDFL
Sbjct: 2   DGKIVWVHAAGKLVRDEANGAIRFMYGAYQDITAVKAAEDAIRAAKEIAEEATKAKSDFL 61

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
           A +SHEIRTP+ AIIG S +    +     + +   Y   + RSG  +L I+ND+LD SK
Sbjct: 62  ANMSHEIRTPMNAIIGMSHLALQTKL----DKKQRNYIEKVHRSGENLLGIINDILDFSK 117

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIA 708
           IE+GKM +      L++ +    +LV L A ++ + +  + A +IP  ++ D   + QI 
Sbjct: 118 IEAGKMTMESIDFRLEDVMDNLANLVGLKAEDRGLELLFNVAPDIPSALIGDPLRLGQIL 177

Query: 709 LNILSNAIHFTPSGGQIIISTTH----TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764
           +N+ +NA+ FT  G +II+            E+   VRD+G+GMT  +  K  K F Q  
Sbjct: 178 INLGNNAVKFTEKG-EIIVGAELVERSEDQAELHFWVRDSGIGMTPEQCGKMFKSFSQAD 236

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
            S   +  GTGLGL ++K +V+   G+ ++ S   KG+       +   SHP
Sbjct: 237 TSTTRKYGGTGLGLAISKTLVELMDGRIWVESEAGKGSTFHFHVRVGVQSHP 288


>gi|312602473|ref|YP_004022318.1| sensory transduction protein kinase [Burkholderia rhizoxinica HKI
           454]
 gi|312169787|emb|CBW76799.1| Sensory transduction protein kinase (EC 2.7.3.-) [Burkholderia
           rhizoxinica HKI 454]
          Length = 685

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 88/392 (22%), Positives = 164/392 (41%), Gaps = 21/392 (5%)

Query: 432 GIEPEDVDTRINKRKM-EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490
            +  +     I + ++     +   ++ EA    +     +G I   ++ +    G    
Sbjct: 143 VLAQKRAQREIAEAELVRARELHYRTLAEAIPQLVWTALPDGRIDFASKQLLSYTGMDAP 202

Query: 491 DILRKPF-TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
            +L   +    +            ++ L        +        +      +     L 
Sbjct: 203 SLLGHVWPDALVHPEDLERTVQRWSDALRD--SSDYDVEHRLRAADGAWRWFKTRAAPLL 260

Query: 550 FSSC----YSLTMHDISEWKQEKNKLSH-------AKKIAEKESSHKSDFLARVSHEIRT 598
             +     +  T  DI + K    +  H       A+  AE+ S  K +F+A +SHE+RT
Sbjct: 261 DGAGRVSKWFGTSTDIDDQKLAAQEREHLLANERQARSEAERASRLKDEFVATLSHELRT 320

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
           PL AI+G+++++      P    R  +    I R+  L   +++DLLD+S+I +GK+ L+
Sbjct: 321 PLNAIVGWAQLLLRDASDP---ARVEKGLQVIHRNARLQSQMIDDLLDMSRIMAGKVRLN 377

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718
            + V L + +++ I+ VQL A+ K + +          +  D   ++QI  N+L+NAI F
Sbjct: 378 VQRVELVDVITDVIATVQLAADAKELRVMPVL-GAPAVVNGDPARLQQIIWNLLTNAIKF 436

Query: 719 TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
           TP  G++ ++ T + + E  L V DTG G+    L    + F Q   S   +  G GLGL
Sbjct: 437 TPRRGRVAVTLT-SGDGEARLVVSDTGCGIREAFLPHVFERFRQEDASTTRQFGGLGLGL 495

Query: 779 PLAKAMVDANMGKFYIFS-TPAKGTLIEIIFP 809
            + K +V+ + G     S    +G    +  P
Sbjct: 496 SIVKELVEMHGGHITAASDGEQRGATFTVTLP 527



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/233 (10%), Positives = 57/233 (24%), Gaps = 5/233 (2%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCD-VSDILHIDPNNHIGDLLKRQNTW 143
             W     G +   S++L    G  A  ++G    D +     ++          R ++ 
Sbjct: 176 LVWTALPDGRIDFASKQLLSYTGMDAPSLLGHVWPDALVHPEDLERTVQRWSDALRDSSD 235

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
           Y             +      A P+       S  + FG               + L   
Sbjct: 236 YDVEHRLRAA-DGAWRWFKTRAAPLLDGAGRVS--KWFGTSTDIDDQKLAAQEREHLLAN 292

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
                   +  S ++ E     S +   P   +    + L    A     ++     +  
Sbjct: 293 ERQARSEAERASRLKDEFVATLSHELRTPLNAIV-GWAQLLLRDASDPARVEKGLQVIHR 351

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
           +        +D   ++     K +             + ++     + +    
Sbjct: 352 NARLQSQMIDDLLDMSRIMAGKVRLNVQRVELVDVITDVIATVQLAADAKELR 404


>gi|163756235|ref|ZP_02163350.1| sensory box histidine kinase/response regulator [Kordia algicida
           OT-1]
 gi|161323847|gb|EDP95181.1| sensory box histidine kinase/response regulator [Kordia algicida
           OT-1]
          Length = 782

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 98/377 (25%), Positives = 166/377 (44%), Gaps = 7/377 (1%)

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
           E       ++++E       +++  + D   I N +GII+ +N+   +        I   
Sbjct: 262 EIFQKSQIQKELENNEKLYAAVIHNSLDANIIFNVDGIIIRSNKKAVEFINAHENQINFY 321

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555
                        +    +   S  L Q   +  +    E    +L++    +     + 
Sbjct: 322 KLLPKEFSEKLKTIIDAFSRNTSSGLAQDFFEFEVYKNGETIYYNLKVNPIYINNKMLFF 381

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
             + DIS+  +   ++  A+ IAEK +  K+ FL+ +SHEIRTPL  I+G SE     R 
Sbjct: 382 CVIRDISKDIRNMIRIEEARVIAEKSAKAKTTFLSNMSHEIRTPLNVILGLSE--LFNRK 439

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
              G  +  E    I  S   +L IVND+LD SKIE+GK+N+     +  E +S      
Sbjct: 440 DFTGTEKEYENIEAIRFSTENLLMIVNDILDFSKIEAGKLNVQKVDFNFTELISNLNKGF 499

Query: 676 QLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTS 733
           +L A EK +    +  N+IP+ I+ D   + QI  N++ NAI FT  G   + I+     
Sbjct: 500 RLKAEEKGLDFSINITNSIPKYIVGDQYRLSQILNNLIGNAIKFTKKGFINVNITAKVLE 559

Query: 734 NE--EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
           ++  ++   + D+G G+    L    + F Q  +S+Q + +GTGLGL + K +V    G 
Sbjct: 560 DKTLQLYFTIEDSGYGIPKENLNSIFESFYQTYHSEQ-KPKGTGLGLSITKELVSLLGGN 618

Query: 792 FYIFSTPAKGTLIEIIF 808
             + S    GT  +   
Sbjct: 619 LTVKSEVNVGTTFDFDL 635


>gi|114567432|ref|YP_754586.1| signal transduction histidine kinase-like protein [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
 gi|114338367|gb|ABI69215.1| PAS/PAC sensor signal transduction histidine kinase [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
          Length = 878

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 101/729 (13%), Positives = 238/729 (32%), Gaps = 57/729 (7%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEG 154
            + +S    + +G    ++IG    +       D       L +     +G+      + 
Sbjct: 179 YRYLSPSHHRMLGYSPEELIGKNCFEHMHPD--DRARVTKKLEEGSRAGHGRAQYRSAKK 236

Query: 155 TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214
              Y+ ++     I++ + E        +              K  ++ + ++ +     
Sbjct: 237 DGSYIWLEAIGRIIWNEHGEEE---ILLVTRDISERKKAEEALKASEESYRYIVDSAADG 293

Query: 215 SSVEK----EKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270
            +V            S          K           H +D  +  K            
Sbjct: 294 ITVVDCNSYGPKYTNSALERMLGFSSKEYSQVNLFDRVHPEDHERVFKAVKEGERTGYNS 353

Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330
            +  +   + N          L  + +   E+L      S     +E    + E      
Sbjct: 354 AEFRYRKKDGNYIWLDTNGKMLYRDGQA--EWLCISRDISSKKQAEEELRYSEERYRIIA 411

Query: 331 IPFFVY------SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
              F+             Y N +   +    + D      G              A    
Sbjct: 412 DSSFLMISTFCPDKMQYIYWNSTVYKMLGLTAED----ISGRDLFYWVHPEDHARACSAF 467

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
                +             +    + + +        N   + +       +  + R  +
Sbjct: 468 QELLENGEGSC----ECRHRRKDGSYVWIEVQGKLIRNPAGK-LEVLFFSRDVSELREAR 522

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            K++ ++ +   ++   ++   I   +  +   NR   +  GY  E+++ K    F+   
Sbjct: 523 DKLQCQLEEQQELINNLNELFYIYGPDFRLRFVNRKTIECLGYSREEMIGKSIFDFVPAE 582

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDI 561
              ++   + E       +T E   L    + + + LR+    +          +   DI
Sbjct: 583 DLELVKARVLEREHCGEVKTYEHQALCQ--DGRKVLLRVKGSLIMKGGNLEGVQILAEDI 640

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           +E ++ + ++     +   +     +  A + HE+R P+T + GF +++           
Sbjct: 641 TEQRRMEKEM-----LRLAQLQTVGEMAAGIGHEVRNPMTTVRGFLQLMSQNTELT---- 691

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA-- 679
           +Y  Y + +    +    I+++ L ++K       ++   ++L++ +++   L+   A  
Sbjct: 692 KYQAYFDTMLEELDRANSIISEFLSLAK----NKMVNLHNLNLNDIITQLYPLLLADAMV 747

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
           ++K IL+       IP +L D + ++Q+ +N++ N +     G  + IST   +  EVIL
Sbjct: 748 SDKYILLEL---GEIPNLLLDDKEMRQLIINLVRNGLEAMEGGQSLEISTRLEAE-EVIL 803

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            ++D G G+      K   PF    +      +GTGLGL +  ++   +     + S+  
Sbjct: 804 SIKDQGKGIDKSYWGKLGTPFFTTKD------KGTGLGLAICYSIARRHNASIRVDSS-N 856

Query: 800 KGTLIEIIF 808
           +GT  E+ F
Sbjct: 857 RGTTFEVCF 865



 Score =  140 bits (354), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 63/548 (11%), Positives = 148/548 (27%), Gaps = 48/548 (8%)

Query: 74  FVFDPIPRTVRFTW-----------NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS 122
           F   P   ++RF              ++     K +++ L  T+G    ++    L +  
Sbjct: 28  FRETPGD-SLRFMLGAFKHSSQAFLAVNKDASFKAVNQALCNTLGYSRQEL--RLLNERE 84

Query: 123 DILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFG 182
           D+  I P                K  +    G +L +   +         R   G   + 
Sbjct: 85  DLKAIIPAIIAEYENSGPGIKKNKLNIAGKNGEDLMLKYVVN--------RSSDGRYYYI 136

Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKE---KYDIFSQQSPPPHLRMKNK 239
            V+            +  ++++  + +      S+       Y   S            +
Sbjct: 137 FVNDISEQEQTEIRLRESEERYRLIADNAFDLISIIDPRTNCYRYLSPSHHRMLGYSPEE 196

Query: 240 VSSLTE-YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE 298
           +       + H DD  +  K     S       Q      + +    +     + N   E
Sbjct: 197 LIGKNCFEHMHPDDRARVTKKLEEGSRAGHGRAQYRSAKKDGSYIWLEAIGRIIWNEHGE 256

Query: 299 SFEYLSHRN---HPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNL--FYANPSFLLLTK 353
               L  R+              E      VD       V    +    Y N +   +  
Sbjct: 257 EEILLVTRDISERKKAEEALKASEESYRYIVDSAADGITVVDCNSYGPKYTNSALERMLG 316

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
           + S +          L D     D+     V     +      ++     +    N + +
Sbjct: 317 FSSKE-----YSQVNLFDRVHPEDHER---VFKAVKEGERTGYNSAEFRYRKKDGNYIWL 368

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-G 472
                              I  +    +  + ++     +   I +++   I+    +  
Sbjct: 369 DTNGKMLYRDG--QAEWLCISRDISSKKQAEEELRYSEERYRIIADSSFLMISTFCPDKM 426

Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
             +  N  V K+ G   EDI  +    ++     +       E+L               
Sbjct: 427 QYIYWNSTVYKMLGLTAEDISGRDLFYWVHPEDHARACSAFQELLENGEGSC---ECRHR 483

Query: 533 TKEEKLLSLRIIIKKLPFSSCYSLTM---HDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
            K+   + + +  K +   +     +    D+SE ++ ++KL    +  ++  ++ ++  
Sbjct: 484 RKDGSYVWIEVQGKLIRNPAGKLEVLFFSRDVSELREARDKLQCQLEEQQELINNLNELF 543

Query: 590 ARVSHEIR 597
                + R
Sbjct: 544 YIYGPDFR 551



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 30/275 (10%), Positives = 73/275 (26%), Gaps = 22/275 (8%)

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGG 365
                     +               F   +        N +      Y   +       
Sbjct: 24  PDDEFRETPGDSLRFMLGAFKHSSQAFLAVNKDASFKAVNQALCNTLGYSRQEL------ 77

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
              LL+  +         +  Y +    I    + + +    +N   +        +   
Sbjct: 78  --RLLNEREDLKAIIPAIIAEYENSGPGI----KKNKLNIAGKNGEDLMLKYVVNRSSDG 131

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKL 484
                     +  +    + ++     +   I +   D I+II+         + +  ++
Sbjct: 132 R--YYYIFVNDISEQEQTEIRLRESEERYRLIADNAFDLISIIDPRTNCYRYLSPSHHRM 189

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI- 543
            GY  E+++ K     +  +  + +   L E       +        + K+   + L   
Sbjct: 190 LGYSPEELIGKNCFEHMHPDDRARVTKKLEEGSRAGHGR---AQYRSAKKDGSYIWLEAI 246

Query: 544 --IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKK 576
             II          L   DISE K+ +  L  +++
Sbjct: 247 GRIIWNEHGEEEILLVTRDISERKKAEEALKASEE 281



 Score = 43.9 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 10/117 (8%), Positives = 34/117 (29%), Gaps = 6/117 (5%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID-PNNHIGDLLKRQNTWYGKTT 148
                L+ ++ +  + +G    +MIG  + D      ++     + +          +  
Sbjct: 547 GPDFRLRFVNRKTIECLGYSREEMIGKSIFDFVPAEDLELVKARVLEREHCGEVKTYEHQ 606

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
               +G  + + +  + +    +     G +   +               RL +  +
Sbjct: 607 ALCQDGRKVLLRVKGSLIM---KGGNLEGVQ--ILAEDITEQRRMEKEMLRLAQLQT 658


>gi|126660024|ref|ZP_01731146.1| drug sensory protein A [Cyanothece sp. CCY0110]
 gi|126618702|gb|EAZ89449.1| drug sensory protein A [Cyanothece sp. CCY0110]
          Length = 678

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 84/428 (19%), Positives = 173/428 (40%), Gaps = 50/428 (11%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINK--RKMEIEVMQLCSILEATSDGIAIINREGIIL 475
                +  E +       + ++    +   ++  E  +L +++    DG  +++ +  +L
Sbjct: 240 LPFGGELGELIFSFNEMAKRLERYEEQNIEELTAEKAKLDTLVSTIVDGAILLDTDLNLL 299

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ------------ 523
             N    ++F +  +D++ K     L +   + +   L +++  +  +            
Sbjct: 300 LVNPTARRMFIWEGKDVIGKNILELLPEELTAQLQTPLEQMVQQNATESPETEPEKTTET 359

Query: 524 --------TLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLS 572
                     E     S    +++ + +              ++T+ DI+          
Sbjct: 360 TSIQQKINPGEYRISLSQPTSRIVRVLLTQVFDQHRGTLKGIAMTVQDITR--------- 410

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
                  + +  KS F++ VSHE+RTPL  I  F E + ++    L      E+    + 
Sbjct: 411 -----EVELNEAKSQFISNVSHELRTPLFNIKSFIETL-SEFGEDLTETERKEFLETANH 464

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
             + +  +VND+LD+S++ES K   H + V L + + + +   QL A +K +++      
Sbjct: 465 ETDRLTHLVNDVLDLSRLESSK-TYHLDGVDLSQLIEQTLRTCQLNARDKELVLNKEVEA 523

Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST--------THTSNEEVILRVRDT 744
           N+P +L     + Q+  N++ NA+ FTP GG I+I                 V + + DT
Sbjct: 524 NLPLVLGHYDLLLQVMTNLVGNALKFTPPGGIIMIRAYHFKTKSKQFNDKSCVRVEISDT 583

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G+   +       F ++ N +    EGTGLGL + K ++D +  + ++ S    GT  
Sbjct: 584 GIGIAAEDQAAIFDRFFRVEN-RVHTLEGTGLGLSIVKNIIDKHHSQIHLISEVGIGTTF 642

Query: 805 EIIFPLYD 812
                LY 
Sbjct: 643 WFDLALYQ 650


>gi|330985056|gb|EGH83159.1| PAS protein [Pseudomonas syringae pv. lachrymans str. M301315]
          Length = 1185

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 125/749 (16%), Positives = 264/749 (35%), Gaps = 47/749 (6%)

Query: 75  VFDPIPRTVRFTWNI-DAHGYL-KEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH 132
            F+     V F++ + D    L   I+  L     +   +++G         L  D    
Sbjct: 218 KFESRLPPVGFSFAVRDDEQRLLTFINRALDSIEPSIGREVLGR-WTM---GLGADVEGQ 273

Query: 133 IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIY-SRNREFSGFRGFGIVHVNRVDN 191
              L        G    W ++  ++ +        IY   N ++ G     +  ++R+  
Sbjct: 274 RIRL-------TGAERRWLLKHPSVTIATTQHPPYIYKDNNGQWVGLNADVLSRISRM-T 325

Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD 251
             + + + +      +  ++ G + +     +   ++     L         +  +  + 
Sbjct: 326 GLQFVHQEVPSTQQSIEVLRAGLAEMNTSLAENAERRR---FLDFTYSFGGNSWMFVVRS 382

Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
           +         L  +  +LP +                   L++  +     +  R   + 
Sbjct: 383 ERSSRVSLDSLAGKVLALPARH-----------------ALEDLIRREHPLIQLRLVDTY 425

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
                  E+   +   +  +  +++  G L  A  S            I+    L  +L+
Sbjct: 426 DQARALVESGVADATIQNEVGAYLFPAGQLKVA-RSVDGQWSPDRFSVIKTQPELLGILN 484

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
                   A    +  +   + +          W R        +           +  +
Sbjct: 485 KALEEFPVAELRSIRLKWLGSALP-----QPSLWGRIPQWVFWVLALALLTGLVSLVWSS 539

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
            ++ +       +R++  ++    ++ +   + I + + +G ++S NR+  +  G   E 
Sbjct: 540 RLKVQIRQRLKAERQLNDQLAFKHALFDGIPNPIYVRDLKGRLISCNRSYEQSLGISFEQ 599

Query: 492 ILRKPFT--VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
           +  +  T    + +     M+     +L        ++    S K   +    +      
Sbjct: 600 MNGRRLTDVNLIPRALAEQMHTDYLNLLENHQPVFSDRTIELSGKRMDVWQWTVPFFAAD 659

Query: 550 FS-SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                      DI+E K+ + +L  A ++A + +  KS FLA +SHEIRTP+ AIIG  E
Sbjct: 660 GQLQGLLGGWVDITERKRLEQQLQEAMRLAAQANEAKSVFLASMSHEIRTPMGAIIGLLE 719

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
           +           P          RS   ++ ++ + LD+++IE+G M L     SL    
Sbjct: 720 LECAHALRKGHTPSQG--LQVAHRSATELVALIGESLDLARIEAGGMQLSLTVTSLQALF 777

Query: 669 SEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIII 727
              I L    A EK + +R  F+         D   ++Q+  N+L NA+ FT  G  ++ 
Sbjct: 778 EGVIELFSAQAREKDLELRLEFSEQAQGDYWLDPLRLRQVLHNVLGNALKFTRQGSVVLR 837

Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
                 +  V + ++D+G G+     ++  +PF Q  +       G+GLGL + + +V+ 
Sbjct: 838 VVALDDSSRVRIAIQDSGEGIEPERQQQIFQPFIQASDDTAAHYGGSGLGLSITRQLVEL 897

Query: 788 NMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
             G   + S+P +GTL+ I  PL   S P
Sbjct: 898 MKGDISLHSSPGEGTLVNIDLPLVRVSEP 926


>gi|110802656|ref|YP_697530.1| sensory box histidine kinase [Clostridium perfringens SM101]
 gi|110683157|gb|ABG86527.1| sensory box histidine kinase [Clostridium perfringens SM101]
          Length = 791

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 89/380 (23%), Positives = 171/380 (45%), Gaps = 16/380 (4%)

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
           +  +     + ++     L  I     D I  ++  G+I   N +V +   Y  E+I+  
Sbjct: 388 DITEEYTLTKNIKRNEQLLSCINNNVQDLIISVDNNGLITYVNDSVLETLNYTYEEIIGM 447

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--- 552
           P    L +N        L ++   D   +++   +G       + +  II+ L  ++   
Sbjct: 448 PIINLLGKND-----EILNQLKLEDEEDSIKCKLVGKH---SFVYVESIIRTLSDNNEIP 499

Query: 553 -CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI- 610
               +   +++  K+ +N L+   K A+     +++F A +SHE+RTPL  I    +++ 
Sbjct: 500 YGKVIVAKNLTSKKRLEN-LAIKFKEAKAYEQIRNEFFANISHELRTPLNIIYSTIQLLN 558

Query: 611 -KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
            K++      N  Y +Y   +  +   +L ++N+L+D+SKIE G +   F    +   V 
Sbjct: 559 SKHETNYVNFNDFYGKYKQGLKINCYRMLRLINNLIDVSKIEVGFLKADFTNRDIVFLVE 618

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
             +SLV  ++  K I I          I  D   ++++ LN+LSNAI FT + G+I +  
Sbjct: 619 NIVSLVIPHSENKDINIIFDTNVEENIIKCDPVKIERLILNLLSNAIKFTQNHGKIFVDL 678

Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
             + +  V + ++D G+G+           F Q   S + R EG+G+GL + K++ + + 
Sbjct: 679 NISKD-WVKISIKDNGIGIPKEMQASIFDRFVQADKSLKRRNEGSGIGLSIVKSIAELHD 737

Query: 790 GKFYIFSTPAKGTLIEIIFP 809
           GK  + S   KG+   +  P
Sbjct: 738 GKIELISDGIKGSEFIVWLP 757


>gi|167723946|ref|ZP_02407182.1| two-component sensor kinase protein [Burkholderia pseudomallei
           DM98]
          Length = 723

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 94/633 (14%), Positives = 206/633 (32%), Gaps = 28/633 (4%)

Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE 245
             R   D  A   + D          +     ++ +     +            + S   
Sbjct: 93  EIRKQFDALATLVQGDAVQQQRLATLRMLLEKKQHELAATIELRKTEGFDAAQAIVSSDA 152

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
                D           T ++     ++                G L      SF Y+  
Sbjct: 153 GKIFMDRARVMVNEMEATVQQQLRTLRDRARATRDIAIGVGLASGLLTLAVCVSFGYVMR 212

Query: 306 RNHPSLSAYFD---EGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIE 361
           R     +A      E   L   T+             G + + N     +T   +   + 
Sbjct: 213 RLLLVEAAAAHDLFEQRELLHVTLASIGDGVIATDVGGRITFFNRVAEEMTALCADAVVG 272

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                  L      +      P  +    R   +       +  +    L +        
Sbjct: 273 QPIEQ-VLTFRHAATQRVIDNPARVAVERRRTASLPPHTRFVGRSGGE-LPVDGNAAPTF 330

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
           +   + +    +  +  +    + +  +        +EA    + ++ R+G I+  N   
Sbjct: 331 DANGKLVGAVLVVRDVSERERAEERFRLA-------VEAAPTAMIMVGRDGRIVLVNSQA 383

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLL 539
            KLFGY   D++     + + +   +    +          + +   +   G  ++    
Sbjct: 384 EKLFGYARGDMIGHGIDMLVPERFRAGHWAHRDAFFGSPDARPMGEGRDLFGLRRDGSEF 443

Query: 540 SLRIIIKKLPFSSCYSLT--MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
            + I +  +  S    +   + DI+  K+ + +L    +   + +     F    SH+++
Sbjct: 444 PVEIGLNPITTSEGAFVLCSIADITARKRAELELRRRSEELARSNQDLEQFAYVASHDLQ 503

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
            PL A+ G  ++++ +  G L + R  E+  +       +  +++DLL  S++  G++  
Sbjct: 504 EPLRAVAGPLQLLQRRYQGQL-DARADEFIGHAVDGATRMQSLIDDLLSYSRV--GRLED 560

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
              PV  +  + EA+  +     E    +       +P +      +  +  N++ NAI 
Sbjct: 561 ARRPVDCEHVLDEALRNLSAAIRESGAQVTHD---PLPTVHGIEAQLVLLFQNLIGNAIK 617

Query: 718 FTPSG--GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           F       +I +      +  + LRVRD G+G+     E+    F ++    +    GTG
Sbjct: 618 FRGKDRVARIHLEAHPRDDAWL-LRVRDNGIGIDPQYFERIFLIFQRLH--TRREYPGTG 674

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           LGL L K +V+ + G+ ++ S P +GT      
Sbjct: 675 LGLALCKRIVEHHGGRIFVESEPGQGTTFSFTL 707



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/250 (9%), Positives = 56/250 (22%), Gaps = 13/250 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI----GDLLKRQNTWY 144
            D  G +   +    +     A  ++G  +  V    H      I       ++R+ T  
Sbjct: 246 TDVGGRITFFNRVAEEMTALCADAVVGQPIEQVLTFRHAATQRVIDNPARVAVERRRTAS 305

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNR---VDNDPRALGKRLD 201
                  +  +   +P+D  A P +  N +  G     +V          +   L     
Sbjct: 306 LPPHTRFVGRSGGELPVDGNAAPTFDANGKLVGA--VLVVRDVSERERAEERFRLAVEAA 363

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
                +         V  +   +F            + +        H          P 
Sbjct: 364 PTAMIMVGRDGRIVLVNSQAEKLFGYARGDMIGHGIDMLVPERFRAGHWAHRDAFFGSPD 423

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
                            + +++  +     +  +       L      +     +     
Sbjct: 424 ARPMGEGR--DLFGLRRDGSEFPVEIGLNPITTSEGAF--VLCSIADITARKRAELELRR 479

Query: 322 TPETVDKCPI 331
             E + +   
Sbjct: 480 RSEELARSNQ 489



 Score = 48.9 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/243 (8%), Positives = 60/243 (24%), Gaps = 12/243 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL----KRQNTWY 144
           +   G +  ++ +  K  G     MIG  +  +        +    D        +    
Sbjct: 370 VGRDGRIVLVNSQAEKLFGYARGDMIGHGIDMLVPERFRAGHWAHRDAFFGSPDARPMGE 429

Query: 145 GKTTL-WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
           G+       +G+    P+++   PI +    F        +             +R  ++
Sbjct: 430 GRDLFGLRRDGS--EFPVEIGLNPITTSEGAFV----LCSIADITARKRAELELRRRSEE 483

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
            +  ++  +  + V         +    P   ++ +     +  A +      +    + 
Sbjct: 484 LARSNQDLEQFAYVASHDLQEPLRAVAGPLQLLQRRYQGQLDARADEFIGHAVDGATRMQ 543

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
           S    L        +   +         L    +     +                 +  
Sbjct: 544 SLIDDLLSYSRVGRLEDARRPVDCEH-VLDEALRNLSAAIRESGAQVTHDPLPTVHGIEA 602

Query: 324 ETV 326
           + V
Sbjct: 603 QLV 605


>gi|254434207|ref|ZP_05047715.1| response regulator receiver domain protein [Nitrosococcus oceani
           AFC27]
 gi|207090540|gb|EDZ67811.1| response regulator receiver domain protein [Nitrosococcus oceani
           AFC27]
          Length = 1240

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 82/262 (31%), Positives = 135/262 (51%), Gaps = 8/262 (3%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           ++  +  + +L  A+  A + +  K +F A VSHEIRTPL  +IG  E++KN       N
Sbjct: 249 MTVLEAREQELEKARDAALESARIKGEFAANVSHEIRTPLNGVIGILELLKNMGL----N 304

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
           P+  EY      SG  +L+++ ++LD S+IESGK  L      L E + + I L+   A 
Sbjct: 305 PKQREYVQAACNSGETLLELIGNILDFSRIESGKFKLDPINFHLQEILDDVIGLLAAQAQ 364

Query: 681 EKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVI 738
            K + +     +N+P  +  D   ++QI +N+++NA+ FT  G   I +S      E+++
Sbjct: 365 RKELELGYVVLDNVPLSLRGDSARIRQILINLMANAVKFTDRGEVSIEVSLLEKKAEKLV 424

Query: 739 --LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
               VRDTG+G+      +  + F Q  +S   +  GTGLGL + + +VD   G   + S
Sbjct: 425 LHFEVRDTGIGIPVEFRARVFEAFSQADSSTTRKYGGTGLGLAICRQLVDLMGGDIGVES 484

Query: 797 TPAKGTLIEIIFPLYDTSHPHD 818
              KG++     PL +TS P +
Sbjct: 485 GSGKGSIFWFTAPLEETSAPQE 506


>gi|209963966|ref|YP_002296881.1| sensor histidine kinase [Rhodospirillum centenum SW]
 gi|209957432|gb|ACI98068.1| sensor histidine kinase [Rhodospirillum centenum SW]
          Length = 878

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 110/618 (17%), Positives = 213/618 (34%), Gaps = 68/618 (11%)

Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
           D+++++     T E +    +E    +   +          +                 L
Sbjct: 22  DLIRSDADRAATIERTISAMREALRDLETGERGYLGSLDPSRLELARRGHETLDALAADL 81

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
            A  D       +  +   IP        +F A  +     +           G  + + 
Sbjct: 82  EASLDGRPGQQEQAAE---IPVLTDRQAAVFEAAAALARAGRLTDALATFDGEGDRSSIH 138

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
           A     ++ +     +  +R   A +     + W                        Q 
Sbjct: 139 AIHGRLDSLLADAHEHLRNRQTEAVTYAELLVDWLSAGVALSGLGFAVAVAVLLTARRQG 198

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK----LFGY 487
                         +     +      +A  DG  + + E  +++ N    +    L G 
Sbjct: 199 RELAAAQRRAAEAEERLRAAL------DAMPDGFVVYDAEDRLVTWNDRFLERYPSLRGV 252

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL-------- 539
           P   +    F   L     +            + R   E++    + + +          
Sbjct: 253 PA--LKGMRFEDLLRIFIANREIGDPEAYDDTE-RWIAERLAWRRSADGRAFERLTAHGH 309

Query: 540 SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA------------------------- 574
            LR+    +  +        DI+  K  + +L  A                         
Sbjct: 310 WLRVSEHPI-STGGVLSLATDITAQKMREEELRRALEDVDEARREAELQAAEMVALAEEL 368

Query: 575 ----------KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
                     +  +E  +  KSDF+A +SHE+RTPL A++GF++++              
Sbjct: 369 AAARTRADEARAESEAANRAKSDFVAVMSHEVRTPLNALLGFADLLLQTPLTA----EQR 424

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           E+      +G  +L +V+D+LD SK+E+G++ +   P  L         LV+  A E+ +
Sbjct: 425 EWVTLQREAGEALLTVVSDVLDFSKLEAGRLEVDPHPFQLARLARSTSDLVRPTAEERGL 484

Query: 685 LIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
            +R +    +P ++  D + V+Q+ LN+L+NA+ FT  G  + ++    ++  V   V D
Sbjct: 485 ALRVAVDPRLPEVVQGDAKRVRQVLLNLLNNAVKFTERG-HVALAVFPVADGRVRFEVLD 543

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TG+G+   + E+  + F Q   +   R  GTGLGL + + +VD   G   + S P +G+L
Sbjct: 544 TGIGIAPEQQERLFQEFVQADRATARRYGGTGLGLAICRRLVDLMGGAIGVESAPGRGSL 603

Query: 804 IEIIFPLY--DTSHPHDC 819
                PL   ++S P  C
Sbjct: 604 FWFELPLPADESSRPPPC 621



 Score = 45.0 bits (105), Expect = 0.048,   Method: Composition-based stats.
 Identities = 24/252 (9%), Positives = 60/252 (23%), Gaps = 14/252 (5%)

Query: 90  DAHGYLKEISEELPK----TIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
           DA   L   ++   +      G  A  + GMR  D+  I   +      +       W  
Sbjct: 230 DAEDRLVTWNDRFLERYPSLRGVPA--LKGMRFEDLLRIFIANREIGDPEAYDDTERWIA 287

Query: 146 KTTLWPIEGTNLYV-PIDLAALPIYSRNREFSGFRGFGIVHVNRVDN-DPRALGKRLDKK 203
           +   W           +      +       S      +             L + L+  
Sbjct: 288 ERLAWRRSADGRAFERLTAHGHWLRVSEHPISTGGVLSLATDITAQKMREEELRRALEDV 347

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS--SLTEYYAHKDDVLKTEKYPL 261
                E +   + +     ++ + ++     R +++ +  + +++ A     ++T    L
Sbjct: 348 DEARREAELQAAEMVALAEELAAARTRADEARAESEAANRAKSDFVAVMSHEVRTPLNAL 407

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
           L   +  L            +          +       + L      +     D     
Sbjct: 408 LGFADLLLQTPLTAEQ----REWVTLQREAGEALLTVVSDVLDFSKLEAGRLEVDPHPFQ 463

Query: 322 TPETVDKCPIPF 333
                       
Sbjct: 464 LARLARSTSDLV 475



 Score = 42.3 bits (98), Expect = 0.34,   Method: Composition-based stats.
 Identities = 29/285 (10%), Positives = 75/285 (26%), Gaps = 20/285 (7%)

Query: 183 IVHVNRVDNDPRAL--GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV 240
           +        D  A      LD +     +  +     +++     +  +     R+ + +
Sbjct: 66  LARRGHETLDALAADLEASLDGRPGQQEQAAEIPVLTDRQAAVFEAAAALARAGRLTDAL 125

Query: 241 SSLTEYYAH--------KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL 292
           ++               + D L  + +  L + ++      +     L+        G  
Sbjct: 126 ATFDGEGDRSSIHAIHGRLDSLLADAHEHLRNRQTEAVTYAELLVDWLSAGVALSGLGFA 185

Query: 293 QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLL- 350
              +         R   +      E E      +D  P  F VY     L   N  FL  
Sbjct: 186 VAVAVLLTARRQGRELAAAQRRAAEAEERLRAALDAMPDGFVVYDAEDRLVTWNDRFLER 245

Query: 351 ---LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
              L    ++  +     L   +   ++ D  A      + ++R     SA     +   
Sbjct: 246 YPSLRGVPALKGMRFEDLLRIFIANREIGDPEAYDDTERWIAERLAWRRSADGRAFERLT 305

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
            +   +       +           +  +    ++ + ++   + 
Sbjct: 306 AHGHWLRVSEHPISTG-----GVLSLATDITAQKMREEELRRALE 345


>gi|189466962|ref|ZP_03015747.1| hypothetical protein BACINT_03344 [Bacteroides intestinalis DSM
           17393]
 gi|189435226|gb|EDV04211.1| hypothetical protein BACINT_03344 [Bacteroides intestinalis DSM
           17393]
          Length = 870

 Score =  298 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 95/522 (18%), Positives = 189/522 (36%), Gaps = 27/522 (5%)

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKS 356
           ES   +  +    +     E  +               Y     + + N + +L+ +   
Sbjct: 362 ESRRRMHAQTRLLIQNRLVEQRDEFDNIFCSIRDGLITYDTDFRIHFVNRALMLMLELDP 421

Query: 357 V---DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
                         ++       ++     +   R++R  I    +    + ++     +
Sbjct: 422 DTHTARYYEGQMAGSIFHIYSNGEDILQALLKQVRAERRVIPIPEKAFMQEVHKGTYFPV 481

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
           +       ++  +            +        E+        ++A+S      +    
Sbjct: 482 SGEIVPIYSKN-KMTGMAICCRNISEE-------EMHKRFFNLAVDASSVYPWQYDIRTH 533

Query: 474 ILSTNRAVSKLFGYPVED-ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
               + A+   FG P +  ILRK   +F+  +     + + T I                
Sbjct: 534 SFHFSGALLDYFGLPGKQTILRKELELFIHADDLEEAHRHFTAIFK-GEEMDTRMSFRMR 592

Query: 533 TKEEKLLSL---RIIIKKLPFSSCY--SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
           + E K             L   + Y        I  +K  + +L  A+  A +  + KS 
Sbjct: 593 SGEGKYEWWEFRSASYNGLDSEAPYMVLGVCQSIQRYKTTEEELIAARDKALQADTLKSA 652

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           FLA +SHEIRTPL +I+GFS+++K+            ++ + I+ +  L+L ++ND+LD+
Sbjct: 653 FLANMSHEIRTPLNSIVGFSDLLKD--IDAFSPEEVKQFVDTINTNCTLLLALINDILDL 710

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707
           S+IESG M+  F   +L   + +     +L      + +          I+ D   +KQ+
Sbjct: 711 SRIESGSMDFRFAGYNLMFVMQQIYDSQRLSMPP-GVELVMKLPEESKSIVTDSIRLKQV 769

Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
             N ++NA  FT  G  I            +  V DTG G++     +  + F ++ +  
Sbjct: 770 INNFINNAKKFTTQGS-ITFGFQTEDPGYTVFFVEDTGSGISEENQRRIFERFYKVDSFT 828

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
               +G GLGL + + +V+   G+  + S   KGT   +  P
Sbjct: 829 ----QGAGLGLSICQTIVERFRGEINVSSELGKGTRFTVRVP 866


>gi|295699239|ref|YP_003607132.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1002]
 gi|295438452|gb|ADG17621.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1002]
          Length = 979

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 99/460 (21%), Positives = 177/460 (38%), Gaps = 26/460 (5%)

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
           +E     +      +   N          +    I  +    TI  +    LA       
Sbjct: 277 LESRPQAAERTGESRRYRNRLFMASAEVTNSGWTIVYAFTWRTILRDLGPRLAAYIAVVL 336

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTN 478
               F   +                +++        +++ A   G A+++  +G IL   
Sbjct: 337 LVLGFMWLLLLMLDHKLFKPDYERSQRVFESEALNRTMVAAAPSGFALLSFEQGDILL-- 394

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT--EILSLDLRQTLEKITLGSTKEE 536
                      +  L + + +    + P +    L   +          +        + 
Sbjct: 395 -----------QSNLMRAYELNTHPDEPRLHERLLGLYDRSPGAPAWQSDLEMPLRLADG 443

Query: 537 KLLSLRIIIKK--LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
           ++  L + I +           +  D++  K  + KL  A+  A+  +  KS FLA +SH
Sbjct: 444 RVDDLLVSIVRTKYRGKDVLLCSFSDVTTLKNTERKLDEARAAADAANQAKSAFLAMMSH 503

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           EIRTPL AI+G  E++      PL   R       +  S   +L I+ND+LD SK+ESG+
Sbjct: 504 EIRTPLNAILGNLELLGRSPLSPLQEER----VGVVTSSSTALLGIINDILDFSKVESGQ 559

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILS 713
           M L      L + + E  ++ +  A  K +       + + P  L D   ++QI +N++S
Sbjct: 560 MTLESISFDLAQVIREVAAMFEPVAQAKGLEFDCVIDDALAPHYLGDPTRIRQIVINLVS 619

Query: 714 NAIHFTPSGG---QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           NAI FT +G    ++ +      +  +++ V DTG+GMT  + E     F Q  +S   R
Sbjct: 620 NAIKFTATGDVLLEVYLKDDTAEDSPIVIGVSDTGIGMTPQQQESLFHAFTQADSSIARR 679

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             GTGLGL L   + +   G  ++ S    G+   +  P+
Sbjct: 680 YGGTGLGLALCLRLTELMHGTIWVKSELHAGSTFVVTLPI 719


>gi|315125696|ref|YP_004067699.1| aerobic respiration control sensor protein ArcB [Pseudoalteromonas
           sp. SM9913]
 gi|315014210|gb|ADT67548.1| aerobic respiration control sensor protein ArcB [Pseudoalteromonas
           sp. SM9913]
          Length = 772

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 75/399 (18%), Positives = 168/399 (42%), Gaps = 23/399 (5%)

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
                +  E  + +  ++++  + M L SI++++ D     +  G+    N+   ++ G 
Sbjct: 126 RAIEELRREIAERKKTQQELAQQGMLLRSIVDSSPDLFYYRDNNGVFAGCNKMFEEVMGK 185

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
              +++ K        +  S +     ++       T++          ++    +    
Sbjct: 186 TSGELIGKAAEEIFPSHFLSEVLRTDEQVERTHQGLTIDVEYSV---NGEIRWFELRKLP 242

Query: 548 LPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
                           DI+  K+    L             K  F+A +SHE+RTPL  I
Sbjct: 243 FINEQGDYIGLLAFGRDITSRKEAAQALET-------AYKDKGKFIATLSHELRTPLNGI 295

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +G + ++ +       N +   + N +  S   + +I ND++D+ KI+  ++++    ++
Sbjct: 296 VGLTRMLLDTEL----NKQQRSWCNTVFSSAETLGNIFNDIIDLDKIDREQLDIAANEIN 351

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA--DLRSVKQIALNILSNAIHFTPS 721
           + + +++ ++   L A +K +      +  +  I A  D   ++Q+  N+++NA+ FT  
Sbjct: 352 VSDFINDVVNFAGLIAEQKELSFEVKRS-GMLDIYALLDPTRLRQVVWNLINNAVKFTQQ 410

Query: 722 GGQII--ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
           G  I+            +I+++ DTG G+   +L +    + + P+ +     G+G+GL 
Sbjct: 411 GSVILDCARENREDGPWLIIKILDTGEGIPQEQLTRIFDMYYKAPDLKGTNAIGSGIGLA 470

Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
           + KA+V A  G   + STP +G+   +  PL   S P +
Sbjct: 471 VTKALVSAMKGTITVNSTPGEGSCFTVQIPLNLCSAPTE 509



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/122 (13%), Positives = 37/122 (30%), Gaps = 5/122 (4%)

Query: 79  IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK 138
                 F +  D +G     ++   + +G  + ++IG    ++     +       + ++
Sbjct: 157 DSSPDLFYYR-DNNGVFAGCNKMFEEVMGKTSGELIGKAAEEIFPSHFLSEVLRTDEQVE 215

Query: 139 RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
           R  T  G T              +L  LP  +   ++ G   FG         +     +
Sbjct: 216 R--THQGLTIDVEYSVNGEIRWFELRKLPFINEQGDYIGLLAFG--RDITSRKEAAQALE 271

Query: 199 RL 200
             
Sbjct: 272 TA 273



 Score = 47.7 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/173 (10%), Positives = 41/173 (23%), Gaps = 15/173 (8%)

Query: 277 TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY 336
            I+  +         ++   +E  E               +   L    VD  P  F+  
Sbjct: 113 EIDERKMAFHAKHRAIEELRREIAE------RKKTQQELAQQGMLLRSIVDSSPDLFYYR 166

Query: 337 SH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIA 395
            + G     N  F  +    S + I  A     +  +  LS+       +        I 
Sbjct: 167 DNNGVFAGCNKMFEEVMGKTSGELIGKA--AEEIFPSHFLSEVLRTDEQVERTHQGLTID 224

Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
               +                     N+  + +       +    +   + +E
Sbjct: 225 VEYSV------NGEIRWFELRKLPFINEQGDYIGLLAFGRDITSRKEAAQALE 271


>gi|225175738|ref|ZP_03729731.1| integral membrane sensor signal transduction histidine kinase
           [Dethiobacter alkaliphilus AHT 1]
 gi|225168662|gb|EEG77463.1| integral membrane sensor signal transduction histidine kinase
           [Dethiobacter alkaliphilus AHT 1]
          Length = 535

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 75/255 (29%), Positives = 137/255 (53%), Gaps = 4/255 (1%)

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           Q + +LS   +   + +  KS+F A ++HE+RTPLT+++ F E++ ++  GP+  P   E
Sbjct: 281 QGQRRLSQLNEKLGESNRLKSEFTATMTHELRTPLTSVVAFCELMLDEVSGPIT-PEQRE 339

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
               I  S   ++ +VND+LD++K E+G + +H E V L++ +      +   A++  I 
Sbjct: 340 NLLDIKTSAQQLMVLVNDILDMAKHEAGSLRIHKEKVDLNDVLRMVRRSMSAIAHQNGIS 399

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +       +P +  D   ++Q+ +N+++NAI FT  GG+I +S  +   +  I+ V+DTG
Sbjct: 400 LDVE-KTTLPFVYGDRDRIQQMVVNLVANAIKFTKDGGRITVS-ANGEGDFAIISVQDTG 457

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G++   L    + F Q  + +Q R +GTGLGL L K + +   GK  + S   +G+  +
Sbjct: 458 IGISPELLPHIFEKFRQGDHPKQRR-KGTGLGLALVKTLAELQDGKVAVDSEVGEGSCFK 516

Query: 806 IIFPLYDTSHPHDCI 820
           I  P     +    I
Sbjct: 517 IYLPFASEQNETGSI 531


>gi|296156227|ref|ZP_06839066.1| signal transduction histidine kinase with CheB and CheR activity
            [Burkholderia sp. Ch1-1]
 gi|295893733|gb|EFG73512.1| signal transduction histidine kinase with CheB and CheR activity
            [Burkholderia sp. Ch1-1]
          Length = 1344

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 117/781 (14%), Positives = 254/781 (32%), Gaps = 65/781 (8%)

Query: 75   VFDPIPRTVRFTW-----NIDAH-GYLKEISEEL----------PKTIGNYAFKMIGMRL 118
            VF       R+ +     + D   G  +E+S                 G       G R 
Sbjct: 440  VFHFALNPKRYLFLGRSESTDPDSGQFQEVSRAWRIYQRSPVTTAVVSGYRFSAPGGRRE 499

Query: 119  CDVSDILHIDPNNHIGDL----LKRQNTWYGKTT-----LWPIEGTNLYVPIDLAALP-- 167
               S     + +    +L    L +++            +    G+           P  
Sbjct: 500  EFPSASRGGNRSKGYAELVNNTLLKEHHAASVLINAAHQVLYASGSTDEYLRQPTGEPTG 559

Query: 168  -IYSRNREFSGFRGFGIVHVNR-VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF 225
             I    RE    +   ++      +          D     +                + 
Sbjct: 560  NILDMAREGLRLKLRIVLRRATQDEAAAPVSEVVSDGGAPAVKITVTRPFDTAHTGKALL 619

Query: 226  SQQSPPPHLRMKNKVSS--LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY 283
               +  P       ++   +     H +  L+T +  L ++ E       +    N    
Sbjct: 620  VIFARAPVAERPASLAPTGVDSDLWHLESELRTTQVELGSTIEELEESNSELRVSNEEIL 679

Query: 284  TKKQYFGTLQNNSKESFEYLSHRNHP------SLSAYFDEGENLTPETVDKCP----IPF 333
            +  +   +     + S E L   N         L     + E L+ +  +          
Sbjct: 680  SMNEELRSANEELETSKEELQALNEQLNLVNSQLGQKVRQLEVLSEDVTNLLASTEIATL 739

Query: 334  FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393
             +  H  +    PS   +      D       ++ +L  P           ++       
Sbjct: 740  LLDRHAVIKRFTPSAARIFGLALADI---DRPITNVLGNPLGDALLEDVQRVVSAQTGQ- 795

Query: 394  IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
              A   + T+             P+      P          +    +      +    +
Sbjct: 796  --AEKEIQTLT---GEWYVRRITPYIAVQGTP-PAGVVVTWNDITHVK----ASDERSRR 845

Query: 454  LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
            L ++++ ++D + + +  G +++ NRA + ++GY   + L    +  L          ++
Sbjct: 846  LAAVVQDSNDAMTVFDLSGRLIAWNRAATAIYGYTEAEALCMTVSDMLPPGARQDHLDFI 905

Query: 514  TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM----HDISEWKQEKN 569
                  +   +    T   TK  ++L + I +  L     +++ +     ++++      
Sbjct: 906  RYAEHNEALHSY--ETQRVTKSGRVLDIWITLSILSDDQGHAVAIATTERELTDRSLSNT 963

Query: 570  KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
            +L    +   +    K++FLA + HE+R PL A+    +++ ++    +   +       
Sbjct: 964  QLRERAERLAQADRRKNEFLAMLGHELRNPLAALCSAGDLLASE---TVDVRQKAWAVGV 1020

Query: 630  IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
            I R G  +  +VN++LD+++I SG + L+ + V+L+  V  A+ + +    E+   +  +
Sbjct: 1021 IQRQGRAMTQLVNEMLDLTRITSGSIKLNRQAVTLETVVQSALEVCRPIVEERHHTLSVA 1080

Query: 690  FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749
                   +  D   + Q+  NI+ NA  +T  GG+I + T   +   + LRV+D G G+ 
Sbjct: 1081 LPEEPVLMYVDPTRLSQVIENIVINAAKYTEPGGKIDL-TATKNGRRLSLRVKDNGAGIA 1139

Query: 750  NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
               L      F Q P        G G+GL + + +V+ + G     S    G+   +  P
Sbjct: 1140 PSMLNTLFDMFVQGPLPYGQLHNGLGVGLSVVRRLVELHGGSVEAVSDGKTGSEFIVDLP 1199

Query: 810  L 810
            L
Sbjct: 1200 L 1200


>gi|24111778|ref|NP_706288.1| phosphate regulon sensor protein [Shigella flexneri 2a str. 301]
 gi|30061896|ref|NP_836067.1| phosphate regulon sensor protein [Shigella flexneri 2a str. 2457T]
 gi|82542889|ref|YP_406836.1| phosphate regulon sensor protein [Shigella boydii Sb227]
 gi|110804423|ref|YP_687943.1| phosphate regulon sensor protein [Shigella flexneri 5 str. 8401]
 gi|300936384|ref|ZP_07151312.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 21-1]
 gi|24050565|gb|AAN41995.1| positive and negative sensor protein for pho regulon [Shigella
           flexneri 2a str. 301]
 gi|30040140|gb|AAP15873.1| positive and negative sensor protein for pho regulon [Shigella
           flexneri 2a str. 2457T]
 gi|81244300|gb|ABB65008.1| positive and negative sensor protein for pho regulon [Shigella
           boydii Sb227]
 gi|110613971|gb|ABF02638.1| positive and negative sensor protein for pho regulon [Shigella
           flexneri 5 str. 8401]
 gi|281599732|gb|ADA72716.1| Phosphate regulon sensor protein PhoR [Shigella flexneri 2002017]
 gi|300458490|gb|EFK21983.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 21-1]
 gi|313646985|gb|EFS11442.1| phosphate regulon sensor kinase PhoR [Shigella flexneri 2a str.
           2457T]
 gi|332098651|gb|EGJ03617.1| phosphate regulon sensor kinase PhoR [Shigella boydii 3594-74]
 gi|332760678|gb|EGJ90966.1| phosphate regulon sensor kinase PhoR [Shigella flexneri 4343-70]
 gi|333007828|gb|EGK27304.1| phosphate regulon sensor kinase PhoR [Shigella flexneri K-218]
 gi|333022015|gb|EGK41260.1| phosphate regulon sensor kinase PhoR [Shigella flexneri K-304]
          Length = 431

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 73/427 (17%), Positives = 150/427 (35%), Gaps = 37/427 (8%)

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             +L       I     L  + W     L +         +        G+    +  + 
Sbjct: 33  WFLLASVTGLLIWHFWNLLRLSW----WLWVDRSMTPPPGRGSWEPLLYGLHQMQLRNKK 88

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            +R++   + +  S  E+  D + +   EG I   N    ++ G    +   +     L 
Sbjct: 89  RRRELGNLIKRFRSGAESLPDAVVLTTEEGGIFWCNGLAQQILGLRWPEDNGQNILNLLR 148

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
               +               +   +         + L +R++           +   D++
Sbjct: 149 YPEFTQYL----------KTRDFSRPLNLVLNTGRHLEIRVMPYTHKQ---LLMVARDVT 195

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  Q +                + +F A VSHE+RTPLT + G+ E++  Q        +
Sbjct: 196 QMHQLEG--------------ARRNFFANVSHELRTPLTVLQGYLEMMDEQPLEGAVREK 241

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                + +      +  +V  LL +SKIE+    L  E V +   +       Q  + +K
Sbjct: 242 A---LHTMREQTQRMEGLVKQLLTLSKIEAAPTQLLNEKVDVPMMLRVVEREAQTLSQKK 298

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           +        N + ++  +   ++    N++ NA++ TP G  I +      +      V 
Sbjct: 299 Q-TFTFEIDNGL-KVSGNEDQLRSAISNLVYNAVNHTPEGTHITVRWQRVPHG-AEFSVE 355

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G G+    + +  + F ++  ++  +  G+GLGL + K  V+ +  +  I ST  KGT
Sbjct: 356 DNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHAVNHHESRLNIESTVGKGT 415

Query: 803 LIEIIFP 809
               + P
Sbjct: 416 RFSFVIP 422


>gi|17228473|ref|NP_485021.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17130324|dbj|BAB72935.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 1186

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 118/777 (15%), Positives = 251/777 (32%), Gaps = 100/777 (12%)

Query: 124  ILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI 183
                        LL  +     +  L   + +++++ +   + PI     + +      +
Sbjct: 290  PYDPYEYPLPRSLLTGEVISQEEMLLRWEDNSHIFISV--NSAPILDSQGQIAAAA--IV 345

Query: 184  VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVS 241
                       +  ++ +++F  + E      S    ++                  +  
Sbjct: 346  FQDVTERKHLESELQQREQEFKMVAENAPDIISRIDREFRHLYVSPAVEAATGIPPEEFI 405

Query: 242  SLTEYYAHKDDVL---------KTEKYPLLTSEESSLPEQEDFHT---INLNQYTKKQYF 289
              T       + +         +          E S P          + + ++    Y 
Sbjct: 406  GKTNTELGMPEEICNFWCENLQRAFDTGEKQVVEFSFPTPTGLRWYQSLIVPEFASDGYA 465

Query: 290  GTLQNNSKESFEYLSHRNHPS--------LSAYFDEGENLTPETVDKCPIPF-FVYSHGN 340
             TL N +++  +Y                        +       +  P+    + S   
Sbjct: 466  TTLINVARDVTDYKQIEQALRDNEERLRLALTVAQAAQRQLATIFETSPVGIALLDSQQR 525

Query: 341  LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400
                N +   +        +     ++ L              +     +     + A  
Sbjct: 526  YVAINQALAQINGLTREQHLGR--SIAELFGQSDPQLVQVFHDIY-TTGEPFISPSFAVN 582

Query: 401  HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR---------KMEIEV 451
               + +R+             N   +         +  +    +R         K+    
Sbjct: 583  VPGRSDRQPGYY-NVYYLPTTNSNHQVEDVLVYVLDVTEQIRLERGQRFLSETSKVLASS 641

Query: 452  MQLCSILEATSDG----------IAIINREGIIL-----STNRA----VSKLFG-YPVED 491
            +   + LE  +            + ++  +G+I        + A      ++   YP+  
Sbjct: 642  LDYQTTLERLAQLAVPELADWCTVHMMAEDGLIEQIAVAHVDPAKLEWAEEIRRKYPLNL 701

Query: 492  ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
               +   + L      ++     E+L    R       L     +  +++      L   
Sbjct: 702  NDPRGAALTLRTGQSDLLIDISDELLVQSARDPEHLEILRRVGFKSAMTV-----PLRTQ 756

Query: 552  SCYSLTMHDISEW---------KQEKNKLSHA-----------------KKIAEKESSHK 585
            +     +  IS            Q   +L++                  +  AE  +  K
Sbjct: 757  TRTLGVISFISAESGHKYDQGSMQLAEELAYRASLAIDNAHLYRLAQSDRTKAEAANRIK 816

Query: 586  SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
             +FLA +SHE+R+PL  I+G+S ++++++  P    +  +    I+R+  L   ++ DLL
Sbjct: 817  DEFLAVLSHELRSPLNPILGWSRILRSKQLSPT---KVEQALETIERNAKLQAQLIEDLL 873

Query: 646  DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
            D+S+I  GKM L+   V+L   ++ A+  VQL A  K I I+T+       ++ D   ++
Sbjct: 874  DVSRILQGKMTLNVASVNLAATIAAALETVQLAAEAKNIHIQTTLKPISATVVGDQNRLQ 933

Query: 706  QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
            Q+  N+LSNA+ FTPSGGQI +      N    ++V+D+G G+    L    + F Q   
Sbjct: 934  QVVWNLLSNAVKFTPSGGQIEVQLEQV-NLYAQIQVKDSGKGIAREFLPYVFEYFRQEDG 992

Query: 766  SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK--GTLIEIIFP--LYDTSHPHD 818
            +   +  G GLGL + +   + + G   + S   +  G    +  P  L +   P D
Sbjct: 993  ATTRQFGGLGLGLAIVRHFTELHGGTVQVSS-LGQDLGATFTVRLPLNLVEQELPAD 1048



 Score =  112 bits (280), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 50/415 (12%), Positives = 122/415 (29%), Gaps = 30/415 (7%)

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL--RMKNKVSSL---TEYYAHKDDVLK 255
           +++ + + E          E +           +  +   ++       E +      L 
Sbjct: 102 ERQITTILESITDAFVAFDENWHYTYVNQAAVKILHKTPAELIGKHVWDEVFPELVGGLA 161

Query: 256 TEKYPLLTSEESSLPEQEDFHT----INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
            ++      E+ ++  +E        +  N Y   Q       +  E  +  +      L
Sbjct: 162 YQELHRAVVEQVAVSWEEFGEPVQCYLEANAYPFSQGVAVYFRDITERKQ--AEAERERL 219

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYSH--GNLFYANPSFLLLTKYKSVDDIEIAGGLS-- 367
               +         + + P    +     G L   N     + +Y+  D +E+       
Sbjct: 220 LHELETERARFEAVLRQMPAGVMIADAASGKLVLTNEQAKQILRYQFEDSLELKEYAPVT 279

Query: 368 --TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
                       +    P+         I+    L  ++W   + + ++       +   
Sbjct: 280 PFAAFRCDGQPYDPYEYPLPRSLLTGEVISQEEML--LRWEDNSHIFISVNSAPILDSQG 337

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
           +      +  +  + +  + +++    +   + E   D I+ I+RE   L  + AV    
Sbjct: 338 QIAAAAIVFQDVTERKHLESELQQREQEFKMVAENAPDIISRIDREFRHLYVSPAVEAAT 397

Query: 486 GYPVEDILRKPFTVF-LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
           G P E+ + K  T   + +   +     L        +Q +E      T    L   + +
Sbjct: 398 GIPPEEFIGKTNTELGMPEEICNFWCENLQRAFDTGEKQVVEFSFPTPTG---LRWYQSL 454

Query: 545 IKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAEKE---SSHKSDFLARV 592
           I     S  Y         D++++KQ +  L   ++        +      LA +
Sbjct: 455 IVPEFASDGYATTLINVARDVTDYKQIEQALRDNEERLRLALTVAQAAQRQLATI 509



 Score =  108 bits (269), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 64/599 (10%), Positives = 158/599 (26%), Gaps = 77/599 (12%)

Query: 20  GNTQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPI 79
           G+ Q L+ + I         +++      F Q    +Q  + +++        T +    
Sbjct: 56  GSEQSLADEAIST--NAGNPEQQLILATVFHQDITNNQQLQLITSPETERQITTILESIT 113

Query: 80  PRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR 139
              V F    D + +   +++   K +     ++IG     V D +  +    +      
Sbjct: 114 DAFVAF----DENWHYTYVNQAAVKILHKTPAELIGKH---VWDEVFPELVGGLAYQELH 166

Query: 140 QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI-VHVNRVDNDPRALGK 198
           +         W   G  +   ++  A P           +G  +            A  +
Sbjct: 167 RAVVEQVAVSWEEFGEPVQCYLEANAYPFS---------QGVAVYFRDITERKQAEAERE 217

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
           RL  +        +           I    +    L + N+ +     Y  +D +   E 
Sbjct: 218 RLLHELETERARFEAVLRQMPAGVMIA--DAASGKLVLTNEQAKQILRYQFEDSLELKEY 275

Query: 259 YPLLT----------------SEESSLPEQEDFHTINLNQYTKK-----------QYFGT 291
            P+                      SL   E      +    +                +
Sbjct: 276 APVTPFAAFRCDGQPYDPYEYPLPRSLLTGEVISQEEMLLRWEDNSHIFISVNSAPILDS 335

Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLL 350
               +  +  +        L +   + E       +  P     +       Y +P+   
Sbjct: 336 QGQIAAAAIVFQDVTERKHLESELQQREQEFKMVAENAPDIISRIDREFRHLYVSPAVEA 395

Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
            T     + I      +T L  P+   N   + +                 T        
Sbjct: 396 ATGIPPEEFIGK---TNTELGMPEEICNFWCENLQRAFDTGEKQVVEFSFPTPT----GL 448

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC--------------S 456
                +   +            +  +  D +  ++ +     +L               +
Sbjct: 449 RWYQSLIVPEFASDGYATTLINVARDVTDYKQIEQALRDNEERLRLALTVAQAAQRQLAT 508

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           I E +  GIA+++ +   ++ N+A++++ G   E  L +       Q+ P ++     +I
Sbjct: 509 IFETSPVGIALLDSQQRYVAINQALAQINGLTREQHLGRSIAELFGQSDPQLV-QVFHDI 567

Query: 517 LSLDLRQT---LEKITLGS-TKEEKLLSLRI--IIKKLPFSSCYSLTMHDISEWKQEKN 569
            +               G   ++    ++                + + D++E  + + 
Sbjct: 568 YTTGEPFISPSFAVNVPGRSDRQPGYYNVYYLPTTNSNHQVEDVLVYVLDVTEQIRLER 626



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 49/399 (12%), Positives = 112/399 (28%), Gaps = 37/399 (9%)

Query: 219 KEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTI 278
                  S     P  R    ++S        D+    +        E          ++
Sbjct: 4   DTTGKFVSNWDSEPKHRYSVSLTSTAW--RSLDEEAHKQGISRSELIEHFARNLGSEQSL 61

Query: 279 NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH 338
                +        Q      F      N         E E      ++     F  +  
Sbjct: 62  ADEAISTNAGNPEQQLILATVFHQDITNNQQLQLITSPETERQITTILESITDAFVAFDE 121

Query: 339 G-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397
             +  Y N + + +      + I            P+L    A + +     ++  ++  
Sbjct: 122 NWHYTYVNQAAVKILHKTPAELIGKHVWDEVF---PELVGGLAYQELHRAVVEQVAVSWE 178

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK-------MEIE 450
                +Q             + +AN +P +        +  + +  + +       +E E
Sbjct: 179 EFGEPVQ------------CYLEANAYPFSQGVAVYFRDITERKQAEAERERLLHELETE 226

Query: 451 VMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVED-------ILRKPFTVFLE 502
             +  ++L     G+ I +   G ++ TN    ++  Y  ED           PF  F  
Sbjct: 227 RARFEAVLRQMPAGVMIADAASGKLVLTNEQAKQILRYQFEDSLELKEYAPVTPFAAFRC 286

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TM 558
              P     Y      L      ++  L   ++   + + +    +  S           
Sbjct: 287 DGQPYDPYEYPLPRSLLTGEVISQEEMLLRWEDNSHIFISVNSAPILDSQGQIAAAAIVF 346

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
            D++E K  +++L   ++  +  + +  D ++R+  E R
Sbjct: 347 QDVTERKHLESELQQREQEFKMVAENAPDIISRIDREFR 385



 Score = 42.3 bits (98), Expect = 0.36,   Method: Composition-based stats.
 Identities = 20/227 (8%), Positives = 58/227 (25%), Gaps = 5/227 (2%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D+      I++ L +  G    + +G  + ++             D+      +   + 
Sbjct: 520 LDSQQRYVAINQALAQINGLTREQHLGRSIAELFGQSDPQLVQVFHDIYTTGEPFISPSF 579

Query: 149 LWPIEGTNLYVP--IDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
              + G +   P   ++  LP  + N +         V             + L +    
Sbjct: 580 AVNVPGRSDRQPGYYNVYYLPTTNSNHQVEDV--LVYVLDVTEQIRLERGQRFLSETSKV 637

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
           L       +++E+       + +    + M  +   + +      D  K E    +   +
Sbjct: 638 LASSLDYQTTLERLAQLAVPELADWCTVHMMAEDGLIEQIAVAHVDPAKLEWAEEIR-RK 696

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
             L   +        +  +      + +                   
Sbjct: 697 YPLNLNDPRGAALTLRTGQSDLLIDISDELLVQSARDPEHLEILRRV 743


>gi|306813134|ref|ZP_07447327.1| phosphate regulon sensor protein [Escherichia coli NC101]
 gi|305853897|gb|EFM54336.1| phosphate regulon sensor protein [Escherichia coli NC101]
          Length = 431

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 73/427 (17%), Positives = 151/427 (35%), Gaps = 37/427 (8%)

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             +L       I     L  + W     L +         +        G+    +  + 
Sbjct: 33  WFLLASVTGLLIWHFWNLLRLSW----WLWVDRSMTPPPGRGSWEPLLYGLHQMQLRNKK 88

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            +R++   + +  S  E+  D + +   EG I   N    ++ G    +   +     L 
Sbjct: 89  RRRELGNLIKRFRSGAESLPDAVVLTTEEGGIFWCNGLAQQILGLRWPEDNGQNILNLLR 148

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
               +               +   +         + L +R++           +   D++
Sbjct: 149 YPEFTQYL----------KTRDFSRPLNLVLNTGRHLEIRVMPYTHKQ---LLMVARDVT 195

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  Q +                + +F A VSHE+RTPLT + G+ E++  Q        +
Sbjct: 196 QMHQLEG--------------ARRNFFANVSHELRTPLTVLQGYLEMMDEQPLEGAVREK 241

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                + +      +  +V  LL +SKIE+   +L  E V +   +       Q  + +K
Sbjct: 242 A---LHTMREQTQRMEGLVKQLLTLSKIEAAPTHLLNEKVDVPMMLRVVEREAQTLSQKK 298

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           +        N + ++  +   ++    N++ NA++ TP G  I +      +      V 
Sbjct: 299 Q-TFTFEIDNGL-KVSGNEDQLRSAISNLVHNAVNHTPEGTHITVRWQRVPHG-AEFSVE 355

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G G+    + +  + F ++  ++  +  G+GLGL + K  V+ +  +  I ST  KGT
Sbjct: 356 DNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHAVNHHESRLNIESTVGKGT 415

Query: 803 LIEIIFP 809
               + P
Sbjct: 416 RFSFVIP 422


>gi|150016429|ref|YP_001308683.1| multi-sensor signal transduction histidine kinase [Clostridium
           beijerinckii NCIMB 8052]
 gi|149902894|gb|ABR33727.1| multi-sensor signal transduction histidine kinase [Clostridium
           beijerinckii NCIMB 8052]
          Length = 613

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 85/393 (21%), Positives = 169/393 (43%), Gaps = 16/393 (4%)

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490
             +E E  +    +  ++    QL   +E     I +   +G +   NR+ S + GY +E
Sbjct: 189 IILEEEMNERTRTEEALKESERQLRHSIEEAPVPIMLYTEDGFVKKINRSWSDITGYRLE 248

Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS---LRIIIKK 547
           DI        + +     ++    + L    ++         T +  +         I  
Sbjct: 249 DIPMISEWADISEAFKEELSSTNIKKLFNSEKRQNNGEFSIRTHDGSIRICNFYSAYIGD 308

Query: 548 LPFSSCYSL-TMHDISEWKQEKNKLSHAKKIAEKE------SSHKSDFLARVSHEIRTPL 600
           L       +    D++E K+ +      ++  +K          +++F + +SHE+RTP+
Sbjct: 309 LEDGHKLFMKVAIDVTEKKRMEELQKSVEEERKKLYEIKEYDRIRTEFFSNISHELRTPI 368

Query: 601 TAIIGFSE----VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           + I    +     +K+  F      +Y  Y   + ++   +L ++N+++DI+KI+SG  N
Sbjct: 369 SVIFSALQIHELRLKDCIFENRSIDKYK-YTKIMKQNCYRILRLINNIIDITKIDSGYFN 427

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716
           ++   + +   +      V  Y   K + +          +  D   +++I LNILSNA+
Sbjct: 428 INEHNIDIIALIENITLSVADYIENKGLSLIFDTNVEEKIMSCDPEKIERIILNILSNAV 487

Query: 717 HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
            FT SGG+I +S      +++ ++++DTG G+   +L    + F Q+  S     EG+G+
Sbjct: 488 KFTSSGGKITVSIE-DCYDKICIKIKDTGRGIPQDKLNSIFERFIQVDKSLARDHEGSGI 546

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GL L K++V+ + G   + S    GT   I  P
Sbjct: 547 GLSLVKSLVELHGGVISVKSKINYGTEFVIYIP 579


>gi|238756595|ref|ZP_04617893.1| Aerobic respiration control sensor protein arcB [Yersinia ruckeri
           ATCC 29473]
 gi|238705193|gb|EEP97612.1| Aerobic respiration control sensor protein arcB [Yersinia ruckeri
           ATCC 29473]
          Length = 779

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 79/374 (21%), Positives = 161/374 (43%), Gaps = 16/374 (4%)

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
                + ++  +   L S L+A+ D +   N +      NRA+  L G   + ++     
Sbjct: 142 HREQAQIELGQQSALLRSFLDASPDLVYYRNEDNEFSGCNRAMELLTGKSEKQLVGLTPQ 201

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII--KKLPFSSCYSL 556
                +    +     ++   ++  T E+  +     +    LR +    ++        
Sbjct: 202 EVYTPDIAEKVMETDEKVFRHNVSLTYEQWLVYPDGRKACFELRKVPFYDRVGKRHGLMG 261

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
              DI+E K+ ++ L +        S  K+ F++ +SHE+RTPL  I+G S ++ +    
Sbjct: 262 FGRDITERKRYQDALEN-------ASRDKTTFISTISHELRTPLNGIVGLSRILLDTDL- 313

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
              N   ++Y   I  S   + +I ND++++ K+E  K+ L  +P+     +++  +L  
Sbjct: 314 ---NDEQLKYLKTIHVSAITLGNIFNDIIEMDKLERRKVQLDNQPIDFTGFMADLENLSG 370

Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
           L    K +         +P  I+ D   ++QI  N++ NA+ FT  G QI++     + +
Sbjct: 371 LLVQPKGLKFLMEPQGRLPEKIITDGTRLRQILWNLIGNAVKFTQQG-QIVVRIYRENTD 429

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQI-PNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
            +I  V D+G+G+   E +K    + Q+   +      GTG+GL ++K +  +  G   +
Sbjct: 430 RLIFEVEDSGMGIPEDEQDKIFAMYYQVKDRNGGRPATGTGIGLAVSKRLAQSMGGDIMV 489

Query: 795 FSTPAKGTLIEIIF 808
            ST   G+   +  
Sbjct: 490 KSTQGVGSCFTLSI 503



 Score = 42.3 bits (98), Expect = 0.33,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 58/224 (25%), Gaps = 10/224 (4%)

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
           V  L E       ++   +       E +   QE+   +NL    +++          + 
Sbjct: 77  VEQLEESRQRLSRLVDKLEIMRYRDRELNQQLQENIAQLNLEIIEREKAEKAHLQVVDKL 136

Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVD 358
            E + HR    +     +   L    +D  P   +  +        N +  LLT      
Sbjct: 137 KEEMGHREQAQIE--LGQQSALLRSFLDASPDLVYYRNEDNEFSGCNRAMELLTGKSEKQ 194

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
            +        L      + + A K +           +      + +             
Sbjct: 195 LVG-------LTPQEVYTPDIAEKVMETDEKVFRHNVSLTYEQWLVYPDGRKACFELRKV 247

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
              ++  +     G   +  + +  +  +E       + +   S
Sbjct: 248 PFYDRVGKRHGLMGFGRDITERKRYQDALENASRDKTTFISTIS 291



 Score = 41.9 bits (97), Expect = 0.44,   Method: Composition-based stats.
 Identities = 15/124 (12%), Positives = 35/124 (28%), Gaps = 5/124 (4%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN-TWYGKTTLWPIE 153
               +  +    G    +++G+   +V      +      + + R N +   +  L   +
Sbjct: 177 FSGCNRAMELLTGKSEKQLVGLTPQEVYTPDIAEKVMETDEKVFRHNVSLTYEQWLVYPD 236

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
           G       +L  +P Y R  +  G  GFG           +   +   +  +        
Sbjct: 237 GRKACF--ELRKVPFYDRVGKRHGLMGFG--RDITERKRYQDALENASRDKTTFISTISH 292

Query: 214 HSSV 217
               
Sbjct: 293 ELRT 296


>gi|27377287|ref|NP_768816.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
           USDA 110]
 gi|27350430|dbj|BAC47441.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
           USDA 110]
          Length = 634

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 84/507 (16%), Positives = 176/507 (34%), Gaps = 38/507 (7%)

Query: 334 FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393
            +   G +   N     L  Y + + I  +  L         +       + +       
Sbjct: 7   MIDVDGTVRSWNSGAERLKGYSADEIIGKSFSL--FYPPEDRAKELPQTALKIAAETGR- 63

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
              S+    ++ +     A+  +     ++  + +    +  +  + +     +     +
Sbjct: 64  --FSSEGWRVRKDGTRFWALVVVDAI-RDEQGQVIGFAKVTRDITERQQAHNDLLESERR 120

Query: 454 LCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
              ++EA  D  I  ++  G I + N    ++ GY  ++I+ + F+ F            
Sbjct: 121 YRRLIEAVVDYAIFQLDPAGNITTWNPGAQRIKGYDPDEIIGQHFSRFYTPEDIQTGVPK 180

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEK 568
              +         E       K+       ++I ++   +   +       D++E KQ +
Sbjct: 181 -RALAEAAKLGRFEAEGWRVRKDSSRFWASVVIDRITDEAGELVGFAKVTRDVTERKQAQ 239

Query: 569 NKLSHAKKIAEKES--SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
           ++L   ++                 ++H+    L  ++G  E  +    G   +      
Sbjct: 240 DELQRTQQQLAASQKLEAVGQLSGGIAHDFNNLLMIVLGNLETAERNSRGLTNSTNLQRA 299

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
                R       + + LL  S+ ++    L  +P++L+  ++     +Q     +RI +
Sbjct: 300 LANAKRGAQRAAALTSRLLAFSRRQA----LDPQPINLNIFLNGLQEFLQ-RTLGERIEV 354

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST--------------THT 732
           +T  +  +  I AD   ++   +N+  NA    P GG++ +                  +
Sbjct: 355 QTVGSAGLWSIEADTNHLESAIINLGINARDAMPDGGKLTVEAMNVLADEDYCRVNPELS 414

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
               VI+ V DTG GMT   L  A +PF          G+GTGLGL      V  + G  
Sbjct: 415 PGHYVIVCVTDTGTGMTADVLNHAFEPFFTTKEL----GQGTGLGLSQVYGFVKQSGGHV 470

Query: 793 YIFSTPAKGTLIEIIFPLYD-TSHPHD 818
            I+S   +GT I + FP Y   + P +
Sbjct: 471 KIYSEVGQGTSIRMYFPRYHGDARPAE 497



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/276 (9%), Positives = 71/276 (25%), Gaps = 10/276 (3%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + ID  G ++  +    +  G  A ++IG                    L     T   
Sbjct: 5   IYMIDVDGTVRSWNSGAERLKGYSADEIIGKSFSLFYPPEDRAKELPQTALKIAAETGRF 64

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
            +  W +          +    I     +  GF    +                 ++++ 
Sbjct: 65  SSEGWRVRKDGTRFWALVVVDAIRDEQGQVIGFAK--VTRDITERQQAHNDLLESERRYR 122

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHL---RMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
            L E    ++  + +     +  +P          +++        +  + ++T      
Sbjct: 123 RLIEAVVDYAIFQLDPAGNITTWNPGAQRIKGYDPDEIIGQHFSRFYTPEDIQTGVPKRA 182

Query: 263 TSEESSLPEQEDFHTI---NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
            +E + L   E        + +++        + + + E   +       +      +  
Sbjct: 183 LAEAAKLGRFEAEGWRVRKDSSRFWASVVIDRITDEAGELVGFAKVTRDVTERKQAQDEL 242

Query: 320 NLTPETVDKCP--IPFFVYSHGNLFYANPSFLLLTK 353
             T + +            S G     N   +++  
Sbjct: 243 QRTQQQLAASQKLEAVGQLSGGIAHDFNNLLMIVLG 278



 Score = 78.9 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 21/133 (15%), Positives = 46/133 (34%), Gaps = 5/133 (3%)

Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520
               I +I+ +G + S N    +L GY  ++I+ K F++F      +      T +    
Sbjct: 1   MDYAIYMIDVDGTVRSWNSGAERLKGYSADEIIGKSFSLFYPPEDRAKELPQ-TALKIAA 59

Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKK 576
                        K+       +++  +       +       DI+E +Q  N L  +++
Sbjct: 60  ETGRFSSEGWRVRKDGTRFWALVVVDAIRDEQGQVIGFAKVTRDITERQQAHNDLLESER 119

Query: 577 IAEKESSHKSDFL 589
              +      D+ 
Sbjct: 120 RYRRLIEAVVDYA 132



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/260 (9%), Positives = 59/260 (22%), Gaps = 15/260 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + +D  G +   +    +  G    ++IG           I        L +       
Sbjct: 133 IFQLDPAGNITTWNPGAQRIKGYDPDEIIGQHFSRFYTPEDIQTGVPKRALAEAAKLGRF 192

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR------ALGKR 199
           +   W +   +      +    I     E  GF    +          +           
Sbjct: 193 EAEGWRVRKDSSRFWASVVIDRITDEAGELVGFAK--VTRDVTERKQAQDELQRTQQQLA 250

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
             +K   + ++  G +        I            +   +S     A  +     ++ 
Sbjct: 251 ASQKLEAVGQLSGGIAHDFNNLLMIVLGNLETAERNSRGLTNSTNLQRALANAKRGAQRA 310

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
             LTS   +   ++      +N              +      +       L +   +  
Sbjct: 311 AALTSRLLAFSRRQALDPQPINLNIFLNGLQEFLQRTLGERIEVQTVGSAGLWSIEADTN 370

Query: 320 NLTPETV-------DKCPIP 332
           +L    +       D  P  
Sbjct: 371 HLESAIINLGINARDAMPDG 390


>gi|260460265|ref|ZP_05808517.1| PAS/PAC sensor signal transduction histidine kinase [Mesorhizobium
            opportunistum WSM2075]
 gi|259033910|gb|EEW35169.1| PAS/PAC sensor signal transduction histidine kinase [Mesorhizobium
            opportunistum WSM2075]
          Length = 1265

 Score =  298 bits (763), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 97/764 (12%), Positives = 239/764 (31%), Gaps = 64/764 (8%)

Query: 85   FTWNIDAHGYLKEISEELPKTIGNYAF--KMIGMR-----LCDVSDILHIDP-NNHIGDL 136
            F W + A G     S+ + + +G      + +G       +  V            I   
Sbjct: 522  FLWRLSASGEPVFFSKRMVEYLGLDVGGYENVGGNGLTAAIAAVVHPDDAATLEAAINHS 581

Query: 137  LKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRAL 196
            +    ++     L   +G  ++  +   A P+          + +G+ H           
Sbjct: 582  VTTGESFSLNYRLRRADG--VFRWMSGRAEPMRDECGTVV--QWYGLSHDIDDQVRAEEA 637

Query: 197  GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ--------SPPPHLRMKNKVSSLTEYYA 248
             ++ +++   + +    +         I            SPP H+   + ++    +  
Sbjct: 638  LRKANRQLEQMIDAVPVNLLSFAPSGRITYTSKRYLEKVGSPPTHINDFDALARDLAH-P 696

Query: 249  HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY----LS 304
                 +         S +     +      +      +     L++      ++    + 
Sbjct: 697  EDFPTMFRRASNGFASGQP-FVNRFRRREKDGVYRWIEARAQPLRDTDGAIVQWYMASID 755

Query: 305  HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIA 363
              +         E E    + VD  P+  + ++  G L Y N   L        +  +  
Sbjct: 756  IEDEMRAQEALRERERELQQLVDALPVHIWSWTPDGKLAYVNRRSLEELGISGANFEDFT 815

Query: 364  GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
                 L+      +        L   D    +   R    +W   +   +        ++
Sbjct: 816  RVARDLIHPEDALEVLNRSASCLKTGD----SFIMRYRR-RWKDGSYRWIEGRCEPLRDR 870

Query: 424  FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
                +    +  +  +    +  +      L  ++E     I      G  +  +R + +
Sbjct: 871  DGAIVHWYQVSIDIDEEMRAQVALRERERSLWQLVETLPVMIDCAAPNGEPIYRSRQLRE 930

Query: 484  LFGYPVEDILRK-------PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
              GY +E +  K            +  +  + +       L+        +       + 
Sbjct: 931  FLGYELELLDGKGKSRLSGTLDEGVHPDDLAAVKANYAHSLATGEP--YARRHRLRRFDG 988

Query: 537  KLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKS--DFLA 590
            +   +      +  +    +       DI    + + +L  A++   + S   S  +  A
Sbjct: 989  EYCWVDTRAAPMRNAEGAIVQWNVVCLDIDGEVRAQEELRLAQERLARASQAASLAELSA 1048

Query: 591  RVSHEIRTPLTAIIGFSEVIKNQRFGPLGN-PRYIEYANYIDRSGNLVLDIVNDLLDISK 649
             ++HE+  PL A++  S   +        N  R  +    I R  N   D+V+ +  + K
Sbjct: 1049 SIAHEVNQPLAAVVANSYACQRWLTAEPPNIERAQKTVERIIRDANSAADVVSRIRALFK 1108

Query: 650  IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709
              +  M       +LD  ++EA  L+   A  +R+ +     +++P +  D   ++Q+ +
Sbjct: 1109 QSADAMAY----TALDSVIAEARDLIAEEAVRRRVRLDLDVESDLPIVALDRVQIQQVLV 1164

Query: 710  NILSNAIHFTP--SGGQIIISTTHTSNEEVILRVRDTGVGMT-NYELEKAMKPFGQIPNS 766
            N++ N I       G +++        + + + + D G G+       +  +PF      
Sbjct: 1165 NLIRNGIEAMDSVPGDKVLGLRVRRIGDAIQIEISDCGPGIAFPD---RIFEPFFTTKEH 1221

Query: 767  QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
                  G G+GL + +++V+++ G+ ++      GT      P+
Sbjct: 1222 ------GMGMGLAICRSIVESHGGRLWVEKNDPHGTAFVFTMPV 1259



 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 43/527 (8%), Positives = 120/527 (22%), Gaps = 42/527 (7%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMI---GMRLCDVSDILHIDPNNH------IGDLLK 138
            +   G     +  L    G      +   GM     +    + P +       +   L 
Sbjct: 391 RLTPEGEPTFFNRRLLDFFGLDGVADLDKPGMSRQAAAIQSLVYPEDAARLLETVRHSLA 450

Query: 139 RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
               +  K  +   +G   Y  +D    P+   +      + + I      +   +   +
Sbjct: 451 TGEPYSMKYRMRRADG--AYRWVDGRGEPLRDHSGAIV--QWYVISIDVDDEMRAQEALR 506

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYD----------IFSQQSPPPHLRMKNKVSSLTEYYA 248
             +++ S L ++            +                        N +++      
Sbjct: 507 ERERELSQLVDMVPSFLWRLSASGEPVFFSKRMVEYLGLDVGGYENVGGNGLTAAIAAVV 566

Query: 249 HKDDVLKTEKY-PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
           H DD    E       +   S          +            +++      ++    +
Sbjct: 567 HPDDAATLEAAINHSVTTGESFSLNYRLRRADGVFRWMSGRAEPMRDECGTVVQWYGLSH 626

Query: 308 HP----SLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEI 362
                        +      + +D  P+    ++  G + Y +  +L             
Sbjct: 627 DIDDQVRAEEALRKANRQLEQMIDAVPVNLLSFAPSGRITYTSKRYLEKVGSPPT----H 682

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
                 L       ++             +      R    + +      +        +
Sbjct: 683 INDFDALARDLAHPEDFPTMFRRASNGFASGQPFVNRFRRREKDG-VYRWIEARAQPLRD 741

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
                +       +  D    +  +     +L  +++A    I     +G +   NR   
Sbjct: 742 TDGAIVQWYMASIDIEDEMRAQEALRERERELQQLVDALPVHIWSWTPDGKLAYVNRRSL 801

Query: 483 KLFGYPVE--DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
           +  G      +   +     +       + +     L       +        K+     
Sbjct: 802 EELGISGANFEDFTRVARDLIHPEDALEVLNRSASCLKTGDSFIMR--YRRRWKDGSYRW 859

Query: 541 LRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESS 583
           +    + L       +       DI E  + +  L   ++   +   
Sbjct: 860 IEGRCEPLRDRDGAIVHWYQVSIDIDEEMRAQVALRERERSLWQLVE 906



 Score =  116 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 55/527 (10%), Positives = 125/527 (23%), Gaps = 49/527 (9%)

Query: 87  WNIDAHGYLKEISEELPKTIGNY------AFKMIGMRLCDVSDILHIDPNNHIGDL-LKR 139
           W  DA G    ++      +G        + +        +      D         L+ 
Sbjct: 30  WATDAAGRFSYVTPSTLSLLGTTLEEFNTSSEDGSAGWKRLIHPDDYDRAVAEWRRCLQT 89

Query: 140 QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199
              +  +  +    G   Y     +  P+         + G  I       + P A  +R
Sbjct: 90  GEHYNVEHRILRASG--AYGWSRSSGQPLCDSEGNAVAWYGTLI-----EGDAPPAATER 142

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
                S   E +    ++          ++   H   +   + + +              
Sbjct: 143 FADVMSEALEKEAASDALHSLSLVHPDDRTAAAHAAARAFWTGVPQV------------- 189

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
               +    L     +                + +   +          P +    D G 
Sbjct: 190 ----TRHRQLQTDGSYRWNETRSEPGYSVSVDIDDLVTDRERLSGTDLDPLVE--NDAGP 243

Query: 320 NLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
             + + V+      + +   G   Y +P  L        D         T        D+
Sbjct: 244 IRSAKIVESIFGNGWAFDAAGRWIYMHPFALSSLGVTLEDLNAPLNEGYTAWKRLLHPDD 303

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
                V      RT    +      +      +          +         GI  ++ 
Sbjct: 304 YEQIAVTWRHCLRTGDHFNVE-FRFRRANGTYVWARTAARPARDSQGRITGWYGIALDND 362

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP-- 496
             +    ++     +L  +++     I  +  EG     NR +   FG      L KP  
Sbjct: 363 VYKKTVAELRGRERELSQLIDMVPVQIRRLTPEGEPTFFNRRLLDFFGLDGVADLDKPGM 422

Query: 497 ------FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
                     +     + +   +   L+                +     +    + L  
Sbjct: 423 SRQAAAIQSLVYPEDAARLLETVRHSLATGEP--YSMKYRMRRADGAYRWVDGRGEPLRD 480

Query: 551 SSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
            S     + +   D+ +  + +  L   ++   +       FL R+S
Sbjct: 481 HSGAIVQWYVISIDVDDEMRAQEALRERERELSQLVDMVPSFLWRLS 527


>gi|258514826|ref|YP_003191048.1| histidine kinase [Desulfotomaculum acetoxidans DSM 771]
 gi|257778531|gb|ACV62425.1| histidine kinase [Desulfotomaculum acetoxidans DSM 771]
          Length = 531

 Score =  298 bits (763), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 88/333 (26%), Positives = 158/333 (47%), Gaps = 7/333 (2%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL-- 541
           + G     +L       L +    +    +  I+S       + +         +  +  
Sbjct: 198 MLGLAAVRLL---LKKELNRQDFHLFLALIIGIMSDATFTLYDSVYDTYNLLGHIYLVAS 254

Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
            + I K        +    IS  K ++  L+   +  ++    K +FLA  SHE+R+PLT
Sbjct: 255 FVFIFKALTEEAVGMLYEAISTLKSQREMLAETNRQLQETDRIKDEFLANTSHELRSPLT 314

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           A+I F+E++ ++  G L N    +Y + I+ SG  +L ++N  LD+SKI +GK  L+ E 
Sbjct: 315 AVIAFTELLMDESSGEL-NDLQRDYVHEINDSGRELLGMINGFLDLSKIAAGKTFLYREH 373

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
             +DE + +    ++   N K I +  +   N   + AD     Q+  N+LSNA+ FT +
Sbjct: 374 FKIDELIEDIFLRMRHLFNNKGITLEVARNKNQLPVWADRGKTGQVLTNLLSNALKFTTT 433

Query: 722 GGQIIISTTHTSNE-EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
           GG++++ +    +  +VI+ VRDTG+G+   + EK  +PF Q+  +      G G+GL L
Sbjct: 434 GGKVVVESNSGDSGRDVIITVRDTGIGIDIRDQEKIFQPFYQVDGTSTRNYGGMGIGLNL 493

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
           AK +V+ + G   + S    G++     P  +T
Sbjct: 494 AKKLVELHGGTIRVSSQQNAGSIFTFTLPTEET 526


>gi|300172611|ref|YP_003771776.1| two-component sensor kinase [Leuconostoc gasicomitatum LMG 18811]
 gi|299886989|emb|CBL90957.1| Two-component sensor kinase yycG [Leuconostoc gasicomitatum LMG
           18811]
          Length = 623

 Score =  298 bits (763), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 81/462 (17%), Positives = 171/462 (37%), Gaps = 36/462 (7%)

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA-SARLHTIQWNRENSLAMTF 415
           +        +  L     L        + L+ +             T +    +   +  
Sbjct: 172 LPVYRNVNSVMRLFVIASLVALFVSIALALFLARTLTRPIAQIDEQTTKIAGGDYSMVNH 231

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
                +++              V+          E  +L S+L   +DG+   NR G I 
Sbjct: 232 --IYGSDELGHLAQSVNELSTRVEESTETVNA--ERNRLDSVLTHMADGVLAANRRGEIT 287

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
             N+A +   G   E  + +     L       +   L  +    +  + +   +     
Sbjct: 288 IINQAAANFVGVDREAAIGQNVIDLLRLQGKRTLRDMLENLDDFRVDLSDDSTDILLQA- 346

Query: 536 EKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
                + +I ++  F S   + +H+I+E ++  ++                 F++ VSHE
Sbjct: 347 ----YVSLIKRQSGFISGLVVVLHNITEQQRIDSERRM--------------FVSNVSHE 388

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           +RTPLT++  + + +               +   +      ++ ++NDLL +S+++ G M
Sbjct: 389 LRTPLTSVRSYVDALAEGAID--DPEMAQNFLGVVQDETQRMIRMINDLLALSRLDQGTM 446

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANE---------KRILIRTSFANNIPRILADLRSVKQ 706
           ++  E V+L+   +  ++   +             K   I+  F N    +  D     Q
Sbjct: 447 DVRLEVVNLNSLFNFVLNRFDMIIESDAKNTDTPNKNYNIQREFTNEDVWVEVDPDKFTQ 506

Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
           +  NI++NA+ ++P GG I       +    IL + D G+G+   +L+     F ++  S
Sbjct: 507 VLDNIMNNAVKYSPDGGTITARL-IKTKTRAILSISDQGLGIPRKDLDSIFNRFFRVDKS 565

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           +     GTGLGL ++K +V+   G+ ++ S   +G+   I  
Sbjct: 566 RSRAQGGTGLGLAISKEVVERFNGRIWVDSVENRGSTFYISL 607


>gi|332141097|ref|YP_004426835.1| putative sensor protein [Alteromonas macleodii str. 'Deep ecotype']
 gi|327551119|gb|AEA97837.1| putative sensor protein [Alteromonas macleodii str. 'Deep ecotype']
          Length = 1236

 Score =  298 bits (763), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 92/390 (23%), Positives = 167/390 (42%), Gaps = 36/390 (9%)

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           +I+  + D I  ++  G + S N A   LFG P + I+ + F+   +  +P  +   LT 
Sbjct: 368 AIVAISKDAIFSVDAFGKVKSWNMAAESLFGIPSQVIINQHFSS-FKPLSPLGLETVLT- 425

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKN---- 569
                 ++T     +   K E  L +         S     ++ + D+++  + K+    
Sbjct: 426 --KGGKQETFTTPYIDGEKNEHKLLITASTIWGDNSQFSGVAVVIRDVTDEHKAKDAIER 483

Query: 570 --------------KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
                         +L  A + A K SS KS F++ +SHE+RTPL  ++G   ++K Q  
Sbjct: 484 VNFKLEEKVVSRTKELMKATEEARKASSVKSSFISNISHEMRTPLNGVVGSLSLLKRQPL 543

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
               N +  +  + ++ S N +  ++ND+LD+SKIE+GK++++ +       +     + 
Sbjct: 544 ----NDKAEQLVSMMEISCNNLSVLINDVLDLSKIEAGKLDINHQLFEPLTLIESLAKVF 599

Query: 676 QLYANEKRILIRTSFANNIPRILA--DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
            + A  K + +       +PR+    D   + Q+  N+L+NAI FT  G  I ++     
Sbjct: 600 AVKAATKGLELIVD-TTGLPRVEINSDRHRLNQVLSNLLNNAIKFTEKG-HIQLNAALYE 657

Query: 734 NE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
           N+    ++   V DTGVG+      K    F Q   S   +  GTGLGL + K +     
Sbjct: 658 NDAGLQQLHFSVSDTGVGIAPESQPKLFTAFTQADASVATQYGGTGLGLSICKQLTQLLG 717

Query: 790 GKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819
           G     S    G+       L + +   + 
Sbjct: 718 GDITFKSVVDVGSTFSFYVTLTEKTPDTEA 747


>gi|255013301|ref|ZP_05285427.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_7]
          Length = 423

 Score =  298 bits (763), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 101/386 (26%), Positives = 178/386 (46%), Gaps = 33/386 (8%)

Query: 446 KMEIEVMQ---------LCSILEATSDGIAIINR-EG-IILSTNRAVSKLFGYPVEDILR 494
           ++E+   Q         + +IL      I + +   G   +  N+A  +  G   EDI+ 
Sbjct: 36  ELEMRQSQHTINFLNILMDTILSNVFVEITVKDIFNGFRYIYFNKAAEEFTGVKAEDIIG 95

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK-----LLSLRIIIKKLP 549
           K        ++         +  ++   + ++K+        +     ++ L I      
Sbjct: 96  KTDFELF-PDSRRAHEIRTEDYHTIKTGRMVKKMVEYEKPNGEVRIVNIVRLLITNPDPG 154

Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
            S    + ++DI+E +Q++  L   +    +    K+ F+A +SHEIRTPL AI+GF+ +
Sbjct: 155 ASPLLLVMLNDITEQRQDQLALMKVQ----EADKMKNAFIANMSHEIRTPLNAIVGFAHL 210

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           +              EY + I+++ +L+L ++ND+LD+SKIESG++N +   V L +   
Sbjct: 211 VTETTNAS----EQREYFSIINKNCDLLLKLINDILDLSKIESGRLNYNVSEVELRDICQ 266

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
           EA  +  L       L+  S A    R+  D   V+Q+ LN+LSNAI FT  G    IS 
Sbjct: 267 EAYVVQSLKMTSDVALLYNSVAMPSVRLWIDPHRVEQVLLNLLSNAIKFTSKG---FISL 323

Query: 730 THT-SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
            +   +  V + V DTG+G++  +LE   + F ++ +      +G GLGLP+ K +V+  
Sbjct: 324 FYEVEDMFVRVSVMDTGIGISEEKLESVFERFVKLDDF----YQGAGLGLPICKMIVEQL 379

Query: 789 MGKFYIFSTPAKGTLIEIIFPLYDTS 814
            G+  + S   KG+      PL  T 
Sbjct: 380 GGEIGVRSELGKGSTFWFTLPLVVTD 405


>gi|19745651|ref|NP_606787.1| two-component sensor histidine kinase [Streptococcus pyogenes
           MGAS8232]
 gi|19747782|gb|AAL97286.1| two-component sensor histidine kinase [Streptococcus pyogenes
           MGAS8232]
          Length = 450

 Score =  298 bits (763), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 90/406 (22%), Positives = 166/406 (40%), Gaps = 36/406 (8%)

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDT-RINKRKMEIEVMQLCSILEATSDGIAIINREG 472
            +          E M  +    +  D  R+    +  E  +L SIL   SDG+   +R G
Sbjct: 55  RYTDIIDEKADIELMELSDQLNDLSDVFRLTHENLAQEKNRLASILAYMSDGVLATDRSG 114

Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
            I+  N    K      E+ L+K  T  LE +T       +         +T        
Sbjct: 115 KIIMINETARKQLNLSKEEALKKNITDLLEGDTSYTYRDLV--------SKTPVVTVNSR 166

Query: 533 TKEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
               + +SLR+        S +     + +HD +E ++E+ +                 F
Sbjct: 167 NDMGEFVSLRLRFALNRRESGFISGLVVVLHDTTEQEKEERERRL--------------F 212

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
           ++ VSHE+RTPLT++  + E +     G L       +        N ++ +++DLL++S
Sbjct: 213 VSNVSHELRTPLTSVKSYLEAL---DEGALKEDIAPSFIKVSLDETNRMMRMISDLLNLS 269

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR-----ILIRTSFANNIPRILADLRS 703
           +I++    L  E  +    ++  ++   L  N+         I   +      +  D   
Sbjct: 270 RIDNQVTQLAVEMTNFTAFITSILNRFDLVKNQHTGTGKVYEIVRDYPITSVWLEIDNDK 329

Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
           + Q+  NIL+NAI ++P GG+I +    T   ++I+ + D G+G+   +L      F ++
Sbjct: 330 MTQVIENILNNAIKYSPDGGKITVRMKTTDT-QLIISISDQGLGIPKTDLPLIFDRFYRV 388

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             ++     GTGLGL +AK ++  + G  +  S   KG+   I+ P
Sbjct: 389 DKARSRAQGGTGLGLAIAKEIIKQHHGFIWAKSDYGKGSTFTIVLP 434


>gi|167464056|ref|ZP_02329145.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           larvae subsp. larvae BRL-230010]
 gi|322384577|ref|ZP_08058257.1| two-component sensor histidine kinase-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321150632|gb|EFX44109.1| two-component sensor histidine kinase-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 586

 Score =  298 bits (763), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 107/508 (21%), Positives = 203/508 (39%), Gaps = 46/508 (9%)

Query: 325 TVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
             D  P     V   G++  +N +   +T +   + +       +L     +S+ N  K 
Sbjct: 86  LFDNHPDTILYVGRCGHISSSNANIQSMTGFTPPEIL-------SLSLQSIVSNANWDKV 138

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENS-LAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
              ++     +           +       +T++P        E +    I     + + 
Sbjct: 139 TKRFQLALNGVPQHFTCMINHKDGSCIDTKVTYVPSVV---NGEIVGVYAILKNVTEVKR 195

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            K++++    Q   IL + S+GI   N EG  +  N A  ++ G+  E+ + +P    L 
Sbjct: 196 QKKEIDHLNRQNRLILNSVSEGIYGTNMEGKAIFWNSAAEQMTGWTAEEAIGQPIRHLLA 255

Query: 503 QN-----TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---- 553
                  +P   N +L + L        EK T    K+     +  +   +         
Sbjct: 256 SPGKNIFSPMGENTFLDKTLMDGKVH-HEKHTYFCHKDGSRFPVEYVSSPIFQEEGEQIG 314

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
             +T  D++E K+ +  L           S      A V+HEIR PLT++ GF ++IK  
Sbjct: 315 AVITFRDMTEQKRTEELL-----RKSDMLSAVGQLAAGVAHEIRNPLTSLKGFLQLIK-- 367

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
                G   Y  Y   +      +  IV++ L ++K +  +  L     S+   VS  + 
Sbjct: 368 --PSTGKENY--YMEIMQDELKRIEHIVDEFLFVAKPKVSQFELK----SMSAIVSSTVD 419

Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-T 732
           L+Q  A    + IRT+  + +P +  +   +KQ+ +NI+ NA+     GG + I T + +
Sbjct: 420 LLQPQARLNNVEIRTNLNSRLPLVYCNQHQMKQVFINIIKNAMEAMIDGGILHIETDYIS 479

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
           + + V +R  D G G+    + K  +PF         + +GTGLGL +   +++ + G  
Sbjct: 480 ALQMVRIRFNDEGCGIPPERIPKLAEPFY------STKEKGTGLGLMVTYKIIETHSGDI 533

Query: 793 YIFSTPAKGTLIEIIFPL--YDTSHPHD 818
              S P +GT ++I+ P   ++  +  D
Sbjct: 534 QFRSRPDRGTTVDILLPASRHEDENAED 561



 Score = 51.2 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/148 (12%), Positives = 51/148 (34%), Gaps = 6/148 (4%)

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
           +  +  +  S+ +   D I  + R G I S+N  +  + G+   +IL       +     
Sbjct: 76  LSKKSQEYKSLFDNHPDTILYVGRCGHISSSNANIQSMTGFTPPEILSLSLQSIVSNANW 135

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISE 563
             +       L+           + + K+   +  ++       +         + +++E
Sbjct: 136 DKVTKRFQLALNG---VPQHFTCMINHKDGSCIDTKVTYVPSVVNGEIVGVYAILKNVTE 192

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLAR 591
            K++K ++ H  +      +  S+ +  
Sbjct: 193 VKRQKKEIDHLNRQNRLILNSVSEGIYG 220



 Score = 51.2 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/123 (13%), Positives = 37/123 (30%), Gaps = 11/123 (8%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD-------LLK 138
            +  +  G     +    +  G  A + IG  +  +      +  + +G+       L+ 
Sbjct: 218 IYGTNMEGKAIFWNSAAEQMTGWTAEEAIGQPIRHLLASPGKNIFSPMGENTFLDKTLMD 277

Query: 139 RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
            +      T     +G+    P++  + PI+    E  G                  L +
Sbjct: 278 GKVHHEKHTYFCHKDGS--RFPVEYVSSPIFQEEGEQIGA--VITFRDMTEQKRTEELLR 333

Query: 199 RLD 201
           + D
Sbjct: 334 KSD 336


>gi|116251150|ref|YP_766988.1| two-component sensor histidine kinase transcriptional regulatory
           protein [Rhizobium leguminosarum bv. viciae 3841]
 gi|115255798|emb|CAK06879.1| putative two-component sensor histidine kinase transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 526

 Score =  298 bits (763), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 110/446 (24%), Positives = 190/446 (42%), Gaps = 11/446 (2%)

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
           L      +    + + + R      +A+     I  +   S A+                
Sbjct: 36  LSRTGGGEAVRQRELAILRRLVLLSSAALVAAPIGLSAVTSPAVALPAGVAMVCAAFLFS 95

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
             G               +         L AT   +  ++  G + +      + F   +
Sbjct: 96  AVGSIALARQGSSAGIATQSAEDFY---LAATPGLVFFLDPHGSVATVGGRDRRDFLAWM 152

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS---TKEEKLLSLRIIIK 546
            D   + F   +  +   +    L  +   +  Q+++           + +   LR+ + 
Sbjct: 153 RDPKGRGFLEQVHVSDRILFLQALDGLRRGEDAQSVDLRLDRPSVSRDQRQFAYLRMDMT 212

Query: 547 KLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
               +          + D+S  +Q +++  +    AE  +  KS FLA VSHE+RTPL A
Sbjct: 213 ARRDADGELAAIIAQLRDVSVEQQLRDEAQNRAADAESANDAKSRFLAAVSHELRTPLNA 272

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           I+GFS+++  + FG   N R  EY   +  SG  +L +VN +LD+SKIE+G+  L  E  
Sbjct: 273 ILGFSDILIGEYFGKFENDRQREYVGLVRESGAHLLSVVNTMLDMSKIEAGRYELILEAF 332

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
            +  +V    S++ L A  K + + +     +  ++AD R+++QI +N++ NAI FT +G
Sbjct: 333 DISSSVKSCESMLALQAKTKGLTLTSRIQRGLGEVVADQRAIQQILINLVGNAIKFTEAG 392

Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
           G + +         + L V DTG+G+   +L    +PF QI N    R EG+GLGL L K
Sbjct: 393 GVVSVDAAARD-GILKLTVSDTGIGIPADKLALLGQPFVQIQNDYTRRFEGSGLGLSLVK 451

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIF 808
            +V  + G F I S P +GT+I I  
Sbjct: 452 GLVALHGGYFAIASQPGEGTIITIEI 477


>gi|83765604|dbj|BAE55747.1| unnamed protein product [Aspergillus oryzae]
          Length = 1937

 Score =  298 bits (763), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 105/671 (15%), Positives = 212/671 (31%), Gaps = 90/671 (13%)

Query: 217  VEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS-------L 269
             E   +                ++  L +   H  + L   +    TS  +S       L
Sbjct: 798  GESPGFPTKLGADAVDSYFNVQQLKGLRDALTHHRNRLSKPRQNATTSTPTSPGRLLGKL 857

Query: 270  PEQEDF---HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
            P  ED          Q +  Q F      S           +   +    E      +TV
Sbjct: 858  PTDEDGTTAQDPTAAQASPSQEFRAPPVISPTQSSSRHPSANSFYAQLPRELPRPFTDTV 917

Query: 327  DKC-----PIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
             +      P+  F+     G + + N  F    + +  +        +           +
Sbjct: 918  AQLMLNSVPLHIFLAKPQSGEVIWTNSKFDAYRRSQPQEQKLRDPWQN----IHSSEREH 973

Query: 380  AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
              +         +      R+     +        F      +   E +   G   +  +
Sbjct: 974  VSQEWANALRTGSQFTERVRVKRF-NDESAYRWFIFRANPLLSSTGEVLYWIGSFLDIHE 1032

Query: 440  TRINKRKMEIEVMQL------CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
              I + K   E  +        +   +    +        ++  N       G  +E+ L
Sbjct: 1033 QHIAELKAAQEREKFAIDAKYRAFSNSIPQIVFEATEFRGLIFVNEQWHLYTGQKLEEAL 1092

Query: 494  RKPFTVFLEQNTPSV--------------------------------MNHYLTEILSLDL 521
               F   L  +                                    +   L E++   +
Sbjct: 1093 NFGFAKHLHPDDLEKCGVLSVYLSESQKENTVSGLDTTLQERHLANGVTPALEELVRRGV 1152

Query: 522  RQT---------LEKITLGSTKEEKLLSLRIIIKKLP------FSSCYSLTMHDISEWKQ 566
                                +K        + + ++         + +  T  DI++ K 
Sbjct: 1153 ASVQKDENGRVFYSTEIRLRSKGADFRWHLVRLVRVETSSFGSGEASWYGTCTDINDRKN 1212

Query: 567  EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
             + +L+ A +    +   K+ F + +SHEIRTPL  I+G    I +              
Sbjct: 1213 LERELNKAMQQLNNQMESKTKFFSNMSHEIRTPLNGILGTIPFILDTHLDT----DQRRM 1268

Query: 627  ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
             + I  S   + ++V+++LD+S++E+GKM+L      +   + + I  V   A +K + I
Sbjct: 1269 LDTIQNSSTNLRELVDNILDVSRVEAGKMSLVNSWFHVRSVIEDVIDTVSSRAIDKGLEI 1328

Query: 687  RTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE--------- 736
                  ++P  ++ D   ++Q+ +N++ NA+ FT  G +I I  +               
Sbjct: 1329 NYLMDVDVPPMVIGDRFRIRQVLINLVGNAVKFTSQG-EIHIRCSINHGTATLSKETELL 1387

Query: 737  VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
            +   V DTG G +  + E+ M+ F Q+  +   +  G+GLGL L+K +V+ + G+    S
Sbjct: 1388 LNFDVVDTGKGFSARDAERLMQRFSQLGQNGSQQHAGSGLGLFLSKQLVEMHGGRLTPSS 1447

Query: 797  TPAKGTLIEII 807
               +G      
Sbjct: 1448 KEGQGAKFSFY 1458


>gi|37520287|ref|NP_923664.1| two-component hybrid sensor and regulator [Gloeobacter violaceus
           PCC 7421]
 gi|35211280|dbj|BAC88659.1| two-component hybrid sensor and regulator [Gloeobacter violaceus
           PCC 7421]
          Length = 856

 Score =  298 bits (763), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 112/703 (15%), Positives = 229/703 (32%), Gaps = 99/703 (14%)

Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD 252
                         L       S  +    +              + +  L     H   
Sbjct: 21  ALEKTLLSGGYDLALRWAAGTASLHQALMSERPEMILAADGPGEIDALLLLRSLTVHNCC 80

Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
            L         S             + +    +  +    +  +  +   L         
Sbjct: 81  ELPLVWIGDAPSTPEGGYLNGADLHLLVLTVERALHQAQQRRETGVARAALRRSEQRLDL 140

Query: 313 AYFD----------EGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEI 362
            +            +       TVDK     +V++H  L   N + L   +      +  
Sbjct: 141 FFSQSLDGFFFMMLDRPVRWDATVDKERTLDYVFAHQRLTRVNDALLAQYRASGEQLLGR 200

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
                         D    + +     DR  +         +    + + +        +
Sbjct: 201 TPA------DLFAHDLELGRRLWREFFDRGKLHVETDE---RRFDGSPMWVEGDYSCLYD 251

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEV-----------------MQLCSILEATSDGI 465
           +        GI+ +    ++ +  +                      Q+ S LE+     
Sbjct: 252 EQGRITGHFGIQRDVTVRKLAQEALRTSEAALQEQLQRTLLLQRICEQIRSSLESRQIFQ 311

Query: 466 AIINREGIILSTN---------------RAVSKLF--GYPVED-----ILRKPFTVFLEQ 503
           A +++ G  L  N                  ++    GYP        +   P    + +
Sbjct: 312 ATVDQVGQALGVNCVRILVYSPTPKPELHFAAEYLEAGYPPVHHGSVPVAGDPHAQRVLE 371

Query: 504 NTP----------SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553
                          +        S+ L+  L   T    K   +++++   +   ++  
Sbjct: 372 CDRAVCSPDVYADPQLAPVHELCRSVGLKSLLAVRTSYQGKPNGVITVQQRDRFRRWTPE 431

Query: 554 YSLTMHDIS--------EWKQEKNKLSHAKKIAEK-------------ESSHKSDFLARV 592
               +  ++        + K  + + + +  +AE+              S  K++FLA +
Sbjct: 432 EIALLEAVAAQVGIALNQAKLLEQEKAQSLLLAEQNAALARARQAAEAASRTKNEFLATM 491

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHEIRTP+  +IG ++V+           R  +    I  SG  +L I+ND+LD SK ES
Sbjct: 492 SHEIRTPMNGVIGLADVLLADGGLTH---RQRDSIETIRASGETLLTIINDILDFSKAES 548

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNI 711
           G + L  +   L   ++  + L++  A +K + +  +    +P+ ++ D   ++QI +N+
Sbjct: 549 GCIELETKRFDLHALLAGCVDLLRPEATQKHLQLCCTLHGQVPQAVVGDAARLRQILVNL 608

Query: 712 LSNAIHFTPSGGQ-IIISTTHTSNE-----EVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           + NA+ FT SG   + ++    + E     E+   VRDTG+G+    +++  KPF Q+  
Sbjct: 609 IGNAVKFTTSGAVSVNVTAARPAAEPPQKWELHFAVRDTGIGIPAERMDRLFKPFSQVDA 668

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           S   R  GTGLGL + K + +   G+ ++ S P +G+      
Sbjct: 669 STTRRYGGTGLGLAICKRLAELMDGRIWVESEPGRGSTFSFTI 711



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/409 (10%), Positives = 98/409 (23%), Gaps = 30/409 (7%)

Query: 72  NTFVFDPIPRTVRFTWNID---------AHGYLKEISEELPKTIGNYAFKMIGMRLCDVS 122
           + F F  + R VR+   +D         AH  L  +++ L         +++G    D+ 
Sbjct: 147 DGFFFMMLDRPVRWDATVDKERTLDYVFAHQRLTRVNDALLAQYRASGEQLLGRTPADLF 206

Query: 123 DILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFG 182
               ++    +      +   + +T     +G+ ++V  D + L  Y      +G   FG
Sbjct: 207 AH-DLELGRRLWREFFDRGKLHVETDERRFDGSPMWVEGDYSCL--YDEQGRITGH--FG 261

Query: 183 IVHVNRVDNDPRALGKRLD-KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS 241
           I     V    +   +  +      L          E+ +  + S+Q     +    +  
Sbjct: 262 IQRDVTVRKLAQEALRTSEAALQEQLQRTLLLQRICEQIRSSLESRQIFQATVDQVGQAL 321

Query: 242 SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301
            +              +         +        ++ +      Q              
Sbjct: 322 GVNCVRILVYSPTPKPELHFAAEYLEAGYPPVHHGSVPVAGDPHAQRVLECDRAVCSPDV 381

Query: 302 YLSHRNHPSLSAYFDEGENLTPET---VDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSV 357
           Y   +  P        G              P     V                   + +
Sbjct: 382 YADPQLAPVHELCRSVGLKSLLAVRTSYQGKPNGVITVQQRDRF--------RRWTPEEI 433

Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
             +E       +               +L       +A + +        +N    T   
Sbjct: 434 ALLEAVAAQVGIALNQAKLLEQEKAQSLLLAEQNAALARARQAAEAASRTKNEFLATMSH 493

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINK---RKMEIEVMQLCSILEATSD 463
             +          + +  +   T   +     +      L +I+    D
Sbjct: 494 EIRTPMNGVIGLADVLLADGGLTHRQRDSIETIRASGETLLTIINDILD 542


>gi|218529705|ref|YP_002420521.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium
           chloromethanicum CM4]
 gi|218522008|gb|ACK82593.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium
           chloromethanicum CM4]
          Length = 1103

 Score =  298 bits (763), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 108/781 (13%), Positives = 205/781 (26%), Gaps = 85/781 (10%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI-------GDLLKRQNT 142
           DA G +   +    +  G     +      D       +    +          L    T
Sbjct: 202 DAEGRIVHDNTANREIWGMPPQTVNWESYGD-WVGYWPETGERLRAEEWGMARALLHGET 260

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
             G+                  A PI  R     G  G           +     +  + 
Sbjct: 261 VRGELVEIERFDGGGRRLFLNNAAPIRDRAGAIVG--GVVAELDVTERIEVERRLRESEA 318

Query: 203 KFSHLHE----IKKGHSSVEKEKYDIFSQQSP------------PPHLRMKNKVSSLTEY 246
                 E         + V    +D+ S +              P   R    ++ + E 
Sbjct: 319 LARVNAERVQLALSAGAIVGTWFWDLPSDRFTVDEGFARAFGLDPALGREGLSLAQVVET 378

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
               D     +      +   +   Q      +   Y  +               +    
Sbjct: 379 VHSDDKAGLAKAIGEAIARGGAYAHQYRVRRADGRYYWIEANGRVDHAPDGTPLSFPGVL 438

Query: 307 NHPSLSAYFDEGENLTPETV-----------DKCPIPFFVYSHGNLFYA-NPSFLLLTKY 354
                        +     +           D  P   ++       Y  N  +   T  
Sbjct: 439 IDVEERRAVAAERDRATALLREKAVEFETLADNIPALCWMARADGHIYWYNRRWYDYTG- 497

Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
              + ++  G  +        +     +      +       +     ++          
Sbjct: 498 TDAESMQGWGWKA---VHDPAALPGVSERWQHSIATGERFDMT---FPLRGRDGTFRPFL 551

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC-----------SILEATSD 463
                  ++    +   G   +  D R  +  +      L             I +A+SD
Sbjct: 552 TRIVPIRDETGTVVRWFGTNTDITDLRAVQDALHRLNETLEEQVAARTAERDQIWQASSD 611

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
            +A+ + EG  +S N A S   G+   ++   PF  F+      +       +   +++ 
Sbjct: 612 LLAVADFEGRFVSLNPAWSATLGWSEAELKAVPFLDFVHPEDRELTLAAAASLARGEMQL 671

Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK--QEKNKLSHAKKIAEKE 581
             E        + +  S       +P       ++ D++  K        +       ++
Sbjct: 672 GFENRYRTRDGDYRWFSWNT----VPRQGLIYASVRDVTAIKGQARALAEAEEALRQSQK 727

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
                     ++H+    L  I G  E +   R           Y      +      + 
Sbjct: 728 MEAVGQLTGGLAHDFNNLLAGISGSLE-LMQTRISQGRLKDVDRYMGAAQGAAKRAAALT 786

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701
           + LL  S+    +  L   P  ++  V     L++       I I    A  +   L D 
Sbjct: 787 HRLLAFSR----RQTLDPRPTDVNRLVMGMEDLIR-RTVGPTITIEVVGAAGLWPSLVDP 841

Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTT-------------HTSNEEVILRVRDTGVGM 748
             ++   LN+  NA    P GG+I I T                  + + L V DTG GM
Sbjct: 842 PQLENALLNLCINARDAMPEGGRITIETANKWLDAHAAHRHDVPPGQYLSLCVTDTGTGM 901

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           +     KA  PF     +    G+GTGLGL +         G+  I+S   +GT + I  
Sbjct: 902 SPDVRAKAFDPFFTTKPT----GQGTGLGLSMIYGFAKQTGGQVRIYSELGQGTTVCIYL 957

Query: 809 P 809
           P
Sbjct: 958 P 958



 Score = 83.9 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 32/314 (10%), Positives = 79/314 (25%), Gaps = 24/314 (7%)

Query: 294 NNSKESFEYLSHRNHP-SLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLL 351
             +          +HP      + E        V   P      +     F+ N ++  L
Sbjct: 23  GEAARMIAERDWSDHPLGPPQTWPESLRTALSLVLNSPESMILAWGPELHFFFNDTYFPL 82

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411
              +    +        +           I         R        L T +   E   
Sbjct: 83  LGPRLPWAMGER--FDRVWADAWDQAKPIIDDA-FAGKSRRFEDLPWTLATDR--GEAQT 137

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDT-------RINKRKMEIEVMQLCSILEATSDG 464
             +F      +             E           R ++  +      L + L+    G
Sbjct: 138 WWSFSYSRVLDGEGRIAGLFVFTNETTKRIRMEALQRESEAALRRSESFLAATLQGLPVG 197

Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL-----EQNTPSVMNHYLTEILSL 519
           + I + EG I+  N A  +++G P + +  + +  ++                +   L  
Sbjct: 198 VIIADAEGRIVHDNTANREIWGMPPQTVNWESYGDWVGYWPETGERLRAEEWGMARALLH 257

Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHAK 575
                 E + +                 +   +       +   D++E  + + +L  + 
Sbjct: 258 GETVRGELVEIERFDGGGRRLFLNNAAPIRDRAGAIVGGVVAELDVTERIEVERRLRES- 316

Query: 576 KIAEKESSHKSDFL 589
           +   + ++ +    
Sbjct: 317 EALARVNAERVQLA 330



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/265 (12%), Positives = 62/265 (23%), Gaps = 23/265 (8%)

Query: 47  DSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTI 106
           D  E+     +   + +       E  F            W   A G++   +       
Sbjct: 440 DVEERRAVAAERDRATALLREKAVE--FETLADNIPA-LCWMARADGHIYWYNRRWYDYT 496

Query: 107 GNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNL-YVPIDLAA 165
           G  A  M G     V D   +   +          T       +P+ G +  + P     
Sbjct: 497 GTDAESMQGWGWKAVHDPAALPGVSERWQ--HSIATGERFDMTFPLRGRDGTFRPFLTRI 554

Query: 166 LPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH-----------EIKKGH 214
           +PI          R FG           +    RL++                 +     
Sbjct: 555 VPIRDETGTVV--RWFGTNTDITDLRAVQDALHRLNETLEEQVAARTAERDQIWQASSDL 612

Query: 215 SSVEKEKYDIFSQQSPP----PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270
            +V   +    S              + K     ++   +D  L       L   E  L 
Sbjct: 613 LAVADFEGRFVSLNPAWSATLGWSEAELKAVPFLDFVHPEDRELTLAAAASLARGEMQLG 672

Query: 271 EQEDFHTINLNQYTKKQYFGTLQNN 295
            +  + T + +           Q  
Sbjct: 673 FENRYRTRDGDYRWFSWNTVPRQGL 697


>gi|94264256|ref|ZP_01288050.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93455301|gb|EAT05508.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 404

 Score =  298 bits (763), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 74/307 (24%), Positives = 139/307 (45%), Gaps = 23/307 (7%)

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH 573
            + L   +  +     +      +   L + + +       +          + +     
Sbjct: 113 QDYLVKGVIGSDSLKRVIRHARGR-FRLEMELMESNRRLGEAAV--------RAEELA-- 161

Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
             + A+  +  KS+FLA +SHEIRTP+  +IG + ++  +      +     YA  I  S
Sbjct: 162 --REAQSANIAKSEFLANMSHEIRTPMNGVIGMASLLLAEDL----SDEQRSYAQIIISS 215

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693
           G  +L+++N +LD SKIE+G++ L   P S  E V E   L+Q  A  + I + +  +  
Sbjct: 216 GQALLELINQILDFSKIEAGRLELDCRPFSPRELVQEVAVLLQPQAAAQNITLTSEVSPG 275

Query: 694 IPRIL-ADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNE----EVILRVRDTGVG 747
           +P ++  D   ++Q+ LN++ NAI FT  GG  + +S            +   V+D+G+G
Sbjct: 276 VPAVVEGDPVRLRQVLLNLVGNAIKFTEIGGVAMELSPAPADPAAPHCSLHFAVKDSGIG 335

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           +   +L+   + F Q+  S   +  GTGLGL + + +++   G+  + S   KG+     
Sbjct: 336 IPAEKLDLLFQRFQQVDGSTCRKYGGTGLGLAICRRLMELMGGEIGVESEEGKGSTFWFT 395

Query: 808 FPLYDTS 814
            PL   +
Sbjct: 396 VPLRPHA 402


>gi|262195164|ref|YP_003266373.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
 gi|262078511|gb|ACY14480.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
          Length = 650

 Score =  298 bits (763), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 104/515 (20%), Positives = 206/515 (40%), Gaps = 49/515 (9%)

Query: 319 ENLTPETVDKCPIPFFVYSHGNL--FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
                   +    P +V+    L   +AN   L + +   +D++      + + +A +  
Sbjct: 6   SQELTAAYELLAHPLWVFDVETLSMVWANQPGLRMWRADDLDELLARDYAADISEAAQRR 65

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
               +            I     L+ ++   +  + +         +           P 
Sbjct: 66  LMGTLH----RCLQGERIRERWTLYPLE---DTPVTVDCGLAAVPLEDGRTALLISGMP- 117

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
                +   ++  E  +    L      ++  +  G ++  N A +  FG          
Sbjct: 118 -----VQASEIAAENQRGLETLRHLPLAVSRFDAGGALVFQNPAAASAFGPED----GPH 168

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556
             +             L E  +  + +T  ++  G    E+   + +   + P +    L
Sbjct: 169 ARLLERFADREHGAAALREARAGAIVRTQTRLRTG--AGERWHDVELRQGRDPVTGKPLL 226

Query: 557 TMH--DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DISE KQ + +L  AK+ AE  +  KS+FLA +SHE+RTPL  IIGF +++ +  
Sbjct: 227 LFMAGDISELKQAEAELRAAKEQAEAAARVKSEFLATISHEMRTPLHGIIGFGDLLAHSH 286

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                +P+   + + +  S  L+  +++D+LD+++IE+G+M+     + L+  ++    +
Sbjct: 287 L----DPQQRGFLDSLRESARLLFRLISDVLDLAQIEAGRMHFEDRAMDLEALIARVRDV 342

Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
           +   A EKR+++       +PR +  D   ++Q+ +N+L NA+ FTP+G ++ +      
Sbjct: 343 IAFQAAEKRLVLEAQLDPELPRHLRGDALRIEQVLVNLLGNALKFTPAG-RVSLRVRCVP 401

Query: 734 N--------------------EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
                                  +   VRDTGVG+++  L    +PF Q+  S      G
Sbjct: 402 ECAGEDALECASAAGRCLGDVHRLRFEVRDTGVGISSDRLNILFEPFTQLDTSASRAIGG 461

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           +GLGL + K +V+   G   + STP KG+      
Sbjct: 462 SGLGLAICKRLVEGMGGVIGVASTPGKGSCFWFEL 496


>gi|160937915|ref|ZP_02085273.1| hypothetical protein CLOBOL_02809 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439141|gb|EDP16895.1| hypothetical protein CLOBOL_02809 [Clostridium bolteae ATCC
           BAA-613]
          Length = 960

 Score =  298 bits (763), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 111/591 (18%), Positives = 203/591 (34%), Gaps = 31/591 (5%)

Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303
                    V    +  +           E  H  N   + + Q        S +     
Sbjct: 92  ELESREGTGVYIRTQQRITFIFREKGEALETIHIHNSMPFGEIQEDELFPAESGKRTYLE 151

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG---NLFYANPSFLLLTKYKSVDDI 360
                      + +      +  +  P     +  G    +   N     L  Y S ++ 
Sbjct: 152 LEGELRRREQKYIQQARFLSQLYNSVPCGIIQFERGEGHRIVNVNRMGWELYGYSSEEEY 211

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
                    +             +     +    +     HT   + +       +    
Sbjct: 212 RREVKNPFQMV-LDEDKEWIEGIIGGLALNGDTASY--IRHTFSRDGKQIWISVIMGRIV 268

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEI--EVMQLCSILEATSDGIAIINREGIILST- 477
                E +     +  D+     +++ +   E   L + +      I  +N    I +  
Sbjct: 269 NADGQEVIQAVFTDVTDIKQLELEQERQQLIENRSLRAAICTAYPLIMSLNLTKDIYNCF 328

Query: 478 --------NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
                   +            DI     +   +  T     + L    + +    +E   
Sbjct: 329 IEDQDACLSGRCGSYTEMIKGDIPDVYPSYREDFETAFARENVLARFAAGERDIYMEFQK 388

Query: 530 LGSTKEEKLLSLRIIIKKLPFSSCYSLT----MHD--ISEWKQEKNKLSHAKKIAEKESS 583
           +G   +   LS++II  + PF+          + D   +E  +++  L  A   A+  + 
Sbjct: 389 MGMDGKYHWLSVQIIYVENPFNDDVLAIELVKVLDSQRAEQARQEQLLRDALASAKAANQ 448

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
            KSDFL+R+SH+IRTP+ AI+G S +    +          +    ID S   +L ++ND
Sbjct: 449 AKSDFLSRMSHDIRTPMNAIVGMSTI---GQLKLDDRRSVQDCFCKIDASSRYLLSLIND 505

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLR 702
           +LD+SKIE+GKM L  E     E + E   ++   A E++I      +  + +    D  
Sbjct: 506 ILDMSKIETGKMELAHEYFDFTELMDEVNQIIYPQAEERQIEYVIYHSEPLEQFYIGDPL 565

Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSN----EEVILRVRDTGVGMTNYELEKAMK 758
            +KQI +N+LSNA+ FT +GG+I I             +  +V+DTG+GM+     +   
Sbjct: 566 RLKQILMNLLSNALKFTRAGGRIQIQIEEQKRTNGFSYLRFQVKDTGIGMSREFRSRLFM 625

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           PF Q          G+GLGL +   +V    G   + S   KG++  +  P
Sbjct: 626 PFEQEAPETARNNIGSGLGLSIVYNLVQLMGGSIEVESEKEKGSVFTVTLP 676


>gi|157692071|ref|YP_001486533.1| sporulation sensor histidine kinase A [Bacillus pumilus SAFR-032]
 gi|157680829|gb|ABV61973.1| sporulation sensor histidine kinase A [Bacillus pumilus SAFR-032]
          Length = 609

 Score =  298 bits (763), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 100/501 (19%), Positives = 205/501 (40%), Gaps = 34/501 (6%)

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
           S    +  +   + + K P P  +   G + YAN + L L    + DD+           
Sbjct: 138 SLPAFQHVSEAEQLIAKLPNPLCITILGEIVYANDAMLQLMGVSTRDDMIGKTAFD--FI 195

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
           A +  D    +   L    +  +         +    +S+ +         Q      + 
Sbjct: 196 AEEYHDIVRSRITRL----QEGLPVGMIEQIWKRKDGSSIHIEVKSSPTIYQ--NQRAEL 249

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
            +  +    +  +  ++    +   +++ + D IA+I  +   +  N +  KLF     D
Sbjct: 250 LLLVDISSRKKFQTVLQKSRERYQLLIQNSIDTIAVI-HDHKWVFMNESGIKLFEAEHYD 308

Query: 492 -ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP- 549
            ++ K     +       +   ++ I+       +       T + KL+   ++      
Sbjct: 309 KLIGKDIFHQIHSCDQQKVKKSISRIIERASDSEI-VTMSCHTFKHKLIYTEMVCIPTTF 367

Query: 550 -FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
              +   + + DISE KQ +  +  ++K++           A ++HEIR PLTAI GF +
Sbjct: 368 FGETAVQIILRDISERKQTEELMLRSEKLSIA-----GQLAAGIAHEIRNPLTAIKGFLQ 422

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
           +IK     P    R  +Y   +    + +  I+++LL ++K    +     + + L + +
Sbjct: 423 LIK-----PKTKDR-DQYFEIVFSELSRIEIILSELLMLAKP---QQTASMQTLDLKKII 473

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
           SE  +L++  AN   IL+ TS       +  D   +KQ+ +N++ NA+   P GG++ I+
Sbjct: 474 SEVTALLETQANLNGILMNTSEIEEGLLMNGDQNQLKQVFINLIKNAVESMPDGGKVDIT 533

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                +  + + +RD G+G+    +++  +PF         + +GTGLGL +   +++ +
Sbjct: 534 AKAERDG-IHVTIRDEGIGIPEAVMKRIGEPFLTT------KEKGTGLGLMVTFNILENH 586

Query: 789 MGKFYIFSTPAKGTLIEIIFP 809
            G   + S P KGT   I+FP
Sbjct: 587 NGTIRVDSHPEKGTAFHIMFP 607



 Score = 38.9 bits (89), Expect = 4.0,   Method: Composition-based stats.
 Identities = 10/74 (13%), Positives = 27/74 (36%), Gaps = 2/74 (2%)

Query: 93  GYLKEISEELPKTIGNYA-FKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW- 150
           G +   ++ + + +G      MIG    D     + D        L+          +W 
Sbjct: 165 GEIVYANDAMLQLMGVSTRDDMIGKTAFDFIAEEYHDIVRSRITRLQEGLPVGMIEQIWK 224

Query: 151 PIEGTNLYVPIDLA 164
             +G+++++ +  +
Sbjct: 225 RKDGSSIHIEVKSS 238


>gi|170727693|ref|YP_001761719.1| hybrid sensory histidine kinase BarA [Shewanella woodyi ATCC 51908]
 gi|169813040|gb|ACA87624.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
          Length = 937

 Score =  298 bits (763), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 88/322 (27%), Positives = 147/322 (45%), Gaps = 14/322 (4%)

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
               V+       L   +   L        +    ++  +                D+ E
Sbjct: 217 EMVRVVAKIREGKLDTRVDGNLIGELDLLKRGINAMASSLSEYHDEMQQNIDQATSDLRE 276

Query: 564 WKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
             ++      +L  AKK A + S  KS+FLA +SHE+RTPL  +IGF++ +         
Sbjct: 277 TLEQIEIQNVELDLAKKRALEASRIKSEFLANMSHELRTPLNGVIGFAKQLLKTPLHT-- 334

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
                +Y N I++S   +L+I+ND+LD SK+E+GK+ L   P +L E V + ++++   A
Sbjct: 335 --SQQDYINTIEKSATNLLEIINDILDFSKLEAGKLVLESLPFALRELVGDTVTILSNSA 392

Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-- 736
            EK I +      ++P  +  D   + QI  N++ NAI FT SG  + +S   T   +  
Sbjct: 393 REKDIELVIDIDQSVPEALCGDPMRIGQILTNLIGNAIKFTDSGS-VHLSLKLTDGSKDK 451

Query: 737 --VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
             +   + DTG+G+   + E   + FGQ  +S   R  GTGLGL + K +V+   G+   
Sbjct: 452 VNIRCEITDTGIGIDPQQQEILFQAFGQADSSISRRFGGTGLGLIITKRLVNRMGGQIGC 511

Query: 795 FSTPAKGTLIEIIFPLYDTSHP 816
            S   +G+      PL  + +P
Sbjct: 512 NSKANEGSTFWFTLPLETSQYP 533


>gi|283853339|ref|ZP_06370587.1| histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283571263|gb|EFC19275.1| histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 923

 Score =  298 bits (763), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 77/253 (30%), Positives = 136/253 (53%), Gaps = 9/253 (3%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I E +Q + +L  AK +AE+ +  K+DFLA+V+HEIRTPL +I G ++ + +       N
Sbjct: 376 ILENEQYQKELKLAKDLAEEANKTKTDFLAKVTHEIRTPLNSIKGMNDYLLSTSL----N 431

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
               E  + I  S N +L IVNDLLD+SKIE+G++       +L + +   I ++Q  AN
Sbjct: 432 DDQRECLSIIKESSNHLLTIVNDLLDLSKIEAGQLVFEHIDFALKQLIESTIRILQPLAN 491

Query: 681 EKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEE-- 736
           +K++ +  ++  +    +  D   ++Q+  N+ +NA+ FT +G   I+ S     + +  
Sbjct: 492 QKKLDLHVAYEGDADIVVRGDPSRIRQVLFNLANNALKFTQTGTVGIVASVAWQESLDAY 551

Query: 737 -VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            + + ++DTG+G+    L++  +PF Q  NS   +  GTGLGL +   ++    G   + 
Sbjct: 552 AITISIKDTGIGIAAEALQRIFQPFVQSDNSTSRKFGGTGLGLSICNQLIALMGGTIAVS 611

Query: 796 STPAKGTLIEIIF 808
           S P +G+      
Sbjct: 612 SRPGQGSTFTFTL 624


>gi|163850884|ref|YP_001638927.1| PAS sensor protein [Methylobacterium extorquens PA1]
 gi|163662489|gb|ABY29856.1| PAS sensor protein [Methylobacterium extorquens PA1]
          Length = 1092

 Score =  298 bits (763), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 108/781 (13%), Positives = 205/781 (26%), Gaps = 85/781 (10%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI-------GDLLKRQNT 142
           DA G +   +    +  G     +      D       +    +          L    T
Sbjct: 191 DAEGRIVHDNAANREIWGMPPQTVNWESYGD-WVGYWPETGERLRAEEWGMARALLHGET 249

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
             G+                  A PI  R     G  G           +     +  + 
Sbjct: 250 VRGELVEIERFDGGGRRLFLNNAAPIRDRAGAIVG--GVVAELDVTERIEVERRLRESEA 307

Query: 203 KFSHLHE----IKKGHSSVEKEKYDIFSQQSP------------PPHLRMKNKVSSLTEY 246
                 E         + V    +D+ S +              P   R    ++ + E 
Sbjct: 308 LARVNAERVQLALSAGAIVGTWFWDLPSDRFTVDEGFARAFGLDPALGREGLSLAQVVET 367

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
               D     +      +   +   Q      +   Y  +               +    
Sbjct: 368 VHSDDKAGLAKAIGEAIARGGAYAHQYRVRRADGRYYWIEANGRVDHAPDGTPLSFPGVL 427

Query: 307 NHPSLSAYFDEGENLTPETV-----------DKCPIPFFVYSHGNLFYA-NPSFLLLTKY 354
                        +     +           D  P   ++       Y  N  +   T  
Sbjct: 428 IDVEERRAVAAERDRATALLREKAVEFETLADNIPALCWMARADGHIYWYNRRWYDYTG- 486

Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
              + ++  G  +        +     +      +       +     ++          
Sbjct: 487 TDAESMQGWGWKA---VHDPAALPGVTERWQHSIATGERFDMT---FPLRGRDGTFRPFL 540

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC-----------SILEATSD 463
                  ++    +   G   +  D R  +  +      L             I +A+SD
Sbjct: 541 TRIVPIRDETGTVVRWFGTNTDITDLRAVQDALHRLNETLEEQVAARTAERDQIWQASSD 600

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
            +A+ + EG  +S N A S   G+   ++   PF  F+      +       +   +++ 
Sbjct: 601 LLAVADFEGRFVSLNPAWSATLGWSEAELKAVPFLDFVHPEDRELTLAAAASLARGEMQL 660

Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK--QEKNKLSHAKKIAEKE 581
             E        + +  S       +P       ++ D++  K        +       ++
Sbjct: 661 GFENRYRTRDGDYRWFSWNT----VPRQGLIYASVRDVTAIKGQARALAEAEEALRQSQK 716

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
                     ++H+    L  I G  E +   R           Y      +      + 
Sbjct: 717 MEAVGQLTGGLAHDFNNLLAGISGSLE-LMQTRISQGRLKDVDRYMGAAQGAAKRAAALT 775

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701
           + LL  S+    +  L   P  ++  V     L++       I I    A  +   L D 
Sbjct: 776 HRLLAFSR----RQTLDPRPTDVNRLVMGMEDLIR-RTVGPTITIEVVGAAGLWPSLVDP 830

Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTT-------------HTSNEEVILRVRDTGVGM 748
             ++   LN+  NA    P GG+I I T                  + + L V DTG GM
Sbjct: 831 PQLENALLNLCINARDAMPEGGRITIETANKWLDAHAAHQHDVPPGQYLSLCVTDTGTGM 890

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           +     KA  PF     +    G+GTGLGL +         G+  I+S   +GT + I  
Sbjct: 891 SPDVRAKAFDPFFTTKPT----GQGTGLGLSMIYGFAKQTGGQVRIYSELGQGTTVCIYL 946

Query: 809 P 809
           P
Sbjct: 947 P 947



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 32/314 (10%), Positives = 79/314 (25%), Gaps = 24/314 (7%)

Query: 294 NNSKESFEYLSHRNHP-SLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLL 351
             +          +HP      + E        V   P      +     F+ N ++  L
Sbjct: 12  GEAARMIAERDWSDHPLGPPQTWPESLRTALSLVLNSPESMILAWGPELHFFFNDTYFPL 71

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411
              +    +        +           I         R        L T +   E   
Sbjct: 72  LGPRLPWAMGER--FDRVWADAWDQAKPIIDDA-FAGKSRRFEDLPWTLATDR--GEAQT 126

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDT-------RINKRKMEIEVMQLCSILEATSDG 464
             +F      +             E           R ++  +      L + L+    G
Sbjct: 127 WWSFSYSRVLDGEGRIAGLFVFTNETTKRIRMEALQRESEAALRRSESFLAATLQGLPVG 186

Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL-----EQNTPSVMNHYLTEILSL 519
           + I + EG I+  N A  +++G P + +  + +  ++                +   L  
Sbjct: 187 VIIADAEGRIVHDNAANREIWGMPPQTVNWESYGDWVGYWPETGERLRAEEWGMARALLH 246

Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHAK 575
                 E + +                 +   +       +   D++E  + + +L  + 
Sbjct: 247 GETVRGELVEIERFDGGGRRLFLNNAAPIRDRAGAIVGGVVAELDVTERIEVERRLRES- 305

Query: 576 KIAEKESSHKSDFL 589
           +   + ++ +    
Sbjct: 306 EALARVNAERVQLA 319



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/265 (12%), Positives = 61/265 (23%), Gaps = 23/265 (8%)

Query: 47  DSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTI 106
           D  E+     +   + +       E  F            W   A G++   +       
Sbjct: 429 DVEERRAVAAERDRATALLREKAVE--FETLADNIPA-LCWMARADGHIYWYNRRWYDYT 485

Query: 107 GNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNL-YVPIDLAA 165
           G  A  M G     V D   +              T       +P+ G +  + P     
Sbjct: 486 GTDAESMQGWGWKAVHDPAALPGVTERWQ--HSIATGERFDMTFPLRGRDGTFRPFLTRI 543

Query: 166 LPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH-----------EIKKGH 214
           +PI          R FG           +    RL++                 +     
Sbjct: 544 VPIRDETGTVV--RWFGTNTDITDLRAVQDALHRLNETLEEQVAARTAERDQIWQASSDL 601

Query: 215 SSVEKEKYDIFSQQSPP----PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270
            +V   +    S              + K     ++   +D  L       L   E  L 
Sbjct: 602 LAVADFEGRFVSLNPAWSATLGWSEAELKAVPFLDFVHPEDRELTLAAAASLARGEMQLG 661

Query: 271 EQEDFHTINLNQYTKKQYFGTLQNN 295
            +  + T + +           Q  
Sbjct: 662 FENRYRTRDGDYRWFSWNTVPRQGL 686


>gi|320173783|gb|EFW48966.1| phosphate regulon sensor protein [Shigella dysenteriae CDC 74-1112]
          Length = 431

 Score =  298 bits (763), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 76/427 (17%), Positives = 152/427 (35%), Gaps = 37/427 (8%)

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             +L       I     L  + W     L +         +        G+    +  + 
Sbjct: 33  WFLLASVTGLLIWHFWNLLRLSW----WLWVDRSMTPPPGRGSWEPLLYGLHQMQLRNKK 88

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            +R++   + +  S  E+  D + +   EG I   N    ++ G    +   +     L 
Sbjct: 89  RRRELGNLIKRFRSGAESLPDAVVLTTEEGGIFWCNGLAQQILGLRWPEDNGQNILNLLR 148

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
                    +   + + D  + L  +          L L I +          +   D++
Sbjct: 149 YP------EFTQYLKTRDFSRPLNLVLNTG------LHLEIRVMPYTHKQ-LLMVARDVT 195

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  Q +                + +F A VSHE+RTPLT + G+ E++  Q        +
Sbjct: 196 QMHQLEG--------------ARRNFFANVSHELRTPLTVLQGYLEMMDEQPLEGAVREK 241

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                + +      +  +V  LL +SKIE+    L  E V +   +       Q  + +K
Sbjct: 242 A---LHTMREQTQRMEGLVKQLLTLSKIEAAPTQLLNEKVDVPMMLRVVEREAQTLSQKK 298

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           +        N + ++  +   ++    N++ NA++ TP G  I +      +      V 
Sbjct: 299 Q-TFTFEIDNGL-KVSGNEDQLRSAISNLVYNAVNHTPEGTHITVRWQRVPHG-AEFSVE 355

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G G+    + +  + F ++  ++  +  G+GLGL + K  V+ +  +  I ST  KGT
Sbjct: 356 DNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHAVNHHESRLNIESTVGKGT 415

Query: 803 LIEIIFP 809
               + P
Sbjct: 416 RFSFVIP 422


>gi|239908609|ref|YP_002955351.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239798476|dbj|BAH77465.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 655

 Score =  298 bits (763), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 80/445 (17%), Positives = 183/445 (41%), Gaps = 29/445 (6%)

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
           +  ++A +  +L +S +           ++ +      +T     + +   +     G  
Sbjct: 82  VHPDDANRVGLLLQSLKPGDVGEQEFRFVRKDGG-VRWVTERYRCEFDAANKRYVLYGAI 140

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
            +  D + ++         + ++L          +  G ++  +     L+G    D+ +
Sbjct: 141 KDITDRKKDEA-------LMRAMLANLPLDFWARDLAGRVILQSDISQALWG----DLTQ 189

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-- 552
               + +  +T +       +  +      ++            +    ++  +      
Sbjct: 190 ACGDMDVSPDTLARWRANAAKAYAG---HRVDAEAEYRLPGGNEIFCHEMLAPIRSRGEI 246

Query: 553 -CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
                   D+++ ++ ++ L  AK+ AE  +  KS+FLA +SHE+RTPL  I+   +++ 
Sbjct: 247 VGIMGVNVDLTDRRRMEHDLRAAKEGAEAANQAKSEFLANMSHEVRTPLNGILSTLQLLG 306

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
                   +    E      +S + +  +++D+LD++KIE+GK+          +     
Sbjct: 307 TTSL----DAEQQECLFAAIKSSHRLTQLLSDILDLTKIEAGKLPCRESRFEFGQLRRAV 362

Query: 672 ISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
           + L    A++K + +  + ++++P  ++ D   ++QI  N++ NA+ FT  G Q+ +   
Sbjct: 363 LELFAKAASDKDVGLVFTISDDMPRWLVGDEVRLRQILFNLVGNAVKFTLQG-QVTVEAK 421

Query: 731 HTSNE-----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
              +       V+  V DTG+G+ + +L+   +PF QI  S   R +G GLGL + + +V
Sbjct: 422 ALPSAGGDRLHVLFVVSDTGIGIPDDQLQYVFEPFSQIEGSYTRRFQGAGLGLSIVRKLV 481

Query: 786 DANMGKFYIFSTPAKGTLIEIIFPL 810
               G+  +  T   GT +    PL
Sbjct: 482 RMLGGELAVDGTEGGGTTMYCSIPL 506


>gi|218703681|ref|YP_002411200.1| phosphate regulon sensor protein [Escherichia coli UMN026]
 gi|293403517|ref|ZP_06647608.1| phoR [Escherichia coli FVEC1412]
 gi|298379129|ref|ZP_06989010.1| phoR [Escherichia coli FVEC1302]
 gi|300900463|ref|ZP_07118631.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 198-1]
 gi|331661772|ref|ZP_08362695.1| phosphate regulon sensor kinase PhoR [Escherichia coli TA143]
 gi|218430778|emb|CAR11652.1| sensory histidine kinase in two-component regulatory system with
           PhoB [Escherichia coli UMN026]
 gi|284920206|emb|CBG33265.1| phosphate regulon two-component system, sensor kinase [Escherichia
           coli 042]
 gi|291429370|gb|EFF02390.1| phoR [Escherichia coli FVEC1412]
 gi|298280242|gb|EFI21746.1| phoR [Escherichia coli FVEC1302]
 gi|300356032|gb|EFJ71902.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 198-1]
 gi|331060194|gb|EGI32158.1| phosphate regulon sensor kinase PhoR [Escherichia coli TA143]
          Length = 431

 Score =  298 bits (763), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 73/427 (17%), Positives = 151/427 (35%), Gaps = 37/427 (8%)

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             +L       I     L  + W     L +         +        G+    +  + 
Sbjct: 33  WFLLASVTGLLIWHFWNLLRLSW----WLWVDRSMTPPPGRGSWEPLLYGLHQMQLRNKK 88

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            +R++   + +  S  E+  D + +   EG I   N    ++ G    +   +     L 
Sbjct: 89  RRRELGNLIKRFRSGAESLPDAVVLTTEEGGIFWCNGLAQQILGLRWPEDNGQNILNLLR 148

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
               +               +   +         + L +R++           +   D++
Sbjct: 149 YPEFTQYL----------KTRDFSRPLNLVLNTGRHLEIRVMPYTHKQ---LLMVARDVT 195

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  Q +                + +F A VSHE+RTPLT + G+ E++  Q        +
Sbjct: 196 QMHQLEG--------------ARRNFFANVSHELRTPLTVLQGYLEMMDEQPLEGAVREK 241

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                + +      +  +V  LL +SKIE+   +L  E V +   +       Q  + +K
Sbjct: 242 A---LHTMREQTQRMEGLVKQLLTLSKIEAAPTHLLNEKVDVPMMLRVVEREAQTLSQKK 298

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           +        N + ++  +   ++    N++ NA++ TP G  I +      +      V 
Sbjct: 299 Q-TFTFEIDNGL-KVSGNEDQLRSAISNLVYNAVNHTPEGTHITVRWQRVPHG-AEFSVE 355

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G G+    + +  + F ++  ++  +  G+GLGL + K  V+ +  +  I ST  KGT
Sbjct: 356 DNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHAVNHHESRLNIESTVGKGT 415

Query: 803 LIEIIFP 809
               + P
Sbjct: 416 RFSFVIP 422


>gi|220923418|ref|YP_002498720.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans
           ORS 2060]
 gi|219948025|gb|ACL58417.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans
           ORS 2060]
          Length = 662

 Score =  298 bits (763), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 79/497 (15%), Positives = 166/497 (33%), Gaps = 34/497 (6%)

Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
           F +   G +   NP       YK  + I      S          +   + +     D  
Sbjct: 30  FMLDPTGIVTSWNPGAERFKGYKEAEIIGQ--HFSRFYTEEDRQTDLPRRALETAARDGR 87

Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
                     ++ +    +    I     +     +    +  +    +  ++ +     
Sbjct: 88  ---FEQEGWRVRKDGSR-MWAHVIIDPIRDPSGTLIGFAKVTRDITKRQAAQQALRESEE 143

Query: 453 QLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
           +   +++   D  I +++ EGI+ + N    ++ GY   +I+ + F+ F  +   +    
Sbjct: 144 RFRLLVQGVRDYAIFMLSPEGIVRNWNSGAQRIKGYSEAEIVGQHFSRFYTEEDRAAGVP 203

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQE 567
               + +       E       ++       ++I  +   +   +       DI+E +  
Sbjct: 204 A-RALETAAREGKFEAEGWRVRRDGTRFWASVLIDAIRDETGRLVGFAKVTRDITERRNA 262

Query: 568 KNKLSHAKKIAEKES--SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           +  L   +    +           A ++H+    LT ++G  ++++              
Sbjct: 263 QQALEKTQAALFQAQKMEALGGLSAGIAHDFNNLLTVVLGNLDLLRRAPEERRAR----- 317

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
             +   ++      +   LL   + +     L  E V +   +     +++       I 
Sbjct: 318 LIDNAMQAVEQGRKLTQQLLAFGRSQ----TLRPEVVDVTRLILGMDDMLKQSLRG-DIG 372

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH------TSNEEVIL 739
           I    A ++  I AD   ++   +N+  NA    P+GGQ  I T +         + V +
Sbjct: 373 IVLDLAEDLWPIEADPAQLQIALINLAVNARDAMPNGGQFRIKTENVTTHDGEVAQSVAI 432

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V DTG GM    L +A +PF     S +  G+GTGLGLP        + G   + S   
Sbjct: 433 SVSDTGHGMPPDVLARAFEPFF----STKEVGKGTGLGLPQVYGFAQQSNGSVRVTSEVG 488

Query: 800 KGTLIEIIFPLYDTSHP 816
           +GT   I  P  +   P
Sbjct: 489 RGTTFTISLPRTNAQAP 505



 Score = 84.3 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 21/139 (15%), Positives = 51/139 (36%), Gaps = 6/139 (4%)

Query: 450 EVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
           E  +   +++A +D  I +++  GI+ S N    +  GY   +I+ + F+ F  +     
Sbjct: 13  EEQRFRLLIQAVTDYAIFMLDPTGIVTSWNPGAERFKGYKEAEIIGQHFSRFYTEEDRQT 72

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEW 564
                  + +       E+      K+   +   +II  +   S   +       DI++ 
Sbjct: 73  DLPR-RALETAARDGRFEQEGWRVRKDGSRMWAHVIIDPIRDPSGTLIGFAKVTRDITKR 131

Query: 565 KQEKNKLSHAKKIAEKESS 583
           +  +  L  +++       
Sbjct: 132 QAAQQALRESEERFRLLVQ 150



 Score = 81.2 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 33/388 (8%), Positives = 98/388 (25%), Gaps = 16/388 (4%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + +D  G +   +    +  G    ++IG              +     L         
Sbjct: 29  IFMLDPTGIVTSWNPGAERFKGYKEAEIIGQHFSRFYTEEDRQTDLPRRALETAARDGRF 88

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +   W +      +   +   PI   +    GF    +          +   +  +++F 
Sbjct: 89  EQEGWRVRKDGSRMWAHVIIDPIRDPSGTLIGFAK--VTRDITKRQAAQQALRESEERFR 146

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS-----LTEYYAHKDDVLKTEKYP 260
            L +  + ++        I    +           +       + +Y  +D         
Sbjct: 147 LLVQGVRDYAIFMLSPEGIVRNWNSGAQRIKGYSEAEIVGQHFSRFYTEEDRAAGVPARA 206

Query: 261 LLTSEESSLPEQEDFH-TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
           L T+      E E +    +  ++        +++ +     +       +      +  
Sbjct: 207 LETAAREGKFEAEGWRVRRDGTRFWASVLIDAIRDETGRLVGFAKVTRDITERRNAQQAL 266

Query: 320 NLTPETVDKCP--IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
             T   + +          S G     N    ++     +         + L+D    + 
Sbjct: 267 EKTQAALFQAQKMEALGGLSAGIAHDFNNLLTVVLGNLDLLRRAPEERRARLIDNAMQAV 326

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
               K      +          +  +       L +      K +   +      +  + 
Sbjct: 327 EQGRKLTQQLLAFGRSQTLRPEVVDVTR-----LILGMDDMLKQSLRGDIGIVLDLAEDL 381

Query: 438 VDTRINKRKMEIEVMQLC-SILEATSDG 464
                +  +++I ++ L  +  +A  +G
Sbjct: 382 WPIEADPAQLQIALINLAVNARDAMPNG 409


>gi|77165180|ref|YP_343705.1| PAS sensor, signal transduction histidine kinase [Nitrosococcus
           oceani ATCC 19707]
 gi|254434153|ref|ZP_05047661.1| PAS fold family [Nitrosococcus oceani AFC27]
 gi|76883494|gb|ABA58175.1| PAS/PAC sensor signal transduction histidine kinase [Nitrosococcus
           oceani ATCC 19707]
 gi|207090486|gb|EDZ67757.1| PAS fold family [Nitrosococcus oceani AFC27]
          Length = 368

 Score =  298 bits (763), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 66/362 (18%), Positives = 149/362 (41%), Gaps = 16/362 (4%)

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
              + +   D + I + +G I+  N    ++ GY   +++ +P  + + +          
Sbjct: 9   FERLFDTAPDAMVISDHQGRIVLVNAMAERMLGYSRAELISQPLEILVPKQHRDGHARQR 68

Query: 514 TEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSCYSLT--MHDISEWKQEKN 569
            +       + +   +      K+  + S  I +  +       +T  + DI+E KQ + 
Sbjct: 69  QKYYRHPRTRPMGEGRELYAVRKDGSMFSAEISLSPMEVDGRLLITSAIRDITERKQIQK 128

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
            L    +   + ++    F    SH+++ PL  +  +++++  +    L +    E+  +
Sbjct: 129 TLEQQTQDLMRSNAELEQFAYVASHDLQEPLRMVSSYAQLLARRYRNQLDSD-ADEFIEF 187

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           +      +  ++NDLL  S+  +G  N  F   + +  V + +  +Q    E +  +   
Sbjct: 188 MVDGATRMQALINDLLAYSR--AGTKNRTFATTNSNGVVRQVLESLQFVVKETQASLTVD 245

Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI-IIST-THTSNEEVILRVRDTGVG 747
               +P ++AD   + Q+  N++SNA+ F   G  I  I         E+I  + D G+G
Sbjct: 246 ---PLPLLIADEAQLAQLFQNLISNALKF--RGETIPRIHISAKEEENEIIFSIADNGIG 300

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           +     E+    F ++ +  +    GTG+GL + K +V+ + G+ ++ S   +G      
Sbjct: 301 IEPQYAERIFLLFQRLHS--KREYPGTGIGLAICKKIVECHGGRIWVESKQGRGATFFFT 358

Query: 808 FP 809
            P
Sbjct: 359 LP 360



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/154 (9%), Positives = 36/154 (23%), Gaps = 34/154 (22%)

Query: 316 DEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGL-------- 366
            E +       D  P    +    G +   N     +  Y   + I     +        
Sbjct: 3   REIQLPFERLFDTAPDAMVISDHQGRIVLVNAMAERMLGYSRAELISQPLEILVPKQHRD 62

Query: 367 ------STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
                       P+       + +   R D +  +A   L  ++ +              
Sbjct: 63  GHARQRQKYYRHPRTRPMGEGRELYAVRKDGSMFSAEISLSPMEVDGR------------ 110

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
                  +       +  + +  ++ +E +   L
Sbjct: 111 -------LLITSAIRDITERKQIQKTLEQQTQDL 137



 Score = 42.7 bits (99), Expect = 0.25,   Method: Composition-based stats.
 Identities = 31/259 (11%), Positives = 64/259 (24%), Gaps = 22/259 (8%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL--LKRQNTWYGKT 147
           D  G +  ++    + +G    ++I   L  +    H D +           +    G+ 
Sbjct: 24  DHQGRIVLVNAMAERMLGYSRAELISQPLEILVPKQHRDGHARQRQKYYRHPRTRPMGEG 83

Query: 148 T-LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
             L+ +         +++  P+     E  G     I    R   + + + K L+++   
Sbjct: 84  RELYAVRKDGSMFSAEISLSPM-----EVDGR--LLITSAIRDITERKQIQKTLEQQTQD 136

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
           L                   +Q          +   +   YA         +      E 
Sbjct: 137 LMRSNAEL------------EQFAYVASHDLQEPLRMVSSYAQLLARRYRNQLDSDADEF 184

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
                        L            +N +  +            S  F   E     TV
Sbjct: 185 IEFMVDGATRMQALINDLLAYSRAGTKNRTFATTNSNGVVRQVLESLQFVVKETQASLTV 244

Query: 327 DKCPIPFFVYSHGNLFYAN 345
           D  P+     +     + N
Sbjct: 245 DPLPLLIADEAQLAQLFQN 263


>gi|317475821|ref|ZP_07935078.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
 gi|316907981|gb|EFV29678.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
          Length = 629

 Score =  298 bits (763), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 103/506 (20%), Positives = 194/506 (38%), Gaps = 44/506 (8%)

Query: 323 PETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
                  P+   +Y+  G L   N   L +   +  +D+         +   ++ +    
Sbjct: 137 HNIYKNLPVGIELYNMQGVLTDLNDKELEMFHLQQKEDLLGINIFDNPIFPDEMKEK--- 193

Query: 382 KPVMLYRSDRTCIAASARLHTI-----QWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
               L + +            I        +  ++ +        ++    +    I  +
Sbjct: 194 ----LRKFEDADFTFRYDFSKIGNYYNSQKKTGTMELVTKVTTLYDEHHTPINYLLINAD 249

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIA---IINREGIILSTNRAVSKLFG----YPV 489
             +  I   K++        I      G A   ++ ++G       +     G     P+
Sbjct: 250 KTEATIAYNKIQEFESFFKLIGNYAKVGYAHYNLLTQKG---DAQHSWYINIGEKEETPL 306

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII---- 545
            DI+       +  +    M  +L             K      +        + +    
Sbjct: 307 SDIIG--VYNHIHPDDRHYMLDFLNNARK-GTENKFNKEVRVLRENGSCSWTHVNLLVKV 363

Query: 546 -KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
                 S       +DI+  K+ +  L  AK+ AE+    KS F+A +SHEIRTPL AII
Sbjct: 364 YAPEQNSIELICINYDITRLKETEAMLIQAKEKAEESDRLKSAFIANMSHEIRTPLNAII 423

Query: 605 GFSEVIKNQRFGPLGNPRYIEY-ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           GFS ++       + + +  EY  + I+ +  L+L+I+N++LD+SKIE+G M L     S
Sbjct: 424 GFSGLL-----PYMEDAKEREYYISLINHNNKLLLNIINEVLDLSKIEAGHMELTPVWFS 478

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
           L E + E+ +  +    E  + ++  +  +   I  D   +KQI  N+LSNA+  T  G 
Sbjct: 479 LSELIDESCTEYRSNVPE-GVTLKKRYPASPCLIEQDSMRIKQILSNLLSNALKNTTQG- 536

Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
            + +S     +  V + V DTG G+   +L    + F +  +      +G GLGL + K+
Sbjct: 537 YVEVSYETEQSG-VKISVTDTGRGIPQEKLGVIFERFEKADSYI----QGAGLGLSICKS 591

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFP 809
           +++   G   + S   +G+   + FP
Sbjct: 592 IIEQMNGTIEVASVLGEGSTFTVTFP 617


>gi|257487150|ref|ZP_05641191.1| PAS [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|331009229|gb|EGH89285.1| PAS protein [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 1185

 Score =  298 bits (763), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 124/749 (16%), Positives = 265/749 (35%), Gaps = 47/749 (6%)

Query: 75  VFDPIPRTVRFTWNI-DAHGYL-KEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH 132
            F+     V F++ + D    L   I+  L     +   +++G         L  D    
Sbjct: 218 KFESRLPPVGFSFAVRDDEQRLLTFINRALDSIEPSIGREVLGR-WTM---GLGADVEGQ 273

Query: 133 IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIY-SRNREFSGFRGFGIVHVNRVDN 191
              L        G    W ++  ++ +        IY  +N ++ G     +  ++R+  
Sbjct: 274 RIRL-------TGAERRWLLKHPSVTIATTQHPPYIYKDKNGQWVGLNADVLSRISRM-T 325

Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD 251
             + + + +      +  ++ G + +     +   ++     L         +  +  + 
Sbjct: 326 GLQFVHQEVPSTQQSIEVLRAGLAEMNTSLAENAERRR---FLDFTYSFGGNSWMFVVRS 382

Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
           +         L  +  +LP +                   L++  +     +  R   + 
Sbjct: 383 ERSSRVSLDSLAGKVLALPARH-----------------ALEDLIRREHPLIQLRLVDTY 425

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
                  E+   +   +  +  +++  G L  A  S            I+    L  +L+
Sbjct: 426 DQARALVESGVADATIQNEVGAYLFPAGQLKVA-RSVDGQWSPDRFSVIKTQPELLGILN 484

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
                   A    +  +   + +          W R        +           +  +
Sbjct: 485 KALEEFPVAELRSIRLKWLGSALP-----QPSLWGRIPQWVFWVLALALLTGLVSLVWSS 539

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
            ++ +       +R++  ++    ++ +   + I + + +G ++S NR+  +  G   E 
Sbjct: 540 RLKVQIRQRLKAERQLNDQLAFKHALFDGIPNPIYVRDLKGRLISCNRSYEQSLGISFEQ 599

Query: 492 ILRKPFT--VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
           +  +  T    + +     M+     +L        ++    S K   +    +      
Sbjct: 600 MNGRRLTDVNLIPRALAEQMHTDYLNLLENHQPVFSDRTIELSGKRMDVWQWTVPFFAAD 659

Query: 550 FS-SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                      DI+E K+ + +L  A ++A + +  KS FLA +SHEIRTP+ AIIG  E
Sbjct: 660 GQLQGLLGGWVDITERKRLEQQLQEAMRLAAQANEAKSVFLASMSHEIRTPMGAIIGLLE 719

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
           +           P          RS   ++ ++ + LD+++IE+G M L     SL    
Sbjct: 720 LECAHALRKGHTPSQG--LQVAHRSATELVALIGESLDLARIEAGGMQLSLTVTSLQALF 777

Query: 669 SEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIII 727
              I L    A EK + +R  F+         D   ++Q+  N+L NA+ FT  G  ++ 
Sbjct: 778 EGVIELFSAQAREKDLELRLEFSEQAQGDYWLDPLRLRQVLHNVLGNALKFTRQGSVVLR 837

Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
                 +  + + ++D+G G+     ++  +PF Q  +       G+GLGL + + +V+ 
Sbjct: 838 VVALDDSSRLRIAIQDSGEGIEPERQQQIFQPFIQASDDTAAHYGGSGLGLSITRQLVEL 897

Query: 788 NMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
             G   + S+P +GTL+ I  PL   S P
Sbjct: 898 MKGDISLHSSPGEGTLVNIDLPLVRVSEP 926


>gi|258516891|ref|YP_003193113.1| histidine kinase [Desulfotomaculum acetoxidans DSM 771]
 gi|257780596|gb|ACV64490.1| histidine kinase [Desulfotomaculum acetoxidans DSM 771]
          Length = 544

 Score =  298 bits (763), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 89/382 (23%), Positives = 156/382 (40%), Gaps = 31/382 (8%)

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           +LE       ++++E      N     L      D       V +       +   +  I
Sbjct: 21  VLEN-----ILVDQEVEFYKVNSGNEALALLLSHDFALVLLDVQMPGMDGFEIAELMRGI 75

Query: 517 LSLDLRQTL-------EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK---- 565
                   +       E+  +    E   +       +            ++ + K    
Sbjct: 76  EKTKSIPIIFVTAISKEQKHIFKGYEAGAVDYLFKPLEPEILRSKVKVFLELHKQKILLQ 135

Query: 566 -QEKN------KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            Q +       +LS A+K AE  +  KS FLA +SHEIRTP+ AIIG ++++        
Sbjct: 136 KQAEELEQKMMQLSLAQKAAEAANIAKSAFLANMSHEIRTPMNAIIGMADLLWETSLTK- 194

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
                 EY      +G  +L+++ND+LD+SK+E+G + L  +  ++ + V + +  + + 
Sbjct: 195 ---EQREYVGIFRTAGQNLLNLINDILDLSKVEAGHLKLEQQDFNIKKLVEKTVEFMSVQ 251

Query: 679 ANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH---TSN 734
           AN K + +      ++P  ++ D   ++QI +N+L NAI FT  G  I+I         N
Sbjct: 252 ANIKFLSLSYQIKPDVPGFVVGDQNRLQQILVNLLGNAIKFTEKGEVILIIEKLSMQEEN 311

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
             +   V DTG+G+   + E   + F Q   S   +  GTGLGL + K +V+A  G   +
Sbjct: 312 VFLKFSVSDTGIGIEKEKSEIIFESFTQADASTTSKFGGTGLGLTICKRLVEAMGGHIGV 371

Query: 795 FSTPAKGTLIEIIFPLYDTSHP 816
            S   +G+       L     P
Sbjct: 372 ESEIEQGSTFFFSIQLKIGKEP 393


>gi|182415371|ref|YP_001820437.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
 gi|177842585|gb|ACB76837.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
          Length = 712

 Score =  298 bits (763), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 80/525 (15%), Positives = 181/525 (34%), Gaps = 50/525 (9%)

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVY--SHGNLFYANPSFLLLTKYKSVDDIEIAG 364
                 A  +       +  + C     +   +   L   NP+F  +  +     +    
Sbjct: 73  RQLDEQAKIEVELRQWADAFNHCAHGIAIGIPATNRLLACNPAFAAMHGFT----VAEMN 128

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
           G   L         +  + V +   D        + + ++ +  +   +        +  
Sbjct: 129 GRDVLTLYVPSDWEHVRRNVAIADRDGR---VQFQANRVRKDG-SVFTVQVDLVSVRDAN 184

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG-IILSTNRAVSK 483
              + +     +  +    + +      +  +++E   +   I +     I+  + A  K
Sbjct: 185 EALLYRVTTVQDVTERNRAEAQRRESEDRFRAVVENIHEVFWIHDPSHIRIVYVSPAFEK 244

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           ++G P  +++      +L+          L  ++     +  ++       +     +  
Sbjct: 245 IWGRPCAEVVNWDSETWLQTLHADD-RERLRRVVQGGTPEGYDEQYRILRPDGTERWVHD 303

Query: 544 IIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
               +   +           DI+E KQ +++   A+++              V+H++   
Sbjct: 304 RSFPVKDGAGRVVRIVGVAQDITERKQLESQFLRAQRL-----EAIGTLAGGVAHDLNNI 358

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK-IESGKMNLH 658
           L  ++  + ++K      + N    E  + ++RS     DI+  LL  S+ +E  ++ L 
Sbjct: 359 LAPMLMAAGLLKEN----ITNEHDREMLSMVERSARRGADIIRQLLTFSRGVEGSRLALQ 414

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718
                +   V E + +++     + I +       +  ++AD   + Q+ +N+  NA   
Sbjct: 415 -----IRHLVREMMGIMRETFPRE-ITLIDQTKGELWPVVADATQLHQVLVNLCVNARDA 468

Query: 719 TPSGGQIIISTTHTS--------------NEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764
            P GG + IS  +                   V+L V+DTGVGMT   +E+   PF    
Sbjct: 469 MPHGGTLAISAVNVEFVAGDAQLPHDAPPGSYVMLSVKDTGVGMTPEIMERIFDPFFTTK 528

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +     G GTGLGL     +V ++ G   + S   KG+   +  P
Sbjct: 529 DL----GRGTGLGLSTVLGIVRSHGGFVNVSSEAGKGSDFRVYLP 569



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/238 (9%), Positives = 54/238 (22%), Gaps = 10/238 (4%)

Query: 94  YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIE 153
            L   +       G    +M G  +  +      +       +  R      +      +
Sbjct: 108 RLLACNPAFAAMHGFTVAEMNGRDVLTLYVPSDWEHVRRNVAIADRDGRVQFQANRVRKD 167

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
           G+   V +DL  + +   N     +R    V      N   A  +  + +F  + E    
Sbjct: 168 GSVFTVQVDL--VSVRDANEALL-YR-VTTVQDVTERNRAEAQRRESEDRFRAVVENIHE 223

Query: 214 HSSVEKEKYDIFSQQSPPPHLRMKN------KVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
              +    +      SP                 S T       D  +  +  +      
Sbjct: 224 VFWIHDPSHIRIVYVSPAFEKIWGRPCAEVVNWDSETWLQTLHADDRERLRRVVQGGTPE 283

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
              EQ      +  +         +++ +      +      +     +         
Sbjct: 284 GYDEQYRILRPDGTERWVHDRSFPVKDGAGRVVRIVGVAQDITERKQLESQFLRAQRL 341


>gi|254227454|ref|ZP_04920886.1| Signal transduction histidine kinase [Vibrio sp. Ex25]
 gi|262396281|ref|YP_003288134.1| signal transduction histidine kinase [Vibrio sp. Ex25]
 gi|151940066|gb|EDN58892.1| Signal transduction histidine kinase [Vibrio sp. Ex25]
 gi|262339875|gb|ACY53669.1| signal transduction histidine kinase [Vibrio sp. Ex25]
          Length = 631

 Score =  298 bits (763), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 72/256 (28%), Positives = 130/256 (50%), Gaps = 8/256 (3%)

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
             + + ++ + +L   +  AE  +  KS+FLA +SHEIRTP+  IIG + ++ + +    
Sbjct: 218 RSVEKVREHQTELEEERDRAEVANRKKSEFLATMSHEIRTPMNGIIGVASLLGDTKL--- 274

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
            +P+  E+   ID S + ++ I++D+LD SK+E+GK+ L      L   + + ISL  + 
Sbjct: 275 -DPQQKEFVEIIDSSSHSLMTIIDDILDFSKVEAGKVELENVSYDLRRILDDVISLHTVK 333

Query: 679 ANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQ---IIISTTHTSN 734
           A +K + + +    ++P  +  D   +KQ+  N+LSNAI FT  G     + ++      
Sbjct: 334 AKQKNLQLLSDIDPHLPAEVQGDAARLKQVLNNLLSNAIKFTDRGHVKLLVELTRQEHDV 393

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
             +  RV D+G+G+     +   + F Q   S   +  GTGLGL +   +V+   G+  +
Sbjct: 394 AMIRFRVVDSGIGIAKENQQAIFERFQQADGSTTRKYGGTGLGLAIGAQLVNLMGGEIQL 453

Query: 795 FSTPAKGTLIEIIFPL 810
            S    G+  E   P+
Sbjct: 454 TSELGLGSCFEFSIPV 469


>gi|110640661|ref|YP_668389.1| phosphate regulon sensor protein [Escherichia coli 536]
 gi|191173480|ref|ZP_03035007.1| phosphate regulon sensor protein PhoR [Escherichia coli F11]
 gi|110342253|gb|ABG68490.1| phosphate regulon sensor protein phoR [Escherichia coli 536]
 gi|190906189|gb|EDV65801.1| phosphate regulon sensor protein PhoR [Escherichia coli F11]
 gi|324010711|gb|EGB79930.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 60-1]
          Length = 431

 Score =  298 bits (763), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 73/427 (17%), Positives = 150/427 (35%), Gaps = 37/427 (8%)

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             +L       I     L  + W     L +         +        G+    +  + 
Sbjct: 33  WFLLASVTGLLIWHFWNLLRLSW----WLWVDRSMTPPPGRGSWEPLLYGLHQMQLRNKK 88

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            +R++   + +  S  E+  D + +   EG I   N    ++ G    +   +     L 
Sbjct: 89  RRRELGNLIKRFRSGAESLPDAVVLTTEEGGIFWCNGLAQQILGLRWPEDNGQNILNLLR 148

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
               +               +   +         + L +R++           +   D++
Sbjct: 149 YPEFTQYL----------KTRDFSRPLNLVLNTGRHLEIRVMPYTHKQ---LLMVARDVT 195

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  Q +                + +F A VSHE+RTPLT + G+ E++  Q        +
Sbjct: 196 QMHQLEG--------------ARRNFFANVSHELRTPLTVLQGYLEMMDEQPLEGAVREK 241

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                + +      +  +V  LL +SKIE+   +L  E V +   +       Q  + +K
Sbjct: 242 A---LHTMREQTQRMEGLVKQLLTLSKIEAAPTHLLNEKVDVPMMLRVVEREAQTLSQKK 298

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           +        N + ++  +   ++    N++ NA++ TP G  I +      +      V 
Sbjct: 299 Q-TFTFEIDNGL-KVSGNEDQLRSAISNLVYNAVNHTPEGTHITVRWQRVPHG-AEFSVE 355

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G G+    +    + F ++  ++  +  G+GLGL + K  V+ +  +  I ST  KGT
Sbjct: 356 DNGPGIAPEHIPHLTERFYRVDKARSRQTGGSGLGLAIVKHAVNHHESRLNIESTVGKGT 415

Query: 803 LIEIIFP 809
               + P
Sbjct: 416 RFSFVIP 422


>gi|163747910|ref|ZP_02155243.1| Signal transduction histidine kinase [Oceanibulbus indolifex
           HEL-45]
 gi|161378818|gb|EDQ03254.1| Signal transduction histidine kinase [Oceanibulbus indolifex
           HEL-45]
          Length = 641

 Score =  298 bits (763), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 99/622 (15%), Positives = 199/622 (31%), Gaps = 31/622 (4%)

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
            +  F  + +       V  +   +         L +     +     A     L     
Sbjct: 8   AEAMFQSIVDNSPFGVWVVDQDGLVVFSNRSAEALLLHRWTKTTGAQIAELLPALSVSNG 67

Query: 260 PLL-TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL---SHRNHPSLSAYF 315
            L  T  +    E       + +    +      ++     F  +      +        
Sbjct: 68  GLTITDLKIGDFENIISLPSDDDARYGEVNLSQFKDAEGRPFTIVNVNEITSRVKSWYAL 127

Query: 316 DEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTK-YKSVDDIEIAGGLSTLLDAP 373
            + E      ++   I  F          A+ ++  L     +            +    
Sbjct: 128 RDQEERWNLALEGSQIGVFESDLRTGAGRASDAWYQLLGICDANGKDSDREWRERIHPDD 187

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
           +          +  R +R+      R+    W        + +   + ++  + +   G 
Sbjct: 188 REEVEALDAECIAGRVERSEAKFRMRVGDNDWR----WMRSILRVTERDEQGDPVRVLGT 243

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
             +           E     L  ++      +A+++ +G  L  N     LFGY    + 
Sbjct: 244 MIDTTPLETALALAEARRAGLEVLVSNAPVAMAVMSLDGTFLLLNDPCYSLFGYAAGQLE 303

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS- 552
           RK       Q T   +   +  +                    +++ + I I        
Sbjct: 304 RKNLWQLSGQKTLENLKAEVEALF-NGDSSISRVEEKYVRPNGEVIDIAIRISIYRPERV 362

Query: 553 ---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                 + M DI+E K+ +              + K+DF+A VSHE+RTPL ++ G    
Sbjct: 363 SDSRLIVQMVDITETKRLE--------------ALKNDFVATVSHELRTPLASVHGAL-R 407

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           +     G     +  +      R+   +  +VNDLLD  K+ +G  ++    V   + V 
Sbjct: 408 LLAGVIGEGAPEQVDKLLGMASRNSERLTQVVNDLLDFQKLTAGHFSVEITQVDAVDIVQ 467

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
           + +   + +AN+  + +      +   I AD + +KQ+  N+LSNA  F+  G  + +  
Sbjct: 468 QTVVDNEPFANKFSVSVLVDAPEHPVIIHADAQRLKQVLTNLLSNAAKFSDCGTTVDVKA 527

Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
                  + + V + G G++    ++  +PF Q         EGTGLGL ++K +V+   
Sbjct: 528 GIDEEAFL-ISVTNRGRGISPEFGKRLFEPFSQQAEHLTRDREGTGLGLAISKELVENMG 586

Query: 790 GKFYIFSTPAKGTLIEIIFPLY 811
           G     S     T   +  PL 
Sbjct: 587 GAIGYSSQINVQTTFWVRLPLA 608



 Score = 58.1 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 44/366 (12%), Positives = 108/366 (29%), Gaps = 32/366 (8%)

Query: 314 YFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
              + E +    VD  P   +V    G + ++N S   L        +      +T    
Sbjct: 4   EHHDAEAMFQSIVDNSPFGVWVVDQDGLVVFSNRSAEAL--------LLHRWTKTTGAQI 55

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
            +L    ++    L  +D         +     +      +    F+ A   P       
Sbjct: 56  AELLPALSVSNGGLTITDLKIGDFENIISLPSDDDARYGEVNLSQFKDAEGRP---FTIV 112

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED- 491
              E      +   +  +  +    LE +  G+   +        + A  +L G    + 
Sbjct: 113 NVNEITSRVKSWYALRDQEERWNLALEGSQIGVFESDLRTGAGRASDAWYQLLGICDANG 172

Query: 492 -ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
               + +   +  +    +     E ++  + ++ E        +     +R I++    
Sbjct: 173 KDSDREWRERIHPDDREEVEALDAECIAGRVERS-EAKFRMRVGDNDWRWMRSILRVTER 231

Query: 551 SS-----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE-----IRTPL 600
                      TM D +  +         +   E   S+    +A +S +     +  P 
Sbjct: 232 DEQGDPVRVLGTMIDTTPLETALALAEARRAGLEVLVSNAPVAMAVMSLDGTFLLLNDPC 291

Query: 601 TAIIGFSE-VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
            ++ G++   ++ +    L   + +E           V  + N    IS++E   +  + 
Sbjct: 292 YSLFGYAAGQLERKNLWQLSGQKTLENLKA------EVEALFNGDSSISRVEEKYVRPNG 345

Query: 660 EPVSLD 665
           E + + 
Sbjct: 346 EVIDIA 351



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 34/376 (9%), Positives = 88/376 (23%), Gaps = 32/376 (8%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            W +D  G +   +      + +   K  G ++ ++   L +         LK  +    
Sbjct: 23  VWVVDQDGLVVFSNRSAEALLLHRWTKTTGAQIAELLPALSVSNGGLTITDLKIGDFEN- 81

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNR----------VDNDPRA 195
                P +    Y  ++L+              R F IV+VN           + +    
Sbjct: 82  -IISLPSDDDARYGEVNLSQ--FKDAEG-----RPFTIVNVNEITSRVKSWYALRDQEER 133

Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255
               L+     + E      +                + +  ++      +     + ++
Sbjct: 134 WNLALEGSQIGVFESDLRTGAGRASDAWYQLLGICDANGKDSDREWRERIH-PDDREEVE 192

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN-----SKESFEYLSHRNHPS 310
                 +         +      + +    +      + +      +     +      +
Sbjct: 193 ALDAECIAGRVERSEAKFRMRVGDNDWRWMRSILRVTERDEQGDPVRVLGTMIDTTPLET 252

Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
             A  +         V   P+   V S  G     N     L  Y +             
Sbjct: 253 ALALAEARRAGLEVLVSNAPVAMAVMSLDGTFLLLNDPCYSLFGYAAGQLERKNLWQ--- 309

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
           L   K  +N   +   L+  D +                  + +         +   +  
Sbjct: 310 LSGQKTLENLKAEVEALFNGDSSISRVE---EKYVRPNGEVIDIAIRISIYRPERVSDSR 366

Query: 430 QNGIEPEDVDTRINKR 445
                 +  +T+  + 
Sbjct: 367 LIVQMVDITETKRLEA 382


>gi|309791782|ref|ZP_07686270.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides
           DG6]
 gi|308226188|gb|EFO79928.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides
           DG6]
          Length = 854

 Score =  298 bits (763), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 120/675 (17%), Positives = 248/675 (36%), Gaps = 68/675 (10%)

Query: 197 GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256
            + L +   H+  +  G  ++++               R+ +  +        +      
Sbjct: 35  QRHLRRHGLHVEGVLSGAEAIQRTATLTDPLLL--LDYRLPDMTAK-EIVLTLQHQQRPA 91

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH-PSLSAYF 315
               +  + +  +  +             + +   L    +++ + ++            
Sbjct: 92  PFIVMTGNGDERIAVEMMKLGARDYLTKSETFLDLLPTVVQQAIQQITTERRLQQAERAL 151

Query: 316 DEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVD---DIEIAGGLSTLLD 371
            E E+         P         G +  AN   L L  Y   +                
Sbjct: 152 RESEHRFSLLFQYIPFGIGLTDLDGQILIANQPLLDLCGYSQEEFQHLHIGTLFADQSEL 211

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
               +       + L R D T   AS   +    + + +  +            + +   
Sbjct: 212 VALYAGTIRPLQLTLLRKDGTHFQASCSYNRTDVSEDQTFLLVVEDMTADIATQQRIHHL 271

Query: 432 GIEPEDVDTRINKRKMEIEVMQL-----CSILEA---TSDGIAIINREGIILS-TNRAVS 482
                 +           +  +L      S+++     +  I   + +  IL+  +  +S
Sbjct: 272 NAVLNGIRRVNRLIAEVSDRNRLIQEACDSLIQTFGYQNAWIVRTDSQRHILAIASAGMS 331

Query: 483 KLFGYPVEDILRKPF---------TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
           +   + ++     P+         +V +     +  +  L  I +   R   +     + 
Sbjct: 332 QPIRHNLDHDQVMPWCSDQVSEPNSVLVMHQQENCRDCPLNTICAEQDRLVSQ--LTYNG 389

Query: 534 KEEKLLSLRIIIKKLPFSSC---YSLTMHDIS----------EWKQEKNKLSHAKKIAEK 580
           K   ++S+ +    +  +     ++    D++          E  Q +  L H++++  +
Sbjct: 390 KNYGVMSVGVPAGFVEDAEDQSLFAELARDLAFALYKIDVEDERGQAERDLQHSQQLLTE 449

Query: 581 ESSH-------------------------KSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
                                        K +FLA +SHE+RTPL AI+G +E+  +  +
Sbjct: 450 ALDALEQRVAERTRELSIANLNLAHAARVKDEFLANMSHELRTPLNAILGRTEMCLDGFY 509

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
           GPL +    +  + I+ SG  +L+++ND+LD++KIESG  +L  + +++DE  + ++ L+
Sbjct: 510 GPLSDG-ATKALHTIEESGRHLLELINDVLDVAKIESGHADLELQLIAVDEVCAASLRLI 568

Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS-TTHTSN 734
              A +K I I       +  I AD R +KQI +N+L+NA+ FTP GG I ++ T     
Sbjct: 569 SQQALKKHIHINQEIDPQVDLIHADARRIKQILINLLNNAVKFTPQGGNIGLTVTGDREQ 628

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
           + V   V DTG+G+   ++ +  +PF QI +S     EGTGLGL L  ++V  + G   +
Sbjct: 629 DLVHFIVWDTGIGIAPDQIGRLFQPFTQIDSSLSRAHEGTGLGLHLVASLVRLHGGSVQV 688

Query: 795 FSTPAKGTLIEIIFP 809
            ST   G+    + P
Sbjct: 689 ESTLGTGSRFSFMLP 703


>gi|117618284|ref|YP_856115.1| sensor protein LuxQ [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
 gi|117559691|gb|ABK36639.1| sensor protein LuxQ [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 657

 Score =  298 bits (763), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 90/455 (19%), Positives = 181/455 (39%), Gaps = 20/455 (4%)

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
           L      +  A   +   R+         R   +      S A         +Q   N+ 
Sbjct: 81  LAPLADVEGWASVMMTGLRAPGFSGVLICRHAVMGTFDLKSKAAMQRCRPLISQALVNIA 140

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
                 E V+ +     ++    +  S     SD     + E  +   +       G   
Sbjct: 141 YRARLQEQVELKT--LALQAGEQRFRSFAGMASDWFWETDTEHRLSYVSAP-----GQQG 193

Query: 490 EDILRKPFTVFLEQNTPSVMNHY--LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
           + ++ +P     +         +     ++ L L     +  +   K  + + +      
Sbjct: 194 DMLVHQPGQSLYDYAYDRRDPEWGKYRRLIGLHLPVRAVRAQVSLAKGPRWMEINAEPCF 253

Query: 548 LPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
               +   Y  T  D+    + + +L+ A+  AE  +  KS FLA ++HEIR+P+ A++G
Sbjct: 254 DAAGAFIGYRGTARDVGNQIRREQELARARDEAEAANRAKSQFLAMMTHEIRSPMNAVLG 313

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
             +++++ +  P    +      +   +  L+  I++D+LD SKIES  +  H E +   
Sbjct: 314 MLDLLQHAQLEP----QQQTLLGHATHAARLLQTIIDDVLDFSKIESHTLEFHCETLQPA 369

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQ 724
           +     I  +   A  K I +R    + +P ++  D   + Q+  N+L NA+ FT  G  
Sbjct: 370 QLCQSLIEPLLAQAGSKGIDLRWRVDDAVPAQLQGDPVRLSQVISNLLGNAVKFTSQGS- 428

Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
           +++  +     ++ + V D+G+G++  +     +PF Q+ +S   R  GTGLGL ++K +
Sbjct: 429 VLLQLSWHEQ-QLRVSVTDSGIGISAEDQALLFEPFSQVDSSATRRFSGTGLGLAISKRL 487

Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819
           V+   G   + S P +G+      P    + P +C
Sbjct: 488 VELMGGSIQLRSAPGEGSCFWFDLP--GMALPCEC 520



 Score = 48.5 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/248 (11%), Positives = 61/248 (24%), Gaps = 11/248 (4%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK 146
           W  D    L  +S    +  G+      G  L D +             L+         
Sbjct: 175 WETDTEHRLSYVSAPGQQ--GDMLVHQPGQSLYDYAYDRRDPEWGKYRRLIGLHLPVRAV 232

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                +        +++ A P +     F G+RG                  R   +   
Sbjct: 233 RAQ--VSLAKGPRWMEINAEPCFDAAGAFIGYRG--TARDVGNQIRREQELARARDEAEA 288

Query: 207 LHEIKKGHSSVEKEKYD-----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
            +  K    ++   +       +        H +++ +  +L  +  H   +L+T    +
Sbjct: 289 ANRAKSQFLAMMTHEIRSPMNAVLGMLDLLQHAQLEPQQQTLLGHATHAARLLQTIIDDV 348

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
           L   +      E            +     L   +      L  R   ++ A        
Sbjct: 349 LDFSKIESHTLEFHCETLQPAQLCQSLIEPLLAQAGSKGIDLRWRVDDAVPAQLQGDPVR 408

Query: 322 TPETVDKC 329
             + +   
Sbjct: 409 LSQVISNL 416


>gi|327537523|gb|EGF24242.1| signal transduction histidine kinase with CheB and CheR activity
            [Rhodopirellula baltica WH47]
          Length = 1347

 Score =  298 bits (763), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 91/571 (15%), Positives = 204/571 (35%), Gaps = 33/571 (5%)

Query: 250  KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
             +  L+  +  L ++ E      E+  + N       +   +         E L   N  
Sbjct: 652  LERELQFTQSHLQSTIEEHQSTNEELQSTNEQLTASNEELQSTNEELHSVNEELYTVNAE 711

Query: 310  SLSA--YFDEGENLTPETVDKCPI-PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
                     E  +     +    +   F+ S   L    P    L      D        
Sbjct: 712  HQRKIDELTELNDDIDNLLTTTNVHTLFLDSRLRLRRFTPRIAELFNLIPQDIGRPINAF 771

Query: 367  STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
            +  L  P L+++                        I+        +   P+        
Sbjct: 772  THRLQDPFLTESIKEVIQT----------EQFVQREIKDENGQWYLLRIFPYLSR---GT 818

Query: 427  NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLF 485
                     +    +     ++    +    +  ++ GI    +     +  +R +  L 
Sbjct: 819  VEGAVVTLVDVTMLQAATEALQKSEERFDLAVRGSNAGIWDWKDVTKEAIWCSRRMYALL 878

Query: 486  GYPV-EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL-GSTKEEKLLSLRI 543
            G    +++    +   +  +  + +   L   L  +    +E     G+T E +   +R 
Sbjct: 879  GRTPTDEMTVSLWEELIHPDDHARVMAALNSHLESNTPFDIEYRMEYGTTNEYRWFHMRG 938

Query: 544  IIKK--LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
              ++      +  + +  D+++ ++ + ++       ++  + +  FLA +SHE+R PL 
Sbjct: 939  SAERKSGRSETRMAGSFEDVTQRREAQQEV-------KQGVARRDQFLAMLSHELRNPLG 991

Query: 602  AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
            A+     ++ ++   P    R       + R    +  +++DLLD+S+I  GK+ L  + 
Sbjct: 992  AVTNAIAIMSSEETKPDVTERA---LGVVKRQLGQMSRLLDDLLDVSRITHGKIELRKQQ 1048

Query: 662  VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
              L + + +A+   Q  A+   + +  +  +    +  D   ++Q+ +N+L+NA+ +TP 
Sbjct: 1049 TDLTKMIEQAVIATQSRADGADLELTVALPSTPLIVDGDPARLEQVTMNLLTNAVKYTPP 1108

Query: 722  GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
            GG+I +       +   L+V+D G G+++ +L +    F Q   +      G G+GL L 
Sbjct: 1109 GGKIRLELK-DDGQNAYLKVQDNGAGISSDKLNEIFSLFYQSDETLDRSNGGMGVGLTLV 1167

Query: 782  KAMVDANMGKFYIFS-TPAKGTLIEIIFPLY 811
            KA+V+ + G     S     G+   +  PL 
Sbjct: 1168 KAVVELHDGSVTAKSDGIGCGSTFTVTLPLS 1198


>gi|220907309|ref|YP_002482620.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7425]
 gi|219863920|gb|ACL44259.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7425]
          Length = 568

 Score =  298 bits (763), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 99/559 (17%), Positives = 183/559 (32%), Gaps = 63/559 (11%)

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFL----LLTKYKSVD 358
                    +       NL    ++         +   +   NP F        K     
Sbjct: 19  DRIPLEQITTLLQPLQPNLELIWLENLTPAIARAADLLILLLNPEFALNLSRQLKTNPDT 78

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
                  +  +        ++   P      +     A      +          T +  
Sbjct: 79  VELPLLYIDAVFLQNSTQTSSPSHPSWN---ETEAALAELVNGYLTLPLHPLTLQTTVRH 135

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILST 477
                 P++      EP    T       E     L   L+A   G    + R G IL  
Sbjct: 136 LVQAGPPKSTLVASAEPCFSCTPTAHGVEEEPNNWLNLALDAAGMGSWDWDLRTGQIL-W 194

Query: 478 NRAVSKLFGYPV--EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
           +    ++FGY         + +   +  +   ++   +   L+   +  LE         
Sbjct: 195 SPFHEEIFGYEPGKPQRTYQDWYNRIHPDDRVLVEKAMATALA--KQSLLEVEYRVRWPN 252

Query: 536 EKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
             +  +    +               + DI++ +  +  L    +   + +  K +FLA 
Sbjct: 253 GHIRWVNATGRYSYDRQGQAIRMVGMLTDITQRRYAEELLKKQAEELTRINQVKDEFLAT 312

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           +SHE+RTPL AI+G+++++++++  P    +  +    I+R+  L  ++V DLLDIS+I 
Sbjct: 313 LSHELRTPLHAILGWAQLLRHRQLDP---EKVNQGLEAIERNARLQTNLVEDLLDISRII 369

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-------RILADLRSV 704
            GK+ L F    L   +  AI+ V   A  K I +        P        +L D   +
Sbjct: 370 QGKLRLIFALFELVPVIRAAIAAVMTTAAAKHIHLSLQIEPCAPKKSQSDYWVLGDSDRL 429

Query: 705 KQIALNILSNAIHFTPSGGQIIISTTH-----TSNE------------EVILRVRDTGVG 747
           +QI  N+L NAI FTP  GQ+ +  +                         ++V DTG+G
Sbjct: 430 QQILWNLLMNAIKFTPPAGQVEVKLSQFCSEPQPRGGENSRDNYFPTTYAKIQVSDTGIG 489

Query: 748 MTNYELEKAMKPFGQIPNSQQIRG--------EGTGLGLPLAKAMVDANMGKFYIFST-P 798
           +    L      F Q  +S                       + + + + G   + S   
Sbjct: 490 IAPENLPFVFDRFYQGDSSSTRAYGGLGLGLAL--------VRHLTELHGGSIEVDSKGE 541

Query: 799 AKGTLIEIIFPLYDTSHPH 817
             G+   ++ PL    +PH
Sbjct: 542 GLGSTFTLVLPLQP--YPH 558


>gi|325108930|ref|YP_004269998.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
            5305]
 gi|324969198|gb|ADY59976.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
            5305]
          Length = 1628

 Score =  298 bits (763), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 108/784 (13%), Positives = 225/784 (28%), Gaps = 83/784 (10%)

Query: 90   DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
            D  G + E +    +  G    + IG    ++ D           + +K    ++ +   
Sbjct: 694  DQEGNIVEANPFACQMHGYEYGEFIGKSASEIIDKQSELELTRFFERVKSGTPFFDQGIH 753

Query: 150  WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL-------DK 202
               +G+ ++V I  + L    +    +      +V               L        +
Sbjct: 754  VRQDGSPIHVEIQGSGLQYRGKPHLLT------VVRDVTERRQAERQFLELTQESERQRR 807

Query: 203  KFSHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
             +  +         V    +                 +  +        + D  ++    
Sbjct: 808  LYDTILSNALDQVYVFDLDHRFSYANQALLNMWGKSWEEAIGKNCRELGYPDWQVRKHSE 867

Query: 260  PLLTSEESSLPEQEDFHTINLNQYT-----KKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
             L     +  P + +      N             G        +       +       
Sbjct: 868  ELNQVILTKQPIRGEAPVTGTNGRRIYDYIFYPVLGVDGEVEAIAGTSRDVTDRKITENN 927

Query: 315  FDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
              + E    +  D  P   +    +G + Y N  +   T           G  S      
Sbjct: 928  LRQSEARFRQLADAMPQIVWTATPNGYIDYYNNRWYEFTGLAKN----QHGEDSWNRIMH 983

Query: 374  KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
                 +  +       + T      RL+  +    +            ++  + +   G 
Sbjct: 984  SEDAAHWKEVWNRSVDEGTAFDIEFRLYNRRT--RSFEWYLGRAIPAQDEDGDVVRWFGT 1041

Query: 434  EPEDVDTRINKR---KMEIEVMQL-------CSILEATSDGI-----------AIINREG 472
              +    + N++    +     +L        ++ E     +              +  G
Sbjct: 1042 FTDINRQKRNEQISDFLAEASSRLVDYFSDESTMQEVARIAVPDFADWCSIDMLEQDGRG 1101

Query: 473  IIL------------------------STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
              +                          N  + K        +  +      E  +  V
Sbjct: 1102 RRVALVHAEPDDEKLQSQLADLYPPEFDANSILYKTLKTSGAHLADQ--IHGDEPVSRLV 1159

Query: 509  MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568
                  +     +R  L    +   +    +S  +      F +       D++      
Sbjct: 1160 QGDEWRKTQPQLIRSVLCVPLISRNRMLGAISFGMARSGRYFDTEDLQAAEDVASRFTVA 1219

Query: 569  NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
             + +            K +FLA ++HE+R PL  I    +++       L +        
Sbjct: 1220 MENTLLYDQLRATDRRKDEFLAMLAHELRNPLAPIRSGLDLL------TLESKEDQPVLL 1273

Query: 629  YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
             +      ++ +V+DLLD+S+I  GK++L  +   L E +  A+  V+   +EK+  +  
Sbjct: 1274 VMKEQVEHLVRLVDDLLDVSRIMRGKIDLRKKTTELKEIIERAVEAVRWTFDEKQQTLTV 1333

Query: 689  SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748
            S       I  D   + Q+  N+L+NA  +T  GG I +      + EV +RV D G+G+
Sbjct: 1334 SVPEESLPIFVDPVRLVQVVSNLLNNASKYTDPGGNIDLKVEKAED-EVRVRVLDNGIGI 1392

Query: 749  TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEII 807
                L      F Q   +      G G+GL L + +V+ + G   +FS  P  G+     
Sbjct: 1393 EPELLPNVFDLFTQSSRALDRAQGGLGIGLTLVQNLVEMHRGSVSVFSDGPGLGSEFLFQ 1452

Query: 808  FPLY 811
             PL 
Sbjct: 1453 LPLS 1456



 Score =  127 bits (319), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 58/554 (10%), Positives = 152/554 (27%), Gaps = 47/554 (8%)

Query: 82  TVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN 141
           T    W   + G +   S       G    +  G    +       +  +   +    ++
Sbjct: 267 TAEVVWTTSSTGEVVNDSPTWRAFTGQTLEEFQGSGWVNALHPDDRERTHLAWEQ-ATRD 325

Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
               +           Y    +  +P+ +   E   + G  I      +       K  +
Sbjct: 326 RSLFEMEYRLQSAQGGYRWTKVRGVPVLNDRGEVLEWVGMNI--DITHERLALESLKASE 383

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSP-------PPHLRMKNKVSSLTEYYAHKDDVL 254
           +++  + E           + D               P     +    L   +    + +
Sbjct: 384 QRYELVAEASNDAIWDWDLETDQILWNIGLQRLFGYAPDKIDVSINWWLDHIHEDDRERV 443

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY-------------FGTLQNNSKESFE 301
           +     +  + E     +  F   + +                     G++ + +++   
Sbjct: 444 RESLDEVHQNGEERWDAEYHFERADGSFAYVYDRGRVVIQNGKAVRMVGSMLDLTEQKQT 503

Query: 302 YLSHRNHPSL---SAYFDEGENLTPETVDKCPIPF------FVYSHGNLFYANPSFLLLT 352
             +      L    A   E  + T    +             +     ++  N     L 
Sbjct: 504 EQAMAERSRLADLRADVSECLSSTDSLEETLQTCVRSILERLLACSVRIWLRNEETGELE 563

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM----------LYRSD----RTCIAASA 398
                DDIE       L+   +L     +   +          L   D    R   A + 
Sbjct: 564 LTTVNDDIEAGISDLPLMTHDRLPVQKIVDEGVPFSSNDVCTDLQIVDENVCRPVRAFAG 623

Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458
               I+ +    + +            +  P      + +  +  +  ++    Q   I 
Sbjct: 624 YPLIIEGHSMGVIGVFTSGVISPATLKDLAPLADTIAQYIQRKRGEDTLQEREQQYRGIF 683

Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
           EA++D I I ++EG I+  N    ++ GY   + + K  +  +++ +   +  +   + S
Sbjct: 684 EASNDAILIFDQEGNIVEANPFACQMHGYEYGEFIGKSASEIIDKQSELELTRFFERVKS 743

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578
                  + I +        + ++    +          + D++E +Q + +     + +
Sbjct: 744 -GTPFFDQGIHVRQDGSPIHVEIQGSGLQYRGKPHLLTVVRDVTERRQAERQFLELTQES 802

Query: 579 EKESSHKSDFLARV 592
           E++       L+  
Sbjct: 803 ERQRRLYDTILSNA 816



 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 48/410 (11%), Positives = 123/410 (30%), Gaps = 25/410 (6%)

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGH------SSVEKEKYDIFSQQSPPPHLRMKNKVS 241
           R         K L    S + +            ++     D+          R   +V 
Sbjct: 117 RAFATEDRRRKELQTLTSSIADAVIATNLEGRIVAMNPVAEDLTEWSQRDAFGRALGEVF 176

Query: 242 SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301
                    +    T +  L       + +     + +  +   +     +++N      
Sbjct: 177 QGRNLDDPLEADALTAEATLTNDGFGQI-KPMLLISRSGREVPVETNSAPIKDNGGLVTG 235

Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY-----SHGNLFYANPSFLLLTKYKS 356
            +    + S     +  +    E      I          S G +   +P++   T    
Sbjct: 236 AVFIFRNISERLKAERQQRTNEERFRALIIATAEVVWTTSSTGEVVNDSPTWRAFTGQT- 294

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
           +++ + +G ++ L    +   + A +       DR+      RL + Q            
Sbjct: 295 LEEFQGSGWVNALHPDDRERTHLAWEQAT---RDRSLFEMEYRLQSAQ---GGYRWTKVR 348

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476
                N   E +   G+  +    R+    ++    +   + EA++D I   + E   + 
Sbjct: 349 GVPVLNDRGEVLEWVGMNIDITHERLALESLKASEQRYELVAEASNDAIWDWDLETDQIL 408

Query: 477 TNRAVSKLFGYPVE--DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
            N  + +LFGY  +  D+    +   + ++    +   L E+      +  +        
Sbjct: 409 WNIGLQRLFGYAPDKIDVSINWWLDHIHEDDRERVRESLDEVHQNGEER-WDAEYHFERA 467

Query: 535 EEKLLSLRII---IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE 581
           +     +      + +   +     +M D++E KQ +  ++   ++A+  
Sbjct: 468 DGSFAYVYDRGRVVIQNGKAVRMVGSMLDLTEQKQTEQAMAERSRLADLR 517



 Score =  103 bits (256), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 44/397 (11%), Positives = 103/397 (25%), Gaps = 27/397 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG--- 145
            +  G +  ++               G  L +V    ++D +    D L  + T      
Sbjct: 143 TNLEGRIVAMNPVAEDLTEWSQRDAFGRALGEVFQGRNLD-DPLEADALTAEATLTNDGF 201

Query: 146 --KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                +  I  +   VP++  + PI       +G     I              +  +++
Sbjct: 202 GQIKPMLLISRSGREVPVETNSAPIKDNGGLVTGA--VFIFRNISERLKAERQQRTNEER 259

Query: 204 FSHLHEIKKGHSSVEKEKYDIF---SQQSPPPHLRMKNKVSSLTEYYAHKDDV-LKTEKY 259
           F  L               ++              ++    S      H DD       +
Sbjct: 260 FRALIIATAEVVWTTSSTGEVVNDSPTWRAFTGQTLEEFQGSGWVNALHPDDRERTHLAW 319

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE-- 317
              T + S    +    +        K     + N+  E  E++      +      E  
Sbjct: 320 EQATRDRSLFEMEYRLQSAQGGYRWTKVRGVPVLNDRGEVLEWVGMNIDITHERLALESL 379

Query: 318 --GENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVD-DIEIAGGLSTLLDA 372
              E       +      + +      +   N     L  Y     D+ I   L  + + 
Sbjct: 380 KASEQRYELVAEASNDAIWDWDLETDQIL-WNIGLQRLFGYAPDKIDVSINWWLDHIHED 438

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
            +     ++  V     +       A  H  + +   +            Q  + +   G
Sbjct: 439 DRERVRESLDEV---HQNGEERW-DAEYHFERADGSFAYVYDRGRVVI--QNGKAVRMVG 492

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469
              +  + +  ++ M  E  +L  +    S+ ++  +
Sbjct: 493 SMLDLTEQKQTEQAM-AERSRLADLRADVSECLSSTD 528



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 30/291 (10%), Positives = 76/291 (26%), Gaps = 17/291 (5%)

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
              A  D                    +  G +   NP    LT++   D    A  L  
Sbjct: 117 RAFATEDRRRKELQTLTSSIADAVIATNLEGRIVAMNPVAEDLTEWSQRDAFGRA--LGE 174

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
           +     L D      +    +         +   +       + +        +      
Sbjct: 175 VFQGRNLDDPLEADALTAEATLTNDGFGQIKPMLLISRSGREVPVETNSAPIKDNGGLVT 234

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
               I     +    +R+      +  +++ AT++ +   +  G +++ +       G  
Sbjct: 235 GAVFIFRNISERLKAERQQRTNEERFRALIIATAEVVWTTSSTGEVVNDSPTWRAFTGQT 294

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
           +E+     +   L  +       +L    +   R   E      + +      ++    +
Sbjct: 295 LEEFQGSGWVNALHPDDRE--RTHLAWEQATRDRSLFEMEYRLQSAQGGYRWTKVRGVPV 352

Query: 549 PFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
                    +     DI+  +     L        K S  + + +A  S++
Sbjct: 353 LNDRGEVLEWVGMNIDITHERLALESL--------KASEQRYELVAEASND 395



 Score = 73.5 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 16/156 (10%), Positives = 48/156 (30%), Gaps = 7/156 (4%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +      +    +L ++  + +D +   N EG I++ N     L  +   D   +     
Sbjct: 116 KRAFATEDRRRKELQTLTSSIADAVIATNLEGRIVAMNPVAEDLTEWSQRDAFGRALGEV 175

Query: 501 LEQ---NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL- 556
            +    + P   +    E    +      K  L  ++  + + +      +  +      
Sbjct: 176 FQGRNLDDPLEADALTAEATLTNDGFGQIKPMLLISRSGREVPVETNSAPIKDNGGLVTG 235

Query: 557 ---TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
                 +ISE  + + +    ++         ++ +
Sbjct: 236 AVFIFRNISERLKAERQQRTNEERFRALIIATAEVV 271


>gi|160893712|ref|ZP_02074496.1| hypothetical protein CLOL250_01266 [Clostridium sp. L2-50]
 gi|156864697|gb|EDO58128.1| hypothetical protein CLOL250_01266 [Clostridium sp. L2-50]
          Length = 583

 Score =  298 bits (763), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 91/353 (25%), Positives = 159/353 (45%), Gaps = 11/353 (3%)

Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
            I+  N    + F   V D   K      +      +N + T   +   ++        +
Sbjct: 95  QIVDANEIFGEYFKLDVSDYTGKNLKES-KIEVLQDINAWFTAYNNSGTKEGDLMDVEIT 153

Query: 533 TKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
              E L  +   +     +   ++ + DI++ K  +NKLS A   A      +++FLA +
Sbjct: 154 M--ESLQKVFNTVMYKSEADYINMVVIDITDQKDTENKLSKAIVDANAAYKTQAEFLANM 211

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHEIRTP+  I+G    ++           Y +         + +L ++ND+LDISK+E+
Sbjct: 212 SHEIRTPINGILGM---LQLTLMADDLQADYRDNLVTAKNCADTLLRLINDILDISKLEA 268

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNI 711
           GK  +  E   + +A+ E ++     AN K + +  SF NNIP+ +  D + ++Q+   +
Sbjct: 269 GKYKIKEETFDIKQAIEETVAAQVPLANNKGLQLDCSFGNNIPKLVKGDGQRIQQVLNCL 328

Query: 712 LSNAIHFTPSGG-QIII-STTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQ 767
           LSNAI FT  G  ++ I S       +V +R  V DTG+G++   + K    F Q+ +S 
Sbjct: 329 LSNAIKFTSEGSVRVKIASMDMEGENKVKIRMAVADTGIGISEANMSKLFIRFSQVDSSD 388

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820
             R  G+GLGL + K +V+   G   + S    G+   +  P+       D +
Sbjct: 389 TRRYGGSGLGLVITKQIVELMGGNIQVQSKEDIGSTFIVEVPMKVVKASDDAL 441


>gi|116749830|ref|YP_846517.1| multi-sensor hybrid histidine kinase [Syntrophobacter fumaroxidans
           MPOB]
 gi|116698894|gb|ABK18082.1| multi-sensor hybrid histidine kinase [Syntrophobacter fumaroxidans
           MPOB]
          Length = 991

 Score =  298 bits (763), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 119/770 (15%), Positives = 239/770 (31%), Gaps = 104/770 (13%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK- 146
            +DA G +             Y   +IG  L D   I  +         L RQ T     
Sbjct: 137 RVDADGRIMYTMP--------YTEGVIGADLSDQVHIRDLM--------LTRQVTLSDVF 180

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHV--NRVDNDPRALGKRLDKKF 204
           T +  +    L+VPI            EF G  G  I +    +    P  +G       
Sbjct: 181 TAVQGVRAMALHVPI--------RHKGEFRGSIGIFIPYEKLTKEYLAPIQIGANGHAWI 232

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHL--RMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
              +  +       +    +F   S  P +   ++  +        + D++++  +  ++
Sbjct: 233 ISRNGTELYSPVAGRTGSSVFEASSRFPSVISMVEKMLKGEEGVTTYSDEIVENGRTEVI 292

Query: 263 TSEESSLPEQE-----------------------DFHTINLNQYTKKQYFGTLQNNSKES 299
           T     LP                              + +             + +K  
Sbjct: 293 TRHAVFLPVHMANTFWSIVVSTPEDEVLALMKGFRNRWLLMVVILMAASLIYAYSMAKAW 352

Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVD 358
                                L    ++  P+   + +  G +   NP+   +  +   +
Sbjct: 353 AIIREENRREQTEKTLRGTNQLLNALIESSPLGINITAPDGTVKLWNPASERIFGWSREE 412

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
            ++               +  A          +     +      + +    + +     
Sbjct: 413 IVDKP-------LPTLTPEIEAEFNTYFTALLQGQAYTALETRRKRKDG-TVIDVNLSGA 464

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
              +     +   GI  +    +      E E ++L S +E  ++ I I + EG I   N
Sbjct: 465 PVRDDTGRIIGGMGIIEDITGRKKT----EEERVRLASAVEQAAEVIFITDHEGTIQYVN 520

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
            A  ++ GY   + L +   +             +   L+    +T     +   K   L
Sbjct: 521 PAFERITGYEKGEALHRNVRILASGKHSKDFYQQVDHTLARG--ETWAGRFINRKKNGSL 578

Query: 539 LSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
             +   I  +  +S     +     D+++    + +L  A+K+              ++H
Sbjct: 579 FEVEATISPVRDASGKITNHVAVQRDVTQEVGLERQLRQAQKM-----EAIGTLAGGIAH 633

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           +    L  I+G++E+               +    + ++G+   ++V  +L  S+     
Sbjct: 634 DFNNILGIILGYTEM---GMLKIDNRDIAEKSLAEVLKAGHRAKELVRQILAFSR----H 686

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714
                 PV     V EA+ L++       I I  + + N   ++AD   + QI +N+ +N
Sbjct: 687 SEYELRPVQASLIVKEALRLLRSSLPS-TIEISRNIS-NTGVVIADPSQIHQIVMNLCTN 744

Query: 715 AIHFT-PSGGQIIISTT--------------HTSNEEVILRVRDTGVGMTNYELEKAMKP 759
           A H     GG + ++                 T    + L VRDTG GM    +E+   P
Sbjct: 745 AHHAMREKGGVLSVTMEDTELDESAVAQCGGVTPGPYLRLTVRDTGQGMDASIMERIFDP 804

Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +    +    +GEGTGLGL +   +V    G   + S   KG+   +  P
Sbjct: 805 YFTTKD----QGEGTGLGLAVVHGIVKNLGGVIAVESELGKGSAFHVFLP 850



 Score = 65.4 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/177 (10%), Positives = 56/177 (31%), Gaps = 5/177 (2%)

Query: 26  SKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRF 85
           +++K  +G   + +    P  D   +        E ++     + E   +   + +    
Sbjct: 447 TRRKRKDGTVIDVNLSGAPVRDDTGRIIGGMGIIEDITGRKKTEEERVRLASAVEQAAEV 506

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI-DPNNHIGDLLKRQNTWY 144
            +  D  G ++ ++    +  G    + +   +  ++   H  D    +   L R  TW 
Sbjct: 507 IFITDHEGTIQYVNPAFERITGYEKGEALHRNVRILASGKHSKDFYQQVDHTLARGETWA 566

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
           G+       G+   V   ++  P+   + + +      +      +       ++  
Sbjct: 567 GRFINRKKNGSLFEVEATIS--PVRDASGKIT--NHVAVQRDVTQEVGLERQLRQAQ 619


>gi|322417779|ref|YP_004197002.1| multi-sensor signal transduction histidine kinase [Geobacter sp. M18]
 gi|320124166|gb|ADW11726.1| multi-sensor signal transduction histidine kinase [Geobacter sp. M18]
          Length = 1084

 Score =  298 bits (763), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 77/249 (30%), Positives = 129/249 (51%), Gaps = 3/249 (1%)

Query: 566  QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
            +   +L  A     +    +SDFL+ VSHE+RTPLT+I  FSE++   R+      +  +
Sbjct: 809  RRTAELEQANTRLLELDRLRSDFLSTVSHELRTPLTSIRSFSEILL--RYEVDDPEKRRK 866

Query: 626  YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
            +   I      +  ++NDLLD+S+IE+G++ LH EP+ LD   + A+   Q    EK + 
Sbjct: 867  FVAIIASEAERLTRMINDLLDLSRIEAGRLELHPEPLELDAVFARAVGTAQPLMAEKGLQ 926

Query: 686  IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
             R      +P++LAD   + Q+  N+LSN++ F+P GG I +       E  ++ V D G
Sbjct: 927  SRVEIEAGLPQVLADADRMHQVLTNLLSNSVKFSPEGGTIRLG-GRRQGEFALISVTDQG 985

Query: 746  VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
             G+    LE+  + F Q+   Q+    GTGLGL +++ +V+   G+ ++ S    G +  
Sbjct: 986  PGIPADRLEQVFERFHQVRTPQKSHALGTGLGLTISREIVEKMGGRIWVESELGAGAVFS 1045

Query: 806  IIFPLYDTS 814
               PL   +
Sbjct: 1046 FTVPLLQEA 1054


>gi|322419279|ref|YP_004198502.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M18]
 gi|320125666|gb|ADW13226.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M18]
          Length = 774

 Score =  298 bits (763), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 102/640 (15%), Positives = 188/640 (29%), Gaps = 51/640 (7%)

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247
               D   + + L ++FS ++E  +    +E    D            M           
Sbjct: 12  DSPEDAILIVRHLQREFSPVYERVETPDEME-AALDRGGWHLVISDYVMPKFSGLAALKL 70

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
            H   +            E +    E       +   K +    +    +E  E +  R 
Sbjct: 71  LHDRAIDLPFIMVSGQMGEDA--AVEAMRAGAHDYLIKDRLSRLIPAIKRELREAVVRRE 128

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
                      E      V++  +  F+       YANP F  +  Y   + IE      
Sbjct: 129 RRMAEEALSATEARFQSLVEQSLVGIFMLQQDIFIYANPKFGAIFGYGPEELIEKRSLPE 188

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
            +       D   +    L                 + +      +             +
Sbjct: 189 LVTVD----DQIRVMTQFLRPLKEGSEPLHFFFRGRRRDGAT---IDLEVNGTRTLINGS 241

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
               G   +  + R  + ++     +L   +E +   + I +  G +   N    ++ GY
Sbjct: 242 GAVIGTLLDITERRRAEAEL----SKLWRAVEQSPVSVVITDLRGHMEYVNPKFIEVSGY 297

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
             ++++ K   +    N        L   +                K   L      I  
Sbjct: 298 TEKELIGKKTNILKSGNMNEEFYRDLWGTICSGKEW--HGELHNRKKNGALFWESCSISA 355

Query: 548 LPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
           +         +     DI+E K   ++L   +K+              ++H+    LT I
Sbjct: 356 VKNPEGQISHFVGVKEDITERKLAIDQLRQVQKM-----EAVGQLAGGIAHDFNNLLTVI 410

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
            G+S ++              + A  I R+G    D+   LL  S+    +  +    + 
Sbjct: 411 NGYSTLLIRGLDQSSP---MRKEAEQILRAGERAADLTRQLLSFSR----RQIMEPRVLD 463

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
           ++  V     +++    E  I + T    +   I  D   ++QI +N+  NA   + +GG
Sbjct: 464 INRQVKSVQKMLERLIGEH-IRLVTDLHPDAGLIKMDPGQLEQIVMNLTVNARDASDTGG 522

Query: 724 QIIISTT--------------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
            I + T                 +   V L V D G GMT    +   +PF         
Sbjct: 523 VITVETANCELDAGFTHLHPGSQTGSYVRLSVTDRGQGMTEEVKQHLFEPFFTTK----E 578

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            G GTGLGL     +V    G   + S P +G    I  P
Sbjct: 579 MGRGTGLGLATVYGIVKQCCGYIQVISEPGQGARFNIYLP 618



 Score = 45.0 bits (105), Expect = 0.049,   Method: Composition-based stats.
 Identities = 43/458 (9%), Positives = 114/458 (24%), Gaps = 36/458 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTWYGK 146
            D  G+++ ++ +  +  G    ++IG +  ++    +++      +   +     W+G+
Sbjct: 278 TDLRGHMEYVNPKFIEVSGYTEKELIGKK-TNILKSGNMNEEFYRDLWGTICSGKEWHGE 336

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                  G   +    ++A  + +   + S F   G+              +++ K  + 
Sbjct: 337 LHNRKKNGALFWESCSISA--VKNPEGQISHF--VGVKEDITERKLAIDQLRQVQKMEAV 392

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
                            I    +       ++           +      +    L S  
Sbjct: 393 GQLAGGIAHDFNNLLTVINGYSTLLIRGLDQSSPMRKEAEQILRAGERAADLTRQLLSFS 452

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
                +     IN    + ++    L          L        +           + V
Sbjct: 453 RRQIMEPRVLDINRQVKSVQKMLERLIGEHIRLVTDLHPD-----AGLIKMDPGQLEQIV 507

Query: 327 DKCPIPFFVYSHGNLFYANPSFLLLT-KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
               +             N      T    +V+              P     + ++  +
Sbjct: 508 MNLTV-------------NARDASDTGGVITVETANCELDAGFTHLHPGSQTGSYVRLSV 554

Query: 386 LYRSDRTCIAASARLH-----TIQWNRENSLAMTFIPFEKANQFPENM----PQNGIEPE 436
             R           L      T +  R   L +  +                P  G    
Sbjct: 555 TDRGQGMTEEVKQHLFEPFFTTKEMGRGTGLGLATVYGIVKQCCGYIQVISEPGQGARFN 614

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
               R  +        QL   ++     + + +  G++        ++ G+ V +     
Sbjct: 615 IYLPRTFQEVEPQSRQQLDEAIDTAHTILVVEDEPGVLNLVVHT-LRMRGFKVLETTDPE 673

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
             + L +     ++  LT+++   +        L   K
Sbjct: 674 QGITLFEEHADEIDMLLTDVVMPFMSGPTLADLLLRKK 711


>gi|89896368|ref|YP_519855.1| hypothetical protein DSY3622 [Desulfitobacterium hafniense Y51]
 gi|89335816|dbj|BAE85411.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 592

 Score =  298 bits (763), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 75/368 (20%), Positives = 154/368 (41%), Gaps = 37/368 (10%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
             +E+E  +L   ++  ++GI  I+ EG     N ++ ++FG    +             
Sbjct: 250 SALELERNRLKQTIDGLAEGIVAIDNEGNFTHINPSIQRIFGKNPGEGRMSLIPSQELWE 309

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHD 560
               +                +  T+  + + K + LR+ I  L       +       D
Sbjct: 310 DFDAVLA--------------QGYTIVRSLQWKQMLLRVTICPLEDETHHIAGVVGLFRD 355

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I+E ++ +                + +++A VSHE+RTP++A+   SE + +        
Sbjct: 356 ITESERLEQT--------------RREYVANVSHELRTPVSALRALSETLADGMVS--DE 399

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
                Y N++      +  ++NDLL +S+++S    +H E   ++E         +  A 
Sbjct: 400 ETKNRYYNHMLHETMRLTRLINDLLTLSRLQSHTEQVHTEAFLINEVTGSVAERYKPLAQ 459

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
           +K +    S   +  ++++++  V+Q+ + +L NAI +T SGG+I + T     + V + 
Sbjct: 460 KKGLRFDYSPLVHDLKVMSNMDLVEQVLIILLDNAIKYTQSGGRISLGTVL-DKDRVKVS 518

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V DTG+G+   +L    + F +   +     +GTGLGL +A  +      + Y+ S   +
Sbjct: 519 VADTGMGIAPEDLPHIFERFYKADKAHS--TQGTGLGLAIAFEISQRLGEEIYVESHLNE 576

Query: 801 GTLIEIIF 808
           G+      
Sbjct: 577 GSTFTFTL 584



 Score = 45.4 bits (106), Expect = 0.035,   Method: Composition-based stats.
 Identities = 33/332 (9%), Positives = 75/332 (22%), Gaps = 50/332 (15%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGM----RLCDVSDILHIDPNNHIGDLLKRQNTWY 144
           ID  G    I+  + +  G    +  G        ++ +            +L +  T  
Sbjct: 273 IDNEGNFTHINPSIQRIFGKNPGE--GRMSLIPSQELWEDFD--------AVLAQGYTIV 322

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
             +  W        + + +   P+       +G    G+              +      
Sbjct: 323 R-SLQWK------QMLLRVTICPLEDETHHIAGV--VGLFRDITESERLEQTRR------ 367

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
                                S+      +  +   +    +  H+   L      LLT 
Sbjct: 368 -EYVANVSHELRTPVSALRALSETLADGMVSDEETKNRYYNHMLHETMRLTRLINDLLTL 426

Query: 265 EESSLPEQEDFHTINLNQY---TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
                  ++      L      +  + +  L       F+Y    +   + +  D  E +
Sbjct: 427 SRLQSHTEQVHTEAFLINEVTGSVAERYKPLAQKKGLRFDYSPLVHDLKVMSNMDLVEQV 486

Query: 322 TPETVDKCPIPFFVYSHGNLFYAN--------PSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
               +D      +  S G +             S        + +D+           A 
Sbjct: 487 LIILLDNA--IKYTQSGGRISLGTVLDKDRVKVSVADTGMGIAPEDLPHI--FERFYKAD 542

Query: 374 KLSDNNAIK-----PVMLYRSDRTCIAASARL 400
           K                + +     I   + L
Sbjct: 543 KAHSTQGTGLGLAIAFEISQRLGEEIYVESHL 574


>gi|255514120|gb|EET90383.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus
           Micrarchaeum acidiphilum ARMAN-2]
          Length = 745

 Score =  298 bits (763), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 87/390 (22%), Positives = 174/390 (44%), Gaps = 21/390 (5%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
           ++ +E     L   + ATSD +  ++  G I   N +  ++ GY  E++  K      ++
Sbjct: 362 EKLVENAKSNLDDFVNATSDPVISVDNLGYIKKVNLSAERILGYNREELNGKEIKSIYKE 421

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDI 561
           N   +++  +  + +               K++ L+     I+ +  S    Y + + ++
Sbjct: 422 N--EILDRDIAYVRNGGK--IDGTYVNLIKKDQSLMPAVHSIRSINESGNADYIILLKEL 477

Query: 562 SEWKQEKNKLSHAKKIAEKESS------HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
              +  + +  + + +  +          KS F++ ++HE++TPLT I+GF++++ +  F
Sbjct: 478 ETKQMIERQEEYLRALDTRIKRSESVGQLKSQFISDIAHELKTPLTNIMGFTKLLYDGEF 537

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE-AISL 674
           G +      EY   I    + ++ I+  +LD +K+++ ++ L    +S+ E  +  +I  
Sbjct: 538 GEIP-EEQKEYLKTILDESDRLMFIIMQVLDAAKLDARRVKLDLTEISMTELYNNPSIRA 596

Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
           ++  A  K +      + + P + ADL  + Q+  N++ NAI FT  GG I ++    S 
Sbjct: 597 LEESATNKGLAFDWIVSYDTPIVQADLSRIIQVFTNLIGNAIKFTEKGG-IKVNIYKKSR 655

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQI--PNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
             +   V DTG+G+   +  K  + F Q    N     G GTGLGL + K +V  + GK 
Sbjct: 656 NTIACEVIDTGIGIGEEDKRKIFRKFYQASKKNLTIQNGAGTGLGLAITKEIVSLHHGKI 715

Query: 793 YIFSTPAKGTLIEIIFPLYDT----SHPHD 818
              S   KG+      P+       S P +
Sbjct: 716 KFESELGKGSKFWFTIPIKQNPNRKSRPQE 745


>gi|258622613|ref|ZP_05717634.1| sensor histidine kinase LuxQ [Vibrio mimicus VM573]
 gi|258585069|gb|EEW09797.1| sensor histidine kinase LuxQ [Vibrio mimicus VM573]
          Length = 857

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 79/371 (21%), Positives = 159/371 (42%), Gaps = 21/371 (5%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           R++  +  Q   +         + N  G ++  N +    F              FL + 
Sbjct: 350 RRLANKEKQFEDLFNFALSPTMLWNTAGRLIRMNPSAQIQFLREDAQ------NHFLFEI 403

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT-MHDISE 563
               +   +T          +         + ++    +    +       +T   D++ 
Sbjct: 404 LERQLLPMITYAAQGKNPSEVTTEV-----DGRVYRWNLSPIMVEGQIISIITQGQDVTS 458

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + + +   A++ AE+ +  +++FLA++SHE+RTPL  ++G S+++K            
Sbjct: 459 IAEAEKQSQVARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRTPL----TDEQ 514

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            E+   +  SG  +L ++ND+LD S++E GK  +      L E V     + +   N+K 
Sbjct: 515 REHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKSEFRLKELVCAIDRIYRPLCNDKG 574

Query: 684 ILIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EVIL 739
           I +       +   + +D   + QI  N+L+NAI FT  G  I ++      +   ++++
Sbjct: 575 IELVVESNITSATLVRSDQIRINQILFNLLNNAIKFTHQGS-IRVALELIEGDPLAQLVI 633

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
           +V DTG+G+   +L    +PF Q  ++      G+GLGL +  ++V+   G+ ++ S   
Sbjct: 634 QVMDTGIGIREEDLTVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHVSSEYG 693

Query: 800 KGTLIEIIFPL 810
            GT  EI  P+
Sbjct: 694 HGTRFEIQLPI 704


>gi|171319008|ref|ZP_02908135.1| Hpt sensor hybrid histidine kinase [Burkholderia ambifaria MEX-5]
 gi|171095763|gb|EDT40716.1| Hpt sensor hybrid histidine kinase [Burkholderia ambifaria MEX-5]
          Length = 1088

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 108/556 (19%), Positives = 198/556 (35%), Gaps = 41/556 (7%)

Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330
            Q    T+             +   +       +  +         E +      +D   
Sbjct: 179 TQPAIPTLLRPLRWLPPAINPVTGRTVVRLASPALSDGKPFVVLVTEYD------LDSLT 232

Query: 331 IPFFVYS-HGNLFYANPSFLLLTKYKS-------VDDIEIAGGLSTLLDAPKLSDNNAIK 382
            P  V    G     +    L+T           +D +  +   S    A    +     
Sbjct: 233 APLAVDHYDGTFLVVSKEGKLITTASRHVSNQSLIDRVMQSHVASAF--ADGQRETYRDG 290

Query: 383 PVMLYRSDRTCIAASARLHTIQ--WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
              +               +     N       +             +     +      
Sbjct: 291 VFTISDQLGNTGWLLVYAFSWHDIANGTRLQLASAAGTTGLVLIALWVFVILFDRRVFVP 350

Query: 441 RINKRKMEIEVMQL-CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
            + + +   E  QL  ++++    G+ +I  +            L   PV     K   V
Sbjct: 351 VLVRSRRVFESEQLSRTLIDTAPVGLGLIAID--------TGEPLLRSPVMAETAKRVMV 402

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT-- 557
               + P++    +           L    + + ++   + L +   +  +     L   
Sbjct: 403 ----DAPTLSAELVRRHAQQPQTGVLRYDRIFALRDGGQIDLAVSSARARYRGTDVLVTA 458

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
             D++E  Q  ++L +AK+ AE  ++ KS F+A +SHEIRTPL AI+G  E++       
Sbjct: 459 FTDVTEKNQLAHELRNAKQAAESANAAKSAFVAAMSHEIRTPLNAILGNLELLS----LA 514

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
             +       + I  S + +L I++D+LD SKIE+G+M          E    A+++   
Sbjct: 515 TLDAEQRNRLSTIRTSSDGLLAIISDILDFSKIEAGEMAFERIDFDCVELTGRALAMFAP 574

Query: 678 YANEKRILIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNE 735
            A  K + +   F  ++   + +D   + QI  N+LSNA+ FT +G   + ++T +  + 
Sbjct: 575 GARAKGLRLYGQFDVDSALSMNSDPVRIGQIINNLLSNAVKFTSAGHVTLRLATEYAEDG 634

Query: 736 E--VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
              +++ V DTG+GMT  + E+    F Q   S   R  GTGLGL L K +  A  G  +
Sbjct: 635 ATLLLMSVEDTGIGMTPEQQERLFSAFSQGDASIHRRFGGTGLGLALCKLLAQALGGSIH 694

Query: 794 IFSTPAKGTLIEIIFP 809
             STP  G+   +  P
Sbjct: 695 AESTPNVGSRFTVRLP 710


>gi|47679006|dbj|BAD20690.1| probable two-component sensor [Pseudomonas sp. BS]
          Length = 1211

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 128/697 (18%), Positives = 246/697 (35%), Gaps = 49/697 (7%)

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND--PRALGKRLDKKFSHL 207
              + T L   ID+A   I          R  G   +   +         + + +     
Sbjct: 239 LRTDNTRLQRLIDVAIEAIGDDPLRNLAKRWVGNSFIPSEEPIGLSVEQMRWIQRNPIAR 298

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
             I    +       +          L +    + L      +      +    L  +E+
Sbjct: 299 LVINDDMAPGAYFDSNGIFSGGVADLLEVITLSTGLHFEVVLRSG-GYPQMIETLHKDEA 357

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
            L                +    +         +     N          G     +   
Sbjct: 358 DLALMTASPEREAYLRFSRPLNASPFVLLSGIDQQGKLGNLADKRLAIPSGHVAMQQLRK 417

Query: 328 KCPIPFFVY-----SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
           + P    +         N+ Y   +   +    +            L+    L    A  
Sbjct: 418 RYPEATLIEAGTTLDTMNMLYQGKADAAMVALPAARYYIERLFRDKLVINRVLDVGPATL 477

Query: 383 PVMLYRSDRT-------------CIAASARLHTIQ---------WNRENSLAMTFIPFEK 420
              + RSD                   +A  +  +         W     + +  +    
Sbjct: 478 NFAMRRSDVELQAIIDKVMQSISPDEINAISNRWRSPPGMSGQTWIDYRRVILEILVAAG 537

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
                  +    +  +       +R +  ++  + ++ +     + + + +G +LS NR+
Sbjct: 538 LLLVLSLVWVIYLRRQIKARLKAERMLNDQLQFVETLTDCMPPPLYVRDLKGRMLSCNRS 597

Query: 481 VSKLFGYPVEDILRKPFTVFLEQN---TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
             K  G   E +L K      ++N    P    +YL  +      +++  + L    + +
Sbjct: 598 YLKSVGLSAEQVLNKTVRQLPKENFESQPDFHRNYLQAMRDGQTIESVHAVQL----QGR 653

Query: 538 LLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
            + +   ++    S            DI+E +Q   +L  AK +A+  S  K+ FLA +S
Sbjct: 654 EVWINHWVQPFEDSQGVTKGVICGWLDITEHRQLIEQLQEAKNLADDASRAKTSFLATMS 713

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HEIRTP+ A+IG  E+   +      +            S N +L+++ D+LDI++IESG
Sbjct: 714 HEIRTPMNAVIGILELALKRADSQPID---RASIEIAHTSANSLLELIGDILDIARIESG 770

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNIL 712
           +++L  +  +L E V     + +  A +KR+ +     ++I   +L D    KQI  N++
Sbjct: 771 RLSLSPKRANLRELVESVARVFEGLARQKRLNLILDIDSSINCDVLVDALRFKQILSNLV 830

Query: 713 SNAIHFTPSGG-QIIISTTHTSNE--EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
           SNAI FT  G  +I IS    +     V L V DTGVG++  + ++  +PF Q   + Q 
Sbjct: 831 SNAIKFTEEGSVKISISGLAVNASLLNVNLSVEDTGVGISPSDQQRLFRPFVQAQRNVQH 890

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
             EGTGLGL + +++ +   G+  + ST  +GT +E+
Sbjct: 891 -TEGTGLGLVICRSLCEMMGGRVGLTSTLGRGTRVEL 926


>gi|260892097|ref|YP_003238194.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Ammonifex degensii KC4]
 gi|260864238|gb|ACX51344.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Ammonifex degensii KC4]
          Length = 621

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 73/359 (20%), Positives = 155/359 (43%), Gaps = 24/359 (6%)

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
             IL+    G+  ++ EG ++  N A ++  G   ++++ +P            +     
Sbjct: 273 ELILDNVEAGVIALDTEGKVVLVNPAAARTLGVNAKEMVGRPVAEVFPPGPLREVLERAW 332

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA 574
           +        +L+    G  + + ++   ++           LT  D++E ++ +      
Sbjct: 333 QKGETVRELSLKHPV-GEGERDLIVGTNLLAGPQGSPVGVLLTFRDVTERRRLEE----- 386

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
           +   ++  +    F+A V+HEIR PLT I G+ + +  +   P  +         + +  
Sbjct: 387 RVQRQERLAALGKFVAGVAHEIRNPLTTISGYIQ-MWQRYGKPTPHS-----LPLVAQEV 440

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
             +  IV+ LL  ++       +  +P  L++ V + +  +   A + ++ +  S +  +
Sbjct: 441 RRLNAIVDKLLFFARP----AEMKLQPYDLNQLVVQVLQFIGH-AQDNKVKVEVSLSPEL 495

Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-EVILRVRDTGVGMTNYEL 753
           P +L D   ++Q+ +NI+ N+    P+GG + +ST  TS+    ++ V DTG G+    L
Sbjct: 496 PTVLLDPEQMRQVLMNIIYNSYQAMPNGGLLSVSTELTSDGKYAVVTVGDTGCGIPPENL 555

Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
            +   PF         +  G+GLGL LA  +V A+ G   + S    GT + +  P+ +
Sbjct: 556 PRIFDPFFTT------KARGSGLGLALAHEIVTAHGGHIEVESKVGVGTTMRVYLPVGE 608



 Score = 57.7 bits (138), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 13/116 (11%), Positives = 34/116 (29%), Gaps = 6/116 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D  G +  ++    +T+G  A +M+G  + +V     +     +    ++  T    + 
Sbjct: 286 LDTEGKVVLVNPAAARTLGVNAKEMVGRPVAEVFPPGPLR--EVLERAWQKGETVRELSL 343

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
             P+      + +    L          G                    +R ++  
Sbjct: 344 KHPVGEGERDLIVGTNLLA--GPQGSPVGV--LLTFRDVTERRRLEERVQRQERLA 395


>gi|239905424|ref|YP_002952163.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239795288|dbj|BAH74277.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 904

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 120/728 (16%), Positives = 244/728 (33%), Gaps = 41/728 (5%)

Query: 113 MIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPI--DLAALPIYS 170
           +I   + +V+  L +  +     LL           L   +       +   LA  P   
Sbjct: 44  LIQSHMVEVARNLSLAVDREFAILLAAAEGLATSPALQTGDFPVFRRQVKTLLAGYPASD 103

Query: 171 R-NREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS 229
               E SG + F            RA+ + + + F                   + S   
Sbjct: 104 IIVAEASGQQVFNSYLPEGAPLPKRAVRETVRRVFETGRPGISNLFRGAVTGRYLVSLDM 163

Query: 230 PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYF 289
           P           ++T   A  D +L  E+ P   +                 +    +  
Sbjct: 164 PVWQGAAVGYDLAMTVPVARFDQLLAAERLPAGWTAAVIDAAAVVAARAGQAETWAGRPA 223

Query: 290 GTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYA-NPSF 348
           G L   +             ++    +       +  +       V    ++  A    +
Sbjct: 224 GEL--LAGLETSRDDVAAFETIRLDGEPALAAYDQ-AEGSGWGVAVAVPRSVLLAEVQGW 280

Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
           L  T    +      GG    L   +    +    V    +    +    +         
Sbjct: 281 LWWTGGGVLTL--SLGGFLLALALARRIAGSIDTLVPAAEALGQGLPLPQQRF------G 332

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468
            +                          +   +  + ++         + + + D     
Sbjct: 333 LAETAAVGEALSRAADLLAARAAERRQAEDARQQVEARLAEREHIFRIVADNSHDWEFWD 392

Query: 469 NREGIILSTNRAVSKLFGYPVEDILR---KPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
             +G+    + A +++ G+P E  L          +     +  + +L    +L+     
Sbjct: 393 GPDGLCRWVSPACARVSGHPAEAFLGPGSLTVRDLIHPEDRAAWDAHLDSPEALEAVH-E 451

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKE 581
           E        + ++  +  +  ++               DI+E    + +L  AK++A+  
Sbjct: 452 ELHFRILRADGRVAHIAHVCGRILGPGGENLGRRGANRDITEQHHHERELRRAKEMADAG 511

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
           S  KS+FLA +SHE+RTP+  ++G  ++++             EY     R+   +  ++
Sbjct: 512 SRAKSEFLANMSHEVRTPINGVVGMLQLLETTAL----TEEQQEYVAMAGRAAGRLSRLL 567

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILAD 700
            D+LD+SK+ESG + L   P  L+E     + +    A  K + +    A  +P R++ D
Sbjct: 568 GDILDLSKVESGALVLQQTPFELEELRQAILDVFGPMARNKNLALSVDLAQALPRRVMGD 627

Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---------EVILRVRDTGVGMTNY 751
              ++QI LN++ NA+ +T SG  + ++      +         EV+  V DTG G+  +
Sbjct: 628 DVRLRQILLNLVGNAVKYTDSGF-VHVAVFPGDPDSPPREGAPFEVVFVVADTGRGIPGH 686

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
           +L+    PF Q   +   +  G GLGL + K +V+   G+ ++ S   +GT +  + PL 
Sbjct: 687 KLDSVFSPFVQTDPAAGPQ-GGVGLGLAIVKRLVELMGGRIHLCSVEGQGTSMRAVVPL- 744

Query: 812 DTSHPHDC 819
            T  P + 
Sbjct: 745 -TPLPAEA 751



 Score = 43.5 bits (101), Expect = 0.15,   Method: Composition-based stats.
 Identities = 24/255 (9%), Positives = 58/255 (22%), Gaps = 26/255 (10%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIG---MRLCDVSDILHI---DPNNHIGDLLKRQNTW 143
              G  + +S    +  G+ A   +G   + + D+         D +    + L+  +  
Sbjct: 393 GPDGLCRWVSPACARVSGHPAEAFLGPGSLTVRDLIHPEDRAAWDAHLDSPEALEAVHEE 452

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                    +G   ++        I     E  G RG          +      +R  + 
Sbjct: 453 LHFRI-LRADGRVAHIAHV--CGRILGPGGENLGRRGAN--RDITEQHHHERELRRAKEM 507

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
                  K    +    +          P   +   +  L      ++            
Sbjct: 508 ADAGSRAKSEFLANMSHEVR-------TPINGVVGMLQLLETTALTEEQQEYVAMAGRAA 560

Query: 264 SEE-SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
                 L +  D   +       +Q    L+   +   +              ++   L+
Sbjct: 561 GRLSRLLGDILDLSKVESGALVLQQTPFELEELRQAILDVFGP-------MARNKNLALS 613

Query: 323 PETVDKCPIPFFVYS 337
            +     P       
Sbjct: 614 VDLAQALPRRVMGDD 628


>gi|227819916|ref|YP_002823887.1| two component sensor-kinase [Sinorhizobium fredii NGR234]
 gi|36958717|gb|AAQ87185.1| Sensory Transduction Protein Kinase [Sinorhizobium fredii NGR234]
 gi|227338915|gb|ACP23134.1| two component sensor-kinase [Sinorhizobium fredii NGR234]
          Length = 1333

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 103/770 (13%), Positives = 233/770 (30%), Gaps = 66/770 (8%)

Query: 91   AHGYLKEISEELPKTIGNYAFKM-------IGMRLCDVSDILHIDP-NNHIGDLLKRQNT 142
              G     ++ L   +G     +       +   +             + +   L    +
Sbjct: 586  PGGEPNFFNKRLSDFLGLDVADVDKPGVTRLAAAIAAAVHPDDATEFGDELSRCLVTGES 645

Query: 143  WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
            +  K  L   +G  +Y  ++  A P+         F+ + +      +   +   +  ++
Sbjct: 646  FSRKYRLRRADG--VYRWMEGRAEPLRDHGGAI--FQWYAVAIDIDDEVRAQEALRDRER 701

Query: 203  KFSHLHEIKKGHSSVEKEKY----------DIFSQQSPPPHLRMKNKVSSLTEYYAHK-D 251
            + S L ++   H      +           D F            ++++++ +   H  D
Sbjct: 702  ELSQLVDMVPVHIRRLTPEGEPIFFNKRLIDFFGLDVGDMDKPGTSRLTAVIQTLIHPND 761

Query: 252  DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP-- 309
                 E              +      +            L++ S    ++         
Sbjct: 762  ATGLLETVRRSLVTGDPFSMKYRMRRADGVYRWVDGRAEPLRDQSGAIAQWYVISVDVDD 821

Query: 310  --SLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGG- 365
                     + E    + VD  P   +  S  G   + N   +       + D+E  G  
Sbjct: 822  EMRAQEALRDRERELSQLVDMVPSLLWRLSPEGEPTFLNRRVINFLGL-DLADLEKPGVS 880

Query: 366  -LSTLLDAPKLSDNNAIKPVMLYRS--DRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
             L   ++A    D+ A     L  S       +   RL   +        +        +
Sbjct: 881  RLEAFMEAAVHPDDAADLWGALNHSFVTGERFSKQCRL---RRADGVYRWVQASADPLRD 937

Query: 423  QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
            +    +   G+  +  D    +  +      L  I+E     I     +G  +  N  + 
Sbjct: 938  ESGRIVQWYGLSHDIDDQLRVEEALRERERSLWQIVETLPAMIDCAAPDGEPVYRNPQLR 997

Query: 483  KLFGYPVEDILRK-------PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
               GY +E++               +  +    +       L+        +       +
Sbjct: 998  DFLGYKLEELDGTGKSRLEGTLDAGVHPDEVDGVKENYAHSLTTGEP--YARRHRLRRFD 1055

Query: 536  EKLLSLRIIIKKLPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESSH--KSDFL 589
             +   +      +  +        +   DI    + + KL  A++   + S     S+  
Sbjct: 1056 GEYRWVETRAAPMRNTEGTIVQWNVICLDIDGEVRAEEKLRLAQESLARASQAASLSELS 1115

Query: 590  ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN-PRYIEYANYIDRSGNLVLDIVNDLLDIS 648
            A ++HE+  PL A++  S   +        N  R       I R  N   D+V+ +  + 
Sbjct: 1116 ASIAHEVNQPLAAVVANSHACQRWLTAEPPNLQRAQRTVERIVRDANSAADVVSRIRALF 1175

Query: 649  KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIA 708
            K   G         +L   +SE  +L+   A  +R+ I      ++P I  D   ++Q+ 
Sbjct: 1176 KQSIG----TRINAALASVISEVRNLLADEAARRRVRIDLKIDGDLPPIAIDHIQIQQVL 1231

Query: 709  LNILSNAIHFTP--SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
            +N++ N +      +G +++        + V   + D G G+     ++  +PF      
Sbjct: 1232 INLIRNGMEAMGSLAGDRVLGMRASYIGDVVQTEISDLGPGI--EFPDRVFEPFFTTKKD 1289

Query: 767  QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
                  G G+GL + +++V+ + G+ +       G       P+   + P
Sbjct: 1290 ------GMGMGLAICRSIVELHGGRLWAEKNEPHGAKFIFTLPVEAKAAP 1333



 Score =  150 bits (379), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 54/541 (9%), Positives = 136/541 (25%), Gaps = 39/541 (7%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMI---GMRLCDVSDILH-IDPNNHIGDLLKRQ 140
             W     G    +++ +    G     +I   G R   V      I  +       +  
Sbjct: 318 LIWCTTPEGIPCYLNKRVTDVTGVTLEDLIAPDGSRSLSVVHPDDRIAMDEAFARSFETG 377

Query: 141 NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
             +  +       G   +  ++  A P+   +      + +G+          +   +  
Sbjct: 378 EPFLWRYRQRRANGP--HRWVESRAEPLRDESGAIV--QWYGVSVDIEDMMKAQEALRDR 433

Query: 201 DKKFSHLHEIKKGHSSVEKEKYD-----------IFSQQSPPPHLRMKNKVSSLTEYYAH 249
           +++ S L ++            +           + S  +      M    +++      
Sbjct: 434 ERELSQLVDMVPIPIWRLASDGEPTFFNKRLIDFLGSDVADYDTATMTPLAAAIAAVVHP 493

Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR--- 306
            D                    +      +      +     +++ S    ++       
Sbjct: 494 DDAARMGNALNHSLVTGERFFMRYRLRRADGVYRWVEGRAEPMRDESGRIVQWYGLSHDI 553

Query: 307 -NHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVD-DIEIA 363
            +         + E      VD  P+    +   G   + N            D D    
Sbjct: 554 DDQLRAEEALRKSERQLALLVDVVPVAIACLTPGGEPNFFNKRLSDFLGLDVADVDKPGV 613

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
             L+  + A    D+       L R   T  +  +R + ++        M        + 
Sbjct: 614 TRLAAAIAAAVHPDDATEFGDELSRCLVTGESF-SRKYRLRRADGVYRWMEGRAEPLRDH 672

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
                    +  +  D    +  +     +L  +++     I  +  EG  +  N+ +  
Sbjct: 673 GGAIFQWYAVAIDIDDEVRAQEALRDRERELSQLVDMVPVHIRRLTPEGEPIFFNKRLID 732

Query: 484 LFGYPVEDI-------LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
            FG  V D+       L       +  N  + +   +   L                 + 
Sbjct: 733 FFGLDVGDMDKPGTSRLTAVIQTLIHPNDATGLLETVRRSLVTGDP--FSMKYRMRRADG 790

Query: 537 KLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
               +    + L   S     + +   D+ +  + +  L   ++   +        L R+
Sbjct: 791 VYRWVDGRAEPLRDQSGAIAQWYVISVDVDDEMRAQEALRDRERELSQLVDMVPSLLWRL 850

Query: 593 S 593
           S
Sbjct: 851 S 851



 Score =  120 bits (302), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 48/422 (11%), Positives = 114/422 (27%), Gaps = 27/422 (6%)

Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKY------DIFSQQSPPPHLRM 236
           +  ++R         +R +++   L +           +          +  +      +
Sbjct: 287 VAAISRQHQLALLTVRRSERQLQQLIDAVPALIWCTTPEGIPCYLNKRVTDVTGVTLEDL 346

Query: 237 KNKVSSLTEYYAHKDDVLKTEKY-PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN 295
                S +    H DD +  ++              +      N      +     L++ 
Sbjct: 347 IAPDGSRSLSVVHPDDRIAMDEAFARSFETGEPFLWRYRQRRANGPHRWVESRAEPLRDE 406

Query: 296 SKESFEYLSHRNHPS----LSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLL 350
           S    ++                  + E    + VD  PIP + + S G   + N   + 
Sbjct: 407 SGAIVQWYGVSVDIEDMMKAQEALRDRERELSQLVDMVPIPIWRLASDGEPTFFNKRLID 466

Query: 351 LTKYKSVD-DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
                  D D      L+  + A    D+ A     L  S  T      R + ++     
Sbjct: 467 FLGSDVADYDTATMTPLAAAIAAVVHPDDAARMGNALNHSLVTGERFFMR-YRLRRADGV 525

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469
              +        ++    +   G+  +  D    +  +     QL  +++     IA + 
Sbjct: 526 YRWVEGRAEPMRDESGRIVQWYGLSHDIDDQLRAEEALRKSERQLALLVDVVPVAIACLT 585

Query: 470 REGIILSTNRAVSKLFGYPVEDI-------LRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522
             G     N+ +S   G  V D+       L       +  +  +     L+  L     
Sbjct: 586 PGGEPNFFNKRLSDFLGLDVADVDKPGVTRLAAAIAAAVHPDDATEFGDELSRCLVTG-- 643

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIA 578
           ++  +       +     +    + L         +     DI +  + +  L   ++  
Sbjct: 644 ESFSRKYRLRRADGVYRWMEGRAEPLRDHGGAIFQWYAVAIDIDDEVRAQEALRDREREL 703

Query: 579 EK 580
            +
Sbjct: 704 SQ 705



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/349 (7%), Positives = 83/349 (23%), Gaps = 34/349 (9%)

Query: 85   FTWNIDAHGYLKEISEELPKTIGNYAFKM------IGMRLCDVSDILHIDPN--NHIGDL 136
              W +   G    ++  +   +G     +            + +       +    +   
Sbjct: 846  LLWRLSPEGEPTFLNRRVINFLGLDLADLEKPGVSRLEAFMEAAVHPDDAADLWGALNHS 905

Query: 137  LKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRAL 196
                  +  +  L   +G  +Y  +  +A P+   +      + +G+ H           
Sbjct: 906  FVTGERFSKQCRLRRADG--VYRWVQASADPLRDESGRIV--QWYGLSHDIDDQLRVEEA 961

Query: 197  GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS----------PPPHLRMKNKVSSLTEY 246
             +  ++    + E             +   +                   K+++    + 
Sbjct: 962  LRERERSLWQIVETLPAMIDCAAPDGEPVYRNPQLRDFLGYKLEELDGTGKSRLEGTLDA 1021

Query: 247  YAHKDDVLKTEKYPLLT-SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
              H D+V   ++    + +       +      +      +     ++N      ++   
Sbjct: 1022 GVHPDEVDGVKENYAHSLTTGEPYARRHRLRRFDGEYRWVETRAAPMRNTEGTIVQWNVI 1081

Query: 306  RNHPSLSAYFDEGENLTPETVDKCPIPFF-----------VYSHGNLFYANPSFLLLTKY 354
                      +E   L  E++ +                 V        AN         
Sbjct: 1082 CLDIDGEVRAEEKLRLAQESLARASQAASLSELSASIAHEVNQPLAAVVANSHACQRWLT 1141

Query: 355  KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403
                +++ A      +     S  + +  +            +A L ++
Sbjct: 1142 AEPPNLQRAQRTVERIVRDANSAADVVSRIRALFKQSIGTRINAALASV 1190



 Score = 60.0 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/161 (11%), Positives = 44/161 (27%), Gaps = 9/161 (5%)

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
            +    +       ++    +     QL  +++A    I     EGI    N+ V+ + G
Sbjct: 281 ALSALIVAAISRQHQLALLTVRRSERQLQQLIDAVPALIWCTTPEGIPCYLNKRVTDVTG 340

Query: 487 YPVEDIL---RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
             +ED++          +  +    M+                              +  
Sbjct: 341 VTLEDLIAPDGSRSLSVVHPDDRIAMDEAFARSFETGEPFLWR--YRQRRANGPHRWVES 398

Query: 544 IIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEK 580
             + L   S     +     DI +  + +  L   ++   +
Sbjct: 399 RAEPLRDESGAIVQWYGVSVDIEDMMKAQEALRDRERELSQ 439


>gi|320158971|ref|YP_004191349.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio vulnificus
           MO6-24/O]
 gi|319934283|gb|ADV89146.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio vulnificus
           MO6-24/O]
          Length = 857

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 85/373 (22%), Positives = 168/373 (45%), Gaps = 19/373 (5%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            ++E +      +       + + +  G+++  N A  K  G   E    + F+  L Q 
Sbjct: 350 EQLESQRRSFQDLFNFALSPMMVWSESGLLIQMNPAAMKELGI--EHASPQDFSNPLFQL 407

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISE 563
               ++ +L           +          EK+    +    +    S   +   DI+ 
Sbjct: 408 FKLKLSPHLKMAAQGATLTGINVPI-----GEKIFRWNLSPIVVENGISGIIVQGQDITT 462

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
               + + + A++ AE+ +  ++DFLA++SHEIRTPL  I+G ++++K      + +   
Sbjct: 463 LIDAEKQSNLARREAEQSAKTRADFLAKMSHEIRTPLNGILGIAQLLKR----SVNDAEN 518

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
           ++  + +  SG  +L ++ND+LD SKIE GK N+     +  + ++   ++ +    EK 
Sbjct: 519 LKQVDVLCNSGEHLLAVLNDILDFSKIEQGKFNIKKRDFNFYDTLNTLENIYRPICREKG 578

Query: 684 ILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-----V 737
           +         +  ++  D   + QI  N++SNA+ FTP+G +I +S             +
Sbjct: 579 VSFEIHNQIPLDCQLHTDQVRLNQIMFNLISNAVKFTPAG-RIEVSFKLEQFARSEHSIL 637

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
            ++V DTG+G+   +LE   +PF Q  +       G+GLGL + K +V+   G+  + S 
Sbjct: 638 SIQVSDTGIGIDESKLESIFEPFVQADSLSTREYGGSGLGLTIVKNLVEMLEGEISVQSE 697

Query: 798 PAKGTLIEIIFPL 810
             KG+   +  P+
Sbjct: 698 LCKGSTFYLSIPV 710


>gi|220927420|ref|YP_002502721.1| cyclic nucleotide-binding protein [Methylobacterium nodulans ORS
           2060]
 gi|219952894|gb|ACL63282.1| cyclic nucleotide-binding protein [Methylobacterium nodulans ORS
           2060]
          Length = 655

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 77/497 (15%), Positives = 164/497 (32%), Gaps = 34/497 (6%)

Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
           F +   G +   NP       YK  + +      S          +   + +     D  
Sbjct: 30  FMLDPTGIIISWNPGAERFKGYKEAEILGQ--HFSRFYTEEDRQTDLPRRALETAARDGR 87

Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
                     ++ +    +    I     +     +    +  +    +  ++ +     
Sbjct: 88  ---FEQEGWRVRKDGSR-MWAHVIIDPIRDPSGTLIGFAKVTRDITKRQAAQQALRETEE 143

Query: 453 QLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
           +   +++   D  I +++ EGI+ + N    ++ GY   +I+ + F+ F  +   +    
Sbjct: 144 RFRLLVQGVRDYAIFMLSPEGIVTNWNSGAQRIKGYSEAEIIGQHFSRFYTEEDRAAGVP 203

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQE 567
               + +       E       ++       ++I  +   +   +       DI+E +  
Sbjct: 204 A-RALETAARVGKFEAEGWRVRRDGTRFWASVLIDAIRDETGRLVGFAKVTRDITERRNA 262

Query: 568 KNKLSHAKKIAEKES--SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           +  L   +    +           A ++H+    LT ++G  ++++              
Sbjct: 263 QQALEKTQAALFQAQKMEALGGLSAGIAHDFNNLLTVVLGNLDLLRRAPEERRAR----- 317

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
             +   ++      +   LL   + +     L  E V +   +     +++       I 
Sbjct: 318 LIDNAMQAVEQGRKLTQQLLAFGRSQ----TLRPEVVDVTRLILGMNDMLKQSLRG-DIG 372

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT--HTSNEEVI----L 739
           I    A ++  +  D   ++   +N+  NA    P GGQ  I T    T + +V     +
Sbjct: 373 IVLDLAEDLWPVEVDPAQLQIALINLAVNARDAMPKGGQFRIKTENVTTHDGKVAQSVAI 432

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V DTG GM+   L +A +PF     S +  G+GTGLGLP        + G   + S   
Sbjct: 433 SVSDTGHGMSPDVLARAFEPFF----STKEVGKGTGLGLPQVYGFAQQSNGSVRVTSEVG 488

Query: 800 KGTLIEIIFPLYDTSHP 816
            GT   I  P      P
Sbjct: 489 HGTTFTISLPRTSAQVP 505



 Score = 86.6 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 51/139 (36%), Gaps = 6/139 (4%)

Query: 450 EVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
           E  +   +++A +D  I +++  GII+S N    +  GY   +IL + F+ F  +     
Sbjct: 13  EEQRFRLLIQAVTDYAIFMLDPTGIIISWNPGAERFKGYKEAEILGQHFSRFYTEEDRQT 72

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEW 564
                  + +       E+      K+   +   +II  +   S   +       DI++ 
Sbjct: 73  DLPR-RALETAARDGRFEQEGWRVRKDGSRMWAHVIIDPIRDPSGTLIGFAKVTRDITKR 131

Query: 565 KQEKNKLSHAKKIAEKESS 583
           +  +  L   ++       
Sbjct: 132 QAAQQALRETEERFRLLVQ 150



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/386 (8%), Positives = 98/386 (25%), Gaps = 16/386 (4%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + +D  G +   +    +  G    +++G              +     L         
Sbjct: 29  IFMLDPTGIIISWNPGAERFKGYKEAEILGQHFSRFYTEEDRQTDLPRRALETAARDGRF 88

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +   W +      +   +   PI   +    GF    +          +   +  +++F 
Sbjct: 89  EQEGWRVRKDGSRMWAHVIIDPIRDPSGTLIGFAK--VTRDITKRQAAQQALRETEERFR 146

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS-----LTEYYAHKDDVLKTEKYP 260
            L +  + ++        I +  +           +       + +Y  +D         
Sbjct: 147 LLVQGVRDYAIFMLSPEGIVTNWNSGAQRIKGYSEAEIIGQHFSRFYTEEDRAAGVPARA 206

Query: 261 LLTSEESSLPEQEDFH-TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
           L T+      E E +    +  ++        +++ +     +       +      +  
Sbjct: 207 LETAARVGKFEAEGWRVRRDGTRFWASVLIDAIRDETGRLVGFAKVTRDITERRNAQQAL 266

Query: 320 NLTPETVDKCP--IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
             T   + +          S G     N    ++     +         + L+D    + 
Sbjct: 267 EKTQAALFQAQKMEALGGLSAGIAHDFNNLLTVVLGNLDLLRRAPEERRARLIDNAMQAV 326

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
               K      +          +  +       L +      K +   +      +  + 
Sbjct: 327 EQGRKLTQQLLAFGRSQTLRPEVVDVTR-----LILGMNDMLKQSLRGDIGIVLDLAEDL 381

Query: 438 VDTRINKRKMEIEVMQLC-SILEATS 462
               ++  +++I ++ L  +  +A  
Sbjct: 382 WPVEVDPAQLQIALINLAVNARDAMP 407


>gi|37676880|ref|NP_937276.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
 gi|50400926|sp|Q7MD16|LUXQ_VIBVY RecName: Full=Autoinducer 2 sensor kinase/phosphatase luxQ
 gi|37201424|dbj|BAC97246.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
          Length = 857

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 85/373 (22%), Positives = 168/373 (45%), Gaps = 19/373 (5%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            ++E +      +       + + +  G+++  N A  K  G   E    + F+  L Q 
Sbjct: 350 EQLESQRRSFQDLFNFALSPMMVWSESGLLIQMNPAAMKELGI--EHASPQDFSNPLFQL 407

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISE 563
               ++ +L           +          EK+    +    +    S   +   DI+ 
Sbjct: 408 FKLKLSPHLKMAAQGATLTGINVPI-----GEKIFRWNLSPIVVENGISGIIVQGQDITT 462

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
               + + + A++ AE+ +  ++DFLA++SHEIRTPL  I+G ++++K      + +   
Sbjct: 463 LIDAEKQSNLARREAEQSAKTRADFLAKMSHEIRTPLNGILGIAQLLKR----SVNDAEN 518

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
           ++  + +  SG  +L ++ND+LD SKIE GK N+     +  + ++   ++ +    EK 
Sbjct: 519 LKQVDVLCNSGEHLLAVLNDILDFSKIEQGKFNIKKRDFNFYDTLNTLENIYRPICREKG 578

Query: 684 ILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-----V 737
           +         +  ++  D   + QI  N++SNA+ FTP+G +I +S             +
Sbjct: 579 VSFEIHNQIPLDCQLHTDQVRLNQIMFNLISNAVKFTPAG-RIEVSFKLEQFARSEHSIL 637

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
            ++V DTG+G+   +LE   +PF Q  +       G+GLGL + K +V+   G+  + S 
Sbjct: 638 SIQVSDTGIGIDESKLESIFEPFVQADSLSTREYGGSGLGLTIVKNLVEMLEGEISVQSE 697

Query: 798 PAKGTLIEIIFPL 810
             KG+   +  P+
Sbjct: 698 LCKGSTFYLSIPV 710


>gi|291543747|emb|CBL16856.1| Signal transduction histidine kinase [Ruminococcus sp. 18P13]
          Length = 554

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 78/394 (19%), Positives = 162/394 (41%), Gaps = 29/394 (7%)

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
            P   A+          I  ++ +     R ++ +  +   +     +G+ + +    +L
Sbjct: 185 HPDTDADYEEIAPLLYKIHTQNQEIARQMRTLKKQQEEFRQLTAHMREGLLVADSHCEVL 244

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
           S N A  ++FG P     R  +     +     +   L    +           L S  +
Sbjct: 245 SWNAAALEIFGVPESTDTRNIYEFNRSEPFRMAVEQALAGQPA---------EQLLSLGQ 295

Query: 536 EKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
                L   +++    +   + + D++E +  +                + +F + VSHE
Sbjct: 296 HSYRMLASPVQEQDAVTGIMVLLLDVTEQEHRE--------------QLRREFTSNVSHE 341

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           ++TPLTAI   + ++      P       ++A  I R    ++ +VND L +S+++   +
Sbjct: 342 MKTPLTAIHAIAGMLVQDVIEPKD---VKKFAGDIYRESARMIALVNDTLRLSRMDENGI 398

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715
               EPV L +   E I+ +++ A +K++    S A     +      ++++  N+  NA
Sbjct: 399 AEPKEPVDLYDLAEEVIARLRVTAEKKQVAF--SLAGTHVTVNGVYSMLEEMIYNLCDNA 456

Query: 716 IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           + +    G + +S   T+ +E IL V+DTG+G+   +  +  + F ++  S      GTG
Sbjct: 457 VKYNKEQGTVTVSV-LTAGKEGILMVQDTGIGIPQEDQSRIFERFYRVDKSHSRAIGGTG 515

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           LGL + K     +  +  + S P +G+   +IFP
Sbjct: 516 LGLSIVKHGAAYHNAQVQVSSKPGEGSTFTVIFP 549


>gi|254560573|ref|YP_003067668.1| sensor hybrid histidine kinase with multiple PAS and response
           regulator receiver domains [Methylobacterium extorquens
           DM4]
 gi|254267851|emb|CAX23717.1| putative sensor hybrid histidine kinase with multiple PAS and
           response regulator receiver domains [Methylobacterium
           extorquens DM4]
          Length = 1103

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 108/781 (13%), Positives = 205/781 (26%), Gaps = 85/781 (10%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI-------GDLLKRQNT 142
           DA G +   +    +  G     +      D       +    +          L    T
Sbjct: 202 DAEGRIVHDNAANREIWGMPPQTVNWESYGD-WVGYWPETGERLRAEEWGMARALLHGET 260

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
             G+                  A PI  R     G  G           +     +  + 
Sbjct: 261 VRGELVEIERFDGGGRRLFLNNAAPIRDRAGAIVG--GVVAELDVTERIEVERRLRESEA 318

Query: 203 KFSHLHE----IKKGHSSVEKEKYDIFSQQSP------------PPHLRMKNKVSSLTEY 246
                 E         + V    +D+ S +              P   R    ++ + E 
Sbjct: 319 LARVNAERVQLALSAGAIVGTWFWDLPSDRFTVDEGFARAFGLDPALGREGLSLAQVVET 378

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
               D     +      +   +   Q      +   Y  +               +    
Sbjct: 379 VHSDDKAGLAKAIGEAIARGGAYAHQYRVRRADGRYYWIEANGRVDHAPDGTPLSFPGVL 438

Query: 307 NHPSLSAYFDEGENLTPETV-----------DKCPIPFFVYSHGNLFYA-NPSFLLLTKY 354
                        +     +           D  P   ++       Y  N  +   T  
Sbjct: 439 IDVEERRAVAAERDRATALLREKAVEFETLADNIPALCWMARADGHIYWYNRRWYDYTG- 497

Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
              + ++  G  +        +     +      +       +     ++          
Sbjct: 498 TDAESMQGWGWKA---VHDPAALPGVSERWQHSIATGERFDMT---FPLRGRDGTFRPFL 551

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC-----------SILEATSD 463
                  ++    +   G   +  D R  +  +      L             I +A+SD
Sbjct: 552 TRIVPIRDETGTVVRWFGTNTDITDLRAVQDALHRLNETLEEQVAARTAERDQIWQASSD 611

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
            +A+ + EG  +S N A S   G+   ++   PF  F+      +       +   +++ 
Sbjct: 612 LLAVADFEGRFVSLNPAWSATLGWSEAELKAVPFLDFVHPEDRELTLAAAASLARGEMQL 671

Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK--QEKNKLSHAKKIAEKE 581
             E        + +  S       +P       ++ D++  K        +       ++
Sbjct: 672 GFENRYRTRDGDYRWFSWNT----VPRQGLIYASVRDVTAIKGQARALAEAEEALRQSQK 727

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
                     ++H+    L  I G  E +   R           Y      +      + 
Sbjct: 728 MEAVGQLTGGLAHDFNNLLAGISGSLE-LMQTRISQGRLKDVDRYMGAAQGAAKRAAALT 786

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701
           + LL  S+    +  L   P  ++  V     L++       I I    A  +   L D 
Sbjct: 787 HRLLAFSR----RQTLDPRPTDVNRLVMGMEDLIR-RTVGPTITIEVVGAAGLWPSLVDP 841

Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTT-------------HTSNEEVILRVRDTGVGM 748
             ++   LN+  NA    P GG+I I T                  + + L V DTG GM
Sbjct: 842 PQLENALLNLCINARDAMPEGGRITIETANKWLDAHAAHQHDVPPGQYLSLCVTDTGTGM 901

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           +     KA  PF     +    G+GTGLGL +         G+  I+S   +GT + I  
Sbjct: 902 SPDVRAKAFDPFFTTKPT----GQGTGLGLSMIYGFAKQTGGQVRIYSELGQGTTVCIYL 957

Query: 809 P 809
           P
Sbjct: 958 P 958



 Score = 84.3 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 32/314 (10%), Positives = 79/314 (25%), Gaps = 24/314 (7%)

Query: 294 NNSKESFEYLSHRNHP-SLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLL 351
             +          +HP      + E        V   P      +     F+ N ++  L
Sbjct: 23  GEAARMIAERDWSDHPLGPPQTWPESLRTALSLVLNSPESMILAWGPELHFFFNDTYFPL 82

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411
              +    +        +           I         R        L T +   E   
Sbjct: 83  LGPRLPWAMGER--FDRVWADAWDQAKPIIDDA-FAGRSRRFEDLPWTLATDR--GEAQT 137

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDT-------RINKRKMEIEVMQLCSILEATSDG 464
             +F      +             E           R ++  +      L + L+    G
Sbjct: 138 WWSFSYSRVLDGEGRIAGLFVFTNETTKRIRMEALQRESEAALRRSESFLAATLQGLPVG 197

Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL-----EQNTPSVMNHYLTEILSL 519
           + I + EG I+  N A  +++G P + +  + +  ++                +   L  
Sbjct: 198 VIIADAEGRIVHDNAANREIWGMPPQTVNWESYGDWVGYWPETGERLRAEEWGMARALLH 257

Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHAK 575
                 E + +                 +   +       +   D++E  + + +L  + 
Sbjct: 258 GETVRGELVEIERFDGGGRRLFLNNAAPIRDRAGAIVGGVVAELDVTERIEVERRLRES- 316

Query: 576 KIAEKESSHKSDFL 589
           +   + ++ +    
Sbjct: 317 EALARVNAERVQLA 330



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/265 (12%), Positives = 62/265 (23%), Gaps = 23/265 (8%)

Query: 47  DSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTI 106
           D  E+     +   + +       E  F            W   A G++   +       
Sbjct: 440 DVEERRAVAAERDRATALLREKAVE--FETLADNIPA-LCWMARADGHIYWYNRRWYDYT 496

Query: 107 GNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNL-YVPIDLAA 165
           G  A  M G     V D   +   +          T       +P+ G +  + P     
Sbjct: 497 GTDAESMQGWGWKAVHDPAALPGVSERWQ--HSIATGERFDMTFPLRGRDGTFRPFLTRI 554

Query: 166 LPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH-----------EIKKGH 214
           +PI          R FG           +    RL++                 +     
Sbjct: 555 VPIRDETGTVV--RWFGTNTDITDLRAVQDALHRLNETLEEQVAARTAERDQIWQASSDL 612

Query: 215 SSVEKEKYDIFSQQSPP----PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270
            +V   +    S              + K     ++   +D  L       L   E  L 
Sbjct: 613 LAVADFEGRFVSLNPAWSATLGWSEAELKAVPFLDFVHPEDRELTLAAAASLARGEMQLG 672

Query: 271 EQEDFHTINLNQYTKKQYFGTLQNN 295
            +  + T + +           Q  
Sbjct: 673 FENRYRTRDGDYRWFSWNTVPRQGL 697


>gi|196231107|ref|ZP_03129967.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
 gi|196224937|gb|EDY19447.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
          Length = 1042

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 100/665 (15%), Positives = 229/665 (34%), Gaps = 54/665 (8%)

Query: 181 FGIVHVNRVDNDPRALGKRLD--KKFSHLHEIKKGHSSVEKEKYDIFSQQSPP--PHLRM 236
           F +  +       RA G+R     +   + +        +  ++ I    +       + 
Sbjct: 249 FALQQMEHGAQRRRAEGERNRIAAEMQMILDGVPAMIFYKDRQHRIMRANATLLRTLGKA 308

Query: 237 KNKVSSLTEYYAHKD--DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294
           + +V   ++        ++   ++  +  + E  L   E     +      +     L++
Sbjct: 309 EEEVIGKSDEEIGSPYYEIYARDEDQIAETGEPKLGCIEPL-ATSGGVRWLQTDKVPLRD 367

Query: 295 NSKESFEYLSHRNHPSLSAYFDE----GENLTPETVDKCPIPFFVYS--HGNLFYANPSF 348
            +     ++      +     +E     E     +     +         G     NP F
Sbjct: 368 ANGNITGFIGLAMDITERRLAEENLRAREADFRASFFSSAVGQVQADPVTGRYLRVNPKF 427

Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
             +T Y   + +                D+         R  R  I    R    Q    
Sbjct: 428 CEITGYTEEELLG------MTFHQLTHPDDRTNDSEAHQRMVRGEITEINRQKRYQRKDG 481

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468
            ++ ++       +     +    +  +  +    +   E    +   ++E +  GI II
Sbjct: 482 TAVWVSICASLIRDDVGRPLRTLAVVQDITERHKAEAARETAEAKYRGLVEQSLVGIYII 541

Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528
            ++   +  N   +++ GY  E++       F+ +   +++   +   +  ++   +   
Sbjct: 542 -QDDRYVYANPTFAQIMGYTAEELTAGKVLDFVFEEDRALVAENIRRRMEGEVD-FVRYG 599

Query: 529 TLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
                K+  ++ + +   +  +        ++ D++E K+ + +L  + K+         
Sbjct: 600 LRMVRKDGSVVHIEVHGSRSEYEGRPAILGSLLDLTERKKIETQLLQSHKM-----EAIG 654

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
                ++H+    LTAI G +++          +    E+   + ++G   +D+V  +L 
Sbjct: 655 QLAGGIAHDFNNLLTAITGNTKLALEDL---PADSPVREHLAEVSKAGLRAVDLVRRILT 711

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706
            S+    +     + + L   V EA+ L++       I IR++F  + P + AD   V Q
Sbjct: 712 FSR----QQPQERKLMHLQPIVEEALQLLRASLPT-TIEIRSTFVPDAPVVRADATQVHQ 766

Query: 707 IALNILSNAIHFTPSGGQIIISTTHTS--------------NEEVILRVRDTGVGMTNYE 752
           + +N+ +NA H     G + +                       V L V D+G GM    
Sbjct: 767 VIMNLGANAGHAMSGRGVLELRQAMIDVDTDLARTSPELRVGRYVRLTVSDSGCGMDRAT 826

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
           + +   PF    +    +GEGTGLGL +   ++ A+ G   ++S P KGT   + FP  +
Sbjct: 827 VARVFDPFFTTKS----QGEGTGLGLSVVHGIMKAHDGAITVYSEPGKGTAFHLYFPAAE 882

Query: 813 TSHPH 817
            + P 
Sbjct: 883 GAIPE 887



 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 45/461 (9%), Positives = 125/461 (27%), Gaps = 38/461 (8%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D    +   +  L +T+G    ++IG    ++    +         + +      G    
Sbjct: 289 DRQHRIMRANATLLRTLGKAEEEVIGKSDEEIGSPYYEIYARDEDQIAETGEPKLGCIEP 348

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
               G      +    +P+   N   +GF G  +              +  +  F     
Sbjct: 349 LATSGG--VRWLQTDKVPLRDANGNITGFIGLAM--DITERRLAEENLRAREADFRASFF 404

Query: 210 IKK-GHSSVEKEKYDIFSQQS--PPPHLRMKNKVSSLTEYYAHKDDVL---KTEKYPLLT 263
               G    +                    + ++  +T +     D           ++ 
Sbjct: 405 SSAVGQVQADPVTGRYLRVNPKFCEITGYTEEELLGMTFHQLTHPDDRTNDSEAHQRMVR 464

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS----AYFDEGE 319
            E + +  Q+ +   +            ++++       L+     +      A  +  E
Sbjct: 465 GEITEINRQKRYQRKDGTAVWVSICASLIRDDVGRPLRTLAVVQDITERHKAEAARETAE 524

Query: 320 NLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
                 V++  +  ++       YANP+F  +  Y + +++     L  + +     D  
Sbjct: 525 AKYRGLVEQSLVGIYIIQDDRYVYANPTFAQIMGYTA-EELTAGKVLDFVFEE----DRA 579

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
            +   +  R +         L  ++ +             +    P      G   +  +
Sbjct: 580 LVAENIRRRMEGEVDFVRYGLRMVRKDGSVVHIEVHGSRSEYEGRP---AILGSLLDLTE 636

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
            +  + ++     ++ +I +            GI    N  ++ + G     +   P   
Sbjct: 637 RKKIETQLLQSH-KMEAIGQLAG---------GIAHDFNNLLTAITGNTKLALEDLPADS 686

Query: 500 FLEQNTPS------VMNHYLTEILSLDLRQTLEKITLGSTK 534
            + ++              +  IL+   +Q  E+  +    
Sbjct: 687 PVREHLAEVSKAGLRAVDLVRRILTFSRQQPQERKLMHLQP 727



 Score = 70.4 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/344 (8%), Positives = 82/344 (23%), Gaps = 11/344 (3%)

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
           V+ L    A    V +                 +    I+      ++         K  
Sbjct: 68  VTVLLWLTARALQVAQERIAHRERLYALLSQCNQSIVHISERLPLFERICEIAVTLGKFR 127

Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDD 359
             ++   +  +          +     ++          G L          +   +  D
Sbjct: 128 MAWIGEVDRKTQLVRPMAHAGIDAGLFERVKFSVRDEPEGRLTPGTAIREKRSVVSN--D 185

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
           +     +  L++     D  +     ++               + +  E  + +      
Sbjct: 186 MRHDPRMLPLVEEAMKRDFCSAAAFPIHSEKDVIGCFVLYSDEVGFFDEEEVKLL----- 240

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
                 +              R  + +      ++  IL+     I   +R+  I+  N 
Sbjct: 241 -EEMASDISFALQQMEHGAQRRRAEGERNRIAAEMQMILDGVPAMIFYKDRQHRIMRANA 299

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
            + +  G   E+++ K                   +I      +      L ++   + L
Sbjct: 300 TLLRTLGKAEEEVIGKSDEEIGSPYYEIYARDE-DQIAETGEPKLGCIEPLATSGGVRWL 358

Query: 540 SLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKE 581
               +  +    +   +     DI+E +  +  L   +      
Sbjct: 359 QTDKVPLRDANGNITGFIGLAMDITERRLAEENLRAREADFRAS 402


>gi|254248418|ref|ZP_04941738.1| Signal transduction histidine kinase [Burkholderia cenocepacia
           PC184]
 gi|124874919|gb|EAY64909.1| Signal transduction histidine kinase [Burkholderia cenocepacia
           PC184]
          Length = 685

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 102/560 (18%), Positives = 182/560 (32%), Gaps = 45/560 (8%)

Query: 274 DFHTINLNQYTKK--QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI 331
           D       +   +      TL         ++      + +              +  P 
Sbjct: 3   DRGHAPARRQPVRCKDAMTTLTREVFRQGAWVVLAVGLATALQAWA----IRAVGEHAPF 58

Query: 332 PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR 391
               +  G    A  ++L              G +  L            +      +  
Sbjct: 59  APLPFYAG---VAAAAWLTSFGGGLAATAASVGVIGALWWRDAPLATLLAQAGAFV-AIG 114

Query: 392 TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV 451
                           +    +     +      E      +  + +             
Sbjct: 115 FVECVLVAAVKPLLANDRLREIGDDDSDSYPSHREPSSVASLSGDGL------------- 161

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
             L  +++A+ D I   +    I S N A + +FG        +     +         H
Sbjct: 162 --LRRVVDASPDAIVGTDAARRITSWNPAAASIFGIDTAQASGRDIVTMIAPRWLR--RH 217

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQE 567
            +    +           L                 +  +  +      T+ +  E ++ 
Sbjct: 218 AVPASFADLRAPVGPLDVLCVRSNGGRFRATFAASPIVDAQGHCAGLSLTLREAGERRRN 277

Query: 568 KNKL-------SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           +            A+  A+  +  K + LA VSHE+RTPL  I G+ EV++N      G 
Sbjct: 278 ERHHLRSLRGARDARVQADASNRLKDELLATVSHELRTPLNVIYGWVEVLRN----ADGQ 333

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
               +  + IDRS   +  +V DLLD S + +G++ L   PV L   V +A   +   A 
Sbjct: 334 GFAQQAVDAIDRSARSLSHMVADLLDASSLATGRLRLERVPVDLVRIVRDAARELDATAQ 393

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
              +++ T +A     I AD   ++Q+  N+LSNAI FTP GG+I +S T  + E V L 
Sbjct: 394 ANGLVLSTEYAMPACVIPADGERLRQVLSNLLSNAIKFTPPGGRINVSLT-RAGERVRLS 452

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PA 799
           V DTG G+    L      F +   +      G GLGL + + +   + G+    S    
Sbjct: 453 VSDTGQGIAPEYLPHLFDTFSRPEGAFTSPKRGLGLGLSIVRNIAQLHGGEVVATSAGAG 512

Query: 800 KGTLIEIIFPL-YDTSHPHD 818
           +G  + +  P  +D   P +
Sbjct: 513 RGMTVTVTLPAGWDADDPTE 532



 Score = 62.7 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/488 (8%), Positives = 98/488 (20%), Gaps = 41/488 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            DA   +   +       G    +  G  +  +     +  +         +        
Sbjct: 176 TDAARRITSWNPAAASIFGIDTAQASGRDIVTMIAPRWLRRHAVPASFADLRAPVGPLDV 235

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
              +           AA PI       +G      +              R  +      
Sbjct: 236 -LCVRSNGGRFRATFAASPIVDAQGHCAGLS--LTLREAGERRRNERHHLRSLRGARDAR 292

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
                 + ++ E     S +   P   +   V  L             +           
Sbjct: 293 VQADASNRLKDELLATVSHELRTPLNVIYGWVEVLRNADGQGFAQQAVDAIDRSA----- 347

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
              +   H +           G L+            R+         +   L   T   
Sbjct: 348 ---RSLSHMVADLLDASSLATGRLRLERVPVDLVRIVRDAARELDATAQANGLVLSTEYA 404

Query: 329 CPIPFFVYSHGNLFYA------------------NPSFLLLTKYKSVDDIEIAGGLSTLL 370
            P          L                     N S     +   +   +   G++   
Sbjct: 405 MPACVIPADGERLRQVLSNLLSNAIKFTPPGGRINVSLTRAGERVRLSVSDTGQGIAPEY 464

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
                   +  +           +  S   +  Q +    +A +             +P 
Sbjct: 465 LPHLFDTFSRPEGAFTSPKRGLGLGLSIVRNIAQLHGGEVVATSAGAGRGMTVTVT-LPA 523

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG--IAIINREGIILSTNRAVSKLFGYP 488
                +  +     +     V           DG  + +++ +    ++  A  +  G  
Sbjct: 524 GWDADDPTEQPSRTKGASDTVAL---------DGQRVLVVDDDATSRTSLAAALETMGAQ 574

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
           V         + + +  P  +      +   D    L++I         L  + +     
Sbjct: 575 VSTARSGHDALEVVERQPPSVVLSDLAMPDGDGYWLLDRIRRLPNGGGHLPVVAVTAHAG 634

Query: 549 PFSSCYSL 556
                  +
Sbjct: 635 KADRRRVM 642


>gi|323704003|ref|ZP_08115626.1| integral membrane sensor signal transduction histidine kinase
           [Desulfotomaculum nigrificans DSM 574]
 gi|323531032|gb|EGB20948.1| integral membrane sensor signal transduction histidine kinase
           [Desulfotomaculum nigrificans DSM 574]
          Length = 498

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 70/248 (28%), Positives = 129/248 (52%), Gaps = 3/248 (1%)

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
            +L+    +  +    + DF+A VSHE+RTPLT I G++E + ++        +  EY +
Sbjct: 249 KELNDKINLLRQIDETRRDFVASVSHELRTPLTIIQGYTEALLDEVV--ETPEKKEEYLH 306

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I      +  +VNDLLD+ +IE+G++ L+ + V L +  S  +  ++    EK++ ++ 
Sbjct: 307 SILEETLRLRRLVNDLLDLRQIETGQVKLNKQAVDLADLFSAVLQKMEGLFREKQVDLKL 366

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748
           +          D   + Q+ +N++ NA+  TP GG+I++    + N E+ ++V D+G G+
Sbjct: 367 ALPEKPVVAEVDPDRIGQVLINLVDNALRATPGGGRILVKLMVSDN-EITVKVTDSGPGI 425

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
              E +     F +I  S+   G GTGLGL + K +V+ + G+  + S P +GT      
Sbjct: 426 PKEEQKLIWHKFYKIDKSRSRSGGGTGLGLAIVKQLVEIHGGRITLDSQPGQGTTFSFTL 485

Query: 809 PLYDTSHP 816
           P+   + P
Sbjct: 486 PMQPGAAP 493


>gi|91775022|ref|YP_544778.1| GAF sensor hybrid histidine kinase [Methylobacillus flagellatus KT]
 gi|91709009|gb|ABE48937.1| GAF sensor hybrid histidine kinase [Methylobacillus flagellatus KT]
          Length = 703

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 99/404 (24%), Positives = 153/404 (37%), Gaps = 28/404 (6%)

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII----NREGI--- 473
                          E V+    +  + +  M+   I ++   G+ II    +R+G    
Sbjct: 177 RRDALLLQKVAERTWETVERARAEHALCLTEMRSQQIFDSIDQGMCIIRMVYDRDGKPID 236

Query: 474 --ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
              L  N A +   G              L  +           I    + +  E     
Sbjct: 237 YIFLHANAAFASQTGLANVIGKGMR---ELAPHHEQFWFDTYARIDRTSIPERFEHKAEA 293

Query: 532 STKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
                +   +       P      +   DIS     +  L        K +  K DFLA 
Sbjct: 294 LK---RFYEVYGFRIDDPEEHTVCVLFKDISSRIAAEQAL-------LKANKAKDDFLAV 343

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           VSHE+R PL  I+  +E +  +       P     A  + R+   +  +V+DLLD+S+I 
Sbjct: 344 VSHELRNPLNLILLNAE-LLARIPEAQTQPIIQRTAETLSRTVKNLAIVVDDLLDLSRIN 402

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
           +GK+ L    +  +  V   I+  Q  A    I +  +   N+  I AD   ++Q+  N+
Sbjct: 403 TGKLALQCHSLHFEPLVRRLITSFQDEAQHNGIALSHALQPNLL-IHADAARIEQVIWNL 461

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           LSNA+ FTPSGG I +S +   +   IL V DTG G+    L      F Q  +S     
Sbjct: 462 LSNALKFTPSGGAIHVSLSSRDD-WAILEVSDTGQGIAAEVLPHVFDMFVQEDSSSSRIK 520

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGT--LIEIIFPLYDT 813
            G G+GL L K +V+ + GK    S   KGT     +  PL  T
Sbjct: 521 GGLGIGLALVKQIVELHQGKVEACSR-GKGTGANFRVFLPLSRT 563


>gi|307299140|ref|ZP_07578941.1| multi-sensor signal transduction histidine kinase [Thermotogales
           bacterium mesG1.Ag.4.2]
 gi|306914936|gb|EFN45322.1| multi-sensor signal transduction histidine kinase [Thermotogales
           bacterium mesG1.Ag.4.2]
          Length = 691

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 79/522 (15%), Positives = 181/522 (34%), Gaps = 29/522 (5%)

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKS 356
                ++ +   +  +            V   P+          +   N +   +  +K 
Sbjct: 185 AMTGQIARKRGEAAESELASTSERLAVIVKNSPVAIISLDLDYKVTSWNEAAEEIFGWKC 244

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
            + +            P + +        +       +         +      + +   
Sbjct: 245 SEVLGKPL--------PYILETQKEDYERMNVETLKGLPVRGERFAQRTKDGREIIIKVY 296

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII-----NRE 471
                ++        GI  +  +    +  ++   ++   +    + G+AI        +
Sbjct: 297 NAPIRDENGNLEGIFGILEDVTEQHKAELALKESELRFRKLYMNMNIGVAIYRVINEGDD 356

Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
            + L  N +  ++ G   E+IL +             +   L E+      + +      
Sbjct: 357 VVFLDMNPSGCRITGVNREEILGRSVKAIFPSVVELGLYQRLIEVWKT--SRPMHHPVRR 414

Query: 532 STKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK----QEKNKLSHAKKIAEKESSHKSD 587
              E         I              D+++ +    + + ++ +  +  E  +     
Sbjct: 415 YKDERIDFWADNYIYPDRSHE-VVAIFEDVTQRELMLEELERRVKNRTEELEAANKELES 473

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           F   VSH++R PL AI GFS++I ++    L       Y  +I ++G  + D+++ LL+ 
Sbjct: 474 FAYSVSHDLRAPLRAINGFSKIISDRYMSSLPEEGQR-YLGFISKAGGDMSDLIDGLLEY 532

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707
           S+I  G+ ++H   + L   V + I+ +     E+   +  S   ++P + A+   +K+ 
Sbjct: 533 SRI--GRSSIHLNELPLKSIVDDCIATLNRRIEEEGAEV--SIITDLPTVYANQSLLKRA 588

Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
             N+L NA+ +   G + I+  +   +   V L + D G+G+ +   E+    F ++   
Sbjct: 589 VTNLLQNALTYHNVGSRPIVKISSKHHKGWVFLTIEDNGIGIEDRYHERIFNVFQRLH-- 646

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
                 GTG+GL + K  V    G   + S P KG+   +  
Sbjct: 647 TDEEFPGTGIGLSIVKKSVLLMGGDVSLESIPGKGSKFTLKI 688



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/247 (13%), Positives = 71/247 (28%), Gaps = 15/247 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT- 147
           +D    +   +E   +  G    +++G  L  + +    D      + L +     G+  
Sbjct: 223 LDLDYKVTSWNEAAEEIFGWKCSEVLGKPLPYILETQKEDYERMNVETL-KGLPVRGERF 281

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                +G  + + +  A  PI   N    G   FGI+      +      K  + +F  L
Sbjct: 282 AQRTKDGREIIIKVYNA--PIRDENGNLEGI--FGILEDVTEQHKAELALKESELRFRKL 337

Query: 208 HEIKKGHSS---VEKEKYDIFSQQSPPPHLRMK----NKVSSLTEYYAHKDDVLKTEKYP 260
           +       +   V  E  D+      P   R+      ++   +        V       
Sbjct: 338 YMNMNIGVAIYRVINEGDDVVFLDMNPSGCRITGVNREEILGRSVKAIFPSVVELGLYQR 397

Query: 261 LLTSEESSLPEQEDFHTINLNQY--TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
           L+   ++S P           +       Y    +++   +      +    L       
Sbjct: 398 LIEVWKTSRPMHHPVRRYKDERIDFWADNYIYPDRSHEVVAIFEDVTQRELMLEELERRV 457

Query: 319 ENLTPET 325
           +N T E 
Sbjct: 458 KNRTEEL 464


>gi|325110192|ref|YP_004271260.1| multi-sensor signal transduction histidine kinase [Planctomyces
           brasiliensis DSM 5305]
 gi|324970460|gb|ADY61238.1| multi-sensor signal transduction histidine kinase [Planctomyces
           brasiliensis DSM 5305]
          Length = 603

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 76/382 (19%), Positives = 168/382 (43%), Gaps = 23/382 (6%)

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
           +     + +   +++     +L ++L    +G+  ++ +  IL  N A  ++  +    +
Sbjct: 235 LSTRINELQQQGQQLRENSERLATVLGGMVEGVIAVDSKEQILFANDAAFRMIEFEARRV 294

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
           + +P+   +       +   + ++L+ + +   E   +   + +  ++            
Sbjct: 295 IGRPYWEVVRNTD---VQRVVRDVLAGEYQLQRE---INLARSQSRIAFIASRLPGEPCP 348

Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
              L +HD++E ++ +                +S+F++ V HE++TP+ AI   +E +  
Sbjct: 349 GVVLVLHDVTELRRLE--------------KIRSEFVSNVGHELKTPVAAIQACTETLFA 394

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
                        +   I      +  ++ DL++++KIES +     E + +   + EAI
Sbjct: 395 GAID--DPEDAGHFLQQITDHAERLHKLIIDLMELAKIESEEDAFRRESIDIGVPIQEAI 452

Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
                 A  K I +          +LADL  V+ I  N+L NA+++TP GGQ+ +  +  
Sbjct: 453 DEHYSVAQSKHIELTYKSTIEELPVLADLDGVRTIVNNLLDNALNYTPEGGQVRVEWS-Q 511

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
             ++V++ + DTG+G+    LE+  + F ++ +++     GTGLGL + K +     G  
Sbjct: 512 QGDDVLILISDTGMGIERKHLERIFERFYRVDSARSRDAGGTGLGLAIVKHLCQLFSGSI 571

Query: 793 YIFSTPAKGTLIEIIFPLYDTS 814
            + S P +G+   I FPL+  +
Sbjct: 572 DVTSEPNQGSTFSIRFPLHRPT 593


>gi|258623945|ref|ZP_05718898.1| sensor histidine kinase LuxQ [Vibrio mimicus VM603]
 gi|258583739|gb|EEW08535.1| sensor histidine kinase LuxQ [Vibrio mimicus VM603]
          Length = 857

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 79/371 (21%), Positives = 159/371 (42%), Gaps = 21/371 (5%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           R++  +  Q   +         + N  G ++  N +    F              FL + 
Sbjct: 350 RRLANKEKQFEDLFNFALSPTMLWNTAGRLIRMNPSAQVQFLREDAQ------NHFLFEI 403

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT-MHDISE 563
               +   +T          +         + ++    +    +       +T   D++ 
Sbjct: 404 LERQLLPMITYAAQGKNPSEVTTEV-----DGRVYRWNLSPIMVEGQIISIITQGQDVTS 458

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + + +   A++ AE+ +  +++FLA++SHE+RTPL  ++G S+++K            
Sbjct: 459 IAEAEKQSQVARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRTPL----TDEQ 514

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            E+   +  SG  +L ++ND+LD S++E GK  +      L E V     + +   N+K 
Sbjct: 515 REHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKSEFRLKELVCAIDRIYRPLCNDKG 574

Query: 684 ILIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EVIL 739
           I +       +   + +D   + QI  N+L+NAI FT  G  I ++      +   ++++
Sbjct: 575 IELVVESNITSATLVRSDQIRINQILFNLLNNAIKFTHQGS-IRVALELIEGDPLAQLVI 633

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
           +V DTG+G+   +L    +PF Q  ++      G+GLGL +  ++V+   G+ ++ S   
Sbjct: 634 QVMDTGIGIREEDLTVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHVSSEYG 693

Query: 800 KGTLIEIIFPL 810
            GT  EI  P+
Sbjct: 694 HGTRFEIQLPI 704


>gi|256840824|ref|ZP_05546332.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
 gi|301309911|ref|ZP_07215850.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
 gi|256738096|gb|EEU51422.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
 gi|300831485|gb|EFK62116.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
          Length = 423

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 101/386 (26%), Positives = 178/386 (46%), Gaps = 33/386 (8%)

Query: 446 KMEIEVMQ---------LCSILEATSDGIAIINR-EG-IILSTNRAVSKLFGYPVEDILR 494
           ++E+   Q         + +IL      I + +   G   +  N+A  +  G   EDIL 
Sbjct: 36  ELEMRQSQHTINFLNILMDTILSNVFVEITVKDIFNGFRYIYFNKAAEEFTGVKAEDILG 95

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK-----LLSLRIIIKKLP 549
           K        ++         +  ++   + ++++        +     ++ L I      
Sbjct: 96  KTDFELF-PDSRRAHEIRTEDYHTIKTGRMVKEMVEYEKPNGEVRIVNIVRLLITNPDPG 154

Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
            S    + ++DI+E +Q++  L   +    +    K+ F+A +SHEIRTPL AI+GF+ +
Sbjct: 155 ASPLLLVMLNDITEQRQDQLALMKVQ----EADKMKNAFIANMSHEIRTPLNAIVGFAHL 210

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           +              EY + I+++ +L+L ++ND+LD+SKIESG++N +   V L +   
Sbjct: 211 VTETTNAS----EQREYFSIINKNCDLLLKLINDILDLSKIESGRLNYNVSEVELRDICQ 266

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
           EA  +  L       L+  S A    R+  D   V+Q+ LN+LSNAI FT  G    IS 
Sbjct: 267 EAYVVQSLKMTSDVALLYNSVAMPSVRLWIDPHRVEQVLLNLLSNAIKFTSKG---FISL 323

Query: 730 THT-SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
            +   +  V + V DTG+G++  +LE   + F ++ +      +G GLGLP+ K +V+  
Sbjct: 324 FYEVEDMFVRVSVMDTGIGISEEKLESVFERFVKLDDF----YQGAGLGLPICKMIVEQL 379

Query: 789 MGKFYIFSTPAKGTLIEIIFPLYDTS 814
            G+  + S   KG+      PL  T 
Sbjct: 380 GGEIGVRSELGKGSTFWFTLPLVVTD 405


>gi|45657935|ref|YP_002021.1| histidine kinase sensor protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|45601176|gb|AAS70658.1| histidine kinase sensor protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 484

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 87/514 (16%), Positives = 188/514 (36%), Gaps = 58/514 (11%)

Query: 317 EGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIA------------ 363
             E      V+  P    +    G + Y N     L KY+  + I               
Sbjct: 5   HSELTFQLMVESVPNAILLLNRDGKIVYINNQAEKLFKYERTELIGQVVEELLPHRYRKN 64

Query: 364 --GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                ++   +PK+    A + +   + D T       L+ +       +  + I     
Sbjct: 65  HPTFRNSFFLSPKVRPMGAGRDLFGLKKDGTEFPIEIGLNPVVTADGTLVLASII----- 119

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
                         +  + +  ++       +   ++E+  + + ++N EG I   N   
Sbjct: 120 --------------DITERKKAEQ-------RFRLVVESAPNAMVLVNSEGTIALVNTQT 158

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLL 539
            KLFGY  E+++     + L +           +       +++   +      K    +
Sbjct: 159 EKLFGYEREELIGAKLEILLPERFREAHPDRRNQFFLSPTVRSMGAGRDLFARKKNGSEV 218

Query: 540 SLRIIIKKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
            + I +  +          ++ DI+E K ++  L   K   E ++     F    SH+++
Sbjct: 219 QVEIGLNPIDTDEGIMVLASIIDITERKNQETTL-IRKNELEVKNKELEQFAFLASHDLQ 277

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
            PL  +  + +V+  + +G   +     Y   ID++   +  +V  LL  ++I   +  L
Sbjct: 278 EPLRTVSNYIQVL-EEDYGNTFDSNATRYLKTIDQATKRMSVLVKALLMYARIGRDQ-KL 335

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
            F    L+  +SE +S ++         I    ++ +P +       +Q+  N++SNAI 
Sbjct: 336 VFT--DLNRILSEVLSDLENLILNSNAKI---ISDPLPSMNVYEVEFRQLIQNLISNAIK 390

Query: 718 FTPSG--GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           F+  G   +I I      +      V+D G+G+ +  +++    F  +    +   EG G
Sbjct: 391 FSKKGIDPEIRIRCEKEED-YCHFSVQDNGIGIDSKYVDRIFFIFQILH--LKEEYEGHG 447

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +GL   K +++ + G+ ++ S    G+    I P
Sbjct: 448 IGLAHCKKIIELHNGRIWVESDSEVGSNFHFIIP 481


>gi|322411349|gb|EFY02257.1| sensor histidine kinase [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 450

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 90/406 (22%), Positives = 164/406 (40%), Gaps = 36/406 (8%)

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDT-RINKRKMEIEVMQLCSILEATSDGIAIINREG 472
            +          E M       +  D  R+    +  E  +L SIL   SDG+   +R G
Sbjct: 55  RYTDMINEKADIELMELADQLNDLSDVFRLTHENLAQEKNRLASILAYMSDGVLATDRSG 114

Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
            I+  N    K      E  L K  T  LE +TP      +         +T        
Sbjct: 115 KIIMINETARKQLNLTKEQALEKNITDLLEGDTPYTYRELV--------SKTPVVTVNSR 166

Query: 533 TKEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
               + ++LR+        S +     + +HD +E ++E+ +                 F
Sbjct: 167 NDMGEFVTLRLRFALNRRESGFISGLVVVLHDTTEQEKEERERRL--------------F 212

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
           ++ VSHE+RTPLT++  + E +     G L       +        N ++ +++DLL++S
Sbjct: 213 VSNVSHELRTPLTSVKSYLEAL---DEGALKEDIAPSFIKVSLDETNRMMRMISDLLNLS 269

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR-----ILIRTSFANNIPRILADLRS 703
           +I++    L  E  +    ++  ++   L  N+         I   +      +  D   
Sbjct: 270 RIDNQVTQLSVEMTNFTAFMTSILNRFDLVKNQHTGTGKVYEIVRDYPITSVWLEIDNDK 329

Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
           + Q+  NIL+NAI ++P GG+I +    T   ++I+ + D G+G+   +L      F ++
Sbjct: 330 MTQVIENILNNAIKYSPDGGKITVRMKTTDT-QLIISISDQGLGIPKKDLPLIFDRFYRV 388

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             ++     GTGLGL +AK ++  + G  +  S   KG+   I+ P
Sbjct: 389 DKARSRAQGGTGLGLAIAKEIIKQHHGFIWAKSDYGKGSTFTIVLP 434


>gi|288959952|ref|YP_003450292.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
 gi|288912260|dbj|BAI73748.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
          Length = 687

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 92/514 (17%), Positives = 185/514 (35%), Gaps = 30/514 (5%)

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDD 359
           +  +     +             + +D              + Y N     +   + +  
Sbjct: 61  DVDAEAPPDAELDGGLRAWRQATDILDSIDEALVALDGEYRVIYQNRRAEQI-DQQPLAA 119

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
           I            P+++ ++         ++R       RL     + E +         
Sbjct: 120 IRGRRLWE---VWPQVAGSDLEALCRRTMTERQPTGVEKRL-----DGEGTTLWL----- 166

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
           +    P          +    +  + +      +   ILE+ SD    ++ +      NR
Sbjct: 167 EIRFLPTAEGVGCFFRDITTRKRAEEEARASHERAVKILESISDAFYAVDNDWRFTYINR 226

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
              +++G   + +L         +   S         +      T+E I+         +
Sbjct: 227 KAEQIWGRSRDTLLGLRTWEAFPKVLGSEAFEAQKRAVREGREMTIEVISPTL---GNWV 283

Query: 540 SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
              +       +   S+   DI+  +Q +  L  AK+ AE  +  K  FLA  SH++R P
Sbjct: 284 EASLYPS----ADGLSVYFRDITARRQAQQALLTAKETAEAANLAKGKFLAAASHDLRQP 339

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L A++ F +V+K    G  G         ++ R  + + ++++ LLD+S+++SG +    
Sbjct: 340 LQALLLFVDVLKPHVQGSQG----ATALMHLGRGLDALKELLDSLLDMSRLDSGVVEPTI 395

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719
           E VS+        +  +  A  K + +             D   + ++  N++ NA+ +T
Sbjct: 396 ETVSIAPLFEHIAASYRPVAAAKGLELHVD--PCAAAARTDRTLLIRMVRNLVENALRYT 453

Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
             G +I I     +   +++ VRDTG+G+    LE+    F Q+ N ++ R  G GLGL 
Sbjct: 454 EQG-RIDIECR-QAGGRLLIEVRDTGIGIPPDHLERIWDEFHQVGNPERDRNRGLGLGLA 511

Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
           + + +         + S P +GT   I  PL  T
Sbjct: 512 IVRRLSQLLNHPVEVRSKPGRGTSFIIALPLART 545



 Score = 57.3 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 39/546 (7%), Positives = 107/546 (19%), Gaps = 66/546 (12%)

Query: 50  EQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTV--RFTWNIDAHGYLKEISEELPKTIG 107
           +    +D + E+  +         +                +D    +   +    +   
Sbjct: 55  QSEIKSDVDAEAPPDAELDGGLRAWRQATDILDSIDEALVALDGEYRVIYQNRRAEQIDQ 114

Query: 108 NYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALP 167
                + G RL +V   +       +      +    G       +G    + +++  LP
Sbjct: 115 QPLAAIRGRRLWEVWPQVAGSDLEALCRRTMTERQPTGVEKRL--DGEGTTLWLEIRFLP 172

Query: 168 IYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ 227
                  F                      +   ++   + E            +     
Sbjct: 173 TAEGVGCF--------FRDITTRKRAEEEARASHERAVKILESISDAFYAVDNDWRFTYI 224

Query: 228 QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287
                  + +       +            K     + E+      +   + +   +   
Sbjct: 225 N-----RKAEQIWGRSRDTLLGLRTWEAFPKVLGSEAFEAQKRAVREGREMTIEVISPTL 279

Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPS 347
                 +    +     +    +      +      ET +   +       G    A   
Sbjct: 280 GNWVEASLYPSADGLSVYFRDITARRQAQQALLTAKETAEAANLA-----KGKFLAA--- 331

Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
                   +  D+        L            +           + A   L     + 
Sbjct: 332 --------ASHDLRQPLQALLLFVDVLKPHVQGSQGATALMHLGRGLDALKELLDSLLDM 383

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN--------KRKMEIEVMQLCSILE 459
               +    P  +                 V                   +   L  ++ 
Sbjct: 384 SRLDSGVVEPTIETVSIAPLFEHIAASYRPVAAAKGLELHVDPCAAAARTDRTLLIRMVR 443

Query: 460 ATSDGIAIINREGII-LSTNRAVSKLF--------GYPVEDI--LRKPFTVFLEQNTPSV 508
              +       +G I +   +A  +L         G P + +  +   F           
Sbjct: 444 NLVENALRYTEQGRIDIECRQAGGRLLIEVRDTGIGIPPDHLERIWDEFHQVGNPERDRN 503

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEK--------------LLSLRIIIKKLPFSSCY 554
               L   +   L Q L       +K  +                 +  +         +
Sbjct: 504 RGLGLGLAIVRRLSQLLNHPVEVRSKPGRGTSFIIALPLARTIETPVTAVEAATTGRGRF 563

Query: 555 SLTMHD 560
           ++ + D
Sbjct: 564 AVVVDD 569



 Score = 46.2 bits (108), Expect = 0.024,   Method: Composition-based stats.
 Identities = 35/399 (8%), Positives = 82/399 (20%), Gaps = 35/399 (8%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIG-MRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
           + +D       I+ +  +  G     ++G         +L  +         +++    G
Sbjct: 213 YAVDNDWRFTYINRKAEQIWGRSRDTLLGLRTWEAFPKVLGSEAFEA-----QKRAVREG 267

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI-VHVNRVDNDPRALGKRLDKKF 204
           +     +    L   ++ +  P            G  +           +       +  
Sbjct: 268 REMTIEVISPTLGNWVEASLYPSAD---------GLSVYFRDITARRQAQQALLTAKETA 318

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV-----SSLTEYYAHKDDVLKTEKY 259
              +  K    +          Q        +K  V     ++   +     D LK    
Sbjct: 319 EAANLAKGKFLAAASHDLRQPLQALLLFVDVLKPHVQGSQGATALMHLGRGLDALKELLD 378

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
            LL          E            +    + +     + + L     P  +A   +  
Sbjct: 379 SLLDMSRLDSGVVEPTIETVSIAPLFEHIAASYRP--VAAAKGLELHVDPCAAAARTDRT 436

Query: 320 NLTPETVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
            L     +           G +      +   L        I I       +        
Sbjct: 437 LLIRMVRNLVENALRYTEQGRIDIECRQAGGRLLIEVRDTGIGIPPDHLERIWDEFHQVG 496

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
           N  +                    I       L        K  +    +    +     
Sbjct: 497 NPERDRNRGLGLG---------LAIVRRLSQLLNHPVEVRSKPGRGTSFIIALPLARTIE 547

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
                         +   +++   D I ++  E I    
Sbjct: 548 TPVTAVEAATTGRGRFAVVVD--DDAIVLLGLETIFRDW 584


>gi|317151758|ref|YP_004119806.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316942009|gb|ADU61060.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 432

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 90/430 (20%), Positives = 178/430 (41%), Gaps = 32/430 (7%)

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GII 474
            P        E +   G            R    E+ +  ++L+  SD I ++N + G+I
Sbjct: 7   RPAPDPGAEREKLIGLGRRSIGKSYYPELRNRLDELERFRALLDRVSDAIFVVNADTGLI 66

Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
           +  + A   +     E +L  PF   L ++     ++     +S +      +    +T 
Sbjct: 67  VDFSGATLSMLDCGRESLLDMPFKGLLPEHIARYADNLFN--ISTETLSLETEFRHPATP 124

Query: 535 EEKLLSLRII--IKKLPFSSCYSLTMHDISEWKQEKNKLSHAK-----------KIAEKE 581
           +   + + +   I +        +   DISE K+ +  +  +            +   + 
Sbjct: 125 DRLPVPVEMTLRIVEHREVRQAIVVARDISERKRSEESMKKSHDELEVRVRERTRELARA 184

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEV----IKNQRFGPLGNPRYIEY----------A 627
           +  K++FL+ VSHE+RTPLT+IIGF+++    +  + F  +   R  +            
Sbjct: 185 NKAKTEFLSIVSHELRTPLTSIIGFAKIIRKKLAERVFPAVDRDRDPKLCKEMDRIGKNI 244

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
           + I+  G  +  ++ND+LD++K+E+ K+    EP++  E +  A+           +L  
Sbjct: 245 DIIEAEGERLTALINDVLDLAKLEANKVEYRMEPLAPAEFLRPAMDSSSALFQASEVLFL 304

Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747
                ++P+++ D   + Q+ +N+ SNA  FT  G  +           + + V DTG G
Sbjct: 305 NEVGPDLPQVMGDRHRLIQVMVNLFSNAAKFTRQGS-VTCRAELV-GAHLRVSVVDTGAG 362

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           +   +       F Q   S   R  GTGLGLP+ + ++  + G  ++ S P +G+     
Sbjct: 363 IPQEQQTSIFDKFIQGQESLTDRPTGTGLGLPICRQIIKDHQGHLWVESAPGQGSRFLFT 422

Query: 808 FPLYDTSHPH 817
            P+   + P 
Sbjct: 423 LPVIADAKPE 432


>gi|288942192|ref|YP_003444432.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
 gi|288897564|gb|ADC63400.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
          Length = 691

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 96/395 (24%), Positives = 155/395 (39%), Gaps = 32/395 (8%)

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAI--INREGIILSTNRAVSKLFGYPVEDILRKPF 497
                        +  ++ E     I++   +R   ++  N A + L+GY  E+ L +  
Sbjct: 9   RLNQHADDWHTETRFHALFEHI-QAISVQGYDRYRRVIYWNPASTALYGYRAEEALGRQL 67

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---Y 554
              +             +       Q           +   + +      L         
Sbjct: 68  EELIIPEAMRESMIAAVDSWVNGGEQISAGELTLKRADGSPVHVFSSHVMLRGPDGQSQM 127

Query: 555 SLTMHDISEWKQEKNKLSHAK------------------KIAEKESSHKSDFLARVSHEI 596
                D++E K+ + +L   +                    AE  +  KS FLA +SHEI
Sbjct: 128 YCVDVDLTERKRIQEELEGYRSHLEELVAERTAQLSEARAQAETANQAKSAFLANMSHEI 187

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTPL AI+G + ++   +     + R  +    I+ S N +L I+ND+LD+SKIE+GK  
Sbjct: 188 RTPLNAILGLTYLLIRDQS---SSERSRDILTKIEHSANHLLSIINDILDVSKIEAGKFT 244

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716
           LH +  S  +   +  SLV      KR+          P +  D   ++Q  LN LSNAI
Sbjct: 245 LHTQDFSTKDLFEQLDSLVLGQVAAKRLRFIRCIDALPPLLHGDQACLRQALLNYLSNAI 304

Query: 717 HFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
            FT +G +I +             V   V DTG+G+   +L +  +PF Q+ NS   R E
Sbjct: 305 KFTKAG-EIKLVAEILDETATDLLVRFDVYDTGIGIAPADLAQLFRPFSQVDNSVARRFE 363

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           GTGLGL +   +     G+    S   +G+   I 
Sbjct: 364 GTGLGLVITHRLAQLMGGETGAESQVGQGSRFWIT 398



 Score = 46.2 bits (108), Expect = 0.025,   Method: Composition-based stats.
 Identities = 16/181 (8%), Positives = 56/181 (30%), Gaps = 18/181 (9%)

Query: 94  YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTW--------YG 145
            +   +       G  A + +G +L ++       P      ++   ++W         G
Sbjct: 43  RVIYWNPASTALYGYRAEEALGRQLEELII-----PEAMRESMIAAVDSWVNGGEQISAG 97

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           + TL   +G+ ++  +  + + +   + +    + + +          +   +       
Sbjct: 98  ELTLKRADGSPVH--VFSSHVMLRGPDGQ---SQMYCVDVDLTERKRIQEELEGYRSHLE 152

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
            L   +    S  + + +  +Q        M +++ +          +L  ++     S 
Sbjct: 153 ELVAERTAQLSEARAQAETANQAKSAFLANMSHEIRTPLNAILGLTYLLIRDQSSSERSR 212

Query: 266 E 266
           +
Sbjct: 213 D 213



 Score = 44.6 bits (104), Expect = 0.076,   Method: Composition-based stats.
 Identities = 16/158 (10%), Positives = 43/158 (27%), Gaps = 10/158 (6%)

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN---LFYANPSFLLLTKYKSVDDI 360
           S +   +  A     E       +       V  +     + Y NP+   L  Y++ + +
Sbjct: 5   STQIRLNQHADDWHTETRFHALFEHIQ-AISVQGYDRYRRVIYWNPASTALYGYRAEEAL 63

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
                L  L+    + ++                A    L   + +       +     +
Sbjct: 64  GRQ--LEELIIPEAMRESMIAAVDSWVNGGEQISAGELTL--KRADGSPVHVFSSHVMLR 119

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458
                  M    +  +  + +  + ++E     L  ++
Sbjct: 120 GPDGQSQMYCVDV--DLTERKRIQEELEGYRSHLEELV 155


>gi|82702418|ref|YP_411984.1| multi-sensor signal transduction histidine kinase [Nitrosospira
           multiformis ATCC 25196]
 gi|82410483|gb|ABB74592.1| multi-sensor signal transduction histidine kinase [Nitrosospira
           multiformis ATCC 25196]
          Length = 662

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 93/580 (16%), Positives = 200/580 (34%), Gaps = 31/580 (5%)

Query: 236 MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL-PEQEDFHTINLNQYTKKQYFGTLQN 294
               V    E   +K   ++     +  + E  +             Q+         + 
Sbjct: 94  TSALVMPTPEIIRNKTAKVEKNIAEISRTWEEYIVTHLTPVEKKLAAQFAADHRKYVTEG 153

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKY 354
               +    +H+   +     ++   +        P+   +     L   N +     K 
Sbjct: 154 LLPATAALRAHKIGEANRILVEKIRPMY------LPVGESI-DALVLLQINEA-----KR 201

Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
           +  D+      +  +L A  +          L             +   +     +L   
Sbjct: 202 EYDDEQRRYETIRAILIASIVIALVLAVVFSLMFIRAIFQPLENVVRISRDVAAGNLRQE 261

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII 474
                  ++  + M       + +   I   ++        +++     G+  +N EG+I
Sbjct: 262 IEVPPSNDEISQLMGAVREMRDSLVETIG--QVRASEANTRALINNLIVGVVSVNAEGVI 319

Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK--ITLGS 532
            + N A+ ++FGY   +++ +       +     +  Y          Q   K    +G 
Sbjct: 320 KTGNPAMERIFGYSENELIGQNIGFLFPRPEHGQLTDYFKNYQENTKLQGPGKTNEVIGL 379

Query: 533 TKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
            K      L I + ++       + + + DISE K  + + +      E  +     F  
Sbjct: 380 RKNRATFPLDISVTEMHGQEHRMFVVILRDISERKHAEEQKAILMADLESANEELKSFAY 439

Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650
            VSH+++ PL AI   ++ +         +    E+   +    + + ++++ +L  S++
Sbjct: 440 VVSHDLKAPLRAIGALADWLSTDYLDKFDDE-GREHMRLLVSRVHRMGNLIDGILQYSRV 498

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710
             G++      V +DE + + I  +    N     +  +  N +P I+ +   ++QI  N
Sbjct: 499 --GRVREAPVEVKVDEVLRDVIDFIAPSPN-----VTITVENTLPSIVIEPTRIQQIFQN 551

Query: 711 ILSNAIHFTP-SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
           +LSNAI +      +I I       E     + D G G+ +   EK  + F  +  + + 
Sbjct: 552 LLSNAIKYMDKPQCEIRIGC-IAEGEHWRFSISDNGPGIESRHFEKIFQLFQTL--APRD 608

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           R E TG+GL L K +V+   G  ++ STP +GT      P
Sbjct: 609 RVESTGVGLTLVKKIVEMYGGSIWVESTPGEGTTFFFTLP 648


>gi|167906877|ref|ZP_02494082.1| two-component sensor kinase protein [Burkholderia pseudomallei NCTC
           13177]
          Length = 709

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 95/632 (15%), Positives = 206/632 (32%), Gaps = 26/632 (4%)

Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE 245
             R   D  A   + D          +     ++ +     +            + S   
Sbjct: 79  EIRKQFDALATLVQGDAVQQQRLATLRMLLEKKQHELAATIELRKTEGFDAAQAIVSSDA 138

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
                D           T ++     ++                G L      SF Y+  
Sbjct: 139 GKIFMDRARVMVNEMEATVQQQLRTLRDRARATRDIAIGVGLASGLLTLAVCVSFGYVMR 198

Query: 306 RNHPSLSAYFD---EGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIE 361
           R     +A      E   L   T+             G + + N     +T   +   + 
Sbjct: 199 RLLLVEAAAAHDLFEQRELLHVTLASIGDGVIATDVGGRITFFNRVAEEMTALCADAVVG 258

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                  L      +      P  +    R   +       +  +    L +        
Sbjct: 259 QPIEQ-VLTFRHAATQRVIDNPARVAVERRRTASLPPHTRFVGRSGGE-LPVDGNAAPTF 316

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
           +   + +    +  +  +    + +  +        +EA    + ++  +G I+  N   
Sbjct: 317 DANGKLVGAVLVVRDVSERERAEERFRLA-------VEAAPTAMIMVGCDGRIVLVNSQA 369

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLL 539
            KLFGY   D++     + + +   +    +          + +   +   G  ++    
Sbjct: 370 EKLFGYARGDMIGHGIDMLVPERFRAGHWAHRDAFFGSPDARPMGEGRDLFGLRRDGSEF 429

Query: 540 SLRIIIKKLPFSSCYSLT--MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
            + I +  +  S    +   + DI+  K+ + +L    +   + +     F    SH+++
Sbjct: 430 PVEIGLNPITTSEGAFVLCSIADITARKRAELELRRRSEELARSNQDLEQFAYVASHDLQ 489

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
            PL A+ G  ++++ +  G L + R  E+  +       +  +++DLL  S++  G++  
Sbjct: 490 EPLRAVAGPLQLLQRRYQGQL-DARADEFIGHAVDGATRMQSLIDDLLSYSRV--GRLED 546

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
              PV  +  + EA+  +     E    +       +P +      +  +  N++ NAI 
Sbjct: 547 ARRPVDCEHVLDEALRNLSAAIRESGAQVTHD---PLPTVHGIEAQLVLLFQNLIGNAIK 603

Query: 718 FTPSGGQIIIST-THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
           F        I    HT ++  +LRVRD G+G+     E+    F ++    +    GTGL
Sbjct: 604 FRSKDRVARIHLEAHTRDDAWLLRVRDNGIGIDPQYFERIFLIFQRLH--TRREYPGTGL 661

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           GL L K +V+ + G+ ++ S P +GT      
Sbjct: 662 GLALCKRIVEHHGGRIFVESEPGQGTTFSFTL 693



 Score = 51.2 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 28/308 (9%), Positives = 68/308 (22%), Gaps = 25/308 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI----GDLLKRQNTWY 144
            D  G +   +    +     A  ++G  +  V    H      I       ++R+ T  
Sbjct: 232 TDVGGRITFFNRVAEEMTALCADAVVGQPIEQVLTFRHAATQRVIDNPARVAVERRRTAS 291

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNR---VDNDPRALGKRLD 201
                  +  +   +P+D  A P +  N +  G     +V          +   L     
Sbjct: 292 LPPHTRFVGRSGGELPVDGNAAPTFDANGKLVGA--VLVVRDVSERERAEERFRLAVEAA 349

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
                +         V  +   +F            + +        H          P 
Sbjct: 350 PTAMIMVGCDGRIVLVNSQAEKLFGYARGDMIGHGIDMLVPERFRAGHWAHRDAFFGSPD 409

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
                            + +++  +     +  +       L      +     +     
Sbjct: 410 ARPMGEGR--DLFGLRRDGSEFPVEIGLNPITTSEGAF--VLCSIADITARKRAELELRR 465

Query: 322 TPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
             E + +                   F  +  +   + +    G   LL        +A 
Sbjct: 466 RSEELARSNQDL------------EQFAYVASHDLQEPLRAVAGPLQLLQRRYQGQLDAR 513

Query: 382 KPVMLYRS 389
               +  +
Sbjct: 514 ADEFIGHA 521



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/350 (10%), Positives = 76/350 (21%), Gaps = 19/350 (5%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL----KRQNTWYGKT 147
            G +  ++ +  K  G     MIG  +  +        +    D        +    G+ 
Sbjct: 359 DGRIVLVNSQAEKLFGYARGDMIGHGIDMLVPERFRAGHWAHRDAFFGSPDARPMGEGRD 418

Query: 148 TL-WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                 +G+    P+++   PI +    F        +             +R  ++ + 
Sbjct: 419 LFGLRRDGS--EFPVEIGLNPITTSEGAFV----LCSIADITARKRAELELRRRSEELAR 472

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
            ++  +  + V         +    P   ++ +     +  A +      +    + S  
Sbjct: 473 SNQDLEQFAYVASHDLQEPLRAVAGPLQLLQRRYQGQLDARADEFIGHAVDGATRMQSLI 532

Query: 267 SSLPEQEDFHTINLNQYTK---KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
             L        +   +            L+N S    E  +   H  L         L  
Sbjct: 533 DDLLSYSRVGRLEDARRPVDCEHVLDEALRNLSAAIRESGAQVTHDPLPTVHGIEAQLVL 592

Query: 324 ETVDKCPIPFFVYSHGN-----LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
              +         S        L         L + +             +    +    
Sbjct: 593 LFQNLIGNAIKFRSKDRVARIHLEAHTRDDAWLLRVRDNGIGIDPQYFERIFLIFQRLHT 652

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
               P                   I    E     TF          E  
Sbjct: 653 RREYPGTGLGLALCKRIVEHHGGRIFVESEPGQGTTFSFTLSRPGADETR 702


>gi|308273268|emb|CBX29871.1| hypothetical protein N47_F15660 [uncultured Desulfobacterium sp.]
          Length = 665

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 97/533 (18%), Positives = 173/533 (32%), Gaps = 72/533 (13%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFV--YSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
                   + E       +       +     G +   NP  L L  Y   +        
Sbjct: 34  ERTWETLQDSEKRYRRLFESAKDGILILDADTGKVVDVNPFLLHLLHYSYDELYGKYIWE 93

Query: 367 STLLDAPKLSDNN----------AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
             +L     S +             + + L   D   IA     +    +    +     
Sbjct: 94  LGILKDIAASKDAFKALQDNEYIRYEDLPLETHDGQPIAVEFVSNVYLVDHSKVIQCNIR 153

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476
                                      +++ E E  +L + LE   + I I + +GII  
Sbjct: 154 DIT-----------------------ARKRAEAERKRLMAALEQAGEAIVITDAQGIIQF 190

Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
            N A  +  GY  E+ + +   +        +    L + +S     T   + +   K+ 
Sbjct: 191 VNPAFERTTGYSREEAVGRNPRILKSGEQNELFYRNLWDTISGGKTWTS--LIVNKRKDG 248

Query: 537 KLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
            L +    I  +  SS     Y     DI+E  +   +  HA+K+              V
Sbjct: 249 TLYTEETTISPVRDSSDRIVNYVAVKRDITERLRLAAQFQHAQKM-----EAAGLLAGGV 303

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           +H+    L  I+G++E+  ++    L           I ++    +DI   LL  ++   
Sbjct: 304 AHDFNNMLNVILGYTELAMDKTDTDLP---LHADLEEIHKAAIRSMDITRQLLTFAR--- 357

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712
            K  +    ++L++ V   I +++     + I +      +   I  D   + QI  N+ 
Sbjct: 358 -KQTIIPVVLNLNQTVESMIKMLRHLM-GEDIDLAWLSGADPCPIKMDPSQIDQILANLC 415

Query: 713 SNAIHFTPSGGQIIIS--------------TTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
            NA       G++ I               T   + E V+L V D G GM    L +  +
Sbjct: 416 VNARDAITGVGKVTIETGNAVFDEIYCAGHTGFVAGEYVLLSVSDDGCGMDKEILNQIFE 475

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
           P+          G+GTGLGL     +V  N G   ++S P KGT   I  P +
Sbjct: 476 PYFTSK----EIGQGTGLGLSTVYGIVKQNNGFINVYSEPGKGTTFRIYLPRH 524



 Score = 64.3 bits (155), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 25/265 (9%), Positives = 62/265 (23%), Gaps = 6/265 (2%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKRQNTWYGKT 147
            DA G ++ ++    +T G    + +G     + S   +     ++ D +    TW    
Sbjct: 182 TDAQGIIQFVNPAFERTTGYSREEAVGRNPRILKSGEQNELFYRNLWDTISGGKTWTSLI 241

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                +GT       ++  P+   +     +    +           A  +   K  +  
Sbjct: 242 VNKRKDGTLYTEETTIS--PVRDSSDRIVNY--VAVKRDITERLRLAAQFQHAQKMEAAG 297

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
                           I             +          HK  +   +    L +   
Sbjct: 298 LLAGGVAHDFNNMLNVILGYTELAMDKTDTDLPLHADLEEIHKAAIRSMDITRQLLTFAR 357

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
                     +N    +  +    L     +   +LS  +   +     + + +      
Sbjct: 358 KQTIIPVVLNLNQTVESMIKMLRHLMGEDIDL-AWLSGADPCPIKMDPSQIDQILANLCV 416

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLT 352
                        +   N  F  + 
Sbjct: 417 NARDAITGVGKVTIETGNAVFDEIY 441



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/222 (7%), Positives = 57/222 (25%), Gaps = 18/222 (8%)

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGG 365
              +     +         +++      +    G + + NP+F   T Y   + +    G
Sbjct: 153 RDITARKRAEAERKRLMAALEQAGEAIVITDAQGIIQFVNPAFERTTGYSREEAV----G 208

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
            +  +      +    + +    S          L   +                 +   
Sbjct: 209 RNPRILKSGEQNELFYRNLWDTISGGKTW---TSLIVNKRKDGTLYTEETTISPVRDSSD 265

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
             +    ++ +  +      + +    ++ +       G+      G+    N  ++ + 
Sbjct: 266 RIVNYVAVKRDITERLRLAAQFQ-HAQKMEAA------GLL---AGGVAHDFNNMLNVIL 315

Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
           GY    + +    + L  +   +    +  +       T  +
Sbjct: 316 GYTELAMDKTDTDLPLHADLEEIHKAAIRSMDITRQLLTFAR 357


>gi|237746428|ref|ZP_04576908.1| two-component hybrid sensor kinase/response regulator [Oxalobacter
           formigenes HOxBLS]
 gi|229377779|gb|EEO27870.1| two-component hybrid sensor kinase/response regulator [Oxalobacter
           formigenes HOxBLS]
          Length = 1070

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 128/725 (17%), Positives = 241/725 (33%), Gaps = 59/725 (8%)

Query: 117 RLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVP--IDLAALPIYSRNRE 174
           R  +V+      P      +      +  +     + G +  +   + L    I  + RE
Sbjct: 90  RFMEVTYP-WRHPAVGEMHVRCGGKLFSRQGDEIELRGYHQNISELVQLQRDNIR-KERE 147

Query: 175 FSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL 234
                      + R      AL + +         +  G    +    +        P  
Sbjct: 148 LE--------EIGREKERYNALFESVMCGIVQYRLLANGRVVFKSANSEAIRIFGYTPEA 199

Query: 235 RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294
                  +L +  A +D      +   L     S P +      + +          L +
Sbjct: 200 FWAVGEWNLEDLVAPEDWEDIRREISRLEKVGDSSPFEYRLRKRDGSPCWIIGRAEILVD 259

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKY 354
              E+  + S       S   +    L     ++      +           +F      
Sbjct: 260 EEGEA-VFRSVFLDIDESKKAEIENAL---LAEQVQAGNALLRL--ALEYTQAFEFFYYP 313

Query: 355 KSVDDI------------EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT 402
           +S   I                G+        +   +    + +Y       A       
Sbjct: 314 ESRLCIIPERTQTHYGCKARYAGMPESFADDFVDGTSRDGFMAMY---DRIHAGEKTASA 370

Query: 403 IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
               R  ++              +     GI  +    +  + +          IL    
Sbjct: 371 DFRGRNRNVWCRVTLSTVTFSEGKPAYVVGIVEDVTREKTFELENTELHGIYDYILNTDY 430

Query: 463 DGIAIINRE-GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
           D + + + E G         S  F      +  +            V       +     
Sbjct: 431 DLMGVADLEKGQYSL---RFSDKFDDRGMPLKGEIVQGNDWMLERFVHPDDRARMAREWA 487

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFS---------SCYSLTMHDISEWKQEKNK-- 570
            +T+      S              +             +   LT  DI + ++++ +  
Sbjct: 488 VETVLSALEKSDSYTYYFRSDDDPPRYKEGKLSYFRGQKNRLLLTFRDIHDVREKEERVR 547

Query: 571 --LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
             L+ A K+AEK ++ KSDFL+++SH++RTP+  IIG + +    R  P    R  EY  
Sbjct: 548 QTLTDALKVAEKANNAKSDFLSKMSHDMRTPMNGIIGLAMIAGQHRHEP---ERMKEYLT 604

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I  +   +L ++ND+LD+SKIE+G++ L  E   +   + + + +V   A  +R  IR 
Sbjct: 605 KISVASRHLLGLINDVLDMSKIEAGRIVLVEEDFDVVALLRDVVDIVAPDARGRRHAIRF 664

Query: 689 SFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN-----EEVILRVR 742
                + P +  D   ++Q+ +N+LSNA+ FTP GG I +S + T++             
Sbjct: 665 EVDETVFPFVKGDSLRLQQVFMNLLSNALKFTPEGGHIGVSVSETASPFDGYGAYRFVFS 724

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G+GM+   ++K   PF +  NS   R  GTGLG+P++KA+V+   G   + S   +GT
Sbjct: 725 DDGIGMSPAFMDKLFSPFEREENSMTSRVSGTGLGMPISKAIVEMMNGTIDVESERGRGT 784

Query: 803 LIEII 807
           +  + 
Sbjct: 785 VFTVT 789


>gi|182414367|ref|YP_001819433.1| PAS/PAC sensor signal transduction histidine kinase [Opitutus
           terrae PB90-1]
 gi|177841581|gb|ACB75833.1| PAS/PAC sensor signal transduction histidine kinase [Opitutus
           terrae PB90-1]
          Length = 401

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 74/390 (18%), Positives = 155/390 (39%), Gaps = 26/390 (6%)

Query: 423 QFPENMPQNGIEPEDVDTRINKRKME-IEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
           Q            E  + +    + E  +  ++ ++L++  +G+ +++  G I   N A 
Sbjct: 20  QARRREEVARHAREVAELKERFEETEHAQTARMEAMLDSMIEGLIVLDATGRIARVNEAA 79

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
             +FG                    ++         +    + +E+       + ++L +
Sbjct: 80  ETMFGMSRMMAGGTLLEAVRHHEVAALAA------RAAKEAKAIEQEIRIERPQPRVLQV 133

Query: 542 RIII--KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
            ++             L  HD++  +Q +              + + DF+A VSHE+RTP
Sbjct: 134 SVVALRSPTGAEVGTVLVFHDVTRLQQLE--------------AIRQDFVANVSHELRTP 179

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L+ I   +E + +   G         +   ID+  N +  +++DLL +SK+++ ++ L  
Sbjct: 180 LSLIKSAAETLLDG--GKNDPAVNARFLEIIDKHANRLSLLIDDLLTLSKLDAERVELDI 237

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719
             V L  AV +A+      A  + I +       +     D   ++Q+  N++ NAI + 
Sbjct: 238 RSVGLRAAVQDALDDALTLAQPRAIALENQVPVGL-SAKVDAAKLRQVLGNLIENAIKYG 296

Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
              G++++    T    V + V D G G+      +  + F ++  ++     GTGLGL 
Sbjct: 297 RERGRVVVQGRATGAAMVEIAVCDDGPGIPAEARSRVFERFYRVDKARSREQGGTGLGLS 356

Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           + K +V A+ G+  + S   +G       P
Sbjct: 357 IVKNLVQAHGGEVRVESELGRGARFFFTLP 386


>gi|187478274|ref|YP_786298.1| two component sensor kinase for capsular biosynthesis [Bordetella
           avium 197N]
 gi|115422860|emb|CAJ49388.1| putative two component sensor kinase for capsular biosynthesis
           [Bordetella avium 197N]
          Length = 1142

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 125/658 (18%), Positives = 221/658 (33%), Gaps = 64/658 (9%)

Query: 178 FRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK 237
            R    V+        R     L  +   L  +             +   +       M 
Sbjct: 130 AREMVAVNAIMAARISRESIAYLVSRDRKLMVLSASPWQNVPWMSRLVESR-----REML 184

Query: 238 NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297
              +SL E  A+    L+ E  P L +     P           +       G     + 
Sbjct: 185 ESTASLAEQLANPPSSLRHEAVPGLPTLHWLPPYDSPLTGQRAIRIAADIRGGDGNTLAT 244

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSV 357
             FE        +L     +G + T    D    P      G                  
Sbjct: 245 AVFELPLATLAATLP---HDGPDGTCLIFDAGQRPVLSCRKG------------------ 283

Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
                 G    LL   +   N       L   +   +AA   L +  W    + +   I 
Sbjct: 284 ------GLPENLLVIEQAVANGLGTSAQLAYREGEVLAA-WTLGSSHWTLVYTQSWRNIA 336

Query: 418 FEKANQFPENMPQNGIE------------PEDVDTRINKRKMEIEVMQL-CSILEATSDG 464
                Q   ++   G+                    I + +   E   L  ++++    G
Sbjct: 337 SAIGPQLMTSVAAAGLIIVTCWSFLLLLKWRVFIPAIAQSQRVFENEHLGRTLVDTAPVG 396

Query: 465 IAIIN-REGIILSTNRA---VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520
           + +I    G  L  + A            + +  +    FL        + Y   +    
Sbjct: 397 LGLIAIHSGKPLLRSPAMMDADAQLLTSRQGLSGELAAQFLLHENQPAPHDYPGALQ--- 453

Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
               L+          + LS+R+   +            D++  KQ +     A+  A+ 
Sbjct: 454 ----LDLRFPTIDGSHRDLSVRMARARYEGVDVLVAAFTDVTLEKQMERVSQEARHAADS 509

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            ++ KS FLA +SHEIRTPL AI G  E++ +             + + I  + + +L I
Sbjct: 510 ANAAKSAFLAAMSHEIRTPLNAIHGNLELLSHSALDSA----QRAHVDTIRSASDSLLSI 565

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILA 699
           V+D+LD SKIE+G++ L      + +  + A+ +    A  K +++   F  +    +  
Sbjct: 566 VSDVLDFSKIEAGELRLEHLEYDIQDIAARALIMFSTTARAKGLVLGGEFGLHTTQPMRG 625

Query: 700 DLRSVKQIALNILSNAIHFTPSGGQIIIS-TTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
           D   V Q+  N+LSNA+ FT +G ++ +  T   +  +++L V D+G+GM+  ++    +
Sbjct: 626 DPTRVAQVINNLLSNAVKFTAAG-KVTLRMTQDATPPQLVLTVEDSGIGMSPEQMSMLFQ 684

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
            F Q   +   R  GTGLGL L   +  A  G   + S   +G+   +  PL     P
Sbjct: 685 AFTQADITINRRFGGTGLGLALCSRLSQAMGGTLSVTSKAGQGSCFTLRLPLDRDLPP 742


>gi|117622661|ref|YP_851574.1| phosphate regulon sensor protein [Escherichia coli APEC O1]
 gi|115511785|gb|ABI99859.1| phosphate regulon sensor protein PhoR [Escherichia coli APEC O1]
 gi|323952989|gb|EGB48857.1| phosphate regulon sensor kinase PhoR [Escherichia coli H252]
          Length = 431

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 73/427 (17%), Positives = 151/427 (35%), Gaps = 37/427 (8%)

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             +L       I     L  + W     L +         +        G+    +  + 
Sbjct: 33  WFLLASVTGLLIWHFWNLLRLSW----WLWVDRSMTPPPGRGSWEPLLYGLHQMQLRNKK 88

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            +R++   + +  S  E+  D + +   EG I   N    ++ G    +   +     L 
Sbjct: 89  RRRELGNLIKRFRSGAESLPDAVVLTTEEGGIFWCNGLAQQILGLRWPEDNGQNILNLLR 148

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
               +               +   +         + L +R++           +   D++
Sbjct: 149 YPEFTQYLKM----------RDFSRPLNLVLNTGRHLEIRVMPYTHKQ---LLMVARDVT 195

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  Q +                + +F A VSHE+RTPLT + G+ E++  Q        +
Sbjct: 196 QMHQLEG--------------ARRNFFANVSHELRTPLTVLQGYLEMMDEQPLEGAVREK 241

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                + +      +  +V  LL +SKIE+   +L  E V +   +       Q  + +K
Sbjct: 242 A---LHTMREQTQRMEGLVKQLLTLSKIEAAPTHLLNEKVDVPMMLRVVEREAQTLSQKK 298

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           +        N + ++  +   ++    N++ NA++ TP G  I +      +      V 
Sbjct: 299 Q-TFTFEIDNGL-KVSGNEDQLRSAISNLVYNAVNHTPEGTHITVRWQRVPHG-AEFSVE 355

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G G+    + +  + F ++  ++  +  G+GLGL + K  V+ +  +  I ST  KGT
Sbjct: 356 DNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHAVNHHESRLNIESTVGKGT 415

Query: 803 LIEIIFP 809
               + P
Sbjct: 416 RFSFVIP 422


>gi|147677932|ref|YP_001212147.1| hypothetical protein PTH_1597 [Pelotomaculum thermopropionicum SI]
 gi|146274029|dbj|BAF59778.1| hypothetical protein [Pelotomaculum thermopropionicum SI]
          Length = 621

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 69/268 (25%), Positives = 133/268 (49%), Gaps = 15/268 (5%)

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS---EVIKNQRFG 616
           +I+E K+ +  L  + +   +    K+DFL+ VSHE+RTPLT+++GF+   +    +   
Sbjct: 116 EITERKKVEEALRQSNEKLTELDELKTDFLSTVSHELRTPLTSVLGFAKITQKRLEEHIF 175

Query: 617 PL----------GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
           PL             +  +    I   G  + +++ND+LDI+K+E+GK+    E +S+ +
Sbjct: 176 PLIISTDRRIEKTVKQVKDNLEIIVSEGERLTELINDVLDIAKLEAGKIEWKMEKLSMAD 235

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726
            +  A +       +K +         +P +  D   + Q+ +N++SNA+ FT  G  + 
Sbjct: 236 VIERATAASSYLFEQKGLAFFKEIEEGLPDLTGDRDRLIQVIINLISNAVKFTNEGS-VT 294

Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
                   +E+ + V DTG+G+   + E+  + F Q   +   + +GTGLGL + K +V+
Sbjct: 295 CRARMI-GDEITVSVIDTGIGIAREDHERIFEKFKQAGETLTDKPKGTGLGLAICKQIVE 353

Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
            + G+ ++ S P KG+      P+   +
Sbjct: 354 HHGGRIWVESEPGKGSSFSFALPVSRQA 381


>gi|220917584|ref|YP_002492888.1| PAS/PAC sensor hybrid histidine kinase [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219955438|gb|ACL65822.1| PAS/PAC sensor hybrid histidine kinase [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 761

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 90/600 (15%), Positives = 177/600 (29%), Gaps = 44/600 (7%)

Query: 238 NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297
            +V                            +       T+N  +   +     +     
Sbjct: 49  EQVLGEHIVSLFPGTRDMALAMHARARAGHRVEVPRHAQTVNGRETWWEGSIAPVAMEGG 108

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTP---ETVDKCPIPFFVYSH-GNLFYANPSFL---- 349
                 +               + T      +   P    + +    +  AN  +     
Sbjct: 109 TGLLITAREVRSGPGEQPPGCASCTEVVDRLLACVPEGITIATGPDVVTIANSRYAEERL 168

Query: 350 -----LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
                          +         L   K        P+          +       ++
Sbjct: 169 LGSWNRSVGLSMEQWLARV---EHYLPDGKTPAAVEDLPLWRATRRGE--SVRDAELVVR 223

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
                 +++T       +   + +       +  + R  +  +     +   + EA    
Sbjct: 224 RPDGTRMSVTCNAEPVRDAAGDVVGGIVAWRDVTEQRRQQAALRTTEERFRLLAEAMPQI 283

Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
           + ++  +G +   NRA +   G  V    R  +   L  +             +L   + 
Sbjct: 284 VCVLAPDGAVELVNRAWTTFSGLDVAATARTGWERVLHPDDVQAAREC--RYQALKRLEP 341

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM---HDISEWKQEKNKLSHAKKIAEKE 581
            +        +         +  +         +    DI   K+ + +L  A     + 
Sbjct: 342 QDVELRYRAADGTYRWFLSRLAPVVEGGRVVRFIGAGMDIERRKRAEAELRDANAKLVEA 401

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
              K +FL  +SHE+R PL  I   S ++++   G     R       I+R    +  +V
Sbjct: 402 DRRKDEFLGMLSHELRNPLAPIRNSSFILRHAAPGSDAASRAQ---QVIERQTGHLTHLV 458

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701
           +DLLD+++I  GK+ L    V L E V  A    +L  +++ +  R S      R   D 
Sbjct: 459 DDLLDVTRISRGKIELRRSTVDLREVVLRAAEDFRLPLDDRGVSFRASVPEAPVRAHVDA 518

Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761
             + Q+  N+L+NA  FT  G ++I+S T     E  +RVRDTG G+    L    +PF 
Sbjct: 519 TRITQVVGNLLTNAAKFTRRGDEVIVSLTVEE-GEAAIRVRDTGAGIDPAILASIFQPFV 577

Query: 762 QIPNSQQIRG--------EGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFPLYD 812
           Q   +                       + + + + G   + S    +G    +  PL  
Sbjct: 578 QGERTLARSEGGLGLGLAL--------VRGIAELHGGAASVTSEGKGRGAEFLVRLPLGQ 629



 Score = 73.5 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/382 (8%), Positives = 91/382 (23%), Gaps = 30/382 (7%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN--------T 142
             G +  ++    ++ G    +++G  +  +                            T
Sbjct: 29  PDGTIVRVNAPWLRSTGFTHEQVLGEHIVSLFPGTRDMALAMHARARAGHRVEVPRHAQT 88

Query: 143 WYGKTTLWPIEGTNLYVPID--LAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
             G+ T W  EG+   V ++     L      R   G +  G      V +   A     
Sbjct: 89  VNGRETWW--EGSIAPVAMEGGTGLLITAREVRSGPGEQPPGCASCTEVVDRLLACVP-- 144

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
           +             ++    +  +    +    L M+  ++ +  Y          E  P
Sbjct: 145 EGITIATGPDVVTIANSRYAEERLLGSWNRSVGLSMEQWLARVEHYLPDGKTPAAVEDLP 204

Query: 261 LLTSEESSLPEQED---FHTINLNQYTKKQYFGTLQNNSKES----FEYLSHRNHPSLSA 313
           L  +       ++        +  + +       +++ + +       +          A
Sbjct: 205 LWRATRRGESVRDAELVVRRPDGTRMSVTCNAEPVRDAAGDVVGGIVAWRDVTEQRRQQA 264

Query: 314 YFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                E       +  P    V +  G +   N ++   +            G   +L  
Sbjct: 265 ALRTTEERFRLLAEAMPQIVCVLAPDGAVELVNRAWTTFSGLDVAAT--ARTGWERVLHP 322

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
             +      +   L R +   +         +                       +   G
Sbjct: 323 DDVQAARECRYQALKRLEPQDVEL-----RYRAADGTYRWFLSRLAPVVEG-GRVVRFIG 376

Query: 433 IEPEDVDTRINKRKMEIEVMQL 454
              +    +  + ++     +L
Sbjct: 377 AGMDIERRKRAEAELRDANAKL 398



 Score = 47.7 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 11/105 (10%), Positives = 32/105 (30%), Gaps = 2/105 (1%)

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           + +  + G+ ++  +G I+  N    +  G+  E +L +             +  +    
Sbjct: 16  LFDEAAVGLCLVAPDGTIVRVNAPWLRSTGFTHEQVLGEHIVSLFPGTRDMALAMHARAR 75

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDI 561
               +       T+     E      I    +   +   +T  ++
Sbjct: 76  AGHRVEVPRHAQTVN--GRETWWEGSIAPVAMEGGTGLLITAREV 118



 Score = 45.0 bits (105), Expect = 0.053,   Method: Composition-based stats.
 Identities = 17/246 (6%), Positives = 44/246 (17%), Gaps = 9/246 (3%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150
             G ++ ++       G             V     +           ++         +
Sbjct: 289 PDGAVELVNRAWTTFSGLDVAATARTGWERVLHPDDVQAARECRYQALKRLEPQDVELRY 348

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIV-----HVNRVDNDPRALGKRLDKKFS 205
                           P+         F G G+             D  A     D++  
Sbjct: 349 RAADGTYR-WFLSRLAPVV-EGGRVVRFIGAGMDIERRKRAEAELRDANAKLVEADRRKD 406

Query: 206 HLHEIKKGHSSVEKEKYDIFSQ--QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
               +               S   +   P     ++   + E        L  +   +  
Sbjct: 407 EFLGMLSHELRNPLAPIRNSSFILRHAAPGSDAASRAQQVIERQTGHLTHLVDDLLDVTR 466

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
                +  +     +        + F    ++   SF                    +  
Sbjct: 467 ISRGKIELRRSTVDLREVVLRAAEDFRLPLDDRGVSFRASVPEAPVRAHVDATRITQVVG 526

Query: 324 ETVDKC 329
             +   
Sbjct: 527 NLLTNA 532


>gi|320157836|ref|YP_004190214.1| signal transduction histidine kinase [Vibrio vulnificus MO6-24/O]
 gi|326424352|ref|NP_763089.2| signal transduction histidine kinase [Vibrio vulnificus CMCP6]
 gi|319933148|gb|ADV88011.1| signal transduction histidine kinase [Vibrio vulnificus MO6-24/O]
 gi|319999740|gb|AAO08079.2| Signal transduction histidine kinase [Vibrio vulnificus CMCP6]
          Length = 646

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 77/254 (30%), Positives = 126/254 (49%), Gaps = 10/254 (3%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           +   +    +L  AK+ AE  +  KS+FLA +SHEIRTP+  IIG + ++K         
Sbjct: 221 VERLRSNYAELKSAKEQAEVANVKKSEFLATMSHEIRTPMNGIIGVASLLKEMELSS--- 277

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
               +Y   I+ S   +LDI+ND+LD SKIE+GKM +  EP  L + V +  ++  L A+
Sbjct: 278 -EQKQYVEMINHSSESLLDIINDILDFSKIEAGKMAISLEPFCLSDLVEQMCAIYTLKAH 336

Query: 681 EKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---- 735
            K +      A ++P  +  D + +KQ+  N+L NA+ FT  G  + +      +     
Sbjct: 337 AKNLQFVVELAEDVPHTMSGDSKHLKQVLNNLLGNAVKFTERG-YVKLVVAKELDAQHIP 395

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            +  +V D+G+G+   + E   + F Q   S   +  GTGLGL + + +V    G+  + 
Sbjct: 396 HIRFQVFDSGIGIAKEKQELVFERFQQADGSTTRKYGGTGLGLAICRRLVSLMGGELELK 455

Query: 796 STPAKGTLIEIIFP 809
           S    G+  E   P
Sbjct: 456 SEVGLGSCFEFSVP 469


>gi|224369511|ref|YP_002603675.1| two-component protein, sensory box histidine kinase/response
           regulatory protein [Desulfobacterium autotrophicum HRM2]
 gi|223692228|gb|ACN15511.1| two-component protein, sensory box histidine kinase/response
           regulatory protein [Desulfobacterium autotrophicum HRM2]
          Length = 1065

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 87/534 (16%), Positives = 181/534 (33%), Gaps = 48/534 (8%)

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364
            +         E E      V+        V + G   + +PS+  +   K  + +    
Sbjct: 421 TDRRQAEKTLGESEAKYRLLVENQTDMVVKVDTEGRFLFVSPSYCKVFDKKEEELLGQKF 480

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
                    +    +  K +    S         R  T     E    + ++     +  
Sbjct: 481 M----HLVHEEDQESTAKAMETLLSPPHTAYMEQRALTK----EGWRWLAWVDTAVLDDD 532

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
            +     G+  +    +  +  +     +  +  +AT+  I I+++   ++ +N+     
Sbjct: 533 GKITEIIGVGRDITKRKQMEDSLLRISQEWQTTFDATNSVIWILDKNQQVVRSNKTAEHF 592

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
           F   ++ ++ K     +      +    L +         L + T+     E    + + 
Sbjct: 593 FKKSIDQMIGKQCWEIVHGTDLPIDECPLNKARES-----LRRETMDLQIGEGWFEIAVD 647

Query: 545 IKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS--DFLARVSHEIRTPL 600
                          + DI+E K+ + + +  +    +    +S       V+H+    L
Sbjct: 648 PFLDSAGQFSGAVHIITDITERKRAEAEKTKLEAQYRQAQKMESVGRLAGGVAHDYNNAL 707

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
           + I+G++E+  ++       P Y +  N + ++     DI   LL  ++    K  +  +
Sbjct: 708 SVIMGYTEMAIDKIDPV--EPLYAD-LNEVLKAARRATDITRQLLAFAR----KQVIAPK 760

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720
            V L+E V   + ++Q     + I +       +  I  D   + QI  N+  NA     
Sbjct: 761 VVDLNETVEAMLKMLQRLI-GEDITLAWLPGPELWPIKMDPSQIDQILANLCVNARDAIT 819

Query: 721 SGGQIIISTTHT--------------SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
             G++ I T                   E V+L + D G GM         +PF    + 
Sbjct: 820 EVGKVTIETKMETFDTAYCADHQGFIPGEFVMLILSDNGCGMHEEIRNNIFEPFFTTKS- 878

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820
              + +GTGLGL     +V  N G   ++S P  GT  ++ FP ++     DCI
Sbjct: 879 ---KDKGTGLGLATVYGIVKQNSGFINVYSEPGIGTTFKLYFPRHEG----DCI 925



 Score = 80.8 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 31/308 (10%), Positives = 78/308 (25%), Gaps = 16/308 (5%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD-LLKRQNTWYGK 146
            +D  G    +S    K       +++G +   +      +      + LL   +T Y +
Sbjct: 450 KVDTEGRFLFVSPSYCKVFDKKEEELLGQKFMHLVHEEDQESTAKAMETLLSPPHTAYME 509

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                 EG      +D     +   + + +   G G                R+ +++  
Sbjct: 510 QRALTKEGWRWLAWVD---TAVLDDDGKITEIIGVG--RDITKRKQMEDSLLRISQEWQT 564

Query: 207 LHEIKKGHSSVEK---EKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
             +       +     +               +   +        H  D L  ++ PL  
Sbjct: 565 TFDATNSVIWILDKNQQVVRSNKTAEHFFKKSIDQMIGKQCWEIVHGTD-LPIDECPLNK 623

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
           + ES   E  D           +       +++ +    +      +     +  +    
Sbjct: 624 ARESLRRETMDLQIGEG---WFEIAVDPFLDSAGQFSGAVHIITDITERKRAEAEKTKLE 680

Query: 324 ETVDKCP--IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
               +          + G     N +  ++  Y  +  I+    +  L          A 
Sbjct: 681 AQYRQAQKMESVGRLAGGVAHDYNNALSVIMGYTEM-AIDKIDPVEPLYADLNEVLKAAR 739

Query: 382 KPVMLYRS 389
           +   + R 
Sbjct: 740 RATDITRQ 747



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/177 (14%), Positives = 58/177 (32%), Gaps = 10/177 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            W +D +  +   ++           +MIG +  ++     +  +     L K + +   
Sbjct: 573 IWILDKNQQVVRSNKTAEHFFKKSIDQMIGKQCWEIVHGTDLPIDE--CPLNKARESLRR 630

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +T    I         ++A  P      +FSG     I+          A   +L+ ++ 
Sbjct: 631 ETMDLQIGEG----WFEIAVDPFLDSAGQFSGA--VHIITDITERKRAEAEKTKLEAQYR 684

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
              +++          +D  +  S          +K+  +   YA  ++VLK  +  
Sbjct: 685 QAQKMESVGRLAGGVAHDYNNALSVIMGYTEMAIDKIDPVEPLYADLNEVLKAARRA 741


>gi|319956297|ref|YP_004167560.1| histidine kinase [Nitratifractor salsuginis DSM 16511]
 gi|319418701|gb|ADV45811.1| histidine kinase [Nitratifractor salsuginis DSM 16511]
          Length = 822

 Score =  298 bits (762), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 82/255 (32%), Positives = 121/255 (47%), Gaps = 10/255 (3%)

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
            K    ++ A   +  K  FLA +SHEIRTPL  I+GF ++++        N    E+  
Sbjct: 303 EKADKERRSALDTARAKDLFLANMSHEIRTPLNGIVGFIQLLETTPL----NEEQREFIR 358

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            +  S   +L+IVND+LD SKIE+GK+ L   P    +    A+      A  K I    
Sbjct: 359 VVQESSQNLLNIVNDILDFSKIEAGKVELEEIPFDPIDKWEMAVETYAAKALHKGIDFAV 418

Query: 689 SFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIIST----THTSNEEVILRVRD 743
                +P RIL D   + Q+ +N+++NAI FT  GG++ +          N  V   V D
Sbjct: 419 YVDPALPGRILGDPTRISQVLVNLVNNAIKFTERGGEVSVFCQKMGELEGNVFVKFVVSD 478

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TG+G+   + EK    F Q  ++   +  GTGLGL ++  +V A  GK  + S P KG+ 
Sbjct: 479 TGIGIALDQQEKIFDLFTQADSTTSRKFGGTGLGLSISSKLVAAMGGKLAVESEPGKGSS 538

Query: 804 IEIIFPL-YDTSHPH 817
                PL  D   P 
Sbjct: 539 FFFTLPLKKDPEAPE 553


>gi|239907909|ref|YP_002954650.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239797775|dbj|BAH76764.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 1126

 Score =  298 bits (762), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 84/370 (22%), Positives = 162/370 (43%), Gaps = 15/370 (4%)

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR--KPFTVFLEQNT 505
           +    +  +I + + +    +  +G +L  + A  ++ GY  E+ ++  +     ++   
Sbjct: 329 KKAEEKYKAIADYSYEWEYWVGSDGNLLWVSPACERVTGYRPEEFIQNQQLIYEIVQPED 388

Query: 506 PSVMNHYLTEIL-SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH--DIS 562
            S +  +   I    + +  +E        +   +        L   S     +   DI+
Sbjct: 389 LSKLETHCKNIFSENNQQCDIEFKIFNRANKLVWIHHHCQQIILSDGSSLGRFVRNLDIT 448

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E K  +  L  ++  A + ++ KS+FLA +SHEIRTPL  IIG + ++ +          
Sbjct: 449 ERKSFEFSLIQSRTQALESANLKSEFLANMSHEIRTPLNGIIGMTGLLLDSNLTY----E 504

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
              +A  I  SG+ +LD+++D+LD SKIE+GK+       +L   + +    + L A  +
Sbjct: 505 QTRFAEAIRSSGDSLLDLIDDILDFSKIEAGKIEFESFDFNLINLLDDFDDTMALRAYGR 564

Query: 683 RILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----V 737
            + +      N+P  +  D   ++QI  N+  NAI FT +G +I +  T   +      +
Sbjct: 565 GLELLCKVEPNVPKWLRGDPGRLRQILTNLTGNAIKFTHAG-EITLRVTLVKDGTTNCIL 623

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
              V DTG+G++          F Q   S   +  GTGLGL ++K + +   G+  + S 
Sbjct: 624 RFSVCDTGIGISPVNTRNLFNKFTQADTSTTRKYGGTGLGLAISKQLTELMGGEIGVTSQ 683

Query: 798 PAKGTLIEII 807
            ++G+     
Sbjct: 684 ESQGSEFWFT 693


>gi|254505648|ref|ZP_05117794.1| sensor protein GacS [Vibrio parahaemolyticus 16]
 gi|219551301|gb|EED28280.1| sensor protein GacS [Vibrio parahaemolyticus 16]
          Length = 870

 Score =  298 bits (762), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 90/275 (32%), Positives = 150/275 (54%), Gaps = 12/275 (4%)

Query: 542 RIIIKKLPFSSCYSLTMHD----ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
            +    +  +  ++   H+    I+  K  + KL  AK+ AE  +  KS FLA +SHEIR
Sbjct: 333 HVDQIPIDGNDEFTRFAHELNDTIARQKAYQTKLVEAKEHAEAANQAKSVFLANMSHEIR 392

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TPL  IIG +E++ + +     N    E  N ID S + +L ++ND+LD+SKIESG + L
Sbjct: 393 TPLNGIIGMTEILSDSQL----NGSQKEILNDIDASSHALLVLINDILDLSKIESGNLVL 448

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA--DLRSVKQIALNILSNA 715
                +L E + + +++V   A ++ + +   FA+++P + A  D   VKQI +N+LSNA
Sbjct: 449 SPHTANLREIIFDTMNMVNAQALKQEVTLEVEFADDVP-VYAEMDEFRVKQILMNLLSNA 507

Query: 716 IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           I F+ + G +++  +  +   + + V DTGVG+   +L    KPF Q   +   R  GTG
Sbjct: 508 IKFS-ANGSVLVRHSVDTQHRLNIEVLDTGVGIAADKLSDIFKPFTQEDGTITRRFGGTG 566

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           LGL + + +V+   G+  + S   +G+   +I PL
Sbjct: 567 LGLAICRQLVELMRGELVVESNVGEGSRFTVILPL 601


>gi|332288845|ref|YP_004419697.1| aerobic respiration control sensor protein ArcB [Gallibacterium
           anatis UMN179]
 gi|330431741|gb|AEC16800.1| aerobic respiration control sensor protein ArcB [Gallibacterium
           anatis UMN179]
          Length = 753

 Score =  298 bits (762), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 85/379 (22%), Positives = 165/379 (43%), Gaps = 16/379 (4%)

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
           +E E       +  ++ +   L S ++A+ D +      G +L  NRA+  L G    ++
Sbjct: 101 LEQEITAKNKAQIALQQKADFLRSFIDASPDLVFSRAENGQLLECNRAMELLTGKSETEL 160

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPF 550
                      +    +      +L  +   T E+       +     +R +    ++  
Sbjct: 161 KTLEIEQTFSSDIAKYVRATDRAVLDNNYGMTYEQWFKYPNGKLACFEIRKVPYYDRINK 220

Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
             C      DI+E K+        ++  EK S  KS  +A +SHE+RTPL  IIG S ++
Sbjct: 221 QHCLLGFGRDITEHKR-------YQETIEKASRDKSTLMATISHELRTPLNGIIGLSRIL 273

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
            + +     N     Y + I+ S   +  I +D++D+ K+++ ++ L+ +   +   +S+
Sbjct: 274 LDSQL----NEEQRNYLHTINVSAVSLGHIFSDIIDLEKLDTRRIQLYKKETDVMRLLSD 329

Query: 671 AISLVQLYANEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIIST 729
             +      N+K +  +  +  N+P +L  D   V QI  N+++NA+ FTPSGG + +  
Sbjct: 330 IDNFATFMTNQKNLSFKLEYDQNLPNLLLLDYARVSQILWNLINNAVKFTPSGG-LTLRF 388

Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
           +          + DTG+G+   EL+K    + Q+  +   +  G+G+GL ++K +     
Sbjct: 389 SRLDQNTYSFALTDTGIGIPQSELKKIFAMYYQVRTA-NQKALGSGIGLSISKRIAKLMN 447

Query: 790 GKFYIFSTPAKGTLIEIIF 808
           G   + S   KG+     F
Sbjct: 448 GDLTVVSELGKGSTFTFTF 466


>gi|229179925|ref|ZP_04307271.1| hypothetical protein bcere0005_32720 [Bacillus cereus 172560W]
 gi|228603606|gb|EEK61081.1| hypothetical protein bcere0005_32720 [Bacillus cereus 172560W]
          Length = 510

 Score =  298 bits (762), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 95/523 (18%), Positives = 193/523 (36%), Gaps = 39/523 (7%)

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDD 359
            + +                +     +  P     +   G + + NPS   +  Y S++ 
Sbjct: 13  RHPNISRRLRNHIQDRSLTEMYASLFEHNPDSIISLNLEGVILHINPSAERILGYTSLE- 71

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
           +E     S L         +  + V+    +         + +I       L +      
Sbjct: 72  LEQKNITSIL-------GAHISEQVLQNIKNTEADNQQEYILSIYHKNGFLLDVVTKLVP 124

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
              Q         ++P +   RI +  ++    +L +++ +    +   + EG  L  N 
Sbjct: 125 IFVQNRLTGVYAIMKPLEKSERI-ENMLKESEKRLRTLVNSMPAFVIFKDHEGRWLEAND 183

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMN----HYLTEILSLDLRQTLEKITLGSTKE 535
                F +       K  +  ++ N            + E+     RQ L        ++
Sbjct: 184 YALSCFNFHHVPYHGKKDSELIQYNEAYREAFLHCEEVDELAWQ-QRQILHGEEFIIHRD 242

Query: 536 EKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
           +  L L I    L           +   D++E K+ +  L  ++K+A           A 
Sbjct: 243 DFDLILSISKVPLYHPDGSRKGLIVMGRDVTELKETEKLLRKSEKLAVV-----GQLTAG 297

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           ++HEIR PLT++ GF  ++      P  N     Y + +    + +  I +  + +SK +
Sbjct: 298 IAHEIRNPLTSLKGFLTLLL-----PEINEEQKWYIDVMLSEISQMESITSQFMAMSKPQ 352

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
                L  +  ++   + E ++ +        + I     + +  I  D   +KQ+ +NI
Sbjct: 353 ----VLSIQTCNIQTLIEEVVTFILPTTIMHSVHIIMDHFDYVYDIQCDGNQLKQVFINI 408

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           L NAI    +GG I I T    +  +++R+ D G G+    + +  +PF        ++ 
Sbjct: 409 LKNAIEAMQNGGNIFIQTKPLEDNFILIRIIDEGCGIPEDRISRLGEPFY------SLKE 462

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           +GTGLGL +   +++ + GK +I S   KGT+++I  PL  + 
Sbjct: 463 KGTGLGLMMCYKIIEEHHGKLHISSELNKGTIVDIELPLSSSH 505


>gi|160936694|ref|ZP_02084061.1| hypothetical protein CLOBOL_01585 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440485|gb|EDP18230.1| hypothetical protein CLOBOL_01585 [Clostridium bolteae ATCC
           BAA-613]
          Length = 819

 Score =  298 bits (762), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 105/501 (20%), Positives = 186/501 (37%), Gaps = 42/501 (8%)

Query: 340 NLFYANPSFLLLTKYKSVD--DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS-----DRT 392
            L + N  +  L  Y   +   +              L+ ++    + L        +  
Sbjct: 36  TLVWCNDYYYELIGYSREEYEALYHNKPA-HYYMNDDLNIHDEKLWMQLSARVMETLESG 94

Query: 393 CIAASARLHTIQWNRENSL---AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449
             + +      + +  N      +    +              +  +  D  +   K+E 
Sbjct: 95  EKSYNLVTRMRRKHNGNHHDYMWVRLNAYLTDEYVDGYQVSYSVMTDITD--VMDMKLEQ 152

Query: 450 EVMQLCSILEATSDGI----AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            V       ++    +       N +  +L  N      FG    D +            
Sbjct: 153 SVTY-----DSLPGFVSKFRVNRNLDFKLLEANDRFFDFFGKDSMDGMDNALFRENIIRN 207

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII-IKKLPFSSCYSLTMHDIS-- 562
             V   +    ++              +  +  L +    I        Y     DI+  
Sbjct: 208 MPVFLEH-KNAVTNGNSVHFTVQMKNRSGNDAWLQINASCIGYQEGDPVYLAIYIDITNE 266

Query: 563 -EWKQEKN-------KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
            E +Q +        +L  A + AE+ +  KSDFL+R+SH+IRTPL A++G  ++ +   
Sbjct: 267 TELRQMQQKLEAQAKELRSALETAEEANRAKSDFLSRMSHDIRTPLNAVLGMKDIAEAHL 326

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
             P    +  +    I  SG  +L ++ND+LD+SKIESG+M L  + +SL E +   +++
Sbjct: 327 DDP---AKVKDCLRKIGLSGQHLLSLINDVLDMSKIESGEMVLREDSMSLPEVLENVVAI 383

Query: 675 VQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIIST---- 729
           +Q    EK         + +  + L+D   ++QI +NILSNA  FTP  G + +      
Sbjct: 384 MQPQFGEKEQHFSIRLRSVVHEQFLSDALRMRQIFINILSNAYKFTPVNGTVSMDVCEKQ 443

Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
                      + DTG+GM    L +    F +  +S+  + EGTGLG+ + K  VD   
Sbjct: 444 AVDGTALFRFSITDTGIGMKPEYLAQIFTAFSRERDSRVDKTEGTGLGMAITKRFVDMMG 503

Query: 790 GKFYIFSTPAKGTLIEIIFPL 810
           G   + S   KGT   +  PL
Sbjct: 504 GTIEVTSELGKGTCFRVELPL 524


>gi|110633234|ref|YP_673442.1| multi-sensor signal transduction histidine kinase [Mesorhizobium
           sp. BNC1]
 gi|110284218|gb|ABG62277.1| multi-sensor signal transduction histidine kinase [Chelativorans
           sp. BNC1]
          Length = 548

 Score =  298 bits (762), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 112/504 (22%), Positives = 201/504 (39%), Gaps = 28/504 (5%)

Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDI----EIAGGLSTLLDAPKLSDNNAI 381
           V   P    + +         +  L     ++  +      A     ++ A  + +   +
Sbjct: 30  VGLLPPLVLITTAKRRIA--EALALSLGAVTLGALIARSGGAISPLVVMSAGFVVEAAWL 87

Query: 382 KPVMLYRSDRTCIAASAR-----LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
                     +  AA A      L  +      S     +P   A       P  G    
Sbjct: 88  GRTRRAIVFGSSAAAVAIGLGVALTALSGTDLPSAWQWLVPLVYAATLLVRWPFTGPAEG 147

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
            V +      +E          E     +  +   G ++  +  + ++ G   E +L   
Sbjct: 148 QVSSETPGLALE----------EMIGAAVLRLQVSGDVVHASPKLEEVLGVAPEMLLGTG 197

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII-----IKKLPFS 551
           F   +           L ++      +TL             +          +  L  +
Sbjct: 198 FFDRIHVTDRVAWLSTLGDLREGAGPRTLRLRLRVPAAPGLPIQAAYRSFIFDVAALQDA 257

Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
           +     + +       +  L+ A+ +AE     + + LA VSHE+RTPL AI+GF++++ 
Sbjct: 258 AGVVALLREDVSTAAAEEALAEARHVAEAACRSRDEMLASVSHELRTPLNAIVGFADLLA 317

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
           N+ FG   N +  EY   I  +G  +L +VN +LD+SK++SG   +  +P   ++AV   
Sbjct: 318 NEMFGKFANDKQREYVEVIREAGTHLLSVVNAILDVSKVQSGAYGVEAKPFHFEDAVRLC 377

Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
           +++    A  K + ++   A +I  +  D  +V+Q+ +N+LSNA+ FTPSG ++ + T H
Sbjct: 378 MAMTTHQAQAKSVELKADIAGDIGTVRCDKNAVQQVLINLLSNAVKFTPSG-EVKV-TAH 435

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
            S + +   V DTG+G++  +LE    PF Q+ N    + EGTGLGL L K +V    G 
Sbjct: 436 RSGDRLEFTVSDTGIGISAEDLELVGTPFMQVRNDYTRKCEGTGLGLALVKGLVRLQGGG 495

Query: 792 FYIFSTPAKGTLIEIIFPLYDTSH 815
             I S P +GT + +  P      
Sbjct: 496 LSIESAPGRGTRVHVSLPAGPADA 519


>gi|26246404|ref|NP_752443.1| phosphate regulon sensor protein [Escherichia coli CFT073]
 gi|191166728|ref|ZP_03028555.1| phosphate regulon sensor protein PhoR [Escherichia coli B7A]
 gi|193068725|ref|ZP_03049686.1| phosphate regulon sensor protein PhoR [Escherichia coli E110019]
 gi|194432575|ref|ZP_03064861.1| phosphate regulon sensor protein PhoR [Shigella dysenteriae 1012]
 gi|218557309|ref|YP_002390222.1| phosphate regulon sensor protein [Escherichia coli S88]
 gi|218688262|ref|YP_002396474.1| phosphate regulon sensor protein [Escherichia coli ED1a]
 gi|218693860|ref|YP_002401527.1| phosphate regulon sensor protein [Escherichia coli 55989]
 gi|218698696|ref|YP_002406325.1| phosphate regulon sensor protein [Escherichia coli IAI39]
 gi|227884594|ref|ZP_04002399.1| PAS/PAC sensor signal transduction histidine kinase [Escherichia
           coli 83972]
 gi|237707607|ref|ZP_04538088.1| phosphate regulon sensor protein phoR [Escherichia sp. 3_2_53FAA]
 gi|256020367|ref|ZP_05434232.1| phosphate regulon sensor protein [Shigella sp. D9]
 gi|293408544|ref|ZP_06652383.1| phoR [Escherichia coli B354]
 gi|293418466|ref|ZP_06660901.1| two-component system [Escherichia coli B088]
 gi|300988100|ref|ZP_07178537.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 45-1]
 gi|301025439|ref|ZP_07188989.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 69-1]
 gi|301049598|ref|ZP_07196550.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 185-1]
 gi|307312225|ref|ZP_07591861.1| PAS/PAC sensor signal transduction histidine kinase [Escherichia
           coli W]
 gi|309794877|ref|ZP_07689298.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 145-7]
 gi|331645571|ref|ZP_08346675.1| phosphate regulon sensor kinase PhoR [Escherichia coli M605]
 gi|331651328|ref|ZP_08352353.1| phosphate regulon sensor kinase PhoR [Escherichia coli M718]
 gi|332281545|ref|ZP_08393958.1| phosphate regulon sensor protein phoR [Shigella sp. D9]
 gi|26106802|gb|AAN78987.1|AE016756_170 Phosphate regulon sensor protein phoR [Escherichia coli CFT073]
 gi|190903239|gb|EDV62961.1| phosphate regulon sensor protein PhoR [Escherichia coli B7A]
 gi|192958088|gb|EDV88530.1| phosphate regulon sensor protein PhoR [Escherichia coli E110019]
 gi|194419136|gb|EDX35219.1| phosphate regulon sensor protein PhoR [Shigella dysenteriae 1012]
 gi|218350592|emb|CAU96282.1| sensory histidine kinase in two-component regulatory system with
           PhoB [Escherichia coli 55989]
 gi|218364078|emb|CAR01743.1| sensory histidine kinase in two-component regulatory system with
           PhoB [Escherichia coli S88]
 gi|218368682|emb|CAR16422.1| sensory histidine kinase in two-component regulatory system with
           PhoB [Escherichia coli IAI39]
 gi|218425826|emb|CAR06632.1| sensory histidine kinase in two-component regulatory system with
           PhoB [Escherichia coli ED1a]
 gi|222032195|emb|CAP74934.1| Phosphate regulon sensor protein phoR [Escherichia coli LF82]
 gi|226898817|gb|EEH85076.1| phosphate regulon sensor protein phoR [Escherichia sp. 3_2_53FAA]
 gi|227838680|gb|EEJ49146.1| PAS/PAC sensor signal transduction histidine kinase [Escherichia
           coli 83972]
 gi|291324994|gb|EFE64409.1| two-component system [Escherichia coli B088]
 gi|291471722|gb|EFF14205.1| phoR [Escherichia coli B354]
 gi|294493061|gb|ADE91817.1| phosphate regulon sensor protein PhoR [Escherichia coli IHE3034]
 gi|300298643|gb|EFJ55028.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 185-1]
 gi|300396024|gb|EFJ79562.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 69-1]
 gi|300407514|gb|EFJ91052.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 45-1]
 gi|306907727|gb|EFN38229.1| PAS/PAC sensor signal transduction histidine kinase [Escherichia
           coli W]
 gi|307552304|gb|ADN45079.1| phosphate regulon sensor protein PhoR [Escherichia coli ABU 83972]
 gi|307628131|gb|ADN72435.1| phosphate regulon sensor protein [Escherichia coli UM146]
 gi|308121530|gb|EFO58792.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 145-7]
 gi|312944977|gb|ADR25804.1| phosphate regulon sensor protein [Escherichia coli O83:H1 str. NRG
           857C]
 gi|315059677|gb|ADT74004.1| sensory histidine kinase in two-component regulatory system with
           PhoB [Escherichia coli W]
 gi|315289886|gb|EFU49276.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 110-3]
 gi|315294170|gb|EFU53521.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 153-1]
 gi|315299631|gb|EFU58879.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 16-3]
 gi|320197164|gb|EFW71781.1| phosphate regulon sensor protein [Escherichia coli WV_060327]
 gi|323170480|gb|EFZ56130.1| phosphate regulon sensor kinase PhoR [Escherichia coli LT-68]
 gi|323379757|gb|ADX52025.1| PAS/PAC sensor signal transduction histidine kinase [Escherichia
           coli KO11]
 gi|323958592|gb|EGB54295.1| phosphate regulon sensor kinase PhoR [Escherichia coli H263]
 gi|324010108|gb|EGB79327.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 57-2]
 gi|324116883|gb|EGC10796.1| phosphate regulon sensor kinase PhoR [Escherichia coli E1167]
 gi|330910193|gb|EGH38703.1| phosphate regulon sensor protein PhoR (SphS) [Escherichia coli
           AA86]
 gi|331045733|gb|EGI17859.1| phosphate regulon sensor kinase PhoR [Escherichia coli M605]
 gi|331051069|gb|EGI23121.1| phosphate regulon sensor kinase PhoR [Escherichia coli M718]
 gi|332085719|gb|EGI90883.1| phosphate regulon sensor kinase PhoR [Shigella dysenteriae 155-74]
 gi|332103897|gb|EGJ07243.1| phosphate regulon sensor protein phoR [Shigella sp. D9]
          Length = 431

 Score =  298 bits (762), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 73/427 (17%), Positives = 151/427 (35%), Gaps = 37/427 (8%)

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             +L       I     L  + W     L +         +        G+    +  + 
Sbjct: 33  WFLLASVTGLLIWHFWNLLRLSW----WLWVDRSMTPPPGRGSWEPLLYGLHQMQLRNKK 88

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            +R++   + +  S  E+  D + +   EG I   N    ++ G    +   +     L 
Sbjct: 89  RRRELGNLIKRFRSGAESLPDAVVLTTEEGGIFWCNGLAQQILGLRWPEDNGQNILNLLR 148

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
               +               +   +         + L +R++           +   D++
Sbjct: 149 YPEFTQYL----------KTRDFSRPLNLVLNTGRHLEIRVMPYTHKQ---LLMVARDVT 195

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  Q +                + +F A VSHE+RTPLT + G+ E++  Q        +
Sbjct: 196 QMHQLEG--------------ARRNFFANVSHELRTPLTVLQGYLEMMDEQPLEGAVREK 241

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                + +      +  +V  LL +SKIE+   +L  E V +   +       Q  + +K
Sbjct: 242 A---LHTMREQTQRMEGLVKQLLTLSKIEAAPTHLLNEKVDVPMMLRVVEREAQTLSQKK 298

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           +        N + ++  +   ++    N++ NA++ TP G  I +      +      V 
Sbjct: 299 Q-TFTFEIDNGL-KVSGNEDQLRSAISNLVYNAVNHTPEGTHITVRWQRVPHG-AEFSVE 355

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G G+    + +  + F ++  ++  +  G+GLGL + K  V+ +  +  I ST  KGT
Sbjct: 356 DNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHAVNHHESRLNIESTVGKGT 415

Query: 803 LIEIIFP 809
               + P
Sbjct: 416 RFSFVIP 422


>gi|315127664|ref|YP_004069667.1| sensory box sensor histidine kinase/response regulator
           [Pseudoalteromonas sp. SM9913]
 gi|315016178|gb|ADT69516.1| sensory box sensor histidine kinase/response regulator
           [Pseudoalteromonas sp. SM9913]
          Length = 1256

 Score =  298 bits (762), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 101/505 (20%), Positives = 195/505 (38%), Gaps = 38/505 (7%)

Query: 313 AYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
              +    L    ++  P    F  + G     N +F L       + +           
Sbjct: 409 QAKERHLALLNTVLNSVPDFIYFKNTEGIFLGCNKAFELFIGKTQGELLGQQIHN----I 464

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
           + +    + ++  +L    +          T Q                 N+  + +   
Sbjct: 465 SNEYEQISLLEYQVLQHKMQIQQRIDVAERTYQ----------LTIAPFYNEQQQLLGTM 514

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
           G+  +  + +     ++       S +E  ++G+ +++ E  IL  N+A  KLF    + 
Sbjct: 515 GVGRDITEQQHTLYALKESESIFRSAIEFAANGVFLLSLEYAILQINKAARKLFS-KHDK 573

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
           +   PF           +   L ++L+   R     +TL  T+    L L + +     S
Sbjct: 574 LTDTPFYALFNNTQWQELEALLQQLLNNKKRVF--HLTLAHTQLNAWLQLSMSLIWNENS 631

Query: 552 SC--YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
               Y + + D++E  +        K  AE+ +  KS F+A +SHEIRTPL A++G  ++
Sbjct: 632 QPLYYVIHIQDVTELTKA-------KDDAERATLAKSRFIANLSHEIRTPLNAVLGLLDM 684

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           +           R I+  +    + N +L ++N +LD +++ES +  L   P+ L + + 
Sbjct: 685 LAEHGL----TQRQIQQTSQAKYAANNLLQMLNSMLDFARVESKEATLQLAPLCLVDLID 740

Query: 670 EAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
              SL+      K+I ++    + I P ++ D   ++Q+  N+L+NA+ FT  G  + + 
Sbjct: 741 TCESLILPLCQAKQIQLKIDIDSQISPFLVGDTIRLQQVLGNLLTNAVKFTNKGS-VTLK 799

Query: 729 TTHTS-----NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
            T         + +  +V DTGVG+   +  +    F Q   S     +G GLGL + K 
Sbjct: 800 MTLQPSQSHIEQRICFQVIDTGVGIAQADQRRLFDAFTQGDESSTRLHQGVGLGLAIVKH 859

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIF 808
            V    G+  + S    G       
Sbjct: 860 SVALMGGEIALSSDKGHGCHFYFTL 884



 Score = 45.0 bits (105), Expect = 0.056,   Method: Composition-based stats.
 Identities = 23/164 (14%), Positives = 45/164 (27%), Gaps = 10/164 (6%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144
           F +  +  G     ++     IG    +++G ++ ++S+            L  +     
Sbjct: 428 FIYFKNTEGIFLGCNKAFELFIGKTQGELLGQQIHNISNEYEQISLLEYQVLQHKMQIQQ 487

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
                             L   P Y+  ++  G  G G               K  +  F
Sbjct: 488 RIDV--------AERTYQLTIAPFYNEQQQLLGTMGVG--RDITEQQHTLYALKESESIF 537

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA 248
               E       +   +Y I         L  K+   + T +YA
Sbjct: 538 RSAIEFAANGVFLLSLEYAILQINKAARKLFSKHDKLTDTPFYA 581


>gi|261854763|ref|YP_003262046.1| integral membrane sensor hybrid histidine kinase [Halothiobacillus
           neapolitanus c2]
 gi|261835232|gb|ACX94999.1| integral membrane sensor hybrid histidine kinase [Halothiobacillus
           neapolitanus c2]
          Length = 858

 Score =  298 bits (762), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 85/299 (28%), Positives = 138/299 (46%), Gaps = 4/299 (1%)

Query: 514 TEILSLDLRQTLEKITLGSTKEE--KLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571
            ++   D  Q  +    G    E  +              +  +  M    E +Q     
Sbjct: 265 EQMAVFDQPQMQQLARRGDEPGELARSFQSMAHEVADREQNLNTAVMQRTEELEQALKIA 324

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
             A+K AE  +  KS F+A +SHE+RTPL AIIG+SE++  +     GN +Y      I 
Sbjct: 325 GEARKEAEDANQTKSQFVANMSHELRTPLNAIIGYSEILLEESEDD-GNTQYAPDLERIL 383

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
            SG  +L +VND+LDIS+IE+GKM L+ E   +   +   I   +   ++ +  +     
Sbjct: 384 NSGKHLLALVNDILDISRIEAGKMELYLESFPICREIQTVIDTARPVIDKNQNSLVFECD 443

Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751
           +++  +  DL   +QI LN++SNA  FT  G  + +S      +   + V DTG+GM   
Sbjct: 444 DSLGHMRGDLTKFRQILLNLISNAAKFTQVG-TLTLSVRREDTDHFTIAVADTGIGMNEE 502

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           +L +  + F Q   S   +  G+GLGL +++       G     STP  G++  +  PL
Sbjct: 503 QLGRLFQVFSQADASTTRKYGGSGLGLSISRHFARMMGGDITATSTPGSGSVFTVSLPL 561


>gi|284036959|ref|YP_003386889.1| histidine kinase [Spirosoma linguale DSM 74]
 gi|283816252|gb|ADB38090.1| histidine kinase [Spirosoma linguale DSM 74]
          Length = 906

 Score =  298 bits (762), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 82/328 (25%), Positives = 153/328 (46%), Gaps = 8/328 (2%)

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
           +   ++             +  Y  + L+  +     +I + S   E+ LS+  +I  L 
Sbjct: 582 DRYTQRNQLEAGSAYADPRLVAYAEKWLAGAIGTASARILVSSVANEEPLSVDEVIHILK 641

Query: 550 FSSCYSLTMHDIS----EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
            S         ++    E +Q    LS A +  ++    K DF++ V+HEIRTPLT+I  
Sbjct: 642 ASQELMTVNKKLTRKSAELQQMTQHLSLANERLKQSDEQKDDFVSTVTHEIRTPLTSIRA 701

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
            SE++ +Q    +      E+ + + R    +  ++N +LD+ + +SG+ +L  E +S+ 
Sbjct: 702 LSEILHDQAD--MDESMRQEFLSRVIRETERLSRLINQVLDLERYDSGRYHLSTERISMV 759

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG-GQ 724
           + V+EA+  V   A +K++ +        P +  D   + Q+ +N+LSNAI F+P+G G 
Sbjct: 760 DLVAEAVENVAQLARDKQVTLEICPTQAQPVVDGDRDRLMQVLINLLSNAIKFSPAGTGH 819

Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
           + +  T      V L VRD G+G+     +   + F Q  N    + +G+GLGL + K +
Sbjct: 820 VTVCLTIRDE-RVNLTVRDNGIGIEPDVQQLIFEKFYQATNQTLRKPKGSGLGLAITKKI 878

Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPLYD 812
           +  + G+  + S P +G       P  +
Sbjct: 879 IALHNGQITVSSVPGEGAEFTCSLPACE 906


>gi|313884490|ref|ZP_07818251.1| putative alkaline phosphatase synthesis sensor protein PhoR
           [Eremococcus coleocola ACS-139-V-Col8]
 gi|312620274|gb|EFR31702.1| putative alkaline phosphatase synthesis sensor protein PhoR
           [Eremococcus coleocola ACS-139-V-Col8]
          Length = 575

 Score =  298 bits (762), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 73/378 (19%), Positives = 160/378 (42%), Gaps = 27/378 (7%)

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
               R   R +E    +L  +L   + G+ +I+    I   N    KL       I+  P
Sbjct: 219 VTQLRHQYRNLEDSERRLSILLNHLNLGVLLIDDRDRIELNNPESLKLLDLSAP-IVGLP 277

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY-- 554
           F   +       +   +  +   +  +  E        + +++ + II  +   S     
Sbjct: 278 FETIIRSVR---LVELIRAVQKDEQAKQEEIEFYY--PDYRVIDVNIIPYQRERSGHIAH 332

Query: 555 --SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
              + ++D++  ++ +                +++F+A  SHE+RTP+TAI GF+E + +
Sbjct: 333 SSLVLLYDVTRNRKLET--------------IRTEFVANASHELRTPVTAIKGFAETLLD 378

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
                       ++   I +  N +  I++D+L++S++E        + + L       +
Sbjct: 379 GALS--DPDMTKQFVEIIAKESNRLEVIIHDILELSRVEKNSEPWETQLLDLVATGKAVL 436

Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
            L +  + +K I +  S   +   I ++   ++QI +N++ NAI+++  GG+I+++    
Sbjct: 437 QLFKQASQQKNIRMNFSSNIDQLMIDSNKHRLEQIMINLIDNAINYSDFGGEILLAVEKV 496

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
               + ++V D G+G+   +  +  + F ++   +     GTGLGL +   +V    G  
Sbjct: 497 KQGAL-IQVSDKGIGIPEADQSRIFERFYRVDKDRSRNSGGTGLGLSIVNNLVRIMEGNI 555

Query: 793 YIFSTPAKGTLIEIIFPL 810
            + S   +GT  +I  P+
Sbjct: 556 QVTSVEGQGTTFKIFIPI 573


>gi|282897495|ref|ZP_06305496.1| Multi-sensor Signal Transduction Histidine Kinase [Raphidiopsis
           brookii D9]
 gi|281197590|gb|EFA72485.1| Multi-sensor Signal Transduction Histidine Kinase [Raphidiopsis
           brookii D9]
          Length = 643

 Score =  298 bits (762), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 79/261 (30%), Positives = 132/261 (50%), Gaps = 12/261 (4%)

Query: 559 HDISEWKQEKNKLSHAKKIAEKE--------SSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
             +++ KQ   +    + +A +E        S  +++FLA +SHE+ TPLT +IG S  +
Sbjct: 379 RKLTQEKQTLEQRVIERTMALREALLAAEAASRIRNEFLATISHELLTPLTYVIGMSSTL 438

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
                G L  PR  EY   I  SG  +L+++ND+LD+S+I++GK  L+    SL      
Sbjct: 439 LRWPLGELT-PRQREYLQTIHDSGERLLEMINDILDLSQIQAGKTVLNICEFSLTRLAEN 497

Query: 671 AISLVQLYANEKRILIRTSFA--NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
            +  +   +   ++ ++          +  AD   ++QI  N+L+NAI FTP GG + + 
Sbjct: 498 IVDSLLEKSTNAKVTLKLDVQVNPRHDQFSADPGRIEQIIWNLLTNAIKFTPQGGSVTLR 557

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                N  VI +V DTG+G+   +L    + F Q+  S     EGTG+GL L K +V+ +
Sbjct: 558 FWVEDN-TVIFQVEDTGIGIPEEKLPLVFEKFQQVDASYHRPYEGTGIGLALTKQLVELH 616

Query: 789 MGKFYIFSTPAKGTLIEIIFP 809
            G+  + ST   G++  +  P
Sbjct: 617 RGRIEVESTVGVGSVFTVWIP 637


>gi|149909590|ref|ZP_01898243.1| hypothetical protein PE36_12412 [Moritella sp. PE36]
 gi|149807294|gb|EDM67247.1| hypothetical protein PE36_12412 [Moritella sp. PE36]
          Length = 903

 Score =  298 bits (762), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 79/252 (31%), Positives = 131/252 (51%), Gaps = 8/252 (3%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I E    + ++  AK+ AE+ +  KS FLA +SHEIRTPL  +IG S ++ N +  P   
Sbjct: 358 IEERHINEKQIIQAKESAEQANVAKSSFLANMSHEIRTPLNGVIGMSNILSNTKLTP--- 414

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
               ++   I+ S   +L ++ND+LD SKIESG + +      L E + + ++++   A 
Sbjct: 415 -SQQDHLAIIENSSQTLLILINDILDFSKIESGHLAITNHRCDLREVIYDTVAIITPSAA 473

Query: 681 EKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNE--E 736
            K +    + A  +P   L D   ++Q+ +N+LSNA+ FT SG   + +S+    N   E
Sbjct: 474 AKNLDFSVNIAPELPNEFLLDEHRLRQVLMNLLSNAVKFTDSGQVSLTLSSKVIENSRSE 533

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           +   V DTG G+   + +K  +PF Q   S   +  GTGLGL ++  +V+   G+  + S
Sbjct: 534 LYFSVADTGTGIEEDKQQKIFEPFTQEDGSITRQFGGTGLGLAISTQLVELMGGEIGVDS 593

Query: 797 TPAKGTLIEIIF 808
           T  +G+      
Sbjct: 594 TKGQGSNFYFTI 605


>gi|78221237|ref|YP_382984.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter
           metallireducens GS-15]
 gi|78192492|gb|ABB30259.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter
           metallireducens GS-15]
          Length = 763

 Score =  298 bits (762), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 98/441 (22%), Positives = 194/441 (43%), Gaps = 19/441 (4%)

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
            K+   +  + V +  +D       A     +   E    +     E+A    +    N 
Sbjct: 340 RKIESGDLRQRVEVTTADEVGELGEAFNRMARSLEERDRTIRATAHEQAELNRKLQEMNE 399

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
              E+V  R     +++E+ +L +IL   ++GIA+ +REG ++  N A  ++F      +
Sbjct: 400 HLEENVSERTT--ALQMEMGRLEAILTGMAEGIAVTDREGKVILFNPAAQRIFEMVPPRV 457

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
           +               +  Y+  +   D       + +    ++  +SL     +    +
Sbjct: 458 MGHTLEELCAGGEFCALADYVRTMKETDDLTPRRDVEMSMKGKKLTISLSPFCDQGGALA 517

Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
              +++ D++  +                   K++F++ VSHE++TPLT+I G  + I +
Sbjct: 518 GVVMSVRDVTGEEDV--------------DRVKTEFISTVSHELKTPLTSIKGSLQFIHD 563

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
           +  G  G     E  +   R+ + ++ +VND+LDI++IESG++    EP  +   V+ +I
Sbjct: 564 RGEGFGGM--EGELLSVCLRNTDRLIRLVNDILDIARIESGRLEFVPEPQDVRTLVTHSI 621

Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
             +  YA E  + +      ++P I  D   + Q+  N+LSNAI F+P G ++++ T   
Sbjct: 622 EELAGYALEHDVSVENRCGQDLPPIYGDRDRLVQVLTNLLSNAIKFSPRGERVVV-TAER 680

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
           ++  V + V D G  +   +  K  K F  + NS + +  GTGLGL + K +V+ + G+ 
Sbjct: 681 TSNYVAISVGDRGREILWSDRGKLFKKFQLLDNSDRRQHGGTGLGLAICKEIVEHHHGRI 740

Query: 793 YIFSTPAKGTLIEIIFPLYDT 813
           +       G +     P+Y+ 
Sbjct: 741 FYNEGTGGGNVFTFTVPVYEE 761



 Score = 41.9 bits (97), Expect = 0.45,   Method: Composition-based stats.
 Identities = 26/281 (9%), Positives = 60/281 (21%), Gaps = 13/281 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            D  G +   +    +       +++G  L ++               +K  +     T 
Sbjct: 433 TDREGKVILFNPAAQRIFEMVPPRVMGHTLEELCAGGEFCALADYVRTMKETD---DLTP 489

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
              +E +     + ++  P   +    +G     +V   R       + +   +  S + 
Sbjct: 490 RRDVEMSMKGKKLTISLSPFCDQGGALAG-----VVMSVRDVTGEEDVDRVKTEFISTVS 544

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
              K   +  K        +              L        D L      +L      
Sbjct: 545 HELKTPLTSIKGSLQFIHDR----GEGFGGMEGELLSVCLRNTDRLIRLVNDILDIARIE 600

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
               E        +         L   + E    + +R    L   + + + L     + 
Sbjct: 601 SGRLEFVPEPQDVRTLVTHSIEELAGYALEHDVSVENRCGQDLPPIYGDRDRLVQVLTNL 660

Query: 329 CPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
                 F      +                D          
Sbjct: 661 LSNAIKFSPRGERVVVTAERTSNYVAISVGDRGREILWSDR 701


>gi|283850786|ref|ZP_06368072.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283573709|gb|EFC21683.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 661

 Score =  298 bits (762), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 97/504 (19%), Positives = 191/504 (37%), Gaps = 36/504 (7%)

Query: 323 PETVDKCPIPFF-VYSHGNLFYANPSFLLLT--KYKSVDDIEIAGGLSTLLDAPKLSDNN 379
            + +   P+    + + G + + N   L       + ++          L   P +    
Sbjct: 12  EQILQFAPVSIMTIDASGVITFVNEWHLANFARGKRDLEFFLGK----KLQCLPGIVSAG 67

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
             + +         I   A ++T + +   S            +         I  +   
Sbjct: 68  IAEDIQ-SILSGRTIHLEA-VYTDECSGGQSAYQNIRGIPI-LEDGVVTGGIVIREDVTK 124

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
             +++  +        ++L+AT D I + + +G IL  N   ++  G  V+ ++      
Sbjct: 125 LVLSQHLLSENQAIFKALLDATHDSIILSDLDGYILILNEEAARRRGQTVDALIGASLYR 184

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM- 558
           ++          +L E    +     E+               I +  +   S   + M 
Sbjct: 185 YMAAELAEERRAHLLEAARRNELLCYEERQENR-------YYLISLCPIADDSGRVIYMA 237

Query: 559 ---HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
               DI+  K+ +++L   K++    S  KS FL  ++HE+RTPL  IIG +++      
Sbjct: 238 SYSRDITALKETESQLRKEKELVFSASQAKSQFLGNITHELRTPLNGIIGATQLALQGGS 297

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
           G        E    ++ SG  +L IVN++L+++ I++  +          + ++  +   
Sbjct: 298 G----EDQEELWGIVEDSGKRLLSIVNNVLELADIDAAAIEPVLSVCDARDLLAALVRSY 353

Query: 676 QLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
            + A  K I   T+    IP R++ D+  ++QI  N++ NA+  T +G  I I     S 
Sbjct: 354 SVRAKVKDIRFVTTVDPRIPHRLVGDVFRLRQILSNLVDNALKCTGAGS-IEIRVKKIST 412

Query: 735 EEVILR---------VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
             V            VRDTG+G++     K  + F    +    R  G GLGL +A+ +V
Sbjct: 413 SRVAFAPHYCTLLFMVRDTGIGISKDLQSKIFEDFELAEHYLTKRVSGAGLGLSIARHLV 472

Query: 786 DANMGKFYIFSTPAKGTLIEIIFP 809
           +   G+ ++ S P  G+      P
Sbjct: 473 EMLGGQIWVKSAPKCGSTFYFTVP 496



 Score = 42.7 bits (99), Expect = 0.23,   Method: Composition-based stats.
 Identities = 23/245 (9%), Positives = 52/245 (21%), Gaps = 13/245 (5%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D  GY+  ++EE  +  G     +IG  L                 LL+       +  L
Sbjct: 154 DLDGYILILNEEAARRRGQTVDALIGASLYRYMAAEL--AEERRAHLLEA----ARRNEL 207

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
              E         ++  PI   +        +          +  +  ++  +      +
Sbjct: 208 LCYEERQENRYYLISLCPIADDSGRVIYMASY--SRDITALKETESQLRKEKELVFSASQ 265

Query: 210 IKKGHSSVEKEKYD-----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
            K         +       I                  L          L +    +L  
Sbjct: 266 AKSQFLGNITHELRTPLNGIIGATQLALQGGSGEDQEELWGIVEDSGKRLLSIVNNVLEL 325

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
            +      E   ++   +        +    +K           P +            +
Sbjct: 326 ADIDAAAIEPVLSVCDARDLLAALVRSYSVRAKVKDIRFVTTVDPRIPHRLVGDVFRLRQ 385

Query: 325 TVDKC 329
            +   
Sbjct: 386 ILSNL 390


>gi|2599570|gb|AAB84171.1| hybrid histidine kinase [Dictyostelium discoideum]
          Length = 709

 Score =  298 bits (762), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 90/407 (22%), Positives = 160/407 (39%), Gaps = 31/407 (7%)

Query: 439 DTRINKRKMEIEVMQLCSI----------LEATSDGIAIINREGIILSTNRAVSKLFGYP 488
           D    + ++  E+  L ++          L+     +A+++  G +L  N    +  G  
Sbjct: 42  DHEKTREELIEEINHLRAVSNSNKNARIMLDEMYQFVALLDVNGNLLDVNEPALQGGGMI 101

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEI---LSLDLRQTLEKITLGSTKEEKLLSLRIII 545
              I   PF       T       + E     S       E      +   + +++   +
Sbjct: 102 RSSIQGIPFWDCSRWATSQENIDNVREAVHKASKGEFIRYETEIFCKSAGTEKITIDFSL 161

Query: 546 KKLPFSSCYSLTM----HDISEWKQEKNKLSHAKKIAE-------KESSHKSDFLARVSH 594
             L         +     +I+E +  + ++               +    K+ F A VSH
Sbjct: 162 MPLFNDKGEVSLILPEGRNITEKRLGELEIERKNNELRSLYEKIKELDELKTQFFANVSH 221

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           E+RTPL  I+G ++ +       +      +    + R+   +L IVN+LLDIS++E+GK
Sbjct: 222 ELRTPLALIVGPTDKLLKDENVDIN---VRKDLEIVARNARGLLKIVNNLLDISRLEAGK 278

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714
           MNL++  V+L +      S  ++ A EK +       +       D   ++++  N++SN
Sbjct: 279 MNLNYSMVNLGQTAHLIASCFEILAREKSLDFSIITPSEPMMAAIDADKMQRVITNLISN 338

Query: 715 AIHFTPSGGQ---IIISTTHTSNE-EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           A  FTPSGG    I+     + N+    + V DTG G+ +   E   + F Q+  S   +
Sbjct: 339 AFKFTPSGGAGKCILEKFDLSPNKPGFQIVVSDTGPGIPDNLHEIIFERFRQVDGSSTRK 398

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
             GTGLGL + K  V  + G   I +    G    +  PL      H
Sbjct: 399 HGGTGLGLSIVKEFVTLHGGTVTIHNISTGGAQFTLRLPLTPNMDEH 445



 Score = 37.7 bits (86), Expect = 8.9,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 58/164 (35%), Gaps = 9/164 (5%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCD----VSDILHIDPNNHIGDLLKRQ 140
           F   +D +G L +++E   +  G     + G+   D     +   +ID          + 
Sbjct: 77  FVALLDVNGNLLDVNEPALQGGGMIRSSIQGIPFWDCSRWATSQENIDNVREAVHKASKG 136

Query: 141 NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
                +T ++        + ID + +P+++   E S      I+   R   + R     +
Sbjct: 137 EFIRYETEIFCKSAGTEKITIDFSLMPLFNDKGEVS-----LILPEGRNITEKRLGELEI 191

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244
           ++K + L  + +    +++ K   F+  S      +   V    
Sbjct: 192 ERKNNELRSLYEKIKELDELKTQFFANVSHELRTPLALIVGPTD 235


>gi|317403605|gb|EFV84095.1| proline sensor PrlS [Achromobacter xylosoxidans C54]
          Length = 944

 Score =  298 bits (762), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 101/578 (17%), Positives = 204/578 (35%), Gaps = 51/578 (8%)

Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH---PSLSAYFDEGENLTPETVD 327
                 T++  +   +Q F ++ +    +       +          +    +L    + 
Sbjct: 168 SVPAISTVSGFEPLTRQTFLSVVDAVGRAAGGADPEDRSHGEGPRVTWLRDADLPDMLIG 227

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKS-----VDDIEIAGGLSTLLDAP--------K 374
             P+   + +      A  S   ++          + I                     +
Sbjct: 228 MLPVTLPLNTRDGTLTARRSVYAVSLLSRGRVSISEQILREPLYDQFWLQHKGTGVLIGE 287

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQ----------WNRENSLAMTFIPFEKANQF 424
            +     +P   +  D   +  + R  +            +     L +T +        
Sbjct: 288 GAPPAVGQPGFHFGGDGLVLRIADRTGSWTGYYKLNYGSFFRANMWLPITVLLMLGLGLA 347

Query: 425 PENMPQNGIEPEDVDTRI-NKRKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVS 482
              +         +         M        ++L+     + +++R +G ++  N    
Sbjct: 348 AGAVYLLWYNRRVIQPAEIAHLDMVESEEFNRTVLDTAPVALCVLSRLDGRVVFGNALAI 407

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
           +  G  V +          +       N  L ++L      T+E      T E + L + 
Sbjct: 408 QWLGIAVGE----------QPRDSPEANKLLRQVLGASRPGTIE---TFRTHEGRPLFVA 454

Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
               +            DIS   + ++ L+ AK+ A++ +  KS FLA +SHEIRTPL  
Sbjct: 455 FAPTRYKKQDVVLCAFADISARAEMEHTLAQAKQQADRANEAKSTFLATMSHEIRTPLYG 514

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           ++G  EV+         +     + + I  S  ++  +++D+LDI+KIESG++ L  +  
Sbjct: 515 VLGTLEVLSLTHL----DDEQRRHVDRIQDSSVILQQLISDILDITKIESGQLGLEMDGF 570

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPS 721
              E V   ++     A +K ++I +    + P  ++ D   ++QI  N+++NAI FT S
Sbjct: 571 DPRELVQHCVASYAGMAEQKGLVIYSCIDTSTPAWVVGDGGRIRQILNNLVNNAIKFTDS 630

Query: 722 GGQI-IISTTHTSNEEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
           G  +  +      +       +V D+GVG++        +PF QI  S      G G+GL
Sbjct: 631 GHVVARLRAEVLPDGRARLHFQVVDSGVGISAENQVCLFEPFYQID-SGSHLVRGAGIGL 689

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
            +   + +       + S    G+   I   L DT+ P
Sbjct: 690 SICARLAELMGSTIQVTSELGLGSSFSIAIDL-DTAEP 726


>gi|254525934|ref|ZP_05137986.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Prochlorococcus marinus str. MIT 9202]
 gi|221537358|gb|EEE39811.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Prochlorococcus marinus str. MIT 9202]
          Length = 688

 Score =  298 bits (762), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 79/394 (20%), Positives = 177/394 (44%), Gaps = 41/394 (10%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            +++   ++  S++   +DG  +++ +G I+ TN    +LF +    +  K F   + + 
Sbjct: 288 EELKAAQIKQQSLIATMADGAILLDSQGKIVLTNPTAKRLFRWEGRFLEGKNFLNEIPEI 347

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEE-KLLSLRIIIKKLPFSSCYSLTMHDISE 563
             + ++  +  IL+ +  +   + +LG      +++   ++          ++T+ D++ 
Sbjct: 348 LSNDLHTNVESILNREKEKDDLRFSLGEPARTLRIVLQSVLDTNKVELKGIAVTIQDLTR 407

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
                           + ++ ++ F++ VSHE+RTPL  I  + E + + +   L +   
Sbjct: 408 --------------EVELNAAQNRFISNVSHELRTPLFNIKSYVETLHDLK-DQLSDEEQ 452

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
           IE+    +   + +  +VND+LD+S++ESGK+ +  + + +  A+ + +   +L A EK 
Sbjct: 453 IEFLGIANSETDRLTRLVNDVLDLSRLESGKI-VQLDQMDIKPAIEQTLRNYRLNATEKN 511

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST------------TH 731
           + +       IP IL +   + Q+  N+L N + F+P    +II              + 
Sbjct: 512 VTLAHDIEETIPLILGNFDLLLQVFDNLLGNGLKFSPKNSSLIIRAYTWPDSCPAFPPSI 571

Query: 732 TSNE-----------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
            ++            +V + + DTG G++  + EK    F ++ NS     +GTGLGL +
Sbjct: 572 KNDGAPQCELVSPLPKVRIEIADTGSGISQADQEKIFDRFYRVENSV-HTEQGTGLGLSI 630

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
            + +++ + G+  + S    GT       L  + 
Sbjct: 631 VRGIIEKHGGEIRMASELGVGTTFWFDLALAQSD 664


>gi|119510682|ref|ZP_01629810.1| two-component system sensory histidine kinase [Nodularia spumigena
           CCY9414]
 gi|119464636|gb|EAW45545.1| two-component system sensory histidine kinase [Nodularia spumigena
           CCY9414]
          Length = 574

 Score =  298 bits (762), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 79/309 (25%), Positives = 142/309 (45%), Gaps = 12/309 (3%)

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL--TMHDISEWKQEKN 569
                 ++     +          +    LR                    I    +   
Sbjct: 264 AWRTSRAIAEPVIIVTQVAEQVARKSNFDLR-APVTTEDEIGLLAKSLNRLIERVSERTK 322

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  AK++AE  S  KS FLA VSHE+RTPL A+IG S+++++          +I     
Sbjct: 323 ELEQAKELAEAASKAKSVFLANVSHELRTPLNAVIGLSQLLQDDATDLDLTGDFITDLET 382

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I+ +G  +L+++ND+LD+SKIE+GKM L+ E   + + ++  +  V+   ++   ++   
Sbjct: 383 INSAGRHLLELINDILDLSKIEAGKMTLYPETFEIAKLINNVVLTVKSAIDKNNNILEVY 442

Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN--------EEVILRV 741
               +  + AD   ++Q+ LN+LSN+  FT + G++ ++              + +   V
Sbjct: 443 CDQQLGTMYADQTRMRQVLLNLLSNSAKFT-TNGKVTLTVKREKTDLPPEAAFDMITFSV 501

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            DTG+GM+  + ++  KPF Q   S   R  GTGLGL +++       G+ ++ S P  G
Sbjct: 502 TDTGIGMSESQQQQLFKPFTQGDTSTTKRYGGTGLGLAISRHFCQMMGGEVFVKSQPGVG 561

Query: 802 TLIEIIFPL 810
           +   +  PL
Sbjct: 562 STFTVHLPL 570


>gi|323704635|ref|ZP_08116213.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323536097|gb|EGB25870.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 610

 Score =  298 bits (762), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 93/428 (21%), Positives = 185/428 (43%), Gaps = 25/428 (5%)

Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD-TRINKRKM 447
           ++R        + +I+  +E  L                +  N +             K+
Sbjct: 203 TNRFLKPMEYLIKSIREVKEGELDQVISIKTDDELGKLAVEFNNMIRRLKQYEESQLGKI 262

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
             E  +  SI+++ +D + ++N +  I+  N A  +LFG   ++ + K F + ++     
Sbjct: 263 IDERNKTLSIVKSINDPLLVLNSDYKIILLNGAAEELFGIEEKNAIDKHFLLSVKDE--- 319

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL--PFSSCYSLTMHDISEWK 565
            +   +  I+         +      K      + I   K      S   L  H+I+E+K
Sbjct: 320 KLFEQINAIVDSKFNINKVEQVKYGDK---YYDVTITPIKNYKSEISDILLVFHNITEFK 376

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
                         +    K DF++ +SHE +TPLT+I+  + +I  ++ G + N +   
Sbjct: 377 --------------ELDQAKDDFISIISHEFKTPLTSIMMGTSMILEEKIGVI-NDKQRS 421

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
               I+     + ++VN+L++++KIESGK   +F+  S+       +  +   ANEK + 
Sbjct: 422 TLVAIEEESEKLTELVNELIELTKIESGKEMYNFKCCSIFGIAQNTVKPLYNIANEKGVN 481

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +  +   ++P + AD   +  +  N+++NA+ +T +G  I IS +    + + + V+DTG
Sbjct: 482 LTNTIDEDMPGVYADPEKITWVLNNLITNALKYTDAGDDITISASV-DGDFMQISVKDTG 540

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
            G+     +K    F  + N  +   +GTGLGL + K +V+A+ GK +  S    G+   
Sbjct: 541 AGIPKEYKDKIFDKFFHVQNDDEFEIKGTGLGLAVVKEIVEAHGGKVWCESDIDIGSNFM 600

Query: 806 IIFPLYDT 813
              P+ D 
Sbjct: 601 FTLPICDE 608


>gi|311235082|gb|ADP87936.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris RCH1]
          Length = 1139

 Score =  298 bits (762), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 104/664 (15%), Positives = 202/664 (30%), Gaps = 64/664 (9%)

Query: 189  VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA 248
                     K        L +        +     I              + S L  Y  
Sbjct: 377  DKRRVEGKIKDQLSYLRQLTDTIPLPVYSKDADGRIRECNLAFLQFFSVERESVLGRYEW 436

Query: 249  HKDDVLKTEKYPLLTS---EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
               + L   +  + T    E       +     +        +  T  N        +  
Sbjct: 437  QAGERLALLRNAVDTDLMREPGQAAYDDTLPGPDGEARNVIVHKATYSNARGAIAGLVGV 496

Query: 306  ----RNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDI 360
                 +           E       +  P+  F  S  G+L  ANP+F  +  Y S   I
Sbjct: 497  VVDYTDRKRAEDSLRAAEEKYRSIFESSPLGIFRLSPEGSLSDANPAFARMAGYDSSPAI 556

Query: 361  --EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
              +    +  LL    L+       +                  +Q    N   M     
Sbjct: 557  MKQGRPAMDALLSGLDLARVGHEGILTWVA-------------DVQRPDGNRCTMHLTLL 603

Query: 419  EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
             + +         G   +    +  +R +      L  +L+     +   +R+   +  N
Sbjct: 604  IRRDALGALRLVEGYAEDITKRKETERALSASQRMLRLVLDNIPQFVYWTDRDLRFIGAN 663

Query: 479  RAVSKLFGY-PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
            R+    FG+    DI        L+ +   ++      ++     +  +     ++   +
Sbjct: 664  RSFLTFFGFAESHDISGLTMNDILDGSALEIVQEANHAVIETGNPR-YQSKLTITSPAGE 722

Query: 538  LLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
             + L      L       +    T  D+++    + +L  ++K+              +S
Sbjct: 723  KVWLETSRVPLMGERGDVVGLLTTAEDVTQRIHLERQLLQSQKM-----EAIGTLAGGIS 777

Query: 594  HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
            H+    LT+II   E+  N       +  + +      ++      +V  +L  S+    
Sbjct: 778  HDFNNILTSIINSIELAINDV--AADSLTFTDLMR-ALKAAQRGSRLVKQILTFSRPSVE 834

Query: 654  KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713
                 F  V L+E V+EA+ L++       I +RT+   +     AD   + Q+ +N+ +
Sbjct: 835  G----FTTVDLNEVVTEALVLIKASMPR-NIQVRTAVPPDPSITRADPTQLHQVIMNLCT 889

Query: 714  NAIHF-TPSGGQIIISTTHTSNE-------------EVILRVRDTGVGMTNYELEKAMKP 759
            N+ H    SGG + I+                     + L V D G G+    L+K   P
Sbjct: 890  NSFHALRESGGVLDINLEQEPIGPEEAHAFGVEPGCWLRLTVSDNGPGIPQEILDKIFDP 949

Query: 760  FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH---- 815
            F         + EGTGLGL +   ++  + G   + S   + T  EI+ P+ + +     
Sbjct: 950  FFTTKG----KTEGTGLGLAVVHGIIKGHRGAIRVSSLAHRRTAFEILLPMQEQTECPLS 1005

Query: 816  PHDC 819
            P D 
Sbjct: 1006 PADA 1009



 Score =  103 bits (258), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 42/366 (11%), Positives = 112/366 (30%), Gaps = 24/366 (6%)

Query: 239 KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE 298
           + +     + +K+         +L      + E   F+ +N   +        + + +  
Sbjct: 310 ERADEEYMFDNKELTRLFISRSMLPPGSVVINEPSRFYELNKQVFWTIIISLVILSLTLV 369

Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSV 357
                +  +   +     +  +   +  D  P+P +     G +   N +FL     +  
Sbjct: 370 LLVM-NILDKRRVEGKIKDQLSYLRQLTDTIPLPVYSKDADGRIRECNLAFLQFFSVERE 428

Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
             +             +L+         L R         A   T+      +  +    
Sbjct: 429 SVLGRYEWQ----AGERLALLRNAVDTDLMREPGQA----AYDDTLPGPDGEARNVIVHK 480

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
              +N         G+  +  D +  +  +     +  SI E++  GI  ++ EG +   
Sbjct: 481 ATYSNARGAIAGLVGVVVDYTDRKRAEDSLRAAEEKYRSIFESSPLGIFRLSPEGSLSDA 540

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE--ILSLDLRQTLEKITLGSTKE 535
           N A +++ GY     + K             M+  L+   +  +     L  +      +
Sbjct: 541 NPAFARMAGYDSSPAIMK--------QGRPAMDALLSGLDLARVGHEGILTWVADVQRPD 592

Query: 536 EKLLSLRIIIKKLPFSSCYSLTM----HDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
               ++ + +     +      +     DI++ K+ +  LS ++++      +   F+  
Sbjct: 593 GNRCTMHLTLLIRRDALGALRLVEGYAEDITKRKETERALSASQRMLRLVLDNIPQFVYW 652

Query: 592 VSHEIR 597
              ++R
Sbjct: 653 TDRDLR 658



 Score = 88.2 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 42/385 (10%), Positives = 99/385 (25%), Gaps = 16/385 (4%)

Query: 78  PIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL 137
                +   ++ DA G ++E +    +        ++G       + L +  N    DL+
Sbjct: 396 TDTIPLP-VYSKDADGRIRECNLAFLQFFSVERESVLGRYEWQAGERLALLRNAVDTDLM 454

Query: 138 KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG 197
           +         TL   +G    V +        +     +G    G+V             
Sbjct: 455 REPGQAAYDDTLPGPDGEARNVIV--HKATYSNARGAIAGL--VGVVVDYTDRKRAEDSL 510

Query: 198 KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257
           +  ++K+  + E           +  +         +   +   ++ +      D L + 
Sbjct: 511 RAAEEKYRSIFESSPLGIFRLSPEGSLSDANPAFARMAGYDSSPAIMKQGRPAMDALLSG 570

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
                   E  L    D    + N+ T        ++          +    +     + 
Sbjct: 571 LDLARVGHEGILTWVADVQRPDGNRCTMHLTLLIRRDALGALRLVEGYAEDITKRKETER 630

Query: 318 G----ENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                + +    +D  P    +         AN SFL    +    DI        L  +
Sbjct: 631 ALSASQRMLRLVLDNIPQFVYWTDRDLRFIGANRSFLTFFGFAESHDISGLTMNDILDGS 690

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
                  A   V+      T         TI       + +         +  + +    
Sbjct: 691 ALEIVQEANHAVI-----ETGNPRYQSKLTITSPAGEKVWLETSRVPLMGERGDVVGLLT 745

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSI 457
              +       +R++     ++ +I
Sbjct: 746 TAEDVTQRIHLERQLLQS-QKMEAI 769


>gi|320353635|ref|YP_004194974.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
           2032]
 gi|320122137|gb|ADW17683.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
           2032]
          Length = 1066

 Score =  297 bits (761), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 99/730 (13%), Positives = 201/730 (27%), Gaps = 66/730 (9%)

Query: 135 DLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR 194
           + L R   +         +G+ L +   +  L   S       +  F         N   
Sbjct: 219 ERLARSGAYKQPFVFLDPDGSGLEIDTLVDTL-RRSPAGSIVYYADFYKDRQGHTVNAEA 277

Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ------QSPPPHLRMKNKVSSLTEYYA 248
            +          +      +         + S                + K ++      
Sbjct: 278 IVPLVASHAPGPVFVHNATYLGYGVLGGKLNSGFDQGVTAGHLALQMWQGKKAAEIPVLT 337

Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINL--------NQYTKKQYFGTLQNNSKESF 300
              + +  +   L               T             + + +    L       F
Sbjct: 338 ENANRVMVDHQSLDRWNIPRSAVLTAAGTEEKNIIFLHKPEPFWRGRGGYFLAGLGFIVF 397

Query: 301 EYLSHR-------NHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLT 352
           + +              L               D  P    V    G     N +F  +T
Sbjct: 398 QAVLIAWLFQLLQRQQQLRREARNAAERFRALFDLAPFACVVNDQAGRYLMVNRAFTQIT 457

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
              + + +      + +L           +           +  + R H           
Sbjct: 458 GITAAEALGRTSQEAGVLLDRSAVRAIKRELDKHGVVAGMEVPVTIRRHRF------LHT 511

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG 472
           +           P          +    R  +  +     +   ++E  S  I   +  G
Sbjct: 512 LQASAMIDWESGPV---ILSATADITTIRQAEAALRESEERYRELVENASIIIIKFDISG 568

Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY--LTEILSLDLRQTLEKITL 530
           ++   N    K FG+  E++L +     +     S       +   +  D     + I  
Sbjct: 569 VLTFVNAYALKFFGFTEEELLGRNVVGTIVPEIDSNGQDLRVMMAAICQDTETFRDNINE 628

Query: 531 GSTKEEKLLSLRIIIKKLPFSSCYSLTM----HDISEWKQEKNKLSHAKKIAEKESSHKS 586
             T++ + L +    + +         +     D++  KQ +++    +    +    +S
Sbjct: 629 NMTRDGQRLWIHWNNRVIRDEHNRICEILSFGSDMTRRKQAEDERERLRDQLLQAQKMES 688

Query: 587 --DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
                  V+H+    L  IIG +E+            R       I  +     ++   L
Sbjct: 689 VGRLAGGVAHDFNNMLGVIIGHAELALTDAGLGT---RLRHDLQQILTAAERSAELTRQL 745

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704
           L  ++    K  +  + + L+++++E + +++     + + +       +  +  D   +
Sbjct: 746 LAFAR----KQPIAPKVLDLNQSITEMLKMLRRLI-GEDVQLLWRPGEGLWPVRIDPTQL 800

Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHT--------------SNEEVILRVRDTGVGMTN 750
            QI  N+  NA       GQI+I T +T                E V L V D G GM  
Sbjct: 801 TQILANLSINAKDAVVDDGQIVIETANTVLDAAYCTSRVGCIPGEYVQLMVCDNGCGMDQ 860

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
              E+   PF          G+GTGLGL     +V  N G     S P +GT   +  P 
Sbjct: 861 ATQERIFDPFFTTKG----HGQGTGLGLSTVSGIVTQNHGLIECASEPGQGTTFRLYLPR 916

Query: 811 YDTSHPHDCI 820
           +      + I
Sbjct: 917 FVGEVEEETI 926



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/310 (10%), Positives = 79/310 (25%), Gaps = 16/310 (5%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D  G    ++    +  G  A + +G    +   +L       I   L +     G    
Sbjct: 441 DQAGRYLMVNRAFTQITGITAAEALGRTSQEAGVLLDRSAVRAIKRELDKHGVVAGMEV- 499

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
            P+          L A  +       SG                 A  +  ++++  L E
Sbjct: 500 -PVTIRRHRFLHTLQASAMIDWE---SGPVILSATADITTIRQAEAALRESEERYRELVE 555

Query: 210 IKKGHSSVEKEKYDIFSQQS--------PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
                         +    +            L  +N V ++          L+     +
Sbjct: 556 NASIIIIKFDISGVLTFVNAYALKFFGFTEEELLGRNVVGTIVPEIDSNGQDLRVMMAAI 615

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
               E+      +  T +  +         +++      E LS  +  +     ++    
Sbjct: 616 CQDTETFRDNINENMTRDGQRLWIHWNNRVIRDEHNRICEILSFGSDMTRRKQAEDERER 675

Query: 322 TPETVDKCP--IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
             + + +          + G     N    ++  +  +  +  AG  + L    +     
Sbjct: 676 LRDQLLQAQKMESVGRLAGGVAHDFNNMLGVIIGHAEL-ALTDAGLGTRLRHDLQQILTA 734

Query: 380 AIKPVMLYRS 389
           A +   L R 
Sbjct: 735 AERSAELTRQ 744


>gi|153832905|ref|ZP_01985572.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio harveyi HY01]
 gi|148870828|gb|EDL69727.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio harveyi HY01]
          Length = 859

 Score =  297 bits (761), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 85/376 (22%), Positives = 164/376 (43%), Gaps = 23/376 (6%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            ++E +      +       I + + E +++  N A  K      +  +  P     ++ 
Sbjct: 351 EELEAQKKSFRDLFNFALSPIMVWSEESVLIQMNPAARKELVIEDDHEIMHPVFQGFKEK 410

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISE 563
               +           +   +           K+    +   ++    S   +   DI+ 
Sbjct: 411 LTPHLKMAAQGATLTGVNVPI---------GNKIYRWNLSPIRVDGDISGIIVQGQDITT 461

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + + + + A++ AEK +  ++DFLA++SHEIRTP+  I+G ++++K+     +     
Sbjct: 462 LIEAEKQSNIARREAEKSAQARADFLAKMSHEIRTPINGILGVAQLLKD----SVDTQEQ 517

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
               + +  SG  +L ++ND+LD SKIE GK N+   P S  + +    ++ +     K 
Sbjct: 518 KNQIDVLCHSGEHLLAVLNDILDFSKIEQGKFNIQKHPFSFTDTMRTLENIYRPICTNKG 577

Query: 684 IL--IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-----SNEE 736
           +   I      N+  I  D   + QI  N++SNA+ FTP+G  I +           N  
Sbjct: 578 VELVIENELDPNV-EIFTDQVRLNQILFNLVSNAVKFTPTGS-IRLHAELEQFYGAENSV 635

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           +++ + DTG+G+ + +L++  +PF Q   +      G+GLGL + K +VD   G   + S
Sbjct: 636 LVVELTDTGIGIESDKLDQMFEPFVQEEATTTREYGGSGLGLTIVKNLVDMLEGDVQVRS 695

Query: 797 TPAKGTLIEIIFPLYD 812
           +   GT   I  P+ D
Sbjct: 696 SKGVGTTFVITLPVKD 711


>gi|148555587|ref|YP_001263169.1| PAS/PAC sensor signal transduction histidine kinase [Sphingomonas
           wittichii RW1]
 gi|148500777|gb|ABQ69031.1| PAS/PAC sensor signal transduction histidine kinase [Sphingomonas
           wittichii RW1]
          Length = 798

 Score =  297 bits (761), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 115/750 (15%), Positives = 234/750 (31%), Gaps = 33/750 (4%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYA-----FKMIGMRLC--DVSDILHIDPNNHIGDLLKR 139
           + +   G +      L   +G  A      +M G  +   D   I  +D      D+   
Sbjct: 62  FRVGLDGRIG-ADPRLAHWLGLPAPPTTIDEMAGQGIAGQDGGGISVVDAEGLAADIAAA 120

Query: 140 QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSG-FRGFGIVHVNRVDNDPRALGK 198
                    +  + GT+  +       P    +      F            +       
Sbjct: 121 NQAGRAFERVLRLAGTDRVLLARGRPSPPAIGDGVIVWLFDNSEAERAITRLSAEGQAVS 180

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL---RMKNKVSSLTEYYAHKDDVLK 255
                   L E              +    S            +V +         D   
Sbjct: 181 DALDSCLALIEAAPFPMWHRGPDLKLALVNSAYVAAVEGESAEEVVTGGVELVDSADGRT 240

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
                L   +   +       T+   + T +            +      ++        
Sbjct: 241 PRATALAARDSGRIKTHVVPVTLGGQRRTMR-IVDVPMGEHGVAGYAFDIQDLEQTRGEL 299

Query: 316 DEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
              +    E  D+       +     L + N  FL           +       L    +
Sbjct: 300 GRFQEAQRELFDRLSAGVAQFGPDRSLIFCNQPFLQFFSLLPEWMSDHPEFDRVLERMRE 359

Query: 375 LSDNNAIKPVMLYRSDRTCI--AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
                  +    +++DR     A  A            L +   P               
Sbjct: 360 TQRLPEARDFPGWKADRRAWFNAVDAVEENWTIPGGQHLRVVAQPLPNG-------GLLL 412

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
              +  +        +  +    +  E   + I +   +G +   N++   ++G    D+
Sbjct: 413 FFEDRTEQVQLSSARDTLLRVRAATFENLFEAIGVFASDGRLHIWNQSFRDIWGLSDADL 472

Query: 493 LR-----KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
            +         +   +         L +++ +       +    +  + +     ++   
Sbjct: 473 AQNLRVDAMVELVAAKLADPSRAQLLRDLVRIATVDRQARTGRMALADGRYFDFAVVPLP 532

Query: 548 LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
                    T+ DI+  +  +  L       E+    K+ F+A +S+E+R PLT+I GF+
Sbjct: 533 ---DGNALFTLLDITASRGIEEALRGRADALEEADKLKTAFVANMSYELRVPLTSIAGFA 589

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
           E + +  +     P   EY   I  S   +  +V D+LD+++  +G + L  E V +   
Sbjct: 590 E-LLDGGYAGEMPPIAQEYVKAILASVGRLGSLVEDVLDLTQGAAGNLPLSEEQVDMGAL 648

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727
           ++ A++  +  A  K + +       +  I  D R ++QIA ++L+NAI +TP  G++ I
Sbjct: 649 LTGAVAAARPAAEGKPLQLLVDVEPGLGEIRGDPRRLRQIADHLLNNAITYTPPQGRVTI 708

Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
              H  ++ ++  V DTG GM   +       + +I  S     +  G+GLPL + +V+A
Sbjct: 709 RV-HGDDDMIVWVVSDTGPGMDAAQRAGIFDAYPRIDASNDEGKQLIGIGLPLTRQLVEA 767

Query: 788 NMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
           + G   + S P +GT + I  P     H H
Sbjct: 768 HGGSIALESEPGRGTTVTIHLPRRHGEHGH 797


>gi|27367166|ref|NP_762693.1| Autoinducer 2 sensor kinase/phosphatase luxQ [Vibrio vulnificus
           CMCP6]
 gi|50401046|sp|Q8D5Z6|LUXQ_VIBVU RecName: Full=Autoinducer 2 sensor kinase/phosphatase luxQ
 gi|27358734|gb|AAO07683.1| Autoinducer 2 sensor kinase/phosphatase luxQ [Vibrio vulnificus
           CMCP6]
          Length = 857

 Score =  297 bits (761), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 85/373 (22%), Positives = 168/373 (45%), Gaps = 19/373 (5%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            ++E +      +       + + +  G+++  N A  K  G   E    + F+  L Q 
Sbjct: 350 EQLESQRRSFQDLFNFALSPMMVWSESGLLIQMNPAAMKELGI--EHASPQDFSNPLFQL 407

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISE 563
               ++ +L           +          EK+    +    +    S   +   DI+ 
Sbjct: 408 FKLKLSPHLKMAAQGATLTGINVPI-----GEKIFRWNLSPIVVENGISGIIVQGQDITT 462

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
               + + + A++ AE+ +  ++DFLA++SHEIRTPL  I+G ++++K      + +   
Sbjct: 463 LIDAEKQSNLARREAEQSAKTRADFLAKMSHEIRTPLNGILGIAQLLKR----SVNDAEN 518

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
           ++  + +  SG  +L ++ND+LD SKIE GK N+     +  + ++   ++ +    EK 
Sbjct: 519 LKQVDVLCNSGEHLLAVLNDILDFSKIEQGKFNIKKRDFNFYDTLNTLENIYRPICREKG 578

Query: 684 ILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-----V 737
           +         +  ++  D   + QI  N++SNA+ FTP+G +I +S             +
Sbjct: 579 VSFEIHNQIPLDCQLHTDQVRLNQIMFNLISNAVKFTPAG-RIEVSFKLEKFARSEHSIL 637

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
            ++V DTG+G+   +LE   +PF Q  +       G+GLGL + K +V+   G+  + S 
Sbjct: 638 SIQVSDTGIGIDESKLESIFEPFVQADSLSTREYGGSGLGLTIVKNLVEMLEGEISVQSE 697

Query: 798 PAKGTLIEIIFPL 810
             KG+   +  P+
Sbjct: 698 LCKGSTFYLSIPV 710


>gi|86136340|ref|ZP_01054919.1| sensory box sensor histidine kinase/response regulator [Roseobacter
           sp. MED193]
 gi|85827214|gb|EAQ47410.1| sensory box sensor histidine kinase/response regulator [Roseobacter
           sp. MED193]
          Length = 536

 Score =  297 bits (761), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 97/375 (25%), Positives = 169/375 (45%), Gaps = 21/375 (5%)

Query: 448 EIEVMQLCSILEATSDGIAII--NREG--IILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            ++V  L +IL+A    + ++    +G    ++ N+   +    P E    K        
Sbjct: 3   RLQVNDLYAILDAVGMAVIVLEVGDDGVPRYIAMNKRSREFTKIPQEGWYGKSALEIFGG 62

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMH 559
           +T        T +     ++T E              +R  +  +  S+        +  
Sbjct: 63  STGERALAIHTSVARSAKKKTYEINLPAVQGTRH---IRTTMTPVFDSTGKLTHMVGSTE 119

Query: 560 DIS---EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
           D++   E          AK+ AE+ +  K  FLA +SHEIRTP+  I+G  E++K     
Sbjct: 120 DVTSERERDAALELTRIAKEKAEEANKAKERFLANMSHEIRTPMNGILGICELLKETEL- 178

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
              +     +A+ I  S N +L+I+ND+LD S+I + K++LH EP SL   + E   L+ 
Sbjct: 179 ---DKEQSLFADTIFNSTNALLEIINDVLDFSQITADKISLHPEPFSLRVLIEEIAVLLS 235

Query: 677 LYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTH-TS 733
                K +    ++  N+P + + D+  V+QI LN++ NAI FT  G   I +S    + 
Sbjct: 236 AKTAYKGLKFNVNYPENVPSLFIGDVSKVRQILLNLIGNAIKFTDEGHVSITVSHGQGSP 295

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
              +   + DTG G+   +L      F ++  +Q+   EGTGLGL +++A+V+   G+  
Sbjct: 296 AGPLQFEIADTGCGIEASKLGTIFSAFERVSGTQKNLSEGTGLGLAISQALVERMGGEIS 355

Query: 794 IFSTPAKGTLIEIIF 808
           + STP  GT   +  
Sbjct: 356 VKSTPDLGTTFRVSL 370



 Score = 38.1 bits (87), Expect = 6.8,   Method: Composition-based stats.
 Identities = 12/143 (8%), Positives = 36/143 (25%), Gaps = 5/143 (3%)

Query: 86  TWNIDAHG--YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTW 143
              +   G      +++   +          G    ++      +    I   + R    
Sbjct: 22  VLEVGDDGVPRYIAMNKRSREFTKIPQEGWYGKSALEIFGGSTGERALAIHTSVARSAKK 81

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFG-IVHVNRVDNDPRALGKRLDK 202
                  P      ++   +   P++    + +   G    V   R  +    L +   +
Sbjct: 82  KTYEINLPAVQGTRHIRTTM--TPVFDSTGKLTHMVGSTEDVTSERERDAALELTRIAKE 139

Query: 203 KFSHLHEIKKGHSSVEKEKYDIF 225
           K    ++ K+   +    +    
Sbjct: 140 KAEEANKAKERFLANMSHEIRTP 162


>gi|229174303|ref|ZP_04301836.1| hypothetical protein bcere0006_33960 [Bacillus cereus MM3]
 gi|228609160|gb|EEK66449.1| hypothetical protein bcere0006_33960 [Bacillus cereus MM3]
          Length = 510

 Score =  297 bits (761), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 100/529 (18%), Positives = 199/529 (37%), Gaps = 39/529 (7%)

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTK 353
           +S +   + +                +        P     +   G + + NPS   +  
Sbjct: 7   SSTQRKRHPNISRRLRNHIQDRSLTEMYASLFKHNPDSIISLNLEGVILHINPSAEKILG 66

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
           Y S++ +E     S L       + +  + V+    +         + +I       L +
Sbjct: 67  YNSLE-LEQKNITSIL-------EAHISEQVLQNIKNTGADNQQEYILSIYHKNGFLLDV 118

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
                    Q         ++P +   RI +  ++    +L +++ +    +   + EG 
Sbjct: 119 VTKLVPIFVQNRLTGVYAIMKPLEKSERI-ENMLKESEKRLRTLVNSMPAFVIFKDHEGR 177

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN----HYLTEILSLDLRQTLEKIT 529
            L  N      F +       K  +  ++ N            + E+     RQ L    
Sbjct: 178 WLEANDYALSCFNFHHVPYHGKKDSELIQYNEAYREAFLHCEEVDELAWQ-QRQILHGEE 236

Query: 530 LGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
               +++  L L I    L  S        +   D++E K+ +  L  ++K+A       
Sbjct: 237 FIIHRDDFDLILSISKVPLYHSDGSRKGLIVMGRDVTELKETEKLLRKSEKLAVV----- 291

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
               A ++HEIR PLT++ GF  ++      P  N     Y + +    + +  I +  +
Sbjct: 292 GQLTAGIAHEIRNPLTSLKGFLTLLL-----PEINAEQKWYIDVMLSEISQMESITSQFM 346

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
            +SK +     L  +  ++   + E ++ +   A    + I     + +  I  D   +K
Sbjct: 347 AMSKPQ----VLSIQTCNIQALIEEVVTFILPTAIMHSVHIIMDHFDYVYDIQCDGNQLK 402

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           Q+ +NIL NAI   P+GG I I T    N  +++R+ D G G+    + +  +PF     
Sbjct: 403 QVFINILKNAIEAMPNGGNIFIQTKPLENTFILIRIIDEGCGIPEDRISRLGEPFY---- 458

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
              ++ +GTGLGL +   +++ + GK +I S   KGT+++I  PL  + 
Sbjct: 459 --SLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTIVDIQLPLSSSH 505


>gi|297619344|ref|YP_003707449.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus voltae A3]
 gi|297378321|gb|ADI36476.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus voltae A3]
          Length = 654

 Score =  297 bits (761), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 68/250 (27%), Positives = 135/250 (54%), Gaps = 4/250 (1%)

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           ++ ++   +LS +    ++  + KSD +A  SHE+RTPLT++ G+ E++ +   G + N 
Sbjct: 386 TKLQKHAQELSKSYDELKELDNLKSDLIAIASHELRTPLTSVKGYVELVLDGTMGEV-NE 444

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
              +  +  + + + +  +++ +LD+SKIE G++ +  E +++  AV E    ++   +E
Sbjct: 445 AQSKCLSIANDNIDRLRRLIDSMLDLSKIERGELQMQKELMNMKVAVDEVFENLKPLFDE 504

Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
           K I +     N    +  D   + Q+  N++ NAI F P+ G+I +   +     + L V
Sbjct: 505 KNIRLVKDVQN--LSLYGDKDRLMQVITNLVENAIKFNPTNGEIYLG-AYEDEGNIHLIV 561

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
           +D G G+   +LEK    F Q+ +S +    G+GLGL + K++V+A+ G  ++ S   KG
Sbjct: 562 QDHGAGIPEKDLEKIFDRFYQVDSSSKRPKGGSGLGLAVCKSIVEAHEGIIWVESELGKG 621

Query: 802 TLIEIIFPLY 811
           +   +I P++
Sbjct: 622 STFHVILPIF 631


>gi|152983965|ref|YP_001346804.1| sensory box histidine kinase/response regulator [Pseudomonas
           aeruginosa PA7]
 gi|150959123|gb|ABR81148.1| sensory box histidine kinase/response regulator [Pseudomonas
           aeruginosa PA7]
          Length = 1199

 Score =  297 bits (761), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 115/702 (16%), Positives = 238/702 (33%), Gaps = 37/702 (5%)

Query: 132 HIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN 191
               L  R++       +                 P     + F+    F + H  R   
Sbjct: 242 AFAALASRRDLVTLVDHVLETTPDTRKHEFLQRWTPSR---QLFAPADAFALSHGEREWL 298

Query: 192 DPRALGKRLDKKFSHLHEIKKGHSS--VEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH 249
             +   + + +                +  +     S     P   +  +  +  +    
Sbjct: 299 KKKQPLRLIAQSAPPYFFRNSHGQWDGLGLDVLRYLSDAYELPLEILDAQSPAQDQRRLE 358

Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
           + + L     P        L     F   +     ++         +          NHP
Sbjct: 359 RGEALLASSIPPTPERRRRLAFSMPFGVQDWAFVIRRHASSPSSLEAMAGRRLAIAGNHP 418

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYSHGNL------FYANPSFLLLTKYKSVDDIEIA 363
                 +    +           F +   G +       + NP +L     +  + IE  
Sbjct: 419 LRDYLENRYPRIDLVLTASGHESFSLVESGEVDATLQSIHNNPRWLQEHGLRQGEHIEAT 478

Query: 364 GGLSTLLDAPKLSD--NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                   AP   +      K +     D    +    + +   +      +    +   
Sbjct: 479 PTPQVFALAPGHGELLGILDKLLGNLAQDGDAGSGLRLMASGAQDDNLWQHLPEGFWHAL 538

Query: 422 NQFPENMPQNGIEPEDV-----DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476
                 +  + +    +       RI + ++  ++    S+L      + + + EG + +
Sbjct: 539 LLAAVIILLSLLWNWRLKKQVQQRRIAQNQLRDQLAFQFSLLNGLPTPLYVRDLEGRLST 598

Query: 477 TNRAVSKLFGYPVEDILRKPFTV--FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
            NRA  + F   +E++     +       +    +     E+L     + L+     + +
Sbjct: 599 CNRAYEQFFASSLEEMRGTTPSEQGICPPSLARTLEFEYGELLQHRQPRYLDCCIEVAGE 658

Query: 535 EEKLLSLRIIIKKLPFS-SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
             ++    +                 DISE K  + +L  A++ A   S+ K  FLA +S
Sbjct: 659 AHQIYQWLVPFYNARGKLQGLLGGWIDISERKHLETQLRDARQAAMAASAAKGQFLASMS 718

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HE+RTPL A++G  E     +  P       E      RS + ++D++ ++LD+ KIESG
Sbjct: 719 HELRTPLNALVGLLE--LEGQRAPS------ENLRIAQRSASSMIDLIGNILDLDKIESG 770

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILADLRSVKQIALNIL 712
           +M L  +P  L   +S+++ L    A ++ + +    +     R   D   ++Q+  N+L
Sbjct: 771 QMQLAPQPTDLGSLLSDSLELFVAQARQRNLALVLDCSLPAQRRYRVDPLRLRQVLYNLL 830

Query: 713 SNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
           SNA+ FT +G ++ +S      E+    +  RV DTG+G+      + ++P+ Q      
Sbjct: 831 SNALKFTEAG-RVRLSVAERPQEDGRSLLAFRVSDTGIGIPRELQPRLLEPYRQAHADTA 889

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL--IEIIF 808
           +R  G+GLGL +   +V     + ++ S P +G     E+  
Sbjct: 890 LRYGGSGLGLSICSQLVQLMGARLWLDSEPGQGCAAGFELSL 931



 Score = 37.3 bits (85), Expect = 9.8,   Method: Composition-based stats.
 Identities = 36/355 (10%), Positives = 76/355 (21%), Gaps = 14/355 (3%)

Query: 66  NYLDSENTFVFDP-IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCD--VS 122
           N L  +  F F              D  G L   +    +   +   +M G    +  + 
Sbjct: 567 NQLRDQLAFQFSLLNGLPTPLYVR-DLEGRLSTCNRAYEQFFASSLEEMRGTTPSEQGIC 625

Query: 123 DILHIDPNN-HIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF 181
                       G+LL+ +           + G    +   L  +P Y+   +  G  G 
Sbjct: 626 PPSLARTLEFEYGELLQHRQP-RYLDCCIEVAGEAHQIYQWL--VPFYNARGKLQGLLGG 682

Query: 182 GIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS 241
            I              +   +        K    +    +                 +  
Sbjct: 683 WI--DISERKHLETQLRDARQAAMAASAAKGQFLASMSHELRTPLNALVGLLELEGQRAP 740

Query: 242 SLTEYYAHKDDVLKTEKYP--LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
           S     A +      +     L   +  S   Q      +L           +    + +
Sbjct: 741 SENLRIAQRSASSMIDLIGNILDLDKIESGQMQLAPQPTDLGSLLSDSLELFVAQARQRN 800

Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVD- 358
              +   + P+   Y  +   L     +           G +  +            +  
Sbjct: 801 LALVLDCSLPAQRRYRVDPLRLRQVLYNLLSNALKFTEAGRVRLSVAERPQEDGRSLLAF 860

Query: 359 -DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
              +   G+   L    L            R   + +  S     +Q        
Sbjct: 861 RVSDTGIGIPRELQPRLLEPYRQAHADTALRYGGSGLGLSICSQLVQLMGARLWL 915


>gi|229148082|ref|ZP_04276417.1| hypothetical protein bcere0012_51990 [Bacillus cereus BDRD-ST24]
 gi|228635387|gb|EEK91882.1| hypothetical protein bcere0012_51990 [Bacillus cereus BDRD-ST24]
          Length = 590

 Score =  297 bits (761), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 89/501 (17%), Positives = 176/501 (35%), Gaps = 41/501 (8%)

Query: 314 YFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                E      +   P+    +  +G+    N    ++T Y + + I     L  L   
Sbjct: 102 LLSRKEEELHTILQNMPVMVDALDYNGDFVLWNRECEIVTGYTAEEIIGNPNALQLLYPD 161

Query: 373 PKLSDNNAIKPVM----LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
                    K +         +      +  + TI W+                      
Sbjct: 162 HNYRHQIQKKFLTCGKNFRDWEMHLTCKNGEIKTIMWSN-----------ISEQFPVTGY 210

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
               +  +    +  + +++ +  +L  I +A  D   +   +G I+         F  P
Sbjct: 211 SYWAVGVDITHLKAIEEQLKQQTSELELIFKALPDLCFLTEDDGTIIDYKAGSPTKFYVP 270

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            E  + K F   L  +        + ++        +E           +         L
Sbjct: 271 AEAFMGKKFYEVLPTSVAQQFQEAINQVKEKGTNVIVEYPLTL---NGSIDFFEARCLPL 327

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                  + + DI+E K+ +  L+ +  +A           A V+HE+R PLT I GF +
Sbjct: 328 LHDK-IMIIVRDITERKKTEELLNKSDTLA-----AIGQLAAGVAHEVRNPLTVIKGFIQ 381

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
                    +       Y + +      +  I+ + L I+K +     ++ E  ++    
Sbjct: 382 ------LFQINKEDQERYFDLMLSEIERIEAILQEFLSIAKTD----EINTEKKNIYRIF 431

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
              +SL+   A  K I +     +    I      +KQ+ +NIL N+I   P+GG+I I 
Sbjct: 432 KNVVSLMNTKAIMKNIQVELFTDDKDIIIECSENQLKQVFINILQNSIEAMPNGGEISIH 491

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
               +++ VI+ V D G+G+    +++  +PF         + +GTG+GL L+  +++++
Sbjct: 492 IKEINDDGVIIHVIDEGIGIPEERIKRLGEPFY------STKEKGTGIGLMLSYKIIESH 545

Query: 789 MGKFYIFSTPAKGTLIEIIFP 809
            G   I S    GT + I  P
Sbjct: 546 QGTISIMSEVGVGTTVTIYLP 566


>gi|218129844|ref|ZP_03458648.1| hypothetical protein BACEGG_01425 [Bacteroides eggerthii DSM 20697]
 gi|217987954|gb|EEC54279.1| hypothetical protein BACEGG_01425 [Bacteroides eggerthii DSM 20697]
          Length = 629

 Score =  297 bits (761), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 103/506 (20%), Positives = 195/506 (38%), Gaps = 44/506 (8%)

Query: 323 PETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
                  P+   +Y+  G L   N   L +   +  +D+         +   ++ +    
Sbjct: 137 HNIYKNLPVGIELYNMQGVLTDLNDKELEMFHLQQKEDLLGINIFDNPIFPDEMKEK--- 193

Query: 382 KPVMLYRSDRTCIAASARLHTI-----QWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
               L + +            I        +  ++ +        ++    +    I  +
Sbjct: 194 ----LRKFEDADFTFRYDFSKIGNYYNSQKKTGTMELVTKVTTLYDEHHTPINYLLINAD 249

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIA---IINREGIILSTNRAVSKLFG----YPV 489
             +  I   K++        I      G A   ++ ++G       +     G     P+
Sbjct: 250 KTEATIAYNKIQEFESFFKLIGNYAKVGYAHYNLLTQKG---DAQHSWYINIGEKEETPL 306

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII---- 545
            DI+       +  +    M  +L             K      +        + +    
Sbjct: 307 SDIIG--VYNHIHPDDRHYMLDFLNNARK-GTENKFNKEVRVLRENGSCSWTHVNLLVKV 363

Query: 546 -KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
                 S       +DI+  K+ +  L  AK+ AE+    KS F+A +SHEIRTPL AII
Sbjct: 364 YAPEQNSIELICINYDITRLKETEAMLIQAKEKAEESDRLKSAFIANMSHEIRTPLNAII 423

Query: 605 GFSEVIKNQRFGPLGNPRYIEY-ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           GFS ++       + + +  EY  + I+ +  L+L+I+N++LD+SKIE+G M L     S
Sbjct: 424 GFSGLL-----PYMEDAKEREYYISLINHNNKLLLNIINEVLDLSKIEAGHMELTPVWFS 478

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
           L E + E+ +  +    E  + ++  +  +   I  D   +KQI  N+LSNA+  T  G 
Sbjct: 479 LSELIDESCTEYRSNVPE-GVTLKKRYPASPFLIEQDSMRIKQILSNLLSNALKNTTQG- 536

Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
            + +S     +  V + V DTG G+   +L    + F ++ +      +G GLGL + K+
Sbjct: 537 YVEVSYETEQSG-VKISVTDTGRGIPQEKLGVIFERFEKVDSYI----QGAGLGLSICKS 591

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFP 809
           +++   G   + S   +G+   + FP
Sbjct: 592 IIEQMNGTIEVASVLGEGSTFTVTFP 617


>gi|254487929|ref|ZP_05101134.1| sensory box histidine kinase/response regulator [Roseobacter sp.
           GAI101]
 gi|214044798|gb|EEB85436.1| sensory box histidine kinase/response regulator [Roseobacter sp.
           GAI101]
          Length = 786

 Score =  297 bits (761), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 88/472 (18%), Positives = 172/472 (36%), Gaps = 16/472 (3%)

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPV--MLYRSDRTCIAASARLHTIQWNRENSLAMT 414
            D + I       L A      +    V   + R   + ++  A L   +          
Sbjct: 56  DDTVGIIDAPDAELVARFSELQSKASEVGPAVRRLSNSGLSYFALLSDRRRTNVAVTLSQ 115

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII 474
                             +   +  +   +        ++  +   + D + + +  G I
Sbjct: 116 MAVGVTVLLLAMLFLALYLGYLNRQSNRQRIAAVEASHRMNIVTSTSLDAVIVADAAGKI 175

Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY-LTEILSLDLRQTL---EKITL 530
           L  N A  ++FGY   D + +     +  +     +   +  +     R  +        
Sbjct: 176 LDFNAAAEQIFGYQAGDAIGQDLGALIVPDDHRPGHEAGMQRMRENGARHVIGMGRVQLE 235

Query: 531 GSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
              +      + + ++         +   + DIS   Q + +L  A+  A      K+DF
Sbjct: 236 AKRRGGACFPIELAVQSAQTEEGEIFIAFLRDISSRIQAEQELVTARDRALAGEKAKTDF 295

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
           LA +SHEIRTP    +                 +   Y   +D SG L++  ++D+LDI+
Sbjct: 296 LATMSHEIRTP----LNGLLGNLTLLHDTDLTAQQSRYIKNMDTSGKLLMSHISDVLDIT 351

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS-FANNIPRILADLRSVKQI 707
           K ++GK+ L    +++   + + +      A  +   +  +  +  +  I AD   V+ I
Sbjct: 352 KYDAGKLLLRPTAMNISTLLQDIVDNQSSAATARGTTLEWAWTSPPVDWIRADRERVQHI 411

Query: 708 ALNILSNAIHFTPSGG-QIIISTTHTSNE--EVILRVRDTGVGMTNYELEKAMKPFGQIP 764
            +N++ NA+ FT  G   + ++  +      E+   V DTG+G+      +    F    
Sbjct: 412 LMNVIGNAVKFTHQGRITVHVAVANREGGMPEIEFIVADTGIGIDPDLQCQIFDDFTTGD 471

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           +S      GTGLGL +A+  V A  G+  + ST   G+   I FP+   + P
Sbjct: 472 SSYDRNVGGTGLGLGIAQRFVKAFGGEIELESTKGVGSTFSIRFPIEPIAAP 523



 Score = 46.2 bits (108), Expect = 0.024,   Method: Composition-based stats.
 Identities = 28/289 (9%), Positives = 65/289 (22%), Gaps = 15/289 (5%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           DA G + + +    +  G  A   IG  L  +       P +  G    R+N       +
Sbjct: 170 DAAGKILDFNAAAEQIFGYQAGDAIGQDLGALIVPDDHRPGHEAGMQRMRENGARHVIGM 229

Query: 150 WPIEGTNLY-----VPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
             ++           PI+LA     +   E         +                  + 
Sbjct: 230 GRVQLEAKRRGGACFPIELAVQSAQTEEGEI----FIAFLRDISSRIQAEQELVTARDRA 285

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPP-----HLRMKNKVSSLTEYYAHKDDVLKTEKY 259
               + K    +    +                   +  + S   +       +L +   
Sbjct: 286 LAGEKAKTDFLATMSHEIRTPLNGLLGNLTLLHDTDLTAQQSRYIKNMDTSGKLLMSHIS 345

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR-NHPSLSAYFDEG 318
            +L   +    +     T        +       + +      L      P +     + 
Sbjct: 346 DVLDITKYDAGKLLLRPTAMNISTLLQDIVDNQSSAATARGTTLEWAWTSPPVDWIRADR 405

Query: 319 ENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
           E +    ++           G +               ++ I    G+ 
Sbjct: 406 ERVQHILMNVIGNAVKFTHQGRITVHVAVANREGGMPEIEFIVADTGIG 454


>gi|78062490|ref|YP_372398.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. 383]
 gi|77970375|gb|ABB11754.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. 383]
          Length = 672

 Score =  297 bits (761), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 95/376 (25%), Positives = 156/376 (41%), Gaps = 20/376 (5%)

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
           L  +++A+ D I  ++    I S N A  ++FG        +     +           L
Sbjct: 155 LRHVVDASPDAIVGVDAARRITSWNPAARRIFGIDAAQAAGRDVAAMIAPRWLRHHP--L 212

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKN 569
               +           L   ++            +  +       S+T+ D  E ++ + 
Sbjct: 213 PASFANLHASVGPLDVLCVRRDGGRFRATFAAAPMVDTQGNCTGLSMTLRDAHERRRGER 272

Query: 570 K-------LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +          A+  A+  +  K + LA VSHE+RTPL  I G+ EV++N     L    
Sbjct: 273 RNLRSLRGARDARAQADTSNRLKDELLATVSHELRTPLNVIYGWVEVLRNVDGQGLA--- 329

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             +  + IDRS   +  +V DLLD S + +G++ L   PV L   V +    +   A   
Sbjct: 330 -QQAVDAIDRSARSLSHMVADLLDASSLATGRLRLERVPVDLVRVVRDTTRELDATAQAS 388

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
            + + T +A     I AD   V+Q+  N+LSNAI FTP GG+I++S    + E V L V 
Sbjct: 389 GLELSTHYAMPTCVIPADRERVRQVLSNLLSNAIKFTPPGGRIVVSLA-RAGERVRLSVA 447

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKG 801
           DTG G+    L    + F +   +      G GLGL + + +   + G     S  P +G
Sbjct: 448 DTGQGIAPEYLPHLFETFSRPERAFASPKRGLGLGLSIVRNIAQLHGGDVVATSAGPGRG 507

Query: 802 TLIEIIFPL-YDTSHP 816
           T + +  P  +D   P
Sbjct: 508 TTVTVTLPAGWDVDDP 523



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 37/483 (7%), Positives = 105/483 (21%), Gaps = 31/483 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +DA   +   +    +  G  A +  G  +  +     +  +          +   G   
Sbjct: 169 VDAARRITSWNPAARRIFGIDAAQAAGRDVAAMIAPRWLRHHPLPAS-FANLHASVGPLD 227

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           +  +           AA P+       +G      +              R  +      
Sbjct: 228 VLCVRRDGGRFRATFAAAPMVDTQGNCTGLS--MTLRDAHERRRGERRNLRSLRGARDAR 285

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKN--KVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
                 + ++ E     S +   P   +    +V    +        +        +   
Sbjct: 286 AQADTSNRLKDELLATVSHELRTPLNVIYGWVEVLRNVDGQGLAQQAVDAIDRSARSLSH 345

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF----------D 316
                 +           ++     ++     + E  +      L               
Sbjct: 346 MVADLLDASSLATGRLRLERVPVDLVRVVRDTTRELDATAQASGLELSTHYAMPTCVIPA 405

Query: 317 EGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
           + E +     +       F    G +  +        +    D      G++        
Sbjct: 406 DRERVRQVLSNLLSNAIKFTPPGGRIVVSLARAGERVRLSVAD---TGQGIAPEYLPHLF 462

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
              +  +           +  S   +  Q +  +   +                  G + 
Sbjct: 463 ETFSRPERAFASPKRGLGLGLSIVRNIAQLHGGD--VVATSAGPGRGTTVTVTLPAGWDV 520

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDG--IAIINREGIILSTNRAVSKLFGYPVEDIL 493
           +D    +       E   L        DG  + +++ +    ++  A  +  G  V    
Sbjct: 521 DDPVENLLHAAGAPETATL--------DGQRVLVVDDDATSRASLAAALETMGAQVSTAQ 572

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553
                + + +     +      +   D    L++I         L  + +          
Sbjct: 573 SGHDALDVVERQAPNVVLSDLAMPDGDGFWLLDRIRHLPGGSGHLPVVAVTAHAGNADRH 632

Query: 554 YSL 556
             +
Sbjct: 633 RVM 635


>gi|229085487|ref|ZP_04217725.1| hypothetical protein bcere0022_21000 [Bacillus cereus Rock3-44]
 gi|228697792|gb|EEL50539.1| hypothetical protein bcere0022_21000 [Bacillus cereus Rock3-44]
          Length = 588

 Score =  297 bits (761), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 89/503 (17%), Positives = 182/503 (36%), Gaps = 33/503 (6%)

Query: 314 YFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
              + E      +   PI    +   GN    N    L+T Y + + +     L  L   
Sbjct: 104 LLSQKEEQLHTILQNMPILVDALDKDGNFILWNRECELVTGYAAEEIVGNPKALELLYPD 163

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
                             ++       L     + +  +                     
Sbjct: 164 GNYRK---QMQKKFSIRGKSFRDWEMNLTCKNGDVKTIMWSNISEQFPVPG----YSYWA 216

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
           +  +    +  + +++ +  +L  I +A  D   +   +G I+      +  F  P E  
Sbjct: 217 VGVDITHRKGMEEQLKQQTSELELIFKALPDLCFLTEADGTIIDYKAGSTAKFYVPAESF 276

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
           + + F   L  +        + ++   +    +E               R +       +
Sbjct: 277 MGQKFYEVLPSSVAQQFQEAIHQVQQKESTVIVEYPLTLK-GSVSFFEARCLPLL---QN 332

Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
              + + DI+E K+ +  L+ +  +A           A V+HE+R PLT I GF +    
Sbjct: 333 KIMILVRDITERKKTEELLNKSDTLA-----AIGQLAAGVAHEVRNPLTVIKGFIQ---- 383

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
                +      +Y + +      +  I+++ L I+K +     +  E  ++   +   +
Sbjct: 384 --LFQINQEDQNKYFDLMLSEIERIESILHEFLSIAKTD----VIPIEKKNICSILRNVV 437

Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
           SL+   A    I I     +    I      +KQ+ +NIL N+I   P+GG I IS   +
Sbjct: 438 SLINTKAIMTNIQINLHIESKELLIDCCENQLKQVFINILQNSIEAMPNGGTISISMKKS 497

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
             EEV++ + D GVG+    +++  +PF         + +GTG+GL L+  +++++ G+ 
Sbjct: 498 EREEVVIHIVDEGVGIPEERIKRLGEPFY------STKEKGTGIGLMLSYKIIESHQGRI 551

Query: 793 YIFSTPAKGTLIEIIFPLYDTSH 815
            I S   +GT + I  P++ +  
Sbjct: 552 SIMSEVGRGTSVTIYLPIFQSEQ 574


>gi|197336284|ref|YP_002156881.1| signal transduction histidine-protein kinase BarA [Vibrio fischeri
           MJ11]
 gi|197317774|gb|ACH67221.1| signal transduction histidine-protein kinase BarA [Vibrio fischeri
           MJ11]
          Length = 931

 Score =  297 bits (761), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 87/340 (25%), Positives = 158/340 (46%), Gaps = 17/340 (5%)

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
           F Y +   + +P +  +      V++      L + +   L             +++ + 
Sbjct: 191 FAYRLMQDVTQPISHMVS-----VVDRIRRGHLDVRIENKLHGELDTLKNGINAMAISLS 245

Query: 545 IKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
              +           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTPL
Sbjct: 246 EYHVEMQQSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPL 305

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
             +IGF+  +         +    +Y   I+RS N +L I+ND+LD SK+E+GK+ L   
Sbjct: 306 NGVIGFTRQMLKTSL----SENQQDYLQTIERSANNLLTIINDILDFSKLEAGKLLLENL 361

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFT 719
           P    +++ E +SL+   A+EK + I       +P  ++ D   ++Q+  N++ NAI FT
Sbjct: 362 PFDFQDSLDEVVSLLAPSAHEKGLEITLKIDQRVPSGLIGDPLRIQQVLNNLVGNAIKFT 421

Query: 720 PSGGQ-IIISTTHTSNEEV--ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
             G   I +   H +++ V     VRDTG+G++  +  +  + F Q   S   R  GTGL
Sbjct: 422 EKGNIDISVELKHLADDYVDLQFVVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGL 481

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           GL + + ++    G+  + S   +G+       ++ T  P
Sbjct: 482 GLVITQKLISQMGGEIGLSSRLHQGSTFWFTIRMHPTDLP 521


>gi|254452843|ref|ZP_05066280.1| sensory box histidine kinase/response regulator [Octadecabacter
           antarcticus 238]
 gi|198267249|gb|EDY91519.1| sensory box histidine kinase/response regulator [Octadecabacter
           antarcticus 238]
          Length = 734

 Score =  297 bits (761), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 84/383 (21%), Positives = 171/383 (44%), Gaps = 15/383 (3%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
           +R+    + ++  ++  + DG+ + + +G IL  +RA   +FGY    +L + F   +  
Sbjct: 106 EREKSQAMTRMKMVIGTSLDGVVVCDLDGKILELSRAAEAIFGYSEAAVLGRNFGSVIVP 165

Query: 504 NTPSVMNHY-LTEILSLDLRQTLEK---ITLGSTKEEKLLSLRIIIKKLPFSSC--YSLT 557
           N         +  +     ++ + K         K+  +  + I I+         +   
Sbjct: 166 NHLCAAQDAGMARMKMGGDKKVIGKGRVQLEAQHKDGHIFPVEIAIQSATTDEGEIFIAF 225

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
           + DIS   + +  L  A+  A      K++FL  +SHEIRTPL  ++G   ++++     
Sbjct: 226 LRDISRRVKAEAALVTARDKALASEKMKTEFLTTMSHEIRTPLNGLLGSMALLRDTAL-- 283

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
                   Y +Y++ SG L+L  V+++LDI+  + GK+N + EP+++ E + + +     
Sbjct: 284 --TENQDRYISYMETSGRLLLSHVSNVLDITSYDVGKLNTNIEPMNISELMQDIVDSQSG 341

Query: 678 YANEKRILIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII---STTHTS 733
            A   +  +   +    +  I +D   ++ + +N++ NA+ FT  G ++ +   S   + 
Sbjct: 342 TAFTNKTSLVWGWNGPKMDWIFSDHERLQHVMMNLVGNAVKFTRCG-KVSVMIESFGKSD 400

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
              + + + DTG GMT    ++    F     +      GTGLGL +AK  V+A  G+  
Sbjct: 401 GARLRISIADTGQGMTEDLAKRVFDDFVTGNTAYDREVGGTGLGLSIAKRFVNALGGEIG 460

Query: 794 IFSTPAKGTLIEIIFPLYDTSHP 816
           + S   +G+      P+ +   P
Sbjct: 461 VRSIVDEGSTFWFELPVREAESP 483



 Score = 46.6 bits (109), Expect = 0.019,   Method: Composition-based stats.
 Identities = 15/141 (10%), Positives = 33/141 (23%), Gaps = 9/141 (6%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D  G + E+S       G     ++G     V    H+      G    +          
Sbjct: 131 DLDGKILELSRAAEAIFGYSEAAVLGRNFGSVIVPNHLCAAQDAGMARMKMGGDKKVIGK 190

Query: 150 WPIEGTNLY-----VPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
             ++    +      P+++A     +   E         +          A       K 
Sbjct: 191 GRVQLEAQHKDGHIFPVEIAIQSATTDEGEI----FIAFLRDISRRVKAEAALVTARDKA 246

Query: 205 SHLHEIKKGHSSVEKEKYDIF 225
               ++K    +    +    
Sbjct: 247 LASEKMKTEFLTTMSHEIRTP 267


>gi|126696865|ref|YP_001091751.1| two-component sensor histidine kinase [Prochlorococcus marinus str.
           MIT 9301]
 gi|126543908|gb|ABO18150.1| two-component sensor histidine kinase [Prochlorococcus marinus str.
           MIT 9301]
          Length = 688

 Score =  297 bits (761), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 80/394 (20%), Positives = 175/394 (44%), Gaps = 41/394 (10%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            +++   ++  S++   +DG  +++ +G I+ TN    +LF +    +  K F   + + 
Sbjct: 288 EELKAAQIKQQSLIATMADGAILLDSKGKIVLTNPTSKRLFRWEGRFLEGKYFLNEIPEI 347

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEE-KLLSLRIIIKKLPFSSCYSLTMHDISE 563
             + ++  +  IL+ +  +   + +LG      +++   ++          ++T+ D++ 
Sbjct: 348 LSNDLHTNIESILNREKEKDDLRFSLGEPARTLRIVLQSVLDTNKVELKGIAVTIQDLTR 407

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
                           + ++ ++ F++ VSHE+RTPL  I  + E + + +   L +   
Sbjct: 408 --------------EVELNAAQNRFISNVSHELRTPLFNIKSYVETLHDLK-DQLSDEEQ 452

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
           IE+    +   + +  +VND+LD+S++ESGK+ +  E + +  A+ + +   +L A EK 
Sbjct: 453 IEFLGIANSETDRLTRLVNDVLDLSRLESGKI-VQLEQIDIKPAIEQTLRNYRLNATEKN 511

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-------- 735
           + +       IP IL +   + Q+  N+L N + F+P    +II      +         
Sbjct: 512 VSLAHEIEETIPPILGNFDLLLQVFDNLLGNGLKFSPKNSSLIIRAYTWPDSCPAFPPNI 571

Query: 736 ---------------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
                          +V + + DTG G++  + EK    F ++ NS     +GTGLGL +
Sbjct: 572 KNNAAPQCELVSPLPKVRIEIADTGSGISQADQEKIFDRFYRVENSV-HTEQGTGLGLSI 630

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
            + +++ + G+  + S    GT       L  + 
Sbjct: 631 VRGIIEKHGGEIRMASELGVGTTFWFDLSLAQSD 664


>gi|83309719|ref|YP_419983.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82944560|dbj|BAE49424.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 796

 Score =  297 bits (761), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 88/634 (13%), Positives = 208/634 (32%), Gaps = 57/634 (8%)

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSP--PPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
               L    +    V  +  +++  Q+                    A    + + E+  
Sbjct: 64  LAGALESESRAVLVVASDGAELYRNQAARRLLGGAADPLAPLKALAAADDRALAEMERLD 123

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
              +  +    +    +    +           +    ++         ++         
Sbjct: 124 AAAAVGAPRRTEVTLVSAGGGREWLTLEVRPAGSPQAVAWIAEDVSARRAIDETLRRENE 183

Query: 321 LTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
           L  + VD  P+  +     G + Y N            + +     L+ +      +   
Sbjct: 184 LLSDFVDLLPVGCYSADADGTVRYVNQRLAEWLGKAGDEILGRN--LAEVF-GIVPNPEE 240

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
               + L                             +     ++  E   ++ +  + V 
Sbjct: 241 ERAELRLRGRSGEVF------------------QALVAHSVFDEGGEMFTRSVVVRDLVP 282

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
            +  ++ +     +   + +    GIA+++ +G + + N A+  + G   +D++ +P   
Sbjct: 283 EQQWEKALRAAERRFRWLFDDAPVGIALVDLDGAVGACNLALQAMLGIDRDDMIGRPVID 342

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTM 558
            + +      +  L ++++     T         +   +  L +         S   +  
Sbjct: 343 VVAEENRPAASEQLGKVIAGSTPGT-HLEVRLKGRRNLIAQLFVSPSHEDGDISGLVIHF 401

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            D +E +  + + + ++K+              V+H+    LTA+IGF +++  +     
Sbjct: 402 IDATEQRNLEMQFAQSQKM-----QAMGQLAGGVAHDFNNLLTAMIGFCDLLLQRHGA-- 454

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
           G+P + +    + ++ N    +V  LL  S+ ++    L    +++ +A++E  +L++  
Sbjct: 455 GDPSFADIMQ-VKQNANRAASLVRQLLAFSRRQA----LQPRLLNVTDALAELSNLLR-R 508

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT-------- 730
              + I +R      +  +  D     Q+ +N+  NA    P GG + I T         
Sbjct: 509 LLGETIELRMIHGRALGLVRVDPGQFDQVIINLAVNARDAMPGGGALTIRTNAVHVDQPI 568

Query: 731 ------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
                   + + V + V DTG G+    L +  +PF     S +  G GTGLGL     +
Sbjct: 569 QRGPELMPAGDYVQIEVADTGTGIGKENLARIFEPFF----STKEVGAGTGLGLSTVYGI 624

Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
           V    G  ++ S P +G    I  P  D     +
Sbjct: 625 VRQTDGFIFVESEPGQGATFSIYLPRIDADPAAE 658



 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/305 (10%), Positives = 85/305 (27%), Gaps = 25/305 (8%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK 146
           ++ DA G ++ +++ L + +G    +++G  L +V   +  +P     +L          
Sbjct: 197 YSADADGTVRYVNQRLAEWLGKAGDEILGRNLAEV-FGIVPNPEEERAEL---------- 245

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                + G +  V   L A  ++    E   F    +V     +       +  +++F  
Sbjct: 246 ----RLRGRSGEVFQALVAHSVFDEGGEM--FTRSVVVRDLVPEQQWEKALRAAERRFRW 299

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSP--PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
           L +      ++      + +            ++ +          ++        L   
Sbjct: 300 LFDDAPVGIALVDLDGAVGACNLALQAMLGIDRDDMIGRPVIDVVAEENRPAASEQLGKV 359

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
              S P       +   +    Q F +  +   +    + H    +     +     + +
Sbjct: 360 IAGSTPGTHLEVRLKGRRNLIAQLFVSPSHEDGDISGLVIHFIDATEQRNLEMQFAQSQK 419

Query: 325 TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
                 +       G     N     +  +  +  ++  G              NA +  
Sbjct: 420 MQAMGQLA-----GGVAHDFNNLLTAMIGFCDL-LLQRHGAGDPSFADIMQVKQNANRAA 473

Query: 385 MLYRS 389
            L R 
Sbjct: 474 SLVRQ 478



 Score = 48.9 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/363 (8%), Positives = 82/363 (22%), Gaps = 23/363 (6%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151
            G     ++   + +G  A  +  ++    +D   +     +            + TL  
Sbjct: 81  DGAELYRNQAARRLLGGAADPLAPLKALAAADDRALAEMERLDAAAAVGAPRRTEVTLVS 140

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
             G   ++ +++   P  S            I              +R ++  S   ++ 
Sbjct: 141 AGGGREWLTLEV--RPAGSPQAVAW------IAEDVSARRAIDETLRRENELLSDFVDLL 192

Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271
                       +          R+   +    +    ++        P    E + L  
Sbjct: 193 PVGCYSADADGTVRYVNQ-----RLAEWLGKAGDEILGRNLAEVFGIVPNPEEERAELRL 247

Query: 272 QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI 331
           +     +          F         S                   E       D  P+
Sbjct: 248 RGRSGEVFQAL-VAHSVFDEGGEMFTRSVVVRDLVPEQQWEKALRAAERRFRWLFDDAPV 306

Query: 332 PF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390
               V   G +   N +   +      D I     +  + +  + + +  +  V+   + 
Sbjct: 307 GIALVDLDGAVGACNLALQAMLGIDRDDMI-GRPVIDVVAEENRPAASEQLGKVIAGSTP 365

Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450
            T +         +     +L               +              +  +  + +
Sbjct: 366 GTHLEV-------RLKGRRNLIAQLFVSPSHEDGDISGLVIHFIDATEQRNLEMQFAQSQ 418

Query: 451 VMQ 453
            MQ
Sbjct: 419 KMQ 421


>gi|89212829|gb|ABD63915.1| kinase sensor ResE [Bacillus cereus]
          Length = 591

 Score =  297 bits (761), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 79/371 (21%), Positives = 152/371 (40%), Gaps = 39/371 (10%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            ++ E  QL SIL + +DG+  +N+EG ++  N           E+       + L +  
Sbjct: 249 ALQQEKEQLASILSSMADGVITLNQEGEVVVINPPAEHFLQVWQEEK-----EIELSKKL 303

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
           PS +      ++  + +Q +E        +   + L   +            + D++E +
Sbjct: 304 PSELVELFHLVVESEQQQVVEINLQ----KGNYVVLMTPLYNQTKIRGAVAVLRDMTEER 359

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + +                + DF+A VSHE+RTP+  + G+SE I +            E
Sbjct: 360 RLE--------------KMRQDFIANVSHELRTPMVMLQGYSEAILDDIVQT--KEEIDE 403

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           +   I      +  +VN+LLD++++ESG + LH   V +   V +     Q  A +K + 
Sbjct: 404 FVQIIYDESVRLGKLVNELLDLARMESGHVELHIGEVDIHPFVEKIGRKFQGIAKDKEVA 463

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +   F   I +       ++Q+  N++ NAI  T +GG + +     +N  +I  V+D+G
Sbjct: 464 LTVDFKGPIEQYPFGADRMEQVLTNLIDNAIRHTNAGGHVTLVIDMKNNG-LIFEVQDSG 522

Query: 746 VGMTNYELEKAMKPFGQIPNSQQI-------RGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
            G+   ++      F +   ++          G        +AK +V  + GK  + S  
Sbjct: 523 AGIPEEDIPFLFDRFYKADKARTRGKKGGTGLGL------AIAKNIVQGHDGKISVSSVV 576

Query: 799 AKGTLIEIIFP 809
            +GT   +  P
Sbjct: 577 GEGTTFSVYLP 587


>gi|312143399|ref|YP_003994845.1| multi-sensor signal transduction histidine kinase [Halanaerobium
           sp. 'sapolanicus']
 gi|311904050|gb|ADQ14491.1| multi-sensor signal transduction histidine kinase [Halanaerobium
           sp. 'sapolanicus']
          Length = 613

 Score =  297 bits (761), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 86/373 (23%), Positives = 164/373 (43%), Gaps = 26/373 (6%)

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
            ++N +K+ IE  +  +++   S  + + + E  I+  N    +LF     D++   F  
Sbjct: 258 EKLNVKKLLIEKEKSEAVVNNLSSPLIVTDIEHKIVLINETARELFSLK-NDVVGTHFLK 316

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL-LSLRIIIKKLPFSSCYSLTM 558
            ++             I + + ++    I   + K+    +S + +I +          +
Sbjct: 317 VIKAE------EIFEHIKNPEAKEEKTFILKKNDKKRHYRISTKQVIDEDEEYQFTVTLL 370

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            DI+  K+                + KS+F++ VSHE RTPLT++     ++ N+  G L
Sbjct: 371 EDITRLKEI--------------DNMKSEFVSTVSHEFRTPLTSMNMGLSMVINEDTGEL 416

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
            N    E           + ++VNDLLD+SKIESGK+ + F+ V +++ + + ++     
Sbjct: 417 -NEEQHELLEAAYEDVERLTELVNDLLDLSKIESGKIEMEFDKVDVNDIIEKTLNPFFKQ 475

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738
           A EK I ++   +       AD   +  +  N++ NA+ +   G +I +         V+
Sbjct: 476 AEEKDIELKFKQSEENVFAYADPSKISWVISNLIGNALRYAEQG-KIEVDAEIK-GRRVL 533

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           + V D G G+      K  + F +  N Q  +  GTGLGL +AK ++ A+ G+ +  S  
Sbjct: 534 VSVADNGPGIPKEYQAKIFEKFVRTGNDQDEKS-GTGLGLAIAKEIITAHNGRIWFDSEE 592

Query: 799 AKGTLIEIIFPLY 811
            +G+      P Y
Sbjct: 593 GEGSTFSFYIPRY 605


>gi|284036668|ref|YP_003386598.1| histidine kinase [Spirosoma linguale DSM 74]
 gi|283815961|gb|ADB37799.1| histidine kinase [Spirosoma linguale DSM 74]
          Length = 1407

 Score =  297 bits (761), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 83/298 (27%), Positives = 143/298 (47%), Gaps = 18/298 (6%)

Query: 516  ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575
            + +    +T E        EE+ + L+I+ +KL              +    + +    +
Sbjct: 834  LQNQVQERTREVTKQKQELEEQAVHLQILNEKLEQQYGRLA------QQSVLEQQA---R 884

Query: 576  KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
              AE  +  KS FLA +SHEIRTPL  +IG + ++++       +    EYA+ I   G 
Sbjct: 885  LEAETANKAKSVFLATMSHEIRTPLNGVIGMTALLEDTPL----SEEQREYAHTIRSCGE 940

Query: 636  LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695
             +L ++ND+LD SKIESGKM L  +P+ L   + E + +    A +  + +       +P
Sbjct: 941  SLLGVINDILDFSKIESGKMELEQQPIELRSCLEEVLDMFAGKAGQTGLDLIYQIDPLVP 1000

Query: 696  R-ILADLRSVKQIALNILSNAIHFTPSG----GQIIISTTHTSNEEVILRVRDTGVGMTN 750
              IL D   ++QI +N++ NA+ FT  G    G  +++       E+   VRDTG+G+  
Sbjct: 1001 PQILGDSLRLRQILINLVGNAVKFTHQGEVMVGVQLVAVRPDQAVELAFTVRDTGIGIPG 1060

Query: 751  YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
             ++ +  K F Q+ +S   +  GTGLGL +++ +++   G   + S   KGT      
Sbjct: 1061 SKIGQLFKAFSQVDSSHSRQYGGTGLGLIISQRLIELMGGVIRVESEVGKGTAFRFTL 1118


>gi|226324999|ref|ZP_03800517.1| hypothetical protein COPCOM_02791 [Coprococcus comes ATCC 27758]
 gi|225206347|gb|EEG88701.1| hypothetical protein COPCOM_02791 [Coprococcus comes ATCC 27758]
          Length = 809

 Score =  297 bits (761), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 90/434 (20%), Positives = 175/434 (40%), Gaps = 35/434 (8%)

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRK---MEIEVMQLCSILEATS---DGIAI 467
                    +  ++        +  + ++   +   M  +   +  ++++     D   +
Sbjct: 370 WVRNVVIRGEIEDSEYAMIFLRDITEAKVESARHLQMAADNASMEQLIQSIVRLVDRFVV 429

Query: 468 IN-REGIILSTNRAVSKL---FGYPVEDILR-----KPFTVFLEQNTPSVMNHYLTEILS 518
            +         N     +    G+  +  ++     K        +     ++   ++ S
Sbjct: 430 CDLENDRYEFYNLNGQMIYKPLGFYHDFQMQVLEKYKTLEPLEAIDILIAPDNIRKKLKS 489

Query: 519 LDLRQTLEKITLGST--KEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKK 576
            +     E  +L     K    + L     KL       L   D+++ K+ + +   A K
Sbjct: 490 ENDIYKFEYCSLDEKTYKIASYIPLEWKNGKLEK---VLLASMDVTQEKKAEIESRQALK 546

Query: 577 IAEK----ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
            A +     +  K++FL+ +SH+IRTP+ AI+G + +            R IE  + I  
Sbjct: 547 EAYRSAENANRAKTEFLSNMSHDIRTPMNAIVGLTAIA---GANVESQDRVIECLSKITE 603

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
           S   +L ++N++LD+++IESGKM L  E  +L E V   I+L +   +E +        +
Sbjct: 604 SSRHLLGLINEVLDMARIESGKMTLAQEDFNLSELVDNLITLTKPVLDEHKHNFDIHINH 663

Query: 693 -NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-----VILRVRDTGV 746
                +  D   ++Q+ LN++SNAI +TP GG I  S     N           + D G+
Sbjct: 664 IEHEAVCGDSLRIQQVFLNLMSNAIKYTPDGGNITFSIEEKPNGFSELGCYEFTIEDNGI 723

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT--LI 804
           GM+    +    PF +  + +  R +GTGLG+ +++ +V+   G   + ST  KGT   +
Sbjct: 724 GMSPEFQKIMFDPFSRADDQRTTRVQGTGLGMAISRNIVNLMNGTIKVDSTLHKGTKITV 783

Query: 805 EIIFPLYDTSHPHD 818
            I   L +     D
Sbjct: 784 TIYLELQEQEKEQD 797


>gi|34496337|ref|NP_900552.1| sensor/response regulator hybrid protein [Chromobacterium violaceum
           ATCC 12472]
 gi|34330295|gb|AAQ58556.2| probable sensor/response regulator hybrid protein [Chromobacterium
           violaceum ATCC 12472]
          Length = 902

 Score =  297 bits (761), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 93/381 (24%), Positives = 160/381 (41%), Gaps = 15/381 (3%)

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
           + +       +        SI+     G+ +++  G I   NR    +FG      L   
Sbjct: 15  EAEIVRRTEALRQSEKLSQSIIAGAPVGVVVVDGAGAIKDINRTALAVFGVEAGAGLPAT 74

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLE---KITLGSTKEEKLLSLR--IIIKKLPFS 551
                       +   L+  L+      L       L    +     +   + +  +   
Sbjct: 75  LGGLARLEGDGPLPGALSRGLAGADLAALSGEFWELLLRRADGSATQVEAGLTVVDMSGE 134

Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
              +L + DIS  K ++ KL  A + AE  +  KSDFLA +SHEIRTP+ AIIG + +  
Sbjct: 135 RTGTLFIRDISNRKLQEGKLKQAMEEAESATRAKSDFLANMSHEIRTPMNAIIGLAHLAL 194

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
                   +P+  +Y   I  SG  +L I+ND+LD SKIE+GK++L      L+  +   
Sbjct: 195 RTGL----DPKQRDYLQKIHNSGKHLLGIINDILDFSKIEAGKLDLENAEFDLERVLDNL 250

Query: 672 ISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
            +L+   A  K + +       + R ++ D   + QI +N  +NA+ FT  G ++ +   
Sbjct: 251 AALLGEKAEAKGLELIFDIGPGLDRSLIGDPLRLGQILINYANNAVKFTERG-EVTVRAR 309

Query: 731 HTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
                     +   V DTG+G++  +  K  + F Q   S   +  GTGLGL +++ + +
Sbjct: 310 CREERGDSLLLHFEVSDTGIGLSAEQKAKLFQSFQQADTSTSRKYGGTGLGLAISRKLAE 369

Query: 787 ANMGKFYIFSTPAKGTLIEII 807
              G+  + S P KG+     
Sbjct: 370 MMGGEVGVDSEPGKGSTFWFT 390


>gi|313110985|ref|ZP_07796825.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           39016]
 gi|310883327|gb|EFQ41921.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           39016]
          Length = 650

 Score =  297 bits (761), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 86/523 (16%), Positives = 180/523 (34%), Gaps = 38/523 (7%)

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364
               P +         L  E VD   I   + S G +   +     L  + + + +    
Sbjct: 3   TTRKPKVPLNQATRNRLLDEAVDDYAIH-TLDSAGRIASWSAGAARLFGHDASEILGR-- 59

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
             +              + +    ++            ++ N +   A   I     +  
Sbjct: 60  DYACFHTRKDRDAGVPQQALRQADAEGR---FETEGWRVRSNGKRFWAQVVIDAI-RDSQ 115

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSK 483
            + +    +  +  + R  K  +     Q   ++++ +D  I +++  G I + N    +
Sbjct: 116 GQLLGFAQLIHDLSEGRAAKEALRRSQEQFRLLVQSVTDYAIYMLDHRGRITNWNLGAQR 175

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           + GY  E+++ + F+ F               + + +     EK      K+       +
Sbjct: 176 IKGYLPEEVIGRHFSCFYTPEDREAGEPA-RGLAAAEREGRFEKEGWRVRKDGSRFWANV 234

Query: 544 IIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSH--KSDFLARVSHEIR 597
           +I  +  S    +       DI+   + + +L  A++   +             V+H+  
Sbjct: 235 VIDPIRDSDGRLIGFAKVTRDITHRIEAERELERARQELFQAQKMESLGHLTGGVAHDFN 294

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
             LT IIG   ++K +  G   + R  +       +     ++   +L  ++    K  L
Sbjct: 295 NLLTVIIGSLGLLKKRLPG---DQRTADLLQNALEAAQRGANLTQRMLSFAR----KQRL 347

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
             +P ++ + +     L+        + I T F  ++   L D   ++   +N+ +NA  
Sbjct: 348 DPQPCAIPDLLRGMTDLLIHSL-GPSVSIETRFPLDLDLGLTDANQLELSIINLATNARD 406

Query: 718 FTPSGGQIIIST-----------THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
             P+GG+I+ S                   + L + DTG GM    L +A++PF      
Sbjct: 407 AMPNGGRIVFSASNQRVPADNPHRLAPGNYICLSISDTGSGMDEETLRRAVEPFYTTKG- 465

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
               G GTGLGL +   + +   G+  + S P  GT   I  P
Sbjct: 466 ---IGRGTGLGLSIVDGLAEQLGGRLTLESQPGVGTTANIWIP 505



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/244 (10%), Positives = 73/244 (29%), Gaps = 8/244 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D+ G +   S    +  G+ A +++G            D       L +       +T 
Sbjct: 32  LDSAGRIASWSAGAARLFGHDASEILGRDYACFHTRKDRDAGVPQQALRQADAEGRFETE 91

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
            W +          +    I     +  GF    ++H        +   +R  ++F  L 
Sbjct: 92  GWRVRSNGKRFWAQVVIDAIRDSQGQLLGFAQ--LIHDLSEGRAAKEALRRSQEQFRLLV 149

Query: 209 EIKKGHSS-VEKEKYDIFSQQSPPPHLR--MKNKVSS--LTEYYAHKDDVLKTEKYPLLT 263
           +    ++  +   +  I +       ++  +  +V     + +Y  +D         L  
Sbjct: 150 QSVTDYAIYMLDHRGRITNWNLGAQRIKGYLPEEVIGRHFSCFYTPEDREAGEPARGLAA 209

Query: 264 SEESSLPEQEDFH-TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
           +E     E+E +    + +++        ++++      +       +     +      
Sbjct: 210 AEREGRFEKEGWRVRKDGSRFWANVVIDPIRDSDGRLIGFAKVTRDITHRIEAERELERA 269

Query: 323 PETV 326
            + +
Sbjct: 270 RQEL 273



 Score = 68.5 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 24/239 (10%), Positives = 50/239 (20%), Gaps = 5/239 (2%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + +D  G +   +    +  G    ++IG            +       L   +     
Sbjct: 157 IYMLDHRGRITNWNLGAQRIKGYLPEEVIGRHFSCFYTPEDREAGEPARGLAAAEREGRF 216

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +   W +         ++   PI   +    GF       V R         + L++   
Sbjct: 217 EKEGWRVRKDGSRFWANVVIDPIRDSDGRLIGF-----AKVTRDITHRIEAERELERARQ 271

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
            L + +K  S             +    +     +         +   L           
Sbjct: 272 ELFQAQKMESLGHLTGGVAHDFNNLLTVIIGSLGLLKKRLPGDQRTADLLQNALEAAQRG 331

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
            +       F                L+  +      L            D    LT  
Sbjct: 332 ANLTQRMLSFARKQRLDPQPCAIPDLLRGMTDLLIHSLGPSVSIETRFPLDLDLGLTDA 390


>gi|46580817|ref|YP_011625.1| sensory box histidine kinase [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46450237|gb|AAS96885.1| sensory box histidine kinase [Desulfovibrio vulgaris str.
           Hildenborough]
          Length = 1035

 Score =  297 bits (761), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 116/724 (16%), Positives = 208/724 (28%), Gaps = 85/724 (11%)

Query: 178 FRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK 237
             G   V   R          RL +  +       G +        I      P      
Sbjct: 39  AAGSAEVQALRERIARLEDENRLLRLCARFEGPAPGEALGSLLPEIIAPASDAPLVYAYV 98

Query: 238 NKVSSLTEYYAHKDDVLKTEKY------PLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291
           + + +    + ++   +    +       LL   ++  P           +      +  
Sbjct: 99  SDMQTHELLFVNRSLTMAVGAWQGRKCYELLQGRDTPCPFCTSGRLQRNPERPVVWEWRN 158

Query: 292 LQNNS------------KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-- 337
            +                            +      E        +D      F+    
Sbjct: 159 PRLGRWFRCIDRCIHWPDGRPVRYELAVDITDMREAQEDLLRFRAALDASAEAIFLVDLE 218

Query: 338 HGNLFYANPSFLLLTKYKSVDDIE----------IAGGLSTLLDAPKLSDNNAIKPVMLY 387
            G     N     +  Y     +            A G   +LD+            +  
Sbjct: 219 EGRFLDVNSGACTMLGYDRDTLLGLGLCGIRRSMAADGCRQILDSIAAGAVLENVETVYL 278

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
             D T +        +       LA+         +      +     E V +   +  +
Sbjct: 279 HRDGTFVPVEVGARLVDRVGGPRLAIMVARDVSEKRKARRAMEVRYLYEHVLSSCARELL 338

Query: 448 EIE--VMQLCSILEATSDGIAII---------NREGII---------------LSTNRAV 481
                   L  +L A   G             + EG +                  N A+
Sbjct: 339 SRSCSESTLVGVLGALRQGAGACRAYIFENYEDAEGRLCCSQRYESSAPGVRPELDNPAL 398

Query: 482 SKLFGYP--VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
             +         +        +              + +  +R  L             +
Sbjct: 399 QNIIYASEAPNWLHELRKGRAVVGPVADQPLPERDVLQAQGIRSLLVLPIFARGVWCGFV 458

Query: 540 SLRIIIKKLPFSSCYSLTMHDISE-------WKQEKNKLSHAKKIAEKESSHKSDFLARV 592
                  +  +     L +   SE         + + +L+ + + AE+ S  KS FLA +
Sbjct: 459 GFDDTRTERTWQGGDILFLQTASEILGAALERHRAEAELAASHQRAEEASRAKSVFLANM 518

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHEIRTPL AIIG +E+   +              +    S   +L +VNDLLD+S++ES
Sbjct: 519 SHEIRTPLNAIIGLTELTLQEPISQGVGENLRGVLH----SAEALLAVVNDLLDLSRVES 574

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNI 711
           G+++L     S        + L+   A+ K +      A ++P  +  D   ++Q+ LN+
Sbjct: 575 GRLHLESVEFSPSRLARGVVRLMTHVADRKGLDFELYIARDVPPTVTGDPARLRQVLLNL 634

Query: 712 LSNAIHFTPSGG---QIIISTTHTSN------------EEVILRVRDTGVGMTNYELEKA 756
           + NA+ FT  GG    +      T                +   V DTG+G+        
Sbjct: 635 VGNALKFTDEGGVSLTVTPCICSTDTGGGILKGGNGGVRGLRFTVTDTGIGIPPDRQACI 694

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
            + F Q   S   R  GTGLGL +++ +V+   G+  + S P KG+      P       
Sbjct: 695 FESFVQADESTARRFGGTGLGLAISRRLVEMMGGRLELRSEPGKGSEFWCDVPFASEGAA 754

Query: 817 HDCI 820
            D I
Sbjct: 755 RDGI 758



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/353 (9%), Positives = 85/353 (24%), Gaps = 14/353 (3%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG-KTTLW 150
            G   +++      +G     ++G+ LC +   +  D    I D +         +T   
Sbjct: 219 EGRFLDVNSGACTMLGYDRDTLLGLGLCGIRRSMAADGCRQILDSIAAGAVLENVETVYL 278

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
             +GT  +VP+++ A  +   +R         +          R   +        L   
Sbjct: 279 HRDGT--FVPVEVGARLV---DRVGGPRLAIMVARDVSEKRKARRAMEVRYLYEHVLSSC 333

Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270
            +   S    +  +              +      Y   +  +  +++Y           
Sbjct: 334 ARELLSRSCSESTLVGVLGALRQGAGACRAYIFENYEDAEGRLCCSQRYESSAPGVRPEL 393

Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330
           +      I              +  +              +         L      +  
Sbjct: 394 DNPALQNIIYASEAPNWLHELRKGRAVVGPVADQPLPERDVLQAQGIRSLLVLPIFAR-- 451

Query: 331 IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390
              +    G + + +       +   +  ++ A  +  L  A +     A       R++
Sbjct: 452 -GVW---CGFVGFDDTRTERTWQGGDILFLQTASEI--LGAALERHRAEAELAASHQRAE 505

Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
               A S  L  +       L       E   Q P +          + +   
Sbjct: 506 EASRAKSVFLANMSHEIRTPLNAIIGLTELTLQEPISQGVGENLRGVLHSAEA 558


>gi|223939961|ref|ZP_03631828.1| PAS/PAC sensor signal transduction histidine kinase [bacterium
           Ellin514]
 gi|223891375|gb|EEF57869.1| PAS/PAC sensor signal transduction histidine kinase [bacterium
           Ellin514]
          Length = 774

 Score =  297 bits (761), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 108/757 (14%), Positives = 253/757 (33%), Gaps = 55/757 (7%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP--NNHIGDLLKR-QNTWY 144
            +D       ++  +   +G      +G  + ++     +      H+ D+    + + +
Sbjct: 35  RLDPEFRHLYVNPAIETLLGIPLSSSLGKTVAEMGLPHELLTLWETHLKDVFADHRQSHF 94

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
                   +  + +  +    +P +S +          I+  +          +  ++ F
Sbjct: 95  DFQLESHSQTHSFHNRL----IPEFSPSGTVDSV--LEIISDHTRCKRLDTSLQEQEELF 148

Query: 205 SHLH-EIKKGHSSVEKEKYDIFSQQSPPPHLRM--KNKVSSLTEYYAHKDDVLKTE--KY 259
             +   I++    +  +   I S       +     ++V          D+ ++      
Sbjct: 149 RLMVTHIQECAMILLDQDGRISSWNIGAERILNHKTSEVWKSNYSCFFSDEDIRWNKPAQ 208

Query: 260 PLLTSEESSLPEQEDFH-TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
            L  + E    + E +    + +++  +     L+++  E   +       +    F+E 
Sbjct: 209 ELSFAREKGRTQTEVWLKRKDGSRFLAEMVITLLKSDQGEMKGFSLIIRDITEHKRFEEQ 268

Query: 319 ENLTPETVDKC----PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
                  ++      P    + +   + Y N  F  + K+ +      +  ++       
Sbjct: 269 VQYQRALLEALSETSPDGILISTEQKILYFNHRFREIWKFPNYIIDSRSNHVALEWAVSC 328

Query: 375 LSDNNA-IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
           + D  A  + V     D               +      +            +   +   
Sbjct: 329 IRDPEAFSQRVAQAYKDP---DMRVHDEICLKDGRT---LEHYGLPVHGNGGQYYGRVWF 382

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
             +   ++     +E    +   + E++   I  ++ EG  +  N     L G    +  
Sbjct: 383 FRDITSSKAAMDALEESEERFRVLAESSPMAIFHMDAEGRAVYVNPVWENLTGLKPMESF 442

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL--RIIIKKLPFS 551
              +T  +       +     E L    +   E   LG       + +    I+      
Sbjct: 443 GHGWTRAIYPPDLEEVMIGWKEALKKREKWCHEHRLLGRDGRIHWVRVLSSCILSPAHEV 502

Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIA------------EKESSHKSDF------LARVS 593
             Y  T+ DISE K+ +  L  AK+              ++    K         L  V+
Sbjct: 503 VGYVATVEDISERKETEAILLKAKENLECYTHELEERVEDRTVELKQTLHTMENCLYSVA 562

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           H+ + PL AI GF+  +    +  L + +  E AN + R+   +  +++D L+    E  
Sbjct: 563 HDFKAPLRAIDGFTTTLVED-YARLFDEKGRELANEVVRATKRMDALISDFLEYG--ELA 619

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713
            M++H  P+ ++  +S A + ++   +     I  S    + R+L +   + ++++ I++
Sbjct: 620 YMDVHCSPLDVEPCISAATAWLKSQVSANNARITLSRP--MGRVLGNQDLLTKVSIQIIA 677

Query: 714 NAIHFTPSGGQIIISTTHT-SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           NA+ F   G Q  I       N+ V +  +D G+G+     +K    F ++         
Sbjct: 678 NALKFVAPGVQPAIHIWTEFVNDHVRINFQDNGIGIEPEFHDKIFGIFNRLHG---KEIP 734

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GTG+GL + K  ++   G   + S   +GT + I  P
Sbjct: 735 GTGIGLAIVKKAMERMNGIVGVASRSQQGTTLWIELP 771



 Score = 70.4 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 50/160 (31%), Gaps = 7/160 (4%)

Query: 69  DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID 128
           +SE  F        +   +++DA G    ++       G    +  G           ++
Sbjct: 398 ESEERFRVLAESSPMA-IFHMDAEGRAVYVNPVWENLTGLKPMESFGHGWTRAIYPPDLE 456

Query: 129 PNNHIG-DLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187
                  + LK++  W  +  L   +G   +V +  +   I S   E  G+     V   
Sbjct: 457 EVMIGWKEALKKREKWCHEHRLLGRDGRIHWVRVLSSC--ILSPAHEVVGY--VATVEDI 512

Query: 188 RVDNDPRA-LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFS 226
               +  A L K  +    + HE+++       E      
Sbjct: 513 SERKETEAILLKAKENLECYTHELEERVEDRTVELKQTLH 552



 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 46/136 (33%), Gaps = 2/136 (1%)

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF-LEQNTPSVMNHY 512
             S+LE + D IA ++ E   L  N A+  L G P+   L K      L     ++   +
Sbjct: 22  FRSLLEHSPDVIARLDPEFRHLYVNPAIETLLGIPLSSSLGKTVAEMGLPHELLTLWETH 81

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLL-SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571
           L ++ +   +   +      ++       L                + D +  K+    L
Sbjct: 82  LKDVFADHRQSHFDFQLESHSQTHSFHNRLIPEFSPSGTVDSVLEIISDHTRCKRLDTSL 141

Query: 572 SHAKKIAEKESSHKSD 587
              +++     +H  +
Sbjct: 142 QEQEELFRLMVTHIQE 157


>gi|331671946|ref|ZP_08372742.1| phosphate regulon sensor kinase PhoR [Escherichia coli TA280]
 gi|331070935|gb|EGI42294.1| phosphate regulon sensor kinase PhoR [Escherichia coli TA280]
          Length = 431

 Score =  297 bits (761), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 73/427 (17%), Positives = 151/427 (35%), Gaps = 37/427 (8%)

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             +L       I     L  + W     L +         +        G+    +  + 
Sbjct: 33  WFLLASVTGLLIWHFWNLLRLSW----WLWVDRSMTPPPGRGSWEPLLYGLHQMQLRNKK 88

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            +R++   + +  S  E+  D + +   EG I   N    ++ G    +   +     L 
Sbjct: 89  RRRELGNLIKRFRSGAESLPDAVVLTTEEGGIFWCNGLAQQILGLRWPEDNGQNILNLLR 148

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
               +               +   +         + L +R++           +   D++
Sbjct: 149 YPEFTQYL----------KTRDFSRPLNLVLNTGRHLEIRVMPYTHKQ---LLMVARDVT 195

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  Q +                + +F A VSHE+RTPLT + G+ E++  Q        +
Sbjct: 196 QMHQLEG--------------ARRNFFANVSHELRTPLTVLQGYLEMMDEQPLEGAVREK 241

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                + +      +  +V  LL +SKIE+   +L  E V +   +       Q  + +K
Sbjct: 242 A---LHTMREQTQRMEGLVKQLLMLSKIEAAPTHLLNEKVDVPMMLRVVEREAQTLSQKK 298

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           +        N + ++  +   ++    N++ NA++ TP G  I +      +      V 
Sbjct: 299 Q-TFTFEIDNGL-KVSGNEDQLRSAISNLVYNAVNHTPEGTHITVRWQRVPHG-AEFSVE 355

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G G+    + +  + F ++  ++  +  G+GLGL + K  V+ +  +  I ST  KGT
Sbjct: 356 DNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHAVNHHESRLNIESTVGKGT 415

Query: 803 LIEIIFP 809
               + P
Sbjct: 416 RFSFVIP 422


>gi|220908403|ref|YP_002483714.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219865014|gb|ACL45353.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 653

 Score =  297 bits (761), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 88/382 (23%), Positives = 159/382 (41%), Gaps = 29/382 (7%)

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF-LEQNT 505
           ++    +  +++E T D IA  + +   L TN A  +  G P+ D   KP          
Sbjct: 148 LQQREREFRTLVEHTPDIIARYDPQLRCLYTNPASIRQLGVPIGDYGGKPLAELGYPPAM 207

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISE 563
              + + L  + +    +  E        + K   + ++ +               DI++
Sbjct: 208 TQFLENALKNVFTTGQIRVDELRMKYRE-DWKTHQVYVVPEFRDDGSIESVLTIARDITQ 266

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            ++ +         AE  +  K +FLA +SHE+RTPL AI+G++++++ + F      + 
Sbjct: 267 LRRTEAAF----AEAETTNRMKDEFLATLSHELRTPLNAILGWAKLLQTRSFTV---EQT 319

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
                 I+R+      +V DLLD+S++  G++ L   PV L + ++ AI  V+L A  K 
Sbjct: 320 RTALETIERNAQQQTQLVADLLDVSQMMRGQLTLSMAPVLLSDPLAAAIETVRLAAVAKN 379

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
           I + T     +  +  D   ++Q+  N+L+NA+ FTP GG+I +      N+E  + V D
Sbjct: 380 IELETEIDPEVGYVRGDAARLQQLVWNLLTNAVKFTPKGGKISVQLERI-NQEAQITVSD 438

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRG--------EGTGLGLPLAKAMVDANMGKFYI- 794
           TG G+    L      F Q  +S                       + + +A+ G     
Sbjct: 439 TGKGIRPEFLPFVFDRFRQEDSSTTREYGGLGLGLAL--------VRQLAEAHGGTVTAG 490

Query: 795 FSTPAKGTLIEIIFPLYDTSHP 816
            S   +G    +  PL    HP
Sbjct: 491 SSGKGQGATFRVRLPLLPEPHP 512


>gi|146307980|ref|YP_001188445.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
           mendocina ymp]
 gi|145576181|gb|ABP85713.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
           mendocina ymp]
          Length = 914

 Score =  297 bits (761), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 83/260 (31%), Positives = 142/260 (54%), Gaps = 13/260 (5%)

Query: 567 EKNKLSHAKKIAEKE---SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            K +   +++ AE+    S  KS FLA++SHEIRTPL  ++G  ++++        +   
Sbjct: 387 LKEEGFQSRRAAEQAAFESQAKSRFLAKMSHEIRTPLNGVLGMLQLLRETPL----DRSQ 442

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
             Y + I  SG+ ++ ++ND+LD ++IESGK++L      L++ +SE +SL    A +KR
Sbjct: 443 RFYVDTISSSGSSLMAVINDILDYARIESGKLSLEQIEFDLEDMISETLSLFTGQALDKR 502

Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVI 738
           + +  S    +P RI  D   +KQ+ +N+LSNA+ FT  G  + +S +  S+      ++
Sbjct: 503 LRLYVSLEGGVPRRIQGDPTRLKQVLMNLLSNALKFTAEG-HVAVSVSRRSDSHGQPHLV 561

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
             V D+G+G++   L K  + F Q  +S   R  G+GLGL ++K +V+   G+  + STP
Sbjct: 562 FAVSDSGIGISEQALAKLFESFAQGDSSTTRRYGGSGLGLAISKELVEMMGGRIEVQSTP 621

Query: 799 AKGTLIEIIFPLYDTSHPHD 818
            +GT      PL +     D
Sbjct: 622 GQGTRFAFDIPLLEAPEAPD 641


>gi|330831800|ref|XP_003291944.1| hypothetical protein DICPUDRAFT_156601 [Dictyostelium purpureum]
 gi|325077858|gb|EGC31544.1| hypothetical protein DICPUDRAFT_156601 [Dictyostelium purpureum]
          Length = 1468

 Score =  297 bits (761), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 96/370 (25%), Positives = 166/370 (44%), Gaps = 26/370 (7%)

Query: 464  GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL--EQNTPSVMNHYLTEILSLDL 521
            G+     +GI+L  N  + +  GY   D+        L        +    L E+ S   
Sbjct: 747  GVMFSTFKGIVLDANDMLLQTIGYTRGDLEEGKIDWMLLTPPEYFEISARALQELKSKRW 806

Query: 522  RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH-DISEWKQEKNKLSHAKKIAEK 580
             Q +EK      K  K + + I    +  S+   +T   D+S ++Q +         A +
Sbjct: 807  CQPIEKAYT--HKSGKRVPVLITSAMIDGSTEQCITFVFDLSRYRQAE-------LAAIE 857

Query: 581  ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
             +  K+ F+  +SHE+RTP   I+G S+++ +    P       +  + I RS + ++ +
Sbjct: 858  ATRLKTQFITNISHELRTPCHGIVGMSQLLLDSNLTPT----QRDNVDSIKRSTDSLISL 913

Query: 641  VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN---IPRI 697
            +ND+LD SK+E GK+ L  E   L   + E +       N K I +  +   +    P I
Sbjct: 914  INDILDFSKLEYGKVTLENESFELLPMIEEVLESQTSVVNHKGIDLIFTMGRDYPVPPVI 973

Query: 698  LADLRSVKQIALNILSNAIHFTPSGGQI-IISTTHTSNEEV--ILRVRDTGVGMTNYELE 754
              D  S+K++ LN++ NA  FT SG  +  IST + S +++     V+D+G+G+   ++E
Sbjct: 974  FGDRNSLKKVLLNLVGNATKFTESGFVLLEISTDYVSGDQISLRFTVKDSGIGIPEDKIE 1033

Query: 755  KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS--TPAKGTLIEIIF--PL 810
            +   PFGQ+  S   +  G+GLGL   K +V    G   + S     KGT        P+
Sbjct: 1034 QIFIPFGQVDGSFSRKYGGSGLGLSFCKELVALMGGYIRVESGDQDGKGTTFWFSIKVPI 1093

Query: 811  YDTSHPHDCI 820
               S+  + +
Sbjct: 1094 SSPSYLPNSV 1103


>gi|320181619|gb|EFW56534.1| phosphate regulon sensor protein [Shigella boydii ATCC 9905]
          Length = 431

 Score =  297 bits (761), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 73/427 (17%), Positives = 151/427 (35%), Gaps = 37/427 (8%)

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             +L       I     L  + W     L +         +        G+    +  + 
Sbjct: 33  WFLLASVTGLLIWHFWNLLRLSW----WLWVDRSMTPPPGRGSWEPLLYGLHQMQLRNKK 88

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            +R++   + +  S  E+  D + +   EG I   N    ++ G    +   +     L 
Sbjct: 89  RRRELGNLIKRFRSGAESLPDAVVLTTEEGGIFWCNGLAQQILGLRWPEDNGQNILNLLR 148

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
               +               +   +         + L +R++           +   D++
Sbjct: 149 YPEFTQYL----------KTRDFSRPLNLVLNTGRHLEIRVMPYTHKQ---LLMVARDVT 195

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  Q +                + +F A VSHE+RTPLT + G+ E++  Q        +
Sbjct: 196 QMHQLEG--------------ARRNFFANVSHELRTPLTVLQGYLEMMDEQPLEGAVREK 241

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                + +      +  +V  LL +SKIE+   +L  E V +   +       Q  + +K
Sbjct: 242 A---LHTMREQTQRMEGLVKQLLTLSKIEAAPTHLLNEEVDVPMMLRVVEREAQTLSQKK 298

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           +        N + ++  +   ++    N++ NA++ TP G  I +      +      V 
Sbjct: 299 Q-TFTFEIDNGL-KVSGNEDQLRSAISNLVYNAVNHTPEGTHITVRWQRVPHG-AEFSVE 355

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G G+    + +  + F ++  ++  +  G+GLGL + K  V+ +  +  I ST  KGT
Sbjct: 356 DNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHAVNHHESRLNIESTVGKGT 415

Query: 803 LIEIIFP 809
               + P
Sbjct: 416 RFSFVIP 422


>gi|157413903|ref|YP_001484769.1| two-component sensor histidine kinase [Prochlorococcus marinus str.
           MIT 9215]
 gi|157388478|gb|ABV51183.1| two-component sensor histidine kinase [Prochlorococcus marinus str.
           MIT 9215]
          Length = 688

 Score =  297 bits (761), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 79/394 (20%), Positives = 177/394 (44%), Gaps = 41/394 (10%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            +++   ++  S++   +DG  +++ +G I+ TN    +LF +    +  K F   + + 
Sbjct: 288 EELKAAQIKQQSLIATMADGAILLDSQGKIVLTNPTAKRLFRWEGRFLEGKNFLNEIPEI 347

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEE-KLLSLRIIIKKLPFSSCYSLTMHDISE 563
             + ++  +  IL+ +  +   + +LG      +++   ++          ++T+ D++ 
Sbjct: 348 LSNDLHTNVESILNREKEKDDLRFSLGEPARTLRIVLQSVLDTNKVELKGIAVTIQDLTR 407

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
                           + ++ ++ F++ VSHE+RTPL  I  + E + + +   L +   
Sbjct: 408 --------------EVELNAAQNRFISNVSHELRTPLFNIKSYVETLHDLK-DQLSDEEQ 452

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
           IE+    +   + +  +VND+LD+S++ESGK+ +  + + +  A+ + +   +L A EK 
Sbjct: 453 IEFLGIANSETDRLTRLVNDVLDLSRLESGKI-VQLDQMDIKPAIEQTLRNYRLNATEKN 511

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST------------TH 731
           + +       IP IL +   + Q+  N+L N + F+P    +II              + 
Sbjct: 512 VTLAHDIEETIPLILGNFDLLLQVFDNLLGNGLKFSPKNSSLIIRAYTWPDSCPAFPPSI 571

Query: 732 TSNE-----------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
            ++            +V + + DTG G++  + EK    F ++ NS     +GTGLGL +
Sbjct: 572 KNDGAPQCELVSPLPKVRIEIADTGSGISQADQEKIFDRFYRVENSV-HTEQGTGLGLSI 630

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
            + +++ + G+  + S    GT       L  + 
Sbjct: 631 VRGIIEKHGGEIRMASELGVGTTFWFDLALAQSD 664


>gi|167031168|ref|YP_001666399.1| multi-sensor signal transduction histidine kinase [Pseudomonas
           putida GB-1]
 gi|166857656|gb|ABY96063.1| multi-sensor signal transduction histidine kinase [Pseudomonas
           putida GB-1]
          Length = 588

 Score =  297 bits (761), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 92/427 (21%), Positives = 174/427 (40%), Gaps = 28/427 (6%)

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK--R 445
            + R      A         + +  +T  P  +A +  +   + G+  + +         
Sbjct: 186 IARRFGQPIEALAKAADQLGKGNFDVTL-PVTQATELNQLTRRFGLMADALRKHQATNVD 244

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           ++     +L ++L++  DG+ II+R+G +   N    +  G+    +             
Sbjct: 245 ELLAGQQRLQAVLDSIDDGLLIIDRQGRLEHLNPVAQRQLGWSDSRVGSGLANALQRPEL 304

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISE 563
              +   L           L        +E +LL+  +     P        + +HD++E
Sbjct: 305 EQQLRQVLRGGSLDRQPDDLNIEV---DEETRLLTYSLTPVSHPQGPILGAVMVLHDVTE 361

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            +  +                +S+F+ R SHE+RTP+T  +  +  +  +R     + R 
Sbjct: 362 QRAFE--------------RVRSEFVLRASHELRTPVTG-MHMAFGLLRERVKFPPDARE 406

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            +    I      +  ++NDLL+ S+ +SG   L   P +LDE +  A       A +K+
Sbjct: 407 NDLLETIGEEMQRLTQLINDLLNFSRYQSGLQKLELAPCALDELLERAQLRFAEQAQQKQ 466

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
           I +       +PRI AD+  + ++  N+L NAI  T +GG+I +       E VI+ + D
Sbjct: 467 IELLKELEAPLPRIQADVAQLDRVLDNLLHNAIRHTANGGRIRLH-ARRHAERVIISIED 525

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
            G G+   +  +  +PF Q+      +  G GLGL L K +V  + G+  +FS P +GT 
Sbjct: 526 NGEGIAYGQQGRIFEPFVQV----GRKKGGAGLGLALCKEIVQLHGGRMGVFSRPGQGTQ 581

Query: 804 IEIIFPL 810
             +  P+
Sbjct: 582 FYMALPV 588



 Score = 43.1 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 22/241 (9%), Positives = 64/241 (26%), Gaps = 9/241 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G L+ ++    + +G    ++ G  L +      ++        + R  +   +  
Sbjct: 267 IDRQGRLEHLNPVAQRQLGWSDSRV-GSGLANALQRPELEQQ---LRQVLRGGSLDRQPD 322

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
              IE       +  +  P+        G     ++H          +  R +      H
Sbjct: 323 DLNIEVDEETRLLTYSLTPVSHPQGPILGA--VMVLHDVTEQRAFERV--RSEFVLRASH 378

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           E+ +   +     + +  ++   P    +N +         +   L  +       +   
Sbjct: 379 EL-RTPVTGMHMAFGLLRERVKFPPDARENDLLETIGEEMQRLTQLINDLLNFSRYQSGL 437

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
              +     ++      +  F       +           P + A   + + +    +  
Sbjct: 438 QKLELAPCALDELLERAQLRFAEQAQQKQIELLKELEAPLPRIQADVAQLDRVLDNLLHN 497

Query: 329 C 329
            
Sbjct: 498 A 498


>gi|156976578|ref|YP_001447484.1| histidine kinase [Vibrio harveyi ATCC BAA-1116]
 gi|1708886|sp|P54302|LUXQ_VIBHA RecName: Full=Autoinducer 2 sensor kinase/phosphatase luxQ
 gi|459205|gb|AAA20838.1| LuxQ [Vibrio harveyi]
 gi|156528172|gb|ABU73257.1| hypothetical protein VIBHAR_05352 [Vibrio harveyi ATCC BAA-1116]
          Length = 859

 Score =  297 bits (761), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 85/376 (22%), Positives = 164/376 (43%), Gaps = 23/376 (6%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            ++E +      +       I + + E +++  N A  K      +  +  P     ++ 
Sbjct: 351 EELEAQKKSFRDLFNFALSPIMVWSEESVLIQMNPAARKELVIEDDHEIMHPVFQGFKEK 410

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISE 563
               +           +   +           K+    +   ++    S   +   DI+ 
Sbjct: 411 LTPHLKMAAQGATLTGVNVPI---------GNKIYRWNLSPIRVDGDISGIIVQGQDITT 461

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + + + + A++ AEK +  ++DFLA++SHEIRTP+  I+G ++++K+     +     
Sbjct: 462 LIEAEKQSNIARREAEKSAQARADFLAKMSHEIRTPINGILGVAQLLKD----SVDTQEQ 517

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
               + +  SG  +L ++ND+LD SKIE GK N+   P S  + +    ++ +     K 
Sbjct: 518 KNQIDVLCHSGEHLLAVLNDILDFSKIEQGKFNIQKHPFSFTDTMRTLENIYRPICTNKG 577

Query: 684 IL--IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-----SNEE 736
           +   I      N+  I  D   + QI  N++SNA+ FTP G  I +           N  
Sbjct: 578 VELVIENELDPNV-EIFTDQVRLNQILFNLVSNAVKFTPIGS-IRLHAELEQFYGAENSV 635

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           +++ + DTG+G+ + +L++  +PF Q  ++      G+GLGL + K +VD   G   + S
Sbjct: 636 LVVELTDTGIGIESDKLDQMFEPFVQEESTTTREYGGSGLGLTIVKNLVDMLEGDVQVRS 695

Query: 797 TPAKGTLIEIIFPLYD 812
           +   GT   I  P+ D
Sbjct: 696 SKGGGTTFVITLPVKD 711


>gi|218887223|ref|YP_002436544.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218758177|gb|ACL09076.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 678

 Score =  297 bits (761), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 95/566 (16%), Positives = 198/566 (34%), Gaps = 43/566 (7%)

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
            L     + +    D H +  +    +    TL++++       +          F    
Sbjct: 75  ELSRRTGTRITYIVDGHVLADSDVPFE-RLSTLEDHANRPEVVEARTGALGTDVRFSATL 133

Query: 320 NLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
                   +          G L     +  L   +  +D +E     + L     L  + 
Sbjct: 134 GKDLIYAARKVDGIAGLDPGTLRL---ALPLSVVHDRLDRMEKGLVWAFLF---SLMASG 187

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
           A+  V+     R     +     I    +                P     NG+      
Sbjct: 188 ALGLVVTRPLLRGMETMAMAAQAI---GQGEYGRRIRDIPGRELRPLAHAINGMAHNIEQ 244

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
                 ++  +  +L ++     +G+ +++  G I S NRA++ +F      +   P   
Sbjct: 245 HL---HQLNEQKGRLEAVFNGMHEGVMVLDATGRIESMNRALTAMFAGIGNKLGATPLEA 301

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH 559
            ++     +++  L    +       +        E     + ++  +        L  H
Sbjct: 302 TMKPELQRMVDEMLVSPNARGTSMQTDL------GEGHAFEISLVPFRDASGQRMVLVFH 355

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           DISE ++ +                + DF+A VSHE++TPLT+I G++E +      P  
Sbjct: 356 DISEREKLE--------------RIRRDFVANVSHELKTPLTSIKGYAETLLE--APPSS 399

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
             +   +   I ++ N +  +VN LL +++ E     +    V   E + + +  ++  A
Sbjct: 400 RDQMAAFLRTILKNANHMTKMVNSLLVLARSEHKGDKVALTGVDAAEVLRQTVRELEPVA 459

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
             K I++          +LAD   + ++  N+L NAI ++P   ++ +S T      V L
Sbjct: 460 TRKDIVLENGVGAGPLVVLADRDGLVEVFRNLLDNAIKYSPPQTRVAVSATAAD-GRVTL 518

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT-GLGLPLAKAMVDANMGKFYIFSTP 798
            V D G G+     E+  + F ++         G+ GLGL + + +V ++ G  ++ S  
Sbjct: 519 CVSDQGPGIPEKSRERIFERFYRLDRDGDGTKNGSAGLGLAICRRIVMSHGGDIWVESPL 578

Query: 799 AK----GTLIEIIF--PLYDTSHPHD 818
                 G    ++   P  +   P +
Sbjct: 579 DAATRTGAAFFVMLFSPRPEDEGPDE 604



 Score = 39.6 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 33/365 (9%), Positives = 76/365 (20%), Gaps = 20/365 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +DA G ++ ++  L           IG +L   +  L       +  ++           
Sbjct: 270 LDATGRIESMNRALTAMF-----AGIGNKLG--ATPLEATMKPELQRMVDEMLVSPNARG 322

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                        +++ +P    + +    R   + H          + +      SH  
Sbjct: 323 TSMQTDLGEGHAFEISLVPFRDASGQ----RMVLVFHDISEREKLERIRRDFVANVSHEL 378

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           +          E        S          +     +     + L          ++ +
Sbjct: 379 KTPLTSIKGYAETLLEAPPSSRDQMAAFLRTILKNANHMTKMVNSLLVLARSEHKGDKVA 438

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
           L   +    +       +          +                  +   NL    +  
Sbjct: 439 LTGVDAAEVLRQTVRELEPVATRKDIVLENGVGAGPLVVLADRDGLVEVFRNLLDNAIKY 498

Query: 329 CP----IPF-FVYSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
            P    +      + G +    +     + +       E    L    D  K        
Sbjct: 499 SPPQTRVAVSATAADGRVTLCVSDQGPGIPEKSRERIFERFYRLDRDGDGTKNGSAGLGL 558

Query: 383 PVMLYR--SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE-NMPQNGIEPEDVD 439
            +      S    I   + L            M F P  +     E          +  D
Sbjct: 559 AICRRIVMSHGGDIWVESPLDAATRTGAAFFVMLFSPRPEDEGPDENGAGLEDGGADGTD 618

Query: 440 TRINK 444
               +
Sbjct: 619 ADDAE 623


>gi|171915289|ref|ZP_02930759.1| signal transduction histidine kinase [Verrucomicrobium spinosum DSM
           4136]
          Length = 765

 Score =  297 bits (761), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 118/600 (19%), Positives = 223/600 (37%), Gaps = 45/600 (7%)

Query: 233 HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL 292
            LR K +   L        +    E    L  E         F T  L   +   + G +
Sbjct: 20  ELRSKYEALQLRVTRFSVVEQRLVEAQHQLDEELGRFRRIAAFSTAALQARSDVAFAGVV 79

Query: 293 QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLT 352
                + FE         +    D+   L P      P+       G    A+ + L   
Sbjct: 80  AEALVDVFE-----QEYGIHWPVDDAGRLAPG-----PLAV---EGGVYDRASLTMLRPW 126

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
                +++ +   + +           A   ++L             L T      +   
Sbjct: 127 LADRFEEVGVETTVFSPEALASQPKGMAFGQLVLGTCLDHGGKPVCLLLTGTSKGRSPFH 186

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI---EVMQLCSILEATSDGIAIIN 469
                               +E    + ++   ++E       QL   ++ +  G+   +
Sbjct: 187 TPMEAGRCEPFEVFVQKVAELEVNRRNHKVIAAQVERIRKSEEQLKLAIDGSKVGLWDWD 246

Query: 470 REGIILSTNRAVSKLFGYPVEDILRKP--FTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
                +S +     + GY  ED+   P  +   L        N  +   L     +  E 
Sbjct: 247 LATNTISFSDLWKTMLGYEKEDVGSGPTSWEELLHPADRFRNNDLIRGHL-QGETEVFEN 305

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAK-------K 576
           I     K+   + +    + L         +  T  D++  K+ + +L   +       +
Sbjct: 306 IARYRRKDGTYVWMMARGRALRDGRDRVCRFVGTYVDMTRQKELEQQLREVQAMQRMACE 365

Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
            AE  S  KS F+A +SHEIRTP+  ++G  +++++       +    +  +  +RS + 
Sbjct: 366 QAEAASRSKSIFVASMSHEIRTPMNGVLGMLQLLRDTPL----SEAQAKLVHSAERSTDA 421

Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696
           +L+++ D+LD+SK+ESGKM L  +P  L    SE  SL+Q+ A+ K I +  +   ++P 
Sbjct: 422 LLEVIGDILDLSKVESGKMELTIKPFQLASLFSEIQSLMQVRADAKDIQMVFAVPADLPE 481

Query: 697 -ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH------TSNEEVI---LRVRDTGV 746
            +  D   ++QI +NI+ NA+ FT  G ++ +              +V+   + VRDTGV
Sbjct: 482 WVAGDAGCIRQILINIIGNAVKFTERG-RVDVEVECSLRPSSEPGGKVVQLNVSVRDTGV 540

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G       +  +PF +   +  +R  GTGLGL ++K++ +   G     S   +G+  +I
Sbjct: 541 GFGEEFFSRIFQPFSRNEEAGGLRQGGTGLGLAISKSLAELMGGSISAHSVLKQGSQFQI 600



 Score = 41.9 bits (97), Expect = 0.43,   Method: Composition-based stats.
 Identities = 20/184 (10%), Positives = 44/184 (23%), Gaps = 8/184 (4%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKM-IG-MRLCDVSDILH-IDPNNHIGDLLKRQ-N 141
            W+ D        S+     +G     +  G     ++         N+ I   L+ +  
Sbjct: 242 LWDWDLATNTISFSDLWKTMLGYEKEDVGSGPTSWEELLHPADRFRNNDLIRGHLQGETE 301

Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
            +         +GT  YV +      +         F G  +        +     + + 
Sbjct: 302 VFENIARYRRKDGT--YVWMMARGRALRDGRDRVCRFVGTYV--DMTRQKELEQQLREVQ 357

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
                  E  +  S  +       S +   P   +   +  L +    +           
Sbjct: 358 AMQRMACEQAEAASRSKSIFVASMSHEIRTPMNGVLGMLQLLRDTPLSEAQAKLVHSAER 417

Query: 262 LTSE 265
            T  
Sbjct: 418 STDA 421


>gi|58616936|ref|YP_196135.1| putative sensor protein [Ehrlichia ruminantium str. Gardel]
 gi|58416548|emb|CAI27661.1| Putative sensor protein [Ehrlichia ruminantium str. Gardel]
          Length = 477

 Score =  297 bits (761), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 97/252 (38%), Positives = 154/252 (61%), Gaps = 1/252 (0%)

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
             +S+      KL  AK++AE+E+  KS FLA VSHE+RTPL +IIGFSE+IK++  GP+
Sbjct: 216 RMLSKQYDVNLKLKEAKEMAEQENISKSQFLANVSHELRTPLNSIIGFSEMIKSESLGPI 275

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
            N  Y EY N I  SG  +L ++ND+LD SK E+ K+ + F    L + VS   +++   
Sbjct: 276 ENSDYKEYINDIHSSGVHLLSLINDILDFSKAEANKLVIEFIKFDLGKIVSSCFNMMIPR 335

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-SNEEV 737
           A + ++ +     ++   ++AD + +KQ+ +N+LSN++ FTP  G + +   +   ++ +
Sbjct: 336 AEQAKVHLEKVLPSDKVVMVADPKRIKQVIINLLSNSMKFTPENGTVKLVVRYNLEDKLI 395

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
           I+ + DTG+G+   +L K M  FGQ+ +    + EGTGLGLPL+K +V+   G F I S 
Sbjct: 396 IIEITDTGIGIAQQDLYKVMSVFGQVDSKHSRKYEGTGLGLPLSKKLVELMNGIFKIKSE 455

Query: 798 PAKGTLIEIIFP 809
           P  GT+I + FP
Sbjct: 456 PNSGTVITLTFP 467


>gi|115359896|ref|YP_777034.1| periplasmic sensor hybrid histidine kinase [Burkholderia ambifaria
           AMMD]
 gi|115285184|gb|ABI90700.1| periplasmic sensor hybrid histidine kinase [Burkholderia ambifaria
           AMMD]
          Length = 1022

 Score =  297 bits (761), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 110/634 (17%), Positives = 202/634 (31%), Gaps = 34/634 (5%)

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247
               D  A    L    S +      +     E Y      +          +S      
Sbjct: 117 TGQRDEVARYLALSFLLSRIGAASSLNRGRTLEGYHY---STRTGMFGFVPHLSRDNPAL 173

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
           A  D         L    +   P     H           Y   +   ++      +  +
Sbjct: 174 ATPDVRA-RVLAALHVDFDGPAPTDGRPHV-----RWLPPYINPVTGQARIRIAAEARAD 227

Query: 308 HPSLSAYFDEGEN--LTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364
               +    E     L      + P   F + S  N   A    +  T   +   + +  
Sbjct: 228 GQPFAVLVTEYAPEYLLSWLPGRGPAGVFFIASADNRLIAIDPGVERTNALTERLLNLDV 287

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
             +       L  + AI       +    IA                A            
Sbjct: 288 AHADRAADEPLFRDGAIVFRSRLAATGWTIAY-VLSWADVAAGIGVQAGALAASTLVAIV 346

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQL-CSILEATSDGIAIIN-REGIILSTNRAVS 482
              +         +     +     E   L  S++     GI +++  +  ++  +  ++
Sbjct: 347 VMWLLLVRFHRRVLVPVYARSARVFESEALCRSVIAMAPVGIGLVSLSDRRVMLASDVLA 406

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
           ++           P            +  Y   + +    +T+    +     +  L L 
Sbjct: 407 QML---------VPHGGDHHALAAQALAQYDAFVANGGSGRTMMTELVLDAHGDAPLHLE 457

Query: 543 III--KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
           +I    +            D +  ++  ++L  A + A+  ++ KS FLA  SHEIRTPL
Sbjct: 458 VIAHSARYQGEDVLIAIFADTTAQRRLVHQLEEAVRAADSANAAKSSFLAATSHEIRTPL 517

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
             I+G  E+++        +         +  S   +L IV+D+LD SKIE+G M +   
Sbjct: 518 NVILGNLELLERTAL----DASQQSRVQTLRASAEGLLAIVSDILDFSKIEAGAMTVESI 573

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFT 719
              +   +   ++     A  K + +      +  + +  D   + Q+  N+L NAI FT
Sbjct: 574 EFDVIAVIERELAAFAPVARAKGLPLFADIDASAAQRMRGDPTRLAQVVGNLLGNAIKFT 633

Query: 720 PSG---GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
             G    ++ +        E+ + + DTG+G+   +  +  KPF Q+  S   R  GTGL
Sbjct: 634 SEGRIVARVAVGHDVRGRPELAIGIEDTGIGIDPAQHARLFKPFSQVDASITRRYGGTGL 693

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           GL L   +V A  G   + S P  G+L  +  PL
Sbjct: 694 GLALCDRLVAAMGGTISVHSAPGVGSLFTVRLPL 727


>gi|220926384|ref|YP_002501686.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans
           ORS 2060]
 gi|219950991|gb|ACL61383.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans
           ORS 2060]
          Length = 660

 Score =  297 bits (761), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 87/524 (16%), Positives = 177/524 (33%), Gaps = 39/524 (7%)

Query: 311 LSAYFDEGENLTPETVDKCPI--PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
            S      E+     V+       + +   G +   N        Y   + I      S 
Sbjct: 9   ASKAAPASEDRYRLLVEAVTDYAIYMLDPQGRVMSWNRGAQRFKGYSDTEIIGQ--HFSR 66

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
                  +     + + +  S+            ++ +    +    +     +     +
Sbjct: 67  FYTDEDRASGLPARALRIAASEGR---FEQEGWRVRKDG-TLMWAHVVINPIRSDDGTLI 122

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGY 487
               I  +  + R  +  +     +   ++EA +D  I +++ +G + S NR   +  GY
Sbjct: 123 GYAKIMRDLTERRAAQEALRQTEDRYRLLVEAVTDYAIYMLDPQGRVTSWNRGAQRFKGY 182

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
              +I+ + F+ F      +        +         E+      K+  L+   ++I  
Sbjct: 183 SDTEIIGQHFSRFYTDEDRASGLPA-RALRIAASEGRFEQEGWRVRKDGTLMWAHVVIDP 241

Query: 548 LPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKES--SHKSDFLARVSHEIRTPLT 601
           +       +       DI+E +  + +L   +    +             V+H+    L 
Sbjct: 242 IRGDHGELVGFAKITRDITERRNAQLELEETRARFIQAQKMEAIGQLTGGVAHDFNNLLA 301

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
            ++G    +  +R  P  + +  +      ++      +   +L  ++    +  L   P
Sbjct: 302 VVLGNL-SLARKRLPP--DRKLKQLIENSIQAAERGATLTKRMLAFAR----RQELTTGP 354

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           + + E V     L+Q  +    I + T F   +P   AD   ++   LN+  NA    P 
Sbjct: 355 LDVPELVRGMADLLQ-RSIGPNIQVGTRFPLQLPLASADPNQLELALLNLAVNARDAMPQ 413

Query: 722 GGQIIISTTHT-----------SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           GG I I+                   V L V DTG GM    L +A++PF          
Sbjct: 414 GGTITIAAQEERVGTSEIAGLAPGRYVQLSVTDTGEGMDERTLAQAVEPFFTTKG----V 469

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           G+GTGLGL +     + + G+  + ST  +GT  E+  P+ + S
Sbjct: 470 GKGTGLGLSMVHGFAEQSGGRLLLRSTKGQGTTAELWLPVAEAS 513



 Score = 71.2 bits (173), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 19/254 (7%), Positives = 62/254 (24%), Gaps = 14/254 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL---KRQNT 142
            + +D  G +   +    +  G    ++IG              +      L     +  
Sbjct: 32  IYMLDPQGRVMSWNRGAQRFKGYSDTEIIGQHFSRFYTDED-RASGLPARALRIAASEGR 90

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
           +  +      +GT ++  + +   PI S +    G+    I+         +   ++ + 
Sbjct: 91  FEQEGWRVRKDGTLMWAHVVIN--PIRSDDGTLIGYAK--IMRDLTERRAAQEALRQTED 146

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
           ++  L E    ++    +     +  +           + +   +  +    +     L 
Sbjct: 147 RYRLLVEAVTDYAIYMLDPQGRVTSWNRGAQRFKGYSDTEIIGQHFSRFYTDEDRASGLP 206

Query: 263 TSEESSLPEQEDFH------TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
                    +  F         +            ++ +  E   +       +      
Sbjct: 207 ARALRIAASEGRFEQEGWRVRKDGTLMWAHVVIDPIRGDHGELVGFAKITRDITERRNAQ 266

Query: 317 EGENLTPETVDKCP 330
                T     +  
Sbjct: 267 LELEETRARFIQAQ 280



 Score = 60.0 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/251 (6%), Positives = 58/251 (23%), Gaps = 8/251 (3%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL---KRQNT 142
            + +D  G +   +    +  G    ++IG              +      L     +  
Sbjct: 160 IYMLDPQGRVTSWNRGAQRFKGYSDTEIIGQHFSRFYTDED-RASGLPARALRIAASEGR 218

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
           +  +      +GT ++  + +   PI   + E  GF    I        + +   +    
Sbjct: 219 FEQEGWRVRKDGTLMWAHVVID--PIRGDHGELVGFAK--ITRDITERRNAQLELEETRA 274

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
           +F    +++          +D  +  +         +     +    +      +     
Sbjct: 275 RFIQAQKMEAIGQLTGGVAHDFNNLLAVVLGNLSLARKRLPPDRKLKQLIENSIQAAERG 334

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
            +    +        +        +    + +  + S                    +  
Sbjct: 335 ATLTKRMLAFARRQELTTGPLDVPELVRGMADLLQRSIGPNIQVGTRFPLQLPLASADPN 394

Query: 323 PETVDKCPIPF 333
              +    +  
Sbjct: 395 QLELALLNLAV 405


>gi|296503205|ref|YP_003664905.1| sporulation kinase [Bacillus thuringiensis BMB171]
 gi|296324257|gb|ADH07185.1| sporulation kinase [Bacillus thuringiensis BMB171]
          Length = 595

 Score =  297 bits (761), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 89/501 (17%), Positives = 176/501 (35%), Gaps = 41/501 (8%)

Query: 314 YFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                E      +   P+    +  +G+    N    ++T Y + + I     L  L   
Sbjct: 107 LLSRKEEELHTILQNMPVMVDALDYNGDFVLWNRECEIVTGYTAEEIIGNPNALQLLYPD 166

Query: 373 PKLSDNNAIKPVM----LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
                    K +         +      +  + TI W+                      
Sbjct: 167 HNYRHQIQKKFLTCGKNFRDWEMHLTCKNGEIKTIMWSN-----------ISEQFPVTGY 215

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
               +  +    +  + +++ +  +L  I +A  D   +   +G I+         F  P
Sbjct: 216 SYWAVGVDITHLKAIEEQLKQQTSELELIFKALPDLCFLTEDDGTIIDYKAGSPTKFYVP 275

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            E  + K F   L  +        + ++        +E           +         L
Sbjct: 276 AETFMGKKFYEVLPTSVAQQFQEAINQVKEKGTNVIVEYPLTL---NGSIDFFEARCLPL 332

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                  + + DI+E K+ +  L+ +  +A           A V+HE+R PLT I GF +
Sbjct: 333 LHDK-IMIIVRDITERKKTEELLNKSDTLA-----AIGQLAAGVAHEVRNPLTVIKGFIQ 386

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
                    +       Y + +      +  I+ + L I+K +     ++ E  ++    
Sbjct: 387 ------LFQINKEDQERYFDLMLSEIERIEAILQEFLSIAKTD----EINTEKKNIYRIF 436

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
              +SL+   A  K I +     +    I      +KQ+ +NIL N+I   P+GG+I I 
Sbjct: 437 KNVVSLMNTKAIMKNIQVELFTDDKDIIIECSENQLKQVFINILQNSIEAMPNGGEISIH 496

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
               +++ VI+ V D G+G+    +++  +PF         + +GTG+GL L+  +++++
Sbjct: 497 IKEINDDGVIIHVIDEGIGIPEERIKRLGEPFY------STKEKGTGIGLMLSYKIIESH 550

Query: 789 MGKFYIFSTPAKGTLIEIIFP 809
            G   I S    GT + I  P
Sbjct: 551 QGTISIMSEVGVGTTVTIYLP 571


>gi|262381430|ref|ZP_06074568.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
 gi|262296607|gb|EEY84537.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
          Length = 423

 Score =  297 bits (761), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 101/386 (26%), Positives = 178/386 (46%), Gaps = 33/386 (8%)

Query: 446 KMEIEVMQ---------LCSILEATSDGIAIINR-EG-IILSTNRAVSKLFGYPVEDILR 494
           ++E+   Q         + +IL      I + +   G   +  N+A  +  G   EDIL 
Sbjct: 36  ELEMRQSQHTINFLNILMDTILSNVFVEITVKDIFNGFRYIYFNKAAEEFTGVKAEDILG 95

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK-----LLSLRIIIKKLP 549
           K        ++         +  ++   + ++++        +     ++ L I      
Sbjct: 96  KTDFELF-PDSRRAHEIRTEDYHTIKTGRMVKEMVEYEKPNGEVRIVNIVRLLITNPDPG 154

Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
            S    + ++DI+E +Q++  L   +    +    K+ F+A +SHEIRTPL AI+GF+ +
Sbjct: 155 ASPLLLIMLNDITEQRQDQLALMKVQ----EADKMKNAFIANMSHEIRTPLNAIVGFAHL 210

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           +              EY + I+++ +L+L ++ND+LD+SKIESG++N +   V L +   
Sbjct: 211 VTETTNAS----EQREYFSIINKNCDLLLKLINDILDLSKIESGRLNYNVSEVELRDICQ 266

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
           EA  +  L       L+  S A    R+  D   V+Q+ LN+LSNAI FT  G    IS 
Sbjct: 267 EAYVVQSLKMTSDVALLYNSVAMPSVRLWIDPHRVEQVLLNLLSNAIKFTSKG---FISL 323

Query: 730 THT-SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
            +   +  V + V DTG+G++  +LE   + F ++ +      +G GLGLP+ K +V+  
Sbjct: 324 FYEVEDMFVRVSVMDTGIGISEEKLESVFERFVKLDDF----YQGAGLGLPICKMIVEQL 379

Query: 789 MGKFYIFSTPAKGTLIEIIFPLYDTS 814
            G+  + S   KG+      PL  T 
Sbjct: 380 GGEIGVRSELGKGSTFWFTLPLVVTD 405


>gi|66043534|ref|YP_233375.1| PAS [Pseudomonas syringae pv. syringae B728a]
 gi|63254241|gb|AAY35337.1| PAS [Pseudomonas syringae pv. syringae B728a]
          Length = 595

 Score =  297 bits (761), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 89/427 (20%), Positives = 171/427 (40%), Gaps = 28/427 (6%)

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK--R 445
            + R      A         E    +T  P   A +      + GI  E +         
Sbjct: 193 IARRFGAPIEALAKAADRIGEGDYEVTL-PISSAAEMNLLTRRFGIMAEALRQHQATNVD 251

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           ++     +L ++L++  DG+ +I+R+G +   N    +  G+    +             
Sbjct: 252 ELLAGQQRLQAVLDSIDDGLLMIDRQGHLEHLNPVAQRQLGWDESRLGHSLGEALGRPEL 311

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISE 563
              ++  L         + L         E +LL+  +              + +HD++E
Sbjct: 312 DEQLHLVLRGGTLERAPEDLAIEI---DGESRLLTYSMTPVSHTKGHILGAVMVLHDVTE 368

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            +  +                +S+F+ R SHE+RTP+T  +  +  +  +R       R 
Sbjct: 369 QRAFE--------------RVRSEFVLRASHELRTPVTG-MHMAFGLLQERLHFAPESRE 413

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            +  N +      ++ ++NDLL+ S+ ++G   L   P S++  + EA +  +  A E+ 
Sbjct: 414 ADLLNTVTEEMQRLMQLINDLLNFSRYQNGLQKLKLAPCSIETLLQEAKARFEDQAQEQD 473

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
           I++       +PR+ AD   ++++  N+L NA+  TP  G I +       E  I+ V D
Sbjct: 474 IVLMLDMQEPMPRLHADQSQLERVLDNLLDNALRHTPPNGLIRLQ-ARRHGERAIISVED 532

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
            G G+   +  +  +PF Q+      +  G GLGL L K +V  + G+  ++S P +GT 
Sbjct: 533 NGEGIAYGQQGRIFEPFVQV----GRKKGGAGLGLALCKEIVQLHGGRMGVYSRPGQGTQ 588

Query: 804 IEIIFPL 810
             +  PL
Sbjct: 589 FYMALPL 595



 Score = 45.4 bits (106), Expect = 0.036,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 69/241 (28%), Gaps = 9/241 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G+L+ ++    + +G    + +G  L +      +D       L+ R  T      
Sbjct: 274 IDRQGHLEHLNPVAQRQLGWDESR-LGHSLGEALGRPELDEQ---LHLVLRGGTLERAPE 329

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
              IE       +  +  P+        G     ++H          +  R +      H
Sbjct: 330 DLAIEIDGESRLLTYSMTPVSHTKGHILGA--VMVLHDVTEQRAFERV--RSEFVLRASH 385

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           E++   + +      +  +    P  R  + ++++TE    +   L  +       +   
Sbjct: 386 ELRTPVTGMHMAFGLLQERLHFAPESREADLLNTVTE-EMQRLMQLINDLLNFSRYQNGL 444

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
              +    +I       K  F                   P L A   + E +    +D 
Sbjct: 445 QKLKLAPCSIETLLQEAKARFEDQAQEQDIVLMLDMQEPMPRLHADQSQLERVLDNLLDN 504

Query: 329 C 329
            
Sbjct: 505 A 505


>gi|323126806|gb|ADX24103.1| sensor histidine kinase [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 450

 Score =  297 bits (761), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 89/406 (21%), Positives = 164/406 (40%), Gaps = 36/406 (8%)

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDT-RINKRKMEIEVMQLCSILEATSDGIAIINREG 472
            +          E M       +  D  R+    +  E  +L SIL   SDG+   +R G
Sbjct: 55  RYTDMINEKADIELMELADQLNDLSDVFRLTHENLAQEKNRLASILAYMSDGVLATDRSG 114

Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
            I+  N    K      E  L K  T  LE +TP      +         +T        
Sbjct: 115 KIIMINETARKQLNLTKEKALEKNITDLLEGDTPYTYRELV--------SKTPVVTVNSR 166

Query: 533 TKEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
               + ++LR+        S +     + +HD +E ++E+ +                 F
Sbjct: 167 NDMGEFVTLRLRFALNRRESGFISGLVVVLHDTTEQEKEERERRL--------------F 212

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
           ++ VSHE+RTPLT++  + E +     G +       +        N ++ +++DLL++S
Sbjct: 213 VSNVSHELRTPLTSVKSYLEAL---DEGAIKEDIAPSFIKVSLDETNRMMRMISDLLNLS 269

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR-----ILIRTSFANNIPRILADLRS 703
           +I++    L  E  +    ++  ++   L  N+         I   +      +  D   
Sbjct: 270 RIDNQVTQLSVEMTNFTAFMTSILNRFDLVKNQHTGTGKVYEIVRDYPITSVWLEIDNDK 329

Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
           + Q+  NIL+NAI ++P GG+I +    T   ++I+ + D G+G+   +L      F ++
Sbjct: 330 MTQVIENILNNAIKYSPDGGKITVRMKTTDT-QLIISISDQGLGIPKKDLPLIFDRFYRV 388

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             ++     GTGLGL +AK ++  + G  +  S   KG+   I+ P
Sbjct: 389 DKARSRAQGGTGLGLAIAKEIIKQHHGFIWAKSDYGKGSTFTIVLP 434


>gi|212218276|ref|YP_002305063.1| two component system histidine kinase [Coxiella burnetii CbuK_Q154]
 gi|212012538|gb|ACJ19918.1| two component system histidine kinase [Coxiella burnetii CbuK_Q154]
          Length = 831

 Score =  297 bits (761), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 91/511 (17%), Positives = 194/511 (37%), Gaps = 40/511 (7%)

Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
            F+   G +  AN   + L + K               D    +   A K  +    ++ 
Sbjct: 48  LFISDEGFIEAANDFAIKLLQLKP----------DQFPDVDFHAFCRANKYSLSRFFNKV 97

Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
                A   T        + +       +           +  +    ++   +++ ++ 
Sbjct: 98  EPPTEALEETYLLKGRQYVILW-KIIRFSQFDDMLKGSLLVGHDRTQLKLVSGELKTKIF 156

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL--RKPFTVFLEQNTPSVMN 510
              +IL      +   ++  + L  N  ++++ G P    +     F    E+       
Sbjct: 157 FYENILSKLPTNVYWKDKNSVYLGCNERLARVMGLPSRKAIEGMTDFDFVWEKEAAKSFI 216

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQ 566
            +  +++   +    E +         ++++      L               DI+E K+
Sbjct: 217 EFDQKVMRSGIPLMTEDVFE--EASGNIVTVLTNKTPLKNEHGETMGVLAISVDITELKK 274

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN--QRFGPLGNPRYI 624
            + +L   ++ AE  +  KS+F+A +SH+IRTP+  ++G  + + N  +      N   +
Sbjct: 275 TQAQLEIQRQKAEAANKAKSEFIANMSHDIRTPIAGMLGMLQDLLNVPEETKTSSNASIL 334

Query: 625 EYANYIDR-------SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
                + R       + + +L + N++L++ ++ESGK +   E   L E +   I L+Q 
Sbjct: 335 NVIETVQRDSELLMGATDELLQLCNEILEVVRLESGKESEQSEAFDLRELIKRTIELLQP 394

Query: 678 YANEKRILIRTSFANNIPRILADLRS--VKQIALNILSNAIHFTPSG-GQIIIST----- 729
            A++K++ +       +P+   D     + +  LN++SNA+ FT +G  ++ +       
Sbjct: 395 VAHQKKLTLACEVDEGVPQ-YLDGIRMYLSRTLLNLISNALKFTENGFVKVKVRLSDKTN 453

Query: 730 ---THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
                     + + V DTG+G+   + +   + F ++  S +   +G GLGL   K  VD
Sbjct: 454 SHYRVGDKATIQIAVEDTGMGIPRDKFDTIFEHFSRLTPSYEGLYKGAGLGLYTVKRYVD 513

Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
           A  G+  + S   KGT   +I P     H  
Sbjct: 514 AMGGEITVDSEVGKGTCFNVIIPFTVADHAE 544


>gi|114776540|ref|ZP_01451585.1| Two component system histidine kinase [Mariprofundus ferrooxydans
           PV-1]
 gi|114553370|gb|EAU55768.1| Two component system histidine kinase [Mariprofundus ferrooxydans
           PV-1]
          Length = 1017

 Score =  297 bits (761), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 84/263 (31%), Positives = 134/263 (50%), Gaps = 16/263 (6%)

Query: 563 EWKQEKN--KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           E +  +    L+ A +   + +  KS F++ +SHE+RTPLT+I GFSE + +   GPL N
Sbjct: 298 EARIMERTADLTSANEALTRANQAKSQFISNMSHELRTPLTSINGFSEFLIDGFVGPL-N 356

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
               +Y   I+ SG  +L+++N +LD++KIE+GKM L  E V +   + E + ++Q YA 
Sbjct: 357 ETQTKYLKNINISGKHLLELINGILDLAKIEAGKMTLKLEKVDVAALLDEILLVLQGYAT 416

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST----------- 729
           +  + +       IP I+ D    KQI  N+ SNAI F+P GG++ I             
Sbjct: 417 KTSVRLLLECDAAIPGIVLDRTKFKQILYNLCSNAIKFSPQGGEVRIVVDYNNSAAGQHN 476

Query: 730 --THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
                S   + + + D G+G++  +      PF Q   S     EGTGLGL L + +V+ 
Sbjct: 477 DDELESYARLTVAIHDEGIGISPEDQVHIFNPFEQADGSHSRNYEGTGLGLTLTQRLVEM 536

Query: 788 NMGKFYIFSTPAKGTLIEIIFPL 810
           + G   + S P KG+      P+
Sbjct: 537 HGGSIEVNSAPDKGSCFVFTLPV 559


>gi|260866559|ref|YP_003232961.1| sensory histidine kinase PhoR in two-component regulatory system
           with PhoB [Escherichia coli O111:H- str. 11128]
 gi|257762915|dbj|BAI34410.1| sensory histidine kinase PhoR in two-component regulatory system
           with PhoB [Escherichia coli O111:H- str. 11128]
 gi|323178338|gb|EFZ63916.1| phosphate regulon sensor kinase PhoR [Escherichia coli 1180]
          Length = 431

 Score =  297 bits (761), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 73/427 (17%), Positives = 150/427 (35%), Gaps = 37/427 (8%)

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             +L       I     L  + W     L +         +        G+    +  + 
Sbjct: 33  WFLLASVTGLLIWHFWNLLRLSW----WLWVDRSMTPPPGRGSWEPLLYGLHQMQLRNKK 88

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            +R++   + +  S  E+  D + +   EG I   N    ++ G    +   +     L 
Sbjct: 89  RRRELGNLIKRFRSGAESLPDAVVLTTEEGGIFWCNGLAQQILGLRWPEDNGQNILNLLR 148

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
               +               +   +         + L +R++           +   D++
Sbjct: 149 YPEFTQYL----------KTRDFSRPLNLVLNTGRHLEIRVMPYTHKQ---LLMVARDVT 195

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  Q +                + +F A VSHE+RTPLT + G+ E++  Q        +
Sbjct: 196 QMHQLEG--------------ARRNFFANVSHELRTPLTVLQGYLEMMDEQPLEGAVREK 241

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                + +      +  +V  LL +SKIE+    L  E V +   +       Q  + +K
Sbjct: 242 A---LHTMREQTQRMEGLVKQLLTLSKIEAAPTQLLNEKVDVPMMLRVVEREAQTLSQKK 298

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           +        N + ++  +   ++    N++ NA++ TP G  I +      +      V 
Sbjct: 299 Q-TFTFEIDNGL-KVSGNEDQLRSAISNLVYNAVNHTPEGTHITVRWLRVPHG-AEFSVE 355

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G G+    + +  + F ++  ++  +  G+GLGL + K  V+ +  +  I ST  KGT
Sbjct: 356 DNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHAVNHHESRLNIESTVGKGT 415

Query: 803 LIEIIFP 809
               + P
Sbjct: 416 RFSFVIP 422


>gi|260853620|ref|YP_003227511.1| sensory histidine kinase PhoR in two-component regulatory system
           with PhoB [Escherichia coli O26:H11 str. 11368]
 gi|257752269|dbj|BAI23771.1| sensory histidine kinase PhoR in two-component regulatory system
           with PhoB [Escherichia coli O26:H11 str. 11368]
 gi|323152133|gb|EFZ38426.1| phosphate regulon sensor kinase PhoR [Escherichia coli EPECa14]
          Length = 431

 Score =  297 bits (761), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 73/427 (17%), Positives = 150/427 (35%), Gaps = 37/427 (8%)

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             +L       I     L  + W     L +         +        G+    +  + 
Sbjct: 33  WFLLASVTGLLIWHFWNLLRLSW----WLWVDRSMTPPPGRGSWEPLLYGLHQMQLRNKK 88

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            +R++   + +  S  E+  D + +   EG I   N    ++ G    +   +     L 
Sbjct: 89  RRRELGNLIKRFRSGAESLPDAVVLTTEEGGIFWCNGLAQQILGLRWPEDNGQNILNLLR 148

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
               +               +   +         + L +R++           +   D++
Sbjct: 149 YPEFTQYL----------KTRDFSRPLNLVLNTGRHLEIRVMPYTHKQ---LLMVARDVT 195

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  Q +                + +F A VSHE+RTPLT + G+ E++  Q        +
Sbjct: 196 QMHQLEG--------------ARRNFFANVSHELRTPLTVLQGYLEMMDEQPLEGAVREK 241

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                + +      +  +V  LL +SKIE+    L  E V +   +       Q  + +K
Sbjct: 242 A---LHTMREQTQRMEGLVKQLLTLSKIEAAPTQLLNEKVDVPMMLRVVEREAQTLSQKK 298

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           +        N + ++  +   ++    N++ NA++ TP G  I +      +      V 
Sbjct: 299 Q-TFTFEIDNGL-KVSGNEDQLRSAISNLVYNAVNHTPEGTHITVRWLRVPHG-AEFSVE 355

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G G+    + +  + F ++  ++  +  G+GLGL + K  V+ +  +  I ST  KGT
Sbjct: 356 DNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHAVNHHESRLNIESTVGKGT 415

Query: 803 LIEIIFP 809
               + P
Sbjct: 416 RFSFVIP 422


>gi|161830777|ref|YP_001596909.1| putative sensor protein gacS [Coxiella burnetii RSA 331]
 gi|161762644|gb|ABX78286.1| putative sensor protein gacS [Coxiella burnetii RSA 331]
          Length = 808

 Score =  297 bits (761), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 91/511 (17%), Positives = 193/511 (37%), Gaps = 40/511 (7%)

Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
            F+   G +  AN   + L + K               D    +   A K  +    ++ 
Sbjct: 25  LFISDEGFIEAANDFAIKLLQLKP----------DQFPDVDFHAFCRANKYSLSRFFNKV 74

Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
                A   T        + +       +           +  +    ++   +++ ++ 
Sbjct: 75  EPPTEALEETYLLKGRQYVILW-KIIRFSQFDDMLKGSLLVGHDRTQLQLVSGELKSKIF 133

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL--RKPFTVFLEQNTPSVMN 510
              +IL      +   ++  + L  N  ++++ G P    +     F     +       
Sbjct: 134 FYENILSKLPTNVYWKDKNSVYLGCNERLARVMGLPSRKAIEGMTDFDFVWGKEAAKSFI 193

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQ 566
            +  +++   +    E   +       ++++      L               DI+E K+
Sbjct: 194 EFDQKVMRSGISLMTED--VFKEASGNIVTVLTNKTPLKNEHGETIGVLAISVDITELKK 251

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN--QRFGPLGNPRYI 624
            + +L   ++ AE  +  KS+F+A +SH+IRTP+  ++G  + + N  +      N   +
Sbjct: 252 TQAQLEIQRQKAEAANKAKSEFIANMSHDIRTPIAGMLGMLQDLLNVAEETKTSSNASIL 311

Query: 625 EYANYIDR-------SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
                + R       + + +L + N++L++ ++ESGK +   E   L E +   I L+Q 
Sbjct: 312 NVIETVQRDSELLMGATDELLQLCNEILEVIRLESGKESEQSEAFDLRELIKRTIELLQP 371

Query: 678 YANEKRILIRTSFANNIPRILADLRS--VKQIALNILSNAIHFTPSG-GQIIIST----- 729
            A++K++ +       IP+   D     + +  LN++SNA+ FT +G  ++ +       
Sbjct: 372 VAHQKKLTLACEVDEGIPQ-YLDGIRMYLSRTLLNLISNALKFTENGFVKVKVRLSDKTN 430

Query: 730 ---THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
                     + + V DTG+G+   + +   + F ++  S +   +G GLGL   K  VD
Sbjct: 431 SHYRVGDKATIQIAVEDTGMGIPRDKFDTIFEHFSRLTPSYEGLYKGAGLGLYTVKRYVD 490

Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
           A  G+  + S   KGT   +I P     H  
Sbjct: 491 AMGGEITVDSEVGKGTCFTVIIPFTVADHAE 521



 Score = 39.6 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 28/260 (10%), Positives = 73/260 (28%), Gaps = 17/260 (6%)

Query: 81  RTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI----GDL 136
                 W  D +      +E L + +G  + K I   + D   +   +           +
Sbjct: 142 LPTNVYWK-DKNSVYLGCNERLARVMGLPSRKAI-EGMTDFDFVWGKEAAKSFIEFDQKV 199

Query: 137 LKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRAL 196
           ++   +   +       G    V +     P+ + + E  G     +          +A 
Sbjct: 200 MRSGISLMTEDVFKEASGNI--VTVLTNKTPLKNEHGETIGVLAISV--DITELKKTQAQ 255

Query: 197 GKRLDKKFSHLHEIKKGHSSVEKEKYDI----FSQQSPPPHLRMKNKVSSLTEYYAHKDD 252
            +   +K    ++ K    +                        +   +S      +  +
Sbjct: 256 LEIQRQKAEAANKAKSEFIANMSHDIRTPIAGMLGMLQDLLNVAEETKTSSNASILNVIE 315

Query: 253 VLKTEKYPLLTSEESSLP---EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
            ++ +   L+ + +  L    E  +   +   + +++     L+   K + E L    H 
Sbjct: 316 TVQRDSELLMGATDELLQLCNEILEVIRLESGKESEQSEAFDLRELIKRTIELLQPVAHQ 375

Query: 310 SLSAYFDEGENLTPETVDKC 329
                  E +   P+ +D  
Sbjct: 376 KKLTLACEVDEGIPQYLDGI 395


>gi|298251657|ref|ZP_06975460.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297546249|gb|EFH80117.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 484

 Score =  297 bits (761), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 82/495 (16%), Positives = 176/495 (35%), Gaps = 31/495 (6%)

Query: 319 ENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
                  ++  P   +    +G   Y N  +           +E    +          D
Sbjct: 12  PASGDTLIEAIPQLVWTARPNGWHEYVNQRWRDYVGLT----LEQVQSVWAHFQFIHPDD 67

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
               + +    +  T           Q                 ++  + +   G   + 
Sbjct: 68  QEGNR-MHWEYALETGAMFEHEERLKQGPTGEYRWFLTRAMPMRDETGQIVTLFGTCTDI 126

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL--RK 495
            + +  +  +   + +  +++++   GI +   E  I+  N    ++  Y  ED+     
Sbjct: 127 DEQKRIEETLRPALERADTLMKSKIIGIFVTEGE-QIVDANDTFLRMTSYTREDLRAGCM 185

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555
                      +       E+ + +     EK  L    +   L + +       S    
Sbjct: 186 NVLQMTPPEYMARTLQARQELDTQESMTPYEKEYLCQ--DGSRLPVLVCGVVFQHSPRQV 243

Query: 556 L-TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
           + ++ D S  K+ +                K DFL  VSHE+ TPLTA+   +  +  +R
Sbjct: 244 IHSVLDNSARKELEQH--------------KYDFLNIVSHELGTPLTAVKLQT-HLVRKR 288

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                        + ++     +  ++ +LLD SKI++G++    + V LDE + E    
Sbjct: 289 LEKHSQHEAATELSRVEGPVKQLERLIAELLDASKIQAGRLEYVRKRVDLDELLREVTDT 348

Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
           +Q  +    I++R S   ++   + D   + Q+  N+LSNA+ ++P    + +  + +  
Sbjct: 349 MQHTSPSHTIVVRGSVQTSL---IGDRDRLGQVFSNLLSNAMKYSPDAKTVEVELSSSEE 405

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
             V + VRD G+G+   + +K  + F +   ++     G G+GL +   +V  + G   +
Sbjct: 406 A-VTILVRDHGLGIPREQCDKIFERFYRADIARLRAIPGLGMGLSIVAEIVKGHGGTIVV 464

Query: 795 FSTPAKGTLIEIIFP 809
            S   KG+   +  P
Sbjct: 465 DSDVGKGSAFTVTLP 479



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/389 (7%), Positives = 97/389 (24%), Gaps = 29/389 (7%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKM--IGMRLCDVSDILHIDPNNHIGD-LLKRQN 141
             W    +G+ + +++     +G    ++  +             + N    +  L+   
Sbjct: 25  LVWTARPNGWHEYVNQRWRDYVGLTLEQVQSVWAHF-QFIHPDDQEGNRMHWEYALETGA 83

Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
            +  +        T  Y      A+P+     +      FG               +   
Sbjct: 84  MFEHEE-RLKQGPTGEYRWFLTRAMPMRDETGQIVTL--FGTCTDIDEQKRIEETLRPAL 140

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS-----LTEYYAHKDDVLKT 256
           ++   L + K     V + +  + +  +         +        + +    +      
Sbjct: 141 ERADTLMKSKIIGIFVTEGEQIVDANDTFLRMTSYTREDLRAGCMNVLQMTPPEYMARTL 200

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
           +    L ++ES  P ++++   + ++          Q+      + +      S     +
Sbjct: 201 QARQELDTQESMTPYEKEYLCQDGSRLPVLVCGVVFQH---SPRQVIHSVLDNSARKELE 257

Query: 317 EGENLTPETVDK-CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGG----LSTLLD 371
           + +      V      P                   +++++  ++    G    L  L+ 
Sbjct: 258 QHKYDFLNIVSHELGTPLTAVKLQTHL-VRKRLEKHSQHEAATELSRVEGPVKQLERLIA 316

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
               +       +   R           +     +   S  +      + +   +     
Sbjct: 317 ELLDASKIQAGRLEYVRKRVDLDELLREVTDTMQHTSPSHTIVVRGSVQTSLIGDRDRLG 376

Query: 432 GIEPEDV--------DTRINKRKMEIEVM 452
            +    +        D +  + ++     
Sbjct: 377 QVFSNLLSNAMKYSPDAKTVEVELSSSEE 405


>gi|94264852|ref|ZP_01288627.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93454673|gb|EAT04938.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 399

 Score =  297 bits (760), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 73/254 (28%), Positives = 128/254 (50%), Gaps = 13/254 (5%)

Query: 565 KQEKNKLSHAK---KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           ++ +     A+   + A+  +  KS+FLA +SHEIRTP+  +IG + ++ ++        
Sbjct: 143 RRLEEAAVQAEELARQAQAANIAKSEFLANMSHEIRTPMNGVIGMASLLLSEDLTA---- 198

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
             + Y   I  SG  +L+++N +LD SKIE+G++ L + P S  E V E + L+Q  A  
Sbjct: 199 EQLSYVKVIKTSGEALLELINQILDFSKIEAGRLELDYRPFSPRELVQEVVLLLQPQAAA 258

Query: 682 KRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVIL 739
           + + +    +  IP I   D   ++Q+ LN++ NAI FT  GG  I +S           
Sbjct: 259 QNLALTCEISPGIPAIAEGDPVRLRQVLLNLVGNAIKFTEVGGVAIELSPAPADPAAPEF 318

Query: 740 R----VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
                V+D+G+G+   +++   + F Q+  S   +  GTGLGL + + +V+   G+  + 
Sbjct: 319 SCYFAVKDSGIGIPAEKIDLLFQRFQQLDGSTCRKYGGTGLGLAICRRLVELMGGEVGVE 378

Query: 796 STPAKGTLIEIIFP 809
           S   KG+      P
Sbjct: 379 SEVGKGSTFWFTVP 392


>gi|188493157|ref|ZP_03000427.1| phosphate regulon sensor protein PhoR [Escherichia coli 53638]
 gi|188488356|gb|EDU63459.1| phosphate regulon sensor protein PhoR [Escherichia coli 53638]
          Length = 431

 Score =  297 bits (760), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 72/427 (16%), Positives = 151/427 (35%), Gaps = 37/427 (8%)

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             +L       I     L  + W     L +         +        G+    +  + 
Sbjct: 33  WFLLASVTGLLIWHFWNLLRLSW----WLWVDRSMTPPPGRGSWEPLLYGLHQMQLRNKK 88

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            +R++   + +  S  E+  D + +   EG I   N    ++ G    +   +     L 
Sbjct: 89  RRRELGNLIKRFRSGAESLPDAVVLTTEEGGIFWCNGLAQQILGLRWPEDNGQNILNLLR 148

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
               +               +   +         + L +R++           +   D++
Sbjct: 149 YPEFTQYL----------KTRDFSRPLNLVLNTGRHLEIRVMPYTHKQ---LLMVARDVT 195

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  Q +                + +F A VSHE+RTPLT + G+ E++  Q        +
Sbjct: 196 QMHQLEG--------------ARRNFFANVSHELRTPLTVLQGYLEMMDEQPLEGAVREK 241

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                + +      +  +V  LL +SKIE+   +L  E V +   +       +  + +K
Sbjct: 242 A---LHTMREQTQRMEGLVKQLLTLSKIEAAPTHLLNEKVDVPMMLRVVEREAKTLSQKK 298

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           +        N + ++  +   ++    N++ NA++ TP G  I +      +      V 
Sbjct: 299 Q-TFTFEIDNGL-KVSGNEDQLRSAISNLVYNAVNHTPEGTHITVRWQRVPHG-AEFSVE 355

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G G+    + +  + F ++  ++  +  G+GLGL + K  V+ +  +  I ST  KGT
Sbjct: 356 DNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHAVNHHESRLNIESTVGKGT 415

Query: 803 LIEIIFP 809
               + P
Sbjct: 416 RFSFVIP 422


>gi|228908366|ref|ZP_04072210.1| hypothetical protein bthur0013_25270 [Bacillus thuringiensis IBL
           200]
 gi|228851274|gb|EEM96084.1| hypothetical protein bthur0013_25270 [Bacillus thuringiensis IBL
           200]
          Length = 590

 Score =  297 bits (760), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 88/507 (17%), Positives = 177/507 (34%), Gaps = 41/507 (8%)

Query: 314 YFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                E      +   P+    +  +G+    N    ++T Y + + I     L  L   
Sbjct: 102 LLSRKEEELHTILQNMPVMVDALDYNGDFVLWNRECEIVTGYTAEEIIGNPNALQLLYPD 161

Query: 373 PKLSDNNAIKPVM----LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
                    K +         +      +  + TI W+                      
Sbjct: 162 HSYRQKIQKKFLTCGKNFRDWEMHLTCKNGEIKTIMWSN-----------ISEQFPVTGY 210

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
               +  +    +  + +++ +  +L  I +A  D   +   +G I+         F  P
Sbjct: 211 SYWAVGVDITHLKAIEEQLKQQTSELELIFKALPDLCFLTEDDGTIIDYKAGSPTKFYVP 270

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            E  + K F   L  +        + ++        +E           +         L
Sbjct: 271 AEAFMGKKFYEVLPSSVAQQFQEAINQVKEKGTNVIVEYPLTL---NGSIDFFEARCLPL 327

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                  + + DI+E K+ +  L+ +  +A           A V+HE+R PLT I GF +
Sbjct: 328 LHDK-IMIIVRDITERKKTEELLNKSDTLA-----AIGQLAAGVAHEVRNPLTVIKGFIQ 381

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
                    +       Y + +      +  I+ + L I+K +     ++ E  ++ +  
Sbjct: 382 ------LFQINKEDQERYFDLMLSEIERIEAILQEFLSIAKTD----EINTEKKNIYQIF 431

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
              +SL+   A    I +     +    I      +KQ+ +NIL N+I   P+GG+I I 
Sbjct: 432 KNVVSLMNTKAIMTNIQVELFTDDKDIIIECSENQLKQVFINILQNSIEAMPNGGEISIH 491

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
               +++ VI+ V D G+G+    +++  +PF         + +GTG+GL L+  +++++
Sbjct: 492 IKEINDDGVIIHVIDEGIGIPEERIKRLGEPFY------STKEKGTGIGLMLSYKIIESH 545

Query: 789 MGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            G   I S    GT + I  P   +  
Sbjct: 546 QGTISIMSEVGVGTTVTIYLPKVQSKQ 572


>gi|227821337|ref|YP_002825307.1| two component sensor kinase [Sinorhizobium fredii NGR234]
 gi|227340336|gb|ACP24554.1| two component sensor kinase [Sinorhizobium fredii NGR234]
          Length = 527

 Score =  297 bits (760), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 103/362 (28%), Positives = 179/362 (49%), Gaps = 8/362 (2%)

Query: 454 LCSILEATSDGIAIINREGIILSTNRA-VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
           L +  +  +  + + +  G +LS +           + D   + F   +  +        
Sbjct: 110 LSAAYDLFAGLVTVHDPRGQVLSVHGRDAVDHLQ-SMRDPRGRGFVEQIYVSDRISFLKA 168

Query: 513 LTEILSLDLRQTLEKITLGSTKEE-KLLSLRIIIKKLPFSSCYSLTM----HDISEWKQE 567
           +  +        ++      +    + + +R  +  L  +    + +     D+S   + 
Sbjct: 169 IDALRQGAACSAVDIRLERPSASSAQFVHMRCEMTPLRDAEGRLMAIVAQSRDVSAEARL 228

Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
           + + +     AE  +  K+ FLA VSHE+RTPL AI+GFS+V+  + FG L N R  EY 
Sbjct: 229 RAEAAAKAAHAESANDAKTRFLAAVSHELRTPLNAILGFSDVLTGEYFGKLENDRQREYV 288

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
           + I RSG  +L +VN +LD+SKIE+G+  L  EP  + +A++   +++   A EK + + 
Sbjct: 289 SLIHRSGTHLLSVVNTMLDVSKIEAGRYELVPEPFRVADAIAACEAMLSHQAREKGVRLT 348

Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747
           +    ++  I AD R+V+QI +N++ NA+ FT  GG + +         + L V DTG+G
Sbjct: 349 SRVTRSVGEINADQRAVQQILINLVGNAVKFTDKGGLVTVDAEV-DGAMLNLTVSDTGIG 407

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           +   +LEK  +PF QI N    R EGTGLGL L K +V+ + G   I S+  +GT++ + 
Sbjct: 408 IAEDKLEKLGQPFVQIQNDYTRRYEGTGLGLSLVKGLVELHGGGISIRSSEGEGTVVVVS 467

Query: 808 FP 809
            P
Sbjct: 468 IP 469


>gi|162448983|ref|YP_001611350.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
            ce 56']
 gi|161159565|emb|CAN90870.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
            ce 56']
          Length = 1307

 Score =  297 bits (760), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 104/669 (15%), Positives = 221/669 (33%), Gaps = 44/669 (6%)

Query: 183  IVHVNRVDNDPRALGKRLDKK---FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK 239
            I+ + R   D   L  R          L  + +    V+  +            L + ++
Sbjct: 507  ILLLLRAREDQVELVVRDTGTGIPEHELPHLFERFHRVQGARARTHEGS--GIGLALVHE 564

Query: 240  VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
            +  L       +  L       +     S     +         +           +   
Sbjct: 565  LVRLHGGSIRAESRLGEGTAFTIAIPRGSAHLPAERIHAEKTLSSTATGAAPYVEEALRW 624

Query: 300  FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDD 359
                        SA   E ++L+        I     +     Y           ++V D
Sbjct: 625  QLAAEAPALALASADRVESDHLSVPLDPSARILLADDNADMRMYVRRILDARWTVEAVSD 684

Query: 360  ------IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
                  +        ++    +   +    +   R+D         + + +   E+ +  
Sbjct: 685  GAAALDVARRSPPDLVIADVMMPGLDGFGLLRALRADPVTRCVPVIMLSARAGEESRVEG 744

Query: 414  TFIPFEKANQFPENMPQ-NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII-NRE 471
                 +     P +  +        +    ++R  E E  ++ ++ E    GIA+    E
Sbjct: 745  LAAGADDYLVKPFSARELIARVATHLQLGEHRRAAERERGKMFALFEQAPVGIAVYRGPE 804

Query: 472  GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR---QTLEKI 528
             +I   N  +  + G+   D++ +       +   S +      + +             
Sbjct: 805  HVIEMANPRLVAMVGHR--DVIGRTLAQAFPEIVGSPLLEVFHRVFASGEPFVTHDYRFD 862

Query: 529  TLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDIS--------------EWKQEKNK 570
                    + L     +  +           +   D++              E ++   +
Sbjct: 863  LERGDGVREELYWSFNLHPMREPGAAVARILVVALDVTDYVRARKKLEAAAREREELLRR 922

Query: 571  LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
               A++ AE+ +  K +FLA + HE+R PL  I+    +++ +  G     R +     I
Sbjct: 923  AEDARRDAERANRAKDEFLAMLGHELRNPLAPIVTALHLMRLRAGGHAERERLV-----I 977

Query: 631  DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
            +R    +  +V+DLLD+S+I  GK+ L  + + + + V++A+ L      ++R  +  + 
Sbjct: 978  ERQIKHLTALVDDLLDVSRITRGKVELKKQRIEIADVVAKAVELASPLLEQRRHHLTVTV 1037

Query: 691  ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
             ++   +  D+  + Q+  N+L+NA  +T SGG+I +        EV L VRD G+G+  
Sbjct: 1038 PSSGLAVEGDVTRLAQVVSNLLTNAAKYTESGGEIAVRAGRVE-GEVALSVRDNGIGIAP 1096

Query: 751  YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFP 809
              L    + F Q   +      G GLGL +   ++  + G+    S    +G+   I  P
Sbjct: 1097 EMLPSVFERFVQERQALDRSQGGLGLGLAIVHNLIAMHGGRVSAHSEGRGRGSEFTIRLP 1156

Query: 810  -LYDTSHPH 817
               D   P 
Sbjct: 1157 AAADVRSPE 1165



 Score =  232 bits (591), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 69/285 (24%), Positives = 115/285 (40%), Gaps = 14/285 (4%)

Query: 543 IIIKKLPFSSCYSLTMHDISEWKQE-------KNKLSHAKKIAEKESSHKSDFLARVSHE 595
           +   +L     Y      I++             +     +      S K+ F + VSHE
Sbjct: 324 VSPHRLLDEP-YRGLFQLITDQVVTAIANARAYEEERRRAEELAAIDSAKTLFFSNVSHE 382

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
            RTPLT ++G  E         L      E+ +   R+   +L +VN LLD S++E G+ 
Sbjct: 383 FRTPLTLMLGPMEDALASPERALCG----EHLSLAYRNALRLLKLVNALLDFSRLEMGRA 438

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715
              ++P  L     +  S  +       +  +         +  D    ++I LN+LSNA
Sbjct: 439 QASYDPTDLAGLTVDLASAFRSAIERAGLAFKVDCPELPEPVFVDRDMWEKIVLNLLSNA 498

Query: 716 IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           + FT  G  +++        +V L VRDTG G+  +EL    + F ++  ++    EG+G
Sbjct: 499 LKFTFDGEILLLLRARED--QVELVVRDTGTGIPEHELPHLFERFHRVQGARARTHEGSG 556

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820
           +GL L   +V  + G     S   +GT   I  P      P + I
Sbjct: 557 IGLALVHELVRLHGGSIRAESRLGEGTAFTIAIPRGSAHLPAERI 601



 Score = 44.2 bits (103), Expect = 0.084,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 53/235 (22%), Gaps = 16/235 (6%)

Query: 99  SEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ-NTWYGKTTL-WPIEGTN 156
           ++     +G      +G    +V   +          +L     TW     L     G  
Sbjct: 88  NDAYRPILGMKHPASVGAPAAEVWAEVWDVVGPMAQGVLDGGPATWSEHLLLPVQRRGFV 147

Query: 157 LYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSS 216
                 L+  PI        G      V               L    +   + K    +
Sbjct: 148 EETYFTLSFSPIPGDAEPVVGV--LITVKETTEQVLDARQLHMLRDLATRSAQAKSAEEA 205

Query: 217 VEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFH 276
                    +  +  P        S L        D        L   E ++ P +    
Sbjct: 206 CCTAAEIFAANDADLP-------FSLLYLLDGDPGDARLVGASGLDGYEGAAKPAR---- 254

Query: 277 TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI 331
            ++L     +     L   ++ S E L         A         PE     P+
Sbjct: 255 -VSLQDRGDEASAWPLAEAARTSGELLVCDLAARFGALPVGRWGSAPEQAIVLPL 308



 Score = 43.9 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 19/250 (7%), Positives = 63/250 (25%), Gaps = 13/250 (5%)

Query: 90   DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQNTWYGKTT 148
                 ++  +  L   +G+    +IG  L      +   P   +   +      +     
Sbjct: 802  GPEHVIEMANPRLVAMVGHR--DVIGRTLAQAFPEIVGSPLLEVFHRVFASGEPFVTHDY 859

Query: 149  LWPI---EGTNLYVPIDLAALPIYSRNREFSG--FRGFGIVHVNRVDNDPRALGKRLDKK 203
             + +   +G    +       P+       +        +    R      A  +  ++ 
Sbjct: 860  RFDLERGDGVREELYWSFNLHPMREPGAAVARILVVALDVTDYVRARKKLEAAAREREEL 919

Query: 204  FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
                 + ++      + K +  +         +   V++L           + E+  +  
Sbjct: 920  LRRAEDARRDAERANRAKDEFLAMLGHELRNPLAPIVTALHLMRLRAGGHAERERLVIER 979

Query: 264  SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
              +      +D   ++     K +        +    + +        S   ++  +   
Sbjct: 980  QIKHLTALVDDLLDVSRITRGKVELKKQRIEIADVVAKAV-----ELASPLLEQRRHHLT 1034

Query: 324  ETVDKCPIPF 333
             TV    +  
Sbjct: 1035 VTVPSSGLAV 1044


>gi|94263712|ref|ZP_01287520.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93455911|gb|EAT06070.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 399

 Score =  297 bits (760), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 71/241 (29%), Positives = 125/241 (51%), Gaps = 10/241 (4%)

Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
           + A+  +  KS+FLA +SHEIRTP+  +IG + ++  +      +     YA  I  SG 
Sbjct: 157 REAQAANIAKSEFLANMSHEIRTPMNGVIGMASLLLAEDL----SDEQRSYAQIIISSGQ 212

Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695
            +L+++N +LD SKIE+G++ L   P S  E + E   L+Q  A  + I + +  +  +P
Sbjct: 213 ALLELINQILDFSKIEAGRLELDCRPFSPRELIQEVAVLLQPQAAAQNITLTSEVSPGVP 272

Query: 696 RIL-ADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNE----EVILRVRDTGVGMT 749
            ++  D   ++Q+ LN++ NAI FT  GG  + +S            +   V+D+G+G+ 
Sbjct: 273 AVVEGDPVRLRQVLLNLVGNAIKFTEVGGVAMELSPAPADPAAPHCSLHFAVKDSGIGIP 332

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             +L+   + F Q+  S   +  GTGLGL + + +++   G+  + S   KG+      P
Sbjct: 333 VEKLDLLFQRFQQVDGSTCRKYGGTGLGLAICRRLMELMGGEIGVKSEEGKGSTFWFTVP 392

Query: 810 L 810
           L
Sbjct: 393 L 393


>gi|229110090|ref|ZP_04239666.1| hypothetical protein bcere0018_23450 [Bacillus cereus Rock1-15]
 gi|228673282|gb|EEL28550.1| hypothetical protein bcere0018_23450 [Bacillus cereus Rock1-15]
          Length = 590

 Score =  297 bits (760), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 89/501 (17%), Positives = 176/501 (35%), Gaps = 41/501 (8%)

Query: 314 YFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                E      +   P+    +  +G+    N    ++T Y + + I     L  L   
Sbjct: 102 LLSRKEEELHTILQNMPVMVDALDYNGDFVLWNRECEIVTGYTAEEIIGNPNALQLLYPD 161

Query: 373 PKLSDNNAIKPVM----LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
                    K +         +      +  + TI W+                      
Sbjct: 162 HNYRHQIQKKFLTCGKNFRDWEMHLTCKNGEIKTIMWSN-----------ISEQFPVTGY 210

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
               +  +    +  + +++ +  +L  I +A  D   +   +G I+         F  P
Sbjct: 211 SYWAVGVDITHLKAIEEQLKQQTSELELIFKALPDLCFLTEDDGTIIDYKAGSPTKFYVP 270

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            E  + K F   L  +        + ++        +E           +         L
Sbjct: 271 AETFMGKKFYEVLPTSVAQQFQEAINQVKEKGTNVIVEYPLTL---NGSIDFFEARCLPL 327

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                  + + DI+E K+ +  L+ +  +A           A V+HE+R PLT I GF +
Sbjct: 328 LHDK-IMIIVRDITERKKTEELLNKSDTLA-----AIGQLAAGVAHEVRNPLTVIKGFIQ 381

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
                    +       Y + +      +  I+ + L I+K +     ++ E  ++    
Sbjct: 382 ------LFQINKEDQERYFDLMLSEIERIEAILQEFLSIAKTD----EINTEKKNIYRIF 431

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
              +SL+   A  K I +     +    I      +KQ+ +NIL N+I   P+GG+I I 
Sbjct: 432 KNVVSLMNTKAIMKNIQVELFTDDKDIIIECSENQLKQVFINILQNSIEAMPNGGEISIH 491

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
               +++ VI+ V D G+G+    +++  +PF         + +GTG+GL L+  +++++
Sbjct: 492 IKEINDDGVIIHVIDEGIGIPEERIKRLGEPFY------STKEKGTGIGLMLSYKIIESH 545

Query: 789 MGKFYIFSTPAKGTLIEIIFP 809
            G   I S    GT + I  P
Sbjct: 546 RGTISIMSEVGVGTTVTIYLP 566


>gi|81299733|ref|YP_399941.1| multi-sensor signal transduction histidine kinase [Synechococcus
           elongatus PCC 7942]
 gi|20270658|gb|AAM18355.1|AF299076_1 sensor kinase NblS [Synechococcus elongatus PCC 7942]
 gi|81168614|gb|ABB56954.1| multi-sensor signal transduction histidine kinase [Synechococcus
           elongatus PCC 7942]
          Length = 664

 Score =  297 bits (760), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 84/394 (21%), Positives = 172/394 (43%), Gaps = 40/394 (10%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           ++  E  +L +++   +DG  +++ +  ++  N A  ++FG+    +        L    
Sbjct: 270 ELTSEKAKLETLVSTIADGALLLDADLNLVLVNPAAIRIFGWEGRSLKGDDVIDHLPSPL 329

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDIS 562
              ++  L  I +   R+ +E       +  + + + +        +     ++T+ DI+
Sbjct: 330 AQELHDPLKAI-ANGDREAVELRLTLPERSNRTVRILVSNVLDTARANVKGIAVTVQDIT 388

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
                            + +  KS F++ VSHE+RTPL  I  F E + +     L    
Sbjct: 389 R--------------EVELNEAKSQFISNVSHELRTPLFNIKSFIETLHD-YGDDLSEEE 433

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             E+ +  +   + +  +VND+LD+S++ES +   +FE + L + + + +   QL A EK
Sbjct: 434 RREFLSTANHETDRLTRLVNDVLDLSRLESNR-RYNFEGIDLVQPIEQTLRTYQLNAREK 492

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN-------- 734
            I +R+  A ++P + A+   + Q+  N++ NA+ FT SGG + +               
Sbjct: 493 GIELRSEIARDLPAVRANYDLLLQVFANLVGNALKFTASGGCVAMRAYLVGQPLRTEAVN 552

Query: 735 --------EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
                     + + + DTG+G+   + E     F ++ N +    EGTGLGL + + +V+
Sbjct: 553 HSEIVSSLPNIRIEINDTGIGIDAEDQEAIFDRFFRVEN-RVHTLEGTGLGLSIVRNIVE 611

Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820
            +  + ++ S    GT      P+Y    P + I
Sbjct: 612 KHQSRIHLISEVGIGTTFWFDLPIY---QPEEAI 642


>gi|329769298|ref|ZP_08260714.1| hypothetical protein HMPREF0433_00478 [Gemella sanguinis M325]
 gi|328839101|gb|EGF88686.1| hypothetical protein HMPREF0433_00478 [Gemella sanguinis M325]
          Length = 615

 Score =  297 bits (760), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 80/401 (19%), Positives = 171/401 (42%), Gaps = 30/401 (7%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKM-EIEVMQLCSILEATSDGIAIINREGIILS 476
               N   E      +  +       ++ + E E  +L +I+E+  DGI   +  G ++ 
Sbjct: 227 VVGINTNDEIGDLAKVFNQISKRIKEEQDVTETERRRLATIIESMMDGIITTDTNGKVIL 286

Query: 477 TNRAVSKLFGYPVED-ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
            N +   +   P  + ++ K     L  +    +   +    SL +  + +   L    E
Sbjct: 287 INTSAGDMIDAPENEILIGKDALKLLNISEYESIGEIIEAEDSLLVNASEDDEGLLLRAE 346

Query: 536 EKLL------SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
              +       L  +  +L     Y + ++D++E ++++ +                 F+
Sbjct: 347 FSKILKEENEDLSQVSTELE---GYIIVLYDVTEQERQERERRE--------------FV 389

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
           + VSHE+RTPLT +  + E ++             ++ + I +    ++ +VN+L+ + K
Sbjct: 390 STVSHELRTPLTTMNSYIEALEEGVIN--DKELAPQFIDTIHKETTRMIRMVNELMQLGK 447

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709
           ++  + +   E + +++ + +     +L   EK              +  D   + Q+  
Sbjct: 448 MDIKEEHYDKEFIDINKLIEQISDRFELTHPEKN--FIKYIPKTPIFVEGDQDKLTQVFD 505

Query: 710 NILSNAIHFTPSGGQIIISTTHT-SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
           NI++NAI ++P+G  I I      ++  V + ++D GVG+    ++K    F ++  S+Q
Sbjct: 506 NIINNAIKYSPNGKNITIRVRQNYNHNRVSISIKDEGVGIPLVHIDKIFNRFYRVDKSRQ 565

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
               GTGLGL LAK +V+A+ G+ +  S    G++I +  P
Sbjct: 566 RTMGGTGLGLALAKNIVEAHRGRIWAQSREGYGSIIFVTLP 606


>gi|284047510|ref|YP_003397849.1| histidine kinase [Acidaminococcus fermentans DSM 20731]
 gi|283951731|gb|ADB46534.1| histidine kinase [Acidaminococcus fermentans DSM 20731]
          Length = 576

 Score =  297 bits (760), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 89/536 (16%), Positives = 205/536 (38%), Gaps = 32/536 (5%)

Query: 277 TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY 336
           + +L       +   L ++ +++    +HR  P ++    EG+               +Y
Sbjct: 68  SPDLRLTWVDTHGTVLYDSFEDATAMPNHRERPEIAQALGEGQGSNARHSATLQE-VTLY 126

Query: 337 SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA 396
           +   L     S L L + ++ D +     L        L      +  +   +       
Sbjct: 127 AAQRLSDG--SVLRLARTQT-DLLRPLEALLPWWLFSLLLLILICQFTVRRLTQGLLDPL 183

Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
                 +    +   +         +          I+ +      + R +E E   +  
Sbjct: 184 EQATRYLSQIGQGDTSEEEKQLFHTSYPELLPFLATIDRQGKQLDQSLRNLEQERNTMKR 243

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP--FTVFLEQNTPSVMNHYLT 514
           I ++  +G+ +++ +  I   N    +L          +P     FL    P      L 
Sbjct: 244 ITDSLKEGVILLDDQMRIQWINAWGFQLLQQEERPTAGRPRILGKFLMPFLPPEARTSLD 303

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-YSLTMHDISEWKQEKNKLSH 573
           ++ +        +     +++     L +   + P       L + DI+E ++ +     
Sbjct: 304 QLRNSRA---WNRTVKYRSRQ---YQLDLQPLEPPQGRASRMLIIQDITEARERE----- 352

Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
                      + DF A V+HE++TPLT+I GF+E++    +          +   I + 
Sbjct: 353 ---------QLRRDFTANVTHELKTPLTSISGFAELMAAGMYQK--KEDITHFGQLIRKE 401

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693
              +L+++N ++ +S+IE        E V L   +   +  +  +  ++++ I      +
Sbjct: 402 AARLLEMINSIIFLSRIEEVPAEALQEEVPLGGLIQSVVEFMDPFCKDRQVTIHCHLTED 461

Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753
             ++      ++++A+N++ N + +   GG + ++      ++V+L V+DTG+G+     
Sbjct: 462 --KVRGSSSMLREMAMNLIDNGVKYNRPGGHVYVTMG-RDGDQVVLTVKDTGIGIPEDVQ 518

Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           E+  + F ++  S+  +  G+GLGL + K +V+ + GK  + S   +GT IE+  P
Sbjct: 519 ERVFERFYRVEGSRSKQSGGSGLGLSIVKHIVEQHRGKIRLTSRVNEGTSIEVQLP 574


>gi|194014588|ref|ZP_03053205.1| sporulation kinase A (Stage II sporulation protein J) [Bacillus
           pumilus ATCC 7061]
 gi|194013614|gb|EDW23179.1| sporulation kinase A (Stage II sporulation protein J) [Bacillus
           pumilus ATCC 7061]
          Length = 609

 Score =  297 bits (760), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 100/501 (19%), Positives = 205/501 (40%), Gaps = 34/501 (6%)

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
           S    +  +   + +   P P  +   G + YAN + L L    + DD+           
Sbjct: 138 SLPAFQHVSEAEQLIAMLPNPLCITILGEIVYANDAMLQLMGVSTRDDMIGKTAFD--FI 195

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
           A +  D    +   L    +  +         +    +S+ +         Q      + 
Sbjct: 196 AEEYHDIVRSRITRL----QQGLPVGMIEQIWKRKDGSSIHIEVKSSPTIYQS--QRAEL 249

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
            +  +    +  +  ++    +   +++ + D IA+I  +   +  N +  KLF     D
Sbjct: 250 LLLVDISSRKKFQTVLQKSRERYQLLIQNSIDTIAVI-HDHKWVFMNESGIKLFEAEHYD 308

Query: 492 -ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP- 549
            ++ K     +       +   ++ I+       +       T + KL+   ++      
Sbjct: 309 KLIGKDIFHQIHSCDQQKVKKSISRIIERASDSEI-VTMSCHTFKHKLIYTEMVCIPTTF 367

Query: 550 -FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
              +   + + DISE KQ +  +  ++K++           A ++HEIR PLTAI GF +
Sbjct: 368 FGETAVQIILRDISERKQTEELMLRSEKLSIA-----GQLAAGIAHEIRNPLTAIKGFLQ 422

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
           +IK     P    R  +Y   +    + +  I+++LL ++K    +     + + L + +
Sbjct: 423 LIK-----PKTKDR-DQYFEIVFSELSRIEIILSELLMLAKP---QQTASMQTLDLKKII 473

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
           SE  +L++  AN   IL+ TS       +  D   +KQ+ +N++ NA+   P GG++ I+
Sbjct: 474 SEVTALLETQANLNGILMNTSEIEEDLLMNGDQNQLKQVFINLIKNAVESMPDGGKVDIT 533

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                +  + + +RD GVG+    +++  +PF         + +GTGLGL +   +++ +
Sbjct: 534 AKAERDG-IHVTIRDEGVGIPESVMKRIGEPFLTT------KEKGTGLGLMVTFNILENH 586

Query: 789 MGKFYIFSTPAKGTLIEIIFP 809
            G   + S P KGT+  I+FP
Sbjct: 587 NGTIRVDSHPEKGTVFHIMFP 607



 Score = 38.9 bits (89), Expect = 3.5,   Method: Composition-based stats.
 Identities = 10/74 (13%), Positives = 28/74 (37%), Gaps = 2/74 (2%)

Query: 93  GYLKEISEELPKTIGNYA-FKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW- 150
           G +   ++ + + +G      MIG    D     + D        L++         +W 
Sbjct: 165 GEIVYANDAMLQLMGVSTRDDMIGKTAFDFIAEEYHDIVRSRITRLQQGLPVGMIEQIWK 224

Query: 151 PIEGTNLYVPIDLA 164
             +G+++++ +  +
Sbjct: 225 RKDGSSIHIEVKSS 238


>gi|117620577|ref|YP_856843.1| PAS, putative [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|117561984|gb|ABK38932.1| PAS, putative [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 1307

 Score =  297 bits (760), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 113/645 (17%), Positives = 217/645 (33%), Gaps = 76/645 (11%)

Query: 202 KKFSHLHEIKKGHSSVEKEK--YDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
           +K   L +      S E +    +++  Q P  + ++                 +     
Sbjct: 378 RKSDTLAQGLAAVQSGEADAMLAELYQLQYPLRNNQLDGLDIRELPQRFGLGFAISHHSP 437

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS----------------------- 296
            L    E SL         +LNQ  ++         S                       
Sbjct: 438 RLAGVMEQSLMAFTSRQNDDLNQRWRRLVLTQQAGVSYGIWLGSVSLALLISAGVIWLIW 497

Query: 297 -KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKY 354
                          +                  P+P F+  + G +   N         
Sbjct: 498 RSRQQLAREVSQRQEMEQTLALESQFRESLFQALPVPVFLRDNQGEIIKRNKQAKR---- 553

Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
                +E        L   +L        +                       +   +  
Sbjct: 554 -----LEARYLAELHLPEAQLQGGEGEMAL----------------------GDQVYSYA 586

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA--IINREG 472
            IP +   Q P               R   R +     +L ++       +   ++ REG
Sbjct: 587 QIPLQLGKQSP--AGDLIALSNISALRERTRLLRQAERRLRALTNTVPGVVIQFLLQREG 644

Query: 473 --IILSTNRAVSKLFGYPVEDILRKPFTVF--LEQNTPSVMNHYLTEILSLDLRQTLEKI 528
              +   +R   +L G   + I R P      L+Q+    M   + E+L      +    
Sbjct: 645 IAQVEFISRGSYELLGLASQQIRRNPGQALGRLDQHDRRKMKAPMLEMLQAGQPFSYALR 704

Query: 529 TLGSTKEEKLLSLRIIIKKLPFSSCYSL--TMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
                K  + L       +      + +   + D++   +++  L  + + AE+    K 
Sbjct: 705 YEHPGKGTRWLQFYGR-GRSQSEQGWRVYGVVQDVTTRVEQEQALQASHERAEQAVLAKG 763

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
            FLA VSHEIRTP+ AI+G  E + +       N        ++ ++G+ +L ++ND+LD
Sbjct: 764 RFLAAVSHEIRTPMNAILGLLEWLSHTSL----NAEQRSALAHVRQAGDELLGLLNDVLD 819

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVK 705
            S+ E+ ++ L  +P  L +      ++    A  KR+ +R    + +P ++  D   V+
Sbjct: 820 FSRNENRQLALSLQPTDLVDLCEHVAAVHWSKARSKRLQLRLDLDHRLPAQVELDPHRVQ 879

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           Q+  N+L+NAI F+  G  ++      +  +++  V D G G++   L +   PF Q   
Sbjct: 880 QVLHNLLANAIKFSSRGEVVL--WARRAGSQLLCGVDDEGPGISAELLPRLFLPFEQGGE 937

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           + Q R +GTGLGL + + +++   G+  +   P  G+      PL
Sbjct: 938 AGQPRAQGTGLGLAICRQLMEQMGGEIRVEPRPTGGSRFLCALPL 982



 Score = 40.0 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 29/324 (8%), Positives = 74/324 (22%), Gaps = 17/324 (5%)

Query: 98  ISEELPKTIGNYAFKMI---GMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEG 154
           IS    + +G  + ++    G  L  +           + ++L+    +           
Sbjct: 651 ISRGSYELLGLASQQIRRNPGQALGRLDQHDRRKMKAPMLEMLQAGQPFSYALRYEHPGK 710

Query: 155 TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214
              ++           R++   G+R +G+V       +     +   ++       K   
Sbjct: 711 GTRWLQFYG-----RGRSQSEQGWRVYGVVQDVTTRVEQEQALQASHERAEQAVLAKGRF 765

Query: 215 SSVEKEKYD-----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
            +    +       I        H  +  +  S   +     D L      +L    +  
Sbjct: 766 LAAVSHEIRTPMNAILGLLEWLSHTSLNAEQRSALAHVRQAGDELLGLLNDVLDFSRNEN 825

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK- 328
            +              +       + ++     L       L A  +   +   + +   
Sbjct: 826 RQLALSLQPTDLVDLCEHVAAVHWSKARSKRLQLRLDLDHRLPAQVELDPHRVQQVLHNL 885

Query: 329 CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388
                   S G +                D      G+S  L                 R
Sbjct: 886 LANAIKFSSRGEVVLWARRAGSQLLCGVDD---EGPGISAELLPRLFLPFEQGGEAGQPR 942

Query: 389 SDRTCIAASARLHTIQWNRENSLA 412
           +  T +  +     ++        
Sbjct: 943 AQGTGLGLAICRQLMEQMGGEIRV 966


>gi|215485481|ref|YP_002327912.1| phosphate regulon sensor protein [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312964579|ref|ZP_07778835.1| phosphate regulon sensor kinase PhoR [Escherichia coli 2362-75]
 gi|215263553|emb|CAS07883.1| sensory histidine kinase in two-component regulatory system with
           PhoB [Escherichia coli O127:H6 str. E2348/69]
 gi|312290813|gb|EFR18690.1| phosphate regulon sensor kinase PhoR [Escherichia coli 2362-75]
          Length = 431

 Score =  297 bits (760), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 73/427 (17%), Positives = 152/427 (35%), Gaps = 37/427 (8%)

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             +L       I     L  + W     L +         +        G+    +  + 
Sbjct: 33  WFLLASVTGLLIWHFWNLLRLSW----WLWVDRSMTPPPGRGSWEPLLYGLHQMQLRNKK 88

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            +R++   + +  S  E+  D + +   EG I   N    ++ G    +   +     L 
Sbjct: 89  RRRELGNLIKRFRSGAESLPDAVVLTTEEGGIFWCNGLAQQILGLRWPEDNGQNILNLLR 148

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
               +               +   +         + L +R++           +   D++
Sbjct: 149 YPEFTQYL----------KTRDFSRPLNLVLNTGRHLEIRVMPYTHKQ---LLMVARDVT 195

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  Q +                + +F A VSHE+RTPLT + G+ E++  Q        +
Sbjct: 196 QMHQLEG--------------ARRNFFANVSHELRTPLTVLQGYLEMMDEQPLEGAVREK 241

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                + +      +  +V  LL +SKIE+   +L  E V +   +       Q  + +K
Sbjct: 242 A---LHTMREQTQRMEGLVKQLLTLSKIEAAPTHLLNEKVDVPMMLRVVEREAQTLSQKK 298

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           +  +     N + ++  +   ++    N++ NA++ TP G  I +      +      V 
Sbjct: 299 Q-TVTFEIDNGL-KVSGNEDQLRSAISNLVYNAVNHTPEGTHITVRWQRVPHG-AEFSVE 355

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G G+    + +  + F ++  ++  +  G+GLGL + K  V+ +  +  I ST  KGT
Sbjct: 356 DNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHAVNHHESRLNIESTVGKGT 415

Query: 803 LIEIIFP 809
               + P
Sbjct: 416 RFSFVIP 422


>gi|217967622|ref|YP_002353128.1| PAS/PAC sensor signal transduction histidine kinase [Dictyoglomus
           turgidum DSM 6724]
 gi|217336721|gb|ACK42514.1| PAS/PAC sensor signal transduction histidine kinase [Dictyoglomus
           turgidum DSM 6724]
          Length = 350

 Score =  297 bits (760), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 81/360 (22%), Positives = 157/360 (43%), Gaps = 26/360 (7%)

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
             +   + E    GI I++++G+++  N  + +LF         +     +       ++
Sbjct: 7   EERWKVLTENVQLGILIVDKDGVVVFANNKIKELFDIQNNSKNNRKLIELIPDY---EID 63

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570
               + L             G  K+     L +    L  +    L ++D +   + +  
Sbjct: 64  DLYKKTLESKTYNKTSLNFWGKEKK----YLEVEAFYLSGNQEVLLIINDYTPLHRMEEN 119

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
                           +FL   SHE+RTPLT+I    ++   ++     +  Y E+  ++
Sbjct: 120 FK--------------EFLGNASHELRTPLTSIQILIDLFSEKKI--TLDEIYNEFFPHL 163

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
            +    +  +V++LL++S++E+G ++L  + V+L E V E I  +  + ++K + +    
Sbjct: 164 RKEVERMSKLVSNLLNLSRLEAGVIDLQLKEVNLTEIVMEVIDRLTPHISKKNLEVNLKI 223

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
              +  I AD + +  I  NI+ NA+ +TP GG I I      +  VIL +RDTG+G+  
Sbjct: 224 PEKL-VINADPQHLDTIVFNIVENAVKYTPQGGLIEIGVNENEDN-VILWIRDTGIGIPE 281

Query: 751 YELEKAMKPFGQIPNSQQIRGE-GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            +L +    F ++  S+       TGLGL + K +++ +     + S   KGT  EII P
Sbjct: 282 KDLNRIFDRFYRVSKSRTNEDGFSTGLGLSIVKKLIERHGWTIRVESKVNKGTKFEIIIP 341


>gi|303241128|ref|ZP_07327637.1| multi-sensor signal transduction histidine kinase [Acetivibrio
           cellulolyticus CD2]
 gi|302591388|gb|EFL61127.1| multi-sensor signal transduction histidine kinase [Acetivibrio
           cellulolyticus CD2]
          Length = 517

 Score =  297 bits (760), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 88/411 (21%), Positives = 186/411 (45%), Gaps = 22/411 (5%)

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNR-AVSK 483
             +    I+    + + +K ++ +   +   ++  T+DG+   +  +  I+        +
Sbjct: 76  AVLLYILIDSSTNEIKKSKDELRVSEERYRLVINNTTDGMWEWDIAKDKIIY--PLEWKR 133

Query: 484 LFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
           L GY  +D          FL  +    M   + E L+  + +  +      TK ++ +  
Sbjct: 134 LLGYKDKDFAGNRTDIERFLHPDDVMEMRDSIWEYLNGKIPK-FKLEIRVKTKIDEYVWA 192

Query: 542 RIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKE-------SSHKSDFLA 590
           +I  + +  +         T+ DI+E K  +  L +  +  +K           K++F  
Sbjct: 193 QIRGQAIWDNEGKPSGMIGTVTDITERKITEVALKNTMEENKKLLNEVIEYDRLKTEFFT 252

Query: 591 RVSHEIRTPLTAIIGFSEVI---KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
            +SHE RTPL  I+   +V+   + +    +   +   Y   + ++   +L ++N+++D+
Sbjct: 253 NISHEFRTPLNVILSVVQVLSIHEKKGEDTVNIEKINRYMKNVRQNCFRLLKLINNIIDV 312

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707
           ++I+SG + L      +   +++ +S V+ + +  ++ I  S       +  D+  V+++
Sbjct: 313 NRIDSGFLKLQLRNEDIVRIINQIVSSVKEFVSVNQLKITFSSNVKQKVMAFDVDKVERL 372

Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
            LN++SN+I FT  GG+I I+  +   + V + VRDTG+G+   +L      F Q+ ++ 
Sbjct: 373 MLNLISNSIKFTKPGGEIFINV-YDLGDLVNISVRDTGIGIEKDKLPIIFARFRQVNSTL 431

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
               EG+G+GL L K++V+ + G   + S P  GT   I FP    S   +
Sbjct: 432 VKDSEGSGIGLSLVKSLVEMHNGDIRVISEPGIGTEFIISFPAKILSDEEN 482


>gi|251781984|ref|YP_002996286.1| two-component sensor histidine kinase [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
 gi|242390613|dbj|BAH81072.1| two-component sensor histidine kinase [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
          Length = 450

 Score =  297 bits (760), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 90/406 (22%), Positives = 165/406 (40%), Gaps = 36/406 (8%)

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDT-RINKRKMEIEVMQLCSILEATSDGIAIINREG 472
            +          E M       +  D  R+    +  E  +L SIL   SDG+   +R G
Sbjct: 55  RYTDMINEKADIELMELADQLNDLSDVFRLTHENLAQEKNRLASILAYMSDGVLATDRSG 114

Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
            I+  N    K      E  L K  T  LE +TP      +         +T        
Sbjct: 115 KIIMINETARKQLNLTKEKALEKNITDLLEGDTPYTYRELV--------SKTPVVTVNSR 166

Query: 533 TKEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
               + ++LR+        S +     + +HD +E ++E+ +                 F
Sbjct: 167 NDMGEFVTLRLRFALNRRESGFISGLVVVLHDTTEQEKEERERRL--------------F 212

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
           ++ VSHE+RTPLT++  + E +     G +       +        N ++ +++DLL++S
Sbjct: 213 VSNVSHELRTPLTSVKSYLEAL---DEGAIKEDIAPSFIKVSLDETNRMMRMISDLLNLS 269

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANE-----KRILIRTSFANNIPRILADLRS 703
           +I++    L  E  +    ++  ++   L  N+     K   I   +      +  D   
Sbjct: 270 RIDNQVTQLSVEMTNFTAFMTSILNRFDLVKNQQTGTGKVYEIVRDYPITSVWLEIDNDK 329

Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
           + Q+  NIL+NAI ++P GG+I +    T   ++I+ + D G+G+   +L      F ++
Sbjct: 330 MTQVIENILNNAIKYSPDGGKITVRMKTTDT-QLIISISDQGLGIPKKDLPLIFDRFYRV 388

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             ++     GTGLGL +AK ++  + G  +  S   KG+   I+ P
Sbjct: 389 DKARSRAQGGTGLGLAIAKEIIKQHHGFIWAKSDYGKGSTFTIVLP 434


>gi|124002054|ref|ZP_01686908.1| sensory box histidine kinase [Microscilla marina ATCC 23134]
 gi|123992520|gb|EAY31865.1| sensory box histidine kinase [Microscilla marina ATCC 23134]
          Length = 749

 Score =  297 bits (760), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 90/673 (13%), Positives = 223/673 (33%), Gaps = 43/673 (6%)

Query: 160 PIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEK 219
            +    +P+   N   +  +G  +              +    K     +  +       
Sbjct: 90  WVRAIGIPV-IENGRVTALQG--LFQDIDKQRTTEEELRYTQGKLKLALDAGEVGIWDWS 146

Query: 220 EKYDIFSQQSP------PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE 273
              +              P    +N +S  T+     D     +   +    ++      
Sbjct: 147 LGDNELQWNQRMHQIFDWPEDCFQNSLSGFTDRLHPDDQEKVVDVLQIALENKTKYDMSY 206

Query: 274 DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD----KC 329
                  N  T       + +        +      +     ++ ++     ++      
Sbjct: 207 RVADQQGNIKTIVAKGAAIYDTEDNPVNMMGTCVDITGQLALEQEKHNVKTQLEIFVKHA 266

Query: 330 PIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388
           P+   ++        A+  +    +      I    G S     P++        +    
Sbjct: 267 PVATAMFDKKLRYLQASDRWYKDYQLPDDSII----GKSHYEIFPEILQMPEWLAIHQRC 322

Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
            +   I  +            +  + +       +  +         +    +  + ++ 
Sbjct: 323 LNGEVIKVNEDSF--LRKSGQTQWLCYEIHPWYTKSGQVGGVVMFTEDITFRKQIEIQLG 380

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
               +  +     + G+A++N +G  L  NR   ++ GY  +++L    T     +  + 
Sbjct: 381 QSEAKFRAAFNQAAIGMALVNMQGKFLRVNRCFCQMLGYSRKELLSLDLTAITHSDDVAK 440

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQ 566
                 E+     R+  E       K+   + + +++  +       +   + DI++ K 
Sbjct: 441 ELKQFQEM-KHGRRRKYEFDKRYCHKDGSTIWVHVVVSLVKDDLKPFFIAQVQDITQRKH 499

Query: 567 EKNKLSHAKKIAEKESSHKSD-----------FLARVSHEIRTPLTAIIGFSEVIKNQRF 615
           ++ +L    K  +++   ++            F   VSH++RTPL +I+GF++    + +
Sbjct: 500 KEQELLELNKFLDEKVVQRTQELLSVNEELEAFNYSVSHDLRTPLRSILGFAQA-LEEDY 558

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
               +    ++   I ++   + ++++ LL +S+I  G+  +  E V++ E V      +
Sbjct: 559 EEELDDVGKDFLRRIMKASKRMSELIDSLLYLSRI--GRRGVVREEVNMSELVESITLNL 616

Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
           Q    ++        A ++ +  ADL  VK +  N+L NA+ ++    + +I     ++ 
Sbjct: 617 QEAFPQQ--SYCYKIAPSV-KAKADLGLVKIVLENLLDNAMKYSSKAHRPVIEFGEIAHN 673

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
           +V   V D GVG     + K    F ++ +      EG G+GL   K ++  + GK +  
Sbjct: 674 KVY-YVADQGVGFDMSYVNKLFGAFQRLHS--TQEFEGMGIGLATVKRIIMKHRGKIWAE 730

Query: 796 STPAKGTLIEIIF 808
           S+P  G       
Sbjct: 731 SSPNSGATFYFTL 743



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 41/390 (10%), Positives = 102/390 (26%), Gaps = 28/390 (7%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTWYGKT 147
           D      + S+   K        +IG    ++   +   P         L  +     + 
Sbjct: 274 DKKLRYLQASDRWYKDYQLPDDSIIGKSHYEIFPEILQMPEWLAIHQRCLNGEVIKVNED 333

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
           +     G   ++  ++   P Y+++ +  G   F                 + + KF   
Sbjct: 334 SFLRKSGQTQWLCYEIH--PWYTKSGQVGGVVMF--TEDITFRKQIEIQLGQSEAKFRAA 389

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLKTEK--YPLL 262
                   ++   +                  K  +S       H DDV K  K    + 
Sbjct: 390 FNQAAIGMALVNMQGKFLRVNRCFCQMLGYSRKELLSLDLTAITHSDDVAKELKQFQEMK 449

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
                     + +   + +          ++++ K  F  ++     +   + ++     
Sbjct: 450 HGRRRKYEFDKRYCHKDGSTIWVHVVVSLVKDDLKPFF--IAQVQDITQRKHKEQELLEL 507

Query: 323 PETVDKCPIPFFVYSHGNLFYANPSFLL---------LTKYKSVDDIEIAGGLSTLLDAP 373
            + +D+      V     L   N               T  +S+     A       +  
Sbjct: 508 NKFLDEK----VVQRTQELLSVNEELEAFNYSVSHDLRTPLRSILGFAQALEEDYEEELD 563

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR--ENSLAMTFIPFEKANQFPENMPQN 431
            +  +   + +   +     I +   L  I         + M+ +         E  PQ 
Sbjct: 564 DVGKDFLRRIMKASKRMSELIDSLLYLSRIGRRGVVREEVNMSELVESITLNLQEAFPQQ 623

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
               +   +   K  + +  + L ++L+  
Sbjct: 624 SYCYKIAPSVKAKADLGLVKIVLENLLDNA 653


>gi|110677757|ref|YP_680764.1| hybrid sensory histidine kinase, putative [Roseobacter
           denitrificans OCh 114]
 gi|109453873|gb|ABG30078.1| hybrid sensory histidine kinase, putative [Roseobacter
           denitrificans OCh 114]
          Length = 733

 Score =  297 bits (760), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 92/414 (22%), Positives = 182/414 (43%), Gaps = 23/414 (5%)

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
           +    ++  ++    E   +      +N       D     +++E    +L   +E  +D
Sbjct: 14  RKLGLHARQLSNEIVETRAEVANVRDENKRV--KSDLSAAHKQIERVERRLWQSIETIND 71

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM-------NHYLTEI 516
           G A  + +  ++  N +   +F    +      +   L+  T   +            + 
Sbjct: 72  GFAFYSPDLELIMANNSYLAVFDGLEDMQPGVSYVTVLQFLTEEGIVNTGDLRPAEWRQK 131

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKK 576
           +   ++    +  +      + + +   I +            +I+   + + KL  A+ 
Sbjct: 132 MIERVQSPEPEAVVIQLWNNEYIRM---IDRRGPDGDIISLGINITAAVRYEEKLEAARA 188

Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
            AE  S  KS FLA +SHEIRTP+  ++G ++V+         +     Y + I  SG  
Sbjct: 189 SAEAASRAKSAFLANMSHEIRTPMNGVVGMADVLTETPL----SEEQRLYVDTIKNSGEA 244

Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP- 695
           +L I+ND+LD SKIE+ K+ LH EP +L++++ E + L+Q  A +K IL+   +A  +  
Sbjct: 245 LLVIINDVLDYSKIEAEKLQLHPEPFNLEKSIHEVLRLLQSIARDKGILLSVDYALFLSS 304

Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-----VILRVRDTGVGMTN 750
             + D   ++QI  N+L NA+ FT  G  + +  +   +E      + +RV DTG+G+  
Sbjct: 305 DFIGDPGRLRQILTNLLGNAVKFTTEGS-VTVRVSGKPDEATGKVILQIRVEDTGIGIPE 363

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
             ++     F Q+ + +  + +GTGLGL + K ++    G+ ++ S    G+  
Sbjct: 364 DMIDHVFGEFNQVESERNRQFDGTGLGLAITKKLIKMMNGQIWLTSEEGVGSCF 417


>gi|189347431|ref|YP_001943960.1| multi-sensor hybrid histidine kinase [Chlorobium limicola DSM 245]
 gi|189341578|gb|ACD90981.1| multi-sensor hybrid histidine kinase [Chlorobium limicola DSM 245]
          Length = 1397

 Score =  297 bits (760), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 100/585 (17%), Positives = 197/585 (33%), Gaps = 83/585 (14%)

Query: 306  RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAG 364
            R   +      E        V+      + ++   N  + +P + ++  Y          
Sbjct: 544  RGVINRERELIESRERYMLAVNGSNDGIWDWNLKSNALFLSPKWKMMIGYYDDTVSPDTY 603

Query: 365  GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
                  +     D+       L +  +  +   +          + + +        ++ 
Sbjct: 604  DA---FEDRLHPDDKEPYRRHLQQYLKGELPVFSTEFRFLHRNGSYMWILGKGEALRDKQ 660

Query: 425  PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA-----IINREGIILSTNR 479
                   G   +    +    ++         +L   + G        ++      S NR
Sbjct: 661  GMPYRMAGSFSDITSRKKAGEELMHRSA-FQLVLMELAIGFVNKPLEELDS-----SINR 714

Query: 480  AVS---KLFGYPVEDILRKPFT-------VFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
            A++            + R  F                S     L  I +  L   +    
Sbjct: 715  ALALVGAFLNVDRTYLFRYDFEKETMSNTHEWCSEGISAEKDNLQNIPNSSLPDWVFTHL 774

Query: 530  LGST---KEEKLLSLRIIIKKLPFSSCY-------------------------------- 554
             G        + L     +K +                                      
Sbjct: 775  KGRIIHIPNVQELPEDSSLKSILELQGIQSLISLPLVYGEQCFGFAGFDAVREKKNWGDE 834

Query: 555  -SLTMHDISE-------WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
                +  ++E         + +  L  A+  AE  +  KS+FLA +SHEIRTP+  +IG 
Sbjct: 835  EISLLRVLTELFTNAELRYRHETALLDARLAAEAANRAKSEFLANMSHEIRTPMNGVIGM 894

Query: 607  SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
            + ++ N             +A     SG  +L ++ND+LD SKIE+GK+ L      L  
Sbjct: 895  TRLLLNTSLA----EEQRSFAQTALASGESLLTVINDILDFSKIEAGKLELEEISFDLRL 950

Query: 667  AVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQ- 724
             + +  +++ + A +K +    +   ++P R + D   ++QI  N+  NA+ FT  G   
Sbjct: 951  LLDDFAAIMAVKAGDKGLEFICAALPDVPVRFIGDPDRIRQILTNLAGNAVKFTHKGEVA 1010

Query: 725  IIISTTHTSNEEV--ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
            + +S    ++EEV     V+DTG+G+   +L++  + F Q+  S   +  GTGLGL +++
Sbjct: 1011 VYVSLLRETDEEVLVRFSVKDTGIGIPREKLDRLFRSFTQVDASMTRKYGGTGLGLAISR 1070

Query: 783  AMVDANMGKFYIFSTPAKGTLIEIIF-------PLYDTSHPHDCI 820
             +V+   G+  + S    G+             P  +  +P D I
Sbjct: 1071 QLVELMSGEIGVNSQSGIGSEFWFTLSLKKNIFPSENGQYPLDSI 1115


>gi|77917797|ref|YP_355612.1| two component signal transduction histidine kinase/response
           regulator hybrid [Pelobacter carbinolicus DSM 2380]
 gi|77543880|gb|ABA87442.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter carbinolicus DSM
           2380]
          Length = 749

 Score =  297 bits (760), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 81/550 (14%), Positives = 179/550 (32%), Gaps = 55/550 (10%)

Query: 287 QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYAN 345
             F      +  + +        +        E      V+        +     L + N
Sbjct: 95  PIFDEAGELTMVAEQLCDINQRKAALENLHASERQYRTLVESQIDLVCRWQPDTTLTFVN 154

Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405
            ++         + +    G   L + P+    +    V     +        +++  + 
Sbjct: 155 SAYCRFFGKTRAELL----GTRFLDNCPQEFRPDLAAHVASQAQNPRLEVVEVKVYDTK- 209

Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA--TSD 463
                   ++      ++    +    +  +    ++    +     +     E   T D
Sbjct: 210 --GRIRWQSWCDCPIFDEQGRLVEFQSVGRDITKEKMALEHLRETQTRYRHFFENDLTGD 267

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVED--ILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
            +  I+  G ++  N A  ++FG+      + +  F +F     P +    L +      
Sbjct: 268 FVVGID--GQLVDCNPAFLRIFGFDSRQQALEKDFFELFFHGKDPGIFFEILQQ-----Q 320

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS----LTMHDISEWKQEKNKLSHAKKI 577
           ++       G   +   L L   +                + D ++ K  + +  HA+K+
Sbjct: 321 KKMEYCDIEGCKCDGSPLQLIANLLGQFNEEGQLTGIEGFLFDNTDLKNLQKQFLHAQKM 380

Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
                         V+H+    LT I G+S+ +  +      +         I ++G   
Sbjct: 381 -----EAMGRLAGGVAHDFNNLLTVISGYSQYLLQKY----SDEALQGCLEQIVKAGEQA 431

Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697
             + + LL  S+    +  +  + + L+   ++   ++        + +       +  +
Sbjct: 432 ASLTSQLLAFSR----RQVMQTKEMDLNGVTADMEKML-HRILGADVDLVVLRDPRLGLV 486

Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIIST--------------THTSNEEVILRVRD 743
            AD   ++Q+ +N+  NA    P GG++ I T                     V++ V D
Sbjct: 487 NADRGQIEQVIVNLAVNARDAMPEGGKLTIETINIELDEIYSTWHTGLAPGHYVMMSVTD 546

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TG+GM    + K  +PF     +    G+GTGLGL     +V  + G  Y++S P  GT 
Sbjct: 547 TGIGMDPEIMGKIFEPFYTTKET----GKGTGLGLSTVYGIVQQSGGHIYVYSEPGMGTT 602

Query: 804 IEIIFPLYDT 813
            +I  P  D+
Sbjct: 603 FKIYLPRVDS 612



 Score = 86.6 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/280 (10%), Positives = 73/280 (26%), Gaps = 21/280 (7%)

Query: 319 ENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
           + L  +  D   +   V  +  L   N  +     Y   D          +    +    
Sbjct: 8   QRLFSDISDLLAV---VDRNHRLVMCN--WRGGYDYVPEDKRTGQPHCYEVFYPGQNGPC 62

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
                + ++R+    +        +         +    F   ++  E         +  
Sbjct: 63  QPCHVMEVFRT-GKPLVTEKYNARV-------GHLEVRCFPIFDEAGELTMVAEQLCDIN 114

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
             +     +     Q  +++E+  D +     +  +   N A  + FG    ++L   F 
Sbjct: 115 QRKAALENLHASERQYRTLVESQIDLVCRWQPDTTLTFVNSAYCRFFGKTRAELLGTRFL 174

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL-- 556
               Q     +  ++         + +E        + ++         +       +  
Sbjct: 175 DNCPQEFRPDLAAHVASQAQNPRLEVVEVKVY--DTKGRIRWQSWCDCPIFDEQGRLVEF 232

Query: 557 --TMHDISEWKQEKNKLSHAKKIAEK--ESSHKSDFLARV 592
                DI++ K     L   +       E+    DF+  +
Sbjct: 233 QSVGRDITKEKMALEHLRETQTRYRHFFENDLTGDFVVGI 272



 Score = 48.1 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/147 (11%), Positives = 37/147 (25%), Gaps = 9/147 (6%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI-LHIDPNNHIGDLLKRQNTWYG 145
           W       L  ++    +  G    +++G R  D        D   H+    +       
Sbjct: 144 WQ--PDTTLTFVNSAYCRFFGKTRAELLGTRFLDNCPQEFRPDLAAHVASQAQNPRLEVV 201

Query: 146 KTTLWPIEGTNLY-VPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
           +  ++  +G   +    D    PI+        F+  G       +       +    ++
Sbjct: 202 EVKVYDTKGRIRWQSWCD---CPIFDEQGRLVEFQSVG--RDITKEKMALEHLRETQTRY 256

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPP 231
            H  E       V      +       
Sbjct: 257 RHFFENDLTGDFVVGIDGQLVDCNPAF 283



 Score = 40.4 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/141 (12%), Positives = 41/141 (29%), Gaps = 11/141 (7%)

Query: 454 LCSILEATSDGIAIINREGIILSTN-RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
              +    SD +A+++R   ++  N R                 + VF           +
Sbjct: 7   YQRLFSDISDLLAVVDRNHRLVMCNWRGGYDYVPEDKRTGQPHCYEVFYPGQNGPCQPCH 66

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH----DISEWKQEK 568
           + E+         EK         ++  L +    +   +     +     DI++ K   
Sbjct: 67  VMEVFRTGKPLVTEKY------NARVGHLEVRCFPIFDEAGELTMVAEQLCDINQRKAAL 120

Query: 569 NKLSHAKKIAEKESSHKSDFL 589
             L  +++        + D +
Sbjct: 121 ENLHASERQYRTLVESQIDLV 141


>gi|119491243|ref|XP_001263210.1| sensor histidine kinase/response regulator, putative [Neosartorya
            fischeri NRRL 181]
 gi|119411370|gb|EAW21313.1| sensor histidine kinase/response regulator, putative [Neosartorya
            fischeri NRRL 181]
          Length = 1938

 Score =  297 bits (760), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 103/682 (15%), Positives = 216/682 (31%), Gaps = 85/682 (12%)

Query: 199  RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
             L+   S     +    +V+       S+       + +NKVS   +  A          
Sbjct: 792  ALNSGESPGPAARGNSEAVDSYFNVHSSKSLRGAINQHRNKVSKSKKLAASTPTSPGRIW 851

Query: 259  YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
                  EE S  +        L            Q  S       S  +           
Sbjct: 852  ENRSVDEELSAQDPNIVVASPLQDSKVPPVISPTQG-SNRHPSTNSIYSQLQREIPRPFS 910

Query: 319  ENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
            + +    ++  P+  F+     G + + N  F    + +  +        +         
Sbjct: 911  DTVAQLMLNSVPLHLFLAKPQSGEVIWTNSKFDAYRRSQPQEQKSRDPWQN----IHPDE 966

Query: 377  DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
             ++  +         +      R+     +        F      +   E +   G   +
Sbjct: 967  RDHISREWANALRTGSQFTERVRVKRF-NDDSAYRWFIFRANPLLSSTGEVLYWIGSFLD 1025

Query: 437  DVDTRINKRKMEIEVMQL------CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490
              +  + + K   E  +        +   +    +        ++  N       G  +E
Sbjct: 1026 IHEQHVAELKAAQERQKFAIDAKYRAFSNSIPQVVFEATEHRGLIFVNEQWHLYTGQKLE 1085

Query: 491  DILRKPFTVFLEQNTPSV-----------------------------------------M 509
            + L   F   +  +                                             +
Sbjct: 1086 EALNFGFAKHVHPDDLEKCGSLSVYIADLQNKAPADSTGKDGCAGKEKAGTPGRQFSQGV 1145

Query: 510  NHYLTEILSLDLRQT---------LEKITLGSTKEEKLLSLRIIIKKLP------FSSCY 554
               L E++ L +                    +K        + + ++         + +
Sbjct: 1146 TPALAELVRLGIASVQKDENGRVFYSTEIRLRSKGGDYRWHLVRLVRVETSSFGSGEASW 1205

Query: 555  SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
              T  DI++ K  + +L+ A +    +   K+ F + +SHEIRTPL  I+G    I + +
Sbjct: 1206 YGTCTDINDRKNLERELNKAMQQLNNQMESKTKFFSNMSHEIRTPLNGILGTIPFILDTQ 1265

Query: 615  FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                         + I  S   + ++V+++LD+S++E+GKM+L      +   V + I  
Sbjct: 1266 LDT----DQRRMLDTIQNSSTNLRELVDNILDVSRVEAGKMSLVNSWFHVRSVVEDVIDT 1321

Query: 675  VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
            +   A +K + +      N+P  ++ D   ++Q+ +N++ NA+ FT  G ++ IS     
Sbjct: 1322 ISSRALDKGLELNYLMDVNVPPMVIGDRFRIRQVLINLVGNAVKFTAQG-EVHISCGIYR 1380

Query: 734  NEEV---------ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
            +  V            V DTG G +  + E+ M+ F Q+  +   +  G+GLGL L+K +
Sbjct: 1381 DASVPLKETELLLNFDVVDTGKGFSARDAERLMQRFSQLGENASQQNAGSGLGLFLSKQL 1440

Query: 785  VDANMGKFYIFSTPAKGTLIEI 806
            V+ + G+    S   +G     
Sbjct: 1441 VEMHGGRLTPSSKEGQGATFSF 1462


>gi|312794584|ref|YP_004027507.1| multi-sensor signal transduction histidine kinase
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312181724|gb|ADQ41894.1| multi-sensor signal transduction histidine kinase
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 565

 Score =  297 bits (760), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 76/375 (20%), Positives = 156/375 (41%), Gaps = 60/375 (16%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            ++E E  +L  IL+  SDG+  +N +  I+  N +  +                     
Sbjct: 239 SELEFEKQKLERILQNMSDGVLAVNSKNEIIHINESAKRFL------------------- 279

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR-IIIKKLPFSSCYSLTMHDISE 563
               +  +L  + S       ++I      +   L +           +     +HDI++
Sbjct: 280 -KGDVERFLEHVQSDKDWCVTQRIYEV---DGWTLEVSTASFIDSYQGTGTIFILHDITQ 335

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             +                  +  F+A VSHE+RTP+T I  +SE + +     + +   
Sbjct: 336 QAKL--------------DRMRKQFVADVSHELRTPITTIKTYSETLLD-----VDDETV 376

Query: 624 IE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
            + + N I +  + +  +++DLL +S+++SG+  L  E V++ E V      ++++A +K
Sbjct: 377 KKKFLNVIIKECDRMTRLISDLLYLSRLDSGENILKIEEVNISELVRFVCEKMRIHAKKK 436

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
              +  S   N+  I AD   ++Q+ +N+++NA+ +   GGQI +       E V + V+
Sbjct: 437 NQKLLCSTQENV-VIEADRDRLEQVLINLINNAVVYVQEGGQIEVGLE-KDEEHVRITVK 494

Query: 743 DTGVGMTNYELEKAMKPFGQIPNS-------QQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
           D G G+   +L +  + F ++  +         +          +A  +V A+ GK  + 
Sbjct: 495 DNGPGIPEEDLPRIFERFYRVDKARSRSLGGSGLGLS-------IADEIVKAHGGKILVE 547

Query: 796 STPAKGTLIEIIFPL 810
           S    GT   ++ P+
Sbjct: 548 SKEGVGTKFTVVLPI 562


>gi|284038430|ref|YP_003388360.1| PAS/PAC sensor signal transduction histidine kinase [Spirosoma
           linguale DSM 74]
 gi|283817723|gb|ADB39561.1| PAS/PAC sensor signal transduction histidine kinase [Spirosoma
           linguale DSM 74]
          Length = 541

 Score =  297 bits (760), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 93/522 (17%), Positives = 186/522 (35%), Gaps = 55/522 (10%)

Query: 331 IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390
           I  +  +       N     +  + S   +      S  L    LSD +    +   R  
Sbjct: 22  IGIYDLNEERFVRVNEVGARMLGFVSEAAMLADPIRSRSLRFQPLSDEDRATLITQIR-- 79

Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450
                    +   + +      +       +    E         +       +R++E  
Sbjct: 80  -QTNHFEEMIQVGRQDGRP---LMGRLVINSFAENEQAYALIRLIDQARLVQAERELEHS 135

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
           V +  +I  + + GI + +++G I+S N+  ++LFGY  ++++       +         
Sbjct: 136 VRRYEAIFSSATIGIIVCDKQGAIVSANQLANQLFGYTTDEMMALTIEQLVPTRISHYHE 195

Query: 511 HYLTEILSLDLRQTL--EKITLGSTKEEKLLSLRIIIK--KLPFSSCYSLTMHDISEWKQ 566
                       + +   +      K+  +  + + +   +L         + D +  K+
Sbjct: 196 KLRQSFNESPQVRAMGHNRDLNAQRKDGSVFPVEVSLSYFRLEDELYAVAYIIDSTFKKE 255

Query: 567 EKNKLSHAKKIAEKES---------------------------------------SHKSD 587
            + +L   +   E+ +                                         KS 
Sbjct: 256 AERQLLTHRDDIERLNADLEQKVVDRTHALMNTLDQLEQSKDELARALAVERELGELKSR 315

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           F+A  SHE RTPLTA++  +  +  +        +  ++   I  S N + DI+ + L +
Sbjct: 316 FVAMASHEFRTPLTAVLTSA-TLIEKYTTSDQQDKREKHLMRIRASVNHLNDILEEFLSV 374

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707
            K+E GK+  H   + L + V E I+ ++  A +    I+T        I  D   +++I
Sbjct: 375 GKLEEGKVETHPIEIDLAKLVDETITDMRS-ALKPGQTIQTHIDCT-GTIWIDPSMLRKI 432

Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
            +N+LSNA+ ++     + +  T +    + L + D GVG+   + E   + F +  N  
Sbjct: 433 LVNLLSNAVKYSGLDSVVSLWATCSEAN-LKLVIEDQGVGIAKEDQEHLFERFFRARNVT 491

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            I   GTGLGL +    VD   G   + S   KGT + +  P
Sbjct: 492 NIA--GTGLGLHIVGRYVDLMGGTITLTSELNKGTTLILNLP 531


>gi|153010009|ref|YP_001371224.1| integral membrane sensor signal transduction histidine kinase
           [Ochrobactrum anthropi ATCC 49188]
 gi|151561897|gb|ABS15395.1| integral membrane sensor signal transduction histidine kinase
           [Ochrobactrum anthropi ATCC 49188]
          Length = 614

 Score =  297 bits (760), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 90/357 (25%), Positives = 172/357 (48%), Gaps = 8/357 (2%)

Query: 460 ATSDGIAIINREGII--LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
           A  D    ++ +G++  +  N A  KL G   + +        +           L ++ 
Sbjct: 205 AAGDLQFSLDSDGVVASVDMNSA--KLLGVQSKMLEGTALIDRVHVADRVEYLSLLADLR 262

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI 577
           +      ++         + +      ++    +   +L    +   ++  ++++  K  
Sbjct: 263 AGSASSKVDVRLRSIENGDTVFR-TYRLEGAASARAITLVGRSLEGEQKLLDEIATLKAE 321

Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
            E E   K   LA VSHE+RTPL +IIGFS+++ ++  G L N +  EYA  I +SG+ +
Sbjct: 322 LESERIGKGRLLAAVSHELRTPLNSIIGFSDMLSHEMGGKLANEKQREYAGLIHQSGHYL 381

Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697
           L++VN +LD S++E+G  ++  +  +  +A     S++   A +K +         I  +
Sbjct: 382 LELVNAVLDNSRLETGNYSIDPQNFAFRDAAEMCTSVMLPQAEKKGVAFCHRVGAGIGEL 441

Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIII---STTHTSNEEVILRVRDTGVGMTNYELE 754
           +AD R+++QI LN+ SNA+ FT SGG + I       +    + + V DTG+G+   +++
Sbjct: 442 VADRRAIQQILLNLASNAVKFTQSGGCVTIDATRVMASGRAMLEISVSDTGIGIEPEDMQ 501

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
           +   PF +  N+     EG+GLGL + K +V+ + G   + S P +GT++ I  P+ 
Sbjct: 502 RIGTPFVRADNNYTRAQEGSGLGLSVVKGLVELHQGSMQLKSCPGEGTIVTIRLPVA 558


>gi|82703350|ref|YP_412916.1| PAS/PAC sensor signal transduction histidine kinase [Nitrosospira
           multiformis ATCC 25196]
 gi|82411415|gb|ABB75524.1| PAS/PAC sensor signal transduction histidine kinase [Nitrosospira
           multiformis ATCC 25196]
          Length = 433

 Score =  297 bits (760), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 78/401 (19%), Positives = 149/401 (37%), Gaps = 33/401 (8%)

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPED-VDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469
             +        +                 D +   + +   + +L S   A  +G+ I++
Sbjct: 54  RWLRSEEAVLPDSSGRWGDVFARLARLMRDQKQTHQNLSSALERLRSATSAMPEGVVILD 113

Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
               I   N    K  G        +  T  + Q   +               +  ++  
Sbjct: 114 EMDRIEWCNPVAEKHLGINASLDTGQHITHLMRQTQFAEYLAA----------RNYKEPL 163

Query: 530 LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
           +     +  L+L +            L+  DI++ ++ +                + DF+
Sbjct: 164 VIKQPRQHELTLSLQFVPYGDKQKLLLS-RDITKLERIQT--------------MRRDFV 208

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
           A VSHE+RTPLT I GF E + +                 +      +  +V DLL +S+
Sbjct: 209 ANVSHELRTPLTVIGGFLETLSDDNQP--DPDTRKWALELMSEQTRRMQSLVEDLLTLSR 266

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEK-RILIRTSFANNIPRILADLRSVKQIA 708
           +E+ +  +  E V++ E +       +  +    RI +       +   L D   ++   
Sbjct: 267 LENTENQVREEHVNIPEMLRTLYEEAKSLSGGHHRITLELDTTTKLLGNLFD---LRSAF 323

Query: 709 LNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
           +N++SNAI +TP GG I +       + V   V+DTG+G+    + +  + F ++   + 
Sbjct: 324 INLISNAIRYTPDGGNITLRWAIQDGKGV-FSVQDTGIGIEPEHISRLTERFYRVDRGRS 382

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
               GTGLGL + K ++  +  K  I S P KG+    +FP
Sbjct: 383 RETGGTGLGLAIVKHVLSGHQAKLEITSEPGKGSRFSAVFP 423


>gi|78221304|ref|YP_383051.1| histidine kinase [Geobacter metallireducens GS-15]
 gi|78192559|gb|ABB30326.1| histidine kinase [Geobacter metallireducens GS-15]
          Length = 661

 Score =  297 bits (760), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 75/261 (28%), Positives = 123/261 (47%), Gaps = 17/261 (6%)

Query: 559 HDISEW-----KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
           HD +       ++  N L  ++  AE  S  K +FLA +SHEIRTP+ AIIG +E+    
Sbjct: 247 HDETHQVLHTIERMVNDLKRSRDEAESASRMKGEFLANMSHEIRTPMNAIIGMTELTLET 306

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
              P       E    I  S   +L ++ND+LD S+IE+G++ L   P  L   V  A+ 
Sbjct: 307 PLSP----SQRENLEIIGSSAESLLGLLNDILDFSRIEAGRLLLEKVPFDLRNTVEGALD 362

Query: 674 LVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH- 731
           +V   A+ K + +    A ++P   + D   ++Q+ +N+LSNA+ FT  G ++ +     
Sbjct: 363 VVAPQAHGKGLELILDVARDLPEAFIGDPTRLRQVLINLLSNAVKFTAKG-EVGLKVERA 421

Query: 732 -----TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
                     ++  V DTG+G+   +L    + F Q   S   +  G+GLGL + +A+V 
Sbjct: 422 PSSGTDDGVMLLFTVSDTGIGIPADKLSLIFESFTQADGSTTRKYGGSGLGLAICRALVS 481

Query: 787 ANMGKFYIFSTPAKGTLIEII 807
              G   + S    G+     
Sbjct: 482 MMGGDISVKSAVGVGSTFRFT 502


>gi|253700986|ref|YP_003022175.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
            M21]
 gi|251775836|gb|ACT18417.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
            M21]
          Length = 1146

 Score =  297 bits (760), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 118/826 (14%), Positives = 242/826 (29%), Gaps = 138/826 (16%)

Query: 76   FDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMR--LCDVSDILHIDPNNHI 133
            F      VR     +    ++ IS       G    + +     L  V      D    I
Sbjct: 371  FTSELAIVR-----NPDASIRYISANCLALTGYTDREFMEKPELLEAVIHPSDAD----I 421

Query: 134  GDLLKR---QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVD 190
                      N       L   +G + +         + S +  + G RG          
Sbjct: 422  WRAHCTPPCGNEVDFNLRLLTKQGESRWFSYT--CHAVTSPDGAYLGVRG--SFRDISHR 477

Query: 191  NDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSS------ 242
                       +   +L E       V  + + +         L     + V        
Sbjct: 478  VMLEQQLCDQREFARNLLESTSTPLFVIDQDHKVIVWNKALSELTGIPSSDVIGTNRHWR 537

Query: 243  --LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS---- 296
                E      D L   +   +   E               +       G  +       
Sbjct: 538  AFYLEPQPTLGDFLVELRPEEVGDLEGRFERVAVQRGNLQAERWFNTINGERRRLLANAS 597

Query: 297  -----KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLL 350
                  E    +   +  +     ++   L  + V++      ++   G + Y N  F  
Sbjct: 598  QVYRDGEVVAVVETLHDITARTQAEQSLRLLAQAVEQTASSILIHDLQGEMTYVNNKFCQ 657

Query: 351  LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
            +T Y   + +     +         ++      +              +    +    + 
Sbjct: 658  VTGYSREETLGKKIVM-------LKTEPKVFDEICRTTKCGQPWHGELQS---RRKDGSL 707

Query: 411  LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL---------------- 454
                      A+          ++ +  D +  +  ++ +  +L                
Sbjct: 708  FWERATISPIADDKGAISHYLAVKEDITDAKEVEYLLKQQQAELLLKHEQLSELFVQVEK 767

Query: 455  -----CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
                    ++   D +A++ ++G I   NRA  +       D+L + + + L +      
Sbjct: 768  AKREWEQTMDCVDDMVALVEKDGSIRRCNRAFMQFVNCGYNDLLSRNWRMLLTKTGLD-- 825

Query: 510  NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN 569
                  +      Q L + T           L +            +T+HD++E K+   
Sbjct: 826  ------LDGHGEGQFLHQPTQR--------WLALKTYTWDAEQAKVITLHDLTEVKRVSE 871

Query: 570  KL---------SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN-------- 612
            +L         +H++ + +++ +      A V+HEI  P+  I      ++         
Sbjct: 872  QLVTAYQELKATHSQLLQQEKMASIGQLAAGVAHEINNPMGFISSNLSTLEKYLERISSF 931

Query: 613  --------------QRFGPLGNPRYIEYANYIDR-----------SGNLVLDIVNDLLDI 647
                          +    L   R     +YI +             N V  IV +L   
Sbjct: 932  ITLQSAKVMPNATAEVLAELTQARQTLKVDYILQDAPDLVAESMDGANRVRKIVQNLKTF 991

Query: 648  SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707
            S+++    +     V L++ +   +++       K   +   +   +P +      + Q+
Sbjct: 992  SRVD----DAETMYVDLNDCLESTVTIAWNELKYKT-TLNRDY-GELPPVKCFPHQLNQV 1045

Query: 708  ALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
             LNIL NA H     G++ I+T     E V + + DTG G+ +   E+  +PF       
Sbjct: 1046 FLNILVNAAHAIEVQGEVTITTRCL-GETVKVTISDTGCGIPDEIKERIFEPFFTTK--- 1101

Query: 768  QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
               G+GTGLGL ++  +V  + G   + STP KGT   ++ P+  T
Sbjct: 1102 -EVGKGTGLGLSISYDIVKKHGGSIEVKSTPGKGTTFSVVLPVEGT 1146


>gi|169830174|ref|YP_001700332.1| two-component sensor histidine kinase [Lysinibacillus sphaericus
           C3-41]
 gi|168994662|gb|ACA42202.1| two-component sensor histidine kinase [Lysinibacillus sphaericus
           C3-41]
          Length = 566

 Score =  297 bits (760), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 82/409 (20%), Positives = 166/409 (40%), Gaps = 26/409 (6%)

Query: 403 IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT-RINKRKMEIEVMQLCSILEAT 461
           ++   +      +    +     E            +  +  +   + E  +L S+L   
Sbjct: 169 MRKQAQAMAKGNYSRKVRVYGTDEIGQLAVTFNHLTNRLQEAQSTTDAERRKLDSVLSNM 228

Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
           +DG+   +R+G I+  N    +L     +  L +P    L  +        +    +++L
Sbjct: 229 TDGVIATDRKGRIILINDPALQLLHISRDITLGRPIASVLGIDQEYSFEDLIHMSDAINL 288

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE 581
             +                  +I K+  F +     +HDI+E ++ +             
Sbjct: 289 NFSTSDAPYILRAN-----FSVIQKETGFINGLITVLHDITEQEKIEMD----------- 332

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI-EYANYIDRSGNLVLDI 640
              + +F++ VSHE+RTPLT +  + E + +   G   +      + N        ++ +
Sbjct: 333 ---RREFVSNVSHELRTPLTTMRSYLEALAD---GAWKDENIAPTFLNVTQTETERMIRL 386

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILAD 700
           VNDLL +S+++S    L+ + V  +   +  I   ++  ++K +     F      +  D
Sbjct: 387 VNDLLQLSRMDSSDYELNKDIVLFNSFFNRIIDRFEMSKSDK-VQFARLFPETSFYVEID 445

Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760
              V Q+  NI+SNAI ++P GG I    T    + + + + D G+G+    + +    F
Sbjct: 446 TDKVTQVIDNIISNAIKYSPDGGNIRFGFTGQ-GDMLKVMISDDGMGIPKENVGRIFDRF 504

Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            ++  ++     GTGLGL +A+ M++A+ GK +  S   +GT I    P
Sbjct: 505 YRVDRARARSMGGTGLGLAIAREMIEAHGGKIWAESEEGQGTTIFFTLP 553


>gi|183219905|ref|YP_001837901.1| putative two-component sensor protein [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|167778327|gb|ABZ96625.1| Putative two-component sensor protein [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
          Length = 596

 Score =  297 bits (760), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 100/476 (21%), Positives = 187/476 (39%), Gaps = 47/476 (9%)

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
           L  L    K     A    +L   +        R    +++      +        ++  
Sbjct: 56  LVRLYAIQKEPKFKAYFQRILEIRNG------VRPRPNEYDYAYWDLVIADQLPPPSEEG 109

Query: 426 ENMPQNGIEPED--VDTRINKRKMEIEV-MQLCSI-LEATSDGIAIINREGIILSTNRAV 481
           E +       +   +++      +  E   QL  I  E+ S    +I+RE     +N   
Sbjct: 110 EKISILDAMKQAGFLESDFLLLSLSKEKSDQLTKIEFESMS----MIDRELKTGKSNPKA 165

Query: 482 SKLFGYPVEDI-----LRKPFTVFLEQNTPSVMNHYLTEILS--------------LDLR 522
             +  +  + +     + KP      Q         L                     + 
Sbjct: 166 VAIL-FDDQYLKFKAEIMKPINDLYHQLDDRTTQAILDAKEKVFFLRTVLILSGIVFGIS 224

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHD----ISEWKQEKNKLSHAKK 576
                 +L S     +  +  +I  L           ++D    ++     + +L    +
Sbjct: 225 LYFTHRSLVSIMGGSVDEVFRLISLLGEGKFTGDIQILNDNKTILNSLNTTQKRLQELYE 284

Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
             E  S  KS+FLA +SHEIRTPL  +IG ++++         +     Y   I  +G  
Sbjct: 285 KTEMASRAKSEFLASMSHEIRTPLNGVIGITQILFETDL----DAEQKSYLKTIADAGKA 340

Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696
           +L+I+ND+LD SKI++GK+ +   P  L   V E   L  + AN K++  +     ++P 
Sbjct: 341 LLNILNDILDFSKIDAGKLTIQKTPFHLANLVREIFDLFAIEANTKQLEFKFEINPDVPE 400

Query: 697 ILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755
           ++  D   ++QI  N++ NAI FT +G  +I+S     +  ++ +++D+G+G++  +L  
Sbjct: 401 VIVSDPSRIRQILFNLIGNAIKFTETGF-VILSIKKEEH-SILFQIKDSGIGISYEKLTS 458

Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
             + F Q+  S   +  GTGLGL +++ +V    GK  + S    G+     FPL 
Sbjct: 459 LFQKFSQVDTSTSRKYGGTGLGLAISERLVGLLEGKIGVESVKGVGSTFWCSFPLS 514


>gi|189910030|ref|YP_001961585.1| two component response regulator sensor histidine kinase/response
           regulator subunits [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167774706|gb|ABZ93007.1| Sensor histidine kinase and response regulator of a two component
           complex [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
          Length = 607

 Score =  297 bits (760), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 100/476 (21%), Positives = 187/476 (39%), Gaps = 47/476 (9%)

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
           L  L    K     A    +L   +        R    +++      +        ++  
Sbjct: 67  LVRLYAIQKEPKFKAYFQRILEIRNG------VRPRPNEYDYAYWDLVIADQLPPPSEEG 120

Query: 426 ENMPQNGIEPED--VDTRINKRKMEIEV-MQLCSI-LEATSDGIAIINREGIILSTNRAV 481
           E +       +   +++      +  E   QL  I  E+ S    +I+RE     +N   
Sbjct: 121 EKISILDAMKQAGFLESDFLLLSLSKEKSDQLTKIEFESMS----MIDRELKTGKSNPKA 176

Query: 482 SKLFGYPVEDI-----LRKPFTVFLEQNTPSVMNHYLTEILS--------------LDLR 522
             +  +  + +     + KP      Q         L                     + 
Sbjct: 177 VAIL-FDDQYLKFKAEIMKPINDLYHQLDDRTTQAILDAKEKVFFLRTVLILSGIVFGIS 235

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHD----ISEWKQEKNKLSHAKK 576
                 +L S     +  +  +I  L           ++D    ++     + +L    +
Sbjct: 236 LYFTHRSLVSIMGGSVDEVFRLISLLGEGKFTGDIQILNDNKTILNSLNTTQKRLQELYE 295

Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
             E  S  KS+FLA +SHEIRTPL  +IG ++++         +     Y   I  +G  
Sbjct: 296 KTEMASRAKSEFLASMSHEIRTPLNGVIGITQILFETDL----DAEQKSYLKTIADAGKA 351

Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696
           +L+I+ND+LD SKI++GK+ +   P  L   V E   L  + AN K++  +     ++P 
Sbjct: 352 LLNILNDILDFSKIDAGKLTIQKTPFHLANLVREIFDLFAIEANTKQLEFKFEINPDVPE 411

Query: 697 ILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755
           ++  D   ++QI  N++ NAI FT +G  +I+S     +  ++ +++D+G+G++  +L  
Sbjct: 412 VIVSDPSRIRQILFNLIGNAIKFTETGF-VILSIKKEEH-SILFQIKDSGIGISYEKLTS 469

Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
             + F Q+  S   +  GTGLGL +++ +V    GK  + S    G+     FPL 
Sbjct: 470 LFQKFSQVDTSTSRKYGGTGLGLAISERLVGLLEGKIGVESVKGVGSTFWCSFPLS 525


>gi|293395210|ref|ZP_06639496.1| sensor histidine kinase RcsC [Serratia odorifera DSM 4582]
 gi|291422387|gb|EFE95630.1| sensor histidine kinase RcsC [Serratia odorifera DSM 4582]
          Length = 930

 Score =  297 bits (760), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 98/373 (26%), Positives = 162/373 (43%), Gaps = 29/373 (7%)

Query: 446 KMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           ++E        I+ +   GI I+   +G  + +N                  +   L Q 
Sbjct: 330 RLEEHEQFNRKIVASAPVGICILRISDGTNILSNELA-------------HNYINLLTQE 376

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564
                   +T I+       ++ +    T     L +  +  +          + D+S  
Sbjct: 377 D----RDRITRIICEQQANFVDVM----TSNNNNLQISFVHSRYRNEDVAICVLVDVSAR 428

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
            + +  L      AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R  
Sbjct: 429 VKMEESLQEMAAAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKALPEGVDR-- 485

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
              N ++ S  L+L I++D+LD SKIES ++ +     S  E ++           +KR+
Sbjct: 486 -LVNAMNNSSGLLLKIISDILDFSKIESEQLKIEPREFSCLEVITHIAGNYLPLVVKKRL 544

Query: 685 LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
            +      N+P  I  D   ++Q+  N+L+NAI FT +G  II+  T      +   VRD
Sbjct: 545 GLYCFIEQNVPERISGDPVRLQQVLSNLLNNAIKFTDTG-CIILQVTAR-GSYLEFSVRD 602

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TGVG+   E+ +   PF Q+    Q   +GTGLGL + + +++   G   + S P  G++
Sbjct: 603 TGVGIPEKEISRLFDPFFQVGTGVQRHFQGTGLGLAICEKLINMMDGDIAVESEPGLGSM 662

Query: 804 IEIIFPLYDTSHP 816
             I  PL+D  +P
Sbjct: 663 FSIRIPLFDAQYP 675


>gi|227356090|ref|ZP_03840480.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Proteus mirabilis ATCC 29906]
 gi|227163735|gb|EEI48647.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Proteus mirabilis ATCC 29906]
          Length = 919

 Score =  297 bits (760), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 93/370 (25%), Positives = 162/370 (43%), Gaps = 29/370 (7%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
             ++E        I+ +   GI+I+  R+G+I+ +N                  +   L 
Sbjct: 326 ASRLEEHEQFNHKIVASAPVGISILRIRDGMIILSNELA-------------HNYFRLLS 372

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
            +    +   + E  S         I    T     L +  +  +          + DIS
Sbjct: 373 HSDKQNILSIIAEKSSN--------IVDVVTNNHNHLQISFVNSRYQNEDVAICVLVDIS 424

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
              + +  L +    AE+ +  KS FLA VSHE+RTPL  IIG  E+++        N  
Sbjct: 425 ARVKMERSLQNMATAAEQANQAKSMFLATVSHELRTPLYGIIGNLELLQ----SLTQNEE 480

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                  +D S +L+L I++D+LD SKIES ++ +  +P +  + VS  IS       +K
Sbjct: 481 TARLLKTMDNSSSLLLKIISDILDFSKIESKQLKIDVKPFNCRQVVSFVISNYLPLIAKK 540

Query: 683 RILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
            + I      ++P+I+  D   V+Q+  N+L+N+I FT +G  I +   +     +   +
Sbjct: 541 DLAIYCFIEPDVPKIVNNDPVRVQQVISNLLNNSIKFTTTG-CITLHL-YRDEYYLYFDI 598

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            DTG G+    L +  +PF Q+  + +   EGTGLGL + + +++   G   + S    G
Sbjct: 599 HDTGRGINEKMLHQLFEPFFQVSQNTESASEGTGLGLAICEKLINLMDGDISVVSQENVG 658

Query: 802 TLIEIIFPLY 811
           +   +  PLY
Sbjct: 659 SRFTVRIPLY 668


>gi|197285590|ref|YP_002151462.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Proteus mirabilis HI4320]
 gi|194683077|emb|CAR43602.1| two component system, [includes both sensor kinase and response
           regulator domains] (capsular synthesis regulator
           component C) [Proteus mirabilis HI4320]
          Length = 942

 Score =  297 bits (760), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 93/370 (25%), Positives = 162/370 (43%), Gaps = 29/370 (7%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
             ++E        I+ +   GI+I+  R+G+I+ +N                  +   L 
Sbjct: 349 ASRLEEHEQFNHKIVASAPVGISILRIRDGMIILSNELA-------------HNYFRLLS 395

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
            +    +   + E  S         I    T     L +  +  +          + DIS
Sbjct: 396 HSDKQNILSIIAEKSSN--------IVDVVTNNHNHLQISFVNSRYQNEDVAICVLVDIS 447

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
              + +  L +    AE+ +  KS FLA VSHE+RTPL  IIG  E+++        N  
Sbjct: 448 ARVKMERSLQNMATAAEQANQAKSMFLATVSHELRTPLYGIIGNLELLQ----SLTQNEE 503

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                  +D S +L+L I++D+LD SKIES ++ +  +P +  + VS  IS       +K
Sbjct: 504 TARLLKTMDNSSSLLLKIISDILDFSKIESKQLKIDVKPFNCRQVVSFVISNYLPLIAKK 563

Query: 683 RILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
            + I      ++P+I+  D   V+Q+  N+L+N+I FT +G  I +   +     +   +
Sbjct: 564 DLAIYCFIEPDVPKIVNNDPVRVQQVISNLLNNSIKFTTTG-CITLHL-YRDEYYLYFDI 621

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            DTG G+    L +  +PF Q+  + +   EGTGLGL + + +++   G   + S    G
Sbjct: 622 HDTGRGINEKMLHQLFEPFFQVSQNTESASEGTGLGLAICEKLINLMDGDISVVSQENVG 681

Query: 802 TLIEIIFPLY 811
           +   +  PLY
Sbjct: 682 SRFTVRIPLY 691


>gi|251780024|ref|ZP_04822944.1| sensory transduction histidine kinase [Clostridium botulinum E1
           str. 'BoNT E Beluga']
 gi|243084339|gb|EES50229.1| sensory transduction histidine kinase [Clostridium botulinum E1
           str. 'BoNT E Beluga']
          Length = 664

 Score =  297 bits (760), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 84/369 (22%), Positives = 166/369 (44%), Gaps = 5/369 (1%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           K      +L   LE  +D  AI   +G  +      +K+ G+  E+++    T  + ++ 
Sbjct: 264 KRAESEKELELFLETATDLCAIAKDDGYFVKVTDNWTKVLGWSKEELINMKCTDLIHKDD 323

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
              +   +      +  + +  I     K  +   +      +     + +T  DI+ + 
Sbjct: 324 LPRIYKLIKLAQGYNKWKYVGFIDKCLCKNGEYRIIEWNWSYINGGKTFIMTGKDITNYN 383

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK---NQRFGPLGNPR 622
           +   + +   + A    S K+ F A +SHE +TPL  I+  +++++    +    L    
Sbjct: 384 KLALE-NKRLENAIALESLKTQFFANLSHEFKTPLNIILTTAQLMESYIKKFDDMLEKQS 442

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             +Y   + ++   +L +VN+L+DI+KI+ G   ++    ++   + E +  V  Y   K
Sbjct: 443 MGKYVRGLKQNSYRLLKLVNNLIDITKIDGGHYKVNMVNKNIVNVIEEIVLSVAEYTKNK 502

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-SNEEVILRV 741
              I          +  D   +++I LN++SNA+ +T   G I ++ +    + EVI+ V
Sbjct: 503 ERNIIFDTDEEEIILACDPEKIERIILNLVSNALKYTEKDGIIKVNISTNLHDNEVIISV 562

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
           +D G+G+     EK  + F Q+ NS     EG+G+GL L K++V+ + GK +I S   +G
Sbjct: 563 KDNGIGIPKEYKEKIFERFKQVENSLHKNYEGSGIGLSLVKSIVEMHEGKIWINSESDEG 622

Query: 802 TLIEIIFPL 810
           T I    P+
Sbjct: 623 TEIIFTLPI 631


>gi|229162473|ref|ZP_04290434.1| hypothetical protein bcere0009_32450 [Bacillus cereus R309803]
 gi|228620952|gb|EEK77817.1| hypothetical protein bcere0009_32450 [Bacillus cereus R309803]
          Length = 516

 Score =  297 bits (760), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 96/529 (18%), Positives = 196/529 (37%), Gaps = 39/529 (7%)

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTK 353
           +S +     +                +     +  P     +   G + + NPS   +  
Sbjct: 13  SSTQKKRPPNISGRLRNHIQDRSLVEMYASLFEHNPDSIISLNLEGVILHINPSAERILG 72

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
           Y S +++E     S L       + +    V  +  + T       + +I       L +
Sbjct: 73  YSS-EELERKNITSIL-------EAHISDQVPQFIKNTTADNQKEYIISIYHKDGYLLDV 124

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
                              ++P +   RI ++ ++    +L +++ +    +   + EG 
Sbjct: 125 VTKLVPTFVHNRLTGVYAIMKPLEKSERI-EKVLKDSEKRLRTLMNSMPAFVIFKDHEGR 183

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN----HYLTEILSLDLRQTLEKIT 529
            L  N      F +       K  +  ++ N            + E+     RQ L    
Sbjct: 184 WLEANDYALSCFNFHHVPYHGKRDSELIQYNEAYREAFLHCEEVDELAWQ-QRQILHGEE 242

Query: 530 LGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
               +++  L L I    L           +   D++E K+ +  L  ++K+A       
Sbjct: 243 FIIHRDDFDLILSISKVPLYHPDGSRKGLIVMGRDVTELKETEKLLRKSEKLAVV----- 297

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
               A ++HEIR PLT++ GF  ++      P  N     Y + +    + +  I +  +
Sbjct: 298 GQLTAGIAHEIRNPLTSLKGFLTLLL-----PEINEENKWYVDVMLSEISQMESITSQFM 352

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
            +SK +     L  +  ++   + E ++ +   A    + I      +   I  D   +K
Sbjct: 353 AMSKPQ----VLSIQTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFKHKHDIQCDGNQLK 408

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           Q+ +N+L NAI   P+GG I I      +  +++R+ D G G+    + +  +PF     
Sbjct: 409 QVFINVLKNAIEAMPNGGNIFIQIKPLDDNFIVIRIIDEGCGIPEDRISRLGEPFY---- 464

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
              ++ +GTGLGL +   +++ + GK +I S   KGT+++I  PL  + 
Sbjct: 465 --SLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTIVDIQLPLSSSH 511



 Score = 45.8 bits (107), Expect = 0.033,   Method: Composition-based stats.
 Identities = 21/257 (8%), Positives = 64/257 (24%), Gaps = 16/257 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ++  G +  I+    + +G  + ++    +  + +    D            N      +
Sbjct: 54  LNLEGVILHINPSAERILGYSSEELERKNITSILEAHISDQVPQFIKNTTADNQKEYIIS 113

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           ++  +G    + +    +P +  NR  +G   + I+           + K  +K+   L 
Sbjct: 114 IYHKDG--YLLDVVTKLVPTFVHNR-LTGV--YAIMKPLEKSERIEKVLKDSEKRLRTLM 168

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS--SLTEYYAHKDDVLKTEKY------- 259
                    +  +                + V      +    + +    E +       
Sbjct: 169 NSMPAFVIFKDHEGRWLEANDYALSCFNFHHVPYHGKRDSELIQYNEAYREAFLHCEEVD 228

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
            L   +   L  +E     +            L +        +      +     ++  
Sbjct: 229 ELAWQQRQILHGEEFIIHRDDFDLILSISKVPLYHPDGSRKGLIVMGRDVTELKETEKLL 288

Query: 320 NLTP--ETVDKCPIPFF 334
             +     V +      
Sbjct: 289 RKSEKLAVVGQLTAGIA 305


>gi|254420388|ref|ZP_05034112.1| Bacterial signalling protein N terminal repeat [Brevundimonas sp.
           BAL3]
 gi|196186565|gb|EDX81541.1| Bacterial signalling protein N terminal repeat [Brevundimonas sp.
           BAL3]
          Length = 746

 Score =  297 bits (760), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 88/375 (23%), Positives = 155/375 (41%), Gaps = 22/375 (5%)

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKL---------FGYPVEDILRKPFTVFLEQNT 505
              +EA SDG+   + +  +L  N   +++          G    ++L+           
Sbjct: 233 REAVEAMSDGLGFYDADDRLLLWNARYAEVNPELAPFLKVGITFREVLQIGINEGRYDEA 292

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
               + ++TE +   +R+  E         ++ L ++    +           +DI+  K
Sbjct: 293 IGREDEWITERI--RVRRQGESTIEQRVAGDRWLQIQD---RRTAEGGTVTVCNDITALK 347

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           ++   L  A+  AE  +  KS FLA +SHEIRTPL  +IG S+ +              E
Sbjct: 348 RDAQALREARDAAEAANVAKSQFLANMSHEIRTPLNGVIGLSQALSKTDLTA----EQHE 403

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
             + +  SG  +  +++D+LD++++ESGK+ L  +   L+ AV EA  L    A EK + 
Sbjct: 404 MLDLMQASGRTLQTLLSDILDLARVESGKLELTNDAFELERAVREAAQLYAENAREKHLG 463

Query: 686 IRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNE--EVILRV 741
                  +    I  D+  +KQI  N++SN++ FT  G   + +           +   V
Sbjct: 464 FHIDIDVDAGLWIRGDVVRLKQILTNLISNSVKFTSQGFVGLTVQRGPEKEGAPTLRFMV 523

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            DTG+G      E+    F Q       +  G+GLGL + + + +   G     S P  G
Sbjct: 524 EDTGIGFDAATRERLFSRFEQADGGITRQFGGSGLGLSICRQLAEMMGGDLDCESEPGGG 583

Query: 802 TLIEIIFPLYDTSHP 816
           +   +  PL     P
Sbjct: 584 SAFILTLPLITCEAP 598


>gi|254411336|ref|ZP_05025113.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
 gi|196181837|gb|EDX76824.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
          Length = 789

 Score =  297 bits (760), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 76/257 (29%), Positives = 131/257 (50%), Gaps = 10/257 (3%)

Query: 563 EWKQEK--NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           E +  +   +L  A +  +  +  KS+FLA +SHE+RTPLT +IG S  +     G  G+
Sbjct: 393 EQRVIERTQELRDALQATQAANHAKSEFLAAMSHELRTPLTCVIGLSATLLRWSLGEGGS 452

Query: 621 -----PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
                 +   Y   I  +G  +L ++ND+LD S++E+GK  L+    SL     + +  +
Sbjct: 453 KTVSIEKQRRYLQTIQENGEHLLALINDILDFSQLEAGKAVLNINEFSLRYLAQQTLRSL 512

Query: 676 QLYANEKRILIRTS--FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
           +  A+  ++ +           R  AD R ++QI  N+L NAI FTP+GGQ+ +      
Sbjct: 513 KEKASSGQVELILDWQVPTPKDRFQADPRRLRQILFNLLGNAIKFTPAGGQVTLR-GWRE 571

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
               + ++ DTG+G+   ++    + F Q+  + Q   EGTGLGL L + +V+ + G   
Sbjct: 572 QNRAVFQIEDTGIGIPQEQIPLMFQKFQQLEKTYQRTYEGTGLGLALTQQLVELHGGTID 631

Query: 794 IFSTPAKGTLIEIIFPL 810
           + ST  KG++  +  P+
Sbjct: 632 VESTVGKGSIFTVRVPI 648


>gi|156935053|ref|YP_001438969.1| phosphate regulon sensor protein [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156533307|gb|ABU78133.1| hypothetical protein ESA_02904 [Cronobacter sakazakii ATCC BAA-894]
          Length = 437

 Score =  297 bits (760), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 76/427 (17%), Positives = 152/427 (35%), Gaps = 37/427 (8%)

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             +L       I     L  + W     L +                  G+    +  + 
Sbjct: 33  WFLLAAVTGLLIWHFWNLLRLSW----WLWVDRSMTPPPGSGSWEPLLYGLHQMQLRNKK 88

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            +R++   + +  S  E+  D + +   EG+I   N    +L G    D   +     L 
Sbjct: 89  RRRELGNLIKRFRSGAESLPDAVVLTTEEGVIFWCNGLAQQLLGLRWPDDNGQNILNLLR 148

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
               +               +   +         + L  R++           +   D++
Sbjct: 149 YPEFTSYL----------RGKEFNRPLHLVLNNGRHLEFRVMPY---SEDQLLMVARDVT 195

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  Q +                + +F A VSHE+RTPLT + G+ E++  Q        +
Sbjct: 196 QMHQLEG--------------ARRNFFANVSHELRTPLTVLQGYLEMMHEQTLEGPLREK 241

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                + +      +  +V  LL +SKIE+       E + +   +       Q  + +K
Sbjct: 242 A---LHTMREQTFRMEGLVKQLLTLSKIEAAPAMQLNETIDVPMMLRVVEREAQTLSQQK 298

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           +          + ++L +   ++    N++ NA++ TP+G  I +   H +N      V 
Sbjct: 299 Q-TFTFEVDPQL-KVLGNDEQLRSAISNLVYNAVNHTPAGTHITVRWEHVANG-ARFSVA 355

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG G+    + +  + F ++  ++  +  G+GLGL + K  +  +  +  I STP KGT
Sbjct: 356 DTGPGIAAEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHALTHHDARLEIESTPGKGT 415

Query: 803 LIEIIFP 809
               + P
Sbjct: 416 TFSFLLP 422


>gi|309790555|ref|ZP_07685111.1| PAS sensor protein [Oscillochloris trichoides DG6]
 gi|308227406|gb|EFO81078.1| PAS sensor protein [Oscillochloris trichoides DG6]
          Length = 748

 Score =  297 bits (760), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 112/742 (15%), Positives = 260/742 (35%), Gaps = 86/742 (11%)

Query: 127 IDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFS-GFRGFGIVH 185
           +DP+     LL R         L  + G  L++    +     S          G  I+ 
Sbjct: 33  LDPDELFVTLLARV-----VEALPAVHGGVLWIADPKSGRLRASATAGLPLDAPGRQILL 87

Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVE----KEKYDIFSQQSPPPHLRM----- 236
              + +   A G    +    + E + G+  +          +F Q S     R+     
Sbjct: 88  SAALRSGEGAAGMVFLRDEPRIVETRLGYRDILGNLPPASATLFQQISEQLPRRLVCACV 147

Query: 237 KNKVSSLTEYYAHKDDVLKTEKYPL-LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN 295
             +V S          +    + P     E   LP  + F  +  +     Q +   Q +
Sbjct: 148 PMRVGSEVIGVLELLTLGNPVEMPDGRAIEVEDLPMLQIFANLAASAIKNAQLYHQAQRS 207

Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLL---- 351
            +    + +     S +A           +V    +     + G +   +P+   L    
Sbjct: 208 ERRLKAFDAVVTAISTAA----DLCDLVHSVLHVVMGLIDETSGAILLLDPAHDRLDLGA 263

Query: 352 ---TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
                   V+ ++      +  +         ++P++  R +   + A  +         
Sbjct: 264 QHNLPAACVEVLKRVPVAISPCEEVVHFGQPMLRPLLEERGEAAFLDAGFQGCAYFPLLA 323

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI------EVMQLCSILEATS 462
                  +        P +  +  I P           + +      E  +L +++ + +
Sbjct: 324 GGTVAGVLALYGDADLPIHADREMILPICNQVGFAVANVRLYADSSSERRKLHTVVTSIA 383

Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRK-----PFTVFLEQNTPSVMNHYL--TE 515
           +G+ + +  G +   N A   L         ++      F    + +   +    L    
Sbjct: 384 EGVLLCDGRGRLTLANEAALTLLRLDSLPFEQRLADMPDFYRMRDLDGHRLTLDQLPFAR 443

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSH 573
            L+ ++ Q    +  GS+ +E ++S      +          +   D++  ++ +     
Sbjct: 444 ALAGEIFQDYRLMLSGSSGDETVMSFSGAPARADDGQIEGAVVVFRDVTTHQKLE----- 498

Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN-QRFGPLGNPRYIEYANYIDR 632
                      K +FLA  +HE+R+PL A+  +++++   ++     + R +     + +
Sbjct: 499 ---------QAKDEFLAVAAHELRSPLAAVRNYADLLLRREQQRSQADSRDVRGLTILTQ 549

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
             + +L +V++LLD+S+I++G+++L  +PV+L   V++ I   +  A  + +++   + +
Sbjct: 550 QVSHMLRMVDNLLDVSRIDAGQLDLQLQPVNLVALVNQVIDQQRPAAGTRELIL--EYPD 607

Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH--------------------- 731
               I  D   + Q+  N+++NAI ++P GG++ +                         
Sbjct: 608 TELLIACDSLRIHQVMTNLINNAIKYSPEGGRVSVRLRVVLGEERHIFADQPSAEVEALL 667

Query: 732 ---TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                +  V++ + D G G+T  +  +  + F +    +  R EG GLGL L++  V  +
Sbjct: 668 QRSAEHGLVVITITDEGGGITPEQQARLFERFYRA---RSQRAEGLGLGLYLSRQFVQMH 724

Query: 789 MGKFYIFSTPAKGTLIEIIFPL 810
            G  ++ S    G+      P+
Sbjct: 725 GGVIWVESVEGAGSTFAFALPI 746


>gi|220908294|ref|YP_002483605.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219864905|gb|ACL45244.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 733

 Score =  297 bits (760), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 82/243 (33%), Positives = 131/243 (53%), Gaps = 4/243 (1%)

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
             L  A          KSDFLA ++HE+RTPLT +IG S  +     GPL N +   Y  
Sbjct: 344 QALYDALLSTHSAHRAKSDFLATINHELRTPLTCVIGMSATLLRWSLGPL-NDKQRSYLK 402

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I  SG  +L+++ND+LD+S++E+GK  L     SL++   +A+ + +  A E  + ++ 
Sbjct: 403 TIHDSGEHLLELINDILDLSQVEAGKAVLSLSEFSLNQLCRQALRVFREKAQEAEVELKL 462

Query: 689 S--FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
                +   R  AD R V+QI  N+LSNAI FTP+GG++ +  +   N + + +V DTG+
Sbjct: 463 ESLIPSEFERFCADQRRVRQILFNLLSNAIKFTPAGGRVTLR-SWVENGKALFQVEDTGI 521

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G++  +     + F Q+  S     EG GLGL L K +V+ + G+  + ST   G++  +
Sbjct: 522 GISLSQQPLLFQKFQQLDTSYTRSYEGVGLGLALTKQLVELHRGRIEVESTEGIGSIFTV 581

Query: 807 IFP 809
             P
Sbjct: 582 ELP 584


>gi|170021228|ref|YP_001726182.1| phosphate regulon sensor protein [Escherichia coli ATCC 8739]
 gi|169756156|gb|ACA78855.1| PAS/PAC sensor signal transduction histidine kinase [Escherichia
           coli ATCC 8739]
          Length = 431

 Score =  297 bits (760), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 73/427 (17%), Positives = 151/427 (35%), Gaps = 37/427 (8%)

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             +L       I     L  + W     L +         +        G+    +  + 
Sbjct: 33  WFLLASITGLLIWHFWNLLRLSW----WLWVDRSMTPPPGRGSWEPLLYGLHQMQLRNKK 88

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            +R++   + +  S  E+  D + +   EG I   N    ++ G    +   +     L 
Sbjct: 89  RRRELGNLIKRFRSGAESLPDAVVLTTEEGGIFWCNGLAQQILGLRWPEDNGQNILNLLR 148

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
               +               +   +         + L +R++           +   D++
Sbjct: 149 YPEFTQYL----------KTRDFSRPLNLVLNTGRHLEIRVMPYTHKQ---LLMVARDVT 195

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  Q +                + +F A VSHE+RTPLT + G+ E++  Q        +
Sbjct: 196 QMHQLEG--------------ARRNFFANVSHELRTPLTVLQGYLEMMDEQPLEGAVREK 241

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                + +      +  +V  LL +SKIE+   +L  E V +   +       Q  + +K
Sbjct: 242 A---LHTMREQTQRMEGLVKQLLTLSKIEAAPTHLLNEKVDVPMMLRVVEREAQTLSQKK 298

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           +        N + ++  +   ++    N++ NA++ TP G  I +      +      V 
Sbjct: 299 Q-TFTFEIDNGL-KVSGNEDQLRSAISNLVYNAVNHTPEGTHITVRWQRVPHG-AEFSVE 355

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G G+    + +  + F ++  ++  +  G+GLGL + K  V+ +  +  I ST  KGT
Sbjct: 356 DNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHAVNHHESRLNIESTVGKGT 415

Query: 803 LIEIIFP 809
               + P
Sbjct: 416 RFSFVIP 422


>gi|127514716|ref|YP_001095913.1| multi-sensor hybrid histidine kinase [Shewanella loihica PV-4]
 gi|126640011|gb|ABO25654.1| Hpt sensor hybrid histidine kinase [Shewanella loihica PV-4]
          Length = 1042

 Score =  297 bits (760), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 95/433 (21%), Positives = 176/433 (40%), Gaps = 26/433 (6%)

Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPE-NMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
              L  I+  R    A       + +   E  +  N            + +++     + 
Sbjct: 204 RVLLDPIRRIRRQIEAFGGQKTIRLDSDDEFGVLVNSYNEAVSARNQKQLELQKSRRYID 263

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           +I       +A ++ +      N+   +  G   ED+L +        +   ++  Y   
Sbjct: 264 NITNVIPIQLAYVDAQSRYRFINQHYLQWLGKTEEDVLDQTVEAVQPADVYQLIKPYQQG 323

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKN---- 569
           +L+   +Q  E  T+ + +  +   +  +           Y + + D++  K  +     
Sbjct: 324 VLA-GNKQVFEAETIDADQAPRFFHITYVPDVGDDGQVEGYFICVEDLTRMKLNERKIET 382

Query: 570 ----------KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
                      LS A++ AE  +  K DFLA +SHEIRTP+  +IG   ++   +  P+ 
Sbjct: 383 YAQEMEFSNWALSEAREKAEVAAKTKEDFLACMSHEIRTPMNGVIGILGLLGETQLSPM- 441

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
                 Y +    S + +L ++ND+LD SKIESGK  +      L E +   +  V L  
Sbjct: 442 ---QKRYVDVASASADSLLSLLNDILDFSKIESGKFEIEAIEFDLVELLDLFVQSVSLKL 498

Query: 680 NEKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEV 737
            E+ + +           ++ D   ++QI +N++ NAI FT  G   + +S   + + EV
Sbjct: 499 EERHLPLFVDITQLQYRYVVGDPSRLRQILVNLVGNAIKFTEEGWIALRLSNRLSESGEV 558

Query: 738 ILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
           +L   V DTG+G+   +L     PF Q+ +S      GTGLGL +AK + +   G+  + 
Sbjct: 559 LLSCEVEDTGIGIAKEKLAMLFNPFIQVDSSTTRMFGGTGLGLSIAKRLCELMQGEIKVR 618

Query: 796 STPAKGTLIEIIF 808
           S    G++     
Sbjct: 619 SQQEVGSIFSFTL 631


>gi|260769448|ref|ZP_05878381.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Vibrio furnissii CIP 102972]
 gi|260614786|gb|EEX39972.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Vibrio furnissii CIP 102972]
          Length = 1190

 Score =  297 bits (760), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 89/444 (20%), Positives = 175/444 (39%), Gaps = 39/444 (8%)

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
              +A   +  W    S       F  +           +  +  + +  +  +  ++  
Sbjct: 514 WWNNAYFSSQSWRDYQSQIYLIAAFLLSLGIISTFWNRRLAQQVKERQAAENSLSAQLQF 573

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS-VMNHY 512
           + S++      I + + +  +++ N    ++FG      + K      +    +      
Sbjct: 574 MQSLINGIPHPIYVRDNQLKLVTCNSQYYQVFGLDRASAIGKTPQEVKKNLQEAVKFESD 633

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH----DISEWKQEK 568
             +++       +++    +      LS+   I+    ++ + L +     D+S+ +   
Sbjct: 634 YQQVIRTGEPILVDRTLHVA---GTELSIYHWIEPYKDTAGHCLGVICGWIDVSDRRDLI 690

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV-IKNQRFGPLGNPRYIEYA 627
            +L        + S  K+ FLA +SHEI TP+ AIIG  E+ IK    G    P      
Sbjct: 691 EQL-------TQASKAKTTFLATMSHEIHTPMNAIIGLLEIAIKKSHQGHFDVP----AL 739

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
                S + +  ++ D+LDI +IESG +++  + V+L + V     +    A +K I + 
Sbjct: 740 EVAYDSAHNLQVLIGDILDIVRIESGHISIAPQRVNLRDLVESITRVFDGLARQKYIQLD 799

Query: 688 TSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIIS---------TTHTSNEE 736
                 I + +  D   +KQI  N+LSNAI FT  GG  + ++         T       
Sbjct: 800 VHIDPTITQDVYVDPTRLKQILSNLLSNAIKFTDQGGVTVTVTNHGPSETTFTEPEQQGS 859

Query: 737 VI----LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
           +       V+DTG G++    ++   PF Q+ +    R  G GLGL + +++ +   G  
Sbjct: 860 IAERYSFVVKDTGTGISEEAQQRLFAPFVQVHSDVDRR--GAGLGLSIVQSLCNMMGGTI 917

Query: 793 YIFSTPAKGTLIEII--FPLYDTS 814
            + S    GT IE+    P+ +  
Sbjct: 918 ALCSEVGVGTQIEVSLLLPVLEPE 941


>gi|188587492|ref|YP_001919037.1| multi-sensor signal transduction histidine kinase [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179352179|gb|ACB86449.1| multi-sensor signal transduction histidine kinase [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 612

 Score =  297 bits (760), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 71/380 (18%), Positives = 165/380 (43%), Gaps = 37/380 (9%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           +++  E  ++ +IL   SDG+  +N    I+  N A  ++     E +  +     L + 
Sbjct: 243 KEISSEKGKIEAILTQMSDGVIAVNSNKEIIHINPAAERMLNVEREKLRGQCAKELLSKF 302

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDIS 562
                   +     L     +++    +T E+ ++  +++  K          + ++DI+
Sbjct: 303 FTDEEFDQI-----LKGETNVKEEKNLTTNEDMVVRAQLVPFKSEEKQYEGVIIALNDIT 357

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E ++                  + +F+A VSHE+RTPLT++  + E + +       +  
Sbjct: 358 EQEKL--------------IQMRQEFVANVSHELRTPLTSVKSYVETLLDGAH--KDDEI 401

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
              +   + +  + ++ +V DLL +S+++  +  +    ++  + +  +IS ++    ++
Sbjct: 402 APRFLKVVQQETDRMVTMVKDLLVLSQLDRKEPIIECRDINFMDVLDRSISAIESLTKDQ 461

Query: 683 RILIRTSFA-------------NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
           +I +   +                  RI  D   + Q+  NIL NAI ++PSG  I I+ 
Sbjct: 462 KIELHLDYKSLEGEYIDVFNEKPEFIRISGDSDKLTQVFTNILENAIKYSPSGEWIQITV 521

Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
                E + + V+D G+G+   +L +  + F ++  ++     G+GLGL +++ ++  + 
Sbjct: 522 E-DYYENIKISVKDNGMGIPAEDLPRIFERFYRVEKARSRARGGSGLGLAISREIIRNHG 580

Query: 790 GKFYIFSTPAKGTLIEIIFP 809
           G   + S   +GT + +  P
Sbjct: 581 GDINVSSQEGRGTEVIVYLP 600


>gi|183220358|ref|YP_001838354.1| putative two-component response regulator [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
 gi|189910473|ref|YP_001962028.1| two component response regulator sensor histidine kinase/response
           regulator subunits [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167775149|gb|ABZ93450.1| Sensor histidine kinase and response regulator of a two component
           complex [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|167778780|gb|ABZ97078.1| Putative two-component response regulator; putative membrane
           protein; putative signal peptide [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 1065

 Score =  297 bits (760), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 72/276 (26%), Positives = 135/276 (48%), Gaps = 6/276 (2%)

Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQ---EKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
           +   ++ +P      + +  ++  ++     +++    K        K +FLA  SHE++
Sbjct: 382 IFYSVEAIPIGIFVFILVQSLTLSRRFSRAFSEVETLSKRLLALDKLKDEFLANTSHELK 441

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TPL  IIG +E + +   G L N    +    I  SG  +  +V+D+LD SK+++  ++L
Sbjct: 442 TPLNGIIGIAESMFDGIGGKL-NQEQRQNLGMIVSSGKRLSSLVDDILDFSKMKNRDLDL 500

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
             + + L +     + + +     K + +R +   + P IL D   ++QI  NI+ NAI 
Sbjct: 501 DLKAIDLHQICDFVLVISRPLYVTKNLTVRNNVPIDFPPILGDEARLQQILFNIIGNAIK 560

Query: 718 FTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
           FT  G +I +S         ++ +RDTG+G+   +     + F Q+  S   +  GTGLG
Sbjct: 561 FTEKG-RIDVSAEIIEK-MAVISIRDTGIGIPKDKFGDIFRSFEQVDASTTRKFGGTGLG 618

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
           L ++K +V+ + G  ++ STPA+G++     PL   
Sbjct: 619 LAISKRLVELHGGNIWVESTPAEGSMFSFSLPLARE 654


>gi|160899840|ref|YP_001565422.1| multi-sensor hybrid histidine kinase [Delftia acidovorans SPH-1]
 gi|160365424|gb|ABX37037.1| multi-sensor hybrid histidine kinase [Delftia acidovorans SPH-1]
          Length = 653

 Score =  297 bits (760), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 84/500 (16%), Positives = 184/500 (36%), Gaps = 25/500 (5%)

Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDD--------IEIAGGLSTLLDAPKLSDNNAIKPV 384
             V  +    Y+    +    +++V+         +   G  + +LD      +      
Sbjct: 21  LVVDDNPATRYSTARVIRAAGFQTVEAETGEKAIALSETGVAAVVLDVHLPDISGFDVCR 80

Query: 385 MLY-RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
            +      + I           +      +            E           +  R+ 
Sbjct: 81  TIRGARHTSLIPVVHLSAEYVQSNHQVAGLNAGADAYMVHPVEPQLLIATLHALIRARLA 140

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
           +  +     +  +I +     + +++ +G+I   N     L    ++D+  KP   F+  
Sbjct: 141 EDGLRRSESRFRAIYDQAPAAMMLVSADGLISDANSQAQALLQRGIDDLAGKPLAGFVP- 199

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                +     + L+ D  ++          + +   +                  D++E
Sbjct: 200 ---QAVREKAAQQLAEDPEKSWRGEFPILPADGQERLISWKFSDPIEPGIRLAVAQDLTE 256

Query: 564 WKQEKNKLSHAKKIAEKE-------SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
             + + +     +  +         S  K DF+A +SHE+RTPL+ + G + ++K     
Sbjct: 257 SLEFERQRQQMLEQEQAARVAAERISRTKDDFVAVLSHELRTPLSLLNGGTHLLKR---A 313

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
            L      +  + I++       I+ D+LDIS++ +GK+NLH E V++     +++  ++
Sbjct: 314 NLSEAMLKKGIDAIEKGVKAQSRIIADILDISRLTTGKLNLHREEVNVCSLAVQSLEPLR 373

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
             A +K I ++    ++      D+   +QI  N++SNAI F+ +   + +    +    
Sbjct: 374 DNAADKNITLQFEAPSDDIMAWIDVTRFQQILWNLVSNAIKFSNARSVVKVGLEISDE-S 432

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           +++ V D GVG+    L    + F Q          G GLGL + K +V+ + G     S
Sbjct: 433 LVMSVADEGVGIAPEFLPHVFERFSQASAPATRGHSGLGLGLSIVKHLVELHGGTVRAHS 492

Query: 797 T-PAKGTLIEIIFPLYDTSH 815
               +G  + +  PL++ S 
Sbjct: 493 EGVGRGVTMRVEIPLHEASA 512


>gi|315918685|ref|ZP_07914925.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|313692560|gb|EFS29395.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
          Length = 417

 Score =  297 bits (760), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 93/419 (22%), Positives = 172/419 (41%), Gaps = 24/419 (5%)

Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
             +   R   + +T       +     +    I  +  +T     K++        I + 
Sbjct: 8   QYVDSRRNGIINLTTKVTALYDSQNRFINYLFINIDTTETTNAYTKIQEFENLFLLIGDY 67

Query: 461 TSDGIA---IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE--QNTPSVMNHYLTE 515
              G A   ++ R+G          +  G      + +   V+        +V+ +++ E
Sbjct: 68  AKVGFAHFNVLTRDG---YAQDTWYRNLGEKEGTPMPQVIGVYAHVVPEDQAVLKNFVGE 124

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLS--LRIIIKKLPFSSCYS---LTMHDISEWKQEKNK 570
           +       +L K      +  K     + ++++               +DI+  K+ + K
Sbjct: 125 V-KTGKATSLRKEVRVCRENGKYTWTSINVMVRDYRPQDGIIEMLCINYDITPLKETEQK 183

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           L  A+  AE+    KS FLA +SHEIRTPL AI+GFS ++              EY   +
Sbjct: 184 LIIARDKAEELDRLKSAFLANMSHEIRTPLNAIVGFSSLLAETD----SRSERQEYIKIV 239

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
             +  L+L +++D+LD+SKIE+G  N  +  V ++E  SE I  + +    K + +    
Sbjct: 240 QENNELLLQLISDILDLSKIEAGTFNFVYTNVDVNETCSEIIKSMGMKV-GKGVELILEE 298

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
                 I  D     Q+  N ++NA+ FT  G  I +     S++++   VRDTG+G+  
Sbjct: 299 PFPECYIYTDKNRFTQVISNFINNALKFTQQGS-ITLGYEQVSHQKIKFYVRDTGMGIPE 357

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            + +   + F ++        +GTGLGL + K++V    G+  + ST   G+      P
Sbjct: 358 EKQKSVFERFVKLNTF----VQGTGLGLSICKSIVSQMGGEIGVESTEGVGSCFWFTHP 412


>gi|258592849|emb|CBE69158.1| putative Histidine kinase [NC10 bacterium 'Dutch sediment']
          Length = 731

 Score =  297 bits (760), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 96/294 (32%), Positives = 150/294 (51%), Gaps = 25/294 (8%)

Query: 545 IKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
              L  +  ++  +    E ++       +L  A       S HK+ FL  +SHE+RTPL
Sbjct: 431 ASALRNAQLHAEVVRYSHELERLVEVRTRELQIANGHLADASRHKTAFLTNMSHELRTPL 490

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
            AI+GFS+++ +Q FGPL   +   YAN+I  SG  +L ++NDLLD+SK+E+GK+ L  E
Sbjct: 491 NAILGFSDLLCDQTFGPLT-AKQARYANHIQTSGRHLLALINDLLDLSKVEAGKLTLRLE 549

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720
           P  L EA++ A+  +Q  A+ KR+ I          + AD    KQI  N+LSNA+ FTP
Sbjct: 550 PFDLSEALTVAVYEIQPVADAKRLTIVPDIDTAPITLTADPVRFKQIIYNLLSNAVKFTP 609

Query: 721 SGGQIIISTT-------------------HTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761
            GG I +S +                   H S + V + V DTG+G+   +L +    F 
Sbjct: 610 EGGTIRVSASLGRRESGVEAPPHPIPTTLHHSGDFVEIAVTDTGIGIAAEDLSRLFTRFT 669

Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFPLYDTS 814
           Q+      + +G+GLGL L K +V+ + G   + S  P +G+   +  P+   +
Sbjct: 670 QLEIETTKQFQGSGLGLALTKQLVELHGGTITVTSAGPGQGSRCTVRLPMTPPA 723


>gi|260769147|ref|ZP_05878080.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio furnissii CIP
           102972]
 gi|260614485|gb|EEX39671.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio furnissii CIP
           102972]
          Length = 834

 Score =  297 bits (760), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 78/371 (21%), Positives = 155/371 (41%), Gaps = 21/371 (5%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           +++  +  Q   +         +   EG ++  N +    F     +         L   
Sbjct: 327 QRLSDQEKQFEDLFNFALSPTILWTAEGELIRMNPSAHSHF--LRNNADDHSLFSVL--- 381

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISE 563
               +   +      ++ + +         + +++   +    +            D++ 
Sbjct: 382 -KRQLIPQIKLAAQGEILKEVNTEV-----DGRVILWNLSPIVVENRIESIITQGQDVTS 435

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + + +   A+K AE+ +  ++DFLA++SHE+RTPL  I+G S+++K      +     
Sbjct: 436 IAEAEKQSRIARKEAEESARVRADFLAKMSHELRTPLNGILGVSQLLKRT----VTEKEQ 491

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            E  N +  SG  +L ++ND+LD SKIE GK  +      L + VS    + +    EK 
Sbjct: 492 AEQVNVLCSSGEHLLAVLNDILDFSKIEQGKFRIQKADFPLVDVVSAIERIYRPLCREKG 551

Query: 684 ILIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH---TSNEEVIL 739
           + +  +    +   +  D   + QI  N+L+N++ FT  G  I I        +  ++ +
Sbjct: 552 LTLTLNTNIGDDLVVRTDQVRLNQILFNLLNNSVKFTHEGA-INIQLHLLETEAGAKLEI 610

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V DTG+G+   +L    +PF Q  ++      G+GLGL +  ++++   G   + S+  
Sbjct: 611 TVLDTGIGIREQDLALIFEPFVQAESTNTREYGGSGLGLAIVHSLIEMLGGSIEVKSSFG 670

Query: 800 KGTLIEIIFPL 810
            GT   I  PL
Sbjct: 671 VGTRFTIELPL 681


>gi|116624890|ref|YP_827046.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116228052|gb|ABJ86761.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 499

 Score =  297 bits (760), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 90/489 (18%), Positives = 194/489 (39%), Gaps = 45/489 (9%)

Query: 334 FVYSHGNLFYANPSFLLLTKYKSVDDIEI--------AGGLSTLLDAPKLSDNNAIKPVM 385
           +V   G + +AN + L L  Y   + I          A  +  +L      D+ +     
Sbjct: 39  WVAEDGTILWANAAELELLGYTREEYIGRNIRDFHVDAAVIEDILQRLSNDDSLSAFEAR 98

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
           L R D +    S   + ++   +                   +    +  +  + +    
Sbjct: 99  LRRKDGSIRDVSISSNVLRTGGK------------------FVHTRCVTVDITEKKNA-S 139

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           +++    ++ +I+E++ D I   +  GII S NR   ++FGY  ++I+ K  +     + 
Sbjct: 140 ELQ---ERMAAIVESSDDAILSKDLNGIIQSWNRGAERIFGYKADEIVGKHISTLAAPDA 196

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDI 561
              + + L  +   +  +     T   TK+ ++L++ + +  +  SS   +       DI
Sbjct: 197 VDEIPNILDRLRRGE--RVDHYQTRRMTKDGRILTVSLTVSPIRDSSGVIVGASKVARDI 254

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           +E  Q +  +  A     + +S    F+   SH+++ PL  I  FS ++K +  G LG P
Sbjct: 255 TERHQHERAICEANAALTRANSDLQQFVYSASHDLQEPLRMIAAFSGMLKKKFEGKLG-P 313

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
              +Y          +  ++ DL   ++I  G      E V     + + +  + +   +
Sbjct: 314 EADQYIELTLEGALRMEQLLKDLRSFAQISIGGEEP-VEDVDAGATLDKTMDNLAVLIRD 372

Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF-TPSGGQIIISTTHTSNEEVILR 740
               I  +    +P +      ++Q+  N++ N+I + + +  +I ++      E V   
Sbjct: 373 SGARITRT---TLPHVRIHKFQLEQLFQNLIGNSIRYRSSAPPRIHVAAELGDKEWV-FS 428

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V D G+G+     E+    F ++ +       GTG+GL + + +VD   G+ ++ S P +
Sbjct: 429 VADNGIGIETQFKEQIFGMFKRLHS--TAEYPGTGMGLAICQRIVDRVGGRIWVESEPGQ 486

Query: 801 GTLIEIIFP 809
           G+      P
Sbjct: 487 GSKFFFTVP 495



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/244 (10%), Positives = 63/244 (25%), Gaps = 8/244 (3%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG-KTT 148
           D +G ++  +    +  G  A +++G  +  ++    +D   +I D L+R       +T 
Sbjct: 160 DLNGIIQSWNRGAERIFGYKADEIVGKHISTLAAPDAVDEIPNILDRLRRGERVDHYQTR 219

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +G  L V + ++  PI   +    G     +       +         +   +  +
Sbjct: 220 RMTKDGRILTVSLTVS--PIRDSSGVIVGASK--VARDITERHQHERAICEANAALTRAN 275

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK---TEKYPLLTSE 265
              +              +        +K K        A +   L      +   L  +
Sbjct: 276 SDLQQFVYSASHDLQEPLRMIAAFSGMLKKKFEGKLGPEADQYIELTLEGALRMEQLLKD 335

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
             S  +        +             +N          R   +   +    +    + 
Sbjct: 336 LRSFAQISIGGEEPVEDVDAGATLDKTMDNLAVLIRDSGARITRTTLPHVRIHKFQLEQL 395

Query: 326 VDKC 329
               
Sbjct: 396 FQNL 399



 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/379 (9%), Positives = 88/379 (23%), Gaps = 31/379 (8%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151
            G +   +    + +G    + IG  + D   +      + +  L    +    +  L  
Sbjct: 43  DGTILWANAAELELLGYTREEYIGRNIRDF-HVDAAVIEDILQRLSNDDSLSAFEARLRR 101

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
            +G+   V I    L       +F   R   +        +       L ++ + + E  
Sbjct: 102 KDGSIRDVSISSNVLRTG---GKFVHTR--CVTVDITEKKNA----SELQERMAAIVESS 152

Query: 212 KGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLK-TEKYPLLTSEES 267
                 +     I S           +    V       A  D V +       L   E 
Sbjct: 153 DDAILSKDLNGIIQSWNRGAERIFGYKADEIVGKHISTLAAPDAVDEIPNILDRLRRGER 212

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
               Q    T +    T       ++++S             +     +         + 
Sbjct: 213 VDHYQTRRMTKDGRILTVSLTVSPIRDSSGVIVGASKVARDITERHQHERAICEANAALT 272

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
           +                   F+    +   + + +    S +L               + 
Sbjct: 273 RANSDL------------QQFVYSASHDLQEPLRMIAAFSGMLKKKFEGKLGPEADQYIE 320

Query: 388 RSDRTCIAASARLHTIQWN-----RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
            +    +     L  ++                      ++  +N+     +     TR 
Sbjct: 321 LTLEGALRMEQLLKDLRSFAQISIGGEEPVEDVDAGATLDKTMDNLAVLIRDSGARITRT 380

Query: 443 NKRKMEIEVMQLCSILEAT 461
               + I   QL  + +  
Sbjct: 381 TLPHVRIHKFQLEQLFQNL 399


>gi|270262775|ref|ZP_06191046.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270043459|gb|EFA16552.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 956

 Score =  297 bits (760), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 97/373 (26%), Positives = 161/373 (43%), Gaps = 29/373 (7%)

Query: 446 KMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           ++E        I+ +   GI I+   +G  + +N                  +   L   
Sbjct: 353 RLEEHEQFNRKIVASAPVGILILRISDGTNILSNELA-------------HNYINLLTHE 399

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564
                   +T I+       ++      T     L +  +  +          + D+S  
Sbjct: 400 D----RDRITRIICEQQVNFVD----VLTSNNNNLQISFVHSRYRNEDVAICVLVDVSAR 451

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
            + +  L      AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R  
Sbjct: 452 VKMEESLQEMAAAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKALPQGVDR-- 508

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
              N ++ S  L+L I++D+LD SKIES ++ +     S  E ++           +KR+
Sbjct: 509 -LVNAMNNSSGLLLKIISDILDFSKIESEQLKIEPREFSCLEVITHIAGNYLPLVVKKRL 567

Query: 685 LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
            +      N+P  I  D   ++Q+  N+L+NAI FT +G  II+    T +  +   VRD
Sbjct: 568 GLYCFIEQNVPERISGDPVRLQQVLSNLLNNAIKFTDTG-CIILQV-CTRSSYLEFSVRD 625

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TGVG+   E+ +   PF Q+ +  Q   +GTGLGL + + +++   G   + S P  G+L
Sbjct: 626 TGVGIPEKEITRLFDPFFQVGSGVQRHFQGTGLGLAICEKLINMMDGDIAVESEPGLGSL 685

Query: 804 IEIIFPLYDTSHP 816
             I  PL++   P
Sbjct: 686 FTIRIPLFNAQFP 698


>gi|296123509|ref|YP_003631287.1| PAS sensor protein [Planctomyces limnophilus DSM 3776]
 gi|296015849|gb|ADG69088.1| PAS sensor protein [Planctomyces limnophilus DSM 3776]
          Length = 1015

 Score =  297 bits (760), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 98/640 (15%), Positives = 197/640 (30%), Gaps = 44/640 (6%)

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY 246
                  ++     +     +H +     + + +       +     +++ + V      
Sbjct: 209 AARIVAEQSARLTSENFRVTIHSVDDALVTTDAQGRITLMNEVAKSLIQVSDDVLGQPVD 268

Query: 247 YAHKDDVLK-------TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
              +                 L T ++ +  E       +  +         ++N+  + 
Sbjct: 269 RIFQIQQDSGTTANEHPVHQVLRTGQKLAATETNWLIRADGTRVAVDDRASPIRNSKGKL 328

Query: 300 FEYLSHRNHPS----LSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKY 354
              +      S     +      +       D   +   + +  G +  AN ++L    Y
Sbjct: 329 QGTVLVVRDISEKLKAAQAIRRRDERFRRVFDSSLVGMALCNKYGRIIDANETYLETIGY 388

Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
                         +        +         R+   C         I  N      + 
Sbjct: 389 SREGLYSADLSWGDITPTQFSGLD--TGAWEELRATGRCRPFEKEF--IAQNGMRVPVLI 444

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII 474
                  ++  E                   ++     +   +  A+   + I       
Sbjct: 445 AAVKLLDDEESEVAIYTVNL----------SQLRAAEQRYRMLTNASPQIVWIARPGEDN 494

Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
           L  N    +  G   ++     +   +       +    +        +T E       +
Sbjct: 495 LYCNDRWYEYTGLTPDETRGMGWLRAVPTEHQGQVAREWSTA--SRKPETCEFELPLRGR 552

Query: 535 EEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
           +       +       S    +    TM DI   +Q + +L       E     K  FLA
Sbjct: 553 DGLSRWHLLRGVPQINSDGVVVEMIGTMTDIDALRQAQQEL-------ELADRRKDFFLA 605

Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650
            +SHE+R PLT I    E  +     P       E  +   R    ++ +++DLLD+S+I
Sbjct: 606 TLSHELRNPLTPISNALEAWRAADLSPEELTEVREMLS---RQTKQMVRLIDDLLDVSRI 662

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710
             GK+ L    + L E +  +I + Q    +    + T   N    I AD   + QI  N
Sbjct: 663 SGGKIQLKPAILDLRECIQTSIEVAQPLIRQAGHQLTTDLPNEPVWIKADATRIVQIVAN 722

Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           +L+NA  +T   G+I +      + +V ++V D G G+  + LE+    F Q+ +S    
Sbjct: 723 LLNNAAKYTDPQGRIHLQVVPFEH-QVEIQVVDNGAGIPAHMLEQIFGMFEQVGSSLDRA 781

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFP 809
             G G+GL L +++ + + G    FS    KG+   I  P
Sbjct: 782 QGGLGIGLTLVRSLAELHGGSVVAFSEGLGKGSRFTITLP 821



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/376 (11%), Positives = 102/376 (27%), Gaps = 26/376 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH----IGDLLKRQNTWY 144
            DA G +  ++ E+ K++   +  ++G  +  +  I            +  +L+      
Sbjct: 239 TDAQGRITLMN-EVAKSLIQVSDDVLGQPVDRIFQIQQDSGTTANEHPVHQVLRTGQKLA 297

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
              T W I      V +D  A PI +   +  G     +V             +R D++F
Sbjct: 298 ATETNWLIRADGTRVAVDDRASPIRNSKGKLQGT--VLVVRDISEKLKAAQAIRRRDERF 355

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY------AHKDDVLKTEK 258
             + +      ++  +   I             ++    +           +   L T  
Sbjct: 356 RRVFDSSLVGMALCNKYGRIIDANETYLETIGYSREGLYSADLSWGDITPTQFSGLDTGA 415

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
           +  L +     P +++F   N  +         L ++ +          +    +     
Sbjct: 416 WEELRATGRCRPFEKEFIAQNGMRVPVLIAAVKLLDDEESE-----VAIYTVNLSQLRAA 470

Query: 319 ENLTPETVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
           E       +  P   ++   G    Y N  +   T     +      G+  L   P    
Sbjct: 471 EQRYRMLTNASPQIVWIARPGEDNLYCNDRWYEYTGLTPDE----TRGMGWLRAVPTEHQ 526

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
               +                    ++     S         + N     +   G   + 
Sbjct: 527 GQVAREWSTASRKPETCEFEL---PLRGRDGLSRWHLLRGVPQINSDGVVVEMIGTMTDI 583

Query: 438 VDTRINKRKMEIEVMQ 453
              R  ++++E+   +
Sbjct: 584 DALRQAQQELELADRR 599



 Score = 73.5 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/324 (11%), Positives = 83/324 (25%), Gaps = 20/324 (6%)

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
            + +              QE+  T   +         +   +S         R +  LS 
Sbjct: 37  AQRDVSHTFEVLRLLANLQEEMVTFESSCRGFVIARESTYLDSGLVALEQLPRTYADLSD 96

Query: 314 YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
              +    T   V+  P        G    AN   + +       ++             
Sbjct: 97  QLADNPEQTRRLVELAP--IIAERLG--VAAN--AIQVFIESGEAELMKIARTGRARVQM 150

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
               +   + +   R+     +A    +           MT +     +          I
Sbjct: 151 DEIRSRVAEMIQAERTLLDQRSAGVEFNYY------VAIMTTLLAVLISTGVAIGAWRSI 204

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
           + E     + ++   +        + +  D +   + +G I   N     L     +D+L
Sbjct: 205 DQELAARIVAEQSARLTSENFRVTIHSVDDALVTTDAQGRITLMNEVAKSLIQVS-DDVL 263

Query: 494 RKPFTVFLEQNTPS---VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
            +P     +    S      H + ++L    +    +       +   +++      +  
Sbjct: 264 GQPVDRIFQIQQDSGTTANEHPVHQVLRTGQKLAATETNWLIRADGTRVAVDDRASPIRN 323

Query: 551 S----SCYSLTMHDISEWKQEKNK 570
           S        L + DISE  +    
Sbjct: 324 SKGKLQGTVLVVRDISEKLKAAQA 347



 Score = 37.7 bits (86), Expect = 8.1,   Method: Composition-based stats.
 Identities = 18/225 (8%), Positives = 48/225 (21%), Gaps = 15/225 (6%)

Query: 96  KEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGT 155
              ++   +  G    +  GM         H             +     +  L      
Sbjct: 495 LYCNDRWYEYTGLTPDETRGMGWLRAVPTEHQGQVAREWST-ASRKPETCEFELPLRGRD 553

Query: 156 NLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHS 215
            L     L  +P  + +         G +         +   +  D++            
Sbjct: 554 GLSRWHLLRGVPQINSDGVVVEM--IGTMTDIDALRQAQQELELADRRKDFFLATLSHEL 611

Query: 216 SVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDF 275
                       ++P   +    +     +    +   ++             + +  D 
Sbjct: 612 ------------RNPLTPISNALEAWRAADLSPEELTEVREMLSRQTKQMVRLIDDLLDV 659

Query: 276 HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
             I+  +   K     L+   + S E        +      +  N
Sbjct: 660 SRISGGKIQLKPAILDLRECIQTSIEVAQPLIRQAGHQLTTDLPN 704


>gi|298527921|ref|ZP_07015325.1| PAS/PAC sensor signal transduction histidine kinase
            [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511573|gb|EFI35475.1| PAS/PAC sensor signal transduction histidine kinase
            [Desulfonatronospira thiodismutans ASO3-1]
          Length = 1207

 Score =  297 bits (760), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 96/630 (15%), Positives = 205/630 (32%), Gaps = 44/630 (6%)

Query: 201  DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
                    E+  G    +K    +    SP   + M           A +          
Sbjct: 595  AGLDDEFQELIDGFQYGKKPACALNVSTSPGLQVVMDPGTDCEGCPLAEQYSDRSGFSAR 654

Query: 261  LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
            L               +I  N     +      + +    + +       +     E   
Sbjct: 655  LEVEG---FVLGLITVSIPANLAGDLEEQDLFNSLAWTIAQGIQRIRLEKIRRSQRERLK 711

Query: 321  LTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDD----IEIAGGLSTLLDAPKL 375
                 + +      + +        N ++         +     +E   G        K 
Sbjct: 712  NYERIISRINDGMAIVAPDYRYIIVNDAYQREFGKPREEIEGHTVEELVGKEVFYSKIKP 771

Query: 376  SDNNAIKPVMLYRSDRTCIAASARLHTIQWNR--ENSLAMTFIPFEKANQFPENMPQNGI 433
              + A              A    +    +              +    +          
Sbjct: 772  RLDTA-------------FAGEEVVSEDSFPGLDGVLKYKVMNYYPFYEKDGSVAGVVAT 818

Query: 434  EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
              +  + +  +  +      L ++ E   +GI + +     +  N+  S +FG  +E   
Sbjct: 819  GKDFTEQKKAEDALRESEELLRTVNETVGEGIVLKDASDRFVHWNKTASDIFGLDIEHAR 878

Query: 494  RKPFT----VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG-STKEEKLLSLRIIIKKL 548
             +        F+ ++             +L   +    + +G     +    L+I  + +
Sbjct: 879  GQTPEVFDIKFIHEDGTEYAGDDFPSQHTLRTGEPCNNVIMGIKRNNQSTTWLKINTRPI 938

Query: 549  PFSSC-----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
                        ++  DI+E K  +  L    +  +K +  K +  + V+H+++ P+   
Sbjct: 939  FTPGEAKPYLVVVSFSDITERKHAEKILKSMNQQLQKSNVEKDELFSFVAHDLKAPIAGF 998

Query: 604  IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
            +  +E I N+ F         E  + + +S   +  ++ DLL  ++++ G +    E V 
Sbjct: 999  LSLTE-ILNKYFDDFSMDELREMLSEMHKSSEGLHALLEDLLQWARVKKGMLVYTPESVC 1057

Query: 664  LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
            L++ V+  ISL +  A++K I +  +    +  + AD + +  +  N+L NA+ FT  GG
Sbjct: 1058 LNDLVTAGISLARSVADKKDIDLWNNVPRRM-NLYADQKMIYSVIRNLLFNALKFTYQGG 1116

Query: 724  QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG----EGTGLGLP 779
             + I   H     V + + D G+GM      +       I   + ++G    +GTGLGL 
Sbjct: 1117 NVSIH-AHKQGSMVKIMIHDDGMGMDQDTAARVFA----IDKRKSVKGTDGEKGTGLGLA 1171

Query: 780  LAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            L K  V+ + G+ +I S P +GT +    P
Sbjct: 1172 LCKEFVEQHGGRIWIDSEPGQGTTVNFTAP 1201



 Score =  180 bits (456), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 65/550 (11%), Positives = 163/550 (29%), Gaps = 37/550 (6%)

Query: 59  QESVSNTNYLDSENTFVFDPIP----RTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI 114
           Q +   T+    E     +P        V   +     G    ++    +  G  + + +
Sbjct: 3   QRTSPPTDQGSLEQPVFENPQEILMNAPVG-IFTTTPDGRYLSVNNTFARMHGYDSPRQL 61

Query: 115 GMRLCDVSDILHIDPNNH--IGDLLKRQNTWYG-KTTLWPIEGTNLYVPIDLAALPIYSR 171
              + D++  ++ DP +   +  +L++       +  L    G   +V  +++   I  +
Sbjct: 62  TDSITDIATQIYADPADRDELQGMLEKHGQVTNFECRLRHRSGRIFWVSENISV--IKDK 119

Query: 172 NREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK---------GHSSVEKEKY 222
           +   + ++GF                +  ++  + + +            G++      +
Sbjct: 120 DGNITAYQGFN--QDITERKQIEEAQQESEETINGIIDSSPFSIQMLDPQGYTVCTNPAF 177

Query: 223 DIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQ 282
                  PPP   + N   +        D +++  K   ++  E     +     +  N 
Sbjct: 178 KRLFGAVPPPDYTIFND-PNFDRSGPEYDLLMRFAKGERISFSEHFYNTRRISSHLPDNP 236

Query: 283 YTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE----TVDKCPIPFFVYS- 337
              +     L + + +    +      +     +E    + +     ++KCP    +   
Sbjct: 237 LWLRVEGFPLLDKAGKIKNLVLMHEDITEYKQAEEARIASEQKFKNLIEKCPASVMLLDH 296

Query: 338 HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397
            G + + N   +      + + +     L   +       +  +   +        +   
Sbjct: 297 QGRVEFVNDWHIEKF---ANNKLGKEYFLGRSIHELPGLVSAGVDTEISRVFQGDDVELE 353

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
                      +   +         Q  +      +       +  +  ++    +L S+
Sbjct: 354 NVYFPEFAVGGSG-WVNIRAVPVY-QEGQVAGGILLRENITARKKMETALQQSQQKLRSL 411

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
           +E T D I     EG     +  VS L GY V+++L K F   +      V+   L   L
Sbjct: 412 VENTQDVIYSHTPEGHFTYLSPQVSDLLGYEVQELLGKNFQDLVHPQDLPVVQRGLDNAL 471

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSH 573
             D     E       K+       + +     S            DI+E KQ +  L  
Sbjct: 472 KTDHNHG-EVEYRLLHKDGHYRWFHVRVSFQRNSEGEIESVLGVARDITERKQAEELLRE 530

Query: 574 AKKIAEKESS 583
           +++     ++
Sbjct: 531 SEERTRHLNA 540



 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 8/146 (5%), Positives = 38/146 (26%), Gaps = 7/146 (4%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVS--DILHIDPNNHIGDLLKRQNTWYGKTT 148
                  +++   +  G    ++ G  + ++   ++ +      +      +     + +
Sbjct: 729 PDYRYIIVNDAYQREFGKPREEIEGHTVEELVGKEVFYSKIKPRLDTAFAGEEVVS-EDS 787

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
              ++G   Y    +   P Y ++   +G                    +  ++    ++
Sbjct: 788 FPGLDGVLKYK--VMNYYPFYEKDGSVAGV--VATGKDFTEQKKAEDALRESEELLRTVN 843

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHL 234
           E       ++               +
Sbjct: 844 ETVGEGIVLKDASDRFVHWNKTASDI 869


>gi|90419214|ref|ZP_01227124.1| PAS sensor histidine kinase/response regulator [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90336151|gb|EAS49892.1| PAS sensor histidine kinase/response regulator [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 671

 Score =  297 bits (760), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 81/528 (15%), Positives = 174/528 (32%), Gaps = 38/528 (7%)

Query: 307 NHPSLSAYFDEGENLTPETVDKCPI--PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364
                +      E      VD       + +   G +   N        Y + + +    
Sbjct: 14  EQTERATASASDEGRYRLLVDAITDYAIYMLDPDGIITSWNAGAQRFKGYTADEILG--S 71

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
             S              + + +  ++            ++ +     A   +     +  
Sbjct: 72  HFSRFFVPADREAGLPQRALRIAAAEGR---FETEGWRVRKDGGQFWA-HVVLDPILHPD 127

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSK 483
              +    I  +  + +  +  ++    Q   ++   SD  I +++ EG + + N    +
Sbjct: 128 GTLIGYAKITRDLTERKQAQEDLQRSEKQFRLLVNGVSDYAIYMLDPEGRVTNWNFGAER 187

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           + GY  ++I+ + F+ F               + +       E       K+       +
Sbjct: 188 IKGYSRDEIVGEHFSRFFSPEDRERG-EPQRGLATALKDGRFETEGWRIRKDGTRFWASV 246

Query: 544 IIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKES--SHKSDFLARVSHEIR 597
           ++ ++       +       D++E K+ +  L+ A +   +             ++H+  
Sbjct: 247 VVDRVDDEEGRVIGFAKITRDVTERKEAQEALAKANEALAQSQKMEAIGQLTGGIAHDFN 306

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
             LTA+IG  E +  +R G +  P      +           +   +L  ++    + +L
Sbjct: 307 NLLTAVIGSLE-MARKRVG-IDPPAVQSLIDNALEGARRGASLTQRMLAFAR----RQDL 360

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
               V L E V+   + ++     + + I T F   +     D   ++   LN++ NA  
Sbjct: 361 APRTVDLAELVAGITAFLERSIGPE-LSIETRFPAGLSPAHIDPNQLETALLNLMVNARD 419

Query: 718 FTPSGGQIIIST-----------THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
               GG + I                    V L V DTG GM    +++A +PF      
Sbjct: 420 AMDGGGVVTIEADEAAIEVARPGGLAVGRYVRLAVIDTGEGMDAETVKRAAEPFFTTKG- 478

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
               G+GTGLGL +   +V  + G   I S   +GT +E+  P+   +
Sbjct: 479 ---VGKGTGLGLSMVHGLVSQSGGGLQIHSRKGEGTRVELWLPVATAA 523



 Score = 77.8 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 22/272 (8%), Positives = 70/272 (25%), Gaps = 8/272 (2%)

Query: 65  TNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI 124
           T     E  +       T    + +D  G +   +    +  G  A +++G         
Sbjct: 20  TASASDEGRYRLLVDAITDYAIYMLDPDGIITSWNAGAQRFKGYTADEILGSHFSRFFVP 79

Query: 125 LHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIV 184
              +       L         +T  W +          +   PI   +    G+    I 
Sbjct: 80  ADREAGLPQRALRIAAAEGRFETEGWRVRKDGGQFWAHVVLDPILHPDGTLIGYAK--IT 137

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSS-VEKEKYDIFSQQSPPPHLRMKNKVSSL 243
                    +   +R +K+F  L      ++  +   +  + +       ++  ++   +
Sbjct: 138 RDLTERKQAQEDLQRSEKQFRLLVNGVSDYAIYMLDPEGRVTNWNFGAERIKGYSRDEIV 197

Query: 244 TEYY-----AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE 298
            E++         +  + ++      ++     +      +  ++        + +    
Sbjct: 198 GEHFSRFFSPEDRERGEPQRGLATALKDGRFETEGWRIRKDGTRFWASVVVDRVDDEEGR 257

Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330
              +       +      E      E + +  
Sbjct: 258 VIGFAKITRDVTERKEAQEALAKANEALAQSQ 289


>gi|303245364|ref|ZP_07331648.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfovibrio fructosovorans JJ]
 gi|302493213|gb|EFL53075.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfovibrio fructosovorans JJ]
          Length = 1137

 Score =  297 bits (760), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 89/607 (14%), Positives = 200/607 (32%), Gaps = 55/607 (9%)

Query: 229 SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288
                 R  ++V           D     + P +   E+   E  D   +  +    +  
Sbjct: 416 EAETTSRAFSEVPDAPLSRFLDRDDASLLREPGVRVGEA---ELLDAQGLPHSVILHRAV 472

Query: 289 FGTLQNN-SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANP 346
           + + +   +               S      E       +   +  F +   G     NP
Sbjct: 473 YASAKTEIAGLVGVLYDVSELKKASEKLRLAEEKYRGIFENLALGIFRMTPDGQAVDVNP 532

Query: 347 SFLLLTKYKSVDDIEIAGG--LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
           + L +   KS+D++    G  +  L    +  + +    +    +       +       
Sbjct: 533 ALLAMLGVKSLDELTRRRGNLVEVLFSGQQRFEEHISSALDEQATATFETWFA------- 585

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
                 +         A++        G+  +       +R +      L  +L+     
Sbjct: 586 RPDAGIITANVNLRLVADREGYLAYVEGVVEDVTKRHEAERALRESQEMLRIVLDNIPQL 645

Query: 465 IAIINREGIILSTNRAVSKLFGY-PVEDILRK-PFTVFLEQNTPSVMNHYLTEILSLDLR 522
           ++  ++    +  NRA  + FG+  ++++  +  + + L +     +     +++  +  
Sbjct: 646 VSWKDKSLRYIGANRAFIEFFGFADLDELKGRDDYALPLSREDMDAVRATDIDVMRNN-- 703

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIA 578
           +T+             + L I    L       +    T  D+++    + +L  ++K+ 
Sbjct: 704 RTVAGELAARNVRGADVLLEIKKVPLHDDRGAVVGVLSTSEDVTQKVSLERQLLQSQKM- 762

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
                        ++H+    LT+II  +E+          +    +    + ++G+   
Sbjct: 763 ----EAIGTLAGGIAHDFNNILTSIINSAELAL---LDLPEDEPIGDDMRRVLKAGHRGS 815

Query: 639 DIVNDLLDISKI-ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697
            +V  +L  ++  ++G     F  +++ + V EA  L++       I I           
Sbjct: 816 RLVKQILSFTRPSQAG-----FAAINVADVVGEAAGLIKASVPR-NIKIVLDVPERAVTC 869

Query: 698 LADLRSVKQIALNILSNAIHFTPS-GGQIIISTTHT-------------SNEEVILRVRD 743
            AD   + QI +N+ +NA       GG + +S                 +     L + D
Sbjct: 870 RADPTQLHQIVMNLCTNAFQAMRETGGLLTVSLAEEALDETQAGHVGARAGRYAKLSIVD 929

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TG G+    L+K   PF         +GEGTGLGL + + +V ++ G   + S P   T 
Sbjct: 930 TGPGIPPEILDKIFDPFFTTKQ----KGEGTGLGLAVVRGIVKSHRGAVRVVSQPGTRTD 985

Query: 804 IEIIFPL 810
            ++  PL
Sbjct: 986 FDVYLPL 992



 Score = 86.2 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 46/439 (10%), Positives = 111/439 (25%), Gaps = 27/439 (6%)

Query: 82  TVRFTWNIDAHGYLKEISEELPKTIGNY-AFKMIGMRLCDV-SDILHIDPNNHIGDLLKR 139
            +   +  DA G  +  +       G     +       +V    L    +     LL+ 
Sbjct: 388 PIPLYFK-DAAGAYRGCNPAFRHWCGLPGEAETTSRAFSEVPDAPLSRFLDRDDASLLRE 446

Query: 140 QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199
                G+  L   +G  L   + L      S   E +G    G+++            + 
Sbjct: 447 PGVRVGEAELLDAQG--LPHSVILHRAVYASAKTEIAGL--VGVLYDVSELKKASEKLRL 502

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT------EYYAHKDDV 253
            ++K+  + E                        +     +  LT               
Sbjct: 503 AEEKYRGIFENLALGIFRMTPDGQAVDVNPALLAMLGVKSLDELTRRRGNLVEVLFSGQQ 562

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK----ESFEYLSHRNHP 309
              E       E+++   +  F   +    T       + +                   
Sbjct: 563 RFEEHISSALDEQATATFETWFARPDAGIITANVNLRLVADREGYLAYVEGVVEDVTKRH 622

Query: 310 SLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
                  E + +    +D  P    +         AN +F+    +  +D+++     + 
Sbjct: 623 EAERALRESQEMLRIVLDNIPQLVSWKDKSLRYIGANRAFIEFFGFADLDELKGRDDYAL 682

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
            L    +    A    ++   +   +A       ++      + +        +     +
Sbjct: 683 PLSREDMDAVRATDIDVMR--NNRTVAGELAARNVRGAD---VLLEIKKVPLHDDRGAVV 737

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS-TNRAVSKLFGY 487
                  +       +R++     ++ +I   T  G    +   I+ S  N A   L   
Sbjct: 738 GVLSTSEDVTQKVSLERQLLQS-QKMEAI--GTLAGGIAHDFNNILTSIINSAELALLDL 794

Query: 488 PVEDILRKPFTVFLEQNTP 506
           P ++ +       L+    
Sbjct: 795 PEDEPIGDDMRRVLKAGHR 813


>gi|91778586|ref|YP_553794.1| signal transduction histidine kinase (STHK) with CheB and CheR
            activity [Burkholderia xenovorans LB400]
 gi|91691246|gb|ABE34444.1| signal transduction histidine kinase (STHK) with CheB and CheR
            activity [Burkholderia xenovorans LB400]
          Length = 1303

 Score =  297 bits (760), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 118/781 (15%), Positives = 255/781 (32%), Gaps = 65/781 (8%)

Query: 75   VFDPIPRTVRFTW-----NIDAH-GYLKEISEEL----------PKTIGNYAFKMIGMRL 118
            VF       R+ +     + D   G  +E+S                 G       G R 
Sbjct: 399  VFHFALNPKRYLFLGRSESTDPDSGPFQEVSRAWRIYQRSPVTAAVVSGYRFSAPGGRRD 458

Query: 119  CDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAA-----LPIYSRNR 173
               S     + +    +L+              I   +  +    +       P      
Sbjct: 459  EFPSASRGSNRSKGYAELVNSTLLEEHHAASVLINAAHQVLYTSGSTDEYLRQPTGEPTG 518

Query: 174  EFSGFRGFGI---VHVN-RVDNDPRALGKRLD----KKFSHLHEIKKGHSSVEKEKYDIF 225
                    G+   + +  R  +   A G   +         +                + 
Sbjct: 519  NILDMAREGLRLKLRIVLRRASQDEAAGPVSEVVSDGGAPAVKITVTRPFDTAHTGKALL 578

Query: 226  SQQSPPPHLRMKNKVSS--LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY 283
               +  P       ++   +     H +  L+T +  L ++ E       +    N    
Sbjct: 579  VIFARVPVAERPGSLAPTGVDSDLWHLESELRTTQVELGSTIEELEESNSELRVSNEEIL 638

Query: 284  TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN------LTPETVDKCP----IPF 333
            +  +   +     + S E L   N          G+       L+ +  +          
Sbjct: 639  SMNEELRSANEELETSKEELQALNEQLNLVNSQLGQKVHQLEVLSEDVANLLASTEIATL 698

Query: 334  FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393
             +  H  +    PS   +      D       ++ +L  P           ++       
Sbjct: 699  LLDRHAVIKRFTPSAARIFGLALADI---DRPITNVLGNPLGDTLLEDVQRVMSAQTGQ- 754

Query: 394  IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
              A   + T+             P+      P          +    +      +    +
Sbjct: 755  --AEKEIQTLT---GEWYVRRITPYIAVQGTP-PAGVVVTWNDITHVK----ASDERSRR 804

Query: 454  LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
            L ++++ ++D + + +  G +++ NRA + ++GY   + L    +  L          ++
Sbjct: 805  LAAVVQDSNDAMTVFDLNGRLIAWNRAATAIYGYTEAEALCMTVSDMLPSGARQDHLDFI 864

Query: 514  TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM----HDISEWKQEKN 569
                  +   +    T   TK  ++L + I +  L  +  +++ +     ++++      
Sbjct: 865  RYAEHNEALHSY--ETQRVTKSGRVLDIWITLSILSDNQGHAVAVATTERELTDRSLSNT 922

Query: 570  KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
            +L    +   +    K++FLA + HE+R PL A+    +++ ++    +   + +     
Sbjct: 923  QLRERAERLAQADRRKNEFLAMLGHELRNPLAALCSAGDLLASE---SVDARQKVWAVGV 979

Query: 630  IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
            I R G  +  +VN++LD+++I SG + L+ + V+L+  V  A+ + +    E+   +  +
Sbjct: 980  IQRQGQAMTQLVNEMLDLTRIASGSIKLNRQAVTLETVVQSALEVCRPIVEERHHTLSVA 1039

Query: 690  FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749
                   +  D   + Q+  NI+ NA  +T  GG+I +S T T    + LRVRD G G+ 
Sbjct: 1040 LPEEPVLMFVDPTRLSQVIENIVINAAKYTEPGGKIDLSATRT-GRRLSLRVRDNGAGIA 1098

Query: 750  NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
               L      F Q P        G G+GL + + +V+ + G     S    G+   +  P
Sbjct: 1099 PSMLNTLFDMFVQGPLPHGQLHNGLGVGLSVVRRLVELHGGTVEAVSDGKTGSEFIVDLP 1158

Query: 810  L 810
            L
Sbjct: 1159 L 1159


>gi|167577648|ref|ZP_02370522.1| sensory box histidine kinase [Burkholderia thailandensis TXDOH]
          Length = 709

 Score =  296 bits (759), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 99/633 (15%), Positives = 208/633 (32%), Gaps = 28/633 (4%)

Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE 245
             R + D  A   R D          +     ++++                  + S   
Sbjct: 86  EIRKEFDALAPLVRDDPVQQRRLAALRTLLKRKQDELAATIALRKSEGFDAAQAIVSSDA 145

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
                D           T ++     +E                G L      SF Y+  
Sbjct: 146 GKIFMDRARTMVNDMEATVQQQLRALRERARATRDVAIAVGLASGLLTLVVCVSFGYVMR 205

Query: 306 RNHPSLSAYFD---EGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIE 361
           R     SA  D       L   T+             G + + N     +T   +   + 
Sbjct: 206 RLLLVESAASDDLFAQRELLHVTLASIGDGVIATDVDGRITFFNRVAEEMTALAADAVVG 265

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                  L     L+      P  +    +   A       +       L +        
Sbjct: 266 QPIEQ-VLTFRHALTQRVIDNPARVAVERKRIAALPVHTRFV-GRGGGELPVDGNAAPTF 323

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
           +   + +    +  +  +    + +  +        +EA  + + ++NREG I+  N   
Sbjct: 324 DAKGKLVGAVLVVRDVSERERAEERFRLA-------VEAAPNAMIMVNREGKIVLVNSQA 376

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLL 539
            K F Y   D++ +   + + +   +    +          + +   +   G  ++    
Sbjct: 377 EKFFDYVRGDMIGQGIDMLVPERFRAGHATHRGAFFGKPDARPMGAGRDLFGLRRDGSEF 436

Query: 540 SLRIIIKKLPFSSCYSLT--MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
            + I +  +  S    +   + DI+  K+ +++L    +   + +     F    SH+++
Sbjct: 437 PVEIGLNPITTSEGAFVLCSITDITARKRAEHELRRRSEELARSNQDLEQFAYVASHDLQ 496

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
            PL A+ G  ++++ +  G L + R  E+  +       +  +++DLL  S++  G++  
Sbjct: 497 EPLRAVAGPLQLLQRRYQGQL-DARADEFIGHAVDGATRMQSLIDDLLSYSRV--GRLED 553

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
             +PV  +  + EA+  +     E    I       +P +      +  +  N++ NAI 
Sbjct: 554 ARQPVDCERVLDEALRNLSAAIRESGAQITHD---RLPIVHGIAAQLVLLFQNLIGNAIK 610

Query: 718 FTPSG--GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           F       +I +      +  V  RVRD G+G+     E+    F ++    +    GTG
Sbjct: 611 FRSKDRIARIHLEADTRDDAWV-FRVRDNGIGIDPQYFERIFLIFQRLH--TRREYPGTG 667

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           LGL L K +V+ + G+  + S P +GT      
Sbjct: 668 LGLALCKRIVEHHGGRIVVESEPGRGTTFSFAL 700



 Score = 50.8 bits (120), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 35/366 (9%), Positives = 79/366 (21%), Gaps = 24/366 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV------SDILHIDPNNHIGDLLKRQNT 142
            D  G +   +    +     A  ++G  +  V           ID    +    KR   
Sbjct: 239 TDVDGRITFFNRVAEEMTALAADAVVGQPIEQVLTFRHALTQRVIDNPARVAVERKRIAA 298

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
               T      G    +P+D  A P +    +  G     +V             +   +
Sbjct: 299 LPVHTRFVGRGGG--ELPVDGNAAPTFDAKGKLVGA--VLVVRDVSERERAEERFRLAVE 354

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
              +   +      +                  +   +  L               +   
Sbjct: 355 AAPNAMIMVNREGKIVLVNSQAEKFFDYVRGDMIGQGIDMLVPERFRAGHATHRGAFFGK 414

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
                    ++ F           +        S+ +F   S  +  +      E    +
Sbjct: 415 PDARPMGAGRDLFGLRRDGSEFPVEIGLNPITTSEGAFVLCSITDITARKRAEHELRRRS 474

Query: 323 PETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD-NNAI 381
            E                       F  +  +   + +    G   LL        +   
Sbjct: 475 EELARSNQDL-------------EQFAYVASHDLQEPLRAVAGPLQLLQRRYQGQLDARA 521

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
              + +  D      S     + ++R   L     P +      E +        +   +
Sbjct: 522 DEFIGHAVDGATRMQSLIDDLLSYSRVGRLEDARQPVDCERVLDEALRNLSAAIRESGAQ 581

Query: 442 INKRKM 447
           I   ++
Sbjct: 582 ITHDRL 587


>gi|328952482|ref|YP_004369816.1| multi-sensor signal transduction multi-kinase [Desulfobacca
            acetoxidans DSM 11109]
 gi|328452806|gb|AEB08635.1| multi-sensor signal transduction multi-kinase [Desulfobacca
            acetoxidans DSM 11109]
          Length = 1341

 Score =  296 bits (759), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 129/776 (16%), Positives = 265/776 (34%), Gaps = 92/776 (11%)

Query: 79   IPRTVRFTWNIDAHGYLKEISEELPK---TIGNYAFKM------IGMRLCDVSDILHIDP 129
             P   R        GYL  +   +       G  +  +      +  R+ ++S +   + 
Sbjct: 610  GPAAARVV----VEGYLSSLGSRMEDVFDLFGRISSSLEQSEQQLKRRVAELSVLY--EA 663

Query: 130  NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRV 189
               +   L   +   G   +         + ++  A+ +   +      +GF       +
Sbjct: 664  ARKLASSLYIPDLLEGVLRVL-----VEQLGVEKCAVRLLDEDG-LLHMKGF-------L 710

Query: 190  DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH 249
                 A  + L                V                L  +   S +      
Sbjct: 711  GLPSEAREQVLKPSPESFLGQCLLTLQVISVSDTTTVPDRLQGLLEDETLASLVLAPITT 770

Query: 250  KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
            +   L             +   +E F ++        Q    +++ + E    L      
Sbjct: 771  ETLTLGVLTAASSQKGYFAKEHEEFFQSLAG------QLGLAVRSANMEEALRLDESRLE 824

Query: 310  SLSAYFDEGENLTPETVD-KCPIPFFVY--SHGNLFYANPSFLLLTKYK-SVDDIEIAGG 365
            ++       +    E  D        +     G L + N    +LT    S   +E    
Sbjct: 825  AVWRLSQMTKETLKEITDFALEEGVRLTKSRIGYLAFMNEDETVLTMQAWSQTAMEECAV 884

Query: 366  LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF-----IPFEK 420
                L  P  +     + V         I               +  +       IP  +
Sbjct: 885  PDKPLIYPLATTGLWGEAVRQRH---PIITNDYASPNPYKKGYPAGHVALKRHLNIPVFE 941

Query: 421  ANQFPENMPQNGIEPEDVDTRINKRKMEI-----EVMQLC-----------------SIL 458
            +++          + E  ++ + +  + +     +VM+                    ++
Sbjct: 942  SDRIVAVAGVGNKDEEYDESDVRQLTLLMNGMWWQVMRKRAEEALAAEVERGIYFQKLLI 1001

Query: 459  EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK-PFTVFLEQNTPSVMNHYLTEIL 517
              + DGI   + EG I + N+  +K+FGY  E++L K     F   N    ++  + +  
Sbjct: 1002 HTSMDGIVASDMEGTIRTFNKPAAKIFGYDPEEVLNKMNLREFYPSNLAQDIDRKIHDPG 1061

Query: 518  SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHA 574
                    +  TL   K+  L+ + +  + L  +         + D+ E K+ + +L  +
Sbjct: 1062 YGGAGILEDYETLMRAKDGTLVPIWLSARLLYENDREIGMISHIKDLRERKRMEEELLRS 1121

Query: 575  KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYANYIDRS 633
            +++A           A +SHEI+ PL  I GF+ +V+K+    P   P+ +E  + I   
Sbjct: 1122 ERLA-----ALGKMAAHISHEIKNPLMVIGGFARQVLKDTAQSP---PKNLEKLHIIVDE 1173

Query: 634  GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693
               + D + ++   +K          +P +L+E + E    ++    EK I +      +
Sbjct: 1174 VKRLEDFLVEVGSYAKFS----EPQKQPGNLNELIRETCQRLEPSLQEKNIDLVLKLDPD 1229

Query: 694  IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753
            +P IL D   ++Q+ LNI  N I    +GG +  +T   +   ++++V DTG G+     
Sbjct: 1230 LPEILFDPGHIRQVLLNIAKNGIEAMDAGGTLSFTTGRRA-GRILVQVSDTGSGIPPEIQ 1288

Query: 754  EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            EK  +PF         + +G+GLGL +++ +++A+ G+  I S P KGT + +  P
Sbjct: 1289 EKIFQPFF------SSKPKGSGLGLAISQKIIEAHQGEITIESEPQKGTRVILFLP 1338


>gi|91780564|ref|YP_555771.1| multi sensor hybrid histidine kinase [Burkholderia xenovorans LB400]
 gi|91693224|gb|ABE36421.1| Multi sensor hybrid histidine kinase [Burkholderia xenovorans LB400]
          Length = 1344

 Score =  296 bits (759), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 103/683 (15%), Positives = 225/683 (32%), Gaps = 42/683 (6%)

Query: 149  LWPIEGTNLYVPIDLAALP---IYSRNREFSGFRGFGIVHVNR-VDNDPRALGKRLDKKF 204
            +  + G+        A  P   I    RE    +   ++                 D   
Sbjct: 539  VLYVSGSTDEYLRQPAGEPTGNILDMAREGLRLKLRIVLRRATQDQTVSPVSEVVSDGGA 598

Query: 205  SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS--LTEYYAHKDDVLKTEKYPLL 262
              +                +    +          ++   +     H +  L+T +  L 
Sbjct: 599  PGVKITVTQPFDTAHTGKALLVVFARVAVADRPASLAPTGVDSDLWHLESELRTTQVELG 658

Query: 263  TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
            ++ E       +    N    +  +   +     + S E L   N          G+ + 
Sbjct: 659  STIEELEESNSELRVSNEEILSMNEELRSANEELETSKEELQALNEQLNVVNSQLGQKVH 718

Query: 323  P---------ETVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                        +    I   +     +     P    +      D       ++ +L  
Sbjct: 719  ELEMLSEDVTNLLASTEIATLLLDGHAVIKRFTPRAARIFGLALADI---DRPITNVLGN 775

Query: 373  PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
            P           +L         A   + T+             P+              
Sbjct: 776  PLGDALLEDVQRVLSAQTGQ---AEKEIETVT---GEWYVRRITPYIAVKGAS-PAGVVV 828

Query: 433  IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
               +    +      +    +L ++++ ++D + + +  G +++ NRA + ++GY   + 
Sbjct: 829  TWNDITHVK----ASDERSRRLAAVVQDSNDAMTVFDLNGRLMAWNRAATAMYGYTEAEA 884

Query: 493  LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
            L    +  L          ++      +   +    T   TK  +++ + I +  L    
Sbjct: 885  LGMTVSDMLPPGARQDHLDFIRYAAHNEALHSY--ETQRVTKGGRVVDIWITLSILSDDQ 942

Query: 553  CYSLTM----HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
             +++ +     ++++      +L    +   +    K++FLA + HE+R PL A+    +
Sbjct: 943  GHAVAIATTERELTDRSLSNAQLRERAERLAQADRRKNEFLAMLGHELRNPLAALCSSGD 1002

Query: 609  VIKNQRFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
            ++ ++      +PR        I R G  +  +VN++LD+++I SG + L  + V+L   
Sbjct: 1003 LLASETI----DPRQKSWAVGVIQRQGRSMTQLVNEMLDLTRITSGSIELRRQAVTLKAV 1058

Query: 668  VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727
            +  A+ + Q   +E+   +  S  +    +  D   + Q+  NI+ NA  +T  GG I +
Sbjct: 1059 IQSAVEVCQPIIDERHHTLSVSLPDEPVLMYVDPTRLSQVVENIVINAARYTEPGGHISL 1118

Query: 728  STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
             T   +   + LRV+D G G+    L      F Q P        G G+GL + + +V+ 
Sbjct: 1119 -TATRTGRRLSLRVKDNGRGIPASMLSTLFDMFVQGPVPYGQLHNGLGVGLSVVRRLVEL 1177

Query: 788  NMGKFYIFSTPAKGTLIEIIFPL 810
            + G     S    G+   +  PL
Sbjct: 1178 HGGSVRAISDGRTGSEFIVDLPL 1200



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 36/125 (28%), Gaps = 8/125 (6%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL-HIDPNNHIGDLLKRQNTWYGKTT 148
           D +G L   +       G    + +GM + D+       D  + I      +     +T 
Sbjct: 861 DLNGRLMAWNRAATAMYGYTEAEALGMTVSDMLPPGARQDHLDFIRYAAHNEALHSYETQ 920

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                G  + + I L+ L                I    R   D      +L ++   L 
Sbjct: 921 RVTKGGRVVDIWITLSIL--SDDQG-----HAVAIATTERELTDRSLSNAQLRERAERLA 973

Query: 209 EIKKG 213
           +  + 
Sbjct: 974 QADRR 978


>gi|255936779|ref|XP_002559416.1| Pc13g09940 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211584036|emb|CAP92063.1| Pc13g09940 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1879

 Score =  296 bits (759), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 94/607 (15%), Positives = 202/607 (33%), Gaps = 77/607 (12%)

Query: 262  LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
             T+ + S  + + F T +  Q T+     +    S       S              + +
Sbjct: 816  PTTGDESNLQDQSFCTASPLQDTRPSNPLSPTQQSSRQASTNSLYAQLQRELPRPFSDTI 875

Query: 322  TPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL---- 375
                ++  P+  F+     G + + N  F         D    +         P      
Sbjct: 876  AQLMLNSIPLHLFLAKPQSGEVIWTNSKF---------DAYRRSQHQEQKFRDPWQNIHS 926

Query: 376  -SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
                +                   R+     +        F      +   E +   G  
Sbjct: 927  SESEHVHTKWANALRTGAQFTERVRVRRF-NDESAYRWFIFRANPLLSSTGEVLYWIGSF 985

Query: 435  PEDVDTRINKRKMEIEVMQL------CSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
             +  +  I + +   E  +        +   +    +        ++  N   +   G P
Sbjct: 986  LDIHEQHIAELEAIQEREKFAIDAKYRAFSNSIPQVVFEATENRGLIFVNEQWNLYTGQP 1045

Query: 489  VEDILRKPFTVFLEQNTPSVMNH------------------------YLTEILSLDLRQT 524
            +E+     F   +  +                                L E++   +   
Sbjct: 1046 LEEAHDLGFAKHVHPDDLEKCGELSLNRTSQSADQNDSGPYEFMVGSALDELVKRGIASL 1105

Query: 525  LEKI---------TLGSTKEEKLLSLRIIIKKLP------FSSCYSLTMHDISEWKQEKN 569
             +               ++        + + ++         + +  T  DI++ K  + 
Sbjct: 1106 QQDENGRVFYSTEIRLRSRGGDFRWHLVRVVRVKTSSFGSEEASWYGTCTDINDRKNLER 1165

Query: 570  KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
            +L+ A +    +   K+ F + +SHEIRTPL  I+G    I + +     +       + 
Sbjct: 1166 ELNKAMQQLNHQMESKTKFFSNMSHEIRTPLNGILGTIPFILDTQL----DSDQRRMLDT 1221

Query: 630  IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
            I  S   + ++V+++LD+S++E+GKM++      +   + + I  +   A +K + I   
Sbjct: 1222 IQNSSTNLRELVDNILDVSRVEAGKMSMVKSWFHIRSMIEDVIDTIASRAIDKGLEINYL 1281

Query: 690  FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH---------TSNEEVIL 739
               ++P  ++ D   ++Q+ +N+L NA+ FT  G +I I              +   +  
Sbjct: 1282 IGEDLPSMVIGDRFRIRQVLINLLGNAVKFTAQG-EIHICCDMYRDPSANPDDTQAFMNF 1340

Query: 740  RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
             V DTG G ++ + E+ M+ F Q+  +   +  G+GLGL L+K +V+ + GK    S   
Sbjct: 1341 EVVDTGKGFSSQDAERLMQRFSQLGENGTQQHAGSGLGLFLSKQLVEMHGGKLTPSSKEG 1400

Query: 800  KGTLIEI 806
            +G     
Sbjct: 1401 QGAKFSF 1407


>gi|1136289|gb|AAC47300.1| histidine kinase A [Dictyostelium discoideum]
          Length = 2150

 Score =  296 bits (759), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 90/346 (26%), Positives = 154/346 (44%), Gaps = 26/346 (7%)

Query: 492  ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
               K     +  +        + + +       +E       K    L + +  K +   
Sbjct: 1289 WNMKFLAELIHPDDKQKFISEIKKTI-TRETAIMEIECRMRKKYGGYLYIIMRGKVVSNE 1347

Query: 552  S-------CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
            +         + T+ D++  K  +  L   K+ AE+ +  KS F+A VSHE+RTPL+ +I
Sbjct: 1348 TSFKDNSLRMAGTLRDMTSRKDMQR-LILEKEAAEEANKAKSAFVATVSHEVRTPLSGVI 1406

Query: 605  GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
            G S+++         +    +Y   I +S   +L I+ND+LD SK+ES ++ +   P S+
Sbjct: 1407 GVSDLLLETNL----SEEQRDYVQTIQKSSQALLTIINDILDYSKLESRQLKMETLPFSI 1462

Query: 665  DEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG 723
             E     I ++ + AN+  + I      N+PRI+  D   ++Q+ LN LSNAI FT  G 
Sbjct: 1463 IETCQAVIHMLSVAAND-DVDILLRVPPNVPRIIFGDAMRMRQVLLNRLSNAIKFTSRGH 1521

Query: 724  QII-IST--------THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
             +  IS         T      + + + DTG+G+     +   +PF Q  NS   +  GT
Sbjct: 1522 VLTDISVDDSIPPTNTEEEIIHLCITIEDTGIGIPQSLFDSIFEPFSQADNSTTRKYGGT 1581

Query: 775  GLGLPLAKAMVDA-NMGKFYIFSTPAKGTLIEIIFP-LYDTSHPHD 818
            GLGL + K +++    G   + S   +G+  + I P L   + P D
Sbjct: 1582 GLGLSITKRLIEEVMGGTIQVSSIVGQGSKFKCIIPFLLPNTSPSD 1627


>gi|332094548|gb|EGI99594.1| phosphate regulon sensor kinase PhoR [Shigella boydii 5216-82]
          Length = 431

 Score =  296 bits (759), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 74/427 (17%), Positives = 152/427 (35%), Gaps = 37/427 (8%)

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             +L       I     L  + W     L +         +        G+    +  + 
Sbjct: 33  WFLLASVTGLLIWHFWNLLRLSW----WLWVDRSMTPPPGRGSWEPLLYGLHQMQLRNKK 88

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            +R++   + +  S  E+  D + +   EG I   N    ++ G    +   +     L 
Sbjct: 89  RRRELGNLIKRFRSGAESLPDAVVLTTEEGGIFWCNGLAQQILGLRWPEDNGQNILNLLR 148

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
               +               +   +         + L +R++           +   D++
Sbjct: 149 YPEFTQYL----------KTRDFSRPLNLVLNTGRHLEIRVMPYTHKQ---LLMVARDVT 195

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  Q +                + +F A VSHE+RTPLT + G+ E++      PL    
Sbjct: 196 QMHQLEG--------------ARRNFFANVSHELRTPLTVLQGYLEMM---DEPPLEGAV 238

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             +  + +      +  +V  LL +SKIE+   +L  E V +   +       Q  + +K
Sbjct: 239 REKALHTMREQTQRMEGLVKQLLTLSKIEAAPTHLLNEKVDVPMMLRVVEREAQTLSQKK 298

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           +        N + ++  +   ++    N++ NA++ TP G  I +      +      V 
Sbjct: 299 Q-TFTFEIDNGL-KVSGNEDQLRSAISNLVYNAVNHTPEGTHITVRWQRVPHG-AEFSVE 355

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G G+    + +  + F ++  ++  +  G+GLGL + K  V+ +  +  I ST  KGT
Sbjct: 356 DNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHAVNHHESRLNIESTVGKGT 415

Query: 803 LIEIIFP 809
               + P
Sbjct: 416 RFSFVIP 422


>gi|83311264|ref|YP_421528.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82946105|dbj|BAE50969.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 860

 Score =  296 bits (759), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 101/601 (16%), Positives = 186/601 (30%), Gaps = 42/601 (6%)

Query: 233 HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL 292
            +R       L         +    +  LL   E  + + +D    N+ +       G  
Sbjct: 135 EVRAVAATDGLGVNPLRLQRLADKSRLTLLPGLERLVVQYQDESRQNVARLRYGFSLGLY 194

Query: 293 QNNSKESFEYLSHRNHPSLSAYFDEGENLTPE------TVDKCPIPFFVYSH-GNLFYAN 345
              +     +      P      +E              +D            G + + N
Sbjct: 195 LVLAVLGLSWFGVF-RPMARRLREEFSAHQAAVEHNNLILDSMGEGIIGLDTRGAVTFVN 253

Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405
           P+   +  +   + +            P  S   +    +          +       + 
Sbjct: 254 PAASEMLGFAPGEMLGQHLHPLIHHSHPDGSQYPSEHCPLSRTLASAEGCSVEDEWFWRK 313

Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465
           +  +            +     +       +  D    +R +E       SIL+A  D I
Sbjct: 314 DGSSFPVHYGSTPIVND--GVLIGAVVTFRDLSDVTATRRALEASEQIKSSILDAAQDAI 371

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN-TPSVMNHYLTEILSLDLRQT 524
             I+R G+++  N A   +FG    D L       +            L  + S      
Sbjct: 372 ITIDRSGMVVEFNPAAEHIFGRRSSDALGHEIADLIIPEIHREAHRRGLARVASGQASSV 431

Query: 525 L--EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES 582
           L       G       + L + I  LP    ++  + DI+E KQ +  L  ++K+     
Sbjct: 432 LGKRMEMSGLHARGHEIPLELTITHLPDHGLFTAFIRDITEQKQTEAALRRSQKM----- 486

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
                    ++H+    L  I G  E+++    G   +   ++      RS     D+  
Sbjct: 487 EAVGQLTGGIAHDFNNLLGIITGNLELLERTVQG---SESGMKRVQTALRSARRGADLTR 543

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702
            LL  S+ +            + +A+S    +VQ     K I +RT  A +      +  
Sbjct: 544 RLLSFSRQDPKAQG--KSRTDIADAISGMQEMVQRSLT-KVIEVRTQMAADTWHADINRS 600

Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTT--------------HTSNEEVILRVRDTGVGM 748
             +   LN+  NA    P GG + +  +               T    V++ V DTG G+
Sbjct: 601 EFEDCLLNLCLNARDAMPQGGVLTVEASNVEVDDEMRRADPNLTPGRYVVVSVSDTGTGI 660

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
               +++  +PF         RG+GTGLGL +A      + G   ++S P  GT   +  
Sbjct: 661 PKEIVDRIFEPFFTTK----ERGKGTGLGLAMAYGFARRSGGHIRVYSEPGIGTTFRLYL 716

Query: 809 P 809
           P
Sbjct: 717 P 717



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/321 (9%), Positives = 81/321 (25%), Gaps = 28/321 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD-------LLKRQN 141
           +D  G +  ++    + +G    +M+G  L  +    H D + +  +       L   + 
Sbjct: 243 LDTRGAVTFVNPAASEMLGFAPGEMLGQHLHPLIHHSHPDGSQYPSEHCPLSRTLASAEG 302

Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
                   W  +G++   P+   + PI + +    G                R   +  +
Sbjct: 303 CSVEDEWFWRKDGSSF--PVHYGSTPIVN-DGVLIGA--VVTFRDLSDVTATRRALEASE 357

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLKTEK 258
           +  S + +  +           +             R  + +          +   +  +
Sbjct: 358 QIKSSILDAAQDAIITIDRSGMVVEFNPAAEHIFGRRSSDALGHEIADLIIPEIHREAHR 417

Query: 259 YPLLTSEESSLPE------QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
             L                +        ++   +     L ++   +             
Sbjct: 418 RGLARVASGQASSVLGKRMEMSGLHARGHEIPLELTITHLPDHGLFTAFIRDITEQKQTE 477

Query: 313 AYFDEGENLTPETVDKCPIPFFVY--SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
           A     + +  E V +          +   +   N   L  T   S   ++        L
Sbjct: 478 AALRRSQKM--EAVGQLTGGIAHDFNNLLGIITGNLELLERTVQGSESGMKRVQTA---L 532

Query: 371 DAPKLSDNNAIKPVMLYRSDR 391
            + +   +   + +   R D 
Sbjct: 533 RSARRGADLTRRLLSFSRQDP 553


>gi|322832015|ref|YP_004212042.1| integral membrane sensor hybrid histidine kinase [Rahnella sp.
           Y9602]
 gi|321167216|gb|ADW72915.1| integral membrane sensor hybrid histidine kinase [Rahnella sp.
           Y9602]
          Length = 953

 Score =  296 bits (759), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 96/374 (25%), Positives = 165/374 (44%), Gaps = 31/374 (8%)

Query: 446 KMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           ++E        I+ +   GI+I+   +G+ + +N                  +   L Q 
Sbjct: 355 RLEEHEQFNHKIVASAPVGISILRISDGVNILSNELA-------------HNYISMLTQE 401

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564
                   +T I+       ++ I    TK    + L  +  +          + D+S  
Sbjct: 402 DRQ----RITRIICDQQTNFVDVI----TKNNNNIQLSFVHSRYRNEDVAICVLIDVSAR 453

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
            + +  L      AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R  
Sbjct: 454 VKMEESLQEMANAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTQGLPQGVDR-- 510

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
                ++ S  L+L I++D+LD SKIES ++ +  +  S  E ++           +KR+
Sbjct: 511 -LVTAMNNSSALLLKIISDILDFSKIESEQLKIEPQEFSCREVITHIAGNYLPLVVKKRL 569

Query: 685 LIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVILRVR 742
            +     +N+P     D   ++Q+  NIL+NAI FT +G  ++ + T       +  +VR
Sbjct: 570 GLYCFIEHNVPLSFNGDPVRLQQVISNILNNAIKFTDTGCIVLNVRTC---GNYLEFQVR 626

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTGVG+   E+ +   PF Q+    Q   +GTGLGL + + +++   G   + S P  G+
Sbjct: 627 DTGVGIPEREITRLFDPFFQVGTGVQRHFQGTGLGLAICEKLINLMDGDIEVESEPGLGS 686

Query: 803 LIEIIFPLYDTSHP 816
              +  PLY+ + P
Sbjct: 687 SFTVRIPLYNATFP 700


>gi|289674477|ref|ZP_06495367.1| PAS [Pseudomonas syringae pv. syringae FF5]
          Length = 595

 Score =  296 bits (759), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 89/427 (20%), Positives = 171/427 (40%), Gaps = 28/427 (6%)

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK--R 445
            + R      A         E    +T  P   A +      + GI  E +         
Sbjct: 193 IARRFGAPIEALAKAADRIGEGDYEVTL-PISSAAEMNLLTRRFGIMAEALRQHQATNVD 251

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           ++     +L ++L++  DG+ +I+R+G +   N    +  G+    +             
Sbjct: 252 ELLAGQQRLQAVLDSIDDGLLMIDRQGHLEHLNPVAQRQLGWDESRLGHSLGEALGRPEL 311

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISE 563
              ++  L         + L         E +LL+  +              + +HD++E
Sbjct: 312 DEQLHLVLRGGTLERAPEDLAIEI---DGESRLLTYSMTPVSHTKGHILGAVMVLHDVTE 368

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            +  +                +S+F+ R SHE+RTP+T  +  +  +  +R       R 
Sbjct: 369 QRAFE--------------RVRSEFVLRASHELRTPVTG-MHMAFGLLQERLHFAPESRE 413

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            +  N +      ++ ++NDLL+ S+ ++G   L   P S++  + EA +  +  A E+ 
Sbjct: 414 ADLLNTVTEEMQRLMQLINDLLNFSRYQNGLQKLKLAPCSIETLLQEAKARFEDQAQEQD 473

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
           I++       +PR+ AD   ++++  N+L NA+  TP  G I +       E  I+ V D
Sbjct: 474 IVLMLDMQEPMPRLHADQSQLERVLDNLLDNALRHTPPNGLIRLQ-ARRHGERAIISVED 532

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
            G G+   +  +  +PF Q+      +  G GLGL L K +V  + G+  ++S P +GT 
Sbjct: 533 NGEGIAYGQQGRIFEPFVQV----GRKKGGAGLGLALCKEIVQLHGGRMGVYSRPGQGTQ 588

Query: 804 IEIIFPL 810
             +  PL
Sbjct: 589 FYMALPL 595



 Score = 45.4 bits (106), Expect = 0.039,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 69/241 (28%), Gaps = 9/241 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G+L+ ++    + +G    + +G  L +      +D       L+ R  T      
Sbjct: 274 IDRQGHLEHLNPVAQRQLGWDESR-LGHSLGEALGRPELDEQ---LHLVLRGGTLERAPE 329

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
              IE       +  +  P+        G     ++H          +  R +      H
Sbjct: 330 DLAIEIDGESRLLTYSMTPVSHTKGHILGA--VMVLHDVTEQRAFERV--RSEFVLRASH 385

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           E++   + +      +  +    P  R  + ++++TE    +   L  +       +   
Sbjct: 386 ELRTPVTGMHMAFGLLQERLHFAPESREADLLNTVTE-EMQRLMQLINDLLNFSRYQNGL 444

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
              +    +I       K  F                   P L A   + E +    +D 
Sbjct: 445 QKLKLAPCSIETLLQEAKARFEDQAQEQDIVLMLDMQEPMPRLHADQSQLERVLDNLLDN 504

Query: 329 C 329
            
Sbjct: 505 A 505


>gi|120601868|ref|YP_966268.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4]
 gi|120562097|gb|ABM27841.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4]
          Length = 1001

 Score =  296 bits (759), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 116/724 (16%), Positives = 208/724 (28%), Gaps = 85/724 (11%)

Query: 178 FRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK 237
             G   V   R          RL +  +       G +        I      P      
Sbjct: 5   AAGSAEVQALRERIARLEDENRLLRLCARFEGPAPGEALGSLLPEIIAPASDAPLVYAYV 64

Query: 238 NKVSSLTEYYAHKDDVLKTEKY------PLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291
           + + +    + ++   +    +       LL   ++  P           +      +  
Sbjct: 65  SDMQTHELLFVNRSLTMAVGAWQGRKCYELLQGRDTPCPFCTSGRLQRNPERPVVWEWRN 124

Query: 292 LQNNS------------KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-- 337
            +                            +      E        +D      F+    
Sbjct: 125 PRLGRWFRCIDRCIHWPDGRPVRYELAVDITDMREAQEDLLRFRAALDASAEAIFLVDLE 184

Query: 338 HGNLFYANPSFLLLTKYKSVDDIE----------IAGGLSTLLDAPKLSDNNAIKPVMLY 387
            G     N     +  Y     +            A G   +LD+            +  
Sbjct: 185 EGRFLDVNSGACTMLGYDRDTLLGLGLCGIRRSMAADGCRQILDSIAAGAVLENVETVYL 244

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
             D T +        +       LA+         +      +     E V +   +  +
Sbjct: 245 HRDGTFVPVEVGARLVDRAGGPRLAIMVARDVSEKRKARRAMEVRYLYEHVLSSCARELL 304

Query: 448 EIE--VMQLCSILEATSDGIAII---------NREGII---------------LSTNRAV 481
                   L  +L A   G             + EG +                  N A+
Sbjct: 305 SRSCSESTLVGVLGALRQGAGACRAYIFENYEDAEGRLCCSQRYESSAPGVRPELDNPAL 364

Query: 482 SKLFGYP--VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
             +         +        +              + +  +R  L             +
Sbjct: 365 QNIIYASEAPNWLHELRKGRAVVGPVADQPLPERDVLQAQGIRSLLVLPIFARGVWCGFV 424

Query: 540 SLRIIIKKLPFSSCYSLTMHDISE-------WKQEKNKLSHAKKIAEKESSHKSDFLARV 592
                  +  +     L +   SE         + + +L+ + + AE+ S  KS FLA +
Sbjct: 425 GFDDTRTERTWQGGDILFLQTASEILGAALERHRAEAELAASHQRAEEASRAKSVFLANM 484

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHEIRTPL AIIG +E+   +              +    S   +L +VNDLLD+S++ES
Sbjct: 485 SHEIRTPLNAIIGLTELTLQEPISQGVGENLRGVLH----SAEALLAVVNDLLDLSRVES 540

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNI 711
           G+++L     S        + L+   A+ K +      A ++P  +  D   ++Q+ LN+
Sbjct: 541 GRLHLESVEFSPSRLARGVVRLMTHVADRKGLDFELYIARDVPPTVTGDPARLRQVLLNL 600

Query: 712 LSNAIHFTPSGG---QIIISTTHTSN------------EEVILRVRDTGVGMTNYELEKA 756
           + NA+ FT  GG    +      T                +   V DTG+G+        
Sbjct: 601 VGNALKFTDEGGVSLTVTPCICSTDTGGGILKGGNGGVRGLRFTVTDTGIGIPPDRQACI 660

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
            + F Q   S   R  GTGLGL +++ +V+   G+  + S P KG+      P       
Sbjct: 661 FESFVQADESTARRFGGTGLGLAISRRLVEMMGGRLELRSEPGKGSEFWCDVPFASEGAA 720

Query: 817 HDCI 820
            D I
Sbjct: 721 RDGI 724



 Score = 55.4 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/353 (9%), Positives = 85/353 (24%), Gaps = 14/353 (3%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG-KTTLW 150
            G   +++      +G     ++G+ LC +   +  D    I D +         +T   
Sbjct: 185 EGRFLDVNSGACTMLGYDRDTLLGLGLCGIRRSMAADGCRQILDSIAAGAVLENVETVYL 244

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
             +GT  +VP+++ A  +   +R         +          R   +        L   
Sbjct: 245 HRDGT--FVPVEVGARLV---DRAGGPRLAIMVARDVSEKRKARRAMEVRYLYEHVLSSC 299

Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270
            +   S    +  +              +      Y   +  +  +++Y           
Sbjct: 300 ARELLSRSCSESTLVGVLGALRQGAGACRAYIFENYEDAEGRLCCSQRYESSAPGVRPEL 359

Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330
           +      I              +  +              +         L      +  
Sbjct: 360 DNPALQNIIYASEAPNWLHELRKGRAVVGPVADQPLPERDVLQAQGIRSLLVLPIFAR-- 417

Query: 331 IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390
              +    G + + +       +   +  ++ A  +  L  A +     A       R++
Sbjct: 418 -GVW---CGFVGFDDTRTERTWQGGDILFLQTASEI--LGAALERHRAEAELAASHQRAE 471

Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
               A S  L  +       L       E   Q P +          + +   
Sbjct: 472 EASRAKSVFLANMSHEIRTPLNAIIGLTELTLQEPISQGVGENLRGVLHSAEA 524


>gi|94264477|ref|ZP_01288265.1| PAS:Response regulator receiver:CHASE [delta proteobacterium
           MLMS-1]
 gi|93455108|gb|EAT05332.1| PAS:Response regulator receiver:CHASE [delta proteobacterium
           MLMS-1]
          Length = 876

 Score =  296 bits (759), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 98/681 (14%), Positives = 223/681 (32%), Gaps = 73/681 (10%)

Query: 184 VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL 243
             V    +  RA  +       +L        +++ E      +      +     ++++
Sbjct: 39  AEVLDQLSALRAHLESALNSRLYLVRSLAAQIAIQPEIDRREFEWLAAEMIAADPVINTI 98

Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303
                   + +   K          L   E    +  +   ++ +        +    Y+
Sbjct: 99  ALARDGVINHIYPRKGHEAALGLDLLAHPERRAVVERSIAQRRGFVAGPVEMVEGGEAYI 158

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVD-DIEI 362
           S++             +     VD       +     L  A  +        +++  +  
Sbjct: 159 SYKPVFLAPDPETGRGDDFWGMVD-----ITIRHPKLLEVAGVA----PGPANLEVALRG 209

Query: 363 AGGLST---LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
             GL     L              + +     +   A+            +  +      
Sbjct: 210 RDGLGAAGELFWGDGAVFAAEPLTMGVTLPSGSWEIAALPTGGWPTASPLTPFLWGAGLL 269

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRK--MEIEVMQLCSILEATSDGIAIINREGIILST 477
            A             P  +  ++      ++    +   ++E  +  +  ++ +G +   
Sbjct: 270 IALLAATLTWFLARIPVRLRQQVAAATASLKASESKYRELVENANSIVLKMDLQGRVTFF 329

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTP---SVMNHYLTEILSLDLRQTLEKITLGSTK 534
           N    + FGY  E+I+ +     +          +   + ++     + T         +
Sbjct: 330 NEYAQRFFGYREEEIMGREVVGTIVPGRDLAGRNLAAMIKDVFENPEQYTSN-ENENRKR 388

Query: 535 EEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSH------- 584
           +   + +    + +             +DI+  K+ +++L   ++  E+  +        
Sbjct: 389 DGSRVWVSWTNRAIYEDGELIGLLCIGNDITRLKEAEDQLRRHQQELEEMVNARTDELLT 448

Query: 585 -----------KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
                      KS FL+ +SHEIRTPL  IIGFS +       P       +Y   I  +
Sbjct: 449 ANAELNRVSAYKSRFLSAMSHEIRTPLQTIIGFSNLALEGGSQPP-----RQYLEMIKTA 503

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693
           G+ +L+++N +LD++KIESG++ L        E + + +      A ++ +   TS    
Sbjct: 504 GDTLLELINGILDLAKIESGRLELAERCFKPAEFIGKTLEPYAFAARQRGLAFDTSIDPA 563

Query: 694 IP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN------------------ 734
           +P  ++ D   + Q+ +N++ NA+ FT  G +I +S    ++                  
Sbjct: 564 VPGEVVGDPARLTQVLVNLVGNALKFTEEG-EIAVSVRPAADDADRRPTVGAGRAEVAPP 622

Query: 735 -------EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
                    +   VRD+G G+   +  +    F Q   +      G GLGL +A ++V+ 
Sbjct: 623 AASDATSGLLHFTVRDSGSGIAAEQQGRIFNRFAQGEGAASP-HGGHGLGLAIAASLVEL 681

Query: 788 NMGKFYIFSTPAKGTLIEIIF 808
             G+ ++ S P +G+      
Sbjct: 682 MGGEIWLESRPGEGSSFHFTI 702



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/267 (10%), Positives = 67/267 (25%), Gaps = 13/267 (4%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK-----RQ 140
              +D  G +   +E   +  G    +++G  +             ++  ++K      +
Sbjct: 317 VLKMDLQGRVTFFNEYAQRFFGYREEEIMGREVVGTIVPGRDLAGRNLAAMIKDVFENPE 376

Query: 141 NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
                +      +G+   V +      IY  + E  G     I +      +     +R 
Sbjct: 377 QYTSNENENRKRDGS--RVWVSWTNRAIY-EDGELIGL--LCIGNDITRLKEAEDQLRRH 431

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV-SSLTEYYAHKDDVLKTEKY 259
            ++   +   +         + +  S         M +++ + L       +  L+    
Sbjct: 432 QQELEEMVNARTDELLTANAELNRVSAYKSRFLSAMSHEIRTPLQTIIGFSNLALEGGSQ 491

Query: 260 PLLTSEES-SLPEQEDFHTINLNQYTKKQYFGTLQ-NNSKESFEYLSHRNHPSLSAYFDE 317
           P     E            IN      K   G L+             +     +    +
Sbjct: 492 PPRQYLEMIKTAGDTLLELINGILDLAKIESGRLELAERCFKPAEFIGKTLEPYAFAARQ 551

Query: 318 GENLTPETVDKCPIPFFVYSHGNLFYA 344
                  ++D       V     L   
Sbjct: 552 RGLAFDTSIDPAVPGEVVGDPARLTQV 578


>gi|332535485|ref|ZP_08411266.1| aerobic respiration control sensor protein ArcB [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332035095|gb|EGI71610.1| aerobic respiration control sensor protein ArcB [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 772

 Score =  296 bits (759), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 75/400 (18%), Positives = 167/400 (41%), Gaps = 25/400 (6%)

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
                +  E  + +  ++++  + M   SI++++ D     +  G+    N+   ++ G 
Sbjct: 126 RAIEELRREIAERKKTQQELAQQSMLQRSIVDSSPDLFYYRDNNGVFAGCNKMFEEVMGK 185

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
              +++ K        +  S +     E+       T++   +G     +     +    
Sbjct: 186 SSSELIGKTVEQIFPSHFLSEVLKTDKEVEQSHKALTID---VGYEVNGETRWFELRKLP 242

Query: 548 LPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
                           DI+  K+    L             K  F+A +SHE+RTPL  I
Sbjct: 243 FINDEGDYIGLLGFGRDITSRKEAAQALET-------AYKDKGKFIATLSHELRTPLNGI 295

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +G + ++ +       N +   + N I  S   + +I ND++D+ KI+  ++++    ++
Sbjct: 296 VGLTRMLLDTDL----NKQQRSWGNTIFSSAETLGNIFNDIIDLDKIDRDQLDIVTNSIN 351

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA--DLRSVKQIALNILSNAIHFTPS 721
           + + +++ ++   L A +K +       N +  I A  D   ++Q+  N+++NA+ FT  
Sbjct: 352 VSDFINDVVNFAGLIAEQKELEFDIKR-NGVLDIYAQLDPTRLRQVVWNLINNAVKFTQQ 410

Query: 722 GGQIIISTTHT---SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
           G ++ +  +         ++++V DTG G+   +L      + + P+ +     G+G+GL
Sbjct: 411 G-KVTLECSRENRVGGPWLVMKVSDTGQGIPPEQLAHIFDMYYKAPDLKGTNAIGSGIGL 469

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
            + KA+V A  G   + ST  +G+   +  PL     P +
Sbjct: 470 AVTKALVSAMKGIITVNSTEGEGSCFTVQIPLSLCVAPTE 509



 Score = 54.6 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 14/122 (11%), Positives = 38/122 (31%), Gaps = 5/122 (4%)

Query: 79  IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK 138
                 F +  D +G     ++   + +G  + ++IG  +  +     +         ++
Sbjct: 157 DSSPDLFYYR-DNNGVFAGCNKMFEEVMGKSSSELIGKTVEQIFPSHFLSEVLKTDKEVE 215

Query: 139 RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
           + +        + + G       +L  LP  +   ++ G  GFG         +     +
Sbjct: 216 QSHKALTIDVGYEVNGETR--WFELRKLPFINDEGDYIGLLGFG--RDITSRKEAAQALE 271

Query: 199 RL 200
             
Sbjct: 272 TA 273


>gi|323692858|ref|ZP_08107084.1| sensor protein [Clostridium symbiosum WAL-14673]
 gi|323503087|gb|EGB18923.1| sensor protein [Clostridium symbiosum WAL-14673]
          Length = 939

 Score =  296 bits (759), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 92/488 (18%), Positives = 183/488 (37%), Gaps = 35/488 (7%)

Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA-SARLHTIQWNRE 408
                 S+           +    K     A  P  L  +              I     
Sbjct: 299 REFPKGSLSTYYDKFIRDYVFSEDKEKMRRAGSPDFLRNTLSAQHPVYDIDFRRIYPEG- 357

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL---CSILEATSD-- 463
             + +         +            +  + ++ + + + +        +I+   S   
Sbjct: 358 -LIWVRSRFSIAEIKDGRVSKVIFANMQIHEQKMKELEEQQQKRLYFESQNIIRGLSVFY 416

Query: 464 -GIAIINR-EGIILSTN---RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT---- 514
             +  I+         N       +L      + L+  ++ F+ +         L+    
Sbjct: 417 HSVFYIDLLTESFQPFNLMDDLACRLGSSTDYEYLKTVYSYFIHEEDRKRFMEELSACDI 476

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL--------TMHDISEWKQ 566
                                     +R+ I      +   +           +  + ++
Sbjct: 477 RRRITGGDMIYALEYR-RNYGGAYGWMRMHIILAESRNGVPVKVILAAHSVEEEKEQEER 535

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
            +  L  A + A++ +  KS+FLA++SH+IRTPL AI G S +  +Q   P    +  + 
Sbjct: 536 NRKALLAAYEAAKQANEAKSNFLAQMSHDIRTPLNAITGMSSIALSQAEDP---EKVRDC 592

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
              I  S + +++++ND+LD+SKIE GK+ L   P SL E + +  S++   A  K+  +
Sbjct: 593 LKKITLSSHHLIELINDVLDMSKIEKGKLELAEAPFSLKELLGDVESILSPQACAKKQEL 652

Query: 687 RTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQI-----IISTTHTSNEEVILR 740
                 +    +  D   ++Q+ +N+++NAI +TP GG+I      +S+       ++  
Sbjct: 653 CFHNPKSPHDHLCGDAGRIRQVLINLITNAIKYTPDGGRIDIAVQEVSSHLQGYGCLVFT 712

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V DTG+GM+   L+    PF +  +++    +GTGLG+P+A  +V A  G   + S P K
Sbjct: 713 VADTGIGMSKDFLDYIFVPFSRAEDAKACHIQGTGLGMPIALGIVTAMQGNIQVESEPGK 772

Query: 801 GTLIEIIF 808
           G+   +  
Sbjct: 773 GSRFTVTL 780


>gi|239787730|emb|CAX84245.1| Sensor protein [uncultured bacterium]
          Length = 992

 Score =  296 bits (759), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 102/553 (18%), Positives = 193/553 (34%), Gaps = 59/553 (10%)

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNL--FYANPSFLLLTKYKSVD--- 358
           + R   +         N      D+      +   G+L    AN SF  +      +   
Sbjct: 128 ALRALRASREELRASRNNFKSIFDQAHDGILLVEQGSLRCTMANNSFCNMVGRTQQEVTR 187

Query: 359 ----DIEIAGGLSTLLDAPKLSDNNAIKP---VMLYRSDRTCIAASARLHTIQWNRENSL 411
               D+E+   L  +  + +  D  AI     + L       +     + T+    +  L
Sbjct: 188 LHLLDMELGHALVQIFTSYRQQDATAITTHHDLALQGEAGVVVYVDLSVSTVVLEGQRYL 247

Query: 412 AMTFIPFEKANQFPENMPQ------NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465
              F    +  Q               ++ +     +  +++  + +++   L A+  G+
Sbjct: 248 MGIFRDATQRRQAQARQRAHAERLHLLMKLDRRARELTVQELCDQAVEIAVELTASQAGM 307

Query: 466 AIINREGIILSTNRAVSKLFGYPVE--DILRKPFTVFLEQNTPSVMNHYLTEILS----- 518
             I  +        +             +  +P        T  +    +  +       
Sbjct: 308 LAILSDD------HSACTHLSRSRHLQKLDTQPLQAGSVAVTTGIWADCIRRLQPVVVND 361

Query: 519 ----------LDLRQTLEKITLGSTKEEKLLSLRII------IKKLPFSSCYSLTMHDIS 562
                           + +       +   +   +                  L   D+ 
Sbjct: 362 GGSWSEGYGLPTGPVPVARCMSVPVVDGTRVRKILTVCNKVEPYDDHDVQQLQLIFQDVE 421

Query: 563 ---EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
              E ++ + KL  AK+ AE  +  K+DFLA +SHEIRTP+  ++G ++++         
Sbjct: 422 KFIERRRWEEKLQLAKEEAEASNRAKTDFLAAMSHEIRTPMNGVLGMADLVLRTPL---- 477

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
             +   Y   I RSG  +L I+ND+LDISKI +G + L      L E V + I +     
Sbjct: 478 TDQQRHYVETIHRSGRTLLRIINDILDISKIHAGHLALELLQFDLAEVVQDVIDMFAERV 537

Query: 680 NEKRILIRTSFANNIPRI--LADLRSVKQIALNILSNAIHFTPSGGQ---IIISTTHTSN 734
             K +     F      +  L D   + QI  N+L NAI FT  G     + +      +
Sbjct: 538 KTKGLTFAIEFPEEGMPVHLLGDPYRLSQILFNLLGNAIKFTERGSIGLFVEVLEERAWD 597

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
             +  +V DTG+G++    ++  + F Q   S   +  GTGLGL + + +V    G+  +
Sbjct: 598 VLLRFKVTDTGIGISPDYCQRLFQAFTQEDLSITRKFGGTGLGLAITQKLVGMMAGELTV 657

Query: 795 FSTPAKGTLIEII 807
            ST  +G++ +  
Sbjct: 658 ESTQGQGSIFQFT 670



 Score = 58.1 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 14/157 (8%), Positives = 41/157 (26%), Gaps = 1/157 (0%)

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLFGY 487
                       R ++ ++        SI +   DGI ++ +        N +   + G 
Sbjct: 121 HMLRHVHALRALRASREELRASRNNFKSIFDQAHDGILLVEQGSLRCTMANNSFCNMVGR 180

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
             +++ R         +    +     +  +  +    +    G       + L +    
Sbjct: 181 TQQEVTRLHLLDMELGHALVQIFTSYRQQDATAITTHHDLALQGEAGVVVYVDLSVSTVV 240

Query: 548 LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
           L           D ++ +Q + +     +        
Sbjct: 241 LEGQRYLMGIFRDATQRRQAQARQRAHAERLHLLMKL 277


>gi|254503637|ref|ZP_05115788.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Labrenzia alexandrii DFL-11]
 gi|222439708|gb|EEE46387.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Labrenzia alexandrii DFL-11]
          Length = 516

 Score =  296 bits (759), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 94/249 (37%), Positives = 154/249 (61%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I+E +        A++ AE  +  KS FLA +SHE+RTPL AI+GFSE++K++  GP+ N
Sbjct: 239 IAELETANAMSDEARRRAEAANVAKSRFLATMSHELRTPLNAILGFSEIMKDEVLGPMKN 298

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
             Y  Y+  I  SG  +L+++N++LD+S+IE+G+  L  E + L+E V E  S++ + AN
Sbjct: 299 DTYKSYSADIHGSGQHLLNLINEILDLSRIEAGRHELQEESLYLEEVVDECGSMMTVRAN 358

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
            K I++  +   ++PR+ AD R+++Q+ LN++SNA+ FTP GG++ I    TS++   + 
Sbjct: 359 AKNIMLHHTLEPDMPRVWADERALRQVVLNLISNAVKFTPVGGEVHIKVGRTSDDGQYVS 418

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           + DTG G+   E+   ++ FGQ  ++ +    GTGLGL + +A+V  + GKF I S    
Sbjct: 419 ITDTGPGIPEDEIPTVLEAFGQGSHAIKSAEPGTGLGLSIVQALVGMHDGKFVIKSQLGV 478

Query: 801 GTLIEIIFP 809
           GT   +  P
Sbjct: 479 GTEAIMSLP 487


>gi|86742857|ref|YP_483257.1| PAS/PAC sensor hybrid histidine kinase [Frankia sp. CcI3]
 gi|86569719|gb|ABD13528.1| PAS/PAC sensor hybrid histidine kinase [Frankia sp. CcI3]
          Length = 657

 Score =  296 bits (759), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 82/543 (15%), Positives = 172/543 (31%), Gaps = 86/543 (15%)

Query: 318 GENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIA------------- 363
             +L    ++  P     V   G +   N     L  Y   + +                
Sbjct: 4   SSDLASGLLEAAPDAIVAVRDDGAIVLVNTQAERLFGYTRDELVGQPVEILIPVGVRAVH 63

Query: 364 -GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
               +     P+     A   +   R D +   A   L  ++                  
Sbjct: 64  PDHRNRYFADPRPRPMGAGMELAGRRRDGSEFPAEISLSPLETEEGTI------------ 111

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
                   +    +  D +  +        +   +LEA  D I  +  +G I+  N    
Sbjct: 112 -------VSAAVRDVTDRKRAEA-------KFRGLLEAAPDAIIGVRPDGQIVLVNAQAE 157

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK--ITLGSTKEEKLLS 540
           +LFGY  ++++ +P  + +     +V   +     +    + +          +      
Sbjct: 158 RLFGYTRDELVGQPVEILIPVGVRAVHPDHRNRYFAAPRPRPMGAGLQLAARRRNGSEFP 217

Query: 541 LRIIIKKLPFSSCYSLT--MHDISEWKQEKNKLSHAKKIAEKES-----------SHKSD 587
           + I +  L       ++  + D+++  + + +    +  A++ +                
Sbjct: 218 VEISLSPLETEEGILVSAAVRDVTDRLEAQAEGERLRVEAQRRNFEAQLHQSQRLESLGQ 277

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN-------PRYIEYANYIDRSGNLVLDI 640
               V+H+    L  +I ++  +  +                 +     I R+ +    +
Sbjct: 278 LAGGVAHDFNNLLGVVINYASFVAEEVAQAAATQTAGGRWSDVLRDIEQIQRAADRATAL 337

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILAD 700
            + LL   + E     +    + L++ V++  +L+      + I +       +  ILAD
Sbjct: 338 THQLLTFGRRE----TVQPRVLDLNQVVTDLENLL-HRTLGEHIELHIHLQPELWPILAD 392

Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTT--------------HTSNEEVILRVRDTGV 746
              ++Q+  N+  NA    P GG + I T                 +     +RV D+G 
Sbjct: 393 PGQIEQVLTNLAVNARDAMPDGGVLTIDTANITIDPDYAGERPGVKAGPHARIRVSDSGT 452

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           GM    L +  +PF         +GEG+GLGL     ++    G   I+S P  GT I  
Sbjct: 453 GMPPEVLARVFEPFFTTKP----KGEGSGLGLATVYGIISQAGGNTDIYSEPGVGTTIRC 508

Query: 807 IFP 809
           + P
Sbjct: 509 LLP 511



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/242 (8%), Positives = 57/242 (23%), Gaps = 18/242 (7%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP--NNHIGDLLKRQNTWY----G 145
            G +  ++ +  +  G    +++G  + ++   + +     +H                 
Sbjct: 25  DGAIVLVNTQAERLFGYTRDELVGQPV-EILIPVGVRAVHPDHRNRYFADPRPRPMGAGM 83

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +      +G+    P +++  P+ +             V          A  + L +   
Sbjct: 84  ELAGRRRDGS--EFPAEISLSPLETEEGTIVSAA----VRDVTDRKRAEAKFRGLLEAAP 137

Query: 206 HL---HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
                         V  +   +F         +    +  +     H D   +    P  
Sbjct: 138 DAIIGVRPDGQIVLVNAQAERLFGYTRDELVGQPVEILIPVGVRAVHPDHRNRYFAAPRP 197

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
               + L         N +++  +     L+                 L A  +      
Sbjct: 198 RPMGAGLQL--AARRRNGSEFPVEISLSPLETEEGILVSAAVRDVTDRLEAQAEGERLRV 255

Query: 323 PE 324
             
Sbjct: 256 EA 257



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/260 (8%), Positives = 68/260 (26%), Gaps = 11/260 (4%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI----LHIDPNNHIGDLLKRQNTWYGK 146
             G +  ++ +  +  G    +++G  +  +  +    +H D  N      + +    G 
Sbjct: 145 PDGQIVLVNAQAERLFGYTRDELVGQPVEILIPVGVRAVHPDHRNRYFAAPRPRPMGAGL 204

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                    +   P++++  P+ +             V       + +A G+RL  +   
Sbjct: 205 QLAARRRNGSE-FPVEISLSPLETEEGILVSAA----VRDVTDRLEAQAEGERLRVEAQR 259

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
            +   + H S   E     +         +   V +   + A +       +       +
Sbjct: 260 RNFEAQLHQSQRLESLGQLAGGVAHDFNNLLGVVINYASFVAEEVAQAAATQTAGGRWSD 319

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
                ++     +       Q     +  + +      ++    L            E  
Sbjct: 320 VLRDIEQIQRAADRATALTHQLLTFGRRETVQPRVLDLNQVVTDLENLLHRTLGEHIELH 379

Query: 327 DKCPIPFF--VYSHGNLFYA 344
                  +  +   G +   
Sbjct: 380 IHLQPELWPILADPGQIEQV 399


>gi|86132863|ref|ZP_01051454.1| two-component system sensor histidine kinase/response regulator
            [Dokdonia donghaensis MED134]
 gi|85816569|gb|EAQ37756.1| two-component system sensor histidine kinase/response regulator
            [Dokdonia donghaensis MED134]
          Length = 1216

 Score =  296 bits (759), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 117/729 (16%), Positives = 249/729 (34%), Gaps = 51/729 (6%)

Query: 120  DVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGF 178
            D      ++  N  +   +    ++  +  + P +G      +     P+   N      
Sbjct: 356  DRVHPDDLELWNVSVQTAIDSGISYDIEHRVCPPDGVQKV--VRSICEPVVGPNGNVISL 413

Query: 179  RGFGIVHVNRVDNDPRALGKRLDKKFSH-------LHEIKKGHSSVEKEKYDIFSQQSPP 231
            +G                  R  ++          + +       V+ ++  +       
Sbjct: 414  KG--TAQDITEQRLLDQELIRAKEEAEKSKNHFNNIIDNIGDPVFVKDDQSRLLVVNDAF 471

Query: 232  PHLRMKNKVSSLTEYYAHKDDVLKTEK-----YPLLTSEESSLPEQEDFHTINLNQYTKK 286
              L   +++  + +  A      + +        L++    S+ E+         Q    
Sbjct: 472  CKLFGFDRLDIIGKTLAEDVTKEERDAFLEIDRKLISDGIESINEESITIRDGETQRIST 531

Query: 287  QYFGTLQNNSKESFEYLSHRNHPS---------LSAYFDEGENLTPETVDKCPIPFFVYS 337
            +    + N  +     + H                   +  E      +        V++
Sbjct: 532  RKTRFIDNEGEVFIVGVIHDITERFKTETIIKEAKERAEANERRFRILMQNLEAGVVVHA 591

Query: 338  HGN-LFYANPSFLLLTKY--KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394
                +   N     +     +++ D  +      L++  K     +  PV      +  I
Sbjct: 592  PDTSIVQCNDRASEILSIDQEAIQDKALRYVNPKLINLDKSPLALSEYPVNKIARTKESI 651

Query: 395  AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI----- 449
                 +  +  N +     T   F   N   E      +  +  + R N++         
Sbjct: 652  NNQI-IGLLGDNDKEIKWTTLNGFPVLNDVGEITEIVTVFIDITEQRQNEKDKLKAKLLL 710

Query: 450  --EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED--ILRKPFTVFLEQNT 505
                 +L         G  ++   G+ +  ++ +  ++G+         +     +  + 
Sbjct: 711  DKTENELSDAQALAKIGSWLVRPSGMKMEWSKEMYNIWGFDYGKKLPDYESVVERVHPDD 770

Query: 506  PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY--SLTMHDISE 563
              ++ + + + ++      +E       + +K +                 + T  DI+E
Sbjct: 771  MELLKNAIDKAITKGEPYNIEYRICIPNRPQKTIRAICQPVMGEDGKVINLAGTNQDITE 830

Query: 564  WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             K+   +L  AK+ AE+    KS FLA +SHE+RTP+  I+GFSE+++ +         Y
Sbjct: 831  QKKLSGELISAKEKAEESDRLKSAFLANLSHEMRTPMNGILGFSELLRRKNISEEKKDIY 890

Query: 624  IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            +E      + G+ +L  +++++DISKIES  +N+    ++L+  + +  S  QL      
Sbjct: 891  LELLE---KEGHRLLSFISNIVDISKIESNIINIENSHLNLNSLIDDLYSKYQLKLEGTN 947

Query: 684  ILIRTS--FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV-ILR 740
            I +  +   ++    I  D   + QI  N+L NAI FT  G    I   +T  EE+    
Sbjct: 948  IKLEVNKALSDTDSAIETDENKLVQILSNLLENAIKFTKEGS---IEFGYTLKEEILQFY 1004

Query: 741  VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
            V+D+G+G+   E +     F Q    Q     G GLGL + K ++    G  +I S   +
Sbjct: 1005 VKDSGIGIDEEEQKNIFDRFTQGKREQTHNL-GVGLGLSIVKGLIKILNGSVWIESKIGE 1063

Query: 801  GTLIEIIFP 809
            G++     P
Sbjct: 1064 GSIFYFTIP 1072



 Score = 55.4 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/411 (8%), Positives = 99/411 (24%), Gaps = 48/411 (11%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI-GDLLKRQNTWY 144
            +  D    L  +++   K  G     +IG  L +       D    I   L+       
Sbjct: 455 VFVKDDQSRLLVVNDAFCKLFGFDRLDIIGKTLAEDVTKEERDAFLEIDRKLISDGIESI 514

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVD-------NDPRALG 197
            + ++   +G    +              E       G++H             + +   
Sbjct: 515 NEESITIRDGETQRISTR--KTRFIDNEGEV---FIVGVIHDITERFKTETIIKEAKERA 569

Query: 198 KRLDKKFS-HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256
           +  +++F   +  ++ G      +   +         L +  +             ++  
Sbjct: 570 EANERRFRILMQNLEAGVVVHAPDTSIVQCNDRASEILSIDQEAIQDKALRYVNPKLINL 629

Query: 257 EKYPLLTSEES-----------SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
           +K PL  SE             +          +            + N+  E  E ++ 
Sbjct: 630 DKSPLALSEYPVNKIARTKESINNQIIGLLGDNDKEIKWTTLNGFPVLNDVGEITEIVTV 689

Query: 306 RNHPSLSAYFD----EGENLTPETVDKCPIPFFVYSHGNLFY--------ANPSFLLLTK 353
               +     +    + + L  +T ++      +   G+            +     +  
Sbjct: 690 FIDITEQRQNEKDKLKAKLLLDKTENELSDAQALAKIGSWLVRPSGMKMEWSKEMYNIWG 749

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
           +     +     +   +    +        +    +         R   I         +
Sbjct: 750 FDYGKKLPDYESVVERVHPDDM--ELLKNAIDKAITKGEPYNIEYR---ICIPNRPQKTI 804

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM------EIEVMQLCSIL 458
             I      +  + +   G   +  + +    ++        E  +L S  
Sbjct: 805 RAICQPVMGEDGKVINLAGTNQDITEQKKLSGELISAKEKAEESDRLKSAF 855


>gi|172057086|ref|YP_001813546.1| integral membrane sensor signal transduction histidine kinase
           [Exiguobacterium sibiricum 255-15]
 gi|171989607|gb|ACB60529.1| integral membrane sensor signal transduction histidine kinase
           [Exiguobacterium sibiricum 255-15]
          Length = 679

 Score =  296 bits (759), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 95/374 (25%), Positives = 172/374 (45%), Gaps = 30/374 (8%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF--------GYPVEDILRKP 496
            +ME E  +   +L +  + I  I  +   +  N+A+  +F           +  +  +P
Sbjct: 317 EQMEYERKETAQLLNSVREAILYIKHDEKTILGNQALFDIFESLQIEEDNDSMTFLEVRP 376

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-CYS 555
            T+F + +       Y  E+LS  + + +   +L   + E  + +      L   +    
Sbjct: 377 ETMFEQVDQKEAFEAYFEEVLSGQIPEGMF--SLSIDQGEYFIQVYAEEIMLSEQAKGTI 434

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
           L   D++                 +    KS+ ++ VSHE+RTPL++I GF+E++  ++ 
Sbjct: 435 LVFRDVT--------------AETEVDRMKSELVSTVSHELRTPLSSIYGFTELMLKRKL 480

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
            P    R   Y   I      + D+V+D L++ ++ESGK +   E   L + V E     
Sbjct: 481 DP---ERNKRYLQTIHDESKRLTDLVSDFLNVQRMESGKHSYDKEVFDLIDTVREQTRFY 537

Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
           Q    + R+ +     +    I AD  S+KQ+  N+L NAI ++P GG ++IS TH  N 
Sbjct: 538 QASTEQHRLQLDVDENHEFL-IHADKNSMKQLLGNLLHNAIKYSPDGGDVVISLTHHHN- 595

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
           ++ L VRD G+G+ +  +      F ++ NS   +  GTGLGL + K +V A+ G   + 
Sbjct: 596 QIELSVRDFGLGIPSSAMPHLFSKFYRVDNSDSRKIGGTGLGLSICKEIVRAHDGNIDVE 655

Query: 796 STPAKGTLIEIIFP 809
           S   +GT+ +++ P
Sbjct: 656 SILGEGTVFKVLLP 669


>gi|170767706|ref|ZP_02902159.1| phosphate regulon sensor protein PhoR [Escherichia albertii
           TW07627]
 gi|170123194|gb|EDS92125.1| phosphate regulon sensor protein PhoR [Escherichia albertii
           TW07627]
          Length = 431

 Score =  296 bits (759), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 73/427 (17%), Positives = 149/427 (34%), Gaps = 37/427 (8%)

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             +L       I     L  + W     L +         +        G+    +  + 
Sbjct: 33  WFLLASVTGLLIWHFWNLLRLSW----WLWVDRSMTPPPGRGSWEPLLYGLHQMQLRNKK 88

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            +R++   + +  S  E+  D + +   EG I   N    ++ G    +   +     L 
Sbjct: 89  RRRELGNLIKRFRSGAESLPDAVVLTTEEGGIFWCNGLAQQILGLRWPEDNGQNILNLLR 148

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
               +               +   +         + L +R++           +   D++
Sbjct: 149 YPEFTQYL----------KTRDFSRPLNLVLNTGRHLEIRVMPYTHKQ---LLMVARDVT 195

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  Q +                + +F A VSHE+RTPLT + G+ E++  Q        +
Sbjct: 196 QMHQLEG--------------ARRNFFANVSHELRTPLTVLQGYLEMMHEQPLEGAVREK 241

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                + +      +  +V  LL +SKIE+    L  E V +   +       Q  +  K
Sbjct: 242 A---LHTMREQTQRMEGLVKQLLTLSKIEAAPTQLLNEKVDVPMMLRVVEREAQTLSQHK 298

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           +        NN+ ++  +   ++    N++ NA++ TP G  I +      +      V 
Sbjct: 299 Q-TFTFEIDNNL-KVSGNEDQLRSAISNLVYNAVNHTPEGTHITVCWQRVPHG-AEFSVE 355

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G G+    + +  + F ++  ++  +  G+GLGL + K  V+ +  +  I ST  KG 
Sbjct: 356 DNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHAVNHHESRLNIESTLGKGA 415

Query: 803 LIEIIFP 809
               + P
Sbjct: 416 RFSFVLP 422


>gi|262164909|ref|ZP_06032647.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio mimicus VM223]
 gi|262027289|gb|EEY45956.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio mimicus VM223]
          Length = 857

 Score =  296 bits (759), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 79/371 (21%), Positives = 159/371 (42%), Gaps = 21/371 (5%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           R++  +  Q   +         + N  G ++  N +    F              FL + 
Sbjct: 350 RRLANKEKQFEDLFNFALSPTMLWNTAGRLIRMNPSAQIQFLREDAQ------NHFLFEI 403

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT-MHDISE 563
               +   +T          +         + ++    +    +       +T   D++ 
Sbjct: 404 LERQLLPMITYAAQGKNPSEVTTEV-----DGRVYRWNLSPIMVEGQIISIITQGQDVTS 458

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + + +   A++ AE+ +  +++FLA++SHE+RTPL  ++G S+++K            
Sbjct: 459 IAEAEKQSQVARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRTPL----TDEQ 514

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            E+   +  SG  +L ++ND+LD S++E GK  +      L E V     + +   N+K 
Sbjct: 515 REHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKSEFRLKELVCAIDRIYRPLCNDKG 574

Query: 684 ILIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EVIL 739
           I +       +   + +D   + QI  N+L+NAI FT  G  I ++      +   ++++
Sbjct: 575 IALVVESNITSATLVRSDQIRINQILFNLLNNAIKFTHQGS-IRVALELIEGDPLAQLVI 633

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
           +V DTG+G+   +L    +PF Q  ++      G+GLGL +  ++V+   G+ ++ S   
Sbjct: 634 QVMDTGIGIREEDLTVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHVSSEYG 693

Query: 800 KGTLIEIIFPL 810
            GT  EI  P+
Sbjct: 694 HGTRFEIQLPI 704


>gi|239616849|ref|YP_002940171.1| Hpt sensor hybrid histidine kinase [Kosmotoga olearia TBF 19.5.1]
 gi|239505680|gb|ACR79167.1| Hpt sensor hybrid histidine kinase [Kosmotoga olearia TBF 19.5.1]
          Length = 958

 Score =  296 bits (759), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 87/247 (35%), Positives = 134/247 (54%), Gaps = 7/247 (2%)

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            ++    L  A   A + S  KS+FLA +SHE+RTP+ AI+GF+E++ ++      N   
Sbjct: 317 LRKSNELLRKATAEARQASRMKSEFLANMSHEMRTPMNAILGFTELLLSEE----TNEEK 372

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            ++   I RSG  +L ++ND+LD+SKIESGKM ++ E  S    + E +      A  K 
Sbjct: 373 RKHLVTIYRSGEHLLSLINDVLDLSKIESGKMQIYEEIYSPRNLLKELVETYLPMAYSKG 432

Query: 684 ILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           + +  S  NN+P  ++ D   +KQI  N++SN I FT  G  I I   +    ++   V 
Sbjct: 433 LHLAYSLDNNVPEYVVGDAFRIKQILTNLVSNGIKFTSQG-YITIQANYKE-GKITYIVN 490

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG+G+   +L+K  +PF Q+  +   +  G GLGL + K +VD   GK YI S   KGT
Sbjct: 491 DTGIGIPEEKLDKIFEPFTQLDRTMSRKYGGMGLGLAITKKLVDLMNGKLYIESHIGKGT 550

Query: 803 LIEIIFP 809
            + +  P
Sbjct: 551 KVVVSLP 557


>gi|260777693|ref|ZP_05886586.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260605706|gb|EEX31991.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 856

 Score =  296 bits (759), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 89/374 (23%), Positives = 165/374 (44%), Gaps = 19/374 (5%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           +++  +  Q   +   +   I + + EG ++ +N A  + F   + D   +     L + 
Sbjct: 349 QRLSEQEKQFADLFNFSLSPITLWDVEGKLIRSNPAAERSFRVEMGD--EQNDYQLLVEK 406

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564
               +           +   +        +E+        I      +       D++ +
Sbjct: 407 LGPHIRMCAKGATLTGINIAI--------REKTYRWNLSPIFVDKGINNIMAQGQDVTSF 458

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
              + +   A+K AE+ +  ++DFLA++SHE+RTPL  I+G S+++K    G + N   I
Sbjct: 459 VDAEIQSQAARKEAEESARVRADFLAKMSHELRTPLNGILGVSQLLK----GKISNTDDI 514

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           E+ + +  SG  +L ++ND+LD SKIE GK ++      L E +S    +     +EK I
Sbjct: 515 EHLDVLCNSGEHLLAVLNDILDFSKIEQGKFHIQSADFRLVELISAVEKIYTPLCDEKGI 574

Query: 685 LIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST---THTSNEEVILR 740
                   +N     +D   + QI  N++SNAI FT  G ++ +S      +    + + 
Sbjct: 575 GFVVETNVSNNTFAHSDQVRLNQILFNLVSNAIKFTHEG-EVTVSLFCDGESPESRLNIS 633

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           VRDTG+G+    +    +PF Q   +      G+GLGL +  ++V+   G+  I S+   
Sbjct: 634 VRDTGIGIERERISHIFEPFVQAEATTTREYGGSGLGLAIVHSLVEMLNGQIEIESSIGY 693

Query: 801 GTLIEIIFPLYDTS 814
           GT   +  P+  T 
Sbjct: 694 GTKFSLSVPIELTE 707


>gi|254421413|ref|ZP_05035131.1| PAS fold family [Synechococcus sp. PCC 7335]
 gi|196188902|gb|EDX83866.1| PAS fold family [Synechococcus sp. PCC 7335]
          Length = 396

 Score =  296 bits (759), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 80/398 (20%), Positives = 158/398 (39%), Gaps = 36/398 (9%)

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            + ++     Q   IL +  +G+  ++ EG +   N A + +  + +ED++ +     L 
Sbjct: 6   EQTELVTLRRQYQLILNSVGEGVYGLDLEGNVTFVNPAAAAMIDWDIEDLIGQSMHRVLH 65

Query: 503 QNTPSVMNHYLT-----EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----C 553
            +     +++         L       +        K+     +  I   +         
Sbjct: 66  HSYLDGTHYHRESCPIYAALHDGSTHRVTNEVFWR-KDGTNFPVEYISTPMRDEQKQVIG 124

Query: 554 YSLTMHDISEWKQEK------------------NKLSHAKKIAEKESSHKSDFLARVSHE 595
             +T  DI++ K  +                   +L  A     + S+ KS F++ V HE
Sbjct: 125 AVVTFRDITQRKWAETVLQQTNEDLEEKVRSRAAELYTANAHLRELSALKSRFVSMVCHE 184

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
            R PL  I      +  +    L   +  +Y   I  +   +  +++D+L + K+E+ ++
Sbjct: 185 FRNPLNNIALSVSSL-GRYDEKLTQTQKQKYLLGIATNVERMTHMIDDILVLGKLEAKRL 243

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715
           +L   P+ L +   + +  +Q   N +R+     F + +  I  D   ++ I  NILSNA
Sbjct: 244 SLSPRPIDLADFCHQLLLEIQP--NNRRLEFTGRFRSLVAEI--DQTLLRSILTNILSNA 299

Query: 716 IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           I ++ +G  + +S  +    + I +++D G+G+   +     +PF +  N       GTG
Sbjct: 300 IRYSSAGSLVQLSL-YQRKHQAIFQIKDQGLGILPEDYPYLFEPFHRGRN--VSNIPGTG 356

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
           LGL + K  V    G   + S P  GT  +I  PL   
Sbjct: 357 LGLSIVKQFVALQQGDIKVESQPGIGTTFKIRLPLSPQ 394



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/187 (11%), Positives = 51/187 (27%), Gaps = 11/187 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN------HIGDLLKR 139
            + +D  G +  ++      I      +IG  +  V    ++D  +       I   L  
Sbjct: 28  VYGLDLEGNVTFVNPAAAAMIDWDIEDLIGQSMHRVLHHSYLDGTHYHRESCPIYAALHD 87

Query: 140 QNTWY-GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
            +T        W  +GTN   P++  + P+    ++  G                  + +
Sbjct: 88  GSTHRVTNEVFWRKDGTNF--PVEYISTPMRDEQKQVIGA--VVTFRDITQRKWAETVLQ 143

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
           + ++        +              S         + ++  +     A     L    
Sbjct: 144 QTNEDLEEKVRSRAAELYTANAHLRELSALKSRFVSMVCHEFRNPLNNIALSVSSLGRYD 203

Query: 259 YPLLTSE 265
             L  ++
Sbjct: 204 EKLTQTQ 210


>gi|168022997|ref|XP_001764025.1| cytokinin receptor AtCKI2-like protein [Physcomitrella patens
           subsp. patens]
 gi|162684764|gb|EDQ71164.1| cytokinin receptor AtCKI2-like protein [Physcomitrella patens
           subsp. patens]
          Length = 725

 Score =  296 bits (759), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 79/400 (19%), Positives = 155/400 (38%), Gaps = 57/400 (14%)

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
           L  +L+     I+  ++E      N  V  + G    +++           T  +    L
Sbjct: 13  LQMVLKDVPVIISHCDKELTYTYVNACVQGMKGKKDTELVGLVPGAL---ETMRIKKEVL 69

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISE-------- 563
              L+     T+     G     + L +     +              D++E        
Sbjct: 70  ELGLAQGKELTISMDGFGK----RWLVVACEPLRNKAGEILGVITACMDVTEQALAREKL 125

Query: 564 ---------WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                     +  + +L  A ++A++    K+ FLA +SHEIRTPL  + G ++V+    
Sbjct: 126 AQMREEMAVREATEKELRRAIRLADEAMEAKNRFLAVMSHEIRTPLNGVFGMAQVLATTP 185

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                +P   E  + +  S +++L I++D+LD+SK+E+G M L    ++  + V   +  
Sbjct: 186 L----DPEQRELVSAMVFSADVLLAIISDILDLSKVEAGTMKLEERELNPRDIVKHVVRT 241

Query: 675 VQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIIST---- 729
               + ++ I I+   A+++P  +  D   +KQ+  N++ NA+ FT  G  + +      
Sbjct: 242 AIAASKDRGITIQADIADDVPSMVYGDPLRIKQVITNLVFNAVKFTRKG-HVKVRLHIAK 300

Query: 730 ---------------------THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
                                  + +  +   + DTG+G+    L    + F  + +S  
Sbjct: 301 FPIDERETDVNLDVSDTKTSDQVSRDFWLKFEIEDTGIGIPKEALPTLFEKFTLVHSSTT 360

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            +  GTGLGL + K +V+   G   + S   KG+      
Sbjct: 361 RKYGGTGLGLAICKQLVELMDGHISVISKVGKGSTFTFTI 400



 Score = 47.3 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 29/251 (11%), Positives = 71/251 (28%), Gaps = 18/251 (7%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D       ++  +    G    +++G           ++      ++L+      GK   
Sbjct: 28  DKELTYTYVNACVQGMKGKKDTELVG------LVPGALETMRIKKEVLELGLA-QGKELT 80

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG-KRLDKKFSHLH 208
             ++G      + +A  P+ ++  E  G     I     V     A       ++   + 
Sbjct: 81  ISMDGFGKR-WLVVACEPLRNKAGEILGV----ITACMDVTEQALAREKLAQMREEMAVR 135

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV-----SSLTEYYAHKDDVLKTEKYPLLT 263
           E  +          D   +        M +++                  L  E+  L++
Sbjct: 136 EATEKELRRAIRLADEAMEAKNRFLAVMSHEIRTPLNGVFGMAQVLATTPLDPEQRELVS 195

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
           +   S        +  L+    +     L+       + + H    +++A  D G  +  
Sbjct: 196 AMVFSADVLLAIISDILDLSKVEAGTMKLEERELNPRDIVKHVVRTAIAASKDRGITIQA 255

Query: 324 ETVDKCPIPFF 334
           +  D  P   +
Sbjct: 256 DIADDVPSMVY 266


>gi|163814849|ref|ZP_02206237.1| hypothetical protein COPEUT_00999 [Coprococcus eutactus ATCC 27759]
 gi|158449788|gb|EDP26783.1| hypothetical protein COPEUT_00999 [Coprococcus eutactus ATCC 27759]
          Length = 599

 Score =  296 bits (759), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 82/342 (23%), Positives = 152/342 (44%), Gaps = 12/342 (3%)

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
           I+  N    + F   V D   K      +      +N + T   +   ++        + 
Sbjct: 113 IVDANEIFGEYFKLDVSDYKDK-ILKESKIEVLQDINAWFTAYNNSGTKEGDLMDVEITM 171

Query: 534 KEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
             E L  +   +     +   ++ + D+++ K+ + KLS A   A      +++FLA +S
Sbjct: 172 --ESLQKVFNTVMYKSEADYINMVVIDVTKQKETEEKLSKAIVDANAAYKTQAEFLANMS 229

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HEIRTP+  I+G    ++           Y +         + +L ++ND+LDISK+E+G
Sbjct: 230 HEIRTPINGILGM---LQLTLMAEDLQADYRDNLITAKNCADTLLRLINDILDISKLEAG 286

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNIL 712
           K  +  E   +  A+ + ++     A  K + +  SF +NIP+ +  D + ++Q+   +L
Sbjct: 287 KYKIKEETFDIRTAIEDTVAAQVPIATNKGLQLDCSFGSNIPKLVRGDGQRIQQVLNCLL 346

Query: 713 SNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
           SNAI FT  G  + +      + E    + + V DTG+G++   + K    F Q+  S  
Sbjct: 347 SNAIKFTSEGS-VRVKIASMDDGENKIKIRMAVADTGIGISEANMSKLFIRFSQVDASDT 405

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            +  G+GLGL + K +V+   G   + S    G+   +  PL
Sbjct: 406 RKYGGSGLGLVITKQIVELMGGNITVQSKEDIGSTFIVEIPL 447


>gi|94970384|ref|YP_592432.1| multi-sensor signal transduction histidine kinase [Candidatus
           Koribacter versatilis Ellin345]
 gi|94552434|gb|ABF42358.1| multi-sensor signal transduction histidine kinase [Candidatus
           Koribacter versatilis Ellin345]
          Length = 970

 Score =  296 bits (759), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 95/522 (18%), Positives = 192/522 (36%), Gaps = 46/522 (8%)

Query: 319 ENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
           + +    VD+      V     +                  I    GL       +  D 
Sbjct: 466 DKMLASIVDRLSRTLLV---DRIAVFVHDEQSRWVLAKSCGISQTTGLDMSFMNEERPDM 522

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQW-----------NRENSLAMTFIPFEKAN----- 422
            A   +    + +          TI+                   +      + +     
Sbjct: 523 AAAGHLFFDNTSQAVRENPGARETIRRLDLNYYLPCTVMGRTIAMVGLGKTTEGDFLSSE 582

Query: 423 ---QFPENMPQNGIEPEDVDTRINKRKMEIEVMQL----CSILEATSDGIAIINREGIIL 475
                       GI  ++     +  +   E  +L     +I+E+ S G+  ++ E  I 
Sbjct: 583 DVELLETLAGYIGIALQNARLYQSLAEKITEYERLKEFNENIVESVSVGVLAVDLEDKIE 642

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
           S N  +  ++  P  + L K  +     N    +  +        +    +        +
Sbjct: 643 SWNAQMEVMYALPRAEALGKRLSDVFPLNF---VEEFYRVRQVPGINNLYKFRMGTPAGD 699

Query: 536 EKLLSLRIII--KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
            ++ ++ I     +        + + D+++  + +++L+ A+K+     S      A V+
Sbjct: 700 TRICNIAIAPLVTRDFNVIGRIIILDDMTDRVELESQLAQAEKL-----SSIGLLAAGVA 754

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HE+ TPL  I  +++++  Q  G   + R       I        +IVN+LL+ S+  S 
Sbjct: 755 HEVNTPLAVISSYAQMLSKQLQG---DERRSALLEKITTQTFRASEIVNNLLNFSRTGSS 811

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713
                F  V +++ VS+ ++L++      R+ +    A  +P+I  +   ++Q+ LN+  
Sbjct: 812 ----EFAEVDINKVVSDTLALLEHQLKTSRVKVENHLAPTLPKIYGNTGKLQQVFLNLFL 867

Query: 714 NAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS-QQIRGE 772
           NA    PSGG + I+T   +   V + V DTG G+    +++   PF     S +Q    
Sbjct: 868 NAKDAMPSGGTLSITT--RNGRAVEVEVCDTGSGIAPEHIQRIYDPFFTTKKSPRQGHSG 925

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           GTGLGL +   ++  + GK  + S P +GT   + FP+   +
Sbjct: 926 GTGLGLAVTYGIIQEHAGKIRVDSRPGEGTQFTMEFPMVRKA 967


>gi|156744256|ref|YP_001434385.1| multi-sensor signal transduction histidine kinase [Roseiflexus
           castenholzii DSM 13941]
 gi|156235584|gb|ABU60367.1| multi-sensor signal transduction histidine kinase [Roseiflexus
           castenholzii DSM 13941]
          Length = 556

 Score =  296 bits (759), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 93/462 (20%), Positives = 182/462 (39%), Gaps = 28/462 (6%)

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM-TFIPFE 419
           EI      LL  P       +  +    +             + +       +  F    
Sbjct: 70  EIWPVFDDLLATPLSDQQALVHRLREAGASIGLPLRHVSALPLMFRGATVGVIYVFRAAL 129

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKM----EIEVMQLCSILEATSDGIAIINREGIIL 475
                 E         +     ++  ++      E   L +++E ++DG+ I++    I 
Sbjct: 130 NVEFTAEEHQLLTAFADQAAIAVSNARLFQSVLREKQHLDALIENSADGVMILDERWRIA 189

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR----QTLEKITLG 531
           + NRA+  L G+  E+ + +P    L  +TP   N  LT+              E     
Sbjct: 190 TFNRAMELLTGWSREEAIGRPCAEVLAIHTPQGANLCLTDCPLQRQPFEPNPVAEGWITT 249

Query: 532 STKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
                  +  R   ++ P  +       + D++E K               E+  ++ F+
Sbjct: 250 RDGRRLYIQSRYAAQRSPQGAFLGAIANVRDVTEQK--------------IEAEMQNTFI 295

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
           + +SHE+RTP++ I G++E +  Q           E    I    + +   +N LL+ S+
Sbjct: 296 SVISHELRTPVSIIKGYAETLARQD-AAWDAATLREGLAVIIEEADRLAQQINTLLEASR 354

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709
           +++  M L     S+   V   +      A + R   +    ++ P + AD    + +  
Sbjct: 355 LQTDSMRLELSDWSVRPLVERVVERFAPQAGD-RFTFQIDIPDDFPPVHADYERTRTVVE 413

Query: 710 NILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
           N++SNAI ++P+GG I I+   +  +  I+ V D G+G+   E +K  + F ++ N  + 
Sbjct: 414 NLISNAIKYSPNGGLIRITARVS-GDFAIISVSDQGIGIPLEEQKKLFRRFYRVDNRLRR 472

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
             +G GLGL L++ +V+A  G+ ++ S P +G+      PL 
Sbjct: 473 ETQGAGLGLFLSRVIVEAQGGRIWVDSRPGRGSRFSFTVPLA 514



 Score = 40.4 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 29/244 (11%), Positives = 69/244 (28%), Gaps = 9/244 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTWYGKT 147
           +D    +   +  +    G    + IG    +V  I      N  + D   ++  +    
Sbjct: 182 LDERWRIATFNRAMELLTGWSREEAIGRPCAEVLAIHTPQGANLCLTDCPLQRQPFEPNP 241

Query: 148 TL--WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
               W        + I        S    F G     I +V  V         +      
Sbjct: 242 VAEGWITTRDGRRLYIQSRYAAQRSPQGAFLGA----IANVRDVTEQKIEAEMQNTFISV 297

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
             HE++   S ++     +  Q +      ++  ++ + E        + T         
Sbjct: 298 ISHELRTPVSIIKGYAETLARQDAAWDAATLREGLAVIIEEADRLAQQINTLLEASRLQT 357

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
           +S   E  D+    L +   +++     +    +F+     + P + A ++    +    
Sbjct: 358 DSMRLELSDWSVRPLVERVVERFAPQAGDR--FTFQIDIPDDFPPVHADYERTRTVVENL 415

Query: 326 VDKC 329
           +   
Sbjct: 416 ISNA 419


>gi|331010550|gb|EGH90606.1| PAS protein [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 638

 Score =  296 bits (759), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 97/374 (25%), Positives = 177/374 (47%), Gaps = 11/374 (2%)

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            +R +  +   + +++E T   I + +REG++   N +  ++F    EDI+ K  T  + 
Sbjct: 3   AERALGDQFEFMRALVEGTPHPIYVRDREGMLRMCNDSYLRVFSAQREDIIGKSATEGVL 62

Query: 503 QNTPSV--MNHYLTEILSLDLRQTLEKITLGSTKEEKLL-SLRIIIKKLPFSSCYSLTMH 559
            N             +++ +    L++      ++  +   +      L           
Sbjct: 63  GNAFEAREYAADYQRVMASNTALILDRPLRIGDRQMTIYHWILPFRDSLGEVQGIIGGWI 122

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           DISE +Q    L  AK+ A+  S  KS FLA +SHEIRTP+ A+IG  E+   +      
Sbjct: 123 DISERRQLIEDLQAAKEQADAASRAKSTFLATMSHEIRTPMNAVIGMLELALKRADHGEL 182

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
           +            S N +LD++ D+LDI++IESG+++L+ E  +L   V   + +    A
Sbjct: 183 D---RSAIEVAYSSANDLLDLIGDILDIARIESGRLSLNPERANLRRLVESVLRVFDGLA 239

Query: 680 NEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNE-- 735
            +K + +     + I   +L D    KQI  N++SNAI FTP G  +I++    + +   
Sbjct: 240 RQKDLDLVLELDSRINADVLIDPLRFKQILSNLVSNAIKFTPMGRIKIVLQAAESPDPQL 299

Query: 736 -EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
             + + V+D+G+G++  + ++  +PF Q  N+ Q+   G GLGL + +++     G   +
Sbjct: 300 LHLHITVQDSGIGISAEDQQRLFEPFAQADNTGQMARTGAGLGLVICRSLCMMMGGNLSL 359

Query: 795 FSTPAKGTLIEIIF 808
            S P +GT I +  
Sbjct: 360 DSVPGQGTRISMNL 373



 Score = 39.6 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 23/239 (9%), Positives = 50/239 (20%), Gaps = 15/239 (6%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCD--VSDILHIDPNNHIGDLLKRQNTWYGKT 147
           D  G L+  ++   +        +IG    +  + +             +   NT     
Sbjct: 29  DREGMLRMCNDSYLRVFSAQREDIIGKSATEGVLGNAFEAREYAADYQRVMASNTALILD 88

Query: 148 TLWPIEGTN--LYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
               I      +Y  I    LP      E  G  G  I              +   ++  
Sbjct: 89  RPLRIGDRQMTIYHWI----LPFRDSLGEVQGIIGGWI--DISERRQLIEDLQAAKEQAD 142

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
                K    +    +                 +++     +   D       Y      
Sbjct: 143 AASRAKSTFLATMSHEIRTPMNAVIGML-----ELALKRADHGELDRSAIEVAYSSANDL 197

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
              + +  D   I   + +       L+   +                   E ++    
Sbjct: 198 LDLIGDILDIARIESGRLSLNPERANLRRLVESVLRVFDGLARQKDLDLVLELDSRINA 256


>gi|126661522|ref|ZP_01732570.1| hybrid sensory kinase [Cyanothece sp. CCY0110]
 gi|126617188|gb|EAZ88009.1| hybrid sensory kinase [Cyanothece sp. CCY0110]
          Length = 611

 Score =  296 bits (759), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 93/377 (24%), Positives = 168/377 (44%), Gaps = 53/377 (14%)

Query: 476 STNRAVSKLFGYPVE-DILRKPFTVFLE------QNTPSVMNHYLTEILSLDLRQTLEKI 528
             N+   KL G  ++ +   +                       + + L  ++    +  
Sbjct: 4   YANQQAKKLLGQDIDPETNPEDIAAVYHNYIAGTDELYPNEKLPIIKALQGEVTSVDDLE 63

Query: 529 TLGSTKEEKLLSLRIIIKKLPFSSCYS----LTMHDISEWKQEK---------------- 568
                + ++++ +      +   +       +   DI+E K+ +                
Sbjct: 64  I---HQSDRIILIESRGTPIYNEAGEVEYALVAFQDITEHKRAEKILADYYQELEQEVKR 120

Query: 569 --NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
              +L  AK+ AE  +  KS F+A +SHE+RTPL AI+GFS+++K        +    E 
Sbjct: 121 QTEELEIAKEKAEVANEAKSAFIANMSHELRTPLNAILGFSQIMKR---SSTLSQEEKEN 177

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
            N I RSG+ +L ++N++LD++KIE+GKM L+     L   + E   L+ L AN K + +
Sbjct: 178 INIIGRSGDYLLTLINNILDLAKIEAGKMTLNPCDFDLYSCLQEVEDLLHLKANNKGLKL 237

Query: 687 RTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-III---------------ST 729
             +   ++P+ I  D   ++Q+ +N+++NAI FT  GG  + +               S 
Sbjct: 238 EINHDQDVPQYINTDETKLRQVLINLINNAIKFTSEGGVFVQVRNQPSDIKDSNLNNDSK 297

Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
           + T+N+ + + V+DTGVG+   EL+K  + F Q   S +   EGTGLGL +++  V    
Sbjct: 298 SLTNNDYINITVQDTGVGIAAGELDKLFEAFAQTE-SGKKSSEGTGLGLAISRKFVQLMG 356

Query: 790 GKFYIFSTPAKGTLIEI 806
           G   + +    GT    
Sbjct: 357 GDITVTTEVESGTTFSF 373


>gi|307825998|ref|ZP_07656212.1| PAS/PAC sensor hybrid histidine kinase [Methylobacter tundripaludum
           SV96]
 gi|307732973|gb|EFO03836.1| PAS/PAC sensor hybrid histidine kinase [Methylobacter tundripaludum
           SV96]
          Length = 619

 Score =  296 bits (759), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 96/497 (19%), Positives = 182/497 (36%), Gaps = 55/497 (11%)

Query: 322 TPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
               +D       V    G + YAN +  +L        +  +  +   L  P   D N+
Sbjct: 8   FDLILDTITDGVLVVDSQGVVLYANQAAEIL--------LARSPIIGQSLAIPVNPDKNS 59

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
            + + L R +   + A  R   ++W+ +    +                           
Sbjct: 60  YQDINLIRPNG-LVWAEMRSSPLEWDGQPGYVIALRDIT--------------------- 97

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF--T 498
              ++ ME+E  +  S+ + + + I + + + +    N A  +L G    +   +     
Sbjct: 98  --ERKHMELERQKFVSLADNSMEFIGMFDMKFLPFYINEAGMRLIGLDSLEQCIRTPVQE 155

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST-KEEKLLSLRIIIKKLPFSSC---- 553
            F  ++   +++ +   ++        +        K    + +   +  +  S+     
Sbjct: 156 FFFPEDQRFILDEFFPRVVREGHA---DVEIRFRHFKSGAAIWMLYNVFFIKDSAGEPVG 212

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
            +    DIS  KQ +  L        +    K +FLA ++HE+R PL  I   + ++   
Sbjct: 213 IATVSRDISARKQAEAAL-------HEADRRKDEFLAMLAHELRNPLAPISNAAHIL--- 262

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
               L +PR       I R    +  +V+DLLDIS+I  GK++L  E + L E +   + 
Sbjct: 263 DMLKLEDPRLSWAKEIIKRQVMHLTHLVDDLLDISRIARGKISLKKERLDLVEVIKSVLD 322

Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
             +     K+  +          +  D   + Q+ LN+L NA  ++    QI +      
Sbjct: 323 TARGPILAKQQHLDVHLPEQPILLEGDSVRLSQVLLNLLDNAGKYSLENAQIEVDVQLY- 381

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
             EV ++VRD G G++   L      F Q   +      G G+GL L K +V+ + GK  
Sbjct: 382 GTEVEIQVRDNGTGISAGLLPTIFDLFQQGARTLDRSQGGLGIGLTLVKRLVELHGGKVT 441

Query: 794 IFS-TPAKGTLIEIIFP 809
             S     G+   I  P
Sbjct: 442 ASSPGAGLGSTFSIRLP 458



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 49/138 (35%), Gaps = 23/138 (16%)

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
           +   IL+  +DG+ +++ +G++L  N+A   L       I+ +   + +  +  S  +  
Sbjct: 7   KFDLILDTITDGVLVVDSQGVVLYANQAAEILLARSP--IIGQSLAIPVNPDKNSYQD-- 62

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNK 570
                            +   +   L+   +    L +     Y + + DI+E K  + +
Sbjct: 63  -----------------INLIRPNGLVWAEMRSSPLEWDGQPGYVIALRDITERKHMELE 105

Query: 571 LSHAKKIAEKESSHKSDF 588
                 +A+        F
Sbjct: 106 RQKFVSLADNSMEFIGMF 123


>gi|42525106|ref|NP_970486.1| hypothetical protein Bd3779 [Bdellovibrio bacteriovorus HD100]
 gi|39577317|emb|CAE81140.1| hypothetical protein Bd3779 [Bdellovibrio bacteriovorus HD100]
          Length = 449

 Score =  296 bits (759), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 77/246 (31%), Positives = 126/246 (51%), Gaps = 7/246 (2%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  A++ A + SS KS FL+ +SHEIRTPL +IIGFS+++++ R     +    +Y   
Sbjct: 209 QLVQAREEALQLSSIKSTFLSNMSHEIRTPLNSIIGFSDILRDTRL----DKDQTDYVQT 264

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I R  + +L I+ND+LDISKIE+G + +      + E  ++   + +    EK + +   
Sbjct: 265 IQRCSDSLLHIINDVLDISKIENGLLQIDRHKFDVKELHTDIFKIFEAKCQEKNLQLEVD 324

Query: 690 FANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN-EEVILRVRDTGVG 747
              +IP   L D   ++QI +N++ NA+ FT  G ++ IS          + +V DTG G
Sbjct: 325 IDESIPAFALGDSHRLRQILMNLVGNAVKFTDKG-RVCISLQRQPGSGHYVWKVSDTGRG 383

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           +    + K  + F Q   S      G+GLGL + K +V+   G   + S   +GT     
Sbjct: 384 IRLENMSKLFRSFSQEDVSISRTYGGSGLGLMICKNLVEMMGGDIKVESKLGEGTTFHFT 443

Query: 808 FPLYDT 813
            PL + 
Sbjct: 444 LPLEEA 449


>gi|308535171|ref|YP_002137349.2| sensor histidine kinase [Geobacter bemidjiensis Bem]
 gi|308052516|gb|ACH37553.2| LOW QUALITY PROTEIN: sensor histidine kinase [Geobacter
           bemidjiensis Bem]
          Length = 554

 Score =  296 bits (759), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 82/271 (30%), Positives = 134/271 (49%), Gaps = 19/271 (7%)

Query: 559 HDISEWKQEK-------NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
            +I E KQ +        +L+ A++ +E  +  K++FLA +SHE+RTPL   +G   ++ 
Sbjct: 274 KEIEERKQYEKALLQTGERLAVAQRQSEAANRAKTEFLANMSHEMRTPLAGALGMIRLVL 333

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
           +   G        +      RS + +L I+ DLLD S++E+G M    +P SL E V  A
Sbjct: 334 DMNIGA----EERQLLEMAKRSADSLLRIIADLLDFSRLEAGVMTFEDKPFSLKEVVRSA 389

Query: 672 ISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIIS-- 728
           + +V L A EK + +  S    +P ++  D   ++Q+ +N+L NA+ FT  GG I +S  
Sbjct: 390 VEVVSLVAEEKELHLSWSVDGAVPDQLSGDEGRLRQVLVNLLGNAVKFTERGG-IEVSIK 448

Query: 729 ----TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
                       V   VRDTGVG+   +L++    F Q+ +S   R  GTGLGL L + +
Sbjct: 449 TLEPLEAQGERYVEFYVRDTGVGIPADQLQRIFDRFTQVDSSLTRRHGGTGLGLALTRQI 508

Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
           V+   G  +  S    G+      P+  ++ 
Sbjct: 509 VEKMGGSIWAESVIGSGSTFHFTVPMVPSAA 539


>gi|15614483|ref|NP_242786.1| two-component sensor histidine kinase [Bacillus halodurans C-125]
 gi|10174538|dbj|BAB05639.1| two-component sensor histidine kinase [Bacillus halodurans C-125]
          Length = 548

 Score =  296 bits (759), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 85/421 (20%), Positives = 168/421 (39%), Gaps = 34/421 (8%)

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI-- 457
             T+ W  E       I     N  P +        + ++    + K+ ++  +L S+  
Sbjct: 146 FSTVNWYNEPQKGTIGIMTSVENASPLHSGLLSSVVDGIER---EFKLRVQNRKLESLNQ 202

Query: 458 --LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
             +  + +GI I ++EG I   N +  +LF    ED+L K               +    
Sbjct: 203 IMVTTSRNGIVITDKEGKITECNHSAEELFALDREDMLGKKIR-----EVQPFGEYVDLA 257

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSH 573
           +        ++   +    + K +++ +                  DI++  + + ++  
Sbjct: 258 VRKKQRIDNMDLNFINIENKMKYITMDVSPIYGKNQEFIGAYGQFRDITDRVELEQQVIQ 317

Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
            +K      S      A ++HEIR PLT IIGF  ++KN+      + +  +Y   +   
Sbjct: 318 NEKF-----SAIGRLSAGLAHEIRNPLTPIIGFVNLLKNESH---LDEKAKQYLRIMSDE 369

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-N 692
              V  +VND + +SK E        +  SL   V + I  ++   +   + +  + + +
Sbjct: 370 LERVRKLVNDFVIVSKPE----PPELKKTSLHTLVEQVIRFMESQGSLHNVQMEVNHSID 425

Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-SNEEVILRVRDTGVGMTNY 751
               +L D   +KQ+ +N+L+NA+     GG I + T     N    ++V+D G GM+  
Sbjct: 426 ETDELLVDASQMKQVLINLLTNAMDAMERGGTIRVETGKDLGNGMFSIKVQDEGCGMSED 485

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
           +L +   PF    +       G GLGL +   ++  + G   + S   +G+  EI+ P+ 
Sbjct: 486 QLNQLFNPFFTTKDD------GLGLGLSICYRIIKNHGGTINVVSQQGEGSTFEILLPVK 539

Query: 812 D 812
           +
Sbjct: 540 E 540



 Score = 45.4 bits (106), Expect = 0.041,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 46/127 (36%), Gaps = 9/127 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            D  G + E +    +        M+G ++ +V              + K+Q        
Sbjct: 215 TDKEGKITECNHSAEELFALDREDMLGKKIREVQPF----GEYVDLAVRKKQRIDNMDLN 270

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
              IE    Y+ +D++  PIY +N+EF G   +G         +      + + KFS + 
Sbjct: 271 FINIENKMKYITMDVS--PIYGKNQEFIGA--YGQFRDITDRVELEQQVIQNE-KFSAIG 325

Query: 209 EIKKGHS 215
            +  G +
Sbjct: 326 RLSAGLA 332


>gi|323965349|gb|EGB60807.1| phosphate regulon sensor kinase PhoR [Escherichia coli M863]
 gi|327254716|gb|EGE66332.1| phosphate regulon sensor kinase PhoR [Escherichia coli STEC_7v]
          Length = 431

 Score =  296 bits (759), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 72/427 (16%), Positives = 152/427 (35%), Gaps = 37/427 (8%)

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             +L       I     L  + W     L +         +        G+    +  + 
Sbjct: 33  WFLLASVTGLLIWHFWNLLRLSW----WLWVDRSMTPPPGRGSWEPLLYGLHQMQLRNKK 88

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            +R++   + +  S  E+  D + +   EG I   N    ++ G    +   +     L 
Sbjct: 89  RRRELGNLIKRFRSGAESLPDAVVLTTEEGGIFWCNGLAQQILGLRWPEDNGQNILNLLR 148

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
               +               +   +         + L +R++           +   D++
Sbjct: 149 YPEFTQYL----------KTRDFSRPLNLVLNTGRHLEIRVMPYTHKQ---LLMVARDVT 195

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  Q +                + +F A VSHE+RTPLT + G+ E++  Q        +
Sbjct: 196 QMHQLEG--------------ARRNFFANVSHELRTPLTVLQGYLEMMDEQPLQGAVREK 241

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                + +      +  +V  LL +SKIE+    L  E V +   +       Q  + ++
Sbjct: 242 A---LHTMREQTQRMEGLVKQLLTLSKIEAAPTQLLNEKVDVPMMLRVVEREAQTLSQQR 298

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           +        N++ ++  +   ++    N++ NA++ TP G  I +      +      V 
Sbjct: 299 Q-TFTFEIDNDL-KVSGNEDQLRSAISNLVYNAVNHTPEGTHITVRWQRVPHG-AEFSVE 355

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G G+    + +  + F ++  ++  +  G+GLGL + K  V+ +  + +I ST  KGT
Sbjct: 356 DNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHAVNHHESRLHIESTVGKGT 415

Query: 803 LIEIIFP 809
               + P
Sbjct: 416 RFSFVIP 422


>gi|46581425|ref|YP_012233.1| sensory box histidine kinase/response regulator [Desulfovibrio
            vulgaris str. Hildenborough]
 gi|46450847|gb|AAS97493.1| sensory box histidine kinase/response regulator [Desulfovibrio
            vulgaris str. Hildenborough]
          Length = 1139

 Score =  296 bits (759), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 104/664 (15%), Positives = 200/664 (30%), Gaps = 64/664 (9%)

Query: 189  VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA 248
                     K        L +        +     I              + S L  Y  
Sbjct: 377  DKRRVEGKIKDQLSYLRQLTDTIPLPVYSKDADGRIRECNLAFLQFFSVERESVLGRYEW 436

Query: 249  HKDDVLKTEKYPLLTS---EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
               + L   +  + T    E       +     +        +  T  N        +  
Sbjct: 437  QAGERLALLRNAVDTDLMREPGQAAYDDTLPGPDGEARNVIVHKATYSNARGAIAGLVGV 496

Query: 306  ----RNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDI 360
                 +           E       +  P+  F  S  G+L  ANP+F  +  Y S   I
Sbjct: 497  VVDYTDRKRAEDSLRAAEEKYRSIFESSPLGIFRLSPEGSLSDANPAFARMAGYDSSPAI 556

Query: 361  --EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
              +    +  LL    L+       +                  +Q    N   M     
Sbjct: 557  MKQGRPAMDALLSGLDLARVGHEGILTWVA-------------DVQRPDGNRCTMHLTLL 603

Query: 419  EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
             + +         G   +    +  +R +      L  +L+     +   +R+   +  N
Sbjct: 604  IRRDALGALRLVEGYAEDITKRKETERALSASQRMLRLVLDNIPQFVYWTDRDLRFIGAN 663

Query: 479  RAVSKLFGY-PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
            R+    FG+    DI        L      ++      ++     +  +     ++   +
Sbjct: 664  RSFLTFFGFAESHDISGLTMNDILTTAVHWIVQEANHAVIETGNPR-YQSKLTITSPAGE 722

Query: 538  LLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
             + L      L       +    T  D+++    + +L  ++K+              +S
Sbjct: 723  KVWLETSRVPLMGERGDVVGLLTTAEDVTQRIHLERQLLQSQKM-----EAIGTLAGGIS 777

Query: 594  HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
            H+    LT+II   E+  N       +  + +      ++      +V  +L  S+    
Sbjct: 778  HDFNNILTSIINSIELAINDV--AADSLTFTDLMR-ALKAAQRGSRLVKQILTFSRPSVE 834

Query: 654  KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713
                 F  V L+E V+EA+ L++       I +RT+   +     AD   + Q+ +N+ +
Sbjct: 835  G----FTTVDLNEVVTEALVLIKASMPR-NIQVRTAVPPDPSITRADPTQLHQVIMNLCT 889

Query: 714  NAIHF-TPSGGQIIISTTHTSNE-------------EVILRVRDTGVGMTNYELEKAMKP 759
            N+ H    SGG + I+                     + L V D G G+    L+K   P
Sbjct: 890  NSFHALRESGGVLDINLEQEPIGPEEAHAFGVEPGCWLRLTVSDNGPGIPQEILDKIFDP 949

Query: 760  FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH---- 815
            F         + EGTGLGL +   ++  + G   + S   + T  EI+ P+ + +     
Sbjct: 950  FFTTKG----KTEGTGLGLAVVHGIIKGHRGAIRVSSLAHRRTAFEILLPMQEQTECPLS 1005

Query: 816  PHDC 819
            P D 
Sbjct: 1006 PADA 1009



 Score =  104 bits (259), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 42/366 (11%), Positives = 112/366 (30%), Gaps = 24/366 (6%)

Query: 239 KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE 298
           + +     + +K+         +L      + E   F+ +N   +        + + +  
Sbjct: 310 ERADEEYMFDNKELTRLFISRSMLPPGSVVINEPSRFYELNKQVFWTIIISLVILSLTLV 369

Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSV 357
                +  +   +     +  +   +  D  P+P +     G +   N +FL     +  
Sbjct: 370 LLVM-NILDKRRVEGKIKDQLSYLRQLTDTIPLPVYSKDADGRIRECNLAFLQFFSVERE 428

Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
             +             +L+         L R         A   T+      +  +    
Sbjct: 429 SVLGRYEWQ----AGERLALLRNAVDTDLMREPGQA----AYDDTLPGPDGEARNVIVHK 480

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
              +N         G+  +  D +  +  +     +  SI E++  GI  ++ EG +   
Sbjct: 481 ATYSNARGAIAGLVGVVVDYTDRKRAEDSLRAAEEKYRSIFESSPLGIFRLSPEGSLSDA 540

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE--ILSLDLRQTLEKITLGSTKE 535
           N A +++ GY     + K             M+  L+   +  +     L  +      +
Sbjct: 541 NPAFARMAGYDSSPAIMK--------QGRPAMDALLSGLDLARVGHEGILTWVADVQRPD 592

Query: 536 EKLLSLRIIIKKLPFSSCYSLTM----HDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
               ++ + +     +      +     DI++ K+ +  LS ++++      +   F+  
Sbjct: 593 GNRCTMHLTLLIRRDALGALRLVEGYAEDITKRKETERALSASQRMLRLVLDNIPQFVYW 652

Query: 592 VSHEIR 597
              ++R
Sbjct: 653 TDRDLR 658



 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 43/385 (11%), Positives = 99/385 (25%), Gaps = 16/385 (4%)

Query: 78  PIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL 137
                +   ++ DA G ++E +    +        ++G       + L +  N    DL+
Sbjct: 396 TDTIPLP-VYSKDADGRIRECNLAFLQFFSVERESVLGRYEWQAGERLALLRNAVDTDLM 454

Query: 138 KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG 197
           +         TL   +G    V +        +     +G    G+V             
Sbjct: 455 REPGQAAYDDTLPGPDGEARNVIV--HKATYSNARGAIAGL--VGVVVDYTDRKRAEDSL 510

Query: 198 KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257
           +  ++K+  + E           +  +         +   +   ++ +      D L + 
Sbjct: 511 RAAEEKYRSIFESSPLGIFRLSPEGSLSDANPAFARMAGYDSSPAIMKQGRPAMDALLSG 570

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
                   E  L    D    + N+ T        ++          +    +     + 
Sbjct: 571 LDLARVGHEGILTWVADVQRPDGNRCTMHLTLLIRRDALGALRLVEGYAEDITKRKETER 630

Query: 318 G----ENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                + +    +D  P    +         AN SFL    +    DI        L  A
Sbjct: 631 ALSASQRMLRLVLDNIPQFVYWTDRDLRFIGANRSFLTFFGFAESHDISGLTMNDILTTA 690

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
                  A   V+      T         TI       + +         +  + +    
Sbjct: 691 VHWIVQEANHAVI-----ETGNPRYQSKLTITSPAGEKVWLETSRVPLMGERGDVVGLLT 745

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSI 457
              +       +R++     ++ +I
Sbjct: 746 TAEDVTQRIHLERQLLQS-QKMEAI 769


>gi|330802407|ref|XP_003289209.1| hypothetical protein DICPUDRAFT_35308 [Dictyostelium purpureum]
 gi|325080737|gb|EGC34280.1| hypothetical protein DICPUDRAFT_35308 [Dictyostelium purpureum]
          Length = 2059

 Score =  296 bits (759), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 82/261 (31%), Positives = 130/261 (49%), Gaps = 10/261 (3%)

Query: 555  SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                  I   K+   K + AK+ AE  S  KSDF+A +SHEIRTP+  IIG +++  +  
Sbjct: 1326 VTINEMIHNLKETTIKNTLAKETAEAASRAKSDFMANMSHEIRTPMNGIIGMTDLTLDTE 1385

Query: 615  FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                      EY   +  S   +L I+ND+LD SKIE+G++ L     SL   + + +  
Sbjct: 1386 LTA----EQREYLTMVQSSAGSLLTIINDILDFSKIEAGRLELDQSDFSLRAHLYDTLKT 1441

Query: 675  VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHT 732
            +   A++K + +    A++IP  ++ D   ++QI  N++ NAI FT  G   +++     
Sbjct: 1442 LAWRAHQKGLELVCDIASDIPDSLVGDPGRLRQIVTNLVGNAIKFTSEGEVDLVVKIDKY 1501

Query: 733  SNEEV--ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
             + EV     V D+G+G+   +L    + F Q   S   R  GTGLGL ++  +V+   G
Sbjct: 1502 IDGEVLLRFSVIDSGIGIPKEKLHLIFEAFSQADGSITRRYGGTGLGLTISTRLVELMKG 1561

Query: 791  KFYIFSTPAKGTLIEII--FP 809
            K  + S P KG+  E    FP
Sbjct: 1562 KLRVVSKPGKGSTFEFTAQFP 1582


>gi|323191317|gb|EFZ76580.1| phosphate regulon sensor kinase PhoR [Escherichia coli RN587/1]
          Length = 431

 Score =  296 bits (759), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 72/427 (16%), Positives = 151/427 (35%), Gaps = 37/427 (8%)

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             +L       I     L  + W     L +         +        G+    +  + 
Sbjct: 33  WFLLASVTGLLIWHFWNLLRLSW----WLWVDRSMTPPPGRGSWEPLLYGLHQMQLRNKK 88

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            +R++   + +  S  E+  D + +   EG I   N    ++ G    +   +     L 
Sbjct: 89  RRRELGNLIKRFRSGAESLPDAVVLTTEEGGIFWCNGLAQQILGLRWPEDNGQNILNLLR 148

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
               +               +   +         + L +R++           +   D++
Sbjct: 149 YPEFTQYL----------KTRDFSRPLNLVLNTGRHLEIRVMPYTHKQ---LLMVARDVT 195

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  Q +                + +F A VSHE+RTPLT + G+ E++  Q        +
Sbjct: 196 QMHQLEG--------------ARRNFFANVSHELRTPLTVLQGYLEMMDEQPLEGAVREK 241

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                + +      +  +V  LL +SKI++   +L  E V +   +       Q  + +K
Sbjct: 242 A---LHTMREQTQRMEGLVKQLLTLSKIQAAPTHLLNEKVDVPMMLRVVEREAQTLSQKK 298

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           +        N + ++  +   ++    N++ NA++ TP G  I +      +      V 
Sbjct: 299 Q-TFTFEIDNGL-KVSGNEDQLRSAISNLVYNAVNHTPEGTHITVRWQRVPHG-AEFSVE 355

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G G+    + +  + F ++  ++  +  G+GLGL + K  V+ +  +  I ST  KGT
Sbjct: 356 DNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHAVNHHESRLNIESTVGKGT 415

Query: 803 LIEIIFP 809
               + P
Sbjct: 416 RFSFVIP 422


>gi|193084137|gb|ACF09803.1| ammonium transporter/integral membrane sensor signal transduction
           histidine kinase [uncultured marine group III
           euryarchaeote SAT1000-53-B3]
          Length = 752

 Score =  296 bits (759), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 89/322 (27%), Positives = 145/322 (45%), Gaps = 11/322 (3%)

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
             + +          +    +   +                L +   +      I++  L
Sbjct: 436 EAEDIGLNIAEHDSSSDQIDLLKIMQYQNDTGDLSVRGPEDLFTEAGQIGYHYNILMSSL 495

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
             S             +++K+ L  A + A+  +  KSDFLA +SHE+RTPL AIIG+SE
Sbjct: 496 EESDKIM---------RKQKDSLKVAMQKAQTANKAKSDFLANMSHELRTPLNAIIGYSE 546

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
           ++  +     G   Y E    I  SG+ +L ++ND+LD+SKIE+GKM+LH E       +
Sbjct: 547 MLIEEADDD-GLETYSEDLAKIHSSGDHLLTLINDILDLSKIEAGKMDLHIEEFDFTNLL 605

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
            +  +  +   ++ +            ++  D   V+QI  N+LSNA  FT  G  I + 
Sbjct: 606 KQIEATARPLVDKNKNKFVIKCKTKKLKLKNDQTKVRQILFNMLSNAAKFTKKG-TITLQ 664

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                 + +   V DTG+GM+  +++K  + F Q  +S      GTGLGLP++K M +  
Sbjct: 665 IKPEKKDNLRFDVIDTGIGMSEEQMDKVFEEFTQAESSTSKDYGGTGLGLPISKKMTEMM 724

Query: 789 MGKFYIFSTPAKGTLIEIIFPL 810
            GK  + S   KGT   II P+
Sbjct: 725 GGKMEVKSKEGKGTTFSIIIPI 746


>gi|170738329|ref|YP_001779589.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia cenocepacia
           MC0-3]
 gi|169820517|gb|ACA95099.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia cenocepacia
           MC0-3]
          Length = 656

 Score =  296 bits (759), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 90/376 (23%), Positives = 153/376 (40%), Gaps = 20/376 (5%)

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
           L  +++A+ D I   +    I S N A + +FG        +     +         H +
Sbjct: 136 LRRVVDASPDAIVGTDAARRITSWNPAAASIFGLDTAQANGRDIVTMIAPRWLR--RHAV 193

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKN 569
               +           L                 +  +  +      T+ +  E ++ + 
Sbjct: 194 PASFADLRAPVGPLDVLCVRPNGGRFRATFAASPIVDAQGHCAGLSLTLREAGERRRSER 253

Query: 570 KL-------SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
                      A+  A+  +  K + LA VSHE+RTPL  I G++EV++N      G   
Sbjct: 254 HHLRSLRGARDARVQADASNRLKDELLATVSHELRTPLNVIYGWAEVLRN----ADGQDF 309

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             +  + IDRS   +  +V DLLD S + +G++ L   PV L     +A   +   A   
Sbjct: 310 AQQAVDAIDRSARSLSHMVADLLDASSLATGRLRLERVPVDLVRIARDAARELDTTAQAN 369

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
            +++ T +A     I AD   ++Q+  N+LSNAI FTP GG++ +S T  + E V L V 
Sbjct: 370 GLVLSTEYAMPACVIPADGERLRQLLSNLLSNAIKFTPPGGRVNVSLT-RAGERVRLSVS 428

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKG 801
           DTG G+    L    + F +   +      G GLGL + + +   + G+    S    +G
Sbjct: 429 DTGQGIAPEYLPHLFETFSRPEGAFTSPKRGLGLGLSIVRNIAQLHGGEVVATSAGAGRG 488

Query: 802 TLIEIIFPL-YDTSHP 816
             + +  P  +D   P
Sbjct: 489 MTVTVTLPAGWDADDP 504



 Score = 60.0 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 45/488 (9%), Positives = 108/488 (22%), Gaps = 41/488 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            DA   +   +       G    +  G  +  +     +  +         +        
Sbjct: 150 TDAARRITSWNPAAASIFGLDTAQANGRDIVTMIAPRWLRRHAVPASFADLRAPVGPLDV 209

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
              +           AA PI       +G          R   + R   +   +      
Sbjct: 210 -LCVRPNGGRFRATFAASPIVDAQGHCAGLS-----LTLREAGERRRSERHHLRSLRGAR 263

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           + +    +  + K ++ +  S    LR    V           D     +  +   + S+
Sbjct: 264 DARVQADASNRLKDELLATVSHE--LRTPLNVIYGWAEVLRNADGQDFAQQAVDAIDRSA 321

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
                  H +           G L+            R+         +   L   T   
Sbjct: 322 RSL---SHMVADLLDASSLATGRLRLERVPVDLVRIARDAARELDTTAQANGLVLSTEYA 378

Query: 329 CPIPFFVYSHGNLFY------------------ANPSFLLLTKYKSVDDIEIAGGLSTLL 370
            P          L                     N S     +   +   +   G++   
Sbjct: 379 MPACVIPADGERLRQLLSNLLSNAIKFTPPGGRVNVSLTRAGERVRLSVSDTGQGIAPEY 438

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
                   +  +           +  S   +  Q +      +                 
Sbjct: 439 LPHLFETFSRPEGAFTSPKRGLGLGLSIVRNIAQLHGGE--VVATSAGAGRGMTVTVTLP 496

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG--IAIINREGIILSTNRAVSKLFGYP 488
            G + +D   + ++ K   + + L        DG  + +++ +    ++  A  +  G  
Sbjct: 497 AGWDADDPMEQPSRAKGASDTVAL--------DGQRVLVVDDDATSRTSLAAALETMGAQ 548

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
           V         +   +  P  +      +   D    L++I         L  + +     
Sbjct: 549 VSTARSGHDALEAVERQPPSVVLSDLAMPDGDGYWLLDRIRRLPNGGGHLPVVAVTAHAG 608

Query: 549 PFSSCYSL 556
                  +
Sbjct: 609 KADRRRVM 616


>gi|159897135|ref|YP_001543382.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159890174|gb|ABX03254.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 785

 Score =  296 bits (759), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 104/544 (19%), Positives = 198/544 (36%), Gaps = 55/544 (10%)

Query: 313 AYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEI---AGGLST 368
             FD         ++       F+ +   +   N +   L   +    I        L  
Sbjct: 229 RLFDTIPIARHILMENLSEGVIFLDAKRRVMDMNATAGKLLDIRPDQQIGQSAIVSILER 288

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN-SLAMTFIPFEKANQFPEN 427
           L        +  ++       D   +    +L  +          +      + +Q+ + 
Sbjct: 289 LDAPQSDDSDEHLRWEYTLHRDEKKLVLDVQLSPLSDRNRYLGHLLLLRDITERHQYEDL 348

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQ-LCSILE------ATSDG-IAIINRE-------- 471
           +         +         +I++ Q L S L+          G I ++++         
Sbjct: 349 LRSQRNLFAGLVEVARATSAQIDLDQTLQSTLDVALHLTTAEQGSIFLLDQHQMVTHSIL 408

Query: 472 -----------------------GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
                                  G I++ N+    L      D                +
Sbjct: 409 AREKATRIEQQNLVGRVMRQGLAGWIVAHNQIA--LIKDTHTDDRWLHLPNAPYNARSVL 466

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568
                     L +   L        +E   L +     ++ F+   +      ++  Q  
Sbjct: 467 ALPIFGTAGILGILMLLHSEVDHFRQEHSEL-MEAATAQISFAIGNAHVYQ--TQQ-QLT 522

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
            +LS AK  AE  S  KS FLA +SHE+RTPLTAIIG+++V++        +  Y+   +
Sbjct: 523 RELSRAKDAAEAASQTKSQFLANMSHELRTPLTAIIGYADVMREDLLDS-NDQIYLADLD 581

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I  +G  +L ++ND+LD+SKIE+GKM +++E   +   +++ I+ V+   +     +  
Sbjct: 582 RIRSAGAHLLGLINDVLDLSKIEAGKMPVYWEQTRVSILLNDVITTVRPQIDRNHNSLMI 641

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILRVRDTG 745
               +      D+  ++++ +N+L NA  FT  G  I +S      +E   + +RV DTG
Sbjct: 642 DQTYHNLMFWTDISKLRRVLINLLGNAAKFTDHG-TISLSLFLDETDEPACLQIRVCDTG 700

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +GMT  ++    + F Q   S   +  GTGLGL +++ +     G   + S    G+   
Sbjct: 701 IGMTAEQVANLFQNFSQADASTTRKYGGTGLGLAISRNLCKLMGGDIEVTSELGHGSTFI 760

Query: 806 IIFP 809
           +  P
Sbjct: 761 VKLP 764


>gi|87303321|ref|ZP_01086114.1| PAS protein [Synechococcus sp. WH 5701]
 gi|87282216|gb|EAQ74177.1| PAS protein [Synechococcus sp. WH 5701]
          Length = 549

 Score =  296 bits (759), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 96/390 (24%), Positives = 167/390 (42%), Gaps = 31/390 (7%)

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
           +L + L +  D + + +  G +  TNRA +   G      L +     L  +    +   
Sbjct: 3   RLEAALSSVEDALVLTDFNGRVEWTNRAFNLFVGQSRLLSLGRLLDDLLPPHFIDGIQET 62

Query: 513 LTEILSLDLRQTLEKIT-LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN-- 569
             ++L          +  L  T   +++ ++     L           D++E  + ++  
Sbjct: 63  PRDLLDGARLGPGSLLWDLTPTPPRRVVEVKWSPVNLKPDPSLVFVFRDLTEITRAQDQI 122

Query: 570 ----------------KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
                           +L  A+  A   +     FL+ +SHEIRTPL A+IG S+++ + 
Sbjct: 123 TKARDTLEQDVAARTLELQLARDEALAATGAMGQFLSTISHEIRTPLNAVIGMSDLLLDT 182

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
                 + +  E  + I+ S  L+L ++ND+LD+SKIE+ KM +  E  SL   V +   
Sbjct: 183 SL----DGQQQELVHTINSSAELLLRLINDILDLSKIEARKMKISSETFSLRSLVLDCCR 238

Query: 674 LVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
           ++      KR+ +R SF+++ P  ++ D   ++QI LN+L+NAI FT  G  + +     
Sbjct: 239 MMDAAVRAKRLELRCSFSDDPPDALIGDGLRIRQIVLNLLNNAIKFTSHGS-VDVKIGWR 297

Query: 733 S----NEEVILRVRDTGVGMTNYELEKAMKPFGQIPN-SQQIRGEGTGLGLPLAKAMVDA 787
                  E+ L V DTG G++   L K  + F Q  N +      GTGLGL +   +   
Sbjct: 298 PLTSSAIELDLVVADTGTGISEDFLSKIFQDFTQEHNQAHASHHHGTGLGLAICDRLCRL 357

Query: 788 NMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
             G     S   +G+   +  PL   S P 
Sbjct: 358 MGGSIEAVSQLGQGSRFHVRLPLKR-SEPE 386


>gi|294495726|ref|YP_003542219.1| multi-sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
 gi|292666725|gb|ADE36574.1| multi-sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
          Length = 637

 Score =  296 bits (759), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 74/251 (29%), Positives = 136/251 (54%), Gaps = 3/251 (1%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
             K+  ++L  A +  +     K +FL+ VSHE++TPLT I G++E++   + G L N  
Sbjct: 384 ALKKNSDELRKANEELKSLDRMKDEFLSNVSHELKTPLTLIKGYTELLCEGKMGQL-NKE 442

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
            IE  N + R+   +  +V+ LL +SKI++  +   FE V + E +   +  +++ A+ K
Sbjct: 443 QIEVQNKVVRNAERLKRLVDSLLYLSKIQASNVEYVFETVHVKEIIEIILEDMRMIADLK 502

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
            I +  +   ++P+I  D   +  +  NI+ NAI FTPSGG++ + T+     ++ + V+
Sbjct: 503 GIELEMNLEEDLPKINGDKDKLTDMITNIVDNAIKFTPSGGKVTV-TSFKKEGDIHIVVK 561

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKG 801
           DTG+G+    ++   + F Q+  S+  +  GTGLGL ++  +  A+ G  +  S    KG
Sbjct: 562 DTGIGIPEDMIDNLFQRFYQLDASRTRKYGGTGLGLYISMTIAQAHHGDIWATSEGEGKG 621

Query: 802 TLIEIIFPLYD 812
           T + I  P+ +
Sbjct: 622 TEMHIEIPISN 632


>gi|153870769|ref|ZP_02000098.1| two-component histidine kinase [Beggiatoa sp. PS]
 gi|152072765|gb|EDN69902.1| two-component histidine kinase [Beggiatoa sp. PS]
          Length = 1262

 Score =  296 bits (759), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 69/250 (27%), Positives = 126/250 (50%), Gaps = 10/250 (4%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           + ++   KL  AK+ AE  +  KSDFLA +SHEIRTP+  IIG +++             
Sbjct: 531 DLQRSTRKLLTAKEQAELANKAKSDFLANMSHEIRTPMNGIIGLTQLALKTDLTA----E 586

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             +Y  +++ S   +L I++D+LD SKIE+G + +     SLD+ +    S++ +   EK
Sbjct: 587 QQDYLTHLESSSQALLVIIDDILDFSKIEAGMLQMELVDFSLDKVLHHLFSVLGMRIEEK 646

Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH----TSNEEV 737
            + +      ++P  ++ D   + Q+ +N+++NAI FT  G +I+I             +
Sbjct: 647 GLELLLDIDKSVPHYLIGDPLRLGQVLINLVTNAIKFTDQG-EILIKIEMLNLTAKQITL 705

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
              ++D+G+G++   + +    F Q   S   +  GTGLGL + K +V+   G  ++ S 
Sbjct: 706 CFSIKDSGIGISPEAIAQLFDAFTQADTSTTRKFGGTGLGLAICKRLVEMMGGNIWVESQ 765

Query: 798 PAKGTLIEII 807
             +G+     
Sbjct: 766 LEQGSSFSFT 775


>gi|17230612|ref|NP_487160.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17132215|dbj|BAB74819.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 1286

 Score =  296 bits (759), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 81/264 (30%), Positives = 146/264 (55%), Gaps = 14/264 (5%)

Query: 559  HDISEWKQEK-------NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
             +++E  Q +        +L+ + +   + +  K +FLA +SHE+RTPL AI+G +E ++
Sbjct: 866  QELAERHQAELKLTQSNQQLAISNQELARATRLKDEFLANMSHELRTPLNAILGMTEGLQ 925

Query: 612  NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
               FG + N ++      I+RS + +LD++ND+LD++KIE+G++ L    +S+      +
Sbjct: 926  EGVFGMINNKQFK-ALETIERSSSHLLDLINDILDVAKIEAGQIKLDCTTISVANLCESS 984

Query: 672  ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
            +  ++  A +KRI +      N+P +  D R ++Q+ +N+L+NA+ FTP  G+I +  T 
Sbjct: 985  LVFIKQQALQKRIQVEIKIPFNLPDLFVDERRIRQVLINLLNNAVKFTPEAGRISLEVTQ 1044

Query: 732  ------TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
                  T    + + V DTG+G+    + K  +PF QI ++   + EGTGLGL L K +V
Sbjct: 1045 LSPDISTVQNFLQIAVIDTGIGIMQENINKLFQPFIQIDSALNRQYEGTGLGLALVKKIV 1104

Query: 786  DANMGKFYIFSTPAKGTLIEIIFP 809
            + + G+  + S    G+   I  P
Sbjct: 1105 ELHGGRVGLTSELGIGSCFTIELP 1128



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/271 (7%), Positives = 76/271 (28%), Gaps = 26/271 (9%)

Query: 335 VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD---------------APKLSDNN 379
           +Y  G +      + +       + +      + +L                  +     
Sbjct: 427 IYRQGRIRVVPDIYTIEMTDCHREFLIRLQTRAKILVPLLCGDELWGLLNVSESQHPREW 486

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM------PQNGI 433
             + V L +     +A +    T     +  L       ++     +         +  I
Sbjct: 487 QTEEVELLQGLSVHLAIAIHQATTHQKLQEQLIALQQRSDQLRGSEQRYITLSQNLEAKI 546

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY---PVE 490
           E    + +  + +++    +L   L++ + G    +     +  +  + +L+G       
Sbjct: 547 EERTAELQAREAQLQKTSDRLSISLKSGAIGCWDWDIVENNIFWDERMYELYGVTKTSDS 606

Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
            ++   +   L  +  + +   + + +        E   +        +    ++ +   
Sbjct: 607 RLVYDTWANRLHPDDRANIEVLVQQAILGQAEYDTEFRVIHPDGSIHFIKAYGVVVRDAE 666

Query: 551 SSC--YSLTMHDISEWKQEKNKLSHAKKIAE 579
            +         DIS+ K+ +  +    +  +
Sbjct: 667 GNPQKMIGVHFDISDRKKSEEIIRQQVEREK 697


>gi|332706883|ref|ZP_08426944.1| PAS domain S-box protein [Lyngbya majuscula 3L]
 gi|332354767|gb|EGJ34246.1| PAS domain S-box protein [Lyngbya majuscula 3L]
          Length = 678

 Score =  296 bits (759), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 92/560 (16%), Positives = 197/560 (35%), Gaps = 55/560 (9%)

Query: 290 GTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSF 348
             L+  +    + ++ R            +      V++ P+ F  +S  G +   N   
Sbjct: 125 APLEATNTALEKEIAERKQTVEELL--RSQQTLSLLVEQTPLGFIEWSLDGEVMQWNHVA 182

Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM----------------------- 385
             +  Y  ++           L  P+ S     + +                        
Sbjct: 183 EKIFGYSKMEAFGHRA---HQLIKPQSSVEQFQRVLQDCLNFQYSNCITENYHPQDGSSI 239

Query: 386 --------LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP-- 435
                   L  SD T I   + +  I   +     +T    E   +  E   Q       
Sbjct: 240 FCQWHNAPLIESDGTIIGVVSVVQDITKRKLEDDVLTQAYEELEQRILERTKQLAAANQV 299

Query: 436 ---EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
              E  + R  + ++   +  L   LE     IA+ +++      +R     +    ++I
Sbjct: 300 LKAEIRERRQVESELGNNLELLNRFLEYVPAAIAMFDQQMRYQFVSRNWYSEYNISDDNI 359

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS- 551
           + K +       TP          L     +  E + + +  E++ L   I         
Sbjct: 360 IGKSYYEVF-PETPEGWKKIHQRCLEGYSAECEEDLFIRANGEQQWLKWEIGPWVDIAGK 418

Query: 552 -SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
            S   ++   I+E K+ +  L    +   + +     F    SH+++ PL AI  +++++
Sbjct: 419 ISGIIMSTEVITERKEAQEALKRLNQDLSQSNRELEQFAYVASHDLQEPLRAISSYTQLL 478

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
             +    L + +  +Y +YI      +  ++ DLL  S++ +    L      +   ++ 
Sbjct: 479 AKKYQSNL-DAQADKYIHYIVDGATNMQQLIQDLLSFSRVGTHGKELAATDCEV--VLNR 535

Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF-TPSGGQIIIST 729
            +  + +   E   ++     +++P ++ D   + Q+  N++ NAI F +    ++ IS 
Sbjct: 536 VLDNLNVAIIESDAIVT---HDSLPVVMGDDIQLSQLLQNLIGNAIKFRSQELPRVHISA 592

Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
              + E +   VRD G+G+     E+    F ++    +    GTG+GL + K +V+ + 
Sbjct: 593 ELKAKEFI-FSVRDNGIGIEPEYFERIFTIFQRLH--TRREYPGTGIGLAVCKKIVERHG 649

Query: 790 GKFYIFSTPAKGTLIEIIFP 809
           GK ++ S    GT      P
Sbjct: 650 GKIWVESELGVGTTFYFSIP 669



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/185 (12%), Positives = 59/185 (31%), Gaps = 3/185 (1%)

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470
           + +       +++ P       +E E  + +    ++      L  ++E T  G    + 
Sbjct: 112 VVVMPKVLAFSSRAPLEATNTALEKEIAERKQTVEELLRSQQTLSLLVEQTPLGFIEWSL 171

Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP-SVMNHYLTEILSLDLRQTLEKIT 529
           +G ++  N    K+FGY   +         ++  +        L + L+      + +  
Sbjct: 172 DGEVMQWNHVAEKIFGYSKMEAFGHRAHQLIKPQSSVEQFQRVLQDCLNFQYSNCITENY 231

Query: 530 LGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
                                 +       + DI++ K E + L+ A +  E+    ++ 
Sbjct: 232 HPQDGSSIFCQWHNAPLIESDGTIIGVVSVVQDITKRKLEDDVLTQAYEELEQRILERTK 291

Query: 588 FLARV 592
            LA  
Sbjct: 292 QLAAA 296



 Score = 40.4 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 22/213 (10%), Positives = 53/213 (24%), Gaps = 29/213 (13%)

Query: 34  FETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFT-WNIDAH 92
            E   +  E    +               +    L S+ T         + F  W++D  
Sbjct: 127 LEATNTALEKEIAE------------RKQTVEELLRSQQTLSLLVEQTPLGFIEWSLDGE 174

Query: 93  GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG----KTT 148
             + + +    K  G    +  G R   +              +L+    +         
Sbjct: 175 --VMQWNHVAEKIFGYSKMEAFGHRAHQLIKP--QSSVEQFQRVLQDCLNFQYSNCITEN 230

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR----ALGKRLDKKF 204
             P +G++  +       P+   +    G     +V                 + L+++ 
Sbjct: 231 YHPQDGSS--IFCQWHNAPLIESDGTIIGV--VSVVQDITKRKLEDDVLTQAYEELEQRI 286

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK 237
               +     + V K +     Q        ++
Sbjct: 287 LERTKQLAAANQVLKAEIRERRQVESELGNNLE 319


>gi|312222389|emb|CBY02329.1| similar to autoinducer 2 sensor kinase/phosphatase luxQ
            [Leptosphaeria maculans]
          Length = 2006

 Score =  296 bits (759), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 105/676 (15%), Positives = 209/676 (30%), Gaps = 103/676 (15%)

Query: 231  PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG 290
            P   +  +  SS  +  A KDD L   + P   S   S      +     + +       
Sbjct: 870  PVVEQHSDSSSSPRDVKAPKDDTLSLRRTPPSGSHNRSHSLLHSYGADFSSSFQSLPAAT 929

Query: 291  TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSF 348
            T          +L   +           E+L    +D  P+  F  +   G + + N  F
Sbjct: 930  TPGGRLSGPHTHLRRGSITESFEMPPPSESLLRTIIDSLPVQIFTAAPTTGAMTWVNSKF 989

Query: 349  LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
            L+         ++       +    +      +            +    R+       +
Sbjct: 990  LIYRGQDCRQVLQDP--WEAIHPEDRGP---YLDEWSKSLRTGQQLQKKVRMQRF---DK 1041

Query: 409  NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR------KMEIEVMQLCSILEATS 462
                         N+  + +   G   +  +  I ++      +      +  ++  ++ 
Sbjct: 1042 CYRWFYVRVAPLKNRQQQIVHWIGTNMDFHEQHIAEQNSARQQETAASEAKYRALANSSP 1101

Query: 463  DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT------PSVMNHYLTEI 516
              + +++    +   N       G      L   F   +  +       P +    +  +
Sbjct: 1102 QIVFVVSNRRGLSFCNSQWITFSGQSEVHALGNGFLEHVHPDDVVKCKLPVLNEDGVANV 1161

Query: 517  LSLDLRQTLEKIT-----------------------------------------LGSTKE 535
             +    +                                               +    +
Sbjct: 1162 PTTLPPENARHEYSSSESSSEGDKTVTSPGNSTPDRLDLPQAKLSKLASTGILSIAKDAD 1221

Query: 536  EKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN--------------KLSHAKKIAEKE 581
             +      +  +          +  + E    ++                   ++  ++ 
Sbjct: 1222 GRASYSTEVRLRNKDGDYRWHLVRILLENSLVEDGEEETWYGTATDINDHKLLEQTLKET 1281

Query: 582  SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
               KS FL+ +SHEIRTPL  I G    + +       N   +E+ N I  S + +L+++
Sbjct: 1282 MDAKSKFLSNMSHEIRTPLNGISGMVNFLLDSVL----NSEQLEHVNIIKASTDSLLNLI 1337

Query: 642  NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILAD 700
            ND+LD+SK+E+G + L  E + +   + E   L    A +K + +       +P  +  D
Sbjct: 1338 NDILDLSKVEAGMIKLSMEWLHVPSLLEEVNDLNMGLAIQKGLELNYLVEEGVPTMVKGD 1397

Query: 701  LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----------VILRVRDTGVGMTN 750
               ++Q+ LN++ NAI FT  G +I +       +           +   V DTG G T 
Sbjct: 1398 KFRIRQVLLNVVGNAIKFTNRG-EIFVRCKMQPPDRSGLLKEHETMIRFEVVDTGQGFTE 1456

Query: 751  YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII--- 807
             E +   K F QI  S   +  GTGLGL ++   V+ + G+    S P +G+        
Sbjct: 1457 AEAKHLFKRFSQIDASSTRQHGGTGLGLAISMQFVELHGGRMDAQSVPGRGSTFFFTIKF 1516

Query: 808  -------FPLYDTSHP 816
                   FP    S P
Sbjct: 1517 GLPTPEDFPKVQPSTP 1532


>gi|144898581|emb|CAM75445.1| PAS [Magnetospirillum gryphiswaldense MSR-1]
          Length = 846

 Score =  296 bits (759), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 100/635 (15%), Positives = 220/635 (34%), Gaps = 29/635 (4%)

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEK--EKYDIFSQQSPPPHLRMKNKVSS 242
                    +     L+     L +  +          +  I    +      +  +  S
Sbjct: 94  RPGETALSRQRYRNELEHVAERLRDEARKVIEHPDVPPEVVILYATAWDAEAGVMARFHS 153

Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302
             +        +    +         +  +   H  +  +  K     +  +        
Sbjct: 154 AVQAVLTGRGGVDALNHREAMLFNEEVASRYRQHVADEVRQLKLVLGVSFTSLLGGLLLL 213

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIP---FFVYSHGNLFYANPSFLLLTKYKSVDD 359
                 P+++    +    +               +   G + +AN     LT+Y     
Sbjct: 214 FVLVLRPAIAMVRQQISRQSALGEAIVQSGHGVLLLDDQGTVGFANTYAESLTEYGEGGL 273

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
             +  G          + +  ++                    ++  R   + +      
Sbjct: 274 DGLDLGRLLFSAYGDDTADIILETAARTTWRGD----------VRIVRRTGVMIWTEMVV 323

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
            A           I  +    R  + K+     +L + +EA  DG A+ + E  ++  NR
Sbjct: 324 TAAASE--GGYLVIFFDATARREAEAKLRQARERLAAAIEAVDDGFALYDAEERLVQCNR 381

Query: 480 AVSKLF-GYPVEDILRKPFTVFLEQNTPSVMNHYLTEI-----LSLDLRQTLEKITLGST 533
               L        +    F   +  +    +            L L   +  +       
Sbjct: 382 KYIALLPQLEPWLVPGTSFASLIVHSWKLGLVDSELAAEQYTNLRLAQFRAGQGQCELRL 441

Query: 534 KEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
           ++ ++L                  + D++     ++ L  A + AE  +  K+ FL+ +S
Sbjct: 442 RDGRILRATDRRTP---EGGRVSVLADVTTLNASRDHLRRALEQAEAANRSKNVFLSSMS 498

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HE+RTPL AI+GF+++++    G  G P       +I R+G L+ ++V+ +L+++ +ESG
Sbjct: 499 HELRTPLNAIVGFAQLLEGTPDGAFG-PSQRRSVGHILRAGKLLDELVHQVLELADLESG 557

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713
            ++L+     L     +A S ++    E ++ +R +  ++      D + + ++  ++LS
Sbjct: 558 NVHLYLTDFDLAAVALDACSRLKNRLQEGQLELRQTGCDSPVGAHGDAQRMAEVIGHLLS 617

Query: 714 NAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
           NAI +   GG I +S       +V L VRD+G G+     ++  +PF ++   +    EG
Sbjct: 618 NAIKYNRPGGSIDLSVD-NMVGKVRLTVRDSGNGIPPDLHDQVFQPFNRL-GGEGAAVEG 675

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           TG+GL + +A++    G     ST  +G+   +  
Sbjct: 676 TGIGLAICRALIQQMGGAIGFSSTLGQGSTFWVEL 710


>gi|189425738|ref|YP_001952915.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi
           SZ]
 gi|189421997|gb|ACD96395.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi
           SZ]
          Length = 827

 Score =  296 bits (759), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 83/329 (25%), Positives = 140/329 (42%), Gaps = 15/329 (4%)

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF-----S 551
              F            LT  +     + L         + ++  L   +           
Sbjct: 353 LIFFYVHYHIINPLSQLTSAIRRLASKDLTIEIPSVESDNEIGELAASVHVFRNMALQID 412

Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
           +      H  ++  +    L+ A+  A+  + +KS+FLA +SHEIR P+  +IG  ++++
Sbjct: 413 NDMLTMQHLQNKLHESLELLTTARNAADAANQNKSEFLANMSHEIRNPMNGVIGMLQLLR 472

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
                        +Y + I+ S + +L I+ND+LD+SKIE+GK+ L     SL   +++ 
Sbjct: 473 FTEL----TDEQKDYLSAIETSADDLLAIINDILDLSKIEAGKIELEISRFSLRRCINDV 528

Query: 672 ISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
           + +    A EK + +       +P  +  D   VKQ+ LN+L NA+ FT  G  I I   
Sbjct: 529 LLMQTSRAFEKGVQVEARLDEQLPLEVYGDQLRVKQVLLNLLGNAVKFTEEG-TISIEAR 587

Query: 731 H----TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
                  N  V + V DTG+GM+   L K   PF Q       R  GTGLGL + + + +
Sbjct: 588 LLQKQDDNSIVQITVSDTGIGMSPEVLGKVFDPFIQADVCTTRRFGGTGLGLTICRQLAE 647

Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
              G+    S   KG+   +  P   ++ 
Sbjct: 648 LMGGRISATSEEGKGSQFYLELPFRLSTQ 676


>gi|332341762|gb|AEE55096.1| phosphate regulon sensor kinase PhoR [Escherichia coli UMNK88]
          Length = 431

 Score =  296 bits (759), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 72/427 (16%), Positives = 151/427 (35%), Gaps = 37/427 (8%)

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             +L       I     L  + W     L +         +        G+    +  + 
Sbjct: 33  WFLLASVTGLLIWHFWNLLRLSW----WLWVDRSMTPPPGRGSWEPLLYGLHQMQLRNKK 88

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            +R++   + +  S  E+  D + +   EG I   N    ++ G    +   +     L 
Sbjct: 89  RRRELGNLIKRFRSGAESLPDAVVLTTEEGGIFWCNGLAQQILGLRWPEDNGQNILNLLR 148

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
               +               +   +         + L +R++           +   D++
Sbjct: 149 YPEFTQYL----------KTRDFSRPLNLVLNTGRHLEIRVMPYTHKQ---LLMVARDVT 195

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  Q +                + +F A VSHE+RTPLT + G+ E++  Q        +
Sbjct: 196 QMHQLEG--------------ARRNFFANVSHELRTPLTVLQGYLEMMDEQPLEGAVREK 241

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                + +      +  +V  LL +SKIE+   +L  E V +   +       Q  + +K
Sbjct: 242 A---LHTMREQTQRMEGLVKQLLTLSKIEAAPTHLLNEKVDVPMMLRVVEREAQTLSQKK 298

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           +        N + ++  +   ++    N++ NA++ TP G  I +      +      + 
Sbjct: 299 Q-TFTFEIDNGL-KVSGNEDQLRSAISNLVYNAVNHTPEGTHITVRWQRVPHG-AEFSIE 355

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G G+    + +  + F ++  ++  +  G+GLGL + K  V+ +  +  I ST  KGT
Sbjct: 356 DNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHAVNHHESRLNIESTVGKGT 415

Query: 803 LIEIIFP 809
               + P
Sbjct: 416 RFSFVIP 422


>gi|330901517|gb|EGH32936.1| PAS protein [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 573

 Score =  296 bits (759), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 89/427 (20%), Positives = 171/427 (40%), Gaps = 28/427 (6%)

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK--R 445
            + R      A         E    +T  P   A +      + GI  E +         
Sbjct: 171 IARRFGAPIEALAKAADRIGEGDYEVTL-PISSAAEMNLLTRRFGIMAEALRQHQATNVD 229

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           ++     +L ++L++  DG+ +I+R+G +   N    +  G+    +             
Sbjct: 230 ELLAGQQRLQAVLDSIDDGLLMIDRQGHLEHLNPVAQRQLGWDESRLGHSLGEALGRPEL 289

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISE 563
              ++  L         + L         E +LL+  +              + +HD++E
Sbjct: 290 DEQLHLVLRGGTLERAPEDLAIEI---DGESRLLTYSMTPVSHTKGHVLGAVMVLHDVTE 346

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            +  +                +S+F+ R SHE+RTP+T  +  +  +  +R       R 
Sbjct: 347 QRAFE--------------RVRSEFVLRASHELRTPVTG-MHMAFGLLQERLHFAPESRE 391

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            +  N +      ++ ++NDLL+ S+ ++G   L   P S++  + EA +  +  A E+ 
Sbjct: 392 ADLLNTVTEEMQRLMQLINDLLNFSRYQNGLQKLKLAPCSIETLLQEAKARFEDQAQEQD 451

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
           I++       +PR+ AD   ++++  N+L NA+  TP  G I +       E  I+ V D
Sbjct: 452 IVLMLDMQEPMPRLHADQSQLERVLDNLLDNALRHTPPNGLIRLQ-ARRHGERAIISVED 510

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
            G G+   +  +  +PF Q+      +  G GLGL L K +V  + G+  ++S P +GT 
Sbjct: 511 NGEGIAYGQQGRIFEPFVQV----GRKKGGAGLGLALCKEIVQLHGGRMGVYSRPGQGTQ 566

Query: 804 IEIIFPL 810
             +  PL
Sbjct: 567 FYMALPL 573



 Score = 45.0 bits (105), Expect = 0.049,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 69/241 (28%), Gaps = 9/241 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G+L+ ++    + +G    + +G  L +      +D       L+ R  T      
Sbjct: 252 IDRQGHLEHLNPVAQRQLGWDESR-LGHSLGEALGRPELDEQ---LHLVLRGGTLERAPE 307

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
              IE       +  +  P+        G     ++H          +  R +      H
Sbjct: 308 DLAIEIDGESRLLTYSMTPVSHTKGHVLGA--VMVLHDVTEQRAFERV--RSEFVLRASH 363

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           E++   + +      +  +    P  R  + ++++TE    +   L  +       +   
Sbjct: 364 ELRTPVTGMHMAFGLLQERLHFAPESREADLLNTVTE-EMQRLMQLINDLLNFSRYQNGL 422

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
              +    +I       K  F                   P L A   + E +    +D 
Sbjct: 423 QKLKLAPCSIETLLQEAKARFEDQAQEQDIVLMLDMQEPMPRLHADQSQLERVLDNLLDN 482

Query: 329 C 329
            
Sbjct: 483 A 483


>gi|149278122|ref|ZP_01884261.1| sensor for ctr capsule biosynthesis; sensor histidine kinase
           [Pedobacter sp. BAL39]
 gi|149231320|gb|EDM36700.1| sensor for ctr capsule biosynthesis; sensor histidine kinase
           [Pedobacter sp. BAL39]
          Length = 815

 Score =  296 bits (759), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 117/787 (14%), Positives = 264/787 (33%), Gaps = 89/787 (11%)

Query: 82  TVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN 141
            V   W  D +      ++      G+    ++G          H    +    ++++  
Sbjct: 56  PVSIYWGADFN---LLYNDAYIAIAGDKHPWILGKPRRMAWPENHELVIDQFDMVMEKGM 112

Query: 142 TWYGKTTLWPIEGTN--LYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199
           +       +PI+  +       D    PI     +  G   + +    RV N+ R    +
Sbjct: 113 SIRKHDQFFPIQRFDFLEECYFDYTLSPILDAEGKVCGVVNYVMETTYRVINERRHSLLQ 172

Query: 200 LDKKFSHLHEIKKGHS--SVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257
                S+L +        ++      I        +       +SLT+    K +  +  
Sbjct: 173 QLNLQSYLFKSGNAFFTKALTPLNQTIEEIAFGMLYQHQAGHGTSLTQAVGMKPEDAEQL 232

Query: 258 KYPLLTS---------------EESSLPEQEDFHTINLNQYTKKQYFGTLQN-------- 294
           ++P  T                +    P               KQ    +          
Sbjct: 233 EWPFSTVLKTGMSQFVDIPESYQGKLFPRNWAVPCQQARIIPLKQTEDHVVGFLVIGIHP 292

Query: 295 ------------------NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY 336
                                     LS      +     E EN     +D   +  + +
Sbjct: 293 GIKMDDSYPNFLDSVSIRLRSAIVNALSAEQELHVFTQIRERENQLQFAIDAAQLGTWDF 352

Query: 337 SHGNLFY-ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIA 395
              +  +  N             +I+++     +++  ++    AI+  + YRS      
Sbjct: 353 DPESNKFTGNERLKSWFGLPPEAEIDLSSATDNIIEKDRIRVLEAIQDALNYRSGG---D 409

Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI--EVMQ 453
                  +    + S  +        ++  + +  +G   +  + +  +  +E   E   
Sbjct: 410 YDIEYTIVNPVTKVSRIVAAKGKALFDEDFKAIRFSGTLQDITEAQTIRLALEQLYEQEC 469

Query: 454 LCSILEATSDGIAIINRE---GIILSTNRAVSKLFGYPVEDILRK--PFTVFLEQNTPSV 508
           L    EA   G    + +   G  +  +     LFG    + +R    F   L  +    
Sbjct: 470 LSR--EAAQLG--TFDMDLIKGT-MDWDDRCRLLFGISHHEPVRYEVDFVAGLHPDDRER 524

Query: 509 MNHYLTEILSLDLR-QTLEKITLGSTKEEKLLSLRIIIKKLPFSS-----CYSLTMHDIS 562
           +   + +     +     +        E+  +       ++ F        +  ++ +I+
Sbjct: 525 ITSIIDKAFVKSISNGIYDVEYRTVGAEDGKVRWIKAKGRVFFDETSRPLRFIGSVLEIT 584

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E K+E+ +              K+DF++ VSHE++TPLT++ G+ + + N R     N  
Sbjct: 585 EQKEEELR--------------KNDFISMVSHELKTPLTSLKGYVQ-LLNMRSKKEDNEF 629

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
            +   N ++     +  ++N  L++S++ESGK++++ E   + + +SE I       +  
Sbjct: 630 AVSNLNKVELQIKKMTAMINSFLNVSRLESGKIHVNMEQFDIGQLISEVIEDAYQIYSSH 689

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
            + +          + AD   ++Q+  N+LSNA+ ++P G  + IS T   + +V + V 
Sbjct: 690 ELNL---IPAEPLMVFADREKIEQVLTNLLSNAVKYSPRGKTVTISYTLRDD-QVEVCVS 745

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G+G+   + ++    F ++ ++      G G+GL L   ++  + G+ ++ S    G+
Sbjct: 746 DEGMGIRTQDKDRLFDRFYRVDSTHTQNISGFGIGLYLCAELIRRHDGRIWVESQKGVGS 805

Query: 803 LIEIIFP 809
                 P
Sbjct: 806 QFYFSIP 812


>gi|90023292|ref|YP_529119.1| Signal transduction histidine kinase-like protein [Saccharophagus
           degradans 2-40]
 gi|89952892|gb|ABD82907.1| ATP-binding region, ATPase-like protein [Saccharophagus degradans
           2-40]
          Length = 765

 Score =  296 bits (759), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 72/273 (26%), Positives = 129/273 (47%), Gaps = 21/273 (7%)

Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKI----------AEKESSHKSDFLARVSHEIRTPL 600
                  + D  + +  +  L   K+           AE  +  KS F+A +SHEIRTP+
Sbjct: 209 ERIRLSMLEDREQRRTVELALMREKEEKIETRRLVQEAEAANRAKSQFIATMSHEIRTPM 268

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
             +IG  E++++       +     Y   I+RSG+ +++I+ND+LD SKIE+GKM+L   
Sbjct: 269 NGVIGMVEMLRDTTL----DDSQRHYLGIIERSGDSLMNIINDILDYSKIEAGKMSLEHM 324

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFT 719
              L+E + + + +     +++ I +  S + N P +++ D   +KQ+ +N++ NA  FT
Sbjct: 325 QFDLEELLEDCVQMFSASTDKRNIELICSISPNTPKQLMGDPTRLKQVLVNLIGNAFKFT 384

Query: 720 PSGGQIIISTTH-----TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
             G  I +              +   V D+G+G+ + + EK    F Q   S   +  GT
Sbjct: 385 SEG-HIYVEARQVNASDADLPMIHFSVEDSGIGIESNQQEKLFDAFCQADGSTTRKFGGT 443

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           GLGL + K + +   G+  ++S    G+     
Sbjct: 444 GLGLTICKQLAEMMGGEIGVYSREKAGSTFWFS 476


>gi|83646440|ref|YP_434875.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83634483|gb|ABC30450.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 418

 Score =  296 bits (759), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 89/248 (35%), Positives = 146/248 (58%), Gaps = 2/248 (0%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E K+ + +L    +     + +K +FL+ +SHE+RTPL AI+G+SEV+ +   G L NP+
Sbjct: 159 ELKRSQQQLREQNRQLGMSNQYKINFLSSMSHELRTPLNAILGYSEVLLDGMMGEL-NPK 217

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
            +EY   I  SG+ +L I+NDLLD+SKIE+GK+ L  +P  ++  V+  I +++  A+  
Sbjct: 218 QLEYCKEIYDSGSYLLIIINDLLDLSKIEAGKLELEIQPTHIEILVNSVIGIIKEKASRH 277

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
            I++ T    +I     D   VKQI +N+LSNAI FT SG Q+ +  +   ++E++++V 
Sbjct: 278 GIILLTDIQEDIGPAELDPLRVKQILINLLSNAIKFTDSGKQVGLKVSLHDDQELLIQVF 337

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRG-EGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
           D G G++  +L++   PF Q  +S + +  EGTGLGL L   +V  + G   + S   +G
Sbjct: 338 DQGCGVSEQDLQRIFLPFEQAESSIKKKNVEGTGLGLALVHKLVLLHGGSIDVKSELGQG 397

Query: 802 TLIEIIFP 809
           +   I  P
Sbjct: 398 SSFFIRLP 405


>gi|42524788|ref|NP_970168.1| sensory transduction histidine kinase [Bdellovibrio bacteriovorus
           HD100]
 gi|39576998|emb|CAE78227.1| sensory transduction histidine kinase [Bdellovibrio bacteriovorus
           HD100]
          Length = 734

 Score =  296 bits (759), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 81/252 (32%), Positives = 132/252 (52%), Gaps = 8/252 (3%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           + +Q + +L  A+  A + S  KS FLA +SHEIRTP+  I+G +EV+ +Q         
Sbjct: 211 QRRQLEKQLVEARNEALQASHMKSSFLANMSHEIRTPMNGILGMTEVLLDQN----PESG 266

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             +    I  S   +L ++N +LD+SKIESGK+ L        + V E I+ V+  A  K
Sbjct: 267 IKKKIQIIRESALNLLSLINGILDLSKIESGKLELEESYFEPRKLVQEVINTVEYSAKSK 326

Query: 683 RILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEE--VI 738
            + +  S +   P     D+  ++QI +N+L NAI F+  G   +I+++  +      + 
Sbjct: 327 GLDLHASVSEQTPAAFSGDVLRLRQILINLLGNAIKFSSEGTVSLIVNSFRSDQSRTMLQ 386

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           ++V+D G+GM    L+K   PF Q   S   +  GTGLGL + K +V+   GK  + S P
Sbjct: 387 IQVKDQGLGMDEATLKKIFSPFEQADKSTTRKFGGTGLGLSITKQLVELMNGKIEVESKP 446

Query: 799 AKGTLIEIIFPL 810
            +G++  +  PL
Sbjct: 447 NEGSIFWVTLPL 458


>gi|108762779|ref|YP_635549.1| response regulator/sensory box histidine kinase [Myxococcus xanthus
           DK 1622]
 gi|108466659|gb|ABF91844.1| response regulator/sensory box histidine kinase [Myxococcus xanthus
           DK 1622]
          Length = 551

 Score =  296 bits (759), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 89/551 (16%), Positives = 180/551 (32%), Gaps = 36/551 (6%)

Query: 281 NQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI-PFFVYSHG 339
                       + +  +  E  +      L         +     +   +         
Sbjct: 13  PWRMTAWGQARREASRVKMPEQPTFHALTRLEPLATSVLLVDDNAANLLALEAVLEPLGQ 72

Query: 340 NLFYAN--PSFLLLTKYKSVDDI------EIAGGLS--TLLDAPKLSDNNAIKPVMLYRS 389
            L  A+  P  L     +    I          G     L+   + +    I  +  +  
Sbjct: 73  RLVRASSGPEALRWLLREDFAVILLDVQMPGVDGFETARLIRQRQRTRYTPIIFLTAHSR 132

Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449
           D   +     +    +  +           +A        Q     E       +R +E 
Sbjct: 133 DEAHLVHGYAVGAADYVVKPFHPDVLRWKVEAFVGLYLQQQRLQRHESALWARERRMLEQ 192

Query: 450 EVM-QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPS 507
           +   +   +++     +  +  +G I   NR      G   E     K     L      
Sbjct: 193 QGELRFRRLVDTMPQFVWELLLDGTIGYANRGWLDYAGLSPEQGRKWKDTLYCLHPEDAP 252

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISE 563
            +     E         LE+       + +                    +  T  DI +
Sbjct: 253 SLRSAWQEAQREG--HPLEQECRLRRADGEYRWFLTRTIPERDEQGQLAGWVSTATDIDD 310

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            ++    L          S  K  FL   +HE+RTPL A  G++  + + + G    P  
Sbjct: 311 ARRAVETL-------RAASEAKDMFLTMAAHELRTPLQAARGYA-HLASVKAGDTLAPGV 362

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            +  + I RS N +  +V +LLD+ +I+ G+++L  + + +   + +     +     + 
Sbjct: 363 DKALHGIHRSVNRMAKLVENLLDVGRIQRGELHLEPKSLDVGALLRDVAEHFEPLPEGQH 422

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
           I +    A     +  D   + Q+  N++SNA+ ++P GG+I +         V + V D
Sbjct: 423 IELD---APEGLVVPGDRERLDQVFTNLVSNALRYSPEGGRIRL-AAREEAGRVHVEVVD 478

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS--TPAKG 801
            G+G+   +LE   + FG+      I   G GLGL +A+ +V+ + G+ +  S  +   G
Sbjct: 479 HGLGIPGEKLENIFERFGRAHG---ISYGGLGLGLSIARGIVERHGGRIWAESPGSQGMG 535

Query: 802 TLIEIIFPLYD 812
           +   ++ P+  
Sbjct: 536 STFHVVLPVEP 546



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/249 (11%), Positives = 63/249 (25%), Gaps = 17/249 (6%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG----DLLKRQ 140
           F W +   G +   +       G    +  G +  D    LH +    +     +  +  
Sbjct: 208 FVWELLLDGTIGYANRGWLDYAGLSPEQ--GRKWKDTLYCLHPEDAPSLRSAWQEAQREG 265

Query: 141 NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
           +    +  L   +G   Y       +P      + +G+                   +  
Sbjct: 266 HPLEQECRLRRADGE--YRWFLTRTIPERDEQGQLAGW--VSTATDIDDARRAVETLRAA 321

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
            +       +         +        +    ++  + ++   +   H           
Sbjct: 322 SEAKDMFLTMAAHELRTPLQAAR---GYAHLASVKAGDTLAPGVDKALHGIHRSVNRMAK 378

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
           L+ +    L +        L+   K    G L  +  E FE L    H  L A       
Sbjct: 379 LVEN----LLDVGRIQRGELHLEPKSLDVGALLRDVAEHFEPLPEGQHIELDAPEGLVVP 434

Query: 321 LTPETVDKC 329
              E +D+ 
Sbjct: 435 GDRERLDQV 443


>gi|229526741|ref|ZP_04416145.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae bv.
           albensis VL426]
 gi|90074862|dbj|BAE87106.1| LuxQ [Vibrio cholerae bv. albensis]
 gi|229336899|gb|EEO01917.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae bv.
           albensis VL426]
          Length = 857

 Score =  296 bits (759), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 81/377 (21%), Positives = 162/377 (42%), Gaps = 21/377 (5%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           R++  +  Q   +         + N  G ++  N +    F              FL + 
Sbjct: 350 RRLANKEKQFEDLFNFALSPTMLWNTSGRLIRMNPSAQIQFLREDAQ------NHFLFEI 403

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT-MHDISE 563
               +   +T+    +    +         + ++    +    +       +T   DI+ 
Sbjct: 404 LERQLLPTITKAAQGNNPSDVTTEV-----DGRVYRWNLSPIMVEGQIISIITQGQDITT 458

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + + +   A++ AE+ +  +++FLA++SHE+RTPL  ++G S+++K        N   
Sbjct: 459 IAEAEKQSQAARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRTPL----NDEQ 514

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            E+   +  SG  +L ++ND+LD S++E GK  +      L E V     + +   +EK 
Sbjct: 515 REHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKNEFRLKELVCAIDRIYRPLCHEKG 574

Query: 684 ILIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EVIL 739
           + +  +        + +D   + QI  N+L+NAI FT  G  I +       +   ++++
Sbjct: 575 LELVVNSNITTATIVRSDQIRINQILFNLLNNAIKFTHQGS-IRVELQLIEGDPLAQLVI 633

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
           +V DTG+G+   +L    +PF Q  ++      G+GLGL +  ++V+   G+ ++ S   
Sbjct: 634 QVVDTGIGIREQDLTVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHVSSEYG 693

Query: 800 KGTLIEIIFPLYDTSHP 816
            GT  EI  P+     P
Sbjct: 694 IGTRFEIQLPIELVERP 710


>gi|302392025|ref|YP_003827845.1| PAS/PAC sensor signal transduction histidine kinase [Acetohalobium
           arabaticum DSM 5501]
 gi|302204102|gb|ADL12780.1| PAS/PAC sensor signal transduction histidine kinase [Acetohalobium
           arabaticum DSM 5501]
          Length = 399

 Score =  296 bits (758), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 79/365 (21%), Positives = 164/365 (44%), Gaps = 11/365 (3%)

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
              L ++L+   D +   N E  IL  N    + F  P ++I  +     +  ++    +
Sbjct: 19  EETLTNVLDNLHDIVIYQNLEREILWANETAIEEFNEPFDEIKERHCYELVHDSSQLCED 78

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570
             + +  +    + +E+  +       L+ +  +  K            +I++ +  K +
Sbjct: 79  CLVEKAEATG--EIVEREKINPNGNLYLVRVYPVKNKEKEIKGIIRISLNITKRRALKER 136

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           L        +++  +++  A +SHE++TPL  +    +++K          +Y+EY N I
Sbjct: 137 L--------EQNRLRTELFANLSHELKTPLNLMFSGMQLLKLNLEKNEDEDKYMEYLNTI 188

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
            R+ N +L +V +L+DI+K++S   +L F+   +   V +    V+ YA  K+  +    
Sbjct: 189 KRNTNRLLKLVENLVDINKLDSRSYDLSFQNCDIVSLVEKVFFSVKEYAENKKRELEFDS 248

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
                 I  D  +++++ LN+ SNAI FT  G +I +  +    + + + V+DTG+G+  
Sbjct: 249 EIEEKVIACDSFNMERVMLNLFSNAIKFTDKGDKISMYLS-DEGDNISISVKDTGIGIPK 307

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            + E   + FGQ+  S     EG+G+GL L   +++ + G+  + S    G+   I  P 
Sbjct: 308 DKQEIIFERFGQVDKSFTRNNEGSGIGLSLVNLIIERHDGEIDLHSEYGSGSEFIIKLPA 367

Query: 811 YDTSH 815
              + 
Sbjct: 368 QKLAQ 372


>gi|257792718|ref|YP_003183324.1| histidine kinase [Eggerthella lenta DSM 2243]
 gi|317489005|ref|ZP_07947532.1| hsp90-like protein [Eggerthella sp. 1_3_56FAA]
 gi|325831168|ref|ZP_08164492.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Eggerthella sp. HGA1]
 gi|257476615|gb|ACV56935.1| histidine kinase [Eggerthella lenta DSM 2243]
 gi|316911872|gb|EFV33454.1| hsp90-like protein [Eggerthella sp. 1_3_56FAA]
 gi|325487089|gb|EGC89535.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Eggerthella sp. HGA1]
          Length = 908

 Score =  296 bits (758), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 102/380 (26%), Positives = 171/380 (45%), Gaps = 21/380 (5%)

Query: 443 NKRKMEIEVMQLCSILEATSDGI-AIIN----REGIILSTNRAVSKLFGYPVEDILRKPF 497
            +R  E  V  L  + EA SD I   +N     +G +        ++ GY ++  L +  
Sbjct: 335 RRRLREQNVAMLGQLYEALSDSIDMAVNLYSPTDGKVTPIVAKAERIIGYRLDAFL-QNE 393

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE-EKLLSLRIIIKKL--PFSSCY 554
            +                I   + +   +      +K+  K       +K+L        
Sbjct: 394 RLAATIGLSPEGVALFDRIRKDETKGFEQGEFSFRSKQTGKECWASYSVKRLTFEDKPQL 453

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
            + M D++  K+ +  +  A  +AE  ++ KS+FL+R+SHEIRTP+  I+G    ++  R
Sbjct: 454 LVVMRDVTADKEIQLSMKDAMDVAEAANAAKSEFLSRMSHEIRTPMNVILG---TLQLAR 510

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
             P    +  E    I  + + +L ++ND+LDISKIE+GKM L  EP  L   +S   S 
Sbjct: 511 SNPDDREKVAETLKKIGDASDHLLGLINDVLDISKIENGKMTLASEPFRLSAVLSHVASA 570

Query: 675 VQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
           V++   ++      +       + + D R +KQ+ LN+L+NA+ +TP GG +   TT   
Sbjct: 571 VRVQCEQRAQEFVVTTPPCADAVFVGDARRIKQLLLNLLTNAVKYTPCGGCVRFETTVAK 630

Query: 734 NE-----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                  +V   V D G+GM+    E   +PF       + R +GTGLG+P+ K +V   
Sbjct: 631 GAAMGYRQVKFTVSDNGIGMSEEFKEHIFEPF---SMEGRSREQGTGLGMPIVKNIVTMM 687

Query: 789 MGKFYIFSTPAKGTLIEIIF 808
            G   + ST  +GT   + F
Sbjct: 688 AGDIAVESTKGQGTTFTVTF 707


>gi|170681341|ref|YP_001742533.1| phosphate regulon sensor protein [Escherichia coli SMS-3-5]
 gi|170519059|gb|ACB17237.1| phosphate regulon sensor protein PhoR [Escherichia coli SMS-3-5]
          Length = 431

 Score =  296 bits (758), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 73/427 (17%), Positives = 149/427 (34%), Gaps = 37/427 (8%)

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             +L       I     L  + W     L +         +        G+    +  + 
Sbjct: 33  WFLLASVTGLLIWHFWNLLRLSW----WLWVDRSMTPPPGRGSWEPLLYGLHQMQLRNKK 88

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            +R++   + +  S  E+  D + +   EG I   N    ++ G    +   +     L 
Sbjct: 89  RRRELGNLIKRFRSGAESLPDAVVLTTEEGGIFWCNGLAQQILGLRWPEDNGQNILNLLR 148

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
               +               +   +         + L +R++           +   D++
Sbjct: 149 YPEFTQYL----------KTRDFSRPLNLVLNTGRHLEIRVMPYTHKQ---LLMVARDVT 195

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  Q +                + +F A VSHE+RTPLT + G+ E++  Q        +
Sbjct: 196 QMHQLEG--------------ARRNFFANVSHELRTPLTVLQGYLEMMDEQPLEGAVREK 241

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                + +      +  +V  LL +SKIE+    L  E V +   +       Q  + +K
Sbjct: 242 A---LHTMREQTQRMEGLVKQLLTLSKIEAAPTQLLNEKVDVPMMLRVVEREAQTLSQKK 298

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           +        N + ++      ++    N++ NA++ TP G  I +      +      V 
Sbjct: 299 Q-TFTFEIDNGL-KVSGSEDQLRSAISNLVYNAVNHTPEGTHITVRWQRVPHG-AEFSVE 355

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G G+    + +  + F ++  ++  +  G+GLGL + K  V+ +  +  I ST  KGT
Sbjct: 356 DNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHAVNHHESRLNIESTVGKGT 415

Query: 803 LIEIIFP 809
               + P
Sbjct: 416 RFSFVIP 422


>gi|218780792|ref|YP_002432110.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfatibacillum alkenivorans AK-01]
 gi|218762176|gb|ACL04642.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfatibacillum alkenivorans AK-01]
          Length = 494

 Score =  296 bits (758), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 99/510 (19%), Positives = 186/510 (36%), Gaps = 45/510 (8%)

Query: 320 NLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKY----KSVDDIEIAG------GLST 368
           +   E     P P F+    G +   N     +       ++VD +   G       L+ 
Sbjct: 2   DTFMEMFRHHPDPAFLADKSGKIIGWNAPADEMLGLPYSPENVDLVANKGVHRFHPSLNE 61

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
           L          + + V+    D         +  IQ N   S A    P    ++     
Sbjct: 62  LFAQCIQRGAGSEQWVLPLPGDMGKPHIRFIVTPIQKNTGVSGAWAVCPRSHEDRDGVCF 121

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
                    +               L +++E+T +GI +++  G +L  N+++  + G+ 
Sbjct: 122 TPENPVVRML-------------SFLTNMIESTVNGIVVMDPRGKVLMFNKSMEIMTGFA 168

Query: 489 VEDILRKP--FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
            ED++  P    +F    T       +               T    ++     + +   
Sbjct: 169 SEDVVGIPGGVDLFYGWETAKRNMKLMRSKQYGRPGILNMVKTELKDRDGNPFPVTLSAG 228

Query: 547 KLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKE--SSHKSDFLARVSHEIRTPLT 601
            +              D+ E ++   +L  A++   +   ++      A V+HEI  PL+
Sbjct: 229 IMFEDGQETGSVGIFGDLRESERLARELRSAQERLIQADRNAALGRLSASVAHEINNPLS 288

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK-IESGKMNLHFE 660
            I+ FSE+++        +P Y +    I         IV +LL  S+  ++G      E
Sbjct: 289 GILMFSEIMQRSL---KDDPVYRDDLKEIIDQTLRCKAIVRNLLGFSRKSDNGN-----E 340

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720
           P  + EA  + + +V   A  + I ++  F  ++P++ AD   ++Q+  N++ NA     
Sbjct: 341 PFDIPEAFRQCLDIVLPQAKFQGIEVKCDFQPDMPKMQADRVQMQQVFTNLVLNAADALE 400

Query: 721 SGGQIIISTTHT-SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
             G I I   H   +    +  RD G G+   ELEK  + F          G GTGLGL 
Sbjct: 401 GKGLICIKARHDFESGYFFMEFRDNGPGVAQGELEKIFESFYTTKP----VGYGTGLGLS 456

Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           + + ++  + G   + + P  GT+  I  P
Sbjct: 457 ITQDIIHNHGGTIGVENHPEGGTIFTIRLP 486



 Score = 40.4 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 25/212 (11%), Positives = 61/212 (28%), Gaps = 28/212 (13%)

Query: 48  SFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRF--------------TWNIDAHG 93
           +  Q N       +V      +  +   F P    VR                  +D  G
Sbjct: 94  TPIQKNTGVSGAWAVCP-RSHEDRDGVCFTPENPVVRMLSFLTNMIESTVNGIVVMDPRG 152

Query: 94  YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW--- 150
            +   ++ +    G  +  ++G+    V      +       L++ +             
Sbjct: 153 KVLMFNKSMEIMTGFASEDVVGIP-GGVDLFYGWETAKRNMKLMRSKQYGRPGILNMVKT 211

Query: 151 -PIEGTNLYVPIDLAALPIYSRNREFSGFRG-FGIVHVNRVDNDPRALGKRLDKKFSHLH 208
              +      P+ L+A  ++  + + +G  G FG +       +   L + L      L 
Sbjct: 212 ELKDRDGNPFPVTLSAGIMF-EDGQETGSVGIFGDLR------ESERLARELRSAQERLI 264

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV 240
           +  +  +             +P   + M +++
Sbjct: 265 QADRNAALGRLSASVAHEINNPLSGILMFSEI 296


>gi|148657135|ref|YP_001277340.1| nitrogen specific signal transduction histidine kinase NtrB
           [Roseiflexus sp. RS-1]
 gi|148569245|gb|ABQ91390.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Roseiflexus sp. RS-1]
          Length = 819

 Score =  296 bits (758), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 77/439 (17%), Positives = 168/439 (38%), Gaps = 34/439 (7%)

Query: 396 ASARLHTIQWNRENSLAMTFIP--FEKANQFPENMPQNGIEPEDVDTRINKRKM----EI 449
             A L          + +  +     +      +        +     I   ++    + 
Sbjct: 243 VRAILQVPLMVGNQVIGVLAVDNQQSERTFSDNDQYLLSALADYAAIAIENARLYEQVKQ 302

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
              +   + +  +D I  ++R+  + S N+    + GY   D++ +P       +  + +
Sbjct: 303 SEARYRDLFDNANDLIFTLDRQFNLRSINKVAPAITGYAQNDLIGRPLREVSFSDAWTYV 362

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS-LTMHDISEWKQEK 568
                ++L        E       +E  +L +   + +    +        D++E ++ +
Sbjct: 363 ERLFNDVLRGQTVPPFELQIRRRDEEIAVLEVSARLIRDGDGAEAIHCIARDLTERRRLE 422

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
            +L  ++K+     S     +A V+HE+  PLT+I G+++++      P       E   
Sbjct: 423 EQLIKSEKL-----SAIGQLVAGVAHEVNNPLTSISGYTQLMLRDASLPSA---IREDLQ 474

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
           +I+        IV +LL  ++    +      PV +++ +   ++L         I + T
Sbjct: 475 HINTQAERAARIVQNLLMFAR----EHKPQRMPVDINQVLQSTLTLRAYQLRVDNITVVT 530

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFT-PSGG--QIIISTTHT--------SNEEV 737
            FA ++P+ +AD   ++Q+ LN+++NA       GG   + + T+              +
Sbjct: 531 DFAPDLPQTVADPHQLQQVFLNLINNAHQAMIERGGKGTLTLRTSVERRVGEGGREETCI 590

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
            + V DTG+G+    L +   PF          G+GTGLGL +   ++  + G+ +  S 
Sbjct: 591 RVAVNDTGIGIPPRNLNRIFDPFFTTKP----IGQGTGLGLSICFGIIQEHHGRIWAESE 646

Query: 798 PAKGTLIEIIFPLYDTSHP 816
              GT + +  PL     P
Sbjct: 647 VGVGTTMYVELPLDHVYEP 665



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 50/449 (11%), Positives = 118/449 (26%), Gaps = 19/449 (4%)

Query: 30  IDNGFETEKSKKENP---CHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFT 86
           +DN  ++E++  +N         + +    +N          ++    +FD         
Sbjct: 263 VDNQ-QSERTFSDNDQYLLSALADYAAIAIENARLYEQVKQSEARYRDLFDNAND---LI 318

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK 146
           + +D    L+ I++  P   G     +IG  L +VS          + + + R  T    
Sbjct: 319 FTLDRQFNLRSINKVAPAITGYAQNDLIGRPLREVSFSDAWTYVERLFNDVLRGQTVPPF 378

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                     + V ++++A  I   +          I               + + K S 
Sbjct: 379 ELQIRRRDEEIAV-LEVSARLIRDGDGA---EAIHCIARDLTERRRLEEQLIKSE-KLSA 433

Query: 207 LHEIKK--GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
           + ++     H             Q       + + +    ++   + +        LL  
Sbjct: 434 IGQLVAGVAHEVNNPLTSISGYTQLMLRDASLPSAIREDLQHINTQAERAARIVQNLLMF 493

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
                P++       + Q T       L+ ++       +     +++      +     
Sbjct: 494 AREHKPQRMPVDINQVLQSTLTLRAYQLRVDNITVVTDFAPDLPQTVADPHQLQQVFLNL 553

Query: 325 TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
             +           G L         + +    +         T +  P  + N    P 
Sbjct: 554 INNAHQAMIERGGKGTLTLRTSVERRVGEGGREETCIRVAVNDTGIGIPPRNLNRIFDPF 613

Query: 385 MLYR--SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
              +     T +  S     IQ +     A + +           +      P       
Sbjct: 614 FTTKPIGQGTGLGLSICFGIIQEHHGRIWAESEVGVGTTMYVELPLDHVYEPPGISSIDS 673

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINRE 471
               +E E +   S        I +++ E
Sbjct: 674 EPASVEAEPLPEES---NGGAAILVVDDE 699


>gi|40841769|gb|AAR92365.1| histidine kinase [Aspergillus parasiticus]
          Length = 708

 Score =  296 bits (758), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 100/556 (17%), Positives = 205/556 (36%), Gaps = 31/556 (5%)

Query: 269 LPEQEDFHTINLNQYT-KKQYFGTLQNNSKESFEYLSHRNH---PSLSAYFDEGENLTPE 324
           L   +   T+NL   T   +      +  K   +     N    P       + +     
Sbjct: 10  LSMHDRAQTVNLPLITTPPEDNDMALSELKGDPKPSPRTNDNCAPDAEHVTSQRDASLCR 69

Query: 325 TVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
                P+P   V ++ ++   + S L L+       +            P     +    
Sbjct: 70  IYRYTPVPTVVVDANLSIVEVSDSHLALSGQTRDTLLNTCICDIAPSIVPVPDTPSLYGA 129

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
           +    S +          +   ++++   +   P  +       + +   +  D     +
Sbjct: 130 IRAAISTKQIQLIDDIHLS---DKKSYFRLQVTPIFQDRTLIYIVFEAHKDTRDRSDSQD 186

Query: 444 KRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            +   +       +++   D  I +++  G I + N   + + GY   +I+ K F+VF  
Sbjct: 187 HQHAYVN-ETYKILVDTVKDYAIFMLDTRGNITTWNPGAAIMKGYSASEIIGKHFSVFYS 245

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMH 559
                        +        +E       ++       ++I  +        +     
Sbjct: 246 PEDRRNNKPG-RGLALCLRDGRMEDEGWRYRQDGSRFWANVMITPVYEFGRHVGFVKVTR 304

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           D++E K  + +L       E+ S  K+DFLA +SHEIRTP+  +     ++ +       
Sbjct: 305 DLTERKAAEGRLI---AAFEESSRLKTDFLANMSHEIRTPMNGMRLALSMLTDTEL---- 357

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
           +    EYA+ I+ S +++L I+ND+LD SK+ SG  +L  + V ++  V   +   +   
Sbjct: 358 DKNQREYASIIEDSTSVLLQIINDILDYSKLSSGSFSLTSDIVEVESVVGAVVRNCKS-C 416

Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH----TSN 734
            +  + +  S   N P+ +  D    +Q+  N++ NA+ FT  G  + IST+        
Sbjct: 417 LKPGVTLSCSMPPNFPQAMRGDPLRYRQVLQNLVGNAVKFTEKG-HVKISTSFAIDTEDP 475

Query: 735 EEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
               +   V D+GVG+    +     PF +  +S + + +GTGLGL + K++ +   G  
Sbjct: 476 RMYNISTEVVDSGVGVPGNAINTLFTPFTRFADSTRRKYQGTGLGLSICKSLAELMNGSI 535

Query: 793 YIFSTP-AKGTLIEII 807
                P   G++    
Sbjct: 536 GYRPNPDGPGSVFWFT 551



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 54/181 (29%), Gaps = 17/181 (9%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI--DPNNHIGDLLKRQNTW 143
            + +D  G +   +       G  A ++IG              +       L  R    
Sbjct: 208 IFMLDTRGNITTWNPGAAIMKGYSASEIIGKHFSVFYSPEDRRNNKPGRGLALCLRDGRM 267

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +   +  +G+      ++   P+Y    EF   R  G V V R   + +A   RL   
Sbjct: 268 EDEGWRYRQDGS--RFWANVMITPVY----EFG--RHVGFVKVTRDLTERKAAEGRLIAA 319

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
           F     +K    +    +          P   M+  +S LT+    K+           T
Sbjct: 320 FEESSRLKTDFLANMSHEIR-------TPMNGMRLALSMLTDTELDKNQREYASIIEDST 372

Query: 264 S 264
           S
Sbjct: 373 S 373


>gi|313149253|ref|ZP_07811446.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
 gi|313138020|gb|EFR55380.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
          Length = 525

 Score =  296 bits (758), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 107/535 (20%), Positives = 211/535 (39%), Gaps = 39/535 (7%)

Query: 290 GTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI--PFFVYSHGNLFYANPS 347
             L+   K   +     +           E  +   +D  P     F ++   +  A+  
Sbjct: 14  ELLEIVEKLEKKVEGLSSELDSLKKGRFRERYSTRILDALPDMLTVFDHNANIVELASSP 73

Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
                +  + + I  +         P+ +  +  + +           A    H++  + 
Sbjct: 74  TTNHVEGTTAESIINSNVRD---IVPEEAYESVRQNMDKVIRTGKSSIAE---HSLTLDG 127

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS----ILEATSD 463
              +   +            +       ++ +          E+++L S    IL     
Sbjct: 128 ---VLHHYENRIFPLDDQYLLCMCRDVSQETEMARTNEAQRSEIVRLNSLMNDILNNIPV 184

Query: 464 GIAIINR--EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN-TPSVMNHYLTEILSLD 520
            + + +   +   L  N+A ++  G  VE  +                +     + + L 
Sbjct: 185 YLFVKDTGNDFRYLYWNKAFAEYSGISVERAVGSTDAEIFPDKKDAERLRQDDLKAMELG 244

Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY---SLTMHDISEWKQEKNKLSHAKKI 577
             + LE     +T   +  ++  +   +P    Y        D++E K+ + +L  A+  
Sbjct: 245 RIEYLE---TYTTMSGEARTVTTMKTVVPSGGRYPYIIGVSWDVTETKKTEKELIAARIK 301

Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
           AE+    KS FLA +SHEIRTPL AI+GFS++I              +YA+ ++ + +++
Sbjct: 302 AEEADRMKSSFLANMSHEIRTPLNAIVGFSKLIIE----ADDEYEKRQYADIVEHNSSVL 357

Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR- 696
           L++ ND+LD+S +E+G + L + PV L +     + L +LY    +  +R       P+ 
Sbjct: 358 LNLFNDILDLSALEAGSLELSYHPVKLKDI---CLQLHELYVKSVKPEVRLMLDEVDPQL 414

Query: 697 -ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755
            I  D   + QI +N+++NAI FT +G +I         + V   V DTG G+    +  
Sbjct: 415 CIQGDWERISQILVNLITNAIKFTSAG-EIHFGFQ-EKADMVQFYVSDTGKGIPAERVAT 472

Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             + FG+I +      +GTGLGL + + +V+   G+ ++ S   KGT+     P+
Sbjct: 473 IFQRFGKIDDF----VQGTGLGLTICRMLVEKMGGRIWVRSKQGKGTVFYFTLPV 523



 Score = 41.6 bits (96), Expect = 0.61,   Method: Composition-based stats.
 Identities = 26/283 (9%), Positives = 66/283 (23%), Gaps = 26/283 (9%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG---DLLKRQN 141
           F  +          ++   +  G    + +G    ++      D           ++   
Sbjct: 187 FVKDTGNDFRYLYWNKAFAEYSGISVERAVGSTDAEI-FPDKKDAERLRQDDLKAMELGR 245

Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
             Y +T    + G    V      +P   R     G     +                  
Sbjct: 246 IEYLETYT-TMSGEARTVTTMKTVVPSGGRYPYIIG-----VSWDVTETKKTEKELIAAR 299

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
            K      +K    +           ++P   +   +K+    +    K       +   
Sbjct: 300 IKAEEADRMKSSFLANMSH-----EIRTPLNAIVGFSKLIIEADDEYEKRQYADIVE-HN 353

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG--- 318
            +   +   +  D   +         +   L++   +  E       P +    DE    
Sbjct: 354 SSVLLNLFNDILDLSALEAGSLELSYHPVKLKDICLQLHELYVKSVKPEVRLMLDEVDPQ 413

Query: 319 -------ENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKY 354
                  E ++   V+         S G + +       + ++
Sbjct: 414 LCIQGDWERISQILVNLITNAIKFTSAGEIHFGFQEKADMVQF 456


>gi|218897642|ref|YP_002446053.1| sensor histidine kinase [Bacillus cereus G9842]
 gi|228965569|ref|ZP_04126651.1| hypothetical protein bthur0004_23960 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|218544112|gb|ACK96506.1| sensor histidine kinase [Bacillus cereus G9842]
 gi|228794162|gb|EEM41683.1| hypothetical protein bthur0004_23960 [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 590

 Score =  296 bits (758), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 88/507 (17%), Positives = 178/507 (35%), Gaps = 41/507 (8%)

Query: 314 YFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
              + E      +   P+    +  +G+    N    ++T Y + + I     L  L   
Sbjct: 102 LLSQKEEELHTILQNMPVMVDALDYNGDFVLWNRECEIVTGYTAEEIIGNPNALQLLYPD 161

Query: 373 PKLSDNNAIKPVM----LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
                    K +         +      +  + TI W+                      
Sbjct: 162 HSYRQQIQKKFLTCGKNFRDWEMHLTCKNGEIKTIMWSN-----------ISEQFPVTGY 210

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
               +  +    +  + +++ +  +L  I +A  D   +   +G I+         F  P
Sbjct: 211 SYWAVGVDITHLKAIEEQLKQQTSELELIFKALPDLCFLTEDDGTIIDYKAGSPTKFYVP 270

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            E  + K F   L  +        + ++        +E           +         L
Sbjct: 271 AEAFMGKKFYEVLPSSVAQQFQEAINQVKKKGTNVIVEYPLTL---NGSIDFFEARCLPL 327

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                  + + DI+E K+ +  L+ +  +A           A V+HE+R PLT I GF +
Sbjct: 328 LHDK-IMIIVRDITERKKTEELLNKSDTLA-----AIGQLAAGVAHEVRNPLTVIKGFIQ 381

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
                    +       Y + +      +  I+ + L I+K +     ++ E  ++ +  
Sbjct: 382 ------LFQINKEDQERYFDLMLSEIERIEAILQEFLSIAKTD----EINTEKKNIYQIF 431

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
              +SL+   A    I +     +    I      +KQ+ +NIL N+I   P+GG+I I 
Sbjct: 432 KNVVSLMNTKAIMTNIQVELFTDDKDIIIECSENQLKQVFINILQNSIEAMPNGGEISIH 491

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
               +++ VI+ V D G+G+    +++  +PF         + +GTG+GL L+  +++++
Sbjct: 492 IKEINDDGVIIHVIDEGIGIPEERIKRLGEPFY------STKEKGTGIGLMLSYKIIESH 545

Query: 789 MGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            G   I S    GT + I  P   +  
Sbjct: 546 QGTISIMSEVGVGTTVTIYLPKVQSKQ 572


>gi|188590708|ref|YP_001921035.1| sensory transduction histidine kinase [Clostridium botulinum E3
           str. Alaska E43]
 gi|188500989|gb|ACD54125.1| sensory transduction histidine kinase [Clostridium botulinum E3
           str. Alaska E43]
          Length = 664

 Score =  296 bits (758), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 84/369 (22%), Positives = 166/369 (44%), Gaps = 5/369 (1%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           K      +L   LE  +D  AI   +G  +      +K+ G+  E+++    T  + ++ 
Sbjct: 264 KRAESEKELELFLETATDLCAIAKDDGYFVKVTDNWTKVLGWSKEELINMKCTDLIHKDD 323

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
              +   +      +  + +  I     K  +   +      +     + +T  DI+ + 
Sbjct: 324 LPRIYKLIKLAQGYNKWKYVGFIDKCLCKNGEYRIIEWNWSYINGGKTFIMTGKDITNYN 383

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK---NQRFGPLGNPR 622
           +   + +   + A    S K+ F A +SHE +TPL  I+  +++++    +    L    
Sbjct: 384 ELALE-NKRLENAIALESLKTQFFANLSHEFKTPLNIILTTAQLMESYIKKFDDMLEKQS 442

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             +Y   + ++   +L +VN+L+DI+KI+ G   ++    ++   + E +  V  Y   K
Sbjct: 443 MGKYVRGLKQNSYRLLKLVNNLIDITKIDGGHYKVNMVNKNIVNVIEEIVLSVAEYTKNK 502

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-SNEEVILRV 741
              I          +  D   +++I LN++SNA+ +T   G I ++ +    + EVI+ V
Sbjct: 503 ERNIIFDTDEEEIILACDPEKIERIILNLVSNALKYTEKDGIIKVNISTNLHDNEVIISV 562

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
           +D G+G+     EK  + F Q+ NS     EG+G+GL L K++V+ + GK +I S   +G
Sbjct: 563 KDNGIGIPKEYKEKIFERFKQVENSLHKNYEGSGIGLSLVKSIVEMHEGKIWINSESDEG 622

Query: 802 TLIEIIFPL 810
           T I    P+
Sbjct: 623 TEIIFTLPI 631


>gi|303247531|ref|ZP_07333802.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfovibrio fructosovorans JJ]
 gi|302491011|gb|EFL50905.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfovibrio fructosovorans JJ]
          Length = 794

 Score =  296 bits (758), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 108/820 (13%), Positives = 247/820 (30%), Gaps = 94/820 (11%)

Query: 46  HDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAH-GYLKEISEELPK 104
             S + S+    +  + S   Y+  E       + R     + +D H G L E ++    
Sbjct: 10  SQSPDVSSGRKTDAPAASQP-YVRDELRLFHALLDRANDPIFLVDTHSGVLLEANQAAID 68

Query: 105 TIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLA 164
            +G      +      +     +  +  +   L            +  + + +    +L 
Sbjct: 69  LLGLSK---VDQAWKSLLQNFSVVRHAPLSGCLDDVPEGETHEVAY-TDRSGVRRLFELT 124

Query: 165 ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDI 224
              +   +  ++     G+        +     +  +++     E               
Sbjct: 125 LSTMRIDDHRYT----VGVARDITTRKETECALRHREQQLRTFFETAPVGIFTTTTSGRH 180

Query: 225 FSQQSPPPHL------RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTI 278
                    +          +V        + D   + E    L  + +    +    T 
Sbjct: 181 LFSNEANARIHGYASPEEFQQVIGEKVVSLYVDAAERRELLQRLARDGAVESFETRHRTK 240

Query: 279 NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE----TVDKCPIPFF 334
           + +      +    +                +      +      E     V+    P F
Sbjct: 241 DGSVIWIAVWAKLRRAADGTQDLIEGFCIDITERKKAVQEIREAREYLNSIVNTIGDPIF 300

Query: 335 V-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393
           V         AN +   L      + +             +++    +  ++L    +  
Sbjct: 301 VKNEQHRFMLANDALCALMGRPREEILGRTDA--DFFPKEQVNAFWKVDDMLLATGLQNV 358

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
              S        +    L        +           G+  +  + +  +R +E    +
Sbjct: 359 SEESLT------DGRGELRTIVTKKTRYVDALGRKSVVGVIRDITERKRMERNLEASEEK 412

Query: 454 LCSILEATSDGIAI--INREGIILS--TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
             SI+E++   +    +  +G +L    N A   L G+    ++ +P          +  
Sbjct: 413 FRSIVESSPTAMFFYHLEPDGGLLLTGANPAADVLVGFDRSTLVGRPLEAVFPGLADTRY 472

Query: 510 NHYLTEILSLDL-----RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564
                ++   D+         +   L    + ++                 + + D++E 
Sbjct: 473 PDLYRQVARGDVGAQSYEAPYQDERLSGHHDVRVFR--------TGPDAIVVDILDVTER 524

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV--IKNQRFGPLGNP- 621
            + +  +  ++K+A           A ++HEI  PL++I+  ++V  ++     P     
Sbjct: 525 LRLQEMMVQSEKMA-----SVGGLAAGMAHEINNPLSSILQAAQVCLMQLDPALPANQEG 579

Query: 622 ------------------RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
                             R  ++   I  +G     IV+ +L+ S+    K      PV 
Sbjct: 580 ADACGCSVEAVRCYLEKRRVFKFLAGIQEAGKRAAGIVSSMLEFSR----KSESRRAPVD 635

Query: 664 LDEAVSEAISLVQLYANEK------RILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
           ++  +  ++ L     + K       I I   +A ++P +      ++Q+ LN+L NA  
Sbjct: 636 INAVLDRSVELASTDYDLKKNYDFRHINIIRRYAEDLPEVTCTRTEIEQVVLNLLKNAAQ 695

Query: 718 FT----PSGG--QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
                 P+ G   I++ T+ T    V + V D G GM +    +  +PF          G
Sbjct: 696 AMAGYPPAAGAPTIVLGTSRTPTG-VRIEVTDNGPGMVDPVRRRVFEPFFTTKEP----G 750

Query: 772 EGTGLGLPLAKAMVDA-NMGKFYIFSTPAKGTLIEIIFPL 810
            GTGLGL ++  ++ A + G   + S P  G    +  P+
Sbjct: 751 LGTGLGLAVSYFIITANHGGTISVESEPGGGATFIVELPV 790


>gi|302188965|ref|ZP_07265638.1| PAS [Pseudomonas syringae pv. syringae 642]
          Length = 595

 Score =  296 bits (758), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 89/427 (20%), Positives = 171/427 (40%), Gaps = 28/427 (6%)

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK--R 445
            + R      A         E    +T  P   A +      + GI  E +         
Sbjct: 193 IARRFGAPIEALAKAADRIGEGDYEVTL-PISSAAEMNLLTRRFGIMAEALRQHQATNVD 251

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           ++     +L ++L++  DG+ +I+R+G +   N    +  G+    +             
Sbjct: 252 ELLAGQQRLQAVLDSIDDGLLMIDRQGHLEHLNPVAQRQLGWDESRLGHSLGEALGRPEL 311

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISE 563
              ++  L         + L         E +LL+  +              + +HD++E
Sbjct: 312 DEQLHLVLRGGTLERAPEDLAIEI---DGESRLLTYSMTPVSHTKGHILGAVMVLHDVTE 368

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            +  +                +S+F+ R SHE+RTP+T  +  +  +  +R       R 
Sbjct: 369 QRAFE--------------RVRSEFVLRASHELRTPVTG-MHMAFGLLQERLHFAPESRE 413

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            +  N +      ++ ++NDLL+ S+ ++G   L   P S++  + EA +  +  A E+ 
Sbjct: 414 ADLLNTVTEEMQRLMQLINDLLNFSRYQNGLQKLKLAPCSIETLLQEAKARFEDQAQEQD 473

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
           I++       +PR+ AD   ++++  N+L NA+  TP  G I +       E  I+ V D
Sbjct: 474 IVLMLDMQEPMPRLHADQSQLERVLDNLLDNALRHTPPNGLIRLQ-ARRHGERAIISVED 532

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
            G G+   +  +  +PF Q+      +  G GLGL L K +V  + G+  ++S P +GT 
Sbjct: 533 NGEGIAYGQQGRIFEPFVQV----GRKKGGAGLGLALCKEIVQLHGGRMGVYSRPGQGTQ 588

Query: 804 IEIIFPL 810
             +  PL
Sbjct: 589 FYMALPL 595



 Score = 45.4 bits (106), Expect = 0.042,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 69/241 (28%), Gaps = 9/241 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G+L+ ++    + +G    + +G  L +      +D       L+ R  T      
Sbjct: 274 IDRQGHLEHLNPVAQRQLGWDESR-LGHSLGEALGRPELDEQ---LHLVLRGGTLERAPE 329

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
              IE       +  +  P+        G     ++H          +  R +      H
Sbjct: 330 DLAIEIDGESRLLTYSMTPVSHTKGHILGA--VMVLHDVTEQRAFERV--RSEFVLRASH 385

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           E++   + +      +  +    P  R  + ++++TE    +   L  +       +   
Sbjct: 386 ELRTPVTGMHMAFGLLQERLHFAPESREADLLNTVTE-EMQRLMQLINDLLNFSRYQNGL 444

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
              +    +I       K  F                   P L A   + E +    +D 
Sbjct: 445 QKLKLAPCSIETLLQEAKARFEDQAQEQDIVLMLDMQEPMPRLHADQSQLERVLDNLLDN 504

Query: 329 C 329
            
Sbjct: 505 A 505


>gi|329849064|ref|ZP_08264092.1| sensory box protein [Asticcacaulis biprosthecum C19]
 gi|328844127|gb|EGF93696.1| sensory box protein [Asticcacaulis biprosthecum C19]
          Length = 703

 Score =  296 bits (758), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 102/570 (17%), Positives = 196/570 (34%), Gaps = 67/570 (11%)

Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKY 354
           +  S +      H          E      +D   I  + V       + +     +   
Sbjct: 7   AAISAKTEPRTGHSEPHDRTLITEEQLRLALDAAEIGLWDVDVAAGKLFWDARCKAMFGV 66

Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
                +     +          D  A     L   D    +     +             
Sbjct: 67  APDVQV----TMDDFYAGLHPDDRAATIAAYLAAQDPAQRSFYDVEYRTVGADGVVRWAA 122

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII 474
                        +   G   +    +  +R+         +++   +D + I + +  +
Sbjct: 123 AKGRAIFEDDGRCIRVVGNIIDITARKQAERR--------QAVMLELTDLLRIGDTDQAL 174

Query: 475 LSTNRAVSKLFGYP--------------------------------VEDILRKPFTVFLE 502
            +    + + FG                                     +  +     L 
Sbjct: 175 HAACALMGRYFGVSRVGYGLLDPVEDIFSYTVCWTDGFVPPLLGDYPAHVFGEKIVAALS 234

Query: 503 QNTPSVMNHYLTEILSLDLR----------QTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
                V++      +S + R          + +  +        + +      +   +  
Sbjct: 235 AGQTIVVDDLFAASISDEARTLETAADVDTRAILVVPFLRGGRLRTIVYLNAQQPRHWDP 294

Query: 553 CYSLTMHDISEWKQEK-------NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
                M  ++E  ++         +L+ A++ AE+ S  K++FLA +SHEIRTP+ AIIG
Sbjct: 295 AEIAFMEAVAERTRQLIDRAENIRELTQARRKAEEASLAKTEFLANMSHEIRTPMNAIIG 354

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
              ++           R  E+   ++ S   +L+++NDLLD++KIE+  + L   P SL+
Sbjct: 355 IGTLLA---MSQPLTARQQEFVKTLNVSAKGLLELINDLLDVAKIEAHTVELEEVPFSLE 411

Query: 666 EAVSEAISLVQLYANEKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724
           + + E  S++ + + EK +   T+  +        D   ++QI LN+ SNA+ FT +GG 
Sbjct: 412 QILLEVASMMTVRSREKGLTFTTAIDSIRGRTFAGDPMRLRQIVLNLCSNAVKFTQTGG- 470

Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
           + I     + + V + VRDTG+G+    L      F Q  NS   +  GTGLGL + + +
Sbjct: 471 VEIRVACGAEDSVAISVRDTGIGIAPENLSTIFDKFVQADNSISRKYGGTGLGLAITRNL 530

Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
            +   G   I S P  G+   +  PL  T 
Sbjct: 531 AELMGGAIAIDSQPGHGSTFTVTLPLRLTD 560


>gi|153932079|ref|YP_001382738.1| sensory box histidine kinase [Clostridium botulinum A str. ATCC
           19397]
 gi|153934988|ref|YP_001386289.1| sensory box histidine kinase [Clostridium botulinum A str. Hall]
 gi|152928123|gb|ABS33623.1| sensory box histidine kinase [Clostridium botulinum A str. ATCC
           19397]
 gi|152930902|gb|ABS36401.1| sensory box histidine kinase [Clostridium botulinum A str. Hall]
          Length = 615

 Score =  296 bits (758), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 89/397 (22%), Positives = 172/397 (43%), Gaps = 11/397 (2%)

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
           +  +   N+  N ++ +++  R  ++ +         ++  + D I +  R G I+  N 
Sbjct: 192 RQKEEEVNILANKLDQKEMQKRCMEQLLIKNENCYNLLIRNSKDAILVH-RYGKIIFANE 250

Query: 480 AVSKLFGYPVED-ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
            + ++ GY  E           + ++  + + + L  +        +         +EK 
Sbjct: 251 RLKQMLGYKKEYNFEDIDIKSLIPKDEYNTVKNKLENLY-YGSENVVNFQHNVINNKEKT 309

Query: 539 LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK------SDFLARV 592
           +                  +HD++   Q +      KK  E  +  +      ++FL+ +
Sbjct: 310 IQNTSTYVIYDGMPTIFSILHDVTSKIQVEKFEQDVKKNIELLNESREYNKLITEFLSNI 369

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHE++TPL  I    + +       +   +  +Y   I ++   ++ ++N+LLD +K++S
Sbjct: 370 SHELKTPLNVIFTAVQ-LLGFYEKDVDYEKQDKYLKLIKQNCYRLMKLINNLLDTTKLDS 428

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712
           G + L+    ++   + E    V  YA  K I I          I  D   +++I LN+L
Sbjct: 429 GYLKLNLVNYNIVNLIEEITLSVTSYAESKGINIIFDTNVEEKIIAVDTDKIERIILNLL 488

Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           SN+I FT  GG I ++      E V + V+DTGVG+ + +LE   + F Q+  + +   E
Sbjct: 489 SNSIKFTNPGGNIFVNVK-DCGENVYVHVKDTGVGIPSDKLESIFERFFQVDKTLKKNKE 547

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GTG+GL L K+ V+ + G  +I S   +GT   I  P
Sbjct: 548 GTGIGLHLVKSFVEMHNGTVHIKSELGQGTEFIIKLP 584


>gi|219669755|ref|YP_002460190.1| histidine kinase [Desulfitobacterium hafniense DCB-2]
 gi|219540015|gb|ACL21754.1| histidine kinase [Desulfitobacterium hafniense DCB-2]
          Length = 601

 Score =  296 bits (758), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 82/364 (22%), Positives = 148/364 (40%), Gaps = 34/364 (9%)

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
           +  E   L  I+E  SDG+ +++ EG IL TN     L            +     +   
Sbjct: 270 LSEERNLLLGIVEGISDGVIMLDGEGEILYTNEPAKAL------------WQGSGSEEES 317

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISEWK 565
           S     L   L   +        +    + ++L + +   +       Y   + DI+   
Sbjct: 318 SERKETLMAFLRESMEGVEIDKKIHFNLDTQVLQVAMATTQFEDGKQGYVAVLRDITASL 377

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + + +              + DF+A V+HE+RTPL  I G+ E I++   G +      E
Sbjct: 378 RAEKE--------------RRDFMASVTHELRTPLHLIQGYLEAIQD---GVIAKEEQTE 420

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           + + +      +  +V +L ++ + ES K N   + + L   + E     Q  A+E  I 
Sbjct: 421 HIDLVLEEAKRLAKLVMELQELDRFESWK-NFEKKEIDLAGFIQELGYRFQGRADELGIH 479

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           ++      +  I A+   + Q+ +N++ NA   TP G  + I     S E +   V D G
Sbjct: 480 LQMDNGKGV--IHANRDRLLQVFINLIENAFRHTPEGKSVYIRI-IDSEEHIQFNVEDQG 536

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
            G+    L      F ++  S+  +  G GLGL +   +V+A+ G+  + S   KGT  +
Sbjct: 537 EGIPPQALPHIFDRFYRVDKSRSRKEGGMGLGLSIVMLIVEAHNGEIKVESEVGKGTTFK 596

Query: 806 IIFP 809
           +I P
Sbjct: 597 VILP 600


>gi|209695938|ref|YP_002263868.1| hybrid sensory histidine kinase BarA [Aliivibrio salmonicida
           LFI1238]
 gi|208009891|emb|CAQ80204.1| response regulator, histidine kinase VarS [Aliivibrio salmonicida
           LFI1238]
          Length = 929

 Score =  296 bits (758), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 88/341 (25%), Positives = 157/341 (46%), Gaps = 19/341 (5%)

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
           F + +   + +P +  +      V++      L++ +   L             +++ + 
Sbjct: 191 FAFRLMQDVTQPISHMVS-----VVDRIRRGHLNVRIENKLHGELDTLKNGINAMAISLS 245

Query: 545 IKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
              +           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTPL
Sbjct: 246 DYHVEMQQSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPL 305

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
             +IGF+  +         +    +Y   I+RS N +L I+ND+LD SK+E+GK+ L   
Sbjct: 306 NGVIGFTRQMLKTSL----SDNQKDYLQTIERSANNLLTIINDILDFSKLEAGKLLLENL 361

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFT 719
           P    +++ E +SL+   A+EK + I       IP  ++ D   ++Q+  N++ N+I FT
Sbjct: 362 PFDFQDSLDEVVSLLAPSAHEKGLEITLKIDPRIPSGLIGDPLRIQQVLNNLVGNSIKFT 421

Query: 720 PSGGQIIISTTH----TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
             G  I IS           +V   VRDTG+G++  +  +  + F Q   S   R  GTG
Sbjct: 422 EKG-NIDISIELKHLNDDFIDVQFVVRDTGIGISERQQAQLFQAFSQADASISRRYGGTG 480

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           LGL + + +V    G+  + S   +G+       ++ T  P
Sbjct: 481 LGLVITQKLVSQMGGEIGLSSRLHQGSTFWFTMRMHPTELP 521


>gi|303248258|ref|ZP_07334521.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio
           fructosovorans JJ]
 gi|302490396|gb|EFL50307.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio
           fructosovorans JJ]
          Length = 666

 Score =  296 bits (758), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 93/500 (18%), Positives = 184/500 (36%), Gaps = 27/500 (5%)

Query: 323 PETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
              +   P+    V + G + + N   L                L   L       +  I
Sbjct: 26  ERILQFAPVSIMTVDAAGGILFVNDWHLANFAMGKR---GREFFLGRKLQELPGIVSAGI 82

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
              +        I     ++T + +   S           +          I  +     
Sbjct: 83  VEDIRAVLAGKPIHLEG-VYTDECSGGQSAYQNIRGIPIFD-AGAVTGAIFIREDVTKLV 140

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
           + +  +        ++L AT D I + + +G IL  N   ++  G+P + ++      F+
Sbjct: 141 MAQHLLTENQAIFKALLNATHDSIILSDLDGYILVLNEEAARRRGHPADALVGTSLYKFM 200

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL--TMH 559
             +       +L E        + E+      +E++   + +            +     
Sbjct: 201 AGSLAEERRQHLKEAAEKGTLVSYEE-----RQEDRYYLVSLCPIADDHGRVIFMASYSR 255

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           DI+  K+ + +L   +++A   S  KS FL  ++HE+RTPL  I+G +++    + G   
Sbjct: 256 DITTLKETEAQLRRERELAFSASQAKSQFLGNITHELRTPLNGIMGATQL---AQQGGGE 312

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
                E  + +  SG  +L IVN++L+++ I++  +        + E +        + A
Sbjct: 313 EEEQAELWDIVADSGQRLLAIVNNVLELADIDAAAIEPVLSSCDVRELMKNLARSYSVRA 372

Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738
             K I         IPR ++ D+  ++QI  N+  NA+  T  G  I I     +   + 
Sbjct: 373 KVKDIDFVARIDPRIPRRLVGDVFRLRQILSNLADNALKCTQKG-CIDIRAKLITTSRLP 431

Query: 739 LR---------VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
                      VRDTG+G+     ++  + F    +    R  G GLGL +A+ +V+   
Sbjct: 432 FSPNYRNLLFMVRDTGIGIAKNLQDRIFEDFELAEHYLTKRVSGAGLGLSIARHLVEMLG 491

Query: 790 GKFYIFSTPAKGTLIEIIFP 809
           G+ ++ S P +G+      P
Sbjct: 492 GRIWVKSAPGRGSTFYFTIP 511



 Score = 45.0 bits (105), Expect = 0.048,   Method: Composition-based stats.
 Identities = 26/249 (10%), Positives = 62/249 (24%), Gaps = 16/249 (6%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN-HIGDLLKRQNTWYGKTT 148
           D  GY+  ++EE  +  G+ A  ++G  L         +    H+ +  ++      +  
Sbjct: 168 DLDGYILVLNEEAARRRGHPADALVGTSLYKFMAGSLAEERRQHLKEAAEKGTLVSYEE- 226

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                         ++  PI   +        +          +  A  +R  +      
Sbjct: 227 ------RQEDRYYLVSLCPIADDHGRVIFMASY--SRDITTLKETEAQLRRERELAFSAS 278

Query: 209 EIKKG------HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
           + K        H         + + Q        + + + L +  A     L      +L
Sbjct: 279 QAKSQFLGNITHELRTPLNGIMGATQLAQQGGGEEEEQAELWDIVADSGQRLLAIVNNVL 338

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
              +      E   +    +   K    +    +K        R  P +           
Sbjct: 339 ELADIDAAAIEPVLSSCDVRELMKNLARSYSVRAKVKDIDFVARIDPRIPRRLVGDVFRL 398

Query: 323 PETVDKCPI 331
            + +     
Sbjct: 399 RQILSNLAD 407


>gi|226947567|ref|YP_002802658.1| sensory box histidine kinase [Clostridium botulinum A2 str. Kyoto]
 gi|226842367|gb|ACO85033.1| sensory box histidine kinase [Clostridium botulinum A2 str. Kyoto]
          Length = 615

 Score =  296 bits (758), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 89/397 (22%), Positives = 172/397 (43%), Gaps = 11/397 (2%)

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
           +  +   N+  N ++ +++  R  ++ +         ++  + D I +  R G I+  N 
Sbjct: 192 RQKEEEVNILANKLDQKEMQKRCMEQLLIKNENCYNLLIRNSKDAILVH-RYGKIIFANE 250

Query: 480 AVSKLFGYPVED-ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
            + ++ GY  E           + ++  + + + L  +        +         +EK 
Sbjct: 251 RLKQMLGYRKEYNFEDIDIKSLIPKDEYNTVKNKLENLY-YGSENVVNFQHNVINNKEKT 309

Query: 539 LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK------SDFLARV 592
           +                  +HD++   Q +      KK  E  +  +      ++FL+ +
Sbjct: 310 IQNTSTYVIYDGMPTIFSILHDVTSKIQVEKLEQDVKKNIELLNESREYNKLITEFLSNI 369

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHE++TPL  I    + +       +   +  +Y   I ++   ++ ++N+LLD +K++S
Sbjct: 370 SHELKTPLNVIFTAVQ-LLGFYEKDVDYEKQDKYLKLIKQNCYRLMKLINNLLDTTKLDS 428

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712
           G + L+    ++   + E    V  YA  K I I          I  D   +++I LN+L
Sbjct: 429 GYLKLNLVNYNIVNLIEEITLSVTSYAESKGINIIFDTNVEEKIIAVDTDKIERIILNLL 488

Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           SN+I FT +GG I ++      E V + V+DTGVG+ + +LE   + F Q+  + +   E
Sbjct: 489 SNSIKFTNAGGNIFVNVK-DCGENVYVHVKDTGVGIPSDKLESIFERFFQVDKTLKKNKE 547

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GTG+GL L K+ V+ + G   I S   +GT   I  P
Sbjct: 548 GTGIGLHLVKSFVEMHNGTVTIKSELGQGTEFIIKLP 584


>gi|332522355|ref|ZP_08398607.1| PAS domain S-box protein [Streptococcus porcinus str. Jelinkova
           176]
 gi|332313619|gb|EGJ26604.1| PAS domain S-box protein [Streptococcus porcinus str. Jelinkova
           176]
          Length = 452

 Score =  296 bits (758), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 86/378 (22%), Positives = 162/378 (42%), Gaps = 35/378 (9%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           R+    +  E  +L SIL   SDG+   +R G I+  N    K      E+ L K  T  
Sbjct: 83  RLTHENLAQEKNRLASILAYMSDGVLATDRTGQIMMINETAQKQMNISREEALTKNITDL 142

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SL 556
           L   +P      +++        T+ +      +  + ++LR+        S +     +
Sbjct: 143 LGSESPYTYRELVSQT----PIVTINR----RDETGEFITLRLRFALNRRESGFISGLVV 194

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            +HD +E ++E+ +                 F++ VSHE+RTPLT++  + E +     G
Sbjct: 195 VLHDTTEQEKEERERRL--------------FVSNVSHELRTPLTSVKSYLEAL---DEG 237

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV- 675
            L       +        N ++ +++DLL++S+I++    L  E  +    ++  ++   
Sbjct: 238 ALKEDIAPSFIKVSLDETNRMMRMISDLLNLSRIDNQVTALAVEMTNFTAFMTSILNRFD 297

Query: 676 ----QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
               Q     K   I   +      +  D   + Q+  NIL+NAI ++P GG+I +    
Sbjct: 298 LVRNQNTVAGKTYEIIRDYPIKSIWLEIDNDKMTQVIENILNNAIKYSPDGGKIRVKMKT 357

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
           T + ++I+ + D G+G+   +L      F ++  ++     GTGLGL +AK +V  + G 
Sbjct: 358 TDS-QLIISISDQGLGIPKKDLPLIFDRFYRVDKARSRAQGGTGLGLAIAKEIVKQHKGF 416

Query: 792 FYIFSTPAKGTLIEIIFP 809
            +  S   KG+   I+ P
Sbjct: 417 IWAKSDYGKGSTFTIVLP 434


>gi|306843516|ref|ZP_07476117.1| histidine kinase [Brucella sp. BO1]
 gi|306276207|gb|EFM57907.1| histidine kinase [Brucella sp. BO1]
          Length = 859

 Score =  296 bits (758), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 130/724 (17%), Positives = 262/724 (36%), Gaps = 49/724 (6%)

Query: 110 AFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL--WPIEGTNLYVPIDLAALP 167
              ++G                  G  L+ Q+    +  +     +     + ++     
Sbjct: 150 RADVVGQLPDACGAPQDRPAFLAFGRWLRPQSVTALERAISTLREQARAFDLTVETVNGS 209

Query: 168 IYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ 227
           +   +   SG  GF +    +     +A    L+ +   L +  +    +          
Sbjct: 210 LLDVHGRTSG--GFAVA-CFQSLQGVQAERASLEAQNRELADRIELMRRLLDRIEQPAWL 266

Query: 228 QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287
           +     +   N   +           + +E   L  ++     E++ F    + +     
Sbjct: 267 RDGNGRIEWVNLAYA-HAVDMANASQVISEGRELFGAQARQRLERDRFAEPVVQEQLTAV 325

Query: 288 YFGTLQ--------NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG 339
             G  +          S             ++            ET+D+      ++   
Sbjct: 326 VHGDRRVFDVIDVSAESGSVGLGFDLTEVQAVRDELSRTLKSHAETLDQLSTAVAIFDPE 385

Query: 340 -NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398
             L + N +F+ L     V  +E     + + D  +       +P      D    A  A
Sbjct: 386 MKLQFFNQAFVKLWGL-DVAWLETRPSNTLIFDRLRAEGKLPEQPEWRKWKDSLLSAYRA 444

Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI- 457
                    E    M  +P  +  +   N    G      +    K ++E     L  + 
Sbjct: 445 V--------EPEEHMWHLPDTRTMRVVANPHPQGGVTWFFENMTEKFELEGRYNTLIKVQ 496

Query: 458 ---LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYL 513
              L+  ++ +A+   +G +  +N + + L+  P E +      ++  +       +   
Sbjct: 497 GETLDHLAEAVAVFGSDGRLRLSNPSFAALWSLPSEMVREGTHISIIAKLCNQRGGDGLW 556

Query: 514 TEILSLDLRQTLEKITL---GSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570
            + +S       ++          +  +LS  ++           LT  D+++  + +  
Sbjct: 557 EDFVSTVTGFLDQRDGRMGQVELSDGAILSFAVVPLP---KGQTMLTFIDVTDTVRVERA 613

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           L    +  E     K+DF+  VS+E+R+PLT IIGF+E+++   FG L N R +EY ++I
Sbjct: 614 LKEKNEALELADQIKNDFVQHVSYELRSPLTNIIGFTELLQTPAFGSL-NERQLEYLDHI 672

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
             S +++L IVND+LD++ +++G M L    VS+ EA+S A S V     +  I +    
Sbjct: 673 STSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEAISAAASRVSERLRDHNIGLDVDI 732

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
           A+++    AD   V+Q+  N+LSNA+++ P G  I++        +V+  V D G GM +
Sbjct: 733 ADDVDMFKADANRVRQVLFNLLSNAVNYAPEGSNIVLQVA-RDGADVVFAVHDDGHGMPS 791

Query: 751 YELEKAMKPFGQIPN-----SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
             L+   K F   PN        +          + K+ V+ + G+  I +   +GT + 
Sbjct: 792 EVLDTVFKRFQSYPNGGRRRGAGLGLA-------IVKSFVELHGGRVEIDTGEERGTTVI 844

Query: 806 IIFP 809
             FP
Sbjct: 845 CRFP 848


>gi|253687500|ref|YP_003016690.1| histidine kinase [Pectobacterium carotovorum subsp. carotovorum
           PC1]
 gi|251754078|gb|ACT12154.1| histidine kinase [Pectobacterium carotovorum subsp. carotovorum
           PC1]
          Length = 951

 Score =  296 bits (758), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 93/370 (25%), Positives = 152/370 (41%), Gaps = 29/370 (7%)

Query: 446 KMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           ++E        I+ +   GI I+   +G  + +N            +   +     +   
Sbjct: 350 QLEENEQFNRKIVASAPVGICILRINDGTNILSNELAHNYLNLLTHEDRLR--ITRIICE 407

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564
             S     +                   T     L +  +  +    +     + D+S  
Sbjct: 408 QQSKFVDVM-------------------TSRNHHLQISFVHSRYRNENVAICVLLDVSAR 448

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
            + +  L      AE+ S  KS FLA VSHE+RTPL  IIG  ++++ +      N    
Sbjct: 449 VKMEESLQEMANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKSLPQDAN---- 504

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
                ++ S +L+L I++D+LD SKIES ++ +     +  E +S   S       +KR+
Sbjct: 505 RLVAAMNNSSSLLLKIISDILDFSKIESEQLKIEPCEFAPHEVISHITSNYLPLVVKKRL 564

Query: 685 LIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
            +       +P  +  D   ++Q+  N+LSNAI FT +G  II          +   VRD
Sbjct: 565 TLYCFIDPKVPVSLFGDPVRLQQVLSNLLSNAIKFTDTG-CIIFEVGCRD-GYLEFVVRD 622

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TGVG+   E  K   PF Q  +  Q   +GTGLGL + + +V+   G   I S P  G+L
Sbjct: 623 TGVGIQPREAVKLFDPFFQAGSGVQRHFQGTGLGLAICEKLVNLMDGDITIESEPGLGSL 682

Query: 804 IEIIFPLYDT 813
             +  PLY  
Sbjct: 683 FGVRIPLYKA 692


>gi|153833234|ref|ZP_01985901.1| signal transduction histidine kinase [Vibrio harveyi HY01]
 gi|148870505|gb|EDL69420.1| signal transduction histidine kinase [Vibrio harveyi HY01]
          Length = 1200

 Score =  296 bits (758), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 89/391 (22%), Positives = 163/391 (41%), Gaps = 18/391 (4%)

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQ-LCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
           + G     +  +  + ++  +  + L S+L+   + I I +     +  N+    +    
Sbjct: 520 RTGHLTRTIKRKEYETQIRQKQNKWLSSVLDQLPNKILISDENNKQILANKPFINML--- 576

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
                R      +       +     E +  D   T E        +   +  + ++   
Sbjct: 577 ----SRCNVDKGITDQEREQVLDLTRECVRSDSEST-ETSLCSLGDKHYRVRQQTLLHPE 631

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
             +        DISE KQ++  L  +   A +    +  FLA VSHE+RTP+ A++G  E
Sbjct: 632 EGTQYRMTVFDDISELKQKETALKASNLKAMQAIEAREHFLAVVSHELRTPIAAMMGLME 691

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
           +++      L      E      +S   +   VND+LD SKI++ ++ L     ++ + +
Sbjct: 692 LLEQD----LERKESKELLKSAMQSAERLQLQVNDILDFSKIDANQLQLDVHKGNVYQEL 747

Query: 669 SEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIII 727
              +   +     K +    ++       ++ D   V QI  N+LSNA+ FT  G  +I+
Sbjct: 748 GATLRSFEKIIERKSLAFELNWTPTPHALVVLDWLRVSQIINNLLSNAVKFTEEG-NVIV 806

Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
           S   +   ++  +V+DTG GM + +L    +PF Q   S   R  GTGLG+ + K++VD 
Sbjct: 807 SVHVSPT-QLEFKVQDTGCGMNSAQLATLFQPFVQGDKSTSRRFGGTGLGMSIVKSLVDI 865

Query: 788 NMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
             G   + S   +GT I +  P+   S P D
Sbjct: 866 MEGTIEVDSQTEQGTTITVRLPMI--SQPLD 894


>gi|309790274|ref|ZP_07684842.1| integral membrane sensor hybrid histidine kinase [Oscillochloris
           trichoides DG6]
 gi|308227662|gb|EFO81322.1| integral membrane sensor hybrid histidine kinase [Oscillochloris
           trichoides DG6]
          Length = 908

 Score =  296 bits (758), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 82/247 (33%), Positives = 125/247 (50%), Gaps = 8/247 (3%)

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
             L  AK +AE  S  KS FLA +SHE+RTPL AIIG+SE++++       +   +    
Sbjct: 517 ASLEQAKHLAEGASRAKSAFLANMSHELRTPLNAIIGYSEMLQDD-LSESDHTALVPDIQ 575

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I  +G  +L ++ND+LDISKIE+GKM LH E  SL   V   I+ V   A      +  
Sbjct: 576 KIHHAGRHLLGLINDILDISKIEAGKMELHPEQFSLVSLVENVINTVDPLAASNHNRLVL 635

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH------TSNEEVILRVR 742
             A ++  + ADL  ++QI +N+LSNA  FT  G Q+ +            +  V+  + 
Sbjct: 636 ECAADLGMMAADLAKLRQILVNLLSNACKFTQHG-QVTLRVQRLRSETDPQSGTVVFEIA 694

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG+GM+  ++ +  +PF Q   S   +  G+GLGL ++        G   + S    G+
Sbjct: 695 DTGIGMSEEQIARIFQPFSQADTSMTRKYGGSGLGLAISHHFCQMMGGTIRVQSELGVGS 754

Query: 803 LIEIIFP 809
              +  P
Sbjct: 755 TFIVTLP 761


>gi|156742122|ref|YP_001432251.1| multi-sensor hybrid histidine kinase [Roseiflexus castenholzii DSM
           13941]
 gi|156233450|gb|ABU58233.1| multi-sensor hybrid histidine kinase [Roseiflexus castenholzii DSM
           13941]
          Length = 819

 Score =  296 bits (758), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 103/653 (15%), Positives = 222/653 (33%), Gaps = 45/653 (6%)

Query: 176 SGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR 235
           +G +G   +        P  +   L        ++ +  +    +   I         + 
Sbjct: 34  TGRQGLNRLR----QRIPDLILLDLQLPDISGLDLLRMIAQEGYDVPVILMTAHGSEAIA 89

Query: 236 MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN 295
           ++        Y        + +        E  L  +++  T NL Q  ++         
Sbjct: 90  VEAFRLGARNYLIKPFSETEAQAAIDRALRERRLKREKELLTRNLRQRVQELTVLYSIGK 149

Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYK 355
           S  S   L       + A            + + P    +Y              L    
Sbjct: 150 SVSSLLDLEELLVRIVEAGVYITRAEEGFLLLRDPNANELYLRAAKNLGEQRAQKLRMPI 209

Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
                         +   K      +K +             A L          + +  
Sbjct: 210 DDSLAGQVIRTGKPIRLDKAGAGAQLKVIT-------GFLVRAILQVPLMVGNQVIGVLA 262

Query: 416 IP--FEKANQFPENMPQNGIEPEDVDTRINKRKM----EIEVMQLCSILEATSDGIAIIN 469
           +     +      +        +     I   ++    +    +   + +  +D I  ++
Sbjct: 263 VDNQQSERTFSENDQYLLSALADYAAIAIENARLYQKVKQSEARYRDLFDNANDLIFTLD 322

Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
           R+  I S N+    + GY  +D++ +P    L ++  + +   L+++L  +     E   
Sbjct: 323 RQLNIRSINKVGPTITGYAGDDLIGRPLRTVLFEDAWAPVERLLSKVLRGETTPPFELQL 382

Query: 530 LGSTKEEKLLSLRIIIKKLPFSSCYS-LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
               +E  +L +   + +    +        D++E ++ + +L  ++K+     S     
Sbjct: 383 RRYDEETVVLEVSARLIQDGDRAEAIHCIARDLTERRRLEEQLIRSEKL-----SAIGQL 437

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
           +A V+HE+  PLT+I G+++++         +P   E   +I+        IV +LL  +
Sbjct: 438 VAGVAHEVNNPLTSISGYTQLMLRD---TSLSPGIREDLQHINTQAERAARIVQNLLMFA 494

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIA 708
           +    +       V +++ +   ++L         I I T FA N+P+ +AD   ++Q+ 
Sbjct: 495 R----EHKPQRTLVDINQVLQSTLTLRAYQLRVDNITIVTDFAPNLPQTVADPHQLQQVF 550

Query: 709 LNILSNAIHF-TPSGG--QIIISTTHT--------SNEEVILRVRDTGVGMTNYELEKAM 757
           LN+++NA    T  GG   + + T+              + + V DTGVG++   L +  
Sbjct: 551 LNLINNAHQAMTERGGKGTLTLRTSVEPCVGEGNREERCIRIAVSDTGVGISPRNLSRIF 610

Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            PF          G+GTGLGL +   ++  + G+ +  S    GT + +  PL
Sbjct: 611 DPFFTTKP----VGQGTGLGLSICFGIIQEHHGRLWAESEVGVGTTMYVELPL 659



 Score = 48.1 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/248 (12%), Positives = 69/248 (27%), Gaps = 14/248 (5%)

Query: 30  IDNGFETEKSKKENP---CHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFT 86
           +DN  ++E++  EN         + +    +N          ++    +FD         
Sbjct: 263 VDNQ-QSERTFSENDQYLLSALADYAAIAIENARLYQKVKQSEARYRDLFDNAND---LI 318

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK 146
           + +D    ++ I++  P   G     +IG  L  V       P   +   + R  T    
Sbjct: 319 FTLDRQLNIRSINKVGPTITGYAGDDLIGRPLRTVLFEDAWAPVERLLSKVLRGETTPPF 378

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                       V ++++A  I   +R         I               R + K S 
Sbjct: 379 ELQLRRYDEETVV-LEVSARLIQDGDRA---EAIHCIARDLTERRRLEEQLIRSE-KLSA 433

Query: 207 LHEIKK--GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
           + ++     H             Q       +   +    ++   + +        LL  
Sbjct: 434 IGQLVAGVAHEVNNPLTSISGYTQLMLRDTSLSPGIREDLQHINTQAERAARIVQNLLMF 493

Query: 265 EESSLPEQ 272
                P++
Sbjct: 494 AREHKPQR 501


>gi|27380788|ref|NP_772317.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
           USDA 110]
 gi|27353953|dbj|BAC50942.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
           USDA 110]
          Length = 941

 Score =  296 bits (758), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 88/641 (13%), Positives = 197/641 (30%), Gaps = 45/641 (7%)

Query: 184 VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL 243
             +    +D   +  R       +  +     S+          + P   +     V  +
Sbjct: 189 AWIVTAWHDLLPVLLRDGHYMPAMIGVVSFVWSLSFAALVSLWFRRPHSVID----VWLM 244

Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303
               A   D+  +    +   +      +                          S    
Sbjct: 245 VVMCAWLFDIALSAIVNVARFDLGFYVGRLYGLCAATFVLAVLLVENVRLQAQTASMVGA 304

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEI 362
             R   +   Y  E E L    V+         S  G +   N +   +  Y + + +  
Sbjct: 305 LKRRSDAERDYHAERERLFTAVVESSNDAIITKSLDGTITTWNSAAERVFGYSADEAVGR 364

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
           +  +      P    ++  + +   R +   I     +  +  + +    +        +
Sbjct: 365 SIDI----IMPDDQRDDVAENLARTR-NGEVIDQQETV-RLHKSGQPI-DVVLSQVPLRS 417

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
              + +  + +  +  + +  +  +  E+ +   I E + D I + +  G  +  + +V 
Sbjct: 418 TEGKIIGASKVARDVTERKRAEMALNREIEERQRIFETSQDLILVTDGFGNFIQVSPSVK 477

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
            + G+  +D++      F+  +        +       ++++          +   ++L 
Sbjct: 478 DILGFSPDDMVGHSAIEFIHPDDLEKTRSEMRAARRGAVKRSF--EARYYHYDGHEVTLN 535

Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
            +         +     D++E +  + +L   +K+              V+H+    LT 
Sbjct: 536 WMGTWSEPVRRHFFIGRDLTEKQAAEAQLRQVQKMD-----SIGQLTGGVAHDFNNVLTV 590

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           I G   ++ +        P        ID +      +   LL  ++    K  L    +
Sbjct: 591 ITGTIGILAD---AVADRPELAAITKLIDDAAERGAQLTKHLLAFAR----KQPLQPREI 643

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
            ++    EA  L+      ++I I      +    L D   +    LN+  NA    P G
Sbjct: 644 DVNALTLEAAKLLHPTL-GEQITIMPQLTEDAWPTLVDPGQLSTAILNLALNARDAMPDG 702

Query: 723 GQIIISTT--------------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
           G +++ T                 +   V++ V DTG G+    +E+   PF        
Sbjct: 703 GTLVLETRNVFLDDGYASMNPDIVAGNYVMIAVSDTGTGIPADLIERVFDPFFTTK---- 758

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             G+GTGLGL +    V  + G   I+S    GT ++I  P
Sbjct: 759 EVGKGTGLGLSMVFGFVKQSGGHIKIYSEEGHGTSVKIYLP 799



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/390 (9%), Positives = 101/390 (25%), Gaps = 44/390 (11%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH--IDPNNHIGDLLKRQNTWYGKTTL 149
            G +   +    +  G  A + +G  + D+        D   ++      +     +T  
Sbjct: 340 DGTITTWNSAAERVFGYSADEAVGRSI-DIIMPDDQRDDVAENLARTRNGEVIDQQETVR 398

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
               G    + + L+ +P+ S   +  G     +               R  ++   + E
Sbjct: 399 LHKSG--QPIDVVLSQVPLRSTEGKIIGASK--VARDVTERKRAEMALNREIEERQRIFE 454

Query: 210 IKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDD-VLKTEKYPLLTSE 265
             +    V     +                 + V      + H DD      +       
Sbjct: 455 TSQDLILVTDGFGNFIQVSPSVKDILGFSPDDMVGHSAIEFIHPDDLEKTRSEMRAARRG 514

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
                 +  ++  + ++ T        +   +  F         +  A   + + +    
Sbjct: 515 AVKRSFEARYYHYDGHEVTLNWMGTWSEPVRRHFFIGRDLTEKQAAEAQLRQVQKMDS-- 572

Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKY-----KSVDDIEIAGGLSTLLDAPKLSDNNA 380
           + +                N    ++T        +V D      ++ L+D         
Sbjct: 573 IGQLTGGVAHD-------FNNVLTVITGTIGILADAVADRPELAAITKLIDDAAERGAQL 625

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLA------MTFIPFEKANQFPENMPQNGIE 434
            K ++ +   +        ++ +       L       +T +P    + +P  +    + 
Sbjct: 626 TKHLLAFARKQPLQPREIDVNALTLEAAKLLHPTLGEQITIMPQLTEDAWPTLVDPGQLS 685

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDG 464
              ++  +N R             +A  DG
Sbjct: 686 TAILNLALNAR-------------DAMPDG 702



 Score = 60.0 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/268 (9%), Positives = 59/268 (22%), Gaps = 14/268 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN-TWYGKT 147
            D  G   ++S  +   +G     M+G    +      ++         +R       + 
Sbjct: 463 TDGFGNFIQVSPSVKDILGFSPDDMVGHSAIEFIHPDDLEKTRSEMRAARRGAVKRSFEA 522

Query: 148 TLWPIEGTNLYV-PIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
             +  +G  + +  +   + P+          R F I           A  +++ K  S 
Sbjct: 523 RYYHYDGHEVTLNWMGTWSEPVR---------RHFFIGRDLTEKQAAEAQLRQVQKMDSI 573

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
                            I                 +              +    L +  
Sbjct: 574 GQLTGGVAHDFNNVLTVITGTIGILADAVADRPELAAITKLIDDAAERGAQLTKHLLAFA 633

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
              P Q     +N       +               L+    P+L         +    +
Sbjct: 634 RKQPLQPREIDVNALTLEAAKLLHPTLGEQITIMPQLTEDAWPTLVDPGQLSTAILNLAL 693

Query: 327 ---DKCPIPFFVYSHGNLFYANPSFLLL 351
              D  P    +       + +  +  +
Sbjct: 694 NARDAMPDGGTLVLETRNVFLDDGYASM 721


>gi|298248922|ref|ZP_06972726.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297546926|gb|EFH80793.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 485

 Score =  296 bits (758), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 88/504 (17%), Positives = 182/504 (36%), Gaps = 28/504 (5%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSVDDIEIAGGLS 367
           P                +D  P   +      L  YAN  +L                + 
Sbjct: 2   PKTKQTRRVTPASCDTLIDSIPQLVWTARPDGLHDYANRRWLDYVGLTFEQVHR---DIW 58

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
             L      D    +    Y  D   +         Q                 N+  + 
Sbjct: 59  AYLPFLHPEDQEGNRMHWEYALDTGTL-FEYEQRIKQCQTGEYRWFLTRAEPLRNEADQI 117

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
           +   G   +  + +  +  +     +  +++++       I     I+  N    ++ GY
Sbjct: 118 VKWVGTSTDIEEQKRIEDVLREGQERADALMQS-KIIGINIIEGEQIVDANDTFLRMTGY 176

Query: 488 PVEDIL--RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
             ED+   R  +         +     L E+ +       EK  +       L+ +  ++
Sbjct: 177 TREDLRAGRLNWRNMTPPEYMARTVQSLQELATQQSMTPYEKEYVCQDGSRLLVLVCGVV 236

Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
            +       +  + D S  K+ +                K DF+   SHE+RTPLT +  
Sbjct: 237 FQHHPHQAINFVL-DNSARKELEQH--------------KDDFINMASHELRTPLTVVKM 281

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
            ++ + ++R             + ++R    +  ++ +LLD+S++++G++    E V LD
Sbjct: 282 QTQ-LVHKRLEKHSQHEAATTLSRVERPIEQLERLIGELLDVSQMQAGRLKYVRERVDLD 340

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725
             + EA   +Q  +    I++R S   +   ++ D   ++Q+  N+LSNAI ++P    +
Sbjct: 341 ALLREATDTMQHMSPSHTIVVRGSIQTS---VIGDRDRLEQMLSNLLSNAIKYSPDAKTV 397

Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
            +  + + +  V +RV D G+G+   + +K  + F +    +Q    G G+GL +   +V
Sbjct: 398 EVELSTSESA-VTIRVIDHGLGIPREQRDKIFERFYRDAGLRQHAVPGLGMGLYIVAEIV 456

Query: 786 DANMGKFYIFSTPAKGTLIEIIFP 809
             + G   + S   KG+   + FP
Sbjct: 457 KHHGGTITVDSDVGKGSTFTVTFP 480



 Score = 46.2 bits (108), Expect = 0.021,   Method: Composition-based stats.
 Identities = 11/126 (8%), Positives = 30/126 (23%), Gaps = 6/126 (4%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV--SDILHIDPNNHIGD-LLKRQN 141
             W     G     +      +G    ++       +        + N    +  L    
Sbjct: 25  LVWTARPDGLHDYANRRWLDYVGLTFEQVHRDIWAYLPFLHPEDQEGNRMHWEYALDTGT 84

Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
            +  +  +   + T  Y      A P+ +   +    +  G             + +   
Sbjct: 85  LFEYEQRIKQCQ-TGEYRWFLTRAEPLRNEADQIV--KWVGTSTDIEEQKRIEDVLREGQ 141

Query: 202 KKFSHL 207
           ++   L
Sbjct: 142 ERADAL 147


>gi|241763957|ref|ZP_04761999.1| PAS/PAC sensor signal transduction histidine kinase [Acidovorax
           delafieldii 2AN]
 gi|241366780|gb|EER61221.1| PAS/PAC sensor signal transduction histidine kinase [Acidovorax
           delafieldii 2AN]
          Length = 460

 Score =  296 bits (758), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 83/419 (19%), Positives = 164/419 (39%), Gaps = 41/419 (9%)

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC---SILEAT 461
           W     L         A      M     +      R ++ +++    +L    + L+AT
Sbjct: 45  WRGSRVLLWLRSGDLSAAPSIRGMWGEAADRARRLLRQSQMQIQDSDGRLQEILAALQAT 104

Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
            +G+ +++ +G I   N+  +  FG+  +  + +     +     S              
Sbjct: 105 PNGVVLLDGQGHIEWCNQIAASQFGFDAQRDVMQSIGNLVRDPDFSAYYAA--------- 155

Query: 522 RQTLEKITLGSTKEEKL-LSLRIIIKKLPFSSCYSLTM-HDISEWKQEKNKLSHAKKIAE 579
            Q      +   ++      +RI +   P+ +  +L +  D++                E
Sbjct: 156 -QDFTHDVVLQGRDSTPSRPVRISVHLHPYGNGRTLLLSRDVT--------------ALE 200

Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639
           +  + + DF+A VSHEIRTPLT + GF E ++     PL       Y   + +    +  
Sbjct: 201 QADAMRRDFVANVSHEIRTPLTVLTGFVETLQT---LPLDADERSRYLAMMAQQAARMQS 257

Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSE------AISLVQLYANEKRILIRTSFANN 693
           +V DLL +S++E   +    E   +   +        A+S +     ++  +++      
Sbjct: 258 VVQDLLTLSRLEGSPLPGMSEWTPVLALMHRCEEEGRALSALLTQNQQRHHVLQFPSVQE 317

Query: 694 I---PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
           +     I      ++ +  N++SNA+ +TP+ G I +     ++      V DTG G+  
Sbjct: 318 LRAEGDIAGVPSELQSVLSNLISNAVRYTPASGTITVQWRRAADGSATFSVSDTGPGIAP 377

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             L +  + F ++  S+     GTGLGL + K +V  +     I S P KG++  + FP
Sbjct: 378 EHLPRLTERFYRVDRSRSRETGGTGLGLAIVKHVVQRHGAVLDISSVPGKGSVFSVTFP 436


>gi|56750891|ref|YP_171592.1| two-component sensor kinase [Synechococcus elongatus PCC 6301]
 gi|81299455|ref|YP_399663.1| GAF sensor hybrid histidine kinase [Synechococcus elongatus PCC
           7942]
 gi|8953946|gb|AAF82192.1|AF258464_1 circadian input kinase [Synechococcus elongatus PCC 7942]
 gi|56685850|dbj|BAD79072.1| two-component sensor kinase [Synechococcus elongatus PCC 6301]
 gi|81168336|gb|ABB56676.1| GAF sensor hybrid histidine kinase [Synechococcus elongatus PCC
           7942]
          Length = 754

 Score =  296 bits (758), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 86/257 (33%), Positives = 138/257 (53%), Gaps = 7/257 (2%)

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
            +L  A  +A+  ++ K +FLA +SHE+RTPLT +IG S  +    FGPL   R  EY  
Sbjct: 368 QELIDALALAQAANAAKGEFLATMSHELRTPLTCVIGMSSTLLRWAFGPLT-ERQREYIK 426

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN--EKRILI 686
            I  SG  +L+++ND+LD+S+IE+GK  L   P SL    ++ ++ +Q  A   E ++++
Sbjct: 427 AIHDSGEHLLELINDILDLSQIEAGKAALQVRPFSLSRLATQTLNTLQEKARLGEIQLML 486

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
                N +    AD + ++QI +N+LSNA+ FT   G + +       +  I +V DTG+
Sbjct: 487 DLQLNNRVDVFRADPKRLRQILINLLSNAVKFTEPQGTVFLRV-WREGDRAIFQVSDTGI 545

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+   E  +  + F Q+  S + +  GTGLGL L K +V+ + G   I ST  +G+   +
Sbjct: 546 GIPESEQAQLFQKFQQLDTSIRRQYGGTGLGLALTKQLVELHGGHIQIESTVGQGSTFTV 605

Query: 807 IFP---LYDTSHPHDCI 820
             P   L +   P   I
Sbjct: 606 WIPEQTLIEPVEPRPSI 622


>gi|330809799|ref|YP_004354261.1| sensor/response regulator hybrid [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327377907|gb|AEA69257.1| putative sensor/response regulator hybrid [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 770

 Score =  296 bits (758), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 121/641 (18%), Positives = 235/641 (36%), Gaps = 63/641 (9%)

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
                      K    I           +   ++      A +D          + +  +
Sbjct: 6   ARRWADLPLRGKALVVISLPLVVLLLSLVLIYITERQTARAEEDVRRVLLVQGDIQTVHT 65

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH--PSLSAYFDEGENLTPET 325
            L   E   ++     T+++ F      +         R       +   +  + +TP  
Sbjct: 66  LLA--EAAASVRGYLLTRREDFLPSYEQATPLIHAALQRLDHNIRDARMREHLKTITPLI 123

Query: 326 VDKCPIPFFVYSHGN---------LFYANPSFLLLTKYK-SVDDIEIAGGLSTLLDAPKL 375
            DK         +G          +   N   L + + + S   I     L+    A   
Sbjct: 124 ADKL-DGLLALRNGKRDDPEAITAILIENKQVLDVLREQISAMRIREDALLADRSAAASA 182

Query: 376 SDNNAIKPVMLYRSDRTCIAASARL--------HTIQWNRENSLAMTFIPFEKANQFPEN 427
           +    +   +L        A  A L           Q            P        + 
Sbjct: 183 TRMRLLFATLLAAVCGLLGAIVAVLFLSKGIVARVQQVQGNAQRLALGQPLLPQPPEQDE 242

Query: 428 MPQNGIEPEDVDTRINKRK--MEIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKL 484
           + Q G    +    + +R+  +     +L  I++   D GI  ++ +G + + N    ++
Sbjct: 243 IGQLGTRLVEAGQLLAERERALRDNEERLRLIIDGVKDYGIFALDAQGYVTTWNAGAERI 302

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
            GY  ++IL + F++F               +          +      K+       ++
Sbjct: 303 KGYTEQEILGRHFSLFYLAEECPAHPEM--ALREATRDGHYMEEGWRCRKDGSRFWASVV 360

Query: 545 IKKLPFS----SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
           I            +S    DI++ +  +  L  A++ AE  S  KS+FL+R+SHE+RTPL
Sbjct: 361 ITAQYDGTGALRGFSKITRDITDRRAAEIALRTAREEAESASRAKSEFLSRMSHELRTPL 420

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
            AI+GF++++                 ++I R+G  +L ++N++LDI++IE+G++ L+ E
Sbjct: 421 NAILGFAQLL-----DMDSTAGQRPQVSHILRAGQHLLALINEVLDIARIEAGRLPLNIE 475

Query: 661 PVSLDEAVSEAISLVQLYANEKRILI-RTSFANNIPRILADLRSVKQIALNILSNAIHFT 719
           P++L   + EA++LV   A +  I +       +   +LAD + + Q+ LN+LSNAI + 
Sbjct: 476 PIALSTVLHEALTLVSPMAADAGIHLAELPALPDDSGVLADRQRLVQVLLNLLSNAIKYN 535

Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT----- 774
             GG++ I  +  ++ +V + V DTG G+   +L++  KPF ++      + EGT     
Sbjct: 536 RPGGEVRIEVSVQAH-QVSIAVNDTGHGIAPEQLDQLFKPFERL--GADPQVEGTGLGLS 592

Query: 775 ------GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
                            +   G   + S P  G    +  P
Sbjct: 593 LSKSLL-----------EMMQGNLQVHSEPGHGCCFTLQLP 622



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/368 (8%), Positives = 74/368 (20%), Gaps = 23/368 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + +DA GY+   +    +  G    +++G              +  +      ++  Y 
Sbjct: 283 IFALDAQGYVTTWNAGAERIKGYTEQEILGRHFSLFYLAEECPAHPEMALREATRDGHYM 342

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +   W            +     Y       GF    I              +   ++  
Sbjct: 343 EEG-WRCRKDGSRFWASVVITAQYDGTGALRGFSK--ITRDITDRRAAEIALRTAREEAE 399

Query: 206 HLHEIKKGHSSVEKEKYD-----------IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254
                K    S    +             +    S        + +    ++       L
Sbjct: 400 SASRAKSEFLSRMSHELRTPLNAILGFAQLLDMDSTAGQRPQVSHILRAGQHLL----AL 455

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
             E   +   E   LP   +   ++   +        +  ++      L        S  
Sbjct: 456 INEVLDIARIEAGRLPLNIEPIALSTVLHEALTLVSPMAADAGIHLAELPALPDD--SGV 513

Query: 315 FDEGENLTPETVDKCPIPFFVYSHG---NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
             + + L    ++           G    +  +  +  +               L  L  
Sbjct: 514 LADRQRLVQVLLNLLSNAIKYNRPGGEVRIEVSVQAHQVSIAVNDTGHGIAPEQLDQLFK 573

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
             +    +            +          +Q + E      F       Q        
Sbjct: 574 PFERLGADPQVEGTGLGLSLSKSLLEMMQGNLQVHSEPGHGCCFTLQLPGTQVVGAHLPP 633

Query: 432 GIEPEDVD 439
                   
Sbjct: 634 IAALAVTR 641


>gi|288940451|ref|YP_003442691.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
 gi|288895823|gb|ADC61659.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
          Length = 1037

 Score =  296 bits (758), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 108/631 (17%), Positives = 210/631 (33%), Gaps = 24/631 (3%)

Query: 197 GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256
           G R     S L E +             +         R   +  +     A + D  + 
Sbjct: 267 GVRSTLTLSLLREGRLWGLIACHHLDRHWLNWERREIARWMAQDLATQIALAEEVDRRRY 326

Query: 257 EKYPLLTSEESSLPEQEDFHTINL-NQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
           E       E + L  ++     +L +        G +  +               ++   
Sbjct: 327 ESSLRDCRERTLLAMRQGKRLSDLIHGRELDDVLGAIGADGVALIRGDEVFT-GGVTPSA 385

Query: 316 DEGENLTPETVDKCP-IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
               ++      + P  P  +++   L         L +  +   +       ++     
Sbjct: 386 PHVRDIARALSAQNPNSPSQLFATDCLSAHLEQTAELAETAAGVALFPLDAGQSIKLIWF 445

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
             +                +AA  RL   +        +         +  E+  + G  
Sbjct: 446 RGEQLRQVTWGGNPDKSMSVAADGRLSPRRSFDAWREIVERHGRRWRPEELESARKLGAL 505

Query: 435 PEDVDTRINKRKMEIEVMQLCSI---------------LEATSDGIAIINREGIILSTNR 479
            +    ++ +  +     +L                  ++   D + I ++       N 
Sbjct: 506 IDIEWRKMAEEALRASEERLRQAAENALRLSKESFRLAVDHMPDALVIYDQTRRYSFLNA 565

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
              K  G P+   L +            V   +L    +     + E     +T    L+
Sbjct: 566 VSLKRAGRPMSAYLGRRDEEIHPPEVCDVYLPHLCRAYANRSVVSFECALELATSHYDLV 625

Query: 540 SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
              + + +           +DI+E K+ + KL+   +   +    K +FLA ++HE+R P
Sbjct: 626 VTYVPMLEHGEVYQVFGFYYDITERKRNEAKLAEQARQLREADWRKDEFLAMLAHELRNP 685

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  I    +++K  RF      +       IDR    +  +V+DLLD+S+I  G + L  
Sbjct: 686 LAPISNALQLLKQSRFAG----QEAWCLAVIDRQAAHLQRLVDDLLDVSRITRGVIELRP 741

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719
           EP+ + E +  A+   +     +R  +R        R++ DL  + Q+  N+L+NA  FT
Sbjct: 742 EPLDVTEIIDRAVETSRALIEARRHELRIRTPTEPIRLMGDLVRLTQVVSNLLANAAKFT 801

Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
             GG I I     +   V++RVRD G+G+    L +    F Q+         G G+GL 
Sbjct: 802 DEGGCIAIDVEREAT-TVLIRVRDNGLGIEPERLPQLFDLFYQVDRGIARTEGGLGIGLS 860

Query: 780 LAKAMVDANMGKFYIFS-TPAKGTLIEIIFP 809
           L K +V+ + G     S    +G  + +  P
Sbjct: 861 LVKRLVEMHGGSVEALSPGLGQGAELRVRLP 891


>gi|190572924|ref|YP_001970769.1| putative sensor histidine kinase/response regulator fusion protein
           [Stenotrophomonas maltophilia K279a]
 gi|190010846|emb|CAQ44455.1| putative sensor histidine kinase/response regulator fusion protein
           [Stenotrophomonas maltophilia K279a]
          Length = 1075

 Score =  296 bits (758), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 93/515 (18%), Positives = 181/515 (35%), Gaps = 25/515 (4%)

Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYK 355
                  L+  + P  +  + E +  +   +     P  V  +       P F  L+ + 
Sbjct: 198 RDRQTRLLAIAHAPQDARLWGEDDKDSQAALACLLDPGRVDDY-RQVLGVPVFQRLSLFD 256

Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
           +     +                 A     +                +  + +  L    
Sbjct: 257 TDGQRLLGDAADASDAGTSWKAGLAGLQFRMRSERGWLAVYHVSWRQVFQHPQGPLLGAI 316

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR-EGII 474
           +           + +          R N  ++        +IL+    G+ ++ R +G +
Sbjct: 317 VVALLLALGGTLLLRAYRRSVIEPLRSNHARLLESEAFSRTILDNAPIGLCLLRRTDGNV 376

Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
           L  N    +  G           +          +       L   L  T        T 
Sbjct: 377 LLDNTLARRWLGED-------HHSGGWHGPWRRSVLAAGGTTLGDGLAYT--------TP 421

Query: 535 EEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
           E + L +     +            D+S   + +  L  A++ A++ +  KS FLA +SH
Sbjct: 422 EGRHLLVTATPARYRGEPAVLCLFIDLSSQHEAEQVLQQARRAADQANRAKSQFLATMSH 481

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           EIRTPL  ++G  E++         + R  +Y   I RS + ++ +++D+LD+SK E+G+
Sbjct: 482 EIRTPLYGVLGTLELLGLTPL----DARQQDYLATIQRSSSTLMQLISDILDVSKAEAGQ 537

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILS 713
           ++L   P        +A+      A  K +        ++P ++  D   ++Q+  N++S
Sbjct: 538 LSLEPSPFDPVRLTEDALDSYAAAAANKGLRFYACIDADVPPVVCGDAARIRQVLNNLIS 597

Query: 714 NAIHFTPSGG-QIIISTTHTSNE-EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           NA+ FT SG   + +S         +  +V DTG+G+ +       +PF Q         
Sbjct: 598 NALKFTDSGRVVVRVSARWQEQRCWLQWQVADTGIGIASEHQAHLFEPFFQANPG-TDAM 656

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
            GTGLGL +   +V    G+  + S    G+   +
Sbjct: 657 RGTGLGLAICAHLVALMEGQLRVVSESGLGSSFSV 691


>gi|150017638|ref|YP_001309892.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           beijerinckii NCIMB 8052]
 gi|149904103|gb|ABR34936.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           beijerinckii NCIMB 8052]
          Length = 523

 Score =  296 bits (758), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 81/393 (20%), Positives = 157/393 (39%), Gaps = 26/393 (6%)

Query: 448 EIEVMQLCSILEATSDGIAIIN--REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           E    QL    E T D   +     E   +  N ++ +  GY +E     P   F+ +  
Sbjct: 111 EERYNQLIKTCEKTKDVFFVFEILPEFKFIYVNPSMQETLGYELEMYYIDP--HFVFEIV 168

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM----HDI 561
                + +   +  +   + +       K+   + +   +      +   +++     DI
Sbjct: 169 HPEDTNIMQSRVDKNTDFSKDFCLRFKHKDGHYVWIEDYLVPTYNENGDLVSVSGFSRDI 228

Query: 562 SEWKQEKNKLSHAKKIAE--------------KESSHKSDFLARVSHEIRTPLTAIIGFS 607
           +E K+ +  L    K+ E              K    + + L  +SHE++TPL  I   +
Sbjct: 229 TERKKLEKMLEEQNKLLEMDVTAEIKTNKIMEKTLKSQEELLVNISHELKTPLNVISATA 288

Query: 608 EVIKNQRFGPL---GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           ++++               I+Y   I  +   +  ++N+++D SKIE+G   L+   V++
Sbjct: 289 QLLEMYYMDDSIINKKDILIKYFKSIKLNTYRLSKLINNIVDTSKIEAGFFELNLLNVNI 348

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724
              V E +  V  +   K + I          I  D   +++I LN++SNA  F+   G+
Sbjct: 349 VNVVEEIVMSVTSFVKIKGLNIIFDTNTEEKIIACDPEKIERIMLNLISNATKFSNDNGE 408

Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
           I +      NE V + V+D G+G+   +++     F Q   S     EGTG+GL L K++
Sbjct: 409 IFVKVK-DMNEWVEISVKDNGIGIEEKKMDIIFDRFEQADKSLSRNAEGTGIGLSLVKSI 467

Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
              + G   + S   KG+   +  P    ++ +
Sbjct: 468 ALLHGGSINVESEYGKGSKFTVTLPAGAVANEN 500



 Score = 44.2 bits (103), Expect = 0.096,   Method: Composition-based stats.
 Identities = 14/117 (11%), Positives = 34/117 (29%), Gaps = 7/117 (5%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFK--MIGMRLCDVSDILHIDPNNHIGDLLKRQNT 142
           F + I        ++  + +T+G       +    + ++         N +   + +   
Sbjct: 129 FVFEILPEFKFIYVNPSMQETLGYELEMYYIDPHFVFEIVHPED---TNIMQSRVDKNTD 185

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199
           +     L        YV I+   +P Y+ N +     GF              + + 
Sbjct: 186 FSKDFCLRFKHKDGHYVWIEDYLVPTYNENGDLVSVSGF--SRDITERKKLEKMLEE 240


>gi|81300625|ref|YP_400833.1| periplasmic sensor hybrid histidine kinase [Synechococcus elongatus
           PCC 7942]
 gi|81169506|gb|ABB57846.1| periplasmic sensor hybrid histidine kinase [Synechococcus elongatus
           PCC 7942]
          Length = 977

 Score =  296 bits (758), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 91/434 (20%), Positives = 183/434 (42%), Gaps = 17/434 (3%)

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
              +A     L  S    I        +++                 +    +       
Sbjct: 284 DAKDASGQFFLRTSIADAIRQPGAFIRVRYLARPWTEGLQSTQPARQEQMLLVYYRP-WN 342

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
             +  R ++++      +L +I + +     ++   G+I++    +  +        L  
Sbjct: 343 WVIGIRQDEQEFAEPFRRLEAIQQRSLYIQLLL---GVIIAV---LGAIAARGWAAHLGM 396

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555
                              +I +       E   L        ++LR ++  L       
Sbjct: 397 RIEQLAHAADAMASGQLQQQIPTSGRD---ELTVLAQAFNRMAVTLRELLVSLEH----- 448

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
                 +  ++  ++L  A++ AE  +  KS FLA +SHE+RTPL AIIG+SE++  +  
Sbjct: 449 RVQERTAALRETNDRLEQAREQAEAANQAKSAFLANMSHELRTPLNAIIGYSEMMMEEAE 508

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
             +     +     I+ +G  +L+++N +LD+SKIE+G+M L+ E  SL E ++   S++
Sbjct: 509 DGIEVEELLPDFRKINNAGKHLLELINSILDLSKIEAGRMELYLESFSLPELINGVKSII 568

Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
           +    + +  +      +I  + AD+  ++Q  LN+LSNA  FT  G  I +       +
Sbjct: 569 KPLIEKNQNQLLVDCPADIGLMTADVTKLRQTLLNLLSNASKFTHQG-TIQLQVAAQ-GD 626

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
           +V+ +V D+G+GM+  ++++  + F Q  +S   +  GTGLGL +++  ++   GK  + 
Sbjct: 627 QVVFKVVDSGIGMSPEQIDRIFEAFAQADDSTTRKFGGTGLGLSISRHFIEMMGGKITVE 686

Query: 796 STPAKGTLIEIIFP 809
           S   +G+   I  P
Sbjct: 687 SVLGEGSTFTITLP 700


>gi|121725857|ref|ZP_01679157.1| sensor histidine kinase LuxQ [Vibrio cholerae V52]
 gi|121631622|gb|EAX63990.1| sensor histidine kinase LuxQ [Vibrio cholerae V52]
          Length = 857

 Score =  296 bits (758), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 83/377 (22%), Positives = 162/377 (42%), Gaps = 21/377 (5%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           R++  +  Q   +         + N  G ++  N +    F              FL + 
Sbjct: 350 RRLANKEKQFEDLFNFALSPTMLWNTSGRLIRMNPSAQIQFLREDAQ------NHFLFEI 403

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT-MHDISE 563
               +   +T+    D    +         + ++    +    +       +T   DI+ 
Sbjct: 404 LERQLLPTITKAAQGDNPSDVTTEV-----DGRVYRWNLSPIMVEGQIISIITQGQDITT 458

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + + +   A++ AE+ +  +++FLA++SHE+RTPL  ++G S+++K        N   
Sbjct: 459 IAEAEKQSQAARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRTPL----NDEQ 514

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            E+   +  SG  +L ++ND+LD S++E GK  +      L E V     + +   NEK 
Sbjct: 515 REHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKNEFRLKELVCAIDRIYRPLCNEKG 574

Query: 684 ILIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EVIL 739
           + +  +        + +D   + QI  N+L+NAI FT  G  I +       +   ++++
Sbjct: 575 LELVVNSNITTAAIVRSDQIRINQILFNLLNNAIKFTHQGS-IRVELQLIEGDPLAQLVI 633

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
           +V DTG+G+   +L    +PF Q  ++      G+GLGL +  ++V+   G+ ++ S   
Sbjct: 634 QVVDTGIGIREQDLTVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHVSSEYG 693

Query: 800 KGTLIEIIFPLYDTSHP 816
            GT  EI  P+     P
Sbjct: 694 IGTRFEIQLPIELVEKP 710


>gi|284051252|ref|ZP_06381462.1| histidine kinase [Arthrospira platensis str. Paraca]
          Length = 1064

 Score =  296 bits (758), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 75/266 (28%), Positives = 134/266 (50%), Gaps = 12/266 (4%)

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
           + +   DI+E  +   +L+       + +  K +FLA +SHE++TPLTA++G S ++K++
Sbjct: 321 WLIIAQDITEQYRVAQELTAKNADLIQLNRLKDEFLACISHELKTPLTAVLGLSSLLKDK 380

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
             G L + R  +YA  I +SG  ++ +VND+LD+++IE+G++ L  E V++      A+ 
Sbjct: 381 ALGELSD-RQAKYAKLIHQSGRHLMMVVNDILDLTRIETGQLELTPEGVNIQTVCDRALE 439

Query: 674 LVQLYANEKRIL----------IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
            V     +  I                   +  I AD   ++Q+ +N++SNA  FTP GG
Sbjct: 440 AVLHLHQQGDIKDSQSSLGSQKFSIEIEPGLETIEADELRLRQMLINLISNAFKFTPDGG 499

Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
            + +      +  ++  V DTG+G+   +     + F Q+ +    + EGTGLGL L + 
Sbjct: 500 SMGLRVNRWED-WIVFTVWDTGIGIPEQKQHLIFEKFQQLESPLTRQFEGTGLGLVLCQR 558

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFP 809
           +   + G     S   KGT   ++ P
Sbjct: 559 LARLHGGDISFISHKGKGTEFTLLLP 584


>gi|91070383|gb|ABE11297.1| two-component sensor histidine kinase [uncultured Prochlorococcus
           marinus clone HF10-88H9]
          Length = 688

 Score =  296 bits (758), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 79/394 (20%), Positives = 175/394 (44%), Gaps = 41/394 (10%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            +++   ++  S++   +DG  +++ +G I+ TN    +LF +    +  K F   + + 
Sbjct: 288 EELKAAQIKQQSLIATMADGAILLDSQGKIVLTNPTAKRLFRWEGRFLEGKYFLNEIPEI 347

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEE-KLLSLRIIIKKLPFSSCYSLTMHDISE 563
             + ++  +  IL+ +  +   + +LG      +++   ++          ++T+ D++ 
Sbjct: 348 LSNDLHTNIGSILNREKEKDDLRFSLGEPARTLRIVLQSVLDTNKVELKGIAVTIQDLTR 407

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
                           + ++ ++ F++ VSHE+RTPL  I  + E + + +   L +   
Sbjct: 408 --------------EVELNAAQNRFISNVSHELRTPLFNIKSYVETLHDLK-DQLSDEEQ 452

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
           IE+    +   + +  +VND+LD+S++ESGK+ +  + + +  A+ + +   +L A EK 
Sbjct: 453 IEFLGIANSETDRLTRLVNDVLDLSRLESGKI-VQLDQIDIKPAIEQTLRNYRLNATEKN 511

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-------- 735
           + +       IP IL +   + Q+  N+L N + F+P    +II      +         
Sbjct: 512 VSLAHEIEETIPPILGNFDLLLQVFDNLLGNGLKFSPKNSSLIIRAYTWPDSCPAFPPNI 571

Query: 736 ---------------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
                          +V + + DTG G++  + EK    F ++ NS     +GTGLGL +
Sbjct: 572 KNDAAPQCELVSPLPKVRIEIADTGSGISQADQEKIFDRFYRVENSV-HTEQGTGLGLSI 630

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
            + +++ + G+  + S    GT       L  + 
Sbjct: 631 VRGIIEKHGGEIRMASELGVGTTFWFDLALAQSD 664


>gi|90021885|ref|YP_527712.1| sensor/response regulator hybrid [Saccharophagus degradans 2-40]
 gi|89951485|gb|ABD81500.1| ATP-binding region, ATPase-like protein [Saccharophagus degradans
           2-40]
          Length = 942

 Score =  296 bits (758), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 86/243 (35%), Positives = 137/243 (56%), Gaps = 10/243 (4%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  A+K A + S  KS+FLA  SHEIRTPL  I+GFSE+++        N + ++Y   
Sbjct: 257 ELDIARKSALQASRVKSEFLANTSHEIRTPLNGILGFSELLRKTEL----NNQQVDYLTT 312

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I+ S   +L I+ND+LD S++E G + L ++PV + + + + + L    ANEK I + T 
Sbjct: 313 IEESAKGLLTIINDILDFSRLEIGTLTLEYKPVKIRQLIEDTLKLQTPAANEKNIRMLTI 372

Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDT 744
             +++P  +L D   +KQ+  N++SNAI FT  G  I++  +   + E    +  RV D+
Sbjct: 373 IDHDVPENLLGDPLRLKQVLSNLVSNAIKFTDVG-YILLGVSKDQSSENQFTLKFRVTDS 431

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G++  + E+   PF Q+ +S+     GTGLGL +AK +VD   G   + ST  KG   
Sbjct: 432 GIGLSQDQQERLFDPFTQLDSSESRLHGGTGLGLAIAKGLVDRMNGTIGVESTLGKGATF 491

Query: 805 EII 807
              
Sbjct: 492 WFT 494


>gi|83646935|ref|YP_435370.1| bacteriophytochrome [Hahella chejuensis KCTC 2396]
 gi|83634978|gb|ABC30945.1| Bacteriophytochrome (light-regulated signal transduction histidine
           kinase) [Hahella chejuensis KCTC 2396]
          Length = 679

 Score =  296 bits (758), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 87/582 (14%), Positives = 198/582 (34%), Gaps = 58/582 (9%)

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE------ 317
              + LP   ++  +  N   K        +   +   YL  +         +       
Sbjct: 115 PRITQLPSFNEWRELTDNLQNKLALSSLRSDELTQVKAYLEKQVAQRTEELQNLNRCLER 174

Query: 318 ---GENLTPETVDKCPIPF-----FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL--- 366
                 +  E  +            V + G +   N     +  Y   +  +    L   
Sbjct: 175 ENIERRMAEERANTISNAVGYGLVVVNNDGLIQSFNSVLTEMLGYSKEELKQQPIELLLP 234

Query: 367 -----------STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
                      +  L  P+       + +     +   I     L  +      ++  T 
Sbjct: 235 ESIRHQHQIQRNAYLKRPETRKMGVGRDLWARHKNGGQIPVEVGLTAVHEYDSYTIIATV 294

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG--I 473
           I   +  +  E + +   +    +T   ++ ++    +  +I E    G+  ++  G   
Sbjct: 295 IDITERKRMQEQI-EQAHQKYIRETNEIQKALKESEAKFRTIAETLP-GVVWMSSPGIDR 352

Query: 474 ILSTNRAVSKLFGYPVEDILRKP--FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
           I   NR   +++G   + +   P  F   +       +   L      +           
Sbjct: 353 IYFINRRYEEIWGRSCQSLYETPKGFIDAIVPEDRDRILKGLERHKQGEWSHNY----RI 408

Query: 532 STKEEKLLSLRIIIKKLPFSSCYSLTMH----DISEWKQEKNKLSHAKKIAEKESSHKSD 587
                 L  +      +       + +     D++E  +        K+   + +    D
Sbjct: 409 IDAWGSLRYIEDKGHGVMDEDGRLICLIGMAADVTEQIK-------HKEALLRSNQELDD 461

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           F    SH+++ PL  I  ++  +       L +    +    + R  + +  ++ +LL  
Sbjct: 462 FAYIASHDLKEPLRGISNYASFLIEDYQDRL-DDNGRQMLRSLVRLTSRMERLITELLHY 520

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707
           S++  G+ +L  E  +L+  V+E I  ++   NE  +  R   AN +P I  D   V ++
Sbjct: 521 SRL--GRTDLSIESCNLNTVVTEVIETLEPRLNELGVACR--IANKLPEIKCDRVRVAEV 576

Query: 708 ALNILSNAIHFTPSGGQ-IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
             N+++NA+ +     + + +  +   N + I  V+D G+G+++   EK  K F ++   
Sbjct: 577 FRNLIANAMKYNDKEEKWVTVG-SFEENAQRIFYVKDNGIGISSNLYEKIFKIFKRLHPQ 635

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
              +  GTG+GL + K +V+ + G+ ++ S+  +GT      
Sbjct: 636 D--KYGGTGVGLTIVKKIVERHGGRIWLDSSSGEGTTFYFTL 675



 Score = 41.9 bits (97), Expect = 0.44,   Method: Composition-based stats.
 Identities = 23/266 (8%), Positives = 62/266 (23%), Gaps = 32/266 (12%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD--LLKRQNTWYGK 146
           ++  G ++  +  L + +G    + +  +  ++     I   + I     LKR  T    
Sbjct: 200 VNNDGLIQSFNSVLTEMLGYSKEE-LKQQPIELLLPESIRHQHQIQRNAYLKRPETRKMG 258

Query: 147 TTL--WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA--------- 195
                W        +P+++    ++    E+  +     V         +          
Sbjct: 259 VGRDLWARHKNGGQIPVEVGLTAVH----EYDSYTIIATVIDITERKRMQEQIEQAHQKY 314

Query: 196 ---------LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ-----QSPPPHLRMKNKVS 241
                      K  + KF  + E   G   +     D         +            +
Sbjct: 315 IRETNEIQKALKESEAKFRTIAETLPGVVWMSSPGIDRIYFINRRYEEIWGRSCQSLYET 374

Query: 242 SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301
                 A   +        L   ++              +    +     + +       
Sbjct: 375 PKGFIDAIVPEDRDRILKGLERHKQGEWSHNYRIIDAWGSLRYIEDKGHGVMDEDGRLIC 434

Query: 302 YLSHRNHPSLSAYFDEGENLTPETVD 327
            +      +      E    + + +D
Sbjct: 435 LIGMAADVTEQIKHKEALLRSNQELD 460


>gi|83717440|ref|YP_439204.1| sensory box histidine kinase [Burkholderia thailandensis E264]
 gi|83651265|gb|ABC35329.1| sensory box histidine kinase [Burkholderia thailandensis E264]
          Length = 812

 Score =  296 bits (758), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 97/633 (15%), Positives = 208/633 (32%), Gaps = 28/633 (4%)

Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE 245
             R + D  A   + D          +     ++++                  + S   
Sbjct: 189 EIRKEFDALAPLVQDDPVQQRRLAALRTLLKRKQDELAATIALRKSEGFDAAQAIVSSDA 248

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
                D           T ++     ++                G L      SF Y+  
Sbjct: 249 GKIFMDRARTMVNDMEATVQQQLRALRDRARATRDVAIAVGLASGLLTLVVCVSFGYVMR 308

Query: 306 RNHPSLSAYFD---EGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIE 361
           R     SA  D       L   T+             G + + N     +T   +   + 
Sbjct: 309 RLLLVESAASDDLFAQRELLHVTLASIGDGVIATDVDGRITFFNRVAEEMTALAADAVVG 368

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                  L     L+      P  +    +   A       +       L +        
Sbjct: 369 QPIEQ-VLTFRHALTQRVIDNPARVAVERKRIAALPVHTRFV-GRGGGELPVDGNAAPTF 426

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
           +   + +    +  +  +    + +  +        +EA  + + ++NREG I+  N   
Sbjct: 427 DANGKLVGAVLVVRDVSERERAEERFRLA-------VEAAPNAMIMVNREGKIVLVNSQA 479

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLL 539
            K F Y   D++ +   + + +   +    +          + +   +   G  ++    
Sbjct: 480 EKFFDYVRGDMIGQGIDMLVPERFRAGHATHRGAFFGKPDARPMGAGRDLFGLRRDGSEF 539

Query: 540 SLRIIIKKLPFSSCYSLT--MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
            + I +  +  S    +   + DI+  K+ +++L    +   + +     F    SH+++
Sbjct: 540 PVEIGLNPITTSEGAFVLCSITDITARKRAEHELRRRSEELARSNQDLEQFAYVASHDLQ 599

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
            PL A+ G  ++++ +  G L + R  E+  +       +  +++DLL  S++  G++  
Sbjct: 600 EPLRAVAGPLQLLQRRYQGQL-DARADEFIGHAVDGATRMQSLIDDLLSYSRV--GRLED 656

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
             +PV  +  + EA+  +     E    I       +P +      +  +  N++ NAI 
Sbjct: 657 ARQPVDCERVLDEALRNLSAAIRESGAQITHD---RLPIVHGIAAQLVLLFQNLIGNAIK 713

Query: 718 FTPSG--GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           F       +I +      +  V  RVRD G+G+     E+    F ++    +    GTG
Sbjct: 714 FRSKERIARIHLEADTRDDAWV-FRVRDNGIGIDPQYFERIFLIFQRLH--TRREYPGTG 770

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           LGL L K +V+ + G+  + S P +GT      
Sbjct: 771 LGLALCKRIVEHHGGRIAVESEPGRGTTFSFAL 803



 Score = 50.8 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 36/366 (9%), Positives = 80/366 (21%), Gaps = 24/366 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV------SDILHIDPNNHIGDLLKRQNT 142
            D  G +   +    +     A  ++G  +  V           ID    +    KR   
Sbjct: 342 TDVDGRITFFNRVAEEMTALAADAVVGQPIEQVLTFRHALTQRVIDNPARVAVERKRIAA 401

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
               T      G    +P+D  A P +  N +  G     +V             +   +
Sbjct: 402 LPVHTRFVGRGGG--ELPVDGNAAPTFDANGKLVGA--VLVVRDVSERERAEERFRLAVE 457

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
              +   +      +                  +   +  L               +   
Sbjct: 458 AAPNAMIMVNREGKIVLVNSQAEKFFDYVRGDMIGQGIDMLVPERFRAGHATHRGAFFGK 517

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
                    ++ F           +        S+ +F   S  +  +      E    +
Sbjct: 518 PDARPMGAGRDLFGLRRDGSEFPVEIGLNPITTSEGAFVLCSITDITARKRAEHELRRRS 577

Query: 323 PETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD-NNAI 381
            E                       F  +  +   + +    G   LL        +   
Sbjct: 578 EELARSNQDL-------------EQFAYVASHDLQEPLRAVAGPLQLLQRRYQGQLDARA 624

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
              + +  D      S     + ++R   L     P +      E +        +   +
Sbjct: 625 DEFIGHAVDGATRMQSLIDDLLSYSRVGRLEDARQPVDCERVLDEALRNLSAAIRESGAQ 684

Query: 442 INKRKM 447
           I   ++
Sbjct: 685 ITHDRL 690


>gi|303247968|ref|ZP_07334235.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           fructosovorans JJ]
 gi|302490692|gb|EFL50595.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           fructosovorans JJ]
          Length = 655

 Score =  296 bits (758), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 108/626 (17%), Positives = 208/626 (33%), Gaps = 70/626 (11%)

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFH-TINLNQYTKKQYFGTLQNNSKESFEYLSH 305
           Y  +   L+ E    L++    L +            +  +   G ++N    +     H
Sbjct: 36  YLSEKQRLEAELRYDLSAIADQLADNLAMPLWYLEKDHAARLIDGVMRNERIAAVVVTEH 95

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKS----VDDIE 361
            N         +         ++  +   +     + Y N     L  + +     +D+ 
Sbjct: 96  GNKGVAIGRTRDRAWNPSVATERPALSDVIGERREIRYENKPLGTLDLFATRRFVEEDLR 155

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
            +     L      +    +   +L             +  +      +  ++       
Sbjct: 156 QSLARIILRILGLNAALALVLAGVLRWR---------IIQPLSRLERYAARVSLGDDPGD 206

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
                 +               KR +         I E  ++GI     +G ILS N A+
Sbjct: 207 PAELAGLRFELQSLGRTMRSTVKR-LSAAQRNYRDIFENATEGIFQTTFDGRILSANAAM 265

Query: 482 SKLFGYPVEDILRKPFTVFLEQ--NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
           + + GY     L         Q  + P      L  ++          +     ++ + +
Sbjct: 266 ADILGYDSPQALMDGVVDVGRQLFHNPEERRDMLRRLVDEG--SVAGLVVRFVRRDGQTI 323

Query: 540 SLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAEKE-------------- 581
            +R+ I+ +  ++        TM D++   + + +L    +   +               
Sbjct: 324 WVRLNIRLVRDATGTPLYTEGTMSDVTARLRAERRLEILNRHLREAVKERTGRLAEKAAE 383

Query: 582 -----------SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ--------RFGPLGNPR 622
                         KS FLA VSH++RTPLT+I+GF+++I             G     R
Sbjct: 384 LEAANTRLTELDRLKSGFLATVSHDLRTPLTSIMGFAKLIARDFNRFFAPFAQGSGPGDR 443

Query: 623 YI-------EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
                    +    I+  G  +  ++ND LD+SKIE+G+       V     ++ A   V
Sbjct: 444 LRRQAKRITDNLGIIESEGERLTRLINDFLDLSKIEAGRAEWRDANVVPAAIITRAADAV 503

Query: 676 QLYANEK-RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
                 K  +        ++P +  D   + Q+ +N+L NA  FT  G  + +      +
Sbjct: 504 SADFEAKPEVAFSMDLTPDLPELWIDPDRLSQVLVNLLGNAAKFTDEG-HVRLR-AFRRD 561

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ----IRGEGTGLGLPLAKAMVDANMG 790
             + + V DTG G+    LEK    F Q           R +GTGLGL + + +V+   G
Sbjct: 562 GMLRVEVADTGQGVPRESLEKIFDKFHQAQAGDTVEEGRRRKGTGLGLAICRQIVEHYNG 621

Query: 791 KFYIFSTPAKGTLIEIIFPLYDTSHP 816
           + +  S   +G+   +  PL  T+ P
Sbjct: 622 RIWAESELGRGSTFIMELPLPVTADP 647



 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/370 (6%), Positives = 79/370 (21%), Gaps = 18/370 (4%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI--GDLLKRQNTW 143
            +     G +   +  +   +G  + + +   + DV   L  +P         L  + + 
Sbjct: 249 IFQTTFDGRILSANAAMADILGYDSPQALMDGVVDVGRQLFHNPEERRDMLRRLVDEGSV 308

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
            G    + +      + + L    +           G   +             + L++ 
Sbjct: 309 AGLVVRF-VRRDGQTIWVRLNIRLVRDATGTPLYTEG--TMSDVTARLRAERRLEILNRH 365

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
                + + G  + +  + +  + +           +++++         +      +  
Sbjct: 366 LREAVKERTGRLAEKAAELEAANTRLTELDRLKSGFLATVSHDLRTPLTSIMGFAKLIAR 425

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
                                + +         +   E L+   +  L     E      
Sbjct: 426 DFNRFFAPFAQGSGPGDRLRRQAKRITDNLGIIESEGERLTRLINDFLDLSKIEAGRAEW 485

Query: 324 ETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
              +  P          +  A  +     + K      +                + +  
Sbjct: 486 RDANVVPAAI-------ITRAADAVSADFEAKPEVAFSMDLTPDLPELWIDPDRLSQVLV 538

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
            +L  + +       RL   + +                             +       
Sbjct: 539 NLLGNAAKFTDEGHVRLRAFRRDG------MLRVEVADTGQGVPRESLEKIFDKFHQAQA 592

Query: 444 KRKMEIEVMQ 453
              +E    +
Sbjct: 593 GDTVEEGRRR 602


>gi|241203748|ref|YP_002974844.1| histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240857638|gb|ACS55305.1| histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 503

 Score =  296 bits (758), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 111/446 (24%), Positives = 192/446 (43%), Gaps = 11/446 (2%)

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
           L      +    + + + R      +A+     I  +   S A+   P   A      + 
Sbjct: 13  LSRTGGGEAVRQRELAILRRLVLLSSAALVAAPIGLSAVTSPAVAL-PAGVAMVCAAFLF 71

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
                                       L AT   +  ++  G + +      + F   +
Sbjct: 72  SAVGSIALARQGSAAGIATQSAEDF--FLAATPGLVFFLDPHGSVATIGGRDRRDFLGWM 129

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS---TKEEKLLSLRIIIK 546
            D   + F   +  +   +    L  +   +  Q+++           + +   LR+ + 
Sbjct: 130 RDPKGRGFLEQVHVSDRILFLQALDGLRRGEDAQSVDLRLDRPSVSRDQRQFAYLRMDMT 189

Query: 547 KLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
               +          + D+S  +Q +++  +    AE  +  KS FLA VSHE+RTPL A
Sbjct: 190 ARRDADGELAAIIAQLRDVSVEQQLRDEAQNRAADAESANDAKSRFLAAVSHELRTPLNA 249

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           I+GFS+++  + FG   N R  EY   +  SG  +L +VN +LD+SKIE+G+  L  E  
Sbjct: 250 ILGFSDILIGEYFGKFENDRQREYVGLVRESGAHLLSVVNTMLDMSKIEAGRYELILEAF 309

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
            +  +V    S++ L A  K + + +    ++  ++AD R+++QI +N++ NAI FT +G
Sbjct: 310 DISSSVKSCESMLALQAKTKGLTLTSRIQRDLGEVVADQRAIQQILINLVGNAIKFTEAG 369

Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
           G + +         + L V DTG+G+   +L    +PF QI N    R EG+GLGL L K
Sbjct: 370 GVVSVDAAARD-GILKLTVSDTGIGIPADKLALLGQPFVQIQNDYTRRFEGSGLGLSLVK 428

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIF 808
            +V  + G F I S P +GT+I I  
Sbjct: 429 GLVALHGGYFAIASQPGEGTIITIEI 454


>gi|222152721|ref|YP_002561898.1| sensor histidine kinase [Streptococcus uberis 0140J]
 gi|222113534|emb|CAR41324.1| sensor histidine kinase [Streptococcus uberis 0140J]
          Length = 452

 Score =  296 bits (758), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 90/406 (22%), Positives = 170/406 (41%), Gaps = 36/406 (8%)

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDT-RINKRKMEIEVMQLCSILEATSDGIAIINREG 472
            +          E +  +    +  D  R+    +  E  +L SIL   SDG+   +R G
Sbjct: 55  RYTDEINEKADIELIELSEQLNDLSDVFRLTHENLAQEKNRLASILAYMSDGVLATDRTG 114

Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
            I+  N    K      E+ L    T  L Q+TP      +++        TL +     
Sbjct: 115 QIMMINETAQKQLNISKEEALLMNITDLLGQDTPYTYRELVSKT----PIVTLNR----R 166

Query: 533 TKEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
            +  + ++LR+        S +     + +HD +E ++E+ +                 F
Sbjct: 167 DETGEFITLRLRFALNRRESGFISGLVVVLHDTTEQEKEERERRL--------------F 212

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
           ++ VSHE+RTPLT++  + E +     G L       +        N ++ +++DLL++S
Sbjct: 213 VSNVSHELRTPLTSVKSYLEAL---DEGALKEDIAPSFIKVSLDETNRMMRMISDLLNLS 269

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLV-----QLYANEKRILIRTSFANNIPRILADLRS 703
           +I++    L  E  +    ++  ++       Q   + K   I   +      +  D   
Sbjct: 270 RIDNQVTALAVEMTNFTAFMTSILNRFDLVRNQNTVSGKSYEIIRDYPITSVWLEIDNDK 329

Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
           + Q+  NIL+NAI ++P GG+I +    T + ++I+ + D G+G+   +L      F ++
Sbjct: 330 MTQVIENILNNAIKYSPDGGKIRVKMKTTDS-QLIISISDQGLGIPKKDLPLIFDRFYRV 388

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             ++     GTGLGL +AK +V  + G  +  S   KG+   I+ P
Sbjct: 389 DKARSRAQGGTGLGLAIAKEIVKQHNGFIWAKSDYGKGSTFTIVLP 434


>gi|329851559|ref|ZP_08266316.1| sensory box protein [Asticcacaulis biprosthecum C19]
 gi|328840405|gb|EGF89977.1| sensory box protein [Asticcacaulis biprosthecum C19]
          Length = 873

 Score =  296 bits (758), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 110/611 (18%), Positives = 216/611 (35%), Gaps = 39/611 (6%)

Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291
             +R    +   TE  A    V +          E  L  +      +      +     
Sbjct: 269 GKVRHFADLIPETERPAVLQGVRRQLDTADRFEIEFRLQPRTVAGGGSRRPVWVRVNGHV 328

Query: 292 LQNNSKESFEYLSHRNHPSLSAYFD----EGENLTPETVDKCPIPFFVYS-HGNLFYANP 346
               +  +          +L    +    E E       D  P   ++    G+  + N 
Sbjct: 329 KARETDGAITIEGFMQDITLRKATEAKVAESEKQFRALADSTPNLLWITDLDGDCVFFNR 388

Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
           ++L     ++++D   AG L+ +      +        +  ++   C         ++  
Sbjct: 389 TWLDFRG-QALNDETDAGWLAHVHHEDVAACTEKFSEGVAQQAAFQCW------FRLRRA 441

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
             +   M      + N             +  D +  + +++     L      T   IA
Sbjct: 442 DGDYRWMLANATPRLNSAGRCEGFILAATDITDRKAFETRLKRTAQHLELFFRHTPAAIA 501

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
           + N E   L  +      FG    D + +     +        +      LS ++     
Sbjct: 502 VFNIELRHLMVSERWRSDFGLYDSDPIGRTLYQ-VAPAQAEYWHDEHRRCLSGEIVTNSG 560

Query: 527 KITLGSTKEEKLLSLRIIIKKLPF-SSCYSLTMHDISEWKQEKNKLSHAK---------- 575
            +       E+ +S                +    I+E K+ + +L+  +          
Sbjct: 561 ALVPMPGGGEEWISYAFHPWYEDDMVMGIIMFTEVITERKRLEGELTQHRDNLQSLVEAQ 620

Query: 576 --------KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN----PRY 623
                   + AE     KS+FL+ +SHE+RTP+ AI+ ++  +  +R   L +     + 
Sbjct: 621 TSDLRQAKEQAEASVRAKSEFLSNMSHELRTPMHAILNYAA-MGEKRLTGLPSGDGVDKL 679

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            +Y   I  +G  +L ++N+LLD++K+ESGKM     P  L   V ++   +      ++
Sbjct: 680 TKYLGNIRTAGTRLLGLLNNLLDLAKLESGKMTFDLAPTDLRGVVEQSCMELDSLVKARQ 739

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
           + +   +      I  D   + Q+ +N+LSNAI F+P GG + ++        +I  V D
Sbjct: 740 LHLDVEWNAADTVITVDRGRLIQVMVNLLSNAIKFSPEGGNVSVAVE-EDRYGLICTVSD 798

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
            G G+   ELE   + F Q   ++     GTGLGL + + +V A+ G+ +  +   KG  
Sbjct: 799 DGPGVPEGELEHIFETFVQSSETRSGA-GGTGLGLSICRQIVGAHGGRIWAENLHPKGAR 857

Query: 804 IEIIFPLYDTS 814
           +    P   T+
Sbjct: 858 LAFTLPRERTA 868



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/394 (10%), Positives = 105/394 (26%), Gaps = 30/394 (7%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIG---MRLCDVSDILHIDPNNH-IGDLLKRQ 140
           F   +D +  ++ I+  +    G  +   +        D+            +   L   
Sbjct: 238 FECRLDDNLTVQFINSYIETLTGYPSSDFVRGKVRHFADLIPETERPAVLQGVRRQLDTA 297

Query: 141 NTWYGKTTLWPI----EGTNLYVPIDLAALPIYSRNREFSGFRGF-GIVHVNRVDNDPRA 195
           + +  +  L P      G+   V + +     + + RE  G     G +    +     A
Sbjct: 298 DRFEIEFRLQPRTVAGGGSRRPVWVRVNG---HVKARETDGAITIEGFMQDITLRKATEA 354

Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP----PHLRMKNKVSSLTEYYAHKD 251
                +K+F  L +       +     D                     +    +  H+D
Sbjct: 355 KVAESEKQFRALADSTPNLLWITDLDGDCVFFNRTWLDFRGQALNDETDAGWLAHVHHED 414

Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
               TEK+    +++++          + +            N++     ++      + 
Sbjct: 415 VAACTEKFSEGVAQQAAFQCWFRLRRADGDYRWMLANATPRLNSAGRCEGFILAATDITD 474

Query: 312 SAYFDEGENLTPETVD----KCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
              F+     T + ++      P    V++        +  +         D I      
Sbjct: 475 RKAFETRLKRTAQHLELFFRHTPAAIAVFNIELRHLMVSERWRSDFGLYDSDPIG----- 529

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
              L     +                 +  S  L  +    E  ++  F P+ + +    
Sbjct: 530 -RTLYQVAPAQAEYWHDEHRRCLSGEIVTNSGALVPMPGGGEEWISYAFHPWYEDD---M 585

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
            M          + +  + ++      L S++EA
Sbjct: 586 VMGIIMFTEVITERKRLEGELTQHRDNLQSLVEA 619



 Score = 54.6 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 46/429 (10%), Positives = 93/429 (21%), Gaps = 25/429 (5%)

Query: 60  ESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLC 119
              +     +SE  F            W  D  G     +       G            
Sbjct: 349 RKATEAKVAESEKQFRALADSTP-NLLWITDLDGDCVFFNRTWLDFRGQALNDETDAGWL 407

Query: 120 DVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGF 178
                  +        + + +Q  +     L   +G   Y  +   A P  +      GF
Sbjct: 408 AHVHHEDVAACTEKFSEGVAQQAAFQCWFRLRRADGD--YRWMLANATPRLNSAGRCEGF 465

Query: 179 RGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS---PPPHLR 235
                              KR  +             +V   +               L 
Sbjct: 466 --ILAATDITDRKAFETRLKRTAQHLELFFRHTPAAIAVFNIELRHLMVSERWRSDFGLY 523

Query: 236 MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN 295
             + +       A        +++    S E               +      F     +
Sbjct: 524 DSDPIGRTLYQVAPAQAEYWHDEHRRCLSGEIVTNSGALVPMPGGGEEWISYAFHPWYED 583

Query: 296 S---KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLT 352
                             L     +  +     V+            +L  A        
Sbjct: 584 DMVMGIIMFTEVITERKRLEGELTQHRDNLQSLVEA--------QTSDLRQAKEQAEASV 635

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
           + KS     ++  L T + A         K +    S       +  L  I+      L 
Sbjct: 636 RAKSEFLSNMSHELRTPMHAILNYAAMGEKRLTGLPSGDGVDKLTKYLGNIRTAGTRLLG 695

Query: 413 MTFIPFEKANQFPENMPQNGIEPE---DVDTRINKRKMEIEVMQLCSILE-ATSDGIAII 468
           +     + A      M  +    +    V+    +    ++  QL   +E   +D +  +
Sbjct: 696 LLNNLLDLAKLESGKMTFDLAPTDLRGVVEQSCMELDSLVKARQLHLDVEWNAADTVITV 755

Query: 469 NREGIILST 477
           +R G ++  
Sbjct: 756 DR-GRLIQV 763


>gi|153829850|ref|ZP_01982517.1| sensor histidine kinase LuxQ [Vibrio cholerae 623-39]
 gi|229528389|ref|ZP_04417780.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae
           12129(1)]
 gi|148874651|gb|EDL72786.1| sensor histidine kinase LuxQ [Vibrio cholerae 623-39]
 gi|229334751|gb|EEO00237.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae
           12129(1)]
 gi|327485743|gb|AEA80149.1| Autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae
           LMA3894-4]
          Length = 857

 Score =  296 bits (758), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 83/377 (22%), Positives = 162/377 (42%), Gaps = 21/377 (5%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           R++  +  Q   +         + N  G ++  N +    F              FL + 
Sbjct: 350 RRLANKEKQFEDLFNFALSPTMLWNTSGRLIRMNPSAQIQFLREDAQ------NHFLFEI 403

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT-MHDISE 563
               +   +T+    D    +         + ++    +    +       +T   DI+ 
Sbjct: 404 LERQLLPTITKAAQGDNPSDVTTEV-----DGRVYRWNLSPIMVEGQIISIITQGQDITT 458

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + + +   A++ AE+ +  +++FLA++SHE+RTPL  ++G S+++K        N   
Sbjct: 459 IAEAEKQSQAARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRTPL----NDEQ 514

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            E+   +  SG  +L ++ND+LD S++E GK  +      L E V     + +   NEK 
Sbjct: 515 REHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKNEFRLKELVCAIDRIYRPLCNEKG 574

Query: 684 ILIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EVIL 739
           + +  +        + +D   + QI  N+L+NAI FT  G  I +       +   ++++
Sbjct: 575 LELVVNSNITTAAIVRSDQIRINQILFNLLNNAIKFTHQGS-IRVELQLIEGDPLAQLVI 633

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
           +V DTG+G+   +L    +PF Q  ++      G+GLGL +  ++V+   G+ ++ S   
Sbjct: 634 QVVDTGIGIREQDLTVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHVSSEYG 693

Query: 800 KGTLIEIIFPLYDTSHP 816
            GT  EI  P+     P
Sbjct: 694 IGTRFEIQLPIELVEKP 710


>gi|59712689|ref|YP_205465.1| hybrid sensory histidine kinase BarA [Vibrio fischeri ES114]
 gi|59480790|gb|AAW86577.1| hybrid sensory histidine kinase, in two-component regulatory system
           with GacA [Vibrio fischeri ES114]
          Length = 931

 Score =  296 bits (758), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 87/341 (25%), Positives = 158/341 (46%), Gaps = 17/341 (4%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +F Y +   + +P +  +      V++      L + +   L             +++ +
Sbjct: 190 IFAYRLMQDVTQPISHMVS-----VVDRIRRGHLDVRIENKLHGELDTLKNGINAMAISL 244

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
               +           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 245 SEYHVEMQQSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTP 304

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+  +         +    +Y   I+RS N +L I+ND+LD SK+E+GK+ L  
Sbjct: 305 LNGVIGFTRQMLKTSL----SENQQDYLQTIERSANNLLTIINDILDFSKLEAGKLLLEN 360

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P    +++ E +SL+   A+EK + I       +P  ++ D   ++Q+  N++ NAI F
Sbjct: 361 LPFDFQDSLDEVVSLLAPSAHEKGLEITLKIDQRVPSGLIGDPLRIQQVLNNLVGNAIKF 420

Query: 719 TPSGGQ-IIISTTHTSNEEV--ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T  G   I +   H +++ V     VRDTG+G++  +  +  + F Q   S   R  GTG
Sbjct: 421 TEKGNIDISVELKHLTDDYVDLQFVVRDTGIGISERQQAQLFQAFSQADASISRRYGGTG 480

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           LGL + + ++    G+  + S   +G+       +  T  P
Sbjct: 481 LGLVITQKLISQMGGEIGLSSRLHQGSTFWFTIRMNPTDLP 521


>gi|157961008|ref|YP_001501042.1| hybrid sensory histidine kinase BarA [Shewanella pealeana ATCC
           700345]
 gi|157846008|gb|ABV86507.1| Hpt sensor hybrid histidine kinase [Shewanella pealeana ATCC
           700345]
          Length = 929

 Score =  296 bits (758), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 84/245 (34%), Positives = 130/245 (53%), Gaps = 8/245 (3%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  AKK A++ S  KS+FLA +SHE+RTPL  +IGF++ +         +    +Y   
Sbjct: 286 ELDMAKKRAQEASRIKSEFLANMSHELRTPLNGVIGFAKQLLKTPL----HSSQQDYIRT 341

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I+RS   +L I+ND+LD SK+E+GKM L   P SL E + E ++++   A EK + +   
Sbjct: 342 IERSATNLLSIINDILDFSKLEAGKMVLENIPFSLRETIEETVTMLSSSAREKELALVID 401

Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILR--VRDTG 745
               IP  +  D     QI  N++ NAI FT  G  Q+ +      + +V +R  + DTG
Sbjct: 402 VDARIPEDVSGDAMRFSQIITNLVGNAIKFTDKGSVQLKLQLEEVKDGKVHIRCEIIDTG 461

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+   +     + FGQ  +S   R  GTGLGL + K +V+   G+   +S P +G+   
Sbjct: 462 IGVDEQQQSSLFQAFGQADSSISRRFGGTGLGLVITKRLVNRMGGQIGCYSEPNQGSTFW 521

Query: 806 IIFPL 810
              PL
Sbjct: 522 FSLPL 526


>gi|94501118|ref|ZP_01307641.1| sensory box histidine kinase [Oceanobacter sp. RED65]
 gi|94426694|gb|EAT11679.1| sensory box histidine kinase [Oceanobacter sp. RED65]
          Length = 895

 Score =  296 bits (758), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 98/745 (13%), Positives = 238/745 (31%), Gaps = 39/745 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD----LLKRQNTWY 144
           +D    +  ++  L    G    ++ G  +  + D    + +  +        +  ++  
Sbjct: 155 VDKQFKMTVVNHHLASLFGYRVEELEGKPVNLLVDNAFAETHTALMQNYSKKPESSHSMA 214

Query: 145 GKTTLWPIEGTNLYVPIDLAALPI-YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
              T++       ++PI+++  P  Y+          F  V   +     + L  +   +
Sbjct: 215 YGRTIYGYSKDKRHIPIEISLTPQKYNNESHI-----FVSVFDVKEKTKNKELAYQAMAR 269

Query: 204 FSHLHEIKKGHSSVEKEKYD--IFSQQSPPPHLRMKNKVSSLTE--YYAHKDDV-LKTEK 258
              + E             D    S +         ++ +   +   + H D   +    
Sbjct: 270 TQRIAEATHDGLWEWNLVTDEVWMSDRQKEMIGLNADQGARFEDWFEHVHPDYRDIVLSH 329

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES----FEYLSHRNHPSLSAY 314
                 E           T        +    +L N+  ++        +          
Sbjct: 330 IRANQDEGKEFQVDYLGRTQIGGYQWFRARGDSLFNSDGKAILMSGALTNIDTIKRFELN 389

Query: 315 FDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKY--KSVDDIEIAGGLSTLL 370
             +      + +DK     ++++       Y N  +  LT Y    +  +++    + L+
Sbjct: 390 AVKRSKTLEKVLDKTICGVYIFNLKEHKTTYINHEYSYLTGYQLSHLQLMDLEDNGNGLI 449

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
               L                   +          N      ++           +    
Sbjct: 450 HPDDL---ERFTTHFKDIVSNPDYSKVLLYRFKHANGNWIWCLSKDSILSRYSSGKPKEL 506

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490
            G   +  + + ++           +  +  + GI  I+ +G  +  N  +S++ GYP E
Sbjct: 507 MGTFIDVTELKESEETQRRLRKDFENTFDQAAVGICHISLDGRFIKANEKISEILGYPSE 566

Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
            +    F         +    +L ++LS ++              ++ +  R+ +  +  
Sbjct: 567 QLHAMRFQDITHPLDLNDDLQHLNQLLSGEID-FYAIEKRYIHSNQRYVWARLTVSLVRD 625

Query: 551 S----SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
                  +   + DIS  KQ +  L    K  ++ +   + F    SH+++ PL  I  F
Sbjct: 626 GHNEPEYFISVIEDISHRKQLEESLIRLNKDLKRSNDQLTRFAYSASHDMQEPLRKITSF 685

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
           S  +  +      +       + +  +   + D+++ LL++S+  S  + L  E V L E
Sbjct: 686 SSSLYERLSAEQLDDTSRFELDRLISASMRMRDMISRLLELSR--SSNIALKLEDVLLSE 743

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726
            + +A   + +   +  +    +    +     D + +  +  N++ N++ +      + 
Sbjct: 744 VLQDAKEQLSMLFKDHPVSFIVNSDGAL---YCDKQVMSTVLQNLIKNSVKYQHESRPLE 800

Query: 727 ISTTHT-SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
           I           I+   D G+G  N    K  +PF ++ N      EGTG+GL +   +V
Sbjct: 801 IEINCEQEGGYSIIEFSDNGIGFDNKYKNKIFEPFKRLVNH--SEIEGTGMGLAICNQLV 858

Query: 786 DANMGKFYIFSTPAKGTLIEIIFPL 810
             + G+        +G++  I  P+
Sbjct: 859 HIHGGQMRAEGMEGQGSVFFIQLPI 883



 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/152 (13%), Positives = 61/152 (40%), Gaps = 13/152 (8%)

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
            +      ++E +  G+ +++++  +   N  ++ LFGY VE++  KP  + ++      
Sbjct: 136 AQNKLFKDVIEQSPIGLMLVDKQFKMTVVNHHLASLFGYRVEELEGKPVNLLVDNAFAET 195

Query: 509 MNHYLTEILSLDLRQ---TLEKITLGSTKEEKLLSLRIIIKK--LPFSSCYSLTMHDISE 563
               +                +   G +K+++ + + I +        S   +++ D+  
Sbjct: 196 HTALMQNYSKKPESSHSMAYGRTIYGYSKDKRHIPIEISLTPQKYNNESHIFVSVFDV-- 253

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
                 + +  K++A +    ++  +A  +H+
Sbjct: 254 -----KEKTKNKELAYQA-MARTQRIAEATHD 279


>gi|326802096|ref|YP_004319915.1| PAS/PAC sensor signal transduction histidine kinase
           [Sphingobacterium sp. 21]
 gi|326552860|gb|ADZ81245.1| PAS/PAC sensor signal transduction histidine kinase
           [Sphingobacterium sp. 21]
          Length = 539

 Score =  296 bits (758), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 72/494 (14%), Positives = 185/494 (37%), Gaps = 36/494 (7%)

Query: 331 IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390
             F   +   ++  N  + ++ + +  + +E  G          +   +  + + + +  
Sbjct: 62  AAFVKATSDVIYRMNADWTIMLELQGREFLEDTGEPIQHWMDKYIHSEDKEQILHVIQEA 121

Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450
               +     H ++         +       ++    +   G   +    +  +  +   
Sbjct: 122 LRTKSIFQLEHQVKRLDGKMGWASSRAIPIVDRDGNIIEWFGTTSDITQRKQAEEALRRS 181

Query: 451 VMQLC-------SILEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRKPFTVFLE 502
             +L        ++  +T D + + + +      N+A+  ++G   +E+   K       
Sbjct: 182 KDELEQQKRLYEAVTASTPDLVYVFDLQYKFTYANKALLIMWGKNTLEEAKGKGLRELGY 241

Query: 503 QNTPSVMNH-YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM--- 558
           +   + M+   + E+++       E     +T   ++            ++         
Sbjct: 242 EEWHAEMHEREIDEVVATKRLIRGEVAFPHATLGRRIYDYIFSPV-FDANNEIVAVAGTT 300

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            DI+E +Q               S  K +FLA  SHE++TP+T I  ++++    R    
Sbjct: 301 RDITEMRQL--------------SEQKDEFLAMASHELKTPVTVIKAYTQIF--HRSAQE 344

Query: 619 GNPRYIEYANY-IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
            N +        ++   + +   + +LLD+S+I+ GK++L  +    +E +   +  +Q 
Sbjct: 345 ANDKQAAALAIKMEAQIDKLTSRIAELLDVSRIQGGKLHLQEKHFDFNELIDGVVEEIQR 404

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH---TSN 734
             +  +I+ R + +     +  D   + Q+ +N+L+NAI ++P    I + T        
Sbjct: 405 TTHRHQIIRRLTTSR---TVFGDQDRIGQVVINLLTNAIKYSPQSDVIYVYTKLVNENQR 461

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
           + ++  V D G+G+   + E+  + F ++    Q    G GLGL +   ++  + G  ++
Sbjct: 462 DRIVFSVEDFGIGIPEADQERIFERFYRVTGGNQNTYPGLGLGLYICSEIIKWHGGTIWL 521

Query: 795 FSTPAKGTLIEIIF 808
            +    G++     
Sbjct: 522 KNKKEGGSIFSFSL 535


>gi|295094189|emb|CBK83280.1| Signal transduction histidine kinase [Coprococcus sp. ART55/1]
          Length = 581

 Score =  296 bits (758), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 81/342 (23%), Positives = 152/342 (44%), Gaps = 12/342 (3%)

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
           I+  N    + F   V D   K      +      +N + T   +   ++        + 
Sbjct: 95  IVDANEIFGEYFKLDVSDYKDK-ILKESKIEVLQDINAWFTAYNNSGTKEGDLMDVEITM 153

Query: 534 KEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
             E L  +   +     +   ++ + D+++ K+ + KLS A   A      +++FLA +S
Sbjct: 154 --ESLQKVFNTVMYKSEADYINMVVIDVTKQKETEEKLSKAIVDANAAYKTQAEFLANMS 211

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HEIRTP+  I+G    ++           Y +         + +L ++ND+LDISK+E+G
Sbjct: 212 HEIRTPINGILGM---LQLTLMAEDLQADYRDNLITAKNCADTLLRLINDILDISKLEAG 268

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNIL 712
           K  +  E   +  A+ + ++     A  K + +  SF +NIP+ +  D + ++Q+   +L
Sbjct: 269 KYKIKEETFDIRTAIEDTVAAQVPIATNKGLQLDCSFGSNIPKLVRGDGQRIQQVLNCLL 328

Query: 713 SNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
           SNAI FT  G  + +      + +    + + V DTG+G++   + K    F Q+  S  
Sbjct: 329 SNAIKFTSEGS-VRVKIASMDDGDNKIKIRMAVADTGIGISEANMSKLFIRFSQVDASDT 387

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            +  G+GLGL + K +V+   G   + S    G+   +  PL
Sbjct: 388 RKYGGSGLGLVITKQIVELMGGNITVQSKEDIGSTFIVEIPL 429


>gi|229044334|ref|ZP_04191999.1| hypothetical protein bcere0027_23620 [Bacillus cereus AH676]
 gi|228725001|gb|EEL76293.1| hypothetical protein bcere0027_23620 [Bacillus cereus AH676]
          Length = 590

 Score =  296 bits (758), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 88/501 (17%), Positives = 178/501 (35%), Gaps = 41/501 (8%)

Query: 314 YFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
              + E      +   P+    +  +G+    N    ++T Y + + I     L  L   
Sbjct: 102 LLSQKEEELHTILQNMPVMVDALDYNGDFVLWNRECEIVTGYTAEEIIGNPNALQLLYPD 161

Query: 373 PKLSDNNAIKPVM----LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
                    K +         +      +  + TI W+                      
Sbjct: 162 HNYRHQIQKKFLTCGKNFRDWEMHLTCKNGEIKTIMWSN-----------ISEQFPVTGY 210

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
               +  +    +  + +++ +  +L  I +A  D   +   +G I+         F  P
Sbjct: 211 SYWAVGVDITHLKAIEEQLKQQTSELELIFKALPDLCFLTEDDGTIIDYKAGSPTKFYVP 270

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            E  + K F   L  +        + ++        +E           +         L
Sbjct: 271 AEAFMGKKFYEVLPTSVAQQFQEAINQVKEKGTNVIVEYPLTL---NGSIDFFEARCLPL 327

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                  + + DI+E K+ +  L+ +  +A           A V+HE+R PLT I GF +
Sbjct: 328 LHDK-IMIIVRDITERKKTEELLNKSDTLA-----AIGQLAAGVAHEVRNPLTVIKGFIQ 381

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
                    +      +Y + +      +  I+ + L I+K +     ++ E  ++ +  
Sbjct: 382 ------LFQINKEDQEKYFDIMLSEIERIEAILQEFLAIAKTD----EINTEKKNIYQIF 431

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
              +SL+   A    I +     +    I      +KQ+ +NIL N+I   P+GG+I I 
Sbjct: 432 KNVVSLMNTKAIMTNIQVELFTDDKDIIIECSENQLKQVFINILQNSIEAMPNGGEISIH 491

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
               +++ VI+ V D G+G+    +++  +PF         + +GTG+GL L+  +++++
Sbjct: 492 IKEINDDGVIIHVIDEGIGIPEERIKRLGEPFY------STKEKGTGIGLMLSYKIIESH 545

Query: 789 MGKFYIFSTPAKGTLIEIIFP 809
            G   I S    GT + I  P
Sbjct: 546 RGTISIMSEVGVGTTVTIYLP 566


>gi|94267582|ref|ZP_01290931.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93451940|gb|EAT02659.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 399

 Score =  296 bits (758), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 71/254 (27%), Positives = 129/254 (50%), Gaps = 13/254 (5%)

Query: 565 KQEKNKLSHAK---KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           ++ +     A+   + A+  +  KS+FLA +SHEIRTP+  +IG + ++ ++        
Sbjct: 143 RRLEEAAVQAEELARQAQAANIAKSEFLANMSHEIRTPMNGVIGMASLLLSEDLTA---- 198

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
             + Y   I  SG  +L+++N +LD SKIE+G++ L + P S  E V E + L+Q  A  
Sbjct: 199 EQLSYVKVIITSGEALLELINQILDFSKIEAGRLELDYRPFSPRELVQEVVLLLQPQAAA 258

Query: 682 KRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNE---- 735
           + + +    + ++P  +  D   ++Q+ LN++ NAI FT  GG  I +S           
Sbjct: 259 QNLALTCEISPSLPAIVEGDPVRLRQVLLNLVGNAIKFTEVGGVAIELSPAPADPAAPDF 318

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
                V+D+G+G+   +++   + F Q+  S   +  GTGLGL + + +V+   G+  + 
Sbjct: 319 SCHFAVKDSGIGIPAEKIDLLFQRFQQLDGSTCRKYGGTGLGLAICRRLVELMGGEVGVE 378

Query: 796 STPAKGTLIEIIFP 809
           S   KG+      P
Sbjct: 379 SEVGKGSTFWFTVP 392


>gi|255029763|ref|ZP_05301714.1| hypothetical protein LmonL_13124 [Listeria monocytogenes LO28]
          Length = 383

 Score =  296 bits (758), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 81/398 (20%), Positives = 168/398 (42%), Gaps = 29/398 (7%)

Query: 424 FPENMPQNGIEPEDVDTRINKRKM--EIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
             + + +       +  R+ + +   E E  +L S+L   +DG+   +R G ++  N   
Sbjct: 9   GVDEIGELADSFNTLTKRVQEAQAMTEGERRKLSSVLAYMTDGVIATDRRGKVILINTPA 68

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT-EILSLDLRQTLEKITLGSTKEEKLLS 540
            K+     E    +     L+          +  +      R TL+K  +          
Sbjct: 69  EKMLRVKHESANGRSIIDVLDIGDTYQFEDLMEVDGSLTMDRSTLDKPYVLRAN------ 122

Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
             +I ++  F++     +HDI++ ++   +              + DF++ VSHE+RTPL
Sbjct: 123 FSVIQRETGFNNGVIAVLHDITDQEKVDQE--------------RRDFVSNVSHELRTPL 168

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
           T++  + E + +  +          +          ++ +VNDLL +S+++ G+  L   
Sbjct: 169 TSMHSYLEALSDGAW--EDKEIAPRFLEVTQNETERMIRLVNDLLKLSRMDGGREQLEKS 226

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720
            V+  +  +  I   +    ++ I+ +         I  D   V Q+  NI+SNA  ++P
Sbjct: 227 FVNFTDFFNHIIDRFE-MMKKETIMFKRHIPREPVIIEIDEDKVMQVLDNIISNANKYSP 285

Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
            GG+I        + E+ + + D G+G+ + +L      F ++  ++     GTGLGL +
Sbjct: 286 DGGRISFYLKKFED-EIEVSIADEGLGVPDEDLANVFDRFFRVDKARSREMGGTGLGLAI 344

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
           A+ +++A+ G+ +      KGT+I+   P   +  P D
Sbjct: 345 AREVIEAHGGRIWAERNKNKGTIIKFTLP--YSDLPED 380


>gi|160889978|ref|ZP_02070981.1| hypothetical protein BACUNI_02412 [Bacteroides uniformis ATCC 8492]
 gi|270294654|ref|ZP_06200856.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|317481371|ref|ZP_07940439.1| hsp90-like protein [Bacteroides sp. 4_1_36]
 gi|156860366|gb|EDO53797.1| hypothetical protein BACUNI_02412 [Bacteroides uniformis ATCC 8492]
 gi|270276121|gb|EFA21981.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|316902467|gb|EFV24353.1| hsp90-like protein [Bacteroides sp. 4_1_36]
          Length = 497

 Score =  296 bits (758), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 100/508 (19%), Positives = 191/508 (37%), Gaps = 25/508 (4%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
           P++         ++ +  +  P+    +     ++  N   +        + +       
Sbjct: 3   PNVPQEVRIINAISEQLFNSWPVSIIMIDLEDCIWRLNQQVMNELHL--NEYVIGRRITD 60

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
            L       +      + L   D   I        I+  +     +        ++  + 
Sbjct: 61  LLEVVCDKKNVLEDLLLQLRERDVRIIPLDINCF-IRELKSGISFLIQGAMVGIHEDGQL 119

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
           +         ++ R  K  + I + +   I +         + E  ++       +  G 
Sbjct: 120 VRIVLYFRNVLEERTQKHLLNIALSR-TQIFQ------WSFDMEHNLMIIEPRYFEYLGI 172

Query: 488 PVED--ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI-- 543
           P  D  +  + F   +  +    +   L  +                  + K        
Sbjct: 173 PTRDYTLTPEEFAFLIHPDDRKGVFDALA-LQLHGNLYERPVEYRLRRGDGKWEWFEAQS 231

Query: 544 -IIKKLPFSSCYSLTMHDISEW-KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
             + +L       + +   ++  K  +NKL+ A + A++    KS FLA +SHEIRTPL 
Sbjct: 232 TYVGQLTDLPFRIIGICMSTQKYKDTENKLNEALQKAQRSDELKSVFLANMSHEIRTPLN 291

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           AI+GFS  +       L     +E+ + I+++  L++ +++D+LD+SKIES  M  HFE 
Sbjct: 292 AIVGFS-TLLACGDADLSRQEIMEFTSLIEKNSQLLMVLISDILDLSKIESNTMEFHFEK 350

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           VSL+  +    S  Q     K + +     +    I  D   + Q+  N+++NA+ FT  
Sbjct: 351 VSLNGILESIYS-AQKMNLRKGVELLLDLPDRAAVIYTDPTRLGQVVNNLINNAVKFTAE 409

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           G +I I         + + V DTG GM+   L    + F +         +GTGLGL + 
Sbjct: 410 G-RITIGYRLKDFATLEVFVEDTGTGMSEEVLAHIFERFYKGDAF----VQGTGLGLAIC 464

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           + +V+   GK  + ST  KG+   I+ P
Sbjct: 465 RTIVERFHGKIEVASTLGKGSRFAIVLP 492


>gi|94264431|ref|ZP_01288220.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93455121|gb|EAT05343.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 399

 Score =  296 bits (758), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 74/257 (28%), Positives = 130/257 (50%), Gaps = 12/257 (4%)

Query: 561 ISEWKQEKNKLSHAK--KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
           +S  + E+  +   +  + A+  +  KS+FLA +SHEIRTP+  +IG + ++ ++     
Sbjct: 140 VSNRRLEEAAVQAEELARQAQAANIAKSEFLANMSHEIRTPMNGVIGMASLLLSEDLTA- 198

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
                + Y   I  SG  +L+++N +LD SKIE+G++ L + P S  E V E + L+Q  
Sbjct: 199 ---EQLSYVKVIITSGEALLELINQILDFSKIEAGRLELDYRPFSPRELVQEVVLLLQPQ 255

Query: 679 ANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEE 736
           A  + + +    +  IP I   D   ++Q+ LN++ NAI FT  GG  I +S        
Sbjct: 256 AAAQNLALTCEISPGIPAIAEGDPVRLRQVLLNLVGNAIKFTEVGGVAIELSPAPADPAA 315

Query: 737 VILR----VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
                   V+D+G+G+   +++   + F Q+  S   +  GTGLGL + + +V+   G+ 
Sbjct: 316 PEFSCYFAVKDSGIGIPAEKIDLLFQRFQQLDGSTCRKYGGTGLGLAICRRLVELMGGEV 375

Query: 793 YIFSTPAKGTLIEIIFP 809
            + S   KG+      P
Sbjct: 376 GVESEVGKGSTFWFTVP 392


>gi|89895321|ref|YP_518808.1| hypothetical protein DSY2575 [Desulfitobacterium hafniense Y51]
 gi|89334769|dbj|BAE84364.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 601

 Score =  296 bits (758), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 82/364 (22%), Positives = 148/364 (40%), Gaps = 34/364 (9%)

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
           +  E   L  I+E  SDG+ +++ EG IL TN     L            +     +   
Sbjct: 270 LSEERNLLLGIVEGISDGVIMLDGEGEILYTNEPAKAL------------WQGSGSEEES 317

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISEWK 565
           S     L   L   +        +    + ++L + +   +       Y   + DI+   
Sbjct: 318 SERKETLMAFLRGFMEDVEIDKKIHFNLDTQVLQVAMATTQFEDGKQGYVAVLRDITASL 377

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + + +              + DF+A V+HE+RTPL  I G+ E I++   G +      E
Sbjct: 378 RAEKE--------------RRDFMASVTHELRTPLHLIQGYLEAIQD---GVIAKEEQTE 420

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           + + +      +  +V +L ++ + ES K N   + + L   + E     Q  A+E  I 
Sbjct: 421 HIDLVLEEAKRLAKLVMELQELDRFESWK-NFEKKEIDLAGFIQELGYRFQGRADELGIH 479

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           ++      +  I A+   + Q+ +N++ NA   TP G  + I     S E +   V D G
Sbjct: 480 LQMDNGKGV--IHANRDRLLQVFINLIENAFRHTPEGKSVYIRI-IDSEEHIQFNVEDQG 536

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
            G+    L      F ++  S+  +  G GLGL +   +V+A+ G+  + S   KGT  +
Sbjct: 537 EGIPPQALPHIFDRFYRVDKSRSRKEGGMGLGLSIVMLIVEAHNGEIKVESEVGKGTTFK 596

Query: 806 IIFP 809
           +I P
Sbjct: 597 VILP 600


>gi|297570503|ref|YP_003691847.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296926418|gb|ADH87228.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 898

 Score =  296 bits (758), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 82/570 (14%), Positives = 181/570 (31%), Gaps = 50/570 (8%)

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH-PSLSAYFDEGENLTPETVDK 328
              E         + ++     +      + +            A     E       + 
Sbjct: 219 SRDEIGLLAAAFNHLQESVARQINELEIRNRQLHRLSEENSRQLASLQVSEARYRTIFNA 278

Query: 329 CPIPFFVYSH--GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
                F++    G +   N + L +  +   + +     L+    +  +      +    
Sbjct: 279 PSDAIFIHESPSGRITDVNRAMLAMYGFSYEEAL----SLTVADVSANVPPYTMEEAGRK 334

Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
             +           H  + N E           +   F +      +  +  D ++ ++ 
Sbjct: 335 ITAAINQGPQRFEWHARRKNGE---LFWSEVSLRLASFNDQQFVIAVVRDIHDRKMAEQA 391

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF---TVFLEQ 503
           +  E  +L   L++  DG+   +R+G I+  N   S+L G+  E+   +P       + +
Sbjct: 392 LANEKERLAITLQSIGDGVITTDRQGRIMLLNNLASQLTGWSAEEAAGRPLPEVFQIINE 451

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMH 559
            T     + + ++L+      LE  T+   K+     +      +           L   
Sbjct: 452 RTGESCQNPVDQVLASRRTIALENHTVLIGKDGSRRPIADSGAPIHDQEGEIIGVVLVFR 511

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE---VIKNQRFG 616
           D++E ++ + +L   KK+            A ++H+    LTA++G  +    +  +   
Sbjct: 512 DMTEHQRLEKELLKVKKL-----ESVGLLAAGIAHDFNNLLTAVMGNIDLARFLLKKEQP 566

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
                + +       ++G     +   LL  ++   G   +      L   V+       
Sbjct: 567 --DAEQLLNLLADSKKAGLRAQGLTQQLLTFAR---GGDPIRK----LASLVAVIKDSAA 617

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT------ 730
                  +      A+++     D   + Q+  NI+ NA       G+++I         
Sbjct: 618 FVLRGSGVSCEYQIADDLWLAEIDQGQISQVIQNIVLNARQAMGENGRLLIGACNLAENE 677

Query: 731 ----HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
                   + V + + D G G+   + E    P+         +  G+GLGL +  ++V 
Sbjct: 678 APGPRRPGKFVAITISDNGPGIPQKDQELIFDPYYTT------KENGSGLGLAICHSIVS 731

Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
            + G   I S P  GT   I+ P    S P
Sbjct: 732 KHDGYIEIASEPGTGTTFTILLPASRQSLP 761



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 42/406 (10%), Positives = 97/406 (23%), Gaps = 26/406 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH----IGDLLKRQNT-- 142
            D  G +  ++    +  G  A +  G  L +V  I++          +  +L  + T  
Sbjct: 413 TDRQGRIMLLNNLASQLTGWSAEEAAGRPLPEVFQIINERTGESCQNPVDQVLASRRTIA 472

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
               T L   +G+    PI  +  PI+ +  E  G     +               ++ K
Sbjct: 473 LENHTVLIGKDGS--RRPIADSGAPIHDQEGEIIGV--VLVFRDMTEHQRLEKELLKVKK 528

Query: 203 KFS-HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
             S  L      H         + +       L+ +   +                   L
Sbjct: 529 LESVGLLAAGIAHDFNNLLTAVMGNIDLARFLLKKEQPDAEQLLNLLADSKKAGLRAQGL 588

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
                +     +    +       K     +   S  S EY    +         +   +
Sbjct: 589 TQQLLTFARGGDPIRKLASLVAVIKDSAAFVLRGSGVSCEYQIADDLWLAEIDQGQISQV 648

Query: 322 TPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
               V              +   N +       +                 P+       
Sbjct: 649 IQNIVLNARQAMGENGRLLIGACNLAENEAPGPRRPGKFVAITISDNGPGIPQKDQELIF 708

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
            P    + + + +   A  H+I    +  + +   P                 P      
Sbjct: 709 DPYYTTKENGSGL-GLAICHSIVSKHDGYIEIASEPGTGTTFTILLPASRQSLPPTKPAT 767

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
             +++ +                I +++ E ++    +   +  G+
Sbjct: 768 APEQQRQAR--------------ILVMDDEEMVRRVLQQTLEHLGH 799



 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/338 (7%), Positives = 72/338 (21%), Gaps = 22/338 (6%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD---ILHIDPNNHIGDLLKRQNTWYGKT 147
             G + +++  +    G    + + + + DVS       ++           Q     + 
Sbjct: 289 PSGRITDVNRAMLAMYGFSYEEALSLTVADVSANVPPYTMEEAGRKITAAINQGPQRFEW 348

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK-RLDKKFSH 206
                 G   +  + L       +           +V                 ++    
Sbjct: 349 HARRKNGELFWSEVSLRLASFNDQQFVI------AVVRDIHDRKMAEQALANEKERLAIT 402

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY--------YAHKDDVLKTEK 258
           L  I  G  + +++   +              + ++                +       
Sbjct: 403 LQSIGDGVITTDRQGRIMLLNNLASQLTGWSAEEAAGRPLPEVFQIINERTGESCQNPVD 462

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
             L +    +L         + ++         + +   E    +      +     ++ 
Sbjct: 463 QVLASRRTIALENHTVLIGKDGSRRPIADSGAPIHDQEGEIIGVVLVFRDMTEHQRLEKE 522

Query: 319 ENLTPET--VDKCPIPFFVY--SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
                +   V            +       N         K   D E    L        
Sbjct: 523 LLKVKKLESVGLLAAGIAHDFNNLLTAVMGNIDLARFLLKKEQPDAEQLLNLLADSKKAG 582

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
           L      + ++ +      I   A L  +  +    + 
Sbjct: 583 LRAQGLTQQLLTFARGGDPIRKLASLVAVIKDSAAFVL 620


>gi|71906100|ref|YP_283687.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase A, N-terminal
           [Dechloromonas aromatica RCB]
 gi|71845721|gb|AAZ45217.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal
           [Dechloromonas aromatica RCB]
          Length = 835

 Score =  296 bits (758), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 85/413 (20%), Positives = 161/413 (38%), Gaps = 28/413 (6%)

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468
            +  +  +    A      +    +          +++++     L S ++   +   I 
Sbjct: 278 RAHRVVIVSAASAISLAIVILLLLLFRALSLRADMEKRLQDSQAMLRSAVDTIGEAFVIY 337

Query: 469 NREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLE-QNTPSVMNHYLTE-----ILSLDL 521
           ++   +   N      +    + ++  K F   +            +          L +
Sbjct: 338 DQNDRLAYCNEQYRAYYPTSADLLVPGKTFEEIIRAGAERGQYPEAIGRIDAWVAERLAV 397

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH-DISEWKQEKNKLSHAKKIAEK 580
            ++     + +  + + L +R           + +    DI+        +  AK+ AE 
Sbjct: 398 HRSGNSDLIQALDDGRWLRIREHKTP----EGFIVGFRIDIT-------AVYAAKEAAEA 446

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            ++ KS+FLA +SHEIRTP+  I+G ++++       L      EYA  I  SG  +L +
Sbjct: 447 ANAAKSNFLAMMSHEIRTPMNGILGMAQLLL---LPDLSKEEGNEYARTILNSGQTLLTL 503

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN-NIPRILA 699
           +ND+LD SKIE+GK+          + V E ++L      EK I+I T        R  A
Sbjct: 504 LNDILDFSKIEAGKLEFSAVAFDPAQLVRETVTLFTGAVREKGIVIDTDCQGTGGARYRA 563

Query: 700 DLRSVKQIALNILSNAIHFTPSGGQIIISTTH--TSNEE--VILRVRDTGVGMTNYELEK 755
           D   ++Q+  N++SNA+ FT  G  + +             +   V D+G+G+   +   
Sbjct: 564 DSTRLRQMLANLVSNAVKFTTQGF-VRVDAREINRDRGTALLEFSVSDSGIGIPVDKQSL 622

Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
             KPF Q  +S      GTGLGL + + + +   G+  + S   +G       
Sbjct: 623 LFKPFSQADSSTTREYGGTGLGLSIVRRLAEMMGGEVGVESESGQGARFWFRI 675


>gi|186685420|ref|YP_001868616.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186467872|gb|ACC83673.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 1235

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 100/472 (21%), Positives = 180/472 (38%), Gaps = 118/472 (25%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL-------------------- 484
             +     +L   LEA   G+ II+ EG     N    ++                    
Sbjct: 443 EALSESQSRLTQFLEAMPVGVFIIDAEGKPYYINHIGQQILDRGAMSKDKPFSTRGCANG 502

Query: 485 FGYPVE--------------------------DILRKPFTVFLE------QNTPSVMNHY 512
           FG   +                          ++  +  +   +                
Sbjct: 503 FGGSQDARGLANATLTTGTAKTATPSPLRVYAEVSGEQLSEVYQAYLAGTDRLYPSDRLP 562

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEK 568
           +   L  +  +  +       K   ++ + ++ K +   S        T  DI++ KQ +
Sbjct: 563 ILRALLGESTRIDDMEVRHIDK---IIPIEVLGKPIYDESGNLTFAMATFFDITQRKQAE 619

Query: 569 --------------------------------NKLSHAKKIAEKESSH------------ 584
                                            +L  ++KIA +E               
Sbjct: 620 NLLAEYNRTLEAQVKKRTEEFQQVIEQLQATQEELIQSQKIAAQEQQAAVREAARSAAAN 679

Query: 585 --KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
             KS+FLA +SHE+RTPL AI+GF++V+         +  + E    I+R+G  +L+++N
Sbjct: 680 LAKSEFLANMSHELRTPLNAILGFTQVMSQDYS---LSSEHQENLAIINRAGEHLLNLIN 736

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADL 701
           D+L++SKIE+G++ L+     L   ++    ++ L A  K + +   +A++IP+ I  D 
Sbjct: 737 DILEMSKIEAGRITLNRSSFDLIHLLNNLEEMLYLRAASKSLQLVFEYAHDIPQYIETDE 796

Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-------VILRVRDTGVGMTNYELE 754
             + Q+ LN+L NAI FT  GG + +       EE       +   V+DTG G+T  E+ 
Sbjct: 797 NKLFQVLLNLLGNAIKFTDIGG-VTLRLRWEQEEENLSYNPRLFFEVQDTGCGITPQEIG 855

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
              + F Q    ++ + +GTGLGL +++  V    G   + STP  G+    
Sbjct: 856 LLFEAFEQTEIGRKSQ-QGTGLGLAISRKYVQLMGGDITVSSTPGMGSTFAF 906


>gi|116748273|ref|YP_844960.1| multi-sensor signal transduction histidine kinase [Syntrophobacter
           fumaroxidans MPOB]
 gi|116697337|gb|ABK16525.1| PAS/PAC sensor hybrid histidine kinase [Syntrophobacter
           fumaroxidans MPOB]
          Length = 567

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 85/551 (15%), Positives = 189/551 (34%), Gaps = 43/551 (7%)

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKY 354
            +                 Y      +  +   K      +     +       L  + +
Sbjct: 23  ETSRLGGPDGLARRLEPIGYSWRRPAVEEKMTGKSWKVVLIDDDPEIRETIGGVLQDSGH 82

Query: 355 KSVDDIEIAGGLS-------TLLDAPKLSDNNAIKPVMLYRSDRTCI----------AAS 397
           + +   +   G+         ++             ++                      
Sbjct: 83  EVLTAGDGDAGMELCERQSPDIVITDIRHPGIDGFEILRRIKTGRPDVEVIVMTVLSEIE 142

Query: 398 ARLHTIQWNRENSL-------AMTFIPFEKANQFPENMPQNGIEPEDVDT-RINKRKMEI 449
             +  +  +  + +       A+T       ++               +       ++  
Sbjct: 143 LAIQALHLDASDFITKPIANDALTVAVKRAKDRIATRKELGDYTALIEERWMQTAEELAK 202

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP-FTVFLEQNTPSV 508
                 S++E++ DGIA  + +G  +  NR++ ++ GY   +++ K   + F        
Sbjct: 203 TFDMQKSLIESSIDGIAAFDSDGKTVIFNRSMEQILGYERGNVIGKMYLSQFFSPGEAEK 262

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL---PFSSCYSLTMHDISE-W 564
               L        R+     ++   K    +  ++    +      +   +   D  E  
Sbjct: 263 FEQKLKSEEYGGKRRLFLFESILVDKSGGKVPCQLSAAAMFQKEEETGLVVFFRDQREIR 322

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS----EVIKNQRFGPLGN 620
           K  +     A+ + + +        A V HEI  PL  I+ ++    +++          
Sbjct: 323 KLMQEAADQARLLQQDKMISLGRLAASVVHEINNPLAGILNYARLMTKMLGKGMLASESV 382

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
            ++  Y + ++   +    IV++LL  S+    +  L   PV ++E ++++I+L +   +
Sbjct: 383 TKFQGYLSLMESELSRCSKIVSNLLSFSR----QSTLESAPVKVNELIAKSITLCEHKLS 438

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-VIL 739
            + I I T  +   P I  D   ++Q  +N++ NA+    +GG + + +     ++ V +
Sbjct: 439 LQNIRIDTVLSPENPVIPGDFNQLEQCLINLIFNAMDAMETGGVLTLESALIPAQKIVEI 498

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
           RVRDTG G+   +L     PF         +G+G GLGL     ++D + G   + S P 
Sbjct: 499 RVRDTGCGIAKEDLIYIFDPFFTTKK----QGKGLGLGLSTTYGIIDRHHGAVSVESEPG 554

Query: 800 KGTLIEIIFPL 810
           KGT+  I  PL
Sbjct: 555 KGTVFTIKLPL 565



 Score = 40.8 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 20/132 (15%), Positives = 40/132 (30%), Gaps = 6/132 (4%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D+ G     +  + + +G     +IG     +S              LK +     +   
Sbjct: 222 DSDGKTVIFNRSMEQILGYERGNVIGKMY--LSQFFSPGEAEKFEQKLKSEEYGGKRRLF 279

Query: 150 W----PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
                 ++ +   VP  L+A  ++ +  E      F      R      A   RL ++  
Sbjct: 280 LFESILVDKSGGKVPCQLSAAAMFQKEEETGLVVFFRDQREIRKLMQEAADQARLLQQDK 339

Query: 206 HLHEIKKGHSSV 217
            +   +   S V
Sbjct: 340 MISLGRLAASVV 351


>gi|56752287|ref|YP_172988.1| two-component system sensory histidine kinase [Synechococcus
           elongatus PCC 6301]
          Length = 937

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 82/321 (25%), Positives = 152/321 (47%), Gaps = 10/321 (3%)

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
               L                     +I +       E   L        ++LR ++  L
Sbjct: 350 WAAHLGMRIEQLAHAADAMASGQLQQQIPTSGRD---ELTVLAQAFNRMAVTLRELLVSL 406

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                        +  ++  ++L  A++ AE  +  KS FLA +SHE+RTPL AIIG+SE
Sbjct: 407 EH-----RVQERTAALRETNDRLEQAREQAEAANQAKSAFLANMSHELRTPLNAIIGYSE 461

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
           ++  +    +     +     I+ +G  +L+++N +LD+SKIE+G+M L+ E  SL E +
Sbjct: 462 MMMEEAEDGIEVEELLPDFRKINNAGKHLLELINSILDLSKIEAGRMELYLESFSLPELI 521

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
           +   S+++    + +  +      +I  + AD+  ++Q  LN+LSNA  FT  G  I + 
Sbjct: 522 NGVKSIIKPLIEKNQNQLLVDCPADIGLMTADVTKLRQTLLNLLSNASKFTHQG-TIQLQ 580

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                 ++V+ +V D+G+GM+  ++++  + F Q  +S   +  GTGLGL +++  ++  
Sbjct: 581 VAAQ-GDQVVFKVVDSGIGMSPEQIDRIFEAFAQADDSTTRKFGGTGLGLSISRHFIEMM 639

Query: 789 MGKFYIFSTPAKGTLIEIIFP 809
            GK  + S   +G+   I  P
Sbjct: 640 GGKITVESVLGEGSTFTITLP 660


>gi|253988310|ref|YP_003039666.1| signal transduction histidine-protein kinase [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253779760|emb|CAQ82921.1| signal transduction histidine-protein kinase [Photorhabdus
           asymbiotica]
          Length = 776

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 80/243 (32%), Positives = 127/243 (52%), Gaps = 8/243 (3%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L+ AKK A++ +  K++FLA +SHE+RTPL  +IGF+     Q        +  EY + 
Sbjct: 277 ELAIAKKRAQEAARIKTEFLANMSHELRTPLNGVIGFT----RQTLKTSLTIQQTEYLHI 332

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I+RS N +L+I+ND+LD S++E+ K+ L   P  L E + E I L+   A  K I +  S
Sbjct: 333 IERSANHLLNIINDILDFSRLEADKLILENIPFLLQETIDEVIVLLTPSAKNKNIQLTHS 392

Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTG 745
               IP  ++ D   ++QI  N++ NAI FT  G  +I I+     + ++ L   V DTG
Sbjct: 393 IDPQIPNLVIGDPMRLQQILTNLIGNAIKFTEQGSVKIDINLVQQQHHKINLAMTVSDTG 452

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G++  +     + F Q   S   R  GTGLGL + + ++    G     S   KG++  
Sbjct: 453 IGISPEQQPHLFQAFHQADASISRRYGGTGLGLVITQKLIREMGGNISFTSEQGKGSVFH 512

Query: 806 IIF 808
              
Sbjct: 513 FDL 515


>gi|170079238|ref|YP_001735876.1| PAS domain-containing protein [Synechococcus sp. PCC 7002]
 gi|169886907|gb|ACB00621.1| PAS domain S-box protein [Synechococcus sp. PCC 7002]
          Length = 1430

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 111/782 (14%), Positives = 258/782 (32%), Gaps = 84/782 (10%)

Query: 95   LKEISEELPKTIGNYAFKMI--GMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPI 152
            +  +S    K  G     ++  G          H          +++   +  +  +   
Sbjct: 560  VIYVSPNYEKIWGLSCQSLLDDGTSWLAAVHPDHEGQIQRAIAQMQQGQNFDEEYRIVRP 619

Query: 153  EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212
            +G  +   I   +  IY  N +    R  G++       +     +  + +   + +   
Sbjct: 620  DG--VVRWIYARSFKIYDPNTQQL-LRHVGVMTDVTERKEAELKLQSQEARLRTIFDQAA 676

Query: 213  GHSSVEKEKYDIFSQQSPPPHL---RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
                                 +             +   H +D+    +         + 
Sbjct: 677  LGIVQIDRTNHFSLVNQAFCEICGYSEAELQQFTWQELTHPEDICICHEARAKLDRHQAA 736

Query: 270  PE--QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS----LSAYFDEGENLTP 323
                ++ +     +    K     + ++  +    L+     S     +    E ++   
Sbjct: 737  SAVLEKRYRHRLGHFIWVKVICSYIYDDQGQPEYLLTIIEDISEYKQAAIALVESQHRYQ 796

Query: 324  ETVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
            + VD  P   + YS      + +     +  Y+    ++        +    + D +   
Sbjct: 797  KMVDGIPAIIYQYSPQRGGLFYSSQVEQILGYEVQRLLDEPELWHRSIHPEDVVDVD--- 853

Query: 383  PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             V+             R   I+    N        F        ++  +G   +  + + 
Sbjct: 854  QVLQTLHTGKNFELEYR---IRDATGNWHWFYDCSFNIHAVDGGDLVIDGFALDITERKN 910

Query: 443  NKRKMEIEVMQLCSILEATSDGIAIINREGIIL----------------------STNRA 480
                +   + +L ++L   S  + ++  E  +                         N +
Sbjct: 911  FDEVLRHRL-KLETMLAEMSH-LMVVEAELNLEKVLALLGRTFQADRVSVMISQMEAN-S 967

Query: 481  VSKLFGYPVEDILRKP----------FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530
            V +L  +     L             +  +L+      +  +  +    +  +  + +  
Sbjct: 968  VERLVSWHAGPHLDLDENFNTIDLSAYPWWLDHWQQQKVILFDRQHPLPETAKPEQTLVA 1027

Query: 531  GST-KEEKLLSLRIIIKK-----------------LPFSSCYSLTMHDI----SEWKQEK 568
                K    + ++    +                     +       ++     + +Q  
Sbjct: 1028 YLDLKAVLWVPIQDATGQPWGYIACSSTAVDHLLWSKEDADILAIAGNLIYNYYQRQQAN 1087

Query: 569  NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
             +L  AK++AE  +  K+ FL  +SHE+RTPL A++GF+++++        +    EY +
Sbjct: 1088 KQLELAKELAEAANHAKNQFLTSMSHELRTPLNAVLGFTQIMERSPDLSTDH---QEYLS 1144

Query: 629  YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
             I RSG  +L ++ND+L+++K E G + L+    +L + + +   +  L    K I +  
Sbjct: 1145 IIHRSGKHLLALLNDILNLAKFEKGTLQLNPNLFNLHDLLDDLAQMYALEIQHKNIQLDI 1204

Query: 689  SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRVRDTGV 746
             +   +PR I AD   +  + L++L+NA+ FT SG  Q+ + T   +   +   V DTG+
Sbjct: 1205 HWDEQVPRYINADQAKLHSVLLHLLNNALKFTDSGCVQLTVKTLAQNPLRLRFSVTDTGI 1264

Query: 747  GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
            G+   +  +    F ++       G+G+GLGL L++  V+   G+  + S P  G+    
Sbjct: 1265 GIAETDFTRLFDNFVKLEAGD-RMGQGSGLGLALSQKFVNLMGGEIVVSSQPGVGSCFSF 1323

Query: 807  IF 808
              
Sbjct: 1324 EL 1325



 Score =  150 bits (380), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 58/528 (10%), Positives = 151/528 (28%), Gaps = 46/528 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL-LKRQNTWYGKT 147
           +DA G +  +S+   + +G    ++IG  + D    +       I  L L  Q +     
Sbjct: 282 MDATGQILAVSDRWLQVLGYERRQVIGCNVTDFLTPVSRQKAQQILLLTLTTQGSVEDDA 341

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRAL----GKRLDKK 203
             +  +  ++ + ++LAA+   + +      R   ++      N            L+  
Sbjct: 342 YQFIKKNGDI-LEVELAAVCEQTNH----HSRLLVVLTDVTARNHLAQQVNRYQTHLEDL 396

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE------------------ 245
                +      +   +   I         ++      S                     
Sbjct: 397 IEQRTQALAASQARLAQAQAIAQIGVWEWDVQANQTYWSPETFQIFGFAPGEIQPNAETF 456

Query: 246 -YYAHKDDV-LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES---- 299
               H DD          + + +S    +    T +      K Y     +   +     
Sbjct: 457 FERVHPDDRDRIRTNIENIFTGQSLPSSEYRIITPDGEVRYLKDYHELKLDKQGQPSFLW 516

Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG--NLFYANPSFLLLTKYKSV 357
                            + E    E V+     F++ S     + Y +P++  +      
Sbjct: 517 GAVQDITKMQQTLNALQKSETRFRELVEHIDEAFWINSPDPTEVIYVSPNYEKIWGLSCQ 576

Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
             ++   G S L     +  ++  +        +           ++ +           
Sbjct: 577 SLLD--DGTSWL---AAVHPDHEGQIQRAIAQMQQGQNFDEEYRIVRPDGVVRWIYARSF 631

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
                   + +   G+  +  + +  + K++ +  +L +I +  + GI  I+R       
Sbjct: 632 KIYDPNTQQLLRHVGVMTDVTERKEAELKLQSQEARLRTIFDQAALGIVQIDRTNHFSLV 691

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
           N+A  ++ GY   ++ +  +          + +    ++        +        +   
Sbjct: 692 NQAFCEICGYSEAELQQFTWQELTHPEDICICHEARAKLDRHQAASAV-LEKRYRHRLGH 750

Query: 538 LLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKE 581
            + +++I   +             + DISE+KQ    L  ++   +K 
Sbjct: 751 FIWVKVICSYIYDDQGQPEYLLTIIEDISEYKQAAIALVESQHRYQKM 798



 Score =  116 bits (291), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 56/533 (10%), Positives = 131/533 (24%), Gaps = 48/533 (9%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMI--GMRLCDVSDILHIDPNNHIGDLLKRQNTW 143
            W  D        S E  +  G    ++        +       D      + +    + 
Sbjct: 422 VWEWDVQANQTYWSPETFQIFGFAPGEIQPNAETFFERVHPDDRDRIRTNIENIFTGQSL 481

Query: 144 -YGKTTLWPIEGTNLYV--PIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
              +  +   +G   Y+    +L       +  + S    +G V             ++ 
Sbjct: 482 PSSEYRIITPDGEVRYLKDYHELKL----DKQGQPSFL--WGAVQDITKMQQTLNALQKS 535

Query: 201 DKKFSHLHEIKKGHSSVEKEK-----------YDIFSQQSPPPHLRMKNKVSSLTEYYAH 249
           + +F  L E       +                 I+            + ++++   +  
Sbjct: 536 ETRFRELVEHIDEAFWINSPDPTEVIYVSPNYEKIWGLSCQSLLDDGTSWLAAVHPDHEG 595

Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
           +      +       +E     + D     +   + K Y    Q   +            
Sbjct: 596 QIQRAIAQMQQGQNFDEEYRIVRPDGVVRWIYARSFKIYDPNTQQLLRHVGVMTDVTERK 655

Query: 310 SLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
                    E       D+  +    +    +    N +F  +  Y   +       L  
Sbjct: 656 EAELKLQSQEARLRTIFDQAALGIVQIDRTNHFSLVNQAFCEICGYSEAE-------LQQ 708

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH-TIQWNRENSLAMTFIPFEKANQFPEN 427
                     +               AASA L    +    + + +  I     +   + 
Sbjct: 709 FTWQELTHPEDICICHEARAKLDRHQAASAVLEKRYRHRLGHFIWVKVICSYIYDDQGQP 768

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
                I  +  + +     +     +   +++     I   + +   L  +  V ++ GY
Sbjct: 769 EYLLTIIEDISEYKQAAIALVESQHRYQKMVDGIPAIIYQYSPQRGGLFYSSQVEQILGY 828

Query: 488 PVEDILRKP--FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
            V+ +L +P  +   +       ++  L  + +       E                   
Sbjct: 829 EVQRLLDEPELWHRSIHPEDVVDVDQVLQTLHTGKN---FELEYRIRDATGNWHWFYDCS 885

Query: 546 KKLPFSSCYSLTMH----DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
             +       L +     DI+E K     L H  K+           LA +SH
Sbjct: 886 FNIHAVDGGDLVIDGFALDITERKNFDEVLRHRLKLET--------MLAEMSH 930



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/354 (10%), Positives = 104/354 (29%), Gaps = 12/354 (3%)

Query: 242 SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301
           +   Y     +VL+   +  L  E +   E      ++   +++      +         
Sbjct: 59  APLPYLIDHAEVLQRWPWIGLADEVALQDEMLRLGVLDCFLWSELTGPLLVHTLRVALRT 118

Query: 302 YLSHRNHPSLSAYFDEGE-NLTPETVDKCPIPFFVYSHG---NLFYANPSFLLLTKYKSV 357
            L H       A   + + +     +   P   +   +    +  Y + +   L  Y + 
Sbjct: 119 MLGHGQGTLSPAPLGDFQGDRLQTLIQNIPGTVYRCLNTAEWHGIYFSETIEQLVGYPAA 178

Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
           D +         L  P        + V     ++   A   RL            +    
Sbjct: 179 DFLPGGDRHYASLIHPN-DRAFVRQIVERKVQEKKPFAFEYRLK---HRDGTVRWVDERG 234

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
               +     +  +G+  +  + +    ++  + +      E T   +  ++  G IL+ 
Sbjct: 235 QGVFDDQGNLLWLDGVIIDISEKKAIALELNQQAIHY---YEKTPAMLHSMDATGQILAV 291

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH-YLTEILSLDLRQTLEKITLGSTKEE 536
           +    ++ GY    ++    T FL   +        L  + +    +      +    + 
Sbjct: 292 SDRWLQVLGYERRQVIGCNVTDFLTPVSRQKAQQILLLTLTTQGSVEDDAYQFIKKNGDI 351

Query: 537 KLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
             + L  + ++    S   + + D++       +++  +   E     ++  LA
Sbjct: 352 LEVELAAVCEQTNHHSRLLVVLTDVTARNHLAQQVNRYQTHLEDLIEQRTQALA 405


>gi|294499108|ref|YP_003562808.1| sporulation kinase KinA [Bacillus megaterium QM B1551]
 gi|294349045|gb|ADE69374.1| sporulation kinase KinA [Bacillus megaterium QM B1551]
          Length = 574

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 88/498 (17%), Positives = 184/498 (36%), Gaps = 35/498 (7%)

Query: 315 FDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
            ++ E + P           V   G     NP+F     +   +  +    +        
Sbjct: 106 QEKKEQIQPFIYHNADAVAVVDLEGKTLQVNPAFENTFGWTFEEIYQKPLPIIPSFL--- 162

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
                 +  +                     +    + ++   F   N     +    + 
Sbjct: 163 ---KEPVCELHKTIQSGESKT-EFETVRQHKDGH-LINVSVTLFRVENMNDWPLCIAFVY 217

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDIL 493
            +    +  +  ++    +  S++E + + I +   EG I   N A +K  GY   +D+L
Sbjct: 218 RDITSRKQAETALKESEERYRSLIELSPEAIIVH-SEGKIDYINPAGAKALGYKSPQDVL 276

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII--IKKLPFS 551
                 F+  +   V+   +  + + +    L++      K+   +    I         
Sbjct: 277 GACVYQFVHPDYYDVVKQRIYRMKTENKSVDLQEEKFI-HKDGHTIDAETIAFPIPYMGK 335

Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
               +   DI+E K+ +  L         + S      A ++HEIR PLTA+ GF +++K
Sbjct: 336 QAIQVLFRDITERKKTEKLL-----RESAQLSLVGQLAAGIAHEIRNPLTAVKGFMQLLK 390

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
                P        Y   I+   + +  I ++ L ++K ++           + + +   
Sbjct: 391 ETSGQPY-------YVEMINHELDRIELITDEFLSLAKPQAKTYRDKH----VQDILENT 439

Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
           + L ++    ++I ++     ++P +L +   +KQ+  NI  NA+   PSGG + I    
Sbjct: 440 LKLAEVQGITEKIHVKKEIDLHLPLVLCEENQLKQVFSNIFKNAVESMPSGGTVTIQLKR 499

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
            + E +++R  D G G+T   ++   KPF         + +GTGLGL +   ++  + G+
Sbjct: 500 FNQENLVVRFSDEGPGITQERMQHLGKPFY------STKEKGTGLGLMVCYKIIREHRGE 553

Query: 792 FYIFSTPAKGTLIEIIFP 809
               S   KGT ++I+ P
Sbjct: 554 INFVSELGKGTTVDILLP 571



 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/279 (12%), Positives = 82/279 (29%), Gaps = 22/279 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG-KT 147
           +D  G   +++     T G    ++    L  +      +P   +   ++   +    +T
Sbjct: 126 VDLEGKTLQVNPAFENTFGWTFEEIYQKPLP-IIPSFLKEPVCELHKTIQSGESKTEFET 184

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIV-----HVNRVDNDPRALGKRLDK 202
                +G  + V + L                 + +                   K  ++
Sbjct: 185 VRQHKDGHLINVSVTLF---------RVENMNDWPLCIAFVYRDITSRKQAETALKESEE 235

Query: 203 KFSHLHEIKKGHSSVEKEK---YDIFSQQSPPPHLRMKNKVSSLTEYYAHKD--DVLKTE 257
           ++  L E+      V  E    Y   +      +   ++ + +    + H D  DV+K  
Sbjct: 236 RYRSLIELSPEAIIVHSEGKIDYINPAGAKALGYKSPQDVLGACVYQFVHPDYYDVVKQR 295

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
            Y + T  +S   ++E F   + +    +     +    K++ + L              
Sbjct: 296 IYRMKTENKSVDLQEEKFIHKDGHTIDAETIAFPIPYMGKQAIQVLFRDITERKKTEKLL 355

Query: 318 GENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKS 356
            E+     V +       +   N   A   F+ L K  S
Sbjct: 356 RESAQLSLVGQLAAGIA-HEIRNPLTAVKGFMQLLKETS 393


>gi|260894821|ref|ZP_05903317.1| histidine kinase [Vibrio parahaemolyticus Peru-466]
 gi|308089386|gb|EFO39081.1| histidine kinase [Vibrio parahaemolyticus Peru-466]
          Length = 632

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 73/260 (28%), Positives = 128/260 (49%), Gaps = 8/260 (3%)

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
             + + ++ + +L   +  AE  +  KS+FLA +SHEIRTP   IIG + ++ + +    
Sbjct: 218 RSVQKVREHQAELEAERDKAEVANRKKSEFLATMSHEIRTPTNGIIGVASLLSDTKL--- 274

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
            +P+  E+   ID S   ++ I++D+LD SK+E+GK+ L  E     + + + ISL  + 
Sbjct: 275 -DPQQKEFVEIIDNSSQSLMTIIDDILDFSKVEAGKVELASETYHFRQLLDDVISLHTVK 333

Query: 679 ANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQ---IIISTTHTSN 734
           A +K + + +     +P  +  D   +KQ+  N+LSNA+ FT  G     + +   +   
Sbjct: 334 AQQKNLQLLSDIDPKLPAEVQGDEGRLKQVLNNLLSNAVKFTERGHVKLLVSLHEQNNDI 393

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
            +V  RV D+G+G+     +   + F Q   S   +  GTGLGL +   +V    G   +
Sbjct: 394 AQVRFRVVDSGIGIAKEHQQAVFERFQQADGSTTRKYGGTGLGLAICAQLVHIMGGDIKL 453

Query: 795 FSTPAKGTLIEIIFPLYDTS 814
            S    G+  +   PL   S
Sbjct: 454 TSELGLGSCFDFTIPLTVVS 473


>gi|153217334|ref|ZP_01951085.1| sensor histidine kinase LuxQ [Vibrio cholerae 1587]
 gi|124113650|gb|EAY32470.1| sensor histidine kinase LuxQ [Vibrio cholerae 1587]
          Length = 834

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 83/377 (22%), Positives = 162/377 (42%), Gaps = 21/377 (5%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           R++  +  Q   +         + N  G ++  N +    F              FL + 
Sbjct: 327 RRLANKEKQFEDLFNFALSPTMLWNTSGRLIRMNPSAQIQFLREDAQ------NHFLFEI 380

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT-MHDISE 563
               +   +T+    D    +         + ++    +    +       +T   DI+ 
Sbjct: 381 LERQLLPTITKAAQGDNPSDVTTEV-----DGRVYRWNLSPIMVEGQIISIITQGQDITT 435

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + + +   A++ AE+ +  +++FLA++SHE+RTPL  ++G S+++K        N   
Sbjct: 436 IAEAEKQSQAARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRTPL----NDEQ 491

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            E+   +  SG  +L ++ND+LD S++E GK  +      L E V     + +   NEK 
Sbjct: 492 REHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKNEFRLKELVCAIDRIYRPLCNEKG 551

Query: 684 ILIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EVIL 739
           + +  +        + +D   + QI  N+L+NAI FT  G  I +       +   ++++
Sbjct: 552 LELVVNSNITTAAIVRSDQIRINQILFNLLNNAIKFTHQGS-IRVELQLIEGDPLAQLVI 610

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
           +V DTG+G+   +L    +PF Q  ++      G+GLGL +  ++V+   G+ ++ S   
Sbjct: 611 QVVDTGIGIREQDLTVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHVSSEYG 670

Query: 800 KGTLIEIIFPLYDTSHP 816
            GT  EI  P+     P
Sbjct: 671 IGTRFEIQLPIELVERP 687


>gi|307265090|ref|ZP_07546650.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|326390846|ref|ZP_08212398.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter ethanolicus JW 200]
 gi|306919888|gb|EFN50102.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|325993105|gb|EGD51545.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 470

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 61/237 (25%), Positives = 122/237 (51%), Gaps = 6/237 (2%)

Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
             K  E+    + DF+A VSHE+R+PLT+I G+ + I +   G +   +  +Y   + + 
Sbjct: 237 MAKELEQLEDMRKDFVANVSHELRSPLTSIQGYIDGILD---GTIPKEKACDYLKIVQKE 293

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693
              +  ++ND L+++K+ESG+  L+     ++E +  A+   +    EK + ++  F  +
Sbjct: 294 TRRMSRLINDFLEMTKLESGQFPLNKTEFDINELIRLAVIKFEKRIVEKDLTVKVDFEED 353

Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753
              ++AD   ++Q+  N++ NAI F+   G I I T    + +  + ++D G+G++  + 
Sbjct: 354 RRIVIADKDKIEQVLTNLIDNAIKFSKEKGIIHIFTEIKDD-KAFITIKDNGIGISPEDQ 412

Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           E     F +   S+    +G GLGL + K +++A+  + ++ S   KGT      P+
Sbjct: 413 EHIWDRFYKADKSRGK--DGAGLGLYIVKRIINAHNEEIWVESELGKGTAFTFTLPM 467


>gi|258591201|emb|CBE67498.1| putative Histidine kinase [NC10 bacterium 'Dutch sediment']
          Length = 942

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 108/689 (15%), Positives = 216/689 (31%), Gaps = 68/689 (9%)

Query: 157 LYVPIDLAALPIYS--------RNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +  A    Y         R RE +         +           +  + K+  L 
Sbjct: 141 ERHRVQEALHAAYDEMEGRVRERTRELTSTAEALQAKIA-EHELAEQALRESEAKYWALV 199

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPP---HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
                   V   +  I            +    ++             L   K       
Sbjct: 200 TQINDGLFVVDVQGVITFGNQALAKIHGVDSPEQLVGRNLLEFVAPAELSAVKERFARDV 259

Query: 266 ESSLPEQ----EDFHTINLNQYTKKQYFGTLQNNSKESFEYL--SHRNHPSLSAYFDEGE 319
           E+    +    +   +     + + +    L+++    F  +     +         E  
Sbjct: 260 ETGTSVEVVETQIVRSDGETAFVEVKSVPILKDDRIVGFRGVLRDVTDRKRSELALRETY 319

Query: 320 NLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
           +L    VD       +    GN+   +P+   +  ++  + +         L        
Sbjct: 320 DLLKAVVDASAAGITILDREGNVRLWSPAAERMFGWRQEEVLARP------LPTVPFDGR 373

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
                +         I     +   Q    + + ++       ++        GI  +  
Sbjct: 374 EEYLALCERAMAGELIVGLEVVR--QKKDGSLIDVSLSTAPLRDEKGGITGVVGIMVDIT 431

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
           + +  + ++ ++   L +       GI I +R G I   N A ++L GYPVE+ + +   
Sbjct: 432 ERKRTEGQIRLQAAALEAAAN----GIVITDRNGTIRWVNPAFTRLTGYPVEEAVGQTPR 487

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----Y 554
           +             L E +     +  +  T+   K+  L +    I  +         +
Sbjct: 488 LLRSGRHDQAFYRNLWETVLSG--RVWQGETVNRRKDGSLYTEDQTIAPVLDEQGAVIHF 545

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E +  +++L  A+K+              ++H+    L  IIGF+E+   + 
Sbjct: 546 IAVKQDITEHRHLEDQLHQAQKL-----EAIGLLAGGIAHDFNNLLNGIIGFAELALREL 600

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                  +   Y + + R G     ++  LL  ++    K  L  +P+ L+  + E+  L
Sbjct: 601 SEG---SKGALYLSRVPRLGRQAAGLIGQLLTFAR----KAPLERKPLDLNPLLKESGKL 653

Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT---- 730
           +Q    E  I I+   A       ADL +V+QI LN+ +NA    P GG + +       
Sbjct: 654 LQRTFPE-TITIQVEPAFEPLIANADLGNVQQIILNLATNARDAMPHGGTLTLRLAPVIL 712

Query: 731 ----------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
                             L V DTG G+     ++  +PF          G GTGLGL  
Sbjct: 713 TEASLGDRLHRRPGAFACLTVADTGTGIPAAIRDRIFEPFFTTKGP----GHGTGLGLAS 768

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
              +V  + G   + +   +G+   +  P
Sbjct: 769 VYGIVHQHEGWLEVETAEGQGSAFYVFLP 797



 Score =  137 bits (346), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 42/351 (11%), Positives = 108/351 (30%), Gaps = 20/351 (5%)

Query: 233 HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL 292
                + V+++  +      +       L  +  +   E  + H +    +         
Sbjct: 100 VTATASVVTAVALWPLIPKALALPSPAQLEAANLALQEEVRERHRVQEALHAAYDEMEGR 159

Query: 293 QNNSKESFEYLS------HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYAN 345
                      +         H        E E      V +     FV    G + + N
Sbjct: 160 VRERTRELTSTAEALQAKIAEHELAEQALRESEAKYWALVTQINDGLFVVDVQGVITFGN 219

Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405
            +   +    S + +     L     AP        +      +  +          ++ 
Sbjct: 220 QALAKIHGVDSPEQLVGRNLLE--FVAPAELSAVKERFARDVETGTSVEVVET--QIVRS 275

Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465
           + E +           +     +   G+  +  D + ++  +      L ++++A++ GI
Sbjct: 276 DGETAFVEVKSVPILKD--DRIVGFRGVLRDVTDRKRSELALRETYDLLKAVVDASAAGI 333

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
            I++REG +   + A  ++FG+  E++L +P    +  +            ++ +L   +
Sbjct: 334 TILDREGNVRLWSPAAERMFGWRQEEVLARPL-PTVPFDGREEYLALCERAMAGEL--IV 390

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLS 572
               +   K+  L+ + +    L             M DI+E K+ + ++ 
Sbjct: 391 GLEVVRQKKDGSLIDVSLSTAPLRDEKGGITGVVGIMVDITERKRTEGQIR 441



 Score = 65.4 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 20/237 (8%), Positives = 70/237 (29%), Gaps = 4/237 (1%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D  G ++  S    +  G    +++   L  V      +        +  +     +  
Sbjct: 336 LDREGNVRLWSPAAERMFGWRQEEVLARPLPTVPFDGREEYLALCERAMAGELIVGLEVV 395

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +G+   + + L+  P+       +G  G  +    R   + +   +    + +   
Sbjct: 396 RQKKDGSL--IDVSLSTAPLRDEKGGITGVVGIMVDITERKRTEGQIRLQAAALEAAANG 453

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
            +    +   +     F++ +  P      +   L     H     +     +L+     
Sbjct: 454 IVITDRNGTIRWVNPAFTRLTGYPVEEAVGQTPRLLRSGRHDQAFYRNLWETVLSGRV-- 511

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
              +      + + YT+ Q    + +       +++ +   +   + ++  +   + 
Sbjct: 512 WQGETVNRRKDGSLYTEDQTIAPVLDEQGAVIHFIAVKQDITEHRHLEDQLHQAQKL 568


>gi|46201957|ref|ZP_00208322.1| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 413

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 108/417 (25%), Positives = 178/417 (42%), Gaps = 21/417 (5%)

Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
             I W+    L            + ++    G      +          E      IL  
Sbjct: 12  FEISWSGLWKLTTAATIPYYTGPYGKSQRGFGFVTIGANVDDFHAAASREKEHTDQIL-- 69

Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520
                A+ NR+      N  ++ +             +  +       +  ++   L+  
Sbjct: 70  -----ALRNRDLEAQY-NAVMALITSQVESLARELSISTVIMIALVVGIAVWMASFLTRR 123

Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN--KLSHAKKIA 578
           +   +  I   S +E +         +            +    +  ++  +L  A+K A
Sbjct: 124 ITAVVGGIHRFSEQETEYRL----PVQGHDEMASLAISFNQMADRIGESFVRLDEARKRA 179

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
           E+ S  KS+FLA +SHE+RTPL  IIGFSE+I+++      +    E A+ I++S   +L
Sbjct: 180 EEASRMKSEFLANMSHELRTPLNGIIGFSELIRDEA----ADDETRENADIIEKSSRHLL 235

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-I 697
           ++VN +LDI+KIE+G M L  + V L   V+EA S+    A  K I + +  ++N P  I
Sbjct: 236 ELVNSILDIAKIEAGAMTLAVQDVKLAPLVAEAASVHHSAAQAKGITLSSQVSDNCPETI 295

Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757
            AD   ++QI  N+LSNA+ FT  G ++ +S        +I RV DTG G+    L    
Sbjct: 296 RADPLRLRQIIHNLLSNAVKFTEKG-EVSLSVELEP-GHLIFRVSDTGAGIPEGMLHAIF 353

Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           + F Q+ +       GTGLGL LA+ +V+   G   + ST  KGT+     PL+   
Sbjct: 354 EKFRQVDSFLTRSHSGTGLGLTLARHLVELMGGTIGVQSTVGKGTVFHFTLPLHQPE 410


>gi|323136329|ref|ZP_08071411.1| PAS/PAC sensor signal transduction histidine kinase [Methylocystis
            sp. ATCC 49242]
 gi|322398403|gb|EFY00923.1| PAS/PAC sensor signal transduction histidine kinase [Methylocystis
            sp. ATCC 49242]
          Length = 1149

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 114/777 (14%), Positives = 246/777 (31%), Gaps = 81/777 (10%)

Query: 86   TWNIDAHGYLKEISEELPKTIGNYA------FKMIGMRLCDVSDILHIDPNNHIGDLLKR 139
            TWN D    +    +   + +G            +G    +  DI++    + +      
Sbjct: 398  TWNWDVQADIAWFDDVGMEYLGLPQGVPIHYSDYVGRVPEEERDIVN----SAVQAAFAG 453

Query: 140  QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199
                  +  L   + T +   +    +  +          G G V+            + 
Sbjct: 454  DGRVLLEHRLVNAQ-TGVACWVSCRGVFTFDDEGRPVH--GAGAVYDITERKLAEEALRE 510

Query: 200  LDKKFSH-----------------LHEIKKGHSSVEKEKYDIFSQQ-SPPPHLRMKNKVS 241
             + +                    L +    +  V +   ++            +     
Sbjct: 511  SEAEARRQHDELNWIYQNAPIGMCLLDRNLHYRRVNRWLAELNGAPMEAHIGRSVSEMAP 570

Query: 242  SLTEYYAHKDDVLKTEKYPLLT--SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
              ++  A     +     PL        + P  +    ++ + +      G +   S   
Sbjct: 571  DASDQIAQLVRQVVATGQPLKNYLIVRKNSPNSDAVRFLDASYFPLIDEHGEVSGFSVLL 630

Query: 300  FEYLSHRNHPSLSAYFDEGENLTPETVD----KCPIPFFVYSHG-NLFYANPSFLLLTKY 354
             E    +       + +       + +D      PI              N  +L     
Sbjct: 631  EEITDRKLAEEALRHSESEARKQRDELDWIYRNAPIGLAYLDLDLRYRRIND-WLANLSQ 689

Query: 355  KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
            + V++                     IK  +L  +    +        +  N      + 
Sbjct: 690  RPVEEHIGLSVFDV--VPQFARGAKMIKEWIL--ATGEPVRNLEFSGEMPPNSGVVRHIN 745

Query: 415  FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI-------EVMQLCSILEATSDGIAI 467
               +   ++       + +  E  + +  +  +         +  +L  I E T  G+A 
Sbjct: 746  SSWYPAFSEEGALAGFSVVVEEITERKRAEEALRRSEAKARKQRDELKWIYENTPVGLAS 805

Query: 468  INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
            ++++    S NR ++++ G P+E  + +     +   +  V       I + +  + +E 
Sbjct: 806  LDKDLRFHSINRRLAEMNGLPIEAHIGRTVHEVVPDLSSKVEQLAHKIIATGEPVRNIEL 865

Query: 528  IT-------LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
                     +    +E          ++   + +S+ + +++E K  +           +
Sbjct: 866  EGETAANPGVARYWDESWYPTFDSNGEI---AGFSVVVEEVTESKHLQ--------ALRE 914

Query: 581  ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN-QRFGPLGNPRYIEYANYIDRSGNLVLD 639
                K +FLA ++HE+R PL  I     +++      P    +     +  +R    ++ 
Sbjct: 915  ADRRKDEFLATLAHELRNPLAPIKNAIHLLQMLNHDDPTAEQKRRLALSRAERQVTHLVR 974

Query: 640  IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA 699
            +V+DLL++++I  GK+ L  EPV L   +S+AI L           +     ++   + A
Sbjct: 975  LVDDLLEVTRINHGKIELRKEPVELAAILSQAIDLSHSQIEAGPHQLIVELRSHSLPVEA 1034

Query: 700  DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKP 759
            D   + Q+  N+L+NA  FT +GG+I +        E I+RVRD GVG+           
Sbjct: 1035 DPVRLAQVFANLLNNAAKFTEAGGRIDV-IADREEGEAIVRVRDNGVGIPPEMASSIFDM 1093

Query: 760  FGQIPNS-----QQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFPL 810
            F QI          I        L LA+ +V  + G+    S     G+   +  PL
Sbjct: 1094 FTQIKTGVRSGRGGIGIG-----LALARGIVQLHGGRIEARSAGLGHGSEFIVRLPL 1145



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 51/507 (10%), Positives = 126/507 (24%), Gaps = 26/507 (5%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D       +S       G     ++G    DV   L           L  +     +   
Sbjct: 21  DREMRYLAVSPRWMTDFGLE-GSILGRSDYDVFPGLPERWKQLHQRALAGEIEHPSEDKF 79

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
              +GT  +   +    P    + E  G   F          +     +R  ++ S    
Sbjct: 80  TCPDGTIRWKRWER--RPWRHGDGEIGGIIIFA--EDITERKEAEEEARRTAERLSMAQS 135

Query: 210 IKKGHSSVEKEKYDIFSQQ------SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
             +          +  +           P          L+  +      +  +   +  
Sbjct: 136 AAQIGIFEWDFTSNRTTVDKQYCDIFGLPPGTPLTYAGYLSMVHPEDRACIDAQNLAVFA 195

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
           +      E       +              +        L      +     +     T 
Sbjct: 196 AGGHIENECRIIRANDGVVRWIVAKGEVTLDERDRPTRLLGAVWDITERKRNEAAARETA 255

Query: 324 ETVDKCP----IPFFVYSHGNLF-YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
           E +        I  + ++       A+   L L           A  ++ +    +    
Sbjct: 256 ERLSLVQSAARIGVWEWNMKTGESVASEVLLDLYGLPRDASFSHADFMAVVHPDDRHLVE 315

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
              +  M    +   +A + +   ++ N      MT     + ++    +   G+  +  
Sbjct: 316 ENARAAM----NGKDVAIADQYRIVRANDGAIRWMTASGGFQFDKDGRPIFAMGVVYDIT 371

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE-DILRKPF 497
           + +  +  +     +L     A   G    + +  I   +    +  G P    I    +
Sbjct: 372 ERKQVEIALRETSERLRLAQSAAHIGTWNWDVQADIAWFDDVGMEYLGLPQGVPIHYSDY 431

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY--- 554
              + +    ++N  +    + D R  LE   +   +      +                
Sbjct: 432 VGRVPEEERDIVNSAVQAAFAGDGRVLLEHRLVN-AQTGVACWVSCRGVFTFDDEGRPVH 490

Query: 555 -SLTMHDISEWKQEKNKLSHAKKIAEK 580
            +  ++DI+E K  +  L  ++  A +
Sbjct: 491 GAGAVYDITERKLAEEALRESEAEARR 517



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 42/393 (10%), Positives = 102/393 (25%), Gaps = 16/393 (4%)

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
           + F     I       E     +  +      L       S  + +    +  K      
Sbjct: 7   RLFIEFTPIAAAMFDREMRYLAVSPRWMTDFGLEGSILGRSDYDVFPGLPERWKQLHQRA 66

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
           L  E    P ++ F   +     K+      ++   E    +      +     +E    
Sbjct: 67  LAGEIEH-PSEDKFTCPDGTIRWKRWERRPWRHGDGEIGGIIIFAEDITERKEAEEEARR 125

Query: 322 TPETVD----KCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
           T E +        I  F +    N    +  +  +        +  AG LS     P+  
Sbjct: 126 TAERLSMAQSAAQIGIFEWDFTSNRTTVDKQYCDIFGLPPGTPLTYAGYLSM--VHPEDR 183

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
                + + ++ +             I+ N      +        ++        G   +
Sbjct: 184 ACIDAQNLAVFAAGG---HIENECRIIRANDGVVRWIVAKGEVTLDERDRPTRLLGAVWD 240

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE-DILRK 495
             + + N+        +L  +  A   G+   N +      +  +  L+G P +      
Sbjct: 241 ITERKRNEAAARETAERLSLVQSAARIGVWEWNMKTGESVASEVLLDLYGLPRDASFSHA 300

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY- 554
            F   +  +   ++       ++       ++  +    +  +  +              
Sbjct: 301 DFMAVVHPDDRHLVEENARAAMNGKDVAIADQYRIVRANDGAIRWMTASGGFQFDKDGRP 360

Query: 555 ---SLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
                 ++DI+E KQ +  L    +      S 
Sbjct: 361 IFAMGVVYDITERKQVEIALRETSERLRLAQSA 393



 Score = 41.2 bits (95), Expect = 0.82,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 37/136 (27%), Gaps = 4/136 (2%)

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
             +L   +E T    A+ +RE   L+ +      FG     IL +          P    
Sbjct: 3   SAELRLFIEFTPIAAAMFDREMRYLAVSPRWMTDFGLEGS-ILGRSDYDVFPG-LPERWK 60

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK--LPFSSCYSLTMHDISEWKQEK 568
                 L+ ++    E          +         +          +   DI+E K+ +
Sbjct: 61  QLHQRALAGEIEHPSEDKFTCPDGTIRWKRWERRPWRHGDGEIGGIIIFAEDITERKEAE 120

Query: 569 NKLSHAKKIAEKESSH 584
            +     +      S 
Sbjct: 121 EEARRTAERLSMAQSA 136


>gi|147672178|ref|YP_001215511.1| sensor histidine kinase LuxQ [Vibrio cholerae O395]
 gi|262168577|ref|ZP_06036273.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae RC27]
 gi|146314561|gb|ABQ19101.1| sensor histidine kinase LuxQ [Vibrio cholerae O395]
 gi|227015203|gb|ACP11412.1| sensor histidine kinase LuxQ [Vibrio cholerae O395]
 gi|262023106|gb|EEY41811.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae RC27]
          Length = 857

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 83/377 (22%), Positives = 162/377 (42%), Gaps = 21/377 (5%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           R++  +  Q   +         + N  G ++  N +    F              FL + 
Sbjct: 350 RRLANKEKQFEDLFNFALSPTMLWNTSGRLIRMNPSAQIQFLREDAQ------NHFLFEI 403

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT-MHDISE 563
               +   +T+    D    +         + ++    +    +       +T   DI+ 
Sbjct: 404 LERQLLPTITKAAQGDNPSDVTTEV-----DGRVYRWNLSPIMVEGQIISIITQGQDITT 458

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + + +   A++ AE+ +  +++FLA++SHE+RTPL  ++G S+++K        N   
Sbjct: 459 IAEAEKQSQAARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRTPL----NDEQ 514

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            E+   +  SG  +L ++ND+LD S++E GK  +      L E V     + +   NEK 
Sbjct: 515 REHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKNEFRLKELVCAIDRIYRPLCNEKG 574

Query: 684 ILIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EVIL 739
           + +  +        + +D   + QI  N+L+NAI FT  G  I +       +   ++++
Sbjct: 575 LELVVNSNITTAAIVRSDQIRINQILFNLLNNAIKFTHQGS-IRVELQLIEGDPLAQLVI 633

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
           +V DTG+G+   +L    +PF Q  ++      G+GLGL +  ++V+   G+ ++ S   
Sbjct: 634 QVVDTGIGIREQDLTVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHVSSEYG 693

Query: 800 KGTLIEIIFPLYDTSHP 816
            GT  EI  P+     P
Sbjct: 694 IGTRFEIQLPIELVEKP 710


>gi|319901154|ref|YP_004160882.1| multi-sensor signal transduction histidine kinase [Bacteroides
           helcogenes P 36-108]
 gi|319416185|gb|ADV43296.1| multi-sensor signal transduction histidine kinase [Bacteroides
           helcogenes P 36-108]
          Length = 807

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 95/519 (18%), Positives = 193/519 (37%), Gaps = 39/519 (7%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
                  D  E +        P+   +Y  +G L   N   + +      +D+       
Sbjct: 310 RRDRRIIDHSEQIFQHVFSNIPVGVEIYDRNGCLTNINQEDMDIYGIACKEDVLGL---- 365

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR-------ENSLAMTFIPFEK 420
            L D P  S+                +      H  + N           + +       
Sbjct: 366 RLQDNPNFSEKQLH-----RIETEDDVDFQLEYHFDRLNGYYPTTFKNRVVHLYLKLRRV 420

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA---IINREGIILST 477
            +     M    I  ++ +    + ++         I +    G A   ++  EG   + 
Sbjct: 421 YDGLGHFMGYLCITIDNTERVDIQGRINDFENFFLIISDYAKVGYAKFNLLTLEGY--AI 478

Query: 478 NRAVSKLFGYPVEDILRKP-FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
            +    +       +         L  +    + ++  ++     ++  E        + 
Sbjct: 479 KQWFKNMGEKDDMVLKGVIGIYSHLHPHDRWKLLNFYRQVHIGRRKRFSE-ELRVCRPDG 537

Query: 537 KLLSLRI--IIKKLPFSSCYS---LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
               +R   I+ +    S         +DI++ K+ + KL  AK+ AE     KS FLA 
Sbjct: 538 GWNWIRCNTILNRYEPESGVIELTSVNYDITQLKETECKLMEAKEKAETADRLKSAFLAN 597

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           +SHEIRTPL AI+GFS ++              EY + ++ + NL+L +++D+LD+SKIE
Sbjct: 598 MSHEIRTPLNAIVGFSGLVSETE----DPDERKEYISIVEANNNLLLQLISDILDLSKIE 653

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
           +G  +     +++++  ++ ++ +Q+      + +          I++D   + Q+  N 
Sbjct: 654 AGTFDFMVGDINVNQLCTDLVTSLQMKLKP-GVELVFDRNLPEYHIVSDRNRLYQVLSNF 712

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           ++N++ FT  G  I +         +   V DTG+G+   + +     F ++ +      
Sbjct: 713 VNNSVKFTFKGS-IKVGYEKVDGMRLRFYVSDTGLGIAPDKQKAVFDRFVKLNSF----V 767

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            GTGLGL + K+++    G   + S   KG+    I P+
Sbjct: 768 PGTGLGLSICKSIIQQLGGTIGVDSEEGKGSCFWFILPI 806


>gi|218778613|ref|YP_002429931.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218759997|gb|ACL02463.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 859

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 86/525 (16%), Positives = 190/525 (36%), Gaps = 37/525 (7%)

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
            +     E E       ++  +   V   G   Y N + + ++ Y+  + + +       
Sbjct: 225 EIQKLTKESEEEFRLLSEQAIMSIIVLQDGIYKYVNDAAIKMSGYEREEFLRMNYQDMAK 284

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
           L  P   +    + +     ++  +        +    E      +         P +  
Sbjct: 285 LIHPDFREFVIEQGLKKMAGEKNGVVHHYIYKLLTKQGEERWVEQYSKSVIWKGRPADFL 344

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
                 +    +  + +++       +++E   D +  I ++  I  +N A+ ++ GY +
Sbjct: 345 ---TLIDITPQKKAEEELKKREEHYRALVENAMD-VIFIAQDEYIKFSNSAIVQVSGYSM 400

Query: 490 EDILRKPFTVFLEQNTPSVMNH-YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
           ++I        +  +   ++   ++       L  T     +    + K   L  +  + 
Sbjct: 401 DEISSVSIVDLIHPDERDMVVDRHVRRSRGESLPSTYSHRFITKDGQVKWGQLSSVRVEW 460

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
              +     + DI+  K+ + ++  A K+              V+HE    L+ I+G  E
Sbjct: 461 EGRNATLNFLRDITHQKELEQQVQQAHKL-----EAIGTLSGGVAHEFNNLLSIILGNVE 515

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
           +  +       +   +E+   I  +     +IV  LL  S+  + +  L    V +  ++
Sbjct: 516 MAMDDV---PADNEAMEFLEEIKIASKRGEEIVRQLLSFSRPAAPERKL----VDIPSSI 568

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP--SGG--- 723
            E + L++       I      +    ++L D   V+Q+ +N+++NA H     SGG   
Sbjct: 569 RETMGLLRASIPSY-IAFHVDISPECHKVLGDPTQVRQVIINLVNNAAHAMEGASGGLAI 627

Query: 724 ----------QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
                     +I         + V L V+D+G G+   +L +   PF    +     G+G
Sbjct: 628 RARNVFSRTEEIFFDQVLLPGDYVSLEVKDSGHGIAKEDLGRIFDPFYTTKD----VGKG 683

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
           +G+GL + + ++ A+ G   I S P KG L+E  FP      P +
Sbjct: 684 SGMGLSVVQGIMKAHGGGVRISSAPGKGALVECYFPSAGKGAPSE 728



 Score = 46.2 bits (108), Expect = 0.027,   Method: Composition-based stats.
 Identities = 37/315 (11%), Positives = 80/315 (25%), Gaps = 32/315 (10%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCD---VSDI----LHIDPNNHIGDLLKRQNTWY 144
            G  K +++   K  G    + + M   D   +         I+         K     +
Sbjct: 253 DGIYKYVNDAAIKMSGYEREEFLRMNYQDMAKLIHPDFREFVIEQGLKKMAGEKNGVVHH 312

Query: 145 GKTTLWPIEGTNLYV-----PIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199
               L   +G   +V      +     P             F  +             K+
Sbjct: 313 YIYKLLTKQGEERWVEQYSKSVIWKGRPA-----------DFLTLIDITPQKKAEEELKK 361

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP--PPHLRMKNKVSSLTEYYAHKDDVLKTE 257
            ++ +  L E       + +++Y  FS  +        M    S       H D+     
Sbjct: 362 REEHYRALVENAMDVIFIAQDEYIKFSNSAIVQVSGYSMDEISSVSIVDLIHPDERDMVV 421

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
              +  S   SLP       I  +   K     +++   +     L+     +     ++
Sbjct: 422 DRHVRRSRGESLPSTYSHRFITKDGQVKWGQLSSVRVEWEGRNATLNFLRDITHQKELEQ 481

Query: 318 GENLTP--ETVDKCPIPFFVY--SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
                   E +            +  ++   N    +       + +E    L  +  A 
Sbjct: 482 QVQQAHKLEAIGTLSGGVAHEFNNLLSIILGNVEMAMDDVPADNEAME---FLEEIKIAS 538

Query: 374 KLSDNNAIKPVMLYR 388
           K  +    + +   R
Sbjct: 539 KRGEEIVRQLLSFSR 553


>gi|116696286|ref|YP_841862.1| signal transduction histidine kinase [Ralstonia eutropha H16]
 gi|113530785|emb|CAJ97132.1| signal transduction histidine kinase containing a receiver domain
           (hybrid) [Ralstonia eutropha H16]
          Length = 668

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 102/530 (19%), Positives = 190/530 (35%), Gaps = 37/530 (6%)

Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSV 357
             E        +      +   L     D      F     G +     +   +  Y + 
Sbjct: 15  VGEPDCTLADDAGLLLAAQYRRLLDAVED---CAVFETDAHGCIAMWPDAARRVFGYSAE 71

Query: 358 DDIEI-----------AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
           +               A GL            +A       R D + + AS  +  I   
Sbjct: 72  EITGRHFSCLHRPDDVAAGLPQQWLQAAALGGSARDQGWRVRRDGSLLQASCLMRAIGAA 131

Query: 407 RENSLAMTFIPFE-KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS-DG 464
               +A          +   +         +    +       +   ++  + E      
Sbjct: 132 DGPDVAARHGDASSVESAAGQAAGFIVSCRDITVQQAASEHARLADTRMRLLAENLPGTA 191

Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
           +  ++ +G I S N     L GY   + + +P    L     +        + +      
Sbjct: 192 VCELDLDGTIRSWNVGAQALAGYVEAEAVGQPLA-LLYSRQDAAAGRDRAALEAARACGQ 250

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEK 580
                  + K+  ++     +  +  ++        T+ D+S+  + +        + E 
Sbjct: 251 WAGEERVARKDGSVVRCHTRMVLVRDAAGCPTSLLWTVRDLSDALRLE--------MLEA 302

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            S     FLA ++HE+R PL A+    EVI+     P  + R    A  IDR  + +  +
Sbjct: 303 GSRRLQSFLAILAHELRNPLAAVRNAVEVIE---LTPDADTRVRRCAGIIDRQLHQLERL 359

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILAD 700
           VNDLLD+ ++ +GK+ +   P S ++ V+ +I  ++         +  +   + P + AD
Sbjct: 360 VNDLLDVGRVTAGKLKMELTPTSYNDVVTTSIEAIRPVLEAAGQRLVLALPASSPYVRAD 419

Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760
              + Q+ LN+LSNA+ +TP GG + +  +   +  VI  V DTG G+    L++    F
Sbjct: 420 AARLGQVLLNLLSNAVKYTPRGGIVSVHVSVE-SARVITAVSDTGRGLAPAALDRIFDLF 478

Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFP 809
            Q   +      G G+GL LAKA+V+A+ G     S    KG+   +I P
Sbjct: 479 AQEAGAGSR--GGLGIGLALAKAVVEAHGGAIQADSGGAGKGSTFTVILP 526



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 32/330 (9%), Positives = 76/330 (23%), Gaps = 29/330 (8%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR---QNT 142
            +  DAHG +    +   +  G  A ++ G     +               L+      +
Sbjct: 46  VFETDAHGCIAMWPDAARRVFGYSAEEITGRHFSCL-HRPDDVAAGLPQQWLQAAALGGS 104

Query: 143 WYGKTTLWPIEGTNLYVPIDLAA---------LPIYSRNREFSGFRG-----FGIVHVNR 188
              +      +G+ L     + A            +          G             
Sbjct: 105 ARDQGWRVRRDGSLLQASCLMRAIGAADGPDVAARHGDASSVESAAGQAAGFIVSCRDIT 164

Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFS----QQSPPPHLRMKNKVSSLT 244
           V        +  D +   L E   G +  E +                       V    
Sbjct: 165 VQQAASEHARLADTRMRLLAENLPGTAVCELDLDGTIRSWNVGAQALAGYVEAEAVGQPL 224

Query: 245 EYYAHKDDVLKTEKYPLLTSEES--SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302
                + D         L +  +      +E     + +          +++ +      
Sbjct: 225 ALLYSRQDAAAGRDRAALEAARACGQWAGEERVARKDGSVVRCHTRMVLVRDAAGCPTSL 284

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEI 362
           L      S +   +  E  +     +  +    +   N   A  + + + +     D  +
Sbjct: 285 LWTVRDLSDALRLEMLEAGSRRL--QSFLAILAHELRNPLAAVRNAVEVIELTPDADTRV 342

Query: 363 ---AGGLSTLLDAPKLSDNNAIKPVMLYRS 389
              AG +   L   +   N+ +    +   
Sbjct: 343 RRCAGIIDRQLHQLERLVNDLLDVGRVTAG 372



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/369 (8%), Positives = 83/369 (22%), Gaps = 17/369 (4%)

Query: 70  SENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP 129
           ++                 +D  G ++  +       G    + +G  L  +        
Sbjct: 176 ADTRMRLLAENLPGTAVCELDLDGTIRSWNVGAQALAGYVEAEAVGQPLALLYSRQDAAA 235

Query: 130 NNHIGDLLKRQ--NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187
                 L   +    W G+  +   +G+   V      + +       +       V   
Sbjct: 236 GRDRAALEAARACGQWAGEERVARKDGS--VVRCHTRMVLVRDAAGCPTSLLW--TVRDL 291

Query: 188 RVDND---PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244
                     A  +RL    + L    +   +  +   ++              + + + 
Sbjct: 292 SDALRLEMLEAGSRRLQSFLAILAHELRNPLAAVRNAVEVIELTPDADTR--VRRCAGII 349

Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
           +   H+ + L  +   +       L  +    + N    T  +    +   + +      
Sbjct: 350 DRQLHQLERLVNDLLDVGRVTAGKLKMELTPTSYNDVVTTSIEAIRPVLEAAGQRLVLAL 409

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYA---NPSFLLLTKYKSVDDIE 361
             + P + A   +   L    ++           G +        S  ++T         
Sbjct: 410 PASSPYVRA---DAARLGQVLLNLLSNAVKYTPRGGIVSVHVSVESARVITAVSDTGRGL 466

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
               L  + D          +  +            A    IQ +   +   +       
Sbjct: 467 APAALDRIFDLFAQEAGAGSRGGLGIGLALAKAVVEAHGGAIQADSGGAGKGSTFTVILP 526

Query: 422 NQFPENMPQ 430
                    
Sbjct: 527 RASARRREA 535


>gi|330829621|ref|YP_004392573.1| hypothetical protein B565_1921 [Aeromonas veronii B565]
 gi|328804757|gb|AEB49956.1| PAS, putative [Aeromonas veronii B565]
          Length = 1322

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 111/575 (19%), Positives = 200/575 (34%), Gaps = 49/575 (8%)

Query: 252  DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
            D L      LL  ++  +     F +I +         G +  + ++    ++ R+    
Sbjct: 481  DELNQRWRRLLVVQQPGVSYAAWFGSIAMALLISGIVIGGIWRSRQQLAREVAQRHAAEK 540

Query: 312  SAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
            +   +             P+P ++  S G +  +N     L           A   S  L
Sbjct: 541  ALAIESELR--ETMFQALPVPVYLRNSQGKVIKSNKQGRRL-----------ALRYSQQL 587

Query: 371  DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
              P +    +   ++L                     +   A    P     Q P     
Sbjct: 588  MLPPVQPQKSEGELVL--------------------GDQVFAYAQHPLRLDKQAPATD-- 625

Query: 431  NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII----NREGIILSTNRAVSKLFG 486
                 +    R   R +     +L ++       +        R G I   +R   +L G
Sbjct: 626  LIALSDISVLREQARFLRQAERRLRALTNTVPGVVLQFMFERGRVGGIEFISRGCYELLG 685

Query: 487  YPVEDILRKP--FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
               + I R+P      LE+     ++  +  +L               TK  + L L   
Sbjct: 686  LASQQIRREPKRVLTMLEREDRRRVSREMFAMLQAGKPFAFTMRYHHPTKGLRWLQLYGR 745

Query: 545  IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
             +  P        M D +   ++   L H+ + A++    K  FLA +SHEIRTP+ A++
Sbjct: 746  GRSQPQGWRIYAVMQDATARVEQDQALQHSHEQAQQAVLAKGRFLAAISHEIRTPMNAML 805

Query: 605  GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
            G  E + +                 + ++G+ +L ++ND+LD S+ E+ K++L  +P   
Sbjct: 806  GLLEWLASTPLSR----EQDSALARVRQAGDELLGLLNDVLDFSRNENSKLSLSPQPTDF 861

Query: 665  DEAVSEAISLVQLYANEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGG 723
             E     +++    A  K + +R      +P +   D   V+Q+  N+LSNAI F+  G 
Sbjct: 862  AELCEHVVAVHWTKARAKGLQLRLKLDPALPALQTLDPHRVRQVLHNLLSNAIKFSLRGE 921

Query: 724  QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
             ++          +   V D G G+T         PF Q     Q+R  GTGLGL + K 
Sbjct: 922  VVL--WAEVVASTLRFGVDDQGPGITAKMRTTLFMPFEQFAVEGQLRAPGTGLGLAICKQ 979

Query: 784  MVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
            +++   G   +      G+      PL       D
Sbjct: 980  LIEQMGGLIDVEGRAGGGSRFYCELPLKRVQQEPD 1014


>gi|77459260|ref|YP_348767.1| periplasmic sensor hybrid histidine kinase [Pseudomonas fluorescens
           Pf0-1]
 gi|77383263|gb|ABA74776.1| sensor protein RcsC putative two-component system, sensor kinase
           [Pseudomonas fluorescens Pf0-1]
          Length = 936

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 100/519 (19%), Positives = 180/519 (34%), Gaps = 35/519 (6%)

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
               D G         +       +S G     N   + L              L    D
Sbjct: 195 ERDLDSGWLGLEMDDREVSNALSDHSAGEFTMFNSQGMPLFSNSHKPPPGQNLPLLRQQD 254

Query: 372 APKLSDNNAIKPVMLYRSD----RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
                 +  +   ++ R         +  S  L  + W     L         +      
Sbjct: 255 FFGFVGDGWLPEQLVLRKQLKSSDRQLTYSIDLLAVLWALWPQLLGALAFCLASISLVWL 314

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLFG 486
           + +         T    + +    +    +++     + ++ R +  ++  N       G
Sbjct: 315 LIRRLEHRFITPTLQRIQALVESELFSRDVIQTAPVALCVLRRSDARVVLENTLARHWLG 374

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
              + +            +   +  Y                    T + + L L     
Sbjct: 375 ECGQQLGPGWIRAAFADKS-PCLTDYFE------------------TADGRHLYLSCAPT 415

Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
           +            DIS  +Q +  L  A++ A+  +  K+ FLA +SHEIRTPL  ++G 
Sbjct: 416 RYKGEDVLLCAFSDISARRQIEAALERARQSADAANEAKTLFLATMSHEIRTPLYGVLGT 475

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
            E++   +       +   Y   I+ S   +L ++ D+LD+SKIE+G++ L     S+  
Sbjct: 476 LELLARTQLDT----QQKSYLRAIEGSSATLLQLICDVLDVSKIEAGQLALELSDFSIVA 531

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI 725
              E +      A  K + +   F   +P  ++ D+  V+QI  N+LSNA+ FT SG  +
Sbjct: 532 LAQEVVQGYAAAAQSKGLQLYACFDPQLPDSLIGDISRVRQILNNLLSNAVKFTDSGRVV 591

Query: 726 -IISTTHTSNEEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
             ++      E V +  +V DTG G+ + +     +PF Q          GTGLGLP+  
Sbjct: 592 LRVNVLSREGERVCVQWQVSDTGRGIAHDDQAFIFEPFYQT-RGNSHVIAGTGLGLPICL 650

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS--HPHDC 819
            + +   G   + S P  G+   +  PL   S   P D 
Sbjct: 651 RLTNLMNGTLRMVSEPGLGSSFSLTLPLEQRSGNTPPDI 689


>gi|332968993|gb|EGK08035.1| phosphate regulon sensor histidine kinase protein PhoR
           [Psychrobacter sp. 1501(2011)]
          Length = 508

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 74/358 (20%), Positives = 156/358 (43%), Gaps = 34/358 (9%)

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE-QNTPSVMNH 511
           ++ S L A  D + +++++  +   N++   L      +   +     ++     +   +
Sbjct: 164 KIRSSLLALQDAVILLDKDDTLEWWNQSAETLLAL-RSEDQGRSILDLIDVPEFQNYYIN 222

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571
            ++    L LR   +          + L   +      F +   L ++D++  +  +   
Sbjct: 223 AISPNEGLRLRSWRDYE--------RFLQCEVT----HFGTEKLLIIYDVTRLQHLE--- 267

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
                        + DF+  VSHE+RTPLT I+G+ E   +Q   P  +P++    N + 
Sbjct: 268 -----------QMRKDFVGNVSHELRTPLTVIMGYIETFSDQ---PDLDPKWRRGFNLMT 313

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
           +    +  I+NDLL +S++E+ + ++  E V + + ++      Q Y  +   LI     
Sbjct: 314 QQTERMNRIINDLLLLSRLENEE-SIRTERVDMPKLMTSIFDDAQAYNKDFGHLIDLHID 372

Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751
           + +  +      +    LN+++NAI +TP GG+I I+            V+D G+G+ + 
Sbjct: 373 SQL-DVYGSEVYLNSALLNLVTNAIKYTPKGGEIRINWQ-EVKGGCSFSVQDNGIGIASE 430

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            +++  + F ++ + +     GTGLGL + K ++  +  K  I S   KG+   + FP
Sbjct: 431 HIDRLTERFYRVDSGRSRSTGGTGLGLAIVKHVLYQHGAKLTIQSEENKGSTFTVFFP 488


>gi|238786887|ref|ZP_04630688.1| Signal transduction histidine kinase [Yersinia frederiksenii ATCC
           33641]
 gi|238725255|gb|EEQ16894.1| Signal transduction histidine kinase [Yersinia frederiksenii ATCC
           33641]
          Length = 1054

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 85/378 (22%), Positives = 165/378 (43%), Gaps = 25/378 (6%)

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRK 495
               +  +R++        +++E     + +I+R E  ++  N       G   E    +
Sbjct: 341 VAPAQEAQREILASEAFNRTLIETAPVALCLIDRSEATLIFANALALDWLGVDEEARPHQ 400

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555
                   +    +   L  +      +        +  + +++ +     +    +   
Sbjct: 401 N-------DAIKTLFSQLQNVEQGGAIE------RLTLPDARIVYVVYAPTRYRQQAVIL 447

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
               D+S   + +  L+ AK+ A++ +  KS FLA +SHEIRTPL   +G  E++   + 
Sbjct: 448 CAFTDVSAHAEMEKHLTWAKQAADEANDAKSTFLATMSHEIRTPLYGALGTLELLSLTQL 507

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
               N +  +Y + I+ +  ++L I++D+LDISKIE+G++ L     +  E V E     
Sbjct: 508 ----NNQQRQYVDRIESASQMLLQIISDILDISKIEAGQLQLDKSEFNPRELVQECTGTY 563

Query: 676 QLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
              A+ K +L+ +  A +IP  ++ D   ++QI  N++SNAI FT  G  +++  +    
Sbjct: 564 AGMAHRKGLLLFSIIATDIPERVIGDPARIRQILNNLISNAIKFTEIG-TVVVRLSQLER 622

Query: 735 EEV----ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
             +    +L V D+GVG+   E EK   PF  I   + +   G GLG+ +   + +    
Sbjct: 623 SSLSAKFLLEVCDSGVGIDKAEQEKLFTPFYMIDAERNMA-GGAGLGMSICARLAELMDT 681

Query: 791 KFYIFSTPAKGTLIEIIF 808
           K  + S P  G+   +  
Sbjct: 682 KIQLRSEPQIGSQFSVEL 699


>gi|119472221|ref|ZP_01614400.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Alteromonadales bacterium TW-7]
 gi|119445039|gb|EAW26334.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Alteromonadales bacterium TW-7]
          Length = 772

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 73/400 (18%), Positives = 167/400 (41%), Gaps = 25/400 (6%)

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
                +  E  + +  ++++  + M   SI++++ D     +  G+    N+   ++ G 
Sbjct: 126 RAIEELRREIAERKKTQQELAQQSMLQRSIVDSSPDLFYYRDNNGVFAGCNKMFEEVMGK 185

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
              +++ K        +  S +     E+       T++   +G   +       +    
Sbjct: 186 SSSELIGKTVEQIFPNDFLSEVLRTDKEVEQTHKALTID---VGYEVDGATRWFELRKLP 242

Query: 548 LPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
                           DI+  K+    L             K  F+A +SHE+RTPL  I
Sbjct: 243 FINDEGDYIGLLGFGRDITSRKEAAEALET-------AYKDKGKFIATLSHELRTPLNGI 295

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +G + ++ +       N +   + N +  S   + +I ND++D+ KI+  ++++    ++
Sbjct: 296 VGLTRMLLDTDL----NKQQRSWCNTVFSSAETLGNIFNDIIDLDKIDREQLDIAANSIN 351

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA--DLRSVKQIALNILSNAIHFTPS 721
           + + +++ ++   L   +K +       N +  I A  D   ++Q+  N+++NA+ FT  
Sbjct: 352 VSDFINDVVNFAGLITEQKGLEFDIER-NGMLDIYALLDPTRLRQVVWNLINNAVKFTQH 410

Query: 722 GGQIIISTTHT---SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
           G ++ +  +         +++++ DTG G+   +L +    + + P+ Q     G+G+GL
Sbjct: 411 G-KVTLECSRENRPEGPWLVIKISDTGQGIPQEQLSRIFDMYYKAPDLQGTNAIGSGIGL 469

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
            + KA+V A  G   + ST  +G+   +  PL     P +
Sbjct: 470 AVTKALVTAMKGSITVNSTEGEGSCFTVQIPLSLCIAPTE 509



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/122 (11%), Positives = 39/122 (31%), Gaps = 5/122 (4%)

Query: 79  IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK 138
                 F +  D +G     ++   + +G  + ++IG  +  +     +         ++
Sbjct: 157 DSSPDLFYYR-DNNGVFAGCNKMFEEVMGKSSSELIGKTVEQIFPNDFLSEVLRTDKEVE 215

Query: 139 RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
           + +        + ++G       +L  LP  +   ++ G  GFG         +     +
Sbjct: 216 QTHKALTIDVGYEVDGATR--WFELRKLPFINDEGDYIGLLGFG--RDITSRKEAAEALE 271

Query: 199 RL 200
             
Sbjct: 272 TA 273



 Score = 39.2 bits (90), Expect = 3.3,   Method: Composition-based stats.
 Identities = 19/173 (10%), Positives = 41/173 (23%), Gaps = 15/173 (8%)

Query: 277 TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY 336
            I+  +         ++   +E  E               +   L    VD  P  F+  
Sbjct: 113 EIDERKMAFHAKHRAIEELRREIAE------RKKTQQELAQQSMLQRSIVDSSPDLFYYR 166

Query: 337 SH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIA 395
            + G     N  F  +    S + I     +  +     LS       V+    +     
Sbjct: 167 DNNGVFAGCNKMFEEVMGKSSSELIGKT--VEQIFPNDFLS------EVLRTDKEVEQTH 218

Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
            +  +         +           N   + +   G   +    +     +E
Sbjct: 219 KALTIDVGYEVDGATRWFELRKLPFINDEGDYIGLLGFGRDITSRKEAAEALE 271


>gi|134292639|ref|YP_001116375.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           vietnamiensis G4]
 gi|134135796|gb|ABO56910.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           vietnamiensis G4]
          Length = 1129

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 120/681 (17%), Positives = 214/681 (31%), Gaps = 38/681 (5%)

Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212
            G    +  +  A P      +FS   G              AL +    + +  +    
Sbjct: 89  GGRIEQLW-NQGARPSADALAQFSAAGGVLGASNGDGSETLLALARLTPDRPAPSYARYL 147

Query: 213 GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ 272
           G       + D      PP  +     +             L      L+    +  P  
Sbjct: 148 GALFGLVRQDDRSGHVLPPALVSGGEPLGGYLIGLDAPF--LAVLGTELVPRAHTLEPGT 205

Query: 273 EDFHTINLNQYTKKQYFGTLQNNS----KESFEYLSHRNHPSLSAYFDEGENL-----TP 323
           +    I+    T      TL  +         + LS R     +   D+           
Sbjct: 206 DLHTLIDGLMPTGIARQKTLMQSRPFVFDRRLDPLSGRVVMRFARRLDDAAGRPFGWLVI 265

Query: 324 ETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTL--LDAPKLSDNNA 380
             + +        S    +   +    ++   +    +           L          
Sbjct: 266 NGLHRVDDVMAPRSDDEDVAIVDARHDIVFGRERDRSMIERALHDARAPLGDHVAVRRVG 325

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
            + V+  R   T +            RE  + +                   +       
Sbjct: 326 ARFVVYDRLPGTGLVMMTSFSWRSMVREMRVGLGITFGAALLGIVLLWSAIVLFDRRALR 385

Query: 441 RINKRKME--IEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRKPF 497
             ++R +          ++      G+ +++  +G  +  N AV    G      L K  
Sbjct: 386 PAHRRAIRLIESEAFNRTLARHAPAGLLLLSAADGETMVHNDAVRAYDGGAGGQRLGKRI 445

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL--PFSSCYS 555
                +                     ++        +   + L + + +          
Sbjct: 446 WDAYRE----------RAAAGDGRLDVMQHELAVEQADHGKVYLALQVVRTMFHGVDVLL 495

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
            T+ D++  K  ++KL  A+  AE  +  KS FLA +SHEIRTPL AI+G  E++   + 
Sbjct: 496 CTLTDVTARKLTEDKLKEARTAAEDANKAKSTFLATMSHEIRTPLNAIVGNLELMARAQL 555

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
                         +  S + +L  +ND+LD+SK ES +M L   P  L   + E  ++ 
Sbjct: 556 PLAE----RRRLQTVMSSSDALLHTINDVLDLSKAESNQMALEAVPFDLRAVLHEVAAIF 611

Query: 676 QLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIST--THT 732
           +  A+ K + +    A  +    + D   V+QI  N++SNAI FT  G ++ +       
Sbjct: 612 RALADAKHLRLECVIAAGLGDGYVGDPARVRQIVSNLVSNAIKFTEHG-RVTVEALPAAV 670

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
               V + VRDTG+G+    +      + Q   S   R  GTGLGLPL + +     G  
Sbjct: 671 PGRGVEIVVRDTGIGIEPDSMPTLFDVYVQTDASIYRRFGGTGLGLPLCRRLARLMGGDV 730

Query: 793 YIFSTPAKGTLIEIIFPLYDT 813
            + S P  G +     PL D 
Sbjct: 731 TVESRPGAGAVFTASLPLADA 751


>gi|262190201|ref|ZP_06048478.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae CT
           5369-93]
 gi|262033921|gb|EEY52384.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae CT
           5369-93]
          Length = 857

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 82/377 (21%), Positives = 162/377 (42%), Gaps = 21/377 (5%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           R++  +  Q   +         + N  G ++  N +    F              FL + 
Sbjct: 350 RRLANKEKQFEDLFNFALSPTMLWNTSGRLIRMNPSAQIQFLREDAQ------NHFLFEI 403

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT-MHDISE 563
               +   +T+    +    +         + ++    +    +       +T   DI+ 
Sbjct: 404 LERQLLPTITKAAQGNNPSDVTTEV-----DGRVYRWNLSPIMVEGQIISIITQGQDITT 458

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + + +   A++ AE+ +  +++FLA++SHE+RTPL  ++G S+++K        N   
Sbjct: 459 IAEAEKQSQAARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRTPL----NDEQ 514

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            E+   +  SG  +L ++ND+LD S++E GK  +      L E V     + +   NEK 
Sbjct: 515 REHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKNEFRLKELVCAIDRIYRPLCNEKG 574

Query: 684 ILIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EVIL 739
           + +  +        + +D   + QI  N+L+NAI FT  G  I +       +   ++++
Sbjct: 575 LELVVNSNITTAAIVRSDQIRINQILFNLLNNAIKFTHQGS-IRVELQLIEGDPLAQLVI 633

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
           +V DTG+G+   +L    +PF Q  ++      G+GLGL +  ++V+   G+ ++ S   
Sbjct: 634 QVVDTGIGIREQDLTVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHVSSEYG 693

Query: 800 KGTLIEIIFPLYDTSHP 816
            GT  EI  P+     P
Sbjct: 694 IGTRFEIQLPIELVEKP 710


>gi|119471909|ref|ZP_01614217.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Alteromonadales bacterium TW-7]
 gi|119445282|gb|EAW26572.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Alteromonadales bacterium TW-7]
          Length = 928

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 85/248 (34%), Positives = 134/248 (54%), Gaps = 12/248 (4%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L+ AKK A+  +  KSDFLA++SHE+RTPL  ++GF+  +         N    +Y + 
Sbjct: 275 QLTMAKKEAQDANRVKSDFLAKMSHELRTPLNGVMGFTRQLYKTPL----NKHQKDYLDT 330

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I  S N ++ I++D+LD SK+E+G M L      L +AV+E ++L+   A+EK++ +   
Sbjct: 331 IMLSANSLMTIISDILDFSKLEAGAMELESIQFQLRDAVNEVMTLLAPSAHEKQLELSIY 390

Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTH--TSNEEVILRVRDTG 745
               +P  +  D    KQ+ +N+LSNAI FT  G  ++ IS       +  V++ V DTG
Sbjct: 391 INPQVPDDLTGDPTRFKQVLINLLSNAIKFTEQGSIKVDISYRLLDEESASVLVSVTDTG 450

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           VG+   + +    PFGQ  +S   +  GTGLGL + K +V+A  G+  + S P  GT   
Sbjct: 451 VGIPMDKQDSLFTPFGQADSSITRKFGGTGLGLIITKHIVEAMNGRISLNSAPGNGTCFT 510

Query: 806 ----IIFP 809
                  P
Sbjct: 511 FNSVFRLP 518


>gi|108757360|ref|YP_635475.1| sensory box histidine kinase [Myxococcus xanthus DK 1622]
 gi|108461240|gb|ABF86425.1| sensory box histidine kinase [Myxococcus xanthus DK 1622]
          Length = 543

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 84/541 (15%), Positives = 176/541 (32%), Gaps = 24/541 (4%)

Query: 279 NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH 338
                   +Y           +E        +L +    G       +   P      + 
Sbjct: 3   GAETAGDARYQELFNGADVSLWEEDFTAVSAALDSLRASGVQDLRAWLAAHPGFVMEAAE 62

Query: 339 G-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397
              +   N + + L + ++ D++     LS                ++L     T +   
Sbjct: 63  RVKVVDVNEATVRLLEARTRDEVLRTLSLSRSRVFVPEPLKAFTAELLLLWEGGTRLELE 122

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
             L T+         +  +          +        E    + ++   +    +  ++
Sbjct: 123 TELQTL-----GGRHIEVMLTLTRPSRERSDRVFVTLREVTAQKASQLARQESEARFRNM 177

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
            +     + + +  G  +  +R   +  G    + L   +   +  +           + 
Sbjct: 178 ADHAPVMLWVTDVTGRCIYLSRTWYEFTGQTEAEGLGFGWLKAVHPDDSEHSGAVF--LG 235

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSH 573
           +   R           K+ +              +     Y  ++ DISE KQ + +   
Sbjct: 236 ANARRSPFRLDYRLRRKDGEYRWAIDSASPRFGLNGEFLGYIGSVIDISERKQAEQERER 295

Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN---QRFGPLGNPRYIEYANYI 630
                ++    + +FL   SHE++TPLT +    + +     +R GP    R       +
Sbjct: 296 LLAAMDEAIRLRDEFLTVASHELKTPLTPLSLKLQTLARATQERRGPELLERLPADLEVM 355

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
            R    +  +V +LLD++ I SG ++L  EPV L   V E  +  +  +      I+   
Sbjct: 356 QRQVKRLSTLVGELLDVTLISSGHLHLELEPVDLGALVQEVAARFEGESQRTGTPIQAKL 415

Query: 691 ANNIPRILA--DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748
                 ++   D   ++Q   N+LSNA+ +   G  + +    T+       VRD G+G+
Sbjct: 416 DE---VVVGQWDRGRLEQAVSNLLSNALKYG-VGHPVHLQVGRTAE-HAWFSVRDEGIGI 470

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
               + +  + F +  +  +    G GLGL + +  V A  G   + ST  +G       
Sbjct: 471 PPEAVGRIFEKFERAVS--ERHYGGLGLGLYVTRQNVQAMGGTIDVRSTLGQGATFTARL 528

Query: 809 P 809
           P
Sbjct: 529 P 529



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 39/254 (15%), Positives = 72/254 (28%), Gaps = 10/254 (3%)

Query: 69  DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID 128
           +SE  F        V   W  D  G    +S    +  G    + +G            +
Sbjct: 169 ESEARFRNMADHAPV-MLWVTDVTGRCIYLSRTWYEFTGQTEAEGLGFGWLKAVHPDDSE 227

Query: 129 PNNHI-GDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187
            +  +      R++ +     L   +G   Y     +A P +  N EF G+ G  I    
Sbjct: 228 HSGAVFLGANARRSPFRLDYRLRRKDGE--YRWAIDSASPRFGLNGEFLGYIGSVI--DI 283

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDI----FSQQSPPPHLRMKNKVSSL 243
                     +RL         ++    +V   +        S +        + +    
Sbjct: 284 SERKQAEQERERLLAAMDEAIRLRDEFLTVASHELKTPLTPLSLKLQTLARATQERRGPE 343

Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303
                  D  +   +   L++    L +     + +L+   +    G L       FE  
Sbjct: 344 LLERLPADLEVMQRQVKRLSTLVGELLDVTLISSGHLHLELEPVDLGALVQEVAARFEGE 403

Query: 304 SHRNHPSLSAYFDE 317
           S R    + A  DE
Sbjct: 404 SQRTGTPIQAKLDE 417


>gi|87308947|ref|ZP_01091085.1| Response regulator receiver:ATP-binding
           region,ATPase-like:Histidine kinase A, N-terminal:Hpt
           [Blastopirellula marina DSM 3645]
 gi|87288290|gb|EAQ80186.1| Response regulator receiver:ATP-binding
           region,ATPase-like:Histidine kinase A, N-terminal:Hpt
           [Blastopirellula marina DSM 3645]
          Length = 837

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 80/347 (23%), Positives = 151/347 (43%), Gaps = 21/347 (6%)

Query: 467 IINREGIILSTNRAVSK-LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
           +I+RE  +   +R  S+ L+      +L +   +   + +     H  + +     R   
Sbjct: 65  LISREKFLEYMSRLFSRDLYSQRPVRVLYESMNIPHLEVSADASIHDASRMALSRPRDAA 124

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
            +      ++     + + +  +   S       D+         +   K+ A+  +  K
Sbjct: 125 YEPLAIRRQDGTFRVVSVHML-IQAQSHLLAIAKDV---------IQSQKESADAANRAK 174

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
             FLA +SHEIRTP+  IIG +E++      P    +  EY   I  S + ++ ++ND+L
Sbjct: 175 GQFLANMSHEIRTPMNGIIGMTELLLETELAP----QQHEYLQMIKTSADCLVSVINDIL 230

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSV 704
           D SKIE+GK+ +   P  L E + + +  +   A+ K + +      ++P  +  D   +
Sbjct: 231 DFSKIEAGKLEIESIPFQLRENLGDLMKTLAFRAHGKGLELVAHVRPDVPWRMTGDPGRL 290

Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTS----NEEVILRVRDTGVGMTNYELEKAMKPF 760
           +QI +N++ NAI FT  G +I++          +  +   V DTG+G+    L+K    F
Sbjct: 291 RQILVNLVGNAIKFTEHG-EIVVRVDIDEISETDALLHFTVCDTGIGIPEAALQKIFAAF 349

Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
            Q   +   +  GTGLGL +   +V+   GK ++ S    G+     
Sbjct: 350 EQADGTTTRKFGGTGLGLSICSRLVELMHGKIWVESQVHVGSQFHFT 396


>gi|310768138|gb|ADP13088.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Erwinia sp. Ejp617]
          Length = 992

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 94/378 (24%), Positives = 171/378 (45%), Gaps = 29/378 (7%)

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKP 496
           +    N  ++E +      I+ +   GI I+   +G  + +N                  
Sbjct: 385 LPAEENAYRLEEQEQFNRKIVASAPVGICILRTSDGTNILSNELA-------------HN 431

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556
           +   L Q         LTE++       ++      T     L +  +  +    +    
Sbjct: 432 YLTLLTQEDRL----RLTEMICGQQVNFVD----VLTGSNTNLQISFVHSRYRNENVAIC 483

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            + D+S   + +  L    + AE+ S  KS FLA VSHE+RTPL  IIG  +++K +   
Sbjct: 484 VLVDVSARVKMEQSLHEIAQEAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLKTKALP 543

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
              +         ++ S +L+L I++D+LD SKIES ++ +     S  E ++   +   
Sbjct: 544 AGADS----LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVIAHITANYL 599

Query: 677 LYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
               +KR+ +     +++P  L  D   ++Q+  N+L+NAI FT +GG  II   +   +
Sbjct: 600 AMVVKKRLTLWCFIDSDVPVALDGDPMRLQQVISNLLNNAIKFTHTGG--IILQAYVKGD 657

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            +  RVRD+GVG+   E+ +   PF Q+ +  Q+  +GTGLGL + + +++   G   + 
Sbjct: 658 YLAFRVRDSGVGIPAKEITRLFDPFFQVGSGVQLHFQGTGLGLAICEKLMNMMDGDIEVE 717

Query: 796 STPAKGTLIEIIFPLYDT 813
           S P  G+   +  PLY++
Sbjct: 718 SEPGMGSQFIVRIPLYNS 735


>gi|153800706|ref|ZP_01955292.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae
           MZO-3]
 gi|124123681|gb|EAY42424.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae
           MZO-3]
          Length = 857

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 83/377 (22%), Positives = 162/377 (42%), Gaps = 21/377 (5%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           R++  +  Q   +         + N  G ++  N +    F              FL + 
Sbjct: 350 RRLANKEKQFEDLFNFALSPTMLWNTSGRLIRMNPSAQIQFLREDAQ------NHFLFEI 403

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT-MHDISE 563
               +   +T+    D    +         + ++    +    +       +T   DI+ 
Sbjct: 404 LERQLLPTITKAAQGDNPSDVTTEV-----DGRVYRWNLSPIMVEGQIISIITQGQDITT 458

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + + +   A++ AE+ +  +++FLA++SHE+RTPL  ++G S+++K        N   
Sbjct: 459 IAEAEKQSQAARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRTPL----NDEQ 514

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            E+   +  SG  +L ++ND+LD S++E GK  +      L E V     + +   NEK 
Sbjct: 515 REHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKNEFRLKELVCAIDRIYRPLCNEKG 574

Query: 684 ILIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EVIL 739
           + +  +        + +D   + QI  N+L+NAI FT  G  I +       +   ++++
Sbjct: 575 LELVVNSNITTAAIVRSDQIRINQILFNLLNNAIKFTHQGS-IRVELQLIEGDPLAQLVI 633

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
           +V DTG+G+   +L    +PF Q  ++      G+GLGL +  ++V+   G+ ++ S   
Sbjct: 634 QVVDTGIGIREQDLTVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHVSSEYG 693

Query: 800 KGTLIEIIFPLYDTSHP 816
            GT  EI  P+     P
Sbjct: 694 IGTRFEIQLPIELVERP 710


>gi|115522160|ref|YP_779071.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisA53]
 gi|115516107|gb|ABJ04091.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisA53]
          Length = 1060

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 97/743 (13%), Positives = 217/743 (29%), Gaps = 77/743 (10%)

Query: 115 GMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNRE 174
           G     +    ++ P                +  +    G  L  P           ++E
Sbjct: 201 GKAFAVLVINFNLGPALERVRASLTGG---REAFVINEAGDYLVHP--------ADPSKE 249

Query: 175 FSGFRGFGIVHVNRVDNDPR--ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP 232
           F    GF +   +R+ +D        + D+    +   + G       ++   +      
Sbjct: 250 F----GFDLGERHRIQDDFPDFEPMLKADRSEPRVMTRRDGARYGLGWEWVRLAGGPRVA 305

Query: 233 HLRMKNKVSSLTEYYAHKDDVLKTEKYPLL--------TSEESSLPEQEDFHTINLNQYT 284
            + +++     +   A  +  L      +L         +   S P  +    +      
Sbjct: 306 VVEVRSYGVLTSVGSAVSNSTLIGGGAAMLCAILMAIAMARSLSRPLVQITRAVEGFGRG 365

Query: 285 K-----KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE-----TVDKCPIPFF 334
           +           +   ++      +     S +   +             T+     P  
Sbjct: 366 ELIRVKPGGGTEIAALAQTFLNMTAEAQRKSAALSDEIAARTHVAEMLNNTLTNMADPVV 425

Query: 335 VYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393
           +    G++   N +   L           A           ++     +   L R+ R  
Sbjct: 426 IADAGGSVVLTNVAAAKLFGQPIDIGNPQAYRSFERFCPDGVTP-LPFEQSPLLRAFRGE 484

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
           +  +          +    +        N+  +      +  +   T+  + ++      
Sbjct: 485 VVENFEFSARPLGSDRMSYLVANGRPLRNEAGKLQGAVMVYHDITQTKTAEHELRESERM 544

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL-----EQNTPSV 508
             +I++   D    I+R G I   +     +FG+P  + L +     +            
Sbjct: 545 AHAIIDTALDAFVQIDRTGAITEWSPHAETMFGWPRNEALGRHMADLIFCSEQIGELAVR 604

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS--LTMHDISEWKQ 566
             +++  I        +E   +        + + + +  L  +  Y       D+++   
Sbjct: 605 YRNFIESIERGGSGYRIEIEAVRR--NGTPIQVEVSMTALSRNDGYVLNAFFRDLTDKTI 662

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
            + +L  A+K+              ++H+    LT I G  +++          P     
Sbjct: 663 AEQQLRQAQKM-----ESIGQLTGGIAHDFNNMLTVITGTIDILA---ASVADRPECAAI 714

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
              I  + +   ++   LL  ++    K  L       +  +SE   L++    E  I I
Sbjct: 715 TRLISEAADRGAELTRHLLAFAR----KQPLEPCETDPNVVLSELQILLRPTLGEH-IEI 769

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH--------------T 732
           R S  + +  I  D   ++   +N+  NA    P GG + + T +               
Sbjct: 770 RESLQDGVWPIFVDRGQLEAALVNLAVNARDAMPEGGTLTLETRNTMIDQDFVRRYGEGE 829

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
             + V++ V DTG G+      +   PF          G+GTGLGL +    +  + G  
Sbjct: 830 PGQYVMITVTDTGCGIAEAIRVRVFDPFFTTK----EVGKGTGLGLSMVYGFIKQSGGHI 885

Query: 793 YIFSTPAKGTLIEIIFPLYDTSH 815
            ++S    GT   I  P   +  
Sbjct: 886 TLYSEVGHGTAFRIYLPRAKSEA 908



 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/278 (9%), Positives = 59/278 (21%), Gaps = 21/278 (7%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-----DLLKRQNT 142
            ID  G + E S       G    + +G  + D+           +      + ++R  +
Sbjct: 558 QIDRTGAITEWSPHAETMFGWPRNEALGRHMADLIFCSEQIGELAVRYRNFIESIERGGS 617

Query: 143 -WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
            +  +       GT + V + + AL          G+                   ++  
Sbjct: 618 GYRIEIEAVRRNGTPIQVEVSMTALSRND------GYVLNAFFRDLTDKTIAEQQLRQAQ 671

Query: 202 ------KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255
                 +    +        +V     DI +                        +    
Sbjct: 672 KMESIGQLTGGIAHDFNNMLTVITGTIDILAASVADRPECAAITRLISEAADRGAELTRH 731

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
              +      E    +     +                  S +   +    +   L A  
Sbjct: 732 LLAFARKQPLEPCETDPNVVLSELQILLRPTLGEHIEIRESLQDGVWPIFVDRGQLEAAL 791

Query: 316 DEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTK 353
               NL     D  P    +         +  F+    
Sbjct: 792 ---VNLAVNARDAMPEGGTLTLETRNTMIDQDFVRRYG 826



 Score = 47.7 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 38/396 (9%), Positives = 88/396 (22%), Gaps = 39/396 (9%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIG-----MRLCDV----SDILHIDPNNHIGDLLKRQ 140
           DA G +   +    K  G      IG                  L  + +  +     R 
Sbjct: 428 DAGGSVVLTNVAAAKLFGQPID--IGNPQAYRSFERFCPDGVTPLPFEQSPLLRAF--RG 483

Query: 141 NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
                        G++    +     P+ +   +  G     + H            +  
Sbjct: 484 EVVENFEFSARPLGSDRMSYLVANGRPLRNEAGKLQGA--VMVYHDITQTKTAEHELRES 541

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV------- 253
           ++    + +                +     PH               H  D+       
Sbjct: 542 ERMAHAIIDTALDAFVQID---RTGAITEWSPHAETMFGWPRNEALGRHMADLIFCSEQI 598

Query: 254 -----LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
                        +    S    + +    N      +     L  N             
Sbjct: 599 GELAVRYRNFIESIERGGSGYRIEIEAVRRNGTPIQVEVSMTALSRNDGYVLNAFFRDLT 658

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
               A     +    E++ +         +  L     +  +L    SV D      ++ 
Sbjct: 659 DKTIAEQQLRQAQKMESIGQLTGGIAHDFNNMLTVITGTIDIL--AASVADRPECAAITR 716

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
           L+           + ++ +   +         + +     + L +   P    +      
Sbjct: 717 LISEAADRGAELTRHLLAFARKQPLEPCETDPNVVL----SELQILLRPTLGEHIEIRES 772

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
            Q+G+ P  VD    +  +    +      +A  +G
Sbjct: 773 LQDGVWPIFVDRGQLEAALVNLAVNAR---DAMPEG 805


>gi|298385109|ref|ZP_06994668.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
 gi|298262253|gb|EFI05118.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
          Length = 720

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 108/545 (19%), Positives = 206/545 (37%), Gaps = 53/545 (9%)

Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF----FVYSHG-NLFY-- 343
           +L   +     +L    H        E        V+  P+ +     ++  G  +    
Sbjct: 195 SLMALAVIYVIWLRRALHERSRRL--EIMRSYSSLVENMPVLYARVELIFDPGARIIDYV 252

Query: 344 ---ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400
               NP+F         + I            P  S     +   L   D   I     L
Sbjct: 253 YREVNPTFEKY--ILPKEKILGKKYSE---LNPDYSPELPDRYSELN--DNRQITFQYYL 305

Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
                  +    +T I      +       +    ++ +  + ++ ++    +L + L+A
Sbjct: 306 E------KTKTHLTVISIHSKTKGC----VDVFGVDNTELVLTQQMLKSTNHKLSAALDA 355

Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF--------LEQNTPSVMNHY 512
                   +    +LS N +   L+    E        +         +       +   
Sbjct: 356 ADMTPWKWDLRTGLLSCNVS-HDLYVTEEEVTHDGNLIIVPTSACFAKICDEDRERVRDA 414

Query: 513 LTEILSLDLRQTLEKITLGST-----KEEKLLSLRIIIKKLPFSS---CYSLTMHDISEW 564
              + + + ++  E+  +G       ++ + + +R  + +   +        T   +++ 
Sbjct: 415 FERLANGETQKMREEYRVGRQWLPSPQQNEWVEVRAAVDERDANGKPLSLIGTSMTVTQR 474

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           K+ +  L  AK  AE+ ++ KS FLA +SHEIRTPL AI+GFS ++ +   G   +    
Sbjct: 475 KEMEEALVQAKVKAEEANTLKSSFLANISHEIRTPLNAIVGFSSLLVSAERGI--SEEKQ 532

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           EY N I+ +  L+L +++D+LD+SKIE+G M   + PV +     E     +L   +  I
Sbjct: 533 EYINIIENNNTLLLQLISDVLDLSKIEAGTMEFDYAPVDVHGLFIELEDTFRLRNKKSGI 592

Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744
            I          + AD   + Q+ +N+++NA+ FT  G  I        +  +   V DT
Sbjct: 593 CICYHRRTTECVVKADRNRLVQVMMNLMNNAVKFTGEGS-IEFGFDVREDGFLHFYVTDT 651

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G G+    LE+    F ++ +      +GTGLGL + +A+V+   GK    S   +G+  
Sbjct: 652 GCGIPEERLEEIFGNFVKLNSF----VQGTGLGLTICRAIVERMGGKIGAVSRLGQGSTF 707

Query: 805 EIIFP 809
               P
Sbjct: 708 WFTLP 712


>gi|152994636|ref|YP_001339471.1| integral membrane sensor hybrid histidine kinase [Marinomonas sp.
           MWYL1]
 gi|150835560|gb|ABR69536.1| integral membrane sensor hybrid histidine kinase [Marinomonas sp.
           MWYL1]
          Length = 1057

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 82/291 (28%), Positives = 137/291 (47%), Gaps = 16/291 (5%)

Query: 537 KLLSLRIIIKKLPFSSCYSLTMHDI----SEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
               L +        +   L   D+       K  + + S AK+ A++ +  KS+FLA +
Sbjct: 503 GWFLLIVSSHTAEVENRVRLRTRDLQLANEHLKASELEQSKAKEEAQEANRAKSEFLANM 562

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHEIRTPL  +IG   ++ N +  P         A    +S   +LDI+ND+LD+SKIE 
Sbjct: 563 SHEIRTPLNGVIGCLSLLMNTKLQP----DQSNLAKISQQSAESLLDIINDILDLSKIEM 618

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI--LADLRSVKQIALN 710
           G + L  +   L   + E  ++  L A EK I++  S    IP +    D   +KQ+ +N
Sbjct: 619 GTLVLDKQEFELRALIEEVTNIFVLKAEEKGIVLN-SPTTPIPNVTLFGDRLRIKQVLVN 677

Query: 711 ILSNAIHFTPSGGQIIISTTHTS--NEEVILRV--RDTGVGMTNYELEKAMKPFGQIPNS 766
           ++ NA+ FT  G ++ +        ++ VILR+   D+G+G++        + F Q   S
Sbjct: 678 LMGNAVKFTQEG-EVALRFAIEPLADDSVILRIVIEDSGIGISKENQSHLFQRFKQADGS 736

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
              +  G+GLGL ++K ++ A  G+  + S   +G+      PL   S   
Sbjct: 737 TTRKFGGSGLGLAISKEIIQAMDGEIGLNSVEGQGSSFWFRIPLSVVSTAE 787


>gi|94264437|ref|ZP_01288226.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93455127|gb|EAT05349.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 399

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 71/254 (27%), Positives = 129/254 (50%), Gaps = 13/254 (5%)

Query: 565 KQEKNKLSHAK---KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           ++ +     A+   + A+  +  KS+FLA +SHEIRTP+  +IG + ++ ++        
Sbjct: 143 RRLEEAAVQAEELAREAQAANIAKSEFLANMSHEIRTPMNGVIGMASLLLSEDLTA---- 198

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
             + Y   I  SG  +L+++N +LD SKIE+G++ L + P S  E V E + L+Q  A  
Sbjct: 199 EQLSYVKVIITSGEALLELINQILDFSKIEAGRLELDYRPFSPRELVQEVVLLLQPQAAA 258

Query: 682 KRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNE---- 735
           + + +    + ++P  +  D   ++Q+ LN++ NAI FT  GG  I +S           
Sbjct: 259 QNLALTCEISPSLPAIVEGDPVRLRQVLLNLVGNAIKFTEVGGVAIELSPAPADPAAPDF 318

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
                V+D+G+G+   +++   + F Q+  S   +  GTGLGL + + +V+   G+  + 
Sbjct: 319 SCHFAVKDSGIGIPAEKIDLLFQRFQQLDGSTCRKYGGTGLGLAICRRLVELMGGEVGVE 378

Query: 796 STPAKGTLIEIIFP 809
           S   KG+      P
Sbjct: 379 SEVGKGSTFWFTVP 392


>gi|242783972|ref|XP_002480293.1| sensor histidine kinase/response regulator, putative [Talaromyces
            stipitatus ATCC 10500]
 gi|218720440|gb|EED19859.1| sensor histidine kinase/response regulator, putative [Talaromyces
            stipitatus ATCC 10500]
          Length = 1900

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 100/672 (14%), Positives = 219/672 (32%), Gaps = 76/672 (11%)

Query: 202  KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
                        +       +++   ++    L  +++ S   +       V  +     
Sbjct: 785  ASEPGTTPAIGQNVDQSDGYFNLHQVRNSAAPLTARSRGSRSRQNLYPSIPVSPSIARSK 844

Query: 262  LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
               EE  L    D  T + +  + +    +    S       +              E++
Sbjct: 845  SVREEDWLG--RDSRTTDQSHDSGRPTPASAPTRSSSRNASTTSVIAQLQREGVSISEHI 902

Query: 322  TPETVDKCPIPFFVY--SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
                ++  P+  F+   S G + + N  F    +    +        +           +
Sbjct: 903  FQLMLNSVPLHLFLAKASSGEVLWTNSKFDAYRRSHPQEQSIRDPWQNV----HPEEVES 958

Query: 380  AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
              K         +      R+     +        F      +Q  + +   G   +  +
Sbjct: 959  LSKQWHKALQTGSQFTERVRVKRF-NDDNAYRWFIFRANPLLSQTGQVVSWIGSFLDIHE 1017

Query: 440  TRINKRKMEIEVM------QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
              +++ +   E        +  ++  +    +        ++S N       G  +E+ +
Sbjct: 1018 QHVSELRAAQERETFATNAKYRALANSIPQIVFEATELRGLISANEQWHLYTGQSIEEAM 1077

Query: 494  RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--------------------------- 526
               FT ++  +         +EI        +                            
Sbjct: 1078 NYGFTAYIHPDDLEKCGILSSEIFRGRTSSDVASKHPDVGPLKLFANGVTPGLIELVNQG 1137

Query: 527  ---------------KITLGSTKEEKLLSLRIIIKKLP------FSSCYSLTMHDISEWK 565
                                 +K        + + K+         + +  T  DI++ K
Sbjct: 1138 IVNSQQDENGRIFYTTELRIRSKGGGYRWHLVRLVKVETSNFGDDEASWYGTCTDINDRK 1197

Query: 566  QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
              + +L+ A +   +E   K+ F + +SHEIRTPL  I+G    I +       +     
Sbjct: 1198 LLERELNKAMQKLNREMESKTKFFSNMSHEIRTPLNGILGTIPFILDTTL----DHEQRR 1253

Query: 626  YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
              + I  S   + ++V+++LD+S++E+GKMN+      L   + + I  V   A +K + 
Sbjct: 1254 MLDTIQNSSTNLRELVDNILDVSRVEAGKMNMVKSWFHLRSVLEDVIDTVAPRAIDKGLE 1313

Query: 686  IRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE--------E 736
            I      ++P  ++ D   ++Q+ +N++ NA+ FTP G      + +             
Sbjct: 1314 INYLMDTDVPDMVIGDRFRIRQVLINLMGNAVKFTPHGEIYTRCSVYREPGVPLRDTELL 1373

Query: 737  VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
            +   V DTG G +N + ++ M+ F Q+  +   +  G+GLGL L+K +V+ + GK    S
Sbjct: 1374 LNFEVVDTGKGFSNTDAQRLMQRFSQLGGNGSQQNAGSGLGLFLSKQLVEMHGGKLTPSS 1433

Query: 797  TPAKGTLIEIIF 808
               +G       
Sbjct: 1434 REGQGAKFSFYI 1445


>gi|161504417|ref|YP_001571529.1| phosphate regulon sensor protein [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160865764|gb|ABX22387.1| hypothetical protein SARI_02528 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 431

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 75/427 (17%), Positives = 156/427 (36%), Gaps = 37/427 (8%)

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             +L             L  + W     L +         +        G+    +  + 
Sbjct: 33  WFLLAAVTGLLAWHFWNLLRLSW----WLWVDRSMTPPPGRGSWEPLLYGLHQMQLRNKK 88

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            +R++   + +  S  E+  D + +   EG I   N    +L G    D   +     L 
Sbjct: 89  RRRELGNLIKRFRSGAESLPDAVVLTTEEGGIFWCNGLAQQLLGLRWPDDNGQNILNLLR 148

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
               +               + L +         + L +R++           +   D++
Sbjct: 149 YPEFTQYL----------KARDLSRPLHLVLNTGRHLEIRVMPY---TDKQLLMVARDVT 195

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  Q +                + +F A VSHE+RTPLT + G+ E+++ Q        +
Sbjct: 196 QMHQLEG--------------ARRNFFANVSHELRTPLTVLQGYLEMMQEQTLEGATREK 241

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                + +      +  +V  LL +SKIE+  + L  E V +   +       Q  +  K
Sbjct: 242 A---LHTMREQTYRMEGLVKQLLTLSKIEAAPVLLLNEKVDVPMMLRVVEREAQTLSQNK 298

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
                    +++  +L +   ++    N++ NA++ TP+G  I +S  H  +      V+
Sbjct: 299 H-TFTFEVDDSL-NVLGNEEQLRSAISNLVYNAVNHTPAGTHITVSWRHVVHG-AEFCVQ 355

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G G+    + +  + F ++  ++  +  G+GLGL + K  ++ +  +  + S+P KGT
Sbjct: 356 DNGPGIAAEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHALNHHESRLEVDSSPGKGT 415

Query: 803 LIEIIFP 809
               + P
Sbjct: 416 RFSFVLP 422


>gi|113866854|ref|YP_725343.1| signal transduction histidine kinase [Ralstonia eutropha H16]
 gi|113525630|emb|CAJ91975.1| signal transduction histidine kinase containing a receiver domain
           (hybrid) and a PAS sensor domain [Ralstonia eutropha
           H16]
          Length = 569

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 91/407 (22%), Positives = 175/407 (42%), Gaps = 17/407 (4%)

Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465
           +       + +         + M +   +    D        E E      + +     I
Sbjct: 18  DSGRPAIASCVQTPDRRLRGQIMRRQPHDGSGKDRPSALDFREGEP-HFRLLADGIPHMI 76

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
              + +G I   NR  +   G  +E      +   +     +    +  + ++      +
Sbjct: 77  MTADADGRIDYCNRRWTSYTGLSLEQTRSGAWKSAVHPEDYARNIGHWADAVARGCEYEI 136

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKE 581
           E        +            L  +      +  +  DI   KQ +         AE  
Sbjct: 137 EYRL-KRASDGAYRWHLERGSPLKDADGKIVKWLASGTDIEALKQAQAS-------AESA 188

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
           +  KS+FL+ +SHE+R PL AI+GF++++ ++   P          + I ++G  +L+++
Sbjct: 189 NHAKSEFLSSMSHELRNPLNAILGFAQLMASE--APPPTASQQASIDQILKAGWHLLELI 246

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701
           N++LD+++IE+G+ +L  EPVS+ + + E  ++++  A ++ + +R         + AD 
Sbjct: 247 NEVLDLARIEAGQASLSPEPVSVIDTLHECQAMLEQQALKRSVRMRFPAVEPPCFVRADR 306

Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761
             +KQI LN+LSNAI +    G + +  T T+   V + VRDTGVG+T   L +  +PF 
Sbjct: 307 TRLKQILLNLLSNAIKYNRDQGSVDVQVT-TTGHRVGVSVRDTGVGLTPERLAQLFQPFN 365

Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           ++   +    EGTG+GL +AK + +   G     STP  G++  +  
Sbjct: 366 RL-GHEAGPVEGTGIGLVVAKRLAELMGGTISAKSTPGVGSVFRVEL 411



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/261 (9%), Positives = 68/261 (26%), Gaps = 10/261 (3%)

Query: 52  SNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAF 111
                  ++  S  ++ + E  F               DA G +   +       G    
Sbjct: 43  QPHDGSGKDRPSALDFREGEPHFRLLADGIP-HMIMTADADGRIDYCNRRWTSYTGLSLE 101

Query: 112 KMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYS 170
           +                 N  H  D + R   +              Y        P+  
Sbjct: 102 QTRSGAWKSAVHPEDYARNIGHWADAVARGCEYE-IEYRLKRASDGAYRWHLERGSPLKD 160

Query: 171 RNREFSGFRGFGIVHVNRVDNDPRALGKRL----DKKFSHLHEIKKGHSSVEKEKYDIFS 226
            + +   +   G           +A  +       +  S +    +   +       + +
Sbjct: 161 ADGKIVKWLASGT--DIEALKQAQASAESANHAKSEFLSSMSHELRNPLNAILGFAQLMA 218

Query: 227 QQSPPPHLRMKNKVSSLTEYYAHKDDVL-KTEKYPLLTSEESSLPEQEDFHTINLNQYTK 285
            ++PPP    +  +  + +   H  +++ +      + + ++SL  +       L++   
Sbjct: 219 SEAPPPTASQQASIDQILKAGWHLLELINEVLDLARIEAGQASLSPEPVSVIDTLHECQA 278

Query: 286 KQYFGTLQNNSKESFEYLSHR 306
                 L+ + +  F  +   
Sbjct: 279 MLEQQALKRSVRMRFPAVEPP 299



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/174 (9%), Positives = 36/174 (20%), Gaps = 7/174 (4%)

Query: 290 GTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSF 348
             L+        +         +  F EGE       D  P         G + Y N  +
Sbjct: 33  RRLRGQIMRRQPHDGSGKDRPSALDFREGEPHFRLLADGIPHMIMTADADGRIDYCNRRW 92

Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
              T   S++        S +       +       +    +             + +  
Sbjct: 93  TSYTGL-SLEQTRSGAWKSAVHPEDYARNIGHWADAVARGCE-----YEIEYRLKRASDG 146

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
                        +   + +       +    +  +   E         L + S
Sbjct: 147 AYRWHLERGSPLKDADGKIVKWLASGTDIEALKQAQASAESANHAKSEFLSSMS 200


>gi|148265401|ref|YP_001232107.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter
           uraniireducens Rf4]
 gi|146398901|gb|ABQ27534.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter
           uraniireducens Rf4]
          Length = 775

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 108/748 (14%), Positives = 230/748 (30%), Gaps = 52/748 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147
           ID  G +  ++    +  G    ++IG     +           H               
Sbjct: 50  IDNSGTVLLVNARAEQMFGYPTKELIGKPHSILIPERFRKAHEEHEAHFFAEPRIRPMGQ 109

Query: 148 TL----WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
            L       +G+   V I L+ +         +G      V          +  +  ++ 
Sbjct: 110 LLDLAGRRRDGSEFPVEISLSFI------ETINGVLVLAFVSDMTFRKQYESRLQDSEEL 163

Query: 204 FSHLHEIKKGHSS--VEKEKYDIFSQQSPPPHLRMKNKVS---SLTEYYAHKDDVLKTEK 258
           F    E  K ++   ++ +   +              K       + +Y  ++       
Sbjct: 164 FRIQVECVKDYAIFMLDAQGNVLNWNVGAERLKGYGEKEIIGRHFSCFYPEEERDAGKPA 223

Query: 259 YPLLTSEESSLPEQEDFH-TINLNQYTKKQYFGTLQNN----SKESFEYLSHRNHPSLSA 313
             L  + +    E E +    + +++        L++        S           +  
Sbjct: 224 EELKKAADEGRVEGEGWLIRKDGSRFWADVIITALRDENGNLRGFSKVTRDISGRKMVED 283

Query: 314 YFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                E          P           +   NPS      Y  +D++E    L  L   
Sbjct: 284 ALRFSEARYRALFRDNPTMIVTLDTEWTMLSVNPSCASQLGYT-IDELEGQSVL-KLFHE 341

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
                        L   D+       +   I+ + E  L +  I     +     +    
Sbjct: 342 DDRPAVAEQLHACLRNPDQVHRW---QFRKIRKDGE-VLWVEEIAQAVHDLNGT-LNVLV 396

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVED 491
           +  +  + +  +  +     +     +AT   + I +  +G  +  N A  ++ GY  ++
Sbjct: 397 VCQDVTERKRVEEALIRSEQKFSLAFQATPTVLVIASLEDGRYMEVNEAFERVMGYRRDE 456

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL--SLRIIIKKLP 549
           ++ +  ++ L           +  +L+    +  E      +K    +       I ++ 
Sbjct: 457 VIGRS-SLELHIWQKPEDRAMVLRMLAAGK-KVRELEIGFRSKPGTFIVGLYSAEIIEIG 514

Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKK-------IAEKESSHKSDFLARVSHEIRTPLTA 602
              C    ++DI+  K+ + ++              E  +     F   VSH++R PLT 
Sbjct: 515 TQRCLLSLVNDITARKRAEEEVEILNTNLAARAFELETANRELEAFSYSVSHDLRKPLTV 574

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           I G+ + I  +  G   N +   Y   I+     +  +++ LL+ S++    +    E +
Sbjct: 575 INGYCQ-IIQESCGNNLNAQCQGYLQEINDGTLSMNQLIDALLNFSRL--AHIEPRRETI 631

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT--P 720
            L     E    ++L    +R+        +      D   ++ +  N+L NA  +T   
Sbjct: 632 DLSAMAHEVAEELKLVEPGRRVTF---LITDGVSADGDAGLLRVVLDNLLGNAWKYTGTR 688

Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
             G I   TT    +     VRD G G    + +K   PF ++P        G G+GL  
Sbjct: 689 DEGIIEFGTTKVDGKPACF-VRDNGAGFDMADADKLFAPFQRLPG--TDEFRGHGIGLAT 745

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            + ++  + G+ +    P KG       
Sbjct: 746 VERIIQRHGGRVWAKGEPGKGATFYFTL 773



 Score =  121 bits (304), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 34/427 (7%), Positives = 108/427 (25%), Gaps = 35/427 (8%)

Query: 186 VNRVDNDPRALGKRLDKKF--------------SHLHEIKKGHSSVEKEKYDIFSQQSPP 231
               +   +    R+ ++               + L  + +G   ++     +       
Sbjct: 5   DLDKEKARQEQELRIQRQIAFASGLFQGDVTVRTLLESLAEGIVIIDNSGTVLLVNARAE 64

Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYP-----LLTSEESSLPEQEDFHTINLNQYTKK 286
                  K      +     +  +                  + +  D      +     
Sbjct: 65  QMFGYPTKELIGKPHSILIPERFRKAHEEHEAHFFAEPRIRPMGQLLDLAGRRRDGSEFP 124

Query: 287 QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF------FVYSHGN 340
                    +      L+  +  +    ++     + E                + + GN
Sbjct: 125 VEISLSFIETINGVLVLAFVSDMTFRKQYESRLQDSEELFRIQVECVKDYAIFMLDAQGN 184

Query: 341 LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400
           +   N     L  Y   + I      S      +       + +     +          
Sbjct: 185 VLNWNVGAERLKGYGEKEIIGR--HFSCFYPEEERDAGKPAEELKKAADEGR---VEGEG 239

Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
             I+ +     A   I     ++       + +  +    ++ +  +     +  ++   
Sbjct: 240 WLIRKDGSRFWA-DVIITALRDENGNLRGFSKVTRDISGRKMVEDALRFSEARYRALFRD 298

Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520
               I  ++ E  +LS N + +   GY ++++  +       ++    +   L   L   
Sbjct: 299 NPTMIVTLDTEWTMLSVNPSCASQLGYTIDELEGQSVLKLFHEDDRPAVAEQLHACLRN- 357

Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---YSLTMHDISEWKQEKNKLSHAKKI 577
             Q          K+ ++L +  I + +   +      +   D++E K+ +  L  +++ 
Sbjct: 358 PDQVHRWQFRKIRKDGEVLWVEEIAQAVHDLNGTLNVLVVCQDVTERKRVEEALIRSEQK 417

Query: 578 AEKESSH 584
                  
Sbjct: 418 FSLAFQA 424



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 52/459 (11%), Positives = 118/459 (25%), Gaps = 41/459 (8%)

Query: 55  TDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI 114
           +D        +   DSE  F            + +DA G +   +    +  G    ++I
Sbjct: 145 SDMTFRKQYESRLQDSEELFRIQVECVKDYAIFMLDAQGNVLNWNVGAERLKGYGEKEII 204

Query: 115 GMRLCDVSDILHID---PNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSR 171
           G            D   P   +      +    G+  L   +G+  +  + + AL     
Sbjct: 205 GRHFSCFYPEEERDAGKPAEELKKA-ADEGRVEGEGWLIRKDGSRFWADVIITAL--RDE 261

Query: 172 NREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFS--QQS 229
           N    GF    +              +  + ++  L             ++ + S     
Sbjct: 262 NGNLRGFSK--VTRDISGRKMVEDALRFSEARYRALFRDNPTMIVTLDTEWTMLSVNPSC 319

Query: 230 PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE---DFHTINLNQYTKK 286
                   +++   +      +D        L     +              +      +
Sbjct: 320 ASQLGYTIDELEGQSVLKLFHEDDRPAVAEQLHACLRNPDQVHRWQFRKIRKDGEVLWVE 379

Query: 287 QYFGTLQNNSKESFEYL---SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS--HGNL 341
           +    + + +      +          +       E          P    + S   G  
Sbjct: 380 EIAQAVHDLNGTLNVLVVCQDVTERKRVEEALIRSEQKFSLAFQATPTVLVIASLEDGRY 439

Query: 342 FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401
              N +F  +  Y+  + I    G S+L         +    + +  + +          
Sbjct: 440 MEVNEAFERVMGYRRDEVI----GRSSLELHIWQKPEDRAMVLRMLAAGKKVRELE---- 491

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
            I +  +    +  +   +  +         +  +    +  + ++EI    L +     
Sbjct: 492 -IGFRSKPGTFIVGLYSAEIIEIGTQRCLLSLVNDITARKRAEEEVEILNTNLAA----- 545

Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
                   R   + + NR +   F Y V   LRKP TV 
Sbjct: 546 --------RAFELETANRELEA-FSYSVSHDLRKPLTVI 575


>gi|15601492|ref|NP_233123.1| sensor histidine kinase LuxQ [Vibrio cholerae O1 biovar eltor str.
           N16961]
 gi|121585608|ref|ZP_01675404.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae
           2740-80]
 gi|153819423|ref|ZP_01972090.1| sensor histidine kinase LuxQ [Vibrio cholerae NCTC 8457]
 gi|153820666|ref|ZP_01973333.1| sensor histidine kinase LuxQ [Vibrio cholerae B33]
 gi|227812303|ref|YP_002812313.1| sensor histidine kinase LuxQ [Vibrio cholerae M66-2]
 gi|229506107|ref|ZP_04395616.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae BX
           330286]
 gi|229510036|ref|ZP_04399516.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae B33]
 gi|229516403|ref|ZP_04405850.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae RC9]
 gi|229605638|ref|YP_002876342.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae
           MJ-1236]
 gi|254849896|ref|ZP_05239246.1| sensor histidine kinase LuxQ [Vibrio cholerae MO10]
 gi|262152398|ref|ZP_06028531.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae INDRE
           91/1]
 gi|298499532|ref|ZP_07009338.1| sensor histidine kinase LuxQ [Vibrio cholerae MAK 757]
 gi|50401170|sp|Q9KLK7|LUXQ_VIBCH RecName: Full=Autoinducer 2 sensor kinase/phosphatase luxQ
 gi|9658157|gb|AAF96635.1| sensor histidine kinase LuxQ [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121550225|gb|EAX60239.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae
           2740-80]
 gi|126510031|gb|EAZ72625.1| sensor histidine kinase LuxQ [Vibrio cholerae NCTC 8457]
 gi|126521709|gb|EAZ78932.1| sensor histidine kinase LuxQ [Vibrio cholerae B33]
 gi|227011445|gb|ACP07656.1| sensor histidine kinase LuxQ [Vibrio cholerae M66-2]
 gi|229346284|gb|EEO11255.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae RC9]
 gi|229352481|gb|EEO17421.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae B33]
 gi|229356458|gb|EEO21376.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae BX
           330286]
 gi|229372124|gb|ACQ62546.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae
           MJ-1236]
 gi|254845601|gb|EET24015.1| sensor histidine kinase LuxQ [Vibrio cholerae MO10]
 gi|262030849|gb|EEY49480.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae INDRE
           91/1]
 gi|297541513|gb|EFH77564.1| sensor histidine kinase LuxQ [Vibrio cholerae MAK 757]
          Length = 857

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 82/377 (21%), Positives = 161/377 (42%), Gaps = 21/377 (5%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           R++  +  Q   +         + N  G ++  N +    F              FL + 
Sbjct: 350 RRLANKEKQFEDLFNFALSPTMLWNTSGRLIRMNPSAQIQFLREDAQ------NHFLFEI 403

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT-MHDISE 563
               +   +T     +    +         + ++    +    +       +T   DI+ 
Sbjct: 404 LERQLLPTITNAAQGNNPSDVTTEV-----DGRVYRWNLSPIMVEGQIISIITQGQDITT 458

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + + +   A++ AE+ +  +++FLA++SHE+RTPL  ++G S+++K        N   
Sbjct: 459 IAEAEKQSQAARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRTPL----NDEQ 514

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            E+   +  SG  +L ++ND+LD S++E GK  +      L E V     + +   NEK 
Sbjct: 515 REHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKNEFRLKELVCAIDRIYRPLCNEKG 574

Query: 684 ILIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EVIL 739
           + +  +        + +D   + QI  N+L+NAI FT  G  I +       +   ++++
Sbjct: 575 LELVVNSNITTAAIVRSDQIRINQILFNLLNNAIKFTHQGS-IRVELQLIEGDPLAQLVI 633

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
           +V DTG+G+   +L    +PF Q  ++      G+GLGL +  ++V+   G+ ++ S   
Sbjct: 634 QVVDTGIGIREQDLTVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHVSSEYG 693

Query: 800 KGTLIEIIFPLYDTSHP 816
            GT  EI  P+     P
Sbjct: 694 IGTRFEIQLPIELVEKP 710


>gi|222151384|ref|YP_002560540.1| hypothetical protein MCCL_1137 [Macrococcus caseolyticus JCSC5402]
 gi|222120509|dbj|BAH17844.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 585

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 82/369 (22%), Positives = 159/369 (43%), Gaps = 40/369 (10%)

Query: 450 EVMQLC-SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
               L   ++ A  DG+   N        N    K      +DI ++             
Sbjct: 249 SERNLRDRLINAMEDGVLSFNMHLEKQLQNPMAKKFL----DDINQQQI---------EA 295

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF---SSCYSLTMHDISEWK 565
           ++  + +++  +     E  T      +K   L +     P     +     + D++E K
Sbjct: 296 LSDTVNQVMQSEDTIYNEITT-----NDKHYVLIVSPVDNPEIKQGNGAVAIIRDMTEEK 350

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           +                  K  F+A VSHE+RTP+  + G++E I +       +    E
Sbjct: 351 KI--------------DQMKQMFIANVSHELRTPIQMLQGYTEAILDGIVSEKSD--VDE 394

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           + N I      +  +VN+LL++++I++G+  L+ E   ++E +   I   +  A +    
Sbjct: 395 FLNIILDESKRLNRLVNELLNVARIDAGEQVLNLEATDIEELIERTIMNFKHVAEKHETE 454

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           ++T ++++  +   D   + Q+  NI+ NA+ +T +G  I I T    +E +I+R+ DTG
Sbjct: 455 LQTHYSHHS-KAWLDYDKMIQVITNIIDNALRYTVAGDVISIHTD-EDDENLIIRISDTG 512

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           VG+    ++   + F ++  ++     GTGLGL + K++V+ + G   + ST  KGT   
Sbjct: 513 VGIAPEHIDNIFERFYKVDQARTRGKHGTGLGLFIVKSIVEGHHGSINVDSTVGKGTTFV 572

Query: 806 IIFPLYDTS 814
           I  P  D +
Sbjct: 573 ISIPKVDDT 581


>gi|163744984|ref|ZP_02152344.1| multi-sensor hybrid histidine kinase [Oceanibulbus indolifex
           HEL-45]
 gi|161381802|gb|EDQ06211.1| multi-sensor hybrid histidine kinase [Oceanibulbus indolifex
           HEL-45]
          Length = 547

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 93/489 (19%), Positives = 176/489 (35%), Gaps = 37/489 (7%)

Query: 324 ETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
              D   I   + + G L   N  F+ LT Y     I     +S L +            
Sbjct: 74  RAFDSHAIVNILDTCGVLKQVNDRFIELTGYTRDQLIGQP--VSMLYNE---RSRELASE 128

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
           +                  ++      +          N+  +         +       
Sbjct: 129 MRAALKQGKTWQGE---TPLRCADGRVIQTQCTVMPLFNKSGDWTGSISARTDVTH---- 181

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
             ++  E     ++ E   D I I++ E       NR      G+  E    +      E
Sbjct: 182 ANELLAERDTAETLYE-LRDDIWIVDAETHRFSYMNRVAMSRTGWRTEPYSERTLDDLAE 240

Query: 503 QNTPSVMNHYLTEILSLDLRQT-LEKITLGSTKEEKLLSLRIIIKKLPF-SSCYSLTMHD 560
           ++    +      + +        +              + + +  +   +  + + ++D
Sbjct: 241 KSGSHAILEACQSLAASGKVMAQFDTEMF-----GNHFQVTVKLLPIGGKAGRFLIMLND 295

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           IS+   E+                KS+F++ VSHE+R+PLT+I G   ++ ++  G L +
Sbjct: 296 ISDIIGEE--------------RMKSEFISMVSHELRSPLTSIKGSMGLLLSRAAGELPS 341

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
            +         R+ + ++ I+ND+LD+ KI +G++  + E   + E + E  +       
Sbjct: 342 -KARALLEISHRNADRLVLIINDILDLEKISTGQLEFNLEETDIAELLRETSAANSSLEQ 400

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
              + I+    +   ++  D   V Q+  N LSNA  F+  G +I I     ++ E+ + 
Sbjct: 401 RHGVRIQVENTDTPMQVTTDPNRVIQVLTNFLSNAAKFSKPGERITIRAE-ENDHELRIS 459

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V D G G+   E  K  + F  + NS++    GTGLGL + KA+V+   GK    S    
Sbjct: 460 VSDRGQGIPASEEHKVFQRFADLSNSKRAEKGGTGLGLSVCKAIVENLGGKIGFDSREGF 519

Query: 801 GTLIEIIFP 809
           GT      P
Sbjct: 520 GTTFYFTLP 528



 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 47/391 (12%), Positives = 111/391 (28%), Gaps = 53/391 (13%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D  G LK++++   +  G    ++IG  +  + +    +  + +   LK+  TW G+T 
Sbjct: 85  LDTCGVLKQVNDRFIELTGYTRDQLIGQPVSMLYNERSRELASEMRAALKQGKTWQGETP 144

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           L   +G  +     +  +P+++++ +++G          R D                L+
Sbjct: 145 LRCADGRVIQTQCTV--MPLFNKSGDWTGSI------SARTDVTHANELLAERDTAETLY 196

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           E++     V+ E +                                   +  +  +   +
Sbjct: 197 ELRDDIWIVDAETHRFSYMN-----------------------------RVAMSRTGWRT 227

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
            P  E        +          Q+ +                   +   N    TV  
Sbjct: 228 EPYSERTLDDLAEKSGSHAILEACQSLAASGKVM--------AQFDTEMFGNHFQVTVKL 279

Query: 329 CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388
            PI       G           +   + +   E    +S  L +P  S   ++  ++   
Sbjct: 280 LPIG---GKAGRFLIMLNDISDIIGEERMKS-EFISMVSHELRSPLTSIKGSMGLLLSRA 335

Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
           +      A A L     N +  + +     +        +  N  E +  +         
Sbjct: 336 AGELPSKARALLEISHRNADRLVLIINDILDLEKISTGQLEFNLEETDIAELLRETSAAN 395

Query: 449 IEVMQLCSI---LEATSDGI-AIINREGIIL 475
             + Q   +   +E T   +    +   +I 
Sbjct: 396 SSLEQRHGVRIQVENTDTPMQVTTDPNRVIQ 426


>gi|220930742|ref|YP_002507651.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           cellulolyticum H10]
 gi|220001070|gb|ACL77671.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           cellulolyticum H10]
          Length = 617

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 81/370 (21%), Positives = 164/370 (44%), Gaps = 28/370 (7%)

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           I+   +D + I +  G IL  N ++ +L GY   D+  K                     
Sbjct: 233 IISKVTDMVIITDATGKILEANNSLKELSGYSDTDLSEKDIHTLFSPK------------ 280

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMH----DISEWKQEK 568
           +  D            TKE + + + I I ++          +  +     ++++   E+
Sbjct: 281 ICSDKSSVKLSGYKFLTKENRTIPVNISISQIYSEDKIILGTAYVLQKNLLNLTDKAAEE 340

Query: 569 NKLSHAKKIAEKE----SSHKSDFLARVSHEIRTPLTAIIG---FSEVIKNQRFGPLGNP 621
             ++       ++       K+DFL  VSHE+RTPL  +I     S +  +Q  G L   
Sbjct: 341 AAVTRYSSQTSEKLKEWDKLKTDFLCNVSHELRTPLNLMISSLKLSSLKISQNHGVLDTA 400

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
              ++ + ++++   +  I+N+++DI+KI++G + L+    ++ + V E +  V  +  +
Sbjct: 401 LMHKHFHIMNQNCFRLTRIINNIIDITKIDAGSLELNLSNNNIVDIVEETVLSVASHIKD 460

Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
           K I +          +  D   +++I LN++SNA+ F   G +I +S   + +  V + V
Sbjct: 461 KEITLIFDTDVEEKFLACDPDQIQRILLNLISNAVKFNNDGREIYVSIADSID-SVKISV 519

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
           +D G+G++        + F Q+  S   + EG+G+GL + + +V+ + G   + S P  G
Sbjct: 520 KDNGIGISLENQPLIFERFIQVDKSLTRQHEGSGMGLTITRYLVELHKGTIALESEPNIG 579

Query: 802 TLIEIIFPLY 811
           +   I  P+Y
Sbjct: 580 STFTITLPVY 589


>gi|209964224|ref|YP_002297139.1| cell cycle histidine kinase CckA [Rhodospirillum centenum SW]
 gi|209957690|gb|ACI98326.1| cell cycle histidine kinase CckA [Rhodospirillum centenum SW]
          Length = 831

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 103/670 (15%), Positives = 218/670 (32%), Gaps = 65/670 (9%)

Query: 173 REFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP 232
               GF   G+V + +     R            + +      +V      +        
Sbjct: 69  GSLLGFGALGLVWLVQRAAAGRQQD---QGLLGAVLDTVPDALAVLAPDGHLLLANRSFA 125

Query: 233 HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL 292
            L  ++         + +  +        + +               L+  +        
Sbjct: 126 ELLPQDGGGRTGGGGSVRTALAAAFPDLGMATLTRMEAAARQGRETVLDASSPSLRSARW 185

Query: 293 QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLL 351
           + ++        H    + S          P+ +D  P+   V    G L   N      
Sbjct: 186 RVSAVPLPGRPGHVLWRAASLPAPAYA--FPDALDGAPVGVLVADLDGMLLAVNARAAGW 243

Query: 352 TKYKSVDDIEIAGGLSTL---LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
               + D       L  +   L   +    +    V L R D + + A+           
Sbjct: 244 LDIPAGDVAARGLRLDQVVAGLPVAEARPADLPSEVALLRPDGSAMPANGYRIAEDGPDG 303

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468
               +                      +       ++ ME    +     E    G+A++
Sbjct: 304 RRDVLLLC-------------------DLSPDLPRRQAMERAERRFQRFFEYAPIGVALV 344

Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE-- 526
           + E  +   N     L G  +E++  +P  +  ++   + +   L ++L+          
Sbjct: 345 DPELRLAECNATFLSLAGSALEEVQGRPIGMAFQREKRADLVGRLLDVLNGREVSAGSAP 404

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
                      ++ L      L       L + D++E K  ++++  ++K+         
Sbjct: 405 IEISMRGAGGPMVHLFARRIDLDGEGGLVLHVVDMTEQKSLESQIVQSQKM-----QAIG 459

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
                V+H+    LTA+IGF +++  +     G+  + +    I ++ N   ++V  LL 
Sbjct: 460 QLAGGVAHDFNNLLTAMIGFCDLLLLRH--KPGDQSFSDIMQ-IKQNANRAANLVRQLLA 516

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706
            S+    +  L    +S+ + ++E  +L++     + I +R     ++  +  D   ++Q
Sbjct: 517 FSR----QQTLQPRVLSVTDVLAELSNLLRRLI-GENIELRMLHGRDLGLVKVDQGQLEQ 571

Query: 707 IALNILSNAIHFTPSGGQIIISTT--------------HTSNEEVILRVRDTGVGMTNYE 752
           + +N+  NA    P GG++ I T+                  + V++ V DTGVG+    
Sbjct: 572 VIINLAVNARDAMPGGGRLSIVTSNFSATGPVRRETEEMPPGDYVVIEVADTGVGIPREN 631

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
           L++   PF     S +  G GTGLGL     +V    G  ++ S P +G    I  P + 
Sbjct: 632 LQRIFDPFF----STKEVGSGTGLGLSTVYGIVRQTGGFIFVESAPDQGAKFSIFLPRHS 687

Query: 813 ----TSHPHD 818
               T+ P +
Sbjct: 688 EPVATAPPPE 697



 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/372 (8%), Positives = 86/372 (23%), Gaps = 31/372 (8%)

Query: 91  AHGYLKEISEELPKTI--GNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
             G+L   +    + +          G  +         D        ++       +T 
Sbjct: 113 PDGHLLLANRSFAELLPQDGGGRTGGGGSVRTALAAAFPDLGMATLTRMEAAARQGRETV 172

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           L     +       ++A+P+        G  G  +     +     A    LD       
Sbjct: 173 LDASSPSLRSARWRVSAVPL-------PGRPGHVLWRAASLPAPAYAFPDALDGAPV--- 222

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
               G    + +   +         L +     +       +         P+  +  + 
Sbjct: 223 ----GVLVADLDGMLLAVNARAAGWLDIPAGDVAARGLRLDQ----VVAGLPVAEARPAD 274

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL--SHRNHPSLSAYFDEGENLTPETV 326
           LP +      + +      Y              L              +  E       
Sbjct: 275 LPSEVALLRPDGSAMPANGYRIAEDGPDGRRDVLLLCDLSPDLPRRQAMERAERRFQRFF 334

Query: 327 DKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
           +  PI   +      L   N +FL L      +      G++   +         +  + 
Sbjct: 335 EYAPIGVALVDPELRLAECNATFLSLAGSALEEVQGRPIGMAFQREKRADLVGRLLDVLN 394

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
                           +++      + +     +   +    +       +  + +  + 
Sbjct: 395 GREVSAGSAPIEI---SMRGAGGPMVHLFARRIDLDGEGGLVLHVV----DMTEQKSLES 447

Query: 446 KMEIEVMQLCSI 457
           ++ ++  ++ +I
Sbjct: 448 QI-VQSQKMQAI 458



 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 50/150 (33%), Gaps = 3/150 (2%)

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468
            +++ + +          ++   G        +      + +   L ++L+   D +A++
Sbjct: 52  EAVSGSIVDGTVLVWLVGSLLGFGALGLVWLVQRAAAGRQQDQGLLGAVLDTVPDALAVL 111

Query: 469 NREGIILSTNRAVSKLF--GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
             +G +L  NR+ ++L                  L    P +    LT +     RQ  E
Sbjct: 112 APDGHLLLANRSFAELLPQDGGGRTGGGGSVRTALAAAFPDLGMATLTRM-EAAARQGRE 170

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556
            +   S+   +    R+    LP    + L
Sbjct: 171 TVLDASSPSLRSARWRVSAVPLPGRPGHVL 200


>gi|253570643|ref|ZP_04848051.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
 gi|251839592|gb|EES67675.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
          Length = 720

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 108/545 (19%), Positives = 207/545 (37%), Gaps = 53/545 (9%)

Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF----FVYSHG-NLFY-- 343
           +L   +     +L    H        E        V+  P+ +     ++  G  +    
Sbjct: 195 SLMALAVIYVIWLRRALHERSRRL--EIMRSYSSLVENMPVLYARVELIFDPGARIIDYV 252

Query: 344 ---ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400
               NP+F         + I            P  S     +   L   D   I     L
Sbjct: 253 YREVNPTFEKY--ILPKEKILGKKYSE---LNPDYSPELPDRYSELN--DNRQITFQYYL 305

Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
                  +    +T I      +       +    ++ +  + ++ ++    +L + L+A
Sbjct: 306 E------KTKTHLTVISIHSKTKGC----VDVFGVDNTELVLTQQMLKSTNHKLSAALDA 355

Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF--------LEQNTPSVMNHY 512
                   + +  +LS N +   L+    E        +         +       +   
Sbjct: 356 ADMTPWKWDLQTGLLSCNVS-HDLYVTEEEVTHDGNLIIVPTSACFAKICDEDRERVRDA 414

Query: 513 LTEILSLDLRQTLEKITLGST-----KEEKLLSLRIIIKKLPFSS---CYSLTMHDISEW 564
              + + + ++  E+  +G       ++ + + +R  + +   +        T   +++ 
Sbjct: 415 FERLANGETQKMREEYRVGRQWLPSPQQNEWVEVRAAVDERDANGKPLSLIGTSMTVTQR 474

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           K+ +  L  AK  AE+ ++ KS FLA +SHEIRTPL AI+GFS ++ +   G   +    
Sbjct: 475 KEMEEALVQAKVKAEEANTLKSSFLANISHEIRTPLNAIVGFSSLLVSAERGI--SEEKQ 532

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           EY N I+ +  L+L +++D+LD+SKIE+G M   + PV +     E     +L   +  I
Sbjct: 533 EYINIIENNNTLLLQLISDVLDLSKIEAGTMEFDYAPVDVHGLFIELEDTFRLRNKKSGI 592

Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744
            I          + AD   + Q+ +N+++NA+ FT  G  I        +  +   V DT
Sbjct: 593 CICYHRRTTECGVKADRNRLVQVMMNLMNNAVKFTGEGS-IEFGFDVREDGFLHFYVTDT 651

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G G+    LE+    F ++ +      +GTGLGL + +A+V+   GK    S   +G+  
Sbjct: 652 GCGIPEERLEEIFGNFVKLNSF----VQGTGLGLTICRAIVERMGGKIGAVSRLGQGSTF 707

Query: 805 EIIFP 809
               P
Sbjct: 708 WFTLP 712


>gi|256810598|ref|YP_003127967.1| integral membrane sensor signal transduction histidine kinase
           [Methanocaldococcus fervens AG86]
 gi|256793798|gb|ACV24467.1| integral membrane sensor signal transduction histidine kinase
           [Methanocaldococcus fervens AG86]
          Length = 632

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 71/248 (28%), Positives = 132/248 (53%), Gaps = 4/248 (1%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E K+   +L  + +  ++    KS+ ++ VSHE+RTPLT+I G+ E++ +   G L N  
Sbjct: 388 ELKRHTKELKESYEKLKEIDKLKSEIISIVSHELRTPLTSIKGYVELVLDGLMGEL-NSN 446

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                   + + + +  +++D+LD+SKIESG +    + V + + V + ++ +     EK
Sbjct: 447 QRRCLEIANNNIDRLKRLIDDMLDLSKIESGTIKFDIKDVKIKDMVVDVLNSLGPQIKEK 506

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
            I I+     N+     D   + Q+ +N++ NAI F+P  G I I      N    + ++
Sbjct: 507 NIEIKCEIEENL-TAKVDKDRITQVLINLIENAIKFSPVKGVIEIH-AFRDNNYAHIIIK 564

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G G+   +L+K    F Q+ N  +I+ +G GLGL + K++++A+ GK ++ S   KGT
Sbjct: 565 DYGPGIPKKDLDKIFDKFYQV-NFPKIKKDGAGLGLAICKSIIEAHGGKIWVESELGKGT 623

Query: 803 LIEIIFPL 810
              ++ P+
Sbjct: 624 SFHVLLPI 631


>gi|153824379|ref|ZP_01977046.1| sensor histidine kinase LuxQ [Vibrio cholerae MZO-2]
 gi|149741933|gb|EDM55962.1| sensor histidine kinase LuxQ [Vibrio cholerae MZO-2]
          Length = 857

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 82/377 (21%), Positives = 161/377 (42%), Gaps = 21/377 (5%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           R++  +  Q   +         + N  G ++  N +    F              FL + 
Sbjct: 350 RRLANKEKQFEDLFNFALSPTMLWNTSGRLIRMNPSAQIQFLREDAQ------NHFLFEI 403

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT-MHDISE 563
               +   +T     +    +         + ++    +    +       +T   DI+ 
Sbjct: 404 LERQLLPTITNAAQGNNPSDVTTEV-----DGRVYRWNLSPIMVEGQIISIITQGQDITT 458

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + + +   A++ AE+ +  +++FLA++SHE+RTPL  ++G S+++K        N   
Sbjct: 459 IAEAEKQSQAARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRTPL----NDEQ 514

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            E+   +  SG  +L ++ND+LD S++E GK  +      L E V     + +   NEK 
Sbjct: 515 REHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKNEFRLKELVCAIDRIYRPLCNEKG 574

Query: 684 ILIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EVIL 739
           + +  +        + +D   + QI  N+L+NAI FT  G  I +       +   ++++
Sbjct: 575 LELVVNSNITTAAIVRSDQIRINQILFNLLNNAIKFTHQGS-IRVELQLIEGDPLAQLVI 633

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
           +V DTG+G+   +L    +PF Q  ++      G+GLGL +  ++V+   G+ ++ S   
Sbjct: 634 QVVDTGIGIREQDLTVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHVSSEYG 693

Query: 800 KGTLIEIIFPLYDTSHP 816
            GT  EI  P+     P
Sbjct: 694 IGTRFEIQLPIELVEKP 710


>gi|126740052|ref|ZP_01755742.1| hypothetical protein RSK20926_15236 [Roseobacter sp. SK209-2-6]
 gi|126718871|gb|EBA15583.1| hypothetical protein RSK20926_15236 [Roseobacter sp. SK209-2-6]
          Length = 831

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 88/429 (20%), Positives = 167/429 (38%), Gaps = 29/429 (6%)

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR-------INKRKMEIEVMQLCSI 457
           W    +    +            +P           +         +R++E    +L   
Sbjct: 254 WQARAANPWPWRLVMLVAGTLVLIPFFAAGRLSAARKDIIKTLMRRERQLETLSRRLEVA 313

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV-FLEQNTPSVMNHYLTEI 516
           +E +  GI   + +   +  ++ + +++G   ++ +       F+           L   
Sbjct: 314 VEVSKIGIWEYDVKTQEVIWDQLLREIYGLERQEPISLDIWKGFIHPEDRDEAVKTLMRA 373

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-CYSLTMHDISE------------ 563
                  T E   L S   ++ +       K             D++             
Sbjct: 374 AEEGGYHTSEYRILQSDGNQRHIRTMGTTFKDGAGGMRMIGVNLDVTRDVHLREKLIEAN 433

Query: 564 --WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
               Q  N+L  A+  AE+    K++FLA +SHEIRTP+  IIG ++++     G     
Sbjct: 434 HALMQRNNELEEARIAAERADRAKTEFLANMSHEIRTPMNGIIGMADLMSESNLG----E 489

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
              +Y + I  S + +L I+ND+LD+S++E+GK+ +      L   +S A++L++  A E
Sbjct: 490 GERQYLDTIRDSSHALLKIINDILDLSRMEAGKLAISPVDFDLQRCISGAVNLLRPRARE 549

Query: 682 KRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVIL 739
           K + +  SF   +P  +  D   ++Q+ +N++ NA+ FT SGG  I +S        + +
Sbjct: 550 KGLWLSLSFEEGLPGLMRGDDGRIRQVLVNLVGNAVKFTHSGGVDIRVSKVAGDPYHLQI 609

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V DTG+G+   +       F Q   +      GTGLGL ++  +     G   +     
Sbjct: 610 EVEDTGIGIKPEQAAHIFDRFSQADAAITRSFGGTGLGLTISSILASRMGGGITLCEDKQ 669

Query: 800 KGTLIEIIF 808
            G    +  
Sbjct: 670 DGACFTLQL 678


>gi|186682032|ref|YP_001865228.1| integral membrane sensor hybrid histidine kinase [Nostoc
           punctiforme PCC 73102]
 gi|186464484|gb|ACC80285.1| integral membrane sensor hybrid histidine kinase [Nostoc
           punctiforme PCC 73102]
          Length = 629

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 80/273 (29%), Positives = 144/273 (52%), Gaps = 17/273 (6%)

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
              +L   +    T  +I E K+ + +L  A+++A+  S  KS+FLA +SHE+RTPL  I
Sbjct: 125 SPDQLEAINRILST--EIVERKRIEKELRQAEEVAQNSSQAKSEFLANMSHELRTPLNGI 182

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +G++++++        + +  +  + I + G+ +L ++ND+LD+SKIE+ K+ L+     
Sbjct: 183 LGYTQILQRTES---LSEKGRKGLSVIYQCGSHLLTLINDVLDLSKIEARKLELYPVDFY 239

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSG 722
           L   +     + ++ A +K I        N+P  I  D + ++Q+ +N+LSNA+ FT  G
Sbjct: 240 LPAFIDSVTEICRIRAEQKVIAFNIEIDPNLPTGIHGDEKRLRQVLINLLSNAMKFTHQG 299

Query: 723 GQIIISTTH---------TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
             +   T            +N ++   V DTG G+T  + EK  +PF Q+  SQ+ + EG
Sbjct: 300 S-VTFKTQVINQESNANGKTNYKIRFEVVDTGTGITPEQAEKIFQPFEQV-GSQKRQSEG 357

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           TGLGL +++ +V    G+  + S   KG+    
Sbjct: 358 TGLGLAISQKIVLLMGGQIKVQSEFGKGSTFWF 390


>gi|313890248|ref|ZP_07823882.1| PAS domain S-box protein [Streptococcus pseudoporcinus SPIN 20026]
 gi|313121353|gb|EFR44458.1| PAS domain S-box protein [Streptococcus pseudoporcinus SPIN 20026]
          Length = 452

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 87/378 (23%), Positives = 164/378 (43%), Gaps = 35/378 (9%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           R+    +  E  +L SIL   SDG+   +R G I+  N    K      E+ L+K  T  
Sbjct: 83  RLTHENLAQEKNRLASILAYMSDGVLATDRTGQIMMINETAQKQMNISREEALKKNITDL 142

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SL 556
           L  ++P      +++        TL +      +  + ++LR+        S +     +
Sbjct: 143 LGSDSPYTYRELVSQT----PIVTLNR----RDETGEFITLRLRFALNRRESGFISGLVV 194

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            +HD +E ++E+ +                 F++ VSHE+RTPLT++  + E +     G
Sbjct: 195 VLHDTTEQEKEERERRL--------------FVSNVSHELRTPLTSVKSYLEAL---DEG 237

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV- 675
            L       +        N ++ +++DLL++S+I++    L  E  +    ++  ++   
Sbjct: 238 ALKEDIAPSFIKVSLDETNRMMRMISDLLNLSRIDNQVTALAVEMTNFTAFMTSILNRFD 297

Query: 676 ----QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
               Q     K   I   +      +  D   + Q+  NIL+NAI ++P GG+I +    
Sbjct: 298 LVRNQNTVAGKTYEIIRDYPIKSIWLEIDNDKMTQVIENILNNAIKYSPDGGKIRVKMKT 357

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
           T + ++I+ + D G+G+   +L      F ++  ++     GTGLGL +AK +V  + G 
Sbjct: 358 TES-QLIISISDQGLGIPKKDLPLIFDRFYRVDKARSRAQGGTGLGLAIAKEIVKQHKGF 416

Query: 792 FYIFSTPAKGTLIEIIFP 809
            +  S   KG+   I+ P
Sbjct: 417 IWAKSDYGKGSTFTIVLP 434


>gi|206901128|ref|YP_002250960.1| sensory box histidine kinase [Dictyoglomus thermophilum H-6-12]
 gi|206740231|gb|ACI19289.1| sensory box histidine kinase [Dictyoglomus thermophilum H-6-12]
          Length = 350

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 80/360 (22%), Positives = 157/360 (43%), Gaps = 26/360 (7%)

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
             +   + E    GI I++++G+++  N    +LF         K     +       ++
Sbjct: 7   EERWKVLTENVQIGILIVDKDGLVIFANNKAKELFDIKNNKNNNKKLIELIPDY---EID 63

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570
               + L             G  K+     L +    L  +    L ++D +   + +  
Sbjct: 64  DLYKKTLQNKSYNKTNLNFWGKEKK----YLEVEAFYLSGNQEVLLIINDYTPLYRLEEN 119

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
                           +FL   SHE+RTPLT+I    ++   ++     +  Y E+  Y+
Sbjct: 120 FK--------------EFLGNASHELRTPLTSIQILIDLFSERKI--TLDEIYNEFFPYL 163

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
            +    +  +V++LL++S++E+G ++L  + V+L E + E +  +  + ++K + I    
Sbjct: 164 RKEVERMSKLVSNLLNLSRLEAGVIDLQLKEVNLTEIIMEIVDRLTPHISKKNLEINLKI 223

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
              +  + AD + V  I  NI+ NA+ +TP  G I I   +  ++ V+L V+DTG+G+  
Sbjct: 224 PEKVI-VSADPQHVDTIIFNIVENAVKYTPPSGSIEIGI-NEDSDNVVLWVKDTGIGIPE 281

Query: 751 YELEKAMKPFGQIPNSQQIRGE-GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            +L +    F ++  S+       TGLGL + K +++ +     + S   KGT  EII P
Sbjct: 282 KDLNRIFDRFYRVNKSRTNEDGFSTGLGLSIVKKLIERHGWSITVESKVNKGTKFEIIIP 341


>gi|83415010|dbj|BAD80468.2| two-component system sensory histidine kinase [Synechococcus
           elongatus PCC 6301]
          Length = 977

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 82/321 (25%), Positives = 152/321 (47%), Gaps = 10/321 (3%)

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
               L                     +I +       E   L        ++LR ++  L
Sbjct: 390 WAAHLGMRIEQLAHAADAMASGQLQQQIPTSGRD---ELTVLAQAFNRMAVTLRELLVSL 446

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                        +  ++  ++L  A++ AE  +  KS FLA +SHE+RTPL AIIG+SE
Sbjct: 447 EH-----RVQERTAALRETNDRLEQAREQAEAANQAKSAFLANMSHELRTPLNAIIGYSE 501

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
           ++  +    +     +     I+ +G  +L+++N +LD+SKIE+G+M L+ E  SL E +
Sbjct: 502 MMMEEAEDGIEVEELLPDFRKINNAGKHLLELINSILDLSKIEAGRMELYLESFSLPELI 561

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
           +   S+++    + +  +      +I  + AD+  ++Q  LN+LSNA  FT  G  I + 
Sbjct: 562 NGVKSIIKPLIEKNQNQLLVDCPADIGLMTADVTKLRQTLLNLLSNASKFTHQG-TIQLQ 620

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                 ++V+ +V D+G+GM+  ++++  + F Q  +S   +  GTGLGL +++  ++  
Sbjct: 621 VAAQ-GDQVVFKVVDSGIGMSPEQIDRIFEAFAQADDSTTRKFGGTGLGLSISRHFIEMM 679

Query: 789 MGKFYIFSTPAKGTLIEIIFP 809
            GK  + S   +G+   I  P
Sbjct: 680 GGKITVESVLGEGSTFTITLP 700


>gi|325262268|ref|ZP_08129006.1| PAS domain protein [Clostridium sp. D5]
 gi|324033722|gb|EGB94999.1| PAS domain protein [Clostridium sp. D5]
          Length = 1001

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 130/775 (16%), Positives = 249/775 (32%), Gaps = 83/775 (10%)

Query: 95  LKEISEELPKTIGNYAFK---MIGMRLCDVSDILHIDPNNHI-GDLLKRQN-TWYGKTTL 149
              +S E     G    +   + G      +    +        +  K    T+  K  +
Sbjct: 93  FAFVSREAAALFGYTVEEFLEVTGGTAVGAAYPPDLHQALADCAEAFKDGGLTYSTKYRV 152

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
              +G+     I  +       +     +    +        +     +   +  + +++
Sbjct: 153 RCKDGSLK--WIIDSGKKAQDIDGN---WMVNSLYLDITRSEEDAQRHREQTELLTSIYD 207

Query: 210 IKK----GHSSVEKEKYDIFSQQSPPPHLRMKNKVS--------SLTEYYAHKDDVLKTE 257
                           Y + S       L   + +          +       D      
Sbjct: 208 TVPCGIIRFIKSSNGSYRLISLNRAVVSLMGYDSIEEGMGDWKEGMLGAVVEADRQYLYN 267

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKK----QYFGTLQNNSKESFEYLSHRNHPSLSA 313
            Y  L +       +      + + +  +        T +         +       L  
Sbjct: 268 TYYQLENIGDRQDSEFRVMWKDGSIHWMEGTSMVVGTTPEGEKILQRTVVDITPRKVLQQ 327

Query: 314 YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
             D  + +    ++      F Y      +   S+  +T    +   EI      LL   
Sbjct: 328 QLDREQEMYRVAMEASAAVMFEYHMDTDTFI--SYEPITGEGVL-RNEIKDYSQALLKQQ 384

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
            +  ++    +     +        R  T +    N +           +  +     G 
Sbjct: 385 LVHPDDIPGVIDN-ICNGRTEVFEVRCSTPRTGPGNFIWYRVNGRLVM-EEGKPSRVVGA 442

Query: 434 EPEDVDTRINKRKMEIEVMQL---CSILEATS---DGIAIINRE---------------G 472
                     K ++      L    S L+A +     I  ++ E               G
Sbjct: 443 LYNI---HKMKSELSENSEHLYMNQSALQAINGVYVSIFYVDLEADSYYAVRLPEAGSSG 499

Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
            +  +    S+L  Y + D+       + + +        L E+ + +    +E      
Sbjct: 500 SLARSGPYSSQLCSYILRDV---NLADWKKVSEVCKKEELLRELNADNRH--IEVEFRQR 554

Query: 533 TKEEKLLSLRIIIKKLPFSSCYSLT--MHDISEWK-----------QEKNKLSHAKKIAE 579
             E   L + + +++       +      +IS  K           + K+ L  A     
Sbjct: 555 QSE-LWLRMEVHLREANEGRPDTAIIAFRNISVEKQKELEYYEEEKRAKHALEEAYASLN 613

Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639
             +S KSDFL+++SH+IRTP+ AI+G +  I     G     +  +  + ID SG  +L+
Sbjct: 614 TANSAKSDFLSKMSHDIRTPMNAIMGMAA-IAKNNLG--NEEKIEDCLDKIDISGGHLLE 670

Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRIL 698
           ++N +LD+SKIESG + L  E   +++ + E   ++Q  A++KR+  RT         + 
Sbjct: 671 LINKVLDMSKIESGNITLSEEKFRIEDVLEEVSLIIQPDADKKRLNYRTIVKKPEHSWVH 730

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-----VILRVRDTGVGMTNYEL 753
            D   VKQI LN+LSNA+ +T   G I +        E       + V D G+GMT    
Sbjct: 731 GDAVRVKQILLNLLSNAVKYTNESGYINVYLEEKLTGENGVGCYEIIVEDDGIGMTEEFC 790

Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            K   PF +  +S+    +GTGLGL +   +V    G   + S   KGT   +  
Sbjct: 791 SKMFLPFERAEDSRVSEIQGTGLGLAITSNLVQMMNGTIQVESELNKGTRFIVTI 845



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 41/444 (9%), Positives = 119/444 (26%), Gaps = 36/444 (8%)

Query: 169 YSRNREF----SGFRGFGIV--HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKY 222
           +    E     +G + +  V   +  ++ + +   ++++   S +    K  +  +   +
Sbjct: 34  HDMEGELFQDKTGRQSYDYVQERLKALEEEKKQQNRQMEVIMSSIAGGLKISNDDDTYSF 93

Query: 223 DIFSQQSPPPHLRMKNKVSSLT------EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFH 276
              S+++         +   +T        Y         +          +   +    
Sbjct: 94  AFVSREAAALFGYTVEEFLEVTGGTAVGAAYPPDLHQALADCAEAFKDGGLTYSTKYRVR 153

Query: 277 TINLNQYTKKQYFGTLQNNSKESFE---YLSHRNHPSLSAYFDEGENLTPETVDKCPIPF 333
             + +           Q+          YL        +    E   L     D  P   
Sbjct: 154 CKDGSLKWIIDSGKKAQDIDGNWMVNSLYLDITRSEEDAQRHREQTELLTSIYDTVPCGI 213

Query: 334 FVY---SHG--NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388
             +   S+G   L   N + + L  Y S+++         L     + + +       Y 
Sbjct: 214 IRFIKSSNGSYRLISLNRAVVSLMGYDSIEEGMGDWKEGML---GAVVEADRQYLYNTYY 270

Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
                         + W   +   M                      +    ++ +++++
Sbjct: 271 QLENIGDRQDSEFRVMWKDGSIHWMEGTSMVVGTTPEGEKILQRTVVDITPRKVLQQQLD 330

Query: 449 IEVMQLCSILEATSDGIA--IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
            E       +EA++  +    ++ +  I     +   + G  V     K ++  L +   
Sbjct: 331 REQEMYRVAMEASAAVMFEYHMDTDTFI-----SYEPITGEGVLRNEIKDYSQALLKQQL 385

Query: 507 SVMNHY---LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHD 560
              +     +  I +        + +   T     +  R+  + +            +++
Sbjct: 386 VHPDDIPGVIDNICNGRTEVFEVRCSTPRTGPGNFIWYRVNGRLVMEEGKPSRVVGALYN 445

Query: 561 ISEWKQEKNKLSHAKKIAEKESSH 584
           I + K E ++ S    + +     
Sbjct: 446 IHKMKSELSENSEHLYMNQSALQA 469


>gi|166033331|ref|ZP_02236160.1| hypothetical protein DORFOR_03057 [Dorea formicigenerans ATCC
           27755]
 gi|166027688|gb|EDR46445.1| hypothetical protein DORFOR_03057 [Dorea formicigenerans ATCC
           27755]
          Length = 1077

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 94/488 (19%), Positives = 189/488 (38%), Gaps = 34/488 (6%)

Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
           D++      S +++  K + ++      +    +      A    I  N E         
Sbjct: 326 DELIQHFVDSYVVETDKKAVSSFYDRGYIAERLKGLETELALECRITLNGEERW---VRN 382

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRK---MEIEVMQLCSILEATS---DGIAIIN-R 470
                +  ++        +  +T++   +   M  +   +  ++++     D   + +  
Sbjct: 383 VIIRGEIEDSEYAMIFLRDITETKVESARHLQMAADNASMELLIQSIVRLVDRFVVCDLE 442

Query: 471 EGIILSTNRAVSKL---FGYPVEDILRKPFTVFLEQNTPSVMNHYLT--EILSLDLRQTL 525
                  N     +    G+   D   +    +        ++  +    I      +  
Sbjct: 443 NDRYEFYNLNGQMIYKPLGF-YHDFQMQVLEKYKTLEPLEAIDILIAPDNIRKKLKSEND 501

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM---HDISEWKQEKNKLSHAKKIAEK-- 580
                  +++EK   +   I            +    D+++ K+ + +   A K A +  
Sbjct: 502 IYKFEYCSQDEKTYKIASYIPLEWEDGKLVKVLLASMDVTQEKKAEIESRQALKEAYRSA 561

Query: 581 --ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
              +  K++FL+ +SH+IRTP+ AI+G + +            R IE    I  S   +L
Sbjct: 562 ENANRAKTEFLSNMSHDIRTPMNAIVGLTAIAGANI---ESQERVIECLGKITESSRHLL 618

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN-NIPRI 697
            ++N++LD+++IESGKM L  E  +L E V   I+L +   +E +        +     +
Sbjct: 619 GLINEVLDMARIESGKMTLAQEDFNLSELVDNLITLTKPVLDEHKHNFDIHINHIEHEAV 678

Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-----VILRVRDTGVGMTNYE 752
             D   ++Q+ +N++SNAI +TP GG II S     N           + D G+GM+   
Sbjct: 679 CGDSLRIQQVFVNLMSNAIKYTPDGGNIIFSIEEKPNGFSELGCYEFTIEDNGIGMSPEF 738

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT--LIEIIFPL 810
            +    PF +  + +  R +GTGLG+ +++ +V+   G   + ST  KGT   + I   L
Sbjct: 739 QKIMFDPFSRADDQRTTRVQGTGLGMAISRNIVNLMNGTIKVDSTLHKGTKITVTIYLEL 798

Query: 811 YDTSHPHD 818
            +     D
Sbjct: 799 QEKEKEQD 806


>gi|83643743|ref|YP_432178.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83631786|gb|ABC27753.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 834

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 95/342 (27%), Positives = 157/342 (45%), Gaps = 35/342 (10%)

Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
            I   +R   +L G    ++    F+        + +   L  +  L +           
Sbjct: 134 QIELYSRVTDELLGVARFEVSHLFFSKLKRNMQHAFLMDALLTLCLLLIA---------- 183

Query: 533 TKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
                 + + I+I+KL            I   KQ + +L  AK+ AE  S  KS F+A V
Sbjct: 184 -----WVVINILIRKLRAE---------IDARKQTEKELILAKEQAETASEAKSFFVANV 229

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHEIRTP+ AI+G   +++        + R  ++ N I+ +   +L ++ND+LD SKIE+
Sbjct: 230 SHEIRTPMNAILGMCYLMQRTDL----DARQTDFLNRINVAAKSLLALINDILDFSKIEA 285

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNI 711
           GK+ +   P SLD  + +   +    A EK++ +  S + ++P+ +  D   + QI LN+
Sbjct: 286 GKLKIENRPFSLDGVLQQLAQMEAAKAAEKQLELIFSVSQDVPQRLKGDPDRLGQILLNL 345

Query: 712 LSNAIHFTPSGG-QIIISTTHTSNEE-----VILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           ++NAI FT  G   + +        +     +   +RDTGVG+    L +    F Q+ +
Sbjct: 346 VNNAIKFTERGKIVVTVRLYKKEAGDEGPVMLRFSIRDTGVGIAPKNLSRLFAAFSQVDS 405

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
               R EGTGLGL + K +V    GK +  STP KG+     
Sbjct: 406 RLSRRYEGTGLGLAICKQLVQLMGGKIWAKSTPGKGSTFVFT 447


>gi|284929382|ref|YP_003421904.1| multi-sensor signal transduction histidine kinase [cyanobacterium
           UCYN-A]
 gi|284809826|gb|ADB95523.1| multi-sensor signal transduction histidine kinase [cyanobacterium
           UCYN-A]
          Length = 652

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 82/421 (19%), Positives = 170/421 (40%), Gaps = 39/421 (9%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINK--RKMEIEVMQLCSILEATSDGIAIINREGIIL 475
                +  E +       + +++       ++  E  +L +++  T DG  +++    +L
Sbjct: 229 LPFGGELGELIFNFNEMAKRLESHEEHNIEELTAEKAKLDTLVSTTIDGAILLDINLNLL 288

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD----------LRQTL 525
             N    ++F +   +++ +     L +   + +   L E++                  
Sbjct: 289 LVNPTARRMFNWNKINLIGENVLKLLPKELTNQLQLPLQEMMRKRHHANNTYVEPRISPE 348

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
           E          K++ + +             ++T+ DI+                   + 
Sbjct: 349 EYRIKLQQPILKIVRILLTPVFDQHRDLKGIAMTIQDITREVGL--------------NE 394

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
            KS F++ VSHE+RTPL  I  F E +  +    L +    E+    +   + +  +VND
Sbjct: 395 AKSQFISNVSHELRTPLFNIKSFIETLA-EFGQDLTDAERKEFLETANHETDRLTRLVND 453

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703
           +LD+S++ES K   +   V L + + + I   +L A +K + +     +++P +L     
Sbjct: 454 VLDLSRLESFK-TYYLSAVDLSQLIEQTIRTYRLNAKDKELTLYKEVKSDLPLVLGHYDL 512

Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTH--------TSNEEVILRVRDTGVGMTNYELEK 755
           + Q+  N++ NA+ FTPSGG I++   +         +   V + V DTG+G+   +   
Sbjct: 513 LLQVINNLVGNALKFTPSGGTIVVRAYYFKVKSKQSNNKSFVRIEVSDTGIGIAPEDQTA 572

Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
               F ++ N +    EGTGLGL +   +++ +  +  + S    GT       LY  + 
Sbjct: 573 IFDRFFRVEN-RVHTLEGTGLGLSIVTNIINKHHSQTNLISEIGVGTTFWFDLALYQDNC 631

Query: 816 P 816
           P
Sbjct: 632 P 632


>gi|255011436|ref|ZP_05283562.1| two-component sensor histidine kinase [Bacteroides fragilis 3_1_12]
          Length = 522

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 107/535 (20%), Positives = 211/535 (39%), Gaps = 39/535 (7%)

Query: 290 GTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI--PFFVYSHGNLFYANPS 347
             L+   K   +     +           E  +   +D  P     F ++   +  A+  
Sbjct: 11  ELLEIVEKLEKKVEGLSSELDSLKKGRFRERYSTRILDALPDMLTVFDHNANIVELASSP 70

Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
                +  + + I  +         P+ +  +  + +           A    H++  + 
Sbjct: 71  TTNHVEGTTAESIINSNVRD---IVPEEAYESVRQNMDKVIRTGKSSIAE---HSLTLDG 124

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS----ILEATSD 463
              +   +            +       ++ +          E+++L S    IL     
Sbjct: 125 ---VLHHYENRIFPLDDQYLLCMCRDVSQETEMARTNEAQRSEIVRLNSLMNDILNNIPV 181

Query: 464 GIAIINR--EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN-TPSVMNHYLTEILSLD 520
            + + +   +   L  N+A ++  G  VE  +                +     + + L 
Sbjct: 182 YLFVKDTGNDFRYLYWNKAFAEYSGISVERAVGSTDAEIFPDKKDAERLRQDDLKAMELG 241

Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY---SLTMHDISEWKQEKNKLSHAKKI 577
             + LE     +T   +  ++  +   +P    Y        D++E K+ + +L  A+  
Sbjct: 242 RIEYLE---TYTTMSGEARTVTTMKTVVPSGGRYPYIIGVSWDVTETKKTEKELIAARIK 298

Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
           AE+    KS FLA +SHEIRTPL AI+GFS++I              +YA+ ++ + +++
Sbjct: 299 AEEADRMKSSFLANMSHEIRTPLNAIVGFSKLIIE----ADDEYEKRQYADIVEHNSSVL 354

Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR- 696
           L++ ND+LD+S +E+G + L + PV L +     + L +LY    +  +R       P+ 
Sbjct: 355 LNLFNDILDLSALEAGSLELSYHPVKLKDI---CLQLHELYVKSVKPEVRLMLDEVDPQL 411

Query: 697 -ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755
            I  D   + QI +N+++NAI FT +G +I         + V   V DTG G+    +  
Sbjct: 412 CIQGDWERISQILVNLITNAIKFTSAG-EIHFGFQ-EKADMVQFYVSDTGKGIPAERVAT 469

Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             + FG+I +      +GTGLGL + + +V+   G+ ++ S   KGT+     P+
Sbjct: 470 IFQRFGKIDDF----VQGTGLGLTICRMLVEKMGGRIWVRSKQGKGTVFYFTLPV 520



 Score = 41.2 bits (95), Expect = 0.71,   Method: Composition-based stats.
 Identities = 26/283 (9%), Positives = 66/283 (23%), Gaps = 26/283 (9%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG---DLLKRQN 141
           F  +          ++   +  G    + +G    ++      D           ++   
Sbjct: 184 FVKDTGNDFRYLYWNKAFAEYSGISVERAVGSTDAEI-FPDKKDAERLRQDDLKAMELGR 242

Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
             Y +T    + G    V      +P   R     G     +                  
Sbjct: 243 IEYLETYT-TMSGEARTVTTMKTVVPSGGRYPYIIG-----VSWDVTETKKTEKELIAAR 296

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
            K      +K    +           ++P   +   +K+    +    K       +   
Sbjct: 297 IKAEEADRMKSSFLANMSH-----EIRTPLNAIVGFSKLIIEADDEYEKRQYADIVE-HN 350

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG--- 318
            +   +   +  D   +         +   L++   +  E       P +    DE    
Sbjct: 351 SSVLLNLFNDILDLSALEAGSLELSYHPVKLKDICLQLHELYVKSVKPEVRLMLDEVDPQ 410

Query: 319 -------ENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKY 354
                  E ++   V+         S G + +       + ++
Sbjct: 411 LCIQGDWERISQILVNLITNAIKFTSAGEIHFGFQEKADMVQF 453


>gi|153208507|ref|ZP_01946791.1| putative sensor protein gacS [Coxiella burnetii 'MSU Goat Q177']
 gi|120575963|gb|EAX32587.1| putative sensor protein gacS [Coxiella burnetii 'MSU Goat Q177']
          Length = 808

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 91/511 (17%), Positives = 194/511 (37%), Gaps = 40/511 (7%)

Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
            F+   G +  AN   + L + K               D    +   A K  +    ++ 
Sbjct: 25  LFISDEGFIEAANDFAIKLLQLKP----------DQFPDVDFHAFCRANKYSLSRFFNKV 74

Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
                A   T        + +       +           +  +    ++   +++ ++ 
Sbjct: 75  EPPTEALEETYLLKGRQYVILW-KIIRFSQFDDMLKGSLLVGHDRTQLKLVSGELKTKIF 133

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL--RKPFTVFLEQNTPSVMN 510
              +IL      +   ++  + L  N  ++++ G P    +     F    E+       
Sbjct: 134 FYENILSKLPTNVYWKDKNSVYLGCNERLARVMGLPSRKAIEGMTDFDFVWEKEAAKSFI 193

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQ 566
            +  +++   +    E +         ++++      L               DI+E K+
Sbjct: 194 EFDQKVMRSGIPLMTEDVFE--EASGNIVTVLTNKTPLKNEHGETMGVLAISVDITELKK 251

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN--QRFGPLGNPRYI 624
            + +L   ++ AE  +  KS+F+A +SH+IRTP+  ++G  + + N  +      N   +
Sbjct: 252 TQAQLEIQRQKAEAANKAKSEFIANMSHDIRTPIAGMLGMLQDLLNVPEETKTSSNASIL 311

Query: 625 EYANYIDR-------SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
                + R       + + +L + N++L++ ++ESGK +   E   L E +   I L+Q 
Sbjct: 312 NVIETVQRDSELLMGATDELLQLCNEILEVVRLESGKESEQSEAFDLRELIKRTIELLQP 371

Query: 678 YANEKRILIRTSFANNIPRILADLRS--VKQIALNILSNAIHFTPSG-GQIIIST----- 729
            A++K++ +       +P+   D     + +  LN++SNA+ FT +G  ++ +       
Sbjct: 372 VAHQKKLTLACEVDEGVPQ-YLDGIRMYLSRTLLNLISNALKFTENGFVKVKVRLSDKTN 430

Query: 730 ---THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
                     + + V DTG+G+   + +   + F ++  S +   +G GLGL   K  VD
Sbjct: 431 SHYRVGDKATIQIAVEDTGMGIPRDKFDTIFEHFSRLTPSYEGLYKGAGLGLYTVKRYVD 490

Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
           A  G+  + S   KGT   +I P     H  
Sbjct: 491 AMGGEITVDSEVGKGTCFNVIIPFTVADHAE 521


>gi|90422066|ref|YP_530436.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisB18]
 gi|90104080|gb|ABD86117.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisB18]
          Length = 1050

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 87/688 (12%), Positives = 198/688 (28%), Gaps = 68/688 (9%)

Query: 170 SRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFS--- 226
              +EF    GF +    R+ +D       L +  +    ++          +       
Sbjct: 242 DPAKEF----GFDLGRRFRIGDDFPEFASALQQTDARPRVMQDRDGQRFGVGWQWVRLAG 297

Query: 227 -------QQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTIN 279
                  +  P   L       S +        VL      +  +   + P  +    + 
Sbjct: 298 GPRVAVIEAFPYGTLMSVQTAVSNSTLIGGAAAVLCAILMAVGVARSLTKPLVQITKAVE 357

Query: 280 LNQYTKKQYFGTLQN-----NSKESFEYLSHRNHPSLSAYFDEGENL-----TPETVDKC 329
                +               +       +     +     +  E          T++  
Sbjct: 358 GFSRGEMIAISATGGNEIDVLAGAFIRMTAESQRKTAELNEEIAERSRIAEVLNNTLNNM 417

Query: 330 PIPFFVY-SHGNLFYANPSFLLLTK-YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
             P  +  + G++   N +   L      V ++                    + P++  
Sbjct: 418 VDPVLIAGADGHVILTNFAARKLFGNPTGVGNMNAVRTFERFYSDGVTPLPPQMSPLVRA 477

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
                          +    ++ L     P    ++         +  +   T+  + ++
Sbjct: 478 FRGEIVENFEFVARPLASAHKSYLVANGRPI--RSEAGILQGAVMVYHDVTQTKKAQDEL 535

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
                   +I++   D    I+  G I   +     LFG+   + L +   V +     +
Sbjct: 536 RESERMARAIIDTALDAFVQIDPSGAITEWSPHAETLFGWSRNEALGENIGVLIFSPDQT 595

Query: 508 V-----MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS--LTMHD 560
                    ++  +        +E        +   + + + +  L  +  +     M D
Sbjct: 596 SETKTNYRKFIDSVDHGGTGYRIETEATRR--DGTTIQIEVALTALVRNGGHVTNAFMRD 653

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           ++E    + +L  A+K+              ++H+    LT I G  +++          
Sbjct: 654 LTEKTIAEQQLRQAQKM-----ESIGQLTGGIAHDFNNMLTVITGTIDIL---GAAVADR 705

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
           P        I  + +   ++   LL  ++    K  L       +  +S+  +L++    
Sbjct: 706 PECATITKLISDAADRGAELTRHLLAFAR----KQPLQPCETDPNTLLSDLQNLLRPTL- 760

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH--------- 731
            ++I I     + +  I  D   +    +N+  NA    P GG + + TT+         
Sbjct: 761 GEQIEICEVLQDGVWPIFVDRGQLDAALVNLAVNARDAMPDGGTLTLETTNVVLDEDYVR 820

Query: 732 -----TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
                     V++ + D+G G+      +   PF          G+GTGLGL +    + 
Sbjct: 821 RYAEGEPGPYVMITISDSGCGIPEAIRGRVFDPFFTTK----EVGKGTGLGLSMVYGFIK 876

Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
            + G   ++S    GT   I  P   T 
Sbjct: 877 QSGGHITLYSEVGHGTTFRIYLPRAKTE 904



 Score = 38.5 bits (88), Expect = 4.4,   Method: Composition-based stats.
 Identities = 31/254 (12%), Positives = 49/254 (19%), Gaps = 15/254 (5%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH------IGDLLKRQN 141
            ID  G + E S       G    + +G  +  +                 I  +     
Sbjct: 555 QIDPSGAITEWSPHAETLFGWSRNEALGENIGVLIFSPDQTSETKTNYRKFIDSVDHGGT 614

Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
            +  +T     +GT + + + L AL          G      +             ++  
Sbjct: 615 GYRIETEATRRDGTTIQIEVALTALVRNG------GHVTNAFMRDLTEKTIAEQQLRQAQ 668

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
           K  S                  I                 +              E    
Sbjct: 669 KMESIGQLTGGIAHDFNNMLTVITGTIDILGAAVADRPECATITKLISDAADRGAELTRH 728

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
           L +     P Q      N      +           E  E L     P           L
Sbjct: 729 LLAFARKQPLQPCETDPNTLLSDLQNLLRPTLGEQIEICEVLQDGVWPIFVDRGQLDAAL 788

Query: 322 TPETV---DKCPIP 332
               V   D  P  
Sbjct: 789 VNLAVNARDAMPDG 802


>gi|288939999|ref|YP_003442239.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
 gi|288895371|gb|ADC61207.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
          Length = 1023

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 118/512 (23%), Positives = 195/512 (38%), Gaps = 69/512 (13%)

Query: 355 KSVDDIEIAGGLSTLLDAPK-----------LSDNNAIKPVMLYRSDRTCIAASARLHTI 403
                +E  G    L   P+             D  A+    L  +       S +    
Sbjct: 16  PDGTILEFRGPTDRLYVPPEQFIGKHPGEVLPPDVAALFDRYLAAAVERSELVSFQYVLP 75

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV-DTRINKRKMEIEVMQLCSILEATS 462
             +          P         N    G+  +     R+ +R++ IE     ++   T+
Sbjct: 76  LPDGPREFEARICPL------NTNAQFLGVVRDLTNARRLAERELLIE-----TMFAQTT 124

Query: 463 DGIAIINRE-GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
           D IA+++ E G  L+ + AV +  GY  E+      T                 I ++  
Sbjct: 125 DSIALVDPETGRFLAFSDAVYRDLGYTREEFACLSITDI---QAEQASEEIAANIAAILN 181

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL--TMHDISEWKQEKNKLSHAKKIAE 579
                  T    KE ++  + I  +++       +     D++E K+++ +     +  E
Sbjct: 182 ADIGGFATRHRDKEGRIHDVEINFRRVIHDGRTLISSVWRDVTELKRQERERLETARELE 241

Query: 580 K-------------------------ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                                      +  KS FL+ +SHEIRTP+ AIIG+S +I+ + 
Sbjct: 242 AYRGHLEELVATRTAELEAAKVAAEGANRAKSAFLSNMSHEIRTPMNAIIGYSHLIRQEP 301

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
             P    R  E  N ++ S   +L I+ND+LD+SKIE+ K+ L          +    +L
Sbjct: 302 LTP----RQTEQLNRLNDSAQHLLQIINDILDLSKIEAEKLTLEARDFEPARVLDHVFNL 357

Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST----- 729
           V      K + +     +   R+  D   + QI LN++SNA+ FT  G QI I+      
Sbjct: 358 VADQIQAKELNVLVDLDHVPLRLHGDGVRLGQILLNLISNAVKFTERG-QIAIAVYPMSV 416

Query: 730 ---THTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
                   E + LR  VRDTG+GMT  +L +  + F Q   S   R  GTGLGL ++K +
Sbjct: 417 PLAGAADPETLWLRWTVRDTGIGMTAEQLARLFRAFEQADGSTTRRYGGTGLGLAISKRL 476

Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
            +   G+    S P  G+   +  P      P
Sbjct: 477 TELMGGRIGASSQPGTGSEFWLEIPFEPAREP 508



 Score = 42.3 bits (98), Expect = 0.36,   Method: Composition-based stats.
 Identities = 15/113 (13%), Positives = 39/113 (34%), Gaps = 5/113 (4%)

Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL 519
           +  D   +   +G IL       +L+  P E  + K     L  +  ++ + YL   +  
Sbjct: 6   SIPDLFFLFAPDGTILEFRGPTDRLY-VPPEQFIGKHPGEVLPPDVAALFDRYLAAAVER 64

Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS-EWKQEKNKL 571
               + + +        +       I  L  ++ +   + D++   +  + +L
Sbjct: 65  SELVSFQYVLPLPDGPREF---EARICPLNTNAQFLGVVRDLTNARRLAEREL 114



 Score = 38.9 bits (89), Expect = 3.6,   Method: Composition-based stats.
 Identities = 22/228 (9%), Positives = 56/228 (24%), Gaps = 8/228 (3%)

Query: 89  IDAH-GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
           +D   G     S+ + + +G    +   + + D+      +        +   +     T
Sbjct: 130 VDPETGRFLAFSDAVYRDLGYTREEFACLSITDIQAEQASEEIAANIAAILNADIGGFAT 189

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                EG      +++    +    R         +                  ++    
Sbjct: 190 RHRDKEGRI--HDVEINFRRVIHDGRTLI----SSVWRDVTELKRQERERLETARELEAY 243

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
               +   +    + +           R K+   S   +              L+  E  
Sbjct: 244 RGHLEELVATRTAELEAAKVA-AEGANRAKSAFLSNMSHEIRTPMNAIIGYSHLIRQEPL 302

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
           +  + E  + +N +     Q    + + SK   E L+        A  
Sbjct: 303 TPRQTEQLNRLNDSAQHLLQIINDILDLSKIEAEKLTLEARDFEPARV 350


>gi|167615791|ref|ZP_02384426.1| sensory box histidine kinase [Burkholderia thailandensis Bt4]
          Length = 709

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 97/633 (15%), Positives = 207/633 (32%), Gaps = 28/633 (4%)

Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE 245
             R + D  A   + D          +      +++                  + S   
Sbjct: 86  EIRKEFDALAPLVQDDPVQQRRLAALRTLLKRNQDELAATIALRKSEGFDAAQAIVSSDA 145

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
                D           T ++     ++                G L      SF Y+  
Sbjct: 146 GKIFMDRARTMVNDMEATVQQQLRALRDRARATRDVAIAVGLASGLLTLVVCVSFGYVMR 205

Query: 306 RNHPSLSAYFD---EGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIE 361
           R     SA  D       L   T+             G + + N     +T   +   + 
Sbjct: 206 RLLLVESAASDDLFAQRELLHVTLASIGDGVIATDVDGRITFFNRVAEEMTALAADAVVG 265

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                  L     L+      P  +    +   A       +       L +        
Sbjct: 266 QPIEQ-VLTFRHALTQRVIDNPARVAVERKRIAALPVHTRFV-GRGGGELPVDGNAAPTF 323

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
           +   + +    +  +  +    + +  +        +EA  + + ++NREG I+  N   
Sbjct: 324 DANGKLVGAVLVVRDVSERERAEERFRLA-------VEAAPNAMIMVNREGKIVLVNSQA 376

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLL 539
            K F Y   D++ +   + + +   +    +          + +   +   G  ++    
Sbjct: 377 EKFFDYVRGDMIGQGIDMLVPERFRAGHATHRGAFFGKPDARPMGAGRDLFGLRRDGSEF 436

Query: 540 SLRIIIKKLPFSSCYSLT--MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
            + I +  +  S    +   + DI+  K+ +++L    +   + +     F    SH+++
Sbjct: 437 PVEIGLNPITTSEGAFVLCSITDITARKRAEHELRRRSEELARSNQDLEQFAYVASHDLQ 496

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
            PL A+ G  ++++ +  G L + R  E+  +       +  +++DLL  S++  G++  
Sbjct: 497 EPLRAVAGPLQLLQRRYQGQL-DARADEFIGHAVDGATRMQSLIDDLLSYSRV--GRLED 553

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
             +PV  +  + EA+  +     E    I       +P +      +  +  N++ NAI 
Sbjct: 554 ARQPVDCERVLDEALRNLSAAIRESGAQITHD---RLPIVHGIAAQLVLLFQNLIGNAIK 610

Query: 718 FTPSG--GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           F       +I +      +  V  RVRD G+G+     E+    F ++    +    GTG
Sbjct: 611 FRSKERIARIHLEADTRDDAWV-FRVRDNGIGIDPQYFERIFLIFQRLH--TRREYPGTG 667

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           LGL L K +V+ + G+  + S P +GT      
Sbjct: 668 LGLALCKRIVEHHGGRIAVESEPGRGTTFSFAL 700



 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/366 (9%), Positives = 80/366 (21%), Gaps = 24/366 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV------SDILHIDPNNHIGDLLKRQNT 142
            D  G +   +    +     A  ++G  +  V           ID    +    KR   
Sbjct: 239 TDVDGRITFFNRVAEEMTALAADAVVGQPIEQVLTFRHALTQRVIDNPARVAVERKRIAA 298

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
               T      G    +P+D  A P +  N +  G     +V             +   +
Sbjct: 299 LPVHTRFVGRGGG--ELPVDGNAAPTFDANGKLVGA--VLVVRDVSERERAEERFRLAVE 354

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
              +   +      +                  +   +  L               +   
Sbjct: 355 AAPNAMIMVNREGKIVLVNSQAEKFFDYVRGDMIGQGIDMLVPERFRAGHATHRGAFFGK 414

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
                    ++ F           +        S+ +F   S  +  +      E    +
Sbjct: 415 PDARPMGAGRDLFGLRRDGSEFPVEIGLNPITTSEGAFVLCSITDITARKRAEHELRRRS 474

Query: 323 PETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD-NNAI 381
            E                       F  +  +   + +    G   LL        +   
Sbjct: 475 EELARSNQDL-------------EQFAYVASHDLQEPLRAVAGPLQLLQRRYQGQLDARA 521

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
              + +  D      S     + ++R   L     P +      E +        +   +
Sbjct: 522 DEFIGHAVDGATRMQSLIDDLLSYSRVGRLEDARQPVDCERVLDEALRNLSAAIRESGAQ 581

Query: 442 INKRKM 447
           I   ++
Sbjct: 582 ITHDRL 587


>gi|189423633|ref|YP_001950810.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi
           SZ]
 gi|189419892|gb|ACD94290.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi
           SZ]
          Length = 743

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 80/278 (28%), Positives = 143/278 (51%), Gaps = 8/278 (2%)

Query: 536 EKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
           E  + L             S   H +S+ +Q  ++L+ A+  AE  +  KS+FLA +SHE
Sbjct: 317 ESDIPLEQAGNITELHGIISEVNHLMSQVRQSHHQLTAARDAAESANRTKSEFLANMSHE 376

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           +RTP+  +IG +++++        N    EY   I+ S + ++ ++ND+LD+S+IE+G++
Sbjct: 377 LRTPMNGVIGTAQLLRMTEL----NAEQAEYLASIEHSADSLMALLNDILDLSRIEAGRL 432

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSN 714
            L   P  L E +   +  +   A  K + +   F  N+P+ +L D    +QI LN+  N
Sbjct: 433 ELENRPFGLQEVIGNVVDSLSAQARLKWLQLSVEFDRNLPQLVLGDSLRFRQILLNLTGN 492

Query: 715 AIHFTPSGGQII---ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           AI FT  G  ++   +S+    +  + L V+DTG+G+T   +++   PF Q  +S   + 
Sbjct: 493 AIKFTDQGAVLVTAALSSADEDSVTLHLCVQDTGIGITAEAMQRIFAPFTQADSSNTRKY 552

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            G+GLGL +++ +     G+ +  S P  GT   +  P
Sbjct: 553 GGSGLGLTISRHLTGLMGGRLWAESEPGIGTTFHLELP 590


>gi|85702823|ref|ZP_01033927.1| sensory box histidine kinase/response regulator [Roseovarius sp.
           217]
 gi|85671751|gb|EAQ26608.1| sensory box histidine kinase/response regulator [Roseovarius sp.
           217]
          Length = 734

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 100/538 (18%), Positives = 191/538 (35%), Gaps = 26/538 (4%)

Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV-DKCPIPFFVYSHGNLFYANPS 347
              LQ  S    E + H        Y             +             +      
Sbjct: 41  LAALQTLSAPDPEQVDHVRRQFDVLYSRATALRNGRVYREVLAQDVSHADLDRIGDLLAR 100

Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
            + L    +    +    L +L             P+    +    +AA A+    +   
Sbjct: 101 MVPLVDTDAATVFQERDRLISL-------GLEMADPIRSIATRG--LAAHAKRSDSERAG 151

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
             +  ++            +     +       R    +      +L +IL  + D + +
Sbjct: 152 LTAKILSMAALSVMMLAALSSLLFLVWRLYRSYRRQAEQSTSTSNRLATILNTSQDAVLV 211

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE--ILSLDLRQTL 525
           +  +G I  TN     L     +       + FL           L    +    +   +
Sbjct: 212 VGPDGRIEDTNARAGDLLELSGDPATPVKLSEFLFYKQADGRLKPLDANVLRETCVDGPV 271

Query: 526 EKI-TLGSTKEEKLLSLRIIIKKLPFSSCYSLT--MHDISEWKQEKNKLSHAKKIAEKES 582
            +   +      +  +  +                + DISE    + +++ ++  A    
Sbjct: 272 RREDVIVRNFAGREFAAELSADLAKRGQTTICICFVRDISERIAAEAEIASSRDRALAGE 331

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
             K+ FLA +SHE+RTPL  I+G  E++ +    P       ++   +  SG L+L  + 
Sbjct: 332 RAKARFLAMISHEMRTPLNGILGALELLDDTGLTP----DQEKFTRIMRSSGQLLLTQIT 387

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN-NIPRILADL 701
           D LD+++  + ++ L      LD+ + E +   Q  A  +   +R    +  + R + D 
Sbjct: 388 DALDLTQAAARQIVLRPAAFDLDQLLEELVETQQGPAQARGNALRLRRPHSGLGRSIGDR 447

Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSN-----EEVILRVRDTGVGMTNYELEKA 756
             + Q+ LN++SNAI FT  G +I +  T         +EV  +V DTG+G++  +L K 
Sbjct: 448 ARIYQVLLNLVSNAIKFTKDG-EITLDVTRHDPSQSGLDEVEFQVTDTGIGISETDLPKV 506

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
              F ++ +    R EGTGLGL +A+ +V    G   + S   +G+L  +  PL   +
Sbjct: 507 FDDFMRVQDISGDRPEGTGLGLGIARQLVKLMKGNIGVESELGEGSLFWVRLPLPPAT 564


>gi|299149292|ref|ZP_07042352.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
 gi|298512726|gb|EFI36615.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
          Length = 992

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 84/391 (21%), Positives = 170/391 (43%), Gaps = 30/391 (7%)

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIIL-STNRAVSKLFGYPVEDIL 493
           +  +    ++K+     +L   L+  +      + R   IL   NR +        +D+ 
Sbjct: 468 DSTELHKAQQKLSATNNKLAMALDVANIVPWKWDLRSKTILCDINRPIE--LSTNDKDVN 525

Query: 494 RKPFTVF-------LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE--EKLLSLRI- 543
            +   V        + +     +     +++     +  E+  + + +    ++  +   
Sbjct: 526 EEQLAVPDSQYFSKIFKEDRKRVEKAYDDLIEGRSDKVREEYRVINVQNNIHRIEWVEAQ 585

Query: 544 IIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
              +    +        +   I+  K+ + +L+ A+  AE+ +  KS FLA +SHEIRTP
Sbjct: 586 AAVETRDENGKPLTLVGSSLVITTRKKMEMELTTARDRAEESNRLKSAFLANMSHEIRTP 645

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L AI+GFS ++ +            EY + I+ +  L+L +++D+LD+SKIE+G +   +
Sbjct: 646 LNAIVGFSGILASTD----EEEEKQEYVSIIENNNTLLLQLISDILDLSKIEAGTLEFQY 701

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719
             + L++ ++E  S +QL    +++ +    A     I  +   + Q+ +N++SNAI FT
Sbjct: 702 SNIDLNKMLNELTSSLQLKIKSEKVQLTCHLAEKNCFIHTEKNRLSQLLINLISNAIKFT 761

Query: 720 PSGGQIIISTTHTSNE-EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
             G    I   +     E+   V DTG G+   + +     F ++ +      +GTGLGL
Sbjct: 762 TEG---YIRFGYELRGKEIYFYVSDTGCGIPKDKQKSIFGRFVKLNSF----EQGTGLGL 814

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            + + +V+   G   + S   KG+      P
Sbjct: 815 SICQTLVEHMGGTIGVDSEEGKGSTFWFTLP 845


>gi|293368956|ref|ZP_06615557.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
 gi|292635976|gb|EFF54467.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
          Length = 1014

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 84/391 (21%), Positives = 170/391 (43%), Gaps = 30/391 (7%)

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIIL-STNRAVSKLFGYPVEDIL 493
           +  +    ++K+     +L   L+  +      + R   IL   NR +        +D+ 
Sbjct: 490 DSTELHKAQQKLSATNNKLAMALDVANIVPWKWDLRSKTILCDINRPIE--LSTNDKDVN 547

Query: 494 RKPFTVF-------LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE--EKLLSLRI- 543
            +   V        + +     +     +++     +  E+  + + +    ++  +   
Sbjct: 548 EEQLAVPDSQYFSKIFKEDRKRVEKAYDDLIEGRSDKVREEYRVINVQNNIHRIEWVEAQ 607

Query: 544 IIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
              +    +        +   I+  K+ + +L+ A+  AE+ +  KS FLA +SHEIRTP
Sbjct: 608 AAVETRDENGKPLTLVGSSLVITTRKKMEMELTTARDRAEESNRLKSAFLANMSHEIRTP 667

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L AI+GFS ++ +            EY + I+ +  L+L +++D+LD+SKIE+G +   +
Sbjct: 668 LNAIVGFSGILASTD----EEEEKQEYVSIIENNNTLLLQLISDILDLSKIEAGTLEFQY 723

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719
             + L++ ++E  S +QL    +++ +    A     I  +   + Q+ +N++SNAI FT
Sbjct: 724 SNIDLNKMLNELTSSLQLKIKSEKVQLTCHLAEKNCFIHTEKNRLSQLLINLISNAIKFT 783

Query: 720 PSGGQIIISTTHTSNE-EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
             G    I   +     E+   V DTG G+   + +     F ++ +      +GTGLGL
Sbjct: 784 TEG---YIRFGYELRGKEIYFYVSDTGCGIPKDKQKSIFGRFVKLNSF----EQGTGLGL 836

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            + + +V+   G   + S   KG+      P
Sbjct: 837 SICQTLVEHMGGTIGVDSEEGKGSTFWFTLP 867


>gi|292491506|ref|YP_003526945.1| diguanylate cyclase [Nitrosococcus halophilus Nc4]
 gi|291580101|gb|ADE14558.1| diguanylate cyclase [Nitrosococcus halophilus Nc4]
          Length = 1499

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 71/258 (27%), Positives = 126/258 (48%), Gaps = 10/258 (3%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           ++  +  + +L  A+  A + +  K +F A VSHE+RTPL  ++G  E+++N    P   
Sbjct: 249 MTVLEAREQELKRARDAALESARIKGEFAANVSHELRTPLNGVLGMLELLRNMGLTP--- 305

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
            +  EY      SG  +L+++ ++LD S+IESG+  L      L E + +AI L+   A 
Sbjct: 306 -KQREYVQVACNSGETLLELIGNILDFSRIESGRFKLDPADFYLQEILDDAIGLLAGQAQ 364

Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE--- 736
            K + +    A N+P  +  D   ++QI +N++ NA+ FT  G ++ +            
Sbjct: 365 RKDLDLGYVVAKNVPPSLRGDATRIRQILINLMGNAVKFTEQG-EVSVEVQLLEKTAKKL 423

Query: 737 -VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            ++  V+DTG+G+     +   + F Q  +S   +  GTGLGL + + +VD   G   + 
Sbjct: 424 VLLFEVKDTGIGIPIEFQKHIFEAFSQADSSTTRKYGGTGLGLAICRQLVDLMGGDIGVE 483

Query: 796 STPAKGTLIEIIFPLYDT 813
           S    G+      PL + 
Sbjct: 484 SKFGGGSRFWFTVPLEEA 501


>gi|160885842|ref|ZP_02066845.1| hypothetical protein BACOVA_03846 [Bacteroides ovatus ATCC 8483]
 gi|156108655|gb|EDO10400.1| hypothetical protein BACOVA_03846 [Bacteroides ovatus ATCC 8483]
          Length = 992

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 84/391 (21%), Positives = 170/391 (43%), Gaps = 30/391 (7%)

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIIL-STNRAVSKLFGYPVEDIL 493
           +  +    ++K+     +L   L+  +      + R   IL   NR +        +D+ 
Sbjct: 468 DSTELHKAQQKLSATNNKLAMALDVANIVPWKWDLRSKTILCDINRPIE--LSTNDKDVN 525

Query: 494 RKPFTVF-------LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE--EKLLSLRI- 543
            +   V        + +     +     +++     +  E+  + + +    ++  +   
Sbjct: 526 EEQLAVPDSQYFSKIFKEDRKRVEKAYDDLIEGRSDKVREEYRVINVQNNIHRIEWVEAQ 585

Query: 544 IIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
              +    +        +   I+  K+ + +L+ A+  AE+ +  KS FLA +SHEIRTP
Sbjct: 586 AAVETRDENGKPLTLVGSSLVITTRKKMEMELTTARDRAEESNRLKSAFLANMSHEIRTP 645

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L AI+GFS ++ +            EY + I+ +  L+L +++D+LD+SKIE+G +   +
Sbjct: 646 LNAIVGFSGILASTD----EEEEKQEYVSIIENNNTLLLQLISDILDLSKIEAGTLEFQY 701

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719
             + L++ ++E  S +QL    +++ +    A     I  +   + Q+ +N++SNAI FT
Sbjct: 702 SNIDLNKMLNELTSSLQLKIKSEKVQLTCHLAEKNCFIHTEKNRLSQLLINLISNAIKFT 761

Query: 720 PSGGQIIISTTHTSNE-EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
             G    I   +     E+   V DTG G+   + +     F ++ +      +GTGLGL
Sbjct: 762 TEG---YIRFGYELRGKEIYFYVSDTGCGIPKDKQKSIFGRFVKLNSF----EQGTGLGL 814

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            + + +V+   G   + S   KG+      P
Sbjct: 815 SICQTLVEHMGGTIGVDSEEGKGSTFWFTLP 845


>gi|197116409|ref|YP_002136836.1| HAMP/PAS domain-containing sensor histidine kinase [Geobacter
           bemidjiensis Bem]
 gi|197085769|gb|ACH37040.1| sensor histidine kinase, HAMP and PAS domain-containing protein
           [Geobacter bemidjiensis Bem]
          Length = 754

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 82/450 (18%), Positives = 186/450 (41%), Gaps = 28/450 (6%)

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
               +  L+       +   R +   +      H        + +   +      +    
Sbjct: 318 AYFASRHLTGPLRQLAMSARRIEEGDLDQRVVGHQRDEVGMLASSFNNMAESLKERDGII 377

Query: 428 MPQNGIEPEDVDT-----RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
             + G   E  +            + +E+ +L ++L + ++G+ + +R+ +++  N A  
Sbjct: 378 NKKTGDLQELNEQLEKMVEQRTSALSMEMGRLEAVLTSLAEGVVVTDRDNLVVLFNPAAQ 437

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
           +LF      ++ +      E      +   +++  +    +  +K         K L + 
Sbjct: 438 QLFELVPHRVVGQSVERLCEMTGFCNVLEQVSD-KAQREPRCGKKEVTVK---GKRLHVN 493

Query: 543 IIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
               +          +++ D+++ +Q                  K++F++ VSHE++TPL
Sbjct: 494 TATLQDEAGEFAGMVMSLRDVTKEEQV--------------DRMKTEFISTVSHELKTPL 539

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
           T+I G  +++  +        R         R+   ++ +++++LDIS IESG M  +F+
Sbjct: 540 TSIKGSLQLLLTRSKWLTDTERQ--LLTVCFRNTQRLIRLISEILDISGIESGGMIFNFK 597

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720
           P+ + E    A+  ++  A  + I I  +   ++P +  D   + Q+  N+LSNA+ F+P
Sbjct: 598 PLCIGELAVYAVEEIKSLAMGREITIVNTVGEHLPMVFGDSDRLIQVMTNLLSNAVKFSP 657

Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
            G  +++ T       V++ V D G  +   + +K  K F QI ++++ +  GTGLGL +
Sbjct: 658 EGKVVMV-TAEQEGNYVVVSVADRGRVIQWSDRDKLFKKFQQIESTERNKIGGTGLGLAI 716

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            K +V+ + G+ +  +    G       P+
Sbjct: 717 CKEIVERHHGRIFYTAAKEYGNTFSFTVPI 746


>gi|39996404|ref|NP_952355.1| sensor histidine kinase/response regulator [Geobacter
           sulfurreducens PCA]
 gi|39983284|gb|AAR34678.1| sensor histidine kinase/response regulator [Geobacter
           sulfurreducens PCA]
          Length = 835

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 83/255 (32%), Positives = 127/255 (49%), Gaps = 8/255 (3%)

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
            +L  A+K AE+ S  KSDFLA +SHEIRTP+ AIIG ++++ +               +
Sbjct: 312 AELILARKDAEEASRAKSDFLATMSHEIRTPMNAIIGINQLLVDTPL----TQEQRRLLD 367

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
               +   +L I+ND+LD+S++E+ ++ L  E V L   V     L  + A  K+I +  
Sbjct: 368 DSTTAAESLLIIINDILDLSRVEARRLELFPEAVELRSFVESLRRLFAVQATRKQISLSV 427

Query: 689 SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-EVILRVRDTGV 746
           S     PR +  D   ++QI  N+LSNA+ FTP+GG + +          ++  V DTG+
Sbjct: 428 SVGEGTPRFVWCDPARLRQILTNLLSNALKFTPTGGVVTMVADQAPAGAGLVFTVSDTGI 487

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+   + E   + F Q  +S      GTGLGL + K +V+   G   + S P  G    +
Sbjct: 488 GIDKAKQESIFEMFRQADSSTTRIYGGTGLGLAITKGLVELMGGTIAVESEPGSGATFSV 547

Query: 807 IFPLYDTSHP--HDC 819
             PL     P  HDC
Sbjct: 548 CLPLEPADGPQFHDC 562


>gi|220916365|ref|YP_002491669.1| PAS/PAC sensor signal transduction histidine kinase
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219954219|gb|ACL64603.1| PAS/PAC sensor signal transduction histidine kinase
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 840

 Score =  295 bits (756), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 107/703 (15%), Positives = 226/703 (32%), Gaps = 59/703 (8%)

Query: 128 DPNNHI-GDLLKRQNTWYGKTTLWP-IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVH 185
           D    + G LL   +       + P  EG      +D A        R  +      +  
Sbjct: 160 DGAGRLSGALLAAVDPERLAARVLPAREGEGSVGIVDRAG-------RLVARVPAIPLAW 212

Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE 245
            +R+    + L +           ++       +    +   +        + +   L  
Sbjct: 213 DDRLVAGAQDLVRAALAGAEATGPMRSEGGGPARLAAAVPVPELAWAVRATQPRADMLAP 272

Query: 246 YYAHKDD--------VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297
                           L            +S   +            +     T  +   
Sbjct: 273 MRRELAIGVLGAGLVALVALGASWAVGAHTSRALRRLERHAAALGRGEAPEPLTGPDEVV 332

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG--NLFYANPSFLLLTKYK 355
                 +         + D           + P+   +         +ANP++L      
Sbjct: 333 RLGAAYAQMAR-----HLDAVRRRFEAAFAEAPVGVLILDPAELRARWANPAYLAF---- 383

Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR-ENSLAMT 414
            +D      G+  L     L        V L R +      +      +++         
Sbjct: 384 -LDAPFRGEGVQGLRLEEFLPRAQEAGLVALLR-EVAAGDVAHEEQEYRYDGFARGPTWW 441

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII 474
                             +  E  +    + ++E +  +L ++L     G+ I +  G +
Sbjct: 442 RWSVRAVESGGGTRDLVLMVTEVTEQVRGREQVEADRRRLEAVLRVLPVGVLIADAGGQV 501

Query: 475 LSTNRAVSKLFG-----YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
           +  N A  +++G      P      +           +  +  L   L        E + 
Sbjct: 502 VQANDAARRIWGSRAPLRPGALYREQRARRADSGAPLAAGDWALQRALRSGEAVGGELVE 561

Query: 530 LGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHK 585
           +    +     +      +       +    T+ D++E ++                 ++
Sbjct: 562 IDR-FDGTQAVVLNGAAPIRDGEGRVVGAVTTLLDVTELRR--------------AVRNR 606

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
            + L  VSH++RTPL+A+   +  +     GP    +    A  +  +G  +  +++DLL
Sbjct: 607 DEVLQVVSHDLRTPLSAVTLGAAALTRLPDGPEAAAQARRAAARLAAAGRRMNRLIDDLL 666

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
           D+  +E G++++  EP    + + EA   ++  A  K + +  S A  +P +  D   V 
Sbjct: 667 DLETLEEGRLSMRPEPCDPADLLGEAADQLREAARAKGLDLCLSAAPGLPPVACDRDRVL 726

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           Q+  N+ SNA+  T  G  + ++    ++  VI RVRDTG G+ + +L      F +   
Sbjct: 727 QVLGNVASNAVKATEEGA-VCLAAEAQADGAVIFRVRDTGPGIPDADLPHVFDRFQRGSA 785

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           ++     G+GLGL +A+ +V+A+ G+ +  S P  GT +    
Sbjct: 786 ARWR---GSGLGLAIARGLVEAHGGRIWAESAPGAGTTVSFTL 825



 Score = 45.4 bits (106), Expect = 0.038,   Method: Composition-based stats.
 Identities = 37/329 (11%), Positives = 86/329 (26%), Gaps = 19/329 (5%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN------HIGDLLKRQNTW 143
           DA G + + ++   +  G+ A    G    +                  +   L+     
Sbjct: 496 DAGGQVVQANDAARRIWGSRAPLRPGALYREQRARRADSGAPLAAGDWALQRALRSGEAV 555

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
            G+            V +   A PI        G     +  +  V    RA+  R +  
Sbjct: 556 GGELVEIDRFDGTQAV-VLNGAAPIRDGEGRVVGA----VTTLLDVTELRRAVRNRDEVL 610

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
               H+++   S+V      +      P       + ++       + + L  +   L T
Sbjct: 611 QVVSHDLRTPLSAVTLGAAALTRLPDGPEAAAQARRAAARLAAAGRRMNRLIDDLLDLET 670

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
            EE  L  + +            +    L+  ++     L     P L     + + +  
Sbjct: 671 LEEGRLSMRPEPC---DPADLLGEAADQLREAARAKGLDLCLSAAPGLPPVACDRDRVLQ 727

Query: 324 ETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
              +           G +  A  +     +        +      + DA      +  + 
Sbjct: 728 VLGNVASNAVKATEEGAVCLAAEA-----QADGAVIFRVRDTGPGIPDADLPHVFDRFQR 782

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLA 412
               R   + +  +     ++ +     A
Sbjct: 783 GSAARWRGSGLGLAIARGLVEAHGGRIWA 811


>gi|254285757|ref|ZP_04960720.1| sensor histidine kinase LuxQ [Vibrio cholerae AM-19226]
 gi|150424254|gb|EDN16192.1| sensor histidine kinase LuxQ [Vibrio cholerae AM-19226]
          Length = 857

 Score =  295 bits (756), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 82/377 (21%), Positives = 161/377 (42%), Gaps = 21/377 (5%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           R++  +  Q   +         + N  G ++  N +    F              FL + 
Sbjct: 350 RRLANKEKQFEDLFNFALSPTMLWNTSGRLIRMNPSAQIQFLREDAQ------NHFLFEI 403

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT-MHDISE 563
               +   +T     +    +         + ++    +    +       +T   DI+ 
Sbjct: 404 LERQLLPTITSAAQGNNPSDVTTEV-----DGRVYRWNLSPIMVEGQIISIITQGQDITT 458

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + + +   A++ AE+ +  +++FLA++SHE+RTPL  ++G S+++K        N   
Sbjct: 459 IAEAEKQSQAARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRTPL----NDEQ 514

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            E+   +  SG  +L ++ND+LD S++E GK  +      L E V     + +   NEK 
Sbjct: 515 REHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKNEFRLKELVCAIDRIYRPLCNEKG 574

Query: 684 ILIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EVIL 739
           + +  +        + +D   + QI  N+L+NAI FT  G  I +       +   ++++
Sbjct: 575 LELVVNSNITTAAIVRSDQIRINQILFNLLNNAIKFTHQGS-IRVELQLIEGDPLAQLVI 633

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
           +V DTG+G+   +L    +PF Q  ++      G+GLGL +  ++V+   G+ ++ S   
Sbjct: 634 QVVDTGIGIREQDLTVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHVSSEYG 693

Query: 800 KGTLIEIIFPLYDTSHP 816
            GT  EI  P+     P
Sbjct: 694 IGTRFEIQLPIELVEKP 710


>gi|108757873|ref|YP_630606.1| putative sensory box histidine kinase/response regulator
           [Myxococcus xanthus DK 1622]
 gi|108461753|gb|ABF86938.1| putative sensory box histidine kinase/response regulator
           [Myxococcus xanthus DK 1622]
          Length = 763

 Score =  295 bits (756), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 106/632 (16%), Positives = 197/632 (31%), Gaps = 42/632 (6%)

Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254
           A    ++             +   +      S       +  +   S +    A +    
Sbjct: 12  ADLAPVESWLREQGHTVVTVTREAEVPAAWRSGTCALVMVDARTDPSRVPLVRALRSLPG 71

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
             E   LL     +L           +                E       R        
Sbjct: 72  GEESVLLLLGHRGALGGLRPVLEAGADDLLAWPVDEEELALRLELAHRRFVRREGRKGLP 131

Query: 315 FDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
           F +    T   V   P      + G +  AN ++  L  Y   + I        L  AP 
Sbjct: 132 FGDDLKETLLAVSPVPTSITTITEGRVVAANEAYFELFGYTREEVIGRTTMELALWQAPL 191

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
               N  + V   R   T     A+  T     E    + F+        P         
Sbjct: 192 ----NRSQIVDTLRRHGTVRGVDAQYRT--REGELRHTLLFMGLVPYGGTP---HIIAFF 242

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDIL 493
           P+    +  +  +    +   +++ +  D +A+ + +  +   N  V+   GY    ++L
Sbjct: 243 PDITPLKRAEESLRRSEVSFRTLIGSLPDMVAVFDTDSRVRYANLKVATALGYESANELL 302

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553
            K F+  + +   +  N  + E +        E+  L        +              
Sbjct: 303 GKHFSDIIPKEDFASANARMHEAIRTGRAAHQERRLLKRDGSVLHVESTTFPLPFDGEDS 362

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
                HD++E  Q + +L  A+++A   +       A V+HEI  PL  +       + +
Sbjct: 363 IVAVSHDLTERYQMQARLMLAQRMASVGT-----LAAGVAHEINNPLAYLTANLAFAREE 417

Query: 614 RFGPLGN-------------PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
             G L                          +  + V  IV DL   S+++S       E
Sbjct: 418 LTGVLPTGTRNMEPRLAEAVASAQAALAEAQQGADRVRSIVRDLKTFSRVDSA----ESE 473

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF-- 718
            V + + +   ++L        R  +       +P ++ +   + Q+ LN+L NA     
Sbjct: 474 EVDVRQVLESTLNLATTEI-RHRARLVKQLDA-VPTVVGNESRLGQVFLNLLVNAAQAIP 531

Query: 719 --TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
             TP   +I + T  + N  V + V DTG G+    L +   PF            GTGL
Sbjct: 532 SGTPERHEIRVVTRLSGNGHVCVEVSDTGAGIAKEHLPRLFDPFFTTKEPGV----GTGL 587

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           GL +  ++V A  G+ +  S P +G+  +++ 
Sbjct: 588 GLSICHSLVTALGGEIHATSEPGRGSTFQVLL 619



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/266 (10%), Positives = 66/266 (24%), Gaps = 12/266 (4%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151
            G +   +E   +  G    ++IG    +++        + I D L+R  T  G    + 
Sbjct: 155 EGRVVAANEAYFELFGYTREEVIGRTTMELALWQAPLNRSQIVDTLRRHGTVRGVDAQYR 214

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
                L   +    L  Y        F                   +R +  F  L    
Sbjct: 215 TREGELRHTLLFMGLVPYGGTPHIIAF-----FPDITPLKRAEESLRRSEVSFRTLIGSL 269

Query: 212 KGHSSVEKEKYDIFSQQ---SPPPHLRMKNKVSS--LTEYYAHKDDVLKTEKYPLLTSEE 266
               +V      +       +        N++     ++    +D      +        
Sbjct: 270 PDMVAVFDTDSRVRYANLKVATALGYESANELLGKHFSDIIPKEDFASANARMHEAIRTG 329

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
            +  ++      + +    +     L  + ++S   +SH                   +V
Sbjct: 330 RAAHQERRLLKRDGSVLHVESTTFPLPFDGEDSIVAVSHDLTERYQMQARLMLAQRMASV 389

Query: 327 DKCPIPFF--VYSHGNLFYANPSFLL 350
                     + +      AN +F  
Sbjct: 390 GTLAAGVAHEINNPLAYLTANLAFAR 415



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/241 (7%), Positives = 59/241 (24%), Gaps = 8/241 (3%)

Query: 90  DAHGYLKEISEELPKTIGNYAF-KMIGMRLCDVSDILHIDPNNHIG-DLLKRQNTWYGKT 147
           D    ++  + ++   +G  +  +++G    D+         N    + ++     + + 
Sbjct: 277 DTDSRVRYANLKVATALGYESANELLGKHFSDIIPKEDFASANARMHEAIRTGRAAHQER 336

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
            L   +G+ L+V      LP    +          + H        +A      +  S  
Sbjct: 337 RLLKRDGSVLHVESTTFPLPFDGED------SIVAVSHDLTERYQMQARLMLAQRMASVG 390

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
                    +      + +  +           +          + + + +  L  +++ 
Sbjct: 391 TLAAGVAHEINNPLAYLTANLAFAREELTGVLPTGTRNMEPRLAEAVASAQAALAEAQQG 450

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
           +   +     +             +                    A   +  +  P  V 
Sbjct: 451 ADRVRSIVRDLKTFSRVDSAESEEVDVRQVLESTLNLATTEIRHRARLVKQLDAVPTVVG 510

Query: 328 K 328
            
Sbjct: 511 N 511


>gi|78779823|ref|YP_397935.1| two-component sensor histidine kinase [Prochlorococcus marinus str.
           MIT 9312]
 gi|78713322|gb|ABB50499.1| multi-sensor signal transduction histidine kinase [Prochlorococcus
           marinus str. MIT 9312]
          Length = 689

 Score =  295 bits (756), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 79/394 (20%), Positives = 176/394 (44%), Gaps = 41/394 (10%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            +++   ++  S++   +DG  +++ +G I+ TN    +LF +    +  K F   + + 
Sbjct: 289 EELKAAQIKQQSLIATMADGAILLDSQGKIVLTNPTAKRLFRWEGRFLEGKYFLNEIPEI 348

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEE-KLLSLRIIIKKLPFSSCYSLTMHDISE 563
             + ++  +  IL+ +  +   + +LG      +++   ++          ++T+ D++ 
Sbjct: 349 LSNDLHTNIESILNREKEKDDLRFSLGEPARTLRIVLQSVLDTNKVELKGIAVTIQDLTR 408

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
                           + ++ ++ F++ VSHE+RTPL  I  + E + + +   L N   
Sbjct: 409 --------------EVELNAAQNRFISNVSHELRTPLFNIKSYVETLHDLK-DQLSNEEQ 453

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
           +E+    +   + +  +VND+LD+S++ESGK+ +  E + +  A+ + +   +L A EK 
Sbjct: 454 LEFLGIANSETDRLTRLVNDVLDLSRLESGKI-IQLEEMDIKAAIEQTLRNYRLNATEKN 512

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-------- 735
           + +      NIP IL +   + Q+  N+L N + F+P    ++I      +         
Sbjct: 513 VSLAHDIEENIPPILGNFDLLLQVFDNLLGNGLKFSPKNSNLMIRAYAWPDSCPAFPPSK 572

Query: 736 ---------------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
                          +V + + DTG G++  + EK    F ++ N+     +GTGLGL +
Sbjct: 573 QNDRAPQCELVSPLPKVRIEIADTGSGISQTDQEKIFDRFFRVENAV-HTEQGTGLGLSI 631

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
            + +++ + G+  + S    GT       L  + 
Sbjct: 632 VRGIIEKHGGEIRMASELGIGTTFWFDLALAQSD 665


>gi|167647630|ref|YP_001685293.1| PAS/PAC sensor hybrid histidine kinase [Caulobacter sp. K31]
 gi|167350060|gb|ABZ72795.1| PAS/PAC sensor hybrid histidine kinase [Caulobacter sp. K31]
          Length = 653

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 98/526 (18%), Positives = 178/526 (33%), Gaps = 39/526 (7%)

Query: 307 NHPSLSAYFDEGENLTPETVDKCPI--PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364
           +  S    F   E      VD       + +   G +   N        YK  + I    
Sbjct: 2   DDRSDLTAFQTDEGRYKLLVDAITDYAVYMLDPTGRVISWNAGAERFKGYKPHEIIGQ-- 59

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
             S        +       +     +            ++ +     A   +        
Sbjct: 60  HFSRFYTEEDRAAGVPAAALAQAIREGR---FDQEGWRVRKDGSRFWA-HVVIDPIVLPG 115

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSK 483
            E +    I  +  + R  +  +     Q   ++E  +D  I +++  G + S N    +
Sbjct: 116 GELVGFAKITRDLTERRAAEETLRRSEEQFRLLVEGVTDYAIYMLDPTGRVSSWNAGAQR 175

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           + GY  ++I+ + F+ F  +            +         EK      K+       +
Sbjct: 176 IKGYGPDEIIGEHFSRFYTEEDRRAGGPE-AALRIAAAEGRCEKEGWRLRKDGTRFWAHV 234

Query: 544 IIKKLPFSSCYSLTM----HDISEWKQEKNKLSHAKKIAEKES--SHKSDFLARVSHEIR 597
           II  +       ++      DI+E +Q +  L  A++   +             ++H+  
Sbjct: 235 IIDPIRDDQGQVISFAKITRDITERRQTQRALEEAREALFQAQKLEAIGQLTGGLAHDFN 294

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
             LTA++G  E +  +R     +PR     +           +   +L  ++    K  L
Sbjct: 295 NLLTAVLGSLE-LVRKRLPE--DPRISPLIDNAIHGAQRGAVLTQRMLAFAR----KQEL 347

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
             EPV L    +    L Q  +    I I+TSF   +   L D   ++   LN++ NA  
Sbjct: 348 RLEPVDLPALATGMAGLFQ-RSVGPAIQIQTSFPAGLAPALTDANQLENALLNLVVNARD 406

Query: 718 FTPSGGQIIISTTHT-----------SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
             P GG I I  ++              + V L V DTG GM      +A +PF      
Sbjct: 407 AMPEGGVIRIEASNETVAAASASGLPPGDYVRLAVIDTGQGMDAETRARATEPFYTTKG- 465

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
               G+GTGLGL +   + + + G+  I S   +GT +E+  PL +
Sbjct: 466 ---VGKGTGLGLSMVHGLAEQSGGRLLIRSEAGEGTAMEMWLPLAE 508



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 62/516 (12%), Positives = 133/516 (25%), Gaps = 44/516 (8%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + +D  G +   +    +  G    ++IG                    L +       
Sbjct: 29  VYMLDPTGRVISWNAGAERFKGYKPHEIIGQHFSRFYTEEDRAAGVPAAALAQAIREGRF 88

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
               W +          +   PI     E  GF    I              +R +++F 
Sbjct: 89  DQEGWRVRKDGSRFWAHVVIDPIVLPGGELVGFAK--ITRDLTERRAAEETLRRSEEQFR 146

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHL---RMKNKVSS--LTEYYAHKDDVLKTEKYP 260
            L E    ++    +     S  +           +++     + +Y  +D      +  
Sbjct: 147 LLVEGVTDYAIYMLDPTGRVSSWNAGAQRIKGYGPDEIIGEHFSRFYTEEDRRAGGPEAA 206

Query: 261 LLTSEESSLPEQEDFH-TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
           L  +      E+E +    +  ++        ++++  +   +       +         
Sbjct: 207 LRIAAAEGRCEKEGWRLRKDGTRFWAHVIIDPIRDDQGQVISFAKITRDITERRQTQRAL 266

Query: 320 NLTPETVDKCP--------IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
               E + +               +   NL  A    L L + +  +D  I+  +   + 
Sbjct: 267 EEAREALFQAQKLEAIGQLTGGLAHDFNNLLTAVLGSLELVRKRLPEDPRISPLIDNAIH 326

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR-ENSLAMTFIPFEKANQFPENMPQ 430
             +       + +   R          RL  +        +A  F          +    
Sbjct: 327 GAQRGAVLTQRMLAFARKQ------ELRLEPVDLPALATGMAGLFQRSVGPAIQIQTSFP 380

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR--AVSKLFGYP 488
            G+ P   D    +  +   V+      +A  +G  I      I ++N   A +   G P
Sbjct: 381 AGLAPALTDANQLENALLNLVVNAR---DAMPEGGVI-----RIEASNETVAAASASGLP 432

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
             D +R       +                   R T    T     +   L L ++    
Sbjct: 433 PGDYVRLAVIDTGQGMD-----------AETRARATEPFYTTKGVGKGTGLGLSMVHGLA 481

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
             S    L   +  E    +  L  A++  E  S  
Sbjct: 482 EQSGGRLLIRSEAGEGTAMEMWLPLAERGGEPASLA 517


>gi|60682012|ref|YP_212156.1| putative two-component system sensor histidine kinase [Bacteroides
           fragilis NCTC 9343]
 gi|60493446|emb|CAH08232.1| putative two-component system sensor histidine kinase [Bacteroides
           fragilis NCTC 9343]
          Length = 812

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 95/517 (18%), Positives = 194/517 (37%), Gaps = 39/517 (7%)

Query: 313 AYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
                 E L  +     P+   +Y+  G L   N   L +        I        L +
Sbjct: 311 ERVMHSEKLFHDIFTNIPVGLELYNKEGVLLDCNNRNLEIFGVGDKSRIIGLN----LFE 366

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW----NRENSLAMTFIPFEKANQFPEN 427
           +P ++ +       L                 +      R   + +        +     
Sbjct: 367 SPNMTRDIHES---LRAGRPGTFHLKYDFDEERRLFQSERRGVMDLDIRSLMLYDAEDNL 423

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG---IAIINREGIILSTNRAVSKL 484
                +  ++ +      K+         I + +  G   I +++  G      R   + 
Sbjct: 424 SNYLLVNIDNTERNNALSKVHDFENFFSIISDYSKVGYAKINLLDHTG---FAVRQWYRN 480

Query: 485 FGYPVEDILRKPFTVF--LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE--KLLS 540
            G   +  L     +F  +  +    +  +  +  +    +  +        +   +   
Sbjct: 481 LGESHDTPLADIIGIFSHMHPDDRKSVLDFYEKAKA-GTERFFDGDLRIRPADGSDRWNW 539

Query: 541 LR----IIIKKLPFSS-CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
           +     +   + P          +DI+  K+ + +L  A+  AE+ +  KS FLA +SHE
Sbjct: 540 IHKSSMVTAYQSPNPRLELVEVNYDITVQKETEAELRAARDKAEESNRLKSAFLANISHE 599

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           IRTPL AI+GFS+++              E+   I ++  L+L + +D++D+SKI++G  
Sbjct: 600 IRTPLNAIVGFSDLLM----TVDDPAEQEEFRRTIQKNNTLLLQLFSDIIDLSKIDAGSF 655

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSN 714
               +PV L +  +  +  ++   +E  + ++    + +     AD   + Q+  N +SN
Sbjct: 656 EYTPKPVCLYQFCAMMVQKMRNKVSE-GVELQIDEDSPLDAWFSADSGYLNQVVTNFMSN 714

Query: 715 AIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           AI FT  G  I +     + +++ + V DTG+G++    E     F ++ +      +GT
Sbjct: 715 AIKFTHRG-TITVGYRIDARQQLEMFVEDTGIGISIENQEAVFDRFMKVDSF----VQGT 769

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
           GLGLPL K++++   G   + S   KG+      P +
Sbjct: 770 GLGLPLCKSIIEKMGGHIGVISELGKGSRFWFTLPAF 806



 Score = 46.9 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 44/302 (14%), Positives = 87/302 (28%), Gaps = 48/302 (15%)

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
           +L++P      A++   +   + T     A L  ++           I         E+ 
Sbjct: 233 ILNSPDELPPLAVRDREVLAENGTNSMMLAPL--MREEGVWGYMGIDIVDGYRKWNSEDY 290

Query: 429 PQNGIEPED----VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
                        ++ RI K ++         I      G+ + N+EG++L  N    ++
Sbjct: 291 QWFSSLANIISICMELRIIKERVMHSEKLFHDIFTNIPVGLELYNKEGVLLDCNNRNLEI 350

Query: 485 FGY-PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL------EKITLGSTKEEK 537
           FG      I+           +P++       + +             E+  L  ++   
Sbjct: 351 FGVGDKSRIIGLNLF-----ESPNMTRDIHESLRAGRPGTFHLKYDFDEERRLFQSERRG 405

Query: 538 LLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESS------HKSD 587
           ++ L I    L  +      Y L   D +E     +K+   +      S        K +
Sbjct: 406 VMDLDIRSLMLYDAEDNLSNYLLVNIDNTERNNALSKVHDFENFFSIISDYSKVGYAKIN 465

Query: 588 FLARV-------------SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
            L                SH+  TPL  IIG    +      P      +++        
Sbjct: 466 LLDHTGFAVRQWYRNLGESHD--TPLADIIGIFSHM-----HPDDRKSVLDFYEKAKAGT 518

Query: 635 NL 636
             
Sbjct: 519 ER 520


>gi|299831225|gb|ADJ55753.1| hypothetical protein [Clostridium sporogenes]
          Length = 616

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 88/413 (21%), Positives = 174/413 (42%), Gaps = 15/413 (3%)

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN-----KRKMEIEVMQLCSILEATSD 463
            +  + +    +     +   +  I   ++D +       ++ +         +++ + D
Sbjct: 176 TAWPLGYYVNIQKEDLRQKEEKVNILTTELDQKEMQKTYMEQLLIKNENCYNLLIKNSKD 235

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVED-ILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522
            I +   +  I+  N    ++ GY              + +   S++ +   ++   +  
Sbjct: 236 AILVHRFD-KIIFANERAKQMLGYKENYNFEDTDIKNLIPKGEYSIIKNKFQDLYCGNEN 294

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES 582
               +  + + KE+K +                  +HDI+   Q +      KK  E  +
Sbjct: 295 IIKFQHGVNNNKEKKTIQNTSTYVIYNGMPTVLSILHDITSKIQVEKLEQDVKKNIELLN 354

Query: 583 SHK------SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
             +      ++FL+ +SHE++TPL  I    + +       +   +  +Y   I ++   
Sbjct: 355 ESREYNKLITEFLSNISHELKTPLNVIFTAVQ-LLGFYEKDVDYEKEDKYLKLIKQNCYR 413

Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696
           ++ ++N+LLD +K++SG + L+    ++   + E    V  YA  K I I          
Sbjct: 414 LMKLINNLLDTTKLDSGYLKLNLVNYNIVSLIEEITLSVTSYAESKEINIIFDTNVEEKI 473

Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKA 756
           I  D   +++I LN+LSN+I FT  GG I ++   +    V + V+DTGVG+ + +LE  
Sbjct: 474 IAVDPDKIERIILNLLSNSIKFTNPGGNIFVNVKDSEE-YVYIHVKDTGVGIPSDKLESI 532

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            + F QI  + +   EGTG+GL L K+ V+ + G+  I S   KGT   I  P
Sbjct: 533 FERFFQIDKTLKKNKEGTGIGLHLVKSFVEMHKGEVTINSELGKGTEFIIKLP 585


>gi|256421296|ref|YP_003121949.1| GAF sensor hybrid histidine kinase [Chitinophaga pinensis DSM 2588]
 gi|256036204|gb|ACU59748.1| GAF sensor hybrid histidine kinase [Chitinophaga pinensis DSM 2588]
          Length = 1162

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 83/314 (26%), Positives = 153/314 (48%), Gaps = 11/314 (3%)

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
              + +   L  +         ++  L  + EE      I+             +  I++
Sbjct: 410 EARASVLQLLERVQEQKEILETQQEELRQSNEELTRQSEILQASEEELRVQEEELRQIND 469

Query: 564 --------WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
                    +  + +LS   +  E+ S +KS+FLA +SHE+RTPL +++  +  +  +  
Sbjct: 470 EMTVQNKALEIARQQLSLKAEELEQSSRYKSEFLANMSHELRTPLNSVLILA-RLLEENK 528

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
               + + ++YA  I +SG+ +L ++ND+LD+SKIE+GK+ +  EPVS+   VS+   L 
Sbjct: 529 DRNLSSKQVDYAGIIHKSGSDLLKLINDILDLSKIEAGKVEMQIEPVSVSAMVSDLEQLF 588

Query: 676 QLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
           ++ A+EK I   T  A  +P  +  D + ++Q+  N+LSNA  FTP  G I +  T  ++
Sbjct: 589 RVVADEKSIHFSTEIAAGVPATVQTDRQRLEQVIKNLLSNAFKFTPKNGNIQLRLTAAAD 648

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
             V + V D G G+   + +   + F Q   S   +  GTGLGL ++K ++    G+  +
Sbjct: 649 G-VYIAVSDNGTGIPVEKQQLIFEAFRQADGSTSRKYGGTGLGLSISKELMKRLGGEIRL 707

Query: 795 FSTPAKGTLIEIIF 808
            S   +G+   ++ 
Sbjct: 708 ESKEGQGSTFTVVL 721


>gi|218260509|ref|ZP_03475779.1| hypothetical protein PRABACTJOHN_01442 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224494|gb|EEC97144.1| hypothetical protein PRABACTJOHN_01442 [Parabacteroides johnsonii
           DSM 18315]
          Length = 519

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 92/517 (17%), Positives = 192/517 (37%), Gaps = 34/517 (6%)

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFF---VYSHGNLFYANPSFLLLTKYKSVDDIE 361
             ++ +  A   + +      +D  P P F   +         N      +     + + 
Sbjct: 26  QTSYKAREAKIIDSQQFCLNILDNLPFPVFVKDINDDFRYKLWNKEAERKSGTTREEILG 85

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
            +     +    +      I   ++       +   A    +  +      +        
Sbjct: 86  HSDF--EIYGKERGRKYRQIDEQLVKNK----VEYQAEDDYVTPDGTIHNTIVNKSVIT- 138

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS-------ILEATSDGIAIINREGII 474
                N     +  +    +  ++K+     +L +       +L + + G+  +++  ++
Sbjct: 139 --LGNNHWLLVVRWDITQIKEYEKKLIQAKEELENAIKNQNLVLNSINFGLVFVDKNYVV 196

Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
              + A              K     +           L+E +        E I   +  
Sbjct: 197 QWESTANLHEIAKGRHYSAGKVCYQTVMGRGAPCSQCALSEAIERGKPVRHELIEKDTVI 256

Query: 535 EEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
           E   + +     ++       + + DIS+ K+ +  L +  K A++ +  KS FLA +SH
Sbjct: 257 EISAIPVYTNTGEIQGG---LMKIEDISDKKRIER-LQYEVKKADEANRLKSAFLANMSH 312

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           EIRTPL AIIGFS ++              E+ + I  +  L+L ++ND++D++KIESG 
Sbjct: 313 EIRTPLNAIIGFSNLLVE----ANDPEEKKEFVHIITSNNELLLQLINDIIDMAKIESGT 368

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKR-ILIRTSFANNIPRILADLRSVKQIALNILS 713
           ++  +    +++ + +    +++       + I      +   I  D   + QI +N ++
Sbjct: 369 LDFTYSDTDINQLMEDLCQQMKMKNTRPDSVKIEFVQRQSECIINTDSNRIMQIMINFMT 428

Query: 714 NAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
           NA+ FT  G  I      +  + +   VRDTG+G+ + + E+    F ++        +G
Sbjct: 429 NAMKFTEQGS-ITFGYKKSEKD-IYFFVRDTGIGIPSDKKEQIFDRFVKLNTF----AQG 482

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           TGLGLP+   +VD   G   + S   +G       PL
Sbjct: 483 TGLGLPICAMIVDKFGGTIGVDSQQGEGATFWFRLPL 519


>gi|328873301|gb|EGG21668.1| histidine kinase [Dictyostelium fasciculatum]
          Length = 1223

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 89/423 (21%), Positives = 171/423 (40%), Gaps = 23/423 (5%)

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468
           +S  ++   F   N   +   +   E    +  + +   +        +L+     +A++
Sbjct: 2   SSHHLSLDHFPGINSNGKVDQEKSKEELIQELEVMRGLAKSNRSS-RIMLDEMYQFVALL 60

Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI---LSLDLRQTL 525
           + +G +L  N       G    +IL  PF                 +     +       
Sbjct: 61  DNKGNLLDVNEPALHGGGMIRSNILGTPFWDCRWWAVNETSMDDCKKAVMRAAAGEFIRY 120

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM----HDISEWKQEKNKLSHAKKIAE-- 579
           E    G +   + +++   +  L   +     +     +I+E K  +++++         
Sbjct: 121 ECDIFGKSAGTETITIDFSLMPLFDENGAVKLILPEGRNITEKKLAEDEIARKNNELRSL 180

Query: 580 -----KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
                +    K+ F A VSHE+RTPLT I   +E +      P  +    +    + R+ 
Sbjct: 181 YEKIKELDELKTQFFANVSHELRTPLTLISHPTEKLLKD---PGVSADAKKLLEVVARNT 237

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN- 693
             +L  VN+LLDISK+E+GKMN+++    + + ++      +L A +K++    +   + 
Sbjct: 238 RGLLKHVNNLLDISKLEAGKMNVNYSMADVGKTITTIGLCFELLAKDKKLEYIINAPKDG 297

Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT---HTSNEEVILRVRDTGVGMTN 750
           +     D   ++++  N++SNA  FTP+GG+I IS        N   ++ V DTG G+  
Sbjct: 298 LLMAAIDRDKIERVVTNLISNAFKFTPTGGKIRISVEPDQLNQNPAFLVTVADTGPGVPE 357

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFP 809
            + +   + F Q+  S   R  GTGLGL + K  V  + G   + +     G +  I  P
Sbjct: 358 DQYDIIFERFRQVDGSSSRRHGGTGLGLSIVKEFVQLHGGNVQVTAQKEGTGAVFLIRIP 417

Query: 810 LYD 812
           L  
Sbjct: 418 LSP 420



 Score =  222 bits (566), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 65/300 (21%), Positives = 119/300 (39%), Gaps = 51/300 (17%)

Query: 554 YSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
               +  ++  K+E      +L   + + ++ +  K +FL  +SHE+RTPL  I G+S++
Sbjct: 655 LVELVSQLTARKRELQVLVNELEKERVLLDRANRSKDEFLMNLSHELRTPLNGIFGWSQL 714

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           +   R+    +         I+R  +    +VNDLLD+S + SGK +L  E V + E + 
Sbjct: 715 L---RYDGNISTDVRRGLEAIERCAHAQNQLVNDLLDMSLVISGKFSLSNEVVDIREVIR 771

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
            A          K   I     +    +  D   ++Q   N++SN+I F+  GG + + T
Sbjct: 772 LAAETFINKDKAKT-KIVVDVGDLPLIVCGDPVRLEQSIWNLVSNSIKFSNQGGSVTVRT 830

Query: 730 TH------------------------------TSNEEVILRVRDTGVGMTNYELEKAMKP 759
           +                               ++    ++ + D G G+T+  L    + 
Sbjct: 831 SIPSQTGTTPLTLPPGVCGQSEEKLNLLRNHASNKNWCLVTISDQGCGITHDFLPHVFER 890

Query: 760 FGQIPNSQQI------RGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFPLYD 812
           F Q  NS          G        +   +V+ + G  + FS    KG+   II P+ +
Sbjct: 891 FRQADNSSTRGHGGLGLGL------SIVNNIVELHNGYLFAFSEGEGKGSTFTIILPISN 944


>gi|283850552|ref|ZP_06367840.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           sp. FW1012B]
 gi|283574123|gb|EFC22095.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           sp. FW1012B]
          Length = 866

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 102/733 (13%), Positives = 227/733 (30%), Gaps = 56/733 (7%)

Query: 107 GNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAAL 166
           G  +  +I +R    +             LL+ ++   G  T   I G  L       AL
Sbjct: 165 GYESSALIPIRFGATTHG-----------LLQLEDRRRGLFTRQLIAGLELVARHLALAL 213

Query: 167 PIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFS 226
                  E     G  +           A     + KF  +       + + +    IF 
Sbjct: 214 SQRQAVEELR-LAGADLERRVSERTKALA---ESEVKFRIMANAIPQLAWIAQADGHIFW 269

Query: 227 QQSP--PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDF--HTINLNQ 282
                         ++        H    L         S  +  P    F     +   
Sbjct: 270 YNDRWYEYTGTTPEQMEGWGWQRVHDPATLPDVVEQWKASIATGKPFDMVFPLRGADGRF 329

Query: 283 YTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET----VDKCPIPFFVYSH 338
                    L +++    ++       S     +E      E     ++  P    ++  
Sbjct: 330 RPFLTRINPLLDSAGRVVQWFGTNTDISEQKRMEEELREREEQLRLFIEHAPAAIAMFDR 389

Query: 339 G-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397
                  +  +L        + +  +           +      +   +++         
Sbjct: 390 EMRYMAVSQRWLTDYGMGGHNLLGRS--------HYDIFPEIPERWKKIHQRGLAGSVER 441

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
           A           +  + +                    +    ++ ++ +     Q   +
Sbjct: 442 AEDDPFLRADGATQWLRWEVRPWYTAQGAIGGIVVFSEDITARKMAEQVLRERDKQFKMV 501

Query: 458 LEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
            +A+   +AI++  E   +  N A  +L GY   +++ +        +            
Sbjct: 502 FQASPAPMAIVSFGESRYVYANDAYLRLTGYGAGELIGRTTREVGIWDAKDARGPLGGFF 561

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK- 575
            + +     E      +   K + L I   ++           DI+E K  + +L H++ 
Sbjct: 562 AAGEKVVDSEMRITTRSGAVKSVLLSIEFMEIDGRPHVLAVAKDITERKLVEEELRHSRD 621

Query: 576 ----------KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
                     +  E  ++   +F    SH+++ PL  +  F E ++ +    LG     +
Sbjct: 622 ALEDRVRERTRELESRNAELENFFYITSHDLQEPLRKVQVFGERLRLEYAEALGAA-GKD 680

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           Y   ++ +   +  ++NDLLD S++ +G     +    L E V ++   +          
Sbjct: 681 YLKRMEGAAARMQSLINDLLDYSQVATGAHVFVYA--DLGEIVRQSAEDLDRLVEMTGAT 738

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTH---TSNEEVILRV 741
           +      ++P    D+  ++Q+  N+LSNA+ +      ++ +S         E V + V
Sbjct: 739 VTVE---DLPGAEVDVVQMRQVFQNLLSNALKYHGRNPPEVRVSGEVFSDQGREMVRISV 795

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            D G+G      +K  +PF ++    +   +GTG+GL + + +V+ + G     S P KG
Sbjct: 796 ADNGIGFDPQYKDKVFQPFQRLHG--RNAYQGTGIGLAIVRKVVERHKGTVTAESEPGKG 853

Query: 802 TLIEIIFPLYDTS 814
               +  P+   +
Sbjct: 854 ARFLVTLPVNRHA 866



 Score = 94.3 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 43/413 (10%), Positives = 107/413 (25%), Gaps = 30/413 (7%)

Query: 68  LDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI 127
            +SE  F         +  W   A G++   ++   +  G    +M G     V D   +
Sbjct: 241 AESEVKFRIMANAIP-QLAWIAQADGHIFWYNDRWYEYTGTTPEQMEGWGWQRVHDPATL 299

Query: 128 -DPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHV 186
            D        +     +     L   +G   + P      P+          + FG    
Sbjct: 300 PDVVEQWKASIATGKPFDMVFPLRGADGR--FRPFLTRINPLLDSAGRVV--QWFGTNTD 355

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP--PPHLRMKNKVSSLT 244
                      +  +++     E      ++   +    +        +    + +   +
Sbjct: 356 ISEQKRMEEELREREEQLRLFIEHAPAAIAMFDREMRYMAVSQRWLTDYGMGGHNLLGRS 415

Query: 245 EYYAHKDDVLKTEKYPLLT-SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303
            Y    +   + +K      +      E + F   +      +                +
Sbjct: 416 HYDIFPEIPERWKKIHQRGLAGSVERAEDDPFLRADGATQWLRWEVRPWYTAQGAIGGIV 475

Query: 304 SHRNHPSLSAYFD----EGENLTPETVDKCPIPFFVYSHG--NLFYANPSFLLLTKYKSV 357
                 +     +    E +          P P  + S G     YAN ++L LT Y + 
Sbjct: 476 VFSEDITARKMAEQVLRERDKQFKMVFQASPAPMAIVSFGESRYVYANDAYLRLTGYGAG 535

Query: 358 DDIEIAGGLSTLLDAPKLS----------DNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
           + I        + DA              +      + +        +    +  ++ + 
Sbjct: 536 ELIGRTTREVGIWDAKDARGPLGGFFAAGEKVVDSEMRITTRSGAVKSVLLSIEFMEIDG 595

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK--RKMEIEVMQLCSIL 458
              +        +     E +       + ++ R+ +  R++E    +L +  
Sbjct: 596 RPHVLAVAKDITERKLVEEELR---HSRDALEDRVRERTRELESRNAELENFF 645



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/383 (9%), Positives = 85/383 (22%), Gaps = 20/383 (5%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D       +S+      G     ++G    D+   +           L            
Sbjct: 388 DREMRYMAVSQRWLTDYGMGGHNLLGRSHYDIFPEIPERWKKIHQRGLAGSVERAEDDPF 447

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
              +G   ++  ++   P Y+      G   F              + +  DK+F  + +
Sbjct: 448 LRADGATQWLRWEV--RPWYTAQGAIGGIVVF--SEDITARKMAEQVLRERDKQFKMVFQ 503

Query: 210 IKKGHSS-VEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
                 + V   +                     +   T      D            + 
Sbjct: 504 ASPAPMAIVSFGESRYVYANDAYLRLTGYGAGELIGRTTREVGIWDAKDARGPLGGFFAA 563

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
              +    +      +   K                 L+     +     +E    + + 
Sbjct: 564 GEKV-VDSEMRITTRSGAVKSVLLSIEFMEIDGRPHVLAVAKDITERKLVEEELRHSRDA 622

Query: 326 VDKCPIPFFVYSHGNLFYANPS---FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
           ++             L   N     F  +T +   + +         L         A  
Sbjct: 623 LEDR----VRERTRELESRNAELENFFYITSHDLQEPLRKVQVFGERLRLEYAEALGAAG 678

Query: 383 PVMLYRSDRTCIAASA---RLHTIQWNRENSLAMTFIPFEKA-NQFPENMPQNGIEPEDV 438
              L R +       +    L         +    +    +   Q  E++ +        
Sbjct: 679 KDYLKRMEGAAARMQSLINDLLDYSQVATGAHVFVYADLGEIVRQSAEDLDRLVEMTGAT 738

Query: 439 DTRINKRKMEIEVMQLCSILEAT 461
            T  +    E++V+Q+  + +  
Sbjct: 739 VTVEDLPGAEVDVVQMRQVFQNL 761


>gi|163743182|ref|ZP_02150564.1| sensory box histidine kinase/response regulator [Phaeobacter
           gallaeciensis 2.10]
 gi|161383599|gb|EDQ07986.1| sensory box histidine kinase/response regulator [Phaeobacter
           gallaeciensis 2.10]
          Length = 880

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 105/586 (17%), Positives = 210/586 (35%), Gaps = 29/586 (4%)

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
           V  +    A +   L  E    L    ++  +   +          K     L     + 
Sbjct: 10  VGLVLALLAVQSVRLGREVLVRLEVLSTAATDSLQWTLSQAEIEQLKLENAVLSARDAQD 69

Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDD 359
              +        S      E+ T ++V + P              N   L     +    
Sbjct: 70  LSQVRREFDILYSRVATIRESRTFKSVREAPE-------------NAQILQRVMARIDTL 116

Query: 360 IEIAGGLST--LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
           I    G     L   P++S         L       +A  AR+   +     ++      
Sbjct: 117 ITYIDGPDEALLFGLPQVSKILRKNRDDLRVLALAGLAEHARITEEKRLNLFAILSRLAW 176

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
              A      +    +       +    +    V ++ +++ ++ D I ++  +G I   
Sbjct: 177 VVLALCVALALTALMMGRLYQRGKRLAERTRFAVARMRAMITSSLDAILVVGDDGRIQEV 236

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNT-PSVMNHYLTEILSLDLRQTLEK---ITLGST 533
           N A   +FGY   +         +  +         +    +    + + +         
Sbjct: 237 NGAAETIFGYSRGEATGADMAQLIVPDHLRDAHEQGMQAYRAGGTAKVIGQGRVQLEAKR 296

Query: 534 KEEKLLSLRIIIKKLPFSSCYSLT--MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
           K  ++  + + I     +        + DIS+    + +L+  +  A      K+D L  
Sbjct: 297 KSGEIFPVELSITASQSAEETVFVSYLRDISDRIAAEEELTRTRDEALAGERAKADLLTV 356

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           +SHE+RTPLT ++G  E+++     P       +Y + I  SG+ ++  VND+L +S++E
Sbjct: 357 MSHEMRTPLTGVLGAVELLEGTALSP----DQHDYVSAIRTSGDRLMAHVNDVLQLSQLE 412

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANE--KRILIRTSFANNIPRILADLRSVKQIAL 709
           +     H    +L + V E I   Q  A      + +  S   +   +L    ++K++ +
Sbjct: 413 TSVDYEHQRIFNLSDLVQELIDAHQSTARRGRNDLSLHCSLGASGGDVLGRPVALKKVLV 472

Query: 710 NILSNAIHFTPSGGQIIIST-THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
           N++ NA+ FT  G  + +       ++ V + + DTG G+   +L++  + F ++  S  
Sbjct: 473 NLIENALQFTTDGA-VSVDVQRLGQSDTVEISIADTGAGIAERDLDRIFEDFIRLDASYA 531

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
              EGTGLGL + + +V A  G     S   +G+L  I  PL  + 
Sbjct: 532 RSSEGTGLGLAITRRIVVALGGDISCESELGEGSLFTISLPLPASH 577



 Score = 46.9 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 26/236 (11%), Positives = 56/236 (23%), Gaps = 18/236 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI-DPNNHIGDLLKRQNTW---- 143
           +   G ++E++       G    +  G  +  +    H+ D +       +   T     
Sbjct: 227 VGDDGRIQEVNGAAETIFGYSRGEATGADMAQLIVPDHLRDAHEQGMQAYRAGGTAKVIG 286

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
            G+  L     +    P++L+     S             +              R   +
Sbjct: 287 QGRVQLEAKRKSGEIFPVELSITASQSAEETV----FVSYLRDISDRIAAEEELTRTRDE 342

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
                  K    +V   +          P   +   V  L       D           T
Sbjct: 343 ALAGERAKADLLTVMSHEMR-------TPLTGVLGAVELLEGTALSPDQHDYVSAIR--T 393

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
           S +  +    D   ++  + +       + N S    E +      +     D   
Sbjct: 394 SGDRLMAHVNDVLQLSQLETSVDYEHQRIFNLSDLVQELIDAHQSTARRGRNDLSL 449


>gi|94313181|ref|YP_586390.1| PAS/PAC sensor, hybrid histidine kinase [Cupriavidus metallidurans
            CH34]
 gi|93357033|gb|ABF11121.1| PAS/PAC sensor, hybrid histidine kinase [Cupriavidus metallidurans
            CH34]
          Length = 1418

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 126/709 (17%), Positives = 235/709 (33%), Gaps = 44/709 (6%)

Query: 113  MIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172
            ++G +L DV+     D       + +      G   L      +L + +  +        
Sbjct: 346  IVGRQL-DVAVEGLNDLTGKRVVVCEA----SGVEGLLRAAVPHLQLSVVSSVHA----- 395

Query: 173  REFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP 232
                G         +   +D   +   L + F+    I           + +    SP  
Sbjct: 396  ----GMEAVANGKADAYVDDLATVDVELQRYFAGTLRIIGSGRQTLDMGFGL----SPEL 447

Query: 233  HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL 292
              R+   +      Y  + + L  +   +  S       Q+    I           G L
Sbjct: 448  GARLL-PLIDRAMEYMPQVERLAIQSRYIAASYALEPSWQQVLRRIAPYLVAVIVIIGIL 506

Query: 293  QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLL 351
              +                        +     +D  PIP  V    G     N +F   
Sbjct: 507  LRSQYRLRRE--ASARRLAKQQLQAQLDFQRTLIDAVPIPITVKDAQGRYVEVNAAFQSR 564

Query: 352  TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411
                    +   G L T L+ P      A++       +   +     +  +  + +   
Sbjct: 565  AGMTRQQMV---GHLPTELNVPGNRAAEALEAGSRRALETQQLQ-QFAVDYVDADGKQRY 620

Query: 412  AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINR 470
             +           PE         +  + R  + K +     L             +  R
Sbjct: 621  YL-CWAQPIKRVGPEFAGVISAAVDVTEIRNAEAKAQAAEAMLVDATRHLPATAFRMRER 679

Query: 471  EGII--LSTNRAVSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
            +G+      +    +L G   E ++    P                  E  +     + +
Sbjct: 680  DGVFSYEWVSGNAQQLLGRSSESLIGPANPLLGMANVEDRIAALAAAEEAKTTGRPLSAD 739

Query: 527  KITLGSTKEEKLLSLRIIIKKLPFSSC-YSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
               L    + + + +  + K  P     +     D++E ++  N L+ AK  AE  S  K
Sbjct: 740  MRLLIR-GQTRWIRIHAVPKTEPDGGVLWHGYYVDLTEERERANALAQAKDAAEAASRAK 798

Query: 586  SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
              FLA +SHEIRTP+  I+G  E+++                     SG  +  I++D+L
Sbjct: 799  DSFLAMMSHEIRTPMNGILGLIELLQRTPLTA----EQQRMVALAGESGQALGRILDDIL 854

Query: 646  DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSV 704
            D +K+E+G++ +   PV L E     +  +   A +K + ++   +  +  I+ AD   +
Sbjct: 855  DYAKLEAGRLAILRAPVDLRELFDGVLGSLLPQAFQKGLRLKQRVSAEVAAIVQADGIRL 914

Query: 705  KQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDTGVGMTNYELEKAMKPF 760
            +QI  N+L NAI FT  G  +++  T          +++ V DTG+G+   +L +   PF
Sbjct: 915  RQILFNLLGNAIKFTDHGS-VMLRATMEPGATGLPMLVVVVEDTGIGIARTDLARLFAPF 973

Query: 761  GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             Q   S   R  GTGLGL + + + +   G+  + S    GT   +  P
Sbjct: 974  MQSERSTARRFGGTGLGLTIVRTLAELMDGEITLKSEAGVGTTAVLRVP 1022



 Score = 42.3 bits (98), Expect = 0.31,   Method: Composition-based stats.
 Identities = 41/384 (10%), Positives = 98/384 (25%), Gaps = 29/384 (7%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           DA G   E++       G    +M+G    +++   +        + L+  +    +T  
Sbjct: 549 DAQGRYVEVNAAFQSRAGMTRQQMVGHLPTELNVPGN-----RAAEALEAGSRRALETQQ 603

Query: 150 W------PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                   ++           A PI     EF+G     +        +  A  +  +  
Sbjct: 604 LQQFAVDYVDADGKQRYYLCWAQPIKRVGPEFAGVISAAV--DVTEIRNAEAKAQAAEAM 661

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
                      +   +E+  +FS +    + +     SS +        +        + 
Sbjct: 662 LVDATRHLPATAFRMRERDGVFSYEWVSGNAQQLLGRSSESLIGPANPLLGMANVEDRIA 721

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGT-LQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
           +  ++   +     ++ +     +     ++ ++    E               E     
Sbjct: 722 ALAAAEEAKTTGRPLSADMRLLIRGQTRWIRIHAVPKTEPDGGVLWHGYYVDLTEERERA 781

Query: 323 PETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
                                A  SFL +  ++    +    GL  LL    L+     +
Sbjct: 782 NALAQAKDAAEAASR------AKDSFLAMMSHEIRTPMNGILGLIELLQRTPLT-AEQQR 834

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
            V L       +             E              +  + +  + +         
Sbjct: 835 MVALAGESGQALGRILDDILDYAKLEAGRLAILRAPVDLRELFDGVLGSLLPQAFQKGLR 894

Query: 443 NKRKMEIEVM--------QLCSIL 458
            K+++  EV         +L  IL
Sbjct: 895 LKQRVSAEVAAIVQADGIRLRQIL 918


>gi|296389404|ref|ZP_06878879.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           PAb1]
          Length = 640

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 80/493 (16%), Positives = 173/493 (35%), Gaps = 37/493 (7%)

Query: 335 VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394
           + S G +   +     L  + + + +      +              + +    ++    
Sbjct: 22  LDSAGRIASWSAGAARLFGHDASEILGR--DYACFHTRKDRDAGVPQQALRQADAEGR-- 77

Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
                   ++ N +   A   I     +   + +    +  +  + R  K  +     Q 
Sbjct: 78  -FETEGWRVRSNGKRFWAQVVIDAI-RDSQGQLLGFAQLIHDLSEGRAAKEALRRSQEQF 135

Query: 455 CSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
             ++++ +D  I +++  G I + N    ++ GY  E+++ + F+ F             
Sbjct: 136 RLLVQSVTDYAIYMLDHRGRITNWNLGAQRIKGYLPEEVIGRHFSCFYTPEDREAGEPA- 194

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKN 569
             + + +     EK      K+       ++I  +  S    +       DI+   + + 
Sbjct: 195 RGLAAAEREGRFEKEGWRVRKDGSRFWANVVIDPIRDSDGRLIGFAKVTRDITHRIEAER 254

Query: 570 KLSHAKKIAEKESSH--KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
           +L  A++   +             V+H+    LT IIG   ++K +  G   + R  +  
Sbjct: 255 ELERARQELFQAQKMESLGHLTGGVAHDFNNLLTVIIGSLGLLKKRLPG---DQRTADLL 311

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
                +     ++   +L  ++    K  L  +P ++ + +     L+        + I 
Sbjct: 312 QNALEAAQRGANLTQRMLSFAR----KQRLDPQPCAIPDLLRGMTDLLIHSL-GPSVSIE 366

Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST-----------THTSNEE 736
           T F  ++   L D   ++   +N+ +NA    P+GG+I+ S                   
Sbjct: 367 TRFPLDLDLGLTDANQLELSIINLATNARDAMPNGGRIVFSASNQRVPADNPHRLAPGNY 426

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           + L + DTG GM    L +A++PF          G GTGLGL +   + +   G+  + S
Sbjct: 427 ICLSISDTGSGMDEETLRRAVEPFYTTKG----VGRGTGLGLSIVDGLAEQLGGRLTLES 482

Query: 797 TPAKGTLIEIIFP 809
            P  GT   I  P
Sbjct: 483 QPGVGTTANIWIP 495



 Score = 76.2 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/244 (10%), Positives = 73/244 (29%), Gaps = 8/244 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D+ G +   S    +  G+ A +++G            D       L +       +T 
Sbjct: 22  LDSAGRIASWSAGAARLFGHDASEILGRDYACFHTRKDRDAGVPQQALRQADAEGRFETE 81

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
            W +          +    I     +  GF    ++H        +   +R  ++F  L 
Sbjct: 82  GWRVRSNGKRFWAQVVIDAIRDSQGQLLGFAQ--LIHDLSEGRAAKEALRRSQEQFRLLV 139

Query: 209 EIKKGHSS-VEKEKYDIFSQQSPPPHLR--MKNKVSS--LTEYYAHKDDVLKTEKYPLLT 263
           +    ++  +   +  I +       ++  +  +V     + +Y  +D         L  
Sbjct: 140 QSVTDYAIYMLDHRGRITNWNLGAQRIKGYLPEEVIGRHFSCFYTPEDREAGEPARGLAA 199

Query: 264 SEESSLPEQEDFH-TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
           +E     E+E +    + +++        ++++      +       +     +      
Sbjct: 200 AEREGRFEKEGWRVRKDGSRFWANVVIDPIRDSDGRLIGFAKVTRDITHRIEAERELERA 259

Query: 323 PETV 326
            + +
Sbjct: 260 RQEL 263



 Score = 68.5 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 24/239 (10%), Positives = 50/239 (20%), Gaps = 5/239 (2%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + +D  G +   +    +  G    ++IG            +       L   +     
Sbjct: 147 IYMLDHRGRITNWNLGAQRIKGYLPEEVIGRHFSCFYTPEDREAGEPARGLAAAEREGRF 206

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +   W +         ++   PI   +    GF       V R         + L++   
Sbjct: 207 EKEGWRVRKDGSRFWANVVIDPIRDSDGRLIGF-----AKVTRDITHRIEAERELERARQ 261

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
            L + +K  S             +    +     +         +   L           
Sbjct: 262 ELFQAQKMESLGHLTGGVAHDFNNLLTVIIGSLGLLKKRLPGDQRTADLLQNALEAAQRG 321

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
            +       F                L+  +      L            D    LT  
Sbjct: 322 ANLTQRMLSFARKQRLDPQPCAIPDLLRGMTDLLIHSLGPSVSIETRFPLDLDLGLTDA 380


>gi|317486729|ref|ZP_07945546.1| response regulator receiver domain-containing protein [Bilophila
           wadsworthia 3_1_6]
 gi|316922112|gb|EFV43381.1| response regulator receiver domain-containing protein [Bilophila
           wadsworthia 3_1_6]
          Length = 887

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 99/369 (26%), Positives = 168/369 (45%), Gaps = 15/369 (4%)

Query: 449 IEVMQLCSILEATSDGIAIINREGI-ILSTNRAVSKLFGYPVEDILR--KPFTVFLEQNT 505
               +L ++L A  D I  I+RE       +    ++ G P E  +   +     L    
Sbjct: 233 AYREKLLNLLAANIDEIFFISREDKSFEYVSSNSERVIGVPPEKFIHDYRKLYSLLACKD 292

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
              +   L +  S    + +     G     ++  + +            + + D ++  
Sbjct: 293 SDWLRAVLDDTSSNMKERDIVLGEEGRRFNIRVYPIFLNGVLSQ----RIIVLFDQTKEF 348

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
             +  LS A + A   ++ KS+FL+ +SHEIRTP+ AIIG + +   +        R  +
Sbjct: 349 AYRQALSDALENARNANTAKSNFLSHMSHEIRTPMNAIIGMTVIALTRLD---DRSRMED 405

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
               I  S   +L ++ND+LD+SKIE GK+ +  EP +   ++   I+L+Q  A E+ + 
Sbjct: 406 CLTKIALSSRHLLGLINDVLDMSKIEGGKLTIAHEPFNFKISLQGVINLIQPQALERGLD 465

Query: 686 IRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT--HTSNEEVILR-- 740
              S +  +   +L D   + QI +NILSNA+ FTP GG I +     H  N  V  R  
Sbjct: 466 FEVSLSGVDEEELLGDALRLNQILINILSNALKFTPVGGSIRLEVHQLHKKNNNVQFRFV 525

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           +RDTG+GM+   +++   PF Q  +S   +  GTGLG+ + K +V    G  ++ S   +
Sbjct: 526 IRDTGIGMSQEFIKRLYTPFEQATSSTASKFGGTGLGMAITKNLVSLLGGTIFVKSEEGR 585

Query: 801 GTLIEIIFP 809
           GT   +  P
Sbjct: 586 GTEFTVELP 594


>gi|229522299|ref|ZP_04411715.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae TM
           11079-80]
 gi|229340284|gb|EEO05290.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae TM
           11079-80]
          Length = 857

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 82/377 (21%), Positives = 162/377 (42%), Gaps = 21/377 (5%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           R++  +  Q   +         + N  G ++  N +    F              FL + 
Sbjct: 350 RRLANKEKQFEDLFNFALSPTMLWNTSGRLIRMNPSAQIQFLREDAQ------NHFLFEI 403

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT-MHDISE 563
               +   +T+    +    +         + ++    +    +       +T   DI+ 
Sbjct: 404 LERQLLPTITKAAQGNNPSDVTTEV-----DGRVYRWNLSPIMVEGQIISIITQGQDITT 458

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + + +   A++ AE+ +  +++FLA++SHE+RTPL  ++G S+++K        N   
Sbjct: 459 IAEAEKQSQAARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRTPL----NDEQ 514

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            E+   +  SG  +L ++ND+LD S++E GK  +      L E V     + +   NEK 
Sbjct: 515 REHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKNEFRLKELVCAIDRIYRPLCNEKG 574

Query: 684 ILIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EVIL 739
           + +  +        + +D   + QI  N+L+NAI FT  G  I +       +   ++++
Sbjct: 575 LELVVNSNITTAAIVRSDQIRINQILFNLLNNAIKFTHQGS-IRVELQLIEGDPLAQLVI 633

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
           +V DTG+G+   +L    +PF Q  ++      G+GLGL +  ++V+   G+ ++ S   
Sbjct: 634 QVVDTGIGIREQDLTVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHVSSEYG 693

Query: 800 KGTLIEIIFPLYDTSHP 816
            GT  EI  P+     P
Sbjct: 694 IGTRFEIQLPIELVERP 710


>gi|186681490|ref|YP_001864686.1| integral membrane sensor signal transduction histidine kinase HepK
           [Nostoc punctiforme PCC 73102]
 gi|4336932|gb|AAD18016.1| histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186463942|gb|ACC79743.1| integral membrane sensor signal transduction histidine kinase HepK
           [Nostoc punctiforme PCC 73102]
          Length = 574

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 77/277 (27%), Positives = 134/277 (48%), Gaps = 11/277 (3%)

Query: 544 IIKKLPFSSCYSL--TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
                              I    +   +L  AK++AE  S  KS FLA VSHE+RTPL 
Sbjct: 295 APVTTEDEIGLLAKSLNRLIERVSERTKELQQAKELAEAASKAKSVFLANVSHELRTPLN 354

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           A+IG S+++++       +  +I     I+ +G  +L ++N++LD+SKIE+GKM L+ E 
Sbjct: 355 AVIGLSQLLEDDATDLGLSADFITDLETINSAGKHLLHLINEILDLSKIEAGKMTLYPET 414

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
             +   ++  +  V+    +   ++   F   +  + AD   ++Q+ LN+LSNA  FT +
Sbjct: 415 FEIATLINNVVLTVKPAIEKNANVLEVHFDEQLGTMYADQTRMRQVLLNLLSNASKFT-T 473

Query: 722 GGQIIISTTHTSN--------EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
            G++ ++                +   V DTG+GM+N + ++  +PF Q   S   +  G
Sbjct: 474 NGKVTLTVKREKEELRLDAPLGMITFTVTDTGIGMSNRQQQQLFQPFTQGDTSTTKKYGG 533

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           TGLGL +++       G+  + S P  G+   I  P+
Sbjct: 534 TGLGLAISRHFCQMMGGEIIVKSQPGLGSTFTIRLPM 570


>gi|71280347|ref|YP_271164.1| sensory box sensor histidine kinase/response regulator [Colwellia
           psychrerythraea 34H]
 gi|71146087|gb|AAZ26560.1| sensory box sensor histidine kinase/response regulator [Colwellia
           psychrerythraea 34H]
          Length = 1137

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 86/415 (20%), Positives = 181/415 (43%), Gaps = 25/415 (6%)

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR--KMEIEVMQ-------LCSILEA 460
            L    +  +   Q    + Q   + + +D+R+ ++   ++    +       L S++ A
Sbjct: 400 WLHWFQVVEDIFAQNRSLLLQLTEQNDVLDSRVIEKTKALQETSTKHQRDYALLRSVMNA 459

Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM--NHYLTEILS 518
             + I   + +G ++  N+A  +L  + VE +L      F+       +   + L   + 
Sbjct: 460 IPELIVFNDPDGSLMGCNKAFERLANHSVEQMLGSNSASFMPVPLAEEIKILNALNNNVY 519

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578
                      +      +    +  I             HD++  +  ++ L  A+  A
Sbjct: 520 PQQALIKAGEFIYQGFCNQFTDEQGNIL------GTISIFHDVTSQQATQSALVKARDQA 573

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
           E  +  K  FLA +SHE+RTP+ A+ G  +++ +         R + Y      + + +L
Sbjct: 574 EYANRVKIQFLANMSHEVRTPINAMQGMMDLLAHTSLDT----RQLHYLVNAQSASSTLL 629

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RI 697
            +V++LLD+SKIE+GKM +  + V+L   +++A+ L     + +R+ I    + ++P  +
Sbjct: 630 HLVDELLDLSKIEAGKMIVSQDAVNLPIIINKALKLNITNVDHQRVKIIVDMSADVPSNV 689

Query: 698 LADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSN--EEVILRVRDTGVGMTNYELE 754
           ++D   + Q+  N+ +NAI FT  G  ++ I      +   ++  R+ DTG+G+ +    
Sbjct: 690 ISDEMRLVQVLANLFNNAIKFTEQGQIKLTIDVLSIDDTVAKLRFRMSDTGIGIASNNQS 749

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
                F Q   S   +  G+GLGL + + ++    GK  + S   +G+ +  + P
Sbjct: 750 HLFNAFSQADESMTRKYGGSGLGLSICQQIIKLLGGKIKLTSQLGQGSELSFVLP 804


>gi|118578819|ref|YP_900069.1| PAS/PAC sensor signal transduction histidine kinase [Pelobacter
           propionicus DSM 2379]
 gi|118501529|gb|ABK98011.1| PAS/PAC sensor signal transduction histidine kinase [Pelobacter
           propionicus DSM 2379]
          Length = 771

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 100/779 (12%), Positives = 233/779 (29%), Gaps = 77/779 (9%)

Query: 79  IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI----G 134
               +   +  D  G     +       G    ++ G  + DV      D          
Sbjct: 17  DSLPIPVFYK-DGQGRYLSCNSAFEDFFGMPRRQLAGTVVADV---FDRDSARLFHEMDL 72

Query: 135 DLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR 194
            L +       +  +    G    V +  A  P        +G    G +          
Sbjct: 73  RLYRNPGRQVYECRIADFRGHQRDVVVHNATFPHSG--GNETGI--VGAILDVTELKTAE 128

Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY---YAHKD 251
                    F  L +      SV      I        H  +  ++ S T +     +  
Sbjct: 129 KSLAGATSLFHRLFDAIPDLLSVVDRDMRIVYSNWHGGHEYVAEQIRSRTPFCYDAYYPG 188

Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
                +   LL    +      + H  ++       +   +++ S        +    + 
Sbjct: 189 QGEPCDPCHLLEVFRTGRSLITEKHNPHVGYQEIHAF--PVRDESGAIVMAAEYLRDITA 246

Query: 312 SAYFDEGENL----TPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGL 366
               +             ++  P+    +     L   N +   +  +K  + +     +
Sbjct: 247 RKEAEHALRQANHMLEAIINASPLAIAAFDTDVRLTLWNDAAEAMFDWKKEEVLSKPYPI 306

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
                 P+         + L      C +   R         + + ++            
Sbjct: 307 -----IPEDRMEEVRNNIRLMHEGEVCRSLETRRKR---KDGSLVDVSLSTAVMCGPDGA 358

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI--ILSTNRAVSKL 484
            +    I  +  + +   + ++    +   I E   D   ++   G   I+  N A  +L
Sbjct: 359 VIGYMSIMSDISERKQAVQALKESEERFRRIFEEDEDAALVLTP-GTFSIVDANVAAVRL 417

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI----LSLDLRQTLEK-ITLGSTKEEKLL 539
            GY   ++ +    +FL     +        +     S    + +++   +    ++ + 
Sbjct: 418 SGYSRRELRKNTPALFLGAEEFARFGETFGALGGESPSHGRPRRIDRMDVVDRNGKQMVT 477

Query: 540 SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS--HKSDFLARVSHEIR 597
           ++R  +           T  DI+E    + +    ++   + +         + ++HEI 
Sbjct: 478 AVRGRVFTSQGIPYLYCTFRDITEQLSIREERRGFEEKLMQANKMAALGTLASGIAHEIN 537

Query: 598 TPLTAIIGFSEVIKNQ------------------RFGPLGNPRYI----EYANYIDRSGN 635
            P   I+  ++ +                       G L +   I    +    +     
Sbjct: 538 NPNNYILSSTQFLLEAWKDIEWILLEYGRDNGDYTLGGLPDAEAIAVIPQLLASLQEGSG 597

Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695
            + +IV +L   ++ E    +     V ++ AV  A++L+    ++            +P
Sbjct: 598 RIRNIVENLKSFARQEDRPCD---AMVDVNVAVRAAMNLLGNQIHKHTDSFVCDLDEGVP 654

Query: 696 RILADLRSVKQIALNILSNAIH---FTPSGGQIIISTTH-TSNEEVILRVRDTGVGMTNY 751
            +   ++ ++Q+ +N+  NA+    +   G  + I T H     +V+++VRD G G+   
Sbjct: 655 SVQGSMQQIEQVVINLTMNALQSLPYKKCG--VFIRTFHDRETRQVVIQVRDQGRGIPPE 712

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF-STPAKGTLIEIIFP 809
             ++ M+PF      +     GTGLGL +  ++V  + G      S    GT+  +  P
Sbjct: 713 LRKRIMEPFFTTKQER----GGTGLGLSICCSIVKKHRGTLDCQPSAEG-GTVFSVRLP 766



 Score = 73.5 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 21/143 (14%), Positives = 50/143 (34%), Gaps = 2/143 (1%)

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           +L++    +   + +G  LS N A    FG P   +         ++++  + +     +
Sbjct: 15  VLDSLPIPVFYKDGQGRYLSCNSAFEDFFGMPRRQLAGTVVADVFDRDSARLFHEMDLRL 74

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHA 574
                RQ  E         ++ + +          +       + D++E K  +  L+ A
Sbjct: 75  YRNPGRQVYECRIADFRGHQRDVVVHNATFPHSGGNETGIVGAILDVTELKTAEKSLAGA 134

Query: 575 KKIAEKESSHKSDFLARVSHEIR 597
             +  +      D L+ V  ++R
Sbjct: 135 TSLFHRLFDAIPDLLSVVDRDMR 157


>gi|242280332|ref|YP_002992461.1| Hpt sensor hybrid histidine kinase [Desulfovibrio salexigens DSM
           2638]
 gi|242123226|gb|ACS80922.1| Hpt sensor hybrid histidine kinase [Desulfovibrio salexigens DSM
           2638]
          Length = 923

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 76/251 (30%), Positives = 124/251 (49%), Gaps = 10/251 (3%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E K    +L  AK  AE  S  KS+F+A VSHEIRTP+ AIIG +++            +
Sbjct: 255 ELKIINRELEIAKDEAEAASKSKSEFMANVSHEIRTPMNAIIGMADLTMETDLSS----K 310

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             E+   I  SG ++L ++ND+LD SKIE+GK++L     +L + + +   L        
Sbjct: 311 QREFIKIIISSGKVLLRLINDILDFSKIEAGKLSLEEVNFNLHQLIHDISDLFVEQMVAS 370

Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS----NEEV 737
           +  +       +P+ I+ D   ++Q+ +NI +NA  FT  G +III+ +         E+
Sbjct: 371 QTELVIDIRPGVPQRIIGDPLRLRQVLVNITANAFKFTSKG-EIIITVSADQINATKTEI 429

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
           +  ++DTG+G+         + F Q   S   +  GTGLGL ++K +V+   G  +  S 
Sbjct: 430 VFAIKDTGIGIPEEVQPHLFEAFKQADGSTTRKYGGTGLGLSISKRIVNLMGGNIWFRSR 489

Query: 798 PAKGTLIEIIF 808
           P  G+      
Sbjct: 490 PEDGSTFFFTI 500


>gi|1172486|sp|P45609|PHOR_SHIDY RecName: Full=Phosphate regulon sensor protein phoR
 gi|294893|gb|AAA26536.1| phosphate regulatory protein phoR (gtg start codon) [Shigella
           dysenteriae]
          Length = 431

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 74/427 (17%), Positives = 150/427 (35%), Gaps = 37/427 (8%)

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             +L       I     L  + W     L +         +        G+    +  + 
Sbjct: 33  WFLLASVTGLLIWHLWNLLRLSW----WLWVDRSMTPPPGRGSWEPLLYGLHQMQLRNKK 88

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            +R++   + +  S  E+  D + +   EG I   N    ++ G    +   +     L 
Sbjct: 89  RRRELGNLIKRFRSGAESLPDAVVLTTEEGSIFWCNGLAQQILGLRWPEDNGQNILNLLR 148

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
                    +   + + D  + L  +            L I +          +   D++
Sbjct: 149 YP------EFTQYLKTRDFSRPLNLVLNTVRH------LEIRVMPYTHKQ-LLMVARDVT 195

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  Q +                + +F A VSHE+R PLT + G+ E++  Q        +
Sbjct: 196 QMHQLEG--------------ARRNFFANVSHELRMPLTVLQGYLEMMDEQPLEGAVREK 241

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                + +      +  +V  LL +SKIE+    L  E V +   +       Q  + +K
Sbjct: 242 A---LHTMREQTQRMEGLVKQLLTLSKIEAAPTQLLNEKVDVPMMLRVVEREAQTLSQKK 298

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           +        N + ++  +   ++    N++ NA++ TP G  I +      +      V 
Sbjct: 299 Q-TFTFEIDNAL-KVSGNEDQLRSAISNLVYNAVNHTPEGTHITVRWQRVPHG-AEFSVE 355

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G G+    + +  + F ++  ++  +  G+GLGL + K  V+ +  +  I ST  KGT
Sbjct: 356 DNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHAVNHHESRLNIESTVGKGT 415

Query: 803 LIEIIFP 809
               + P
Sbjct: 416 RFSFVIP 422


>gi|110638064|ref|YP_678273.1| sensor for ctr capsule biosynthesis, histidine kinase acting on RcsB
            [Cytophaga hutchinsonii ATCC 33406]
 gi|110280745|gb|ABG58931.1| sensor for ctr capsule biosynthesis, probable histidine kinase acting
            on RcsB [Cytophaga hutchinsonii ATCC 33406]
          Length = 1093

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 112/780 (14%), Positives = 253/780 (32%), Gaps = 72/780 (9%)

Query: 89   IDAHG-YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD-LLKRQNTWYGK 146
            ID  G   + ++    + +G     +I   L +    L+    + + + +L+    +   
Sbjct: 320  IDKEGLTFRLVNPFYAELVGRKPEDLINKPLLEALPELNGQGFDTLLEGVLRSNEPYSAF 379

Query: 147  TTL--WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
                     G    V ++L   P Y  +    G     +          R   +  + K 
Sbjct: 380  EVRVELLRRGKLETVYVNLTYQPQYGVDNLVVGI--LVVATDVTQQVLARKKVEESEDKL 437

Query: 205  SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY----- 259
              +        ++      I    +               +  A     L+ + +     
Sbjct: 438  RTIVANAPAAIAMFIGPDLIIENPNQTFIDVAGKGPDIAGKPLAETFPELQRQPFLQMLN 497

Query: 260  PLLTSEESSLPEQEDFHTINLNQYTK---KQYFGTLQNNSKESFEYLSHRNHPSLSA--- 313
             + T+ ++          I      +      +  + ++    +  L      +      
Sbjct: 498  EVFTTGKTIQTHGSLIKIIQNGIEVEKYYDFTYTPISDSDGNVYAILDIAIDVTEQMIDR 557

Query: 314  -YFDEGENLTPETVDKCP--IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
               +E E      ++  P  I  +V     + + N + L +         +    +  L 
Sbjct: 558  HRLEESEQRVRSIIESAPFPIGIYVGREMRISFTNQNILDVWG-------KGNDVVGKLY 610

Query: 371  DA--PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE-NSLAMTFIPFEKANQFPEN 427
                P+L++ N  + +    +      A  +   I  +    +    +      +     
Sbjct: 611  SEVLPELANQNIYEQLDRVYTTGIPFHAKNQQVDIVVDDRLQAFYFNYSFTPLFDGAGNV 670

Query: 428  MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFG 486
                    E  D  + K+++E     L +++      + I+   + +I   N  + +L+G
Sbjct: 671  YGVMNTAAEVTDLNLAKQRVEQSEQNLRNMILQAPVAMCILSGHDHVIEIANDFMIELWG 730

Query: 487  YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
             P  DI+ +P    L       +   + ++    +    +++ +   +   L ++     
Sbjct: 731  KPKADIINRPVFDALPDARGQGLEAIMRDVYEKGITFKADEMPVQLIRNGTLETVYQNFV 790

Query: 547  KLPFSS------CYSLTMHDISEWKQEK-----------NKLSHAKKIAEKESSHKSDFL 589
              P+               D+S     +            +L+      +K ++  + F 
Sbjct: 791  YEPYREDCGKIIGVLCVTIDVSAQVLARLKIEEIVSARTQELASTNDKLQKSNAELAQFA 850

Query: 590  ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
               SH+++ PL  I  F++ +   R G   + +     + I +S   +  ++ D+L  S+
Sbjct: 851  YIASHDLQEPLRKISMFTQ-LLEGRIGNNLDEQSKTQLSKISKSAIRMNTLIKDVLSYSE 909

Query: 650  IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709
            +   K    F  V L++ V       +L   +K   I+      +P I A    + Q+  
Sbjct: 910  LI--KETEEFTSVDLNQVVENTRIDFELLIEQKNASIQYQM---LPVIEAIPLQMAQLFG 964

Query: 710  NILSNAIHF--TPSGGQIIIS---TTHTSN---------EEVILRVRDTGVGMTNYELEK 755
            N++SNA+ F  T     I I     +             +   + + D G+G+     EK
Sbjct: 965  NLISNALKFARTDIKPVITIESSLLSKEEKKAAELNLKTDYYKITLSDNGIGLNPENTEK 1024

Query: 756  AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF-STPAKGTLIEIIFPLYDTS 814
                F ++   ++   EGTG+GL + K +   + G      ST  KG +  II PL+  +
Sbjct: 1025 IFNIFQRLH--RKSDYEGTGIGLAMCKKIALNHNGDLNATGSTE-KGAVFNIILPLHKQA 1081



 Score =  123 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 74/518 (14%), Positives = 153/518 (29%), Gaps = 40/518 (7%)

Query: 95  LKEISEELPKTIGNYAFK-MIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP-- 151
           +   ++    ++G       +G +  DV   +       I  +L+     + +  L P  
Sbjct: 66  ICFYNDAYRPSLGINGKHPALGKKAKDVWPDIWDFIAPLIKQVLETNEAVWYEDQLLPIY 125

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI- 210
             G    V    +  P Y  + + SG   F            +   +  ++KF  L E  
Sbjct: 126 RNGQMEDVYWTFSYSPAYGDDGKVSGV--FVTCTETTNKVKNQKRLEESEEKFRTLIEEI 183

Query: 211 ---------KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
                    K     +  E       + P    R   +V        H + + +  K   
Sbjct: 184 PVSTCVLKGKDMVIDLANEMAIQTWGKGPDIIGRKLAEVLPELSTQPHLEILKEVFKSGN 243

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF----DE 317
             + ESS P     H I  +   KK  +  L++ S      L      S         ++
Sbjct: 244 SYTGESS-PFTLMVHGIPKSYI-KKIIYKPLRDASGNIESILGIGMDVSEKMEAQVTLEK 301

Query: 318 GENLTPETVDKCPIPFFVYSHGNLFY--ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
                    ++ P+         L +   NP +  L   K  +D+     L  L   P+L
Sbjct: 302 NLQQLVSYFEQSPVAIATIDKEGLTFRLVNPFYAELVGRKP-EDLINKPLLEAL---PEL 357

Query: 376 SDNNAIKPVM-LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
           +       +  + RS+    A   R+  ++  +  ++ +      +       +    + 
Sbjct: 358 NGQGFDTLLEGVLRSNEPYSAFEVRVELLRRGKLETVYVNLTYQPQYGVDNLVVGILVVA 417

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDIL 493
            +     + ++K+E    +L +I+      IA+    + II + N+    + G    DI 
Sbjct: 418 TDVTQQVLARKKVEESEDKLRTIVANAPAAIAMFIGPDLIIENPNQTFIDVAG-KGPDIA 476

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS--LRIIIKKLPFS 551
            KP      +         L E+ +           +   +    +          +  S
Sbjct: 477 GKPLAETFPELQRQPFLQMLNEVFTTGKTIQTHGSLIKIIQNGIEVEKYYDFTYTPISDS 536

Query: 552 SC----YSLTMHDISE----WKQEKNKLSHAKKIAEKE 581
                       D++E      + +      + I E  
Sbjct: 537 DGNVYAILDIAIDVTEQMIDRHRLEESEQRVRSIIESA 574



 Score = 87.4 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 42/292 (14%), Positives = 93/292 (31%), Gaps = 19/292 (6%)

Query: 313 AYFDEGENLTPETVDKCPIP--FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
              +E E      +++ P+           +  AN   +         DI        L 
Sbjct: 167 KRLEESEEKFRTLIEEIPVSTCVLKGKDMVIDLANEMAIQTWGKGP--DIIGRKLAEVL- 223

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT-FIPFEKANQFPENMP 429
             P+LS    ++ +             +   T+  +      +   I     +       
Sbjct: 224 --PELSTQPHLEILKEVFKSGNSYTGESSPFTLMVHGIPKSYIKKIIYKPLRDASGNIES 281

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG-IILSTNRAVSKLFGYP 488
             GI  +  +    +  +E  + QL S  E +   IA I++EG      N   ++L G  
Sbjct: 282 ILGIGMDVSEKMEAQVTLEKNLQQLVSYFEQSPVAIATIDKEGLTFRLVNPFYAELVGRK 341

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            ED++ KP    L +      +  L  +L  +   +  ++ +   +  KL ++ + +   
Sbjct: 342 PEDLINKPLLEALPELNGQGFDTLLEGVLRSNEPYSAFEVRVELLRRGKLETVYVNLTYQ 401

Query: 549 PFSS------CYSLTMHDISE----WKQEKNKLSHAKKIAEKESSHKSDFLA 590
           P            +   D+++     K+ +      + I     +  + F+ 
Sbjct: 402 PQYGVDNLVVGILVVATDVTQQVLARKKVEESEDKLRTIVANAPAAIAMFIG 453



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/293 (13%), Positives = 86/293 (29%), Gaps = 14/293 (4%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLS 367
                 +    N T   +     P F++     + + N ++              A G  
Sbjct: 33  IGTPDQWPHSLNTTLGIILHSSFPMFLFWGEELICFYNDAYRPSLGINGK---HPALGKK 89

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE-NSLAMTFIPFEKANQFPE 426
                P + D  A     +  ++   +    +L  I  N +   +  TF          +
Sbjct: 90  AKDVWPDIWDFIAPLIKQVLETN-EAVWYEDQLLPIYRNGQMEDVYWTFSYSPAYGDDGK 148

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLF 485
                    E  +   N++++E    +  +++E       ++  ++ +I   N    + +
Sbjct: 149 VSGVFVTCTETTNKVKNQKRLEESEEKFRTLIEEIPVSTCVLKGKDMVIDLANEMAIQTW 208

Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE--KLLSLRI 543
           G    DI+ +     L + +       L E+       T E            K    +I
Sbjct: 209 G-KGPDIIGRKLAEVLPELSTQPHLEILKEVFKSGNSYTGESSPFTLMVHGIPKSYIKKI 267

Query: 544 IIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
           I K L  +S           D+SE  + +  L    +            +A +
Sbjct: 268 IYKPLRDASGNIESILGIGMDVSEKMEAQVTLEKNLQQLVSYFEQSPVAIATI 320


>gi|284123128|ref|ZP_06386900.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Poribacteria sp.
            WGA-A3]
 gi|283829303|gb|EFC33707.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Poribacteria sp.
            WGA-A3]
          Length = 1062

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 102/580 (17%), Positives = 204/580 (35%), Gaps = 51/580 (8%)

Query: 254  LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT-LQNNSKESFEYLSHRNHPSLS 312
            L     P+     S+     +   +   +   +      +     + +     +     +
Sbjct: 502  LTRHGTPIDVEIHSTALINSETGDLVYTRAFVRDITERKVLQRQIDRYTTQLEQEVADQT 561

Query: 313  AYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
                E E       D+     F V   G +   N     +  Y     +      S L  
Sbjct: 562  QQLSESEKRYRVLFDRSADSIFMVEPSGVIAAVNEREQEMLGYAPDALLSQ----SLLTL 617

Query: 372  APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
             P       ++ +    S+   + A+     ++                       +   
Sbjct: 618  VPDSYKETVMRLLETAVSNEEKVPAT----ELEVFDARQTLRAVEMDVIRVGQGSTLSIM 673

Query: 432  GIEPEDVDTRINKRKMEIEVMQLC------------------SILEATSDGIAIINREGI 473
                +  + ++ + +++    +L                   S+LE  +D I  ++ +  
Sbjct: 674  AQLRDITERKLLEEQLQRHREELEEKVQARTLEIQETQKYLESLLENANDVIYTLDLDQR 733

Query: 474  ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
                N  V   +GY  ED+L +PF   L +         L +IL LD++Q  E   +  +
Sbjct: 734  FTYVNNKVEN-WGYRKEDLLGRPFLTLLAKRHRG---RRLKDILELDVKQEYEVEVISQS 789

Query: 534  KEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
             E + + + +   +    S         DI++ K  + +  + +++A           A 
Sbjct: 790  GELRSVLVSVSPLENERYSVIGVLGIARDITDRKLMEQQFRNTERLA-----SVGKLAAG 844

Query: 592  VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
            V+HEI  PL  I+     + N R G L + R  EY  Y++        IV  LLD S+  
Sbjct: 845  VAHEINNPLGGILN---CLYNIRKGTLPSERQEEYFTYMEDGLRRAQKIVRQLLDFSQ-- 899

Query: 652  SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
              +    F    ++  V   + L      EK + +   + +++P +  D + ++Q+  N+
Sbjct: 900  --QHEPEFSMNDVNGLVDRVLVLTNHVIAEKGLQLHKVYEHDLPPLFVDPQMIEQVLTNL 957

Query: 712  LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
            + NA+  T +GG II+ T   ++E   + V DTG G+          PF     + +  G
Sbjct: 958  ILNAVQATDAGGSIILQTR-RAHERCEIDVGDTGSGIPPEVRPNIFDPFFTTKGTGEGTG 1016

Query: 772  EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
             G      ++  +V+ + G+  + S   KGT+  +  PL 
Sbjct: 1017 LGL----SVSLGIVERHGGQLSVESEVGKGTVFTVSLPLS 1052



 Score =  102 bits (254), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 39/432 (9%), Positives = 113/432 (26%), Gaps = 29/432 (6%)

Query: 178 FRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK 237
                +        D       L      + E     S   ++   I  Q     +  ++
Sbjct: 279 AGWIQVTQDTHGAKDSLVGYAHLR-----IPETLASESFRGRQWLTIVRQNPEETYAPLQ 333

Query: 238 NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297
             +  +  Y      +L      +     S +    +                   +  +
Sbjct: 334 QLLVKVAMYGVVVLGILWLAGLVVARKIVSPIQTLHEGVQRIGAGNWDHPLVLKTGDEIE 393

Query: 298 ESFEYLSH---------RNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPS 347
                 +              +        E    + ++  P     +   G   + N +
Sbjct: 394 ALSHAFNKMVVDLKQSFSQLNTQMEEIRLLEERYRDLIENSPEMIHQLDKTGRFVHVNET 453

Query: 348 FLLLTKYKSVDDI---------EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398
            L    Y  V+ +                        +   +    +      T I    
Sbjct: 454 ELEKLGYTLVEMLAMHLWDILPPEKKADVLAYVNRLHTQPRSTIETVFLTRHGTPIDVEI 513

Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN--KRKMEIEVMQLCS 456
               +  +    L  T        +      Q       ++  +    +++     +   
Sbjct: 514 HSTALINSETGDLVYTRAFVRDITERKVLQRQIDRYTTQLEQEVADQTQQLSESEKRYRV 573

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           + + ++D I ++   G+I + N    ++ GY  + +L +     +  +    +   L   
Sbjct: 574 LFDRSADSIFMVEPSGVIAAVNEREQEMLGYAPDALLSQSLLTLVPDSYKETVMRLLETA 633

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHA 574
           +S +  +            + L ++ + + ++   S       + DI+E K  + +L   
Sbjct: 634 VSNE-EKVPATELEVFDARQTLRAVEMDVIRVGQGSTLSIMAQLRDITERKLLEEQLQRH 692

Query: 575 KKIAEKESSHKS 586
           ++  E++   ++
Sbjct: 693 REELEEKVQART 704



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 20/149 (13%), Positives = 56/149 (37%), Gaps = 4/149 (2%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            ++ +   +   ++E + + I  +++ G  +  N    +  GY + ++L       L   
Sbjct: 418 EEIRLLEERYRDLIENSPEMIHQLDKTGRFVHVNETELEKLGYTLVEMLAMHLWDILPPE 477

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS---LTMHDI 561
             + +  Y+  + +   R T+E + L        + +         +         + DI
Sbjct: 478 KKADVLAYVNRLHTQ-PRSTIETVFLTRHGTPIDVEIHSTALINSETGDLVYTRAFVRDI 536

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
           +E K  + ++       E+E + ++  L+
Sbjct: 537 TERKVLQRQIDRYTTQLEQEVADQTQQLS 565



 Score = 70.4 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 46/414 (11%), Positives = 108/414 (26%), Gaps = 59/414 (14%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
            +D  G    ++E   + +G    +M+ M L D+             + L  Q     +T
Sbjct: 440 QLDKTGRFVHVNETELEKLGYTLVEMLAMHLWDILPPEKKADVLAYVNRLHTQPRSTIET 499

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR--------ALGKR 199
                 GT + V I  +   I S   +    R F  V         +         L + 
Sbjct: 500 VFLTRHGTPIDVEIH-STALINSETGDLVYTRAF--VRDITERKVLQRQIDRYTTQLEQE 556

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK-------------------- 239
           +  +   L E +K +  +     D      P   +   N+                    
Sbjct: 557 VADQTQQLSESEKRYRVLFDRSADSIFMVEPSGVIAAVNEREQEMLGYAPDALLSQSLLT 616

Query: 240 ---------VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLN------QYT 284
                    V  L E     ++ +   +  +  + ++    + D   +            
Sbjct: 617 LVPDSYKETVMRLLETAVSNEEKVPATELEVFDARQTLRAVEMDVIRVGQGSTLSIMAQL 676

Query: 285 KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFY 343
           +      L     +           + +    E +      ++      +         Y
Sbjct: 677 RDITERKLLEEQLQRHREELEEKVQARTLEIQETQKYLESLLENANDVIYTLDLDQRFTY 736

Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403
            N   +    Y+  D +         L A +         + L       +   ++   +
Sbjct: 737 VNNK-VENWGYRKEDLLGRPFLT---LLAKRHRGRRLKDILELDVKQEYEVEVISQSGEL 792

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
           +       ++        N+    +   GI  +  D ++ +++      +L S+
Sbjct: 793 R-------SVLVSVSPLENERYSVIGVLGIARDITDRKLMEQQFR-NTERLASV 838



 Score = 38.9 bits (89), Expect = 4.2,   Method: Composition-based stats.
 Identities = 26/302 (8%), Positives = 67/302 (22%), Gaps = 26/302 (8%)

Query: 54  FTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM 113
            T   QE    T  L            R+    + ++  G +  ++E   + +G     +
Sbjct: 550 TTQLEQEVADQTQQLSESEKRYRVLFDRSADSIFMVEPSGVIAAVNEREQEMLGYAPDAL 609

Query: 114 IGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPI-YSRN 172
           +   L  +           +  LL+       +  +   E         L A+ +   R 
Sbjct: 610 LSQSLLTLVP---DSYKETVMRLLET--AVSNEEKVPATELEVFDARQTLRAVEMDVIRV 664

Query: 173 REFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH------------------LHEIKKGH 214
            + S       +             +R  ++                     L E     
Sbjct: 665 GQGSTLSIMAQLRDITERKLLEEQLQRHREELEEKVQARTLEIQETQKYLESLLENANDV 724

Query: 215 SSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQED 274
                         +   +   + +      +        +  +   +   +     + +
Sbjct: 725 IYTLDLDQRFTYVNNKVENWGYRKEDLLGRPFLTLLAKRHRGRRLKDILELDVKQEYEVE 784

Query: 275 FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET--VDKCPIP 332
             + +    +       L+N        L      +     ++    T     V K    
Sbjct: 785 VISQSGELRSVLVSVSPLENERYSVIGVLGIARDITDRKLMEQQFRNTERLASVGKLAAG 844

Query: 333 FF 334
             
Sbjct: 845 VA 846


>gi|116749638|ref|YP_846325.1| multi-sensor hybrid histidine kinase [Syntrophobacter fumaroxidans
           MPOB]
 gi|116698702|gb|ABK17890.1| multi-sensor hybrid histidine kinase [Syntrophobacter fumaroxidans
           MPOB]
          Length = 823

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 79/248 (31%), Positives = 136/248 (54%), Gaps = 4/248 (1%)

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
                +    +S+F+A +SHE+RTPL +IIGFS ++   R G L     + YA  I+R+G
Sbjct: 309 NMELLEADHLRSEFVANMSHELRTPLNSIIGFSGLLMKNRGGNLV-ATDLSYAEKINRNG 367

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
             +L+++ND+LD+SKIE+G+M L   P  +D    E + +++  A+E+ + +    A  I
Sbjct: 368 KHLLNLINDILDLSKIEAGRMELQIGPTRIDVLTKEVVDMLRPQADERNLSLTFETAGEI 427

Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELE 754
           P    D   +K++ +N+L NAI FT  GG + +     S   + + V D+G+G+   +LE
Sbjct: 428 PMFETDGEKLKRVLINLLGNAIKFTHKGG-VKVRLISQSGHRLNIEVNDSGIGIPQDKLE 486

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
              +PF Q+ +S      GTGLGL + +++V+   G+  + S P +G+   +  PL   +
Sbjct: 487 TIFQPFRQVDSSTSREYGGTGLGLTITRSIVEMLRGEISVSSKPGEGSTFTVSLPLGGDA 546

Query: 815 --HPHDCI 820
              P   +
Sbjct: 547 ARQPAPAV 554


>gi|254744763|ref|ZP_05202441.1| sporulation kinase A [Bacillus anthracis str. Kruger B]
          Length = 478

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 96/503 (19%), Positives = 194/503 (38%), Gaps = 39/503 (7%)

Query: 321 LTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
           +     +  P     +   G + + NPS   +  Y S++ +E     S L       + +
Sbjct: 1   MYASLFEHNPDSIISLNLEGVILHINPSAEKILGYTSLE-LEQKNITSIL-------EAH 52

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
             + V+    +         + +I       L +         Q         ++P +  
Sbjct: 53  ISEQVLQNIKNTETDNQQEYILSICHKNGFLLDVVTKLVPIFVQNRLTGVYAIMKPLEKS 112

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
            RI +  ++    +L +++ +    +   + EG  L  N      F +       K  + 
Sbjct: 113 ERI-ENMLKESEKRLRTLVNSMPAFVIFKDHEGRWLEANDYALSCFNFHHVPYRGKKDSE 171

Query: 500 FLEQNTPSVMN----HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-- 553
            ++ N            + E+     RQ L        +++  L L +    L       
Sbjct: 172 LIQYNEAYREAFLHCEEVDELAWQ-QRQILHGEEFIIHRDDSDLILSMSKVPLYHPDGSR 230

Query: 554 --YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
               +   D++E K+ +  L  ++K+A           A ++HEIR PLT++ GF  ++ 
Sbjct: 231 KGLIVMGRDVTELKETEKLLRKSEKLAVV-----GQLTAGIAHEIRNPLTSLKGFLTLLL 285

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
                P  N  +  Y + +    + +  I +  + +SK +     L  +  ++   + E 
Sbjct: 286 -----PEINEEHKWYIDVMLSEISQMESITSQFMAMSKPQ----VLSIKTCNIQTLIEEV 336

Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
           ++ +   A    + I     +    I  D   +KQ+ +NIL NAI   P+GG I I T  
Sbjct: 337 VTFILPTAIMHSVHIIMDHFDYAHDIQCDGNQLKQVFINILKNAIEAMPNGGNIFIQTKP 396

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
             +  +++R+ D G G+    + +  +PF        ++ +GTGLGL +   +++ + GK
Sbjct: 397 LEDTFILIRIIDEGCGIPEDRISRLGEPFY------SLKEKGTGLGLMMCYKIIEEHHGK 450

Query: 792 FYIFSTPAKGTLIEIIFPLYDTS 814
            +I S   KGT+++I  PL  + 
Sbjct: 451 LHISSELNKGTIVDIQLPLSSSH 473



 Score = 38.9 bits (89), Expect = 4.2,   Method: Composition-based stats.
 Identities = 15/149 (10%), Positives = 43/149 (28%), Gaps = 15/149 (10%)

Query: 64  NTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPK--------TIGNYAFKMIG 115
                +SE               +  D  G   E ++              G    ++I 
Sbjct: 116 ENMLKESEKRLRTLVNSMPAFVIFK-DHEGRWLEANDYALSCFNFHHVPYRGKKDSELI- 173

Query: 116 MRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREF 175
            +  +      +          +++   +G+  +   + ++L +   ++ +P+Y  +   
Sbjct: 174 -QYNEAYREAFLHCEEVDELAWQQRQILHGEEFIIHRDDSDLILS--MSKVPLYHPDGSR 230

Query: 176 SGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            G    G         +   L ++ +K  
Sbjct: 231 KGLIVMG--RDVTELKETEKLLRKSEKLA 257


>gi|229514185|ref|ZP_04403646.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae TMA
           21]
 gi|229348165|gb|EEO13123.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae TMA
           21]
          Length = 857

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 82/377 (21%), Positives = 161/377 (42%), Gaps = 21/377 (5%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           R++  +  Q   +         + N  G ++  N +    F              FL + 
Sbjct: 350 RRLANKEKQFEDLFNFALSPTMLWNTSGRLIRMNPSAQIQFLREDAQ------NHFLFEI 403

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT-MHDISE 563
               +   +T     +    +         + ++    +    +       +T   DI+ 
Sbjct: 404 LERQLLPTITNAAQGNNPSEVTTEV-----DGRVYRWNLSPIMVEGQIISIITQGQDITT 458

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + + +   A++ AE+ +  +++FLA++SHE+RTPL  ++G S+++K        N   
Sbjct: 459 IAEAEKQSQAARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRTPL----NDEQ 514

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            E+   +  SG  +L ++ND+LD S++E GK  +      L E V     + +   NEK 
Sbjct: 515 REHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKNEFRLKELVCAIDRIYRPLCNEKG 574

Query: 684 ILIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EVIL 739
           + +  +        + +D   + QI  N+L+NAI FT  G  I +       +   ++++
Sbjct: 575 LELVVNSNITTAAIVRSDQIRINQILFNLLNNAIKFTHQGS-IRVELQLIEGDPLAQLVI 633

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
           +V DTG+G+   +L    +PF Q  ++      G+GLGL +  ++V+   G+ ++ S   
Sbjct: 634 QVVDTGIGIREQDLTVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHVSSEYG 693

Query: 800 KGTLIEIIFPLYDTSHP 816
            GT  EI  P+     P
Sbjct: 694 IGTRFEIQLPIELVEKP 710


>gi|221211947|ref|ZP_03584925.1| response regulator/sensor histidine kinase [Burkholderia
           multivorans CGD1]
 gi|221168032|gb|EEE00501.1| response regulator/sensor histidine kinase [Burkholderia
           multivorans CGD1]
          Length = 1007

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 109/673 (16%), Positives = 213/673 (31%), Gaps = 35/673 (5%)

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
           W        V   L A    +  R+    R   +  +             L ++   L +
Sbjct: 96  WDDAARPSAVLAALFASRERASFRDVRDPRLSYVGQIAHDAGSRHLALLALSERL--LGD 153

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
               H +     +     +       +    +          DV++        +     
Sbjct: 154 GVWRHQTTAGPDHVYIVGRDGRFAALLMRTRTDAQSSPRDSLDVVQALSQTWPDAMNEVR 213

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
                   +             + +        +   +    S        +    V   
Sbjct: 214 DGDAHPERVRDGAIWLPPRPDPVTSE-----PMVRVASWVFDSRNAPVALVVYATRVSNL 268

Query: 330 PIPFFVYSHGNLFYANPS----FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
                    G +     +     L       +D       L+      +  D +      
Sbjct: 269 QRALGDGRAGRMLAIVDAQRHVLLQSAHASGIDATRAIESLAAFAKPARGIDAHRFGHDW 328

Query: 386 LYRSDRTCIAAS----ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
           L R                  +  +    LA   +                     V + 
Sbjct: 329 LMRDRIPGTDWELVDIVAARAVLADLGPRLASIALATALGLALLAGGLLLLNRRILVPSH 388

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
               +++       +++     G+A+I+   G +L  N  + +       + L       
Sbjct: 389 ARAMRLKDSEQLSRTLIRTAPVGLALIDAANGAVLLCNETMDRYERATPREPLSVRLWRA 448

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
              +                L + +          +  L + +   K   +     T+ D
Sbjct: 449 FRDSH------------GTSLSREIALEGAAGPAGDTHLLVNVTRVKYRGADALLGTVVD 496

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I+  K  +  L  A++ A++ +  KS FLA +SHEIRTPL A+IG  E++          
Sbjct: 497 ITARKLTEQSLDAARRAADQANRAKSVFLATMSHEIRTPLNAVIGNLELMSRDTL----P 552

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
               +       + + +L ++ND+LD+S++E+G++ +   P      + +     +  A 
Sbjct: 553 DVQRKRLATAHSASSSLLHVLNDVLDLSRVEAGQLRIDAVPFDCAALLHDVTESFRPLAA 612

Query: 681 EKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN--EEV 737
            K++ +    A  + R    D   ++QI  N+LSNAI FT +GG  + +        +EV
Sbjct: 613 AKQLSLTCDVAPTLARYRIGDPVRIRQIVSNLLSNAIKFTDAGGVAVTADAVREGRLDEV 672

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
            +RV DTG+G+ +       + + Q  +S   R  GTGLGL L + +V A  G   + S 
Sbjct: 673 AVRVTDTGIGIPHAAQAAIFELYRQADDSIHRRYGGTGLGLALCRRLVAAMDGDLAVDSE 732

Query: 798 PAKGTLIEIIFPL 810
           P  G+   ++ PL
Sbjct: 733 PGIGSTFSVVVPL 745


>gi|218780262|ref|YP_002431580.1| multi-sensor signal transduction histidine kinase
           [Desulfatibacillum alkenivorans AK-01]
 gi|218761646|gb|ACL04112.1| multi-sensor signal transduction histidine kinase
           [Desulfatibacillum alkenivorans AK-01]
          Length = 504

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 83/401 (20%), Positives = 166/401 (41%), Gaps = 25/401 (6%)

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476
                    +   +      +   +     +  E  ++ +I+EA  +G+ + N+EG ++ 
Sbjct: 116 RIVAGRAIEKLRLRQETLELEAKRQRTLADLGKEQSRVRTIIEALPNGMVVTNQEGQVVL 175

Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
            N A  +  G P +    K    ++  +    +   +++    D  Q           E+
Sbjct: 176 MNPAFLRHLGLPPDTEPGKSMNEYVPDDGVVNLAMEISQGKFSDADQAPAVEFAL--SED 233

Query: 537 KLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
           K L  R               + ++D++  K                   KS+F+A+VSH
Sbjct: 234 KYLLARGRPVLSEDGECLGAVVVLNDVTAMKML--------------DRLKSEFVAKVSH 279

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE--YANYIDRSGNLVLDIVNDLLDISKIES 652
           E+R+PL  I    E +     G +      E    +        ++D++ DLLD+S+IE 
Sbjct: 280 ELRSPLATIR---EQLALVIQGVVDEATEQEQYLLSRAKDKTQSLIDLIGDLLDVSRIEC 336

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN-IPRILADLRSVKQIALNI 711
           G +     P+ ++E +S  +  +Q  A  K   +  +   + +P++  D  +++ +  N+
Sbjct: 337 GNVAQQQVPLQVEELLSSIVDFMQAKAKAKNQELGVTLPASPLPKMRVDPMALESVFGNL 396

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           ++NAI++TP GG + +       + + + V DTG G+    L      F ++ N +    
Sbjct: 397 VANAINYTPEGGSVTVEVG-GDEKAIQVTVADTGFGIEEKHLANIFDKFYRVKNDKTRFI 455

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
            GTGLGL + K ++D+      + S   KG+   ++ PL D
Sbjct: 456 TGTGLGLSIVKGILDSMGASISVESEVGKGSRFTVLLPLED 496


>gi|148975720|ref|ZP_01812551.1| signal transduction histidine kinase [Vibrionales bacterium SWAT-3]
 gi|145964793|gb|EDK30045.1| signal transduction histidine kinase [Vibrionales bacterium SWAT-3]
          Length = 856

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 92/381 (24%), Positives = 169/381 (44%), Gaps = 27/381 (7%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS-KLFGYPVEDILRKPFTVFLEQ 503
            ++  +  +   +       I + + +G ++  N A    LF    ED          E 
Sbjct: 349 ERLSEQNQKFQDLFNFAHSPILVWSEKGDLIQMNPAARMALFD---EDDNYGAVAHEFEH 405

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDIS 562
                +   +       +   +          EK+    +   ++    +   +   DI+
Sbjct: 406 RMLPNIQMVVQGAKLTGINVPI---------GEKVFRWNMSAIRVEHGITGVVVQGQDIT 456

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  + + +   A++ AE  ++ ++DFLA++SHEIRTPL  I+G S+++K      + +  
Sbjct: 457 KLVEAERQADRAREEAEHLANVRADFLAKMSHEIRTPLNGILGVSQLLKR----SVHSED 512

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             E  + +  S   +L ++ND+LD SKIE G+ N+  +   L E ++   S+ +    +K
Sbjct: 513 NREQVDVLCNSAEHLLAVLNDILDFSKIEQGQFNIQKKDFRLGELINTLDSIYRPLCEDK 572

Query: 683 RILIRT--SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-----SNE 735
            +         ++I  I  D   + QI  N+LSNA+ FT  GG I +S         +  
Sbjct: 573 SVTFSIVNHLVDDI-EINTDQVRLNQIMFNLLSNALKFTHQGG-ISVSFELESIFNTNKA 630

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            +I+RV+DTG+G+   +++   +PF Q   +      GTGLGL + K +VD   G   + 
Sbjct: 631 SLIVRVKDTGIGIDGSKIDAVFEPFVQAEETTTREYGGTGLGLTIVKNLVDMLEGDIQVR 690

Query: 796 STPAKGTLIEIIFPLYDTSHP 816
           S  A+G+   I  P+   S P
Sbjct: 691 SAKAQGSEFIIEIPVELNSKP 711


>gi|253565691|ref|ZP_04843146.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|251945970|gb|EES86377.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
          Length = 812

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 95/517 (18%), Positives = 193/517 (37%), Gaps = 39/517 (7%)

Query: 313 AYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
                 E L  +     P+   +Y+  G L   N   L +        I        L +
Sbjct: 311 ERVMHSEKLFHDIFTNIPVGLELYNKEGMLLDCNNRNLEIFGVGDKSRIIGLN----LFE 366

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW----NRENSLAMTFIPFEKANQFPEN 427
           +P ++ +       L                 +      R   + +        +     
Sbjct: 367 SPNMTRDIHES---LRAGRPGTFHLKYDFDEERRLFQSERRGVMDLDIRSLMLYDAEDNL 423

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG---IAIINREGIILSTNRAVSKL 484
                +  ++ +      K+         I + +  G   I +++  G      R   + 
Sbjct: 424 SNYLLVNIDNTERNNALSKVHDFENFFSIISDYSKVGYAKINLLDHTG---FAVRQWYRN 480

Query: 485 FGYPVEDILRKPFTVF--LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE--KLLS 540
            G   +  L     +F  +  +    +  +  +  +    +  +        +   +   
Sbjct: 481 LGESHDTPLADIIGIFSHMHPDDRKSVLDFYEKAKA-GTERFFDGDLRIRPADGSDRWNW 539

Query: 541 LR----IIIKKLPFSS-CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
           +     +   + P          +DI+  K+ + +L  A+  AE+ +  KS FLA +SHE
Sbjct: 540 IHKSSMVTAYQSPNPRLELVEVNYDITVQKETEAELRAARDKAEESNRLKSAFLANISHE 599

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           IRTPL AI+GFS+++              E+   I ++  L+L + +D++D+SKI++G  
Sbjct: 600 IRTPLNAIVGFSDLLM----TVDDPAEQEEFRRTIQKNNTLLLQLFSDIIDLSKIDAGSF 655

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSN 714
               +PV L +  +  +  ++    E  + ++    + +     AD   + Q+  N +SN
Sbjct: 656 EYMPKPVCLYQFCAMMVQKMRNKVPE-GVELQIDEDSPLDAWFSADSGYLNQVVTNFMSN 714

Query: 715 AIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           AI FT  G  I +     + +++ + V DTG+G++    E     F ++ +      +GT
Sbjct: 715 AIKFTHRG-TITVGYRIDARQQLEMFVEDTGIGISIENQEAVFDRFMKVDSF----VQGT 769

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
           GLGLPL K++++   G   + S   KG+      P +
Sbjct: 770 GLGLPLCKSIIEKMGGHIGVISELGKGSRFWFTLPAF 806



 Score = 46.2 bits (108), Expect = 0.024,   Method: Composition-based stats.
 Identities = 43/302 (14%), Positives = 87/302 (28%), Gaps = 48/302 (15%)

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
           +L++P      A++   +   + T     A L  ++           I         E+ 
Sbjct: 233 ILNSPDELPPLAVRDREVLAENGTNSMMLAPL--MREEGVWGYMGIDIVDGYRKWNSEDY 290

Query: 429 PQNGIEPED----VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
                        ++ R+ K ++         I      G+ + N+EG++L  N    ++
Sbjct: 291 QWFSSLANIISICMELRMIKERVMHSEKLFHDIFTNIPVGLELYNKEGMLLDCNNRNLEI 350

Query: 485 FGY-PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL------EKITLGSTKEEK 537
           FG      I+           +P++       + +             E+  L  ++   
Sbjct: 351 FGVGDKSRIIGLNLF-----ESPNMTRDIHESLRAGRPGTFHLKYDFDEERRLFQSERRG 405

Query: 538 LLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESS------HKSD 587
           ++ L I    L  +      Y L   D +E     +K+   +      S        K +
Sbjct: 406 VMDLDIRSLMLYDAEDNLSNYLLVNIDNTERNNALSKVHDFENFFSIISDYSKVGYAKIN 465

Query: 588 FLARV-------------SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
            L                SH+  TPL  IIG    +      P      +++        
Sbjct: 466 LLDHTGFAVRQWYRNLGESHD--TPLADIIGIFSHM-----HPDDRKSVLDFYEKAKAGT 518

Query: 635 NL 636
             
Sbjct: 519 ER 520


>gi|75910897|ref|YP_325193.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
 gi|75704622|gb|ABA24298.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
          Length = 1274

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 81/264 (30%), Positives = 147/264 (55%), Gaps = 14/264 (5%)

Query: 559  HDISEWKQEK-------NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
             +++E +Q +        +L+ + +   + +  K +FLA +SHE+RTPL AI+G +E ++
Sbjct: 854  QELAERQQAELKLTQSNQQLAISNQELARATRLKDEFLANMSHELRTPLNAILGMTEGLQ 913

Query: 612  NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
               FG + N +  +    I+RS + +LD++ND+LD++KIE+G++ L    +S+      +
Sbjct: 914  EGVFGMI-NDKQFKALETIERSSSHLLDLINDILDVAKIEAGQIKLDCTAISVAALCQSS 972

Query: 672  ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
            +  ++  A +KRI +      N+P +  D R ++Q+ +N+L+NA+ FTP  G+I +  T 
Sbjct: 973  LVFIKQQALQKRIQVEIKIPLNLPDLFVDERRIRQVLINLLNNAVKFTPETGRISLEVTQ 1032

Query: 732  ------TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
                  T    + + V DTG+G+    + K  +PF QI ++   + EGTGLGL L K +V
Sbjct: 1033 VSPDISTVQNFLQIAVIDTGIGIMQENINKLFQPFIQIDSALNRQYEGTGLGLALVKKIV 1092

Query: 786  DANMGKFYIFSTPAKGTLIEIIFP 809
            + + G+  + S    G+   I  P
Sbjct: 1093 ELHGGRVGLTSELGVGSCFTIELP 1116



 Score = 55.0 bits (131), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/228 (8%), Positives = 63/228 (27%), Gaps = 14/228 (6%)

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
             + +     + + L +     +A  A        +     +         Q  E     
Sbjct: 467 ESQHAREWQTEEIELLQGLSVHLAI-AIQQATTHQKLQEQLIALQEGSDRLQESEQRYIA 525

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSI-------LEATSDGIAIINREGIILSTNRAVSKL 484
             +  +        +++    QL  I       L++ + G    +     +  +  + +L
Sbjct: 526 LNQNLEAKVEERTAELQAREAQLQKISERLALSLKSAAIGCWDWDIGENTIFWDERMYEL 585

Query: 485 FGY---PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
           +G        ++   +   L  +  +     + + +        E   +        +  
Sbjct: 586 YGVTKTTDSRLVYDTWANGLHPDDRTNTEILVQQAVLGQAEYDTEFRVIHPDGSIHFIKA 645

Query: 542 RIIIKKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
             ++ +    +         DIS+ K+ + ++   +   EK     + 
Sbjct: 646 YGVVVRDAEGNPQKMIGVHFDISDRKKAE-EIIRQQAEREKLLREITQ 692


>gi|126460995|ref|YP_001042109.1| multi-sensor hybrid histidine kinase [Rhodobacter sphaeroides ATCC
           17029]
 gi|126102659|gb|ABN75337.1| multi-sensor hybrid histidine kinase [Rhodobacter sphaeroides ATCC
           17029]
          Length = 855

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 107/592 (18%), Positives = 199/592 (33%), Gaps = 41/592 (6%)

Query: 241 SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQ-YTKKQYFGTLQNNSKES 299
           +            +             +   +E F  ++       +     L  N  + 
Sbjct: 15  APRLWQRLRLPAAVLVMLAGATAIIGLANDARERFQQLDYIVTDGVQTRLSDLDGNLSQF 74

Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDD 359
              L         A          E + +                     +L      + 
Sbjct: 75  ASALGVTGSSPSPAAVRTSLRQLQEGLAQLDTAM------------AEAGVLWDPAYGEG 122

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVM--LYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
           I               + +  +   M  L R+      A A L         S  +    
Sbjct: 123 IARLRQFERDRADLIAAPDATVTAAMPGLTRALPQLEQAVAELSATASADRESRNLENRA 182

Query: 418 FEKANQFPENMPQNGIE-----------PEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
              ++         G+               + +R           +L +I   ++D I 
Sbjct: 183 IIGSSIMRLVALTIGLVLMLSAGSFQLLRLYLRSREQAEAAGRASARLEAIFRISADAIL 242

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT-----PSVMNHYLTEILSLDL 521
           + +    ++  NRA   +FG+  E +        L            +   L       +
Sbjct: 243 VTDWSARVIDCNRAALAIFGHQRERLAGADAMELLFPAELQGRQRMRVVDALRN-SDPRI 301

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579
              L         +     + + +   ++         M DIS  ++ + +L+ A+  A 
Sbjct: 302 DGPLRLELEAVHADGSRFPVEVSLAAARVEGEDIIVALMRDISARRRAERELTEARDRAL 361

Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639
                K+DFLA +SHE+RTPL  + G  E++         +PR  E  + +  S  ++LD
Sbjct: 362 AGEQTKADFLAVMSHEMRTPLNGLAGSLELLAQTPL----DPRQRELVSVLRASAEILLD 417

Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS-FANNIPRIL 698
            VN +LDI++ E+           LD  + + I+    +A      I        +  + 
Sbjct: 418 HVNSVLDIARSEARPSVAEMVDFDLDRLIEDCIANQSGFAAVVGNRIDHRPLTGPVGILN 477

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
            + + ++Q+ LN+L+NA+ FT   G+II+ +      +V +RV DTG+G+    LEK   
Sbjct: 478 GEPQRLRQVLLNLLNNAVKFT-RNGRIIVESEVQ-GADVEIRVLDTGIGIAPENLEKVFD 535

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            F  +  S + R  GTGLGL +A+ +     G   + STP +G+   +  PL
Sbjct: 536 DFVTLDASYERRSGGTGLGLGIARRLARIMGGDLTVQSTPGRGSRFTLRLPL 587



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/323 (8%), Positives = 63/323 (19%), Gaps = 40/323 (12%)

Query: 168 IYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ 227
           +   +   S F     V  +           R  ++     +     + V  +       
Sbjct: 64  LSDLDGNLSQFASALGVTGSSPSPAAVRTSLRQLQEGLAQLDTAMAEAGVLWDPAYGEGI 123

Query: 228 QS------------PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDF 275
                           P   +   +  LT      +  +           ES   E    
Sbjct: 124 ARLRQFERDRADLIAAPDATVTAAMPGLTRALPQLEQAVAELSATASADRESRNLENRAI 183

Query: 276 HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV 335
              ++ +         L  ++        +      +                      V
Sbjct: 184 IGSSIMRLVALTIGLVLMLSAGSFQLLRLYLRSREQAEAAGRASARLEAIFRISADAILV 243

Query: 336 YS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY------- 387
                 +   N + L +  ++  + +  A  +  L  A             L        
Sbjct: 244 TDWSARVIDCNRAALAIFGHQR-ERLAGADAMELLFPAELQGRQRMRVVDALRNSDPRID 302

Query: 388 ----------RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
                      +D +       L   +   E+ +           +          E E 
Sbjct: 303 GPLRLELEAVHADGSRFPVEVSLAAARVEGEDIIVALMRDISARRRA---------EREL 353

Query: 438 VDTRINKRKMEIEVMQLCSILEA 460
            + R      E       +++  
Sbjct: 354 TEARDRALAGEQTKADFLAVMSH 376



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/265 (6%), Positives = 56/265 (21%), Gaps = 15/265 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID--PNNHIGDLLKRQNTWYGK 146
            D    + + +       G+   ++ G    ++     +       + D L+  +     
Sbjct: 244 TDWSARVIDCNRAALAIFGHQRERLAGADAMELLFPAELQGRQRMRVVDALRNSDPRIDG 303

Query: 147 TTLWPIE---GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                +E         P++++         +        ++                  +
Sbjct: 304 PLRLELEAVHADGSRFPVEVSLAAARVEGEDII----VALMRDISARRRAERELTEARDR 359

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE------ 257
                + K    +V   +              +        +           E      
Sbjct: 360 ALAGEQTKADFLAVMSHEMRTPLNGLAGSLELLAQTPLDPRQRELVSVLRASAEILLDHV 419

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
              L  +   + P   +    +L++  +          +              +     E
Sbjct: 420 NSVLDIARSEARPSVAEMVDFDLDRLIEDCIANQSGFAAVVGNRIDHRPLTGPVGILNGE 479

Query: 318 GENLTPETVDKCPIPFFVYSHGNLF 342
            + L    ++          +G + 
Sbjct: 480 PQRLRQVLLNLLNNAVKFTRNGRII 504


>gi|302870793|ref|YP_003839429.1| multi-sensor signal transduction histidine kinase
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302573652|gb|ADL41443.1| multi-sensor signal transduction histidine kinase
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 566

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 81/405 (20%), Positives = 163/405 (40%), Gaps = 60/405 (14%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
            E ++Q       +       + +    ++E E  +L  IL+  SDG+  +N +  I+  
Sbjct: 212 IEVSSQDEIGKLASAFRTMATNVKKYISELEFEKQKLERILQNMSDGVLAVNSKNEIIHI 271

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
           N +  K                         +  +L  I + + R   + I      +  
Sbjct: 272 NESAKKFL--------------------KGDVKKFLEYIQNEENRSVTQHIYEV---DGW 308

Query: 538 LLSLRIII-KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
            L +           +     +HDI++  +                  +  F+A VSHE+
Sbjct: 309 TLEVSTAAFIDSYHGNGTIFILHDITQQAKL--------------DQMRKQFVADVSHEL 354

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRY-IEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           RTP+T I  +SE + +     + +     E+ + I +  + +  ++ DLL +S+++SG+ 
Sbjct: 355 RTPITTIKTYSETLLD-----VDDETVKREFLSVIIKECDRMTRLITDLLYLSRLDSGEN 409

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715
            L  E V++ E V      ++++A +K   +  S   N+  I AD   ++Q+ +N+++NA
Sbjct: 410 ILKIEEVNVSELVRFVCEKMRIHAKKKNQKLLCSAEENV-VIEADRDRLEQVLINLINNA 468

Query: 716 IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS-------QQ 768
           + +   GGQI +         V + V D G G+   +L +  + F ++  +         
Sbjct: 469 VVYVQEGGQIEVGLK-KDGSYVKITVDDNGPGIPEDDLPRIFERFYRVDKARSRSLGGSG 527

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
           +          +A  +V A+ GK  + S    GT   +I P+ +T
Sbjct: 528 LGLS-------IADEIVKAHGGKIQVESRVGVGTKFTVILPVKNT 565


>gi|157371505|ref|YP_001479494.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Serratia proteamaculans 568]
 gi|157323269|gb|ABV42366.1| integral membrane sensor hybrid histidine kinase [Serratia
           proteamaculans 568]
          Length = 957

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 97/373 (26%), Positives = 161/373 (43%), Gaps = 29/373 (7%)

Query: 446 KMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           ++E        I+ +   GI I+   +G  + +N                  +   L   
Sbjct: 354 RLEEHEQFNRKIVASAPVGICILRISDGTNILSNELA-------------HNYINLLTHE 400

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564
                   +T I+       ++ +    T     L +  +  +          + D+S  
Sbjct: 401 DR----DRITRIICEQQVNFVDVM----TSNNNNLQISFVHSRYRNEDVAICVLVDVSAR 452

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
            + +  L      AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R  
Sbjct: 453 VKMEESLQEMAAAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKALPQGVDR-- 509

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
              N ++ S  L+L I++D+LD SKIES ++ +     S  E ++           +KR+
Sbjct: 510 -LVNAMNNSSGLLLKIISDILDFSKIESEQLKIEPREFSCLEVITHIAGNYLPLVVKKRL 568

Query: 685 LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
            +      N+P  I  D   ++Q+  N+L+NAI FT +G  II+    T    +   VRD
Sbjct: 569 GLYCFIEQNVPERISGDPVRLQQVLSNLLNNAIKFTDTG-CIILQV-CTRGSYLEFSVRD 626

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TGVG+   E+ +   PF Q+ +  Q   +GTGLGL + + +++   G   + S P  G+L
Sbjct: 627 TGVGIPEKEITRLFDPFFQVGSGVQRHFQGTGLGLAICEKLINMMDGDIAVESEPGLGSL 686

Query: 804 IEIIFPLYDTSHP 816
             I  PL++   P
Sbjct: 687 FTIRIPLFNAQFP 699


>gi|323493551|ref|ZP_08098673.1| hypothetical protein VIBR0546_14560 [Vibrio brasiliensis LMG 20546]
 gi|323312374|gb|EGA65516.1| hypothetical protein VIBR0546_14560 [Vibrio brasiliensis LMG 20546]
          Length = 878

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 87/256 (33%), Positives = 139/256 (54%), Gaps = 7/256 (2%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I + K+ +  L  AK+ AE  S  KS FLA +SHEIRTPL  IIG +E++ +        
Sbjct: 364 IDQQKEYERNLVSAKENAEAASQAKSVFLANMSHEIRTPLNGIIGMAEILSDSHLSS--- 420

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
               E  + ID S + +L ++ND+LD+SKIESG + L    V L E V + ++++   A 
Sbjct: 421 -SQKEILSDIDTSSHALLVLINDILDLSKIESGNLILSVHTVCLREMVFDTVNMLTSKAL 479

Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
           ++ + ++  FA+N+P  I  D    KQ+ +N+LSNA+ FT  G  + +       ++++ 
Sbjct: 480 KQDVELKVDFADNLPDNIEIDDFRFKQVLMNLLSNAVKFTQQGS-VSVELLIE-GQQLVC 537

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V D+GVG++  +L +  KPF Q   S   R  GTGLGL +   +++   G   + STP 
Sbjct: 538 HVADSGVGISPEKLTEIFKPFTQEDGSITRRFGGTGLGLAICNQLIEIMQGTISVSSTPG 597

Query: 800 KGTLIEIIFPLYDTSH 815
            G+   +  PL  +  
Sbjct: 598 VGSRFTVSVPLEVSDQ 613


>gi|172065526|ref|YP_001816238.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ambifaria
           MC40-6]
 gi|171997768|gb|ACB68685.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ambifaria
           MC40-6]
          Length = 730

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 111/574 (19%), Positives = 204/574 (35%), Gaps = 27/574 (4%)

Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
             D+ L +E                     +      ++  G        + + +   + 
Sbjct: 11  ESDEQLVSEVASFAADALRDGGSAIVIARADRLAAVHERLDGLGTAIGAAARDRIFMSSA 70

Query: 309 PSLSAYFDEGENLTPETVDKC--PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
            +L   F +G+   P    +   PI       G   +A    + L    + D    A  L
Sbjct: 71  QALLDSFMDGDLPDPARFRRSIGPIVEAAVRAGRPVHAFGEMVSLL--CAQDRYAGALRL 128

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
             L D        ++     + +  +   +    H    +R    A +    E       
Sbjct: 129 EALWDELIARYRFSLYCGYSHDAFPSAEQSEMFRHVCSLHRRILPAASLRNDENELHLTL 188

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLF 485
            + Q        D    +   E +      +L      IA++   E  I+  N   S L 
Sbjct: 189 ALSQQ-RSRALSDEIRRREDAEQQRN---GVLMHAPLPIALLSGPEHRIVLANHRFSALC 244

Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE--KLLSLRI 543
           G    DI+ +P T  L       +   L          T+ +       +   ++  L  
Sbjct: 245 G--RTDIVDRPLTSVLPGGDTPAIVQALETAREQGCSTTIGEHHDRPEPDGAARVYRLHF 302

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK-------ESSHKSDFLARVSHEI 596
             + L       ++  +++E    + KL  A    ++        +  K  FLA + HE+
Sbjct: 303 NPQPLAEGLGVIVSAVEVTEHVAAREKLVAANAERDRLLGELRDANQAKDQFLAVLGHEL 362

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           R PLT I    E+I+N+      N         I R  + ++ +++DLLD+S+I  GK+ 
Sbjct: 363 RNPLTPISLALELIRNRDGQATPNE-----IAIIQRQLDHMVRLIDDLLDVSRITRGKIT 417

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716
           L  E + L + V  A+ +      ++R  +      +  R   D   + Q+  N+L+NA 
Sbjct: 418 LKKESLRLADIVDRAVEVASPLLEQRRHRLHVDADPDA-RCHGDPVRLSQVVANLLTNAA 476

Query: 717 HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
            +T  GG I +  TH ++   I+ V D G G+    L+   +PF ++    +    G G+
Sbjct: 477 KYTMPGGDITVRATHGADGAAIIEVCDNGAGIPPDRLDSIFEPFYRLDGETKQAHGGLGI 536

Query: 777 GLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFP 809
           GL L +++V+ + G     S  P  G+   I  P
Sbjct: 537 GLALVRSLVNLHGGTVRADSAGPGCGSTFTIALP 570



 Score = 38.5 bits (88), Expect = 4.8,   Method: Composition-based stats.
 Identities = 23/258 (8%), Positives = 65/258 (25%), Gaps = 18/258 (6%)

Query: 82  TVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN 141
            +           +   +       G     ++   L  V           I   L+   
Sbjct: 220 PLPIALLSGPEHRIVLANHRFSALCGRT--DIVDRPLTSVLPGGD---TPAIVQALETAR 274

Query: 142 -----TWYGKTTLWP-IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA 195
                T  G+    P  +G      +     P+               V V         
Sbjct: 275 EQGCSTTIGEHHDRPEPDGAARVYRLHFNPQPLAEGLGVIVSA-----VEVTEHVAAREK 329

Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ-QSPPPHLRMKNKVSSLTEYYAHKDDVL 254
           L     ++   L E++  + + ++    +  + ++P   + +  ++    +  A  +++ 
Sbjct: 330 LVAANAERDRLLGELRDANQAKDQFLAVLGHELRNPLTPISLALELIRNRDGQATPNEIA 389

Query: 255 KTEKYPL-LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
             ++    +      L +        +    +      + + + E    L  +    L  
Sbjct: 390 IIQRQLDHMVRLIDDLLDVSRITRGKITLKKESLRLADIVDRAVEVASPLLEQRRHRLHV 449

Query: 314 YFDEGENLTPETVDKCPI 331
             D       + V    +
Sbjct: 450 DADPDARCHGDPVRLSQV 467


>gi|325274521|ref|ZP_08140585.1| two-component sensor protein [Pseudomonas sp. TJI-51]
 gi|324100338|gb|EGB98120.1| two-component sensor protein [Pseudomonas sp. TJI-51]
          Length = 1212

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 129/677 (19%), Positives = 238/677 (35%), Gaps = 38/677 (5%)

Query: 149 LWPIEGTNLYVPIDLAALPI--YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
            W  +   + V ID  A P+  +  +  F G            D       +   +    
Sbjct: 297 QWLQQHPVMRVAIDDTAAPLSYFDGSGHFRG---------ITADLLELIRLRTGLRFEVQ 347

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
                    +  K+             L  K+   S     +    V + +K    + E+
Sbjct: 348 RASGIADMIARLKDGRADVIAALAIAGLVDKDLQISRPYLESAYVLVSRKDKPAPGSLEQ 407

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
                        ++    + Y       S  +F  ++  N  ++ A      +      
Sbjct: 408 LQGHRIAFTRHSAMHATLPQHYPHIGWVESASAFYSMALLNSGAVDAVITTLIDANHALA 467

Query: 327 DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
              P      S G    AN +    T   S         L+++LD    S +     V+ 
Sbjct: 468 SN-PDLVIRTSVGG-EPANYAMA--TNASSPA-------LASILDKALQSISPEELGVIN 516

Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
            R         ++  + +      LA+  +           +    +  +    +  +R 
Sbjct: 517 NRWRSFGPHEDSKSQSYRR-----LALQVVLATAVLLLLALLWNARLRLQIRQRQRAERA 571

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV--FLEQN 504
           +  ++  + ++L  T   + + +R+G + S N +  +      E ++ K  +   F +  
Sbjct: 572 LNDQLAFMRALLNGTPHPMYVRDRDGRLQSCNYSYLEAVQARSEQVIGKQLSASLFADAE 631

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL-SLRIIIKKLPFSSCYSLTMHDISE 563
               +     ++++      +++      +E  +   +      L           DIS+
Sbjct: 632 QTRQIQADYHKVMAAGSPLIMDRPLRIKGREMTIYHWILPYRDSLGEVQGIIGGWIDISD 691

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            +Q   +L  AK+ A+  +  KS FLA +SHEIRTP+ A+IG  E+   +      +   
Sbjct: 692 RRQLVTELRQAKQQADNANRAKSTFLATISHEIRTPMNAVIGMLELAVKRADQGWVD--- 748

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
                    S   +L ++ D+LDI +IESG ++L  E V L   V     +    A +K 
Sbjct: 749 RSALALAHHSAKDLLGLIGDILDIVRIESGHLSLAPEVVDLAALVESVGRMFDGQARQKG 808

Query: 684 ILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEE---VI 738
           + +            L D    KQ+  N++SNAI FT  G  +I +S    +      + 
Sbjct: 809 LALEVIIEPAARCHALLDPLRFKQVLSNLVSNAIKFTEHGQVRICVSLLDEAPGRPAMLD 868

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           L VRD+G+G+   +LE+   PF Q     Q    GTGLGL + + + D   G   I S  
Sbjct: 869 LEVRDSGIGIHPDDLERLFNPFIQANPHSQGARAGTGLGLAICRNLCDMMGGSLTIKSLE 928

Query: 799 AKGTLIEIIFPLYDTSH 815
             GT + +  PL     
Sbjct: 929 DVGTQVRLKMPLQRVDA 945



 Score = 38.5 bits (88), Expect = 4.6,   Method: Composition-based stats.
 Identities = 24/245 (9%), Positives = 62/245 (25%), Gaps = 15/245 (6%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD----LLKRQNTWY- 144
           D  G L+  +    + +   + ++IG +L   S     +    I      ++   +    
Sbjct: 594 DRDGRLQSCNYSYLEAVQARSEQVIGKQLS-ASLFADAEQTRQIQADYHKVMAAGSPLIM 652

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            +          +Y  I    LP      E  G  G  I              ++  ++ 
Sbjct: 653 DRPLRIKGREMTIYHWI----LPYRDSLGEVQGIIGGWI--DISDRRQLVTELRQAKQQA 706

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
            + +  K    +    +                 +  +   +       L       L  
Sbjct: 707 DNANRAKSTFLATISHEIRTPMNAVIGMLELAVKR--ADQGWVDRSALALAHHSAKDLLG 764

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
               + +     + +L+   +      L  +    F+  + +   +L    +        
Sbjct: 765 LIGDILDIVRIESGHLSLAPEVVDLAALVESVGRMFDGQARQKGLALEVIIEPAARC-HA 823

Query: 325 TVDKC 329
            +D  
Sbjct: 824 LLDPL 828


>gi|284053654|ref|ZP_06383864.1| adenylate/guanylate cyclase [Arthrospira platensis str. Paraca]
          Length = 800

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 71/259 (27%), Positives = 127/259 (49%), Gaps = 9/259 (3%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           + K+    L       +     K++FLA  SHE+RTPL   IG +E + +   G L    
Sbjct: 420 QLKESFVNLEAKNAQLQHLDKLKNEFLANTSHELRTPLNGTIGIAESMLDGATGSLT-EI 478

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             +    I ++G  + +++ND+LD SK+    + L  + + L E V   ++L Q     K
Sbjct: 479 QRKNLLTIAQTGRRLANLINDILDFSKLRHNHIELQLKSIRLRELVEVVLTLSQPLIKYK 538

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST-------THTSNE 735
           ++ I  + ++N+P  +AD   ++QI  N++ NAI FT +G  I IS             E
Sbjct: 539 QLEIINTISDNLPPAMADENRLQQILHNLIGNAIKFTNAG-TIEISAVELDSHGETEKPE 597

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            + + + DTG+G+   ++++  + F Q   S   +  GTGLGL + K +V+ + GK ++ 
Sbjct: 598 WIEITISDTGIGIQEDKIDRVFESFEQADGSTARQYGGTGLGLAVTKKLVELHGGKIWLE 657

Query: 796 STPAKGTLIEIIFPLYDTS 814
           S    G+      P+ ++ 
Sbjct: 658 SEIGVGSRFHFSLPIAESE 676


>gi|268591889|ref|ZP_06126110.1| virulence sensor protein BvgS [Providencia rettgeri DSM 1131]
 gi|291312863|gb|EFE53316.1| virulence sensor protein BvgS [Providencia rettgeri DSM 1131]
          Length = 1205

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 95/387 (24%), Positives = 177/387 (45%), Gaps = 17/387 (4%)

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
           +  E    +  +++++ + + L ++   T   I +I++ G I+++N A    F    E+I
Sbjct: 555 LHREIRLRKYTQKRLQEQAIFLETLYNGTPVPIYVIDKSGTIINSNSAWESFFSPDNENI 614

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSL--DLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
            +   T      +   +   L  +      L    ++  + +   E+++  + +  +   
Sbjct: 615 KQLSLTSQQHPLS--TIYQELHSLFDEPNRLVSPPKRYQIKNRMGERVIVHQAVAYRDNQ 672

Query: 551 SS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
            +      +  DI+E +Q   +LS A++ AE  S  KS+FLA +SHEIRT ++AIIG  E
Sbjct: 673 GNISGLICSWQDITEHEQLLIELSSARQRAEHASQTKSNFLAIMSHEIRTHISAIIGLLE 732

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
           +    +          E       S   ++ ++ D+LD++KIESGK+ L  E V  +E  
Sbjct: 733 LAATNKN---QQDDITESIQIPYESALSLMGLIGDILDMAKIESGKLELVPEWVKSNELA 789

Query: 669 SEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIII 727
           +  + L +  A +K I +        P  I  D+  ++Q+  N+L+NAI FT  G  I +
Sbjct: 790 TPVVRLFEGLAKQKGISLHYHLNAIHPDEIYIDVFRLRQVISNLLNNAIKFTSEG-TIEV 848

Query: 728 STTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
              +         + + + DTG+G+     E    P+ Q  +S   + +GTGLGL + K 
Sbjct: 849 IINYLPQNHEENILRIIISDTGMGIEENRQELIFSPYTQAESS--SKHKGTGLGLAICKQ 906

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFPL 810
           ++    G   ++S    GT   I  P+
Sbjct: 907 LISMMNGTITLYSQLGHGTQFLIDIPV 933


>gi|298505413|gb|ADI84136.1| sensor histidine kinase response regulator, HAMP domain-containing,
           putative heme-binding site [Geobacter sulfurreducens
           KN400]
          Length = 835

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 83/255 (32%), Positives = 127/255 (49%), Gaps = 8/255 (3%)

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
            +L  A+K AE+ S  KSDFLA +SHEIRTP+ AIIG ++++ +               +
Sbjct: 312 AELILARKDAEEASRAKSDFLATMSHEIRTPMNAIIGINQLLVDTPL----TQEQRRLLD 367

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
               +   +L I+ND+LD+S++E+ ++ L  E V L   V     L  + A  K+I +  
Sbjct: 368 DSTTAAESLLIIINDILDLSRVEARRLELFPEAVELRSFVESLRRLFAVQATRKQISLSV 427

Query: 689 SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-EVILRVRDTGV 746
           S     PR +  D   ++QI  N+LSNA+ FTP+GG + +          ++  V DTG+
Sbjct: 428 SVGEGTPRFVWCDPARLRQILTNLLSNALKFTPTGGVVTMVADQAPAGAGLVFTVSDTGI 487

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+   + E   + F Q  +S      GTGLGL + K +V+   G   + S P  G    +
Sbjct: 488 GIDKAKQESIFEMFRQADSSTTRIYGGTGLGLAITKGLVELMGGTIAVESEPGSGATFSV 547

Query: 807 IFPLYDTSHP--HDC 819
             PL     P  HDC
Sbjct: 548 CLPLEPADGPQFHDC 562


>gi|149915177|ref|ZP_01903705.1| sensory box histidine kinase/response regulator [Roseobacter sp.
           AzwK-3b]
 gi|149810898|gb|EDM70737.1| sensory box histidine kinase/response regulator [Roseobacter sp.
           AzwK-3b]
          Length = 851

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 88/373 (23%), Positives = 169/373 (45%), Gaps = 15/373 (4%)

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
            I + +L +IL+ + D I ++  +G I+ TN A   +FG    +  +      L +    
Sbjct: 220 RITLNRLSTILDTSEDAILVVRPDGTIIETNTAARSMFGPDNTETGKSNIYGVLYRQEED 279

Query: 508 VMNHYLTEILSLDLRQTLEK--ITLGSTKEEKL--LSLRIIIKKLPFSSCYSLTMHDISE 563
                +++    D+R+        +   ++  L  + L   +        +   + DIS+
Sbjct: 280 RTLTAISDEPLGDVREGEADSTPLVARRQDGSLAAVELSANVAARSVDEVWVCFIRDISD 339

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
               + ++  A+  A      K+ FL R+SHE+RTPL  I+G  +++ +    P      
Sbjct: 340 RLAAEAEVQAARDKALSNEKAKAHFLGRISHEMRTPLHGILGTLDLMDSTPLSP----EQ 395

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
             Y++ +  SG ++L+ +ND LDI++  +  + L      +++ + +  +     A    
Sbjct: 396 TRYSDIMKSSGQVLLNQINDALDITRSSAEPLPLVETVFDVEQLIEDIATSQGAVAEAHG 455

Query: 684 ILIRTSFANN-IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-----TSNEEV 737
             I     N  +  +L D   V+Q+ LN++SNAI FT   G+I I           +   
Sbjct: 456 NTIDLHVQNAPVGAVLGDRDRVQQVLLNLVSNAIKFT-RNGRISIEAARVGLHGKHDNIF 514

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
            ++V DTG+G+   ++E+    F ++ +S   R EGTGLGL +A+ +V    G   + S 
Sbjct: 515 EIQVSDTGIGIAEDDVERIFDDFVRVISSDGERTEGTGLGLGIARNLVLQMGGDIGVESL 574

Query: 798 PAKGTLIEIIFPL 810
             +G++  +  PL
Sbjct: 575 LGEGSVFWVRLPL 587


>gi|28896392|ref|NP_802742.1| two-component sensor histidine kinase [Streptococcus pyogenes
           SSI-1]
 gi|28811643|dbj|BAC64575.1| putative two-component sensor histidine kinase [Streptococcus
           pyogenes SSI-1]
          Length = 451

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 91/407 (22%), Positives = 166/407 (40%), Gaps = 37/407 (9%)

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDT-RINKRKMEIEVMQLCSILEATSDGIAIINREG 472
            +          E M  +    +  D  R+    +  E  +L SIL   SDG+   +R G
Sbjct: 55  RYTDIIDEKADIELMELSDQLNDLSDVFRLTHENLAQEKNRLASILAYMSDGVLATDRSG 114

Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
            I+  N    K      E+ L+K  T  LE +T       +         +T        
Sbjct: 115 KIIMINETARKQLNLSKEEALKKNITDLLEGDTSYTYRDLV--------SKTPVVTVNSR 166

Query: 533 TKEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
               + +SLR+        S +     + +HD +E ++E+ +                 F
Sbjct: 167 NDMGEFVSLRLRFALNRRESGFISGLVVVLHDTTEQEKEERERRL--------------F 212

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
           ++ VSHE+RTPLT++  + E +     G L       +        N ++ +++DLL++S
Sbjct: 213 VSNVSHELRTPLTSVKSYLEAL---DEGALKEDIAPSFIKVSLDETNRMMRMISDLLNLS 269

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR-----ILIRTSFANNIPRILADLRS 703
           +I++    L  E  +    ++  ++   L  N+         I   +      I  D   
Sbjct: 270 RIDNQVTQLAVEMTNFTAFITSILNRFDLVKNQHTGTGKVYEIVRDYPITSVWIEIDNDK 329

Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
           + Q+  NIL+NAI ++P GG+I +    T   ++I+ + D G+G+   +L      F ++
Sbjct: 330 MTQVIENILNNAIKYSPDGGKITVRMKTTDT-QLIISISDQGLGIPKTDLPLIFDRFYRV 388

Query: 764 PNSQQIRGEGTGLGLPLAKAMV-DANMGKFYIFSTPAKGTLIEIIFP 809
             ++     GTGLGL +AK ++   + G  +  S   KG+   I+ P
Sbjct: 389 DKARSRAQGGTGLGLAIAKEIIKQQHHGFIWAKSDYGKGSTFTIVLP 435


>gi|298249702|ref|ZP_06973506.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297547706|gb|EFH81573.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 520

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 84/531 (15%), Positives = 195/531 (36%), Gaps = 51/531 (9%)

Query: 309 PSLSAYFDEGENLTPETVDKC-PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIA-GGL 366
           P  ++   + E      ++    +   +   G + YA+P+   +  Y   +    A    
Sbjct: 13  PERNSSPTQREARLRALIEHSHEVSLLLDDQGTILYASPALTHVLGYLPEEISGQAMLSW 72

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
              LD  + S+N A       +               +    +   +           P+
Sbjct: 73  VHPLDQSEASENIASLQAHTRQKL-------FTTQRYRHKDGSWRWLELRAV-NKLADPQ 124

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQ-------LCSILEATSDGIAIIN-REGIILSTN 478
                    +    +  + + +  V +       L ++L+    G+ I     G +L +N
Sbjct: 125 VAALICSLRDITTLKDAEIEQQRLVEESDLAHTHLLTVLQQMPAGVMIAEAPSGKLLLSN 184

Query: 479 RAVSKLFGYPVEDI-----LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
             V +++ +   +        +      +    +     L   +        E+      
Sbjct: 185 DQVRQIWHHSFPEANEVDKYDRYKGFHSDGTPYAGYEWPLARSIRQG-ESVREEEITFLR 243

Query: 534 KEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
            +     + +    +  +        +   DISE K+ +                K +F+
Sbjct: 244 GDGTRGIMSVSSAPILNTQNEIIAGVVVFIDISERKRLE--------------QLKDNFI 289

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
           + VSHE++TP+T+I G+++ +  + F      + + +   ++   + + D++N++L IS+
Sbjct: 290 SMVSHELKTPVTSIKGYTQ-LLQKHFQRSDEKQSLYFLAKMNYQLDKLTDLINEILSISQ 348

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709
           ++ G +NL  +   L E V E +   Q      ++ ++         I  D   + Q+  
Sbjct: 349 LDLGMLNLRPKVFDLVEVVREELESQQATTATHKLQLK---GVEKLTITGDCERIGQVIH 405

Query: 710 NILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
           +++SNAI ++P   Q+ I   H+    + + ++D G+G+ +    +  + F ++    + 
Sbjct: 406 HLVSNAIKYSPGRKQVCIEICHSDQAAL-IHIQDYGIGIDSEHFSRLFERFYRVDEPLEQ 464

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820
              G G+GL LA  ++  + G  ++ S   +G+      PL     PH  I
Sbjct: 465 TFPGLGIGLYLAHEIIQRHQGHIWVESQKGQGSTFSFSLPL----QPHTAI 511



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 37/340 (10%), Positives = 91/340 (26%), Gaps = 20/340 (5%)

Query: 56  DQNQESVSNTNYLDSENTFVFDP-IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI 114
           D+ Q+S    N   ++        I  +   +  +D  G +   S  L   +G    ++ 
Sbjct: 6   DKPQDSSPERNSSPTQREARLRALIEHSHEVSLLLDDQGTILYASPALTHVLGYLPEEIS 65

Query: 115 GMRLCDVSDILHIDPNNHIGDLL--KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172
           G  +      L     +     L    +   +        +G+  +  ++L A+   +  
Sbjct: 66  GQAMLSWVHPLDQSEASENIASLQAHTRQKLFTTQRYRHKDGS--WRWLELRAVNKLADP 123

Query: 173 REFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP-- 230
           +          +       D     +RL ++    H               I    S   
Sbjct: 124 QV---AALICSLRDITTLKDAEIEQQRLVEESDLAHTHLLTVLQQMPAGVMIAEAPSGKL 180

Query: 231 PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG 290
                   ++   +   A++ D     K         +  E     +I   +  +++   
Sbjct: 181 LLSNDQVRQIWHHSFPEANEVDKYDRYKGFHSDGTPYAGYEWPLARSIRQGESVREEEIT 240

Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLL 350
            L+ +               +S       N   E +    +   +     L     +F+ 
Sbjct: 241 FLRGDG----------TRGIMSVSSAPILNTQNEIIAGVVVFIDISERKRLEQLKDNFIS 290

Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390
           +  ++    +    G + LL       +       L + +
Sbjct: 291 MVSHELKTPVTSIKGYTQLLQKHFQRSDEKQSLYFLAKMN 330


>gi|165919047|ref|ZP_02219133.1| putative sensor protein gacS [Coxiella burnetii RSA 334]
 gi|165917242|gb|EDR35846.1| putative sensor protein gacS [Coxiella burnetii RSA 334]
          Length = 808

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 91/511 (17%), Positives = 194/511 (37%), Gaps = 40/511 (7%)

Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
            F+   G +  AN   + L + K               D    +   A K  +    ++ 
Sbjct: 25  LFISDEGFIEAANDFAIKLLQLKP----------DQFPDVDFHAFCRANKYSLSRFFNKV 74

Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
                A   T        + +       +           +  +    ++   +++ ++ 
Sbjct: 75  EPPTEALEETYLLKGRQYVILW-KIIRFSQFDDMLKGSLLVGHDRTQLKLVSGELKTKIF 133

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL--RKPFTVFLEQNTPSVMN 510
              +IL      +   ++  + L  N  ++++ G P    +     F    E+       
Sbjct: 134 FYENILSKLPTNVYWKDKNSVYLGCNERLARVMGLPSRKAIEGMTDFDFVWEKEAAKSFI 193

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQ 566
            +  +++   +    E +         ++++      L               DI+E K+
Sbjct: 194 EFDQKVMRSGIPLMTEDVFE--EASGNIVTVLTNKTPLKNEHGETMGVLAISVDITELKK 251

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN--QRFGPLGNPRYI 624
            + +L   ++ AE  +  KS+F+A +SH+IRTP+  ++G  + + N  +      N   +
Sbjct: 252 TQAQLEIQRQKAEAANKAKSEFIANMSHDIRTPIAGMLGMLQDLLNVAEETKTSSNASIL 311

Query: 625 EYANYIDR-------SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
                + R       + + +L + N++L++ ++ESGK +   E   L E +   I L+Q 
Sbjct: 312 NVIETVQRDSELLMGATDELLQLCNEILEVVRLESGKESEQSEAFDLRELIKRTIELLQP 371

Query: 678 YANEKRILIRTSFANNIPRILADLRS--VKQIALNILSNAIHFTPSG-GQIIIST----- 729
            A++K++ +       +P+   D     + +  LN++SNA+ FT +G  ++ +       
Sbjct: 372 VAHQKKLTLACEVDEGVPQ-YLDGIRMYLSRTLLNLISNALKFTENGFVKVKVRLSDKTN 430

Query: 730 ---THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
                     + + V DTG+G+   + +   + F ++  S +   +G GLGL   K  VD
Sbjct: 431 SHYRVGDKATIQIAVEDTGMGIPRDKFDTIFEHFSRLTPSYEGLYKGAGLGLYTVKRYVD 490

Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
           A  G+  + S   KGT   +I P     H  
Sbjct: 491 AMGGEITVDSEVGKGTCFNVIIPFTVADHAE 521


>gi|320352730|ref|YP_004194069.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
           2032]
 gi|320121232|gb|ADW16778.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
           2032]
          Length = 836

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 77/405 (19%), Positives = 147/405 (36%), Gaps = 33/405 (8%)

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
            +     + +I++  +     ++ ++  A  D I +++  G+I   N A   +FGY  E+
Sbjct: 296 AVARRTRELKISEEGLRQSESRMRAVTNAAMDAIVMVDHRGMISYWNPAAESIFGYASEE 355

Query: 492 ILRKPFTVFLEQN-TPSVMNHYLTEILSLDLRQTLEK--ITLGSTKEEK--LLSLRIIIK 546
           +L +     +      +     L           + +        K     ++ L +   
Sbjct: 356 VLHRDLHQLIADQRDRAAHRENLVHFSRTGQGNAVGRMLELRARHKNGHEIVIELSLSAI 415

Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES--SHKSDFLARVSHEIRTPLTAII 604
           ++           DI+E KQ +N+    ++   +             V+H+    L  I+
Sbjct: 416 RVKDEWHAVGIARDITERKQLENERKKLQEQLVQSQKMEAIGTLAGGVAHDFNNMLGVIL 475

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           G++E+   +           +    +  +     DI   LL  ++    K  +  + + L
Sbjct: 476 GYTEMALAR---TATADPLRDCLQRVYDAARRSADITRQLLAFAR----KQTVMPKVLDL 528

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724
           ++ V   + +++     + + +       +  +L D   + QI +N+  NA      GG+
Sbjct: 529 NKTVEGLLGMLERLI-GEDVELLWQPGAAVWPVLMDSSQIDQILVNLCINARDAMAGGGR 587

Query: 725 IIIST--------------THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           III T                   E V+L V D G GM    L    +PF          
Sbjct: 588 IIIRTGNVVRDEGDDSRQAGLVPGEYVLLSVSDNGCGMDQETLSHLFEPFFTTKAM---- 643

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
           G GTGLGL     +V  N G   + S P +GT   + FP Y + H
Sbjct: 644 GRGTGLGLATLYGIVKQNKGMVAVSSEPGQGTTFTMHFPRYRSGH 688



 Score = 64.7 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 50/441 (11%), Positives = 110/441 (24%), Gaps = 23/441 (5%)

Query: 103 PKTIGNYAFKMIGMRLC---DVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYV 159
            +  G    +          DV D +  +          R          +  + + +  
Sbjct: 84  AELTGLEWAEAQRRMAAGEFDVIDTIFRNEKREKLYDFTRPYADIAVPLFFHADISGISG 143

Query: 160 PIDLAALPIYSRNRE--FSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSV 217
           P D     + ++         R  GI  +    +  + +    D +       +      
Sbjct: 144 PEDAVGFMVAAKAGGNVLDVLRRHGITDIVEYPSYEKIVEAARDGRVKVFTVDRPPALYY 203

Query: 218 EKEKYDIFSQQSPPP------HLRMKNKVSSLTEYYAHKDDVLKTEKYPL----LTSEES 267
             +   +   +  PP      H  +K    SL        D++  ++             
Sbjct: 204 LHKMGILHRFRETPPLYNGEFHRAVKKGNLSLLAEVQKGFDLISEQEQRQIDRKWRGLPL 263

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
             PE      +               N           R          + E+      +
Sbjct: 264 LGPEWTRTLLLGAALVCLLVLCLFFWNYGLRKAVARRTRELKISEEGLRQSESRMRAVTN 323

Query: 328 KCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
                   V   G + Y NP+   +  Y S + +     L  L+   +    +    V  
Sbjct: 324 AAMDAIVMVDHRGMISYWNPAAESIFGYASEEVLHR--DLHQLIADQRDRAAHRENLVHF 381

Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
            R+      A  R+  ++   +N   +       A +  +     GI  +  + +  + +
Sbjct: 382 SRT--GQGNAVGRMLELRARHKNGHEIVIELSLSAIRVKDEWHAVGIARDITERKQLENE 439

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
            +    QL  +     + I  +   G+    N  +  + GY    + R      L     
Sbjct: 440 RKKLQEQL--VQSQKMEAIGTL-AGGVAHDFNNMLGVILGYTEMALARTATADPLRDCLQ 496

Query: 507 SVMNHYLTEILSLDLRQTLEK 527
            V +                +
Sbjct: 497 RVYDAARRSADITRQLLAFAR 517



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/252 (11%), Positives = 67/252 (26%), Gaps = 25/252 (9%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG--- 145
           +D  G +   +       G  + +++   L  +      D   H  +L+    T  G   
Sbjct: 332 VDHRGMISYWNPAAESIFGYASEEVLHRDLHQLIA-DQRDRAAHRENLVHFSRTGQGNAV 390

Query: 146 ----KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
               +       G  + + + L+A+ +         +   GI              K+L 
Sbjct: 391 GRMLELRARHKNGHEIVIELSLSAIRVKDE------WHAVGIARDITERKQLENERKKLQ 444

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
           ++     +++   +      +D            M   +   TE    +       +  L
Sbjct: 445 EQLVQSQKMEAIGTLAGGVAHDF---------NNMLGVILGYTEMALARTATADPLRDCL 495

Query: 262 LTSEESSLPEQEDFHTINLNQY--TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
               +++    +    +       T       L    +     L       +   +  G 
Sbjct: 496 QRVYDAARRSADITRQLLAFARKQTVMPKVLDLNKTVEGLLGMLERLIGEDVELLWQPGA 555

Query: 320 NLTPETVDKCPI 331
            + P  +D   I
Sbjct: 556 AVWPVLMDSSQI 567


>gi|297580226|ref|ZP_06942153.1| sensor histidine kinase LuxQ [Vibrio cholerae RC385]
 gi|297535872|gb|EFH74706.1| sensor histidine kinase LuxQ [Vibrio cholerae RC385]
          Length = 857

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 80/377 (21%), Positives = 160/377 (42%), Gaps = 21/377 (5%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           R++  +  Q   +         + N  G ++  N +    F              FL + 
Sbjct: 350 RRLANKEKQFEDLFNFALSPTMLWNTSGRLIRMNPSAQIQFLREDAQ------NHFLFEI 403

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT-MHDISE 563
               +   +      +    +         + ++    +    +       +T   DI+ 
Sbjct: 404 LERQLLPTIINAAQGNNPSDVTTEV-----DGRVYRWNLSPIMVEGQIISIITQGQDITT 458

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + + +   A++ AE+ +  +++FLA++SHE+RTPL  ++G S+++K        N   
Sbjct: 459 IAEAEKQSQAARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRTPL----NDEQ 514

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            E+   +  SG  +L ++ND+LD S++E GK  +      L E V     + +   +EK 
Sbjct: 515 REHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKNEFRLKELVCAIDRIYRPLCHEKG 574

Query: 684 ILIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EVIL 739
           + +  +        + +D   + QI  N+L+NAI FT  G  I +       +   ++++
Sbjct: 575 LELVVNSNITTATIVRSDQIRINQILFNLLNNAIKFTHQGS-IRVELQLIEGDPLAQLVI 633

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
           +V DTG+G+   +L    +PF Q  ++      G+GLGL +  ++V+   G+ ++ S   
Sbjct: 634 QVVDTGIGIREQDLTVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHVSSEYG 693

Query: 800 KGTLIEIIFPLYDTSHP 816
            GT  EI  P+     P
Sbjct: 694 IGTRFEIQLPIELVERP 710


>gi|284038688|ref|YP_003388618.1| PAS/PAC sensor signal transduction histidine kinase [Spirosoma
           linguale DSM 74]
 gi|283817981|gb|ADB39819.1| PAS/PAC sensor signal transduction histidine kinase [Spirosoma
           linguale DSM 74]
          Length = 475

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 94/484 (19%), Positives = 179/484 (36%), Gaps = 34/484 (7%)

Query: 338 HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397
            GN  + NP++  +T Y   +           L      D+       L +      ++ 
Sbjct: 11  DGNCLFLNPAWETITGYSVAE------SQGRQLLDFVREDDRPCIQTYLEQVKTGKQSSD 64

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
             +  +     +   +    ++  N+  +    +G   +  D R  +  +     +   I
Sbjct: 65  HPVIRLSHKMGSFRFVEIFVWQTLNKHQQVNGLSGTLIDITDRRQAEAALRESEERFRQI 124

Query: 458 LEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKP--FTVFLEQNTPSVMNHYLT 514
            +   +   I + RE   L  N A     G   + +      F  F+ +     +     
Sbjct: 125 ADNMEEMFWIRDLRERKFLYINSAYEAFSGLSPQPLFSDENAFLDFVFEPDRDTVLRVFQ 184

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKL 571
           E+      Q+L        ++     LR+    +              DI+   + +  L
Sbjct: 185 EV-----EQSLSYQFRARHRDGSWRWLRVRAFSIQEGGSPSRRIGISADITSILEREQIL 239

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE----VIKNQRFGPLGNPRYIEYA 627
             + K  ++ ++ KS F+A  SHE +TPLTAI    E     +  +   P       ++ 
Sbjct: 240 EVSLKKEQELNALKSQFIATASHEFKTPLTAISSSVELVRYYLNREPQTPFT-AVLTKHL 298

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA-ISLVQLYANEKRILI 686
           N I      + +++ D L +SK++ GK+ + F+ V L   V +  ++      + +++ +
Sbjct: 299 NAISDRTTGLDELIMDTLTLSKLDEGKIQVCFQEVDLVALVEQVIVANFTNREDSRQVAV 358

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHF--TPSGGQIIISTTHTSNEEVILRVRDT 744
             S   +   +  D++ +  +  N+LSNA  F  T  G  I  S        V L V D 
Sbjct: 359 --SVLGDPVWVTIDVKLMSHVLTNLLSNAFKFSSTNPGLVIEFS-----EHAVRLVVTDQ 411

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G+   +       F +   S   + +GTGLGL + K  V+   G   + ST   GT+ 
Sbjct: 412 GIGIPEKDRAYLFGKFFRA--SNVHQIKGTGLGLAICKEYVELMQGYLGVDSTEGIGTMF 469

Query: 805 EIIF 808
            I F
Sbjct: 470 TITF 473



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 51/132 (38%), Gaps = 3/132 (2%)

Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520
             + +   + +G  L  N A   + GY V +   +    F+ ++    +  YL ++ +  
Sbjct: 1   MKEVVFQASLDGNCLFLNPAWETITGYSVAESQGRQLLDFVREDDRPCIQTYLEQVKTGK 60

Query: 521 LRQTLEKITL-GSTKEEKLLSLRI--IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI 577
                  I L       + + + +   + K    +  S T+ DI++ +Q +  L  +++ 
Sbjct: 61  QSSDHPVIRLSHKMGSFRFVEIFVWQTLNKHQQVNGLSGTLIDITDRRQAEAALRESEER 120

Query: 578 AEKESSHKSDFL 589
             + + +  +  
Sbjct: 121 FRQIADNMEEMF 132



 Score = 65.4 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 20/236 (8%), Positives = 61/236 (25%), Gaps = 7/236 (2%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            +     G    ++       G    +  G +L D              + +K       
Sbjct: 5   VFQASLDGNCLFLNPAWETITGYSVAESQGRQLLDFVREDDRPCIQTYLEQVKTGKQSSD 64

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
              +        +  +++      +++++ +G  G  I           A  +  +++F 
Sbjct: 65  HPVIRLSHKMGSFRFVEIFVWQTLNKHQQVNGLSGTLI--DITDRRQAEAALRESEERFR 122

Query: 206 HLHEIKKGHSSVEKEKYDIF----SQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
            + +  +    +   +   F    S       L  +   S    +     +  +     +
Sbjct: 123 QIADNMEEMFWIRDLRERKFLYINSAYEAFSGLSPQPLFSDENAFLDFVFEPDRDTVLRV 182

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
               E SL  Q      + +    +    ++Q         +      +     ++
Sbjct: 183 FQEVEQSLSYQFRARHRDGSWRWLRVRAFSIQ-EGGSPSRRIGISADITSILEREQ 237


>gi|300777605|ref|ZP_07087463.1| virulence sensor histidine kinase EvgS [Chryseobacterium gleum ATCC
           35910]
 gi|300503115|gb|EFK34255.1| virulence sensor histidine kinase EvgS [Chryseobacterium gleum ATCC
           35910]
          Length = 735

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 84/304 (27%), Positives = 146/304 (48%), Gaps = 20/304 (6%)

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
             +G       +S+ +++        Y   +      +   ++L  A+K A   +  K +
Sbjct: 183 EEMGQKARFYDISILVLLILGGSVVGYH-ILRQFKRQRLLISELDIAEKKALVAAQTKEN 241

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           FLA +SHEIRTPL+ I+GF+ +++ +      +    E+ + I RSG  ++ I+ND+LD+
Sbjct: 242 FLANMSHEIRTPLSGILGFTNLLQKRPL----DETSAEFVSSIQRSGENLMAIINDILDL 297

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQ 706
           SKIE+G M +     S++  V+   +     A EK + I ++   +IP  ++ D   + Q
Sbjct: 298 SKIEAGMMRITPGIFSINGLVNSVETFFTERAKEKGLTISSTIEPSIPDTLVGDATRLTQ 357

Query: 707 IALNILSNAIHFTPSGGQIIIST---THTSNEEVI-LRVRDTGVGMTNYELEKAMKPFGQ 762
           I +N++ NAI FT  G  I +       T  E V+  ++ DTG+G+   +L +  + F Q
Sbjct: 358 ILVNLIGNAIKFTHQG-NITVEIYSKQQTEKEAVLGFKISDTGIGIDKEKLTEIFERFNQ 416

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP---------LYDT 813
             +S      GTGLGL + K+++    G   + S P KGT      P         +   
Sbjct: 417 GEDSTTRNYGGTGLGLSIVKSLILLQNGNIEVSSEPGKGTTFHFYIPYGIAEEQLTVLPA 476

Query: 814 SHPH 817
           + PH
Sbjct: 477 ADPH 480


>gi|144897852|emb|CAM74716.1| Signal transduction histidine kinase [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 844

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 84/284 (29%), Positives = 150/284 (52%), Gaps = 8/284 (2%)

Query: 532 STKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK-QEKNKLSHAKKIAEKESSHKSDFLA 590
              E+  ++ R+ ++        + + +D+++   +   +   A+  AE+ S  KS+FLA
Sbjct: 567 RRFEDGDMAHRLPVQSNDEMGVLASSFNDMADRVGESFQRAEEARLRAEEASRMKSEFLA 626

Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650
            +SHE+RTPL  IIGF+E+IK+       +    E A  I++SG+ +L++VN +LD++KI
Sbjct: 627 SMSHELRTPLNGIIGFAELIKDDA----ADEEMRENAEIIEKSGSHLLNLVNTILDVAKI 682

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIAL 709
           E+G M L  E V +   V+E  ++ Q  A+ K +  +   A+++P  ++ D   V+Q+  
Sbjct: 683 EAGAMTLARETVDIRTLVTEVAAIHQSGADAKGLDFQVQLADDLPPALVTDPVRVRQVLH 742

Query: 710 NILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
           N+LSNA+ FT +G    +       + V++RV D+G G+     +K  + F Q       
Sbjct: 743 NLLSNAVKFTQAGRVHTVVAA--DKDSVVIRVIDSGPGIALDLQDKIFEKFHQGDAFLTR 800

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
              GTGLGL LA+ +V+   G+  + S   +G+      P   +
Sbjct: 801 SHGGTGLGLTLARHLVELMGGEMSLESQVGQGSTFVFTLPAGHS 844


>gi|115376011|ref|ZP_01463258.1| putative histidine protein kinase [Stigmatella aurantiaca DW4/3-1]
 gi|115367010|gb|EAU65998.1| putative histidine protein kinase [Stigmatella aurantiaca DW4/3-1]
          Length = 758

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 96/588 (16%), Positives = 190/588 (32%), Gaps = 41/588 (6%)

Query: 237 KNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS 296
           ++ +   +E     DD   + ++  +           D  + N                 
Sbjct: 47  EHVLGRGSEVEFRIDDHGVSRRHARIVRTAEGTCHVSDLGSTNGTYVNGVAITSAELREG 106

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYK 355
                        S     +  E    + +    +  + ++        +     L    
Sbjct: 107 DRLQIGTVTVFRFSNREQLEPREEQLRQALSAARVGIWDWNAAAGTVTWSEHVDRLLGLP 166

Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
               +    G +  L       +      +L ++           + I+        ++ 
Sbjct: 167 ----LGTLSGRAMDLREVVHPGDMTRVREVLAQALERRSHVEME-YRIEPAGGGCRWLSC 221

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
                 +         G   +    +  ++++  +      I E+  DG+ I +  G I+
Sbjct: 222 KGDVLCDGAGVPNRITGTVMDITARKTAEQELRRQ----ALIFESLYDGVVITDLRGQII 277

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
             N +  ++FG      + +     L       +   +   L    R T E       K+
Sbjct: 278 DWNPSAERMFGRGKAQSVGQTLFSVLHPGEVDPLTLPMLSALEGAGRWTGEVEF--RRKD 335

Query: 536 EKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
             +     +   L  +      Y L   D++E K  + +L  + ++A   +       A 
Sbjct: 336 GMVCCCESVAVPLRDTEGRAIAYILVHRDVTERKHLQARLVMSDRLASLGT-----LGAG 390

Query: 592 VSHEIRTPLTAIIGFSEVIKN--QRFGPLGNPRYIEYANYIDRS----GNLVLDIVNDLL 645
           V+HEI  PL  ++    +I    +R  P  +   +E    I R        +  IV DL 
Sbjct: 391 VAHEINNPLAYMLVNLHLIHGGLERLRPAVSASTVEQLQQIARETTEGAERIASIVQDLK 450

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
             ++   G+      PV +  +V  A  +        R  + T F   +  + A    + 
Sbjct: 451 VFAR---GEQETRLGPVDVSRSVELACKMADNLV-RHRARLVTEFEP-VAMVEASESRLC 505

Query: 706 QIALNILSNAIHFTPSG-----GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760
           Q+ LN+L NA    P G      +I +     + E+V + V DTGVGM    L +   PF
Sbjct: 506 QVFLNLLLNAAQAIPEGEPADRHRITVRIRAQAPEQVAVLVEDTGVGMAPEVLARVFDPF 565

Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
               +     GEGTGLGL +   ++++  G     S P +G+   ++ 
Sbjct: 566 FTTKS----VGEGTGLGLSICHGIIESMGGTISAESEPGRGSTFRVVL 609



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 45/421 (10%), Positives = 103/421 (24%), Gaps = 45/421 (10%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQNTWYGKT 147
            D  G + + +    +  G    + +G  L  V     +DP        L+    W G+ 
Sbjct: 270 TDLRGQIIDWNPSAERMFGRGKAQSVGQTLFSVLHPGEVDPLTLPMLSALEGAGRWTGEV 329

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH- 206
                +G  +    +  A+P+         +    +          +A     D+  S  
Sbjct: 330 EFRRKDG--MVCCCESVAVPLRDTEGRAIAY--ILVHRDVTERKHLQARLVMSDRLASLG 385

Query: 207 ---------------------------LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK 239
                                      L  ++   S+   E+    ++++     R+ + 
Sbjct: 386 TLGAGVAHEINNPLAYMLVNLHLIHGGLERLRPAVSASTVEQLQQIARETTEGAERIASI 445

Query: 240 VSSLTE-YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINL--NQYTKKQYFGTLQNNS 296
           V  L       ++  L              + +    H   L            +     
Sbjct: 446 VQDLKVFARGEQETRLGPVDVSRSVELACKMADNLVRHRARLVTEFEPVAMVEASESRLC 505

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP--IPFFVYSHGNLFYANPSFLLLT-K 353
           +     L +           +   +T     + P  +   V   G +  A      +   
Sbjct: 506 QVFLNLLLNAAQAIPEGEPADRHRITVRIRAQAPEQVAVLVEDTG-VGMAPEVLARVFDP 564

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
           + +   +    GL   +    +                +      R    +        +
Sbjct: 565 FFTTKSVGEGTGLGLSICHGIIESMGGTISAESEPGRGSTFRVVLRTVAGRAEDVT-RPI 623

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
             +P +        +     EP           ME EV    S   +  D + ++ ++G 
Sbjct: 624 ALLPAQAPASPRTRVLVVDDEPNVTLALQRSLGMEHEV----STANSAVDALRLLGQDGR 679

Query: 474 I 474
            
Sbjct: 680 F 680


>gi|220905763|ref|YP_002481074.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219862374|gb|ACL42713.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 838

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 90/563 (15%), Positives = 197/563 (34%), Gaps = 51/563 (9%)

Query: 276 HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV 335
           H     +    Q    LQ  + +    L+H          ++        ++      + 
Sbjct: 166 HHCQAARRWTAQEVDLLQQLANQVGIALTHSQLVQALLESEQRWQFA---LEGSGDGVWD 222

Query: 336 YSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394
           ++      + +P +  +  Y   + I            P+       +    +R + +  
Sbjct: 223 WNLQTNEIFFSPRWKAMLGYGETE-IGNHLEEWESRVHPEDKAQVYTEIHRHFRRETSQY 281

Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
            +  RL     +      +            + +   G   +  + +    K++ +    
Sbjct: 282 VSEHRLR--CKDGSYRWMLDRGRVISWGLDGQPLRMIGTHTDVTERKQAAAKLQEQ---- 335

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
            ++LE T+D I + +    I   N+    L+G+   + L +     L       +   L 
Sbjct: 336 AALLEITTDAILVRDLNHTIQFWNKGAEHLYGWSTAEALGQNANHLLYPQHSIQLEEALI 395

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNK 570
            +L               +K ++ L++      +  S            DI+E K  + +
Sbjct: 396 TVLEQGYWSG---ELQQISKTQRTLTVESRWTLMRDSESNPQAILTVTTDITEKKLLEAQ 452

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK----NQRFGPLGNPRYIEY 626
              A+++              ++H++   LT I+  +++++    ++R       R  E 
Sbjct: 453 FLRAQRL-----ESLGTLAGGIAHDLNNLLTPILMAAQLLQQKPQDERSQERSQERSQEL 507

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
              ++ +     D+V  +L  ++   GK      P+ +   + E + L +     K I I
Sbjct: 508 LQILETNARRGADLVKQVLAFARGVEGK----RLPLQVGHLLKEIVQLGKSTFP-KSIRI 562

Query: 687 RTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT------------- 732
           R++    N+  + AD+  + Q+ +N+  NA    P GG + I+  +              
Sbjct: 563 RSTITPANLWLVSADVTQLHQVFMNLCVNARDAMPEGGILSITAENQWLDGNYARTHLEA 622

Query: 733 -SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
            +   V + V DTG G+    LE+  +PF    +     G+GTGLGL  A  +V ++ G 
Sbjct: 623 GAGAYVKVTVADTGSGIAPELLERIFEPFFTTKD----VGQGTGLGLSTALGIVKSHGGF 678

Query: 792 FYIFSTPAKGTLIEIIFPLYDTS 814
             + S  A+G+  ++  P     
Sbjct: 679 IQVESQVAQGSQFQVYLPAVSAE 701



 Score = 42.3 bits (98), Expect = 0.37,   Method: Composition-based stats.
 Identities = 37/410 (9%), Positives = 96/410 (23%), Gaps = 28/410 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCD----VSDILHIDPNNHIGDLLKRQN 141
            W+ +        S      +G    + IG  L +    V           I    +R+ 
Sbjct: 220 VWDWNLQTNEIFFSPRWKAMLGYGETE-IGNHLEEWESRVHPEDKAQVYTEIHRHFRRET 278

Query: 142 T-WYGKTTLWPIEGTNLYVPIDLAALPI-YSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199
           + +  +  L   +G+  Y  +      I +  + +    R  G            A  + 
Sbjct: 279 SQYVSEHRLRCKDGS--YRWMLDRGRVISWGLDGQP--LRMIGTHTDVTERKQAAAKLQE 334

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
                    +       +                      +     +  +    ++ E+ 
Sbjct: 335 QAALLEITTDAIL-VRDLNHTIQFWNKGAEHLYGWSTAEALGQNANHLLYPQHSIQLEEA 393

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
            +   E+     +    +      T +  +  ++++       L+     +     +   
Sbjct: 394 LITVLEQGYWSGELQQISKTQRTLTVESRWTLMRDSESNPQAILTVTTDITEKKLLEAQF 453

Query: 320 NLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
                      +       G     N     +    +   ++         +  +     
Sbjct: 454 LRAQRLESLGTLA-----GGIAHDLNNLLTPILM--AAQLLQQKPQDERSQERSQERSQE 506

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
            ++ +         +             +          ++  Q  ++     I      
Sbjct: 507 LLQILETNARRGADLVKQVLAFARGVEGKRLPLQVGHLLKEIVQLGKSTFPKSIRIRSTI 566

Query: 440 TRINKRKMEIEVMQLCSIL--------EATSD-GIAIINREGIILSTNRA 480
           T  N   +  +V QL  +         +A  + GI  I  E   L  N A
Sbjct: 567 TPANLWLVSADVTQLHQVFMNLCVNARDAMPEGGILSITAENQWLDGNYA 616


>gi|152971177|ref|YP_001336286.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|262043281|ref|ZP_06016412.1| sensor kinase RcsC [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|330000607|ref|ZP_08303750.1| sensor kinase protein RcsC [Klebsiella sp. MS 92-3]
 gi|150956026|gb|ABR78056.1| hybrid sensory histidine kinase in two-component regulatory system
           with RcsB [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|259039380|gb|EEW40520.1| sensor kinase RcsC [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|328537949|gb|EGF64128.1| sensor kinase protein RcsC [Klebsiella sp. MS 92-3]
          Length = 946

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 91/409 (22%), Positives = 166/409 (40%), Gaps = 32/409 (7%)

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDV---DTRINKRKMEIEVMQLCSILEATSDG 464
           E    +              +       E         + +++E        I+ +   G
Sbjct: 308 ERIRMLIINAIVLNILSGAMLFALARMYERRIFIPAENDAQRLEEHEQFNRKIVASAPVG 367

Query: 465 IAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
           I I+   +G  + +N            +  ++                 LT+I+      
Sbjct: 368 ICILRTADGTNILSNELAHNYLNMLTHEDRQR-----------------LTQIICGQQVN 410

Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
            ++      T     L +  +  +    +     + D+S   + +  L    + AE+ S 
Sbjct: 411 FVD----VLTSNHTNLQISFVHSRYRNENVAICVLVDVSARVKMEESLQEMAQAAEQASQ 466

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
            KS FLA VSHE+RTPL  IIG  + +   +  P G  R       ++ S +L+L I++D
Sbjct: 467 SKSMFLATVSHELRTPLYGIIGNLD-LLQTKALPKGVDR---LVTAMNNSSSLLLKIISD 522

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLR 702
           +LD SKIES ++ +     S  E ++   +        K++ +      ++P  +  D  
Sbjct: 523 ILDFSKIESEQLKIEPREFSPREVMNHISANYLPLVVRKQLGLYCFIEPDVPEQMSGDPM 582

Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
            ++Q+  N+LSNAI FT +G  I++     + + + + VRDTG G+   E+ +   PF Q
Sbjct: 583 RLQQVISNLLSNAIKFTDTG-CIVLHVQC-AGDYLQISVRDTGEGIPAKEVLRLFDPFFQ 640

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
           +    Q   +GTGLGL + + ++    G   + + P  G+   I  PLY
Sbjct: 641 VGTGVQRNFQGTGLGLAICEKLISMMDGDIAVETEPGMGSRFTIRIPLY 689


>gi|126659206|ref|ZP_01730344.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110]
 gi|126619511|gb|EAZ90242.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110]
          Length = 701

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 94/522 (18%), Positives = 181/522 (34%), Gaps = 77/522 (14%)

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411
                 D+      L+  +          I    +  ++       A    I  +  +  
Sbjct: 45  FGRTPDDEFTYDQWLNDSIHPDDRDRVQVIIETAIALNE----DYEAEYRVIHPDG-SLH 99

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINK-------RKMEIEVMQLC--------- 455
            +        +   +     GI  +  + +  +        + +    +           
Sbjct: 100 WVLGRGRIIDHVNGQPNRMIGITVDITEQKQAQLEKEQLLAQQKRSSERYRFLSEISILL 159

Query: 456 --------SILEATSDGIAIINREGIILS------TNRA------------VSKLFGYPV 489
                   + L   +     I  +   +        NR               ++  YP 
Sbjct: 160 SSSLDDYKTTLNRVTHLAVPIIADWCFIDLIEDDQVNRVSIAYSDPHQSELAKEVLKYPP 219

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
           E+ L  P    L +    +++ +  E++S   +    +  +  T       L ++   L 
Sbjct: 220 ENNLYDPPAKVLFEQKSLLISEFTDEMISKATKNLEHEKVIQKT-----YPLSLMAVPLV 274

Query: 550 FSSCYSLTMHDIS--------------------EWKQEKNKLSHAKKIAEKESSHKSDFL 589
                   +  ++                        +    +     A+  +  K DFL
Sbjct: 275 ARQNTLGVITFVTTGYSNRRLTTEDLAIAEEIGRRAAQAVDNAWLYHQAQIANRAKDDFL 334

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
           A +SHE+RTPL  IIG+ E++      P    +  +    IDR+  L   ++ DLLD+S+
Sbjct: 335 AMLSHELRTPLNPIIGWCELLNRGNLSP---EQTKQAVEIIDRNAKLQSHLIEDLLDVSR 391

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709
           I  GK++L    + L   +  AI  VQL A +  + I T    ++  I  D+  + Q+  
Sbjct: 392 ILQGKLHLQKCSLDLKTIILSAIETVQLMAKKSSVTIETKLDTDVHPISGDITRLHQVVW 451

Query: 710 NILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
           N+LSNAI F+PS   + +S +       ++ ++D G G+    L      F Q  +S+  
Sbjct: 452 NLLSNAIKFSPSHSTVTVSLSAVD-GMALIEIKDQGKGIEPEFLPYIFDRFSQSESSKNR 510

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFPL 810
              G GLGL + + +V+ + GK    S    +G    + FP+
Sbjct: 511 DYGGLGLGLTIVRNLVEMHDGKIKADSLGINQGATFTVAFPI 552


>gi|307152913|ref|YP_003888297.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306983141|gb|ADN15022.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 1613

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 83/258 (32%), Positives = 140/258 (54%), Gaps = 12/258 (4%)

Query: 559  HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
              + +  ++   L  AKK A+  +  KS+FLA +SHEIRTP+ A++GFS+++++     +
Sbjct: 1094 RRLKQLSEKNKALGRAKKEADIANKAKSEFLANMSHEIRTPMNAVLGFSDLLQD----II 1149

Query: 619  GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
              P   EY   I  SG  +L ++ND+LD+SKIE+GK+ LH+EP++L   ++E   + +  
Sbjct: 1150 TEPEAKEYLEAISASGKTLLRLINDILDLSKIEAGKLTLHYEPINLRILIAEIEQIFRHQ 1209

Query: 679  ANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE- 736
            A EK + +++     +P  +  D   ++QI LN++ NA  FT +G QI I+    +N E 
Sbjct: 1210 ATEKGLNLKSEIDPKLPCGVELDEVRLRQILLNVVGNAFKFTDTG-QIKITVNCRANPEH 1268

Query: 737  -----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
                 + + V DTG+G++     K    F Q       +  GTGLGL + + +V    G 
Sbjct: 1269 SEKIDLKISVEDTGIGISPDNQTKIFNAFTQSEGQSNRKYGGTGLGLAITQRLVQMMGGT 1328

Query: 792  FYIFSTPAKGTLIEIIFP 809
             ++ S   +G+     FP
Sbjct: 1329 VHLQSQQGQGSKFTFYFP 1346



 Score =  115 bits (288), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 38/403 (9%), Positives = 110/403 (27%), Gaps = 19/403 (4%)

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS-- 242
                        +    +F    +     + +   +  +        +L  K++     
Sbjct: 526 QELEERQRTETALRETKARFQAFMKNAPLLAWINSLEGKMIYANQALLNLLDKSEQEVIA 585

Query: 243 --LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF 300
             L E +  +      +    +      L   E     + +          +    ++ +
Sbjct: 586 HTLQELFPQEFAQKYQDNNAYVARTGEILETLESAIQPDGSPKNYLVRKFPIFLEEQDPW 645

Query: 301 E---YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG--NLFYANPSFLLLTKYK 355
                +         A     E    +  +     FF+ S     + Y +P++  +    
Sbjct: 646 IGGMAVDITAQQKAEAALITSEARFRQIAENIEEVFFINSADVSEIIYISPAYEKIWGRT 705

Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
                +  G            D+     + + R  +           I+ + E    ++ 
Sbjct: 706 CQSLYDNPG----TWFDALHPDDRQNVEMAIARQQQGE-PFQEEYRIIRPDGEVRWILS- 759

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
             F   N   +     G+  +  + +  +  ++    +   + E+ +    ++ + G I+
Sbjct: 760 RAFPIYNDLGQLQHYVGLAADLTERKQAEAALQQSEAKFRELTESIAQVFYLMGKNGEII 819

Query: 476 STNRAVSKLFGYPVEDILRKPFTVF--LEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
             + A   ++G   E + + P +    +     S +   L   +            +G  
Sbjct: 820 YISPAYQAIWGKTCESLYQDPGSWLVSIHPEDLSRVATALDAQIKKGEPFDEIYRIIGLN 879

Query: 534 KEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHA 574
           +E + +  +             +     DI+  K  ++ L H 
Sbjct: 880 EEIRWIHAQSFPTYDKKGQIYRFPGFAEDITARKLAEDALQHQ 922



 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/347 (10%), Positives = 94/347 (27%), Gaps = 24/347 (6%)

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
           L+     L  +   +   Q+    +      + +         ++  E            
Sbjct: 482 LENLAIHLEIAIGQATLVQQVQQHLEAQVAQQTRQLQQANQRLQQELE-----ERQRTET 536

Query: 314 YFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
              E +      +   P+  ++ S  G + YAN + L L      + I     L  L   
Sbjct: 537 ALRETKARFQAFMKNAPLLAWINSLEGKMIYANQALLNLLDKSEQEVIAHT--LQELFPQ 594

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
                       +    +            IQ +      +         +    +   G
Sbjct: 595 EFAQKYQDNNAYVARTGE----ILETLESAIQPDGSPKNYLVRKFPIFLEEQDPWIG--G 648

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVED 491
           +  +    +  +  +     +   I E   +   I + +   I+  + A  K++G   + 
Sbjct: 649 MAVDITAQQKAEAALITSEARFRQIAENIEEVFFINSADVSEIIYISPAYEKIWGRTCQS 708

Query: 492 ILRKPFTVF--LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
           +   P T F  L  +    +   +         +  ++       + ++  +      + 
Sbjct: 709 LYDNPGTWFDALHPDDRQNVEMAIARQQQG---EPFQEEYRIIRPDGEVRWILSRAFPIY 765

Query: 550 FSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
                   Y     D++E KQ +  L  ++    + +   +     +
Sbjct: 766 NDLGQLQHYVGLAADLTERKQAEAALQQSEAKFRELTESIAQVFYLM 812



 Score = 91.2 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 39/419 (9%), Positives = 104/419 (24%), Gaps = 26/419 (6%)

Query: 57  QNQESVSNTNYLDSENTFVFDPIPRTVRFT-WNIDAHGYLKEISEELPKTIGNYAFKMIG 115
           Q  E    T     E    F    +      W     G +   ++ L   +     ++I 
Sbjct: 526 QELEERQRTETALRETKARFQAFMKNAPLLAWINSLEGKMIYANQALLNLLDKSEQEVIA 585

Query: 116 MRLCDVSDILHIDPN-NHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNRE 174
             L ++          ++   + +         +    +G+     +     PI+   ++
Sbjct: 586 HTLQELFPQEFAQKYQDNNAYVARTGEILETLESAIQPDGSPKNYLVR--KFPIFLEEQD 643

Query: 175 FSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKY---DIFSQQSPP 231
              + G G+           A     + +F  + E  +    +           S     
Sbjct: 644 P--WIG-GMAVDITAQQKAEAALITSEARFRQIAENIEEVFFINSADVSEIIYISPAYEK 700

Query: 232 PHLRMKNKVSSLTEY---YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288
              R    +           H DD    E       +     E+      +         
Sbjct: 701 IWGRTCQSLYDNPGTWFDALHPDDRQNVEMAIARQQQGEPFQEEYRIIRPDGEVRWILSR 760

Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-----FVYSHGNLFY 343
              + N+  +   Y+      +     +     +     +           +  +G + Y
Sbjct: 761 AFPIYNDLGQLQHYVGLAADLTERKQAEAALQQSEAKFRELTESIAQVFYLMGKNGEIIY 820

Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403
            +P++  +         +  G     +    LS       +               ++ I
Sbjct: 821 ISPAYQAIWGKTCESLYQDPGSWLVSIHPEDLSR--VATALDAQIKKGEPFD---EIYRI 875

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ---LCSILE 459
               E    +    F   ++  +     G   +    ++ +  ++ ++ +   L  I +
Sbjct: 876 IGLNEEIRWIHAQSFPTYDKKGQIYRFPGFAEDITARKLAEDALQHQLNKTLLLQKITD 934


>gi|189425740|ref|YP_001952917.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi
           SZ]
 gi|189421999|gb|ACD96397.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi
           SZ]
          Length = 645

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 89/264 (33%), Positives = 136/264 (51%), Gaps = 10/264 (3%)

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
           H+I   +Q +  L+ AK  AE  ++ KS FL+ +SHEIRTP++ ++G +E++      P 
Sbjct: 238 HEIRMRQQVETDLAQAKCAAEAANTAKSQFLSNMSHEIRTPMSGVLGMTELLGFTELTP- 296

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
                 EY N I  S + +L I+ND+LD+SKIE+GK+ L     SL + +    ++    
Sbjct: 297 ---EQHEYLNDIKASADNLLSIINDILDLSKIEAGKIELEAANFSLQQCIRTTTAMQMPR 353

Query: 679 ANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE- 736
             EK + I T  +  IP ++  D   VKQI LN+LSNA+ FT + GQI I  +   +   
Sbjct: 354 ILEKHLQIETKISPEIPEVVNGDQLRVKQILLNLLSNAVKFT-AHGQISIQASLLESRNE 412

Query: 737 ---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
              V + V DTGVG+    L++   PF Q   S   +  GTGLGL + + + +   G   
Sbjct: 413 HLLVQISVSDTGVGIAAEALDRIFDPFTQADASTSRKFGGTGLGLAICRQLAELMGGGIR 472

Query: 794 IFSTPAKGTLIEIIFPLYDTSHPH 817
           + S   KG+   +  P      P 
Sbjct: 473 VESEEGKGSRFHLRLPFKRPGEPE 496


>gi|83815334|ref|YP_445007.1| sensory transduction histidine kinase [Salinibacter ruber DSM
           13855]
 gi|83756728|gb|ABC44841.1| sensory transduction histidine kinase [Salinibacter ruber DSM
           13855]
          Length = 668

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 101/623 (16%), Positives = 203/623 (32%), Gaps = 16/623 (2%)

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY 246
            R   D                +    H    + +    + +      R+      L   
Sbjct: 44  ARPTPDDSLRLGPAASIAEVRVDANADHVPDRRGETVTVAGRVTAGRGRLAVSRPRLVAV 103

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
                 +       L+     SL  +            +    G +      +   L   
Sbjct: 104 QDRTAGIHVRLPDSLVVERGDSLRVRGVVTHAYGLTRLRGAE-GRVVEAGARTPAPLPLT 162

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
            + +     +         +           +  L     +     +    +      GL
Sbjct: 163 VNTAAGEQHEGRLARVRGRIAGKGTN-RGGDYLRLQAQGTASPAQIEVFVAERHGDRFGL 221

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
               +   +     +                 R       +    +              
Sbjct: 222 DRFAEGDAIEVTGVVGQYDFEAPYDEYYQIEPR-GRDDLAQVGWPSTYLRAALLILAGGG 280

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
            +    +       +   +++E    +   + EAT +GIA+   +G I+  N +++++  
Sbjct: 281 LVGAIVVIGLRAAVQRRTQELEESRARFRRLAEATLEGIALHETDGTIVDANASLAQMMD 340

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
              E ++ K  T  L        +              +E   + +      + +     
Sbjct: 341 TDREALIGKDITALLASAPSVHWDRA-----EGRTDAPVETELVHAGGTTTPVEVETRTV 395

Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
                  +   + D+SE K+ ++++  AK+ AE+ +  KS  +  +SHE+RTP+T I G+
Sbjct: 396 TTGDEPVHVCAVRDLSERKEWEDEMLRAKQEAEQAARLKSTLIHNMSHELRTPITTITGY 455

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
           +EVI  +   P     +  +A  I  SG  + D +  +LD+++IESG + +  + VS+  
Sbjct: 456 AEVIMEEAEEP-----HRSFALQIRESGRRLSDTLQSVLDMAQIESGTLEVTVQEVSVPG 510

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726
            V + +        +K +        +   +  D   + +I  N++ NA+ FT  G +  
Sbjct: 511 VVRDVVDRHAQAIEDKALTAELDVPEDC-VVATDRALLYRILNNLVQNAVKFTEKG-RCQ 568

Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
           +     +   V + VRDTGVG+         +PF Q         EGTGLGL L K +VD
Sbjct: 569 VWVEPVAFG-VRIHVRDTGVGIDPAFRPHLFEPFKQESEGVAREYEGTGLGLALTKRLVD 627

Query: 787 ANMGKFYIFSTPAKGTLIEIIFP 809
              G   + S   +G+   +  P
Sbjct: 628 LLGGAIEVDSAKGEGSAFTVELP 650


>gi|298376648|ref|ZP_06986603.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_19]
 gi|298266526|gb|EFI08184.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_19]
          Length = 423

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 101/386 (26%), Positives = 177/386 (45%), Gaps = 33/386 (8%)

Query: 446 KMEIEVMQ---------LCSILEATSDGIAIINR-EG-IILSTNRAVSKLFGYPVEDILR 494
           ++E+   Q         + +IL      I + +   G   +  N+A  +  G   EDIL 
Sbjct: 36  ELEMRQSQHTINFLNILMDTILSNVFVEITVKDIFNGFRYIYFNKAAEEFTGVKAEDILG 95

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK-----LLSLRIIIKKLP 549
           K        ++         +  ++   + ++++        +     ++ L I      
Sbjct: 96  KTDFELF-PDSRRAHEIRTEDYHTIKTGRMVKEMVEYEKPNGEVRIVNIVRLLITNPDPG 154

Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
            S    + ++DI+E +Q++  L   +    +    K+ F+A +SHEIRTPL AI+GF+ +
Sbjct: 155 ASPLLLVMLNDITEQRQDQLALMKVQ----EADKMKNAFIANMSHEIRTPLNAIVGFAHL 210

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           +              EY + I+++ +L+L  +ND+LD+SKIESG++N +   V L +   
Sbjct: 211 VTETTNAS----EQREYFSIINKNCDLLLKQINDILDLSKIESGRLNYNVSEVELRDICQ 266

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
           EA  +  L       L+  S A    R+  D   V+Q+ LN+LSNAI FT  G    IS 
Sbjct: 267 EAYVVQSLKMTSDVALLYNSVAMPSVRLWIDPHRVEQVLLNLLSNAIKFTSKG---FISL 323

Query: 730 THT-SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
            +   +  V + V DTG+G++  +LE   + F ++ +      +G GLGLP+ K +V+  
Sbjct: 324 FYEVEDMFVRVSVMDTGIGISEEKLESVFERFVKLDDF----YQGAGLGLPICKMIVEQL 379

Query: 789 MGKFYIFSTPAKGTLIEIIFPLYDTS 814
            G+  + S   KG+      PL  T 
Sbjct: 380 GGEIGVRSELGKGSTFWFTLPLVVTD 405


>gi|172058760|ref|YP_001815220.1| multi-sensor signal transduction histidine kinase [Exiguobacterium
           sibiricum 255-15]
 gi|171991281|gb|ACB62203.1| multi-sensor signal transduction histidine kinase [Exiguobacterium
           sibiricum 255-15]
          Length = 812

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 95/547 (17%), Positives = 201/547 (36%), Gaps = 42/547 (7%)

Query: 281 NQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI------PFF 334
              +           +  +  +L  RN  + +    +     P  ++K            
Sbjct: 291 RLMSSNDNLEQALRLTLRNEAHLKIRNQLTETLASRDTVTAYPAVIEKMVEITDSTNGSL 350

Query: 335 VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394
           ++  G     N     LT+ +  D I     +           + A              
Sbjct: 351 IFKEGTTV-TNIISYGLTEQEQDDLIATIEPVIRR-ARKDKVPHIAQFAQRAVAITPVLD 408

Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
           A++  +            M         +  E           +       ++  E  + 
Sbjct: 409 ASTDEIIAY------IYLMRLHHPFDPQEQEELAAFARQLALSLLRMRTFDEIGREREKT 462

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN--TPSVMNHY 512
             +L +  + I  I  +G I   NR +  LF +P     +  + + ++ +          
Sbjct: 463 ARLLNSIRESIVYIEPDGPIQLINRPLLDLFDHPSAVDSKAEWLIEIDDSITYLKNRVDQ 522

Query: 513 LTEILSLDLRQTLEKIT-----LGSTKEEKLL-SLRIIIKKLPFSSCYSLTMHDISEWKQ 566
           L+E      +  + + T         +E++ + +    I          L + D++    
Sbjct: 523 LSEFERYLHQTFINRETGEGITFSIDREKRFIKTYSEEIHYGGKFRGILLVLRDVT---- 578

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
                        +    K++ ++ +SHE+RTPL++I GF+E++  +   P    R  +Y
Sbjct: 579 ----------NEVEIDRIKNELVSTISHELRTPLSSIYGFTELMIQRDLPPH---RQKKY 625

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
              +      +  ++ND LD+ ++E+ +    FEP  L   + +   L  L ++   I I
Sbjct: 626 LAAVHSETERLSLLINDFLDLQRMEANRQEYTFEPFDLLAMMKDLKQLHSLSSSSHDIRI 685

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
            +     +  I  D + ++Q+  N+++NAI ++P GG I I  T   N  V + + D G+
Sbjct: 686 FSE--ETVQIINGDSKKIRQLFGNLVNNAIKYSPDGGPIEIRVT-EHNNRVTVALTDYGI 742

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+ +  + +  + F ++ NS   +  GTGLGL + + +  A+ G+ ++ S   +G+   +
Sbjct: 743 GIPSSAMSELFQKFYRVDNSDTRQIGGTGLGLSICREIARAHDGEIHVESIEGQGSTFTV 802

Query: 807 IFPLYDT 813
             PL  T
Sbjct: 803 DLPLNPT 809


>gi|238895766|ref|YP_002920502.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Klebsiella pneumoniae NTUH-K2044]
 gi|238548084|dbj|BAH64435.1| hybrid sensory histidine kinase in two-component regulatory system
           with RcsB [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 946

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 91/409 (22%), Positives = 166/409 (40%), Gaps = 32/409 (7%)

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDV---DTRINKRKMEIEVMQLCSILEATSDG 464
           E    +              +       E         + +++E        I+ +   G
Sbjct: 308 ERIRMLIINAIVLNILSGAMLFALARMYERRIFIPAENDAQRLEEHEQFNRKIVASAPVG 367

Query: 465 IAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
           I I+   +G  + +N            +  ++                 LT+I+      
Sbjct: 368 ICILRTADGTNILSNELAHNYLNMLTHEDRQR-----------------LTQIICGQQVN 410

Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
            ++      T     L +  +  +    +     + D+S   + +  L    + AE+ S 
Sbjct: 411 FVD----VLTSNHTNLQISFVHSRYRNENVAICVLVDVSARVKMEESLQEMAQAAEQASQ 466

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
            KS FLA VSHE+RTPL  IIG  + +   +  P G  R       ++ S +L+L I++D
Sbjct: 467 SKSMFLATVSHELRTPLYGIIGNLD-LLQTKALPKGVDR---LVTAMNNSSSLLLKIISD 522

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLR 702
           +LD SKIES ++ +     S  E ++   +        K++ +      ++P  +  D  
Sbjct: 523 ILDFSKIESEQLKIEPREFSPREVMNHISANYLPLVVRKQLGLYCFIEPDVPEQMSGDPM 582

Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
            ++Q+  N+LSNAI FT +G  I++     + + + + VRDTG G+   E+ +   PF Q
Sbjct: 583 RLQQVISNLLSNAIKFTDTG-CIVLHVQC-AGDYLQISVRDTGEGIPAKEVLRLFDPFFQ 640

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
           +    Q   +GTGLGL + + ++    G   + + P  G+   I  PLY
Sbjct: 641 VGTGVQRNFQGTGLGLAICEKLISMMDGDIAVETEPGMGSRFTIRIPLY 689


>gi|171915231|ref|ZP_02930701.1| Multi-sensor Hybrid Histidine Kinase [Verrucomicrobium spinosum DSM
           4136]
          Length = 677

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 92/581 (15%), Positives = 193/581 (33%), Gaps = 59/581 (10%)

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
                +  E+    T        +     ++N   +           +     +E    +
Sbjct: 2   RGARHTWDEEMQIRTAKDRLVWVRVMGQAVRNGDGQIIRVHGAFQDITEKKQAEEALRES 61

Query: 323 PETVDKC----PIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
            +T+       P   +++   G +   N  F  +T Y S +       +  ++    +  
Sbjct: 62  EQTLAALMFNLPCAVYLFGQDGRMLRWNAEFENVTGYSSEE-------IERMVPEQFIVP 114

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
           ++            T   A A L  +    +    +           P      G+  + 
Sbjct: 115 DDVSTVRARIAEAFTSGHALAELRLLSKKGKTVPYIYSASLILMEGQPCL---LGVGMDM 171

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
              R  + ++  +      +L+   D I ++N E  +   N+   +L+ +  E+ L +  
Sbjct: 172 SAQRQAEMQLREQAE----LLDKAQDAILVVNLERRVTYWNKGAQQLYAWSSEEALGREV 227

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---- 553
              L    P+      T++ +               K+ + L +      +         
Sbjct: 228 ADLLHAE-PNEFQGAFTQVNAAGE---WTGELKQQAKDGRPLIVESRWDLVRDDQGQPRS 283

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
             +   DI+E K+ + +   A+++              ++H++   L+ I+   +++K  
Sbjct: 284 LLVINTDITEKKRLERQFFRAQRM-----ESIGTLAGGMAHDLNNVLSPIMMAVDLLK-- 336

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
                 +    E    I  S     D+V  +L  ++   G+ +     V     V +   
Sbjct: 337 --LNTPDSGSQELLENIATSAKRGADMVGQVLSFARGVEGRRD----EVHAGRLVDDVER 390

Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST---- 729
           +++     K I IRT+  N++  +  DL  + Q+ LN+  NA    P GG I IS     
Sbjct: 391 IIRDTFP-KNIQIRTNVGNDLWSLTGDLTQLHQVLLNLCVNARDAMPEGGCIAISVDNIT 449

Query: 730 ----------THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
                            ++++V DTG G+    ++K   PF          G+GTGLGL 
Sbjct: 450 LDAHYAAMNMEAKVGPYLVIQVEDTGTGIPAAIMDKIFDPFFTTKA----VGKGTGLGLS 505

Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820
            + A++ ++ G     S   KG    I  P    +     +
Sbjct: 506 TSMAIIKSHGGFIRAHSEAGKGAKFRIYLPARSVAQNQPAV 546



 Score = 45.0 bits (105), Expect = 0.058,   Method: Composition-based stats.
 Identities = 22/245 (8%), Positives = 61/245 (24%), Gaps = 18/245 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN-HIGDLLKRQNTWY 144
            +     G +   + E     G  + ++  M          +      I +     +   
Sbjct: 76  VYLFGQDGRMLRWNAEFENVTGYSSEEIERMVPEQFIVPDDVSTVRARIAEAFTSGHALA 135

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIV----HVNRVDNDPRALGKRL 200
               L     T   VP   +A  I     +     G G+         +    +A     
Sbjct: 136 ELRLLSKKGKT---VPYIYSASLIL-MEGQ-PCLLGVGMDMSAQRQAEMQLREQAELLDK 190

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
            +    +  +++  +   K    +++  S     R   +V+ L     ++     T+   
Sbjct: 191 AQDAILVVNLERRVTYWNKGAQQLYAWSSEEALGR---EVADLLHAEPNEFQGAFTQVNA 247

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
                     + +D   + +           ++++  +    L      +     +    
Sbjct: 248 AGEWTGELKQQAKDGRPLIVESRWD-----LVRDDQGQPRSLLVINTDITEKKRLERQFF 302

Query: 321 LTPET 325
                
Sbjct: 303 RAQRM 307


>gi|225868179|ref|YP_002744127.1| sensor histidine kinase [Streptococcus equi subsp. zooepidemicus]
 gi|225701455|emb|CAW98588.1| sensor histidine kinase [Streptococcus equi subsp. zooepidemicus]
          Length = 450

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 91/406 (22%), Positives = 170/406 (41%), Gaps = 36/406 (8%)

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDT-RINKRKMEIEVMQLCSILEATSDGIAIINREG 472
            +          E M  +    +  D  R+    +  E  +L SIL   +DG+   NR G
Sbjct: 55  RYTDTINEKADIELMELSEQLNDLSDVFRLTHENLAQEKNRLASILAYMTDGVLATNRSG 114

Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
            I+  N    K      E  L K  T  L+ ++P      +++        TL +     
Sbjct: 115 KIIMINETAQKQLNLNREQALEKNITDLLDSDSPYTYRELVSKT----PIVTLNR----R 166

Query: 533 TKEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
               + +SLR+        S +     + +HD +E ++E+ +                 F
Sbjct: 167 NDTGEFVSLRLRFALNRRESGFISGLVVVLHDTTEQEKEERERRL--------------F 212

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
           ++ VSHE+RTPLT++  + E +     G L       +        N ++ +++DLL++S
Sbjct: 213 VSNVSHELRTPLTSVKSYLEAL---DEGALKEDIAPSFIKVSLDETNRMMRMISDLLNLS 269

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLV-----QLYANEKRILIRTSFANNIPRILADLRS 703
           +I++    L  E  +    ++  ++       Q  +  K   I   +      +  D   
Sbjct: 270 RIDNHVTQLSVEMTNFTAFMTSILNRFDLVKNQHTSTGKSYEIVRDYPITSIWLEIDNDK 329

Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
           + Q+  NIL+NAI ++P GG+II++   T   ++I+ + D G+G+   +L      F ++
Sbjct: 330 MTQVIENILNNAIKYSPDGGKIIVNMKTTDT-QLIISISDEGLGIPKKDLPLIFDRFYRV 388

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             ++     GTGLGL +AK ++  + G  +  S   KG+   I+ P
Sbjct: 389 DKARSRAQGGTGLGLAIAKEIIKQHRGFIWAKSDYGKGSTFTIVLP 434


>gi|148657916|ref|YP_001278121.1| PAS/PAC sensor signal transduction histidine kinase [Roseiflexus
           sp. RS-1]
 gi|148570026|gb|ABQ92171.1| PAS/PAC sensor signal transduction histidine kinase [Roseiflexus
           sp. RS-1]
          Length = 392

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 73/367 (19%), Positives = 156/367 (42%), Gaps = 44/367 (11%)

Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522
           DG+ +++ +  +   NR   +L        + +              ++ +  ++   + 
Sbjct: 52  DGVVLVDADRRVRYINRQAEELLNLSHTISIGQGLITL-------ARDYQVDAMVEEAIA 104

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISEWKQEKNKLSHAKKIAEKE 581
               + ++      +  +LR+    L        L + D+++    +             
Sbjct: 105 SAEPRESIFQ-PLGRQRTLRLRAIPLDDGARGALLLVRDVTQLSLLE------------- 150

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
              + D +A VSHE+RTPL ++    E +++    P+         + I +  + +  +V
Sbjct: 151 -RARRDLVANVSHELRTPLASMKLLVETLQSDPPPPVA----KRMLDQIAQEVDAITQLV 205

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701
            +L ++++IESG++ L   P  L   V+  I  ++   + K + + T   +++P+ L D 
Sbjct: 206 EELHELAQIESGRVALQLVPAPLAPLVARTIERIRPQMDRKHLQMTTDVPDDLPQALIDC 265

Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTT-----------------HTSNEEVILRVRDT 744
             V Q+ LN+L NA  FTP GG + I+                   H   + ++L V D 
Sbjct: 266 NRVGQVLLNLLHNASKFTPEGGCVSIAARVITVGDGSPPPPGLPPSHAPGQWLLLSVTDN 325

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G+   +L +  + F ++  ++     GTGLGL +AK +V+ + G+ +  S   +G+  
Sbjct: 326 GIGIPATDLSRIFERFYKVDRARTRNAGGTGLGLAIAKHLVEGHGGRIWATSIEGEGSTF 385

Query: 805 EIIFPLY 811
            +  P+ 
Sbjct: 386 YLTLPVA 392



 Score = 38.1 bits (87), Expect = 5.8,   Method: Composition-based stats.
 Identities = 32/340 (9%), Positives = 84/340 (24%), Gaps = 31/340 (9%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +DA   ++ I+ +  + +       IG  L  ++    +D    + + +        ++ 
Sbjct: 57  VDADRRVRYINRQAEELLNLSHTISIGQGLITLARDYQVDA--MVEEAIASAEP--RESI 112

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
             P+        + L A+P+    R        G + + R       L +      +++ 
Sbjct: 113 FQPL---GRQRTLRLRAIPLDDGAR--------GALLLVRDVTQLSLLERARRDLVANVS 161

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
              +   +  K   +      PPP   +  ++             L  E + L   E   
Sbjct: 162 HELRTPLASMKLLVETLQSDPPPP---VAKRMLDQIAQEVDAITQLVEELHELAQIESGR 218

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
           +  Q     +        +      +            + P      +    +    +  
Sbjct: 219 VALQLVPAPLAPLVARTIERIRPQMDRKHLQMTTDVPDDLPQALIDCNRVGQVLLNLLHN 278

Query: 329 C----PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK-- 382
                P    V     +                        LS   +   +   +  +  
Sbjct: 279 ASKFTPEGGCVSIAARVITVGDGSPPPPGLPPSHAPGQWLLLSVTDNGIGIPATDLSRIF 338

Query: 383 -------PVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
                        +  T +  +   H ++ +     A + 
Sbjct: 339 ERFYKVDRARTRNAGGTGLGLAIAKHLVEGHGGRIWATSI 378


>gi|257439704|ref|ZP_05615459.1| putative response regulator receiver domain protein
           [Faecalibacterium prausnitzii A2-165]
 gi|257197844|gb|EEU96128.1| putative response regulator receiver domain protein
           [Faecalibacterium prausnitzii A2-165]
          Length = 1070

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 88/569 (15%), Positives = 194/569 (34%), Gaps = 40/569 (7%)

Query: 272 QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE---TVDK 328
           +      +      +     ++     +       ++                       
Sbjct: 225 EYRLKMQDGQYQWFRASAEVIRRLDGSANRIAGIISNIDAEKRSRMQAQRAAAFHRAFTS 284

Query: 329 CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK------ 382
             +  +  +     +            + +      GL        + + +         
Sbjct: 285 ANLCEYYVNLEKNTFDTFKVEPSLM-TAFEQNYTWDGLVRFFVDNYVVEEDKKTVTNFYN 343

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
              +    +       +   I  + E       +   +       M       E      
Sbjct: 344 RAYITEKLKGLETELRQECRIVLDGEERWVSNVVMRGEIEDSEYAMIFLRDITESKAETA 403

Query: 443 NKRKMEIEVMQLCSILEATS---DGIAIIN-REGIILSTNRAVSKLFG--------YPVE 490
            + +M  +   +  ++++     D   + +         N     ++             
Sbjct: 404 RRMQMASDNASMDLLIQSMVRLLDRFVVCDLENDRYRFYNLQGDMIYAPTGAYHDFVEQV 463

Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL--GSTKEEKLLSLRIIIKKL 548
            +  K        +      +    +   +     E  ++   + K    + L     KL
Sbjct: 464 AVRYKTLEPLAAMDALFSPENIRKNLQGENDIYKFEYCSIDENTYKIGSFIPLEWDGTKL 523

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE----SSHKSDFLARVSHEIRTPLTAII 604
             +    L   D+S+ K+ + +   A K A +     S  K++FL+ +SH+IRTP+ AI+
Sbjct: 524 VKA---LLASMDVSQEKKAEIESHKALKEAYRAAENASRAKTEFLSNMSHDIRTPMNAIV 580

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           G + +            + +E    I +S   +L ++N++LD+++IESG+M+L  E  SL
Sbjct: 581 GLTAIAGANI---ESQDKVVECLGKITKSSRHLLGLINEVLDMARIESGRMSLAEEDFSL 637

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGG 723
            E V   ++L +   +E    +     +     +  D   ++Q+ +N++SNA+ +TP GG
Sbjct: 638 PELVDNLLTLTKPVIDEHHHQLEVHIEHIEHEAVCGDSLRIQQVFVNLMSNAVKYTPDGG 697

Query: 724 QIIISTTHTSNEE-----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
            I ++     N           + D G+GMT    +   +PF +  + +  + +GTGLG+
Sbjct: 698 NITLTIKEKPNGFSELGCYEFSIEDNGIGMTPEFQKIMFEPFSRADDHRTTKVQGTGLGM 757

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEII 807
            +A+ +V+   G   + S P KGT I + 
Sbjct: 758 AIARNIVNLMNGDIQVESAPNKGTKITVT 786


>gi|254414213|ref|ZP_05027980.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196178888|gb|EDX73885.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 531

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 83/394 (21%), Positives = 163/394 (41%), Gaps = 30/394 (7%)

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            ++ +     Q  S++E   + I  I+  G     + A +KL G+ +E+ L  PF   + 
Sbjct: 144 AEKALRRSEQQYRSVVENVKEVIFQIDPNGNWEFLSPAWTKLMGFTLEETLGTPFLECVH 203

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTM 558
            +   +       IL        ++     TK      L I       ++      S  +
Sbjct: 204 PDDCQLQKELWQSIL-TGANVGFQREIRYVTKTGATRWLEIHAHASQVTNGKFTGLSGIL 262

Query: 559 HDISEW--------------------KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
           HDI+E                     ++ +  +  A +  ++    KS  +  +SHE RT
Sbjct: 263 HDITERIYAAALEKEKIRLETEIIERQRSETMIRQALEKEKELGELKSHIITTISHEFRT 322

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
           PLT I   SE +       L   + +++   I      +  ++ND++ I + E+G+M  +
Sbjct: 323 PLTTIQSSSE-LLKLYDKKLTEDKKLKHFQKIGLCVEHITQLLNDVILIGQSEAGQMKFN 381

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718
              + + +   + I   Q   +  R  ++   A +  + L D   +++   ++LSNA+ +
Sbjct: 382 PISLEVADLCHDLIEEFQSNLDP-RYTLKVFIAESPIKGLFDEAMLRKSLNHLLSNAVKY 440

Query: 719 TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
           +P GG I       S+ +V ++++D G+G+ + +  +  + F +   S      GTGLGL
Sbjct: 441 SPKGGTITFQLGCHSD-KVTVQIQDEGIGIPSIDQSRLFESFYR--GSNISTIGGTGLGL 497

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
            + K  VD + G+  I S    GT + +  P+  
Sbjct: 498 AIVKKYVDLHGGQIQIESEVGIGTTVTVTLPINQ 531



 Score = 68.5 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 19/135 (14%), Positives = 46/135 (34%), Gaps = 2/135 (1%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + ID +G  + +S    K +G    + +G    +            +   +        
Sbjct: 166 IFQIDPNGNWEFLSPAWTKLMGFTLEETLGTPFLECVHPDDCQLQKELWQSILTGANVGF 225

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +  +  +  T     +++ A      N +F+G  G  I+H         AL K   +  +
Sbjct: 226 QREIRYVTKTGATRWLEIHAHASQVTNGKFTGLSG--ILHDITERIYAAALEKEKIRLET 283

Query: 206 HLHEIKKGHSSVEKE 220
            + E ++  + + + 
Sbjct: 284 EIIERQRSETMIRQA 298


>gi|121705968|ref|XP_001271247.1| sensor histidine kinase/response regulator, putative [Aspergillus
            clavatus NRRL 1]
 gi|119399393|gb|EAW09821.1| sensor histidine kinase/response regulator, putative [Aspergillus
            clavatus NRRL 1]
          Length = 1943

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 105/685 (15%), Positives = 223/685 (32%), Gaps = 85/685 (12%)

Query: 196  LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255
             G  L+   S     K G+ +V+       S+         +NK+S   +  A       
Sbjct: 792  AGAALNPGESPGPSAKSGNEAVDSYFNVQRSKSVRDALTHHRNKLSKPKKTAASTPTSPG 851

Query: 256  TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
                     EESS+ +        L +          Q+ S+ +     +          
Sbjct: 852  RVWEKRSVGEESSVQDPTVAELSPLQESKVAPVISPTQHTSRHASATAFYAQLQR-ELPR 910

Query: 316  DEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
               + +    ++  P+  F+     G + + N  F    + +  +        +      
Sbjct: 911  PFSDTIAQLMLNSVPLHLFLAKPQSGEVIWTNSKFDAYRRSQPQEQKLRDPWQN----IH 966

Query: 374  KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
                 +  +         +      R+     +        F      +   E +   G 
Sbjct: 967  PSEREHVSQEWANALRTGSQFTERVRVKRF-NDDAAYRWFIFRANPLLSSTGEVLYWIGS 1025

Query: 434  EPEDVDTRINKRKMEIEVMQL------CSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
              +  +  I + K   E  +        +   +    +        ++  N       G 
Sbjct: 1026 FLDIHEQHIAELKAVQERQKFAIDAKYRAFSNSIPQVVFEATEHRGLIFVNEQWHLYTGQ 1085

Query: 488  PVEDILRKPFTVFLEQNT-----------------------------------------P 506
             +ED L   F   +  +                                          P
Sbjct: 1086 KLEDALNFGFAKHIHPDDLEKCSSLSSYLSEAPRKPSAESNGAAEDAGKEKVSSPGRHFP 1145

Query: 507  SVMNHYLTEILSLDLRQT---------LEKITLGSTKEEKLLSLRIIIKKLP------FS 551
              +   L E++ L +                    +K        + + ++         
Sbjct: 1146 HGVTPALDELVRLGIASVQKDENGRVFYSTEIRLRSKGGDYRWHLVRLVRVETSSFGSGE 1205

Query: 552  SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
            + +  T  DI++ K  + +L+ A +    +   K+ F + +SHEIRTPL  I+G    I 
Sbjct: 1206 ASWYGTCTDINDRKNLERELNRAMQQLNHQMESKTKFFSNMSHEIRTPLNGILGTIPFIL 1265

Query: 612  NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
            + +             + I  S   + ++V+++LD+S++E+GKM+L      +   + + 
Sbjct: 1266 DTQLDT----DQRRMLDTIQNSSTNLRELVDNILDVSRVEAGKMSLVNSWFHVRSVIEDV 1321

Query: 672  ISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
            I  V   A +K + +      ++P  ++ D   ++Q+ +N++ NA+ FT  G ++ I  +
Sbjct: 1322 IDTVSSRALDKGLELNYLMDVDVPPMVIGDRFRIRQVLINLVGNAVKFTAQG-EVYIRCS 1380

Query: 731  H---------TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
                       +   +   V DTG G +  + E+ M+ F Q+  +   +  G+GLGL L+
Sbjct: 1381 MYCDVSVPLKETELMLNFDVVDTGKGFSARDSERLMQRFSQLGENASQQNAGSGLGLFLS 1440

Query: 782  KAMVDANMGKFYIFSTPAKGTLIEI 806
            K +V+ + G+    S   +G     
Sbjct: 1441 KQLVEMHGGRLTPSSKEGQGAKFSF 1465


>gi|330977289|gb|EGH77244.1| PAS protein [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 595

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 89/427 (20%), Positives = 170/427 (39%), Gaps = 28/427 (6%)

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK--R 445
            + R      A         E    +T  P   A +      + GI  E +         
Sbjct: 193 IARRFGAPIEALAKAADRIGEGDYEVTL-PISSAAEMNLLTRRFGIMAEALRQHQATNVD 251

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           ++     +L ++L++  DG+ +I+R+G +   N    +  G+    +             
Sbjct: 252 ELLAGQQRLQAVLDSIDDGLLMIDRQGHLEHLNPVAQRQLGWDESRLGHSLGEALGRPEL 311

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISE 563
              ++  L         + L         E +LL+  +              + +HD++E
Sbjct: 312 DEQLHLVLRGGTLERAPEDLAIEI---DGESRLLTYSMTPVSHTKGHILGAVMVLHDVTE 368

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            +  +                +S+F+ R SHE+RTP+T  +  +  +  +R       R 
Sbjct: 369 QRAFE--------------RVRSEFVLRASHELRTPVTG-MHMAFGLLQERLHFAPESRE 413

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            +  N +      ++ ++NDLL+ S+ ++G   L   P S++  + EA    +  A E+ 
Sbjct: 414 ADLLNTVTEEMQRLMQLINDLLNFSRYQNGLQKLKLAPCSIETLLQEAKVRFEDQAQEQD 473

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
           I++       +PR+ AD   ++++  N+L NA+  TP  G I +       E  I+ V D
Sbjct: 474 IVLMLDMQEPMPRLHADQSQLERVLDNLLDNALRHTPPNGLIRLQ-ARRHGERAIISVED 532

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
            G G+   +  +  +PF Q+      +  G GLGL L K +V  + G+  ++S P +GT 
Sbjct: 533 NGEGIAYGQQGRIFEPFVQV----GRKKGGAGLGLALCKEIVQLHGGRMGVYSRPGQGTQ 588

Query: 804 IEIIFPL 810
             +  PL
Sbjct: 589 FYMALPL 595



 Score = 45.0 bits (105), Expect = 0.059,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 69/241 (28%), Gaps = 9/241 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G+L+ ++    + +G    + +G  L +      +D       L+ R  T      
Sbjct: 274 IDRQGHLEHLNPVAQRQLGWDESR-LGHSLGEALGRPELDEQ---LHLVLRGGTLERAPE 329

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
              IE       +  +  P+        G     ++H          +  R +      H
Sbjct: 330 DLAIEIDGESRLLTYSMTPVSHTKGHILGA--VMVLHDVTEQRAFERV--RSEFVLRASH 385

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           E++   + +      +  +    P  R  + ++++TE    +   L  +       +   
Sbjct: 386 ELRTPVTGMHMAFGLLQERLHFAPESREADLLNTVTE-EMQRLMQLINDLLNFSRYQNGL 444

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
              +    +I       K  F                   P L A   + E +    +D 
Sbjct: 445 QKLKLAPCSIETLLQEAKVRFEDQAQEQDIVLMLDMQEPMPRLHADQSQLERVLDNLLDN 504

Query: 329 C 329
            
Sbjct: 505 A 505


>gi|224535763|ref|ZP_03676302.1| hypothetical protein BACCELL_00627 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522623|gb|EEF91728.1| hypothetical protein BACCELL_00627 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 1031

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 118/740 (15%), Positives = 235/740 (31%), Gaps = 48/740 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMI-GMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144
            W  D +  L   S+      G    + +      +            I   +     + 
Sbjct: 172 LWEFDVNSRL-FFSDN-EPLNGYDKSRPLSIDLYLETIHPEDRKEMVSIMQRMNSGKDFS 229

Query: 145 G-KTTLWPIEGTNLYVPIDLAALPI-YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
                   + G++ +    +   P  YS + +   + G       R +N      K+L  
Sbjct: 230 FTFEGRIKLFGSSEWQYCFVNGSPYSYSESGQVLKYVG------TRKNNTDIHKKKQLLD 283

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
           K  +   +      VE     IF  +            ++       +   ++     + 
Sbjct: 284 KILNNIPLSIHIKDVEDNFRYIFCNEESKRMFGTSEDTTTYDVMDEEQVARIQKTDLEVF 343

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
            S    L  +        +  +                  L+ R   SL         + 
Sbjct: 344 NSGSPYLGLE---RVNLKDGRSYDTIVRKSVIEDDGKRLLLNTRWDQSLQNELKRRAQIL 400

Query: 323 PETVDKCPIPFFVYSHG--NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
             T+       + +      + +    F  +TK  S         +   L      D   
Sbjct: 401 SITLGAMNAFTWFFEPDKNRISFG-EGFNEVTKKAS-----EICSVEKFLSCVHPDDKQK 454

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP--QNGIEPEDV 438
               +    ++                            + +   +       G+     
Sbjct: 455 FHDSLQAVVEQDNGIWELEYQLDLNGDGVYQWWQTRGMLETSTLNDAPYKYMFGMTICID 514

Query: 439 DTRINKRKMEIEVMQL-------CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
             +  +  +     +L         +L  T+ G+A I R+  +   N +           
Sbjct: 515 AHKQAELTLLKNKEELKKLVTLNELVLNNTNSGLAYITRDYRVQWENVSSCSKSLSFEAY 574

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
              +         T       L+        + ++           ++ +      L   
Sbjct: 575 KQGELCYKSAHNRTSPCEECILSRAFQSRQTELIKFKL----DNAHVVEVYGTPVFLEDG 630

Query: 552 --SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                 + + D++E ++   +L  AK  AE+    KS FLA +SHEIRTPL AI+GFS +
Sbjct: 631 TADGIVIRVDDVTEREEMIKELQIAKMHAEQSDKLKSAFLANMSHEIRTPLNAIVGFSGL 690

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           +         +    +Y   I+ +  ++L +++D+LD+SK+E+G + L +E   L +  +
Sbjct: 691 MMY-----ASDEEKEDYMQIINNNNEMLLKLISDILDLSKLEAGSVELKYEEFDLTDYFN 745

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
              + ++  A   +I I          +  D   V QI  N ++NAI +T  G  I +  
Sbjct: 746 SMFASMKQRATNPKIQIVAVNPYQHCLVTLDRNRVAQIITNYVTNAIKYTTEG-TIEMGY 804

Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
            +     +   V+D+G+G+ + +  K    F ++        +GTGLGL + KA+ +A  
Sbjct: 805 EYREEG-IYFYVKDSGIGIPDEKKNKVFHRFEKLD----EFAQGTGLGLSICKAIAEAMG 859

Query: 790 GKFYIFSTPAKGTLIEIIFP 809
           G     S   KG+L   + P
Sbjct: 860 GNVGFESEYGKGSLFWALLP 879



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 72/219 (32%), Gaps = 41/219 (18%)

Query: 443 NKRKMEIEVMQL----CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
              K++ +   L     +IL +    +A+ N +G IL  N    ++FG  +E++      
Sbjct: 15  EHVKLQQQYDSLYNQSMTILNSLPVAVAVYNAKGKILYFNERFCRIFGTDMEEMAESHPN 74

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK-------KLPFS 551
           ++       V+   +   +   L  +          +  + ++   I+        +   
Sbjct: 75  IY----DSPVVTDEIKNAIKAGLPISTSFPYDFGKVDGYITTVYTGIRYLECNGQPIRNP 130

Query: 552 SC----YSLTMHDISEWKQEKNKLSHAKK-----------IAEKESSHKSDFLARVSHEI 596
           +     Y + M DI+E  +++  L  ++            +  +   +   F +      
Sbjct: 131 NGELASYVIIMEDITESLEKEEMLRQSRLKTEIAIKTADIMLWEFDVNSRLFFSD----- 185

Query: 597 RTPLTAIIGF--SEVI-KNQRFGPLGNPRYIEYANYIDR 632
             PL    G+  S  +  +     +      E  + + R
Sbjct: 186 NEPLN---GYDKSRPLSIDLYLETIHPEDRKEMVSIMQR 221



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 54/518 (10%), Positives = 133/518 (25%), Gaps = 57/518 (11%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY----- 144
           +A G +   +E   +  G    +M           +  D    I + +K           
Sbjct: 45  NAKGKILYFNERFCRIFGTDMEEMAESHPNIYDSPVVTD---EIKNAIKAGLPISTSFPY 101

Query: 145 --GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
             GK   +          ++    PI + N E + +    I+       +   + ++   
Sbjct: 102 DFGKVDGYITTVYTGIRYLECNGQPIRNPNGELASY--VIIMEDITESLEKEEMLRQSRL 159

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS----LTEYYAHKDDVLKTEK 258
           K     +              +F   + P +   K++  S    L   +      + +  
Sbjct: 160 KTEIAIKTADIMLWEFDVNSRLFFSDNEPLNGYDKSRPLSIDLYLETIHPEDRKEMVSIM 219

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
             + + ++ S   +     +  +   +  +      +  ES + L +      +    + 
Sbjct: 220 QRMNSGKDFSFTFEGRI-KLFGSSEWQYCFVNGSPYSYSESGQVLKYVGTRKNNTDIHKK 278

Query: 319 ENLTPETVDKCPIPFFV---YSHGNLFYANPSFLLLTKYK------SVDDIEIAGGLSTL 369
           + L  + ++  P+   +     +    + N     +           V D E    +   
Sbjct: 279 KQLLDKILNNIPLSIHIKDVEDNFRYIFCNEESKRMFGTSEDTTTYDVMDEEQVARIQKT 338

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
                 S +  +    +   D        R   I+ + +  L  T               
Sbjct: 339 DLEVFNSGSPYLGLERVNLKDGRSYDTIVRKSVIEDDGKRLLLNTRWDQSL--------- 389

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
                         + +++     L   L A +        +   +S     +++     
Sbjct: 390 --------------QNELKRRAQILSITLGAMNAFTWFFEPDKNRISFGEGFNEVTKKAS 435

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
           E    + F   +  +     +  L  ++  D     E         + +         L 
Sbjct: 436 EICSVEKFLSCVHPDDKQKFHDSLQAVVEQDN-GIWELEYQLDLNGDGVYQWWQTRGMLE 494

Query: 550 FS-------SCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
            S                I   KQ +  L   K+  +K
Sbjct: 495 TSTLNDAPYKYMFGMTICIDAHKQAELTLLKNKEELKK 532


>gi|319654330|ref|ZP_08008418.1| hypothetical protein HMPREF1013_05038 [Bacillus sp. 2_A_57_CT2]
 gi|317394030|gb|EFV74780.1| hypothetical protein HMPREF1013_05038 [Bacillus sp. 2_A_57_CT2]
          Length = 552

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 94/515 (18%), Positives = 189/515 (36%), Gaps = 33/515 (6%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
                   E E      ++       F   HG    +N   L L   ++VD         
Sbjct: 60  RDELIASREDEKRLSTLINSMVDFVNFKDGHGRWIESNEFGLKLFNLENVDYKGKRDSEL 119

Query: 368 TLLDAPKLSDNNAIKPV-MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
                         +        +            I            I     +    
Sbjct: 120 AEYTDFYADALRYCETSDEEAWKNGKITRLE---EVIPLQDGTEKTFDTIKVPLFHADGS 176

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
                 I  +  + +  ++ +     Q  S+ E  ++ + + +  G I   N     + G
Sbjct: 177 RQGLVIIGRDITERKHVEKLLAESQQQYKSLFEYNTEIVFMTDLHGTITKVNPQFKAVTG 236

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
           Y  ++ L K     +              IL     +T E     + K    L+++    
Sbjct: 237 YSPDETLGKSINEIIPAPYKMKAIKGFKGILKDKQPKTCEFEF--NHKNGSKLTIQCTAL 294

Query: 547 KL---PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
            L      +       D+++ +Q + +L   +K++        +  A V+HEIR PLT++
Sbjct: 295 PLIVNGQIAGIIGYGKDVTKLRQAEERLRRTEKLSVV-----GELSASVAHEIRNPLTSL 349

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
            GF ++++      L + ++  Y   +    + +  IV +LL ++K +    ++ F    
Sbjct: 350 KGFVQLMQ------LEDEKHQFYYQIMQEELDRINHIVGELLLLAKPQ----DICFTKAD 399

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
           + + +   ISL++  A+   + I     +++  I  +   +KQ+ +NI+ NAI  +  GG
Sbjct: 400 VQKILFNVISLLKTEASMHNVQIEFLLKSDVYMIECEPNQLKQLFINIIKNAIEASSDGG 459

Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
           ++ ++       ++ + V+D G GM+   L +  +PF         + +GTGLGL ++  
Sbjct: 460 KVTVTLQAEDR-QLTILVKDNGCGMSEERLNRIGEPFY------SSKEKGTGLGLTVSFK 512

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFPLY-DTSHPH 817
           +V ++ G  Y  S   KGT   I  P+  +TS P 
Sbjct: 513 IVQSHNGSIYFNSKKGKGTEAVIKLPVRKNTSAPE 547



 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/119 (15%), Positives = 41/119 (34%), Gaps = 6/119 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS-DILHIDPNNHIGDLLKRQNTWY 144
            +  D HG + +++ +     G    + +G  + ++      +        +LK +    
Sbjct: 215 VFMTDLHGTITKVNPQFKAVTGYSPDETLGKSINEIIPAPYKMKAIKGFKGILKDKQPKT 274

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
            +       G+ L +     ALP+   N + +G  G+G               +R +K 
Sbjct: 275 CEFEFNHKNGSKLTIQCT--ALPL-IVNGQIAGIIGYG--KDVTKLRQAEERLRRTEKL 328


>gi|163733036|ref|ZP_02140480.1| hybrid sensory histidine kinase, putative [Roseobacter litoralis
           Och 149]
 gi|161393571|gb|EDQ17896.1| hybrid sensory histidine kinase, putative [Roseobacter litoralis
           Och 149]
          Length = 752

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 99/464 (21%), Positives = 195/464 (42%), Gaps = 36/464 (7%)

Query: 380 AIKPVMLYRSDRTCIAASARLHTI-QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
           A +      ++R      A L    +    ++  ++    E   +      +N       
Sbjct: 8   AQERRSRLAAERLLELKQAELFAANRKLGLHARQLSNEIVETRAEVANVRDENKRV--KS 65

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
           D     +++E    +L   +E  +DG A  + +  ++  N +   +F    +      + 
Sbjct: 66  DLSAAHKQIERVERRLWQSIETINDGFAFYSPDLELIMANNSYLAVFDGLEDMQPGVSYV 125

Query: 499 VFLEQNTPSVM-------NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
             L+  T   +            + +   ++    +  +      + + +   I +    
Sbjct: 126 TVLQFLTEEGIVNIGDMQPAEWRQKMIERVQSAEPEAVIIKLWNNEYIRM---IDRRGPD 182

Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
                   +I+   Q + +L  A+  AE  S  KS FLA +SHEIRTP+  ++G ++V+ 
Sbjct: 183 GDIISLGINITAAVQYEEQLKAARASAEAASRAKSAFLANMSHEIRTPMNGVVGMADVLT 242

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
                   +     Y + I  SG  +L I+ND+LD SKIE+ K+ LH EP +L++++ E 
Sbjct: 243 ETPL----SEEQRLYVDTIKNSGEALLVIINDVLDYSKIEAEKLQLHPEPFNLEKSIHEV 298

Query: 672 ISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
           + L+Q  A +K IL+   ++  +    + D   ++QI  N+L NA+ FT  G  + +  +
Sbjct: 299 LRLLQSIARDKGILLCVDYSLLLTSDFIGDPGRLRQILTNLLGNAVKFTTEGS-VTVRVS 357

Query: 731 HTSNEE-----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
              +E      V +RV DTG+G+    ++     F Q+ + +  + +GTGLGL + K ++
Sbjct: 358 GKPDEATGKVIVQVRVEDTGIGIPEDMIDHVFGEFNQVESERNRQFDGTGLGLAITKQLI 417

Query: 786 DANMGKFYIFSTPAKGTLI------------EIIFPLYDTSHPH 817
               G+ ++ S    G+               +  P+ D +  H
Sbjct: 418 KMMDGQIWLTSEEGVGSCFGFEIALEPPGPVTLTHPVLDPALRH 461


>gi|257142328|ref|ZP_05590590.1| sensory box histidine kinase [Burkholderia thailandensis E264]
          Length = 709

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 97/633 (15%), Positives = 208/633 (32%), Gaps = 28/633 (4%)

Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE 245
             R + D  A   + D          +     ++++                  + S   
Sbjct: 86  EIRKEFDALAPLVQDDPVQQRRLAALRTLLKRKQDELAATIALRKSEGFDAAQAIVSSDA 145

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
                D           T ++     ++                G L      SF Y+  
Sbjct: 146 GKIFMDRARTMVNDMEATVQQQLRALRDRARATRDVAIAVGLASGLLTLVVCVSFGYVMR 205

Query: 306 RNHPSLSAYFD---EGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIE 361
           R     SA  D       L   T+             G + + N     +T   +   + 
Sbjct: 206 RLLLVESAASDDLFAQRELLHVTLASIGDGVIATDVDGRITFFNRVAEEMTALAADAVVG 265

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                  L     L+      P  +    +   A       +       L +        
Sbjct: 266 QPIEQ-VLTFRHALTQRVIDNPARVAVERKRIAALPVHTRFV-GRGGGELPVDGNAAPTF 323

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
           +   + +    +  +  +    + +  +        +EA  + + ++NREG I+  N   
Sbjct: 324 DANGKLVGAVLVVRDVSERERAEERFRLA-------VEAAPNAMIMVNREGKIVLVNSQA 376

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLL 539
            K F Y   D++ +   + + +   +    +          + +   +   G  ++    
Sbjct: 377 EKFFDYVRGDMIGQGIDMLVPERFRAGHATHRGAFFGKPDARPMGAGRDLFGLRRDGSEF 436

Query: 540 SLRIIIKKLPFSSCYSLT--MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
            + I +  +  S    +   + DI+  K+ +++L    +   + +     F    SH+++
Sbjct: 437 PVEIGLNPITTSEGAFVLCSITDITARKRAEHELRRRSEELARSNQDLEQFAYVASHDLQ 496

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
            PL A+ G  ++++ +  G L + R  E+  +       +  +++DLL  S++  G++  
Sbjct: 497 EPLRAVAGPLQLLQRRYQGQL-DARADEFIGHAVDGATRMQSLIDDLLSYSRV--GRLED 553

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
             +PV  +  + EA+  +     E    I       +P +      +  +  N++ NAI 
Sbjct: 554 ARQPVDCERVLDEALRNLSAAIRESGAQITHD---RLPIVHGIAAQLVLLFQNLIGNAIK 610

Query: 718 FTPSG--GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           F       +I +      +  V  RVRD G+G+     E+    F ++    +    GTG
Sbjct: 611 FRSKERIARIHLEADTRDDAWV-FRVRDNGIGIDPQYFERIFLIFQRLH--TRREYPGTG 667

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           LGL L K +V+ + G+  + S P +GT      
Sbjct: 668 LGLALCKRIVEHHGGRIAVESEPGRGTTFSFAL 700



 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/366 (9%), Positives = 80/366 (21%), Gaps = 24/366 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV------SDILHIDPNNHIGDLLKRQNT 142
            D  G +   +    +     A  ++G  +  V           ID    +    KR   
Sbjct: 239 TDVDGRITFFNRVAEEMTALAADAVVGQPIEQVLTFRHALTQRVIDNPARVAVERKRIAA 298

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
               T      G    +P+D  A P +  N +  G     +V             +   +
Sbjct: 299 LPVHTRFVGRGGG--ELPVDGNAAPTFDANGKLVGA--VLVVRDVSERERAEERFRLAVE 354

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
              +   +      +                  +   +  L               +   
Sbjct: 355 AAPNAMIMVNREGKIVLVNSQAEKFFDYVRGDMIGQGIDMLVPERFRAGHATHRGAFFGK 414

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
                    ++ F           +        S+ +F   S  +  +      E    +
Sbjct: 415 PDARPMGAGRDLFGLRRDGSEFPVEIGLNPITTSEGAFVLCSITDITARKRAEHELRRRS 474

Query: 323 PETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD-NNAI 381
            E                       F  +  +   + +    G   LL        +   
Sbjct: 475 EELARSNQDL-------------EQFAYVASHDLQEPLRAVAGPLQLLQRRYQGQLDARA 521

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
              + +  D      S     + ++R   L     P +      E +        +   +
Sbjct: 522 DEFIGHAVDGATRMQSLIDDLLSYSRVGRLEDARQPVDCERVLDEALRNLSAAIRESGAQ 581

Query: 442 INKRKM 447
           I   ++
Sbjct: 582 ITHDRL 587


>gi|156741626|ref|YP_001431755.1| multi-sensor signal transduction histidine kinase [Roseiflexus
           castenholzii DSM 13941]
 gi|156232954|gb|ABU57737.1| multi-sensor signal transduction histidine kinase [Roseiflexus
           castenholzii DSM 13941]
          Length = 906

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 129/767 (16%), Positives = 259/767 (33%), Gaps = 89/767 (11%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D  G +           G  AF      + D          +      +     +  T 
Sbjct: 149 VDQEGMVSLAYVAFED-GGVLAFDHDITDVLDAIKPFDPRKRSWYIAAREAGKPVWVDTY 207

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
              ++     +    AA P+Y RN  F+G  GF ++         +     +D       
Sbjct: 208 ---VDANTKKLTTTCAA-PLYDRNGAFAGVVGFDVL-----LETIQEDILAIDIPPGGSA 258

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
            +      V      +  Q      +   N ++            +   +  +    E  
Sbjct: 259 FLINQRGDVLLHNTLLSRQGQWDQPIATDNLLNDANPQVRTIAGRMTRAEQGV----ERL 314

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV-- 326
             + E+ +       + +   G +   ++ +          SL      G+ +    +  
Sbjct: 315 TLQGEEVYLAFAPISSAEWSVGIVIPVAEVTGLAQQVSEVISLRQEVLSGQIVLVIILCV 374

Query: 327 -----DKCPIPFFVYSHGNLFYANP---SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
                   P    +        A     +   LT             +    +    + +
Sbjct: 375 IVVSVLSMPAASILTRPLRELQAAAQRVAAGDLTYRVPEAGDYEIAHVGHSFNTMTDALH 434

Query: 379 NAIKPVMLYRSD-----------RTCIAASARLHTIQWN----RENSLAMTFIPFEKANQ 423
             I  + L               RT  +   +L  I            A+ ++  ++  +
Sbjct: 435 EKINELELNLRQLAALNEMSNQFRTIGSVREQLDAIPKGVCACLGFERAVLYLIEQRHLR 494

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
                   G   +      +   + +E   + + +  +   + I +        N   + 
Sbjct: 495 AVSAWINTGDADQIARLLADAASIPLESDTMSADVVRSGQAVIISDVAPHSAPANAVQAP 554

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           LFG   + ++      F               +                          +
Sbjct: 555 LFG-REKRVIGLLVASFDAAGRAPTPRDAAQLMTFAG----------------------M 591

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
               L  +  Y+     +++      +L  A   A++    K  FLA VSHE+RTPL AI
Sbjct: 592 SGLALENTMLYAGLERQVAQRT---AELRAALARAQEADRLKGQFLAAVSHELRTPLNAI 648

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           IGFS V+ ++  GP+  P   E    I+R+G  +L ++++LLD+++IE+GK++L   P+ 
Sbjct: 649 IGFSTVMLDEIDGPIT-PLQREDLKIINRNGRFLLHLIDELLDLARIEAGKIDLELAPLD 707

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG- 722
           +   + E    VQ   + ++I +       +P    D   ++Q+ LN+LSNA+ FTP G 
Sbjct: 708 MRALIVEVTETVQGLLHNRQIALNLLLPERLPYACGDAARIRQVLLNLLSNAVKFTPQGS 767

Query: 723 --------------------GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
                               G +I+      +  + + VRDTG+G+   +L +  + F Q
Sbjct: 768 ITVSARCVAAPENHPGATGSGAVIVRNGQRLHPYIAVSVRDTGIGIAAEDLTRIFEAFNQ 827

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           + +    R  G+GLGL +++ +++A+ G+ ++ S P KG++   I P
Sbjct: 828 VRSGN--RQHGSGLGLAISRRLIEAHGGRIWVESEPGKGSVFTFILP 872


>gi|82702416|ref|YP_411982.1| multi-sensor signal transduction histidine kinase [Nitrosospira
           multiformis ATCC 25196]
 gi|82410481|gb|ABB74590.1| multi-sensor signal transduction histidine kinase [Nitrosospira
           multiformis ATCC 25196]
          Length = 570

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 107/495 (21%), Positives = 205/495 (41%), Gaps = 54/495 (10%)

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
           +    GL  L      S + +I  +ML  +D   IA  A    ++   ++ L        
Sbjct: 62  LPDVNGLEFLAALTDESGDVSIPVMMLTGTDNAAIAVEA----MKRGAKDYLIKDLEHQY 117

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI--INREGIILST 477
                             ++ +  + K+     +  S++E     + I  ++     L  
Sbjct: 118 LELLPAVIQRVLSDRRIRLEKKQAEEKLAQAEAKYRSLVETIPAIVYIAALDGSNRFLYV 177

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
           +     + G+  E  L  P  +  + +     +       S      L       T++E+
Sbjct: 178 SSR-INMLGFSAEQWLNDPTILLAQIHPDDRSHALEERAKSRATCAPLRCEYRLLTQDER 236

Query: 538 LLSLRIIIKKLPFSSCYSLTM--------------------------------------- 558
           +L  R     +   S  SL +                                       
Sbjct: 237 VLWFRDEANVVRDESGRSLFLQGILVDITESKQAEEELKQHRFRLEELVAKRTDELARVN 296

Query: 559 ----HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+  K  + +L  AK  AEK +  KSDFL+ +SHE+R+PL  ++GF++++  + 
Sbjct: 297 EELRRDITHRKLIEEELIKAKTEAEKANLAKSDFLSSMSHELRSPLNVMLGFAQLM--ES 354

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
             P      +     I+ +G  +L+++N +LD++ IESGK+ +  EP+ + E ++E+ ++
Sbjct: 355 SSPPPTFTQMTMLKEINSAGWYLLELINKILDLAAIESGKLIVAQEPMCIGEVMAESRTM 414

Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
           V+  A E+ I +    ++++   + AD   VKQ+ +N+LSNAI +   GG + +S + T 
Sbjct: 415 VEPQAQEQNIRLIFPPSSDMNFFVRADRTRVKQVLINLLSNAIKYNREGGMVEVSCSMTK 474

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
              + + VRDTG G+   +L +  + F ++   +    EGTG+GL + K +V+   G   
Sbjct: 475 PGRLRISVRDTGTGLPPEKLTQLFQQFNRL-GQEAGSVEGTGIGLVVTKQLVELMGGSIG 533

Query: 794 IFSTPAKGTLIEIIF 808
           + ST   G++     
Sbjct: 534 VESTVDVGSVFWFEL 548



 Score = 55.4 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/299 (9%), Positives = 83/299 (27%), Gaps = 14/299 (4%)

Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS 242
           ++ V     D  A  + L +   +   + +  S  E  +     +            V+ 
Sbjct: 8   VLLVEDDAVDRMACRRALARDPDYEFVLSEAESGREGLQLAHEQKPDCVLLDYHLPDVNG 67

Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302
           L    A  D+        ++ +   +     +        Y  K              + 
Sbjct: 68  LEFLAALTDESGDVSIPVMMLTGTDNAAIAVEAMKRGAKDYLIKDLEHQYLELLPAVIQR 127

Query: 303 LSHRNHPSLSAYFDEG-----ENLTPETVDKCPIPFFVYSHG---NLFYANPSFLLLTKY 354
           +       L     E      E      V+  P   ++ +        Y +   + +  +
Sbjct: 128 VLSDRRIRLEKKQAEEKLAQAEAKYRSLVETIPAIVYIAALDGSNRFLYVSSR-INMLGF 186

Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
            +   +         +   ++  ++    +      R   A     + +    E  L   
Sbjct: 187 SAEQWL-----NDPTILLAQIHPDDRSHALEERAKSRATCAPLRCEYRLLTQDERVLWFR 241

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
                  ++   ++   GI  +  +++  + +++    +L  ++   +D +A +N E  
Sbjct: 242 DEANVVRDESGRSLFLQGILVDITESKQAEEELKQHRFRLEELVAKRTDELARVNEELR 300


>gi|153869210|ref|ZP_01998873.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
 gi|152074257|gb|EDN71132.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
          Length = 1134

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 80/369 (21%), Positives = 160/369 (43%), Gaps = 29/369 (7%)

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
           +   +++ +  ++  + E         ++   +    +       +  E++  +   +  
Sbjct: 322 VQSEELKAQQEEMQQVNEELQ------DQREQLQH--KQAE--LKHNNEELQSQTEELQS 371

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDI 561
           +          L +       +T E     +  ++K  +L                    
Sbjct: 372 QSEELQTQQEELKQTNEELEERTKELERQKTDMQQKNFALEQTQV--------------- 416

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
            E ++ +  L       E  S +KS+FLA +SHE+RTPL +++  ++++ N + G L + 
Sbjct: 417 -EMQKTQVALETKANELELASRYKSEFLANMSHELRTPLNSLLILAQLLANNKPGNLTD- 474

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
           + IEYA  I  +G  +L ++ND+LD+SK+E+G++ +H   +SL   +       +  A +
Sbjct: 475 KQIEYAKTIHSAGADLLTLINDILDLSKVEAGQVEIHANDISLTNLLETIEQKFRPIAEQ 534

Query: 682 KRILIRTSFANN-IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
           + +  + + A   +  +  D + +KQI  N+LSNA  FT  G  I +    +  + +   
Sbjct: 535 QELNFQITIAEESLTTLYTDGQRLKQILNNLLSNAFKFTQQG-NIKLIVQKSEADFISFS 593

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V DTG+G+   +     + F Q+  S Q R  GTGLGL +++       G+  + S   K
Sbjct: 594 VSDTGIGIPQEKQNIIFEAFQQVDGSNQRRYGGTGLGLSISRQFARLLGGEITLHSEEGK 653

Query: 801 GTLIEIIFP 809
           G+      P
Sbjct: 654 GSTFTFSLP 662


>gi|293413652|ref|ZP_06656301.1| two-component system [Escherichia coli B185]
 gi|291433710|gb|EFF06683.1| two-component system [Escherichia coli B185]
          Length = 431

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 73/427 (17%), Positives = 151/427 (35%), Gaps = 37/427 (8%)

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             +L       I     L  + W     L +         +        G+    +  + 
Sbjct: 33  WFLLASVTGLLIWHFWNLLRLSW----WLWVDRSMTPPPGRGSWEPLLYGLHQMQLRNKK 88

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            +R++   + +  S  E+  D + +   EG I   N    ++ G    +   +     L 
Sbjct: 89  RRRELGNLIKRFRSGAESLPDAVVLTTEEGGIFWCNGLAQQILGLRWPEDNGQNILNLLR 148

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
               +               +   +         + L +R++           +   D++
Sbjct: 149 YPEFTQYL----------KTRDFSRPLNLVLNTGRHLEIRVMPYTHKQ---LLMVARDVT 195

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  Q +                + +F A VSHE+RTPLT + G+ E++  Q        +
Sbjct: 196 QMHQLEG--------------ARRNFFANVSHELRTPLTVLQGYLEMMDEQPLEGAVREK 241

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                + +      +  +V  LL +SKIE+   +L  E V +   +       Q  + +K
Sbjct: 242 A---LHTMREQTQRMEGLVKQLLTLSKIEAAPTHLLNEKVDVPMMLRVVEREAQTLSQKK 298

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           +        N + ++  +   ++    N++ NA++ TP G  I +      +      V 
Sbjct: 299 Q-TFTFEIDNGL-KVSGNEDQLRSAISNLVYNAVNHTPEGTHITVRWQRVPHG-AEFSVE 355

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G G+    + +  + F ++  ++  +  G+GLGL + K  V+ +  +  I ST  KGT
Sbjct: 356 DNGAGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHAVNHHESRLNIESTVGKGT 415

Query: 803 LIEIIFP 809
               + P
Sbjct: 416 RFSFVIP 422


>gi|218233298|ref|YP_002367368.1| hypothetical protein BCB4264_A2659 [Bacillus cereus B4264]
 gi|218161255|gb|ACK61247.1| hypothetical protein BCB4264_A2659 [Bacillus cereus B4264]
          Length = 595

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 88/501 (17%), Positives = 178/501 (35%), Gaps = 41/501 (8%)

Query: 314 YFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
              + E      +   P+    +  +G+    N    ++T Y + + I     L  L   
Sbjct: 107 LLSQKEEELHTILQNMPVMVDALDYNGDFVLWNRECEIVTGYTAEEIIGNPNALQLLYPD 166

Query: 373 PKLSDNNAIKPVM----LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
                    K +         +      +  + TI W+                      
Sbjct: 167 HNYRHQIQKKFLTCGKNFRDWEMHLTCKNGEIKTIMWSN-----------ISEQFPVTGY 215

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
               +  +    +  + +++ +  +L  I +A  D   +   +G I+         F  P
Sbjct: 216 SYWAVGVDITHLKAIEEQLKQQTSELELIFKALPDLCFLTEDDGTIIDYKAGSPTKFYVP 275

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            E  + K F   L  +        + ++        +E           +         L
Sbjct: 276 AEAFMGKKFYEVLPTSVAQQFQEAINQVKEKGTNVIVEYPLTL---NGSIDFFEARCLPL 332

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                  + + DI+E K+ +  L+ +  +A           A V+HE+R PLT I GF +
Sbjct: 333 LHDK-IMIIVRDITERKKTEELLNKSDTLA-----AIGQLAAGVAHEVRNPLTVIKGFIQ 386

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
                    +      +Y + +      +  I+ + L I+K +     ++ E  ++ +  
Sbjct: 387 ------LFQINKEDQEKYFDLMLSEIERIEAILQEFLAIAKTD----EINTEKKNIYQIF 436

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
              +SL+   A    I +     +    I      +KQ+ +NIL N+I   P+GG+I I 
Sbjct: 437 KNVVSLMNTKAIMTNIQVELFTDDKDIIIECSENQLKQVFINILQNSIEAMPNGGEISIH 496

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
               +++ VI+ V D G+G+    +++  +PF         + +GTG+GL L+  +++++
Sbjct: 497 IKEINDDGVIIHVIDEGIGIPEERIKRLGEPFY------STKEKGTGIGLMLSYKIIESH 550

Query: 789 MGKFYIFSTPAKGTLIEIIFP 809
            G   I S    GT + I  P
Sbjct: 551 QGTISIMSEVGVGTTVTIYLP 571


>gi|225018277|ref|ZP_03707469.1| hypothetical protein CLOSTMETH_02215 [Clostridium methylpentosum
           DSM 5476]
 gi|224948974|gb|EEG30183.1| hypothetical protein CLOSTMETH_02215 [Clostridium methylpentosum
           DSM 5476]
          Length = 1192

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 118/755 (15%), Positives = 252/755 (33%), Gaps = 58/755 (7%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVS----DILHIDP-NNHIGDLLKRQNTWYG 145
                  I+  +   +G  + +     +             D  +  + + LK +  +  
Sbjct: 166 PDFPFYFINRRMLDYLGYASEEEFVADIHGFISNCMHPDDRDAVDTAVSEQLKEKGEYIV 225

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR-ALGKRLDKKF 204
           +  +   +G+  Y+ +      + + N   +      +     +    +  +    +   
Sbjct: 226 EYRMKKKDGS--YIWVHDVGRRMTAENGRPA---ISSVCIDITLQKQAQNEVLHIYNNIP 280

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
             +   +        E  D   +             + ++     +D  +  ++      
Sbjct: 281 GAVFRCRFDDDFSVIEANDGLFEFLGYTREEFAEMGNRMSAVIYPEDLEVMAQRLNEQLE 340

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
             +++  +      +             Q    E + Y    +        +  + L  E
Sbjct: 341 SGNTIQNENRLICKSGVVKWISIKAQLFQEEDGERYFYCVFVDISDEKQLQERVKELYEE 400

Query: 325 TV----DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDD-------IEIAGGLSTLLDAP 373
            +    +       +   G +               V         +E    L+T    P
Sbjct: 401 ELAYFAELSSSTGSIQ--GRINVTQDRVETYLSTSEVAIASVGTSYLETVESLATSAVDP 458

Query: 374 KLSDNNA---IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
              +       +  +L       +         + +       T +      +  + +  
Sbjct: 459 AYGEKIRCQLDREKVLGDYAAGKVDYHFEFLRRRNDDGAFWGSTNLRTCLNPETGDII-I 517

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPV 489
                +  + ++ +  +  ++ QL        D I  I+ ++G     +    +      
Sbjct: 518 FFYTFDITEQKLQEI-LLSKITQLGY------DIIIEIDLQQGTHRLVSFQSERTDSISP 570

Query: 490 EDILRKPFTVFLEQNTPSVMN---------HYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
               +K      E++                Y+ + L  +   T      G     ++  
Sbjct: 571 RGEFQKEIRAIAEEHMDQASRQEYFQKLDFDYMKKHLEKEDSYTFVVEIKGEDGSMRVKR 630

Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNK----LSHAKKIAEKESSHKSDFLARVSHEI 596
            ++            +   D+++  +++ +    L+ A   AE+ ++ KSDFL+R+SHEI
Sbjct: 631 FQVFWI-DRDLERVCIARADVTDVVRQEQRQKEELAAALVAAEQANAAKSDFLSRMSHEI 689

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTP+ AIIG S +          + +  +  + I  S   +L ++ND+LD+S+IESGK+ 
Sbjct: 690 RTPMNAIIGMSTIAAQSIG---DDEQVEDCISKIGISSRFLLSLINDILDMSRIESGKLL 746

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNA 715
           L  + + ++E +S   S+    A  K +         +      D   ++QI +NILSNA
Sbjct: 747 LKSDKIPIEEFLSGISSICYAQAAAKGVEYECIVDPVLDDYYIGDTMKLQQILINILSNA 806

Query: 716 IHFTPSGGQIIISTTHTS----NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           I FT  GG++  S +       + E+   + DTGVGM+   L    +PF Q         
Sbjct: 807 IKFTGEGGKVTFSASQRRKTKNDAELRFIINDTGVGMSEEFLPHIFEPFSQESTGTTALY 866

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
            GTGLGL ++K +VD   GK  + S    GT   +
Sbjct: 867 GGTGLGLAISKNIVDLMDGKITVRSIKGIGTEFTV 901



 Score = 43.9 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 25/184 (13%), Positives = 52/184 (28%), Gaps = 10/184 (5%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKM--IGMRLCDVSDILHIDP-NNHIGDLLKRQN 141
           F    D    + E ++ L + +G    +   +G R+  V     ++     + + L+  N
Sbjct: 284 FRCRFDDDFSVIEANDGLFEFLGYTREEFAEMGNRMSAVIYPEDLEVMAQRLNEQLESGN 343

Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHV-----NRVDNDPRAL 196
           T   +  L    G  +   I + A      + E   +  F  +        RV       
Sbjct: 344 TIQNENRLICKSG--VVKWISIKAQLFQEEDGERYFYCVFVDISDEKQLQERVKELYEEE 401

Query: 197 GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256
                +  S    I+   +  +       S           + + ++        D    
Sbjct: 402 LAYFAELSSSTGSIQGRINVTQDRVETYLSTSEVAIASVGTSYLETVESLATSAVDPAYG 461

Query: 257 EKYP 260
           EK  
Sbjct: 462 EKIR 465


>gi|229018840|ref|ZP_04175687.1| hypothetical protein bcere0030_33570 [Bacillus cereus AH1273]
 gi|228742461|gb|EEL92614.1| hypothetical protein bcere0030_33570 [Bacillus cereus AH1273]
          Length = 510

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 100/530 (18%), Positives = 197/530 (37%), Gaps = 38/530 (7%)

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTK 353
           +S +   + +                +     +  P     +   G + + NP+   +  
Sbjct: 7   SSTQKKRHPNVSGRLRNHIQNRSLAEMYASLFEHNPDSIISLNLEGVILHINPAAERILG 66

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
           Y S + +E     S L       + +  + V+ Y  +         + +I      SL +
Sbjct: 67  YTSSE-LERKIITSIL-------EAHISEQVLQYIKNTAADNQKEYIVSIYHKDGYSLDV 118

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
                    +         ++P +   RI ++ ++    +L +++ +    +   + EG 
Sbjct: 119 VTKLVPIFVENRLTGVYAIMKPLEKSERI-EKVLQESEKRLRTLMNSMPAFVIFKDHEGR 177

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQ-NTPSVMNHYLTEILSLDLR--QTLEKITL 530
            L  N      F +       K     ++          +  E+  L  +  Q L     
Sbjct: 178 WLEANDYALSCFNFHNVPYRGKRDNELIQYNEAYRESFLHCEEVDELTWQKGQILHGEEF 237

Query: 531 GSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
              +++  L L I    L           +   D++E K+ +  L  ++K+A        
Sbjct: 238 IIHRDDFDLVLSISKVPLFHPDGSRKGLIVMGRDVTELKETEKLLRKSEKLAVV-----G 292

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
              A ++HEIR PLT++ GF  ++      P  N     Y + +    + +  I +  + 
Sbjct: 293 QLTAGIAHEIRNPLTSLKGFLTLL-----HPEINEENKWYVDVMLSEISQMESITSQFMA 347

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706
           +SK +     L     ++   + E ++ +   A    + I     + I  I  D   +KQ
Sbjct: 348 MSKPQ----VLSIHTCNVQALIEEVVTFILPTAVMHSVHIIMDHFDYISDIQCDSNQLKQ 403

Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
           + +NIL NAI   P GG I I T    N+ V +R+ D G G+    + +  +PF      
Sbjct: 404 VLINILKNAIEAMPDGGNIFIQTASLENDFVSIRIMDEGCGIPEERMARLGEPFY----- 458

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
             ++ +GTGLGL +   ++  + GK +I S    GT ++I  P+  T+ P
Sbjct: 459 -SLKEKGTGLGLMMCYKIIQEHHGKLFISSELNIGTTVDIQLPIA-TAQP 506



 Score = 44.2 bits (103), Expect = 0.086,   Method: Composition-based stats.
 Identities = 20/257 (7%), Positives = 66/257 (25%), Gaps = 16/257 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ++  G +  I+    + +G  + ++    +  + +    +            N      +
Sbjct: 48  LNLEGVILHINPAAERILGYTSSELERKIITSILEAHISEQVLQYIKNTAADNQKEYIVS 107

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           ++  +G +  + +    +PI+  NR  +G   + I+           + +  +K+   L 
Sbjct: 108 IYHKDGYS--LDVVTKLVPIFVENR-LTGV--YAIMKPLEKSERIEKVLQESEKRLRTLM 162

Query: 209 EIKKGHSSVEKEKYDIFSQQSPP---------PHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
                    +  +                   P+   ++           +  +   E  
Sbjct: 163 NSMPAFVIFKDHEGRWLEANDYALSCFNFHNVPYRGKRDNELIQYNEAYRESFLHCEEVD 222

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
            L   +   L  +E     +            L +        +      +     ++  
Sbjct: 223 ELTWQKGQILHGEEFIIHRDDFDLVLSISKVPLFHPDGSRKGLIVMGRDVTELKETEKLL 282

Query: 320 NLTP--ETVDKCPIPFF 334
             +     V +      
Sbjct: 283 RKSEKLAVVGQLTAGIA 299


>gi|229025081|ref|ZP_04181508.1| hypothetical protein bcere0029_33850 [Bacillus cereus AH1272]
 gi|228736191|gb|EEL86759.1| hypothetical protein bcere0029_33850 [Bacillus cereus AH1272]
          Length = 516

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 100/530 (18%), Positives = 197/530 (37%), Gaps = 38/530 (7%)

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTK 353
           +S +   + +                +     +  P     +   G + + NP+   +  
Sbjct: 13  SSTQKKRHPNVSGRLRNHIQNRSLAEMYASLFEHNPDSIISLNLEGVILHINPAAERILG 72

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
           Y S + +E     S L       + +  + V+ Y  +         + +I      SL +
Sbjct: 73  YTSSE-LERKIITSIL-------EAHISEQVLQYIKNTAADNQKEYIVSIYHKDGYSLDV 124

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
                    +         ++P +   RI ++ ++    +L +++ +    +   + EG 
Sbjct: 125 VTKLVPIFVENRLTGVYAIMKPLEKSERI-EKVLQESEKRLRTLMNSMPAFVIFKDHEGR 183

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQ-NTPSVMNHYLTEILSLDLR--QTLEKITL 530
            L  N      F +       K     ++          +  E+  L  +  Q L     
Sbjct: 184 WLEANDYALSCFNFHNVPYRGKRDNELIQYNEAYRESFLHCEEVDELTWQKGQILHGEEF 243

Query: 531 GSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
              +++  L L I    L           +   D++E K+ +  L  ++K+A        
Sbjct: 244 IIHRDDFDLVLSISKVPLFHPDGSRKGLIVMGRDVTELKETEKLLRKSEKLAVV-----G 298

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
              A ++HEIR PLT++ GF  ++      P  N     Y + +    + +  I +  + 
Sbjct: 299 QLTAGIAHEIRNPLTSLKGFLTLL-----HPEINEENKWYVDVMLSEISQMESITSQFMA 353

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706
           +SK +     L     ++   + E ++ +   A    + I     + I  I  D   +KQ
Sbjct: 354 MSKPQ----VLSIHTCNVQALIEEVVTFILPTAVMHSVHIIMDHFDYISDIQCDSNQLKQ 409

Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
           + +NIL NAI   P GG I I T    N+ V +R+ D G G+    + +  +PF      
Sbjct: 410 VLINILKNAIEAMPDGGNIFIQTASLENDFVSIRIMDEGCGIPEERMARLGEPFY----- 464

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
             ++ +GTGLGL +   ++  + GK +I S    GT ++I  P+  T+ P
Sbjct: 465 -SLKEKGTGLGLMMCYKIIQEHHGKLFISSELNIGTTVDIQLPIA-TAQP 512



 Score = 44.2 bits (103), Expect = 0.086,   Method: Composition-based stats.
 Identities = 20/257 (7%), Positives = 66/257 (25%), Gaps = 16/257 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ++  G +  I+    + +G  + ++    +  + +    +            N      +
Sbjct: 54  LNLEGVILHINPAAERILGYTSSELERKIITSILEAHISEQVLQYIKNTAADNQKEYIVS 113

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           ++  +G +  + +    +PI+  NR  +G   + I+           + +  +K+   L 
Sbjct: 114 IYHKDGYS--LDVVTKLVPIFVENR-LTGV--YAIMKPLEKSERIEKVLQESEKRLRTLM 168

Query: 209 EIKKGHSSVEKEKYDIFSQQSPP---------PHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
                    +  +                   P+   ++           +  +   E  
Sbjct: 169 NSMPAFVIFKDHEGRWLEANDYALSCFNFHNVPYRGKRDNELIQYNEAYRESFLHCEEVD 228

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
            L   +   L  +E     +            L +        +      +     ++  
Sbjct: 229 ELTWQKGQILHGEEFIIHRDDFDLVLSISKVPLFHPDGSRKGLIVMGRDVTELKETEKLL 288

Query: 320 NLTP--ETVDKCPIPFF 334
             +     V +      
Sbjct: 289 RKSEKLAVVGQLTAGIA 305


>gi|311234521|gb|ADP87375.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris RCH1]
          Length = 975

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 105/587 (17%), Positives = 181/587 (30%), Gaps = 67/587 (11%)

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKY 354
                        +      E        +D      F+     G     N     +  Y
Sbjct: 116 DGRPVRYELAVDITDMREAQEDLLRFRAALDASAEAIFLVDLEEGRFLDVNSGACTMLGY 175

Query: 355 KSVDDIE----------IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
                +            A G   +LD+            +    D T +        + 
Sbjct: 176 DRDTLLGLGLCGIRRSMAADGCRQILDSIAAGAVLENVETVYLHRDGTFVPVEVGARLVD 235

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATS 462
                 LA+         +      +     E V +   +  +        L  +L A  
Sbjct: 236 RVGGPRLAIMVARDVSEKRKARRAMEVRYLYEHVLSSCARELLSRSCSESTLVGVLGALR 295

Query: 463 DGIAII---------NREGII---------------LSTNRAVSKLFGYP--VEDILRKP 496
            G             + EG +                  N A+  +         +    
Sbjct: 296 QGAGACRAYIFENYEDAEGRLCCSQRYESSAPGVRPELDNPALQNIIYASEAPNWLHELR 355

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556
               +              + +  +R  L             +       +  +     L
Sbjct: 356 KGRAVVGPVADQPLPERDVLQAQGIRSLLVLPIFARGVWCGFVGFDDTRTERTWQGGDIL 415

Query: 557 TMHDISE-------WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
            +   SE         + + +L+ + + AE+ S  KS FLA +SHEIRTPL AIIG +E+
Sbjct: 416 FLQTASEILGAALERHRAEAELAASHQRAEEASRAKSVFLANMSHEIRTPLNAIIGLTEL 475

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
              +              +    S   +L +VNDLLD+S++ESG+++L     S      
Sbjct: 476 TLQEPISQGVGENLRGVLH----SAEALLAVVNDLLDLSRVESGRLHLESVEFSPSRLAR 531

Query: 670 EAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG---QI 725
             + L+   A+ K +      A ++P  +  D   ++Q+ LN++ NA+ FT  GG    +
Sbjct: 532 GVVRLMTHVADRKGLDFELYIARDVPPTVTGDPARLRQVLLNLVGNALKFTDEGGVSLTV 591

Query: 726 IISTTHTSN------------EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
                 T                +   V DTG+G+         + F Q   S   R  G
Sbjct: 592 TPCICSTDTGGGILKGGNGGVRGLRFTVTDTGIGIPPDRQACIFESFVQADESTARRFGG 651

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820
           TGLGL +++ +V+   G+  + S P KG+      P        D I
Sbjct: 652 TGLGLAISRRLVEMMGGRLELRSEPGKGSEFWCDVPFASEGAARDGI 698



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/398 (9%), Positives = 91/398 (22%), Gaps = 26/398 (6%)

Query: 58  NQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDA-----------HGYLKEISEELPKTI 106
                                    +RF   +DA            G   +++      +
Sbjct: 115 PDGRPVRYELAVDITDMREAQEDL-LRFRAALDASAEAIFLVDLEEGRFLDVNSGACTML 173

Query: 107 GNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG-KTTLWPIEGTNLYVPIDLAA 165
           G     ++G+ LC +   +  D    I D +         +T     +GT  +VP+++ A
Sbjct: 174 GYDRDTLLGLGLCGIRRSMAADGCRQILDSIAAGAVLENVETVYLHRDGT--FVPVEVGA 231

Query: 166 LPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF 225
             +   +R         +          R   +        L    +   S    +  + 
Sbjct: 232 RLV---DRVGGPRLAIMVARDVSEKRKARRAMEVRYLYEHVLSSCARELLSRSCSESTLV 288

Query: 226 SQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTK 285
                        +      Y   +  +  +++Y           +      I       
Sbjct: 289 GVLGALRQGAGACRAYIFENYEDAEGRLCCSQRYESSAPGVRPELDNPALQNIIYASEAP 348

Query: 286 KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYAN 345
                  +  +              +         L      +     +    G + + +
Sbjct: 349 NWLHELRKGRAVVGPVADQPLPERDVLQAQGIRSLLVLPIFAR---GVW---CGFVGFDD 402

Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405
                  +   +  ++ A  +  L  A +     A       R++    A S  L  +  
Sbjct: 403 TRTERTWQGGDILFLQTASEI--LGAALERHRAEAELAASHQRAEEASRAKSVFLANMSH 460

Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
                L       E   Q P +          + +   
Sbjct: 461 EIRTPLNAIIGLTELTLQEPISQGVGENLRGVLHSAEA 498


>gi|254489495|ref|ZP_05102698.1| sensory box sensor histidine kinase/response regulator [Roseobacter
            sp. GAI101]
 gi|214042002|gb|EEB82642.1| sensory box sensor histidine kinase/response regulator [Roseobacter
            sp. GAI101]
          Length = 1488

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 114/648 (17%), Positives = 221/648 (34%), Gaps = 49/648 (7%)

Query: 184  VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL 243
            +   R  +D            +   +             D+F+  +        +    +
Sbjct: 733  IDDERRMSDDLNNLLSSSGIATLFLDTDFKIMRFTPAVRDLFNLITKDIGRPFSDITGKV 792

Query: 244  TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303
             +    KD     +       E  S     D           +   G +   +    E  
Sbjct: 793  KDPELLKDAEKVLDTLVTSECEVES----NDGRWFVRRILPYRTQSGKIDGVAVTFSEVS 848

Query: 304  SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEI 362
              +     +A   E       TV     P  V      +  A+ SF  +   +  D I  
Sbjct: 849  DLKVLQRETAAAREFAESIISTVR---EPMLVLDGNFKILSASLSFNRMFATEGADIIGK 905

Query: 363  AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
                  L               +L       +   A   ++         M         
Sbjct: 906  -----DLFAIQNKQWLVPRLRELLETVLPEKVTVEAFDISLDAGELGHREMLLNARRIEG 960

Query: 423  QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
            +  +         +  + +  +R +     +L +ILEA  + I  I+ EGII S +    
Sbjct: 961  RPKDEESILLAVEDVTEQKKAQRAILDREARLSAILEAAPEAIVTIDEEGIIGSFSPGAE 1020

Query: 483  KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL--EKITLGSTKEEKLLS 540
             +FG+  ++++ K   + + +   S  + YL   L    ++ +   +   G  K+   + 
Sbjct: 1021 TIFGFSADEVIGKNVNILMSEPDRSKHDSYLEHYLKTGEKKIIGVGREMFGGRKDGSRVP 1080

Query: 541  LRIIIKK--LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
            +R+ + +  L     +   M D++  K+ + +L  A+K+              ++H+   
Sbjct: 1081 IRLTVSELKLDGVRHFLGIMQDLTTEKERQAELHRAQKM-----EAVGQLTGGLAHDFNN 1135

Query: 599  PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
             LT +IG  E+++ +        +          + NL   + + LL  +K    + +L 
Sbjct: 1136 LLTVVIGNLELLEMR----TDEKKLHGLIKEALEASNLGAALTSQLLSFAK----RQSLA 1187

Query: 659  FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718
             E V+L++ V   + ++    NE +I I T  A+++   +AD   ++ + LN+  NA   
Sbjct: 1188 PENVALNKLVKTMLPILTRTLNE-QIAIETRLADDLAATVADPGQIESVILNLAINARDA 1246

Query: 719  TPSGGQIIISTT--------------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764
             P GG +II T+               T  + V L V DTGVGMT     +  +PF    
Sbjct: 1247 MPDGGTLIIETSNVTLDAAYAATQVDVTPGDYVCLSVTDTGVGMTPETQSRVFEPFFTTK 1306

Query: 765  NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
                    G+GLGL +       + G   I S   +G  I++  P+ +
Sbjct: 1307 GPGA----GSGLGLSMVYGFAKQSGGHVAIHSKIGEGATIKLFLPVAE 1350



 Score = 46.2 bits (108), Expect = 0.027,   Method: Composition-based stats.
 Identities = 31/253 (12%), Positives = 69/253 (27%), Gaps = 17/253 (6%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNT----W 143
            ID  G +   S       G  A ++IG  +  +        ++  +   LK         
Sbjct: 1006 IDEEGIIGSFSPGAETIFGFSADEVIGKNVNILMSEPDRSKHDSYLEHYLKTGEKKIIGV 1065

Query: 144  YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF-GIVHVNRVDNDPRALGKRLDK 202
              +      +G+ + + + ++ L       +  G R F GI+     + + +A   R  K
Sbjct: 1066 GREMFGGRKDGSRVPIRLTVSEL-------KLDGVRHFLGIMQDLTTEKERQAELHRAQK 1118

Query: 203  KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
              +                  +            + K+  L +      ++       LL
Sbjct: 1119 MEAVGQLTGGLAHDFNNLLTVVIGNLELLEMRTDEKKLHGLIKEALEASNLGAALTSQLL 1178

Query: 263  TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
            +  +      E+   +N    T         N        L+     +++        + 
Sbjct: 1179 SFAKRQSLAPENV-ALNKLVKTMLPILTRTLNEQIAIETRLADDLAATVADPGQIESVIL 1237

Query: 323  PETV---DKCPIP 332
               +   D  P  
Sbjct: 1238 NLAINARDAMPDG 1250


>gi|313611039|gb|EFR85926.1| sensor protein kinase WalK [Listeria monocytogenes FSL F2-208]
          Length = 440

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 80/398 (20%), Positives = 167/398 (41%), Gaps = 29/398 (7%)

Query: 424 FPENMPQNGIEPEDVDTRINKRKM--EIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
             + + +       +  R+ + +   E E  +L S+L   +DG+   +R G ++  N   
Sbjct: 66  GVDEIGELADSFNTLTKRVQEAQAMTEGERRKLSSVLAYMTDGVIATDRRGKVILINTPA 125

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT-EILSLDLRQTLEKITLGSTKEEKLLS 540
            K+     E    +     L+          +  +      R T +K  +          
Sbjct: 126 EKMLRVKHESANGRSIIDVLDIGDTYQFEDLMEVDGSLTMDRSTFDKPYVLRAN------ 179

Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
             +I ++  F++     +HDI++ ++   +              + DF++ VSHE+RTPL
Sbjct: 180 FSVIQRETGFNNGVIAVLHDITDQEKVDQE--------------RRDFVSNVSHELRTPL 225

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
           T++  + E + +  +          +          ++ +VNDLL +S+++ G+  L   
Sbjct: 226 TSMHSYLEALSDGAW--EDKEIAPRFLEVTQNETERMIRLVNDLLKLSRMDGGREQLEKS 283

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720
            V+  +  +  I   +    ++ I+ +         I  D   V Q+  NI+SNA  ++P
Sbjct: 284 FVNFTDFFNHIIDRFE-MMKKETIMFKRHIPREPVIIEIDEDKVMQVLDNIISNANKYSP 342

Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
            GG+I        + E+ + + D G+G+ + +L      F ++  ++     GTGLGL +
Sbjct: 343 DGGRISFYLKKFED-EIEVSIADEGLGVPDEDLANVFDRFFRVDKARSREMGGTGLGLAI 401

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
           A+ +++A+ G+ +      KGT+I+   P   +  P D
Sbjct: 402 AREVIEAHGGRIWAERNKTKGTIIKFTLP--YSDLPED 437


>gi|218528120|ref|YP_002418936.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium
           chloromethanicum CM4]
 gi|218520423|gb|ACK81008.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium
           chloromethanicum CM4]
          Length = 810

 Score =  295 bits (755), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 89/524 (16%), Positives = 170/524 (32%), Gaps = 42/524 (8%)

Query: 309 PSLSAYFDEGENLTPETVDKCPI--PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
           P  S      +      V+       + +   G++   NP       Y++ + I      
Sbjct: 4   PVRSDATQGTDGRYRLLVEAITDYAIYMLDRDGHVTSWNPGAKRFKGYEADEIIGR--HF 61

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
           S      + ++    + +                  ++ +         I     +   E
Sbjct: 62  SAFYTDTERAEAVPARALDEASRTGR---FEREGWRVRKDG-THFWAHVIIDPIRSPEGE 117

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLF 485
            +    I  +  + R  + K+     Q   +++   D  I ++N  G + S N    ++ 
Sbjct: 118 LIGFAKITRDLTERRTAEAKLRESEQQFRLLVQGVKDYAIYMLNARGEVASWNAGAQRIK 177

Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
           GY  ++I+   F+ F  Q            + +       E   L   K+       + I
Sbjct: 178 GYTPDEIIGHHFSEFYTQADRDAGLPQ-HGLNTAAREGRWENEGLRVRKDGTTFWAHVTI 236

Query: 546 KKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKES--SHKSDFLARVSHEIRTP 599
             +   +   +       DISE +Q +  L  A     +             ++H+    
Sbjct: 237 DAIRDDAGLLIGFAKVTRDISERRQAEEALQQAHAAMLRSQKLEAVGQLTGGIAHDFNNL 296

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  I G  +++     G   NPR                 +   LL  ++    +  L  
Sbjct: 297 LQVISGNLQLLSKDFAG---NPRAEMRVQSAMAGVARGAKLAAQLLAFAR----RQPLEP 349

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719
           + V++   V     +++  A    + I T  A  +   L D   ++   LN+  NA    
Sbjct: 350 KVVNIGRLVQGMDDMLR-RALGGEVEIETVVAGGLWNTLVDPDQIENAVLNLAINARDAM 408

Query: 720 PSGGQIIISTT--------------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
              G++ I                  T  + V+L V DTGVG+    LE+  +PF     
Sbjct: 409 DGHGRLTIEAGNAFLDDAYARGQDDVTPGQYVLLAVTDTGVGIPPEALERVFEPFFTTKP 468

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
                 +GTGLGL +   +V  + G   I+S    GT +++  P
Sbjct: 469 ED----KGTGLGLAMVYGLVKQSGGHIKIYSEVDAGTTVKVYLP 508



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/251 (11%), Positives = 76/251 (30%), Gaps = 8/251 (3%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + +D  G++   +    +  G  A ++IG                    L +   T   
Sbjct: 29  IYMLDRDGHVTSWNPGAKRFKGYEADEIIGRHFSAFYTDTERAEAVPARALDEASRTGRF 88

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +   W +     +    +   PI S   E  GF    I           A  +  +++F 
Sbjct: 89  EREGWRVRKDGTHFWAHVIIDPIRSPEGELIGFAK--ITRDLTERRTAEAKLRESEQQFR 146

Query: 206 HLHEIKKGHSS-VEKEKYDIFSQQSPPPHLR--MKNKVSS--LTEYYAHKDDVLKTEKYP 260
            L +  K ++  +   + ++ S  +    ++    +++     +E+Y   D      ++ 
Sbjct: 147 LLVQGVKDYAIYMLNARGEVASWNAGAQRIKGYTPDEIIGHHFSEFYTQADRDAGLPQHG 206

Query: 261 LLTSEESSLPEQEDFH-TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
           L T+      E E      +   +        +++++     +       S     +E  
Sbjct: 207 LNTAAREGRWENEGLRVRKDGTTFWAHVTIDAIRDDAGLLIGFAKVTRDISERRQAEEAL 266

Query: 320 NLTPETVDKCP 330
                 + +  
Sbjct: 267 QQAHAAMLRSQ 277


>gi|302344709|ref|YP_003809238.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfarculus baarsii DSM 2075]
 gi|301641322|gb|ADK86644.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfarculus baarsii DSM 2075]
          Length = 573

 Score =  295 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 111/605 (18%), Positives = 227/605 (37%), Gaps = 45/605 (7%)

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY--PLLTSEES 267
           +     +  +E+  + +++        K  ++ + + +  K + L   ++   +L   E 
Sbjct: 1   MADQLDNKTREELLVLAREQQAALATYKETLARIYQEFDAKIEELSLIRWVSDVLRQAED 60

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP-ETV 326
                     + +++         L +      E L+  +  + S    E        T+
Sbjct: 61  LRGLGLGLVEVVISELPADFACLLLTDPEMTRLEPLAVFDRAAESPSIIEEPTPGQCLTL 120

Query: 327 DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
            + P+   V   G +   +P+       +  + +    G ++L+  P ++    +  ++L
Sbjct: 121 GEGPLGEAVGE-GRILLLSPTDHSPPAGQWPEIL--PPGAASLIALPLIARQQILGAIIL 177

Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
                   +          +   +L +       A      + Q G   E +    ++ +
Sbjct: 178 CSQSPGAFSE---------DHARALTILCDHAAAALANARLIDQLGEINERLLA--SELE 226

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
                  L  +L+  SD I I + EG +   N+A S  FG   + ++ +P          
Sbjct: 227 AHQAREYLQQVLDTASDLIIISDAEGRVTYANQAASS-FGLQRQALVGRPLAPLF----- 280

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQ 566
                       L L   L +            S+ +    LP +      + D++  K 
Sbjct: 281 ---LERARAAAMLGLGAPLSEELELQAPGGHGFSVLVSTTPLPDTGEVLAIVRDVTRRKA 337

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
            + +L HA+K+A           A V+HEI  PL AI G+++++ +    P       E+
Sbjct: 338 LERQLMHAEKLASVGI-----LAAGVAHEIGNPLAAIGGYAQLLDSDDTTP---AERREF 389

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV--QLYANEKRI 684
           A  I      +  I+ +LLD S+          +PV +++A+   +++       ++  +
Sbjct: 390 AGAIAEQTERINRIIRELLDYSRPS----QYLGQPVDVNQAIEAVLNMFFTSKRLSQDNL 445

Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744
            I+   A N+P++  D   ++Q+ LN++ NA      GGQ+ IST       + +   DT
Sbjct: 446 SIQRDLARNLPKVSLDRDQLQQVVLNMVINAAQAMAGGGQLTISTR-EQAGWLRMEFADT 504

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G G+   +L     PF          G+GTGLGL +   ++ A  G+  + S   KGT  
Sbjct: 505 GPGIGPDKLPLIFDPFFTTKPP----GQGTGLGLSICDRIISAGGGRIEVASALGKGTTF 560

Query: 805 EIIFP 809
            ++ P
Sbjct: 561 TVLLP 565



 Score = 47.7 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 30/241 (12%), Positives = 54/241 (22%), Gaps = 18/241 (7%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           DA G +   ++      G     ++G  L      L ++       +L        +  L
Sbjct: 249 DAEGRVTYANQAASSF-GLQRQALVGRPL----APLFLERARA-AAMLGLGAPLSEELEL 302

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS-HLH 208
               G    V +    LP      E        IV                +K  S  + 
Sbjct: 303 QAPGGHGFSVLVSTTPLP---DTGEV-----LAIVRDVTRRKALERQLMHAEKLASVGIL 354

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
                H             Q          +        A + + +      LL     S
Sbjct: 355 AAGVAHEIGNPLAAIGGYAQLLDSDDTTPAERREFAGAIAEQTERINRIIRELLDY---S 411

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
            P Q     +++NQ  +        +           R+            +   + V  
Sbjct: 412 RPSQYLGQPVDVNQAIEAVLNMFFTSKRLSQDNLSIQRDLARNLPKVSLDRDQLQQVVLN 471

Query: 329 C 329
            
Sbjct: 472 M 472



 Score = 40.0 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 24/271 (8%), Positives = 63/271 (23%), Gaps = 21/271 (7%)

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247
           R    P  + +    +   L E   G +  E     +      PP  +    +       
Sbjct: 101 RAAESPSIIEEPTPGQCLTLGEGPLGEAVGEGRILLLSPTDHSPPAGQWPEILPPGAASL 160

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
                + + +    +     S     + H   L                 +    ++ R 
Sbjct: 161 IALPLIARQQILGAIILCSQSPGAFSEDHARALTILCDHAAAALANARLIDQLGEINERL 220

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGL 366
             +      +      + +D       +    G + YAN +       +    +     L
Sbjct: 221 -LASELEAHQAREYLQQVLDTASDLIIISDAEGRVTYANQAA-SSFGLQRQALVGRP--L 276

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
           + L                        ++    L        +  ++        +    
Sbjct: 277 APLFLERAR--------AAAMLGLGAPLSEELELQA---PGGHGFSVLVSTTPLPDTGE- 324

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
                 I  +    +  +R++ +   +L S+
Sbjct: 325 ---VLAIVRDVTRRKALERQL-MHAEKLASV 351


>gi|260596768|ref|YP_003209339.1| phosphate regulon sensor protein [Cronobacter turicensis z3032]
 gi|260215945|emb|CBA28551.1| Phosphate regulon sensor protein phoR [Cronobacter turicensis
           z3032]
          Length = 437

 Score =  295 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 74/427 (17%), Positives = 151/427 (35%), Gaps = 37/427 (8%)

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             +L       +     L  + W     L +                  G+    +  + 
Sbjct: 33  WFLLAAVTGLLVWHFWNLLRLSW----WLWVDRSMTPPPGSGSWEPLLYGLHQMQLRNKK 88

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            +R++   + +  S  E+  D + +   EG+I   N    +L G    D   +     L 
Sbjct: 89  RRRELGNLIKRFRSGAESLPDAVVLTTEEGVIFWCNGLAQQLLGLRWPDDNGQNILNLLR 148

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
               +               Q   +         + L  R++           +   D++
Sbjct: 149 YPEFTSYL----------RGQEFNRPLHLVLNNGRHLEFRVMPY---SEDQLLMVARDVT 195

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  Q +                + +F A VSHE+RTPLT + G+ E++  Q        +
Sbjct: 196 QMHQLEG--------------ARRNFFANVSHELRTPLTVLQGYLEMMHEQTLEGPLREK 241

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                + +      +  +V  LL +SKIE+       E + +   +       Q  + ++
Sbjct: 242 A---LHTMREQTYRMEGLVKQLLTLSKIEAAPAMQLNETIDVPMMLRVVEREAQTLSQQR 298

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           +          + ++L +   ++    N++ NA++ TP+G  I +   H +N      V 
Sbjct: 299 Q-TFTFEVDPQL-KVLGNDEQLRSAISNLVYNAVNHTPAGTHITVRWEHVANG-ARFSVA 355

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG G+    + +  + F ++  ++  +  G+GLGL + K  +  +  +  I S P KGT
Sbjct: 356 DTGPGIAAEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHALTHHDARLEIESAPGKGT 415

Query: 803 LIEIIFP 809
               + P
Sbjct: 416 TFSFLLP 422


>gi|150019733|ref|YP_001311987.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           beijerinckii NCIMB 8052]
 gi|149906198|gb|ABR37031.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           beijerinckii NCIMB 8052]
          Length = 581

 Score =  295 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 98/522 (18%), Positives = 193/522 (36%), Gaps = 42/522 (8%)

Query: 324 ETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL------STLL-DAPKLS 376
           E  +  P    V   G + +AN     L        +  +           +  D+   S
Sbjct: 28  EYFNFLPYAILVQRGGKIVFANDELRKLLHCSDESVLGKSIVSLLQLKSDAIFSDSINES 87

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ------------- 423
                    +       I    + +  Q N                +             
Sbjct: 88  FKVIEGEHKIKDFQSNIIDVDIKCNIKQLNNCWYEFFVLRDTTIKKKKYTDAIKKAEKYT 147

Query: 424 ---------FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII 474
                                +  +    + K+         +++   DG++I +    I
Sbjct: 148 DILEGLPIVGMGKERVGITIRDASERGELQEKLFESKELYKKLIDILPDGVSIHDG---I 204

Query: 475 LS--TNRAVSKLFGYP-VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
                + + +++ GY   ++++ K     + +    ++   +  +L  D           
Sbjct: 205 TYSFVSDSYARMLGYDNTKELVGKRLDEVVSKENHELIKRQVENLLYKDK-MFQRAEYKF 263

Query: 532 STKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
            TK+           +  +++      ++ DI++ K+ +      ++ A +    K++F 
Sbjct: 264 ITKQNIYKDFESTSIRFWYNNKLNILSSIRDITDKKRIEESRLLLER-AIEYDKLKTEFF 322

Query: 590 ARVSHEIRTPLTAIIGFSE--VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           + +SHE+RTPL  ++   +   +     G +      +Y   + ++   +L ++N+LLDI
Sbjct: 323 SNMSHELRTPLNILLSSLQLINMNTDTKGNINLSSIRKYTGIMKQNCYRLLRLINNLLDI 382

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707
           +KI+SG   L+     +   V +    V  Y  EK I I          +  D   ++++
Sbjct: 383 TKIDSGFYTLNICNHDIVRIVEDITLSVAEYVKEKGIEIIFDTDIEEKVLGFDADKIERV 442

Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
            LN+LSNA+ FT SGG+I +S    ++  + + VRDTG G+   +L      F Q+  S 
Sbjct: 443 ILNLLSNAVKFTKSGGKIDVSIQDLAD-YIYITVRDTGSGIPKNKLNSIFDRFIQVDKSL 501

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             R EGTG+GL L K++VD + G   + S   + T   II P
Sbjct: 502 SRRSEGTGIGLALVKSLVDMHRGSITVESEYGEYTQFNIILP 543


>gi|116623382|ref|YP_825538.1| integral membrane sensor hybrid histidine kinase [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116226544|gb|ABJ85253.1| integral membrane sensor hybrid histidine kinase [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 796

 Score =  295 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 81/280 (28%), Positives = 139/280 (49%), Gaps = 16/280 (5%)

Query: 553 CYSLTMH-DIS----EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
                   D++    E +Q  ++L    + AE  +  KS FLA +SHE+RTP+ AIIG+S
Sbjct: 255 GRLRLARQDLTRANAELEQRHHELQLLMEAAESANQAKSQFLANMSHELRTPMNAIIGYS 314

Query: 608 EVIKNQRFGPLGNPRYIEY-------ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
           E++ ++           E           I  +G  +L ++ND+LD+SKIE+GKM+L+ E
Sbjct: 315 EMLMDEAQDMASASALPEVEAVFVPELKKITAAGRHLLALINDILDLSKIEAGKMDLYLE 374

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720
              + E V++    +Q   ++    ++   +  I  + ADL  V+Q+  N+LSNA  FT 
Sbjct: 375 TFQIPEMVNDVACTIQPLVDKNANRLQIDISPGIGPMRADLTKVRQVLFNLLSNASKFTD 434

Query: 721 SGGQIIIST---THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
            G  I +        + + +  +V+D+G+GMT  +  +  + F Q   S   +  GTGLG
Sbjct: 435 KG-VIELRVFNHHDEARDWIAFQVKDSGIGMTREQAARIFEAFTQADASTTRKYGGTGLG 493

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
           L + +   +   G+  + S P +GT+  +  PL   +  H
Sbjct: 494 LTITRKFCELMGGRITVDSEPGQGTVFTVRLPLEVAADAH 533


>gi|127512132|ref|YP_001093329.1| hybrid sensory histidine kinase BarA [Shewanella loihica PV-4]
 gi|126637427|gb|ABO23070.1| Hpt sensor hybrid histidine kinase [Shewanella loihica PV-4]
          Length = 933

 Score =  295 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 83/251 (33%), Positives = 131/251 (52%), Gaps = 8/251 (3%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  AKK A + S  KS+FLA +SHE+RTPL  +IGF++ +         +    +Y   
Sbjct: 288 ELDLAKKRALEASRIKSEFLANMSHELRTPLNGVIGFAKQLLKTPL----HASQQDYIKT 343

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I++S   +L I+ND+LD SK+E+GKM L   P +L E + + ISL+   A EK + +   
Sbjct: 344 IEKSATNLLGIINDILDFSKLEAGKMELENMPFALREVIDDTISLLANSAKEKDLELVVD 403

Query: 690 FANNI-PRILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDTG 745
              +I   +  D   V Q+  N++ NAI FT SG    ++ +++       V   + DTG
Sbjct: 404 IEPSINDNVSGDALRVSQVITNLVGNAIKFTDSGSVHLKMRLTSEEAEKVNVRCEITDTG 463

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+      +  + FGQ  +S   R  GTGLGL + K +++   G+    S P KG+   
Sbjct: 464 IGIDKPHQAQLFQAFGQADSSISRRFGGTGLGLIITKRLINRMGGQIGCISAPGKGSTFW 523

Query: 806 IIFPLYDTSHP 816
              PL  + +P
Sbjct: 524 FTLPLKLSPYP 534


>gi|70729884|ref|YP_259623.1| sensory box histidine kinase/response regulator [Pseudomonas
           fluorescens Pf-5]
 gi|68344183|gb|AAY91789.1| sensory box histidine kinase/response regulator [Pseudomonas
           fluorescens Pf-5]
          Length = 1198

 Score =  295 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 108/617 (17%), Positives = 216/617 (35%), Gaps = 28/617 (4%)

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
           I     ++ + K  +    +  P  +  N+     +     D     E+   L      L
Sbjct: 320 ITADLLTMLEAKTGLSFDITALPSFKDLNEAVRNGQVQMVADRARTPERETYLQFTRPYL 379

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
                  T +     K       +     S   L  + H        +      E +   
Sbjct: 380 VGPYMLVTSDAANAPKSLEDMAGKTLLIGSGHALVSQLHQRYPQIRIKEVQTNFEALSLL 439

Query: 330 PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS-TLLDAPKLSDNNAIKPVMLYR 388
                 +       A  +          D +++   L   LL+       + ++   +  
Sbjct: 440 RD----HKADGTVQAEIAVSFNLPRIKEDQLKVRPALDLPLLNESFAVRRDQLELFSIID 495

Query: 389 SDRTCIAASAR------------LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
                I+  A             +    W    +                      +  +
Sbjct: 496 KSLRSISPDAITELNNRWRSKAAVAPPSWRDYRTTLYLAGAGSILLLLISLAWGYAMRRQ 555

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
                  +  +  ++  + +++  T + I + + +  ++  N +  K  G   + +L   
Sbjct: 556 VRQREKAEHALNDQLRFMDALINGTPNPIYVRDLKRRLVICNDSYLKSMGTDRQSMLGTD 615

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYS 555
                          +   I        +++      +E ++    +  +          
Sbjct: 616 LEQLAVPEAEQFSKDF-QSIFDGGPPLLIDRTVHIRGQEMRIYHWMLPYRNAEGEIQGII 674

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
               DISE +Q   +L+ AK  A+K +  K+ FLA +SHEIRTP++A++G  E+   +  
Sbjct: 675 GGWLDISERQQLLQELTQAKDEADKANRAKTTFLATMSHEIRTPMSAVLGMLELALKRAD 734

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
               +            S   +L+++ D+LDI++IESG ++L  E  +L   V     + 
Sbjct: 735 QGQFD---RPSIEVAYSSAQTLLELIGDILDIARIESGHLSLSPERANLRGLVEPVFRVF 791

Query: 676 QLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTS 733
              A +K + +     ++    +L D    KQI  N++SNAI FT  GG Q+ ++T  + 
Sbjct: 792 DGLARQKGLRLELELDSHAGDDVLVDPLRFKQILSNLISNAIKFTQQGGVQVRLATGPSE 851

Query: 734 NEEV--ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
            E +  +L V+D+G  +   +L++  KPF Q+    Q    GTGLGL + + + +   G 
Sbjct: 852 PEYLALLLTVKDSG--IAADDLQQLFKPFSQVLGQHQDARSGTGLGLVICRTLCEMMGGT 909

Query: 792 FYIFSTPAKGTLIEIIF 808
             + S P  GT + +  
Sbjct: 910 LTLHSQPGLGTEVRVQL 926


>gi|223937564|ref|ZP_03629467.1| multi-sensor signal transduction histidine kinase [bacterium
           Ellin514]
 gi|223893727|gb|EEF60185.1| multi-sensor signal transduction histidine kinase [bacterium
           Ellin514]
          Length = 616

 Score =  295 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 86/413 (20%), Positives = 160/413 (38%), Gaps = 29/413 (7%)

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD--TRINKRKMEIEVMQLCSI 457
           L               +P    ++  +           +         K+      + S 
Sbjct: 215 LTRATHELGEGNLDQLVPVTTRDELGDLAESFNKMAARLRAYRETTAEKIIRLHKTMEST 274

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
           L    D I ++N+EG I   N A   L                L +         L +  
Sbjct: 275 LATFPDPIFVLNKEGRIELMNPAAMDL-------AEDLDLKNELPERLQKTARKALADGE 327

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAK 575
           S       E +      +E+    RI+  +         ++ ++D++ ++   +      
Sbjct: 328 SFLPNSFKEVVHFRLGGDERFYLPRILPMRNEDEDLFGVAIVLYDVTRFRLLDD------ 381

Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
                    K++ +A VSHEIRTPLT++     ++  +  G L  P+  E          
Sbjct: 382 --------AKTNLVATVSHEIRTPLTSVRMVLHLLLEKTVGVLT-PKQSELIETARDDSE 432

Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695
            +L I+NDLLD++++E G  +L+ E  S  E V     +V   A  + + +       +P
Sbjct: 433 RLLRILNDLLDLTRLEQGNSDLYKEKTSPAELVRHINDIVHDAAAARELNLVCEVDPELP 492

Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755
            +  D + +  +  N+L+NAI ++P G ++I S   + + +V   VRD G G+     + 
Sbjct: 493 LVWVDRQRIDHVFTNLLNNAIKYSPIGSRVIFSARWSDDFDVQFIVRDFGPGIPEEYQDH 552

Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
               F ++P   +    G GLGL +A+ +V A+ G+  + S P +G+    I 
Sbjct: 553 IFDRFYRVPGQTKT---GAGLGLSIAREIVIAHGGRIGVRSWPGQGSEFYFIL 602


>gi|330952072|gb|EGH52332.1| PAS protein [Pseudomonas syringae Cit 7]
          Length = 595

 Score =  295 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 89/427 (20%), Positives = 172/427 (40%), Gaps = 28/427 (6%)

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK--R 445
            + R      A         E    +T  P   A +      + GI  E +         
Sbjct: 193 IARRFGAPIEALAKAADRIGEGDYEVTL-PISSAAEMNLLTRRFGIMAEALRQHQATNVD 251

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           ++     +L ++L++  DG+ +I+R+G +   N    +  G+    + +           
Sbjct: 252 ELLAGQQRLQAVLDSIDDGLLMIDRQGHLEHLNPVAQRQLGWDESRLGQSLGEALSRPEL 311

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISE 563
              ++  L         + L         E +LL+  +              + +HD++E
Sbjct: 312 DEQLHLVLRGGTLERAPEDLAIEI---DGESRLLTYSMTPVSHTKGHILGAVMVLHDVTE 368

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            +  +                +S+F+ R SHE+RTP+T  +  +  +  +R       R 
Sbjct: 369 QRAFE--------------RVRSEFVLRASHELRTPVTG-MHMAFGLLQERLHFAPESRE 413

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            +  N +      ++ ++NDLL+ S+ ++G   L   P S++  + EA +  +  A E+ 
Sbjct: 414 ADLLNTVTEEMQRLMQLINDLLNFSRYQNGLQKLKLAPCSVETLLQEAKARFEDQAQEQD 473

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
           I++       +PR+ AD   ++++  N+L NA+  TP  G I +       E  I+ V D
Sbjct: 474 IVLMLDMQEPMPRLHADQSQLERVLDNLLDNALRHTPPNGLIRLQ-ARRHGERAIISVED 532

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
            G G+   +  +  +PF Q+      +  G GLGL L K +V  + G+  ++S P +GT 
Sbjct: 533 NGEGIAYGQQGRIFEPFVQV----GRKKGGAGLGLALCKEIVQLHGGRMGVYSRPGQGTQ 588

Query: 804 IEIIFPL 810
             +  PL
Sbjct: 589 FYMALPL 595



 Score = 45.4 bits (106), Expect = 0.038,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 69/241 (28%), Gaps = 9/241 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G+L+ ++    + +G    + +G  L +      +D       L+ R  T      
Sbjct: 274 IDRQGHLEHLNPVAQRQLGWDESR-LGQSLGEALSRPELDEQ---LHLVLRGGTLERAPE 329

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
              IE       +  +  P+        G     ++H          +  R +      H
Sbjct: 330 DLAIEIDGESRLLTYSMTPVSHTKGHILGA--VMVLHDVTEQRAFERV--RSEFVLRASH 385

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           E++   + +      +  +    P  R  + ++++TE    +   L  +       +   
Sbjct: 386 ELRTPVTGMHMAFGLLQERLHFAPESREADLLNTVTE-EMQRLMQLINDLLNFSRYQNGL 444

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
              +    ++       K  F                   P L A   + E +    +D 
Sbjct: 445 QKLKLAPCSVETLLQEAKARFEDQAQEQDIVLMLDMQEPMPRLHADQSQLERVLDNLLDN 504

Query: 329 C 329
            
Sbjct: 505 A 505


>gi|119510644|ref|ZP_01629773.1| two-component hybrid sensor and regulator [Nodularia spumigena
           CCY9414]
 gi|119464695|gb|EAW45603.1| two-component hybrid sensor and regulator [Nodularia spumigena
           CCY9414]
          Length = 752

 Score =  295 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 88/521 (16%), Positives = 189/521 (36%), Gaps = 51/521 (9%)

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
                     + E      +   P   FV++          +  ++ + S D +      
Sbjct: 126 ERQRSENALRQSEERFRVALKNSP--IFVFNQDINLSYTWVYNPMSGWTSQDMLGKHDC- 182

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
             L+         AIK  +L             +            +T  P    +Q   
Sbjct: 183 -DLIPDKDAQGLTAIKHSVLTNGIG----IREEVSITTPLGTRYYDLTVEPLRNESQEIV 237

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
            +   GI  +  + ++++ K+  +     ++L+ T+D I + + E  I   N+    L+G
Sbjct: 238 GITCAGI--DISERKLSEAKIREQ----AALLDITTDAICVCDLENQIQFWNKGAETLYG 291

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
           + V++ + + F   L+       +  L  +++       E      TK  K + +     
Sbjct: 292 WQVQEAVGRNFGDILDNEAAQENHEALLSVMTKGK---WEGELTQITKTGKEILVASRWS 348

Query: 547 KLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
            +  +        +   DI+E K+ +++L   +++            + ++H++   LT 
Sbjct: 349 LVRDAQGRPKSILIVDTDITEKKRLESQLFRTQRL-----ESIGTLASGIAHDLNNILTP 403

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           I+  ++++      P  + R       ++ +     D+V  +L  ++   GK       +
Sbjct: 404 ILAGAQLL--PLKFPDADERTKRLLEILEINAKRGADLVKQVLSFARGVEGK----RITL 457

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
            +   + E   +++     K I I T+  N +  +  D   + Q+ +N+  NA    P  
Sbjct: 458 QIRHLIVEIAKILKETFP-KSIEIHTNIPNELWLVSGDSTQLHQVVMNLCVNARDAMPHR 516

Query: 723 GQIIIS--------------TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
           G + IS                  +   V++ V DTGVG+    L++  +PF        
Sbjct: 517 GILSISAENFVVDENYARMNLEAEAGLYVVITVTDTGVGIPQETLDRIFEPFFTTKP--- 573

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             G+GTGLGL     +V ++ G   ++S    GT  ++  P
Sbjct: 574 -VGQGTGLGLSTVIGIVKSHGGFINVYSEVGNGTSFKVYLP 613



 Score = 38.5 bits (88), Expect = 4.9,   Method: Composition-based stats.
 Identities = 22/228 (9%), Positives = 57/228 (25%), Gaps = 10/228 (4%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D    ++  ++      G    + +G    D+ D      N+     +  +  W G+ T 
Sbjct: 274 DLENQIQFWNKGAETLYGWQVQEAVGRNFGDILDNEAAQENHEALLSVMTKGKWEGELTQ 333

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
               G    + +      +              +           +   R  +  S    
Sbjct: 334 ITKTG--KEILVASRWSLVRDAQGRPK--SILIVDTDITEKKRLESQLFRTQRLESIGTL 389

Query: 210 IKKGHSSVEK------EKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
                  +            +   + P    R K  +  L        D++K        
Sbjct: 390 ASGIAHDLNNILTPILAGAQLLPLKFPDADERTKRLLEILEINAKRGADLVKQVLSFARG 449

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
            E   +  Q     + + +  K+ +  +++ ++    E        + 
Sbjct: 450 VEGKRITLQIRHLIVEIAKILKETFPKSIEIHTNIPNELWLVSGDSTQ 497


>gi|332761651|gb|EGJ91930.1| phosphate regulon sensor kinase PhoR [Shigella flexneri 2747-71]
 gi|332768504|gb|EGJ98687.1| phosphate regulon sensor kinase PhoR [Shigella flexneri 2930-71]
          Length = 431

 Score =  295 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 75/427 (17%), Positives = 150/427 (35%), Gaps = 37/427 (8%)

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             +L       I     L  + W     L +         +        G+    +  + 
Sbjct: 33  WFLLASVTGLLIRHFWNLLRLSW----WLWVDRSMTPPPGRGSWEPLLYGLHQMQLRNKK 88

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            +R++   + +  S  E+  D + +   EG I   N    ++ G    +   +     L 
Sbjct: 89  RRRELGNLIKRFRSGAESLPDAVVLTTEEGGIFWCNGLAQQILGLRWPEDNGQNILNLLR 148

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
                    +   + + D  + L  +            L I            +   D++
Sbjct: 149 YP------EFTQYLKTRDFSRPLNLVLNTGRH------LEIRAMPYTHKQ-LLMVARDVT 195

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  Q +                + +F A VSHE+RTPLT + G+ E++  Q        +
Sbjct: 196 QMHQLEG--------------ARRNFFANVSHELRTPLTVLQGYLEMMDEQPLEGAVREK 241

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                + +      +  +V  LL +SKIE+    L  E V +   +       Q  + +K
Sbjct: 242 A---LHTMREQTQRMEGLVKQLLTLSKIEAAPTQLLNEKVDVPMMLRVVEREAQTLSQKK 298

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           +        N + ++  +   ++    N++ NA++ TP G  I +      +      V 
Sbjct: 299 Q-TFTFEIDNGL-KVSGNEDQLRSAISNLVYNAVNHTPEGTHITVRWQRVPHG-AEFSVE 355

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G G+    + +  + F ++  ++  +  G+GLGL + K  V+ +  +  I ST  KGT
Sbjct: 356 DNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHAVNHHESRLNIESTVGKGT 415

Query: 803 LIEIIFP 809
               + P
Sbjct: 416 RFSFVIP 422


>gi|315181686|gb|ADT88599.1| sensor histidine kinase LuxQ [Vibrio furnissii NCTC 11218]
          Length = 858

 Score =  295 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 79/371 (21%), Positives = 155/371 (41%), Gaps = 21/371 (5%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           +++  +  Q   +         +   EG ++  N +    F     +         L   
Sbjct: 351 QRLSDQEKQFEDLFNFALSPTILWTAEGELIRMNPSAHSHF--LRNNADDHSLFSVL--- 405

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISE 563
               +   +      ++ + +         + +++   +    +            D++ 
Sbjct: 406 -KRQLIPQIKLAAQGEILKEVNTEV-----DGRVILWNLSPIVVENRIESIITQGQDVTS 459

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + + +   A+K AE+ +  ++DFLA++SHE+RTPL  I+G S+++K      +     
Sbjct: 460 IAEAEKQSRIARKEAEESARVRADFLAKMSHELRTPLNGILGVSQLLKRT----VTEKEQ 515

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            E  N +  SG  +L ++ND+LD SKIE GK  +      L + VS    + +    EK 
Sbjct: 516 AEQVNVLCSSGEHLLAVLNDILDFSKIEQGKFRIQKADFPLVDVVSAIERIYRPLCREKG 575

Query: 684 ILIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH---TSNEEVIL 739
           + +  +    +   +  D   + QI  N+L+N++ FT  G  I I        +  ++ +
Sbjct: 576 LTLTLNTNIGDDLVVRTDQVRLNQILFNLLNNSVKFTHEGA-INIQLHLIETEAGAKLEI 634

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V DTGVG+   +L    +PF Q  ++      G+GLGL +  ++++   G   + S+  
Sbjct: 635 TVLDTGVGIREQDLALIFEPFVQAESTNTREYGGSGLGLAIVHSLIEMLGGSIEVKSSFG 694

Query: 800 KGTLIEIIFPL 810
            GT   I  PL
Sbjct: 695 VGTRFTIELPL 705


>gi|298247031|ref|ZP_06970836.1| integral membrane sensor signal transduction histidine kinase
           [Ktedonobacter racemifer DSM 44963]
 gi|297549690|gb|EFH83556.1| integral membrane sensor signal transduction histidine kinase
           [Ktedonobacter racemifer DSM 44963]
          Length = 484

 Score =  295 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 71/253 (28%), Positives = 121/253 (47%), Gaps = 5/253 (1%)

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN----QRFGPLGNP 621
           Q + ++   +  AE+    +   +  VSHE+RTP+ +I    EV+           L   
Sbjct: 229 QAEEQVRREQAKAERAELSRQQLIVNVSHELRTPVASIRAHLEVLLKACAHDDGLVLQPQ 288

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
               Y     R    +  +V DLL +S+ E+ K+ L+   V   E + E    +   A +
Sbjct: 289 ELSNYLGIAHRETVRLSSLVEDLLSLSRTEADKLRLNMASVPPGEVIEEVYQALLPLARK 348

Query: 682 KR-ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
           +R I +  S    +PR+ AD + + Q+ +N++ NAI +TP+GG I IST    ++ +++ 
Sbjct: 349 ERMITLVHSLPERLPRVQADHQRLTQVLMNLVRNAITYTPNGGIISISTRQEHSDYLVIS 408

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V DTG+G+   +L +  + F +   S+     G GLGL + K +VDA  GK  + S   +
Sbjct: 409 VADTGMGIPADQLAQIFERFYRTDASRSRSSGGFGLGLSIVKDLVDAMGGKITVESQEGE 468

Query: 801 GTLIEIIFPLYDT 813
           G+   I   L   
Sbjct: 469 GSCFHIHLRLAQA 481


>gi|94265927|ref|ZP_01289653.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93453513|gb|EAT03921.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 399

 Score =  295 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 73/251 (29%), Positives = 127/251 (50%), Gaps = 10/251 (3%)

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           +   +     + A+  +  KS+FLA +SHEIRTP+  +IG + ++  +      +     
Sbjct: 147 EAAVQAEELAREAQAANIAKSEFLANMSHEIRTPMNGVIGMASLLLAEDL----SDEQRS 202

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           YA  I  SG  +L+++N +LD SKIE+G++ L   P S  E V E   L++  A  + I 
Sbjct: 203 YAQIIMSSGQALLELINQILDFSKIEAGRLELDHRPFSPRELVEEVAVLLRPQAAAQNIA 262

Query: 686 IRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNE----EVIL 739
           + +  + +IP  +  D   ++Q+ LN++ NAI FT  GG  + +S            +  
Sbjct: 263 LTSEVSPDIPAIVEGDPVRLRQVLLNLVGNAIKFTEVGGVAMELSPAPADPAAPHCSLHF 322

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V+D+G+G+   +L+   + F Q+  S   +  GTGLGL + + +V+   G+  + S   
Sbjct: 323 AVKDSGIGIPVEKLDLLFQRFQQVDGSTCRKYGGTGLGLAICRRLVELMGGEIGVESEEG 382

Query: 800 KGTLIEIIFPL 810
           KG+      PL
Sbjct: 383 KGSTFWFTVPL 393


>gi|71907997|ref|YP_285584.1| PAS [Dechloromonas aromatica RCB]
 gi|71847618|gb|AAZ47114.1| PAS protein [Dechloromonas aromatica RCB]
          Length = 901

 Score =  295 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 111/495 (22%), Positives = 197/495 (39%), Gaps = 37/495 (7%)

Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403
           A+  +L+     + +       +   L    L           +         S     +
Sbjct: 266 ASTGWLMQAVLPTDEAFAPIHAMERHLIVISLILTLIATFASWWWLRLQFRPLSEISSLL 325

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
           +  R+  +    +P  + ++            E + T            +L  I+     
Sbjct: 326 RQMRDGEIPRQALPVIRQDEIGLLTEALNGLQEVIVTEEAMAAEHAANNRLRHIVSYIP- 384

Query: 464 GIAI---INREGI--ILSTNRAVSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEI 516
           GI     +  +G       +  + +++G   + +    +P +  +  +        + E 
Sbjct: 385 GIVFQYRLFPDGHSAFPFASDGIREIYGLAPDQVENDVRPLSDMMHPDDAEHFLATMHES 444

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---YSLTMHDISEWKQEKNKLSH 573
                             + K   L I  +          +   + DISE K    +L H
Sbjct: 445 AKT--LSPWHVDYRICLPDGKTKWLMINAQPESSKDGSTLWHGFIADISEMKAMSAELEH 502

Query: 574 AKK------------------IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
            +                    AE+ +  KS+FLA++SHEIRTPL  ++G + +      
Sbjct: 503 YRDHLEQLVKVRTADLEASRAEAERLALAKSEFLAKMSHEIRTPLHGVLGMAHI---GGR 559

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
                 +  E    I  SGNL+L I+ND+LD SK+E+G + +    + L   ++E++ L+
Sbjct: 560 NTSEGSKAHEAFAKITHSGNLLLGIINDILDFSKMEAGMLKIESTDIDLPAILAESMELM 619

Query: 676 QLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
           Q  AN K++ ++   A N+P    +D   ++QI LN+LSNA+ FT SG  + +  +    
Sbjct: 620 QERANAKKLSLQLRVAENLPAHCQSDSLRLRQILLNLLSNAVKFTVSGS-VTLDASF-DG 677

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
            ++I +V DTG+G+T+ +  K   PF Q  NS   R  GTGLGL +   +V    G  ++
Sbjct: 678 HQLIFKVSDTGIGITHEQSSKIFNPFEQGDNSTTRRFGGTGLGLAITSHLVKLMEGTIHL 737

Query: 795 FSTPAKGTLIEIIFP 809
            STP  G+  EI  P
Sbjct: 738 ESTPDNGSRFEIRLP 752


>gi|218779274|ref|YP_002430592.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218760658|gb|ACL03124.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 1016

 Score =  295 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 106/690 (15%), Positives = 228/690 (33%), Gaps = 64/690 (9%)

Query: 168 IYSRNREFSGFRGFGIVHVNRVDNDP---RALGKRLDKKFSHLHEIKKGHSSVEKEKYDI 224
           IY     F G   F    +     +    R   +  ++++  L E    +  V     + 
Sbjct: 208 IYIIEFSFMGVVMFMTWQLGNQVVEALVVRDQLEESERRYRLLAENISDNVWVLDMDMNF 267

Query: 225 FSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE--SSLPEQEDFHTI-- 278
                    L      +V   + Y    ++ L   +  LL   E     PE E    +  
Sbjct: 268 VYSSPSVKGLLGFEPAEVIGTSAYGIMTEEGLSRVQQELLGGLEENRLFPEGEVRRNLII 327

Query: 279 -----NLNQYTKKQYFGTLQNNSKESFEYLSHRNH----PSLSAYFDEGENLTPETVDKC 329
                +      +   G L ++ +     +                 E E       +  
Sbjct: 328 QLIRKDGTPIHTEIKAGFLYDDDRNPVGLVGISRDVEAQIVAEKALRESEEKYRRVYENI 387

Query: 330 PIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388
              +F     G +   +PS   +T+Y   + I     + +L   P   ++     V    
Sbjct: 388 QDVYFEADLDGIIREVSPSIRYVTQYTREELIGRN--IRSLTVNPDERNDRLEAIV---- 441

Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
           S        A            +  +       ++  +     G      D +  +  + 
Sbjct: 442 SQGRINDYEAAFVD---KDGAIVRASITAAFLFDEEGKPRGTAGTIRNIEDRKRAEEALR 498

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
              ++   + E  +D I  ++  G     + +V ++ G+PVE++++     +L   + + 
Sbjct: 499 DSEIRFRLLAENATDVIWTMSLGGAFTYISPSVERMSGFPVEEVMKMTLDQYLTPESWAK 558

Query: 509 MNHYLTEILSLDL---RQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDI 561
           +   +   LS D               TK   ++ + +    +               DI
Sbjct: 559 VQRSIARELSSDRAFNAYPATLELQQYTKSGDVIDVEVTSNWILNEEGQPVGIRGATRDI 618

Query: 562 SEWKQEKNKLSHAKKIAEKE--SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
              K+ + + S  +    +             ++H+    L  IIG+++++  +  G   
Sbjct: 619 RARKKAEREKSELEAQLLQARKMEAIGTLAGGIAHDFNNILHPIIGYTQMLMEEHKG--- 675

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
                E  + I R+     ++V+ +L   +  S   +L    V L   V E++SL++   
Sbjct: 676 RESTTEVLDEILRAAARAKELVSQILTFGRRSSEAPSL----VDLSAVVKESLSLLKGSI 731

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS-GGQIIIS---TTHTSNE 735
               I ++ +       +  +   + Q+ +N+ +NA     + GG + I     +   + 
Sbjct: 732 PS-TIEVKATLPEADGGVFGNSSQLHQMVMNLCTNAYQAMKNMGGVMTIRLQKVSLNGDG 790

Query: 736 EVI-----------LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
             +           L V DTG GM+    E+  +P+    +     GEGTG+GL +  ++
Sbjct: 791 GALAPNLPKGYYQKLSVSDTGPGMSKAVTERIFEPYFTTKD----VGEGTGMGLAMVHSI 846

Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           V ++ G+  + S   +G L E+  P    +
Sbjct: 847 VKSHQGEICVHSKLNRGALFEVYLPAAPGA 876



 Score = 88.2 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 52/478 (10%), Positives = 129/478 (26%), Gaps = 33/478 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID--PNNHIGDLLKRQNTW 143
            W +D        S  +   +G    ++IG     +     +       +G L + +   
Sbjct: 258 VWVLDMDMNFVYSSPSVKGLLGFEPAEVIGTSAYGIMTEEGLSRVQQELLGGLEENRLFP 317

Query: 144 YGKTTL------WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG 197
            G+            +GT ++   ++ A  +Y  +R   G    GI              
Sbjct: 318 EGEVRRNLIIQLIRKDGTPIHT--EIKAGFLYDDDRNPVGL--VGISRDVEAQIVAEKAL 373

Query: 198 KRLDKKFSHLHEIKKGHSSVEKEKY--DIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255
           +  ++K+  ++E  +               S          + ++          +   +
Sbjct: 374 RESEEKYRRVYENIQDVYFEADLDGIIREVSPSIRYVTQYTREELIGRNIRSLTVNPDER 433

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS----HRNHPSL 311
            ++   + S+      +  F   +            L +   +            +    
Sbjct: 434 NDRLEAIVSQGRINDYEAAFVDKDGAIVRASITAAFLFDEEGKPRGTAGTIRNIEDRKRA 493

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
                + E       +      +  S  G   Y +PS   ++ +   + ++        L
Sbjct: 494 EEALRDSEIRFRLLAENATDVIWTMSLGGAFTYISPSVERMSGFPVEEVMK------MTL 547

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
           D     ++ A     + R   +  A +A   T++  +             +N       Q
Sbjct: 548 DQYLTPESWAKVQRSIARELSSDRAFNAYPATLELQQYTKSGDVIDVEVTSNWILNEEGQ 607

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATS--DGIAIINREGIILSTNRAVSKLFGYP 488
                        ++K E E  +L + L      + I  +   GI    N  +  + GY 
Sbjct: 608 PVGIRGATRDIRARKKAEREKSELEAQLLQARKMEAIGTL-AGGIAHDFNNILHPIIGYT 666

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
              +          + + + +   +    +       + +T G    E    + +   
Sbjct: 667 QMLMEEHK-----GRESTTEVLDEILRAAARAKELVSQILTFGRRSSEAPSLVDLSAV 719



 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/251 (9%), Positives = 60/251 (23%), Gaps = 25/251 (9%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL-HIDPNNHIGDLLKRQNTWY 144
            W +   G    IS  + +  G    +++ M L               I   L     + 
Sbjct: 515 IWTMSLGGAFTYISPSVERMSGFPVEEVMKMTLDQYLTPESWAKVQRSIARELSSDRAFN 574

Query: 145 GKTTLWPIE---GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
                  ++    +   + +++ +  I +   +  G RG       R           L+
Sbjct: 575 AYPATLELQQYTKSGDVIDVEVTSNWILNEEGQPVGIRG--ATRDIRARKKAEREKSELE 632

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
            +     +++   +      +D  +   P         +   T+    +    ++    L
Sbjct: 633 AQLLQARKMEAIGTLAGGIAHDFNNILHP---------IIGYTQMLMEEHKGRESTTEVL 683

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
                      E        +    Q     + +S+               +        
Sbjct: 684 ----------DEILRAAARAKELVSQILTFGRRSSEAPSLVDLSAVVKESLSLLKGSIPS 733

Query: 322 TPETVDKCPIP 332
           T E     P  
Sbjct: 734 TIEVKATLPEA 744


>gi|325108371|ref|YP_004269439.1| integral membrane sensor signal transduction histidine kinase
           [Planctomyces brasiliensis DSM 5305]
 gi|324968639|gb|ADY59417.1| integral membrane sensor signal transduction histidine kinase
           [Planctomyces brasiliensis DSM 5305]
          Length = 609

 Score =  295 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 93/328 (28%), Positives = 150/328 (45%), Gaps = 37/328 (11%)

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571
           YL +I     R TL+      T +E    L     ++     + +T+ D  E K   N L
Sbjct: 233 YLKDISEEIARGTLDLRADIRTGDE-FEELSHAFNRML---RHLVTVQD--ELKLANNSL 286

Query: 572 SHAKKIAEKES-------SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
                   + +         K++FLA +SHE+RTPL +I+GFS+V+         N +  
Sbjct: 287 DSKVDELARANLSLFEMNKLKNEFLATMSHELRTPLNSILGFSDVL---GSADNLNDKQK 343

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
            Y   I  SG  +L ++ND+LD++KIESGKM LH    S+ E V +    +   A+ K I
Sbjct: 344 RYLGNISSSGQRLLTLINDILDLAKIESGKMELHAVEFSIAEIVEQLCLSISPLADRKNI 403

Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT-------------- 730
            +    + ++P +  D   ++QI  N+LSNA+ FTP GG++ +  T              
Sbjct: 404 ELTWMCSPDMPPMYQDAGKIQQILTNLLSNAVKFTPDGGRVRVEVTPLCLVPDENNTDDS 463

Query: 731 -HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI------PNSQQIRGEGTGLGLPLAKA 783
              + + V + V DTG+G+   + E+  + F Q        +      EGTGLGL + K 
Sbjct: 464 VPAARDLVQISVADTGIGIPLADQERIFEKFRQSSAVPGQEDLLTREYEGTGLGLSIVKE 523

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFPLY 811
           +     G+  + S   KG+   +  P+ 
Sbjct: 524 LCKLLGGEVKVESEFGKGSTFVVRIPIS 551


>gi|77462106|ref|YP_351610.1| sensory transduction histidine kinase [Rhodobacter sphaeroides
           2.4.1]
 gi|77386524|gb|ABA77709.1| Probable sensory transduction histidine kinase [Rhodobacter
           sphaeroides 2.4.1]
          Length = 855

 Score =  295 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 107/592 (18%), Positives = 199/592 (33%), Gaps = 41/592 (6%)

Query: 241 SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQ-YTKKQYFGTLQNNSKES 299
           +            +             +   +E F  ++       +     L  N  + 
Sbjct: 15  APRLWQRLRLPAAVLVMLAGATAIIGLANDARERFQQLDYIVTDGVQTRLSDLDGNLSQF 74

Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDD 359
              L         A          E + +                     +L      + 
Sbjct: 75  ASALGVTGSSPSPAAVRTSLRQLQEGLAQLDTAM------------AEAGVLWDPAYGEG 122

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVM--LYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
           I               + +  +   M  L R+      A A L         S  +    
Sbjct: 123 IARLRQFERDRADLIAAPDATVTAAMPGLTRALPHLEQAVAELSATASADRESRNLENRA 182

Query: 418 FEKANQFPENMPQNGIE-----------PEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
              ++         G+               + +R           +L +I   ++D I 
Sbjct: 183 IIGSSIMRLVALTIGLVLMLSAGSFQLLRLYLRSREQAEAAGRASARLEAIFRISADAIL 242

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT-----PSVMNHYLTEILSLDL 521
           + +    ++  NRA   +FG+  E +        L            +   L       +
Sbjct: 243 VTDWSARVIDCNRAALAIFGHQRERLAGADAMELLFPAELQGRQRMRVVDALRN-SDPRI 301

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579
              L         +     + + +   ++         M DIS  ++ + +L+ A+  A 
Sbjct: 302 DGPLRLELEAVHADGSRFPVEVSLAAARVEGEDIIVALMRDISARRRAERELTEARDRAL 361

Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639
                K+DFLA +SHE+RTPL  + G  E++         +PR  E  + +  S  ++LD
Sbjct: 362 AGEQTKADFLAVMSHEMRTPLNGLAGSLELLAQTPL----DPRQRELVSVLRASAEILLD 417

Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS-FANNIPRIL 698
            VN +LDI++ E+           LD  + + I+    +A      I        +  + 
Sbjct: 418 HVNSVLDIARSEARPSVAEMVDFDLDRLIEDCIANQSGFAAVVGNRIDHRPLTGPVGILN 477

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
            + + ++Q+ LN+L+NA+ FT   G+II+ +      +V +RV DTG+G+    LEK   
Sbjct: 478 GEPQRLRQVLLNLLNNAVKFT-RNGRIIVESEVQ-GADVEIRVLDTGIGIAPENLEKVFD 535

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            F  +  S + R  GTGLGL +A+ +     G   + STP +G+   +  PL
Sbjct: 536 DFVTLDASYERRSGGTGLGLGIARRLARIMGGDLTVQSTPGRGSRFTLRLPL 587



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/323 (8%), Positives = 64/323 (19%), Gaps = 40/323 (12%)

Query: 168 IYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ 227
           +   +   S F     V  +           R  ++     +     + V  +       
Sbjct: 64  LSDLDGNLSQFASALGVTGSSPSPAAVRTSLRQLQEGLAQLDTAMAEAGVLWDPAYGEGI 123

Query: 228 QS------------PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDF 275
                           P   +   +  LT    H +  +           ES   E    
Sbjct: 124 ARLRQFERDRADLIAAPDATVTAAMPGLTRALPHLEQAVAELSATASADRESRNLENRAI 183

Query: 276 HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV 335
              ++ +         L  ++        +      +                      V
Sbjct: 184 IGSSIMRLVALTIGLVLMLSAGSFQLLRLYLRSREQAEAAGRASARLEAIFRISADAILV 243

Query: 336 YS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY------- 387
                 +   N + L +  ++  + +  A  +  L  A             L        
Sbjct: 244 TDWSARVIDCNRAALAIFGHQR-ERLAGADAMELLFPAELQGRQRMRVVDALRNSDPRID 302

Query: 388 ----------RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
                      +D +       L   +   E+ +           +          E E 
Sbjct: 303 GPLRLELEAVHADGSRFPVEVSLAAARVEGEDIIVALMRDISARRRA---------EREL 353

Query: 438 VDTRINKRKMEIEVMQLCSILEA 460
            + R      E       +++  
Sbjct: 354 TEARDRALAGEQTKADFLAVMSH 376



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/265 (6%), Positives = 56/265 (21%), Gaps = 15/265 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID--PNNHIGDLLKRQNTWYGK 146
            D    + + +       G+   ++ G    ++     +       + D L+  +     
Sbjct: 244 TDWSARVIDCNRAALAIFGHQRERLAGADAMELLFPAELQGRQRMRVVDALRNSDPRIDG 303

Query: 147 TTLWPIE---GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                +E         P++++         +        ++                  +
Sbjct: 304 PLRLELEAVHADGSRFPVEVSLAAARVEGEDII----VALMRDISARRRAERELTEARDR 359

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE------ 257
                + K    +V   +              +        +           E      
Sbjct: 360 ALAGEQTKADFLAVMSHEMRTPLNGLAGSLELLAQTPLDPRQRELVSVLRASAEILLDHV 419

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
              L  +   + P   +    +L++  +          +              +     E
Sbjct: 420 NSVLDIARSEARPSVAEMVDFDLDRLIEDCIANQSGFAAVVGNRIDHRPLTGPVGILNGE 479

Query: 318 GENLTPETVDKCPIPFFVYSHGNLF 342
            + L    ++          +G + 
Sbjct: 480 PQRLRQVLLNLLNNAVKFTRNGRII 504


>gi|29347433|ref|NP_810936.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|29339333|gb|AAO77130.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 720

 Score =  295 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 107/545 (19%), Positives = 206/545 (37%), Gaps = 53/545 (9%)

Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF----FVYS-HGNLFY-- 343
           +L   +     +L    H        E        V+  P+ +     ++   G +    
Sbjct: 195 SLMALAVIYVIWLRRALHERSRLL--EIMRSYSSLVENMPVLYARVELIFDPGGRIIDYV 252

Query: 344 ---ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400
               NP+F         + I            P  S     +   L   D   I     L
Sbjct: 253 YREVNPTFEKY--ILPKEKILGKKYSE---LNPDYSPELPDRYSELN--DNRQITFQYYL 305

Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
                  +    +T I      +       +    ++ +  + ++ ++    +L + L+A
Sbjct: 306 E------KTKTHLTVISIHSKTKGC----VDVFGVDNTELVLTQQMLKSTNHKLSAALDA 355

Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF--------LEQNTPSVMNHY 512
                   +    +LS N +   L+    E        +         +       +   
Sbjct: 356 ADMTPWKWDLRTGLLSCNVS-HDLYVTEEEVTHDGNLIIVPTSACFAKICDEDRERVRDA 414

Query: 513 LTEILSLDLRQTLEKITLGST-----KEEKLLSLRIIIKKLPFSS---CYSLTMHDISEW 564
              + + + ++  E+  +G       ++ + + +R  + +   +        T   +++ 
Sbjct: 415 FEHLANGETQKMREEYRVGRQWLPSPQQNEWVEVRAAVDERDANGKPLSLIGTSMTVTQR 474

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           K+ +  L  AK  AE+ ++ KS FLA +SHEIRTPL AI+GFS ++ +   G   +    
Sbjct: 475 KEMEEALVQAKVKAEEANTLKSSFLANISHEIRTPLNAIVGFSSLLVSAERGI--SEEKQ 532

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           EY N I+ +  L+L +++D+LD+SKIE+G M   + P+ +     E     +L   +  I
Sbjct: 533 EYINIIENNNTLLLQLISDVLDLSKIEAGTMEFDYAPIDVHGLFIELEDTFRLRNKKSGI 592

Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744
            I          + AD   + Q+ +N+++NA+ FT  G  I        +  +   V DT
Sbjct: 593 CICYHRRTTECVVKADRNRLVQVMMNLMNNAVKFTGEGS-IEFGFDVREDGFLHFYVTDT 651

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G G+    LE+    F ++ +      +GTGLGL + +A+V+   GK    S   +G+  
Sbjct: 652 GCGIPEERLEEIFGNFVKLNSF----VQGTGLGLTICRAIVERMGGKIGAVSRLGQGSTF 707

Query: 805 EIIFP 809
               P
Sbjct: 708 WFTLP 712


>gi|51244211|ref|YP_064095.1| two-component system sensory/regulatory protein [Desulfotalea
           psychrophila LSv54]
 gi|50875248|emb|CAG35088.1| probable two-component system sensory/regulatory protein (hybrid
           family) [Desulfotalea psychrophila LSv54]
          Length = 910

 Score =  295 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 85/393 (21%), Positives = 152/393 (38%), Gaps = 37/393 (9%)

Query: 448 EIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
                +   I +ATS+ + + + +   +L  NR+   L G   + +             P
Sbjct: 371 RNAERKFVEIFDATSEAVLVCDIDTLQVLEFNRSSELLLGAEEQLVKLTDLRWNFCGEEP 430

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCYSLTMHDISEW 564
                +   I       +L           +     + +   ++    C  + + D+ + 
Sbjct: 431 YDDQAFQQLIERTVRDGSLTVDWQMKRYSGEKFWAGMTLNYMQIKDVDCLLVVIRDVEQR 490

Query: 565 -------------------------KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                                    ++ +  L  AK  AE+ +  KS F+A +SHEIRTP
Sbjct: 491 HQLAGELEAYKFHLEELVDQKTADLQRFQQDLITAKDEAERANQAKSTFVANMSHEIRTP 550

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  ++G +++++              Y   I  SG  +L  VND+LD +K+E+G++ +  
Sbjct: 551 LNGVLGLAQLLEKTSLSV----DQRSYVRRILDSGQQLLTTVNDILDFAKMEAGRLEIEE 606

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
              SL   +   I  V +   E         A  IP  ++ D   + Q+ +N+L NA+ F
Sbjct: 607 SGFSLHALLQPVIDSVFVE-EESSPKFCLDVAPGIPENLIGDRFRIGQVLINLLGNALKF 665

Query: 719 TPSGGQ--IIISTTHTSNEEVI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T  G     ++S        ++   + DTGVG+     ++   PF Q  +S      GTG
Sbjct: 666 TKEGHVSLHVVSMGLGEKGVILKFSIIDTGVGIALDVQKQLFVPFTQADSSVTRNYGGTG 725

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           LGL + K +V A  G   + S+P  G+      
Sbjct: 726 LGLTICKKLVVAMGGDIGLESSPGAGSTFWFTL 758



 Score = 40.0 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 14/149 (9%), Positives = 34/149 (22%), Gaps = 9/149 (6%)

Query: 314 YFDEGENLTPETVDKCPIPFFVYSHGN--LFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
                E    E  D       V       +   N S  LL    + + +     L     
Sbjct: 369 LQRNAERKFVEIFDATSEAVLVCDIDTLQVLEFNRSSELLLG--AEEQLVKLTDLRWNFC 426

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
             +  D+ A + ++        +    ++                      Q  +     
Sbjct: 427 GEEPYDDQAFQQLIERTVRDGSLTVDWQMKRYSGE-----KFWAGMTLNYMQIKDVDCLL 481

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEA 460
            +  +         ++E     L  +++ 
Sbjct: 482 VVIRDVEQRHQLAGELEAYKFHLEELVDQ 510


>gi|16330151|ref|NP_440879.1| sensory transduction histidine kinase [Synechocystis sp. PCC 6803]
 gi|1652639|dbj|BAA17559.1| sensory transduction histidine kinase [Synechocystis sp. PCC 6803]
          Length = 998

 Score =  295 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 81/258 (31%), Positives = 131/258 (50%), Gaps = 11/258 (4%)

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           +I E ++ + KL  AK+ AE  +  KS+FLA +SHEIRTP+ AI+GF +++  +    L 
Sbjct: 575 EIEERQRIEIKLREAKESAELANRVKSEFLANISHEIRTPMNAILGFCDLLLQKD---LS 631

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
             +  +Y N I  S  ++L +++D+LDISKIE+GK+ +H EPV L   + E   +    A
Sbjct: 632 LSQTKKYLNAIGSSSKILLALIDDILDISKIEAGKLVIHLEPVDLRVIIREIKQIFDYKA 691

Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTT---HTSN 734
             K +L+       + + I  D   ++QI  N++ NA+ FT  G   I I        S 
Sbjct: 692 ESKSLLLTIQIDETLNQAIYFDAVRLRQILFNLVGNALKFTEEGQVFIYIGVEGIQVRSQ 751

Query: 735 E---EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
                + + V DTG+G+   +  K    F Q       +  GTGLGL + + +     G+
Sbjct: 752 GTYISLAIEVTDTGIGIAPEDQAKIFDVFTQSQGQSTRKYGGTGLGLTITRRLTALLGGE 811

Query: 792 FYIFSTPAKGTLIEIIFP 809
             + S   +G+   + FP
Sbjct: 812 ISLSSRLGEGSTFILHFP 829


>gi|330874568|gb|EGH08717.1| sensory box histidine kinase [Pseudomonas syringae pv. morsprunorum
           str. M302280PT]
          Length = 595

 Score =  295 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 89/427 (20%), Positives = 172/427 (40%), Gaps = 28/427 (6%)

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK--R 445
            + R      A         E    +T  P   A +      + GI  E +         
Sbjct: 193 IARRFGAPIEALAKAADRIGEGDYEVTL-PISSAAEMNLLTRRFGIMAEALRQHQATNVD 251

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           ++     +L ++L++  DG+ +I+R+G +   N    +  G+    + +           
Sbjct: 252 ELLAGQQRLQAVLDSIDDGLLMIDRQGHLEHLNPVAQRQLGWDESRLGQSLGEALSRPEL 311

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISE 563
              ++  L         + L         E +LL+  +              + +HD++E
Sbjct: 312 DEQLHLVLRGGTLERAPEDLAIEI---DGESRLLTYSMTPVSHTKGHILGAVMVLHDVTE 368

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            +  +                +S+F+ R SHE+RTP+T  +  +  +  +R       R 
Sbjct: 369 QRAFE--------------RVRSEFVLRASHELRTPVTG-MHMAFGLLQERLHFAPESRE 413

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            +  N +      ++ ++NDLL+ S+ ++G   L   P S++  + EA +  +  A E+ 
Sbjct: 414 ADLLNTVTEEMQRLMQLINDLLNFSRYQNGLQKLKLAPCSIETLLEEAKARYEGQAQEQD 473

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
           I++       +PR+ AD   ++++  N+L NA+  TP  G I +       E  I+ V D
Sbjct: 474 IVLMLDIQEPMPRLHADQSQLERVLDNLLDNALRHTPPNGLIRLQ-ARRHGERAIISVED 532

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
            G G+   +  +  +PF Q+      +  G GLGL L K +V  + G+  ++S P +GT 
Sbjct: 533 NGEGIAYGQQGRIFEPFVQV----GRKKGGAGLGLALCKEIVQLHGGRMGVYSRPGQGTQ 588

Query: 804 IEIIFPL 810
             +  PL
Sbjct: 589 FYMALPL 595



 Score = 45.4 bits (106), Expect = 0.038,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 69/241 (28%), Gaps = 9/241 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G+L+ ++    + +G    + +G  L +      +D       L+ R  T      
Sbjct: 274 IDRQGHLEHLNPVAQRQLGWDESR-LGQSLGEALSRPELDEQ---LHLVLRGGTLERAPE 329

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
              IE       +  +  P+        G     ++H          +  R +      H
Sbjct: 330 DLAIEIDGESRLLTYSMTPVSHTKGHILGA--VMVLHDVTEQRAFERV--RSEFVLRASH 385

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           E++   + +      +  +    P  R  + ++++TE    +   L  +       +   
Sbjct: 386 ELRTPVTGMHMAFGLLQERLHFAPESREADLLNTVTE-EMQRLMQLINDLLNFSRYQNGL 444

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
              +    +I       K  +                   P L A   + E +    +D 
Sbjct: 445 QKLKLAPCSIETLLEEAKARYEGQAQEQDIVLMLDIQEPMPRLHADQSQLERVLDNLLDN 504

Query: 329 C 329
            
Sbjct: 505 A 505


>gi|295704406|ref|YP_003597481.1| two-component sensor histidine kinase [Bacillus megaterium DSM 319]
 gi|294802065|gb|ADF39131.1| two-component sensor histidine kinase [Bacillus megaterium DSM 319]
          Length = 695

 Score =  295 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 99/511 (19%), Positives = 205/511 (40%), Gaps = 41/511 (8%)

Query: 313 AYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
              +  +      ++       +    G +   N ++  +  +KS + I          D
Sbjct: 212 KELEYTKEQLESFINHHMDAVIITDLEGRILRVNEAYEKVYGWKSHEVIGEK-----YYD 266

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
                  +  + +    +++  I     +   + +  + + +        N   E +  +
Sbjct: 267 IAGAFSEDVHENIKKTVAEKEAIN-RVEVVRARKDG-SLVDLRITISPIFNGKDELVGLS 324

Query: 432 GIEPEDVDTRIN-------KRKMEIEVMQLCSILEATSDGIAI--INREG---IILSTNR 479
           G+  +  + +          R+++   ++  ++ E  +D I +  I  +      +  N 
Sbjct: 325 GVCVDISEAKKAKEELDLLHRRLKESELKYRTLFEYANDAIYLLEIGSDHFPSRFVEVNE 384

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
           A  K  GY  E++L  P    +      ++   + EI + +L  TL+      + E K L
Sbjct: 385 AGCKRLGYTREELLSMPCHDII-PRDSDIVQKTVEEIRNGNLSFTLQSQFTFKSGEIKKL 443

Query: 540 SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                +  +       +   D +E+ + +  L  ++K+A             ++HEIR P
Sbjct: 444 EYSGKLFNIENKKVLLIVSRDRTEYLKTEELLQKSEKLA-----AVGQLATAIAHEIRNP 498

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           LTAI GF +++  +      +   + Y N I      +  I N+ + ++K ++    + F
Sbjct: 499 LTAIKGFMQLLTEK-----ASKEELTYMNIISSEIERIERITNEFMSVAKPQA----VTF 549

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719
           + + L   + + I L+Q  A  K I I  +    +P +  +   +KQ+ +NIL NAI   
Sbjct: 550 QSIDLQLLIQQVILLLQPQATMKNIFIELNSYGEMPFVYCESNQMKQVFINILKNAIEAM 609

Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
           PSGG+I +      N  + +++ D GVG++   ++   +PF        I+ +G GLGL 
Sbjct: 610 PSGGEIKVELRKKDNNHIHIQIIDEGVGISKERIKHLGEPFY------SIKEDGIGLGLM 663

Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           +   ++  + G   I S   KGT +EI  PL
Sbjct: 664 ICFNIIQQHQGTLSIDSEVNKGTSVEICLPL 694



 Score = 85.8 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 63/153 (41%), Gaps = 6/153 (3%)

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
           E +    RI K+++E    QL S +    D + I + EG IL  N A  K++G+   +++
Sbjct: 201 EEDSFFVRIMKKELEYTKEQLESFINHHMDAVIITDLEGRILRVNEAYEKVYGWKSHEVI 260

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS- 552
            + +       +  V  +    +   +    +    + + K+  L+ LRI I  +     
Sbjct: 261 GEKYYDIAGAFSEDVHENIKKTVAEKEAINRV--EVVRARKDGSLVDLRITISPIFNGKD 318

Query: 553 ---CYSLTMHDISEWKQEKNKLSHAKKIAEKES 582
                S    DISE K+ K +L    +  ++  
Sbjct: 319 ELVGLSGVCVDISEAKKAKEELDLLHRRLKESE 351



 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/168 (12%), Positives = 57/168 (33%), Gaps = 4/168 (2%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            D  G +  ++E   K  G  + ++IG +  D++     D + +I   +  +        
Sbjct: 235 TDLEGRILRVNEAYEKVYGWKSHEVIGEKYYDIAGAFSEDVHENIKKTVAEKEAINRVEV 294

Query: 149 LW-PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
           +    +G+ + + I ++  PI++   E  G  G  +  ++        L     +     
Sbjct: 295 VRARKDGSLVDLRITIS--PIFNGKDELVGLSGVCV-DISEAKKAKEELDLLHRRLKESE 351

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255
            + +          Y +       P   ++   +        ++++L 
Sbjct: 352 LKYRTLFEYANDAIYLLEIGSDHFPSRFVEVNEAGCKRLGYTREELLS 399


>gi|116624258|ref|YP_826414.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116227420|gb|ABJ86129.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 856

 Score =  295 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 99/715 (13%), Positives = 209/715 (29%), Gaps = 63/715 (8%)

Query: 122 SDILHIDPNNHIGDLLKR--------QNTWYGKTTLWPIEGTNLYVPIDLAALP-IYSRN 172
           +     D       +++         ++   G  +   + G + Y+      LP +    
Sbjct: 37  AFREAADRATRSRAVMETSQRLFSLLRDADSGHRSYL-LTGDSRYLAAYNGTLPKLQDAM 95

Query: 173 REFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHS-SVEKEKYDIFSQQSPP 231
           R+ +G  G               L +      + L E+ +G     + +           
Sbjct: 96  RDLTGATG----------PAAPELTRFAAIIHAKLDELAQGIRIRQQGDAAAAMEIVRSD 145

Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291
              +  +++ + +      +                                        
Sbjct: 146 RGRQSMDELRAFSAQIVQNEYPRLEGWRA-SAMHHGYQTRVLVQVGALGLALMLFFANRR 204

Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLL 350
           + +      + +   +        D        T+             G + + N     
Sbjct: 205 INHLLHSQQKLIEDLDASRERESRD--RAALATTLRSIGDAVITTDGQGRVQFVNAVAEA 262

Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
           LT + + D       L  +  A   +     + +         +   A    +       
Sbjct: 263 LTGWTAGDAEGRP--LPDVFRAEDEATRRPAEDLTARVLREGALVGPANHTILVARDGRE 320

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN- 469
           + +        ++         +  +    R  +R +E    +   + E+    + + + 
Sbjct: 321 IPIDDSAAPIHDEQGNIAGVVLVFRDVTLRRRAQRHLEDSESRYRLLFESNPSPMWVYDT 380

Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
                L+ N A +  +GY  E+ L               +   + +          +   
Sbjct: 381 ATLAFLAVNAAATAHYGYSREEFLSMTLRDIRPPEDVPAL---IADTHIPTTEAHTDGPW 437

Query: 530 LGSTKEEKLLSLRIIIKKL--PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
               K+  ++ + I    +    ++   +   DI+E +  + +L  A+K+          
Sbjct: 438 RHRKKDGSVIFVEITAHPICFGGANAVLVMATDITERRGLEEQLRQAQKL-----EAVGQ 492

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
               ++H+    LT I G++E+I   R     +    E  + I  +      +   LL  
Sbjct: 493 LAGGIAHDFNNLLTVIEGYAEMI---RADQAADDPQREPLDEILVAAQRAASLTRQLLAF 549

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707
           S+    +  L    +SL+  V+    ++      + I I+   A N+  + AD   + QI
Sbjct: 550 SR----RQVLQPVRLSLNANVASTQRMLS-RLLGEDIQIKIQAAENLWDVWADPGQIDQI 604

Query: 708 ALNILSNAIHFTPSGGQIIISTT-------------HTSNEEVILRVRDTGVGMTNYELE 754
            LN+  NA      GG + I T+              T  +   L + DTG GM      
Sbjct: 605 ILNLAVNARDAMQRGGTLTIETSNLELSESEARKLDTTPGQYTSLSLSDTGHGMDEETRR 664

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
              +PF          G GTGLGL     +V  + G   + S P KG+   I  P
Sbjct: 665 HIFEPFFTTK----EVGRGTGLGLSTVWGIVKQSGGFIRVTSEPGKGSRFAICLP 715



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 38/315 (12%), Positives = 82/315 (26%), Gaps = 21/315 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID----PNNHIGDLLKRQNTW- 143
            D  G ++ ++       G  A    G  L DV             +    +L+      
Sbjct: 247 TDGQGRVQFVNAVAEALTGWTAGDAEGRPLPDVFRAEDEATRRPAEDLTARVLREGALVG 306

Query: 144 -YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
               T L   +G    +PID +A PI+      +G     +     +    +   +  + 
Sbjct: 307 PANHTILVARDGR--EIPIDDSAAPIHDEQGNIAGV--VLVFRDVTLRRRAQRHLEDSES 362

Query: 203 KFSHLHEIKKGHSSVEKEK-----YDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257
           ++  L E       V             +  +   + R +    +L +    +D      
Sbjct: 363 RYRLLFESNPSPMWVYDTATLAFLAVNAAATAHYGYSREEFLSMTLRDIRPPEDVPALIA 422

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
              + T+E         +     +                 +   L      +     +E
Sbjct: 423 DTHIPTTEA---HTDGPWRHRKKDGSVIFVEITAHPICFGGANAVLVMATDITERRGLEE 479

Query: 318 GENLTP--ETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
                   E V +       +   NL      +  + +     D      L  +L A + 
Sbjct: 480 QLRQAQKLEAVGQLAGGIA-HDFNNLLTVIEGYAEMIRADQAADDPQREPLDEILVAAQR 538

Query: 376 SDNNAIKPVMLYRSD 390
           + +   + +   R  
Sbjct: 539 AASLTRQLLAFSRRQ 553


>gi|320332920|ref|YP_004169631.1| PAS/PAC sensor signal transduction histidine kinase [Deinococcus
            maricopensis DSM 21211]
 gi|319754209|gb|ADV65966.1| PAS/PAC sensor signal transduction histidine kinase [Deinococcus
            maricopensis DSM 21211]
          Length = 1020

 Score =  295 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 94/756 (12%), Positives = 213/756 (28%), Gaps = 49/756 (6%)

Query: 93   GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN-HIGDLLKRQNTWYGKTTLWP 151
            GYLK  S  L   +G     +IG  + +                + + +    G+     
Sbjct: 281  GYLKYASPSLQTLLGYEQDALIGRNVMEFIHPDDQAAARTAFMPVAEGETGATGQHASRY 340

Query: 152  IEGTNLYVPIDLAALPIYSRNREFSGFRGFGI-VHVNRVDNDPRALGKRLDKKFSHLHEI 210
             +    Y  ++  A              G  +               K  +++F  L   
Sbjct: 341  RQRNGEYCWMEWVATNHILD----PHVGGIVMNSRDVTARMAAEEAVKASERRFRTLVHN 396

Query: 211  KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE------YYAHKDDVLKTEKYPLLTS 264
                 ++      I         L  +     +        +    D++       +   
Sbjct: 397  SSDIITIINRGGFITYTSPSVHALLGQGGPWDVGAKVLDFMHPDEHDEIRAVFAQVVAGG 456

Query: 265  EESSLPEQEDFHTINLNQYTKKQYFG---TLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
              ++      F   +    + +          +                  A     E  
Sbjct: 457  AGATARNTNRFLHADGTYRSVEWEITNHVDNPDVRGIVMNSRDVTARLEAEAALRASERR 516

Query: 322  TPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
                V         V   G + Y +P    L  +     I    G   L        +  
Sbjct: 517  FRTLVQNSSDIVTIVNRGGYVTYISPPVETLLGHVGSWMI----GTDVLEFMHPDEHDEI 572

Query: 381  IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
                           A      +  N                  P+         +  + 
Sbjct: 573  RSAFTRVVEGGPGTTARMTNRFLHDNGTYRWMEWV--ATNHLHDPDVRGVVMNTRDVSER 630

Query: 441  RINKRKMEIEVMQLCSILEATSDGI--AIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
            +  +  +E        + + + D I     + +  I++ N   +++ GY  E+++ +   
Sbjct: 631  KAIEDALEESRRTFEVLFDESPDSIMLVAFDGDMPIVNCNEVAARMKGYAREELIGQSTY 690

Query: 499  VFLEQNTPSVMNHYLTEILSL--DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--Y 554
            + L      + + +  +           L   +    K+  +  + I +  L        
Sbjct: 691  IALPNRDELLADPHANDAFRAQVRAEGRLHFESDLVRKDGSIFPVDIHLVLLNLGGREML 750

Query: 555  SLTMHDISEWKQEKNKLSHAKKIAEKESSH--KSDFLARVSHEIRTPLTAIIGF---SEV 609
                 DI+E +     L  ++                A ++HEI TPL + +     +  
Sbjct: 751  LSVERDITERRATDAALRASQARLLASEKLAGLGRLTAGLAHEINTPLASTLNELHEAAR 810

Query: 610  IKNQRFGPLG-----NPRYIEY---ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
            +  +    +G     +  + E          +       + D +   +  +       + 
Sbjct: 811  LAQEYRDSIGAPGVNDDDHREIASELAAAVDAATRNTTRIGDFIRKMRSHTRDTVTGRQT 870

Query: 662  VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
                ++V++ ++++   A    + +      +  ++  +     Q+  N++ NAIH   S
Sbjct: 871  FDAVKSVNDTLTMLAHEARSANVSLLFEQPRDAVQLTGEPGRFTQVITNLVVNAIHACSS 930

Query: 722  GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
            G  + +    T      + V+DTG G+    L +  +P     +     G+GTGLGL + 
Sbjct: 931  GASVTVRFG-THEGVPTVEVQDTGSGIAPDVLPRIFEPMFTTKD----VGQGTGLGLSII 985

Query: 782  KAMVDAN-MGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
              +V  +  G  ++ +T   GT   + FP  + + P
Sbjct: 986  HDIVTGHFGGDIHVTTTLGAGTTFTVHFP--EAAPP 1019



 Score =  137 bits (344), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 47/498 (9%), Positives = 121/498 (24%), Gaps = 26/498 (5%)

Query: 93  GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPI 152
           G + + ++     IG      +G     ++  + +     +   ++              
Sbjct: 157 GRVMDANDAFLDIIGLPRDAFVGSTNDTLNPWMDLSDRERLVRAIQAG-PVREFEARLRH 215

Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIV-HVNRVDNDPRALGKRLDKKFSHLHEIK 211
             T     + ++   +     E  G     I+           A  +  +++F  + +  
Sbjct: 216 VPTGEARDVLMSTEAL-----ELEGEEVILILTQDVTERRRAEAAAQANEQRFRAMVQHS 270

Query: 212 KGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
               ++      +                  +      + H DD        +  +E  +
Sbjct: 271 SDLLTIVTRGGYLKYASPSLQTLLGYEQDALIGRNVMEFIHPDDQAAARTAFMPVAEGET 330

Query: 269 LPEQE---DFHTINLNQYTKKQYFG---TLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
               +    +   N      +          +               +        E   
Sbjct: 331 GATGQHASRYRQRNGEYCWMEWVATNHILDPHVGGIVMNSRDVTARMAAEEAVKASERRF 390

Query: 323 PETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
              V         +   G + Y +PS   L       D+  A  L      P   D    
Sbjct: 391 RTLVHNSSDIITIINRGGFITYTSPSVHALLGQGGPWDV-GAKVLD--FMHPDEHDEIRA 447

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
               +         A      +  +                  P+         +     
Sbjct: 448 VFAQVVAG-GAGATARNTNRFLHADGTYRSVEW--EITNHVDNPDVRGIVMNSRDVTARL 504

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
             +  +     +  ++++ +SD + I+NR G +   +  V  L G+    ++      F+
Sbjct: 505 EAEAALRASERRFRTLVQNSSDIVTIVNRGGYVTYISPPVETLLGHVGSWMIGTDVLEFM 564

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK---KLPFSSCYSLTM 558
             +    +    T ++      T                +  +       P      +  
Sbjct: 565 HPDEHDEIRSAFTRVVEGGPGTTARMTNRFLHDNGTYRWMEWVATNHLHDPDVRGVVMNT 624

Query: 559 HDISEWKQEKNKLSHAKK 576
            D+SE K  ++ L  +++
Sbjct: 625 RDVSERKAIEDALEESRR 642



 Score =  133 bits (335), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 59/526 (11%), Positives = 129/526 (24%), Gaps = 34/526 (6%)

Query: 86  TWNIDAH-GYLKEISEELPKTIGNYAFKMI--GMRLCDVSDILH-IDPNNHIGDLLKRQN 141
            W  D   G    +SE++   +G    + +                     +    +   
Sbjct: 21  VWQGDPATGSSTYVSEKITALLGYTPQQWMSNPHFWESSIHPDDRAQTLADLERFTRTGE 80

Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
            +  +      +G    V +     P+   +       G  ++          A  +   
Sbjct: 81  PFALEYRACRADGR--VVWLRDVTTPLV-EDGRLVALGG--VMLDITAQKQAEAGLRAAR 135

Query: 202 KKFSHLHEIKK-----------GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK 250
            +F  +                          DI             + ++   +    +
Sbjct: 136 DRFEKVFAASPVGIALTGLYSGRVMDANDAFLDIIGLPRDAFVGSTNDTLNPWMDLSDRE 195

Query: 251 DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310
             V   +  P+   E                          L+                 
Sbjct: 196 RLVRAIQAGPVREFEARLRHVPTG----EARDVLMSTEALELEGEEVILILTQDVTERRR 251

Query: 311 LSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
             A     E      V         V   G L YA+PS   L  Y+  D +     +  +
Sbjct: 252 AEAAAQANEQRFRAMVQHSSDLLTIVTRGGYLKYASPSLQTLLGYE-QDALIGRNVMEFI 310

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
                  D  A +   +  ++    A        +        M ++        P    
Sbjct: 311 HPD----DQAAARTAFMPVAEGETGATGQHASRYRQRNGEYCWMEWVATNHIL-DPHVGG 365

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
                 +       +  ++    +  +++  +SD I IINR G I  T+ +V  L G   
Sbjct: 366 IVMNSRDVTARMAAEEAVKASERRFRTLVHNSSDIITIINRGGFITYTSPSVHALLGQGG 425

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII---K 546
              +      F+  +    +     ++++     T          +    S+   I    
Sbjct: 426 PWDVGAKVLDFMHPDEHDEIRAVFAQVVAGGAGATARNTNRFLHADGTYRSVEWEITNHV 485

Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
             P      +   D++   + +  L  +++       + SD +  V
Sbjct: 486 DNPDVRGIVMNSRDVTARLEAEAALRASERRFRTLVQNSSDIVTIV 531



 Score = 91.6 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 36/384 (9%), Positives = 92/384 (23%), Gaps = 27/384 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL---KRQNTWYG 145
           I+  G++   S  +   +G      +G ++ D       D    +   +       T   
Sbjct: 404 INRGGFITYTSPSVHALLGQGGPWDVGAKVLDFMHPDEHDEIRAVFAQVVAGGAGATARN 463

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI-VHVNRVDNDPRALGKRLDKKF 204
                  +GT  Y  ++                RG  +         +  A  +  +++F
Sbjct: 464 TNRFLHADGT--YRSVEWEITNHVDN----PDVRGIVMNSRDVTARLEAEAALRASERRF 517

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR------MKNKVSSLTEYYAHKDDVLKTEK 258
             L +      ++      +     P   L       M         +    D++     
Sbjct: 518 RTLVQNSSDIVTIVNRGGYVTYISPPVETLLGHVGSWMIGTDVLEFMHPDEHDEIRSAFT 577

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFG---TLQNNSKESFEYLSHRNHPSLSAYF 315
             +     ++      F   N      +          +               ++    
Sbjct: 578 RVVEGGPGTTARMTNRFLHDNGTYRWMEWVATNHLHDPDVRGVVMNTRDVSERKAIEDAL 637

Query: 316 DEGENLTPETVDKCPIPFFVYSHGN---LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
           +E         D+ P    + +      +   N     +  Y   + I  +  ++     
Sbjct: 638 EESRRTFEVLFDESPDSIMLVAFDGDMPIVNCNEVAARMKGYAREELIGQSTYIALPNRD 697

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
             L+D +A             +   + L        +   +            E +    
Sbjct: 698 ELLADPHANDAFRAQVRAEGRLHFESDLVR---KDGSIFPVDIHLVLLNLGGREML--LS 752

Query: 433 IEPEDVDTRINKRKMEIEVMQLCS 456
           +E +  + R     +     +L +
Sbjct: 753 VERDITERRATDAALRASQARLLA 776



 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/143 (13%), Positives = 44/143 (30%), Gaps = 11/143 (7%)

Query: 448 EIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILRKPFTVF--LEQN 504
           +  + +L  +++     +   +   G     +  ++ L GY  +  +  P      +  +
Sbjct: 7   KAALDRLSLMIDGV---VWQGDPATGSSTYVSEKITALLGYTPQQWMSNPHFWESSIHPD 63

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL---TMHDI 561
             +     L                     + +++ LR +   L            M DI
Sbjct: 64  DRAQTLADLERFTRTGEP--FALEYRACRADGRVVWLRDVTTPLVEDGRLVALGGVMLDI 121

Query: 562 SEWKQEKNKLSHAKKIAEKESSH 584
           +  KQ +  L  A+   EK  + 
Sbjct: 122 TAQKQAEAGLRAARDRFEKVFAA 144


>gi|266619278|ref|ZP_06112213.1| putative response regulator receiver domain protein [Clostridium
           hathewayi DSM 13479]
 gi|288869195|gb|EFD01494.1| putative response regulator receiver domain protein [Clostridium
           hathewayi DSM 13479]
          Length = 875

 Score =  295 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 92/378 (24%), Positives = 162/378 (42%), Gaps = 17/378 (4%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRKPFTV 499
              ++++        ++  +  D   I +   G I      V ++ G PV+ +  +    
Sbjct: 218 HRQRKELTYRSKLFDNLSLSIDDAFIIRDAGTGAINYRGLNVERILGIPVDYV--ESLYQ 275

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF--SSCYSLT 557
            + +     +      +         E++   +    +   + I I ++    +      
Sbjct: 276 GMPEEDAQALRE---GVSDPQFASPFERMVEYTKPNREKCWMLIRIYRVEDLKTPQLITV 332

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
             D +E  + +  L  A   AE+ +  KS+FL+R+SHEIRTPL AIIG + +       P
Sbjct: 333 FSDRTEEVRSRQILQEAMTNAEQANMAKSEFLSRMSHEIRTPLNAIIGMTTIAAAVVRDP 392

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
               R  +  + I  S   +L ++ND+LD+SKIES  M L  EP  + E ++  +S V  
Sbjct: 393 ---ARVEDCLSKITFSSRHLLMLINDVLDMSKIESRSMILQQEPFDMFEIINGFVSTVYA 449

Query: 678 YANEKRILIRTSFAN--NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH---- 731
               K I  + +          + D   + QI  N+ SNA+ FTP GG+I +  +     
Sbjct: 450 QTKAKGIEFQETMEGFGEDAIFIGDSLRLNQILFNLSSNAVKFTPPGGKIRLEVSRYRGR 509

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
            + + +   + DTG+GMT   +E+  +PF Q   S      GTGLG+ + + ++    G 
Sbjct: 510 NTADMIRFTLSDTGIGMTKEAVERVFQPFEQADASIAKLYGGTGLGMSITRNLITLMGGC 569

Query: 792 FYIFSTPAKGTLIEIIFP 809
             + S P  GT   +  P
Sbjct: 570 IRVDSEPGVGTACIVELP 587


>gi|332702262|ref|ZP_08422350.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332552411|gb|EGJ49455.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 556

 Score =  295 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 87/377 (23%), Positives = 156/377 (41%), Gaps = 27/377 (7%)

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED--ILRKPFTVFLEQNT----PS 507
           L + + +  DG+ + + E  +   N A  ++FG   E+  +      + L        P 
Sbjct: 36  LEAAIASMPDGVMVFDAELRLARANPAARRIFGLGSEECRLSVTDLALVLLPARLGGTPL 95

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWK 565
            +                E++      + + L                  +T+ DIS+  
Sbjct: 96  SVEDMPWMRAWRGEAVASERLMANVGGQTRHLLCSAAPIASGPDGRLGVVVTVRDISDQI 155

Query: 566 QEKNKLSHAKKIAEK-------ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
              ++                  S  KS FLA +SHEIRTPL  I+G +E+         
Sbjct: 156 DADSQREALLLELRLAKAAAEDASRAKSLFLANMSHEIRTPLNGIMGMTEL----ALAKE 211

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
                 +Y   + +S + +LDIVND+LD+S++ESG+  L      + + +  A+  + L 
Sbjct: 212 PRKEVRQYLELLKQSAHSLLDIVNDILDLSRVESGETQLVLREFVVRDELEAAVRPLALS 271

Query: 679 ANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQ---IIISTTHTS- 733
           A +K +      A ++P IL  D + ++QI +N+  NA+ FT  GG    + I       
Sbjct: 272 AKQKGLAFSMDVAPDVPEILTGDPQRLRQIMINLTGNAVKFTRQGGIAVLVDIDALDRDP 331

Query: 734 -NEEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
              +V++  +VRDTG+G+    L    + F            GTGLGL +++ +V+   G
Sbjct: 332 RGGKVLMHAQVRDTGIGIAPEHLANVFERFFTTAALDCPDSGGTGLGLAISRRLVEMMDG 391

Query: 791 KFYIFSTPAKGTLIEII 807
           + ++ S   +G+     
Sbjct: 392 EIWVESVQGRGSTFHFT 408



 Score = 47.3 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/147 (11%), Positives = 38/147 (25%), Gaps = 6/147 (4%)

Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVD 358
            + L  R +    A  D  +      +   P    V+     L  ANP+   +    S +
Sbjct: 14  RQGLQSRRYVFPEAIADAIQPSLEAAIASMPDGVMVFDAELRLARANPAARRIFGLGSEE 73

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPV--MLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
                  L+ +L   +L            +       +A+   +  +      +  +   
Sbjct: 74  CRLSVTDLALVLLPARLGGTPLSVEDMPWMRAWRGEAVASERLMANV---GGQTRHLLCS 130

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRIN 443
               A+     +       +  D    
Sbjct: 131 AAPIASGPDGRLGVVVTVRDISDQIDA 157


>gi|218133952|ref|ZP_03462756.1| hypothetical protein BACPEC_01841 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991327|gb|EEC57333.1| hypothetical protein BACPEC_01841 [Bacteroides pectinophilus ATCC
           43243]
          Length = 874

 Score =  295 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 109/569 (19%), Positives = 209/569 (36%), Gaps = 52/569 (9%)

Query: 279 NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT--PETVDKCPIPFF-- 334
                   Q +  L          +      +L A  D            +  P      
Sbjct: 260 READQIVSQTYALLAVVIMTIVVIMIITMRRTLKASRDAENQNLYTEHIFNNVPEGIALI 319

Query: 335 -VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393
            + +       N +   +  Y +  D +    +   +       ++           R  
Sbjct: 320 TINAPYINIRMNYAGYQMFGYDN--DSKNNVCIDHFIYNEDY--DHVTGVFDEAAQGRGP 375

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM----EI 449
                R   I+      + +  I     +    ++       +  + ++ + +     + 
Sbjct: 376 CTYECR---IRRADGMLIWIAGIVERNHDNNGNDILMT-TFHDITEEKLAREEEAVKNKR 431

Query: 450 EVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDI-----LRKPFTVFLEQ 503
           E   L + +  +   IA +N     +     ++ +LF   V        L +     +E 
Sbjct: 432 ERRMLITAVTESYSIIASLNITRDELQFI--SLRELFADSVSRAGTYNELYERIAERIEP 489

Query: 504 NTPSVMNHYLT----EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----S 555
                          E+     R  +         +     L I I  +   +      +
Sbjct: 490 KYEDEFRQRFAPDKVELSFAKGRSRIWTDIRLRLDDGIYHWLSIQIIHVRNRNNSKEINA 549

Query: 556 LTMHDISEWKQEKNK-----LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
           + +  IS+ ++ +       L  A   A+  +  KS FL+ +SH+IRTPL +IIG ++++
Sbjct: 550 VFLARISDEQKIEEANQKRNLQDALSAAKLANEAKSRFLSNMSHDIRTPLNSIIGMTDIL 609

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
           K+    P    +  E  + I  SG  +L+++ND+LD+S+IESGKM+L     ++   +SE
Sbjct: 610 KSH---PDDTKQVEEGLDKISMSGRHLLELINDILDMSRIESGKMSLQESGFNIRAMMSE 666

Query: 671 AISLVQLYANEKRILIRTSF-ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
            I LV+  A    I   +   +     ++ D   +KQI LNILSNA+ +T +GG I I+ 
Sbjct: 667 LIELVRPQALGSGITFISDIVSIEHDNVIGDELRIKQIYLNILSNAVKYTWAGGSITITL 726

Query: 730 THTSNEEV--------ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
               + +V        I    D G+GM+    +     F +  ++      GTGLG+ +A
Sbjct: 727 --REDGDVKNGRRHSYIFICSDNGIGMSREFQKHIFDSFERAEDNAIGNVTGTGLGMAIA 784

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           + +V+   G   + S   KG++  +  PL
Sbjct: 785 RNLVNLMGGTIDVDSRLGKGSVFTVTIPL 813


>gi|194366813|ref|YP_002029423.1| histidine kinase [Stenotrophomonas maltophilia R551-3]
 gi|194349617|gb|ACF52740.1| histidine kinase [Stenotrophomonas maltophilia R551-3]
          Length = 1175

 Score =  295 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 121/651 (18%), Positives = 228/651 (35%), Gaps = 53/651 (8%)

Query: 185  HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244
                +  DP+    R   + +      +G                 P  L+ ++    L 
Sbjct: 411  TDALMRYDPKRRDLRRWGRDAGADATMEGVIESMMTCDGDSLWLMLPAGLQQRDLDGRLR 470

Query: 245  EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
                +    L+  +  L                  L    + + F  +      +   L 
Sbjct: 471  RQLDNGQRGLQQGQLNLDVECGPQDHIWLASSRGLLQWLPESERFQPVPGAPATAIHALH 530

Query: 305  HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSVDDI--E 361
                  +    D   +               +S G L   A           S   +  +
Sbjct: 531  VGRDGQVWLSEDGRLSRYR------------WSQGRLERQAVIGAEQGYPAISASGLVVD 578

Query: 362  IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
              G          +      + V LY       +   R HT+  + +    +   P    
Sbjct: 579  AQGVAWATSARGLVRVGADGQSVRLYGVHDGLPSQEFREHTLTTSGD-GHLVAGTPAGVV 637

Query: 422  NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA---TSDGIAIINREGIILS-- 476
               PE +  +          I + ++      L    +     +DG    +R+  I++  
Sbjct: 638  VFDPEQVRPSV---RRAPLVIERVEVRRNEQVLDLTHDTPLQIADG----DRDLRIVARL 690

Query: 477  -------TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
                   +N    +L GY  + +   P    L    P        +  S D   +  +  
Sbjct: 691  LSFADSASNTYRYRLAGYDPDWVEVGPAGERLFSRLPPGSYRLEVQARSADHVWSRVQSL 750

Query: 530  LGSTKEEKLLSLR----IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
                +     SL     +    L  +S ++       + +       H +++AE+ S+ K
Sbjct: 751  EFRVQPPWWRSLSGLLVLASIALLLTSWFAWLYRRRLQRRHAYQLALHKQELAEQASAAK 810

Query: 586  SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
            + FLA + HEIRTP+T ++G SE++         +P+   Y   I  +G  +L +VND L
Sbjct: 811  TRFLANLGHEIRTPMTGVLGMSELLLASPL----DPQQRGYTQSIRHAGEHLLHLVNDAL 866

Query: 646  DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS--FANNIPRILADLRS 703
            D+++IESG++ L  +P +L   + +  +L+   A +K +           + +   D   
Sbjct: 867  DLARIESGRLELQSKPFALSRLLQDLAALMGPLAAQKGLRFTLDNQLPPGL-QATGDAMR 925

Query: 704  VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI---LRVRDTGVGMTNYELEKAMKPF 760
            V+QI LN+LSNA+ FT  G    I+    S+ E+      VRDTG G++  + ++  + F
Sbjct: 926  VRQILLNLLSNAVKFTSRG---TITLHARSDGELRALHFEVRDTGPGISQEQQQRLFRRF 982

Query: 761  GQIPNSQQI-RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             Q   ++   +  G+GLGL + + +  A  G+  + S   +GT   +  PL
Sbjct: 983  EQADGARTAAQYGGSGLGLAICRELAQAMQGRIQVESQLGRGTCFGVTLPL 1033


>gi|302039508|ref|YP_003799830.1| putative hybrid sensor histidine kinase [Candidatus Nitrospira
            defluvii]
 gi|300607572|emb|CBK43905.1| putative Hybrid sensor histidine kinase [Candidatus Nitrospira
            defluvii]
          Length = 1314

 Score =  295 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 125/818 (15%), Positives = 250/818 (30%), Gaps = 122/818 (14%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            +DA G L  ++      +G  A ++IG  +  +        +  +           G+  
Sbjct: 385  VDAQGTLLTVNTTTAAELGYEADELIGQPVARIVHPDD---HGSMEKHFADSLRRPGEVL 441

Query: 149  LW-----PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             W       +G+   + +  AA  + + + +F       +               +  + 
Sbjct: 442  RWNFRKLRKDGSL--LWVREAARAVRNSDGQFD---IIIVCENVTEQKGIEDALTQTRQL 496

Query: 204  FSHLHEIKKGHSSVEKE-KYDIFSQQSPPPHL--RMKNKVSSLTEYYAHKDDVLK---TE 257
               + E       ++   +            L    +  +    ++     +  +     
Sbjct: 497  LESIVEHIPHMVFLKDAQELRFVQFNKAGEDLIGLPREALLGKNDFDFFPLEQAEFFTAR 556

Query: 258  KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
               +LT         E   T +            L + +      L      +     +E
Sbjct: 557  DREVLTGGTMMDIPAEPIQTKDHGLRWLHTKKLPLYDQAGMPRYLLGISEDITDRKQREE 616

Query: 318  GENL-------TPETVDKCPIPFFVYSHG-------NLFYANPSFL-LLTKYKSVDDIEI 362
             E L           + +      ++S            YA  +F          D+ + 
Sbjct: 617  AERLRLGKLETQQAVLHELAEDPAIHSGHPQQAFPVITEYAVSTFAVERAGIWLFDEHQS 676

Query: 363  AGGLSTLLDA----------------PKLSDNNAIKPVMLYRSDRTCIAASARLHT---- 402
            A  L  L +A                P        +P  L   D      +  L      
Sbjct: 677  ALILQDLFEATPKHHLQGTTLSTGEYPAYLHALETEPYSLAAHDAQTDPRTKELTPSYLT 736

Query: 403  -----------IQWNRENSLAMTFIPFEKANQ--------FPENMPQNGIEPEDVDTRIN 443
                       I+ +      +       A                   +  E  D R  
Sbjct: 737  PLGIVAMLDAPIRRHGRVVGVLCLEHIGPARVWTTEEQTFAASLAAMATLTLEASDRRQA 796

Query: 444  KRKMEIEVMQ-----------LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
            +  +E  V +           L +I+E +   +  +++ G++ + N A + LFG+  +++
Sbjct: 797  QEALEHHVRERTGELRRTTAHLQTIIEESPLAMIELDQAGLVTTWNAAATALFGWTKDEV 856

Query: 493  LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
            L K    ++      V     T ++S    +           +  L+ + +    L   +
Sbjct: 857  LGKEL-PYVPPGQEEVSEELWTAVMSGAAPR--NLELRRQKNDGTLVDVNMWGSLLQGPA 913

Query: 553  CY----SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                       DI++ KQ +++L  A K+              V+H+    LT I G + 
Sbjct: 914  GQAVGSIGFFVDITKHKQLEDQLRQAHKMEG-----IGRLAGGVAHDFNNLLTVINGCAT 968

Query: 609  VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
            ++ +Q                I  +G     +   LL  S+    +  L F+   L+EA+
Sbjct: 969  LVLDQVR---AEDPLRRSLTEILTAGQRAAALTRQLLAFSR----RQVLTFQVFDLNEAL 1021

Query: 669  SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
            S   S+++     + I +  +  +    I AD   + Q+ LN+  NA    P+GG + ++
Sbjct: 1022 SSISSMIERLI-GEDISLVRNLDSRPCTIRADRGQIDQVVLNLAVNAKDAMPTGGTLTMA 1080

Query: 729  T--------------THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
            T                       L +RD+G GM    L    +PF          G+GT
Sbjct: 1081 TQVLLITPDSPVPHPALLPGAYAHLSIRDSGQGMDRTTLSHIFEPFFTTK----EEGKGT 1136

Query: 775  GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
            GLGL     +V  + G  +  S P +G+  ++ FPL +
Sbjct: 1137 GLGLATVYGIVKQSQGFIFADSRPGEGSTFDLYFPLVE 1174



 Score =  115 bits (289), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 42/381 (11%), Positives = 96/381 (25%), Gaps = 19/381 (4%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            +  D  G    I+  + + +G +  +M+G R  D     +  P          + T   
Sbjct: 256 IYRTDRSGRFTFINPAVIRLLGYHETEMLGHRALDFVHPDYRRPTERFYLRQFLRKTAST 315

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
                 +  T   + +      +  R+ E  GF+   +V    V        +   +++ 
Sbjct: 316 YCEFPLVTHTQQTLWVGQNVQLLQ-RDEEVIGFQ--AVVRDISVRKQTEEALRVSQERYR 372

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQ---SPPPHLRMKNKVSSLTEYYAHKDD--VLKTEKYP 260
            L E           +  + +     +          +        H DD   ++     
Sbjct: 373 ALFESSPEMLLTVDAQGTLLTVNTTTAAELGYEADELIGQPVARIVHPDDHGSMEKHFAD 432

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE---SFEYLSHRNHPSLSAYFDE 317
            L      L         + +    ++    ++N+  +        +      +     +
Sbjct: 433 SLRRPGEVLRWNFRKLRKDGSLLWVREAARAVRNSDGQFDIIIVCENVTEQKGIEDALTQ 492

Query: 318 GENLTPETVDKCPIPFFVYSHG--NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
              L    V+  P   F+           N +   L      + +               
Sbjct: 493 TRQLLESIVEHIPHMVFLKDAQELRFVQFNKAGEDLIGLPR-EALLGKNDFDFFPLEQAE 551

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
                 + V L       I A      IQ        +        +Q        GI  
Sbjct: 552 FFTARDREV-LTGGTMMDIPAE----PIQTKDHGLRWLHTKKLPLYDQAGMPRYLLGISE 606

Query: 436 EDVDTRINKRKMEIEVMQLCS 456
           +  D +  +    + + +L +
Sbjct: 607 DITDRKQREEAERLRLGKLET 627



 Score =  114 bits (285), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 48/450 (10%), Positives = 124/450 (27%), Gaps = 28/450 (6%)

Query: 148 TLWPIEGTN----LYVPIDLAALPIYSRNREFSGFR-GFG-IVHVNRVDND--PRALGKR 199
             WP+   +      +   + A   Y   R+F+  R G   I   +R        A    
Sbjct: 59  VNWPVVPHDRLLAWLLYHLVLAAGRYGLARKFTATRPGPANIERWDRAFLAGTTLAGLGW 118

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
                  L E    H           +  +        +   S +        +      
Sbjct: 119 GASALLLLPESSPAHQVFLAFVLAGITAGAASTLAARFDAFLSFSLPILTPLILRLFALD 178

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
                  +          +     T      TL+     +                +   
Sbjct: 179 HEQALPMAICTLLFSLLMVYTAYRTSNTVLETLRLKYHNAQLVDQLTGQLQEGEQMELLL 238

Query: 320 ----NLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
                     ++      +     G   + NP+ + L  Y   + +     L  +    +
Sbjct: 239 TVKTEHHRFIMEYAQDIIYRTDRSGRFTFINPAVIRLLGYHETEMLGHR-ALDFVHPDYR 297

Query: 375 LSDNNAIKPVMLYRSDRT--CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
                      L ++  T              W  +N   +         +  E +    
Sbjct: 298 RPTERFYLRQFLRKTASTYCEFPLVTHTQQTLWVGQNVQLLQ--------RDEEVIGFQA 349

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
           +  +    +  +  + +   +  ++ E++ + +  ++ +G +L+ N   +   GY  +++
Sbjct: 350 VVRDISVRKQTEEALRVSQERYRALFESSPEMLLTVDAQGTLLTVNTTTAAELGYEADEL 409

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
           + +P    +  +    M  +  + L     + L        K+  LL +R   + +  S 
Sbjct: 410 IGQPVARIVHPDDHGSMEKHFADSLR-RPGEVLRWNFRKLRKDGSLLWVREAARAVRNSD 468

Query: 553 C---YSLTMHDISEWKQEKNKLSHAKKIAE 579
                 +   +++E K  ++ L+  +++ E
Sbjct: 469 GQFDIIIVCENVTEQKGIEDALTQTRQLLE 498



 Score =  108 bits (269), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 45/364 (12%), Positives = 91/364 (25%), Gaps = 19/364 (5%)

Query: 237 KNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTIN--LNQYTKKQYFGTLQN 294
              +      + H D    TE++ L      +     +F  +          Q    LQ 
Sbjct: 281 TEMLGHRALDFVHPDYRRPTERFYLRQFLRKTASTYCEFPLVTHTQQTLWVGQNVQLLQR 340

Query: 295 NSKESF---EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLL 350
           + +                        +       +  P     V + G L   N +   
Sbjct: 341 DEEVIGFQAVVRDISVRKQTEEALRVSQERYRALFESSPEMLLTVDAQGTLLTVNTTTAA 400

Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
              Y++ + I         +  P    +         R     +        ++ +    
Sbjct: 401 ELGYEADELIGQPV---ARIVHPDDHGSMEKHFADSLRRPGEVL--RWNFRKLRKDGS-- 453

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470
           L                     +     + +  +  +      L SI+E     + + + 
Sbjct: 454 LLWVREAARAVRNSDGQFDIIIVCENVTEQKGIEDALTQTRQLLESIVEHIPHMVFLKDA 513

Query: 471 -EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
            E   +  N+A   L G P E +L K    F              E+L+      +    
Sbjct: 514 QELRFVQFNKAGEDLIGLPREALLGKNDFDFFPLEQAEFFTARDREVLTGGTMMDIPAEP 573

Query: 530 LGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
           +  TK+  L  L      L   +           DI++ KQ +          E + +  
Sbjct: 574 I-QTKDHGLRWLHTKKLPLYDQAGMPRYLLGISEDITDRKQREEAERLRLGKLETQQAVL 632

Query: 586 SDFL 589
            +  
Sbjct: 633 HELA 636



 Score = 45.8 bits (107), Expect = 0.031,   Method: Composition-based stats.
 Identities = 25/250 (10%), Positives = 58/250 (23%), Gaps = 11/250 (4%)

Query: 88   NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
             +D  G +   +       G    +++G  L  V      + +  +   +          
Sbjct: 831  ELDQAGLVTTWNAAATALFGWTKDEVLGKELPYV-PPGQEEVSEELWTAVMSGAAPRNLE 889

Query: 148  TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                     L V +++    +     +  G  GF +               R   K   +
Sbjct: 890  LRRQKNDGTL-VDVNMWGSLLQGPAGQAVGSIGFFV--DITKHKQLED-QLRQAHKMEGI 945

Query: 208  HEIKKGHSSVEKEKYDIFSQQSP--PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
              +  G +        + +  +      +R ++ +                    LL   
Sbjct: 946  GRLAGGVAHDFNNLLTVINGCATLVLDQVRAEDPLRRSLTEILTAGQRAAALTRQLLAFS 1005

Query: 266  ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
               +   + F  +N    +       L          L  R     +      + +    
Sbjct: 1006 RRQVLTFQVF-DLNEALSSISSMIERLIGEDISLVRNLDSRPCTIRADRGQIDQVVLNLA 1064

Query: 326  V---DKCPIP 332
            V   D  P  
Sbjct: 1065 VNAKDAMPTG 1074


>gi|70733602|ref|YP_257242.1| alginate biosynthesis sensor protein KinB [Pseudomonas fluorescens
           Pf-5]
 gi|68347901|gb|AAY95507.1| alginate biosynthesis sensor protein KinB [Pseudomonas fluorescens
           Pf-5]
          Length = 594

 Score =  295 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 90/428 (21%), Positives = 174/428 (40%), Gaps = 28/428 (6%)

Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK-- 444
             + R      A         E +  +T  P   A +      + GI  E +        
Sbjct: 191 AIARRFGGPIEALAKAADKIGEGNFDVTL-PISAAAEMNLLTRRFGIMAEALRQHQATNV 249

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            ++     +L ++L++  DG+ +I+R+G +   N    +  G+  E + +   +      
Sbjct: 250 DELLAGQQRLQAVLDSIDDGLLMIDRQGRLEHLNPVAQRQLGWDQERLGQGLGSALQRPE 309

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDIS 562
               +   L           L+        E +LL+  +              + +HD++
Sbjct: 310 LDEQLQLVLRGGNLERAPDDLDIEV---DGESRLLTYSLTPVSHTQGHILGAVMVLHDVT 366

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E +  +                +S+F+ R SHE+RTP+T  +  +  +  +R       R
Sbjct: 367 EQRAFE--------------RVRSEFVLRASHELRTPVTG-MHMAFGLLQERLHFPEESR 411

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             +  N ++     ++ ++NDLL+ S+ ++G   L   P  L+E + +A       A ++
Sbjct: 412 ETDLLNTVNEEMQRLMQLINDLLNFSRYQNGLQKLTLAPCPLEELLVQAQGRFSEQAQQQ 471

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
            I +       +PR+ AD   ++++  N++ NA+  T S GQI +       E VI+ V 
Sbjct: 472 GIDLLLEIQAPLPRLHADRAQLERVLDNLIDNALRHTASEGQIRLQ-ARRHGERVIVSVE 530

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G G+   +  +  +PF Q+      +  G GLGL L K +V  + G+  ++S P +GT
Sbjct: 531 DNGEGIAYGQQGRIFEPFVQV----GRKKGGAGLGLALCKEIVQLHGGRMGVYSRPGQGT 586

Query: 803 LIEIIFPL 810
              +  PL
Sbjct: 587 QFYLALPL 594



 Score = 43.1 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 26/241 (10%), Positives = 60/241 (24%), Gaps = 9/241 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G L+ ++    + +G    + +G  L        +D       L+ R         
Sbjct: 273 IDRQGRLEHLNPVAQRQLGWDQER-LGQGLGSALQRPELDEQ---LQLVLRGGNLERAPD 328

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
              IE       +  +  P+        G     ++H          +  R +      H
Sbjct: 329 DLDIEVDGESRLLTYSLTPVSHTQGHILGA--VMVLHDVTEQRAFERV--RSEFVLRASH 384

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           E+ +   +     + +  ++   P    +  + +       +   L  +       +   
Sbjct: 385 EL-RTPVTGMHMAFGLLQERLHFPEESRETDLLNTVNEEMQRLMQLINDLLNFSRYQNGL 443

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
                    +       +  F                   P L A   + E +    +D 
Sbjct: 444 QKLTLAPCPLEELLVQAQGRFSEQAQQQGIDLLLEIQAPLPRLHADRAQLERVLDNLIDN 503

Query: 329 C 329
            
Sbjct: 504 A 504


>gi|229161523|ref|ZP_04289503.1| hypothetical protein bcere0009_23090 [Bacillus cereus R309803]
 gi|228621768|gb|EEK78614.1| hypothetical protein bcere0009_23090 [Bacillus cereus R309803]
          Length = 590

 Score =  295 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 93/503 (18%), Positives = 182/503 (36%), Gaps = 33/503 (6%)

Query: 312 SAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
           +    + E      +   P+    +  +G     N    ++T Y + + I     L  L 
Sbjct: 100 ATLLSQKEEELHTILQNMPVMVDALDHNGEFILWNRECEIVTGYTAEEIIGNPNALQLLY 159

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
                      K +   ++ R        +     N E    M     E+          
Sbjct: 160 PDHNYRHQIQSKFLTRGKNFR-----DWEMRITCKNGEVKTIMWSNISEQFPVTG--FSY 212

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490
             +  +    +  +++++ +  +L  I +A  D   +   +G I+         F  P E
Sbjct: 213 WAVGVDITHLKAIEKQLKQQTSELELIFKALPDLCFLTEDDGTIIDYKAGSPTKFYVPAE 272

Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
             + K F   L           + ++        +E           +         L  
Sbjct: 273 AFMGKKFYEVLPSPVAQQFQEAIHQVKEKGTNTIVEYPLAI---NGSVNFFEARCLPLLQ 329

Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
                + + DI+E K+ +  L+ +  +A           A V+HE+R PLT I GF +  
Sbjct: 330 DK-IMIIVRDITERKKTEELLNKSDTLA-----AIGQLAAGVAHEVRNPLTVIKGFIQ-- 381

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
                  +      +Y + +      +  I+ + L I+K +     ++ E  +L +    
Sbjct: 382 ----LFQINKEDQEKYFDLMLSEIERIEAILQEFLSIAKTD----EINTEKKNLYQIFKN 433

Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
            +SL+   A    I +     +    I      +KQ+ +NIL N+I   P+GG+I I   
Sbjct: 434 VVSLINTKAIMTNIQVELYTDSKELIIECSENQLKQVFINILQNSIEAMPTGGKISIHIK 493

Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
             +NE VI+ V D G+G+    +++  +PF         + +GTG+GL L+  +++++ G
Sbjct: 494 KINNEGVIIHVIDEGIGIPEERIKRLGEPFY------STKEKGTGIGLMLSYKIIESHQG 547

Query: 791 KFYIFSTPAKGTLIEIIFPLYDT 813
              I S    GT + I  P + +
Sbjct: 548 NISIMSEVGVGTTVTIYLPKFQS 570


>gi|297568795|ref|YP_003690139.1| multi-sensor signal transduction histidine kinase [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296924710|gb|ADH85520.1| multi-sensor signal transduction histidine kinase [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 624

 Score =  295 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 76/389 (19%), Positives = 164/389 (42%), Gaps = 17/389 (4%)

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
              Q  +E +D         +  ++ +  +I+   ++G   ++ EG  +  N A+  + G
Sbjct: 244 RTRQELVEEQDNIIAQRTANLSRQMQRYHTIINTAAEGYWELDAEGRTVMVNEALQNMLG 303

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
           Y  +D+L +    F       +         +   R         + K+   +  R    
Sbjct: 304 YSHQDMLGRYPHEFARGKNVEIFREQFNRREATTNRA---YHVTLNAKDGHEVHARFHAT 360

Query: 547 KLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
            L             + DI+E  + +   +      E+ +    DF    SH+++ PL  
Sbjct: 361 SLLDEHNRLIGSFAFITDITELLEIRQSAAAYALKLERSNKELQDFAHIASHDLQEPLRT 420

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           I+ F + +  +    L + R  +Y   I  +   +  ++ DLL+ S++ + +  +   PV
Sbjct: 421 IVSFGDRLLLKHADQL-DQRGRDYLERIQGAAIRMRQLIEDLLNYSRVTTREQTM--IPV 477

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
            L+E ++E +S +     E    +      ++P I AD   + ++ LN++ NA+ F    
Sbjct: 478 DLNEVLTEVLSDLGQRIREHDGRVEV---ADLPTIKADRGQIHRLFLNLIGNALKFQAQD 534

Query: 723 G--QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
               + +S   +  +++ + V D G+G     L++  +PF ++    + + +GTG+GL +
Sbjct: 535 SLPVVKVSVGKSDAQQLEIMVSDNGIGFDVKYLDRIFRPFQRLH--VRGQYQGTGMGLAI 592

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            K +V+++ G+    S P +GT   I+ P
Sbjct: 593 CKKIVESHQGELTASSKPGEGTTFHIVLP 621



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/250 (10%), Positives = 64/250 (25%), Gaps = 16/250 (6%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK 146
           W +DA G    ++E L   +G     M+G    + +   +++      +  +        
Sbjct: 283 WELDAEGRTVMVNEALQNMLGYSHQDMLGRYPHEFARGKNVEIFREQFNRREATTNRAYH 342

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR----LDK 202
            TL   +G  ++      A  +   +    G   F  +       + R         L++
Sbjct: 343 VTLNAKDGHEVHAR--FHATSLLDEHNRLIG--SFAFITDITELLEIRQSAAAYALKLER 398

Query: 203 KFSHLHEIKKGHSSVEKEKYDI---FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
               L +     S   +E       F  +    H    ++             +   +  
Sbjct: 399 SNKELQDFAHIASHDLQEPLRTIVSFGDRLLLKHADQLDQRGRDYLERIQGAAIRMRQLI 458

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
             L +       ++    ++L      +    + ++  +       R   +         
Sbjct: 459 EDLLNYSRVTTREQTMIPVDL-----NEVLTEVLSDLGQRIREHDGRVEVADLPTIKADR 513

Query: 320 NLTPETVDKC 329
                     
Sbjct: 514 GQIHRLFLNL 523


>gi|195978500|ref|YP_002123744.1| TCS sensor kinase VicK [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|195975205|gb|ACG62731.1| TCS sensor kinase VicK [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
          Length = 450

 Score =  295 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 90/406 (22%), Positives = 170/406 (41%), Gaps = 36/406 (8%)

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDT-RINKRKMEIEVMQLCSILEATSDGIAIINREG 472
            +          E M  +    +  D  R+    +  E  +L SIL   +DG+   NR G
Sbjct: 55  RYTDTINEKADIELMELSEQLNDLSDVFRLTHENLAQEKNRLASILAYMTDGVLATNRSG 114

Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
            I+  N    K      E  L K  T  L+ ++P      +++        TL +     
Sbjct: 115 KIIMINETAQKQLNLNREQALEKNITDLLDSDSPYTYRELVSKT----PIVTLNR----R 166

Query: 533 TKEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
               + +SLR+        S +     + +HD +E ++E+ +                 F
Sbjct: 167 NDTGEFVSLRLRFALNRRESGFISGLVVVLHDTTEQEKEERERRL--------------F 212

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
           ++ VSHE+RTPLT++  + E +     G L       +        N ++ +++DLL++S
Sbjct: 213 VSNVSHELRTPLTSVKSYLEAL---DEGALKEDIAPSFIKVSLDETNRMMRMISDLLNLS 269

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLV-----QLYANEKRILIRTSFANNIPRILADLRS 703
           +I++    L  E  +    ++  ++       Q  +  K   I   +      +  D   
Sbjct: 270 RIDNHVTQLSVEMTNFTAFMTSILNRFDLVKNQHTSTGKSYEIVRDYPITSIWLEIDDDK 329

Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
           + Q+  NIL+NAI ++P GG+I+++   T   ++I+ + D G+G+   +L      F ++
Sbjct: 330 MTQVIENILNNAIKYSPDGGKIVVNMKTTDT-QLIISISDEGLGIPKKDLPLIFDRFYRV 388

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             ++     GTGLGL +AK ++  + G  +  S   KG+   I+ P
Sbjct: 389 DKARSRAQGGTGLGLAIAKEIIKQHRGFIWAKSDYGKGSTFTIVLP 434


>gi|146300947|ref|YP_001195538.1| PAS/PAC sensor signal transduction histidine kinase [Flavobacterium
           johnsoniae UW101]
 gi|146155365|gb|ABQ06219.1| PAS/PAC sensor signal transduction histidine kinase [Flavobacterium
           johnsoniae UW101]
          Length = 896

 Score =  295 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 95/764 (12%), Positives = 227/764 (29%), Gaps = 54/764 (7%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH--IDPNNHIGDLLKRQNT 142
             +  D        ++ L    G  A   IG  L D        +     I D++  +  
Sbjct: 152 LVYVFDLAYNFTYANKALLDMWGKSAQDAIGKGLRDNGYEEWHAVMHEREIDDVVANKKM 211

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG----- 197
             G T  +P       V   + A P++++  E     G                      
Sbjct: 212 IRG-TVSFPHAELGRRVYDYIFA-PVFNKQGEVEAIAG--TTRDITEIKLAEEQQFLARK 267

Query: 198 --KRLDKKFSHLHEIKKGHSSVEKEKYDIFS--QQSPPPHLRMKNKVSSLTEYYAHKDDV 253
             +  + +   +       + V      +     +     +    ++  +       +  
Sbjct: 268 RIEESESRLQSMIHQTPSATLVLMGADLVIEQINRQMLALIGRGEEIIGMRLIDVLPELN 327

Query: 254 LKTEKYPL---------LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
            +     +             E  +         +       +        +        
Sbjct: 328 GQYVWTQVQNVYNKGIPFDQAEVLVQHNRTGEMRDYYYNLAYRPLVQDGVITGMIQVAED 387

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364
                +     +E E      V+      FVY        N  + ++   +++D     G
Sbjct: 388 VTEQVTARNKMEESEKRFRALVNASSD--FVYR------MNADWTVMRSLETLDSYASEG 439

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
              +      +  ++  K + L        +     H +                  +  
Sbjct: 440 EPVSNWINSYIHPDDRKKALKLISEAIDNKSIFQLEHRVLNANGTIGWNFSRVVPILDDN 499

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
              +   G   +    +  ++ +         + +     I     +G I   N+   + 
Sbjct: 500 NTIIEWFGAASDITSQKEVQQIINESAENFRQLADLVPQIIWTSRPDGFIDYYNKRWYEY 559

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
                 +     +   L  +   ++     E +       LE     S    +       
Sbjct: 560 TNLKENEYGDSSWISVLHPDDVELVKDNWYESIQSGNFYQLEFRLKDSV-TGEYRWFLSK 618

Query: 545 IKKLPFSSC----YSLTMHDISEWK----QEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
              +  +S     +  T  DI E K    + +  ++   +  ++ +     F    SH++
Sbjct: 619 AVPIRDASGAITKWFGTCTDIHEQKTATEKLEVLINERTRELQRSNEDLQQFAHVASHDL 678

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           + P+  I  F   +++   G L +    ++ + I  + + + +++  +L  SKI + +  
Sbjct: 679 KEPVRKIKTFISRLEDNLEGKLDDS-AKKFIDRIHVASDRMFNMIEGVLAYSKINADQQK 737

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716
                V L+E +    + +++   +    I      N+P +      + Q+  N+++N+I
Sbjct: 738 --PTVVDLNEVLKNIETDLEVSLQKTGGEIYYD---NLPVLEGAQVLLYQLFYNLINNSI 792

Query: 717 HFTPSGGQIIISTT-----HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
            F      + +  +        N+  ++ V D G+G    + E+  + F ++ +      
Sbjct: 793 KFAKDDVPVKVKLSSKIIKQQDNDFAVITVEDNGIGFNENQAERIFETFTRLNSKDS--Y 850

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
           EGTGLGL L K +V+ + G      +P  G +  I+ PL    +
Sbjct: 851 EGTGLGLSLCKKIVERHAGTITASGSPYNGAVFTIVLPLKQEEN 894



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/237 (13%), Positives = 79/237 (33%), Gaps = 32/237 (13%)

Query: 423 QFPENMPQNGIEPEDVDTRINKRKM-------EIEVMQLCSILEATSDGIAIINREGIIL 475
              +N           + +  +  +       E +     SI   T D + + +      
Sbjct: 104 AEEKNGLLIVTVENITEYKTKRNNLIAALTAIEKQERFYNSITNTTPDLVYVFDLAYNFT 163

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH-YLTEILS-----LDLRQTLEKIT 529
             N+A+  ++G   +D + K       +   +VM+   + ++++                
Sbjct: 164 YANKALLDMWGKSAQDAIGKGLRDNGYEEWHAVMHEREIDDVVANKKMIRGTVSFPHAEL 223

Query: 530 LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
                +     +     ++   +    T  DI+E K  + +   A+K  E+  S     L
Sbjct: 224 GRRVYDYIFAPVFNKQGEVEAIAG---TTRDITEIKLAEEQQFLARKRIEESESR----L 276

Query: 590 ARVSHEIRTP-LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV-LDIVNDL 644
             + H  +TP  T ++  ++++  Q           +    I R   ++ + +++ L
Sbjct: 277 QSMIH--QTPSATLVLMGADLVIEQIN--------RQMLALIGRGEEIIGMRLIDVL 323


>gi|60682125|ref|YP_212269.1| putative two-component system sensor kinase/response regulator
           fusion protein [Bacteroides fragilis NCTC 9343]
 gi|60493559|emb|CAH08347.1| putative two-component system sensor kinase/response regulator
           fusion protein [Bacteroides fragilis NCTC 9343]
          Length = 1022

 Score =  295 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 125/741 (16%), Positives = 242/741 (32%), Gaps = 49/741 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGN-YAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQNTW 143
            W  D    L     E     G      +                   I  D+L   +  
Sbjct: 156 LWEFDVRTRLFYA--ENEPLNGYDPTQALTIEDYKKQIHPEDWKKAEIILLDMLSGCDCL 213

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPI-YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
           Y       +  T+ +    L   P     + +   + GF      R +N      K L +
Sbjct: 214 YEIDFRIRLSDTSEWQYCKLNCTPYERGTDGKVIKYVGF------RKNNTELQRRKLLQE 267

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
              +   +      VE +   +F  +            +  +   + + + ++     + 
Sbjct: 268 NILNSIPLPIHIKDVEDDFRYVFCNEESMRMFGTHEGETVCSVLDSEQAERMQKTDLEVF 327

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
           T+ +     +     I  +  +                  L+ R    L   F     + 
Sbjct: 328 TTGKPYFGVE---RIILKDGRSYDTIVRKNIIYDGTKRLLLNIRWDQKLQNDFKRRAKVL 384

Query: 323 PETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
             +++      + Y       +           ++D              P         
Sbjct: 385 SMSMEVMNAYTWFYEPSKQRVSFGEGFDKIGRNALDINSFEKFAEC--VHPDDRQRFVDT 442

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
              + + D        R    +           +              +G+       + 
Sbjct: 443 MDAVLKQDSGEWDIEYRADLRRNGNYEWWKTRGVLETSILNDHPYQYVSGMSISIESYKQ 502

Query: 443 NKRKMEIEVMQL-------CSILEATSDGIAIINREGIILSTN----RAVSKLFGYPVED 491
            +  +     +L         +L  T+ G+A I  + ++   N     +      Y   +
Sbjct: 503 TELTLLKNKEKLNKLIRQNELVLNNTNSGLAYITTDYVVQWENVSVCSSSLSFEAYKRGE 562

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
              K            V++  L       ++  LE          +++ +          
Sbjct: 563 CCYKSAHNRTSPCDNCVLSKVLVSRQMEKIKFHLE--------NNRIVEVLATPVFNESE 614

Query: 552 --SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                 + + DI++ ++   +L  AK +AE+    KS FLA +SHEIRTPL AI+GFS++
Sbjct: 615 EIDGIVIRVDDITDRERMIEELRQAKLLAEQSDKLKSAFLANMSHEIRTPLNAIVGFSDL 674

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           + N            EY   I+ +  L+L ++ND+LD+SK+ESG + L +E   L E   
Sbjct: 675 LMNSEEQGDKE----EYMQIINTNNELLLKLINDILDLSKLESGSVELKYEEFDLAEYFD 730

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
              S ++      ++ +      ++ R+  D   V Q+  N ++NAI +TP G    I  
Sbjct: 731 SMASSMKQRVTNPKVQLVAVNPYSVCRVRLDKNRVAQVVTNYVTNAIKYTPQG---TIEM 787

Query: 730 THT-SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
            +   +  + L VRDTG+G+   +  K    F ++        +GTGLGL + KA+ ++ 
Sbjct: 788 GYEVVDAGIRLYVRDTGIGIPEEKKRKVFHRFEKLD----EFAQGTGLGLSICKAITESM 843

Query: 789 MGKFYIFSTPAKGTLIEIIFP 809
            G     S  ++G+L   + P
Sbjct: 844 GGSVGFESEYSRGSLFWAVLP 864



 Score = 44.6 bits (104), Expect = 0.061,   Method: Composition-based stats.
 Identities = 19/143 (13%), Positives = 46/143 (32%), Gaps = 10/143 (6%)

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRKPFTVFLEQNTPSVMNHYL 513
            +I E    G+ + + +G ++  N    K+ G    +D+L          N P  M   L
Sbjct: 16  QTIYENLPVGMELYDGDGYLIEINSVGLKMMGVKDKQDMLGINIFE--NPNIPVEMKRRL 73

Query: 514 TEILSLDLRQTLEKIT-------LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQ 566
               ++      +          + S      +++ +++ +      +     D++E   
Sbjct: 74  RAGENIRFTVKYDFDLAKAHYPTVLSGISYFEITVSVVLDENKEIDKFLFIAQDVTEAVH 133

Query: 567 EKNKLSHAKKIAEKESSHKSDFL 589
            +  L  +K+            L
Sbjct: 134 TQEILRQSKQKTALAMQAAEVML 156


>gi|209526093|ref|ZP_03274625.1| histidine kinase [Arthrospira maxima CS-328]
 gi|209493481|gb|EDZ93804.1| histidine kinase [Arthrospira maxima CS-328]
          Length = 1064

 Score =  295 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 75/266 (28%), Positives = 134/266 (50%), Gaps = 12/266 (4%)

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
           + +   DI+E  +   +L+       + +  K +FLA +SHE++TPLTA++G S ++K++
Sbjct: 321 WLIIAQDITEQYRVAQELTAKNADLIQLNRLKDEFLACISHELKTPLTAVLGLSSLLKDK 380

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
             G L + R  +YA  I +SG  ++ +VND+LD+++IE+G++ L  E V++      A+ 
Sbjct: 381 ALGELSD-RQAKYAKLIHQSGRHLMMVVNDILDLTRIETGQLELTPEGVNIQTVCDRALE 439

Query: 674 LVQLYANEKRIL----------IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
            V     +  I                   +  I AD   ++Q+ +N++SNA  FTP GG
Sbjct: 440 AVLHLHQQGDIKDSQSSLGSQKFSIEIEPGLETIEADELRLRQMLINLISNAFKFTPDGG 499

Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
            + +      +  ++  V DTG+G+   +     + F Q+ +    + EGTGLGL L + 
Sbjct: 500 YMGLRVNRWED-WIVFTVWDTGIGIPEQKQHLIFEKFQQLESPLNRQFEGTGLGLVLCQR 558

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFP 809
           +   + G     S   KGT   ++ P
Sbjct: 559 LARLHGGDISFISHQGKGTEFTLLLP 584


>gi|197121601|ref|YP_002133552.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter
           sp. K]
 gi|196171450|gb|ACG72423.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter
           sp. K]
          Length = 746

 Score =  295 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 110/700 (15%), Positives = 233/700 (33%), Gaps = 53/700 (7%)

Query: 128 DPNNHI-GDLLKRQNTWYGKTTLWP-IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVH 185
           D    + G LL   +       + P  EG      +D A        R  +      +  
Sbjct: 66  DGAGRLSGALLAAVDPERLAARVLPAREGEGSVGIVDRAG-------RLVARVPAIPLAW 118

Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE 245
            +R+    + L +           ++       +    +   +        + + + L  
Sbjct: 119 DDRLVAGAQDLVRAALAGAEATGPMRSEGGGPARLAAAVPVPELAWAVRATQPRAAMLAP 178

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
                   L       L +  +S       HT    +  ++      +  + E       
Sbjct: 179 MRRELAIGLLGAGLVALVALGASWAVG--AHTSRALRRLERHAAALGRGEAPEPLTGPDE 236

Query: 306 RNHPSLSAY-----FDEGENLTPETVDKCPIPFFVYSHG--NLFYANPSFLLLTKYKSVD 358
                 +        D           + P+   +         +ANP++L       +D
Sbjct: 237 VVRLGAAYAQMARHLDAVRRRFEAAFAEAPVGVLILDPAELRARWANPAYLAF-----LD 291

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR-ENSLAMTFIP 417
               + G+  L     L        V L R +      +      +++            
Sbjct: 292 APFRSEGVQGLRLEEFLPRAQEAGLVALLR-EVAAGDVAHEEQEYRYDGFARGPTWWRWS 350

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
                          +  E  +    + ++E +  +L ++L     G+ I +  G ++  
Sbjct: 351 VRAVESGGGRRDLVVMVSEVTEQVRGREQVEADRRRLEAVLRVLPVGVLIADAGGQVVQA 410

Query: 478 NRAVSKLFG-----YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
           N A  +++G      P      +           +  +  L   L        E + +  
Sbjct: 411 NDAARRIWGSRAPLRPGALYREQRARRADSGAPLAAGDWALQRALRSGEAVGGELVEIDR 470

Query: 533 TKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
             +     +      +       +    T+ D++E ++                 ++ + 
Sbjct: 471 -FDGTQAVVLNGAAPIRDGEGRVVGAVTTLLDVTELRR--------------AVRNRDEV 515

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
           L  VSH++RTPL+A+   +  +     GP    +    A  +  +G  +  +++DLLD+ 
Sbjct: 516 LQVVSHDLRTPLSAVTLGAAALTRLPDGPEAAAQARRAAARLAAAGRRMNRLIDDLLDLE 575

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIA 708
            +E G++++  EP    + + EA   ++  A  K + +  S A  +P +  D   V Q+ 
Sbjct: 576 TLEEGRLSMRPEPCDPADLLGEAADQLREAARAKGLDLCLSAAPGLPPVACDRDRVLQVL 635

Query: 709 LNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
            N+ SNA+  T  G  + ++    ++  VI RVRDTG G+ + +L      F +   ++ 
Sbjct: 636 GNVASNAVKATEEGA-VCLAAEAQADGAVIFRVRDTGPGIADADLPHVFDRFQRGSAARW 694

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
               G+GLGL +A+ +V+A+ G+ +  S P  GT +    
Sbjct: 695 R---GSGLGLAIARGLVEAHGGRIWAESAPGAGTTVSFTL 731



 Score = 45.0 bits (105), Expect = 0.047,   Method: Composition-based stats.
 Identities = 37/329 (11%), Positives = 86/329 (26%), Gaps = 19/329 (5%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN------HIGDLLKRQNTW 143
           DA G + + ++   +  G+ A    G    +                  +   L+     
Sbjct: 402 DAGGQVVQANDAARRIWGSRAPLRPGALYREQRARRADSGAPLAAGDWALQRALRSGEAV 461

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
            G+            V +   A PI        G     +  +  V    RA+  R +  
Sbjct: 462 GGELVEIDRFDGTQAV-VLNGAAPIRDGEGRVVGA----VTTLLDVTELRRAVRNRDEVL 516

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
               H+++   S+V      +      P       + ++       + + L  +   L T
Sbjct: 517 QVVSHDLRTPLSAVTLGAAALTRLPDGPEAAAQARRAAARLAAAGRRMNRLIDDLLDLET 576

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
            EE  L  + +            +    L+  ++     L     P L     + + +  
Sbjct: 577 LEEGRLSMRPEPC---DPADLLGEAADQLREAARAKGLDLCLSAAPGLPPVACDRDRVLQ 633

Query: 324 ETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
              +           G +  A  +     +        +      + DA      +  + 
Sbjct: 634 VLGNVASNAVKATEEGAVCLAAEA-----QADGAVIFRVRDTGPGIADADLPHVFDRFQR 688

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLA 412
               R   + +  +     ++ +     A
Sbjct: 689 GSAARWRGSGLGLAIARGLVEAHGGRIWA 717


>gi|317498208|ref|ZP_07956509.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316894563|gb|EFV16744.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 939

 Score =  295 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 88/446 (19%), Positives = 178/446 (39%), Gaps = 38/446 (8%)

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK---MEIEVMQLCSIL 458
            I  + E              +  ++        +  + ++   +   M  +   +  ++
Sbjct: 232 RITLDGEERW---VRNVVIRGEIEDSEYAMIFLRDITEAKVESARHLQMAADNASMEQLI 288

Query: 459 EATS---DGIAIIN-REGIILSTNRAVSKL---FGYPVEDILR-----KPFTVFLEQNTP 506
           ++     D   + +         N     +    G+  +  ++     K        +  
Sbjct: 289 QSIVRLVDRFVVCDLENDRYEFYNLNGQMIYKPLGFYHDFQMQVLKKYKTLEPLEAIDIL 348

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGST--KEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564
              ++   ++ + +     E  +L     K    + L     KL       L   D+++ 
Sbjct: 349 IAPDNIRKKLKNENDIYKFEYCSLDEKTYKIASYIPLEWKNGKLEK---VLLASMDVTQE 405

Query: 565 KQEKNKLSHAKKIAEK----ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           K+ + +   A K A +     +  K++FL+ +SH+IRTP+ AI+G + +           
Sbjct: 406 KKAEIESRQALKEAYRSAENANRAKTEFLSNMSHDIRTPMNAIVGLTAIAGANI---ESQ 462

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
            R IE  + I  S   +L ++N++LD+++IESGKM L  E  +L + V   I++ +   +
Sbjct: 463 DRVIECLSKITESSRHLLGLINEVLDMARIESGKMTLAQEDFNLSDLVDNLITITKPVLD 522

Query: 681 EKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE--- 736
           E +        +     +  D   ++Q+ +N++SNAI +TP GG I  S     N     
Sbjct: 523 EHKHNFDIHINHIEHEAVCGDSLRIQQVFVNLMSNAIKYTPDGGNITFSIEEKPNGFSEL 582

Query: 737 --VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
                 + D G+GM+    +    PF +  + +  R +GTGLG+ +++ +V+   G   +
Sbjct: 583 GCYEFTIEDNGIGMSPEFQKIMFDPFSRADDHRTTRVQGTGLGMAISRNIVNLMNGTIKV 642

Query: 795 FSTPAKGT--LIEIIFPLYDTSHPHD 818
            ST  KGT   + I   L +     D
Sbjct: 643 DSTLHKGTKITVTIYLELQEKEKEQD 668


>gi|225026156|ref|ZP_03715348.1| hypothetical protein EUBHAL_00397 [Eubacterium hallii DSM 3353]
 gi|224956516|gb|EEG37725.1| hypothetical protein EUBHAL_00397 [Eubacterium hallii DSM 3353]
          Length = 958

 Score =  295 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 97/469 (20%), Positives = 184/469 (39%), Gaps = 41/469 (8%)

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
           +        +   T +A   R   I  N E              +  ++        +  
Sbjct: 231 DRGYIAERLKGLETELALECR---ITLNGEERW---VRNVVIRGEIEDSEYAMIFLRDIT 284

Query: 439 DTRINKRK---MEIEVMQLCSILEATS---DGIAIIN-REGIILSTNRAVSKL---FGYP 488
           +T++   +   M  +   +  ++++     D   + +         N     +    G+ 
Sbjct: 285 ETKVESARHLQMAADNAYMEQLIQSIVRLVDRFVVCDLENDRYEFYNLNGQMIYKPLGFY 344

Query: 489 VEDILR-----KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST--KEEKLLSL 541
            +  ++     K        +     ++   ++ S +     E  +L     K    + L
Sbjct: 345 HDFQMQVLEKYKTLEPLEAIDILIAPDNIRKKLKSENDIYKFEYCSLDEKTYKIASYIPL 404

Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK----ESSHKSDFLARVSHEIR 597
                KL       L   D+++ K+ + +   A K A +     +  K++FL+ +SH+IR
Sbjct: 405 EWKNGKLEK---VLLASMDVTQEKKAEIESRQALKEAYRSAENANRAKTEFLSNMSHDIR 461

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TP+ AI+G + +            R IE    I  S   +L ++N++LD++ IESGKM L
Sbjct: 462 TPMNAIVGLTAIA---GANVESQDRVIECLGKITESSRHLLGLINEVLDMACIESGKMTL 518

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAI 716
             E  +L E V   I+L +   +E +        +     +  D   ++Q+ +N++SNAI
Sbjct: 519 AQEDFNLSELVDNLITLTKPVLDEHKHNFDIHINHIEHEDVCGDSLRIQQVFVNLMSNAI 578

Query: 717 HFTPSGGQIIISTTHTSNEE-----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
            +TP GG II S     N           + D G+GM+    +    PF +  + +  R 
Sbjct: 579 KYTPDGGNIIFSIEEKPNGFSELGCYEFTIEDNGIGMSPEFQKIMFDPFSRADDHRTTRV 638

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGT--LIEIIFPLYDTSHPHD 818
           +GTGLG+ +++ +V+   G   + ST  KGT   + I   L +     D
Sbjct: 639 QGTGLGMAISRNIVNLMNGTIKVDSTLHKGTKITVTIYLELQEKEKEQD 687


>gi|150015251|ref|YP_001307505.1| multi-sensor signal transduction histidine kinase [Clostridium
           beijerinckii NCIMB 8052]
 gi|149901716|gb|ABR32549.1| multi-sensor signal transduction histidine kinase [Clostridium
           beijerinckii NCIMB 8052]
          Length = 682

 Score =  295 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 81/369 (21%), Positives = 162/369 (43%), Gaps = 13/369 (3%)

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV-EDILRKPFTVFLEQNTPSVM 509
              L  I+  + + I +I      +  N  +++L G    E+I+       +       +
Sbjct: 288 EECLNMIINNSDNAIFVI-SNNKFIFANEKMAELLGAEKVEEIIGIDIEKIITDEAKGAV 346

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCYSLTMHDISEWKQE 567
              +   +   L       +     + K++ + +              + + DI+  KQ 
Sbjct: 347 YRRIDNAICNKLSTPF-VESKLLRLDGKIVDIEVTNSFCMYKGQPSAMVMLRDITSRKQI 405

Query: 568 K------NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           +       +       A + +   ++F + +SHE++TPL  ++G  +++           
Sbjct: 406 QLLESNIEENKKLISKATELNKMMTEFFSNISHELKTPLNVLLGAVQILSLSGNDKNKLE 465

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
               Y   + ++   ++ +VN+L+DISK +SG   ++ +  ++   + +    V  YAN 
Sbjct: 466 SGK-YLKTMKQNCYRLVRLVNNLIDISKFDSGYFKMNLQNYNVVSVIEDITLSVADYANN 524

Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
           K I +          +  DL  +++I LN+LSNAI FT  GGQI+++  +   + +++ V
Sbjct: 525 KGIDLIFDTDVEEKDMAIDLDKIERIMLNLLSNAIKFTDKGGQILVNM-YDKKDNIVISV 583

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
           +D GVGM   +L    + FGQI  +     +G+G+GL L K++VD + G    FS   KG
Sbjct: 584 KDNGVGMPKDKLNMIFERFGQIDKTLARNSQGSGIGLSLVKSIVDMHNGDIKAFSEFGKG 643

Query: 802 TLIEIIFPL 810
           +   +  P+
Sbjct: 644 SEFVVKLPV 652


>gi|91209467|ref|YP_539453.1| phosphate regulon sensor protein [Escherichia coli UTI89]
 gi|91071041|gb|ABE05922.1| phosphate regulon sensor protein PhoR [Escherichia coli UTI89]
          Length = 431

 Score =  295 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 73/427 (17%), Positives = 151/427 (35%), Gaps = 37/427 (8%)

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             +L       I     L  + W     L +         +        G+    +  + 
Sbjct: 33  WFLLASVTGLLIWHFWNLLRLSW----WLWVDRSMTPPPGRGSWEPLLYGLHQMQLRNKK 88

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            +R++   + +  S  E+  D + +   EG I   N    ++ G    +   +     L 
Sbjct: 89  RRRELGNLIKRFRSGAESLLDAVVLTTEEGGIFWCNGLAQQILGLRWPEDNGQNILNLLR 148

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
               +               +   +         + L +R++           +   D++
Sbjct: 149 YPEFTQYL----------KTRDFSRPLNLVLNTGRHLEIRVMPYTHKQ---LLMVARDVT 195

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  Q +                + +F A VSHE+RTPLT + G+ E++  Q        +
Sbjct: 196 QMHQLEG--------------ARRNFFANVSHELRTPLTVLQGYLEMMDEQPLEGAVREK 241

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                + +      +  +V  LL +SKIE+   +L  E V +   +       Q  + +K
Sbjct: 242 A---LHTMREQTQRMEGLVKQLLTLSKIEAAPTHLLNEKVDVPMMLRVVEREAQTLSQKK 298

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           +        N + ++  +   ++    N++ NA++ TP G  I +      +      V 
Sbjct: 299 Q-TFTFEIDNGL-KVSGNEDQLRSAISNLVYNAVNHTPEGTHITVRWQRVPHG-AEFSVE 355

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G G+    + +  + F ++  ++  +  G+GLGL + K  V+ +  +  I ST  KGT
Sbjct: 356 DNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHAVNHHESRLNIESTVGKGT 415

Query: 803 LIEIIFP 809
               + P
Sbjct: 416 RFSFVIP 422


>gi|71907731|ref|YP_285318.1| PAS [Dechloromonas aromatica RCB]
 gi|71847352|gb|AAZ46848.1| PAS protein [Dechloromonas aromatica RCB]
          Length = 680

 Score =  295 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 88/393 (22%), Positives = 149/393 (37%), Gaps = 38/393 (9%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP---FTVFL 501
            + ++   +L     +++D     + +      +  +    G P++ ++ K        L
Sbjct: 4   AENDLSNERLHDFSRSSADWFWETDTDHRFTYLSDDIESKVGVPIDYLMGKSRRELATQL 63

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLT 557
             N P     YL  +         +                I              Y   
Sbjct: 64  TNNPPGDWEKYLAAL--NAREAFRDFEYCALAPNGVAYWFSISGVPFFDEQGEFRGYRGV 121

Query: 558 MHDISE-------------------WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
             D++E                    ++ +  L   ++ A   S  KS FLA +SHEIRT
Sbjct: 122 GRDVTETHSMQVELHRYRSHLEDEVRRRTEESLKE-RERAISASQAKSIFLANMSHEIRT 180

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
           P+ AI+G + +++ +    +  P  +E    +  S + +L ++ND+LDISKIESG   L 
Sbjct: 181 PMNAIVGLTHLLRKE----ITTPAQLEKLAQVSASADHLLSVINDILDISKIESGNAALD 236

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718
                L+  +    S++ L A  K + +          +  D   + Q+ +N L NA+ F
Sbjct: 237 ELDFELEGMIRRVSSVIALRAQAKGLELIVDIRTLPTVLHGDPTRLSQVLINFLGNAVKF 296

Query: 719 TPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           T  G  I +     +       V   V DTG+G++    EK  + F Q   S      GT
Sbjct: 297 TVQGS-ITLRGRIEAETATDMVVRFEVEDTGIGISPDAQEKIFEAFEQADQSTTRNYGGT 355

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           GLGL +AK       G   + STP  G++  I 
Sbjct: 356 GLGLAIAKHAAKMMKGDVGVRSTPGVGSVFWIT 388



 Score = 70.4 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/266 (14%), Positives = 68/266 (25%), Gaps = 13/266 (4%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN---HIGDLLKRQNTW 143
           W  D       +S+++   +G     ++G    +++  L  +P          L  +  +
Sbjct: 25  WETDTDHRFTYLSDDIESKVGVPIDYLMGKSRRELATQLTNNPPGDWEKYLAALNAREAF 84

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                         Y    ++ +P +    EF G+RG G        +  +    R    
Sbjct: 85  RDFEYCALAPNGVAY-WFSISGVPFFDEQGEFRGYRGVG--RDVTETHSMQVELHRYRSH 141

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA---HKDDVLKTEKYP 260
                  +   S  E+E+    SQ        M +++ +         H      T    
Sbjct: 142 LEDEVRRRTEESLKERERAISASQAKSIFLANMSHEIRTPMNAIVGLTHLLRKEITTPAQ 201

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
           L    + S         IN      K   G    +  + FE        S          
Sbjct: 202 LEKLAQVSASADHLLSVINDILDISKIESGNAALDELD-FELEGMIRRVSSVIALRAQAK 260

Query: 321 LTPETVD--KCPIPFFVYSHGNLFYA 344
                VD    P          L   
Sbjct: 261 GLELIVDIRTLPT-VLHGDPTRLSQV 285


>gi|227114441|ref|ZP_03828097.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Pectobacterium carotovorum subsp. brasiliensis
           PBR1692]
          Length = 928

 Score =  295 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 94/372 (25%), Positives = 154/372 (41%), Gaps = 29/372 (7%)

Query: 446 KMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           ++E        I+ +   GI I+   +G  + +N            +   +     +   
Sbjct: 327 QLEENEQFNRKIVASAPVGICILRINDGTNILSNELAHNYLNLLTHEDRLR--ITRIICE 384

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564
             S     +                   T     L +  +  +    +     + D+S  
Sbjct: 385 QQSKFVDVM-------------------TSRNHHLQISFVHSRYRNENVAICVLLDVSAR 425

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
            + +  L      AE+ S  KS FLA VSHE+RTPL  IIG  ++++ +      N    
Sbjct: 426 VKMEESLQEMANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKSLPQDAN---- 481

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
                ++ S +L+L I++D+LD SKIES ++ +     +  E +S   S       +KR+
Sbjct: 482 RLVAAMNNSSSLLLKIISDILDFSKIESEQLKIEACEFAPHEVISHITSNYLPLVVKKRL 541

Query: 685 LIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
            +      N+P  +  D   ++Q+  N+LSNAI FT +G  II          +   VRD
Sbjct: 542 TLYCFIDPNVPVSLFGDPVRLQQVLSNLLSNAIKFTDTG-CIIFEVGCRD-GYLEFVVRD 599

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TGVG+   E  K   PF Q  +  Q   +GTGLGL + + +V+   G   I S P  G+L
Sbjct: 600 TGVGIQPREAVKLFDPFFQAGSGVQRHFQGTGLGLAICEKLVNLMDGDITIESEPGLGSL 659

Query: 804 IEIIFPLYDTSH 815
             +  PLY   +
Sbjct: 660 FGVRIPLYKAHY 671


>gi|154252800|ref|YP_001413624.1| PAS/PAC sensor signal transduction histidine kinase [Parvibaculum
           lavamentivorans DS-1]
 gi|154156750|gb|ABS63967.1| PAS/PAC sensor signal transduction histidine kinase [Parvibaculum
           lavamentivorans DS-1]
          Length = 902

 Score =  295 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 92/771 (11%), Positives = 231/771 (29%), Gaps = 71/771 (9%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKM--IGMRLCDVSDILHIDPNNH------IGDLL 137
            W + A G     +  + + IG     +        +      + P++       +   L
Sbjct: 161 LWRLTADGEPIFFNRRMIEFIGMDVGDLGNSRRNRMEDLIDSFVHPDDAHAMKQALAQSL 220

Query: 138 KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG 197
                +  +  L   +G  +Y  +   A P+          + +G+ H            
Sbjct: 221 TTGQHFVMRYRLRRTDG--VYHWMSSRAEPLRDHVGRIV--QWYGLCHDIDDQVKAEEAV 276

Query: 198 KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL-----RMKNKVSSLTEYYAHKDD 252
           +  +++   + +    H        D+                     + + +   H DD
Sbjct: 277 RESEQQLQGIIDAVPVHIWSWTPSGDLAYVSKRYLAHLGLSEANFEDFTRVAQELVHPDD 336

Query: 253 VLKTEKYPLLTSE-ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP-- 309
               +     +     +   +    + +      +     L N       +         
Sbjct: 337 APGVQATAAASLASGDAFAMRYRRLSKDGAYRWMEGRCEPLHNRDGTILHWYGVSIDIDD 396

Query: 310 --SLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
                      +    + +D  P+    +S  G + YA+  +L          I     L
Sbjct: 397 QVRAEEALRASKRQLEQMIDALPVNILSFSPSGEMTYASKRYLERVGIPPH--IRNFDTL 454

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDR--TCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
           +  +  P+         +    +D         +R    + +      +        +  
Sbjct: 455 ARDVAHPEDFP-----VMFRRATDGFAAGTPFVSRFRRREKDG-VYRWIEARAHPLRDTD 508

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
              +       +  +    ++ +      L  ++E     I     +G     ++ +++ 
Sbjct: 509 DTIVQWYIAAIDIEEEMHAQQALRESERTLRQLIETLPALIYCAAPDGKPTYRSQQLTEF 568

Query: 485 FGYPVED-------ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
            G+ ++D        L       +  +  ++++      L+      L         +  
Sbjct: 569 LGFGLDDKDETGVSRLVSTLDAIIHPDDLALVHEKYGHSLATGKPYALRH--RLRRFDGV 626

Query: 538 LLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSH--KSDFLAR 591
              +      +       +       DI    + + +L  A+    + S     ++  A 
Sbjct: 627 YRWVETRAAPMCNDEGEIVQWNGVCIDIDSEVRTQEELRLAQDRLARASHAAGLAELSAS 686

Query: 592 VSHEIRTPLTAIIGFSE----VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           ++HE+  PL AI+  S      +  +   P    R       I R  N   DIV+ +  +
Sbjct: 687 IAHEVNQPLAAIVANSHACHHWLSAE---PANMERAKITVERIIRDANGAADIVSRIRAL 743

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707
            K    +         L   ++E   L+      +R+ +    A+ +P I  D   ++Q+
Sbjct: 744 FK----QSTETRVVTPLSSVITEIRELLTDEVTRRRVHMEVDIADGLPPIALDRVQIQQV 799

Query: 708 ALNILSNAIHFT---PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764
            +N++ N +      P   ++ +      +  + + + D+G G+     EK  +PF    
Sbjct: 800 LINLIRNGMEAMGSVPGRRELRLRVRFIEDA-IRVELSDSGPGI--ELSEKIFEPFFTT- 855

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
                +  G G+GL + +++V+++ G+ +  +    G       P+  T+ 
Sbjct: 856 -----KERGMGMGLAICRSIVESHGGRLWAENNTPHGATFVFALPVEATAA 901



 Score =  152 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 55/538 (10%), Positives = 138/538 (25%), Gaps = 41/538 (7%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKM--------IGMRLCDVSDILHIDPNNHI-GD 135
           F W+ D+ G    +S +    +GN +  +         G     V      D        
Sbjct: 28  FAWSADSAGQFTYVSPKALVFLGNTSADLNTADEEDEFG--WRTVVHPDDYDRVAARWRH 85

Query: 136 LLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA 195
            L+    +  +  L   +G  +Y     +  P        +  + +G            A
Sbjct: 86  CLRTGEHYDTEHRLRRTDG--VYRWFRNSGRPSRDSEGRIT--QWYGTTIDIEDQKQAEA 141

Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS----------PPPHLRMKNKVSSLTE 245
             +  +++ S L ++   H        +                       +N++  L +
Sbjct: 142 TLRDREQELSQLVDMVPSHLWRLTADGEPIFFNRRMIEFIGMDVGDLGNSRRNRMEDLID 201

Query: 246 YYAHKDDV-LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
            + H DD     +      +       +      +   +        L+++     ++  
Sbjct: 202 SFVHPDDAHAMKQALAQSLTTGQHFVMRYRLRRTDGVYHWMSSRAEPLRDHVGRIVQWYG 261

Query: 305 ----HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDD 359
                 +         E E      +D  P+  + ++  G+L Y +  +L          
Sbjct: 262 LCHDIDDQVKAEEAVRESEQQLQGIIDAVPVHIWSWTPSGDLAYVSKRYLAHLGLSEA-- 319

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
                  + +       D+          S  +  A + R   +  +      M      
Sbjct: 320 --NFEDFTRVAQELVHPDDAPGVQATAAASLASGDAFAMRYRRLSKDGA-YRWMEGRCEP 376

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
             N+    +   G+  +  D    +  +     QL  +++A    I   +  G +   ++
Sbjct: 377 LHNRDGTILHWYGVSIDIDDQVRAEEALRASKRQLEQMIDALPVNILSFSPSGEMTYASK 436

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
              +  G P            +       +  +                     K+    
Sbjct: 437 RYLERVGIPPHIRNFDTLARDVAHPEDFPVM-FRRATDGFAAGTPFVSRFRRREKDGVYR 495

Query: 540 SLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
            +      L  +      + +   DI E    +  L  +++   +        +   +
Sbjct: 496 WIEARAHPLRDTDDTIVQWYIAAIDIEEEMHAQQALRESERTLRQLIETLPALIYCAA 553



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 30/278 (10%), Positives = 72/278 (25%), Gaps = 15/278 (5%)

Query: 314 YFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
             D       + ++  P   +   S G   Y +P  L+     S D              
Sbjct: 10  ETDPESMRALQIIESMPGFAWSADSAGQFTYVSPKALVFLGNTSADLNTADEEDEFGWRT 69

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
               D+            RT        H ++                 +         G
Sbjct: 70  VVHPDDYDRVAARWRHCLRTGEHYDTE-HRLRRTDGVYRWFRNSGRPSRDSEGRITQWYG 128

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
              +  D +  +  +     +L  +++     +  +  +G  +  NR + +  G  V D+
Sbjct: 129 TTIDIEDQKQAEATLRDREQELSQLVDMVPSHLWRLTADGEPIFFNRRMIEFIGMDVGDL 188

Query: 493 LRKP-------FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
                         F+  +    M   L + L+      +         +     +    
Sbjct: 189 GNSRRNRMEDLIDSFVHPDDAHAMKQALAQSLTTGQHFVMR--YRLRRTDGVYHWMSSRA 246

Query: 546 KKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAE 579
           + L       +      HDI +  + +  +  +++  +
Sbjct: 247 EPLRDHVGRIVQWYGLCHDIDDQVKAEEAVRESEQQLQ 284


>gi|312881713|ref|ZP_07741490.1| hybrid sensory histidine kinase BarA [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309370603|gb|EFP98078.1| hybrid sensory histidine kinase BarA [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 927

 Score =  295 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 83/341 (24%), Positives = 148/341 (43%), Gaps = 13/341 (3%)

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTE-ILSLDLRQTLEKITLGSTKEEKLLSLRI 543
            G       R  + V         M   +    L + +   +             +++ +
Sbjct: 185 LGLSAVFAHRLMYDVTRPITHMKKMVDRIRRGHLDVRIEGKMHGELDSLKSGINAMAVSL 244

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
               +           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 245 SEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTP 304

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+  +              +Y   I++S + +L I+ D+LD SK+E+GK+ L  
Sbjct: 305 LNGVIGFTRQMLKTSLTA----SQTDYLQTIEKSADNLLSIIKDILDFSKLEAGKLALEN 360

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P    E++ E +SL    A+EK + +       IP  ++ D   ++QI  N++ N+I F
Sbjct: 361 IPFDFQESLEEVVSLQATSAHEKGLELTLKVDPKIPLGLVGDPLRIQQILTNLVGNSIKF 420

Query: 719 TPSGG---QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T  G     + + +    + E+   VRDTG+G++  +  +  + F Q   S   +  GTG
Sbjct: 421 TEYGNIDVSVELRSQKEDSVELQFMVRDTGIGISERQQSQLFQAFSQADASISRKYGGTG 480

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           LGL + + +V    G+  + S   +G+       L  T  P
Sbjct: 481 LGLVITQKLVSQMGGEISLTSRLHQGSTFWFTLRLSSTDMP 521


>gi|290474713|ref|YP_003467593.1| sensory histidine kinase in two-component regulatory system with
           PhoB, regulation of Pi uptake, senses Pi [Xenorhabdus
           bovienii SS-2004]
 gi|289174026|emb|CBJ80813.1| sensory histidine kinase in two-component regulatory system with
           PhoB, regulation of Pi uptake, senses Pi [Xenorhabdus
           bovienii SS-2004]
          Length = 437

 Score =  295 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 77/404 (19%), Positives = 156/404 (38%), Gaps = 43/404 (10%)

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469
            L +       A +        GI       R  +R++ + + +  S  E+  D I ++ 
Sbjct: 56  WLWLDRSMLPPAGRGGWEPIFYGIYQLQQRNRKRRRELALLIKRFRSGAESLPDAIVMMT 115

Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
            EG I   NR    L G+   +   +     L     S                   +  
Sbjct: 116 TEGNIFWCNRLAQHLLGFRWPEDNGQHIFNLLRYPDFSRYI----------TASHFSRPL 165

Query: 530 LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
                  +++  R++           +   DI++ +  +              + + DF 
Sbjct: 166 SIELNNGRMVEFRVMPY---AERMLLMVARDITQKRLLE--------------NARRDFF 208

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
           + VSHE+RTPLT + G+ E+++ Q      N +     + +      +  +V  LL +S+
Sbjct: 209 SNVSHELRTPLTVLQGYLEMMQEQELNDRANQKV---LSTMQEQVRRMDGLVKQLLHLSR 265

Query: 650 IESGKMNLHFEPVSLDEAVS--EAISLVQLYA---NEKRILIRTSFANNIPRILADLRSV 704
           IE+G        V ++E V   + + L+Q  A      +  I  +    + ++  +   +
Sbjct: 266 IEAGPQ------VDMNEVVDVPDLLVLLQQEALALANNQQDIVFNIDEKL-KVFGNEEQL 318

Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764
           +    N++ NAI+ TP G +I +S + +S      +V+D G G++   L +  + F ++ 
Sbjct: 319 RSAMSNLVYNAINHTPPGTRIEVSWSKSSQG-AWFKVQDNGSGISAEHLPRLTERFYRVD 377

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            ++  +  G+GLGL + K  +        + ST  KG+    + 
Sbjct: 378 RARSRQTGGSGLGLAIVKHALHHYNTHLEVSSTMGKGSTFSFLL 421


>gi|209547893|ref|YP_002279810.1| multi-sensor signal transduction histidine kinase [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|209533649|gb|ACI53584.1| multi-sensor signal transduction histidine kinase [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 713

 Score =  295 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 69/382 (18%), Positives = 154/382 (40%), Gaps = 26/382 (6%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            +E E ++  +++  T D + +I+  G I S N A   +FGY  ++ + +   + + +  
Sbjct: 328 NLETERVRFGALVRGTPDAVIVIDESGTIRSFNPAAESMFGYTPQETIGRNIKMLMPEPY 387

Query: 506 PSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKL--PFSSCYSLTMHDI 561
            S  + YL         + +   ++  G  +   +  + + I  +    +  +   + DI
Sbjct: 388 HSEHDGYLAHYRKTGEERIIGTTRMVSGRRRNGIVFPIDVSISAVSTGDAKIFVGIVRDI 447

Query: 562 SEWKQEKN-------KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
           SE  +++        +L       E+ +    +F    SH+++ PL  +   S  +    
Sbjct: 448 SERARQEERMKTTLAQLEAYTAELERSNHDLDEFAYIASHDLKEPLRGLHNHSRFLLEDY 507

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
              L +       N + R    +  +VNDLL  S++  G+  L  +   +   V + ++ 
Sbjct: 508 EDKLDDDGVRR-LNRLVRLSQRMEKLVNDLLYFSRL--GRQQLAVKRSDIGLIVKDVVAT 564

Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS- 733
           ++L   E+   +       +P ++ D   + ++  N+++NAI +      + +S  +   
Sbjct: 565 MELLLEERHAKVI--IDGQLPDVVCDAPRLTEVFRNLITNAIKYNDKPAPL-VSIGYLDR 621

Query: 734 ----NEEV---ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
               +  +   +  VRD G G+     E   + F ++  SQ    +GTG GL   + ++ 
Sbjct: 622 FVGQDGTIARNVFFVRDNGKGIPQEFHEDIFRIFKRLEKSQDSD-DGTGAGLTFVRKIIA 680

Query: 787 ANMGKFYIFSTPAKGTLIEIIF 808
            + G  ++ S    GT      
Sbjct: 681 RHNGDIWLESEVGTGTTFYFTL 702



 Score = 61.2 bits (147), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 42/366 (11%), Positives = 95/366 (25%), Gaps = 34/366 (9%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD-ILHIDPNNHIGDLLKRQNTWYGKT 147
           ID  G ++  +       G    + IG  +  +     H + + ++    K        T
Sbjct: 350 IDESGTIRSFNPAAESMFGYTPQETIGRNIKMLMPEPYHSEHDGYLAHYRKTGEERIIGT 409

Query: 148 TLWPIEGT---NLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK-RLDKK 203
           T   + G     +  PID++   + + + +       GIV             K  L + 
Sbjct: 410 TRM-VSGRRRNGIVFPIDVSISAVSTGDAKIF----VGIVRDISERARQEERMKTTLAQL 464

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
            ++  E+++ +  +++  Y        P      +    L +Y    DD        L+ 
Sbjct: 465 EAYTAELERSNHDLDEFAYIASHDLKEPLRGLHNHSRFLLEDYEDKLDDDGVRRLNRLVR 524

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
             +       D    +             Q  + +  +          +      E    
Sbjct: 525 LSQRMEKLVNDLLYFSRLGR---------QQLAVKRSDIGLIVKDVVATMELLLEERHAK 575

Query: 324 ETVD-KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
             +D + P            + N     +        +   G L   +      D    +
Sbjct: 576 VIIDGQLPDVVCDAPRLTEVFRNLITNAIKYNDKPAPLVSIGYLDRFVGQ----DGTIAR 631

Query: 383 PVMLYRSDRTCIAASARLHTIQW----------NRENSLAMTFIPFEKANQFPENMPQNG 432
            V   R +   I         +           +      +TF+    A    +   ++ 
Sbjct: 632 NVFFVRDNGKGIPQEFHEDIFRIFKRLEKSQDSDDGTGAGLTFVRKIIARHNGDIWLESE 691

Query: 433 IEPEDV 438
           +     
Sbjct: 692 VGTGTT 697


>gi|218549941|ref|YP_002383732.1| phosphate regulon sensor protein [Escherichia fergusonii ATCC
           35469]
 gi|218357482|emb|CAQ90121.1| sensory histidine kinase in two-component regulatory system with
           PhoB [Escherichia fergusonii ATCC 35469]
 gi|324114619|gb|EGC08587.1| phosphate regulon sensor kinase PhoR [Escherichia fergusonii B253]
 gi|325498317|gb|EGC96176.1| phosphate regulon sensor protein [Escherichia fergusonii ECD227]
          Length = 431

 Score =  295 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 80/427 (18%), Positives = 156/427 (36%), Gaps = 37/427 (8%)

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             +L       I     L  + W     L +         +        GI    +  + 
Sbjct: 33  WFLLASVTGLLIWHFWNLLRLSW----WLWVDRSMTPPPGRGSWEPLLYGIHQMQLRNKK 88

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            +R++   + +  S  E+  D + +   EG I   N    +L G    D   +     L 
Sbjct: 89  RRRELGNLIKRFRSGAESLPDAVILTTEEGGIFWCNGLAQQLLGLRWPDDSGQNILNLLR 148

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
               +               +   +         + L +R++           +   D++
Sbjct: 149 YPEFAHYL----------KSRDFSRPINLVLNNGRHLEIRVMPY---TDRQLLMVARDVT 195

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  Q +                + +F A VSHE+RTPLT + G+ E++  Q        +
Sbjct: 196 QMHQLEG--------------ARRNFFANVSHELRTPLTVLQGYLEMMHEQPLEGATREK 241

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                + +    + +  +V  LL +SKIE+  +    E V +   +       Q  +  K
Sbjct: 242 A---LHTMREQTHRMEGLVKQLLTLSKIEAAPVLALNEQVDVPMMLRVVEREAQTLSQNK 298

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
              I     N I ++L +   ++    N++ NA++ TP G +I +     ++  V   V 
Sbjct: 299 H-KITFDIDNQI-KVLGNEDQLRSAISNLVYNAVNHTPEGTKIAVRWQRVAHG-VEFSVE 355

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G G+T   L +  + F ++  ++  +  G+GLGL + K  ++ +  + +I STP  GT
Sbjct: 356 DNGPGITAEHLPRLTERFYRVDKARSRQTGGSGLGLAIVKHALNHHESRLHIESTPGVGT 415

Query: 803 LIEIIFP 809
               + P
Sbjct: 416 RFSFVLP 422


>gi|156740993|ref|YP_001431122.1| PAS/PAC sensor signal transduction histidine kinase [Roseiflexus
           castenholzii DSM 13941]
 gi|156232321|gb|ABU57104.1| PAS/PAC sensor signal transduction histidine kinase [Roseiflexus
           castenholzii DSM 13941]
          Length = 396

 Score =  295 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 74/367 (20%), Positives = 156/367 (42%), Gaps = 44/367 (11%)

Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522
           DG+ +++ +  +   N    +L        + +   +          ++ +  ++   + 
Sbjct: 56  DGLVLVDADRRVQYLNAHAEELLNLSRTVSVGQGLIML-------ARDYQVDAMVEEAIA 108

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISEWKQEKNKLSHAKKIAEKE 581
               + ++      +  +LR+    L        L + D+++  Q +             
Sbjct: 109 SAEPRESILQ-PLGRQRTLRLRAVPLDHGTKGALLLVRDVTQLSQLE------------- 154

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
              + D +A VSHE+RTPL +I    E +++    P+         + I +  + +  +V
Sbjct: 155 -RSRRDLVANVSHELRTPLASIKLLVETLQSDPPAPVA----QRMLSQIAQEVDAITQLV 209

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701
            +L ++S+IESG++ L   P  L   V+  I  ++     K I +     +++P  L D 
Sbjct: 210 EELHELSQIESGRVALQLVPTPLAPLVAHTIERIRPQMERKSIRVIACLPDDLPPALIDG 269

Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTT-----------------HTSNEEVILRVRDT 744
             V Q+ LN+L NA  FTP GGQ+ I  +                 H   + +++ + D 
Sbjct: 270 NRVGQVLLNLLHNASKFTPDGGQVAIEASVIMVGDGSPLPPGIPSSHLPGQWLLVSIADN 329

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G+   +L +  + F ++  ++     GTGLGL +AK +V+ + G+ +  S   +G++ 
Sbjct: 330 GIGIPARDLARIFERFYKVDRARTRNAGGTGLGLAIAKHLVEGHGGRIWATSVEGEGSIF 389

Query: 805 EIIFPLY 811
            +  P+ 
Sbjct: 390 YLTLPVA 396


>gi|228966539|ref|ZP_04127592.1| hypothetical protein bthur0004_33490 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228793261|gb|EEM40811.1| hypothetical protein bthur0004_33490 [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 510

 Score =  295 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 98/529 (18%), Positives = 197/529 (37%), Gaps = 39/529 (7%)

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTK 353
           +S +   + +                +        P     +   G + + NPS   +  
Sbjct: 7   SSTQRKRHPNISRRLRNHIQDRSLTEMYVSLFKHNPDSIISLNLEGVILHINPSAEKILG 66

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
           Y S++ +E     S L       + +  + V+    +         + +I       L +
Sbjct: 67  YNSLE-LEQKNITSIL-------EAHISEQVLQNIKNTGADNQQEYILSIYHKNGFLLDV 118

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
                    Q         ++P +   RI +  ++    +L +++ +    +   + EG 
Sbjct: 119 VTKLVPIFVQNCLTGVYAIMKPLEKSERI-ENMLKESEKRLRTLVNSMPAFVIFKDHEGR 177

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN----HYLTEILSLDLRQTLEKIT 529
            L  N      F +       K  +  ++ N            + E+     RQ L    
Sbjct: 178 WLEANDYALSCFNFHHVPYHGKKDSELIQYNEAYREAFLHCEEVDELAWQ-QRQILHGEE 236

Query: 530 LGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
               +++  L L I    L           +   D++E K+ +  L  ++K+A       
Sbjct: 237 FIIHRDDFDLILSISKVPLYHPDGSRKGLIVMGRDVTELKETEKLLRKSEKLAVV----- 291

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
               A ++HEIR PLT++ GF  ++      P  N     Y + +    + +  I +  +
Sbjct: 292 GQLTAGIAHEIRNPLTSLKGFLTLLL-----PEINEEQKWYIDVMLSEISQMESITSQFM 346

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
            +SK +     L  +  ++   + E ++ +   A    + I     +    I  D   +K
Sbjct: 347 AMSKPQ----VLSIQTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYKHDIQCDGNQLK 402

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           Q+ +NIL NAI   P+GG I I T    +  +++R+ D G G+    + +  +PF     
Sbjct: 403 QVFINILKNAIEAMPNGGNIYIQTKPFEDTFILIRIIDEGCGIPEDRISRLGEPFY---- 458

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
              ++ +GTGLGL +   +++ + GK +I S   KGT+++I  PL  + 
Sbjct: 459 --SLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTIVDIQLPLSSSH 505


>gi|163867812|ref|YP_001609016.1| hypothetical protein Btr_0574 [Bartonella tribocorum CIP 105476]
 gi|161017463|emb|CAK01021.1| conserved hypothetical protein [Bartonella tribocorum CIP 105476]
          Length = 562

 Score =  295 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 128/463 (27%), Positives = 214/463 (46%), Gaps = 35/463 (7%)

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
            ++   G   L    +  +    +   L   +R+     A     + N            
Sbjct: 120 QLKGFRGFGVLKVQEQRDEKLETEMPRLTEIERSAFREIAEQLRDELNSSVKEENFVEKT 179

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
                +P+ +P N I          ++ +  E   + S+LE  +DG+  ++ +G I S +
Sbjct: 180 AIQLPYPQTLPVNAI----------EQALIKEPAAVLSLLETATDGVLWLDEQGFIQSAS 229

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS--TKEE 536
           RA   L GY + ++  +PF+ F    +  ++  Y   I      Q L +       TK  
Sbjct: 230 RAALALMGYEINELRGQPFSSFFTLQSRFLVEKYFKLIRMKGKNQVLNRSETADLMTKSH 289

Query: 537 KLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
           K  ++ I I  L     Y++ + D ++    + + +   K            +  V HEI
Sbjct: 290 KNRTVLITIVFLAPQGNYAVMLRDRTKKVLSEEEKAEENK------------IVGVVHEI 337

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI---ESG 653
           RTPL A+IGF+E++K  RFG + N RY  Y   I  SG  +L ++N+LL+ SKI   +S 
Sbjct: 338 RTPLNALIGFAEIMKEGRFGSIENERYHGYLRDIISSGKHILSLINELLECSKINYSDSN 397

Query: 654 KM---NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710
                +L  E   +   +   I+ ++  AN   I++R     ++P I    +  +QI  N
Sbjct: 398 NQVDSSLISEQFDVISCLRATIAFLETQANHNGIIMRIVAPPHVPFIPVSQQMFRQIIWN 457

Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           +LSNAI FT  GGQII+  ++     + + V D G+GM+  E+  A++P+GQ+       
Sbjct: 458 LLSNAIRFTSLGGQIIVHVSYRKE-RIKISVSDNGIGMSEEEIAHALQPYGQVERKDGRS 516

Query: 771 GE----GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           G+    GTGLGLP+ KAMV+ + G+F +FS P  GT +E+ FP
Sbjct: 517 GDSVFMGTGLGLPMCKAMVEESGGEFLLFSKPNHGTTVEMFFP 559



 Score =  133 bits (335), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 87/226 (38%), Gaps = 8/226 (3%)

Query: 63  SNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS 122
           SN      +  F F P      FTW ID +G   E+S+EL + +G  +  ++G    +++
Sbjct: 9   SNNELKCKQEAFCFIPELLPRPFTWKIDHNGLFCEVSKELAEVVGPLSSSILGCGFHELA 68

Query: 123 DILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFG 182
              + +    +   ++    W  +   WP++G + ++ ++L+ALPI+   ++  GFRGFG
Sbjct: 69  HQFNDERYLVLSRFIEAAMPWSKEVVQWPVDGCSQWLDVELSALPIFDVKKQLKGFRGFG 128

Query: 183 IV-----HVNRVDNDPRALGKRLDKKFSHLHEIKKGH---SSVEKEKYDIFSQQSPPPHL 234
           ++        +++ +   L +     F  + E  +     S  E+   +  + Q P P  
Sbjct: 129 VLKVQEQRDEKLETEMPRLTEIERSAFREIAEQLRDELNSSVKEENFVEKTAIQLPYPQT 188

Query: 235 RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINL 280
              N +             L       +   +     Q        
Sbjct: 189 LPVNAIEQALIKEPAAVLSLLETATDGVLWLDEQGFIQSASRAALA 234


>gi|257060613|ref|YP_003138501.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 8802]
 gi|256590779|gb|ACV01666.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 8802]
          Length = 763

 Score =  295 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 74/253 (29%), Positives = 130/253 (51%), Gaps = 7/253 (2%)

Query: 563 EWKQEK--NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK--NQRFGPL 618
           E +  +   +L      A+  +  KS+FL+ +SHE+RTPLT IIG S  +   + +   L
Sbjct: 362 EQRVIERTQELRDTLIAAQSANHSKSEFLSNMSHELRTPLTCIIGLSGTLLHWSAQSKSL 421

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
              +  +Y   I  SG  +L+++N++L+ SK+E+GK  L  +  SL +A       ++  
Sbjct: 422 PLQKQQQYLQTIQDSGKHLLEMINEILEYSKLEAGKYVLSIQQFSLQKAAQNIHKKLRQE 481

Query: 679 ANEKRI--LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
           A +++I   +            AD   ++QI  ++L+NA+ FTP GG +I+        E
Sbjct: 482 AVKRKINLQLELQIEPQENFFFADPERLQQILYHLLNNALKFTPEGGTVILRI-WREGNE 540

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
            I +V DTG+G+   ++    + F Q+  S++    GTGLGL L K +V+ + G   + S
Sbjct: 541 AIFQVEDTGIGIAQEQIPLLFESFQQLETSRRRTYGGTGLGLALTKQLVELHGGTIEVES 600

Query: 797 TPAKGTLIEIIFP 809
              +G++  +  P
Sbjct: 601 VLQEGSIFTVRLP 613


>gi|149277588|ref|ZP_01883729.1| sensory transduction histidine kinase [Pedobacter sp. BAL39]
 gi|149231821|gb|EDM37199.1| sensory transduction histidine kinase [Pedobacter sp. BAL39]
          Length = 1069

 Score =  295 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 84/528 (15%), Positives = 186/528 (35%), Gaps = 32/528 (6%)

Query: 294  NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLT 352
             +S       +      L     + E    +  +   I   + S  G     N S   + 
Sbjct: 558  EDSLVGAISFNITERRKLEEELYQSEAQFQQAFEHSLIGMAIISPQGRWERVNSSLCSIL 617

Query: 353  KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR--SDRTCIAASARLHTIQWNRENS 410
             Y++ +       L+ +        ++    + + +  +             +  +    
Sbjct: 618  GYEASE-------LTNMTIQDITHPDDLQDSMSILKDLASGKISEYKYEKRYVHKDGH-M 669

Query: 411  LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470
            + +        +   E +       +  + +  +  + +   +  +I E   D     + 
Sbjct: 670  IWVVIAATMLNDSAGEPLHYVSQIEDITNRKHIENDLVLSEKKYRTIFENVQDVFYQTDP 729

Query: 471  EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530
            +GII   + ++ +  GYP  +I+ +    F            + E++S      ++    
Sbjct: 730  QGIITEISPSIEQYSGYPRLEIVGQSVVHFYYYPQDR--ERIMQELISKG--SVIDFEVR 785

Query: 531  GSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
              TK E+L    +  + L           +M D++  K ++N L          +  KS 
Sbjct: 786  LKTKNEELRYASVNARTLIEDGVVKGTEGSMRDVTVRKFQENALKALNTELTASNDQKSK 845

Query: 588  FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
             L+ + H++R P++  +     +    F          Y + +        +++ DLL  
Sbjct: 846  LLSIIGHDLRNPISGSLQLL-NLTLMDFESSSAEDVQNYLSMMRAELFNANNLLEDLLAW 904

Query: 648  SKIESGKMNLHFEPV-SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706
            +K +   ++ +   +  L   + + +  +   A++K I ++    + + ++ AD   ++ 
Sbjct: 905  AKSQFESVSFNPVQIQDLKGLIDKCMQTILPMASKKEIDMQLYVEDGL-QVKADTAMLET 963

Query: 707  IALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
            I  N+LSNA+ FT SGG++++         V   V+D GVG+   + E+         NS
Sbjct: 964  IIRNLLSNAVKFTQSGGKVLLG-AFEDEIGVTFSVKDNGVGIPAIKQEELFN-----KNS 1017

Query: 767  Q-----QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
                      +GTGLGL L    V  + G  ++ S    G       P
Sbjct: 1018 NYTTFGTSGEKGTGLGLSLCFDFVVKHGGMMWVESDEGLGATFYFTLP 1065



 Score =  115 bits (287), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 64/508 (12%), Positives = 140/508 (27%), Gaps = 76/508 (14%)

Query: 89  IDA---HG-YLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKRQNTW 143
            DA    G  +  +++ L +  G    +++G       +     +    I + + ++   
Sbjct: 266 TDANALDGPKIIYVNDALVQMSGFSRTELVGSSPSIFHAHDDAQEGLKRIENAVHKKIPC 325

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +   +   G +  +   +   P+   N E + +    I      + D     +  +K+
Sbjct: 326 TLELVNYTKSGVSYAIS--MNVCPVTDTNGEVTHW--VSIQRDITENRDYIQEIEDQNKR 381

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
              +  ++                    P +R+ +    L      +D            
Sbjct: 382 LKTIGWMQSHLVR--------------DPLVRIISLTDILQNGCTGED------------ 415

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
                       H   L+   K                       P         E    
Sbjct: 416 ------------HGKLLSYLKKSTAELDAIIQEINKNTNDIAEMDPDQHVML-MNERRFQ 462

Query: 324 ETVDKCPIPFFV-YSHGNLFYANPSFLL-------LTKYKSVDDIEIAGGLSTLLDAPKL 375
             +D+ P   ++   HG L YAN  FL        +      +   +       L   ++
Sbjct: 463 LFMDELPGLCWIIDRHGILKYANKCFLESNNLTRAVIGKSYEEVFGVDIARIAYLSNQEV 522

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
            D N                  A   + + +  +        F   +   E+     I  
Sbjct: 523 LDLNES---------------KAYYQSRRGSSGHLQYFKTYKFPFRDVDGEDSLVGAISF 567

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
              + R  + ++     Q     E +  G+AII+ +G     N ++  + GY   ++   
Sbjct: 568 NITERRKLEEELYQSEAQFQQAFEHSLIGMAIISPQGRWERVNSSLCSILGYEASELTNM 627

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-- 553
                   +        L ++ S       +       K+  ++ + I    L  S+   
Sbjct: 628 TIQDITHPDDLQDSMSILKDLAS-GKISEYKYEKRYVHKDGHMIWVVIAATMLNDSAGEP 686

Query: 554 --YSLTMHDISEWKQEKNKLSHAKKIAE 579
             Y   + DI+  K  +N L  ++K   
Sbjct: 687 LHYVSQIEDITNRKHIENDLVLSEKKYR 714



 Score = 99.7 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/386 (10%), Positives = 122/386 (31%), Gaps = 40/386 (10%)

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNL-FYANPSFLLLT 352
             +                      E      V +      +     +  Y +P+   + 
Sbjct: 103 GRAARVVLITDITEKLKAEEALQFSEKRFKALVQEGADLIAIIDLNLVYKYVSPTSTTVL 162

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
                + I         +    L + + +  ++                    + +    
Sbjct: 163 GIPPENFIGRTAA--DFIHPEDLPEVSRLAGMLATHHQVHIGPYRF------MDNKGEWR 214

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR-- 470
                     +            +  +    +  +++    L S++  T+DG+ I +   
Sbjct: 215 WIETRATNLTEDEHIGGIVCNSTDITERMEEEHWLKL----LESVVINTTDGVMITDANA 270

Query: 471 -EG-IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528
            +G  I+  N A+ ++ G+   +++    ++F   +        +   +   +  TL   
Sbjct: 271 LDGPKIIYVNDALVQMSGFSRTELVGSSPSIFHAHDDAQEGLKRIENAVHKKIPCTL--E 328

Query: 529 TLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
            +  TK     ++ + +  +  ++     +     DI+E +    ++    K  +     
Sbjct: 329 LVNYTKSGVSYAISMNVCPVTDTNGEVTHWVSIQRDITENRDYIQEIEDQNKRLKTIGWM 388

Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
           +       SH +R PL  II  +++++N   G      + +  +Y+ +S   +  I+ ++
Sbjct: 389 Q-------SHLVRDPLVRIISLTDILQNGCTG----EDHGKLLSYLKKSTAELDAIIQEI 437

Query: 645 ----LDISKIESGK--MNLHFEPVSL 664
                DI++++  +  M ++     L
Sbjct: 438 NKNTNDIAEMDPDQHVMLMNERRFQL 463



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 29/260 (11%), Positives = 81/260 (31%), Gaps = 32/260 (12%)

Query: 325 TVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVD----------DIEIAGGLSTLLDA 372
             +  P+P +V+          N + + L  Y+  +           +E A  LS +L  
Sbjct: 9   LFENSPLPMWVFDVETFAFLDVNLAAIALYGYEREEFLQMTLLDIKAVEDADSLSRMLGD 68

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
                       +  +     I  S   + + ++   +  +                   
Sbjct: 69  QPCGAGYFKGLSVHIKKGGYNINVSVESNAVDFDGRAARVVLI----------------- 111

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
              +  +    +  ++    +  ++++  +D IAII+   +    +   + + G P E+ 
Sbjct: 112 --TDITEKLKAEEALQFSEKRFKALVQEGADLIAIIDLNLVYKYVSPTSTTVLGIPPENF 169

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII-IKKLPFS 551
           + +    F+       ++     + +           + +  E + +  R   + +    
Sbjct: 170 IGRTAADFIHPEDLPEVSRLAGMLATHHQVHIGPYRFMDNKGEWRWIETRATNLTEDEHI 229

Query: 552 SCYSLTMHDISEWKQEKNKL 571
                   DI+E  +E++ L
Sbjct: 230 GGIVCNSTDITERMEEEHWL 249



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 53/511 (10%), Positives = 147/511 (28%), Gaps = 60/511 (11%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID +   K +S      +G      IG    D      +   + +  +L   +  +    
Sbjct: 145 IDLNLVYKYVSPTSTTVLGIPPENFIGRTAADFIHPEDLPEVSRLAGMLATHHQVHIGPY 204

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
            + ++    +  I+  A  + + +    G              +     K L+    +  
Sbjct: 205 RF-MDNKGEWRWIETRATNL-TEDEHIGGI--VCNSTDITERMEEEHWLKLLESVVINTT 260

Query: 209 EIKKGHSSVEKEKYDIFSQQSPP----PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
           +      +   +   I              R +   SS + ++AH D     ++      
Sbjct: 261 DGVMITDANALDGPKIIYVNDALVQMSGFSRTELVGSSPSIFHAHDDAQEGLKRIENAVH 320

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
           ++     +   +T +   Y        + + + E   ++S +   +      E  +   E
Sbjct: 321 KKIPCTLELVNYTKSGVSYAISMNVCPVTDTNGEVTHWVSIQRDIT------ENRDYIQE 374

Query: 325 TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
             D+                N              ++  G + + L    L    ++  +
Sbjct: 375 IEDQ----------------NKR------------LKTIGWMQSHLVRDPLVRIISLTDI 406

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
           +                    +    L+       + +   + + +N    +  +   ++
Sbjct: 407 LQNGCTGE-------------DHGKLLSYLKKSTAELDAIIQEINKN--TNDIAEMDPDQ 451

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
             M +   +    ++       II+R GI+   N+   +        ++ K +      +
Sbjct: 452 HVMLMNERRFQLFMDELPGLCWIIDRHGILKYANKCFLESNNLTRA-VIGKSYEEVFGVD 510

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDIS 562
              +      E+L L+  +   +   GS+   +         +              +I+
Sbjct: 511 IARIAYLSNQEVLDLNESKAYYQSRRGSSGHLQYFKTYKFPFRDVDGEDSLVGAISFNIT 570

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
           E ++ + +L  ++   ++   H    +A +S
Sbjct: 571 ERRKLEEELYQSEAQFQQAFEHSLIGMAIIS 601



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 80/638 (12%), Positives = 180/638 (28%), Gaps = 80/638 (12%)

Query: 12  DILTSNCKGNTQD--LSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLD 69
           DIL + C G      LS  K        KS  E          N  D  +        L 
Sbjct: 405 DILQNGCTGEDHGKLLSYLK--------KSTAELDAIIQEINKNTNDIAEMDPDQHVMLM 456

Query: 70  SENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPK-------TIGNYAFKMIGMRLCDVS 122
           +E  F            W ID HG LK  ++   +        IG    ++ G+ +  ++
Sbjct: 457 NERRFQLFMDELPG-LCWIIDRHGILKYANKCFLESNNLTRAVIGKSYEEVFGVDIARIA 515

Query: 123 DILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAAL-PIYSRNRE--FSGFR 179
            + +        ++L    +   K       G++ ++        P    + E    G  
Sbjct: 516 YLSN-------QEVLDLNES---KAYYQSRRGSSGHLQYFKTYKFPFRDVDGEDSLVGAI 565

Query: 180 GFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRM 236
            F I               + + +F    E      ++   +       S          
Sbjct: 566 SFNI----TERRKLEEELYQSEAQFQQAFEHSLIGMAIISPQGRWERVNSSLCSILGYEA 621

Query: 237 KNKVSSLTEYYAHKDDVLKTEKY--PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294
               +   +   H DD+  +      L + + S    ++ +   + +          L +
Sbjct: 622 SELTNMTIQDITHPDDLQDSMSILKDLASGKISEYKYEKRYVHKDGHMIWVVIAATMLND 681

Query: 295 NSKESFEYLSHRNHPSLSAYFD----EGENLTPETVDKCPIPFFVYSH-GNLFYANPSFL 349
           ++ E   Y+S     +   + +      E       +     F+     G +   +PS  
Sbjct: 682 SAGEPLHYVSQIEDITNRKHIENDLVLSEKKYRTIFENVQDVFYQTDPQGIITEISPSIE 741

Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
             + Y  ++ +  +               +  + +    S  + I    RL T       
Sbjct: 742 QYSGYPRLEIVGQSVVHFYYY------PQDRERIMQELISKGSVIDFEVRLKTKNEELRY 795

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469
           +        E            G   +    +  +  ++    +L +  +  S  ++II 
Sbjct: 796 ASVNARTLIED----GVVKGTEGSMRDVTVRKFQENALKALNTELTASNDQKSKLLSIIG 851

Query: 470 REGIILSTNR--AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
            +      N      +L    + D          E ++   + +YL+ + +         
Sbjct: 852 HDLR----NPISGSLQLLNLTLMD---------FESSSAEDVQNYLSMMRAELFNANNLL 898

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESS 583
             L +  + +  S+     ++            T+  ++  K+   +L     +  K  +
Sbjct: 899 EDLLAWAKSQFESVSFNPVQIQDLKGLIDKCMQTILPMASKKEIDMQLYVEDGLQVKADT 958

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
              + +      IR  L+  + F++       G   + 
Sbjct: 959 AMLETI------IRNLLSNAVKFTQSGGKVLLGAFEDE 990



 Score = 58.1 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/142 (13%), Positives = 48/142 (33%), Gaps = 3/142 (2%)

Query: 457 ILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           + E +   + + + E    L  N A   L+GY  E+ L+              ++  L +
Sbjct: 9   LFENSPLPMWVFDVETFAFLDVNLAAIALYGYEREEFLQMTLLDIKAVEDADSLSRMLGD 68

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575
                       + +        +S+          +   + + DI+E  + +  L  ++
Sbjct: 69  QPCGAGYFKGLSVHIKKGGYNINVSVESNAVDFDGRAARVVLITDITEKLKAEEALQFSE 128

Query: 576 KIAEKESSHKSDFLARVSHEIR 597
           K  +      +D +A +  ++ 
Sbjct: 129 KRFKALVQEGADLIAII--DLN 148


>gi|124001988|ref|ZP_01686842.1| two-component hybrid sensor and regulator, putative [Microscilla
           marina ATCC 23134]
 gi|123992454|gb|EAY31799.1| two-component hybrid sensor and regulator, putative [Microscilla
           marina ATCC 23134]
          Length = 860

 Score =  295 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 108/757 (14%), Positives = 243/757 (32%), Gaps = 50/757 (6%)

Query: 74  FVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI 133
            VF+  P   +F  ++D    + + +      +G +  ++    L D+ +   +      
Sbjct: 131 QVFENSPIP-KFLLSLDN--KVLKANRAFCLMLGYHPEEVCQKSLPDIINPDDLPSFVLY 187

Query: 134 GDLLKRQ--NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN 191
              +  +    +  +       G  + V        +Y    +   F    I    +   
Sbjct: 188 QTKVANKQLGHFELEKRFLHKTG--VEVFTSAHTSLLYDDALQTECFYVQAI--NTQARK 243

Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ-SPPPHLRMKNKVSSLTEYYAHK 250
           +     +R     +   E      +      D          + + + K  S+ +     
Sbjct: 244 EAEFERERFRSILNQAGESIIIADAQSGAIIDFNHTACRSLGYSQAELKQLSVNDVIKED 303

Query: 251 DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYF--GTLQNNSKESFEYLSHRNH 308
              L+     L+ +   ++  Q      + + Y  +      + + +   +       N 
Sbjct: 304 RVALRQRFDALIRNPRKAIHFQVILQRKDKSHYPAQVSVNYRSFRGHKYLTAIARDISNE 363

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
                   EGE       ++  +   +    GN    N +   +  Y   + +++     
Sbjct: 364 LDSEIRILEGEARFKSIFEETHMGIALTDARGNFVECNQALADMLGYTREEMVDLHIMDI 423

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
              D  ++   N      +   +             +    + L          ++    
Sbjct: 424 AYPDDIQVPVENIQDFFKVRSLE----------KQYRKKNGDILWGRLTNSTIRDKHGRL 473

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
           +   G+  +    ++ + K       L SI E  S+GI     +  ++  N A + LFG+
Sbjct: 474 LFGVGMIEDITARKLAEEKNIEHEALLNSINENLSEGIYRSTLDEGLIYINPAFALLFGF 533

Query: 488 PV--EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
               E     P  ++ ++     +   L +           +  L   K+       +  
Sbjct: 534 TRITEAYTVHPNDLYYDERQREKLLSILEK-----EGYFKNQEVLFKRKDGSTFWGLLNS 588

Query: 546 KKLPFSSC---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
                 +    Y  T+ DIS  K+ +  L       +K +S    F+   SH++R PLT+
Sbjct: 589 HVTRSKTGKTFYDGTIIDISTKKESEELLMSKNVALQKINSELDRFVYSASHDLRAPLTS 648

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           I+G   +   +       P    Y   I +S + +   V D+++ SK  + ++ +  + +
Sbjct: 649 ILGLVHIANTEN----PPPNLATYLEMIKQSIHKLDIFVQDIINYSK--NSRLKIATKAI 702

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSF---ANNIPRILADLRSVKQIALNILSNAIHFT 719
            + + V ++   +Q     + I          + +    +D   +  I  N +SNAI + 
Sbjct: 703 DIQQLVQQSFDNLQFMKGSESIDKTVEVLKTNDAVAGFYSDPTRLTIIFNNTISNAIKYH 762

Query: 720 PSGGQ---IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
               +   + +         V + + D G G+    +++    F +          G+GL
Sbjct: 763 NPFAERPFVKVRALINEEG-VDIEIEDNGKGIPAENIDRIFDMFYRASEDSN----GSGL 817

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
           GL + K  V+   G   + S   KGT I I  P ++ 
Sbjct: 818 GLYIVKETVEKLRGDVMLHSELDKGTTITISLPSHEA 854



 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 49/508 (9%), Positives = 138/508 (27%), Gaps = 37/508 (7%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI--GDLLKRQNTWYGKTTLWPI 152
           +  +++   + +      ++G +L  +S        +        + ++ +Y +T     
Sbjct: 24  ILAVNDGFSRLLSVNRSAVVGKKLIALSQWDTQQTLDRYVTEATTQSESKYYHETVWQMA 83

Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212
           +G+  ++ +D     +          +          +    A   R  K    + E   
Sbjct: 84  DGSPKHLRLDCNITSVS------PNAQVMLTFLDIDREKQLEAQLARQTKVRQQVFENSP 137

Query: 213 GHSSVEKEKYDIFSQQSPP-------PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
               +      +              P    +  +  +         VL   K       
Sbjct: 138 IPKFLLSLDNKVLKANRAFCLMLGYHPEEVCQKSLPDIINPDDLPSFVLYQTKVANKQLG 197

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
                 ++ F      +     +   L +++ ++  +     +       +         
Sbjct: 198 H--FELEKRFLHKTGVEVFTSAHTSLLYDDALQTECFYVQAINTQARKEAEFERERFRSI 255

Query: 326 VDKCPIPFFVYSH--GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
           +++      +     G +   N +      Y   + ++       +    +       + 
Sbjct: 256 LNQAGESIIIADAQSGAIIDFNHTACRSLGYSQAE-LKQLSVNDVI---KEDRVALRQRF 311

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
             L R+ R  I     L     +   +             F  +     I  +  +   +
Sbjct: 312 DALIRNPRKAIHFQVILQRKDKSHYPAQV-----SVNYRSFRGHKYLTAIARDISNELDS 366

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
           + ++     +  SI E T  GIA+ +  G  +  N+A++ + GY  E+++          
Sbjct: 367 EIRILEGEARFKSIFEETHMGIALTDARGNFVECNQALADMLGYTREEMVDLHIMDIAYP 426

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SLTMH 559
           +   V    + +                  K   +L  R+    +             + 
Sbjct: 427 DDIQVPVENIQDFFK-----VRSLEKQYRKKNGDILWGRLTNSTIRDKHGRLLFGVGMIE 481

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSD 587
           DI+  K  + K    + +    + + S+
Sbjct: 482 DITARKLAEEKNIEHEALLNSINENLSE 509



 Score = 73.1 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/265 (11%), Positives = 74/265 (27%), Gaps = 15/265 (5%)

Query: 323 PETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
            +T++  P+P  +       +   N  F  L        +       +  D  +  D   
Sbjct: 4   ADTLEFIPLPALLLDVTSRQILAVNDGFSRLLSVNRSAVVGKKLIALSQWDTQQTLDRYV 63

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
            +         T  + S   H   W   +                 N        +    
Sbjct: 64  TEA--------TTQSESKYYHETVWQMADGSPKHLRLDCNITSVSPNAQVMLTFLDIDRE 115

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +  + ++  +      + E +     +++ +  +L  NRA   + GY  E++ +K     
Sbjct: 116 KQLEAQLARQTKVRQQVFENSPIPKFLLSLDNKVLKANRAFCLMLGYHPEEVCQKSLPDI 175

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSL 556
           +  +       Y T++ +  L    E       K    +        L        C+ +
Sbjct: 176 INPDDLPSFVLYQTKVANKQLGH-FELEKRFLHKTGVEVFTSAHTSLLYDDALQTECFYV 234

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKE 581
              +    K+ + +    + I  + 
Sbjct: 235 QAINTQARKEAEFERERFRSILNQA 259


>gi|95930432|ref|ZP_01313168.1| multi-sensor signal transduction histidine kinase [Desulfuromonas
           acetoxidans DSM 684]
 gi|95133472|gb|EAT15135.1| multi-sensor signal transduction histidine kinase [Desulfuromonas
           acetoxidans DSM 684]
          Length = 679

 Score =  295 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 86/460 (18%), Positives = 187/460 (40%), Gaps = 28/460 (6%)

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
            +         +    L   +A +   L RS    +     +    W    +L +  +  
Sbjct: 235 AVRKDWPQLRSILQKALDTIDAQQRQSLIRSWVQPLPQQHPISRRMWLILAALVIGALVV 294

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
                    + +  ++      +    + EI    + +IL++ +DG+ + NR+  ++  N
Sbjct: 295 MVWVFAWNRLLKRQVQQRTAQLQRALFEAEISRDNVDAILKSVADGLIVANRDNRVILMN 354

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE--E 536
           RA  +L G  ++    +     L        + YL+ +          +  +    E   
Sbjct: 355 RAAEQLLGTSLDQSYLQAIDTVLAS---PESSRYLSRVFEQGDDCGAVEWVVEGVGEQQG 411

Query: 537 KLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
           + +  R  + +    +       + D++  +              +    K++F++  +H
Sbjct: 412 RTIQARTAVVQAQHGNRSRTITIVRDVTRER--------------ELDRMKNEFISTAAH 457

Query: 595 EIRTPLTAIIGFSEVIKN-QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           E+RTPLTA++G++E++ + + F  +           I      +  IV DLLD+S++ SG
Sbjct: 458 ELRTPLTAVMGYTELLLHPEEFNVIEPKEQNRVLTTIYEKACRLEGIVADLLDLSRVHSG 517

Query: 654 KM-NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712
            +  L      ++  +  A+   Q     +   +     +    + AD + ++Q+  N+L
Sbjct: 518 CLIALSRASCDINSLLCRAVGGYQY---RQDFTVALELDSEEVVLWADEKKLEQVMDNLL 574

Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           SNA+ F+    Q+ +   H  ++  ++ V D G+GMT  ++E+    F ++ +S      
Sbjct: 575 SNAVKFSSESCQVFVR-GHRDDDVYVIEVEDHGIGMTPKQVERVFDKFYRVDSSDT-APG 632

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
           G GLG+ + K +V+A+ G   + S P +GT I +  P+  
Sbjct: 633 GLGLGMSIVKNIVEAHSGTIEVQSVPGQGTCITVRLPIEP 672


>gi|327193898|gb|EGE60773.1| hypothetical protein RHECNPAF_1340019 [Rhizobium etli CNPAF512]
          Length = 538

 Score =  294 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 109/446 (24%), Positives = 188/446 (42%), Gaps = 11/446 (2%)

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
           L      +    + + + R      +A+     +  +   S A+                
Sbjct: 48  LSRTGGGEAVRQRELAILRRLVLLSSAALVAAPVGLSAVTSPAVALPAGVAMVCAAFLFS 107

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
             G               +       S+   T   +  ++  G + +      + F   +
Sbjct: 108 AVGSIALARQGSSAGIATQSAEDFFLSV---TPGLVLFLDPHGSVATIGGRDRRDFLAWM 164

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS---TKEEKLLSLRIIIK 546
            D   + F   +  +   +    L  +   +   +++           + +   LR+ + 
Sbjct: 165 RDPKGRGFLEQVHVSDRILFLQALDGLRRGEDAASVDLRLDRPSVSRDQRQFAYLRMDMT 224

Query: 547 KLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
               +          + D+S  +Q + +       AE  +  KS FLA VSHE+RTPL A
Sbjct: 225 ARRDADGELAAVIAQLRDVSVEQQLRAEAQSRAADAESANDAKSRFLAAVSHELRTPLNA 284

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           I+GFS+++  + FG   N R  EY   +  SG  +L +VN +LD+SKIE+G+  L  E  
Sbjct: 285 ILGFSDILIGEYFGKFENDRQREYVGLVRESGAHLLSVVNTMLDMSKIEAGRYELILEAF 344

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
            +  +V    S++ L A  K + + +    ++  I+AD R+++QI +N++ NA+ FT +G
Sbjct: 345 DISASVRSCESMLALQAKTKGVTLTSRIQRSLGEIVADQRAIQQILINLVGNAVKFTEAG 404

Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
           G + I         + L V DTG+G+   +L    +PF QI N    R EGTGLGL L K
Sbjct: 405 GVVSIDAAARD-GILKLTVSDTGIGIAADKLALLGQPFVQIQNDYTRRFEGTGLGLSLVK 463

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIF 808
            +V  + G F I S P +GT+I I  
Sbjct: 464 GLVALHGGNFAIASQPGEGTIITIEI 489


>gi|94266984|ref|ZP_01290632.1| PAS:Response regulator receiver:CHASE [delta proteobacterium
           MLMS-1]
 gi|93452318|gb|EAT02952.1| PAS:Response regulator receiver:CHASE [delta proteobacterium
           MLMS-1]
          Length = 875

 Score =  294 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 103/682 (15%), Positives = 223/682 (32%), Gaps = 76/682 (11%)

Query: 184 VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL 243
             V    +  RA  +       +L        +++ E      +      +     ++++
Sbjct: 39  AEVLDQLSALRAHLESALNSRLYLVRSLAAQIAIQPEIDRREFEWLAAEMIAADPVINTI 98

Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303
                   + +   K          L   E    +  +   ++ +        +    Y+
Sbjct: 99  ALARDGVINHIYPRKGHEAALGLDLLAHPERRAVVERSIAQRRGFVAGPVEMVEGGEAYI 158

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVD-DIEI 362
           S++             +     VD       +     L  A  +        +++  +  
Sbjct: 159 SYKPVFLAPDPETGRGDDFWGMVD-----ITIRHPKLLEVAGVA----PGPANLEVALRG 209

Query: 363 AGGLST---LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE----NSLAMTF 415
             GL     L    +     A +P+ +  +  +     A L T  W         L    
Sbjct: 210 RDGLGAAGELFWGDEAV--FAAEPLTMGVTLPSGSWEIAALPTGGWPMASPLTPFLWGAG 267

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
           +                              ++    +   ++E  +  +  ++ +G + 
Sbjct: 268 LLIALLAATLAWFLARIPLRLREQVAAATASLKASESKYRELVENANSIVLKMDLQGRVT 327

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS--LDLRQTLEKITLGST 533
             N    + FGY  E+I+ +     +              I     +  Q          
Sbjct: 328 FFNEYAQRFFGYREEEIMGREVVGTIVPGRDLAGRDLAAMIKDVFENPGQYTSNENENRK 387

Query: 534 KEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSH------ 584
           ++   + +    + +             +DI+  K+ +++L   ++  E+  +       
Sbjct: 388 RDGSRVWVSWTNRAIYEDGELTGLLCIGNDITRLKEAEDQLRRHQQELEEMVNARTDELL 447

Query: 585 ------------KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
                       KS FL+ +SHEIRTPL  IIGFS +       P       +Y   I  
Sbjct: 448 TANAELNRVSAYKSRFLSAMSHEIRTPLQTIIGFSNLALEGGSQPP-----RQYLEMIKT 502

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
           +G+ +L+++N +LD++KIESG++ L        E + + +      A ++ +   TS   
Sbjct: 503 AGDTLLELINGILDLAKIESGRLELAERCFKPAEFIGKTLEPYAFAARQRGLAFDTSIDP 562

Query: 693 NIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN----------------- 734
            +P  ++ D   + Q+ +N++ NA+ FT  G +I++S    ++                 
Sbjct: 563 AVPGEVVGDPARLTQVLVNLVGNALKFTEEG-EIVVSVRPAADDADRRPTVGAGRAEVAP 621

Query: 735 --------EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
                     +   VRD+G G+   +  +    F Q   +      G GLGL +A ++V+
Sbjct: 622 PAASDATSGLLHFTVRDSGSGIAAEQQGRIFTRFAQGEGA--SPHGGHGLGLAIAASLVE 679

Query: 787 ANMGKFYIFSTPAKGTLIEIIF 808
              G+ ++ S P +G+      
Sbjct: 680 LMGGEIWLESRPGEGSSFHFTI 701



 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/267 (10%), Positives = 66/267 (24%), Gaps = 13/267 (4%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK-----RQ 140
              +D  G +   +E   +  G    +++G  +              +  ++K       
Sbjct: 317 VLKMDLQGRVTFFNEYAQRFFGYREEEIMGREVVGTIVPGRDLAGRDLAAMIKDVFENPG 376

Query: 141 NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
                +      +G+   V +      IY  + E +G     I +      +     +R 
Sbjct: 377 QYTSNENENRKRDGS--RVWVSWTNRAIY-EDGELTGL--LCIGNDITRLKEAEDQLRRH 431

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV-SSLTEYYAHKDDVLKTEKY 259
            ++   +   +         + +  S         M +++ + L       +  L+    
Sbjct: 432 QQELEEMVNARTDELLTANAELNRVSAYKSRFLSAMSHEIRTPLQTIIGFSNLALEGGSQ 491

Query: 260 PLLTSEES-SLPEQEDFHTINLNQYTKKQYFGTLQ-NNSKESFEYLSHRNHPSLSAYFDE 317
           P     E            IN      K   G L+             +     +    +
Sbjct: 492 PPRQYLEMIKTAGDTLLELINGILDLAKIESGRLELAERCFKPAEFIGKTLEPYAFAARQ 551

Query: 318 GENLTPETVDKCPIPFFVYSHGNLFYA 344
                  ++D       V     L   
Sbjct: 552 RGLAFDTSIDPAVPGEVVGDPARLTQV 578


>gi|90412091|ref|ZP_01220098.1| putative sensor histidine kinase/response regulator [Photobacterium
           profundum 3TCK]
 gi|90327069|gb|EAS43448.1| putative sensor histidine kinase/response regulator [Photobacterium
           profundum 3TCK]
          Length = 897

 Score =  294 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 87/341 (25%), Positives = 157/341 (46%), Gaps = 17/341 (4%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           LF Y +   + +P +  +      V++      L + +   L             +++ +
Sbjct: 160 LFAYRLMQDVTRPISHMVS-----VVDRIRRGHLDIRIEGQLLGELDTLKNGINAMAISL 214

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
               +           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 215 SEYHIEMQQSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTP 274

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+  +   R          +Y   I++S N +L I+ND+LD SK+E+GK+ L  
Sbjct: 275 LNGVIGFTRQMLKTRLSS----SQHDYLLTIEKSANNLLTIINDILDFSKLEAGKLLLEN 330

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P    E++ E + L+   A+EK + +     + IP  ++ D   ++Q+  N++ NA+ F
Sbjct: 331 IPFDFTESLDEVMRLLAPSAHEKGLELTLKVDHRIPAGLIGDPLRIQQVVTNLIGNAVKF 390

Query: 719 TPSGG---QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T  G     + +  +   N E+   VRDTG+G++  +  +  + F Q   S   R  GTG
Sbjct: 391 TERGNIDVSVELKASKDENIELQFTVRDTGIGISERQQAQLFQAFSQADASISRRYGGTG 450

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           LGL + + +V    G+  + S   +G+       +  T  P
Sbjct: 451 LGLVITQKLVTQMGGEISLTSRLHQGSTFWFSLKMLKTDLP 491


>gi|323703046|ref|ZP_08114701.1| multi-sensor signal transduction histidine kinase [Desulfotomaculum
           nigrificans DSM 574]
 gi|323531940|gb|EGB21824.1| multi-sensor signal transduction histidine kinase [Desulfotomaculum
           nigrificans DSM 574]
          Length = 582

 Score =  294 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 79/396 (19%), Positives = 176/396 (44%), Gaps = 26/396 (6%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
              A      + Q   E +  D R    ++  +      I    S G+ I+N++G++   
Sbjct: 206 VAVAKAVEAGLRQFLTERQLKDIRKTLSQLVQQRD---VIFNDMSQGVIILNKDGVVTFF 262

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
           N A  +++  P ++   K     L+          L + +      T  +    +   +K
Sbjct: 263 NAAAQRIWCIPPDEAGGKSIENLLKNCPRK--ESLLNKTIREGKPFTNIECKCRNHLHDK 320

Query: 538 LLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
           +L +   + +   ++         D+++ ++++ ++   +K+A           A ++HE
Sbjct: 321 ILLVNTSVLRDENNNINGAIGIFTDVTDLRRQEARIREQEKLAVV-----GQMAAGMAHE 375

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           IR PLT++ GF++ +  ++ G   NP + EY   + +  +     +N+ L +++    KM
Sbjct: 376 IRNPLTSVRGFAQ-LMKEKIGEQNNP-FKEYVEIMIQEIDQADSFINNFLQLARPTPPKM 433

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715
            +     S+++ +   + + +  A  +   + T     +P ++ D   +KQ+ LN+  NA
Sbjct: 434 QV----CSVNDLIKNFVRIFENQAFLQGTKVLTDL-REVPPLVIDSAQIKQVLLNLCQNA 488

Query: 716 IHFTPSGGQIIISTTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           +     GG + +++++ ++  E+ + V D G G+   +L+K   PF    +      +GT
Sbjct: 489 LQALGQGGTLTLASSYQADTREIRVDVIDNGPGIPPEDLDKIGTPFYTTKD------KGT 542

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           GLGL ++ A+VD + G+  + S   +GT   I  P+
Sbjct: 543 GLGLSISYAIVDRHKGRVEVDSKVGQGTRFSIYLPV 578



 Score = 42.3 bits (98), Expect = 0.32,   Method: Composition-based stats.
 Identities = 16/188 (8%), Positives = 49/188 (26%), Gaps = 12/188 (6%)

Query: 280 LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-H 338
            + YT        +       ++L+ R    +     +         +       + +  
Sbjct: 197 ESPYTFSLMVAVAKAVEAGLRQFLTERQLKDIRKTLSQLVQQRDVIFNDMSQGVIILNKD 256

Query: 339 GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398
           G + + N +   +      +       +  LL             +     +        
Sbjct: 257 GVVTFFNAAAQRIWCIPPDEA--GGKSIENLLKN----CPRKESLLNKTIREGKPFTNIE 310

Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458
                  + +    +        ++        GI  +  D R  + ++  E  +L +++
Sbjct: 311 CKCRNHLHDK---ILLVNTSVLRDENNNINGAIGIFTDVTDLRRQEARIR-EQEKL-AVV 365

Query: 459 EATSDGIA 466
              + G+A
Sbjct: 366 GQMAAGMA 373


>gi|325109831|ref|YP_004270899.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
            5305]
 gi|324970099|gb|ADY60877.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
            5305]
          Length = 1434

 Score =  294 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 120/785 (15%), Positives = 237/785 (30%), Gaps = 79/785 (10%)

Query: 86   TWNIDAHGYLKEISEELPKTIGNYAFKM--IGMRLCDVSDILHIDPN-NHIGDLLK-RQN 141
             W+ D    L E +E +    G    ++        D+            I   ++  Q 
Sbjct: 531  IWDWDLLTDLVEWNEGVTTRFGYSPEQVGATAQWWYDMIHPEDAARVTGGIKQAIRIGQE 590

Query: 142  TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
             W  +      +G+  Y  +      ++   R     R  G +             +  +
Sbjct: 591  IWQDEYRYRRADGS--YADVFDRGRVVFQDGRAV---RMVGAMFDLTDRKRAEQALRESE 645

Query: 202  KKFSHLHEIKKGHSSVEKEKYDIFSQQSP----PPHLRMKNKVSSLTEYYAHKDDVLKTE 257
            ++     E     +       +                       +     H DD    +
Sbjct: 646  ERVRLAVEAANIGTWDFDLVQNRLDWSERCKAIFGLPSDAEITYDVFLERLHPDDREAVD 705

Query: 258  KY---PLLTSEESSLPEQEDFHTINLNQYTKKQYF-------GTLQNNSKESFEYLSHRN 307
                  +  +   S          +                    +   + S   L   +
Sbjct: 706  LIVQDSIAPAGNGSYEVDYRVCWPDGTIRWVIARGQCVFADEAAGRAPVRFSGTVLDITD 765

Query: 308  HPSLSAYFDEGENLTPETVDKCPI-PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
               +     + E    +  D      +     G +F+ N  +   T   ++++++  G  
Sbjct: 766  RKLIEQALQDSEEKFRDLADNISQFAWMADEKGWIFWYNKRWFEYTG-TTLEEMQGWGWQ 824

Query: 367  STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
            S         D+       L RS  T I        ++                 N+  +
Sbjct: 825  SV-----HHPDHLERVVEKLQRSWDTGIPWE-DTFPLRSKDGEYRWFLSRAQPILNEQGQ 878

Query: 427  NMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL----------EATSDGIAIINREGIILS 476
             +   G   +  + + ++        Q+  +           + TS    +     +I+ 
Sbjct: 879  IVRWFGTNTDIEELKRSEAAARRRSEQVRRLAGVATRLGIAHDVTSVAGIVTREAHLIVD 938

Query: 477  TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN----------HYLTEILSLDLRQTLE 526
             NRA   L+         KP   F   +                  +T++   +    L 
Sbjct: 939  ANRARMDLW----LQGRDKPVQCFASSSEREATESGPSASSWEAALITDVSENNAPLRLN 994

Query: 527  KITLGSTKEEKLLSLRIIIKKLPFSSCY-------------------SLTMHDISEWKQE 567
               L +   E       +   L                            +  +++    
Sbjct: 995  FEQLQTRFPEAEPLNGWMAAPLVDRHGRNLGGLSLTRSEPGEFSADDEAVLVQLAQMTSV 1054

Query: 568  KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
              + +   +  ++    K +FLA ++HE+R PL  I    EV++     P          
Sbjct: 1055 AIENARLFENLQQNDRRKDEFLATLAHELRNPLAPIRTGLEVLRVSDNDPETLEEVR--- 1111

Query: 628  NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
              ++R    ++ +V+DLLD+S+I  GKM L    V L E    AI   +   +E    + 
Sbjct: 1112 GIMERQTQQLVTLVDDLLDVSRITRGKMELRKCEVRLREVARNAIDTARPLIDEAGHRLI 1171

Query: 688  TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747
             SF +    +  D     QI  N+L+NA  +TP GG I         +  ++R+RD+GVG
Sbjct: 1172 ESFPDQPITLFVDPHRFAQILSNLLNNAAKYTPDGGTIEFKGEL-DGDTAVIRIRDSGVG 1230

Query: 748  MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEI 806
            +      +  + F QI    +    G G+GL L K++V+ + G   + S  P  G+   +
Sbjct: 1231 IPAEMRSQIFEMFAQIDRPHEKVSTGLGIGLTLVKSLVEMHDGTVEVLSEGPNCGSEFIV 1290

Query: 807  IFPLY 811
              P++
Sbjct: 1291 RLPVF 1295



 Score =  116 bits (290), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 30/424 (7%), Positives = 107/424 (25%), Gaps = 26/424 (6%)

Query: 190 DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP-------PHLRMKNKVSS 242
             +  A  +  + ++  + +             D+              P          
Sbjct: 506 RKESEAKLRERELRYRLIGQAANDVIWDWDLLTDLVEWNEGVTTRFGYSPEQVGATAQWW 565

Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF-- 300
               +      +       +   +    ++  +   + +          +  + +     
Sbjct: 566 YDMIHPEDAARVTGGIKQAIRIGQEIWQDEYRYRRADGSYADVFDRGRVVFQDGRAVRMV 625

Query: 301 -EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVD 358
                  +         E E      V+   I  + +    N    +     +    S  
Sbjct: 626 GAMFDLTDRKRAEQALRESEERVRLAVEAANIGTWDFDLVQNRLDWSERCKAIFGLPSDA 685

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
           +I     L  L    + + +  ++  +    + +        + + W       +     
Sbjct: 686 EITYDVFLERLHPDDREAVDLIVQDSIAPAGNGSYE----VDYRVCWPDGTIRWVIARGQ 741

Query: 419 ---EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
                       +  +G   +  D ++ ++ ++    +   + +  S    + + +G I 
Sbjct: 742 CVFADEAAGRAPVRFSGTVLDITDRKLIEQALQDSEEKFRDLADNISQFAWMADEKGWIF 801

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
             N+   +  G  +E++    +      +    +   L       +    E      +K+
Sbjct: 802 WYNKRWFEYTGTTLEEMQGWGWQSVHHPDHLERVVEKLQRSWDTGIPW--EDTFPLRSKD 859

Query: 536 EKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
            +        + +         +  T  DI E K+ +       +   + +   +     
Sbjct: 860 GEYRWFLSRAQPILNEQGQIVRWFGTNTDIEELKRSEAAARRRSEQVRRLAGVATRL--G 917

Query: 592 VSHE 595
           ++H+
Sbjct: 918 IAHD 921



 Score =  113 bits (284), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 59/563 (10%), Positives = 139/563 (24%), Gaps = 66/563 (11%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN----HIGDLLKRQN 141
              I   G +  ++    + +G  A + IG R   V  +            I + L+R  
Sbjct: 236 VLTISQTGEIAALNLSAEQLMGWSAEEAIGQRWSTVVTLKSRQQERTDASLIREALERGQ 295

Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
           +   + +   +        +D+   P+ +   +  G     +           A  K   
Sbjct: 296 SATFQESTVLVTRAGEERAVDVHVSPVRNSTGQRDGA--VLVFRDVSERRQQEAALKDRA 353

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
              S   ++    +S    +  +               V+      A  +  L+      
Sbjct: 354 LLTSIRADVSASLASSLDTQSVLVQCCVALRTHLNAKSVAIWRSSEAEGEWQLQAAVGEN 413

Query: 262 LTSEESSLPEQEDFHTINLNQYTKK---------------------------------QY 288
               +  L        +++   + +                                 + 
Sbjct: 414 ADHLQKLLSLDTLPSGVDVRLNSAEVCEVPTVQLRNGTETDSEQEQSIVTAFPLFVEGRA 473

Query: 289 FGTLQNNSKESFEYLSHR-------------NHPSLSAYFDEGENLTPETVDKCPIPFFV 335
           FG L   S ES   L  +                   A   E E              + 
Sbjct: 474 FGILGIESAESLPPLLRQGLTPKGEAIAQYLQRKESEAKLRERELRYRLIGQAANDVIWD 533

Query: 336 YSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394
           +     L   N        Y        A     ++     +       +         I
Sbjct: 534 WDLLTDLVEWNEGVTTRFGYSPEQVGATAQWWYDMIHPEDAAR--VTGGIKQAIRIGQEI 591

Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
                    +    +   +         Q    +   G   +  D +  ++ +     ++
Sbjct: 592 WQDEY--RYRRADGSYADVFDRGRVVF-QDGRAVRMVGAMFDLTDRKRAEQALRESEERV 648

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE-DILRKPFTVFLEQNTPSVMNHYL 513
              +EA + G    +     L  +     +FG P + +I    F   L  +    ++  +
Sbjct: 649 RLAVEAANIGTWDFDLVQNRLDWSERCKAIFGLPSDAEITYDVFLERLHPDDREAVDLIV 708

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLS-------LRIIIKKLPFSSCYSLTMHDISEWKQ 566
            + ++     + E        +  +         +            +S T+ DI++ K 
Sbjct: 709 QDSIAPAGNGSYEVDYRVCWPDGTIRWVIARGQCVFADEAAGRAPVRFSGTVLDITDRKL 768

Query: 567 EKNKLSHAKKIAEKESSHKSDFL 589
            +  L  +++     + + S F 
Sbjct: 769 IEQALQDSEEKFRDLADNISQFA 791



 Score = 78.5 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 32/321 (9%), Positives = 84/321 (26%), Gaps = 27/321 (8%)

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
                ED   +N  +           N+   +    +     S               + 
Sbjct: 39  LRNAVEDMAAVNRLRTGTAVRLADYLNSYTNAVREFAIDRRESDRMRAQRRAQSVEAVL- 97

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML- 386
                 +               +L+ +     +      + LL      +    + +   
Sbjct: 98  ----ADYREDVAAGVETEAELDVLSGWTGFQQLG-----TRLLSDAAQPEAATAETLRQF 148

Query: 387 ---------YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
                            +      T +      L                +         
Sbjct: 149 IDRSLMLQSRVKTELLTSERGAYDTRKNAAITGLNTILRFAAMLLCIGLLVAIGTSYAVG 208

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
                +++ +     QL + L +  D +  I++ G I + N +  +L G+  E+ + + +
Sbjct: 209 RSVINDQQNLAAAEEQLRTTLGSIGDAVLTISQTGEIAALNLSAEQLMGWSAEEAIGQRW 268

Query: 498 TVFLEQNTPSVMN---HYLTEILSLDLRQTLEK--ITLGSTKEEKLLSLRIIIKK--LPF 550
           +  +   +          + E L      T ++  + +    EE+ + + +   +     
Sbjct: 269 STVVTLKSRQQERTDASLIREALERGQSATFQESTVLVTRAGEERAVDVHVSPVRNSTGQ 328

Query: 551 SSCYSLTMHDISEWKQEKNKL 571
                L   D+SE +Q++  L
Sbjct: 329 RDGAVLVFRDVSERRQQEAAL 349



 Score = 75.4 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 35/451 (7%), Positives = 116/451 (25%), Gaps = 46/451 (10%)

Query: 178 FRGFGIVHVNRVDNDPRALGKRLDK--KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR 235
             G  +++  +         +        + L   + G  +      +     S    + 
Sbjct: 206 AVGRSVINDQQNLAAAEEQLRTTLGSIGDAVLTISQTGEIAALNLSAEQLMGWSAEEAIG 265

Query: 236 MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN 295
            +       +    +       +  L   + ++  E     T    +     +   ++N+
Sbjct: 266 QRWSTVVTLKSRQQERTDASLIREALERGQSATFQESTVLVTRAGEERAVDVHVSPVRNS 325

Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTPET--------------VDKCPIPFFVYSHGNL 341
           + +    +      S     +                       +D   +          
Sbjct: 326 TGQRDGAVLVFRDVSERRQQEAALKDRALLTSIRADVSASLASSLDTQSVLVQCCVALR- 384

Query: 342 FYANPSFLLLTKYKSVD--------DIEIAGGLSTLL--------DAPKLSDNNAIKPVM 385
            + N   + + +    +          E A  L  LL           +L+     +   
Sbjct: 385 THLNAKSVAIWRSSEAEGEWQLQAAVGENADHLQKLLSLDTLPSGVDVRLNSAEVCEVPT 444

Query: 386 LYRSDRTCIAAS-----ARLHTIQWNRENSLAMTFIPFEKANQFPEN--MPQNGIEPEDV 438
           +   + T   +           +         +     E           P+     + +
Sbjct: 445 VQLRNGTETDSEQEQSIVTAFPLFVEGRAFGILGIESAESLPPLLRQGLTPKGEAIAQYL 504

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI--LRKP 496
             + ++ K+    ++   I +A +D I   +    ++  N  V+  FGY  E +    + 
Sbjct: 505 QRKESEAKLRERELRYRLIGQAANDVIWDWDLLTDLVEWNEGVTTRFGYSPEQVGATAQW 564

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---C 553
           +   +     + +   + + + +  ++  +        +     +    + +        
Sbjct: 565 WYDMIHPEDAARVTGGIKQAIRIG-QEIWQDEYRYRRADGSYADVFDRGRVVFQDGRAVR 623

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
               M D+++ K+ +  L  +++        
Sbjct: 624 MVGAMFDLTDRKRAEQALRESEERVRLAVEA 654



 Score = 70.8 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 47/396 (11%), Positives = 104/396 (26%), Gaps = 14/396 (3%)

Query: 69   DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID 128
            DSE  F  D      +F W  D  G++   ++   +  G    +M G     V    H++
Sbjct: 775  DSEEKFR-DLADNISQFAWMADEKGWIFWYNKRWFEYTGTTLEEMQGWGWQSVHHPDHLE 833

Query: 129  P-NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187
                 +         W     L   +G   Y      A PI +   +    R FG     
Sbjct: 834  RVVEKLQRSWDTGIPWEDTFPLRSKDGE--YRWFLSRAQPILNEQGQIV--RWFGTNTDI 889

Query: 188  RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247
                   A  +R  ++   L  +      +  +   +    +   HL +    + +  + 
Sbjct: 890  EELKRSEAAARRRSEQVRRLAGVATRL-GIAHDVTSVAGIVTREAHLIVDANRARMDLWL 948

Query: 248  AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
              +D  ++            S P    +    +   ++      L     ++    +   
Sbjct: 949  QGRDKPVQCFASSSEREATESGPSASSWEAALITDVSENNAPLRLNFEQLQTRFPEA--- 1005

Query: 308  HPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
             P          +     +    +       G     + + L+     +   IE A    
Sbjct: 1006 EPLNGWMAAPLVDRHGRNLGGLSLT--RSEPGEFSADDEAVLVQLAQMTSVAIENARLFE 1063

Query: 368  TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
             L    +  D          R           L  ++ +  +   +  +      Q  + 
Sbjct: 1064 NLQQNDRRKDEFLATLAHELR--NPLAPIRTGLEVLRVSDNDPETLEEVRGIMERQTQQL 1121

Query: 428  MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
            +       +       K ++    ++L  +     D
Sbjct: 1122 VTLVDDLLDVSRITRGKMELRKCEVRLREVARNAID 1157


>gi|182414849|ref|YP_001819915.1| PAS/PAC sensor hybrid histidine kinase [Opitutus terrae PB90-1]
 gi|177842063|gb|ACB76315.1| PAS/PAC sensor hybrid histidine kinase [Opitutus terrae PB90-1]
          Length = 773

 Score =  294 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 97/633 (15%), Positives = 207/633 (32%), Gaps = 25/633 (3%)

Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254
           A             + +     +       +   +P    +    V      +   +   
Sbjct: 21  ASLLAHVTDAVIATDHQLRVLYLNPAAEREYGVSAPEAVGQPVEVVYRNLWIHPADERQA 80

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
           + +   +      ++  ++D   I +     +           +                
Sbjct: 81  RADLQAVGFWRGENIHVRQDGSQIRVESTISRLRNAE-GEEIGQLAVIRDISEKQREIDE 139

Query: 315 FDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
                       +  P     +   G ++Y N +   +        + + G     + AP
Sbjct: 140 LSRQRGAFMRLAENSPDLIVRFDATGRMWYLNTATERVFGIPR---LHMIGKTMAEVGAP 196

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
                   + +    S          +             + I   +            I
Sbjct: 197 SELCALWQQTLAGVVSTGRQAELELTIPR----SNEQSDFSVICVPEFASDGRVETVLSI 252

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGY---PV 489
             +  D +      E    +L   + A + G+   + + G I   N    ++        
Sbjct: 253 AHDVTDLKRAIEHAENRQSRLNLAVVAANLGVFEWSFKTGGIRLENTVAREILAQLADTT 312

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE-EKLLSLRIIIKKL 548
           E    +     +  +       +L +++      T   +    TK       +    +  
Sbjct: 313 ELPAAQFLDELVHPDDAVAFREHLAQVMVG--LGTFNHLCRLQTKSAGGERWVEFAARCE 370

Query: 549 PFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
                        + DI+E  +    L+ A+  AE  S  K  FLA +SHE+RTPLT  +
Sbjct: 371 RAEGTTDVQLVGFVSDITERIEAAAALARARDTAEAASRAKDRFLATLSHELRTPLTPAL 430

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
             +  +++    PL      +    I  +  L   +++DLLD+++I  GK+++ FEP   
Sbjct: 431 MVAADLEHSPLIPL---ELRQDCATIRTNIELEARLIDDLLDVARIAQGKLHMAFEPCDA 487

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724
            + +  A++  +     K++ +          +  D   ++Q+  NIL NA  F+P GG 
Sbjct: 488 HQVLRRAVATTRADFEAKQLTVDWQLHAEQGHVQGDSIRLQQVFWNILRNAAKFSPKGGA 547

Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
           + + +  ++     L + D G+G+   +L K  + F Q  +  Q R +G GLGL ++  +
Sbjct: 548 VALRSA-SNGAVWRLEIVDRGIGIDAADLAKIFEAFVQASDGAQRRHDGLGLGLAISAFI 606

Query: 785 VDANMGKFYIFS-TPAKGTLIEIIFPLYDTSHP 816
           V  + G+ +  S    +G    +  PL + + P
Sbjct: 607 VREHGGRIWAESGGRGQGATFVVELPLSERAAP 639



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/395 (9%), Positives = 93/395 (23%), Gaps = 31/395 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL--LKRQNTWYGK 146
            D    +  ++    +  G  A + +G  +  V   L I P +       L+    W G+
Sbjct: 34  TDHQLRVLYLNPAAEREYGVSAPEAVGQPVEVVYRNLWIHPADERQARADLQAVGFWRGE 93

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                 +G+ + V   ++   + +   E  G     ++              R    F  
Sbjct: 94  NIHVRQDGSQIRVESTIS--RLRNAEGEEIG--QLAVIRDISEKQREIDELSRQRGAFMR 149

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHL----------RMKNKVSSLTEYYAHKDDVLKT 256
           L E              ++   +    +          +   +V + +E  A     L  
Sbjct: 150 LAENSPDLIVRFDATGRMWYLNTATERVFGIPRLHMIGKTMAEVGAPSELCALWQQTLAG 209

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
                  +E      + +  +        +                ++        A   
Sbjct: 210 VVSTGRQAELELTIPRSNEQSDFSVICVPEFASDGRVETVLSIAHDVTDLKRAIEHAENR 269

Query: 317 EGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLT-KYKSVDDIEIAGGLSTLLDAPKL 375
           +             +  + +  G +   N     +  +     ++  A  L  L   P  
Sbjct: 270 QSRLNLAVVAANLGVFEWSFKTGGIRLENTVAREILAQLADTTELPAAQFLDEL-VHPDD 328

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
           +         +     T      RL T     E    + F    +  +   ++   G   
Sbjct: 329 AVAFREHLAQVMVGLGTFNHL-CRLQTKSAGGER--WVEFAARCERAEGTTDVQLVGFVS 385

Query: 436 EDVDTRI----------NKRKMEIEVMQLCSILEA 460
           +  +                       +  + L  
Sbjct: 386 DITERIEAAAALARARDTAEAASRAKDRFLATLSH 420



 Score = 74.7 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 18/138 (13%), Positives = 46/138 (33%), Gaps = 5/138 (3%)

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
                 S+L   +D +   + +  +L  N A  + +G    + + +P  V          
Sbjct: 16  SARFFASLLAHVTDAVIATDHQLRVLYLNPAAEREYGVSAPEAVGQPVEVVYRNLWIHPA 75

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWK 565
           +          +        +   ++   + +   I +L  +          + DISE +
Sbjct: 76  DERQARADLQAV-GFWRGENIHVRQDGSQIRVESTISRLRNAEGEEIGQLAVIRDISEKQ 134

Query: 566 QEKNKLSHAKKIAEKESS 583
           +E ++LS  +    + + 
Sbjct: 135 REIDELSRQRGAFMRLAE 152



 Score = 39.2 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 18/259 (6%), Positives = 59/259 (22%), Gaps = 22/259 (8%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP--NNHIGDLLKRQNTWYG 145
             DA G +  ++    +  G     MIG  + +V     +       +  ++        
Sbjct: 160 RFDATGRMWYLNTATERVFGIPRLHMIGKTMAEVGAPSELCALWQQTLAGVVSTGRQ-AE 218

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
                P         +    +P ++ +          ++ +     D +   +  + + S
Sbjct: 219 LELTIPRSNEQSDFSVI--CVPEFASDGRVET-----VLSIAHDVTDLKRAIEHAENRQS 271

Query: 206 HL-HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
            L   +   +  V +  +     +      R      + T        + +        +
Sbjct: 272 RLNLAVVAANLGVFEWSFKTGGIRLENTVAREILAQLADTTELPAAQFLDELVHPDDAVA 331

Query: 265 EESSLPEQEDFHT-----------INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
               L +                     +   +      +       + +   +  +   
Sbjct: 332 FREHLAQVMVGLGTFNHLCRLQTKSAGGERWVEFAARCERAEGTTDVQLVGFVSDITERI 391

Query: 314 YFDEGENLTPETVDKCPIP 332
                     +T +     
Sbjct: 392 EAAAALARARDTAEAASRA 410


>gi|281206421|gb|EFA80608.1| histidine kinase [Polysphondylium pallidum PN500]
          Length = 1197

 Score =  294 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 87/366 (23%), Positives = 148/366 (40%), Gaps = 23/366 (6%)

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI---LSLDLRQ 523
           +++  G +L  N       G    +I+  PF                 E     +     
Sbjct: 70  LLDHHGNLLDVNEPALHGGGMIRSNIVGMPFWDCRWWAVSEKTKIDCREAVYSAAQGNFV 129

Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM----HDISEWKQEKNKLSHAKKIAE 579
             E    G +   + +++   +  L   +     +     +I+E KQ +++++       
Sbjct: 130 RYEVDIFGKSAGTETITIDFSLMPLFDDNGKVWLILPEGRNITEKKQAEDEIARKNDELR 189

Query: 580 -------KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
                  +    K+ F A VSHE+RTPLT I   +E +      P  +    +Y   I R
Sbjct: 190 KLYEKIKELDELKTQFFANVSHELRTPLTLITHPTEKLLKD---PTISASSKKYLEVIAR 246

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
           +   +L  VN+LLDISK+E+GKM + +  V +   VS   S  +L A +  +   T   +
Sbjct: 247 NTRGLLKHVNNLLDISKLEAGKMEVQYAMVDVGRTVSLIASCFELLARDNNLDYSTVIPD 306

Query: 693 NIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHT--SNEEVILRV--RDTGVG 747
               + A D   + ++  N++SNA  FTP GG+I +    T   + E+   V   D+G G
Sbjct: 307 GAALMAAIDSDKINRVITNLISNAFKFTPRGGKIRVQVDRTTMPSGELAFEVVVSDSGPG 366

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI-FSTPAKGTLIEI 806
           +  +        F Q+      +  GTGLGL + K  V+ + G   I  S    G +  I
Sbjct: 367 VPEHLHAIIFDRFRQVDGGSTRKHGGTGLGLSIVKEFVELHKGTVSISSSKQGTGAVFTI 426

Query: 807 IFPLYD 812
             P+  
Sbjct: 427 KIPVSP 432



 Score =  258 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 66/277 (23%), Positives = 117/277 (42%), Gaps = 30/277 (10%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           + +    +L   + +  + ++HK +FL  +SHE+RTPL  I+G+S+V++ +         
Sbjct: 659 DLQLLVKQLDQERSLLNQANTHKDEFLMNLSHELRTPLNGILGWSQVLRYEP----DADE 714

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                  I+R       +VNDLLD+S I SGK  +  EP+++ E +  A+  +   A  K
Sbjct: 715 LKHGIETIERCARAQNQLVNDLLDMSLIISGKFQITSEPINISEIIENALESLTFIAKTK 774

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT-PSGGQIIISTTHTSNEEV---- 737
            + +             D   ++Q+  N++SNAI F+  S G + +  + +   +V    
Sbjct: 775 NVKLDVDVKQQHFCARGDSTRLQQVIWNLVSNAIKFSKDSQGAVSVRLSRSDGSDVYGVT 834

Query: 738 ------------------ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
                             ++RV D G G++   L      F Q   S      G GLGL 
Sbjct: 835 GAPADHVKQMMATNKSWALIRVTDNGKGISGEFLPHVFDRFRQADCSSTRHYGGLGLGLS 894

Query: 780 LAKAMVDANMGKFYI--FSTPAKGTLIEIIFPLYDTS 814
           +   +V+ + G           KG    I+ P+   +
Sbjct: 895 IVNNIVELHGG-ISFAYSDGVGKGASFSILLPIEQEN 930


>gi|170700649|ref|ZP_02891646.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ambifaria
           IOP40-10]
 gi|170134421|gb|EDT02752.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ambifaria
           IOP40-10]
          Length = 730

 Score =  294 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 110/574 (19%), Positives = 201/574 (35%), Gaps = 27/574 (4%)

Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
             D+ L +E                     +      ++           + + L   + 
Sbjct: 11  ESDEQLVSEVASFAADALRDGGSAIVIARADRLAAVHERLHTFGAAICDAARDRLFMSSA 70

Query: 309 PSLSAYFDEGENLTPETVDKCPIPF--FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
            +L   F +G+   P    +            G   +A    + L    + D    A  L
Sbjct: 71  QALLDSFMDGDLPDPARFRRSIGTIVEAAVRTGRPVHAFGEMVSLL--CAQDRYAGALRL 128

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
             L D        A+     + +  +   +    H    +R    A +    E       
Sbjct: 129 EALWDELIARYRFALYCGYSHDAFPSAEQSEMFRHVCSLHRRILPAASLRNDENELHLTL 188

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLF 485
            + Q        D    +   E +      +L      IA++   E  I+  N   S L 
Sbjct: 189 ALSQQ-RSRALSDEIRRREDAEQQRN---GVLMHAPLPIALLSGPEHRIVLANHRFSALC 244

Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE--KLLSLRI 543
           G    DI+ +P T  L       +   L          T+ +       +   ++  L  
Sbjct: 245 G--RTDIVDQPLTSVLPGGDTPAIVQALETAREQGCSTTIGEHHDRPEPDGGARVYRLHF 302

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK-------ESSHKSDFLARVSHEI 596
             + L       ++  +++E    + KL  A    ++        +  K  FLA + HE+
Sbjct: 303 NPQPLAEGLGVIVSAVEVTEHVAAREKLVAANAERDRLLGELRDANQAKDQFLAVLGHEL 362

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           R PLT I    E+I+N+      N         I R  + ++ +++DLLD+S+I  GK+ 
Sbjct: 363 RNPLTPISLALELIRNRDGQATPNE-----IAIIQRQLDHMVRLIDDLLDVSRITRGKIT 417

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716
           L  E + L + V  A+ +      ++R  +      +  R   D   + Q+  N+L+NA 
Sbjct: 418 LKKESLRLADIVDRAVEVASPLLEQRRHRLHVDADPDA-RCHGDPVRLSQVVANLLTNAA 476

Query: 717 HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
            +T  GG I +  TH ++   I+ V D G G+    L+   +PF ++    +    G G+
Sbjct: 477 KYTMPGGDITVRATHGADGAAIIEVCDNGAGIPPDRLDSIFEPFYRLDGETKQAHGGLGI 536

Query: 777 GLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFP 809
           GL L +++V+ + G     S  P  G+   I  P
Sbjct: 537 GLALVRSLVNLHGGTVRADSAGPGCGSTFTIALP 570



 Score = 40.0 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 39/361 (10%), Positives = 94/361 (26%), Gaps = 40/361 (11%)

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL-DKKFSHLH 208
               G+ + +        ++ R   F G             +  +AL     D       
Sbjct: 28  LRDGGSAIVIARADRLAAVHERLHTF-GAAICDAARDRLFMSSAQALLDSFMDGDLPDPA 86

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLR----MKNKVSSLTEYYAHKDDVLKTEKYPL--- 261
             ++   ++ +              +      +++ +      A  D+++   ++ L   
Sbjct: 87  RFRRSIGTIVEAAVRTGRPVHAFGEMVSLLCAQDRYAGALRLEALWDELIARYRFALYCG 146

Query: 262 --LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
               +  S+   +   H  +L++            N       LS +   +LS      E
Sbjct: 147 YSHDAFPSAEQSEMFRHVCSLHRRILPAASLRNDENELHLTLALSQQRSRALSDEIRRRE 206

Query: 320 NLTPE---TVDKCPIPFFVYSH--GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
           +   +    +   P+P  + S     +  AN  F  L     + D  +   L      P 
Sbjct: 207 DAEQQRNGVLMHAPLPIALLSGPEHRIVLANHRFSALCGRTDIVDQPLTSVL------PG 260

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE-NSLAMTFIPFEKANQFPENMPQNGI 433
                 ++ +   R               + +       + F P        E +     
Sbjct: 261 GDTPAIVQALETAREQGCSTTIGEHHDRPEPDGGARVYRLHFNPQP----LAEGLGVIVS 316

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
             E  +    + K+     +   +L             G +   N+A  +       ++ 
Sbjct: 317 AVEVTEHVAAREKLVAANAERDRLL-------------GELRDANQAKDQFLAVLGHELR 363

Query: 494 R 494
            
Sbjct: 364 N 364



 Score = 38.1 bits (87), Expect = 7.2,   Method: Composition-based stats.
 Identities = 23/258 (8%), Positives = 65/258 (25%), Gaps = 18/258 (6%)

Query: 82  TVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN 141
            +           +   +       G     ++   L  V           I   L+   
Sbjct: 220 PLPIALLSGPEHRIVLANHRFSALCGRT--DIVDQPLTSVLPGGD---TPAIVQALETAR 274

Query: 142 -----TWYGKTTLWP-IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA 195
                T  G+    P  +G      +     P+               V V         
Sbjct: 275 EQGCSTTIGEHHDRPEPDGGARVYRLHFNPQPLAEGLGVIVSA-----VEVTEHVAAREK 329

Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ-QSPPPHLRMKNKVSSLTEYYAHKDDVL 254
           L     ++   L E++  + + ++    +  + ++P   + +  ++    +  A  +++ 
Sbjct: 330 LVAANAERDRLLGELRDANQAKDQFLAVLGHELRNPLTPISLALELIRNRDGQATPNEIA 389

Query: 255 KTEKYPL-LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
             ++    +      L +        +    +      + + + E    L  +    L  
Sbjct: 390 IIQRQLDHMVRLIDDLLDVSRITRGKITLKKESLRLADIVDRAVEVASPLLEQRRHRLHV 449

Query: 314 YFDEGENLTPETVDKCPI 331
             D       + V    +
Sbjct: 450 DADPDARCHGDPVRLSQV 467


>gi|94266170|ref|ZP_01289881.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
 gi|93453257|gb|EAT03709.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
          Length = 787

 Score =  294 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 69/491 (14%), Positives = 173/491 (35%), Gaps = 26/491 (5%)

Query: 327 DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
           +K  +  +V +H  +   N + L        ++                  +        
Sbjct: 304 EKAALLDYVMAHQRMTKVNQAMLDQYG-AREEEFIGLTVNDLFAHDLDHGRHIWKGLFDR 362

Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
            R              +    +             ++    +   G++ +  + +  +++
Sbjct: 363 GRWHGETHEQRLDGTPVTIEGDYICL--------YDEQDRIIGHFGVQSDITERKKAEQE 414

Query: 447 MEIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL-EQN 504
           +      L ++L       +   N +G++   NRA   ++GY   D + +     +    
Sbjct: 415 LLSSEEHLRTLLNDVPSMAVQGYNMDGVVRYWNRASEVVYGYSETDAIGRNLLDLIIPPE 474

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR---IIIKKLPFSSCYSLTMHDI 561
               +   + ++                 K+   +S+    + + +            D+
Sbjct: 475 MREDVRQAIKQVAETGWTIP-AAELSLMRKDGSRVSVFSSHVNVCQPGREPMMFCIDFDL 533

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           +E K+ +  L+       + ++    F   VSH++R PL  +  + + +  +      + 
Sbjct: 534 TERKRIELALNQQSAELARSNAELEQFAYVVSHDLRQPLRMVNSYMQ-LLERALDDKLDD 592

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
              E   +       +  ++  LL+ S++  G+      P++  +AV EA+  +     E
Sbjct: 593 ETREMMGFAVGGAQRMDQMLVSLLEYSRV--GRKGEPMVPLASRQAVDEALDFLAPETKE 650

Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG--QIIISTTHTSNEEVIL 739
               ++ S   + P I+A      ++  N++ NA+ +       ++ IS T         
Sbjct: 651 AGAKVKVS--GDWPEIVASRDEFTRLWQNLIGNALKYRDPDRVCEVEISVTPEDGGW-RF 707

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-P 798
            V D G+G+   + ++  K F ++    + + EGTG+GL +A+ +V+ + G+ ++ S   
Sbjct: 708 SVADNGIGIDPQQFDRLFKVFQRLH--TRDKYEGTGIGLAVARKIVERHGGRIWVESEGA 765

Query: 799 AKGTLIEIIFP 809
            +G       P
Sbjct: 766 GQGCRFIFTLP 776



 Score = 55.0 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 45/125 (36%), Gaps = 5/125 (4%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150
           AH  + ++++ +    G    + IG+ + D+     +D   HI   L  +  W+G+T   
Sbjct: 314 AHQRMTKVNQAMLDQYGAREEEFIGLTVNDLFAH-DLDHGRHIWKGLFDRGRWHGETHEQ 372

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
            ++GT   V I+   + +Y       G   FG+                 ++    L   
Sbjct: 373 RLDGTP--VTIEGDYICLYDEQDRIIGH--FGVQSDITERKKAEQELLSSEEHLRTLLND 428

Query: 211 KKGHS 215
               +
Sbjct: 429 VPSMA 433



 Score = 39.2 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 22/223 (9%), Positives = 64/223 (28%), Gaps = 15/223 (6%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNT-WYGKTT 148
            G ++  +       G      IG  L D+     +  +    I  + +   T    + +
Sbjct: 440 DGVVRYWNRASEVVYGYSETDAIGRNLLDLIIPPEMREDVRQAIKQVAETGWTIPAAELS 499

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           L   +G+   V +  + + +    RE      F I                         
Sbjct: 500 LMRKDGS--RVSVFSSHVNVCQPGREPM---MFCIDFDLTERKRIELAL------NQQSA 548

Query: 209 EIKKGHSSVEKEKYDIFSQ-QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
           E+ + ++ +E+  Y +    + P   +    ++          D+  +   + +  ++  
Sbjct: 549 ELARSNAELEQFAYVVSHDLRQPLRMVNSYMQLLERALDDKLDDETREMMGFAVGGAQRM 608

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310
                       + +  +       +    E+ ++L+     +
Sbjct: 609 DQMLVSLLEYSRVGRKGEPMVPLASRQAVDEALDFLAPETKEA 651


>gi|37520808|ref|NP_924185.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
           7421]
 gi|35211803|dbj|BAC89180.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
           7421]
          Length = 713

 Score =  294 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 112/711 (15%), Positives = 228/711 (32%), Gaps = 102/711 (14%)

Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKG--HSSVEKEKYDIFSQQSPPPHLRMKNKVSSL 243
             R         ++L +       ++       +      +   ++    +        +
Sbjct: 14  HRRALEQSELRYRQLVELSPDAIFVQCEGKVVFINGAGGRLLGAETSAQIVGKP-----V 68

Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL----------- 292
            E     D      +  LL +  +    +E F  ++      +     +           
Sbjct: 69  LELIHPCDREAVRRRMELLQAGTAVPLLEERFLRLDGTVVEVEVLASAMTYQGKPAAHVL 128

Query: 293 -----QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY-SHGNLFYANP 346
                +    +              A  ++ E      ++  P   +   + G   Y + 
Sbjct: 129 ARDIGERKRAQHEREQLLERRRQALATAEQSEERYRLLIEAIPQLVWTTTADGRCDYLSQ 188

Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
            ++  T     + +    G+  L          A    +   +DR       RL      
Sbjct: 189 QWVHYTGIPEAEQL----GMGWLAAVHPEDRPRASACWLAAVADRAIYDLEYRLRA---A 241

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME---IEVMQLCSILEATSD 463
             +            +     +   G   +  D +  + + E       Q  + L+  S+
Sbjct: 242 DGSYRWFKTRGRPVRDAGGRIVRWFGTCTDMQDQKTAQEERERLIAHQQQYAARLKKLSE 301

Query: 464 GIAIINREGIILSTNR----AVSKLFGYPV-------EDILRKPFTVFLEQNTPSVMNHY 512
               IN    +           S + G          +    +           +    +
Sbjct: 302 ASLAINLALSVEEVVEVITFQASAIIGTHQAVTSMTIDADWGRAINAVYLSEKYAAWRDF 361

Query: 513 L---------TEILSLDLRQTLEKITLGSTKEEKLL------------SLRIIIKKLPFS 551
                       +   +    L +  L +    +               L   +      
Sbjct: 362 RGRPNGAAIYARVCDTNRPMRLNQAQLDAHPHWRTFGNADTEHPPLRGWLAAPLVARDGR 421

Query: 552 SCYSLTMHD------------------------ISEWKQEKNK------LSHAKKIAEKE 581
           +   + + D                        I   +  + +         A++ AE  
Sbjct: 422 NIGLIQLSDKCEEEFTAEDEAIVVQLAQMASVAIENARLFEAEQTARALAEQARREAEAA 481

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
           +  K +FLA +SHE+RTPL  IIGF+++++ +      + R       I+R+G L   ++
Sbjct: 482 NRAKDEFLAVLSHELRTPLNPIIGFAQLLRRKSGLSAADYRA---LETIERNGRLQAQLI 538

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701
           +D+LD+S+I SGKM +    V L   V+ AI  V+  A  K I +     +    + AD 
Sbjct: 539 DDVLDVSRIISGKMRVELRAVDLLPVVAAAIEAVRSPAELKGICLSGRLDDGATAV-ADP 597

Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761
             ++Q+  N+L+NAI FTP GG+++I      +  +++RV D+G+G++   L    + F 
Sbjct: 598 TRMQQVVWNLLTNAIKFTPEGGRVVIDL-CRGDRTLLIRVSDSGIGISPDFLPYVFERFR 656

Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFPLY 811
           Q   +   +  G GLGL + + +V+ + G     S    +GT   +  PLY
Sbjct: 657 QADGTSTRKHSGLGLGLAIVRHIVELHGGAVSAQSDGVGQGTTFCVELPLY 707



 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 29/298 (9%), Positives = 77/298 (25%), Gaps = 19/298 (6%)

Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIE 361
            + +          ++ E    + V+  P   FV   G + + N +   L   ++   I 
Sbjct: 5   LVDNGTDGGHRRALEQSELRYRQLVELSPDAIFVQCEGKVVFINGAGGRLLGAETSAQIV 64

Query: 362 IAGGLSTLLDAPKLSDNNAIK-----------PVMLYRSDRTCIAASARLHTIQWNRENS 410
               L  +    + +    ++                R D T +        + +  + +
Sbjct: 65  GKPVLELIHPCDREAVRRRMELLQAGTAVPLLEERFLRLDGTVVEVEVLASAMTYQGKPA 124

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470
             +      +  +      Q          R      E    +   ++EA    +     
Sbjct: 125 AHVLARDIGERKRAQHEREQL-----LERRRQALATAEQSEERYRLLIEAIPQLVWTTTA 179

Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530
           +G     ++      G P  + L   +   +        +      ++      LE    
Sbjct: 180 DGRCDYLSQQWVHYTGIPEAEQLGMGWLAAVHPEDRPRASACWLAAVADRAIYDLEYRLR 239

Query: 531 GSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEK-ESSHK 585
            +    +    R    +        +  T  D+ + K  + +        ++  +  K
Sbjct: 240 AADGSYRWFKTRGRPVRDAGGRIVRWFGTCTDMQDQKTAQEERERLIAHQQQYAARLK 297



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/413 (7%), Positives = 84/413 (20%), Gaps = 44/413 (10%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQNTW 143
             W   A G    +S++     G    + +GM              +      +  +  +
Sbjct: 173 LVWTTTADGRCDYLSQQWVHYTGIPEAEQLGMGWLAAVHPEDRPRASACWLAAVADRAIY 232

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN----RVDNDPRALGKR 199
             +  L   +G+  Y        P+          R FG             +   L   
Sbjct: 233 DLEYRLRAADGS--YRWFKTRGRPVRDAGGRIV--RWFGTCTDMQDQKTAQEERERLIAH 288

Query: 200 LDKKFSHLHEIKKGHSSVEKE-------------KYDIFSQQSPPPHLRMKNKVSSLTEY 246
             +  + L ++ +   ++                   I         + +          
Sbjct: 289 QQQYAARLKKLSEASLAINLALSVEEVVEVITFQASAIIGTHQAVTSMTIDADWGRAINA 348

Query: 247 YAHKDDVLKTEKYPLLTSEES--------------------SLPEQEDFHTINLNQYTKK 286
               +       +    +  +                    + P    F   +      +
Sbjct: 349 VYLSEKYAAWRDFRGRPNGAAIYARVCDTNRPMRLNQAQLDAHPHWRTFGNADTEHPPLR 408

Query: 287 QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANP 346
            +              L   +      +  E E +  +      +               
Sbjct: 409 GWLAAPLVARDGRNIGLIQLSDKCEEEFTAEDEAIVVQLAQMASVAIENARLFEAEQTAR 468

Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD--NNAIKPVMLYRSDRTCIAASARLHTIQ 404
           +     + ++            +L     +          +L R      A    L TI+
Sbjct: 469 ALAEQARREAEAANRAKDEFLAVLSHELRTPLNPIIGFAQLLRRKSGLSAADYRALETIE 528

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
            N      +     + +      M       + +       +      +L  I
Sbjct: 529 RNGRLQAQLIDDVLDVSRIISGKMRVELRAVDLLPVVAAAIEAVRSPAELKGI 581



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/247 (9%), Positives = 65/247 (26%), Gaps = 14/247 (5%)

Query: 92  HGYLKEISEELPKTIGNYAFK-MIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY-GKTTL 149
            G +  I+    + +G      ++G  + ++      +      +LL+        +   
Sbjct: 41  EGKVVFINGAGGRLLGAETSAQIVGKPVLELIHPCDREAVRRRMELLQAGTAVPLLEERF 100

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFG---IVHVNRV-----DNDPRALGKRLD 201
             ++GT + V +  +A+    +       R  G        R           A  ++ +
Sbjct: 101 LRLDGTVVEVEVLASAMTYQGKPAAHVLARDIGERKRAQHEREQLLERRRQALATAEQSE 160

Query: 202 KKFSHLHEIKKGHSSVEKEKYD---IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
           +++  L E                 +  Q      +    ++        H +D  +   
Sbjct: 161 ERYRLLIEAIPQLVWTTTADGRCDYLSQQWVHYTGIPEAEQLGMGWLAAVHPEDRPRASA 220

Query: 259 YPLLTSEESSLPEQE-DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
             L    + ++ + E      + +    K     +++       +              E
Sbjct: 221 CWLAAVADRAIYDLEYRLRAADGSYRWFKTRGRPVRDAGGRIVRWFGTCTDMQDQKTAQE 280

Query: 318 GENLTPE 324
                  
Sbjct: 281 ERERLIA 287


>gi|115361278|ref|YP_778415.1| histidine kinase [Burkholderia ambifaria AMMD]
 gi|115286606|gb|ABI92081.1| histidine kinase [Burkholderia ambifaria AMMD]
          Length = 742

 Score =  294 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 105/566 (18%), Positives = 190/566 (33%), Gaps = 25/566 (4%)

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
             L SE +S          +     +      +          +       +     +  
Sbjct: 26  EQLVSEVASFAADALRDGGSAIVIARADRLAAVHERLDALGAAIGPGARDRIFMSSAQAL 85

Query: 320 NLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
             +    D      F  S G +  A         +   + + +         A +L    
Sbjct: 86  LDSFMDGDLPDPARFRRSIGPIVEAAIRAGR-PVHAFGEMVSLLCAQDRYAGALRLEALW 144

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
                    S     +  A     Q      +         A     +  +  +      
Sbjct: 145 DELIARYRFSLYCGYSHDAFPSAEQSEMFRHVCSLHRRILPAASLRNDENELHLTLALSQ 204

Query: 440 TRINK-----RKMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDIL 493
            R        R+ E    Q   +L      IA++   E  I+  N   S L G    DI+
Sbjct: 205 QRSRALSDEIRRREDAEQQRNGVLMHAPLPIALLSGPEHRIVLANHRFSALCG--RTDIV 262

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE--KLLSLRIIIKKLPFS 551
            +P T  L       +   L          T+ +       +   ++  L    + L   
Sbjct: 263 DQPLTSVLPGGDTPAIVQALETAREQGCSTTIGEHHDRPEPDGAARVYRLHFNPQPLAEG 322

Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEK-------ESSHKSDFLARVSHEIRTPLTAII 604
               ++  +++E    + KL  A    ++        +  K  FLA + HE+R PLT I 
Sbjct: 323 LGVIVSAVEVTEHVAAREKLVAANAERDRLLGELRDANQAKDQFLAVLGHELRNPLTPIS 382

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
              E+I+N+      N         I R  + ++ +++DLLD+S+I  GK+ L  E + L
Sbjct: 383 LALELIRNRDGQATPNE-----IAIIQRQLDHMVRLIDDLLDVSRITRGKITLKKESLRL 437

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724
            + V  A+ +      ++R  +      +  R   D   + Q+  N+L+NA  +T  GG 
Sbjct: 438 ADIVDRAVEVASPLLEQRRHRLHVDADPDA-RCHGDPVRLSQVVANLLTNAAKYTMPGGD 496

Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
           I +  TH  +   I+ V D G G+    L+   +PF ++    +    G G+GL L +++
Sbjct: 497 ITVRATHGVDGAAIIEVCDNGAGIPPDRLDSIFEPFYRLDGETKQAHGGLGIGLALVRSL 556

Query: 785 VDANMGKFYIFST-PAKGTLIEIIFP 809
           V+ + G     S  P  G+   I  P
Sbjct: 557 VNLHGGTVRADSAGPGCGSTFTIALP 582



 Score = 38.5 bits (88), Expect = 5.1,   Method: Composition-based stats.
 Identities = 38/360 (10%), Positives = 93/360 (25%), Gaps = 38/360 (10%)

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
               G+ + +        ++ R        G G      + +    L   +D        
Sbjct: 40  LRDGGSAIVIARADRLAAVHERLDALGAAIGPGARDRIFMSSAQALLDSFMDGDLPDPAR 99

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLR----MKNKVSSLTEYYAHKDDVLKTEKYPL---- 261
            ++    + +              +      +++ +      A  D+++   ++ L    
Sbjct: 100 FRRSIGPIVEAAIRAGRPVHAFGEMVSLLCAQDRYAGALRLEALWDELIARYRFSLYCGY 159

Query: 262 -LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
              +  S+   +   H  +L++            N       LS +   +LS      E+
Sbjct: 160 SHDAFPSAEQSEMFRHVCSLHRRILPAASLRNDENELHLTLALSQQRSRALSDEIRRRED 219

Query: 321 LTPE---TVDKCPIPFFVYSH--GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
              +    +   P+P  + S     +  AN  F  L     + D  +   L      P  
Sbjct: 220 AEQQRNGVLMHAPLPIALLSGPEHRIVLANHRFSALCGRTDIVDQPLTSVL------PGG 273

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNR-ENSLAMTFIPFEKANQFPENMPQNGIE 434
                ++ +   R               + +       + F P        E +      
Sbjct: 274 DTPAIVQALETAREQGCSTTIGEHHDRPEPDGAARVYRLHFNPQP----LAEGLGVIVSA 329

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
            E  +    + K+     +   +L             G +   N+A  +       ++  
Sbjct: 330 VEVTEHVAAREKLVAANAERDRLL-------------GELRDANQAKDQFLAVLGHELRN 376


>gi|197103684|ref|YP_002129061.1| tyrosine kinase DivL [Phenylobacterium zucineum HLK1]
 gi|196477104|gb|ACG76632.1| tyrosine kinase DivL [Phenylobacterium zucineum HLK1]
          Length = 771

 Score =  294 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 107/717 (14%), Positives = 233/717 (32%), Gaps = 54/717 (7%)

Query: 103 PKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPID 162
            + +G  A +     + +       D    +  L +R      +     ++G    V ++
Sbjct: 85  AEALGLAAGEP--QAVLNALMRADPDHARRLRALFERGEACAFE-----VQGEAGVVTVE 137

Query: 163 LAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKY 222
                        +  R  G++            G     +F+     +   + +     
Sbjct: 138 ------GRAAGALAWLRLSGML--------GEDAGLPTAPRFAAFLHTRSCPAWIAAADG 183

Query: 223 DIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQ 282
                 +          +       A  D    +         +    E   +   +  +
Sbjct: 184 SPVWVNAAWLRAVGAETLDEAARRGAAFDRGADSVASEAANLGQRR--EAVRWLAFDGRR 241

Query: 283 YTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NL 341
                    L+      +          L            +T+++      ++  G  L
Sbjct: 242 RAFHIVAQPLEGGGVAVWT-DDVTEVEELREQLKRNIEAHDQTLNRIDDAVAIFGEGKRL 300

Query: 342 FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401
            + N +F  L   +    +E       +LD  +                       A L 
Sbjct: 301 IFHNTAFAELWGIEP-AWLEERPTHGEVLDRLRQRRRLPETADYAKWKA-------AELD 352

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL----CSI 457
             +        +  +P  +  +        G           + K++ +   L     + 
Sbjct: 353 RYEKLGAEPDDLWSLPDGRTLRVVRQPHPMGGMLVLFADITGELKLKAQYNALIQVQQAT 412

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
           L+  SD +A+   +G +   N +  + +G   + +    F   ++   P + +      L
Sbjct: 413 LDKLSDAVAVFGSDGRLRLHNESFERFWGIGHDQLEAADFEAVVQLCVPKLHDLGFWREL 472

Query: 518 SLDLRQTLEKIT-----LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572
              +                T +++++  R             +   D+++ ++ ++ L+
Sbjct: 473 KGRVGDPDPGARTPMTGEARTSDDRIVEYRSRPLP---DGATLIAFTDVTDARRLESALA 529

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
             +    +    K DF+  VS+E+RTPLT IIG+SE++  +  G     R   +A  +  
Sbjct: 530 DREAALSEAERLKRDFVGNVSYELRTPLTTIIGYSELL--EHSGDALPERARAHAASVKS 587

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
           +   +   ++D+LD+++I++ +M L    V++ E +          A   R+ +     +
Sbjct: 588 AATQLARSIDDVLDMAQIDADEMALDLADVNVAELMIGVAGRWLKPAEAARVSLVIERPD 647

Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752
           +I  I  D + + QI  +++ NA+  TP+GG I +     +  E+ L+V DTG G+  + 
Sbjct: 648 DIGLIRGDAKRLAQILDHLVENALTQTPAGGTITL-AARKALGEIQLQVSDTGRGIPFHV 706

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
                  F            G GLGL L KA+ + + G   + S P  G       P
Sbjct: 707 QAHIFDRF------IGRERGGPGLGLALVKALTELHGGWVALESEPGAGARFTCHLP 757


>gi|119944685|ref|YP_942365.1| aerobic respiration control sensor protein ArcB [Psychromonas
           ingrahamii 37]
 gi|119863289|gb|ABM02766.1| PAS/PAC sensor hybrid histidine kinase [Psychromonas ingrahamii 37]
          Length = 753

 Score =  294 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 74/419 (17%), Positives = 174/419 (41%), Gaps = 21/419 (5%)

Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465
                     +   +  +  E +  + +E E ++ + +++K+      L S L  + D +
Sbjct: 83  EEARMHLDNTVASLREVRQKERIKTHELEKEIIERKASQQKLVEAASLLKSFLNTSPDLV 142

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
              + +   +S N+A+  L G   + ++         ++           +      Q  
Sbjct: 143 FHRDLKSRFVSCNKAMEMLTGKTEKQLISLTPFDIFPEDYAHQAVTRDQNVKKQKKEQIH 202

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
           E        ++    +R +      +          DI+E K+ +  +    +       
Sbjct: 203 EHWLHFPNGKKAYFEVRTLPLFNSEAVCIGIIGFGRDITERKKHQESIDKNIRE------ 256

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
            K+DF++ +SHE+RTPL  I+G S ++ +++         +++   I  S   + +I +D
Sbjct: 257 -KTDFISSISHELRTPLNGIVGLSRMLLDEQLTS----EQMKHLKTIHISAISLGNIFSD 311

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLR 702
           ++++ K++  ++ L    +++ + +S+  SL  +   +K +++      + P I+  D  
Sbjct: 312 IINLDKLDRNRLKLATNKINMLDFISDLKSLSFIQTEQKGLVLNFEQRGHFPDIIETDDT 371

Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDTGVGMTNYELEKAMK 758
            ++Q+  N++SNA+ FT  G  I I            E+   V D+G+G+   +L+K   
Sbjct: 372 RLRQVLWNLISNAVKFTQKG-TITIRCVCHQLNQNQVELCFEVEDSGIGIPEDQLDKIFA 430

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
            + Q+  +      GTG+GL +   +  A  G   + S   +G++ ++   +   +  H
Sbjct: 431 MYYQVEGNT--FATGTGIGLAVTSKIAQAMGGVISVKSKLGEGSMFKLTLTVNCPAKEH 487


>gi|301064961|ref|ZP_07205315.1| PAS domain S-box protein [delta proteobacterium NaphS2]
 gi|300440944|gb|EFK05355.1| PAS domain S-box protein [delta proteobacterium NaphS2]
          Length = 701

 Score =  294 bits (753), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 99/686 (14%), Positives = 227/686 (33%), Gaps = 64/686 (9%)

Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEK----------YD 223
           E    R    +  + V        + L K  +   + K    S  +              
Sbjct: 31  EIRVAREAAEITASLVVKQFEETERVLQKLQNANAQRKAVLDSATRIAIIATNMKGTISV 90

Query: 224 IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFH------- 276
             +        R +  +   T      +  L+  +  +  +    +   E F        
Sbjct: 91  FNTGAENLLQYRAEEVIEKATPEIFLLESELEQHRESIKLATGRDVKGHEVFLEYARQGR 150

Query: 277 ---------TINLNQYTKKQYFGTLQNNSKESFEYLSHRNH----PSLSAYFDEGENLTP 323
                      +  ++        L++     + +L                 E E    
Sbjct: 151 KEQQEWTYIRKDGTRFPAVLSISALRDPEGVIYGFLCIAMDVTEKKRSEKALAESEANYR 210

Query: 324 ETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKS-VDDIEIAGGLSTLLDAPKLSDNNAI 381
             +D  P   F  Y+ G+L   +     +T Y+  + D         +L+          
Sbjct: 211 FLIDNIPNVVFRGYADGSLDLYDDKIEAMTGYQKKLFDSRKLQWFDLILEED--RPYARQ 268

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
           K +   ++D++ I    R + ++      + +        +         G   +  + +
Sbjct: 269 KFIDALKTDKSYI----REYRVRKKTGEIIWIEACSKIVCDADGNIDFITGSFLDVSERK 324

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILRKPFTVF 500
             +  +     +  S+  +  + I +++RE   IL  + +  + +GY  ++++ + F   
Sbjct: 325 RAENALHESEQKYRSLFISGPNPIFVLDRETLTILDASPSAEETYGYYKDELVGRNFREL 384

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE-KLLSLRIIIKKLPFSSCYSLTMH 559
                       +      +     ++I       +   + ++             L   
Sbjct: 385 GTFEYEDESLSLMETKSWSESCVFSQRIKHFRQGGKPFYVEVKACPTTYLGRPAIILAAS 444

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN--QRFGP 617
           DI+E  ++  +L  A K+         +  A ++HE+  PL AI   S+ +K   ++  P
Sbjct: 445 DITEIIEKDAQLFQASKMTT-----LGEMSAGIAHELNQPLNAIKIGSDFLKKQIEKNRP 499

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
           + +    +    +    N   +I+  L +  +    K +   E + L++ + + + ++  
Sbjct: 500 IKDNELHQVVAAVSAQVNRASEIIQSLREFGR----KPDFRKEKIDLNQTIKDVMKIIGQ 555

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT------PSGGQ---IIIS 728
             + + I +      ++P ILA+   ++Q+  N+++NA          P   +   I IS
Sbjct: 556 QLSLQNINVVYDLNESVPTILANKNRLEQVIFNLVTNARDAIENRTALPEDSKENIIAIS 615

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
           T       + L + DTG G+    ++K  +PF          G+G GLGL +   ++   
Sbjct: 616 TWSEQRTHLNLTISDTGTGIPEENVQKIFEPFYTTK----EVGKGMGLGLSITYGIIRDF 671

Query: 789 MGKFYIFSTPAKGTLIEIIFPLYDTS 814
            G   + S P  G+   + FPL   +
Sbjct: 672 GGTINVESRPEGGSSFHLRFPLTKNA 697



 Score = 64.7 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 21/176 (11%), Positives = 54/176 (30%), Gaps = 18/176 (10%)

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS-DGIAIINREG 472
                 +  +    +  + +  +  +T    +K++    Q  ++L++ +   I   N +G
Sbjct: 27  ILRNEIRVAREAAEITASLVVKQFEETERVLQKLQNANAQRKAVLDSATRIAIIATNMKG 86

Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE------ 526
            I   N     L  Y  E+++ K         +    +    ++ +    +  E      
Sbjct: 87  TISVFNTGAENLLQYRAEEVIEKATPEIFLLESELEQHRESIKLATGRDVKGHEVFLEYA 146

Query: 527 -------KITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKL 571
                  +      K+       + I  L         +     D++E K+ +  L
Sbjct: 147 RQGRKEQQEWTYIRKDGTRFPAVLSISALRDPEGVIYGFLCIAMDVTEKKRSEKAL 202


>gi|119963101|ref|YP_946860.1| signal transduction histidine kinase domain-containing protein
           [Arthrobacter aurescens TC1]
 gi|119949960|gb|ABM08871.1| putative signal transduction histidine kinase domains protein
           [Arthrobacter aurescens TC1]
          Length = 541

 Score =  294 bits (753), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 85/408 (20%), Positives = 166/408 (40%), Gaps = 28/408 (6%)

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468
             L +                Q  +E +D   +        +   L +++E    G+  +
Sbjct: 154 PILILGIGVSVSVLTLSMVRQQRALELKDEALKEALDVSTKQERLLNTVMETLPLGVVAV 213

Query: 469 NREGIILSTNRAVSK--LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL---DLRQ 523
           + +G  +  NR   +      P ++       + + ++  +         +       R 
Sbjct: 214 DGDGHDILMNRRQRQTHALATPPDNDDPNESQLLIFESDRTTPLAVDRRPVRRAVLGERF 273

Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKE 581
           T + + LGS  +++  +             +   +   D+++                  
Sbjct: 274 TDQLVWLGSGADQRAFTASARPMVDDAGKFAGSVVVFSDVTDLVN--------------A 319

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
            + K DF+A VSHE RTPLT+I+G+ E+I +       + R  +  + + R+   +L +V
Sbjct: 320 LAAKDDFVANVSHEFRTPLTSILGYVELILDDPDA--LDARARKQLDIVRRNAERLLTLV 377

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701
           +DLL +    SG++ +    V + E V  +++  +  A +  I +       +     D 
Sbjct: 378 SDLLVV---RSGQIVIQPHAVDVAELVRGSVNSAEPRAAKAGIRLSMDIPEAL-EAHVDS 433

Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761
             + Q+  N++SNAI ++P GG + +       + V  RV DTG+GM   E  +A   F 
Sbjct: 434 SRIAQVLDNLVSNAIKYSPDGGNVEV-AAWEDQDFVFCRVTDTGMGMNEEEQAEAFTKFF 492

Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +    +     G GLGLP++KA+V+A+ G   + S P +GT   +  P
Sbjct: 493 RAGGVRNSTIPGVGLGLPISKAIVEAHGGTIMVASEPGQGTTFTVKIP 540


>gi|186475908|ref|YP_001857378.1| PAS/PAC sensor signal transduction histidine kinase [Burkholderia
           phymatum STM815]
 gi|184192367|gb|ACC70332.1| PAS/PAC sensor signal transduction histidine kinase [Burkholderia
           phymatum STM815]
          Length = 502

 Score =  294 bits (753), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 77/520 (14%), Positives = 172/520 (33%), Gaps = 54/520 (10%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIE------ 361
                       L  + V+  P         G +   N     L  Y   + +       
Sbjct: 2   EPYRQLSSLTHELFRQVVEAAPNAMVMADREGLVVLVNVQAEKLFGYPRNELVGNSVDML 61

Query: 362 --------IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
                              P+       + +   R D T +     L+ +       +  
Sbjct: 62  VPERMRRAHPEFRRMFYGDPRSRPMGTGRDLFALRKDGTEVPVEIGLNPVTTTEGIFVLA 121

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
             +   +  +  E   Q                          ++EA  + + ++ ++G 
Sbjct: 122 AIVDITERRRLEERFRQ--------------------------VVEAAPNAMVMVGQDGK 155

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLG 531
           I+  N     LFGY  E +  K     + +             L     + +   +   G
Sbjct: 156 IVLVNAQTENLFGYNREQLFGKSIETLVPERFRRGHEVSRNAYLHDLKPRPMGTGRDLYG 215

Query: 532 STKEEKLLSLRI--IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
             ++     + I     +    +     + DI+E K+ +++L    +   + +     F 
Sbjct: 216 RRRDGSEFPVEIGLNPVRTSNENFVLAAIVDITERKRAEHELMRRTEELARSNQDLEQFA 275

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
              SH+++ PL A+ G  ++++ +  G L + R  E+  +       +  +++DLL  S+
Sbjct: 276 YVASHDLQEPLRAVAGPLQLLQRRYQGQL-DARAEEFITHAVDGATRMQKLIDDLLSYSR 334

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709
           +                A+ +A+  + +   E    I       +P ++A    +  +  
Sbjct: 335 VGRSGAVQQLTAC--AAALDQALKSLSVVLQESGAQITRD---ALPCVMAIPTQLALLFQ 389

Query: 710 NILSNAIHFTPSGGQIIIST-THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
           N++ NA+ F      + +        +  ++ V+D G+G+     ++    F ++ +  +
Sbjct: 390 NLVGNAVKFRQVDRPVRVDIGARREGDSWVISVKDNGIGIDPQYFDRIFMIFQRLHS--R 447

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
               GTG+GL L K +V+ + G  +I S P  GT +    
Sbjct: 448 ADYPGTGIGLALCKRIVEQHGGSIWIESQPGAGTTVFFTL 487



 Score = 41.6 bits (96), Expect = 0.51,   Method: Composition-based stats.
 Identities = 29/344 (8%), Positives = 85/344 (24%), Gaps = 27/344 (7%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL----KRQNTWYG 145
           D  G +  ++ +  K  G    +++G  +  +        +     +     + +    G
Sbjct: 30  DREGLVVLVNVQAEKLFGYPRNELVGNSVDMLVPERMRRAHPEFRRMFYGDPRSRPMGTG 89

Query: 146 KTTL-WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
           +       +GT   VP+++   P+ +    F       I    R++   R + +      
Sbjct: 90  RDLFALRKDGT--EVPVEIGLNPVTTTEGIFVLAAIVDITERRRLEERFRQVVEAAPNAM 147

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
             + +  K      + +      +       ++  V    E +    +V +      L  
Sbjct: 148 VMVGQDGKIVLVNAQTENLFGYNREQLFGKSIETLV---PERFRRGHEVSRNAYLHDLKP 204

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
                         + +++  +     ++ +       L+     +     +       E
Sbjct: 205 RPMGTGRDLYGRRRDGSEFPVEIGLNPVRTS--NENFVLAAIVDITERKRAEHELMRRTE 262

Query: 325 TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
            + +                   F  +  +   + +    G   LL        +A    
Sbjct: 263 ELARSNQDL------------EQFAYVASHDLQEPLRAVAGPLQLLQRRYQGQLDARAEE 310

Query: 385 MLYRSDRTCIAASA---RLHTIQWNRENSLAMTFIPFEKANQFP 425
            +  +             L +      +           A    
Sbjct: 311 FITHAVDGATRMQKLIDDLLSYSRVGRSGAVQQLTACAAALDQA 354



 Score = 40.4 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 25/265 (9%), Positives = 68/265 (25%), Gaps = 32/265 (12%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL----LKRQNTWY 144
           +   G +  ++ +     G    ++ G  +  +        +    +     LK +    
Sbjct: 150 VGQDGKIVLVNAQTENLFGYNREQLFGKSIETLVPERFRRGHEVSRNAYLHDLKPRPMGT 209

Query: 145 GKTTL-WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
           G+       +G+    P+++   P+ + N  F       IV +         L +R ++ 
Sbjct: 210 GRDLYGRRRDGS--EFPVEIGLNPVRTSNENFVLA---AIVDITERKRAEHELMRRTEEL 264

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
                ++++                         + +       A    +L+      L 
Sbjct: 265 ARSNQDLEQ-------------------FAYVASHDLQEPLRAVAGPLQLLQRRYQGQLD 305

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS---AYFDEGEN 320
           +               + +        +    S    +  +       +         E+
Sbjct: 306 ARAEEFITHAVDGATRMQKLIDDLLSYSRVGRSGAVQQLTACAAALDQALKSLSVVLQES 365

Query: 321 LTPETVDKCPIPFFVYSHGNLFYAN 345
               T D  P    + +   L + N
Sbjct: 366 GAQITRDALPCVMAIPTQLALLFQN 390


>gi|12483718|gb|AAG53733.1|AF178425_3 KinC [Lactococcus lactis subsp. cremoris MG1363]
 gi|2182992|gb|AAC45385.1| histidine kinase [Lactococcus lactis subsp. cremoris MG1363]
          Length = 475

 Score =  294 bits (753), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 76/386 (19%), Positives = 151/386 (39%), Gaps = 42/386 (10%)

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
           D    +  +E +  QL SIL    DG+   +R G I+  N++         E ++ K   
Sbjct: 100 DIVRTQNNLENQRNQLDSILAYMVDGVIATDRRGNIIMANKSALHYLNTSNELLMEKNIV 159

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS--- 555
             L+          L +          E          + +SL I        S +    
Sbjct: 160 DVLKIADQYNFYDLLEKEP--------EITIETHDAGNESISLHIKFALFRRESGFISGI 211

Query: 556 -LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
              +HD+++  + + +              +  F++ VSHE+RTPLT++  + E +++  
Sbjct: 212 IAVLHDMTKQDKAERE--------------RRLFVSNVSHELRTPLTSVKAYLEALEDGA 257

Query: 615 FGPLGNPRYIEYAN--YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS--- 669
                      +          +    +++DLL +S+++  ++ L+ E ++L   +    
Sbjct: 258 ID--DKETASSFIRCFTNRNQSD--DSVISDLLTLSRMDQDRIVLNKEIINLIAFLDYQI 313

Query: 670 ----EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725
               + +             +   +++    +  D   + Q+  NI+ NAI ++P GG I
Sbjct: 314 NRLDQILETESNDLISSNFTLVRKYSDKPIWVEIDTDKIAQVIDNIIGNAIKYSPKGGTI 373

Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN-SQQIRGEGTGLGLPLAKAM 784
            I       + V++ ++D G+G+   +L K    F ++ N S+  +  GTGLGL +   +
Sbjct: 374 TIYVETRERD-VLISIKDEGMGIPKSDLLKIFDRFYRVDNASRNSKVGGTGLGLSIVHDI 432

Query: 785 VDANMGKFYIFST-PAKGTLIEIIFP 809
           V  + G  +  S    KGT      P
Sbjct: 433 VKIHGGTIFASSEGEGKGTTFSFTLP 458


>gi|74310969|ref|YP_309388.1| phosphate regulon sensor protein [Shigella sonnei Ss046]
 gi|73854446|gb|AAZ87153.1| positive and negative sensor protein for pho regulon [Shigella
           sonnei Ss046]
 gi|323164190|gb|EFZ49997.1| phosphate regulon sensor kinase PhoR [Shigella sonnei 53G]
          Length = 431

 Score =  294 bits (753), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 72/427 (16%), Positives = 149/427 (34%), Gaps = 37/427 (8%)

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             +L       I     L  + W     L +         +        G+    +  + 
Sbjct: 33  WFLLASVTGLLIWHFWNLLRLSW----WLWVDRSMTPPPGRGSWEPLLYGLHQMQLRNKK 88

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            +R++   + +  S  E+  D + +   E  I   N    ++ G    +   +     L 
Sbjct: 89  RRRELGNLIKRFRSGAESLPDAVVLTTEESGIFWCNGLAQQILGLRWPEDNGQNILNLLR 148

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
               +               +   +         + L +R++           +   D++
Sbjct: 149 YPEFTQYL----------KTRDFSRPLNLVLNTGRHLEIRVMPYTHKQ---LLMVARDVT 195

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  Q +                + +F A VSHE+RTPLT + G+ E++  Q        +
Sbjct: 196 QMHQLEG--------------ARRNFFANVSHELRTPLTVLQGYLEMMDEQPLEGAVREK 241

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                + +      +  +V  LL +SKIE+    L  E V +   +       Q  + +K
Sbjct: 242 A---LHTMREQTQRMEGLVKQLLTLSKIEAAPTQLLNEKVDVPMMLRVVEREAQTLSQKK 298

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           +        N + ++  +   ++    N++ NA++ TP G  I +      +      V 
Sbjct: 299 Q-TFTFEIDNGL-KVSGNEDQLRSAISNLVYNAVNHTPEGTHITVRWQRVPHG-AEFSVE 355

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G G+    + +  + F ++  ++  +  G+GLGL + K  V+ +  +  I ST  KGT
Sbjct: 356 DNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHAVNHHESRLNIESTVGKGT 415

Query: 803 LIEIIFP 809
               + P
Sbjct: 416 RFSFVIP 422


>gi|288934293|ref|YP_003438352.1| integral membrane sensor hybrid histidine kinase [Klebsiella
           variicola At-22]
 gi|288889022|gb|ADC57340.1| integral membrane sensor hybrid histidine kinase [Klebsiella
           variicola At-22]
          Length = 946

 Score =  294 bits (753), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 90/370 (24%), Positives = 161/370 (43%), Gaps = 29/370 (7%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            +++E        I+ +   GI I+   +G  + +N            +  ++       
Sbjct: 347 AQRLEEHEQFNRKIVASAPVGICILRTVDGTNILSNELAHNYLNMLTHEDRQR------- 399

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
                     LT+I+       ++      T     L +  +  +    +     + D+S
Sbjct: 400 ----------LTQIICGQQVNFVD----VLTSNHTNLQISFVHSRYRNENVAICVLVDVS 445

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
              + +  L    + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R
Sbjct: 446 ARVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKALPKGVDR 504

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                  ++ S +L+L I++D+LD SKIES ++ +     S  E ++   +        K
Sbjct: 505 ---LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHISANYLPLVVRK 561

Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
           ++ +      ++P  +  D   ++Q+  N+LSNAI FT +G  II+     + + + + V
Sbjct: 562 QLGLYCFIEPDVPEQMSGDPMRLQQVISNLLSNAIKFTDTG-CIILHVQC-AGDYLQISV 619

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
           RDTG G+   E+ +   PF Q+    Q   +GTGLGL + + ++    G   + + P  G
Sbjct: 620 RDTGEGIPAKEVLRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIAVETEPGMG 679

Query: 802 TLIEIIFPLY 811
           +   I  PLY
Sbjct: 680 SRFTIRIPLY 689


>gi|239905137|ref|YP_002951876.1| putative sensor histidine kinase [Desulfovibrio magneticus RS-1]
 gi|239795001|dbj|BAH73990.1| putative sensor histidine kinase [Desulfovibrio magneticus RS-1]
          Length = 868

 Score =  294 bits (753), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 105/769 (13%), Positives = 233/769 (30%), Gaps = 75/769 (9%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS-DILHIDPNNHIGDLLKRQNTWY 144
            + +D    ++ ++       G  A + +G  L  +    +    +      L       
Sbjct: 130 IFAVDRDFIVRYVNRAFVSLHGGQAGEYLGRHLAHIIGAAIFSRFHAAALAALDSGTPNT 189

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            + TL        Y+   +  L    R+    G   +G++      N  +       +++
Sbjct: 190 EEVTLVHGGREREYLATRIPLL----RDGLPLGV--WGLLTDITDRNMAQRELDASRRRY 243

Query: 205 SHLHEIKKGHSSVEKEKYD--IFSQQSPPPHLRMKNKVSS--LTEYYAHKDDVLKTEKYP 260
             L E +                +             +      +     +      +  
Sbjct: 244 RALVEDQTELVVRLDPALRRTFVNANLAALLGAPVEALIGGYFGDRLPEAETQALRRRLL 303

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH----PSLSAYFD 316
            LT   S+   +      +  +         + + S    EY +          +     
Sbjct: 304 ELTPRASTCELEHAIVLPSGEERRLHWSVRAIFDESGRIGEYQALGRDVSIVRRMEQELS 363

Query: 317 EGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
           + E    +  +      F +   G +   NP+   +  Y S + +    G   L    + 
Sbjct: 364 QSEAKYRDIFEHSAEGIFQFEPSGAVVACNPALARILGYASPEAVLAEPG--DLFTRIQA 421

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
              + ++ +                  +      +  ++       +         G   
Sbjct: 422 RQEDRLEFLRQLARHNRVYDFEM---QVVRRDGRAAWLSVNARAVLDADGRLARVEGAAR 478

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
           +  D +      E E M L S ++ +++G+ I++R+  +   N A +++       + R 
Sbjct: 479 DITDRKRA----EGERMLLVSAVDQSAEGLVIVSRDFRLEYANPAFAQIVAGGQGMLGRD 534

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555
                L       +   L       L          +    +      +I  +  ++   
Sbjct: 535 ALDGLLAPFLTESVRKML------GLGLRWSGRLRLTRPGGEEAVAEALISPVRDTAGQV 588

Query: 556 L----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
           +     + D++     + +L  A+K+            A V+H+    LT I+  SE++ 
Sbjct: 589 VNHILLVRDMTYELDLERRLRQAEKL-----EAIGVLAAGVAHDFNNILTPILLNSELVL 643

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
           +    P+ +P   +  + +  +     D+V  LL  S+    +  +    + L   V E 
Sbjct: 644 SDL--PVLHP-LRKPLSDVVLASERARDLVRQLLAFSR----QGEISVSDLPLAPLVKET 696

Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
             LV+  A    + ++         + AD   + Q+ +N+  N +     GG++ +    
Sbjct: 697 AKLVRGMAPA-GVELKLEIGGEPYCVRADPAQMHQVLVNLCLNGVQSMVGGGRLEVGLAP 755

Query: 732 TSNE---------------------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
                                     V L V DTG GM     E+  +PF          
Sbjct: 756 VDGPPRPEGGGIAAGAPLASLAAGPYVRLWVEDTGHGMAPEVAERVFEPFFTTKKP---- 811

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819
           G+GTG+GL +   +V +  G   + +   KG+  E+  P    + P  C
Sbjct: 812 GQGTGMGLAVVHGIVKSCGGAVLLTTAQGKGSRFEVYLP--RAAAPDAC 858



 Score =  115 bits (289), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 50/483 (10%), Positives = 129/483 (26%), Gaps = 38/483 (7%)

Query: 176 SGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG--HSSVEKEKYDIFSQQSPPPH 233
            G  G   V    V      L   L++  + +  + +      V +    +   Q+    
Sbjct: 99  DGRDGVVCVFEAGVWTVQEGLLPVLEQAPNSIFAVDRDFIVRYVNRAFVSLHGGQAGEYL 158

Query: 234 LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293
            R    +     +       L         +EE +L            +    +    L 
Sbjct: 159 GRHLAHIIGAAIFSRFHAAALAALDSGTPNTEEVTLVHGGREREYLATRIPLLRDGLPL- 217

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETV-DKCPIPFFVYSHGNLFYANPSFLLLT 352
                        +        D         V D+  +   +       + N +   L 
Sbjct: 218 ---GVWGLLTDITDRNMAQRELDASRRRYRALVEDQTELVVRLDPALRRTFVNANLAALL 274

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL-HTIQWNRENSL 411
               V+ +        L            + +     + T  A++  L H I        
Sbjct: 275 G-APVEALIGGYFGDRL-------PEAETQALRRRLLELTPRASTCELEHAIVLPSGEER 326

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471
            + +      ++         +  +    R  ++++     +   I E +++GI      
Sbjct: 327 RLHWSVRAIFDESGRIGEYQALGRDVSIVRRMEQELSQSEAKYRDIFEHSAEGIFQFEPS 386

Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLE--QNTPSVMNHYLTEILSLDLRQTLEKIT 529
           G +++ N A++++ GY   + +           Q        +L ++   +  +  +   
Sbjct: 387 GAVVACNPALARILGYASPEAVLAEPGDLFTRIQARQEDRLEFLRQLARHN--RVYDFEM 444

Query: 530 LGSTKEEKLLSLRIIIKKLPFSSCYSLTM----HDISEWKQEKNKLSHAKKIAEKESSHK 585
               ++ +   L +  + +  +      +     DI++ K+ + +    + +        
Sbjct: 445 QVVRRDGRAAWLSVNARAVLDADGRLARVEGAARDITDRKRAEGE----RMLLVSAVDQS 500

Query: 586 SDFLARVSHEIR----TP-----LTAIIGFS-EVIKNQRFGPLGNPRYIEYANYIDRSGN 635
           ++ L  VS + R     P     +    G       +    P       +      R   
Sbjct: 501 AEGLVIVSRDFRLEYANPAFAQIVAGGQGMLGRDALDGLLAPFLTESVRKMLGLGLRWSG 560

Query: 636 LVL 638
            + 
Sbjct: 561 RLR 563


>gi|290508496|ref|ZP_06547867.1| two-component system, NarL family, capsular synthesis sensor
           histidine kinase RcsC [Klebsiella sp. 1_1_55]
 gi|289777890|gb|EFD85887.1| two-component system, NarL family, capsular synthesis sensor
           histidine kinase RcsC [Klebsiella sp. 1_1_55]
          Length = 946

 Score =  294 bits (753), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 90/370 (24%), Positives = 161/370 (43%), Gaps = 29/370 (7%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            +++E        I+ +   GI I+   +G  + +N            +  ++       
Sbjct: 347 AQRLEEHEQFNRKIVASAPVGICILRTVDGTNILSNELAHNYLNMLTHEDRQR------- 399

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
                     LT+I+       ++      T     L +  +  +    +     + D+S
Sbjct: 400 ----------LTQIICGQQVNFVD----VLTSNHTNLQISFVHSRYRNENVAICVLVDVS 445

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
              + +  L    + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R
Sbjct: 446 ARVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKALPKGVDR 504

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                  ++ S +L+L I++D+LD SKIES ++ +     S  E ++   +        K
Sbjct: 505 ---LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHISANYLPLVVRK 561

Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
           ++ +      ++P  +  D   ++Q+  N+LSNAI FT +G  II+     + + + + V
Sbjct: 562 QLGLYCFIEPDVPEQMSGDPMRLQQVISNLLSNAIKFTDTG-CIILHVQC-AGDYLQISV 619

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
           RDTG G+   E+ +   PF Q+    Q   +GTGLGL + + ++    G   + + P  G
Sbjct: 620 RDTGEGIPAKEVLRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIAVETEPGMG 679

Query: 802 TLIEIIFPLY 811
           +   I  PLY
Sbjct: 680 SRFTIRIPLY 689


>gi|328541656|ref|YP_004301765.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [polymorphum gilvum SL003B-26A1]
 gi|326411408|gb|ADZ68471.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Polymorphum gilvum SL003B-26A1]
          Length = 773

 Score =  294 bits (753), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 98/486 (20%), Positives = 186/486 (38%), Gaps = 17/486 (3%)

Query: 334 FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393
              + G         L   ++   D  + AG    LL A  +         ++       
Sbjct: 16  LRDAGGTAGDVEEGDLRSPQHAGADQADGAGPGWVLLHAAVVGAAIGPLAALVLVGGPPP 75

Query: 394 IAASARLHTIQWNRENSLAMTF--IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV 451
              +A +            +T        +          G+            +++   
Sbjct: 76  ARLAAVVLAFLAGGLAVWRLTADDRSRLLSAAAGRAAEIAGLRRRLEALEDTAWELKESD 135

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
            +  SIL+A  D +   +  G+++  N A  + F       + +P  +       +  + 
Sbjct: 136 ERQASILQALGDIVIRRDAAGLVIYANAAALETFPPAHMPEIGRPLMLPRAAPREAGADA 195

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS-LTMHDISEWKQEKNK 570
              +    DLR                  L + ++     +      + D+++ +  +  
Sbjct: 196 PRDDFAFGDLR------LDTVHGPRWFSRLDVTVRDDATETPVVQTVLRDVTDRRLIEED 249

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           L  A++ AE  +  KS FLA VSHEIRTPL  I+G + ++ + R  P        Y   +
Sbjct: 250 LLAARQNAESANEAKSRFLATVSHEIRTPLNGILGMAALLSDTRLTP----EQAAYIKAL 305

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
           + SG  +L ++++LLD S+ E+G++ +   P +L   V     L+   A+ K + I    
Sbjct: 306 ESSGETLLMLIDELLDFSRAEAGRLVVQPAPAALAPLVENVAELLAPRAHAKGLEIAVRL 365

Query: 691 ANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEE--VILRVRDTGV 746
             ++P+ +  D   ++QI  N+  N I FT  GG  + +      +    + + VRDTG+
Sbjct: 366 HPHLPQTVTVDASRLRQILFNLAGNGIKFTDRGGVAVEVDGRPAPDGGTLLDIAVRDTGI 425

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G    + E+    F Q+ +    R  GTGLGL +A+ +V    G     S    G +  +
Sbjct: 426 GFRPEDAERLFGEFEQVDHGPARRYGGTGLGLAIAQRLVTLMGGTIAATSAEGAGAVFRV 485

Query: 807 IFPLYD 812
           + P+ +
Sbjct: 486 VLPVPE 491



 Score = 38.9 bits (89), Expect = 3.3,   Method: Composition-based stats.
 Identities = 33/390 (8%), Positives = 85/390 (21%), Gaps = 32/390 (8%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
             DA G +   +    +T        IG  L                     ++ +    
Sbjct: 151 RRDAAGLVIYANAAALETFPPAHMPEIGRPLM------LPRAAPREAGADAPRDDFAFGD 204

Query: 148 TLWP-IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                + G   +  +D+    +     E    +   ++                 +    
Sbjct: 205 LRLDTVHGPRWFSRLDVT---VRDDATETPVVQ--TVLRDVTDRRLIEEDLLAARQNAES 259

Query: 207 LHEIKKGHSSVEKEKYD-----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
            +E K    +    +       I    +     R+  + ++  +      + L      L
Sbjct: 260 ANEAKSRFLATVSHEIRTPLNGILGMAALLSDTRLTPEQAAYIKALESSGETLLMLIDEL 319

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
           L    +                  +     L   +      ++ R HP L        + 
Sbjct: 320 LDFSRAEAGRLVVQPAPAALAPLVENVAELLAPRAHAKGLEIAVRLHPHLPQTVTVDASR 379

Query: 322 TPETVDKCP---------IPFFVYSHGNLFYANPSFLLL------TKYKSVDDIEIAGGL 366
             + +                 V   G       + L +        ++  D   + G  
Sbjct: 380 LRQILFNLAGNGIKFTDRGGVAVEVDGRPAPDGGTLLDIAVRDTGIGFRPEDAERLFGEF 439

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
             +   P          + + +   T +  +    + +        +  +P         
Sbjct: 440 EQVDHGPARRYGGTGLGLAIAQRLVTLMGGTIAATSAEGAGAVFRVVLPVPEPIRGVEVA 499

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
            +      P  V       +  +   +L  
Sbjct: 500 GLRTGAARPRVVVVSAGVVEGRLLCDRLAQ 529


>gi|317489211|ref|ZP_07947728.1| hsp90-like protein [Eggerthella sp. 1_3_56FAA]
 gi|325832247|ref|ZP_08165246.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Eggerthella sp. HGA1]
 gi|316911612|gb|EFV33204.1| hsp90-like protein [Eggerthella sp. 1_3_56FAA]
 gi|325486083|gb|EGC88537.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Eggerthella sp. HGA1]
          Length = 554

 Score =  294 bits (753), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 84/374 (22%), Positives = 158/374 (42%), Gaps = 12/374 (3%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREG-IILSTNRAVSKLFGYPVEDILR--KPFTVF 500
           +  +E        ++    D   + + +   +   +  V KL G  VE +    +  +  
Sbjct: 33  ELAIESREQLFSMLVRNADDIYVMFSPDAYEVEYVSPNVEKLLGVSVEAVKNNIRALSDS 92

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
               +       +  +   +  Q   +     T E +     +  + +     Y L + D
Sbjct: 93  AADPSSDPRIDDIASLEEGECLQVFRERIQARTGERRWYQETLYRESIKGVDKYVLVLSD 152

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
            +  ++    L  A  IA   +  KS FLA +SH+IRTP+ AI+G +++ +        +
Sbjct: 153 RTNEQKGSLMLEQALDIARSSNEAKSQFLANMSHDIRTPINAIVGMTKIARE---SGEAS 209

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
            +     + I  S   +L+++ND+LD+S+IESG+M L      +D+ V    ++++  A 
Sbjct: 210 EKIAGCLDAITASSRHLLELINDVLDMSRIESGQMELQERRFDIDDVVGGVEAIIRPQAQ 269

Query: 681 EKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN----- 734
            K   +R   +         D   + QI LN+ SNA+ +T  GG I +     +      
Sbjct: 270 AKSQELRIDCSKMKHKAFSGDELRISQILLNLASNAVKYTQEGGTIALVVQELAKTRPSY 329

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
             V   + D G+GM+   +E+   PF +       R +GTGLG+ + KA++DA  G   +
Sbjct: 330 ASVAFTITDNGMGMSPEFVERIFDPFERSEEVSIARIQGTGLGMSITKALIDAMGGIVEV 389

Query: 795 FSTPAKGTLIEIIF 808
            S   +G+   +  
Sbjct: 390 DSEKGRGSSFRVTL 403


>gi|17229180|ref|NP_485728.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120]
 gi|17135508|dbj|BAB78054.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120]
          Length = 676

 Score =  294 bits (753), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 80/259 (30%), Positives = 132/259 (50%), Gaps = 12/259 (4%)

Query: 561 ISEWKQEKNKLSHAKKIAEK--------ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
           +++ KQ   +    + +A +         S  +S+FLA +SHE+ TPLT +IG S  +  
Sbjct: 414 LTQEKQTLEQRVIERTMALRDALLAAEAASRLRSEFLATISHELLTPLTYVIGMSSTLLR 473

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
              G L   R  +Y   I  SG  +LD++ND+LD+S+IE+GK  L+    SL +     I
Sbjct: 474 WPLGELS-QRQRDYLQTIHDSGEHLLDMINDILDLSQIEAGKTVLNIAEFSLVKIAENTI 532

Query: 673 SLVQLYANEKRILIRTSF--ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
             +   A  +++ ++          R  AD   ++QI  N+L+NAI FTP GG + +   
Sbjct: 533 ESLLEKALSEQVNLKLDLQIDPRRDRFTADAARIEQILWNLLTNAIKFTPEGGNVTLRIW 592

Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
              +  +  +V DTG+G+   +L    + F Q+    + R EGTGLGL L K +V+ + G
Sbjct: 593 VEEDTSI-FQVEDTGIGIPEEQLPLLFEKFQQLDTPYRRRYEGTGLGLALTKQLVELHRG 651

Query: 791 KFYIFSTPAKGTLIEIIFP 809
           +  + ST   G++  +  P
Sbjct: 652 RIEVESTVGIGSIFTVWIP 670


>gi|254410345|ref|ZP_05024124.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
 gi|196182551|gb|EDX77536.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
          Length = 526

 Score =  294 bits (753), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 81/397 (20%), Positives = 170/397 (42%), Gaps = 32/397 (8%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT-- 498
              ++++      L +IL++T D +   +  G I   N     + G+   + + KP T  
Sbjct: 124 HQTQQQLIEREEFLSTILDSTHDAVVATDATGGITYMNPIAQTITGWSSTEAMDKPVTEV 183

Query: 499 -VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL--RIIIKKLPFSS--C 553
               ++ T +V+ + +  +L  +         L   ++     +   + + +        
Sbjct: 184 VQIFDEATNTVVENPVIRLLRGEPVPNQGHNRLLIARDGTKTPIVDHVSLMRPNDDDIKG 243

Query: 554 YSLTMHDISEWKQE--------------------KNKLSHAKKIAEKESSHKSDFLARVS 593
             L + +ISE +Q                     + ++  A    ++ S  KS  +A +S
Sbjct: 244 AVLVVCNISERRQAQALELERVKLATEVAERQKAEAEIRKALTTEQELSELKSRVVAMIS 303

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HE RTPL  I+  +E +  +    L   +   Y + I      +  +V ++L  +K ++G
Sbjct: 304 HEYRTPLAVILTSTE-LLKRYSTQLSQEKQQTYLDRIQMGVKQMAQLVEEVLTFNKAQAG 362

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713
           ++  + EP+++++   + +   +L   + R  +  +   +      D + ++ I  N+LS
Sbjct: 363 ELQFNPEPLNMEDFCLQLVDEQRLMVGD-RYTLTYNPQLSSGEAELDKQMLRHIVTNLLS 421

Query: 714 NAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
           NAI ++  G  + +S     +  +I++V+D G+G+   E  +   PF +  N   I   G
Sbjct: 422 NAIKYSAKGTTVSLSLRREDD-TLIIQVQDQGIGIPESEQPRLFSPFFRASNVSTIA--G 478

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           TG+GL + K  VD + G+  I S   KGT + +  P+
Sbjct: 479 TGMGLSIVKNCVDLHQGQIAIASEVGKGTTVTVTLPV 515



 Score = 43.1 bits (100), Expect = 0.21,   Method: Composition-based stats.
 Identities = 28/210 (13%), Positives = 64/210 (30%), Gaps = 12/210 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP----NNHIGDLLKRQNTWY 144
            DA G +  ++       G  + + +   + +V  I          N +  LL+ +    
Sbjct: 151 TDATGGITYMNPIAQTITGWSSTEAMDKPVTEVVQIFDEATNTVVENPVIRLLRGEPVPN 210

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
                  I       PI      +   + +  G     +V         +AL     K  
Sbjct: 211 QGHNRLLIARDGTKTPIVDHVSLMRPNDDDIKGA--VLVVCNISERRQAQALELERVKLA 268

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
           + + E +K  + + K                +K++V ++  +       +      LL  
Sbjct: 269 TEVAERQKAEAEIRKALTTEQELSE------LKSRVVAMISHEYRTPLAVILTSTELLKR 322

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQN 294
             + L +++    ++  Q   KQ    ++ 
Sbjct: 323 YSTQLSQEKQQTYLDRIQMGVKQMAQLVEE 352


>gi|313147366|ref|ZP_07809559.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
 gi|313136133|gb|EFR53493.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
          Length = 955

 Score =  294 bits (753), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 119/701 (16%), Positives = 243/701 (34%), Gaps = 39/701 (5%)

Query: 121 VSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPI-YSRNREFSGFR 179
           +      +    + D+L   +  Y       +  T+ +    L   P     + +   + 
Sbjct: 124 IHPEDWKEAEPILLDMLNGCDCLYEMDIRIRLSDTSEWQYCKLNCSPYERGVDGKVVKYV 183

Query: 180 GFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK 239
           GF      R +N      K L +   +   +      VE +   +F  +           
Sbjct: 184 GF------RKNNTELQRRKLLQENILNSIPLPIHIKDVEDDFRYVFCNEESMRMFGTYEG 237

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
            +        + + ++     + T+ +     +     I  +  +               
Sbjct: 238 ETVSDILDREQAERMQKTDLEVFTTGKPYFGVE---RIILKDGRSYDTIVRKNIIYDGSK 294

Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDD 359
              L+ R    L    +    +   +++      + Y       +           ++D 
Sbjct: 295 RLLLNIRWDQKLQNDLERRAKVLSISMEVMNAYTWFYEPSKQRVSFGEGFDKIGRNALDI 354

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
                        P            + + D        R   ++ N       T    E
Sbjct: 355 NTFEKFAEC--VHPDDRRQFIGTMDAVLKQDSGEWDIEYRA-DLRGNGNYEWWQTRGVLE 411

Query: 420 KANQFPENMPQNGIEPEDVDT-RINKRKMEIEVMQL-------CSILEATSDGIAIINRE 471
            +                +++ +  +  +     +L         +L  T+ G+A I ++
Sbjct: 412 TSILNDTPYQYVSGMTISIESYKQTELTLLKNKEKLKRLIRQNELVLNNTNSGLAYITKD 471

Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
            ++   N +V             +         T    N  L ++L+    + ++     
Sbjct: 472 YVVQWENVSVCSSSLSFEAYKRGECCYKSAHNRTSPCENCVLGKVLASRQMEKIKF---- 527

Query: 532 STKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
            ++  +++ +                + + DI++ ++   +L  AK +AE+    KS FL
Sbjct: 528 HSENNRIVEVLATPVFGEGEEIDGIVIRVDDITDRERMIEELRQAKLLAEQSDKLKSAFL 587

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
           A +SHEIRTPL AI+GFS+++ N            EY   I+ +  L+L ++ND+LD+SK
Sbjct: 588 ANMSHEIRTPLNAIVGFSDLLMN----SEEQADREEYMQIINTNNELLLKLINDILDLSK 643

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709
           +ESG + L +E   L E  +   S ++       + + T    ++  +  D   V Q+  
Sbjct: 644 LESGSVELKYEDFDLAEYFNGMASSMKQRMVNPEVRLVTINPYDVCLVKLDRNRVAQVMT 703

Query: 710 NILSNAIHFTPSGGQIIISTTHT-SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
           N ++NAI +TP G    I   +   +  + L V+DTG+G+   +  K    F ++     
Sbjct: 704 NYVTNAIKYTPKGS---IEMGYEVMDTGIRLYVKDTGIGIPEEKKNKVFHRFEKLD---- 756

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
              +GTGLGL + KA+ ++  G     S   +G+L   I P
Sbjct: 757 EFAQGTGLGLSICKAITESMGGSVGFESKYHEGSLFWAIIP 797


>gi|255009587|ref|ZP_05281713.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
          Length = 1023

 Score =  294 bits (753), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 119/701 (16%), Positives = 243/701 (34%), Gaps = 39/701 (5%)

Query: 121 VSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPI-YSRNREFSGFR 179
           +      +    + D+L   +  Y       +  T+ +    L   P     + +   + 
Sbjct: 192 IHPEDWKEAEPILLDMLNGCDCLYEMDIRIRLSDTSEWQYCKLNCSPYERGVDGKVVKYV 251

Query: 180 GFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK 239
           GF      R +N      K L +   +   +      VE +   +F  +           
Sbjct: 252 GF------RKNNTELQRRKLLQENILNSIPLPIHIKDVEDDFRYVFCNEESMRMFGTYEG 305

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
            +        + + ++     + T+ +     +     I  +  +               
Sbjct: 306 ETVSDILDREQAERMQKTDLEVFTTGKPYFGVE---RIILKDGRSYDTIVRKNIIYDGSK 362

Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDD 359
              L+ R    L    +    +   +++      + Y       +           ++D 
Sbjct: 363 RLLLNIRWDQKLQNDLERRAKVLSISMEVMNAYTWFYEPSKQRVSFGEGFDKIGRNALDI 422

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
                        P            + + D        R   ++ N       T    E
Sbjct: 423 NTFEKFAEC--VHPDDRRQFIGTMDAVLKQDSGEWDIEYRA-DLRGNGNYEWWQTRGVLE 479

Query: 420 KANQFPENMPQNGIEPEDVDT-RINKRKMEIEVMQL-------CSILEATSDGIAIINRE 471
            +                +++ +  +  +     +L         +L  T+ G+A I ++
Sbjct: 480 TSILNDTPYQYVSGMTISIESYKQTELTLLKNKEKLKRLIRQNELVLNNTNSGLAYITKD 539

Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
            ++   N +V             +         T    N  L ++L+    + ++     
Sbjct: 540 YVVQWENVSVCSSSLSFEAYKRGECCYKSAHNRTSPCENCVLGKVLASRQMEKIKF---- 595

Query: 532 STKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
            ++  +++ +                + + DI++ ++   +L  AK +AE+    KS FL
Sbjct: 596 HSENNRIVEVLATPVFGEGEEIDGIVIRVDDITDRERMIEELRQAKLLAEQSDKLKSAFL 655

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
           A +SHEIRTPL AI+GFS+++ N            EY   I+ +  L+L ++ND+LD+SK
Sbjct: 656 ANMSHEIRTPLNAIVGFSDLLMN----SEEQADREEYMQIINTNNELLLKLINDILDLSK 711

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709
           +ESG + L +E   L E  +   S ++       + + T    ++  +  D   V Q+  
Sbjct: 712 LESGSVELKYEDFDLAEYFNGMASSMKQRMVNPEVRLVTINPYDVCLVKLDRNRVAQVMT 771

Query: 710 NILSNAIHFTPSGGQIIISTTHT-SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
           N ++NAI +TP G    I   +   +  + L V+DTG+G+   +  K    F ++     
Sbjct: 772 NYVTNAIKYTPKGS---IEMGYEVMDTGIRLYVKDTGIGIPEEKKNKVFHRFEKLD---- 824

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
              +GTGLGL + KA+ ++  G     S   +G+L   I P
Sbjct: 825 EFAQGTGLGLSICKAITESMGGSVGFESKYHEGSLFWAIIP 865



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 52/525 (9%), Positives = 127/525 (24%), Gaps = 49/525 (9%)

Query: 90  DAHGYLKEISEELPKTIG-NYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           D  G L EI+    K +G      M+G+ + +     + +  + +   L+        T 
Sbjct: 30  DCEGRLIEINSVGLKMMGVKDKQDMLGINIFE-----NPNVPDEMKSRLRAGEN-IRFTV 83

Query: 149 LWPIEGTNLYVPIDLAALPIY---------SRNREFSGFRGFGIVHVNRVDNDPRALGKR 199
            +  E    Y P  L+ +  +           N+E   F    I            + ++
Sbjct: 84  KYDFELAKFYYPTTLSGIRYFEITVSVVRDDENKEIDKF--LFIAQDVTETVRTEEILRQ 141

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL----RMKNKVSSLTEYYAHKDDVLK 255
             +K + L          E +           P           +    ++   +D    
Sbjct: 142 SKQK-TALAMQAADVVLWEFDVRTHLFYAENEPLNNCDPTQPLTIEDYKKHIHPEDWKEA 200

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
                 + +    L E +    ++     +               + + +      +   
Sbjct: 201 EPILLDMLNGCDCLYEMDIRIRLSDTSEWQYCKLNCSPYERGVDGKVVKYVGFRKNNTEL 260

Query: 316 DEGENLTPETVDKCPIPFFV---YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
              + L    ++  P+P  +          + N   + +      + +      S +LD 
Sbjct: 261 QRRKLLQENILNSIPLPIHIKDVEDDFRYVFCNEESMRMFGTYEGETV------SDILDR 314

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
            +          +                 I  +  +                 +  +  
Sbjct: 315 EQAERMQKTDLEVFTTGK----PYFGVERIILKDGRSY------DTIVRKNIIYDGSKRL 364

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
           +     D ++    +E     L   +E  +            +S      K+    ++  
Sbjct: 365 LLNIRWDQKLQN-DLERRAKVLSISMEVMNAYTWFYEPSKQRVSFGEGFDKIGRNALDIN 423

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS------LRIIIK 546
             + F   +  +        +  +L  D  +   +                   L   I 
Sbjct: 424 TFEKFAECVHPDDRRQFIGTMDAVLKQDSGEWDIEYRADLRGNGNYEWWQTRGVLETSIL 483

Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
                   S     I  +KQ +  L   K+  ++        L  
Sbjct: 484 NDTPYQYVSGMTISIESYKQTELTLLKNKEKLKRLIRQNELVLNN 528



 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/139 (12%), Positives = 44/139 (31%), Gaps = 11/139 (7%)

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRKPFTVFLEQNTPSVMNHYL 513
            +I E    G+ + + EG ++  N    K+ G    +D+L          N P  M   L
Sbjct: 16  QTIYENLPVGMELYDCEGRLIEINSVGLKMMGVKDKQDMLGINIFE--NPNVPDEMKSRL 73

Query: 514 TEILSLDLRQTLEKIT-----LGSTKEEKLLSLRIIIKKLPFS---SCYSLTMHDISEWK 565
               ++      +          +    +   + + + +   +     +     D++E  
Sbjct: 74  RAGENIRFTVKYDFELAKFYYPTTLSGIRYFEITVSVVRDDENKEIDKFLFIAQDVTETV 133

Query: 566 QEKNKLSHAKKIAEKESSH 584
           + +  L  +K+        
Sbjct: 134 RTEEILRQSKQKTALAMQA 152


>gi|229190728|ref|ZP_04317723.1| hypothetical protein bcere0002_23950 [Bacillus cereus ATCC 10876]
 gi|228592753|gb|EEK50577.1| hypothetical protein bcere0002_23950 [Bacillus cereus ATCC 10876]
          Length = 590

 Score =  294 bits (753), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 88/501 (17%), Positives = 177/501 (35%), Gaps = 41/501 (8%)

Query: 314 YFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                E      +   P+    +  +G+    N    ++T Y + + I     L  L   
Sbjct: 102 LLSRKEEELHTILQNMPVMVDALDYNGDFVLWNRECEIVTGYTAEEIIGNPNALQLLYPD 161

Query: 373 PKLSDNNAIKPVM----LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
                    K +         +      +  + TI W+                      
Sbjct: 162 YNYRHQIQKKFLTCGKNFRDWEMHLTCKNGEVKTIMWSN-----------ISEQFPVTGY 210

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
               +  +    +  + +++ +  +L  I +A  D   +   +G I+         F  P
Sbjct: 211 SYWAVGVDITHLKAIEEQLKQQTSELELIFKALPDLCFLTEDDGTIIDYKAGSPTKFYVP 270

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            E  + K F   L  +        + ++        +E           +         L
Sbjct: 271 AEAFMGKKFYEVLPSSVAQQFQEAINQVKEKGTNVIVEYPLTL---NGSIDFFEARCLPL 327

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                  + + DI+E K+ +  L+ +  +A           A V+HE+R PLT I GF +
Sbjct: 328 LHDK-IMIIVRDITERKKTEELLNKSDTLA-----AIGQLAAGVAHEVRNPLTVIKGFIQ 381

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
                    +      +Y + +      +  I+ + L I+K +     ++ E  ++ +  
Sbjct: 382 ------LFQINKEDQEKYFDLMLSEIERIEAILQEFLSIAKTD----EINTEKKNIYQIF 431

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
              +SL+   A    I +     +    I      +KQ+ +NIL N+I   P+GG+I I 
Sbjct: 432 KNVVSLMNTKAIMTNIQVELFTDDKDIIIECSENQLKQVFINILQNSIEAMPNGGEISIH 491

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
               +++ VI+ V D G+G+    +++  +PF         + +GTG+GL L+  +++++
Sbjct: 492 IKEINDDGVIIHVIDEGIGIPEERIKRLGEPFY------STKEKGTGIGLMLSYKIIESH 545

Query: 789 MGKFYIFSTPAKGTLIEIIFP 809
            G   I S    GT + I  P
Sbjct: 546 QGTISIMSEVGVGTTVTIYLP 566


>gi|206580985|ref|YP_002237365.1| sensor kinase protein RcsC [Klebsiella pneumoniae 342]
 gi|206570043|gb|ACI11819.1| sensor kinase protein RcsC [Klebsiella pneumoniae 342]
          Length = 946

 Score =  294 bits (753), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 90/370 (24%), Positives = 161/370 (43%), Gaps = 29/370 (7%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            +++E        I+ +   GI I+   +G  + +N            +  ++       
Sbjct: 347 AQRLEEHEQFNRKIVASAPVGICILRTVDGTNILSNELAHNYLNMLTHEDRQR------- 399

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
                     LT+I+       ++      T     L +  +  +    +     + D+S
Sbjct: 400 ----------LTQIICGQQVNFVD----VLTSNHTNLQISFVHSRYRNENVAICVLVDVS 445

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
              + +  L    + AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R
Sbjct: 446 ARVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKALPKGVDR 504

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                  ++ S +L+L I++D+LD SKIES ++ +     S  E ++   +        K
Sbjct: 505 ---LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHISANYLPLVVRK 561

Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
           ++ +      ++P  +  D   ++Q+  N+LSNAI FT +G  II+     + + + + V
Sbjct: 562 QLGLYCFIEPDVPEQMSGDPMRLQQVISNLLSNAIKFTDTG-CIILHVQC-AGDYLQISV 619

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
           RDTG G+   E+ +   PF Q+    Q   +GTGLGL + + ++    G   + + P  G
Sbjct: 620 RDTGEGIPAKEVLRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIAVETEPGMG 679

Query: 802 TLIEIIFPLY 811
           +   I  PLY
Sbjct: 680 SRFTIRIPLY 689


>gi|254487932|ref|ZP_05101137.1| two-component hybrid sensor and regulator [Roseobacter sp. GAI101]
 gi|214044801|gb|EEB85439.1| two-component hybrid sensor and regulator [Roseobacter sp. GAI101]
          Length = 529

 Score =  294 bits (753), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 99/537 (18%), Positives = 189/537 (35%), Gaps = 45/537 (8%)

Query: 277 TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY 336
                          L +           R    +S         T   V+       V 
Sbjct: 15  AAEAFPVIGAIIIAALTSALALRKSAPPSRPTGDVSLAQQLRLLRTHTMVN------VVD 68

Query: 337 SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA 396
           +   L   N   L  T +   + I          D   L+D    K           +  
Sbjct: 69  TENLLVEVNDLLLEATGFSRDELIGQPVAKLYANDNVSLTDEIRSKLSNQQGWQGETL-- 126

Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD--TRINKRKMEIEVMQL 454
                 ++    +            +   + +       +       I +R + + + +L
Sbjct: 127 ------LRRRDGSICITQTTVTPLVDSDGKWIGSISARTDITKTIDLIAERDIGLTLHEL 180

Query: 455 CSILEATSDGIAIINREG-IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
                   D + I++ +       NRA  + FG+  +       +   +      +    
Sbjct: 181 R-------DDVWIVDEQAETFKYMNRAAKRRFGWTSKAYADLTLSQMAQDQDCKAVLDAC 233

Query: 514 TEILSLDLR-QTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572
             + S     + LE    G+  +  +  L         +  + + ++DI++   E+ K  
Sbjct: 234 AALKSKKETFEKLEACIFGTKFDVSIKWLH----PNTPNGRFLIMLNDITDRMAEERK-- 287

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
                       ++DF++ VSHE+R+PLT+I G   ++ ++  G L  P+ +       R
Sbjct: 288 ------------QADFVSMVSHELRSPLTSIKGAMGLLLSRAAGELS-PQAVGLLEIAHR 334

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
           + + ++ I+ND+LD+ KI SG+++   +   + E V EA+           + IR    +
Sbjct: 335 NADRLVLIINDILDMEKISSGRLDFDIKEFDVSEMVHEALRSNAATQQRSGVNIRCIGLD 394

Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752
               I  D   + Q+ +N++SNA  F+  G  I +     ++  V + VRD G G+   +
Sbjct: 395 VPHMIQTDSNRIIQVLINLMSNAAKFSKPGATIEVMVERLASG-VRVSVRDEGTGIPEKD 453

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             K  + F  + NS +    GTGLGL + KA+V+   G     S   +GT      P
Sbjct: 454 HHKIFQRFADMANSDRGAKGGTGLGLSICKAIVEGLGGTISFESREGEGTTFMFTLP 510



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 48/143 (33%), Gaps = 8/143 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D    L E+++ L +  G    ++IG  +  +    ++   + I   L  Q  W G+T 
Sbjct: 67  VDTENLLVEVNDLLLEATGFSRDELIGQPVAKLYANDNVSLTDEIRSKLSNQQGWQGETL 126

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           L   +G+       +   P+   + ++ G          R D                LH
Sbjct: 127 LRRRDGSICITQTTV--TPLVDSDGKWIGSI------SARTDITKTIDLIAERDIGLTLH 178

Query: 209 EIKKGHSSVEKEKYDIFSQQSPP 231
           E++     V+++           
Sbjct: 179 ELRDDVWIVDEQAETFKYMNRAA 201


>gi|86605618|ref|YP_474381.1| sensor histidine kinase [Synechococcus sp. JA-3-3Ab]
 gi|86554160|gb|ABC99118.1| sensor histidine kinase [Synechococcus sp. JA-3-3Ab]
          Length = 573

 Score =  294 bits (753), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 81/258 (31%), Positives = 129/258 (50%), Gaps = 8/258 (3%)

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            +Q+  +L  A+  AE  +  KS FLA  SHE+RTPL  IIGF  ++ +           
Sbjct: 293 LRQKNKELEQARAQAESANQLKSQFLANTSHELRTPLNGIIGFIRLVLDGM--AESREEE 350

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
           +++     RS   +L ++ND+LDI+KIE+GKM L FEP  L     +  +   L A +K 
Sbjct: 351 LDFLQEAYRSALHLLALINDVLDIAKIEAGKMQLQFEPCDLRALFKDVEAKTGLQAKQKG 410

Query: 684 ILIRTSFANNIPRIL--ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN--EEVIL 739
           + +         RI    D + + Q+ LN++ NAI FTP G  + +             +
Sbjct: 411 LQLSFHLPPTPDRIWLYGDYQRLLQVMLNLVGNAIKFTPKGS-VTVRADLLPGDPGMARI 469

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TP 798
           RV DTG+G++  + +K  + F Q+  S   +  GTGLGL +++ +V+A  G+   +S   
Sbjct: 470 RVIDTGIGVSLEKQQKLFQAFTQVDGSTTRQYGGTGLGLAISQRLVEAMGGEINFYSLGE 529

Query: 799 AKGTLIEIIFPLYDTSHP 816
             G+ +    PLY    P
Sbjct: 530 GLGSTVTFTVPLYRQPLP 547


>gi|312134120|ref|YP_004001458.1| multi-sensor signal transduction histidine kinase
           [Caldicellulosiruptor owensensis OL]
 gi|311774171|gb|ADQ03658.1| multi-sensor signal transduction histidine kinase
           [Caldicellulosiruptor owensensis OL]
          Length = 566

 Score =  294 bits (753), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 79/377 (20%), Positives = 151/377 (40%), Gaps = 58/377 (15%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            ++E E  +L  IL+  SDGI  +N +  I+  N +  K                     
Sbjct: 239 SELEFEKQKLERILQNMSDGILAVNSKNEIIHINESAEKFL------------------- 279

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL-RIIIKKLPFSSCYSLTMHDISE 563
                     E +  D      K       +   L +           +     +HDI++
Sbjct: 280 --KGNIEGFLEYVRGDKDCGDMKEIY--EVDGWTLEVNTATFVDSYQGTGRIFILHDITQ 335

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             +                  +  F+A VSHE+RTP+T I  +SE + +           
Sbjct: 336 QAKL--------------DRMRKQFVADVSHELRTPITTIKTYSETLLD----VDDEAVK 377

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            E+   I +  + +  +++DLL +S+++SG+  L  E V++ E +      ++++A +K 
Sbjct: 378 REFLGVIIKECDRMTRLISDLLYLSRLDSGENILKIEEVNVSELIRFVCEKMRIHAKKKN 437

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
             +  S   N+  I AD   ++Q+ +N+++NA+ +   GGQI +       E V + V+D
Sbjct: 438 QKLLCSAKENV-VIEADRDRLEQVLINLINNAVVYVQEGGQIEVGLE-KDEEHVKITVKD 495

Query: 744 TGVGMTNYELEKAMKPFGQIPNS-------QQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
            G G+   +L +  + F ++  +         +          +A  +V A+ GK  + S
Sbjct: 496 NGPGIPEDDLPRIFERFYRVDKARSRSLGGSGLGLS-------IADEIVKAHGGKIQVES 548

Query: 797 TPAKGTLIEIIFPLYDT 813
               GT   +I P+ +T
Sbjct: 549 RVGVGTKFTVILPVKNT 565


>gi|261340990|ref|ZP_05968848.1| phosphate regulon sensor kinase PhoR [Enterobacter cancerogenus
           ATCC 35316]
 gi|288316854|gb|EFC55792.1| phosphate regulon sensor kinase PhoR [Enterobacter cancerogenus
           ATCC 35316]
          Length = 431

 Score =  294 bits (753), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 76/427 (17%), Positives = 156/427 (36%), Gaps = 37/427 (8%)

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             +L       I     L  + W     L +                  G+    +  + 
Sbjct: 33  WFLLAAVTGLLIWHFWNLLRLSW----WLWVDRSMTPPPGSGSWEPLLYGLHQMQMRNKK 88

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            +R++   + +  S  E+  D + +   EG I   N    +L G    D   +     L 
Sbjct: 89  RRRELGSLIKRFRSGAESLPDAVILTTEEGTIFWCNGLAQQLLGLRWPDDNGQNILNLLR 148

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
               ++             ++   +         + L +R++         + +   D++
Sbjct: 149 YPEFTLYL----------KKRDFTRPHDLKLNNGRHLEIRVMPY---SDRQWLMVARDVT 195

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  Q +                + +F A VSHE+RTPLT + G+ E+++ Q        +
Sbjct: 196 QMHQLEG--------------ARRNFFANVSHELRTPLTVLQGYLEMMQEQTLEGAPREK 241

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                + +    + +  +V  LL +SKIE+       + + +   +       Q  +++K
Sbjct: 242 A---LHTMREQTHRMEGLVKQLLTLSKIEAAPSLALTDTIDVPMMLRVVEREAQTLSHKK 298

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
                    N++ ++L     ++    N++ NA++ TP G  I++    T        V 
Sbjct: 299 H-TFNFEVDNSL-KVLGSEDELRSAISNLVYNAVNHTPEGTHIVVRWQPTPAG-AEFSVE 355

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G G+    L +  + F ++  ++  +  G+GLGL + K  V+ +  +  I STP KGT
Sbjct: 356 DNGPGIAPEHLPRLTERFYRVDKARSRQTGGSGLGLAIVKHAVNHHESRLDIQSTPGKGT 415

Query: 803 LIEIIFP 809
               + P
Sbjct: 416 RFSFVMP 422


>gi|323137621|ref|ZP_08072698.1| PAS/PAC sensor signal transduction histidine kinase [Methylocystis
           sp. ATCC 49242]
 gi|322397247|gb|EFX99771.1| PAS/PAC sensor signal transduction histidine kinase [Methylocystis
           sp. ATCC 49242]
          Length = 501

 Score =  294 bits (753), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 81/505 (16%), Positives = 182/505 (36%), Gaps = 30/505 (5%)

Query: 320 NLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
                 ++  P+   ++          +++ ++    VD                     
Sbjct: 4   AELQAFIENMPVAAAMFDCDM------NYVAMSPRWRVDYERAGDPRENRHREILPEIPQ 57

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
             +           + + A     +    +   + +          E      +  +   
Sbjct: 58  RWREARSRVLGGETVISPAD--RFERADGSIQWVRWEFMPWRAASGEICGVVILAEDVTG 115

Query: 440 TRINKRKME-------IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
             +    +         +  Q+  + E    G+  ++R+   L  NR ++++ G P+E  
Sbjct: 116 RELADAALRDEAVETDRQRDQIEWLYENAPIGLCHLDRDLRYLCVNRWLAEINGLPIEAH 175

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE--KLLSLRIIIKKLPF 550
           + +          P +       + + +  + +E            +  SL +       
Sbjct: 176 IGRRVREVAPALAPGIEESARKILSTGEALRDIEFRGRAPRPPGVARYFSLSLHPAFDSE 235

Query: 551 SS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                +++ +H+++E K+        ++        K +FLA ++HE+R PL  I     
Sbjct: 236 GQIIGFNVVVHEVTEKKRIHALCETDRR--------KDEFLATLAHELRNPLAPIKNAVH 287

Query: 609 VI-KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
           V+   +        +         R  + +  +V+DLL+I++I  GK+ L      L   
Sbjct: 288 VLRLLEDDDSATKEKRRAALERAGRQVDHMARLVDDLLEITRISHGKVELRKARTDLAAI 347

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727
           +++AI L Q         +    +    +I  D   + Q+  N+++NA  +T +GG+I I
Sbjct: 348 LTQAIDLSQPQIQAGSHRLAVDLSTEPLQIDGDPVRLAQVFTNLINNAARYTDAGGRIEI 407

Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
           +      EE ++ VRD G+G+   +L    + F Q+  + +    G G+GL LA+++V  
Sbjct: 408 AAA-RDGEEAVVTVRDNGIGIPRQQLSSIFEMFAQVEPTCRRAPGGIGVGLALARSVVQL 466

Query: 788 NMGKFYIFST-PAKGTLIEIIFPLY 811
           + G+    S    +G+   +  PL 
Sbjct: 467 HGGRIEARSEGVGRGSEFIVRLPLA 491



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/265 (10%), Positives = 63/265 (23%), Gaps = 10/265 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D       ++  L +  G      IG R+ +V+  L          +L           
Sbjct: 151 LDRDLRYLCVNRWLAEINGLPIEAHIGRRVREVAPALAPGIEESARKILSTGEALRDIEF 210

Query: 149 L-WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRAL---GKRLDKKF 204
                    +     L+  P +    +  GF    +VH         AL    +R D+  
Sbjct: 211 RGRAPRPPGVARYFSLSLHPAFDSEGQIIGFN--VVVHEVTEKKRIHALCETDRRKDEFL 268

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
           + L    +   +  K    +            + + ++L       D          L  
Sbjct: 269 ATLAHELRNPLAPIKNAVHVLRLLEDDDSATKEKRRAALERAGRQVDH--MARLVDDLLE 326

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
                  + +      +          L     ++  +    +  +     D       +
Sbjct: 327 ITRISHGKVELRKARTDLAAILTQAIDLSQPQIQAGSHRLAVDLSTEPLQIDGDPVRLAQ 386

Query: 325 TVDKC--PIPFFVYSHGNLFYANPS 347
                      +  + G +  A   
Sbjct: 387 VFTNLINNAARYTDAGGRIEIAAAR 411


>gi|161615420|ref|YP_001589384.1| phosphate regulon sensor protein [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161364784|gb|ABX68552.1| hypothetical protein SPAB_03191 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 421

 Score =  294 bits (753), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 72/427 (16%), Positives = 156/427 (36%), Gaps = 37/427 (8%)

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             +L       +     L  + W     L +         +        G+    +  + 
Sbjct: 23  WFLLAAVTGLLVWHFWNLLRLSW----WLWVDRSMTPPPGRGSWEPLLYGLHQMQLRNKK 78

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            +R++   + +  S  E+  D + +   EG I   N    ++ G    D   +     L 
Sbjct: 79  RRRELGNLIKRFRSGAESLPDAVVLTTEEGGIFWCNGLAQQILGLRWPDDNGQNILNLLR 138

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
               +               +   +         + L +R++           +   D++
Sbjct: 139 YPEFTQYL----------KTRDFTRPLHLVLNTGRHLEIRVMPY---TDKQLLMVARDVT 185

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  Q +                + +F A VSHE+RTPLT + G+ E+++ Q        +
Sbjct: 186 QMHQLEG--------------ARRNFFANVSHELRTPLTVLQGYLEMMQEQALEGATREK 231

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                + +      +  +V  LL +SKIE+    L  E V +   +       Q  + +K
Sbjct: 232 A---LHTMREQTYRMEGLVKQLLTLSKIEAAPALLLNEKVDVPMMLRVVEREAQTLSQQK 288

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
                    +++  +L +   ++    N++ NA++ TP+G  I +S    ++      ++
Sbjct: 289 H-TFTFEVDDSL-SVLGNEEQLRSAISNLVYNAVNHTPAGTHITVSWRRVAHG-AEFCIQ 345

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G G+    + +  + F ++  ++  +  G+GLGL + K  ++ +  +  I S+P KGT
Sbjct: 346 DNGPGIAAEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHALNHHESRLEIDSSPGKGT 405

Query: 803 LIEIIFP 809
               + P
Sbjct: 406 RFSFVLP 412


>gi|298247450|ref|ZP_06971255.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297550109|gb|EFH83975.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 648

 Score =  294 bits (753), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 83/510 (16%), Positives = 191/510 (37%), Gaps = 50/510 (9%)

Query: 329 CPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
                 +      + + N     L  +   + +     ++  L   +   + A     L 
Sbjct: 163 AADAILIRDPVSRILFWNHGAEQLYGWSEQEVLGR---ITHSLLETRFPQSQAATDEALE 219

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
           +      A    L     +    + +        +   +      +  +  + R  ++  
Sbjct: 220 QK----GAWEGELTHTSRDGRT-VVVESRQALIRDDQGKPQAILEVNRDITERRGQEQHS 274

Query: 448 EIEVM----QLCSILEATSDGI-AIINREGIILSTNRAVSKLFGYPV-------EDILRK 495
           + E          IL++ S G+  +   +  +L  NR+  +++G          E +   
Sbjct: 275 QGEKPGSNPLFLRILDSLSCGVFLVTGADARLLFANRSAHQVWGTQWPFLQPLIEFLRTH 334

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP------ 549
             T+   Q  P   +   T              ++ S  + K L + I  +         
Sbjct: 335 DITILNAQGQPYAPDEMATFRAFKKGEHVHGLQSIVSRHDGKRLPILIYAEPFELPANMG 394

Query: 550 ---FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
                    L   DI+  K+ +                K +F+  V+HE++ PL  +  +
Sbjct: 395 LPASERAVLLMYQDITAIKEAEY--------------LKDEFVEIVAHELQNPLNTLASY 440

Query: 607 SEVIKNQRFG---PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +++++        P   P   +    I  S + +  +  DLLD++++++G++ L+ + V+
Sbjct: 441 ADLLQRDIKAENIPALTPHQQKAIAAITESTSSLSSLTEDLLDVTRLQAGRLVLNLQSVN 500

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
           +   + + I+ +Q   +  +I  + S    +  +  D   ++QI  NI+ NAI ++P GG
Sbjct: 501 IVPLIQQVIARLQATTSRHQIEFQASSETMLAHV--DPARLEQIMHNIIDNAIKYSPEGG 558

Query: 724 QIIISTTHTSNEEVIL-RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
            I+++      ++ IL +V+D G+G+   +  +    F +  N++  +  G GLGL L  
Sbjct: 559 PILMAFKEEPEQQRILGKVQDQGIGIPKQQHGRIFGRFMRADNARARQIPGIGLGLYLCH 618

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
            +++   G     S   +G+   + FP+ +
Sbjct: 619 ELIELMGGSISFDSEEGQGSTFYVTFPVGE 648



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/256 (10%), Positives = 62/256 (24%), Gaps = 37/256 (14%)

Query: 338 HGNLFYANPSFLLLTKYKSVDDIEIAGGL--------------STLLDAPKLSDNNAIKP 383
            G +  AN     L  Y   +    +                       P+    +    
Sbjct: 42  AGKIVMANKHTEKLFGYAEEELYGASFEFLFPSHLHEASLYEREQYFAIPQNYPKSEGLE 101

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
           +   + D         LH +  + +                 +      +    +   +N
Sbjct: 102 LYGQKKDGNEFPVEIDLHQLMLDDKLHALCVIHDMTDHKAAEQEQAAQALHLNLLTNLVN 161

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
                              D I I +    IL  N    +L+G+  +++L +     LE 
Sbjct: 162 LAA----------------DAILIRDPVSRILFWNHGAEQLYGWSEQEVLGRITHSLLET 205

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMH 559
             P         +         E     ++++ + + +      +               
Sbjct: 206 RFPQSQAATDEALEQKGA---WEGELTHTSRDGRTVVVESRQALIRDDQGKPQAILEVNR 262

Query: 560 DISEWKQEKNKLSHAK 575
           DI+E + ++      K
Sbjct: 263 DITERRGQEQHSQGEK 278



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/391 (9%), Positives = 97/391 (24%), Gaps = 30/391 (7%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D    +   +    +  G    +++G     + +           + L+++  W G+ T 
Sbjct: 171 DPVSRILFWNHGAEQLYGWSEQEVLGRITHSLLETRFPQSQAATDEALEQKGAWEGELTH 230

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
              +G  +   ++     I     +        I+ VNR   + R   +    +    + 
Sbjct: 231 TSRDGRTVV--VESRQALIRDDQGKPQ-----AILEVNRDITERRGQEQHSQGEKPGSNP 283

Query: 210 IKKGHSSVEKEKYDIFSQQSP--PPHLRMKNKVSSLTEYYAHKD-DVLKTEKYPLLTSEE 266
           +             + +          R  ++V      +     + L+T    +L ++ 
Sbjct: 284 LFLRILDSLSCGVFLVTGADARLLFANRSAHQVWGTQWPFLQPLIEFLRTHDITILNAQG 343

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
                 E        +        ++ +        +     P                +
Sbjct: 344 QPYAPDEMATFRAFKKGEHVHGLQSIVSRHDGKRLPILIYAEPFELPANMGLPASERAVL 403

Query: 327 DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA-------PKLSDNN 379
                   +       Y    F+ +  ++  + +      + LL         P L+ + 
Sbjct: 404 LMYQDITAIKEA---EYLKDEFVEIVAHELQNPLNTLASYADLLQRDIKAENIPALTPHQ 460

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
                 +  S  +  + +  L  +   +   L +        N  P              
Sbjct: 461 QKAIAAITESTSSLSSLTEDLLDVTRLQAGRLVLNLQSV---NIVPLIQQVIARLQATTS 517

Query: 440 TRINKRKMEIEV-------MQLCSILEATSD 463
               + +   E         +L  I+    D
Sbjct: 518 RHQIEFQASSETMLAHVDPARLEQIMHNIID 548



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 50/538 (9%), Positives = 126/538 (23%), Gaps = 70/538 (13%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY------- 144
            G +   ++   K  G    ++ G    +     H+    H   L +R+  +        
Sbjct: 42  AGKIVMANKHTEKLFGYAEEELYGASF-EFLFPSHL----HEASLYEREQYFAIPQNYPK 96

Query: 145 --GKTTL-WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN---------- 191
             G        +G    V IDL  L +  +           ++H                
Sbjct: 97  SEGLELYGQKKDGNEFPVEIDLHQLMLDDK------LHALCVIHDMTDHKAAEQEQAAQA 150

Query: 192 ---DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA 248
              +       L      + +              ++         R+ + +       +
Sbjct: 151 LHLNLLTNLVNLAADAILIRDPVSRILFWNHGAEQLYGWSEQEVLGRITHSLLETRFPQS 210

Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
                   E+      E +          +   Q   +   G  Q   + + +    R  
Sbjct: 211 QAATDEALEQKGAWEGELTHTSRDGRTVVVESRQALIRDDQGKPQAILEVNRDITERRGQ 270

Query: 309 PS-LSAYFDEGENLTPETVDKCPIPFFVY--SHGNLFYANPSFLLLTK--YKSVDDIEIA 363
                        L    +D      F+   +   L +AN S   +    +  +  +   
Sbjct: 271 EQHSQGEKPGSNPLFLRILDSLSCGVFLVTGADARLLFANRSAHQVWGTQWPFLQPLIEF 330

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
                +          A   +  +R+ +           +  +    L +          
Sbjct: 331 LRTHDITILNAQGQPYAPDEMATFRAFKKGEHVHGLQSIVSRHDGKRLPILIYAEPFELP 390

Query: 424 F-----PENMPQNGIEPEDVDTRINK----RKMEIEVMQLCSILEATSDGIAIINREGII 474
                         +  +    +  +      +EI   +L + L   +            
Sbjct: 391 ANMGLPASERAVLLMYQDITAIKEAEYLKDEFVEIVAHELQNPLNTLA------------ 438

Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
                + + L      DI  +                 +TE  S     T + + +   +
Sbjct: 439 -----SYADLL---QRDIKAENIPALTPH--QQKAIAAITESTSSLSSLTEDLLDVTRLQ 488

Query: 535 EEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
             +L+     +  +P        +   +   Q + + S    +A  + +     +  +
Sbjct: 489 AGRLVLNLQSVNIVPLIQQVIARLQATTSRHQIEFQASSETMLAHVDPARLEQIMHNI 546


>gi|189423648|ref|YP_001950825.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi
           SZ]
 gi|189419907|gb|ACD94305.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi
           SZ]
          Length = 667

 Score =  294 bits (753), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 83/290 (28%), Positives = 136/290 (46%), Gaps = 14/290 (4%)

Query: 536 EKLLSLRIIIKKLPFSSCYSLTMHDISEW----KQEKNKLSHAKKIAEKESSHKSDFLAR 591
             L+ +    +    ++  +     + +     +Q + +L  AK  AE  ++ KS+FLA 
Sbjct: 238 GTLIEVDSDDEPGRAAAAVNGLARSLQQRSEENRQAREELLQAKSEAEAANTAKSEFLAN 297

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           +SHEIRTP++ +IG +++++  +     N     Y   I+     ++ ++ND+LDISKIE
Sbjct: 298 MSHEIRTPMSGLIGNAQLLRLTQL----NAEQTGYLTNIETDAKNLMSLINDVLDISKIE 353

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALN 710
           +GK+ L   P SL   V++ +   +     K I++    A ++P  +  D   +KQI  N
Sbjct: 354 AGKLELESAPFSLRSCVAQLLKSQEARIAAKAIVLTHEIAADLPDSLFGDQLRLKQILYN 413

Query: 711 ILSNAIHFTPSGGQIIIST----THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
           ++ NAI FT  G +I +       H         V DTG+G+     EK   PF Q   S
Sbjct: 414 LVGNAIKFTAKG-EIRVKVELLERHDDKARFCFSVTDTGIGIRPEAREKIFAPFIQADAS 472

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
              R  GTGLGL +   +V    G   + S   KG+   +  P    S P
Sbjct: 473 VTRRFGGTGLGLSICSRLVQQMGGGITVESEEGKGSTFSVTLPFLINSQP 522


>gi|83777315|gb|ABC46993.1| PAS/PAC domain-containing protein [Arthrospira platensis Ap-s]
          Length = 607

 Score =  294 bits (753), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 79/265 (29%), Positives = 145/265 (54%), Gaps = 21/265 (7%)

Query: 561 ISEWKQEKNKLSH-------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
           +S+ K+++ +L++         + A+  +  KS+FLA +SHEIRTP+ A++GF++++++ 
Sbjct: 284 LSQEKEQRQELTYKNIRLKKMTEEAKAANRAKSEFLANMSHEIRTPMNAVLGFADLLQST 343

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
               + +P+   Y   I  SG  +L ++ND+LD+SKIE+GK+ LH+EPV++   ++E   
Sbjct: 344 ----ITDPQASSYIKAIASSGRTLLALINDILDLSKIEAGKLQLHYEPVNIRTIINEIEH 399

Query: 674 LVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
           + +  A EK I ++   A  IP  I+ D   ++QI  NI+ N+I FT  G  + I  + +
Sbjct: 400 IFEQKAKEKNIELQVYIAPEIPYSIIMDEVRLRQILFNIVGNSIKFTEFGS-VKIMASCS 458

Query: 733 S--------NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
                    +  + + + DTG+G++  + +K    F Q       +  GTGLGL + + +
Sbjct: 459 QLKPNHPYNSINLKIAITDTGIGISPEDQQKIFDSFTQSEGQSNRKYGGTGLGLTITERL 518

Query: 785 VDANMGKFYIFSTPAKGTLIEIIFP 809
           V    G  ++ S   +G+     FP
Sbjct: 519 VHLLGGSIHLESQINQGSTFTFDFP 543



 Score = 54.6 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 12/109 (11%), Positives = 36/109 (33%), Gaps = 8/109 (7%)

Query: 475 LSTNRAVSKLFGYPVEDILRKP--FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
           L  + A  +++    + + + P  + + +     + M   L + +S  +     +     
Sbjct: 2   LYVSPAYEQIWQQSRDSLYKNPSLWLMCVHPEDRNAMTEALNKQISQGIA--FNETYRIV 59

Query: 533 TKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKI 577
             +  +  +      +         Y+    DI+  K  +N L +  + 
Sbjct: 60  RPDGSIRWIESRAFPVRDKQGNIYRYTGIAEDITHRKNIENALQNQLQK 108


>gi|229079814|ref|ZP_04212346.1| hypothetical protein bcere0023_24660 [Bacillus cereus Rock4-2]
 gi|228703398|gb|EEL55852.1| hypothetical protein bcere0023_24660 [Bacillus cereus Rock4-2]
          Length = 590

 Score =  294 bits (753), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 88/507 (17%), Positives = 178/507 (35%), Gaps = 41/507 (8%)

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
               +      E      +   P+    +  +G+    N    ++T Y + + I     L
Sbjct: 96  QSKSTTLLSRKEEELHTILQNMPVMVDALDYNGDFVLWNRECEIVTGYTAEEIIGNPNAL 155

Query: 367 STLLDAPKLSDNNAIKPVM----LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
             L            K +         +      +  + TI W+                
Sbjct: 156 QLLYPDYNYRHQIQKKFLTCGKNFRDWEMHLTCKNGEIKTIMWSN-----------ISEQ 204

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
                     +  +    +  + +++ +  +L  I +A  D   +   +G I+       
Sbjct: 205 FPVTGYSYWAVGVDITHLKAIEEQLKQQTSELELIFKALPDLCFLTEDDGTIIDYKAGSP 264

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
             F  P E  + K F   L  +        + ++        +E           +    
Sbjct: 265 TKFYVPAEAFMGKKFYEVLPSSVAQQFQEAINQVKEKGTNVIVEYPLTL---NGSIDFFE 321

Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
                L       + + DI+E K+ +  L+ +  +A           A V+HE+R PLT 
Sbjct: 322 ARCLPLLHDK-IMIIVRDITERKKTEELLNKSDTLA-----AIGQLAAGVAHEVRNPLTV 375

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           I GF +         +      +Y + +      +  I+ + L I+K +     ++ E  
Sbjct: 376 IKGFIQ------LFQINKEDQEKYFDLMLSEIERIEAILQEFLAIAKTD----EINTEKK 425

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
           ++ +     +SL+   A    I +     +    I      +KQ+ +NIL N+I   P+G
Sbjct: 426 NIYQIFKNVVSLMNTKAIMTNIQVELFTDDKDIIIECSENQLKQVFINILQNSIEAMPNG 485

Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
           G+I I     +++ VI+ V D G+G+    +++  +PF         + +GTG+GL L+ 
Sbjct: 486 GEISIHIKEINDDGVIIHVIDEGIGIPEERIKRLGEPFY------STKEKGTGIGLMLSY 539

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFP 809
            +++++ G   I S    GT + I  P
Sbjct: 540 KIIESHQGTISIMSEVGVGTTVTIYLP 566


>gi|221633575|ref|YP_002522801.1| histidine kinase PhoR1 [Thermomicrobium roseum DSM 5159]
 gi|221157115|gb|ACM06242.1| histidine kinase PhoR1 [Thermomicrobium roseum DSM 5159]
          Length = 421

 Score =  294 bits (753), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 95/447 (21%), Positives = 181/447 (40%), Gaps = 35/447 (7%)

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
           TL  A  L+        + ++  R        L  ++        +   P   A      
Sbjct: 3   TLFLATALAFVAGALVALFWQRHRFGAELRRMLAQLRREHPTIGPLQ-RPLLDARSLDAF 61

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
                     ++  + +        QL ++ +  SDG+ +++ +G ++S NRA  +L   
Sbjct: 62  RFLLDDALRFLERELEQASARQS--QLAALFDHLSDGVVLVDPDGQVVSLNRAARELLPG 119

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
              + L +P+   L       +N  +   L+     T   + LG  +  + +  ++ + +
Sbjct: 120 GRSEALGRPYAEVLRDY---ELNELVARALAGAAPTTGRFVELGRPR--RSIQAQVSVLQ 174

Query: 548 LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
                  +L + DI+E ++ +                + DF+A VSH++RTPL A+    
Sbjct: 175 GADRPLVTLVLRDITELRRTET--------------IRRDFVANVSHDLRTPLAALQALV 220

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
           E + +            ++   I      +  +VN LL+++K ESG++ L   P  L E 
Sbjct: 221 ETLLDGALADPAVAE--DFLRRIAVEVEHMTRLVNQLLELTKAESGQLQLARVPTDLAEL 278

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727
               +   +  A  K I +    A  +P +  D   + Q+  N+L NA+ FTP+GGQI +
Sbjct: 279 ARATLRRFEPRAASKGIALTVQVAPELPPVACDPERIGQVLANLLDNALKFTPAGGQITV 338

Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ----QIRGEGTGLGLPLAKA 783
                ++ E I+RVRDTG G+   EL++  + F +   ++       G        + K 
Sbjct: 339 EIA-AASGEAIVRVRDTGPGIPADELDRVFERFFKGDRARSGGGSGLGL------AIVKH 391

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFPL 810
           +V  + G+ +  S P  G ++    PL
Sbjct: 392 LVQLHGGRVWAESPPGGGAIVGFALPL 418



 Score = 48.5 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/292 (7%), Positives = 59/292 (20%), Gaps = 14/292 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D  G +  ++    + +     + +G    +V     ++             T      
Sbjct: 100 VDPDGQVVSLNRAARELLPGGRSEALGRPYAEVLRDYELNELVARALAGAAPTTGRFVEL 159

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
             P       V +      +   +R         ++           + +      SH  
Sbjct: 160 GRPRRSIQAQVSV------LQGADRPLVTL----VLRDITELRRTETIRRDFVANVSHDL 209

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
                      E     +   P        +++   E+     + L           + +
Sbjct: 210 RTPLAALQALVETLLDGALADPAVAEDFLRRIAVEVEHMTRLVNQLLELTKAESGQLQLA 269

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
               +            +    +                            NL    +  
Sbjct: 270 RVPTDLAELARATLRRFEPRAASKGIALTVQVAPELPPVACDPERIGQVLANLLDNALKF 329

Query: 329 CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
            P    +     +  A  S   + + +       A  L  + +     D   
Sbjct: 330 TPAGGQI----TVEIAAASGEAIVRVRDTGPGIPADELDRVFERFFKGDRAR 377



 Score = 40.8 bits (94), Expect = 0.89,   Method: Composition-based stats.
 Identities = 17/205 (8%), Positives = 41/205 (20%), Gaps = 22/205 (10%)

Query: 274 DFHTINLNQYTKKQYFGTLQNNSKESFEYLS--------HRNHPSLSAYFDEGENLTPET 325
           +   +      +    G LQ    ++    +         R            ++     
Sbjct: 30  ELRRMLAQLRREHPTIGPLQRPLLDARSLDAFRFLLDDALRFLERELEQASARQSQLAAL 89

Query: 326 VDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGG-----LSTLLDAPKLSDNN 379
            D        V   G +   N +   L      + +                  +     
Sbjct: 90  FDHLSDGVVLVDPDGQVVSLNRAARELLPGGRSEALGRPYAEVLRDYELNELVARALAGA 149

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
           A          R   +  A++  +Q      + +      +  +                
Sbjct: 150 APTTGRFVELGRPRRSIQAQVSVLQGADRPLVTLVLRDITELRRTETIRRDFVANVSHDL 209

Query: 440 TRINKRKMEIEVMQLCSILEATSDG 464
                         L +++E   DG
Sbjct: 210 RTPLAA--------LQALVETLLDG 226


>gi|330504152|ref|YP_004381021.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
           mendocina NK-01]
 gi|328918438|gb|AEB59269.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
           mendocina NK-01]
          Length = 916

 Score =  294 bits (753), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 82/262 (31%), Positives = 143/262 (54%), Gaps = 13/262 (4%)

Query: 567 EKNKLSHAKKIAEKE---SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            K +   +++ AE+    S  KS FLA++SHEIRTPL  ++G  ++++        +   
Sbjct: 387 LKEEGFQSRRAAEQAAFESQAKSRFLAKMSHEIRTPLNGVLGMLQLLRETPM----DRSQ 442

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
             Y + I  SG+ ++ ++ND+LD ++IESGK++L      L++ +SE +SL    A +KR
Sbjct: 443 RFYVDTISSSGSSLMAVINDILDYARIESGKLSLEQIEFDLEDMISETLSLFTGQALDKR 502

Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVI 738
           + +  S  N +P RI  D   +KQ+ +N+LSNA+ FT  G  + +S +  S+      ++
Sbjct: 503 LRLYVSLENGVPRRIQGDPTRLKQVLMNLLSNALKFTAEG-HVAVSVSRRSDSHGKPHLV 561

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
             V D+G+G++   L +  + F Q  +S   R  G+GLGL ++K +V+   G+  + ST 
Sbjct: 562 FAVSDSGIGISEQALAQLFESFAQGDSSTTRRYGGSGLGLAISKELVEMMGGRIEVQSTL 621

Query: 799 AKGTLIEIIFPLYDTSHPHDCI 820
            +GT      PL +     D +
Sbjct: 622 GQGTRFAFDIPLLNEQDAPDEL 643


>gi|148981000|ref|ZP_01816249.1| phosphate regulon sensor protein [Vibrionales bacterium SWAT-3]
 gi|145961040|gb|EDK26362.1| phosphate regulon sensor protein [Vibrionales bacterium SWAT-3]
          Length = 432

 Score =  294 bits (753), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 80/421 (19%), Positives = 159/421 (37%), Gaps = 36/421 (8%)

Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
                +    RL    W+ +            +         NGI       R  ++++ 
Sbjct: 42  QLGWHLHNQMRLSAWLWDEKR-------LTPPSGSGNWESLFNGIYRMQQRQRPKRKELT 94

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
             + +  +  E+  D + +   EG I+  N+    L G+   D   +P +  +       
Sbjct: 95  NLIRRFRNGAESLPDAVVVFRGEGNIVWCNKLAQYLLGFRWPDDSGQPISNLIRTPDFIK 154

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568
             +       L++   L    +          L + I        + + + D+++ KQ +
Sbjct: 155 YLNKQDFSEPLEMPSPLNVERM----------LELRIVPYTEGE-HLMVVRDVTQLKQLE 203

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
                           + +F A VSHE+RTP+T + G+ E+   +    +  P + +   
Sbjct: 204 G--------------MRRNFFANVSHELRTPMTVLQGYLEM--TEDPDMIVGPMWTKAHG 247

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            +    N +  +VN LL +SKIE+  M+   E V++   +          + E+   +  
Sbjct: 248 VMTEQLNRMNSLVNQLLTLSKIEAAPMHELDEVVNVPAMLEVLEKEAASLSGEREHKLEF 307

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748
               ++ R+LAD   ++    N++ NA+ +TP+G  + +    TS     L V DTG G+
Sbjct: 308 DIDKSL-RVLADEDQLRSAISNLVYNAVKYTPAGATVKVRWYQTSQG-ACLDVSDTGDGI 365

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
               L +  + F ++  ++     G+GLGL + K  +  +     I S    G+      
Sbjct: 366 EPQHLHRLTERFYRVDKARSRDTGGSGLGLAIVKHALSHHDSHLEIQSEVGVGSRFHFTL 425

Query: 809 P 809
           P
Sbjct: 426 P 426


>gi|228952958|ref|ZP_04115020.1| hypothetical protein bthur0006_23480 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228806679|gb|EEM53236.1| hypothetical protein bthur0006_23480 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 590

 Score =  294 bits (753), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 88/501 (17%), Positives = 177/501 (35%), Gaps = 41/501 (8%)

Query: 314 YFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                E      +   P+    +  +G+    N    ++T Y + + I     L  L   
Sbjct: 102 LLSRKEEELHTILQNMPVMVDALDYNGDFVLWNRECEIVTGYTAEEIIGNPNALQLLYPD 161

Query: 373 PKLSDNNAIKPVM----LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
                    K +         +      +  + TI W+                      
Sbjct: 162 YNYRHQIQKKFLTCGKNFRDWEMHLTCKNGEIKTIMWSN-----------ISEQFPVTGY 210

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
               +  +    +  + +++ +  +L  I +A  D   +   +G I+         F  P
Sbjct: 211 SYWAVGVDITHLKAIEEQLKQQTSELELIFKALPDLCFLTEDDGTIIDYKAGSPTKFYVP 270

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            E  + K F   L  +        + ++        +E           +         L
Sbjct: 271 AEAFMGKKFYEVLPSSVAQQFQEAINQVKEKGTNVIVEYPLTL---NGSINFFEARCLPL 327

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                  + + DI+E K+ +  L+ +  +A           A V+HE+R PLT I GF +
Sbjct: 328 LHDK-IMIIVRDITERKKTEELLNKSDTLA-----AIGQLAAGVAHEVRNPLTVIKGFIQ 381

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
                    +      +Y + +      +  I+ + L I+K +     ++ E  ++ +  
Sbjct: 382 ------LFQINKEDQEKYFDLMLSEIERIEAILQEFLAIAKTD----EINTEKKNIYQIF 431

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
              +SL+   A    I +     +    I      +KQ+ +NIL N+I   P+GG+I I 
Sbjct: 432 KNVVSLMNTKAIMTNIQVELFTDDKDIIIECSENQLKQVFINILQNSIEAMPNGGEISIH 491

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
               +++ VI+ V D G+G+    +++  +PF         + +GTG+GL L+  +++++
Sbjct: 492 IKEINDDGVIIHVIDEGIGIPEERIKRLGEPFY------STKEKGTGIGLMLSYKIIESH 545

Query: 789 MGKFYIFSTPAKGTLIEIIFP 809
            G   I S    GT + I  P
Sbjct: 546 QGTISIMSEVGVGTTVTIYLP 566


>gi|308273634|emb|CBX30236.1| hypothetical protein N47_D30450 [uncultured Desulfobacterium sp.]
          Length = 598

 Score =  294 bits (753), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 81/364 (22%), Positives = 165/364 (45%), Gaps = 27/364 (7%)

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
           +  ++ +IL + ++G+  +N E  I++ N +V+++F  P  +++ +     +       +
Sbjct: 254 QQKEIEAILSSMTEGLVAVNMEEKIINVNSSVARMFHRPASELINRSVQEVVR---NPEL 310

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQE 567
           + ++ +    +     E         E LL++R    K        +   ++D++  +  
Sbjct: 311 HQFVRKAFLDESPH--ETDLSFHFDGETLLNIRSTPLKNAGGDRIGFLFILNDVTRLRHL 368

Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
           +              + + DF A VSHEI+TPLTAI GF+E +K              + 
Sbjct: 369 E--------------NMRRDFAANVSHEIKTPLTAIKGFTETLKAGALNK--PEEAFRFV 412

Query: 628 NYIDRSGNLVLDIVNDLLDISKIE--SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
             I+   N ++ I++DL+ +S IE  S    +      +   +  AI + +L A+EK+I 
Sbjct: 413 GIIENHTNRLISIIDDLMKLSFIEQNSAGQEIALMDCMIRPILLSAIQICRLKADEKKIK 472

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           I       +     +   ++Q  +N++ NAI ++     + I    +    + +  RD G
Sbjct: 473 IVCICDEGL-SAKINAALIEQAFVNLIDNAIKYSEPETSVEIEALKSETG-ITIVFRDHG 530

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+++  + +  + F ++  S+  +  GTGLGL + K +V+AN G   + S P KG+   
Sbjct: 531 IGISSEHIPRLFERFYRVDASRSRKLGGTGLGLAIVKHIVNANGGDISVESKPGKGSSFC 590

Query: 806 IIFP 809
           I  P
Sbjct: 591 IQIP 594


>gi|296129123|ref|YP_003636373.1| multi-sensor signal transduction histidine kinase [Cellulomonas
           flavigena DSM 20109]
 gi|296020938|gb|ADG74174.1| multi-sensor signal transduction histidine kinase [Cellulomonas
           flavigena DSM 20109]
          Length = 589

 Score =  294 bits (753), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 96/597 (16%), Positives = 197/597 (32%), Gaps = 52/597 (8%)

Query: 242 SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301
                Y      +        +  E  LP    F    + Q        +          
Sbjct: 11  PQVPQYLRYLGRVGRVLGSRASVVERQLPFVALFGLAVVGQLVMGVPPTSAAGLVLAVGL 70

Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTK---YKSVD 358
            +      +++  +     ++PE +              L YA                 
Sbjct: 71  TVLVLV-LAVAVPWRRLPPVSPEVLTLLQFVVVAA----LRYATGGAASPYGTMVLLPAL 125

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ--------WNRENS 410
            + + GGL  +      +  + +  + L R      +   R   +         +  E +
Sbjct: 126 ALSVRGGLPGVFVGAAGAAVSILVGLGLTRGAVMSGSVVLRSLFVSAIALIIGLFVHETA 185

Query: 411 LAMTFI-PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD-GIAII 468
             +          Q  +            +             QL S++++ ++  I   
Sbjct: 186 TRLRARNAALAQLQLEQQTLLEQARAAATELERAVTVRRAAYEQLVSVIDSATEQAIIAT 245

Query: 469 NREGIILSTNRAVSKLFGYPVEDILRK------PFTVFLEQNTPSVMNHYLTEIL----- 517
           +  G I   N    +L GY    ++ +           +   T       L + L     
Sbjct: 246 DATGRIEVFNAGAERLLGYSQGAVVGRLRLVDLHLADEVLARTGESPGADLQDALVDALV 305

Query: 518 -SLDLRQTLEKITLGSTKEEKLLSLRIIIKK----LPFSSCYSLTMHDISEWKQEKNKLS 572
                             +   +++   + +        + Y +   D++  +       
Sbjct: 306 APRRGPAGAATDWTYVRADGSHVTVHPAVTRRTEPDGSVAGYVVVATDVTAER------- 358

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
                  + +  K  F+  VSHE+RTPLT+++G+ E++ +            EY   IDR
Sbjct: 359 -------EAARLKDQFVGLVSHELRTPLTSVLGYVELLLDG--TEELTDEQREYLGIIDR 409

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
           +    L +V+DLL  +++++G   +    V        +++     A+   + +      
Sbjct: 410 NARRQLRLVSDLLLSAQVDAGTFAISPTDVDAAVVARASLASAAPAADAAGVTLAGDLRP 469

Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752
               + AD   + Q   N++SNA+ FTP+GG + +S     +   ++ V DTG+G+   E
Sbjct: 470 A--PLRADPVRLGQAIDNLVSNALKFTPTGGTVRVSVEPGDDGGAVVAVSDTGIGIPPDE 527

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           L    + F +   + +    G GLGL + +A+V+A+ G   I ST  +GT   ++ P
Sbjct: 528 LANLTERFYRASTATRRAIPGVGLGLSITRAVVEAHGGTVRIASTVGEGTTFTLVLP 584



 Score = 41.2 bits (95), Expect = 0.68,   Method: Composition-based stats.
 Identities = 26/257 (10%), Positives = 61/257 (23%), Gaps = 17/257 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGM-------RLCDVSDILHIDPNNHIGDLL---- 137
            DA G ++  +    + +G     ++G           +V       P   + D L    
Sbjct: 245 TDATGRIEVFNAGAERLLGYSQGAVVGRLRLVDLHLADEVLARTGESPGADLQDALVDAL 304

Query: 138 -KRQNTWYGKTTLW-PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA 195
              +    G  T W  +     +V +  A       +   +G+    +V    V  +  A
Sbjct: 305 VAPRRGPAGAATDWTYVRADGSHVTVHPAVTRRTEPDGSVAGY----VVVATDVTAEREA 360

Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255
              +        HE++   +SV      +          + +               V  
Sbjct: 361 ARLKDQFVGLVSHELRTPLTSVLGYVELLLDGTEELTDEQREYLGIIDRNARRQLRLVSD 420

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
                 + +   ++   +    +                    + +              
Sbjct: 421 LLLSAQVDAGTFAISPTDVDAAVVARASLASAAPAADAAGVTLAGDLRPAPLRADPVRLG 480

Query: 316 DEGENLTPETVDKCPIP 332
              +NL    +   P  
Sbjct: 481 QAIDNLVSNALKFTPTG 497


>gi|120601400|ref|YP_965800.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4]
 gi|120561629|gb|ABM27373.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4]
          Length = 1140

 Score =  294 bits (753), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 105/664 (15%), Positives = 198/664 (29%), Gaps = 63/664 (9%)

Query: 189  VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA 248
                     K        L +        +     I              + S L  Y  
Sbjct: 377  DKRRVEGKIKDQLSYLRQLTDTIPLPVYSKDADGRIRECNLAFLQFFSVERESVLGRYEW 436

Query: 249  HKDDVLKTEKYPLLTS---EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
               + L   +  + T    E       +     +        +  T  N        +  
Sbjct: 437  QAGERLALLRNAVDTDLMREPGQAAYDDTLPGPDGEARNVIVHKATYSNARGAIAGLVGV 496

Query: 306  ----RNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDI 360
                 +           E       +  P+  F  S  G+L  ANP+F  +  Y S   I
Sbjct: 497  VVDYTDRKRAEDSLRAAEEKYRSIFESSPLGIFRLSPEGSLSDANPAFARMAGYDSSPAI 556

Query: 361  EIAG--GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
               G   +  LL    L+       +                  +Q    N   M     
Sbjct: 557  MEQGRPAMDALLSGLDLARVGHEGILTWVA-------------DVQRPDGNRCTMHLTLL 603

Query: 419  EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
             + +         G   +    +  +R +      L  +L+     +   +R+   +  N
Sbjct: 604  IRRDALGALRLVEGYAEDITKRKETERALSASQRMLRLVLDNIPQFVYWTDRDLRFIGAN 663

Query: 479  RAVSKLFGY-PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
            R+    FG+    DI        L   +   +       +        +     ++   +
Sbjct: 664  RSFLTFFGFAESHDISGLTMNDILHDGSALEIVQEANHAVIETGNPRYQSKLTITSPAGE 723

Query: 538  LLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
             + L      L       +    T  D+++    + +L  ++K+              +S
Sbjct: 724  KVWLETSRVPLMGERGDVVGLLTTAEDVTQRIHLERQLLQSQKM-----EAIGTLAGGIS 778

Query: 594  HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
            H+    LT+II   E+  N       +  + +      ++      +V  +L  S+    
Sbjct: 779  HDFNNILTSIINSIELAINDV--AADSLTFTDLMR-ALKAAQRGSRLVKQILTFSRPSVE 835

Query: 654  KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713
                 F  V L+E V+EA+ L++       I +RT+   +     AD   + Q+ +N+ +
Sbjct: 836  G----FTTVDLNEVVTEALVLIKASMPR-NIQVRTAVPPDPSITRADPTQLHQVIMNLCT 890

Query: 714  NAIHF-TPSGGQIIISTTHTSNE-------------EVILRVRDTGVGMTNYELEKAMKP 759
            N+ H    SGG + I+                     + L V D G G+    L+K   P
Sbjct: 891  NSFHALRESGGVLDINLEQEPIGPEEAHAFGVEPGCWLRLTVSDNGPGIPQEILDKIFDP 950

Query: 760  FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH---- 815
            F         + EGTGLGL +   ++  + G   + S   + T  EI+ P+ + +     
Sbjct: 951  FFTTKG----KTEGTGLGLAVVHGIIKGHRGAIRVSSLAHRRTAFEILLPMQEQTECPLS 1006

Query: 816  PHDC 819
            P D 
Sbjct: 1007 PADA 1010



 Score =  104 bits (259), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 41/366 (11%), Positives = 113/366 (30%), Gaps = 24/366 (6%)

Query: 239 KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE 298
           + +     + +K+         +L      + E   F+ +N   +        + + +  
Sbjct: 310 ERADEEYMFDNKELTRLFISRSMLPPGSVVINEPSRFYELNKQVFWTIIISLVILSLTLV 369

Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSV 357
                +  +   +     +  +   +  D  P+P +     G +   N +FL     +  
Sbjct: 370 LLVM-NILDKRRVEGKIKDQLSYLRQLTDTIPLPVYSKDADGRIRECNLAFLQFFSVERE 428

Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
             +             +L+         L R         A   T+      +  +    
Sbjct: 429 SVLGRYEWQ----AGERLALLRNAVDTDLMREPGQA----AYDDTLPGPDGEARNVIVHK 480

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
              +N         G+  +  D +  +  +     +  SI E++  GI  ++ EG +   
Sbjct: 481 ATYSNARGAIAGLVGVVVDYTDRKRAEDSLRAAEEKYRSIFESSPLGIFRLSPEGSLSDA 540

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE--ILSLDLRQTLEKITLGSTKE 535
           N A +++ GY          +  + +     M+  L+   +  +     L  +      +
Sbjct: 541 NPAFARMAGYDS--------SPAIMEQGRPAMDALLSGLDLARVGHEGILTWVADVQRPD 592

Query: 536 EKLLSLRIIIKKLPFSSCYSLTM----HDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
               ++ + +     +      +     DI++ K+ +  LS ++++      +   F+  
Sbjct: 593 GNRCTMHLTLLIRRDALGALRLVEGYAEDITKRKETERALSASQRMLRLVLDNIPQFVYW 652

Query: 592 VSHEIR 597
              ++R
Sbjct: 653 TDRDLR 658



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/385 (10%), Positives = 100/385 (25%), Gaps = 15/385 (3%)

Query: 78  PIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL 137
                +   ++ DA G ++E +    +        ++G       + L +  N    DL+
Sbjct: 396 TDTIPLP-VYSKDADGRIRECNLAFLQFFSVERESVLGRYEWQAGERLALLRNAVDTDLM 454

Query: 138 KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG 197
           +         TL   +G    V +        +     +G    G+V             
Sbjct: 455 REPGQAAYDDTLPGPDGEARNVIV--HKATYSNARGAIAGL--VGVVVDYTDRKRAEDSL 510

Query: 198 KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257
           +  ++K+  + E           +  +         +   +   ++ E      D L + 
Sbjct: 511 RAAEEKYRSIFESSPLGIFRLSPEGSLSDANPAFARMAGYDSSPAIMEQGRPAMDALLSG 570

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
                   E  L    D    + N+ T        ++          +    +     + 
Sbjct: 571 LDLARVGHEGILTWVADVQRPDGNRCTMHLTLLIRRDALGALRLVEGYAEDITKRKETER 630

Query: 318 G----ENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                + +    +D  P    +         AN SFL    +    DI        L D 
Sbjct: 631 ALSASQRMLRLVLDNIPQFVYWTDRDLRFIGANRSFLTFFGFAESHDISGLTMNDILHDG 690

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
             L         ++   +    +      TI       + +         +  + +    
Sbjct: 691 SALEIVQEANHAVIETGNPRYQS----KLTITSPAGEKVWLETSRVPLMGERGDVVGLLT 746

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSI 457
              +       +R++     ++ +I
Sbjct: 747 TAEDVTQRIHLERQLLQS-QKMEAI 770


>gi|85860923|ref|YP_463125.1| signal transduction histidine kinase [Syntrophus aciditrophicus SB]
 gi|85724014|gb|ABC78957.1| signal transduction histidine kinase [Syntrophus aciditrophicus SB]
          Length = 683

 Score =  294 bits (753), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 75/257 (29%), Positives = 128/257 (49%), Gaps = 20/257 (7%)

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           Q +  L  AK+ AE  +  KSDFLA +SHEIRTP+ AI+G +E++      P        
Sbjct: 134 QAEKALFEAKEEAEAANRAKSDFLASMSHEIRTPMHAILGMAELLLETPLSP----EQQR 189

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           Y      +G  +L+I+ND+LDISK+E+G + L      L E +   +  + + A+ K + 
Sbjct: 190 YVEIFRNAGENLLNIINDILDISKVEAGHLELENIEFDLGEIIERTVEALAIRAHGKGLE 249

Query: 686 IRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIII------------STTHT 732
           +      ++P  ++ D   ++QI +N++ NAI FT  G ++++             T   
Sbjct: 250 LACHILPDVPVNLIGDPVRLQQILINLVGNAIKFTEKG-EVVVHVEKSTELTGGPETGTE 308

Query: 733 SNEEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
              +V     + DTG+G+   +++K  + F Q  +S   +  GTGLGL +++ +V+   G
Sbjct: 309 EGGKVELLFSIADTGIGIPQEKIDKMFEKFTQADSSTTRKHGGTGLGLSISRRLVEMMGG 368

Query: 791 KFYIFSTPAKGTLIEII 807
              + S   KGT     
Sbjct: 369 HIRLDSEVGKGTTATFT 385


>gi|322420713|ref|YP_004199936.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           M18]
 gi|320127100|gb|ADW14660.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           M18]
          Length = 635

 Score =  294 bits (752), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 85/480 (17%), Positives = 178/480 (37%), Gaps = 36/480 (7%)

Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403
           A+   L + +       + +        A    ++       L        +     H +
Sbjct: 180 ASDELLRILRLSREATNQES------FAAAVHPEDREKVIGQLLLCIEKGKSYEIE-HRL 232

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
            +   +   +  I     N   + +   G   +  + +  + ++  +  +L +I ++ SD
Sbjct: 233 LFEDGSCQWVYSIVEPLVNGSGQVVQVYGTTQDITERKRAEVELSNKTNELQAIFDSISD 292

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP-SVMNHYLTEILSLDLR 522
           GI + + EG +   N+    LF  P +    KP                 +   L+ +  
Sbjct: 293 GITVYDHEGRVQHHNQISPALF--PGKIGKGKPCRDVFHAELQGPPGLCPVERALAGER- 349

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIA 578
             +E   L   +  + L L +    +  +        +   ++SE + ++  L   +K+ 
Sbjct: 350 --VETSLLSMGEGRETLYLDVTATPIMDTIGEKTRALVFFRNVSEKRLQEMHLIQTEKM- 406

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN---QRFGPLGNPR---YIEYANYIDR 632
               S        ++HEI  PL ++ G +E +        G   +PR   +  Y   I R
Sbjct: 407 ----SSIGVLATGIAHEINNPLASVAGCAEGLLRRFNDTPGLSDDPRLDAFQHYLQVIVR 462

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
                  I+++LL   +   G        V L+  + E I L+      + + + TS   
Sbjct: 463 ESYRCKGIIDNLLSFGRKSDGLA----VNVDLNALLREIIELISHQPGFRHVSLATSLQQ 518

Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752
            +P +  D  +++Q+ +N+L NA       G + + T       + + +RD+G G+    
Sbjct: 519 GLPCVHGDPSALRQVCMNLLINAHQAITGEGSVEVLTCAPKGGMISVTIRDSGCGIPLDN 578

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
           L++   PF     +    G+G GLGL L  ++V  + G+  + S   +GT   ++ P+  
Sbjct: 579 LDRIWDPFFTTKEA----GKGIGLGLALTYSIVKRHHGEIQVKSKVGEGTEFTVLLPVSP 634



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 58/164 (35%), Gaps = 2/164 (1%)

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
                +   ++ +E +  +    + ++E    Q   + +    G    NR G+I   N  
Sbjct: 2   RESAEKGRYRDALEAKIEELSRFQAELEASRNQYALLYDFAPVGYFTFNRSGLIQKVNLT 61

Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
            ++L G     +  + F  F+      V  +YL  +     + T     L   K+   + 
Sbjct: 62  GARLLGLDRSHLAGRRFEDFVAGADRFVFVNYLASVFRNQGKMTCRLGLLQRDKQLLYVR 121

Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
           +  ++ +          + DI+E K  +  LS ++    K  S 
Sbjct: 122 IEAMVAESGDE--CLAVLVDITEKKLSERALSESEYNLAKAQSM 163



 Score = 65.0 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 59/518 (11%), Positives = 128/518 (24%), Gaps = 57/518 (11%)

Query: 56  DQNQESVSNTNYLDSENTFVFDPIPRTVR--------------FTWNIDAHGYLKEISEE 101
              +    +      E    F       R              FT+  +  G +++++  
Sbjct: 4   SAEKGRYRDALEAKIEELSRFQAELEASRNQYALLYDFAPVGYFTF--NRSGLIQKVNLT 61

Query: 102 LPKTIGNYAFKMIGMRLCDVSDILH-IDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVP 160
             + +G     + G R  D           N++  + + Q     +  L   +   LYV 
Sbjct: 62  GARLLGLDRSHLAGRRFEDFVAGADRFVFVNYLASVFRNQGKMTCRLGLLQRDKQLLYVR 121

Query: 161 IDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKE 220
           I+                    ++                +   +    +    S     
Sbjct: 122 IEAMVAESGDE--------CLAVLVDITEKKLSERALSESEYNLAKAQSMTHVGSWSFDP 173

Query: 221 -KYDIFSQQSPPPHLRMKNKVS---SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFH 276
              D+ +       LR+  + +   S       +D      +  L   +  S   +    
Sbjct: 174 LSGDVKASDELLRILRLSREATNQESFAAAVHPEDREKVIGQLLLCIEKGKSYEIEHRLL 233

Query: 277 TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE----NLTPETVDKCPIP 332
             + +          L N S +  +        +     +       N      D     
Sbjct: 234 FEDGSCQWVYSIVEPLVNGSGQVVQVYGTTQDITERKRAEVELSNKTNELQAIFDSISDG 293

Query: 333 FFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR 391
             VY   G + + N     L   K    I        +  A                 +R
Sbjct: 294 ITVYDHEGRVQHHNQISPALFPGK----IGKGKPCRDVFHAELQGPPGLCPVERALAGER 349

Query: 392 TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV 451
              +  +           +L +        +   E            + R+ +  + I+ 
Sbjct: 350 VETSLLS-----MGEGRETLYLDVTATPIMDTIGEKTRALVFFRNVSEKRLQEMHL-IQT 403

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP-SVMN 510
            ++ SI      G+      GI    N  ++ + G     + R   T  L  +       
Sbjct: 404 EKMSSI------GVLAT---GIAHEINNPLASVAGCAEGLLRRFNDTPGLSDDPRLDAFQ 454

Query: 511 HYLTEILSLDLRQ---TLEKITLGSTKEEKLLSLRIII 545
           HYL  I+    R        ++ G   +   +++ +  
Sbjct: 455 HYLQVIVRESYRCKGIIDNLLSFGRKSDGLAVNVDLNA 492


>gi|53713792|ref|YP_099784.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
 gi|52216657|dbj|BAD49250.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
          Length = 812

 Score =  294 bits (752), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 95/517 (18%), Positives = 193/517 (37%), Gaps = 39/517 (7%)

Query: 313 AYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
                 E L  +     P+   +Y+  G L   N   L +        I        L +
Sbjct: 311 ERVMHSEKLFHDIFTNIPVGLELYNKEGVLLDCNNRNLEIFGVGDKSRIVGLN----LFE 366

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW----NRENSLAMTFIPFEKANQFPEN 427
           +P ++ +       L                 +      R   + +        +     
Sbjct: 367 SPNMTRDIHES---LRAGRPGTFHLKYDFDEERRLFQSERRGVMDLDIRSLMLYDAEDNL 423

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG---IAIINREGIILSTNRAVSKL 484
                +  ++ +      K+         I + +  G   I +++  G      R   + 
Sbjct: 424 SNYLLVNIDNTERNNALSKVHDFENFFSIISDYSKVGYAKINLLDHTG---FAVRQWYRN 480

Query: 485 FGYPVEDILRKPFTVF--LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE--KLLS 540
            G   +  L     +F  +  +    +  +  +  +    +  +        +   +   
Sbjct: 481 LGESHDTPLADIIGIFSHMHPDDRKSVLDFYEKAKA-GTERFFDGDLRIRPADGSDRWNW 539

Query: 541 LR----IIIKKLPFSS-CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
           +     +   + P          +DI+  K+ + +L  A+  AE+ +  KS FLA +SHE
Sbjct: 540 IHKSSMVTAYQSPNPRLELVEVNYDITVQKETEAELRAARDKAEESNRLKSAFLANISHE 599

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           IRTPL AI+GFS+++              E+   I ++  L+L + +D++D+SKI++G  
Sbjct: 600 IRTPLNAIVGFSDLLM----TVDDPAEQEEFRRTIQKNNTLLLQLFSDIIDLSKIDAGSF 655

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSN 714
               +PV L +  +  +  ++    E  + ++    + +     AD   + Q+  N +SN
Sbjct: 656 EYMPKPVCLYQFCAMMVQKMRNKVPE-GVELQIDEDSPLDAWFSADSGYLNQVVTNFMSN 714

Query: 715 AIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           AI FT  G  I +     + +++ + V DTG+G++    E     F ++ +      +GT
Sbjct: 715 AIKFTHRG-TITVGYRIDARQQLEMFVEDTGIGISIENQEAVFDRFMKVDSF----VQGT 769

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
           GLGLPL K++++   G   + S   KG+      P +
Sbjct: 770 GLGLPLCKSIIEKMGGHIGVISELGKGSRFWFTLPAF 806



 Score = 47.3 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 43/301 (14%), Positives = 86/301 (28%), Gaps = 46/301 (15%)

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
           +L++P      A++   +   + T     A L  ++           I         E+ 
Sbjct: 233 ILNSPDELPPLAVRDREVLAENGTNSMMLAPL--MREEGVWGYMGIDIVDGYRKWNSEDY 290

Query: 429 PQNGIEPED----VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
                        ++ RI K ++         I      G+ + N+EG++L  N    ++
Sbjct: 291 QWFSSLANIISICMELRIIKERVMHSEKLFHDIFTNIPVGLELYNKEGVLLDCNNRNLEI 350

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL------EKITLGSTKEEKL 538
           FG   +              +P++       + +             E+  L  ++   +
Sbjct: 351 FGVGDKS----RIVGLNLFESPNMTRDIHESLRAGRPGTFHLKYDFDEERRLFQSERRGV 406

Query: 539 LSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESS------HKSDF 588
           + L I    L  +      Y L   D +E     +K+   +      S        K + 
Sbjct: 407 MDLDIRSLMLYDAEDNLSNYLLVNIDNTERNNALSKVHDFENFFSIISDYSKVGYAKINL 466

Query: 589 LARV-------------SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
           L                SH+  TPL  IIG    +      P      +++         
Sbjct: 467 LDHTGFAVRQWYRNLGESHD--TPLADIIGIFSHM-----HPDDRKSVLDFYEKAKAGTE 519

Query: 636 L 636
            
Sbjct: 520 R 520


>gi|294146647|ref|YP_003559313.1| signal transduction histidine kinase [Sphingobium japonicum UT26S]
 gi|292677064|dbj|BAI98581.1| signal transduction histidine kinase [Sphingobium japonicum UT26S]
          Length = 650

 Score =  294 bits (752), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 84/563 (14%), Positives = 180/563 (31%), Gaps = 31/563 (5%)

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
           P   +    L        +N+   + +     L      +   L      + +       
Sbjct: 94  PGAVTTTGLLTVIYAIVDVNIRGGSGEDGLAFLLVMVAANGVALKSTFWRARAERQGAYV 153

Query: 320 NLTPETVDKCPIP------FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
           N   E +            +     G + + N      T + S D +     L  L    
Sbjct: 154 NRLTEQLKLLTDGSVNYALYMTDVEGRVVHWNRGAERFTGWDSRDILNRPVSL--LYSQH 211

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
              ++N  +   L +   +C       H I+ +         +     +          +
Sbjct: 212 PDMEDNMAEAFALAKEHGSC---EFDCHFIRND-RTGFMQNCVVTALRDSKGRLQGFAKL 267

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
             +    R  +  ++    +L SILE   D + +++  G I   N    ++FGY + ++ 
Sbjct: 268 VRDVTAERAQEVALQEREAELRSILETAPDAVFVVDISGRIDYMNSTARRMFGYSLCELE 327

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS- 552
              F   L    P          +  D   +  +  +G  +      + +   K+  +  
Sbjct: 328 GAEFDHLLTGAQPPREVRDEPLHVESDRPLSYPRRLIGRRRNGSNFPIEMSFVKMEGAHE 387

Query: 553 -CYSLTMHDISEWKQEKNKLSHAKKIAEKESS--HKSDFLARVSHEIRTPLTAIIGFSE- 608
             Y+  + D++E    K +L   +      +         + ++HE+  PLTA+  + E 
Sbjct: 388 THYTAFIRDLTEQDATKARLELLQTEMLHGTRYSAMGAMASMLAHELNQPLTALAAYMEG 447

Query: 609 -VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
             I   R       +         +       I+  L D +     ++ +H       + 
Sbjct: 448 SSILLMRGQEADRQKLNRIFRSAAQEAVRAGAIMRRLRDFASDGEAQLEIH----DAQDV 503

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT--PSGGQI 725
           V  +++L+   A    + +    A     I AD   ++Q+  N+  NAI         ++
Sbjct: 504 VRSSLALIAAMAEAADVTVDMDVAPGTGSIFADPIQIQQVIGNLCRNAIDAMREEPERRL 563

Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
            +             V DTG G+     ++    F         + EGTG+GL + + +V
Sbjct: 564 TVRVAAADELTTHFLVSDTGSGIPPAIRDRIFDAFV------SSKEEGTGVGLSICRTIV 617

Query: 786 DANMGKFYIFSTPAKGTLIEIIF 808
           +A+ G+ ++  +   G+      
Sbjct: 618 EAHGGRIWLEPSV-TGSCFGFSL 639



 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 44/479 (9%), Positives = 115/479 (24%), Gaps = 37/479 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK---RQNT 142
            +  D  G +   +    +  G  +  ++   +  +    H D  +++ +         +
Sbjct: 172 LYMTDVEGRVVHWNRGAERFTGWDSRDILNRPVS-LLYSQHPDMEDNMAEAFALAKEHGS 230

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
                     + T       + AL          GF    +V     +       +  + 
Sbjct: 231 CEFDCHFIRNDRTGFMQNCVVTAL--RDSKGRLQGFAK--LVRDVTAERAQEVALQEREA 286

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYY---AHKDDVLKT 256
           +   + E       V      I    S         +     +  ++    A     ++ 
Sbjct: 287 ELRSILETAPDAVFVVDISGRIDYMNSTARRMFGYSLCELEGAEFDHLLTGAQPPREVRD 346

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL------SHRNHPS 310
           E   + +    S P +      N + +  +  F  ++   +  +                
Sbjct: 347 EPLHVESDRPLSYPRRLIGRRRNGSNFPIEMSFVKMEGAHETHYTAFIRDLTEQDATKAR 406

Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLL---LTKYKSVDDIEIAGGLS 367
           L     E  + T  +          +       A  +++    +   +  +       L+
Sbjct: 407 LELLQTEMLHGTRYSAMGAMASMLAHELNQPLTALAAYMEGSSILLMRGQEADRQK--LN 464

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
            +  +       A   +   R   +   A   +H  Q    +SLA+     E A+   + 
Sbjct: 465 RIFRSAAQEAVRAGAIMRRLRDFASDGEAQLEIHDAQDVVRSSLALIAAMAEAADVTVDM 524

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
               G      D    ++ +        + ++A  +       E  +     A  +L  +
Sbjct: 525 DVAPGTGSIFADPIQIQQVI---GNLCRNAIDAMRE-----EPERRLTVRVAAADELTTH 576

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
            +                   +               L             + L   + 
Sbjct: 577 FLVSDTGSGI----PPAIRDRIFDAFVSSKEEGTGVGLSICRTIVEAHGGRIWLEPSVT 631


>gi|193084072|gb|ACF09742.1| integral membrane sensor signal transduction histidine kinase
           [uncultured marine group III euryarchaeote AD1000-40-D7]
          Length = 752

 Score =  294 bits (752), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 85/246 (34%), Positives = 131/246 (53%), Gaps = 2/246 (0%)

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           +++K+ L  A + A+  +  KSDFLA +SHE+RTPL AIIG+SE++  +     G   Y 
Sbjct: 503 RKQKDDLKIAMQKAQTANQAKSDFLANMSHELRTPLNAIIGYSEMLIEEADDD-GLDTYS 561

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           E  + I+ SG  +L ++ND+LD+SKIE+GKM+LH E     E + +  +  +    + + 
Sbjct: 562 EDLSKINSSGEHLLTLINDILDLSKIEAGKMDLHIEEFDFAELLKQIEATAKPLVEKNKN 621

Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744
                      ++  D   ++QI  N+LSNA  FT  G  + +         +   V DT
Sbjct: 622 KFIIKCQTKKLKLKNDQTKLRQILFNMLSNAAKFTKEG-MVTLQINPEKKNHLKFEVLDT 680

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+GM   +LEK  + F Q  +S      GTGLGLP++K M +   G+  + S   KGT  
Sbjct: 681 GIGMNGKQLEKVFEEFTQAKSSTSKDYGGTGLGLPISKKMTEMMGGRMGVESKEGKGTTF 740

Query: 805 EIIFPL 810
            II P+
Sbjct: 741 SIIIPI 746


>gi|115379186|ref|ZP_01466305.1| two-component hybrid sensor and regulator [Stigmatella aurantiaca
            DW4/3-1]
 gi|115363806|gb|EAU62922.1| two-component hybrid sensor and regulator [Stigmatella aurantiaca
            DW4/3-1]
          Length = 1021

 Score =  294 bits (752), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 98/681 (14%), Positives = 223/681 (32%), Gaps = 65/681 (9%)

Query: 184  VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL 243
              +  +     A+                 +  +   K                  V   
Sbjct: 336  ARLEELVMCAPAVVSVTRGSGHRYVLCNPRYRQLLGGKDLTGMSAREAVPTLDGQGVFEA 395

Query: 244  TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF-EY 302
             +      +   ++++P+    +S +P +  F  ++      +     +   + +   + 
Sbjct: 396  MDRVYETGEPFISKEFPVRLGPKSDVPSEAFFDFVHQPLRDSEGRVEGIATFAFDVTDQV 455

Query: 303  LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEI 362
            L+ R    L       E      +       +       F ++         ++ +++  
Sbjct: 456  LARRTVEELLRDMARSEERFRAFLTATSEIIWDMPPRGGFDSDQPGWRAFTGQTREELLG 515

Query: 363  AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
             G L+ +    +L    A +  +             RL   + +      M         
Sbjct: 516  WGWLNAVHPEDRLGTELAWREAV---KAGKLFQNEVRL---RRHDGMYRHMHMRAVPVLE 569

Query: 423  QFPENMPQNGIEPEDVDTRI---NKRKMEIEVMQLCSILEATS------------DGIAI 467
                     GI  +    R     + ++     +  + L+  +            D + +
Sbjct: 570  LDGTVREWVGIHRDITRQREDEVERARLLSREQRHRAQLQGLAAASLAIGQAASLDAVLL 629

Query: 468  I----------------------NREGII--LSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            +                      +    I  +S +   S+  GY         F+  + +
Sbjct: 630  VITEEARELIGAHQSVTSLTTGEDGAQSISAVSLSEKYSQYRGYSP-RADGWGFSAQVCR 688

Query: 504  NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL-LSLRIIIKK--------LPFSSCY 554
                +           + R   +           L + L                    +
Sbjct: 689  TNQPLRMAQPELEAHPEWRSIGQSEAEHPPPRGWLAVPLVGSSGSNLGLIQLSDRHEGDF 748

Query: 555  SL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
            +      +  ++       + +     ++  +  K +FLA +SHE+RTPLTA++G+++++
Sbjct: 749  TAEDEAILVQLARMASVAIENARLMAESQAANRAKDEFLAVMSHELRTPLTAVLGWTQML 808

Query: 611  KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
            + +R  P    +     + I+R+   +  ++ D+LD+S+I +GK+ LH   V L   V  
Sbjct: 809  RTRRNDPAIQEKG---LDVIERNARSLAQLIEDVLDVSRILTGKLALHQRAVDLASVVQA 865

Query: 671  AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
            A+ +V+  A +K + +          +  D   ++Q+  N+L NA+ FTPSGG++ +   
Sbjct: 866  AVEVVRPRAEQKGVTLVMEAGVGGGMVTGDPGRLQQVFWNLLVNAVKFTPSGGRVEVRVE 925

Query: 731  HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
               N E  + ++D+G G+    L    + F Q   S      G GLGL + + +V+ + G
Sbjct: 926  -RGNAEWRVWIKDSGQGIRVEALPHLFERFWQADGSSTREHGGLGLGLAIVRHLVELHGG 984

Query: 791  KFYIFST-PAKGTLIEIIFPL 810
            +    S     G+   +  P+
Sbjct: 985  EVEAESAGLGHGSTFTVRLPV 1005



 Score = 65.0 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 46/514 (8%), Positives = 114/514 (22%), Gaps = 88/514 (17%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D    +  ++      IG     ++G  L      L   P                 T 
Sbjct: 49  LDRDWRITTLNGAAEGIIGRSRELLVGQNLWTALPELAPTPLGAAFHAAHASGERSTHTG 108

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
            +   G       +   +P           +  GIV   R  +          +  +   
Sbjct: 109 HYAPFG----AWFEARIIP-----------QDTGIVAFIRDVSPLHEAELERVRLVAAER 153

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
              +           +    +     R  ++V+   +  A     +      +    E+ 
Sbjct: 154 AAYERAERAAHRLTRLQEFTARLSAARSPDEVT--QQTVACTMAAVGATMAMVGVPTETL 211

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
              +         Q  ++     L +    S  +            F        +T+  
Sbjct: 212 RTLRVAACQGLPPQLLRECQVLPLDSILPMSVAFRGEPEWIESPEEFSARYPQLAKTM-- 269

Query: 329 CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388
                                                  +L   P + +   +  + L  
Sbjct: 270 --------------------------------GEDAAARSLASLPLVVEERVLGVLTLCY 297

Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
            +     A  R   +   R ++LA+                         D      + E
Sbjct: 298 PEPRTFPAEEREFLLALARHSALAL-------------------------DRARLLAEGE 332

Query: 449 IEVMQLCSILEATSDGIAIINREG-IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
            +  +L  ++      +++    G   +  N    +L G   +D+        +      
Sbjct: 333 TQRARLEELVMCAPAVVSVTRGSGHRYVLCNPRYRQLLG--GKDLTGMSAREAVPTLDGQ 390

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI----IIKKLPFSSCYS----LTMH 559
            +   +  +        + K        +  +        + + L  S            
Sbjct: 391 GVFEAMDRVYETGEP-FISKEFPVRLGPKSDVPSEAFFDFVHQPLRDSEGRVEGIATFAF 449

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
           D+++    +  +    +   +       FL   S
Sbjct: 450 DVTDQVLARRTVEELLRDMARSEERFRAFLTATS 483



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/115 (15%), Positives = 42/115 (36%), Gaps = 7/115 (6%)

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           +LE+ +D + +++R+  I + N A   + G   E ++ +     L +  P+ +       
Sbjct: 38  LLESLTDAVLVLDRDWRITTLNGAAEGIIGRSRELLVGQNLWTALPELAPTPLGAAFHAA 97

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571
            +   R T                 RI    +P  +     + D+S   + + + 
Sbjct: 98  HASGERSTHTG---HYAPFGAWFEARI----IPQDTGIVAFIRDVSPLHEAELER 145



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/243 (7%), Positives = 46/243 (18%), Gaps = 15/243 (6%)

Query: 93  GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGKT---T 148
                 +    + +G     + GM   +    L        +  + +    +  K     
Sbjct: 357 HRYVLCNPRYRQLLGGK--DLTGMSAREAVPTLDGQGVFEAMDRVYETGEPFISKEFPVR 414

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI-----VHVNRVDNDPRALGKRLDKK 203
           L P          D    P+        G   F       V   R   +      R +++
Sbjct: 415 LGPKSDVPSEAFFDFVHQPLRDSEGRVEGIATFAFDVTDQVLARRTVEELLRDMARSEER 474

Query: 204 FSHLHEIKKGHSSVEKE----KYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
           F                      D    ++     R +            +D +     +
Sbjct: 475 FRAFLTATSEIIWDMPPRGGFDSDQPGWRAFTGQTREELLGWGWLNAVHPEDRLGTELAW 534

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
                       +      +            +        E++      +     +   
Sbjct: 535 REAVKAGKLFQNEVRLRRHDGMYRHMHMRAVPVLELDGTVREWVGIHRDITRQREDEVER 594

Query: 320 NLT 322
              
Sbjct: 595 ARL 597



 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/390 (8%), Positives = 88/390 (22%), Gaps = 15/390 (3%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH-IDPNNHIGDLLKRQNTWY 144
            W++   G             G    +++G    +       +       + +K    + 
Sbjct: 486 IWDMPPRGGFDSDQPGWRAFTGQTREELLGWGWLNAVHPEDRLGTELAWREAVKAGKLFQ 545

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            +  L   +G   ++   + A+P+   +         GI        +      RL  + 
Sbjct: 546 NEVRLRRHDGMYRHM--HMRAVPVLELDGTVR--EWVGIHRDITRQREDEVERARLLSRE 601

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQ--------QSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256
                  +G ++         S         +     +     V+SLT        +   
Sbjct: 602 QRHRAQLQGLAAASLAIGQAASLDAVLLVITEEARELIGAHQSVTSLTTGEDGAQSISAV 661

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYT-KKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
                 +      P  + +        T +       +  +   +  +            
Sbjct: 662 SLSEKYSQYRGYSPRADGWGFSAQVCRTNQPLRMAQPELEAHPEWRSIGQSEAEHPPPRG 721

Query: 316 DEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
                L   +     +   +       +      +L +   +  + I             
Sbjct: 722 WLAVPLVGSSGSNLGL-IQLSDRHEGDFTAEDEAILVQLARMASVAIENARLMAESQAAN 780

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
              +    VM +       A       ++  R +                          
Sbjct: 781 RAKDEFLAVMSHELRTPLTAVLGWTQMLRTRRNDPAIQEKGLDVIERNARSLAQLIEDVL 840

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGI 465
           +       K  +    + L S+++A  + +
Sbjct: 841 DVSRILTGKLALHQRAVDLASVVQAAVEVV 870


>gi|283850700|ref|ZP_06367987.1| Hpt sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283573943|gb|EFC21916.1| Hpt sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 651

 Score =  294 bits (752), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 87/354 (24%), Positives = 166/354 (46%), Gaps = 31/354 (8%)

Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520
           + D + +++++GIIL    A + L G P   +   PF + +  +  + +      + +  
Sbjct: 16  SGDALLLLDKDGIILHATPAAAPLLGSPANQLTGLPFGIPVMCDGQAEV-----TLAATG 70

Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
               L + +L  +     L L              + + D++E +    +L+ A++ A+ 
Sbjct: 71  RVALLRRESLHESG----LPLT------------RVVLRDVTEHRAVLAELAAAREAAKA 114

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
               KS FLA ++HEIRTP+  I+G +E+    +       +  EY      S   +L +
Sbjct: 115 GERAKSHFLANITHEIRTPMIGILGMTELTLATKL----TEKQREYLEMARHSAQSLLTV 170

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-A 699
           +ND++D ++IE G + L   P  L   V E IS+ +  A +K ++I   F   +P++L  
Sbjct: 171 LNDIVDYARIEVGALELARTPFDLYATVEETISVFRPLAAKKHLVIGYQFIGAVPQVLVG 230

Query: 700 DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN-----EEVILRVRDTGVGMTNYELE 754
           D   ++QI +N++ NA+ FT +G  ++  T           ++ L VRDTG+G+   +++
Sbjct: 231 DASRLRQILINLVGNAVKFTDAGSVVLTITRADDGSERKAAQLHLAVRDTGIGIPRDKIQ 290

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
                F Q   S   R +G GLGL + + +V+   G + + S   +G++     
Sbjct: 291 AIFDSFTQADVSAARRYQGAGLGLAIVRHLVEMQGGLYSVESEEGQGSIFSFTL 344


>gi|228921316|ref|ZP_04084641.1| hypothetical protein bthur0011_23200 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228838330|gb|EEM83646.1| hypothetical protein bthur0011_23200 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 590

 Score =  294 bits (752), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 88/501 (17%), Positives = 176/501 (35%), Gaps = 41/501 (8%)

Query: 314 YFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                E      +   P+    +  +G+    N    ++T Y + + I     L  L   
Sbjct: 102 LLSRKEEELHTILQNMPVMVDALDYNGDFVLWNRECEIVTGYTAEEIIGNPNALQLLYPN 161

Query: 373 PKLSDNNAIKPVM----LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
                    K +         +      +  + TI W+                      
Sbjct: 162 HNYRHQIQKKFLTCGKNFRDWEMHLTCKNGEIKTIMWSN-----------ISEQFPVTGY 210

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
               +  +    +  + +++ +  +L  I +A  D   +   +G I+         F  P
Sbjct: 211 SYWAVGVDITHLKAIEEQLKQQTSELELIFKALPDLCFLTEDDGTIIDYKAGSPTKFYVP 270

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            E  + K F   L  +        + ++        +E           +         L
Sbjct: 271 AEAFMGKKFYEVLPSSVAQQFQEAINQVKEKGTNVIVEYPLTL---NGSIDFFEARCLPL 327

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                  + + DI+E K+ +  L+ +  +A           A V+HE+R PLT I GF +
Sbjct: 328 LHDK-IMIIVRDITERKKTEELLNKSDTLA-----AIGQLAAGVAHEVRNPLTVIKGFIQ 381

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
                    +       Y + +      +  I+ + L I+K +     ++ E  ++ +  
Sbjct: 382 ------LFQINKEDQERYFDLMLSEIERIEAILQEFLSIAKTD----EINTEKKNIYQIF 431

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
              +SL+   A    I +     +    I      +KQ+ +NIL N+I   P+GG+I I 
Sbjct: 432 KNVVSLMNTKAIMTNIQVELFTDDKDIIIECSENQLKQVFINILQNSIEAMPNGGEISIH 491

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
               +++ VI+ V D G+G+    +++  +PF         + +GTG+GL L+  +++++
Sbjct: 492 IKEINDDGVIIHVIDEGIGIPEERIKRLGEPFY------STKEKGTGIGLMLSYKIIESH 545

Query: 789 MGKFYIFSTPAKGTLIEIIFP 809
            G   I S    GT + I  P
Sbjct: 546 QGTISIMSEVGVGTTVTIHLP 566


>gi|167623151|ref|YP_001673445.1| hybrid sensory histidine kinase BarA [Shewanella halifaxensis
           HAW-EB4]
 gi|167353173|gb|ABZ75786.1| Hpt sensor hybrid histidine kinase [Shewanella halifaxensis
           HAW-EB4]
          Length = 929

 Score =  294 bits (752), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 88/256 (34%), Positives = 136/256 (53%), Gaps = 9/256 (3%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  AKK A++ S  KS+FLA +SHE+RTPL  +IGF++ +         +    +Y   
Sbjct: 286 ELDMAKKRAQEASRIKSEFLANMSHELRTPLNGVIGFAKQLLKTPL----HSSQQDYIRT 341

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I+RS   +L I+ND+LD SK+E+GKM L   P SL E + E ++L+   A EK +     
Sbjct: 342 IERSATNLLSIINDILDFSKLEAGKMVLENIPFSLRETLEETVTLLSSSAREKELEFVID 401

Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILR--VRDTG 745
             + IP  +  D     QI  N++ NAI FT  G  Q+ +       ++V LR  + DTG
Sbjct: 402 VDSRIPEDVTGDAMRFSQIITNLVGNAIKFTDKGSVQLKLQLEEIKEQKVHLRCEIIDTG 461

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+   +     + FGQ  +S   R  GTGLGL + K +++   G+   +S P +G+   
Sbjct: 462 IGIDKQQQSSLFQAFGQADSSISRRFGGTGLGLVITKRLINRMGGQIGCYSEPKQGSTFW 521

Query: 806 IIFPLYDTSHP-HDCI 820
              PL  + +P HD +
Sbjct: 522 FSLPLNISQYPIHDTL 537


>gi|167036596|ref|YP_001664174.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|167039248|ref|YP_001662233.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter sp. X514]
 gi|256751654|ref|ZP_05492529.1| histidine kinase [Thermoanaerobacter ethanolicus CCSD1]
 gi|300913888|ref|ZP_07131205.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter sp. X561]
 gi|307725427|ref|YP_003905178.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter sp. X513]
 gi|320115023|ref|YP_004185182.1| ATP-binding region ATPase domain-containing protein
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|166853488|gb|ABY91897.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter sp. X514]
 gi|166855430|gb|ABY93838.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|256749463|gb|EEU62492.1| histidine kinase [Thermoanaerobacter ethanolicus CCSD1]
 gi|300890573|gb|EFK85718.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter sp. X561]
 gi|307582488|gb|ADN55887.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter sp. X513]
 gi|319928114|gb|ADV78799.1| ATP-binding region ATPase domain protein [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
          Length = 470

 Score =  294 bits (752), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 60/237 (25%), Positives = 122/237 (51%), Gaps = 6/237 (2%)

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
           +   K  E+  + + DF+A VSHE+R+PLT+I G+ + I +   G +   +  +Y   + 
Sbjct: 235 NIMAKELEQLENMRKDFVANVSHELRSPLTSIQGYIDGILD---GTIPKEKACDYLKIVQ 291

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
           +    +  +++D L+++K+ESG+  LH     ++E +  A+   +    EK + ++  F 
Sbjct: 292 KETRRMSRLIDDFLEMTKLESGQFPLHKTEFDINELIRLAVIKFEKRIVEKDLTVKVDFE 351

Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751
            +   ++ D   ++Q+  N++ NAI F+   G I I T    + +V + ++D G+G++  
Sbjct: 352 EDRRIVIGDKDKIEQVLTNLIDNAIKFSKEKGIIHIFTEIKDD-KVFITIKDNGIGISPE 410

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           + E     F +   S+    +G GLGL + K +++A+  + ++ S   KGT      
Sbjct: 411 DQEHIWDRFYKADKSRGK--DGAGLGLYIVKRIINAHNEEIWVESEVGKGTAFTFTL 465


>gi|261211774|ref|ZP_05926061.1| signal transduction histidine kinase [Vibrio sp. RC341]
 gi|260839124|gb|EEX65756.1| signal transduction histidine kinase [Vibrio sp. RC341]
          Length = 1182

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 85/373 (22%), Positives = 159/373 (42%), Gaps = 20/373 (5%)

Query: 447 MEIEVMQLC---SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            ++   QL     +L+A    I I +  G ++ TN A  +       +            
Sbjct: 523 AKLSAEQLRWLTELLDAIPSMIFISDANGDVVLTNAAYRQNHQVCSNN----DCFNQRPD 578

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL--RIIIKKLPFSSCYSLTMHDI 561
            +   +   +    SL ++    + ++G         +  R I   +     Y    +DI
Sbjct: 579 CSFIDLPEEVNAEFSLIIQAPEARCSIG----GHYFHVIRRAISHPINHGQYYLTLFNDI 634

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           +E K+ +  L  + + A +    ++ FLA VSHE+RTP+ A++G  E++ ++    L + 
Sbjct: 635 TELKETEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGLMEILASR----LKSS 690

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
                      S   +   VND+LD SKIE+ ++ L     +L + +   +   +  A  
Sbjct: 691 ENQLLLTNAISSAERLKLHVNDILDFSKIEAEQLKLDIATYNLADELGPLLRGFEARAQL 750

Query: 682 KRILIRTS-FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
            ++        N +  +  D     QI  N+LSNAI FT  G ++++    T   ++ L 
Sbjct: 751 NQVEFDVIWLPNPLLVVDFDALRFNQIVTNLLSNAIKFTEQG-RVVVKVDVTPE-QLNLV 808

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V D+G GMT  +++    PF Q  ++   R  GTGLG+ +   +++   G+  I S   +
Sbjct: 809 VEDSGCGMTQQQIDSIFVPFVQADSTITRRFGGTGLGMSIVSNLIELMQGRIDITSQFGQ 868

Query: 801 GTLIEIIFPLYDT 813
           GT + +  P+   
Sbjct: 869 GTQVSVSIPVATQ 881


>gi|332709747|ref|ZP_08429706.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
 gi|332351574|gb|EGJ31155.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
          Length = 1135

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 77/267 (28%), Positives = 129/267 (48%), Gaps = 12/267 (4%)

Query: 554 YSLTMHDISEWKQEK---------NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
           + L++  I E +  +          KL       ++    K++FLA  SHE++TPL  II
Sbjct: 394 FILSLALILERRFAETRRLLQEYNQKLETKNAALQEMDQLKNEFLANTSHELKTPLNGII 453

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           G +E + +   G L  P      + I  SG  +  +VNDLLD S ++  ++NL  +PV +
Sbjct: 454 GIAESLIDGATGELSQPTSSN-LSLIVSSGKRLTQLVNDLLDFSALKHKQINLRIKPVGM 512

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724
            E     + L +     K++ +    +++IP + AD   ++QI  N++ NAI FT  G  
Sbjct: 513 REITEVVLLLSRPLVGNKKLQLINQVSSSIPPVDADENRLQQILYNLVGNAIKFTERG-T 571

Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
           I +S     N  + + V DTG+G+   +L++  + F Q   S   +  G GLGL + K +
Sbjct: 572 IKVSAEVV-NYYLKITVSDTGIGIPPDKLDRIFEAFEQGDGSINRKYGGVGLGLAVTKKL 630

Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPLY 811
           V  + G   + STP  G+      P+ 
Sbjct: 631 VQLHGGDIDVESTPNLGSRFSFTLPIS 657


>gi|326940399|gb|AEA16295.1| sporulation kinase [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 595

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 88/501 (17%), Positives = 176/501 (35%), Gaps = 41/501 (8%)

Query: 314 YFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                E      +   P+    +  +G+    N    ++T Y + + I     L  L   
Sbjct: 107 LLSRKEEELHTILQNMPVMVDALDYNGDFVLWNRECEIVTGYTAEEIIGNPNALQLLYPD 166

Query: 373 PKLSDNNAIKPVM----LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
                    K +         +      +  + TI W+                      
Sbjct: 167 HNYRHQIQKKFLTCGKNFRDWEMHLTCKNGEIKTIMWSN-----------ISEQFPVTGY 215

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
               +  +    +  + +++ +  +L  I +A  D   +   +G I+         F  P
Sbjct: 216 SYWAVGVDITHLKAIEEQLKQQTSELELIFKALPDLCFLTEDDGTIIDYKAGSPTKFYVP 275

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            E  + K F   L  +        + ++        +E           +         L
Sbjct: 276 AEAFMGKKFYEVLPSSVAQQFQEAINQVKEKGTNVIVEYPLTL---NGSIDFFEARCLPL 332

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                  + + DI+E K+ +  L+ +  +A           A V+HE+R PLT I GF +
Sbjct: 333 LRDK-IMIIVRDITERKKTEELLNKSDTLA-----AIGQLAAGVAHEVRNPLTVIKGFIQ 386

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
                    +       Y + +      +  I+ + L I+K +     ++ E  ++ +  
Sbjct: 387 ------LFQINKEDQERYFDLMLSEIERIEAILQEFLSIAKTD----EINTEKKNIYQIF 436

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
              +SL+   A    I +     +    I      +KQ+ +NIL N+I   P+GG+I I 
Sbjct: 437 KNVVSLMNTKAIMTNIQVELFTDDKDIIIECSENQLKQVFINILQNSIEAMPNGGEISIH 496

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
               +++ VI+ V D G+G+    +++  +PF         + +GTG+GL L+  +++++
Sbjct: 497 IKEINDDGVIIHVIDEGIGIPEERIKRLGEPFY------STKEKGTGIGLMLSYKIIESH 550

Query: 789 MGKFYIFSTPAKGTLIEIIFP 809
            G   I S    GT + I  P
Sbjct: 551 QGTISIMSEVGVGTTVTIYLP 571


>gi|228939751|ref|ZP_04102331.1| hypothetical protein bthur0008_24050 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228972633|ref|ZP_04133235.1| hypothetical protein bthur0003_24020 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228979221|ref|ZP_04139562.1| hypothetical protein bthur0002_24050 [Bacillus thuringiensis Bt407]
 gi|228780497|gb|EEM28723.1| hypothetical protein bthur0002_24050 [Bacillus thuringiensis Bt407]
 gi|228787074|gb|EEM35051.1| hypothetical protein bthur0003_24020 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228819910|gb|EEM65955.1| hypothetical protein bthur0008_24050 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
          Length = 590

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 88/501 (17%), Positives = 176/501 (35%), Gaps = 41/501 (8%)

Query: 314 YFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                E      +   P+    +  +G+    N    ++T Y + + I     L  L   
Sbjct: 102 LLSRKEEELHTILQNMPVMVDALDYNGDFVLWNRECEIVTGYTAEEIIGNPNALQLLYPD 161

Query: 373 PKLSDNNAIKPVM----LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
                    K +         +      +  + TI W+                      
Sbjct: 162 HNYRHQIQKKFLTCGKNFRDWEMHLTCKNGEIKTIMWSN-----------ISEQFPVTGY 210

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
               +  +    +  + +++ +  +L  I +A  D   +   +G I+         F  P
Sbjct: 211 SYWAVGVDITHLKAIEEQLKQQTSELELIFKALPDLCFLTEDDGTIIDYKAGSPTKFYVP 270

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            E  + K F   L  +        + ++        +E           +         L
Sbjct: 271 AEAFMGKKFYEVLPSSVAQQFQEAINQVKEKGTNVIVEYPLTL---NGSIDFFEARCLPL 327

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                  + + DI+E K+ +  L+ +  +A           A V+HE+R PLT I GF +
Sbjct: 328 LRDK-IMIIVRDITERKKTEELLNKSDTLA-----AIGQLAAGVAHEVRNPLTVIKGFIQ 381

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
                    +       Y + +      +  I+ + L I+K +     ++ E  ++ +  
Sbjct: 382 ------LFQINKEDQERYFDLMLSEIERIEAILQEFLSIAKTD----EINTEKKNIYQIF 431

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
              +SL+   A    I +     +    I      +KQ+ +NIL N+I   P+GG+I I 
Sbjct: 432 KNVVSLMNTKAIMTNIQVELFTDDKDIIIECSENQLKQVFINILQNSIEAMPNGGEISIH 491

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
               +++ VI+ V D G+G+    +++  +PF         + +GTG+GL L+  +++++
Sbjct: 492 IKEINDDGVIIHVIDEGIGIPEERIKRLGEPFY------STKEKGTGIGLMLSYKIIESH 545

Query: 789 MGKFYIFSTPAKGTLIEIIFP 809
            G   I S    GT + I  P
Sbjct: 546 QGTISIMSEVGVGTTVTIYLP 566


>gi|158339052|ref|YP_001520229.1| two-component hybrid sensor and regulator histidine kinase
            [Acaryochloris marina MBIC11017]
 gi|158309293|gb|ABW30910.1| two-component hybrid sensor and regulator histidine kinase
            [Acaryochloris marina MBIC11017]
          Length = 1564

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 107/626 (17%), Positives = 212/626 (33%), Gaps = 101/626 (16%)

Query: 278  INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS 337
             +       Q     Q  ++ +             A   E E      V       + ++
Sbjct: 664  ADQIGIALAQAELLEQEQAQRTQLQQQIIERQQADAALKESEERFQLAVKGSGDVLWDWN 723

Query: 338  -HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA 396
                 FY +P F  L  Y+                A    D+  +  + L       +  
Sbjct: 724  IVNKAFYLSPRFGQLLGYED----GELPCTLETWKAHICPDDQEMVSLALKHHLEHLVPY 779

Query: 397  SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM--EIEVMQL 454
                          L ++       +   +     G      +T+     +  ++   +L
Sbjct: 780  EVEYRLKSKAG-YYLWVSGRGQAIWDIEGKPTRMAGSIRNITETKAATEALKQQMRRAEL 838

Query: 455  --------------CSILEATSDGI-------------AIINRE-----------GII-- 474
                            I +AT   I              + +             G +  
Sbjct: 839  VEKITRKIRKNLDRQQIFKATVQEIGKTFQVSRCHLHTYVTDPNPHLPIVAEYLTGEVPS 898

Query: 475  -------LSTNRAVSKLFGYPV----EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
                   L  N    K+  +      ++ L  P    +           +  I +   ++
Sbjct: 899  MLGTDIQLENNPHARKVLRHDRAVASDNALGDPLIQPVSDICEQGQIQSMLAIRTS-YQR 957

Query: 524  TLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM-----------HDISEWKQEKNKLS 572
                + +    + K    +  I+ +   +                        Q    L 
Sbjct: 958  KANGVIVLQQCDRKRDWTQAEIELIEAVAGQVGIALAHGHLLEQEQQQRQTLTQNNTALK 1017

Query: 573  HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
             A+K A+  +  KS+FLA +SHEIRTP+ A+IG + ++ N       + +  ++   I  
Sbjct: 1018 QARKDADAANVAKSEFLATMSHEIRTPMNAVIGMTGLLLNTTL----DNQQRDFVETIRS 1073

Query: 633  SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
            SG+ +L ++ND+LD SKIE+GK+    +P SL   + E++ LV   A +K++ +   F  
Sbjct: 1074 SGDALLTLINDILDFSKIEAGKLEFEEQPFSLRACIEESLRLVAPRAIDKQLELAYLFDP 1133

Query: 693  NIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI------------- 738
            + P  I+ D+  ++QI +N+L+N + FT  G +++I     ++ ++              
Sbjct: 1134 STPNHIVGDVTRLRQILVNLLTNGVKFTEQG-EVVIYVQDITDTDITQPETTSQRKNFTD 1192

Query: 739  ---------LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
                       VRD+G+G+    +++  K F Q+  S   +  GTGLGL + +++     
Sbjct: 1193 IQNQRRLIQFEVRDSGIGIPADRMDRLFKSFSQVDASTTKKYGGTGLGLAICRSLSQMMG 1252

Query: 790  GKFYIFSTPAKGTLIEIIF--PLYDT 813
            G+ ++ S    G+        P+   
Sbjct: 1253 GRIWVESKAGVGSSFFFTIAVPVAPE 1278



 Score = 38.5 bits (88), Expect = 4.9,   Method: Composition-based stats.
 Identities = 40/495 (8%), Positives = 129/495 (26%), Gaps = 33/495 (6%)

Query: 97   EISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL--KRQNTWYGKTTLWPIEG 154
             +S    + +G    + +   L      +  D    +   L    ++    +        
Sbjct: 730  YLSPRFGQLLGYEDGE-LPCTLETWKAHICPDDQEMVSLALKHHLEHLVPYEVEYRLKSK 788

Query: 155  TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214
               Y+ +      I+    + +  R  G +             K+  ++   + +I +  
Sbjct: 789  AGYYLWVSGRGQAIWDIEGKPT--RMAGSIRNITETKAATEALKQQMRRAELVEKITRKI 846

Query: 215  SSVEKEKYDIFSQQSPPPHLRMKNKVSS---LTEYYAHKDDVLKTEKYPLLTSEESSLPE 271
                  +    +           ++      +T+   H   V +     + +   + +  
Sbjct: 847  RKNLDRQQIFKATVQEIGKTFQVSRCHLHTYVTDPNPHLPIVAEYLTGEVPSMLGTDIQL 906

Query: 272  QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI 331
            + + H   + +     +   + +++      +   +             +      K   
Sbjct: 907  ENNPHARKVLR-----HDRAVASDNALGDPLIQPVSDICEQGQIQSMLAIRTSYQRKANG 961

Query: 332  PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR 391
               +           + + L     ++ +    G++         +    + +    +  
Sbjct: 962  VIVLQQCDRKRDWTQAEIEL-----IEAVAGQVGIALAHGHLLEQEQQQRQTLTQNNTAL 1016

Query: 392  TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV 451
                  A    +      S  +  +  E        +   G+          +  +E   
Sbjct: 1017 KQARKDADAANV----AKSEFLATMSHEIRTPMNAVIGMTGLLLNTTLDNQQRDFVE--- 1069

Query: 452  MQLCSILEATSDGIAIINREGIILSTNR-AVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
                  + ++ D +  +  +  IL  ++    KL        LR      L    P  ++
Sbjct: 1070 -----TIRSSGDALLTLIND--ILDFSKIEAGKLEFEEQPFSLRACIEESLRLVAPRAID 1122

Query: 511  HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570
              L      D       +   +   + L++L     K        + + DI++    + +
Sbjct: 1123 KQLELAYLFDPSTPNHIVGDVTRLRQILVNLLTNGVKFTEQGEVVIYVQDITDTDITQPE 1182

Query: 571  LSHAKKIAEKESSHK 585
             +  +K      + +
Sbjct: 1183 TTSQRKNFTDIQNQR 1197


>gi|313676409|ref|YP_004054405.1| multi-sensor signal transduction histidine kinase [Marivirga
            tractuosa DSM 4126]
 gi|312943107|gb|ADR22297.1| multi-sensor signal transduction histidine kinase [Marivirga
            tractuosa DSM 4126]
          Length = 1040

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 102/763 (13%), Positives = 243/763 (31%), Gaps = 74/763 (9%)

Query: 85   FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCD-----VSDILHIDPNNHIGDLLKR 139
            F   +   G L E ++            +IG    D     +S     +   +    +  
Sbjct: 306  FIGFLSTEGILLEANDTAIGLADLKHEDVIGKYFWDCYWWQISPQTQKELKRNFQKAV-G 364

Query: 140  QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199
              T   +  +W    T   + I  +  PI+    +        +++V    +  + +   
Sbjct: 365  GETVSYEVEVWLSNKTP--ITILFSMKPIFDEFGK--------VIYVLPEGSPIQEIVDA 414

Query: 200  LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL-----RMKNKVSSLTEYYAHKDDVL 254
              K  S +     G      +  +    +     +      +           AH DD+ 
Sbjct: 415  RRKYKSVIEGTNVGTWEWNVQTGETEFNERWAEIVGYTLDELAPISIDTWMNLAHPDDLE 474

Query: 255  KTEKYPLLTSEE-------SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
            ++ +      E+        +  + +D H + +    K   +            +     
Sbjct: 475  ESGRRLNECFEKKAEYYDFEARMKHKDGHWVWVLDRGKVFEWTKEGKPLMMYGTHQDISE 534

Query: 308  HPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
                       E       +   I   +   +G     N +      Y S +++      
Sbjct: 535  RKQKEEALRISEEAFRGNFENAAIGMALLDQNGKWLKVNKNVCQTVGY-SKEELLELTFQ 593

Query: 367  STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
                     +D + ++ ++    +                    + +        ++   
Sbjct: 594  DITHPDDLHADLDLLQELV----EGKRNHYQMEKRYFHKEGH-IVYIILAVSMVKDERGN 648

Query: 427  NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLF 485
             +       +    +  + +++  + +  ++++AT++      ++EG IL TN  V ++ 
Sbjct: 649  VLYFISQIIDISKLKKTEIRLKALLAENKALMDATTEVAFVSTDKEGNILDTNIGVQRIL 708

Query: 486  GYPVEDILRKPFTVFLEQNTPS---------------VMNHYLTEILSLDLRQTLEKITL 530
            GY    I        L                         +L  + +            
Sbjct: 709  GYDKASITGSSIQNILFLEEEWNQIARELMGSSTKNYSTADFLHSLANNKQHNLG--EWT 766

Query: 531  GSTKEEKLLSLRII---IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
               K+  ++ + +    I +   +  Y     DIS+ K  + +L       E+++     
Sbjct: 767  MKGKDGIIVPVLLSVSEIIQDKNTDGYLFAATDISQIKSIQKEL-------EQKNEELEQ 819

Query: 588  FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
            F    +H+++ PL  I  +  +++ +    L + +   Y N    S   +  +++D+LD 
Sbjct: 820  FAYITAHDLKEPLRGITSYLSILQKKYSTHL-DEKANSYINIASHSAKRMKTLISDILDF 878

Query: 648  SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707
            SK       +  + V+L+  +       +   N+  +++  S   N+P +  D  S  Q+
Sbjct: 879  SK----TGVIEQKEVNLNSLLDTIFDNYRNDINQNNLVLSKS---NLPVLTGDTTSFIQL 931

Query: 708  ALNILSNAIHFTPSGGQIIIST-THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
              N++ NAI +   G +  +        +  +  V D G+G+     ++  + F ++ + 
Sbjct: 932  FTNLIDNAIKYQSKGNRAQVDIYGEEDEKNWVFTVADNGIGIKREHQDRVFEVFKRLHS- 990

Query: 767  QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
                  GTG+GL   K +V A  GK +  +  ++GT      P
Sbjct: 991  -NSEYSGTGIGLATCKKIVSAYGGKIWFEANQSQGTKFVFTIP 1032


>gi|190575485|ref|YP_001973330.1| putative two-component histidine kinase/response regulator fusion
            protein [Stenotrophomonas maltophilia K279a]
 gi|190013407|emb|CAQ47041.1| putative two-component histidine kinase/response regulator fusion
            protein [Stenotrophomonas maltophilia K279a]
          Length = 1168

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 120/651 (18%), Positives = 228/651 (35%), Gaps = 53/651 (8%)

Query: 185  HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244
                +  DP+    R   + +      +G                 P  L+ ++    L 
Sbjct: 404  TDALLRYDPKRRELRRWGRDAGADATMEGVIESMMTCDGDSLWLMLPAGLQQRDLDGRLR 463

Query: 245  EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
                +    L+  +  L                  L    + + F  +      +   L 
Sbjct: 464  RQLENGQRGLQQGQLNLDVECGPQDHIWLASSRGLLQWLPESERFQPVPGAPATAIHALH 523

Query: 305  HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSVDDI--E 361
                  +    D   +               +S G L   A           S   +  +
Sbjct: 524  VGRDGQVWLSEDGRLSRYR------------WSQGRLERQAVVGAEQGYPAISASGLVVD 571

Query: 362  IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
              G          +      + V LY       +   R HT+  + +    +   P    
Sbjct: 572  AQGVAWATSARGLVRVGADGQSVRLYGVHDGLPSQEFREHTLTMSGD-GHLVAGTPAGVV 630

Query: 422  NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA---TSDGIAIINREGIILS-- 476
               PE +  +          I + ++      L    +     +DG    +R+  I++  
Sbjct: 631  VFDPEQVRPSV---RRAPLVIERVEVRRNEQVLDLTHDTPLQIADG----DRDLRIVARL 683

Query: 477  -------TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
                   +N    +L GY  + +   P    L    P        +  S D   +  +  
Sbjct: 684  LSFADSASNSYRYRLAGYDPDWVEVGPAGERLFSRLPPGSYRLEVQARSADHVWSRVQSL 743

Query: 530  LGSTKEEKLLSLR----IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
                +     SL     +    L  +S ++       + +       H +++AE+ S+ K
Sbjct: 744  EFRVQPPWWRSLSGLLVLASIALLLTSWFAWLYRRRLQRRHAYQLALHKQELAEQASAAK 803

Query: 586  SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
            + FLA + HEIRTP+T ++G SE++         +P+   Y   I  +G  +L ++ND L
Sbjct: 804  TRFLANLGHEIRTPMTGVLGMSELLLASPL----DPQQRGYTQSIRHAGEHLLHLINDAL 859

Query: 646  DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS--FANNIPRILADLRS 703
            D+++IESG++ L  +P +L   + +  +L+   A +K +           + +   D   
Sbjct: 860  DLARIESGRLELQSKPFALSCLLQDLAALMGPLAAQKGLRFTLDNQLPPGL-QATGDAMR 918

Query: 704  VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI---LRVRDTGVGMTNYELEKAMKPF 760
            V+QI LN+LSNA+ FT  G    I+    S+ E+      VRDTG G++  + ++  + F
Sbjct: 919  VRQILLNLLSNAVKFTSRG---TITLHARSDGELRALHFEVRDTGPGISQEQQQRLFRRF 975

Query: 761  GQIPNSQQI-RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             Q   ++   +  G+GLGL + + +  A  G+  + S   +GT   +  PL
Sbjct: 976  EQADGARTAAQYGGSGLGLAICRELAQAMQGRIQVESQLGRGTCFGVTLPL 1026


>gi|159127383|gb|EDP52498.1| sensor histidine kinase/response regulator, putative [Aspergillus
            fumigatus A1163]
          Length = 1937

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 102/691 (14%), Positives = 217/691 (31%), Gaps = 85/691 (12%)

Query: 190  DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH 249
                      L+   S     +    +V+       S+       + +NKVS   +  A 
Sbjct: 783  TPAFELTSGALNSGESPGPAARGNCEAVDSYFNVHPSKSLRVAINQHRNKVSKSKKLAAS 842

Query: 250  KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
                           EESS  +        +            Q  S       S  +  
Sbjct: 843  TPTSPGRIWDNRSVDEESSAQDPNIVIASPIQDSKVPPVISPTQG-SNRHSSTNSIYSQL 901

Query: 310  SLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
                     + +    ++  P+  F+     G + + N  F    + +  +        +
Sbjct: 902  QREIPRPFSDTVAQLMLNSVPLHLFLAKPQSGEVIWTNSKFDAYRRSQPQEQKSRDPWQN 961

Query: 368  TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
                      ++  +         +      R+     +        F      +   E 
Sbjct: 962  ----IHPDERDHISREWANALRTGSQFTERVRVKRF-NDDSAYRWFIFRANPLLSSTGEV 1016

Query: 428  MPQNGIEPEDVDTRINKRKMEIEVMQL------CSILEATSDGIAIINREGIILSTNRAV 481
            +   G   +  +  + + K   E  +        +   +    +        ++  N   
Sbjct: 1017 LYWIGSFLDIHEQHVAELKAAQERQRFAIDAKYRAFSNSIPQVVFEATEHRGLIFVNEQW 1076

Query: 482  SKLFGYPVEDILRKPFTVFLEQNTPSV--------------------------------- 508
                G  +E+ L   F   +  +                                     
Sbjct: 1077 HLYTGQKLEEALDFGFAKHVHPDDLEKCGSLSVYIADLQNKTTADSTGKDGCTGTEKAGT 1136

Query: 509  --------MNHYLTEILSLDLRQT---------LEKITLGSTKEEKLLSLRIIIKKLP-- 549
                    +   L E++ L +                    +K        + + ++   
Sbjct: 1137 PGRQFSQGVTPALAELVRLGIASVQKDENGRVFYSTEIRIRSKGGDYRWHLVRLVRVETS 1196

Query: 550  ----FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
                  + +  T  DI++ K  + +L+ A +    +   K+ F + +SHEIRTPL  I+G
Sbjct: 1197 SFGSGEASWYGTCTDINDRKNLERELNKAMQQLNNQMESKTKFFSNMSHEIRTPLNGILG 1256

Query: 606  FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
                I + +             + I  S   + ++V+++LD+S++E+GKM+L      + 
Sbjct: 1257 TIPFILDTQLDT----DQRRMLDTIQNSSTNLRELVDNILDVSRVEAGKMSLVNSWFHVR 1312

Query: 666  EAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ 724
              V + I  +   A +K + +      N+P  ++ D   ++Q+ +N++ NA+ FT  G +
Sbjct: 1313 SVVEDVIDTISSRALDKGLELNYLMDVNVPPMVIGDRFRIRQVLINLVGNAVKFTTQG-E 1371

Query: 725  IIISTTHTSNEEV---------ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
            + I+     +  V            V DTG G +  + E+ M+ F Q+  +   +  G+G
Sbjct: 1372 VHINCGIYRDASVPLKETELLLNFDVVDTGKGFSARDAERLMQRFSQLGENASQQNAGSG 1431

Query: 776  LGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
            LGL L+K +V+ + G+    S   +G     
Sbjct: 1432 LGLFLSKQLVEMHGGRLTPSSKEGQGATFSF 1462


>gi|167767207|ref|ZP_02439260.1| hypothetical protein CLOSS21_01726 [Clostridium sp. SS2/1]
 gi|167711182|gb|EDS21761.1| hypothetical protein CLOSS21_01726 [Clostridium sp. SS2/1]
          Length = 1068

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 92/469 (19%), Positives = 184/469 (39%), Gaps = 41/469 (8%)

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
           +        +   T +A   R   I  N E              +  ++        +  
Sbjct: 341 DRGYIAERLKGLETELALECR---ITLNGEERW---VRNVVIRGEIEDSEYAMIFLRDIT 394

Query: 439 DTRINKRK---MEIEVMQLCSILEATS---DGIAIIN-REGIILSTNRAVSKL---FGYP 488
           + ++   +   M  +   +  ++++     D   + +         N     +    G+ 
Sbjct: 395 EAKVESARHLQMAADNASMEQLIQSIVRLVDRFVVCDLENDRYEFYNLNGQMIYKPLGFY 454

Query: 489 VEDILR-----KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST--KEEKLLSL 541
            +  ++     K        +     ++   ++ S +     E  ++     K    + L
Sbjct: 455 HDFQMQVLEKYKTLEPLEAIDILIAPDNIRKKLKSENDIYKFEYCSMDEKTYKIASYIPL 514

Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK----ESSHKSDFLARVSHEIR 597
                KL       L   D+++ K+ + +   A K A +     +  K++FL+ +SH+IR
Sbjct: 515 EWKNGKLEK---VLLASMDVTQEKKAEIESRQALKEAYRSAENANRAKTEFLSNMSHDIR 571

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TP+ AI+G + +            R IE  + I  S   +L ++N++LD+++IESGKM L
Sbjct: 572 TPMNAIVGLTAIAGANI---ESQDRVIECLSKITESSRHLLGLINEVLDMARIESGKMTL 628

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAI 716
             E  +L + V   I++ +   +E +        +     +  D   ++Q+ +N++SNAI
Sbjct: 629 AQEDFNLSDLVDNLITITKPVLDEHKHNFDIHINHIEHEAVCGDSLRIQQVFVNLMSNAI 688

Query: 717 HFTPSGGQIIISTTHTSNEE-----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
            +TP GG I  S     N           + D G+GM+    +    PF +  + +  R 
Sbjct: 689 KYTPDGGNITFSIEEKPNGFSELGCYEFTIEDNGIGMSPEFQKIMFDPFSRADDHRTTRV 748

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGT--LIEIIFPLYDTSHPHD 818
           +GTGLG+ +++ +V+   G   + ST  KGT   + I   L +     D
Sbjct: 749 QGTGLGMAISRNIVNLMNGTIKVDSTLHKGTKITVTIYLELQEKEKEQD 797


>gi|21232279|ref|NP_638196.1| histidine kinase/response regulator hybrid protein [Xanthomonas
            campestris pv. campestris str. ATCC 33913]
 gi|66767587|ref|YP_242349.1| histidine kinase/response regulator hybrid protein [Xanthomonas
            campestris pv. campestris str. 8004]
 gi|188990703|ref|YP_001902713.1| Two-component system sensor histidine kinase-response regulator
            hybrid protein [Xanthomonas campestris pv. campestris
            str. B100]
 gi|21114044|gb|AAM42120.1| histidine kinase/response regulator hybrid protein [Xanthomonas
            campestris pv. campestris str. ATCC 33913]
 gi|66572919|gb|AAY48329.1| histidine kinase/response regulator hybrid protein [Xanthomonas
            campestris pv. campestris str. 8004]
 gi|167732463|emb|CAP50657.1| Two-component system sensor histidine kinase-response regulator
            hybrid protein [Xanthomonas campestris pv. campestris]
          Length = 1186

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 122/702 (17%), Positives = 238/702 (33%), Gaps = 55/702 (7%)

Query: 149  LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
            LW  +G    +  D ++  +    +        G + +     D       L      L 
Sbjct: 358  LWQFDGNGRLLRYDTSSGALI---QTGIQAADLGTMQITTALEDS-RGKLWLASGEYGLS 413

Query: 209  EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
             +     ++E    +  ++ +          V +  E    + D+        +  +   
Sbjct: 414  RLDLRTGALEHFSDEGPAEAALWIGEPGDGTVWAAYEQVIQQRDLATGRLLETIDQQHPH 473

Query: 269  LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
               +     I      +              + + +              E L    V+ 
Sbjct: 474  GLTEVVSPQIRKGPDGRMWLSAF-----GGMYAWQAATRRFVSVPGLKTDETLQAFVVED 528

Query: 329  CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL-LDAPKLSDNNAIKPVMLY 387
                 ++Y  G+L   +    +  + + +   E    +    L+   +       P  L+
Sbjct: 529  A-THLWLYRAGSLERWSSDGAVWKRERRIRSAEGFPAMDAYGLERDGVGRLWMSGPRGLW 587

Query: 388  RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR------ 441
            R D     A  R   ++ +   SL  +      A                +DT+      
Sbjct: 588  RIDPRTPQARIRSFGVR-DGLTSLEFSHRCLMMARNGVLVGGTADGYTVLIDTQAPDVPS 646

Query: 442  --------INKRKMEIEVMQL--CSILEATSDGIAIINREGIILS---------TNRAVS 482
                        ++      L        + D     +R+  I            NR  +
Sbjct: 647  FTPAMRLETVSVQLADRRRMLPIRGGFSLSPD-----DRQLRINMRLLSFVDPMANRYRT 701

Query: 483  KL----FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
            +L     G+   D         L      +    +  + +    QTLE I        + 
Sbjct: 702  RLSGFDTGWVDHDASGMREFSSLPPGDYVLEMQGIDPLGNASKVQTLEFIVNPPWWRSRF 761

Query: 539  LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
                +++  +      +         + +     H +++AE+ S  K+ FLA + HE+RT
Sbjct: 762  GIAVMVLVGMMLGVLLAAAYRRRVRMRAQWQLAQHKRELAEQASQAKTRFLATLGHEVRT 821

Query: 599  PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
            P+T ++G SE++         + R   YA+ I  +G  +L +VND LD+++IE+GK+ L 
Sbjct: 822  PMTGVLGMSELLLQTPL----DGRQQGYASAIQSAGKHLLRLVNDALDLARIEAGKLALD 877

Query: 659  FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIH 717
                 L + + + + LV+  A +K++        ++PR +  D   V+QI LN+L NA+ 
Sbjct: 878  DRDFDLRQLIRQVVDLVRPSAEQKQLAFECHLDESLPRALHGDANRVQQILLNLLFNAVK 937

Query: 718  FTPSGGQIIIST--THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ-QIRGEGT 774
            FT  G Q+ +           + + V DTG GM+  +  +  + F Q    +   R  G+
Sbjct: 938  FTERG-QVRLRVLPLQAGGGGIRVEVSDTGPGMSEEQRGRLFQRFEQAEGGRTTTRHGGS 996

Query: 775  GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
            GLGL + + +  A  G   + S   +G    +  PL   S P
Sbjct: 997  GLGLAICRELAAAMGGSVGVSSALGQGACFVVELPLRWVSTP 1038


>gi|70999298|ref|XP_754368.1| sensor histidine kinase/response regulator [Aspergillus fumigatus
            Af293]
 gi|66852005|gb|EAL92330.1| sensor histidine kinase/response regulator, putative [Aspergillus
            fumigatus Af293]
          Length = 1937

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 102/691 (14%), Positives = 217/691 (31%), Gaps = 85/691 (12%)

Query: 190  DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH 249
                      L+   S     +    +V+       S+       + +NKVS   +  A 
Sbjct: 783  TPAFELTSGALNSGESPGPAARGNCEAVDSYFNVHPSKSLRVAINQHRNKVSKSKKLAAS 842

Query: 250  KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
                           EESS  +        +            Q  S       S  +  
Sbjct: 843  TPTSPGRIWDNRSVDEESSAQDPNIVIASPIQDSKVPPVISPTQG-SNRHSSTNSIYSQL 901

Query: 310  SLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
                     + +    ++  P+  F+     G + + N  F    + +  +        +
Sbjct: 902  QREIPRPFSDTVAQLMLNSVPLHLFLAKPQSGEVIWTNSKFDAYRRSQPQEQKSRDPWQN 961

Query: 368  TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
                      ++  +         +      R+     +        F      +   E 
Sbjct: 962  ----IHPDERDHISREWANALRTGSQFTERVRVKRF-NDDSAYRWFIFRANPLLSSTGEV 1016

Query: 428  MPQNGIEPEDVDTRINKRKMEIEVMQL------CSILEATSDGIAIINREGIILSTNRAV 481
            +   G   +  +  + + K   E  +        +   +    +        ++  N   
Sbjct: 1017 LYWIGSFLDIHEQHVAELKAAQERQRFAIDAKYRAFSNSIPQVVFEATEHRGLIFVNEQW 1076

Query: 482  SKLFGYPVEDILRKPFTVFLEQNTPSV--------------------------------- 508
                G  +E+ L   F   +  +                                     
Sbjct: 1077 HLYTGQKLEEALDFGFAKHVHPDDLEKCGSLSVYIADLQNKTTADSTGKDGCTGTEKAGT 1136

Query: 509  --------MNHYLTEILSLDLRQT---------LEKITLGSTKEEKLLSLRIIIKKLP-- 549
                    +   L E++ L +                    +K        + + ++   
Sbjct: 1137 PGRQFSQGVTPALAELVRLGIASVQKDENGRVFYSTEIRIRSKGGDYRWHLVRLVRVETS 1196

Query: 550  ----FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
                  + +  T  DI++ K  + +L+ A +    +   K+ F + +SHEIRTPL  I+G
Sbjct: 1197 SFGSGEASWYGTCTDINDRKNLERELNKAMQQLNNQMESKTKFFSNMSHEIRTPLNGILG 1256

Query: 606  FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
                I + +             + I  S   + ++V+++LD+S++E+GKM+L      + 
Sbjct: 1257 TIPFILDTQLDT----DQRRMLDTIQNSSTNLRELVDNILDVSRVEAGKMSLVNSWFHVR 1312

Query: 666  EAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ 724
              V + I  +   A +K + +      N+P  ++ D   ++Q+ +N++ NA+ FT  G +
Sbjct: 1313 SVVEDVIDTISSRALDKGLELNYLMDVNVPPMVIGDRFRIRQVLINLVGNAVKFTTQG-E 1371

Query: 725  IIISTTHTSNEEV---------ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
            + I+     +  V            V DTG G +  + E+ M+ F Q+  +   +  G+G
Sbjct: 1372 VHINCGIYRDASVPLKETELLLNFDVVDTGKGFSARDAERLMQRFSQLGENASQQNAGSG 1431

Query: 776  LGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
            LGL L+K +V+ + G+    S   +G     
Sbjct: 1432 LGLFLSKQLVEMHGGRLTPSSKEGQGATFSF 1462


>gi|46914623|emb|CAG21400.1| putative sensor histidine kinase/response regulator [Photobacterium
           profundum SS9]
          Length = 903

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 86/341 (25%), Positives = 157/341 (46%), Gaps = 17/341 (4%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           LF Y +   + +P +  +      V++      L + +   L             +++ +
Sbjct: 166 LFAYRLMQDVTRPISHMVS-----VVDRIRRGHLDIRIEGQLLGELDTLKNGINAMAISL 220

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
               +           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 221 SEYHIEMQQSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTP 280

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+  +   R          +Y   I++S N +L I+ND+LD SK+E+GK+ L  
Sbjct: 281 LNGVIGFTRQMLKTRLSS----SQHDYLLTIEKSANNLLTIINDILDFSKLEAGKLLLEN 336

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P    E++ E + L+   A+EK + +     + IP  ++ D   ++Q+  N++ NA+ F
Sbjct: 337 IPFDFTESLDEVMRLLAPSAHEKGLELTLKVDDRIPAGLIGDPLRIQQVVTNLIGNAVKF 396

Query: 719 TPSGG---QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T  G     + +  +   + E+   VRDTG+G++  +  +  + F Q   S   R  GTG
Sbjct: 397 TERGNIDVSVELKASKDESIELQFTVRDTGIGISERQQAQLFQAFSQADASISRRYGGTG 456

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           LGL + + +V    G+  + S   +G+       +  T  P
Sbjct: 457 LGLVITQKLVTQMGGEISLTSRLHQGSTFWFSLSMLKTDLP 497


>gi|265764068|ref|ZP_06092636.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
 gi|263256676|gb|EEZ28022.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
          Length = 812

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 95/517 (18%), Positives = 194/517 (37%), Gaps = 39/517 (7%)

Query: 313 AYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
                 E L  +     P+   +Y+  G L   N   L +      + I        L +
Sbjct: 311 ERVMHSEKLFHDIFTNIPVGLELYNKEGVLLDCNNRNLEIFGVGDKNRIVGLN----LFE 366

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW----NRENSLAMTFIPFEKANQFPEN 427
           +P ++ +       L                 +      R   + +        +     
Sbjct: 367 SPNMTRDIHES---LRAGRPGTFHLKYDFDEERRLFQSERRGVMDLDIRSLMLYDAEDNL 423

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG---IAIINREGIILSTNRAVSKL 484
                +  ++ +      K+         I + +  G   I +++  G      R   + 
Sbjct: 424 SNYLLVNIDNTERNNALSKVHDFENFFSIISDYSKVGYAKINLLDHTG---FAVRQWYRN 480

Query: 485 FGYPVEDILRKPFTVF--LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE--KLLS 540
            G   +  L     +F  +  +    +  +  +  +    +  +        +   +   
Sbjct: 481 LGESHDTPLADIIGIFSHMHPDDRKSVLDFYEKAKA-GTERFFDGDLRIRPADGSDRWNW 539

Query: 541 LR----IIIKKLPFSS-CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
           +     +   + P          +DI+  K+ + +L  A+  AE+ +  KS FLA +SHE
Sbjct: 540 IHKSSMVTAYQSPNPRLELVEVNYDITVQKETEAELRAARDKAEESNRLKSAFLANISHE 599

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           IRTPL AI+GFS+++              E+   I ++  L+L + +D++D+SKI++G  
Sbjct: 600 IRTPLNAIVGFSDLLM----TVDDPAEQEEFRRTIQKNNTLLLQLFSDIIDLSKIDAGSF 655

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSN 714
               +PV L +  +  +  ++    E  + ++    + +     AD   + Q+  N +SN
Sbjct: 656 EYMPKPVCLYQFCAMMVQKMRNKVPE-GVELQIDEDSPLDAWFSADSGYLNQVVTNFMSN 714

Query: 715 AIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           AI FT  G  I +     + +++ + V DTG+G++    E     F ++ +      +GT
Sbjct: 715 AIKFTHQG-TITVGYRIDARQQLEMFVEDTGIGISIENQEAVFDRFMKVDSF----VQGT 769

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
           GLGLPL K++++   G   + S   KG+      P +
Sbjct: 770 GLGLPLCKSIIEKMGGHIGVISELGKGSRFWFTLPAF 806



 Score = 47.3 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 44/302 (14%), Positives = 87/302 (28%), Gaps = 48/302 (15%)

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
           +L++P      A++   +   + T     A L  ++           I         E+ 
Sbjct: 233 ILNSPDELPPLAVRDREVLAENGTNSMMLAPL--MREEGVWGYMGIDIVDGYRKWNSEDY 290

Query: 429 PQNGIEPED----VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
                        ++ RI K ++         I      G+ + N+EG++L  N    ++
Sbjct: 291 QWFSSLANIISICMELRIIKERVMHSEKLFHDIFTNIPVGLELYNKEGVLLDCNNRNLEI 350

Query: 485 FGY-PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL------EKITLGSTKEEK 537
           FG      I+           +P++       + +             E+  L  ++   
Sbjct: 351 FGVGDKNRIVGLNLF-----ESPNMTRDIHESLRAGRPGTFHLKYDFDEERRLFQSERRG 405

Query: 538 LLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESS------HKSD 587
           ++ L I    L  +      Y L   D +E     +K+   +      S        K +
Sbjct: 406 VMDLDIRSLMLYDAEDNLSNYLLVNIDNTERNNALSKVHDFENFFSIISDYSKVGYAKIN 465

Query: 588 FLARV-------------SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
            L                SH+  TPL  IIG    +      P      +++        
Sbjct: 466 LLDHTGFAVRQWYRNLGESHD--TPLADIIGIFSHM-----HPDDRKSVLDFYEKAKAGT 518

Query: 635 NL 636
             
Sbjct: 519 ER 520


>gi|309789904|ref|ZP_07684481.1| PAS sensor protein [Oscillochloris trichoides DG6]
 gi|308228036|gb|EFO81687.1| PAS sensor protein [Oscillochloris trichoides DG6]
          Length = 749

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 104/551 (18%), Positives = 202/551 (36%), Gaps = 63/551 (11%)

Query: 313 AYFDEGENLTPETVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
              D    +  E +   P    V +   +    NP  + L        I     LS L D
Sbjct: 208 RVIDLAPLVEREVLSALPDGMVVLNRQMVVSEINPEAIKLLHLPPGQMI-GRSLLSLLAD 266

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
            P++S       V     D     +      +  + +   A+              +   
Sbjct: 267 QPQMS------QVRNVLVDG---PSPQTHQIVIGDGDTLQALELRLRPLRASNDARVGML 317

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
            +  +  +    ++   + V +L S+L   +      N    ++        +  Y   +
Sbjct: 318 LLLRDVSERAKAEQARAMHVAEL-SLLNHVARAANSANETERLIRV--IAETIVEYGPWE 374

Query: 492 ----------------------ILRKPF---------------------TVFLEQNTPSV 508
                                  + + +                     +   + + P  
Sbjct: 375 RVAVGLLPKIGGQLDIVADFGTHMGQSYEGSLVRNQVGTELLALMMAGKSSQFDLDDPPA 434

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568
               + +++  +  Q +  I L        + +       P+S         I E   + 
Sbjct: 435 AESAIVQLMRREELQHILVIPLLHQANSLGVLVLGNSLSRPYSPALLHLAETIGELITDA 494

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
           +  +   +        KS FLA VSHE+RTPLT+IIG++E+++   +GPLG  R  E   
Sbjct: 495 SVRTRLYEEVRTADRLKSAFLATVSHELRTPLTSIIGYTEMLQRGLYGPLG-ERMGEPLG 553

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
           ++  +   +L ++ D+LD S++E+G + +   PV     +       Q    ++ + +  
Sbjct: 554 HMRTASGTLLRLITDILDFSRMEAGHLKVDLTPVEPLRTIRSVAGQFQPQILQRSLALDL 613

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748
              +++P I A+   ++Q+  N++ NAI FT  GG I +S  H ++  + + VRDTG+G+
Sbjct: 614 DLPDHLPYIYANSMRLEQVLTNLIGNAIKFTDQGG-ITVSAHHHAD-RLRISVRDTGIGI 671

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            +   +     F +I         G GLGL +++ +V+   G   + STP +G+   I  
Sbjct: 672 AHEHQDAIFLEFRRIEQ-IGRHAGGAGLGLAISRRLVELMGGTIGLHSTPGEGSTFFIDM 730

Query: 809 PLYDTSHPHDC 819
           P+  T  P D 
Sbjct: 731 PICPT--PADA 739


>gi|253702310|ref|YP_003023499.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21]
 gi|251777160|gb|ACT19741.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21]
          Length = 845

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 93/664 (14%), Positives = 187/664 (28%), Gaps = 48/664 (7%)

Query: 181 FGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF-----SQQSPPPHLR 235
           F I                +   +  +         +                    + R
Sbjct: 66  FLISRYLDRLRAAERERLEVLDNYRTIFNATNEAIFLHDIDSGSILDVNQRVLEMYGYTR 125

Query: 236 MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTI--NLNQYTKKQYFGTL- 292
            +     +  + A      +TE    L     + P+   + +   N  Q+  +     + 
Sbjct: 126 EEALAGEIGMFSAGSAPYSQTEAVAKLRKAADAGPQVFQWLSKKKNGEQFWAEVSLKRIT 185

Query: 293 -QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLL 350
            +                       E         +  P               +  +  
Sbjct: 186 TRGKLAIIAVVRDVTERKRQEDALKEKNAHLRFFFEYAPASLAMFDRKMRYMQVSRRWQS 245

Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
           +             GLS     P++      K +         I   A            
Sbjct: 246 MYGLAD----RNLIGLSHYDVFPEI--TERWKELHRRGLAGEIIREEAD--RFVRADGTV 297

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470
             + +                    +  + ++ +  +      L  + +     +   + 
Sbjct: 298 QWVRWEIRPWYEAVERVGGIVIFTEDITERKLIEDALSANERFLRMLTDQLPGMVGYWDS 357

Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530
           E      N+A  + FG     +        L +   +    Y+   L+    Q  E+  +
Sbjct: 358 ELRCTFANKAYQEWFGKSPAQMNGITLPELLGEELFAQNEPYVRRALA-GEPQRFERTLV 416

Query: 531 GSTKEEKLLSLRIIIKKLPF-SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS--D 587
               E+K      I  K+   +  + + + D++E K  + +    +   ++    +S   
Sbjct: 417 KPGVEKKYTWAHYIPDKVGGVTKGFYVLVSDVTELKLAEEEKVRLESQLQQAQKLESVGR 476

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
               V+H+    LT I+G +++   +                I ++      +   LL  
Sbjct: 477 LAGGVAHDFNNLLTVILGLAQLGIREL---EPGDPVRGRLEGIRQAAEKSAALTQQLLGF 533

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707
           ++    K  +    + L+  V + +S+++     + I +    A  + R+  D   + QI
Sbjct: 534 AR----KQTIAPIVLDLNHTVEQMLSMLR-RLVGENIEVIWRPAPELWRVKMDPSQLDQI 588

Query: 708 ALNILSNAIHFTPSGGQIIIST--------------THTSNEEVILRVRDTGVGMTNYEL 753
             N+  NA       G+I I T                   E V L V D G GM    +
Sbjct: 589 LANLCVNARDAISDVGRITIETGNATLGKEYCASHFGFVPGEYVQLTVSDDGCGMEKEMI 648

Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
               +PF          G+GTGLGL     +V  N G    +S P KGT  +I  P +D 
Sbjct: 649 AHIFEPFFTTKKL----GKGTGLGLATLYGIVKQNNGFINTYSEPGKGTAFKIYLPRHDA 704

Query: 814 SHPH 817
           + P 
Sbjct: 705 AKPQ 708



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 57/157 (36%), Gaps = 3/157 (1%)

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKL 484
             +    I       R  +R+    +    +I  AT++ I + + + G IL  N+ V ++
Sbjct: 61  AALLFFLISRYLDRLRAAERERLEVLDNYRTIFNATNEAIFLHDIDSGSILDVNQRVLEM 120

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
           +GY  E+ L     +F   + P      + ++             L   K  +     + 
Sbjct: 121 YGYTREEALAGEIGMFSAGSAPYSQTEAVAKLRKAADAGPQVFQWLSKKKNGEQFWAEVS 180

Query: 545 IKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAE 579
           +K++           + D++E K++++ L        
Sbjct: 181 LKRITTRGKLAIIAVVRDVTERKRQEDALKEKNAHLR 217



 Score = 70.4 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/390 (8%), Positives = 89/390 (22%), Gaps = 29/390 (7%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144
           F  +ID+ G + ++++ + +  G    + +   +   S              L++     
Sbjct: 101 FLHDIDS-GSILDVNQRVLEMYGYTREEALAGEIGMFSAGSAPYSQTEAVAKLRKAADAG 159

Query: 145 GKTTLW---PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
            +   W      G   +  + L  +    +           +V             K  +
Sbjct: 160 PQVFQWLSKKKNGEQFWAEVSLKRITTRGK------LAIIAVVRDVTERKRQEDALKEKN 213

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPP--PHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
                  E      ++   K             +      +  L+ Y    +   + ++ 
Sbjct: 214 AHLRFFFEYAPASLAMFDRKMRYMQVSRRWQSMYGLADRNLIGLSHYDVFPEITERWKEL 273

Query: 260 PLLT-SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
                + E    E + F   +      +          +     +      +     ++ 
Sbjct: 274 HRRGLAGEIIREEADRFVRADGTVQWVRWEIRPWYEAVERVGGIVIFTEDITERKLIEDA 333

Query: 319 ----ENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
               E       D+ P     +       +AN ++                 L  LL   
Sbjct: 334 LSANERFLRMLTDQLPGMVGYWDSELRCTFANKAYQEWFGKSPAQM--NGITLPELLGEE 391

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
             + N    P +                T+                             +
Sbjct: 392 LFAQNE---PYVRRALAGEPQRFE---RTLVKPGVEKKYTWAHYIPDKVG-GVTKGFYVL 444

Query: 434 EPEDVDTRINKRKMEIEVMQLCSI--LEAT 461
             +  + ++ + +      QL     LE+ 
Sbjct: 445 VSDVTELKLAEEEKVRLESQLQQAQKLESV 474



 Score = 45.8 bits (107), Expect = 0.033,   Method: Composition-based stats.
 Identities = 23/254 (9%), Positives = 57/254 (22%), Gaps = 9/254 (3%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D      ++S       G     +IG+   DV   +           L  +         
Sbjct: 231 DRKMRYMQVSRRWQSMYGLADRNLIGLSHYDVFPEITERWKELHRRGLAGEIIREEADRF 290

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
              +GT  +V  ++   P Y       G   F                   ++    L +
Sbjct: 291 VRADGTVQWVRWEI--RPWYEAVERVGGIVIF--TEDITERKLIEDALSANERFLRMLTD 346

Query: 210 IKKGHSSVEKEKYDIFSQQSP--PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
              G       +               +   +++ +T      +++    +  +  +   
Sbjct: 347 QLPGMVGYWDSELRCTFANKAYQEWFGKSPAQMNGITLPELLGEELFAQNEPYVRRALAG 406

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
                E        +                +  +    +  +     +E +        
Sbjct: 407 EPQRFERTLVKPGVEKKYTWAHYIPDKVGGVTKGFYVLVSDVTELKLAEEEKVRLES--- 463

Query: 328 KCPIPFFVYSHGNL 341
           +      + S G L
Sbjct: 464 QLQQAQKLESVGRL 477


>gi|90419109|ref|ZP_01227020.1| signal transduction histidine kinase [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90337189|gb|EAS50894.1| signal transduction histidine kinase [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 653

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 102/355 (28%), Positives = 166/355 (46%), Gaps = 7/355 (1%)

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
            S+L+A    +  ++  G++ + + A     G   + +  +     +      V    L 
Sbjct: 266 ASLLDA---ALISLDARGMVTAVSPATLTGIGQERDTVTGRSLVDLVHVGDRVVFLQALA 322

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA 574
           +       Q +         +       + ++    +    + +   +    E   L  A
Sbjct: 323 DARRT--AQVVTAAARLRRGDGTYHPAGLRLRGCAETGAVHVAVAVAANAAGESADLQTA 380

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
              A + S+ KS FLA VSHE+RTPL AIIGFS+++  + FG   + R  EY   I +SG
Sbjct: 381 LDAANQSSAAKSQFLAAVSHELRTPLNAIIGFSDILDQEFFGGFESDRQKEYVGLIRQSG 440

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
             +L +VN LLD+SKIE+G+  L  E   L EA+  A+ +V+  A  K + +        
Sbjct: 441 QHLLSVVNSLLDVSKIEAGRYELVPEAFGLGEAMDLAVDVVREEARRKDLRLDVRPGCRD 500

Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELE 754
             I AD R+  QI LN+LSNA+ FT  G  + +  +      V   V DTG+G+   ++E
Sbjct: 501 EEITADRRACHQILLNLLSNALKFTEVG-VVTLE-SRRVGAMVEFSVSDTGIGIAESDIE 558

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +  +PF Q+ +    R +GTGLGL L K + + + G   I S P  GT++ +  P
Sbjct: 559 RLGRPFVQVSSGTTRRYQGTGLGLSLVKGLAELHGGDMTIRSQPGVGTMVTVRLP 613



 Score = 37.7 bits (86), Expect = 7.9,   Method: Composition-based stats.
 Identities = 40/376 (10%), Positives = 83/376 (22%), Gaps = 13/376 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147
           +DA G +  +S      IG     + G  L D+  +         + D  +         
Sbjct: 276 LDARGMVTAVSPATLTGIGQERDTVTGRSLVDLVHVGDRVVFLQALADARRTAQVVTAAA 335

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
            L   +GT     + L                         +     A  +    K   L
Sbjct: 336 RLRRGDGTYHPAGLRLRGCAETGAVHVAVAVAANAAGESADLQTALDAANQSSAAKSQFL 395

Query: 208 HEIKKGHSSVEKEKYDIFSQ-QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
             +     +                      ++              L +    LL   +
Sbjct: 396 AAVSHELRTPLNAIIGFSDILDQEFFGGFESDRQKEYVGLIRQSGQHLLSVVNSLLDVSK 455

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
                 E                  ++  ++     L  R          +        +
Sbjct: 456 IEAGRYELVPEAFGLGEAMDLAVDVVREEARRKDLRLDVRPGCRDEEITADRRACHQILL 515

Query: 327 DKCPIPFFVYSHGNLFYANPSFLLLTKYK-SVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
           +           G +   +     + ++  S   I IA      L  P +  ++      
Sbjct: 516 NLLSNALKFTEVGVVTLESRRVGAMVEFSVSDTGIGIAESDIERLGRPFVQVSSGTTRRY 575

Query: 386 LYRSDR-TCIAASARLH----TIQWNRENSLAMTFIPFEKANQFPENMP-----QNGIEP 435
                  + +   A LH    TI+        +T        +  E+ P        +  
Sbjct: 576 QGTGLGLSLVKGLAELHGGDMTIRSQPGVGTMVTVRLPAVYVEGAESTPNLKENVVALSD 635

Query: 436 EDVDTRINKRKMEIEV 451
               T +  + +E   
Sbjct: 636 ARTQTNLPPQTLEARR 651


>gi|330957172|gb|EGH57432.1| PAS protein [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 595

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 89/427 (20%), Positives = 172/427 (40%), Gaps = 28/427 (6%)

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK--R 445
            + R      A         E    +T  P   A +      + GI  E +         
Sbjct: 193 IARRFGAPIEALAKAADRIGEGDYEVTL-PISSAAEMNLLTRRFGIMAEALRQHQATNVD 251

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           ++     +L ++L++  DG+ +I+R+G +   N    +  G+    + +           
Sbjct: 252 ELLAGQQRLQAVLDSIDDGLLMIDRQGHLEHLNPVAQRQLGWDESCLGQSLGEALGRPEL 311

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISE 563
              ++  L         + L         E +LL+  +              + +HD++E
Sbjct: 312 DEQLHLVLRGGTLERAPEDLAIEI---DSESRLLTYSMTPVSHTKGHILGAVMVLHDVTE 368

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            +  +                +S+F+ R SHE+RTP+T  +  +  +  +R       R 
Sbjct: 369 QRAFE--------------RVRSEFVLRASHELRTPVTG-MHMAFGLLQERLHFAPESRE 413

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            +  N +      ++ ++NDLL+ S+ ++G   L   P S++  + EA +  +  A E+ 
Sbjct: 414 ADLLNTVTEEMQRLMQLINDLLNFSRYQNGLQKLKLAPCSVEALLEEAKARFEEQALEQD 473

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
           I++       +PR+ AD   ++++  N+L NA+  TP  G I +       E  I+ V D
Sbjct: 474 IVLMLEVQEPMPRLHADQSQLERVLDNLLDNALRHTPPKGLIRLQ-ARRHGERAIISVED 532

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
            G G+   +  +  +PF Q+      +  G GLGL L K +V  + G+  ++S P +GT 
Sbjct: 533 NGEGIAYGQQGRIFEPFVQV----GRKKGGAGLGLALCKEIVQLHGGRMGVYSRPGQGTQ 588

Query: 804 IEIIFPL 810
             +  PL
Sbjct: 589 FYMALPL 595



 Score = 44.2 bits (103), Expect = 0.083,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 69/241 (28%), Gaps = 9/241 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G+L+ ++    + +G      +G  L +      +D       L+ R  T      
Sbjct: 274 IDRQGHLEHLNPVAQRQLGWD-ESCLGQSLGEALGRPELDEQ---LHLVLRGGTLERAPE 329

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
              IE  +    +  +  P+        G     ++H          +  R +      H
Sbjct: 330 DLAIEIDSESRLLTYSMTPVSHTKGHILGA--VMVLHDVTEQRAFERV--RSEFVLRASH 385

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           E++   + +      +  +    P  R  + ++++TE    +   L  +       +   
Sbjct: 386 ELRTPVTGMHMAFGLLQERLHFAPESREADLLNTVTE-EMQRLMQLINDLLNFSRYQNGL 444

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
              +    ++       K  F                   P L A   + E +    +D 
Sbjct: 445 QKLKLAPCSVEALLEEAKARFEEQALEQDIVLMLEVQEPMPRLHADQSQLERVLDNLLDN 504

Query: 329 C 329
            
Sbjct: 505 A 505


>gi|226314891|ref|YP_002774787.1| sporulation kinase [Brevibacillus brevis NBRC 100599]
 gi|226097841|dbj|BAH46283.1| sporulation kinase [Brevibacillus brevis NBRC 100599]
          Length = 478

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 101/499 (20%), Positives = 197/499 (39%), Gaps = 38/499 (7%)

Query: 316 DEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
           D    L        P   F++   G     N +   L  + S + +     +  +L + +
Sbjct: 2   DTQIQLYTSLFHNNPDAVFMFDMQGRFTGVNAAGEALVGFTSQELLR--MQIWEILASTE 59

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
             D+   + +       T I  +     +  N +    +         Q  E + +  I 
Sbjct: 60  GLDSKKQQQI-----LSTGIRKNKHYQLLHKNGQVVDIIASSF--PIFQNGEIISRYSIA 112

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
                 +  +  +         I E   D I I+N +G+I   + +V  + G  ++ ++ 
Sbjct: 113 RNITQQKKMEEALHQMQENFRLISENIMDLIFIVNVDGMITYASPSVQAVTGLTIDQVIN 172

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554
           + F++ +     +   +   ++L      TL+        + ++L   +       S+ +
Sbjct: 173 QHFSILIHPEQVTNAKNDFAQMLKQKA--TLDAEYHYPHPDGRMLLFDVKGTPDVCSNGH 230

Query: 555 SL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
            L       DI+E +Q +  L ++ K++        +  A ++HEIR PLTA+ GF +++
Sbjct: 231 ILSTVFVARDITERRQSEELLRYSDKLSV-----LGELAAGIAHEIRNPLTALKGFIQLM 285

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
           +   F         +Y   +    + +  I ++LL ++K +     L F P  L   +S 
Sbjct: 286 EGDEFAN------QQYLQIMRSEIDRITSITSELLIMAKPQ----TLRFAPNGLLPLLSS 335

Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
            I L++  A  K + I T F      IL +   +KQ+ +NI+ N +   P GG + I   
Sbjct: 336 VIKLLEPQALLKNVSILTDFPQVTSLILCEEYQIKQVFINIIKNGMEAMPLGGNLTIKVV 395

Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
              ++ VI+R+ D G G+    L +  + F     +      GTGLGL ++  ++  + G
Sbjct: 396 ERPSD-VIIRISDQGQGIPAELLPRLGELFYSTKET------GTGLGLMVSTKIIRDHGG 448

Query: 791 KFYIFSTPAKGTLIEIIFP 809
              I S   KGT + I  P
Sbjct: 449 TINIASDVGKGTTVSISIP 467



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/290 (8%), Positives = 78/290 (26%), Gaps = 26/290 (8%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD-ILHIDPNNHIGDLLKRQNTWY 144
            +  D  G    ++      +G  + +++ M++ ++      +D       +L       
Sbjct: 19  VFMFDMQGRFTGVNAAGEALVGFTSQELLRMQIWEILASTEGLDSKKQ-QQILSTGIRKN 77

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
               L    G    V I  ++ PI+ +N E      + I               ++ + F
Sbjct: 78  KHYQLLHKNG--QVVDIIASSFPIF-QNGEII--SRYSIARNITQQKKMEEALHQMQENF 132

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEKYPLL 262
             + E       +      I         +     ++V +         + +   K    
Sbjct: 133 RLISENIMDLIFIVNVDGMITYASPSVQAVTGLTIDQVINQHFSILIHPEQVTNAKNDFA 192

Query: 263 TS--EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
               ++++L  +  +   +               ++      +      +     +E   
Sbjct: 193 QMLKQKATLDAEYHYPHPDGRMLLFDVKGTPDVCSNGHILSTVFVARDITERRQSEELLR 252

Query: 321 LTPET--VDKCPIPF-------------FVYSHGNLFYANPSFLLLTKYK 355
            + +   + +                  F+       +AN  +L + + +
Sbjct: 253 YSDKLSVLGELAAGIAHEIRNPLTALKGFIQLMEGDEFANQQYLQIMRSE 302


>gi|297570096|ref|YP_003691440.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296926011|gb|ADH86821.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 909

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 88/442 (19%), Positives = 164/442 (37%), Gaps = 43/442 (9%)

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR-----KMEIEVMQL 454
           L+ I   +    A+  +  +   Q  E     G   + +   + +R     ++     + 
Sbjct: 357 LNEIDSRKNTETALRRLQEDLERQVAERTQALGDTNQALQREVAERQQTGEELRRAKEEW 416

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
                A +D + I++ E  I+  NRA  +L+G P E ++ +                 + 
Sbjct: 417 EETFNAMADTVTILDPELRIVRANRATGELWGQPAEQLVGRHCYELYRDAGEPCEGCPVA 476

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLS 572
           + L+   +   E      +   K   +                    DI+  K+ + KL 
Sbjct: 477 QTLADHRQHICEIE---HSPLGKTFLVSASPLIGNDGVCRGVVHVARDITVQKEFEAKLQ 533

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
             KK+            A ++H+    LT I+ +SE+I     G   +P   +  + I  
Sbjct: 534 QTKKM-----EAVGTLAAGIAHDFNNILTGILSYSELILR---GNTSDPALRDDISRILE 585

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
            G     +   LL  S+    +     +P+ L+E V   +  +      + I +  + + 
Sbjct: 586 LGRRGAGLTRQLLAFSR----EQEARMQPLKLNELVENLMKTL-GRLIGEDIEVTFNLSP 640

Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT--------------HTSNEEVI 738
           ++  +  D   ++Q+ LN++ NA    P+GG I+I+T                T    V+
Sbjct: 641 DLGNVNGDPGQLEQVILNLVVNARDAMPTGGTIVITTGNVELDAEQAARHPGMTPGPHVM 700

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           L V DTG GM     E   +PF          G GTGLGL     ++  + G  +++S  
Sbjct: 701 LTVSDTGSGMDPETQEHIFEPFFTTK----EVGAGTGLGLATVYGIIQQHQGSIWVYSEI 756

Query: 799 AKGTLIEIIFPLYDTSHPHDCI 820
             GT+ +I  P   T+ P   +
Sbjct: 757 GGGTVFKIFLP--QTTEPDHAL 776



 Score = 45.0 bits (105), Expect = 0.046,   Method: Composition-based stats.
 Identities = 27/273 (9%), Positives = 57/273 (20%), Gaps = 12/273 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN-HIGDLLKRQNTWYGKT 147
           +D    +   +    +  G  A +++G    ++            +   L        + 
Sbjct: 430 LDPELRIVRANRATGELWGQPAEQLVGRHCYELYRDAGEPCEGCPVAQTLADHRQHICEI 489

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
              P+  T       ++A P+   +    G     +     V  +  A  ++  K  +  
Sbjct: 490 EHSPLGKT-----FLVSASPLIGNDGVCRGV--VHVARDITVQKEFEAKLQQTKKMEAVG 542

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
                           I S           +           +           L +   
Sbjct: 543 TLAAGIAHDFNNILTGILSYSELILRGNTSDPALRDDISRILELGRRGAGLTRQLLAFSR 602

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF---EYLSHRNHPSLSAYFDEGENLTPE 324
               +     +N       +  G L     E            +           NL   
Sbjct: 603 EQEARMQPLKLNELVENLMKTLGRLIGEDIEVTFNLSPDLGNVNGDPGQLEQVILNLVVN 662

Query: 325 TVDKCPI-PFFVYSHGNLFYANPSFLLLTKYKS 356
             D  P     V + GN+               
Sbjct: 663 ARDAMPTGGTIVITTGNVELDAEQAARHPGMTP 695



 Score = 43.1 bits (100), Expect = 0.20,   Method: Composition-based stats.
 Identities = 20/283 (7%), Positives = 62/283 (21%), Gaps = 22/283 (7%)

Query: 251 DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310
              L  +K  LL   +S    +     +  +   +         ++ ++ +         
Sbjct: 346 QATLLKQKRSLLNEIDSRKNTETALRRLQEDLERQVAERTQALGDTNQALQR-EVAERQQ 404

Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
                   +    ET +       +      +  AN +   L    +   +        L
Sbjct: 405 TGEELRRAKEEWEETFNAMADTVTILDPELRIVRANRATGELWGQPAEQLVGR--HCYEL 462

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
                           L    +                  +  ++  P    +       
Sbjct: 463 YRDAGEPCEGCPVAQTLADHRQHICEIE------HSPLGKTFLVSASPLIGNDGVCR--G 514

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
              +  +    +  + K++    ++ ++    + GIA           N  ++ +  Y  
Sbjct: 515 VVHVARDITVQKEFEAKLQQTK-KMEAV-GTLAAGIA--------HDFNNILTGILSYSE 564

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
             +        L  +   ++                 +     
Sbjct: 565 LILRGNTSDPALRDDISRILELGRRGAGLTRQLLAFSREQEAR 607


>gi|37519602|ref|NP_922979.1| two-component hybrid sensor and regulator [Gloeobacter violaceus
           PCC 7421]
 gi|35210593|dbj|BAC87974.1| two-component hybrid sensor and regulator [Gloeobacter violaceus
           PCC 7421]
          Length = 692

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 90/464 (19%), Positives = 164/464 (35%), Gaps = 79/464 (17%)

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
           A Q        G+  E ++      ++    +     +E   D I +++ E   L+ N A
Sbjct: 82  AAQSALLEHAAGLVGERLEAEERLDEIHQRNLMYEKYIEMAPDQIGLLDSELRTLTVNAA 141

Query: 481 VSKLFGYPVEDILRKPFTVFLEQNT----PSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
           +S+  G P E IL K         +     +     +  +       T            
Sbjct: 142 LSRFSGMPKEWILGKSLWEMGIPESILAQMADWEQLIRRVFETGEPGTTSFAYSVGDASC 201

Query: 537 KLLSLRIIIKKLPFSSCYSLTM--------------------------HDISEWKQEKNK 570
           KL    + + +          +                           +++  +  + +
Sbjct: 202 KLYCYSLAVPQFNCRGEVVAVLNITYDRAALEMPFNPEDWAGMGEQLMREVAAHRVTQEE 261

Query: 571 LSHAKKIAEKESSH---------------------------------------KSDFLAR 591
           L+      E+                                           KSDFLA 
Sbjct: 262 LARLNAELEERVRERTVRYKLLNQKLRAEIGERQRIEVELQAAQARAEAAARAKSDFLAA 321

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
            SHE+RTP+  II  ++++     G        E A  I   G  +L ++N++LDISKIE
Sbjct: 322 ASHELRTPMHGIISMTDLLLESDLGA----EQRELAAIIGYCGETMLSLINNILDISKIE 377

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALN 710
           +G+M L   P  L   +   +++       K + ++      +P ++  D   + Q+  N
Sbjct: 378 AGRMELDVVPFELPRLIDSVVAMFAEQLRSKDLRLQVLIDPEVPAQLEGDPVRLAQVLTN 437

Query: 711 ILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
           ++ N++ FTP G QI I     +       +   V DTG+GM      +  + F Q   S
Sbjct: 438 LVGNSLKFTPRG-QIAIRVHPAAQGGDDLRLRFEVVDTGIGMAPETTGRLFQSFFQADTS 496

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
              +  GTGLGL +++ +V+   G+  + S   +G+    + PL
Sbjct: 497 TTRKYGGTGLGLAISRQLVELMGGQIGVESRLEQGSTFWFVLPL 540



 Score = 41.9 bits (97), Expect = 0.50,   Method: Composition-based stats.
 Identities = 31/308 (10%), Positives = 83/308 (26%), Gaps = 11/308 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT- 147
           +D+      ++  L +  G     ++G  L ++     I       + L R+    G+  
Sbjct: 129 LDSELRTLTVNAALSRFSGMPKEWILGKSLWEMGIPESILAQMADWEQLIRRVFETGEPG 188

Query: 148 ---TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
                + +   +  +     A+P ++   E         +  +R   +     +      
Sbjct: 189 TTSFAYSVGDASCKLYCYSLAVPQFNCRGEVV---AVLNITYDRAALEMPFNPEDWAGMG 245

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
             L      H   ++E   + ++       R         +  A   +  + E       
Sbjct: 246 EQLMREVAAHRVTQEELARLNAELEERVRERTVRYKLLNQKLRAEIGERQRIEVELQAAQ 305

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF----DEGEN 320
             +    +     +    +  +     + + +    E         L+A      +   +
Sbjct: 306 ARAEAAARAKSDFLAAASHELRTPMHGIISMTDLLLESDLGAEQRELAAIIGYCGETMLS 365

Query: 321 LTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
           L    +D   I         + +  P  +        + +        +L  P++     
Sbjct: 366 LINNILDISKIEAGRMELDVVPFELPRLIDSVVAMFAEQLRSKDLRLQVLIDPEVPAQLE 425

Query: 381 IKPVMLYR 388
             PV L +
Sbjct: 426 GDPVRLAQ 433


>gi|116199499|ref|XP_001225561.1| hypothetical protein CHGG_07905 [Chaetomium globosum CBS 148.51]
 gi|88179184|gb|EAQ86652.1| hypothetical protein CHGG_07905 [Chaetomium globosum CBS 148.51]
          Length = 1901

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 110/699 (15%), Positives = 203/699 (29%), Gaps = 100/699 (14%)

Query: 204  FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP--- 260
                  +         E      ++ P   ++++       +  A   +       P   
Sbjct: 787  DPATVSLAMTEPRRSSESLRPEPEELPSASIQLRRSAQGEKKEQAFPGETSSATGSPVDS 846

Query: 261  -----LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
                    S       Q   +  +     +     +            S       +   
Sbjct: 847  HHKMVATPSSTPHRHTQLHSYGADFASTFQSLPPSSSIGRGIPHPAAPSRSGSMMQTDMT 906

Query: 316  DEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
               + L    +D  P   FV     G + + N  FL      S D +      S      
Sbjct: 907  PPSDKLKGLILDSLPAHVFVALPQTGEIVWVNSRFLTYRGQTSGD-LAADPWAS----IH 961

Query: 374  KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
                   ++               A+   I+                 ++    M   G 
Sbjct: 962  PDEREEYLREWSHCVRTGEQF---AKTVQIRRFDGQYRWFYARAVASKDKRGVIMQFLGS 1018

Query: 434  EPEDVDTRINKRKMEIEVMQL------CSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
              +  D  I + K   +   L        +       I     +  I   N       G 
Sbjct: 1019 YMDIHDQHIAEVKAARQEEILASEAKHRLLANLIPQMIFTATEDEGITFANEQWLSYTGQ 1078

Query: 488  PVED-ILRKPFTVFLEQNTPSVMN-----------HYLTEILSLDLRQTLEKITLGS--- 532
               + +L   F  ++  +  +                   + +     + +         
Sbjct: 1079 APSEGVLGLGFMDYVHPDDLAKCRIPPGGQSVPQQDARAGLKNHGRSFSADYTATRQAGK 1138

Query: 533  ---TKEEKLLSLRIIIKKLPFSS-------------------------CYSLTMHDISEW 564
                 +  +      + +   SS                                D S  
Sbjct: 1139 HLSVPDGGIRGFDHPLLRNNSSSSSGSGSNDGSPYDLPTANLTELAKKGVIKVSTDSSGR 1198

Query: 565  KQEKNK-------------LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
                 +             L   +   ++    K  FL+ +SHEIRTPL  I G    ++
Sbjct: 1199 LSYTTEIRLRSKSATDINDLKLLETKLKEAMDSKGRFLSNMSHEIRTPLIGISGMVTFLQ 1258

Query: 612  NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
            +       N    +Y N I  S N +L I+ND+LD+SK+++G M L++E       + + 
Sbjct: 1259 DTTL----NEEQRDYTNTIQTSANSLLMIINDILDLSKVDAGMMKLNYEWFHTRSLIEDV 1314

Query: 672  ISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
              LV   A  KR+ +      ++P  +  D   ++Q+ LN++ NAI FT  G ++     
Sbjct: 1315 NELVSTMAIAKRLELNYVVEEDVPAWVKGDKVRIRQVLLNVIGNAIKFTSRG-EVFSKCR 1373

Query: 731  H---------TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
                      T    +   + DTG G +  E +   KPF QI  S   +  G+GLGL ++
Sbjct: 1374 VFNPEGAPPQTDEIMLEFSIIDTGRGFSQEEADLIFKPFSQIDGSSTRQHGGSGLGLVIS 1433

Query: 782  KAMVDANMGKFYIFSTPAKGTLIEII----FPLYDTSHP 816
            + +V+ + G+    + P KG+          P  +  HP
Sbjct: 1434 RQLVELHGGRMEGSAIPNKGSTFTFTARFGLP-TEDDHP 1471


>gi|9957556|gb|AAG09417.1|AF180147_9 bZIP histidine kinase TobS [Pseudomonas putida]
          Length = 978

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 90/374 (24%), Positives = 160/374 (42%), Gaps = 17/374 (4%)

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT---VFLEQNTPS 507
                 I +   + + +++  G +L  N+   +  G  +E+I  KPF     +       
Sbjct: 33  EEHARIIFDGLYEFVGLLDAHGNVLEVNQVALEGAGITLEEIRGKPFWKARWWQISKKTE 92

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM----HDISE 563
                L E  S       +   LG +   +++++   +  +       + +     +I+E
Sbjct: 93  ATQKRLVETASSGEFVRCDVEILGKSGGREVIAVDFSLLPICNEEGSIVYLLAEGRNITE 152

Query: 564 WKQEKNKLSHAKKIAEKE-------SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            K+ +  L+   +  E+         + KSDF A+VSHE+RTPL+ I+G  E +     G
Sbjct: 153 KKKAEAMLALKNQELEQSVECIRKLDNAKSDFFAKVSHELRTPLSLILGPLEAVMAAEAG 212

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
                 Y +    I R+   +L  VN LLD++K+++ +M L +   +L +      S  +
Sbjct: 213 RESP--YWKQFEVIQRNAMTLLKQVNTLLDLAKMDARQMGLSYRRANLSQLTRTISSNFE 270

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
             A +K I   T     +     D    ++I LN+LSNA  FTP GG I    + +    
Sbjct: 271 GIAQQKSITFDTKLPVQMVA-EVDCEKYERIILNLLSNAFKFTPDGGLIRCCLSLSRPNY 329

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
            ++ V D+G G+     ++  + F Q+    Q    GTGLGL + K  V+ + G   +  
Sbjct: 330 ALVTVSDSGPGIPPALRKEIFERFHQLSQEGQQATRGTGLGLSIVKEFVELHRGTISVSD 389

Query: 797 TPAKGTLIEIIFPL 810
            P  G L ++  PL
Sbjct: 390 APGGGALFQVKLPL 403



 Score =  258 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 74/438 (16%), Positives = 162/438 (36%), Gaps = 32/438 (7%)

Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR---KMEIEV 451
             SA     + +   S+ +      K      +                ++    +    
Sbjct: 553 PFSAHELRARVSNLVSMKVAGDALRKELSDQGDDIAILTHRLIKSRHRLQQSNIALSASE 612

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
            +  ++ E ++ GI + + E  IL+ N A  ++ GY  +D+           +    +  
Sbjct: 613 ARWKAVYENSAAGIVLTDPENRILNANPAFQRITGYGEKDLEGLSMEQLTPSDESPQIKQ 672

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLS----LRIIIKKLPFSSCYSLTMHDISEWKQE 567
            L  +L     +          K    +     + ++ +++  S      + DI+E KQ 
Sbjct: 673 RLANLLQGGGAE-YSVERSYLCKNGSTIWANASVSLMPQRVGESPIILQIIDDITEKKQA 731

Query: 568 KNKLSHAKKIAEKESSH--KSDFLARVSHEIRTPLTAIIGFSE----VIKNQRFGPLGNP 621
           +  L+  ++     S      +F A ++HEI  PL+AI+  +      + N+   P   P
Sbjct: 732 QENLNQLQQQLVYVSRSATMGEFAAYIAHEINQPLSAIMTNANAGTRWLGNE---PSNIP 788

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
              E    I R  +   +I+  +    K    +     +P+ L   V++   +++  +  
Sbjct: 789 EAKEALARIIRDSDRAAEIIRMVRSFLK----RQETVLKPIDLKALVTDTSLILKAPSQN 844

Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG----GQIIISTTHTSNEE- 736
             + +     + +P I  D   ++Q+ +N+  NAI           Q+ +S +     + 
Sbjct: 845 NSVNLDVVADDELPEIWGDGVQIQQLIINLAMNAIEAISQADCETRQLTLSFSGNDTGDA 904

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           +++ V+DTG G++  ++ +    F           EG G+GL +   + + + GK ++  
Sbjct: 905 LVISVKDTGPGISERQMAQLFNAFYTTKK------EGLGMGLAICLTITEVHNGKIWVEC 958

Query: 797 TPAKGTLIEIIFPLYDTS 814
            PA G    +  P    S
Sbjct: 959 PPAGGACFLVSIPARQGS 976



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/150 (8%), Positives = 44/150 (29%), Gaps = 9/150 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH-IDPNNHIGDLLKRQNT-WYGK 146
            D    +   +    +  G     + G+ +  ++           + +LL+     +  +
Sbjct: 629 TDPENRILNANPAFQRITGYGEKDLEGLSMEQLTPSDESPQIKQRLANLLQGGGAEYSVE 688

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
            +     G+ ++    ++ +P               I+ +     + +   + L++    
Sbjct: 689 RSYLCKNGSTIWANASVSLMPQRVGESPI-------ILQIIDDITEKKQAQENLNQLQQQ 741

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRM 236
           L  + +  +  E   Y       P   +  
Sbjct: 742 LVYVSRSATMGEFAAYIAHEINQPLSAIMT 771



 Score = 47.3 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 27/217 (12%), Positives = 61/217 (28%), Gaps = 11/217 (5%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMR-----LCDVSDILHIDPNNHIGDLLKR 139
           F   +DAHG + E+++   +  G    ++ G          +S          +      
Sbjct: 46  FVGLLDAHGNVLEVNQVALEGAGITLEEIRGKPFWKARWWQISKKTEATQKRLVETA-SS 104

Query: 140 QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199
                    +    G    + +D + LPI +           G            A+   
Sbjct: 105 GEFVRCDVEILGKSGGREVIAVDFSLLPICNEEGSIVYLLAEG--RNITEKKKAEAM--- 159

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
           L  K   L +  +    ++  K D F++ S      +   +  L    A +         
Sbjct: 160 LALKNQELEQSVECIRKLDNAKSDFFAKVSHELRTPLSLILGPLEAVMAAEAGRESPYWK 219

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS 296
                + +++   +  +T+        +  G     +
Sbjct: 220 QFEVIQRNAMTLLKQVNTLLDLAKMDARQMGLSYRRA 256


>gi|261822453|ref|YP_003260559.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Pectobacterium wasabiae WPP163]
 gi|261606466|gb|ACX88952.1| integral membrane sensor hybrid histidine kinase [Pectobacterium
           wasabiae WPP163]
          Length = 951

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 93/372 (25%), Positives = 155/372 (41%), Gaps = 29/372 (7%)

Query: 446 KMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           ++E        I+ +   GI I+   +G  + +N            +   +     +   
Sbjct: 350 QLEENEQFNRKIVASAPVGICILRISDGTNILSNELAHNYLNLLTHEDRLR--ITRIICE 407

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564
             S     +                   T     L +  +  +    +     + D+S  
Sbjct: 408 QQSKFVDVM-------------------TSRNHHLQISFVHSRYRNENVAICVLLDVSAR 448

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
            + +  L      AE+ S  KS FLA VSHE+RTPL  IIG  ++++ +      N    
Sbjct: 449 VKMEESLQEMANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKSLPQDAN---- 504

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
                ++ S +L+L I++D+LD SKIES ++ +     +  E +S   S       +KR+
Sbjct: 505 RLVLAMNNSSSLLLKIISDILDFSKIESEQLKIEPCEFAPHEVISHITSNYLPLVVKKRL 564

Query: 685 LIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
           ++      N+P  +  D   ++Q+  N+LSNAI FT +G  I+          +   VRD
Sbjct: 565 MLYCFIEPNVPVSLFGDPVRLQQVLSNLLSNAIKFTDTG-CIVFEVGCRD-GYLEFVVRD 622

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TGVG+   E  K   PF Q  +  Q   +GTGLGL + + +V+   G   I S P  G+L
Sbjct: 623 TGVGIQPREAVKLFDPFFQAGSGVQRHFQGTGLGLAICEKLVNLMDGDITIESEPGLGSL 682

Query: 804 IEIIFPLYDTSH 815
             +  PLY   +
Sbjct: 683 FGVRIPLYKAHY 694


>gi|187777063|ref|ZP_02993536.1| hypothetical protein CLOSPO_00608 [Clostridium sporogenes ATCC
           15579]
 gi|187773991|gb|EDU37793.1| hypothetical protein CLOSPO_00608 [Clostridium sporogenes ATCC
           15579]
          Length = 619

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 89/400 (22%), Positives = 177/400 (44%), Gaps = 13/400 (3%)

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
           +  +   N+  + +  +++  R  ++ +         +++ + D I +  R G I+  N 
Sbjct: 192 RRKEKEVNILASKLGQKEMQKRSMEQLLIKNENCYNLLIKNSKDAILVH-RYGKIIFANE 250

Query: 480 AVSKLFGYPVED-ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
            + ++ GY              + ++  + + + L ++          +  + + KE K+
Sbjct: 251 RLKQILGYEKSYNFEDIDIKSLVPKDEYNNIKNKLEDLYCGRKNLVKFQHNITNNKE-KI 309

Query: 539 LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK------SDFLARV 592
           +                  +HD++   Q +      KK  E  +  +      ++FL+ +
Sbjct: 310 IQNTSTYVIYNGMPTIFSILHDVTSKMQVEKLEQDVKKNIELLNESREYNKLITEFLSNI 369

Query: 593 SHEIRTPLTAIIGFSEVI---KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
           SHE++TPL  I    +++   +      +   +  +Y   I ++   ++ ++N+LLD +K
Sbjct: 370 SHELKTPLNVIFTAVQLLGFYEKDINKDINYEKQDKYLKLIKQNCYRLMKLINNLLDTTK 429

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709
           ++SG + L+    ++   + E    V  YA  K I I          I  D   +++I L
Sbjct: 430 LDSGYLKLNLVNYNIVSLIEEITLSVTSYAESKGINIIFDTNVEEKIIAVDPDKIERIIL 489

Query: 710 NILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
           N+LSN+I FT  GG I ++    S + V + V+DTGVG+ + +LE   + F Q+  + + 
Sbjct: 490 NLLSNSIKFTNLGGNIFVNI-IDSGDYVYIHVKDTGVGIPSDKLESIFQRFFQVDKTLKK 548

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             EGTG+GL L K+ V+ + G   I S   KGT   I  P
Sbjct: 549 NKEGTGIGLHLVKSFVEMHKGDVTIASELGKGTEFIIKLP 588


>gi|163740009|ref|ZP_02147414.1| multi-sensor hybrid histidine kinase [Phaeobacter gallaeciensis
           BS107]
 gi|161386754|gb|EDQ11118.1| multi-sensor hybrid histidine kinase [Phaeobacter gallaeciensis
           BS107]
          Length = 879

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 105/586 (17%), Positives = 211/586 (36%), Gaps = 29/586 (4%)

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
           V  +    A +   L  E    L    ++  +   +          K     L     + 
Sbjct: 9   VGLVLALLAVQSVRLGREVLVRLEVLSTAATDSLQWTLSQAEIEQLKLENAVLSARDAQD 68

Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDD 359
              +        S      E+ T ++V + P              N   L     +    
Sbjct: 69  LSQVRREFDILYSRVATIRESRTFKSVREAPE-------------NAQILQRVMARIDTL 115

Query: 360 IEIAGGLST--LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
           I    G     L   P++S         L       +A  AR+   +     ++      
Sbjct: 116 ITYIDGPDEALLFGLPQVSKILRKNRDDLRVLALAGLAEHARITEEKRLNLFAILSRLAW 175

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
              A      +    +       +    +    V ++ +++ ++ D I ++  +G I   
Sbjct: 176 VVLALCVALALTALMMGRLYQRGKRLAERTRFAVARMRAMITSSLDAILVVGDDGRIQEV 235

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNT-PSVMNHYLTEILSLDLRQTLEK---ITLGST 533
           N A   +FGY   +         +  +         +    +    + + +         
Sbjct: 236 NGAAETIFGYSRGEATGADMAQLIVPDHLRDAHEQGMQAYRAGGTAKVIGQGRVQLEAKR 295

Query: 534 KEEKLLSLRIIIKKLPFSSCYSLT--MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
           K  ++  + + I     +        + DIS+    + +L+  +  A      K+D L  
Sbjct: 296 KSGEIFPVELSITASQSAEETVFVSYLRDISDRIAAEEELTRTRDEALAGERAKADLLTV 355

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           +SHE+RTPLT ++G  E+++    G   +    +Y + I  SG+ ++  VND+L +S++E
Sbjct: 356 MSHEMRTPLTGVLGAVELLE----GTALSSDQHDYVSAIRTSGDRLMAHVNDVLQLSQLE 411

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANE--KRILIRTSFANNIPRILADLRSVKQIAL 709
           +     H    +L + V E I   Q  A      + +  S   +   +L    ++K++ +
Sbjct: 412 TSVDYEHQRIFNLSDLVQELIDAHQSTARRGRNDLSLHCSLGASGGDVLGRPVALKKVLV 471

Query: 710 NILSNAIHFTPSGGQIIIST-THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
           N++ NA+ FT  G  + +       ++ V + + DTG G+   +L++  + F ++  S  
Sbjct: 472 NLIENALQFTTDGA-VSVDVQRLGQSDTVEISIADTGAGIAERDLDRIFEDFIRLDASYA 530

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
              EGTGLGL + + +V A  G     S   +G+L  I  PL  + 
Sbjct: 531 RSSEGTGLGLAITRRIVVALGGDISCESELGEGSLFTISLPLPASH 576



 Score = 46.2 bits (108), Expect = 0.024,   Method: Composition-based stats.
 Identities = 26/236 (11%), Positives = 56/236 (23%), Gaps = 18/236 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI-DPNNHIGDLLKRQNTW---- 143
           +   G ++E++       G    +  G  +  +    H+ D +       +   T     
Sbjct: 226 VGDDGRIQEVNGAAETIFGYSRGEATGADMAQLIVPDHLRDAHEQGMQAYRAGGTAKVIG 285

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
            G+  L     +    P++L+     S             +              R   +
Sbjct: 286 QGRVQLEAKRKSGEIFPVELSITASQSAEETV----FVSYLRDISDRIAAEEELTRTRDE 341

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
                  K    +V   +          P   +   V  L       D           T
Sbjct: 342 ALAGERAKADLLTVMSHEMR-------TPLTGVLGAVELLEGTALSSDQHDYVSAIR--T 392

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
           S +  +    D   ++  + +       + N S    E +      +     D   
Sbjct: 393 SGDRLMAHVNDVLQLSQLETSVDYEHQRIFNLSDLVQELIDAHQSTARRGRNDLSL 448


>gi|126009878|gb|ABN64196.1| RcsC [Pectobacterium carotovorum subsp. carotovorum]
          Length = 951

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 93/372 (25%), Positives = 155/372 (41%), Gaps = 29/372 (7%)

Query: 446 KMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           ++E        I+ +   GI I+   +G  + +N            +   +     +   
Sbjct: 350 QLEENEQFNRKIVASAPVGICILRISDGTNILSNELAHNYLNLLTHEDRLR--ITRIICE 407

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564
             S     +                   T     L +  +  +    +     + D+S  
Sbjct: 408 QQSKFVDVM-------------------TSRNHHLQISFVHSRYRNENVAICVLLDVSAR 448

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
            + +  L      AE+ S  KS FLA VSHE+RTPL  IIG  ++++ +      N    
Sbjct: 449 VKMEESLQEMANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKSLPQDAN---- 504

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
                ++ S +L+L I++D+LD SKIES ++ +     +  E +S   S       +KR+
Sbjct: 505 RLVLAMNNSSSLLLKIISDILDFSKIESEQLKIEPCEFAPHEVISHITSNYLPLVVKKRL 564

Query: 685 LIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
           ++      N+P  +  D   ++Q+  N+LSNAI FT +G  I+          +   VRD
Sbjct: 565 MLYCFIEPNVPVSLFGDPVRLQQVLSNLLSNAIKFTDTG-CIVFEVGCRD-GYLEFVVRD 622

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TGVG+   E  K   PF Q  +  Q   +GTGLGL + + +V+   G   I S P  G+L
Sbjct: 623 TGVGIQPREAVKLFDPFFQAGSGVQRHFQGTGLGLAICEKLVNLMDGDITIESEPGLGSL 682

Query: 804 IEIIFPLYDTSH 815
             +  PLY   +
Sbjct: 683 FGVRIPLYKAHY 694


>gi|319650573|ref|ZP_08004713.1| sensor protein [Bacillus sp. 2_A_57_CT2]
 gi|317397754|gb|EFV78452.1| sensor protein [Bacillus sp. 2_A_57_CT2]
          Length = 481

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 105/496 (21%), Positives = 198/496 (39%), Gaps = 41/496 (8%)

Query: 317 EGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
           E  NL         +   V   G   Y +PS L +  Y   D    +         P   
Sbjct: 26  EARNLQLAIQHSSDVIARVTKEGIALYVSPSCLPMLGYSQQDFYRSSLYT---YCHPNDR 82

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           D        L       +         +    + L +        +          I  +
Sbjct: 83  DLLRDALAEL-----EQLPHKRETFRFRHKEGHYLWLEANFSVINDDKEMMC----IIRD 133

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV-EDILRK 495
                I + ++     +   ++E + D I ++ ++GI    N    KLFG+   ++++  
Sbjct: 134 MTQRIIMEEEILETQEKYRFLVEFSKDTIGMVTQKGIWTYINNEGKKLFGFTSIKEMIGT 193

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555
               ++  +  S ++ +L       L    E   + +  + +   +++I         Y 
Sbjct: 194 SLHDYIPPSEHSTLDDFLQ----TKLSVNFELNLIRTDGQTRKAEVQLIPTTFKNRKVYQ 249

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
           + + D++  K+ + KL +A+K++           A ++HEIR PLTAI GF++++  +  
Sbjct: 250 IIIKDVTGQKKTEEKLQNAEKLSVV-----GQLAAGIAHEIRNPLTAIKGFTQLLYEEHK 304

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
           G        ++A  I      +  IVNDLL ++K +  +M    E   L   V   I+L+
Sbjct: 305 G--------DFAEVILSELERIEGIVNDLLVLAKPQITEM----EETCLTNVVKSVITLL 352

Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
              A  + I+I  + +     +  +   +KQ+ +NI+ N+I   P+GG+I +      + 
Sbjct: 353 NSQAVMENIVIELTQSPGEFYVKCEKDKIKQVLINIIKNSIEAMPAGGKINVDIRQEDH- 411

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            VI+ V D G+G+    L K  +PF         + +GTGLG+ + K ++  + G  YI 
Sbjct: 412 SVIISVEDEGIGIPEERLAKLGEPFY------STKEKGTGLGIMICKKIIKNHGGNLYIH 465

Query: 796 STPAKGTLIEIIFPLY 811
           S   +GT + I  PL 
Sbjct: 466 SRENEGTTVRITLPLA 481


>gi|322417848|ref|YP_004197071.1| multi-sensor signal transduction histidine kinase [Geobacter sp. M18]
 gi|320124235|gb|ADW11795.1| multi-sensor signal transduction histidine kinase [Geobacter sp. M18]
          Length = 1156

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 113/811 (13%), Positives = 236/811 (29%), Gaps = 120/811 (14%)

Query: 90   DAHGYLKEISEELPKTIGNYAFKMIGMR--LCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
            +  G L+ IS       G    + +     L  +      +    + D   R+       
Sbjct: 379  NPDGSLRYISSNCQGLTGYTDQEFLESPGLLDSIIHPEDRE-LWRLRDAGAREGKPAAPV 437

Query: 148  TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
             L                  +   +    G RG         D     + +   +    L
Sbjct: 438  ELRLTTRQGETRWFKYTCRDVNGADGGSLGLRG--SFRDISQDRLLEGMLEEERRFAESL 495

Query: 208  HEIKKGHSSVEKEKYDIFSQQSP------PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
             E       V  + + I             P   M         +Y  K   L       
Sbjct: 496  LENTSMPLFVIDKNHRIIVWNRAIAEMTGMPASEMVGTDRQWQPFYPEKRPTLCDLVLSD 555

Query: 262  LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS-------------KESFEYLSHRNH 308
             + E  +L +      +       + ++  L                  E+   +     
Sbjct: 556  ASDEVGALYQSYSTDVVMEGIIRAEGWYRNLNGRDRYLFLDAAPVWRDGETVAVVETLYD 615

Query: 309  PSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
             +  A  DE   L  + V++      +    G + Y N  F  ++ +   + +     + 
Sbjct: 616  ITDRARADESLRLFSQAVEQSASTILITDASGVIQYVNRKFCEVSGFSKEEALGQKPSI- 674

Query: 368  TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
                        A + +    +              +    +    + +     +Q  + 
Sbjct: 675  ---LKSGRQPVEAYQQLWQTITAGKEWHGE---FNNKRKDGSLFWESALISPICDQQGKV 728

Query: 428  MPQNGIEPEDVDTRINKRKMEIEVMQL---------------------CSILEATSDGIA 466
                G++ E    +  +R++     +L                        ++   D +A
Sbjct: 729  THFLGVKEEITARKNAERQLLKNQAELVLKHEQLSELFRQVEKGKREWEQTMDCVDDLVA 788

Query: 467  IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
            +++ +G +   NRA   L G     ++   +   L      +        L     +   
Sbjct: 789  MVDDQGRVRRCNRAFKLLTGNSYSMLVSANWRDLLHGAGLDLEP------LETGHAEIFH 842

Query: 527  KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL---------SHAKKI 577
                    E     L +            + +HD++E KQ   +L         +H++ +
Sbjct: 843  --------EASRRWLTLRTYPYGDQGWQVIMLHDLTEIKQVSEELVAAYQELKATHSQLL 894

Query: 578  AEKESSHKSDFLARVSHEIRTPLTAII----------------------GFSEVIKNQRF 615
             +++ +      A V+HEI  P+  I                       G +E    +  
Sbjct: 895  QQEKMASIGQLAAGVAHEINNPMGFISSNLGTMGKYLERLEEFLEIQSTGLTETAPEEMK 954

Query: 616  GPLGNPR-----------YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
              +   R                         V  IV +L   S+++  +       V L
Sbjct: 955  LEIAQARKKYKVDYILGDARSLLAESQDGAERVRTIVQNLKSFSRVDDAQATY----VDL 1010

Query: 665  DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724
            ++ +   I++       K   +   +   +P +    + + Q+ LN+L NA H     G+
Sbjct: 1011 NDCLESTITIAWNELKYKT-TLVRDY-GELPPVRCLPQQLNQVFLNMLVNAAHAIEKQGE 1068

Query: 725  IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
            I IST   + +EV++ + DTG G+ +    +  +PF          G+GTGLGL ++  +
Sbjct: 1069 ITISTR-RAGDEVLIAIHDTGSGIPDEIKSRIFEPFFTTK----EVGKGTGLGLSISYDI 1123

Query: 785  VDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            +  + G   + S+   GT   I  P+   + 
Sbjct: 1124 IKKHNGSIEVESSAGAGTTFTIRLPVEGVAA 1154



 Score = 67.7 bits (164), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 42/423 (9%), Positives = 94/423 (22%), Gaps = 26/423 (6%)

Query: 174 EFSGFRGF--GIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231
           +F G R F  G +     +    A    +              +    + Y      +  
Sbjct: 88  QFQGARTFFNGGLEAIDAEGRSVAQSPPVQGGSIVKGNSYVAMALATGKPYLSPPYFAGT 147

Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTIN----LNQYTKKQ 287
              R     S     +      L    + L    ES                    T   
Sbjct: 148 APQRPTVSFSVPILRHDKSVAGLLAGHHDLTRHNESDRAMHTMGQRGRLIVMERNRTIIW 207

Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPS 347
           +    +  ++ +       +          GE               + +   +      
Sbjct: 208 HPDPSRVMARLAPGEDPGIDDALQRNRLASGETRDARGETWITTALPLSNADWIVA---- 263

Query: 348 FLLLTKYKSVDDIEIAGGLSTLL---DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
                ++   +                   L        +++    +   +    + T+ 
Sbjct: 264 ----LQFPESEAYLPLQRARLFFGGALGIILLLTQIALWLLIRHVTQPLASMVDHVRTLP 319

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
                   +T    +  ++            E++D R     +E        I E TS+ 
Sbjct: 320 ARSGADRRVTL---DTGDELEHLALAVNAMVEEMDQRRET--LEENQELYRIIAEFTSEL 374

Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKP--FTVFLEQNTPSVMNHYLTEILSLDLR 522
             + N +G +   +     L GY  ++ L  P      +      +              
Sbjct: 375 AILNNPDGSLRYISSNCQGLTGYTDQEFLESPGLLDSIIHPEDRELWRLRDAGAREGKPA 434

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEK 580
             +E        E +                     +  DIS+ +  +  L   ++ AE 
Sbjct: 435 APVELRLTTRQGETRWFKYTCRDVNGADGGSLGLRGSFRDISQDRLLEGMLEEERRFAES 494

Query: 581 ESS 583
              
Sbjct: 495 LLE 497



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 44/418 (10%), Positives = 107/418 (25%), Gaps = 60/418 (14%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIG--MRLCDVSDILHI--------DPNNHIGD 135
            + ID +  +   +  + +  G  A +M+G   +                  D ++ +G 
Sbjct: 503 LFVIDKNHRIIVWNRAIAEMTGMPASEMVGTDRQWQPFYPEKRPTLCDLVLSDASDEVGA 562

Query: 136 LLKR-------QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNR 188
           L +        +     +     + G + Y+ +D  A P++ R+ E         ++   
Sbjct: 563 LYQSYSTDVVMEGIIRAEGWYRNLNGRDRYLFLD--AAPVW-RDGETVAV--VETLYDIT 617

Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSSLTEY 246
                    +     FS   E       +      I              K +       
Sbjct: 618 DRARADESLR----LFSQAVEQSASTILITDASGVIQYVNRKFCEVSGFSKEEALGQKPS 673

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDF--HTINLNQYTKKQYFGTLQNNSKESFEYLS 304
                         L  +  +      +F     + + + +      + +   +   +L 
Sbjct: 674 ILKSGRQPVEAYQQLWQTITAGKEWHGEFNNKRKDGSLFWESALISPICDQQGKVTHFLG 733

Query: 305 HRNHPSLSAYFDEGE-------------------------NLTPETVDKCPIPF-FVYSH 338
            +   +     +                                +T+D        V   
Sbjct: 734 VKEEITARKNAERQLLKNQAELVLKHEQLSELFRQVEKGKREWEQTMDCVDDLVAMVDDQ 793

Query: 339 GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398
           G +   N +F LLT   S   +  A     L  A    +        ++           
Sbjct: 794 GRVRRCNRAFKLLTG-NSYSMLVSANWRDLLHGAGLDLEPLETGHAEIFHEASRRW---L 849

Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
            L T  +  +    +      +  Q  E +     E +   +++ +++    + QL +
Sbjct: 850 TLRTYPYGDQGWQVIMLHDLTEIKQVSEELVAAYQELKATHSQLLQQEKMASIGQLAA 907


>gi|220911752|ref|YP_002487061.1| histidine kinase [Arthrobacter chlorophenolicus A6]
 gi|219858630|gb|ACL38972.1| histidine kinase [Arthrobacter chlorophenolicus A6]
          Length = 551

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 80/417 (19%), Positives = 166/417 (39%), Gaps = 35/417 (8%)

Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM-----EIEVMQLCSILEA 460
           +   SL +  +                 +  +++ +  + +      + +   L ++L+ 
Sbjct: 158 DLTRSLLLPVMMLGIGISVSVLTLSMMRQQRELEDKDAQLQANLRTSQRQESLLNTVLDT 217

Query: 461 TSDGIAIINREGIILSTNR--AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
              G+  ++ +G  +  NR    + L   P ++       + +       +       + 
Sbjct: 218 VHLGVLAVDADGHDVLMNRKQRANHLLASPKDNPDPNESQLLVFGPDRKTLIPVEDRPVR 277

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-----CYSLTMHDISEWKQEKNKLSH 573
             +        L    + +     +   +    S        +   D+++          
Sbjct: 278 RAVLGETFTDYLVWLGDGRDQRAFVTTARAMKDSDGAFAGSVIAFSDVTDLVN------- 330

Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
                    + K DF++ VSHE RTPLT+I+G+ E++              E    I R+
Sbjct: 331 -------ALAAKDDFVSSVSHEFRTPLTSILGYVEILLADE----PEESQEEMLEIIRRN 379

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693
              +L +V+DLL  S+  +G++ +    V + E V  ++S     A    +++     + 
Sbjct: 380 SERLLTLVSDLLA-SR--NGQLIVSPHTVDVAELVRTSVSSALPKATASGVVLAAETPDQ 436

Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753
           +     D   + Q+  N++SNAI ++P GG +++S     +  +  RV DTG+GMT  + 
Sbjct: 437 L-EAHVDGARISQVLDNLVSNAIKYSPDGGNVLVSLA-RDDGHLECRVTDTGMGMTPEDA 494

Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            +    F +  N ++    G GLGLP++KA+V+A+ G   + ST  +GT      P+
Sbjct: 495 SEVFAKFFRTSNVRRTAIPGVGLGLPISKAIVEAHGGTISVDSTLGQGTTFTFRVPV 551


>gi|315127393|ref|YP_004069396.1| hybrid sensory histidine kinase BarA [Pseudoalteromonas sp. SM9913]
 gi|315015907|gb|ADT69245.1| hybrid sensory histidine kinase BarA [Pseudoalteromonas sp. SM9913]
          Length = 924

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 88/314 (28%), Positives = 150/314 (47%), Gaps = 16/314 (5%)

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQE 567
             +  +       L + +        +    +S  ++++K            D  E  ++
Sbjct: 209 ATDRLIEGKRQTGLTEPMNGEFELLREGLNTISHSMVMQKDEMQKNIDQATSDYRETLEQ 268

Query: 568 KN----KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
                 +L+ AKK A+  +  KSDFLA++SHE+RTPL  +IGF+  +         N   
Sbjct: 269 YETQNIQLTMAKKEAQDANRVKSDFLAKMSHELRTPLNGVIGFTRQLYKTPL----NKNQ 324

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            +Y + I+ S N ++ I++D+LD SK+E+G M L      L ++V+E ++L+   A++K+
Sbjct: 325 KDYLDTIELSANSLMTIISDILDFSKLEAGAMELESIQFQLRDSVNEVMTLLAPSAHDKQ 384

Query: 684 ILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTH--TSNEEVIL 739
           + +       +P  +  D    KQ+ +N+LSNAI FT  G  ++ IS          V++
Sbjct: 385 LELSIYINPQVPDHLTGDPTRFKQVLINLLSNAIKFTEKGAIKVDISHRLLDEERTSVLV 444

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V DTGVG+   + +     FGQ  +S   +  GTGLGL + K +V+A  G+  + S P 
Sbjct: 445 SVADTGVGIPADKQDALFTAFGQADSSITRKFGGTGLGLIITKHIVEAMSGRITLNSAPG 504

Query: 800 KGTLIE----IIFP 809
            GT          P
Sbjct: 505 SGTCFTFNGVFRLP 518


>gi|73666846|ref|YP_302862.1| sensor histidine kinase [Ehrlichia canis str. Jake]
 gi|72393987|gb|AAZ68264.1| ATP-binding region, ATPase-like:Histidine kinase A, N-terminal
           [Ehrlichia canis str. Jake]
          Length = 470

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 99/254 (38%), Positives = 155/254 (61%), Gaps = 1/254 (0%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           +S+      KL  AK++AE+E+  KS FLA VSHE+RTPL +IIGFSE++K++  G + N
Sbjct: 211 LSKQYDANLKLKEAKEVAEQENISKSQFLANVSHELRTPLNSIIGFSEMMKSESMGAIDN 270

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
             Y EY N I  SG  +L ++ND+LD SK+E+ K+ + F    L + +S   +++   A 
Sbjct: 271 VHYKEYINDIHNSGVHLLSLINDILDFSKVEANKLVVEFVKFDLSKIISSCFNMMVPRAE 330

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI-L 739
           + ++ +     +N   ++AD + +KQ+ +N+LSNAI FTP  G + +   +   E++I +
Sbjct: 331 QAKVKLEKVLPSNKVIMVADPKRMKQVIINLLSNAIKFTPENGVVKLVVEYNIEEKLIDI 390

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V D G+G+   +L K M  FGQ+ +    + EGTGLGLPL+K +V+   G F I S P 
Sbjct: 391 EVIDNGIGIAQQDLYKVMSIFGQVDSRHARKYEGTGLGLPLSKKLVELMDGVFKIKSEPN 450

Query: 800 KGTLIEIIFPLYDT 813
            GT++ + FP  DT
Sbjct: 451 LGTIVTLTFPYTDT 464


>gi|317048907|ref|YP_004116555.1| integral membrane sensor hybrid histidine kinase [Pantoea sp.
           At-9b]
 gi|316950524|gb|ADU69999.1| integral membrane sensor hybrid histidine kinase [Pantoea sp.
           At-9b]
          Length = 950

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 90/368 (24%), Positives = 161/368 (43%), Gaps = 29/368 (7%)

Query: 446 KMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           ++E        I+ +   GI I+   +G  + +N                  +   L Q 
Sbjct: 352 RLEEHEQFNRKIVASAPVGICILRTSDGTNILSNELA-------------HNYLTLLTQE 398

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564
               +N  +        +          T     L +  +  +    +     + D+S  
Sbjct: 399 DRQRLNEII-----GGQQVNF---VDVLTGSNTNLQISFVHSRYRNENVAICVLVDVSAR 450

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
            + +  L    + AE+ S+ KS FLA VSHE+RTPL  IIG  ++++ +      +    
Sbjct: 451 VRMEQSLQEMAQAAEQASASKSMFLATVSHELRTPLYGIIGNLDLLQTKALPKGVDS--- 507

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
                ++ S +L+L I++D+LD SKIES ++ +   P S  E ++  +         KR+
Sbjct: 508 -LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPRPFSPREVINHIVGNYLSLVVRKRL 566

Query: 685 LIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
            +     N++P  +  D   ++Q+  N+L+NAI FT +G   II   +     +  RVRD
Sbjct: 567 ALYVFIENDVPLALEGDPLRLQQVISNLLNNAIKFTHTGC--IILHAYEHEGYLAFRVRD 624

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TGVG+   E+ +   PF Q+ +  Q   +GTGLGL + + +++   G   + S P  G+ 
Sbjct: 625 TGVGIPAKEVTRLFDPFFQVGSGVQRNFQGTGLGLAICEKLINMMDGDIEVDSEPGMGSQ 684

Query: 804 IEIIFPLY 811
             +  P+Y
Sbjct: 685 FVVRIPIY 692


>gi|300864141|ref|ZP_07109036.1| Sensor protein [Oscillatoria sp. PCC 6506]
 gi|300337869|emb|CBN54182.1| Sensor protein [Oscillatoria sp. PCC 6506]
          Length = 409

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 84/272 (30%), Positives = 133/272 (48%), Gaps = 22/272 (8%)

Query: 559 HDISEWKQEKNKLSHAKK--------IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
             + + KQ   +    +          AE  +  KS FLA +SHE+RTPL AIIG+SE++
Sbjct: 132 RKLEQQKQLLEEKVKLRTVELLAAKEAAEAANIAKSQFLANMSHELRTPLNAIIGYSEML 191

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
           + +    L     I     I  +G  +L ++ND+LD+SKIESGK+ L+ E V++   + E
Sbjct: 192 QEEAED-LAQEDLIPDLKRIHGAGTHLLGLINDILDLSKIESGKVELYLETVNISLLIRE 250

Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG-QIIIST 729
            I +V+    +   ++    A+N+  +  DL  V+Q   N+LSNA  FT  G   I +  
Sbjct: 251 IIIMVRPLVEKNANVLVVDCADNLGYMKTDLTKVRQSLFNLLSNACKFTKKGKITIKVEK 310

Query: 730 THTSNE------------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
            +  +              ++ +V DTGVG++   +EK  +PF Q   S      GTGLG
Sbjct: 311 EYRKSGTLNGEEHKSAILYILFKVTDTGVGISPERMEKLFQPFTQADASTTREYGGTGLG 370

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           L + K +     G  ++ S   KG+   I+ P
Sbjct: 371 LAITKKLSRIMGGDIFVESEVGKGSTFTILLP 402


>gi|301163451|emb|CBW23002.1| putative two-component system sensor histidine kinase [Bacteroides
           fragilis 638R]
          Length = 812

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 95/517 (18%), Positives = 193/517 (37%), Gaps = 39/517 (7%)

Query: 313 AYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
                 E L  +     P+   +Y+  G L   N   L +        I        L +
Sbjct: 311 ERVMHSEKLFHDIFTNIPVGLELYNKEGVLLDCNNRNLEIFGVGDKSRIVGLN----LFE 366

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW----NRENSLAMTFIPFEKANQFPEN 427
           +P ++ +       L                 +      R   + +        +     
Sbjct: 367 SPNMTRDIHES---LRAGRPGTFHLKYDFDEERRLFQSERRGVMDLDIRSLMLYDAEDNL 423

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG---IAIINREGIILSTNRAVSKL 484
                +  ++ +      K+         I + +  G   I +++  G      R   + 
Sbjct: 424 SNYLLVNIDNTERNNALSKVHDFENFFSIISDYSKVGYAKINLLDHTG---FAVRQWYRN 480

Query: 485 FGYPVEDILRKPFTVF--LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE--KLLS 540
            G   +  L     +F  +  +    +  +  +  +    +  +        +   +   
Sbjct: 481 LGESHDTPLADIIGIFSHMHPDDRKSVLDFYEKAKA-GTERFFDGDLRIRPADGSDRWNW 539

Query: 541 LR----IIIKKLPFSS-CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
           +     +   + P          +DI+  K+ + +L  A+  AE+ +  KS FLA +SHE
Sbjct: 540 IHKSSMVTAYQSPNPRLELVEVNYDITVQKETEAELRAARDKAEESNRLKSAFLANISHE 599

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           IRTPL AI+GFS+++              E+   I ++  L+L + +D++D+SKI++G  
Sbjct: 600 IRTPLNAIVGFSDLLM----TVDDPAEQEEFRRTIQKNNTLLLQLFSDIIDLSKIDAGSF 655

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSN 714
               +PV L +  +  +  ++    E  + ++    + +     AD   + Q+  N +SN
Sbjct: 656 EYMPKPVCLYQFCAMMVQKMRNKVPE-GVELQIDEDSPLDAWFSADSGYLNQVVTNFMSN 714

Query: 715 AIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           AI FT  G  I +     + +++ + V DTG+G++    E     F ++ +      +GT
Sbjct: 715 AIKFTHRG-TITVGYRIDTRQQLEMFVEDTGIGISIENQEAVFDRFMKVDSF----VQGT 769

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
           GLGLPL K++++   G   + S   KG+      P +
Sbjct: 770 GLGLPLCKSIIEKMGGHIGVISELGKGSRFWFTLPAF 806



 Score = 47.3 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 43/301 (14%), Positives = 86/301 (28%), Gaps = 46/301 (15%)

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
           +L++P      A++   +   + T     A L  ++           I         E+ 
Sbjct: 233 ILNSPDELPPLAVRDREVLAENGTNSMMLAPL--MREEGVWGYMGIDIVDGYRKWNSEDY 290

Query: 429 PQNGIEPED----VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
                        ++ RI K ++         I      G+ + N+EG++L  N    ++
Sbjct: 291 QWFSSLANIISICMELRIIKERVMHSEKLFHDIFTNIPVGLELYNKEGVLLDCNNRNLEI 350

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL------EKITLGSTKEEKL 538
           FG   +              +P++       + +             E+  L  ++   +
Sbjct: 351 FGVGDKS----RIVGLNLFESPNMTRDIHESLRAGRPGTFHLKYDFDEERRLFQSERRGV 406

Query: 539 LSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESS------HKSDF 588
           + L I    L  +      Y L   D +E     +K+   +      S        K + 
Sbjct: 407 MDLDIRSLMLYDAEDNLSNYLLVNIDNTERNNALSKVHDFENFFSIISDYSKVGYAKINL 466

Query: 589 LARV-------------SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
           L                SH+  TPL  IIG    +      P      +++         
Sbjct: 467 LDHTGFAVRQWYRNLGESHD--TPLADIIGIFSHM-----HPDDRKSVLDFYEKAKAGTE 519

Query: 636 L 636
            
Sbjct: 520 R 520


>gi|283851237|ref|ZP_06368520.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           sp. FW1012B]
 gi|283573406|gb|EFC21383.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           sp. FW1012B]
          Length = 736

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 110/629 (17%), Positives = 214/629 (34%), Gaps = 28/629 (4%)

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
           + E             D+   +     L    +              L        T   
Sbjct: 109 VREYAASGPGYTDRGLDLSRDRIVAEALAAPGRTVWGLRNSPRDGTPLLAMAQARRTPFG 168

Query: 267 SSLPEQEDF---HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
             +           I     T     G +   +  +   L   +   L     +G +L  
Sbjct: 169 QDMGILLAALPLRAIAPGLLTLHLEEGGIAVLADAAGTLLFAESLRGLPDRAGQGTSLAR 228

Query: 324 ETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
              D+          G       + +      ++  +     +   +   +         
Sbjct: 229 ALADQKETVLLEPFAGEASLLAVAPVGQYGLSTLVALPRRLAVDAEIGRLRQLVAAIAAA 288

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM----PQNGIEPEDVD 439
                +             +    + + A++        +                    
Sbjct: 289 AAFLSTLAALWWTGGIARPLARLADAARAVSGGDLGVRARAAGPAEARDLALAFNAMTEG 348

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
              ++ ++      L +IL   ++ I  ++R+G +   NRA   + GY   +   +P   
Sbjct: 349 LAASRDELTQAKRSLENILATMNEAILAVDRQGRVTMLNRAGCAMLGYAPGEAAGRPAAS 408

Query: 500 FLEQNTPSVMN---HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---- 552
           F     P         + ++L+      LEK  LG  KE + + + + +  L        
Sbjct: 409 FFPPGDPLCAFLDSAPVQDLLASGGMTGLEKTLLG--KEGRTVPVLVSVALLRGPGARVE 466

Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
                  DI+E K+  + L+ A+K AE  S  K++FLA +SHE+RTPL  I+G  + ++ 
Sbjct: 467 GVVCLAMDITEHKRA-DDLARARKAAEAASRAKTEFLAVLSHEMRTPLNIILGILDHLEG 525

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
               P      ++       +G  + D++  +LD + +E+G++ L  E  S  +   +  
Sbjct: 526 MALPPDTRAGLVQALA----AGTALHDVIVAMLDYASLEAGRVILRRESFSPRQLAMDLA 581

Query: 673 SLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII----I 727
                 A  K + +    A ++P R+  D   + Q   N+L+NA+ FT  G   +    +
Sbjct: 582 GRFAAQAKAKGVGLAAHVAPDMPTRLAGDPARLAQALGNLLANAVRFTEQGQAALFLSLV 641

Query: 728 STTHTSNE--EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
                      ++  V DTG G+T+ +LE   +PF Q       R  G GLGL +A+ +V
Sbjct: 642 PAARVPGGPRRLLAVVTDTGPGVTDAKLEYVFEPFTQEDARSTRRFGGLGLGLAIARRLV 701

Query: 786 DANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
               G   + S P +GT + +  P+ + +
Sbjct: 702 GLMGGTICMDSRPGQGTDVYVSLPVDEDA 730



 Score = 54.3 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 23/249 (9%), Positives = 52/249 (20%), Gaps = 12/249 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH----IDPNNHIGDLLKRQNTWY 144
           +D  G +  ++      +G    +  G                  +  + DLL       
Sbjct: 377 VDRQGRVTMLNRAGCAMLGYAPGEAAGRPAASFFPPGDPLCAFLDSAPVQDLLASGGMTG 436

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            + TL   EG    VP+ ++   +        G     +            L +      
Sbjct: 437 LEKTLLGKEGRT--VPVLVSVALLRGPGARVEGV--VCLAMDITEHKRADDLARARKAAE 492

Query: 205 SHLHEIKKGHSSVEKEKYD----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
           +      +  + +  E       I         + +     +           L      
Sbjct: 493 AASRAKTEFLAVLSHEMRTPLNIILGILDHLEGMALPPDTRAGLVQALAAGTALHDVIVA 552

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
           +L                   +       G     +K     L+    P +         
Sbjct: 553 MLDYASLEAGRVILRRESFSPRQLAMDLAGRFAAQAKAKGVGLAAHVAPDMPTRLAGDPA 612

Query: 321 LTPETVDKC 329
              + +   
Sbjct: 613 RLAQALGNL 621


>gi|218248058|ref|YP_002373429.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 8801]
 gi|218168536|gb|ACK67273.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 8801]
          Length = 763

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 74/253 (29%), Positives = 130/253 (51%), Gaps = 7/253 (2%)

Query: 563 EWKQEK--NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK--NQRFGPL 618
           E +  +   +L      A+  +  KS+FL+ +SHE+RTPLT IIG S  +   + +   L
Sbjct: 362 EQRVIERTQELRDTLIAAQSANHSKSEFLSNMSHELRTPLTCIIGLSGTLLHWSAQSKSL 421

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
              +  +Y   I  SG  +L+++N++L+ SK+E+GK  L  +  SL +A       ++  
Sbjct: 422 PLQKQQQYLQTIQDSGKHLLEMINEILEYSKLEAGKYVLSIQQFSLQKAAQNIHKKLRQE 481

Query: 679 ANEKRI--LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
           A +++I   +            AD   ++QI  ++L+NA+ FTP GG +I+        E
Sbjct: 482 AVKRKINLQLELQIEPQENFFFADPERLQQILYHLLNNALKFTPEGGTVILRI-WREGNE 540

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
            I +V DTG+G+   ++    + F Q+  S++    GTGLGL L K +V+ + G   + S
Sbjct: 541 AIFQVEDTGIGIAQEQIPLLFESFQQLETSRRRTYGGTGLGLALTKQLVELHGGTIEVES 600

Query: 797 TPAKGTLIEIIFP 809
              +G++  +  P
Sbjct: 601 ILQEGSIFTVRLP 613


>gi|163742422|ref|ZP_02149809.1| Hybrid sensory histidine kinase [Phaeobacter gallaeciensis 2.10]
 gi|161384372|gb|EDQ08754.1| Hybrid sensory histidine kinase [Phaeobacter gallaeciensis 2.10]
          Length = 759

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 82/260 (31%), Positives = 136/260 (52%), Gaps = 8/260 (3%)

Query: 555 SLTMHD-ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
              + D  SE  + +  L  A+K A+  +  KS+FLA +SHEIRTP+  +IG +E+I   
Sbjct: 209 VGVLEDTFSERDEREYALEEARKAADIANRAKSEFLANMSHEIRTPMNGVIGMAELILET 268

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
                 +     YA  I +SG+ +L I+ND+L+ SKIE+GKM L   P +L  A+ + ++
Sbjct: 269 DL----DEDQTMYAETISKSGSALLTIINDILNFSKIEAGKMELERAPFNLQTAIEDVVT 324

Query: 674 LVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTH 731
           L+   A EK + +   +  ++P     D+  ++QI  N+  NA+ FT  G   I +S   
Sbjct: 325 LLSPKAAEKNVEVTLRYDPSLPECYEGDVGRIRQILTNVAGNAVKFTGKGYVYIEVSGET 384

Query: 732 TSNEE-VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
             +   + + V DTG G+ +  L++    F Q   +     EGTGLGL ++  +++   G
Sbjct: 385 DDDRTALRISVTDTGAGIPDDRLDRIFNAFEQADGAATRNYEGTGLGLAISTRLLELMGG 444

Query: 791 KFYIFSTPAKGTLIEIIFPL 810
           +  + S   KG++  I  PL
Sbjct: 445 RISVQSELGKGSVFTIDLPL 464


>gi|114562225|ref|YP_749738.1| hybrid sensory histidine kinase BarA [Shewanella frigidimarina
           NCIMB 400]
 gi|114333518|gb|ABI70900.1| multi-sensor hybrid histidine kinase [Shewanella frigidimarina
           NCIMB 400]
          Length = 952

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 88/245 (35%), Positives = 131/245 (53%), Gaps = 8/245 (3%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  AKK A + S  KS+FLA +SHE+RTPL  +IGF+  +             ++Y   
Sbjct: 306 ELDIAKKRALEASRIKSEFLANMSHELRTPLNGVIGFARQLLKTPLHT----SQLDYIKT 361

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I+RS + +L I+ND+LD SK+E+GKM L   P +L E ++E ++++   A EK + +   
Sbjct: 362 IERSASNLLGIINDILDFSKLEAGKMILEKMPFALRETLTETLTIIAGSAQEKGLELVID 421

Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI-IISTTHTSNEEVILR--VRDTG 745
              N+P  +  D   V QI  N++ NAI FT  G  I  I       + + LR  V DTG
Sbjct: 422 IDANVPESVSGDAMRVSQIITNLVGNAIKFTDKGSVILKIHLVGQDEDNITLRCEVIDTG 481

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+   + E   + FGQ  +S   R  GTGLGL + K +++   G+    S P KG+   
Sbjct: 482 IGIDESQQEYLFQAFGQADSSISRRFGGTGLGLVITKRLINQMGGQIGFTSAPNKGSNFW 541

Query: 806 IIFPL 810
            I PL
Sbjct: 542 FILPL 546


>gi|461403|gb|AAA98756.1| sensor kinase [Pseudomonas fluorescens]
          Length = 575

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 81/415 (19%), Positives = 173/415 (41%), Gaps = 12/415 (2%)

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD-GIAIIN 469
                      +             +    R+ + ++ +   ++  + E+T D  I I++
Sbjct: 25  RWYIARLLPYRSSEDHIDGTVLTFIDITKRRLAEEELRLGEERMRLVAESTHDFAIIILD 84

Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
            +G+I   N     +FGY  +++L   + +       +      +E+L+       +   
Sbjct: 85  NQGLITDWNTGAQLIFGYTKDEVLGAYYDLIFAPEDRAGGVPE-SELLTAREHGRSDDER 143

Query: 530 LGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
               K+ +       + +L       Y     D++  K+ +++ +      +  S  K +
Sbjct: 144 WHIRKDGERFFCSGEVTRLKGDSLQGYVKIARDLTGHKRMQDEQNQKLMETQTHSHLKDE 203

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           F A +SHE++ PL  I   +E +  +          ++  N I  + +    I++DLLD+
Sbjct: 204 FFAVMSHELKHPLNLIQLNAE-LLRRLPTTKAAAPALKAVNTICEAVSSQARIIDDLLDV 262

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL-IRTSFANNIPRILADLRSVKQ 706
            ++ +GK+ L  +PV L   + +  ++V    +  ++             I AD   ++Q
Sbjct: 263 RRLRTGKLKLKKQPVDLGRILQDIHTVVLSEGHRCQVTLQVPLPPQPPLMIDADATRLEQ 322

Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ-IPN 765
           +  N+++NA+ FTP+ G + +       ++  + V D+GVG+   +  K    FGQ    
Sbjct: 323 VIWNLVNNALKFTPANGLVQL-IAQRVEDKAHVDVIDSGVGLAEEDQNKVFDLFGQAANQ 381

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFPLYDTSHPHDC 819
               + +G G+GL L + +V+A+ G   + S    +G    ++ PL   SHP+D 
Sbjct: 382 HGTHQRDGLGIGLSLVRQLVEAHGGSVSVQSKGLGQGCTFTVLLPL---SHPNDS 433


>gi|254417391|ref|ZP_05031133.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196175826|gb|EDX70848.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 684

 Score =  294 bits (752), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 91/356 (25%), Positives = 166/356 (46%), Gaps = 31/356 (8%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYL-TEILSLDLRQTLEKITLGSTKEEKLLSLR 542
           L    + ++        L+ +  +     +    L     +       G     K   L 
Sbjct: 59  LLDIKMPEMDGYEVCQRLKADEKTAEIPVIFLSALDEVWDKVKAFEVGGVDYITKPFQLE 118

Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEK-NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
            +I ++       LT+  I +  Q +   L+ AK+ AE  +  KS+FLA +SHEIRTPL 
Sbjct: 119 EVIARVKTQ----LTLRHIQQQLQAQNATLAEAKEAAEAANRAKSEFLATMSHEIRTPLN 174

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           A+IG + +++N +     +    +    I +SG  +L  +ND+LD +KIESGK+ L F+P
Sbjct: 175 AVIGLTGILENTKL----DAHQQDLVETIRQSGETLLITINDVLDFAKIESGKLELEFKP 230

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTP 720
            +L + +  A+ L    A +K + +       +P  ++ D+  ++QI +N+LSNAI FT 
Sbjct: 231 FNLRDCLETAVDLFAPKAVQKGLELTYFIDPEVPSTLVGDVTRLRQILINLLSNAIKFTD 290

Query: 721 SGGQIIISTTHT----------------SNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764
            G ++ +S                        ++  V+DTG+G+      +  + F Q+ 
Sbjct: 291 VG-EVSVSVKVEHCYVTNSTQNQDSHTSPTVCILFSVKDTGIGIPKDRFNRLFQRFSQLD 349

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE--IIFPL-YDTSHPH 817
           +S   +  GTGLGL ++K + +   G+ ++ ST  +G+     ++  +  D S P+
Sbjct: 350 SSTTRQYGGTGLGLIISKQLSEMMGGEIWVDSTLGEGSTFSFCVVLSVDQDASEPN 405


>gi|255009439|ref|ZP_05281565.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
 gi|313147205|ref|ZP_07809398.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
 gi|313135972|gb|EFR53332.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
          Length = 633

 Score =  294 bits (752), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 96/513 (18%), Positives = 200/513 (38%), Gaps = 35/513 (6%)

Query: 315 FDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
               + L  +  +  P+   +Y+  G L   N   L +      + I       +L ++P
Sbjct: 134 SQRSDKLFHDIFNNIPVGLELYNKEGVLLDCNNRNLEIFGVTDKNRIIGL----SLFESP 189

Query: 374 KLSDNNAIKPVMLYRSDRT---CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
            ++ +  +   +      +              +  R+  + +        +        
Sbjct: 190 NVTQD--MLESLQAGCPGSFHLHYNFDEERRLFRSERKGMVDLDVRSLMLYDAEGNLSNY 247

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG---IAIINREGI-ILSTNRAVSKLFG 486
             +  ++ +      K+         I + +  G   I ++N  G  I    R + +   
Sbjct: 248 LLMNIDNTERNNALSKVHDFENFFSIISDYSKVGYAKINLLNHTGYAIRQWYRNLGESHD 307

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK----LLSLR 542
            P+ DI+      ++  +   ++  +  +  +    +  +        E       +   
Sbjct: 308 TPLTDIIG--VFSYMHPDDRKLVLDFYEKAKA-GTERFFDGDLRIRRAEGSDEWNWIHKS 364

Query: 543 IIIKKLPFSSCYSLTMH---DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
            ++            +    DI+  K+ + +L  A+  AE+ +  KS FLA +SHEIRTP
Sbjct: 365 SMVTSYQSPDPRLELVEVNYDITVQKETEAELRAARDKAEESNRLKSAFLANISHEIRTP 424

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L AI+GFS+++              E+   I ++  L+L + +D++D+SKI++G      
Sbjct: 425 LNAIVGFSDLLM----TVDDPAEQEEFRQTIQKNNVLLLQLFSDIIDLSKIDAGSFEYMP 480

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHF 718
           +PV L +  +  +  ++    E  + +R    + +     AD   + Q+  N +SNAI F
Sbjct: 481 KPVYLYQFCAMMLQKMKDRVPE-GVELRIDEDSPLDAWFNADSGYLNQVITNFVSNAIKF 539

Query: 719 TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
           T  G  I I     +  ++ + V DTG+G++          F ++ +      +GTGLGL
Sbjct: 540 THRG-TITIGYQIDAARQLEMFVEDTGIGISAENQTAVFDRFMKVDSF----VQGTGLGL 594

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
           PL K++++   G+  + S   KG+      P+ 
Sbjct: 595 PLCKSIIEKMGGRIGVTSEFGKGSRFWFTLPVS 627


>gi|225387740|ref|ZP_03757504.1| hypothetical protein CLOSTASPAR_01510 [Clostridium asparagiforme
           DSM 15981]
 gi|225046158|gb|EEG56404.1| hypothetical protein CLOSTASPAR_01510 [Clostridium asparagiforme
           DSM 15981]
          Length = 418

 Score =  294 bits (752), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 64/403 (15%), Positives = 165/403 (40%), Gaps = 29/403 (7%)

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG 472
           + F  +    +      +  I   +   R  +   +       ++  A  DGI +   +G
Sbjct: 33  LYFKNYISELEKRNQKLETEIAAREKRLRDMRASDDDRFNYFNAVFAAMKDGIVVFKDDG 92

Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
            ++  NRA              K      ++++       ++++         E+     
Sbjct: 93  ELVLVNRAARAFLHID------KHIFFKSDKSSYGAFYGLVSDVCRQAFESATERRVEFQ 146

Query: 533 TKEEKLLSLRIIIKKLPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
             + ++  +  ++    +           + D++E ++ + +              + +F
Sbjct: 147 EGD-RIFEVSALLIPDRYQKGICLGVMAVVIDVTEARRLEAR--------------RKEF 191

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
           ++ VSHE RTP+T I G++E++  + +  +      +  + I++    +  +V++LL +S
Sbjct: 192 VSNVSHEFRTPMTLISGYAEML--RMWDEVTKEERTKALDVIEQETKRLKKLVSELLTLS 249

Query: 649 KIESGKMNLHFEPV-SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707
           +++  +      P   ++  + + +  ++  AN++R+ + +    + P + A+ +   Q+
Sbjct: 250 RLDRQEGEERNLPFVDVEAVIEQILWSLEDMANKRRVELVSDVEVDYPVLRANEQFFYQM 309

Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
            LN++ N I +    G++ +         + + V D+G G+     E+    F +I   +
Sbjct: 310 LLNLIENGIKYNREQGRVKV-WARNDGNVLRITVSDSGRGIEEKHQERIFDRFYRIDEDR 368

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             R  G G+GL +  ++V+   G+  + S P +G+  +I  PL
Sbjct: 369 NSRHGGNGIGLSIVSSVVEQMRGRIRVESRPGEGSEFKIELPL 411


>gi|237809486|ref|YP_002893926.1| hybrid sensory histidine kinase BarA [Tolumonas auensis DSM 9187]
 gi|237501747|gb|ACQ94340.1| Hpt sensor hybrid histidine kinase [Tolumonas auensis DSM 9187]
          Length = 908

 Score =  294 bits (752), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 91/344 (26%), Positives = 164/344 (47%), Gaps = 16/344 (4%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNH---YLTEILSLDLRQTLEKITLGSTKEEKLLS 540
           L G  +           + +    ++          L   +R  ++            ++
Sbjct: 183 LLGLIMSLFFGLNLVHVVIEPINRMVRAVYHIREGRLDTRVRGKMDGELDMLKNGINAMA 242

Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEI 596
             I                D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+
Sbjct: 243 KAISEYHNEMQQSIDQATSDLRETLEQIEIQNVELDMAKKRAQEAARIKSEFLANMSHEL 302

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTPL  +IGF+  +   +          +Y + I+ S   +L I+ND+LD SK+E+GK+ 
Sbjct: 303 RTPLNGVIGFTRQLFKTQLSL----HQRDYLSTIEHSAKNLLSIINDILDFSKLEAGKLT 358

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNA 715
           L   P ++ E +++ ++L+   A++K++ +    +  IP  +  D   ++QI  NI+ NA
Sbjct: 359 LENIPFNIREMINDTVTLLAPSAHDKKLELSLLVSQPIPDLVAGDPLRLQQIITNIVGNA 418

Query: 716 IHFTPSGGQ-IIISTTHTSNEE---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           I FT  G   I +STT + +++   +  R+RDTG+GM + +L +  +PF Q  +S   R 
Sbjct: 419 IKFTEQGMVNIHVSTTPSIDQQKVLLRFRIRDTGIGMDDEQLMRLFQPFIQGDSSISRRY 478

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            GTGLGL +++ +++   G   + S P +G+   I  PL   S 
Sbjct: 479 GGTGLGLVISQKLIEQMDGSMQVHSEPNQGSEFTITMPLELVSE 522


>gi|227328226|ref|ZP_03832250.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Pectobacterium carotovorum subsp. carotovorum
           WPP14]
          Length = 935

 Score =  294 bits (752), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 94/370 (25%), Positives = 153/370 (41%), Gaps = 29/370 (7%)

Query: 446 KMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           ++E        I+ +   GI I+   +G  + +N            +   +     +   
Sbjct: 334 QLEENEQFNRKIVASAPVGICILRINDGTNILSNELAHNYLNLLTHEDRLR--ITRIICE 391

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564
             S     +                   T     L +  +  +    +     + D+S  
Sbjct: 392 QQSKFVDVM-------------------TSRNHHLQISFVHSRYRNENVAICVLLDVSAR 432

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
            + +  L      AE+ S  KS FLA VSHE+RTPL  IIG  ++++ +      N    
Sbjct: 433 VKMEESLQEMANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKSLPQDAN---- 488

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
                ++ S +L+L I++D+LD SKIES ++ +     +  E +S   S       +KR+
Sbjct: 489 RLVAAMNNSSSLLLKIISDILDFSKIESEQLKIEACEFAPHEVISHITSNYLPLVVKKRL 548

Query: 685 LIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
            +      N+P  +  D   ++Q+  N+LSNAI FT +G  II          +   VRD
Sbjct: 549 TLYCFIDPNVPVSLFGDPVRLQQVLSNLLSNAIKFTDTG-CIIFEVGCRD-GYLEFVVRD 606

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TGVG+   E  K   PF Q  +  Q   +GTGLGL + + +V+   G   I S P  G+L
Sbjct: 607 TGVGIQPREAVKLFDPFFQAGSGVQRHFQGTGLGLAICEKLVNLMDGDITIESEPGLGSL 666

Query: 804 IEIIFPLYDT 813
             +  PLY  
Sbjct: 667 FGVRIPLYKA 676


>gi|218437440|ref|YP_002375769.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
 gi|218170168|gb|ACK68901.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
          Length = 703

 Score =  294 bits (752), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 90/552 (16%), Positives = 192/552 (34%), Gaps = 49/552 (8%)

Query: 288 YFGTLQNNSKESFEYLSHRNHP--SLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYA 344
                    + + E L  +N          +E      +  +  P  + V    G +  A
Sbjct: 41  ELSIALEELRVATEELHEQNEQLDIAREEAEEVRQHYQDLFEFAPDGYIVTDEKGVIQEA 100

Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIA------ASA 398
           N     L   +          +        + +N+  K      +               
Sbjct: 101 NEVASQLLNVQKKYLFNKPIDIFVARIDQDIFNNHWSKIQKTLNNLGNYQPQKFIKSWEM 160

Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458
            L     +      +        N   E +    +  +    +  + ++  +     ++L
Sbjct: 161 ILQPRHQD---PFPVAVSVSVSVNIKGEIIKLRWLLRDLTQQKKTQEQLSEQ----AALL 213

Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
              SD I + N    I+  NR+   L+G+  ++I  K  ++ L  ++   +      +  
Sbjct: 214 NVVSDAIIVYNLHDQIVFWNRSAQDLYGWTAQEIEGKNISLILSADSQQKLAQIYQSLFK 273

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKK 576
                  E   +  T +  ++  R  + +    +     +   DI+  KQ + +   +++
Sbjct: 274 QG-EWKGELNQIKRTGKSIIVDSRWTVVRDEKKNLKSILVVNTDITLAKQLETERLQSQR 332

Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
           +    S       + +SH++   LT I+G ++++  +   P  + +  +    I+ +   
Sbjct: 333 LEIIGS-----LASGISHDLNNILTPILGMAQLLPRKL--PHADEQIQQMFKIIEINAQR 385

Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696
              ++  +L  S+  + K +    P+ +D  +S+   L Q     K I I      N+  
Sbjct: 386 GASLLRQILTFSRGFTPKQD----PILVDSLLSDITHLAQETFP-KSITIDNFIPPNLWA 440

Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIII--------------STTHTSNEEVILRVR 742
           I  D   + Q+ +N+  N     P GG + +               T       V++ V 
Sbjct: 441 IRGDTTQIHQVLMNLCLNGRDAMPDGGNLTLTAQNMVIDECYTSMETNAQPGLYVVITVS 500

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTGVG+     ++  +PF     S +  G+GTGLGL +   +V  + G   + S P KG+
Sbjct: 501 DTGVGIPEPIKKRIFEPFF----SSKELGKGTGLGLSIVMNIVKNHGGFIKVLSEPGKGS 556

Query: 803 LIEIIFPLYDTS 814
             ++  P  + S
Sbjct: 557 QFQVFLPAVNIS 568



 Score = 68.5 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 25/213 (11%), Positives = 67/213 (31%), Gaps = 18/213 (8%)

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
                 +    A  +   +  W  E    ++    E      E      +  ++    I 
Sbjct: 13  AHYRWQNLQKSAEESSEPSTHWQTEIITELSIALEELRVATEE------LHEQNEQLDIA 66

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
           + + E        + E   DG  + + +G+I   N   S+L     + +  KP  +F+ +
Sbjct: 67  REEAEEVRQHYQDLFEFAPDGYIVTDEKGVIQEANEVASQLLNVQKKYLFNKPIDIFVAR 126

Query: 504 NTPSVMNHYLTEILSL--------DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555
               + N++ ++I             +       +   + +    + + +          
Sbjct: 127 IDQDIFNNHWSKIQKTLNNLGNYQPQKFIKSWEMILQPRHQDPFPVAVSVSVSVNIKGEI 186

Query: 556 L----TMHDISEWKQEKNKLSHAKKIAEKESSH 584
           +     + D+++ K+ + +LS    +    S  
Sbjct: 187 IKLRWLLRDLTQQKKTQEQLSEQAALLNVVSDA 219


>gi|319900835|ref|YP_004160563.1| histidine kinase [Bacteroides helcogenes P 36-108]
 gi|319415866|gb|ADV42977.1| histidine kinase [Bacteroides helcogenes P 36-108]
          Length = 375

 Score =  294 bits (752), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 82/383 (21%), Positives = 158/383 (41%), Gaps = 33/383 (8%)

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
           ++      +I+      + +I+R+  +  TN     + G    D  ++   +    N  S
Sbjct: 2   QMTNELFGAIMRNIHAYVLLIDRDFTVFYTN--YYDITGTEKPDKPKRVGDLLRCSNALS 59

Query: 508 V--------------MNHYLTEIL-SLDLRQTLEKITLGSTKEEKLLS----LRIIIKKL 548
                          +   + +   +      LE +      + K +     +     ++
Sbjct: 60  AAGGCGTHELCSVCPVRQAIEQAYCARRNFVDLEAVLNVKGADGKAVECDTYVSGEYMEI 119

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
               C  +T+HDI+  KQ + +L  A++ AE     KS FLA +SHEIRTPL AI+GFSE
Sbjct: 120 EGRDCMVITVHDITRLKQVEVELRQAREKAENADRSKSVFLANMSHEIRTPLNAIVGFSE 179

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
           ++              ++   +  +  ++  ++ D+LD+SKIE+G +   F  + +++ +
Sbjct: 180 LLA----SASSEEEKAQFLGIVQNNNEMLQQLIADILDLSKIEAGTLEFVFSDIDINQLM 235

Query: 669 SEAISLVQLYANEKR--ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726
           S+     ++   E+   + +          +  D   + Q+  N ++NA+ FT  G  I 
Sbjct: 236 SDLEQQFRMRLKEQGSAVQVIRETPPEGCVMHMDRNRLAQVIANFMTNAMKFTDEGS-IT 294

Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
           +      +      V+DTG G+   +L      F ++        +GTGLGL + + +V 
Sbjct: 295 LGYRTNEDGF-YFYVKDTGSGIPKEKLPTIFDRFVKLEQ----EKKGTGLGLSICQTIVS 349

Query: 787 ANMGKFYIFSTPAKGTLIEIIFP 809
              GK  + S   KG+      P
Sbjct: 350 KLGGKIGVDSEVGKGSTFWFTLP 372


>gi|107101602|ref|ZP_01365520.1| hypothetical protein PaerPA_01002646 [Pseudomonas aeruginosa PACS2]
          Length = 640

 Score =  294 bits (752), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 80/493 (16%), Positives = 174/493 (35%), Gaps = 37/493 (7%)

Query: 335 VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394
           + S G++   +     L  + + + +      +              + +    ++    
Sbjct: 22  LDSAGHIASWSAGAARLFGHDASEILGR--DYACFHTRKDRDAGVPQQALRQADAEGR-- 77

Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
                   ++ N +   A   I     +   + +    +  +  + R  K  +     Q 
Sbjct: 78  -FETEGWRVRSNGKRFWAQVVIDAI-RDSQGQLLGFAQLIHDLSEGRAAKEALRRSQEQF 135

Query: 455 CSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
             ++++ +D  I +++  G I + N    ++ GY  E+++ + F+ F             
Sbjct: 136 RLLVQSVTDYAIYMLDHRGRITNWNLGAQRIKGYLPEEVIGRHFSCFYTPEDREAGEPA- 194

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKN 569
             + + +     EK      K+       ++I  +  S    +       DI+   + + 
Sbjct: 195 RGLAAAEREGRFEKEGWRVRKDGSRFWANVVIDPIRDSDGRLIGFAKVTRDITHRIEAER 254

Query: 570 KLSHAKKIAEKESSH--KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
           +L  A++   +             V+H+    LT IIG   ++K +  G   + R  +  
Sbjct: 255 ELERARQELFQAQKMESLGHLTGGVAHDFNNLLTVIIGSLGLLKKRLPG---DQRTADLL 311

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
                +     ++   +L  ++    K  L  +P ++ + +     L+        + I 
Sbjct: 312 QNALEAAQRGANLTQRMLSFAR----KQRLDPQPCAIPDLLRGMTDLLIHSL-GPSVSIE 366

Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST-----------THTSNEE 736
           T F  ++   L D   ++   +N+ +NA    P+GG+I+ S                   
Sbjct: 367 TRFPLDLDLGLTDANQLELSIINLATNARDAMPNGGRIVFSASNQRVPADNPHRLAPGNY 426

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           + L + DTG GM    L +A++PF          G GTGLGL +   + +   G+  + S
Sbjct: 427 ICLSISDTGSGMDEETLRRAVEPFYTTKG----IGRGTGLGLSIVDGLAEQLGGRLTLES 482

Query: 797 TPAKGTLIEIIFP 809
            P  GT   I  P
Sbjct: 483 QPGVGTTANIWIP 495



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/244 (10%), Positives = 74/244 (30%), Gaps = 8/244 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D+ G++   S    +  G+ A +++G            D       L +       +T 
Sbjct: 22  LDSAGHIASWSAGAARLFGHDASEILGRDYACFHTRKDRDAGVPQQALRQADAEGRFETE 81

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
            W +          +    I     +  GF    ++H        +   +R  ++F  L 
Sbjct: 82  GWRVRSNGKRFWAQVVIDAIRDSQGQLLGFAQ--LIHDLSEGRAAKEALRRSQEQFRLLV 139

Query: 209 EIKKGHSS-VEKEKYDIFSQQSPPPHLR--MKNKVSS--LTEYYAHKDDVLKTEKYPLLT 263
           +    ++  +   +  I +       ++  +  +V     + +Y  +D         L  
Sbjct: 140 QSVTDYAIYMLDHRGRITNWNLGAQRIKGYLPEEVIGRHFSCFYTPEDREAGEPARGLAA 199

Query: 264 SEESSLPEQEDFH-TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
           +E     E+E +    + +++        ++++      +       +     +      
Sbjct: 200 AEREGRFEKEGWRVRKDGSRFWANVVIDPIRDSDGRLIGFAKVTRDITHRIEAERELERA 259

Query: 323 PETV 326
            + +
Sbjct: 260 RQEL 263



 Score = 68.5 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 24/239 (10%), Positives = 50/239 (20%), Gaps = 5/239 (2%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + +D  G +   +    +  G    ++IG            +       L   +     
Sbjct: 147 IYMLDHRGRITNWNLGAQRIKGYLPEEVIGRHFSCFYTPEDREAGEPARGLAAAEREGRF 206

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +   W +         ++   PI   +    GF       V R         + L++   
Sbjct: 207 EKEGWRVRKDGSRFWANVVIDPIRDSDGRLIGF-----AKVTRDITHRIEAERELERARQ 261

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
            L + +K  S             +    +     +         +   L           
Sbjct: 262 ELFQAQKMESLGHLTGGVAHDFNNLLTVIIGSLGLLKKRLPGDQRTADLLQNALEAAQRG 321

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
            +       F                L+  +      L            D    LT  
Sbjct: 322 ANLTQRMLSFARKQRLDPQPCAIPDLLRGMTDLLIHSLGPSVSIETRFPLDLDLGLTDA 380


>gi|224535753|ref|ZP_03676292.1| hypothetical protein BACCELL_00617 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522613|gb|EEF91718.1| hypothetical protein BACCELL_00617 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 709

 Score =  293 bits (751), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 88/392 (22%), Positives = 166/392 (42%), Gaps = 16/392 (4%)

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFG-YPVE 490
           I          +  +++    +  +L+  +  I + + +   +L  N+   +  G     
Sbjct: 197 IVSTATKRWQVETSLQLSQRTMQKVLDNINANIFVCDYDTQKVLFANKPFREEAGQVSGN 256

Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL-RIIIKKLP 549
               K     L           L  + +      +      +   E+  ++  + IK L 
Sbjct: 257 AECWKMLNAGLNGLCAHCPKPQL--LDADRKFTGVHFWEDYNPITERWYTIQSMAIKWLD 314

Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                     DI+  KQ + +L  AK+ AE+    KS FLA +SHEIRTPL AI+GFS +
Sbjct: 315 GRWAIMELATDITTRKQVELELILAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSL 374

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           +         +     Y + ++ +  L+L++++D+LDISKIE+G + L    V +     
Sbjct: 375 LAE-----ADDDERESYMSLVEENNELLLNLISDILDISKIEAGTVELIITRVDVARLCR 429

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
           E IS      +E+ + +R   ++    + AD   + Q+  N ++NA+ FT  G  + +S 
Sbjct: 430 EVISTCSHKKHEEAVGLRFDESSPQIMVDADKNRIMQVLSNFITNALKFTTKGS-VTLSY 488

Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
               +  +   V DTG G+   +  +    F ++ +      +G GLGL + +++V+   
Sbjct: 489 RLEDDGLLHFCVTDTGKGIPAEQQHEIFSRFVKLDSF----SQGAGLGLSICQSLVERMG 544

Query: 790 GKFYIFSTPAKGTLIEIIFP-LYDTSHPHDCI 820
           G+  + S   +G+      P   D S   D +
Sbjct: 545 GQIGVNSREGEGSCFWFTHPYTLDASLDSDAV 576


>gi|254445248|ref|ZP_05058724.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198259556|gb|EDY83864.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 800

 Score =  293 bits (751), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 102/470 (21%), Positives = 191/470 (40%), Gaps = 43/470 (9%)

Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399
            + +AN +          + +     L   +   ++S +     V +   +   I     
Sbjct: 56  EIQHANAALEESFNPNDRNPLL---WLEQRISDNQMSSSGLSGHVWVPTPNGAPIPGFMA 112

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459
           L        +++     P +         P +G        +  +  +++         E
Sbjct: 113 LRP----SASAVIGIIRPLDSTQASNLAHPDSG--------KKTEHGLQLS--------E 152

Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGYPV-EDILRKPFTVFLEQNTPSVMN-HYLTEIL 517
            +S+G+A I+ +GI+   N A ++   +    +++  P       +         L  + 
Sbjct: 153 FSSEGLAAISPQGILEFLNPAFAQAHSHDSVAELVGTPLKSLFNPDELRRYESEILPSME 212

Query: 518 SLDLRQ--TLEKIT-LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK-----QEKN 569
                      +   +    +  LL      +  P +      +   +E       Q   
Sbjct: 213 FTGNWSGPFANRDISIELRPDGGLLFSSKEAQSAPQALDTYEEVKQETEQLYQQLDQAIA 272

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           K + A   AE  +  KS FLA +SHEIRTP+ A+IG + V+   +     +    +Y   
Sbjct: 273 KANQAALEAELANQAKSSFLASMSHEIRTPMNAVIGLTGVLLETQI----DDDQRDYLQT 328

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I  SG+ +L ++ND+LD SKIES KM L   P+     V EA+ L+   A+ K + +   
Sbjct: 329 IRASGDSLLVLINDILDFSKIESDKMELEERPIDPRCCVEEALELLAEKASSKGLELCYE 388

Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDT 744
            + +IP  IL D   ++QI +N++ NAI FT  G QI +       ++    +   V+D+
Sbjct: 389 ASEDIPFGILGDATRLRQILVNLIGNAIKFTEKG-QIEVLLKTRETDQRNCVIEFTVKDS 447

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
           G+G+   +  +  K F Q+ +S   +  GTGLGL ++K + +   G+  +
Sbjct: 448 GIGIPADKQSRLFKSFSQVDSSTTRKYGGTGLGLAISKKLTELMGGEMRV 497


>gi|323698962|ref|ZP_08110874.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           sp. ND132]
 gi|323458894|gb|EGB14759.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           desulfuricans ND132]
          Length = 753

 Score =  293 bits (751), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 83/531 (15%), Positives = 188/531 (35%), Gaps = 43/531 (8%)

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLT 352
               ++F  +  R         D+ E       D  P    V      +   N ++    
Sbjct: 251 GTLGQAFNMMGKRVSDKHRELLDQRE-EYRNLFDNVPCLVSVVDADYRIIRHNSAYERHF 309

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
                       G           +  A+ PV     D    +  +    +  +      
Sbjct: 310 GLPD--------GKRCWQVNKGRLEKCAVCPVDRTFRDGR--SHMSEESGMSKDGRRIHW 359

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE- 471
           + +      ++  + +    +  +    R  + K+     +  +I ++  + + +++R+ 
Sbjct: 360 IVYTS-PVKDKTGKVVAAMEMMVDITHRRELESKLAASEHRYHAIFDSIPNAVFVLDRQT 418

Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
             IL+ N +  +++G+   ++  + F  F  ++        +     ++L   ++     
Sbjct: 419 LEILNCNESSQEMYGWSQLEMRGRSFMAFFREDEAGDWEEAVRTQAEIELCTHVD----- 473

Query: 532 STKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
            + +   + L I   +   +    +T  D++   + + +L  A K+         +    
Sbjct: 474 KSGKPFFVFLSISPARFEGNDTLIVTCTDVTRKVEVEQQLIQASKMTT-----LGEMSTG 528

Query: 592 VSHEIRTPLTAIIGFSEVIKN--QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
           V+HE+  PLT +   S ++    +    +      E A  I    +    I+  + +  +
Sbjct: 529 VAHELNQPLTILQAISNLLTRKIEHNREVSPEIMREMAEGISTHVDRAAKIIEHMREFGR 588

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709
               K +L   PV ++E +               I +      N+P I+AD   ++Q+ +
Sbjct: 589 ----KSDLRTMPVQVNEVLERGFEFFSQQLQVHNIRVVWELEENLPLIMADSNRLEQVVI 644

Query: 710 NILSNAIHFTPS--------GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761
           N+L NA                +I++  + +++E ++ R+ DTG G+     E+  +PF 
Sbjct: 645 NLLLNARDAIEDRWKGVKDADKRILLQ-SFSTHERIVFRICDTGAGIPPAIRERLFEPFF 703

Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
                    G+GTGLGL ++  +V    GK    +    G   EI FP  +
Sbjct: 704 TTKG----VGKGTGLGLSISYGIVTDYGGKIKADAWEEGGACFEIAFPRAE 750


>gi|301301240|ref|ZP_07207395.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300851116|gb|EFK78845.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 358

 Score =  293 bits (751), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 79/361 (21%), Positives = 156/361 (43%), Gaps = 24/361 (6%)

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
              +  S+LE    GI +I+ +  +  +N      F +   +   + +  ++       +
Sbjct: 16  RKREYLSLLEYIDIGILVIDYKDRLTMSNELGKDFFDFD-NEWKNQDYQNYIYNLDVRKL 74

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT-MHDISEWKQEK 568
              +        +Q      L     +K++ +  I   +       +  + D++  K+ +
Sbjct: 75  IEQVKLTKEDKKKQI----VLKVDTVQKIVEVSAIYIPIDSKRYLIMLMLRDLTAQKEVE 130

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
            K              + DF+  +SHEI+TP+TAI GFSE + +            ++  
Sbjct: 131 KK--------------QLDFVGNLSHEIKTPITAITGFSETLLDGALN--DKEVSKQFIE 174

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I      + ++V+D++ IS++   + NL+ E V++ + V + + L      +KR+ +R 
Sbjct: 175 IIHDESTKLSNLVDDMITISRLNEHE-NLNIELVNIFKLVKDTLQLFSHEIEKKRLNVRI 233

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748
                +  +  D   +K I  N++ NAI +    G+I I   +    E +  + DTG+G+
Sbjct: 234 EIDEEL-SLYCDKLKLKHIITNLIQNAIRYNLENGEIKIKVQNDKKNEWVFVISDTGIGI 292

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           ++ + E+  + F ++  S      GTGLGL + K  VDA  G+  + S   KGT   +I 
Sbjct: 293 SDEDKERIFERFYRVDKSHSKAVGGTGLGLAVVKESVDALSGRIKVKSQINKGTTFYVIL 352

Query: 809 P 809
           P
Sbjct: 353 P 353


>gi|295704436|ref|YP_003597511.1| sporulation kinase KinA [Bacillus megaterium DSM 319]
 gi|294802095|gb|ADF39161.1| sporulation kinase KinA [Bacillus megaterium DSM 319]
          Length = 574

 Score =  293 bits (751), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 87/498 (17%), Positives = 184/498 (36%), Gaps = 35/498 (7%)

Query: 315 FDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
            ++ E + P           V   G     NP+F     +   +  +    +        
Sbjct: 106 QEKKEQIQPFIYHNADAVAVVDLEGKTLQVNPAFENTFGWTFEEIHQKPLPIIPSFL--- 162

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
                 +  +                     +    + ++   F   N     +    + 
Sbjct: 163 ---KEPVCELHKTIQSGESKT-EFETVRQHKDGH-LINVSVTLFRVENMNDWPLCIAFVY 217

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDIL 493
            +    +  +  ++    +  S++E + + I +   EG I   N A +K  GY   +D+L
Sbjct: 218 RDITSRKQAETDLKESEQRYRSLIELSPEAIIVH-SEGKIDYINPAGAKALGYKSPQDVL 276

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII--IKKLPFS 551
                 F+  +   V+   +  + + +    L++      K+   +    I         
Sbjct: 277 GACVYQFVHPDYYDVVKQRIYRMKTENKSVDLQEEKFI-HKDGHTIDAETIAFPIPYMGK 335

Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
               +   DI+E K+ +  L         + S      A ++HEIR PLTA+ GF +++K
Sbjct: 336 QAIQVLFRDITERKKTEKLL-----RESAQLSLVGQLAAGIAHEIRNPLTAVKGFMQLLK 390

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
                P        Y   I+   + +  I ++ L ++K ++           + + +   
Sbjct: 391 ETSGQPY-------YVEMINHELDRIELITDEFLSLAKPQAKTYKDKH----IQDILENT 439

Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
           + L ++    ++I ++     ++P ++ +   +KQ+  NI  NA+   PSGG + I    
Sbjct: 440 LKLAEVQGITEKIHVKKEIDLHLPLVICEENQLKQVFSNIFKNAVESMPSGGTVTIQLKR 499

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
            + E +++R  D G G+T   ++   KPF         + +GTGLGL +   ++  + G+
Sbjct: 500 FNQENLVVRFSDEGPGITQERMQHLGKPFY------STKEKGTGLGLMVCYKIIREHKGE 553

Query: 792 FYIFSTPAKGTLIEIIFP 809
               S   KGT ++I+ P
Sbjct: 554 INFVSKLGKGTTVDILLP 571



 Score = 48.5 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 36/279 (12%), Positives = 82/279 (29%), Gaps = 22/279 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG-KT 147
           +D  G   +++     T G    ++    L  +      +P   +   ++   +    +T
Sbjct: 126 VDLEGKTLQVNPAFENTFGWTFEEIHQKPLP-IIPSFLKEPVCELHKTIQSGESKTEFET 184

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIV-----HVNRVDNDPRALGKRLDK 202
                +G  + V + L                 + +                   K  ++
Sbjct: 185 VRQHKDGHLINVSVTLF---------RVENMNDWPLCIAFVYRDITSRKQAETDLKESEQ 235

Query: 203 KFSHLHEIKKGHSSVEKEK---YDIFSQQSPPPHLRMKNKVSSLTEYYAHKD--DVLKTE 257
           ++  L E+      V  E    Y   +      +   ++ + +    + H D  DV+K  
Sbjct: 236 RYRSLIELSPEAIIVHSEGKIDYINPAGAKALGYKSPQDVLGACVYQFVHPDYYDVVKQR 295

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
            Y + T  +S   ++E F   + +    +     +    K++ + L              
Sbjct: 296 IYRMKTENKSVDLQEEKFIHKDGHTIDAETIAFPIPYMGKQAIQVLFRDITERKKTEKLL 355

Query: 318 GENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKS 356
            E+     V +       +   N   A   F+ L K  S
Sbjct: 356 RESAQLSLVGQLAAGIA-HEIRNPLTAVKGFMQLLKETS 393


>gi|168818996|ref|ZP_02830996.1| phosphate regulon sensor protein PhoR [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205344012|gb|EDZ30776.1| phosphate regulon sensor protein PhoR [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|320084672|emb|CBY94463.1| positive and negative sensor protein for pho regulon [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
          Length = 431

 Score =  293 bits (751), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 73/427 (17%), Positives = 156/427 (36%), Gaps = 37/427 (8%)

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             +L       I     L  + W     L +         +        G+    +  + 
Sbjct: 33  WFLLAAVTGLLIWHFWNLLRLSW----WLWVDRSMTPPPGRGSWEPLLYGLHQMQLRNKK 88

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            +R++   + +  S  E+  D + +   EG I   N    ++ G    D   +     L 
Sbjct: 89  RRRELGNLIKRFRSGAESLPDAVVLTTEEGGIFWCNGLAQQILGLRWPDDNGQNILNLLR 148

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
               +               +   +         + L +R++           +   D++
Sbjct: 149 YPEFTQYL----------KTRDFTRPLHLVLNTGRHLEIRVMPY---TDKQLLMVARDVT 195

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  Q +                + +F A VSHE+RTPLT + G+ E+++ Q        +
Sbjct: 196 QMHQLEG--------------ARRNFFANVSHELRTPLTVLQGYLEMMQEQALEGATREK 241

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                + +      +  +V  LL +SKIE+    L  E V +   +       Q  + +K
Sbjct: 242 A---LHTMREQTYRMEGLVKQLLTLSKIEAAPALLLNEKVDVPMMLRVVEREAQTLSQQK 298

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
                    +++  +L +   ++    N++ NA++ TP+G  I +S    ++      ++
Sbjct: 299 H-TFTFEVDDSL-SVLGNEEQLRSAISNLVYNAVNHTPAGTHITVSWRRAAHG-AEFCIQ 355

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G G+    + +  + F ++  ++  +  G+GLGL + K  ++ +  +  I S+P KGT
Sbjct: 356 DNGPGIAAEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHALNHHESRLEIDSSPGKGT 415

Query: 803 LIEIIFP 809
               + P
Sbjct: 416 RFSFVLP 422


>gi|89098586|ref|ZP_01171469.1| sensory transduction histidine kinase; sporulation kinase A
           [Bacillus sp. NRRL B-14911]
 gi|89086831|gb|EAR65949.1| sensory transduction histidine kinase; sporulation kinase A
           [Bacillus sp. NRRL B-14911]
          Length = 469

 Score =  293 bits (751), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 90/489 (18%), Positives = 181/489 (37%), Gaps = 36/489 (7%)

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
           + P    +     +   N +F     Y     +E   GL T+ D     D      ++  
Sbjct: 10  RIPQTVVIGHIDQVI-VNEAFCKFLGYS----MEEWAGL-TIEDISHPDDYKKDLELLNE 63

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
             D            I  +  +             +  ++    G   +  + +  + K 
Sbjct: 64  ILDGKRTEYELEKRYICKDGSHKTGQ-LNLSLVKGESADDQYMFGQIVDITEQKRLESKR 122

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
           E        + +  SD I +   +   L  + +V+++ GY  +++L       +  +   
Sbjct: 123 EESEQNYRLLADNISDLIILHKYDATYLYASPSVNRILGYEPDEMLELNAFKLIHPDDIE 182

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF-----SSCYSLTMHDIS 562
            +      +L +     +        K+   + +   +K +        +       DI 
Sbjct: 183 EVRRRYQLMLRIGEPLLITHRV--KKKDGSYIWMESHVKGIDEYTFESGAQILSVSRDIQ 240

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  +    L  ++K+A           A V+HEIR PLT I GF ++  + R        
Sbjct: 241 QRIETNELLRRSEKLAVV-----GQMAAAVAHEIRNPLTPIKGFMQLFSDGRDFNPA--- 292

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
              +++ I    N + +I+ + L ++K  S K+ +    + L++ +   + L+   A   
Sbjct: 293 ---FSSIIINEINRIDNIITEFLALAKPHSTKVEV----LDLNDVIRHVVDLMMPQALMN 345

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
              +     N    +L D  S+KQ+ +NI+ NA+      G  IIST     E   + ++
Sbjct: 346 NKELTFEPGNGPYPLLGDPNSLKQLFINIIQNALDAIEEKGSSIISTVKADGELCAI-IK 404

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D+G G+    L    +PF         + +GTGLGL  +  + D + G+  + S   KGT
Sbjct: 405 DSGCGIPAERLANLGEPFY------STKEKGTGLGLMTSYKIADDHHGRVKVESDEGKGT 458

Query: 803 LIEIIFPLY 811
            + + FP++
Sbjct: 459 TVRVYFPVH 467



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/280 (11%), Positives = 82/280 (29%), Gaps = 30/280 (10%)

Query: 96  KEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNT-WYGKTTLWPIE 153
             ++E   K +G    +  G+ + D+S       +   + ++L  + T +  +      +
Sbjct: 23  VIVNEAFCKFLGYSMEEWAGLTIEDISHPDDYKKDLELLNEILDGKRTEYELEKRYICKD 82

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
           G++    ++L+ +   S + ++     FG +          +  +  ++ +  L +    
Sbjct: 83  GSHKTGQLNLSLVKGESADDQYM----FGQIVDITEQKRLESKREESEQNYRLLADNISD 138

Query: 214 HSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLK-TEKYPLLTSEESSL 269
              + K                       +        H DD+ +   +Y L+      L
Sbjct: 139 LIILHKYDATYLYASPSVNRILGYEPDEMLELNAFKLIHPDDIEEVRRRYQLMLRIGEPL 198

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFE-YLSHRNHPSLSAYFDEGENLTP--ETV 326
                    + +    + +   +   + ES    LS           +E    +     V
Sbjct: 199 LITHRVKKKDGSYIWMESHVKGIDEYTFESGAQILSVSRDIQQRIETNELLRRSEKLAVV 258

Query: 327 DKCPIPFF---------------VYSHGNLFYANPSFLLL 351
            +                     ++S G     NP+F  +
Sbjct: 259 GQMAAAVAHEIRNPLTPIKGFMQLFSDGR--DFNPAFSSI 296



 Score = 43.5 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 15/114 (13%), Positives = 36/114 (31%), Gaps = 4/114 (3%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR-QNTWYGKTTLW 150
                  S  + + +G    +M+ +    +     I+       L+ R          + 
Sbjct: 146 DATYLYASPSVNRILGYEPDEMLELNAFKLIHPDDIEEVRRRYQLMLRIGEPLLITHRVK 205

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
             +G+  Y+ ++     I     E SG +   +    +   +   L +R +K  
Sbjct: 206 KKDGS--YIWMESHVKGIDEYTFE-SGAQILSVSRDIQQRIETNELLRRSEKLA 256


>gi|229031295|ref|ZP_04187301.1| hypothetical protein bcere0028_33480 [Bacillus cereus AH1271]
 gi|228730053|gb|EEL81027.1| hypothetical protein bcere0028_33480 [Bacillus cereus AH1271]
          Length = 526

 Score =  293 bits (751), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 96/528 (18%), Positives = 199/528 (37%), Gaps = 39/528 (7%)

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTK 353
           +S +   + +                +     +  P     +   G + + NPS   +  
Sbjct: 13  SSTQKKRHPNISRRLRKHIQDCSLTEMYASLFEHNPDSIISLNLEGVILHINPSAERILG 72

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
           Y S++ +E    +S L       + +  + V+    +         + +I       L +
Sbjct: 73  YTSLE-LEQKNIISIL-------EAHISEQVIQNIKNTEADNQQEYMLSIYHKNGFLLDV 124

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
                    Q         ++P +   RI +  ++    +L +++ +    +   + EG 
Sbjct: 125 VTKLVPIFIQNRLTGVYAIMKPLEKSERI-ESMLKESEKRLRTLVNSMPAFVIFKDHEGR 183

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN----HYLTEILSLDLRQTLEKIT 529
            L  N      F +       K  +  ++ N            + E+     RQ L    
Sbjct: 184 WLEANNYALSCFNFHHVPYHGKKDSELIQYNEAYREAFLHCEEVDELAWQ-QRQILHGEE 242

Query: 530 LGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
               +++  L L I    L           +   D++E K+ +  L  ++K+A       
Sbjct: 243 FIIHRDDFDLILSISKVPLYHPDGSRKGLIVMGRDVTELKETEKLLRKSEKLAVV----- 297

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
               A ++HEIR PLT++ GF  ++      P  +     Y + +    + +  I +  +
Sbjct: 298 GQLTAGIAHEIRNPLTSLKGFLTLLL-----PEISEENKWYVDVMLSEISQMESITSQFM 352

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
            +SK +     L  +  ++   + E ++ +   A    + I     +    I  D   +K
Sbjct: 353 AMSKPQ----VLSIKTCNIQALIEEVVTFILPTAIMHSVHIIMDHFDYKHDIQCDGNQLK 408

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           Q+ +NIL NAI   P+GG + I T    +  +++R+ D G G+    + +  +PF     
Sbjct: 409 QVFINILKNAIEAMPNGGNVYIQTKPFEDAFILIRIIDEGCGIPEDRISRLGEPFY---- 464

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
              ++ +GTGLGL +   +++ + GK +I S   KGT+++I  PL  +
Sbjct: 465 --SLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTIVDIQLPLSSS 510


>gi|330965670|gb|EGH65930.1| sensory box histidine kinase [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 595

 Score =  293 bits (751), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 89/427 (20%), Positives = 172/427 (40%), Gaps = 28/427 (6%)

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK--R 445
            + R      A         E    +T  P   A +      + GI  E +         
Sbjct: 193 IARRFGAPIEALAKAADRIGEGDYEVTL-PISSAAEMNLLTRRFGIMAEALRQHQATNVD 251

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           ++     +L ++L++  DG+ +I+R+G +   N    +  G+    + +           
Sbjct: 252 ELLAGQQRLQAVLDSIDDGLLMIDRQGHLEHLNPVAQRQLGWDESRLGQSLGEALSRPEL 311

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISE 563
              ++  L         + L         E +LL+  +              + +HD++E
Sbjct: 312 DEQLHLVLRGGTLERAPEDLAIEI---DGESRLLTYSMTPVSHTKGHILGAVMVLHDVTE 368

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            +  +                +S+F+ R SHE+RTP+T  +  +  +  +R       R 
Sbjct: 369 QRAFE--------------RVRSEFVLRASHELRTPVTG-MHMAFGLLQERLHFAPESRE 413

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            +  N +      ++ ++NDLL+ S+ ++G   L   P S++  + EA +  +  A E+ 
Sbjct: 414 ADLLNTVTEEMQRLMQLINDLLNFSRYQNGLQKLKLAPCSIETLLEEARARYEGQAQEQD 473

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
           I++       +PR+ AD   ++++  N+L NA+  TP  G I +       E  I+ V D
Sbjct: 474 IVLILDIQEPMPRLHADQSQLERVLDNLLDNALRHTPPSGLIRLQ-ARRHGERAIISVED 532

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
            G G+   +  +  +PF Q+      +  G GLGL L K +V  + G+  ++S P +GT 
Sbjct: 533 NGEGIAYGQQGRIFEPFVQV----GRKKGGAGLGLALCKEIVQLHGGRMGVYSRPGQGTQ 588

Query: 804 IEIIFPL 810
             +  PL
Sbjct: 589 FYMALPL 595



 Score = 46.2 bits (108), Expect = 0.021,   Method: Composition-based stats.
 Identities = 30/241 (12%), Positives = 69/241 (28%), Gaps = 9/241 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G+L+ ++    + +G    + +G  L +      +D       L+ R  T      
Sbjct: 274 IDRQGHLEHLNPVAQRQLGWDESR-LGQSLGEALSRPELDEQ---LHLVLRGGTLERAPE 329

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
              IE       +  +  P+        G     ++H          +  R +      H
Sbjct: 330 DLAIEIDGESRLLTYSMTPVSHTKGHILGA--VMVLHDVTEQRAFERV--RSEFVLRASH 385

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           E++   + +      +  +    P  R  + ++++TE    +   L  +       +   
Sbjct: 386 ELRTPVTGMHMAFGLLQERLHFAPESREADLLNTVTE-EMQRLMQLINDLLNFSRYQNGL 444

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
              +    +I       +  +                   P L A   + E +    +D 
Sbjct: 445 QKLKLAPCSIETLLEEARARYEGQAQEQDIVLILDIQEPMPRLHADQSQLERVLDNLLDN 504

Query: 329 C 329
            
Sbjct: 505 A 505


>gi|222148514|ref|YP_002549471.1| two component sensor kinase [Agrobacterium vitis S4]
 gi|221735500|gb|ACM36463.1| two component sensor kinase [Agrobacterium vitis S4]
          Length = 511

 Score =  293 bits (751), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 98/249 (39%), Positives = 156/249 (62%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I+E +  K+    A++ AE+ +  KS FLA +SHE+RTPL AI+GFSEV+  +  GPL N
Sbjct: 238 IAELEVAKSMSDEARRRAEEANMAKSRFLASMSHELRTPLNAILGFSEVMAQEVLGPLNN 297

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
           P Y EY+  I RSG  +L+++N++LD+S+IE+GK +L  E +SL E   + + +VQL A 
Sbjct: 298 PLYREYSGDIHRSGQHLLNLINEILDLSRIEAGKYDLSEESISLLEVAEDCVGMVQLRAK 357

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
            K I I   +  N+P + AD ++++Q+ LN+LSNA+ FTP GG+I++    T      + 
Sbjct: 358 AKDIKISQQYEINLPALWADEKALRQVVLNLLSNAVKFTPPGGEILVKVGWTVGGGQYVS 417

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           ++D G G+   E+   +  FGQ   + +   +GTGLGLP+ +A++  + G+F + S   +
Sbjct: 418 IKDNGPGIAEEEIPVVLSAFGQGSIAIKSAEQGTGLGLPIVQAILAKHGGEFKLKSKLRE 477

Query: 801 GTLIEIIFP 809
           GT +  I P
Sbjct: 478 GTEVIAILP 486


>gi|149276692|ref|ZP_01882835.1| PAS sensor signal transduction histidine kinase [Pedobacter sp.
           BAL39]
 gi|149232361|gb|EDM37737.1| PAS sensor signal transduction histidine kinase [Pedobacter sp.
           BAL39]
          Length = 671

 Score =  293 bits (751), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 94/698 (13%), Positives = 214/698 (30%), Gaps = 94/698 (13%)

Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS 242
           ++  +             + +   L              +    +      L   +K  +
Sbjct: 1   MIRPSDNAKIDENAITSSEARLRALVAASSDVIYSMSADWSEMRELDGRGILSDTDKPIT 60

Query: 243 LTEYYAHKDDVLKTEKYPL--LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF 300
                   +      +  +    S +     +      + +          + N      
Sbjct: 61  DWMSKYIPEQERGRVQAAIDEAISLKKVFQVEHRVFRADASWGWTLSRAIPIFNEHGAIT 120

Query: 301 EYLSHRNHPSLSAYFDEGENL-----------TPETVDKCPIPFFVYSHG-NLFYANPSF 348
           E+       +     ++                       P   +V+       YAN + 
Sbjct: 121 EWFGTAADITERKRAEQELRDAKEQSEHQKRVYETITGSTPDLIYVFDLDYRFTYANSAL 180

Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ-WNR 407
           L +        I      +             I  + L +           +        
Sbjct: 181 LTMWGKTWETAIGRNLLENGYEPWHAEMHEREIDEIKLTKQ-----PIRGEVSFPHAILG 235

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI---------- 457
           +       IP        E     G   +  + +  +  +     QL ++          
Sbjct: 236 KRVYDYILIPVLDEYGQVEA--VAGTTRDVTERKQWEESLAQSSEQLQAMNEELAATNEE 293

Query: 458 ---------------------------------------LEATSDGIAIINREGIILSTN 478
                                                  ++A   G   I     +  T+
Sbjct: 294 QAASNEELAATIEELAMVNQQLQTAHHKIEGAEESLRMAIDAGRLGTFYIGSSDQLFVTS 353

Query: 479 RAVSKLFGY-PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
             + + FG+ P E++  +     +  +    +   +    +   R  +E   +G   + K
Sbjct: 354 ARLKEFFGFLPKEEVSSEAALNQIHPDYRQEVFDMVKSAFARRSRLDIECPIIG-HHDGK 412

Query: 538 LLSLRII--IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
              +R I  ++    +  ++  +H+I+E KQ++ +              K+DF+  VSHE
Sbjct: 413 TRWVRAIGEMQHRDGNDYFTGVLHEITEKKQDEIR--------------KNDFIGMVSHE 458

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           ++TPLT++ G+ +V+   +     +   I      +     + +++N  L++S++ESGK+
Sbjct: 459 LKTPLTSMKGYIQVLL-MKLRQQDDGFVIGALEKANAQVAKMTNMINGFLNVSRLESGKI 517

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715
           ++  +   L   + EA            ++           + AD   + Q+  N++SNA
Sbjct: 518 HIDLKEFDLALLIKEAEEESLATITSHTVVFE---PVETTLVNADRDKIGQVIHNLISNA 574

Query: 716 IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           + ++P G  I +    +   +  + V+D G+G+   +L K    + ++  +Q     G G
Sbjct: 575 VKYSPPGSTINV-ACISDLNKANVHVKDQGMGIKPDDLSKIFDRYYRVEGNQTSSVSGFG 633

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
           +GL L   ++D + GK +  S   KG+      PL   
Sbjct: 634 IGLYLCSEIIDRHHGKIWAESEVDKGSTFSFSLPLSQV 671



 Score = 43.5 bits (101), Expect = 0.17,   Method: Composition-based stats.
 Identities = 38/301 (12%), Positives = 73/301 (24%), Gaps = 38/301 (12%)

Query: 36  TEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYL 95
           TE+ + E    D+ EQS    +  E+++ +            P        +  D     
Sbjct: 130 TERKRAEQELRDAKEQSEHQKRVYETITGS-----------TPD-----LIYVFDLDYRF 173

Query: 96  KEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP--NNHIGDLLKRQNTWYGKTTLWPIE 153
              +  L    G      IG  L +              I ++   +    G+ +     
Sbjct: 174 TYANSALLTMWGKTWETAIGRNLLENGYEPWHAEMHEREIDEIKLTKQPIRGEVSFPHAI 233

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
                    L  +P+     +     G                          L +  + 
Sbjct: 234 LGKRVYDYIL--IPVLDEYGQVEAVAG--TTRDVTERKQWEE----------SLAQSSEQ 279

Query: 214 HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE 273
             ++ +E      +Q+        N+  + T       +      +  +   E SL    
Sbjct: 280 LQAMNEELAATNEEQAA------SNEELAATIEELAMVNQQLQTAHHKIEGAEESLRMAI 333

Query: 274 DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF 333
           D   +                  KE F +L      S +A      +   E  D     F
Sbjct: 334 DAGRLGTFYIGSSDQLFVTSARLKEFFGFLPKEEVSSEAALNQIHPDYRQEVFDMVKSAF 393

Query: 334 F 334
            
Sbjct: 394 A 394


>gi|213971024|ref|ZP_03399145.1| sensory box histidine kinase [Pseudomonas syringae pv. tomato T1]
 gi|301385587|ref|ZP_07234005.1| sensory box histidine kinase [Pseudomonas syringae pv. tomato
           Max13]
 gi|302058829|ref|ZP_07250370.1| sensory box histidine kinase [Pseudomonas syringae pv. tomato K40]
 gi|302132142|ref|ZP_07258132.1| sensory box histidine kinase [Pseudomonas syringae pv. tomato NCPPB
           1108]
 gi|213924260|gb|EEB57834.1| sensory box histidine kinase [Pseudomonas syringae pv. tomato T1]
 gi|331014872|gb|EGH94928.1| sensory box histidine kinase [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 595

 Score =  293 bits (751), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 91/428 (21%), Positives = 178/428 (41%), Gaps = 30/428 (7%)

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK--R 445
            + R      A         E    +T  P   A +      + GI  E +         
Sbjct: 193 IARRFGAPIEALAKAADRIGEGDYEVTL-PISSAAEMNLLTRRFGIMAEALRQHQATNVD 251

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           ++     +L ++L++  DG+ +I+R+G +   N    +  G+    +  +     L   +
Sbjct: 252 ELLAGQQRLQAVLDSIDDGLLMIDRQGHLEHLNPVAQRQLGWDESRL-GQSLGEAL---S 307

Query: 506 PSVMNHYLTEILSLDL-RQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDIS 562
              ++  L  +L      +  E + +    E +LL+  +              + +HD++
Sbjct: 308 RPELDEQLHLVLRGGTLERAPEDLAIDIDGESRLLTYSMTPVSHTKGHILGAVMVLHDVT 367

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E +  +                +S+F+ R SHE+RTP+T  +  +  +  +R       R
Sbjct: 368 EQRAFE--------------RVRSEFVLRASHELRTPVTG-MHMAFGLLQERLHFAPESR 412

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             +  N +      ++ ++NDLL+ S+ ++G   L   P S++  + EA +  +  A E+
Sbjct: 413 EADLLNTVTEEMQRLMQLINDLLNFSRYQNGLQKLKLAPCSIETLLEEARARYEGQAQEQ 472

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
            I++       +PR+ AD   ++++  N+L NA+  TP  G I +       E  I+ V 
Sbjct: 473 DIVLMLDIQEPMPRLHADQSQLERVLDNLLDNALRHTPPNGLIRLQ-ARRHGERAIISVE 531

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G G+   +  +  +PF Q+      +  G GLGL L K +V  + G+  ++S P +GT
Sbjct: 532 DNGEGIAYGQQGRIFEPFVQV----GRKKGGAGLGLALCKEIVQLHGGRMGVYSRPGQGT 587

Query: 803 LIEIIFPL 810
              +  PL
Sbjct: 588 QFYMALPL 595



 Score = 46.9 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 29/241 (12%), Positives = 69/241 (28%), Gaps = 9/241 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G+L+ ++    + +G    + +G  L +      +D       L+ R  T      
Sbjct: 274 IDRQGHLEHLNPVAQRQLGWDESR-LGQSLGEALSRPELDEQ---LHLVLRGGTLERAPE 329

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
              I+       +  +  P+        G     ++H          +  R +      H
Sbjct: 330 DLAIDIDGESRLLTYSMTPVSHTKGHILGA--VMVLHDVTEQRAFERV--RSEFVLRASH 385

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           E++   + +      +  +    P  R  + ++++TE    +   L  +       +   
Sbjct: 386 ELRTPVTGMHMAFGLLQERLHFAPESREADLLNTVTE-EMQRLMQLINDLLNFSRYQNGL 444

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
              +    +I       +  +                   P L A   + E +    +D 
Sbjct: 445 QKLKLAPCSIETLLEEARARYEGQAQEQDIVLMLDIQEPMPRLHADQSQLERVLDNLLDN 504

Query: 329 C 329
            
Sbjct: 505 A 505


>gi|302341474|ref|YP_003806003.1| PAS/PAC sensor signal transduction histidine kinase [Desulfarculus
           baarsii DSM 2075]
 gi|301638087|gb|ADK83409.1| PAS/PAC sensor signal transduction histidine kinase [Desulfarculus
           baarsii DSM 2075]
          Length = 593

 Score =  293 bits (751), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 89/625 (14%), Positives = 200/625 (32%), Gaps = 52/625 (8%)

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
               E     +   +     ++       +R  N   +         +        L   
Sbjct: 3   MATAEQLAVLAQAMEHSPTAWAVTDEEGRVRRHNAAFAALLGLESGQEAAGRPWSHLSPV 62

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN---------HPSLSAYF 315
              +  E         +      +   +Q +        +                    
Sbjct: 63  ARRA-EESALLRQAGQDGRAVSTHKALVQRDGGLITVVDAAHPCQNGGFWHLLSPAVNRP 121

Query: 316 DEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
                     ++    P +V    + + + N + +      +  +               
Sbjct: 122 GLVNGRCQAMLEAFDDPIYVCDQDHNIEFLNQAMIRRLGRDATGE----------KCHQA 171

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
           +   + + P    +  +        +   + +      +   P    +     + +  + 
Sbjct: 172 IHGLDDVCPWCEGQKVQNGQTVRQEMQ--RSSDSRWYNVVCTPVFLPDG---RVARQTVF 226

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
            +    ++ ++ +   +     + E+   G+  ++    +   N A  K+ G      L 
Sbjct: 227 RDVTSQKLLEQHLRHALDSQRVLFESLPVGVLAVDEHYNVTQINPAAQKILGVNANQALG 286

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554
           +     +       +                +           L+ +R+    +  S   
Sbjct: 287 RYCHDVM-GCDNDPLCPLRRSAAEGRTAGPDDWHV--RDSRGALVDVRMWAAAIFDSDGR 343

Query: 555 ----SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
                    DISE K  +               H++  +A ++H+++TPL +I GF+ ++
Sbjct: 344 HLGGVEAFQDISEAKALE--------------RHRARIIAMLAHDMKTPLISIRGFANLL 389

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
                      R  +YA +I++    +   V+  L++S+++ G + L  E + L E ++ 
Sbjct: 390 LRDEDQAHAKNR-RKYAQFIEQEAARLDGFVHRFLEMSRLQDGALKLKPERLDLAERLAG 448

Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
            +  V+       + +    A     + AD   + +I  N+L NA+  +P+GGQ+ +S  
Sbjct: 449 VVEAVRPQFRAANVELLLE-APAPAPVEADAELLGRIFDNLLDNALQHSPTGGQVHVSV- 506

Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
                E  +RVRD G G+   EL    +PF +  NS+    +G GLGL  AKA+   + G
Sbjct: 507 IAEGGEAQVRVRDQGSGIPADELSLIFEPFFRGSNSKT--TQGYGLGLAAAKAIACLHGG 564

Query: 791 KFYIFSTPAKGTLIEIIFPLYDTSH 815
           +  + S P  G L  +  P+   S 
Sbjct: 565 RLVVDSQPGHGALFTLRLPISRPSQ 589



 Score = 65.4 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 44/509 (8%), Positives = 132/509 (25%), Gaps = 55/509 (10%)

Query: 89  IDAHGYLKEISEELPKTIGNYA-FKMIGMRLCDVSDIL-HIDPNNHIGDLLKRQNTWYGK 146
            D  G ++  +      +G  +  +  G     +S +    + +  +    +        
Sbjct: 26  TDEEGRVRRHNAAFAALLGLESGQEAAGRPWSHLSPVARRAEESALLRQAGQDGRAVSTH 85

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
             L   +G    + +  AA P   +N  F       +     V+            +   
Sbjct: 86  KALVQRDGGL--ITVVDAAHPC--QNGGFWHLLSPAVNRPGLVN-----------GRCQA 130

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH-KDDVLKTEKYPLLTSE 265
           + E       V  + ++I            ++          H  DDV    +   + + 
Sbjct: 131 MLEAFDDPIYVCDQDHNIEFLNQAMIRRLGRDATGEKCHQAIHGLDDVCPWCEGQKVQNG 190

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
           ++   E +               F            +    +   L  +     +     
Sbjct: 191 QTVRQEMQRSSDSRWYNVVCTPVFLP-DGRVARQTVFRDVTSQKLLEQHLRHALDSQRVL 249

Query: 326 VDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
            +  P+         N+   NP+   +    +   +                DN+ + P+
Sbjct: 250 FESLPVGVLAVDEHYNVTQINPAAQKILGVNANQALG------RYCHDVMGCDNDPLCPL 303

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
               ++     A      ++ +R   + +        +    ++       +  + +   
Sbjct: 304 RRSAAEGRT--AGPDDWHVRDSRGALVDVRMWAAAIFDSDGRHLGGVEAFQDISEAK--- 358

Query: 445 RKMEIEVMQLCSILEA-TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
             +E    ++ ++L       +  I          R  + L     +    K        
Sbjct: 359 -ALERHRARIIAMLAHDMKTPLISI----------RGFANLLLRDEDQAHAKN------- 400

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                   ++ +  +         + +   ++    +L++  ++L  +   +  +  +  
Sbjct: 401 --RRKYAQFIEQEAARLDGFVHRFLEMSRLQDG---ALKLKPERLDLAERLAGVVEAVRP 455

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARV 592
             +  N     +  A       ++ L R+
Sbjct: 456 QFRAANVELLLEAPAPAPVEADAELLGRI 484



 Score = 44.2 bits (103), Expect = 0.078,   Method: Composition-based stats.
 Identities = 27/377 (7%), Positives = 79/377 (20%), Gaps = 32/377 (8%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D    ++ +++ + + +G  A    G +       L        G  ++   T   +   
Sbjct: 143 DQDHNIEFLNQAMIRRLGRDA---TGEKCHQAIHGLDDVCPWCEGQKVQNGQTVRQEMQR 199

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
                ++     ++   P++  +   +      +              +        L E
Sbjct: 200 -----SSDSRWYNVVCTPVFLPDGRVARQT---VFRDVTSQKLLEQHLRHALDSQRVLFE 251

Query: 210 IKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
                     E Y++            +     +          D+              
Sbjct: 252 SLPVGVLAVDEHYNVTQINPAAQKILGVNANQALGRYCHDVMGCDNDPLCPLRRSAAEGR 311

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
           ++ P+              + +   + ++       +      S +   +          
Sbjct: 312 TAGPDDWHVRDSRGALVDVRMWAAAIFDSDGRHLGGVEAFQDISEAKALERHRARI---- 367

Query: 327 DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
               I    +       +   F  L                      + +       V  
Sbjct: 368 ----IAMLAHDMKTPLISIRGFANLLLRDEDQAHAKNRRKYAQFIEQEAAR--LDGFVHR 421

Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
           +         + +L   + +    LA          +            E +        
Sbjct: 422 FLEMSRLQDGALKLKPERLDLAERLAGVVEAVRPQFRAANV--------ELLLEAPAPAP 473

Query: 447 MEIEVMQLCSILEATSD 463
           +E +   L  I +   D
Sbjct: 474 VEADAELLGRIFDNLLD 490


>gi|221641063|ref|YP_002527325.1| Multi-sensor hybrid histidine kinase [Rhodobacter sphaeroides
           KD131]
 gi|221161844|gb|ACM02824.1| Multi-sensor hybrid histidine kinase precursor [Rhodobacter
           sphaeroides KD131]
          Length = 825

 Score =  293 bits (751), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 107/574 (18%), Positives = 197/574 (34%), Gaps = 41/574 (7%)

Query: 259 YPLLTSEESSLPEQEDFHTINLNQ-YTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
                    +   +E F  ++       +     L  N  +    L         A    
Sbjct: 3   AGATAIIGLANDARERFQQLDYIVTDGVQTRLSDLDGNLSQFASALGVTGSSPSPAAVRT 62

Query: 318 GENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
                 E + +                     +L      + I               + 
Sbjct: 63  SLRQLQEGLAQLDTAM------------AEAGVLWDPAYGEGIARLRQFERDRADLIAAP 110

Query: 378 NNAIKPVM--LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE- 434
           +  +   M  L R+      A A L         S  +       ++         G+  
Sbjct: 111 DATVTAAMPGLTRALPHLEQAVAELSATASADRESRNLENRAIIGSSIMRLVALTIGLVL 170

Query: 435 ----------PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
                        + +R           +L +I   ++D I + +    ++  NRA   +
Sbjct: 171 MLSAGSFQLLRLYLRSREQAEAAGRASARLEAIFRISADAILVTDWSARVIDCNRAALAI 230

Query: 485 FGYPVEDILRKPFTVFLEQNT-----PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
           FG+  E +        L            +   L       +   L         +    
Sbjct: 231 FGHQRERLAGADAMELLFPAELQGRQRMRVVDALRN-SDPRIDGPLRLELEAVHADGSRF 289

Query: 540 SLRIIIK--KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
            + + +   ++         M DIS  ++ + +L+ A+  A      K+DFLA +SHE+R
Sbjct: 290 PVEVSLAAARVEGEDIIVALMRDISARRRAERELTEARDRALAGEQTKADFLAVMSHEMR 349

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TPL  + G  E++         +PR  E  + +  S  ++LD VN +LDI++ E+     
Sbjct: 350 TPLNGLAGSLELLAQTPL----DPRQRELVSVLRASAEILLDHVNSVLDIARSEARPSVA 405

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTS-FANNIPRILADLRSVKQIALNILSNAI 716
                 LD  + + I+    +A      I        +  +  + + ++Q+ LN+L+NA+
Sbjct: 406 EMVDFDLDRLIEDCIANQSGFAAVVGNRIDHRPLTGPVGILNGEPQRLRQVLLNLLNNAV 465

Query: 717 HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
            FT   G+II+ +      +V +RV DTG+G+    LEK    F  +  S + R  GTGL
Sbjct: 466 KFT-RNGRIIVESEVQ-GADVEIRVLDTGIGIAPENLEKVFDDFVTLDASYERRSGGTGL 523

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           GL +A+ +     G   + STP +G+   +  PL
Sbjct: 524 GLGIARRLARIMGGDLTVQSTPGRGSRFTLRLPL 557



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/323 (8%), Positives = 64/323 (19%), Gaps = 40/323 (12%)

Query: 168 IYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ 227
           +   +   S F     V  +           R  ++     +     + V  +       
Sbjct: 34  LSDLDGNLSQFASALGVTGSSPSPAAVRTSLRQLQEGLAQLDTAMAEAGVLWDPAYGEGI 93

Query: 228 QS------------PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDF 275
                           P   +   +  LT    H +  +           ES   E    
Sbjct: 94  ARLRQFERDRADLIAAPDATVTAAMPGLTRALPHLEQAVAELSATASADRESRNLENRAI 153

Query: 276 HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV 335
              ++ +         L  ++        +      +                      V
Sbjct: 154 IGSSIMRLVALTIGLVLMLSAGSFQLLRLYLRSREQAEAAGRASARLEAIFRISADAILV 213

Query: 336 YS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY------- 387
                 +   N + L +  ++  + +  A  +  L  A             L        
Sbjct: 214 TDWSARVIDCNRAALAIFGHQR-ERLAGADAMELLFPAELQGRQRMRVVDALRNSDPRID 272

Query: 388 ----------RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
                      +D +       L   +   E+ +           +          E E 
Sbjct: 273 GPLRLELEAVHADGSRFPVEVSLAAARVEGEDIIVALMRDISARRRA---------EREL 323

Query: 438 VDTRINKRKMEIEVMQLCSILEA 460
            + R      E       +++  
Sbjct: 324 TEARDRALAGEQTKADFLAVMSH 346



 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/265 (6%), Positives = 56/265 (21%), Gaps = 15/265 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID--PNNHIGDLLKRQNTWYGK 146
            D    + + +       G+   ++ G    ++     +       + D L+  +     
Sbjct: 214 TDWSARVIDCNRAALAIFGHQRERLAGADAMELLFPAELQGRQRMRVVDALRNSDPRIDG 273

Query: 147 TTLWPIE---GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                +E         P++++         +        ++                  +
Sbjct: 274 PLRLELEAVHADGSRFPVEVSLAAARVEGEDII----VALMRDISARRRAERELTEARDR 329

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE------ 257
                + K    +V   +              +        +           E      
Sbjct: 330 ALAGEQTKADFLAVMSHEMRTPLNGLAGSLELLAQTPLDPRQRELVSVLRASAEILLDHV 389

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
              L  +   + P   +    +L++  +          +              +     E
Sbjct: 390 NSVLDIARSEARPSVAEMVDFDLDRLIEDCIANQSGFAAVVGNRIDHRPLTGPVGILNGE 449

Query: 318 GENLTPETVDKCPIPFFVYSHGNLF 342
            + L    ++          +G + 
Sbjct: 450 PQRLRQVLLNLLNNAVKFTRNGRII 474


>gi|300864253|ref|ZP_07109133.1| putative adenylate/guanylate cyclase [Oscillatoria sp. PCC 6506]
 gi|300337718|emb|CBN54279.1| putative adenylate/guanylate cyclase [Oscillatoria sp. PCC 6506]
          Length = 1140

 Score =  293 bits (751), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 72/272 (26%), Positives = 124/272 (45%), Gaps = 24/272 (8%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           + ++    L       ++    K +FLA  SHE+RTPL  IIG +E + +   G L + +
Sbjct: 421 QLQESFTSLETKNAELQQLDKLKDEFLANTSHELRTPLNGIIGIAESLIDGATGSLPD-K 479

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
            +     I  SG  + ++VND+LD SK+    M L  +P+ + E     ++L Q    +K
Sbjct: 480 TVSNLALIVSSGRRLSNLVNDILDFSKLSHNNMELEIKPIGMREISEVVLTLSQPLIGKK 539

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS--------- 733
            + +  + +  +P + AD   ++QI  NI+ NAI FT  G  + +S              
Sbjct: 540 SLQLINAISPEVPLVDADENRMQQILHNIIGNAIKFTEKG-IVEVSAEVVDSSSKLLQEG 598

Query: 734 -------------NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
                        N+ + + V DTG+G+   +LE+  + F Q   S      GTGLGL +
Sbjct: 599 YIKIVESNDSSTQNQRLAITVADTGIGIPEDKLERIFEAFEQGDGSTAREYGGTGLGLAV 658

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
            K +V+ + G+ ++ S    G+      P+  
Sbjct: 659 TKQLVELHQGEIWVSSKVGVGSKFIFTLPISQ 690


>gi|168237508|ref|ZP_02662566.1| phosphate regulon sensor protein PhoR [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168261174|ref|ZP_02683147.1| phosphate regulon sensor protein PhoR [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|194737079|ref|YP_002113429.1| phosphate regulon sensor protein [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197250186|ref|YP_002145380.1| phosphate regulon sensor protein [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|194712581|gb|ACF91802.1| phosphate regulon sensor protein PhoR [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197213889|gb|ACH51286.1| phosphate regulon sensor protein PhoR [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197289508|gb|EDY28871.1| phosphate regulon sensor protein PhoR [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|205349708|gb|EDZ36339.1| phosphate regulon sensor protein PhoR [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|322614681|gb|EFY11610.1| phosphate regulon sensor protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322618787|gb|EFY15675.1| phosphate regulon sensor protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322623494|gb|EFY20333.1| phosphate regulon sensor protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322629208|gb|EFY25987.1| phosphate regulon sensor protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322631928|gb|EFY28682.1| phosphate regulon sensor protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322637334|gb|EFY34036.1| phosphate regulon sensor protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322642020|gb|EFY38630.1| phosphate regulon sensor protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322646218|gb|EFY42732.1| phosphate regulon sensor protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322652516|gb|EFY48870.1| phosphate regulon sensor protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322653321|gb|EFY49654.1| phosphate regulon sensor protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322660530|gb|EFY56766.1| phosphate regulon sensor protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322664682|gb|EFY60875.1| phosphate regulon sensor protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322669265|gb|EFY65415.1| phosphate regulon sensor protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322670811|gb|EFY66944.1| phosphate regulon sensor protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322678951|gb|EFY75006.1| phosphate regulon sensor protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322681979|gb|EFY78004.1| phosphate regulon sensor protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322685192|gb|EFY81189.1| phosphate regulon sensor protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323194460|gb|EFZ79655.1| phosphate regulon sensor protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323197004|gb|EFZ82146.1| phosphate regulon sensor protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323203988|gb|EFZ89005.1| phosphate regulon sensor protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323206926|gb|EFZ91879.1| phosphate regulon sensor protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323211058|gb|EFZ95914.1| phosphate regulon sensor protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323214546|gb|EFZ99297.1| phosphate regulon sensor protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323223103|gb|EGA07446.1| phosphate regulon sensor protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323227052|gb|EGA11233.1| phosphate regulon sensor protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323230130|gb|EGA14250.1| phosphate regulon sensor protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323233868|gb|EGA17957.1| phosphate regulon sensor protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323238438|gb|EGA22496.1| phosphate regulon sensor protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323244126|gb|EGA28135.1| phosphate regulon sensor protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323246286|gb|EGA30269.1| phosphate regulon sensor protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323251912|gb|EGA35775.1| phosphate regulon sensor protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323257909|gb|EGA41588.1| phosphate regulon sensor protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323261078|gb|EGA44670.1| phosphate regulon sensor protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323264992|gb|EGA48491.1| phosphate regulon sensor protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323272555|gb|EGA55962.1| phosphate regulon sensor protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 431

 Score =  293 bits (751), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 72/427 (16%), Positives = 156/427 (36%), Gaps = 37/427 (8%)

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             +L       +     L  + W     L +         +        G+    +  + 
Sbjct: 33  WFLLAAVTGLLVWHFWNLLRLSW----WLWVDRSMTPPPGRGSWEPLLYGLHQMQLRNKK 88

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            +R++   + +  S  E+  D + +   EG I   N    ++ G    D   +     L 
Sbjct: 89  RRRELGNLIKRFRSGAESLPDAVVLTTEEGGIFWCNGLAQQILGLRWPDDNGQNILNLLR 148

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
               +               +   +         + L +R++           +   D++
Sbjct: 149 YPEFTQYL----------KTRDFTRPLHLVLNTGRHLEIRVMPY---TDKQLLMVARDVT 195

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  Q +                + +F A VSHE+RTPLT + G+ E+++ Q        +
Sbjct: 196 QMHQLEG--------------ARRNFFANVSHELRTPLTVLQGYLEMMQEQALEGATREK 241

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                + +      +  +V  LL +SKIE+    L  E V +   +       Q  + +K
Sbjct: 242 A---LHTMREQTYRMEGLVKQLLTLSKIEAAPALLLNEKVDVPMMLRVVEREAQTLSQQK 298

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
                    +++  +L +   ++    N++ NA++ TP+G  I +S    ++      ++
Sbjct: 299 H-TFTFEVDDSL-SVLGNEEQLRSAISNLVYNAVNHTPAGTHITVSWRRAAHG-AEFCIQ 355

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G G+    + +  + F ++  ++  +  G+GLGL + K  ++ +  +  I S+P KGT
Sbjct: 356 DNGPGIAAEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHALNHHESRLEIDSSPGKGT 415

Query: 803 LIEIIFP 809
               + P
Sbjct: 416 RFSFVLP 422


>gi|91790648|ref|YP_551600.1| PAS/PAC sensor hybrid histidine kinase [Polaromonas sp. JS666]
 gi|91699873|gb|ABE46702.1| PAS/PAC sensor hybrid histidine kinase [Polaromonas sp. JS666]
          Length = 799

 Score =  293 bits (751), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 84/376 (22%), Positives = 149/376 (39%), Gaps = 26/376 (6%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +   R +     QL  I +     IA ++ E      N A  + FG   + I  K     
Sbjct: 175 KERARALRASESQLRQITDTVPALIAYVDAEQRFQFHNLAYEEGFGLKRDQIHGKTMREM 234

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-------C 553
           +           + E LS      ++   +  T + +L    +                 
Sbjct: 235 MGDALYEKERGKIEEALSG---YAVQYDRVQKTADGQLRDYIMQYFPRYGEDQDEGKVVG 291

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
                 D++E ++                  KS+F++ VSHE+RTPLT+I G   +I   
Sbjct: 292 LFSLGTDVTELRRI--------------DRMKSEFVSTVSHELRTPLTSIRGSLGLIAGG 337

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
             G L              +   ++ ++ND+LD  KIESGKM+   + V L   +++A++
Sbjct: 338 VAGELP-AMAKSLVGIASNNCERLIRLINDILDSEKIESGKMHFELQQVELQPLLAQALA 396

Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
             + +A +  + +      +  R+  D   + Q+  N+LSNA+ F+P    + I     S
Sbjct: 397 ANEGFAGQHNVKLALDAPADAVRVSVDSDRLTQVVTNLLSNAVKFSPPASCVHIRL-LRS 455

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
              V + V D+G G+     ++  + F Q   S   +  GTGLGL +++A+V+   G   
Sbjct: 456 GGRVRVEVADSGPGILEEFRKRIFQKFSQADTSDTRQKGGTGLGLNISRAIVEQMGGSMG 515

Query: 794 IFSTPAKGTLIEIIFP 809
             +    GT+     P
Sbjct: 516 FTTKAGVGTVFHFELP 531


>gi|134300812|ref|YP_001114308.1| integral membrane sensor signal transduction histidine kinase
           [Desulfotomaculum reducens MI-1]
 gi|134053512|gb|ABO51483.1| integral membrane sensor signal transduction histidine kinase
           [Desulfotomaculum reducens MI-1]
          Length = 487

 Score =  293 bits (751), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 129/246 (52%), Gaps = 5/246 (2%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE-YAN 628
           +L       E +   + +F++ V+HEI+TPL  + GF+E + +   G + + +  E Y  
Sbjct: 244 RLQEKITQLEAQEQIRREFVSNVAHEIKTPLAIMQGFTETMLD---GLVKDEKERETYLG 300

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I    N +  +VN++LD+ ++E G  +   EP  L   +   +  +     +K + ++ 
Sbjct: 301 NILDEINRLKRLVNEILDLKRMEEGHFDFDKEPCDLKVLIYRVLGKLNQLVEQKGVNLKL 360

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748
           +    +  +  +   ++++ +N++ NA+  TP GG+I I  T  +N +V +R+RDTGVG+
Sbjct: 361 NLEKRLLPVTCNSDRMERVLINLIDNAVRHTPEGGKIFIYVTSKAN-QVHIRIRDTGVGI 419

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           +  +L    + F +   S+     GTGLGL + K +V+A+ G+ Y+ S   +GT   I+ 
Sbjct: 420 SPEDLPMIWERFYKADKSRSRTQGGTGLGLAIVKKIVEAHGGQIYVESKLNEGTSFNIVL 479

Query: 809 PLYDTS 814
           P+   S
Sbjct: 480 PVNQCS 485


>gi|119774168|ref|YP_926908.1| hybrid sensory histidine kinase BarA [Shewanella amazonensis SB2B]
 gi|119766668|gb|ABL99238.1| multi-sensor hybrid histidine kinase [Shewanella amazonensis SB2B]
          Length = 941

 Score =  293 bits (751), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 88/257 (34%), Positives = 131/257 (50%), Gaps = 10/257 (3%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
            L  AKK A++ S  KS+FLA +SHE+RTPL  +IGF+  +         +   +EY   
Sbjct: 297 ALDRAKKDAQEASRIKSEFLANMSHELRTPLNGVIGFARQLLKTPL----HSSQMEYIKT 352

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I+RS   +L I+ND+LD SK+E+ KM L   P  L  ++ + I+L+   A+ K +     
Sbjct: 353 IERSATSLLQIINDILDFSKLEANKMVLETMPFGLRASLEDTINLLAGSAHAKGLEFVVD 412

Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILR--VRDTG 745
              N+P  +  D+  + Q+  N+L NAI FT  G   + IS     +  + LR  V DTG
Sbjct: 413 VDANVPENLSGDVMRLGQVMTNLLGNAIKFTEEGSVHLKISLASLEDNNLTLRCEVTDTG 472

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM-VDANMGKFYIFSTPAKGTLI 804
           +G+   + E   + FGQ  +S   R  GTGLGL + K + V    G+    S   KG+  
Sbjct: 473 IGIDPEQQELLFQAFGQADSSISRRYGGTGLGLVITKRLVVQMMGGRIGFHSEVGKGSSF 532

Query: 805 EIIFPLYDTSHP-HDCI 820
               PL  +  P HD +
Sbjct: 533 WFTVPLQLSPFPVHDTL 549


>gi|154252838|ref|YP_001413662.1| histidine kinase [Parvibaculum lavamentivorans DS-1]
 gi|154156788|gb|ABS64005.1| histidine kinase [Parvibaculum lavamentivorans DS-1]
          Length = 539

 Score =  293 bits (751), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 88/365 (24%), Positives = 157/365 (43%), Gaps = 19/365 (5%)

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYL 513
              ++    G  I   +  IL +N    + F +  E +   K +          V     
Sbjct: 16  REAVDRLPGGFVIFGPDHEILLSNAQNERDFPFTNEALRQGKTYLEATHFAVKKVAPDLP 75

Query: 514 TEILSLDLRQTLE-----KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568
            E+     R   +     +     T    ++ +  I         +     D++  ++ +
Sbjct: 76  DEVALSVARNIHDTLAKGEPVELRTHLGTVMQVIEIPLSF---GGWVAVGADVTALRERE 132

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
            +L  ++K AE  +  KS FLA +SHEIRTPL  I+G ++++ +    P       +   
Sbjct: 133 RELKKSRKQAEAANEAKSAFLANISHEIRTPLNGILGMAQLMASGDLTPG----QKDQIE 188

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I  SG  ++ ++ND+LD+SKIE+G+ ++      L + +     L    A+EK +++  
Sbjct: 189 TILDSGKTLMALLNDVLDLSKIEAGRFDISPIDNDLGQLLRRMEKLWAPRASEKGLVLTL 248

Query: 689 SFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRD 743
              + +P +   D   V+Q   N++SNAI FT  G  + ++       E    V++ + D
Sbjct: 249 DINSAMPELLRFDPIRVRQCVSNLVSNAIKFTERGS-VRVAARCVPAGEGEFDVLVEISD 307

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TG+GM+   L K   PF Q   S   R  GTGLGL +++ +     G     S   +G+L
Sbjct: 308 TGIGMSGETLGKLFAPFTQADASTSRRFGGTGLGLSISRKLAQLMGGDVVAESEEGRGSL 367

Query: 804 IEIIF 808
             + F
Sbjct: 368 FTLTF 372


>gi|300867975|ref|ZP_07112614.1| periplasmic sensor signal transduction histidine kinase
           [Oscillatoria sp. PCC 6506]
 gi|300333996|emb|CBN57792.1| periplasmic sensor signal transduction histidine kinase
           [Oscillatoria sp. PCC 6506]
          Length = 574

 Score =  293 bits (751), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 87/302 (28%), Positives = 139/302 (46%), Gaps = 27/302 (8%)

Query: 532 STKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK--NKLSHAKKIAEKESSHKSDFL 589
              EE    L++ I              +    +  +   +L  AK  AE  +  KS FL
Sbjct: 271 QVSEESNFDLQVPIT-TSDEVGQLAIALNELILRVGEYTEELQEAKIAAEAANRSKSAFL 329

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
           A +SHE+RTPL AII +SE+++       G   ++     I  +G  +LD+++D+LDISK
Sbjct: 330 ANMSHELRTPLNAIINYSEMLQEDAQDE-GYEDFLPDLERIQTAGKHLLDMISDILDISK 388

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709
           IE+G + L+ E   +   + E ++  Q    +K   +      ++  + AD   V+QI L
Sbjct: 389 IEAGHVTLYLENFDIANMIEEVVTTAQPLVEKKGNTLAMQINGDVGTMYADQPKVRQILL 448

Query: 710 NILSNAIHFTPSGGQIIISTTHTSNEE----------------------VILRVRDTGVG 747
           N+LSNA  FT  G  I +S     N++                      +I RV DTG+G
Sbjct: 449 NLLSNAAKFTEKG-VITLSIERIKNDKFKSKNKKYKQEYPPALNSNSQVLIFRVSDTGIG 507

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           MT  +L+   KPF Q   S   +  GTGLGL +++ +     G+  + S   +G+   + 
Sbjct: 508 MTEEQLQHIFKPFTQADASTTRKYGGTGLGLTISQRLCQILGGEIAVESEVERGSTFTVR 567

Query: 808 FP 809
            P
Sbjct: 568 LP 569


>gi|265767426|ref|ZP_06095092.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
 gi|263252731|gb|EEZ24243.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
          Length = 556

 Score =  293 bits (751), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 99/394 (25%), Positives = 165/394 (41%), Gaps = 28/394 (7%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTN-------------RAVSKLFG----Y 487
           RK+E       +IL      + +I+ +  +L TN             + V  L       
Sbjct: 33  RKLENVNCLFDAILTHIHAYVLVIDSDFKVLKTNYYDLTHLSPDGKEKRVGDLLQCRNAL 92

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
             +                ++ N +  +    DL+ +L          +  + +  +   
Sbjct: 93  SAKGGCGTHAFCQECPVRGAIGNAFRQKKEFTDLQSSLNIAIDEHEFVKCDVMISGVFMT 152

Query: 548 LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
           L       LT+HDI+  KQ +  L+ AK+ AE     KS FLA +SHEIRTPL AI+GFS
Sbjct: 153 LDSEERMVLTVHDITSIKQTEEALAEAKEKAENADRSKSAFLANMSHEIRTPLNAIVGFS 212

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
           E++              +Y   +  +  L+L +VND+LD+SKIE+G +   +  V ++  
Sbjct: 213 ELLA----AANTEEEKQKYLEILHTNSELLLQLVNDILDLSKIEAGTLEFVYSDVDINLL 268

Query: 668 VSEAISLVQLYANEKR-ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726
           +++   L ++       + I T    +   +  D   + Q+  N +SNAI FT  G  I 
Sbjct: 269 LNDLEQLFRMKIGSNSPVQIITEPGLSSCMVHTDRNRIAQVVSNFVSNAIKFTTEGS-IR 327

Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
           I    + N  +   V DTG G++  +LE     F ++ + +     G GLGL + K +V+
Sbjct: 328 IGYQSSENG-LRFYVSDTGSGISADKLEGVFDRFVRLQSDKN----GNGLGLSICKTIVN 382

Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820
              G+    S   KG+      P +    P   I
Sbjct: 383 KLGGEIGAESEVGKGSTFWFTLPEHSDIKPKVII 416


>gi|118579340|ref|YP_900590.1| multi-sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
 gi|118502050|gb|ABK98532.1| Hpt sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
          Length = 977

 Score =  293 bits (751), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 87/272 (31%), Positives = 140/272 (51%), Gaps = 19/272 (6%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E ++    L  A+  A   +  KS+FLA +SHEIRTP+  ++G +E++     G L N +
Sbjct: 272 ELQRMVADLEVARDAANAANRAKSEFLANMSHEIRTPMNGVLGMTELLL----GTLLNGK 327

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             ++A  I  SG  +L I+ND+LD SKIE+GK+ L   P  + E + +A  L    A++K
Sbjct: 328 QRQFAETIRNSGEALLAIINDILDFSKIEAGKIELEKIPFDMHELLCDAAELFASSAHQK 387

Query: 683 RILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----V 737
            + +  S   ++P  ++ D   ++Q+ LN+ SNA+ FT  G +I+IS     + +    +
Sbjct: 388 GLELLVSIHPDVPRMVVGDPARLRQVVLNLASNAVKFTDQG-EIVISADVAESGQDNILI 446

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
              VRDTG+G++   LEK  + F Q   S   R  GTGLGL + + +     G   + ST
Sbjct: 447 RFLVRDTGIGISPESLEKIFEGFAQADGSMTRRYGGTGLGLTIVRQLAGLMGGTTRVEST 506

Query: 798 PAKGTLIEII----FP--LYDTSHP---HDCI 820
           P  G+          P  L   + P   H+ +
Sbjct: 507 PDVGSCFSFTARFDLPATLQQAALPSSAHEAL 538


>gi|126657352|ref|ZP_01728511.1| hybrid sensory kinase [Cyanothece sp. CCY0110]
 gi|126621339|gb|EAZ92051.1| hybrid sensory kinase [Cyanothece sp. CCY0110]
          Length = 764

 Score =  293 bits (751), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 78/259 (30%), Positives = 126/259 (48%), Gaps = 7/259 (2%)

Query: 563 EWKQEK--NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK--NQRFGPL 618
           E +  +   +L      ++  +  KS+FL  +SHE+RTPLT IIG S  +   +Q    L
Sbjct: 365 EQRVIERTQELRDTLVASQAANHSKSEFLGNMSHELRTPLTCIIGLSGTLLHWSQESSNL 424

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
              +  +Y   I  SG  +LD++N++L+ S ++SGK  L     SL +     I  V   
Sbjct: 425 PIDKQKKYLQTIQNSGKHLLDMINEILEYSNLQSGKYVLAVREFSLMKVAKNVIQRVSDE 484

Query: 679 ANEKRILIRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
           A  +RI +      N  +    AD   V+QI  ++L+NA+ FT   G + +      N +
Sbjct: 485 AEHRRINLELDLQINAQQDSFYADPERVQQILYHLLNNALKFTSENGTVTLRI-WRENNQ 543

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           V L V DTG+G+   ++    + F Q+ NS++    GTGLGL L K +V+ + G   + S
Sbjct: 544 VSLEVEDTGIGIKEEQIPLLFESFQQLENSRRRMYGGTGLGLALTKQLVELHGGTIEVES 603

Query: 797 TPAKGTLIEIIFPLYDTSH 815
              +G+   +  P    S 
Sbjct: 604 IINQGSTFIVRLPNQPQSQ 622


>gi|113474406|ref|YP_720467.1| periplasmic sensor signal transduction histidine kinase
           [Trichodesmium erythraeum IMS101]
 gi|110165454|gb|ABG49994.1| periplasmic sensor signal transduction histidine kinase
           [Trichodesmium erythraeum IMS101]
          Length = 569

 Score =  293 bits (751), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 82/267 (30%), Positives = 133/267 (49%), Gaps = 20/267 (7%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           IS+  +   +L  AK  AE  +  KS FLA +SHE+RTPL AIIG+S+++          
Sbjct: 300 ISKVAEYTEQLQEAKLKAEAANRSKSAFLATMSHELRTPLNAIIGYSDILYEDVLEGGYK 359

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
               +    I  +G  +L++++D+LDISKIE+G++ L+ E + +++ V +  S  +    
Sbjct: 360 DFIPD-IERIKLAGKNLLEMISDILDISKIEAGQVTLYLESIEVNKLVKDVFSTAKNITE 418

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH--------- 731
           + R         N+  + AD+  VKQ+ +N+LSNA  FT  G  I +S            
Sbjct: 419 KNRNKFELVLGENLGSMYADMPKVKQVLINLLSNAAKFTEDG-TITLSVEKVKNNQQKNN 477

Query: 732 ---------TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
                      N  ++ RV DTG+G+T  +L+   +PF Q   S   +  GTGLGL + K
Sbjct: 478 QNHNAKSLSNENYHIVFRVIDTGIGITEEQLKHIFQPFTQADTSTTRKYGGTGLGLAICK 537

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFP 809
            + +    +  + S   KG+   + FP
Sbjct: 538 RLCERMGAEITVKSQLGKGSTFTVWFP 564


>gi|307688976|ref|ZP_07631422.1| multi-sensor signal transduction histidine kinase [Clostridium
           cellulovorans 743B]
          Length = 673

 Score =  293 bits (751), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 77/381 (20%), Positives = 161/381 (42%), Gaps = 4/381 (1%)

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
              +E  + +    K K++         +    DG+ +I R   I   N     +     
Sbjct: 261 IIELEKTNNELIKAKDKVQSTEKLYNKFVNFIPDGVLVI-RNKKIEFANNTFLNMLQVDD 319

Query: 490 ED-ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
           +D ++       ++ +   ++   +  +    L    + I +   K+ K + +  +I   
Sbjct: 320 KDKLVNMSIFDVVDDSFHDILKSRINVLREKVLEVPQQYIFMWKDKK-KWVEVSSLIVND 378

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                   T+  I + K+ + +     ++  KE   K+DF   +SHE+RTP+  I    +
Sbjct: 379 EGGEYMISTLRSIEDKKKAE-EAEQLLELKGKEEKMKNDFFTNISHELRTPINVIYSALQ 437

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
           V  +           I+Y   I ++   ++ ++N+L+DI++IE+     +F+  ++   V
Sbjct: 438 VENDYLKNDTKAEVIIKYNRIIRQNCLRLMRLINNLIDITRIETSFFEPNFQSGNIITIV 497

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
            +    +  Y   K I +          +  D   +++I LN+LSNA+ +   GG I + 
Sbjct: 498 EDITMSIVQYIESKNISLIFDTEIEESYVKFDPDLIERIVLNLLSNAVKYGREGGNIEVY 557

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
               S + + + ++D G+G+ + + E+    F ++  S   + EG+G+GL L K +V+ +
Sbjct: 558 MYENSAKSIAISIKDDGIGIPDEKKERIFDRFLKVDASLSRKTEGSGIGLALVKQLVEIH 617

Query: 789 MGKFYIFSTPAKGTLIEIIFP 809
            G     S   +GT   I  P
Sbjct: 618 QGTIVFNSKLNQGTEFIITLP 638


>gi|254423945|ref|ZP_05037663.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Synechococcus sp. PCC 7335]
 gi|196191434|gb|EDX86398.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Synechococcus sp. PCC 7335]
          Length = 935

 Score =  293 bits (751), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 79/250 (31%), Positives = 128/250 (51%), Gaps = 6/250 (2%)

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
             L  A   A      K +FL+ +SHE+RTPLT IIG S  +    FG L   R   Y  
Sbjct: 556 QSLRDALSAATAADRTKVEFLSTMSHELRTPLTYIIGMSATLLRWSFGELS-ERQRSYLE 614

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I+RSG  +L ++ND+L+ +K+ESG+  L+     L   V    +  Q  A    + +  
Sbjct: 615 TINRSGEHLLTVINDILEFAKVESGRSLLNVSNFPLSNLVRSVATRYQEDAKNHDVSLSV 674

Query: 689 S--FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
               +  +    AD + ++QI  N+++NAI FTP+GG+I +      +  ++L+V DTG+
Sbjct: 675 DCVLSPEVENFRADSKRIEQILSNLVNNAIKFTPAGGEITLRVQKELD-SILLQVEDTGI 733

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+   + +   + F Q+ +  Q +  GTGLGL + K +V+ + G   + ST  KG+   +
Sbjct: 734 GIPESQQKFMFEKFKQLESPFQRQYAGTGLGLAMTKHLVELHNGTIQVISTVGKGSTFIV 793

Query: 807 IFPLYDTSHP 816
             P+   S P
Sbjct: 794 SLPI--QSQP 801


>gi|225570976|ref|ZP_03779999.1| hypothetical protein CLOHYLEM_07080 [Clostridium hylemonae DSM
           15053]
 gi|225160438|gb|EEG73057.1| hypothetical protein CLOHYLEM_07080 [Clostridium hylemonae DSM
           15053]
          Length = 959

 Score =  293 bits (751), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 102/537 (18%), Positives = 196/537 (36%), Gaps = 54/537 (10%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFF---VYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365
              ++     +N   +  +  P             + +AN     +  Y   +       
Sbjct: 158 AEANSEIRRQDNFLTQLYNTVPCGIIQFTTDRSHRIIHANKRAWEIYGYTRSEYWSSVK- 216

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
               +   +         V   ++D   +         +    +   ++       N   
Sbjct: 217 -DPFIFVLEEERELYRTKVESLKNDGDIVYYD---REGRRKDGSQCFVSVAMARLLNADG 272

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA--TSDGIAIINREGI--ILSTN--- 478
           E +    +  +  + +  + ++E E  QL   LE       +      G   IL+ N   
Sbjct: 273 EEV-IQAVFNDITEAK--RLELEKEREQL---LENQLLRAAVLT----GYPLILNVNLTK 322

Query: 479 RAVSKLF--GYPVEDILRKPFTVF-------LEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
            +  K+    +  ++     F          +  +   V          +   Q   +  
Sbjct: 323 NSFDKIISDNFICKNTSGSNFDHLVKEAYTTIYPSYREVFRELFDRDHIMSEFQNGNREI 382

Query: 530 LGSTK----EEKLLSLRIIIKKLPFSSCY----SLTMHDISEWK----QEKNKLSHAKKI 577
               +    +     L + I  +           +    + E      +++  L  A + 
Sbjct: 383 FTEFRQLGDDGDYHWLSVHIIAVDNPYGQDTLSVMLFRVLDEQHAAQARQEQLLRDALEE 442

Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
           A+  S+ KSDFL+R+SH+IRTP+ AI+G S +    +       + +     ID S   +
Sbjct: 443 AKAASNAKSDFLSRMSHDIRTPINAIVGMSTI---GQLKIDDRNQSVNCFKKIDDSSRYL 499

Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697
           L ++ND+LD+SKIE+GKM L  E   L E ++   ++V   +  K I       +++ + 
Sbjct: 500 LSLINDILDMSKIENGKMALTDEQFDLHELINSITAIVYSQSVFKNIQFEVYCEDSLQQY 559

Query: 698 L-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDTGVGMTNYE 752
              D   + QI +N+LSN++ FTP+GG I +    +        +  +V D+G GM+   
Sbjct: 560 YLGDALRMNQILMNLLSNSLKFTPAGGMITLHVKESKRRCGYSYLAFQVTDSGKGMSEDF 619

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +++  +PF Q          GTGLGL +   +V    G   + S   +GT+  I  P
Sbjct: 620 MKRLYQPFEQEAADTARNLTGTGLGLSIVYNLVQLMNGTINVESRLGEGTVFSIEIP 676


>gi|16763778|ref|NP_459393.1| phosphate regulon sensor protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|62179009|ref|YP_215426.1| phosphate regulon sensor protein [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|167551796|ref|ZP_02345549.1| phosphate regulon sensor protein PhoR [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|167992243|ref|ZP_02573341.1| phosphate regulon sensor protein PhoR [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168232367|ref|ZP_02657425.1| phosphate regulon sensor protein PhoR [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168240216|ref|ZP_02665148.1| phosphate regulon sensor protein PhoR [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168465483|ref|ZP_02699365.1| phosphate regulon sensor protein PhoR [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|194442327|ref|YP_002039638.1| phosphate regulon sensor protein [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194448403|ref|YP_002044431.1| phosphate regulon sensor protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194470414|ref|ZP_03076398.1| phosphate regulon sensor protein PhoR [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|197264823|ref|ZP_03164897.1| phosphate regulon sensor protein PhoR [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|224582235|ref|YP_002636033.1| phosphate regulon sensor protein [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|238911468|ref|ZP_04655305.1| phosphate regulon sensor protein [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|16418902|gb|AAL19352.1| sensory kinase in two-component regulatory system with PhoB,
           regulates pho regulon [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|62126642|gb|AAX64345.1| sensory kinase in two-component regulatory system with PhoB,
           regulates pho regulon [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|194400990|gb|ACF61212.1| phosphate regulon sensor protein PhoR [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194406707|gb|ACF66926.1| phosphate regulon sensor protein PhoR [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194456778|gb|EDX45617.1| phosphate regulon sensor protein PhoR [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|195631736|gb|EDX50256.1| phosphate regulon sensor protein PhoR [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197243078|gb|EDY25698.1| phosphate regulon sensor protein PhoR [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|205323434|gb|EDZ11273.1| phosphate regulon sensor protein PhoR [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205329541|gb|EDZ16305.1| phosphate regulon sensor protein PhoR [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205333420|gb|EDZ20184.1| phosphate regulon sensor protein PhoR [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205340126|gb|EDZ26890.1| phosphate regulon sensor protein PhoR [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|224466762|gb|ACN44592.1| phosphate regulon sensor protein PhoR [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|261245681|emb|CBG23477.1| phosphate regulon sensor protein PhoR [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267992106|gb|ACY86991.1| phosphate regulon sensor protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301157010|emb|CBW16493.1| phosphate regulon sensor protein PhoR [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312911431|dbj|BAJ35405.1| phosphate regulon sensor protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321225122|gb|EFX50183.1| Phosphate regulon sensor protein PhoR SphS [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|322713468|gb|EFZ05039.1| phosphate regulon sensor protein [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
 gi|323128715|gb|ADX16145.1| phosphate regulon sensor protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332987346|gb|AEF06329.1| phosphate regulon sensor protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 431

 Score =  293 bits (751), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 72/427 (16%), Positives = 156/427 (36%), Gaps = 37/427 (8%)

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             +L       +     L  + W     L +         +        G+    +  + 
Sbjct: 33  WFLLAAVTGLLVWHFWNLLRLSW----WLWVDRSMTPPPGRGSWEPLLYGLHQMQLRNKK 88

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            +R++   + +  S  E+  D + +   EG I   N    ++ G    D   +     L 
Sbjct: 89  RRRELGNLIKRFRSGAESLPDAVVLTTEEGGIFWCNGLAQQILGLRWPDDNGQNILNLLR 148

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
               +               +   +         + L +R++           +   D++
Sbjct: 149 YPEFTQYL----------KTRDFTRPLHLVLNTGRHLEIRVMPY---TDKQLLMVARDVT 195

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  Q +                + +F A VSHE+RTPLT + G+ E+++ Q        +
Sbjct: 196 QMHQLEG--------------ARRNFFANVSHELRTPLTVLQGYLEMMQEQALEGATREK 241

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                + +      +  +V  LL +SKIE+    L  E V +   +       Q  + +K
Sbjct: 242 A---LHTMREQTYRMEGLVKQLLTLSKIEAAPALLLNEKVDVPMMLRVVEREAQTLSQQK 298

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
                    +++  +L +   ++    N++ NA++ TP+G  I +S    ++      ++
Sbjct: 299 H-TFTFEVDDSL-SVLGNEEQLRSAISNLVYNAVNHTPAGTHITVSWRRVAHG-AEFCIQ 355

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G G+    + +  + F ++  ++  +  G+GLGL + K  ++ +  +  I S+P KGT
Sbjct: 356 DNGPGIAAEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHALNHHESRLEIDSSPGKGT 415

Query: 803 LIEIIFP 809
               + P
Sbjct: 416 RFSFVLP 422


>gi|116624045|ref|YP_826201.1| multi-sensor hybrid histidine kinase [Candidatus Solibacter usitatus
            Ellin6076]
 gi|116227207|gb|ABJ85916.1| multi-sensor hybrid histidine kinase [Candidatus Solibacter usitatus
            Ellin6076]
          Length = 1210

 Score =  293 bits (751), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 100/808 (12%), Positives = 212/808 (26%), Gaps = 108/808 (13%)

Query: 89   IDAHGYLKEISEELPKTIGNYA-FKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
            +DA G L E++      +   +  +     L D     +      +   +    +   + 
Sbjct: 291  MDAEGRLLEMNPAGLAMLDVESLAEAQEKPLVDYVSPEYRAVFQRLQKKVLSGGSGTLEF 350

Query: 148  TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
             L    GT  +  ++  A P+              +              +    +    
Sbjct: 351  ELVGRRGT--HRWLETHAAPLRDAAGHVEALLSVTV--DMTRHKAAEEELREKHGQLQSA 406

Query: 208  HEIKKGHSSVEKEKYDIF------SQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
             E+ +        + D           S  P     +  ++        D      K   
Sbjct: 407  LELARAGVWHWNSRTDRVRTIQGSGPVSGLPKSSYPSNRAAFLLLVHPDDRADIAGKLER 466

Query: 262  LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
              S       +      + +          ++++S  +          +     +     
Sbjct: 467  ARSTGE-FAAEFRIVLPDGSTRWVAARGRAVRDSSGAAVGLAGVDRDITEQRRAERRIRQ 525

Query: 322  TPETVDKCPI---------------------------------PFFVYSHGNLFYANPSF 348
                                                              G +  A  + 
Sbjct: 526  LNRVYSVLSDINETIVRESNRQRMLSEACRIAVESGEFRLAWIGLRSEPGGRIEVAAHAG 585

Query: 349  L-----LLTKYKSVDDIEIAGGLSTLLDA-----------PKLSDNNAIKPVMLYRSDRT 392
                   L    S ++        T                +       + + L R  R 
Sbjct: 586  ATEDTVELLHLMSEEEPGHDECAFTAYAMETGRHGVCNDLARDERAAPWREMALQRGYRG 645

Query: 393  CIAASARLHTIQ------WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
              +   +           +  E                 +      I   +      ++ 
Sbjct: 646  MASLPLKSGGAVIGIFNLYAGEPDFFDADELRLLDELALDISFALEIYDRETKRGWAEQV 705

Query: 447  MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL--RKPFTVFLEQN 504
            +     +   + E   +   +   +  IL  + A  +++G P   +    + +   +  +
Sbjct: 706  LRESEERFRQLAENIQEVFWMT-ADQKILYVSPAYERIWGRPRSALYEDPRSWIEAVHPD 764

Query: 505  TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHD 560
                +      I         ++       +  +  +      +            T  D
Sbjct: 765  DRGQILQAAKVIQKGGN---YDETYRIQRPDGTVRWIHDHAFPVRDERGEIVRIVGTAED 821

Query: 561  ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
            I+E +Q + +   A+K+              V+H+    LT I G+  ++   +    G 
Sbjct: 822  ITERRQLEEQYRQAQKM-----EAIGQLAGGVAHDFNNLLTVIHGYGSLLLAGKESTSGT 876

Query: 621  PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
                  A  I  +     ++   LL   +    +  +    + L E VS   S++Q    
Sbjct: 877  SLA---AQEIVLAAERAANLTRQLLAFGR----RQVMQPRSLDLTEVVSSLTSMLQ-RVL 928

Query: 681  EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT---------- 730
               I ++     +     AD   + Q+ +N++ NA    P GGQ+ I TT          
Sbjct: 929  GANIRLQLIPHGSPLITRADSGMLDQVLMNLVVNACDAMPDGGQLTIETTERTFTQREAR 988

Query: 731  ----HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
                  +   V LRV DTG G++   L    +PF          G+GTGLGL     +V 
Sbjct: 989  RIPDARAGRYVSLRVTDTGSGISPESLPHIFEPFFTTKQP----GKGTGLGLSTVFGIVK 1044

Query: 787  ANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
             + G   + S   +GT  +I  P  + +
Sbjct: 1045 QHGGWVQVKSEVGRGTSFQIFLPAAEET 1072



 Score =  118 bits (295), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 42/310 (13%), Positives = 90/310 (29%), Gaps = 16/310 (5%)

Query: 280 LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-- 337
           + +  ++            S +  +            EGE      +  CPI   V+   
Sbjct: 111 MGRDPRQLSLAQQHGLRALSRQVTALMELRRHRLELTEGEAQLFRVLRGCPIALTVHRMS 170

Query: 338 HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397
            G    AN  F  LT +   + I           AP+L   +      L      C    
Sbjct: 171 DGAFVDANDIFTSLTGWSCKEVIGHK--------APELQLVDGATAARLRSQLEACGELH 222

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
               T++        +         +    +       +  + +  + ++     +L +I
Sbjct: 223 NAETTVRTRSGELRKVLLSTALVELRSG--LHAITTFVDITERKRAEDELREHKRRLAAI 280

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           +E   + + +++ EG +L  N A   +     + +   KP   ++     +V      ++
Sbjct: 281 IEHEPECVTVMDAEGRLLEMNPAGLAMLDVESLAEAQEKPLVDYVSPEYRAVFQRLQKKV 340

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL--PFSSCYSLTMHDISEWKQEKNKLSHA 574
           LS     TLE   +G     + L       +              D++  K  + +L   
Sbjct: 341 LSGG-SGTLEFELVGRRGTHRWLETHAAPLRDAAGHVEALLSVTVDMTRHKAAEEELREK 399

Query: 575 KKIAEKESSH 584
               +     
Sbjct: 400 HGQLQSALEL 409



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 46/505 (9%), Positives = 131/505 (25%), Gaps = 37/505 (7%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151
            G   + ++      G    ++IG +  ++  +           L         +TT+  
Sbjct: 171 DGAFVDANDIFTSLTGWSCKEVIGHKAPELQLVDGATAARLRSQLEACGELHNAETTVRT 230

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
             G    V +  A + +       SG                    +   ++ + + E +
Sbjct: 231 RSGELRKVLLSTALVELR------SGLHAITTFVDITERKRAEDELREHKRRLAAIIEHE 284

Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE----YYAHKDDVLKTEKYPLLTSEES 267
               +V   +  +         +     ++   E     Y   +     ++         
Sbjct: 285 PECVTVMDAEGRLLEMNPAGLAMLDVESLAEAQEKPLVDYVSPEYRAVFQRLQKKVLSGG 344

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
           S   + +           + +   L++ +      LS     +     +E          
Sbjct: 345 SGTLEFELVGRRGTHRWLETHAAPLRDAAGHVEALLSVTVDMTRHKAAEEELREKHG--- 401

Query: 328 KCPIPFFVYSHGNLFYANPSFLL---LTKYKSVDDIE----IAGGLSTLLDAPKLSDNNA 380
           +      +   G +++ N        +     V  +      +   + LL        + 
Sbjct: 402 QLQSALELARAG-VWHWNSRTDRVRTIQGSGPVSGLPKSSYPSNRAAFLLLVHPDDRADI 460

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
              +   RS        A    I     ++  +        +     +   G++ +  + 
Sbjct: 461 AGKLERARSTGEF----AAEFRIVLPDGSTRWVAARGRAVRDSSGAAVGLAGVDRDITEQ 516

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           R  +R++  ++ ++ S+L   ++ I        +  +NR   ++       I  +     
Sbjct: 517 RRAERRIR-QLNRVYSVLSDINETI--------VRESNR--QRMLS-EACRIAVESGEFR 564

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
           L             E+ +           L    EE+              +      +D
Sbjct: 565 LAWIGLRSEPGGRIEVAAHAGATEDTVELLHLMSEEEPGHDECAFTAYAMETGRHGVCND 624

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHK 585
           ++  ++       A +   +  +  
Sbjct: 625 LARDERAAPWREMALQRGYRGMASL 649



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 48/355 (13%), Positives = 112/355 (31%), Gaps = 23/355 (6%)

Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
           N SF   T  +    I    G         L   +    V  Y          A +  + 
Sbjct: 52  NVSFGAHTILQPDLLIVPDAGEDARFAKNPLVTGDPH--VRFYAGVPVLNEGGAAVGALS 109

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
               +   ++             +         ++ R ++ ++     QL  +L      
Sbjct: 110 IMGRDPRQLSLAQQHGLRALSRQV------TALMELRRHRLELTEGEAQLFRVLRGCPIA 163

Query: 465 IAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
           + +    +G  +  N   + L G+  ++++       L+    +      +++ +     
Sbjct: 164 LTVHRMSDGAFVDANDIFTSLTGWSCKEVIGHK-APELQLVDGATAARLRSQLEACGELH 222

Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
             E      + E + + L   + +L        T  DI+E K+ +++L   K+       
Sbjct: 223 NAETTVRTRSGELRKVLLSTALVELRSGLHAITTFVDITERKRAEDELREHKRRLAAIIE 282

Query: 584 HKSDFLARVSHEIR----TPLTAIIGFSEVIKNQRFGPLGN---PRYIEYANYIDR---- 632
           H+ + +  +  E R     P    +   E +   +  PL +   P Y      + +    
Sbjct: 283 HEPECVTVMDAEGRLLEMNPAGLAMLDVESLAEAQEKPLVDYVSPEYRAVFQRLQKKVLS 342

Query: 633 --SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
             SG L  ++V        +E+    L      ++  +S  + + +  A E+ + 
Sbjct: 343 GGSGTLEFELVGRRGTHRWLETHAAPLRDAAGHVEALLSVTVDMTRHKAAEEELR 397



 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/268 (9%), Positives = 57/268 (21%), Gaps = 11/268 (4%)

Query: 71  ENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM--IGMRLCDVSDILHID 128
           E+   F  +   ++  + + A   +  +S    +  G     +        +        
Sbjct: 708 ESEERFRQLAENIQEVFWMTADQKILYVSPAYERIWGRPRSALYEDPRSWIEAVHPDDRG 767

Query: 129 PNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNR 188
                  ++++   +     +   +GT     I   A P+     E    R  G      
Sbjct: 768 QILQAAKVIQKGGNYDETYRIQRPDGT--VRWIHDHAFPVRDERGEIV--RIVGTAEDIT 823

Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHS--SVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY 246
                    +   +K   + ++  G +                        +  S   + 
Sbjct: 824 ERRQLEEQYR-QAQKMEAIGQLAGGVAHDFNNLLTVIHGYGSLLLAGKESTSGTSLAAQE 882

Query: 247 YAHKDDVLKTEKYPLLTSEESS--LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
                +        LL         P   D   +  +  +  Q         +       
Sbjct: 883 IVLAAERAANLTRQLLAFGRRQVMQPRSLDLTEVVSSLTSMLQRVLGANIRLQLIPHGSP 942

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIP 332
                          NL     D  P  
Sbjct: 943 LITRADSGMLDQVLMNLVVNACDAMPDG 970


>gi|6448582|emb|CAB61240.1| virulence protein S [Klebsiella pneumoniae]
          Length = 1218

 Score =  293 bits (751), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 103/418 (24%), Positives = 180/418 (43%), Gaps = 16/418 (3%)

Query: 399 RLHTIQWN--RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
            +    W+        +T                          + ++  +E ++    +
Sbjct: 523 EVKIDTWDLYSRPFYILTVSAVLLILSSLLWGGYL--LRAIRREKASQAALEYQLSLRQT 580

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--NTPSVMNHYLT 514
           +  +    + I   EG I S NRA +  F     + +            +   V+   + 
Sbjct: 581 LSNSIPVPVYITTPEGEIESYNRAFNAFFTPQQREAIHYSLFDRRSPLVHIFPVIQQEMQ 640

Query: 515 EILSLDLRQTLEKITLGSTKEEKLL-SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH 573
           + L+ +   + +       ++  +L  + +    +P          DI+E ++    L  
Sbjct: 641 QGLAPETVASHQFTLNNGAEDRTILHWMTLCPLPVPLPPVLICGWQDITESRKLMEALQV 700

Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
            K  A + S  KS FLAR+SHEIRTP++AI+GF E++     GP       E       +
Sbjct: 701 EKDKAIEASRAKSRFLARMSHEIRTPVSAIMGFLELLAT---GPQSEREAQESLQLAYAT 757

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693
              ++ ++ D+LD+ KIESG   L  E V ++      ++     A +K + +  S+  N
Sbjct: 758 AQSLIGLIGDVLDMEKIESGNFELTPEWVDIEALTQATMANFAGLARQKNLQLTVSYQLN 817

Query: 694 IPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNE--EVILRVRDTGVGMT 749
              IL  D +++KQ+  N LSNAI FT SGG +I + T    N+  +++L V+D+GVG++
Sbjct: 818 AGGILFLDPQAIKQVLANFLSNAIKFTVSGGVEIKVETQPRENDAAQLMLSVKDSGVGIS 877

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
             E +   KPF Q   S   +  G+GLGL + K ++D   G   + S P  GT + I 
Sbjct: 878 EEEQQLLFKPFSQA--SCGKKQMGSGLGLTICKELMDRMHGTISVASHPGTGTTMSIY 933


>gi|298292228|ref|YP_003694167.1| multi-sensor hybrid histidine kinase [Starkeya novella DSM 506]
 gi|296928739|gb|ADH89548.1| multi-sensor hybrid histidine kinase [Starkeya novella DSM 506]
          Length = 839

 Score =  293 bits (751), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 98/654 (14%), Positives = 206/654 (31%), Gaps = 51/654 (7%)

Query: 176 SGFRGFGIVHVNRVDNDPRA--LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH 233
           +G   FG+  +        A      L    +    +       E    D+ ++  P   
Sbjct: 69  TGLLRFGMPDMRDELARRVADSAPDGLCVVDTLGRVLYANPRYCEITGADVPAEARPVER 128

Query: 234 LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293
           L   +  +S   Y   +           +       P       +   +   +      +
Sbjct: 129 LFTSDPDASEAVYRLAQGVREGKALTEEVRIAGPGQP-------VRWLKLGARPAAPGAK 181

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTK 353
                 +                       + +D  P  FF  + G + Y N + +    
Sbjct: 182 GAKSAVWTVSDLTRERERQETAFLELQHAIDYLDHAPAGFFSAAGGAIHYINATLVDWLG 241

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
           Y   +      G   L  A  +    A     +             L   + N +  L +
Sbjct: 242 YDLAE-----FGPGGLTVADIVPGPAAALLTGMAPLPGGVRTEVLDLDLKRKNGQT-LPV 295

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
                              +                  ++       +   IA ++ EG 
Sbjct: 296 RLWHRVAFAADGTPGASRTLVVNRSREDNAADPARAAEVRFARFFHNSPIAIAAVDGEGR 355

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
           I+  N   ++LFG    +  R+     + +     +   +   +      +   I L   
Sbjct: 356 IVRANAMFARLFGTREGE--RRRLVDMVAEAARGPLETAVAAAVKGQAPSSPIDIGLDRE 413

Query: 534 KEEKLLSLRIIIKKLPFSSCYSLTM--HDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
              +     +   +   +   +  +   D +E +  + + + ++K+              
Sbjct: 414 G-GRSARFYLAPVEDGGAEREAAIVYAIDTTEQRTLEAQFAQSQKM-----QAVGQLAGG 467

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           V+H+    LTAIIG+S+++         +P + +    I ++ N    +V  LL  S+  
Sbjct: 468 VAHDFNNVLTAIIGYSDLLL--ANSRPTDPSFQDVMQ-IKQNANRAAGLVRQLLAFSR-- 522

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
             +  L  + ++L + +S+ +S++      + I +      ++  + ADL   +Q+ +N+
Sbjct: 523 --RQTLRPQVLNLGDVMSD-LSMLLRRLLGETIKLEVKEERDLWPVKADLNQFEQVIVNL 579

Query: 712 LSNAIHFTPSGGQIIISTT--------------HTSNEEVILRVRDTGVGMTNYELEKAM 757
             NA    P GG + I T                 + + V++ V DTG G+    ++K  
Sbjct: 580 AVNARDAMPEGGTLAIRTANVSAAQAAQYAEAGLPAADHVLVEVTDTGAGIPPAIIDKIF 639

Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
           +PF          G+GTGLGL     +V    G   + S P KG++  +  P +
Sbjct: 640 EPFFTTK----EVGKGTGLGLSTVYGIVKQTGGTLQVESEPGKGSIFRVFLPRH 689



 Score = 75.8 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 38/383 (9%), Positives = 90/383 (23%), Gaps = 33/383 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D  G +   +    +  G         R  +       D +  +  L +        T 
Sbjct: 98  VDTLGRVLYANPRYCEITGADVPA--EARPVERLFTSDPDASEAVYRLAQGVREGKALTE 155

Query: 149 LWPIEGTNLYV-PIDLAALPIYSRNREFSGFRG-----FGIVHVNRVDNDPRALGKRLDK 202
              I G    V  + L A P         G +G     + +  + R           L  
Sbjct: 156 EVRIAGPGQPVRWLKLGARP------AAPGAKGAKSAVWTVSDLTRERERQETAFLELQH 209

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQ----QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
              +L     G  S         +                   ++ +        L T  
Sbjct: 210 AIDYLDHAPAGFFSAAGGAIHYINATLVDWLGYDLAEFGPGGLTVADIVPGPAAALLTGM 269

Query: 259 YPLLTSEESSLPEQEDFHTINLN---QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
            PL     + + + +           +   +  F             ++     + +   
Sbjct: 270 APLPGGVRTEVLDLDLKRKNGQTLPVRLWHRVAFAADGTPGASRTLVVNRSREDNAADPA 329

Query: 316 DEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
              E          PI        G +  AN  F  L   +  +          L+D   
Sbjct: 330 RAAEVRFARFFHNSPIAIAAVDGEGRIVRANAMFARLFGTREGE-------RRRLVDMVA 382

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
            +    ++  +         ++   +   +    ++    F      +   E        
Sbjct: 383 EAARGPLETAVAAAVKGQAPSSPIDIGLDREGGRSAR---FYLAPVEDGGAEREAAIVYA 439

Query: 435 PEDVDTRINKRKMEIEVMQLCSI 457
            +  + R  + +   +  ++ ++
Sbjct: 440 IDTTEQRTLEAQF-AQSQKMQAV 461


>gi|260777959|ref|ZP_05886852.1| signal transduction histidine kinase [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260605972|gb|EEX32257.1| signal transduction histidine kinase [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 619

 Score =  293 bits (751), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 72/256 (28%), Positives = 127/256 (49%), Gaps = 9/256 (3%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           + +    ++  +KK AE  +  KS+FLA +SHEIRTP+  I+G +E++K  +     N  
Sbjct: 191 QLRVNYQQIIESKKKAEIANVKKSEFLANMSHEIRTPMNGIVGVAELLKETK----PNEV 246

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
              Y + +  S + +LDI+ND+LD SKIE+G   L      L   + +  +   + A ++
Sbjct: 247 QRNYVDILLTSSHTLLDIINDILDFSKIEAGHFELDPTKFDLKSLIQQQANEYSIRAKQQ 306

Query: 683 RILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH---TSNEEVI 738
            +    +    +P  I AD   +KQ+  N++ NA+ FT  G  + ++       +  ++ 
Sbjct: 307 ELFFDCNIDPAVPQEIEADSVRLKQVINNLIGNALKFTHRG-YVELNIKLLENETGNQLQ 365

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
             V+DTG+G+   +L+     F Q   S   +  GTGLGL +++ +V+   GK  + S  
Sbjct: 366 FEVKDTGIGIAKDKLDSIFDKFQQADGSTARQYGGTGLGLAISQKIVELMGGKLQVTSEV 425

Query: 799 AKGTLIEIIFPLYDTS 814
             G+      P+   S
Sbjct: 426 DLGSSFYFSIPIDTPS 441


>gi|254476057|ref|ZP_05089443.1| multi-sensor hybrid histidine kinase [Ruegeria sp. R11]
 gi|214030300|gb|EEB71135.1| multi-sensor hybrid histidine kinase [Ruegeria sp. R11]
          Length = 883

 Score =  293 bits (751), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 104/585 (17%), Positives = 203/585 (34%), Gaps = 31/585 (5%)

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
           ++ +    A +   L  E    L    ++  +   +          K     L   + E 
Sbjct: 17  IAVVVALLAVQSVRLGREVLFRLDGLSTAATDSLQWTLSQAEIEHLKLENAVLAAETVED 76

Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPI--PFFVYSHGNLFYANPSFLLLTKYKSV 357
              +  +     S      E+ T   V   P            + Y     L+       
Sbjct: 77  LAQVRRKFDILFSRIMTIRESRTFAPVRNAPDNAGIMPRVQQRIDY-----LITYIDGPD 131

Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
           + +        L   P++S+        L       +   AR    +      L      
Sbjct: 132 EAL--------LFGLPRVSEILEENRTDLRNLALAGLTEHARASEEKRLNFFDLLSRLAI 183

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
              A      M    +       +    +    V ++ +++ ++ D I +++ +G I   
Sbjct: 184 VVLALLVALTMTTLMMGRLYQRGKRLAERTREAVARMRAMVTSSLDAILVVDSDGKIQEF 243

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNT-PSVMNHYLTEILSLDLRQTL---EKITLGST 533
           N A   +FGY   +         +  +         +    +      +           
Sbjct: 244 NGAAEAIFGYSRAEATGANMADLIVPDHLREAHAEGMERFRTSGQETVIGKGRIQLEAKR 303

Query: 534 KEEKLLSLRIIIKK-------LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
           K  ++  + + I             + +   + DIS+    + +L +A+  A      K+
Sbjct: 304 KSGEVFPVELSITASKPAEDGEEGETVFVSYLRDISDRIAAERELRNARDKALAGERAKA 363

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
           + L  +SHE+RTPLT ++G  +++ +             Y   I +SG+ ++  VND+L 
Sbjct: 364 ELLTVMSHEMRTPLTGVLGAVDLLSDSGLSA----EQSGYVTMIRQSGDRLMGHVNDVLQ 419

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVK 705
           +S +ES   N +     L + V E +   Q  A +    +  S        +L    +V+
Sbjct: 420 LSNLESSVDNENRRIFDLAKLVGELVKSQQTAARQAGNELSWSCNLGPTNNVLGRPLAVQ 479

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           ++   IL NA+ FT  G   +      S++ V + + DTG G+   +L++  + F ++  
Sbjct: 480 RVLQKILQNAVDFTRDGAVAVEVQRLGSSDRVEISIADTGKGIAEDDLDRIFEDFIRLDA 539

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           S     EGTGLGL + +  V+A  G     S   +G+L  I  PL
Sbjct: 540 SYSRSSEGTGLGLAITRRTVEAMGGDISCESELGEGSLFTISLPL 584



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 46/382 (12%), Positives = 99/382 (25%), Gaps = 27/382 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D+ G ++E +       G    +  G  + D+    H+   +   + ++R  T   +T 
Sbjct: 234 VDSDGKIQEFNGAAEAIFGYSRAEATGANMADLIVPDHLREAH--AEGMERFRTSGQETV 291

Query: 149 -------LWPIEGTNLYVPIDLAALPIY-SRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
                  L     +    P++L+      + + E         +             +  
Sbjct: 292 IGKGRIQLEAKRKSGEVFPVELSITASKPAEDGEEGETVFVSYLRDISDRIAAERELRNA 351

Query: 201 DKKFSHLHEIKKGHSSVEKEKYD-----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255
             K       K    +V   +       +           +  + S          D L 
Sbjct: 352 RDKALAGERAKAELLTVMSHEMRTPLTGVLGAVDLLSDSGLSAEQSGYVTMIRQSGDRLM 411

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
                +L           +   I        +   + Q  ++++   LS   +   +   
Sbjct: 412 GHVNDVLQLSNLESSVDNENRRIFDLAKLVGELVKSQQTAARQAGNELSWSCNLGPTNNV 471

Query: 316 DEGENLTPETVDKC-----------PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364
                     + K             +   V   G+      S     K  + DD++   
Sbjct: 472 LGRPLAVQRVLQKILQNAVDFTRDGAVAVEVQRLGSSDRVEISIADTGKGIAEDDLDRIF 531

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
               +      S ++    + L  + RT  A    +       E SL    +P   + Q 
Sbjct: 532 E-DFIRLDASYSRSSEGTGLGLAITRRTVEAMGGDISCESELGEGSLFTISLPLPASGQS 590

Query: 425 PENMPQNGIEPEDVDTRINKRK 446
             N   +       DT    +K
Sbjct: 591 VSNTTASAAPAVAADTHDAVQK 612


>gi|74484333|gb|ABA10818.1| bZIP histidine kinase [Pseudomonas putida]
          Length = 978

 Score =  293 bits (751), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 89/374 (23%), Positives = 160/374 (42%), Gaps = 17/374 (4%)

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT---VFLEQNTPS 507
                 I +   + + +++  G +L  N+   +  G  +E+I  KPF     +       
Sbjct: 33  EEHARIIFDGLYEFVGLLDAHGNVLEVNQVALEGGGITLEEIRGKPFWKARWWQISKKTE 92

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM----HDISE 563
                L E  S       +   LG +   +++++   +  +       + +     +I++
Sbjct: 93  ATQKRLVETASSGEFVRCDVEILGKSGGREVIAVDFSLLPICNEEGSIVYLLAEGRNITD 152

Query: 564 WKQEKNKLSHAKKIAEKE-------SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            K+ +  L+   +  E+         + KSDF A+VSHE+RTPL+ I+G  E +     G
Sbjct: 153 RKKAEAMLALKNQELEQSVECIRKLDNAKSDFFAKVSHELRTPLSLILGPLEAVMAAEAG 212

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
                 Y +    I R+   +L  VN LLD++K+++ +M L +   +L +      S  +
Sbjct: 213 RESP--YWKQFEVIQRNAMTLLKQVNTLLDLAKMDARQMGLSYRRANLSQLTRTISSNFE 270

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
             A +K I   T     +     D    ++I LN+LSNA  FTP GG I    + +    
Sbjct: 271 GIAQQKSITFDTKLPVQMVA-EVDCEKYERIILNLLSNAFKFTPDGGLIRCCLSLSRPNY 329

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
            ++ V D+G G+     ++  + F Q+    Q    GTGLGL + K  V+ + G   +  
Sbjct: 330 ALVTVSDSGPGIPPALRKEIFERFHQLSQEGQQATRGTGLGLSIVKEFVELHRGTISVSD 389

Query: 797 TPAKGTLIEIIFPL 810
            P  G L ++  PL
Sbjct: 390 APGGGALFQVKLPL 403



 Score =  257 bits (657), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 74/438 (16%), Positives = 162/438 (36%), Gaps = 32/438 (7%)

Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR---KMEIEV 451
             SA     + +   S+ +      K      +                ++    +    
Sbjct: 553 PFSAHELRARVSNLVSMKVAGDALRKELSDQGDDIAILTHRLIKSRHRLQQSNIALSASE 612

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
            +  ++ E ++ GI + + E  IL+ N A  ++ GY  +D+           +    +  
Sbjct: 613 ARWKAVYENSAAGIVLTDPENRILNANPAFQRITGYGEKDLEGLSMEQLTPSDESPQIKQ 672

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLS----LRIIIKKLPFSSCYSLTMHDISEWKQE 567
            L  +L     +          K    +     + ++ +++  S      + DI+E KQ 
Sbjct: 673 RLANLLQGGGAE-YSVERSYLCKNGSTIWANASVSLMPQRVGESPVILQIIDDITEKKQA 731

Query: 568 KNKLSHAKKIAEKESSH--KSDFLARVSHEIRTPLTAIIGFSE----VIKNQRFGPLGNP 621
           +  L+  ++     S      +F A ++HEI  PL+AI+  +      + N+   P   P
Sbjct: 732 QENLNQLQQQLVYVSRSATMGEFAAYIAHEINQPLSAIMTNANAGTRWLGNE---PSNIP 788

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
              E    I R  +   +I+  +    K    +     +P+ L   V++   +++  +  
Sbjct: 789 EAKEALARIIRDSDRAAEIIRMVRSFLK----RQETVLKPIDLKALVTDTSLILKAPSQN 844

Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG----GQIIISTTHTSNEE- 736
             + +     + +P I  D   ++Q+ +N+  NAI           Q+ +S +     + 
Sbjct: 845 NSVNLDVVADDELPEIWGDGVQIQQLIINLAMNAIEAISQADCETRQLTLSFSGNDTGDA 904

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           +++ V+DTG G++  ++ +    F           EG G+GL +   + + + GK ++  
Sbjct: 905 LVISVKDTGPGISERQMAQLFNAFYTTKK------EGLGMGLAICLTITEVHNGKIWVEC 958

Query: 797 TPAKGTLIEIIFPLYDTS 814
            PA G    +  P    S
Sbjct: 959 PPAGGACFLVSIPARQGS 976



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/150 (8%), Positives = 44/150 (29%), Gaps = 9/150 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH-IDPNNHIGDLLKRQNT-WYGK 146
            D    +   +    +  G     + G+ +  ++           + +LL+     +  +
Sbjct: 629 TDPENRILNANPAFQRITGYGEKDLEGLSMEQLTPSDESPQIKQRLANLLQGGGAEYSVE 688

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
            +     G+ ++    ++ +P               I+ +     + +   + L++    
Sbjct: 689 RSYLCKNGSTIWANASVSLMPQRVGESPV-------ILQIIDDITEKKQAQENLNQLQQQ 741

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRM 236
           L  + +  +  E   Y       P   +  
Sbjct: 742 LVYVSRSATMGEFAAYIAHEINQPLSAIMT 771



 Score = 46.2 bits (108), Expect = 0.021,   Method: Composition-based stats.
 Identities = 27/217 (12%), Positives = 61/217 (28%), Gaps = 11/217 (5%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMR-----LCDVSDILHIDPNNHIGDLLKR 139
           F   +DAHG + E+++   +  G    ++ G          +S          +      
Sbjct: 46  FVGLLDAHGNVLEVNQVALEGGGITLEEIRGKPFWKARWWQISKKTEATQKRLVETA-SS 104

Query: 140 QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199
                    +    G    + +D + LPI +           G            A+   
Sbjct: 105 GEFVRCDVEILGKSGGREVIAVDFSLLPICNEEGSIVYLLAEG--RNITDRKKAEAM--- 159

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
           L  K   L +  +    ++  K D F++ S      +   +  L    A +         
Sbjct: 160 LALKNQELEQSVECIRKLDNAKSDFFAKVSHELRTPLSLILGPLEAVMAAEAGRESPYWK 219

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS 296
                + +++   +  +T+        +  G     +
Sbjct: 220 QFEVIQRNAMTLLKQVNTLLDLAKMDARQMGLSYRRA 256



 Score = 42.7 bits (99), Expect = 0.29,   Method: Composition-based stats.
 Identities = 18/185 (9%), Positives = 41/185 (22%), Gaps = 7/185 (3%)

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
           P    E  +         +  +   K+                 S       +      E
Sbjct: 553 PFSAHELRARVSNLVSMKVAGDALRKELSDQGDDIAILTHRLIKSRHRLQQSNIALSASE 612

Query: 320 NLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
                  +       +      +  ANP+F  +T Y   D +E        L     S  
Sbjct: 613 ARWKAVYENSAAGIVLTDPENRILNANPAFQRITGYGEKD-LEGLSM--EQLTPSDESPQ 669

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
              +   L +      +      +      +++           +  E+     I  +  
Sbjct: 670 IKQRLANLLQGGGAEYSVE---RSYLCKNGSTIWANASVSLMPQRVGESPVILQIIDDIT 726

Query: 439 DTRIN 443
           + +  
Sbjct: 727 EKKQA 731


>gi|332664021|ref|YP_004446809.1| adenylate/guanylate cyclase [Haliscomenobacter hydrossis DSM 1100]
 gi|332332835|gb|AEE49936.1| adenylate/guanylate cyclase [Haliscomenobacter hydrossis DSM 1100]
          Length = 1609

 Score =  293 bits (751), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 73/253 (28%), Positives = 123/253 (48%), Gaps = 7/253 (2%)

Query: 564  WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             ++ + +     +   +  + K  FLA  SHE+RTPL  IIG SE +  +    +     
Sbjct: 905  RQKTEQE-QKVNEQLRRVDALKDQFLANTSHELRTPLQGIIGLSESLIER----VQERDQ 959

Query: 624  IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
             E  + I  S   +  +VND+LD SK+++ ++ L  +PV+L       +  +      K+
Sbjct: 960  QEDLSMIISSSRRLNSLVNDILDFSKLKNQEIELATKPVNLYALTDVVLRNLAPLVQGKK 1019

Query: 684  ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV-ILRVR 742
              I  +  N++P   AD   ++QI  N++ NAI FT +G QI+++       +V  + V+
Sbjct: 1020 FSIINAVPNDLPAAWADENRLQQILYNLVGNAIKFTETG-QIVVNALREKTSDVLTISVK 1078

Query: 743  DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
            DTG+G+   + E   K F Q   S      GTGLGL ++K +V+ + GK ++ S    G+
Sbjct: 1079 DTGIGIPADKQEVIFKEFEQGDGSIARSFAGTGLGLSVSKRLVELHGGKMWLESVVGSGS 1138

Query: 803  LIEIIFPLYDTSH 815
                  PL  T  
Sbjct: 1139 TFFFTLPLASTEA 1151


>gi|303327577|ref|ZP_07358018.1| sensory box histidine kinase/response regulator [Desulfovibrio sp.
           3_1_syn3]
 gi|302862517|gb|EFL85450.1| sensory box histidine kinase/response regulator [Desulfovibrio sp.
           3_1_syn3]
          Length = 780

 Score =  293 bits (751), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 103/496 (20%), Positives = 188/496 (37%), Gaps = 45/496 (9%)

Query: 337 SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA 396
               L Y N +   L                 L                           
Sbjct: 31  DSHELLYMNKAGCELFHVDENALSRRPLCYEVL--------------------QGRDAPC 70

Query: 397 SARLHTIQWNRENSLAMTFIPFEKA-----NQFPENMPQNGIEPEDVDTRINKRKMEIEV 451
               +T            + P  +      ++      +N       D    +R +    
Sbjct: 71  PFCTNTYLNESGFYEWEFYNPCLQRTFLLKDRKVRWNGRNARIEFATDVSGYRRTIAGHE 130

Query: 452 MQLCSILEATSDGIAIIN-REGI-ILSTNRAVSKLFGYPVEDILRKPFTVFL--EQNTPS 507
            +  SIL++   GI  ++ R+G  +L       ++ GY  E+  ++  +  L    +  +
Sbjct: 131 RERDSILQSLPGGIVRVDARDGRTVLWHGARFLEMIGYTAEEFAQELHSRCLYVHPDDLA 190

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII----IKKLPFSSCYSLTMHDISE 563
            +   +  +         E   +    E + L+                 +     DI+E
Sbjct: 191 RIAALMGRLQESGGTDITEIRIVTRGGEVRTLTTTFSYQDAASSPDGIPSFYSVGIDITE 250

Query: 564 WKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
            +  +      L  A + A      K+DFL+++SH+IRTPL AI+G +++   +   P G
Sbjct: 251 IRARQELQQKALEDACRAARAADRAKTDFLSQMSHDIRTPLNAILGMADIAGTRLDDPRG 310

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
                E    I  SG  +L+++N++LD+SKIESG+M L  E + L E V   + +     
Sbjct: 311 ---AGECLKKIQASGRHLLNLINEVLDMSKIESGQMRLAAEDMELAELVRNVLDVCGSLL 367

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-----TSN 734
            EK  ++         R+  D   ++Q+  N+LSNA  +TP+GG I  S        T  
Sbjct: 368 KEKGHVLTVRANVAHERVRGDSGRLQQLFTNLLSNAAKYTPAGGSIAFSIDELPSLNTDV 427

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
                 + D G+GM+   ++   +PF +  + +  + +GTGLGL +++++V    G   +
Sbjct: 428 GLFECVIADNGIGMSEDFVKHLFEPFKRADDPRICKIQGTGLGLVISRSIVRLMGGGIKV 487

Query: 795 FSTPAKGTLIEIIFPL 810
            S P +G+   +  PL
Sbjct: 488 ESRPEEGSRFIVSLPL 503


>gi|284009349|emb|CBA76532.1| two-component system, NarL family, capsular synthesis sensor
           histidine kinase [Arsenophonus nasoniae]
          Length = 952

 Score =  293 bits (751), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 103/372 (27%), Positives = 171/372 (45%), Gaps = 29/372 (7%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           ++E        I+ +   GI I+   +G+ + +N      F     D   +  +      
Sbjct: 351 RLEEHEQFNHKIVASAPVGIIILRLVDGVNILSNELAHDYFRLLSHDDKTRILS------ 404

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564
                      I+       ++ +T   T     L +  +I +          + DIS  
Sbjct: 405 -----------IIQDKSSSYIDVVTTSHTH----LQISYVISRYQNKEVAICVLVDISAR 449

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
            Q +N L +  + +E+ +  KS FLA VSHE+RTPL  IIG  E +      P+   R  
Sbjct: 450 VQMENSLHNMAQASEQANQAKSMFLATVSHELRTPLYGIIGNLE-LLQSYELPIQADR-- 506

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
                +D S +L+L I+ND+LD SKIES ++N+   P +  E  S  IS       +K +
Sbjct: 507 -LLTTMDHSSSLLLKIINDILDFSKIESKQLNIDPAPFNCREVFSFIISNYIPLIGKKGL 565

Query: 685 LIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
            I      ++P I+ AD   V+QI  NILSNAI FT +G  I+++        + + +RD
Sbjct: 566 SIFYYIDPDVPDIINADSVRVQQIISNILSNAIKFTKTGF-ILLNIFIKDF-YIYIEIRD 623

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TG+G+ +  L +   PF QI  + +   +GTGLGLP+ + +++   G   + S    G+ 
Sbjct: 624 TGIGIPDNILMQLFDPFFQIKVNNESFSQGTGLGLPICEKLINLMDGDIEVNSQVGIGSS 683

Query: 804 IEIIFPLYDTSH 815
             +  PL+D+ +
Sbjct: 684 FTVRLPLFDSQY 695


>gi|161936294|ref|YP_131202.2| hybrid sensory histidine kinase BarA [Photobacterium profundum SS9]
          Length = 927

 Score =  293 bits (751), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 86/341 (25%), Positives = 157/341 (46%), Gaps = 17/341 (4%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           LF Y +   + +P +  +      V++      L + +   L             +++ +
Sbjct: 190 LFAYRLMQDVTRPISHMVS-----VVDRIRRGHLDIRIEGQLLGELDTLKNGINAMAISL 244

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
               +           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 245 SEYHIEMQQSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTP 304

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+  +   R          +Y   I++S N +L I+ND+LD SK+E+GK+ L  
Sbjct: 305 LNGVIGFTRQMLKTRLSS----SQHDYLLTIEKSANNLLTIINDILDFSKLEAGKLLLEN 360

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P    E++ E + L+   A+EK + +     + IP  ++ D   ++Q+  N++ NA+ F
Sbjct: 361 IPFDFTESLDEVMRLLAPSAHEKGLELTLKVDDRIPAGLIGDPLRIQQVVTNLIGNAVKF 420

Query: 719 TPSGG---QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T  G     + +  +   + E+   VRDTG+G++  +  +  + F Q   S   R  GTG
Sbjct: 421 TERGNIDVSVELKASKDESIELQFTVRDTGIGISERQQAQLFQAFSQADASISRRYGGTG 480

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           LGL + + +V    G+  + S   +G+       +  T  P
Sbjct: 481 LGLVITQKLVTQMGGEISLTSRLHQGSTFWFSLSMLKTDLP 521


>gi|114568051|ref|YP_755205.1| signal transduction histidine kinase-like protein [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
 gi|114338986|gb|ABI69834.1| Signal transduction histidine kinase-like protein [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
          Length = 804

 Score =  293 bits (751), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 111/795 (13%), Positives = 235/795 (29%), Gaps = 103/795 (12%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTWYGKT 147
           ID +  +   +  L K  G    +M+G    + S   +       I  +LK +     + 
Sbjct: 36  IDINKKIIAWNRALEKMTGITTAQMLGKSNYEYSLPFYRTRRPLLIDYVLKPEQNIPREY 95

Query: 148 TLWPIE------------GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA 195
                E                 + +   A P+Y +N E  G      +           
Sbjct: 96  LSLGRESDAMVCENIIHIEGQEELYLWARAAPLYDQNGELVGA--IESIRDITAQKRIEK 153

Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH---LRMKNKVSSLTEYYAHKDD 252
                +++  ++ E          ++  I      P        +  +        H +D
Sbjct: 154 AIGNNEQRLRYIAEHLLDIIIEIDKRGLIKYNSPSPTLFLKHNPEELMGKPIYNLLHPND 213

Query: 253 V-LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ----NNSKESFEYLSHRN 307
           + L T     +   + S   +        + +  +             +           
Sbjct: 214 IMLLTTTLKEVIKNKVSKSLEIRIKDSEGDYHWVELVVNPQFNNNSEVAGAICVGRVVTE 273

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDI----EI 362
                      E    E  +      F+    G     N +    T +   + +    E 
Sbjct: 274 RKLAEDALKASEERYRELFENANDIVFIQDISGPYLDFNKAAQATTGFTREELLSISMER 333

Query: 363 AGGLSTLLDAPKL------SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
                 L    ++              + L   +R  I        I+++ ++       
Sbjct: 334 LVAPEYLDLTKEMMKQKINQGGATRYEIELIGKNRNIIPVEVSSRLIRYSDQS------- 386

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476
                      +   G   +    R  ++ +  E  +L  IL     GI   +  G+I  
Sbjct: 387 -----------IAIQGTARDITKRRQAEKALAAEKERLALILSRIGHGIITTDNNGVITF 435

Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
            N    + F +  E    K     +         +    +     +  ++   + +  + 
Sbjct: 436 INTEAERFFEWKNEYARGKNMLDVVPLVEDYTNLNRSLLLAYNQKQHPVDIRIINNLGQI 495

Query: 537 KLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
            LLS  +        +         D++E ++ +++L        ++        A ++H
Sbjct: 496 SLLSTTVTHIPGNNGNNHGMVFVFRDVTELRKAESQL-----ALSQKLESIGQLAAGIAH 550

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL------LDIS 648
           EI  P+  I      +             ++         + +LD+V  L      LD  
Sbjct: 551 EINNPMQYIGDNLSFLNEAFANIFSILEQVKALASSQDISSSILDLVKLLEKSQRELDFF 610

Query: 649 KIESGK-MNLHFEPV-SLDEAVSEAISLVQLYANEKRI---------------------- 684
           + E  + +    E V  + + V+   +       EK+I                      
Sbjct: 611 RNEIPQAIQQSLEGVTGVSDIVTALRNFAHPGFGEKQIANINNAIMGTVSIAKNEWKHLA 670

Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIH----FTPSG----GQIIISTTHTSNEE 736
            +  +  N++P +   +  + Q+ LNI+ NA H        G    G+I++S+    +  
Sbjct: 671 DLELNLGNDLPAVKMVVNQINQVLLNIIVNASHSIQDAIEKGLYPKGKIVVSSLINES-Y 729

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA-MVDANMGKFYIF 795
           V +R+ D G+G+ +  + K   PF          G+GTG GL ++   +V+ + G   + 
Sbjct: 730 VEIRISDNGMGIPDTIINKVFDPFFTTK----EVGKGTGQGLAISHDIIVNKHNGSIELE 785

Query: 796 STPAKGTLIEIIFPL 810
           S   +GT   I  P+
Sbjct: 786 SEVGRGTTFYIRLPI 800



 Score =  113 bits (284), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 47/332 (14%), Positives = 108/332 (32%), Gaps = 16/332 (4%)

Query: 318 GENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
            E L     D  P    V   +  +   N +   +T   +   +  +    +L       
Sbjct: 18  SEKLLASIFDSLPDAVLVIDINKKIIAWNRALEKMTGITTAQMLGKSNYEYSLPFYRTRR 77

Query: 377 DNNAIKPV-------MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
                  +         Y S      A    + I    +  L +        +Q  E + 
Sbjct: 78  PLLIDYVLKPEQNIPREYLSLGRESDAMVCENIIHIEGQEELYLWARAAPLYDQNGELVG 137

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
                 +    +  ++ +     +L  I E   D I  I++ G+I   + + +    +  
Sbjct: 138 AIESIRDITAQKRIEKAIGNNEQRLRYIAEHLLDIIIEIDKRGLIKYNSPSPTLFLKHNP 197

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII--KK 547
           E+++ KP    L  N   ++   L E++   + ++LE     S  +   + L +      
Sbjct: 198 EELMGKPIYNLLHPNDIMLLTTTLKEVIKNKVSKSLEIRIKDSEGDYHWVELVVNPQFNN 257

Query: 548 LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD--FLARVSH---EIRTPLTA 602
               +        ++E K  ++ L  +++   +   + +D  F+  +S    +      A
Sbjct: 258 NSEVAGAICVGRVVTERKLAEDALKASEERYRELFENANDIVFIQDISGPYLDFNKAAQA 317

Query: 603 IIGFS-EVIKNQRFGPLGNPRYIEYANYIDRS 633
             GF+ E + +     L  P Y++    + + 
Sbjct: 318 TTGFTREELLSISMERLVAPEYLDLTKEMMKQ 349


>gi|186681111|ref|YP_001864307.1| multi-sensor signal transduction histidine kinase [Nostoc
           punctiforme PCC 73102]
 gi|186463563|gb|ACC79364.1| multi-sensor signal transduction histidine kinase [Nostoc
           punctiforme PCC 73102]
          Length = 722

 Score =  293 bits (751), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 79/524 (15%), Positives = 190/524 (36%), Gaps = 51/524 (9%)

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIA 363
            R          + EN     +D  P     +   G L   N   L + + +S D +   
Sbjct: 210 IRQLQQTELALRQSENRLRAMIDAEPECIKLIARDGTLLEINAEGLAMMEVESPDVLIGK 269

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
                      +          L++S       +     + +        T+      N+
Sbjct: 270 P------IDAVIVPEYRAAFADLHKSICQGNKGTLEFEIVGFKGTRRYMETY-AVPLRNE 322

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
                    +  +    +  ++K+  +      +L+ +++GI + N    IL  N+   +
Sbjct: 323 SDGTFIHLALMRDITQQKQAEQKIREQG----LLLDVSTEGILVRNIYNQILFWNQGAER 378

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           L+G+  E+++ K     L +     +     ++++    +         TKE K++ +  
Sbjct: 379 LYGWKSEEVVGKNVLQLLYKGISPQLEDAYLKVMNTGEWRG---ELHQLTKEGKVIIVES 435

Query: 544 IIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
               +               +I++ KQ + +L  ++++              + H++   
Sbjct: 436 RWILIRDDRGQTKSILSVNTEITQQKQLEAQLLRSQRL-----ESIGTLAGGIVHDLNNI 490

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L+ I+   ++++ +    L + +  +    ++ +     +++  +L  ++   GK  +  
Sbjct: 491 LSPILMSVQLLQKK----LPDSQSQQILQTLENNVKRGANLLKQVLSFARGIEGKRTI-- 544

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719
             V +   ++E   ++      K I+ +     N+  +  D+  + Q+ +N++ NA    
Sbjct: 545 --VQIQPLMAEIEQII-AQTFPKSIICQADIPKNLWYVRGDITQIHQVLINLVVNARDAM 601

Query: 720 PSGGQIIISTT--------------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           P+GG + I+                      V + V DTG+GM++   ++  +PF     
Sbjct: 602 PNGGILRIAAENLVIGEHSAQINIDAKVGSYVAIVVTDTGMGMSSEVQKRIFEPFFTTK- 660

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
                G+GTGLGL  A  ++  + G   ++S   +GT   +  P
Sbjct: 661 ---EVGKGTGLGLSTALGIIKNHGGFVNVYSHVGRGTQFTVYLP 701



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/168 (13%), Positives = 59/168 (35%), Gaps = 4/168 (2%)

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
                +TF      +     +  + +       +  +  +     +L ++++A  + I +
Sbjct: 181 SQKAIVTFFIAAIVDLVLVALLYDLLWRYIRQLQQTELALRQSENRLRAMIDAEPECIKL 240

Query: 468 INREGIILSTNRAVSKLFGY-PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
           I R+G +L  N     +      + ++ KP    +     +     L + +    + TLE
Sbjct: 241 IARDGTLLEINAEGLAMMEVESPDVLIGKPIDAVIVPEYRAAFAD-LHKSICQGNKGTLE 299

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSCYS--LTMHDISEWKQEKNKLS 572
              +G     + +    +  +      +     M DI++ KQ + K+ 
Sbjct: 300 FEIVGFKGTRRYMETYAVPLRNESDGTFIHLALMRDITQQKQAEQKIR 347


>gi|319654258|ref|ZP_08008346.1| hypothetical protein HMPREF1013_04966 [Bacillus sp. 2_A_57_CT2]
 gi|317393958|gb|EFV74708.1| hypothetical protein HMPREF1013_04966 [Bacillus sp. 2_A_57_CT2]
          Length = 543

 Score =  293 bits (751), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 85/402 (21%), Positives = 159/402 (39%), Gaps = 30/402 (7%)

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG 472
           + F+                +     + +  ++ +E    +   I E TSD IA+++R+ 
Sbjct: 162 ILFVGLGVIVGSLLIESYERLIRIITEKKRMEKTLEESESKYRLIAENTSDLIAVMDRDR 221

Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
            +   + +   + GY V ++        +  +        +  I   + R  +       
Sbjct: 222 SLSYLSPSHELVLGYEVAELQNMEVDFVIHPDEAEYFQAGMQRIFENNER--MAMEFRLK 279

Query: 533 TKEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
            +    +        +   +       +   DISE K+ +  L  ++K++        + 
Sbjct: 280 HRGGHWIEFESRCMPVEGENGVIEHVVMISRDISERKKAEEFLLQSEKLSIV-----GEL 334

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
            A V+HEIR PLT I GF +          GN +              + +I  ++L + 
Sbjct: 335 AAGVAHEIRNPLTTIKGFLQ------LYKSGNSQINALL---LSELERIENITTEMLSLG 385

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIA 708
           K ++ +M+       L + +   + L+   AN   I  + +FA+    I  +   +KQ+ 
Sbjct: 386 KPQAIQMDTAK----LTDIIENTVELLSPQANMNGIQFKLNFADGDFLISCEKNQIKQVF 441

Query: 709 LNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
           LNIL NA+     GG I IS    +  E I+  +D G G+ +  L +  +PF  +     
Sbjct: 442 LNILKNAMEAMEKGGDIEISLKDNNEGECIVSFQDQGCGIPDEFLPRLGEPFYTL----- 496

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            + +GTGLGL +   ++  + G     S   +GTLIEI  PL
Sbjct: 497 -KEKGTGLGLMICHKIIKQHHGSIVYKSKIGEGTLIEITLPL 537


>gi|289627984|ref|ZP_06460938.1| sensory box histidine kinase [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289646452|ref|ZP_06477795.1| sensory box histidine kinase [Pseudomonas syringae pv. aesculi str.
           2250]
 gi|298485210|ref|ZP_07003303.1| Sensory box histidine kinase [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|298160198|gb|EFI01226.1| Sensory box histidine kinase [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|330866577|gb|EGH01286.1| sensory box histidine kinase [Pseudomonas syringae pv. aesculi str.
           0893_23]
          Length = 595

 Score =  293 bits (751), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 89/427 (20%), Positives = 172/427 (40%), Gaps = 28/427 (6%)

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK--R 445
            + R      A         E    +T  P   A +      + GI  E +         
Sbjct: 193 IARRFGAPIEALAKAADRIGEGDYEVTL-PISSAAEMNLLTRRFGIMAEALRQHQATNID 251

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           ++     +L ++L++  DG+ +I+R+G +   N    +  G+    + +           
Sbjct: 252 ELLAGQQRLQAVLDSIDDGLLMIDRQGHLEHLNPVAQRQLGWDESRLGQSLGDALGRPEL 311

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISE 563
              ++  L         + L         E +LL+  +              + +HD++E
Sbjct: 312 DEQLHLVLRGGTLERAPEDLAIEI---DGESRLLTYSMTPVSHTKGHILGAVMVLHDVTE 368

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            +  +                +S+F+ R SHE+RTP+T  +  +  +  +R       R 
Sbjct: 369 QRAFE--------------RVRSEFVLRASHELRTPVTG-MHMAFGLLQERLHFAPETRE 413

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            +  N +      ++ ++NDLL+ S+ ++G   L   P S++  + EA +  +  A E+ 
Sbjct: 414 ADLLNTVTEEMQRLMQLINDLLNFSRYQNGLQKLKLAPCSIETLLEEARARFEDKALEQD 473

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
           I++       +PR+ AD   ++++  N+L NA+  TP  G I +       E  I+ V D
Sbjct: 474 IVLMLDMQEPMPRLHADQSQLERVLDNLLDNALRHTPQNGLIRLQ-ARRHGERAIISVED 532

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
            G G+   +  +  +PF Q+      +  G GLGL L K +V  + G+  ++S P +GT 
Sbjct: 533 NGEGIAYGQQGRIFEPFVQV----GRKKGGAGLGLALCKEIVQLHGGRMGVYSRPGQGTQ 588

Query: 804 IEIIFPL 810
             +  PL
Sbjct: 589 FYMALPL 595



 Score = 43.5 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 69/241 (28%), Gaps = 9/241 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G+L+ ++    + +G    + +G  L D      +D       L+ R  T      
Sbjct: 274 IDRQGHLEHLNPVAQRQLGWDESR-LGQSLGDALGRPELDEQ---LHLVLRGGTLERAPE 329

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
              IE       +  +  P+        G     ++H          +  R +      H
Sbjct: 330 DLAIEIDGESRLLTYSMTPVSHTKGHILGA--VMVLHDVTEQRAFERV--RSEFVLRASH 385

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           E++   + +      +  +    P  R  + ++++TE    +   L  +       +   
Sbjct: 386 ELRTPVTGMHMAFGLLQERLHFAPETREADLLNTVTE-EMQRLMQLINDLLNFSRYQNGL 444

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
              +    +I       +  F                   P L A   + E +    +D 
Sbjct: 445 QKLKLAPCSIETLLEEARARFEDKALEQDIVLMLDMQEPMPRLHADQSQLERVLDNLLDN 504

Query: 329 C 329
            
Sbjct: 505 A 505


>gi|300769971|ref|ZP_07079850.1| sensor histidine kinase/respose regulator [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300762447|gb|EFK59264.1| sensor histidine kinase/respose regulator [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 1138

 Score =  293 bits (751), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 76/258 (29%), Positives = 138/258 (53%), Gaps = 4/258 (1%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  + +  ++      E+ S +KS+F+A +SHE+RTPL +I+  ++++K+ +   L    
Sbjct: 462 DLDKARKNITDKINEVEQASKYKSEFMANMSHELRTPLNSILILAKLLKDNKHHNLNTD- 520

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
            I+YA  I  +G+ +L ++N+LLD++KIESG+++L  + + +         L ++ A EK
Sbjct: 521 QIKYATVIHSAGSDLLHLINELLDLAKIESGQIDLVEDQIDIHSLTRNIEGLFRISAEEK 580

Query: 683 RILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
            I  +T+     P   L D   ++Q+  N+LSNA  FT +GG+I ++  H  N  +   V
Sbjct: 581 SINFKTTIDPEAPSTFLCDEYRLEQVLKNLLSNAFKFTLNGGKIELTYKHV-NGNIHFIV 639

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
           +D G+G+   + +   + F Q   S   +  GTGLGL + + +     G+  + S P KG
Sbjct: 640 QDDGIGIAPEKQKLIFEAFKQEDGSTSRKYGGTGLGLSICRELATLLGGRISLESEPDKG 699

Query: 802 TLIEIIFPLYDTSHPHDC 819
           +    I P Y  +  +D 
Sbjct: 700 STFTFILP-YRPAQKNDI 716


>gi|229178913|ref|ZP_04306272.1| hypothetical protein bcere0005_22680 [Bacillus cereus 172560W]
 gi|228604566|gb|EEK62028.1| hypothetical protein bcere0005_22680 [Bacillus cereus 172560W]
          Length = 579

 Score =  293 bits (751), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 88/501 (17%), Positives = 177/501 (35%), Gaps = 41/501 (8%)

Query: 314 YFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                E      +   P+    +  +G+    N    ++T Y + + I     L  L   
Sbjct: 91  LLSRKEEELHTILQNMPVMVDALDYNGDFVLWNRECEIVTGYTAEEIIGNPNALQLLYPD 150

Query: 373 PKLSDNNAIKPVM----LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
                    K +         +      +  + TI W+                      
Sbjct: 151 YNYRHQIQKKFLTCGKNFRDWEMHLTCKNGEVKTIMWSN-----------ISEQFPVTGY 199

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
               +  +    +  + +++ +  +L  I +A  D   +   +G I+         F  P
Sbjct: 200 SYWAVGVDITHLKAIEEQLKQQTSELELIFKALPDLCFLTEDDGTIIDYKAGSPTKFYVP 259

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            E  + K F   L  +        + ++        +E           +         L
Sbjct: 260 AEAFMGKKFYEVLPSSVAQQFQEAINQVKEKGTNVIVEYPLTL---NGSINFFEARCLPL 316

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                  + + DI+E K+ +  L+ +  +A           A V+HE+R PLT I GF +
Sbjct: 317 LHDK-IMIIVRDITERKKTEELLNKSDTLA-----AIGQLAAGVAHEVRNPLTVIKGFIQ 370

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
                    +      +Y + +      +  I+ + L I+K +     ++ E  ++ +  
Sbjct: 371 ------LFQINKEDQEKYFDLMLSEIERIEAILQEFLAIAKTD----EINTEKKNIYQIF 420

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
              +SL+   A    I +     +    I      +KQ+ +NIL N+I   P+GG+I I 
Sbjct: 421 KNVVSLMNTKAIMTNIQVELFTDDKDIIIECSENQLKQVFINILQNSIEAMPNGGEISIH 480

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
               +++ VI+ V D G+G+    +++  +PF         + +GTG+GL L+  +++++
Sbjct: 481 IKEINDDGVIIHVIDEGIGIPEERIKRLGEPFY------STKEKGTGIGLMLSYKIIESH 534

Query: 789 MGKFYIFSTPAKGTLIEIIFP 809
            G   I S    GT + I  P
Sbjct: 535 QGTISIMSEVGIGTTVTIYLP 555


>gi|206972449|ref|ZP_03233394.1| sensor histidine kinase [Bacillus cereus AH1134]
 gi|206732609|gb|EDZ49786.1| sensor histidine kinase [Bacillus cereus AH1134]
          Length = 590

 Score =  293 bits (751), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 88/501 (17%), Positives = 177/501 (35%), Gaps = 41/501 (8%)

Query: 314 YFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                E      +   P+    +  +G+    N    ++T Y + + I     L  L   
Sbjct: 102 LLSRKEEELHTILQNMPVMVDALDYNGDFVLWNRECEIVTGYTAEEIIGNPNALQLLYPD 161

Query: 373 PKLSDNNAIKPVM----LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
                    K +         +      +  + TI W+                      
Sbjct: 162 YNYRHQIQKKFLTCGKNFRDWEMHLTCKNGEVKTIMWSN-----------ISEQFPVTGY 210

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
               +  +    +  + +++ +  +L  I +A  D   +   +G I+         F  P
Sbjct: 211 SYWAVGVDITHLKAIEEQLKQQTSELELIFKALPDLCFLTEDDGTIIDYKAGSPTKFYVP 270

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            E  + K F   L  +        + ++        +E           +         L
Sbjct: 271 AEAFMGKKFYEVLPSSVAQQFQEAINQVKEKGTNVIVEYPLTL---NGSINFFEARCLPL 327

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                  + + DI+E K+ +  L+ +  +A           A V+HE+R PLT I GF +
Sbjct: 328 LHDK-IMIIVRDITERKKTEELLNKSDTLA-----AIGQLAAGVAHEVRNPLTVIKGFIQ 381

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
                    +      +Y + +      +  I+ + L I+K +     ++ E  ++ +  
Sbjct: 382 ------LFQINKEDQEKYFDLMLSEIERIEAILQEFLAIAKTD----EINTEKKNIYQIF 431

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
              +SL+   A    I +     +    I      +KQ+ +NIL N+I   P+GG+I I 
Sbjct: 432 KNVVSLMNTKAIMTNIQVELFTDDKDIIIECSENQLKQVFINILQNSIEAMPNGGEISIH 491

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
               +++ VI+ V D G+G+    +++  +PF         + +GTG+GL L+  +++++
Sbjct: 492 IKEINDDGVIIHVIDEGIGIPEERIKRLGEPFY------STKEKGTGIGLMLSYKIIESH 545

Query: 789 MGKFYIFSTPAKGTLIEIIFP 809
            G   I S    GT + I  P
Sbjct: 546 QGTISIMSEVGIGTTVTIYLP 566


>gi|200389313|ref|ZP_03215924.1| phosphate regulon sensor protein PhoR [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|199601758|gb|EDZ00304.1| phosphate regulon sensor protein PhoR [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
          Length = 431

 Score =  293 bits (751), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 72/427 (16%), Positives = 156/427 (36%), Gaps = 37/427 (8%)

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             +L       +     L  + W     L +         +        G+    +  + 
Sbjct: 33  WFLLAAVTGLLVWHFWNLLRLSW----WLWVDRSMTPPPGRGSWEPLLYGLHQMQLRNKK 88

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            +R++   + +  S  E+  D + +   EG I   N    ++ G    D   +     L 
Sbjct: 89  RRRELGNLIKRFRSGAESLPDAVVLTTEEGGIFWCNGLAQQILGLRWPDDNGQNILNLLR 148

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
               +               +   +         + L +R++           +   D++
Sbjct: 149 YPEFTQYL----------KTRDFTRPLHLVLNTGRHLEIRVMPY---TDKQLLMVARDVT 195

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  Q +                + +F A VSHE+RTPLT + G+ E+++ Q        +
Sbjct: 196 QMHQLEG--------------ARRNFFANVSHELRTPLTVLQGYLEMMQEQALEGATREK 241

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                + +      +  +V  LL +SKIE+    L  E V +   +       Q  + +K
Sbjct: 242 A---LHTMREQTYRMEGLVKQLLTLSKIEAAPALLLNEKVDVPMMLRVVEREAQTLSQQK 298

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
                    +++  +L +   ++    N++ NA++ TP+G  I +S    ++      ++
Sbjct: 299 H-TFTFEVDDSL-SVLGNEEQLRSAISNLVYNAVNHTPAGTHITVSWRRAAHG-AEFCIQ 355

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G G+    + +  + F ++  ++  +  G+GLGL + K  ++ +  +  I S+P KGT
Sbjct: 356 DNGPGIAAEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHALNHHESRLQIDSSPGKGT 415

Query: 803 LIEIIFP 809
               + P
Sbjct: 416 RFSFVLP 422


>gi|329849416|ref|ZP_08264262.1| phytochrome-like protein cph1 [Asticcacaulis biprosthecum C19]
 gi|328841327|gb|EGF90897.1| phytochrome-like protein cph1 [Asticcacaulis biprosthecum C19]
          Length = 497

 Score =  293 bits (751), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 79/407 (19%), Positives = 167/407 (41%), Gaps = 24/407 (5%)

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ-----LCSILEATSDGI 465
           L M+      A + P          +  +       +  +V +     L S+++   +GI
Sbjct: 103 LVMSIRLLPHALKLPSQAQMAEANAKLQEANEKLEALYRQVEEEGRVVLGSVVDNVGEGI 162

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
             ++  G I S N A   +FGY  EDI  +P +V +  +       +L    S       
Sbjct: 163 ITLDETGRIESFNAACEAIFGYEPEDIAGQPLSVLV-PDAEDRHRVWLAVGASG------ 215

Query: 526 EKITLGSTKEEKLLS--LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
            +      K+  +    L I   ++     ++  + DI+  +  +           + ++
Sbjct: 216 -QEVQARRKDGTVFPADLSITAFEVSGKRHHTGIIRDITRIRHAEESRHRLLTRLTESNT 274

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
               F    SH+++ PL  ++ FS++I       L +    EY   +  S + + D+V D
Sbjct: 275 ELERFAYVASHDMQEPLRMVMNFSQIIAKDYHDKLDDE-GREYLKIVADSAHRMRDMVQD 333

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703
           LLD +++  G+  +    V L   +    + +    +E +  I      ++P +  +   
Sbjct: 334 LLDYARL--GREGVRSGDVDLMVELQHVQNNLGTLLSESKAEISCV---SLPSVKGNAVQ 388

Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-VILRVRDTGVGMTNYELEKAMKPFGQ 762
           + ++  N+++N++ + P G    I    +   +  ++  +D G+G+    +E+  +PF +
Sbjct: 389 IMRLMQNLIANSVKYQPKGQAPRIHIYASDEGDNWLIAFKDNGLGIEPSFIEQVFEPFRR 448

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +     IR  GTGLGL + + +V+ + G+ +  S P KG+      P
Sbjct: 449 LHTWDAIR--GTGLGLAVCRKIVENHGGRIWAESEPGKGSTFLFTLP 493



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/173 (10%), Positives = 48/173 (27%), Gaps = 5/173 (2%)

Query: 277 TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-V 335
           +I L  +  K         +    +  + +         +EG  +    VD        +
Sbjct: 106 SIRLLPHALKLPSQAQMAEANAKLQEANEKLEALYRQVEEEGRVVLGSVVDNVGEGIITL 165

Query: 336 YSHGNLFYANPSFLLLTKYKSVDDIEIAGGL----STLLDAPKLSDNNAIKPVMLYRSDR 391
              G +   N +   +  Y+  D       +    +       L+   + + V   R D 
Sbjct: 166 DETGRIESFNAACEAIFGYEPEDIAGQPLSVLVPDAEDRHRVWLAVGASGQEVQARRKDG 225

Query: 392 TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
           T   A   +   + + +           +     E+  +      + +T + +
Sbjct: 226 TVFPADLSITAFEVSGKRHHTGIIRDITRIRHAEESRHRLLTRLTESNTELER 278



 Score = 46.6 bits (109), Expect = 0.016,   Method: Composition-based stats.
 Identities = 26/209 (12%), Positives = 56/209 (26%), Gaps = 18/209 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D  G ++  +       G     + G  L  V      D +     +         +  
Sbjct: 165 LDETGRIESFNAACEAIFGYEPEDIAGQPLS-VLVPDAEDRHRVWLAVGASGQ----EVQ 219

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFR-GFGIVHVNRVDNDPRALGKRLDKKFSHL 207
               +GT     + + A        E SG R   GI+              RL  + +  
Sbjct: 220 ARRKDGTVFPADLSITA-------FEVSGKRHHTGIIRDITRIRHAEESRHRLLTRLTES 272

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
           +   +  + V          Q P   +   +++ +   +    D+  +  K    ++   
Sbjct: 273 NTELERFAYVASHDM-----QEPLRMVMNFSQIIAKDYHDKLDDEGREYLKIVADSAHRM 327

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNS 296
               Q+      L +   +     L    
Sbjct: 328 RDMVQDLLDYARLGREGVRSGDVDLMVEL 356


>gi|239904801|ref|YP_002951539.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239794664|dbj|BAH73653.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 1027

 Score =  293 bits (751), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 73/252 (28%), Positives = 121/252 (48%), Gaps = 11/252 (4%)

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
               +  L  A  +AE  +  KS+FLA +SHEIRTPL  ++G  ++++            
Sbjct: 629 RSMVEQDLQKATHLAETANRAKSEFLANMSHEIRTPLNGVLGMLQLLETTD----QTDEQ 684

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            EY      S   +  +++D+LDIS+IE+G+M +     ++ +       L    A  K 
Sbjct: 685 KEYLFGAISSTKRLTRLLSDILDISRIEAGRMEIVEVEFNIKKTRDSIKELFNPEAKGKG 744

Query: 684 ILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-----EV 737
           + +      ++P +L  D   ++QI  N++ NAI FT  G +I I  +   +       V
Sbjct: 745 LRLEFGRDEDLPLVLVGDEARLRQILFNLVGNAIKFTEKG-EIRIDASLLPSSSDSHVRV 803

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
           ++ VRDTG+G+    L+   +PF Q   S   R +G GLGL + + +V    G   I ST
Sbjct: 804 LVTVRDTGIGIPEEHLKGIFEPFVQAEASYTRRFQGAGLGLSIVRRLVKLMGGDISIDST 863

Query: 798 PAKGTLIEIIFP 809
             +GT + +  P
Sbjct: 864 VGEGTTVYLSLP 875



 Score =  107 bits (267), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 39/305 (12%), Positives = 94/305 (30%), Gaps = 12/305 (3%)

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPE-----TVDKCPIPFFVYS-HGNLFYANPS 347
           + SK S + L+  +         E    + E     T+   P         G + +AN  
Sbjct: 4   DESKTSQQLLAELDAARARISQLEHVVGSVENKWNNTLINAPQIVISLDPSGKIIFANNH 63

Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
           +  LT +   + +      + +   P++  +          +       S   + I    
Sbjct: 64  YFDLTGWNREELLGRNWFDTCI---PEVVRDEIRGIFNSSMTRMHDHDYSTYENDILRRN 120

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
              L + +      +     +    +  +  + R ++  ++    +  ++ E        
Sbjct: 121 GECLTVAWFNVLTLDSQGLPLDVTCMGVDVTERRRSEIALKESEQRFRNLFENAPLAYQS 180

Query: 468 INREGIILSTNRAVSKLFGYPVE-DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
           ++  G  L  NR   +  GY  +  +L K F  FL  +     +          +   +E
Sbjct: 181 LDENGRFLDVNRKWLESLGYEDKVQVLGKWFGDFLAPDYKDHFDINFPMFKQACVIDGVE 240

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
              L        +S    ++     +         DI+E ++ ++KL    +     +  
Sbjct: 241 FEMLRMDGGRITVSFNGRVQADREGNFIRTHCIFTDITERRRAEDKLHVTAERLRLANKA 300

Query: 585 KSDFL 589
            +D +
Sbjct: 301 TNDVI 305



 Score =  101 bits (251), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 38/290 (13%), Positives = 86/290 (29%), Gaps = 14/290 (4%)

Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDI 360
            +             E E       +  P+ +  +  +G     N  +L    Y+    +
Sbjct: 147 GVDVTERRRSEIALKESEQRFRNLFENAPLAYQSLDENGRFLDVNRKWLESLGYEDKVQV 206

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
                      AP   D+  I   M  ++             +       + ++F    +
Sbjct: 207 LGKWFGD--FLAPDYKDHFDINFPMFKQA----CVIDGVEFEMLRMDGGRITVSFNGRVQ 260

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
           A++    +  + I  +  + R  + K+ +   +L    +AT+D I   +        N A
Sbjct: 261 ADREGNFIRTHCIFTDITERRRAEDKLHVTAERLRLANKATNDVIWDWDVTQDTQQWNEA 320

Query: 481 VSKLFGYPV---EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
            + +FG+       +    +   +  +    +N     +++                +  
Sbjct: 321 GTAVFGWTEIVARPVSAHWWVDRVHPDDRERVNDSFFSVVNNPEIDVWHDEYRFMKADGT 380

Query: 538 LLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
              +      L             M DI+E KQ +  L+  K + +KE  
Sbjct: 381 YADVIDRGYLLRDGQGKPIRMIGAMQDITERKQAEASLNSIKWLVDKEVR 430



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/375 (8%), Positives = 88/375 (23%), Gaps = 23/375 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-----NHIGDLLKRQNTW 143
           +D  G +   +       G    +++G    D      +        N     +   +  
Sbjct: 51  LDPSGKIIFANNHYFDLTGWNREELLGRNWFDTCIPEVVRDEIRGIFNSSMTRMHDHDYS 110

Query: 144 YGKTTLWPIEGTNLYV-PIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
             +  +    G  L V   ++  L               G+              K  ++
Sbjct: 111 TYENDILRRNGECLTVAWFNVLTL---DSQGLPLDVTCMGV--DVTERRRSEIALKESEQ 165

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQS-PPPHLRMKNKVSSL----TEYYAHKDDVLKTE 257
           +F +L E          E              L  ++KV  L     ++ A         
Sbjct: 166 RFRNLFENAPLAYQSLDENGRFLDVNRKWLESLGYEDKVQVLGKWFGDFLAPDYKDHFDI 225

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
            +P+          + +   ++  + T         +               +     ++
Sbjct: 226 NFPMFKQACVIDGVEFEMLRMDGGRITVSFNGRVQADREGNFIRTHCIFTDITERRRAED 285

Query: 318 GENLTPETVDKCPIP----FFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
             ++T E +           + +    +    N +   +  +  +    ++         
Sbjct: 286 KLHVTAERLRLANKATNDVIWDWDVTQDTQQWNEAGTAVFGWTEIVARPVSAHWWVDRVH 345

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
           P   D   +        +   I      +           +    +   +   + +   G
Sbjct: 346 PD--DRERVNDSFFSVVNNPEIDVWHDEYRFMKADGTYADVIDRGYLLRDGQGKPIRMIG 403

Query: 433 IEPEDVDTRINKRKM 447
              +  + +  +  +
Sbjct: 404 AMQDITERKQAEASL 418


>gi|24251268|gb|AAN46188.1| unknown protein [Synechococcus elongatus PCC 7942]
          Length = 977

 Score =  293 bits (751), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 90/434 (20%), Positives = 182/434 (41%), Gaps = 17/434 (3%)

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
              +A     L  S    I        +++                 +    +       
Sbjct: 284 DAKDASGQFFLRTSIADAIRQPGAFIRVRYLARPWTEGLQSTQPARQEQMLLVYYRP-WN 342

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
             +  R ++++      +L +I + +     ++   G+I++    +  +        L  
Sbjct: 343 WVIGIRQDEQEFAEPFRRLEAIQQRSLYIQLLL---GVIIAV---LGAIAARGWAAHLGM 396

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555
                              +I +       E   L        ++LR ++  L       
Sbjct: 397 RIEQLAHAADAMASGQLQQQIPTSGRD---ELTVLAQAFNRMAVTLRELLVSLEH----- 448

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
                 +  ++  ++L  A++ AE  +  KS FLA +SHE+RTPL AIIG+SE++  +  
Sbjct: 449 RVQERTAALRETNDRLEQAREQAEAANQAKSAFLANMSHELRTPLNAIIGYSEMMMEEAE 508

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
             +     +     I+ +G  +L+++N +LD+SKIE+G+M L+ E  SL E ++   S++
Sbjct: 509 DGIEVEELLPDFRKINNAGKHLLELINSILDLSKIEAGRMELYLESFSLPELINGVKSII 568

Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
           +    + +  +      +I  + AD+  ++Q  LN+LSNA  FT  G     +      +
Sbjct: 569 KPLIEKNQNQLLVDCPADIGLMTADVTKLRQTLLNLLSNASKFTHQGT--DSAAGCCQGD 626

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
           +V+ +V D+G+GM+  ++++  + F Q  +S   +  GTGLGL +++  ++   GK  + 
Sbjct: 627 QVVFKVVDSGIGMSPEQIDRIFEAFAQADDSTTRKFGGTGLGLSISRHFIEMMGGKITVE 686

Query: 796 STPAKGTLIEIIFP 809
           S   +G+   I  P
Sbjct: 687 SVLGEGSTFTITLP 700


>gi|254520625|ref|ZP_05132681.1| two-component system sensor histidine kinase [Clostridium sp.
           7_2_43FAA]
 gi|226914374|gb|EEH99575.1| two-component system sensor histidine kinase [Clostridium sp.
           7_2_43FAA]
          Length = 578

 Score =  293 bits (751), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 90/374 (24%), Positives = 167/374 (44%), Gaps = 23/374 (6%)

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
            +  +  +  E  +  SI+++ SD I +++    I   N      F    E  + K F+ 
Sbjct: 226 EKSTEGNLIAEKNRSLSIIKSISDPIILLDDAFRIKFINDEGKIFFNIDEESCIDKSFSE 285

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLT 557
            +     S +  Y+TE ++ D     E I +    ++   ++   I K          + 
Sbjct: 286 VI---NLSKVYKYITESVNKDNENREELIEIKRNNKKYFFNITSTIIKGSEEKIDGVVVL 342

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
             +I+  K+ +                K+DF+  +SHE++TPLT+I+    +I ++  G 
Sbjct: 343 FKNITGLKELEI--------------IKADFIGTISHELKTPLTSIMMGVGLINDKNIGS 388

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
           L N +  +    I      + D+V++LL IS I+S K + + +   + E +   +     
Sbjct: 389 L-NDKQRDIVETIKEDVQKLNDLVSNLLKISHIQSNKTSFNIKKSDIKELIKSCLYNFIP 447

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737
            A EK I ++ S    +P ++ D   +K +  N+LSNA+ +T  G  I I   +    ++
Sbjct: 448 LAKEKEIELKLSLEERLPEVMMDEEKIKWVLNNLLSNAVRYTERGS-IKID-GYIKENDI 505

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
           ++ V DTG G+ +  LEK  + F ++   +    E TGLGL +AK +V+ + GK +  S 
Sbjct: 506 LVSVTDTGRGIPSNYLEKVFERFVRVEGFEIPE-ESTGLGLSIAKEIVEIHGGKIWCESE 564

Query: 798 PAKGTLIEIIFPLY 811
              G+      PL 
Sbjct: 565 VGYGSKFIFTIPLS 578


>gi|94268066|ref|ZP_01291073.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93451740|gb|EAT02506.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 709

 Score =  293 bits (751), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 91/331 (27%), Positives = 153/331 (46%), Gaps = 13/331 (3%)

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQ-TLEKITLGSTKEEKLLSLRIIIKKLPFS-- 551
           + F   +      ++   L         +  LE     S   E+ + L   +        
Sbjct: 6   RFFMAAVHPEDREMVEAALDHFRCHPKARNALEFRIGRSDSNERFIHLNGRLILNEEGLP 65

Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
                 + D+++ K+ +  L  AK+ AE+    KS FLA +SHEIRTP+ A+I  S ++ 
Sbjct: 66  KQVVGVILDVTKRKKVERDLIEAKEQAEQADRAKSRFLANMSHEIRTPMNAVINLSRLVL 125

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
                     R  +Y   + RSG  +L I+ND+LD SKIE+GK+ L   P  L E + + 
Sbjct: 126 QDELTS----RQRDYVGKVLRSGENLLAIINDILDFSKIEAGKLELESVPFGLRELIDDV 181

Query: 672 ISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI-IIST 729
           +  +   A++K I  R   A  +P  ++ D   ++QI LN++SNAI FT  G  +  +  
Sbjct: 182 VVPLSPTAHDKAIGFRVELAEELPERLVGDATRLRQILLNLVSNAIKFTEQGEVLLKVQL 241

Query: 730 THTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
                ++V +   V D+G+G++  + ++  + F Q  +S   R  GTGLGL + K ++  
Sbjct: 242 LKRQGDQVTIAFKVSDSGIGISPAQQQRLGESFRQADDSINRRFGGTGLGLAITKQLLGL 301

Query: 788 NMGKFYIFSTPAKGT--LIEIIFPLYDTSHP 816
              +  + S P  G+     I   L D + P
Sbjct: 302 MGSELEVESAPGAGSNFAFTIQLALADDASP 332


>gi|108761451|ref|YP_631301.1| sensory box histidine kinase [Myxococcus xanthus DK 1622]
 gi|108465331|gb|ABF90516.1| sensory box histidine kinase [Myxococcus xanthus DK 1622]
          Length = 390

 Score =  293 bits (751), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 84/377 (22%), Positives = 152/377 (40%), Gaps = 21/377 (5%)

Query: 448 EIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
           +    QL  ++E+ +D  I  ++ +G + S N    ++ GY  ++IL + F+ F      
Sbjct: 24  QDAADQLRLLIESVTDHAILTLDLDGYVASWNPGAERIKGYRADEILGQHFSRFYPPEAV 83

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDIS 562
           +        +         E+      K+       ++I  L         +     D +
Sbjct: 84  ARNRPR-HGLEVATREGRFEEDGWRVRKDGSRFWANVVITALYDETGQLRGFGKVTRDFT 142

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ----RFGPL 618
              Q + +     +   +    + DFL+  SHE+RTPLT +      ++        G L
Sbjct: 143 ARYQAQEQREM--ERLREALRIRDDFLSVASHELRTPLTPLQLKLTAMRRAVDSAPGGML 200

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
            + R     +   R    ++++V+DLLD+S+I  G++ L   P  L   + E ++     
Sbjct: 201 PSERVERDLDVAVRQVRKLVELVDDLLDVSRISVGQLALERVPADLTALLREVVARYLPQ 260

Query: 679 ANEKRILIRTSFANNIPRILA--DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
           A++    +          +    D R V+Q+  N+LSNA+ +   G  I +S        
Sbjct: 261 ASQLGSTVELDAPA---PVQGEWDTRRVEQVMTNLLSNALKYGG-GKPIHVSLRAE-GGM 315

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
            +L VRD G+G+    L      F +  +       G GLGL +A  +V A+ G   + S
Sbjct: 316 ALLSVRDEGIGIAPEALPHVFDRFMRAVSG--RNFSGLGLGLFIAHQVVSAHGGDIQVSS 373

Query: 797 TPAKGTLIEIIFPLYDT 813
            P KG+   +  PL  T
Sbjct: 374 VPDKGSTFSVRLPLGPT 390



 Score = 65.4 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 21/230 (9%), Positives = 53/230 (23%), Gaps = 1/230 (0%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D  GY+   +    +  G  A +++G           +  N     L         +  
Sbjct: 45  LDLDGYVASWNPGAERIKGYRADEILGQHFSRFYPPEAVARNRPRHGLEVATREGRFEED 104

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
            W +         ++    +Y    +  GF         R     +   +RL +      
Sbjct: 105 GWRVRKDGSRFWANVVITALYDETGQLRGFGKVTRDFTARYQAQEQREMERLREALRIRD 164

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE-YYAHKDDVLKTEKYPLLTSEES 267
           +     S   +        +       + +    +       +D  +   +   L     
Sbjct: 165 DFLSVASHELRTPLTPLQLKLTAMRRAVDSAPGGMLPSERVERDLDVAVRQVRKLVELVD 224

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
            L +        L           L       +   + +   ++      
Sbjct: 225 DLLDVSRISVGQLALERVPADLTALLREVVARYLPQASQLGSTVELDAPA 274


>gi|262198421|ref|YP_003269630.1| signal transduction histidine kinase with CheB and CheR activity
            [Haliangium ochraceum DSM 14365]
 gi|262081768|gb|ACY17737.1| signal transduction histidine kinase with CheB and CheR activity
            [Haliangium ochraceum DSM 14365]
          Length = 1698

 Score =  293 bits (751), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 114/800 (14%), Positives = 233/800 (29%), Gaps = 112/800 (14%)

Query: 108  NYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR--QNTWYGKTTLWPIEGTNLYVPIDLAA 165
              A  ++G+   DV   +     + + + L R  +      +T     GT          
Sbjct: 783  PPASDLLGIDHGDVGRYVGDIARDLLQNQLAREARGVLDHLSTHSRELGTENGRWFTRQV 842

Query: 166  LPIYSRNREFSGFR-GFGIVHVNRVDNDPRALGKRLDKKFSHL-------HEIKKGHSSV 217
            LP  + NR   G    F  V   R   +  A+ +R     S L        +++     V
Sbjct: 843  LPYRTENRRIEGVVVTFVDVTELRATTERLAVRERQQAVISRLGLDALKEPDLQGFMEQV 902

Query: 218  EKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD----VLKTEKYPLLTSEESSLPEQE 273
             +E                  +   L       D+               +  +    + 
Sbjct: 903  TREVQQTLDTDFCKILELQPGRKRFLLRAGVGWDEGEVGTASVHAGLDSQAGFTLQTSEP 962

Query: 274  DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF 333
                   ++         +++               ++        +       +     
Sbjct: 963  VIVEDLASERRFSGPPLLVEHGVVSGLSCREDFGVIAVHTRTRRLFSREDAHFLQSAASV 1022

Query: 334  FVYSHGNLF----------------------YANPSFLLLTKYKSVDDIEIAGGLS---- 367
               + G                          A    L     +S   +           
Sbjct: 1023 IGAAVGRHLTRLRLGIERAVARELSEPTAPEDALRRLLSCFTRESGASVGELWWPEPGGK 1082

Query: 368  -----TLLDAPKLSDNNAIKPVMLYR------------SDRTCIA----ASARLHTIQWN 406
                  L     + ++   + +                 D   +         L   +  
Sbjct: 1083 ELSCRMLYTDHGVHEDEVREQLGSRTFPPGDGLVGHVYRDGRAVWCTDIGDPDLFPRRDA 1142

Query: 407  RENSLAMTFIPFEKANQFPENMPQNGIEPEDVD-----------------TRINKRKMEI 449
                  +T +                +  E +                    + + ++E 
Sbjct: 1143 AREFGLVTGLGIPLVAGSESLGVIVVLSRERIIADDSFLRSLEGVGRSIGDALARAEVED 1202

Query: 450  EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
            +  +L +I E++ D I     +G I         L+GY  E+++     + +     + +
Sbjct: 1203 KARRLAAIAESSHDAILTFGFDGRIREWLGGAQHLYGYAAEEVVGASIDMLVPGERRAEL 1262

Query: 510  NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM----HDISEWK 565
               +  +   +L +   + ++   K+  L+ + +    +       + +     D++  K
Sbjct: 1263 EDMMGRVQRGELLEP--QESVRRRKDGSLVEVSVRSSPIRDPHGRVVAVSSTDRDVTRQK 1320

Query: 566  QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
            + + +L       +     K +FLA + HE+R PL AI   +E +           R   
Sbjct: 1321 ETERRL-------KAADRQKDEFLAMLGHELRNPLAAIRSAAEFLHLHGDDSPQLERTR- 1372

Query: 626  YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
                ++R    +  +++ LLDIS+I SGK+ L  E V       E  +  +  A+   I 
Sbjct: 1373 --VIVERQSAHMAKLLDGLLDISRIISGKIRLETEVVDFSAICREVAADAKPRASALDIH 1430

Query: 686  IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
             +T        +  D   + Q+  N+LSNA+ FT +GG + IS      E V++ VRDTG
Sbjct: 1431 FQTDLMVAPIWLECDRVRITQVVDNLLSNALKFTEAGGSVTISLWREGGEGVLV-VRDTG 1489

Query: 746  VGMTNYELEKAMKPFGQIPNSQQIRG--------EGTGLGLPLAKAMVDANMGKFYIFST 797
            +GM    L      F Q   S                       +++ + + G     S 
Sbjct: 1490 IGMEPDLLPVVFDVFRQSEQSLDRSHGGLGLGLAL--------VRSLTELHGGSVAAHSE 1541

Query: 798  -PAKGTLIEIIFPLYDTSHP 816
                G+   +  P+ + S P
Sbjct: 1542 GRGHGSEFVVRLPITERSAP 1561



 Score = 62.7 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/400 (8%), Positives = 96/400 (24%), Gaps = 12/400 (3%)

Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254
                L        E   G++S  +             H + + +  +     A     +
Sbjct: 498 RPISVLRSIQRQPSERDGGNASGGQAGESPHGHGHGHGHGQARREGVNDLARRAVLRTRV 557

Query: 255 KTEKYPLLTSEESSLPEQED--FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
                         +  +          +    +         +  +   L        +
Sbjct: 558 APTIVVGGDGSVLFMHGELRPYLRFPEGDSPRFELASLVAPELATRTRGALYKCRRDGET 617

Query: 313 AYFDEGENLTPET-VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
                  +   E+ V     P   +  G +  +          + ++      G   +++
Sbjct: 618 VIALSSPDEGRESRVRIVATPAHEFGDGAVVLSFDELESEVAVRPMEA--EESGTGAVIE 675

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
             +       + +     +        R    +    N    +     +A          
Sbjct: 676 QLEKELQATQEDLRNTVEELETSNEELRSSNEESMSMNEELQSANEELEATTEELRSLNE 735

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
            +   +   R    ++E     L +   +T      ++    I       S L G    D
Sbjct: 736 ELTTVNSQLREKVEQLEQTHDDLTNFFSSTKIATIFLDDRLCIKRFTPPASDLLGIDHGD 795

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
           +       ++      ++ + L       L           T+  +  + +++  +    
Sbjct: 796 V-----GRYVGDIARDLLQNQLAREARGVLDHLSTHSRELGTENGRWFTRQVLPYRTENR 850

Query: 552 S--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
                 +T  D++E +    +L+  ++     S    D L
Sbjct: 851 RIEGVVVTFVDVTELRATTERLAVRERQQAVISRLGLDAL 890


>gi|241203070|ref|YP_002974166.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240856960|gb|ACS54627.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 713

 Score =  293 bits (751), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 69/382 (18%), Positives = 153/382 (40%), Gaps = 26/382 (6%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            +E E ++  +++  T D + +I+  G I + N A   +FGY  ++ + K   + + +  
Sbjct: 328 NLETERVRFGALVRGTPDAVVVIDERGTIRNFNPAAESMFGYSPQETIGKNIKMLMPEPY 387

Query: 506 PSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKL--PFSSCYSLTMHDI 561
            S  + YL         + +   ++  G  K   +  + + I  +    +  +   + DI
Sbjct: 388 HSEHDGYLAHYRQTGDERIIGTTRMVSGRRKNGIVFPIDVSISAVVTGHTKTFVGIVRDI 447

Query: 562 SEWKQEKN-------KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
           SE  +++        +L       E+ +    +F    SH+++ PL  +   S  +    
Sbjct: 448 SERVRQEERMKTTLSQLEAYTAELERSNHDLDEFAYIASHDLKEPLRGLHNHSRFLLEDY 507

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
              L         N + R    +  +VN+LL  S++  G+  L  +   +   V + ++ 
Sbjct: 508 EDKLDADGVRR-LNRLVRLSQRMEKLVNELLYFSRL--GRQQLAVKRTDIGLIVKDVVAT 564

Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS- 733
           ++L   E+   +       +P ++ D   + ++  N+++NAI +      + +S  +   
Sbjct: 565 MELLLEERHAKVI--IDGRLPEVVCDATRLTEVFRNLITNAIKYNDKPAPL-VSIGYLDR 621

Query: 734 ----NEEV---ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
               +  V   +  V+D G G+     E   + F ++  SQ    +GTG GL   + ++ 
Sbjct: 622 FVGKDGTVARNVFFVKDNGKGIPREFHEDIFRIFKRLEKSQDSD-DGTGAGLTFVRKIIA 680

Query: 787 ANMGKFYIFSTPAKGTLIEIIF 808
            + G  ++ S    GT      
Sbjct: 681 RHNGDIWLESEVGTGTTFYFTL 702



 Score = 55.0 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 37/367 (10%), Positives = 94/367 (25%), Gaps = 36/367 (9%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD-ILHIDPNNHIGDLLKRQNTWYGKT 147
           ID  G ++  +       G    + IG  +  +     H + + ++    +  +     T
Sbjct: 350 IDERGTIRNFNPAAESMFGYSPQETIGKNIKMLMPEPYHSEHDGYLAHYRQTGDERIIGT 409

Query: 148 TL----WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK-RLDK 202
           T         G    + + ++A+ +    + F G     IV             K  L +
Sbjct: 410 TRMVSGRRKNGIVFPIDVSISAV-VTGHTKTFVG-----IVRDISERVRQEERMKTTLSQ 463

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
             ++  E+++ +  +++  Y        P      +    L +Y    D         L+
Sbjct: 464 LEAYTAELERSNHDLDEFAYIASHDLKEPLRGLHNHSRFLLEDYEDKLDADGVRRLNRLV 523

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
              +       +    +             Q  + +  +          +      E   
Sbjct: 524 RLSQRMEKLVNELLYFSRLGR---------QQLAVKRTDIGLIVKDVVATMELLLEERHA 574

Query: 323 PETVD-KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
              +D + P      +     + N     +        +   G L   +      D    
Sbjct: 575 KVIIDGRLPEVVCDATRLTEVFRNLITNAIKYNDKPAPLVSIGYLDRFVGK----DGTVA 630

Query: 382 KPVMLYRSDRTCIAASARLHTIQW----------NRENSLAMTFIPFEKANQFPENMPQN 431
           + V   + +   I         +           +      +TF+    A    +   ++
Sbjct: 631 RNVFFVKDNGKGIPREFHEDIFRIFKRLEKSQDSDDGTGAGLTFVRKIIARHNGDIWLES 690

Query: 432 GIEPEDV 438
            +     
Sbjct: 691 EVGTGTT 697


>gi|228997617|ref|ZP_04157227.1| hypothetical protein bmyco0003_21910 [Bacillus mycoides Rock3-17]
 gi|229005218|ref|ZP_04162936.1| hypothetical protein bmyco0002_21570 [Bacillus mycoides Rock1-4]
 gi|228756029|gb|EEM05356.1| hypothetical protein bmyco0002_21570 [Bacillus mycoides Rock1-4]
 gi|228762126|gb|EEM11062.1| hypothetical protein bmyco0003_21910 [Bacillus mycoides Rock3-17]
          Length = 577

 Score =  293 bits (751), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 98/508 (19%), Positives = 189/508 (37%), Gaps = 33/508 (6%)

Query: 314 YFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
              + E      +   PI    +  +GN    N    L+T Y + + +     L  L   
Sbjct: 93  LLSQKEEQLHTILQNMPIMVDALDKNGNFILWNRECELVTGYAAEEIVGNPKALELLYPD 152

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
                    K  +  +S R        ++    N E    M     E+      +    G
Sbjct: 153 ESYRRQLQKKFSIRGKSFR-----DWEMNLTCKNGEIKTIMWSNISEQFPVAGYSYWAVG 207

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
           +  +    +  + +++ +  +L  I +A  D   +   +G I+         F  P E  
Sbjct: 208 V--DITHRKGIEEQLKQQTSELELIFKALPDLCFLTEADGTIIDYKAGSPAKFYVPAESF 265

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
           + K F   L           + ++   +    +E           +         L    
Sbjct: 266 MGKKFYEVLPSPVAQQFQEAIHQVQQKESTVIVEYPLTLK---GSVSFFEARCLPLLQDK 322

Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
              + + DI+E K+ +  L+ +  +A           A V+HE+R PLT I GF +    
Sbjct: 323 -IMIIVRDITERKKTEELLNKSDTLA-----AIGQLAAGVAHEVRNPLTVIKGFIQ---- 372

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
                +      +Y + +      +  I+++ L I+K +     +  E  +L   +   +
Sbjct: 373 --LFQINQEDQDKYFDLMLSEIERIEAILHEFLSIAKTD----VISTEKKNLCSILKNVV 426

Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
           SL+   A    I I     +    I      +KQ+ +NIL N+I   P+GG+I I    +
Sbjct: 427 SLINTKAIMTNIQINLHIESKELMIDCCENQLKQVFINILQNSIEAMPNGGEISIYVKKS 486

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
             EEV++ + D GVG+    +++  +PF         + +GTG+GL L+  +++++ G+ 
Sbjct: 487 EREEVMINMVDEGVGIPEERIKRLGEPFY------STKEKGTGIGLMLSYKIIESHQGRI 540

Query: 793 YIFSTPAKGTLIEIIFPLYDTSHPHDCI 820
            I S    GT + I  P++ +     C+
Sbjct: 541 SIMSEVGIGTSVTIYLPMFQSEQVTSCV 568


>gi|148553194|ref|YP_001260776.1| PAS/PAC sensor signal transduction histidine kinase [Sphingomonas
           wittichii RW1]
 gi|148498384|gb|ABQ66638.1| PAS/PAC sensor signal transduction histidine kinase [Sphingomonas
           wittichii RW1]
          Length = 631

 Score =  293 bits (751), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 80/553 (14%), Positives = 180/553 (32%), Gaps = 30/553 (5%)

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP--SLSAYFDEGENLTPETVD 327
           P                     L  + + +   L+         +    E  +     +D
Sbjct: 85  PLDHARAADLAGFLLVAAVIVGLSRSVERTRRRLAQDKLEGYRRAVAASETADELNLLID 144

Query: 328 KCPIPF--FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
                    +   G +   N     L  +   + +     ++       ++       + 
Sbjct: 145 GATDHAIYMLDPDGRVTIWNKGAERLMGWSEAEAVGQP--IAFFYPPEAVAAGKPAADLD 202

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
             R +            I+ +    LA         ++  +      +  +  + R  +R
Sbjct: 203 RARQEGR---FEEEEWRIRKDGSQFLA-HMSLTALYDEHRQLRGFGKVIRDVTEQRAVER 258

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           ++     Q+ SIL    D + +I+  G+I+S + A  +LFGY   ++L    +  +    
Sbjct: 259 QLRSSAGQMRSILSTVPDAMVVIDARGLIISFSAAAERLFGYAEAEMLGSNVSRLMPSPY 318

Query: 506 PSVMNHYLTEILSLDLRQT--LEKITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDI 561
               + YL        R    + +  +G  ++     + + + +        ++  + D+
Sbjct: 319 RERHDSYLDRYARTGERHIIGIGRKVIGQKRDGSTFPMELSVGEAEAGGEPVFTGFIRDL 378

Query: 562 SEWKQEKNKLSHAKKIAEKESS--HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL- 618
           SE  + + ++   +      +         + ++HE+  P+TA++ + E +++    P  
Sbjct: 379 SEAVRMEERIEDLRSDLIHVARVSAMGTMASTLAHELNQPITAVVNYVETVRDMLVEPKA 438

Query: 619 -GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
              P   E              IV  L +       + ++      L   +  A  L  +
Sbjct: 439 GDLPVIREALAESASEAMRAGQIVRRLREY----VARGDVEKTVEDLPALIDVAAKLGLI 494

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ--IIISTTHTSNE 735
            A E+ + +R         +L D   ++Q+ +N++ NAI          + I T    + 
Sbjct: 495 GAQERGVELRFDVDPLAGPVLVDRVQIQQVLINLMRNAIEAMADSPVRLLRIETRREGDG 554

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            V + V D+G G+           F         +  G GLGL + + +V+AN G+    
Sbjct: 555 MVRVTVADSGHGVAPEIEAGLFSAF------NSTKAGGMGLGLSICRTIVEANGGRITYE 608

Query: 796 STPAKGTLIEIIF 808
             P  G+      
Sbjct: 609 RDPGGGSRFHFTL 621



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/357 (10%), Positives = 85/357 (23%), Gaps = 4/357 (1%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + +D  G +   ++   + +G    + +G  +        +       DL + +     
Sbjct: 151 IYMLDPDGRVTIWNKGAERLMGWSEAEAVGQPIAFFYPPEAVAAGKPAADLDRARQEGRF 210

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFG-IVHVNRVDNDPRALGKRLDKKF 204
           +   W I          ++   +Y  +R+    RGFG ++             +    + 
Sbjct: 211 EEEEWRIRKDGSQFLAHMSLTALYDEHRQL---RGFGKVIRDVTEQRAVERQLRSSAGQM 267

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
             +         V   +  I S  +    L    +   L    +        E++     
Sbjct: 268 RSILSTVPDAMVVIDARGLIISFSAAAERLFGYAEAEMLGSNVSRLMPSPYRERHDSYLD 327

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
             +   E+            K+         S    E               E   +   
Sbjct: 328 RYARTGERHIIGIGRKVIGQKRDGSTFPMELSVGEAEAGGEPVFTGFIRDLSEAVRMEER 387

Query: 325 TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
             D       V     +     +            +     +  +L  PK  D   I+  
Sbjct: 388 IEDLRSDLIHVARVSAMGTMASTLAHELNQPITAVVNYVETVRDMLVEPKAGDLPVIREA 447

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
           +   +     A        ++     +  T             +   G +   V+ R
Sbjct: 448 LAESASEAMRAGQIVRRLREYVARGDVEKTVEDLPALIDVAAKLGLIGAQERGVELR 504


>gi|95931367|ref|ZP_01314079.1| periplasmic sensor signal transduction histidine kinase
           [Desulfuromonas acetoxidans DSM 684]
 gi|95132583|gb|EAT14270.1| periplasmic sensor signal transduction histidine kinase
           [Desulfuromonas acetoxidans DSM 684]
          Length = 704

 Score =  293 bits (751), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 79/389 (20%), Positives = 162/389 (41%), Gaps = 45/389 (11%)

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
           +  E  + +  ++ +     +     E+ +D I I++ +G I   N A  ++       +
Sbjct: 334 LHQEIEERQQAEQDLIANEHEWSITFESITDAITILDPQGNIRKQNLAARRISNSYGSAL 393

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
                   L     +        +      Q +    + +        + I         
Sbjct: 394 KNSSQRKNLVPVAGAPSPLLEQAVTEQSAVQQVYHDAVTN----SYFRITITPLIYAGEM 449

Query: 553 -CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
                 +HDI+E  + +                KS+ +A VSHEIRTPLTAI+GF E ++
Sbjct: 450 LGAVQLVHDITEQTRSE--------------KLKSETVAAVSHEIRTPLTAIMGFVEFMQ 495

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
           N             Y   I +    + +++ND LD+ +++S  +   F PV L+E + + 
Sbjct: 496 NNETTA---AERRSYFVTIQKEMERLQELMNDFLDLQRLQSSLVPYLFGPVDLEEVLQDT 552

Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
           ++L ++ +   +++  +    NIP+I  D + ++Q+  NILSNA+ ++P GG +  S   
Sbjct: 553 VNLFRMVSEHHQLVFNS--PGNIPKITGDSKRLQQVFKNILSNAVKYSPDGGTVTTSLRI 610

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL----------A 781
           +    V + ++D G+G+   + EK    F ++ +S +           +           
Sbjct: 611 S-QGHVFVWIKDEGIGIPPQDQEKIFNRFYRVDDSDRR----------IPGGLGLGLTLV 659

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           + +V+A+ G+ ++ S   KG+   +  P+
Sbjct: 660 QEIVNAHQGRVWVESALGKGSTFFVELPI 688


>gi|293607347|ref|ZP_06689686.1| sensor histidine kinase/response regulator [Achromobacter
           piechaudii ATCC 43553]
 gi|292814191|gb|EFF73333.1| sensor histidine kinase/response regulator [Achromobacter
           piechaudii ATCC 43553]
          Length = 939

 Score =  293 bits (751), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 112/646 (17%), Positives = 210/646 (32%), Gaps = 58/646 (8%)

Query: 176 SGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR 235
           + F   G V V  +   P A    L      L  + + ++ +      ++S       + 
Sbjct: 97  THFGKTGQVEVLPLQEGPDAYDWALVLTPRDLRRVAQANTRI------VYSAVRHASTVP 150

Query: 236 MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN 295
           + +     T                 + +   S            +   K+ +  T  + 
Sbjct: 151 VASHDQPATPAIPASIQQWLALTLADVQTRAPSNGLSPIVWLHPPHDTVKRLFLFTPLDA 210

Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTP-ETVDKCPIPFFVYSHGNLFYANPSFLLLTKY 354
                 ++    H   SA              D+   P           A+   L  T  
Sbjct: 211 VHPEAAWIGLEVHGVESAVNAPRTGAGDYVLFDEMSRPVL-----RSAGASTQALPHTTR 265

Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
           +    ++  G L   L   K    +  + V             A +  +  +   +    
Sbjct: 266 EDAFGLQGQGWLPDYLVLSKSVGEDGWRLVYY-----------APMRHVLRDNAIAFQTA 314

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI- 473
            I             +       +        +   V     ++E    G+ ++ R    
Sbjct: 315 AIASLLLIITVVMRVRYIRRRLVLPALRQYEALADSVSLNRKLIEVAPVGLCLLRRSDRA 374

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
           ++ +N    + F                              + +       E       
Sbjct: 375 VVLSNDMARRWFQGTPGW--------------------RTEILSAQGDEAGREH----RL 410

Query: 534 KEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
            + +   L          +     + DIS  K+ +  L  AK+ AE  +  K+ FL  +S
Sbjct: 411 NDGRTAYLSFAPTTYRGEAVVLCGISDISALKRIEQSLLQAKRDAEAANQAKTVFLTTMS 470

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HEIRTPL  I+G  E+    R       +  +Y   I +S   +L  +ND LD+S+IE+G
Sbjct: 471 HEIRTPLYGILGTLELFSLTRVSG----QQAQYLETIQQSSATLLRTINDTLDLSRIEAG 526

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNIL 712
              L   P S  E ++  ++     A+ K +        + P  ++ D   ++QI  N+ 
Sbjct: 527 HTVLERAPFSPVELLNNVVASFAARAHAKGVRSYAVADPDAPPAVIGDATRIRQILDNLA 586

Query: 713 SNAIHFTPSGGQI---IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
           +NAI FT SG  +    +++    + ++  ++ DTG G+      +  +P+ Q+     +
Sbjct: 587 NNAIKFTDSGQIVLRLKVNSRTRDSVDLCFQIADTGAGIAPKHQARLFEPYYQVDADNCV 646

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT--LIEIIFPLYDT 813
              GTGLGL + +++ D   G+    S P  GT    EI  PL   
Sbjct: 647 TLPGTGLGLSICRSLSDMMNGRLNAVSEPGLGTSITFEIRLPLAPE 692


>gi|332560034|ref|ZP_08414356.1| Multi-sensor hybrid histidine kinase precursor [Rhodobacter
           sphaeroides WS8N]
 gi|332277746|gb|EGJ23061.1| Multi-sensor hybrid histidine kinase precursor [Rhodobacter
           sphaeroides WS8N]
          Length = 825

 Score =  293 bits (750), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 108/574 (18%), Positives = 197/574 (34%), Gaps = 41/574 (7%)

Query: 259 YPLLTSEESSLPEQEDFHTINLNQ-YTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
                    +   +E F  ++       +     L  N  +    L         A    
Sbjct: 3   AGATAIIGLANDARERFQQLDYIVTDGVQTRLSDLDGNLSQFASALGVTGSSPSPAAVRT 62

Query: 318 GENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
                 E + +                     +L      + I               + 
Sbjct: 63  SLRQLQEGLAQLDTAM------------AEAGVLWDPAYGEGIARLRQFERDRADLIAAP 110

Query: 378 NNAIKPVM--LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE- 434
           N  +   M  L R+      A A L         S  +       ++         G+  
Sbjct: 111 NATVTAAMPGLTRALPHLEQAVAELSATASADRESRNLENRAIIGSSIMRLVALTIGLVL 170

Query: 435 ----------PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
                        + +R           +L +I   ++D I + +    ++  NRA   +
Sbjct: 171 MLSAGSFQLLRLYLRSREQAEAAGRASARLEAIFRISADAILVTDWSARVIDCNRAALAI 230

Query: 485 FGYPVEDILRKPFTVFLEQNT-----PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
           FG+  E +        L            +   L       +   L         +    
Sbjct: 231 FGHQRERLAGADAMELLFPAELQGRQRMRVVDALRN-SDPRIDGPLRLELEAVHADGSRF 289

Query: 540 SLRIIIK--KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
            + + +   ++         M DIS  ++ + +L+ A+  A      K+DFLA +SHE+R
Sbjct: 290 PVEVSLAAARVEGEDIIVALMRDISARRRAERELTEARDRALAGEQTKADFLAVMSHEMR 349

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TPL  + G  E++         +PR  E  + +  S  ++LD VN +LDI++ E+     
Sbjct: 350 TPLNGLAGSLELLAQTPL----DPRQRELVSVLRASAEILLDHVNSVLDIARSEARPSVA 405

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTS-FANNIPRILADLRSVKQIALNILSNAI 716
                 LD  + + I+    +A      I        +  +  + + ++Q+ LN+L+NA+
Sbjct: 406 EMVDFDLDRLIEDCIANQSGFAAVVGNRIDHRPLTGPVGILNGEPQRLRQVLLNLLNNAV 465

Query: 717 HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
            FT   G+II+ +      +V +RV DTG+G+    LEK    F  +  S + R  GTGL
Sbjct: 466 KFT-RNGRIIVESEVQ-GADVEIRVLDTGIGIAPENLEKVFDDFVTLDASYERRSGGTGL 523

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           GL +A+ +     G   + STP +G+   +  PL
Sbjct: 524 GLGIARRLARIMGGDLTVQSTPGRGSRFTLRLPL 557



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/323 (8%), Positives = 65/323 (20%), Gaps = 40/323 (12%)

Query: 168 IYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ 227
           +   +   S F     V  +           R  ++     +     + V  +       
Sbjct: 34  LSDLDGNLSQFASALGVTGSSPSPAAVRTSLRQLQEGLAQLDTAMAEAGVLWDPAYGEGI 93

Query: 228 QS------------PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDF 275
                           P+  +   +  LT    H +  +           ES   E    
Sbjct: 94  ARLRQFERDRADLIAAPNATVTAAMPGLTRALPHLEQAVAELSATASADRESRNLENRAI 153

Query: 276 HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV 335
              ++ +         L  ++        +      +                      V
Sbjct: 154 IGSSIMRLVALTIGLVLMLSAGSFQLLRLYLRSREQAEAAGRASARLEAIFRISADAILV 213

Query: 336 YS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY------- 387
                 +   N + L +  ++  + +  A  +  L  A             L        
Sbjct: 214 TDWSARVIDCNRAALAIFGHQR-ERLAGADAMELLFPAELQGRQRMRVVDALRNSDPRID 272

Query: 388 ----------RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
                      +D +       L   +   E+ +           +          E E 
Sbjct: 273 GPLRLELEAVHADGSRFPVEVSLAAARVEGEDIIVALMRDISARRRA---------EREL 323

Query: 438 VDTRINKRKMEIEVMQLCSILEA 460
            + R      E       +++  
Sbjct: 324 TEARDRALAGEQTKADFLAVMSH 346



 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/265 (6%), Positives = 56/265 (21%), Gaps = 15/265 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID--PNNHIGDLLKRQNTWYGK 146
            D    + + +       G+   ++ G    ++     +       + D L+  +     
Sbjct: 214 TDWSARVIDCNRAALAIFGHQRERLAGADAMELLFPAELQGRQRMRVVDALRNSDPRIDG 273

Query: 147 TTLWPIE---GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                +E         P++++         +        ++                  +
Sbjct: 274 PLRLELEAVHADGSRFPVEVSLAAARVEGEDII----VALMRDISARRRAERELTEARDR 329

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE------ 257
                + K    +V   +              +        +           E      
Sbjct: 330 ALAGEQTKADFLAVMSHEMRTPLNGLAGSLELLAQTPLDPRQRELVSVLRASAEILLDHV 389

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
              L  +   + P   +    +L++  +          +              +     E
Sbjct: 390 NSVLDIARSEARPSVAEMVDFDLDRLIEDCIANQSGFAAVVGNRIDHRPLTGPVGILNGE 449

Query: 318 GENLTPETVDKCPIPFFVYSHGNLF 342
            + L    ++          +G + 
Sbjct: 450 PQRLRQVLLNLLNNAVKFTRNGRII 474


>gi|323499281|ref|ZP_08104258.1| hypothetical protein VISI1226_03645 [Vibrio sinaloensis DSM 21326]
 gi|323315669|gb|EGA68703.1| hypothetical protein VISI1226_03645 [Vibrio sinaloensis DSM 21326]
          Length = 872

 Score =  293 bits (750), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 83/255 (32%), Positives = 140/255 (54%), Gaps = 6/255 (2%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I++ K  +  L  AK+ AE  +  KS FLA +SHEIRTPL  IIG +E++ +        
Sbjct: 357 IAKQKAYEQDLVKAKEHAEAANQAKSIFLANMSHEIRTPLNGIIGMTEILADSHLSAA-- 414

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
               +  N +D S + +L ++ND+LD+SKIESG + L     S+ E + + +++V  +A 
Sbjct: 415 --QKDILNDVDASSHALLVLINDILDLSKIESGNLALSPHMASVREIIFDTVNMVNSHAL 472

Query: 681 EKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
           ++ + +   FA+++P  +  D   VKQ+ +N++SNAI F+P G  +I+  +   +  + +
Sbjct: 473 KQEVTLHVEFADHVPNHLELDEFRVKQVLMNLMSNAIKFSPQG-NVIMRVSVVEHHGLSI 531

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V DTGVG+   +L +  KPF Q   +   R  GTGLGL +   +VD   G+  + S   
Sbjct: 532 EVADTGVGIAEDKLAEIFKPFTQEDGTITRRFGGTGLGLTICNQLVDLMNGQISVESGLG 591

Query: 800 KGTLIEIIFPLYDTS 814
           +G+      P+ +  
Sbjct: 592 EGSRFTFTLPMVEPE 606


>gi|269960017|ref|ZP_06174394.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269835316|gb|EEZ89398.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 1200

 Score =  293 bits (750), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 92/398 (23%), Positives = 164/398 (41%), Gaps = 28/398 (7%)

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQ-LCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
           + + G     +  +  + K+     + L S+L+     I I +     +  N+    +  
Sbjct: 518 ILRTGHLTRKIKRKEYETKVRQRQNRWLSSVLDHIPHKILISDDNHQQILANKPYLSMLQ 577

Query: 487 YPVEDILRKP-----FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
               D               +     V +  +T + SL  +    +       E      
Sbjct: 578 RCNTDSNITDEQRELVLKLTKDTDYPVPDEIVTTLCSLGKKHYRVRRQSLLHPE------ 631

Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
                    +  +     DI+E K+++  L  +   A +    +  FLA +SHE+RTP+ 
Sbjct: 632 -------EGTRFHMTVFDDITELKKKECALKASNLKAMQAIEAREHFLAVISHELRTPIA 684

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           A++G  E+++      L  P   E       S   +   VND+LD SK+++ ++ L    
Sbjct: 685 AMLGLMELLEQD----LDRPESKELLKSAMLSAERLQLHVNDILDFSKVDANQLQLDVHS 740

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTP 720
            ++ E +  ++   +    +K +    ++       +  D   V QI  N+LSNA+ FT 
Sbjct: 741 GNVYEELGSSLRSFEKAVEQKALAFEVNWQPTPYALVNLDWLRVNQIINNLLSNAVKFTD 800

Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
            G +I ++    +N E++  V DTG GM+  +L+   +PF Q   S   R  GTGLG+ +
Sbjct: 801 KG-KISVNIHVCAN-ELVFSVHDTGCGMSKAQLDALFQPFVQGDKSISRRFGGTGLGMSI 858

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
            K +VD   G   + S   KGT I +  P+  TS P D
Sbjct: 859 VKKLVDIMTGTIEVSSKQGKGTEITVRLPM--TSQPLD 894


>gi|330828385|ref|YP_004391337.1| two-component system hybrid sensor histidine kinase/response
           regulator [Aeromonas veronii B565]
 gi|328803521|gb|AEB48720.1| Two-component system hybrid sensor histidine kinase/response
           regulator [Aeromonas veronii B565]
          Length = 905

 Score =  293 bits (750), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 95/355 (26%), Positives = 163/355 (45%), Gaps = 23/355 (6%)

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
           A S LFG+ +   + +P T  +       ++      L   +   L             +
Sbjct: 187 AFSTLFGFRLVKSVTQPITNMV-----QAVHKIREGRLDTRVSGQLTGELDMLKNGINAM 241

Query: 540 SLRIIIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHE 595
           +  +                D+ E  ++      +L  AKK A++ +  KS+FLA +SHE
Sbjct: 242 AKALSEYHEEMQQNIDQATSDLRETLEQIEIQNVELDMAKKRAQEAARVKSEFLANMSHE 301

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           +RTPL  +IGF+  +      P       +Y   I++S   +L I+ND+LD SK+E+GK+
Sbjct: 302 LRTPLNGVIGFTRQLLKTSLTP----SQTDYMQTIEKSARNLLGIINDILDFSKLEAGKL 357

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSN 714
            L   P SL + ++E + L+   A++K++ +      ++P  +  D   ++Q+  N+  N
Sbjct: 358 QLEHIPFSLRDTLNETMHLLGPSAHDKQLELSLRVDADVPDYLTGDPMRLQQVLTNLTGN 417

Query: 715 AIHFTPSGGQ-IIISTTHTSNEEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           AI FT  G   + I  T + N +V L  ++RDTG+G++  +  +  + F Q  +S   R 
Sbjct: 418 AIKFTEQGNVDVHIEQTGSGNHKVRLNVQIRDTGIGISQEQQHQLFQAFNQADSSISRRY 477

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF-----PLYDTSH-PHDCI 820
            GTGLGL + + +V    G+    S   KG++          PL  T   P D I
Sbjct: 478 GGTGLGLVITQKLVQQMGGQIRFESELGKGSIFSFSLDVEVSPLPQTDQLPLDRI 532


>gi|298492942|ref|YP_003723119.1| integral membrane sensor signal transduction histidine kinase
           ['Nostoc azollae' 0708]
 gi|298234860|gb|ADI65996.1| integral membrane sensor signal transduction histidine kinase
           ['Nostoc azollae' 0708]
          Length = 574

 Score =  293 bits (750), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 80/279 (28%), Positives = 133/279 (47%), Gaps = 15/279 (5%)

Query: 544 IIKKLPFSSCYSL-----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
                              +  +SE  +   +L  AK++AE  S  KS FLA VSHE+RT
Sbjct: 295 APITTDDEIGLLAKSLNRLIERVSERTR---QLQQAKELAEAASKAKSQFLANVSHELRT 351

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
           PL A+IG S+++K+       +P +I     I+ +G  +L+++ND+LD+SKIE+GKM L+
Sbjct: 352 PLNAVIGLSQLLKDDAVDIGASPDFITDLETINSAGRHLLELINDILDVSKIEAGKMTLY 411

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718
            E   +   ++  +  V+    +    +       +  + AD   ++Q+ LN+LSNA  F
Sbjct: 412 PETFDIITLINNVVLTVKPAIEKNGNTLVLECDEYLGTMYADQTRMRQVLLNLLSNAAKF 471

Query: 719 TPSGGQI-------IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           T +G           I         +I  V D G+GM+  + +K  +PF Q   S   + 
Sbjct: 472 TTNGKVTLTVKIDKTIILKEAPFGSIIFTVTDNGIGMSPSQEQKLFQPFIQGDISTTKKY 531

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            GTGLGL +++       G+  + S    G+  ++  PL
Sbjct: 532 GGTGLGLAISRHFCQMMGGEILVNSQLGVGSNFKVSLPL 570


>gi|152993487|ref|YP_001359208.1| two-component sensor histidine kinase/response regulator
           [Sulfurovum sp. NBC37-1]
 gi|151425348|dbj|BAF72851.1| two-component sensor histidine kinase/response regulator
           [Sulfurovum sp. NBC37-1]
          Length = 1065

 Score =  293 bits (750), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 80/251 (31%), Positives = 125/251 (49%), Gaps = 10/251 (3%)

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
                 K IA + +  KS FLA +SHEIRTPL  I+GF+E++++       N    E+ +
Sbjct: 399 ETAKEDKLIALQANEAKSLFLANMSHEIRTPLNGIVGFTEILRSTDL----NDEQREFLS 454

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            ID+S   +L I+N++LD+SKIES  + +        E    A+    + A EK I +  
Sbjct: 455 IIDKSSENLLSIINNILDLSKIESNNIEIENVVFDAAEEFESAVETYAVGAAEKNIDLNF 514

Query: 689 SFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-----VILRVR 742
                I P++  D   +K+I +N+LSNAI FT  GG++ +      +E+     +   V+
Sbjct: 515 YMDPTINPKLKGDPTKIKEILINLLSNAIKFTSYGGEVNLEIHQVQDEDDRMPRIKFSVQ 574

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G+GMT  + E+    F Q   S   +  GTGLGL ++   V+   GK  + S   +GT
Sbjct: 575 DNGIGMTQDQQERIFDAFSQADVSVTRKYGGTGLGLTISSQFVELMGGKLELESAKDQGT 634

Query: 803 LIEIIFPLYDT 813
                 P  + 
Sbjct: 635 TFFFTIPFEEV 645


>gi|148262094|ref|YP_001228800.1| multi-sensor signal transduction histidine kinase [Geobacter
           uraniireducens Rf4]
 gi|146395594|gb|ABQ24227.1| PAS/PAC sensor hybrid histidine kinase [Geobacter uraniireducens
           Rf4]
          Length = 508

 Score =  293 bits (750), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 102/498 (20%), Positives = 212/498 (42%), Gaps = 49/498 (9%)

Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLD--APKLSDNNAIKPVMLYRSDRTCIAASARLH-- 401
            +       +++  I        LLD   P++     ++ V  + SD   +  +A     
Sbjct: 29  KTATARDGVEALAAIAREKFALVLLDIKMPRMDGMQVLERVQSHYSDVAVVMMTAHGSED 88

Query: 402 -TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
             ++  +  +      PF   +   +      +     +    +R+++ E  ++ +IL+ 
Sbjct: 89  IAVEAMKNGAFDYIAKPFSSEDVLQKVKRAIQLNTARQENIRLQRQLDEERQKMEAILQG 148

Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520
            +D +  ++ +G I+++NR   ++ G   E++L  P    L+ + PS        + +  
Sbjct: 149 MADLLLAVDDQGRIITSNRKAEEVLGLKREELLGMPVEEALKADIPSEELPSRVVLRTTQ 208

Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKK 576
               +    L  +     + +      L  +S   +     + DIS  K  + +      
Sbjct: 209 PSLDVTYTMLCGSAN---IPVSSSAAPLTNASGQLIGSVEIIRDISRLKALEQE------ 259

Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
                   K DF++ +SH+++ P+TA++G  ++++  R GP+ N    EY      S   
Sbjct: 260 --------KEDFVSMLSHDLKAPITAVVGSVDLVREGRLGPV-NADQREYLESSMESCAE 310

Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696
           ++++++ LL + K E+GKM LHF+  +  + +   ++     A   +I +  +   N+P 
Sbjct: 311 MVEMIDTLLGVHKFEAGKMLLHFKEEAPHQLIQRTLTRYITVAKRAQIHLFATVDENLPT 370

Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN---------------------- 734
           I AD  +  ++  N++SNA+ FTP GG+I +S     +                      
Sbjct: 371 ISADRATFSRLLGNLISNALKFTPEGGEIEVSAAAIEDISAIKDRIPRQSYPVEKLSGGD 430

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
             + + VRD+GVG+    LE     F Q  N +  +  GTGLGL   + ++DA+ G  + 
Sbjct: 431 RFLQITVRDSGVGIPPEALEGIFDRFVQAKNRRLGKSSGTGLGLTFCRKVMDAHKGYIWA 490

Query: 795 FSTPAKGTLIEIIFPLYD 812
            S   +G+   ++FP+ +
Sbjct: 491 ESVVGQGSSFVMLFPITE 508



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/108 (11%), Positives = 34/108 (31%), Gaps = 4/108 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D  G +   + +  + +G    +++GM + +               +L+        T 
Sbjct: 156 VDDQGRIITSNRKAEEVLGLKREELLGMPVEEALKADIPSEELPSRVVLRTTQPSLDVTY 215

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRAL 196
                  +  +P+  +A P+ + + +  G     I+            
Sbjct: 216 TMLCG--SANIPVSSSAAPLTNASGQLIG--SVEIIRDISRLKALEQE 259


>gi|221369052|ref|YP_002520148.1| Sensor protein [Rhodobacter sphaeroides KD131]
 gi|221162104|gb|ACM03075.1| Sensor protein [Rhodobacter sphaeroides KD131]
          Length = 816

 Score =  293 bits (750), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 115/520 (22%), Positives = 204/520 (39%), Gaps = 32/520 (6%)

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTK 353
             +  +   +++ +  + S            +V        +        A   +     
Sbjct: 38  RETLLTERVVAYASTRTYSHLVSTLPEAWRSSVQGLTDSVILMLDHQSAEAAIDYDADIG 97

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
                   I  GL   L    +S    I     YR     + A AR+          L  
Sbjct: 98  TDPSTAYGIEAGLRHRL--RGISLETFIGAFKGYRDVYLNVTAEARVPAAMREGWLRLLR 155

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
            F    +         + G   +        R +  E  +  +I E+ ++ + +++  G 
Sbjct: 156 GFFDRAEIGICAHWSGELGTL-DHDQLLSVNRALVNEKNKYLTIFESMNNPVLLVDDGGR 214

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
           I + N A ++LF          P +V+                L     +      L   
Sbjct: 215 IENMNFAAARLFLQDA-----LPGSVYYGPEANLRFADLAGFDLEAVKLRGEAGDVLTCI 269

Query: 534 KEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
            E       I  +++   S       +T HD++E ++        ++ AE  +  K+DFL
Sbjct: 270 GER---WYSITAQEMLDVSRKFVGIVVTFHDVTEARRA-------REQAEALARAKTDFL 319

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
           A +SHEIRTP+ +I G +E++K          R   Y + I+RS  ++  IV+D+LD ++
Sbjct: 320 ATMSHEIRTPIHSIGGVTELLKQSELAS----RDRGYVDAIERSTEVLASIVSDVLDYAR 375

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEK---RILIRTSFANNIPRILADLRSVKQ 706
           IESG + L     S+D+ + +   ++Q     K   RI+I  +   ++P +L D   ++Q
Sbjct: 376 IESGLVELEQVDFSIDQILDDVARMMQPLVRRKPQLRIVIERT---DLPPVLGDAGKLRQ 432

Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
           I +N+ SNA+ FTP G  +I +            V DTG G+   +LE+  KP+ Q  +S
Sbjct: 433 ILINLTSNAVKFTPEGTVVIGAERLAGGHRFRFTVSDTGPGIAAEKLEEIFKPYIQSDSS 492

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
              R  GTGLGL + + +     G+  + STP  G+   +
Sbjct: 493 ISRRHGGTGLGLAICRRLAGHLGGRLDVRSTPGFGSRFTL 532


>gi|50120141|ref|YP_049308.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Pectobacterium atrosepticum SCRI1043]
 gi|49610667|emb|CAG74112.1| two-component system sensor protein [Pectobacterium atrosepticum
           SCRI1043]
          Length = 951

 Score =  293 bits (750), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 95/370 (25%), Positives = 154/370 (41%), Gaps = 29/370 (7%)

Query: 446 KMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           ++E        I+ +   GI I+   +G  + +N            +   +     +   
Sbjct: 350 QLEENEQFNRKIVASAPVGICILRINDGTNILSNELAHNYLNLLTHEDRLR--ITRIICK 407

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564
             S     +                   T     L +  +  +    +     + D+S  
Sbjct: 408 QQSKFVDVM-------------------TSRNHHLQISFVHSRYRNENVAICVLLDVSAR 448

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
            + +  L      AE+ S  KS FLA VSHE+RTPL  IIG  ++++ +      N    
Sbjct: 449 VKMEESLQEMANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKSLPKDAN---- 504

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
                ++ S +L+L I++D+LD SKIES ++ +     +  E +S   S       +KR+
Sbjct: 505 RLVVAMNNSSSLLLKIISDILDFSKIESEQLKIEPCEFAPHEVISHITSNYLPLVVKKRL 564

Query: 685 LIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
            +    A N+P  +  D   ++Q+  N+LSNAI FT +G  II          +   VRD
Sbjct: 565 TLYCFIAPNVPVSLFGDPVRLQQVLSNLLSNAIKFTDTG-CIIFEVGCRD-GYLEFVVRD 622

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TGVG+   E  K   PF Q  +  Q   +GTGLGL + + +V+   G   I S P  G+L
Sbjct: 623 TGVGIQPREAVKLFDPFFQAGSGVQRHFQGTGLGLAICEKLVNLMDGDITIESEPGLGSL 682

Query: 804 IEIIFPLYDT 813
             +  PLY  
Sbjct: 683 FGVRIPLYKA 692


>gi|257481808|ref|ZP_05635849.1| sensory box histidine kinase [Pseudomonas syringae pv. tabaci ATCC
           11528]
 gi|331009443|gb|EGH89499.1| sensory box histidine kinase [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 595

 Score =  293 bits (750), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 89/427 (20%), Positives = 172/427 (40%), Gaps = 28/427 (6%)

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK--R 445
            + R      A         E    +T  P   A +      + GI  E +         
Sbjct: 193 IARRFGAPIEALAKAADRIGEGDYEVTL-PISSAAEMNLLTRRFGIMAEALRQHQATNID 251

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           ++     +L ++L++  DG+ +I+R+G +   N    +  G+    + +           
Sbjct: 252 ELLAGQQRLQAVLDSIDDGLLMIDRQGHLEHLNPVAQRQLGWDESRLGQSLGDALGRPEL 311

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISE 563
              ++  L         + L         E +LL+  +              + +HD++E
Sbjct: 312 DEQLHLVLRGGTLERAPEDLAIEI---DGESRLLTYSMTPVSHTKGHILGAVMVLHDVTE 368

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            +  +                +S+F+ R SHE+RTP+T  +  +  +  +R       R 
Sbjct: 369 QRAFE--------------RVRSEFVLRASHELRTPVTG-MHMAFGLLQERLHFAPETRE 413

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            +  N +      ++ ++NDLL+ S+ ++G   L   P S++  + EA +  +  A E+ 
Sbjct: 414 ADLLNTVTEEMQRLMQLINDLLNFSRYQNGLQKLKLAPCSIETLLEEARARFEDKALEQD 473

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
           I++       +PR+ AD   ++++  N+L NA+  TP  G I +       E  I+ V D
Sbjct: 474 IVLMLDMQEPMPRLHADQSQLERVLDNLLDNALRHTPQNGLIRLQ-ARRHGERAIISVED 532

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
            G G+   +  +  +PF Q+      +  G GLGL L K +V  + G+  ++S P +GT 
Sbjct: 533 NGEGIAYGQQGRIFEPFVQV----GRKKGGAGLGLALCKEIVQLHGGRMGVYSRPGQGTQ 588

Query: 804 IEIIFPL 810
             +  PL
Sbjct: 589 FYMALPL 595



 Score = 43.5 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 69/241 (28%), Gaps = 9/241 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G+L+ ++    + +G    + +G  L D      +D       L+ R  T      
Sbjct: 274 IDRQGHLEHLNPVAQRQLGWDESR-LGQSLGDALGRPELDEQ---LHLVLRGGTLERAPE 329

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
              IE       +  +  P+        G     ++H          +  R +      H
Sbjct: 330 DLAIEIDGESRLLTYSMTPVSHTKGHILGA--VMVLHDVTEQRAFERV--RSEFVLRASH 385

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           E++   + +      +  +    P  R  + ++++TE    +   L  +       +   
Sbjct: 386 ELRTPVTGMHMAFGLLQERLHFAPETREADLLNTVTE-EMQRLMQLINDLLNFSRYQNGL 444

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
              +    +I       +  F                   P L A   + E +    +D 
Sbjct: 445 QKLKLAPCSIETLLEEARARFEDKALEQDIVLMLDMQEPMPRLHADQSQLERVLDNLLDN 504

Query: 329 C 329
            
Sbjct: 505 A 505


>gi|154252300|ref|YP_001413124.1| multi-sensor hybrid histidine kinase [Parvibaculum lavamentivorans
           DS-1]
 gi|154156250|gb|ABS63467.1| multi-sensor hybrid histidine kinase [Parvibaculum lavamentivorans
           DS-1]
          Length = 946

 Score =  293 bits (750), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 83/262 (31%), Positives = 128/262 (48%), Gaps = 11/262 (4%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I+E +  K +L  AK  AE  +  KSDFLA +SHEIRTP+  ++G +E++         N
Sbjct: 253 IAELEATKQELIAAKDQAEAGNRAKSDFLANMSHEIRTPMNGVLGMTELLLTTAL----N 308

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
               ++A  +  SG  +L IVND+LD+SK+E+G++ L      L   V  AISL+   A 
Sbjct: 309 AEQRKFAETVRESGEALLTIVNDILDVSKLEAGRLELDHIDFDLVNTVESAISLMAARAA 368

Query: 681 EKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSN---- 734
           EK+I +          I   D   ++Q+ LN++ NAI FT  GG  + +S     +    
Sbjct: 369 EKQIDLGAYIEPAARGIYRGDPARLRQVLLNLIGNAIKFTEKGGVAVRVSVYRVEDPQTK 428

Query: 735 -EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
              +   V DTG+G+      +  + F Q  +S   R  GTGLGL + K +V+   G   
Sbjct: 429 ASHLRFEVHDTGIGIPEDVCGRLFQKFSQADSSVTRRYGGTGLGLAICKQIVELMDGNIG 488

Query: 794 IFSTPAKGTLIEIIFPLYDTSH 815
           + S    G+       L  ++ 
Sbjct: 489 VNSRVGAGSTFWFQLSLVRSAA 510


>gi|150021372|ref|YP_001306726.1| histidine kinase [Thermosipho melanesiensis BI429]
 gi|149793893|gb|ABR31341.1| histidine kinase [Thermosipho melanesiensis BI429]
          Length = 465

 Score =  293 bits (750), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 75/369 (20%), Positives = 152/369 (41%), Gaps = 42/369 (11%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            K++     +  +L + ++GI ++N++G I  TN+   ++                    
Sbjct: 133 EKIKNSEQFMFEVLNSINEGIFVLNKDGEIEFTNKFGKRIL------------------- 173

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564
               +  Y    +S       E             ++            Y +  ++++  
Sbjct: 174 EKEDLEDYFNFFISD------ENNIFTKEFGGNYFTIVKTKFDFLGDEKYIIVFNNVTYE 227

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
            + +          ++    K++F+A +SHE+RTPL+A+  ++E + N    P       
Sbjct: 228 MELEK--------LKQLDKIKTEFVANISHELRTPLSAVKAYTETLLNMEIDP---ESQK 276

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           E+ + I      +  ++NDLLD + I+SG M L +   ++   V + +  +  +A ++ +
Sbjct: 277 EFLSIIYEQSERLESLLNDLLDFTLIDSGSMELEYSKFNICNVVDDVLKKLLSFAQKQDV 336

Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ---IIISTTHTSNEEVILRV 741
            +     +    I AD R + Q+  N++ NAI F         + I      +  +I+ V
Sbjct: 337 KLEKECED--VEISADKRRIFQVIYNLVDNAIKFNDREKPERFVKILVKKLEDI-LIIEV 393

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            D G+G+   E EK  + F +I  S      GTG+GL + K +V  + G   + S   KG
Sbjct: 394 EDNGIGIPKSEQEKIFEKFYKIDRSLTYEVPGTGMGLAIVKEIVRLHGGNIEVESEEKKG 453

Query: 802 TLIEIIFPL 810
           ++  +  P+
Sbjct: 454 SIFRVNIPI 462


>gi|156740839|ref|YP_001430968.1| multi-sensor signal transduction histidine kinase [Roseiflexus
           castenholzii DSM 13941]
 gi|156232167|gb|ABU56950.1| multi-sensor signal transduction histidine kinase [Roseiflexus
           castenholzii DSM 13941]
          Length = 722

 Score =  293 bits (750), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 96/555 (17%), Positives = 207/555 (37%), Gaps = 45/555 (8%)

Query: 273 EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP 332
           E     N  +   ++             E  +              +++  + +D     
Sbjct: 189 ELQRERNTREARVEELEHLANELRMRMRERHALEEGLRAITSTLSLDDVLEQILDSTVQT 248

Query: 333 FFVYSHGNLFY-------ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP-- 383
           F       +          N              +E           P +  ++A+ P  
Sbjct: 249 FGGERTHAVVLTLKTDGSWNNRMYARDGQLQAQWVEPIIRRVMRDQTPAVIADSALDPDL 308

Query: 384 -VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             M     R+ I     +         ++         ++               +    
Sbjct: 309 GEMSKIGLRSIICVPLFVGDGPPRGALTVVSATFAAFSSSDARHLSAFAAQAGIAIGNAE 368

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
              ++  +   L ++L   +DG+ +++ E  ++  N     L     +    +P+   + 
Sbjct: 369 LHSQLRRQQHLLQAVLRDINDGLVVLDTENNVVLANPVGQALLD---DQTASQPWLERMR 425

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SLTM 558
           +    + +             + E I      EE  +  + +  ++  +       ++ +
Sbjct: 426 ELASRLSDD-------GRPVASPEWIVGDPECEEGCIVYQAVASRVRMNDDLPNLTAIVL 478

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
           HDI++ K E+                + DF++ VSHE+R PL  + GF +++   R GPL
Sbjct: 479 HDITDHKAEE--------------RARMDFISMVSHELRNPLHTLNGFVKLVLQGRAGPL 524

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
                 ++ +  D     +   V++LL+ ++ ++G++ LH +   L   ++  +S + L 
Sbjct: 525 T-ALQKDFLSMADEQIEQLSGRVSELLEYNRFKAGRLALHPDVGDLSLLIAGTVSRLSLQ 583

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738
           A ++++ +     + +P    D + + Q+  N++ NA+  TP+GG I IS       EV 
Sbjct: 584 AEQQQLSLVNETPH-LPLCRFDNQRIGQVLTNLIENAMKATPAGGTIKISADVHDQ-EVW 641

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT--GLGLPLAKAMVDANMGKFYIFS 796
           +RV DTG+G+ + EL K  + F Q+  ++  R +GT  GLGL + + +V+ + G+ ++ S
Sbjct: 642 VRVSDTGIGIPSSELGKIFQRFYQV--AKHRRAQGTHMGLGLAICQQIVEGHGGRIWVES 699

Query: 797 TPAKGTLIEIIFPLY 811
               GT      PL 
Sbjct: 700 EEGVGTTFTFTLPLA 714


>gi|71733915|ref|YP_272558.1| sensory box histidine kinase [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|71554468|gb|AAZ33679.1| sensory box histidine kinase [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|330986816|gb|EGH84919.1| sensory box histidine kinase [Pseudomonas syringae pv. lachrymans
           str. M301315]
          Length = 595

 Score =  293 bits (750), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 89/427 (20%), Positives = 172/427 (40%), Gaps = 28/427 (6%)

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK--R 445
            + R      A         E    +T  P   A +      + GI  E +         
Sbjct: 193 IARRFGAPIEALAKAADRIGEGDYEVTL-PISSAAEMNLLTRRFGIMAEALRQHQATNID 251

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           ++     +L ++L++  DG+ +I+R+G +   N    +  G+    + +           
Sbjct: 252 ELLAGQQRLQAVLDSIDDGLLMIDRQGHLEHLNPVAQRQLGWDESRLGQSLGDALGRPEL 311

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISE 563
              ++  L         + L         E +LL+  +              + +HD++E
Sbjct: 312 DEQLHLVLRGGTLERAPEDLAIEI---DGESRLLTYSMTPVSHTKGHILGAVMVLHDVTE 368

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            +  +                +S+F+ R SHE+RTP+T  +  +  +  +R       R 
Sbjct: 369 QRAFE--------------RVRSEFVLRASHELRTPVTG-MHMAFGLLQERLHFAPETRE 413

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            +  N +      ++ ++NDLL+ S+ ++G   L   P S++  + EA +  +  A E+ 
Sbjct: 414 ADLLNTVTEEMQRLMQLINDLLNFSRYQNGLQKLKLAPCSIETLLEEARARFEDKALEQD 473

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
           I++       +PR+ AD   ++++  N+L NA+  TP  G I +       E  I+ V D
Sbjct: 474 IVLMLDMQEPMPRLHADQSQLERVLDNLLDNALRHTPQNGLIRLQ-ARRHGERAIISVED 532

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
            G G+   +  +  +PF Q+      +  G GLGL L K +V  + G+  ++S P +GT 
Sbjct: 533 NGEGIAYGQQGRIFEPFVQV----GRKKGGAGLGLALCKEIVQLHGGRMGVYSRPGQGTQ 588

Query: 804 IEIIFPL 810
             +  PL
Sbjct: 589 FYMALPL 595



 Score = 43.5 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 69/241 (28%), Gaps = 9/241 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G+L+ ++    + +G    + +G  L D      +D       L+ R  T      
Sbjct: 274 IDRQGHLEHLNPVAQRQLGWDESR-LGQSLGDALGRPELDEQ---LHLVLRGGTLERAPE 329

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
              IE       +  +  P+        G     ++H          +  R +      H
Sbjct: 330 DLAIEIDGESRLLTYSMTPVSHTKGHILGA--VMVLHDVTEQRAFERV--RSEFVLRASH 385

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           E++   + +      +  +    P  R  + ++++TE    +   L  +       +   
Sbjct: 386 ELRTPVTGMHMAFGLLQERLHFAPETREADLLNTVTE-EMQRLMQLINDLLNFSRYQNGL 444

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
              +    +I       +  F                   P L A   + E +    +D 
Sbjct: 445 QKLKLAPCSIETLLEEARARFEDKALEQDIVLMLDMQEPMPRLHADQSQLERVLDNLLDN 504

Query: 329 C 329
            
Sbjct: 505 A 505


>gi|312126308|ref|YP_003991182.1| multi-sensor signal transduction histidine kinase
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311776327|gb|ADQ05813.1| multi-sensor signal transduction histidine kinase
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 566

 Score =  293 bits (750), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 76/374 (20%), Positives = 152/374 (40%), Gaps = 58/374 (15%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            ++E E  +L  IL+  SDG+  +N +  I+  N +  K                     
Sbjct: 239 SELEFEKQKLERILQNMSDGVLAVNSKNEIIHINESAKKFL------------------- 279

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-CYSLTMHDISE 563
               +  +L  + S       + I      +   L +        +        +HDI++
Sbjct: 280 -KGDVERFLEHVQSDKDWGVTQHIYEV---DGWTLEISTAAFIDSYQGTGTIFILHDITQ 335

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             +                  +  F+A VSHE+RTP+T I  +SE + +           
Sbjct: 336 QAKL--------------DQMRKQFVADVSHELRTPITTIKTYSETLLD----VDDEAVK 377

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            E+   I +  + +  +++DLL +S+++SG+  L  E V++ E V      ++++A +K 
Sbjct: 378 REFLGVIIKECDRMTRLISDLLYLSRLDSGENILKIEEVNVSELVRFVCEKMRIHAKKKN 437

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
             +  S   N+  I AD   ++Q+ +N+++NA+ +   GGQI +       E V + V+D
Sbjct: 438 QKLLCSAEENV-VIEADRDRLEQVLINLINNAVVYVQEGGQIEVGLE-KDEEHVKITVKD 495

Query: 744 TGVGMTNYELEKAMKPFGQIPNS-------QQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
            G G+   +L +  + F ++  +         +          +A  +V A+ G+  + S
Sbjct: 496 NGPGIPEDDLPRIFERFYRVDKARSRSLGGSGLGLS-------IADEIVKAHGGRILVES 548

Query: 797 TPAKGTLIEIIFPL 810
               GT   ++ P+
Sbjct: 549 KEGVGTTFTVVLPV 562


>gi|258593750|emb|CBE70091.1| putative Histidine kinase [NC10 bacterium 'Dutch sediment']
          Length = 627

 Score =  293 bits (750), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 102/335 (30%), Positives = 160/335 (47%), Gaps = 35/335 (10%)

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN------- 569
           L   L+  +  +  G       ++L I +              DI+  +Q +        
Sbjct: 290 LEGALQARIGALRNGQDTTIGFIALVIAVAVWLGIVIVRAIKQDIATLQQSEEVQRRHAG 349

Query: 570 -----------KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
                      +L       E  S HKS+FL  +SHE+RTPL AI+GFSE+++N   G L
Sbjct: 350 ELEAVVDERTRELRAVNAQLEAASRHKSEFLTHMSHELRTPLNAILGFSELLRNPAIGSL 409

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
            N +   +  +I   G  +L I NDLLD++K+E+GK+ LH EP  +D+A+  A++ ++  
Sbjct: 410 -NEQQARHLTHIQAGGKHLLVITNDLLDLAKVEAGKLQLHPEPFDIDKAILAALADIRPL 468

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST--------- 729
           A++K + +       +  + AD    KQI  N+LSNAI FTP GG+I ++          
Sbjct: 469 ADQKHLTLTLHADTALVPLTADPLRFKQIIYNLLSNAIKFTPEGGRITVTAHIGSSEGAR 528

Query: 730 ------THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
                 T    E V + V DTG+G+T   L +  +PF Q+  +   +  GTGLGL L K 
Sbjct: 529 LNPIPDTLYPGEFVEIAVADTGIGITAENLSRLFQPFTQLDPTLAKQYHGTGLGLALTKQ 588

Query: 784 MVDANMGKFYIFS-TPAKGTLIEIIFPLYDTSHPH 817
           +V+ + G+ +  S     G+   I FPL   + P 
Sbjct: 589 LVELHGGRIWAASDGAGCGSCFTICFPLTPPARPE 623


>gi|307718246|ref|YP_003873778.1| phosphate regulon sensor protein PhoR [Spirochaeta thermophila DSM
           6192]
 gi|306531971|gb|ADN01505.1| phosphate regulon sensor protein PhoR [Spirochaeta thermophila DSM
           6192]
          Length = 463

 Score =  293 bits (750), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 78/371 (21%), Positives = 148/371 (39%), Gaps = 25/371 (6%)

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
            T    + +  E     ++L    +GI + +    I   N    ++   P E        
Sbjct: 117 QTHTRLQDLTAESHLYHTVLTHMEEGIVVTDGRLRITYANPRALEILSLPPE----HRLK 172

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM 558
              +    + +  ++   LS     T    T   +   + + L +I      S    L  
Sbjct: 173 PLPQFLRSTSLLEHIHRTLSSGTPLTHTLTTPPPSS--RTIRLHLIPLPPSPSERLLLVA 230

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            DI+  ++ +                + DF++ VSHE++TP+T ++G+ E +K+    P 
Sbjct: 231 SDITRLERLE--------------QIRRDFVSSVSHELKTPITTVLGYLETLKD--LPPD 274

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
                  +        + +  I+ DLL +S+IE  +  +  E   L   +  A+ LV+  
Sbjct: 275 DEATRTRFLETALSHTHRLHQIIEDLLLLSRIEQAEAPVPLERAPLAPLIRRAVELVR-Q 333

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738
           A  +   +      ++  +  +   + Q   N++ NA+  TP G  +++    T    V+
Sbjct: 334 ARGETHPLTLEGPEDL-ALPLNPGLMVQALYNLIHNALTHTPPGTPVVVRWRST-GSSVL 391

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           ++V D G G+    L +  + F ++  S+     GTGLGL + K +V A+ G   + STP
Sbjct: 392 IQVEDRGPGIPPEALPRIFERFYRVDTSRSRATGGTGLGLSIVKHIVQAHKGTIDVHSTP 451

Query: 799 AKGTLIEIIFP 809
             GT   I  P
Sbjct: 452 GHGTTFTIRLP 462


>gi|171320502|ref|ZP_02909531.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ambifaria
           MEX-5]
 gi|171094265|gb|EDT39343.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ambifaria
           MEX-5]
          Length = 734

 Score =  293 bits (750), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 109/574 (18%), Positives = 203/574 (35%), Gaps = 27/574 (4%)

Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
             D+ L +E          +          +      ++           + + +   + 
Sbjct: 11  ESDEQLVSEVASFAADALRNGGSAIVIARADRLAAVHERLDALDPAIGDAARDRIFMSSA 70

Query: 309 PSLSAYFDEGENLTPETVDKC--PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
            +L   F +G+   P        PI       G   +A    + L    + D    A  L
Sbjct: 71  QALLDSFMDGDLPDPARFRHSIGPIVEAAVRAGRPVHAFGEMVSLL--CAQDRYAGALRL 128

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
             L D        ++     + +  +   +    H    +R    A +    E       
Sbjct: 129 EALWDELIARYRFSLYCGYSHDAFPSAEQSEMFRHVCTLHRRILPAASLRNDENELHLTL 188

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLF 485
            + Q        D    +   E +      +L      IA++   E  I+  N   S L 
Sbjct: 189 ALSQQ-RSRALSDEIRRREDAEQQRN---GVLMHAPLPIALLSGPEHRIVLANHRFSALC 244

Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE--KLLSLRI 543
           G    DI+ +P T  L       +   L          T+ +       ++  ++  L  
Sbjct: 245 G--RTDIVDQPLTSVLPGGDTPAIVRALETAREQGCSTTIREHHDRPEPDDGARVYRLHF 302

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK-------ESSHKSDFLARVSHEI 596
             + L       ++  +++E    + KL  A    ++        +  K  FLA + HE+
Sbjct: 303 NPQPLAEGLGVIVSAVEVTEHVAAREKLVAANAERDRLLGELRDANQAKDQFLAVLGHEL 362

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           R PLT I    E+I+N+      N         I R  + ++ +++DLLD+S+I  GK+ 
Sbjct: 363 RNPLTPISLALELIRNRDGQATPNE-----IAIIQRQLDHMVRLIDDLLDVSRITRGKIT 417

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716
           L  E + L + V  A+ +      ++R  +      +      D   + Q+  N+L+NA 
Sbjct: 418 LKKEALRLADIVDRAVEVASPLLEQRRHRLHVDADPDAC-CHGDPVRLSQVVANLLTNAA 476

Query: 717 HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
            +T  GG I +  TH ++   I+ V D G G+    L+   +PF ++    +    G G+
Sbjct: 477 KYTMPGGDITVRATHGADGAAIIEVCDNGAGIPPDRLDSIFEPFYRLDGETKQAHGGLGI 536

Query: 777 GLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFP 809
           GL L +++V+ + G     S  P  G+   I  P
Sbjct: 537 GLALVRSLVNLHGGTVRADSAGPGCGSTFTIALP 570



 Score = 39.6 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 31/307 (10%), Positives = 65/307 (21%), Gaps = 24/307 (7%)

Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA 248
              DP      +           +   +  +    + +Q      LR++     L   Y 
Sbjct: 81  DLPDPARFRHSIGPIVEAAVRAGRPVHAFGEMVSLLCAQDRYAGALRLEALWDELIARYR 140

Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
                  +        +          H   L   + +     L      S +     + 
Sbjct: 141 FSLYCGYSHDAFPSAEQSEMFRHVCTLHRRILPAASLRNDENELHLTLALSQQRSRALSD 200

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
                   E +          PI         +  AN  F  L     + D  +   L  
Sbjct: 201 EIRRREDAEQQRNGVLMHAPLPIALLSGPEHRIVLANHRFSALCGRTDIVDQPLTSVL-- 258

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAA-SARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
               P       ++ +   R                  +      + F P        E 
Sbjct: 259 ----PGGDTPAIVRALETAREQGCSTTIREHHDRPEPDDGARVYRLHFNPQP----LAEG 310

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
           +       E  +    + K+     +   +L             G +   N+A  +    
Sbjct: 311 LGVIVSAVEVTEHVAAREKLVAANAERDRLL-------------GELRDANQAKDQFLAV 357

Query: 488 PVEDILR 494
              ++  
Sbjct: 358 LGHELRN 364


>gi|282899300|ref|ZP_06307269.1| Multi-sensor Signal Transduction Histidine Kinase
           [Cylindrospermopsis raciborskii CS-505]
 gi|281195757|gb|EFA70685.1| Multi-sensor Signal Transduction Histidine Kinase
           [Cylindrospermopsis raciborskii CS-505]
          Length = 315

 Score =  293 bits (750), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 85/332 (25%), Positives = 151/332 (45%), Gaps = 22/332 (6%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           + GY   D+L K  T                + LS       +          K++ + +
Sbjct: 1   MLGYNSRDLLTKNVTELTIGEELPKDFDLAHQFLS-GQISNYQPKKSCLHISGKIIWVLL 59

Query: 544 IIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
            +  L   +     +   + DISE  + +                K++F++ VSHE+RTP
Sbjct: 60  NVSLLFDVNRNPLYFIWQIQDISERHEVE--------------QLKNEFVSVVSHEVRTP 105

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           LTAI G  E++              +       +   +L +VN++L++  ++SGKM L+ 
Sbjct: 106 LTAIKGALEILATGILVDEPQE-AEQMLKIGVSNSERLLRLVNNILNLEMLDSGKMRLNL 164

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTS-FANNIPRILADLRSVKQIALNILSNAIHF 718
           +   ++  V +A+  V+  A +  I I  +        ILAD  ++ Q+  N+LSN+I F
Sbjct: 165 KLCDINIMVKQAMETVRPIAQQNSIEISYNTLDVPNTEILADEETIVQVLTNLLSNSIKF 224

Query: 719 TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
           + SG ++ I  T + N+E+I+ V+D G G+  ++LE   + F Q+  S   +  GTGLGL
Sbjct: 225 SHSGNKVEIYATVS-NKEIIVAVKDYGKGVPPHKLETIFERFEQVDVSDSRQKGGTGLGL 283

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            + K +V+ + GK ++ S    G+      PL
Sbjct: 284 AICKNIVEKHQGKIWVESILGSGSTFYFTLPL 315


>gi|86144427|ref|ZP_01062759.1| Signal transduction histidine kinase [Vibrio sp. MED222]
 gi|85837326|gb|EAQ55438.1| Signal transduction histidine kinase [Vibrio sp. MED222]
          Length = 857

 Score =  293 bits (750), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 85/380 (22%), Positives = 170/380 (44%), Gaps = 25/380 (6%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            ++  +  +   +       I + + +G ++  N A  ++  +  +D         + + 
Sbjct: 349 ERLSEQHQKFQDLFNFAHSPILVWSEKGDLIQMNPAA-RMALFDEDDNYG-----AMARE 402

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISE 563
               M   +  ++       +          EK+    +   ++    +   +   DI++
Sbjct: 403 FELRMLPNIQMVVQGSKLTGINVPI-----GEKVFRWNMSAIRVEHGITGVVVQGQDITK 457

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + + +   A++ AE  +S ++DFLA++SHEIRTPL  I+G S+++K      + +   
Sbjct: 458 LIEAERQADRAREEAEHLASVRADFLAKMSHEIRTPLNGILGVSQLLKR----SIHDEDN 513

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            +  + +  S   +L ++ND+LD SKIE G+ N+  +   L E V+   S+ +    +K 
Sbjct: 514 RDQVDVLCHSAEHLLAVLNDILDFSKIEQGQFNIQKKDFLLGELVNTLDSIYRPLCEDKS 573

Query: 684 ILIRT--SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-----SNEE 736
           +         ++I +I  D   + QI  N+LSNA+ FT  G  I +S             
Sbjct: 574 VEFTIVNHLVDDI-KIHTDQVRLNQIMFNLLSNALKFTHQGS-ISVSFEIESILNTDYAS 631

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           +I+RV+D+G+G+   +++   +PF Q   +      G+GLGL + K +VD   G   + S
Sbjct: 632 LIVRVKDSGIGIDESKIDAIFEPFVQAEETTTREYGGSGLGLTIVKNLVDMLEGDIQVRS 691

Query: 797 TPAKGTLIEIIFPLYDTSHP 816
              +G+   +  P+   S P
Sbjct: 692 VKDQGSEFIVEIPVELHSKP 711


>gi|331683896|ref|ZP_08384492.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           H299]
 gi|331078848|gb|EGI50050.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           H299]
          Length = 608

 Score =  293 bits (750), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 88/371 (23%), Positives = 172/371 (46%), Gaps = 28/371 (7%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            + +         I+E  +DG+  I+R+G + + N A   + GY   +++ +P+++  + 
Sbjct: 254 AQALRETRTLNDLIIENAADGVIAIDRQGDVTTMNPAAEVITGYQRHELVGQPYSMLFDH 313

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMH 559
                    L  +        LE    G     + + L +   ++  +        +   
Sbjct: 314 TQFYS--PVLDTLEHGTEHVALEISFPGRD---RTIELSVTTSRIHNTHGDMIGALVIFS 368

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           D++  K+ + +++ A+++A        + +A V+HE+R PLTAI G+ ++++ Q     G
Sbjct: 369 DLTARKETQRRMAQAERLAT-----LGELMAGVAHEVRNPLTAIRGYVQILRQQ----TG 419

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
           +P + EY + + +  + +  ++  LL+ S+    +    ++ VSL+  V E + LVQ   
Sbjct: 420 DPIHQEYLSVVLKEIDSINKVIQQLLEFSRPRHSQ----WQQVSLNALVEETLVLVQTAG 475

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
            + RI   +   N +  I AD   +KQ+ LNIL NA+    + G+I I T   S+ +  +
Sbjct: 476 VQARIDFISELDNELSPINADRELLKQVLLNILINAVQAISARGKIRIRTWQYSDSQQAI 535

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            + D G G+     +K   PF     S      GTGLGL L++ +++A+ G   + S P 
Sbjct: 536 SIEDNGCGIDLSLQKKIFDPFFTTKAS------GTGLGLALSQRIINAHQGDIRVASLPG 589

Query: 800 KGTLIEIIFPL 810
            G    +I P+
Sbjct: 590 YGATFTLILPI 600



 Score = 39.6 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 21/272 (7%), Positives = 67/272 (24%), Gaps = 17/272 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G +  ++       G    +++G     + D       + + D L+          
Sbjct: 278 IDRQGDVTTMNPAAEVITGYQRHELVGQPYSMLFDHTQF--YSPVLDTLEHGTEHVALEI 335

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
            +P     + + +  +   I++ + +  G     I        + +    + ++  +   
Sbjct: 336 SFPGRDRTIELSVTTS--RIHNTHGDMIGA--LVIFSDLTARKETQRRMAQAERLATL-- 389

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
                    E         ++P   +R   ++           + L      + +  +  
Sbjct: 390 --------GELMAGVAHEVRNPLTAIRGYVQILRQQTGDPIHQEYLSVVLKEIDSINKVI 441

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE-NLTPETVD 327
               E     +             +         +  R         +    N   E + 
Sbjct: 442 QQLLEFSRPRHSQWQQVSLNALVEETLVLVQTAGVQARIDFISELDNELSPINADRELLK 501

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDD 359
           +  +   + +   +       +   +Y     
Sbjct: 502 QVLLNILINAVQAISARGKIRIRTWQYSDSQQ 533


>gi|261407510|ref|YP_003243751.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           sp. Y412MC10]
 gi|261283973|gb|ACX65944.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           sp. Y412MC10]
          Length = 480

 Score =  293 bits (750), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 94/493 (19%), Positives = 192/493 (38%), Gaps = 36/493 (7%)

Query: 326 VDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
            ++  I    V   G +   N +   L  Y   +    A      L      +       
Sbjct: 13  FEQSVIGMALVSLDGTILKVNSALCDLLGYSPQELTAGAPQEENSL-----RELLNRVIQ 67

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
               +     +     +  +   +  L ++       +             +    R   
Sbjct: 68  NARAAQGHQPSVPPVEYAYRHPSDRELYLSARCSVDHDPERGPKGYLVQFEDRTLLRQLM 127

Query: 445 RKMEIEVMQLC-------SILEATSDGIAIINREGIILSTNRAVSKLFG-YPVEDILRKP 496
           +++E +  +L         +LE     + I  ++GI+   N A  +L     + D+L   
Sbjct: 128 KQLEQKEQKLNEKENSFLQLLEELPLSVLIT-KKGIVHYVNSAALRLVNAMHLRDVLGIS 186

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556
             V ++ +    +              +++ +      +EK+++   +I +         
Sbjct: 187 TDVIVDASYHHTLMKRRATYAESGEIGSVDYLIRCLDGQEKMVTGFTLIIQYEGEKAAVG 246

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
              DI+E + E++++  ++K+            A ++HEIR PLT+I GF +++++    
Sbjct: 247 IFKDITEQRMEEDRVMQSEKLTTA-----GQLAAGIAHEIRNPLTSINGFVKLLRSAERS 301

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
                    Y   I+     +  IVN+LL +SK +   ++    P+ +   + + I+L++
Sbjct: 302 NEL------YFEIIESELKRIELIVNELLVLSKPQGAHVS---GPIDVSAILDQIITLMK 352

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
           + A  K I I   +      +  ++  +KQ+ +N+L NA+     GG I +   H+   E
Sbjct: 353 VQAALKNIEIIPHYPLVPIYVQGEVNQLKQVFINLLKNAMEAMNDGGSITLDIVHS-GPE 411

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           V + V+D GVGMT  +++   +PF    ++      GTGLGL + K ++  + G   + S
Sbjct: 412 VQIIVQDEGVGMTQDQIQSLGQPFFTTKDT------GTGLGLMITKNIIHNHGGTMNVES 465

Query: 797 TPAKGTLIEIIFP 809
           TP  GT   I  P
Sbjct: 466 TPDHGTTFTIHLP 478



 Score = 40.4 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 28/263 (10%), Positives = 72/263 (27%), Gaps = 24/263 (9%)

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
             L  +      V     D+              + +SL E         +  +    + 
Sbjct: 20  MALVSLDGTILKVNSALCDLLGYSPQELTAGAPQEENSLRELLNRVIQNARAAQGHQPSV 79

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL-----------SA 313
                P +  +   +  +           +  +    YL      +L             
Sbjct: 80  P----PVEYAYRHPSDRELYLSARCSVDHDPERGPKGYLVQFEDRTLLRQLMKQLEQKEQ 135

Query: 314 YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
             +E EN   + +++ P+   +   G + Y N + L L     + D+        ++DA 
Sbjct: 136 KLNEKENSFLQLLEELPLSVLITKKGIVHYVNSAALRLVNAMHLRDVLGI-STDVIVDAS 194

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
                   +       +   +    R      + +  +   F    +           GI
Sbjct: 195 YHHTLMKRRATYAESGEIGSVDYLIRC----LDGQEKMVTGFTLIIQYEGE---KAAVGI 247

Query: 434 EPEDVDTRINKRKMEIEVMQLCS 456
             +  + R+ + ++ ++  +L +
Sbjct: 248 FKDITEQRMEEDRV-MQSEKLTT 269


>gi|300868716|ref|ZP_07113327.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300333277|emb|CBN58519.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 820

 Score =  293 bits (750), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 130/803 (16%), Positives = 258/803 (32%), Gaps = 55/803 (6%)

Query: 34  FETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHG 93
            E E++       +SF  ++F +Q     S     DS+  F  + +P  V   W  D   
Sbjct: 44  LEKERTAAAKELSNSF--TSFKNQRHRVESLLKRADSQLEFHLENLPLAV-LEW--DRQ- 97

Query: 94  YLKEISEELPKTIGNYAFKMIGMRL--CDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151
            LK  S +  K  G  A ++IG              +  +++ D L   +  +  T    
Sbjct: 98  SLKRWSSQAEKIFGWKAEEIIGQDWHHWRFIFDEDFEAVHNVCDRLLEGSEKHNVTYNRN 157

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
                  +  +     ++    +      F                 +  ++F+ L E  
Sbjct: 158 YTKDGSVIYCEWYNSVLFDEEGKVKSILSFA--RDVTDRKQIEEKLHQHQQEFTTLVENS 215

Query: 212 KGHSSVEKEKYDIFSQQSPPPHL--RMKNKVSSLTEYYAHKDDVL----KTEKYPLLTSE 265
              ++   ++                  +     T       +            + ++ 
Sbjct: 216 PDITARFDKQLRHLYVNKAVELANGMPASTFIGKTNRELGMPETTCDLWDETLQKVFSTG 275

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL--SHRNHPSLSAYFDEGENLTP 323
           +    + E         Y  +      Q+NS ES   +         +     E E    
Sbjct: 276 QQQTIQFEFSTPTGKKYYDCRAVPEFAQDNSVESVLAIVRDISALKQVEEQLRESEARFQ 335

Query: 324 ETVDKCPIPFFVYSHG-NLFY-ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
             +   PI  F         +  NP+F     +     I      S L+      +   I
Sbjct: 336 IALKNSPIVVFNQDTDLRYTWIYNPTF----GFSPDSIIGKKD--SDLISQADAENLTNI 389

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
           K  +L             +         +           +     +       +  D +
Sbjct: 390 KRRVLETGIGRREEVQMIVA------GEAYFYNLTVEPLHDSNGAVVGITCTTTDISDRK 443

Query: 442 INKRKMEI-----------EVMQLCSILEATSDGIAIINREGIIL-STNRAVSKLFGY-P 488
             + +++               +L + L A  D I +++RE + L   N  ++K  G+  
Sbjct: 444 RQEAQLKELNETLESQVAQRTAELETFLNALPDYIFVVDRENMQLPFVNNTIAKASGFES 503

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK-K 547
              +  K           S+      ++         ++            + +I +K  
Sbjct: 504 RYQMQGKTIFECYPPELSSIFAQQNRQVFESGKMLHWQETITLPIGTIHFDTFKIPLKKP 563

Query: 548 LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
                    T  DI+E  + K  LS   +  E  +     F   VSH++R PL  I GF 
Sbjct: 564 NGEVYALIGTSRDITELIETKEALSKRTQELEIANKELEAFSYSVSHDLRAPLRHISGFG 623

Query: 608 EVIKN--QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
             ++   +  G L +P  + Y   I  S   +  +++ +L +S++  G+  L   PV+  
Sbjct: 624 NALRKQLELTGALSDPNTLRYLELIQNSSQKMGLLIDGMLTLSRL--GRRELRQVPVNFK 681

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725
           +    A +L      ++  LI       +P  +AD   ++Q+  N+++NA+ F+      
Sbjct: 682 QLAEIAFNLASPQITDEDGLIEFEI-REMPTAIADETLLQQVFTNLIANAVKFSRDRNPA 740

Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
            I+    S+  V   V+D GVG       +    F ++ + Q    EGTG+GL +A+ ++
Sbjct: 741 RITVGCLSDGTVF--VKDNGVGFDMKYANQLFGTFQRLHSQQG--FEGTGIGLAIAQRII 796

Query: 786 DANMGKFYIFSTPAKGTLIEIIF 808
             + G+ +  S P +G       
Sbjct: 797 HRHGGRIWAHSAPGQGATFYFKL 819


>gi|329955945|ref|ZP_08296748.1| PAS domain S-box protein [Bacteroides clarus YIT 12056]
 gi|328525325|gb|EGF52375.1| PAS domain S-box protein [Bacteroides clarus YIT 12056]
          Length = 867

 Score =  293 bits (750), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 86/528 (16%), Positives = 186/528 (35%), Gaps = 29/528 (5%)

Query: 293 QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLL 351
           ++N +E+ + +  +    +     E  +   +           Y     + + N + + +
Sbjct: 352 RSNRREARKRIHAQTRLLVQHRLVEQRDEFDKIFCSIRDGLITYDTDLRIHFVNRALVEM 411

Query: 352 TKYKSVDDIE---IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
               S   +          ++       +N     +     D+  +    +    +  + 
Sbjct: 412 LGLSSDTYMARSYEGQIAGSIFHIYMNGENILQTLLKQVIRDKKPVIIPEKAFMQENTKG 471

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468
               ++        +               +        E++       +E +S      
Sbjct: 472 AYFPVSGEVVPIFAKDKLTGMAIVCRNISEE--------EMQRRFFNMAIEESSIYPWQY 523

Query: 469 NREGIILSTNRAVSKLFGY--PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
           N           + + F        I R+   + +          +  +I+      +  
Sbjct: 524 NTRLKCFHFPGGLLQRFNCYDNTGYISREELDLIIHPGDLPRTRKHFNDIMLGHEPNS-R 582

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSC-----YSLTMHDISEWKQEKNKLSHAKKIAEKE 581
                   +                +             I  +K  +++L  A+  A + 
Sbjct: 583 MSFRLQNADGGYEWWEFRSTAYDGLTADIPYMVLGVCQSIQRYKDTEDELIAARDRALQA 642

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
              KS FLA +SHEIRTPL AI+GFS+++K+       +    ++   I+ +  L+L ++
Sbjct: 643 DKLKSAFLANMSHEIRTPLNAIVGFSDLLKD--LEAFSSEEVQQFVETININCTLLLALI 700

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILAD 700
           ND+LD+S+IESG M+      +L   + +     +L   +  + +RT F       I+ D
Sbjct: 701 NDILDLSRIESGTMDFQLSSYNLTFIMQQVYDSQRLSMPQ-GVELRTDFPEGTGKDIVTD 759

Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760
              +KQ+  N+++NA  FT  G  I +  +        + V DTG G+++ + +   + F
Sbjct: 760 SVRLKQVVNNLINNARKFTAKGS-ITLGYSMEEPGYTTVFVEDTGAGISDEDQKHIFERF 818

Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            +  +      +G GLGL + + +V+   G   + S   +GT  E+  
Sbjct: 819 YKADSFT----QGAGLGLSICQTIVERLHGTITVTSKLGRGTRFEVRL 862



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/214 (7%), Positives = 61/214 (28%), Gaps = 19/214 (8%)

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
            +  +  D   +     +  +       +                +            + 
Sbjct: 302 QLDFFHVDVESVEKRGTILNVPLMDRYRVWFILFYSVTVGALAFLVAWLYRSNRREARKR 361

Query: 443 NKR--------KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
                      ++  +  +   I  +  DG+   + +  I   NRA+ ++ G   +  + 
Sbjct: 362 IHAQTRLLVQHRLVEQRDEFDKIFCSIRDGLITYDTDLRIHFVNRALVEMLGLSSDTYMA 421

Query: 495 KPFT-------VFLEQNTPSVMNHYLTEILSLDLRQTL-EKITLGSTKEEKLLSLRIIIK 546
           + +          +  N  +++   L +++       + EK  +    +     +   + 
Sbjct: 422 RSYEGQIAGSIFHIYMNGENILQTLLKQVIRDKKPVIIPEKAFMQENTKGAYFPVSGEVV 481

Query: 547 KLPFSS---CYSLTMHDISEWKQEKNKLSHAKKI 577
            +         ++   +ISE + ++   + A + 
Sbjct: 482 PIFAKDKLTGMAIVCRNISEEEMQRRFFNMAIEE 515


>gi|284046820|ref|YP_003397160.1| multi-sensor signal transduction histidine kinase [Conexibacter
           woesei DSM 14684]
 gi|283951041|gb|ADB53785.1| multi-sensor signal transduction histidine kinase [Conexibacter
           woesei DSM 14684]
          Length = 625

 Score =  293 bits (750), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 107/617 (17%), Positives = 207/617 (33%), Gaps = 39/617 (6%)

Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255
             + L        +  +   +  + + ++   ++     R  +  S      A  D  L 
Sbjct: 16  AIRDLRATDRAARDTAQRVMATSRAQTELSDFETAHREARSGDAASVRELRIA--DAGLD 73

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
                L      S           L    +        + S+        R    ++   
Sbjct: 74  HRLDVLRGVLGGSTDSVAMQLRAQLAAIREHVGILDDPDVSRAQLAVEDRRAAAIVTQLD 133

Query: 316 DEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
              E      + +      +     +         +    +         L+ L    + 
Sbjct: 134 RLVETQRASLLKRREHTGAIARSAEITGVVGIVATILLVAACLYYIRRSVLTPLRRVAEA 193

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
           + +     +          +         ++             + N+         +E 
Sbjct: 194 ARSIDAGDLHARVGHDHGGSGEVAELAQTFD-------QMATSLEDNRTALQRQNAELES 246

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
              +     R        L ++L+AT D IA+++REG  +  N              +R 
Sbjct: 247 RGAELVDAVRSAREGASVLRAVLDATPDAIALLDREGAPIVDNP---------PMRAVRA 297

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--C 553
            F         +     L         +  ++ITL     ++  +      +        
Sbjct: 298 AFGERATAIDHNGTLVPLDAATDGGGEEARDEITLL--GTQRAFARYAAPVRDGHGRVIG 355

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
             L + +++  ++ +                K +F A VSHE+RTPLTAI+G+ E++  +
Sbjct: 356 RLLVLREVTGEREAE--------------RVKEEFFALVSHELRTPLTAILGYVELVLGE 401

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
             G   +     Y   ++R+   +L +V DLL  +++ESG + L    V L     EA+ 
Sbjct: 402 D-GATIDEEQHRYLQIVERNAQRLLRLVGDLLFAAQVESGALLLEPGSVDLPRVTLEAVE 460

Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
             +  A +  I +    A  +P +  D   + Q+  N++SNA+ FTPSGGQ+ +  +   
Sbjct: 461 AARPRAEDAGITLTAQIAPLVPCV-GDRDRLAQVLDNLISNALKFTPSGGQVGVRLSAAD 519

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
             E  + + DTGVG+   E  +    F +  N+      G GLGL + +A+V A+ G   
Sbjct: 520 -GEARIDISDTGVGVPAEEHARLFDRFFRASNATTRAVPGVGLGLMIVRAIVAAHGGTIG 578

Query: 794 IFSTPAKGTLIEIIFPL 810
           + S    GT   +  PL
Sbjct: 579 VDSEVGVGTTFTVRLPL 595


>gi|237749008|ref|ZP_04579488.1| two-component system sensor histidine kinase [Oxalobacter
           formigenes OXCC13]
 gi|229380370|gb|EEO30461.1| two-component system sensor histidine kinase [Oxalobacter
           formigenes OXCC13]
          Length = 825

 Score =  293 bits (750), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 98/541 (18%), Positives = 200/541 (36%), Gaps = 41/541 (7%)

Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN---LFYANPSFLLLT 352
            +   +    +N   +       +      +    +    +       L +AN  +  L 
Sbjct: 17  ERAMPKMDDSKNRTGIDGNEAVADYEYHTLMRLLGVSVSKHLLDENYTLVWANDYYYRLI 76

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
            +   ++ E        L               +  + +        + T+     + + 
Sbjct: 77  GW-PKEEYEARFHNRPDLYYANHQKQWNELVETVTSTIKADRNGYNLVTTMPRKDGSHIW 135

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL-EATSDGI--AIIN 469
           +                   +     D    +++         S+  +     +    +N
Sbjct: 136 VNISNVFSDEYVNGYQVSYTVITNIDDQIRMQKE--------QSVTYDNLPGFVARFQVN 187

Query: 470 REG-IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528
            EG   L  N      F    ++ L    +    +    V     + +   +    +   
Sbjct: 188 EEGFRFLGANERFRDFFDSSEQEGLAFGLSNVNTEKNRRVYLQNFSRMRRGER---VHFT 244

Query: 529 TLGSTKEEKLLSLRII---IKKLPFSSCYSLT---MHDISEWKQEKNKL-------SHAK 575
              + K    L  ++    I  +  +  Y +    + DI+E ++ + +L         A 
Sbjct: 245 LQATDKTGGNLWFQVNANCIDWINDNPVYLVIYIDITDITEQRELQRQLEERSVMLHDAL 304

Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
           + AE+ +  KS+FL+R+SH+IRTP+ AIIG +  I           R  +    I  S  
Sbjct: 305 QTAERANRSKSEFLSRMSHDIRTPMNAIIGMTA-IAGTHID--DRDRVKDCLGKITLSSK 361

Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN-NI 694
           L+L ++N++LD+S+IESG + +  E   L++ +   ++++Q     K+        +   
Sbjct: 362 LLLGLINEVLDMSRIESGNLAITEEEFCLNDMLQNLVTILQPSVMAKQHTFDIRAHHLRH 421

Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV-----ILRVRDTGVGMT 749
             ++ D + ++Q+ LNILSNAI +TP+GG+I+       +             D G GM 
Sbjct: 422 ENVIGDPQHIQQVFLNILSNAIKYTPAGGKIMFDIREKPSNTAGYGLYEFTFEDNGYGMK 481

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
              +EK   PF +  ++  +  +GTGLG+ +++ +V    G   + ST  KG+   +  P
Sbjct: 482 PEFIEKLFSPFERADDADVLAVQGTGLGMAISRNIVKLINGDIKVKSTYRKGSTFTVELP 541

Query: 810 L 810
           L
Sbjct: 542 L 542


>gi|228958865|ref|ZP_04120571.1| hypothetical protein bthur0005_23630 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228800802|gb|EEM47713.1| hypothetical protein bthur0005_23630 [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 590

 Score =  293 bits (750), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 88/501 (17%), Positives = 175/501 (34%), Gaps = 41/501 (8%)

Query: 314 YFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                E      +   P+    +  +G+    N    ++T Y + + I     L  L   
Sbjct: 102 LLSRKEEELHTILQNMPVMVDALDYNGDFVLWNRECEIVTGYTAEEIIGNPNALQLLYPN 161

Query: 373 PKLSDNNAIKPVM----LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
                    K +         +      +  + TI W+                      
Sbjct: 162 HNYRHQIQKKFLTCGKNFRDWEMHLTCKNGEIKTIMWSN-----------ISEQFPVTGY 210

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
               +  +    +  + +++ +  +L  I +A  D   +   +G I+         F  P
Sbjct: 211 SYWAVGVDITHLKAIEEQLKQQTSELELIFKALPDLCFLTEDDGTIIDYKAGSPTKFYVP 270

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            E  + K F   L  +        + ++        +E           +         L
Sbjct: 271 AEAFMGKKFYEVLPSSVAQQFQEAINQVKEKGTNVIVEYPLTL---NGSIDFFEARCLPL 327

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                  + + DI+E K+ +  L+ +  +A           A V+HE+R PLT I GF +
Sbjct: 328 LHDK-IMIIVRDITERKKTEELLNKSDTLA-----AIGQLAAGVAHEVRNPLTVIKGFIQ 381

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
                    +       Y + +      +  I+ + L I+K +     ++ E  ++ +  
Sbjct: 382 ------LFQINKEDQERYFDLMLSEIERIEAILQEFLSIAKTD----EINTEKKNIYQIF 431

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
              +SL+   A    I +          I      +KQ+ +NIL N+I   P+GG+I I 
Sbjct: 432 KNVVSLMNTKAIMTNIQVDLFTDGKDIIIECSENQLKQVFINILQNSIEAMPNGGEISIH 491

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
               +++ VI+ V D G+G+    +++  +PF         + +GTG+GL L+  +++++
Sbjct: 492 IKEINDDGVIIHVIDEGIGIPEERIKRLGEPFY------STKEKGTGIGLMLSYKIIESH 545

Query: 789 MGKFYIFSTPAKGTLIEIIFP 809
            G   I S    GT + I  P
Sbjct: 546 QGTISIMSEVGVGTTVTIYLP 566


>gi|204926772|ref|ZP_03217974.1| phosphate regulon sensor protein PhoR [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|204323437|gb|EDZ08632.1| phosphate regulon sensor protein PhoR [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
          Length = 431

 Score =  293 bits (750), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 72/427 (16%), Positives = 156/427 (36%), Gaps = 37/427 (8%)

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             +L       +     L  + W     L +         +        G+    +  + 
Sbjct: 33  WFLLAAVTGLLVWHFWNLLRLSW----WLWVDRSMTPPPGRGSWEPLLYGLHQMQLRNKK 88

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            +R++   + +  S  E+  D + +   EG I   N    ++ G    D   +     L 
Sbjct: 89  RRRELGNLIKRFRSGAESLPDAVVLTTEEGGIFWCNGLAQQILGLRWPDDNGQNILNLLR 148

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
               +               +   +         + L +R++           +   D++
Sbjct: 149 YPEFTQYL----------KTRDFTRPLHLVLNTGRHLEIRVMPY---TDKQLLMVARDVT 195

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  Q +                + +F A VSHE+RTPLT + G+ E+++ Q        +
Sbjct: 196 QMHQLEG--------------ARRNFFANVSHELRTPLTVLQGYLEMMQEQALEGATRDK 241

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                + +      +  +V  LL +SKIE+    L  E V +   +       Q  + +K
Sbjct: 242 A---LHTMREQTYRMEGLVKQLLTLSKIEAAPALLLNEKVDVPMMLRVVEREAQTLSQQK 298

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
                    +++  +L +   ++    N++ NA++ TP+G  I +S    ++      ++
Sbjct: 299 H-TFTFEVDDSL-SVLGNEEQLRSAISNLVYNAVNHTPAGTHITVSWRRAAHG-AEFCIQ 355

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G G+    + +  + F ++  ++  +  G+GLGL + K  ++ +  +  I S+P KGT
Sbjct: 356 DNGPGIAAEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHALNHHESRLEIDSSPGKGT 415

Query: 803 LIEIIFP 809
               + P
Sbjct: 416 RFSFVLP 422


>gi|255531602|ref|YP_003091974.1| PAS sensor protein [Pedobacter heparinus DSM 2366]
 gi|255344586|gb|ACU03912.1| PAS sensor protein [Pedobacter heparinus DSM 2366]
          Length = 975

 Score =  293 bits (750), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 120/722 (16%), Positives = 248/722 (34%), Gaps = 51/722 (7%)

Query: 109 YAFKMIGMRLC-DVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLY---VPIDLA 164
                +G  L   V      +       + +  +         PI  T L    + I++A
Sbjct: 288 PVKDELGRTLSIMVVATEVTEQVKARKVIEESAHQLRRMVMTTPIGLTILKGTELSIEIA 347

Query: 165 ALPIYS----RNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKE 220
             P+      R+ E  G     +         P  L    D          K    +   
Sbjct: 348 NQPMLDIWGRRDEEVIGRNLTNVFPELADQPFPALLRNIFDTGKRVAEPSAKATIVLSDG 407

Query: 221 KYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINL 280
            +           L   +               L   +  L   +E      E+F   N 
Sbjct: 408 TFKEIYVDFSYDPLFDLDGNVEAILASVKDVTELTEGRKMLQQRQEELETLNEEFLAANE 467

Query: 281 NQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN 340
                       Q + K  FE               + E       ++ P+         
Sbjct: 468 ELVATNDELFETQEDLKLLFE------------RLKDNETRFRSLFEQSPVGMCFLKGEE 515

Query: 341 --LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR-TCIAAS 397
             +  AN + L +      + +     L+     P+L      + +          I   
Sbjct: 516 LIIELANENILKIWGRTREEVVGKPHALAR----PELRGQPMNEWLREVYVTGIPRINNE 571

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
            ++            +  +     ++         I  +       ++++E    QL   
Sbjct: 572 LKVKLYDKGGLREAFVHSLYHPLKDEQGVVTGLLIILSDVTPWVQTRKQVEWAQEQLSQA 631

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLTEI 516
           +++   G   I  E      ++ + +LFG+  ++++        +  +    +   + + 
Sbjct: 632 IQSAELGTWYIKTETREFIPSQRLKELFGFQKDEVMTFADAIKLITDDYRESVVKAIEDT 691

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLS 572
           +    R  LE   + S ++ +L  LR   K  P  S     +S T+ DI+  K E+ +  
Sbjct: 692 IENGSRFELEYP-IHSYRDGQLRWLRSTGKLYPAESGTASHFSGTVLDITAHKLEEIR-- 748

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
                       K+DF+A VSHE++TPLT++ G+ ++++ +      +  +   +     
Sbjct: 749 ------------KNDFIAIVSHELKTPLTSLKGYLQLMRGRFDSSAAHSFFSTVSEKSLA 796

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
               +  +V   LD++++ES K+ L+ +P+ +D+ V E+     L  ++  I++      
Sbjct: 797 QVEKMHSLVKGFLDVARLESAKLVLNLQPMRIDQLVLESAEEASLMYDQHEIIVEYC--- 853

Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752
               ++AD   + Q+  N+LSNAI ++P G  + +S       EV++ V+D G+G+  +E
Sbjct: 854 EPVEVMADRDKITQVLGNLLSNAIKYSPRGKIVSMSCKVI-GTEVLVEVKDQGMGIKQHE 912

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
           + K    F ++         G G+GL L   ++  + G+ ++ S    G+      P+  
Sbjct: 913 ISKVFDRFYRVETKHTTTISGFGIGLYLCAEIIKLHNGRIWVESKIGVGSSFFFSLPIGK 972

Query: 813 TS 814
            S
Sbjct: 973 VS 974



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/428 (7%), Positives = 104/428 (24%), Gaps = 69/428 (16%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL----KRQNTWYGKT 147
              ++  ++ +    G    ++IG  L +V   L   P   +   +    KR      K 
Sbjct: 341 ELSIEIANQPMLDIWGRRDEEVIGRNLTNVFPELADQPFPALLRNIFDTGKRVAEPSAKA 400

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF--GIVHVNRVDNDPRALGKRLDKKFS 205
           T+   +GT   + +D +  P++  +            +  +       +   + L+    
Sbjct: 401 TIVLSDGTFKEIYVDFSYDPLFDLDGNVEAILASVKDVTELTEGRKMLQQRQEELETLNE 460

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA----------------- 248
                 +   +   E ++           R+K+  +     +                  
Sbjct: 461 EFLAANEELVATNDELFETQEDLKLLFE-RLKDNETRFRSLFEQSPVGMCFLKGEELIIE 519

Query: 249 -----------HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTK------------ 285
                         + +  + + L   E    P  E    + +    +            
Sbjct: 520 LANENILKIWGRTREEVVGKPHALARPELRGQPMNEWLREVYVTGIPRINNELKVKLYDK 579

Query: 286 --------KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG----ENLTPETVDKCPIPF 333
                      +  L++        L   +  +      +     +    + +    +  
Sbjct: 580 GGLREAFVHSLYHPLKDEQGVVTGLLIILSDVTPWVQTRKQVEWAQEQLSQAIQSAELGT 639

Query: 334 FVYSHGNLFYA-NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
           +        +  +     L  ++  + +        +         + +K +     + +
Sbjct: 640 WYIKTETREFIPSQRLKELFGFQKDEVM---TFADAIKLITDDYRESVVKAIEDTIENGS 696

Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
                  +H+ +        +         +       +G   +    ++     EI   
Sbjct: 697 RFELEYPIHSYR--DGQLRWLRSTGKLYPAESGTASHFSGTVLDITAHKLE----EIRKN 750

Query: 453 QLCSILEA 460
              +I+  
Sbjct: 751 DFIAIVSH 758


>gi|56414447|ref|YP_151522.1| phosphate regulon sensor protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197363368|ref|YP_002143005.1| phosphate regulon sensor protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56128704|gb|AAV78210.1| phosphate regulon sensor protein PhoR [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197094845|emb|CAR60378.1| phosphate regulon sensor protein PhoR [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 431

 Score =  293 bits (750), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 72/427 (16%), Positives = 156/427 (36%), Gaps = 37/427 (8%)

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             +L       +     L  + W     L +         +        G+    +  + 
Sbjct: 33  WFLLAAVTGLLVWHFWNLLRLSW----WLWVDRSMTPPPGRGSWEPLLYGLHQMQLRNKK 88

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            +R++   + +  S  E+  D + +   EG I   N    ++ G    D   +     L 
Sbjct: 89  RRRELGNLIKRFRSGAESLPDAVVLTTEEGGIFWCNGLAQQILGLRWPDDNGQNILNLLR 148

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
               +               +   +         + L +R++           +   D++
Sbjct: 149 YPEFTQYL----------KTRDFTRPLHLVLNTGRHLEIRVMPY---TDKQLLMVARDVT 195

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  Q +                + +F A VSHE+RTPLT + G+ E+++ Q        +
Sbjct: 196 QMHQLEG--------------ARRNFFANVSHELRTPLTVLQGYLEMMQEQALEGAMREK 241

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                + +      +  +V  LL +SKIE+    L  E V +   +       Q  + +K
Sbjct: 242 A---LHTMREQTYRMEGLVKQLLTLSKIEAAPALLLNEKVDVPMMLRVVEREAQTLSQQK 298

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
                    +++  +L +   ++    N++ NA++ TP+G  I +S    ++      ++
Sbjct: 299 H-TFTFEVDDSL-SVLGNEEQLRSAISNLVYNAVNHTPAGTHITVSWRRVAHG-AEFCIQ 355

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G G+    + +  + F ++  ++  +  G+GLGL + K  ++ +  +  I S+P KGT
Sbjct: 356 DNGPGIAAEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHALNHHESRLEIDSSPGKGT 415

Query: 803 LIEIIFP 809
               + P
Sbjct: 416 RFSFVLP 422


>gi|53715629|ref|YP_101621.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
 gi|253566558|ref|ZP_04844011.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|52218494|dbj|BAD51087.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
 gi|251944730|gb|EES85205.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|301165085|emb|CBW24653.1| putative two-component system sensor kinase/response regulator
           fusion protein [Bacteroides fragilis 638R]
          Length = 557

 Score =  293 bits (750), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 99/394 (25%), Positives = 164/394 (41%), Gaps = 28/394 (7%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTN-------------RAVSKLFG----Y 487
           RK+E       +IL      + +I+ +  +L TN             + V  L       
Sbjct: 34  RKLENVNCLFDAILTHIHAYVLVIDSDFKVLKTNYYDLTHLSPDGKEKRVGDLLQCRNAL 93

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
             +                ++ N +  +    DL+ +L          +  + +  +   
Sbjct: 94  SAKGGCGTHAFCQECPVRGAIGNAFRQKKEFTDLQSSLNIAIDEHEFVKCDVMISGVFMT 153

Query: 548 LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
           L       LT+HDI+  KQ +  L+ AK+ AE     KS FLA +SHEIRTPL AI+GFS
Sbjct: 154 LDSEERMVLTVHDITSIKQTEEALAEAKEKAENADRSKSAFLANMSHEIRTPLNAIVGFS 213

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
           E++              +Y   +  +  L+L +VND+LD+SKIE+G +   +  V ++  
Sbjct: 214 ELLA----AANTEEEKQKYLEILHTNSELLLQLVNDILDLSKIEAGTLEFVYSDVDINLL 269

Query: 668 VSEAISLVQLYANEKR-ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726
           +++   L ++       + I T        +  D   + Q+  N +SNAI FT  G  I 
Sbjct: 270 LNDLEQLFRMKIGSNSPVQIITEPGLPSCMVHTDRNRIAQVVSNFVSNAIKFTTEGS-IR 328

Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
           I    + N  +   V DTG G++  +LE     F ++ + +     G GLGL + K +V+
Sbjct: 329 IGYQSSENG-LRFYVSDTGSGISADKLEGVFDRFVRLQSDKN----GNGLGLSICKTIVN 383

Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820
              G+    S   KG+      P +    P   I
Sbjct: 384 KLGGEIGAESEVGKGSTFWFTLPEHSDIKPKVII 417


>gi|67922645|ref|ZP_00516150.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal:Hpt
           [Crocosphaera watsonii WH 8501]
 gi|67855493|gb|EAM50747.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal:Hpt
           [Crocosphaera watsonii WH 8501]
          Length = 731

 Score =  293 bits (750), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 76/261 (29%), Positives = 133/261 (50%), Gaps = 14/261 (5%)

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
             ++   ++E  +   ++K  E+ +  KS+FL+ + HEIRTPL A+ G + ++ +     
Sbjct: 52  FQELQYLQEEIAEQKASEKALEELNLAKSEFLSMMGHEIRTPLNAVTGMTGLLLDTEL-- 109

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
             + +  E+ N I  SG  +L ++N++LD SKIE+ K+ L   P  L   + E + L   
Sbjct: 110 --SDQQKEFVNIIRNSGENLLTMINNILDFSKIEANKLELEEAPFELGLCIEEVLRLFVS 167

Query: 678 YANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNE 735
            A++K++ +      N P  I+ D   +KQI  N++ NA+ FTP G  +I +S+T     
Sbjct: 168 QASQKKLELAYLLEPNTPSGIVGDSTRLKQILANLIGNAVKFTPEGEVVIYVSSTVIEGG 227

Query: 736 E--------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
           E        +   V+DTG+G+      +  +PF Q+  S   +  GTGLGL ++K + + 
Sbjct: 228 EGEVNPNYELRFAVKDTGIGIPKERCHRLFQPFSQVDASTTRQYGGTGLGLVISKRLSEL 287

Query: 788 NMGKFYIFSTPAKGTLIEIIF 808
             GK ++ S   KG+      
Sbjct: 288 MGGKMWVHSEEGKGSTFNFTL 308


>gi|323137189|ref|ZP_08072268.1| multi-sensor signal transduction histidine kinase [Methylocystis
           sp. ATCC 49242]
 gi|322397547|gb|EFY00070.1| multi-sensor signal transduction histidine kinase [Methylocystis
           sp. ATCC 49242]
          Length = 814

 Score =  293 bits (750), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 120/571 (21%), Positives = 220/571 (38%), Gaps = 52/571 (9%)

Query: 277 TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY 336
                +Y     F TL         +   R   ++              + +     + +
Sbjct: 196 RAIAARYALLFAFTTLMLLVIVYGYFRQTRRRQAVEHVNALIRKRLETALSRGRCGLWDW 255

Query: 337 S--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394
               G + Y + S   +    +       G L+ L+           + V   R+     
Sbjct: 256 DIARGRI-YWSDSMYEMLGLPAERRCLSFGELNALIHPEDGDLTVIAEMVSASRTKSVD- 313

Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
                    +      + +                  GI  +  + R          M+L
Sbjct: 314 ----HEFRAKHADGRWIWVRARAQLVDEANDPGKHLVGIAVDVSEQRALAEHTATANMRL 369

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED-ILRKPFTVFLEQNTPSVMNHYL 513
              ++A S+   + + +  +++ N     L G   +  I    +   + + T  ++    
Sbjct: 370 RDAIDAISEAFVLWDAQNRLVTCNSKFLDLHGLSADAAIAGATYAQIMMRATAPLIQ--- 426

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL-- 571
           TEI S + R    +       + + L +    ++      Y     DI+  K+ + KL  
Sbjct: 427 TEISSAEQRAADARTYEARLADGRWLQIN---ERRTKDGGYVSVGADITALKRNEEKLLE 483

Query: 572 ---------------------------------SHAKKIAEKESSHKSDFLARVSHEIRT 598
                                             H K  AE     KS+FLA +SHE+RT
Sbjct: 484 SERRLTASVTDLTRSRQTLEMQAQQLATLAEQYHHQKAEAEAAYLAKSEFLANMSHELRT 543

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
           PL AIIGFSE+++ + FG LG+P+Y+EY N I + G  + ++++D+LD+S++E+G + L 
Sbjct: 544 PLNAIIGFSEMMQAEPFGSLGSPKYVEYCNNIRQGGAYLNEVLSDILDMSRLEAGLVRLA 603

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718
              V++ +A   AI+  +  A+ K I I     + +  I  D  ++ +    +LSN+I F
Sbjct: 604 EREVNVADATRRAIASWRSRADAKNIQIVAEADDRLRCI-GDESAIVKALGVLLSNSIKF 662

Query: 719 TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
           T +GG I +         + + V DTG G+    + +  +PF Q  +  +   +G+GLGL
Sbjct: 663 TDAGGFIRLR-ARRHGAAIAIFVEDTGRGIDPRAISRLGRPFEQSADLMENGMKGSGLGL 721

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            +A+A+VD + G   I S    GT+  +  P
Sbjct: 722 AIARALVDLHGGALRIRSRLGLGTIAMMRLP 752


>gi|150395841|ref|YP_001326308.1| histidine kinase [Sinorhizobium medicae WSM419]
 gi|150027356|gb|ABR59473.1| histidine kinase [Sinorhizobium medicae WSM419]
          Length = 525

 Score =  293 bits (750), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 101/362 (27%), Positives = 172/362 (47%), Gaps = 12/362 (3%)

Query: 458 LEATSDG----IAIINREGIILSTNRA-VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
           L+   D     + + +  G + S +     +      +    + F   +  +        
Sbjct: 104 LDTAYDLFAGLVTVHDIRGHVRSVHGRDAREYLKLMRDP-QGRGFIEQIHVSDRIAFLRA 162

Query: 513 LTEILSLDLRQTLEKITLGSTKEE-KLLSLRIIIKKLPFSSC----YSLTMHDISEWKQE 567
           +  +     R  ++     ++ +  +       +  L  +            D+SE  + 
Sbjct: 163 IDSLRLDSERTAVDIRLERTSADGPQFAHFYCEMTPLRDAEGNLLAIVAQSRDVSEGARL 222

Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
           + + +     AE  +  K+ FLA VSHE+RTPL AI+GFS+V+  + FG L N R  EY 
Sbjct: 223 QAEAAARAAHAESANDAKTRFLAAVSHELRTPLNAILGFSDVLAGEYFGKLENDRQREYV 282

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
           + I +SG  +L +VN +LD+SKIE+G+  L  EP  + EA++   +++   A EK + + 
Sbjct: 283 SLIHQSGTHLLSVVNTMLDMSKIEAGRYELLREPFRVAEAIAACEAMLSHQAREKGVRLA 342

Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747
           +    ++  I AD R+V+QI +N++ NAI FT  GG + +         + L V DTG+G
Sbjct: 343 SRVTRSVGEINADQRAVQQILINLVGNAIKFTDRGGLVTVDAARE-GALLKLTVSDTGIG 401

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           +   +L+   +PF QI N    R EGTGLGL L K + + + G   I S   +GT + + 
Sbjct: 402 IAADKLKMLGQPFVQIQNDYTRRYEGTGLGLSLVKGLAELHGGDVSIRSAEGEGTEVVVS 461

Query: 808 FP 809
            P
Sbjct: 462 IP 463


>gi|212212750|ref|YP_002303686.1| two component system histidine kinase [Coxiella burnetii CbuG_Q212]
 gi|212011160|gb|ACJ18541.1| two component system histidine kinase [Coxiella burnetii CbuG_Q212]
          Length = 831

 Score =  293 bits (750), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 90/511 (17%), Positives = 192/511 (37%), Gaps = 40/511 (7%)

Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
            F+   G +  AN   + L + K               D    +   A K  +    ++ 
Sbjct: 48  LFISDEGFIEAANDFAIKLLQLKP----------DQFPDVDFHAFCRANKYSLSRFFNKV 97

Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
                A   T        + +       +           +  +    ++   +++ ++ 
Sbjct: 98  EPPTEALEETYLLKGRQYVILW-KIIRFSQFDDMLKGSLLVGHDRTQLKLVSGELKSKIF 156

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL--RKPFTVFLEQNTPSVMN 510
              +IL      +   ++  + L  N  ++++ G P    +     F     +       
Sbjct: 157 FYENILSKLPTNVYWKDKNSVYLGCNERLARVMGLPSRKAIEGMTDFDFVWGKEAAKSFI 216

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQ 566
            +  +++   +    E   +       ++++      L               DI+E K+
Sbjct: 217 EFDQKVMRSGIPLMTED--VFKEASGNIVTVLTNKTPLKNEHGETIGVLAISVDITELKK 274

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI--KNQRFGPLGNPRYI 624
            + +L   ++ AE  +  KS+F+A +SH+IRTP+  ++G  + +    +      N   +
Sbjct: 275 TQAQLEIQRQKAEAANKAKSEFIANMSHDIRTPIAGMLGMLQDLFNVAEETKTSSNASIL 334

Query: 625 EYANYIDR-------SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
                + R       + + +L + N++L++ ++ESGK +   E   L E +   I L+Q 
Sbjct: 335 NVIETVQRDSELLMGATDELLQLCNEILEVVRLESGKESEQSEAFDLRELIKRTIELLQP 394

Query: 678 YANEKRILIRTSFANNIPRILADLRS--VKQIALNILSNAIHFTPSG-GQIIIST----- 729
            A++K++ +       IP+   D     + +  LN++SNA+ FT +G  ++ +       
Sbjct: 395 VAHQKKLTLACEVDEGIPQ-YLDGIRMYLSRTLLNLISNALKFTENGFVKVKVRLSDKTN 453

Query: 730 ---THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
                     + + V DTG+G+   + +   + F ++  S +   +G GLGL   K  VD
Sbjct: 454 SHYRVGDKATIQIAVEDTGMGIPRDKFDTIFEHFSRLTPSYEGLYKGAGLGLYTVKRYVD 513

Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
           A  G+  + S   KGT   +I P     H  
Sbjct: 514 AIGGEITVDSEVGKGTCFTVIIPFTVADHAE 544



 Score = 39.6 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 28/260 (10%), Positives = 72/260 (27%), Gaps = 17/260 (6%)

Query: 81  RTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI----GDL 136
                 W  D +      +E L + +G  + K I   + D   +   +           +
Sbjct: 165 LPTNVYWK-DKNSVYLGCNERLARVMGLPSRKAI-EGMTDFDFVWGKEAAKSFIEFDQKV 222

Query: 137 LKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRAL 196
           ++       +       G    V +     P+ + + E  G     +          +A 
Sbjct: 223 MRSGIPLMTEDVFKEASGNI--VTVLTNKTPLKNEHGETIGVLAISV--DITELKKTQAQ 278

Query: 197 GKRLDKKFSHLHEIKKGHSSVEKEKYDI----FSQQSPPPHLRMKNKVSSLTEYYAHKDD 252
            +   +K    ++ K    +                        +   +S      +  +
Sbjct: 279 LEIQRQKAEAANKAKSEFIANMSHDIRTPIAGMLGMLQDLFNVAEETKTSSNASILNVIE 338

Query: 253 VLKTEKYPLLTSEESSLP---EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
            ++ +   L+ + +  L    E  +   +   + +++     L+   K + E L    H 
Sbjct: 339 TVQRDSELLMGATDELLQLCNEILEVVRLESGKESEQSEAFDLRELIKRTIELLQPVAHQ 398

Query: 310 SLSAYFDEGENLTPETVDKC 329
                  E +   P+ +D  
Sbjct: 399 KKLTLACEVDEGIPQYLDGI 418


>gi|158333448|ref|YP_001514620.1| two-component hybrid sensor and regulator histidine kinase
           [Acaryochloris marina MBIC11017]
 gi|158303689|gb|ABW25306.1| two-component hybrid sensor and regulator histidine kinase
           [Acaryochloris marina MBIC11017]
          Length = 755

 Score =  293 bits (750), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 74/231 (32%), Positives = 126/231 (54%), Gaps = 12/231 (5%)

Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
           K DFLA +SHEIRTP+  +IG + ++ +    P    +  EY   I +SG+ +L ++ND+
Sbjct: 236 KDDFLAMMSHEIRTPMNGVIGMTGLLLDTELTP----QQQEYTETIRKSGDSLLTLINDI 291

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRS 703
           LD SKIE+GK++L  +  ++   V +A+ LV      K I +      ++P+ IL D+  
Sbjct: 292 LDYSKIEAGKLDLEKQAFNVRVCVEDALELVASRVGPKEIELAGVVEPDVPQAILGDVTR 351

Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNE------EVILRVRDTGVGMTNYELEKAM 757
           ++QI +N+L NAI FT SG +++++ +           E+   VRDTG+G+      +  
Sbjct: 352 LRQILVNLLGNAIKFTQSG-EVVVNVSAEPFAADTPLYELSFAVRDTGMGIPAERQNRLF 410

Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           K F Q+ +S   +  GTGLGL + K + +   G+ ++ S   +G+      
Sbjct: 411 KSFSQVDSSTTRKFGGTGLGLVICKRLSELMGGRIWVESEEGQGSTFAFTI 461


>gi|320322202|gb|EFW78298.1| sensory box histidine kinase [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320331853|gb|EFW87791.1| sensory box histidine kinase [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 595

 Score =  293 bits (750), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 89/427 (20%), Positives = 172/427 (40%), Gaps = 28/427 (6%)

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK--R 445
            + R      A         E    +T  P   A +      + GI  E +         
Sbjct: 193 IARRFGAPIEALAKAADRIGEGDYEVTL-PISSAAEMNLLTRRFGIMAEALRQHQATNID 251

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           ++     +L ++L++  DG+ +I+R+G +   N    +  G+    + +           
Sbjct: 252 ELLAGQQRLQAVLDSIDDGLLMIDRQGHLEHLNPVAQRQLGWDESRLGQSLGDALGRPEL 311

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISE 563
              ++  L         + L         E +LL+  +              + +HD++E
Sbjct: 312 DEQLHLVLRGGTLERAPEDLAIEI---DGESRLLTYSMTPVSHTKGHILGAVMVLHDVTE 368

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            +  +                +S+F+ R SHE+RTP+T  +  +  +  +R       R 
Sbjct: 369 QRAFE--------------RVRSEFVLRASHELRTPVTG-MHMAFGLLQERLHFAPETRE 413

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            +  N +      ++ ++NDLL+ S+ ++G   L   P S++  + EA +  +  A E+ 
Sbjct: 414 ADLLNTVTEEMQHLMQLINDLLNFSRYQNGLQKLKLAPCSIETLLEEARARFEDKALEQD 473

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
           I++       +PR+ AD   ++++  N+L NA+  TP  G I +       E  I+ V D
Sbjct: 474 IVLMLDMQEPMPRLHADQSQLERVLDNLLDNALRHTPQNGLIRLQ-ARRHGERAIISVED 532

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
            G G+   +  +  +PF Q+      +  G GLGL L K +V  + G+  ++S P +GT 
Sbjct: 533 NGEGIAYGQQGRIFEPFVQV----GRKKGGAGLGLALCKEIVQLHGGRMGVYSRPGQGTQ 588

Query: 804 IEIIFPL 810
             +  PL
Sbjct: 589 FYMALPL 595



 Score = 44.6 bits (104), Expect = 0.075,   Method: Composition-based stats.
 Identities = 33/241 (13%), Positives = 69/241 (28%), Gaps = 9/241 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G+L+ ++    + +G    + +G  L D      +D       L+ R  T      
Sbjct: 274 IDRQGHLEHLNPVAQRQLGWDESR-LGQSLGDALGRPELDEQ---LHLVLRGGTLERAPE 329

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
              IE       +  +  P+        G     ++H          +  R +      H
Sbjct: 330 DLAIEIDGESRLLTYSMTPVSHTKGHILGA--VMVLHDVTEQRAFERV--RSEFVLRASH 385

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           E++   + +      +  +    P  R  + ++++TE   H    L  +       +   
Sbjct: 386 ELRTPVTGMHMAFGLLQERLHFAPETREADLLNTVTEEMQHLMQ-LINDLLNFSRYQNGL 444

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
              +    +I       +  F                   P L A   + E +    +D 
Sbjct: 445 QKLKLAPCSIETLLEEARARFEDKALEQDIVLMLDMQEPMPRLHADQSQLERVLDNLLDN 504

Query: 329 C 329
            
Sbjct: 505 A 505


>gi|188533372|ref|YP_001907169.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Erwinia tasmaniensis Et1/99]
 gi|188028414|emb|CAO96275.1| Sensor kinase protein (Capsular synthesis regulator component C)
           [Erwinia tasmaniensis Et1/99]
          Length = 951

 Score =  293 bits (750), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 94/371 (25%), Positives = 169/371 (45%), Gaps = 29/371 (7%)

Query: 446 KMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           ++E +      I+ +   GI I+   +G  + +N                  +   L Q 
Sbjct: 353 RLEEQEQFNRKIVASAPVGICILRTSDGTNILSNELA-------------HNYLTLLTQE 399

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564
                   LTE++       ++      T     L +  +  +    +     + D+S  
Sbjct: 400 DRL----RLTEMICGQQVNFVD----VLTGSNTNLQISFVHSRYRNENVAICVLVDVSAR 451

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
            + +  L    K AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G     
Sbjct: 452 VKMEQSLHEIAKEAEQASESKSMFLATVSHELRTPLYGIIGNLD-LLKTKALPAGAES-- 508

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
                ++ S +L+L I++D+LD SKIES ++ +     S  E ++   +       +KR+
Sbjct: 509 -LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVIAHITANYLAMVVKKRL 567

Query: 685 LIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
            +     +++P ++  D   ++Q+  N+L+NAI FT +GG II+   +   + +   VRD
Sbjct: 568 TLWCFINSDVPVLMEGDPMRLQQVISNLLNNAIKFTHTGG-IILQV-YVKGDYLTFCVRD 625

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           +GVG++  EL +   PF Q+ +  Q   +GTGLGL + + +++   G   + S P  G+ 
Sbjct: 626 SGVGISAKELTRLFDPFVQVGSGVQRNFQGTGLGLAICEKLMNMMDGDIEVDSEPDMGSQ 685

Query: 804 IEIIFPLYDTS 814
             +  PLY++ 
Sbjct: 686 FVVRIPLYNSH 696


>gi|254443048|ref|ZP_05056524.1| Two component regulator three Y motif family [Verrucomicrobiae
            bacterium DG1235]
 gi|198257356|gb|EDY81664.1| Two component regulator three Y motif family [Verrucomicrobiae
            bacterium DG1235]
          Length = 1320

 Score =  293 bits (750), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 77/262 (29%), Positives = 135/262 (51%), Gaps = 9/262 (3%)

Query: 563  EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
            E  +  ++L  + K A+K    KS FLA +SHEIRTP+  ++G   ++ + +        
Sbjct: 792  ELDETNDELRASVKEAKKAGQAKSQFLANMSHEIRTPMNGVMGMCTLLNDTQLSNT---- 847

Query: 623  YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
              +Y + I  S   +L I+ND+LD SKIE+GK+ +   P  L + V + + L   +  +K
Sbjct: 848  QRDYVSTIRSSSETLLTIINDILDFSKIEAGKLQIETIPFDLVDLVEDVLDLFSQHLEQK 907

Query: 683  RILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN-EEVILR 740
            ++ +    A ++  + + D   ++QI +N++ NAI FT SG  I IS     + +E+ + 
Sbjct: 908  KLDLVHHIAASVSTQRIGDPTRIRQILVNLVGNAIKFTTSG-DIYISIESGDDPDEITIE 966

Query: 741  VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
            VRD+G+G+   +L    +PF Q   S   +  GTGLGL ++K + +   G+ +  S    
Sbjct: 967  VRDSGIGIDQRKLNDLFQPFSQEDESITRKYGGTGLGLSISKMLAEIMHGRLWAESEIGV 1026

Query: 801  GTLIEIIF--PLYDTSHPHDCI 820
            G+        P+  +S   + I
Sbjct: 1027 GSSFFFTIKTPVDKSSTNTEAI 1048


>gi|153806751|ref|ZP_01959419.1| hypothetical protein BACCAC_01022 [Bacteroides caccae ATCC 43185]
 gi|149131428|gb|EDM22634.1| hypothetical protein BACCAC_01022 [Bacteroides caccae ATCC 43185]
          Length = 902

 Score =  293 bits (750), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 101/487 (20%), Positives = 178/487 (36%), Gaps = 34/487 (6%)

Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
           F     G + +AN  FL         DI           A  +    A            
Sbjct: 264 FAAREDGTIIFANRRFLHNHGICENVDICKLKIYD---IAADMPTQKAWNERCKDIMHGG 320

Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
                A   +       +   T       +             +  +    + +++   +
Sbjct: 321 SSNFIAHHPSKINRDILAYEGTMYNVTNDSGEESYWSFA---HDISERIRYEAQIKRLNL 377

Query: 453 QLCSILEATSDGIAI--INREGIILSTNR-AVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
            + + +     GI +  IN +   L  NR + ++     V +   K    +         
Sbjct: 378 IMDTTINNLPAGIVVKEINNDFRYLYRNRESYNR--DLCVGESFGKNDFDYYPPIVADKK 435

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWK 565
                ++ +      L   T G  K    + L     ++               DI+E +
Sbjct: 436 RQEDIQVATTGK--GLHWTTEGRDKNGNRIILDKRKIRVDGDELSSPIIVSIEWDITELE 493

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
             K +L  +K+ AE     KS FLA +SHEIRTPL AI+GFS++I               
Sbjct: 494 MIKRELQSSKEKAEMSDKLKSAFLANMSHEIRTPLNAIVGFSQLIAESN----DEEERKT 549

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA--ISLVQLYANEKR 683
           Y   ++ +   +L+++N++LD+SKIESG +     P SL     E     + ++      
Sbjct: 550 YYGIVESNNGRLLELINEILDLSKIESGIIEFTIGPTSLHNLCREVHDAHIFRMPV---G 606

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS-NEEVILRVR 742
           + +    ++    I  D   V Q+  N++ NA  FT  G    IS  +    ++++  V 
Sbjct: 607 VSLVHEPSDESLMIETDKNRVFQVISNLIGNAAKFTKEGS---ISYGYKRVGDQIVFHVT 663

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG G+   ++ +  + F ++ N      +GTGLGL + K++V+   GK  + S    GT
Sbjct: 664 DTGTGIEPEKVGRVFERFAKLNN----HAQGTGLGLSICKSIVERLGGKITVNSEFGVGT 719

Query: 803 LIEIIFP 809
                 P
Sbjct: 720 TFNFTLP 726



 Score = 55.0 bits (131), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 34/275 (12%), Positives = 79/275 (28%), Gaps = 18/275 (6%)

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDI 360
           +Y       ++    ++      E      I  +VY+       N +      +  V   
Sbjct: 110 QYRDITQRSNVKRQLEQTNRTLREIQKVAQIGQWVYNT------NENVFHYLGHTGVLCE 163

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
           E    +S       + + +    +     +       +  + +Q N E    M    + +
Sbjct: 164 ETVRSISFEKYREYIVEEDRQTFINWKLRNLERFNTDSISYRVQVNGE-IYYMRIQAYLR 222

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
                 ++   G      D +  +  +      L   +    + I     +G I+  NR 
Sbjct: 223 EELPDGSLTIEGYIQNITDIQRRRNDI----NTLTHAINNAKESIFAAREDGTIIFANRR 278

Query: 481 VSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
                G      +   K + +  +  T    N    +I+       +        ++  +
Sbjct: 279 FLHNHGICENVDICKLKIYDIAADMPTQKAWNERCKDIMHGGSSNFIAHHPSKINRD--I 336

Query: 539 LSLRIIIKKLPFSSC---YSLTMHDISEWKQEKNK 570
           L+    +  +   S    Y    HDISE  + + +
Sbjct: 337 LAYEGTMYNVTNDSGEESYWSFAHDISERIRYEAQ 371



 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/186 (13%), Positives = 57/186 (30%), Gaps = 20/186 (10%)

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
             IL+ T+D + ++++ G+ +  +     L+    E +L K     L + T   +     
Sbjct: 14  QRILKLTADTMLLVDKNGVCIDIDPH-CDLWFLQDEILLGKNIFELLPEYTRERVVPVFQ 72

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA 574
            +L      +     +    +       +                DI++    K +L   
Sbjct: 73  SVLEGKKSVSKNFKLVLKE-DVYYFKCIMHPY----DDMVLCQYRDITQRSNVKRQLEQT 127

Query: 575 KKIAEKESS--HKSDFLA----RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
            +   +         ++      V H         +G + V+  +    +   +Y EY  
Sbjct: 128 NRTLREIQKVAQIGQWVYNTNENVFH--------YLGHTGVLCEETVRSISFEKYREYIV 179

Query: 629 YIDRSG 634
             DR  
Sbjct: 180 EEDRQT 185


>gi|254522090|ref|ZP_05134145.1| Two component regulator three Y motif family [Stenotrophomonas sp.
            SKA14]
 gi|219719681|gb|EED38206.1| Two component regulator three Y motif family [Stenotrophomonas sp.
            SKA14]
          Length = 1168

 Score =  293 bits (750), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 127/666 (19%), Positives = 238/666 (35%), Gaps = 58/666 (8%)

Query: 170  SRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS 229
             R  +        ++  +    D R  G+      +    I+   +      + + S   
Sbjct: 394  DRRGQVWIGSNDALLRYDPKLRDLRRWGRDAGADATMEGVIESMMTCDGDSLWLMLSS-- 451

Query: 230  PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYF 289
                L+ ++    L     +    L+  +  L                  L    + + F
Sbjct: 452  ---GLQQRDLDGRLRRQLDNGQRGLQQGQLNLDVECGPQDHIWLASSRGLLQWLPESERF 508

Query: 290  GTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLF-YANPSF 348
              +      +   L       +    D   +               +S G L   A    
Sbjct: 509  QPVPGAPATAIHALHVGRDGQVWLSEDGRLSRYR------------WSQGRLERQAVVGA 556

Query: 349  LLLTKYKSVDDI--EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
                   S   +  +  G          +      + V LY       +   R HT+  +
Sbjct: 557  EQGYPAISASGLVVDEQGVAWATSARGLVRIGTDGQSVRLYGVHDGLPSQEFREHTLVMS 616

Query: 407  RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG-- 464
             +    +   P       PE +  +      V  R+  R+ E        +L+ T D   
Sbjct: 617  GD-GHLVAGTPAGVVVFDPEQVRPSVRRAPLVIERVEVRRNEQ-------VLDLTHDAPL 668

Query: 465  -IAIINREGIILS---------TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
             IA  +R+  I++         +N    +L GY  + +   P    L    P        
Sbjct: 669  QIADGDRDLRIVARLLSFADSASNTYRYRLAGYDPDWVEVGPAGERLFSRLPPGSYRLEV 728

Query: 515  EILSLDLRQTLEKITLGSTKEEKLLSLR----IIIKKLPFSSCYSLTMHDISEWKQEKNK 570
            +  S D   +  +      +     SL     +    L  +S ++       + +     
Sbjct: 729  QARSADHVWSRVQSLEFRVQPPWWRSLSGLLVLASIALLLTSWFAWLYRRRLQRRHAYQL 788

Query: 571  LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
              H +++AE+ S+ K+ FLA + HEIRTP+T ++G SE++         +P+   Y   I
Sbjct: 789  ALHKQELAEQASAAKTRFLANLGHEIRTPMTGVLGMSELLLASPL----DPQQRGYTQSI 844

Query: 631  DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS- 689
              +G  +L +VND LD+++IESG++ L  +P +L   + +  +L+   A +K +      
Sbjct: 845  RHAGEHLLHLVNDALDLARIESGRLELQQKPFALSCLLQDLAALMGPLAAQKGLRFTLDN 904

Query: 690  -FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI---LRVRDTG 745
                 + +   D   V+QI LN+LSNA+ FT  G    I+    S+ E+      VRDTG
Sbjct: 905  QLPPGL-QATGDAMRVRQILLNLLSNAVKFTSRG---TITLHARSDGELRALHFEVRDTG 960

Query: 746  VGMTNYELEKAMKPFGQIPNSQQI-RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
             G++  + ++  + F Q   ++   +  G+GLGL + + +  A  G+  + S   +GT  
Sbjct: 961  PGISQEQQQRLFRRFEQADGARTAAQYGGSGLGLAICRELAQAMQGRIQVESQLGRGTCF 1020

Query: 805  EIIFPL 810
             +  PL
Sbjct: 1021 GVTLPL 1026


>gi|323139437|ref|ZP_08074486.1| PAS/PAC sensor hybrid histidine kinase [Methylocystis sp. ATCC
           49242]
 gi|322395308|gb|EFX97860.1| PAS/PAC sensor hybrid histidine kinase [Methylocystis sp. ATCC
           49242]
          Length = 638

 Score =  293 bits (750), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 88/496 (17%), Positives = 170/496 (34%), Gaps = 18/496 (3%)

Query: 322 TPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
               +D  P    V  H  +  A         +++      A   +  L   + +    I
Sbjct: 18  LRGAIDALPHQIAVLDHDGVVIAVNESWKRFAHENGASSRAAFVGADYLHNCRAAAETDI 77

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
             +         +A      +I++         +     A              E  D +
Sbjct: 78  YALRTLVGFGDILAGERDQFSIEYPCRAPGNERWFLMHAARVNQPPAAVVVSHTEITDRK 137

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV-EDILRKPFTVF 500
             +  +           +    G   +  +   L+ +    ++F       +    F   
Sbjct: 138 RMEEALRRGQEDFALAQQVGQIGWWRLETKKNELTWSDETRRIFDAEQVAPLTYDDFIAM 197

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL---- 556
           +  +  +++N      L+ +      +I  G      +  +R        ++        
Sbjct: 198 VHPDDRAIVNGRWDAALNGEAYDVEHRIFAG----GCVKWVREKAYLEFDAAGAVASAFG 253

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            + DI+E K  +  L             K +FLA ++HE+R PLT I     +++     
Sbjct: 254 IVQDITERKAAEAALRD-------ADRRKDEFLATLAHELRNPLTPIRNAVHLLRLNSET 306

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
           P    R       ++R  + ++ +V+DLL++S+I  GK+ L  E + L   +   +   Q
Sbjct: 307 PGRENRNPRLFEMVERQVSHLVRLVDDLLEVSRITRGKIELRKERLDLTALLRHVVDASQ 366

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
                    +R    +    + AD   + QI  N+L NA  +T +GG I + T       
Sbjct: 367 PAIQRGGHELRMDLPSAPLILDADPVRLSQIFTNLLDNAAKYTEAGGTITL-TAARQGAA 425

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
             + VRD GVG+    L +    F Q+  S      G G+GL L +++V+ + G     S
Sbjct: 426 ATISVRDNGVGIPAELLPRVFDIFTQVDRSLGRAQGGLGIGLALVRSLVEMHGGSVEADS 485

Query: 797 T-PAKGTLIEIIFPLY 811
               +G+   +  PL 
Sbjct: 486 AGLGRGSTFVVRLPLA 501


>gi|218676135|ref|YP_002394954.1| Signal transduction histidine kinase [Vibrio splendidus LGP32]
 gi|218324403|emb|CAV25798.1| Signal transduction histidine kinase [Vibrio splendidus LGP32]
          Length = 861

 Score =  293 bits (750), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 86/380 (22%), Positives = 170/380 (44%), Gaps = 25/380 (6%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            ++  +  +   +       I + + +G ++  N A  ++  +  +D         + + 
Sbjct: 353 ERLSEQHQKFQDLFNFAHSPILVWSEKGDLIQMNPAA-RMALFDEDDNYG-----AMARE 406

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISE 563
               M   +  ++       +          EK+    +   ++    +   +   DI++
Sbjct: 407 FELRMLPNIQMVVQGSKLTGINVPI-----GEKVFRWNMSAIRVEHGITGVVVQGQDITK 461

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + + +   A++ AE  +S ++DFLA++SHEIRTPL  I+G S+++K      + +   
Sbjct: 462 LIEAERQADRAREEAEHLASVRADFLAKMSHEIRTPLNGILGVSQLLKR----SIHDEDN 517

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            +  + +  S   +L ++ND+LD SKIE G+ N+  +   L E V+   S+ +    +K 
Sbjct: 518 RDQVDVLCHSAEHLLAVLNDILDFSKIEQGQFNIQKKDFLLGELVNTLDSIYRPLCEDKS 577

Query: 684 ILIRT--SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-----SNEE 736
           +         ++I +I  D   + QI  N+LSNA+ FT  G  I +S             
Sbjct: 578 VEFTIVNHLIDDI-KIHTDQVRLNQIMFNLLSNALKFTHQGS-ISVSFEIESILNTDFAS 635

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           +I+RV+D+G+G+   +++   +PF Q   +      G+GLGL + K +VD   G   + S
Sbjct: 636 LIVRVKDSGIGIDESKIDAIFEPFVQAEETTTREYGGSGLGLTIVKNLVDMLEGDIQVRS 695

Query: 797 TPAKGTLIEIIFPLYDTSHP 816
              +G+   I  P+   S P
Sbjct: 696 VKDQGSEFIIEIPVELHSKP 715


>gi|83312486|ref|YP_422750.1| sensor protein fixL [Magnetospirillum magneticum AMB-1]
 gi|82947327|dbj|BAE52191.1| Sensor protein fixL [Magnetospirillum magneticum AMB-1]
          Length = 481

 Score =  293 bits (750), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 77/404 (19%), Positives = 159/404 (39%), Gaps = 13/404 (3%)

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469
           ++ +  I   +         +  +  +    R  + ++     +L ++ E +  G+A   
Sbjct: 86  AVLVAVIGRMRDEMDRRRQAEQHLLEDMAGRREVEAELRSNEEKLRAMFEKSPLGMARNR 145

Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
            +G  L  N A   + GY +ED+    +               L  + +L      EK  
Sbjct: 146 VDGSFLEANPAFLGIVGYDIEDLRSLSYWDLTPVRFGQDEATQLERLEALGHYGPYEKEY 205

Query: 530 LGSTKEEKLLSLRIIIKKLPFSSC---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
           +   K+ + + +R+                 + DI+E +  +  L    +   + ++   
Sbjct: 206 I--RKDGRRVPVRLSGMLATGRDGESYIWSIVEDITESQAVERALMAKTEELARSNADLE 263

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
            F    SH++R PL  +  +   +  +RFGP+      EY  Y       +  +V DLL+
Sbjct: 264 QFAFIASHDLREPLRMVSAYM-GMLERRFGPVVGDEGAEYIAYAKEGAQRMDQLVLDLLE 322

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706
            S++  G+M    EPV L E V   ++ +     +    +       +P I A    + Q
Sbjct: 323 YSRV--GRMEEPLEPVPLGEVVDGVVANLSPAIAQYGASVECRSP--LPAIPAVRGEMAQ 378

Query: 707 IALNILSNAIHFTPSGGQIIIST-THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           +  N++ NA+ +      + +        E   + V D G+G++    E+  + F ++  
Sbjct: 379 LLQNLIGNAVKYREPSRPLRVVVSAVRDGEYWQISVADNGIGISPEFSERIFRIFQRLH- 437

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             +   EGTG+GL + K +V+ + G+ ++ S P +G+      P
Sbjct: 438 -TRDCFEGTGIGLAICKRIVERHGGRIWVNSVPGEGSTFTFTLP 480



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/326 (8%), Positives = 75/326 (23%), Gaps = 12/326 (3%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI-LHIDPNNHIGDLLKRQNTWYGKTTLW 150
            G   E +      +G     +  +   D++ +    D    +  L    +    +    
Sbjct: 147 DGSFLEANPAFLGIVGYDIEDLRSLSYWDLTPVRFGQDEATQLERLEALGHYGPYEKEYI 206

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
             +G    VP+ L+ +    R+ E      + IV                 ++ +  +  
Sbjct: 207 RKDGR--RVPVRLSGMLATGRDGE---SYIWSIVEDITESQAVERALMAKTEELARSNAD 261

Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270
            +  + +         +        ++ +   +      +      E    +      L 
Sbjct: 262 LEQFAFIASHDLREPLRMVSAYMGMLERRFGPVVGDEGAEYIAYAKEGAQRMDQLVLDLL 321

Query: 271 EQEDFHTINLNQYTKKQ---YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
           E      +              G + N S    +Y +     S             + + 
Sbjct: 322 EYSRVGRMEEPLEPVPLGEVVDGVVANLSPAIAQYGASVECRSPLPAIPAVRGEMAQLLQ 381

Query: 328 KC-PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
                               S +   +Y  +   +   G+S              +    
Sbjct: 382 NLIGNAVKYREPSRPLRVVVSAVRDGEYWQISVADNGIGISPEFSERIFR--IFQRLHTR 439

Query: 387 YRSDRTCIAASARLHTIQWNRENSLA 412
              + T I  +     ++ +      
Sbjct: 440 DCFEGTGIGLAICKRIVERHGGRIWV 465


>gi|289191732|ref|YP_003457673.1| integral membrane sensor signal transduction histidine kinase
           [Methanocaldococcus sp. FS406-22]
 gi|288938182|gb|ADC68937.1| integral membrane sensor signal transduction histidine kinase
           [Methanocaldococcus sp. FS406-22]
          Length = 631

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 67/248 (27%), Positives = 132/248 (53%), Gaps = 4/248 (1%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
             K+   +L  + +  ++    KS+ ++ VSHE+RTPLT+I G+ E++ +   G L N  
Sbjct: 387 ALKKHAKELEESYEKLKEVDRLKSEIISIVSHELRTPLTSIKGYVELVLDGLMGEL-NEN 445

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                     + + +  +++++LD+SKIESG +    + + + + ++E ++ +Q    EK
Sbjct: 446 QRRCLEIAKNNIDRLKRLIDNMLDLSKIESGAIKFDIKDIKVKDMINEVLNSLQPLTKEK 505

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
            I ++    +N+     D   + Q+ +N++ NAI F+P  G I I           + ++
Sbjct: 506 NIEVKCDIEDNL-TAKVDKDRIIQVLINLIENAIKFSPVKGVIEIH-AFRDKNYAHIIIK 563

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G G+   +LE+    F Q+ N  +I+ +G GLGL + K++++A+ GK ++ S   KG+
Sbjct: 564 DYGPGIPKKDLERIFDKFYQV-NFPKIKRDGAGLGLAICKSIIEAHGGKIWVESELGKGS 622

Query: 803 LIEIIFPL 810
              I+ P+
Sbjct: 623 AFHILLPM 630


>gi|291559470|emb|CBL38270.1| Signal transduction histidine kinase [butyrate-producing bacterium
           SSC/2]
          Length = 1068

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 92/469 (19%), Positives = 184/469 (39%), Gaps = 41/469 (8%)

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
           +        +   T +A   R   I  N E              +  ++        +  
Sbjct: 341 DRGYIAERLKGLETELALECR---ITLNGEERW---VRNVVIRGEIEDSEYAMIFLRDIT 394

Query: 439 DTRINKRK---MEIEVMQLCSILEATS---DGIAIIN-REGIILSTNRAVSKL---FGYP 488
           + ++   +   M  +   +  ++++     D   + +         N     +    G+ 
Sbjct: 395 EAKVESARHLQMAADNASMEQLIQSIVRLVDRFVVCDLENDRYEFYNLNGQMIYKPLGFY 454

Query: 489 VEDILR-----KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST--KEEKLLSL 541
            +  ++     K        +     ++   ++ S +     E  ++     K    + L
Sbjct: 455 HDFQMQVLEKYKTLEPLEAIDILIAPDNIRKKLKSENDIYKFEYCSMDEKTYKIASYIPL 514

Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK----ESSHKSDFLARVSHEIR 597
                KL       L   D+++ K+ + +   A K A +     +  K++FL+ +SH+IR
Sbjct: 515 EWKNGKLEK---VLLASMDVTQEKKAEIESRQALKEAYRSAENANRAKTEFLSNMSHDIR 571

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TP+ AI+G + +            R IE  + I  S   +L ++N++LD+++IESGKM L
Sbjct: 572 TPMNAIVGLTAIAGANI---ESQDRVIECLSKITESSRHLLGLINEVLDMARIESGKMTL 628

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAI 716
             E  +L + V   I++ +   +E +        +     +  D   ++Q+ +N++SNAI
Sbjct: 629 AQEDFNLSDLVDNLITITKPVLDEHKHNFDIHINHIEHEAVCGDSLRIQQVFVNLMSNAI 688

Query: 717 HFTPSGGQIIISTTHTSNEE-----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
            +TP GG I  S     N           + D G+GM+    +    PF +  + +  R 
Sbjct: 689 KYTPDGGNITFSIEEKPNGFSELGCYEFTIEDNGIGMSPEFQKIMFDPFSRADDHRTTRV 748

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGT--LIEIIFPLYDTSHPHD 818
           +GTGLG+ +++ +V+   G   + ST  KGT   + I   L +     D
Sbjct: 749 QGTGLGMAISRNIVNLMDGTIKVDSTLHKGTKITVTIYLELQEKEKEQD 797


>gi|159901042|ref|YP_001547289.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159894081|gb|ABX07161.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 492

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 90/401 (22%), Positives = 171/401 (42%), Gaps = 19/401 (4%)

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476
           P    ++  E      +  E   + ++ ++ E +     +IL A  DG+ + ++ G I+ 
Sbjct: 98  PNLGTDELGELAQSINLAAEHFTSLLDTQRRETQRE--RAILAAIDDGVIVCDQLGQIIL 155

Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
            N A   +      + L+                  +   L   L +   K         
Sbjct: 156 LNTAAYNIIAMAEAERLQTNHEQPNLSLRFYAALEAVQPALDQALGRPHIKPAERVCFAG 215

Query: 537 KLLSLRIIIKKLPFSS-CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
           +   L      +          + DIS   + +                +SDF+A  +HE
Sbjct: 216 RTYRLSANPIWIDDRRIGAVAILQDISARVESE--------------RLRSDFMALAAHE 261

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           +R+PLT+I GF++++               Y   I R+   + +++ND+++++++E+ + 
Sbjct: 262 LRSPLTSIRGFADMLLWSNPEHFSAEEI-SYIEGIGRNIQRLTELMNDVVELARLETQRN 320

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715
               +PV L + +S  +   +  A  K++ +     N +P +  D   ++QI+ +++SNA
Sbjct: 321 EHTPQPVDLRQVLSAVLDEFRPRAERKKLQLDCLLPNELPLLSLDPLHIRQISHHLISNA 380

Query: 716 IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           I +TP  GQI I      ++ +++ VRDTG+G++  E  +    F +  N       GTG
Sbjct: 381 IKYTPEQGQIQIEVQQRIDD-ILVVVRDTGIGISLREQPRIFGRFFRNDNPLSRAAGGTG 439

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           LGL +AKA+V+ N G  Y  S   +GT   + FPL     P
Sbjct: 440 LGLSIAKALVEMNHGSIYFESIEEEGTTFYVAFPLALVCEP 480


>gi|325921523|ref|ZP_08183376.1| putative periplasmic ligand-binding sensor domain [Xanthomonas
            gardneri ATCC 19865]
 gi|325547993|gb|EGD18994.1| putative periplasmic ligand-binding sensor domain [Xanthomonas
            gardneri ATCC 19865]
          Length = 1193

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 117/741 (15%), Positives = 233/741 (31%), Gaps = 63/741 (8%)

Query: 106  IGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAA 165
            +G          +   +         ++    +    W         +G  L   +D + 
Sbjct: 327  LGYLPADWKRSAVLKPAAPTGDAIYCNLAPATRSGGLW-----QVDTDGRLLR--VDPST 379

Query: 166  LPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF 225
               +    +    +G  +V           LG              +             
Sbjct: 380  GDTFQTGLQSPHLKGMELVSALEDRLQRVWLGNLSFGLSRMDLRTGEFIHWPSDGPEPAS 439

Query: 226  SQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTK 285
            +  +P   +   + V         + D+        +T ++           +      +
Sbjct: 440  ALSAPDWIIEQGDTVWMAFLDMVQQRDLRSGRVLQRITQQDLHGLSDIAVQQLEQGPDGR 499

Query: 286  KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYAN 345
                G         F +          A  +           + P   +VY         
Sbjct: 500  VWAAG-----EGGMFAWDDTSRRFVPVAGLEGTP--IQAFASQSPETVWVYRATGAEQWK 552

Query: 346  PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM-LYRSDRTCIAASARLHTIQ 404
             +    T+ + V + +   G               I  +  L+R D +     ARL  I 
Sbjct: 553  KTATGWTRVRHVGEADGLAGFDASAMQIDPHGRVWISSLRGLWRIDPSVTP--ARLRNIG 610

Query: 405  WNRE---NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
                          +              + +  +     I      +++  L  +    
Sbjct: 611  TRDGLTSQEFVQHCLLMAGDTLIGATSDGSTVLLDTAMPDIAPFVPALQLEHLSVLRNGA 670

Query: 462  SDGI-----AII---NREGIILSTNRAVSKLFGYP-VEDILRKPFTVFLEQNTPSVMNHY 512
               +       +   +R+  I+S      +L  Y        + F    +    +  N  
Sbjct: 671  RIALPMDRPFQLGPGDRQLQIVS------RLLSYSDPLSNRYRSFLKGFDTEWQTSGNAG 724

Query: 513  LTEILSLD----LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY-------------- 554
            + E  SL              LG+    + L   +                         
Sbjct: 725  IREFASLPAGNYELALQGVDPLGNRSPVRTLRFTVNPPWWRSDVGIALICLLGLLLSALL 784

Query: 555  SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
            +         + +     H +++AE+ S  K+ FLA + HE+RTP+T ++G SE++    
Sbjct: 785  AAAYRRRVRMRAQWQLAQHKRELAEQASQAKTRFLATLGHEVRTPMTGVLGMSELLLQTP 844

Query: 615  FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                 + R   YA+ I  +G  +L +VND LD+++IE+GK+ L +    L + + +   L
Sbjct: 845  L----DGRQQGYASAIQSAGKHLLRLVNDALDLARIEAGKLPLDYRDFDLRQLIRQVAEL 900

Query: 675  VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
            V+  A +K+++      + +P  +  D   V+QI LN+L NA+ FT  G  + +  +   
Sbjct: 901  VRPTAEQKQLVFECELEDALPPALHGDASRVQQILLNLLFNAVKFTERGS-VSLRVSVLP 959

Query: 734  NEE---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ-IRGEGTGLGLPLAKAMVDANM 789
                  + + VRDTG GM+  +  +  + F Q   +    R  G+GLGL + + +  A  
Sbjct: 960  QGHKQGIRMEVRDTGPGMSAEQRGRLFQRFEQAEGALTLARHGGSGLGLAICRELAAAMG 1019

Query: 790  GKFYIFSTPAKGTLIEIIFPL 810
            G+  + S   +G    +  PL
Sbjct: 1020 GEVTVSSELGRGACFVVELPL 1040


>gi|260773908|ref|ZP_05882823.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio metschnikovii
           CIP 69.14]
 gi|260610869|gb|EEX36073.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio metschnikovii
           CIP 69.14]
          Length = 855

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 82/372 (22%), Positives = 158/372 (42%), Gaps = 25/372 (6%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           ++  +  Q   +   +     +   +G ++  N +    F      +        L    
Sbjct: 352 QLAEQEKQFEDLFNFSLSPTLLWTAQGGLIRMNPSAEAYF------LSHYSQQHSLFARV 405

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM---HDIS 562
              +   + +    ++ + L+        + K +   +    L         +    DI+
Sbjct: 406 KPQLIIAVQQAAQGNIVKALKTEF-----DGKTILWELSPIIL--DERIVSIITQGQDIT 458

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
              + + +   A++ AE+ +  ++DFLA++SHE+RTPL  I+G S+++K           
Sbjct: 459 SMVEAEQQSRLAREQAEESARLRADFLAKMSHELRTPLNGILGASQLLKQNSL----TQE 514

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             E  N +  SG  +L ++ND+LD SKIE GK  +      +   VS    +      EK
Sbjct: 515 QQELVNVLCSSGEHLLAVLNDILDFSKIEQGKFLIQNSDFPVVAMVSAIRRIYNPLCKEK 574

Query: 683 RILIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV---I 738
            + +    A     R+ +D   + QI  N+LSNA+ FT  G  I I         +   +
Sbjct: 575 GLELIIECAIEPEIRLHSDQIRLNQILFNLLSNAVKFTHQGS-ICIKLALIQQGGIDKLM 633

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           + + DTG+G+   +L++   PF Q  ++      G+GLGL +  ++V+   G+  + S  
Sbjct: 634 ISIEDTGIGIAATDLQRIFAPFVQAESTTTREYGGSGLGLSIVSSLVELLHGEITVKSEV 693

Query: 799 AKGTLIEIIFPL 810
             GT  +++FP+
Sbjct: 694 GYGTRFDLLFPI 705


>gi|296101519|ref|YP_003611665.1| phosphate regulon sensor protein [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295055978|gb|ADF60716.1| phosphate regulon sensor protein [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 431

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 75/427 (17%), Positives = 155/427 (36%), Gaps = 37/427 (8%)

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             +L       I     L  + W     L +                  G+    +  + 
Sbjct: 33  WFLLASVTGLLIWHFWNLLRLSW----WLWVDRSMTPPPGSGSWEPLLYGLHQMQMRNKK 88

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            +R++   + +  S  E+  D + +   EG I   N    +L G    D   +     L 
Sbjct: 89  RRRELGSLIKRFRSGAESLPDAVILTTEEGTIFWCNGLAQQLLGLRWPDDNGQNILNLLR 148

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
               +              ++   +         + L +R++         + +   D++
Sbjct: 149 YPEFTQYL----------KKRDFTRPHNLKLNNGRHLEIRVMPY---SDRQWLMVARDVT 195

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  Q +                + +F A VSHE+RTPLT + G+ E+++ Q        +
Sbjct: 196 QMHQLEG--------------ARRNFFANVSHELRTPLTVLQGYLEMMQEQTLEGAPREK 241

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                + +    + +  +V  LL +SKIE+       + + +   +       Q  +++K
Sbjct: 242 A---LHTMREQTHRMEGLVKQLLTLSKIEAAPTLALNDTIDVPMMLRVVKREAQTLSHKK 298

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
              +     N++ ++L     ++    N++ NA++ TP G  I++    T        V 
Sbjct: 299 H-HLTFDVDNSL-KVLGSEDELRSAISNLVYNAVNHTPEGTDIMVRWQQTPTG-AEFSVE 355

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G G+    L +  + F ++  ++  +  G+GLGL + K  V+ +  +  I ST  KGT
Sbjct: 356 DNGPGIAPEHLPRLTERFYRVDKARSRQTGGSGLGLAIVKHAVNHHESRLDIQSTLGKGT 415

Query: 803 LIEIIFP 809
               + P
Sbjct: 416 RFSFVIP 422


>gi|34557246|ref|NP_907061.1| sensory transduction histidine kinase [Wolinella succinogenes DSM
            1740]
 gi|34482962|emb|CAE09961.1| SENSORY TRANSDUCTION HISTIDINE KINASE [Wolinella succinogenes]
          Length = 1555

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 82/257 (31%), Positives = 130/257 (50%), Gaps = 9/257 (3%)

Query: 553  CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
             +      ++E+ +    L  AK+ AE  +  KS+FLA +SHEIRTP+ AIIG + + + 
Sbjct: 824  GFFYWNRKLTEYNKA---LQAAKEKAEAATQEKSNFLANMSHEIRTPMNAIIGMTYLAQQ 880

Query: 613  QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
                PL      +Y   I+ S N +L ++ND+LD SKIE+GK+ +      L   +    
Sbjct: 881  TDLTPL----QRDYLQKIEGSANALLGLINDILDFSKIEAGKLEIECIDFDLHSVIEHVS 936

Query: 673  SLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
            +LV+L A EK +    S+   +   +  D   + QI  N+ +NAI FT  G ++ I  T 
Sbjct: 937  TLVELKATEKNLEFVVSYDQGMNMNLHGDPLRLGQILTNLANNAIKFTHEG-EVGIYITK 995

Query: 732  TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
                     VRDTG+G++  + EK  + F Q   S   +  GTGLGL ++K +V+   G+
Sbjct: 996  QELHRYRFEVRDTGIGLSPGQKEKLFRSFSQADTSTTRQYGGTGLGLAISKQLVEMMNGR 1055

Query: 792  FYIFSTPAKGTLIEIIF 808
             ++ S   KG+      
Sbjct: 1056 IWVESEEGKGSSFIFEI 1072


>gi|224371576|ref|YP_002605740.1| BarA [Desulfobacterium autotrophicum HRM2]
 gi|223694293|gb|ACN17576.1| BarA [Desulfobacterium autotrophicum HRM2]
          Length = 941

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 78/257 (30%), Positives = 125/257 (48%), Gaps = 10/257 (3%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E +   +K       A+  S  KS FLA +SHEIRTP+  ++G +E+  +          
Sbjct: 252 ELQLTMDKAIVLADEAQAASKAKSQFLANMSHEIRTPMNGVLGMAEMALDMNLTL----E 307

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                  I  SG  +L I+ND+LD SKIE+GK+ +     +L   + E   ++   A+ K
Sbjct: 308 QQNAIETIKSSGESLLTIINDILDFSKIEAGKLEIETINFNLPALIEEIAQILAHRAHAK 367

Query: 683 RILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT----HTSNEEV 737
            + +    A  + P + +D   ++Q+  N+LSNAI FT  G ++ +          +E+V
Sbjct: 368 GLELIVDIAETLHPDMSSDPSRIRQVLTNLLSNAIKFTEQG-EVYLKVESLKDMGDSEQV 426

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
              VRDTG+GMT  E +K  +PF Q   S   +  GTGLGL +++ +V+   G+      
Sbjct: 427 RFLVRDTGIGMTAEERKKLFQPFSQADESTTRKYGGTGLGLAISRQLVELMDGQINCTGN 486

Query: 798 PAKGTLIEIIFPLYDTS 814
           P +G        L  T+
Sbjct: 487 PGEGAEFWFDLTLKKTA 503


>gi|207855880|ref|YP_002242531.1| phosphate regulon sensor protein [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|206707683|emb|CAR31967.1| phosphate regulon sensor protein PhoR [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
          Length = 431

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 72/427 (16%), Positives = 155/427 (36%), Gaps = 37/427 (8%)

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             +L       +     L  + W     L +         +        G+    +  + 
Sbjct: 33  WFLLAAVTGLLVWHFWNLLRLSW----WLWVDRSMTPPPGRGSWEPLLYGLHQMQLRNKK 88

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            +R++   + +  S  E+  D + +   EG I   N    ++ G    D   +     L 
Sbjct: 89  RRRELGNLIKRFRSGAESLPDAVVLTTEEGGIFWCNGLAQQILGLRWPDDNGQNILNLLR 148

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
               +               +   +         + L +R++           +   D++
Sbjct: 149 YPEFTQYL----------KTRDFTRPLHLVLNTGRHLEIRVMPY---TDKQLLMVARDVT 195

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  Q +                + +F A VSHE+RTPLT + G+ E+++ Q        +
Sbjct: 196 QMHQLEG--------------ARRNFFANVSHELRTPLTVLQGYLEMMQEQALEGATREK 241

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                + +      +  +V  LL +SKIE+    L  E V +   +       Q  + +K
Sbjct: 242 A---LHTMREQTYRMEGLVKQLLTLSKIEAAPALLLNEKVDVPMMLRVVEREAQTLSQQK 298

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
                    +++  +L +   ++    N++ NA++ TP+G  I +S     +      ++
Sbjct: 299 H-TFTFEVDDSL-SVLGNEEQLRSAISNLVYNAVNHTPAGTHITVSWRRVVHG-AEFCIQ 355

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G G+    + +  + F ++  ++  +  G+GLGL + K  ++ +  +  I S+P KGT
Sbjct: 356 DNGPGIAAEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHALNHHESRLEIDSSPGKGT 415

Query: 803 LIEIIFP 809
               + P
Sbjct: 416 RFSFVLP 422


>gi|218438402|ref|YP_002376731.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7424]
 gi|218171130|gb|ACK69863.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7424]
          Length = 831

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 110/814 (13%), Positives = 235/814 (28%), Gaps = 115/814 (14%)

Query: 87  WNID---AHGYLKEISEELPKTIGNYAFKMIGMRLC----------DVSDILHIDPNNH- 132
           W +     +G + EI++      G      I               +  D  H+ P  H 
Sbjct: 35  WAMGLLYPNGIVLEINQTALDFEGLTEEDRINCPFWQAQGWSKAQEEYLDTDHLSPTQHY 94

Query: 133 IGDLLKRQNTWYGKTTLWPIEGT---NLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRV 189
           +   +       G+     +E     +    ++L   P+ +   E       G       
Sbjct: 95  LKAAIASSAK--GEIVQCQVEVRKKDHQITTVELTFKPVVNEQGEVILLIFQG--RDMTT 150

Query: 190 DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP------------------ 231
           +N+  A     ++++  + +                 Q                      
Sbjct: 151 ENNLEAKLLESEERWQLILQGTGDGIFDWNIITGEVYQSPWLKEMLGYQEQDMANTYEKW 210

Query: 232 -PHLRMKNKVSSLTEYYAHKDD--------------------VLKTEKYPLLTSEESSL- 269
              +   +    L +  AH                       +L   +       +    
Sbjct: 211 KNLVHPDDIEGVLAQIQAHLTQKTSRYLAEYRMRCADGTYKWILARGQAKWDEKGQPIRM 270

Query: 270 -PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP-----SLSAYFDEGENLTP 323
               +D       +   ++    L+   +     L   N                  L  
Sbjct: 271 VGFNQDISRQKEAEAEIQRLNQELEERVQHRTAQLEAANRQKDEFLRSERQAKAQIQLYQ 330

Query: 324 ETVDKCPIPFFVYSHG--------NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
           + V+   I   V+            L  ANP+   L      +  +    L   L    +
Sbjct: 331 DIVENIQIGLIVWRLDDPNDKGSFRLIAANPAANDLIGTSLKECFDHR--LDQCLPNAFI 388

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
           S    ++        +   A     +T        L +   P                  
Sbjct: 389 SHPIILEAHAEVIRTQQAQAIPKFTYTHPQGGTKILTLKLFPLPDN-------CVGVAFE 441

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
           +    +  ++ +     +   ++ +  + I   +  G     N A +++ GY + + L  
Sbjct: 442 DITQRKQTEKALVGSTRRYRLVVNSVKEIIFQTDLNGCWTFLNPAWTEITGYTIIESLNH 501

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-- 553
            FT F+           + + L    R+  +      TK+E    L +  +         
Sbjct: 502 HFTDFIFAPDDRQQCDQMFQELIEGKREVFQTEFRCQTKDENFRWLEMTAQLSQDEEAEN 561

Query: 554 ---YSLTMHDISEWKQEKNKLSHAKKIAEK--------------ESSHKSDFLARVSHEI 596
                 T++D++E K+ +  L        +               +     F    SH++
Sbjct: 562 NYTILGTINDVTERKRTEAILQARANELIRLNTVLLTTTAQLEKRNHELDQFAYVASHDL 621

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           + PL AI   S  ++      L +         +    + +  ++N LL  S++  G++ 
Sbjct: 622 KAPLRAIANLSVWLEEDLRDKL-DEDTRYQMELLRGRVHRMEALINGLLQYSRV--GRLK 678

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716
              E +++++ + E I  +           +      +P ++     ++Q+  N+L NA+
Sbjct: 679 GQAEVINVEQLLKEVIDSLAPPPE-----FKIDIKGQMPTLVTQPFPLRQVFANLLGNAL 733

Query: 717 HFTPSG-GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
               +  G I IS      +     VRD G G+     +K    F  +    + + E TG
Sbjct: 734 KHHHNHRGHIEIS-AQEHEQFYQFSVRDDGPGIDPLYHDKIFNIFQTLEA--RDKTENTG 790

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +GL + K  V+   G  ++ S   +GT     +P
Sbjct: 791 IGLSIVKKTVETQKGTIWVESQLGQGTTFHFTWP 824



 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/261 (8%), Positives = 73/261 (27%), Gaps = 5/261 (1%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCD-VSDILHIDPNNHIGDLLKRQNTWY 144
            +  D +G    ++    +  G    + +     D +         + +   L       
Sbjct: 471 IFQTDLNGCWTFLNPAWTEITGYTIIESLNHHFTDFIFAPDDRQQCDQMFQELIEGKREV 530

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            +T          +  +++ A        E + +   G ++         A+ +    + 
Sbjct: 531 FQTEFRCQTKDENFRWLEMTAQLSQDEEAE-NNYTILGTINDVTERKRTEAILQARANEL 589

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
             L+ +    ++  +++     Q +      +K  + ++       ++ L+ +       
Sbjct: 590 IRLNTVLLTTTAQLEKRNHELDQFAYVASHDLKAPLRAIANLSVWLEEDLRDKLDEDTRY 649

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
           +   L  +       +N   +    G L+  ++        +      A   E +    +
Sbjct: 650 QMELLRGRVHRMEALINGLLQYSRVGRLKGQAEVINVEQLLKEVIDSLAPPPEFK---ID 706

Query: 325 TVDKCPIPFFVYSHGNLFYAN 345
              + P            +AN
Sbjct: 707 IKGQMPTLVTQPFPLRQVFAN 727


>gi|229070093|ref|ZP_04203360.1| hypothetical protein bcere0025_22890 [Bacillus cereus F65185]
 gi|228713007|gb|EEL64915.1| hypothetical protein bcere0025_22890 [Bacillus cereus F65185]
          Length = 590

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 88/507 (17%), Positives = 179/507 (35%), Gaps = 41/507 (8%)

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
               +      E      +   P+    +  +G+    N    ++T Y + + I     L
Sbjct: 96  QSKSTTLLSRKEEELHTILQNMPVMVDALDYNGDFVLWNRECEIVTGYTAEEIIGNPNAL 155

Query: 367 STLLDAPKLSDNNAIKPVM----LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
             L            K +         +      +  + TI W+                
Sbjct: 156 QLLYPDYNYRHQIQKKFLTCGKNFRDWEMHLTCKNGEIKTIMWSN-----------ISEQ 204

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
                     +  +    +  + +++ +  +L  I +A  D   +   +G I+       
Sbjct: 205 FPVTGYSYWAVGVDITHLKAIEEQLKQQTSELELIFKALPDLCFLTEDDGTIIDYKAGSP 264

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
             F  P E  + K F   L  +        + ++        +E           +    
Sbjct: 265 TKFYVPAEAFMGKKFYEVLPSSVAQQFQEAINQVKEKGTNVIVEYPLTL---NGSIDFFE 321

Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
                L +     + + DI+E K+ +  L+ +  +A           A V+HE+R PLT 
Sbjct: 322 ARCLPLLYDK-IMIIVRDITERKKTEELLNKSDTLA-----AIGQLAAGVAHEVRNPLTV 375

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           I GF +         +      +Y + +      +  I+ + L I+K +     ++ E  
Sbjct: 376 IKGFIQ------LFQINKEDQEKYFDLMLSEIERIEAILQEFLAIAKTD----EINTEKK 425

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
           ++ +     +SL+   A    I +     +    I      +KQ+ +NIL N+I   P+G
Sbjct: 426 NIYQIFKNVVSLMNTKAIMTNIQVELFTDDKDIIIECSENQLKQVFINILQNSIEAMPNG 485

Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
           G+I I     +++ VI+ V D G+G+    +++  +PF         + +GTG+GL L+ 
Sbjct: 486 GEISIHIKEINDDGVIIYVIDEGIGIPEERIKRLGEPFY------STKEKGTGIGLMLSY 539

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFP 809
            +++++ G   I S    GT + I  P
Sbjct: 540 KIIESHQGTISIMSEVGVGTTVTIYLP 566


>gi|309791779|ref|ZP_07686267.1| histidine kinase [Oscillochloris trichoides DG6]
 gi|308226185|gb|EFO79925.1| histidine kinase [Oscillochloris trichoides DG6]
          Length = 861

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 84/255 (32%), Positives = 139/255 (54%), Gaps = 11/255 (4%)

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           Q   +L  A + A+     KSDFL  +SHE+RTPL AIIGFS V+ ++  GPL  P   E
Sbjct: 610 QRTEELRAALEKAQLADRRKSDFLTGISHELRTPLNAIIGFSTVLIDELDGPLA-PMQRE 668

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
            A  I+R+G  +L ++N+LLD+++IE+G ++L    V L   VSE +  +Q      ++ 
Sbjct: 669 DAQSINRNGRFLLHLINELLDLARIEAGHLDLDLGRVDLAPLVSEVLDTMQGLLRSGQVS 728

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN--------EEV 737
           +  +   ++P + AD   ++QI  N+LSNA+ FT  G  I +S                V
Sbjct: 729 LNQNLPADLPAVCADADRIRQILFNLLSNAVKFTERG-TITVSANLRDEIGPDGNAQSMV 787

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
           ++ +RDTG+G+      +  + F Q+ + +  R  GTGLGL + + +V+A+ G  ++ S+
Sbjct: 788 VMHIRDTGIGIPANRQHEIFEEFVQVHDKRLRR-RGTGLGLAIVRRLVEAHQGHIWVESS 846

Query: 798 PAKGTLIEIIFPLYD 812
           P +G+      P+  
Sbjct: 847 PNEGSTFSFSLPIAR 861


>gi|304312202|ref|YP_003811800.1| sensor histidine kinase/response regulator [gamma proteobacterium
           HdN1]
 gi|301797935|emb|CBL46157.1| sensor histidine kinase/response regulator [gamma proteobacterium
           HdN1]
          Length = 913

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 76/259 (29%), Positives = 122/259 (47%), Gaps = 9/259 (3%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I +      +L  + +        +S+FLA +SHEIRTP+  ++G  E+++N       N
Sbjct: 512 IQQLDTSNRQLDKSNQELAAAIQARSEFLANMSHEIRTPMNGVLGMLELVENANL----N 567

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
               +      RSG  +L ++ND+LD+SKIESGK+ L   P SL + +S+   L      
Sbjct: 568 DVQKQQLEIARRSGQTLLALINDILDLSKIESGKLALESLPFSLQDFLSDLRELYGKQLR 627

Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE--- 736
           EK I    + A ++P  +  D   + Q+  N++SNA+ FT  GG + IS       +   
Sbjct: 628 EKNITCTLACAEDVPEWVAGDRIRLWQVLTNLVSNAVKFTKDGG-VTISVNLLQEGQEER 686

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           +  +V DTG+G+      K    F Q   S   +  GTGLGL +A+ ++    G   + S
Sbjct: 687 LSFQVTDTGIGIPKAAQAKIFDSFSQADGSTTRKYGGTGLGLTIAQNLLKLMGGAISVRS 746

Query: 797 TPAKGTLIEIIFPLYDTSH 815
              +G+      PL     
Sbjct: 747 EEGEGSTFAFSMPLLRAEA 765


>gi|228990587|ref|ZP_04150552.1| hypothetical protein bpmyx0001_13490 [Bacillus pseudomycoides DSM
           12442]
 gi|228996688|ref|ZP_04156325.1| hypothetical protein bmyco0003_12740 [Bacillus mycoides Rock3-17]
 gi|228763007|gb|EEM11917.1| hypothetical protein bmyco0003_12740 [Bacillus mycoides Rock3-17]
 gi|228769113|gb|EEM17711.1| hypothetical protein bpmyx0001_13490 [Bacillus pseudomycoides DSM
           12442]
          Length = 591

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 81/371 (21%), Positives = 153/371 (41%), Gaps = 39/371 (10%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            ++ E  QL SIL + +DG+  +N+E  ++  N           E+       + L +N 
Sbjct: 249 ALQQEKEQLSSILSSMADGVVTLNQECEVVVINPPAEHFLQVWQEEK-----ELELSRNL 303

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
           P  +      ++  + +Q +E        +   + L   +            + D++E +
Sbjct: 304 PPELVELFHLVVESEQQQVIEINLQ----KGNYVVLMTPLYNQTKIRGAVAVLRDMTEER 359

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + +                + DF+A VSHE+RTP+  + G+SE I +            E
Sbjct: 360 RLE--------------KMRQDFIANVSHELRTPMVMLQGYSEAILDDIVQT--KEEINE 403

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           +   I      +  +VN+LLD++++ESG + LH   V +   V +     Q  A EK + 
Sbjct: 404 FVQIIYDESVRLGRLVNELLDLARMESGHVELHISEVDIHPFVEKIGRKFQGIAKEKNVR 463

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +   F N I +   D   ++Q+  N++ NAI  T +GG + +     +N  ++  V+D+G
Sbjct: 464 LTVDFRNPIEQHSFDPDRMEQVLTNLIDNAIRHTNAGGHVELIIDTKNNG-LMFEVQDSG 522

Query: 746 VGMTNYELEKAMKPFGQIPNS-------QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
            G+   ++      F +   +           G        +AK +V  + GK  I S  
Sbjct: 523 AGIPEEDIPFLFDRFYKADKARTRGKTGGTGLGL------AIAKNIVQGHNGKVSISSVV 576

Query: 799 AKGTLIEIIFP 809
            +GT+  +  P
Sbjct: 577 GEGTIFSVYLP 587


>gi|205351710|ref|YP_002225511.1| phosphate regulon sensor protein [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205271491|emb|CAR36309.1| phosphate regulon sensor protein PhoR [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|326626743|gb|EGE33086.1| phosphate regulon sensor protein [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 431

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 72/427 (16%), Positives = 155/427 (36%), Gaps = 37/427 (8%)

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             +L       +     L  + W     L +         +        G+    +  + 
Sbjct: 33  WFLLAAVTGLLVWHFWNLLRLSW----WLWVDRSMTPPPGRGSWEPLLYGLHQMQLRNKK 88

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            +R++   + +  S  E+  D + +   EG I   N    ++ G    D   +     L 
Sbjct: 89  RRRELGSLIKRFRSGAESLPDAVVLTTEEGGIFWCNGLAQQILGLRWPDDNGQNILNLLR 148

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
               +               +   +         + L +R++           +   D++
Sbjct: 149 YPEFTQYL----------KTRDFTRPLHLVLNTGRHLEIRVMPY---TDKQLLMVARDVT 195

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  Q +                + +F A VSHE+RTPLT + G+ E+++ Q        +
Sbjct: 196 QMHQLEG--------------ARRNFFANVSHELRTPLTVLQGYLEMMQEQALEGATREK 241

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                + +      +  +V  LL +SKIE+    L  E V +   +       Q  + +K
Sbjct: 242 A---LHTMREQTYRMEGLVKQLLTLSKIEAAPALLLNEKVDVPMMLRVVEREAQTLSQQK 298

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
                    +++  +L +   ++    N++ NA++ TP+G  I +S     +      ++
Sbjct: 299 H-TFTFEVDDSL-SVLGNEEQLRSAISNLVYNAVNHTPAGTHITVSWRRVVHG-AEFCIQ 355

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G G+    + +  + F ++  ++  +  G+GLGL + K  ++ +  +  I S+P KGT
Sbjct: 356 DNGPGIAAEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHALNHHESRLEIDSSPGKGT 415

Query: 803 LIEIIFP 809
               + P
Sbjct: 416 RFSFVLP 422


>gi|329889024|ref|ZP_08267367.1| response regulator [Brevundimonas diminuta ATCC 11568]
 gi|328844325|gb|EGF93889.1| response regulator [Brevundimonas diminuta ATCC 11568]
          Length = 1127

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 106/647 (16%), Positives = 226/647 (34%), Gaps = 35/647 (5%)

Query: 176 SGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI-------KKGHSSVEKEKYDIFSQQ 228
           +G RG+ +    +      A  + L ++   + ++       +     + +      ++ 
Sbjct: 59  TGQRGYLLTGDLQYLQPYEAASRDLARRLDEVGDLTKDSPTQQAHLRQLRRHIDAKMAEL 118

Query: 229 SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288
                 R    + +     A      + +      +      ++     +N      +  
Sbjct: 119 GATLQTRRTEGMQAALARMATDQGKREMDAVRAQITLLRQEEQRVRQLRLNEMDAAYRTA 178

Query: 289 F--GTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF----FVYSHGNLF 342
              G L      +   +        +      E L    V                 ++ 
Sbjct: 179 LISGVLSGLLGAALTLVVFTLIRRSAQARARQEWLHEGQVGLAAAMMGDQSLEQLADSIL 238

Query: 343 YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT 402
                       ++    +  GGL   + A  +  +  I        +      +A    
Sbjct: 239 ---AYLGRYAGVQAGALFKGEGGLYRRVAALGVPSDAPIAE-RFGLREGLLGQVAAEGQV 294

Query: 403 IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
           +  +      +T       ++    +         V+  +    +     +L ++LE   
Sbjct: 295 LTLSDVPEGYLTIGSALGRDKPRHLVLAPARADGAVNAVLELGFLHAPDERLMALLEEAG 354

Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522
             I    R     +  + + +      E++  +   + +           L E  +   +
Sbjct: 355 PAIGTALRSARYRAQLQNMLEETQRQAEELQVQSEELRVSNEELEEQGRALKESQTRLEQ 414

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES 582
           Q  E                    +L   +    T  D  + ++  + L+   +  E+ S
Sbjct: 415 QQAELEQ--------------TNSQLEEQAQLLETQRD--DLERGASALTLKARELEQAS 458

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
            +KSDFLA +SHE+RTPL +++  S+++ +   G L     + YA  I  SGN +L ++N
Sbjct: 459 QYKSDFLANMSHELRTPLNSLLILSKLLADNPEGTLS-EDQVNYARTIQSSGNDLLALIN 517

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702
           D+LD+SKIE+G +    E VS+     +   L Q  A+++ +            +  D +
Sbjct: 518 DILDLSKIEAGHIQARPEAVSMQRLTEDVRQLFQPVADDRGLAFDIELDAGADLMETDRQ 577

Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
            ++QI  N+LSNA  FT SG ++ +S +    + +   V DTG+G++  + +     F Q
Sbjct: 578 RLEQILKNLLSNAFKFTESG-KVKLSISAQPGDRIAFAVSDTGIGISPEQQKGVFDAFQQ 636

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
              +   R  GTGLGL +++ +     G+  + S   +G++  +  P
Sbjct: 637 ADGTISRRYGGTGLGLSISRELARLLGGRIRLESRLGEGSVFTLSLP 683


>gi|303246010|ref|ZP_07332292.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           fructosovorans JJ]
 gi|302492793|gb|EFL52661.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           fructosovorans JJ]
          Length = 403

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 83/394 (21%), Positives = 157/394 (39%), Gaps = 31/394 (7%)

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
              +       +    +      ++ +IL+  +D + ++  +  ILS N    ++F  P 
Sbjct: 22  FQELRQTIEALKDANTQSSQRRREIAAILDGITDIMMVLTPDLRILSVNHVFRQVFPDPA 81

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
            +   K              N       +      + + T       K +   ++   + 
Sbjct: 82  PE--GKFCYEIFRGENHPCPNCPAQRSFATG---DICRETAIFKINGKNIQFEMVASPIH 136

Query: 550 F----SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
                     +   D++  K+ + K   A+K+A             V+HE+  PLTAI G
Sbjct: 137 HPDDPEQHILVFKRDVTREKEYQAKFYQAEKMATIGM-----LATGVAHEVNNPLTAIFG 191

Query: 606 FSEVI------KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           F+E +        +   P       +Y   I +      DIV  LL  S+       + F
Sbjct: 192 FAEGLRRRLPTLRETVDPAVMDDVEDYVTTILQECRRCQDIVTTLLTFSR----HKTVSF 247

Query: 660 EPVSLDEAVSEAISLVQLYANEKR---ILIRTSFANNIPRILADLRSVKQIALNILSNAI 716
            PVSL+  V + + L++ +  ++    I +RT    ++P +  D   +KQ+ LN+L NA+
Sbjct: 248 SPVSLNAVVEDTLKLLRSHLRQRNQAKITVRTELCEDLPMVSGDEHQIKQVMLNLLVNAM 307

Query: 717 HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
                 G III+T   ++  V L V D+G G+    ++K  +PF          G+G G+
Sbjct: 308 DAIVGPGHIIITTFQEASGAVCLSVEDSGCGVPKENMDKLFEPFFTTK----RAGKGIGI 363

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           GL     +V+ + G+  + S P +G++  +  P+
Sbjct: 364 GLSTCMTIVNKHQGEITVKSKPGEGSVFIVKLPV 397


>gi|265764264|ref|ZP_06092832.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
 gi|263256872|gb|EEZ28218.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
          Length = 1022

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 123/741 (16%), Positives = 240/741 (32%), Gaps = 49/741 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGN-YAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQNTW 143
            W  D    L     E     G      +                   I  D+L   +  
Sbjct: 156 LWEFDVRTRLFYA--ENEPLNGYDPTQALTIEDYKKQIHPEDWKKAEIILLDMLSGCDCL 213

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPI-YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
           Y       +  T+ +    L   P     + +   + GF      R +N      K L +
Sbjct: 214 YEIDFRIRLSDTSEWQYCKLNCTPYERGTDGKVIKYVGF------RKNNTELQRRKLLQE 267

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
              +   +      VE +   +F  +            +  +   + + + ++     + 
Sbjct: 268 NILNSIPLPIHIKDVEDDFRYVFCNEESMRMFGTHEGETVCSVLDSEQAERMQKTDLEVF 327

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
           T+ +     +     I  +  +                  L+ R    L         + 
Sbjct: 328 TTGKPYFGVE---RIILKDGRSYDTIVRKNIIYDGTKRLLLNIRWDQKLQNDLKRRAKVL 384

Query: 323 PETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
             +++      + Y       +           +++              P         
Sbjct: 385 SMSMEVMNAYTWFYEPSKQRVSFGEGFDKIGRNALEINSFEKFAEC--VHPDDRQRFVDT 442

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
              + + D        R                +              +G+       + 
Sbjct: 443 MDAVLKQDSGEWDIEYRADLRGNGNYEWWKTRGVLETSILNDHPYQYVSGMSISIESYKQ 502

Query: 443 NKRKMEIEVMQL-------CSILEATSDGIAIINREGIILSTN----RAVSKLFGYPVED 491
            +  +     +L         +L  T+ G+A I  + ++   N     +      Y   +
Sbjct: 503 TELTLLKNKEKLNKLIRQNELVLNNTNSGLAYITTDYVVQWENVSVCSSSLSFEAYKRGE 562

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
              K            V++  L       ++  LE          +++ +          
Sbjct: 563 CCYKSAHNRTSPCDNCVLSKVLVSRQMEKIKFHLE--------NNRIVEVLATPVFNESE 614

Query: 552 --SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                 + + DI++ ++   +L  AK +AE+    KS FLA +SHEIRTPL AI+GFS++
Sbjct: 615 EIDGIVIRVDDITDRERMIEELRQAKLLAEQSDKLKSAFLANMSHEIRTPLNAIVGFSDL 674

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           + N            EY   I+ +  L+L ++ND+LD+SK+ESG + L +E   L E   
Sbjct: 675 LMNSEEQGDKE----EYMQIINTNNELLLKLINDILDLSKLESGSVELKYEEFDLAEYFD 730

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
              S ++      ++ +      ++ R+  D   V Q+  N ++NAI +TP G    I  
Sbjct: 731 SMASSMKQRVTNPKVQLVAVNPYSVCRVRLDKNRVAQVVTNYVTNAIKYTPQG---TIEM 787

Query: 730 THT-SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
            +   +  + L VRDTG+G+   +  K    F ++        +GTGLGL + KA+ ++ 
Sbjct: 788 GYEVVDAGIRLYVRDTGIGIPEEKKRKVFHRFEKLD----EFAQGTGLGLSICKAITESM 843

Query: 789 MGKFYIFSTPAKGTLIEIIFP 809
            G     S  ++G+L   + P
Sbjct: 844 GGSVGFESEYSRGSLFWAVLP 864



 Score = 44.6 bits (104), Expect = 0.061,   Method: Composition-based stats.
 Identities = 19/143 (13%), Positives = 46/143 (32%), Gaps = 10/143 (6%)

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRKPFTVFLEQNTPSVMNHYL 513
            +I E    G+ + + +G ++  N    K+ G    +D+L          N P  M   L
Sbjct: 16  QTIYENLPVGMELYDGDGYLIEINSVGLKMMGVKDKQDMLGINIFE--NPNIPVEMKRRL 73

Query: 514 TEILSLDLRQTLEKIT-------LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQ 566
               ++      +          + S      +++ +++ +      +     D++E   
Sbjct: 74  RAGENIRFTVKYDFDLAKAHYPTVLSGISYFEITVSVVLDENKEIDKFLFIAQDVTEAVH 133

Query: 567 EKNKLSHAKKIAEKESSHKSDFL 589
            +  L  +K+            L
Sbjct: 134 TQEILRQSKQKTALAMQAAEVML 156


>gi|197122801|ref|YP_002134752.1| PAS/PAC sensor hybrid histidine kinase [Anaeromyxobacter sp. K]
 gi|196172650|gb|ACG73623.1| PAS/PAC sensor hybrid histidine kinase [Anaeromyxobacter sp. K]
          Length = 761

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 96/609 (15%), Positives = 183/609 (30%), Gaps = 48/609 (7%)

Query: 238 NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297
            +V                            +       T+N  +   +     +     
Sbjct: 49  EQVLGEHIVSLFPGTRDMALAMHARARAGHRVEVPRHAQTVNGRETWWEGSIAPVAMEGG 108

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKC----PIPFFVYSHGNLF-YANPSFL--- 349
                 +             G     E VD+     P    + +   +   AN  +    
Sbjct: 109 TGLLITAREVRSGA-GEQPAGCASCTEIVDRLLACVPEGITIATGPEVVTIANSRYAEER 167

Query: 350 ------LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403
                           +         L   K        P+          +       +
Sbjct: 168 LLGSWNRSVGLSMEQWLARV---EHYLPDGKTPAAVEDLPLWRATRRGE--SVRDAELVV 222

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
           +      +++T       +   + +       +  + R  +  +     +   + EA   
Sbjct: 223 RRPDGTRMSVTCNAEPVRDAAGDVVGGIVAWRDVTEQRRQQAALRTTEERFRLLAEAMPQ 282

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
            + ++  +G +   NRA +   G  V    R  +   L  +            L+L   +
Sbjct: 283 IVCVLAPDGAVELVNRAWTAFSGLDVAATARTGWERVLHPDDVQAARECRH--LALKRLE 340

Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM---HDISEWKQEKNKLSHAKKIAEK 580
             +        +         +  +         +    DI   K+ + +L  A     +
Sbjct: 341 PQDVELRYRAADGTYRWFLSRLAPVVEGGRVVRFIGAGMDIERRKRAEAELRDANAKLVE 400

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
               K +FL  +SHE+R PL  I   S ++++   G     R       I+R    +  +
Sbjct: 401 ADRRKDEFLGMLSHELRNPLAPIRNSSFILRHATPGSDAASRAQ---QVIERQTGHLTHL 457

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILAD 700
           V+DLLD+++I  GK+ L    V L E V  A    +L  +++ +  R S      R L D
Sbjct: 458 VDDLLDVTRISRGKIELRRSAVDLREVVLRAAEDFRLPLDDRGVSFRASVPEAPVRALVD 517

Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760
              + Q+  N+L+NA  FT  G ++++S T     E  +RVRDTG G+         +PF
Sbjct: 518 ATRITQVVGNLLTNAAKFTRRGDEVMVSLTVE-GGEAAIRVRDTGAGIDPAIASSIFQPF 576

Query: 761 GQIPNSQQIRG--------EGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFPL- 810
            Q   +                       + + + + G   + S    +G    +  PL 
Sbjct: 577 VQGERTLARSEGGLGLGLAL--------VRGIAELHGGAASVTSEGKGRGAEFLVRLPLG 628

Query: 811 -YDTSHPHD 818
               S P D
Sbjct: 629 QGQPSAPAD 637



 Score = 74.3 bits (181), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 31/384 (8%), Positives = 88/384 (22%), Gaps = 34/384 (8%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN--------T 142
             G +  ++    ++ G    +++G  +  +                            T
Sbjct: 29  PDGTIVRVNAPWLRSTGFQHEQVLGEHIVSLFPGTRDMALAMHARARAGHRVEVPRHAQT 88

Query: 143 WYGKTTLWPIEGTNLYVPID----LAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
             G+ T W  EG+   V ++    L       R+       G                  
Sbjct: 89  VNGRETWW--EGSIAPVAMEGGTGLLITAREVRSGAGEQPAGCASCTEIVDRLLACVP-- 144

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
             +             ++    +  +    +    L M+  ++ +  Y          E 
Sbjct: 145 --EGITIATGPEVVTIANSRYAEERLLGSWNRSVGLSMEQWLARVEHYLPDGKTPAAVED 202

Query: 259 YPLLTSEESSLPEQED---FHTINLNQYTKKQYFGTLQNNSKES----FEYLSHRNHPSL 311
            PL  +       ++        +  + +       +++ + +       +         
Sbjct: 203 LPLWRATRRGESVRDAELVVRRPDGTRMSVTCNAEPVRDAAGDVVGGIVAWRDVTEQRRQ 262

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
            A     E       +  P    V +  G +   N ++   +            G   +L
Sbjct: 263 QAALRTTEERFRLLAEAMPQIVCVLAPDGAVELVNRAWTAFSGLDVAAT--ARTGWERVL 320

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
               +      + + L R +   +         +                       +  
Sbjct: 321 HPDDVQAARECRHLALKRLEPQDVEL-----RYRAADGTYRWFLSRLAPVVEG-GRVVRF 374

Query: 431 NGIEPEDVDTRINKRKMEIEVMQL 454
            G   +    +  + ++     +L
Sbjct: 375 IGAGMDIERRKRAEAELRDANAKL 398



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/238 (7%), Positives = 44/238 (18%), Gaps = 8/238 (3%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150
             G ++ ++       G             V     +        L  ++         +
Sbjct: 289 PDGAVELVNRAWTAFSGLDVAATARTGWERVLHPDDVQAARECRHLALKRLEPQDVELRY 348

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
                           P+         F G G+           A  +  + K       
Sbjct: 349 RAADGTYR-WFLSRLAPVV-EGGRVVRFIGAGM--DIERRKRAEAELRDANAKLVEADRR 404

Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270
           K     +   +          P       +   T          +  +            
Sbjct: 405 KDEFLGMLSHELR----NPLAPIRNSSFILRHATPGSDAASRAQQVIERQTGHLTHLVDD 460

Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
             +           ++      +   + + ++    +   +S      E      VD 
Sbjct: 461 LLDVTRISRGKIELRRSAVDLREVVLRAAEDFRLPLDDRGVSFRASVPEAPVRALVDA 518



 Score = 47.3 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 11/105 (10%), Positives = 32/105 (30%), Gaps = 2/105 (1%)

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           + +  + G+ ++  +G I+  N    +  G+  E +L +             +  +    
Sbjct: 16  LFDEAAVGLCLVAPDGTIVRVNAPWLRSTGFQHEQVLGEHIVSLFPGTRDMALAMHARAR 75

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDI 561
               +       T+     E      I    +   +   +T  ++
Sbjct: 76  AGHRVEVPRHAQTVN--GRETWWEGSIAPVAMEGGTGLLITAREV 118


>gi|83310208|ref|YP_420472.1| sensor protein fixL [Magnetospirillum magneticum AMB-1]
 gi|82945049|dbj|BAE49913.1| Sensor protein fixL [Magnetospirillum magneticum AMB-1]
          Length = 504

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 81/513 (15%), Positives = 183/513 (35%), Gaps = 29/513 (5%)

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAG 364
              +   + D  E         CP    + +   G     N +F  +  Y   + I    
Sbjct: 2   QETATERHPDLAETKFARVFAVCPDIITITALATGRYLDVNDAFTRVMGYGRDEVIGRTS 61

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
               + + P+           L  +  T          I+      +             
Sbjct: 62  SDIGIWETPQERQ-------RLLEALSTSTRLENFAVRIRRKDGEVVDALLSAERTVLDG 114

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
            + +   G   +  D    ++ +     +    +EA++DG+   + +      + A  ++
Sbjct: 115 EDCLIIVG--RDISDRIQVEKALSDSETRFRLAMEASNDGLWDWDIQTDQAYFSPAYFRM 172

Query: 485 FGYPVEDIL--RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
            GY   ++    + +   L             + +                +      + 
Sbjct: 173 LGYEPGELPAAGRTWRDLLHPEDRQGAEAAACDCIEGRSES-FSAEFRLRARNGGWRWVL 231

Query: 543 II---IKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
                  + P         T  DI+E K+ ++ LS   +  E+ ++    F    SH+++
Sbjct: 232 CRGRAFGRDPDGRASRLIGTHLDITEHKKFEDILSEKNRALERSNADLEQFAYVASHDLQ 291

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TPL  I+ +++ +   R+    +    ++  +I  SG  +  ++NDLL+ S+  + +   
Sbjct: 292 TPLRNIVRYAQ-LLELRYRSRIDADADDFIGFIVDSGKHMARLINDLLEFSR--ASRQAA 348

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
              P+ + EAV++A+  ++L  ++    +      ++P ++AD   +  +  N+L NA+ 
Sbjct: 349 PLAPIPVGEAVAQALKNLELDLSKAGGEVEI---GDMPVVMADQVHLVSLFQNLLGNAVK 405

Query: 718 FT--PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           +     G ++ ++            V D G+G+     EK  + F ++  +     +GTG
Sbjct: 406 YRAPDRGLRLSVTAERAPGGFWRFAVADNGIGIDPEYHEKIFEIFQRLNPASD--ADGTG 463

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           +GL L + +V    G  ++ S P +GT      
Sbjct: 464 VGLALCRRIVHRFGGTIWLQSEPGRGTTFFFTL 496



 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/250 (6%), Positives = 51/250 (20%), Gaps = 15/250 (6%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150
           A G   ++++   + +G    ++IG    D+           + + L             
Sbjct: 34  ATGRYLDVNDAFTRVMGYGRDEVIGRTSSDIGIWETPQERQRLLEALSTSTRLENFAVRI 93

Query: 151 PIEGTNLYVPIDLAA-LPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
             +     V   L+A   +              +                 + +F    E
Sbjct: 94  RRK-DGEVVDALLSAERTVLDGEDCL-----IIVGRDISDRIQVEKALSDSETRFRLAME 147

Query: 210 IKKGHSSVEKEKYDIFSQQSP-------PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
                      + D               P        +     +       +      +
Sbjct: 148 ASNDGLWDWDIQTDQAYFSPAYFRMLGYEPGELPAAGRTWRDLLHPEDRQGAEAAACDCI 207

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTL-QNNSKESFEYLSHRNHPSLSAYFDEGENL 321
                S   +      N              ++    +   +      +    F++  + 
Sbjct: 208 EGRSESFSAEFRLRARNGGWRWVLCRGRAFGRDPDGRASRLIGTHLDITEHKKFEDILSE 267

Query: 322 TPETVDKCPI 331
               +++   
Sbjct: 268 KNRALERSNA 277


>gi|83815407|ref|YP_444969.1| two component system histidine kinase, putative [Salinibacter ruber
            DSM 13855]
 gi|83756801|gb|ABC44914.1| Two component system histidine kinase, putative [Salinibacter ruber
            DSM 13855]
          Length = 1143

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 112/770 (14%), Positives = 227/770 (29%), Gaps = 77/770 (10%)

Query: 92   HGYLKEISEELPKTIGNYAFKMI-GMRLCDV-SDILHIDPNNHIGDLLKRQNTWYGKTTL 149
             G    + E      G  + +++ G     + +D         +  +L+ +  W G+ T 
Sbjct: 396  DGRYVYVDETHADMYGFESAEVLLGASWRRLYADDEVARLEEEVFPILEEEGQWQGEVTG 455

Query: 150  WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
               +GT     + L            S  R    V             +      S   E
Sbjct: 456  SRPDGTTFPAALSLTV---------VSEGRLVCTVRDMTDRRQKERALRHR----SSAME 502

Query: 210  IKKGHSSVEKEKYDIFSQQSPPP---HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
            +     ++  E                      +   +    +++   +  +   + + E
Sbjct: 503  VASDGIAILDEAGTYQYVNQAHASIYGYDTPGALVGRSWTACYEEAEQQRLEAEAMAALE 562

Query: 267  SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL-SHRNHPSLSAYFDEGENLTPET 325
             +   + +   +  +  +  Q               +                +    + 
Sbjct: 563  ETGDWRGEARGVREDGSSFPQELTLTVLEDGSIVCVVRDITARKEDERELRSTKQYYEQI 622

Query: 326  VDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
            ++K      V+   G   + N     +   +  + I     L          +    +  
Sbjct: 623  LEKAVKDLAVFKPDGRYEFVNKQ--SIADPELREWIIGHTNLEYCRKRGMDPELGRRRDQ 680

Query: 385  MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
             +  +                +       T  P    +   E         +  + +  +
Sbjct: 681  AIRTAAEEQRTTQFEERMDTPDGVRHFLRTHKPIT--DVEGEVTHVAAFGIDITERKKRE 738

Query: 445  RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG-------YPVEDILRKPF 497
            + +     ++ ++  AT   +     +      +  + +L G            +     
Sbjct: 739  QALHERQDKIEALYRATRRVLTTEGPD----EVSDRIHELLGSIFDYPLRNTGFVDGDTI 794

Query: 498  TV---------FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
                                    L+          + +   G   + +   LR      
Sbjct: 795  HPARTTIAGPSVPSPEPQPKSGDSLSARALQTGDTVIVEDVGGLDNDIEYGRLRSAAAVP 854

Query: 549  PFSSCYSLTMH------DISEWKQEKNKLSHAKKIAEKESSH------------------ 584
                   +         D    +  +   S+A  +  +                      
Sbjct: 855  IGDRGVVVVGKTEGGGFDPFNLRLLEILSSYAALVLGRLDREGALREAKEEAETARAEAE 914

Query: 585  -----KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639
                 KS  LA +SHEIRTPLT+IIGF++ I  +     G    + +AN I +SG  +L+
Sbjct: 915  AASRAKSAMLANMSHEIRTPLTSIIGFADAIGEETQDAEGAA--LRFANLIGKSGRRLLN 972

Query: 640  IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA 699
             ++ +L++SK+E+G+M L    V +          ++  A  K + +R           A
Sbjct: 973  TLDGVLNLSKLEAGQMQLESTAVDVAAQAETIAEELRPKAKGKGLRLRVDAGEAPVWAEA 1032

Query: 700  DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKP 759
            D   V+ +  N++SNAI +T +G ++ I         V L V DTG+GM    +E    P
Sbjct: 1033 DEGGVQIVLQNLVSNAIKYTDAG-EVRIRVAREGKAAV-LDVEDTGIGMDPGVVETLFDP 1090

Query: 760  FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            F Q         EGTGLGL + K  VD   G   + +   +G+   +  P
Sbjct: 1091 FRQESEGLAREYEGTGLGLTVTKKAVDQMGGSIDVDTEKGEGSHFTVRLP 1140



 Score =  130 bits (327), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 56/532 (10%), Positives = 138/532 (25%), Gaps = 45/532 (8%)

Query: 93  GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL------KRQNTWYGK 146
           G L E++++  + IG    K+ G    D+           +          +    +   
Sbjct: 271 GRLVEVNQKAAELIGASEEKIAGRHQTDLHPDGEAGRYRRLFQACCRSGAEETVRHFEDG 330

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
           ++++        VP++++A  +    R+ +     GI              + ++     
Sbjct: 331 SSIYVQTDDGENVPVEISAATVEVGGRQIA----VGIFRDITEQ---EKRRRTIESSLRA 383

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPP-HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
           + E   G + +E  +Y    +             +   +    + DD +   +  +    
Sbjct: 384 IEEAADGIAVLEDGRYVYVDETHADMYGFESAEVLLGASWRRLYADDEVARLEEEVFPIL 443

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
           E     Q     +  ++     +   L          +      +     +         
Sbjct: 444 EEEGQWQ---GEVTGSRPDGTTFPAALSLTVVSEGRLVCTVRDMTDRRQKERALRHRSSA 500

Query: 326 VDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
           ++       +    G   Y N +   +  Y +   +      +   +A +          
Sbjct: 501 MEVASDGIAILDEAGTYQYVNQAHASIYGYDTPGALVGRSWTACYEEAEQQRLEAEAMAA 560

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
           +    D            ++ +  +       P E      E+     +  +    + ++
Sbjct: 561 LEETGD-----WRGEARGVREDGSSF------PQELTLTVLEDGSIVCVVRDITARKEDE 609

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF---- 500
           R++         ILE     +A+   +G     N+            I            
Sbjct: 610 RELRSTKQYYEQILEKAVKDLAVFKPDGRYEFVNKQSIADPELREWIIGHTNLEYCRKRG 669

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM-H 559
           ++       +  +            E+           L     I  +     +      
Sbjct: 670 MDPELGRRRDQAIRTAAEEQRTTQFEERMDTPDGVRHFLRTHKPITDVEGEVTHVAAFGI 729

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLAR-----VS---HEIRTPLTAI 603
           DI+E K+ +  L   +   E         L       VS   HE+   L +I
Sbjct: 730 DITERKKREQALHERQDKIEALYRATRRVLTTEGPDEVSDRIHEL---LGSI 778



 Score =  112 bits (279), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 46/404 (11%), Positives = 113/404 (27%), Gaps = 31/404 (7%)

Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEK-EKYDIFSQQ--SPPPHLRMKNKVSSLTE 245
             +        +  K+  L E       +   +   +      +       + K++   +
Sbjct: 237 EQDRREQKTDAIRDKYELLLEAAPDPVILADIDTGRLVEVNQKAAELIGASEEKIAGRHQ 296

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLN--------QYTKKQYFGTLQNNSK 297
              H D      +  L  +   S  E+   H  + +                        
Sbjct: 297 TDLHPDGEAGRYR-RLFQACCRSGAEETVRHFEDGSSIYVQTDDGENVPVEISAATVEVG 355

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSV 357
                +      +           +   +++      V   G   Y + +   +  ++S 
Sbjct: 356 GRQIAVGIFRDITEQEKRRRTIESSLRAIEEAADGIAVLEDGRYVYVDETHADMYGFESA 415

Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
           + +  A     L    +++        +L             +   + +          P
Sbjct: 416 EVLLGASW-RRLYADDEVARLEEEVFPIL----EEEGQWQGEVTGSRPDGTTF------P 464

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
              +              +  D R  +R +        S +E  SDGIAI++  G     
Sbjct: 465 AALSLTVVSEGRLVCTVRDMTDRRQKERALRHRS----SAMEVASDGIAILDEAGTYQYV 520

Query: 478 NRAVSKLFGYP-VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
           N+A + ++GY     ++ + +T   E+            + +L+          G  ++ 
Sbjct: 521 NQAHASIYGYDTPGALVGRSWTACYEEAEQQ--RLEAEAMAALEETGDWRGEARGVREDG 578

Query: 537 KLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
                 + +  L   S     + DI+  K+++ +L   K+  E+
Sbjct: 579 SSFPQELTLTVLEDGS-IVCVVRDITARKEDERELRSTKQYYEQ 621



 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 45/384 (11%), Positives = 103/384 (26%), Gaps = 24/384 (6%)

Query: 213 GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ 272
           G  S  ++      + SP P     +               + ++     T+ E S PE 
Sbjct: 13  GPMSHARDPTPSTHRFSPVPWRASPDSFLPTGPSLLRSLTAVSSDGDAGKTTTEGSFPEN 72

Query: 273 EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP 332
                      +  Q+  + +   +++       +   + A    G +     V      
Sbjct: 73  IPP--------SAGQFASSFRRRIRQAMGTDGLSSRQRVRALLQAGVDRFGVEVGFLAQI 124

Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
               S      A  +   L +  +  D+        +  +  LS  NA +          
Sbjct: 125 DLAESTHRTVAAVGAHPKL-QRGAEADLPDTYCRELITQSEALSIENAEEQGWTTDPAYQ 183

Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP-------EDVDTRINKR 445
               S  L T                 +    P                   ++    ++
Sbjct: 184 TYDLSCYLGTKIIVEGRVYGTVCFGSREPRSAPLGPGDEAALELLAQSIGRVLEQDRREQ 243

Query: 446 KMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           K +    +   +LEA  D + + + + G ++  N+  ++L G   E I  +  T      
Sbjct: 244 KTDAIRDKYELLLEAAPDPVILADIDTGRLVEVNQKAAELIGASEEKIAGRHQTDLHPDG 303

Query: 505 TPSVMNHYLTEILSLDLRQTLEK-----ITLGSTKEEKLLSLRIIIKKLPFSSCYSLT-- 557
                             +T+            T + + + + I    +           
Sbjct: 304 EAGRYRRLFQACCRSGAEETVRHFEDGSSIYVQTDDGENVPVEISAATVEVGGRQIAVGI 363

Query: 558 MHDISEWKQEKNKLSHAKKIAEKE 581
             DI+E ++ +  +  + +  E+ 
Sbjct: 364 FRDITEQEKRRRTIESSLRAIEEA 387



 Score = 54.6 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/251 (7%), Positives = 60/251 (23%), Gaps = 20/251 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAF-KMIGMRLCDVSDILHIDPNNHIGDLLKRQ-NTWYGK 146
           +D  G  + +++      G      ++G       +                +   W G+
Sbjct: 511 LDEAGTYQYVNQAHASIYGYDTPGALVGRSWTACYEEAEQQRLEAEAMAALEETGDWRGE 570

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                 +G++    + L  L     +          +V       +     +   + +  
Sbjct: 571 ARGVREDGSSFPQELTLTVL----EDGSI-----VCVVRDITARKEDERELRSTKQYYEQ 621

Query: 207 LHEIKKGHSSVEKEKYDI--------FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
           + E      +V K                +     +   N           +    + + 
Sbjct: 622 ILEKAVKDLAVFKPDGRYEFVNKQSIADPELREWIIGHTNLEYCRKRGMDPELGRRRDQA 681

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
                 E+ +   +E   T +       +    + +   E     +     +     ++ 
Sbjct: 682 IRTAAEEQRTTQFEERMDTPDG-VRHFLRTHKPITDVEGEVTHVAAFGIDITERKKREQA 740

Query: 319 ENLTPETVDKC 329
            +   + ++  
Sbjct: 741 LHERQDKIEAL 751


>gi|319778144|ref|YP_004134574.1| pas sensor protein [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317171863|gb|ADV15400.1| PAS sensor protein [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 811

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 83/377 (22%), Positives = 157/377 (41%), Gaps = 22/377 (5%)

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG-YPVEDILRKP 496
           +D +  +R++ +  M   +++    D + I + +G  ++ N A +++ G   V+D++ K 
Sbjct: 182 LDRQQRRRELLMSNMTYRAMVRELPDCLNIKDVDGRFIAANPATAEMVGATSVDDLIGKT 241

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-YS 555
              F  +             L       +++  L    + +   L  +       S    
Sbjct: 242 DFDFYPKEVAERFRQDEMGALEAGQTLRIDQPALL--PDGRQGWLYTLKAPFRDESGKIV 299

Query: 556 LTM---HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
             +    DI+E K+               +  K+DF++ VSHE+RTPLT+I G   +I  
Sbjct: 300 GVITYNRDITEQKRT--------------AQLKNDFISTVSHELRTPLTSIRGSLGLIAA 345

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
              G L  P+     N    +   ++ ++ND+LD+ KIESG +    + + + + + +AI
Sbjct: 346 GVAGELP-PKAANLVNIAHTNSERLVLLINDILDMEKIESGVITFKIKQMPVRQVLEQAI 404

Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
           +    Y  + RI I             D   + Q+  N+LSNAI F+ + G + +     
Sbjct: 405 AASSNYMADSRIRIVLVDDAPRAEANIDPDRLHQVMANLLSNAIKFSQTDGTVTVKFQRR 464

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
             + + + V D G G+      +    F Q   S   +  GTGLGL + K++ +   G  
Sbjct: 465 DRDMLRISVVDQGAGIPEAFRSRIFGKFEQADASSTRKIGGTGLGLSIVKSITEKLGGAV 524

Query: 793 YIFSTPAKGTLIEIIFP 809
              +   +GT   +  P
Sbjct: 525 SFETEEGQGTSFHVDLP 541



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 59/626 (9%), Positives = 132/626 (21%), Gaps = 102/626 (16%)

Query: 90  DAHGYLKEISEELPKTIG-NYAFKMIGMR-----LCDVSDILHIDPNNHIGDLLKRQNTW 143
           D  G     +    + +G      +IG         +V++    D        L+   T 
Sbjct: 213 DVDGRFIAANPATAEMVGATSVDDLIGKTDFDFYPKEVAERFRQDEMG----ALEAGQTL 268

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRAL------- 196
                    +G   ++       P    + +  G   +              L       
Sbjct: 269 RIDQPALLPDGRQGWLYTL--KAPFRDESGKIVGVITYN--RDITEQKRTAQLKNDFIST 324

Query: 197 --------GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT---- 244
                      +      +     G    +       +  +    + + N +  +     
Sbjct: 325 VSHELRTPLTSIRGSLGLIAAGVAGELPPKAANLVNIAHTNSERLVLLINDILDMEKIES 384

Query: 245 ----------EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHT-INLNQYTKKQYFGTLQ 293
                           +  +      +  S    +   +      N++     Q    L 
Sbjct: 385 GVITFKIKQMPVRQVLEQAIAASSNYMADSRIRIVLVDDAPRAEANIDPDRLHQVMANLL 444

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTK 353
           +N+ +  +              D       +     P  F     G    A+ S      
Sbjct: 445 SNAIKFSQTDGTVTVKFQRRDRDMLRISVVDQGAGIPEAFRSRIFGKFEQADASSTRKIG 504

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS---ARLHTIQWNRENS 410
              +    +      L  A                       A          +      
Sbjct: 505 GTGLGLSIVKSITEKLGGAVSFETEEGQGTSFHVDLPEAHRQADKPVLVERRARKRDGRL 564

Query: 411 LAMTFIPFEKANQFPENMP-QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469
             +              +    G   +        + +      +   L+          
Sbjct: 565 RVLICEDEPDIAAVIAALLDAEGFSSDVAPDIDTAKALLSSRDYVALTLD---------- 614

Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
               I     +  KLF     D+   P    +     S +       L+      ++ + 
Sbjct: 615 ----IKLAGESGIKLF----HDLRASPVNSDIAVIVISAVADEARRSLNGSAVGIIDWLE 666

Query: 530 LGSTKE----------EKLLSLRIIIKKLPFSSCYSLTMHD-------ISEWK---QEKN 569
                +           + +  R  +  +         M +       I+  K   + + 
Sbjct: 667 KPVDSKRLHAALAKIVGRRVEPRPQVLHVEDDEGVLAVMSEGLGSGVSITSAKTLQEARQ 726

Query: 570 KLSHAKKIAEKESSHK-----SDFLARVSHEIRTPL-TAIIGFSEVIKNQRFGPLGNPRY 623
            ++  +                D L  +      PL T +I FS    +Q+ G     R 
Sbjct: 727 AVAKHRFDLIILDIALPDGSGLDLLVDL------PLETGVIVFSAAELDQKLG----DRV 776

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISK 649
                    S   V  +V  +L  S+
Sbjct: 777 QAIMTKTKASEIDVAKLVRSMLVTSR 802


>gi|78223629|ref|YP_385376.1| Hpt sensor hybrid histidine kinase [Geobacter metallireducens
           GS-15]
 gi|78194884|gb|ABB32651.1| Hpt sensor hybrid histidine kinase [Geobacter metallireducens
           GS-15]
          Length = 827

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 83/306 (27%), Positives = 151/306 (49%), Gaps = 11/306 (3%)

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK-NKLS 572
              ++ D R   E+I LG  +E   L+    +            ++++ E  +EK  +L 
Sbjct: 260 ARRIAHDRRYLGEQIPLGRDREMNELAASFNVMSTE----LHAFINNLEEKVEEKTAELV 315

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
            A++ AE+ +  K +FLA +SHEIRTP+ AIIG +++++        + +     +    
Sbjct: 316 QAREEAEEANRVKGEFLATMSHEIRTPMNAIIGINQLLQETHL----SQQQRRLVDDSSN 371

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
           +   +L I+ND+LD S++E+ ++ L  E + L   V     L  + A  + I +     +
Sbjct: 372 AAESLLTIINDILDFSRVEARRLELSDEALELRSFVESLRRLFAVKAERENISLSILVGD 431

Query: 693 NIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS-NEEVILRVRDTGVGMTN 750
             P+ I  D   ++Q+  N+LSNAI FTP+GG++ ++         ++  V DTG+G+  
Sbjct: 432 EAPQFICGDPARLRQVLTNLLSNAIKFTPTGGRVTLAADADPAGGNLLFTVSDTGIGIEK 491

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            + E+  + F Q  +S      GTGLGL + + +V+   G   + S   KG +  ++ PL
Sbjct: 492 DKHERIFEMFRQADSSTTRNYGGTGLGLAITRGLVELMGGTIEVESEAGKGAVFRVLLPL 551

Query: 811 YDTSHP 816
              + P
Sbjct: 552 RPATGP 557


>gi|172039664|ref|YP_001806165.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
           51142]
 gi|171701118|gb|ACB54099.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
           51142]
          Length = 765

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 80/262 (30%), Positives = 128/262 (48%), Gaps = 11/262 (4%)

Query: 563 EWKQEK--NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK--NQRFGPL 618
           E +  +   +L      ++  +  KS+FL  +SHE+RTPLT IIG S  +   +Q    L
Sbjct: 366 EQRVIERTQELRDTLVASQAANHSKSEFLGNMSHELRTPLTCIIGLSGTLLHWSQESTTL 425

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
              +  +Y   I  SG  +LD++N++L+ S ++SGK  L     SL +     I  V   
Sbjct: 426 PLDKQQKYLQTIQNSGKHLLDMINEILEYSNLQSGKYVLAVREFSLTKVAKNVIQRVSDE 485

Query: 679 ANEKRILIRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
           A  +RI +      N  +    AD   V+QI  ++L+NA+ FTP  G + +      N  
Sbjct: 486 AEHRRINLELDLQINQQQDSFYADPERVQQILYHLLNNALKFTPENGSVTLRI-WRENNH 544

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           V L V DTG+G+   ++    + F Q+ NS++    GTGLGL L K +V+ + G   + S
Sbjct: 545 VSLEVEDTGIGIQEEKIPLLFESFQQLENSRRRMYGGTGLGLALTKQLVELHGGTIEVES 604

Query: 797 TPAKGTLIEIIFPLYDTSHPHD 818
              +G+   I  P    + P +
Sbjct: 605 IINQGSTFIIRLP----NQPQN 622


>gi|229153745|ref|ZP_04281886.1| hypothetical protein bcere0011_52440 [Bacillus cereus m1550]
 gi|228629698|gb|EEK86385.1| hypothetical protein bcere0011_52440 [Bacillus cereus m1550]
          Length = 590

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 88/501 (17%), Positives = 177/501 (35%), Gaps = 41/501 (8%)

Query: 314 YFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
              + E      +   P+    +  +G+    N    ++T Y + + I     L  L   
Sbjct: 102 LLSQKEEELHTILQNMPVMVDALDYNGDFVLWNRECEIVTGYTAEEIIGNPNALQLLYPD 161

Query: 373 PKLSDNNAIKPVM----LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
                    K +         +      +  + TI W+                      
Sbjct: 162 HNYRHQIQKKFLTCGKNFRDWEMHLTCKNGEIKTIMWSN-----------ISEQFPVTGY 210

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
               +  +    +  + +++ +  +L  I +A  D   +   +G I+         F  P
Sbjct: 211 SYWAVGVDITHLKAIEEQLKQQTSELELIFKALPDLCFLTEDDGTIIDYKAGSPTKFYVP 270

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            E  + K F   L  +        + ++        +E           +         L
Sbjct: 271 AEAFMGKKFYEVLPSSVAQQFQEAINQVKEKGTNVIVEYPLTL---NGSIDFFEARCLPL 327

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                  + + DI+E K+ +  L+ +  +A           A V+HE+R PLT I GF +
Sbjct: 328 LHDK-IMIIVRDITERKKTEELLNKSDTLA-----AIGQLAAGVAHEVRNPLTVIKGFIQ 381

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
                    +      +Y + +      +  I+ + L I+K +     ++ E  ++ +  
Sbjct: 382 ------LFQINKEDQEKYFDLMLSEIERIEAILQEFLAIAKTD----EINTEKKNIYQIF 431

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
              +SL+   A    I +     +    I      +KQ+ +NIL N+I   P+GG I I 
Sbjct: 432 KNVVSLMNTKAIMTNIQVELFTDDKDIIIECSENQLKQVFINILQNSIEAMPNGGGISIH 491

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
               +++ VI+ V D G+G+    +++  +PF         + +GTG+GL L+  +++++
Sbjct: 492 IKEINDDGVIIHVIDEGIGIPEERIKRLGEPFY------STKEKGTGIGLMLSYKIIESH 545

Query: 789 MGKFYIFSTPAKGTLIEIIFP 809
            G   I S    GT + I  P
Sbjct: 546 QGTISIMSEVGVGTTVTIYLP 566


>gi|239627311|ref|ZP_04670342.1| two-component system protein sensor histidine kinase [Clostridiales
           bacterium 1_7_47_FAA]
 gi|239517457|gb|EEQ57323.1| two-component system protein sensor histidine kinase [Clostridiales
           bacterium 1_7_47FAA]
          Length = 810

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 111/512 (21%), Positives = 196/512 (38%), Gaps = 50/512 (9%)

Query: 334 FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393
            +  H  L +AN  +  L  +   +  E+      L           +   ++   +   
Sbjct: 39  LLDEHFTLVWANEFYYDLIGWPRGEYEEMFHNQPDLYYQDDQELWADLTQTVIKALESRQ 98

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
                 +  ++      + + F                 +     D    +R+       
Sbjct: 99  GGYQM-VSRLRRKNGEYIWVQFSTRFSDEYIDGYQVAYSVLTNIDDLVQMQRE------- 150

Query: 454 LCSIL-EATSDGI--AIINRE--GIILSTNRAVSKLFG----YPVEDILRKPFTVFLEQN 504
             S+  E     +    I+++   ++L  N    + FG      +  +  +        +
Sbjct: 151 -RSVTYENLPGFVAKYRIDQDLGMVLLDANARFMEYFGDNTNGELHALQGQNIR-----D 204

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL---PFSSCYSLTMHDI 561
               +  +  E+L     + +  +     ++ + L L++    +     S  Y     DI
Sbjct: 205 NMETIQSHRNELLKG---EPVRFVMHVKDRKGQNLWLQVNAACIDWQEKSPVYLAIFIDI 261

Query: 562 S---EWKQEKNKLSHAKKI-------AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
           +   E ++ + KL+            AE  +  KSDFL+R+SHEIRTP+ AIIG + +  
Sbjct: 262 TDVTELREMQKKLTEQTAALKDALTVAEHANRAKSDFLSRMSHEIRTPMNAIIGMTTIAA 321

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
                     R  +    I  S   ++ ++ND+LD+SKI  GKM +  EP  L+  V   
Sbjct: 322 AYID---DKQRVADCLEKIGYSSKHLMTLINDVLDMSKISEGKMRIAHEPFKLETVVESI 378

Query: 672 ISLVQLYANEKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
            S++   A EK +             ++ D   + Q+ LN+LSNA+ FTP GG I +   
Sbjct: 379 SSIIYPQAREKGLDFTVPLVELTETELIGDSLRLNQVLLNLLSNALKFTPKGGSIRMEIR 438

Query: 731 --HTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
                + ++ LR  V DTG+GM++  +E+   PF Q   S      GTGLG+P+ K +V 
Sbjct: 439 QMLKKDGKIRLRFTVSDTGIGMSSAFMERLFVPFEQEDMSAGQNAGGTGLGMPITKNLVT 498

Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
              G   + S   KGT   +     D   P D
Sbjct: 499 LMGGTITLQSELGKGTSFIVEL---DFDLPKD 527


>gi|222100696|ref|YP_002535264.1| Histidine kinase precursor [Thermotoga neapolitana DSM 4359]
 gi|221573086|gb|ACM23898.1| Histidine kinase precursor [Thermotoga neapolitana DSM 4359]
          Length = 473

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 80/403 (19%), Positives = 165/403 (40%), Gaps = 34/403 (8%)

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469
           SL +         +       + +    ++     R++E     + +IL    +GI +  
Sbjct: 93  SLIVFMDHQPSMEETEIFRIFSFLSSIVLENVRLYRELEETYDYVNTILNNLPEGIFVY- 151

Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
             G I   N   ++                   +           E +SL +++T E   
Sbjct: 152 SNGEIRFQNERFAR---------------ENFPEEVMKKAMEISEEAISLGVQRTGEIE- 195

Query: 530 LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
                E+K  S+  I       +     + +I+  K+ +          ++    K++F+
Sbjct: 196 ----SEDKFFSITSIPLLYNGETQALTIVENITASKELER--------LKRIDRMKTEFV 243

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
           A +SHE+RTPLTAI  ++E + N     L      E+   +    N + +++N+LLD S+
Sbjct: 244 ANISHELRTPLTAIKAYTETMYNS-LEELDTDTLKEFLEVVLDQSNHLENLLNELLDFSR 302

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709
           +E   + +  E  ++ E +  A+  ++ +A  + + +             D   +KQ+ L
Sbjct: 303 LERKALQIKKEKTNICELLESAVGAIKEFAASQGVKVFLEKKVPCFEAEVDPTRMKQVLL 362

Query: 710 NILSNAIHFTPSGGQ---IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
           N+LSN + ++        + +      N  +++ V D G+G+  +  EK  + F ++ +S
Sbjct: 363 NLLSNGVKYSKKDEPEKYVKVVLDKDENG-ILIVVEDNGIGIPEHAREKIFEQFYRVDSS 421

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
                 GTGLGL + K +V+ + G+ ++ S   KG+   +  P
Sbjct: 422 LTYEVSGTGLGLAITKEIVELHGGRIWVESEEGKGSRFFVWIP 464


>gi|254410303|ref|ZP_05024083.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196183339|gb|EDX78323.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 747

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 88/549 (16%), Positives = 198/549 (36%), Gaps = 43/549 (7%)

Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDI 360
           ++  + H  + A  +  E+     ++  P   F + S G       +        + D I
Sbjct: 205 HIQQQKHQQVIAALNRAESRNNALLEIIPDALFRINSAGIYLDCYGTKTETLSIPATDII 264

Query: 361 E---------IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411
                        GL        L      +       +       AR+    +   + +
Sbjct: 265 GKHLHQILPTQVAGLIWEHIEQALETKTIQRVEYQLWVNGKARNFEARIVASGFEEVSVI 324

Query: 412 AMTFIPFE-----------------KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
                                    +          + ++ E ++ +  + ++     QL
Sbjct: 325 VQDVTDRVQMRLSLEQVNDALEMRVEERTAALRKVNDVLQAEIIERKRIEEQLRTSEEQL 384

Query: 455 CSILEATSDGIAIINREG-IILSTNRAVSKLFGYPVEDILRKPFTVF--LEQNTPSVMNH 511
             + E   +   +   +   ++  +    +++G   + +  +P +    +       +  
Sbjct: 385 RQLTENIREVFFLTTPDFSQMIYISPVYQEVWGRSTKSLYEQPSSWLESIHPEDRDRVTQ 444

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQE 567
            L +    +     ++       +  +  + +    +   +      +    DI+E ++ 
Sbjct: 445 ALHKQSLGEA--NFQEEYRIVRPDSSVRWMGVRAFPVVNEAGITIRIAGIAEDITERQRV 502

Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
           + ++ +A    ++ S  KS F+   SHE RTPLT I   +E +         + +   + 
Sbjct: 503 QAEILNALAQEKELSDLKSRFITVTSHEFRTPLTTIHSSAE-LLEHYRHKWSDEKQQMHL 561

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ---LYANEKRI 684
           + I  S   +  ++ND+L + K ++GK+ L  EP++L+   +  +  +Q      +   I
Sbjct: 562 HRIQGSVKYMTKLLNDVLILGKTDAGKLALSLEPINLELFCATLVKELQLNQPELSVINI 621

Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744
                   +   I  D + ++QI  N+LSNAI ++ S   I +       E++ L +RD 
Sbjct: 622 SYEWELTLDAQVIYLDKQLLQQILENVLSNAIKYSSSEETIEVKLKGN-REQITLEIRDR 680

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G+   + ++  + F +  N       GTGLGL + K  VD + G   I S    GT +
Sbjct: 681 GIGIPLDDQDRLFEAFHRGTNVGT--IPGTGLGLTIVKKCVDIHQGNIDINSIIGVGTTV 738

Query: 805 EIIFPLYDT 813
            +  P+ ++
Sbjct: 739 TVTLPILNS 747


>gi|144898063|emb|CAM74927.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase, HAMP region:Histidine
           kinase A, N-terminal:Hpt [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 1117

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 106/561 (18%), Positives = 199/561 (35%), Gaps = 52/561 (9%)

Query: 287 QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC-PIPFFVYSHGNLFYAN 345
           Q    L  +                    ++  ++     D          +  NL    
Sbjct: 57  QRSEALSESGLSLSTATGMFELRRKRDVVNDQLSVLGRAFDDLGQKGVSEAARNNLAQHR 116

Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405
            +       + V  +     L   L       +   + +      +  +          W
Sbjct: 117 DAMAANLN-QLVAAVGERIELEEKLAQATRRVDVLSQTIRQAEQQQGGVP---------W 166

Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK--RKMEIEVMQLCSILEATSD 463
             E  + +         +   +  +             +    +     QL +I+   SD
Sbjct: 167 ALERGITLMTRALSITREHEMDALEQEAAQVLAAAIKARMPASVRDAASQL-AIMTQESD 225

Query: 464 GIAIINR-----EGII---LSTNR--------AVSKLF-GYPVEDILRKPFTVFLEQNTP 506
           GI  + R     +G +   L  N         + + LF     E    +           
Sbjct: 226 GIFTLRRRWLVVDGRVKGLLRHNDNLMSRLSLSATNLFAELERETAADREAFSHFITRDQ 285

Query: 507 SVMNHYLTEILSLDL-------RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH 559
           +V+       + + L       RQ + ++               +          +    
Sbjct: 286 AVLYGVTGAAILVGLLVMLYVNRQVVGRLVRLQETMGSHARGVAMPIPTEGKDEIADMAR 345

Query: 560 ----DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
                +   +Q ++ LS A+  A++ +  KS FLA +SHEIRTP+ AIIG S +      
Sbjct: 346 SLGYFVDAIRQREDALSQARDEADQANQAKSAFLANMSHEIRTPMNAIIGLSGLALRTGL 405

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
               +PR  +Y   I  +   +L I+ND+LD SKIE+G++       S+ + + +  +L+
Sbjct: 406 ----DPRQRDYLIKIQNASQTLLGIINDILDFSKIEAGRLEFEQIEFSITDVLDDVANLI 461

Query: 676 QLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI-IISTTHTS 733
              A EK + I  +   ++P+ ++ D   + Q+  N+ +NAI FT  G  +  +     S
Sbjct: 462 TRRAEEKGLEIVFATTGDLPQKVIGDPLRLAQVITNLCTNAIKFTHVGEVVVRVELQSIS 521

Query: 734 NEEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
           + +      VRDTG+G+T  +  +  +PF Q   S   +  GTGLGL + + MV+   G+
Sbjct: 522 DGKACLLFSVRDTGIGLTEQQAARLFEPFSQADASTTRQFGGTGLGLSICRRMVELMEGR 581

Query: 792 FYIFSTPAKGTLIEII--FPL 810
            ++ S   KG+        P+
Sbjct: 582 IWVDSEHGKGSTFSFTASLPM 602


>gi|332306753|ref|YP_004434604.1| PAS/PAC sensor hybrid histidine kinase [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332174082|gb|AEE23336.1| PAS/PAC sensor hybrid histidine kinase [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 661

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 94/522 (18%), Positives = 193/522 (36%), Gaps = 38/522 (7%)

Query: 325 TVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDD-----IEIAGGLSTLLDAP----- 373
             +  P       + G +  AN +F     Y   +      I+    +            
Sbjct: 10  LFEHAPCGLVTTQTDGTILRANATFCGWLGYSLDEIVDKRKIQELFTIGGRFFHHTHWAP 69

Query: 374 --KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN--QFPENMP 429
             +L  + +   + +   + + +         Q        + F    +    +      
Sbjct: 70  LLQLQGSVSEVQIDIKAKNGSVLPMLINGSRHQQGETRFDQLAFFLATERKNYERELITA 129

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA----IINREGIILSTNRAVSKLF 485
           +  +E      R  + K++     L   L +   G+     I ++    +  +  + +L 
Sbjct: 130 RKSVEESLASLRTTQEKLQESRDMLGIALRSARMGVWSQNLIADQ----IWWSPELQQLT 185

Query: 486 GYPVEDILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR- 542
           G+   +     + F   +  +  S     + + +                K +  L++  
Sbjct: 186 GHSDNEYWESSQAFYQIIHPDDRSQFIAEIEKAIESK--SDYNVQFRIQHKNDSWLTMET 243

Query: 543 ---IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                      +      + DIS+ K  + +LS   +        K +FLA + HE+R P
Sbjct: 244 RGHATYSDEDQALSIVGIIMDISDRKAAEEQLSALNQQLSIADRRKDEFLATLGHELRNP 303

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  I    E+++ +           +    I+R  + +  +V+DLL+ S+I  G+++L  
Sbjct: 304 LAPICNVLEIMRAKETDDTFMHWSRDM---IERHVSQLTHLVDDLLEASRISQGRLSLRT 360

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719
           EP+++D+AV  A+  VQ         +  +   +   I AD   + QI +N+L+NA  +T
Sbjct: 361 EPINIDDAVQNAVESVQDLMKSSEHNLTVNKPQHPIIIDADATRITQIIVNLLTNAGKYT 420

Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
           P GG I+++     N E I+ V+DTG+G+   +L      F Q+  +      G G+GL 
Sbjct: 421 PKGGDILLNVFKQEN-EAIVSVKDTGIGIPAEQLTNVFNMFSQLTPALDRAQGGLGIGLS 479

Query: 780 LAKAMVDANMGKFYIFS-TPAKGTLIEIIFPLYDTSHPHDCI 820
           L   +V  + G     S    +G+   +  P+  +  P + +
Sbjct: 480 LVHGLVKLHGGNIVALSDGENQGSEFIVSLPIITS--PQEAL 519



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 42/134 (31%), Gaps = 2/134 (1%)

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
           L  + E    G+     +G IL  N       GY +++I+ K     L        +H  
Sbjct: 7   LAYLFEHAPCGLVTTQTDGTILRANATFCGWLGYSLDEIVDKRKIQELFTIGGRFFHHTH 66

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS--LTMHDISEWKQEKNKL 571
              L        E       K   +L + I   +          L     +E K  + +L
Sbjct: 67  WAPLLQLQGSVSEVQIDIKAKNGSVLPMLINGSRHQQGETRFDQLAFFLATERKNYEREL 126

Query: 572 SHAKKIAEKESSHK 585
             A+K  E+  +  
Sbjct: 127 ITARKSVEESLASL 140


>gi|258593327|emb|CBE69666.1| putative Histidine kinase [NC10 bacterium 'Dutch sediment']
          Length = 571

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 85/291 (29%), Positives = 147/291 (50%), Gaps = 29/291 (9%)

Query: 548 LPFSSCYSLTMHDISE-----WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
           L   +  +  + D++       ++  ++L    +   + S HKS+FLA +SHE+RTPL A
Sbjct: 274 LDERARVARELRDLNRSLEDRIRERTSQLEETNRDLSRASRHKSEFLANMSHELRTPLNA 333

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           I+GF+++I +  +G + N    E    I  +G  +L ++ND+LD+SKIE+G+M L+    
Sbjct: 334 ILGFTDLIIDGIYGQVPNE-LRESMEDIRINGRHLLRLINDVLDLSKIEAGQMRLNLGEY 392

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
           SL   +   IS  +  A EKR+ +      ++P  L D + + Q+ +N++ NAI FTP G
Sbjct: 393 SLQSLIDSVISATRSLATEKRLELVARVEADLPPALGDSKRMTQVLMNLVGNAIKFTPGG 452

Query: 723 GQIIISTTH-----------------------TSNEEVILRVRDTGVGMTNYELEKAMKP 759
           G + ++                          TS + + + V DTG+G+   EL+     
Sbjct: 453 GSVNVTAKSVSSSEFQVSSSQPETRNPKPETPTSPDFIEISVADTGIGIPAEELKSIFGE 512

Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           F Q+ +S      G+GLGL +AK +V+ + G  +  S   +G+   +  PL
Sbjct: 513 FRQVDSSITREYGGSGLGLSIAKRLVEMHRGSIWADSQVGRGSTFYVRIPL 563


>gi|111226686|ref|XP_642053.2| histidine kinase [Dictyostelium discoideum AX4]
 gi|122126078|sp|Q54YZ9|DHKJ_DICDI RecName: Full=Hybrid signal transduction histidine kinase J
 gi|90970717|gb|EAL68114.2| histidine kinase [Dictyostelium discoideum AX4]
          Length = 2062

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 84/270 (31%), Positives = 134/270 (49%), Gaps = 13/270 (4%)

Query: 555  SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
             +    I   K+   K + AK+ AE  S  KSDF+A +SHEIRTP+  IIG +++  +  
Sbjct: 1317 LIINEMIHNLKETTLKNTLAKETAEAASRAKSDFMANMSHEIRTPMNGIIGMTDLTLDTE 1376

Query: 615  FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                      EY + +  S   +L I+ND+LD SKIE+G++ L     SL   + +A+  
Sbjct: 1377 LTA----EQREYLSMVQSSAGSLLTIINDILDFSKIEAGRLELDQAEFSLRAHLYDALKT 1432

Query: 675  VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
            +   A++K I +    A+++P  ++ D   ++QI  N++ NAI FT  G ++ +      
Sbjct: 1433 LSWRAHQKCIELVCDIASDVPDSLIGDPGRLRQIVNNLVGNAIKFTSQG-EVDLVVKVEK 1491

Query: 734  N---EEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
            +    EV+    V DTG+G+   +L    + F Q   S   R  GTGLGL ++  +V+  
Sbjct: 1492 SLSCGEVVLKFSVIDTGIGIPKDKLHLIFEAFSQADGSITRRYGGTGLGLTISTRLVELM 1551

Query: 789  MGKFYIFSTPAKGTLIEII--FPLYDTSHP 816
             GK  + S   KG+  E    FP      P
Sbjct: 1552 KGKLSVVSKSGKGSTFEFTAQFPTSPNQLP 1581


>gi|322420198|ref|YP_004199421.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           M18]
 gi|320126585|gb|ADW14145.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           M18]
          Length = 529

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 88/536 (16%), Positives = 193/536 (36%), Gaps = 32/536 (5%)

Query: 286 KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYA 344
                 LQ  +      L  +          E E       +  P+    +  +G L   
Sbjct: 12  PTQLARLQAENAALRRGLEEQRGALERLA--ESEKRFRCLYNDTPVMLHSIDRNGFLVGV 69

Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
           +  +  +  Y   + I        L +  +   +  + P        T    +     ++
Sbjct: 70  SNYWTEVLGYTRDEVIGRR-STEFLTEDSRRYAHQVVLPEFFR----TGFCRNIEYQLVR 124

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
            N E  + +      + ++    +    +  +  + +  +R +     +   I+E + +G
Sbjct: 125 KNGE-VIDVLLSASAERDEAGNIVSSLAVMTDVTEWKAAERALRESEARYRMIVETSQEG 183

Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
           I   +  G +   NR  +++ GY + +++ +PF     +           +     + + 
Sbjct: 184 IVAADPTGRLTYLNRQFAEMLGYEISEVMGRPFLD-FVEEGLHGEAAARQKSREDGVSE- 241

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNK-------LSH 573
               T+   K+   +   +    +  +          + D++  KQ   +       LS 
Sbjct: 242 -HYETILVRKDGSRVWASVSAIPVRDARGGFVGSFAMISDVTRKKQAAEEIEVLHTHLSA 300

Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
                E  +     F   VSH++R PLTAI G+S+V+  + +G   +P+  EY   I   
Sbjct: 301 RALELETANEELEAFNYTVSHDLRRPLTAINGYSQVVL-ELYGRSMDPQCKEYVQEILNG 359

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693
              + ++++ LL+ S+  SG   L  E V +   V E ++ ++L   ++R++        
Sbjct: 360 SIKMNNLIDTLLNFSRRYSG--VLQRETVDVSGLVQEILAELRLSDPQRRVVSVVQPD-- 415

Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT-HTSNEEVILRVRDTGVGMTNYE 752
             +  AD + ++ +  N+L NA  ++    +  +         + +  VRD G G     
Sbjct: 416 -VQADADPQLLRVVLDNLLGNAWKYSAKKEESRLEFGVVEHQGKEVFFVRDNGAGFDMSR 474

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
                KPF ++        +GTG+GL   + ++  + G  +  + P KG       
Sbjct: 475 ASSLFKPFQRLH--DVEDFKGTGIGLASVQRIIQRHGGLIWAEAEPGKGATFFFTL 528



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 25/249 (10%), Positives = 70/249 (28%), Gaps = 13/249 (5%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D  G L  ++ +  + +G    +++G    D  +              +   + + +T L
Sbjct: 188 DPTGRLTYLNRQFAEMLGYEISEVMGRPFLDFVEEGLHGEAAARQKSREDGVSEHYETIL 247

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA--------LGKRLD 201
              +G+   V   ++A+P+      F G   F ++                   L  R  
Sbjct: 248 VRKDGS--RVWASVSAIPVRDARGGFVG--SFAMISDVTRKKQAAEEIEVLHTHLSARAL 303

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
           +  +   E++  + +V  +     +  +    + ++    S+          +      +
Sbjct: 304 ELETANEELEAFNYTVSHDLRRPLTAINGYSQVVLELYGRSMDPQCKEYVQEILNGSIKM 363

Query: 262 LTSEESSLPEQEDFHTINLNQYT-KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
               ++ L     +  +   +          +    + S       +        D    
Sbjct: 364 NNLIDTLLNFSRRYSGVLQRETVDVSGLVQEILAELRLSDPQRRVVSVVQPDVQADADPQ 423

Query: 321 LTPETVDKC 329
           L    +D  
Sbjct: 424 LLRVVLDNL 432



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 20/264 (7%), Positives = 65/264 (24%), Gaps = 10/264 (3%)

Query: 68  LDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI 127
            +SE  F        V    +ID +G+L  +S    + +G    ++IG R  +       
Sbjct: 40  AESEKRFRCLYNDTPV-MLHSIDRNGFLVGVSNYWTEVLGYTRDEVIGRRSTEFLTEDSR 98

Query: 128 DPNNHIG--DLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVH 185
              + +   +  +       +  L    G    + + L+A                 ++ 
Sbjct: 99  RYAHQVVLPEFFRTGFCRNIEYQLVRKNGE--VIDVLLSASAERDEAGNIV--SSLAVMT 154

Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP---HLRMKNKVSS 242
                       +  + ++  + E  +           +              +   +  
Sbjct: 155 DVTEWKAAERALRESEARYRMIVETSQEGIVAADPTGRLTYLNRQFAEMLGYEISEVMGR 214

Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302
               +  +    +         +  S   +      + ++         +++        
Sbjct: 215 PFLDFVEEGLHGEAAARQKSREDGVSEHYETILVRKDGSRVWASVSAIPVRDARGGFVGS 274

Query: 303 LSHRNHPSLSAYFDEGENLTPETV 326
            +  +  +      E   +    +
Sbjct: 275 FAMISDVTRKKQAAEEIEVLHTHL 298


>gi|86356277|ref|YP_468169.1| two-component sensor histidine kinase protein [Rhizobium etli CFN
           42]
 gi|86280379|gb|ABC89442.1| probable two-component sensor histidine kinase protein [Rhizobium
           etli CFN 42]
          Length = 538

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 73/386 (18%), Positives = 157/386 (40%), Gaps = 26/386 (6%)

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
            N + +E E ++  +++ +T D + +I+  G I S N A   +FGY  ++ + +   + +
Sbjct: 149 RNNQNLEAERIRFGALVRSTPDAVIVIDGRGTIKSFNPAAESMFGYAPQETIGRNIKMLM 208

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKL--PFSSCYSLT 557
            +   S  + YL         + +   ++  G  K   +  + + I  +    +  +   
Sbjct: 209 PEPYHSEHDGYLAHYRQTGEERIIGTTRMVSGRRKSGIVFPIEVSISVVVSGETKTFVGI 268

Query: 558 MHDISEWKQEKN-------KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
           + DISE  +++        +L       E+ +    +F    SH+++ PL  +   S  +
Sbjct: 269 VRDISERARQEERMKTTLAQLEAYTAELERSNHDLDEFAYIASHDLKEPLRGLHNHSRFL 328

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
                  L +       N + R    +  +VNDLL  S++  G+  L  +   +   V +
Sbjct: 329 LEDYEDKLDDDGVRR-LNRLVRLSQRMEKLVNDLLYFSRL--GRQQLAVKRADIGLIVKD 385

Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
            ++ ++L   E+    R      +P ++ D   + ++  N+++NAI +      + +S  
Sbjct: 386 VVATMELLLEERHA--RVVIDGRLPDVVCDAPRLTEVFRNLITNAIKYNDKPAPL-VSIG 442

Query: 731 HTS-----NEEV---ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
           +       +  V   +  VRD G G+     E   + F ++  SQ    +GTG GL   +
Sbjct: 443 YLERFVGKDGTVARNVFFVRDNGKGIPQEFHEDIFRIFKRLEKSQDSD-DGTGAGLTFVR 501

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIF 808
            ++  + G  ++ S    GT      
Sbjct: 502 KIIARHNGDIWLESEVGVGTTFYFTL 527



 Score = 54.6 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 40/367 (10%), Positives = 92/367 (25%), Gaps = 36/367 (9%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD-ILHIDPNNHIGDLLKRQNTWYGKT 147
           ID  G +K  +       G    + IG  +  +     H + + ++    +        T
Sbjct: 175 IDGRGTIKSFNPAAESMFGYAPQETIGRNIKMLMPEPYHSEHDGYLAHYRQTGEERIIGT 234

Query: 148 TL----WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK-RLDK 202
           T         G    + + ++ + +    + F G     IV             K  L +
Sbjct: 235 TRMVSGRRKSGIVFPIEVSISVV-VSGETKTFVG-----IVRDISERARQEERMKTTLAQ 288

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
             ++  E+++ +  +++  Y        P      +    L +Y    DD        L+
Sbjct: 289 LEAYTAELERSNHDLDEFAYIASHDLKEPLRGLHNHSRFLLEDYEDKLDDDGVRRLNRLV 348

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
              +       D    +             Q  + +  +          +      E   
Sbjct: 349 RLSQRMEKLVNDLLYFSRLGR---------QQLAVKRADIGLIVKDVVATMELLLEERHA 399

Query: 323 PETVD-KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
              +D + P            + N     +        +   G L   +      D    
Sbjct: 400 RVVIDGRLPDVVCDAPRLTEVFRNLITNAIKYNDKPAPLVSIGYLERFVGK----DGTVA 455

Query: 382 KPVMLYRSDRTCIAASARLHTIQW----------NRENSLAMTFIPFEKANQFPENMPQN 431
           + V   R +   I         +           +      +TF+    A    +   ++
Sbjct: 456 RNVFFVRDNGKGIPQEFHEDIFRIFKRLEKSQDSDDGTGAGLTFVRKIIARHNGDIWLES 515

Query: 432 GIEPEDV 438
            +     
Sbjct: 516 EVGVGTT 522


>gi|157146994|ref|YP_001454313.1| phosphate regulon sensor protein [Citrobacter koseri ATCC BAA-895]
 gi|157084199|gb|ABV13877.1| hypothetical protein CKO_02771 [Citrobacter koseri ATCC BAA-895]
          Length = 431

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 75/427 (17%), Positives = 158/427 (37%), Gaps = 37/427 (8%)

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             +L       I     L  + W     L +         +        G+    +  + 
Sbjct: 33  WFLLASVTGLLIWHFWNLLRLSW----WLWVDMSMTPPPGRGSWEPLLYGLHQMQLRNKK 88

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            +R++   + +  S  E+  D + +   +G I   N    ++ G    D   +     L 
Sbjct: 89  RRRELGNLIKRFRSGAESLPDAVVLTTEDGGIFWCNGLAQQVLGLRWPDDNGQNILNLLR 148

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
                    +   + + D  + L  +        + L +R++           +   D++
Sbjct: 149 YP------EFTQYLKTRDFIRPLNLVLNT----GRHLEIRVMPY---TDQQLLMVARDVT 195

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  Q +                + +F A VSHE+RTPLT + G+ E+++ Q        +
Sbjct: 196 QMHQLEG--------------ARRNFFANVSHELRTPLTVLQGYLEMMQEQPLEGATREK 241

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                + +    + +  +V  LL +SKIE+    L  E V +   +       Q  + +K
Sbjct: 242 A---LHTMREQTHRMEGLVKQLLTLSKIEAAPALLLNERVDVPMMLRVVEREAQALSQQK 298

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
                      +  +L +   ++    N++ NA++ TP+G  I +   H ++      V 
Sbjct: 299 H-TFTFEVDARL-SVLGNEEQLRSAISNLVYNAVNHTPAGTHITVRWQHVTHG-AEFSVE 355

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G G+    + +  + F ++  ++  +  G+GLGL + K  ++ +  +  I S+P KGT
Sbjct: 356 DNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHALNHHESRLIIDSSPGKGT 415

Query: 803 LIEIIFP 809
               + P
Sbjct: 416 RFSFVLP 422


>gi|148657170|ref|YP_001277375.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp.
           RS-1]
 gi|148569280|gb|ABQ91425.1| PAS/PAC sensor signal transduction histidine kinase [Roseiflexus
           sp. RS-1]
          Length = 704

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 91/574 (15%), Positives = 200/574 (34%), Gaps = 37/574 (6%)

Query: 251 DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310
            +     + P                          +     + +++ + + L+ +    
Sbjct: 142 AEARGLTRSPYEGDFGDWFDLALILGLTAFTSRLLSESLERSRAHARANEQALAQQTE-- 199

Query: 311 LSAYFDEGENLTPETVDKCPI-PFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLST 368
                   E          P     ++ H      A+   L  T Y     ++      T
Sbjct: 200 ---ALRLSEERYRILAANLPDSAVLIFDHDLRYVLADGPELAATGY-----LKEKIEGRT 251

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
           L +    +    ++  +       C +A           +   A  +IP    +      
Sbjct: 252 LCEVVSSAFAEQVEGNLRAVLSGRCFSAELPY------GDRIYAYYYIPLV--DDRGMVK 303

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
               +       R  +  +     QL  + E   D I  ++    ++  + +V ++ G  
Sbjct: 304 YAMVLARNVTAQRQAEADLRASEAQLRMLAENMGDAIVQLDSHLNVVYVSPSVRRVLGCE 363

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            ED+  K     +  +    +   + E         +         ++  + L   ++ L
Sbjct: 364 PEDVAGKQIAALVSPDDAPAVMAAIEEARESGAAA-IRVEYRFRNHQQMCIWLEAEVRLL 422

Query: 549 PFS----SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
             +        L+M D++  K+ + +        E++++    F   VSH++++PL  I 
Sbjct: 423 YDAHQHFEGAILSMRDVTRRKEVEAERERLIAELEQKNAELERFTYTVSHDLKSPLITIQ 482

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           GF   +  Q        R +     I  +   +  ++ DLL++S+I  G+++   + V  
Sbjct: 483 GFLGYL-EQDIRNGDTDRALSDIRRISAAARRMEHLLQDLLELSRI--GRVSAEPQTVPF 539

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG- 723
           +  V EA+ L+     E++  I    A ++P +  D R + ++  N++ NAI F  +   
Sbjct: 540 NMIVQEALELIAGRIAERQARITV--APDMPLVHGDRRRLAEVVQNLVDNAIKFCDNQTV 597

Query: 724 -QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
            +I I     ++ E I  VRD GVG+     ++    F ++      + EGTG+GL + +
Sbjct: 598 PEIEIGVHAVASNEAIFFVRDNGVGIDPRYHDQIFGLFNKLDP----QSEGTGVGLTIVR 653

Query: 783 AMVDANMGKFYIFST-PAKGTLIEIIFPLYDTSH 815
            +++ + G+ ++ S     G       P   T  
Sbjct: 654 RIIEVHGGRVWVESAGRGAGATFFFSLPTIHTQQ 687



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/264 (7%), Positives = 51/264 (19%), Gaps = 14/264 (5%)

Query: 70  SENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP 129
           SE  +               D                G    K+ G  LC+V      + 
Sbjct: 204 SEERYRILAANLPDSAVLIFDHDLRYVLADGPELAATGYLKEKIEGRTLCEVVSSAFAEQ 263

Query: 130 NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRV 189
                  +     +  +    P              +P+              +      
Sbjct: 264 VEGNLRAVLSGRCFSAE---LPYGDRIYAYY----YIPLVDDRGMVKYAM--VLARNVTA 314

Query: 190 DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL---RMKNKVSSLTEY 246
                A  +  + +   L E             ++         +     ++        
Sbjct: 315 QRQAEADLRASEAQLRMLAENMGDAIVQLDSHLNVVYVSPSVRRVLGCEPEDVAGKQIAA 374

Query: 247 YAHKDD--VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
               DD   +         S  +++  +  F          +     L +  +     + 
Sbjct: 375 LVSPDDAPAVMAAIEEARESGAAAIRVEYRFRNHQQMCIWLEAEVRLLYDAHQHFEGAIL 434

Query: 305 HRNHPSLSAYFDEGENLTPETVDK 328
                +     +         +++
Sbjct: 435 SMRDVTRRKEVEAERERLIAELEQ 458


>gi|149280459|ref|ZP_01886578.1| sensory box histidine kinase/response regulator [Pedobacter sp.
           BAL39]
 gi|149228771|gb|EDM34171.1| sensory box histidine kinase/response regulator [Pedobacter sp.
           BAL39]
          Length = 769

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 109/774 (14%), Positives = 251/774 (32%), Gaps = 89/774 (11%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTW--YGKTTLWP 151
           +   +    +  G     +IG R  +    LH  P  + I  +++    +          
Sbjct: 23  ITLANRATLEAWGRDMS-VIGKRFNEALPELHDQPFESLIRQVMRSGEPYHALNDRADIM 81

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGI--------------VHVNRVDNDPRA-- 195
           I         + +  P++    E  G   +                +  +      +   
Sbjct: 82  INEELQTYFYNFSYQPLFGEEGETIGVVCYATNVTEQENARLSEIKLRHSTDLAQMQRKL 141

Query: 196 --LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS-----------PPPHLRMKNKVS- 241
              G RL             +S V  E                    P    ++ + ++ 
Sbjct: 142 AIEGARLATWSIDPETKIGHYSPVLNEMLGHSGAVPLTYQEQLAQISPEFRQQVVDAIAH 201

Query: 242 ----SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDF--------------HTINLNQY 283
                      +    L T +   L +    +  +E                        
Sbjct: 202 TIRTGEDYDVTYSQRRLDTGELVWLRALGRPVKNEEMSISLISGVIMDVTLQVRATQEIQ 261

Query: 284 TKKQYFGTLQNNSKESFEYLSHRNHPSLSA--YFDEGENLTPETVDKCPIPFFVYSHGNL 341
              +             E +S  N     +    +  E      + + P    V    +L
Sbjct: 262 QLHEEARESNEELAVINEEMSASNEELTESYHLLELSEGRFRNIIVQAPFAICVIRAEDL 321

Query: 342 FY--ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399
                N  +L L   K V+ +E       + +A ++ +    + +    +     A  A 
Sbjct: 322 IVSEVNDRYLELVGKKRVE-LEGKNIWDGVPEAAEVYEPVMQQVIRRAVA---FHAKEAE 377

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459
           L+ ++  +   + + F+     +   E      +  +  +  + ++ +E    ++   +E
Sbjct: 378 LYLLRQGKPTQVFVDFVYEPVCDTKGEVSAIMVVGIDVSEKVLARQAVEEMEERIRLAVE 437

Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL 519
           A   G    +     L  +    ++FG P+    R+           S+         + 
Sbjct: 438 AAEMGTFDYDYGTQELLGSERFYEIFGVPIGS-SREEVINTYHPEDRSLSAEAHERAKTS 496

Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAK 575
                +       +    +  +R                  T+ DI+E+K  +       
Sbjct: 497 GK---ILYEARLMSGAGSMRWVRFQSNVYFDGGGNPVRTLGTVLDITEFKALQ------- 546

Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
                    K DF++  SHE++TPLT++    ++++  +  P     +        +S +
Sbjct: 547 -------QQKDDFISIASHELKTPLTSLKASLQLLERMKDQPNPLS-FPRLITQAAKSMD 598

Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695
            + ++V+DLL++S+I  G+M +  +   +D+ +    +  +   + K+  I+T+      
Sbjct: 599 KISELVDDLLNVSRINEGQMLIRKDWFDIDDLLHSCCATFREN-SGKQFPIQTTAG---L 654

Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755
           ++ AD   ++Q+ +N++SNAI + P    I +      +  V + VRD G G++  ++  
Sbjct: 655 KVFADEHRIEQVLVNLISNAIKYAPESAVINL-IAVQISSSVKVEVRDNGPGISQEKIPH 713

Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
               + +  +S   +  G GLGL ++  +V  + G+  + S   +G+      P
Sbjct: 714 LFDRYYRGDSSGI-QVSGLGLGLYISADIVRRHGGEIGVESRLNEGSTFWFTLP 766



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 30/280 (10%), Positives = 78/280 (27%), Gaps = 21/280 (7%)

Query: 321 LTPETVDKCPIPFFVYSHGN--LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
           +  + ++  P P ++ S     +  AN + L          +        L   P+L D 
Sbjct: 1   MFRDMIEGSPYPVYLVSGDELIITLANRATLEAWG--RDMSVIGKRFNEAL---PELHDQ 55

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRE-NSLAMTFIPFEKANQFPENMPQNGIEPED 437
                +           A      I  N E  +    F       +  E +         
Sbjct: 56  PFESLIRQVMRSGEPYHALNDRADIMINEELQTYFYNFSYQPLFGEEGETIGVVCYATNV 115

Query: 438 VDT---RINKRKMEIEVM----QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490
            +    R+++ K+         Q    +E        I+ E  I   +  ++++ G+   
Sbjct: 116 TEQENARLSEIKLRHSTDLAQMQRKLAIEGARLATWSIDPETKIGHYSPVLNEMLGHSGA 175

Query: 491 -DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
             +  +     +       +   +   +       +           +L+ LR + + + 
Sbjct: 176 VPLTYQEQLAQISPEFRQQVVDAIAHTIRTGEDYDVTYSQR-RLDTGELVWLRALGRPVK 234

Query: 550 FSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
                    S  + D++   +   ++    + A + +   
Sbjct: 235 NEEMSISLISGVIMDVTLQVRATQEIQQLHEEARESNEEL 274



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/420 (10%), Positives = 103/420 (24%), Gaps = 62/420 (14%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMI--GMRLCDVSDILHIDPNNHIGDLLKRQNTW 143
           TW+ID    +   S  L + +G+     +    +L  +S        + I   ++    +
Sbjct: 150 TWSIDPETKIGHYSPVLNEMLGHSGAVPLTYQEQLAQISPEFRQQVVDAIAHTIRTGEDY 209

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF--GIVHVNRVDNDPRALGKRLD 201
              T       T   V +     P+ +     S   G    +    R   + + L +   
Sbjct: 210 -DVTYSQRRLDTGELVWLRALGRPVKNEEMSISLISGVIMDVTLQVRATQEIQQLHEEAR 268

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL---------------RMKN-------- 238
           +    L  I +  S+  +E  + +                        R ++        
Sbjct: 269 ESNEELAVINEEMSASNEELTESYHLLELSEGRFRNIIVQAPFAICVIRAEDLIVSEVND 328

Query: 239 ----------------KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQ 282
                            +       A   + +  +      +  +   E          Q
Sbjct: 329 RYLELVGKKRVELEGKNIWDGVPEAAEVYEPVMQQVIRRAVAFHAKEAELYLLRQGKPTQ 388

Query: 283 YTKKQYFGTLQNNSKESFE----YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH 338
                 +  + +   E        +            +E E      V+   +  F Y +
Sbjct: 389 VFVDFVYEPVCDTKGEVSAIMVVGIDVSEKVLARQAVEEMEERIRLAVEAAEMGTFDYDY 448

Query: 339 GNL-FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397
           G      +  F  +        + I      +++     D +              I   
Sbjct: 449 GTQELLGSERFYEIFG------VPIGSSREEVINTYHPEDRSLSAEAHERAKTSGKILYE 502

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
           ARL +      +   + F      +     +   G   +  + +     ++ +     SI
Sbjct: 503 ARLMS---GAGSMRWVRFQSNVYFDGGGNPVRTLGTVLDITEFK----ALQQQKDDFISI 555


>gi|147920929|ref|YP_685264.1| putative signal transduction histidine kinase [uncultured
           methanogenic archaeon RC-I]
 gi|110620660|emb|CAJ35938.1| putative signal transduction histidine kinase [uncultured
           methanogenic archaeon RC-I]
          Length = 534

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 111/536 (20%), Positives = 203/536 (37%), Gaps = 44/536 (8%)

Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
            S  F    +     ++  P  F  +S  G + YAN     L   +  ++      +  L
Sbjct: 2   ESLQFSGARDSLVNAIEHLPEAFLFFSTTGAILYANARARELL--EENENPSTVNAILGL 59

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
                     +     +          + R   +      + A+    +    +  E+  
Sbjct: 60  QTDEVSPSVKSEDSGGITLKSALKEPETGRQIYLNLLNTPAGAVMISNYSTTREEREDAK 119

Query: 430 QNGIEPEDVDTRINKRKMEIEV---MQLCSILEATS------DGIAIINREGIILST--- 477
                     T   + ++   +     L ++++         + I  +  +G I+     
Sbjct: 120 IIECNELLKLTNYVQSQITRSMNIDETLDAVVKNVPRMVGLENCIIFMIEDGEIVEIKTT 179

Query: 478 ----NR------AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
               NR       +  L          +P  V        + +  +  +        L  
Sbjct: 180 EGIRNRLRGMRIRMEDLIATKEAVDKSQPIVVEDVAQYKRLSSKMVDLLAPT---TGLIL 236

Query: 528 ITLGSTKEEKLLSLRII----------IKKLPFSSCYSLTMHD----ISEWKQEKNKLSH 573
                 K   ++ L             I +    S    T  D      E  Q K++L  
Sbjct: 237 PLAARGKVIGVMWLYNTKKPRRYSADDISRANALSNQVATAVDNAMLFDELSQAKSELEI 296

Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
           + +  +     K +F   +SHE+RTPLT I G++E++K+   GP+ N    +  + ID S
Sbjct: 297 SYERLKSLDRMKMEFFTLISHELRTPLTTIKGYAELLKDGTLGPV-NDEQRDRLSRIDAS 355

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693
            + +  IV  L D+S + S +      PVSL+E + E +  +   A+ K++ I       
Sbjct: 356 VDRLTGIVESLSDLSGVASRQYAGEKIPVSLNELIEEVVRGIDFLADLKKLKITLDVPLT 415

Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753
           +P I AD   ++Q+ LN+L+NAI +TP GGQI IS     +  +++ VRDTG+G+   ++
Sbjct: 416 LPMISADRSRIQQVLLNVLNNAIKYTPDGGQISISVRDECD-HLLIAVRDTGIGIPKEDI 474

Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           E     F           +G GLGL +++ +V+++ GK +  S P KG+   I  P
Sbjct: 475 ENIFSGFYHSGYKLSYEYKGAGLGLAISRKIVESHGGKIWADSEPGKGSTFFISLP 530


>gi|124022255|ref|YP_001016562.1| two-component sensor histidine kinase [Prochlorococcus marinus str.
           MIT 9303]
 gi|123962541|gb|ABM77297.1| two-component sensor histidine kinase [Prochlorococcus marinus str.
           MIT 9303]
          Length = 685

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 77/394 (19%), Positives = 170/394 (43%), Gaps = 40/394 (10%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            ++    ++  S++   +DG  +++  G I+  N    +LF +   ++  +     L + 
Sbjct: 289 EELTAAQVKQQSLIATMADGALLLDEVGQIVLANPTARRLFRWEGRNLEGQELLNELPEI 348

Query: 505 TPSVMNHYLTEILSL-DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
             + ++  L  +L        L       T+  +++   +  +        ++T+ D++ 
Sbjct: 349 IANELHDPLQSLLRNIGESNDLRCSLEEPTRTLRIVLQSVRDQSGETLKGIAITVQDLTR 408

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
                           + ++ +S F++ VSHE+RTPL  I  + E + +     L     
Sbjct: 409 --------------EVELNAAQSRFISNVSHELRTPLFNIKSYVETLHD-LGDQLSEEEK 453

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            E+    +   + +  +VND+LD+S++ESG+  + FEP+ L  A+ + +   +L A++K+
Sbjct: 454 KEFLGVANSETDRLARLVNDVLDLSRLESGR-TVQFEPMDLRPAIEQTLRNYRLNADDKQ 512

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-------- 735
           I I  +  + +P IL +   + Q+  N++ N + F+ +GG +++      +         
Sbjct: 513 IHIELNTDDELPTILGNWDLLLQVLDNLVGNGLKFSRAGGSLMVRAYTWPDSCKMSPIES 572

Query: 736 --------------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
                         ++ + V DTG G+   + +     F ++ N+      GTGLGL + 
Sbjct: 573 SKSAPHCEFFSPLPKLRVEVADTGHGINQDDQQHIFDRFYRVENAVHTEA-GTGLGLSIV 631

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
           + +++ + G+  + S    GT      PL  T  
Sbjct: 632 RGIIEKHGGQIRMASEVDLGTTFWFDLPLEQTDA 665


>gi|158520443|ref|YP_001528313.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfococcus oleovorans Hxd3]
 gi|158509269|gb|ABW66236.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfococcus oleovorans Hxd3]
          Length = 598

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 81/378 (21%), Positives = 164/378 (43%), Gaps = 28/378 (7%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           R  K+ ++        ++ +   G+   ++ G I   N A  ++ G  +     K     
Sbjct: 241 RSAKKSLQDTSAIKDQVVTSLPVGLIATDKHGKIAFYNSAAERITGLDLAQARGKEPDTV 300

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SL 556
           L           L E L L      EK       E K++ + I   K+           L
Sbjct: 301 LP-----RHLCGLKESLDLG-ESIFEKEMECEFTENKIVPVSISASKIINEEGQFVGQVL 354

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            + D+ E ++ ++++   +K+A        +  A V+HEIR PL++I G +   K++   
Sbjct: 355 IIRDLGEVRRLQDEIRRKEKLA-----AIGELAAGVAHEIRNPLSSIKGIASYYKSKFED 409

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
              +    E A  +    + +  ++++LL+ ++       L+ +   ++E +  +  LV+
Sbjct: 410 GSED---KEMAGVMIEEVDRLSRVISELLEFARP----TKLNRKLSDMNELLKHSTRLVE 462

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
             A  K++ I+ +  +       D   + Q  LN+  NA+    SGG++ +S++  +N  
Sbjct: 463 QEAAAKKVDIQLNLTSESIEADVDPDRLTQCFLNLFLNALQAMESGGRLTVSSSTGANGN 522

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           V + ++D G G++  +L K   P+           +GTGLGL +   +++A+ G+  + S
Sbjct: 523 VAIDIKDNGSGISAEDLSKIFDPYFTTKP------KGTGLGLAIVHKIIEAHQGQIKVRS 576

Query: 797 TPAKGTLIEIIFPLYDTS 814
           T  +GT+  I  PL D+ 
Sbjct: 577 TIGQGTVFSIALPLGDSE 594


>gi|291613794|ref|YP_003523951.1| multi-sensor signal transduction histidine kinase [Sideroxydans
            lithotrophicus ES-1]
 gi|291583906|gb|ADE11564.1| multi-sensor signal transduction histidine kinase [Sideroxydans
            lithotrophicus ES-1]
          Length = 1095

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 100/799 (12%), Positives = 231/799 (28%), Gaps = 92/799 (11%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            I A G + ++++      G    ++IG    D               + ++         
Sbjct: 304  ISAEGKVTDVNKATEVVTGRSRSELIGTDFSDYFTEPGRAREG-YRQVFQQGFVTDYPLA 362

Query: 149  LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
            +   +G      +   A    +   E  G   F                +  ++ F  L 
Sbjct: 363  IRRKDGHI--TDVLYNAGVYRNETGEVLGV--FAAARDITERKRAELKLRESEQAFRMLA 418

Query: 209  EIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYA--HKDDVLKTEKYPLLTS 264
            E           +            +      +V                      L+ +
Sbjct: 419  ENSPDVIVRYDREGRRTYVNPEFERVNHLSAEQVYGKKPLELSTELKPRADEFTGKLMQA 478

Query: 265  EESSLPEQEDFHTINLNQYTKKQYFGTL------QNNSKESFEYLSHRNHPSLSAYFDEG 318
             ES    + D   I  +      +   +       +       +    +         E 
Sbjct: 479  MESGTVTKVDMDWIGNDGKLICWFVRVVPEFDAGGDVVSALTIWSDISDRKRAEQELQEQ 538

Query: 319  ENLTPETVDKCPIPFFVYSHGNLFYANPSFLL-LTKYKSV-------------------- 357
            +  +   +          ++  +  A  S +  +  Y+++                    
Sbjct: 539  DRHSQSLLRLSRNLERSQAYSEVVNAARSEVREILGYQNLWTYLLSDDRKYFTALVASGP 598

Query: 358  --DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
              D +    G + L            +   +                +      ++    
Sbjct: 599  ESDTVMSEEGTARLTIEGDRMLEEIAEAKEIVIVADARTDERVNKEIVAQLGNRTIVNVP 658

Query: 416  IPFEKA---------------------------NQFPENMPQNGIEPEDVDTRINKRKME 448
            I                                                 + +  ++++ 
Sbjct: 659  IALFDRHLGTVGMGTFGDEGVRIPSVSEQKYLMALASHMAAAIDRIHLLAERKKAEKELR 718

Query: 449  IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP-VEDILRKPFTVFLEQNTPS 507
                   ++LE T D I   +++G     ++ ++ + G+    D++ K        +T  
Sbjct: 719  ELNNDFVTLLENTGDFIYFKDKDGRFRFCSQTLASVTGHRNWRDMIGKHDLEVFPADTAR 778

Query: 508  VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-----CYSLTMHDIS 562
            +       I        L K       + +   +      +                D++
Sbjct: 779  IYYEEELPIFQEGKP-LLNKTNPYYDDKGRQGWVNTNKWPVFSDDKKSVIGIFGISRDVT 837

Query: 563  EWKQEKNKLSHAKKIAEK-----------ESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
            E KQ ++++    +  E+            +     F   VSH++RTPL AI GFS +++
Sbjct: 838  ELKQAEDRIMALNRDLERRVAERTAQLEVANKELEAFSYSVSHDLRTPLRAIDGFSHILQ 897

Query: 612  NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
                G L +         +  + N +  +++D+L  S+  +G++ + F  + +++   E 
Sbjct: 898  EDYAGKLDDE-GKRLLKVVRDNANRMGLLIDDILKFSR--AGRIEISFSEIDMEKLAHEV 954

Query: 672  ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
               ++L      + +      +IP    D   + Q+ +N+LSNAI F+ +     I    
Sbjct: 955  FDELRLAIAGGGLEMDI---GHIPSARGDRAMMHQVFVNLLSNAIKFSRNREPARIEVGA 1011

Query: 732  TSNEEVIL-RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
            T+  +  +  V+D G G     ++K    F ++ +      EGTG+GL + K ++  + G
Sbjct: 1012 TTGSDETIYHVKDNGAGFDMQYVDKLFGVFQRLHSM--EEFEGTGIGLAIVKRIITRHGG 1069

Query: 791  KFYIFSTPAKGTLIEIIFP 809
            + +      +G  I    P
Sbjct: 1070 RVWAEGKINEGATIYFALP 1088



 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 32/285 (11%), Positives = 80/285 (28%), Gaps = 20/285 (7%)

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365
           R    L A      +L   ++D       + + G +   N +  ++T     + I     
Sbjct: 278 RIAQELHAASLYTRSLIEASLDPL---VTISAEGKVTDVNKATEVVTGRSRSELIGTD-- 332

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
                         A +                    I+    +   + +      N+  
Sbjct: 333 ----FSDYFTEPGRAREGYRQVFQQGFVTDYPL---AIRRKDGHITDVLYNAGVYRNETG 385

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
           E +       +  + +  + K+         + E + D I   +REG     N    ++ 
Sbjct: 386 EVLGVFAAARDITERKRAELKLRESEQAFRMLAENSPDVIVRYDREGRRTYVNPEFERVN 445

Query: 486 GYPVEDILRKPFTVFLEQ--NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
               E +  K       +           L + +       ++   +G+  + KL+   +
Sbjct: 446 HLSAEQVYGKKPLELSTELKPRADEFTGKLMQAMESGTVTKVDMDWIGN--DGKLICWFV 503

Query: 544 IIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSH 584
            +     +    +       DIS+ K+ + +L    + ++     
Sbjct: 504 RVVPEFDAGGDVVSALTIWSDISDRKRAEQELQEQDRHSQSLLRL 548



 Score = 75.8 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/159 (12%), Positives = 57/159 (35%), Gaps = 8/159 (5%)

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
           P   ++ E  + +   +++    +   S++EA+ D +  I+ EG +   N+A   + G  
Sbjct: 265 PFQRLDTEFTENKRIAQELHAASLYTRSLIEASLDPLVTISAEGKVTDVNKATEVVTGRS 324

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
             +++   F+ +  +   +       ++         +       K+  +  +       
Sbjct: 325 RSELIGTDFSDYFTEPGRA--REGYRQVFQQGF--VTDYPLAIRRKDGHITDVLYNAGVY 380

Query: 549 PFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
              +           DI+E K+ + KL  +++     + 
Sbjct: 381 RNETGEVLGVFAAARDITERKRAELKLRESEQAFRMLAE 419



 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/276 (10%), Positives = 72/276 (26%), Gaps = 18/276 (6%)

Query: 69  DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID 128
           +SE  F               D  G    ++ E  +     A ++ G +  ++S  L   
Sbjct: 409 ESEQAFRMLAENSPDVIV-RYDREGRRTYVNPEFERVNHLSAEQVYGKKPLELSTELKPR 467

Query: 129 PN---NHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVH 185
            +     +   ++   T       W      L     +  +P +    +        I  
Sbjct: 468 ADEFTGKLMQAMESG-TVTKVDMDWIGNDGKLICWF-VRVVPEFDAGGDVV--SALTIWS 523

Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE 245
                       +  D+    L  + +     +     + + +S    +     + +   
Sbjct: 524 DISDRKRAEQELQEQDRHSQSLLRLSRNLERSQAYSEVVNAARSEVREILGYQNLWTY-- 581

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
                   L ++     T+  +S PE +   +         +    L+  ++     +  
Sbjct: 582 --------LLSDDRKYFTALVASGPESDTVMSEEGTARLTIEGDRMLEEIAEAKEIVIVA 633

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNL 341
                     +    L   T+   PI  F    G +
Sbjct: 634 DARTDERVNKEIVAQLGNRTIVNVPIALFDRHLGTV 669



 Score = 48.5 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/169 (12%), Positives = 43/169 (25%), Gaps = 6/169 (3%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYA-FKMIGMRLCDVSDILHID-PNNHIGDLLKRQNT 142
           F +  D  G  +  S+ L    G+     MIG    +V               + +    
Sbjct: 734 FIYFKDKDGRFRFCSQTLASVTGHRNWRDMIGKHDLEVFPADTARIYYEEELPIFQEGKP 793

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIY-SRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
              KT  +  +       ++    P++    +   G   FGI                L+
Sbjct: 794 LLNKTNPYY-DDKGRQGWVNTNKWPVFSDDKKSVIGI--FGISRDVTELKQAEDRIMALN 850

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK 250
           +        +     V  ++ + FS             +   +      
Sbjct: 851 RDLERRVAERTAQLEVANKELEAFSYSVSHDLRTPLRAIDGFSHILQED 899


>gi|60683572|ref|YP_213716.1| putative two-component system sensor kinase/response regulator
           fusion protein [Bacteroides fragilis NCTC 9343]
 gi|60495006|emb|CAH09824.1| putative two-component system sensor kinase/response regulator
           fusion protein [Bacteroides fragilis NCTC 9343]
          Length = 557

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 99/394 (25%), Positives = 164/394 (41%), Gaps = 28/394 (7%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTN-------------RAVSKLFG----Y 487
           RK+E       +IL      + +I+ +  +L TN             + V  L       
Sbjct: 34  RKLENVNCLFDAILTHIHAYVLVIDSDFKVLKTNYYDLTHLSPDGKEKRVGDLLQCRNAL 93

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
             +                ++ N +  +    DL+ +L          +  + +  +   
Sbjct: 94  SAKGGCGTHAFCQECPVRGAIGNAFRQKKEFTDLQSSLNIAIDEHEFVKCDVMISGVFMT 153

Query: 548 LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
           L       LT+HDI+  KQ +  L+ AK+ AE     KS FLA +SHEIRTPL AI+GFS
Sbjct: 154 LDSEERMVLTVHDITSIKQTEEALAEAKEKAENADRSKSAFLANMSHEIRTPLNAIVGFS 213

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
           E++              +Y   +  +  L+L +VND+LD+SKIE+G +   +  V ++  
Sbjct: 214 ELLA----AANTEEEKQKYLEILHTNSELLLQLVNDILDLSKIEAGTLEFVYSDVDINLL 269

Query: 668 VSEAISLVQLYANEKR-ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726
           +++   L ++       + I T        +  D   + Q+  N +SNAI FT  G  I 
Sbjct: 270 LNDLEQLFRMKIGSNSPVQIITESGLPSCMVHTDRNRIAQVVSNFVSNAIKFTTEGS-IR 328

Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
           I    + N  +   V DTG G++  +LE     F ++ + +     G GLGL + K +V+
Sbjct: 329 IGYQSSENG-LRFYVSDTGSGISADKLEGVFDRFVRLQSDKN----GNGLGLSICKTIVN 383

Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820
              G+    S   KG+      P +    P   I
Sbjct: 384 KLGGEIGAESEVGKGSTFWFTLPEHSDIKPKVII 417


>gi|94266055|ref|ZP_01289774.1| PAS:ATP-binding region, ATPase-like:Histidine kinase, HAMP
           region:Histidine kinase A-like [delta proteobacterium
           MLMS-1]
 gi|93453377|gb|EAT03805.1| PAS:ATP-binding region, ATPase-like:Histidine kinase, HAMP
           region:Histidine kinase A-like [delta proteobacterium
           MLMS-1]
          Length = 615

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 102/560 (18%), Positives = 206/560 (36%), Gaps = 39/560 (6%)

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
            +           ++   +      +               N    FE  +       SA
Sbjct: 66  REAGLQDYCLEAGAASATRLTVIAPDGRVLADSAEPPAAMENHAGRFEVAAALAGERASA 125

Query: 314 YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKY-KSVDDIEIAGGLSTLLDA 372
                           P+       G +     + L LT   +++ +I        LL A
Sbjct: 126 VRLSRSTGEDTMYRALPL----VREGTVIGVLRTALPLTAIDRALAEILRRLAAGGLLIA 181

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
             ++    +    L R      A + R     +  +           +            
Sbjct: 182 LAVALVAWLVARRLSRPLEEMRAGADRFADGSFEGK---------ISEEGAEELAGLARA 232

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
           +        +    +E +  QL +++ +  +G+  ++  G +L  NRA S+L    +E +
Sbjct: 233 MNRMAAQLALRLHTIECQRTQLQAVVGSMVEGVITVDGGGRLLDLNRAASELLDLRLEQV 292

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS- 551
             +   V +     S +N  +   L++      E   L    +E+  + R    +L  + 
Sbjct: 293 RGRSIEVAIR---NSGLNKLIRRTLAVTEPVEGEFTLLDGRGQERFCTARGNRLQLEEAV 349

Query: 552 -SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
                L + D                   +  + + DF+A VSHE++TP+T+I GF+E +
Sbjct: 350 TPGAVLVISD--------------LTRLRRLENLRRDFVANVSHELKTPITSIEGFAETL 395

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES--GKMNLHFEPVSLDEAV 668
            +         +   +A  I      +  IV DLL +S+IE    +  +  + + L E +
Sbjct: 396 LDGALAE--PEQARRFATIILEQARRLHAIVEDLLSLSRIEQEGRRREVPLQNLPLLETL 453

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
             A+++    A  K++ +       + R   +   ++Q  +N++ NAI +  +GG+I +S
Sbjct: 454 RAAVAVCAERAAVKKMPLTVEGPEAL-RAWINPALLEQALVNLIDNAIKYGKAGGEITVS 512

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
              T+  E+++ VRD G G+    L +  + F ++  ++     GTGLGL + K +   +
Sbjct: 513 AA-TAAGEILIGVRDRGPGIPPEALSRIFERFYRVDKARSTSLGGTGLGLAIVKHIAQVH 571

Query: 789 MGKFYIFSTPAKGTLIEIIF 808
            G+  + S P +GT+  I  
Sbjct: 572 HGRIEVSSRPEEGTIFTIHL 591



 Score = 39.2 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 33/299 (11%), Positives = 80/299 (26%), Gaps = 15/299 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D  G L +++    + +     ++ G  +        ++    I   L       G+ T
Sbjct: 268 VDGGGRLLDLNRAASELLDLRLEQVRGRSIEVAIRNSGLNK--LIRRTLAVTEPVEGEFT 325

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           L   +G             +        G     ++ ++ +    R    R D   +  H
Sbjct: 326 LL--DGRGQERFCTARGNRLQLEEAVTPGA----VLVISDLTRLRRLENLRRDFVANVSH 379

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           E+K   +S+E     +       P      + +++    A +   +  +   L   E+  
Sbjct: 380 ELKTPITSIEGFAETLLDGALAEP--EQARRFATIILEQARRLHAIVEDLLSLSRIEQEG 437

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
              +     + L +  +      +        +       P     +     L    V+ 
Sbjct: 438 RRREVPLQNLPLLETLRAAV--AVCAERAAVKKMPLTVEGPEALRAWINPALLEQALVNL 495

Query: 329 CPIPFFVYSHG---NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
                     G    +  A  +  +L   +          LS + +     D      +
Sbjct: 496 IDNAIKYGKAGGEITVSAATAAGEILIGVRDRGPGIPPEALSRIFERFYRVDKARSTSL 554


>gi|294506872|ref|YP_003570930.1| Signal transduction histidine kinase, membrane [Salinibacter ruber
           M8]
 gi|294343200|emb|CBH23978.1| Signal transduction histidine kinase, membrane [Salinibacter ruber
           M8]
          Length = 668

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 100/623 (16%), Positives = 202/623 (32%), Gaps = 16/623 (2%)

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY 246
            R   D                +    H    + +    + +      R+      L   
Sbjct: 44  ARPTPDDSLRLGPAASIAEVRVDANADHVPDRRGETVTVAGRVTAGRGRLAVSRPRLVAV 103

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
                 +       L+     SL  +            +    G +      +   L   
Sbjct: 104 QDRTAGIHVRLPDSLVVERGDSLRVRGVVTHAYGLTRLRGAE-GRVVEAGARTPAPLPLT 162

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
            + +     +         +           +  L     +     +    +      GL
Sbjct: 163 VNTAAGEQHEGRLARVRGRIAGKGTN-RGGDYLRLQAQGTASPAQIEVFVAERHGDRFGL 221

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
               +   +     +                 R       +    +              
Sbjct: 222 DRFAEGDAIEVTGVVGQYDFEAPYDEYYQIEPR-GRDDLAQVGWPSTYLRAALLILAGGG 280

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
            +    +       +   +++E    +   + EAT +GIA+   +G I+  N +++++  
Sbjct: 281 LVGAIVVIGLRAAVQRRTQELEESRARFRRLAEATLEGIALHETDGTIVDANASLAQMMD 340

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
              E ++ K  T  L        +              +E   + +      + +     
Sbjct: 341 TDREALIGKDITALLASAPSVHWDRA-----EGRTDAPVETELVHAGGTTTPVEVETRTV 395

Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
                  +   + D+SE K+ ++++  AK+ AE+ +  KS  +  +SHE+RTP+T I G+
Sbjct: 396 TTGDEPVHVCAVRDLSERKEWEDEMLRAKQEAEQAARLKSTLIHNMSHELRTPITTITGY 455

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
           +EVI  +   P     +  +A  I  SG  + D +  +LD+++IESG + +  + VS+  
Sbjct: 456 AEVIMEEAEEP-----HRSFALQIRESGRRLSDTLQSVLDMAQIESGTLEVTVQEVSVPG 510

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726
            V + +        +K +        +   +  D   + +I  N++ NA+ FT  G +  
Sbjct: 511 VVRDVVDRHAQAIEDKALTAELDVPEDC-VVATDRALLYRILNNLVQNAVKFTEKG-RCQ 568

Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
           +     +   V + VRDTGVG+         +PF Q         EG GLGL L K +VD
Sbjct: 569 VRVEPVAFG-VRIHVRDTGVGIDPAFRPHLFEPFKQESEGVAREYEGIGLGLALTKRLVD 627

Query: 787 ANMGKFYIFSTPAKGTLIEIIFP 809
              G   + S   +G+   +  P
Sbjct: 628 LLGGAIEVDSAKGEGSAFTVELP 650


>gi|156742623|ref|YP_001432752.1| multi-sensor signal transduction histidine kinase [Roseiflexus
           castenholzii DSM 13941]
 gi|156233951|gb|ABU58734.1| multi-sensor signal transduction histidine kinase [Roseiflexus
           castenholzii DSM 13941]
          Length = 712

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 104/572 (18%), Positives = 201/572 (35%), Gaps = 34/572 (5%)

Query: 251 DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310
             ++  E Y    S   S P       + L          +       +      +   +
Sbjct: 149 AGIVTAEMYGWTRSPYESEPGDWFDLALILGLTAFAARLLSESLQRSRALARAHAKTLAA 208

Query: 311 LSAYFDEGENLTPETVDKCPI-PFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLST 368
            +A     E          P     ++ H      +    L  T Y S   +E       
Sbjct: 209 QAAALRASEERYRILAANLPDSAVLIFDHDLRFVLSEGPELAATGY-SKAALEGRTLYEA 267

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
           L  A        I+ V+  R     I    R++             +      +      
Sbjct: 268 LPHAFAAQVEGNIRAVLSGRRFSAEIPYEDRIY------------HYHYVPLIDDSGAVR 315

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
               +     + R  +  ++    QL  I E   D I  +N    ++  + +V ++FGY 
Sbjct: 316 YGMILARNVTEQRRAQMALQEREAQLRLITENMGDAITQLNAAFTVIYASPSVQRVFGYL 375

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            E I     +V +  +    +   L  I       T         + +    L   I+ L
Sbjct: 376 PETINGASISVLIHPDDAPGVTMALKRIRDEGASAT---RIEYRGRSDHCRWLESEIRAL 432

Query: 549 PFSSCY----SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
             ++       LT  D++E KQ + +        E++++    F    SH++++PL  I 
Sbjct: 433 YGTNGQFTGAILTTRDVTERKQIEVERERLIAELEQKNAELERFTYTASHDLKSPLITIQ 492

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           GF   ++          R  +    I  + + +  ++NDLL++S+I  G+++   + V  
Sbjct: 493 GFLGYLERDAQ-EGNTKRMQDDIRRIGAAVHKMERLLNDLLELSRI--GRVSAAPQYVPF 549

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724
           +  V EA+ L+     E++  I  S A  +P +  +   + ++  N++ NA+ F  +   
Sbjct: 550 NVVVQEALELLVGRIAERQARI--SVAPEMPVVYGERTRLVEVVQNLVDNALKFCDNQYT 607

Query: 725 --IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
             I I     S    I  VRD G+G+     E+    F ++      R  GTG+GL + +
Sbjct: 608 PDITIGVLRESQGSSIFFVRDNGIGIEPKYHEQIFGLFNKLDP----RSAGTGVGLTIVR 663

Query: 783 AMVDANMGKFYIFS-TPAKGTLIEIIFPLYDT 813
            +++ + G+ ++ S  P  G       P+  T
Sbjct: 664 RIIEVHGGRIWVESGGPGSGATFYFSLPIAAT 695



 Score = 55.0 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 34/390 (8%), Positives = 92/390 (23%), Gaps = 38/390 (9%)

Query: 70  SENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCD-VSDILHID 128
           SE  +               D                G     + G  L + +       
Sbjct: 216 SEERYRILAANLPDSAVLIFDHDLRFVLSEGPELAATGYSKAALEGRTLYEALPHAFAAQ 275

Query: 129 PNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNR 188
              +I  +L  +      +   P E    +       +P+   +       G  +     
Sbjct: 276 VEGNIRAVLSGR----RFSAEIPYEDRIYH----YHYVPLIDDSGAVR--YGMILARNVT 325

Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP---PPHLRMKNKVSSLTE 245
                +   +  + +   + E      +     + +               +    +   
Sbjct: 326 EQRRAQMALQEREAQLRLITENMGDAITQLNAAFTVIYASPSVQRVFGYLPETINGASIS 385

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
              H DD            +E +   + ++   + +    +     L   + +    +  
Sbjct: 386 VLIHPDDAPGVTMALKRIRDEGASATRIEYRGRSDHCRWLESEIRALYGTNGQFTGAILT 445

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365
               +     +         +++                  + L    Y +  D++    
Sbjct: 446 TRDVTERKQIEVERERLIAELEQKN----------------AELERFTYTASHDLKSPLI 489

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
                      D        +    R   AA  ++  +  +      +      + +  P
Sbjct: 490 TIQGFLGYLERDAQEGNTKRMQDDIRRIGAAVHKMERLLND-----LLELSRIGRVSAAP 544

Query: 426 ENMPQNGIEPEDVDT---RINKRKMEIEVM 452
           + +P N +  E ++    RI +R+  I V 
Sbjct: 545 QYVPFNVVVQEALELLVGRIAERQARISVA 574



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/245 (8%), Positives = 53/245 (21%), Gaps = 7/245 (2%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
            ++A   +   S  + +  G     + G  +  +      D       L + ++     T
Sbjct: 354 QLNAAFTVIYASPSVQRVFGYLPETINGASISVLIHPD--DAPGVTMALKRIRDEGASAT 411

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
            +     ++    ++     +Y  N +F+G                    +RL  +    
Sbjct: 412 RIEYRGRSDHCRWLESEIRALYGTNGQFTGA--ILTTRDVTERKQIEVERERLIAELEQK 469

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
           +   +  +                    ++             D          +    +
Sbjct: 470 NAELERFTYTASHDLKSPLITIQGFLGYLERDAQEGNTKRMQDDIRRIGAAVHKMERLLN 529

Query: 268 SLPEQEDFHTINLNQYTKKQ---YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
            L E      ++               L+       E  +  +                E
Sbjct: 530 DLLELSRIGRVSAAPQYVPFNVVVQEALELLVGRIAERQARISVAPEMPVVYGERTRLVE 589

Query: 325 TVDKC 329
            V   
Sbjct: 590 VVQNL 594


>gi|116748561|ref|YP_845248.1| PAS/PAC sensor signal transduction histidine kinase
           [Syntrophobacter fumaroxidans MPOB]
 gi|116697625|gb|ABK16813.1| PAS/PAC sensor signal transduction histidine kinase
           [Syntrophobacter fumaroxidans MPOB]
          Length = 805

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 100/777 (12%), Positives = 239/777 (30%), Gaps = 79/777 (10%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D  G + + +E   + +G    +++G      +    +        ++       G+   
Sbjct: 53  DCDGLIVDCNERFLEIVGAPRERLLG-----FNMATSLRNEEMRAAVIAG---LSGEPNY 104

Query: 150 WPIEGTNL----YVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +  +  ++      PI      + + +  F G    G+              +   +   
Sbjct: 105 FEGDYRSVTANKVTPIRAMFSRVNTDDGGFMGA--VGLFEDVSAQKQSEEALRESREFLG 162

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSP--PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
            +         V+   + +            R + ++   T+Y     + +         
Sbjct: 163 KIVASISDPIFVKDRYHRLILVNDAECALAGRTREEILGRTDYDFFPKEQVDIFWEKDEA 222

Query: 264 SEESSLPEQEDFHTINLNQYTK-----KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
             E+    + +    +    T+     K  +     N           +           
Sbjct: 223 VFETGEENENEEQITDGQGRTRTIVTKKSLYTDSFGNKFIVGVIRDITDRKEAELALQAA 282

Query: 319 ENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIA----------GGLS 367
                + ++  P     +     + Y N +   +T  +  D +              G  
Sbjct: 283 HQELQDIIEFLPDATLVIGRDKKVTYWNHAIEEMTGVRKSDILGKGDYAYAKAFYGNGRP 342

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
            L+D     +          +   T +   A +      +   L  T  P    +     
Sbjct: 343 MLIDLVMAEEPEIESRYDFVKRIGTTVYGEAYVPGAYRGKGAYLWSTAAPLIGRD--GNI 400

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFG 486
           +       +  D +  +  ++    +   + E  SD I + + +   ++  N     L+G
Sbjct: 401 IGFIQSIRDISDRKRAEEALKENEKKYRQLFETVSDAILVCDGDSRRLIDVNERALSLYG 460

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
           Y  E+ L   +     +   S +   + E LS    Q   +      K+  +    I   
Sbjct: 461 YSREEFLDLSYRDITAEPDESDV--VIKETLSGVGIQVPLR--THRKKDGTVFPAEISSS 516

Query: 547 KLPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD----------------- 587
               +        + DI+E K+ + +LS  +   E     ++                  
Sbjct: 517 TFELAGRKVICGVVRDITERKRVERELSAYRDGLEHLIEARTAELARANERLKVEIEERR 576

Query: 588 --------FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639
                   F   V+H++++P   I G ++ +  Q    L + +   Y + I +    + +
Sbjct: 577 RAKERLKLFAYSVAHDLKSPAVGIHGIAKRLHRQTRDVL-DEKSRSYCSQILKVSEHIAE 635

Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA 699
           +V+ +     I + +  L FE ++L E  +       +  N +RI        +   + A
Sbjct: 636 LVDKINVY--IATKEARLSFERIALKEIFAMLRDEFSVQFNNRRI--DWELPESDVVVTA 691

Query: 700 DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL-RVRDTGVGMTNYELEKAMK 758
           D  S+ ++  N++ NA+ +        I   +   ++  +  V D G G+   + E+  +
Sbjct: 692 DRLSLLRVFRNLVDNALKYGGEHLS-RIRIGYEEGKDCHILSVADDGRGLRGADSERIFE 750

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII----FPLY 811
            F +         EG GLGL + + + + + G+ ++   P  G    +      P+ 
Sbjct: 751 VFQR--QETSKGVEGAGLGLTIVREIAEQHNGRVWMEPVPNGGASFFVTISKDLPVS 805



 Score =  103 bits (258), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 34/301 (11%), Positives = 84/301 (27%), Gaps = 18/301 (5%)

Query: 283 YTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNL 341
            ++K  +  L    +E  E          +    + E       +  P+    +   G +
Sbjct: 1   MSQKPSYEELAGRVRELEE--DALARRRTNEVLRKSEERYRMIFNYSPLGIVHFDCDGLI 58

Query: 342 FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401
              N  FL +        +          +      N  ++  ++               
Sbjct: 59  VDCNERFLEIVGAPRERLLG--------FNMATSLRNEEMRAAVIAGLSGEPNYFEGDYR 110

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
           ++         +  +           M   G+  +    + ++  +      L  I+ + 
Sbjct: 111 SVT--ANKVTPIRAMFSRVNTDDGGFMGAVGLFEDVSAQKQSEEALRESREFLGKIVASI 168

Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
           SD I + +R   ++  N A   L G   E+IL +    F  +    +       +     
Sbjct: 169 SDPIFVKDRYHRLILVNDAECALAGRTREEILGRTDYDFFPKEQVDIFWEKDEAVFETGE 228

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---YSLTMHDISEWKQEKNKLSHAKKIA 578
               E+       + +  ++         S         + DI++ K+ +  L  A +  
Sbjct: 229 ENENEEQIT--DGQGRTRTIVTKKSLYTDSFGNKFIVGVIRDITDRKEAELALQAAHQEL 286

Query: 579 E 579
           +
Sbjct: 287 Q 287



 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 44/428 (10%), Positives = 112/428 (26%), Gaps = 33/428 (7%)

Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL--RMKNKVSSL 243
                     + ++ ++++  +                I         +    + ++   
Sbjct: 20  DALARRRTNEVLRKSEERYRMIFNYSPLGIVHFDCDGLIVDCNERFLEIVGAPRERLLGF 79

Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303
               + +++ ++      L+ E +         T N      +  F  +  +       +
Sbjct: 80  NMATSLRNEEMRAAVIAGLSGEPNYFEGDYRSVTAN-KVTPIRAMFSRVNTDDGGFMGAV 138

Query: 304 SHRNHPSLSAYFDEGENLTPE----TVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVD 358
                 S     +E    + E     V     P FV   +  L   N +   L      +
Sbjct: 139 GLFEDVSAQKQSEEALRESREFLGKIVASISDPIFVKDRYHRLILVNDAECALAGRTREE 198

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
            +             ++         +    +               + +          
Sbjct: 199 ILGRTDY--DFFPKEQVDIFWEKDEAVFETGEENENEEQIT------DGQGRTRTIVTKK 250

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
                   N    G+  +  D +  +  ++    +L  I+E   D   +I R+  +   N
Sbjct: 251 SLYTDSFGNKFIVGVIRDITDRKEAELALQAAHQELQDIIEFLPDATLVIGRDKKVTYWN 310

Query: 479 RAVSKLFGYPVEDIL--------------RKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
            A+ ++ G    DIL               +P  + L       +      +  +     
Sbjct: 311 HAIEEMTGVRKSDILGKGDYAYAKAFYGNGRPMLIDLVMAEEPEIESRYDFVKRIGTTVY 370

Query: 525 LEKITLGSTKEEKLLSLRII---IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE 581
            E    G+ + +           I +      +  ++ DIS+ K+ +  L   +K   + 
Sbjct: 371 GEAYVPGAYRGKGAYLWSTAAPLIGRDGNIIGFIQSIRDISDRKRAEEALKENEKKYRQL 430

Query: 582 SSHKSDFL 589
               SD +
Sbjct: 431 FETVSDAI 438



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 51/168 (30%), Gaps = 9/168 (5%)

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
                    +E + +  R     +     +   I   +  GI   + +G+I+  N    +
Sbjct: 8   EELAGRVRELEEDALARRRTNEVLRKSEERYRMIFNYSPLGIVHFDCDGLIVDCNERFLE 67

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           + G P E +L       L           +  +         E      T   K+  +R 
Sbjct: 68  IVGAPRERLLGFNMATSLRNEEMRA--AVIAGL--SGEPNYFEGDYRSVTAN-KVTPIRA 122

Query: 544 IIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
           +  ++               D+S  KQ +  L  +++   K  +  SD
Sbjct: 123 MFSRVNTDDGGFMGAVGLFEDVSAQKQSEEALRESREFLGKIVASISD 170



 Score = 51.2 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 32/281 (11%), Positives = 64/281 (22%), Gaps = 33/281 (11%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMR---------------LCDVSDILHIDPNNHI 133
           I     +   +  + +  G     ++G                 L D+      +  +  
Sbjct: 300 IGRDKKVTYWNHAIEEMTGVRKSDILGKGDYAYAKAFYGNGRPMLIDLVMAEEPEIESRY 359

Query: 134 GDLLKRQNTWYGKT-TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192
             + +   T YG+        G   Y+     A P+  R+    GF     +        
Sbjct: 360 DFVKRIGTTVYGEAYVPGAYRGKGAYLWST--AAPLIGRDGNIIGFIQ--SIRDISDRKR 415

Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF-----SQQSPPPHLRMKNKVSSLTEYY 247
                K  +KK+  L E       V                S   + R +    S  +  
Sbjct: 416 AEEALKENEKKYRQLFETVSDAILVCDGDSRRLIDVNERALSLYGYSREEFLDLSYRDIT 475

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
           A  D+     K  L       +      H          +   +    +           
Sbjct: 476 AEPDESDVVIKETLSGVG---IQVPLRTHRKKDGTVFPAEISSSTFELAGR-KVICGVVR 531

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSF 348
             +     +   +   + ++             L  AN   
Sbjct: 532 DITERKRVERELSAYRDGLEHL----IEARTAELARANERL 568


>gi|309792280|ref|ZP_07686752.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides
           DG6]
 gi|308225821|gb|EFO79577.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides
           DG6]
          Length = 810

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 98/656 (14%), Positives = 219/656 (33%), Gaps = 52/656 (7%)

Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP--PHLRMKNKVSSLTEYYAHKD 251
           R   +RL      L  +      +          Q     P + M    S      A + 
Sbjct: 36  RQGLQRLRAGLPDLILLDLQLPDISGLDLLRIFAQDGYDVPVILMTAHGSENIAVEAFRL 95

Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
                   P   +E  +             +  ++       +  +   E          
Sbjct: 96  GARNYLIKPFSDTEARA-----VIDQALRERRLRRDKERLTASLQQRVQELTVLSRIGKS 150

Query: 312 SAYFDEGENLTPETVD------KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365
                + E L    V+      +    F +                   +    + +A  
Sbjct: 151 VTGLMDQEQLLERIVEAGVYITQAEEGFLLLRDEQHDELYLRAAKNLGEQRAQSLRMA-- 208

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDR----TCIAASARLHTIQWNRENSLAMTFIPFEKA 421
           ++  L    +     ++             T     A L       E  + +  +  +++
Sbjct: 209 INDTLAGQVVRTAKPVRTDKTRAGMNLKVKTGFLVRAILQVPLILGEKVIGVLAVDNQQS 268

Query: 422 NQF--PENMPQNGIEPEDVDTRINKRKM----EIEVMQLCSILEATSDGIAIINREGIIL 475
           ++     +        +     I   ++     +   +   +     D I +++ +  I 
Sbjct: 269 DRTFSENDQYLLATLADYAAIAIENARLYEQVRLSERRYKDLFANAYDLIFMLDGDLCIT 328

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
           + N+A S++ GYP+ D++ KP   F           +L  +L+       E   +  ++E
Sbjct: 329 TMNKAGSQITGYPLHDLIAKPLQTFCTPEAWDAAAVHLRALLAGHNVPPFEVELINQSQE 388

Query: 536 EKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
              L +   + +      S       ++++ ++ + +L  ++K+     S     +A V+
Sbjct: 389 PIYLEVSAHVMQNGSGKPSGLHCIARNLTDRRRLEQQLIQSEKL-----SAIGQLVAGVA 443

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HE+  PLT++ G++++    +     +P   +    I         IV +LL  ++    
Sbjct: 444 HELNNPLTSVSGYAQLTLRNKD---LSPETRQDIEQIHAQSERAAKIVQNLLIFAR---- 496

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713
           +       V ++E +  A++L         I ++     N+   +AD   ++Q+ LN+++
Sbjct: 497 EHTPERSTVVINEVLRSALALQAYQLRVDNIAVQLDLDPNLSTTIADPHQLQQVFLNLIT 556

Query: 714 NAIHFT-PSGG--QIIISTTHTSNEE------VILRVRDTGVGMTNYELEKAMKPFGQIP 764
           NA H     GG   + + T     +E      + + V DTG+G+    L K   PF    
Sbjct: 557 NARHAMVERGGAGTLTLRTRVVPAQELGQEPMIRIEVADTGIGIPERNLRKIFNPFFTTK 616

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820
                 G+GTGLGL +   ++  + G+ +  S    GT + +  P+   +   + +
Sbjct: 617 P----IGQGTGLGLSICFGIIQEHDGQIWAESQQGAGTRVYVTLPVRQAALAQNVL 668



 Score = 40.0 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 22/282 (7%), Positives = 65/282 (23%), Gaps = 9/282 (3%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144
             + +D    +  +++   +  G     +I   L         D        L   +   
Sbjct: 317 LIFMLDGDLCITTMNKAGSQITGYPLHDLIAKPLQTFCTPEAWDAAAVHLRALLAGHNVP 376

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
                  I  +   + ++++A  + + + + SG     I               + +K  
Sbjct: 377 PFEVEL-INQSQEPIYLEVSAHVMQNGSGKPSGLH--CIARNLTDRRRLEQQLIQSEKLS 433

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
           +    +      +      +          +  +  +       H       +    L  
Sbjct: 434 AIGQLVAGVAHELNNPLTSVSGYAQLTLRNKDLSPETRQDIEQIHAQSERAAKIVQNLLI 493

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
                  +     IN    +              + +     N  +  A   + + +   
Sbjct: 494 FAREHTPERSTVVINEVLRSALALQAYQLRVDNIAVQLDLDPNLSTTIADPHQLQQVFLN 553

Query: 325 TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
            +        V   G       +  L T+     ++     +
Sbjct: 554 LITNARHA-MVERGGA-----GTLTLRTRVVPAQELGQEPMI 589


>gi|229030329|ref|ZP_04186376.1| hypothetical protein bcere0028_24010 [Bacillus cereus AH1271]
 gi|228730984|gb|EEL81919.1| hypothetical protein bcere0028_24010 [Bacillus cereus AH1271]
          Length = 590

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 95/519 (18%), Positives = 185/519 (35%), Gaps = 46/519 (8%)

Query: 312 SAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
           +  F   E      +   P+    +  +G+    N    ++T Y + + I     L  L 
Sbjct: 100 TMLFSRKEEELHTILQNMPVMVDALDYNGDFVLWNRECEIVTGYTAEEIIGNPNALQLLY 159

Query: 371 DAPKLSDNNAIKPVM----LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
                      K +         +      +  + TI W+                    
Sbjct: 160 PDRNYRHQIQTKFLTCGKNFRDWEMHLTCKNGEIKTIMWSN-----------ISEQFPVT 208

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
                 +  +    +  + +++ +  +L  I +A  D   +   +G I+         F 
Sbjct: 209 GYSYWAVGVDITHLKAIEEQLKQQTSELELIFKALPDLCFLTEDDGTIIDYKAGSPSKFY 268

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
            P E  + K F   L           + ++        +E           +        
Sbjct: 269 VPAEAFMGKKFFEVLPSPVAQQFQEAIHQVKEKGTNVIVEYPLTI---NGSVDFFEARCL 325

Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
            L       + + DI+E K+ +  L+ +  +A           A V+HE+R PLT I GF
Sbjct: 326 PLLHDK-IMIIVRDITERKKTEELLNKSDTLA-----AIGQLAAGVAHEVRNPLTVIKGF 379

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
            +         +      +Y + +      +  I+ + L I+K +     ++ E  ++ +
Sbjct: 380 IQ------LFQINKEDQEKYFDLMLSEIERIEAILQEFLSIAKTD----EMNTEQKNIYQ 429

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726
                +SL+   A    I +     +N   I      +KQ+ +NIL N+I   P+GG+I 
Sbjct: 430 IYKNVVSLMNTKAIMTNIQVELYAESNDISIECSENQLKQVFINILQNSIEAMPNGGKIT 489

Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
           I     +++ VI+ V D G+G+    +++  +PF         + +GTG+GL L+  +++
Sbjct: 490 IHIKEINDDGVIIHVIDEGIGIPEERIKRLGEPFY------STKEKGTGIGLMLSYKIIE 543

Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLYDT----SHPHD-CI 820
           ++ G   I S    GT + I  P   +    SH  D CI
Sbjct: 544 SHQGNISIMSEVGVGTTVTIYLPKVQSKESLSHCDDRCI 582


>gi|255011930|ref|ZP_05284056.1| two-component system histidine kinase [Bacteroides fragilis 3_1_12]
          Length = 543

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 104/512 (20%), Positives = 203/512 (39%), Gaps = 27/512 (5%)

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIAGG 365
                      G+ +  +  D  P+   V  + G +   N     L   +   D++   G
Sbjct: 48  GQRRALKKALVGDAVCRQLFDVWPLSILVLGADGKIERMN----KLLLEELQLDLKQVAG 103

Query: 366 LSTLLDAPKLSDNNAIKPVMLY-RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
              +     + D   + P  L            +    I+  R N   +         + 
Sbjct: 104 RQAVEIIELIQDKENLLPRFLKEIQSGKRNILFSTNCFIREPRSNISFLIQGGIVGIYES 163

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
              +         ++ R  +  + I + +   I           + E  ++  +      
Sbjct: 164 GRLIKMIVYLRNVLEERTQRHVLNIALSKTH-IFS------WSFDMERNLMVIDPRYFDY 216

Query: 485 FGYPVED--ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL- 541
              P +D  +  + F+  +  +   V+   L   L+ +L +           +       
Sbjct: 217 LKIPTQDYTLTMEQFSDLVHPDDRKVLFDALAGQLTGNLYEAP-VPYRLRRGDGGWEWFE 275

Query: 542 --RIIIKKLPFSSCYSLTMHDISEW-KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
                + +L       + +   ++  K  +++L+ A + A++    KS FLA +SHEIRT
Sbjct: 276 GQSTYVGQLSDLPFRIVGICMSTQRHKDIEDRLNDALRKAQRSDRLKSAFLANMSHEIRT 335

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
           PL AI+GFS ++ +++   L      EYA  I+++G L++ +++D+LD+SKIES  M  +
Sbjct: 336 PLNAIVGFSTLLVSEQSD-LRPEDIEEYAALIEKNGQLLMFLISDILDLSKIESNTMEFN 394

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718
               SL++  ++ I+ +Q    +  + +          I AD   ++Q+  N+++NAI F
Sbjct: 395 VSVFSLNKMFAD-IARMQRLNVKPGVELIADLPAEDVSITADPVRLEQVVNNLINNAIKF 453

Query: 719 TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
           T  G  I I       ++V L V DTG GM+   +    + F +  +      +GTGLGL
Sbjct: 454 TSRGS-IRIGYRRRGEKDVELFVEDTGKGMSEEVIAHVFERFYKGDSF----VQGTGLGL 508

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            + K +V+   G+    S   +G   E+  P+
Sbjct: 509 AICKTIVEHFGGEIRAESEVGEGARFEVCLPI 540


>gi|310824285|ref|YP_003956643.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309397357|gb|ADO74816.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 710

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 96/585 (16%), Positives = 188/585 (32%), Gaps = 41/585 (7%)

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
           +   +E     DD   + ++  +           D  + N                    
Sbjct: 2   LGRGSEVEFRIDDHGVSRRHARIVRTAEGTCHVSDLGSTNGTYVNGVAITSAELREGDRL 61

Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVD 358
                     S     +  E    + +    +  + ++        +     L       
Sbjct: 62  QIGTVTVFRFSNREQLEPREEQLRQALSAARVGIWDWNAAAGTVTWSEHVDRLLGLP--- 118

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
            +    G +  L       +      +L ++           + I+        ++    
Sbjct: 119 -LGTLSGRAMDLREVVHPGDMTRVREVLAQALERRSHVEME-YRIEPAGGGCRWLSCKGD 176

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
              +         G   +    +  ++++  +      I E+  DG+ I +  G I+  N
Sbjct: 177 VLCDGAGVPNRITGTVMDITARKTAEQELRRQ----ALIFESLYDGVVITDLRGQIIDWN 232

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
            +  ++FG      + +     L       +   +   L    R T E       K+  +
Sbjct: 233 PSAERMFGRGKAQSVGQTLFSVLHPGEVDPLTLPMLSALEGAGRWTGEVEF--RRKDGMV 290

Query: 539 LSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
                +   L  +      Y L   D++E K  + +L  + ++A   +       A V+H
Sbjct: 291 CCCESVAVPLRDTEGRAIAYILVHRDVTERKHLQARLVMSDRLASLGT-----LGAGVAH 345

Query: 595 EIRTPLTAIIGFSEVIKN--QRFGPLGNPRYIEYANYIDRS----GNLVLDIVNDLLDIS 648
           EI  PL  ++    +I    +R  P  +   +E    I R        +  IV DL   +
Sbjct: 346 EINNPLAYMLVNLHLIHGGLERLRPAVSASTVEQLQQIARETTEGAERIASIVQDLKVFA 405

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIA 708
           +   G+      PV +  +V  A  +        R  + T F   +  + A    + Q+ 
Sbjct: 406 R---GEQETRLGPVDVSRSVELACKMADNLV-RHRARLVTEFEP-VAMVEASESRLCQVF 460

Query: 709 LNILSNAIHFTPSG-----GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
           LN+L NA    P G      +I +     + E+V + V DTGVGM    L +   PF   
Sbjct: 461 LNLLLNAAQAIPEGEPADRHRITVRIRAQAPEQVAVLVEDTGVGMAPEVLARVFDPFFTT 520

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            +     GEGTGLGL +   ++++  G     S P +G+   ++ 
Sbjct: 521 KS----VGEGTGLGLSICHGIIESMGGTISAESEPGRGSTFRVVL 561



 Score = 55.4 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 45/420 (10%), Positives = 100/420 (23%), Gaps = 43/420 (10%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQNTWYGKT 147
            D  G + + +    +  G    + +G  L  V     +DP        L+    W G+ 
Sbjct: 222 TDLRGQIIDWNPSAERMFGRGKAQSVGQTLFSVLHPGEVDPLTLPMLSALEGAGRWTGEV 281

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH- 206
                +G  +    +  A+P+         +    +          +A     D+  S  
Sbjct: 282 EFRRKDG--MVCCCESVAVPLRDTEGRAIAY--ILVHRDVTERKHLQARLVMSDRLASLG 337

Query: 207 ---------------------------LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK 239
                                      L  ++   S+   E+    ++++     R+ + 
Sbjct: 338 TLGAGVAHEINNPLAYMLVNLHLIHGGLERLRPAVSASTVEQLQQIARETTEGAERIASI 397

Query: 240 VSSLTE-YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINL--NQYTKKQYFGTLQNNS 296
           V  L       ++  L              + +    H   L            +     
Sbjct: 398 VQDLKVFARGEQETRLGPVDVSRSVELACKMADNLVRHRARLVTEFEPVAMVEASESRLC 457

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLT--KY 354
           +     L +           +   +T     + P    V          P  L      +
Sbjct: 458 QVFLNLLLNAAQAIPEGEPADRHRITVRIRAQAPEQVAVLVEDTGVGMAPEVLARVFDPF 517

Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
            +   +    GL   +    +                +      R    +        + 
Sbjct: 518 FTTKSVGEGTGLGLSICHGIIESMGGTISAESEPGRGSTFRVVLRTVAGRAEDVT-RPIA 576

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII 474
            +P +        +     EP           ME EV    S   +  D + ++ ++G  
Sbjct: 577 LLPAQAPASPRTRVLVVDDEPNVTLALQRSLGMEHEV----STANSAVDALRLLGQDGRF 632


>gi|283784215|ref|YP_003364080.1| phosphate regulon two-component system, sensor kinase [Citrobacter
           rodentium ICC168]
 gi|212380328|gb|ACJ24904.1| PhoR [Citrobacter rodentium]
 gi|282947669|emb|CBG87224.1| phosphate regulon two-component system, sensor kinase [Citrobacter
           rodentium ICC168]
          Length = 435

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 75/427 (17%), Positives = 150/427 (35%), Gaps = 37/427 (8%)

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             +L       I     L  + W     L +         +        G+    +  + 
Sbjct: 33  WFLLASVTGLLIWHFWNLLRLSW----WLWVDRSMTPPPGRGSWEPLLYGLHQMQLRNKK 88

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            +R++   + +  S  E+  D + +   EG I   N    +L G    D   +     L 
Sbjct: 89  RRRELGNLIKRFRSGAESLPDAVVLTTEEGGIFWCNGLAQQLLGLRWPDDNGQNILNLLR 148

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
               +               +   +         + L +R++           +   D++
Sbjct: 149 YPEFTQYL----------KTRDFSRPLNLVLNTGRHLEIRVMPY---TDKQLLMVARDVT 195

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  Q +                + +F A VSHE+RTPLT + G+ E++  Q        +
Sbjct: 196 QMHQLEG--------------ARRNFFANVSHELRTPLTVLQGYLEMMHEQPLEGSTREK 241

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                  +      +  +V  LL +SKIE+  + L  E V +   +       Q  + +K
Sbjct: 242 A---LLTMREQTFRMEGLVKQLLTLSKIEASPVLLLNEQVDVPMMLHMVEREAQTLSQQK 298

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
                    N + ++L +   ++    N++ NA++ TP G  I +      +      + 
Sbjct: 299 H-TFSFDIDNQL-KVLGNEEQLRSAISNLVYNAVNHTPEGTHITVCWRAVPHG-AEFSIE 355

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G G+    L +  + F ++  ++  +  G+GLGL + K  ++ +  +  I S P KGT
Sbjct: 356 DNGPGIAAEHLPRLTERFYRVDKARSRQTGGSGLGLAIVKHALNHHESRLTIDSEPGKGT 415

Query: 803 LIEIIFP 809
               + P
Sbjct: 416 RFSFVLP 422


>gi|107022943|ref|YP_621270.1| multi-sensor hybrid histidine kinase [Burkholderia cenocepacia AU
           1054]
 gi|105893132|gb|ABF76297.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia cenocepacia AU
           1054]
          Length = 526

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 75/379 (19%), Positives = 155/379 (40%), Gaps = 21/379 (5%)

Query: 444 KRKMEIEVMQLC--SILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
            R ++    +    +++E+ +D  + +++ +G + + N    ++ GY   +I+   F+ F
Sbjct: 16  ARDLQHRFAEFRFQTVVESITDYAVFMLDPDGNVATWNAGAQRIKGYRAAEIVGHHFSRF 75

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSL 556
              +  +        +         E       K+       + I  +  ++     +  
Sbjct: 76  YPPDAIAAGRPS-HGLEVAAAHGHFEDEGWRVRKDGTQFWASVTITPVRDATHALCGFIK 134

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
              D++E K+ +          E  +   S F+A ++HE+R  L  +     V+++    
Sbjct: 135 ITRDMTERKRLEE--------LEASTHRLSVFIAMLAHELRNHLAPLRNSVGVLQS---L 183

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
           P   P   +  + ++R    +  +V+DLLD+ +I +GK+ L   PV++ + V   +  +Q
Sbjct: 184 PDPAPVLAQCRDAVNRQVAQLTRLVDDLLDVGRITAGKVELDARPVTVRDIVCRGVESIQ 243

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
                +   IR     +   +  D   + Q+  N+L NA  F+P GG+I +         
Sbjct: 244 PKLAARGQWIRVDLPTDSVVLHGDDARLVQVLHNLLDNASKFSPHGGRIDVGARI-DGPS 302

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           V + V D GVG+    LE     F Q   + +    G GLGL + ++ V+ + G+    S
Sbjct: 303 VAISVVDHGVGIAPGALETIFDLFEQEGATGRSPSGGFGLGLAICRSFVELHGGRIAAES 362

Query: 797 -TPAKGTLIEIIFPLYDTS 814
             P  G    +  P+   +
Sbjct: 363 GGPGHGATFTVWLPIAQVA 381



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/276 (10%), Positives = 70/276 (25%), Gaps = 26/276 (9%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN--HIGDLLKRQNTW 143
            + +D  G +   +    +  G  A +++G           I      H  ++      +
Sbjct: 40  VFMLDPDGNVATWNAGAQRIKGYRAAEIVGHHFSRFYPPDAIAAGRPSHGLEVAAAHGHF 99

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG----KR 199
             +      +GT  +  + +   P+        GF    I            L     + 
Sbjct: 100 EDEGWRVRKDGTQFWASVTI--TPVRDATHALCGF--IKITRDMTERKRLEELEASTHRL 155

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP------------HLRMKNKVSSLTEYY 247
                   HE++   + +      + S   P P              ++   V  L +  
Sbjct: 156 SVFIAMLAHELRNHLAPLRNSVGVLQSLPDPAPVLAQCRDAVNRQVAQLTRLVDDLLDVG 215

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT----LQNNSKESFEYL 303
                 ++ +  P+   +      +     +       +    T    L  +     + L
Sbjct: 216 RITAGKVELDARPVTVRDIVCRGVESIQPKLAARGQWIRVDLPTDSVVLHGDDARLVQVL 275

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG 339
            +    +       G       +D   +   V  HG
Sbjct: 276 HNLLDNASKFSPHGGRIDVGARIDGPSVAISVVDHG 311


>gi|328953464|ref|YP_004370798.1| multi-sensor signal transduction histidine kinase [Desulfobacca
           acetoxidans DSM 11109]
 gi|328453788|gb|AEB09617.1| multi-sensor signal transduction histidine kinase [Desulfobacca
           acetoxidans DSM 11109]
          Length = 740

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 83/429 (19%), Positives = 165/429 (38%), Gaps = 32/429 (7%)

Query: 397 SARLHTIQWNRENSLAMTFI--PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
              L          + +                  +  ++ +    + +  ++E      
Sbjct: 323 EVYLRQFLLQGGIIILILMAGGVIIFYESRWSAALEMEVQRKTAALKKSTDELEKSEKLY 382

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
            S++E+  D I  ++    I+S NR  +K FGY    I+ K     L  +    + H + 
Sbjct: 383 KSLVESAEDSILTVDIHKEIVSINRFGAKFFGYTPRGIIGKSLAAILPGSANVTLGHQID 442

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM---HDISEWKQEKNKL 571
           ++      + +    +      K   L I +  +         +   HD++  ++ + +L
Sbjct: 443 DVFQTQTGRRVFLEVVL---GGKEYHLNINLTPIIEGEQVVSVLLIAHDVTMARKMEEQL 499

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
              +K+A           A V+HEI  PL  I+G+++++  +      + +  +    I+
Sbjct: 500 YFTEKLA-----SLGQLAAGVAHEINNPLAIILGYTDMLLEK---TEADSKQYKILQTIE 551

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
           R GN    IV +L+  ++              ++  +   + +V+     ++I  +    
Sbjct: 552 RQGNNCKRIVENLMTFARA----PEEVQHDTDVNRNIEMVLEVVRNTLFTRKIEYQLELE 607

Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-EVILRVRDTGVGMTN 750
             +PR+  D   ++Q+ LN+++NA+   P GG++ I+T    N  EV +   DTGVG+  
Sbjct: 608 ERLPRVNGDAAQLQQVFLNLITNAVKAMPEGGRLTIATRSLKNGAEVQILFIDTGVGIKK 667

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS----TPAK---GTL 803
             L K   PF       +  GEGTGLGL ++  ++    G     S       K   G+ 
Sbjct: 668 EHLPKIYDPFFTT----RKVGEGTGLGLSVSYGIITKFGGSINCVSKAQEEVGKEESGST 723

Query: 804 IEIIFPLYD 812
             I  P   
Sbjct: 724 FTITLPAAQ 732


>gi|146310529|ref|YP_001175603.1| phosphate regulon sensor protein [Enterobacter sp. 638]
 gi|145317405|gb|ABP59552.1| PAS/PAC sensor signal transduction histidine kinase [Enterobacter
           sp. 638]
          Length = 431

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 74/427 (17%), Positives = 156/427 (36%), Gaps = 37/427 (8%)

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             +L       I     L  + W     L +                  G+    +  + 
Sbjct: 33  WFLLAAVTGLLIWHFWNLLRLSW----WLWVDRSMTPPPGSGSWEPLLYGLHQMQMRNKK 88

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            +R++   + +  S  E+  D + +   EG I   N    +L G    D   +     L 
Sbjct: 89  RRRELGSLIKRFRSGAESLPDAVILTTEEGTIFWCNGLAQQLLGLRWPDDNGQNILNLLR 148

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
               ++             ++   +         + L +R++         + +   D++
Sbjct: 149 YPEFTLYL----------KKREFTRPHNLVLNNGRHLEIRVMPY---SDKQWLMVARDVT 195

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  Q +                + +F A VSHE+RTPLT + G+ E+++ Q        +
Sbjct: 196 QMHQLEG--------------ARRNFFANVSHELRTPLTVLQGYLEMMQEQTLEGAPREK 241

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                + +    + +  +V  LL +SKIE+       E + +   +       Q  +++K
Sbjct: 242 A---LHTMREQTHRMEGLVKQLLTLSKIEAAPTLALNETIDVPMMLRVVEREAQTLSHKK 298

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
              +     + + ++L     ++    N++ NA++ TP G  I++   H         V 
Sbjct: 299 H-QLTFEVDSAL-KVLGSEEQLRSAISNLVYNAVNHTPEGTHIVVRWQHVPTG-AEFSVE 355

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G G+    + +  + F ++  ++  +  G+GLGL + K  ++ +  +  I STP KGT
Sbjct: 356 DNGPGIGPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHALNHHDSRLDIQSTPGKGT 415

Query: 803 LIEIIFP 809
               + P
Sbjct: 416 RFSFVIP 422


>gi|53713918|ref|YP_099910.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
 gi|52216783|dbj|BAD49376.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
          Length = 1022

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 124/741 (16%), Positives = 240/741 (32%), Gaps = 49/741 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGN-YAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQNTW 143
            W  D    L     E     G      +                   I  D+L   +  
Sbjct: 156 LWEFDVRTRLFYA--ENEPLNGYDPTQALTIEDYKKQIHPEDWKKAEIILLDMLSGCDCL 213

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPI-YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
           Y       +  T+ +    L   P     + +   + GF      R +N      K L +
Sbjct: 214 YEIDFRIRLSDTSEWQYCKLNCTPYERGTDGKVIKYVGF------RKNNTELQRRKLLQE 267

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
              +   +      VE +   +F  +            +  +   + + + ++     + 
Sbjct: 268 NILNSIPLPIHIKDVEDDFRYVFCNEESMRMFGTHEGETVCSVLDSEQAERMQKTDLEVF 327

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
           T+ +     +     I  +  +                  L+ R    L         + 
Sbjct: 328 TTGKPYFGVE---RIILKDGRSYDTIVRKNIIYDGTKRLLLNIRWDQKLQNDLKRRAKVL 384

Query: 323 PETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
             +++      + Y       +           ++D              P         
Sbjct: 385 SMSMEVMNAYTWFYEPSKQRVSFGEGFDKIGRNALDINSFEKFAEC--VHPDDRQRFVDT 442

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
              + + D        R                +              +G+       + 
Sbjct: 443 MDAVLKQDSGEWDIEYRADLRGNGNYEWWKTRGVLETSILNDHPYQYVSGMSISIESYKQ 502

Query: 443 NKRKMEIEVMQL-------CSILEATSDGIAIINREGIILSTN----RAVSKLFGYPVED 491
            +  +     +L         +L  T+ G+A I  + ++   N     +      Y   +
Sbjct: 503 TELTLLKNKEKLNKLIRQNELVLNNTNSGLAYITTDYVVQWENVSVCSSSLSFEAYKRGE 562

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
              K            V++  L       ++  LE          +++ +          
Sbjct: 563 CCYKSAHNRTSPCDNCVLSKVLVSRQMEKIKFHLE--------NNRIVEVLATPVFNESE 614

Query: 552 --SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                 + + DI++ ++   +L  AK +AE+    KS FLA +SHEIRTPL AI+GFS++
Sbjct: 615 EIDGIVIRVDDITDRERMIEELRQAKLLAEQSDKLKSAFLANMSHEIRTPLNAIVGFSDL 674

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           + N            EY   I+ +  L+L ++ND+LD+SK+ESG + L +E   L E   
Sbjct: 675 LMNSEEQGDKE----EYMQIINTNNELLLKLINDILDLSKLESGSVELKYEEFDLAEYFD 730

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
              S ++      ++ +      ++ R+  D   V Q+  N ++NAI +TP G    I  
Sbjct: 731 SMASSMKQRVTNPKVQLVAVNPYSVCRVRLDKNRVAQVVTNYVTNAIKYTPQG---TIEM 787

Query: 730 THT-SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
            +   +  + L VRDTG+G+   +  K    F ++        +GTGLGL + KA+ ++ 
Sbjct: 788 GYEVVDAGIRLYVRDTGIGIPEEKKRKVFHRFEKLD----EFAQGTGLGLSICKAITESM 843

Query: 789 MGKFYIFSTPAKGTLIEIIFP 809
            G     S  ++G+L   + P
Sbjct: 844 GGSVGFESEYSRGSLFWAVLP 864



 Score = 44.6 bits (104), Expect = 0.061,   Method: Composition-based stats.
 Identities = 19/143 (13%), Positives = 46/143 (32%), Gaps = 10/143 (6%)

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRKPFTVFLEQNTPSVMNHYL 513
            +I E    G+ + + +G ++  N    K+ G    +D+L          N P  M   L
Sbjct: 16  QTIYENLPVGMELYDGDGYLIEINSVGLKMMGVKDKQDMLGINIFE--NPNIPVEMKRRL 73

Query: 514 TEILSLDLRQTLEKIT-------LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQ 566
               ++      +          + S      +++ +++ +      +     D++E   
Sbjct: 74  RAGENIRFTVKYDFDLAKAHYPTVLSGISYFEITVSVVLDENKEIDKFLFIAQDVTEAVH 133

Query: 567 EKNKLSHAKKIAEKESSHKSDFL 589
            +  L  +K+            L
Sbjct: 134 TQEILRQSKQKTALAMQAAEVML 156


>gi|229130818|ref|ZP_04259767.1| hypothetical protein bcere0015_52460 [Bacillus cereus BDRD-Cer4]
 gi|228652623|gb|EEL08512.1| hypothetical protein bcere0015_52460 [Bacillus cereus BDRD-Cer4]
          Length = 590

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 88/501 (17%), Positives = 175/501 (34%), Gaps = 41/501 (8%)

Query: 314 YFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                E      +   P+    +  +G+    N    ++T Y + + I     L  L   
Sbjct: 102 LLSRKEEELHTILQNMPVMVDALDYNGDFVLWNRECEIVTGYTAEEIIGNPNALQLLYPD 161

Query: 373 PKLSDNNAIKPVM----LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
                    K +         +      +  + TI W+                      
Sbjct: 162 HNYRHQIQKKFLTCGKNFRDWEMHLTCKNGEIKTIMWSN-----------ISEQFPVTGY 210

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
               +  +    +  + +++ +  +L  I +A  D   +   +G I+         F  P
Sbjct: 211 SYWAVGVDITHLKAIEEQLKQQTSELELIFKALPDLCFLTEDDGTIIDYKAGSPTKFYVP 270

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            E  + K F   L  +        + ++        +E           +         L
Sbjct: 271 AEAFMGKKFYEVLPTSVAQQFQEAINQVKEKGTNVIVEYPLTL---NGSIDFFEARCLPL 327

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                  + + DI+E K+ +  L+ +  +A           A V+HE+R PLT I GF +
Sbjct: 328 LHDK-IMIIVRDITERKKTEELLNKSDTLA-----AIGQLAAGVAHEVRNPLTVIKGFIQ 381

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
                    +       Y + +      +  I+ + L I+K +     ++ E  ++ +  
Sbjct: 382 ------LFQINKEDQERYFDLMLSEIERIEAILQEFLSIAKTD----EINTEKKNIYQIF 431

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
              +SL+   A    I +     +    I      +KQ+ +NIL N+I   P+GG I I 
Sbjct: 432 KNVVSLMNTKAIMTNIQVELFTGDKDIIIECSENQLKQVFINILQNSIEAMPNGGGISIH 491

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
               +++ VI+ V D G+G+    +++  +PF         + +GTG+GL L+  +++++
Sbjct: 492 IKEINDDGVIIHVIDEGIGIPEERIKRLGEPFY------STKEKGTGIGLMLSYKIIESH 545

Query: 789 MGKFYIFSTPAKGTLIEIIFP 809
            G   I S    GT + I  P
Sbjct: 546 QGTISIRSEVGVGTTVTIYLP 566


>gi|209515313|ref|ZP_03264180.1| Hpt sensor hybrid histidine kinase [Burkholderia sp. H160]
 gi|209504294|gb|EEA04283.1| Hpt sensor hybrid histidine kinase [Burkholderia sp. H160]
          Length = 721

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 97/429 (22%), Positives = 173/429 (40%), Gaps = 26/429 (6%)

Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450
              +  +    TI  +    LA+          F   +                +++   
Sbjct: 50  GWTLVYAFTWRTILRDIGTRLAVYIAAMLLVVSFMWLLLLMLDHKLFKPDYQRSQRIFES 109

Query: 451 VMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
                +++ A   G A+++  +G IL              +  L + +      + P + 
Sbjct: 110 EALNRTMVAAAPSGFALLSLEQGDILL-------------QSNLMRTYESNTHPDEPGLH 156

Query: 510 NHYLT--EILSLDLRQTLEKITLGSTKEEKL--LSLRIIIKKLPFSSCYSLTMHDISEWK 565
              L+  +          +        + ++  L + ++  K         +  DI+  K
Sbjct: 157 TRLLSLYDRSPGAPAWQSDLEMPLRLADGRVDDLLVSMVRTKYRGKEVLLCSFSDITTLK 216

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
             + KL  A+  A+  +  KS FLA +SHEIRTPL AI+G  E++      PL   R   
Sbjct: 217 NTERKLDEARAAADAANQAKSAFLAMMSHEIRTPLNAILGNLELLGRSPLSPLQEER--- 273

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
               +  S   +L I+ND+LD SK+ESG+M L      L   + +  ++ +  A+ K + 
Sbjct: 274 -LGVVTSSSTALLGIINDILDFSKVESGQMTLESISFDLGHVIRQVGAMFEPVAHAKGLE 332

Query: 686 IRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRV 741
                 + + P  L D   ++QIA+N++SNAI FT +G    ++ +      +  +++ V
Sbjct: 333 FDCVIDDALAPHYLGDPTRIRQIAVNLVSNAIKFTATGDVLLEVYLKDDTAEDSPIVIGV 392

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            DTG+GMT  + E     F Q  +S   R  GTGLGL L   + +   G   + S    G
Sbjct: 393 SDTGIGMTLQQQETLFHAFTQADSSIARRYGGTGLGLALCLRLTELMHGTIQVKSELNAG 452

Query: 802 TLIEIIFPL 810
           +   +  P+
Sbjct: 453 STFIVTLPI 461


>gi|162451695|ref|YP_001614062.1| sensory box histidine kinase PhoR [Sorangium cellulosum 'So ce 56']
 gi|161162277|emb|CAN93582.1| sensory box histidine kinase similar to PhoR [Sorangium cellulosum
           'So ce 56']
          Length = 597

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 110/586 (18%), Positives = 217/586 (37%), Gaps = 39/586 (6%)

Query: 237 KNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS 296
               +   +  A +  ++             +         I   + T     G ++ +S
Sbjct: 32  AELSAHTEDDLATRTALVTEIAARSGDLAAEAPALATALSKIAGARVTFIDPQGAVRGDS 91

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKS 356
             + E L   +  +      +  +L     ++        +   + YA            
Sbjct: 92  SVAPEGLGQLDTHATRDEVADARHLGTGRSER----VSKTTRMRMLYAAQRLDRPDGPWV 147

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF- 415
           V        +   L A +          +          A A    + +    +  M   
Sbjct: 148 VRVAFEPVAIYRSLSAARTRVVEGTLLALALAVAAALAGARALSGRLVYLTGVAREMRAD 207

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRIN--KRKMEIEVMQLCSILEATSDGIAIINREGI 473
           +      Q  + +   G   +D+   +   +R++  E  +  ++LE+  +G+ + + +G 
Sbjct: 208 LGRRARMQGHDEIATLGGALDDLAESLEVSRRELGGEGERFGAVLESMREGVLVTDEKGD 267

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT---- 529
           I   N A+S+L G   + + R P  V       S ++  L E+       T E       
Sbjct: 268 ITLVNPALSQLLGIRRDPVGRPPLEVL----RSSSLHELLEEVALARAAATREIEIAPAA 323

Query: 530 --LGSTKEEKLLSLRIIIKKLP----FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
             +      ++L +      LP     ++       D++E ++ +               
Sbjct: 324 PGVAGPPGRRILLVNAAPLALPAQSRGAAGVVAVFFDVTELRRIEG-------------- 369

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
            + +F+A  SHE+RTP+ +I   SE +              ++   I+R+   +  +V+D
Sbjct: 370 LQRNFIANASHELRTPVASIRASSETLLGGALD--DPEAARDFVEVIERNATRLHRLVDD 427

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703
           LLD+S+IE G+  L    + L      A++L++  A E+   ++   A     + AD R+
Sbjct: 428 LLDLSRIEGGERPLSPGTLDLSVQAEAAVALLRGRAMERGTDVKIDVAPGTL-VAADPRA 486

Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
           + QI  N++ NAIH TP+G  +++     +N  V+L V D G G+      +    F ++
Sbjct: 487 LDQILTNLVDNAIHHTPNGSHVVVR-ARAANGRVVLEVEDDGPGIPAVHQARVFDRFYRV 545

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
              +     GTGLGL +AK +V+A  G   + +  A G L  I  P
Sbjct: 546 DPGRSRASGGTGLGLSIAKHLVEAMSGDITVTTGAAGGALFRITLP 591



 Score = 43.5 bits (101), Expect = 0.15,   Method: Composition-based stats.
 Identities = 30/327 (9%), Positives = 67/327 (20%), Gaps = 18/327 (5%)

Query: 71  ENTFVFDPIPRTVRF-TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL---H 126
                F  +  ++R      D  G +  ++  L + +G      +G    +V        
Sbjct: 243 GEGERFGAVLESMREGVLVTDEKGDITLVNPALSQLLGIRRD-PVGRPPLEVLRSSSLHE 301

Query: 127 IDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHV 186
           +     +      +           + G      + + A P+    +         +   
Sbjct: 302 LLEEVALARAAATREIEI-APAAPGVAGPPGRRILLVNAAPLALPAQSRGAAGVVAVFFD 360

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY 246
                    L +      SH             E     +   P         +      
Sbjct: 361 VTELRRIEGLQRNFIANASHELRTPVASIRASSETLLGGALDDPEAARDFVEVIERN--- 417

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
                  L      LL        E+             +     L+  + E    +   
Sbjct: 418 ----ATRLHRLVDDLLDLSRIEGGERPLSPGTLDLSVQAEAAVALLRGRAMERGTDVKID 473

Query: 307 NHPSLSAYFDEGENLTPETVDKCPI-PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365
             P      D       + +            +G+                ++  +   G
Sbjct: 474 VAPGTLVAAD--PRALDQILTNLVDNAIHHTPNGSHVVVRARAAN--GRVVLEVEDDGPG 529

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRT 392
           +  +  A        + P     S  T
Sbjct: 530 IPAVHQARVFDRFYRVDPGRSRASGGT 556


>gi|95929257|ref|ZP_01312001.1| multi-sensor signal transduction histidine kinase [Desulfuromonas
           acetoxidans DSM 684]
 gi|95134755|gb|EAT16410.1| multi-sensor signal transduction histidine kinase [Desulfuromonas
           acetoxidans DSM 684]
          Length = 709

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 85/371 (22%), Positives = 170/371 (45%), Gaps = 24/371 (6%)

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            +  +     ++ +IL+   DGI  +++ G I S N A +K+FGY  E+++ K  +   +
Sbjct: 347 AEEALRSNEKRIHAILDTAPDGIITVDQNGTIESLNLAAAKMFGYDSEELVGKSISKLAQ 406

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEK--ITLGSTKEEKLLSLRIII--KKLPFSSCYSLTM 558
                 +   + +       +  +      G   E + + + +     ++   + +   +
Sbjct: 407 DEHSGRLLQTIKKYPETSHYKCFDSGCEMAGRKIEGEFIPVHMRASSVQIGSDTLFVWIV 466

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            DISE K   ++++H+K++A        +  A ++HEIR PL  I G ++++        
Sbjct: 467 RDISELKAMHDEIAHSKRLA-----AIGEMGASIAHEIRNPLAGIGGAAQMLLK---SVK 518

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
            NPR +   N I      + + VN +LD ++        +   ++  + + E  +  +  
Sbjct: 519 DNPRQVAILNEIIILVFRIENTVNQMLDYARA----WTPNQALITPMQLLKEVATEAETM 574

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738
            N K+I  + S  ++I  I  D   ++Q+  N+  N+    P GG++      T N E+I
Sbjct: 575 ENFKQISFKFSGDDSI-AIPLDEDLIRQVLWNLFKNSAEAMPDGGELSCHVQATQN-ELI 632

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           + ++D G+GM +  ++K   PF         +  GTGLGLP+ + +++A+ G   I S  
Sbjct: 633 VSIQDHGMGMDDETIKKLFTPFFTT------KIYGTGLGLPICQRIIEAHKGSIAIHSAL 686

Query: 799 AKGTLIEIIFP 809
            +GT I + FP
Sbjct: 687 GEGTTISLRFP 697



 Score = 44.6 bits (104), Expect = 0.064,   Method: Composition-based stats.
 Identities = 14/145 (9%), Positives = 34/145 (23%), Gaps = 15/145 (10%)

Query: 310 SLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDD-------IE 361
           +        E      +D  P     V  +G +   N +   +  Y S +        + 
Sbjct: 346 AAEEALRSNEKRIHAILDTAPDGIITVDQNGTIESLNLAAAKMFGYDSEELVGKSISKLA 405

Query: 362 IAGGLSTLLDAPKLSDNNAIK-------PVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
                  LL   K     +          +   + +   I    R  ++Q   +      
Sbjct: 406 QDEHSGRLLQTIKKYPETSHYKCFDSGCEMAGRKIEGEFIPVHMRASSVQIGSDTLFVWI 465

Query: 415 FIPFEKANQFPENMPQNGIEPEDVD 439
                +     + +  +       +
Sbjct: 466 VRDISELKAMHDEIAHSKRLAAIGE 490


>gi|171316802|ref|ZP_02906013.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria MEX-5]
 gi|171098060|gb|EDT42876.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria MEX-5]
          Length = 1004

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 109/668 (16%), Positives = 211/668 (31%), Gaps = 43/668 (6%)

Query: 155 TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214
                 + + A P +S        +        R     +    R+    +   ++   +
Sbjct: 113 RQQQGRVVMQANPSFSPILALGDLQAPPTAGFARYLALAQDFSYRVGAYSTTQGQLLGAY 172

Query: 215 SSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQED 274
                  +   +     P  R  +                   +  + +   +       
Sbjct: 173 FYSPDGGFLTITPVPEQPMARRPDGTIDTRALM-----RAVLNESDMASMMGAEGHAGIA 227

Query: 275 FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF 334
           + +   N+ T +     +Q    +   +L   +   + A   +     P          +
Sbjct: 228 WLSPVENRLTGRNVVRAIQVCYSDGKPFLFVVSEIPVYALQQKLSAKLPG------ERAW 281

Query: 335 VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394
           +   G    A  +            +  A      L   +         ++   +     
Sbjct: 282 IDDAGGRQIA--AAGDEGNAHGDAAVSAANRSWPALKEGRPDLRYQGLRIVFRSALPASG 339

Query: 395 AASARLHTIQWNR-----ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449
                  TI W           A+       A      +            +   +++  
Sbjct: 340 WML--YQTITWQTVLVGIGKQFAVVLTALAVAMATVWFVMLFLNRRILRPGQDRVKRILD 397

Query: 450 EVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
                 +++     G+ ++  + G +L  N             +                
Sbjct: 398 SENLNRAMVATAPTGLVLLELDQGAVLLENDVARAF----AARVSGGT------PPLRER 447

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK--LPFSSCYSLTMHDISEWKQ 566
           ++    +       QT E+     T + +   L +   +              DI+  K+
Sbjct: 448 LHALFRQTAHARPAQT-ERELTVETNDGERSDLLVNAVRAIYLGRDAILCNFVDITARKR 506

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
            +  L+ A + AE  S  KS FLA +SHEIRTPL AI+G  E++         +    + 
Sbjct: 507 LERNLAEASRAAESASRAKSAFLATMSHEIRTPLNAILGSLELLDRTPL----SDAQRKR 562

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
                 SG  +L IVND+LD+SKIE+G+M +      L     +  ++ +  A  + +  
Sbjct: 563 VQTALTSGTSLLGIVNDILDVSKIEAGQMTIEHVSFDLASLARDVAAMFEPVAKSRHLDF 622

Query: 687 RTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS---NEEVILRVR 742
                  + PR + D   ++QI +N++ NAI FT SG ++++            + + V 
Sbjct: 623 CCMVDPALAPRYIGDPTRIRQIMINLVGNAIKFTESG-EVVLEVYLEDADDRNRIAIGVI 681

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D+G+GM+  + +     F Q   S   R  GTGLGL L K + D   G     S P  G+
Sbjct: 682 DSGIGMSPEQQQNLFHAFTQADTSIARRFGGTGLGLALCKQLTDLMHGDIESISEPGVGS 741

Query: 803 LIEIIFPL 810
              +   L
Sbjct: 742 TFIVRLTL 749


>gi|325263352|ref|ZP_08130087.1| sensor histidine kinase/response regulator [Clostridium sp. D5]
 gi|324031745|gb|EGB93025.1| sensor histidine kinase/response regulator [Clostridium sp. D5]
          Length = 1004

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 101/400 (25%), Positives = 180/400 (45%), Gaps = 28/400 (7%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV----------SKLFGYPVE 490
           R  ++    +  +  S +   ++ +  I+      + N             SKL    ++
Sbjct: 473 RKTEKARLNDYERFISYVCRMNELVLEIDLN----TMNSWYYNTINGNVVKSKLSSDQLK 528

Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL--LSLRIIIKKL 548
           ++    +    EQ +P +   YL  ++        E      T E      +++ + +  
Sbjct: 529 ELSGSLWFEDAEQLSPRLQRDYLNTLVDQTSEYYFECRITRDTPEPHWYAFTIQGLARDS 588

Query: 549 PFSSCYSLTMHDISEWKQEKNKLS----HAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
              +   +  HDI   K+E+++       A   A++ S  KS FL+R+SHE+RTPL AII
Sbjct: 589 MHPNSIMILGHDIDMAKKEEDQRRKTLQDALAAAQQASETKSSFLSRMSHEMRTPLNAII 648

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           G+ E+    +       +  +Y    D + + +L I+ND+LD++ IESGK++L      L
Sbjct: 649 GYLEL---GKKNADDTEKLWDYMAKSDIAAHQLLSIINDVLDMASIESGKLHLEKVQFEL 705

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGG 723
            E ++E   + +  A  K++  +    ++    I+ D   + QI +N+LSNA+ FTP+GG
Sbjct: 706 TEEINEIREMFESQAWHKKLDFQVLMDSSEKIYIMGDPLRLNQILINLLSNAVKFTPAGG 765

Query: 724 QIIISTTHT--SNEEV--ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
           ++ +S   T      V     V DTG+GM+   L+    PF Q   S   +  G+GLG+ 
Sbjct: 766 KVTLSVKKTALQEGHVYYCFEVTDTGIGMSEEYLDSLFDPFVQQDASIARKYGGSGLGMS 825

Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819
           + K +V    G   + STP +GT+  +  P        D 
Sbjct: 826 ITKNLVTMKQGTISVKSTPGEGTVFTVNLPFQLIQQVEDI 865


>gi|153869800|ref|ZP_01999325.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
 gi|152073728|gb|EDN70669.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
          Length = 652

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 92/321 (28%), Positives = 148/321 (46%), Gaps = 5/321 (1%)

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
             D L KP       +       ++ +         LE+     T E    +  +  + +
Sbjct: 47  AADYLTKPIETTQLISRIKTYIRFIEQDYQHKQE--LERKVEERTTELLSANKLLTQEII 104

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                      ++ E ++ +  L  AK+ AE  +  KS FLA +SHE+RTPL AIIG+SE
Sbjct: 105 ERKQIEIALTQEVIERQKVQQALKEAKEAAEAANVAKSQFLANMSHELRTPLNAIIGYSE 164

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
           ++  +           +  + I  +GN +L ++ND+LD+SKIE+GKM L  EP+ L+  +
Sbjct: 165 MLAEEAEDLEQEEFIPD-LHKIKTAGNHLLGLINDVLDLSKIEAGKMELLIEPIDLNILM 223

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
            E IS  Q    +K        +  +  I  D+  ++Q+ LN++SNA  FT  G  I ++
Sbjct: 224 DEVISTTQPLIEKKANNFDIKRSQQLGEIQTDITKLRQMLLNLISNAAKFTEKG-TISLN 282

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
               ++  +   V D G+GMT  +  K  +PF Q   S   R  GTGLGL + K   +  
Sbjct: 283 IQSEAD-LIKFCVTDNGIGMTEEQQAKLFQPFTQADASTTRRFGGTGLGLTITKQFAEMM 341

Query: 789 MGKFYIFSTPAKGTLIEIIFP 809
            G   + +   KG+   I  P
Sbjct: 342 GGSISVTTEFGKGSTFSISLP 362


>gi|116747680|ref|YP_844367.1| PAS/PAC sensor hybrid histidine kinase [Syntrophobacter
           fumaroxidans MPOB]
 gi|116696744|gb|ABK15932.1| PAS/PAC sensor hybrid histidine kinase [Syntrophobacter
           fumaroxidans MPOB]
          Length = 836

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 95/645 (14%), Positives = 192/645 (29%), Gaps = 49/645 (7%)

Query: 191 NDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP----PHLRMKNKVSSLTEY 246
            +     +  +  F    E         +  + +                     +  + 
Sbjct: 69  RERVRELESAENPFRTALEDHDELIVRFRPDFTLVYANQAYCRHLADTEAPCVGGNFLDC 128

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
               D     E+   L  +      +             +  +  +     +  EYL   
Sbjct: 129 VNPADHDRVREEIGSLVPDGPVKTVEHGVLLGGREVRLSRWVYRAMIGERTDVIEYLGMS 188

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY--ANPSFLLLTKYKSVDDIEIAG 364
                        N      +K     +     +  Y    P+   LT Y   +      
Sbjct: 189 CVQGERIAHPGPWNEYRFLAEKTGNAAYRLRCDSRTYDHLGPAITRLTGYPLDEF--DVS 246

Query: 365 GLSTLLDAPKLSDNNAIKPVMLY--RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
             S L++  ++     + P  L   R +       A         E    +    F   +
Sbjct: 247 KFSELIEKIEIPGEEDVTPDTLIGFRKEGRTGEYRADYLIRTRLGERK-WVRDHSFPWYD 305

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
           +    +   GI  +  + +  +  ++    +  ++   +   IAI++R G I+  N+   
Sbjct: 306 ESGGLVGSVGILSDVTECKRAEEALQESEERFRNMAGLSPFPIAIVDRNGKIIYLNQRFV 365

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR----QTLEKITLGSTKEEKL 538
            LFGY   DI             P      +  I S        + +        K+   
Sbjct: 366 DLFGYTASDIPTLWDWFNQACPDPGESRTIIERIRSDLQAASKYEVISHEHRVRCKDGSS 425

Query: 539 LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
             +R  +  +     +  T  D++E  + + +   A K+              ++H+   
Sbjct: 426 REIRFRLVSMENGDKFV-TCEDLTEHMKIQEERIKASKL-----ESIGVLAGGIAHDFNN 479

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
            LTAIIG    +     G  G  R  E     +R+     ++   LL  SK         
Sbjct: 480 ILTAIIGNI-SLAKLYGGQGG--RVSEKLTEAERACMRAKNLTQQLLTFSK----GGEPI 532

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718
            + + + + + EA+  V        +       +++  +  D   + Q+  N++ NA   
Sbjct: 533 KKVIDVSDFLHEAVHFV---LTGSNVRSVFFLPDDLWPVQCDEGQMGQVINNLIINAKQA 589

Query: 719 TPSGGQIIISTT------------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
            P GG I IS                    + + V+D G G+    L +   P+      
Sbjct: 590 MPDGGTIEISAENVILNAGDQALPLKPGRYLRIGVKDYGHGIPEEALTRIFDPYFTT--- 646

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
              + +G+GLGL  A +++  + G   + S   +G    I  P+ 
Sbjct: 647 ---KLKGSGLGLATAYSIIKKHEGYIQVESRVGEGAAFHIYLPVA 688



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/280 (7%), Positives = 69/280 (24%), Gaps = 13/280 (4%)

Query: 94  YLKEISEELPKTIGNYAFKMIGMRLCDVSD------ILHIDPNNHIGDLLKRQNTWYGKT 147
               +   + +  G    +    +  ++ +         + P+  IG   + +   Y   
Sbjct: 224 TYDHLGPAITRLTGYPLDEFDVSKFSELIEKIEIPGEEDVTPDTLIGFRKEGRTGEYRAD 283

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
            L           +   + P Y  +    G    GI+             +  +++F ++
Sbjct: 284 YLIRTRL-GERKWVRDHSFPWYDESGGLVG--SVGILSDVTECKRAEEALQESEERFRNM 340

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
             +     ++      I         + +    +S         +    +     T  E 
Sbjct: 341 AGLSPFPIAIVDRNGKIIYLNQRF--VDLFGYTASDIPTLWDWFNQACPDPGESRTIIER 398

Query: 268 SLPEQEDFHTINL--NQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
              + +      +  +++  +   G+ +          +     +     +  +      
Sbjct: 399 IRSDLQAASKYEVISHEHRVRCKDGSSREIRFRLVSMENGDKFVTCEDLTEHMKIQEERI 458

Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365
                    V + G     N     +    S+  +    G
Sbjct: 459 KASKLESIGVLAGGIAHDFNNILTAIIGNISLAKLYGGQG 498


>gi|300214839|gb|ADJ79255.1| Sensor protein [Lactobacillus salivarius CECT 5713]
          Length = 461

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 77/362 (21%), Positives = 155/362 (42%), Gaps = 26/362 (7%)

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
              +  S+LE    GI +I+ +  +  +N      F +   +   + +  ++       +
Sbjct: 119 RKREYLSLLEYIDIGILVIDYKDRLTMSNELGKDFFDFD-NEWKNQDYQNYIYNLDVRKL 177

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT-MHDISEWKQEK 568
              +        +Q      L     +K++    I   +       +  + D++  K+ +
Sbjct: 178 IEQVKLTKEDKKKQI----VLKVDTVQKIVETSAIYIPIDSERYLIMLMLRDLTAQKEVE 233

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
            K              + DF+  +SHEI+TP+TAI GFSE + +            ++  
Sbjct: 234 KK--------------QLDFVGNLSHEIKTPITAITGFSETLLDGALD--DKEVSKQFIE 277

Query: 629 YIDRSGNLVLDIVNDLLDISKI-ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
            I      + ++V+D++ IS++ E G  +L+ E V++ + V + + L      +K + +R
Sbjct: 278 IIHDESTKLSNLVDDMITISRLNEHG--SLNIELVNIFKLVKDTLQLFSHEIEKKGLNVR 335

Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747
                 +  +  D   +K I  N++ NAI +    G+I I   +    E +  + DTG+G
Sbjct: 336 IEIDEEL-SLYCDKLKLKHIITNLIQNAIRYNLENGEIKIKVQNDKKNEWVFVISDTGIG 394

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           +++ + E+  + F ++  S      GTGLGL + +  VDA  G+  + S   +GT   +I
Sbjct: 395 ISDEDKERIFERFYRVDKSHSKTVGGTGLGLAVVRKSVDALSGRIKVKSQINEGTTFYVI 454

Query: 808 FP 809
            P
Sbjct: 455 LP 456


>gi|291523426|emb|CBK81719.1| Signal transduction histidine kinase [Coprococcus catus GD/7]
          Length = 1068

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 89/434 (20%), Positives = 175/434 (40%), Gaps = 36/434 (8%)

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK---MEIEVMQLCSIL 458
            I  + E              +  ++        +  + ++   +   M  +   +  ++
Sbjct: 361 RITLDGEERW---VRNVIIRGEIEDSEYAMIFLRDITEAKVESARHLQMAADNASMEQLI 417

Query: 459 EATS---DGIAIIN-REGIILSTNRAVSKL---FGYPVEDILR-----KPFTVFLEQNTP 506
           ++     D   + +         N     +    G+  +  ++     K        +  
Sbjct: 418 QSIVRLVDRFVVCDLENDRYEFYNLNGQMIYKPLGFYHDFQMQVLEKYKTLEPLEAIDIL 477

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGST--KEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564
              ++   ++ S +     E  +L     K    + L     KL       +   D+++ 
Sbjct: 478 IAPDNIRKKLKSENDIYKFEYCSLDEKTYKIASYIPLEWKNGKLEK---VLMASMDVTQE 534

Query: 565 KQEKNKLSHAKKIAEK----ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           K+ + +   A K A +     +  K++FL+ +SH+IRTP+ AI+G + +           
Sbjct: 535 KKAEIESRQALKEAYRSAENANRAKTEFLSNMSHDIRTPMNAIVGLTAIA---GANVESK 591

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
            R IE    I  S   +L ++N++LD+++IESGKM L  E  +L E V   I+L +   +
Sbjct: 592 DRVIECLGKITESSRHLLGLINEVLDMARIESGKMTLAQEDFNLSELVDNLITLTKPMLD 651

Query: 681 EKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE--- 736
           E +        +     +  D   ++Q+ +N++SNAI +TP GG II S     N     
Sbjct: 652 EHKHNFDIHINHIEHEAVCGDSLRIQQVFVNLMSNAIKYTPDGGNIIFSIEEKPNGFSEL 711

Query: 737 --VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
                 + D G+GM+    +    PF +  + +  R +GTGLG+ +++ +V+   G   +
Sbjct: 712 GCYEFTIEDNGIGMSTEFQKIMFDPFSRADDHRTTRVQGTGLGMAISRNIVNLMNGNIKV 771

Query: 795 FSTPAKGTLIEIIF 808
            ST  KGT I +  
Sbjct: 772 DSTLHKGTRITVTI 785


>gi|262042406|ref|ZP_06015567.1| phosphate regulon sensor protein PhoR [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259040238|gb|EEW41348.1| phosphate regulon sensor protein PhoR [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 431

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 74/427 (17%), Positives = 156/427 (36%), Gaps = 37/427 (8%)

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             +L       I     L  + W     L +         +        G+    +  + 
Sbjct: 33  WFLLAAVTGLLIWHFWNLMRLSW----WLWVDRSMTPPPGRGSWEPLLYGLHQMQMRNKK 88

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            +R++   + +  S  E+  D + +   EG I   N    ++      D   +     L 
Sbjct: 89  RRRELGSLIKRFRSGAESLPDAVVLTTEEGAIFWCNGLAQQILNLRWPDDSGQNILNLLR 148

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
                    +   +   D  + L  +   +        L I +        + +   D++
Sbjct: 149 YP------EFANYLKQRDFSKPLNLVLNNARH------LEIRVMPYSDKQ-WLMVARDVT 195

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  Q +                + +F A VSHE+RTPLT + G+ E+++ Q        +
Sbjct: 196 QMHQLEG--------------ARRNFFANVSHELRTPLTVLQGYLEMMQEQVLEGATREK 241

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                + +      +  +V  LL +S+IE+       + + +   +       Q  + EK
Sbjct: 242 A---LHTMREQTQRMEGLVKQLLTLSRIEAAPALAMNDRIDVPMMLRVVEREAQTLSQEK 298

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           +  +  +    + ++L +   ++    N++ NA++ TP G +I +S   T    +   V 
Sbjct: 299 Q-TLIFTVDEQL-KVLGNEEQLRSAISNLVYNAVNHTPPGTEIRVSWQRTPQGAL-FSVE 355

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G G+    + +  + F ++  ++  +  G+GLGL + K  V+ +  +  I ST  KGT
Sbjct: 356 DNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHAVNHHDSRLEIDSTVGKGT 415

Query: 803 LIEIIFP 809
               + P
Sbjct: 416 RFSFLLP 422


>gi|221210070|ref|ZP_03583051.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
           CGD1]
 gi|221170758|gb|EEE03224.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
           CGD1]
          Length = 688

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 111/537 (20%), Positives = 182/537 (33%), Gaps = 31/537 (5%)

Query: 285 KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYA 344
             +  GT            + R              L         +         +  A
Sbjct: 15  PDRTGGTPPREGCRRECRNAMRTVTRELFRQGAWIVLAVGVACALQVGAI-----RVVGA 69

Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
           +  F  L  Y  V     A  L++L      +  + +    L+  D       A   T  
Sbjct: 70  HAPFAPLPFYAGVAA---AAWLTSLAGGLAATVASTVVIAALWWRDAPTATWLADAGTFV 126

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
                  A+         +            +             E + L  +++A+ D 
Sbjct: 127 AIGVIECALIAAVRPLFART----RAVDDANDARREPAAAPPPPSEDVLLRRVVDASPDA 182

Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
           I  ++    I+S N A  ++FG     ++ +  T              +   +       
Sbjct: 183 IVGVDGARRIVSWNHAAQRIFGADAATMIGRDVTTLFAPRWLR--RQPVPASIDEVHAPV 240

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSCYS-----------LTMHDISEWKQEKNKLSH 573
                L   ++            +  ++ +                D             
Sbjct: 241 GPIDVLCMRQDAHCFRATFAASPIVDANGHVDGLSMTLREARERRRDERRDHLSLRGARD 300

Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
           A+  A+  +  K + LA VSHE+RTPL  I G+ EV+++      G     +  + IDRS
Sbjct: 301 ARAQADTSNRLKDELLATVSHELRTPLNVIYGWVEVLRS----VDGQGFAQQAVDAIDRS 356

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693
              +  +V DLLD S + +GK+ L   PV +   V +A       A+ K I + T  A  
Sbjct: 357 ARSLARMVGDLLDASSLATGKLRLERTPVDVARVVHDAAREFGAPAHAKGITLVTEGAGT 416

Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753
              I AD   + Q+  N+LSNAI FTPSGG+I++S        V L V DTG GM    L
Sbjct: 417 ACVISADAERLHQVLSNLLSNAIKFTPSGGRIVVSLARVD-AHVSLSVADTGQGMAPEAL 475

Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFP 809
                PF +  N+      G GLGL + + + + + G     S  P +G  + +  P
Sbjct: 476 PHLFDPFNRPANAPASPQRGLGLGLSIVRNIAELHGGSVEAASEGPGRGLTVTVTLP 532



 Score = 45.8 bits (107), Expect = 0.027,   Method: Composition-based stats.
 Identities = 41/406 (10%), Positives = 81/406 (19%), Gaps = 31/406 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D    +   +    +  G  A  MIG  +  +     +        + +      G   
Sbjct: 186 VDGARRIVSWNHAAQRIFGADAATMIGRDVTTLFAPRWLRRQPVPASIDEVHAPV-GPID 244

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFR-GFGIVHVNRVDNDPRALGKRLDKKFSHL 207
           +  +           AA PI   N    G           R D     L  R  +     
Sbjct: 245 VLCMRQDAHCFRATFAASPIVDANGHVDGLSMTLREARERRRDERRDHLSLRGARDARAQ 304

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT---------EYYAHKDDVLKTEK 258
            +                 +            + S+          +        L    
Sbjct: 305 ADTSNRLKDELLATVSHELRTPLNVIYGWVEVLRSVDGQGFAQQAVDAIDRSARSLARMV 364

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
             LL +   +  +     T                  +      L      +      + 
Sbjct: 365 GDLLDASSLATGKLRLERTPVDVARVVHDAAREFGAPAHAKGITLVTEGAGTACVISADA 424

Query: 319 ENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEI--AGGLSTLLDAPKL 375
           E L     +       F  S G +  +             D  +      L  L D    
Sbjct: 425 ERLHQVLSNLLSNAIKFTPSGGRIVVSLARVDAHVSLSVADTGQGMAPEALPHLFDPFNR 484

Query: 376 SDNNAIKPVM-----------LYRSDR------TCIAASARLHTIQWNRENSLAMTFIPF 418
             N    P             +           +         T+         M  +P 
Sbjct: 485 PANAPASPQRGLGLGLSIVRNIAELHGGSVEAASEGPGRGLTVTVTLPAGWDADMAVVPL 544

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
              +  P    ++       D   ++  +   +  L + +     G
Sbjct: 545 GAVDSVPAAALEHQRVLVVDDEPTSRASLSAALQTLGAQVSTAQSG 590


>gi|89093729|ref|ZP_01166676.1| sensor histidine kinase with a response regulator receiver domain
           [Oceanospirillum sp. MED92]
 gi|89082125|gb|EAR61350.1| sensor histidine kinase with a response regulator receiver domain
           [Oceanospirillum sp. MED92]
          Length = 1144

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 77/263 (29%), Positives = 139/263 (52%), Gaps = 8/263 (3%)

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            +I   +Q   +L  AK+ AE+ +  KS +L  +SHE+RTPL +I+G+++++  +     
Sbjct: 661 REIDAHEQTDRELQEAKEQAERANEAKSRYLTGISHELRTPLQSILGYAQLLSEKEEVAS 720

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
                      I RSG  + D++  LLDISKIE+G+++L    V+L E + + + + ++ 
Sbjct: 721 D---QKRGLKIIHRSGQYLTDLIEGLLDISKIEAGRLDLFRNQVNLPELIDQMVEMFRVQ 777

Query: 679 ANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737
           A++K +++  +    +P  ++ D + ++QI +N+LSNAI +T  G ++     +  N+  
Sbjct: 778 ADKKSLVLNFTLDGRLPDYVMTDEKRLRQILINLLSNAIKYTDKG-KVDFHIRYR-NQVA 835

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
              VRDTG G+    L++  +PF ++ NS      GTGLGL + K + +   G   + S 
Sbjct: 836 EFVVRDTGPGIEKENLDRVFQPFERVRNSSNAHRPGTGLGLTIVKLLTEIMGGDLQVKSE 895

Query: 798 PAKGTLIEII--FPLYDTSHPHD 818
              G+   +    P  D S   D
Sbjct: 896 IGTGSEFRVSLLLPWLDQSQAED 918


>gi|308274436|emb|CBX31035.1| hypothetical protein N47_E45470 [uncultured Desulfobacterium sp.]
          Length = 501

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 97/481 (20%), Positives = 194/481 (40%), Gaps = 34/481 (7%)

Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR-----LHT 402
           F       ++D ++       LLD      +     + +   +   +             
Sbjct: 35  FTAERGDIALDILDREDISIVLLDLKMPGLDGMQVLMRIRGKNPDILVIVITGYATVETA 94

Query: 403 IQWNRENSLAMTFIP-------FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
           I+  ++ +      P               +       E  +++ +     +  E  ++ 
Sbjct: 95  IEAMKQGAYDFVAKPFEPEHLRIIVNRALEKIRLTFEAEILELERKRTLADLGTEKSRIR 154

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPV-EDILRKPFTVFLEQNTPSVMNHYLT 514
           +I+E+  +GI + N  G +   N A  KL G     D        +++      +   ++
Sbjct: 155 TIIESLPNGIVVTNSTGHVALMNPAFLKLLGLDFYPDSTDGHIEHYVKDEGFCSLVMRIS 214

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLS 572
           +    D           ST ++K L  RI       +      +++ DI+  K       
Sbjct: 215 QCSYDDAGNIPPYEF--STSDDKYLMARIRPVVGDENECLGAVISIEDITALKML----- 267

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
                       KS+F+A+VSHE+R+PL+ I      + N   G   N    +  N    
Sbjct: 268 ---------DRLKSEFVAKVSHELRSPLSTIHEQLASVLNDMAGEDSNGE-RQLLNRAKE 317

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
             + ++ ++ DLLD+S+IE+G +    +PV +   +   +  +      K+  I+ +   
Sbjct: 318 KTSGLISLIGDLLDLSRIEAGMVCNELKPVCVSTLLKNIVDFLSTRTKGKQQSIKLNLPE 377

Query: 693 N-IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751
             +P + +D  +++ I  N+++NAI++T  GG+II+S        +++ V+D G G+   
Sbjct: 378 TTLPSVQSDPLALESIFGNLIANAINYTQEGGEIIVSAFAEEKN-LVVEVKDNGFGIDPK 436

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
            ++K    F +I N +     GTGLGLP+ K +++   G   + STP KG++  + FP+ 
Sbjct: 437 YIDKIFDKFFRIKNEKTRFITGTGLGLPIVKGLLEDIGGSIIVKSTPGKGSVFTVAFPIG 496

Query: 812 D 812
           D
Sbjct: 497 D 497


>gi|291539348|emb|CBL12459.1| Signal transduction histidine kinase [Roseburia intestinalis XB6B4]
          Length = 867

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 72/357 (20%), Positives = 153/357 (42%), Gaps = 30/357 (8%)

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           I++   + + + + +   L  N    K+                + +      +  +   
Sbjct: 159 IIDNLKEAVIVTDADHRFLFLNSMADKI-------------ITSINKEQGYSTDDKIYAF 205

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF-SSCYSLTMHDISEWKQEKNKLSHAK 575
           +                 +++   +   + K       Y +T+ D+++  ++ + +    
Sbjct: 206 IQGSQDFF--------DWKDRHYQVEETVLKDNELIQGYMMTIVDVTKIIEQNHLMKRLV 257

Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
              E  +  K++F++ +SHEIRTP+ +I+G +E++   R  P    +  EY   I  SG 
Sbjct: 258 LQTEDANRAKTNFVSNMSHEIRTPMNSIVGITEILLRSRHSP----KEQEYLLNIQSSGR 313

Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695
           ++L I+ND+LD SK+E+GKM L  EP        +    ++       + +      +IP
Sbjct: 314 VLLTIINDVLDCSKMEAGKMQLFDEPYDTCSLFHDLRISMENRIGHSGLELIYDIDQDIP 373

Query: 696 -RILADLRSVKQIALNILSNAIHFTPSGGQ---IIISTTHTSNEEVILRVRDTGVGMTNY 751
            ++  D+  ++Q+ +N+++NAI +T  G     + +   +T    +   V DTG+G+   
Sbjct: 374 CKLKGDMGRIRQVIINLVNNAIKYTEKGSVRFSVHVRQKNTDKVMLYYEVADTGIGIRKE 433

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           + +     F ++   +    EGTGLGL +++ +V+   G   + S   KG+      
Sbjct: 434 DQKILFDAFQRVEMDRNRYVEGTGLGLTISQNLVNMMGGVIEVESEYGKGSRFFFTI 490


>gi|240145433|ref|ZP_04744034.1| putative sensory box histidine kinase/response regulator [Roseburia
           intestinalis L1-82]
 gi|257202562|gb|EEV00847.1| putative sensory box histidine kinase/response regulator [Roseburia
           intestinalis L1-82]
          Length = 867

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 72/357 (20%), Positives = 153/357 (42%), Gaps = 30/357 (8%)

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           I++   + + + + +   L  N    K+                + +      +  +   
Sbjct: 159 IIDNLKEAVIVTDADHRFLFLNSMADKI-------------ITSINKEQGYSTDDKIYAF 205

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF-SSCYSLTMHDISEWKQEKNKLSHAK 575
           +                 +++   +   + K       Y +T+ D+++  ++ + +    
Sbjct: 206 IQGSQDFF--------DWKDRHYQVEETVLKDNELIQGYMMTIVDVTKIIEQNHLMKRLV 257

Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
              E  +  K++F++ +SHEIRTP+ +I+G +E++   R  P    +  EY   I  SG 
Sbjct: 258 LQTEDANRAKTNFVSNMSHEIRTPMNSIVGITEILLRSRHSP----KEQEYLLNIQSSGR 313

Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695
           ++L I+ND+LD SK+E+GKM L  EP        +    ++       + +      +IP
Sbjct: 314 VLLTIINDVLDCSKMEAGKMQLFDEPYDTCSLFHDLRISMENRIGHSGLELIYDIDQDIP 373

Query: 696 -RILADLRSVKQIALNILSNAIHFTPSGGQ---IIISTTHTSNEEVILRVRDTGVGMTNY 751
            ++  D+  ++Q+ +N+++NAI +T  G     + +   +T    +   V DTG+G+   
Sbjct: 374 CKLKGDMGRIRQVIINLVNNAIKYTEKGSVRFSVHVRQKNTDKVMLYYEVADTGIGIRKE 433

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           + +     F ++   +    EGTGLGL +++ +V+   G   + S   KG+      
Sbjct: 434 DQKILFDAFQRVEMDRNRYVEGTGLGLTISQNLVNMMGGVIEVESEYGKGSRFFFTI 490


>gi|91200023|emb|CAJ73065.1| hypothetical histidine kinase protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 1128

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 90/526 (17%), Positives = 181/526 (34%), Gaps = 53/526 (10%)

Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDD 359
            +  +      +   E E       D+  + F +     GN    N  +  +        
Sbjct: 478 AMESQERKKTESALQESEKRFRVMFDQAAVGFALQEVKTGNYILVNKKYNEIMS------ 531

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRS--DRTCIAASARLHTIQWNRENSLAMTFIP 417
                      +AP +  ++    ++  +   D T       +     N +  + +    
Sbjct: 532 -----------NAPLVHPDDRQAVLVNKQKLIDGTIHEFIMEVWFFHENGDT-VWVNMTV 579

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
                   E         +  + +     +E    ++  +L +T +GI  I+ +GI    
Sbjct: 580 SPFWQTGEEPDFYMITVEDLTERKKAIAALEESNEKIQLLLNSTGEGIYGIDEQGICTFA 639

Query: 478 NRAVSKLFGY-PVEDILRKPFTVFLEQNTPSVMNHYLTEI----LSLDLRQTLEKITLGS 532
           N A  KL GY     ++       +       M + + E                  +  
Sbjct: 640 NTACVKLLGYETPHQLIGNQMHKMIHHTHRDGMPYPIEECNVFQAYQKGESIHVIDDIAW 699

Query: 533 TKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
             +     +      +  ++      +T  DI+  K+ + +L H+KK+            
Sbjct: 700 RADGSFFPVEYRSYPIYKNNKNIGAVVTFQDITARKRMEKELLHSKKM-----QALGTIT 754

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
           + V+HE+   L AI G  +++  Q  G       ++    + +      +IV  L + +K
Sbjct: 755 SGVAHEVNNILAAIDGNIQMLMRQNKG---RKMLLDSLKIVHKYVKDGAEIVRRLNEFTK 811

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLY----ANEKRILIRTSFAN--NIPRILADLRS 703
               + +  + PV L E     +  +       A    I  R +      +  I  +   
Sbjct: 812 --KNEDSPGYVPVDLAELTRHVVRFLSPRWQDMAQGTGIKYRINTDGLKKVRDIKGNPSE 869

Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
           ++++ LNI++NA+   P GG +  +      + V L + DTG GMT   + K   PF   
Sbjct: 870 LREVVLNIITNALDAMPKGGTLCFNI-WEDEDNVNLSISDTGAGMTEEVISKIFDPFFT- 927

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
                 + +GTGLGL +   +V  + G  ++ ST   G++  + FP
Sbjct: 928 -----SKEKGTGLGLSVVYGIVKRHGGVIHVSSTVGMGSVFLLSFP 968



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 55/149 (36%), Gaps = 1/149 (0%)

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
           +E E +     + +++    QL ++ +  +  I I + EG  L  N+   K+F    + I
Sbjct: 313 LEDEIIKRLQAENELQQSQSQLQAVFDNAAACIYIKDIEGKHLFINKQYEKVFHITGDTI 372

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
             K       +     ++    ++L        E+I L        LS++  +       
Sbjct: 373 KGKTVYDIFPREMAEALHKTDQKVLESKTPMEFEEIVLHDDVPHTYLSIKFPLYASNDVP 432

Query: 553 -CYSLTMHDISEWKQEKNKLSHAKKIAEK 580
                   DI++ K+ + +L     + ++
Sbjct: 433 YGVCGISTDITQRKEMEIELKKMNALLKQ 461


>gi|20198952|gb|AAK54091.2|AF362372_1 histidine kinase DhkJ [Dictyostelium discoideum]
          Length = 2062

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 84/270 (31%), Positives = 134/270 (49%), Gaps = 13/270 (4%)

Query: 555  SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
             +    I   K+   K + AK+ AE  S  KSDF+A +SHEIRTP+  IIG +++  +  
Sbjct: 1317 LIINEMIHNLKETPLKNTLAKETAEAASRAKSDFMANMSHEIRTPMNGIIGMTDLTLDTE 1376

Query: 615  FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                      EY + +  S   +L I+ND+LD SKIE+G++ L     SL   + +A+  
Sbjct: 1377 LTA----EQREYLSMVQSSAGSLLTIINDILDFSKIEAGRLELDQAEFSLRAHLYDALKT 1432

Query: 675  VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
            +   A++K I +    A+++P  ++ D   ++QI  N++ NAI FT  G ++ +      
Sbjct: 1433 LSWRAHQKCIELVCDIASDVPDSLIGDPGRLRQIVNNLVGNAIKFTSQG-EVDLVVKVEK 1491

Query: 734  N---EEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
            +    EV+    V DTG+G+   +L    + F Q   S   R  GTGLGL ++  +V+  
Sbjct: 1492 SLSCGEVVLKFSVIDTGIGIPKDKLHLIFEAFSQADGSITRRYGGTGLGLTISTRLVELM 1551

Query: 789  MGKFYIFSTPAKGTLIEII--FPLYDTSHP 816
             GK  + S   KG+  E    FP      P
Sbjct: 1552 KGKLSVVSKSGKGSTFEFTAQFPTSPNQLP 1581


>gi|221065881|ref|ZP_03541986.1| Hpt sensor hybrid histidine kinase [Comamonas testosteroni KF-1]
 gi|220710904|gb|EED66272.1| Hpt sensor hybrid histidine kinase [Comamonas testosteroni KF-1]
          Length = 1085

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 94/412 (22%), Positives = 169/412 (41%), Gaps = 26/412 (6%)

Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL-CSILEATSDG 464
               +L +    F   +        +      ++  +  ++M  E      ++++     
Sbjct: 335 KGHMALLIGAAFFVVLSMLAGLSYTHWYRRRVMEPAVEAQRMIDERDAFNRTLIQTAPVA 394

Query: 465 IAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
           + +I+   G IL +N    +  G   +            Q   S     L  + S+D   
Sbjct: 395 LCVISKASGDILFSNSIALEWLGSESDP----------PQPLQSNAIQILRSLRSVDRPG 444

Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
           +++         E+ LS+     +            DIS   + +  L  A+  A++ S 
Sbjct: 445 SMDN---LHIDNERTLSVSYTPARYMDGDAVLCAFTDISTRVEIERALERARSAADEASE 501

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
            KS FL+ +SHEIRTPL  ++G  E++   R     + +  +Y N I+ S  ++L +++D
Sbjct: 502 AKSTFLSTMSHEIRTPLYGVLGTLELLTATRL----DSQQRQYVNRIEGSSQILLQLISD 557

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLR 702
           +LD+SKIE+G++ L     S  E V +        A +K +L  ++    IP  +  D  
Sbjct: 558 ILDVSKIEAGQLKLERLAFSPRELVQDCTGSYAAMAQQKGLLFFSAVDTGIPDSVFGDPV 617

Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSN--EEVI--LRVRDTGVGMTNYELEKAMK 758
            V+QI  N++SNAI FT  G  +I+           V   + V D+GVG+   E  +   
Sbjct: 618 RVRQILSNLISNAIKFTNVGS-VIVRCLVVDQPPGHVTLQIEVADSGVGIDREEQNRLFT 676

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           PF  +  S+     G GLGL +   + +       + S    G++  I   L
Sbjct: 677 PFYIVDGSR-HVVRGAGLGLSICARLAELMGSSMQVKSEKQVGSVFSIALTL 727


>gi|332560655|ref|ZP_08414973.1| DMSO/TMAO-sensor hybrid histidine kinase [Rhodobacter sphaeroides
           WS8N]
 gi|332274453|gb|EGJ19769.1| DMSO/TMAO-sensor hybrid histidine kinase [Rhodobacter sphaeroides
           WS8N]
          Length = 816

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 104/420 (24%), Positives = 182/420 (43%), Gaps = 30/420 (7%)

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
           + A AR+          L   F    +         + G   +        R +  E  +
Sbjct: 136 VTAEARVPAAMREGWLRLLRGFFDRAEIGICAHWSGELGTL-DHDQLLSVNRALVNEKNK 194

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
             +I E+ ++ + +++  G I + N A ++LF          P +V+             
Sbjct: 195 YLTIFESMNNPVLLVDDGGRIENMNFAAARLFLQDA-----LPGSVYYGPEANLRFADLA 249

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKN 569
              L     +      L    E       I  +++   S       +T HD++E ++   
Sbjct: 250 GFDLEAVKLRGEAGDVLTCIGER---WYSITAQEMLDVSRKFVGIVVTFHDVTEARRA-- 304

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
                ++ AE  +  K+DFLA +SHEIRTP+ +I G +E++K          R   Y + 
Sbjct: 305 -----REQAEALARAKTDFLATMSHEIRTPIHSIGGVTELLKQSELAS----RDRGYVDA 355

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK---RILI 686
           I+RS  ++  IV+D+LD ++IESG + L     S+D+ + +   ++Q     K   RI+I
Sbjct: 356 IERSTEVLASIVSDVLDYARIESGLVELEQVDFSIDQILDDVARMMQPLVRRKPQLRIVI 415

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
             +   ++P +L D   ++QI +N+ SNA+ FTP G  +I +            V DTG 
Sbjct: 416 ERT---DLPPVLGDAGKLRQILINLTSNAVKFTPEGTVVIGAERLAGGHRFRFTVSDTGP 472

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+   +LE+  KP+ Q  +S   R  GTGLGL + + +     G+  + STP  G+   +
Sbjct: 473 GIAAEKLEEIFKPYIQSDSSISRRHGGTGLGLAICRRLAGHLGGRLDVRSTPGFGSRFTL 532


>gi|189467846|ref|ZP_03016631.1| hypothetical protein BACINT_04238 [Bacteroides intestinalis DSM
           17393]
 gi|189436110|gb|EDV05095.1| hypothetical protein BACINT_04238 [Bacteroides intestinalis DSM
           17393]
          Length = 507

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 98/385 (25%), Positives = 168/385 (43%), Gaps = 21/385 (5%)

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE--GIILSTNRAVSKLFG 486
                     ++   +++ E     L SILE       + ++   G+ L  N+  S++ G
Sbjct: 132 RVIAFARNITESETQRQENEKYRYFLESILENLPIATTVKDKNKKGLYLIWNKKASEMIG 191

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
            P E I+    + F      + +     +++   L Q+  K    S  ++  LS    + 
Sbjct: 192 IPAEKIVGHHESEFNHLMPDNFIRETDKQVIETGLPQSYIKHFSNSKGQKYTLSFHKTLV 251

Query: 547 KLPFSSCYSLT--MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
                    +     DI+E  +        K+ AE+ +  KS FLA +SHEIRTPL AI+
Sbjct: 252 SYNKGQERWIVSSALDITELLEA-------KEKAEESNKLKSAFLANMSHEIRTPLNAIV 304

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           GFS ++       +      EY + I+ +  L+L ++ND+LDIS+IE+G +    E + +
Sbjct: 305 GFSSILSEY----IQEEDAKEYVHIIEENNQLLLQLINDILDISRIEAGILEFIEENMDV 360

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724
           + ++ E  ++ +L  + K I I          I      VKQ+  N +SNAI  T +G  
Sbjct: 361 NASLYEIKAIAELKVSPK-IEIHLLPGLETCVIHTVPHRVKQVINNYVSNAIKHTEAG-H 418

Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
           I I         +   VRDTG G+     +   + F ++ + +    +GTGLGL +   +
Sbjct: 419 IDIGYYTPQEGYIRFFVRDTGTGIPTENQKHIFERFVKLDSFK----QGTGLGLSICTII 474

Query: 785 VDANMGKFYIFSTPAKGTLIEIIFP 809
            +   GK  + ST  KG+      P
Sbjct: 475 AEKMNGKLGVNSTLGKGSEFWFEIP 499


>gi|298682345|gb|ADI95406.1| TodS [Pseudomonas putida]
          Length = 978

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 89/374 (23%), Positives = 160/374 (42%), Gaps = 17/374 (4%)

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT---VFLEQNTPS 507
                 I +   + + +++  G +L  N+   +  G  +E+I  KPF     +       
Sbjct: 33  EEHARIIFDGLYEFVGLLDAHGNVLEVNQVALEGAGITLEEIRGKPFWKARWWQISKKTE 92

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM----HDISE 563
                L E  S       +   LG +   +++++   +  +       + +     +I++
Sbjct: 93  ATQKRLVETASSGEFVRCDVEILGKSGGREVIAVDFSLLPICNEEGSIVYLLAEGRNITD 152

Query: 564 WKQEKNKLSHAKKIAEKE-------SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            K+ +  L+   +  E+         + KSDF A+VSHE+RTPL+ I+G  E +     G
Sbjct: 153 KKKAEAMLALKNQELEQSVERIRKLDNAKSDFFAKVSHELRTPLSLILGPLEAVMAAEAG 212

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
                 Y +    I R+   +L  VN LLD++K+++ +M L +   +L +      S  +
Sbjct: 213 RESP--YWKQFEVIQRNAMTLLKQVNTLLDLAKMDARQMGLSYRRANLSQLTRTISSNFE 270

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
             A +K I   T     +     D    ++I LN+LSNA  FTP GG I    + +    
Sbjct: 271 GIAQQKSITFDTKLPVQMVA-EVDCEKYERIILNLLSNAFKFTPDGGLIRCCLSLSRPNY 329

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
            ++ V D+G G+     ++  + F Q+    Q    GTGLGL + K  V+ + G   +  
Sbjct: 330 ALVTVSDSGPGIPPALRKEIFERFHQLSQEGQQATRGTGLGLSIVKEFVELHRGTISVSD 389

Query: 797 TPAKGTLIEIIFPL 810
            P  G L ++  PL
Sbjct: 390 APGGGALFQVKLPL 403



 Score =  257 bits (657), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 74/438 (16%), Positives = 162/438 (36%), Gaps = 32/438 (7%)

Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR---KMEIEV 451
             SA     + +   S+ +      K      +                ++    +    
Sbjct: 553 PFSAHELRARVSNLVSMKVAGDALRKELSDQGDDIAILTHRLIKSRHRLQQSNIALSASE 612

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
            +  ++ E ++ GI + + E  IL+ N A  ++ GY  +D+           +    +  
Sbjct: 613 ARWKAVYENSAAGIVLTDPENRILNANPAFQRITGYGEKDLEGLSMEQLTPSDESPQIKQ 672

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLS----LRIIIKKLPFSSCYSLTMHDISEWKQE 567
            L  +L     +          K    +     + ++ +++  S      + DI+E KQ 
Sbjct: 673 RLANLLQGGGAE-YSVERSYLCKNGSTIWANASVSLMPQRVGESPVILQIIDDITEKKQA 731

Query: 568 KNKLSHAKKIAEKESSH--KSDFLARVSHEIRTPLTAIIGFSE----VIKNQRFGPLGNP 621
           +  L+  ++     S      +F A ++HEI  PL+AI+  +      + N+   P   P
Sbjct: 732 QENLNQLQQQLVYVSRSATMGEFAAYIAHEINQPLSAIMTNANAGTRWLGNE---PSNIP 788

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
              E    I R  +   +I+  +    K    +     +P+ L   V++   +++  +  
Sbjct: 789 EAKEALARIIRDSDRAAEIIRMVRSFLK----RQETVLKPIDLKALVTDTSLILKAPSQN 844

Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG----GQIIISTTHTSNEE- 736
             + +     + +P I  D   ++Q+ +N+  NAI           Q+ +S +     + 
Sbjct: 845 NSVNLDVVADDELPEIWGDGVQIQQLIINLAMNAIEAISQADCETRQLTLSFSGNDTGDA 904

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           +++ V+DTG G++  ++ +    F           EG G+GL +   + + + GK ++  
Sbjct: 905 LVISVKDTGPGISERQMAQLFNAFYTTKK------EGLGMGLAICLTITEVHNGKIWVEC 958

Query: 797 TPAKGTLIEIIFPLYDTS 814
            PA G    +  P    S
Sbjct: 959 PPAGGACFLVSIPARQGS 976



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/150 (8%), Positives = 44/150 (29%), Gaps = 9/150 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH-IDPNNHIGDLLKRQNT-WYGK 146
            D    +   +    +  G     + G+ +  ++           + +LL+     +  +
Sbjct: 629 TDPENRILNANPAFQRITGYGEKDLEGLSMEQLTPSDESPQIKQRLANLLQGGGAEYSVE 688

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
            +     G+ ++    ++ +P               I+ +     + +   + L++    
Sbjct: 689 RSYLCKNGSTIWANASVSLMPQRVGESPV-------ILQIIDDITEKKQAQENLNQLQQQ 741

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRM 236
           L  + +  +  E   Y       P   +  
Sbjct: 742 LVYVSRSATMGEFAAYIAHEINQPLSAIMT 771



 Score = 47.7 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/217 (12%), Positives = 61/217 (28%), Gaps = 11/217 (5%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMR-----LCDVSDILHIDPNNHIGDLLKR 139
           F   +DAHG + E+++   +  G    ++ G          +S          +      
Sbjct: 46  FVGLLDAHGNVLEVNQVALEGAGITLEEIRGKPFWKARWWQISKKTEATQKRLVETA-SS 104

Query: 140 QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199
                    +    G    + +D + LPI +           G            A+   
Sbjct: 105 GEFVRCDVEILGKSGGREVIAVDFSLLPICNEEGSIVYLLAEG--RNITDKKKAEAM--- 159

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
           L  K   L +  +    ++  K D F++ S      +   +  L    A +         
Sbjct: 160 LALKNQELEQSVERIRKLDNAKSDFFAKVSHELRTPLSLILGPLEAVMAAEAGRESPYWK 219

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS 296
                + +++   +  +T+        +  G     +
Sbjct: 220 QFEVIQRNAMTLLKQVNTLLDLAKMDARQMGLSYRRA 256


>gi|307729618|ref|YP_003906842.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1003]
 gi|307584153|gb|ADN57551.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1003]
          Length = 657

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 93/509 (18%), Positives = 172/509 (33%), Gaps = 33/509 (6%)

Query: 328 KCPIPFFVYSHGNLFYAN----PSFLLLTKYKSVDDIEIAGGLST----LLDAPKLSDNN 379
              I       G L  A      +   +    SV+              +LD        
Sbjct: 10  AASILVVDDDEGILRLARKSLERAGCRVAVCASVEAARARLAAGGLDLLVLDYQLSGPET 69

Query: 380 AIKPVMLYRSDRTCIA------ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
            +      R++   I        +     I+  R     +     +  +  PE + +   
Sbjct: 70  GLDFFRRLRAEGVRIPAILVTGFTDESRVIEALRAGVSDVVPKSGDYLDYLPEAVERVLS 129

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
           +            +        ++ EA    +   N  G     ++      G       
Sbjct: 130 QVRLQRASDEALLLRDREQHYRNLSEALPHLVLTCNAAGDCDFLSKQWYDYTGLAENSSH 189

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553
              +   +  +    +     + ++     T          + +       +     +  
Sbjct: 190 GLAWLDAVHPDDRDEVRRSWLKAVA-GHAGTYRHELRIRRHDGEYRWFDARMVATRDNEG 248

Query: 554 ----YSLTMHDIS-------EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
               +  +  DI        E ++       A++IAE+ +  K  FLA +SHE+RTPLT 
Sbjct: 249 NVSKWFGSCTDIHSEREAMQERERLLASEQAARQIAEEANRAKDRFLAMLSHELRTPLTP 308

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           ++  + V+      P    +       I R+  L   +++DLLD++++ +GK+ L  E V
Sbjct: 309 VLAGASVL---DMIPDLPDQARASVRMIRRNVELEARLIDDLLDLTRVANGKLRLSLETV 365

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
            + E +   + L +     K+  +          +LAD   ++Q+  N++ NA  FTP G
Sbjct: 366 DVHEVIDSVLELFRSEIQVKQQDVHVYKEATHHYVLADRARLQQMLWNLIRNAAKFTPDG 425

Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
           G I + T       V + V DTG+G+   ++ K    F Q       +  G GLGL + K
Sbjct: 426 GHIYVRTR-DERMHVQISVEDTGIGIEPDQIGKLFNAFEQGDQKMTRQFGGLGLGLAITK 484

Query: 783 AMVDANMGKFYIFSTPAK--GTLIEIIFP 809
           A+ D + G     S P    G    I  P
Sbjct: 485 ALTDVHGGTVTAQS-PGAHCGATFTITLP 512



 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/223 (9%), Positives = 53/223 (23%), Gaps = 8/223 (3%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNTWYGKT 147
           +A G    +S++     G       G+   D       D      +  +     T+  + 
Sbjct: 165 NAAGDCDFLSKQWYDYTGLAENSSHGLAWLDAVHPDDRDEVRRSWLKAVAGHAGTYRHEL 224

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
            +   +G   Y   D   +         S  + FG       + +     +RL       
Sbjct: 225 RIRRHDGE--YRWFDARMVATRDNEGNVS--KWFGSCTDIHSEREAMQERERLLASEQAA 280

Query: 208 HEIKKGHSSVEKE--KYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
            +I +  +  +           ++P   +     V  +      +           +  E
Sbjct: 281 RQIAEEANRAKDRFLAMLSHELRTPLTPVLAGASVLDMIPDLPDQARASVRMIRRNVELE 340

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
              + +  D   +   +         +        E       
Sbjct: 341 ARLIDDLLDLTRVANGKLRLSLETVDVHEVIDSVLELFRSEIQ 383


>gi|225388358|ref|ZP_03758082.1| hypothetical protein CLOSTASPAR_02094 [Clostridium asparagiforme
           DSM 15981]
 gi|225045581|gb|EEG55827.1| hypothetical protein CLOSTASPAR_02094 [Clostridium asparagiforme
           DSM 15981]
          Length = 972

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 113/760 (14%), Positives = 247/760 (32%), Gaps = 76/760 (10%)

Query: 95  LKEISEELPKTIGNYAF-KMIGMRLCDVSDILHIDP----NNHIGDLLKRQNTWYGKTTL 149
              ++ ++ + +G     + I      +++ +H D     +  +   L+    +  +  +
Sbjct: 174 FYFVNRQMLRYLGYETEAEFIDDIDGMITNCMHPDDRGMVDQEVAGQLEAAGEYMVEYRM 233

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL-DKKFSHLH 208
              +G+  ++ +      + + +          +          +     L +     + 
Sbjct: 234 KKKDGS--FIWVHDVGKRMTAEDGR---AAITSVCIDITAQKRAQEEVLNLYNNIPGAVF 288

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
             +        +  D   +             + +       D  +  +      +  ++
Sbjct: 289 RCRFDAGFSVIDANDGLFEFLGYSREEFAALGNRMASVIYPDDLKVLVDTLNRQLATGNT 348

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV-- 326
           +  +      +             +  S ESF Y    +             L  + +  
Sbjct: 349 IHTENRLIRKDGTVRWVSVKAQLFRELSGESFFYCVFVDITDEKLLQKRERELYEQELSY 408

Query: 327 --DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA---- 380
             +         + G L             + V    +       ++    S  +     
Sbjct: 409 FAELSSAG--GSTQGRLNLTRNQVESYMATEDVAIASVGNSYDQTIENLAASAVDPVCGE 466

Query: 381 ------IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
                  +  +L                 +     +   +       N    ++      
Sbjct: 467 KIRTNLNREKVLADYAAGKADFHMDFLR-RRKGGGAFWGSTSFRLCVNPENNDIITFFYT 525

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN--RAVSKLFGYP---- 488
            +  + ++ ++ +                 IA ++ + +I   N    V +L  Y     
Sbjct: 526 FDITEQKLREQLLMQ---------------IAALDYD-VITEINIPAGVHRLISYDEQIK 569

Query: 489 ----VEDILRKPFTVFL-EQNTPSVMNHYLTEI--------LSLDLRQTLEKITLGSTKE 535
                + + +K                 YL  +        L      T       ++  
Sbjct: 570 DTIMRDGVFQKEIRRIADRFMDGPAKREYLAHLDFEYMQKQLEHQPSYTFSVEMRDNSGS 629

Query: 536 EKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK----LSHAKKIAEKESSHKSDFLAR 591
            ++  +++            +   D+++  +++ +    L+ A   AE+ ++ KSDFL+R
Sbjct: 630 LRVKRIQVFYIS-RELKRVCMARTDVTDVVRQEQRQKEELAAALVAAEQANAAKSDFLSR 688

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           +SHEIRTP+ AIIG S +          + +  +  + I  S   +L ++ND+LD+S+IE
Sbjct: 689 MSHEIRTPMNAIIGMSTIAAQHIG---DDEQVADCISKIGISSRFLLSLINDILDMSRIE 745

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALN 710
           SGKM L  E +  +E ++   S+    A  K +         +      D   ++Q+ +N
Sbjct: 746 SGKMLLKNEKIPTEEFLNGINSICYAQAASKGVDYECIADPVLDDYYVGDAMKLQQVLIN 805

Query: 711 ILSNAIHFTPSGGQIIISTTHTS----NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
           ILSNAI FT  GG++  S +       +  +   V DTGVGM+   +    +PF Q    
Sbjct: 806 ILSNAIKFTSEGGKVTFSASQRKKTKNDAVLRFIVNDTGVGMSEEFIPHIFEPFSQESTG 865

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
                 GTGLGL ++K +VD   G+  + S    GT   +
Sbjct: 866 TTAVYGGTGLGLAISKNIVDMMDGRITVRSIKGIGTEFTV 905



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/381 (7%), Positives = 88/381 (23%), Gaps = 24/381 (6%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFK--MIGMRLCDVSDILHIDP-NNHIGDLLKRQN 141
           F    DA   + + ++ L + +G    +   +G R+  V     +    + +   L   N
Sbjct: 288 FRCRFDAGFSVIDANDGLFEFLGYSREEFAALGNRMASVIYPDDLKVLVDTLNRQLATGN 347

Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
           T + +  L   +GT     + + A      + E   +  F  +   ++           +
Sbjct: 348 TIHTENRLIRKDGT--VRWVSVKAQLFRELSGESFFYCVFVDITDEKLLQKRERELYEQE 405

Query: 202 ---------------KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY 246
                           + +      + + + E                 +          
Sbjct: 406 LSYFAELSSAGGSTQGRLNLTRNQVESYMATEDVAIASVGNSYDQTIENLAASAVDPVCG 465

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
              + ++ + +      + ++               +     F    N          + 
Sbjct: 466 EKIRTNLNREKVLADYAAGKADFHMDFLRRRKGGGAFWGSTSFRLCVNPENNDIITFFYT 525

Query: 307 NHPSLSAYFDEGENLTPET-VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365
              +     ++          D             L   +           V   EI   
Sbjct: 526 FDITEQKLREQLLMQIAALDYDVITEINIPAGVHRLISYDEQIKDTIMRDGVFQKEIRRI 585

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
               +D P   +  A       +         +   +++    +  ++     +      
Sbjct: 586 ADRFMDGPAKREYLAHLDFEYMQKQLEHQP--SYTFSVEMRDNSG-SLRVKRIQVFYISR 642

Query: 426 ENMPQNGIEPEDVDTRINKRK 446
           E         +  D    +++
Sbjct: 643 ELKRVCMARTDVTDVVRQEQR 663


>gi|109898976|ref|YP_662231.1| GAF sensor hybrid histidine kinase [Pseudoalteromonas atlantica
           T6c]
 gi|109701257|gb|ABG41177.1| GAF sensor hybrid histidine kinase [Pseudoalteromonas atlantica
           T6c]
          Length = 662

 Score =  292 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 88/382 (23%), Positives = 158/382 (41%), Gaps = 23/382 (6%)

Query: 441 RINKRKMEIEVMQLCS----ILEATSD----GIAIINR-EGIILSTNRAVSKLFGYPVED 491
           R  K  +  E  +L +    ILE        G   ++  +G  L  +  +  +     + 
Sbjct: 134 RHEKLALLKEQQKLMARQQDILEQMGQVAGVGAWELDLVDGK-LYWSSVMKDIHEVDQDF 192

Query: 492 ILRKP--FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
           +         + E    + +   +  ++      + E   +      K  +++   +   
Sbjct: 193 VPDLVNGLNFYKEGENQTRITQCVRRLMDHGGNFSGEFEIVTQKGTPKWAAVKGKAELDG 252

Query: 550 FS-SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                      DI+E    + +L H  K        +S FLA +SHEIRTP+  ++G  +
Sbjct: 253 GKCVRLVGAFQDITEQVNSREQLEHRHKELSLALEARSLFLANMSHEIRTPINGVLGMLQ 312

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
           ++         +     +      S   +L I+ND+LD +KI+SGK+ L   P+ L++ +
Sbjct: 313 IL----DASSLDNEQRRFLGLAKDSATSLLGIINDILDFTKIDSGKLALETVPIDLNQVL 368

Query: 669 SEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIII 727
           +  + +   +A EK I +     N     I+ D   ++QI  N+LSNA+ FT  G Q+ I
Sbjct: 369 NNCVDIFNPHAKEKSIQLVKQLENTQGASIITDPTRLRQICANLLSNALKFTHQG-QVNI 427

Query: 728 STTHT----SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
           +T  T        + + V+D+GVGMT  +      PF Q   S   +  GTGLGL + + 
Sbjct: 428 ATELTLLKKGKATLTIFVKDSGVGMTQEQQALLFSPFSQADVSTTRKFGGTGLGLSITRK 487

Query: 784 MVDANMGKFYIFSTPAKGTLIE 805
           +     G   + S   KG++  
Sbjct: 488 LCQLMSGDVSVKSVLNKGSVFS 509


>gi|224539382|ref|ZP_03679921.1| hypothetical protein BACCELL_04287 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519002|gb|EEF88107.1| hypothetical protein BACCELL_04287 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 817

 Score =  292 bits (748), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 117/643 (18%), Positives = 216/643 (33%), Gaps = 29/643 (4%)

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244
                 +  +   +R +++   + +       V       F        +   ++ +   
Sbjct: 40  RDITERSQRKLELERRNRELYEIQKAAFIGRWVFDTVTREFGYAGHTGIMCKTDEQAIPL 99

Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
           + Y +         +     +      +       L             +  ++    +S
Sbjct: 100 DAYLNLILPEDRNTFENWLGDNLKGNMENTVDYRILYNKDVHYIRLKTFSRERDKDGNIS 159

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCP----IPFFVYSHGNLFYANPSFLLLTKYKSVDDI 360
              +        +  N                F     G L +AN  F L  +  S DDI
Sbjct: 160 LEGYIQNITDIQKSRNDINLLTHAINNSTEDIFAAKEDGTLIFANRLFKLHHELGSTDDI 219

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
                                + ++    +     +    + +    E         +  
Sbjct: 220 SQLKIYE---IGSYTRTLEGWQKMIASIKEGEKHQSFMVYNPLPRFPEILAYEGNAYWVT 276

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII--LSTN 478
           +++    +   G   +      ++++++     L   +E    GI + +       L  N
Sbjct: 277 SDEGVGTIWAFG--RDISQRIRHEQQIKWFNQILDKTMEHLPAGIVVKDIRNNFKYLYRN 334

Query: 479 R-AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
           R + ++    P+E+ L K    F              +I +                   
Sbjct: 335 RESYNR--DVPMEEALGKDDFDFYPLEIAREKRRQDKDIATTGQEMHWIAEERDGHGNPL 392

Query: 538 LLSLRIIIKKLPFSSCYSLTMH-DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
            L  R +  +    S   L +  DI+E +  K +L  AK+ AE     KS FLA +SHEI
Sbjct: 393 FLDKRKMKIESKDFSPILLNIEWDITEMELMKRELMVAKEKAETSDQLKSAFLANMSHEI 452

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTPL AI+GFS +I              EY N ++ +   +L ++N++LD+SKIE+G + 
Sbjct: 453 RTPLNAIVGFSRIIAE----SENTEERKEYYNIVEANNERLLQLINEILDLSKIEAGIVE 508

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716
                V L     E             + +R   ++    I +D   + Q+  N++ NA 
Sbjct: 509 FSIAAVRLHPLCKEIHDAHVFRCPS-DVELRFDPSDEDILIDSDKNRIFQVISNLIGNAF 567

Query: 717 HFTPSGGQIIISTTHTSNEE-VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
            FT  G    IS  +    E ++  V DTG G+   ++ K  + F +  N      +GTG
Sbjct: 568 KFTTKGS---ISYGYHREGETIVFHVTDTGTGIAPEKIGKVFERFVKANNF----AQGTG 620

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
           LGL + K +++   GK  + S   KGT      P   T+   D
Sbjct: 621 LGLAICKTIIERLGGKISVTSELEKGTTFIFTLP-AKTTQDED 662


>gi|312885917|ref|ZP_07745549.1| histidine kinase [Mucilaginibacter paludis DSM 18603]
 gi|311301724|gb|EFQ78761.1| histidine kinase [Mucilaginibacter paludis DSM 18603]
          Length = 1437

 Score =  292 bits (748), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 78/251 (31%), Positives = 130/251 (51%), Gaps = 9/251 (3%)

Query: 563  EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
            E  ++K +   A+  AEK +  KS FLA +SHEIRTP+  +IG + ++         N  
Sbjct: 902  ELNKQKIQEQAARLEAEKANQAKSVFLATMSHEIRTPMNGVIGMASLLVETDL----NTE 957

Query: 623  YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
              EYA  I   G+ +++++ND+LD SKIESGKM++      L  ++ E + L       +
Sbjct: 958  QREYAETIITCGDSLVNVINDILDFSKIESGKMDIEHIDFDLRHSIEEVMDLFGPRVALR 1017

Query: 683  RILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNE---EV 737
             I +      N+P +I+ D   +KQ+ +N+++NAI FT  G   + IS     +    ++
Sbjct: 1018 GIDLIYEIDYNVPRQIIGDSLRLKQVLINLINNAIKFTEKGEVFVKISLLKQDDHGGIDL 1077

Query: 738  ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
               V DTG+G+   +L    KPF Q+ +S   +  GTGLGL +++ +V     + +  S 
Sbjct: 1078 AFTVTDTGIGIPEEKLSNLFKPFSQVDSSTTRKYGGTGLGLVISERLVKLMGDEIWAESN 1137

Query: 798  PAKGTLIEIIF 808
              KG++     
Sbjct: 1138 FGKGSVFSFSI 1148


>gi|254255395|ref|ZP_04948711.1| Response regulator receiver [Burkholderia dolosa AUO158]
 gi|124901132|gb|EAY71882.1| Response regulator receiver [Burkholderia dolosa AUO158]
          Length = 739

 Score =  292 bits (748), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 105/601 (17%), Positives = 199/601 (33%), Gaps = 40/601 (6%)

Query: 229 SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288
              P     +      E  A     +       L +  S++          L        
Sbjct: 4   PAEPASMRADHFVQFYESDAQLVPEIGAFAADALRNGGSAIVIARADRLAELRAQLDALA 63

Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSF 348
                      F   +                   +++   PI       G   +A    
Sbjct: 64  VSIDDTARGRIFVAGAEAMLDRFMDGDTPDPVRFEQSIG--PIVEAAIRAGRPVHAFGEM 121

Query: 349 LLLTKYKSV--DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
           + +   +++    + +    + L+D  + S                     A     Q +
Sbjct: 122 VAILCARNLHDAALRLEALWNRLIDVHRFSLY-------------CGYPHDAFPSAEQSD 168

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV---MQLCS--ILEAT 461
               +         A     +  +  +       R      EI      +L    +L  T
Sbjct: 169 MFRHVCALHRRVLPAASLRNDERELHLTLALSQQRSRALGDEIRRRKDAELQRNGVLMHT 228

Query: 462 SDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520
              IA++   E  I+  N   S L G    DI+ +P    L       +   L +  +  
Sbjct: 229 PLPIALLAGPEHRIVLANHRFSALCG--RTDIVDRPLASVLPGGDTPAIARALDDARTSG 286

Query: 521 LRQTLEKITLGSTKEE-KLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN-------KLS 572
              T+ +    ++ +  ++  L    +         ++  +++E    +        +  
Sbjct: 287 RSTTIGEHRDRASGDGARVYRLHFNPQPQADGFGVIVSAVEVTEHVAAREKLVAANAERD 346

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
                  + +  K  FLA + HE+R PLT I    E+I+N+      N         I R
Sbjct: 347 RLLDELREANHAKDQFLAVLGHELRNPLTPISLALELIRNRDGHATPNE-----LAIIQR 401

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
             + ++ +++DLLD+S+I  GK+ L  E V L + V  A+ +      ++R  +    A 
Sbjct: 402 QLDHMVRLIDDLLDVSRITRGKIELKKEVVRLADIVDRAVEVASPLLEQRRHRLHVDAAL 461

Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752
           ++     D   + Q+  N+L+NA  +TP GG+I +       ++V++ VRD G G+    
Sbjct: 462 DL-HCHGDPVRLSQVVANLLTNAAKYTPPGGEIALRVARGDTDDVLVEVRDNGAGIPRDR 520

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFPLY 811
           L+   +PF +I         G G+GL L ++ V  + G     S     G+   I  P Y
Sbjct: 521 LDSIFEPFFRIDGGSSHMHGGLGIGLALVRSFVRLHGGTVRADSEGLGSGSTFTIALPAY 580

Query: 812 D 812
            
Sbjct: 581 R 581



 Score = 46.6 bits (109), Expect = 0.020,   Method: Composition-based stats.
 Identities = 28/277 (10%), Positives = 65/277 (23%), Gaps = 12/277 (4%)

Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA 248
              DP    + +           +   +  +    + ++      LR++   + L + + 
Sbjct: 90  DTPDPVRFEQSIGPIVEAAIRAGRPVHAFGEMVAILCARNLHDAALRLEALWNRLIDVHR 149

Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
                           +          H   L   + +     L   +    +  S    
Sbjct: 150 FSLYCGYPHDAFPSAEQSDMFRHVCALHRRVLPAASLRNDERELH-LTLALSQQRSRALG 208

Query: 309 PSLSAYFDEGENLTPETVDK-CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
             +    D         +    PI         +  AN  F  L     + D  +A  L 
Sbjct: 209 DEIRRRKDAELQRNGVLMHTPLPIALLAGPEHRIVLANHRFSALCGRTDIVDRPLASVL- 267

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
                P        + +   R+                +      + F P  +A+ F   
Sbjct: 268 -----PGGDTPAIARALDDARTSGRSTTIGEHRDRASGDGARVYRLHFNPQPQADGFG-- 320

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
                   E  +    + K+     +   +L+   + 
Sbjct: 321 --VIVSAVEVTEHVAAREKLVAANAERDRLLDELREA 355



 Score = 40.0 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 26/246 (10%), Positives = 56/246 (22%), Gaps = 14/246 (5%)

Query: 82  TVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN 141
            +           +   +       G     ++   L  V           I   L    
Sbjct: 229 PLPIALLAGPEHRIVLANHRFSALCGRT--DIVDRPLASVLPGGD---TPAIARALDDAR 283

Query: 142 TWYGKTT----LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG 197
           T    TT         G    V   L   P    +          +           A  
Sbjct: 284 TSGRSTTIGEHRDRASGDGARVY-RLHFNPQPQADGFGVIVSAVEVTEHVAAREKLVAAN 342

Query: 198 KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257
              D+    L E    H+  +         ++P   + +  ++    + +A  +++   +
Sbjct: 343 AERDRLLDELREA--NHAKDQFLAVLGHELRNPLTPISLALELIRNRDGHATPNELAIIQ 400

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
           +   L      + +  D   I   +   K+    L +    + E  S            +
Sbjct: 401 RQ--LDHMVRLIDDLLDVSRITRGKIELKKEVVRLADIVDRAVEVASPLLEQRRHRLHVD 458

Query: 318 GENLTP 323
                 
Sbjct: 459 AALDLH 464


>gi|37524900|ref|NP_928244.1| sensor protein BarA [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|36784326|emb|CAE13203.1| Sensor protein BarA [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 775

 Score =  292 bits (748), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 77/243 (31%), Positives = 124/243 (51%), Gaps = 8/243 (3%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L+ AKK A+  +  K++FLA +SHE+RTPL  +IGF+              +  EY   
Sbjct: 277 ELAIAKKRAQDAARIKTEFLANMSHELRTPLNGVIGFTRQTLKTPLTI----QQTEYLYI 332

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I+RS N +L+I+ND+LD S++E+ K+ L   P  L + + E + L+ L A  K I +   
Sbjct: 333 IERSANHLLNIINDILDFSRLEADKLVLENVPFLLQDTIDEVMVLLTLSAKSKNIQLTHH 392

Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEV--ILRVRDTG 745
               IP  ++ D   ++QI  NI+ NAI FT  G  +I I+     + ++   + V DTG
Sbjct: 393 VDPQIPNLVVGDPTRLQQIFTNIIGNAIKFTDQGSVEIKINLLQQKHHKINLEITVSDTG 452

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G++  +     + F Q   S      GTGLGL + + ++    G     S P KG++  
Sbjct: 453 IGISPEQQPHLFQAFHQANASISRHYGGTGLGLVITRKLIQEMGGNISFTSEPKKGSVFR 512

Query: 806 IIF 808
              
Sbjct: 513 FDL 515


>gi|307153463|ref|YP_003888847.1| ATP-binding region ATPase domain-containing protein [Cyanothece sp.
            PCC 7822]
 gi|306983691|gb|ADN15572.1| ATP-binding region ATPase domain protein [Cyanothece sp. PCC 7822]
          Length = 2003

 Score =  292 bits (748), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 76/247 (30%), Positives = 136/247 (55%), Gaps = 7/247 (2%)

Query: 563  EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
            + +QE  +   A++IAE  +  KS+FLA +SHE+RTPL  I+G++++ K  +     N +
Sbjct: 1527 QLEQEVRERQRAEEIAEAANRAKSEFLANMSHELRTPLNGILGYAQICKKDKN---LNEQ 1583

Query: 623  YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                   I + G  +L ++ND+LDISKIE+ KM L        + +   + + Q+ A +K
Sbjct: 1584 QKNRIEIIHQCGEHLLTLINDILDISKIEARKMELCPTDFYFGDFLRGILEICQIKAEQK 1643

Query: 683  RILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
             I +     +++P+I+  D + ++QI +N+L+NA+ FT  G  I    ++    +V  +V
Sbjct: 1644 GISLIFQPLSSLPKIVQVDEKRLRQILINLLNNAVKFTEKGS-ITFKVSYQ-KGKVNFQV 1701

Query: 742  RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
             DTG+G+   +LE+   PF Q+      + EGTGLGL +++ +     G   + S+  KG
Sbjct: 1702 EDTGIGIAPNQLEEIFLPFQQV-GEYSRKTEGTGLGLSISRQLAQMMGGTITVKSSLGKG 1760

Query: 802  TLIEIIF 808
            ++  +  
Sbjct: 1761 SIFSLDL 1767


>gi|17227924|ref|NP_484472.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120]
 gi|17129773|dbj|BAB72386.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120]
          Length = 637

 Score =  292 bits (748), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 81/485 (16%), Positives = 181/485 (37%), Gaps = 28/485 (5%)

Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIA-GGLSTLLDAPKLSDNNAIKPVMLYRSDR 391
             +   G++   N  F  + K      +           +          + +    S  
Sbjct: 170 VAINFEGDILNYNQKFAEMWKLPQQLILSKKCPRCKAFFEGQMKDPETFNRLIWAVSSTS 229

Query: 392 TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV 451
              +       ++       A    P     +    + +     +  +++  +  + +  
Sbjct: 230 NIESYDV----LELKDGRVFAHYSQPQWLGQK---IIGRVWSIWDITESKQTEEALRLNE 282

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMN 510
            +  ++ E +     ++ ++      N AV  L GY   ++L        ++      + 
Sbjct: 283 ARFRALAETSDASTFLV-QDTQFCYVNPAVEVLTGYTRTELLNGFDIRRLIKYRKGRQIR 341

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY------SLTMHDISEW 564
           +      S        +     TK      L   +  L  +  +       +T  DI+++
Sbjct: 342 N------SATATNFEYQEISILTKNGAERWLSCAVTILDSTIDFQGKSVEMITAIDITDY 395

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           KQ +++L+ A + A+     ++ FL+ V H+ R PL  I+ FS  +  +           
Sbjct: 396 KQAESELTQALEQAKHLGELRASFLSMVCHQFRNPLN-IVSFSNSLLKRYLNAQTEETIQ 454

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
              + +  S   +  +++D+L  +K E+ K+        + E  ++ IS +Q+      I
Sbjct: 455 PLLDQVQLSIQQLNQMLDDMLLFAKTEAAKLKFEPSRFEIVEFCNDVISQMQMAHFPNYI 514

Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744
              +        +  D   +  I  N++ NAI ++P G  + +     +NE++I +V+D 
Sbjct: 515 NFISQ--TEYLTVWMDKNILDSILKNLIDNAIKYSPLGSMVELRL-LGNNEKIIFQVKDD 571

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G++  + ++  +PF +  N       GTGLGL + K +VD + G+  + S    GT  
Sbjct: 572 GIGISTLDQKRLFEPFYRGKNVDN--IPGTGLGLSIVKTLVDLHGGQVAVESKVGVGTTF 629

Query: 805 EIIFP 809
            ++ P
Sbjct: 630 TVVLP 634



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 42/286 (14%), Positives = 89/286 (31%), Gaps = 42/286 (14%)

Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIE-IAGGLSTLLDAPKLSDNNAIKPVML----Y 387
           F +  +    Y N +   +T+Y     +      +          +              
Sbjct: 24  FCLGDNWQFLYVNDATCRMTEYSREQLLSMNLQDIDVDFALHDWEEIRQKNNYTFKTRYR 83

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
                       L  ++        +         +    + +  ++    + R    K+
Sbjct: 84  SQSGRIFLVEMSLTFLEDQERRFSCVFVR------EKSNEIVELSVQKWINELRDANNKL 137

Query: 448 EIEVMQLC--------------SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
           + EV +L               S LE+T+ GI  IN EG IL+ N+  ++++  P + IL
Sbjct: 138 QQEVSELKKKEVNLESSLSLLSSTLESTAIGIVAINFEGDILNYNQKFAEMWKLPQQLIL 197

Query: 494 RKPFTVFLE-----QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            K               P   N  +  + S    ++ +   +   K+ ++ +     + L
Sbjct: 198 SKKCPRCKAFFEGQMKDPETFNRLIWAVSSTSNIESYD---VLELKDGRVFAHYSQPQWL 254

Query: 549 PFS-SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
                    ++ DI+E KQ +  L        + +  +   LA  S
Sbjct: 255 GQKIIGRVWSIWDITESKQTEEAL--------RLNEARFRALAETS 292



 Score = 43.9 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 11/148 (7%), Positives = 42/148 (28%), Gaps = 10/148 (6%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
           + ++E +      ++    +    +      L  N A  ++  Y  E +L          
Sbjct: 4   QSELEFKFAHY--LINNAVEASFCLGDNWQFLYVNDATCRMTEYSREQLLSMNLQDI--- 58

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF-SSCYSLTMHDIS 562
                ++  L +   +  +      T   ++  ++  + + +  L      +S       
Sbjct: 59  ----DVDFALHDWEEIRQKNNYTFKTRYRSQSGRIFLVEMSLTFLEDQERRFSCVFVREK 114

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLA 590
             +  +  +          ++     ++
Sbjct: 115 SNEIVELSVQKWINELRDANNKLQQEVS 142


>gi|190890965|ref|YP_001977507.1| two-component sensor histidine kinase [Rhizobium etli CIAT 652]
 gi|190696244|gb|ACE90329.1| probable two-component sensor histidine kinase protein [Rhizobium
           etli CIAT 652]
          Length = 513

 Score =  292 bits (748), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 109/446 (24%), Positives = 187/446 (41%), Gaps = 11/446 (2%)

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
           L      +    + + + R      +A+     +  +   S A+                
Sbjct: 23  LSRTGGGEAVRQRELAILRRLVLLSSAALVAAPVGLSAVTSPAVALPAGVAMVCAAFLFS 82

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
             G               +       S+   T   +  ++  G + +      + F   +
Sbjct: 83  AVGSIALARQGSSAGIATQSAEDFFLSV---TPGLVLFLDPHGSVATVGGRDRRDFLAWM 139

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS---TKEEKLLSLRIIIK 546
            D   + F   +  +   +    L  +   +   +++           + +   LR+ + 
Sbjct: 140 RDPKGRGFLEQVHVSDRILFLQALDGLRRGEDAASVDLRLDRPSVSRDQRQFAYLRMDMT 199

Query: 547 KLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
               +          + D+S  +Q + +       AE  +  KS FLA VSHE+RTPL A
Sbjct: 200 ARRDADGELAAVIAQLRDVSVEQQLRAEAQSRAADAESANDAKSRFLAAVSHELRTPLNA 259

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           I+GFS+++  + FG   N R  EY   +  SG  +L +VN +LD+SKIE+G+  L  E  
Sbjct: 260 ILGFSDILIGEYFGKFENDRQREYVGLVRESGAHLLSVVNTMLDMSKIEAGRYELILEAF 319

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
            +  +V    S++ L A  K + + +     +  I+AD R+++QI +N++ NA+ FT +G
Sbjct: 320 DISASVRSCESMLALQAKTKGVTLTSRIQRGLGEIVADQRAIQQILINLVGNAVKFTEAG 379

Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
           G + I         + L V DTG+G+   +L    +PF QI N    R EGTGLGL L K
Sbjct: 380 GVVSIDAAARD-GILKLTVSDTGIGIAADKLALLGQPFVQIQNDYTRRFEGTGLGLSLVK 438

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIF 808
            +V  + G F I S P +GT+I I  
Sbjct: 439 GLVALHGGNFAIASQPGEGTIITIEI 464


>gi|327405173|ref|YP_004346011.1| PAS/PAC sensor signal transduction histidine kinase [Fluviicola
           taffensis DSM 16823]
 gi|327320681|gb|AEA45173.1| PAS/PAC sensor signal transduction histidine kinase [Fluviicola
           taffensis DSM 16823]
          Length = 438

 Score =  292 bits (748), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 78/389 (20%), Positives = 158/389 (40%), Gaps = 42/389 (10%)

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           ++    ++GI + N  G I+  N +   LFGY   ++        + +          T 
Sbjct: 40  ALFLHATEGILVTNSSGQIIRINPSAEHLFGYEHGELAGMKIEALIPRRFTQKHETNRTS 99

Query: 516 ILSLDLRQT--LEKITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEK--- 568
                  ++  L     G  K+     + I +              + DI+  K+ +   
Sbjct: 100 YAHHPHARSMGLGMDLFGLKKDGSEFPVEISLSPYSNKDGNFVIAFIIDITLRKEAEFRM 159

Query: 569 -----------------------------NKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                                          L  +    ++ +  KS F++  SHE RTP
Sbjct: 160 KTYFADLEKQVKNRTLVLEEAIAELEKTKRDLDISLAKEKELNEMKSRFVSMASHEFRTP 219

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           LT ++     + ++      +  + ++ + +  S N + DI+ND L +SK+E GK+    
Sbjct: 220 LTTMMSSV-SLISKYHERKDDGNHQKHVSKVKISINNLTDILNDFLSVSKLEEGKIVNEP 278

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719
           E +++   +SE +S ++     K+++        +  +  D + +K + LN+ SNAI F+
Sbjct: 279 EEMNIRIFISEIVSEMRTMLFGKQVISEDYLGEEL--VRLDPKILKNVLLNLFSNAIKFS 336

Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
              G I +S    ++ E+ + V+D G+G++  + E+  + F +  N+     +GTGLGL 
Sbjct: 337 SQDGVIELSVRKIAD-EIFITVKDHGIGISKEDQEQLFERFFRGKNAT--HIQGTGLGLS 393

Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           +    ++   G   I S   +GT + +  
Sbjct: 394 IVARYIELMNGTIEIESVQNEGTKVTLSI 422



 Score = 40.4 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/159 (11%), Positives = 36/159 (22%), Gaps = 16/159 (10%)

Query: 312 SAYFDEGENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYK--SVDDIEIAGGLST 368
                E +               V  S G +   NPS   L  Y+   +  ++I   +  
Sbjct: 28  ELKKMESKEGNDALFLHATEGILVTNSSGQIIRINPSAEHLFGYEHGELAGMKIEALIPR 87

Query: 369 LL------------DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
                           P          +   + D +       L        N +    I
Sbjct: 88  RFTQKHETNRTSYAHHPHARSMGLGMDLFGLKKDGSEFPVEISLSPYSNKDGNFVIAFII 147

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
                 +    M     + E    +     +E  + +L 
Sbjct: 148 DITLRKEAEFRMKTYFADLE-KQVKNRTLVLEEAIAELE 185


>gi|253699101|ref|YP_003020290.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21]
 gi|251773951|gb|ACT16532.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21]
          Length = 955

 Score =  292 bits (748), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 97/543 (17%), Positives = 191/543 (35%), Gaps = 70/543 (12%)

Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN--LFYANPSFLLLTK 353
            +          H    A     E       ++ P P  +Y  G   +   N +F +   
Sbjct: 314 LRALLIVREQAVHKEAEAELRASEQRYRYLFEQNPAPMLIYERGTMQMLAVNDAFAVGYG 373

Query: 354 YKSVDDIEIAGGLSTLLDAPK----------LSDNNAIKPVMLYRSDRTCIAASARLHTI 403
           Y + + +  A GL+ L    +          LS +  +      R D T        H +
Sbjct: 374 YSNEEAL--ALGLTDLYPEEEKQKITEVAAGLSGHTYVGEWHHRRKDGTVFPIVVTSHDM 431

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
            +    +                   +  +  +  D +  ++ +E E      +LE + D
Sbjct: 432 TYGGRTA-------------------RIAVITDITDRKAMEKAIEEESTFNRLLLEHSPD 472

Query: 464 GIAIINRE-GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522
           GI II+ +    ++ N AV +  GY  E+  +          T       +  I+     
Sbjct: 473 GIVIIDPKTARFINFNAAVCRQLGYSREEFAQLSVFDIEAVETREDTRRRIEGIVREGR- 531

Query: 523 QTLEKITLGSTKEEKLLSLRII--IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
              +  T+  T + +L ++++   I  +     Y     DI+E K+ + +L  ++K+   
Sbjct: 532 --GDFETMQRTSQGELRNVQVTAQILTIQDQQVYYCIWRDITEHKKLEEQLRQSQKM--- 586

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
                      V+H+    L  IIG ++    Q   P  +P   +Y ++I ++     DI
Sbjct: 587 --ESVGRLAGGVAHDFNNMLGVIIGSAD--LCQHQVPADSP-LQKYLDHILKAAKRSSDI 641

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILAD 700
              LL  S+ E     +  +PV+L+  + ++  ++      + + +    +  +  ++ D
Sbjct: 642 TRQLLAFSRKE----VVSPKPVNLNSLIIDSEKMLCRLI-GEDVKLTFKPSTGLWTVMID 696

Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTT--------------HTSNEEVILRVRDTGV 746
                QI +N+ +N+    P GG + I+T                   + V + V DTG 
Sbjct: 697 PAQFDQILMNLSANSRDAMPDGGTLDIATGNVHLDAGYCRHHSDTVPGDYVKITVSDTGT 756

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           GM     +   +PF          G G          +V  N G   ++S   +G++  I
Sbjct: 757 GMNRETRDHIFEPFFTTKGVGVGTGLGL----ATVYGIVTQNNGFINVYSELGQGSVFNI 812

Query: 807 IFP 809
             P
Sbjct: 813 YLP 815



 Score = 74.7 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 22/170 (12%), Positives = 51/170 (30%), Gaps = 7/170 (4%)

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
            +    +L    I           +    I  E    +  + ++     +   + E    
Sbjct: 290 SYRNRLALVFGGILLGGIIICILVLRALLIVREQAVHKEAEAELRASEQRYRYLFEQNPA 349

Query: 464 GIAIINR-EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522
            + I  R    +L+ N A +  +GY  E+ L    T    +         +TE+ +    
Sbjct: 350 PMLIYERGTMQMLAVNDAFAVGYGYSNEEALALGLTDLYPEEEKQK----ITEVAAGLSG 405

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKNK 570
            T         K+  +  + +    + +         + DI++ K  +  
Sbjct: 406 HTYVGEWHHRRKDGTVFPIVVTSHDMTYGGRTARIAVITDITDRKAMEKA 455



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 25/287 (8%), Positives = 71/287 (24%), Gaps = 18/287 (6%)

Query: 178 FRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSV-EKEKYDIFSQQSPP----P 232
            R   IV    V  +  A  +  ++++ +L E       + E+    + +          
Sbjct: 314 LRALLIVREQAVHKEAEAELRASEQRYRYLFEQNPAPMLIYERGTMQMLAVNDAFAVGYG 373

Query: 233 HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL 292
           +   +     LT+ Y  ++    TE    L+                +       +  T 
Sbjct: 374 YSNEEALALGLTDLYPEEEKQKITEVAAGLSGHTYVGEWHHRRKDGTVFPIVVTSHDMTY 433

Query: 293 QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLL 350
              +          +  ++    +E        ++  P    +           N +   
Sbjct: 434 GGRTARIAVITDITDRKAMEKAIEEESTFNRLLLEHSPDGIVIIDPKTARFINFNAAVCR 493

Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
              Y   ++                 +    +     R +           T+Q   +  
Sbjct: 494 QLGYSR-EEFAQLSVFD--------IEAVETREDTRRRIEGIVREGRGDFETMQRTSQGE 544

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
           L        +     +      I  +  + +  + ++     ++ S+
Sbjct: 545 LR-NVQVTAQILTIQDQQVYYCIWRDITEHKKLEEQLRQS-QKMESV 589



 Score = 55.0 bits (131), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 30/301 (9%), Positives = 78/301 (25%), Gaps = 16/301 (5%)

Query: 96  KEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGT 155
             +++      G    + + + L D+           +   L   +T+ G+      +GT
Sbjct: 362 LAVNDAFAVGYGYSNEEALALGLTDLYPEEEKQKITEVAAGL-SGHTYVGEWHHRRKDGT 420

Query: 156 NLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHS 215
              + +    +    R           ++             +        L E      
Sbjct: 421 VFPIVVTSHDMTYGGRTARI------AVITDITDRKAMEKAIEEESTFNRLLLEHSPDGI 474

Query: 216 SVEKEKYDIFSQQSPPPHLRMK------NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
            +   K   F   +     ++        ++S          +  +     ++       
Sbjct: 475 VIIDPKTARFINFNAAVCRQLGYSREEFAQLSVFDIEAVETREDTRRRIEGIVREGRGDF 534

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
              +      L          T+Q+       +     H  L     + + +  E+V + 
Sbjct: 535 ETMQRTSQGELRNVQVTAQILTIQDQQVYYCIWRDITEHKKLEEQLRQSQKM--ESVGRL 592

Query: 330 PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389
                 +   N+         L +++   D  +   L  +L A K S +   + +   R 
Sbjct: 593 AGGVA-HDFNNMLGVIIGSADLCQHQVPADSPLQKYLDHILKAAKRSSDITRQLLAFSRK 651

Query: 390 D 390
           +
Sbjct: 652 E 652


>gi|160936746|ref|ZP_02084113.1| hypothetical protein CLOBOL_01637 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440537|gb|EDP18282.1| hypothetical protein CLOBOL_01637 [Clostridium bolteae ATCC
           BAA-613]
          Length = 1070

 Score =  292 bits (748), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 121/793 (15%), Positives = 245/793 (30%), Gaps = 118/793 (14%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN------HIGDLLKRQNT 142
           +D H  L   ++     IG    +          +  + +P         + D       
Sbjct: 37  LDGHFTLIWANDFFYSLIGYSQEEFATRFHNCPDEYFYNNPEGYQALEKSVRDARANGEK 96

Query: 143 WYGKTTLWPI-EGTNLYVPIDLAALPIYSRNREFSGFR-GFGIVHVNRVDNDPRALGKRL 200
                      +G +L+V +  A       +    G++  +  +       + +   +  
Sbjct: 97  GNSICVRLVTSDGCSLWVKLQAAFT-----DEYVDGYQVAYTTLTDVTEMMEAQLEQEHT 151

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYY---------- 247
            +    +   ++   S+ K                      ++    +            
Sbjct: 152 QQTLEQMVHEQEMLMSILKVSVSKHMVDEHYTCVWANEYYYQLIGYPKEKYESLFHNHPD 211

Query: 248 ------AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301
                     + L      +L + +            + + +  K +             
Sbjct: 212 EYYQNNPEGWEQLTATVADVLENGKDQYDIITRMKHEDGSSFWVKLFSYFTDEYIDGYRS 271

Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIE 361
             +     +        + +    ++       V  H  L +AN  +  L  Y   +   
Sbjct: 272 TYTVMMDVTELVQMKNEQEMLMRAMEVSVSLHLVDKHFTLVWANDFYYDLIGYSKTE--- 328

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                 TL                   +  +      ++  I    + S  + F+P    
Sbjct: 329 ----YETLFHNHCDE--------YFAENKNSWNKIHEKVQEITEAGKRSYEL-FVPLRIP 375

Query: 422 NQFPENMPQNGIEPEDVDTRINKR--------KMEIEVMQLCSILEATS----------D 463
           +     +   G   ++                ++     +     +             D
Sbjct: 376 DGSTRWVKMTGFFTDEYQDGKQMAYTTMVDVTELMQIQQEKAVAYDNIPGFIVKHRILPD 435

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
            I + +    I         +F      +        LE  +   M     E        
Sbjct: 436 KIVMADASDRIT-------DIFNVDTGKLDSFDIYSVLEPESR-TMIEASHESFRQGKPF 487

Query: 524 TLEKITLGSTKEEKLLSLRII-IKKLPFSSCYSLTMHDIS--------EWKQEKN--KLS 572
                       E+  S+    I  +     Y     D++        + K  +    L 
Sbjct: 488 DGTICLRDRYTRERWFSIHSTCIDSIADDPVYLTVFIDVTDVTELRVMQKKLTEQKTALQ 547

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
            A + A+  +  KSDFL+R+SH++RTPL AI G + +IK+  + P    R ++  + I  
Sbjct: 548 DALEAAKHANRAKSDFLSRMSHDLRTPLNAIQGMARIIKSHVYDP---ERVLDSTDKIML 604

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT---S 689
           S +L++ ++N++LD SK+ESG+M L  E V+L E V   +++VQ    EK +  +T    
Sbjct: 605 SNDLLISLINEVLDTSKVESGQMLLAEEEVNLAELVQGVVNMVQPQLGEKNLRFKTYANR 664

Query: 690 FANNIPRILADLRSVKQIALNIL----------SNAIHFTPSGGQIIIST-----THTSN 734
             +    +++DL+                    SNA+ +TP GG I +         T  
Sbjct: 665 ITHE--TVVSDLQ----------RLQQLLLNLLSNAVKYTPEGGSITLEINEKPSEQTDM 712

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
                 V DTG+GM    L +  +PF +  +++    +GTGLG+ + K + +   G   +
Sbjct: 713 AYYEFVVSDTGIGMKPEFLARVFEPFERADDAKIQAVQGTGLGMSICKKIAELMGGTIEV 772

Query: 795 FSTPAKGTLIEII 807
            ST  KG+   + 
Sbjct: 773 ESTYGKGSRFTVS 785



 Score = 42.3 bits (98), Expect = 0.34,   Method: Composition-based stats.
 Identities = 16/151 (10%), Positives = 52/151 (34%), Gaps = 12/151 (7%)

Query: 453 QLCSILEATSDGIA--IINREGIILSTNRAVSKLFGYPVEDILRKPFTV-----FLEQNT 505
           +   ++   S GI+  +++    ++  N     L GY  E+   +         +     
Sbjct: 20  EYRILVGLLSVGISKHLLDGHFTLIWANDFFYSLIGYSQEEFATRFHNCPDEYFYNNPEG 79

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI-IIKKLPFSSCYSL---TMHDI 561
              +   + +  +   +          T +   L +++       +   Y +   T+ D+
Sbjct: 80  YQALEKSVRDARANGEKGN-SICVRLVTSDGCSLWVKLQAAFTDEYVDGYQVAYTTLTDV 138

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
           +E  + + +  H ++  E+    +   ++ +
Sbjct: 139 TEMMEAQLEQEHTQQTLEQMVHEQEMLMSIL 169


>gi|144901271|emb|CAM78135.1| sensory transduction histidine kinase [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 727

 Score =  292 bits (748), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 87/613 (14%), Positives = 196/613 (31%), Gaps = 39/613 (6%)

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
              G   + +    +         L +   V  L    A    V +    P+L   ++  
Sbjct: 145 ADDGVRLMVERFDRVAEIADLTRQLAIGAAVLILLILAAATLIVWRNLLLPVLQVAQTMR 204

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
              +                  +QN + +  E L               E          
Sbjct: 205 GTLDGGAQERSLPSPATAEMAVMQNAAVQLREALHRA--ALRETALKASEQRLSSIFATS 262

Query: 330 PIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388
                +    G +  AN SFL L  +    D+     L  L      +    +   ML  
Sbjct: 263 EAAIVLSDAQGQVMQANDSFLRLIDHDKALDL----SLDHLTHGDDAAREAPLLRAML-- 316

Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
            +            ++ +  + + +        +          +  +  +    ++++ 
Sbjct: 317 -NGETDRYRLD-KRLRRHDGSCVWVDASVRAIRDGDAPPHQFVTVAIDISERMRAEQEL- 373

Query: 449 IEVMQLCSILEATSDGIAIINR--EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
                + ++++ ++D I  ++    G ++  N A  + FG   + +L      +      
Sbjct: 374 ---HFIRALVDQSADPIYCLDPLDGGRMVWANAATCRHFGTSQKHLLTMRIPDWDPNIDA 430

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEW 564
             +          +   T    T        ++ + +    L        +  + DI + 
Sbjct: 431 PAVEAMWQN---PEPLSTRVFETTHRVAGGDIIPVEVSATWLEHDGKPYVAGYIRDIRDR 487

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
            +             + +     F    SH+++ PL  +  F ++++ +    L      
Sbjct: 488 NR-------MLMAVRRSNEDLQQFAYVASHDLQEPLRMVASFLQLLERRYADRLDTA-GR 539

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           EY  +       +  ++ DLL  S+I+S    L  +PV L      A   +     E   
Sbjct: 540 EYIQFAVDGAVRMKQLIEDLLAYSRIDSRG--LQPQPVDLAVIAQAACDNLVSAIAENGG 597

Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG--QIIISTTHTSNEEVILRVR 742
             R S ++ +P ++ D   + ++  N++ NA+ +        I +S      +  I+ V 
Sbjct: 598 --RVSLSDRLPMVMGDQPQLIRLLQNLIGNALKYRAPDRFPDITVS-AQRHGDTWIIAVS 654

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G+G+     ++    F ++        EGTG+GL + K +V+ + G+ ++ S    G+
Sbjct: 655 DNGIGIAPQYHDRIFMIFQRLHG--IAAYEGTGIGLAICKRIVERHGGEIWVESQENTGS 712

Query: 803 LIEIIFPLYDTSH 815
             +      DT+ 
Sbjct: 713 TFKFTLHAADTAA 725



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/275 (9%), Positives = 66/275 (24%), Gaps = 6/275 (2%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           DA G + + ++   + I     K + + L  ++          +   +    T   +   
Sbjct: 270 DAQGQVMQANDSFLRLI--DHDKALDLSLDHLTHGDDAAREAPLLRAMLNGETDRYRLDK 327

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
                    V +D +   I   +     F    I                +        +
Sbjct: 328 RLRRHDGSCVWVDASVRAIRDGDAPPHQFVTVAI--DISERMRAEQELHFIRALVDQSAD 385

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
                  ++  +    +  +       +  + ++       +      +      E  S 
Sbjct: 386 PIYCLDPLDGGRMVWANAATCRHFGTSQKHLLTMRIPDWDPNIDAPAVEAMWQNPEPLST 445

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
              E  H +        +   T   +  + +     R+    +           +     
Sbjct: 446 RVFETTHRVAGGDIIPVEVSATWLEHDGKPYVAGYIRDIRDRNRMLMAVRRSNEDLQQFA 505

Query: 330 PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364
                 +          SFL L + +  D ++ AG
Sbjct: 506 --YVASHDLQEPLRMVASFLQLLERRYADRLDTAG 538


>gi|254226171|ref|ZP_04919766.1| sensor histidine kinase LuxQ [Vibrio cholerae V51]
 gi|125621273|gb|EAZ49612.1| sensor histidine kinase LuxQ [Vibrio cholerae V51]
          Length = 857

 Score =  292 bits (748), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 81/377 (21%), Positives = 160/377 (42%), Gaps = 21/377 (5%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           R++  +  Q   +         + N  G ++  N +    F              FL + 
Sbjct: 350 RRLANKEKQFEDLFNFALSPTMLWNTSGRLIRMNPSAQIQFLREDAQ------NHFLFEI 403

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT-MHDISE 563
               +   +T     +    +         + ++    +    +       +T   DI+ 
Sbjct: 404 LERQLLPTITNAAQGNNPSDVTTEV-----DGRVYRWNLSPIMVEGQIISIITQGQDITT 458

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + + +   A++ AE+ +  +++FLA++SHE+RTPL  ++G S+++K        N   
Sbjct: 459 IAEAEKQSQAARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRTPL----NDEQ 514

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            E+   +  SG  +L ++ND+LD S++E GK  +        E V     + +   NEK 
Sbjct: 515 REHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKNEFRXKELVCAIDRIYRPLCNEKG 574

Query: 684 ILIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EVIL 739
           + +  +        + +D   + QI  N+L+NAI FT  G  I +       +   ++++
Sbjct: 575 LELVVNSNITTAAIVRSDQIRINQILFNLLNNAIKFTHQGS-IRVELQLIEGDPLAQLVI 633

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
           +V DTG+G+   +L    +PF Q  ++      G+GLGL +  ++V+   G+ ++ S   
Sbjct: 634 QVVDTGIGIREQDLTVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHVSSEYG 693

Query: 800 KGTLIEIIFPLYDTSHP 816
            GT  EI  P+     P
Sbjct: 694 IGTRFEIQLPIELVERP 710


>gi|307151007|ref|YP_003886391.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306981235|gb|ADN13116.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 1016

 Score =  292 bits (748), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 83/614 (13%), Positives = 206/614 (33%), Gaps = 65/614 (10%)

Query: 225 FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYT 284
            +      + ++++++    +      +   + +  +L          +D          
Sbjct: 317 IAIHQSTIYEQLQSELIERRKAQQALREARDSLEKRVLQRTAELANTNQDLQKTLAELQI 376

Query: 285 KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFY 343
            ++                            D       +   + P  + V      +  
Sbjct: 377 AQKQLSQQNEALIN------------ARKMADAERRRYQDLFSEAPDGYLVTDVAAKIQE 424

Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403
           AN +   L +    + +  +  L        ++  +           +        L   
Sbjct: 425 ANRAASALLRVSQEELVGQSLLL-------YIAPVDRQIFERQLAQLQPLQDWEVHLKP- 476

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
                ++           +   + +    +  +  D +  ++K++ +     ++++ ++D
Sbjct: 477 --PNGSAFVTVIAVTIINDSLGQPVGLRWLLRDISDRKQAEQKIQQQ----AALIDISTD 530

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
            I + + E  IL  +   ++L+G+ +++ L K        ++   +   L  I++ +   
Sbjct: 531 AIFVCDLENNILFWSEGATRLYGWTIQETLGKKANELFYTSSSFPIEPSLNIIINKN--- 587

Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAE 579
           T        TK+ + + +      +   +       +   DI+E K  + +   A+++  
Sbjct: 588 TWYGELEQITKDNRKIIVESRWTLVRDETGQPQSILVVNTDITEKKYLEVQFYRAQRL-- 645

Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639
                     + ++H++   L  I+ F   +  Q+F P  + +  E    ++ S      
Sbjct: 646 ---ESIGTLASGIAHDLNNILQPIL-FISHLLKQKF-PYLDEQTKERLKMLEDSSRRGTS 700

Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT-SFANNIPRIL 698
           +V  +L  +  E G        V +   + E I + Q     K I I+     +++  + 
Sbjct: 701 LVRQILSFACGEEG----SRAHVQVKHILREVIQVAQKTFP-KSINIQMKRITSDLWTVH 755

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIIS--------------TTHTSNEEVILRVRDT 744
           AD   + Q+ +N++ NA    P GG + +S                      V++   DT
Sbjct: 756 ADATQLHQVFMNLMVNARDAMPEGGNLSLSAENLFIDETFARMDIEAHVGFYVVISFTDT 815

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G G+++  +E+   PF          G+GTGLGL   + +V  + G   + S   KG+  
Sbjct: 816 GTGISSEIIERIFDPFFTTKEP----GKGTGLGLSTVRGIVKNHGGFVRVSSVLGKGSQF 871

Query: 805 EIIFPLYDTSHPHD 818
           ++  P  D     +
Sbjct: 872 KVYLPAVDGQETQE 885



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/404 (8%), Positives = 113/404 (27%), Gaps = 15/404 (3%)

Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT- 244
                   + + K+   +   +  + +      K    + +           ++V     
Sbjct: 138 DITARQQAQEVLKQQLLRQRLVVNMLERIRKSLKLTEILHTTVEEVRQFLDTDRVIIFRF 197

Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
           +     D V+++          +++ +         +  T  + +   Q          +
Sbjct: 198 DPDWSGDIVVESVGQEWTAILSTTIRDPCFTKANKGSGSTYIEMYR--QGLVTSINNIYT 255

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364
            +          + +      V   PI    Y  G L   + +     + + +D ++   
Sbjct: 256 AKLQQCHLDLLAQFQVKANLVV---PILQAEYLWGLLIAHHCASPRQWQPQEIDLLQQLA 312

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
               +              ++  R  +  +  +      +  +  +         +    
Sbjct: 313 IQVGIAIHQSTIYEQLQSELIERRKAQQALREARDSLEKRVLQRTAELANTNQDLQKTLA 372

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
              + Q  +  ++      ++  + E  +   +     DG  + +    I   NRA S L
Sbjct: 373 ELQIAQKQLSQQNEALINARKMADAERRRYQDLFSEAPDGYLVTDVAAKIQEANRAASAL 432

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK----LLS 540
                E+++ +   +++      +    L ++     +   +               +++
Sbjct: 433 LRVSQEELVGQSLLLYIAPVDRQIFERQLAQL-----QPLQDWEVHLKPPNGSAFVTVIA 487

Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
           + II   L         + DIS+ KQ + K+     + +  +  
Sbjct: 488 VTIINDSLGQPVGLRWLLRDISDRKQAEQKIQQQAALIDISTDA 531



 Score = 45.8 bits (107), Expect = 0.032,   Method: Composition-based stats.
 Identities = 18/177 (10%), Positives = 45/177 (25%), Gaps = 12/177 (6%)

Query: 35  ETEKSKKENPCHD-SFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHG 93
           + +K+  E         Q N    N   +++      ++ F   P    V      D   
Sbjct: 366 DLQKTLAELQIAQKQLSQQNEALINARKMADAERRRYQDLFSEAPDGYLV-----TDVAA 420

Query: 94  YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIE 153
            ++E +      +     +++G  L      +           L +              
Sbjct: 421 KIQEANRAASALLRVSQEELVGQSLLLYIAPVDRQ---IFERQLAQLQPLQDWEVHLKPP 477

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
             + +V + +A   I     +  G R   ++             ++         + 
Sbjct: 478 NGSAFVTV-IAVTIINDSLGQPVGLRW--LLRDISDRKQAEQKIQQQAALIDISTDA 531



 Score = 41.9 bits (97), Expect = 0.49,   Method: Composition-based stats.
 Identities = 31/269 (11%), Positives = 70/269 (26%), Gaps = 13/269 (4%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D    +   SE   +  G    + +G +  ++       P     +++  +NTWYG+   
Sbjct: 536 DLENNILFWSEGATRLYGWTIQETLGKKANELFYTSSSFPIEPSLNIIINKNTWYGELEQ 595

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIV-HVNRVDNDPRALGKRLDKKFSHLH 208
              +     + ++     +     +    +   +V               R  +  S   
Sbjct: 596 ITKDNR--KIIVESRWTLVRDETGQP---QSILVVNTDITEKKYLEVQFYRAQRLESIGT 650

Query: 209 EIKKGHSSVEKEKYDIFSQQ------SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
                   +      I           P    + K ++  L +    +   L  +     
Sbjct: 651 LASGIAHDLNNILQPILFISHLLKQKFPYLDEQTKERLKMLEDSS-RRGTSLVRQILSFA 709

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
             EE S    +  H +       ++ F    N   +         H   +       NL 
Sbjct: 710 CGEEGSRAHVQVKHILREVIQVAQKTFPKSINIQMKRITSDLWTVHADATQLHQVFMNLM 769

Query: 323 PETVDKCPIPFFVYSHGNLFYANPSFLLL 351
               D  P    +       + + +F  +
Sbjct: 770 VNARDAMPEGGNLSLSAENLFIDETFARM 798


>gi|148265586|ref|YP_001232292.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter
           uraniireducens Rf4]
 gi|146399086|gb|ABQ27719.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter
           uraniireducens Rf4]
          Length = 641

 Score =  292 bits (748), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 92/479 (19%), Positives = 188/479 (39%), Gaps = 40/479 (8%)

Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403
           A+   L +      +  + +        +   S++       L        +     H +
Sbjct: 180 ASDELLRIMHLSRDEATQES------FASVVHSEDRENVMWHLRLGVEHGKSYEIE-HRL 232

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
           Q+   +   +  I     N   + +   G   +  + +  + ++  +  +L +I ++ SD
Sbjct: 233 QFGEGSCRWVYSIVEPSVNSAGKVVRLYGTTQDITERKQAEVELRNKTNELQAIFDSISD 292

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS-VMNHYLTEILSLDLR 522
           GI + + +G+I   N    +L  YP E +  K         TPS      +   L  +  
Sbjct: 293 GITVYDHDGLIQHHNLISPQL--YPKEILPGKSCRDIFHPETPSMPQLCPVERALRGERV 350

Query: 523 QTLEKITLGSTKEEK-LLSLRIIIK--KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579
           +T +        ++     +        L   +   +   DISE + ++  L   +K++ 
Sbjct: 351 ETSQ--VSVREGQKTLYFDITATPIKDALGEKNRALVFFRDISEKRLQEMHLIQTEKMSG 408

Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ-RFGPLGNPRYI-----EYANYIDRS 633
                       ++HEI  PLT+I G++E +  + R  P             Y   I R 
Sbjct: 409 IGV-----LATGIAHEINNPLTSIAGYAEGLLRRFRDEPALKDDCRLDVFPHYLEVIVRE 463

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693
                 I++ LL  S+   G        V ++  + E + L++     ++I + T  + +
Sbjct: 464 SYRCKGIIDHLLSFSRKSDG----SAVEVDMNVVLLEILELLRHQQIYRQIEVVTHLSKD 519

Query: 694 IPRILADLRSVKQIALNILSNA---IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
           +  +L D   ++Q+ +N+L NA   I  T   G + ++T +  +  V +R+RDTG G+  
Sbjct: 520 LHSVLGDPSGLRQVCMNLLINAHQSIKGT---GLVELTTENLDDTTVSVRIRDTGCGIAQ 576

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            ++++   PF          G+G GLGL L   ++  + G+  + S P +GT   ++ P
Sbjct: 577 DKIDRIWDPFFTTK----EVGKGIGLGLALTYNIIKRHGGEIQVESRPGEGTQFTVLLP 631



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 76/209 (36%), Gaps = 13/209 (6%)

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
             Q  +E +  + R  + ++E    +   + +    G    +REG+I S N    +L G 
Sbjct: 9   AHQLELETKIEELRKFQEELEASRNKYALLYDFAPVGYFTFDREGVIQSVNLTGVRLLGV 68

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
              D++ + F  F+  +   V  +YL  +     ++T         K+   + +  ++ +
Sbjct: 69  ERNDLVGRRFGEFVADDEWFVFVNYLATVFCSQGKETCRLGLAQRDKQPLFVRIEAMVTE 128

Query: 548 LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV---SHEIRTPLTAII 604
                     + DI+E K  +  LS       + +  K+  +  V   S +   P T+ +
Sbjct: 129 SGEE--CLAVLVDITEKKLAERALS-----ESEYNLAKAQSMTHVGSWSFD---PTTSEV 178

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
             S+ +               +A+ +   
Sbjct: 179 KASDELLRIMHLSRDEATQESFASVVHSE 207



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/292 (11%), Positives = 83/292 (28%), Gaps = 18/292 (6%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
                  +   N      D  P+ +F +   G +   N + + L   +  D +       
Sbjct: 22  RKFQEELEASRNKYALLYDFAPVGYFTFDREGVIQSVNLTGVRLLGVERNDLVG------ 75

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
                    D   +    L     +    + RL   Q +++           +A      
Sbjct: 76  RRFGEFVADDEWFVFVNYLATVFCSQGKETCRLGLAQRDKQP-----LFVRIEAMVTESG 130

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
                +  +  + ++ +R +      L      T  G    +     +  +  + ++   
Sbjct: 131 EECLAVLVDITEKKLAERALSESEYNLAKAQSMTHVGSWSFDPTTSEVKASDELLRIMHL 190

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
             ++  ++ F   +       +  +L   +        E        E     +  I++ 
Sbjct: 191 SRDEATQESFASVVHSEDRENVMWHLRLGVEHGKS--YEIEHRLQFGEGSCRWVYSIVEP 248

Query: 548 LPFSSCYSLTM----HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
              S+   + +     DI+E KQ + +L +     +      SD +    H+
Sbjct: 249 SVNSAGKVVRLYGTTQDITERKQAEVELRNKTNELQAIFDSISDGITVYDHD 300



 Score = 68.5 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 44/472 (9%), Positives = 116/472 (24%), Gaps = 41/472 (8%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCD-VSDILHIDPNNHIGDLLKRQNTWYG 145
           +  D  G ++ ++    + +G     ++G R  + V+D       N++  +   Q     
Sbjct: 47  FTFDREGVIQSVNLTGVRLLGVERNDLVGRRFGEFVADDEWFVFVNYLATVFCSQGKETC 106

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +  L   +   L+V I+     + + + E        ++                +   +
Sbjct: 107 RLGLAQRDKQPLFVRIE----AMVTESGE----ECLAVLVDITEKKLAERALSESEYNLA 158

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHL----RMKNKVSSLTEYYAHKDDVLKTEKYPL 261
               +    S                  +    R +    S       +D         L
Sbjct: 159 KAQSMTHVGSWSFDPTTSEVKASDELLRIMHLSRDEATQESFASVVHSEDRENVMWHLRL 218

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN- 320
                 S   +        +            N++ +           +     +     
Sbjct: 219 GVEHGKSYEIEHRLQFGEGSCRWVYSIVEPSVNSAGKVVRLYGTTQDITERKQAEVELRN 278

Query: 321 ---LTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
                    D       VY   G + + N   L+  +    + +                
Sbjct: 279 KTNELQAIFDSISDGITVYDHDGLIQHHN---LISPQLYPKEILPGKSCRDIFHPETPSM 335

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
                    L          S R        + +L          +   E         +
Sbjct: 336 PQLCPVERALRGERVETSQVSVR------EGQKTLYFDITATPIKDALGEKNRALVFFRD 389

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             + R+ +  + I+  ++  I      G+      GI    N  ++ + GY    + R  
Sbjct: 390 ISEKRLQEMHL-IQTEKMSGI------GVLAT---GIAHEINNPLTSIAGYAEGLLRRFR 439

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQ----TLEKITLGSTKEEKLLSLRII 544
               L+ +    +  +  E++  +  +        ++     +   + + + 
Sbjct: 440 DEPALKDDCRLDVFPHYLEVIVRESYRCKGIIDHLLSFSRKSDGSAVEVDMN 491


>gi|261212489|ref|ZP_05926774.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio sp. RC341]
 gi|260838420|gb|EEX65076.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio sp. RC341]
          Length = 856

 Score =  292 bits (748), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 77/371 (20%), Positives = 158/371 (42%), Gaps = 21/371 (5%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           R++  +  Q   +         + N  G ++  N +    F              FL + 
Sbjct: 350 RRLANKEKQFEDLFNFALSPTMLWNTAGRLIRMNPSAQIQFLREDAQ------NHFLFEI 403

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT-MHDISE 563
               +   +T +        +         + ++    +    +       +T   D++ 
Sbjct: 404 LEKQLLPMITYVAQGKNPSEVTTEV-----DGRVYRWNLSPIMVEGQIISVITQGQDVTS 458

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + + +   A++ AE+ +  +++FLA++SHE+RTPL  ++G S+++K            
Sbjct: 459 IAEAEKQSQVARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRTSL----TDEQ 514

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            E+   +  SG  +L ++ND+LD S++E GK  +      L E V     + +   N+K 
Sbjct: 515 REHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKNEFPLQELVCAIDRIYRPLCNDKG 574

Query: 684 ILIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH---TSNEEVIL 739
           + +  +        + +D   + QI  N+L+NAI FT  G  + +           ++++
Sbjct: 575 LQLIVNSNITRSTMVRSDQIRINQILFNLLNNAIKFTHQGS-VRVELELMVGDPLAQLVI 633

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
           +V DTG+G+   +L    +PF Q  ++      G+GLGL +  ++V+   G+ ++ S   
Sbjct: 634 QVIDTGIGIREQDLAVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHVSSEYG 693

Query: 800 KGTLIEIIFPL 810
            GT  EI  P+
Sbjct: 694 VGTRFEIQLPI 704


>gi|154247224|ref|YP_001418182.1| histidine kinase [Xanthobacter autotrophicus Py2]
 gi|154161309|gb|ABS68525.1| histidine kinase [Xanthobacter autotrophicus Py2]
          Length = 837

 Score =  292 bits (748), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 107/703 (15%), Positives = 226/703 (32%), Gaps = 34/703 (4%)

Query: 122 SDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF 181
           +D+    P     +L    + +         E       +D    P+    R  +G    
Sbjct: 147 ADLFGRTPETLKAELGPASSAFETALARLKAEDGAFSQTLDTPRGPLRLDGRSRAGAGIL 206

Query: 182 GIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS 241
            +  ++   +   A         + L +     + +      +                 
Sbjct: 207 LLAPLSSETSGHEAGPMAS--GLAALLDAAPAPAWLRGADGALSYVNPAFVVAVGAASAE 264

Query: 242 SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301
                     D             +    ++    T    +  +      +   +  +  
Sbjct: 265 EARAQGLDLLDGKTRAAAASAEGADGHFRQRVKAVTKGQRRQMEVVEVAGIFGTAGIA-- 322

Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDI 360
            +   +     A   +       T+D+      ++     L + N ++  L         
Sbjct: 323 -IDVTSEEDARAEMKQAVVAHRRTLDQLTTAVAIFGADERLVFHNAAYERLFDLSPA--- 378

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS---ARLHTIQWNRENSLAMTFIP 417
                           +   ++ +   R            A+L       E       +P
Sbjct: 379 ---------FLDQHPPEGEILEDLRTRRKVPEQADFRGWRAQLREAYRAIEPVNDWWHLP 429

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI----LEATSDGIAIINREGI 473
             +  +        G      D       +E     L  I    L+  ++ +A+   +G 
Sbjct: 430 GGQMLRVVVTPNAEGGVTYLFDDLSEHMALESRYNTLIRIQGETLDGLAEAVAVFGSDGR 489

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT-EILSLDLRQTLEKITLGS 532
           +   N A   L+      +  +P    +      +         +   +     +  +  
Sbjct: 490 LNLYNHAFLGLWSLEARALGERPHVDAVAALCRPLHGETSAFARIRHAVTTIGPREAVTL 549

Query: 533 TKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
             E     +     +        +T  D+++  + +  L    +  E     K+ F+  V
Sbjct: 550 RIERPDGRVLDGATQPLPDGGTMVTFRDVTDSVKVERALIERAEALEAADKLKNAFVGHV 609

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           S+ +RTPL  ++G+++++++   GPL N R  +Y  ++ +S + +  +++D+LD++ I++
Sbjct: 610 SYHLRTPLNTLLGYADMLRDGLAGPL-NTRQQDYLEHMRQSSDQLRALIDDILDLASIDA 668

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712
           G M L    V + E V      V+    E  + +  S   +    +AD R V+QI  N+L
Sbjct: 669 GAMELDLSDVDVGETVLGVAEAVRDPVAEAGLNLAVSVGPDAGHFVADGRRVRQILFNLL 728

Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           SNAI  +P+GG + +         ++  VRD G G+     +   + F     S   R  
Sbjct: 729 SNAIAVSPAGGTVSLGAVRRD-GALVFTVRDEGPGVPAEVADTLFERFE--SRSAGPRHR 785

Query: 773 GTGLGLPLAKAMVDANMGKFYIFST---PA-KGTLIEIIFPLY 811
           G GLGL + ++ +  + G   +      P  KGTL   IFPL 
Sbjct: 786 GVGLGLAIVRSFMTLHGGSVTVAPAGRGPDAKGTLATCIFPLS 828



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 52/416 (12%), Positives = 123/416 (29%), Gaps = 33/416 (7%)

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244
             +RV  D R   +  ++  +          +  +    + S  +P   L    +  +  
Sbjct: 90  RSHRVAKDLRGRIEAAERAAADAAASAARARAEAQACRVLLSDGAPAFLLWTGREAPA-- 147

Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
           + +    + LK E  P  ++ E++L   +             +    L   S+     L 
Sbjct: 148 DLFGRTPETLKAELGPASSAFETALARLKAEDGAFSQTLDTPRGPLRLDGRSRAGAGILL 207

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS---HGNLFYANPSFLLLTKYKSVDDIE 361
                S ++  + G   +         P   +     G L Y NP+F++     S ++  
Sbjct: 208 LAPLSSETSGHEAGPMASGLAALLDAAPAPAWLRGADGALSYVNPAFVVAVGAASAEE-A 266

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
            A GL  L                   +D        R+  +   +   + +        
Sbjct: 267 RAQGLDLL------DGKTRAAAASAEGADG---HFRQRVKAVTKGQRRQMEVV------- 310

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
            +        GI  +       + +M+  V+     L+  +  +AI   +  ++  N A 
Sbjct: 311 -EVAGIFGTAGIAIDVTSEEDARAEMKQAVVAHRRTLDQLTTAVAIFGADERLVFHNAAY 369

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-------LGSTK 534
            +LF      + + P    + ++  +               Q  E               
Sbjct: 370 ERLFDLSPAFLDQHPPEGEILEDLRTRRKVPEQADFRGWRAQLREAYRAIEPVNDWWHLP 429

Query: 535 EEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
             ++L + +           +    D+SE    +++ +   +I  +     ++ +A
Sbjct: 430 GGQMLRVVVTP---NAEGGVTYLFDDLSEHMALESRYNTLIRIQGETLDGLAEAVA 482


>gi|222054921|ref|YP_002537283.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           FRC-32]
 gi|221564210|gb|ACM20182.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           FRC-32]
          Length = 909

 Score =  292 bits (748), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 96/648 (14%), Positives = 222/648 (34%), Gaps = 30/648 (4%)

Query: 179 RGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKN 238
           R F      R         + L  +   L         +  + +    +       R ++
Sbjct: 274 RLFRADEAKRSALTALQRTQALLLEAERLSHTGAWEWDLTSDIWTFSDEWQRLHGTRDRS 333

Query: 239 KVSSLTEYYAHKDDV--LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS 296
                    AH +D   +++    L         E            T K     L++ S
Sbjct: 334 LRPDELFSIAHPEDRPAIRSAFDALRRGASPYEMEHRIVRQDTGEVRTVKASGQYLRDRS 393

Query: 297 KESFEYLSHRNHP----SLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLL 351
               +                   + E      +D       +    G +FY NPS  ++
Sbjct: 394 GRVVKIYGFVQDITEQKRAEDELRKSEARLSTALDNLREGVVIATERGEVFYWNPSGWMM 453

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK--PVMLYRSDRTCIAASARLHTIQWNREN 409
             Y + ++          +    L+D   +      + R  R     +  L   + ++E 
Sbjct: 454 HGYANPEEGRRHLAEFEQIFQLSLADGRVLTLDEWPMLRIIRGEKVQNLELRLRRLDQEW 513

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469
              +++          E +    I  +  + R  +  ++    +L   +E     +A+ +
Sbjct: 514 ERVVSYSGTILQTLGEERLVYLSIC-DMTEQRRAEEALQEREERLRIFIEHAPAALAMFD 572

Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
           R+   +  +R     +     ++             P          L+ ++ +  E   
Sbjct: 573 RQMRYVHVSRRWLTDYDLEGRNLRGICHYQVF-PEIPDHWRQVHARALAGEILRADEDQF 631

Query: 530 LGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
           + S    + +   +   +          +   DI+  K  + +        ++ ++    
Sbjct: 632 VRSDGSIQWVRWEVRPWQDASGRVAGILVFSEDITHRKHAEQERERLITELQQSNAELQQ 691

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           F    SH+++ P+  +  + ++++ +  G L + +   Y ++I  + + +  ++NDLL +
Sbjct: 692 FAYVSSHDLQEPIRMVTSYVQLLQKRYQGKL-DEKAEMYISFIVEAAHRMSCLINDLLAL 750

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707
           S++  G+    F PV  +  V EA+  ++    E    I       +P ++ D   + Q+
Sbjct: 751 SRV--GRREREFMPVETELVVKEALDNLRFAMEESGARITKD---TLPMVMGDPVQLLQL 805

Query: 708 ALNILSNAIHF-----TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
             N+L NAI +     TP    + IS     N+ +   + D G+G+     E+    F +
Sbjct: 806 FQNLLGNAIKYRKKEVTPE---VHISAERKKNQWL-FGIHDNGIGIEPQYHERIFVIFQR 861

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           +    +   +GTG+GL + + +V+ + G+ ++ S P  G+      P+
Sbjct: 862 LHQ--REEYQGTGIGLAICQKIVENHGGRIWVESKPGLGSTFFFSLPI 907



 Score = 94.3 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 39/387 (10%), Positives = 100/387 (25%), Gaps = 27/387 (6%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK 146
           W  D    +   S+E  +  G     +    L  ++            D L+R  + Y  
Sbjct: 308 WEWDLTSDIWTFSDEWQRLHGTRDRSLRPDELFSIAHPEDRPAIRSAFDALRRGASPYEM 367

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                 + T     +  +   +  R+       GF  V             ++ + + S 
Sbjct: 368 EHRIVRQDTGEVRTVKASGQYLRDRSGRVVKIYGF--VQDITEQKRAEDELRKSEARLST 425

Query: 207 LHEIKKGHSSVEKEKYDIFSQQS----------PPPHLRMKNKVSSLTEYYAHKDDVLKT 256
             +  +    +  E+ ++F              P    R   +   + +       VL  
Sbjct: 426 ALDNLREGVVIATERGEVFYWNPSGWMMHGYANPEEGRRHLAEFEQIFQLSLADGRVLTL 485

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKK------QYFGTLQNNSKESFEYLSHRNHPS 310
           +++P+L        +  +     L+Q  ++          TL                  
Sbjct: 486 DEWPMLRIIRGEKVQNLELRLRRLDQEWERVVSYSGTILQTLGEERLVYLSICDMTEQRR 545

Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
                 E E      ++  P    ++       + +  +L     +         G+   
Sbjct: 546 AEEALQEREERLRIFIEHAPAALAMFDRQMRYVHVSRRWLTDYDLEG----RNLRGICHY 601

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
              P++ D+   + V         + A         +  +   + +      +       
Sbjct: 602 QVFPEIPDH--WRQVHARALAGEILRADEDQFV--RSDGSIQWVRWEVRPWQDASGRVAG 657

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCS 456
                 +    +  +++ E  + +L  
Sbjct: 658 ILVFSEDITHRKHAEQERERLITELQQ 684


>gi|37520383|ref|NP_923760.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
           7421]
 gi|35211376|dbj|BAC88755.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
           7421]
          Length = 718

 Score =  292 bits (748), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 113/727 (15%), Positives = 241/727 (33%), Gaps = 50/727 (6%)

Query: 104 KTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDL 163
             +G   F +    L +  +   +D +  + DLL     +     L P++         L
Sbjct: 22  AVLGLVEFALFRRALPE-REQAVLDDHLRLADLLASNLRYELNLVLEPVQ-KAADPRSAL 79

Query: 164 AALPIYSRNREFSG-FRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKY 222
             L    ++   +       +     + +  R +             +            
Sbjct: 80  TRLRSAEQDGALARLMSTTPLFRHLLLVDGRRRVTASAKPTLWRGRVLPASVFPTTGAAG 139

Query: 223 DIFSQQ--------SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQED 274
            ++           +P   + +           +  D      +    ++ +  +   + 
Sbjct: 140 PVYYSSVFASIYDGAPLAAIAVAYPTFERGALVSLLDLGAIESQVRSQSTADRQIWVVDR 199

Query: 275 FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI--- 331
                 +   +    G +        + L      +         +   +     PI   
Sbjct: 200 TGHTLAHSQGQLALSGAVPTELPPVRQVL-KNRRGTARYEQPVDSDRVEQLAAFAPIAGT 258

Query: 332 --PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389
                V S      A+P    L   +      +    + +  A  LS+    +P+     
Sbjct: 259 DWGVVVTSPARAALADP----LVGLQRFAAGLLFVAAAAVGFAYWLSE-RISRPLQQLSE 313

Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449
                A +A    +      + A+       +           I  E    R     +  
Sbjct: 314 QMQNQALAAPTAQVGPPMPTAPALELQVLIDSFGAMRER----IGAEAEANRRLLANLTA 369

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE--QNTPS 507
           E  +L  ++EA ++G+ + +  G + + NRA+  L   P  ++         +      +
Sbjct: 370 EKDKLELVIEAIAEGVLVYDSSGRLRTANRALWSLLDSPPGELAHWRTLRLRDALGEPVA 429

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWK 565
                    +      +      GS  + ++L +     +            + DI+  K
Sbjct: 430 PERTVFERAVREGNLASDLYRLEGSGAQPRVLQITAAPLRTGEGELLGGVAVLRDITAQK 489

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + +                + DF+A ++H++RTPL A +       + ++GPL + +   
Sbjct: 490 ESE--------------RLREDFVATLTHDLRTPLLAAVQTLGFTLDGQYGPLSDGQQQI 535

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
               I  S   +L +V  LL I + E+G+M L  EP  L   V++ I  ++  A  +   
Sbjct: 536 LLAVI-ESHRELLGLVESLLTIYRYEAGRMRLRKEPTDLAAFVAQGIEELRPLAQSRNQT 594

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +    +  +P +  D + ++++ +N++ NA+ FTP+GG++ +         V + VRDTG
Sbjct: 595 LLVEVSGPLPPVPCDRQQLRRVLVNLVDNALKFTPAGGRVHLRLEPFE-GAVRVAVRDTG 653

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
            G+   +       F Q  +       GTGLGL L + +V+A+ G+ +  S P  G+   
Sbjct: 654 RGIPPEKSVLLFVRFAQAESYAT----GTGLGLYLCRQVVEAHGGRIWAESEPGLGSTFY 709

Query: 806 IIFPLYD 812
              PL +
Sbjct: 710 FTLPLAE 716



 Score = 45.0 bits (105), Expect = 0.055,   Method: Composition-based stats.
 Identities = 28/244 (11%), Positives = 74/244 (30%), Gaps = 12/244 (4%)

Query: 90  DAHGYLKEISEELPKTIGNYA---FKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK 146
           D+ G L+  +  L   + +          +RL D                ++  N     
Sbjct: 389 DSSGRLRTANRALWSLLDSPPGELAHWRTLRLRDALGEPVAPERTVFERAVREGNLASD- 447

Query: 147 TTLWPIEGTNLYVPI-DLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
             L+ +EG+     +  + A P+ +   E  G  G  ++       +   L  R D   +
Sbjct: 448 --LYRLEGSGAQPRVLQITAAPLRTGEGELLG--GVAVLRDITAQKESERL--REDFVAT 501

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
             H+++    +  +        Q  P     +  + ++ E +     ++++    +   E
Sbjct: 502 LTHDLRTPLLAAVQTLGFTLDGQYGPLSDGQQQILLAVIESHRELLGLVESLLT-IYRYE 560

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
              +  +++   +        +    L  +  ++         P +     +   +    
Sbjct: 561 AGRMRLRKEPTDLAAFVAQGIEELRPLAQSRNQTLLVEVSGPLPPVPCDRQQLRRVLVNL 620

Query: 326 VDKC 329
           VD  
Sbjct: 621 VDNA 624


>gi|300114079|ref|YP_003760654.1| PAS/PAC sensor signal transduction histidine kinase [Nitrosococcus
           watsonii C-113]
 gi|299540016|gb|ADJ28333.1| PAS/PAC sensor signal transduction histidine kinase [Nitrosococcus
           watsonii C-113]
          Length = 371

 Score =  292 bits (748), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 75/373 (20%), Positives = 157/373 (42%), Gaps = 22/373 (5%)

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
              + +   D + I N +G I+  N    ++ GY   +++ +P  + + Q          
Sbjct: 9   FERLFDTAPDAMVISNYQGHIVLVNTMAERMLGYSRAELIGQPIEILVPQQHRDGHTLQR 68

Query: 514 TEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSCYSLT--MHDISEWKQEKN 569
            +       + +   +      K+  + S  I +  +       +T  + DI+E KQ + 
Sbjct: 69  HKYYRHPRTRPMGEGRELYAVRKDGSMFSAEISLSPMEVDGHLLITSAIRDITERKQIQK 128

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
            L    +   + ++    F    SH+++ PL  +  +++++  +    L +    E+  +
Sbjct: 129 TLEQQAQDLMRSNAELEQFAYVASHDLQEPLRMVSSYAQLLARRYRNQLDSD-ADEFIEF 187

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           +      +  ++NDLL  S++  G  +  F     +  + + +  +QL   E +  +   
Sbjct: 188 MVDGATRMQALINDLLAYSRV--GTKSKTFTTADSNWVIQQVLGSLQLVIKETQARLSVD 245

Query: 690 FANNIPRILADLRSVKQIALNILSNAIHF----TPSGGQIIISTTHTSNEEVILRVRDTG 745
               +P ++AD   + Q+  N++SNA+ F    TP   +I IS     N E+I  V D G
Sbjct: 246 ---PLPILIADEAQLAQLFQNLISNALKFRRETTP---RIHISAKAEKN-EIIFSVADNG 298

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+     E+    F ++ +  +    GTG+GL + K +V+ + G+ ++ S    GT   
Sbjct: 299 IGIEPQYTERIFLLFQRLHS--KREYPGTGIGLAICKKIVECHGGRIWVESRQGAGTTFL 356

Query: 806 IIFPLY--DTSHP 816
              PL   + S P
Sbjct: 357 FALPLEPNEDSLP 369



 Score = 51.2 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/154 (9%), Positives = 38/154 (24%), Gaps = 34/154 (22%)

Query: 316 DEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGL-------- 366
            E +       D  P    + +  G++   N     +  Y   + I     +        
Sbjct: 3   REIQLPFERLFDTAPDAMVISNYQGHIVLVNTMAERMLGYSRAELIGQPIEILVPQQHRD 62

Query: 367 ------STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
                       P+       + +   R D +  +A   L  ++ +              
Sbjct: 63  GHTLQRHKYYRHPRTRPMGEGRELYAVRKDGSMFSAEISLSPMEVDGH------------ 110

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
                  +       +  + +  ++ +E +   L
Sbjct: 111 -------LLITSAIRDITERKQIQKTLEQQAQDL 137


>gi|209520697|ref|ZP_03269447.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. H160]
 gi|209498859|gb|EDZ98964.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. H160]
          Length = 657

 Score =  292 bits (748), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 88/498 (17%), Positives = 181/498 (36%), Gaps = 24/498 (4%)

Query: 331 IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN-AIKPVMLYRS 389
                 +  +L  A     +    ++  +   +GG   L+   +LS     +      R+
Sbjct: 20  EGILRLARKSLERAGCRVAICAGVEAARERLASGGPDLLVLDYQLSGPETGLDFFRRLRA 79

Query: 390 DRTCIA------ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
           +   I        +     I+  R     +     +  +  PE + +   +         
Sbjct: 80  EGVRIPAILVTGFTDESRVIEALRSGVSDVVPKSGDYLDYLPEAVERVLSQVRLQRASDE 139

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
              +    +   ++ EA    +   +  G     ++      G P        +   +  
Sbjct: 140 ALLLRDRELHYRTLSEALPHLVLTCDAAGDCDFLSKQWRDYTGLPEHGSYGLAWLDAVHP 199

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMH 559
           +    +     + ++        +       + +     + +  +  +      +  +  
Sbjct: 200 DDREQIRRSWLKAVASR-SGDYRQEMRIRRHDGEYRWFDVRVVAMRDADGNVSKWFGSCT 258

Query: 560 DISEWKQE-------KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
           DI   ++              A++ AE+ +  K  FLA +SHE+RTPLT ++  + V++ 
Sbjct: 259 DIHSQREAIEERERLLESEQAARQAAEEANRAKDRFLAMLSHELRTPLTPVLAGASVLE- 317

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
               P    +       I R+  L   +++DLLD++++ +GK+ L  E V + E +   +
Sbjct: 318 --MIPELPEQARASVRMIRRNVELEARLIDDLLDLTRVANGKLRLSLETVDVHEVIDSVL 375

Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
            L +     K+  +          +LAD   ++Q+  N++ N+  FTP GG I + T   
Sbjct: 376 ELFRSEIQVKQQDVHVEKHATHHYVLADRARLQQMLWNLIRNSAKFTPDGGHIYVRTR-D 434

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
              +V + V DTG+G+   ++ K    F Q   +   +  G GLGL + KA+ D + G  
Sbjct: 435 ERMQVQISVEDTGIGIEPEQIGKLFNAFEQGDQNMTRQFGGLGLGLAITKALTDVHGGTV 494

Query: 793 YIFS-TPAKGTLIEIIFP 809
              S  P  G    I  P
Sbjct: 495 TAQSPGPHCGATFTITLP 512



 Score = 48.1 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/223 (9%), Positives = 55/223 (24%), Gaps = 8/223 (3%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNTWYGKT 147
           DA G    +S++     G       G+   D       +      +  +  R   +  + 
Sbjct: 165 DAAGDCDFLSKQWRDYTGLPEHGSYGLAWLDAVHPDDREQIRRSWLKAVASRSGDYRQEM 224

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
            +   +G   Y   D+  + +   +   S  + FG         +     +RL +     
Sbjct: 225 RIRRHDGE--YRWFDVRVVAMRDADGNVS--KWFGSCTDIHSQREAIEERERLLESEQAA 280

Query: 208 HEIKKGHSSVEKE--KYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
            +  +  +  +           ++P   +     V  +      +           +  E
Sbjct: 281 RQAAEEANRAKDRFLAMLSHELRTPLTPVLAGASVLEMIPELPEQARASVRMIRRNVELE 340

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
              + +  D   +   +         +        E       
Sbjct: 341 ARLIDDLLDLTRVANGKLRLSLETVDVHEVIDSVLELFRSEIQ 383


>gi|77359506|ref|YP_339081.1| aerobic respiration control sensor protein ArcB [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76874417|emb|CAI85638.1| aerobic respiration control sensor protein arcB [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 772

 Score =  292 bits (748), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 73/399 (18%), Positives = 164/399 (41%), Gaps = 23/399 (5%)

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
                +  E  + +  ++++  + M   SI++++ D     +  G+    N+   ++ G 
Sbjct: 126 RAIEELRKEIAERKKTQQELAQQSMLQRSIVDSSPDLFYYRDNNGVFAGCNKMFEEVMGK 185

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
             ++++ K           S +     ++       T++          +     +    
Sbjct: 186 TSDELIGKSAEQIFPNQFLSEVLKTDKQVEQTHQALTIDVQY---DVGGETRWFELRKLP 242

Query: 548 LPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
                           DI+  K+    L             K  F+A +SHE+RTPL  I
Sbjct: 243 FINDKGKYIGLLAFGRDITSRKEAAEALET-------AYKDKGKFIATLSHELRTPLNGI 295

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +G + ++ +       N +   + N +  S   + +I ND++D+ KI+  ++++    ++
Sbjct: 296 VGLTRMLLDTEL----NKQQRSWCNTVFSSAETLGNIFNDIIDLDKIDREQLDIATNAIN 351

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA--DLRSVKQIALNILSNAIHFTPS 721
           + + +++ ++   L A +K +         +  I A  D   ++Q+  N+++NA+ FT  
Sbjct: 352 VSDFINDVVNFAGLIAEQKDLSFDIKR-LGMLDIYAQLDPTRLRQVVWNLINNAVKFTHK 410

Query: 722 GGQII--ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
           G   +  I         + +++ DTG G+   +L +    + + P+ +     G+G+GL 
Sbjct: 411 GSVTLTCIRENRDDGPWLTMKISDTGEGIPAEQLSRIFDMYYKAPDLKGTNAIGSGIGLA 470

Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
           + KA+VDA  G   + ST  +G+   +  PL   S P +
Sbjct: 471 VTKALVDAMQGIISVNSTEGEGSCFIVEIPLILCSAPTE 509



 Score = 55.0 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 13/122 (10%), Positives = 36/122 (29%), Gaps = 5/122 (4%)

Query: 79  IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK 138
                 F +  D +G     ++   + +G  + ++IG     +     +         ++
Sbjct: 157 DSSPDLFYYR-DNNGVFAGCNKMFEEVMGKTSDELIGKSAEQIFPNQFLSEVLKTDKQVE 215

Query: 139 RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
           + +        + + G       +L  LP  +   ++ G   FG         +     +
Sbjct: 216 QTHQALTIDVQYDVGGETR--WFELRKLPFINDKGKYIGLLAFG--RDITSRKEAAEALE 271

Query: 199 RL 200
             
Sbjct: 272 TA 273


>gi|237797951|ref|ZP_04586412.1| PAS protein [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331020802|gb|EGI00859.1| PAS protein [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 595

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 89/427 (20%), Positives = 170/427 (39%), Gaps = 28/427 (6%)

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK--R 445
            + R      A         E    +T  P   A +      + GI  E +         
Sbjct: 193 IARRFGAPIEALAKAADRIGEGDYEVTL-PISSAAEMNLLTRRFGIMAEALRQHQATNVD 251

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           ++     +L ++L++  DG+ +I+R+G +   N       G+    +             
Sbjct: 252 ELLAGQQRLQAVLDSIDDGLLMIDRQGHLEHLNPVAQLQLGWDESRLGESLGAALNRPEL 311

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISE 563
              ++  L         + L         E +LL+  +              + +HD++E
Sbjct: 312 DEQLHLILRGGTLERAPEDLAIDI---DGESRLLTYSMTPVSHTKGHILGAVMVLHDVTE 368

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            +  +                +S+F+ R SHE+RTP+T  +  +  +  +R       R 
Sbjct: 369 QRAFE--------------RVRSEFVLRASHELRTPVTG-MHMAFGLLQERLHFAPESRE 413

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            +  N +      ++ ++NDLL+ S+ ++G   L   P S++  + EA +  +  A E+ 
Sbjct: 414 ADLLNTVTEEMQRLMQLINDLLNFSRYQNGLQKLKLAPCSIETLLEEAKARFEDQALERD 473

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
           I++       +PR+ AD   ++++  N+L NA+  TP  G I +       E  I+ V D
Sbjct: 474 IVLMLDIQEPLPRLHADQSQLERVLDNLLDNALRHTPPKGLIRLQ-ARRHGERAIISVED 532

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
            G G+   +  +  +PF Q+      +  G GLGL L K +V  + G+  ++S P +GT 
Sbjct: 533 NGEGIAYGQQGRIFEPFVQV----GRKKGGAGLGLALCKEIVQLHGGRMGVYSRPGQGTQ 588

Query: 804 IEIIFPL 810
             +  PL
Sbjct: 589 FYMALPL 595


>gi|254423801|ref|ZP_05037519.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Synechococcus sp. PCC 7335]
 gi|196191290|gb|EDX86254.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Synechococcus sp. PCC 7335]
          Length = 427

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 76/256 (29%), Positives = 133/256 (51%), Gaps = 11/256 (4%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E ++++ ++       ++ S  KS+FLA +SHE+RTPL AIIGFS+++   + G + N  
Sbjct: 156 ELERKQQQIYRQNLQLQEVSRLKSEFLATMSHELRTPLNAIIGFSQILLGGKKGDI-NET 214

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             +    +  +G  +L++++D+L++SKIE+G++ L    + L + V E +  +Q     K
Sbjct: 215 QRDMLGRVLSNGRHLLELISDILELSKIEAGRLELEPCKMDLVKLVEETVEELQSLITPK 274

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH---------TS 733
           ++ ++     N P I  D   V+Q+ +N+LSNAI FT  G  I +S              
Sbjct: 275 QLDLKVDITLNDPIITNDPTRVRQVLINLLSNAIKFTQHGS-ITVSIKSLTTKHSCMNGG 333

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
           +EE++L V DTG G+++ +     + F Q          GTGLGL +  ++V    G   
Sbjct: 334 SEEILLSVSDTGCGISDVDQPYIFEAFHQSDQRTNRHHAGTGLGLAITYSLVKMMCGDIT 393

Query: 794 IFSTPAKGTLIEIIFP 809
           + S   KG+   +  P
Sbjct: 394 VESQVDKGSTFRVRIP 409


>gi|85710707|ref|ZP_01041771.1| sensory transduction histidine kinase [Erythrobacter sp. NAP1]
 gi|85687885|gb|EAQ27890.1| sensory transduction histidine kinase [Erythrobacter sp. NAP1]
          Length = 609

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 86/397 (21%), Positives = 162/397 (40%), Gaps = 14/397 (3%)

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
             E + +      + D R   RK+E     L         G   ++     +  +     
Sbjct: 55  LREAVSRQRARLRNTDLRTKLRKLEEANRLLELTETTARVGHWRLDLATNEVYWSPGTFA 114

Query: 484 LFGYPVEDILRKP-FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
           + G                 ++   ++ + + +     L    E        +  +   +
Sbjct: 115 IHGIKGTTPPPLDKAIELFHEDDRDIVENAVEQSRRSGLP--FEFRARLIRADGSVRHTQ 172

Query: 543 IIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
                                D ++ +  +++L  A+  A   +  KS FLA++SHEIRT
Sbjct: 173 STALVEYGEDGAPVALFGVFCDRTDEEVMQSELRTARNEANAMAEAKSSFLAKMSHEIRT 232

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
           P+  ++GF+E++               +   I  SG  +  ++ND+LD+SKIESG+  + 
Sbjct: 233 PMNGVMGFAELLSRSDLSH----EQARHVELIRESGKALQTLLNDILDLSKIESGEFRVK 288

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIH 717
            EP ++   V   I L +  A EK I + +  ++ +P+  + D   ++Q+  N+++NAI 
Sbjct: 289 EEPANISHLVKRTIQLFEPLAREKVIGLSSQVSDTLPQFAMLDALRLRQVLSNLVANAIR 348

Query: 718 FTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
           FT  GG + +    + +  +   VRDTG G+    +E    PF Q       R  GTGLG
Sbjct: 349 FTDRGG-VSVIVEPSPSG-IAFTVRDTGTGIPEEMIEAIFDPFSQSDGGNSTRRGGTGLG 406

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           L +++ + +   G+  + ST   G+   +  PL   +
Sbjct: 407 LSISRQLAELMGGELDVISTVGLGSSFILTLPLVPAT 443


>gi|238893324|ref|YP_002918058.1| phosphate regulon sensor protein [Klebsiella pneumoniae NTUH-K2044]
 gi|330006878|ref|ZP_08305752.1| phosphate regulon sensor kinase PhoR [Klebsiella sp. MS 92-3]
 gi|238545640|dbj|BAH61991.1| positive and negative sensor protein for pho regulon [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
 gi|328535684|gb|EGF62131.1| phosphate regulon sensor kinase PhoR [Klebsiella sp. MS 92-3]
          Length = 431

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 74/427 (17%), Positives = 156/427 (36%), Gaps = 37/427 (8%)

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             +L       I     L  + W     L +         +        G+    +  + 
Sbjct: 33  WFLLAAVTGLLIWHFWNLMRLSW----WLWVDRSMTPPPGRGSWEPLLYGLHQMQMRNKK 88

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            +R++   + +  S  E+  D + +   EG I   N    ++      D   +     L 
Sbjct: 89  RRRELGSLIKRFRSGAESLPDAVVLTTEEGAIFWCNGLAQQILNLRWPDDSGQNILNLLR 148

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
                    +   +   D  + L  +   +        L I +        + +   D++
Sbjct: 149 YP------EFANYLKQRDFSKPLNLVLNNARH------LEIRVMPYSDKQ-WLMVARDVT 195

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  Q +                + +F A VSHE+RTPLT + G+ E+++ Q        +
Sbjct: 196 QMHQLEG--------------ARRNFFANVSHELRTPLTVLQGYLEMMQEQVLEGATREK 241

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                + +      +  +V  LL +S+IE+       + + +   +       Q  + EK
Sbjct: 242 A---LHTMREQTQRMEGLVKQLLTLSRIEAAPALAMNDRIDVPMMLRVVEREAQTLSQEK 298

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           +  +  +    + ++L +   ++    N++ NA++ TP G +I +S   T    +   V 
Sbjct: 299 Q-TLIFTVDEQL-KVLGNEEQLRSAISNLVYNAVNHTPPGTEIRVSWQRTPQGAL-FSVE 355

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G G+    + +  + F ++  ++  +  G+GLGL + K  V+ +  +  I ST  KGT
Sbjct: 356 DNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHAVNHHDSRLEIDSTVGKGT 415

Query: 803 LIEIIFP 809
               + P
Sbjct: 416 RFSFLLP 422


>gi|283796048|ref|ZP_06345201.1| PAS domain protein [Clostridium sp. M62/1]
 gi|291076258|gb|EFE13622.1| PAS domain protein [Clostridium sp. M62/1]
          Length = 889

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 89/379 (23%), Positives = 159/379 (41%), Gaps = 18/379 (4%)

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIIN----REGIILSTNRAVSKLFGYPVEDILRKP- 496
               +++ +      +     D I +IN     E   +S N    ++ G+  +     P 
Sbjct: 215 RQTEQLKRQNQLFELLSRNI-DNIFMINDLHHPERNYISEN--AGRILGFKPDPKKVSPT 271

Query: 497 -FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555
               ++++     +      +       T          E ++  L+           + 
Sbjct: 272 ILFEYMDEQDREKVKRVFDTVGESYWSCTFHYRHPALAGE-RIFLLQTYRIWTEGEDRFI 330

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
             + D ++    + +L  A + AEK +  KS+FL+R+SHEIRTP+  IIG   +I  Q  
Sbjct: 331 TVLTDQTQILSTQKELEAAIQQAEKANRAKSEFLSRMSHEIRTPMNGIIGM-GMIAMQNL 389

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
           G   + R  +    I+ S   +L ++ND+LD+SKIESG++ +  +       +    +++
Sbjct: 390 G--DSSRVEDCIRKINLSSRHLLTLINDVLDMSKIESGRIEIKRDVFDFRLFLESVSNVI 447

Query: 676 QLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
              A +K +     F  ++   +  D   V QI +N+LSNA+ FTP GG I++       
Sbjct: 448 SGQARDKGLNFDVIFLGDMEEELFGDALRVNQILMNLLSNALKFTPEGGSIVLRIAKMDE 507

Query: 735 E----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
           +     +   V DTG G+     EK   PF Q          GTGLGL +++   +   G
Sbjct: 508 DSTTVWLKFEVSDTGCGIEEKNYEKIFMPFEQEHEDISHVYGGTGLGLSISRRFAELMDG 567

Query: 791 KFYIFSTPAKGTLIEIIFP 809
           +  + S   KG+   +  P
Sbjct: 568 RLTVSSQVGKGSTFTLTMP 586


>gi|168701749|ref|ZP_02734026.1| multi-sensor hybrid histidine kinase [Gemmata obscuriglobus UQM 2246]
          Length = 1178

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 117/772 (15%), Positives = 237/772 (30%), Gaps = 78/772 (10%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY--GK 146
             D HG +   +    +  G  A    G  +  +    +   +       +        G+
Sbjct: 292  TDRHGLVVGWNRGAERVFGCPAEAATGSDITRIIPARYRAAHAGRLAEYRPGRPSSVVGQ 351

Query: 147  TTLW---PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                     +GT     + + A         F+      IV              R ++ 
Sbjct: 352  VVAVDAQRRDGTEFPAELTVTAWEAGGETF-FT-----SIVRDVTDSRRAAEAVARSERY 405

Query: 204  FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR---MKNKVSSLTEYYAHKDDVLKTEKYP 260
            +  L E       V     +     +P         + +    +      D         
Sbjct: 406  YRTLFEHAHDPVLVFDPDGERVLDVNPAACRAYGLPREEFVGRSLADLSADPAGGLVHVA 465

Query: 261  LLTSEESSLPEQEDFHTINLNQYTK-----------KQYFGTLQNNSKESFEYLSHRNHP 309
              T        +      +  +              +    ++  +  E     + R   
Sbjct: 466  AATDGRDVYQFETVQFRRDGARMELEVNASVVEFDGRPAVLSVNRDVTERNRAEARRAER 525

Query: 310  SLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKS---VDDIEIAGGL 366
              +A    G           P          +     + + +        V ++  + GL
Sbjct: 526  ERAAAMRAGVAAAVARGGDKPEALRACCAAVVDELGAALVRVWVLPEGGTVLELRASAGL 585

Query: 367  STLLDAPKLSDNNAIKPVMLYRSDRTCIAASA--------RLHTIQWNR----------- 407
            +   D            V     +R      A            ++              
Sbjct: 586  TASTDGLYARIPVGRLLVGRIAEERKPYWTDAVADDPLTGEPERVRSAGLVGFAGYPLLV 645

Query: 408  ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
            E  L      F +           G   + +   + +R+ E ++      L A   G+AI
Sbjct: 646  EGRLVGVLATFARTALGAPAREALGGAADLIAQFVERRRAEEQMRLRDRALAAFPQGVAI 705

Query: 468  IN---REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
             +    +  ++  N    ++ GYP  + L +       + T       +   L       
Sbjct: 706  ADATRPDHPLVYVNPGFERMTGYPAAEALGRNCRFLQGKGTDPSAVAAVRAALRDGRAAL 765

Query: 525  LEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEK 580
            +    L   K+ K     + +  +   +     +     D+S  KQ + +L  ++K+   
Sbjct: 766  V--ELLNYRKDGKPFWNALTVAPVRDGAGALTHFVAIQTDVSPLKQLEAQLLQSQKM--- 820

Query: 581  ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
                       V+H+    LT I+GF  ++ ++  G     R       I ++G     +
Sbjct: 821  --EAVGRLAGGVAHDFNNLLTVILGFGGMLGDRLTG-----RERTLVGEIVKAGERAAGL 873

Query: 641  VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILAD 700
               LL  S+ E     +   P+SL+  V+EA  L++     + I + T     + +++AD
Sbjct: 874  TRQLLAFSRQE----VIQPRPLSLNVVVAEAERLLRRLI-GEDIELTTVADPELAQVVAD 928

Query: 701  LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EVILRVRDTGVGMTNYELEKAM 757
                +Q+ +N++ NA    P+GG++ + T++   +    V+L V DTG GM++    +  
Sbjct: 929  PGQAEQVLMNLVVNARDAMPTGGRLTVETSNVERDGARYVLLSVTDTGCGMSDEVKARLF 988

Query: 758  KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            +PF     +    G GTGLGL +   +V+   G   + S    GT  ++ FP
Sbjct: 989  EPFFTTKGA----GRGTGLGLAVVHGVVEQAGGHIEVDSVIGHGTTFQVYFP 1036



 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 32/329 (9%), Positives = 86/329 (26%), Gaps = 23/329 (6%)

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
               L            + T+        + F        E       R    L A  + 
Sbjct: 89  PAYRLAGLVKLATAVVSWATVLSLLPVIPKAFAMRSPEELEREVAERRRVEAELRASEER 148

Query: 318 GENLTPETVDKCPIPFFVYSHGNLF------YANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
                  ++D       V     L         NP+   L      + +         ++
Sbjct: 149 FRAAMNGSLDAMFFLTAVRDPDGLITDFTFDDVNPAGEHLVARTRAETVGQRLCEMLPVN 208

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
                 +   + V+                        S  +        +         
Sbjct: 209 RTGGFCDRYARVVVTREPLEEEFPFQT-------PEGVSCWLQHQVVPLGDG------VV 255

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
               +    +  + ++     +L S++E+ +D I   +R G+++  NR   ++FG P E 
Sbjct: 256 ITSRDITARKQAELELRASEERLRSVVESATDAIITTDRHGLVVGWNRGAERVFGCPAEA 315

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI--TLGSTKEEKLLSLRIIIKKLP 549
                 T  +     +     L E         + ++       ++       + +    
Sbjct: 316 ATGSDITRIIPARYRAAHAGRLAEYRPGRPSSVVGQVVAVDAQRRDGTEFPAELTVTAWE 375

Query: 550 FSSC--YSLTMHDISEWKQEKNKLSHAKK 576
                 ++  + D+++ ++    ++ +++
Sbjct: 376 AGGETFFTSIVRDVTDSRRAAEAVARSER 404



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/189 (13%), Positives = 58/189 (30%), Gaps = 13/189 (6%)

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII- 468
           S A          +         +E E  + R  + ++     +  + +  + D +  + 
Sbjct: 105 SWATVLSLLPVIPKAFAMRSPEELEREVAERRRVEAELRASEERFRAAMNGSLDAMFFLT 164

Query: 469 ---NREGIILS-----TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520
              + +G+I        N A   L      + + +     L  N           ++   
Sbjct: 165 AVRDPDGLITDFTFDDVNPAGEHLVARTRAETVGQRLCEMLPVNRTGGFCDRYARVVVTR 224

Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
               LE+     T E     L+  +  L       +T  DI+  KQ + +L  +++    
Sbjct: 225 EP--LEEEFPFQTPEGVSCWLQHQVVPLGD--GVVITSRDITARKQAELELRASEERLRS 280

Query: 581 ESSHKSDFL 589
                +D +
Sbjct: 281 VVESATDAI 289


>gi|157374424|ref|YP_001473024.1| hybrid sensory histidine kinase BarA [Shewanella sediminis HAW-EB3]
 gi|157316798|gb|ABV35896.1| Histidine kinase [Shewanella sediminis HAW-EB3]
          Length = 937

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 90/251 (35%), Positives = 139/251 (55%), Gaps = 8/251 (3%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  AKK A + S  KS+FLA +SHE+RTPL  +IGF++ +         +    +Y N 
Sbjct: 287 ELDLAKKRALEASRIKSEFLANMSHELRTPLNGVIGFAKQLLKTPL----HSSQQDYINT 342

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I++S   +L I+ND+LD SK+E+GKM L   P +L E + + I+L+   A EK I +   
Sbjct: 343 IEKSATTLLGIINDILDFSKLEAGKMVLENMPFALREMLDDTITLLSNSAREKDIELVVD 402

Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILR--VRDTG 745
             +++P  +  D   + QI  N++ NAI FT  G   + +  T ++NE+V LR  V DTG
Sbjct: 403 IESDVPEDLSGDAMRISQIMTNLVGNAIKFTDQGSVHLKLQLTESNNEQVHLRCEVTDTG 462

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+ + + E   + FGQ  +S   R  GTGLGL + K +V+   G+    S   KG+   
Sbjct: 463 IGIDDSQKEVLFQAFGQADSSISRRFGGTGLGLIITKRLVNRMGGQIGCISKLDKGSTFW 522

Query: 806 IIFPLYDTSHP 816
              PL  + +P
Sbjct: 523 FTLPLQTSQYP 533


>gi|119717079|ref|YP_924044.1| PAS/PAC sensor signal transduction histidine kinase [Nocardioides
           sp. JS614]
 gi|119537740|gb|ABL82357.1| PAS/PAC sensor signal transduction histidine kinase [Nocardioides
           sp. JS614]
          Length = 712

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 109/734 (14%), Positives = 222/734 (30%), Gaps = 63/734 (8%)

Query: 110 AFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIY 169
                G    +V +       +     L   +            G  +     +    + 
Sbjct: 2   EADAAGREPDEVVEP------DAAAGRLVALDPCRATAVRAGRVGAAVQHAGVVDHAALR 55

Query: 170 SRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS 229
             +   +      +   +         G+              G   V   + +      
Sbjct: 56  DHSAGGADQPDPVLPLRDHDPPALARGGRDRTPVAGTGLPAALGVQLVPGPRVEPTGLLQ 115

Query: 230 PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE-----------ESSLPEQEDFHTI 278
           P P L   ++ +      A +   L  +    L                 L   ++    
Sbjct: 116 PLPRLEAVHRGAGPGVELAVRGTGLTAQAVEPLLGLDHPALGGVGRCGRDLGGGDEAERG 175

Query: 279 NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS---------AYFDEGENLTPETVDKC 329
                  + +   +   +  + +        +           A   E E+L    +   
Sbjct: 176 QQRDEPGQTHHAPILGLAGPAAKAAPFVYGEAPRFGPRGGVRVADRAETEDLWRLMLQHS 235

Query: 330 PIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388
           PI   V    G L  AN +   +  Y   + +   G           +D      V+   
Sbjct: 236 PIGMAVVDPTGRLLMANRALCEMLGYSQAELL-QRGFQDLTHPEDLDADLALFHQVLA-- 292

Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
                 +   R   +       +          +             +  + R N+ ++E
Sbjct: 293 --GELDSYRIRKRYLHAEGH-VVWGDLSVAVVRDPDGTARHFISQVLDVTEQRANEERLE 349

Query: 449 I-------EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL----RKPF 497
                   E   L +I +  + G+ +I  +G    TN+  +     P  +       +  
Sbjct: 350 AVTAEVERERQMLAAIFDTVNVGLLLIGPDGRYERTNKRHADTLRRPFPEGHEGEAGQLG 409

Query: 498 TVFLEQNTPSVMNHYLT--EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555
            V+       +    +        +                   S      + P      
Sbjct: 410 HVYFPDGKTLMSREQMPSYRAAQGEEFDDYNYWVGADPATWSAFSTSARQVRGPSGERLG 469

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
             +                     +    K +F+A VSHE+RTPLT+++G  E++  +  
Sbjct: 470 AVL------------AYQEVTDLMRAIQVKDEFVASVSHELRTPLTSVLGHLELLGERDD 517

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
                         + R+   +  +++DLL I +I  G + L+  PV L   V EA+  V
Sbjct: 518 ---LTDEVAAQLRVVQRNAARLQALLSDLLLIGQIADGTLELNSGPVDLRTVVDEAVEAV 574

Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
           +  A++  + IR      +P + AD + ++Q+  N+LSNAI +  +G  + +      + 
Sbjct: 575 RAVADQSDVSIRVEAPGTLPAV-ADGQRLRQVLDNLLSNAIKYGRAGCSVTVELRRADDG 633

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            V L V DTG+G+ +++ E     F +   + +    GTGLGL +  ++V A+ G   + 
Sbjct: 634 -VELLVADTGMGIADHDREHVFGRFFRGGEAVRQHLPGTGLGLSIVASIVAAHGGTVTVE 692

Query: 796 STPAKGTLIEIIFP 809
           S   +G+   +  P
Sbjct: 693 SELGRGSTFRVALP 706



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/382 (9%), Positives = 88/382 (23%), Gaps = 23/382 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D  G L   +  L + +G    +++     D++    +D +  +   +        +  
Sbjct: 242 VDPTGRLLMANRALCEMLGYSQAELLQRGFQDLTHPEDLDADLALFHQVLAGELDSYRIR 301

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
              +      V  DL+   +   +     F     V             + +  +     
Sbjct: 302 KRYLHAEGHVVWGDLSVAVVRDPDGTARHF--ISQVLDVTEQRANEERLEAVTAEVERER 359

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           ++             +                           D L+         E   
Sbjct: 360 QMLAAIFDTVNVGLLLIGPD------------GRYERTNKRHADTLRRPFPEGHEGEAGQ 407

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKE---SFEYLSHRNHPSLSAYFDEGENLTPET 325
           L          L    +   +   Q    +    +         + S    +    + E 
Sbjct: 408 LGHVYFPDGKTLMSREQMPSYRAAQGEEFDDYNYWVGADPATWSAFSTSARQVRGPSGER 467

Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
           +        V            F+    ++    +    G   LL       +     + 
Sbjct: 468 LGAVLAYQEVTDLMRAIQVKDEFVASVSHELRTPLTSVLGHLELLGERDDLTDEVAAQLR 527

Query: 386 LYRSD-RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
           + + +     A  + L  I    + +L +   P +      E +       +  D  I  
Sbjct: 528 VVQRNAARLQALLSDLLLIGQIADGTLELNSGPVDLRTVVDEAVEAVRAVADQSDVSIRV 587

Query: 445 RK-----MEIEVMQLCSILEAT 461
                     +  +L  +L+  
Sbjct: 588 EAPGTLPAVADGQRLRQVLDNL 609


>gi|146281817|ref|YP_001171970.1| sensor/response regulator hybrid protein [Pseudomonas stutzeri
           A1501]
 gi|145570022|gb|ABP79128.1| probable sensor/response regulator hybrid protein [Pseudomonas
           stutzeri A1501]
          Length = 914

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 82/261 (31%), Positives = 138/261 (52%), Gaps = 11/261 (4%)

Query: 567 EKNKLSHAKKIAEKE---SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            K +   +++ AE+    +  KS FLA++SHEIRTPL  ++G  ++++        +   
Sbjct: 388 LKEEGYRSREAAERAASENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRETPL----DRSQ 443

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
             Y + I  SGN ++ ++ND+LD ++I SGK++L      L+  +SE I L    A EK+
Sbjct: 444 QFYLDTISSSGNSLMAVINDILDYARIGSGKLSLEDIDFDLEILISETIRLFTAQALEKQ 503

Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQI-IISTTHTSNEE--VIL 739
           + +       +P RI  D   +KQI +N+LSNA+ FT  G  +  +S   T + E  ++ 
Sbjct: 504 LSLHVGLEPGVPRRIRGDPTRLKQILMNLLSNALKFTEHGHVVLEVSCRRTQDGEPRLVF 563

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V D+G+GM    L +  + F Q  +S   R  G+GLGL ++K +V+   G   + STP 
Sbjct: 564 CVSDSGIGMRQEVLAQLFESFAQGDSSTTRRYGGSGLGLAISKELVEMMNGHIEVQSTPG 623

Query: 800 KGTLIEIIFPLYDTSHPHDCI 820
           +G+      PL+  +   D +
Sbjct: 624 RGSRFCFEIPLHAATDGEDSL 644


>gi|20808918|ref|NP_624089.1| sensory transduction histidine kinase [Thermoanaerobacter
           tengcongensis MB4]
 gi|20517579|gb|AAM25693.1| Sensory transduction histidine kinases [Thermoanaerobacter
           tengcongensis MB4]
          Length = 469

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 72/314 (22%), Positives = 147/314 (46%), Gaps = 10/314 (3%)

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR-IIIKKLPFSSCYSLTMH 559
           LE+   +V+N +L  +LS  +   +  I +  T       L+ + +     +        
Sbjct: 159 LEEMNRTVLNIFLLMLLSGGMAFVVSFILISYTSNRISEPLKKMSLAAREIAKGNFSARV 218

Query: 560 DISEWKQ---EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
           D  E  +        +   +   +    + +F+A VSHE+R+P+T+I G+ + I +   G
Sbjct: 219 DHFEEDEIGDLARSFNVMARELAQLEDMRKEFVANVSHELRSPITSIQGYIDGILD---G 275

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
            +   +  +Y   +      +  ++NDLL+++K+ESG+  L+     ++E +   I   +
Sbjct: 276 TIPKEKTYDYLKVVQEETRRMSRLINDLLEMTKLESGEFPLNRTEFDINELIRICIIKFE 335

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
               EK + ++  F  +   + AD   ++Q+  N++ NAI F+   G I + T     ++
Sbjct: 336 KRIVEKDLTVKVDFEEDRRFVFADRDKIEQVLTNLIDNAIKFSKPKGIIHLFTEVK-GDK 394

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           V + V+D G+G++  +LE   + F +   S+    +G GLGL + K +++A+  + +  S
Sbjct: 395 VFITVKDNGIGISPEDLEHIWERFYKADKSRGK--DGAGLGLYIVKKIIEAHKEEIWAES 452

Query: 797 TPAKGTLIEIIFPL 810
              KGT      P+
Sbjct: 453 ELKKGTSFTFTLPI 466


>gi|320353817|ref|YP_004195156.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
           2032]
 gi|320122319|gb|ADW17865.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
           2032]
          Length = 1002

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 84/525 (16%), Positives = 170/525 (32%), Gaps = 35/525 (6%)

Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
                 +       T+             G +   NP    LT +   + +         
Sbjct: 357 EEFEHRQTRGEIRATLYSIGEGVISTDAAGLITRMNPVAEQLTGWHEAEALGKPLTQVYR 416

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
           +   +  +  A  PV     ++  +  S     I  +      +        N+  +   
Sbjct: 417 VIDEETGEPVAS-PVDRVLREQAIVRMSHHTLLIARDDSR-RPIVDSGAPIRNEAGQITG 474

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
              I  +    R  ++       +   +LE+ SD I   +RE  +   +     + GY  
Sbjct: 475 VVMIIRDQSKRRAMEKARAESAKRYADLLESISDLIWQTDREHRLSYASPRCLDMLGYSP 534

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
            + +   +   L  N  S     L E ++     + +      T++ + + L      + 
Sbjct: 535 RECVGLSWLDLLSPNNDSEATRTLVETMAALQPCS-QLCLTCRTRDGREVILESNATPVF 593

Query: 550 FSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSH--KSDFLARVSHEIRTPLTAI 603
                         DI+E K+ +      +    +             V+H+    LT I
Sbjct: 594 DQKGRFAGYRGVSRDITERKRTEEAQKRLESQLLQSQKMEVVGRLAGGVAHDFNNMLTVI 653

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
             + E+  +       +P Y      + ++     D+   LL  ++    K  +  + + 
Sbjct: 654 GSYVEMTLSDL--TEQHPLYRRLFE-VHKAVQHSADLTRQLLAFAR----KQVIAPKVLD 706

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
           L+E ++ A+ ++Q    E  I ++     ++  +  D   + Q+  N+  NA       G
Sbjct: 707 LNETITAALKMLQRLIGEH-IDLQWQPGASLWPVRMDSTQIGQVLANLAVNARDAISGAG 765

Query: 724 QIIISTT-------------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
            + I T               +  + V++ V+D G GM      +  +PF          
Sbjct: 766 HLHIQTANVVVPADDAPCLELSPGDYVLISVKDDGCGMDQETQSRIFEPFFTTK----EN 821

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
           G GTGLGL     +V  N G   + S P +GT+  +  P  + S 
Sbjct: 822 GCGTGLGLATVYGIVKQNDGAITVASAPGQGTVFHVYLPRAEFSA 866



 Score = 78.5 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 18/141 (12%), Positives = 42/141 (29%), Gaps = 4/141 (2%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI-DPNNHIGDLLKRQNTW 143
             W  D    L   S      +G    + +G+   D+    +  +    + + +      
Sbjct: 509 LIWQTDREHRLSYASPRCLDMLGYSPRECVGLSWLDLLSPNNDSEATRTLVETMAALQPC 568

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                          V ++  A P++ +   F+G+RG  +              KRL+ +
Sbjct: 569 SQLCLTCRTR-DGREVILESNATPVFDQKGRFAGYRG--VSRDITERKRTEEAQKRLESQ 625

Query: 204 FSHLHEIKKGHSSVEKEKYDI 224
                +++          +D 
Sbjct: 626 LLQSQKMEVVGRLAGGVAHDF 646



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/246 (10%), Positives = 72/246 (29%), Gaps = 11/246 (4%)

Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR----TCIAASARLHTIQWNRENS 410
            +   ++ A G + L           +  +           T + A      +++     
Sbjct: 265 TASPAVQAALGQTGLFRGLDYRGVEVLADLSAIPETGWFMVTKMDALHARAELRFRGVCI 324

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470
           L +  +              +  +         + +      ++ + L +  +G+   + 
Sbjct: 325 LLLVVMGAIMTGILVRLTTLSRQKSLTDALLNEEFEHRQTRGEIRATLYSIGEGVISTDA 384

Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLE---QNTPSVMNHYLTEILSLDLRQTLEK 527
            G+I   N    +L G+   + L KP T       + T   +   +  +L       +  
Sbjct: 385 AGLITRMNPVAEQLTGWHEAEALGKPLTQVYRVIDEETGEPVASPVDRVLREQAIVRMSH 444

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
            TL   +++    +      +   +       + + D S+ +  +   + + K       
Sbjct: 445 HTLLIARDDSRRPIVDSGAPIRNEAGQITGVVMIIRDQSKRRAMEKARAESAKRYADLLE 504

Query: 584 HKSDFL 589
             SD +
Sbjct: 505 SISDLI 510



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 26/251 (10%), Positives = 68/251 (27%), Gaps = 11/251 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG----DLLKRQNTWY 144
            DA G +  ++    +  G +  + +G  L  V  ++  +    +      +L+ Q    
Sbjct: 382 TDAAGLITRMNPVAEQLTGWHEAEALGKPLTQVYRVIDEETGEPVASPVDRVLREQAIVR 441

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
                  I   +   PI  +  PI +   + +G     I+                 K++
Sbjct: 442 MSHHTLLIARDDSRRPIVDSGAPIRNEAGQITGV--VMIIRDQSKRRAMEKARAESAKRY 499

Query: 205 SHLHEIKKGHSSVEKEKYDI--FSQQSPPPHLRMKNK---VSSLTEYYAHKDDVLKTEKY 259
           + L E           ++ +   S +          +   +S L     + D        
Sbjct: 500 ADLLESISDLIWQTDREHRLSYASPRCLDMLGYSPRECVGLSWLDLLSPNNDSEATRTLV 559

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
             + + +          T +  +   +     + +       Y       +     +E +
Sbjct: 560 ETMAALQPCSQLCLTCRTRDGREVILESNATPVFDQKGRFAGYRGVSRDITERKRTEEAQ 619

Query: 320 NLTPETVDKCP 330
                 + +  
Sbjct: 620 KRLESQLLQSQ 630


>gi|262404766|ref|ZP_06081321.1| BarA sensory histidine kinase [Vibrio sp. RC586]
 gi|262349798|gb|EEY98936.1| BarA sensory histidine kinase [Vibrio sp. RC586]
          Length = 927

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 86/341 (25%), Positives = 156/341 (45%), Gaps = 19/341 (5%)

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
           F + +   + +P T        ++++      L + +   +        K    +++ + 
Sbjct: 192 FAFRLMHDVTRPITHM-----KNMVDRIRRGHLDVRIEGKMHGELDALKKGINAMAVSLS 246

Query: 545 IKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
              +           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTPL
Sbjct: 247 EYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPL 306

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
             +IGF+  +   +          +Y   I++S N +L I+ND+LD SK+E+GK+ L   
Sbjct: 307 NGVIGFTRQMLKTQLTN----SQTDYLQTIEKSANNLLTIINDILDFSKLEAGKLALENI 362

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFT 719
           P    + + E ++L    A+EK + I       IPR ++ D   ++Q+  N++ N+I FT
Sbjct: 363 PFEFQDILEEVVNLQATSAHEKGLEITLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFT 422

Query: 720 PSGGQIIISTTHT----SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
             G  I +S           ++   VRDTG+G++  +  +  + F Q   S   R  GTG
Sbjct: 423 ERG-NIDVSVEMRSLRDDVIDLQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTG 481

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           LGL + + +V    G+  + S   +G+       L+ T  P
Sbjct: 482 LGLVITQKLVSHMGGEISLTSRLHQGSTFWFTLRLHTTELP 522


>gi|302036175|ref|YP_003796497.1| putative hybrid histidine kinase [Candidatus Nitrospira defluvii]
 gi|300604239|emb|CBK40571.1| putative Hybrid histidine kinase [Candidatus Nitrospira defluvii]
          Length = 415

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 84/365 (23%), Positives = 148/365 (40%), Gaps = 39/365 (10%)

Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL------EKITLGSTK 534
             +LF     D++     V +           L  +   +    L      +  ++    
Sbjct: 45  ACELFQKCPPDVVL--LDVMMPGMDGFATCAALRRLPGGEHTPILIMTGLDDFESITKAY 102

Query: 535 EEKLLSLRI---IIKKLPFSSCYSLTMHDI-SEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
           +       +       L     Y +    +  E ++ +  L+ A+  A + +  KS+FLA
Sbjct: 103 DAGATDFIVKPLNAMLLTHRIRYMVRADQVLQELRESQATLTQARDAAIEGARLKSEFLA 162

Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650
            +SHEIRTP+  ++G ++ + +           ++ A  I  SG+ +L I+ND+LD SKI
Sbjct: 163 TMSHEIRTPMNGVLGMTDWLLDTPLTA----EQLDCAQTIRSSGDALLVIINDILDFSKI 218

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIAL 709
           ESGK++L      L   +   ++L    A  K +L+ +  A ++P  +  D   ++QI  
Sbjct: 219 ESGKLSLELLDFDLSTFLDRVMALFGERAQRKGLLLTSRIAEDVPGSLCGDPARLQQILS 278

Query: 710 NILSNAIHFTPSGGQ-IIISTTHTSNE---------------------EVILRVRDTGVG 747
           N+L+NAI F+  G   +++       E                      +   V D G+G
Sbjct: 279 NLLANAIKFSEHGSVSVLVELDQRPAEQGLEFPATRYGEPSAQQEQVTHIRFSVSDNGIG 338

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           +      K  +PF Q   S   +  GTGLGL + K +V+   G     S P  G++    
Sbjct: 339 IEPSAFSKLFQPFVQADGSTTRKYGGTGLGLAICKQLVELMGGHIGAESEPGSGSIFRFT 398

Query: 808 FPLYD 812
            PL  
Sbjct: 399 VPLQQ 403


>gi|262274565|ref|ZP_06052376.1| sensory box histidine kinase/response regulator [Grimontia hollisae
           CIP 101886]
 gi|262221128|gb|EEY72442.1| sensory box histidine kinase/response regulator [Grimontia hollisae
           CIP 101886]
          Length = 834

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 79/256 (30%), Positives = 126/256 (49%), Gaps = 11/256 (4%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           +S + Q    L  A++ A K +  K  FLA +SHEIRTP+  I+G + +++++       
Sbjct: 432 VSAFNQLSASLVDARERAIKAARAKQLFLANISHEIRTPMNGILGAASLMQDEPMSA--- 488

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
            R  EY + I  S   ++ ++NDLLD SK+ES  + L   P  L++       L+    N
Sbjct: 489 -RQAEYLSVIAHSSRGLMALINDLLDFSKMESNHLKLEEAPFDLEKLGKYVHDLMLPTIN 547

Query: 681 EK-RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII--ISTTHTSNEE 736
            K ++     + +  PR  L D   ++Q+ LN++SNA+ FT +G  +   IS        
Sbjct: 548 NKPQLAFEFRYEDTCPRYFLGDAHRIEQVMLNLVSNALKFTETG-VVSFSISMRKEQGGY 606

Query: 737 --VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
             V LRV DTGVG+   +       F Q   S   +  G+GLGL + K +VD   G   +
Sbjct: 607 TGVCLRVSDTGVGIAPEKHNMIFDEFQQADTSTTRQFGGSGLGLAITKQLVDLMGGTISV 666

Query: 795 FSTPAKGTLIEIIFPL 810
            S   +G++  +  PL
Sbjct: 667 ESELGRGSVFNVFLPL 682


>gi|170019467|ref|YP_001724421.1| sensory histidine kinase AtoS [Escherichia coli ATCC 8739]
 gi|169754395|gb|ACA77094.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Escherichia coli ATCC 8739]
          Length = 608

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 83/371 (22%), Positives = 171/371 (46%), Gaps = 28/371 (7%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            + +         I+E  +DG+  I+R+G + + N A   + GY   +++ +P+++    
Sbjct: 254 AQALRETRTLNDLIIENAADGVIAIDRQGDVTTMNPAAEVITGYQRHELVGQPYSMLF-- 311

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMH 559
              +     + + L                ++ + + L +   ++  +        +   
Sbjct: 312 -DNTQFYSPVLDTLEHGTEHV-ALEISFPGRD-RTIELSVTTSRIHNTHGEMIGALVIFS 368

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           D++  K+ + +++ A+++A        + +A V+HE+R PLTAI G+ ++++ Q   P+ 
Sbjct: 369 DLTARKETQRRMAQAERLAT-----LGELMAGVAHEVRNPLTAIRGYVQILRQQTSDPI- 422

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
              + EY + + +  + +  ++  LL+ S+    +    ++ VSL+  V E + LVQ   
Sbjct: 423 ---HQEYLSVVLKEIDSINKVIQQLLEFSRPRHSQ----WQQVSLNALVEETLVLVQTAG 475

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
            + R+   +   N +  I AD   +KQ+ LNIL NA+    + G+I I T   S+ +  +
Sbjct: 476 VQARVDFISELDNELSPINADRELLKQVLLNILINAVQAISARGKIRIQTWQYSDSQQAI 535

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            + D G G+     +K   PF     S      GTGLGL L++ +++A+ G   + S P 
Sbjct: 536 SIEDNGCGIDLSLQKKIFDPFFTTKAS------GTGLGLALSQRIINAHQGDIRVASLPG 589

Query: 800 KGTLIEIIFPL 810
            G    +I P+
Sbjct: 590 YGATFTLILPI 600



 Score = 40.8 bits (94), Expect = 0.89,   Method: Composition-based stats.
 Identities = 12/117 (10%), Positives = 37/117 (31%), Gaps = 6/117 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G +  ++       G    +++G     +    +    + + D L+          
Sbjct: 278 IDRQGDVTTMNPAAEVITGYQRHELVGQPYSMLF--DNTQFYSPVLDTLEHGTEHVALEI 335

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
            +P     + + +  +   I++ + E  G     I        + +    + ++  +
Sbjct: 336 SFPGRDRTIELSVTTS--RIHNTHGEMIGA--LVIFSDLTARKETQRRMAQAERLAT 388


>gi|149187870|ref|ZP_01866166.1| sensory transduction protein kinase [Vibrio shilonii AK1]
 gi|148838266|gb|EDL55207.1| sensory transduction protein kinase [Vibrio shilonii AK1]
          Length = 916

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 113/540 (20%), Positives = 214/540 (39%), Gaps = 63/540 (11%)

Query: 335 VYSHGNLFYANPSFLLLTKYKSV-------DDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
           +YS   L  AN +   L   +S        D++E     +  L    ++   + K     
Sbjct: 99  IYSADALSMANTTLEELRDAQSELQSVTEMDELEEWSSWTNDLINQLIAQLESTKVDTGT 158

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK--- 444
               + + A   L  I+        +  I   + +    +      E         +   
Sbjct: 159 IKLESHLNALFTLEWIRLWATEENWLIHIDIVEGHAEEHHDSHAAHEQLSTLFERQQYLI 218

Query: 445 ---------------------------------RKMEIEVMQLCSILEATSDGIAIINRE 471
                                            R ++    +L +  +  + GIA +++ 
Sbjct: 219 ERFLNISADASQVSLLLKTFSDESFVESILFRDRVLDESQPELAT--QEITSGIAALDKR 276

Query: 472 GIILS-----TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
             ++       N  ++      ++D+ ++ +       +       L+  ++  +   L 
Sbjct: 277 LKLIQQATDQINEQLTNEMAQSIKDLEQRLWLTIGLTVSIMAALFILSINITRRIIFFLN 336

Query: 527 KITLGSTK---EEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
                  +   +E+  +L     +  FS         I E ++ ++++  AK+ AE+ + 
Sbjct: 337 NTLETFERLENQEESDTLASTEGQDEFSHFGKKMNKLIHERRENEHRMLAAKEEAERANV 396

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
            KS FLA +SHEIRTPL  IIG S ++      P+      +Y N ID S   +L ++ND
Sbjct: 397 AKSSFLANMSHEIRTPLNGIIGMSGILSESNLDPI----QRDYLNTIDTSSQTLLILIND 452

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLR 702
           +LDISKIESG + +     +L E   + I++V   A EK + ++  F+  +P  ++ D  
Sbjct: 453 ILDISKIESGNLLISLHSSNLREIAYDTIAIVMSKAKEKDLQLQIRFSPQMPHMLIIDDH 512

Query: 703 SVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKP 759
            ++QI +N++SNA+ FT  G    +I ++        +   + DTG+G+   + +   KP
Sbjct: 513 RLRQILMNLMSNAVKFTNKGHVRMEINVTEIDEQRCSIYFAIVDTGIGIDKDKQDSIFKP 572

Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF--PLYDTSHPH 817
           F Q  +S   +  GTGLGL ++  +V+   G   I S   KG+         +   + PH
Sbjct: 573 FTQEDSSVTRQYGGTGLGLAISSQLVELMGGNIEIDSEKGKGSRFFFTIESSINQATSPH 632


>gi|189190456|ref|XP_001931567.1| two-component system protein A [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187973173|gb|EDU40672.1| two-component system protein A [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 678

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 95/495 (19%), Positives = 195/495 (39%), Gaps = 25/495 (5%)

Query: 324 ETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD-NNAI 381
           + +   P+P   + +   + + + S++ ++     + +              +    +A 
Sbjct: 32  DLIRYTPVPTVILDASLFVRHVSDSYVNISGAGDCNSLVGRHADDVFDGNVTIPAFTSAC 91

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
             V   ++             I   +  +  +  +P  +         +     E+   +
Sbjct: 92  LTVRAAKATGKSQH-----RKIVTGKGAAWNLRAVPILRYGNLRCIQMEFLDVTEEHQRQ 146

Query: 442 INKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +   +   +   +  ++    D  I +++  G + + N       GY   +I+ K F+ F
Sbjct: 147 LEFEERSYQNETVQLLVATIRDYAIFMLDPGGHVATWNAGAQASKGYTPAEIIGKHFSTF 206

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLT 557
             Q           E+         E       K+       ++I  +   +    YS  
Sbjct: 207 YSQEDRVRGKPE-RELKDALRDGRCEDEGWRLRKDGSRFWANVVITPVYKDNILLGYSKV 265

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
             D++E ++ +N L       E+ S  KS+FLA +SHEIRTP+  ++             
Sbjct: 266 TRDLTERRKAENSLI---AAYEEASKLKSEFLANMSHEIRTPMHGMLSA----LTLLLDT 318

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
             +    E A  I  SG+++L +++D+LD SK+ SG  ++  + +S+ E +     + Q 
Sbjct: 319 KLDDNQCELARIIQESGDVLLQLIDDILDFSKLASGSFSISQDIISVREIIQSVFRVHQA 378

Query: 678 YANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSG-GQIIISTTHTSNE 735
             N+  + + +   + +PR    D    +QI  N+LSNA  FT +G  +I+    +  +E
Sbjct: 379 -CNKPEVKLESFLDDKLPRSAEGDPLRYRQIIQNLLSNATKFTENGYVRIVARLHNEDHE 437

Query: 736 EVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
           +  +   V D+G+G+          PF Q  NS   R +GTGLGL + K++ +   G+  
Sbjct: 438 QFTILTEVIDSGIGVPASGAHTLFTPFTQFDNSATKRYKGTGLGLNICKSLAELMGGQIG 497

Query: 794 IFSTP-AKGTLIEII 807
               P  +G++    
Sbjct: 498 FRPNPEGRGSIFWFT 512



 Score = 45.0 bits (105), Expect = 0.054,   Method: Composition-based stats.
 Identities = 16/136 (11%), Positives = 40/136 (29%), Gaps = 9/136 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI---DPNNHIGDLLKRQNT 142
            + +D  G++   +     + G    ++IG                P   + D L+    
Sbjct: 171 IFMLDPGGHVATWNAGAQASKGYTPAEIIGKHFSTFYSQEDRVRGKPERELKDALRDGRC 230

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
              +      +G+  +  + +   P+Y ++    G+    +                  +
Sbjct: 231 -EDEGWRLRKDGSRFWANVVI--TPVY-KDNILLGYSK--VTRDLTERRKAENSLIAAYE 284

Query: 203 KFSHLHEIKKGHSSVE 218
           + S L      + S E
Sbjct: 285 EASKLKSEFLANMSHE 300


>gi|119509388|ref|ZP_01628537.1| Multi-sensor Hybrid Histidine Kinase [Nodularia spumigena CCY9414]
 gi|119466002|gb|EAW46890.1| Multi-sensor Hybrid Histidine Kinase [Nodularia spumigena CCY9414]
          Length = 1508

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 77/257 (29%), Positives = 133/257 (51%), Gaps = 10/257 (3%)

Query: 565  KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
            K ++ +L  A++ AE  S  KS FLA +SHEIRTP+ A++G + ++         N    
Sbjct: 864  KLQREELEIARQEAELASQAKSAFLANMSHEIRTPMNAVLGMTGLLLETNL----NREQR 919

Query: 625  EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
            ++A  I  SG+ +L ++N++LD+SK+E+G+M L      L   V E + L+   A+++ +
Sbjct: 920  DFAETIRISGDALLCLINEILDLSKLEAGEMFLETLDFDLSTCVEEVLELLAPQAHKQEL 979

Query: 685  LIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVIL 739
             I      N+P  +  D   ++QI +N++ NAI FT +G +I++     S       +  
Sbjct: 980  EIAGLIHRNVPVHLQGDASRLRQILMNLVGNAIKFTSTG-EIVVRAELLSQTPNTVTIHF 1038

Query: 740  RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
             V DTG+G+++ +  K  +PF Q+  S   +  GTGLGL +++ +V    G   + S   
Sbjct: 1039 SVTDTGIGISSEDQNKLFQPFTQVDASITRKYGGTGLGLAISQQLVSLMGGTIGVNSQLG 1098

Query: 800  KGTLIEIIFPLYDTSHP 816
            KG+             P
Sbjct: 1099 KGSQFWFKLTFTQQLQP 1115



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/165 (15%), Positives = 59/165 (35%), Gaps = 5/165 (3%)

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
           I  E  +    +  ++ E   + +I++  S  + +++ +G I+  N+A  +  GY  +++
Sbjct: 382 IYREVTERTRTEEVLKQERNFISAIVDTASVLVVVMDLQGRIVRFNKACEQTTGYTFDEV 441

Query: 493 LRKPFTVFL-EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
             +PF            +     +I   D  +  E   L      +L++    I      
Sbjct: 442 RDRPFWKLFLIPEDVEPIKAAFKQIARGDKIKNYEHYWLTKHGNRRLIAWSNTILNDEQG 501

Query: 552 --SCYSLTMHDISEWKQEKNKL--SHAKKIAEKESSHKSDFLARV 592
                  +  DI+  K+ +  L   +A   A   S    +    +
Sbjct: 502 KVEYIIASGIDITARKRAEKDLAAQYATTKALAASETIGEATQGI 546



 Score = 55.0 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/171 (9%), Positives = 40/171 (23%), Gaps = 12/171 (7%)

Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDI 360
           Y              +  N     VD   +   V    G +   N +    T Y   +  
Sbjct: 383 YREVTERTRTEEVLKQERNFISAIVDTASVLVVVMDLQGRIVRFNKACEQTTGYTFDEV- 441

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
                   L   P+  +        + R D          H       N   + +     
Sbjct: 442 -RDRPFWKLFLIPEDVEPIKAAFKQIARGD----KIKNYEHYWLTKHGNRRLIAWSNTIL 496

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA-----TSDGIA 466
            ++  +         +    +  ++ +  +     ++  +      + GI 
Sbjct: 497 NDEQGKVEYIIASGIDITARKRAEKDLAAQYATTKALAASETIGEATQGIL 547



 Score = 46.9 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 11/124 (8%), Positives = 28/124 (22%), Gaps = 4/124 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKRQNTWYGKT 147
           +D  G +   ++   +T G    ++       +      ++P       + R +      
Sbjct: 417 MDLQGRIVRFNKACEQTTGYTFDEVRDRPFWKLFLIPEDVEPIKAAFKQIARGDKIKNYE 476

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
             W  +       I  +   +     +       GI                       L
Sbjct: 477 HYWLTK-HGNRRLIAWSNTILNDEQGKVEYIIASGI--DITARKRAEKDLAAQYATTKAL 533

Query: 208 HEIK 211
              +
Sbjct: 534 AASE 537


>gi|323526066|ref|YP_004228219.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1001]
 gi|323383068|gb|ADX55159.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1001]
          Length = 657

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 90/509 (17%), Positives = 169/509 (33%), Gaps = 33/509 (6%)

Query: 328 KCPIPFFVYSHGNLFYAN----PSFLLLTKYKSVDDIEIAGGLSTLLDA----PKLSDNN 379
              I       G L  A      +   +    SV+       L  L              
Sbjct: 10  AASILVVDDDEGILRLARKSLERAGCRVAVCASVEAARERLALGGLDLLVLDYQLSGPET 69

Query: 380 AIKPVMLYRSDRTCIA------ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
            +      R++   I        +     I+  R     +     +  +  PE + +   
Sbjct: 70  GLDFFRRLRAEGVRIPAILVTGFTDESRVIEALRAGVSDVVPKSGDYLDYLPEAVERVLS 129

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
           +            +        ++ EA    +   N  G     ++      G       
Sbjct: 130 QVRLQRASDEALLLRDREQHYRNLSEALPHLVLTCNAAGDCDFLSKQWYDYTGLAENSSH 189

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553
              +   +       +     + ++     T          + +       +     +  
Sbjct: 190 GLAWLDAVHPEDREEVRRSWLKAVA-GHAGTYRHELRIRRHDGEYRWFDARMVATRDNDG 248

Query: 554 ----YSLTMHDIS-------EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
               +  +  D+        E ++       A++ AE+ +  K  FLA +SHE+RTPLT 
Sbjct: 249 NISKWFGSCTDVHSEREAMQERERLLASEQAARQTAEEANRAKDRFLAMLSHELRTPLTP 308

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           ++  + V++          +       I R+  L   +++DLLD++++ +GK+ L  E V
Sbjct: 309 VLAGASVLE---MIADLPDQARASVRMIRRNVELEARLIDDLLDLTRVANGKLRLSLETV 365

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
            + E +   + L +     K+  +          +LAD   ++Q+  N++ NA  FTP G
Sbjct: 366 DVHEVIDSVLELFRSEIQVKQQDVHVHKDATHHYVLADRARLQQMLWNLIRNAAKFTPDG 425

Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
           G I + T       V + V DTG+G+   ++ K    F Q       +  G GLGL + K
Sbjct: 426 GHIYVRTR-DERMHVQISVEDTGIGIEPEQIGKLFNAFEQGDQKMTRQFGGLGLGLAITK 484

Query: 783 AMVDANMGKFYIFSTPAK--GTLIEIIFP 809
           A+ D + G     S P    G    I  P
Sbjct: 485 ALTDVHGGTVTAQS-PGAHCGATFTITLP 512


>gi|326201973|ref|ZP_08191843.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium papyrosolvens DSM 2782]
 gi|325987768|gb|EGD48594.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium papyrosolvens DSM 2782]
          Length = 512

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 69/256 (26%), Positives = 129/256 (50%), Gaps = 6/256 (2%)

Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
              ++  D  E  Q  +  +H  +  ++    +  F+A VSHE+RTP+T+I GF E I +
Sbjct: 254 RIVVSSQD--EIGQLADSFNHMVEDLQRLEELRRGFIANVSHELRTPMTSIRGFIEGILD 311

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
              G +   R   Y   +    N +  +VNDLLD++K+ESG++ L  +P  ++E +   +
Sbjct: 312 ---GTIPPERQKGYLTIVRDETNRLNRLVNDLLDLAKMESGELTLTMKPFDINELIRICV 368

Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
             ++     K + I  +F  +   + AD  S++++ +N+L NA+ F+   G+II+ T   
Sbjct: 369 IKLETLITSKNLEIEANFEIDNMMVSADKDSIERVIINLLHNAVKFSNENGKIIVETAKN 428

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
            + ++ + V+D G+G+   + ++    F +   S+     GTGLGL + K +V  +    
Sbjct: 429 KD-KIYVSVKDNGIGIDGDDKKRIWDRFYKSDKSRGKDKTGTGLGLAIVKNIVTEHKQDI 487

Query: 793 YIFSTPAKGTLIEIIF 808
           ++ S   KGT      
Sbjct: 488 WVESEVGKGTKFTFTL 503


>gi|116750533|ref|YP_847220.1| putative PAS/PAC sensor protein [Syntrophobacter fumaroxidans MPOB]
 gi|116699597|gb|ABK18785.1| PAS/PAC sensor hybrid histidine kinase [Syntrophobacter
           fumaroxidans MPOB]
          Length = 733

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 87/570 (15%), Positives = 188/570 (32%), Gaps = 46/570 (8%)

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
                         F   N   +        +                 S     +E E 
Sbjct: 53  WERGPGQPRFSDPIFGW-NEPVFLSAAIMVLVVCALLVPIVIRRGEERKSAGKGAEETER 111

Query: 321 LTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
           L    +   P+ F +     + + N +   +    + +       ++ L       +   
Sbjct: 112 LLAAVLSASPVGFCLLKEDIIQWVNQALCDILGRGAEELEGR--SIAGLYAEEGEHERVK 169

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
            +   L     +   A A    I+ N      +            +      +  +  + 
Sbjct: 170 TQ---LLNGCTSSEGAGAAACWIRGNGSTLHCL-LQAAPTGMSTLDGKRVLAVM-DTSEL 224

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +  +  +     +     E       +   +G +LS N A  ++FG+P  +        F
Sbjct: 225 KRKEEALLESEERYRRFFEEDLAAAYVSTPDGRLLSCNPAFVRIFGFPSVEAAITSDLNF 284

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH- 559
           L+  +       +  I      +        +  + K + + +              +  
Sbjct: 285 LQPAS-DSEAGVVELIRKRKKIENYRCEL--NRCDGKRVHVVMNAVGTFTRQGELTLLKG 341

Query: 560 ---DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
              D+++ K  + +L  A+K+              ++H+    LTAI G+++ +++   G
Sbjct: 342 YLLDVTDQKNLEEQLRQAQKM-----EAVGRLAGGIAHDFNNLLTAITGYADTLESNLKG 396

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
                   + A  I R+      + + LL  S+    K  L    + L + V+    +++
Sbjct: 397 ---EDALRKNAEEIRRAAERAAALTSQLLAFSR----KQVLRPRVLDLRDVVARMEEMLR 449

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT------ 730
                + I + T+    + R+ AD   ++Q+ +N++ NA    P GG+++I         
Sbjct: 450 RLI-GENIALCTAVDEGLWRVKADQGQIEQVIMNLVVNARDAMPQGGRLLIEARNVELDG 508

Query: 731 --------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
                         V+L V D G+GM++  +    +PF         +G+GTGLGL    
Sbjct: 509 SYVSRHMAVNPGSYVLLAVSDDGMGMSSETISHLFEPFYTTK----EQGKGTGLGLATVY 564

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
            +V  + G  +++S P +GT  +I  P  +
Sbjct: 565 GIVTQSGGHIWVYSEPGEGTTFKIYLPRVE 594



 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/284 (8%), Positives = 70/284 (24%), Gaps = 19/284 (6%)

Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKK---------GHSSVEKEKYDIFSQQSPPPH 233
           ++             +  ++  + +                  V +   DI  + +    
Sbjct: 92  VIRRGEERKSAGKGAEETERLLAAVLSASPVGFCLLKEDIIQWVNQALCDILGRGAEELE 151

Query: 234 LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293
            R    + +    +      L         +  ++   + +  T++           TL 
Sbjct: 152 GRSIAGLYAEEGEHERVKTQLLNGCTSSEGAGAAACWIRGNGSTLHCLLQAAPTGMSTLD 211

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTK 353
              +      +        A  +  E       +     +     G L   NP+F+ +  
Sbjct: 212 GK-RVLAVMDTSELKRKEEALLESEERYRRFFEEDLAAAYVSTPDGRLLSCNPAFVRIFG 270

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
           + SV+    A         P       +  ++  R              +       + +
Sbjct: 271 FPSVEA---AITSDLNFLQPASDSEAGVVELIRKRKK-----IENYRCELNRCDGKRVHV 322

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
                    +  E     G   +  D +  + ++  +  ++ ++
Sbjct: 323 VMNAVGTFTRQGELTLLKGYLLDVTDQKNLEEQLR-QAQKMEAV 365



 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/406 (9%), Positives = 92/406 (22%), Gaps = 37/406 (9%)

Query: 61  SVSNTNYLDSENTFVFDPIPRTVRFTWNID--------AHGYLKEISEELPKTIGNYAFK 112
           +V +T+ L  +   + +   R  RF +  D          G L   +    +  G  + +
Sbjct: 217 AVMDTSELKRKEEALLESEERYRRF-FEEDLAAAYVSTPDGRLLSCNPAFVRIFGFPSVE 275

Query: 113 MIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172
                  +            +  + KR+     +  L   +G    V + + A+  ++R 
Sbjct: 276 AAITSDLNFLQPASDSEAGVVELIRKRKKIENYRCELNRCDG--KRVHVVMNAVGTFTRQ 333

Query: 173 REFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP 232
            E +  +G+ +        +     ++  K  +                  I        
Sbjct: 334 GELTLLKGYLL--DVTDQKNLEEQLRQAQKMEAVGRLAGGIAHDFNNLLTAITGYADTLE 391

Query: 233 HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL 292
                            +           L +       +     +       ++    L
Sbjct: 392 SNLKGEDALRKNAEEIRRAAERAAALTSQLLAFSRKQVLRPRVLDLRDVVARMEEMLRRL 451

Query: 293 QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV---DKCPIP--FFVYSHG-------- 339
              +      +        +      + +    V   D  P      + +          
Sbjct: 452 IGENIALCTAVDEGLWRVKADQGQIEQVIMNLVVNARDAMPQGGRLLIEARNVELDGSYV 511

Query: 340 -NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398
                 NP   +L           +  +S L +    +        +            A
Sbjct: 512 SRHMAVNPGSYVLLAVSDDGMGMSSETISHLFEPFYTTKEQGKGTGL----------GLA 561

Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
            ++ I       + +   P E            G   E +  R   
Sbjct: 562 TVYGIVTQSGGHIWVYSEPGEGTTFKIYLPRVEGEVEEVLPARQEA 607



 Score = 40.8 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 25/265 (9%), Positives = 60/265 (22%), Gaps = 17/265 (6%)

Query: 98  ISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY---GKTTLWPIEG 154
           +++ L   +G  A ++ G  +  +        +  +   L    T     G    W I G
Sbjct: 135 VNQALCDILGRGAEELEGRSIAGLYAEEG--EHERVKTQLLNGCTSSEGAGAAACW-IRG 191

Query: 155 TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214
               +   L A P         G R   ++                ++++    E     
Sbjct: 192 NGSTLHCLLQAAPTG--MSTLDGKRVLAVM-DTSELKRKEEALLESEERYRRFFEEDLAA 248

Query: 215 SSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271
           + V      + S                  +    +       +     L+   +     
Sbjct: 249 AYVSTPDGRLLSCNPAFVRIFGFPSVEAAITSDLNFLQPASDSEAGVVELIRKRKKIENY 308

Query: 272 QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI 331
           + + +  +  +               E      +    +     +E      +       
Sbjct: 309 RCELNRCDGKRVHVVMNAVGTFTRQGELTLLKGYLLDVTDQKNLEEQLRQAQKM-----E 363

Query: 332 PFFVYSHGNLFYANPSFLLLTKYKS 356
                + G     N     +T Y  
Sbjct: 364 AVGRLAGGIAHDFNNLLTAITGYAD 388


>gi|189466203|ref|ZP_03014988.1| hypothetical protein BACINT_02573 [Bacteroides intestinalis DSM
           17393]
 gi|189434467|gb|EDV03452.1| hypothetical protein BACINT_02573 [Bacteroides intestinalis DSM
           17393]
          Length = 885

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 131/644 (20%), Positives = 234/644 (36%), Gaps = 35/644 (5%)

Query: 180 GFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSV-----EKEKYDIFSQQSPPPHL 234
           G  I+   R   +       L++K   L EI+K             K   +S Q+     
Sbjct: 103 GDLILCQYRDITERSQRKLELERKNRELFEIQKAALIGRWIYNANAKEFSYSGQTGIMCT 162

Query: 235 RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294
             +  +           +   +    L+ + + ++ E  D+      +    +     + 
Sbjct: 163 EAEQSILLSDYLNFILPEDRDSFSNWLVQNLKGNMEESIDYRISLDKKVFYIRLKAFTRE 222

Query: 295 NSKESFEYLS--HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLT 352
             K+    L    +N   +    ++   LT    +     F  +  G L +AN  F L  
Sbjct: 223 RYKDGNVTLEGYIQNITDIQQRRNDINLLTHAINNSTEDIFAAHEDGTLIFANRQFKLHH 282

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
              + DDI              + +    K + +   +          + +    E    
Sbjct: 283 NLNNTDDITQLKIYE---IDSYVRNEEEWKKLAVSIKNGEKKLCVTMYNPLPLYPEILAY 339

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG 472
            +      +++    +   G   +      ++++++     L   +E    GI + + + 
Sbjct: 340 ESNAYCIISDEGEGTIWAFG--RDISQRIKHEQQIKRFSQILDKTIEYLPAGIVVKDIKN 397

Query: 473 II--LSTNR-AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
               L  NR + ++     +++ L K    F              EI +      +  IT
Sbjct: 398 NFKYLYRNRESYNR--EITMQEALGKDDFDFYPLEIAQEKRRQDIEIAATGQE--MHWIT 453

Query: 530 LGSTKEEKLLSLR---IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
                  + L L    + I+   FS        DI++ +  K +L  AK+ AE     KS
Sbjct: 454 EERDGNGQSLFLDKRKMKIESNDFSPILLNIEWDITDMELMKRELMVAKEKAETSDQLKS 513

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
            FLA +SHEIRTPL AIIGFS +I              EY N ++ +   +L ++N++LD
Sbjct: 514 AFLANMSHEIRTPLNAIIGFSRIIAE----SENTEERKEYYNIVEANNERLLQLINEILD 569

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706
           +SKIE+G +     PV L     E             + +    ++   RI +D   + Q
Sbjct: 570 LSKIEAGIVEFSIAPVRLYPLCKEIHDAHVFRCPS-DVELIFEPSDEDIRIDSDKNRIFQ 628

Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSNEE-VILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           +  N++ NA  FT  G    IS  +    E +I  V DTG G+   ++ K  + F +  N
Sbjct: 629 VISNLIGNAFKFTTHGS---ISYGYHQEGENIIFHVTDTGTGIAPEKIGKVFERFVKANN 685

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
                 +GTGLGL + K +++   G   + S   KGT      P
Sbjct: 686 F----AQGTGLGLAICKTIIERLGGTISVTSELEKGTTFTFNLP 725



 Score = 38.1 bits (87), Expect = 6.1,   Method: Composition-based stats.
 Identities = 18/128 (14%), Positives = 39/128 (30%), Gaps = 5/128 (3%)

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           +L   SD + +++++G+ +        L+    + +L K     L  NT         ++
Sbjct: 14  LLNMVSDTLILMDKDGVCVDIAIHNVDLWFIKEKRLLGKNLLSLLPSNTYREFYPEFKKV 73

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKK 576
           L    +           +              P+         DI+E  Q K +L    +
Sbjct: 74  LLQKTKSIRNYELTLRGRN-----YFFKCIMQPYGDLILCQYRDITERSQRKLELERKNR 128

Query: 577 IAEKESSH 584
              +    
Sbjct: 129 ELFEIQKA 136


>gi|296085009|emb|CBI28424.3| unnamed protein product [Vitis vinifera]
          Length = 1203

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 78/276 (28%), Positives = 128/276 (46%), Gaps = 30/276 (10%)

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
            ++   K  AE     KS FLA VSHEIRTP+  ++G  +++ +       +    +YA 
Sbjct: 626 RQMMELKVRAEAADVAKSQFLATVSHEIRTPMNGVLGMLKMLMDSGL----DANQQDYAE 681

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
               SG  ++ ++N++LD +KIESG++ L   P  L  A+   +SL    ++EK I +  
Sbjct: 682 TAHASGKDLISLINEVLDQAKIESGRLELEAVPFDLRAALDNVLSLFSGKSHEKGIELAV 741

Query: 689 SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN------------- 734
             ++ +P  ++ D    +QI  N++ N+I FT   G I +S                   
Sbjct: 742 YISDQVPEFVIGDPGRFRQIITNLVGNSIKFTHDKGHIFVSVHLADEVKFKKLSCTDSME 801

Query: 735 ----EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
                ++++ V DTGVG+ +    +   PF Q  +S      GTG+GL ++K +VD   G
Sbjct: 802 ETSIIKLLVTVEDTGVGIPSEAQSRIFMPFMQADSSTSRTYGGTGIGLSISKRLVDLMGG 861

Query: 791 KFYIFSTPAKGTLIEII--FPLYDTS------HPHD 818
           +    S P  G+       F   +TS       PHD
Sbjct: 862 EIGFESEPGTGSTFSFTVAFTKGETSLLDTKQQPHD 897


>gi|262383010|ref|ZP_06076147.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
 gi|262295888|gb|EEY83819.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
          Length = 732

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 92/474 (19%), Positives = 184/474 (38%), Gaps = 39/474 (8%)

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRS-DRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
           G L   + +P          V+  +    +        +           +         
Sbjct: 267 GTLDGSIVSPDHPRPVFDYQVLEKKGFSPSDCPLDTFFYLKPSTFWEQYRLHISMSVLLL 326

Query: 423 QFPENMPQNGIEPEDVDTRINKRKME------IEVMQLCSILEATSDGIAIINREGIILS 476
            F        IE       + +R++E          +L   L+  +      +    ++ 
Sbjct: 327 FFIIFFLLWRIETLGRQRNLQRRELELMKDYRALSRKLSLALDVANIIPWRWDLRAHLIF 386

Query: 477 T-----NR---AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528
                 N     + +       +I  + +   + ++    +      ++  D+ +  E+ 
Sbjct: 387 CDIQCSNSDLSNLEQPMPKRSLEISEEKYFSKIRKSDRERLRSVCEALIRGDIDKVKEEF 446

Query: 529 TLGS--TKEEKLLSLRI-IIKKLPFSSCYSLTMH----DISEWKQEKNKLSHAKKIAEKE 581
            +            + +  I +      Y + +      I+E K+ + +L  A+  AE+ 
Sbjct: 447 LIYRSGRSNPNFDWIEVQAIVEKRDERGYPIVLTGSSLRITERKRIEEELLRARDKAEES 506

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
           +  KS FLA +SHEIRTPL AI+GFS+++              ++ + I+ +  L+L ++
Sbjct: 507 NRLKSTFLANMSHEIRTPLNAIVGFSQIL----TTTDDEEEKKQFVSIIESNNVLLLQLI 562

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP--RILA 699
            D+LD+SKIE+G +      V L+  ++E  S ++L   +    +   F + +P  R+  
Sbjct: 563 GDILDLSKIEAGTLEFVRNEVDLNVLMNELESSMRLKIAD---TVELRFTDRMPSCRLYV 619

Query: 700 DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKP 759
           D   + Q+ +N+L+NA+ FT  G  I         + +   V DTG G+   +L    + 
Sbjct: 620 DKNRLSQVLINLLTNAMKFTKEG-YIHFGYRLVDEDTLEFYVSDTGCGIPKEQLRNIFER 678

Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII---FPL 810
           F ++ N       GTGLGL + + +V+   G+ ++ S   KG         FP+
Sbjct: 679 FIKLNNFVS----GTGLGLSICQVIVERMGGRIWVESDEGKGATFFFTIKYFPI 728


>gi|33863684|ref|NP_895244.1| two-component sensor histidine kinase [Prochlorococcus marinus str.
           MIT 9313]
 gi|33635267|emb|CAE21592.1| two-component sensor histidine kinase [Prochlorococcus marinus str.
           MIT 9313]
          Length = 685

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 75/394 (19%), Positives = 170/394 (43%), Gaps = 40/394 (10%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            ++    ++  S++   +DG  +++  G I+  N    ++F +   ++  +     L + 
Sbjct: 289 EELTAAQVKQQSLIATMADGALLLDEVGQIVLANPTARRIFRWEGRNLEGQELLNELPEI 348

Query: 505 TPSVMNHYLTEILSL-DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
             + ++  L  +L        L       ++  +++   +  +        ++T+ D++ 
Sbjct: 349 IANELHDPLQSLLRNIGESNDLRCSLEEPSRTLRIVLQSVRDQSGETLKGIAITVQDLTR 408

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
                           + ++ +S F++ VSHE+RTPL  I  + E + +     L     
Sbjct: 409 --------------EVELNAAQSRFISNVSHELRTPLFNIKSYVETLHD-LGDQLSEEEK 453

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            E+    +   + +  +VND+LD+S++ESG+  + FEP+ L  A+ + +   +L A++K+
Sbjct: 454 KEFLGIANSETDRLARLVNDVLDLSRLESGR-TVQFEPMDLRPAIEQTLRNYRLNADDKQ 512

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-------- 735
           I I  +  + +P IL +   + Q+  N++ N + F+ +GG +++      +         
Sbjct: 513 IHIELNTDDELPTILGNWDLLLQVLDNLVGNGLKFSRAGGSLMVRAYTWPDSCKMSPIES 572

Query: 736 --------------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
                         ++ + V DTG G+   + +     F ++ N+      GTGLGL + 
Sbjct: 573 SKSAPHCEFFSPLPKLRVEVADTGHGINQDDQQHIFDRFYRVENAVHTEA-GTGLGLSIV 631

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
           + +++ + G+  + S    GT      PL  T  
Sbjct: 632 RGIIEKHGGQIRMASEVELGTTFWFDLPLEQTDA 665


>gi|116686815|ref|YP_840062.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia cenocepacia
           HI2424]
 gi|116652530|gb|ABK13169.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia cenocepacia
           HI2424]
          Length = 776

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 75/379 (19%), Positives = 155/379 (40%), Gaps = 21/379 (5%)

Query: 444 KRKMEIEVMQLC--SILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
            R ++    +    +++E+ +D  + +++ +G + + N    ++ GY   +I+   F+ F
Sbjct: 266 ARDLQHRFAEFRFQTVVESITDYAVFMLDPDGNVATWNAGAQRIKGYRAAEIVGHHFSRF 325

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSL 556
              +  +        +         E       K+       + I  +  ++     +  
Sbjct: 326 YPPDAIAAGRPS-HGLEVAAAHGHFEDEGWRVRKDGTQFWASVTITPVRDATHALCGFIK 384

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
              D++E K+ +          E  +   S F+A ++HE+R  L  +     V+++    
Sbjct: 385 ITRDMTERKRLEE--------LEASTHRLSVFIAMLAHELRNHLAPLRNSVGVLQS---L 433

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
           P   P   +  + ++R    +  +V+DLLD+ +I +GK+ L   PV++ + V   +  +Q
Sbjct: 434 PDPAPVLAQCRDAVNRQVAQLTRLVDDLLDVGRITAGKVELDARPVTVRDIVCRGVESIQ 493

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
                +   IR     +   +  D   + Q+  N+L NA  F+P GG+I +         
Sbjct: 494 PKLAARGQWIRVDLPTDSVVLHGDDARLVQVLHNLLDNASKFSPHGGRIDVGARI-DGPS 552

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           V + V D GVG+    LE     F Q   + +    G GLGL + ++ V+ + G+    S
Sbjct: 553 VAISVVDHGVGIAPGALETIFDLFEQEGATGRSPSGGFGLGLAICRSFVELHGGRIAAES 612

Query: 797 -TPAKGTLIEIIFPLYDTS 814
             P  G    +  P+   +
Sbjct: 613 GGPGHGATFTVWLPIAQVA 631



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/276 (10%), Positives = 70/276 (25%), Gaps = 26/276 (9%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN--HIGDLLKRQNTW 143
            + +D  G +   +    +  G  A +++G           I      H  ++      +
Sbjct: 290 VFMLDPDGNVATWNAGAQRIKGYRAAEIVGHHFSRFYPPDAIAAGRPSHGLEVAAAHGHF 349

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG----KR 199
             +      +GT  +  + +   P+        GF    I            L     + 
Sbjct: 350 EDEGWRVRKDGTQFWASVTI--TPVRDATHALCGF--IKITRDMTERKRLEELEASTHRL 405

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP------------HLRMKNKVSSLTEYY 247
                   HE++   + +      + S   P P              ++   V  L +  
Sbjct: 406 SVFIAMLAHELRNHLAPLRNSVGVLQSLPDPAPVLAQCRDAVNRQVAQLTRLVDDLLDVG 465

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT----LQNNSKESFEYL 303
                 ++ +  P+   +      +     +       +    T    L  +     + L
Sbjct: 466 RITAGKVELDARPVTVRDIVCRGVESIQPKLAARGQWIRVDLPTDSVVLHGDDARLVQVL 525

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG 339
            +    +       G       +D   +   V  HG
Sbjct: 526 HNLLDNASKFSPHGGRIDVGARIDGPSVAISVVDHG 561


>gi|90020314|ref|YP_526141.1| response regulator receiver domain-containing protein [Saccharophagus
            degradans 2-40]
 gi|89949914|gb|ABD79929.1| GGDEF domain [Saccharophagus degradans 2-40]
          Length = 1526

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 73/248 (29%), Positives = 124/248 (50%), Gaps = 4/248 (1%)

Query: 563  EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
            E ++ + + S  ++  ++    K +FLA  SHE+RTPL  I+G +E + +   GPL + +
Sbjct: 851  ERQKVEQERSVVRR-LKQLDKLKDEFLANTSHELRTPLNGIVGLAESLMDGVTGPLSH-K 908

Query: 623  YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
              +    I  SG  +  +V+DLLD ++++   M L+ + V +   V   +SL       K
Sbjct: 909  TKQNLAMIVSSGKRLAGLVDDLLDFAQLKHRGMALNKKAVDIHVLVDVVLSLTLPIIGAK 968

Query: 683  RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
             I +  + +  +P++ AD   + QI  N++ NA+ FT  G  + IS      EE+ + V 
Sbjct: 969  PIELVNNVSKQLPKVAADESRLLQILHNLVGNAVKFTDEGS-VTISAEVQ-GEEICISVA 1026

Query: 743  DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
            DTG+G+     E+    F Q+  +      GTGLGL + K +V+ + G   + ST  KG 
Sbjct: 1027 DTGIGVPENRFEEIFDSFRQLEGASNRVYGGTGLGLSVTKQLVELHGGTIGVRSTLGKGA 1086

Query: 803  LIEIIFPL 810
                  PL
Sbjct: 1087 TFYFYLPL 1094


>gi|332982065|ref|YP_004463506.1| integral membrane sensor signal transduction histidine kinase
           [Mahella australiensis 50-1 BON]
 gi|332699743|gb|AEE96684.1| integral membrane sensor signal transduction histidine kinase
           [Mahella australiensis 50-1 BON]
          Length = 479

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 57/243 (23%), Positives = 117/243 (48%), Gaps = 6/243 (2%)

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           Q     +   +  E     +  F++ VSHE+++PLT+I GF + I +   G +      +
Sbjct: 239 QLATSFNKMAEALENLEDMRRGFVSSVSHELKSPLTSIRGFVQGILD---GTIPTEEQTQ 295

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           Y   +    + +  I+ +LL++S++ES +  L      ++E +   +   +    +K + 
Sbjct: 296 YLTIVLEETDRLNKIIKELLELSRMESSQFQLAMSNFDVNELIRRVLLKQEKRIEQKELD 355

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           ++  F  +   + AD   ++++ +N++ NAI FTP  G++I+ST      +V + V D+G
Sbjct: 356 VQIDFEQDRCMVEADKDRIEEVLINLIDNAIKFTPEKGRLIVSTRVE-GNKVYISVSDSG 414

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G++  ++    + F     S       TGLGL + K +++ +    ++ S P KGT   
Sbjct: 415 IGISEEDMPHIWERFYTADKS--RASGSTGLGLSIVKRIIEQHRQSIWVKSIPGKGTTFT 472

Query: 806 IIF 808
              
Sbjct: 473 FTL 475


>gi|331642849|ref|ZP_08343984.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           H736]
 gi|331039647|gb|EGI11867.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           H736]
          Length = 612

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 94/467 (20%), Positives = 199/467 (42%), Gaps = 30/467 (6%)

Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
            +   +   +I      + L +  +         +++  +    I+    +   +    N
Sbjct: 162 SMLPIERNGEILGYIWANELTEDIRRQAWKMDVRIIIVLTAGLLISLLLIVLFSRRLSAN 221

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN--KRKMEIEVMQLCSILEATSDGIAI 467
              +T      A   P  +PQ   E   +   +N   + +         I+E  +DG+  
Sbjct: 222 IDIITDGLSTLAQNIPTRLPQLPGEMGQISQSVNNLAQALRETRTLNDLIIENAADGVIA 281

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
           I+R+G + + N A   + GY   +++ +P+++       +     + + L          
Sbjct: 282 IDRQGDVTTMNPAAEVITGYQRHELVGQPYSMLF---DNTQFYSPVLDTLEHGTEHV-AL 337

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
                 ++ + + L +   ++  +        +   D++  K+ + +++ A+++A     
Sbjct: 338 EISFPGRD-RTIELSVTTSRIHNTHGEMIGALVIFSDLTARKETQRRMAQAERLAT---- 392

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
              + +A V+HE+R PLTAI G+ ++++ Q   P+    + EY + + +  + +  ++  
Sbjct: 393 -LGELMAGVAHEVRNPLTAIRGYVQILRQQTSDPI----HQEYLSVVLKEIDSINKVIQQ 447

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703
           LL+ S+    +    ++ VSL+  V E + LVQ    + R+   +   N +  I AD   
Sbjct: 448 LLEFSRPRHSQ----WQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSPINADREL 503

Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
           +KQ+ LNIL NA+    + G+I I T   S+ +  + + D G G+     +K   PF   
Sbjct: 504 LKQVLLNILINAVQAISARGKIRIQTWQYSDSQQAISIEDNGCGIDLSLQKKIFDPFFTT 563

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             S      GTGLGL L++ +++A+ G   + S P  G    +I P+
Sbjct: 564 KAS------GTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILPI 604



 Score = 40.8 bits (94), Expect = 0.98,   Method: Composition-based stats.
 Identities = 12/117 (10%), Positives = 37/117 (31%), Gaps = 6/117 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G +  ++       G    +++G     +    +    + + D L+          
Sbjct: 282 IDRQGDVTTMNPAAEVITGYQRHELVGQPYSMLF--DNTQFYSPVLDTLEHGTEHVALEI 339

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
            +P     + + +  +   I++ + E  G     I        + +    + ++  +
Sbjct: 340 SFPGRDRTIELSVTTS--RIHNTHGEMIGA--LVIFSDLTARKETQRRMAQAERLAT 392


>gi|324326617|gb|ADY21877.1| hypothetical protein YBT020_13225 [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 595

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 91/508 (17%), Positives = 176/508 (34%), Gaps = 41/508 (8%)

Query: 314 YFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                E      +   P+    +  +G+    N    ++T Y + + I     L  L   
Sbjct: 107 LLTRKEEELHTILQNMPVMVDALDYNGDFVLWNRECEIVTGYTAEEVIGNPNALRLLYPD 166

Query: 373 PKLSDNNAIKPVML----YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
                    K +         +      +  + TI W+                      
Sbjct: 167 HDYRHEIQKKFLTRGKNFRDWEMRLTCKNGEIKTIMWSN-----------ISEQFPVSGF 215

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
               +  +    +  + K++ +  +L  I +A  D   +   +G I+         F  P
Sbjct: 216 SYWAVGVDITHLKAIEEKLKQQTSELEVIFQALPDLCFLTEDDGTIIDYKAGSPTKFYVP 275

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            E  + K F   L           + ++        +E     +   +           L
Sbjct: 276 AETFMGKKFYEVLPSTVAKKFQEAICQVKEKGTNVIVEYPLTINESIDFF---EARCLPL 332

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                  + + DI+E K+ +  L+ +  +A           A V+HE+R PLT I GF +
Sbjct: 333 LHDK-IMIIVRDITERKKTEELLNKSDTLA-----AIGQLAAGVAHEVRNPLTVIKGFIQ 386

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
                    +      +Y + +      +  I+ + L I+K +     L  E  +L +  
Sbjct: 387 ------LFQINKEDQEKYFDLMLSEIERIEAILQEFLSIAKTD----ELSTEKKNLYQIF 436

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
              +SL+   A    I +     +    I      +KQ+ +NIL N+I   P GG+I I 
Sbjct: 437 KNVVSLINTKAIMTNIQVELYTDSKDIIIECSENQLKQVFINILQNSIEAMPDGGRISIH 496

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                 + +I+ V D G+G+    +++  +PF         + +GTG+GL L+  +++++
Sbjct: 497 IKEIGKDGIIISVIDKGIGIPEERIKRLGEPFY------STKEKGTGIGLMLSYKIIESH 550

Query: 789 MGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
            G   I S    GT + I  P + +  P
Sbjct: 551 QGNISIMSEVGVGTTVTIYLPKFQSKKP 578


>gi|158340839|ref|YP_001522007.1| two-component hybrid sensor and regulator [Acaryochloris marina
            MBIC11017]
 gi|158311080|gb|ABW32693.1| two-component hybrid sensor and regulator [Acaryochloris marina
            MBIC11017]
          Length = 1549

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 81/593 (13%), Positives = 193/593 (32%), Gaps = 50/593 (8%)

Query: 239  KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE 298
            +V S+      +D            S       +              +    +   + +
Sbjct: 830  EVCSIDPMIVPEDRPQVVTTVQEAVSSLMPFQVEYRIQDKQDQIRYFWEKGQPIPAQNGQ 889

Query: 299  SFEYLSH----RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG--NLFYANPSFLLLT 352
                                  E +      ++      +        L Y +P+   + 
Sbjct: 890  PLHIDGVIFDVTEGKLAEVAHQESQQRLNNILESLQDIVWSVKADSFELLYLSPAAEEIY 949

Query: 353  KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
                   I      S L       D+ A       R      +       ++ +  +   
Sbjct: 950  GRP----ISAFIDNSQLWLQAMHPDDRAKVSGFSERIL-ETGSQEVEYRIVRPDG-SIRW 1003

Query: 413  MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG 472
            +        +     +  +G+  +  + + +    + ++ +L ++L   +D I +   +G
Sbjct: 1004 LLDRGRVIKDAEERVLRLDGVATDITERKQS----QEQISELAALLNVATDAILVQGLDG 1059

Query: 473  IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
             I   ++  S L+G+   + L +     LE          + + +    +   E+  +  
Sbjct: 1060 RIQYWSKGASALYGWTQGEALSQEVGQLLEVTDEKA--AEIEQYVRQHGKWQGEQQQVTK 1117

Query: 533  TKEEKLLSLRIIIKK--LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
            + +   +  R  + K  L       +   D+++ K+ + +   A+++            +
Sbjct: 1118 SGDAITVMSRWTLVKDSLGNPKAILIVNTDVTQAKKLEKQFLRAQRL-----ESIGALAS 1172

Query: 591  RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650
             ++H++   LT I G ++++      P  + +       +         ++  +L  S+ 
Sbjct: 1173 GIAHDLNNILTPIYGVAQLL--PLQLPNASEQIQHQFEILQTCAQRGSKLITQVLSFSRG 1230

Query: 651  ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710
              G+  +    + +   +SE +    L    K I + T   +++  I AD   V Q+ +N
Sbjct: 1231 ADGERAI----LYIKPLLSE-LRDFTLKTFPKSIEVSTHIPDDLWSIHADATQVHQVFMN 1285

Query: 711  ILSNAIHFTPSGGQIIIS--------------TTHTSNEEVILRVRDTGVGMTNYELEKA 756
            +L NA    P GG + I                   +   +++ V DTG+G+     E+ 
Sbjct: 1286 LLVNARDAMPEGGSLSIHAMNFPLDEALAADFLNAQAGPYILITVTDTGIGIPPELQEQI 1345

Query: 757  MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             +PF            GTGLGL     ++ ++ G   ++S   +GT  ++  P
Sbjct: 1346 FEPFFTTKEP----EGGTGLGLSTVNKIIQSHHGFITVYSEVGQGTQFKVYLP 1394



 Score =  116 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 54/550 (9%), Positives = 137/550 (24%), Gaps = 67/550 (12%)

Query: 92   HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ-NTWYGKTTLW 150
             GY K ++     T+G    +++     +       D      + L    NT   +    
Sbjct: 512  DGYFKTVNPAFISTLGYSIKELLAQPFLNFVHPEDRDATVRELEQLAMGTNTIAFENRYR 571

Query: 151  PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
              +G+  Y     +A P   + + ++         +       RA  +    +   L   
Sbjct: 572  CHDGS--YRWFLWSATPYLQQQQIYASASDITKQKIIEQTLALRARQQTSVAQLGALALA 629

Query: 211  KKGHSSVEKEKYDIF------------------------SQQSPPPHLRMKNKVSSLTEY 246
             +    +  E   +                         +     P L  +  + +  E 
Sbjct: 630  SRDIDGLMNEIVRVVSQTLEVEYCKVLQLRPDGESLLLKAGVGWQPGLVGQAIIGTEQES 689

Query: 247  YAHKDDVLKTEKYPLLTSEESSLPEQED---------------FHTINLNQYTKKQYFGT 291
             A                 E+                                       
Sbjct: 690  QAGYTLRSSRPVIVDNLETETRFSGPPLLLDHKVVSGMSVILQGQHQTYGVIGAHTGHHR 749

Query: 292  LQNN-----SKESFEYLSHRNHP-SLSAYFDEGENLTPETVDKCPIP---FFVYSHGNLF 342
            L N       +     L+       +     + E       +  P      F   H  + 
Sbjct: 750  LFNENDIDFLQSVANLLAQALDRHQIDQTLRQSEQEYRTLAENLPGIVYRVFPEDHNRMV 809

Query: 343  YANPSFLLLTKYKSVDD-IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401
            + N     LT   S+D  +     +  ++               +     + +       
Sbjct: 810  FLNDQCKTLTGNDSIDLSVGEVCSIDPMIVPEDRPQVVTTVQEAVS----SLMPFQVEYR 865

Query: 402  TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
                                 Q  + +  +G+  +  + ++ +   +    +L +ILE+ 
Sbjct: 866  IQDKQD-QIRYFWEKGQPIPAQNGQPLHIDGVIFDVTEGKLAEVAHQESQQRLNNILESL 924

Query: 462  SDGIAIINRE-GIILSTNRAVSKLFG--YPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
             D +  +  +   +L  + A  +++G          + +   +  +  + ++ +   IL 
Sbjct: 925  QDIVWSVKADSFELLYLSPAAEEIYGRPISAFIDNSQLWLQAMHPDDRAKVSGFSERILE 984

Query: 519  LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS----LTMHDISEWKQEKNKLSHA 574
               +   E        +  +  L    + +  +            DI+E KQ + ++S  
Sbjct: 985  TGSQ---EVEYRIVRPDGSIRWLLDRGRVIKDAEERVLRLDGVATDITERKQSQEQISEL 1041

Query: 575  KKIAEKESSH 584
              +    +  
Sbjct: 1042 AALLNVATDA 1051



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 25/185 (13%), Positives = 59/185 (31%), Gaps = 7/185 (3%)

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471
            +  +  +  +          I  +     + ++  E +  +  S+   + D   I   +
Sbjct: 456 LIVVLCRQPLDDLAFIEEVLTILAQKTTAELERQTAETDRNRFLSV---SLDLHCIAGFD 512

Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
           G   + N A     GY ++++L +PF  F+           L ++       T+      
Sbjct: 513 GYFKTVNPAFISTLGYSIKELLAQPFLNFVHPEDRDATVRELEQLAMG--TNTIAFENRY 570

Query: 532 STKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
              +                     +  DI++ K  +  L+   +  ++ S  +   LA 
Sbjct: 571 RCHDGSYRWFLWSATPYLQQQQIYASASDITKQKIIEQTLA--LRARQQTSVAQLGALAL 628

Query: 592 VSHEI 596
            S +I
Sbjct: 629 ASRDI 633


>gi|148548085|ref|YP_001268187.1| multi-sensor signal transduction histidine kinase [Pseudomonas
           putida F1]
 gi|148512143|gb|ABQ79003.1| PAS/PAC sensor hybrid histidine kinase [Pseudomonas putida F1]
          Length = 978

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 89/374 (23%), Positives = 160/374 (42%), Gaps = 17/374 (4%)

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT---VFLEQNTPS 507
                 I +   + + +++  G +L  N+   +  G  +E+I  KPF     +       
Sbjct: 33  EEHARIIFDGLYEFVGLLDAHGNVLEVNQVALEGGGITLEEIRGKPFWKARWWQISKKTE 92

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM----HDISE 563
                L E  S       +   LG +   +++++   +  +       + +     +I++
Sbjct: 93  ATQKRLVETASSGEFVRCDVEILGKSGGREVIAVDFSLLPICNEEGSIVYLLAEGRNITD 152

Query: 564 WKQEKNKLSHAKKIAEKE-------SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            K+ +  L+   +  E+         + KSDF A+VSHE+RTPL+ I+G  E +     G
Sbjct: 153 KKKAEAMLALKNQELEQSVECIRKLDNAKSDFFAKVSHELRTPLSLILGPLEAVMAAEAG 212

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
                 Y +    I R+   +L  VN LLD++K+++ +M L +   +L +      S  +
Sbjct: 213 RESP--YWKQFEVIQRNAMTLLKQVNTLLDLAKMDARQMGLSYRRANLSQLTRTISSNFE 270

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
             A +K I   T     +     D    ++I LN+LSNA  FTP GG I    + +    
Sbjct: 271 GIAQQKSITFDTKLPVQMVA-EVDCEKYERIILNLLSNAFKFTPDGGLIRCCLSLSRPNY 329

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
            ++ V D+G G+     ++  + F Q+    Q    GTGLGL + K  V+ + G   +  
Sbjct: 330 ALVTVSDSGPGIPPALRKEIFERFHQLSQEGQQATRGTGLGLSIVKEFVELHRGTISVSD 389

Query: 797 TPAKGTLIEIIFPL 810
            P  G L ++  PL
Sbjct: 390 APGGGALFQVKLPL 403



 Score =  258 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 74/438 (16%), Positives = 162/438 (36%), Gaps = 32/438 (7%)

Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR---KMEIEV 451
             SA     + +   S+ +      K      +                ++    +    
Sbjct: 553 PFSAHELRARVSNLVSMKVAGDALRKELSDQGDDIAILTHRLIKSRHRLQQSNIALSASE 612

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
            +  ++ E ++ GI + + E  IL+ N A  ++ GY  +D+           +    +  
Sbjct: 613 ARWKAVYENSAAGIVLTDPENRILNANPAFQRITGYGEKDLEGLSMEQLTPSDESPQIKQ 672

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLS----LRIIIKKLPFSSCYSLTMHDISEWKQE 567
            L  +L     +          K    +     + ++ +++  S      + DI+E KQ 
Sbjct: 673 RLANLLQGGGAE-YSVERSYLCKNGSTIWANASVSLMPQRVGESPVILQIIDDITEKKQA 731

Query: 568 KNKLSHAKKIAEKESSH--KSDFLARVSHEIRTPLTAIIGFSE----VIKNQRFGPLGNP 621
           +  L+  ++     S      +F A ++HEI  PL+AI+  +      + N+   P   P
Sbjct: 732 QENLNQLQQQLVYVSRSATMGEFAAYIAHEINQPLSAIMTNANAGTRWLGNE---PSNIP 788

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
              E    I R  +   +I+  +    K    +     +P+ L   V++   +++  +  
Sbjct: 789 EAKEALARIIRDSDRAAEIIRMVRSFLK----RQETVLKPIDLKALVTDTSLILKAPSQN 844

Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG----GQIIISTTHTSNEE- 736
             + +     + +P I  D   ++Q+ +N+  NAI           Q+ +S +     + 
Sbjct: 845 NSVNLDVVADDELPEIWGDGVQIQQLIINLAMNAIEAISQADCETRQLTLSFSGNDTGDA 904

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           +++ V+DTG G++  ++ +    F           EG G+GL +   + + + GK ++  
Sbjct: 905 LVISVKDTGPGISERQMAQLFNAFYTTKK------EGLGMGLAICLTITEVHNGKIWVEC 958

Query: 797 TPAKGTLIEIIFPLYDTS 814
            PA G    +  P    S
Sbjct: 959 PPAGGACFLVSIPARQGS 976



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/150 (8%), Positives = 44/150 (29%), Gaps = 9/150 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH-IDPNNHIGDLLKRQNT-WYGK 146
            D    +   +    +  G     + G+ +  ++           + +LL+     +  +
Sbjct: 629 TDPENRILNANPAFQRITGYGEKDLEGLSMEQLTPSDESPQIKQRLANLLQGGGAEYSVE 688

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
            +     G+ ++    ++ +P               I+ +     + +   + L++    
Sbjct: 689 RSYLCKNGSTIWANASVSLMPQRVGESPV-------ILQIIDDITEKKQAQENLNQLQQQ 741

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRM 236
           L  + +  +  E   Y       P   +  
Sbjct: 742 LVYVSRSATMGEFAAYIAHEINQPLSAIMT 771



 Score = 46.2 bits (108), Expect = 0.027,   Method: Composition-based stats.
 Identities = 27/217 (12%), Positives = 61/217 (28%), Gaps = 11/217 (5%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMR-----LCDVSDILHIDPNNHIGDLLKR 139
           F   +DAHG + E+++   +  G    ++ G          +S          +      
Sbjct: 46  FVGLLDAHGNVLEVNQVALEGGGITLEEIRGKPFWKARWWQISKKTEATQKRLVETA-SS 104

Query: 140 QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199
                    +    G    + +D + LPI +           G            A+   
Sbjct: 105 GEFVRCDVEILGKSGGREVIAVDFSLLPICNEEGSIVYLLAEG--RNITDKKKAEAM--- 159

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
           L  K   L +  +    ++  K D F++ S      +   +  L    A +         
Sbjct: 160 LALKNQELEQSVECIRKLDNAKSDFFAKVSHELRTPLSLILGPLEAVMAAEAGRESPYWK 219

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS 296
                + +++   +  +T+        +  G     +
Sbjct: 220 QFEVIQRNAMTLLKQVNTLLDLAKMDARQMGLSYRRA 256



 Score = 42.7 bits (99), Expect = 0.28,   Method: Composition-based stats.
 Identities = 18/185 (9%), Positives = 41/185 (22%), Gaps = 7/185 (3%)

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
           P    E  +         +  +   K+                 S       +      E
Sbjct: 553 PFSAHELRARVSNLVSMKVAGDALRKELSDQGDDIAILTHRLIKSRHRLQQSNIALSASE 612

Query: 320 NLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
                  +       +      +  ANP+F  +T Y   D +E        L     S  
Sbjct: 613 ARWKAVYENSAAGIVLTDPENRILNANPAFQRITGYGEKD-LEGLSM--EQLTPSDESPQ 669

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
              +   L +      +      +      +++           +  E+     I  +  
Sbjct: 670 IKQRLANLLQGGGAEYSVE---RSYLCKNGSTIWANASVSLMPQRVGESPVILQIIDDIT 726

Query: 439 DTRIN 443
           + +  
Sbjct: 727 EKKQA 731


>gi|91772717|ref|YP_565409.1| external sensor signal transduction histidine kinase
           [Methanococcoides burtonii DSM 6242]
 gi|91711732|gb|ABE51659.1| Signal transduction histidine kinase [Methanococcoides burtonii DSM
           6242]
          Length = 592

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 77/248 (31%), Positives = 133/248 (53%), Gaps = 4/248 (1%)

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           SE ++  + L +A K  ++    K+DF++ VSHE++TPLTA+   SE ++          
Sbjct: 335 SELERSNDYLQNANKKLKELDRLKNDFVSMVSHELKTPLTAMKTSSEFLRESECSREIKE 394

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
              E  + I R+ +    +V+DLLDIS+IESGKM    E V++ E +  ++  V  +A +
Sbjct: 395 ---EMLDLIIRNIDRQARMVDDLLDISRIESGKMKFTPEDVNIKEIIEISLHNVTKHAKD 451

Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
           K I I  +  +++P I  D   + +I +N+L+NAI FTP  G++ +      +  +   +
Sbjct: 452 KSIKIMVNCPDDVPAISTDKDKLIRIFVNLLTNAIKFTPEEGEVTVIVEDHED-YLQTSI 510

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
           +D G+G+   + +K    F Q+ ++   +  GTGLGL + K ++D   GK Y+ S   KG
Sbjct: 511 KDNGIGILEEKRDKIFDKFYQVDSTATRKAGGTGLGLAIIKGIIDGQGGKIYLESETGKG 570

Query: 802 TLIEIIFP 809
           +      P
Sbjct: 571 STFTFRLP 578


>gi|298242207|ref|ZP_06966014.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297555261|gb|EFH89125.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 503

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 96/500 (19%), Positives = 168/500 (33%), Gaps = 39/500 (7%)

Query: 325 TVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
             +  P   ++        Y N  +   TK       E   G   L           +  
Sbjct: 24  VAETIPHIVWMARPDGYREYFNQHWYAFTKTNR----EQVHGNGWLQWVHPDDRGKVLTA 79

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
                           L   +                 +         G   +  D    
Sbjct: 80  WRAAVQTSRLYNVRYLLQNGRT--GAYHRFLSRGLPLKDTHGHVTRWLGTCTDIEDKTSL 137

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF--L 501
            ++ +I   Q  ++ E+   G+ + + +G IL  N A + + G+   +     F  F  +
Sbjct: 138 GKRGQISEAQFYTLFESNILGVVLGDIQGNILDANEAWAHITGWTPTETRSGTFNCFSFM 197

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS-LRIIIKKLPFSSCYSLTMHD 560
                        E++   +    E       K+ + +  L            Y   + D
Sbjct: 198 PSAFREQHLQATQELVETGICLPYESEIE--RKDGRRVPILTGKALCDHEHQTYIAFVLD 255

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I+  K              +    K +F++   HEI+TPLTA+    + +K ++      
Sbjct: 256 ITAQK--------------ELDKRKDEFISLACHEIKTPLTALKLLVQRLKQKQKREEDQ 301

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
            R     + I+    ++  +VNDLLD+SKI  G  +   +   LD  + EAI  VQ    
Sbjct: 302 ERS---LSLIEAQTTILTHLVNDLLDVSKIRQGYFDYADDLFDLDLMIREAIEQVQQATT 358

Query: 681 EKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
                +        P  I+ D   ++Q+  N+L NAI ++P    + I    + N  + +
Sbjct: 359 TH--TLCFHVPEAGPIHIVGDKYKLEQVVTNLLCNAIKYSPQAHDVDIFLGTSENAAI-I 415

Query: 740 RVRDTGVGMTNYELEKAMKPFGQ-IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           +V+D GVG+           F +   + ++    G GLGL LA  +     G   I S  
Sbjct: 416 QVQDYGVGIPKQYQHTIFNRFDRGAYSQRKGVFPGLGLGLYLAHEIATHYGGDIEIESEE 475

Query: 799 AKGTLIEIIFPLYDTSHPHD 818
            KGT   +  PL     PH+
Sbjct: 476 GKGTTFSVHLPL-----PHE 490



 Score = 44.2 bits (103), Expect = 0.086,   Method: Composition-based stats.
 Identities = 18/149 (12%), Positives = 35/149 (23%), Gaps = 2/149 (1%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            W     GY +  ++           ++ G                       + +  Y 
Sbjct: 32  VWMARPDGYREYFNQHWYAFTKTNREQVHGNGWLQWVHPDDRGKVLTAWRAAVQTSRLYN 91

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
              L     T  Y       LP+   +   +  R  G              G+  + +F 
Sbjct: 92  VRYLLQNGRTGAYHRFLSRGLPLKDTHGHVT--RWLGTCTDIEDKTSLGKRGQISEAQFY 149

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHL 234
            L E       +   + +I        H+
Sbjct: 150 TLFESNILGVVLGDIQGNILDANEAWAHI 178


>gi|297625139|ref|YP_003706573.1| histidine kinase [Truepera radiovictrix DSM 17093]
 gi|297166319|gb|ADI16030.1| histidine kinase [Truepera radiovictrix DSM 17093]
          Length = 379

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 92/368 (25%), Positives = 171/368 (46%), Gaps = 14/368 (3%)

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
           L + LE + D +A +   G +++ N A+  L G    ++  +     +    P      L
Sbjct: 7   LAAALEVSFDALAAL-EGGRVVAANGALGALVGCAPHELWGRALGSLVRVE-PPAEGGVL 64

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS-------EWKQ 566
             +      Q LE        +E  + L     +        + +  +S         ++
Sbjct: 65  EALR--RAPQPLEGTLTLWGGKELPVELLWRPWRFQGRPVELVAVRGVSLATSAQSALRR 122

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
            +  L       E+ +  + +FL  +SHE+RTPLT++IG+++V+ ++  GPL N +   Y
Sbjct: 123 YQATLERKNSDLERANRVQREFLGILSHELRTPLTSVIGYAQVLGDEIIGPL-NDKQRAY 181

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
           A  I  SG  ++ +++DLLD+S++E+G + L   PV++ E +   ++ V   A  K + +
Sbjct: 182 AETIYTSGLQLMRLIDDLLDLSRLEAGDVALQRRPVAVAELLRAGVAGVGAEARAKGLSV 241

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
                     +  D   + Q+   +LSNA+ FTP GG++ +S     + EV+L VRD G+
Sbjct: 242 TLQPPPEA-ALYGDPARLAQVLGALLSNAVKFTPLGGRVWVSAELRES-EVVLMVRDDGI 299

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+     E    PF  +  S   +  G GLGL LA+ +V+ + G+ ++ S   +G+   +
Sbjct: 300 GIAPEHHEGVFSPFFLVDASSARQHRGAGLGLALARRIVELHGGRIWVASELGRGSTFYV 359

Query: 807 IFPLYDTS 814
             P    +
Sbjct: 360 ALPRAPHA 367



 Score = 45.0 bits (105), Expect = 0.052,   Method: Composition-based stats.
 Identities = 27/247 (10%), Positives = 61/247 (24%), Gaps = 15/247 (6%)

Query: 93  GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPI 152
           G +   +  L   +G    ++ G  L  +  +        +  L +      G  TLW  
Sbjct: 24  GRVVAANGALGALVGCAPHELWGRALGSLVRVEPPAEGGVLEALRRAPQPLEGTLTLW-- 81

Query: 153 EGTNLYVPIDLAALPIYSRNR--EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
                 +P++L   P   + R  E    RG  +    +                      
Sbjct: 82  --GGKELPVELLWRPWRFQGRPVELVAVRGVSLATSAQSALRRYQATLERKNSDLERANR 139

Query: 211 KKGHS--SVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
            +      +  E     +       +     +  L +      + + T    L+   +  
Sbjct: 140 VQREFLGILSHELRTPLTSVIGYAQVLGDEIIGPLNDKQRAYAETIYTSGLQLMRLIDDL 199

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNN------SKESFEYLSHRNHPSLSAYFDEGENLT 322
           L +       ++    +      L         ++   + LS    P   A         
Sbjct: 200 L-DLSRLEAGDVALQRRPVAVAELLRAGVAGVGAEARAKGLSVTLQPPPEAALYGDPARL 258

Query: 323 PETVDKC 329
            + +   
Sbjct: 259 AQVLGAL 265


>gi|320535487|ref|ZP_08035593.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Treponema phagedenis F0421]
 gi|320147679|gb|EFW39189.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Treponema phagedenis F0421]
          Length = 514

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 93/372 (25%), Positives = 166/372 (44%), Gaps = 24/372 (6%)

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFG--YPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           +  +S    I+   GI L+ NRA   L    +   +  +K    F  +   + +   LTE
Sbjct: 12  ISHSSFACMIVTANGIPLAWNRAAENLLPQYFGTGNAKQKSIFDFFNECGITNIFQKLTE 71

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575
             S D+   +E      +   K     +   +    + Y + ++DI++ KQ    +   K
Sbjct: 72  --STDVPIVIE----WMSPSNKDFKATL---EKQQDNNYFIILNDITQQKQHDKLVQSEK 122

Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
           +   K       FLA VSH+IRTP+  IIG  E+++  +     +    EY   I+ S  
Sbjct: 123 EETIKSKKIHKQFLANVSHDIRTPIQTIIGMMELLRTTKL----DQEQKEYIRQINFSAE 178

Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI- 694
           ++L++VND+LD SK+E G M     P  L   +  +I  + +  ++K + I  + +  + 
Sbjct: 179 ILLELVNDILDFSKLEVGSMQFENIPFDLVSLMESSIDFIAIEGHKKGLEILLNMSPALN 238

Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEE------VILRVRDTGVG 747
           P  + D   +KQI LN++ NA+ FT  G   + +      +++      +   + DTG+G
Sbjct: 239 PYFIGDPSRLKQILLNLMKNAVKFTEKGSVTVDVFEAELPDKDGKAMPALYFEIADTGIG 298

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           +T+ + EK    F Q   S   R  GTGLGL ++K ++    G+  +      G++    
Sbjct: 299 ITDEQKEKLFTVFYQTEASVSRRFGGTGLGLAISKNIIKMLNGEIGVKDNKPHGSIFWFK 358

Query: 808 FPLYDTSHPHDC 819
            P+       +C
Sbjct: 359 LPMMQAKK-QEC 369


>gi|84390109|ref|ZP_00991371.1| sensor histidine kinase/response regulator [Vibrio splendidus
           12B01]
 gi|84376763|gb|EAP93638.1| sensor histidine kinase/response regulator [Vibrio splendidus
           12B01]
          Length = 937

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 87/375 (23%), Positives = 161/375 (42%), Gaps = 28/375 (7%)

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
            + Q   +  A    I  +   G+           F + +   + +P T        +++
Sbjct: 168 RLQQYQEVFSAFLVLILGLGLSGV-----------FAFRLMHDVTQPITHM-----KNMV 211

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN 569
           +      L + +   +             +++ +    +           D+ E  ++  
Sbjct: 212 DRIRRGHLDVRIEGKMHGELDSLKNGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQLE 271

Query: 570 ----KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
               +L  AKK A++ +  KS+FLA +SHE+RTPL  +IGF+  +              +
Sbjct: 272 IQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTHLST----SQTD 327

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           Y   I+RS N +L I+ND+LD SK+E+GK+ L   P     ++ E ++L    A+EK + 
Sbjct: 328 YLQTIERSANNLLSIINDILDFSKLEAGKLALENIPFEFQASLEEVVNLQATNAHEKGLE 387

Query: 686 IRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRV 741
           +       +P  ++ D   ++QI  N++ N+I FT  G     + + +    + E+   V
Sbjct: 388 LTLKIDPKVPPGVVGDPLRIQQILTNLVGNSIKFTERGNIDISVELRSQSEDSIELQFMV 447

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
           RDTG+G++  +  +  + F Q   S   R  GTGLGL + + +V    G+  + S   +G
Sbjct: 448 RDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQG 507

Query: 802 TLIEIIFPLYDTSHP 816
           +       L  T  P
Sbjct: 508 STFWFTLRLSTTDMP 522


>gi|83311738|ref|YP_422002.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82946579|dbj|BAE51443.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 638

 Score =  291 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 86/370 (23%), Positives = 156/370 (42%), Gaps = 28/370 (7%)

Query: 457 ILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           I +     + + +     I+ TNRA+ +  G     +  +     +   T       +  
Sbjct: 19  IFDVIPFPVYVADSATYDIICTNRAMRQKVGV----VQGRKCYESVYNQTSPCRFCKMPV 74

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY-SLTMHDISEWKQEK------ 568
           +++ +   +LE     + +++    LR  +               DIS  K  +      
Sbjct: 75  MMAEEGETSLEFE-HFNDRDDHWYQLRETMLTWFDGRRAKYSIAVDISALKGFQNALAEA 133

Query: 569 --------NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
                     L  A   A      KS+FLA +SHEIRTP+ +I+G   ++ ++       
Sbjct: 134 HAELALKNRDLEKAVTQARDAERAKSEFLAVMSHEIRTPMNSILGMVHLLMDRPLAAED- 192

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
               E  + +  SG  +L I+ND+LD S++E+  +     P  L   V   +SL++  A+
Sbjct: 193 ---REKLSVVHDSGAALLGIINDILDFSRLEADGVQFENLPFHLGNTVEGVVSLLRGRAS 249

Query: 681 EKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-VI 738
           EK + +       +P  +  D   ++Q+ +N++ NAI FT  GG I++    + +     
Sbjct: 250 EKDLTLVLDGPAQLPGWVSGDGARLRQVLINLIGNAIKFTDQGG-IVLRLRRSDDGNGYE 308

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
             V DTG+G+   + +   +PF Q   S   R  G+GLGL + K +++A  GK  + ST 
Sbjct: 309 FAVIDTGIGLDAAQAQSLFQPFHQADASISRRFGGSGLGLAICKKLINAQGGKIGVDSTK 368

Query: 799 AKGTLIEIIF 808
             G+      
Sbjct: 369 GLGSRFWFRL 378


>gi|119492448|ref|ZP_01623769.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
 gi|119453114|gb|EAW34283.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
          Length = 1027

 Score =  291 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 76/247 (30%), Positives = 131/247 (53%), Gaps = 9/247 (3%)

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
            +L  AK+ A+  +  KS+FLA +SHE+RTPL AI+GF+++++        +    +Y  
Sbjct: 549 EELKQAKEAADAANKAKSEFLANMSHELRTPLNAILGFTQLMQRDVSLKADH---QQYIK 605

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            +++SG  +L ++ND+L++SKIE+G+  L+     L + +    +L++L A  K + +R 
Sbjct: 606 IVNKSGEHLLGLINDVLELSKIEAGRTTLNETEFDLYQLLCSLETLLKLKAQAKNLSLRF 665

Query: 689 SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIST---THTSNEEVILRVRDT 744
              + +P  I  D   ++Q+ +N+L NAI FT  G  + +            +I  V DT
Sbjct: 666 EIDSQVPPFIKNDENKLRQVLINLLGNAIKFTNKG-NVTLRVINQELEQLNTLIFAVEDT 724

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G G+   E++   K F Q    ++ + EGTGLGL +++  V    GK  I S   KG+  
Sbjct: 725 GPGIPPEEVQDLFKAFKQTKTGRESQ-EGTGLGLRISQNFVQMMGGKITIESEVGKGSCF 783

Query: 805 EIIFPLY 811
               P+ 
Sbjct: 784 SFALPIS 790


>gi|75906423|ref|YP_320719.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
 gi|75700148|gb|ABA19824.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
          Length = 1344

 Score =  291 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 100/703 (14%), Positives = 218/703 (31%), Gaps = 79/703 (11%)

Query: 140  QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199
            +  W   T  W   G       ++   PI          R  G+           A  ++
Sbjct: 546  RVVWLDGTVHW-ASGKGNVFYDEV-GKPI----------RMIGVHQDITERKQAEAKLQK 593

Query: 200  LDKKFSHLHEI----------KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH 249
             +++                 +          + +F        +  +N          H
Sbjct: 594  SEQRLKLALWAGNTGTWDWNLQTNEVIWSDHLFSLFGLAPDTFDVSYEN----FLNLIVH 649

Query: 250  KDDVLKTEKYPLLTSEESSLPEQE-DFHTINLNQYTKKQYFGTLQNNSKESF-----EYL 303
             +D     +  L   E+    + E  F   +            L ++            +
Sbjct: 650  PEDRELLHQSALRAIEQQVPHDIEFRFLYPDGTVGWSLCKGQVLYDDITGEPLQMIGVNM 709

Query: 304  SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEI 362
                  +      E        +D CP   +V          N  F  +T          
Sbjct: 710  DITERKNAEEAVRESNQRLQAIIDNCPAVIYVKDMQERYILVNSEFERITHLTREQV--K 767

Query: 363  AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
                  +         +     +L                IQ+       +T   F   +
Sbjct: 768  NKTNVKIFSPKTARSLSINDQEILSSRTPVQFEEE-----IQFEDGLHTYLTVK-FPLCD 821

Query: 423  QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
               E     G+  +  + +  + ++  +     +++   +D I + +    IL  +R   
Sbjct: 822  ATGEPYAICGVSTDITERKQAQEQIRQQ----AALINVATDAIFVRDLANRILFWSRGAE 877

Query: 483  KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
             L+G+  E+ + K       + + S +   +T  L        E        +E +++ R
Sbjct: 878  NLYGWTAEETVGKLAHELFHKESSSQLEAAVTTTLEQG-SWYGELEQTTKNAQEIIVASR 936

Query: 543  IIIK--KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
              +   +   S    +   +I+E KQ + +    +++            + ++H++    
Sbjct: 937  WTLVHNQFGDSPSILVVNTNITEKKQLELQFYRVQRL-----ESIGTLASGIAHDLNNVF 991

Query: 601  TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
              I+  ++++ ++      + R  E    ++ S     D+V  +L  ++   G+  L   
Sbjct: 992  APIVMIAQLLPSRCKNV--DTRTHELFKTLETSSKRGSDLVKQILTFARGTEGQRIL--- 1046

Query: 661  PVSLDEAVSEAISLVQLYANEKRILIRTSFANN-IPRILADLRSVKQIALNILSNAIHFT 719
             +     + E   ++Q     K I I T    N +  + AD   ++Q+ +N+  NA    
Sbjct: 1047 -LQPGHLLKELAKVIQQTFP-KSIEIITDIPTNTLWMVQADPTQLEQVFMNLAVNARDAM 1104

Query: 720  PSGGQIIIS--------------TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
            P+GG++ I+                    + +++ + DTG G+    LE+   PF     
Sbjct: 1105 PNGGKLTITATNRVIDSTYARMHLESEVGDYIVVTISDTGTGIPPEILERIFDPFFTTK- 1163

Query: 766  SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
                 G+GTGLGL     +V  + G   + S   +GT  ++  
Sbjct: 1164 ---EVGKGTGLGLSTVLGIVKNHGGFVEVASQVGQGTEFQVFL 1203



 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 44/520 (8%), Positives = 136/520 (26%), Gaps = 35/520 (6%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD-ILHIDPNNHIGDLLKRQNTWYGKTT 148
           D  G   +++    +  G    +++   + D +    +           + Q    G+  
Sbjct: 366 DDEGRYVDVNAAACELFGVSRGELLASTIGDFAALEFNFTEA---WQHFREQKQMSGEFQ 422

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           L    GT      + AA+  +  +R  S      I+         +A  +  +++     
Sbjct: 423 LHRPNGT--VRATEFAAVANFIPHRHLS------IIRDVSDRQQAKANLQNSEQRLQLAL 474

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKN------KVSSLTEYYAHKDDVLKTEKYPLL 262
                       + +          L   +      +  S   +   +D     +     
Sbjct: 475 SASSTGMWDWNLQTNEVVWSESMCSLFNIDPQTFNNRFESFVNFIHPEDREFVEQHLMQS 534

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
             + +    +     ++   +          +   +    +      +     +     +
Sbjct: 535 IDQNTICNVEFRVVWLDGTVHWASGKGNVFYDEVGKPIRMIGVHQDITERKQAEAKLQKS 594

Query: 323 PETVDKCPIPFFVYSHGNL--------FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
            +   +  +  +  + G             +     L                 L+  P+
Sbjct: 595 EQ---RLKLALWAGNTGTWDWNLQTNEVIWSDHLFSLFGLAPDTFDVSYENFLNLIVHPE 651

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
             +      +   R+    +        +  +     ++        +   E +   G+ 
Sbjct: 652 DRELLHQSAL---RAIEQQVPHDIEFRFLYPDGTVGWSLCKGQVLYDDITGEPLQMIGVN 708

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
            +  + +  +  +     +L +I++     I + + +   +  N    ++     E +  
Sbjct: 709 MDITERKNAEEAVRESNQRLQAIIDNCPAVIYVKDMQERYILVNSEFERITHLTREQVKN 768

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-C 553
           K         T   ++    EILS       E+           L+++  +         
Sbjct: 769 KTNVKIFSPKTARSLSINDQEILSSRTPVQFEEEIQFEDGLHTYLTVKFPLCDATGEPYA 828

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
                 DI+E KQ + ++     +    +     F+  ++
Sbjct: 829 ICGVSTDITERKQAQEQIRQQAALINVATDAI--FVRDLA 866



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/244 (10%), Positives = 62/244 (25%), Gaps = 18/244 (7%)

Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
           +V+ +  A G+  L+   +      +            +     +  ++           
Sbjct: 240 TVNLLMQARGVRRLVVVGEQGQMQGLVTQTNLLQVLDPLEIVNVIQALEAKVAEQTFQLQ 299

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC-------------SILEATS 462
              ++     +   Q           +  R  E     +              ++ +   
Sbjct: 300 QTNQQLEAEIKQRHQVEESMRQTQKELEFRVAERTAELMQSNARLQQREQQLQALFDHAV 359

Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522
           D I I + EG  +  N A  +LFG    ++L      F                      
Sbjct: 360 DAILIADDEGRYVDVNAAACELFGVSRGELLASTIGDFAALEFN--FTEAWQHFREQKQM 417

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES 582
                          + +             +   + D+S+ +Q K  L ++++  +   
Sbjct: 418 SG---EFQLHRPNGTVRATEFAAVANFIPHRHLSIIRDVSDRQQAKANLQNSEQRLQLAL 474

Query: 583 SHKS 586
           S  S
Sbjct: 475 SASS 478


>gi|295103591|emb|CBL01135.1| PAS domain S-box [Faecalibacterium prausnitzii SL3/3]
          Length = 1044

 Score =  291 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 91/569 (15%), Positives = 197/569 (34%), Gaps = 40/569 (7%)

Query: 272 QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE---TVDK 328
           +      +   +  +     ++     +       ++                       
Sbjct: 199 EYRLKMQDGQYHWFRASAEVIRRLDGSANRIAGIISNIDAEKRSRMQAQRAAAFHRAFTS 258

Query: 329 CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK------ 382
             +  +  +     +            + +      GL   L    + + +         
Sbjct: 259 ANLCEYYVNLEKNTFDTFKVEPSLM-TAFEQNHTWDGLVRFLVDNYVVEEDKKSVTDFYN 317

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
              +    +       +   I  + E       +   +       M       E      
Sbjct: 318 RAYITEKLKGLETELRQECRIVLDGEERWVSNVVMRGEIEDSEYAMIFLRDITESKAETA 377

Query: 443 NKRKMEIEVMQLCSILEATS---DGIAIIN-REGIILSTNRAVSKLFG--------YPVE 490
            + +M  +   +  ++++     D   + +         N     ++             
Sbjct: 378 RRMQMASDNASMDLLIKSMVRLLDRFVVCDLENDRYRFYNLQGEMIYAPTGTYHDFVEQV 437

Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL--GSTKEEKLLSLRIIIKKL 548
            +  K        +      +    +   +     E  ++   + K    + L     KL
Sbjct: 438 AVRYKTLEPLAAVDALFSPENIRKNLQGENDIYKFEYCSIDENTYKIASFIPLEWDGTKL 497

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE----SSHKSDFLARVSHEIRTPLTAII 604
             +    L   D+S+ K+ + +   A K A +     S  K++FL+ +SH+IRTP+ AII
Sbjct: 498 VKA---LLASMDVSQEKKAEIESHKALKDAYRAAENASRAKTEFLSNMSHDIRTPMNAII 554

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           G + +            R +E    I +S   +L ++N++LD+++IESG+M+L  E  SL
Sbjct: 555 GLTAIAGANI---ESQDRVVECLGKITKSSRHLLGLINEVLDMARIESGRMSLAEEDFSL 611

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGG 723
            E V   ++L +   +E +  +     +     +  D   ++Q+ +N++SNA+ +TP GG
Sbjct: 612 PELVDNLLTLTKPAIDEHKHQLEVHVEHIEHEAVCGDSLRIQQVFVNLMSNAVKYTPDGG 671

Query: 724 QIIISTTHTSNEE-----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
            I ++     N           + D G+GMT    +   +PF +  + +  + +GTGLG+
Sbjct: 672 NITLTIKEKPNGFSELGCYEFSIEDNGIGMTPEFQKIMFEPFSRADDHRTTKVQGTGLGM 731

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEII 807
            +A+ +V+   G   + S P KGT I + 
Sbjct: 732 AIARNIVNLMNGNIQVESAPNKGTKITVT 760


>gi|262170598|ref|ZP_06038276.1| BarA sensory histidine kinase [Vibrio mimicus MB-451]
 gi|261891674|gb|EEY37660.1| BarA sensory histidine kinase [Vibrio mimicus MB-451]
          Length = 916

 Score =  291 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 87/342 (25%), Positives = 156/342 (45%), Gaps = 19/342 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +F   +   + +P T        ++++      L + +   +        K    +++ +
Sbjct: 180 IFASRLMHDVTRPITHM-----KNMVDRIRRGHLDVRIEGKMHGELDSLKKGINAMAVSL 234

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
               +           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 235 SEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTP 294

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+  +   +          +Y   I++S N +L I+ND+LD SK+E+GK+ L  
Sbjct: 295 LNGVIGFTRQMLKTQLTN----SQTDYLQTIEKSANNLLTIINDILDFSKLEAGKLALEN 350

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P    E + E ++L    A+EK + I       IPR ++ D   ++Q+  N++ N+I F
Sbjct: 351 IPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKF 410

Query: 719 TPSGGQIIISTTHT----SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           T  G  I +S           ++   VRDTG+G++  +  +  + F Q   S   R  GT
Sbjct: 411 TERG-NIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGT 469

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           GLGL + + +V    G+  + S   +G+       L+ T  P
Sbjct: 470 GLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTLRLHTTELP 511


>gi|77359688|ref|YP_339263.1| hybrid sensory histidine kinase BarA [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76874599|emb|CAI85820.1| sensor protein barA [Pseudoalteromonas haloplanktis TAC125]
          Length = 918

 Score =  291 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 89/314 (28%), Positives = 154/314 (49%), Gaps = 16/314 (5%)

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQE 567
             +  +       L +++        +    +S  ++++K            D  E  ++
Sbjct: 209 ATDRLVEGKRETGLNESMIGEFELLREGLNTISYSMVMQKDEMQKNIDQATSDYRETLEQ 268

Query: 568 KN----KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
                 +L+ AKK A+  +  KSDFLA++SHE+RTPL  +IGF+  +         N   
Sbjct: 269 YETQNIQLTMAKKEAQDANRVKSDFLAKMSHELRTPLNGVIGFTRQLHKTPL----NKNQ 324

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            +Y + I+ S N ++ I++D+LD SK+E+G M L      L + V+E ++L+   A++K+
Sbjct: 325 KDYLDTIELSANSLMTIISDILDFSKLEAGAMELESIQFQLRDTVNEVMTLLAPSAHDKQ 384

Query: 684 ILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEE--VIL 739
           + +    +  +P  +  D   +KQ+ +N+LSNAI FT  G  ++ IS     +E   +++
Sbjct: 385 LELSIYISPQVPDHLTGDPTRLKQVLINLLSNAIKFTEKGAIKVDISHRLLDDERTSILV 444

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V DTGVG+   + +     FGQ  +S   +  GTGLGL + K +V+A  GK  + S P 
Sbjct: 445 SVADTGVGIPVDKQDALFTAFGQADSSITRKFGGTGLGLIITKHIVEAMSGKITLNSAPG 504

Query: 800 KGTLIE----IIFP 809
            GT          P
Sbjct: 505 NGTCFTFNGVFRLP 518


>gi|226946335|ref|YP_002801408.1| periplasmic sensory histidine protein kinase [Azotobacter
           vinelandii DJ]
 gi|226721262|gb|ACO80433.1| periplasmic sensory histidine protein kinase [Azotobacter
           vinelandii DJ]
          Length = 830

 Score =  291 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 118/683 (17%), Positives = 224/683 (32%), Gaps = 32/683 (4%)

Query: 155 TNLYVPIDLAALPI-----YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
             L   I+ A  P+      SR+     +  F ++   R   D  + G     +      
Sbjct: 141 DGLMRSIEEAGPPVIAVHFRSRDGYIRSYPFFDVLQ--RDLGDRPSPGYGFYSRADETRN 198

Query: 210 IKKGHSSVEKEKYDIFSQQ----SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
             +        + +    +    +P  H      V  L     H    +     P     
Sbjct: 199 PTREPLWTAPYRDEDGRWRVSSIAPVYHGDFLEGVVGLEIDLEHLLADIGDLGVPWQGHA 258

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
                             +        +   +      +      + +   +G       
Sbjct: 259 MLVDESGNVMLLPGQRGASGDSVVNAPRYLREVGLLLPAAGAEGEIRSALFDGREHLLAW 318

Query: 326 VDKCPIP---FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
                       V     L     +     +      I        L        +  + 
Sbjct: 319 RGISQAGWRLLLVVDKSRLLQPTRALAAHYQKMGYLLIAGLILFHALFLGLWWRRSRRLS 378

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             +    +   +         QW   +                E +          D ++
Sbjct: 379 RELEQPING-IVEMLRHSGRDQWQAGDGPL-----SPLRTSRIEELNAMANAVRSSDRQL 432

Query: 443 NKRKMEIEVMQ--LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
              + E    Q  L  ++E T++ +  I  E  ++  +   ++ F    E +  + F   
Sbjct: 433 QASEAERSRAQRLLEVVMEHTTESLWEIVAEKSLIRVSSRFARRFALDSECVPLEVFNRL 492

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP-FSSCYS---- 555
           +  +    +        S  +    E       +  + + L    + L   +        
Sbjct: 493 VHPDDMERLRQRRESFFS-GMDGVYEVEYRCIDRAGQYVWLLSRGQALEWDARGRVLRSA 551

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
            T  DIS  K  +  L  A   A+  S  KS FL+ +SHE+RTPL A+ GF+++I+ +  
Sbjct: 552 GTHVDISRLKAVEGDLRRATLEAQDASRAKSRFLSSMSHELRTPLNAVQGFAQLIELEVE 611

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
           G   +    EYA  I ++   +  +V+D+LD+S +E  +  LH  PV +   ++    LV
Sbjct: 612 GKPDSGPIGEYAREIVKASRHLTALVDDILDLSTLEGRRQQLHIRPVEVGAMLAGCAELV 671

Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
           Q +  E+++ ++         + AD R ++QI LN+LSNAI +    G+I +     S+ 
Sbjct: 672 QPHIRERQLQLQLIPMCRPLYVQADSRRLQQILLNLLSNAIKYNCPQGRITLGYEVRSD- 730

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            V + V+DTG G+   +  +  +PF ++   +     G+G+GL L   +     G    +
Sbjct: 731 CVRIWVKDTGPGLDAEQQSQLFQPFQRL-GRESSNIPGSGIGLVLCHELASMMNGSMGFY 789

Query: 796 STPAKGTLIEIIFPLYDTSHPHD 818
           S P  G    I  P    + P D
Sbjct: 790 SEPGHGCRFWIDLP--GAAPPED 810



 Score = 39.6 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 17/231 (7%), Positives = 50/231 (21%), Gaps = 7/231 (3%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            W I A   L  +S    +     +  +       +     ++      +          
Sbjct: 457 LWEIVAEKSLIRVSSRFARRFALDSECVPLEVFNRLVHPDDMERLRQRRESFFSGMDGVY 516

Query: 146 KTTLWPIEGTNLYVPIDLAALPI-YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
           +     I+    YV +      + +         R  G               +R   + 
Sbjct: 517 EVEYRCIDRAGQYVWLLSRGQALEWDARGRV--LRSAGTHVDISRLKAVEGDLRRATLEA 574

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
                 K    S    +              ++ +V    +     +   +     +  S
Sbjct: 575 QDASRAKSRFLSSMSHELRTPLNAVQGFAQLIELEVEGKPDSGPIGEYAREI----VKAS 630

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
              +    +      L    ++ +   ++  +  +      + H       
Sbjct: 631 RHLTALVDDILDLSTLEGRRQQLHIRPVEVGAMLAGCAELVQPHIRERQLQ 681


>gi|198283276|ref|YP_002219597.1| integral membrane sensor signal transduction histidine kinase
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218665237|ref|YP_002425863.1| phosphate regulon sensor protein PhoR [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|198247797|gb|ACH83390.1| integral membrane sensor signal transduction histidine kinase
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218517450|gb|ACK78036.1| phosphate regulon sensor protein PhoR [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 442

 Score =  291 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 84/385 (21%), Positives = 158/385 (41%), Gaps = 32/385 (8%)

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             D     R++  +++QL   L+A  D + +++  G +L  N +  +L      D   KP
Sbjct: 85  RRDQEAQHRQLSAQIVQLRDALQAMPDVVVLMDERGQLLWVNPSGIRLLQLQWPDDAGKP 144

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556
              +L                SL L    +   +    E     L          +   +
Sbjct: 145 LAFWLRTPHLRAFLAG-EGPPSLQLPAPADAQQIL---EGMRYPL--------ADAGALV 192

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
              D++  +Q +                + DF+A VSHE+R+PLT + GF E + +    
Sbjct: 193 IFRDVTRIRQLEQV--------------RQDFVANVSHELRSPLTVVRGFLENMLDSPIA 238

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF-EPVSLDEAVSEAISLV 675
              +         +++    +  +V DLL ++++E+ + N    E + +   +   +  +
Sbjct: 239 A--DDEVSSQLRLMEQQTLRMQSLVEDLLSLARMEAAEANPEHCETLMIAAMIHNTLDTL 296

Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
                +KR+ I T+   ++  I A+   +  I  N+L NAI +TP+   + +      + 
Sbjct: 297 APAIVQKRLQIDTALDGDLG-IFAETIDLTSIIRNLLENAIKYTPADRTVSVRWERR-SG 354

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
           ++ L V+DTG G+    L++  + F ++   +  R  GTGLGL + +  V+   G   + 
Sbjct: 355 DLRLVVQDTGDGIAAEHLQRITERFYRVDKGRSRRMGGTGLGLAIVRHAVERYQGYLEVA 414

Query: 796 STPAKGTLIEIIFPLYDT-SHPHDC 819
           S   KGT     FPL+   S P D 
Sbjct: 415 SEVGKGTTFTAHFPLHLARSFPSDS 439


>gi|196231875|ref|ZP_03130731.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
 gi|196223997|gb|EDY18511.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
          Length = 1088

 Score =  291 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 124/840 (14%), Positives = 275/840 (32%), Gaps = 96/840 (11%)

Query: 57  QNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGM 116
            +      T    ++   +   +   +   W+ D        +    + +G    +    
Sbjct: 116 TDISDRPPTASATAQPVELLSQVTHDM--VWDWDLRINHVVYNAAFIELLGEAPAEYHAA 173

Query: 117 R--LCDVSDILHIDPNNHI-GDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNR 173
                  +    I+   HI  + +K   T          +  + YV +D  A  +     
Sbjct: 174 HAWWRQHAHPDDIERILHIYEEAMKTGATRLSYEYRIR-DREDNYVTLDSRACLMRDATG 232

Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH 233
           +    R                   RL +      +     +      Y   + +     
Sbjct: 233 QII--RLLVASRDITNRRKAEEAQARLIRILEATTDYVGMATVDGHPFYINAAGRKMIGI 290

Query: 234 LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293
              +     LT  +    + +  ++       +     +      +  +    Q   + +
Sbjct: 291 DPNEPLDFHLTANHPDWANEILMKEAIPTAIRDGYWRGENALKNHDGREIPISQVLLSHR 350

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGE----NLTPETVDKCPIPFFVYS--HGNLFYANPS 347
               E     +     S     +       N     +       F ++     + YA   
Sbjct: 351 GTDGEVEFLSTIIRDLSERKRDEVERIEWANRYDAAIRASGQVLFDWNSYTNEVTYAGD- 409

Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR-------- 399
              +  Y   +          L+    L   +     ++   D   +    R        
Sbjct: 410 MERVLGYTIAEMAGGLERFRQLIHPADLPIFDDQVQRVINTRDPFHLEFRLRPKNAGYIY 469

Query: 400 -----LHTIQWNRENSLAMTFIPFEKANQFPENMPQNG-------IEPEDVDTRINKRKM 447
                   +    +    + F     A  + +             +     +       +
Sbjct: 470 VEAKGYFFLDRRGQIGRMVGFFADVTARHWAQEALTQSQETLEQRVVERTAELARASAVI 529

Query: 448 EIEVMQLCSI-------LEATSDG------------IAIIN--------REGIILSTNRA 480
           E    Q  ++       L   + G            +  ++        R+G  L     
Sbjct: 530 EDRARQQEAVAQLGQRALSGLALGKLMDEAMKLVQNVLRVDCCSLLALTRDGKDLVVRSQ 589

Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY---LTEILSLDLRQTLEKITLGSTKEEK 537
                G+P      +       Q   +++      + +I +     T   +     K   
Sbjct: 590 A----GWPPNSTGNRISVGRGSQAGYTLLAGEPVIVNDIAAEKRFTTSRAVLDARLKSGI 645

Query: 538 LLSLRIIIKKLP--------------FSSCYSLTMHDI----SEWKQEKNKLSHAKKIAE 579
            ++++     L                 + +  ++ ++     + ++ +  +  A++ AE
Sbjct: 646 SVAVKGSEGPLGVLAAFTMAARAFAQDDAHFLQSVANVLTAAIQRERAEESIRQAREQAE 705

Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639
             S  K++FL+R+SHE+RTPL AI+GF+++++ +  GP       E   ++ R+G  +L 
Sbjct: 706 LASRAKTEFLSRMSHELRTPLNAILGFTQLMETETLGP----SLAESVEHVSRAGKHLLS 761

Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN---IPR 696
           ++N++LDIS+I++G+  L  EP+ +   +SEAI  +Q  A    I +    A       +
Sbjct: 762 LINEVLDISRIDAGRFALSPEPIEVHGFLSEAIESIQPLATRHVIPVTLEPATAEMPPLQ 821

Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKA 756
           +LAD + V Q+  NILSNA+ +    G++ +S        + + + DTG G+   +L + 
Sbjct: 822 VLADRQRVHQVMYNILSNAVKYNRINGRVTVSYRV-DGPRIRITIADTGRGIEPEKLSRL 880

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
             PF ++  ++    EG+G+GL L++ +V+A  G+ ++ S   +G+   +  P  D   P
Sbjct: 881 FLPFERL-GAESTDIEGSGIGLALSRGIVNALHGELHVESRVGEGSTFWLTLPRADEISP 939



 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 44/535 (8%), Positives = 147/535 (27%), Gaps = 33/535 (6%)

Query: 76  FDP---IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-N 131
           FDP       +   W ++  G     ++      G  +   +             +   +
Sbjct: 8   FDPRTFDDLPM-MVWVVEPSGAAAYFNKATLAFAGYESPVTLARDWFASVHEEEKESYAD 66

Query: 132 HIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNR--- 188
            I + L+    +         +  +    +   + PI+     FSG         +R   
Sbjct: 67  TIRNALQAHQGFA-IEYRRRNDLGDYR-RVTEHSSPIFGPKGVFSGLMSVLTDISDRPPT 124

Query: 189 --VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY 246
                 P  L  ++        +++  H        ++  +     H             
Sbjct: 125 ASATAQPVELLSQVTHDMVWDWDLRINHVVYNAAFIELLGEAPAEYH---AAHAWWRQHA 181

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
           +    + +       + +  + L  +        N  T       +++ + +    L   
Sbjct: 182 HPDDIERILHIYEEAMKTGATRLSYEYRIRDREDNYVTLDSRACLMRDATGQIIRLLVAS 241

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365
              +     +E +      ++            G+ FY N +   +      + ++    
Sbjct: 242 RDITNRRKAEEAQARLIRILEATTDYVGMATVDGHPFYINAAGRKMIGIDPNEPLDFHLT 301

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
            +        ++    + +     D      +A    ++ +    + ++ +         
Sbjct: 302 ANH---PDWANEILMKEAIPTAIRDGYWRGENA----LKNHDGREIPISQVLLSHRGTDG 354

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSKL 484
           E    + I  +  + + ++ +      +  + + A+   +   N     +      + ++
Sbjct: 355 EVEFLSTIIRDLSERKRDEVERIEWANRYDAAIRASGQVLFDWNSYTNEVTYAGD-MERV 413

Query: 485 FGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
            GY + ++    + F   +      + +  +  +++               K    + + 
Sbjct: 414 LGYTIAEMAGGLERFRQLIHPADLPIFDDQVQRVINTRDP--FHLEFRLRPKNAGYIYVE 471

Query: 543 II----IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
                 + +            D++     +  L+ +++  E+    ++  LAR S
Sbjct: 472 AKGYFFLDRRGQIGRMVGFFADVTARHWAQEALTQSQETLEQRVVERTAELARAS 526



 Score = 47.7 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/141 (11%), Positives = 41/141 (29%), Gaps = 13/141 (9%)

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
            +     + ++   G     N+A     GY     L + +   + +         +   L
Sbjct: 13  FDDLPMMVWVVEPSGAAAYFNKATLAFAGYESPVTLARDWFASVHEEEKESYADTIRNAL 72

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAK 575
                  +E        + + ++        P    S     + DIS+            
Sbjct: 73  QAHQGFAIEYRRRNDLGDYRRVTEHSSPIFGPKGVFSGLMSVLTDISDRPPT-------- 124

Query: 576 KIAEKESSHKSDFLARVSHEI 596
                 ++   + L++V+H++
Sbjct: 125 ---ASATAQPVELLSQVTHDM 142


>gi|83646635|ref|YP_435070.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83634678|gb|ABC30645.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 659

 Score =  291 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 82/360 (22%), Positives = 161/360 (44%), Gaps = 27/360 (7%)

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
            II  +  I+ ++  V+ L             T  L +N    + + + ++ +  +    
Sbjct: 161 VIIEGQQRIVYSSFTVAALL---------MFLTYLLIRNMARSIANPIEQL-TAGVELIK 210

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN--KLSHAKKIAEKESS 583
                    + + L L     +L  S        + +  +Q ++   +  A+  AE  S 
Sbjct: 211 NGDYRTRAPDIRGLELS----RLRNSINQLAVALEKASVEQTEHLGMIETARNEAESASK 266

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
            KS+FLA +SHE+RTP+  ++G  ++++  +     +    EY +   RS   ++ I++D
Sbjct: 267 AKSEFLAIMSHELRTPMNGVLGMLQLLQETQ----QDEEQKEYTHVAMRSTEHLIAIIDD 322

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR--ILADL 701
           +LD SKIE G++++     +L   V E ++  +    EK +L+   +   +    + AD 
Sbjct: 323 ILDFSKIERGRLSIDPIEFNLRALVEETLNAFRPQVEEKGLLLHQEYEGELQDALVTADP 382

Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTS--NEEVIL--RVRDTGVGMTNYELEKAM 757
             ++Q+  N+++NAI FT  G  I +         ++V     V D+G+G+   +  +  
Sbjct: 383 ARIRQVLANLINNAIKFTAEG-YIRVHANWEEIGADKVCFTCEVEDSGIGIAPEQQRRMF 441

Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
             F Q   S   R  GTGLGL +AK +++   G+ ++ S   KG+  +    L+    P+
Sbjct: 442 SSFQQADQSNSRRYGGTGLGLAIAKRLLELMEGEIFVESESGKGSCFKFALTLHYRRSPN 501


>gi|42528002|ref|NP_973100.1| sensor histidine kinase/response regulator [Treponema denticola
           ATCC 35405]
 gi|41819047|gb|AAS13019.1| sensor histidine kinase/response regulator [Treponema denticola
           ATCC 35405]
          Length = 676

 Score =  291 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 91/376 (24%), Positives = 168/376 (44%), Gaps = 23/376 (6%)

Query: 461 TSDGIAIINREGIILSTNRAVSKLFG---YPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
           ++    I + + + L  +    +L          I  + +   +      +      +  
Sbjct: 20  SNIAYIIFSPDYVPLFWSPEAERLLPDYLIKNTKIRLQDYLKTVLLEEDYIRLSAFIKSN 79

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI 577
                   +     S  ++  L            + + +T+ DI++ K ++  L  A++ 
Sbjct: 80  PKTAAFEAKFDKPSSLSDKTALKFSFTQ---QDDNNFFVTIDDITKQKLKERFLIIARQD 136

Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
           AEK +S +S FLA VSHEIRTP+  IIG  E+I         +    EY   ++ S  ++
Sbjct: 137 AEKANSMRSLFLANVSHEIRTPIQTIIGMMELINETNL----DEEQSEYTRQVNFSAEVL 192

Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR- 696
           L +VND+LD SK+ESG M +     +L ++V + + L+ + A++K + I    ++ IP  
Sbjct: 193 LTLVNDVLDFSKLESGNMTMERTVFNLTDSVEQTVDLISMEAHKKGLEIVVDISDKIPDF 252

Query: 697 ILADLRSVKQIALNILSNAIHFTPSG-GQIIISTTHTSNEE---------VILRVRDTGV 746
           I  D   ++Q+ LN + NA+ FT +G   + +     +N +         ++  V DTG+
Sbjct: 253 IYGDPARLQQVLLNFVKNAVKFTETGYVSVSVKLVFENNSDDPYAAKHFFILFEVADTGI 312

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+ N +  K    F Q   +   +  GTGLGL ++K ++    G+  I     +G++   
Sbjct: 313 GVNNEQKSKIFNSFYQGNAAINRKYGGTGLGLAISKNIITMMKGQIGIKDNIPRGSVFWF 372

Query: 807 IFPLYDT--SHPHDCI 820
             PL  +    PH+ I
Sbjct: 373 KIPLVPSKKKAPHESI 388


>gi|290510052|ref|ZP_06549422.1| phosphate regulon sensor protein phoR [Klebsiella sp. 1_1_55]
 gi|289776768|gb|EFD84766.1| phosphate regulon sensor protein phoR [Klebsiella sp. 1_1_55]
          Length = 431

 Score =  291 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 74/427 (17%), Positives = 155/427 (36%), Gaps = 37/427 (8%)

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             +L       I     L  + W     L +         +        G+    +  + 
Sbjct: 33  WFLLAAVTGLLIWHFWNLMRLSW----WLWVDRSMTPPPGRGSWEPLLYGLHQMQMRNKK 88

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            +R++   + +  S  E+  D + +   EG I   N    ++      D   +     L 
Sbjct: 89  RRRELGSLIKRFRSGAESLPDAVVLTTEEGAIFWCNGLAQQILNLRWPDDSGQNILNLLR 148

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
                    +   +   D  + L  +   +        L I +        + +   D++
Sbjct: 149 YP------EFANYLKQRDFSKPLNLVLNNARH------LEIRVMPYTDKQ-WLMVARDVT 195

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  Q +                + +F A VSHE+RTPLT + G+ E+++ Q        +
Sbjct: 196 QMHQLEG--------------ARRNFFANVSHELRTPLTVLQGYLEMMQEQVLEGATREK 241

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                + +      +  +V  LL +S+IE+       + + +   +       Q  + EK
Sbjct: 242 A---LHTMREQTQRMEGLVKQLLTLSRIEAAPALAMNDRIDVPMMLRVVEREAQTLSQEK 298

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           +  +  +    + ++L +   ++    N++ NA++ TP G +I +S   T        V 
Sbjct: 299 Q-TLIFTVDEQL-KVLGNEEQLRSAISNLVYNAVNHTPPGTEIRVSWQRTPQG-ARFSVE 355

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G G+    + +  + F ++  ++  +  G+GLGL + K  V+ +  +  I ST  KGT
Sbjct: 356 DNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHAVNHHDSRLEIDSTVGKGT 415

Query: 803 LIEIIFP 809
               + P
Sbjct: 416 RFSFLLP 422


>gi|89893099|ref|YP_516586.1| hypothetical protein DSY0353 [Desulfitobacterium hafniense Y51]
 gi|89332547|dbj|BAE82142.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 585

 Score =  291 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 71/249 (28%), Positives = 135/249 (54%), Gaps = 3/249 (1%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           + + ++ +L     + +++S +K+DFLA VSHE+RTPLTAII F+E++  ++     +  
Sbjct: 330 QLQIKQIQLEKVNTLLKEDSQYKADFLAMVSHELRTPLTAIIIFAEILLKKKRFEDSSEE 389

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
            I     I  +  ++L ++N++LD++++E+G+ +L  E V L + ++    +++  A   
Sbjct: 390 QI--LCEIKENSEVLLHMINNILDLARLETGRNSLSIETVDLVDVINNVECVIRPLAQRN 447

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-TSNEEVILRV 741
            I +       +P I  D   V++I  N+  NAI FTP GG++ I  +       V + V
Sbjct: 448 DIHLTARVERGVPLIQGDYEKVRRIIENLAGNAIKFTPLGGKVNIQASLAEDPHYVKITV 507

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
           +D G+G++        + F Q+ +S   +  G+GLGL LAK + + + G   + S   KG
Sbjct: 508 QDDGIGISKENQAHIFEKFIQVDSSSSRQYNGSGLGLALAKELTELHGGVISVESDLNKG 567

Query: 802 TLIEIIFPL 810
           +   ++ P+
Sbjct: 568 STFIVLLPI 576


>gi|219666355|ref|YP_002456790.1| histidine kinase [Desulfitobacterium hafniense DCB-2]
 gi|219536615|gb|ACL18354.1| histidine kinase [Desulfitobacterium hafniense DCB-2]
          Length = 582

 Score =  291 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 71/249 (28%), Positives = 135/249 (54%), Gaps = 3/249 (1%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           + + ++ +L     + +++S +K+DFLA VSHE+RTPLTAII F+E++  ++     +  
Sbjct: 327 QLQIKQIQLEKVNTLLKEDSQYKADFLAMVSHELRTPLTAIIIFAEILLKKKRFEDSSEE 386

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
            I     I  +  ++L ++N++LD++++E+G+ +L  E V L + ++    +++  A   
Sbjct: 387 QI--LCEIKENSEVLLHMINNILDLARLETGRNSLSIETVDLVDVINNVECVIRPLAQRN 444

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-TSNEEVILRV 741
            I +       +P I  D   V++I  N+  NAI FTP GG++ I  +       V + V
Sbjct: 445 DIHLTARVERGVPLIQGDYEKVRRIIENLAGNAIKFTPLGGKVNIQASLAEDPHYVKITV 504

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
           +D G+G++        + F Q+ +S   +  G+GLGL LAK + + + G   + S   KG
Sbjct: 505 QDDGIGISKENQAHIFEKFIQVDSSSSRQYNGSGLGLALAKELTELHGGVISVESDLNKG 564

Query: 802 TLIEIIFPL 810
           +   ++ P+
Sbjct: 565 STFIVLLPI 573


>gi|86360952|ref|YP_472839.1| two-component sensor histidine kinase protein [Rhizobium etli CFN 42]
 gi|86285054|gb|ABC94112.1| probable two-component sensor histidine kinase protein [Rhizobium
            etli CFN 42]
          Length = 1211

 Score =  291 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 102/790 (12%), Positives = 226/790 (28%), Gaps = 85/790 (10%)

Query: 79   IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL- 137
                VR  W+++  G     ++                    V D    D    I +LL 
Sbjct: 453  DAVPVR-IWSVEPAGGSIYFNKRYQD------------HFRAVIDDFDADGEPRIDELLQ 499

Query: 138  -------------------KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGF 178
                               +       +      +G  +Y   +    P    + +    
Sbjct: 500  QLIHPDEAADVQRTLSNCFESGGGAAMRFRWLEKDG--IYRWAECRVEPRRDEDGKVV-- 555

Query: 179  RGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK----------GHSSVEKEKYDIFSQQ 228
            + +G+      +       +  +++ S L ++                  K   D F   
Sbjct: 556  QWYGVSLDIDDEVRALEALRDRERELSQLVDMVPVQIRRLTPTGEPVFFNKRLIDFFGVD 615

Query: 229  SPPPHLRMKNKVSSLTEYYAHKDDV-LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287
                     +++SS+     H DD     E      +       +      +        
Sbjct: 616  VGDMDRAGMSRLSSVIHTLVHPDDAPRLLETVHRSLASGDPFTIKYRMRRFDGTYRWVDG 675

Query: 288  YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN----LTPETVDKCPIPFF-VYSHGNLF 342
                L++ +    ++              E          + VD  P   + +   G   
Sbjct: 676  RAEPLRDQNGAIVQWYVISVDIDDEMRAQEALRNREHELSQLVDMVPSLLWRLNPEGAPT 735

Query: 343  YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT 402
            + N   +        +  +        L    +  ++A                 ++ + 
Sbjct: 736  FFNKRLIDFLGLDVAETEKPGMSRLAALIDVAVHPDDAESLAEALNHSLATGERFSKQYR 795

Query: 403  IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
            ++        +        ++    +   G+  +  D    +  +      L  I+E   
Sbjct: 796  LRRADGVYRWLKGSAEPLRDESGRIVQWYGLSHDIDDQLRIEEALRERERSLWQIVETLP 855

Query: 463  DGIAIINREGIILSTNRAVSKLFGYPVEDILRK-------PFTVFLEQNTPSVMNHYLTE 515
              I     +G  +  N  +    GY +ED+               +  +  + +      
Sbjct: 856  IMIDCAAPDGEPVYRNPQLRDFLGYKLEDLDGTGKSRLAGTLDAGVHPDDLADVKEKYAH 915

Query: 516  ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS----LTMHDISEWKQEKNKL 571
             L+        +       +     +      +           +   DI    + + +L
Sbjct: 916  SLATGEP--YARRHRLRRFDGDYRWVETRAAPMRDGEGAIVQWNVICLDIDGEVRAQEEL 973

Query: 572  SHAKKIAEKESSHKS--DFLARVSHEIRTPLTAIIGFSEVIKNQR-FGPLGNPRYIEYAN 628
               ++   + S   S  +  A ++HE+  PL A++  S   +      P    R      
Sbjct: 974  RLTQEGLARASQAASLAELSASIAHEVNQPLAAVVANSHACQRWLTADPPNMERAQRTVE 1033

Query: 629  YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
             I R  N   ++V  +  + K  + K        +L   + E  SL+   A  + + I  
Sbjct: 1034 RIIRDANSAAEVVGRIRALFKQSADK----RVQTTLSNVIDEVRSLIADEAWRRGVRIDV 1089

Query: 689  SFANNIPRILADLRSVKQIALNILSN---AIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
               +++P I  D   ++Q+ +N++ N   A+  T S   + I +    N  V   +RD G
Sbjct: 1090 DVDDSLPSIALDRIQIQQVLINLIRNGIEALDATTSDRVVEIRSHLVGNA-VQTEIRDRG 1148

Query: 746  VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
             G+     EK  +PF     S      G G+GL + +++V+ + G+ +       G  + 
Sbjct: 1149 RGI--EFPEKMFEPFFSTKES------GMGMGLAICRSIVELHGGRLWAEKNQPHGATLI 1200

Query: 806  IIFPLYDTSH 815
               P+   + 
Sbjct: 1201 FSLPVETKAA 1210



 Score =  151 bits (381), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 47/530 (8%), Positives = 134/530 (25%), Gaps = 41/530 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKM-------IGMRLCDVSDILHIDPNNH-IGDLL 137
            W +  +G     ++ +   +G             +   L  +            +   L
Sbjct: 326 VWRLRPNGEPTFFNKRMIDFLGIDVADSDRPDMSRLEAVLQAIVHPDDTAAFRESLSHCL 385

Query: 138 KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG 197
                +  +  L   +G  +Y  +   A P+  +       + +G+ H            
Sbjct: 386 VTGENFAMRYRLRRADG--VYRWMSSRAEPMRDQAGNIV--QWYGLCHDIDDQVHAEEAL 441

Query: 198 KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP----------PPHLRMKNKVSSLTEYY 247
           +R +++   + +         +                           + ++  L +  
Sbjct: 442 RRSEQQLQQMIDAVPVRIWSVEPAGGSIYFNKRYQDHFRAVIDDFDADGEPRIDELLQQL 501

Query: 248 AHKDDVLKTEKY-PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
            H D+    ++              +  +   +      +      ++   +  ++    
Sbjct: 502 IHPDEAADVQRTLSNCFESGGGAAMRFRWLEKDGIYRWAECRVEPRRDEDGKVVQWYGVS 561

Query: 307 NHP----SLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIE 361
                         + E    + VD  P+    +   G   + N   +        D   
Sbjct: 562 LDIDDEVRALEALRDRERELSQLVDMVPVQIRRLTPTGEPVFFNKRLIDFFGVDVGDMDR 621

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                 + +    +  ++A + +                + ++        +        
Sbjct: 622 AGMSRLSSVIHTLVHPDDAPRLLETVHRSLASGDPFTIKYRMRRFDGTYRWVDGRAEPLR 681

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
           +Q    +    I  +  D    +  +     +L  +++     +  +N EG     N+ +
Sbjct: 682 DQNGAIVQWYVISVDIDDEMRAQEALRNREHELSQLVDMVPSLLWRLNPEGAPTFFNKRL 741

Query: 482 SKLFGYPVEDI-------LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
               G  V +        L     V +  +    +   L   L+   R    K       
Sbjct: 742 IDFLGLDVAETEKPGMSRLAALIDVAVHPDDAESLAEALNHSLATGER--FSKQYRLRRA 799

Query: 535 EEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEK 580
           +     L+   + L   S   +      HDI +  + +  L   ++   +
Sbjct: 800 DGVYRWLKGSAEPLRDESGRIVQWYGLSHDIDDQLRIEEALRERERSLWQ 849



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 42/331 (12%), Positives = 91/331 (27%), Gaps = 16/331 (4%)

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
            S+ +  PE +  + + L  +     F  L   +      L+  +         E E   
Sbjct: 256 ASQFAGDPESQKHNQVMLQLFLAISAFSALIVAAISRQHQLAVLSLRQSVDALSEREREL 315

Query: 323 PETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVD-DIEIAGGLSTLLDAPKLSDNNA 380
            + VD  P   +    +G   + N   +        D D      L  +L A    D+ A
Sbjct: 316 SQLVDMVPSHVWRLRPNGEPTFFNKRMIDFLGIDVADSDRPDMSRLEAVLQAIVHPDDTA 375

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
                L     T    + R + ++        M+       +Q    +   G+  +  D 
Sbjct: 376 AFRESLSHCLVTGENFAMR-YRLRRADGVYRWMSSRAEPMRDQAGNIVQWYGLCHDIDDQ 434

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG--YPVEDILRKP-- 496
              +  +     QL  +++A    I  +   G  +  N+     F       D   +P  
Sbjct: 435 VHAEEALRRSEQQLQQMIDAVPVRIWSVEPAGGSIYFNKRYQDHFRAVIDDFDADGEPRI 494

Query: 497 ---FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553
                  +  +  + +   L+          +        K+         ++       
Sbjct: 495 DELLQQLIHPDEAADVQRTLSNCFESGGGAAMRF--RWLEKDGIYRWAECRVEPRRDEDG 552

Query: 554 ----YSLTMHDISEWKQEKNKLSHAKKIAEK 580
               +     DI +  +    L   ++   +
Sbjct: 553 KVVQWYGVSLDIDDEVRALEALRDRERELSQ 583


>gi|229084578|ref|ZP_04216848.1| hypothetical protein bcere0022_12120 [Bacillus cereus Rock3-44]
 gi|228698728|gb|EEL51443.1| hypothetical protein bcere0022_12120 [Bacillus cereus Rock3-44]
          Length = 450

 Score =  291 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 80/371 (21%), Positives = 153/371 (41%), Gaps = 39/371 (10%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            ++ E  QL SIL + +DG+  +N+EG ++  N           E+       + L ++ 
Sbjct: 108 ALQQEKEQLSSILSSMADGVVTLNQEGEVVVINPPAEHFLQVWQEEK-----ELELSRSL 162

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
           P  +      ++  + +Q +E        +   + L   +            + D++E +
Sbjct: 163 PPELVELFHLVVESEQQQVIEINLQ----KGNYVVLMTPLYNQTKIRGAVAVLRDMTEER 218

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + +                + DF+A VSHE+RTP+  + G+SE I +            E
Sbjct: 219 RLE--------------KMRQDFIANVSHELRTPMVMLQGYSEAILDDVVQT--KEEINE 262

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           +   I      +  +VN+LLD++++ESG + LH   V +   V +     Q  A +K + 
Sbjct: 263 FVQIIYDESVRLGRLVNELLDLARMESGHVELHISEVDIHPFVEKIGRKFQGIAQDKGVQ 322

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +   F N +     D   ++Q+  N++ NAI  T +GG + +     +N  +I  V+D+G
Sbjct: 323 LTVDFRNQVVEHPFDPDRMEQVLTNLIDNAIRHTDAGGHVKLVIDTKNNG-LIFEVQDSG 381

Query: 746 VGMTNYELEKAMKPFGQIPNS-------QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
            G+   ++      F +   +           G        +AK +V  + GK  I S  
Sbjct: 382 AGIPEEDIPFLFDRFYKADKARTRGKTGGTGLGL------AIAKNIVQGHDGKVSISSVV 435

Query: 799 AKGTLIEIIFP 809
            +GT+  +  P
Sbjct: 436 GEGTIFSVYLP 446


>gi|152992222|ref|YP_001357943.1| hypothetical protein SUN_0627 [Sulfurovum sp. NBC37-1]
 gi|151424083|dbj|BAF71586.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 535

 Score =  291 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 86/249 (34%), Positives = 138/249 (55%), Gaps = 6/249 (2%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +++Q    L+ +KK+AE+ +  KS FLA +SHEIRTPL AI GF ++++        +  
Sbjct: 144 QYRQMHEDLARSKKLAEEATEQKSRFLANMSHEIRTPLNAITGFIKLLEENE----KDET 199

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
            ++Y   ++ S   +L I+ND+LDISKIESG + +     +  E +     L Q  A EK
Sbjct: 200 KLKYLKIVENSSESLLQIINDILDISKIESGNLMIEPYNFNPYEDLIMIAELFQTRAAEK 259

Query: 683 RILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
            I+ +  + NN+P+IL  D   +KQI  N+LSNAI FTP G  +     +  N ++ +RV
Sbjct: 260 NIIFQIRYNNNMPKILFGDALRIKQIFTNLLSNAIKFTPEGSVVKCIIWYK-NGQLNIRV 318

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
           +D G+G++  + +   +PF Q  +S      GTGLGL ++  +     G   + S   KG
Sbjct: 319 KDYGIGISEKKQKAIFEPFMQADSSTVRNYGGTGLGLSISLELTRMLGGTLTLKSEKEKG 378

Query: 802 TLIEIIFPL 810
           ++  +  PL
Sbjct: 379 SIFTLSIPL 387


>gi|294508093|ref|YP_003572151.1| sensory box sensor histidine kianse/respons regulator [Salinibacter
           ruber M8]
 gi|294344421|emb|CBH25199.1| sensory box sensor histidine kianse/respons regulator [Salinibacter
           ruber M8]
          Length = 941

 Score =  291 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 106/744 (14%), Positives = 236/744 (31%), Gaps = 83/744 (11%)

Query: 116 MRLCDVSDILHIDPNNHIGDLLKRQNTWYG-KTTLWPIEGTNLYVPIDLAALPIYSRNRE 174
               +V      +        L+ + +  G    L   +G    V  ++   P  ++N  
Sbjct: 91  RTFFEVFADPDDEWRTAFLRSLEEKGSRRGYGQRLSQPDGPTYQVDWEV--RPWQTKNGS 148

Query: 175 FSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL 234
             G     I      +   + L +++D +F  L         +  +            ++
Sbjct: 149 ERGVLLSVI--DRTEERHAKGLRRQVDHRFDKLVGTISEGVLLMDDTGVFRDGNEAAQNI 206

Query: 235 --RMKNKVSSLT------EYYAHKDDVLKTEKYPLLTSEESSLPEQEDF---HTINLNQY 283
             R  +++                   L   ++P   +     P QE+    +  +    
Sbjct: 207 LGRSLDEIIGSRFDDDIWNGLREDGSPLPNVEFPFWRAYVEREPVQEEVMGVYPPDAPPR 266

Query: 284 TKKQYFGTLQNNSKESF-----EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS- 337
             +     L  + +E+       +    +            +L    +        V+S 
Sbjct: 267 WIRVNAQPLFRSGQEAPYAVLVSFDDITDERLKEEALQTSRDLLSSVLSSSLDGIIVFSA 326

Query: 338 ----HGNL-----FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388
                  +        NP    L +  + D +    G+    D P+  +    +      
Sbjct: 327 IRSAGDTIADFECVLVNPQAEKLFESTAEDIV----GMRLREDMPRQEEKGLFEAYREVV 382

Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
                        T        +    +  +  N             +  D +  +R++ 
Sbjct: 383 ETGEPAEMEVHYDT----DGQDVWFQVMAVKVENG------VAVTYRDITDRKEAERQIR 432

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
            +      +L+   D I   + +G I+  N++  +L G+  E++L       L       
Sbjct: 433 EQAQ----LLDKARDAILAHDLDGRIVYWNKSAERLTGWSKEEVLGAQAHDCLYAPNEEG 488

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQ 566
                 E +  +   T E        EE+++  R  + +          +   DI+E K+
Sbjct: 489 TLQQCHETMMAEGEWTGELHMRTKDDEERIVESRWSLVRDSTGEPKHVLVINTDITERKR 548

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
            +++   ++++           +  ++H++   L  I    +V+K +      + +  + 
Sbjct: 549 LESQFLRSQRM-----ESLGRLVGGIAHDLGNLLVPITLGVKVLKRRVDDT--DDKVDQT 601

Query: 627 ANYIDRSGNLVLDIVNDLLDISK-IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
            + I +S     D+V  +L  ++ +E  ++ L        E + E +  +      + + 
Sbjct: 602 LSMIQKSAERGSDMVEQVLAFARGVEGERVALQP------ELIVEEVEEMTTETFPEDVE 655

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT--------------H 731
           +      ++  ++ D   ++Q+ +N+  NA    P GG + +                  
Sbjct: 656 VHIRTDADLRPVVGDATQIQQVLMNLCVNARDAMPDGGTLTVEARNVDFTEREARRNIEA 715

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
                V + VRDTG GM +   +K  +PF          GEGTGLGL  A +++ ++ G 
Sbjct: 716 EPGGYVCIEVRDTGTGMPDDVADKIFEPFFTTK----EEGEGTGLGLSTAYSIIQSHDGF 771

Query: 792 FYIFSTPAKGTLIEIIFPLYDTSH 815
             + S    GT   I  P  D   
Sbjct: 772 MDVESEEGVGTTFWIYLPAADEEA 795



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 38/378 (10%), Positives = 96/378 (25%), Gaps = 20/378 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRL-CDVSDILHIDPNN------HIGDLLKRQN 141
           +D  G  ++ +E     +G    ++IG R   D+ + L  D +               + 
Sbjct: 190 MDDTGVFRDGNEAAQNILGRSLDEIIGSRFDDDIWNGLREDGSPLPNVEFPFWRAYVERE 249

Query: 142 TWYGKTT-LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
               +   ++P +    ++ ++   L    +   ++    F  +   R+  +     + L
Sbjct: 250 PVQEEVMGVYPPDAPPRWIRVNAQPLFRSGQEAPYAVLVSFDDITDERLKEEALQTSRDL 309

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV-SSLTEYYAHKDDVLKTEKY 259
                          S  +   D  +            K+  S  E            + 
Sbjct: 310 LSSVLSSSLDGIIVFSAIRSAGDTIADFECVLVNPQAEKLFESTAEDIVGMRLREDMPRQ 369

Query: 260 PLLTSEESSLPEQEDFHTINLN--QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
                 E+     E      +     T  Q         K            +     + 
Sbjct: 370 EEKGLFEAYREVVETGEPAEMEVHYDTDGQDVWFQVMAVKVENGVAVTYRDITDRKEAER 429

Query: 318 GENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
                 + +DK       +   G + Y N S   LT +   + +  A     L      +
Sbjct: 430 QIREQAQLLDKARDAILAHDLDGRIVYWNKSAERLTGWSKEEVL-GAQAHDCLYAP---N 485

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           +   ++                 +   +   +    +        +   E      I  +
Sbjct: 486 EEGTLQQCHETMMAEGEWTGELHM---RTKDDEERIVESRWSLVRDSTGEPKHVLVINTD 542

Query: 437 DVDTRINKRK-MEIEVMQ 453
             + +  + + +  + M+
Sbjct: 543 ITERKRLESQFLRSQRME 560



 Score = 45.0 bits (105), Expect = 0.055,   Method: Composition-based stats.
 Identities = 11/117 (9%), Positives = 33/117 (28%), Gaps = 5/117 (4%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN-HIGDLLKRQNTWYGKTT 148
           D  G +   ++   +  G    +++G +  D     + +       + +  +  W G+  
Sbjct: 449 DLDGRIVYWNKSAERLTGWSKEEVLGAQAHDCLYAPNEEGTLQQCHETMMAEGEWTGELH 508

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +   +  +    ++     +     E        I           +   R  +  S
Sbjct: 509 MRTKD--DEERIVESRWSLVRDSTGEPKHV--LVINTDITERKRLESQFLRSQRMES 561



 Score = 42.3 bits (98), Expect = 0.35,   Method: Composition-based stats.
 Identities = 16/142 (11%), Positives = 41/142 (28%), Gaps = 28/142 (19%)

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-------------------- 493
           L   +EAT   +A+++ +  I++ +RA  ++F    ++                      
Sbjct: 24  LKEFVEATPAPVAMLDDDWRIVTHSRAWLEVFQNEGDETRNPIALDRIESTGQALSAREA 83

Query: 494 ------RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII-- 545
                 ++ F              +L  +     R+   +           +   +    
Sbjct: 84  LPAPTDQRTFFEVFADPDDEWRTAFLRSLEEKGSRRGYGQRLSQPDGPTYQVDWEVRPWQ 143

Query: 546 KKLPFSSCYSLTMHDISEWKQE 567
            K        L++ D +E +  
Sbjct: 144 TKNGSERGVLLSVIDRTEERHA 165


>gi|170025492|ref|YP_001721997.1| phosphate regulon sensor protein [Yersinia pseudotuberculosis
           YPIII]
 gi|169752026|gb|ACA69544.1| PAS/PAC sensor signal transduction histidine kinase [Yersinia
           pseudotuberculosis YPIII]
          Length = 438

 Score =  291 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 66/358 (18%), Positives = 132/358 (36%), Gaps = 35/358 (9%)

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
           +  S  E+  D + I   +G I   N    +L G+   +   +     L     S     
Sbjct: 99  RFRSGAESLPDAVVITTVDGNIFWCNGLAQQLLGFRWPEDNGQHILNLLRYPEFSQYL-- 156

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572
                    +QT  +           +  R++           +   D+++ +Q +    
Sbjct: 157 --------QQQTFSRPLTLQLNNGYYVEFRVMPY---SEGQLLMVARDVTQMRQLEG--- 202

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
                       + +F A VSHE+RTPLT + G+ E++ +Q        +       +  
Sbjct: 203 -----------ARRNFFANVSHELRTPLTVLQGYLEMMHDQELAGPLRDKA---LGTMQE 248

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN-EKRILIRTSFA 691
               +  +V  LL +S+IE+       E V +   +      VQ  +N    I  R +  
Sbjct: 249 QTKRMDGLVKQLLTLSRIEAAPNVDLNERVDIPLMLKILQHEVQALSNGRHEITFRVN-- 306

Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751
            +  ++  +   ++    N++ NA++ TP G +I +    T       +V D G G+   
Sbjct: 307 -DQLKVFGNEDQLRSAVSNLVYNAVNHTPEGTKIEVCWQQTPQG-AQFQVSDNGPGIPPE 364

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            + +  + F ++  ++  +  G+GLGL + K  +  +  +  + S    GT      P
Sbjct: 365 HVPRLTERFYRVDKARSRQTGGSGLGLAIVKHALSHHDARLEVMSEIGLGTRFIFTLP 422


>gi|110639716|ref|YP_679926.1| sensor histidine kinase [Cytophaga hutchinsonii ATCC 33406]
 gi|110282397|gb|ABG60583.1| sensor histidine kinase with PAS signal sensor domains [Cytophaga
            hutchinsonii ATCC 33406]
          Length = 1020

 Score =  291 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 92/725 (12%), Positives = 227/725 (31%), Gaps = 46/725 (6%)

Query: 112  KMIGMRLCDVSDILHIDPN-NHIGDLLKRQNT--WYGKTTLWPIEGTNLYVPIDLAALPI 168
             +IG  + + +  L        + D+ +      +      +  EG         +   +
Sbjct: 307  DIIGKPIAEAAPELEAQGMITLVKDIYEHGGIANYSEIPITFKKEGVVKDGYYSFSLKAL 366

Query: 169  YSRNREFSGF--RGFGIVHVNRVDNDPRALGKRLDKKFSHLH--------EIKKGHSSVE 218
            Y    +  G    G  +    +      A G RL                +         
Sbjct: 367  YDNTGKIDGILSIGVDVTERVKWRKQIEASGARLKSMIDQTPAPTLVLMGDNLVIEQVNT 426

Query: 219  KEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTI 278
                 +  +++      +        +Y   + + +  E  P   SE   +  +      
Sbjct: 427  SMLKLLGHEENIVGIPLLTLMPELKGQYIWEQVEKVYREGIPFDQSEVR-VSHKRTGMME 485

Query: 279  NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH 338
            +       +        +      +            +E E+     V+      +    
Sbjct: 486  DYYYNIAYRPLKEDGRITGMIQVAIDVTEQVVARKKLEESESRFRALVNASSDVVY---- 541

Query: 339  GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398
                  N  + ++ + +  D +  AG              +         +         
Sbjct: 542  ----RMNADWTVMRELEGRDFLTPAGTAMADWVETYTYREDRALVKATAAAAIEGKRIFE 597

Query: 399  RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458
              H +                  ++    +   G   +    +  +  ++    +   + 
Sbjct: 598  LEHRVLKADGTIGWTFSRAIPILDEQGNIIEWFGSAADITAEKEMQAIIKESEEKFSQLA 657

Query: 459  EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
            +     I   + +G I   N+   +  G+  +    K +   +  +    +       + 
Sbjct: 658  DLVPQIIWTGSSDGFIDYYNKRWYEYTGFDGKAFGDKSWVPVMHPDDVQEVLDCWYGSVK 717

Query: 519  LDLRQTLEKITLGSTKE-EKLLSLRIIIKKLPFSSC----YSLTMHDISEWK----QEKN 569
                   +      + E  +          +   +     +  T  DI E K    + + 
Sbjct: 718  KGTP--YQIELRMKSAETGEYRWFLSKALPIKDKTGVITKWFGTCTDIHEQKTITTKLER 775

Query: 570  KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
             ++   K  ++ +     F    SH+++ P+  I  F+  +++Q    L +   I +   
Sbjct: 776  LVAERTKELQRSNEDLQQFAHVASHDLKEPVRKIKTFAGRLEDQLKDKL-DESAIRFIEK 834

Query: 630  IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
            I+ + N + ++++ +L  S I + K     EPV L+  +    + +++   + + +I+  
Sbjct: 835  INVATNRMSNMIDGVLAYSTINASKQK--PEPVDLNNVLKNIETDLEIPLQKTQGVIQYK 892

Query: 690  FANNIPRILADLRSVKQIALNILSNAIHFTPSG--GQIIISTTHTSNEE---VILRVRDT 744
               N+P +      + Q+  N+++N+I F  +G   QI I + + + +    V + V+D 
Sbjct: 893  ---NLPVLEGAPVLLYQLFYNLINNSIKFARAGVSPQITIVSENMTEQSMNVVRISVQDN 949

Query: 745  GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
            G+G    +  +  + F ++ +  + + EGTGLGL L K +V+ + G     S+   G   
Sbjct: 950  GIGFEPDQAGQIFETFTRLNS--KDKYEGTGLGLSLCKKIVERHGGTILADSSKGNGATF 1007

Query: 805  EIIFP 809
             I  P
Sbjct: 1008 IITLP 1012



 Score =  101 bits (251), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 49/508 (9%), Positives = 141/508 (27%), Gaps = 37/508 (7%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP--NNHIGDLLKRQNTWYGKTTLWPI 152
               ++ L    G  A + IG  L +              I ++   + +  G  +    
Sbjct: 163 FTYANKALLTMWGKTAEEAIGKGLRENGYEEWHAQMHEREIDEIKATKKSIRGTVSFPHA 222

Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212
           E  +      L  +P+ + + E     G                 K+ + +F +L +   
Sbjct: 223 ELGSRMYDYIL--VPVLNESGEVEAIAG--TTRDITDIKRIEENLKQSEARFRNLLQEAP 278

Query: 213 GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY-----------PL 261
             +++ +    +    +             + +  A     L+ +              +
Sbjct: 279 VAATLFRGNDLVIEIANELTQQYWNKGNDIIGKPIAEAAPELEAQGMITLVKDIYEHGGI 338

Query: 262 LTSEESSLPEQEDFHTINLNQ-YTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
               E  +  +++    +    ++ K  +             +            +    
Sbjct: 339 ANYSEIPITFKKEGVVKDGYYSFSLKALYDNTGKIDGILSIGVDVTERVKWRKQIEASGA 398

Query: 321 LTPETVDKCPIP--FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
                +D+ P P    +  +  +   N S L L  ++     E   G+  L   P+L   
Sbjct: 399 RLKSMIDQTPAPTLVLMGDNLVIEQVNTSMLKLLGHE-----ENIVGIPLLTLMPELKGQ 453

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
              + V     +      S    + +           I +    +         +  +  
Sbjct: 454 YIWEQVEKVYREGIPFDQSEVRVSHKRTGMMEDYYYNIAYRPLKEDGRITGMIQVAIDVT 513

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
           +  + ++K+E    +  +++ A+SD +  +N +  +      + +L G            
Sbjct: 514 EQVVARKKLEESESRFRALVNASSDVVYRMNADWTV------MRELEGRDFLTPAGTAMA 567

Query: 499 VFLEQNTPSVMNHYLTEILSLDLR--QTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--- 553
            ++E  T       +    +  +   +  E        +  +         +        
Sbjct: 568 DWVETYTYREDRALVKATAAAAIEGKRIFELEHRVLKADGTIGWTFSRAIPILDEQGNII 627

Query: 554 -YSLTMHDISEWKQEKNKLSHAKKIAEK 580
            +  +  DI+  K+ +  +  +++   +
Sbjct: 628 EWFGSAADITAEKEMQAIIKESEEKFSQ 655



 Score = 75.4 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/311 (11%), Positives = 98/311 (31%), Gaps = 24/311 (7%)

Query: 275 FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA-----YFDEGENLTPETVDKC 329
            + ++   Y  +       +    + E ++      +S        ++ E L     +  
Sbjct: 91  AYVVSGGDYWFRFTAVKQGDLLVVTLENITEAKQGEISLNAALHAAEKQERLYNSITNNT 150

Query: 330 PIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD-APKLSDNNAIKPVMLY 387
           P   +V+    +  YAN + L +    + + I      +   +   ++ +    +     
Sbjct: 151 PDLVYVFGLDYSFTYANKALLTMWGKTAEEAIGKGLRENGYEEWHAQMHEREIDEIKATK 210

Query: 388 RSDRTCIAA-SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
           +S R  ++   A L +  ++        +I     N+  E     G   +  D +  +  
Sbjct: 211 KSIRGTVSFPHAELGSRMYD--------YILVPVLNESGEVEAIAGTTRDITDIKRIEEN 262

Query: 447 MEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           ++    +  ++L+       +    + +I   N    + +     DI+ KP      +  
Sbjct: 263 LKQSEARFRNLLQEAPVAATLFRGNDLVIEIANELTQQYWN-KGNDIIGKPIAEAAPELE 321

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL------LSLRIIIKKLPFSSCYSLTMH 559
              M   + +I          +I +   KE  +       SL+ +               
Sbjct: 322 AQGMITLVKDIYEHGGIANYSEIPITFKKEGVVKDGYYSFSLKALYDNTGKIDGILSIGV 381

Query: 560 DISEWKQEKNK 570
           D++E  + + +
Sbjct: 382 DVTERVKWRKQ 392



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/188 (11%), Positives = 58/188 (30%), Gaps = 25/188 (13%)

Query: 431 NGIEPEDVDTRINK-------RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
                   + +  +          E +     SI   T D + +   +      N+A+  
Sbjct: 113 VVTLENITEAKQGEISLNAALHAAEKQERLYNSITNNTPDLVYVFGLDYSFTYANKALLT 172

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNH-YLTEILSL-----DLRQTLEKITLGSTKEEK 537
           ++G   E+ + K       +   + M+   + EI +                     +  
Sbjct: 173 MWGKTAEEAIGKGLRENGYEEWHAQMHEREIDEIKATKKSIRGTVSFPHAELGSRMYDYI 232

Query: 538 LLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH----AKKIAEKESSHKSDFLAR-- 591
           L+ +   + +       + T  DI++ K+ +  L       + + ++     + F     
Sbjct: 233 LVPV---LNESGEVEAIAGTTRDITDIKRIEENLKQSEARFRNLLQEAPVAATLFRGNDL 289

Query: 592 ---VSHEI 596
              +++E+
Sbjct: 290 VIEIANEL 297



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/198 (12%), Positives = 51/198 (25%), Gaps = 7/198 (3%)

Query: 55  TDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI 114
            D   E        +SE  F         +  W   + G++   ++   +  G       
Sbjct: 634 ADITAEKEMQAIIKESEEKFSQLADLVP-QIIWTGSSDGFIDYYNKRWYEYTGFDGKAFG 692

Query: 115 GMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNRE 174
                 V     +           ++ T Y          T  Y      ALPI  +   
Sbjct: 693 DKSWVPVMHPDDVQEVLDCWYGSVKKGTPYQIELRMKSAETGEYRWFLSKALPIKDKTGV 752

Query: 175 FSGFRGFGIVHVNRVDND----PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP 230
            +  + FG                 L     K+    +E  +  + V         ++  
Sbjct: 753 IT--KWFGTCTDIHEQKTITTKLERLVAERTKELQRSNEDLQQFAHVASHDLKEPVRKIK 810

Query: 231 PPHLRMKNKVSSLTEYYA 248
               R+++++    +  A
Sbjct: 811 TFAGRLEDQLKDKLDESA 828



 Score = 41.2 bits (95), Expect = 0.76,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 49/147 (33%), Gaps = 16/147 (10%)

Query: 447 MEIEVMQLCSILEATSDGIA----IINREGI-----ILSTNRAVSKLFGYPVEDILRKPF 497
           +         + ++ ++GIA    + N +G      IL  N+ +    G    D   K +
Sbjct: 3   LTENKDLFQLVFDSAANGIAVMQSVCNDKGKIDDFSILLFNKYILNWVG--DVDYKGKLY 60

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT 557
           T        + +     ++    +    E   +           R    K        +T
Sbjct: 61  TNVFPMAKENDILGKFIQVAETGITANFEWAYVV---SGGDYWFRFTAVK--QGDLLVVT 115

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSH 584
           + +I+E KQ +  L+ A   AEK+   
Sbjct: 116 LENITEAKQGEISLNAALHAAEKQERL 142


>gi|330890979|gb|EGH23640.1| sensory box histidine kinase [Pseudomonas syringae pv. mori str.
           301020]
          Length = 595

 Score =  291 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 89/427 (20%), Positives = 172/427 (40%), Gaps = 28/427 (6%)

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK--R 445
            + R      A         E    +T  P   A +      + GI  E +         
Sbjct: 193 IARRFGAPIEALAKAADRIGEGDYEVTL-PISSAAEMNLLTRRFGIMAEALRQHQATNID 251

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           ++     +L ++L++  DG+ +I+R+G +   N    +  G+    + +           
Sbjct: 252 ELLAGQQRLQAVLDSIDDGLLMIDRQGHLEHLNPVAQRQLGWDESRLGQSLGDALGRSEL 311

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISE 563
              ++  L         + L         E +LL+  +              + +HD++E
Sbjct: 312 DEQLHLVLRGGTLERAPEDLAIEI---DGESRLLTYSMTPVSHTKGHILGAVMVLHDVTE 368

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            +  +                +S+F+ R SHE+RTP+T  +  +  +  +R       R 
Sbjct: 369 QRAFE--------------RVRSEFVLRASHELRTPVTG-MHMAFGLLQERLHFAPETRE 413

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            +  N +      ++ ++NDLL+ S+ ++G   L   P S++  + EA +  +  A E+ 
Sbjct: 414 ADLLNTVTEEMQRLMQLINDLLNFSRYQNGLQKLKLAPCSIETLLEEARARFEDKALEQD 473

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
           I++       +PR+ AD   ++++  N+L NA+  TP  G I +       E  I+ V D
Sbjct: 474 IVLMLDMQEPMPRLHADQSQLERVLDNLLDNALRHTPQNGLIRLQ-ARRHGERAIISVED 532

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
            G G+   +  +  +PF Q+      +  G GLGL L K +V  + G+  ++S P +GT 
Sbjct: 533 NGEGIAYGQQGRIFEPFVQV----GRKKGGAGLGLALCKEIVQLHGGRMGVYSRPGQGTQ 588

Query: 804 IEIIFPL 810
             +  PL
Sbjct: 589 FYMALPL 595



 Score = 42.7 bits (99), Expect = 0.25,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 69/241 (28%), Gaps = 9/241 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G+L+ ++    + +G    + +G  L D      +D       L+ R  T      
Sbjct: 274 IDRQGHLEHLNPVAQRQLGWDESR-LGQSLGDALGRSELDEQ---LHLVLRGGTLERAPE 329

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
              IE       +  +  P+        G     ++H          +  R +      H
Sbjct: 330 DLAIEIDGESRLLTYSMTPVSHTKGHILGA--VMVLHDVTEQRAFERV--RSEFVLRASH 385

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           E++   + +      +  +    P  R  + ++++TE    +   L  +       +   
Sbjct: 386 ELRTPVTGMHMAFGLLQERLHFAPETREADLLNTVTE-EMQRLMQLINDLLNFSRYQNGL 444

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
              +    +I       +  F                   P L A   + E +    +D 
Sbjct: 445 QKLKLAPCSIETLLEEARARFEDKALEQDIVLMLDMQEPMPRLHADQSQLERVLDNLLDN 504

Query: 329 C 329
            
Sbjct: 505 A 505


>gi|322417554|ref|YP_004196777.1| multi-sensor signal transduction histidine kinase [Geobacter sp.
           M18]
 gi|320123941|gb|ADW11501.1| multi-sensor signal transduction histidine kinase [Geobacter sp.
           M18]
          Length = 510

 Score =  291 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 105/495 (21%), Positives = 210/495 (42%), Gaps = 49/495 (9%)

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH---TIQWNREN 409
             ++++ +E       +LD      +       +   +   +  +A       +   ++ 
Sbjct: 36  GVEALEAVEREQFTLIMLDIKMPRMDGLEVLSRIRSDETPVVMMTAHGSEDIAVDAMKKG 95

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469
           +L     PF   +   +      I+    +    +R+++ E +++ ++L+  +D +  ++
Sbjct: 96  ALDYISKPFSSDDMLQKVERAIKIDRTRKENARLQRQLDEERLKMEAVLQGMADLLLAVD 155

Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
            EG I++T+R    +      D+  +     L+   P       T + + + R  +  + 
Sbjct: 156 LEGRIITTSRQAESVLS-SEGDLRGRTLEEVLKAEVPGGELPARTVLRTGEARLDVAYLL 214

Query: 530 LGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHK 585
           L        + +      L  +    +     + DIS+ K+ + +              K
Sbjct: 215 LI---GGHQVPVLSSAAPLKNAEGELVGSVEIIRDISKLKELEQE--------------K 257

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
            DF++ +SH++++P+TA++G  ++++  + GP+      EY N    S   ++++++ LL
Sbjct: 258 EDFVSMLSHDLKSPITAVVGSIDLVREAKLGPVTGD-QREYLNAAIESCEEMVEMIDTLL 316

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
            I K E+GKM L+F+       V+ +++  Q  A    I + T+  + +P I AD  S  
Sbjct: 317 GIHKFEAGKMKLYFKDEDPAALVNRSVTKFQTMARRGGIRLFTTLPSELPAISADRSSFN 376

Query: 706 QIALNILSNAIHFTPSGGQIIISTTH----------------------TSNEEVILRVRD 743
           +I  N+LSNA+ FTP GG+I +S                            E V +RVRD
Sbjct: 377 RIMGNLLSNAVKFTPEGGEIEVSADLVQEPSAVTGAVPEENYAPQQLPREGEFVRIRVRD 436

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           +GVG+    L      F Q  N +Q +  GTGLGL   +  VDA+ G  +  S P  G++
Sbjct: 437 SGVGIPQESLGSIFDRFVQARNRRQGKTRGTGLGLAFCRKAVDAHNGFIWAESEPGAGSV 496

Query: 804 IEIIFPLYDTSHPHD 818
             ++ P      P +
Sbjct: 497 FTLLLP-AQPEEPEE 510



 Score = 47.3 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/108 (15%), Positives = 32/108 (29%), Gaps = 5/108 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D  G +   S +    + +    + G  L +V              +L+          
Sbjct: 154 VDLEGRIITTSRQAESVL-SSEGDLRGRTLEEVLKAEVPGGELPARTVLRTGEARLDVAY 212

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRAL 196
           L  I G    VP+  +A P+ +   E  G     I+       +    
Sbjct: 213 LLLIGGHQ--VPVLSSAAPLKNAEGELVG--SVEIIRDISKLKELEQE 256


>gi|298249641|ref|ZP_06973445.1| multi-sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297547645|gb|EFH81512.1| multi-sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 895

 Score =  291 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 109/626 (17%), Positives = 215/626 (34%), Gaps = 54/626 (8%)

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
              H   I+  H+   + +    S+QS P H     + +    Y A     L+ +    L
Sbjct: 303 LLLHGRVIRPLHTLAIQHQALPSSEQSIPSHATQLARRADEVGYLARSLIRLERDGLAKL 362

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS--AYFDEGEN 320
              ++ L            Q    +    ++         +   +   +      D    
Sbjct: 363 GELQTLLETSSVVVGSLEPQAVVGKIIREVRRLVDVQAAAVLLPDEQGVLHVLVSDGHNR 422

Query: 321 LTPETVDKCPI-----PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
                +   P             G           L   +    +    G  ++L  P +
Sbjct: 423 RYNYALSLAPENISSSAVLALHSGQPVQ------KLLSTEPAPSLSYDEGFRSVLAVPII 476

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
           S +     ++++R+             + +    +LA       + +             
Sbjct: 477 SRHAGGVVLLVHRTQPQPFNQKEIDLLLTFANYATLAWEHAVLYERSDERLREVA----- 531

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
              +     ++   E  +L +I+E+ SDG+ +   +G +L  N   S + G P+ ++ R 
Sbjct: 532 --RENAQLYQQASEEKQKLEAIMESMSDGLVLTGIDGTVLYANPGASSITGLPITELERH 589

Query: 496 PFTVFL------EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
           P  V                   L    +      +E        + +++ LR       
Sbjct: 590 PIQVLYEALSRSAMEPEECARKMLQATSAEKPELLIELE---PHAQRQVIHLRFFDVGDE 646

Query: 550 FSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
                   L + D++  ++                  K+  L  V HE+RTPL AI G++
Sbjct: 647 AGRTIGRGLLLRDVTREREVDEF--------------KTTLLGAVGHELRTPLAAIKGYA 692

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
             +  +            +   I    + +  +V++LLD+S+ E+G + L   P  L E 
Sbjct: 693 STLLQEDV-TWPIEDQRHFLQTISSKADYMAQLVSNLLDLSRQEAGLLLLKRAPARLQEI 751

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727
           V+  I+          +++ T   +++P +  D   ++ +  N++ NA+ +    G+I I
Sbjct: 752 VTHTIA----ETEHPDVMVTTRIPDDLPLVDIDSGRIEVVLRNLVMNALAYGE--GEIHI 805

Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
           S     N  VI+ V D G G+   EL    + F +  + +Q    GTGLGL + KA ++A
Sbjct: 806 SAKLQENA-VIVAVTDNGPGIAPTELPHVFERFYRAQHGRQRHSGGTGLGLAICKAFIEA 864

Query: 788 NMGKFYIFSTPAKGTLIEIIFPLYDT 813
           +    +  S   +GT I    PL  +
Sbjct: 865 HGTSIWAESAE-QGTTISFALPLPPS 889


>gi|186686077|ref|YP_001869273.1| multi-sensor signal transduction histidine kinase [Nostoc
           punctiforme PCC 73102]
 gi|186468529|gb|ACC84330.1| multi-sensor signal transduction histidine kinase [Nostoc
           punctiforme PCC 73102]
          Length = 886

 Score =  291 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 78/257 (30%), Positives = 142/257 (55%), Gaps = 2/257 (0%)

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
           +     ++ + K  ++ L  AK+ AE  +  K  FL  +SHE+RTPL++I+  +E ++N+
Sbjct: 625 FVALTLEVCDRKSAESALREAKEAAEVANRAKKTFLVNMSHELRTPLSSILEIAEALQNE 684

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
            +G +      ++ N ++ SG  +L+++N +L+++ IES K+ L      + E    ++S
Sbjct: 685 VYGTVT-EEQRQFLNTLESSGKNLLELINQILELTDIESSKIELQLAATFIPELCDSSLS 743

Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-T 732
            V+  A +K I +       +  I  D R ++Q+ +N+LSNAI FT  GG++ I     +
Sbjct: 744 FVKNLALQKNIQLSVQIPEELEPIQVDERRIRQVFINLLSNAIKFTHDGGKVWIEVQPNS 803

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
           +NE +   V DTG+GM + +L +  +PF Q+ N+   R  GTGLGL + + +V+ + G  
Sbjct: 804 TNEYIFFSVVDTGIGMLSDDLFRLFQPFIQVENASTRRSAGTGLGLVMVQKIVELHGGTV 863

Query: 793 YIFSTPAKGTLIEIIFP 809
           +  S   KG+   +  P
Sbjct: 864 HAESQLGKGSRFTVKLP 880


>gi|197119218|ref|YP_002139645.1| PAS/PAS domain-containing sensor histidine kinase [Geobacter
           bemidjiensis Bem]
 gi|197088578|gb|ACH39849.1| sensor histidine kinase, PAS and PAS domain-containing protein
           [Geobacter bemidjiensis Bem]
          Length = 545

 Score =  291 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 96/559 (17%), Positives = 205/559 (36%), Gaps = 34/559 (6%)

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
           + E      +    I+L           LQ          +       S   DE      
Sbjct: 6   TPERREKLPKAPLDISLPDPKGALLLQDLQRRLARVEAENAQLRRVIESQRSDEE--GYR 63

Query: 324 ETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
              +  P+    +  +G L   +  ++ +  Y+  + I        L +  +      + 
Sbjct: 64  SLYNDTPVMLHSIDRNGLLLGVSNYWVEVLGYQREEVIGRK-STDFLTEESRRYAEEVVL 122

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
           P        T    +     ++ + E  L +  +   +     E +    +  +  + + 
Sbjct: 123 PEFFR----TGFCRNVHYQMVKKSGE-LLDVLLVASGERGPQGELLRSFAVMTDVTEWKA 177

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            ++ ++    +   I+E + +GI  ++ EG +   NR  +++ G  V D++ + F  F++
Sbjct: 178 AEKALKESEERYRMIVETSQEGILAVDAEGRVSYANRQFAEMLGLEVGDVVGRLFLEFVD 237

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTM 558
                + +    ++ S +   +    T+        +   +    +   S         +
Sbjct: 238 GC---LHDEIAAKMKSREKGLSEHYETILLRNGGSRMWASVSAIPVKGPSGDFTGAFAMV 294

Query: 559 HDISEWKQEKNK-------LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
            DI++ KQ   +       LS      E  +     F   VSH++R PLTAI GFS+V+ 
Sbjct: 295 SDITKRKQAAEEIEVLHTHLSARACEMELANEELEAFSYTVSHDLRRPLTAINGFSQVLL 354

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
            + +GP  +P+  EY   I      +  +++ L++ S+   G+     E V +   V E 
Sbjct: 355 -ELYGPGMDPQCREYVREILNGSIRMNHLIDTLINFSRRSVGESV--REEVEITGLVEEL 411

Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG--GQIIIST 729
            + ++    ++ + +       +  + AD   ++ +  N+L NA  ++      +I   T
Sbjct: 412 YAELKRAEPQRNVSLLVQ--PGVRGV-ADAHLLRVVLDNLLGNAWKYSAKKELSEIAFGT 468

Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
                +     VRD G G      +   KPF ++ ++     EGTG+GL   + ++  + 
Sbjct: 469 IDHQGKTAYF-VRDNGAGFDMALGDLLFKPFQRLHDA--RDFEGTGIGLASVQRIIQRHG 525

Query: 790 GKFYIFSTPAKGTLIEIIF 808
           G+ +  S P KG       
Sbjct: 526 GQIWAESEPGKGATFYFTL 544



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/258 (12%), Positives = 71/258 (27%), Gaps = 14/258 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +DA G +   + +  + +G     ++G    +  D    D         ++  + + +T 
Sbjct: 203 VDAEGRVSYANRQFAEMLGLEVGDVVGRLFLEFVDGCLHDEIAAKMKSREKGLSEHYETI 262

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           L    G+   +   ++A+P+   + +F+G   F +V             + L    S   
Sbjct: 263 LLRNGGS--RMWASVSAIPVKGPSGDFTGA--FAMVSDITKRKQAAEEIEVLHTHLSARA 318

Query: 209 -EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
            E++  +  +E   Y +      P           L  Y    D   +     +L     
Sbjct: 319 CEMELANEELEAFSYTVSHDLRRPLTAINGFSQVLLELYGPGMDPQCREYVREILNGSIR 378

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
                +     +           ++  + +E  E               E +      V 
Sbjct: 379 MNHLIDTLINFSRR---------SVGESVREEVEITGLVEELYAELKRAEPQRNVSLLVQ 429

Query: 328 KCPIPFFVYSHGNLFYAN 345
                        +   N
Sbjct: 430 PGVRGVADAHLLRVVLDN 447



 Score = 58.1 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 25/263 (9%), Positives = 66/263 (25%), Gaps = 10/263 (3%)

Query: 69  DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID 128
             E  +        V    +ID +G L  +S    + +G    ++IG +  D        
Sbjct: 57  SDEEGYRSLYNDTPV-MLHSIDRNGLLLGVSNYWVEVLGYQREEVIGRKSTDFLTEESRR 115

Query: 129 PNNHIG--DLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHV 186
               +   +  +          +    G  L V +  +         E    R F ++  
Sbjct: 116 YAEEVVLPEFFRTGFCRNVHYQMVKKSGELLDVLLVASGE--RGPQGEL--LRSFAVMTD 171

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP---HLRMKNKVSSL 243
                      K  ++++  + E  +        +  +            L + + V  L
Sbjct: 172 VTEWKAAEKALKESEERYRMIVETSQEGILAVDAEGRVSYANRQFAEMLGLEVGDVVGRL 231

Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303
              +       +         +  S   +        ++         ++  S +     
Sbjct: 232 FLEFVDGCLHDEIAAKMKSREKGLSEHYETILLRNGGSRMWASVSAIPVKGPSGDFTGAF 291

Query: 304 SHRNHPSLSAYFDEGENLTPETV 326
           +  +  +      E   +    +
Sbjct: 292 AMVSDITKRKQAAEEIEVLHTHL 314


>gi|16130156|ref|NP_416723.1| sensory histidine kinase in two-component regulatory system with
           AtoC [Escherichia coli str. K-12 substr. MG1655]
 gi|89109038|ref|AP_002818.1| sensory histidine kinase in two-component regulatory system with
           AtoC [Escherichia coli str. K-12 substr. W3110]
 gi|157161703|ref|YP_001459021.1| sensory histidine kinase AtoS [Escherichia coli HS]
 gi|170081839|ref|YP_001731159.1| sensory histidine kinase in two-component regulatory system with
           AtoC [Escherichia coli str. K-12 substr. DH10B]
 gi|238901394|ref|YP_002927190.1| sensory histidine kinase in two-component regulatory system with
           AtoC [Escherichia coli BW2952]
 gi|256022098|ref|ZP_05435963.1| sensory histidine kinase AtoS [Escherichia sp. 4_1_40B]
 gi|301024239|ref|ZP_07187934.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           MS 196-1]
 gi|307138878|ref|ZP_07498234.1| sensory histidine kinase AtoS [Escherichia coli H736]
 gi|312973527|ref|ZP_07787699.1| signal transduction histidine-protein kinase atoS [Escherichia coli
           1827-70]
 gi|732226|sp|Q06067|ATOS_ECOLI RecName: Full=Signal transduction histidine-protein kinase AtoS
 gi|290419|gb|AAA23449.1| ORF-1 [Escherichia coli]
 gi|1736874|dbj|BAA16015.1| sensory histidine kinase in two-component regulatory system with
           AtoC [Escherichia coli str. K12 substr. W3110]
 gi|1788549|gb|AAC75279.1| sensory histidine kinase in two-component regulatory system with
           AtoC [Escherichia coli str. K-12 substr. MG1655]
 gi|157067383|gb|ABV06638.1| sensory box histidine kinase AtoS [Escherichia coli HS]
 gi|169889674|gb|ACB03381.1| sensory histidine kinase in two-component regulatory system with
           AtoC [Escherichia coli str. K-12 substr. DH10B]
 gi|238863521|gb|ACR65519.1| sensory histidine kinase in two-component regulatory system with
           AtoC [Escherichia coli BW2952]
 gi|260448687|gb|ACX39109.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Escherichia coli DH1]
 gi|299880502|gb|EFI88713.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           MS 196-1]
 gi|310332122|gb|EFP99357.1| signal transduction histidine-protein kinase atoS [Escherichia coli
           1827-70]
 gi|315615481|gb|EFU96113.1| signal transduction histidine-protein kinase atoS [Escherichia coli
           3431]
 gi|320199814|gb|EFW74403.1| Sensory histidine kinase AtoS [Escherichia coli EC4100B]
 gi|323936834|gb|EGB33119.1| hsp90-like protein [Escherichia coli E1520]
 gi|323941086|gb|EGB37273.1| hsp90-like protein [Escherichia coli E482]
          Length = 608

 Score =  291 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 94/467 (20%), Positives = 199/467 (42%), Gaps = 30/467 (6%)

Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
            +   +   +I      + L +  +         +++  +    I+    +   +    N
Sbjct: 158 SMLPIERNGEILGYIWANELTEDIRRQAWKMDVRIIIVLTAGLLISLLLIVLFSRRLSAN 217

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN--KRKMEIEVMQLCSILEATSDGIAI 467
              +T      A   P  +PQ   E   +   +N   + +         I+E  +DG+  
Sbjct: 218 IDIITDGLSTLAQNIPTRLPQLPGEMGQISQSVNNLAQALRETRTLNDLIIENAADGVIA 277

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
           I+R+G + + N A   + GY   +++ +P+++       +     + + L          
Sbjct: 278 IDRQGDVTTMNPAAEVITGYQRHELVGQPYSMLF---DNTQFYSPVLDTLEHGTEHV-AL 333

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
                 ++ + + L +   ++  +        +   D++  K+ + +++ A+++A     
Sbjct: 334 EISFPGRD-RTIELSVTTSRIHNTHGEMIGALVIFSDLTARKETQRRMAQAERLAT---- 388

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
              + +A V+HE+R PLTAI G+ ++++ Q   P+    + EY + + +  + +  ++  
Sbjct: 389 -LGELMAGVAHEVRNPLTAIRGYVQILRQQTSDPI----HQEYLSVVLKEIDSINKVIQQ 443

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703
           LL+ S+    +    ++ VSL+  V E + LVQ    + R+   +   N +  I AD   
Sbjct: 444 LLEFSRPRHSQ----WQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSPINADREL 499

Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
           +KQ+ LNIL NA+    + G+I I T   S+ +  + + D G G+     +K   PF   
Sbjct: 500 LKQVLLNILINAVQAISARGKIRIQTWQYSDSQQAISIEDNGCGIDLSLQKKIFDPFFTT 559

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             S      GTGLGL L++ +++A+ G   + S P  G    +I P+
Sbjct: 560 KAS------GTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILPI 600



 Score = 40.8 bits (94), Expect = 0.99,   Method: Composition-based stats.
 Identities = 12/117 (10%), Positives = 37/117 (31%), Gaps = 6/117 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G +  ++       G    +++G     +    +    + + D L+          
Sbjct: 278 IDRQGDVTTMNPAAEVITGYQRHELVGQPYSMLF--DNTQFYSPVLDTLEHGTEHVALEI 335

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
            +P     + + +  +   I++ + E  G     I        + +    + ++  +
Sbjct: 336 SFPGRDRTIELSVTTS--RIHNTHGEMIGA--LVIFSDLTARKETQRRMAQAERLAT 388


>gi|239834826|ref|ZP_04683154.1| PAS domain S-box-containing protein [Ochrobactrum intermedium LMG
            3301]
 gi|239822889|gb|EEQ94458.1| PAS domain S-box-containing protein [Ochrobactrum intermedium LMG
            3301]
          Length = 1158

 Score =  291 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 94/783 (12%), Positives = 231/783 (29%), Gaps = 78/783 (9%)

Query: 86   TWNIDAHGYLKEISEELPKTIGNYAFKMIG----MRLCDVSDILHIDPNNHIGD-LLKRQ 140
             W+  + G    +++   +  G     +      +    V     +       D  L   
Sbjct: 389  VWSTSSTGTPTYVNKRFIEVTGARLQDISAPDNFLNFS-VIHPDDVQKARDAMDYSLATN 447

Query: 141  NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
              +  +      +G+  Y   +  A P+          + +G+          +      
Sbjct: 448  EPYLQRYRQIRADGS--YRWTETRAEPLRDETGTVV--QWYGVCVDIDDLVAAQKSLSER 503

Query: 201  DKKFSHLHEIKKGHSSVEKEKYDIFSQQ-----------SPPPHLRMKNKVSSLTEYYAH 249
            +++ S L ++          + +                      + K + + + +    
Sbjct: 504  ERELSMLVDMVPSFIWRLNAEGEPDYFNKRLIDFCGVRIDDLGGAQTKRRAAVIEKIIHP 563

Query: 250  KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
             D    ++   L  +       +      +            L++N     ++       
Sbjct: 564  DDLEGVSQALSLSINTGKRFSMRYRVRRADGVYRWVSGQADPLRDNDGRIVQWYGLSTDI 623

Query: 310  S----LSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLL-------------- 351
                       + E    +     PI         L                        
Sbjct: 624  DDQVKAEDALKQSERRYRDLFQYMPIALTQIDAQKLAVLFKELRSQGVEELRDYIDEHPD 683

Query: 352  TKYKSVDDIEIAGGLSTLLDA----------PKLSDNNAIKPVMLYRSDRTCIAASARLH 401
               ++V+ +E+      +L                         + RS            
Sbjct: 684  FLMRAVEALEVEEVNDHILGMFGASSPSEMYGSAGRYWQPGLDTIRRSIEARYRGEEVFQ 743

Query: 402  TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
                      ++  + F  A              +    +  +  ++     L  ++EA 
Sbjct: 744  EETKVMRLDGSVIDVLFTTARPDAVADKSLVGFIDITQRKKAEEALQERERSLWRLVEAL 803

Query: 462  SDGIAIINREGIILSTNRAVSKLFGYPVEDI-----LRKPFTVFLEQNTPSVMNHYLTEI 516
               I   +  G  +  +  + +  G+ ++ +     LR      +  +    +       
Sbjct: 804  PVMIDCADANGEPIYRSDRLCEFLGFGLDQLEENRKLRTTLDAGVHPDDLQGVLEQYAHC 863

Query: 517  LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLS 572
            L+        +       + +   +    + +   S     +++   DI    + + +L 
Sbjct: 864  LATGEP--YARRHRLRRFDGQYRWVETRAEAMRDGSGNIVQWNVICLDIDREVRAQEELR 921

Query: 573  HAKKIAEKESSHKS--DFLARVSHEIRTPLTAIIGFSEVIKNQRFG-PLGNPRYIEYANY 629
               +   + S   S  +  A ++HE+  PL AI+  S   +      P    R ++    
Sbjct: 922  LTLEKLARASQASSLAELSASIAHEVNQPLAAIVANSHACQRWLMAEPPNTERALKTVER 981

Query: 630  IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
            I R      +IV  +  + K    +  +  + + L + +SE   L+       RI     
Sbjct: 982  ITRDATSAAEIVGRIRALFK----QSFVAKKKIMLSDIISEVRDLMAEELTRWRIRTVVD 1037

Query: 690  FANNIPRILADLRSVKQIALNILSNAIHFTP--SGGQIIISTTHTSNEEVILRVRDTGVG 747
             A+ +P ++AD   ++Q+ LN++ NA+      S   + I       + V  ++ D GVG
Sbjct: 1038 AADGLPFVMADKVQIQQVILNLIRNAVEAMETVSDRLLTIEV-VRDEDVVRTKISDRGVG 1096

Query: 748  MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
            ++    E+  +PF         + +G G+GL +++++V+A+ G+ +      +GT +   
Sbjct: 1097 ISPT--ERMFEPFITT------KEQGMGMGLAISRSIVEAHGGRLWAEKNEPQGTSLVFT 1148

Query: 808  FPL 810
             P+
Sbjct: 1149 LPV 1151



 Score =  103 bits (258), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 48/491 (9%), Positives = 130/491 (26%), Gaps = 44/491 (8%)

Query: 120 DVSDILH-IDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGF 178
           D++     +  ++              +      +G+  Y  I+  + P YS + E    
Sbjct: 164 DLTHPDDQLSISHATARAFWTGVPQITRHRRRQPDGS--YRWIETRSEPGYSVSVEIG-- 219

Query: 179 RGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYD-------IFSQQSPP 231
               +V          A     D+       +           +D       +       
Sbjct: 220 ---NLVTERDSIPRSVAGPSGNDEAEPMRSAMVVESIFGNGWAFDATGRWIFLHPFAQSS 276

Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT-------SEESSLPEQEDFHTINLNQYT 284
             + +     ++ E +     +L  + Y  +        +       +  F   +     
Sbjct: 277 LGVSLDYLNEAVDEGHTAWKRLLHPDDYHDVAKRWLHCLATGEDFNVEFRFRRASDVYVW 336

Query: 285 KKQYFGTLQNNSKESFEYLSHRNH----PSLSAYFDEGENLTPETVDKCPIPFFVYS-HG 339
            +     ++++S     +                  E E    + +D  P   +  S  G
Sbjct: 337 ARTAARAVRDHSGRIAGWYGIALDNDVYKKTVTALREREKSLQQLIDTVPAMVWSTSSTG 396

Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399
              Y N  F+ +T  +  D       L+  +  P               ++        R
Sbjct: 397 TPTYVNKRFIEVTGARLQDISAPDNFLNFSVIHPDDVQKARDAMDYSLATNE---PYLQR 453

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459
              I+ +  +            ++    +   G+  +  D    ++ +     +L  +++
Sbjct: 454 YRQIRADG-SYRWTETRAEPLRDETGTVVQWYGVCVDIDDLVAAQKSLSERERELSMLVD 512

Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP-------FTVFLEQNTPSVMNHY 512
                I  +N EG     N+ +    G  ++D+               +  +    ++  
Sbjct: 513 MVPSFIWRLNAEGEPDYFNKRLIDFCGVRIDDLGGAQTKRRAAVIEKIIHPDDLEGVSQA 572

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEK 568
           L+  ++   R            +     +      L  +    +       DI +  + +
Sbjct: 573 LSLSINTGKR--FSMRYRVRRADGVYRWVSGQADPLRDNDGRIVQWYGLSTDIDDQVKAE 630

Query: 569 NKLSHAKKIAE 579
           + L  +++   
Sbjct: 631 DALKQSERRYR 641



 Score =  103 bits (256), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 44/526 (8%), Positives = 121/526 (23%), Gaps = 60/526 (11%)

Query: 87  WNIDAHGYLKEISEELPKTIGNY-----AFKMIG-MRLCDVSDILHIDP-NNHIGDLLKR 139
           W  D+ G +  ++E +   +G            G      +                L+ 
Sbjct: 30  WATDSAGGIIYMTESMLSLVGFSLDQFNEPAGAGTRGWSKLIHPDDYAYFAATRLRSLET 89

Query: 140 QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199
              +  +  +    G   Y     A  P+  +     G+ G  I                
Sbjct: 90  GERYAIEHRVLSSSG--AYRWCRSAGEPVRDKGSRIVGWYGTVI---------------- 131

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
                         +      +    +  +    +   +    L   +   D +  +   
Sbjct: 132 ------------DAYVPSITGERFTHATNASLDGVTQSDTAQRLDLTHP-DDQLSISHAT 178

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
                       +      + +    +       + S E    ++ R+    S     G 
Sbjct: 179 ARAFWTGVPQITRHRRRQPDGSYRWIETRSEPGYSVSVEIGNLVTERDSIPRSVAGPSGN 238

Query: 320 NLTPETVDKCPI------PFFVYSHGNLFYANPSFLLLTKYKSV---DDIEIAGGLSTLL 370
           +          +       +   + G   + +P              + ++        L
Sbjct: 239 DEAEPMRSAMVVESIFGNGWAFDATGRWIFLHPFAQSSLGVSLDYLNEAVDEGHTAWKRL 298

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
             P    + A + +    +         R    +   +  +          +        
Sbjct: 299 LHPDDYHDVAKRWLHCL-ATGEDFNVEFRF---RRASDVYVWARTAARAVRDHSGRIAGW 354

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490
            GI  ++   +     +      L  +++     +   +  G     N+   ++ G  ++
Sbjct: 355 YGIALDNDVYKKTVTALREREKSLQQLIDTVPAMVWSTSSTGTPTYVNKRFIEVTGARLQ 414

Query: 491 DI-LRKPFTVF--LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
           DI     F  F  +  +        +   L+ +      +       +          + 
Sbjct: 415 DISAPDNFLNFSVIHPDDVQKARDAMDYSLATNEPYL--QRYRQIRADGSYRWTETRAEP 472

Query: 548 LPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
           L   +   +       DI +    +  LS  ++           F+
Sbjct: 473 LRDETGTVVQWYGVCVDIDDLVAAQKSLSERERELSMLVDMVPSFI 518



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 45/418 (10%), Positives = 110/418 (26%), Gaps = 53/418 (12%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMR-------LCDVSDILHIDPNNHIGDL- 136
           F W ++A G     ++ L    G     + G +       +  +     ++  +    L 
Sbjct: 517 FIWRLNAEGEPDYFNKRLIDFCGVRIDDLGGAQTKRRAAVIEKIIHPDDLEGVSQALSLS 576

Query: 137 LKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRAL 196
           +     +  +  +   +G  +Y  +   A P+   +      + +G+             
Sbjct: 577 INTGKRFSMRYRVRRADG--VYRWVSGQADPLRDNDGRIV--QWYGLSTDIDDQVKAEDA 632

Query: 197 GKRLDKKFS--------HLHEIKKGHSSVEKEKYDIFSQQS--------PPPHLRMKN-- 238
            K+ ++++          L +I     +V  ++      +         P   +R     
Sbjct: 633 LKQSERRYRDLFQYMPIALTQIDAQKLAVLFKELRSQGVEELRDYIDEHPDFLMRAVEAL 692

Query: 239 KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKK--QYFGTLQNNS 296
           +V  + ++           +                  +I      ++  Q    +    
Sbjct: 693 EVEEVNDHILGMFGASSPSEMYGSAGRYWQPGLDTIRRSIEARYRGEEVFQEETKVMRLD 752

Query: 297 KESFEYLSHRNHPS------------------LSAYFDEGENLTPETVDKCPIPF-FVYS 337
               + L     P                         E E      V+  P+      +
Sbjct: 753 GSVIDVLFTTARPDAVADKSLVGFIDITQRKKAEEALQERERSLWRLVEALPVMIDCADA 812

Query: 338 HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397
           +G   Y +        +  +D +E    L T LDA    D+             T     
Sbjct: 813 NGEPIYRSDRLCEFLGFG-LDQLEENRKLRTTLDAGVHPDDLQGVLEQYAHCLATGEPY- 870

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
           AR H ++        +        +     +  N I  +       + ++ + + +L 
Sbjct: 871 ARRHRLRRFDGQYRWVETRAEAMRDGSGNIVQWNVICLDIDREVRAQEELRLTLEKLA 928


>gi|149377684|ref|ZP_01895420.1| Signal transduction histidine kinase [Marinobacter algicola DG893]
 gi|149358037|gb|EDM46523.1| Signal transduction histidine kinase [Marinobacter algicola DG893]
          Length = 438

 Score =  291 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 70/395 (17%), Positives = 152/395 (38%), Gaps = 34/395 (8%)

Query: 420 KANQFPENMPQNGIEPEDVDTR-----INKRKMEIEVMQLCSILEATSDGIAIINREGII 474
             ++ P+++   G   + +          + K+  ++ ++     A  DG+ + +  G +
Sbjct: 60  GGDEAPQSVGLWGDIFDGLHRLHQNHLRTQDKLRAQINRVQESTNAMRDGVIMTDSRGAM 119

Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
              N +   L G+       +     +                     +   +    ++ 
Sbjct: 120 EWWNGSAEHLLGFRRSSDRGQFIHNLIRNPAFKAYFD----------SRDYREPLELNSP 169

Query: 535 EEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
            +  + L+I I          +   D++   Q +                + DF+  VSH
Sbjct: 170 AKPHIHLQIQISLFGDDDR-LIVAKDVTRLYQLE--------------QMRQDFVGNVSH 214

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           E+RTPLT I G+ E + +        P++    N + +  + +  ++ DL+ +S+IE+G+
Sbjct: 215 EMRTPLTVISGYLETLVDNADD--LPPKWRRAINTMAQQSSRMEALITDLILLSRIETGE 272

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714
             ++     L   + +     +  + ++      S   +   +  D   ++    N++ N
Sbjct: 273 QTINDAVTDLQAMIQQICHDAKALSGDQGHEFNVSI-GDRHLLRGDESQLRSAFSNLIFN 331

Query: 715 AIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           A+ +TP+GG I I      +    L V+DTG+G+    + +  + F +   S+     GT
Sbjct: 332 AVKYTPAGGLITIIWKTDRDGG-HLSVKDTGIGIDPVHIPRLTERFYRADPSRHKETGGT 390

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GLGL + K ++  + G   I S    G+     FP
Sbjct: 391 GLGLAIVKHVLLNHDGNLEIRSRIGDGSEFTCHFP 425


>gi|295675446|ref|YP_003603970.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1002]
 gi|295435289|gb|ADG14459.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1002]
          Length = 1415

 Score =  291 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 120/632 (18%), Positives = 221/632 (34%), Gaps = 31/632 (4%)

Query: 200  LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
            L    + ++   + H +      D   +         ++    +         +   EK 
Sbjct: 395  LVGNAAAINVQLRQHYAGALRVLDSLGESDSLYFAVREDLSPLVKLIDRALQAMPAAEKQ 454

Query: 260  PLLTSEE-SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS--LSAYFD 316
             +       + P+   +    +         G +   +  ++  L               
Sbjct: 455  RIRRKWVSPAAPDNAVWSVTAVRLLPVLIGIGVVLLVTLRAYVLLQREVRLRKQTERELA 514

Query: 317  EGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
               N     +   P P       G     N ++      +  D +    G +T       
Sbjct: 515  LQLNFQETMMKTVPYPLIAKGLDGRYIAINEAYERACGLERKDVL----GRTTAEVGTWG 570

Query: 376  SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
              N+ +   M     R    A   L       E+   + +    +     +     G   
Sbjct: 571  DTNSRVLDDMTRELLRGGGIAKVELQFEDRAGESRHGIFWTSVCEG-GDGQPAYVLGTMV 629

Query: 436  EDVDTRINKRKMEIEVMQLCSILEATSDGIAII--NREGIIL--STNRAVSKLFGYPVED 491
            +  D R  + +      +L  +  +    +  +  +  G             LFG     
Sbjct: 630  DITDIRRAEMRARETERRLFDVTRSLPAVVFQMRRSPSGAYSFPYIGGDARHLFGESDSP 689

Query: 492  ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
               +     + +    ++   L    S      ++          +L  +R  +     +
Sbjct: 690  DGARVDFERVSELDRPLVLAELERSASCATPVHMQFRL---ESAGQLKWVRAELVPRREA 746

Query: 552  SC---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                 +S    D S  +    +L+ A+  AE  S  K +F A +SHEIRTP+  ++G  E
Sbjct: 747  DGSVVWSGYWVDASVERARSEELARARDAAEAASRAKDNFFAMMSHEIRTPMNGVLGLVE 806

Query: 609  VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
            V++             E    I  S   +L I++DLLD SKIE+G++ L  EP+ L E V
Sbjct: 807  VLERTPLST----DQSEMLGMIHESAGALLQILDDLLDYSKIEAGRLTLEAEPIDLRELV 862

Query: 669  SEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIII 727
              A+ L+   A+EK + +R    +N    +  D   ++QI  N+L NAI FTP G ++ +
Sbjct: 863  DNAVGLLAGRAHEKGLKVRVDIGSNAAATLRGDSVRLRQILFNLLGNAIKFTPKG-EVGV 921

Query: 728  STTHTSN----EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
            S     +    + + L VRDTG+G+         +PF Q  +S   R  GTGLGL + + 
Sbjct: 922  SVAVVEDRSASQTLELTVRDTGIGIAPNVQAGLFEPFVQAESSTTRRFGGTGLGLTICRK 981

Query: 784  MVDANMGKFYIFSTPAKGTLIEIIF--PLYDT 813
            ++D   G   + S P +GT + +    P+ + 
Sbjct: 982  LIDLMSGTLTLHSEPGRGTSMIVRLTMPIVEQ 1013



 Score = 55.4 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 39/379 (10%), Positives = 91/379 (24%), Gaps = 20/379 (5%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP---NNHIGDLLKRQNTWYGK 146
              G    I+E   +  G     ++G    +V      +    ++   +LL+       +
Sbjct: 535 GLDGRYIAINEAYERACGLERKDVLGRTTAEVGTWGDTNSRVLDDMTRELLRGGGIAKVE 594

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                  G + +     +          +       I  + R +   R   +RL      
Sbjct: 595 LQFEDRAGESRHGIFWTSVCEGGDGQPAYVLGTMVDITDIRRAEMRARETERRLFDVTRS 654

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
           L  +           Y            R     S   +      + +     PL+ +E 
Sbjct: 655 LPAVVFQMRRSPSGAYSFPYI---GGDARHLFGESDSPDGARVDFERVSELDRPLVLAEL 711

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
                      +     +  Q    ++       E                    + E  
Sbjct: 712 ERSASCATPVHMQFRLESAGQLKW-VRAELVPRREADGSVVWSGYWVDASVERARSEELA 770

Query: 327 DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
                     +      A  +F  +  ++    +    GL  +L+   LS + +    M+
Sbjct: 771 RA------RDAAEAASRAKDNFFAMMSHEIRTPMNGVLGLVEVLERTPLSTDQSEMLGMI 824

Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI---- 442
           + S    +     L          L +   P +        +        +   ++    
Sbjct: 825 HESAGALLQILDDLLDYSKIEAGRLTLEAEPIDLRELVDNAVGLLAGRAHEKGLKVRVDI 884

Query: 443 ---NKRKMEIEVMQLCSIL 458
                  +  + ++L  IL
Sbjct: 885 GSNAAATLRGDSVRLRQIL 903


>gi|168022780|ref|XP_001763917.1| sensory histidine protein kinase [Physcomitrella patens subsp.
           patens]
 gi|162684922|gb|EDQ71321.1| sensory histidine protein kinase [Physcomitrella patens subsp.
           patens]
          Length = 379

 Score =  291 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 76/267 (28%), Positives = 137/267 (51%), Gaps = 17/267 (6%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E ++   +L  ++K AE+ S  KSDFLA +SHEIRTP+  I+G + ++      P     
Sbjct: 5   ELRKANEELQVSQKKAEQASHAKSDFLANMSHEIRTPIHGILGLTALLLESDLSP----D 60

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             E    +    +L+L I+N +LD++KIE+G++ +   P ++ + VS    ++Q  A ++
Sbjct: 61  QTESLQSVKECADLLLHIINSVLDLAKIEAGRLEVEKVPFNIRKMVSSTFRMLQARAQQR 120

Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----- 736
            + +      ++P+ ++ D+  ++Q  LN++ NA+ FT  G  + +S   T++       
Sbjct: 121 GLKLLWEVDKSVPQTLMGDVGKLQQCLLNLVGNALKFTHEGS-VTVSVILTNDTTTAQDA 179

Query: 737 -----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
                V   VRDTG+G++   L    KPF Q   S      GTGLGL + +  V+   G 
Sbjct: 180 PDTMFVEFEVRDTGIGISQEILLDMFKPFKQADASTSRLYGGTGLGLCIVQRFVELLGGT 239

Query: 792 FYIFSTPAKGTLIEIIFPLYDTSHPHD 818
            +  S   KG+    + P + +++P +
Sbjct: 240 IWAESEVGKGSAFHFLLPFF-SNNPKE 265


>gi|330938839|gb|EGH42358.1| PAS protein [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 402

 Score =  291 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 89/426 (20%), Positives = 171/426 (40%), Gaps = 28/426 (6%)

Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK--RK 446
           + R      A         E    +T  P   A +      + GI  E +         +
Sbjct: 1   ARRFGAPIEALAKAADRIGEGDYEVTL-PISSAAEMNLLTRRFGIMAEALRQHQATNVDE 59

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
           +     +L ++L++  DG+ +I+R+G +   N    +  G+    +              
Sbjct: 60  LLAGQQRLQAVLDSIDDGLLMIDRQGHLEHLNPVAQRQLGWDESRLGHSLGEALGRPELD 119

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEW 564
             ++  L         + L         E +LL+  +              + +HD++E 
Sbjct: 120 EQLHLVLRGGTLERAPEDLAIEI---DGESRLLTYSMTPVSHTKGHILGAVMVLHDVTEQ 176

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           +  +                +S+F+ R SHE+RTP+T  +  +  +  +R       R  
Sbjct: 177 RAFE--------------RVRSEFVLRASHELRTPVTG-MHMAFGLLQERLHFAPESREA 221

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           +  N +      ++ ++NDLL+ S+ ++G   L   P S++  + EA +  +  A E+ I
Sbjct: 222 DLLNTVTEEMQRLMQLINDLLNFSRYQNGLQKLKLAPCSIETLLQEAKARFEDQAQEQDI 281

Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744
           ++       +PR+ AD   ++++  N+L NA+  TP  G I +       E  I+ V D 
Sbjct: 282 VLMLDMQEPMPRLHADQSQLERVLDNLLDNALRHTPPNGLIRLQ-ARRHGERAIISVEDN 340

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G G+   +  +  +PF Q+      +  G GLGL L K +V  + G+  ++S P +GT  
Sbjct: 341 GEGIAYGQQGRIFEPFVQV----GRKKGGAGLGLALCKEIVQLHGGRMGVYSRPGQGTQF 396

Query: 805 EIIFPL 810
            +  PL
Sbjct: 397 YMALPL 402



 Score = 44.6 bits (104), Expect = 0.070,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 69/241 (28%), Gaps = 9/241 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G+L+ ++    + +G    + +G  L +      +D       L+ R  T      
Sbjct: 81  IDRQGHLEHLNPVAQRQLGWDESR-LGHSLGEALGRPELDEQ---LHLVLRGGTLERAPE 136

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
              IE       +  +  P+        G     ++H          +  R +      H
Sbjct: 137 DLAIEIDGESRLLTYSMTPVSHTKGHILGA--VMVLHDVTEQRAFERV--RSEFVLRASH 192

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           E++   + +      +  +    P  R  + ++++TE    +   L  +       +   
Sbjct: 193 ELRTPVTGMHMAFGLLQERLHFAPESREADLLNTVTE-EMQRLMQLINDLLNFSRYQNGL 251

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
              +    +I       K  F                   P L A   + E +    +D 
Sbjct: 252 QKLKLAPCSIETLLQEAKARFEDQAQEQDIVLMLDMQEPMPRLHADQSQLERVLDNLLDN 311

Query: 329 C 329
            
Sbjct: 312 A 312


>gi|221196442|ref|ZP_03569489.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
           CGD2M]
 gi|221203114|ref|ZP_03576133.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
           CGD2]
 gi|221177048|gb|EEE09476.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
           CGD2]
 gi|221182996|gb|EEE15396.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
           CGD2M]
          Length = 653

 Score =  291 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 101/432 (23%), Positives = 164/432 (37%), Gaps = 21/432 (4%)

Query: 392 TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME--I 449
                 A   T   +    +A+  I             +     +  D R          
Sbjct: 73  ALWWRDAPTATWLADAGTFVAIGVIECALIAAVRPLFARTRAVDDARDARREPAAAPPPS 132

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
           E + L  +++A+ D I  ++    I+S NRA  ++FG     ++ +  T           
Sbjct: 133 EDVLLRRVVDASPDAIVGVDGARRIVSWNRAAQRIFGADAATMIGRDVTTLFAPRWLR-- 190

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS-----------LTM 558
              +   +            L   ++            +  ++ +               
Sbjct: 191 RQPVPASIDEVHAPVGPIDVLCMRQDAHCFRATFAASPIVDANGHVDGLSMTLREARERR 250

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            D    +        A+  A+  +  K + LA VSHE+RTPL  I G+ EV+++      
Sbjct: 251 RDERRDRLSLRGARDARVQADTANRLKDELLATVSHELRTPLNVIYGWVEVLRS----VD 306

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
           G     +  + IDRS   +  +V DLLD S + +GK+ L   PV +   V +A       
Sbjct: 307 GQGFAQQAVDAIDRSARSLARMVGDLLDASSLATGKLRLERTPVDVARVVHDAAREFGAP 366

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738
           A+ K I + T  A     I AD   + Q+  N+LSNAI FTPSGG+I++S        V 
Sbjct: 367 AHAKGITLVTEGAGTACVISADAERLHQVLSNLLSNAIKFTPSGGRIVVSLARVD-AHVS 425

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST- 797
           L V DTG GM    L     PF +  N+      G GLGL + + + + + G     S  
Sbjct: 426 LSVADTGQGMAPEALPHLFDPFNRPANAPASPQRGLGLGLSIVRNIAELHGGSVEAASEG 485

Query: 798 PAKGTLIEIIFP 809
           P +G  + +  P
Sbjct: 486 PGRGLTVTVTLP 497



 Score = 46.6 bits (109), Expect = 0.019,   Method: Composition-based stats.
 Identities = 44/484 (9%), Positives = 110/484 (22%), Gaps = 34/484 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D    +   +    +  G  A  MIG  +  +     +        + +      G   
Sbjct: 151 VDGARRIVSWNRAAQRIFGADAATMIGRDVTTLFAPRWLRRQPVPASIDEVHAPV-GPID 209

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           +  +           AA PI   N    G          R  ++ R        + + + 
Sbjct: 210 VLCMRQDAHCFRATFAASPIVDANGHVDGLSMTLREARERRRDERRDRLSLRGARDARVQ 269

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
                    E         ++P   +    +V    +        +        +     
Sbjct: 270 ADTANRLKDELLATVSHELRTPLNVIYGWVEVLRSVDGQGFAQQAVDAIDRSARSLARMV 329

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD----------EG 318
               +           ++      +     + E+ +  +   ++   +          + 
Sbjct: 330 GDLLDASSLATGKLRLERTPVDVARVVHDAAREFGAPAHAKGITLVTEGAGTACVISADA 389

Query: 319 ENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEI--AGGLSTLLDAPKL 375
           E L     +       F  S G +  +             D  +      L  L D    
Sbjct: 390 ERLHQVLSNLLSNAIKFTPSGGRIVVSLARVDAHVSLSVADTGQGMAPEALPHLFDPFNR 449

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNR---ENSLAMTFIPFEKANQFPENMPQNG 432
             N    P        + +   A LH              +T      A    +      
Sbjct: 450 PANAPASPQRGLGLGLSIVRNIAELHGGSVEAASEGPGRGLTVTVTLPAGWEADMAVVPL 509

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
              + V        +E +              + +++ E    ++  A  +  G  V   
Sbjct: 510 GAVDSVP----AAALEHQR-------------VLVVDDEPTSRASLSAALRTLGAQVSTA 552

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
                 +   +  P  +      +   D    +E++     +  ++  + +         
Sbjct: 553 QSGRDALASIERDPPTVVLSDIAMPDGDGFWLIERVRRLPGRHARMPVVAVTAHAGVADR 612

Query: 553 CYSL 556
              +
Sbjct: 613 QRVM 616



 Score = 39.2 bits (90), Expect = 3.1,   Method: Composition-based stats.
 Identities = 23/274 (8%), Positives = 58/274 (21%), Gaps = 10/274 (3%)

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244
                +   +     L    +   +            +      +          ++   
Sbjct: 2   RTVTRELFRQGAWVVLAVGVACALQAGAIRVVGAHAPFAPLPFYAGVAAAAWLTSLAGGL 61

Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
                   V+    +    +  + L +   F  I + +         L   ++   +   
Sbjct: 62  AAIVASTVVIAALWWRDAPT-ATWLADAGTFVAIGVIECALIAAVRPLFARTRAVDDARD 120

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIA 363
                  +A     + L    VD  P     V     +   N +   +    +   I   
Sbjct: 121 -ARREPAAAPPPSEDVLLRRVVDASPDAIVGVDGARRIVSWNRAAQRIFGADAATMIGR- 178

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA-----SARLHTIQWNRENSLAMTFIPF 418
             ++TL     L        +    +    I        A      +     +       
Sbjct: 179 -DVTTLFAPRWLRRQPVPASIDEVHAPVGPIDVLCMRQDAHCFRATFAASPIVDANGHVD 237

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
             +    E   +   E  D  +    R   ++  
Sbjct: 238 GLSMTLREARERRRDERRDRLSLRGARDARVQAD 271


>gi|32481649|gb|AAP84163.1| kinase sensor protein of two component regulatory system
           [Pseudomonas aeruginosa PA14]
          Length = 931

 Score =  291 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 103/648 (15%), Positives = 224/648 (34%), Gaps = 46/648 (7%)

Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254
                 +++ + L+ +      +   +  +    +    L + +    L        D+ 
Sbjct: 64  EAQLYFEQREALLNHLSGNVVPLAAGRALVNEAPNNVSILPLSDGGRGLLLTARTLGDLR 123

Query: 255 KTEKY--PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
           +       L+ +++  L  +           +        +         +         
Sbjct: 124 EKRLALMYLVDTDKGPLVYRLTADGRPSAAISSTITKEVYRALLATPSAPVHWVTDGGTP 183

Query: 313 AYFDEGENLTPETVD-KCPIPFFVYSHGNLFYANPS--------FLLLTKYKSVDDIEIA 363
                 E+L  E  +    +        ++   N +           +      + +   
Sbjct: 184 QRLYLFESLGDEPGEGWLGLEILGEDLDSMLRRNDAGNYMLLDQHGQVVLATDAEALGSG 243

Query: 364 GGLSTLLDAPK--LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
              + L       +      + ++L++   +          I            +    A
Sbjct: 244 ASRTLLRGDGFGFIGAGPLPQHMVLFQHVGSSSWDLIYHIGIGRLLLALWLPLLLASALA 303

Query: 422 NQFPENMPQNGIEPE---DVDTRINKRKMEIEVMQLCSILEATSDGIAIINR-EGIILST 477
                 +       E       +     ++       ++++A    + ++ R +  ++  
Sbjct: 304 LAVGILLHWLVRSIERRLIEPAKRRLEALKESEAFSRAVIQAAPVALCVLRRADAAVVLE 363

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
           N    +  G         P               ++++  +  ++ + E+     T+   
Sbjct: 364 NPQARQWLGDSEAIAHDAP--------------RWISQAFAGGVKCSGEE---LETEAGL 406

Query: 538 LLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
            L L     +            +IS  K+ + +L+ AK +A+  +  K+ FLA +SHEIR
Sbjct: 407 HLHLNYTPTRYNGEDVLFCAFSEISARKRMEAELARAKSLADAANEAKTLFLATMSHEIR 466

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TPL  ++G  E++           +   Y   I  S + +L +++D+LD+SKIE+G+++L
Sbjct: 467 TPLYGMLGTLELLGRTELSR----QQAGYLKAIQHSSSTLLQLISDVLDVSKIEAGQLDL 522

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAI 716
                S  E   E +      A  K + + T  +  +P R+     S++QI  N+LSNA+
Sbjct: 523 ECVEFSPLELTEEVVQSFTGAAQAKGLQLYTCLSAELPLRMRGAAASIRQILNNLLSNAV 582

Query: 717 HFTPSGGQ-IIISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
            FT +G   + +  +    E V+L   V DTG+G+   +  +  +PF QI  S+     G
Sbjct: 583 KFTDNGYVNVHLKASVVDAECVMLTWQVNDTGMGINVEDQPRLFEPFYQIRRSEHPVA-G 641

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD---TSHPHD 818
           TGLGL +++ +     G   + S    G+   +  PL      + P D
Sbjct: 642 TGLGLSISQRLAQLMNGSLKLVSELGLGSSFSLRLPLERIAMQAEPQD 689


>gi|312962748|ref|ZP_07777237.1| two-component system, NarL family, sensor histidine kinase EvgS
           [Pseudomonas fluorescens WH6]
 gi|311283123|gb|EFQ61715.1| two-component system, NarL family, sensor histidine kinase EvgS
           [Pseudomonas fluorescens WH6]
          Length = 1206

 Score =  291 bits (746), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 120/673 (17%), Positives = 236/673 (35%), Gaps = 44/673 (6%)

Query: 150 WPIEGTNLYVPIDLAALPI--YSRNREFSGFRG--FGIVHVNRVDNDPRALGKRLDKKFS 205
           W      + V +D +  P+  +  + +F G       IV               L     
Sbjct: 300 WLAAHKKIRVLVDGSYAPLTFFDEHDQFQGLSADLLKIVRQRTGLETEIVRSSNLASMLK 359

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
           HLH+ +    +      +  S         +   V            +       L    
Sbjct: 360 HLHDKQADLIAASNVGDERLSPDQYTRPYAISPFVLVTQRSATAPRTLEAFNGKHL---G 416

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
             S      +      Q  ++    +++   + +   L    H    A +    +   + 
Sbjct: 417 IPSGSPLSPWLAQQYPQIIQEPVSTSVRGVERVAKGELEGSIHTQFGADYFIKHHFQRDL 476

Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
                +  +                +    S DD+ +   ++ +L A        +K + 
Sbjct: 477 QVAAVVGEYP-------------ARIAMAVSTDDLPLKSIVNKVLLAI---PPEELKTLS 520

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
               +    A S+  +T + +    +A           +   +            R  + 
Sbjct: 521 DRWRNHAAPAVSSSWNTYKDDLYPIIAAAVAFILAFLIWNHYLRIQ-----IKKRRSAEL 575

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            +  ++    ++++ +   + + ++ G +   NRA  +      ED++  PF+   E  +
Sbjct: 576 ALSDQLAFSKTLIDGSPIALYVRDKSGRLAHCNRAYLEFLHTRQEDVMGTPFSDT-EIIS 634

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH----DI 561
           P++   Y       D         L      +L  +         S+     +     DI
Sbjct: 635 PTLSLQYQQVYKDNDPNVEPTFADLDIEVNGQLHQIYHWTLPFQNSAGEFAGIIGGWLDI 694

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           SE  Q   +L  AK+ A+  +  KS FLA +SHEIRTP++A+IG  E+++ +   P    
Sbjct: 695 SERGQLIEQLLQAKEAADDANESKSIFLASMSHEIRTPISALIGLIEMLRVRGGSP---E 751

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
           +  E       S   +L ++ D+LD+SKIE+G M     P  L + +     L ++ A  
Sbjct: 752 QIDENLRVAHLSAQSLLSLIGDILDLSKIEAGAMVPSPRPTDLAQLLESVHKLFEVNAQN 811

Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN------E 735
           K +            +L D   + QI  N++SNAI FT  G  + +S     +       
Sbjct: 812 KGLTFDLQIDAMASLVLIDSLMLNQIIANLISNAIKFTQQGF-VKLSLKQLPDDHESGFG 870

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
             ++ V+D+G+G+   + +   +PF Q+  +       TGLGL +   +      +  I 
Sbjct: 871 RYLIEVQDSGLGLNEQQKKAIFEPFVQVSPNTTGERS-TGLGLSICTRLATLLGARLSIN 929

Query: 796 STPAKGTLIEIIF 808
           STP +G+  ++ F
Sbjct: 930 STPGQGSCFQLEF 942


>gi|148981902|ref|ZP_01816560.1| hybrid sensory histidine kinase BarA [Vibrionales bacterium SWAT-3]
 gi|145960703|gb|EDK26045.1| hybrid sensory histidine kinase BarA [Vibrionales bacterium SWAT-3]
          Length = 937

 Score =  291 bits (746), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 88/375 (23%), Positives = 161/375 (42%), Gaps = 28/375 (7%)

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
            + Q   +  A    I  +   G+           F + +   + +P T        +++
Sbjct: 168 RLQQYQEVFSAFLVLILGLGLSGV-----------FAFRLMHDVTQPITHM-----KNMV 211

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN 569
           +      L + +   +             +++ +    +           D+ E  ++  
Sbjct: 212 DRIRRGHLDVRIEGKMHGELDSLKNGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQLE 271

Query: 570 ----KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
               +L  AKK A++ +  KS+FLA +SHE+RTPL  +IGF+  +              +
Sbjct: 272 IQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTHLSN----SQTD 327

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           Y   I+RS N +L I+ND+LD SK+E+GK+ L   P     ++ E ++L    A+EK + 
Sbjct: 328 YLQTIERSANNLLSIINDILDFSKLEAGKLALENIPFEFQASLEEVVNLQATNAHEKGLE 387

Query: 686 IRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRV 741
           +       +P  ++ D   ++QI  N++ N+I FT  G     + + +    N E+   V
Sbjct: 388 LTLKIDPKVPAGVVGDPLRIQQILTNLVGNSIKFTERGNIDISVELRSQSEDNIELQFMV 447

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
           RDTG+G++  +  +  + F Q   S   R  GTGLGL + + +V    G+  + S   +G
Sbjct: 448 RDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQG 507

Query: 802 TLIEIIFPLYDTSHP 816
           +       L  T  P
Sbjct: 508 STFWFTLRLSTTDMP 522


>gi|209523540|ref|ZP_03272094.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
 gi|209495945|gb|EDZ96246.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
          Length = 1355

 Score =  291 bits (746), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 113/624 (18%), Positives = 223/624 (35%), Gaps = 105/624 (16%)

Query: 276 HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV 335
            ++ L     +     L     +  E L   N         + E       +        
Sbjct: 325 PSLRLTVPPGEDELTGLGQTINQMLEALEQAN-----IQSQDSEERYRLMAEYSTDLITH 379

Query: 336 Y-SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394
           +   G + YA+P+  LL  Y+    I      S       L+  +    ++L +     +
Sbjct: 380 HSRRGLIRYASPACSLLLGYEPESLIGQHP--SKFFHPDDLNTLSKTLEIVLSQK----V 433

Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV--- 451
           + +        N E     T        +        G+  +  D +  +++++      
Sbjct: 434 SYTLTYRIRHKNGEYIWFETTSRAIYHPETGRVQEILGVSRDISDRKQREQELQDSEASI 493

Query: 452 ---------------MQLCSILE------ATSDGIA--IINREGIILSTNRAVSKLFGYP 488
                           QL  IL+          GI   I+N +    +   +   + G  
Sbjct: 494 RSLYQITSSRHLDWQEQLQQILKLGCDKFHLEVGIINQILNLD----TPQPSAQIMAGID 549

Query: 489 VE--DILRKPFT---VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE-------- 535
                     F      +     +        +L        ++                
Sbjct: 550 PNNSWSFGDNFDLNNPLILATLKAENPLIFESVLVSGFPSYADENCWQIEAYMAIPIKVY 609

Query: 536 EKLLSLRIIIKKLPFSSCYSLTMHDI-----------SEWKQEKNKLSHAKKIAEKESSH 584
            ++        + P +  +     ++            E +Q   +LS A+  A   +  
Sbjct: 610 GQVYGTLCFWSQNPLNEPFRAVDQELLKLMAQWIGSEIERQQTAQELSQARDEALAATRA 669

Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
           KS+FLA +SHEIRTP+ A+IG + ++ +     +      ++   I  S + +L ++ND+
Sbjct: 670 KSEFLATMSHEIRTPMNAVIGMTGLLLDTPLSLV----QQDFVETIRSSSDALLSLINDI 725

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRS 703
           LD SKIESGK++L   P SL   + E++ L+   A  K + +        P  ++ D+  
Sbjct: 726 LDFSKIESGKLDLEAFPFSLRTCLEESLDLLATKAASKSLELGYFIDAYTPNEVVGDMAR 785

Query: 704 VKQIALNILSNAIHFTPSGGQIIISTT---------------HTSNEEVILRVRDTGVGM 748
           V+QI +N+LSNA+ FT  G ++++S +               ++++ ++ + V DTG+G+
Sbjct: 786 VRQILVNLLSNAVKFTARG-EVLVSVSAKPLFSDLELTAKSMYSTHYQIEVAVSDTGIGI 844

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS------------ 796
               + +  K F Q+  S   +  GTGLGL +++ + +   GK ++ S            
Sbjct: 845 PVDRMNRLFKSFSQVDASTNRQYGGTGLGLAISQRLAEMMGGKMWVVSGDAIGGHPPENW 904

Query: 797 -----TPAKGTLIEIIFPLYDTSH 815
                TP +G+       +  +S 
Sbjct: 905 QINKDTPTQGSTFYFSI-VVQSSQ 927



 Score = 48.1 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/122 (11%), Positives = 33/122 (27%), Gaps = 4/122 (3%)

Query: 93  GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPI 152
           G ++  S      +G     +IG           ++  +   +++  Q   Y  T     
Sbjct: 384 GLIRYASPACSLLLGYEPESLIGQHPSKFFHPDDLNTLSKTLEIVLSQKVSYTLTYRIRH 443

Query: 153 EGTNLYVPIDLAALPIYS-RNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
           +    Y+  +  +  IY             G+              +  +     L++I 
Sbjct: 444 KN-GEYIWFETTSRAIYHPETGRVQ--EILGVSRDISDRKQREQELQDSEASIRSLYQIT 500

Query: 212 KG 213
             
Sbjct: 501 SS 502


>gi|22124886|ref|NP_668309.1| phosphate regulon sensor protein [Yersinia pestis KIM 10]
 gi|45440578|ref|NP_992117.1| phosphate regulon sensor protein [Yersinia pestis biovar Microtus
           str. 91001]
 gi|51595268|ref|YP_069459.1| phosphate regulon sensor protein [Yersinia pseudotuberculosis IP
           32953]
 gi|108808688|ref|YP_652604.1| phosphate regulon sensor protein [Yersinia pestis Antiqua]
 gi|108811050|ref|YP_646817.1| phosphate regulon sensor protein [Yersinia pestis Nepal516]
 gi|149364951|ref|ZP_01886986.1| phosphate regulon sensor protein PhoR [Yersinia pestis CA88-4125]
 gi|162420839|ref|YP_001607631.1| phosphate regulon sensor protein [Yersinia pestis Angola]
 gi|165926600|ref|ZP_02222432.1| phosphate regulon sensor kinase PhoR [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165935880|ref|ZP_02224450.1| phosphate regulon sensor kinase PhoR [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166011053|ref|ZP_02231951.1| phosphate regulon sensor kinase PhoR [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166212905|ref|ZP_02238940.1| phosphate regulon sensor kinase PhoR [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167398676|ref|ZP_02304200.1| phosphate regulon sensor kinase PhoR [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167421663|ref|ZP_02313416.1| phosphate regulon sensor kinase PhoR [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167423210|ref|ZP_02314963.1| phosphate regulon sensor kinase PhoR [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167468098|ref|ZP_02332802.1| phosphate regulon sensor kinase PhoR [Yersinia pestis FV-1]
 gi|186894285|ref|YP_001871397.1| phosphate regulon sensor protein [Yersinia pseudotuberculosis
           PB1/+]
 gi|218930233|ref|YP_002348108.1| phosphate regulon sensor protein [Yersinia pestis CO92]
 gi|229838809|ref|ZP_04458968.1| sensory histidine kinase in two-component regulatory system with
           PhoB [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229896038|ref|ZP_04511208.1| sensory histidine kinase in two-component regulatory system with
           PhoB [Yersinia pestis Pestoides A]
 gi|229899377|ref|ZP_04514520.1| sensory histidine kinase in two-component regulatory system with
           PhoB [Yersinia pestis biovar Orientalis str. India 195]
 gi|229901276|ref|ZP_04516398.1| sensory histidine kinase in two-component regulatory system with
           PhoB [Yersinia pestis Nepal516]
 gi|270489464|ref|ZP_06206538.1| phosphate regulon sensor kinase PhoR [Yersinia pestis KIM D27]
 gi|294504930|ref|YP_003568992.1| phosphate regulon sensor protein PhoR [Yersinia pestis Z176003]
 gi|21957720|gb|AAM84560.1|AE013701_5 positive and negative sensor protein for pho regulon [Yersinia
           pestis KIM 10]
 gi|45435435|gb|AAS60994.1| phosphate regulon sensor protein PhoR [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51588550|emb|CAH20158.1| sensory kinase in two-component regulatory system with PhoB,
           regulates pho regulon [Yersinia pseudotuberculosis IP
           32953]
 gi|108774698|gb|ABG17217.1| PAS/PAC sensor signal transduction histidine kinase [Yersinia
           pestis Nepal516]
 gi|108780601|gb|ABG14659.1| PAS/PAC sensor signal transduction histidine kinase [Yersinia
           pestis Antiqua]
 gi|115348844|emb|CAL21799.1| phosphate regulon sensor protein PhoR [Yersinia pestis CO92]
 gi|149291364|gb|EDM41438.1| phosphate regulon sensor protein PhoR [Yersinia pestis CA88-4125]
 gi|162353654|gb|ABX87602.1| phosphate regulon sensor kinase PhoR [Yersinia pestis Angola]
 gi|165916025|gb|EDR34632.1| phosphate regulon sensor kinase PhoR [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165921528|gb|EDR38725.1| phosphate regulon sensor kinase PhoR [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165990053|gb|EDR42354.1| phosphate regulon sensor kinase PhoR [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166205692|gb|EDR50172.1| phosphate regulon sensor kinase PhoR [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166960582|gb|EDR56603.1| phosphate regulon sensor kinase PhoR [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167051180|gb|EDR62588.1| phosphate regulon sensor kinase PhoR [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167057380|gb|EDR67126.1| phosphate regulon sensor kinase PhoR [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|186697311|gb|ACC87940.1| PAS/PAC sensor signal transduction histidine kinase [Yersinia
           pseudotuberculosis PB1/+]
 gi|229681205|gb|EEO77299.1| sensory histidine kinase in two-component regulatory system with
           PhoB [Yersinia pestis Nepal516]
 gi|229687779|gb|EEO79852.1| sensory histidine kinase in two-component regulatory system with
           PhoB [Yersinia pestis biovar Orientalis str. India 195]
 gi|229695175|gb|EEO85222.1| sensory histidine kinase in two-component regulatory system with
           PhoB [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229700961|gb|EEO88990.1| sensory histidine kinase in two-component regulatory system with
           PhoB [Yersinia pestis Pestoides A]
 gi|262362994|gb|ACY59715.1| phosphate regulon sensor protein PhoR [Yersinia pestis D106004]
 gi|262366918|gb|ACY63475.1| phosphate regulon sensor protein PhoR [Yersinia pestis D182038]
 gi|270337968|gb|EFA48745.1| phosphate regulon sensor kinase PhoR [Yersinia pestis KIM D27]
 gi|294355389|gb|ADE65730.1| phosphate regulon sensor protein PhoR [Yersinia pestis Z176003]
 gi|320016388|gb|ADV99959.1| sensory histidine kinase in two-component regulatory system with
           PhoB [Yersinia pestis biovar Medievalis str. Harbin 35]
          Length = 438

 Score =  291 bits (746), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 66/358 (18%), Positives = 132/358 (36%), Gaps = 35/358 (9%)

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
           +  S  E+  D + I   +G I   N    +L G+   +   +     L     S     
Sbjct: 99  RFRSGAESLPDAVVITTVDGNIFWCNGLAQQLLGFRWPEDNGQHILNLLRYPEFSQYL-- 156

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572
                    +QT  +           +  R++           +   D+++ +Q +    
Sbjct: 157 --------QQQTFSRPLTLQLNNGYYVEFRVMPY---SEGQLLMVARDVTQMRQLEG--- 202

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
                       + +F A VSHE+RTPLT + G+ E++ +Q        +       +  
Sbjct: 203 -----------ARRNFFANVSHELRTPLTVLQGYLEMMHDQELAGPLRDKA---LGTMQE 248

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN-EKRILIRTSFA 691
               +  +V  LL +S+IE+       E V +   +      VQ  +N    I  R +  
Sbjct: 249 QTKRMDGLVKQLLTLSRIEAAPNVDLNERVDIPLMLKILQHEVQALSNGRHEITFRVN-- 306

Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751
            +  ++  +   ++    N++ NA++ TP G +I +    T       +V D G G+   
Sbjct: 307 -DQLKVFGNEDQLRSAVSNLVYNAVNHTPEGTKIEVCWQQTPQG-AQFQVSDNGPGIPPE 364

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            + +  + F ++  ++  +  G+GLGL + K  +  +  +  + S    GT      P
Sbjct: 365 HVPRLTERFYRVDKARSRQTGGSGLGLAIVKHALSHHDARLEVMSEIGLGTRFIFTLP 422


>gi|308274677|emb|CBX31276.1| hypothetical protein N47_E47880 [uncultured Desulfobacterium sp.]
          Length = 514

 Score =  291 bits (746), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 86/423 (20%), Positives = 175/423 (41%), Gaps = 36/423 (8%)

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
             +            N+  + +    +  +    +  +  +E    +  SI     + + 
Sbjct: 105 DGSVTYWIAYTSPLKNERDDIVAVMEVCLDITHRKQLEENLEKSERKYYSIFNNMPNPMF 164

Query: 467 IINRE-GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
           +++ +  ++L  N +V+ ++G+  E+I+ K F     ++  +     +    SL+  + L
Sbjct: 165 VLDIDTLMVLDCNESVTTVYGFTKEEIINKSFVELFPEDEKNSYGLKMRAYSSLNKVKQL 224

Query: 526 EKITLGSTKEEK--LLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
                   K+ K   +++RI   + P      +T  DI++  + + +L  A K+A     
Sbjct: 225 -------KKDGKAIFVNIRIAPSEYPGQKVMLVTASDITQRLEVEQQLIQAGKMAT---- 273

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQ--RFGPLGNPRYIEYANYIDRSGNLVLDIV 641
              +    ++HE+  PL+ I   S     +      +      +    ID + +    I+
Sbjct: 274 -LGEMATGIAHELNQPLSVIKTVSSFFIKKISSHEAIAESTLNDMLIKIDNNVDRASRII 332

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701
           N L + ++    K  + F  V ++E +  A+++   +   + I +  +  NN+P ILAD 
Sbjct: 333 NHLRNFAR----KSEVIFAKVQVNEILERALAIFSQHLKIRGIEVVWNIENNLPVILADP 388

Query: 702 RSVKQIALNILSNAIHFTPS----------GGQIIISTTHTSNEEVILRVRDTGVGMTNY 751
             ++Q+ +N+L NA                  +III T+   N  + + V DTG G+   
Sbjct: 389 DRLEQVFINLLVNARDAIEERWKHAEPVKGDKRIIIKTSREINN-IKIEVCDTGTGIPKS 447

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
            LEK  +PF    ++    G+GTGLGL ++  +V    G     S    G    I FP+ 
Sbjct: 448 ILEKIFEPFFTTKDA----GKGTGLGLSISYGIVKDFHGSIKAVSEENNGACFTITFPIQ 503

Query: 812 DTS 814
           D++
Sbjct: 504 DST 506



 Score = 44.6 bits (104), Expect = 0.067,   Method: Composition-based stats.
 Identities = 18/144 (12%), Positives = 38/144 (26%), Gaps = 8/144 (5%)

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
           +T + +  + I+  +  ++ E     I I +RE  ++  N   S  F             
Sbjct: 15  ETSMTRSGLNIQQSEYQTLFELVPCLITIQDREFRLIRYNHLFSDHF----HPEHGAYCY 70

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM 558
              +          +            E+ +                 K          M
Sbjct: 71  QAYKNRNSRCEKCLVAMTFDDGKSHYGEESSTNVDGSVTYWIAYTSPLKNERDD-IVAVM 129

Query: 559 H---DISEWKQEKNKLSHAKKIAE 579
               DI+  KQ +  L  +++   
Sbjct: 130 EVCLDITHRKQLEENLEKSERKYY 153


>gi|86356892|ref|YP_468784.1| two-component sensor histidine kinase protein [Rhizobium etli CFN
           42]
 gi|86280994|gb|ABC90057.1| probable two-component sensor histidine kinase protein [Rhizobium
           etli CFN 42]
          Length = 513

 Score =  291 bits (746), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 105/446 (23%), Positives = 190/446 (42%), Gaps = 11/446 (2%)

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
           L      +    + + + R      +A+  +  I  +   S A+                
Sbjct: 23  LSRTGGGEAVRQRELAILRRLVLLSSAALVVAPIGLSAVTSPAVALPAGVAMVCAAFLFS 82

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
             G               +       ++   T   +  ++  G + +      + F   +
Sbjct: 83  AVGSIALARQGSSAGIAAQSAEDFFLTV---TPGLVLFLDPHGSVATIGGRDRRDFLAWM 139

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS---TKEEKLLSLRIIIK 546
            D   + F   +  +   +    L ++   +   +++           + +   LR+ + 
Sbjct: 140 RDPKGRGFLEQVHVSDRILFLQALDDLRRGEDAASVDLRLDRPSVSRDQRQFAYLRMDMT 199

Query: 547 KLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
                          + D+S  +Q + +  +    AE  +  KS FLA VSHE+RTPL A
Sbjct: 200 ARRDVDGELAAVIAQLRDVSIEQQLRAEAQNRAADAESANDAKSRFLAAVSHELRTPLNA 259

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           I+GFS+++  + FG   N R  EY + +  SG  +L +VN +LD+SKIE+G+  L  +  
Sbjct: 260 ILGFSDILIGEYFGKFENDRQREYVSLVRESGAHLLSVVNTMLDMSKIEAGRYELILDAF 319

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
            +  +V    S++ L A  K + + +     +  I+AD R+++QI +N++ NA+ FT +G
Sbjct: 320 DISSSVRSCESMLALQAKTKGVTLTSRIQRGLGEIVADQRAIQQILINLVGNAVKFTEAG 379

Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
           G + +         + L V DTG+G+   +L    +PF QI N    R EG+GLGL L K
Sbjct: 380 GVVSVDAAARD-GILKLTVSDTGIGIPADKLAMLGQPFVQIQNDYTRRFEGSGLGLSLVK 438

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIF 808
            +V  + G F I S P +GT+I +  
Sbjct: 439 GLVALHGGNFAIASRPGEGTIITVEI 464


>gi|257059372|ref|YP_003137260.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8802]
 gi|256589538|gb|ACV00425.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8802]
          Length = 1002

 Score =  291 bits (746), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 78/251 (31%), Positives = 131/251 (52%), Gaps = 12/251 (4%)

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           KQ +  L    + A   +  KS FLA++SHE+RTPL AI+GF++++         + +  
Sbjct: 510 KQSQVILEEKTRQANAANLAKSQFLAKMSHELRTPLNAILGFTQMMNRD---SSLSSQQQ 566

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           EY   I+RSG  +L ++ND+L++S+IE+G++ L+    +L E +     L+ L A  K +
Sbjct: 567 EYLGIINRSGEHLLSLINDVLEMSRIEAGQLTLNQTCFNLHELIKSVKELLTLKALSKGL 626

Query: 685 LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTT------HTSNEEV 737
            +       +P+ I  D   ++QI +N++ NAI FT  G  I +  +      +T    +
Sbjct: 627 ELTVHQDEELPKYIEGDESKLRQIIVNLVGNAIKFTHVG-HIDLYLSVLSHQPYTKEMML 685

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
            L V+DTG+G+   ELE   + F Q  N+ Q + EGTGLGL +++       G   + S 
Sbjct: 686 QLEVKDTGIGINQDELETIFEAFKQTENNFQSK-EGTGLGLSISRQFARLMGGDITVQSQ 744

Query: 798 PAKGTLIEIIF 808
             +G+      
Sbjct: 745 LGQGSTFTCTI 755


>gi|218246325|ref|YP_002371696.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8801]
 gi|218166803|gb|ACK65540.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8801]
          Length = 1002

 Score =  291 bits (746), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 78/251 (31%), Positives = 131/251 (52%), Gaps = 12/251 (4%)

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           KQ +  L    + A   +  KS FLA++SHE+RTPL AI+GF++++         + +  
Sbjct: 510 KQSQVILEEKTRQANAANLAKSQFLAKMSHELRTPLNAILGFTQMMNRD---SSLSSQQQ 566

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           EY   I+RSG  +L ++ND+L++S+IE+G++ L+    +L E +     L+ L A  K +
Sbjct: 567 EYLGIINRSGEHLLSLINDVLEMSRIEAGQLTLNQTCFNLHELIKSVKELLTLKALSKGL 626

Query: 685 LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTT------HTSNEEV 737
            +       +P+ I  D   ++QI +N++ NAI FT  G  I +  +      +T    +
Sbjct: 627 ELTVHQDEELPKYIEGDESKLRQIIVNLVGNAIKFTHVG-HIDLYLSVLSHQPYTKEMML 685

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
            L V+DTG+G+   ELE   + F Q  N+ Q + EGTGLGL +++       G   + S 
Sbjct: 686 QLEVKDTGIGINQDELETIFEAFKQTENNFQSK-EGTGLGLSISRQFARLMGGDITVQSQ 744

Query: 798 PAKGTLIEIIF 808
             +G+      
Sbjct: 745 LGQGSTFTCTI 755


>gi|317139765|ref|XP_001817749.2| histidine kinase D5 [Aspergillus oryzae RIB40]
          Length = 1017

 Score =  291 bits (746), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 87/548 (15%), Positives = 184/548 (33%), Gaps = 75/548 (13%)

Query: 325 TVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
            ++  P+  F+     G + + N  F    + +  +        +           +  +
Sbjct: 1   MLNSVPLHIFLAKPQSGEVIWTNSKFDAYRRSQPQEQKLRDPWQN----IHSSEREHVSQ 56

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
                    +      R+     +        F      +   E +   G   +  +  I
Sbjct: 57  EWANALRTGSQFTERVRVKRF-NDESAYRWFIFRANPLLSSTGEVLYWIGSFLDIHEQHI 115

Query: 443 NKRKMEIEVMQL------CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
            + K   E  +        +   +    +        ++  N       G  +E+ L   
Sbjct: 116 AELKAAQEREKFAIDAKYRAFSNSIPQIVFEATEFRGLIFVNEQWHLYTGQKLEEALNFG 175

Query: 497 FTVFLEQNTPSV--------------------------------MNHYLTEILSLDLRQT 524
           F   L  +                                    +   L E++   +   
Sbjct: 176 FAKHLHPDDLEKCGVLSVYLSESQKENTVSGLDTTLQERHLANGVTPALEELVRRGVASV 235

Query: 525 ---------LEKITLGSTKEEKLLSLRIIIKKLP------FSSCYSLTMHDISEWKQEKN 569
                            +K        + + ++         + +  T  DI++ K  + 
Sbjct: 236 QKDENGRVFYSTEIRLRSKGADFRWHLVRLVRVETSSFGSGEASWYGTCTDINDRKNLER 295

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L+ A +    +   K+ F + +SHEIRTPL  I+G    I +               + 
Sbjct: 296 ELNKAMQQLNNQMESKTKFFSNMSHEIRTPLNGILGTIPFILDTHLDT----DQRRMLDT 351

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I  S   + ++V+++LD+S++E+GKM+L      +   + + I  V   A +K + I   
Sbjct: 352 IQNSSTNLRELVDNILDVSRVEAGKMSLVNSWFHVRSVIEDVIDTVSSRAIDKGLEINYL 411

Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---------VIL 739
              ++P  ++ D   ++Q+ +N++ NA+ FT  G +I I  +               +  
Sbjct: 412 MDVDVPPMVIGDRFRIRQVLINLVGNAVKFTSQG-EIHIRCSINHGTATLSKETELLLNF 470

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V DTG G +  + E+ M+ F Q+  +   +  G+GLGL L+K +V+ + G+    S   
Sbjct: 471 DVVDTGKGFSARDAERLMQRFSQLGQNGSQQHAGSGLGLFLSKQLVEMHGGRLTPSSKEG 530

Query: 800 KGTLIEII 807
           +G      
Sbjct: 531 QGAKFSFY 538


>gi|301163596|emb|CBW23147.1| putative two-component system sensor kinase/response regulator
           fusion protein [Bacteroides fragilis 638R]
          Length = 1022

 Score =  291 bits (746), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 124/741 (16%), Positives = 240/741 (32%), Gaps = 49/741 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGN-YAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQNTW 143
            W  D    L     E     G      +                   I  D+L   +  
Sbjct: 156 LWEFDVCTRLFYA--ENEPLNGYDPTQALTIEDYKKQIHPEDWKKAEIILLDMLSGCDCL 213

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPI-YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
           Y       +  T+ +    L   P     + +   + GF      R +N      K L +
Sbjct: 214 YEIDFRIRLSDTSEWQYCKLNCTPYERGTDGKVIKYVGF------RKNNTELQRRKLLQE 267

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
              +   +      VE +   +F  +            +  +   + + + ++     + 
Sbjct: 268 NILNSIPLPIHIKDVEDDFRYVFCNEESMRMFGTHEGETVCSVLDSEQAERMQKTDLEVF 327

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
           T+ +     +     I  +  +                  L+ R    L         + 
Sbjct: 328 TTGKPYFGVE---RIILKDGRSYDTIVRKNIIYDGTKRLLLNIRWDQKLQNDLKRRAKVL 384

Query: 323 PETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
             +++      + Y       +           ++D              P         
Sbjct: 385 SMSMEVMNAYTWFYEPSKQRVSFGEGFDKIGRNALDINSFEKFAEC--VHPDDRQRFVDT 442

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
              + + D        R                +              +G+       + 
Sbjct: 443 MDAVLKQDSGEWDIEYRADLRGNGNYEWWKTRGVLETSILNDHPYQYVSGMSISIESYKQ 502

Query: 443 NKRKMEIEVMQL-------CSILEATSDGIAIINREGIILSTN----RAVSKLFGYPVED 491
            +  +     +L         +L  T+ G+A I  + ++   N     +      Y   +
Sbjct: 503 TELTLLKNKEKLNKLIRQNELVLNNTNSGLAYITTDYVVQWENVSVCSSSLSFEAYKRGE 562

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
              K            V++  L       ++  LE          +++ +          
Sbjct: 563 CCYKSAHNRTSPCDNCVLSKVLVSRQMEKIKFHLE--------NNRIVEVLATPVFNESE 614

Query: 552 --SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                 + + DI++ ++   +L  AK +AE+    KS FLA +SHEIRTPL AI+GFS++
Sbjct: 615 EIDGIVIRVDDITDRERMIEELRQAKLLAEQSDKLKSAFLANMSHEIRTPLNAIVGFSDL 674

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           + N            EY   I+ +  L+L ++ND+LD+SK+ESG + L +E   L E   
Sbjct: 675 LMNSEEQGDKE----EYMQIINTNNELLLKLINDILDLSKLESGSVELKYEEFDLAEYFD 730

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
              S ++      ++ +      ++ R+  D   V Q+  N ++NAI +TP G    I  
Sbjct: 731 SMASSMKQRVTNPKVQLVAVNPYSVCRVRLDKNRVAQVVTNYVTNAIKYTPQG---TIEM 787

Query: 730 THT-SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
            +   +  + L VRDTG+G+   +  K    F ++        +GTGLGL + KA+ ++ 
Sbjct: 788 GYEVVDAGIRLYVRDTGIGIPEEKKRKVFHRFEKLD----EFAQGTGLGLSICKAITESM 843

Query: 789 MGKFYIFSTPAKGTLIEIIFP 809
            G     S  ++G+L   + P
Sbjct: 844 GGSVGFESEYSRGSLFWAVLP 864



 Score = 44.6 bits (104), Expect = 0.061,   Method: Composition-based stats.
 Identities = 19/143 (13%), Positives = 46/143 (32%), Gaps = 10/143 (6%)

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRKPFTVFLEQNTPSVMNHYL 513
            +I E    G+ + + +G ++  N    K+ G    +D+L          N P  M   L
Sbjct: 16  QTIYENLPVGMELYDGDGYLIEINSVGLKMMGVKDKQDMLGINIFE--NPNIPVEMKRRL 73

Query: 514 TEILSLDLRQTLEKIT-------LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQ 566
               ++      +          + S      +++ +++ +      +     D++E   
Sbjct: 74  RAGENIRFTVKYDFDLAKAHYPTVLSGISYFEITVSVVLDENKEIDKFLFIAQDVTEAVH 133

Query: 567 EKNKLSHAKKIAEKESSHKSDFL 589
            +  L  +K+            L
Sbjct: 134 TQEILRQSKQKTALAMQAAEVML 156


>gi|229017928|ref|ZP_04174806.1| hypothetical protein bcere0030_24640 [Bacillus cereus AH1273]
 gi|229024149|ref|ZP_04180616.1| hypothetical protein bcere0029_24730 [Bacillus cereus AH1272]
 gi|228737145|gb|EEL87673.1| hypothetical protein bcere0029_24730 [Bacillus cereus AH1272]
 gi|228743353|gb|EEL93475.1| hypothetical protein bcere0030_24640 [Bacillus cereus AH1273]
          Length = 581

 Score =  291 bits (746), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 89/507 (17%), Positives = 177/507 (34%), Gaps = 41/507 (8%)

Query: 314 YFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                E      +   P+    +  +G+    N    ++T Y + + I     L  L   
Sbjct: 102 LLSRKEEELHTILQNMPVMVDALDYNGDFVLWNRECEIVTGYTADEIIGNPNALQLLYPD 161

Query: 373 PKLSDNNAIKPVML----YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
                    K +         + +    +  + TI W+                      
Sbjct: 162 HNYRHQIQNKFLTRGKNFRDWEMSLTCKNGEIKTIMWSN-----------ISEQFPVTGF 210

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
               +  +    +  + +++ +  +L  I +A  D   +   +G I+         F  P
Sbjct: 211 SYWAVGVDITHLKAIEGQLKQQTSELELIFKALPDLCFLTEDDGTIIDYKAGSPTKFYVP 270

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            E  + K F   L           + ++        +E           +         L
Sbjct: 271 AEAFMGKKFYEILPSPVAQQFQEAIRQLKEEGKNVIVEYPLTI---NGSIDFFEARCLPL 327

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                  + + DI+E K+ +  L+ +  +A           A V+HE+R PLT I GF +
Sbjct: 328 LQDK-IMIIVRDITERKKAEELLNKSDTLA-----AIGQLAAGVAHEVRNPLTVIKGFIQ 381

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
                    +       Y + +      +  I+ + L I+K +     +  E  ++ +  
Sbjct: 382 ------LFQINKEDQERYFDLMLSEIERIEVILQEFLSIAKTD----EISTEEKNIYQVF 431

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
              +SL+   A    I +     ++   I      +KQ+ +NIL N+I   P GG+I I 
Sbjct: 432 KNVVSLMNTKAIMTNIQVELFADSDELAIECSENQLKQVFINILQNSIEAMPDGGKISIH 491

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
               + + VI+ V D G+G+    +++  +PF         + +GTG+GL L+  +V+++
Sbjct: 492 MKEINEDGVIIAVVDEGIGIPEERIKRLGEPFY------STKEKGTGIGLMLSYKIVESH 545

Query: 789 MGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            G   I S    GT + I  P   +++
Sbjct: 546 QGTISIMSDVGVGTTVTIFLPKIQSAN 572


>gi|163797110|ref|ZP_02191065.1| ATP-dependent protease peptidase subunit [alpha proteobacterium
           BAL199]
 gi|159177626|gb|EDP62179.1| ATP-dependent protease peptidase subunit [alpha proteobacterium
           BAL199]
          Length = 507

 Score =  291 bits (746), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 76/413 (18%), Positives = 166/413 (40%), Gaps = 35/413 (8%)

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII 474
                +     + M             + + +   E   L  ++E+  D + +I+  G +
Sbjct: 112 LSAVGEVGPVADLMLALERADRHTLEWVERSRQRSESRDL--VIESIPDPLLLIDPRGRV 169

Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
              N    + FG   + I+ +  +  +       +   + ++L+ +    +E       +
Sbjct: 170 ALANSEARRQFG---KQIVGRDLSTVIRH---PGILATVRQVLAGEPGGDVEIALAAPVE 223

Query: 535 EEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
               + +  +++  P  +   +   D+S  ++ +                + DF+A VSH
Sbjct: 224 RVFNVRIEALMEPEPDGASALMLFVDLSAIRRTE--------------QMRVDFVANVSH 269

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           E+RTPL  ++GF E ++              +   +   GN +  +V DLL +S+IE  +
Sbjct: 270 ELRTPLATLLGFIETLQGPARD--DAEARDRFLEIMRVQGNRMSRLVQDLLSLSRIEISE 327

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714
                E + L+  ++   + + L A  K + +       +P+++     + Q+  N+L N
Sbjct: 328 HKPPSERIDLEPMLNSVKATLDLEARRKDMRVGLEVDATLPQVVGAADELTQVVQNLLDN 387

Query: 715 AIHFTPSGGQIIISTTHTS-----------NEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
           AI +   G +I ++                 + V + VRD G G+    + +  + F ++
Sbjct: 388 AIKYGKPGTEITVAARRADRVPASYPGGPSGKAVAIAVRDRGDGIPAEHIPRLTERFYRV 447

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
             ++     GTGLGL + K +V  + G   I STP +G++  +  P+ + + P
Sbjct: 448 DAARSRDLGGTGLGLAIVKHIVSRHRGTLTIHSTPGEGSVFTVYVPVGEPTAP 500


>gi|309790734|ref|ZP_07685283.1| PAS sensor protein [Oscillochloris trichoides DG6]
 gi|308227225|gb|EFO80904.1| PAS sensor protein [Oscillochloris trichoides DG6]
          Length = 871

 Score =  291 bits (746), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 107/570 (18%), Positives = 209/570 (36%), Gaps = 82/570 (14%)

Query: 317 EGENLTPETVDKCPIPFFVY----SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
           +        ++   +   +     +   + Y NP+F  LT Y   + I     +    + 
Sbjct: 36  QSNQTFHAALEAMSVGIVITQLKGADHRIIYVNPAFSHLTGYSREELIGQPVEMLRSPNP 95

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
              + N   + +      +     +  L   + +               +         G
Sbjct: 96  DLGALNILDEAI------QKQQPCTVVLRNQRKDGTPYWN-ELTASPIFDAQHGCSGFIG 148

Query: 433 IEPEDVDTRINKRKMEIEVMQ------------------------LCSILEATSDGI--- 465
            + +       +  +  ++                          L  +LE     +   
Sbjct: 149 FQTDVTARVEAEATVTQQLRYAEALATCSSVLLSSHSSPDAYQQTLAHVLEIMRQTVQAD 208

Query: 466 ---------AIINREGIIL------STN---------RAVSKLFGYPVEDIL---RKPFT 498
                    A       +         N          + +++  +P E +     + + 
Sbjct: 209 RVTIYRYLEADTGMAERVHSMQLLAYANGPDLPPQRPSSYTEMLDFPTELVALVEARSYF 268

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM 558
                        +   +    +R  + +  +        +S+    +   + +     +
Sbjct: 269 NGPVVKRFGQHPAFQRYLDDNQIRSVIFQPLIIQGTWWGHISVNDHHEARQWDAMTVRFV 328

Query: 559 HD-----IS--EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
                  I+  E  Q    L  AK+ AE     KS FLA +SHEIRTPL A+IG    + 
Sbjct: 329 RTAAEMLITFAESWQTAQALIAAKEAAEAADKAKSAFLAMMSHEIRTPLNAVIG----MS 384

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
           +       +    EYA  I  SG  +L ++ D+LD+S+IE+G+M L  +P SLD  +SE 
Sbjct: 385 SLLLNSDLSELQHEYATTIGTSGKTLLALITDILDLSRIEAGQMVLEQQPFSLDTCLSET 444

Query: 672 ISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
           +S+V   A    +++++     +P  +  D+  ++QI +N+LSNAI FT  G ++++S  
Sbjct: 445 LSIVAHAATTHGLMLKSQVRPGLPALVYGDVNRLRQIVVNLLSNAIKFTRRG-EVVLSAE 503

Query: 731 HTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
                     + ++VRDTG+G++  ++E+   PF Q  +S   R  GTGLGL +++ + +
Sbjct: 504 SQPQANGYHHITIQVRDTGIGISAEQIERIFHPFVQADSSTTRRYGGTGLGLAISRQLAE 563

Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
              G   + S P +G+   +   L     P
Sbjct: 564 LMGGTLTVTSVPERGSTFTLRLSLQAVDVP 593



 Score = 76.2 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 49/141 (34%), Gaps = 9/141 (6%)

Query: 447 MEIEVMQLCSILEATSDGIAII---NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
           +        + LEA S GI I      +  I+  N A S L GY  E+++ +P  +    
Sbjct: 34  LGQSNQTFHAALEAMSVGIVITQLKGADHRIIYVNPAFSHLTGYSREELIGQPVEMLRSP 93

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMH 559
           N      + L E +      T+  +     K+       +    +  +      +     
Sbjct: 94  NPDLGALNILDEAIQKQQPCTV--VLRNQRKDGTPYWNELTASPIFDAQHGCSGFIGFQT 151

Query: 560 DISEWKQEKNKLSHAKKIAEK 580
           D++   + +  ++   + AE 
Sbjct: 152 DVTARVEAEATVTQQLRYAEA 172



 Score = 68.5 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 33/293 (11%), Positives = 79/293 (26%), Gaps = 7/293 (2%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI-LHIDPNNHIGDLLKRQNTWYGKTT 148
            A   +  ++       G    ++IG  +  +      +   N + + +++Q        
Sbjct: 59  GADHRIIYVNPAFSHLTGYSREELIGQPVEMLRSPNPDLGALNILDEAIQKQQPCTVVLR 118

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +GT      +L A PI+      SGF GF          +  A   +  +    L 
Sbjct: 119 NQRKDGTPY--WNELTASPIFDAQHGCSGFIGFQT--DVTARVEAEATVTQQLRYAEALA 174

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHL-RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE- 266
                  S            +    + R   +   +T Y   + D    E+   +     
Sbjct: 175 TCSSVLLSSHSSPDAYQQTLAHVLEIMRQTVQADRVTIYRYLEADTGMAERVHSMQLLAY 234

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
           ++ P+       +  +             ++  F     +      A+    ++    +V
Sbjct: 235 ANGPDLPPQRPSSYTEMLDFPTELVALVEARSYFNGPVVKRFGQHPAFQRYLDDNQIRSV 294

Query: 327 DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
              P+       G++   +          +V  +  A  +         +   
Sbjct: 295 IFQPLIIQGTWWGHISVNDHHEARQWDAMTVRFVRTAAEMLITFAESWQTAQA 347


>gi|229196820|ref|ZP_04323561.1| hypothetical protein bcere0001_23750 [Bacillus cereus m1293]
 gi|228586543|gb|EEK44620.1| hypothetical protein bcere0001_23750 [Bacillus cereus m1293]
          Length = 579

 Score =  291 bits (746), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 91/508 (17%), Positives = 175/508 (34%), Gaps = 41/508 (8%)

Query: 314 YFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                E      +   P+    +  +G+    N    ++T Y + + I     L  L   
Sbjct: 91  LLTRKEEELHTILQNMPVMVDALDYNGDFVLWNRECEIVTGYTAEEVIGNPNALRLLYPD 150

Query: 373 PKLSDNNAIKPVML----YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
                    K +         +      +  + TI W+                      
Sbjct: 151 HDYRHEIQKKFLTRGKNFRDWEMRLTCKNGEIKTIMWSN-----------ISEQFPVSGF 199

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
               +  +    +  + K+  +  +L  I +A  D   +   +G I+         F  P
Sbjct: 200 SYWAVGVDITHLKAIEEKLIQQTSELELIFQALPDLCFLTEDDGTIIDYKAGSPTKFYVP 259

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            E  + K F   L  +        + ++        +E     +   +           L
Sbjct: 260 AEAFMGKKFYEVLPTSVAQKFQEAIFQVKEKGTNAIVEYPLTINESIDFF---EARCLPL 316

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                  + + DI+E K+ +  L+ +  +A           A V+HE+R PLT I GF +
Sbjct: 317 LHDK-IMIIVRDITERKKTEELLNKSDTLA-----AIGQLAAGVAHEVRNPLTVIKGFIQ 370

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
                    +      +Y + +      +  I+ + L I+K +     L  E  +L +  
Sbjct: 371 ------LFQINKEDQEKYFDLMLSEIERIEAILQEFLSIAKTD----ELSTEKKNLYQIF 420

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
              +SL+   A    I +     +    I      +KQ+ +NIL N+I   P GG+I I 
Sbjct: 421 KNVVSLINTKAIMTNIQVELYTDSKDIIIECSENQLKQVFINILQNSIEAMPDGGRISIH 480

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                 + +I+ V D G+G+    +++  +PF         + +GTG+GL L+  +++++
Sbjct: 481 IKEIGKDGIIISVIDKGIGIPEERIKRLGEPFY------STKEKGTGIGLMLSYKIIESH 534

Query: 789 MGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
            G   I S    GT + I  P   +  P
Sbjct: 535 QGNISIMSEVGVGTTVTIYLPKIQSKKP 562


>gi|283851563|ref|ZP_06368843.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283573097|gb|EFC21077.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 535

 Score =  291 bits (746), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 90/367 (24%), Positives = 170/367 (46%), Gaps = 29/367 (7%)

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
            +  + GI  ++ EG +++ N     + GY +E+I ++ F  F   +  ++      +++
Sbjct: 12  FDQEAVGIVQVDLEGSVIAANWKYCSITGYSIEEIEQQQFLNFTHPSYMNIQIEQTEKLI 71

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSH 573
                +T +       K+   + +R+ +                + DI++  + + +L  
Sbjct: 72  -DGSTRTFDSEQQYCRKDGTEIWVRLTVCPARDEGGRPKTLIAFVEDITDRIESEKRLRQ 130

Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
           AK+ AE+ +  KS+FLA +SHEIRTP+  ++G ++++              EY   I +S
Sbjct: 131 AKEEAEQANRAKSEFLANMSHEIRTPMNGVMGMTDLLLMSGLSGPA----REYLQLIKQS 186

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693
           G  +L I+ND+LD+SKIESGK  L  +  SL +++   +  ++L A +K +  R   A +
Sbjct: 187 GTSLLQIINDILDLSKIESGKFVLDCQAFSLRDSLETILHPLRLGARDKGLDFRHVIAAD 246

Query: 694 IPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV------ILRVRDTGV 746
            P  +L D   + Q+  N++ NAI FT  G  + +S        +      + RV+D G+
Sbjct: 247 APDRLLGDKGRLGQVLTNLVGNAIKFTEKG-MVRLSVEPDPEAALPQTVRFLFRVQDDGI 305

Query: 747 GMTNYELEKAMKPFGQIPNS------QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           G+    L    +PF Q+  S          G        ++K +V    G+ ++ ST  K
Sbjct: 306 GIPAERLTDIFEPFSQVIKSGPAAGGGTGLGL------SISKCLVGMMAGRIWVESTVGK 359

Query: 801 GTLIEII 807
           G++    
Sbjct: 360 GSIFSFS 366



 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/140 (8%), Positives = 38/140 (27%), Gaps = 6/140 (4%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ--NTWYG 145
            +D  G +   + +     G    ++   +  + +   +++      + L      T+  
Sbjct: 21  QVDLEGSVIAANWKYCSITGYSIEEIEQQQFLNFTHPSYMNIQIEQTEKLIDGSTRTFDS 80

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +      +GT   + + L   P             F  V       +     ++  ++  
Sbjct: 81  EQQYCRKDGT--EIWVRLTVCPARDEGGRPKTLIAF--VEDITDRIESEKRLRQAKEEAE 136

Query: 206 HLHEIKKGHSSVEKEKYDIF 225
             +  K    +    +    
Sbjct: 137 QANRAKSEFLANMSHEIRTP 156


>gi|37913120|gb|AAR05382.1| probable two-component sensor [Aeromonas hydrophila]
          Length = 1252

 Score =  291 bits (746), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 108/619 (17%), Positives = 224/619 (36%), Gaps = 21/619 (3%)

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
           + ++ +   +    + ++   ++P    ++ +         +   +      +      +
Sbjct: 321 VADLLQVLRAQLGIEIEVVPVKTPKQMQQLLDGGLVDVAVLSPSAERRHRYLFSRAFVLD 380

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
                    H     +   +     +  +              +   +    + L     
Sbjct: 381 PLSYVVGIQHEARKTETLLRSGTVAMIRDFISEQAIAERYGKLATRQFDRIEDALRCVAT 440

Query: 327 DKCPIPFFVYSHGNLFYANPSFLLLTKYK-SVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
           + C +           Y N  FL        + D    G    +    ++  +   K + 
Sbjct: 441 ELCDVAVLPLRVAKY-YINSKFLDSLLITGELFDSIPIGAAFAVAPDRQILRDILDKVIT 499

Query: 386 LYRSDRTC-----IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
           +   D           S++   I W         FI          ++    +  +    
Sbjct: 500 IIPPDELEGLSNRWRVSSQQEAITWQEFVREFAVFIVLVLLLTIWVSLWGLSLHKQVRQR 559

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT-- 498
           R+ +  +  ++  +  +++ T   I        ++  N + +  FG     +L       
Sbjct: 560 RVAEMALSAQLKFIEDLVDGTPHPIYAREPRWRLILCNSSYAGFFGDEKHRLLGSSMEED 619

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM 558
                    +     T +      Q   ++ + +   +    ++                
Sbjct: 620 CRRWPFMAPLFEDLSTALRVRCTHQGDHRLPMPTGAVDVYHWVQPYYDLEGNVQGGIGGW 679

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE-VIKNQRFGP 617
            D+SE ++  ++L+ A + A++ +  KS FLA +SHEIRTP+ AIIG  E  ++  R   
Sbjct: 680 IDVSERQRLLDELALASQDAQEANRAKSTFLATMSHEIRTPMNAIIGLLELTLRRGRL-- 737

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
             +            S N +L ++ D+LDISKIESG++ L  EP  +       +++   
Sbjct: 738 --HEEDKSSLTIAHGSANDLLSLIGDILDISKIESGRLELMPEPHDIVALTGAVVTVFNA 795

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737
            A +K + +    A++   +  D    KQI  N++SNAI +T  G  + +     +++  
Sbjct: 796 LARQKNLQLEF-VADDPRWVQIDGLCYKQILSNLVSNAIKYTEQGS-VQVELQSKTSDGW 853

Query: 738 I---LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
               L +RDTG+G+   E  +  +PFGQ    + I+  GTGLGL +A+++ ++  G   +
Sbjct: 854 CTLYLVIRDTGIGIAPAEQARLFQPFGQASQPEHIQRSGTGLGLMIARSLCESMGGSLQL 913

Query: 795 FSTPAKGTLIEII--FPLY 811
            S P +GT I I    PL 
Sbjct: 914 ESEPGRGTCISIEMKLPLA 932


>gi|71735914|ref|YP_273056.1| response regulator/sensor histidine kinase [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|71556467|gb|AAZ35678.1| response regulator/sensor histidine kinase [Pseudomonas syringae
           pv. phaseolicola 1448A]
          Length = 762

 Score =  291 bits (746), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 93/380 (24%), Positives = 180/380 (47%), Gaps = 24/380 (6%)

Query: 451 VMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILRKPFTV-------FLE 502
             +L  I      G+   N+E G +       S L G P+E++L +             +
Sbjct: 41  EARLNRITSNLLVGVFEANQERGQL----PVFSYLAG-PIEELLGQNIKNVLADSTLLFD 95

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---YSLTMH 559
              P  +   +  + +    +   +         + + +RI       S     +     
Sbjct: 96  TVLPEDLTALMANMDAKSESEQPLRAFFRCRTMGREMHIRIDAVPEKTSGGSIIWKGVWV 155

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           D++E +++  KLS AK  AE+ +  KS FLA +SHEIRTP+  I+G  E++ ++   P  
Sbjct: 156 DVTEAREKSLKLSQAKDAAEEAAHAKSQFLATMSHEIRTPMNGILGLLELLHSKSMSP-- 213

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
                +    ID S   ++ ++ND+LD+SKIE  ++ LH +P  L   +S  + ++   A
Sbjct: 214 --DQQQIMLMIDESAKSLMTVLNDVLDLSKIEFNQLELHRQPTDLRALISSVVGIMAHQA 271

Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNE 735
           + K + +R + +  +   +  D   ++Q+ LN+LSNAI FT  G    ++ ++ +  + +
Sbjct: 272 HAKGLRVRITISPALASSVEVDDMRLRQVLLNLLSNAIKFTAVGTVSIKVAVTRSSDTTQ 331

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            + + V DTG+GM++ + E+  +PF Q   S      G+GLGL +++ ++    G+  + 
Sbjct: 332 HLAISVIDTGLGMSDSQRERIFEPFTQGDASITRSYGGSGLGLVISQHLIRLMGGELALE 391

Query: 796 STPAKGTLIEIIFPLYDTSH 815
           +    GT + ++ P+  +S 
Sbjct: 392 TEEHVGTNVTVVLPVSASSA 411


>gi|298242637|ref|ZP_06966444.1| GAF sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297555691|gb|EFH89555.1| GAF sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 557

 Score =  291 bits (746), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 73/248 (29%), Positives = 131/248 (52%), Gaps = 2/248 (0%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L       E+ +  KS FLA V+HE+RTPL +II +  ++         +    E+  +
Sbjct: 299 ELKEKNAALEQANHLKSQFLANVTHELRTPLHSIISYGALLLEGYVEGELSSEQEEHIQF 358

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           + R    +  +V+D+LD+SKIE+ ++ +  E + L  ++SE ++ ++  A  K + +   
Sbjct: 359 MVRRAEDLSHLVDDMLDLSKIEADRIEMKPEALELSVSLSEVVNQLKPMALNKDLYLNLE 418

Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-TSNEEVILRVRDTGVGM 748
               +P++LAD   ++QI LN++SNA+ FT  GG + I   H     +V++ V DTG+G+
Sbjct: 419 CDPQVPKVLADSHRLRQIVLNLVSNALKFTEKGG-VTIHCQHMPERAQVLISVHDTGIGI 477

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           +   L    + F Q   S   R  GTGLGL +A+ +++   G+  + S P +G+      
Sbjct: 478 SPAALGYIFEAFRQADGSTTRRFGGTGLGLTIARKLIELQGGEIAVESIPGRGSTFAFTL 537

Query: 809 PLYDTSHP 816
           P+  +  P
Sbjct: 538 PVAASISP 545


>gi|196232941|ref|ZP_03131790.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428]
 gi|196222919|gb|EDY17440.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428]
          Length = 1151

 Score =  291 bits (746), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 95/644 (14%), Positives = 205/644 (31%), Gaps = 48/644 (7%)

Query: 184  VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL 243
            +   R        G  L    + +  +     +  K    ++  Q       +   V   
Sbjct: 395  IRKLRSSIARELFG--LLILGALMVTVCDYFDAFAKPFTLLWRYQDTVMDELIGTIVVLT 452

Query: 244  TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303
                           + + +             T+      + Q   T    + E+   +
Sbjct: 453  IAAVPAASLFAYRRWFDIKSEAGEEQRTNLALQTLLTELDQRVQQGATDLAKTNEALR-I 511

Query: 304  SHRNHPSLSAYFDEGENLTPETVDKC-PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEI 362
               +H        E E    E ++    I   +   G + + N   L +T ++  + I  
Sbjct: 512  KIADHKRNGDVLRESERRFREMLENLEMIAVTLDKDGTVTFCNDYLLKVTGWRREEVIGS 571

Query: 363  AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
                  L + P+       K + L   +   I        +  + E    +         
Sbjct: 572  NWFTRYLPNNPE------AKALFLETVETGTIPRHQENPILTKSGELREIVWNN-TMLRG 624

Query: 423  QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
                 +    I  ++ +    +  +     +  S ++ +     +++ +G     +    
Sbjct: 625  TAGNFIGMASIGLDETERNRAEHALRDSERRFRSFMQHSPIAGWVVDADGRFCYVSPGYD 684

Query: 483  KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
            +LF    E ++ K  +                 +L     + LE + +G+  +  +    
Sbjct: 685  RLFSAGSESVIGKLISEVYRPEIAEPYLANNEIVLCER--RVLETVEMGTRADGSMGEFM 742

Query: 543  IIIKKLPFSSC---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
            ++   +              D++E KQ + +   A+++              ++H++   
Sbjct: 743  VVKFPMDGPDGKALVGGIALDVTERKQLEQQFLRAQRM-----ESIGTLAGGIAHDLNNS 797

Query: 600  LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
            L  I+   +V++ +      +P   E  + I  S     D+V  +L   +   G+     
Sbjct: 798  LGPILMSLDVLRMK----FPDPDSRELLDLIQSSAQRSADMVRQVLSFGRGIEGR----K 849

Query: 660  EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719
              V +   + E   +V      K I +R  F  ++  ++ D   + Q+ LN+  NA    
Sbjct: 850  MAVQVKHLLREIEKIVNDTFL-KNIQMRADFPRDLWTVVGDPTQLHQVLLNLCVNARDAM 908

Query: 720  PSGGQIIISTT--------------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
            P GG + I+                      V++RV D+G G+    LEK   PF     
Sbjct: 909  PQGGLLSITAENLTLDAQYAALNPEAKPGRYVLIRVEDSGTGIPPEILEKIFDPFFTTK- 967

Query: 766  SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
                 G+GTGLGL  +  +V ++ G   + S   +GT  ++  P
Sbjct: 968  ---EVGKGTGLGLYTSLGIVKSHGGFVRVSSEVNQGTRFQVYLP 1008



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 43/316 (13%), Positives = 89/316 (28%), Gaps = 27/316 (8%)

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP-IPFFVYSHGNLFYANPSFLLLTKYKS 356
            S    +     + +A       L    V+ CP     + +        P +  +   + 
Sbjct: 11  VSPSEENVGRREAFAAKALMKRRLCVLIVEDCPEDAQLLLNELEREGFAPDWKRVQTEEE 70

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
                    L  +L    L   +A + + L R+    +       TI    E        
Sbjct: 71  YLAHLG-PHLDLVLSDHTLPGFSAPRALSLLRARGLEVPFIIVSGTI---GEEVAVTAMR 126

Query: 417 PFEKANQFPENMPQNGIEPE--------DVDTRINKRKMEIEVMQLCSILEATSDGIAII 468
                    + M + G   +            +  +  +     QL  +L+ +   I  +
Sbjct: 127 QGATDYVLKDRMKRLGAAVDHALEQARLARQRQEAEDALHSTHAQLRQLLDHSPAVIYAL 186

Query: 469 NREG---IILSTNRAVSKLFGYPVEDILRKPFTV-FLEQNTPSVMNHYLTEILSLDLRQT 524
             EG        +  ++ L G+ V + LR  +    L           + EIL      T
Sbjct: 187 RCEGQNYTPHLVSENITTLLGFTVSETLRSDWWPGQLHAEDRQRAFAGMAEILVKGTSTT 246

Query: 525 LEKITLGSTKEEKLLSLR----IIIKKLPFSSCYSLTMHDISEWKQEKNKL---SHAKKI 577
                    K+  +  +     ++               DI+E K+ +  L      ++ 
Sbjct: 247 ---EYRVHHKDGSVRWVEDKRRLVCGASGEPKEIVGIWTDITEKKRAEEVLAGAFDRERQ 303

Query: 578 AEKESSHKSDFLARVS 593
           A + +  +   +  VS
Sbjct: 304 ARQAAGTRDLIVGGVS 319



 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 45/413 (10%), Positives = 102/413 (24%), Gaps = 36/413 (8%)

Query: 87   WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD-LLKRQNTWYG 145
            W +DA G    +S    +     +  +IG  + +V      +P     + +L  +     
Sbjct: 668  WVVDADGRFCYVSPGYDRLFSAGSESVIGKLISEVYRPEIAEPYLANNEIVLCERRVLET 727

Query: 146  KTTLWPIEGTNLYVPIDLAALPIYSRNR-EFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
                   +G+     +     P+   +     G    GI               R  +  
Sbjct: 728  VEMGTRADGSMGEFMVV--KFPMDGPDGKALVG----GIALDVTERKQLEQQFLRAQRME 781

Query: 205  SHLHEIKKGHSSVEKEKY------DIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
            S           +           D+   + P P  R   ++  L +  A +   +  + 
Sbjct: 782  SIGTLAGGIAHDLNNSLGPILMSLDVLRMKFPDPDSR---ELLDLIQSSAQRSADMVRQV 838

Query: 259  YPLLTSEESSLPEQEDFHTINL-NQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
                   E      +  H +    +     +   +Q  +    +  +    P+       
Sbjct: 839  LSFGRGIEGRKMAVQVKHLLREIEKIVNDTFLKNIQMRADFPRDLWTVVGDPTQ--LHQV 896

Query: 318  GENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVD--DIEIAGGLSTLLDAPKL 375
              NL     D  P    +         +  +  L          +       T +    L
Sbjct: 897  LLNLCVNARDAMPQGGLLSITAENLTLDAQYAALNPEAKPGRYVLIRVEDSGTGIPPEIL 956

Query: 376  SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
                            T +     L  ++ +              +++  +        P
Sbjct: 957  EKIFDPFFTTKEVGKGTGLGLYTSLGIVKSHGGF--------VRVSSEVNQGTRFQVYLP 1008

Query: 436  EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
             D          E  + +         + + +++ E I+    R   + FGY 
Sbjct: 1009 ADSAEVAEAASSETTLPR------GAGETVLVVDDERIVREITRQTLETFGYR 1055



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/242 (9%), Positives = 56/242 (23%), Gaps = 10/242 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D  G +   ++ L K  G    ++IG          + +      + ++       +  
Sbjct: 544 LDKDGTVTFCNDYLLKVTGWRREEVIGSNWFTRYLPNNPEAKALFLETVETGTIPRHQEN 603

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +   L   +    + +      F G    G+       N      +  +++F    
Sbjct: 604 PILTKSGELREIVWNNTM-LRGTAGNFIGMASIGL--DETERNRAEHALRDSERRFRSFM 660

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMK--NKVSSLTEYYAHKDDVLKTEKY--PLLTS 264
           +       V                L       V        ++ ++ +       ++  
Sbjct: 661 QHSPIAGWVVDADGRFCYVSPGYDRLFSAGSESVIGKLISEVYRPEIAEPYLANNEIVLC 720

Query: 265 EESSLPEQEDFHTIN---LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
           E   L   E     +         K         +      L       L   F   + +
Sbjct: 721 ERRVLETVEMGTRADGSMGEFMVVKFPMDGPDGKALVGGIALDVTERKQLEQQFLRAQRM 780

Query: 322 TP 323
             
Sbjct: 781 ES 782


>gi|296184967|ref|ZP_06853378.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Clostridium carboxidivorans P7]
 gi|296050749|gb|EFG90172.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Clostridium carboxidivorans P7]
          Length = 473

 Score =  291 bits (746), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 83/417 (19%), Positives = 169/417 (40%), Gaps = 15/417 (3%)

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
            ++ +    +  +           + +  +E +    +  + K+    ++   +      
Sbjct: 20  HYDNKCVKLLELLRNSIQKDLQLALDERMLEAKIKYIQATENKLRESEIKYRELFNNMRS 79

Query: 464 GIAIIN-----REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
            + I N     +  I    N+A   +      D++ K F     +   + +   +  +  
Sbjct: 80  AVIIYNVKNGGKNFIFEDLNKAAESIEKINKVDVIGKNFKKIFPKGLNTDLFKIMKHVWR 139

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS---EWKQEKNKLSHAK 575
             + + L   T     +  +      I +L       +   DIS   E ++  ++     
Sbjct: 140 TGVPKHL-YPTFYKDYKMNIYRNNYYIYRLSAEE-IVVVYDDISKSIEQQKTISEKEQII 197

Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE---VIKNQRFGPLGNPRYIEYANYIDR 632
               +    +++F A +SHE++TPL  I+G  +   +I      P+   + I   N   +
Sbjct: 198 YKTRELEKLRTEFFANISHELKTPLNIILGTIQLNKMIIENGENPINREKLINNINMEKQ 257

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
           +   +L ++N+L+D ++I+S  + L+    ++   V E    V  Y N   I I      
Sbjct: 258 NCFRLLRLINNLIDSTEIDSKFIELNMVNCNIVNLVEEITQSVAKYIN-NNISITFDTDL 316

Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752
               I  DL  V +I LN+LSN++ FT  GG I ++      + + + V+DTG+G+   +
Sbjct: 317 EEKIIACDLDKVGRIILNLLSNSVKFTEPGGSIFVNI-IDDKDYITITVKDTGIGIPQNK 375

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           L      F Q+  S   + EG+G+GL + K++V+ + G  ++ S    GT   I  P
Sbjct: 376 LNTIFDRFRQVDKSFTRKNEGSGIGLSIVKSLVEMHKGSIFVESKYGIGTKFTIKLP 432


>gi|332702075|ref|ZP_08422163.1| integral membrane sensor hybrid histidine kinase [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332552224|gb|EGJ49268.1| integral membrane sensor hybrid histidine kinase [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 675

 Score =  291 bits (746), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 75/251 (29%), Positives = 132/251 (52%), Gaps = 11/251 (4%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E  Q++ +L+ AK+ AE+ S  KS+FLA +SHEIRTP+  ++G S              +
Sbjct: 262 ELAQQREELTLAKEEAERASRAKSEFLANMSHEIRTPMNGVLGMS----RLALDMSSEAQ 317

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             E    + +SG  ++DI+ND+LD+SKIE+GK++       L + +      +Q+ A ++
Sbjct: 318 VRECLELVRQSGENLMDIINDILDLSKIEAGKIDFQHTNFDLGQTLEATFKPLQIMAAQR 377

Query: 683 RILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----- 736
            +   +     +P ++L D   ++Q+  N++ NAI FT  GG I +       +E     
Sbjct: 378 GLAFESDLDPAVPVQLLGDPGRLRQVLTNLIGNAIKFTRKGG-IKVKVALQGQQETESAC 436

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           ++  VRD+GVG+   +L++  + F Q+ ++  +   GTGLGL ++K +V    G   + S
Sbjct: 437 LLFEVRDSGVGIPADKLDRIFESFSQVRHAPDLEQGGTGLGLAISKELVRMMGGGIQVES 496

Query: 797 TPAKGTLIEII 807
              KG+     
Sbjct: 497 EVGKGSTFSFT 507


>gi|332532631|ref|ZP_08408507.1| sensory histidine kinase BarA [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332037847|gb|EGI74296.1| sensory histidine kinase BarA [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 924

 Score =  291 bits (746), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 94/351 (26%), Positives = 163/351 (46%), Gaps = 21/351 (5%)

Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530
            GI++  +   + +    +  +   P    +        +  +    S  L   +     
Sbjct: 177 SGIVIILSLVFAAILALRLSRMFMTPLNKLVL-----ATDKLVEGKRSTGLNDNMIGEFE 231

Query: 531 GSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKS 586
              +    ++  ++++K            D  E  ++      +LS AKK A+  +  KS
Sbjct: 232 LLREGLNTIAHTMVMQKDEMQKNIDQATSDYRETLEQYETSNIELSFAKKEAQDANRVKS 291

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
           DFLA++SHE+RTPL  +IGF+  +         N    +Y + I  S N ++ I++D+LD
Sbjct: 292 DFLAKMSHELRTPLNGVIGFTRQLYKTPL----NKHQKDYLDTIMLSANSLMTIISDILD 347

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVK 705
            SK+E+G M L      L +AV+E ++L+   A++K++ +       +P  +  D    K
Sbjct: 348 FSKLEAGAMELESIQFQLRDAVNEVMTLLAPSAHDKQLELSIYINQQVPDDLTGDPTRFK 407

Query: 706 QIALNILSNAIHFTPSGG-QIIISTTHTSNEE--VILRVRDTGVGMTNYELEKAMKPFGQ 762
           Q+ +N+LSNAI FT  G  ++ IS     +E   +++ V DTGVG+   + +    PFGQ
Sbjct: 408 QVLINLLSNAIKFTEKGSIKVDISHRLLDDERTSLLVSVTDTGVGIPMDKQDSLFTPFGQ 467

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE----IIFP 809
             +S   +  GTGLGL + K +V+A  G+  + S P  GT          P
Sbjct: 468 ADSSITRKFGGTGLGLIITKHIVEAMSGRITLNSAPGNGTCFTFNSVFSLP 518


>gi|228994391|ref|ZP_04154270.1| hypothetical protein bpmyx0001_50980 [Bacillus pseudomycoides DSM
           12442]
 gi|228765352|gb|EEM14027.1| hypothetical protein bpmyx0001_50980 [Bacillus pseudomycoides DSM
           12442]
          Length = 577

 Score =  291 bits (746), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 98/507 (19%), Positives = 187/507 (36%), Gaps = 33/507 (6%)

Query: 314 YFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
              + E      +   PI    +  +GN    N    L+T Y + + +     L  L   
Sbjct: 93  LLSQKEEQLHTILQNMPIMVDALDKNGNFILWNRECELVTGYAAEEIVGNPKALELLYPD 152

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
                    K  +  +S R        ++    N E    M     E+      +    G
Sbjct: 153 ESYRRQLQKKFSIRGKSFR-----DWEMNLTCKNGEIKTIMWSNISEQFPVPGYSYWAVG 207

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
           +  +    +  + +++ +  +L  I +A  D   +   +G I+         F  P E  
Sbjct: 208 V--DITHRKGIEEQLKQQTSELELIFKALPDLCFLTEADGTIIDYKAGSPAKFYVPAESF 265

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
           + K F   L           + ++   +    +E           +         L    
Sbjct: 266 MGKKFYEVLPSPVAQQFQEAIHQVQQKESTVIVEYPLTLK---GSVSFFEARCLPLLQDK 322

Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
              + + DI+E K+ +  L+ +  +A           A V+HE+R PLT I GF +    
Sbjct: 323 -IMIIVRDITERKKTEELLNKSDTLA-----AIGQLAAGVAHEVRNPLTVIKGFIQ---- 372

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
                +      +Y + +      +  I+++ L I+K +     +  E  +L   +   +
Sbjct: 373 --LFQINQEDQDKYFDLMLSEIERIEAILHEFLSIAKTD----VISTEKKNLCSILKNVV 426

Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
           SL+   A    I I     +    I      +KQ+ +NIL N+I   P+GG+I I    +
Sbjct: 427 SLINTKAIMTNIQIDLHIESKELMIDCCENQLKQVFINILQNSIEAMPNGGEISIYVKKS 486

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
             EEV + + D GVG+    +++  +PF         + +GTG+GL L+  +++++ G+ 
Sbjct: 487 EREEVTINMVDEGVGIPEERIKRLGEPFY------STKEKGTGIGLMLSYKIIESHQGRI 540

Query: 793 YIFSTPAKGTLIEIIFPLYDTSHPHDC 819
            I S    GT + I  P++ +     C
Sbjct: 541 SIMSEVGIGTSVTIYLPMFQSEQVTSC 567


>gi|158339053|ref|YP_001520230.1| two-component hybrid sensor and regulator [Acaryochloris marina
           MBIC11017]
 gi|158309294|gb|ABW30911.1| two-component hybrid sensor and regulator [Acaryochloris marina
           MBIC11017]
          Length = 1038

 Score =  291 bits (746), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 79/269 (29%), Positives = 141/269 (52%), Gaps = 26/269 (9%)

Query: 562 SEWKQEK---NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
           +  ++ +   ++L  AK  AE  +  KS FLA +SHEIRTP+ A+IG + ++ N      
Sbjct: 264 TRQQELEGMVSELQAAKHEAEAANQAKSQFLANMSHEIRTPMNAVIGMTGLLLNTPL--- 320

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
              +  ++   I  SG+ +L ++ND+LD SKIE+GK++L  +P  +   + EA+ +V   
Sbjct: 321 -EAQQQDFVETIRSSGDALLTLINDILDFSKIEAGKLDLEQQPFEIRTCIEEALLIVASK 379

Query: 679 ANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNE- 735
           A+EK + +        P  IL D+  ++Q+ +N+L+NA+ FT  G  ++ +S+    ++ 
Sbjct: 380 ASEKNLELAYLINPPTPTAILGDITRLRQVLVNLLNNALKFTGEGEVVVYVSSKPIESKD 439

Query: 736 ----------------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
                           E+   V+DTG+G+   +LE+  K F Q+  S   +  GTGLGL 
Sbjct: 440 LDAESDLEVIAEATPYEIQFDVKDTGIGIPPDKLERLFKSFSQVDASTTRKFGGTGLGLA 499

Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           ++K + +   GK ++ S  + G+      
Sbjct: 500 ISKQLSELMGGKIWVSSEVSVGSTFSFTI 528


>gi|87308035|ref|ZP_01090177.1| sensory transduction histidine kinase [Blastopirellula marina DSM
           3645]
 gi|87289117|gb|EAQ81009.1| sensory transduction histidine kinase [Blastopirellula marina DSM
           3645]
          Length = 661

 Score =  291 bits (746), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 99/505 (19%), Positives = 184/505 (36%), Gaps = 14/505 (2%)

Query: 317 EGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
           + E  T   V + P      S       +  +       +   I        L    +  
Sbjct: 2   KSERFTTLIVCRNPDLIAAVSSELSSSQSVEWRFHAVADAKSIIGDQPVEICLFLIDRTH 61

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE--NMPQNGIE 434
                +   L R  +    A   +   + + E  L       ++                
Sbjct: 62  P-LREEMSELRRVRQRLPQAVVIVVGDEKSGEVELDAWSSGADEFAPTSHLSAAAIERTV 120

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
              V+ R+   K+          +   + G+   +R             +     +D+  
Sbjct: 121 MRCVERRMTADKLRHRERWYRVAVAEGNVGLWRWDRPCNFFYLADHFQDMLSIAHDDLPS 180

Query: 495 --KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
               +   +  +             S    + + +  +    +     L         + 
Sbjct: 181 DLAQWIERIHPDDRHATLDAADAHFSGRSDRFVVEHRIRRGDDGYRWYLSSGCVAENDAD 240

Query: 553 C--YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
                    DIS  K+ +  L  AK+ AE     KS+FL  +SHE+RTPL AI+G+SE++
Sbjct: 241 RKQILGASTDISARKEAEFALQRAKRAAESAVRVKSEFLTNMSHELRTPLAAILGYSEIM 300

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
           ++           +E  + I R+G  +L+++ D+L+ S+IESGK+ +   P    E +  
Sbjct: 301 EDHAVTS----ESLEAVDTIRRNGQHLLELIGDILEFSRIESGKLEVSAMPTPAYEFLKS 356

Query: 671 AISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
                +  A++K +      ++ IP  I+ D   V+QI   +++NA+ FT +G +I ++ 
Sbjct: 357 TFESFRELADDKGLRFVVDVSDQIPEMIITDPVCVRQILWRLVTNAVKFTDAG-EIGVAV 415

Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
                  + L VRDTG G+    L    +PF Q  NS   R +G GLGL + + +     
Sbjct: 416 RVAD-GNLELNVRDTGCGIPAEMLSSIYQPFRQADNSSTRRHDGAGLGLAICQKLSQMLG 474

Query: 790 GKFYIFSTPAKGTLIEIIFPLYDTS 814
           G   + S    G+   +  P+  T+
Sbjct: 475 GDISVRSQAGAGSQFTVRLPIERTA 499


>gi|298241197|ref|ZP_06965004.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297554251|gb|EFH88115.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 383

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 75/380 (19%), Positives = 163/380 (42%), Gaps = 34/380 (8%)

Query: 448 EIEVMQL-CSILEATSDGIAIINREGIILSTNRAVSKL------------FGYPVEDILR 494
           +     L  +IL++ +  +A+++  G +   N A  +              G  +  +  
Sbjct: 24  QEARDFLAQAILDSVTVMMAVLDTNGRVHIVNEAWRRQARESCSPDQLARTGIGMNYLDV 83

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554
                             +  +L         +    S+  +    + +    LP ++  
Sbjct: 84  CKHAQGTSAEEAPEAFAGIEAVLGGRQSSFTLEYPCFSSARQSWYLMSVT--PLPGNAGA 141

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
            +   DI+E K+ + +              K +F++  SHE+++PLTA+   S  +  ++
Sbjct: 142 VVAHIDITERKELEQR--------------KDEFISIASHELKSPLTALTLLSSHL-RKK 186

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                +    +    ++     +  ++NDLLD+SKI++G++    EP  LD  ++E +  
Sbjct: 187 LTENDSFMAEQMLTRMEGQVRTLTCLINDLLDVSKIQAGRLGYAKEPFDLDALINEIVET 246

Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
            QL +   R++I      +   I  D   + Q+ +N+LSNAI ++P    + IS     +
Sbjct: 247 AQLTSPGHRLMIH---GASHATISGDRDKLGQVFINLLSNAIKYSPQADHVDISLETVQD 303

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
               +R++D G+G+     ++  + F ++  S+Q    G GLGL +A+ ++  + G+  +
Sbjct: 304 G-AFVRIQDVGIGIPKERQDRLFERFYRVDTSKQNDVPGLGLGLYIAREIIKHHGGEITV 362

Query: 795 FSTPAKGTLIEIIFPLYDTS 814
            S   KG++  +  PL+ ++
Sbjct: 363 SSEEGKGSIFSVSLPLHVSA 382


>gi|226945550|ref|YP_002800623.1| integral membrane hybrid histidine protein kinase [Azotobacter
           vinelandii DJ]
 gi|226720477|gb|ACO79648.1| integral membrane hybrid histidine protein kinase [Azotobacter
           vinelandii DJ]
          Length = 914

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 81/263 (30%), Positives = 137/263 (52%), Gaps = 10/263 (3%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           + ++E      A + A  ++  KS FLA++SHEIRTPL  ++G  +++K  R     +  
Sbjct: 384 QLRREGLYSHRAAEEALLQNQAKSRFLAKMSHEIRTPLNGVLGMLQLLKETRL----DHS 439

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
              Y + I  SG+ ++ ++ND+LD ++IESGK++L      L+E +S+ ++L    A EK
Sbjct: 440 QRFYVDTIASSGSTLMAVINDILDYARIESGKLSLEHIEFDLEEMLSDTLNLFTAQAMEK 499

Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS----NEEV 737
           R+ +  S    +PR I  D   +KQ+  N+LSNA+ FT  G Q+ +  +       +E +
Sbjct: 500 RLRLHMSLDEGVPRHIQGDPTRLKQVLTNLLSNALKFTSEG-QVRLDVSRRRKSDGSEHL 558

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
              V D+G+G+      +  + F Q  +S   R  G+GLGL ++K +V+   G   + ST
Sbjct: 559 YFGVSDSGIGIRQEAQARLFESFSQGDSSTTRRYGGSGLGLAISKELVEMMGGHIEVQST 618

Query: 798 PAKGTLIEIIFPLYDTSHPHDCI 820
           P  G+      PL       D +
Sbjct: 619 PGLGSRFTFNLPLQRGGEMRDEL 641


>gi|325474777|gb|EGC77963.1| sensor protein [Treponema denticola F0402]
          Length = 676

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 91/376 (24%), Positives = 169/376 (44%), Gaps = 23/376 (6%)

Query: 461 TSDGIAIINREGIILSTNRAVSKLFG---YPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
           ++    I + + + L  +    +L          I  + +   +      +      +  
Sbjct: 20  SNIAYIIFSPDYVPLFWSPEAERLLPDYLIKNTKIRLQDYLKTVLLEEDYIRLSAFIKSN 79

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI 577
                   +     S  ++  L            + + +T+ DI++ K ++  L  A++ 
Sbjct: 80  PKTAAFEAKFDKPSSLSDKTALKFSFTQ---QDDNNFFVTIDDITKQKLKERFLIIARQD 136

Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
           AEK +S +S FLA VSHEIRTP+  IIG  E+I         +    EY   ++ S  ++
Sbjct: 137 AEKANSMRSLFLANVSHEIRTPIQTIIGMMELINETNL----DEEQSEYTRQVNFSAEVL 192

Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR- 696
           L +VND+LD SK+ESG M +     +L ++V + + L+ + A++K + I    ++ IP  
Sbjct: 193 LTLVNDVLDFSKLESGNMTMERTVFNLTDSVEQTVDLISMEAHKKGLEIVVDISDKIPDF 252

Query: 697 ILADLRSVKQIALNILSNAIHFTPSG-GQIIISTTHTSNEE---------VILRVRDTGV 746
           I  D   ++Q+ LN + NA+ FT +G   + +     +N +         ++  V DTG+
Sbjct: 253 IYGDPARLQQVLLNFVKNAVKFTETGYVSVSVKLVFENNSDDPYAAKHFFILFEVADTGI 312

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+ N +  K    F Q   +   +  GTGLGL ++K ++    G+  I    ++G++   
Sbjct: 313 GVNNEQKSKIFNSFYQGNAAINRKYGGTGLGLAISKNIITMMKGQIGIKDNISRGSVFWF 372

Query: 807 IFPLYDT--SHPHDCI 820
             PL  +    PH+ I
Sbjct: 373 KIPLVPSKKKAPHESI 388


>gi|317475553|ref|ZP_07934815.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
 gi|316908257|gb|EFV29949.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
          Length = 912

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 88/405 (21%), Positives = 168/405 (41%), Gaps = 24/405 (5%)

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST- 477
               Q  E    +            +  +     +L   L+         + +   ++  
Sbjct: 372 VIIRQAAEENLIDIFGVNTTTLHQTQELLRAANNKLALALDIAHIIPWHWDLQKHAITCD 431

Query: 478 -NRA-VSKLFGYPVED----ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
            NR+      G   E     I    +   +  +    +      ++   ++   E+    
Sbjct: 432 ANRSPFELATGVKDERGVRIIHEADYFNNIHPDDAERIRDDYQALILGRVKALKEEFRTV 491

Query: 532 STKEEKLL--SLRII-IKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
             K  K     +    + +             ++  I++ K+ + +L +AK  AE+    
Sbjct: 492 IKKNGKEYINWVEARAVVEQRNEQGHPISLIGSLLIITDRKRNEQELINAKNRAEESDRL 551

Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
           KS FLA +SHEIRTPL AI+GFS ++         +    EY N I+ +  L+L +++D+
Sbjct: 552 KSAFLANMSHEIRTPLNAIVGFSSILATAEEEEEKS----EYINIIENNNQLLLQLISDV 607

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704
           LDI+KIE+G ++ ++  + L+  ++E  S   +      + +     N+   ++ +   +
Sbjct: 608 LDIAKIEAGSLDFNYSSLDLNVLMNELESTALMRITSPDVCLEMIPDNDNCWVITERNRL 667

Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764
            QI +N+L+NAI FT  G +I          ++   V DTG G+   + +K  + F ++ 
Sbjct: 668 SQIIINLLNNAIKFTQKG-KITFGYKLQKE-KIYFYVTDTGCGIPAEKQDKIFERFIKLN 725

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           N      +GTGLGL + K++VDA  G+  + S    G+      P
Sbjct: 726 NF----AQGTGLGLSICKSIVDAMGGEIGVDSKVGNGSTFWFTLP 766


>gi|294011631|ref|YP_003545091.1| putative sensor histidine kinase [Sphingobium japonicum UT26S]
 gi|292674961|dbj|BAI96479.1| putative sensor histidine kinase [Sphingobium japonicum UT26S]
          Length = 781

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 114/746 (15%), Positives = 253/746 (33%), Gaps = 57/746 (7%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH-IDPNNHIGDLLK-RQNTWYGKTTL 149
            G L E ++ L K +G          + +++     ++P++      +       G++  
Sbjct: 63  DGRL-EAADRLAKWLGKERVPAF---VSELTAPDGGLEPDDATALAQEIAAAQRAGRSFA 118

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVD---------NDPRALGKRL 200
            P+ G +    + +   P            G  ++ +                    +  
Sbjct: 119 LPVRGVDSSRLLLVRGAP----AGSVLAESGGVVLWIFDATDSQSEIQTLKGRVEQLREA 174

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSP---PPHLRMKNKVSSLTEYYAHKDDVLKTE 257
            +  + L E              +    +            +V +           L  +
Sbjct: 175 LEALAGLVEAAPFPMWHRTADMRLSLVNTAYVRAVDGENAREVIANGTELVETVGGLTPQ 234

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
                T  + +  E+    TI+  + T +     L   +  +   L              
Sbjct: 235 AAAAQTLADGTPVERMVPATIDGERRTIRVVDVPL-GAAGVAGFALDQNELEQARVEHRR 293

Query: 318 GENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
            E    + +D+       +     L + N  F+ L      + +        +LD  + +
Sbjct: 294 LEAAQRDLLDRLSAGVARFGSDRALRFWNQPFMSLFGL-DQERLADNPPFERVLDQMREA 352

Query: 377 ---DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
                N   P          ++   R           L +   P              G 
Sbjct: 353 RRLPENRDFPAWRAERRDWFLSPDPREENWLLADGTHLRVYAQPLPD-----------GG 401

Query: 434 EPEDVDTRINKRKMEIEVMQL----CSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
                + R  + ++      L     +  +   + I + + +G +   N     ++    
Sbjct: 402 LLLIFEDRTEQVQLSSARDTLLRVRTATFDNLFESIGVFSSDGRLHLWNSRFRTIWDVSE 461

Query: 490 EDILRKPFTVFLEQNTPSVMNH-----YLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
           + + + P    L +   S +        + E++     +  +++      + ++     I
Sbjct: 462 DLLAQHPRIDELMRTVQSRLAKPQQGNLVRELVRAATVERKQRVGHVGFADGRIFEFAAI 521

Query: 545 IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
                       TM D+++ ++ +  L       E+    K+ F+  +S+E+RTPLT I 
Sbjct: 522 PLP---DGNALFTMLDVTDSRRVEQVLRDRNDALEQADKVKTAFVTNMSYELRTPLTTIA 578

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           GF+E++     G L      EY + I +S N +  +++++LD+++ E+G + +   PV L
Sbjct: 579 GFAEMMSAGYAGELS-ASAKEYVDGILQSTNRLSMLIDNVLDLTQGEAGMLPVEKAPVDL 637

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724
                +A++ ++  A  K I +  S   ++  I  D R + Q   ++L NA+ +   GG+
Sbjct: 638 AVEARDAVARIKGDATAKGIDLALSLQASLGTIQGDKRRIGQALDHLLENAVRYCSRGGR 697

Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG-TGLGLPLAKA 783
           +++    T++    L V D G G+             +   ++     G  G+GLPLA+ 
Sbjct: 698 VLLHGDGTTDN-ARLVVSDNGPGINAKRQATIFDASSRTEQARN---GGKAGIGLPLARQ 753

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFP 809
           +  A+ G   + S P +GT++ I  P
Sbjct: 754 LAQAHGGTLQLVSEPGQGTMVVIELP 779



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 50/385 (12%), Positives = 102/385 (26%), Gaps = 33/385 (8%)

Query: 86  TWNIDAHGYLKEISEELPKTI-GNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144
            W+  A   L  ++    + + G  A ++I      V  +  + P       L       
Sbjct: 189 MWHRTADMRLSLVNTAYVRAVDGENAREVIANGTELVETVGGLTPQAAAAQTLADGTP-- 246

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
               + P         I +  +P+ +      G  GF +          R   +RL+   
Sbjct: 247 -VERMVPATIDGERRTIRVVDVPLGAA-----GVAGFAL--DQNELEQARVEHRRLEAAQ 298

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHL--RMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
             L +      +       +     P   L    + +++    +    D + +  + P  
Sbjct: 299 RDLLDRLSAGVARFGSDRALRFWNQPFMSLFGLDQERLADNPPFERVLDQMREARRLPEN 358

Query: 263 TSEESSLPEQEDFHTINLNQY--TKKQYFGTLQNNSKESFEY------LSHRNHPSLSAY 314
               +   E+ D+      +           L+  ++   +               LS+ 
Sbjct: 359 RDFPAWRAERRDWFLSPDPREENWLLADGTHLRVYAQPLPDGGLLLIFEDRTEQVQLSSA 418

Query: 315 FDEGENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
            D    +   T D       V+ S G L   N  F  +    S D +     +  L+   
Sbjct: 419 RDTLLRVRTATFDNLFESIGVFSSDGRLHLWNSRFRTIWDV-SEDLLAQHPRIDELM-RT 476

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASA--RLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
             S     +   L R            R+  + +          IP    N         
Sbjct: 477 VQSRLAKPQQGNLVRELVRAATVERKQRVGHVGFADGRIFEFAAIPLPDGNA-------L 529

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCS 456
               +  D+R  ++ +      L  
Sbjct: 530 FTMLDVTDSRRVEQVLRDRNDALEQ 554


>gi|291545377|emb|CBL18485.1| Signal transduction histidine kinase [Ruminococcus sp. SR1/5]
          Length = 799

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 93/457 (20%), Positives = 181/457 (39%), Gaps = 39/457 (8%)

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
           +        +   T +A   R   I  N E              +  ++        +  
Sbjct: 341 DRGYIAERLKGLETELALECR---ITLNGEERW---VRNVVIRGEIEDSEYAMIFLRDIT 394

Query: 439 DTRINKRK---MEIEVMQLCSILEATS---DGIAIIN-REGIILSTNRAVSKL---FGYP 488
           +T++   +   M  +   +  ++++     D   + +         N     +    G+ 
Sbjct: 395 ETKVESARHLQMAADNASMEQLIQSIVRLVDRFVVCDLENDRYEFYNLNGQMIYKPLGFY 454

Query: 489 VEDILR-----KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST--KEEKLLSL 541
            +  ++     K        +     ++   ++ S +     E  +L     K    + L
Sbjct: 455 HDFQMQVLEKYKTLEPLEAIDILIAPDNIRKKLKSENDIYKFEYCSLDEKTYKIASYIPL 514

Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK----ESSHKSDFLARVSHEIR 597
                KL       L   D+++ K+ + +   A K A +     +  K++FL+ +SH+IR
Sbjct: 515 EWKNVKLEK---VLLASMDVTQEKKAEIESRQALKEAYRSAENANRAKTEFLSNMSHDIR 571

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TP+ AI+G + +            R IE    I  S   +L ++N++LD+++IE GKM L
Sbjct: 572 TPMNAIVGLTAIA---GANVESQDRVIECLGKITESSRHLLGLINEVLDMARIERGKMTL 628

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAI 716
             E  +L E V   I+L +   +E +        +     +  D   ++Q+ +N++SNAI
Sbjct: 629 AQEDFNLSELVDNLITLTKPVLDEHKHNFDIHINHIEHEAVCGDSLRIQQVFVNLMSNAI 688

Query: 717 HFTPSGGQIIISTTHTSNEE-----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
            +TP GG  I S     N           + D G+GM+    +   +PF +  + +  R 
Sbjct: 689 KYTPDGGNTIFSIEEKPNGFSELGCYEFTIEDNGIGMSPEFQKIMFEPFSRADDHRTTRV 748

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           +GTGLG+ +++ +V+   G   + ST  KGT I +  
Sbjct: 749 QGTGLGMAISRNIVNLMNGTIKVDSTLHKGTKITVTI 785


>gi|108759722|ref|YP_628378.1| sensory box histidine kinase/response regulator [Myxococcus xanthus
           DK 1622]
 gi|108463602|gb|ABF88787.1| sensory box histidine kinase/response regulator [Myxococcus xanthus
           DK 1622]
          Length = 768

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 91/647 (14%), Positives = 198/647 (30%), Gaps = 63/647 (9%)

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKN--KVSSLTEYYAHKDDVLKTEK 258
           ++      E+      +      +        HL   +   +  +        +      
Sbjct: 14  EQWAHRFFELSTEPYVILGRDGVLLEANPAFGHLVGLSLTSLRGMALQDFIPIEDAAVLF 73

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
             L ++  +S      +   + +            + S+  +  +     PS + + +  
Sbjct: 74  AHLGSTSPTSRTC--RWRRPDGSWLPLSWRITAA-SESEPLYCTVQRAEEPSAAPWPES- 129

Query: 319 ENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
                   D  P   ++       + Y N  F  L     ++     G LS         
Sbjct: 130 --------DYLPFGLYLVDIRTRRVHYVNHRFCQLWGITELEGAIQRGELSHDEVIHHCL 181

Query: 377 DNNAIKPVMLYRS--DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
                   +   +  D+ C+           +      ++       +       +    
Sbjct: 182 KAGDAAEFLRLCAAPDQGCVPGLVEDEARLSDGRTLRRLSTSSSVAGDA---MRYRMFAF 238

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP-VEDIL 493
            +  +++  +  +         +++   +GI +   +   +  N  + +  GY    +++
Sbjct: 239 EDVTESKRTQEALRRSEESFRRLIDRAPEGIFVH-TQRRFIYANPTLLRALGYDDPAELM 297

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553
            KP    +  +   ++   +           L +      ++        +   + F   
Sbjct: 298 AKPIWSIVHPDDLELVKDRVHTAAVKGALAPL-REVRYLRRDGTWYDAESVGIPIEFDGH 356

Query: 554 --YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
               +   DI+E KQ +++L    ++    +       A V HEI  PLT ++       
Sbjct: 357 EAVVVMARDITERKQAQSQLLQNDRMVLAGT-----LAAGVGHEINNPLTYVMANLASAL 411

Query: 612 NQ--RFG----------------PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
               R G                P                   V +IV DL  IS+ +  
Sbjct: 412 ESVSRLGAELTRAGERGPSSVAWPATLHDAEALLKEAQEGAMRVRNIVRDLKFISRQDEE 471

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713
           +     E V + + +  +I++        R  +   +  ++PR+ AD   + Q+ LN+L 
Sbjct: 472 R----REAVDVRQPLDFSINMAASQL-RHRARLIKKY-ESVPRVYADGSRLGQVFLNLLV 525

Query: 714 NAIHFTPSG----GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
           N+    P G      I +         V++ V D+G GMT   L +   PF         
Sbjct: 526 NSAQAIPEGNAEEHHITVWVRAGPPGSVLVDVSDSGCGMTPAVLSRVFDPFFTTKP---- 581

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
            G+GTGLGL +  +++    G   + S   +GT   +  P    + P
Sbjct: 582 VGKGTGLGLSICHSLIRKQGGDITVRSELGQGTTFTVTLPTAPDAVP 628



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/357 (11%), Positives = 94/357 (26%), Gaps = 36/357 (10%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +   G L E +      +G     + GM L D   I        +   L   +       
Sbjct: 31  LGRDGVLLEANPAFGHLVGLSLTSLRGMALQDFIPIEDA---AVLFAHLGSTSPTSRTCR 87

Query: 149 LWPIEGTNLYVPIDLAAL----PIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
               +G+ L +   + A     P+Y              V      +             
Sbjct: 88  WRRPDGSWLPLSWRITAASESEPLY------------CTVQRAEEPSAAPWPESDYLPFG 135

Query: 205 SHLHEIK-KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
            +L +I+ +    V      ++        ++          ++  K             
Sbjct: 136 LYLVDIRTRRVHYVNHRFCQLWGITELEGAIQRGELSHDEVIHHCLKAGDAAEFLRLCAA 195

Query: 264 SEESSLPE--QEDFHTINLNQYTKKQYFGTLQNNSKES--FEYLSHRNHPSLSAYFDEGE 319
            ++  +P   +++    +     +     ++  ++     F +                E
Sbjct: 196 PDQGCVPGLVEDEARLSDGRTLRRLSTSSSVAGDAMRYRMFAFEDVTESKRTQEALRRSE 255

Query: 320 NLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL------------S 367
                 +D+ P   FV++     YANP+ L    Y    ++                   
Sbjct: 256 ESFRRLIDRAPEGIFVHTQRRFIYANPTLLRALGYDDPAELMAKPIWSIVHPDDLELVKD 315

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
            +  A        ++ V   R D T   A +    I+++   ++ +      +  Q 
Sbjct: 316 RVHTAAVKGALAPLREVRYLRRDGTWYDAESVGIPIEFDGHEAVVVMARDITERKQA 372


>gi|304321187|ref|YP_003854830.1| non-motile and phage-resistance protein [Parvularcula bermudensis
           HTCC2503]
 gi|303300089|gb|ADM09688.1| non-motile and phage-resistance protein [Parvularcula bermudensis
           HTCC2503]
          Length = 754

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 142/733 (19%), Positives = 260/733 (35%), Gaps = 61/733 (8%)

Query: 103 PKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPID 162
           P   G      +G     ++    +     +G LL    T     T     G NL +   
Sbjct: 17  PAATGPRPASNLGR----IAAAAFLLTGVSVGALLTAAVT--DHRTAARERGLNLGLRSL 70

Query: 163 LAALPIYSRNREFSGFRGFGIVHVNRV-DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEK 221
            +   +            FG          D  A           +    +  S+  +  
Sbjct: 71  ASLDALEEAA-----PIAFGPNRPVSEPVADLLAYNAPSGGLMMIVDRNLRQVSAFGEVD 125

Query: 222 YDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLN 281
              F+           + V+ +           +           ++ P       +   
Sbjct: 126 APYFALDRLEALPPQGDVVTLIDGNGGRWAATARALTPD--QVLVAAQPVPLIPFALWAP 183

Query: 282 QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNL 341
             +       L      +   ++ R   + +    E  +L    +        ++   N 
Sbjct: 184 YLSVGVGIAGL----CWALMAMAIRTRHTEAISEGERRHLLSRILGPERAGIGIWRRENT 239

Query: 342 FYANPSFLLL-TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400
               P+       +   +       L   +        +                    L
Sbjct: 240 GVVLPAATRAALGFTRQNVTMPTDDLEGFIHQADTPVAHRFFFA------DDIGGGDLVL 293

Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
                    +  +     +           +    +         +   EV +L   +EA
Sbjct: 294 RCRTVEGTYARVLFRTTSDAEGMGIAVPLGDSGLADP--------QASQEVDRLRETVEA 345

Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPV------------EDILRKPFTVFLEQNTPSV 508
                 + ++   +L+ N     LFG                 +        L   TP  
Sbjct: 346 LPQAFLLWDQNERLLAWNAPFLSLFGIDRGAVAEGIDAGALMALASADLCPLLAHFTPPT 405

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR--IIIKKLPFSSC----------YSL 556
            +     + ++   +   ++    T     + +   +   K+                 +
Sbjct: 406 DDD--QAVEAVFPNEQFVRVVRTKTVGGGWVCVAHDVSDAKIEAEQRARNERELQHTVEV 463

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
              +  + ++   +    K  A++ +  KS+FLA +SHE+RTPL AI GFSE++K + FG
Sbjct: 464 LKRNREDLREAVRRYETEKLNAQEANRAKSEFLANMSHELRTPLNAINGFSELMKEELFG 523

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
           PLG+ +Y+EY   I  SG+ +L++++D+LD+SK+E+GK++L    V LD  + E++ LV+
Sbjct: 524 PLGHKKYVEYIKDIHASGSHLLNLIDDILDLSKLEAGKLDLDLCQVDLDRLLKESLRLVE 583

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
           +   E  +  R S  ++IP + AD R+VKQ+ LN+LSNA  FTP GG + ++T       
Sbjct: 584 MQMREASLEFR-SLTDHIPSVWADPRAVKQVILNVLSNAQKFTPQGGAVTVTTLVDLTTV 642

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
            IL + DTG+GMT  +LEK  +PF    +       GTGLGL L+K++++A  G   + S
Sbjct: 643 TIL-IADTGIGMTPEQLEKLGQPFELADDHFSRASRGTGLGLALSKSLMEAQNGLLAVTS 701

Query: 797 TPAKGTLIEIIFP 809
            P +GT+  I  P
Sbjct: 702 EPRRGTVAAICLP 714


>gi|117924790|ref|YP_865407.1| multi-sensor signal transduction histidine kinase [Magnetococcus
           sp. MC-1]
 gi|117608546|gb|ABK44001.1| PAS/PAC sensor signal transduction histidine kinase [Magnetococcus
           sp. MC-1]
          Length = 624

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 83/419 (19%), Positives = 171/419 (40%), Gaps = 26/419 (6%)

Query: 392 TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV 451
           +       +  +      +L+ +  P E        +         ++ R N   +  E 
Sbjct: 195 STRRFRKLMAQVHAISSEALSSSVAPVEMQPGDELGLLGASFRSMAMELRRNVSSVTRER 254

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
             L  +L+  +DG+ +++    ++ +N     L G   E+ + +     L     S    
Sbjct: 255 RLLQGVLQGMADGLLVVDDHSRVVLSNPPAETLLGV-GEEHVGETLQSVLS----SQCYQ 309

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571
            L+++L ++           +  +E    ++     +     Y +  HD +  ++++   
Sbjct: 310 QLSQVLQVENNLPGSVELTLTFGDESRF-VQAQWTPMEGERGYIIVFHDNTILRRQE--- 365

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY-IEYANYI 630
                        + DF+A VSHE+RTP++ +   +E + N   G L +  Y ++  N I
Sbjct: 366 -----------QIRRDFVANVSHELRTPISILQANAETLLN---GALNDKAYGVQLVNAI 411

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
           +R    +  I++ LLD++++ES ++    EP+++   V+     +   A EK I   +  
Sbjct: 412 ERHAIRLSQIISKLLDLARLESNELIFKNEPLNISSIVNSVQEHITPLAQEKNITCWSMI 471

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
              +   + D  +V+++  N++SNA+ + P+G QI I+ +        + V DTG G+  
Sbjct: 472 KPEV-VCMGDREAVEEVLSNLVSNAVKYIPAGEQISITCS-ELQGFNRIEVSDTGAGIDA 529

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
               +  + F ++   +     GTGLGL + K MV    G   + S    G       P
Sbjct: 530 SHHSRVFERFYRVDKGRSRDMGGTGLGLSIVKQMVRKMGGDVGVESVNPHGCRFWFTLP 588


>gi|325262477|ref|ZP_08129214.1| sensory box sensor histidine kinase/response regulator [Clostridium
           sp. D5]
 gi|324032309|gb|EGB93587.1| sensory box sensor histidine kinase/response regulator [Clostridium
           sp. D5]
          Length = 1209

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 125/748 (16%), Positives = 256/748 (34%), Gaps = 52/748 (6%)

Query: 95  LKEISEELPKTIGNYAF----KMIGMRLCDVSDILHI-DPNNHIGDLLKRQNTWYGKTTL 149
              I+  +   +G        + I   + +          +  +   L+ ++ +  +  +
Sbjct: 170 FYFINRRMLDYLGYENEAEFVEDIEGLITNCMHPDDRKRVDEEVERQLQCKDEYVVEYRM 229

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
              +G  LY+ +      +   N          I  +         +    +     +  
Sbjct: 230 KRKDG--LYIWVHDMGRRMADENGR-PAITSVCI-DITTQKKAQNEVLHIYNNVPGAVFR 285

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
            +        +  D F +         +   + L+     +D  +  +K     ++ +++
Sbjct: 286 CRFDEYFSIIDANDGFFEFLDYTREEFETMGNRLSSVIYPEDLTVMKKKLETQQADGNTV 345

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKES----FEYLSHRNHPSLSAYFDEGENLTPET 325
             +      N            L   ++E                 S   D  E      
Sbjct: 346 NNENRLICKNGEVKWISLKAQLLMEENREQYFYCVFVDITEEKLLESRMRDLYEKELEYF 405

Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
            +            N+   N     LT  +S      A    ++++    +   A +  +
Sbjct: 406 AELSSSGGSTQGRFNITR-NQLENYLTDPESAISHVGATYQESIINLAASAVEAADREQI 464

Query: 386 LYRSDRTCIAASARLHTI--------QWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
           L   DR  +        +        + + ++            N    ++       + 
Sbjct: 465 LSVLDREKVLEDYAAGNVDYCFEYLRRRSDKSLFWARTNFRSFLNPETGDVIVFFYTFDI 524

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTN--------RAVSKLFGYP 488
            + ++ ++ +        + L+   + I  I+ R       N          + K FG  
Sbjct: 525 TEQKLKEQLINK-----IAALDY--EAITEIDIRNDKFRGINFESGGRGPDWLEKNFGEA 577

Query: 489 VEDILRKPFTVFLEQNTPSVMN-HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
           + +I  +       Q     ++  Y+ E+L      T          + ++   ++    
Sbjct: 578 IREIAERSMDTPAAQEYLRRLDYGYMQELLEHQEAYTFSLEMHDECGDVRMKRFQVFYI- 636

Query: 548 LPFSSCYSLTMHDISEWKQEKNK----LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
                   L   D+++  +++ +    L+ A   AE+ ++ KSDFL+R+SHEIRTP+ AI
Sbjct: 637 NKELGRVCLARTDVTDVVRKEQQQKEELAAALVAAEQANAAKSDFLSRMSHEIRTPMNAI 696

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           IG S +          + +  +  + I  S   +L ++ND+LD+S+IESGKM L  E + 
Sbjct: 697 IGMSAIAAQSIG---DDEQVQDCISKIGISSRFLLSLINDILDMSRIESGKMLLKNEKIP 753

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSG 722
            +E ++   S+    A  + +         +      D   ++Q+ +NILSNAI FT  G
Sbjct: 754 TEEFINGINSICYAQAASRNVEYECIVDPVLDDFYIGDAMKLQQVLINILSNAIKFTSEG 813

Query: 723 GQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
           G++  S       +    +   V DTGVGM+   +    +PF Q          GTGLGL
Sbjct: 814 GRVTFSVEQRQRTKNDVLMRFIVNDTGVGMSEEFIPHIFEPFSQESTGTTALYGGTGLGL 873

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEI 806
            ++K +VD   G+  + S    GT   +
Sbjct: 874 AISKNIVDMMDGRITVRSIKGIGTEFMV 901



 Score = 38.5 bits (88), Expect = 5.5,   Method: Composition-based stats.
 Identities = 38/384 (9%), Positives = 97/384 (25%), Gaps = 30/384 (7%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKM--IGMRLCDVSDILHIDP-NNHIGDLLKRQN 141
           F    D +  + + ++   + +     +   +G RL  V     +      +       N
Sbjct: 284 FRCRFDEYFSIIDANDGFFEFLDYTREEFETMGNRLSSVIYPEDLTVMKKKLETQQADGN 343

Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVH-----VNRVDNDPRAL 196
           T   +  L    G      I L A  +   NRE   +  F  +       +R+ +     
Sbjct: 344 TVNNENRLICKNGE--VKWISLKAQLLMEENREQYFYCVFVDITEEKLLESRMRDLYEKE 401

Query: 197 GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDV 253
            +   +  S     +   +    +  +  +             +  + +L        D 
Sbjct: 402 LEYFAELSSSGGSTQGRFNITRNQLENYLTDPESAISHVGATYQESIINLAASAVEAADR 461

Query: 254 LKTEKY-------PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
            +               +       +      + + +  +  F +  N          + 
Sbjct: 462 EQILSVLDREKVLEDYAAGNVDYCFEYLRRRSDKSLFWARTNFRSFLNPETGDVIVFFYT 521

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
              +     ++  N     +D   I      +      N      +  +  D +E   G 
Sbjct: 522 FDITEQKLKEQLINKIAA-LDYEAITEIDIRNDKFRGINFE----SGGRGPDWLEKNFGE 576

Query: 367 STLLDAPKLSDNNAIKPVMLYR----SDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
           +    A +  D  A +  +                A   +++ + E    +    F+   
Sbjct: 577 AIREIAERSMDTPAAQEYLRRLDYGYMQELLEHQEAYTFSLEMHDE-CGDVRMKRFQVFY 635

Query: 423 QFPENMPQNGIEPEDVDTRINKRK 446
              E         +  D    +++
Sbjct: 636 INKELGRVCLARTDVTDVVRKEQQ 659


>gi|293394393|ref|ZP_06638692.1| virulence sensor histidine kinase BvgS [Serratia odorifera DSM
           4582]
 gi|291423082|gb|EFE96312.1| virulence sensor histidine kinase BvgS [Serratia odorifera DSM
           4582]
          Length = 1209

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 123/763 (16%), Positives = 258/763 (33%), Gaps = 58/763 (7%)

Query: 65  TNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI 124
           ++YL+ + ++         R     D H  L  I+  L                 D    
Sbjct: 225 SSYLEIQTSYPE--RDTGSRLLLRKDQHMLLDSINRVLAVI-------------PDSQHQ 269

Query: 125 LHIDPNNHIGDL--LKRQNTWYGKTTLWPIEGTNLYVPIDLAALP--IYSRNREFSGFRG 180
           + +       DL  ++++  +  +   W      + V ++    P  +   +  F G   
Sbjct: 270 VILQQWGERADLWRVRKEIAFSAQEQKWLAANPTIKVSVNEFYAPFTMIDADGNFYGVTA 329

Query: 181 FGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV 240
             ++ +  + +             + + ++  G ++          +       R     
Sbjct: 330 -DVLRLIELRSGLNFQLMSAGAVDAMMEQVADGEAAFVGALSASGERSQKLLFSRPYFSS 388

Query: 241 SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF 300
             +    A ++        PL+  E  +L +  +                 LQ       
Sbjct: 389 PFVLVVKAGREQGR-----PLVAGERVALVKGNELRR-------------DLQARYPGIE 430

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDI 360
              +   + ++    +   + T  T+         Y    L  A          K V  I
Sbjct: 431 IVDAPNANLAMQWVDEGKVDATVNTLFGSSYMIGHYFKDRLKVAER------VGKDVAAI 484

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
             A G         L+ +          +  +       +    W    +          
Sbjct: 485 RFAVGRDRPELLSILNKSLESISPNNMSAILSKWQTRPDVQLNTWQLYRTQFWLLAGGGG 544

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
           A      +    +  E       ++ ++ ++M   ++L +    + +++R G ++ +N A
Sbjct: 545 ALVLTSLLWIFYLRREVAARHKAQQGLQSQLMFNETLLNSVPIPLYVVDRHGELVMSNPA 604

Query: 481 VSKLFGYPVED---ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
               F     +      +     L Q   +     L +        T         ++  
Sbjct: 605 WRNFFHGEARETGLCGPQHVASPLHQVWQTAAERLLDQHNPH-HSHTDTVDIFDGERQRT 663

Query: 538 LLSLRIIIKKLP-FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
           ++   +   +             DI+E +     L  A++ AE+ +  KS FLA +SHEI
Sbjct: 664 VVHYAVTYARSDAHVDGLICAWMDITEHQALAKALHDARENAEQANRAKSTFLATMSHEI 723

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTP++AIIG  E+               +       S   ++ ++ D+LD+++IESG++ 
Sbjct: 724 RTPVSAIIGLLELAVKTSDQARDRE---DPVRVAWESARSLMGVIGDILDMARIESGRLE 780

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNA 715
           L  E +   E +   + + +  A +K + +R+S    +P  I  D   ++Q+  N++SNA
Sbjct: 781 LSPEWLRTTELLPPVVRVFEGLARQKGLRLRSSLPTQLPYEIFVDPLRIRQVISNLVSNA 840

Query: 716 IHFTPSGGQ-IIISTTHTSNEEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           + FT  GG  I +      +      + V+D+G G++  E +    P+ Q  N       
Sbjct: 841 VKFTEQGGIDIDLDLAALPDGRAQLNISVQDSGRGISEAEQQDIFDPWVQAKNG--SVTG 898

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
           G+GLGL +   +V+   G+  + S PA+GT +    P+     
Sbjct: 899 GSGLGLAICAQLVNMMGGEIAMSSRPAQGTRVSFSIPVDQHHE 941


>gi|317486464|ref|ZP_07945289.1| hsp90-like protein [Bilophila wadsworthia 3_1_6]
 gi|316922267|gb|EFV43528.1| hsp90-like protein [Bilophila wadsworthia 3_1_6]
          Length = 907

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 116/622 (18%), Positives = 218/622 (35%), Gaps = 40/622 (6%)

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
           + ++      +  E             +  K + + + +  A    V +  ++       
Sbjct: 16  VVDMADVPMVLTDEDGRFVFANGHTLDIVGKAEDACIGKPLASLLSVSRRPRFNRSGKAP 75

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
                +  F+ ++    ++      +   S+      ++R+   L               
Sbjct: 76  VLFTREGRFYEVDG--ISRFHTKSGMLELSRIHDVTSTYRDKEMLEFLKS---------- 123

Query: 327 DKCPIPFFVYSHGN---LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
              PI  F +        FY +  F  +  Y   D ++ A  +                 
Sbjct: 124 -NAPIGIFQFVMDEHFSFFYVSEGFCAMHGYT-QDQMKTAPDIRGSELIHPDHLQRFNDL 181

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
           +     D    +    +  I+ + +    +T   F    +  +     G   +  D +  
Sbjct: 182 IRTAYEDGKS-SVGFEMKVIRRDGKVRWLLTQCSFV---KTADGTIVYGYVSDCTDLKNM 237

Query: 444 KRKMEIEVMQLCSILEATSDGIAIIN-REGIILST----NRAVSKLFGYPVEDILRKPFT 498
           + K +         +    + I +++             N  +         +++R    
Sbjct: 238 EEKTKNVQDVCRFTVNHDYEWILLVDIPADRYEYFFSGRNSMIGSGMQGVFSELVRLRSE 297

Query: 499 VFLEQNTPSVMNHYL--TEILSLDLRQTLEKITLGST--KEEKLLSLRIIIKKLPFSSCY 554
             +  +       +     +   +    L             +     +           
Sbjct: 298 TVVHPDDVEAYRAFFKPERLAWENGTPGLSHELKYRVLMGNGQARWHCLRAYLFDPVRRM 357

Query: 555 SLT-MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
            L    D+ E +++K  L  A   AE+ +  KS+FL+R+SH+IRTP+ AIIG + +    
Sbjct: 358 LLFCAKDVEEEERQKATLRMALVAAEQANHAKSEFLSRMSHDIRTPMNAIIGMAAIAGMN 417

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
              P    R  E  N I  S   +L ++ND+LD++KIESGKM+L  EP   DE VS   S
Sbjct: 418 VGNP---ERLSECLNNIALSSRFLLSLINDVLDVAKIESGKMSLASEPFDFDELVSSVSS 474

Query: 674 LVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIST--- 729
                A  K I+     +  + +I   D   +KQ+ +N+LSNA+ F P  G+I  +    
Sbjct: 475 FTYGSAVAKGIIFNLFASPLLEKIYVGDPLRIKQVLMNLLSNALKFAPEKGRIEFNITPV 534

Query: 730 -THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                 E V   + D G+GM+    E+  +PF Q   + Q    G+GLGL + ++ V   
Sbjct: 535 QKVGHRELVRFVISDNGIGMSKSFQERMFQPFEQ-EMTDQRGLSGSGLGLAIVRSFVQLM 593

Query: 789 MGKFYIFSTPAKGTLIEIIFPL 810
            G   + S   KG+   +  PL
Sbjct: 594 DGTIRVESEQGKGSSFSVDIPL 615



 Score = 45.8 bits (107), Expect = 0.027,   Method: Composition-based stats.
 Identities = 17/127 (13%), Positives = 37/127 (29%), Gaps = 16/127 (12%)

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
           L  +++     + + + +G  +  N     + G   +  + KP    L  +     N   
Sbjct: 13  LKFVVDMADVPMVLTDEDGRFVFANGHTLDIVGKAEDACIGKPLASLLSVSRRPRFN--- 69

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT--MHDISEWKQEKNKL 571
               S        +       +         I +    S       +HD++   ++K  L
Sbjct: 70  ---RSGKAPVLFTREGRFYEVDG--------ISRFHTKSGMLELSRIHDVTSTYRDKEML 118

Query: 572 SHAKKIA 578
              K  A
Sbjct: 119 EFLKSNA 125


>gi|223937695|ref|ZP_03629597.1| multi-sensor signal transduction histidine kinase [bacterium
           Ellin514]
 gi|223893667|gb|EEF60126.1| multi-sensor signal transduction histidine kinase [bacterium
           Ellin514]
          Length = 982

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 92/410 (22%), Positives = 171/410 (41%), Gaps = 18/410 (4%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
            E+ +          +  E      ++R +     +  ++  ATS G+ + +   II   
Sbjct: 579 AEEIDFSASVATMISLAIEAAQRARSERSLRESEEKHRALFRATSQGVLLHDEN-IIFEV 637

Query: 478 NRAVSKLFGY-PVEDILRKPFTVFLEQ------NTPSVMNHYLTEILSLDLRQTLEKITL 530
           N A  ++ G    ED+L K                 S+   ++   L     +      L
Sbjct: 638 NSAAMRMLGRGNEEDLLGKSPWDISAPIQANGEPAESLARKHIRTALEKGSAR---FEWL 694

Query: 531 GSTKEEKLLS--LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
               E K     + +    L   +     ++DI+E KQ + +L  A    ++    KS F
Sbjct: 695 ARRPEGKDFPAEIFLTPIPLHGRTVIQAVINDITERKQAETELLKALAREKELGVLKSSF 754

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
           ++ VSHE RTPL  I+  +E I +     L      E+   I ++   +  ++ ++L   
Sbjct: 755 VSLVSHEFRTPLGIIMSSAE-ILHSYLDQLETIHRQEHLESIAKNAKRMAGMMEEVLLFG 813

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIA 708
           ++E+GKM LH  P+SL          + L A + +  I  +       I AD R ++ I 
Sbjct: 814 QVEAGKMELHPAPLSLSSFCRRLKDEI-LSATDGQCPIVLTMEAFPTDIFADERVLRHIF 872

Query: 709 LNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
            N+L NA+ ++ +G  +         ++ + +VRD G+G+   + +   K F +   S  
Sbjct: 873 TNLLLNAVKYSRAGSPVHFMVA-QEGKDAVFQVRDQGIGIPEADQQWLFKAFHR--GSNA 929

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
               GTGLGL + K  V+ + G+  + S   +GT I +  PL++ ++  +
Sbjct: 930 ANLPGTGLGLVIVKRSVELHNGRIKVESVVDQGTAITVRLPLFNEANEKN 979



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 23/182 (12%), Positives = 63/182 (34%), Gaps = 6/182 (3%)

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
             +      ++  R   L               +   N +  E  + R  +  +     Q
Sbjct: 72  RPSRKVTQPVREARIQQLNQELEGRVNERTSALSNANNQLTNEITEHRKTEALLRQSEEQ 131

Query: 454 LCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRK---PFTVFLEQNTPSVM 509
              +++   + I +++   G+ ++ N    +LFGYP E +++    P    ++ +     
Sbjct: 132 ARILVDNAPEAIVVLDFDNGLFVAVNENACRLFGYPREALMKLGLAPLCPIVQADGRFSD 191

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQE 567
                +I +    +T     +       L+   + + +LP         ++ D +E +++
Sbjct: 192 EAAREKIAAALAGETPVFEWIHKNSVGNLIPCEVRLVRLPAEGRNLVRGSVTDNTERRRK 251

Query: 568 KN 569
           + 
Sbjct: 252 ER 253



 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 55/450 (12%), Positives = 126/450 (28%), Gaps = 53/450 (11%)

Query: 233 HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL 292
            ++M + VS L          +         S + + P +E        +   +    T 
Sbjct: 43  AIQMNDPVSWLLPAACGVIGAIIGALAMKRPSRKVTQPVREARIQQLNQELEGRVNERTS 102

Query: 293 QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV--YSHGNLFYANPSFLL 350
             ++  +        H    A   + E      VD  P    V  + +G     N +   
Sbjct: 103 ALSNANNQLTNEITEHRKTEALLRQSEEQARILVDNAPEAIVVLDFDNGLFVAVNENACR 162

Query: 351 LTKYKSVDDI-EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
           L  Y     +      L  ++ A     + A +  +                        
Sbjct: 163 LFGYPREALMKLGLAPLCPIVQADGRFSDEAAREKIAAALAGETPVFEWI-----HKNSV 217

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469
              +                  G   ++ + R  +R ++  + Q+   +   +D    ++
Sbjct: 218 GNLIPCEVRLVRLPAEGRNLVRGSVTDNTERRRKER-IQKAIYQISESIHTAND----LD 272

Query: 470 ---------------REGIILSTNRAVSKL--FGYPVEDILRKPFTVFLEQNTPSVMNHY 512
                           +   LS + A + +  F Y V+++ ++P    L+    + +   
Sbjct: 273 SLYRQIHGTIKELMPADNFFLSLHDAATDMHHFVYHVDEVDKRPPPRKLKYGMSAYVLQT 332

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572
              +L+      L++   GS     +      ++    S+ +      +   K     + 
Sbjct: 333 GKPLLADRNA-MLQRQIKGSPPPGPIEPGNWYVESGTPSAIWLGVPL-VVRGKALGVMVV 390

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
                 +     +   LA V+                   ++       +  E A  I  
Sbjct: 391 QDYHDEKAYGEEEKRILAFVA-------------------EQTALAIERKQAEQALRIR- 430

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
               VL   N LL+++K++  +  L  E +
Sbjct: 431 -SEQVLRHRNMLLELAKLDKSEFELALEKI 459


>gi|170698659|ref|ZP_02889726.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria
           IOP40-10]
 gi|170136438|gb|EDT04699.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria
           IOP40-10]
          Length = 663

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 92/414 (22%), Positives = 159/414 (38%), Gaps = 21/414 (5%)

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ--LCSILEATSDGIAI 467
            L M   P    ++                       +   V    L  +++A+ D I  
Sbjct: 100 VLVMAVKPLLANDRLRGAEDAEEDSARSPRREPEPGTLARSVDDTVLRRVVDASPDAIVG 159

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
           ++    I S N A  +LFG      +    T+ +      +     +   +      L+ 
Sbjct: 160 VDAARRITSWNPAARRLFGIDAAAAIGHDVTMLIAPRWLRLHPVPASFANAGAPAGPLD- 218

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD-----------ISEWKQEKNKLSHAKK 576
             L   ++            +  +      +                  +       A+ 
Sbjct: 219 -VLCLRRDGSRFRATFTASPIVDAQGNCTGLSMTLREARERRRCEQRDLRTLRGARDARV 277

Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
            A++ +  K + LA VSHE+RTPL  I G+ EV+++       +    +  + IDRS   
Sbjct: 278 QADESNRMKDELLATVSHELRTPLNVIYGWVEVLRSGEGQGFAH----QAIDAIDRSARS 333

Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696
           +  +V DLLD S + +G+M L   PV L   V EA+  +   A    + + T  A     
Sbjct: 334 LSRMVGDLLDASSLATGRMRLERTPVDLVRIVQEAVRELGETAEANGLELSTECAMPSCV 393

Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKA 756
           I AD   ++Q+  N+LSNA+ FTP GG+I +S    +   V L V DTG G++   L   
Sbjct: 394 IAADADRLRQLLANLLSNAVKFTPPGGRIKVSLNP-AGARVRLSVADTGQGISAERLPHL 452

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFP 809
              F +   +  +   G GLGL + + +   + G+    S    +GT + ++ P
Sbjct: 453 FDTFSRPEGAPALPKRGLGLGLSIVRNIARLHGGEVAAASEGAGRGTTVTVMLP 506



 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 57/561 (10%), Positives = 117/561 (20%), Gaps = 112/561 (19%)

Query: 41  KENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISE 100
            E     S  +         SV +T                       +DA   +   + 
Sbjct: 120 AEEDSARSPRREPEPGTLARSVDDTV-------LRRVVDASPDAIV-GVDAARRITSWNP 171

Query: 101 ELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL-WPIEGTNLYV 159
              +  G  A   IG  +  +     +  +                  L    +G+    
Sbjct: 172 AARRLFGIDAAAAIGHDVTMLIAPRWLRLHPVPASFANAGAPAGPLDVLCLRRDGSRFRA 231

Query: 160 PIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEK 219
               +  PI       +G                  L   L +        ++   ++  
Sbjct: 232 TFTAS--PIVDAQGNCTG------------------LSMTLREARERRRCEQRDLRTLRG 271

Query: 220 EKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTIN 279
            +             RMK+++ +   +       +      +L S E      +    I+
Sbjct: 272 ARDARVQADES---NRMKDELLATVSHELRTPLNVIYGWVEVLRSGEGQGFAHQAIDAID 328

Query: 280 LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY-FDEGENLTPETVDK---------- 328
            +  +  +  G L + S  +   +     P        E      ET +           
Sbjct: 329 RSARSLSRMVGDLLDASSLATGRMRLERTPVDLVRIVQEAVRELGETAEANGLELSTECA 388

Query: 329 CPIPFFVYSHGNL----------------------FYANPSFLLL-TKYKSVDDIEIAGG 365
            P          L                         NP+   +            A  
Sbjct: 389 MPSCVIAADADRLRQLLANLLSNAVKFTPPGGRIKVSLNPAGARVRLSVADTGQGISAER 448

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW--------NRENSLAMTFIP 417
           L  L D     +     P        + +   ARLH  +                M    
Sbjct: 449 LPHLFDTFSRPEGAPALPKRGLGLGLSIVRNIARLHGGEVAAASEGAGRGTTVTVMLPAD 508

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
               +     +  +G                                + +++ +    ++
Sbjct: 509 LGADDPTGHPVRPSGASTAVALDGRR---------------------VLVVDDDATSRAS 547

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
             A  +  G  V              +T    +  L  +        L      +  +  
Sbjct: 548 LAAALETLGAEV--------------STAQSGHDALDVVAQQHPSVVLSD---LAMPDGD 590

Query: 538 LLSLRIIIKKLPFSSCYSLTM 558
              L   I+ LP        +
Sbjct: 591 GFWLLDHIRDLPDGGGRLPVV 611


>gi|254506687|ref|ZP_05118827.1| phosphate regulon sensor kinase PhoR [Vibrio parahaemolyticus 16]
 gi|219550268|gb|EED27253.1| phosphate regulon sensor kinase PhoR [Vibrio parahaemolyticus 16]
          Length = 432

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 80/421 (19%), Positives = 159/421 (37%), Gaps = 36/421 (8%)

Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
                +    RL    W+ +            +         NGI       R  ++++ 
Sbjct: 42  QLGWHLHNQMRLSAWLWDEKR-------LTPPSGSGNWESLFNGIYRLQQRQRKKRKELT 94

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
             + +  +  E+  D + +   EG I+  N+    L G+   D   +P +  +       
Sbjct: 95  NLIRRFRNGAESLPDAVVVFRSEGNIVWCNKLAQHLLGFKWPDDTGQPISNLIRTPDFIK 154

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568
             +       L++R  L    +          L + I        + + + D+++ KQ +
Sbjct: 155 YLNKQNFAEPLEMRSPLNVERM----------LELRIVPYTEGE-HLMVVRDVTQLKQLE 203

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
                           + +F A VSHE+RTP+T + G+ E+   +    +  P + +   
Sbjct: 204 G--------------MRRNFFANVSHELRTPMTVLQGYLEM--TEDPDMVVGPMWPKAHG 247

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            +    N +  +VN LL +SKIE+  M+   E V++   +          + E+   +R 
Sbjct: 248 VMTEQLNRMNSLVNQLLTLSKIEAAPMHELDEVVNVPAMLDVLEKEAASLSGEQGHQLRF 307

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748
                + R+ AD   ++    N++ NA+ +TP+G ++ +    T      L V D G G+
Sbjct: 308 EVDTGL-RVFADEDQLRSAISNLVYNAVKYTPAGAEVYVRWYQTPQG-AHLEVEDKGDGI 365

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
               L +  + F ++  ++     G+GLGL + K  +  +     I S    G+    I 
Sbjct: 366 EPQHLHRLTERFYRVDKARSRDTGGSGLGLAIVKHALTHHDSHLEIQSEVGVGSKFSFIL 425

Query: 809 P 809
           P
Sbjct: 426 P 426


>gi|145300355|ref|YP_001143196.1| hybrid sensory histidine kinase BarA [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142853127|gb|ABO91448.1| two-component system hybrid sensor histidine kinase/response
           regulator [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 903

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 95/356 (26%), Positives = 161/356 (45%), Gaps = 24/356 (6%)

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
           A S LFG+ +   + +P T  +       ++      L   +   L             +
Sbjct: 187 AFSTLFGFRLVKSVIQPITDMV-----QAVHKIREGRLDTRVSGQLTGELDMLKNGINAM 241

Query: 540 SLRIIIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHE 595
           +  +                D+ E  ++      +L  AKK A++ +  KS+FLA +SHE
Sbjct: 242 AKALSEYHEEMQQNIDQATSDLRETLEQIEIQNVELDMAKKRAQEAARVKSEFLANMSHE 301

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           +RTPL  +IGF+  +      P       +Y   I++S   +L I+ND+LD SK+E+GK+
Sbjct: 302 LRTPLNGVIGFTRQLLKTALTP----SQTDYMQTIEKSARNLLGIINDILDFSKLEAGKL 357

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSN 714
            L   P SL + ++E + L+   A++K++ +       +P  +  D   ++Q+  N+  N
Sbjct: 358 QLEHIPFSLRDTLNETMHLLGPSAHDKQLELSLQVDAEVPDYLTGDPMRLQQVLTNLAGN 417

Query: 715 AIHFTPSGGQ-IIIS-TTHTSNEEVILRV--RDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           AI FT  G   + I  T  ++  +V L V  RDTG+G++  +  +  + F Q  +S   R
Sbjct: 418 AIKFTERGNVDVHIEQTGGSNGNKVRLNVLIRDTGIGISEEQQRQLFQAFNQADSSISRR 477

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF-----PLYDTSH-PHDCI 820
             GTGLGL + + +V    G+    S   KG++          PL  T   P D I
Sbjct: 478 YGGTGLGLVITQKLVQQMGGQIRFESELGKGSIFSFSLDMDVSPLPQTEKLPLDRI 533


>gi|288936892|ref|YP_003440951.1| PAS/PAC sensor signal transduction histidine kinase [Klebsiella
           variicola At-22]
 gi|288891601|gb|ADC59919.1| PAS/PAC sensor signal transduction histidine kinase [Klebsiella
           variicola At-22]
          Length = 431

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 74/427 (17%), Positives = 156/427 (36%), Gaps = 37/427 (8%)

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             +L       I     L  + W     L +         +        G+    +  + 
Sbjct: 33  WFLLAAVTGLLIWHFWNLMRLSW----WLWVDRSMTPPPGRGSWEPLLYGLHQMQMRNKK 88

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            +R++   + +  S  E+  D + +   EG I   N    ++      D   +     L 
Sbjct: 89  RRRELGSLIKRFRSGAESLPDAVVLTTEEGAIFWCNGLAQQILNLRWPDDSGQNILNLLR 148

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
                    +   +   D  + L  +   +        L I +        + +   D++
Sbjct: 149 YP------EFANYLKQRDFSKPLNLVLNNARH------LEIRVMPYTDKQ-WLMVARDVT 195

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  Q +                + +F A VSHE+RTPLT + G+ E+++ Q        +
Sbjct: 196 QMHQLEG--------------ARRNFFANVSHELRTPLTVLQGYLEMMQEQVLEGATREK 241

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                + +      +  +V  LL +S+IE+       + + +   +       Q  + EK
Sbjct: 242 A---LHTMREQTQRMEGLVKQLLTLSRIEAAPALAMNDRIDVPMMLRVVEREAQTLSQEK 298

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           +  +  +    + ++L +   ++    N++ NA++ TP G +I +S   T    +   V 
Sbjct: 299 Q-TLIFTVDEQL-KVLGNEEQLRSAISNLVYNAVNHTPPGTEIRVSWQRTPQGAL-FSVE 355

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G G+    + +  + F ++  ++  +  G+GLGL + K  V+ +  +  I ST  KGT
Sbjct: 356 DNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHAVNHHDSRLEIDSTVGKGT 415

Query: 803 LIEIIFP 809
               + P
Sbjct: 416 RFSFLLP 422


>gi|295688200|ref|YP_003591893.1| PAS/PAC sensor hybrid histidine kinase [Caulobacter segnis ATCC
           21756]
 gi|295430103|gb|ADG09275.1| PAS/PAC sensor hybrid histidine kinase [Caulobacter segnis ATCC
           21756]
          Length = 638

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 105/481 (21%), Positives = 180/481 (37%), Gaps = 26/481 (5%)

Query: 333 FFVYSHGN-LFYANPSFLLLTKYKSVDDI-EIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390
            FV  HG  +   NP++   T +   D +         L D P + D   I       + 
Sbjct: 28  MFVVLHGRTIARVNPAWTQSTGWSPEDSLGRHLHDFFHLHDTPIIQDIGRILEARGQATG 87

Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450
                        +  R+    +      K  +  + +       E+    I +++ E  
Sbjct: 88  EH-----------RLARKGGGWLWVRSQSKVLEGGDLLIVLQDRTEERARNIARQQAERS 136

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV-FLEQNTPSVM 509
              L +   AT   +   N    I   ++    +      +   +  TV  + Q+     
Sbjct: 137 NELLRT---ATGIFVWRFNPRKGIYVFDQ---DIPTPSQPEGGARTMTVSEMTQSIHPED 190

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN 569
                E LS  LR            +        I          S    D+    Q   
Sbjct: 191 RDRAWEALSHTLRTGEHVEIDYRYLDPPTGLWAHIHSAWRGVRGASPAAWDVIGISQNVT 250

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  A+  A   +  KS FLA +SHEIRTP+  ++G   ++K +R    G        N 
Sbjct: 251 ELVEARDAALAAADAKSQFLANMSHEIRTPMNGVLGVLHLLKKERLSADG----RRLLNE 306

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
               G ++  ++ND++D+S+IE+GK++L  EP    E +     +++  A  K + +R  
Sbjct: 307 ALDCGEMLSQLLNDIIDVSRIEAGKLDLAAEPTEPAELLRGVAEMLRPQAEAKGLSLRVE 366

Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR--VRDTGVG 747
            A ++   + D   ++Q   N+L NA+ FT +GG +   T     + + LR  + DTGVG
Sbjct: 367 TAGDLGWAITDPLRLRQALFNLLGNAVKFTLAGGVVARLTGRREGDRLRLRYEIADTGVG 426

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           +      K  + F Q   S   R  G+GLGL + + + +   G     S   KG+   I 
Sbjct: 427 IAPEAAAKLFERFRQGDGSTTRRFGGSGLGLAICRRLAELMGGDVGFESVLGKGSTFWIE 486

Query: 808 F 808
            
Sbjct: 487 I 487



 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 41/404 (10%), Positives = 101/404 (25%), Gaps = 41/404 (10%)

Query: 92  HGY-LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150
           HG  +  ++    ++ G      +G  L D   +        IG +L+ +    G+  L 
Sbjct: 33  HGRTIARVNPAWTQSTGWSPEDSLGRHLHDFFHLHDTPIIQDIGRILEARGQATGEHRLA 92

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
              G   ++ +        S+++   G     ++     +       ++ ++    L   
Sbjct: 93  RKGGG--WLWV-------RSQSKVLEGGDLLIVLQDRTEERARNIARQQAERSNELLRTA 143

Query: 211 KKGHSSVEKE-------KYDIFSQQSPPPHLRM--------------KNKVSSLTEYYAH 249
                              DI +   P    R               +++      +   
Sbjct: 144 TGIFVWRFNPRKGIYVFDQDIPTPSQPEGGARTMTVSEMTQSIHPEDRDRAWEALSHTLR 203

Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
             + ++ +   L             +  +           G  QN ++      +     
Sbjct: 204 TGEHVEIDYRYLDPPTGLWAHIHSAWRGVRGASPAAWDVIGISQNVTELVEARDAALAAA 263

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFV------YSHGNLFYANPSFLLLTKYKSVDDIEIA 363
              + F    +    T     +           S       N +            +   
Sbjct: 264 DAKSQFLANMSHEIRTPMNGVLGVLHLLKKERLSADGRRLLNEALDCGEMLS--QLLNDI 321

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYR--SDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
             +S +            +P  L R  ++     A A+  +++      L        + 
Sbjct: 322 IDVSRIEAGKLDLAAEPTEPAELLRGVAEMLRPQAEAKGLSLRVETAGDLGWAITDPLRL 381

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465
            Q   N+  N ++       + +     E  +L    E    G+
Sbjct: 382 RQALFNLLGNAVKFTLAGGVVARLTGRREGDRLRLRYEIADTGV 425


>gi|229173301|ref|ZP_04300845.1| hypothetical protein bcere0006_24020 [Bacillus cereus MM3]
 gi|228609995|gb|EEK67273.1| hypothetical protein bcere0006_24020 [Bacillus cereus MM3]
          Length = 587

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 89/506 (17%), Positives = 177/506 (34%), Gaps = 41/506 (8%)

Query: 314 YFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                E      +   P+    +  +G+    N    ++T Y + + I     L  L   
Sbjct: 102 LLSRKEEELHTILQNMPVMVDALDYNGDFVLWNRECEIVTGYTAEEIIGNPNALQLLYPD 161

Query: 373 PKLSDNNAIKPVM----LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
                    K +         +      +  + TI W+                      
Sbjct: 162 HNYRHQIQTKFLTCGKNFRDWEMHLTCKNGEIKTIMWSN-----------ISEQFPVTGY 210

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
               +  +    +  + +++ +  +L  I +A  D   +   +G I+         F  P
Sbjct: 211 SYWAVGVDITHLKAIEDQLKQQTSELELIFKALPDLCFLTEDDGTIIDYKAGSPSKFYVP 270

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            +  + K F   L           + ++        +E           +         L
Sbjct: 271 AQAFMGKKFFEVLPSPVAQQFQEAIHQVKEKGTNVIVEYPLTI---NGSVDFFEARCLPL 327

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                  + + DI+E K+ +  L+ +  +A           A V+HE+R PLT I GF +
Sbjct: 328 LHDK-IMIIVRDITERKKTEELLNKSDTLA-----AIGQLAAGVAHEVRNPLTVIKGFIQ 381

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
                    +      +Y + +      +  I+ + L I+K +     ++ E  ++ +  
Sbjct: 382 ------LFQINKEDQEKYFDLMLSEIERIEAILQEFLSIAKTD----EINTEQKNIYQIY 431

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
           +  +SL+   A    I +     N    I      +KQ+ +NIL N+I   P GG+I I 
Sbjct: 432 NNVVSLMNTKAIMTNIQVELYADNKDISIECSENQLKQVFINILQNSIEAMPDGGKITIH 491

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
               ++E VI+ V D G+G+    +++  +PF         + +GTG+GL L+  +++++
Sbjct: 492 IKEINDEGVIIHVIDEGIGIPEDRIKRLGEPFY------SSKEKGTGIGLMLSYKIIESH 545

Query: 789 MGKFYIFSTPAKGTLIEIIFPLYDTS 814
            G   I S    GT + I  P   + 
Sbjct: 546 QGNISIMSEVGVGTTVTIYLPKAQSE 571


>gi|84393909|ref|ZP_00992651.1| histidine protein kinase PhoR [Vibrio splendidus 12B01]
 gi|84375459|gb|EAP92364.1| histidine protein kinase PhoR [Vibrio splendidus 12B01]
          Length = 432

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 79/421 (18%), Positives = 158/421 (37%), Gaps = 36/421 (8%)

Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
                +    RL    W+ +            +         NGI       R  ++++ 
Sbjct: 42  QLGWHLHYQMRLSAWLWDEKR-------LTPPSGSGNWESLFNGIYRMQQRQRRKRKELT 94

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
             + +  +  E+  D + +   EG I+  N+    L G+   D   +P +  +       
Sbjct: 95  NLIRRFRNGAESLPDAVVVFRGEGNIVWCNKLAQYLLGFRWPDDSGQPISNLIRTPDFIK 154

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568
             +       L++   L    +          L + I        + + + D+++ KQ +
Sbjct: 155 YLNKQDFSEPLEMPSPLNVERM----------LELRIVPYTEGE-HLMVVRDVTQLKQLE 203

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
                           + +F A VSHE+RTP+T + G+ E+   +    +  P + +   
Sbjct: 204 G--------------MRRNFFANVSHELRTPMTVLQGYLEM--TEDPDMVVGPMWPKAHG 247

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            +    N +  +VN LL +SKIE+  M+   E V++   +          + ++   +  
Sbjct: 248 VMTEQLNRMNSLVNQLLTLSKIEAAPMHELDEVVNVPAMLEVLEKEAASLSGDREHKLEF 307

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748
               ++ R+LAD   ++    N++ NA+ +TP G  + +    TS     L V DTG G+
Sbjct: 308 DIDKSL-RVLADEDQLRSAISNLVYNAVKYTPPGATVKVRWYQTSQG-ACLDVSDTGDGI 365

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
               L +  + F ++  ++     G+GLGL + K  +  +     I S    G+      
Sbjct: 366 EPQHLHRLTERFYRVDKARSRDTGGSGLGLAIVKHALSHHDSHLEIQSEVGVGSRFHFTL 425

Query: 809 P 809
           P
Sbjct: 426 P 426


>gi|219847057|ref|YP_002461490.1| multi-sensor signal transduction histidine kinase [Chloroflexus
           aggregans DSM 9485]
 gi|219541316|gb|ACL23054.1| multi-sensor signal transduction histidine kinase [Chloroflexus
           aggregans DSM 9485]
          Length = 763

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 98/544 (18%), Positives = 200/544 (36%), Gaps = 58/544 (10%)

Query: 314 YFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
            FD       E +   P    +    G +   N     L        IE    +   L  
Sbjct: 228 LFDLAPLAEQEVIASLPDGLIILDSRGLIVEINQHAPRLLG------IEKERWIGRSLAH 281

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
              +         + +++ +     A   +I  N   ++ + F P    +          
Sbjct: 282 LVRNSPFGNDLQHILQANPSS----ANRPSILDNGTRAIEVRFRPL--QSATGIATGSLL 335

Query: 433 IEPEDVDTRINKRKMEIEVMQLC---SILEATSDG------------IAIINREGIILST 477
           +  +  +    +++    +  L    +I  + +              I +  +EG     
Sbjct: 336 LIRDVSERMRAEQERSRHIAALRLINAIARSANTAQETNSLLNTIARIIV--QEGHWERV 393

Query: 478 N-----------RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
           +                        +  +  T          +     E++ L    T +
Sbjct: 394 SIGLIDETKQHITVAVDYTVSGPGRLQGEVITGLPAAQLIKRIRQGRPELIQLSELDTDD 453

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSCYSL---------------TMHDISEWKQEKNKL 571
            +  G  +E     L   ++    ++                    +  I E   +    
Sbjct: 454 PLAAGLHREGLQSLLVAPLRHDHQATGILGFAGHEPKTMTPALSELVTAIGELITDAIIR 513

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
               +  +     K+ FLA VSHE+RTPLT+IIG+++V++    G L  P   E   Y+ 
Sbjct: 514 IRLYEQVQHADRLKTTFLATVSHELRTPLTSIIGYTDVLRRGILGELS-PEVQETLGYMR 572

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
           ++   ++  +ND+L+ S+IE+G++++  EPV +   +   +  +   A E+ + +  +  
Sbjct: 573 QASLNLMRQINDILEFSRIEAGQLSIEIEPVEVGAIIQNVVGQMLPQARERDLTVNVTIP 632

Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751
            +IP+I A++  ++Q+ +N+LSNAI F    G I IS        + + V+D+GVG+   
Sbjct: 633 PDIPQIAANIGRLEQVLINLLSNAIKFNRPQGWIEISVEPR-GAWLRINVKDSGVGIAPE 691

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
           + E+    F +  +    R  G GLGL + + ++    G   + STP +G++     P+ 
Sbjct: 692 DQERIFAEFQRARSPNGERVHGVGLGLAICRRLITHMGGTIGVTSTPGEGSVFYCDLPVI 751

Query: 812 DTSH 815
           +   
Sbjct: 752 NVEQ 755



 Score = 39.6 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 38/380 (10%), Positives = 105/380 (27%), Gaps = 24/380 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV--SDILHIDPNNHIGDLLKRQNTWYGK 146
           +D+ G + EI++  P+ +G    + IG  L  +  +     D    +  +L+   +   +
Sbjct: 250 LDSRGLIVEINQHAPRLLGIEKERWIGRSLAHLVRNSPFGND----LQHILQANPSSANR 305

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
            ++    GT     I++   P+ S     +G      + + R  ++     +   +  + 
Sbjct: 306 PSILD-NGTRA---IEVRFRPLQSATGIATG-----SLLLIRDVSERMRAEQERSRHIAA 356

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
           L  I     S    +       +    +  +     ++     +     T       S  
Sbjct: 357 LRLINAIARSANTAQETNSLLNTIARIIVQEGHWERVSIGLIDETKQHITVAVDYTVSGP 416

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
             L  +            + +          E                            
Sbjct: 417 GRLQGEVITGLPAAQLIKRIRQGRPELIQLSELDTDDPLAAGLHREGLQSLLVAPLRH-- 474

Query: 327 DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
           D        ++        P+   L    ++ ++     +   L       +      + 
Sbjct: 475 DHQATGILGFAGHEPKTMTPALSEL--VTAIGELITDAIIRIRLYEQVQHADRLKTTFLA 532

Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI--EPEDVD-TRIN 443
             S       ++ +      R   L       ++   +      N +    + ++ +RI 
Sbjct: 533 TVSHELRTPLTSIIGYTDVLRRGILGELSPEVQETLGYMRQASLNLMRQINDILEFSRIE 592

Query: 444 KRKMEIEVM--QLCSILEAT 461
             ++ IE+   ++ +I++  
Sbjct: 593 AGQLSIEIEPVEVGAIIQNV 612


>gi|300867058|ref|ZP_07111726.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300334955|emb|CBN56892.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 1106

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 108/853 (12%), Positives = 236/853 (27%), Gaps = 150/853 (17%)

Query: 90   DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
            D  G     +    +       ++IG    ++           I   +         +  
Sbjct: 272  DLQGRYVLANSATIEAFDRQPEEVIGNSDSELLSPEIAQEFLEIDRQIIATGKSLTYSQD 331

Query: 150  WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR-ALGKRLDKKFSHLH 208
            + + G         +            G    GI            AL +  ++  + + 
Sbjct: 332  FALRGEIRSFLTTKSV--YRDSEGNALGV--IGISRDITERKQAEIALQRANEELENRVE 387

Query: 209  EIKKGHSSVEKEK-YDIFSQQSPPPHLRMKNKVSSLTE---------------------- 245
            +       V K+    I  ++     LR   +   L                        
Sbjct: 388  KRTANLKQVLKQLQTQIAEREQAEEELRKSEERWQLALKGTNDGIWDWNPRNNELFMSSR 447

Query: 246  ----------------------YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY 283
                                   +    D +       L  +      +      + +  
Sbjct: 448  CKEMLGFEEWEIENDLNAWYSLLHPDDLDRVINAGQDNLEGKTPYFIAEYRIRCKDDSYK 507

Query: 284  TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF------FVYS 337
                    L+N        +      +     +E    +                 F+  
Sbjct: 508  WILGRAKALRNEEGLPVRMVGSIADITARKLAEEALRESEAKFQHLSANVPGMLYQFLLR 567

Query: 338  HG---NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394
                 +  Y +P+   + + +     E      TL+      D       ++ R+ +T  
Sbjct: 568  ADGSASYPYISPACREIFELEP----ETVKQNITLIHDLIHPDEREYYEQLVARAAQTLQ 623

Query: 395  AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
                    +  + +     +    +  +    +   +G+  +  D +  +  +     + 
Sbjct: 624  PWDWEGRFVLLSGKIKWIQSIS--QPEDLGNGDSIWHGLITDISDRKQAEEALRQSEERW 681

Query: 455  CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK--PFTVFLEQNTPSVMNHY 512
               L+  SDGI   N +   L T+    ++ GY   +I  +   +T  +  +  +++   
Sbjct: 682  QLALKGNSDGIWDWNIKTNELFTSARSKEIVGYEDHEIGNQLDEWTAIVHPDDLNLVMDA 741

Query: 513  LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEK 568
            + + L+      +        K+     +    K L            +  DIS+ KQ +
Sbjct: 742  MQDHLNQKTPYYVT-EHRHRCKDGSYKWILGRGKALWDEEGKPVRVVGSHTDISDRKQAE 800

Query: 569  NKLSHAKKIAEKESSHK-----------------------SDFLARVSHEIRTPLTAIIG 605
              L  ++    ++S                             +A ++HEI  P+  I G
Sbjct: 801  EALRQSEMREREKSQQLEKTLVQLRSTQAQLIQTEKMSSLGQLIAGIAHEINNPVNFIHG 860

Query: 606  -------FSEVIK---------------------NQRFGPLGNPRYIEYANYIDRSGNLV 637
                   + + +                       +      N    +  + +      +
Sbjct: 861  NITYVNDYVQELLGLLELYQQKYPQPSGEIVDRIEEIELEFLNEDLAKILSSMKVGTERI 920

Query: 638  LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR----ILIRTSFANN 693
              IV  L + S+++   M      V + E +   + ++Q     K     I +   F   
Sbjct: 921  RSIVLSLRNFSRLDESDMK----QVDIHEGIESTLLILQNRFKGKNNYPEIQLVKQF-GA 975

Query: 694  IPRILADLRSVKQIALNILSNAIHFTPSG-------------GQIIISTTHTSNEEVILR 740
            +P +      + Q+ +N+++NAI                   G+I I T  +  E  I++
Sbjct: 976  LPLVECYAGQLNQVFMNVIANAIDAIEQRFKGQSVEQIKANLGRIDICTKVSDRETAIVQ 1035

Query: 741  VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM-VDANMGKFYIFSTPA 799
            + D G GM      +   PF          G+GTGLGL ++  + V+ + GK    S   
Sbjct: 1036 ITDNGSGMPEAVKAQIFNPFFTTKA----VGKGTGLGLSISYQIVVEQHKGKLDCVSEVG 1091

Query: 800  KGTLIEIIFPLYD 812
            +GT   I  P+  
Sbjct: 1092 QGTTFIIEIPIRQ 1104



 Score =  110 bits (274), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 38/275 (13%), Positives = 85/275 (30%), Gaps = 7/275 (2%)

Query: 315 FDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
             E E    E V+        V + G + + N        Y S ++I     + T++   
Sbjct: 120 LRESEVKYRELVENANSIIVKVDAVGKITFFNEFSQRFFGY-SEEEIIGKNAIGTIIPHT 178

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
             S N+                       I+ N E  + +++      +          I
Sbjct: 179 DSSGNDLAAMGEDILQHPEKY-ICNEHENIRKNGE-LVWVSWRNKALVDDNGCFKEILAI 236

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
             +    +  ++  +     L +++E+  D I + + +G  +  N A  + F    E+++
Sbjct: 237 GNDISRRKQAEKAQKESYTLLQAVIESIPDPIYVRDLQGRYVLANSATIEAFDRQPEEVI 296

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS- 552
               +  L             +I++     T  +       E +       + +    + 
Sbjct: 297 GNSDSELLSPEIAQEFLEIDRQIIATGKSLTYSQDFALR-GEIRSFLTTKSVYRDSEGNA 355

Query: 553 -CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
                   DI+E KQ +  L  A +  E     ++
Sbjct: 356 LGVIGISRDITERKQAEIALQRANEELENRVEKRT 390



 Score =  108 bits (271), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 49/560 (8%), Positives = 132/560 (23%), Gaps = 69/560 (12%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
            +DA G +   +E   +  G    ++IG               N +      ++      
Sbjct: 140 KVDAVGKITFFNEFSQRFFGYSEEEIIGKNAIGTIIPHTDSSGNDLAA--MGEDILQHPE 197

Query: 148 TLWPIEGTNLY-----VPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
                E  N+      V +      +   N  F      G  +            K    
Sbjct: 198 KYICNEHENIRKNGELVWVSWRNKALVDDNGCFKEILAIG--NDISRRKQAEKAQKESYT 255

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL--RMKNKVSSLTEYYAHKDDVLKTEKY- 259
               + E       V   +       S       R   +V   ++      ++ +     
Sbjct: 256 LLQAVIESIPDPIYVRDLQGRYVLANSATIEAFDRQPEEVIGNSDSELLSPEIAQEFLEI 315

Query: 260 -PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
              + +   SL   +DF  +     +        +++   +   +      +     +  
Sbjct: 316 DRQIIATGKSLTYSQDF-ALRGEIRSFLTTKSVYRDSEGNALGVIGISRDITERKQAEIA 374

Query: 319 ENLTPETVD---------------KCPIPFFVYS--------------------HGNLFY 343
                E ++               +                             +  ++ 
Sbjct: 375 LQRANEELENRVEKRTANLKQVLKQLQTQIAEREQAEEELRKSEERWQLALKGTNDGIWD 434

Query: 344 ANP---------SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394
            NP             +  ++  +         +LL    L          L        
Sbjct: 435 WNPRNNELFMSSRCKEMLGFEEWEIENDLNAWYSLLHPDDLDRVINAGQDNL----EGKT 490

Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
                 + I+   ++   +        N+    +   G   +    ++ +  +     + 
Sbjct: 491 PYFIAEYRIRCKDDSYKWILGRAKALRNEEGLPVRMVGSIADITARKLAEEALRESEAKF 550

Query: 455 CSILEATSDGI--AIINREGIIL--STNRAVSKLFGYPVEDILR--KPFTVFLEQNTPSV 508
             +       +   ++  +G       + A  ++F    E + +        +  +    
Sbjct: 551 QHLSANVPGMLYQFLLRADGSASYPYISPACREIFELEPETVKQNITLIHDLIHPDEREY 610

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-YSLTMHDISEWKQE 567
               +            E   +  + + K +      + L      +   + DIS+ KQ 
Sbjct: 611 YEQLVARAAQTLQPWDWEGRFVLLSGKIKWIQSISQPEDLGNGDSIWHGLITDISDRKQA 670

Query: 568 KNKLSHAKKIAEKESSHKSD 587
           +  L  +++  +      SD
Sbjct: 671 EEALRQSEERWQLALKGNSD 690



 Score = 93.9 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 47/438 (10%), Positives = 116/438 (26%), Gaps = 53/438 (12%)

Query: 197 GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS--------PPPHLRMKNKVSSLTEYYA 248
            +  + K+  L E              I                 +  KN + ++  +  
Sbjct: 120 LRESEVKYRELVENANSIIVKVDAVGKITFFNEFSQRFFGYSEEEIIGKNAIGTIIPHTD 179

Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
              + L      +L   E  +  + +    N            L +++    E L+  N 
Sbjct: 180 SSGNDLAAMGEDILQHPEKYICNEHENIRKNGELVWVSWRNKALVDDNGCFKEILAIGND 239

Query: 309 PSLSAYFDEGEN----LTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIA 363
            S     ++ +     L    ++  P P +V    G    AN + +     +  + I  +
Sbjct: 240 ISRRKQAEKAQKESYTLLQAVIESIPDPIYVRDLQGRYVLANSATIEAFDRQPEEVIGNS 299

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSD----------RTCIAASARLHTIQWNRENSLAM 413
                L            + ++                   +        + +  N+L +
Sbjct: 300 DS-ELLSPEIAQEFLEIDRQIIATGKSLTYSQDFALRGEIRSFLTTKSVYRDSEGNALGV 358

Query: 414 T-FIPFEKANQFPENMPQNG---------------------IEPEDVDTRINKRKMEIEV 451
                     +  E   Q                       ++ +  +    + ++    
Sbjct: 359 IGISRDITERKQAEIALQRANEELENRVEKRTANLKQVLKQLQTQIAEREQAEEELRKSE 418

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK--PFTVFLEQNTPSVM 509
            +    L+ T+DGI   N     L  +    ++ G+   +I      +   L  +    +
Sbjct: 419 ERWQLALKGTNDGIWDWNPRNNELFMSSRCKEMLGFEEWEIENDLNAWYSLLHPDDLDRV 478

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWK 565
            +   + L       +        K++    +    K L            ++ DI+  K
Sbjct: 479 INAGQDNLEGKTPYFIA-EYRIRCKDDSYKWILGRAKALRNEEGLPVRMVGSIADITARK 537

Query: 566 QEKNKLSHAKKIAEKESS 583
             +  L  ++   +  S+
Sbjct: 538 LAEEALRESEAKFQHLSA 555



 Score = 73.1 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/179 (16%), Positives = 58/179 (32%), Gaps = 12/179 (6%)

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
            ++L              E +    I  E         K+    ++   ++E  +  I  
Sbjct: 87  GSALVAVLTGLLVFKWTREPIKLREIVQETT------GKLRESEVKYRELVENANSIIVK 140

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH--YLTEILSLDLRQTL 525
           ++  G I   N    + FGY  E+I+ K     +  +T S  N    + E +     + +
Sbjct: 141 VDAVGKITFFNEFSQRFFGYSEEEIIGKNAIGTIIPHTDSSGNDLAAMGEDILQHPEKYI 200

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEK 580
                   K  +L+ +    K L   +          +DIS  KQ +     +  + + 
Sbjct: 201 CNEHENIRKNGELVWVSWRNKALVDDNGCFKEILAIGNDISRRKQAEKAQKESYTLLQA 259


>gi|295687664|ref|YP_003591357.1| PAS/PAC sensor signal transduction histidine kinase [Caulobacter
           segnis ATCC 21756]
 gi|295429567|gb|ADG08739.1| PAS/PAC sensor signal transduction histidine kinase [Caulobacter
           segnis ATCC 21756]
          Length = 769

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 105/709 (14%), Positives = 238/709 (33%), Gaps = 58/709 (8%)

Query: 121 VSDILHIDPN--NHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGF 178
           V+ +   DP+    +  L +R  +           G   +V ++             +G 
Sbjct: 97  VAALGGADPDHAQKLSALFERGQSCAF-----DARGQGGWVSVE----------GRAAGA 141

Query: 179 RGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKN 238
             +  +      +     G     +F+   +     + +           +    +R   
Sbjct: 142 MAWLRLAPVSGHDA----GLPSAARFAAFVDSVVEPAWIAGADGQAVWGNTAF--VRAVG 195

Query: 239 KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE 298
             S+       K      +   +  + +    E   +  +   +   +     L+     
Sbjct: 196 AGSASAPALLGKSFDRAVDAMVVEAATKGERSEAIRWVNLEGRRRAFRLSAQPLEGGGVG 255

Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSV 357
            F          +   F +      ET++       ++S    L + N +F  L   +  
Sbjct: 256 VFCADVTEI-EDVRDAFKKHVEAHDETLNHIAEAVAIFSATRRLSFHNTAFAELWGLEP- 313

Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
             +        +LD  +                       A L   +     +  +  +P
Sbjct: 314 AWLADRPTHGEILDRLRQRRRLPETIDYAVWKA-------AELARYESLGPQADDLWHLP 366

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL----CSILEATSDGIAIINREGI 473
             +  +        G           + +++ +   L     + L+  +D +A+   +G 
Sbjct: 367 DGRTLKVVRQPHPLGGMLLIYSDITGELRLKAQYNALIQVQQATLDKLNDAVAVFGSDGR 426

Query: 474 ILSTNRAVSKLFGYPVEDILRK-PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT--- 529
           +   N A    +      +     F   +E   P + +      L   +     ++    
Sbjct: 427 LRLHNEAFETFWNVTPHALEAAGDFEGVVELCVPRLHDLAFWRELKGRVADPDPQMRAPT 486

Query: 530 --LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
                T +++++  +             +   D+++ ++ ++ L+      ++    K D
Sbjct: 487 SGEVRTSDDRIVVYQSRPLP---DGATLIAFADVTDTRELQSALADRSAALDEAERLKRD 543

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           F+  VS+E+RTPLT IIG+SE+++        + R   +   +  +   +   ++D+LD+
Sbjct: 544 FVGNVSYELRTPLTTIIGYSELLER---ADGLSERGRNHVAAVRAAATQLARSIDDVLDM 600

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707
           ++I++G+M L  + + + + +  A       A    + +      ++  I  D + + Q 
Sbjct: 601 AQIDAGEMALEIQDIRVSDLLMNAQERALKDAQLGGVTLAVECEEDVGLIRGDAKRLAQT 660

Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
             +++ NA+  TP GG++ +S    +  EV L V DTG G+  +        F       
Sbjct: 661 LDHLVENALRQTPPGGRVTLS-ARRALGEVRLDVSDTGRGVPFHVQAHIFDRFV------ 713

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
                G GLGL L KA+V+ + G   + S P  G+      P  +T  P
Sbjct: 714 GRDRGGPGLGLALVKALVELHGGWVALESEPGNGSTFTCHLP--ETQQP 760


>gi|298527820|ref|ZP_07015224.1| histidine kinase [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511472|gb|EFI35374.1| histidine kinase [Desulfonatronospira thiodismutans ASO3-1]
          Length = 375

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 85/366 (23%), Positives = 157/366 (42%), Gaps = 18/366 (4%)

Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
           E  +  +  ++ +G I   NR    L G   +D+  +  +  +     +        +  
Sbjct: 16  EHAAIILMTLDVDGRIQQANRFTHNLVG---KDVTGRLLSEVIV--DFTGSFDLQNALQQ 70

Query: 519 LDLRQTLE----------KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568
            D +                     +  K+L++   +  L         +   +E+    
Sbjct: 71  EDEQHLFNVNSHSGLPQTFYFRFMEQNGKILAV-GELNHLETEELRRNLVQLNNEFSNLN 129

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
            +L        K +  K+ FL   +H++R PL AI   SE +  +    L +  YI++  
Sbjct: 130 RELQKKNIELTKLNELKNHFLGMAAHDLRNPLGAIRNLSEFLLEEARDSLSDE-YIQFLE 188

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I  S N +L +++ LLDI++IE+GK+ L F+   L   +   + + ++ A +K+I IR 
Sbjct: 189 LIHTSSNFMLSLLDQLLDIARIEAGKLELDFQSTDLISLIKSVVDINKILAEKKKIQIRL 248

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748
                IP +  D   ++Q+  N+LSNAI F+P G  I +    +  E V + V D G G+
Sbjct: 249 EHFETIPYVELDSMKIEQVMHNLLSNAIKFSPEGNLIKVHVFLS-GEHVTVAVTDKGPGI 307

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
              +++K  +PF +         + TGLGL +   ++  +MGK ++ S   +GT      
Sbjct: 308 PEEDIQKLYQPFTKTSVKTPEGEKSTGLGLAIVHKIILGHMGKIWVESKVDQGTTFFFSL 367

Query: 809 PLYDTS 814
           P+   S
Sbjct: 368 PVKAES 373


>gi|206577924|ref|YP_002240145.1| phosphate regulon sensor kinase PhoR [Klebsiella pneumoniae 342]
 gi|206566982|gb|ACI08758.1| phosphate regulon sensor kinase PhoR [Klebsiella pneumoniae 342]
          Length = 431

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 74/427 (17%), Positives = 156/427 (36%), Gaps = 37/427 (8%)

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             +L       I     L  + W     L +         +        G+    +  + 
Sbjct: 33  WFLLAAVTGLLIWHFWNLMRLSW----WLWVDRSMTPPPGRGSWEPLLYGLHQMQMRNKK 88

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            +R++   + +  S  E+  D + +   EG I   N    ++      D   +     L 
Sbjct: 89  RRRELGSLIKRFRSGAESLPDAVVLTTEEGAIFWCNGLAQQILNLRWPDDSGQNILNLLR 148

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
                    +   +   D  + L  +   +        L I +        + +   D++
Sbjct: 149 YP------EFANYLKQRDFSKPLNLVLNNARH------LEIRVMPYTDKQ-WLMVARDVT 195

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  Q +                + +F A VSHE+RTPLT + G+ E+++ Q        +
Sbjct: 196 QMHQLEG--------------ARRNFFANVSHELRTPLTVLQGYLEMMQEQVLEGATREK 241

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                + +      +  +V  LL +S+IE+       + + +   +       Q  + EK
Sbjct: 242 A---LHTMREQTQRMEGLVKQLLTLSRIEAAPALAMNDRIDVPMMLRVVEREAQTLSQEK 298

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           +  +  +    + ++L +   ++    N++ NA++ TP G +I +S   T    +   V 
Sbjct: 299 Q-TLIFTVDEQL-KVLGNEEQLRSAISNLVYNAVNHTPPGTEIRVSWQRTPQGAL-FSVE 355

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G G+    + +  + F ++  ++  +  G+GLGL + K  V+ +  +  I ST  KGT
Sbjct: 356 DNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHAVNHHDSRLEIDSTVGKGT 415

Query: 803 LIEIIFP 809
               + P
Sbjct: 416 RFSFLLP 422


>gi|153868804|ref|ZP_01998545.1| sensory transduction histidine kinase [Beggiatoa sp. PS]
 gi|152074621|gb|EDN71458.1| sensory transduction histidine kinase [Beggiatoa sp. PS]
          Length = 655

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 80/255 (31%), Positives = 133/255 (52%), Gaps = 10/255 (3%)

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            D++  K  +  L  AK  AE  +  KS+FLA +SHEIRTP+ AIIGFS+++ ++    +
Sbjct: 150 QDLNTLKIAEQALKQAKDKAETANRAKSEFLANMSHEIRTPMNAIIGFSDILASK----I 205

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
            + + I Y + I  +   +L +++D+LD+SKIE+G++ + +E V+L         +  L 
Sbjct: 206 TDKKQINYISSIQTAAKSLLTLIDDILDLSKIEAGRLEIQYEEVNLQGIFIALQQVFSLK 265

Query: 679 ANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE- 736
             EK I         +P  +  D   ++Q+ LN++ NAI FT SG  + +       EE 
Sbjct: 266 IAEKNIEFIMEIDETLPPSLFLDETRLRQMLLNLMGNAIKFTNSG-YVKLCANKIDTEEN 324

Query: 737 ---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
              + L V D+G+G+   +     + F Q       +  GTGLGL + K +V+   G+  
Sbjct: 325 YIDLTLAVEDSGIGIPAEQQTLIFESFRQQDGQSTRQYGGTGLGLTITKRLVEMMNGQIS 384

Query: 794 IFSTPAKGTLIEIIF 808
           + S+P KG+  EI  
Sbjct: 385 LTSSPGKGSRFEIAL 399


>gi|158522710|ref|YP_001530580.1| PAS/PAC sensor hybrid histidine kinase [Desulfococcus oleovorans
           Hxd3]
 gi|158511536|gb|ABW68503.1| PAS/PAC sensor hybrid histidine kinase [Desulfococcus oleovorans
           Hxd3]
          Length = 1102

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 88/608 (14%), Positives = 183/608 (30%), Gaps = 55/608 (9%)

Query: 236 MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ-N 294
            + +      +        K  +  + +        +      +            ++ +
Sbjct: 377 PEEEFIRTFIHPDDLPAADKAFQGHIASGGHGQFEAEFRLRRADGTWCWVLCNGRAVEWD 436

Query: 295 NSKESFEYLSHRNHPSLSAYFDEG----ENLTPETVDKCPIPFFVYS--HGNLFYANPSF 348
            +      +    +        E     E       +  P    +     G L  AN  F
Sbjct: 437 ENGAVSRIIGLDVNIQSIKENQERLAASEARFRAVFENAPYAIVISDSETGQLLSANNEF 496

Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
           L                 + + D   L +  AI  +    +  +     A +   + +  
Sbjct: 497 LQRRGLDRTAL-----STANIWDFSSLPEEEAIDIINTLWTTGSIKNREATVT--RKDGS 549

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468
               +         +  +      +  +  + R  +  ++    +  S+ +     +A I
Sbjct: 550 LGHLLYSSVIL---EIEDKKQILTMTVDVTEKRQAEEALKQSEARFRSLFKMAPVPLAAI 606

Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS-------VMNHYLTEILSLDL 521
           +  G IL  N  ++++ GY ++D         L    P             +        
Sbjct: 607 SLNGEILDVNDRLTEVVGYTMDDAPTMDHWWRLAYPDPDYRKRLMAGWQDTIDRAAKSAT 666

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE 581
             T+      + K    +   +II          ++  DI+  K+ + +    ++   + 
Sbjct: 667 PVTMG-EIRVTCKNG--IERTMIIGANRIEESLLISFFDITARKKAEAEREKLQEQLLQA 723

Query: 582 S--SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639
                       V+H+    L AIIGF+E+          +    +Y   I ++     D
Sbjct: 724 QKLEAVGVLAGGVAHDFNNMLGAIIGFAELAIE---ATDSDSPQYKYLENILQAARHSAD 780

Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA 699
           +   LL  ++    K  +    + L+ +V   + ++      + I +          +  
Sbjct: 781 LTGQLLAFAR----KQTIVPTVLDLNASVEGLLKILS-RLMGENIELAWQPGPGHCTVRL 835

Query: 700 DLRSVKQIALNILSNAIHFTPSGGQIIIST--------------THTSNEEVILRVRDTG 745
           D   + Q+  N+  NA       G I + T                T  E V+L V D G
Sbjct: 836 DPSQLNQVVTNLCINARDAIVDVGNITLETDTLFFDQDYCDTHAEFTPGEYVMLAVSDNG 895

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           VGM    ++    PF         +G+GTGLGL     +V  N G   ++S P  G+   
Sbjct: 896 VGMDRQTMDHVFDPFFTTKK----QGKGTGLGLATVYGIVKQNNGFISVYSEPGNGSTFR 951

Query: 806 IIFPLYDT 813
           + FP +  
Sbjct: 952 VYFPRHRA 959


>gi|56750627|ref|YP_171328.1| two-component system sensor histidie kinase [Synechococcus
           elongatus PCC 6301]
 gi|56685586|dbj|BAD78808.1| two-component system sensor histidie kinase [Synechococcus
           elongatus PCC 6301]
          Length = 628

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 84/394 (21%), Positives = 170/394 (43%), Gaps = 40/394 (10%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           ++  E  +L +++   +DG  +++ +  ++  N A  ++FG+    +        L    
Sbjct: 234 ELTSEKAKLETLVSTIADGALLLDADLNLVLVNPAAIRIFGWEGRSLKGDDVIDHLPSPL 293

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDIS 562
              ++  L  I +   R+ +E       +  + + + +        +     ++T+ DI+
Sbjct: 294 AQELHDPLKAI-ANGDREAVELRLTLPERSNRTVRILVSNVLDTARANVKGIAVTVQDIT 352

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
                            + +  KS F++ VSHE+RTPL  I  F E + +     L    
Sbjct: 353 R--------------EVELNEAKSQFISNVSHELRTPLFNIKSFIETLHD-YGDDLSEEE 397

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             E+ +  +   + +  +VND+LD S +ES +   +FE + L + + + +   QL A EK
Sbjct: 398 RREFLSTANHETDRLTRLVNDVLDPSWLESNR-RYNFEGIDLVQPIEQTLRTYQLNAREK 456

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN-------- 734
            I +R+  A ++P + A+   + Q+  N++ NA+ FT SGG + +               
Sbjct: 457 GIELRSEIARDLPAVRANYDLLLQVFANLVGNALKFTASGGCVAMRAYLVGQPLRTEAVN 516

Query: 735 --------EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
                     + + + DTG+G+   + E     F ++ N +    EGTGLGL + + +V+
Sbjct: 517 HSEIVSSLPNIRIEINDTGIGIDAEDQEAIFDRFFRVEN-RVHTLEGTGLGLSIVRNIVE 575

Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820
            +  + ++ S    GT      P+Y    P + I
Sbjct: 576 KHQSRIHLISEVGIGTTFWFDLPIY---QPEEAI 606


>gi|188494704|ref|ZP_03001974.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           53638]
 gi|188489903|gb|EDU65006.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           53638]
          Length = 514

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 94/467 (20%), Positives = 199/467 (42%), Gaps = 30/467 (6%)

Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
            +   +   +I      + L +  +         +++  +    I+    +   +    N
Sbjct: 64  SMLPIERNGEILGYIWANELTEDIRRQAWKMDVRIIIVLTAGLLISLLLIVLFSRRLSAN 123

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN--KRKMEIEVMQLCSILEATSDGIAI 467
              +T      A   P  +PQ   E   +   +N   + +         I+E  +DG+  
Sbjct: 124 IDIITDGLSTLAQNIPTRLPQLPGEMGQISQSVNNLAQALRETRTLNDLIIENAADGVIA 183

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
           I+R+G + + N A   + GY   +++ +P+++       +     + + L          
Sbjct: 184 IDRQGDVTTMNPAAEVITGYQRHELVGQPYSMLF---DNTQFYSPVLDTLEHGTEHV-AL 239

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
                 ++ + + L +   ++  +        +   D++  K+ + +++ A+++A     
Sbjct: 240 EISFPGRD-RTIELSVTTSRIHNTHGEMIGALVIFSDLTARKETQRRMAQAERLAT---- 294

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
              + +A V+HE+R PLTAI G+ ++++ Q   P+    + EY + + +  + +  ++  
Sbjct: 295 -LGELMAGVAHEVRNPLTAIRGYVQILRQQTSDPI----HQEYLSVVLKEIDSINKVIQQ 349

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703
           LL+ S+    +    ++ VSL+  V E + LVQ    + R+   +   N +  I AD   
Sbjct: 350 LLEFSRPRHSQ----WQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSPINADREL 405

Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
           +KQ+ LNIL NA+    + G+I I T   S+ +  + + D G G+     +K   PF   
Sbjct: 406 LKQVLLNILINAVQAISARGKIRIQTWQYSDSQQAISIEDNGCGIDLSLQKKIFDPFFTT 465

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             S      GTGLGL L++ +++A+ G   + S P  G    +I P+
Sbjct: 466 KAS------GTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILPI 506



 Score = 40.8 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/117 (10%), Positives = 37/117 (31%), Gaps = 6/117 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G +  ++       G    +++G     +    +    + + D L+          
Sbjct: 184 IDRQGDVTTMNPAAEVITGYQRHELVGQPYSMLF--DNTQFYSPVLDTLEHGTEHVALEI 241

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
            +P     + + +  +   I++ + E  G     I        + +    + ++  +
Sbjct: 242 SFPGRDRTIELSVTTS--RIHNTHGEMIGA--LVIFSDLTARKETQRRMAQAERLAT 294


>gi|116052653|ref|YP_792968.1| kinase sensor protein [Pseudomonas aeruginosa UCBPP-PA14]
 gi|237651845|gb|AAM15532.2|AF482691_1 probable sensor kinase [Pseudomonas aeruginosa]
 gi|115587874|gb|ABJ13889.1| kinase sensor protein [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 931

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 103/648 (15%), Positives = 224/648 (34%), Gaps = 46/648 (7%)

Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254
                 +++ + L+ +      +   +  +    +    L + +    L        D+ 
Sbjct: 64  EAQLYFEQREALLNHLSGNVVPLAAGRALVNEAPNNVSILPLSDGGRGLLLTARTLGDLR 123

Query: 255 KTEKY--PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
           +       L+ +++  L  +           +        +         +         
Sbjct: 124 EKRLALMYLVDTDKGPLVYRLTADGRPSAAISSTITKEVYRALLATPSAPVHWVTDGGTP 183

Query: 313 AYFDEGENLTPETVD-KCPIPFFVYSHGNLFYANPS--------FLLLTKYKSVDDIEIA 363
                 E+L  E  +    +        ++   N +           +      + +   
Sbjct: 184 QRLYLFESLGDEPGEGWLGLEILGEDLDSMLRRNDAGNYMLLDQHGQVVLATDAEALGSG 243

Query: 364 GGLSTLLDAPK--LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
              + L       +      + ++L++   +          I            +    A
Sbjct: 244 ASRTLLRGDGFGFIGAGPLPQHMVLFQHVGSSSWDLIYHIGIGRLLLALWLPLLLASALA 303

Query: 422 NQFPENMPQNGIEPE---DVDTRINKRKMEIEVMQLCSILEATSDGIAIINR-EGIILST 477
                 +       E       +     ++       ++++A    + ++ R +  ++  
Sbjct: 304 LAVGILLHWLVRSIERRLIEPAKRRLEALKESEAFSRAVIQAAPVALCVLRRADAAVVLE 363

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
           N    +  G         P               ++++  +  ++ + E+     T+   
Sbjct: 364 NPQARQWLGDSEAIAHDAP--------------RWISQAFAGGVKCSGEE---LETEAGL 406

Query: 538 LLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
            L L     +            +IS  K+ + +L+ AK +A+  +  K+ FLA +SHEIR
Sbjct: 407 HLHLNYTPTRYNGEDVLFCAFSEISARKRMEAELARAKSLADAANEAKTLFLATMSHEIR 466

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TPL  ++G  E++           +   Y   I  S + +L +++D+LD+SKIE+G+++L
Sbjct: 467 TPLYGMLGTLELLGRTELSR----QQAGYLKAIQHSSSTLLQLISDVLDVSKIEAGQLDL 522

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAI 716
                S  E   E +      A  K + + T  +  +P R+     S++QI  N+LSNA+
Sbjct: 523 ECVEFSPLELTEEVVQSFTGAAQAKGLQLYTCLSAELPLRMRGAAASIRQILNNLLSNAV 582

Query: 717 HFTPSGGQ-IIISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
            FT +G   + +  +    E V+L   V DTG+G+   +  +  +PF QI  S+     G
Sbjct: 583 KFTDNGYVNVHLKASVVDAECVMLTWQVNDTGMGINVEDQPRLFEPFYQIRRSEHPVA-G 641

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD---TSHPHD 818
           TGLGL +++ +     G   + S    G+   +  PL      + P D
Sbjct: 642 TGLGLSISQRLAQLMNGSLKLVSELGLGSSFSLRLPLERIAMQAEPQD 689


>gi|163739230|ref|ZP_02146642.1| periplasmic sensor hybrid histidine kinase [Phaeobacter
           gallaeciensis BS107]
 gi|161387630|gb|EDQ11987.1| periplasmic sensor hybrid histidine kinase [Phaeobacter
           gallaeciensis BS107]
          Length = 759

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 84/267 (31%), Positives = 137/267 (51%), Gaps = 9/267 (3%)

Query: 555 SLTMHD-ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
              + D  SE  + +  L  A+K A+  +  KS+FLA +SHEIRTP+  +IG +E+I   
Sbjct: 209 VGVLEDTFSERDEREYALEEARKAADIANRAKSEFLANMSHEIRTPMNGVIGMAELILET 268

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
                 +     YA  I +SG+ +L I+ND+L+ SKIE+GKM L   P +L  A+ + ++
Sbjct: 269 DL----DEDQTMYAETISKSGSALLTIINDILNFSKIEAGKMELERAPFNLQTAIEDVVT 324

Query: 674 LVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTH 731
           L+   A EK + +   +  ++P     D+  ++QI  N+  NA+ FT  G   I +S   
Sbjct: 325 LLSPKAAEKNVEVTLRYDPSLPECYEGDVGRIRQILTNVAGNAVKFTGKGYVYIEVSGET 384

Query: 732 TSNEE-VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
             +   + + V DTG G+    L++    F Q   +     EGTGLGL ++  +++   G
Sbjct: 385 DDDRTALRISVTDTGAGIPEDRLDRIFNAFEQADGAATRNYEGTGLGLAISTRLLELMGG 444

Query: 791 KFYIFSTPAKGTLIEIIFPLY-DTSHP 816
           +  + S   KG++  I  PL    S P
Sbjct: 445 RISVQSELGKGSVFAIDLPLRIRPSQP 471


>gi|94263458|ref|ZP_01287271.1| PAS [delta proteobacterium MLMS-1]
 gi|93456188|gb|EAT06327.1| PAS [delta proteobacterium MLMS-1]
          Length = 825

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 101/503 (20%), Positives = 193/503 (38%), Gaps = 49/503 (9%)

Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
           +        +  ++        +L A   + + A+  +   R+  + +     L  +   
Sbjct: 37  ALRQCRSPAAAGELLRRQPPEAILLALPPTTDAALPAIAEVRAHGSHLP----LLALSER 92

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM----EIEVMQLCSILEATS 462
            +   A   +     +   +N+         +     + ++         +L   L    
Sbjct: 93  DDTEFAFQVLAAGAQDYLVKNLLTASALERAIHLARVRMQLASGLRESRQRLELALAGAD 152

Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKP--FTVFLEQNTPSVMNHYLTEILSLD 520
            G+   +    + + +     + GY     L         +       + + +   L+  
Sbjct: 153 LGLWEWHLATDLFTFDGQWDTILGYHPAQPLTATEIRQQLIHPADLPRLQNAIKRHLAGA 212

Query: 521 LRQTLEKITLGSTKEEKLLSLRII-IKKLPFSSC----YSLTMHDISEWKQEKNKLSHAK 575
              TLE       +    + +                  + +  +I++ K  +  L  + 
Sbjct: 213 TP-TLEAEYRWHHRTGHWVWVLDRGRVVERADDGTPLKMAGSNLNINQRKAAEEVLRRSH 271

Query: 576 KIAEKESSH---------------------KSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
           +     +                       KS+FLA +SHEIRTPL  IIG SE++    
Sbjct: 272 RQLAAANHRQAAASAEASRQAAAAAAANRAKSEFLANMSHEIRTPLNGIIGLSELLA--A 329

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                +P +  YA  I  SG  +L I+ND+LD SKIE+G + L  +  +L +AV+  + L
Sbjct: 330 APENLDPEHRRYAGLIHDSGQALLTIINDILDFSKIEAGHLELAEQQFNLHDAVTTTLEL 389

Query: 675 VQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
            +  A  K I ++  ++  +P  +L D + ++Q+ LN+LSNA+ FT SG +I++      
Sbjct: 390 AKATAGAKDIPLKLEYSPELPGELLGDPQRLRQVLLNLLSNALKFTESG-EIVLRLAAAD 448

Query: 734 NEE--------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
                      +   V+DTG+G+    LE+  + F Q   S      GTGLGL + + +V
Sbjct: 449 QAPATSAPALPISFTVKDTGIGIAAERLEQIFEAFNQADTSSTRHQAGTGLGLAIVRRLV 508

Query: 786 DANMGKFYIFSTPAKGTLIEIIF 808
            A  G   + S P +G+  ++I 
Sbjct: 509 TAMGGTIKVESEPGQGSSFQVII 531


>gi|88860280|ref|ZP_01134918.1| aerobic respiration control sensor protein arcB [Pseudoalteromonas
           tunicata D2]
 gi|88817478|gb|EAR27295.1| aerobic respiration control sensor protein arcB [Pseudoalteromonas
           tunicata D2]
          Length = 770

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 78/403 (19%), Positives = 172/403 (42%), Gaps = 25/403 (6%)

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
             +    + +  E  + +  + ++  + + L SI++++ D     +  G     NR  ++
Sbjct: 122 QAKRRAIDELRKEIAERKRTQLELAEQGVLLRSIVDSSPDLFYYRDDHGNFAGCNRMFAE 181

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           + G P E ++ K             + +   E+       TL+          ++    +
Sbjct: 182 VMGIPAEQLIGKKAEEIYCSQILPSVLNTDKEVEQQQKSLTLDVQYPV---NGEVRWFEM 238

Query: 544 IIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                  +            DI+  K+ +  L       E+    K  F+A +SHE+RTP
Sbjct: 239 RKVPFFNAKQEYIGLLGFGRDITSRKEAEQAL-------EQAFKDKGKFIATLSHELRTP 291

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  I+G + ++         N     + N +  S   + +I ND++D+ K++  ++++  
Sbjct: 292 LNGIVGLTRMLLETDL----NANQRSWCNTVFSSAETLGNIFNDIIDLDKVDRDQLDIAC 347

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA--DLRSVKQIALNILSNAIH 717
           E V++ + +++ I+   L A +K +         +  I A  D   ++Q+  N+++NA+ 
Sbjct: 348 ESVNVSDFLNDVINFGGLIAQQKDLDFLVE-QQGVLDIYAQLDPTRLRQVLWNLINNAVK 406

Query: 718 FTPSGGQIIISTTHT---SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           FT  G  + +         +  +++ V D+G+G+    L++    + ++P+       G+
Sbjct: 407 FTARGS-VKLRCIREYRVKDTWLVIEVIDSGIGIAQEHLKRIFDMYYKVPDINGGNALGS 465

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
           G+GL + KA++ A  GK  +FS  + G+   I  PL  ++ P 
Sbjct: 466 GIGLAVTKALITAMGGKLEVFSEQSVGSRFRIEVPLKLSAAPQ 508



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/139 (12%), Positives = 42/139 (30%), Gaps = 13/139 (9%)

Query: 63  SNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV- 121
           +     +               F +  D HG     +    + +G  A ++IG +  ++ 
Sbjct: 141 TQLELAEQGVLLRSIVDSSPDLFYYR-DDHGNFAGCNRMFAEVMGIPAEQLIGKKAEEIY 199

Query: 122 ---SDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGF 178
                   ++ +  +    K           +P+ G       ++  +P ++  +E+ G 
Sbjct: 200 CSQILPSVLNTDKEVEQQQKS----LTLDVQYPVNGE--VRWFEMRKVPFFNAKQEYIGL 253

Query: 179 RGFGIVHVNRVDNDPRALG 197
            GFG         +     
Sbjct: 254 LGFG--RDITSRKEAEQAL 270



 Score = 41.2 bits (95), Expect = 0.66,   Method: Composition-based stats.
 Identities = 27/193 (13%), Positives = 52/193 (26%), Gaps = 11/193 (5%)

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
           +   L  ++ +    ++   +N     +K  F   +    E  + ++ R    L     E
Sbjct: 90  ENATLQGKQLNQTLTDNIQRLNSEIDERKMAFQAKRRAIDELRKEIAERKRTQLELA--E 147

Query: 318 GENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
              L    VD  P  F+    HGN    N  F  +    +   I        +  +  L 
Sbjct: 148 QGVLLRSIVDSSPDLFYYRDDHGNFAGCNRMFAEVMGIPAEQLIGKK--AEEIYCSQILP 205

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
                  V+    +      S  L                     N   E +   G   +
Sbjct: 206 S------VLNTDKEVEQQQKSLTLDVQYPVNGEVRWFEMRKVPFFNAKQEYIGLLGFGRD 259

Query: 437 DVDTRINKRKMEI 449
               +  ++ +E 
Sbjct: 260 ITSRKEAEQALEQ 272


>gi|152989138|ref|YP_001348375.1| kinase sensor protein [Pseudomonas aeruginosa PA7]
 gi|150964296|gb|ABR86321.1| kinase sensor protein [Pseudomonas aeruginosa PA7]
          Length = 936

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 107/653 (16%), Positives = 215/653 (32%), Gaps = 55/653 (8%)

Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD 251
              AL   L      L   +   S    +   +     P         +S+         
Sbjct: 71  QREALLDHLSGSVVPLAAGRALVSEASNDGQALPPSILPLGGSGQGLLLSARELAELGDK 130

Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
            +                          +     +  +   Q        +L+       
Sbjct: 131 RLGLLYAVDAGNGPAIHRLVSGVGSESPITAALAEALYRASQAAPAARIHWLAEGGERRR 190

Query: 312 SAYFDEGENL--------------TPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSV 357
              F+  +                    + +     ++   G+      +F         
Sbjct: 191 LFLFEALDGGHGGGWLGLEIHGEILDAILRRAGAGSYLLLDGHGQV---AFAEEGGSLRA 247

Query: 358 DDIEIAGGLSTL-LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
           +++                   +    + L +   +          I+           +
Sbjct: 248 EELRALAQGDGFGFIGSAPMPQH----MALLKHIGSSNWVLVYCIGIERLLLALWQPLLL 303

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEI---EVMQLCSILEATSDGIAIINR-EG 472
            F  A      + + G   E+   +   +++E          ++++A    + ++ R + 
Sbjct: 304 AFSLAIGVGTLLRRLGRRIEERLMKPAAQRLEALKESEAFSRAVIQAAPVALCVLRRADA 363

Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
            ++  N    +  G    +++R+    ++                        E  T   
Sbjct: 364 AVVLENPQARQWLG--GGEVVRRAAPGWIA-----------RAFAEGGEPVGEELETEA- 409

Query: 533 TKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
                 L L   I +            DIS  KQ + +L+ AK +A+  +  K+ FLA +
Sbjct: 410 ---GLHLYLSYTITRYKGEDVLFCAFSDISARKQIEAELARAKLLADAANEAKTLFLATM 466

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHEIRTPL  ++G  E++           +   Y   I RS   +L +++D+LD+SKIE+
Sbjct: 467 SHEIRTPLYGVLGTLELLGRTELSR----QQAGYLQAIQRSSATLLQLISDVLDVSKIEA 522

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNI 711
           G+++L     +  E   E +      A+ K + +    +  +P  +     S++QI  N+
Sbjct: 523 GQLDLESMEFAPVELTEEVVQSFAAAAHAKGLQLYACLSPELPERMRGAAASIRQILNNL 582

Query: 712 LSNAIHFTPSGG-QIIISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
           LSNA+ FT +G   + +  +    E V+L   V DTG G+   +  +   PF Q+  S+Q
Sbjct: 583 LSNAVKFTDNGHISVRLKASVVDAECVMLTWQVNDTGTGVAAEDQHRLFDPFYQVRRSEQ 642

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD---TSHPHD 818
           +   GTGLGL +++ +     G   + S    G+   +  PL      + P +
Sbjct: 643 LLA-GTGLGLSISQRLAQLMNGNLRLVSELGLGSSFSLRLPLERIAVQAEPQE 694


>gi|134078778|emb|CAK96891.1| unnamed protein product [Aspergillus niger]
          Length = 792

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 96/508 (18%), Positives = 192/508 (37%), Gaps = 30/508 (5%)

Query: 315 FDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
             +            P P   +    ++   + S +          +            P
Sbjct: 69  AQQPPAALGRIYRYTPTPSVILDPSLHVVEVSDSHVAFAGLSRALLLGRFICDICPRILP 128

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
            L        +    + +   +          +      +   P  + +     + +   
Sbjct: 129 ALDVAILFGALRAAITTQDVQSIDKICID---DASTCYTLRITPIFENSNLLYIVLEALD 185

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDI 492
             +   T ++K            +L+   D  I +++  G I++ N   + L GY  ++I
Sbjct: 186 ITKRQATSVSKPHESYSNETYKVLLDTVKDYAIFMLDTHGHIVTWNTGAALLKGYSAKEI 245

Query: 493 LRKPFTVFLEQNTPSVMNH--YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
           + + F+ F              L   L       +E       K+       ++I  +  
Sbjct: 246 IGRHFSTFYSLEDRMADKPGKELEVCLREGK---VEDEGWRYRKDGSRFWANVLITPMYA 302

Query: 551 SS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
                 ++    D++E    + ++       E+ S  K+DFLA +SHEIRTP+  ++   
Sbjct: 303 LGRHIGFTKVTRDLTERNAAETRMI---AAFEESSRLKTDFLANMSHEIRTPMNGMLLA- 358

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
                       N +  EY++ I+ S N++L ++ND+LD SK+ SG   LH +  S+D  
Sbjct: 359 ---LTSLLATDLNEQQREYSSIIEDSTNVLLQVINDVLDYSKLSSGSFTLHPDTFSVDSI 415

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII 726
            +  +   +  A +  + + +S ++N P ++  D    +Q+  N++ NA+ FT  G  + 
Sbjct: 416 TNAVVRNCKG-ALKTGVQLTSSISSNFPSQVEGDPLRYRQVLQNLVGNAVKFTEEG-YVK 473

Query: 727 ISTTHTSNEE------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
           I+TT + + E      +   V DTGVG+    L     PF +   +   R +GTGLGL +
Sbjct: 474 INTTFSEDAEDPSVYYIRTEVADTGVGVPEDALGSLFTPFTRFAETGSKRYQGTGLGLSI 533

Query: 781 AKAMVDANMGKFYIFSTPAK-GTLIEII 807
            K++ +   G       P + G++  + 
Sbjct: 534 CKSLAELMDGSVGYRPNPERHGSVFWVT 561



 Score = 55.0 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/124 (14%), Positives = 41/124 (33%), Gaps = 7/124 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH--IDPNNHIGDLLKRQNTW 143
            + +D HG++   +       G  A ++IG        +     D      ++  R+   
Sbjct: 218 IFMLDTHGHIVTWNTGAALLKGYSAKEIIGRHFSTFYSLEDRMADKPGKELEVCLREGKV 277

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +   +  +G+  +  + +   P+Y+  R   GF    +       N          ++
Sbjct: 278 EDEGWRYRKDGSRFWANVLI--TPMYALGRHI-GFTK--VTRDLTERNAAETRMIAAFEE 332

Query: 204 FSHL 207
            S L
Sbjct: 333 SSRL 336


>gi|86146354|ref|ZP_01064678.1| sensor histidine kinase/response regulator [Vibrio sp. MED222]
 gi|85835833|gb|EAQ53967.1| sensor histidine kinase/response regulator [Vibrio sp. MED222]
          Length = 937

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 87/375 (23%), Positives = 161/375 (42%), Gaps = 28/375 (7%)

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
            + Q   +  A    I  +   G+           F + +   + +P T        +++
Sbjct: 168 RLQQYQEVFSAFLVLILGLGLSGV-----------FAFRLMHDVTQPITHM-----KNMV 211

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN 569
           +      L + +   +             +++ +    +           D+ E  ++  
Sbjct: 212 DRIRRGHLDVRIEGKMHGELDSLKNGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQLE 271

Query: 570 ----KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
               +L  AKK A++ +  KS+FLA +SHE+RTPL  +IGF+  +              +
Sbjct: 272 IQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTHLSN----SQTD 327

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           Y   I+RS N +L I+ND+LD SK+E+GK+ L   P     ++ E ++L    A+EK + 
Sbjct: 328 YLQTIERSANNLLSIINDILDFSKLEAGKLALENIPFEFQASLEEVVNLQATNAHEKGLE 387

Query: 686 IRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRV 741
           +       +P  ++ D   ++QI  N++ N+I FT  G     + + +    + E+   V
Sbjct: 388 LTLKIDPKVPPGVVGDPLRIQQILTNLVGNSIKFTERGNIDISVELRSQSEDSIELQFMV 447

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
           RDTG+G++  +  +  + F Q   S   R  GTGLGL + + +V    G+  + S   +G
Sbjct: 448 RDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQG 507

Query: 802 TLIEIIFPLYDTSHP 816
           +       L  T  P
Sbjct: 508 STFWFTLRLSTTDMP 522


>gi|83594872|ref|YP_428624.1| periplasmic sensor Signal transduction histidine kinase
           [Rhodospirillum rubrum ATCC 11170]
 gi|83577786|gb|ABC24337.1| Periplasmic Sensor Signal Transduction Histidine Kinase
           [Rhodospirillum rubrum ATCC 11170]
          Length = 478

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 86/482 (17%), Positives = 166/482 (34%), Gaps = 37/482 (7%)

Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
             +L    +   +        L     L     I  +                  I+   
Sbjct: 14  AAMLVCVPATAVLLGLTLWGRLSVGVALVAGVLIWTLTALLLRSILREFMVVSRHIRGLG 73

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
             S A          +  + +       +    R   + +  ++     +L    D + +
Sbjct: 74  GRSEAGEGAAPTPRLEIAQGLLGAAQHLDRGWRRRT-QALRDQLRSDEQVLNTLPDPLLM 132

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
           I +E ++   N A   LFG        +     L       +   +  +L+       + 
Sbjct: 133 IAKEAVVTRANEAARSLFGRDPA---GQEIITLLRD---PGVLDSVERVLAGGTA-PRQT 185

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM--HDISEWKQEKNKLSHAKKIAEKESSHK 585
           I +     E+   +R      P        +  HDI+  ++ +                +
Sbjct: 186 IWVMPGAVEREFEVRATPLPSPSIDGSVALLGLHDITALRRLE--------------QMR 231

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
           +DF+A  SHE+RTPL+++IGF+E +               +   +   G  +  ++ DLL
Sbjct: 232 ADFVANASHELRTPLSSLIGFTETLSTS--AKNDPEARERFLAIMLEQGRRMQRLIEDLL 289

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
            +S+IE  +     E V L   ++     +++ A EK + +      ++P  + D   + 
Sbjct: 290 SLSRIEMEEHTPPDEAVVLPGLIASVTRFLEIKAREKTMTLSVEAPPDLPPAIGDADQLS 349

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNE-----------EVILRVRDTGVGMTNYELE 754
           QI  N+L NAI +   G  + +                    + + V D G G+    L 
Sbjct: 350 QIFQNLLDNAIKYGRPGTPVEVRLAVVERGPPAMPAGLRAPCLRVSVIDHGEGIAKAHLP 409

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           +  + F ++  ++     GTGLGL + K +V  + G   I S P  GT + +  PL+   
Sbjct: 410 RLTERFYRVDKARSRALGGTGLGLAIVKHVVVRHRGAMTIESDPGLGTTVSVFLPLHGPR 469

Query: 815 HP 816
            P
Sbjct: 470 PP 471


>gi|255034108|ref|YP_003084729.1| PAS/PAC sensor signal transduction histidine kinase [Dyadobacter
           fermentans DSM 18053]
 gi|254946864|gb|ACT91564.1| PAS/PAC sensor signal transduction histidine kinase [Dyadobacter
           fermentans DSM 18053]
          Length = 799

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 108/789 (13%), Positives = 241/789 (30%), Gaps = 87/789 (11%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIG--MRLCDVSDILHIDPN-NHIGDLLKRQNT 142
            W+ D        +E + +  G    ++ G      D       D     I +++ +  +
Sbjct: 30  IWDWDLERGTLWWNEGMQEIFGYRPEEVEGGPNSWFDRIHPDDQDEVIKKIYEVINQGES 89

Query: 143 -WYGKTTLWPIEGTNLYV-----PIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRAL 196
            W         +G+  +V      I +   P+        G     I    R D      
Sbjct: 90  NWSDFYRFRRADGSYAHVHDRGYTIQINGKPVR-----MVG-SMMDISRQLRSDRAREES 143

Query: 197 GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256
            + L              + +++        +    +    +        + H  D  + 
Sbjct: 144 EESLKFAIQAAQLGTWNLNPIDRTALFNDRCKELYGYPAEADMYYERLVQFVHPADRSRV 203

Query: 257 EKYPLLTSEESSLPEQEDFHTINLN----QYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
                   +       +  + +N                  +     + +       +  
Sbjct: 204 IDAIERALDPLQRTPYDVRYRVNGATDRKLRWLHCTGQAYFDQEGTPYRFSGISREITSE 263

Query: 313 AYFDE----GENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
               E     +     T++      F V    N    +P+   +       ++     L 
Sbjct: 264 VTSQEKIAWADQQAAMTIEGSGAGSFMVTLATNEIIYSPTMAHIITGSENANMTRELLLE 323

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
           +L        NNA             +   AR     WN  +   +  +     +   E 
Sbjct: 324 SLHPEDVGIRNNAYAEAEAS----GELRYEARFV---WNDGSVHWVRVLGRYLYDSTGEA 376

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFG 486
           +  +GI  +  D   +++++++    L +++E      A+   ++ +I   N A+ K++G
Sbjct: 377 ISLSGIVMDITDRIESEQRLKVNEEHLRTLIEQAPVATALFVGKDMVIDIPNEAMLKVWG 436

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK--LLSLRII 544
                ++ KP    L +      +  L  I       + +        + +         
Sbjct: 437 -KGRSVIGKPLRDALPELEGQPFHAILDRIYQSGEAHSEQGARADLVVDGRLQTFYYDYT 495

Query: 545 IKKLPFSSC----YSLTMHDISEW-------------------------KQEKNKLSHAK 575
            K L  S            D++E                          +Q  ++L  A 
Sbjct: 496 YKPLKNSRGEVYAILDMAVDVTEQVISRQELERSEERYRQLASELERRVRQRTDELHQAN 555

Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
                 +++   F    SH+++ PL  I  F   + +     L +       N I  +  
Sbjct: 556 IELVNSNNNLQQFAYAASHDMQEPLRKIQSFGSRLLSTYSDKL-DDNGKYMLNRIQDASK 614

Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695
            +  +++DLL  S++ + +    F PV L E V+  ++ +++   E++  +       +P
Sbjct: 615 RMSAMIDDLLAYSRLTTREG--EFTPVELGEIVTSVLADLEISIQEQKTEVIVE---EMP 669

Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS---------------NEEVILR 740
            +  +   + Q+  N++SNA+ +        I   +                 +  + L 
Sbjct: 670 VVWGNGAQLTQLIQNLVSNAVKYRLPEQHSTIRIAYRDVDAAEKETLPKLLPDHHYIRLE 729

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V D G+G     L++  + F ++    +    G+G+GL L K +V  + G     S P +
Sbjct: 730 VSDNGIGFDEIYLDRIFQMFQRLHG--RSEFSGSGIGLALCKKVVQNHHGYITAKSQPGR 787

Query: 801 GTLIEIIFP 809
           G    +  P
Sbjct: 788 GATFIVYLP 796



 Score = 55.0 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/143 (13%), Positives = 49/143 (34%), Gaps = 6/143 (4%)

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF--LEQN 504
           + + + +   + +AT D I   + E   L  N  + ++FGY  E++   P + F  +  +
Sbjct: 12  LLLAIERFKLVAKATHDVIWDWDLERGTLWWNEGMQEIFGYRPEEVEGGPNSWFDRIHPD 71

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR---IIIKKLPFSSCYSLTMHDI 561
               +   + E+++       +        +     +      I+          +M DI
Sbjct: 72  DQDEVIKKIYEVINQGESNWSDF-YRFRRADGSYAHVHDRGYTIQINGKPVRMVGSMMDI 130

Query: 562 SEWKQEKNKLSHAKKIAEKESSH 584
           S   +       +++  +     
Sbjct: 131 SRQLRSDRAREESEESLKFAIQA 153


>gi|218710564|ref|YP_002418185.1| hybrid sensory histidine kinase BarA [Vibrio splendidus LGP32]
 gi|218323583|emb|CAV19820.1| Sensor protein barA [Vibrio splendidus LGP32]
          Length = 937

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 87/375 (23%), Positives = 161/375 (42%), Gaps = 28/375 (7%)

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
            + Q   +  A    I  +   G+           F + +   + +P T        +++
Sbjct: 168 RLQQYQEVFSAFLVLILGLGLSGV-----------FAFRLMHDVTQPITHM-----KNMV 211

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN 569
           +      L + +   +             +++ +    +           D+ E  ++  
Sbjct: 212 DRIRRGHLDVRIEGKMHGELDSLKNGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQLE 271

Query: 570 ----KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
               +L  AKK A++ +  KS+FLA +SHE+RTPL  +IGF+  +              +
Sbjct: 272 IQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTHLSN----SQTD 327

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           Y   I+RS N +L I+ND+LD SK+E+GK+ L   P     ++ E ++L    A+EK + 
Sbjct: 328 YLQTIERSANNLLSIINDILDFSKLEAGKLALENIPFEFQASLEEVVNLQATNAHEKGLE 387

Query: 686 IRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRV 741
           +       +P  ++ D   ++QI  N++ N+I FT  G     + + +    + E+   V
Sbjct: 388 LTLKIDPKVPPGVVGDPLRIQQILTNLVGNSIKFTERGNIDISVELRSQSEDSIELQFMV 447

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
           RDTG+G++  +  +  + F Q   S   R  GTGLGL + + +V    G+  + S   +G
Sbjct: 448 RDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQG 507

Query: 802 TLIEIIFPLYDTSHP 816
           +       L  T  P
Sbjct: 508 STFWFTLRLSTTDMP 522


>gi|169599701|ref|XP_001793273.1| hypothetical protein SNOG_02675 [Phaeosphaeria nodorum SN15]
 gi|160705302|gb|EAT89406.2| hypothetical protein SNOG_02675 [Phaeosphaeria nodorum SN15]
          Length = 1733

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 114/712 (16%), Positives = 217/712 (30%), Gaps = 105/712 (14%)

Query: 198  KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257
            ++   +              +K +     + +  P                   +    +
Sbjct: 665  RKKTSRAPAPTSATAQEQYSQKSEKRHSKRVTVNPIAEKSEDDVLTPRNDMTAKEEGSAQ 724

Query: 258  KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA-YFD 316
            +    T            +  +     +     T              R   + +     
Sbjct: 725  QPRQPTGPSDRGHSLLHSYGADFTSSFQSLPAATTPGGRPPPTPGHVRRGSITETFDMPP 784

Query: 317  EGENLTPETVDKCPIPFFVY--SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
              E+L    +D  P+  F    S G + + N  FL+     S   ++             
Sbjct: 785  PSESLLRTIIDSLPVQIFTAAPSTGAITWVNSKFLIYRGQDSRQVLQDPWD-----SIHP 839

Query: 375  LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
               ++ ++           +    RL       +             N+  + +   G  
Sbjct: 840  EDRSSYLEQWNKSLRTGQQLQQKVRLQRF---DQCYRWFYVRVAPLRNKRQQIVHWIGTN 896

Query: 435  PEDVDTRINK------RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
             +  +    +      ++      +  ++  ++   + +++ +  +   N       G  
Sbjct: 897  MDFHEQHTAELNSAKQQETAASEAKYRALANSSPQIVFVVSNKRGMTFCNSQWITFSGQS 956

Query: 489  VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR-----------QTLEKITLGSTKEEK 537
                L   F   +  +   V+   L E+                 +T    +      E 
Sbjct: 957  ESQALVSGFLEHVHPDD--VIKCKLPELSEDGAVNVPTSMPPEHGRTGSSSSSSDGSSET 1014

Query: 538  LLSLRIIIKKLPF-------------SSCYSLTMHDISEW-----------KQEKNKLSH 573
              ++   I + P              S+       D               K  + +   
Sbjct: 1015 ERTVTSPIGQSPDRMDMPQAKLSKLASTGILRVTKDAHGRSSYSTEVRLRNKDGEYRWHL 1074

Query: 574  AKKIAEKESSHKSD------------------------------FLARVSHEIRTPLTAI 603
             + + EK  +  S+                              FL+ +SHEIRTPL  I
Sbjct: 1075 VRILLEKSLAEDSEEETWYGTATDINDHKLLEQTLKETMDAKSKFLSNMSHEIRTPLNGI 1134

Query: 604  IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
             G    + +       N   +E+ N I  S + +L+++ND+LD+SK+E+G + L  E + 
Sbjct: 1135 SGMVNFLLDSIL----NAEQLEHVNIIKSSTDSLLNLINDILDLSKVEAGMIKLSMEWLH 1190

Query: 664  LDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSG 722
            L   + E   L    A +K + +       +P  +  D   ++Q+ LN++ NAI FT SG
Sbjct: 1191 LPSLIEEVNDLSMGLAIQKGLELNYLVDEGVPSMVKGDKFRIRQVLLNVVGNAIKFTSSG 1250

Query: 723  GQIIISTTHTSNEE----------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
             +I +     S E           V   V DTG G T  E +   K F QI  S   +  
Sbjct: 1251 -EIFVRCKVQSPERSGPLGDNETVVRFEVIDTGRGFTEQEAKFLFKRFSQIDASSTRQHG 1309

Query: 773  GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII----FPLYDTSHPHDCI 820
            GTGLGL ++   V+ + GK    S P KG+          P  +  HP   +
Sbjct: 1310 GTGLGLAISMQFVELHGGKMDARSVPNKGSTFFFTIKFGLP-TEEDHPPPAV 1360


>gi|258622337|ref|ZP_05717362.1| Signal transduction histidine-protein kinase barA [Vibrio mimicus
           VM573]
 gi|258585353|gb|EEW10077.1| Signal transduction histidine-protein kinase barA [Vibrio mimicus
           VM573]
          Length = 927

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 87/342 (25%), Positives = 156/342 (45%), Gaps = 19/342 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +F   +   + +P T        ++++      L + +   +        K    +++ +
Sbjct: 191 IFASRLMHDVTRPITHM-----KNMVDRIRRGHLDVRIEGKMHGELDSLKKGINAMAVSL 245

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
               +           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 246 SEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTP 305

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+  +   +          +Y   I++S N +L I+ND+LD SK+E+GK+ L  
Sbjct: 306 LNGVIGFTRQMLKTQLTN----SQTDYLQTIEKSANNLLTIINDILDFSKLEAGKLALEN 361

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P    E + E ++L    A+EK + I       IPR ++ D   ++Q+  N++ N+I F
Sbjct: 362 IPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKF 421

Query: 719 TPSGGQIIISTTHT----SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           T  G  I +S           ++   VRDTG+G++  +  +  + F Q   S   R  GT
Sbjct: 422 TERG-NIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGT 480

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           GLGL + + +V    G+  + S   +G+       L+ T  P
Sbjct: 481 GLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTLRLHTTELP 522


>gi|161521751|ref|YP_001585178.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           multivorans ATCC 17616]
 gi|189352086|ref|YP_001947713.1| two-component system capsular synthesis sensor histidine kinase
           [Burkholderia multivorans ATCC 17616]
 gi|160345801|gb|ABX18886.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           multivorans ATCC 17616]
 gi|189336108|dbj|BAG45177.1| two-component system capsular synthesis sensor histidine kinase
           [Burkholderia multivorans ATCC 17616]
          Length = 1001

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 117/671 (17%), Positives = 218/671 (32%), Gaps = 61/671 (9%)

Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE 245
                +   A  +RLD     L    +          D+   +    + R    +   T+
Sbjct: 96  ERTDPHATPAQLRRLDDAHGRLIVTGRAGLPSTAVLADLAHDRGAAAYSRYVALLFQQTD 155

Query: 246 YYAH--KDDVLKTEKYPLLTSEES-----------SLPEQEDFHTINLNQYTKKQYFG-- 290
             A      +       L+ +               L  + D   +     + + + G  
Sbjct: 156 MIAVSMPHTINAGLSAYLIGTGGDFIGIVGIQPVGRLTGRLDAIDVRALIRSVEPHRGIG 215

Query: 291 -TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV-------------- 335
             L+         L  R+   L            +   + PI + V              
Sbjct: 216 VPLRTIDGRDDALLDTRDDTLLGRPVWRLSRPVRDASGQ-PIAWLVINTRAQVGTIMKPD 274

Query: 336 YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIA 395
           Y+       +    +         +                   A+  V         + 
Sbjct: 275 YADDAHALVDARGTIAVGAPVEAALVERALA---FARAPGDVRAAVHRVGTRFVIGDRLP 331

Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL- 454
            S  +    ++  + +    +P                    +  R   R      ++L 
Sbjct: 332 ESDLVFVTTFSWRSVVEALAVPLGVTAGAALFAIAVLWLAIVLFDRRALRPAYRRAIRLI 391

Query: 455 ------CSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
                  +++     G+A+++  +G  + +N  +++         L K       ++   
Sbjct: 392 ESDALNRALIRTAPAGLALLSLADGDEIVSNETMARYERLAAGAPLGKRLWRAYREH--- 448

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQE 567
                  +        T E        +   +   I+  +         T+ DI+  KQ 
Sbjct: 449 ------RDASGYAKVVTCELPIAPDRADTPHVVANIMRTRYRGVDALLCTLTDITARKQM 502

Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
           + KL  A+  AE  +  KS FLA +SHEIRTPL AI+G  E++      P          
Sbjct: 503 EQKLHEARVAAESANKAKSTFLATMSHEIRTPLNAIVGNLELMARAPLAPTE----RRRL 558

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
           + I  S + +L I++D+LD+SK ES +M +   P  + + + +  +  +  A+ K + + 
Sbjct: 559 DTIASSSDALLRIIDDVLDLSKAESNQMTIERIPFDVRDVLDDIAAFYRPLASAKGLELT 618

Query: 688 TSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVR 742
              A  +    + D   ++QI  N++ NAI FT  G  + I             V +RV 
Sbjct: 619 CRVAPELADGYVGDPVRLRQIVSNLVDNAIKFTERGS-VSIDAQRVVRGAGGARVEIRVA 677

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG+G+    L      + Q   S   R  GTGLGLPL + +     G   + S   +GT
Sbjct: 678 DTGIGIPADSLPTLFDVYIQADASIYRRFGGTGLGLPLCRRIATLMHGDLLVDSREGEGT 737

Query: 803 LIEIIFPLYDT 813
            + +  PL + 
Sbjct: 738 TMCVTLPLPEA 748


>gi|16127084|ref|NP_421648.1| sensory box histidine kinase/response regulator [Caulobacter
           crescentus CB15]
 gi|221235881|ref|YP_002518318.1| PAS-family sensor histidine kinase [Caulobacter crescentus NA1000]
 gi|13424464|gb|AAK24816.1| sensory box histidine kinase/response regulator [Caulobacter
           crescentus CB15]
 gi|220965054|gb|ACL96410.1| PAS-family sensor histidine kinase [Caulobacter crescentus NA1000]
          Length = 653

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 119/497 (23%), Positives = 199/497 (40%), Gaps = 24/497 (4%)

Query: 321 LTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP---KLS 376
              E  +  P  F ++         N  +  L     V     A   S LL      +  
Sbjct: 15  ALQEAFEAAPEGFALFDAEDRCVIWNARYGELWSKWGVTLAVGATFESLLLAGLAAGRFP 74

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + N  +   L            R+  I+      L                         
Sbjct: 75  EANGDRAAWLAHQLGRRK--LDRIEEIREEFGEYLRFESRRTP-------AGGLITTCAN 125

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILRK 495
             + R  + +       L +I+E T   + + + + G  L  NRA     G P  ++L K
Sbjct: 126 LTNLRRREAQALAARSFLDTIVENTPAMLFVKDGDTGAFLLVNRAAENQLGVPRAELLGK 185

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK-LLSLRIIIKKLPFSSCY 554
               F  +            +++     T+++  L +    +  L  R I         +
Sbjct: 186 SDYDFFPKEQADAFAADDRRVIASGKLVTIDEEPLDTPHNGRRWLQTRKIAIPGEDGRRH 245

Query: 555 SLTM-HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
            L +  DI+E K     L+ A + AE  S  KS+FLA +SHEIRTPL  +IG +EV+   
Sbjct: 246 LLVICEDITERKAGAAALAEALQKAEAGSVAKSEFLANMSHEIRTPLNGVIGMAEVLSRT 305

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
                 +    E    I  SG  +  +++D+LD+SKIE+G + L  +P+ L EA++ A++
Sbjct: 306 AL----DDAQREMMEVILNSGRALNLLLSDILDLSKIEAGGLELSRDPLDLREAITAAVA 361

Query: 674 LVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTH 731
           + +  A  K ++ R +FA++    +L D   V+QI  N+ SNA+ FT +G  II   T  
Sbjct: 362 VFKAVAESKGLVFRLTFADDFHDHVLGDALRVRQIVANLTSNAVKFTTAGSVIIEARTLV 421

Query: 732 TSNEEV--ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
             +  +   + V+DTG G      ++  + F Q   S   +  GTGLGLP+A+ +     
Sbjct: 422 AEDGRIDLTVSVQDTGEGFDEDSADRLFERFQQADGSVTRKVGGTGLGLPIARRLARLMD 481

Query: 790 GKFYIFSTPAKGTLIEI 806
           G+    + P +G     
Sbjct: 482 GEISCVAHPGEGATFVF 498


>gi|307292977|ref|ZP_07572823.1| multi-sensor signal transduction histidine kinase [Sphingobium
           chlorophenolicum L-1]
 gi|306881043|gb|EFN12259.1| multi-sensor signal transduction histidine kinase [Sphingobium
           chlorophenolicum L-1]
          Length = 607

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 85/526 (16%), Positives = 177/526 (33%), Gaps = 35/526 (6%)

Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPF---------FVYSHGNLFYANPSFLLLT 352
            L  RNH    +   +  + T     +  +            + + G +   N     L 
Sbjct: 87  ALLWRNHHRTLSRARDLADGTRMLAAELNLLIDGAEDYAIYMLDAEGRVTIWNGGAERLK 146

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
            +   +             A  ++       +   +              I+ +    LA
Sbjct: 147 GWTEAEMAGQL--TDRFYPADVVASGKPTSLLAEAQHRGK---IEIDEWQIRKDGSEFLA 201

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG 472
                               I  +  D R     +      L SIL    D + +I+  G
Sbjct: 202 -HISITALKKPDGSLGGFATIVHDITDQRATLSSLRNSEAHLRSILSTVPDAMIVIDEGG 260

Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT--LEKITL 530
            ++S + A  +LFGY  E++L    ++ +        + +L   L    R+   + ++  
Sbjct: 261 TMVSFSTAAERLFGYTQEEVLGSNVSMLMPSPYRERHDGFLERYLRTGERRIIGIGRVVF 320

Query: 531 GSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESS--HKS 586
              K+     + + + +        ++  + D+++ ++ + +L   +      +      
Sbjct: 321 ALRKDGTTFPMELSVGEAAGESQRLFTGFIRDLTDRQRTQERLEQLQSELIHVARVSAMG 380

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIK--NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
              + ++HE+  P+TA+  + E ++    +  P   P   E              IV  L
Sbjct: 381 TMASTLAHELNQPITAVANYLEAVRDLLDQPDPDDLPDIREALTDAAGEAMRAGHIVRRL 440

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704
            D       +  +     +L   ++EA +   + A EK I  R    +    +L D   +
Sbjct: 441 RDF----VARGEVEKTVENLPNLINEAAAFGLMGAGEKSIETRMDIDHEAATVLVDKVQI 496

Query: 705 KQIALNILSNAIHFTPSGGQ--IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
           +Q+ +N++ NA+    +  +  + I T       V + V DTG GM      +  K F  
Sbjct: 497 QQVLVNLIRNAVEAMNARARPVLTIRTGPDQAGFVRVTVSDTGTGMAPEVAAQLFKAFVS 556

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
             +       G GLGL + + +V+AN G+ ++      GT      
Sbjct: 557 TKSD------GMGLGLSICRTIVEANGGRIWMEPAEGGGTQFHFTL 596



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/251 (10%), Positives = 57/251 (22%), Gaps = 10/251 (3%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + +DA G +   +    +  G    +M G  L D      +  +     LL        
Sbjct: 126 IYMLDAEGRVTIWNGGAERLKGWTEAEMAGQ-LTDRFYPADVVASGKPTSLLAEAQHRGK 184

Query: 146 KTT-LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
                W I          ++   +   +    GF    IVH         +  +  +   
Sbjct: 185 IEIDEWQIRKDGSEFLAHISITALKKPDGSLGGFA--TIVHDITDQRATLSSLRNSEAHL 242

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHL--RMKNKVSSLTEYYAHKDDVLKTE----K 258
             +         V  E   + S  +    L    + +V              +      +
Sbjct: 243 RSILSTVPDAMIVIDEGGTMVSFSTAAERLFGYTQEEVLGSNVSMLMPSPYRERHDGFLE 302

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
             L T E   +        +  +  T        +   +    +       +      E 
Sbjct: 303 RYLRTGERRIIGIGRVVFALRKDGTTFPMELSVGEAAGESQRLFTGFIRDLTDRQRTQER 362

Query: 319 ENLTPETVDKC 329
                  +   
Sbjct: 363 LEQLQSELIHV 373



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/254 (11%), Positives = 70/254 (27%), Gaps = 18/254 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY---- 144
           ID  G +   S    +  G    +++G  +  +    + + ++   +   R         
Sbjct: 256 IDEGGTMVSFSTAAERLFGYTQEEVLGSNVSMLMPSPYRERHDGFLERYLRTGERRIIGI 315

Query: 145 -GKTTLWPIEGTNLYVPIDLA-ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
                    +GT    P++L+         R F+GF         R   D +   +RL++
Sbjct: 316 GRVVFALRKDGTTF--PMELSVGEAAGESQRLFTGF--------IRDLTDRQRTQERLEQ 365

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
             S L  + +  +              P   +    +           DD+    +    
Sbjct: 366 LQSELIHVARVSAMGTMASTLAHELNQPITAVANYLEAVRDLLDQPDPDDLPDIREALTD 425

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
            + E+           +     + +   T++N      E  +     +     +   ++ 
Sbjct: 426 AAGEAMRAGHIVRRLRD--FVARGEVEKTVENLPNLINEAAAFGLMGAGEKSIETRMDID 483

Query: 323 PETVDKCPIPFFVY 336
            E          + 
Sbjct: 484 HEAATVLVDKVQIQ 497


>gi|255021586|ref|ZP_05293629.1| multi-sensor hybrid histidine kinase [Acidithiobacillus caldus ATCC
           51756]
 gi|254968974|gb|EET26493.1| multi-sensor hybrid histidine kinase [Acidithiobacillus caldus ATCC
           51756]
          Length = 1018

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 112/794 (14%), Positives = 246/794 (30%), Gaps = 86/794 (10%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ-NTWYGKTTLW 150
           HG       +   + G  A  +          ++  +    +  +L  +   W G     
Sbjct: 81  HGRPHHAVPDAADSSGFRAAGV--GSFASAPVVVDGEVAAAVLCVLDTRSRAWQGDELSL 138

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
             +     +             R  +  R   +      +                  + 
Sbjct: 139 LED---YALEFSATLQARVDAERLLTQLRAREV--ELTRERALLQTVIDSTPSLIAAIDD 193

Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270
           ++    V K    +  +            V       A+     +         E+  LP
Sbjct: 194 EQRFILVNKAFAQLLGKSPEALSRENLRAVLPTPVLVAYGALQAQIRSTGKPAREKLVLP 253

Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330
             E    +           G          +        +      + +        +  
Sbjct: 254 LGERQWHLLTTMAPLLGPDGQRVGFVVVVQDMTEIDALNADLHRLQDIQRRGERFARQGA 313

Query: 331 IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390
               + +       +  F  L              L   +D    +  +A     L   D
Sbjct: 314 WSLNLANGEMTI--SEGFARLLGLPPETRSIPQSQLRRRIDPAYHAAIDAALQQSLR--D 369

Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450
                    L  ++        +        +   + +   GI  +     +  R++   
Sbjct: 370 GGAFRFDYPL--VRQGNGPRTWLRARGDLVHDDDGKVVAMVGITQDITAE-LEARQLRES 426

Query: 451 VMQL-----------------CSILEATSDGIAII-----------------NREGII-- 474
             +L                   + +   D +  +                 +    I  
Sbjct: 427 QEKLLAGLNETVQSFLREVDSRMVWDRMLDQLLAMTGARYGFLGEVLFGIKPDPCLKIHA 486

Query: 475 ---LSTNRA---------VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522
              LS + A            +     ++++            P + +            
Sbjct: 487 ITNLSWSPASDALYAQVLAGDMLFCNPDNLIGAVMRSRAPVIVPDMRHEQRCGGTPPGHP 546

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---------------YSLTMHDISEWKQE 567
           +    + +   + E+L+ +  +  +                       +T+      +Q 
Sbjct: 547 ELHNYLGIPLFQGEELVGVVGVANREEGIDESLLNLLEPFFSTCAIMIVTLRQREAQRQY 606

Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
           + +L  +K+ AE+ +  KS FL+ +SHE+RTPL +I+GF++++   R  PL  PR   + 
Sbjct: 607 EQRLVESKEQAERANQAKSQFLSSMSHELRTPLNSILGFAQLLSTSRREPLS-PRQQGFV 665

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
            +I  +G  +L ++ND+L++++IE+G++    E +SL   + E   +V   A E+ + + 
Sbjct: 666 EHIRDAGQHLLSLINDVLNLARIEAGELTFSPEVLSLAALLRETSEMVADLARERDVQLL 725

Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST------THTSNEEVILRV 741
            +  ++   +  DL   +QI LN+LSNAI +   GG+++I +             + + +
Sbjct: 726 ETLGDDPLWVCVDLTRTRQILLNLLSNAIKYNRPGGRVLIRSLAPIPERAERPVCLGIAI 785

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            DTG+G+      +  +PF ++   +    EGTG+GL + K +V+   G+    S   +G
Sbjct: 786 SDTGIGIPADRQHRLFRPFERL-GQENGPIEGTGIGLMITKELVERMGGEIRFESREGEG 844

Query: 802 TLIEIIFPLYDTSH 815
           T   +  P +    
Sbjct: 845 TTFFVFLPAHRAEA 858



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 19/253 (7%), Positives = 59/253 (23%), Gaps = 13/253 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID       +++   + +G     +    L  V     +     +   ++       +  
Sbjct: 191 IDDEQRFILVNKAFAQLLGKSPEALSRENLRAVLPTPVLVAYGALQAQIRSTGKPAREKL 250

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           + P+     ++   +A  P+   + +  GF    +V      +   A   RL        
Sbjct: 251 VLPLGERQWHLLTTMA--PLLGPDGQRVGF--VVVVQDMTEIDALNADLHRLQDIQRRGE 306

Query: 209 EIKKGHSSVEKEKYDIFSQQS--------PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
              +  +          +           PP    +           A+   +    +  
Sbjct: 307 RFARQGAWSLNLANGEMTISEGFARLLGLPPETRSIPQSQLRRRIDPAYHAAIDAALQQS 366

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
           L         +       N  +   +     + ++  +    +      +      +   
Sbjct: 367 LRDGGAFRF-DYPLVRQGNGPRTWLRARGDLVHDDDGKVVAMVGITQDITAELEARQLRE 425

Query: 321 LTPETVDKCPIPF 333
              + +       
Sbjct: 426 SQEKLLAGLNETV 438


>gi|153837192|ref|ZP_01989859.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810]
 gi|149749609|gb|EDM60355.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810]
          Length = 882

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 83/266 (31%), Positives = 135/266 (50%), Gaps = 16/266 (6%)

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
               + E +++ +++ HAK+ A   +  KS FLA +SHEIRTPL  I+G +E++      
Sbjct: 355 VNRVVEEKQRQTHEILHAKESAVAANRAKSVFLANMSHEIRTPLNGIMGMTEILSQSELS 414

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
           P       E  + ID S + +L ++ND+LD+SKIESG++ L      + E V +++ L Q
Sbjct: 415 P----HQQEVVDDIDTSSHTLLALLNDILDLSKIESGRLELSLVEADIREVVYQSVILFQ 470

Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS-- 733
             A  K++ +  S   NIP R++ D   +KQI  N++SNA+ FT  G  I +  ++    
Sbjct: 471 SKATSKQLELDISLDENIPARVMVDDHRIKQIITNLVSNAVKFTEQG-YISVDVSYEEAL 529

Query: 734 ---NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
                 +   ++D+G+G+   +L    +PF Q       +  GTGLGL + + +V    G
Sbjct: 530 EQGRGSLTFLIKDSGIGIERDKLATIFEPFTQEDEGVSRQFGGTGLGLAICRQLVSMMGG 589

Query: 791 KFYIFSTPAKGTLIEII-----FPLY 811
           K    ST   GT           PL+
Sbjct: 590 KLVATSTKGVGTCFGFSIEVEALPLF 615


>gi|262166495|ref|ZP_06034232.1| BarA sensory histidine kinase [Vibrio mimicus VM223]
 gi|262026211|gb|EEY44879.1| BarA sensory histidine kinase [Vibrio mimicus VM223]
          Length = 927

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 87/342 (25%), Positives = 156/342 (45%), Gaps = 19/342 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +F   +   + +P T        ++++      L + +   +        K    +++ +
Sbjct: 191 IFASRLMHDVTRPITHM-----KNMVDRIRRGHLDVRIEGKMHGELDSLKKGINAMAVSL 245

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
               +           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 246 SEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTP 305

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+  +   +          +Y   I++S N +L I+ND+LD SK+E+GK+ L  
Sbjct: 306 LNGVIGFTRQMLKTQLTN----SQTDYLQTIEKSANNLLTIINDILDFSKLEAGKLALEN 361

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P    E + E ++L    A+EK + I       IPR ++ D   ++Q+  N++ N+I F
Sbjct: 362 IPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKF 421

Query: 719 TPSGGQIIISTTHT----SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           T  G  I +S           ++   VRDTG+G++  +  +  + F Q   S   R  GT
Sbjct: 422 TERG-NIDVSVEMRALRDDVIDLQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGT 480

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           GLGL + + +V    G+  + S   +G+       L+ T  P
Sbjct: 481 GLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTLRLHTTELP 522


>gi|16127201|ref|NP_421765.1| sensory box histidine kinase/response regulator [Caulobacter
           crescentus CB15]
 gi|221236002|ref|YP_002518439.1| GAF/PAS-family sensor histidine kinase [Caulobacter crescentus
           NA1000]
 gi|13424601|gb|AAK24933.1| sensory box histidine kinase/response regulator [Caulobacter
           crescentus CB15]
 gi|220965175|gb|ACL96531.1| GAF/PAS-family sensor histidine kinase [Caulobacter crescentus
           NA1000]
          Length = 713

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 116/570 (20%), Positives = 207/570 (36%), Gaps = 38/570 (6%)

Query: 279 NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYS 337
           +L    K      L   +      L      +      +          + PI    +  
Sbjct: 10  DLGAAIKIMAVPELDQEAARIRALLDLGILDTPPEQEFDDIVQAARDACQAPIAVLSLID 69

Query: 338 HGNLFYANPSFLLLTKYKSVDDI-EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA 396
               ++     +   + +        A   S  L  P    +   K   L        + 
Sbjct: 70  SDRQWFKARVGIEACETERDASFCAHAVAASKTLSIPDARLDARFKDNRLVNGPEQIRSY 129

Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK---------- 446
                 +        A+  I     +    +              I  R           
Sbjct: 130 LG-APIMTREGVAIGAVAVIDQRPRDWSSGDTQALERLARIAARLIEMRARCELADAQGQ 188

Query: 447 ----MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP-----F 497
               +  E +Q  +I  A  +G+ + +R  IIL  N A + L G   + +L K      +
Sbjct: 189 QLLNLAAEGVQFRTIFAAMREGVVLQDRSSIILRHNPAAAALLGLTHDQLLGKSSVDDDW 248

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---- 553
            +      P  +    + +        L  +     ++  L  L +    +         
Sbjct: 249 RIVDAAGAPLPVEAQPSMVCLATGEPVLNFVLGVHLRDGALRWLSVNSLPIFDKIGEPPN 308

Query: 554 -YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
               +  D++E ++ + +L  A ++AE+ S  KS F+A VSHEIRTPL  +I  +  ++ 
Sbjct: 309 LTVTSFIDVTELRERETELRDALELAERASRVKSQFVANVSHEIRTPLNGVIALASALRQ 368

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
                    R  E    I  SG  +  I++ LLD++KIE+ +M L      L++ V  + 
Sbjct: 369 SAL----TDRQREMVEIIVESGTTLESILSALLDLAKIEAERMELEIVSFGLEDLVRSST 424

Query: 673 SLVQLYANEKRILIRTS-FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
            L ++ A+ K +    S  A    R   D + ++QI  N+L+NAI FT +G +I +S T 
Sbjct: 425 DLFKIKADNKGLGFDVSVIAPPGARYRGDAQKIRQILWNLLANAIKFTDAG-EIAVSVTV 483

Query: 732 TSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
              +     +++ VRDTGVG++        +PF Q   S   R  GTGLGL + +A+   
Sbjct: 484 EGADPAAQTLLIEVRDTGVGLSPEMEHVLFEPFIQGDASATRRFGGTGLGLTICRALARM 543

Query: 788 NMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
             G     +   +G++  +  P+  T+ P 
Sbjct: 544 MGGDIEALARAERGSVFRVHVPVS-TAEPE 572



 Score = 47.7 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 42/395 (10%), Positives = 99/395 (25%), Gaps = 36/395 (9%)

Query: 95  LKEISEELPKTIGNYAFKMIGM-RLCDVSDILHIDPNNHIGDL------LKRQNTWYGKT 147
           +   +      +G    +++G   + D   I+         +       L          
Sbjct: 220 ILRHNPAAAALLGLTHDQLLGKSSVDDDWRIVDAAGAPLPVEAQPSMVCLATGEPVLNFV 279

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFS--GFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
               +    L   + + +LPI+ +  E        F  V   R           L ++ S
Sbjct: 280 LGVHLRDGALR-WLSVNSLPIFDKIGEPPNLTVTSFIDVTELRERETELRDALELAERAS 338

Query: 206 HLHEIKKGHSSVE--KEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
            +      + S E       + +  S      + ++   + E        L++    LL 
Sbjct: 339 RVKSQFVANVSHEIRTPLNGVIALASALRQSALTDRQREMVEIIVESGTTLESILSALLD 398

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
             +      E        +   +      +  +                A +        
Sbjct: 399 LAKIEAERMELEIVSFGLEDLVRSSTDLFKIKADNKGLGFDVSVIAPPGARYRGDAQKIR 458

Query: 324 ETV-DKCPIPFFVYSHGNL------FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
           + + +           G +        A+P+   L        + ++  +  +L  P + 
Sbjct: 459 QILWNLLANAIKFTDAGEIAVSVTVEGADPAAQTLLIEVRDTGVGLSPEMEHVLFEPFIQ 518

Query: 377 DNNAIKPVM------------LYRSDRTCIAASAR-----LHTIQWNRENSLAMTFIPFE 419
            + +                 L R     I A AR     +  +      +     +  E
Sbjct: 519 GDASATRRFGGTGLGLTICRALARMMGGDIEALARAERGSVFRVHVPVSTAEPEASVAVE 578

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
                   M    +E    + R+ +  +E    +L
Sbjct: 579 SEADLATAMTILLVEDNPNNRRVVELLLEPTGAEL 613


>gi|42523783|ref|NP_969163.1| hypothetical protein Bd2335 [Bdellovibrio bacteriovorus HD100]
 gi|39575990|emb|CAE80156.1| unnamed protein product [Bdellovibrio bacteriovorus HD100]
          Length = 713

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 72/251 (28%), Positives = 130/251 (51%), Gaps = 6/251 (2%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I E  + + +L  AK  AE+ S  KS+FLAR+SHEIRTPL +++G  E+++  +      
Sbjct: 301 IRELNETQGQLKSAKDQAEEASRAKSEFLARMSHEIRTPLNSVLGMLELLRETQLSK--- 357

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
                Y      +G  +  ++NDLLD SKIE+  + +     ++   V     ++Q+ A 
Sbjct: 358 -DQERYLTLFSHAGENLKALINDLLDFSKIEAKALTVENVSYNIHSTVRSVFDILQIKAE 416

Query: 681 EKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVI 738
           E+ +      + ++P +   D   ++Q+  N++ NA+ FT  G  ++ +  T  + E+++
Sbjct: 417 EQGLHFELHISKDVPPLQWGDPTRLRQVLFNLIGNALKFTNEGSVKVKLELTKDAPEQLL 476

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           + V+DTG+G+      K    F Q   +   +  GTGLGL ++K +V+   G   + S  
Sbjct: 477 IEVQDTGIGIPRERQSKLFSSFAQGDPTIARKYGGTGLGLVISKNLVEIMGGTMEMKSLA 536

Query: 799 AKGTLIEIIFP 809
            +GT  +I+ P
Sbjct: 537 GRGTTFKILLP 547


>gi|257454302|ref|ZP_05619568.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Enhydrobacter
           aerosaccus SK60]
 gi|257448319|gb|EEV23296.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Enhydrobacter
           aerosaccus SK60]
          Length = 555

 Score =  291 bits (745), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 77/261 (29%), Positives = 124/261 (47%), Gaps = 6/261 (2%)

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            + D++    +  KL   +  AE+    K+ FLA +SHEIRTP+  IIG  E+++     
Sbjct: 151 VLADLAAMVSDTLKLRQQRYQAERADEVKTAFLANMSHEIRTPMNGIIGILELLEQTPLD 210

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
                +   Y   I  S   +L IVND+LD+SK+ESGK+     PV L +   +      
Sbjct: 211 T----QQQHYIKSIKTSNEHLLTIVNDILDLSKVESGKIRFESIPVDLAQLCQDVYQCFL 266

Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-SN 734
             A +  + +   + +N+P+ +  D   V+QI +N+++NAI FTP  G++ I   +    
Sbjct: 267 ATAKDNSVELTFDYPDNLPKYVNTDPVRVRQILINLVNNAIKFTPKQGKVTIQAMNGGDK 326

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
            ++   V DTGVG+    L      + Q          GTGLGL + KA+ +   G   +
Sbjct: 327 HQIKFNVIDTGVGIKPESLAVIFDAYNQADKFTHRLYGGTGLGLSVCKALAEGMGGTIKV 386

Query: 795 FSTPAKGTLIEIIFPLYDTSH 815
            S   KG+   +  P+  T  
Sbjct: 387 TSEKNKGSTFTLSLPMIATDE 407


>gi|116250447|ref|YP_766285.1| two component sensor histidine kinase transcriptional regulatory
           protein [Rhizobium leguminosarum bv. viciae 3841]
 gi|115255095|emb|CAK06169.1| putative two component sensor histidine kinase transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 768

 Score =  291 bits (745), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 68/381 (17%), Positives = 153/381 (40%), Gaps = 26/381 (6%)

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
           +E E ++  +++  T D + +I+  G I + N A   +FGY  ++ + K   + + +   
Sbjct: 384 LESERVRFGALVRGTPDAVVVIDERGTIKNFNPAAESMFGYSPQETIGKNIKMLMPEPYH 443

Query: 507 SVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKL--PFSSCYSLTMHDIS 562
           S  + YL         + +   ++  G  K   +  + + I  +    +  +   + DIS
Sbjct: 444 SEHDGYLAHYRQTGEERIIGTTRMVSGRRKNGIVFPIDVSISAVVTGHTKTFVGIVRDIS 503

Query: 563 EWKQEKN-------KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
           E  +++        +L       E+ +    +F    SH+++ PL  +   S  +     
Sbjct: 504 ERVRQEERMKTTLSQLEAYTAELERSNHDLDEFAYIASHDLKEPLRGLHNHSRFLLEDYE 563

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
             L         N + R    +  +VN+LL  S++  G+  L  +   +   V + ++ +
Sbjct: 564 DKLDADGVRR-LNRLVRLSQRMEKLVNELLYFSRL--GRQQLAVKRTDIGLIVKDVVATM 620

Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS-- 733
           +L   E+   +       +P ++ D   + ++  N+++NA+ +      + +S  +    
Sbjct: 621 ELLLEERHAKVI--IDGRLPEVVCDAPRLTEVFRNLITNAVKYNDKPAPL-VSIGYLDRF 677

Query: 734 ---NEEV---ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
              +  V   +  V+D G G+     E   + F ++  SQ    +GTG GL   + ++  
Sbjct: 678 VGKDGTVARNVFFVKDNGKGIPQEFHEDIFRIFKRLEKSQDSD-DGTGAGLTFVRKIIAR 736

Query: 788 NMGKFYIFSTPAKGTLIEIIF 808
           + G  ++ S    GT      
Sbjct: 737 HNGDIWLESEVGTGTTFYFTL 757



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 38/367 (10%), Positives = 92/367 (25%), Gaps = 36/367 (9%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD-ILHIDPNNHIGDLLKRQNTWYGKT 147
           ID  G +K  +       G    + IG  +  +     H + + ++    +        T
Sbjct: 405 IDERGTIKNFNPAAESMFGYSPQETIGKNIKMLMPEPYHSEHDGYLAHYRQTGEERIIGT 464

Query: 148 TL----WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK-RLDK 202
           T         G    + + ++A+ +    + F G     IV             K  L +
Sbjct: 465 TRMVSGRRKNGIVFPIDVSISAV-VTGHTKTFVG-----IVRDISERVRQEERMKTTLSQ 518

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
             ++  E+++ +  +++  Y        P      +    L +Y    D         L+
Sbjct: 519 LEAYTAELERSNHDLDEFAYIASHDLKEPLRGLHNHSRFLLEDYEDKLDADGVRRLNRLV 578

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
              +       +    +             Q  + +  +          +      E   
Sbjct: 579 RLSQRMEKLVNELLYFSRLGR---------QQLAVKRTDIGLIVKDVVATMELLLEERHA 629

Query: 323 PETVD-KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
              +D + P            + N     +        +   G L   +      D    
Sbjct: 630 KVIIDGRLPEVVCDAPRLTEVFRNLITNAVKYNDKPAPLVSIGYLDRFVGK----DGTVA 685

Query: 382 KPVMLYRSDRTCIAASARLHTIQW----------NRENSLAMTFIPFEKANQFPENMPQN 431
           + V   + +   I         +           +      +TF+    A    +   ++
Sbjct: 686 RNVFFVKDNGKGIPQEFHEDIFRIFKRLEKSQDSDDGTGAGLTFVRKIIARHNGDIWLES 745

Query: 432 GIEPEDV 438
            +     
Sbjct: 746 EVGTGTT 752


>gi|77465058|ref|YP_354561.1| DMSO/TMAO-sensor hybrid histidine kinase [Rhodobacter sphaeroides
           2.4.1]
 gi|77389476|gb|ABA80660.1| DMSO/TMAO-sensor hybrid histidine kinase [Rhodobacter sphaeroides
           2.4.1]
          Length = 813

 Score =  291 bits (745), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 119/544 (21%), Positives = 205/544 (37%), Gaps = 34/544 (6%)

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
            E          +     Y  + +    E     +     S S            +V   
Sbjct: 16  AELAPVGVSAAERSALADYLESSETLLTERVVAYASTR--SYSHLVSTLPEAWRSSVQGL 73

Query: 330 PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389
                +        A   +             I  GL   L    +S    I     YR 
Sbjct: 74  TDSVILMLDHQSAEAAIDYDADIGTDPSTAYGIEAGLRHRL--RGISLETFIGAFKGYRD 131

Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449
               + A AR+          L   F    +         + G   +        R +  
Sbjct: 132 VYLNVTAEARVPAAMREGWLRLLRGFFDRAEIGICAHWSGELGTL-DHDQLLSVNRALVN 190

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
           E  +  +I E+ ++ + +++  G I + N A ++LF          P +V+         
Sbjct: 191 EKNKYLTIFESMNNPVLLVDDGGRIENMNFAAARLFLQDA-----LPGSVYYGPEANLRF 245

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWK 565
                  L     +      L    E       I  +++   S       +T HD++E +
Sbjct: 246 ADLAGFDLEAVKLRGEAGDVLTCIGER---WYSITAQEMLDVSRKFVGIVVTFHDVTEAR 302

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           +        ++ AE  +  K+DFLA +SHEIRTP+ +I G +E++K          R   
Sbjct: 303 RA-------REQAEALARAKTDFLATMSHEIRTPIHSIGGVTELLKQSELAS----RDRG 351

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK--- 682
           Y + I+RS  ++  IV+D+LD ++IESG + L     S+D+ + +   ++Q     K   
Sbjct: 352 YVDAIERSTEVLASIVSDVLDYARIESGLVELEQVDFSIDQILDDVARMMQPLVRRKPQL 411

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           RI+I  +   ++P +L D   ++QI +N+ SNA+ FTP G  +I +            V 
Sbjct: 412 RIVIERT---DLPPVLGDAGKLRQILINLTSNAVKFTPEGTVVIGAERLAGGHRFRFTVS 468

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG G+   +LE+  KP+ Q  +S   R  GTGLGL + + +     G+  + STP  G+
Sbjct: 469 DTGPGIAAEKLEEIFKPYIQSDSSISRRHGGTGLGLAICRRLAGHLGGRLDVRSTPGFGS 528

Query: 803 LIEI 806
              +
Sbjct: 529 RFTL 532


>gi|308126279|ref|ZP_05908879.2| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037]
 gi|308107066|gb|EFO44606.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037]
          Length = 882

 Score =  291 bits (745), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 83/266 (31%), Positives = 135/266 (50%), Gaps = 16/266 (6%)

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
               + E +++ +++ HAK+ A   +  KS FLA +SHEIRTPL  I+G +E++      
Sbjct: 355 VNRVVEEKQRQTHEILHAKESAVAANRAKSVFLANMSHEIRTPLNGIMGMTEILSQSELS 414

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
           P       E  + ID S + +L ++ND+LD+SKIESG++ L      + E V +++ L Q
Sbjct: 415 P----HQQEVVDDIDTSSHTLLALLNDILDLSKIESGRLELSLVEADIREVVYQSVILFQ 470

Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS-- 733
             A  K++ +  S   NIP R++ D   +KQI  N++SNA+ FT  G  I +  ++    
Sbjct: 471 SKATSKQLELDISLDENIPARVMVDDHRIKQIITNLVSNAVKFTEQG-YISVDVSYEEAL 529

Query: 734 ---NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
                 +   ++D+G+G+   +L    +PF Q       +  GTGLGL + + +V    G
Sbjct: 530 EQGRGSLTFLIKDSGIGIERDKLATIFEPFTQEDEGVSRQFGGTGLGLAICRQLVSMMGG 589

Query: 791 KFYIFSTPAKGTLIEII-----FPLY 811
           K    ST   GT           PL+
Sbjct: 590 KLVATSTKGVGTCFGFSIEVEALPLF 615


>gi|239907809|ref|YP_002954550.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239797675|dbj|BAH76664.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 660

 Score =  291 bits (745), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 94/507 (18%), Positives = 193/507 (38%), Gaps = 32/507 (6%)

Query: 315 FDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
            +       + +   P+    + + G + + N     LT +              L D P
Sbjct: 8   QEALAANCEQIIQLAPVSIMHIDAEGVITFVND--WHLTNFARGKRDRDFFLGRKLKDMP 65

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
            ++ ++    +         +   A ++    +   S            +         I
Sbjct: 66  GITSSSMGGEID-RILSGETVHLEA-VYVDACSGGQSAYQNIRGIPVM-ESGRVSGGIII 122

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
             +     + ++ +        ++L+AT D I + + +G IL  N   ++  G  V+ ++
Sbjct: 123 REDVTKIVLAQQLLAENQAIFKALLDATLDSIILSDVDGYILVLNEEAARRRGQTVDALM 182

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553
                  +     +     L E ++ +     E+              ++ I  +  +S 
Sbjct: 183 GASLYSHMPLEQAATRRDKLREAVARNAIVGYEERY-------GETCYQVSICPIADASG 235

Query: 554 YSLTM----HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
             L +     DI+  K+ +++L   +++A   S  KS FL  ++HE+RTPL  I+G +++
Sbjct: 236 QVLYVASYSRDITTLKETEHQLRRERELAFSSSQAKSQFLGNITHELRTPLNGIMGAAQL 295

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
              +  G        E    ++ SG  +L IVN++L+++ I++  +       S+ E + 
Sbjct: 296 ALQEAAGG----EERELWEIVEDSGKRLLSIVNNVLELADIDAAAIEPVLATFSMGEVLG 351

Query: 670 EAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
                  + A  + +   T     IP  ++ D+  ++QI  N++ NA+  T   G I + 
Sbjct: 352 SLSRSYGVRAKVRDVQFLTRLDPRIPERLVGDVFRLRQILSNLVDNALKCT-KNGTIEVR 410

Query: 729 TTHTSNEEVILR---------VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
                +E +            VRDTG+G+      K  + F    +    R  G GLGL 
Sbjct: 411 AKLIRSERLKFSAQYRTVLFMVRDTGIGIAKELQGKIFEDFELAEHYLTKRVSGAGLGLS 470

Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEI 806
           +AK +V    G+ ++ S P KG+    
Sbjct: 471 IAKHLVQLLGGRIWVKSAPGKGSTFYF 497



 Score = 40.4 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 48/392 (12%), Positives = 96/392 (24%), Gaps = 17/392 (4%)

Query: 89  IDAHGYLKEISEE----LPKTIGNYAFK-MIGMRLCDVSDILHIDPNNHIGDLLKRQNTW 143
           IDA G +  +++       +  G       +G +L D+  I        I  +L    T 
Sbjct: 29  IDAEGVITFVNDWHLTNFAR--GKRDRDFFLGRKLKDMPGITSSSMGGEIDRIL-SGETV 85

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
           + +               ++  +P+   +   SG  G  I          + L       
Sbjct: 86  HLEAVYVDACSGGQSAYQNIRGIPVM-ESGRVSG--GIIIREDVTKIVLAQQLLAENQAI 142

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
           F  L +       +      I          R    V +L     +    L+        
Sbjct: 143 FKALLDATLDSIILSDVDGYILVLNE-EAARRRGQTVDALMGASLYSHMPLEQAATRRDK 201

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
             E+        +     +   +     + + S +     S+    +     +       
Sbjct: 202 LREAVARNAIVGYEERYGETCYQVSICPIADASGQVLYVASYSRDITTLKETEHQLRRER 261

Query: 324 ETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
           E           +              +     +   E AGG    L          +  
Sbjct: 262 ELAFSSSQAKSQFLGNITHELRTPLNGIMGAAQLALQEAAGGEERELWEIVEDSGKRL-- 319

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
             L   +     A      I+           +     +       ++      +D RI 
Sbjct: 320 --LSIVNNVLELADIDAAAIEPVLATFSMGEVLGSLSRSYGVRAKVRDVQFLTRLDPRIP 377

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
           +R +  +V +L  IL    D      + G I 
Sbjct: 378 ER-LVGDVFRLRQILSNLVDNALKCTKNGTIE 408


>gi|291570932|dbj|BAI93204.1| two-component hybrid sensor and regulator [Arthrospira platensis
           NIES-39]
          Length = 1057

 Score =  291 bits (745), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 76/266 (28%), Positives = 134/266 (50%), Gaps = 12/266 (4%)

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
           + +   DI+E  +   +L+       + +  K +FLA +SHE++TPLTA++G S ++K++
Sbjct: 319 WLIIAQDITEQYRVAQELTAKNADLIQLNRLKDEFLACISHELKTPLTAVLGLSSLLKDK 378

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
             G L + R  +YA  I +SG  ++ +VND+LD+++IE+G++ L  E V++      A+ 
Sbjct: 379 ALGELSD-RQAKYAKLIHQSGRHLMMVVNDILDLTRIETGQLELTPEGVNIKTVCDRALE 437

Query: 674 LVQLYANEKRIL----------IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
            V     +  I                   +  I AD   ++Q+ +N++SNA  FTP GG
Sbjct: 438 AVLHLHQQGDIKDSQSSLGSQKFSIEIEPGLETIEADELRLRQMLINLISNAFKFTPDGG 497

Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
            + +      +  V+  V DTG+G+   +     + F Q+ +    + EGTGLGL L + 
Sbjct: 498 YMGLRVNRWED-WVVFTVWDTGIGIPEQKQHLIFEKFQQLESPLNRQFEGTGLGLVLCQR 556

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFP 809
           +   + G     S   KGT   ++ P
Sbjct: 557 LARLHGGDISFISHQRKGTEFTLLLP 582


>gi|239904878|ref|YP_002951616.1| two-component sensor histidine kinase [Desulfovibrio magneticus
           RS-1]
 gi|239794741|dbj|BAH73730.1| two-component sensor histidine kinase [Desulfovibrio magneticus
           RS-1]
          Length = 404

 Score =  291 bits (745), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 86/391 (21%), Positives = 154/391 (39%), Gaps = 24/391 (6%)

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
              +       +    +      ++ +IL+  +D + ++  +  ILS N    + F   V
Sbjct: 22  FQELRQTIEALKDANTQSAQRRREIAAILDGITDIMMVLTSDLRILSVNHVFRQTFP-DV 80

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
                                   +   +         I     K  +   +   I +  
Sbjct: 81  PRPEGMFCHQIFRGEDVPCPGCPASASFAAGDICRETAIFKIGGKNVQFEMVASPINRPD 140

Query: 550 FSSCYSLTM-HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
               + L    D+S  K+ + K   A+K+A             V+HE+  PLTAI GF+E
Sbjct: 141 APDRHILVFKRDVSREKEYQAKFYQAEKMATIGM-----LATGVAHEVNNPLTAIFGFAE 195

Query: 609 VI------KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
            +        ++  P       +Y   I R      DIV  LL  S+    +  + F  V
Sbjct: 196 GLRRRLPALKEKVDPRVMEDVEDYVATILRECRRCQDIVTTLLTFSR----QKTVSFSAV 251

Query: 663 SLDEAVSEAISLVQLYANEKR---ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719
           SL+  V++ + L++ +  ++    I +R   + N+P +  D   +KQ+ LN+L NA+   
Sbjct: 252 SLNAVVNDTLKLLRSHLKQRNQAKITVRVDLSENLPMVHGDEHQIKQVMLNLLVNAMDAI 311

Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
              G+III+T  +S   V L V D+G G+    ++K  +PF          G+G G+GL 
Sbjct: 312 TGPGRIIITTYQSSKGAVCLSVEDSGCGVPPENVDKLFEPFFTTK----RSGKGIGIGLS 367

Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
              ++V  + G   + STP +G    +  P+
Sbjct: 368 TCMSIVKKHQGDITLKSTPGQGATFTVSLPV 398


>gi|229060323|ref|ZP_04197689.1| hypothetical protein bcere0026_24230 [Bacillus cereus AH603]
 gi|228718913|gb|EEL70530.1| hypothetical protein bcere0026_24230 [Bacillus cereus AH603]
          Length = 579

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 86/501 (17%), Positives = 172/501 (34%), Gaps = 41/501 (8%)

Query: 314 YFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                E      +   P+    +  +G+    N    ++T Y + + I     L  L   
Sbjct: 91  LLSRKEEELHTILQNMPVMVDALDYNGDFVLWNRECEIVTGYTAEEIIGNPNALRLLYPD 150

Query: 373 PKLSDNNAIKPVM----LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
                    K +         +      +  + TI W+                      
Sbjct: 151 HNYRYQIQNKFLTHGKNFRDWEMRLTCKNGEIKTIMWSN-----------ISEQFPVTGF 199

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
               +  +    +  + +++ +  +L  I +A  D   +   +G I+         F  P
Sbjct: 200 SYWAVGVDITHLKAIEEQLKQQTSELELIFKALPDLCFLTEYDGTIIDYKAGSPTKFYVP 259

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            E  + K F   L           + ++        +E           +         L
Sbjct: 260 AEAFMGKKFYEILPSPVAQQFQEAIRQLKEEGKNVIVEYPLTI---NGSIDFFEARCLPL 316

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                  + + DI+E K+ +  L+ +  +A           A V+HE+R PLT I GF +
Sbjct: 317 LQDK-IMIIVRDITERKKAEELLNKSDTLA-----AIGQLAAGVAHEVRNPLTVIKGFIQ 370

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
                    +      +Y + +      +  I+ + L I+K +     ++ E  ++ +  
Sbjct: 371 ------LFQINKEDQEKYFDLMLSEIERIESILQEFLSIAKTD----EINTEKKNIYQIF 420

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
              +SL+   A    I +     +    I      +KQ+ +NIL N+I    +GG+I I 
Sbjct: 421 KNVVSLINTKAIMTNIQVELFTDSKEIIIECSENQLKQVFINILQNSIEAMLNGGEISIH 480

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                   V++ V D G+G+    +++  +PF         + +GTG+GL L+  +++++
Sbjct: 481 IKEIHKNGVVISVIDEGIGIPEERIKRLGEPFY------STKEKGTGIGLMLSYKIIESH 534

Query: 789 MGKFYIFSTPAKGTLIEIIFP 809
            G   I S    GT + I  P
Sbjct: 535 QGTISIMSEVGVGTTVTIYLP 555


>gi|328543171|ref|YP_004303280.1| Sensor kinase [polymorphum gilvum SL003B-26A1]
 gi|326412917|gb|ADZ69980.1| Sensor kinase [Polymorphum gilvum SL003B-26A1]
          Length = 849

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 99/661 (14%), Positives = 213/661 (32%), Gaps = 47/661 (7%)

Query: 175 FSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL 234
           F+G  G          +   A       + + + + +       +    +   ++     
Sbjct: 67  FAGAIGLLRFSSRTGGSSLGAAFVDSLDEGALVTDTEGRLIYANQAYASLTGAETAAEVR 126

Query: 235 RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294
            ++   SS  +       + +  +      EE  LP   +        Y        +  
Sbjct: 127 TVERVFSSDPDAADAIFRLSQAMRESRRAQEEVRLPYPLNGSDGGARWYRVSVRPLVIPR 186

Query: 295 NSKESFEYL------SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPS 347
               S   L            +      +        +D  P  FF     G L Y N +
Sbjct: 187 REGGSGRMLTVWQLADITRDRTEQESSFQELQRVINFLDHAPAGFFSCDGRGRLVYLNAT 246

Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
                 Y              L  +  +  + A     +        + +  L  +  N 
Sbjct: 247 LADWLGYDLAQ-----FQAGELDLSDIIRGDGAELVRSVRGQAGEVKSETLDLDLVTRNG 301

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
              L +  +         +      +             +    ++       T   IA 
Sbjct: 302 -RGLPVRLLHRVPFGADGKPGDSRTLVLNRSRGEEVSEALRAAEVRFARFFNNTPIAIAS 360

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
           ++ EG +L TN    +LFG             F+ +      +  L              
Sbjct: 361 LDAEGRVLRTNAPFLRLFGPVDLSGDGPKLEGFVAEQGREEFSKALAAAAKGYGEIAPVD 420

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM--HDISEWKQEKNKLSHAKKIAEKESSHK 585
           + L +  + +  +  +   +       +  +   + ++ +  + + + ++K+        
Sbjct: 421 VPLANASDGRSATFYVSAVQDGEGDGEAAIVYALETTQQRALEAQFAQSQKM-----QAI 475

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
                 V+H+    LTAIIGFS+++         +P + +  N I ++ N    +V  LL
Sbjct: 476 GQLAGGVAHDFNNVLTAIIGFSDLLLASHRPT--DPSFQDIMN-IKQNANRAAGLVRQLL 532

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
             S+    +  L  + ++L++ +++ +S++      +++ ++     ++  ++ADL  ++
Sbjct: 533 AFSR----RQTLRPQQLALNDVLAD-LSILLDRLLGEKVELKVIHGRDLWPVMADLNQLE 587

Query: 706 QIALNILSNAIHFTPSGGQIIISTT---------------HTSNEEVILRVRDTGVGMTN 750
           Q+ +N+  NA      GG++ I T+                   E  ++ V DTG GM  
Sbjct: 588 QVIVNLAVNAGDAMADGGRLTIRTSNVSAAESTRFENTRGMPPGEYTLIEVEDTGHGMPP 647

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             +EK  +PF     S +  G+GTGLGL     +V    G  +  S    GT   +  P 
Sbjct: 648 EIMEKIFEPFF----STKEVGKGTGLGLSTVYGIVKQTGGYIFCSSEVGVGTTFRLFLPR 703

Query: 811 Y 811
           +
Sbjct: 704 H 704



 Score = 80.8 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 46/414 (11%), Positives = 97/414 (23%), Gaps = 29/414 (7%)

Query: 60  ESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLC 119
              S T        FV       +      D  G L   ++      G      +   + 
Sbjct: 75  RFSSRTGGSSLGAAFVDSLDEGAL----VTDTEGRLIYANQAYASLTGAETAAEV-RTVE 129

Query: 120 DV--SDILHIDPNNHIGDLL-KRQNTWYGKTTLWPIEGTNLY-VPIDLAALPI---YSRN 172
            V  SD    D    +   + + +         +P+ G++       ++  P+       
Sbjct: 130 RVFSSDPDAADAIFRLSQAMRESRRAQEEVRLPYPLNGSDGGARWYRVSVRPLVIPRREG 189

Query: 173 REFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP 232
                   + +  + R   +  +  + L +  + L     G  S +     ++   +   
Sbjct: 190 GSGRMLTVWQLADITRDRTEQESSFQELQRVINFLDHAPAGFFSCDGRGRLVYLNATLAD 249

Query: 233 HLRMK----NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288
            L                    D             E  S     D  T N      +  
Sbjct: 250 WLGYDLAQFQAGELDLSDIIRGDGAELVRSVRGQAGEVKSETLDLDLVTRNGRGLPVRLL 309

Query: 289 FGTLQNNSK----ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFY 343
                             L+      +S      E       +  PI    + + G +  
Sbjct: 310 HRVPFGADGKPGDSRTLVLNRSRGEEVSEALRAAEVRFARFFNNTPIAIASLDAEGRVLR 369

Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403
            N  FL L       D+   G       A +  +  +       +           L   
Sbjct: 370 TNAPFLRLFG---PVDLSGDGPKLEGFVAEQGREEFSKALAAAAKGYGEIAPVDVPLANA 426

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
             +  ++   TF      +   +         E    R  + +   +  ++ +I
Sbjct: 427 S-DGRSA---TFYVSAVQDGEGDGEAAIVYALETTQQRALEAQF-AQSQKMQAI 475



 Score = 46.2 bits (108), Expect = 0.022,   Method: Composition-based stats.
 Identities = 31/316 (9%), Positives = 87/316 (27%), Gaps = 15/316 (4%)

Query: 79  IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK 138
                 F ++ D  G L  ++  L   +G    +       D+SDI+  D    +  +  
Sbjct: 225 DHAPAGF-FSCDGRGRLVYLNATLADWLGYDLAQ-FQAGELDLSDIIRGDGAELVRSVRG 282

Query: 139 RQNTWYGKTTLWPIEGTNLY-VPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG 197
           +      +T    +   N   +P+ L     +  + +  G     +++ +R +    AL 
Sbjct: 283 QAGEVKSETLDLDLVTRNGRGLPVRLLHRVPFGADGK-PGDSRTLVLNRSRGEEVSEAL- 340

Query: 198 KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP----PPHLRMKNKVSSLTEYYAHKDDV 253
           +  + +F+          +    +  +    +P       + +      L  + A +   
Sbjct: 341 RAAEVRFARFFNNTPIAIASLDAEGRVLRTNAPFLRLFGPVDLSGDGPKLEGFVAEQGRE 400

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
             ++           +   +       +  +   Y   +Q+   +    + +    +   
Sbjct: 401 EFSKALAAAAKGYGEIAPVDVPLANASDGRSATFYVSAVQDGEGDGEAAIVYALETTQQR 460

Query: 314 YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
             +     + +            + G     N     +  +  +  +             
Sbjct: 461 ALEAQFAQSQKM-----QAIGQLAGGVAHDFNNVLTAIIGFSDL-LLASHRPTDPSFQDI 514

Query: 374 KLSDNNAIKPVMLYRS 389
                NA +   L R 
Sbjct: 515 MNIKQNANRAAGLVRQ 530


>gi|241666772|ref|YP_002984856.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240862229|gb|ACS59894.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 1000

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 93/744 (12%), Positives = 232/744 (31%), Gaps = 42/744 (5%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTL 149
             G L   +++L         +++      ++    +          LK    +  +T  
Sbjct: 272 PEGQLNGANQQLLDYFQLPLEEVVNWATNGITHPDDLQHCVETFTASLKTGEPYDFETRF 331

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
              +G   +    +   P+   N      R +G++             +  + +   +  
Sbjct: 332 RRHDGE--FRWFQVRGHPVKDDNGGIV--RWYGLLTDIDDGRRAVEALREREIELQLIVN 387

Query: 210 IKKGHSSVEKEKYDIFSQQS----PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
              G   V +    + S          +   +++     +     D      ++    + 
Sbjct: 388 SIPGLIIVLRPDGAVESVNDQSLRYFGYDFNEHQKWKTNDIIHPDDRDRGVARFAEAVAA 447

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL----SHRNHPSLSAYFDEGENL 321
             S    E     +      +     +++       +        +           E  
Sbjct: 448 GQSYEVVERLRRHDGVYRWFQVRGTPVRDYEGLVVRWYFLLNDIDDRKHAEVALANSERE 507

Query: 322 TPETVDKCP-IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
               V+  P +       G L  +N   L        +            +     D+  
Sbjct: 508 FRHIVNMVPGMIILSQPDGTLDGSNQQLLDYFGISLDEV------QDWSTNGITHPDDVQ 561

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
           +       + ++           + +               +   + +   G+  +  D 
Sbjct: 562 VNIDTFLGALKSGNPYD-YQSRYRRHDGVFRWFQVRGQPLRDAEGKIVRWYGLLTDIDDR 620

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI-LRKPFTV 499
           +  + ++      L +       G    + E   L  +    ++  +  +++      T 
Sbjct: 621 KQAEDELRRSQALLVAGQRLIRTGTFSWHVETDELILSDEWLRILEFEKDEVVTFDRITE 680

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS-LTM 558
            +  +  ++    +  +   D     E   L    + K + +   +      +      +
Sbjct: 681 RIHPDDVALFAGKIGAVREGDEDSEYEVRVLARNGDIKYVRVIGEVIIHRNGNRECLGAI 740

Query: 559 HDISEWKQEKNKLSHAKKIAEKESS--HKSDFLARVSHEIRTPLTAIIGFSE-VIKNQRF 615
            D+++ +  +      +    + +S        A ++HE+  PL+ II  +   ++    
Sbjct: 741 QDVTQRRLTEEARDRLRTELARVTSILSLGQMSAAIAHEVNQPLSGIITNANTCLRMLAA 800

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
            P      +E A    R GN   +++  L    +    K N+ FE V ++EAVSE ++L 
Sbjct: 801 TPPDIETALETARRTIRDGNRATEVIARL----RALFSKRNIEFEDVDINEAVSEVVALS 856

Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ-----IIISTT 730
                   + IRT FA ++P +  D   ++Q+  N+L NAI    SG +     + I T 
Sbjct: 857 AGDQRRNGVAIRTHFATSLPPVNGDRVQLQQVINNLLRNAIDAV-SGVKDRLRLVEIRTQ 915

Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
              + ++ + V D G+G+      +  + F    N+      G G+GL + +++++++ G
Sbjct: 916 LGGDGQISVAVSDNGIGLDPDGGTRIFEAFYTTKNN------GMGIGLSVCRSIIESHGG 969

Query: 791 KFYIFSTPAKGTLIEIIFPLYDTS 814
           + +       G  +    P  + +
Sbjct: 970 RLWAEPNQGPGVTMHFSVPSAEEA 993



 Score =  138 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 52/508 (10%), Positives = 132/508 (25%), Gaps = 28/508 (5%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYG 145
           W +   G +  ++    +  G         R  D      +     H+  +   +     
Sbjct: 17  WTMLEDGQVDFVNRSWVEFTGLRPASGESWRWEDAVHPADVGAVTAHLQSVRHAETQGTI 76

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +  L    G   +  I  A  P+              +          R   +     F 
Sbjct: 77  EARLRNAAGEFHHFLIQWA--PLEDAPHGVV--NWCAVATNIEPVVQKRERSQAALD-FQ 131

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQS---PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
            + +      +V     ++            L + +          H DD+ +T +  + 
Sbjct: 132 LVVDSIPIPVAVTTPAGEVEGLNQLTLSYFGLSLSDLKDWKASEVVHPDDLKETIEAQIA 191

Query: 263 T-SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL----SHRNHPSLSAYFDE 317
                +S   +      +            L++ S     +L       +          
Sbjct: 192 AHMAGTSYNVESRHLRADGIYRWHNVLGLPLRDQSGAIQRWLHLLIDIDDRKRAEVALAN 251

Query: 318 GENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
            E  +   V        +++  G L  AN   L   +      +E     +T        
Sbjct: 252 SERESRLIVGTIAGMVALFTPEGQLNGANQQLLDYFQLP----LEEVVNWATNGITHPDD 307

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
             + ++                R    + +               +     +   G+  +
Sbjct: 308 LQHCVETFTASLKTGEPYDFETRF---RRHDGEFRWFQVRGHPVKDDNGGIVRWYGLLTD 364

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             D R     +    ++L  I+ +    I ++  +G + S N    + FGY   +  +  
Sbjct: 365 IDDGRRAVEALREREIELQLIVNSIPGLIIVLRPDGAVESVNDQSLRYFGYDFNEHQKWK 424

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556
               +  +          E ++    Q+ E +      +      ++    +       +
Sbjct: 425 TNDIIHPDDRDRGVARFAEAVAAG--QSYEVVERLRRHDGVYRWFQVRGTPVRDYEGLVV 482

Query: 557 ----TMHDISEWKQEKNKLSHAKKIAEK 580
                ++DI + K  +  L+++++    
Sbjct: 483 RWYFLLNDIDDRKHAEVALANSEREFRH 510



 Score = 40.8 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 10/108 (9%), Positives = 30/108 (27%), Gaps = 2/108 (1%)

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
              +A       +  +G +   NR+  +  G          +   +       +  +L  
Sbjct: 7   QFFDALPGMAWTMLEDGQVDFVNRSWVEFTGLRPASGESWRWEDAVHPADVGAVTAHLQS 66

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL--PFSSCYSLTMHDI 561
           +   + + T+E     +  E     ++    +        +     +I
Sbjct: 67  VRHAETQGTIEARLRNAAGEFHHFLIQWAPLEDAPHGVVNWCAVATNI 114


>gi|331000363|ref|ZP_08324044.1| response regulator receiver domain protein [Parasutterella
           excrementihominis YIT 11859]
 gi|329572159|gb|EGG53824.1| response regulator receiver domain protein [Parasutterella
           excrementihominis YIT 11859]
          Length = 894

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 92/358 (25%), Positives = 160/358 (44%), Gaps = 16/358 (4%)

Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEIL 517
              D   I N +      +    ++ G+  + I    +           + + + L +  
Sbjct: 257 NVDDVFIIFNEKKEPEYVSDNSLRILGFDPDAITNNKEELLNRFYDEDRNWLRNILND-R 315

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI 577
           ++    T      GS++      L +   +        +++ D +E    +  L+ A   
Sbjct: 316 TIIKTATRNIELKGSSQN---FQLSVYPVRQGLIDWTVVSLFDETEQIAYQKNLADALTT 372

Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
           A+  S  KSDFL+ +SHEIRTP+ AIIG + +  ++        +  +       +   +
Sbjct: 373 AKNASQAKSDFLSHMSHEIRTPMNAIIGMTTIALSRIG---DKQKVEDCLKKTLLASRHL 429

Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR- 696
           L ++ND+LD+SKIES K+ L +E   L E V    +L++  A EK +       N+I + 
Sbjct: 430 LGLINDILDMSKIESNKLALSYENFDLQETVHCIYNLIEPQAKEKGVSFEI-ITNDIRQE 488

Query: 697 -ILADLRSVKQIALNILSNAIHFTPSGGQIIISTT--HTSNEEVILR--VRDTGVGMTNY 751
            ++ D   V Q+ +N+++NA+ FTP GG++ +  +  HTS E + LR  + D G+GM   
Sbjct: 489 CLVGDPLRVNQVFINVIANAVKFTPRGGKVTMRLSEKHTSPEHIHLRCVISDNGIGMKKE 548

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            L +   PF Q          GTGLGL +   +V+   G   + S   KG+   I  P
Sbjct: 549 FLSRVFLPFEQETAEIAQHFGGTGLGLAITHNLVNLMGGSIDVQSEEGKGSTFTIDLP 606


>gi|283853805|ref|ZP_06371028.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283570809|gb|EFC18846.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 1263

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 114/826 (13%), Positives = 243/826 (29%), Gaps = 97/826 (11%)

Query: 59   QESVSNTNYLDSENTFVFDPIPRTVRFTWNI-DAHGYLKEISEELPKTIGNYAFKMIGMR 117
                S     + E      P        W   D        +    + +         M 
Sbjct: 307  ARQESEARAAELEAVMRQTPAA-----IWITRDTEARTVIGNPAGHRMLRMEPAPPFSMA 361

Query: 118  LCDVSDILHIDPNNHI----GDLL---KRQNTWYGKTT-LWPIEGTNLYVPIDLAALPIY 169
            +                      +    R  +   +   L   +G+     I  +A+P+ 
Sbjct: 362  MPGDGPTCRASKEGRELTFEQRAMYRAARGESVTDEEIDLVYPDGSGR--TIFGSAVPLR 419

Query: 170  SRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS 229
            +   E +G    G+           A  ++   K             +   +        
Sbjct: 420  NAREEVTGA--VGVFLDVTEQKRIEAALRQSQAKLEAALASMADAVFISDAEGRFIHVND 477

Query: 230  P----------PPHLRMKNKVSSLTEYYAHKDDVLKTE--KYPLLTSEESSLPEQEDFHT 277
                           R   +   + + +     +   +    P     E++  ++     
Sbjct: 478  AFATFHKFRNKEECARTFAQYPGILDVFLPDGTLAPVDQWAVPRALRGETATNDEYTLRR 537

Query: 278  INLNQYTKKQ-YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP----IP 332
             +  +       F  +++        +      +     +    L    + +      + 
Sbjct: 538  KDTGETWVGSYAFAPIRDGDGAIVGSVVVGRDITERKKAEHELLLKEGELREAQRIAHLG 597

Query: 333  FFVYSHGN-LFYANPSFLLLTKYKSVDDIEI-AGGLSTLLDAPKLSDNNAIKPVMLYRSD 390
             + +        A+P    +                 TL         NA     +    
Sbjct: 598  SWHWDAATDATTASPELYAIYGLDPAQPFPDFRQQRGTLYPEAGWERINAAVGQSIATGV 657

Query: 391  RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM--- 447
               +   A  H         + +T       +   +     G   +  + ++ ++ +   
Sbjct: 658  GYELDVKAFCH------GEPIWITTRCEVVRDMAGKISGLRGTVQDITERKLQEQVLTFL 711

Query: 448  -------------EIEVMQLCSIL------------EATSDGIAIINREGIILSTNRAVS 482
                         +     L  IL            +  +     +  +G     N + +
Sbjct: 712  ATCGHHRDGLDFFQSLARYLAEILRMDFVCIDRLEGDGLTARTLAVYFDGHFED-NLSYA 770

Query: 483  KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
             L   P  +++ K    +         +  +   ++ +    +               L 
Sbjct: 771  -LADTPCGEVVGKTVCCYPRNVRGLFPDDAVLADMAAESYVGITLWDAAGRPSG----LI 825

Query: 543  IIIKK--LPFSSCYSLTMHDIS-------EWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
             +I +  L  S      +  +        E       L  AK+ AE  S  KS+FLA +S
Sbjct: 826  AVIGRHALKDSRLAESILQMVGGRAGSELERLYAAEALLLAKETAENASRTKSEFLANMS 885

Query: 594  HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
            HEIRTPL  ++G  +++              EY     +S   +  +++D+LD+S+IE+G
Sbjct: 886  HEIRTPLNGVLGMLQLMTTTPLDT----EQKEYVLAAIQSSKRLTRLLSDILDLSRIEAG 941

Query: 654  KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNIL 712
            ++ +     +L    +  + L  + A +K + +  +    +P  ++ D   ++QI  N++
Sbjct: 942  RLVIQEGEFTLAPLRTSVLELFFVAAKDKGLSLDFTLDPALPPRLVGDEARLRQILFNLV 1001

Query: 713  SNAIHFTPSGGQIIISTTHTSN-----EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
             NA+ FT  G  + ++             V+  V DTG+G+    L    +PF Q   + 
Sbjct: 1002 GNALKFTEKGS-VTVAAVPLGATDAVPARVLFTVTDTGIGIPPDRLRDIFEPFVQAEGTY 1060

Query: 768  QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
              R +G GLGL + K +V    G   I + P +GT   +  P   T
Sbjct: 1061 TRRFQGAGLGLSIVKKLVGLMGGSLEIDTAPGQGTTCYLSLPFRRT 1106



 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 35/415 (8%), Positives = 103/415 (24%), Gaps = 17/415 (4%)

Query: 182 GIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS 241
             + V+R     RA    LD     + +       ++  K  +          R+    +
Sbjct: 182 ATIFVDRGQRVMRATPAALDIFHLAVED---AGRPLDAIKARVEDPHLAGDIERVLGGQN 238

Query: 242 SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301
            +       +     ++       + +  E       ++      +      N   E+  
Sbjct: 239 VVEREVTGPEGRCYVKRVFPFRDGQ-AEAEGAVLTYADVTALKAAEGVLLRSNEELEALV 297

Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH--GNLFYANPSFLLLTKYKSVDD 359
            +  R         +         + + P   ++           NP+   + + +    
Sbjct: 298 AIRTRELELARQESEARAAELEAVMRQTPAAIWITRDTEARTVIGNPAGHRMLRMEPAPP 357

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
             +A                               + +     + +   +   +      
Sbjct: 358 FSMAMPGDGPTCRASKEGRELTFEQRAMYRAARGESVTDEEIDLVYPDGSGRTIFGSAVP 417

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
             N   E     G+  +  + +  +  +     +L + L + +D + I + EG  +  N 
Sbjct: 418 LRNAREEVTGAVGVFLDVTEQKRIEAALRQSQAKLEAALASMADAVFISDAEGRFIHVND 477

Query: 480 AVSKLFGYPVEDILRKPFTVF------LEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
           A +    +  ++   + F  +         +             +L              
Sbjct: 478 AFATFHKFRNKEECARTFAQYPGILDVFLPDGTLAPVDQWAVPRALRGETATNDEYTLRR 537

Query: 534 KEEKLLSL-RIIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAEKESS 583
           K+     +       +           +   DI+E K+ +++L   +    +   
Sbjct: 538 KDTGETWVGSYAFAPIRDGDGAIVGSVVVGRDITERKKAEHELLLKEGELREAQR 592



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 59/591 (9%), Positives = 158/591 (26%), Gaps = 67/591 (11%)

Query: 35  ETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGY 94
           E  +S  E       E       N+E  +    L   N FV + +  T   T  +D    
Sbjct: 135 EELQSASEEMEASREELQAL---NEELSAKVEELSKANGFVENLLRCTNLATIFVDRGQR 191

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKRQNTWYGKTTLWPIE 153
           +   +        + A +  G  L  + + +        I  +L  QN    + T    E
Sbjct: 192 VMRATPAALDIF-HLAVEDAGRPLDAIKARVEDPHLAGDIERVLGGQNVVEREVTG--PE 248

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
           G      +     P      E  G                  +  R +++   L  I+  
Sbjct: 249 GRCYVKRVF----PFRDGQAEAEGA--VLTYADVTALKAAEGVLLRSNEELEALVAIRTR 302

Query: 214 HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH-----KDDVLKTEKYPLLT----- 263
              + +++ +  + +      +    +    +  A                P        
Sbjct: 303 ELELARQESEARAAELEAVMRQTPAAIWITRDTEARTVIGNPAGHRMLRMEPAPPFSMAM 362

Query: 264 ------------SEESSLPEQEDFHTINLNQYTKKQYFG-------------------TL 292
                         E +  ++  +        T ++                        
Sbjct: 363 PGDGPTCRASKEGRELTFEQRAMYRAARGESVTDEEIDLVYPDGSGRTIFGSAVPLRNAR 422

Query: 293 QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLL 351
           +  +     +L       + A   + +      +       F+    G   + N +F   
Sbjct: 423 EEVTGAVGVFLDVTEQKRIEAALRQSQAKLEAALASMADAVFISDAEGRFIHVNDAFATF 482

Query: 352 TKYKSVDD----IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
            K+++ ++         G+  +           +    + R+ R   A +      + + 
Sbjct: 483 HKFRNKEECARTFAQYPGILDVFLPDGT--LAPVDQWAVPRALRGETATNDEYTLRRKDT 540

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
             +   ++      +     +    +  +  + +  + ++ ++  +L         G   
Sbjct: 541 GETWVGSYAFAPIRDGDGAIVGSVVVGRDITERKKAEHELLLKEGELREAQRIAHLGSWH 600

Query: 468 INREGIILSTNRAVSKLFGYPVED---ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
            +      + +  +  ++G          R+       +     +N  + + ++  +   
Sbjct: 601 WDAATDATTASPELYAIYGLDPAQPFPDFRQQRGTLYPEAGWERINAAVGQSIATGVGYE 660

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSH 573
           L+        E   ++ R  + +      S    T+ DI+E K ++  L+ 
Sbjct: 661 LDVKAFC-HGEPIWITTRCEVVRDMAGKISGLRGTVQDITERKLQEQVLTF 710



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/430 (9%), Positives = 106/430 (24%), Gaps = 31/430 (7%)

Query: 184 VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL 243
           +      + P      +D        +       E           P   L     +   
Sbjct: 41  LRPAAAPDGPV--TLAVDPVLGDDGRVLSLLVVFEPAAASPAGAGPPLAALSESGAIQRY 98

Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303
                   D L+          E      E+  ++N    +  +     +   +   E L
Sbjct: 99  EAELQAAHDRLREVMEHDEALHEELRASNEELLSMNEELQSASEEMEASREELQALNEEL 158

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEI 362
           S +          +        +    +   FV     +  A P+ L +      D    
Sbjct: 159 SAKVE-----ELSKANGFVENLLRCTNLATIFVDRGQRVMRATPAALDIFHLAVEDAGRP 213

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ----WNRENSLAMTFIPF 418
              +   ++ P L+ +           +R       R +  +     + +       + +
Sbjct: 214 LDAIKARVEDPHLAGDIERVLGGQNVVEREVTGPEGRCYVKRVFPFRDGQAEAEGAVLTY 273

Query: 419 EKANQFPENMPQNGIEPEDVDT---------RINKRKMEIEVMQLCSILEATSDGIAII- 468
                            E+++           + +++ E    +L +++  T   I I  
Sbjct: 274 ADVTALKAAEGVLLRSNEELEALVAIRTRELELARQESEARAAELEAVMRQTPAAIWITR 333

Query: 469 NREGIILSTNRAVSKLFGYPV-----EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
           + E   +  N A  ++            +     T    +    +         +     
Sbjct: 334 DTEARTVIGNPAGHRMLRMEPAPPFSMAMPGDGPTCRASKEGRELTFEQRAMYRAARGES 393

Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAE 579
             ++       +    ++      L  +            D++E K+ +  L  ++   E
Sbjct: 394 VTDEEIDLVYPDGSGRTIFGSAVPLRNAREEVTGAVGVFLDVTEQKRIEAALRQSQAKLE 453

Query: 580 KESSHKSDFL 589
              +  +D +
Sbjct: 454 AALASMADAV 463


>gi|157374126|ref|YP_001472726.1| histidine kinase [Shewanella sediminis HAW-EB3]
 gi|157316500|gb|ABV35598.1| Histidine kinase [Shewanella sediminis HAW-EB3]
          Length = 938

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 106/534 (19%), Positives = 197/534 (36%), Gaps = 46/534 (8%)

Query: 314 YFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                       +    I  + YS      Y +  F  L   +    +      S +   
Sbjct: 117 QAKHKLERLNHAIKGANIGIWEYSPHSKFCYFSLKFKELIGLEIDTSLSWQHFKSMIDPR 176

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
            +   +  +  +       T      R        E    +        +    +    G
Sbjct: 177 DQHKLDVYLDDIF---EPGTRFHLEFRAQITGK--ERWFELRSEAVLSIDNHSTHT---G 228

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI--INREGIILS-TNRAVSKLFGYPV 489
              +  + +     +          L+A + G     I+ E   +   +   + +F    
Sbjct: 229 SLIDCTEAKETLFALHDANESKNIALDAGNIGNWRAEIDSENNWVWDWDSRANNMFALHP 288

Query: 490 EDILRKP-FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
           EDI     +   L  +    +   +   LS       +  ++    E   +  +  + + 
Sbjct: 289 EDIGNLDKWAERLHPDDLDRIIAAVDHSLSTGELFDQQYRSILPHGEVIYVHAKGKVGQN 348

Query: 549 PFSS--CYSLTMHDIS-------EWKQEKNKL-----------SHAKKIAEKESSHKSDF 588
                        D S       E ++  ++L             AK  AE+ +  KS+F
Sbjct: 349 RDKQNCRIDGICIDQSPIFKIQAELQKANDELEARVTQRTQEFQQAKVRAERANQAKSEF 408

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
           L+ +SHE+RTP+ A+IG  +++   +     NP  +        S   ++ I+ND+LDI+
Sbjct: 409 LSMMSHELRTPMNAVIGSLDLLTLSK----QNPESMSLIETATTSATNLIYILNDILDIN 464

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQI 707
           KIESGKM L     S+ E +   + +    A++KR+ +       IP++L  D   V+QI
Sbjct: 465 KIESGKMQLEQRDFSITEVIDNVVQVFLPLAHKKRLNLHIYEDPQIPKLLEGDAVKVRQI 524

Query: 708 ALNILSNAIHFTP--SG--GQIIISTTHTSNEEVI----LRVRDTGVGMTNYELEKAMKP 759
             N+L NAI FT    G  G+I + T  + + ++I      + D G+G+     +K   P
Sbjct: 525 LFNLLGNAIKFTHTVEGKPGEIRLITNISEHNDIIYKISFSIIDNGIGIDKETQKKLFTP 584

Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
           F Q   S   +  GTGLGL ++  +     G+  + STP +G+   ++ P + +
Sbjct: 585 FMQAQRSTTRKYGGTGLGLAISGNLTSMMGGEIKLNSTPEQGSTFTVVLPFWRS 638


>gi|257792818|ref|YP_003183424.1| histidine kinase [Eggerthella lenta DSM 2243]
 gi|257476715|gb|ACV57035.1| histidine kinase [Eggerthella lenta DSM 2243]
          Length = 554

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 84/374 (22%), Positives = 158/374 (42%), Gaps = 12/374 (3%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREG-IILSTNRAVSKLFGYPVEDILR--KPFTVF 500
           +  +E        ++    D   + + +   +   +  V KL G  VE +    +  +  
Sbjct: 33  ELAIESREQLFSMLVRNADDIYVMFSPDAYEVEYVSPNVEKLLGVSVEAVKNNIRALSDS 92

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
               +       +  +   +  Q   +     T E +     +  + +     Y L + D
Sbjct: 93  AADPSSDPRIDDIASLEEGECLQVFRERIQARTGERRWYQETLYRESIKGVDKYVLVLSD 152

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
            +  ++    L  A  IA   +  KS FLA +SH+IRTP+ AI+G +++ +        +
Sbjct: 153 RTNEQKGSLMLEQALDIARSSNEAKSQFLANMSHDIRTPINAIVGMTKIARE---SGEAS 209

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
            +     + I  S   +L+++ND+LD+S+IESG+M L      +D+ V    ++++  A 
Sbjct: 210 EKIAGCLDAITASSRHLLELINDVLDMSRIESGQMELQERRFDIDDVVGGVEAIIRPQAQ 269

Query: 681 EKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN----- 734
            K   +R   +         D   + QI LN+ SNA+ +T  GG I +     +      
Sbjct: 270 AKSQELRIDRSKMKHKAFSGDELRISQILLNLASNAVKYTQEGGSIALVVQELAKTRPSY 329

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
             V   + D G+GM+   +E+   PF +       R +GTGLG+ + KA++DA  G   +
Sbjct: 330 ASVAFTITDNGMGMSPEFVERIFDPFERSEEVSIARIQGTGLGMSITKALIDAMGGIVEV 389

Query: 795 FSTPAKGTLIEIIF 808
            S   +G+   +  
Sbjct: 390 DSEKGRGSSFRVTL 403


>gi|170748989|ref|YP_001755249.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium radiotolerans JCM 2831]
 gi|170655511|gb|ACB24566.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium radiotolerans JCM 2831]
          Length = 527

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 90/513 (17%), Positives = 190/513 (37%), Gaps = 30/513 (5%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
           P   A    G       +D+  I  +V     G     +P+   L     V+D+      
Sbjct: 20  PHPGAGMPLGAEDLRNILDEAGICTWVLDIPSGRTI-VSPTCARLFGV-PVEDLTSFAAT 77

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
             L       D+   +   +  +     +       ++ +      +      +     +
Sbjct: 78  QAL----VHPDDREARAQAIRHALEHGGSYEVDYRVVRPDG-QVHWLRSRGTVQVGPDGK 132

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
                G+       R     +      L SILE   D + +I+ +  I S + A  + FG
Sbjct: 133 PCGHRGVVTSIHAQRQADEDLRAREAHLRSILETVPDAMVVIDEQARIKSFSAAAVRQFG 192

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT--LEKITLGSTKEEKLLSLRII 544
           Y  ED+  +  ++ + +   +  + Y+   LS   R+   + ++ +G  K+     + + 
Sbjct: 193 YAEEDVAGRNVSLLMPEPYRTQHDAYMARYLSTGERRIIGIGRVVVGQRKDGSTFPMELS 252

Query: 545 IK--KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS--HKSDFLARVSHEIRTPL 600
           +   +      ++  + D++E +Q + +L   +      S      +  + ++HEI  PL
Sbjct: 253 VGEMRSGGERYFTGFIRDLTERRQTETRLQELQSELVHMSRFTALGEMASTLAHEINQPL 312

Query: 601 TAIIGFSEVIKNQRFGPLGNP--RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
           TAI  + +  +       G    +  +  N           ++  L +      G+ ++ 
Sbjct: 313 TAIASYLKGCRRLLSRMEGAEVLKLSDAVNEAADQALRAGQVIRHLREFVTRGEGERHIE 372

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718
                L + + EA +L  + A EK + +  +     P +LAD   V+Q+ LN++ NAI  
Sbjct: 373 ----GLPKLIEEASALALVGAREKGVHVTFALDPAAPLVLADRIQVQQVLLNLIRNAIEA 428

Query: 719 T--PSGGQIIISTTHTS-NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
                  +++++T     +  V ++V DTG G+      +  +PF     +      G G
Sbjct: 429 MQGEPRRELVVATRALPVDGLVEVQVSDTGSGIAPDVAAQLFQPFVTTKAN------GMG 482

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           +GL + + +V+A+ G+      P  GT      
Sbjct: 483 VGLSICRTIVEAHGGRISAGPGPDGGTEFRFTL 515



 Score = 54.3 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 25/253 (9%), Positives = 56/253 (22%), Gaps = 14/253 (5%)

Query: 86  TWNID-AHGYLKEISEELPKTIGNYAFKMIGMRLCD-VSDILHIDP-NNHIGDLLKRQNT 142
           TW +D   G    +S    +  G     +        +      +     I   L+   +
Sbjct: 44  TWVLDIPSGR-TIVSPTCARLFGVPVEDLTSFAATQALVHPDDREARAQAIRHALEHGGS 102

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
           +     +   +G      +          + +  G RG  +V             +  + 
Sbjct: 103 YEVDYRVVRPDG--QVHWLRSRGTVQVGPDGKPCGHRG--VVTSIHAQRQADEDLRAREA 158

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPP------PHLRMKNKVSSLTEYYAHKDDVLKT 256
               + E       V  E+  I S  +            +  +  SL     ++      
Sbjct: 159 HLRSILETVPDAMVVIDEQARIKSFSAAAVRQFGYAEEDVAGRNVSLLMPEPYRTQHDAY 218

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
               L T E   +           +  T        +  S     +       +     +
Sbjct: 219 MARYLSTGERRIIGIGRVVVGQRKDGSTFPMELSVGEMRSGGERYFTGFIRDLTERRQTE 278

Query: 317 EGENLTPETVDKC 329
                    +   
Sbjct: 279 TRLQELQSELVHM 291



 Score = 44.6 bits (104), Expect = 0.073,   Method: Composition-based stats.
 Identities = 33/251 (13%), Positives = 66/251 (26%), Gaps = 18/251 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTWY--- 144
           ID    +K  S    +  G     + G  +  +    +   ++  +   L          
Sbjct: 174 IDEQARIKSFSAAAVRQFGYAEEDVAGRNVSLLMPEPYRTQHDAYMARYLSTGERRIIGI 233

Query: 145 -GKTTLWPIEGTNLYVPIDLA-ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
                    +G+    P++L+         R F+GF         R   + R    RL +
Sbjct: 234 GRVVVGQRKDGSTF--PMELSVGEMRSGGERYFTGF--------IRDLTERRQTETRLQE 283

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
             S L  + +  +  E           P   +    K            +VLK       
Sbjct: 284 LQSELVHMSRFTALGEMASTLAHEINQPLTAIASYLKGCRRLLSRMEGAEVLKLSDAVNE 343

Query: 263 TSEESSLPEQEDFHTIN--LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
            ++++    Q   H          ++   G  +   + S   L       +   F     
Sbjct: 344 AADQALRAGQVIRHLREFVTRGEGERHIEGLPKLIEEASALALVGAREKGVHVTFALDPA 403

Query: 321 LTPETVDKCPI 331
                 D+  +
Sbjct: 404 APLVLADRIQV 414


>gi|121591384|ref|ZP_01678667.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           2740-80]
 gi|121546763|gb|EAX56935.1| signal transduction histidine-protein kinase BarA [Vibrio cholerae
           2740-80]
          Length = 727

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 84/317 (26%), Positives = 147/317 (46%), Gaps = 14/317 (4%)

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568
           ++      L + +   +        K    +++ +    +           D+ E  ++ 
Sbjct: 211 VDRIRRGHLDVRIEGKMHGELDTLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQL 270

Query: 569 N----KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
                +L  AKK A++ +  KS+FLA +SHE+RTPL  +IGF+  +   +          
Sbjct: 271 EIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTN----SQA 326

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           +Y   I++S N +L I+ND+LD SK+E+GK+ L   P    E + E ++L    A+EK +
Sbjct: 327 DYLQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGL 386

Query: 685 LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT----SNEEVIL 739
            I       IPR ++ D   ++Q+  N++ N+I FT  G  I +S           ++  
Sbjct: 387 EITLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERG-NIDVSVEMRALRDDVIDLQF 445

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            VRDTG+G++  +  +  + F Q   S   R  GTGLGL + + +V    G+  + S   
Sbjct: 446 MVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLH 505

Query: 800 KGTLIEIIFPLYDTSHP 816
           +G+       L+ T  P
Sbjct: 506 QGSTFWFTLRLHTTELP 522


>gi|255746876|ref|ZP_05420821.1| BarA sensory histidine kinase [Vibrio cholera CIRS 101]
 gi|262162041|ref|ZP_06031057.1| BarA sensory histidine kinase [Vibrio cholerae INDRE 91/1]
 gi|255735278|gb|EET90678.1| BarA sensory histidine kinase [Vibrio cholera CIRS 101]
 gi|262028290|gb|EEY46947.1| BarA sensory histidine kinase [Vibrio cholerae INDRE 91/1]
          Length = 916

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 84/317 (26%), Positives = 147/317 (46%), Gaps = 14/317 (4%)

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568
           ++      L + +   +        K    +++ +    +           D+ E  ++ 
Sbjct: 200 VDRIRRGHLDVRIEGKMHGELDTLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQL 259

Query: 569 N----KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
                +L  AKK A++ +  KS+FLA +SHE+RTPL  +IGF+  +   +          
Sbjct: 260 EIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTN----SQA 315

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           +Y   I++S N +L I+ND+LD SK+E+GK+ L   P    E + E ++L    A+EK +
Sbjct: 316 DYLQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGL 375

Query: 685 LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT----SNEEVIL 739
            I       IPR ++ D   ++Q+  N++ N+I FT  G  I +S           ++  
Sbjct: 376 EITLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERG-NIDVSVEMRALRDDVIDLQF 434

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            VRDTG+G++  +  +  + F Q   S   R  GTGLGL + + +V    G+  + S   
Sbjct: 435 MVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLH 494

Query: 800 KGTLIEIIFPLYDTSHP 816
           +G+       L+ T  P
Sbjct: 495 QGSTFWFTLRLHTTELP 511


>gi|110638298|ref|YP_678507.1| PAS/PAC sensor signal transduction histidine kinase [Cytophaga
           hutchinsonii ATCC 33406]
 gi|110280979|gb|ABG59165.1| PAS/PAC sensor signal transduction histidine kinase [Cytophaga
           hutchinsonii ATCC 33406]
          Length = 407

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 78/358 (21%), Positives = 156/358 (43%), Gaps = 8/358 (2%)

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           +IL    D + + + +  +L  N A  ++F  P E+I+ K     +  N          E
Sbjct: 51  TILNNMGDSVFVKDEQSRLLFVNDAFCQMFNLPREEIIGKTLAEDVPANERESFLKIDKE 110

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---YSLTMHDISEWKQEKNKLS 572
           +L   L    E+       + + L++     +   +S        + DI++ K+ +  L 
Sbjct: 111 VLFDGLENINEETLTVR--DGETLTISTRKSRFIDTSGKRFLVGVIRDITKRKRAEQALR 168

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
            ++K   + ++ K    + ++H++R P   I+  + ++ +    P       +Y   I  
Sbjct: 169 ESEKRYRELNATKDKLFSIIAHDLRGPFNNIVSLAGLLLDAVKVP-DVESSQQYVGMIHS 227

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
           +    L ++++LL+ +K ++G++    E + +   + E + L Q  A  K I +  + + 
Sbjct: 228 TAQHTLVLLDNLLNWAKSQTGQIEYKSEKICVSAIIQEIVDLSQTSAQTKNISLEHTASA 287

Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752
            I  I +D + +K I  N++SNAI FT  GG++ +S     N ++ + V D G+G+    
Sbjct: 288 EI-EICSDEKMLKTILRNLISNAIKFTRKGGRVCVSVKSNQN-QIEITVSDNGIGINEQT 345

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            +K       I +      +G+G GL L K  VD   G   + S   KG+      P+
Sbjct: 346 RKKIFGISSNISSPGTANEKGSGFGLVLCKEFVDKLGGTIGVNSIEGKGSDFTFTLPV 403



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/184 (11%), Positives = 51/184 (27%), Gaps = 13/184 (7%)

Query: 293 QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLL 351
           QN        ++ +   +   +   G    P  ++      FV      L + N +F  +
Sbjct: 20  QNELLRLLPAVNLKEQINAIEFLVAGSAYAPTILNNMGDSVFVKDEQSRLLFVNDAFCQM 79

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411
                 + I           A  +  N     + + +        +    T+      +L
Sbjct: 80  FNLPREEIIGKT-------LAEDVPANERESFLKIDKEVLFDGLENINEETLTVRDGETL 132

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD---GIAII 468
            ++       +   +     G+  +    +  ++ +     +    L AT D    I   
Sbjct: 133 TISTRKSRFIDTSGKRFLV-GVIRDITKRKRAEQALRESEKRYRE-LNATKDKLFSIIAH 190

Query: 469 NREG 472
           +  G
Sbjct: 191 DLRG 194



 Score = 51.2 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/148 (13%), Positives = 42/148 (28%), Gaps = 14/148 (9%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI-GDLLKRQNTWY 144
            +  D    L  +++   +       ++IG  L +       +    I  ++L       
Sbjct: 60  VFVKDEQSRLLFVNDAFCQMFNLPREEIIGKTLAEDVPANERESFLKIDKEVLFDGLENI 119

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRG----FGIVHVNRVDNDPRALGKRL 200
            + TL   +G           L I +R   F    G     G++             +  
Sbjct: 120 NEETLTVRDGET---------LTISTRKSRFIDTSGKRFLVGVIRDITKRKRAEQALRES 170

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228
           +K++  L+  K    S+           
Sbjct: 171 EKRYRELNATKDKLFSIIAHDLRGPFNN 198


>gi|269926605|ref|YP_003323228.1| PAS/PAC sensor signal transduction histidine kinase [Thermobaculum
           terrenum ATCC BAA-798]
 gi|269790265|gb|ACZ42406.1| PAS/PAC sensor signal transduction histidine kinase [Thermobaculum
           terrenum ATCC BAA-798]
          Length = 590

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 72/386 (18%), Positives = 166/386 (43%), Gaps = 28/386 (7%)

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
              +       +I +R ++ +      ++ + ++GI  +++EG I   N A  ++    +
Sbjct: 218 YRALAHHVEARQITQRALDQQRTMTDVMVTSLAEGICALDKEGYITFMNPAACQMLRCTL 277

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
           + +  K F   +           L  +                T +   + +      + 
Sbjct: 278 DKVRNKSFVELVSVEGHDN--SLLVNVPLEGKI-YRNDDCTFRTLDGGTIQVACTSSPIT 334

Query: 550 FSSCYSLT---MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
                        D++E+++ +                + ++L+ +SH++RTPL+ +IG 
Sbjct: 335 LDGRIIGVIVAFRDMTEFRRLE--------------QAREEYLSLISHDLRTPLSVVIGH 380

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
           S+ I        G  R     + I   G  +  +V +LLD + +E+G + L  + V L+ 
Sbjct: 381 SQ-ILKTLLREKGLEREERNVDAIIGGGRQLTRMVENLLDRASLEAGAVKLKLQRVDLES 439

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726
            + +AI  V + AN  R+ +       +     D+  ++++  N+++NA+ ++     +I
Sbjct: 440 WLPDAIERVTVPANRSRVHLVIERGCTLD---VDVDRIERVLGNLVTNALKYSAPETDVI 496

Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
           +    +SN  +I+ V+D G G+   ++ K  + + +    +    EG GLGL +++ +V+
Sbjct: 497 VRAKVSSNN-LIISVKDQGPGIKPEDVPKLFQKYYRTNRGRN---EGLGLGLYISRLIVE 552

Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLYD 812
           A+ G  ++ S P+KG+      P+++
Sbjct: 553 AHGGHIWVESEPSKGSTFSFSLPIHN 578



 Score = 45.0 bits (105), Expect = 0.057,   Method: Composition-based stats.
 Identities = 21/241 (8%), Positives = 55/241 (22%), Gaps = 11/241 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D  GY+  ++    + +     K+      ++  +   D +  +   L+ +       T
Sbjct: 256 LDKEGYITFMNPAACQMLRCTLDKVRNKSFVELVSVEGHDNSLLVNVPLEGKIYRNDDCT 315

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
              ++G  + V    + + +   +    G                    +      SH  
Sbjct: 316 FRTLDGGTIQVACTSSPITL---DGRIIGV--IVAFRDMTEFRRLEQAREEYLSLISHDL 370

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
                      +      ++          +     +        L      LL      
Sbjct: 371 RTPLSVVIGHSQILKTLLREKGL------EREERNVDAIIGGGRQLTRMVENLLDRASLE 424

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
               +        +         +   +  S  +L      +L    D  E +    V  
Sbjct: 425 AGAVKLKLQRVDLESWLPDAIERVTVPANRSRVHLVIERGCTLDVDVDRIERVLGNLVTN 484

Query: 329 C 329
            
Sbjct: 485 A 485


>gi|327484261|gb|AEA78668.1| Sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae LMA3894-4]
          Length = 1176

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 90/382 (23%), Positives = 160/382 (41%), Gaps = 24/382 (6%)

Query: 441 RINKRKMEIEVMQLC---SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP- 496
           R +++  ++   QL     +L+A    I I + +G ++ TN A  K++    E    +P 
Sbjct: 511 RSSEQVAKLSTEQLRWLTELLDAIPSMIFISDAKGEVVLTNAAYRKIYHTCCEKGCVQPQ 570

Query: 497 --FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554
              +     +        + +    +         +             I   +     Y
Sbjct: 571 PECSFLALPDQHEAEFSIIIQAPKSNCSIGEHYFHVTRRA---------ISHPINQRKYY 621

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
               +DI+E K+ +  L  + + A +    ++ FLA VSHE+RTP+ A++G  E++ ++ 
Sbjct: 622 LTLFNDITELKETEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGLMEILASR- 680

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
              L +            S   +   VND+LD SKIE+ ++ L     +L + +   +  
Sbjct: 681 ---LKSSESQLLLTNAISSAERLKLHVNDILDFSKIEAQQLQLDIGLYNLADELGPLLRG 737

Query: 675 VQLYANEKRILIRTSFANN-IPRILADLRSVKQIALNILSNAIHFTPSGGQI-IISTTHT 732
            +  A  K I     ++ N +     D     QI  N+LSNAI FT  G  +  I     
Sbjct: 738 FEASAQLKEIEFDVIWSPNSLLLANLDALRFNQIVTNLLSNAIKFTDQGRVVFKIDVAPE 797

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
               + + V DTG GMT  ++E    PF Q  ++   R  GTGLG+ +   +++   GK 
Sbjct: 798 ---MLTIVVEDTGCGMTQTQIESLFVPFAQADSTITRRFGGTGLGMSIVANLIELMNGKI 854

Query: 793 YIFSTPAKGTLIEIIFPLYDTS 814
            + S   +GT I++  PL   +
Sbjct: 855 EVKSEFEQGTQIKVSLPLVTQT 876


>gi|297545524|ref|YP_003677826.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|296843299|gb|ADH61815.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 470

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 61/252 (24%), Positives = 126/252 (50%), Gaps = 6/252 (2%)

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            +  E  +     +   K  E+    + DF+A VSHE+R+PLT+I G+ + I +   G +
Sbjct: 222 REEDEIGELAKSFNVMAKELEQLEDMRKDFVANVSHELRSPLTSIQGYIDGILD---GTI 278

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
              +  +Y   + +    +  +++D L+++K+ESG+  LH     ++E +  A+   +  
Sbjct: 279 PVEKACDYLKIVQKETRRMSRLIDDFLEMTKLESGQFPLHKTEFDINELIRLAVIKFEKR 338

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738
             EK + ++  F  +   ++AD   ++Q+  N++ NAI F+   G I I T    + +V 
Sbjct: 339 IVEKDLTVKVDFEEDRRIVIADKDKIEQVLSNLIDNAIKFSKEKGIIHIFTETKDD-KVF 397

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           + ++D G+G++  + E     F +   S+    +G GLGL + K +++A+  + ++ S  
Sbjct: 398 ITIKDNGIGISPEDQEHIWDRFYKADKSRGK--DGAGLGLYIVKRIINAHNEEIWVESKI 455

Query: 799 AKGTLIEIIFPL 810
            +G       P+
Sbjct: 456 GRGAAFTFTLPV 467


>gi|90994583|ref|YP_537073.1| hypothetical chloroplast protein 26 [Porphyra yezoensis]
 gi|122238232|sp|Q1XD95|YCF26_PORYE RecName: Full=Uncharacterized sensor-like histidine kinase ycf26
 gi|90819147|dbj|BAE92516.1| unnamed protein product [Porphyra yezoensis]
          Length = 653

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 89/389 (22%), Positives = 175/389 (44%), Gaps = 37/389 (9%)

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
            + N  K+  E  +L +++   +DG  +++++  ++  NR   + FG+  +DI       
Sbjct: 276 EQQNVEKLTSEKAKLETLVSTIADGAILLDKDLRVILVNRTAIENFGWEGKDIAGSMIID 335

Query: 500 FLEQNTPSVMNHYLTEI-----LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-- 552
           +L ++    +   L +I     L   L +T E         +K   + +        S  
Sbjct: 336 YLPEDINQQLFPALNDIVRKNFLEQSLCETQEICIKLQKNYKKTFRVLLTTVLDYKYSIL 395

Query: 553 -CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
              ++T+ D +E                + +  K+ F++ VSHE+RTPL  I  F E + 
Sbjct: 396 KGIAITIQDRTE--------------EVELNEVKNQFISNVSHELRTPLFNIRSFLETLY 441

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
            +    L N + +E+    ++    +  +VND+LD+S++ES +     + + L  A+ + 
Sbjct: 442 -EYHDSLDNRQKLEFLAIANKETERLTRLVNDVLDLSRLESDQ-EYPLQSMDLVSAIEQT 499

Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
           +   QL A +K+I +      N+P IL +   V QI  N++ N++ FT S G I++ T  
Sbjct: 500 VRTYQLSAKDKKIDLHIDIEENLPCILGNYSLVLQILANLIGNSLKFTHSDGIIVLRTYR 559

Query: 732 TSN------------EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
            ++            ++V + + DTG+G++    E+    F +I N      EGTGLGL 
Sbjct: 560 INDSASKLNSTPLQIQKVRVEICDTGIGISKKNQERIFARFLRIEN-YVHTLEGTGLGLS 618

Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           + K ++  +  + +++S    G+      
Sbjct: 619 IVKNIIQKHNSEIHLYSELKNGSCFFFDL 647


>gi|115523745|ref|YP_780656.1| PAS/PAC sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris BisA53]
 gi|115517692|gb|ABJ05676.1| PAS/PAC sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris BisA53]
          Length = 511

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 78/517 (15%), Positives = 180/517 (34%), Gaps = 31/517 (5%)

Query: 316 DEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
                     ++   I  +           + +   L  +              +  +  
Sbjct: 12  RSRNERLQRGIEGSGIGLWELDLTTRELVWSKTARELFGFS-----GEQPISFDIFLSLL 66

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
              +       L RS  +    +      +        +         +        GI 
Sbjct: 67  DPQDREPTVQSLQRSIESGDNFNVEFRVERHPGGE-HWVRTRGSVVRAEDGSPRHLAGIA 125

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
            +  D +  ++ +  +   L SILE   D + +I+  G++   + A  +LFGY   + + 
Sbjct: 126 FDIDDEKQLEQALRTQQNHLRSILETVPDAMIVIDSRGLMRFFSSAAERLFGYSESEAIG 185

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQT--LEKITLGSTKEEKLLSLRIIIKKL--PF 550
           +  +  +     +  +++L    +   R    + +I  G  ++     + + I ++    
Sbjct: 186 RNISELMAGPDRARHDNHLNRYKASGERHIIGIGRIVTGRRRDGTTFPIHLTIGEMQSGG 245

Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS--HKSDFLARVSHEIRTPLTAIIGF-- 606
              ++  + D++E++Q + +L   +      S      +  + ++HE+  PL+AI  +  
Sbjct: 246 ERYFTGFIRDLTEYQQTQARLHELQSELVHVSRLSAMGEMASALAHELNQPLSAISNYMK 305

Query: 607 -SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI-SKIESGKMNLHFEPVSL 664
            S  +      P   P+     +           I+  L D  S+ ES          SL
Sbjct: 306 GSRRLLTGSSDP-NRPKIESAMDRAAEQALRAGQIIRRLRDFVSRGES-----EKRVESL 359

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT--PSG 722
              + EA +L    A E+  L+R +      ++L D   ++Q+ +N+  NA+        
Sbjct: 360 ARLIEEAGALGLTGAREQGALLRFNLDPLSDQVLVDRVQIQQVLVNLFRNALEAMANSEK 419

Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
            ++++S    ++  + + V D+G G          + F     +      G G+GL +++
Sbjct: 420 KELVVSNVRVADHMIEVSVADSGPGFHEDMKSNLFQTFFTTKET------GMGVGLSISR 473

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819
           ++++A+ G+ +  S P  G       P        D 
Sbjct: 474 SIIEAHGGRMWAESNPWGGATFRFTLPAAAQEDLADA 510



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/248 (10%), Positives = 65/248 (26%), Gaps = 12/248 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD-ILHIDPNNHIGDLLKRQNTWY--- 144
           ID+ G ++  S    +  G    + IG  + ++         +NH+              
Sbjct: 159 IDSRGLMRFFSSAAERLFGYSESEAIGRNISELMAGPDRARHDNHLNRYKASGERHIIGI 218

Query: 145 -GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
               T    +GT   + + +         R F+GF     +         +A    L  +
Sbjct: 219 GRIVTGRRRDGTTFPIHLTI-GEMQSGGERYFTGF-----IRDLTEYQQTQARLHELQSE 272

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
             H+  +           +++    S   +    ++         ++  +          
Sbjct: 273 LVHVSRLSAMGEMASALAHELNQPLSAISNYMKGSRRLLTGSSDPNRPKIESAMDRAAEQ 332

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
           +   +               ++K+     +   +     L+          F+       
Sbjct: 333 AL-RAGQIIRRLRDFVSRGESEKRVESLARLIEEAGALGLTGAREQGALLRFNLDPLSDQ 391

Query: 324 ETVDKCPI 331
             VD+  I
Sbjct: 392 VLVDRVQI 399



 Score = 43.9 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 30/391 (7%), Positives = 90/391 (23%), Gaps = 18/391 (4%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIG-MRLCDVSDILHIDPNNH-IGDLLKRQNTW 143
            W +D        S+   +  G    + I       + D    +P    +   ++  + +
Sbjct: 29  LWELDLTTRELVWSKTARELFGFSGEQPISFDIFLSLLDPQDREPTVQSLQRSIESGDNF 88

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +  +    G      +      + + +       G  I      +       +     
Sbjct: 89  NVEFRVERHPGG--EHWVRTRGSVVRAEDGSPRHLAG--IAFDIDDEKQLEQALRTQQNH 144

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
              + E       V   +  +    S    L   ++  ++    +         ++    
Sbjct: 145 LRSILETVPDAMIVIDSRGLMRFFSSAAERLFGYSESEAIGRNISELMAGPDRARHDNHL 204

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
           +   +  E+       +    ++       + +    +    R          E +    
Sbjct: 205 NRYKASGERHIIGIGRIVTGRRRDGTTFPIHLTIGEMQSGGERYFTGFIRDLTEYQQTQA 264

Query: 324 ETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS------- 376
              +       V     +     +                 G   LL             
Sbjct: 265 RLHELQSELVHVSRLSAMGEMASALAHELNQPLSAISNYMKGSRRLLTGSSDPNRPKIES 324

Query: 377 --DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
             D  A + +   +  R      +R  + +     +  +            E        
Sbjct: 325 AMDRAAEQALRAGQIIRRLRDFVSRGESEKRVESLARLIEEAGALGLTGAREQGALLRFN 384

Query: 435 PEDVDTRINKRKMEIEV---MQLCSILEATS 462
            + +  ++   +++I+        + LEA +
Sbjct: 385 LDPLSDQVLVDRVQIQQVLVNLFRNALEAMA 415


>gi|332187205|ref|ZP_08388945.1| sensory box protein [Sphingomonas sp. S17]
 gi|332012905|gb|EGI54970.1| sensory box protein [Sphingomonas sp. S17]
          Length = 1110

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 109/788 (13%), Positives = 224/788 (28%), Gaps = 73/788 (9%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP------NNHIGDLLKR 139
            + +D        +       G    +M G  L +V      D          I      
Sbjct: 213 VFLMDEQQQCVYANAAAETLTGYSLAQMKGRPLHNVVHHTRPDGSHYPLEECPIDRAFPE 272

Query: 140 QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199
           +    G+      +G+    P+   A P+   N +  G                 A  + 
Sbjct: 273 RAQMDGEELFVRPDGSFY--PVRFTASPLLDENEQPVGT--IIEARDITASRARDAALRE 328

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP--PPHLRMKNKVSSLTEYYA-HKDDVLKT 256
            + +F ++ +       V     +             + ++    L    A H DD   +
Sbjct: 329 SEARFRNMADHAPVMMWVTDADGNCTYLNRAWYEFTGQSEDAAHGLGWLDAVHPDDKGWS 388

Query: 257 EKYPLLTSEES-SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
               L  +    +   +      + +            +       Y+      +     
Sbjct: 389 GDMFLAANAAREAFRLEYRLRNRDGSYRWAIDAASPRFDAHGVFLGYIGSVIDINERREA 448

Query: 316 DEGEN----LTPETVDKCPIPFFV----YSHG-----NLFYANPSFLLLTKYKSVD---D 359
           +              +   + F +    +            ANP+F   T          
Sbjct: 449 ENALRISEERYRTLFETIEVGFCIAEVLFDGDQAVDYRFIEANPAFEKQTGLLHAAGRTA 508

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC-IAASARLHTIQWNRENSLAMTFIPF 418
            E+  GL             + +                     I     N +A+ F   
Sbjct: 509 RELVPGLEQFWFDRYGQVARSGEAARFESGSDAMGRWFDVHALRIGHPSANRIAILFNDV 568

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
               Q    + +     + ++ R+ +   E ++     ++E T   IA+++     L+ N
Sbjct: 569 SARRQAELQLREI---NDTLELRVEEAVAERQL--WADVIENTDALIAVVSSGFRYLALN 623

Query: 479 RA----VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
            A      ++FG   +     P  +         +       L  +    +E       +
Sbjct: 624 AAYAEEFERIFGVRPKVGDHLPDLMAQMPEHCEPVLAIWRRALEGENFSVVE-EFGDPDR 682

Query: 535 EEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKES--SHKSDFLA 590
           +     LR                   D+S+  +++ +L+ A++   +            
Sbjct: 683 DRPYYELRFNALHDRMGRFVGAFQYAVDVSDRLRDQARLAEAEEQLRQAQKMEAVGQLTG 742

Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650
            ++H+    L  IIG  E I  +R           + N    S      +   LL  S+ 
Sbjct: 743 GIAHDFNNLLAGIIGSLE-IIERRLSTGRTDGLDRFINGAQTSAQRAAALTQRLLAFSR- 800

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710
              +  L  +P  ++  V     L++       I +    A  +     D   ++   LN
Sbjct: 801 ---RQTLDPKPTDVNRLVFGMEDLIR-RTVGPAIKVEVVGAGGLWPAKVDAAQLESALLN 856

Query: 711 ILSNAIHFTPSGGQIIISTT-------------HTSNEEVILRVRDTGVGMTNYELEKAM 757
           +  NA    P GG++ I T                  + + + V D+G G+    +++  
Sbjct: 857 LAINARDAMPMGGRLTIETANKWLDDRGARERQLPPGQYLSICVTDSGTGIPKDIVDRIF 916

Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP-----LYD 812
            PF          G+GTGLGL +    V  + G+  ++S    GT + +  P     + +
Sbjct: 917 DPFFTTKP----IGQGTGLGLSMIHGFVRQSGGQVRVYSEEGHGTTMCLYLPRFLGEVGE 972

Query: 813 TSHPHDCI 820
              P + I
Sbjct: 973 DQVPDEAI 980



 Score =  112 bits (279), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 35/390 (8%), Positives = 104/390 (26%), Gaps = 12/390 (3%)

Query: 198 KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257
             LD        ++ G   V     D     +P      + +  +           + T 
Sbjct: 75  LPLDASLCRHAILQPGVFIVPDTLEDERFVHNPLVAGDPRLRFYAGALLETSDGLPIGTL 134

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQ---YFGTLQNNSKESFEYLSHRNHPSLSAY 314
                      + E++ F    L +    Q    +                    +    
Sbjct: 135 CVLDTKPRPDGITERQRFTLQLLARQVMAQLDLRYEIAMREEHALRLEAEIAGRNAADQA 194

Query: 315 FDEGENLTPETVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
             E +      ++   +  F+        YAN +   LT Y S+  ++     + +    
Sbjct: 195 HRESKRRLDAVLNNTRMAVFLMDEQQQCVYANAAAETLTGY-SLAQMKGRPLHNVVHHTR 253

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
               +  ++   + R+             ++ +  +   + F      ++  + +     
Sbjct: 254 PDGSHYPLEECPIDRAFPERAQMDGEELFVRPDG-SFYPVRFTASPLLDENEQPVGTIIE 312

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
             +   +R     +     +  ++ +     + + + +G     NRA  +  G   +   
Sbjct: 313 ARDITASRARDAALRESEARFRNMADHAPVMMWVTDADGNCTYLNRAWYEFTGQSEDAAH 372

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS- 552
              +   +  +           + +   R+          ++               +  
Sbjct: 373 GLGWLDAVHPDDKGWSGDMF--LAANAAREAFRLEYRLRNRDGSYRWAIDAASPRFDAHG 430

Query: 553 ---CYSLTMHDISEWKQEKNKLSHAKKIAE 579
               Y  ++ DI+E ++ +N L  +++   
Sbjct: 431 VFLGYIGSVIDINERREAENALRISEERYR 460


>gi|170734531|ref|YP_001773645.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia cenocepacia
           MC0-3]
 gi|169820569|gb|ACA95150.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia cenocepacia
           MC0-3]
          Length = 529

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 77/377 (20%), Positives = 154/377 (40%), Gaps = 21/377 (5%)

Query: 444 KRKMEIEVMQLC--SILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
            R ++    +    +++E+ +D  + +++  G + + N    ++ GY   +I+   F++F
Sbjct: 19  ARDLQHRFAEFRFQTVVESITDYAVFMLDPYGNVATWNAGAERIKGYHAAEIVGHHFSLF 78

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSL 556
              +  +        +         E       K+       + I  +  ++     +  
Sbjct: 79  YPIDAITAGRPS-QGLALAAAHGHFEDEGWRVRKDGTQFWASVTITPVRDATHELCGFIK 137

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
              D++E K+ +          E  +   S F+A ++HE+R  L  +     V++N    
Sbjct: 138 ITRDMTERKRLEE--------LEASTHRLSVFIAMLAHELRNHLAPLRNSVGVLQN---L 186

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
           P   P   +  + ++R    +  +V+DLLD+ +I +GK+ L   PVS+ + V   +  +Q
Sbjct: 187 PDPAPMLAQCRDAVNRQVAQLTRLVDDLLDVGRITAGKVELDARPVSVRDIVCRGVESIQ 246

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
                +   IR     +   +  D   + Q+  N+L NA  F+P GG+I +         
Sbjct: 247 PKLAARGQWIRVDLPTDSVVLHGDDARLVQVLHNLLDNASKFSPHGGRIDVGARIE-GPM 305

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           V + V D GVG+    LE     F Q   + +    G GLGL + ++ V+ + G+    S
Sbjct: 306 VAISVVDHGVGIAPGALETIFDLFEQEGATGRSPSGGFGLGLAICRSFVELHGGRIVAES 365

Query: 797 -TPAKGTLIEIIFPLYD 812
             P  G    +  P+  
Sbjct: 366 GGPGHGATFTVWLPIAQ 382



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/277 (10%), Positives = 72/277 (25%), Gaps = 28/277 (10%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL---KRQNT 142
            + +D +G +   +    +  G +A +++G     +   +           L        
Sbjct: 43  VFMLDPYGNVATWNAGAERIKGYHAAEIVGHHFS-LFYPIDAITAGRPSQGLALAAAHGH 101

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG----K 198
           +  +      +GT  +  + +   P+     E  GF    I            L     +
Sbjct: 102 FEDEGWRVRKDGTQFWASVTI--TPVRDATHELCGF--IKITRDMTERKRLEELEASTHR 157

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP------------HLRMKNKVSSLTEY 246
                    HE++   + +      + +   P P              ++   V  L + 
Sbjct: 158 LSVFIAMLAHELRNHLAPLRNSVGVLQNLPDPAPMLAQCRDAVNRQVAQLTRLVDDLLDV 217

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT----LQNNSKESFEY 302
                  ++ +  P+   +      +     +       +    T    L  +     + 
Sbjct: 218 GRITAGKVELDARPVSVRDIVCRGVESIQPKLAARGQWIRVDLPTDSVVLHGDDARLVQV 277

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG 339
           L +    +       G       ++   +   V  HG
Sbjct: 278 LHNLLDNASKFSPHGGRIDVGARIEGPMVAISVVDHG 314


>gi|302343587|ref|YP_003808116.1| PAS/PAC sensor signal transduction histidine kinase [Desulfarculus
           baarsii DSM 2075]
 gi|301640200|gb|ADK85522.1| PAS/PAC sensor signal transduction histidine kinase [Desulfarculus
           baarsii DSM 2075]
          Length = 510

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 81/505 (16%), Positives = 173/505 (34%), Gaps = 27/505 (5%)

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYSHGNLFY-ANPSFLLLTKYKSVDDIEIAGGLSTLL 370
           +   +    +        P P  V +   +    N +FL        D +          
Sbjct: 2   AEQDNARAAMAELIFQALPTPTLVLNEHMVVQDVNRAFLTRYDLGRADVLGRR-CFEVFH 60

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
                   +  +     R+  +     + +H        ++          ++    +  
Sbjct: 61  SQSLPCPPSRCRF----RAAMSGHTGQSVIHEFVGLDGQAVIEEVALSPLVDERGRVIGV 116

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV- 489
                +    ++ +  +      L  ++++  D + + + +G +L +N    K+   P  
Sbjct: 117 IETIRDVTKAKLMENALIHANEFLNRVMDSMVDAVVVADLKGKVLLSNHQALKILEIPPG 176

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII---IK 546
           ++I       F            L + L     +     T  +  + + + + +    + 
Sbjct: 177 DEITNHRLQDFCPLEE----LRRLRKSLDQGGGRAEAVRTFLTNGQGQRVPVLVNSAVVT 232

Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH--KSDFLARVSHEIRTPLTAII 604
           +           HD+    Q +  LS A+    +           A V+HE+  PLT I 
Sbjct: 233 REGKPVATVGVFHDLRHQIQLERHLSEARLQVVQSDKLARLGQLAAGVAHELNNPLTGIT 292

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
            ++E +  +   P       +    I        DIV DLLD S+    +  +  E + L
Sbjct: 293 IYAE-LVKESLPPDSP--LQDDMTNIVEDAQRCRDIVKDLLDYSR----QTTVRVEDLDL 345

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724
           ++ + +A +L++  A    + +   +      +  D + ++Q+ +N+LSNAI      G+
Sbjct: 346 NQVIEDAFNLIRDDALFLHVDVVRDYHKGPLTLEGDEKLLRQVFINLLSNAIDAMAGRGR 405

Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
           + + T           + DTG G+    L++   PF          G+GTGLGL +   +
Sbjct: 406 LTVRTGLDGQGMRWAEISDTGPGIAPEHLDRIFDPFFTTKAP----GKGTGLGLSVVYGV 461

Query: 785 VDANMGKFYIFSTPAKGTLIEIIFP 809
           V    G   + +T   GT  ++  P
Sbjct: 462 VSRAGGAVEVKNTGPNGTTFKVSLP 486



 Score = 42.7 bits (99), Expect = 0.27,   Method: Composition-based stats.
 Identities = 18/230 (7%), Positives = 55/230 (23%), Gaps = 7/230 (3%)

Query: 98  ISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEG-TN 156
           ++             ++G R  +V     +             +   G++ +    G   
Sbjct: 35  VNRAFLTRYDLGRADVLGRRCFEVFHSQSLPCPPSRCRFRAAMSGHTGQSVIHEFVGLDG 94

Query: 157 LYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR-ALGKRLDKKFSHLHEIKKGHS 215
             V  ++A  P+        G      +           AL    +     +  +     
Sbjct: 95  QAVIEEVALSPLVDERGRVIGV--IETIRDVTKAKLMENALIHANEFLNRVMDSMVDAVV 152

Query: 216 SVEKEKYDIFSQQSPPPHLRMK--NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE 273
             + +   + S       L +   +++++         + L+  +  L      +   + 
Sbjct: 153 VADLKGKVLLSNHQALKILEIPPGDEITNHRLQDFCPLEELRRLRKSLDQGGGRAEAVR- 211

Query: 274 DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
            F T    Q         +     +    +   +        +   +   
Sbjct: 212 TFLTNGQGQRVPVLVNSAVVTREGKPVATVGVFHDLRHQIQLERHLSEAR 261


>gi|229075084|ref|ZP_04208085.1| hypothetical protein bcere0024_23970 [Bacillus cereus Rock4-18]
 gi|228708015|gb|EEL60187.1| hypothetical protein bcere0024_23970 [Bacillus cereus Rock4-18]
          Length = 590

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 86/501 (17%), Positives = 172/501 (34%), Gaps = 41/501 (8%)

Query: 314 YFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                E      +   P+    +  +G+    N    ++T Y + + I     L  L   
Sbjct: 102 LLSRKEEELHTILQNMPVMVDALDYNGDFVLWNRECEIVTGYTAEEIIGNPNALQLLYPD 161

Query: 373 PKLSDNNAIKPVML----YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
                    K +         + +    +  + TI W+                      
Sbjct: 162 HNYRHQIQNKFLTRGKNFRDWEMSLTCKNGEIKTIMWSN-----------ISEQFPVTGF 210

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
               +  +    +  + +++ +  +L  I +   D   +   +G I+         F  P
Sbjct: 211 SYWAVGVDITHLKAIEEQLKQQTSELELIFKTLPDLCFLTEDDGTIIDYKAGSPTKFYVP 270

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            E  + K F   L           + ++        +E           +         L
Sbjct: 271 AEAFMGKKFYEILPSPVAQQFQEAIRQLKDEGKNVIVEYPLTI---NGSIDFFEARCLPL 327

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                  + + DI+E K+ +  L+ +  +A           A V+HE+R PLT I GF +
Sbjct: 328 LQDK-IMIIVRDITERKKAEELLNKSDTLA-----AIGQLAAGVAHEVRNPLTVIKGFIQ 381

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
                    +      +Y + +      +  I+ + L I+K +     ++ E  ++ +  
Sbjct: 382 ------LFQINKEDQEKYFDLMLSEIERIEAILQEFLSIAKTD----EINTEKKNIYQIF 431

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
              +SL+   A    I +     +    I      +KQ+ +NIL N+I    +GG+I I 
Sbjct: 432 KNVVSLINTKAIMTNIQVELFTDSEEIIIECSENQLKQVFINILQNSIEAMLNGGKISIH 491

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                   VI+ V D G+G+    +++  +PF         + +GTG+GL L+  +++++
Sbjct: 492 IKEIHKNGVIISVIDEGIGIPEERIKRLGEPFY------STKEKGTGIGLMLSYKIIESH 545

Query: 789 MGKFYIFSTPAKGTLIEIIFP 809
            G   I S    GT + I  P
Sbjct: 546 QGTISIMSEVGVGTTVTIYLP 566


>gi|261211547|ref|ZP_05925835.1| BarA sensory histidine kinase [Vibrio sp. RC341]
 gi|260839502|gb|EEX66128.1| BarA sensory histidine kinase [Vibrio sp. RC341]
          Length = 925

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 87/341 (25%), Positives = 156/341 (45%), Gaps = 19/341 (5%)

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
           F + +   + +P T        ++++      L + +   +        K    +++ + 
Sbjct: 192 FAFRLMHDVTRPITHM-----KNMVDRIRRGHLDVRIEGKMHGELDSLKKGINAMAVSLS 246

Query: 545 IKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
              +           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTPL
Sbjct: 247 EYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPL 306

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
             +IGF+  +   +          +Y   I++S N +L I+ND+LD SK+E+GK+ L   
Sbjct: 307 NGVIGFTRQMLKTQLTN----SQTDYLQTIEKSANNLLTIINDILDFSKLEAGKLALENI 362

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFT 719
           P    E + E ++L    A+EK + I       IPR ++ D   ++Q+  N++ N+I FT
Sbjct: 363 PFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFT 422

Query: 720 PSGGQIIISTTHT----SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
             G  I +S           ++   VRDTG+G++  +  +  + F Q   S   R  GTG
Sbjct: 423 ERG-NIDVSVEMRSLRDDVIDLQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTG 481

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           LGL + + +V    G+  + S   +G+       L+ T  P
Sbjct: 482 LGLVITQKLVSHMGGEISLTSRLHQGSTFWFTLRLHTTELP 522


>gi|269926600|ref|YP_003323223.1| GAF sensor signal transduction histidine kinase [Thermobaculum
           terrenum ATCC BAA-798]
 gi|269790260|gb|ACZ42401.1| GAF sensor signal transduction histidine kinase [Thermobaculum
           terrenum ATCC BAA-798]
          Length = 579

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 65/241 (26%), Positives = 127/241 (52%), Gaps = 3/241 (1%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           + +   + A++    +S  L  VSHE+RTP+ AI GF+  +K      +      ++ N 
Sbjct: 339 EEAKTIEAAKEADKLRSQLLGTVSHELRTPIAAIQGFASSLKCADEVEIPKEMQQDWINE 398

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I+++   +  +V DLLD+S++ESG + +  E   +++ + E    +Q+ A  + ++++ S
Sbjct: 399 IEQNAERLRRLVTDLLDLSRLESGALRMQMEWQDMNDVLDELAPDLQMIAEGRNLVVQVS 458

Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749
             + +P I  D   + Q+  N++ NA  F+P G  I++      N  + + V D G G+ 
Sbjct: 459 --DTLPLIKCDAERIGQVLRNLVENARKFSPPGSNIVVGAERYENG-IRVGVLDEGEGIP 515

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
               +K  + F QI  +     +GTGLGL + + +V+A+ G+ ++ S+P KG++     P
Sbjct: 516 PEYHDKIFERFFQIEGASFRPQKGTGLGLAICRNIVEAHGGRIWVESSPGKGSIFYFTLP 575

Query: 810 L 810
           +
Sbjct: 576 V 576


>gi|194436351|ref|ZP_03068453.1| sensory box histidine kinase AtoS [Escherichia coli 101-1]
 gi|253772857|ref|YP_003035688.1| sensory histidine kinase AtoS [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254162231|ref|YP_003045339.1| sensory histidine kinase AtoS [Escherichia coli B str. REL606]
 gi|194425079|gb|EDX41064.1| sensory box histidine kinase AtoS [Escherichia coli 101-1]
 gi|242377855|emb|CAQ32622.1| AtoS sensory histidine kinase [Escherichia coli BL21(DE3)]
 gi|253323901|gb|ACT28503.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253974132|gb|ACT39803.1| sensory histidine kinase in two-component regulatory system with
           AtoC [Escherichia coli B str. REL606]
 gi|253978299|gb|ACT43969.1| sensory histidine kinase in two-component regulatory system with
           AtoC [Escherichia coli BL21(DE3)]
 gi|323961525|gb|EGB57133.1| hsp90-like protein [Escherichia coli H489]
 gi|332344001|gb|AEE57335.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           UMNK88]
          Length = 608

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 83/371 (22%), Positives = 171/371 (46%), Gaps = 28/371 (7%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            + +         I+E  +DG+  I+R+G + + N A   + GY   +++ +P+++    
Sbjct: 254 AQALRETRTLNDLIIENAADGVIAIDRQGDVTTMNPAAEVITGYQRHELVGQPYSMLF-- 311

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMH 559
              +     + + L                ++ + + L +   ++  +        +   
Sbjct: 312 -DNTQFYSPVLDTLEHGTEHV-ALEISFPGRD-RTIELSVTTSRIHNTHGEMIGALVIFS 368

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           D++  K+ + +++ A+++A        + +A V+HE+R PLTAI G+ ++++ Q   P+ 
Sbjct: 369 DLTARKETQRRMAQAERLAT-----LGELMAGVAHEVRNPLTAIRGYVQILRQQTSDPI- 422

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
              + EY + + +  + +  ++  LL+ S+    +    ++ VSL+  V E + LVQ   
Sbjct: 423 ---HQEYLSVVLKEIDSINKVIQQLLEFSRPRHSQ----WQQVSLNALVEETLVLVQTAG 475

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
            + R+   +   N +  I AD   +KQ+ LNIL NA+    + G+I I T   S+ +  +
Sbjct: 476 VQARVDFISELDNELSPINADRELLKQVLLNILINAVQAISARGKIRIQTWQYSDSQQAI 535

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            + D G G+     +K   PF     S      GTGLGL L++ +++A+ G   + S P 
Sbjct: 536 SIEDNGCGIDLSLQKKIFDPFFTTKAS------GTGLGLALSQRIINAHQGDIRVASLPG 589

Query: 800 KGTLIEIIFPL 810
            G    +I P+
Sbjct: 590 YGATFTLILPI 600



 Score = 40.8 bits (94), Expect = 0.98,   Method: Composition-based stats.
 Identities = 12/117 (10%), Positives = 37/117 (31%), Gaps = 6/117 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G +  ++       G    +++G     +    +    + + D L+          
Sbjct: 278 IDRQGDVTTMNPAAEVITGYQRHELVGQPYSMLF--DNTQFYSPVLDTLEHGTEHVALEI 335

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
            +P     + + +  +   I++ + E  G     I        + +    + ++  +
Sbjct: 336 SFPGRDRTIELSVTTS--RIHNTHGEMIGA--LVIFSDLTARKETQRRMAQAERLAT 388


>gi|224373295|ref|YP_002607667.1| sensor histidine kinase/response regulator [Nautilia profundicola
           AmH]
 gi|223588528|gb|ACM92264.1| sensor histidine kinase/response regulator [Nautilia profundicola
           AmH]
          Length = 1030

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 85/238 (35%), Positives = 125/238 (52%), Gaps = 9/238 (3%)

Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
           + AE+ +  KS FLA +SHEIRTPL  I+GF E++             ++Y N I +S  
Sbjct: 386 RKAEEATKAKSLFLANMSHEIRTPLNGILGFLELLNTTDL----TEEQLDYVNTIAQSAK 441

Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695
            +L IVN++LD+SKIES K++L        +     I L    A +K I + T  + NIP
Sbjct: 442 NLLQIVNNILDVSKIESNKVSLELIDFKAVDEFENTIELFGTPAAQKNIELTTQISPNIP 501

Query: 696 RIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS----NEEVILRVRDTGVGMTN 750
            I+  D+  +K+I  N+LSNAI FTP+ G I +            ++   VRD+G+GM+ 
Sbjct: 502 SIIKGDILKIKEILTNLLSNAIKFTPNNGHIHVKIQLEKIIDNKAKIYFEVRDSGIGMSE 561

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            + EK  + F Q   S   +  GTGLGL + K+ ++   GK Y+ S   KGT      
Sbjct: 562 EQKEKIFEAFSQADESVTRKYGGTGLGLTIVKSYIEMMGGKIYLESELNKGTKFYFNL 619


>gi|295676215|ref|YP_003604739.1| PAS/PAC sensor signal transduction histidine kinase [Burkholderia
           sp. CCGE1002]
 gi|295436058|gb|ADG15228.1| PAS/PAC sensor signal transduction histidine kinase [Burkholderia
           sp. CCGE1002]
          Length = 745

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 103/748 (13%), Positives = 231/748 (30%), Gaps = 47/748 (6%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK 146
           W     G +  ++ +  +  G         +  DV     +         +         
Sbjct: 20  WTALPDGRVDFVNRKWSEYTGRVLGTSSDWQWRDVISADDLPRLLERQTAILASAEPGEI 79

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                         + L   P+          R  GI +            KR +     
Sbjct: 80  PVRLRRFDGQYRRFV-LQISPLRDAEGRIV--RWCGICNDVEDLRRAEEALKRRELDLQL 136

Query: 207 LHEIKKGHSSVEKEKYDIFSQQ----SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
           + E      +V     ++ +Q             + K      +   +D           
Sbjct: 137 IVESIPVPVTVMSPTGEVEAQNRLTSEYFGKSFEELKAWRSGGFIHPEDLEAVIVAQEAS 196

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP----SLSAYFDEG 318
            +  ++   +  +   + +          L+        +                    
Sbjct: 197 LASGTAHNVETRYRRADGSYRWFNVRGFPLRGRDGGILRWFFLSIDIEDSKRAEITLAAS 256

Query: 319 ENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
           E    ET++  P   +    +G   + N  +L     +++  +   G + ++    +   
Sbjct: 257 ERHLNETINALPALIWSARLNGTGEFYNQHYLDYLG-RTLSQVRDYGWMDSVHPDDRAGL 315

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
            +    VM  +      AA AR+              F      +Q  + +   G+  + 
Sbjct: 316 MSVWSSVMASQLPG---AAEARMLRY---DGQYRWFLFRTSPLRDQHGKVVKWYGVNIDI 369

Query: 438 VDTRINKRKMEIEVMQLC--SILEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILR 494
            D +  + ++      L     L    +    ++  G I + +  +  +F + P   +  
Sbjct: 370 DDRKRAEEELRRSEAFLAEGQALARMGNFSWHVDT-GEI-AWSDQLYHIFEFEPGTTVTL 427

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC- 553
                        +    + ++   D    +E        ++ +  + ++  +       
Sbjct: 428 DRIVARYHPEDVGLAFQLIEQVQRGD--SDVESQYRLLMPDQSVKHVHLLGHRATDRPGR 485

Query: 554 --YSLTMHDISEWKQEKNKLSHAKKIAEKESS--HKSDFLARVSHEIRTPLTAIIGFSE- 608
             Y  T  DIS+ ++ +  L  A+      +         A ++HE+  PL+ I+  +  
Sbjct: 486 REYIGTALDISQRRRSEEALDKARSELLNVARITSLGALTASIAHEVNQPLSGIVTNAST 545

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
            ++     P       E A    R GN   D++  L    +    + ++  E V L    
Sbjct: 546 CLRMLAAVPANIEGAQETARRTIRDGNRAADVIARL----RALFSRRSVTLEAVDLGHTA 601

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT----PSGGQ 724
            E ++L+Q   +  R+ +R  FA+ +P +  D   V+Q+ +N+L NA            +
Sbjct: 602 REVVALMQSDLDRDRVSVRAEFADGLPLVGCDRVQVQQVIMNLLRNAADAMSSVDDRPRR 661

Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
           + I T   S+  V L V+D G+G      E+    F    N       G G+GL +++++
Sbjct: 662 MSIKTEAESDGMVRLTVQDAGIGFDPQHTERLFDAFYTTKND------GMGIGLAISRSI 715

Query: 785 VDANMGKFYIF-STPAKGTLIEIIFPLY 811
           ++++ G+ +        G       P+Y
Sbjct: 716 IESHNGRLWAALPKEGPGASFAFCLPIY 743



 Score = 96.6 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/274 (10%), Positives = 76/274 (27%), Gaps = 22/274 (8%)

Query: 325 TVDKCPIPFFVYS-HGNLFYANPSFL----LLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
            +D   +  +     G + + N  +      +    S            L          
Sbjct: 11  VLDALSVMAWTALPDGRVDFVNRKWSEYTGRVLGTSSDWQWRDVISADDL------PRLL 64

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
             +  +L  ++   I        ++                 +     +   GI  +  D
Sbjct: 65  ERQTAILASAEPGEIPV-----RLRRFDGQYRRFVLQISPLRDAEGRIVRWCGICNDVED 119

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
            R  +  ++   + L  I+E+    + +++  G + + NR  S+ FG   E++       
Sbjct: 120 LRRAEEALKRRELDLQLIVESIPVPVTVMSPTGEVEAQNRLTSEYFGKSFEELKAWRSGG 179

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YS 555
           F+       +       L+          T     +       +    L         + 
Sbjct: 180 FIHPEDLEAVIVAQEASLASGTAH--NVETRYRRADGSYRWFNVRGFPLRGRDGGILRWF 237

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
               DI + K+ +  L+ +++   +  +     +
Sbjct: 238 FLSIDIEDSKRAEITLAASERHLNETINALPALI 271



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/419 (8%), Positives = 99/419 (23%), Gaps = 33/419 (7%)

Query: 68  LDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI 127
             SE               W+   +G  +  ++     +G    ++      D       
Sbjct: 254 AASERHLNETINALPA-LIWSARLNGTGEFYNQHYLDYLGRTLSQVRDYGWMDSVHPDDR 312

Query: 128 DPNNHIG-DLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHV 186
                +   ++  Q     +  +   +G   Y        P+  ++ +   + G  I   
Sbjct: 313 AGLMSVWSSVMASQLPGAAEARMLRYDG--QYRWFLFRTSPLRDQHGKVVKWYGVNI--D 368

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ---------SPPPHLRMK 237
                      +R +   +    + +  +          +            P   + + 
Sbjct: 369 IDDRKRAEEELRRSEAFLAEGQALARMGNFSWHVDTGEIAWSDQLYHIFEFEPGTTVTLD 428

Query: 238 NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297
             V+            L  +     +  ES         ++  + +             +
Sbjct: 429 RIVARYHPEDVGLAFQLIEQVQRGDSDVESQYRLLMPDQSVK-HVHLLGHRATDRPGRRE 487

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-------VYSHGNLFYANPSFLL 350
                L            D+  +          +          V    +    N S  L
Sbjct: 488 YIGTALDISQRRRSEEALDKARSELLNVARITSLGALTASIAHEVNQPLSGIVTNASTCL 547

Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
                   +IE A   +          N A   +   R+  +  + +     +       
Sbjct: 548 RMLAAVPANIEGAQETARRTIRD---GNRAADVIARLRALFSRRSVTLEAVDLGHTAREV 604

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469
           +A+     ++          +G+     D    ++ +        ++L   +D ++ ++
Sbjct: 605 VALMQSDLDRDRVSVRAEFADGLPLVGCDRVQVQQVI-------MNLLRNAADAMSSVD 656


>gi|323171897|gb|EFZ57541.1| signal transduction histidine-protein kinase atoS [Escherichia coli
           LT-68]
          Length = 605

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 94/467 (20%), Positives = 199/467 (42%), Gaps = 30/467 (6%)

Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
            +   +   +I      + L +  +         +++  +    I+    +   +    N
Sbjct: 155 SMLPIERNGEILGYIWANELTEDIRRQAWKMDVRIIIVLTAGLLISLLLIVLFSRRLSAN 214

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN--KRKMEIEVMQLCSILEATSDGIAI 467
              +T      A   P  +PQ   E   +   +N   + +         I+E  +DG+  
Sbjct: 215 IDIITDGLSTLAQNIPTRLPQLPGEMGQISQSVNNLAQALRETRTLNDLIIENAADGVIA 274

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
           I+R+G + + N A   + GY   +++ +P+++       +     + + L          
Sbjct: 275 IDRQGDVTTMNPAAEVITGYQRHELVGQPYSMLF---DNTQFYSPVLDTLEHGTEHV-AL 330

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
                 ++ + + L +   ++  +        +   D++  K+ + +++ A+++A     
Sbjct: 331 EISFPGRD-RTIELSVTTSRIHNTHGEMIGALVIFSDLTARKETQRRMAQAERLAT---- 385

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
              + +A V+HE+R PLTAI G+ ++++ Q   P+    + EY + + +  + +  ++  
Sbjct: 386 -LGELMAGVAHEVRNPLTAIRGYVQILRQQTSDPI----HQEYLSVVLKEIDSINKVIQQ 440

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703
           LL+ S+    +    ++ VSL+  V E + LVQ    + R+   +   N +  I AD   
Sbjct: 441 LLEFSRPRHSQ----WQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSPINADREL 496

Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
           +KQ+ LNIL NA+    + G+I I T   S+ +  + + D G G+     +K   PF   
Sbjct: 497 LKQVLLNILINAVQAISARGKIRIQTWQYSDSQQAISIEDNGCGIDLSLQKKIFDPFFTT 556

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             S      GTGLGL L++ +++A+ G   + S P  G    +I P+
Sbjct: 557 KAS------GTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILPI 597



 Score = 40.8 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/117 (10%), Positives = 37/117 (31%), Gaps = 6/117 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G +  ++       G    +++G     +    +    + + D L+          
Sbjct: 275 IDRQGDVTTMNPAAEVITGYQRHELVGQPYSMLF--DNTQFYSPVLDTLEHGTEHVALEI 332

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
            +P     + + +  +   I++ + E  G     I        + +    + ++  +
Sbjct: 333 SFPGRDRTIELSVTTS--RIHNTHGEMIGA--LVIFSDLTARKETQRRMAQAERLAT 385


>gi|304320035|ref|YP_003853678.1| Hybrid sensory histidine kinase [Parvularcula bermudensis HTCC2503]
 gi|303298938|gb|ADM08537.1| Hybrid sensory histidine kinase [Parvularcula bermudensis HTCC2503]
          Length = 796

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 88/313 (28%), Positives = 150/313 (47%), Gaps = 23/313 (7%)

Query: 512 YLTEILSLDLRQTLEKITLG--STKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN 569
            L  + +  L Q +  + +     + ++   LR+       S   +   +D+ +  Q ++
Sbjct: 179 ILARLTAQGLIQPIHSLIMTMQQVQRDRNYRLRVEGLSNDESGQLAAAFNDMLDEIQRRD 238

Query: 570 K------------LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
           +            L  A   AE  S  KS FLA +SHEIRTP+  ++G +E++ +     
Sbjct: 239 ENLEKTVEERTADLEEAVTKAEAASLAKSAFLANMSHEIRTPMNGVLGMAELLMSTELDT 298

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
                  E    I  SG  ++ I+ND+LD SKIE+GK +L+ EP +L E +    +L+  
Sbjct: 299 Y----QRELIGTIMSSGTSLVTIINDILDFSKIEAGKFSLNEEPFNLREGIENVATLMAG 354

Query: 678 YANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
            A EK + +   +  ++P  +  D   ++Q+  N++ NAI FT  G Q++I  T   + E
Sbjct: 355 RAAEKDLELFVRYDPSLPEGVFTDGGRLRQVITNLVGNAIKFTDEG-QVLIDVTGAQSGE 413

Query: 737 ---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
              + + V DTG+G+   +LE   + F Q  N+     EGTGLGL + K +++   GK  
Sbjct: 414 TVDLRISVTDTGIGIPPEKLEAIFEKFEQADNTSSRMYEGTGLGLAICKTIIELMGGKIG 473

Query: 794 IFSTPAKGTLIEI 806
           + S   +G    I
Sbjct: 474 VTSELGRGATFFI 486


>gi|196230564|ref|ZP_03129426.1| PAS/PAC sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
 gi|196225494|gb|EDY20002.1| PAS/PAC sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
          Length = 527

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 86/385 (22%), Positives = 168/385 (43%), Gaps = 12/385 (3%)

Query: 438 VDTRINKRKMEIEVMQ---LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
              +  +  +E+   +     ++L +T D + I + +   +  N+A+  ++G   ++ + 
Sbjct: 7   TLLQRAEEALEMSHRRTRLYEAVLSSTPDLVYIFDLDHRFIYANKALLAMWGKTWDEAIG 66

Query: 495 KPFTVF-LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI-IIKKLPFSS 552
                   E     + +  + + ++       E    G+        + + +I       
Sbjct: 67  HNCLELGYEPWHAEMHDREIEQAVATKQAVRGEVPFTGTAGRRFYDYIFVPVIGADGNVE 126

Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
             + T  DI+E K+ + +L+ AK  AE  S  K DFLA +SHE+RTPL  ++  +   + 
Sbjct: 127 AVAGTTRDITERKEAEQQLAAAKAAAEAASRAKDDFLAALSHELRTPLNPVLLMAVEAER 186

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
               P            I R+  L   +++DLLD+++I  GK+ L  + +++ E +   +
Sbjct: 187 NPDLPAS---VRADFAAIRRNIELEARLIDDLLDLTRITRGKLRLERQALNVHELLRACV 243

Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
             VQ       + +  +       + AD   ++Q+  N+L NA+ F+ +GG +I+ T + 
Sbjct: 244 GFVQPEIEAHGLRLTLALDAAEHWVEADHVRLQQVFWNVLRNAVKFSLAGGDVIVRTANR 303

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
            N ++ + + DTG+G+   +L K    F Q          G GLGL + +A+V+ + G+ 
Sbjct: 304 DN-QLRVEISDTGIGIAAADLPKIFDAFQQGREGNA--FGGLGLGLAITRALVEQHGGRI 360

Query: 793 YIFST-PAKGTLIEIIFPLYDTSHP 816
              S     G      FPL   S P
Sbjct: 361 VAESAGRGLGATFRFEFPLAKQSPP 385



 Score = 57.7 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 23/242 (9%), Positives = 52/242 (21%), Gaps = 9/242 (3%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP--NNHIGDLLKRQNT 142
             +  D        ++ L    G    + IG    ++          +  I   +  +  
Sbjct: 36  LVYIFDLDHRFIYANKALLAMWGKTWDEAIGHNCLELGYEPWHAEMHDREIEQAVATKQA 95

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
             G+    P  GT      D   +P+   +       G           +          
Sbjct: 96  VRGEV---PFTGTAGRRFYDYIFVPVIGADGNVEAVAG--TTRDITERKEAEQQLAAAKA 150

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
                   K    +    +    +  +P   + ++ + +         D         L 
Sbjct: 151 AAEAASRAKDDFLAALSHELR--TPLNPVLLMAVEAERNPDLPASVRADFAAIRRNIELE 208

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
                 L +        L    +      L        +     +   L+   D  E+  
Sbjct: 209 ARLIDDLLDLTRITRGKLRLERQALNVHELLRACVGFVQPEIEAHGLRLTLALDAAEHWV 268

Query: 323 PE 324
             
Sbjct: 269 EA 270



 Score = 45.4 bits (106), Expect = 0.037,   Method: Composition-based stats.
 Identities = 16/139 (11%), Positives = 36/139 (25%), Gaps = 10/139 (7%)

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIA- 363
           +              L    +   P   +++       YAN + L +      + I    
Sbjct: 10  QRAEEALEMSHRRTRLYEAVLSSTPDLVYIFDLDHRFIYANKALLAMWGKTWDEAIGHNC 69

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
             L       ++ D    + V   ++ R  +  +                 F+P   A+ 
Sbjct: 70  LELGYEPWHAEMHDREIEQAVATKQAVRGEVPFTGT------AGRRFYDYIFVPVIGADG 123

Query: 424 FPENMPQNGIEPEDVDTRI 442
             E     G   +  + + 
Sbjct: 124 NVEA--VAGTTRDITERKE 140


>gi|16759375|ref|NP_454992.1| phosphate regulon sensor protein [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29142854|ref|NP_806196.1| phosphate regulon sensor protein [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213027063|ref|ZP_03341510.1| phosphate regulon sensor protein [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
 gi|213051514|ref|ZP_03344392.1| phosphate regulon sensor protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213427747|ref|ZP_03360497.1| phosphate regulon sensor protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|289828483|ref|ZP_06546341.1| phosphate regulon sensor protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|25298521|pir||AE0551 phosphate regulon sensor protein PhoR [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16501666|emb|CAD08853.1| phosphate regulon sensor protein PhoR [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29138486|gb|AAO70056.1| phosphate regulon sensor protein PhoR [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 431

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 72/427 (16%), Positives = 156/427 (36%), Gaps = 37/427 (8%)

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             +L       +     L  + W     L +         +        G+    +  + 
Sbjct: 33  WFLLAAVTGLLVWHFWNLLRLSW----WLWVDRSMTPPPGRGSWEPLLYGLHQMQLRNKK 88

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            +R++   + +  S  E+  D + +   EG I   N    ++ G    D   +     L 
Sbjct: 89  RRRELGNLIKRFRSGAESLPDAVVLTTEEGGIFWCNGLAQQILGLRWPDDNGQNILNLLR 148

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
               +               +   +         + L +R++           +   D++
Sbjct: 149 YPEFTQYL----------KTRDFTRPLHLVLNTGRHLEIRVMPY---TDKQLLMVARDVT 195

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  Q +                + +F A VSHE+RTPLT + G+ E+++ Q        +
Sbjct: 196 QMHQLEG--------------ARRNFFANVSHELRTPLTVLQGYLEMMQEQALEGATREK 241

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                + +      +  +V  LL +SKIE     L  E V +   +       Q  + +K
Sbjct: 242 A---LHTMREQTYRMEGLVKQLLTLSKIEVAPALLLNEKVDVPMMLRVVEREAQTLSQQK 298

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
                 +  +++  +L +   ++    N++ NA++ TP+G  I +S    ++      ++
Sbjct: 299 H-TFTFAVDDSL-SVLGNEEQLRSAISNLVYNAVNHTPAGTHITVSWRRAAHG-AEFCIQ 355

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G G+    + +  + F ++  ++  +  G+GLGL + K  ++ +  +  I S+P KGT
Sbjct: 356 DNGPGIAAEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHALNHHESRLEIDSSPGKGT 415

Query: 803 LIEIIFP 809
               + P
Sbjct: 416 RFSFVLP 422


>gi|170783492|ref|YP_001741985.1| putative signal transduction histidine kinase [Arthrobacter sp.
           AK-1]
 gi|150034979|gb|ABR66990.1| putative signal transduction histidine kinase [Arthrobacter sp.
           AK-1]
          Length = 644

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 114/514 (22%), Positives = 208/514 (40%), Gaps = 28/514 (5%)

Query: 314 YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
             D    L     D+ P+P  V+   N    +   + L      D +    G  +L + P
Sbjct: 9   SKDAFNRLKACAFDEAPLPTAVFRKEN----SEGLVFLGGNSEFDAL--VLGNGSLDEGP 62

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
           +     A+  ++      T    +  +H      +   A                     
Sbjct: 63  ERELAVALTRLVNAALSATSNPPTVAVHL----GDRLEAFRPRFRPFKVPDDPEEYLVVQ 118

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
                +    +  +   +  L  +L+ ++  + + + +G  L  N   +K  G   E I+
Sbjct: 119 LTALTEQDSAESDLHSTIRHLKDLLDNSTALMYVKDLDGRYLIANEYYAKRLGRSAESII 178

Query: 494 RKPFTVFLEQNTPSVM----NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
                    +          +  +    S+ + + L  I      +E    L I    L 
Sbjct: 179 GHTDYDLFAEPIAEAYTKNDDLVIRTAESIAVEEPLAAIGGRIDPDEDSRWLSIKF-PLQ 237

Query: 550 FSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
             +           DI++ K+ +     A   AE+ +  K +FL+R+SHE+RTPL AI+G
Sbjct: 238 DDNGNPYALGAISTDITDLKRAERAARDAMHEAERANRSKDEFLSRMSHELRTPLNAILG 297

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
           F+++++N    P       E A +I  +G  +L +VND+LDI+ IE+G   +    V   
Sbjct: 298 FAQLLQNLPLSP----EAAESAGHILDAGKHLLALVNDVLDITWIEAGAPGITTAAVPAI 353

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ 724
           + + +A+ L++  A+   I I +     + R ILAD + ++Q+ LN+L NA+ F  + G 
Sbjct: 354 DPIHQALQLIRPLASASDIEIASDLHGALHRYILADTQRLRQVFLNLLGNAVKFNTAQGA 413

Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
           + +       + +   + DTG GM   + ++  KPF ++  SQ    EG+GLGL L+K +
Sbjct: 414 VRV-WCEEKADFLRFFIMDTGPGMDESDAQRLFKPFVRL--SQSAEVEGSGLGLALSKRL 470

Query: 785 VDANMGKFYIFST-PAKGTLIEIIFPLYDTSHPH 817
           V    G   I  T P +G+   +  PL      +
Sbjct: 471 VQEMGGDLGIEHTAPGEGSTFFVDMPLAPAPEEN 504



 Score = 47.7 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 34/398 (8%), Positives = 80/398 (20%), Gaps = 28/398 (7%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN-------HIGDLLKRQNT 142
           D  G     +E   K +G  A  +IG    D+      +             + +  +  
Sbjct: 154 DLDGRYLIANEYYAKRLGRSAESIIGHTDYDLFAEPIAEAYTKNDDLVIRTAESIAVEEP 213

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
                     +  + ++ I     P+   N     +    I              +    
Sbjct: 214 LAAIGGRIDPDEDSRWLSIKF---PLQDDNGNP--YALGAISTDITDLKRAERAARDAMH 268

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQ-------------SPPPHLRMKNKVSSLTEYYAH 249
           +    +  K    S    +                    SP       + + +     A 
Sbjct: 269 EAERANRSKDEFLSRMSHELRTPLNAILGFAQLLQNLPLSPEAAESAGHILDAGKHLLAL 328

Query: 250 KDDVLKTEKYPLLTSEE--SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
            +DVL              +++P  +  H                  +      +     
Sbjct: 329 VNDVLDITWIEAGAPGITTAAVPAIDPIHQALQLIRPLASASDIEIASDLHGALHRYILA 388

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
                              +       V+      +     +         D +      
Sbjct: 389 DTQRLRQVFLNLLGNAVKFNTAQGAVRVWCEEKADFLRFFIMDTGPGMDESDAQRLFKPF 448

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
             L      + + +   +  R  +         HT             +           
Sbjct: 449 VRLSQSAEVEGSGLGLALSKRLVQEMGGDLGIEHTAPGEGSTFFVDMPLAPAPEENLLTP 508

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465
            P  G      +       +E     +  ++E+   G+
Sbjct: 509 APSAGAVTNADEHDATILYIEDTHANIR-LVESIIAGM 545


>gi|118591464|ref|ZP_01548861.1| two-component sensor/response regulator hybrid [Stappia aggregata
           IAM 12614]
 gi|118435792|gb|EAV42436.1| two-component sensor/response regulator hybrid [Stappia aggregata
           IAM 12614]
          Length = 808

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 92/408 (22%), Positives = 179/408 (43%), Gaps = 21/408 (5%)

Query: 421 ANQFPENMPQNGIEPEDVDTRINK-RKMEIEVMQL-------CSILEATSDGIAIINREG 472
           A+    ++    ++ + +   + +  ++E    +L        SIL    D +   +++G
Sbjct: 125 ADDMQRSVQALQVKDDKIRRLMARCEELEDRAWELGESDERHASILATLGDVVVRRDQDG 184

Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
           II   N A   +FG            + L +         +T+ L         +     
Sbjct: 185 IITYVNSAADDVFGLGHALQPGATLHLPLLEEV--GFESAVTQALDKTTPGMGFQDLHID 242

Query: 533 TKEE-KLLSLRIIIKKLPFSSCYSL--TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
           T +  +  S   I  +   +    +   + D++E +  + +L  A+  AE  +  KS FL
Sbjct: 243 TAQGPRWFSRIDIPVRDTTTDRQLVQTVLRDVTERRLIEEELLAARHSAESSNEAKSRFL 302

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
           A VSHEIRTPL  ++G + ++++ R           Y   ++ SG  +L +++++LD SK
Sbjct: 303 ATVSHEIRTPLNGVLGMAALLRDTRLTK----EQSAYIEALETSGETLLLLIDEVLDFSK 358

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIA 708
           +E+GK+++   PV +   V   + L+   A+ K + I +    N+P  +  D   V+QI 
Sbjct: 359 VEAGKLDIQAAPVRVGALVESVVELLAPKAHAKSLEIGSMLDPNLPEEVTLDATRVRQIL 418

Query: 709 LNILSNAIHFTPSGGQ-IIISTTHTSNEE--VILRVRDTGVGMTNYELEKAMKPFGQIPN 765
            N++ N I FT  GG  + ++     +    + + VRD+G+G    E E+  + F Q+ +
Sbjct: 419 YNLIGNGIKFTDEGGVAVELTGRSNPDGGGFLDIDVRDSGIGFDEQEAERLFQEFEQVDH 478

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
               +  GTGLGL +A+ +     G+         G    +  P+ ++
Sbjct: 479 GPARKFGGTGLGLAIAQRLAGLMGGEIAAQPAGDGGAQFRVSLPIPES 526


>gi|114776750|ref|ZP_01451793.1| Periplasmic Sensor Hybrid Histidine Kinase [Mariprofundus
           ferrooxydans PV-1]
 gi|114552836|gb|EAU55267.1| Periplasmic Sensor Hybrid Histidine Kinase [Mariprofundus
           ferrooxydans PV-1]
          Length = 841

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 83/261 (31%), Positives = 127/261 (48%), Gaps = 12/261 (4%)

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           +   KL HA   AE  +  KS F+A +SHE+RTPL  IIG S+++ +             
Sbjct: 179 RLIQKLHHAIDAAEAANRAKSQFMANMSHELRTPLNGIIGMSDLLYSTSLSN----EQKR 234

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           +   I  S    L ++  +LD++K+E+GK+ L  EP  L + +   ++L +  A EK I 
Sbjct: 235 FTFVIKESAYHQLSLIERILDMAKLEAGKLELLHEPFDLHQLLHGTVALFEGQAKEKAIR 294

Query: 686 IRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVI--LRV 741
           I   +   IP  ++ D + +KQI LNI+ NA+ FT  G   + +  +  + + V+    V
Sbjct: 295 IALRYDPEIPFALIGDPKHIKQILLNIVGNAVKFTEHGSVTLKVEASEVTEKNVVLQFTV 354

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            DTG+GM+     +  + F Q   S   R  GTGLG  +AK + +   G   + S    G
Sbjct: 355 TDTGIGMSEDVQGRIFEQFTQADASITRRFGGTGLGTTIAKNLTELMGGSISLKSRAGAG 414

Query: 802 TLIEIIFPLYD----TSHPHD 818
           T   I  PL      TS P D
Sbjct: 415 TTFTINLPLSRQQPGTSEPRD 435


>gi|26000240|gb|AAN75562.1| putative sensor protein BvgS [Bordetella avium 197N]
          Length = 1112

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 107/596 (17%), Positives = 212/596 (35%), Gaps = 40/596 (6%)

Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
           E          +         E +L     + T       ++       N         S
Sbjct: 253 ESALKDGTAEMSAGLFWSEEREDTLDFSSPYLTTAFVLVGRRDTAHLPANTDLAGMRIAS 312

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364
             + P L A            V           +G + YA       T+  +   +    
Sbjct: 313 ISSSPVLEALRKHYPQSEIVLVGSPNEALLAVLNGKVDYAVQ-----TQIGANFYLSNYF 367

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
                +     +    +        D         + ++  + +  L   +      +  
Sbjct: 368 RNELAIATALNTPPVRLAFAFSRDQDELRGIIDKAITSLPADDQIYLLNRWRMETAPDIK 427

Query: 425 PENMPQNG----------------------IEPEDVDTRINKRKMEIEVMQLCSILEATS 462
              +P  G                      +  +    R+ +R +  ++  +  +++   
Sbjct: 428 HLVLPIVGEIYLLIGAGIIFCLDFLAWIYYLRRQIGKXRVAERXLSDQLAFMXVLIDGIP 487

Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV----FLEQNTPSVMNHYLTEILS 518
           + + +  REG +++ NR+  + F    + +  +          +      +   +    +
Sbjct: 488 NPVFVRXREGRMVTCNRSYLETFDVTRDAVQGRTLIDSPIGLEDPEQAKTVTSNIWTPAA 547

Query: 519 LDLRQTLEKIT-LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI 577
              R+  +    L   K      L                  D++E  +    L  AK+ 
Sbjct: 548 QQRRRFQDIEVTLHGEKRYIYHWLXXYSDSXGRVKGLIGGWTDLTERIRLLXDLHEAKEE 607

Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
           A+  +  KS FLA +SHEIRTP+ AIIG  E+   +   P               S   +
Sbjct: 608 ADAANRAKSTFLATMSHEIRTPMNAIIGMLEL---ELRRPADQATDRSALQITYDSARSL 664

Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-R 696
           LD++ D+LDISKIE+ ++ L   P  L + +   I++ Q  A +  + +        P  
Sbjct: 665 LDLIGDILDISKIEADRLELSPHPTDLRKLLDGIINVFQGLARQHGLSLTLQIDPPHPXX 724

Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQII---ISTTHTSNEEVILRVRDTGVGMTNYEL 753
           +L D   +K +   ++SNA+ FT  GG I+   + T      ++ L V D+G G+++ + 
Sbjct: 725 VLLDATRLKXVISXLVSNALKFTEVGGVIVSLKVRTXEDXRAKIELAVDDSGPGISSADR 784

Query: 754 EKAMKPFGQI-PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           ++  +PF  +   ++  R  GTGLGL +++ +++A  G F + S P KGT I+++ 
Sbjct: 785 QRLFEPFXXVHDQAKAARAAGTGLGLVISRRLIEAMGGHFDLSSIPGKGTRIDVLL 840


>gi|319901914|ref|YP_004161642.1| histidine kinase [Bacteroides helcogenes P 36-108]
 gi|319416945|gb|ADV44056.1| histidine kinase [Bacteroides helcogenes P 36-108]
          Length = 870

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 96/529 (18%), Positives = 184/529 (34%), Gaps = 29/529 (5%)

Query: 293 QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLL 351
           ++N KE+   +  +    + A   E  N   +           Y     + + N S +L+
Sbjct: 355 RSNRKEARRRIQAQTRLLIQARLVEQRNEFDDIFCSIRDGLISYDTDLRIHFVNHSLMLM 414

Query: 352 TKYKSV---DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
                              ++       ++     +      +  +   A     +  + 
Sbjct: 415 LGLSPETHTARFYEGQIAGSIFHIYVDGEDILTDLLKNACELQKAVPIPANAFMRENVQG 474

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468
               ++        +         +     +        E +       +E +S      
Sbjct: 475 IYFPVSGEVVPVFAK-GRMTGMALVCRNISEE-------ERQKRFFNMAIEESSVYPWQY 526

Query: 469 NREGIILSTNRAVSKLFGY--PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
           +           +    G+   VE +  +     +  N     +     IL   + +   
Sbjct: 527 DMSQQCFVFPAGLFHRLGHRGSVETMTLEDVRDIVHPNDREATHAIFAAILQGHMEKP-R 585

Query: 527 KITLGSTKEEKLLSLRIIIK---KLPFSSCY--SLTMHDISEWKQEKNKLSHAKKIAEKE 581
                   +               L     Y        I  +K  ++ L  A+  A + 
Sbjct: 586 MSFRVRKADGGYEWWEFRFTIYNGLTEDDPYMVLGVAQSIQRYKDTEDALITARDHAMQA 645

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
              KS FLA +SHEIRTPL AI+GFS+++K+            E+   I+ +  L+L ++
Sbjct: 646 DKLKSAFLANMSHEIRTPLNAIVGFSDLLKD--LNAFSKEEVQEFVGLINTNCTLLLALI 703

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILAD 700
           ND+LD+S+IE+G M  +    +L+  + +     Q  +  + + +R          I  D
Sbjct: 704 NDILDLSRIEAGTMEFNLAEFNLNYIMQDIYDS-QYLSMPQGVELRIECPVEEGKSIHTD 762

Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760
           +  +KQ+  N+++NA  FT  G  I I  T    E   + V DTG G+     +   + F
Sbjct: 763 IVRLKQVVNNLVNNAKKFTVQGS-ITIGYTVDEPEYTTVYVEDTGKGIPEEAAKHIFERF 821

Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            ++ N      +G GLGL + + +V+   G   +FS   +GT  E+  P
Sbjct: 822 YKVDNF----VQGAGLGLSICQTIVEHLRGTISVFSQVGRGTRFEVRMP 866


>gi|149197352|ref|ZP_01874403.1| SENSORY TRANSDUCTION HISTIDINE KINASE [Lentisphaera araneosa
           HTCC2155]
 gi|149139370|gb|EDM27772.1| SENSORY TRANSDUCTION HISTIDINE KINASE [Lentisphaera araneosa
           HTCC2155]
          Length = 1182

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 85/351 (24%), Positives = 162/351 (46%), Gaps = 23/351 (6%)

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVM------NHYLTEILSLDLRQTLEKITLGSTKEEKL 538
                E   R   ++ +  + P ++         +++     +++   +  +G ++E   
Sbjct: 448 LKISGEAPFRCDLSIGVHHDYPELVNILNKSISMISDAEHKSIKERWGRDHMGQSREHGY 507

Query: 539 LSLRIIIKKLPFSSCYSLTMHDISEWKQE---KNKLSHAKKIAEKESSHKSDFLARVSHE 595
                ++  L     +       +  KQ      +    K+ AE  ++ KS+FLA +SHE
Sbjct: 508 FWRVFLVSVLVLFVVFIWLRRLYTLNKQLLSSNKQSQELKEEAEAANTAKSEFLANMSHE 567

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           IRTP+ AIIG +++    + G     ++ EY   I +S   +L I+ND+LD SKIE+GKM
Sbjct: 568 IRTPMNAIIGLAQLGLKDKSG----EKHEEYLYKIKQSSENLLTIINDILDFSKIEAGKM 623

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715
            +   P  L+E + +    ++     + + +         +++ D   ++Q+ LN+L NA
Sbjct: 624 TMEKIPFKLNEVLEKVGGTLRGRMTNRNVDLIF-PGPLSYKLVGDPLRLEQVLLNLLGNA 682

Query: 716 IHFTPSGGQIIISTT----HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           + +T  G  +I+S         +  +   V DTG+G+++ +  +  +PF Q   S   + 
Sbjct: 683 LKYTRKG-HVILSVDEKELKEDSICLQFSVEDTGIGLSDTQRNRLFQPFAQGDTSTTRKY 741

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII----FPLYDTSHPHD 818
            GTGLGL ++K +V    G+ ++ S P KG++         PL D +   D
Sbjct: 742 GGTGLGLSISKKIVKYMGGEIWLDSMPHKGSVFCFTANFEIPLEDRTKTRD 792


>gi|78224664|ref|YP_386411.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter
            metallireducens GS-15]
 gi|78195919|gb|ABB33686.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter
            metallireducens GS-15]
          Length = 1021

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 109/761 (14%), Positives = 214/761 (28%), Gaps = 109/761 (14%)

Query: 122  SDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALP--IYSRNREFSGFR 179
            + ++       +  LL                G +  V +D    P  I    R F+G  
Sbjct: 290  AMVVWFVMGRVVAPLLSLTRHVRDMA---EKNGADRLVRVD---TPDEIGDLARAFNGM- 342

Query: 180  GFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP---HLRM 236
                    R     R   +R       L E                            R 
Sbjct: 343  -------VRKIEQQRGELERAKDFHLLLFEEFPTLIWRMGLDGRCNYLNRTWFEFTGRRS 395

Query: 237  KNKVSSLTEYYAHKDDVLKTEK-YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN 295
               +        H DD  + E  +    +  S+   +      N      +       + 
Sbjct: 396  AEALGDGWLEDIHPDDRPEVEHCFAKAFAARSAYVMEYRLLHRNGEFRWIEDNGRPFNDL 455

Query: 296  SKESFEYLSHRNHPSLSAYF----DEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLL 350
                  Y+      +          E E     TVD       +    G +   N ++  
Sbjct: 456  DGNFAGYIGFSLDITERMRAVEALRESERFARSTVDALSSHIAILDATGTIVAVNKAWRE 515

Query: 351  LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN-REN 409
                       +  G + L         +A       +  R  +   A + + +++    
Sbjct: 516  FVLANPPLSNNVNEGANYLAVCDAAVGEDAETAQSFAQGIRNVLEGKAAVFSREYSCHSP 575

Query: 410  SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL--------------- 454
                 F+                        ++ + ++     +L               
Sbjct: 576  EEKCWFVGRVTRFSGDGPPLVVVAHENVTVRKLAEEELARSREELVAKHKELKSAFLQVA 635

Query: 455  ------CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
                     L+   D + + +  G +   NRAV++L   PV++++ +P+   +       
Sbjct: 636  QGKKEWELTLDCIGDLVIMADAAGRVRRCNRAVTELARKPVDELIGRPWPEVVILPE--- 692

Query: 509  MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568
                    +  D                  L                +T+HD++E K+  
Sbjct: 693  --------VETDSYANGGGEIHHRETNRWFLLTSYPFTGTGTEKGAVITLHDVTEAKRSA 744

Query: 569  NKLSHAKKIAEKESSHK---------SDFLARVSHEIRTPLTAIIGFSEVIKN------- 612
             +L  A    ++  S               A V+HEI  P+  I      ++        
Sbjct: 745  LELEQANTELKETQSQMLQREKMASIGQLAAGVAHEINNPMGFITSNLGTLRKYGDKLLE 804

Query: 613  -QRFGPLGNPRYIEYANYIDRS-----------------------GNLVLDIVNDLLDIS 648
               F       +++    I+                            V  IV DL   S
Sbjct: 805  FMAFIAEKAESHLDLRKEIEAERRRLKIDYVADDLENLITESLEGAERVRKIVADLKSFS 864

Query: 649  KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIA 708
            +++       ++ V L E +   I++V      K   ++  +   +P +    + + Q+ 
Sbjct: 865  RVD----EAEYKVVDLTECLDSTINIVWNELKYK-ATLKKEY-GELPPLRCYPQQLNQVF 918

Query: 709  LNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
            +N+L NA H   + G+I + T       V + + D G G+ +  + +  +PF        
Sbjct: 919  MNLLVNAAHAIETQGEITVRTRSKE-GWVSIAIEDNGCGIPDDVMARIFEPFFTTK---- 973

Query: 769  IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
              G GTGLGL ++  +V  + G+  + S   KGT   +  P
Sbjct: 974  EVGRGTGLGLSISYDIVKKHGGEITVTSEQGKGTTFVVRLP 1014



 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 60/577 (10%), Positives = 161/577 (27%), Gaps = 78/577 (13%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH-IDPNNHIGDLLKRQNTW 143
             W +   G    ++    +  G  + + +G    +        +  +        ++ +
Sbjct: 370 LIWRMGLDGRCNYLNRTWFEFTGRRSAEALGDGWLEDIHPDDRPEVEHCFAKAFAARSAY 429

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +  L    G   +  I+    P    +  F+G+ GF +              +  ++ 
Sbjct: 430 VMEYRLLHRNGE--FRWIEDNGRPFNDLDGNFAGYIGFSL--DITERMRAVEALRESERF 485

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM------------KNKVSSLTEYYAHKD 251
                +    H ++      I +         +             N ++          
Sbjct: 486 ARSTVDALSSHIAILDATGTIVAVNKAWREFVLANPPLSNNVNEGANYLAVCDAAVGEDA 545

Query: 252 DVLKTEKYPLLTSEE--SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
           +  ++    +    E  +++  +E        +            +       ++H N  
Sbjct: 546 ETAQSFAQGIRNVLEGKAAVFSREYSCHSPEEKCWFVGRVTRFSGD-GPPLVVVAHENVT 604

Query: 310 SLSAYFDEGENLTPETVDK--------CPIP-----------------FFVYSHGNLFYA 344
                 +E      E V K          +                      + G +   
Sbjct: 605 VRKLAEEELARSREELVAKHKELKSAFLQVAQGKKEWELTLDCIGDLVIMADAAGRVRRC 664

Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
           N +   L   K VD++        ++     +D+ A     ++  + T        +   
Sbjct: 665 NRAVTEL-ARKPVDELIGRPWPEVVILPEVETDSYANGGGEIHHRE-TNRWFLLTSYPFT 722

Query: 405 WNR-ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE---A 460
               E    +T     +A +    + Q   E ++  +++ +R+    + QL + +     
Sbjct: 723 GTGTEKGAVITLHDVTEAKRSALELEQANTELKETQSQMLQREKMASIGQLAAGVAHEIN 782

Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK-PFTVFLEQNTPSVMNHYLTEILSL 519
              G    N  G +      + +   +  E           +E     +   Y+ + L  
Sbjct: 783 NPMGFITSNL-GTLRKYGDKLLEFMAFIAEKAESHLDLRKEIEAERRRLKIDYVADDLEN 841

Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE---------------- 563
            + ++LE    G+ +  K+++      ++  +    +   D++E                
Sbjct: 842 LITESLE----GAERVRKIVADLKSFSRVDEAEYKVV---DLTECLDSTINIVWNELKYK 894

Query: 564 --WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
              K+E  +L   +   ++ +    + L   +H I T
Sbjct: 895 ATLKKEYGELPPLRCYPQQLNQVFMNLLVNAAHAIET 931


>gi|283780478|ref|YP_003371233.1| histidine kinase [Pirellula staleyi DSM 6068]
 gi|283438931|gb|ADB17373.1| histidine kinase [Pirellula staleyi DSM 6068]
          Length = 636

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 78/254 (30%), Positives = 130/254 (51%), Gaps = 8/254 (3%)

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
           ++L+       + +  K +FLA +SHE+RTPL +IIGFSEV+           +   YA 
Sbjct: 347 DQLAQLNMRLHEMNRLKGEFLANMSHELRTPLNSIIGFSEVLA---GIDSLTDKQKRYAQ 403

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I +SG  +L+++ND+LD++K+E+GKM++      +D  +S    +V+    +K I +  
Sbjct: 404 NIQKSGRSLLEMINDILDLAKLEAGKMDVRLSEFRIDSILSAHCDMVRSLTEDKNIDLVL 463

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748
              N++P +  D   ++QI  N+LSNAI FTP GG+I +     S   + + V DTGVG+
Sbjct: 464 DIENDLPALYQDQAKLQQILTNLLSNAIKFTPEGGRITVGAKGDSRGFIEMYVSDTGVGI 523

Query: 749 TNYELEKAMKPFGQ-----IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
            + + E   + F Q       ++      GTGLGL + K +     G+  + S   +G+ 
Sbjct: 524 ADADKEIIFEKFRQGTAVLGRDNLTREYSGTGLGLSIVKELCKLLGGEVSVESELGRGST 583

Query: 804 IEIIFPLYDTSHPH 817
             +  P      P 
Sbjct: 584 FRVTIPWMRADQPQ 597


>gi|269795552|ref|YP_003315007.1| signal transduction histidine kinase [Sanguibacter keddieii DSM
           10542]
 gi|269097737|gb|ACZ22173.1| signal transduction histidine kinase [Sanguibacter keddieii DSM
           10542]
          Length = 576

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 82/418 (19%), Positives = 167/418 (39%), Gaps = 45/418 (10%)

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINREGIIL 475
              +A     +           + R ++ +      QL  + +A ++  I   +  G I 
Sbjct: 175 ADARATVAQRDSLLVDAVRASAEARSSETRATAVSRQLSGLWDAVTEQAIIGTDLTGRID 234

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--------- 526
           S N    K+ G    +         L      V       + ++     L+         
Sbjct: 235 SWNPGACKMLGVAQHEA----LEAGLVITDVHVAEELRERVAAVGDSTPLDAQAALTALV 290

Query: 527 ----------KITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLS 572
                     +       ++  L +++   +          Y     D+++ ++ +    
Sbjct: 291 RDVGPGSADVREWTYVRPDDSRLPVQVAATQRIGDDDAVVGYLFVATDMTKAREFE---- 346

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
                       K +F+  +SHE+RTPL++I+G+ E+++++  GPL      +Y +  +R
Sbjct: 347 ----------RLKDEFVGMISHELRTPLSSILGYLELLRDEEDGPLTAE-QTQYLDVAER 395

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
           +   +L +V DLL  +++E+G+  +  +   L+  +  A    +  A    + +R     
Sbjct: 396 NAQRLLRLVGDLLFTAQVEAGRFPIVHQSTELESVLRAAAQTFEPVAAAASVRLRVVMDE 455

Query: 693 NIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751
           ++  +   D   + Q   N+LSNA+ F+P+GGQ+ +S          + VRDTG+G+ + 
Sbjct: 456 SLSTVVRGDATRLGQAVDNLLSNAVKFSPAGGQVTLSLVAHDE-RATITVRDTGIGIPDT 514

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           EL++    F +   +      G GLGL + KA+V A+ G+  + S    GT   +  P
Sbjct: 515 ELDQLTTRFFRASTATSASVPGIGLGLAITKAIVVAHRGRLDVTSEVGIGTAFTVDLP 572



 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/242 (10%), Positives = 60/242 (24%), Gaps = 20/242 (8%)

Query: 237 KNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS 296
            ++   L          L    +  L     +L   E    +              Q +S
Sbjct: 129 TSQGPGLLLTDLRSTSDLVRVLFSPLVYGLVALVINEIARRL--RLQLADARATVAQRDS 186

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV--YSHGNLFYANPSFLLLTKY 354
                  +     S                D       +     G +   NP    +   
Sbjct: 187 LLVDAVRASAEARSSETRATAVSRQLSGLWDAVTEQAIIGTDLTGRIDSWNPGACKMLGV 246

Query: 355 KSVDDIEIAGGLSTLLDAPKLSDN----------NAIKPVMLYRSDRTCIAASARLHTIQ 404
              + +E    ++ +  A +L +           +A   +     D    +A  R  T  
Sbjct: 247 AQHEALEAGLVITDVHVAEELRERVAAVGDSTPLDAQAALTALVRDVGPGSADVREWTYV 306

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE-----VMQLCSILE 459
              ++ L +     ++       +    +  +    R  +R ++ E       +L + L 
Sbjct: 307 RPDDSRLPVQVAATQRIGDDDAVVGYLFVATDMTKAREFER-LKDEFVGMISHELRTPLS 365

Query: 460 AT 461
           + 
Sbjct: 366 SI 367



 Score = 47.7 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 30/257 (11%), Positives = 67/257 (26%), Gaps = 24/257 (9%)

Query: 89  IDAHGYLKEISEELPKTIG---------------NYAFKMIGMRLCDVSDILHIDPNNHI 133
            D  G +   +    K +G                +  + +  R+  V D   +D    +
Sbjct: 227 TDLTGRIDSWNPGACKMLGVAQHEALEAGLVITDVHVAEELRERVAAVGDSTPLDAQAAL 286

Query: 134 GDLLKRQNTWYGKTTLW-PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192
             L++           W  +   +  +P+ +AA      +    G+          +   
Sbjct: 287 TALVRDVGPGSADVREWTYVRPDDSRLPVQVAATQRIGDDDAVVGYLFVAT----DMTKA 342

Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD 252
                 + +      HE++   SS+      +  ++  P        +    +       
Sbjct: 343 REFERLKDEFVGMISHELRTPLSSILGYLELLRDEEDGPLTAEQTQYL----DVAERNAQ 398

Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
            L      LL + +         H     +   +    T +  +  +   L      SLS
Sbjct: 399 RLLRLVGDLLFTAQVEAGRFPIVHQSTELESVLRAAAQTFEPVAAAASVRLRVVMDESLS 458

Query: 313 AYFDEGENLTPETVDKC 329
                      + VD  
Sbjct: 459 TVVRGDATRLGQAVDNL 475


>gi|124002791|ref|ZP_01687643.1| multi-sensor Signal Transduction Histidine Kinase [Microscilla
           marina ATCC 23134]
 gi|123992019|gb|EAY31406.1| multi-sensor Signal Transduction Histidine Kinase [Microscilla
           marina ATCC 23134]
          Length = 629

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 94/588 (15%), Positives = 196/588 (33%), Gaps = 25/588 (4%)

Query: 233 HLRMKNKVSSLTEYYAHKDD-VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291
             R +  V  +     H DD      K+ +    E            +      K     
Sbjct: 48  GYRPEEMVGKMPCDLVHPDDLPSLKTKFDIAHQNEGYTTFVYRIRRKDHEFIWFKTLNKV 107

Query: 292 LQNNSKESFEYL-----SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYAN 345
           +++      + +         +        E E       +  PI   +   HG L   N
Sbjct: 108 IRDAKNHEIKEILCVSKDISKNKKYETDIIESEARFRRAFEFAPIGMALVDIHGRLIRVN 167

Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405
            S   +      + IE    L   +   +   + A     + +S++       RL T + 
Sbjct: 168 RSLCKMLNANEDELIEE--MLYNFVHPKEGHLSFAAIQQHIEQSEQEHYQTELRLLTQK- 224

Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465
             +  ++         N+    +            +  +  +        +I++  ++ +
Sbjct: 225 --QGVVSAILSMSLVKNRENAPLHYICHLQNITKRKQTEEALLNSERLYRAIVQTETELV 282

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
                +G +   N A    F    ++++       + +   + +   +  I   +    L
Sbjct: 283 CRFTTDGQLTFVNDAYCHYFKKTCDELVGTTLLPPIPEEDRNKIEKAIKSITPENEIVNL 342

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSC---YSLTMHDISEWKQEKNKLSHAKKIAEKES 582
           +   +   +E    +          S     Y     DI+  K+ + +L    +  E  +
Sbjct: 343 DFRIVL-NQEIHWHNWSFCGIFDQNSGQLMSYQAVGRDITRNKRNEQQLIKKTQELETAN 401

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
                F   VSH++R PL +I GFS+++    +  + +         I  +   + ++++
Sbjct: 402 KEMESFSYSVSHDLRAPLRSIDGFSKILAED-YAEVLDEEGKRLLGIISDNSKQMAELID 460

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702
           DLL  S++   +  +      + E V E I             I       +  I +D+ 
Sbjct: 461 DLLAFSRV--SRKEVKKNTFDMSELVKEIIHDFTRLGEHTESQITVY---PLNHIKSDMA 515

Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHT-SNEEVILRVRDTGVGMTNYELEKAMKPFG 761
            +KQ+ +N++SNA+ F+ +    +I       N      ++D GVG       K    F 
Sbjct: 516 MLKQLWINLISNALKFSKNSCPPMIEIGQKYINGTCAYYIKDNGVGFDMRYAHKVFGVFQ 575

Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           ++   ++    GTG+GL +   +V  N GK ++ S P KGT      P
Sbjct: 576 RLH--RKEEFAGTGVGLAIVHRIVTKNKGKIWVESVPNKGTQFYFTLP 621



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/381 (9%), Positives = 95/381 (24%), Gaps = 32/381 (8%)

Query: 93  GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN---HIGDLLKRQNTWYGKTTL 149
           G    +S      +G    +M+G   CD+     +        I    +   T+      
Sbjct: 34  GECSYVSPRCFHLLGYRPEEMVGKMPCDLVHPDDLPSLKTKFDIAHQNEGYTTF----VY 89

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
                 + ++        I              +      +          + +F    E
Sbjct: 90  RIRRKDHEFIWFKTLNKVIRDAK-NHEIKEILCVSKDISKNKKYETDIIESEARFRRAFE 148

Query: 210 IKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLKTEK---YPLLT 263
                 ++      +           +      +  +   + H  +   +       +  
Sbjct: 149 FAPIGMALVDIHGRLIRVNRSLCKMLNANEDELIEEMLYNFVHPKEGHLSFAAIQQHIEQ 208

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL----SHRNHPSLSAYFDEGE 319
           SE+     +    T      +       ++N       Y+    +              E
Sbjct: 209 SEQEHYQTELRLLTQKQGVVSAILSMSLVKNRENAPLHYICHLQNITKRKQTEEALLNSE 268

Query: 320 NLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
            L    V         + + G L + N ++    K    + +    G + L   P+   N
Sbjct: 269 RLYRAIVQTETELVCRFTTDGQLTFVNDAYCHYFKKTCDELV----GTTLLPPIPEEDRN 324

Query: 379 NAIKPVMLYRSDRTCIAASARL---HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
              K +     +   +    R+     I W+  +   +            + M    +  
Sbjct: 325 KIEKAIKSITPENEIVNLDFRIVLNQEIHWHNWSFCGIF------DQNSGQLMSYQAVGR 378

Query: 436 EDVDTRINKRKMEIEVMQLCS 456
           +    + N++++  +  +L +
Sbjct: 379 DITRNKRNEQQLIKKTQELET 399



 Score = 48.1 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/133 (11%), Positives = 40/133 (30%), Gaps = 7/133 (5%)

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
              + + ++D I+     G     +     L GY  E+++ K     +  +    +    
Sbjct: 16  YRLLADNSNDLISRHTITGECSYVSPRCFHLLGYRPEEMVGKMPCDLVHPDDLPSLKTKF 75

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSL-----RIIIKKLPFSSCYSLTMHDISEWKQEK 568
              ++         +     K+ + +        I   K            DIS+ K+ +
Sbjct: 76  D--IAHQNEGYTTFVYRIRRKDHEFIWFKTLNKVIRDAKNHEIKEILCVSKDISKNKKYE 133

Query: 569 NKLSHAKKIAEKE 581
             +  ++    + 
Sbjct: 134 TDIIESEARFRRA 146



 Score = 42.3 bits (98), Expect = 0.37,   Method: Composition-based stats.
 Identities = 30/263 (11%), Positives = 74/263 (28%), Gaps = 12/263 (4%)

Query: 73  TFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI-LHIDPNN 131
            F F PI   +     +D HG L  ++  L K +     ++I   L +            
Sbjct: 146 AFEFAPIGMAL-----VDIHGRLIRVNRSLCKMLNANEDELIEEMLYNFVHPKEGHLSFA 200

Query: 132 HIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN 191
            I   +++    + +T L  +      V   L+   + +R      +     +       
Sbjct: 201 AIQQHIEQSEQEHYQTELRLLTQKQGVVSAILSMSLVKNRENAPLHY--ICHLQNITKRK 258

Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP---PPHLRMKNKVSSLTEYYA 248
                    ++ +  + + +            +                  V +      
Sbjct: 259 QTEEALLNSERLYRAIVQTETELVCRFTTDGQLTFVNDAYCHYFKKTCDELVGTTLLPPI 318

Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYF-GTLQNNSKESFEYLSHRN 307
            ++D  K EK     + E+ +   +    +N   +     F G    NS +   Y +   
Sbjct: 319 PEEDRNKIEKAIKSITPENEIVNLDFRIVLNQEIHWHNWSFCGIFDQNSGQLMSYQAVGR 378

Query: 308 HPSLSAYFDEGENLTPETVDKCP 330
             + +   ++      + ++   
Sbjct: 379 DITRNKRNEQQLIKKTQELETAN 401


>gi|196228612|ref|ZP_03127478.1| PAS/PAC sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
 gi|196226893|gb|EDY21397.1| PAS/PAC sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
          Length = 1194

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 104/662 (15%), Positives = 225/662 (33%), Gaps = 50/662 (7%)

Query: 185 HVNRVDNDPRALGKR-LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL 243
                     A+ +   ++    L   + G      +  ++F  Q     L   ++  + 
Sbjct: 304 REVAQRKQTEAVLRETEERWNFALEGSRDGVWDWNVKTNEVFFSQRWKTMLGFTDEELAN 363

Query: 244 TEYYAHKD------DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL-QNNS 296
                         D         L  E      +      + +          + ++  
Sbjct: 364 RLDEWTSRVHPDDLDRTLDAVQQHLRGETPDYKVEHRVRAKDGSYRWILARGQVVTRDEK 423

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVDKC-----PIPFFVYSHGNLFYANPSFLLL 351
                 +      +     ++      E  ++       +   +   GN    N +   +
Sbjct: 424 GAPTRMVGTHTDITQRRQSEQTIRSAKEFAEELIQTTNAMVVGLDKAGNFTIFNRAAEEI 483

Query: 352 TKYKSVDDIEIAGGLSTLLDA-----------PKLSDNNAIKPVMLYRSDRTCIAASARL 400
           T Y   ++++      TL+             P+           +            + 
Sbjct: 484 TGYT-FEELKGRNCWETLVPRDRFPEVVAAIGPESPGLRPRYENPILTKSGEERFIVWQN 542

Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
             I+   E    ++F       +  E   +   E  +   R    ++E    +L  +   
Sbjct: 543 GVIREGGEEVGTVSFGIDITDRRRAEQELRRNEEQLEETVRRRTSELEQAERRLREVTNR 602

Query: 461 TSDGIAII----NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
               +       +        +  +  + G    D +R   TV+   +   +    +   
Sbjct: 603 IPGAVYQFVRRTDGSFAFEFCSEGMGDMLGVSSADAVRDVETVWAVIHPDDLTALVVQAN 662

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---YSLTMHDISEWKQEKNKLSH 573
            S +     E+       + +   +R   +          ++ ++ DI+E K  + +L+ 
Sbjct: 663 ESAERMTRYEQDLRIQQPDGRRWWIRAESEPQRRPDGSTLWNGSIMDITERKSLEEQLAV 722

Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
           AK  AE  +  KS FLA +SHEIRTP+ AI+GFS+++              +  + I+RS
Sbjct: 723 AKSAAEAANQAKSAFLANMSHEIRTPMNAILGFSQLLLRD---TALTAVQRQNLDTINRS 779

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693
           G  +L ++ND+L++SKIE+G++ +H     L   + +   + +L  + +R+      A +
Sbjct: 780 GEHLLTLINDVLEMSKIEAGRVTVHSSNFDLHALLDDLDRMFRLRTDARRLHFSIERATD 839

Query: 694 IPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVIL--RVRDTGVGMT 749
           +P+ + AD   ++QI  N++ NA  FT  GG  + +  T    + + L   V DTG G+ 
Sbjct: 840 LPQYVKADEGKLRQIFTNLIGNAAKFTEQGGIAVRVKATPIGGQSLRLHAEVEDTGPGIA 899

Query: 750 NYELEKAMKPFGQIPN-----SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           + ++ +  + F Q  +          G        +++       G   + S   +GT  
Sbjct: 900 DEDMPRLFREFEQTESGLRTGGGTGLGL------AISRRFARLMGGDIGVESIRGRGTTF 953

Query: 805 EI 806
            +
Sbjct: 954 SV 955



 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 40/402 (9%), Positives = 109/402 (27%), Gaps = 17/402 (4%)

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
            L    +++ ++     ++++            P+              A     L  + 
Sbjct: 194 ALGDADAYVGDLASATQAIDRLGIRNLKVAGESPYQFPFRIAVRKDWPEAV---ALLNKA 250

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP--SLSAYFD 316
              +T EE +    +     +     ++     L          L   N       A   
Sbjct: 251 IATITPEEHAAIHHKWIVMRSEGLSWERVLIYALPILIGSVVLTLLMANRRLSREVAQRK 310

Query: 317 EGENLTPETVDKCPIPFFVYSHGNL--------FYANPSFLLLTKYKSVDDIEIAGGLST 368
           + E +  ET ++          G           + +  +  +  +   +        ++
Sbjct: 311 QTEAVLRETEERWNFALEGSRDGVWDWNVKTNEVFFSQRWKTMLGFTDEELANRLDEWTS 370

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
            +    L          L                   +      +        ++     
Sbjct: 371 RVHPDDLDRTLDAVQQHLR---GETPDYKVEHRVRAKDGSYRWILARGQVVTRDEKGAPT 427

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
              G   +    R +++ +         +++ T+  +  +++ G     NRA  ++ GY 
Sbjct: 428 RMVGTHTDITQRRQSEQTIRSAKEFAEELIQTTNAMVVGLDKAGNFTIFNRAAEEITGYT 487

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            E++  +     L                S  LR   E   L  + EE+ +  +  + + 
Sbjct: 488 FEELKGRNCWETLVPRDRFPEVVAAIGPESPGLRPRYENPILTKSGEERFIVWQNGVIRE 547

Query: 549 PFSS-CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
                       DI++ ++ + +L   ++  E+    ++  L
Sbjct: 548 GGEEVGTVSFGIDITDRRRAEQELRRNEEQLEETVRRRTSEL 589



 Score = 42.7 bits (99), Expect = 0.28,   Method: Composition-based stats.
 Identities = 55/521 (10%), Positives = 122/521 (23%), Gaps = 24/521 (4%)

Query: 36   TEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYL 95
            T++ + E     + EQ   T + + S                P     +F    D     
Sbjct: 562  TDRRRAEQELRRNEEQLEETVRRRTSELEQAERRLREVTNRIPGAV-YQFVRRTDGSFAF 620

Query: 96   KEISEELPKTIGNYAFKMIG--MRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIE 153
            +  SE +   +G  +   +     +  V     +     +      +     +  L   +
Sbjct: 621  EFCSEGMGDMLGVSSADAVRDVETVWAVIHPDDLTA-LVVQANESAERMTRYEQDLRIQQ 679

Query: 154  GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
                   I   + P    +         G +                       ++ K  
Sbjct: 680  PDGRRWWIRAESEPQRRPDGS---TLWNGSIMDITERKSLEEQLAVAKSAAEAANQAKSA 736

Query: 214  HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE 273
              +    +       +     ++  + ++LT       D +      LLT     + +  
Sbjct: 737  FLANMSHEIRT-PMNAILGFSQLLLRDTALTAVQRQNLDTINRSGEHLLT----LINDVL 791

Query: 274  DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF 333
            +   I   + T       L     +       R       +  E     P+ V K     
Sbjct: 792  EMSKIEAGRVTVHSSNFDLHALLDDLDRMFRLRTDARRLHFSIERATDLPQYV-KADEGK 850

Query: 334  FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD------APKLSDNNAIKPVMLY 387
                  NL      F               GG S  L        P ++D +  +    +
Sbjct: 851  LRQIFTNLIGNAAKFTEQGGIAVRVKATPIGGQSLRLHAEVEDTGPGIADEDMPRLFREF 910

Query: 388  RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
                + +                  +        +        +     +       R  
Sbjct: 911  EQTESGLRTGGGTGLGLAISRRFARLMGGDIGVESIRGRGTTFSVEVQVEEGEAAAVRAR 970

Query: 448  EIEVMQLCSILEATSDG--IAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQN 504
              +   L   L+A SDG  + I + +         + +  G+    +             
Sbjct: 971  ADQRRVLH--LDAASDGMRVLIADDKAENRLFLEQLLQPLGFRTRSVADGAQAVKVFAAW 1028

Query: 505  TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
             P ++   L   +        +   L   KE  ++++    
Sbjct: 1029 RPRLVLIDLRMPVLSGDEAIRQMRALSDGKEVAIITITASA 1069


>gi|262167284|ref|ZP_06034994.1| BarA sensory histidine kinase [Vibrio cholerae RC27]
 gi|262024259|gb|EEY42950.1| BarA sensory histidine kinase [Vibrio cholerae RC27]
          Length = 916

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 84/317 (26%), Positives = 147/317 (46%), Gaps = 14/317 (4%)

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568
           ++      L + +   +        K    +++ +    +           D+ E  ++ 
Sbjct: 200 VDRIRRGHLDVRIEGKMHGELDTLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQL 259

Query: 569 N----KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
                +L  AKK A++ +  KS+FLA +SHE+RTPL  +IGF+  +   +          
Sbjct: 260 EIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTN----SQA 315

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           +Y   I++S N +L I+ND+LD SK+E+GK+ L   P    E + E ++L    A+EK +
Sbjct: 316 DYLQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGL 375

Query: 685 LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT----SNEEVIL 739
            I       IPR ++ D   ++Q+  N++ N+I FT  G  I +S           ++  
Sbjct: 376 EITLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERG-NIDVSVEMRALRDDVIDLQF 434

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            VRDTG+G++  +  +  + F Q   S   R  GTGLGL + + +V    G+  + S   
Sbjct: 435 MVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLH 494

Query: 800 KGTLIEIIFPLYDTSHP 816
           +G+       L+ T  P
Sbjct: 495 QGSTFWFTLRLHTTELP 511


>gi|289579383|ref|YP_003478010.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter italicus Ab9]
 gi|289529096|gb|ADD03448.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter italicus Ab9]
          Length = 470

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 61/248 (24%), Positives = 125/248 (50%), Gaps = 6/248 (2%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E  +     +   K  E+    + DF+A VSHE+R+PLT+I G+ + I +   G +   +
Sbjct: 226 EIGELAKSFNVMAKELEQLEDMRKDFVANVSHELRSPLTSIQGYIDGILD---GTIPVEK 282

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             +Y   + +    +  +++D L+++K+ESG+  LH     ++E +  A+   +    EK
Sbjct: 283 ACDYLKIVQKETRRMSRLIDDFLEMTKLESGQFPLHKTEFDINELIRLAVIKFEKRIVEK 342

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
            + ++  F  +   ++AD   ++Q+  N++ NAI F+   G I I T    + +V + ++
Sbjct: 343 DLTVKVDFEEDRRIVIADKDKIEQVLSNLIDNAIKFSKEKGIIHIFTETKDD-KVFITIK 401

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G+G++  + E     F +   S+    +G GLGL + K +++A+  + ++ S   +G 
Sbjct: 402 DNGIGISPEDQEHIWDRFYKADKSRGK--DGAGLGLYIVKRIINAHNEEIWVESKIGRGA 459

Query: 803 LIEIIFPL 810
                 P+
Sbjct: 460 AFTFTLPV 467


>gi|227538418|ref|ZP_03968467.1| sensor histidine kinase/response regulator fusion protein
           [Sphingobacterium spiritivorum ATCC 33300]
 gi|227241700|gb|EEI91715.1| sensor histidine kinase/response regulator fusion protein
           [Sphingobacterium spiritivorum ATCC 33300]
          Length = 1138

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 76/258 (29%), Positives = 138/258 (53%), Gaps = 4/258 (1%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  + +  ++      E+ S +KS+F+A +SHE+RTPL +I+  ++++K+ +   L    
Sbjct: 462 DLDKARKNITDKINEVEQASKYKSEFMANMSHELRTPLNSILILAKLLKDNKHHNLNTD- 520

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
            I+YA  I  +G+ +L ++N+LLD++KIESG+++L  + + +         L ++ A EK
Sbjct: 521 QIKYATVIHSAGSDLLHLINELLDLAKIESGQIDLVEDHIDIHSLTRNIEGLFRISAEEK 580

Query: 683 RILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
            I  +T+     P   L D   ++Q+  N+LSNA  FT +GG+I ++  H  N  +   V
Sbjct: 581 SINFKTTIDPEAPSTFLCDEYRLEQVLKNLLSNAFKFTLNGGKIELAYKHV-NSNIHFIV 639

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
           +D G+G+   + +   + F Q   S   +  GTGLGL + + +     G+  + S P KG
Sbjct: 640 QDDGIGIAPEKQKLIFEAFKQEDGSTSRKYGGTGLGLSICRELATLLGGRISLESEPDKG 699

Query: 802 TLIEIIFPLYDTSHPHDC 819
           +    I P Y  +  +D 
Sbjct: 700 STFTFILP-YRPAQKNDI 716


>gi|242278839|ref|YP_002990968.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           salexigens DSM 2638]
 gi|242121733|gb|ACS79429.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           salexigens DSM 2638]
          Length = 756

 Score =  291 bits (744), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 76/521 (14%), Positives = 178/521 (34%), Gaps = 44/521 (8%)

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAG 364
           R          E +    +  D  P    V   +  +   N ++                
Sbjct: 262 RQVQEKHRALLEQKEEYRDLFDNVPCLVSVVDLNFKVIRHNKAYEKHFGKPR-------- 313

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
                        +   +   + R+        +    +  + +    + +      ++ 
Sbjct: 314 --GRQCYQINKDRDRKCEECPVERTFFDLTPHMSEESGLSKDGKPIHWIVYTS-PIKDRE 370

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSK 483
            + +    +  +    +  +  +    ++  +I ++    + +++  +  IL+ N  V +
Sbjct: 371 GKIVAAMEMMLDITRRKELEESLAASELRYHAIFDSIPQAVFVLDAEDLTILNCNDPVEE 430

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           ++GY  + IL   F     +   +   H +     +     L       +       LRI
Sbjct: 431 IYGYSRDMILGSSFLKLFREEEQNDYEHLIKVRKEIGPCSHL-----TKSGNTIYAMLRI 485

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
              +   +    +T  D+++  + + +L  A K++        +  + V+HE+  PL  +
Sbjct: 486 SPAEFDGNRTLIVTCSDVTQKLEAEQQLIQASKMST-----LGEMASGVAHELNQPLAIL 540

Query: 604 IGFSEVIKN--QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
              S ++     R   +      E A  +D   N    I+  + +  +    K ++   P
Sbjct: 541 KTISNLLMRKVTRNQQVEPKVLKEMAEGVDTHVNRASKIIEHMREFGR----KSDMKTMP 596

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           V +++ +             + I +  +  +++P I AD   ++Q+ +N+L NA      
Sbjct: 597 VQVNDVLRRGFDFFSRQLTLRNISVEWNLNSHLPIIKADSNRLEQVVINLLINARDAIEE 656

Query: 722 ----------GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
                       +I I+T  T    V++ + DTG G+ +    +  +PF    +     G
Sbjct: 657 RWKDSVPLADNKKIYITTDFTDEN-VVIEICDTGPGIPDPIQTRLFEPFFTTKD----VG 711

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
           +GTGLGL ++  ++    G     +    G    I FP  D
Sbjct: 712 KGTGLGLSISYGIIKDYNGTISASTKEDLGACFTITFPRGD 752


>gi|328470983|gb|EGF41894.1| hypothetical protein VP10329_09312 [Vibrio parahaemolyticus 10329]
          Length = 878

 Score =  291 bits (744), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 83/266 (31%), Positives = 135/266 (50%), Gaps = 16/266 (6%)

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
               + E +++ +++ HAK+ A   +  KS FLA +SHEIRTPL  I+G +E++      
Sbjct: 351 VNRVVEEKQRQTHEILHAKESAVAANRAKSVFLANMSHEIRTPLNGIMGMTEILSQSELS 410

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
           P       E  + ID S + +L ++ND+LD+SKIESG++ L      + E V +++ L Q
Sbjct: 411 P----HQQEVVDDIDTSSHTLLALLNDILDLSKIESGRLELSLVEADIREVVYQSVILFQ 466

Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS-- 733
             A  K++ +  S   NIP R++ D   +KQI  N++SNA+ FT  G  I +  ++    
Sbjct: 467 SKATSKQLELDISLDENIPARVMVDDHRIKQIITNLVSNAVKFTEQG-YISVDVSYEEAL 525

Query: 734 ---NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
                 +   ++D+G+G+   +L    +PF Q       +  GTGLGL + + +V    G
Sbjct: 526 EQGRGSLTFLIKDSGIGIERDKLATIFEPFTQEDEGVSRQFGGTGLGLAICRQLVSMMGG 585

Query: 791 KFYIFSTPAKGTLIEII-----FPLY 811
           K    ST   GT           PL+
Sbjct: 586 KLVATSTKGVGTCFGFSIEVEALPLF 611


>gi|325104431|ref|YP_004274085.1| multi-sensor hybrid histidine kinase [Pedobacter saltans DSM 12145]
 gi|324973279|gb|ADY52263.1| multi-sensor hybrid histidine kinase [Pedobacter saltans DSM 12145]
          Length = 1146

 Score =  291 bits (744), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 77/248 (31%), Positives = 129/248 (52%), Gaps = 3/248 (1%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           + +  KN LS   +  E+ S +KS+FLA +SHE+RTPL +I+  ++++K  + G L    
Sbjct: 468 QIESAKNTLSIKMQELEQASKYKSEFLANMSHELRTPLNSILILAKILKENKKGHLSEDE 527

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
              YA+ I R+G  +L ++ND+LD+SKIESG + L+ E +S+ +   +   L    AN K
Sbjct: 528 TK-YASVIHRAGGDLLSLINDILDLSKIESGFIELNPENLSVADLEDDLKQLFDEVANTK 586

Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
            +         +P  I  D   ++QI  N+LSNA  FT   G + +  +   ++ +   V
Sbjct: 587 GVNFVIERDPKLPETIYVDRLRIEQILKNLLSNAFKFTSKEGTVSVHMS-EKDDFLRFSV 645

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
           +DTG+G+   + +   + F Q   S      GTGLGL +++ +     G   + S   KG
Sbjct: 646 KDTGIGIPEDKQKIIFEAFQQADGSTNREYGGTGLGLSISRELSKLMDGHISLKSEVGKG 705

Query: 802 TLIEIIFP 809
           +   +  P
Sbjct: 706 SEFTLNIP 713


>gi|226312005|ref|YP_002771899.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC
           100599]
 gi|226094953|dbj|BAH43395.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC
           100599]
          Length = 594

 Score =  291 bits (744), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 90/539 (16%), Positives = 182/539 (33%), Gaps = 63/539 (11%)

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP--FFVYSHGNLFYANPSFLLL 351
                  E       P      +    LT     K P     ++  + +    N    LL
Sbjct: 89  GKQVSMSEGAGLPRIPINLLLQNPALGLTDALAGKHPATKTIYIDVNKSADRTNNKHELL 148

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411
                ++      G   +  A +  D+   +   L          S  +     +   + 
Sbjct: 149 AVAVPLEMGAGKTGAVVMYQAIEDFDDTVREVRFLIFVVGVIGFVSTTVFAFFLSSRIAT 208

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR--------------KMEIEVMQLCSI 457
            +  +          +           +T                    +  E  QL S+
Sbjct: 209 PLRQMKETAHRIAEGDFHAEIPIRTQDETGELAASFNTMASKLNQLVDALSKEKEQLASV 268

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
           L +  DG+ +I+  G +  TN    +       +   +P            +  +  ++L
Sbjct: 269 LRSMVDGVVMIDANGKLAVTNPPAERFLRDWDFEHSDEPV----------PLFPFYQQVL 318

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISEWKQEKNKLSHAKK 576
                 T +        + ++ S+ ++              + DI++ ++          
Sbjct: 319 QTGQEVTEDIPV-----QGRIWSVVMVPLNDKDQIRGAVAVLRDITQERKL--------- 364

Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
                   ++DF+A VSHE+RTPL+ + G+SE I +          + E A  I      
Sbjct: 365 -----DKMRNDFVANVSHELRTPLSMLQGYSEAIVDDIVAT--PEEHKELAQIIYDESAR 417

Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696
           +  +VN+LL ++++E+G + L  E + L   +          A E+ I +    +     
Sbjct: 418 MTKLVNELLSLARMEAGHVELFQETMELRPYLERIQRKFTNLAREREIHLFLEISTTHTH 477

Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKA 756
           +L D   ++Q+  N++ NA+  TPSGG + I      ++ +++ + DTG G+   +L   
Sbjct: 478 VLIDPDRMEQVLTNLIDNALRHTPSGGSVTIRA--RGDKTLLVEISDTGSGIPQEDLPFV 535

Query: 757 MKPFGQIPNS-------QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            + F +   +           G        +AK +V+A+ G   + S   +GT   I  
Sbjct: 536 FERFYKADKARTRGRLGGTGLGL------AIAKNLVEAHGGTINVQSKLGEGTTFTIAL 588


>gi|153870999|ref|ZP_02000277.1| Signal transduction histidine kinase [Beggiatoa sp. PS]
 gi|152072537|gb|EDN69725.1| Signal transduction histidine kinase [Beggiatoa sp. PS]
          Length = 673

 Score =  291 bits (744), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 97/268 (36%), Positives = 140/268 (52%), Gaps = 12/268 (4%)

Query: 559 HDISEWKQEKNKL-------SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
            +I E +Q +  L        HA++ AE  +  KS FLA +SHE+RTPL AIIG+SE+++
Sbjct: 148 QEIVERQQIEKALSEAKEIAEHARQEAETANITKSQFLANMSHELRTPLNAIIGYSEILR 207

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
                 L    +I     ID +G  +L ++ND+LD+SKIESGKM+L  EPV+LD  + + 
Sbjct: 208 EDAED-LEQEDFIPDLKKIDTAGRHLLGLINDVLDLSKIESGKMDLLIEPVNLDMLIDKV 266

Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
           +  VQ    +K  L++      + +I  D+  + QI LN+LSNA  FT  G  I     H
Sbjct: 267 LGTVQPLIEKKANLLKIERPTVLGKIQTDMTKLCQILLNLLSNAAKFTEQG-IIEFQIYH 325

Query: 732 ---TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
              T  ++VI  V D G+GMT  + EK   PF Q  +S   R  GTGLGL + K   +  
Sbjct: 326 QINTEGDKVIFCVTDNGIGMTEKQQEKLFHPFTQADSSTTRRYGGTGLGLTITKDFAEMM 385

Query: 789 MGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
            G   + S    G+   +  P+     P
Sbjct: 386 GGHIKVASDFGFGSTFTLSLPIQAKITP 413


>gi|219847497|ref|YP_002461930.1| PAS/PAC sensor signal transduction histidine kinase [Chloroflexus
           aggregans DSM 9485]
 gi|219541756|gb|ACL23494.1| PAS/PAC sensor signal transduction histidine kinase [Chloroflexus
           aggregans DSM 9485]
          Length = 416

 Score =  291 bits (744), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 71/410 (17%), Positives = 155/410 (37%), Gaps = 15/410 (3%)

Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465
              +   +  +     N         G++ +    +  + ++E   +   S++E     +
Sbjct: 4   PDGSIRWLLAVGQPIRNADGSLRGIAGLQIDITARKQIEAELERSELYYRSLVEDLPAMV 63

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
                +G +   N+   + F     +++   F   +  +  + +   + ++         
Sbjct: 64  CRFRPDGTLTFVNQLYCEAFKRSRAELIGFNFYDLIPLSQRAAVAAGIAQLSVARPVMVH 123

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
           E   +              +     S    Y     DI++ K+ + +           + 
Sbjct: 124 EHEVIHPDGSIGWQRWINRLLLTTDSEPVEYQALGIDITDRKRAEIEREQLIAELAARNE 183

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
               F   VSH++++PL  I GF+  I+          R  +    I  + + +  ++ D
Sbjct: 184 TLEQFSYTVSHDLKSPLITIKGFAGYIQQD-LRAGKLDRIPDDLQRIIAAADRMHQLLED 242

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703
           LL ++  ++G+     E + L   + EA + V     E+ +L+      N+P ++ D   
Sbjct: 243 LLHLA--QAGRQLSTPERIKLSVLIGEAAAAVSARLAERNVLLHV--PPNLPEVIGDRTR 298

Query: 704 VKQIALNILSNAIHFT--PSGGQIIISTTHTSN-EEVILRVRDTGVGMTNYELEKAMKPF 760
           ++++  N+L NA  F       QI I      N   +++ V D G+G+     ++    F
Sbjct: 299 LREVFQNLLDNAAKFMGDQPSPQIWIEAQPAENPNFLLVSVHDNGIGIDPRHHQRIFGLF 358

Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFP 809
            ++      R EGTG+GL L + +V+A+ GK ++ S    +GT      P
Sbjct: 359 ERLDQ----RIEGTGIGLTLVRKIVEAHGGKIWVQSDGLGQGTTFYFTLP 404



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/184 (9%), Positives = 48/184 (26%), Gaps = 12/184 (6%)

Query: 278 INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL----SAYFDEGENLTPETVDKCPIPF 333
            + +          ++N           +   +      A  +  E      V+  P   
Sbjct: 4   PDGSIRWLLAVGQPIRNADGSLRGIAGLQIDITARKQIEAELERSELYYRSLVEDLPAMV 63

Query: 334 FVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
             +   G L + N  +    K    + +        +  + + +    I  + + R    
Sbjct: 64  CRFRPDGTLTFVNQLYCEAFKRSRAE-LIGFNFYDLIPLSQRAAVAAGIAQLSVAR---- 118

Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
                   H +     +     +I         E +    +  +  D +  + + E  + 
Sbjct: 119 --PVMVHEHEVIHPDGSIGWQRWINRLLLTTDSEPVEYQALGIDITDRKRAEIEREQLIA 176

Query: 453 QLCS 456
           +L +
Sbjct: 177 ELAA 180



 Score = 40.4 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/194 (9%), Positives = 47/194 (24%), Gaps = 4/194 (2%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTWYGKTTL 149
             G L  +++   +       ++IG    D+  +         I  L   +     +  +
Sbjct: 68  PDGTLTFVNQLYCEAFKRSRAELIGFNFYDLIPLSQRAAVAAGIAQLSVARPVMVHEHEV 127

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
              +G+  +       L             G  I    R + +   L   L  +   L +
Sbjct: 128 IHPDGSIGWQRWINRLLLTTDSEPVEYQALGIDITDRKRAEIEREQLIAELAARNETLEQ 187

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
                S   K                 ++  +   +        +      +    E  L
Sbjct: 188 FSYTVSHDLKSPLITIKG---FAGYIQQDLRAGKLDRIPDDLQRIIAAADRMHQLLEDLL 244

Query: 270 PEQEDFHTINLNQY 283
              +    ++  + 
Sbjct: 245 HLAQAGRQLSTPER 258


>gi|120601627|ref|YP_966027.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4]
 gi|120561856|gb|ABM27600.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4]
          Length = 1005

 Score =  291 bits (744), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 123/825 (14%), Positives = 246/825 (29%), Gaps = 123/825 (14%)

Query: 85  FTWNIDAH---GYLKEISEELPKTIG-------------NYAFKMIGMRLCDVSDILHID 128
           F W +        L +++      +                +  ++G  L  + +     
Sbjct: 56  FVWRVARDVGASRLIDMNPLAKAYLENVPRNGDDGSPDLPESPDLLGSLLPWLVESPF-- 113

Query: 129 PNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNR 188
               +  +     T           G   +       LP+              I     
Sbjct: 114 -GEALRRVHAEGGTLEIPALRHGAAGGGRFWRCIFCRLPLGDV---------IAISEDIT 163

Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS------- 241
              +  A     ++ +  L E           +  +              ++        
Sbjct: 164 AAQETGAALVTSERGYRTLVENIPDIVVRFDARGRLLFANPALRRFVRSKRLPSGHVTGQ 223

Query: 242 SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301
            L +  A   ++ +  +  + + E      +E           +         +  ++  
Sbjct: 224 PLGQQPAMLRELRERVQLAMSSGEVQRAELEERTRQGRRFFEWR--IVPEPAPDGGDATV 281

Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG------NLFYANPSFLLLTKYK 355
               R+  ++    ++   L    +    +   +               NP+F  +T   
Sbjct: 282 LCIGRDVSAMRRATEDYRALFNGMLSAFALHEIICDGAGVPVDYRFLAVNPAFERMTGLL 341

Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI-----QWNRENS 410
           + + +        +L   +         V L     T  A +  L            E  
Sbjct: 342 ASEMVGRT--ARDVLPGLESEWLQRYGQVALTGVPVTFEAFNRDLGKYFKVSAYRPAERQ 399

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI----LEATSDG-I 465
            A  F       +  E    N      +      ++ E  V +        L     G +
Sbjct: 400 FACMFHDVTDRVRGREERRSNARRMAALQRIFRMKEPEEVVARYALTQSMQLTGARVGRV 459

Query: 466 AIINREGI-ILSTNRAVSKLFGYPVED--------------------------------- 491
            + + E   I         LFG                                      
Sbjct: 460 VLHDPETRVIRHIVDHGDPLFGTEGWQWASVAHGGAGGDDTDGGATGGRGPDEPEGIAGP 519

Query: 492 --ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
             +  +P    + +   + ++  +T   +      L               L +   +L 
Sbjct: 520 RRVPPQPDAGHVAEPDRARLDDLMTRAAAG--MGPLASELTHGRHGPHARHLAV-PVRLD 576

Query: 550 FSSCYSLTMHD----------------------ISEWKQEKNKLSHAKKIAEKESSHKSD 587
                   + D                        E ++  ++LS AK+ AE  +  KS+
Sbjct: 577 GRLGAVAVLLDKPTPFTRADIKQLDLLMRGMLEHLERRRSLHRLSLAKEHAESANRAKSE 636

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           FLA +SHE+RTPL  ++G  ++++        +    E  +    SG  +L +++D+LD+
Sbjct: 637 FLANMSHELRTPLNGMLGMLQLLEAGDL----DRDQNELVHIALDSGRTLLRVLSDILDL 692

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707
           S+IE+G+M L  +  S +EAV +   +    A  + + +R         +  D   ++QI
Sbjct: 693 SRIEAGRMELRHDRFSPEEAVRQVYDMFAQDARIRGLRLRWRCDELPCEVWGDGTRLRQI 752

Query: 708 ALNILSNAIHFTPSGGQ-IIISTTHTSNEEVI--LRVRDTGVGMTNYELEKAMKPFGQIP 764
             N+L NA+ FT  G   + +     + E V     V DTG+G+ +  L    +PF Q+ 
Sbjct: 753 LFNLLGNAMKFTHEGTVGVEVCAVRRTEESVRLLFSVSDTGIGIPHDRLMSIFEPFTQLD 812

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            S   R  GTGLGL + + +V    G   + S   +GT + +  P
Sbjct: 813 GSTTRRYSGTGLGLGIVRRLVHLMGGGLNVESALGEGTAVHVCLP 857



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 36/303 (11%), Positives = 74/303 (24%), Gaps = 29/303 (9%)

Query: 287 QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS------HGN 340
                +Q  S           H S          L     ++ P+  FV+          
Sbjct: 9   HGARMVQAESTIRTLRRERVLHDSQVEQLRRTGALYRSVFERIPVMVFVWRVARDVGASR 68

Query: 341 LFYANPSFLLLT------KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394
           L   NP                  D+  +  L   L  P L ++   + +    ++   +
Sbjct: 69  LIDMNPLAKAYLENVPRNGDDGSPDLPESPDLLGSLL-PWLVESPFGEALRRVHAEGGTL 127

Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
              A L              F      +          I  +    +     +       
Sbjct: 128 EIPA-LRHGAAGGGRFWRCIFCRLPLGD-------VIAISEDITAAQETGAALVTSERGY 179

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLF---GYPVEDILRKPFTVFLEQNTPSVMNH 511
            +++E   D +   +  G +L  N A+ +       P   +  +P     +      +  
Sbjct: 180 RTLVENIPDIVVRFDARGRLLFANPALRRFVRSKRLPSGHVTGQPLGQ--QPAMLRELRE 237

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKN 569
            +   +S    Q  E          +    RI+ +  P            D+S  ++   
Sbjct: 238 RVQLAMSSGEVQRAELEERTRQG-RRFFEWRIVPEPAPDGGDATVLCIGRDVSAMRRATE 296

Query: 570 KLS 572
              
Sbjct: 297 DYR 299


>gi|222053125|ref|YP_002535487.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           FRC-32]
 gi|221562414|gb|ACM18386.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           FRC-32]
          Length = 751

 Score =  291 bits (744), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 82/374 (21%), Positives = 180/374 (48%), Gaps = 18/374 (4%)

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
           +   ++ +E+ +L +IL +  +G+ + + +  ++  N A   + G     ++ +      
Sbjct: 394 LRTAELSMEMGRLETILTSMVEGVLVTDSDSRVILFNPAAQAILGIVPYKVIGQSIEQLG 453

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDI 561
                S +   + EI          +  L    ++  ++L  + ++    +   +++ DI
Sbjct: 454 NSGEFSNLVRCIQEIKETWGPVASRQEDLTLKGKKLKINLAPMAREGNEFAGIVMSLRDI 513

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           +     + ++             K++F++ VSHE++TPLT++ G  +++ N+  G     
Sbjct: 514 T----AEEEI----------DRMKTEFISTVSHELKTPLTSMKGSLQLLLNR--GKWLTE 557

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
              +  +   R+   ++ +++++LDIS++ESG M+  F+P+S+ E V  AI  ++ +A+ 
Sbjct: 558 TERQLLSVCLRNTQRLIRMISEILDISRMESGGMDFTFKPLSMGELVVYAIEEIKTFAHN 617

Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
           + I I  S  +++P +  D   + Q+  N+LSNA+ F+P G  +++         +++ V
Sbjct: 618 RSISIVNSLGDHLPLVYGDHDRLIQVLTNLLSNAVKFSPEGKIVMV-LAEREGNYLVVSV 676

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            D    +   + EK  K F Q+  S Q    GTGLGL + K +++ + GK Y  +    G
Sbjct: 677 TDRARAIQWSDREKLFKKFQQLE-SDQPMQGGTGLGLAICKEIIEKHHGKIYYNAGKEGG 735

Query: 802 TLIEIIFPLYDTSH 815
            +     P+Y+ +H
Sbjct: 736 NVFSFTVPIYEENH 749


>gi|254513976|ref|ZP_05126037.1| sensor protein GacS [gamma proteobacterium NOR5-3]
 gi|219676219|gb|EED32584.1| sensor protein GacS [gamma proteobacterium NOR5-3]
          Length = 508

 Score =  291 bits (744), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 101/454 (22%), Positives = 184/454 (40%), Gaps = 35/454 (7%)

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
           D      + A     +          +A    +  +    L  ++  F       E    
Sbjct: 81  DQRSALSSIAATQSTVEALGGMGSDVTAAQFNLLRDSSARLLGSWRAFYDNYNDGEWQSD 140

Query: 431 NGIEPEDVDTRINKRKMEIEVM----QLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
                  ++     +++E        Q  ++++ T   IA+ +    I         + G
Sbjct: 141 VDDPIPYLEASQRLKELEQRQAFIAVQRANVIDRT---IALTD---RIT--------VLG 186

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
           +     L      FL + T   +         L   + L+        + +L  L     
Sbjct: 187 FIASIFLTATLGFFLVRYTNDNLKRLKRGTQKLGAGE-LDYRIEDIDDDGELGDLASAFN 245

Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
            +              + ++  ++   AK  A++ ++ KS FLA VSHE+RTPL AIIG+
Sbjct: 246 SMSD------------KLRRAIDEEKDAKLSADEANAAKSRFLANVSHELRTPLNAIIGY 293

Query: 607 SEVIKNQRFG--PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           SE++ ++     P+   +Y    + I  SG  +L +++D+LD+SKIE+GKM L  E    
Sbjct: 294 SEMLHDELDDETPIDRKQYQNDLDKIVLSGRQLLALIDDILDLSKIETGKMTLVKEQFHP 353

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724
            EA++ A+  +         +++    + +P I  D    +QI +N+LSNA  FT  G  
Sbjct: 354 GEALTMAVDALAPLLRRNGNVLQCDDFSTLPMINNDAVKFRQIIVNLLSNAAKFTAEG-M 412

Query: 725 IIISTTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
           I +S + T   + + + V DTG+GMT  +     + F Q  ++      GTGLGL + + 
Sbjct: 413 IRVSASFTQATQHLEITVSDTGIGMTPEQQALVFEAFVQADDATSNTYGGTGLGLAICRD 472

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
             +   G+  + S P +G+   +  P+     P 
Sbjct: 473 FCELMGGQISVASEPGEGSTFTVSLPVDPELTPE 506


>gi|85857964|ref|YP_460166.1| signal transduction histidine kinase [Syntrophus aciditrophicus SB]
 gi|85721055|gb|ABC75998.1| signal transduction histidine kinase [Syntrophus aciditrophicus SB]
          Length = 593

 Score =  291 bits (744), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 84/366 (22%), Positives = 169/366 (46%), Gaps = 28/366 (7%)

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           S+++    G+  ++ E  I++ N     +F     D+L +  +  L       +      
Sbjct: 245 SLVDHMPIGLVAMDLEEKIMAFNETAEVIFRLSGGDVLGREASGILPDE----LLEMPDT 300

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKL 571
           + +      LEK       + + + L +I  +L         Y++   D++E ++ K+++
Sbjct: 301 LDAAGP--ILEKEMECQLGDGRTVPLEVIATRLQDDEGTLFGYAILFRDLTEVQRLKSEV 358

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
             ++++A           A V+HEIR PL++I GF+ V++ +      NP     A+ + 
Sbjct: 359 ERSRRLA-----AIGSLAAGVAHEIRNPLSSIKGFATVLRERHR---ENPEDQRIADIMI 410

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
                +  ++  LL+ S+     + ++ +  +++  +   + +++  A +K I IRT F 
Sbjct: 411 SEVERLNRVIGQLLEFSRP----LTMNRKDSAIEPILQHTVKMIEEQARKKGIDIRTEFP 466

Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751
             +P +L D   + Q+ LN+  NA++   +GG + +  +      + + V DTG G+   
Sbjct: 467 EGVPDLLIDPDKMTQVFLNLSLNAVNAMDTGGTLSLKISRPEARTIRVDVADTGTGIRPD 526

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
           EL +   P+     S      GTGLGLP+A+ +V+A+ GK  + S   KGT+  +  P  
Sbjct: 527 ELGRIFDPYFTTRPS------GTGLGLPIAQRIVEAHGGKIAVASQQGKGTVFSVFLPCR 580

Query: 812 DTSHPH 817
           +TS  H
Sbjct: 581 ETSAGH 586


>gi|87121408|ref|ZP_01077297.1| Serine/Threonine protein kinase and Signal Transduction Histidine
            Kinase (STHK) with GAF sensor [Marinomonas sp. MED121]
 gi|86163251|gb|EAQ64527.1| Serine/Threonine protein kinase and Signal Transduction Histidine
            Kinase (STHK) with GAF sensor [Marinomonas sp. MED121]
          Length = 2241

 Score =  291 bits (744), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 83/256 (32%), Positives = 133/256 (51%), Gaps = 16/256 (6%)

Query: 561  ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
            I+E  +   +L+ A+  A K +  KS+FLA +SHEIRTP+  +IG S+++         +
Sbjct: 1474 ITERTR---ELNQARLTAIKANQSKSNFLANMSHEIRTPMNGVIGLSQLLLKTNL----D 1526

Query: 621  PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
             +   YA     S N +L I+ND+LD SKIE GKM L   P +L++ V    ++ +L A+
Sbjct: 1527 NKQKNYAKKTLESANSLLTIINDILDFSKIEVGKMTLEEAPFNLEQLVKRVTTICELRAH 1586

Query: 681  EKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-----TSN 734
             K + +    + NIP  ++ D   ++QI LN+ SNA+ FT SG  +II           +
Sbjct: 1587 TKDLELIVDISPNIPFNLIGDALRLEQILLNLTSNAVKFTKSG-HVIIRVQSLNEVEIDD 1645

Query: 735  EEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
              V   + V DTG+G++  +     + F Q  +S      GTGLGL + K +V+   G+ 
Sbjct: 1646 MHVQLNIEVEDTGIGISEQQCALLFESFTQANDSITREFGGTGLGLAICKQLVELMQGQI 1705

Query: 793  YIFSTPAKGTLIEIIF 808
             + S P  G+   +  
Sbjct: 1706 QVRSQPNIGSTFSLKI 1721


>gi|283853532|ref|ZP_06370772.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfovibrio sp. FW1012B]
 gi|283571071|gb|EFC19091.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfovibrio sp. FW1012B]
          Length = 590

 Score =  291 bits (744), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 81/374 (21%), Positives = 156/374 (41%), Gaps = 28/374 (7%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           R ++R+++        I+     G+   + +G +   N A  ++ G    DI+ K     
Sbjct: 233 RFSRRQLQDTRAFASEIINNLPVGLITTDSDGKLAVVNSAAERISGLKAADIMGK----- 287

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SL 556
           + +         L +++       +E  T  S   EK L L +   K+            
Sbjct: 288 IPEEVLPGAWCSLRDVVDKGEP-VMEHETECSFDGEKNLPLSLSASKILNEEGTHLGNLF 346

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
              D+ E ++ + ++   +K+A           A V+HEIR PL++I GF++  + Q   
Sbjct: 347 IFRDLGEVRRLQEEVRRKEKLA-----ALGSLAAGVAHEIRNPLSSIKGFAKYFEGQC-- 399

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
                +  E A  + +  + +  ++ +LLD ++      +L      +   +  ++ LV+
Sbjct: 400 -AEGSQGRELAAVMAQEVDRLNRVITELLDFARPS----DLKTRSTDVGSLIEHSLRLVR 454

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
             A  K+I +       +P I  D   + Q  LN+  NAI    +GG + +         
Sbjct: 455 QDAEGKKITVTFDRNAGLPVIAIDPDRLTQALLNLYLNAIQAMENGGTLAVRAAADGRGG 514

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           V + V D+G G+    L     P+    +S      GTGLGL + + +++A+ G+  + S
Sbjct: 515 VRIEVEDSGKGIAPESLSSIFNPYFTTKSS------GTGLGLAIVQKIIEAHRGEVKVKS 568

Query: 797 TPAKGTLIEIIFPL 810
           TP +GT   I+ P+
Sbjct: 569 TPDRGTTFNILLPV 582



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 32/260 (12%), Positives = 74/260 (28%), Gaps = 15/260 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            D+ G L  ++    +  G  A  ++G    +V           + D++ +        T
Sbjct: 260 TDSDGKLAVVNSAAERISGLKAADIMGKIPEEVLPGAWC----SLRDVVDKGEPVMEHET 315

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSG----FRGFGIVHVNRVDNDPRALGKRLDKKF 204
               +G    +P+ L+A  I +      G    FR  G V   + +   +     L    
Sbjct: 316 ECSFDGEK-NLPLSLSASKILNEEGTHLGNLFIFRDLGEVRRLQEEVRRKEKLAALGSLA 374

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
           + +    +   S  K     F  Q          +++++      + + + TE       
Sbjct: 375 AGVAHEIRNPLSSIKGFAKYFEGQCAEG--SQGRELAAVMAQEVDRLNRVITELLDFARP 432

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFG----TLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
            +      +    I  +    +Q       T+  +       ++        A  +   N
Sbjct: 433 SDLKTRSTDVGSLIEHSLRLVRQDAEGKKITVTFDRNAGLPVIAIDPDRLTQALLNLYLN 492

Query: 321 LTPETVDKCPIPFFVYSHGN 340
                 +   +     + G 
Sbjct: 493 AIQAMENGGTLAVRAAADGR 512


>gi|159897332|ref|YP_001543579.1| PAS/PAC sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159890371|gb|ABX03451.1| PAS/PAC sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 399

 Score =  290 bits (743), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 80/376 (21%), Positives = 153/376 (40%), Gaps = 42/376 (11%)

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
               ++  A   G+ ++N    I   N   +KLFG     ++       +       M  
Sbjct: 49  QLFRTLSAALDAGVIVVNDGRTIRYCNDVAAKLFGVSANAVVNHSVITLVRDYQADTMIE 108

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571
               I   D +Q   +  L      + + +          S   +   D+++    +   
Sbjct: 109 --QSIRRRDPQQVTLQPVL----SNRTIRIWCEPLP---ESGALILARDLTQLSLLE--- 156

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
                        + D +A VSHE+RTPL +I    E +  Q                +D
Sbjct: 157 -----------RARRDLVANVSHELRTPLASIKLLVETLATQP----PPELAQRMLGQVD 201

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
              + V+ +V++L ++S+IESG+  L  +P  +++ V  A   +Q  A  K + +  + A
Sbjct: 202 TELDAVMQLVDELHELSQIESGRTALQLQPTPVEDIVERANDRIQPQAKRKDLRVAVTIA 261

Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS---------------NEE 736
            ++P +  D   + Q+ LN+L NA+ +T +GG I I     S               N  
Sbjct: 262 PDLPEVYVDRDRISQVLLNLLHNAVKWTDAGGTITIEAGLRSRSELGHHLSRMLEPSNRW 321

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           VI+ + DTG G+    + +  + F ++  ++     GTGLGL + K +V+ + G  ++ S
Sbjct: 322 VIMAIHDTGAGIPAEAIPRIFERFYKVDRARTRGVGGTGLGLAIVKHLVEGHGGVVWVAS 381

Query: 797 TPAKGTLIEIIFPLYD 812
           +  +G+   +  P+ +
Sbjct: 382 SEGRGSTFTVALPVVE 397


>gi|300867581|ref|ZP_07112231.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
 gi|300334469|emb|CBN57401.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
          Length = 532

 Score =  290 bits (743), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 87/513 (16%), Positives = 190/513 (37%), Gaps = 21/513 (4%)

Query: 318 GENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
           G                  S G   +A+  + L              G+  +L +  L  
Sbjct: 10  GPRQMEYLAINQQFTILEKSFGVERFADRPWELKIGADVRLAFPEVIGVEDVLISVLLGQ 69

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
               +   + R           ++  +   E       +     +   + + +  +    
Sbjct: 70  KINFELKGIARFVDNSQPLYFDIYAFENR-EEDHIENRLIILFEDVTEKMVAKQVLIQRA 128

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
            +  +    +      +  I+++  D + +    G I + N++   LFGY   +++ +  
Sbjct: 129 NEANLLLSALAASKDYIDKIIKSMGDALLVTTTAGTIKTVNQSAQFLFGYSEGELIGESI 188

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SC 553
           +  +      +       IL        +   L   K ++ + +      +         
Sbjct: 189 S-LITDEDKLLSQARHRYILCQGELSNFDIKLLCRKKTKQEIWVEFSCSAIQTEIQGLHD 247

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
           +     DI+E  +E+ ++  A    ++    KS F + ++HE   PL  ++  +E++K  
Sbjct: 248 FVYIGRDITERNREEIEIRTALAKEKELREIKSRFFSMIAHEFANPLNTVLMSTEILKEH 307

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
           +       +  +Y  +I  +   +++++ND+  IS  E GK+  +  P+ L +  S+ + 
Sbjct: 308 QLETTEAEKI-QYLTHIKTASKHMIELLNDVRFISSAELGKIEFNPVPIDLTKFCSDLVE 366

Query: 674 LVQLYANEKRIL--IRTSFANNIP-------RIL--ADLRSVKQIALNILSNAIHFTPSG 722
            +++ A    I+  + T  +   P        IL   D + ++QI  N+L NAI ++P G
Sbjct: 367 EIKIAAGRNHIIQFVPTQKSAQNPGEDGQQAEILPLLDAKMMRQILSNLLLNAIKYSPQG 426

Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
             +      +   E +  ++D G+G+   + E+  + F +  N    +  GTGLGL + K
Sbjct: 427 STVYFEFEQS-FLEAVFTIKDEGIGIPIADQEQLFESFYRAHN--VGKISGTGLGLAIVK 483

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
             V+ + G     S    GT   +  PL   S 
Sbjct: 484 ECVNLHGGSIIFSSEVGAGTTFRVAIPLKGNSQ 516



 Score = 51.2 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/132 (15%), Positives = 43/132 (32%), Gaps = 4/132 (3%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151
            G +K +++      G    ++IG  +  ++D   +        +L +         L  
Sbjct: 162 AGTIKTVNQSAQFLFGYSEGELIGESISLITDEDKLLSQARHRYILCQGELSNFDIKLLC 221

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIV-HVNRVDNDPRALGKRLDKKFSHLHEI 210
            + T   + ++ +   I +   E  G   F  +       N      +    K   L EI
Sbjct: 222 RKKTKQEIWVEFSCSAIQT---EIQGLHDFVYIGRDITERNREEIEIRTALAKEKELREI 278

Query: 211 KKGHSSVEKEKY 222
           K    S+   ++
Sbjct: 279 KSRFFSMIAHEF 290


>gi|190890327|ref|YP_001976869.1| two-component sensor histidine kinase [Rhizobium etli CIAT 652]
 gi|190695606|gb|ACE89691.1| probable two-component sensor histidine kinase protein [Rhizobium
           etli CIAT 652]
          Length = 732

 Score =  290 bits (743), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 72/382 (18%), Positives = 156/382 (40%), Gaps = 26/382 (6%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            +E E ++  +++ +T D + +I+  G I S N A   +FGY  ++ + +   + + +  
Sbjct: 347 NLEAERIRFGALVRSTPDAVIVIDGRGTIKSFNPAAESMFGYAPQETIGRNIKMLMPEPY 406

Query: 506 PSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKL--PFSSCYSLTMHDI 561
            S  + YLT        + +   ++  G  K   +  + + I  +    +  +   + DI
Sbjct: 407 HSEHDGYLTHYRQTGEERIIGTTRMVSGRRKNGIVFPIEVSISVVFSGETKTFVGIVRDI 466

Query: 562 SEWKQEKN-------KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
           SE  +++        +L       E+ +    +F    SH+++ PL  +   S  +    
Sbjct: 467 SERARQEERMKTTLAQLEAYTAELERSNHDLDEFAYIASHDLKEPLRGLHNHSRFLLEDY 526

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
              L +       N + R    +  +VNDLL  S++  G+  L  +   +   V + ++ 
Sbjct: 527 EDKLDDDGVRR-LNRLVRLSQRMEKLVNDLLYFSRL--GRQQLAVKRTDIGLIVKDVVAT 583

Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS- 733
           ++L   E+    R      +P ++ D   + ++  N+++NAI +      + +S  +   
Sbjct: 584 MELLLEERHA--RVVIDGRLPEVVCDAPRLTEVFRNLITNAIKYNDKPAPL-VSIGYLER 640

Query: 734 ----NEEV---ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
               +  +   +  VRD G G+     E   + F ++  SQ    +GTG GL   + ++ 
Sbjct: 641 YVGGDGTIARNVFFVRDNGKGIPREFHEDIFRIFKRLEKSQDSD-DGTGAGLTFVRKIIA 699

Query: 787 ANMGKFYIFSTPAKGTLIEIIF 808
            + G  ++ S    GT      
Sbjct: 700 RHNGDIWLESEVGAGTTFYFTL 721



 Score = 54.6 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 44/367 (11%), Positives = 97/367 (26%), Gaps = 36/367 (9%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD-ILHIDPNNHIGDLLKRQNTWYGKT 147
           ID  G +K  +       G    + IG  +  +     H + + ++    +        T
Sbjct: 369 IDGRGTIKSFNPAAESMFGYAPQETIGRNIKMLMPEPYHSEHDGYLTHYRQTGEERIIGT 428

Query: 148 TLWPIEGT---NLYVPIDLAALPIY-SRNREFSGFRGFGIVHVNRVDNDPRALGK-RLDK 202
           T   + G     +  PI+++   ++    + F G     IV             K  L +
Sbjct: 429 TRM-VSGRRKNGIVFPIEVSISVVFSGETKTFVG-----IVRDISERARQEERMKTTLAQ 482

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
             ++  E+++ +  +++  Y        P      +    L +Y    DD        L+
Sbjct: 483 LEAYTAELERSNHDLDEFAYIASHDLKEPLRGLHNHSRFLLEDYEDKLDDDGVRRLNRLV 542

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
              +       D    +             Q  + +  +          +      E   
Sbjct: 543 RLSQRMEKLVNDLLYFSRLGR---------QQLAVKRTDIGLIVKDVVATMELLLEERHA 593

Query: 323 PETVD-KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
              +D + P            + N    L+T     +D          L+     D    
Sbjct: 594 RVVIDGRLPEVVCDAPRLTEVFRN----LITNAIKYNDKPAPLVSIGYLERYVGGDGTIA 649

Query: 382 KPVMLYRSDRTCIAASARLHTIQW----------NRENSLAMTFIPFEKANQFPENMPQN 431
           + V   R +   I         +           +      +TF+    A    +   ++
Sbjct: 650 RNVFFVRDNGKGIPREFHEDIFRIFKRLEKSQDSDDGTGAGLTFVRKIIARHNGDIWLES 709

Query: 432 GIEPEDV 438
            +     
Sbjct: 710 EVGAGTT 716


>gi|187778664|ref|ZP_02995137.1| hypothetical protein CLOSPO_02259 [Clostridium sporogenes ATCC
           15579]
 gi|187772289|gb|EDU36091.1| hypothetical protein CLOSPO_02259 [Clostridium sporogenes ATCC
           15579]
          Length = 702

 Score =  290 bits (743), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 90/496 (18%), Positives = 182/496 (36%), Gaps = 18/496 (3%)

Query: 322 TPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
               ++       V+     L   N +   +   K    + I   ++        +  N 
Sbjct: 184 LNNVINNVSEGILVFDKHSKLILWNKAIEQIGGMKIKKILGIKEIINEYDIYILDNHKNM 243

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
              +     D         L  ++ +      + +      ++  E +          D 
Sbjct: 244 KYKIKKVNPDYNSSVKDLLLKLVKKDSNEIKYIEYNSNPIIDENNEILYTISSIKNVTDL 303

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGY-----PVEDILR 494
             ++   E     +  +++     +A+++  +      N    +L           ++L 
Sbjct: 304 IESQIISEERAEFIKYVVDCIELPLAVLDYPDLTYKLVNERYEELVERLYTKKIKGNLLG 363

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQ--TLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
                   +         L ++    +++     +  +  + EE+   ++ I  +     
Sbjct: 364 NTVEDVFRKEEFKEQLEVLQKMKEGTIKEYTFSPEKFVLQSGEERFFKVKYIYHETKNKK 423

Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
              +   D++E               EK +  K +F   +SHE+RTPLT I    + +  
Sbjct: 424 RVHIHGSDVTEE-------FKNNLELEKVNKLKDEFFTIISHELRTPLTIIYSSLQ-LAY 475

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
             +    NP   +    I+++   +L ++N++LDISK E+G + L+ E   +       +
Sbjct: 476 DIYSKDINPSIDKILKRINQNTARLLKLINNILDISKAEAGFLALNNEYFDVVWETENIV 535

Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
           + +  YAN K I +         ++  D    ++I LN+LSNA+ FTP    I ++    
Sbjct: 536 NSITNYANSKNINLIFDTTKEEEKVWIDKDKYERILLNLLSNAVKFTPENKSIYVTLKIY 595

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
            N    L V+D G G+   +++     F Q+ +S     EGTG+GL L K +VD   G+ 
Sbjct: 596 KNNF-KLIVKDEGAGIPKEKIDCIFNRFAQVNSSLSRNAEGTGIGLSLVKKIVDLMGGEI 654

Query: 793 YIFSTPAKGTLIEIIF 808
            + ST  KGT   +  
Sbjct: 655 KVNSTLGKGTTFTVKI 670


>gi|291570453|dbj|BAI92725.1| two-component sensor histidine kinase [Arthrospira platensis
           NIES-39]
          Length = 497

 Score =  290 bits (743), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 78/265 (29%), Positives = 144/265 (54%), Gaps = 21/265 (7%)

Query: 561 ISEWKQEKNKLSH-------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
           +S+ K+++ +L++         + A+  +  KS+FLA +SHEIRTP+ A++GF++++++ 
Sbjct: 152 LSQEKEQRQELTYKNIRLKKMTEEAKAANRAKSEFLANMSHEIRTPMNAVLGFADLLQST 211

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
               + +P+   Y   I  SG  +L ++ND+LD+SKIE+GK+ LH+EPV++   ++E   
Sbjct: 212 ----ITDPQASSYIKAIASSGRTLLALINDILDLSKIEAGKLQLHYEPVNIRTIINEIEH 267

Query: 674 LVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
           + +    EK I ++   A  IP  I+ D   ++QI  NI+ N+I FT  G  + I  + +
Sbjct: 268 IFEQKTKEKNIKLQVYIAPEIPYSIIMDEVRLRQILFNIVGNSIKFTEFGS-VKIMASCS 326

Query: 733 S--------NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
                    +  + + + DTG+G++  + +K    F Q       +  GTGLGL + + +
Sbjct: 327 QLKPNHPYNSINLKIAITDTGIGISPEDQQKIFDSFTQSEGQSNRKYGGTGLGLTITERL 386

Query: 785 VDANMGKFYIFSTPAKGTLIEIIFP 809
           V    G  ++ S   +G+     FP
Sbjct: 387 VHLLGGSIHLESQINQGSTFTFDFP 411


>gi|153803093|ref|ZP_01957679.1| sensor histidine kinase/response regulator [Vibrio cholerae MZO-3]
 gi|229521281|ref|ZP_04410701.1| BarA sensory histidine kinase [Vibrio cholerae TM 11079-80]
 gi|124121375|gb|EAY40118.1| sensor histidine kinase/response regulator [Vibrio cholerae MZO-3]
 gi|229341813|gb|EEO06815.1| BarA sensory histidine kinase [Vibrio cholerae TM 11079-80]
          Length = 927

 Score =  290 bits (743), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 84/317 (26%), Positives = 147/317 (46%), Gaps = 14/317 (4%)

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568
           ++      L + +   +        K    +++ +    +           D+ E  ++ 
Sbjct: 211 VDRIRRGHLDVRIEGKMHGELDTLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQL 270

Query: 569 N----KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
                +L  AKK A++ +  KS+FLA +SHE+RTPL  +IGF+  +   +          
Sbjct: 271 EIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTN----SQA 326

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           +Y   I++S N +L I+ND+LD SK+E+GK+ L   P    E + E ++L    A+EK +
Sbjct: 327 DYLQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGL 386

Query: 685 LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT----SNEEVIL 739
            I       IPR ++ D   ++Q+  N++ N+I FT  G  I +S           ++  
Sbjct: 387 EITLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERG-NIDVSVEMRALRDDVIDLQF 445

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            VRDTG+G++  +  +  + F Q   S   R  GTGLGL + + +V    G+  + S   
Sbjct: 446 MVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLH 505

Query: 800 KGTLIEIIFPLYDTSHP 816
           +G+       L+ T  P
Sbjct: 506 QGSTFWFTLRLHTTELP 522


>gi|86145559|ref|ZP_01063889.1| histidine protein kinase PhoR [Vibrio sp. MED222]
 gi|218708603|ref|YP_002416224.1| phosphate regulon sensor protein [Vibrio splendidus LGP32]
 gi|85836530|gb|EAQ54656.1| histidine protein kinase PhoR [Vibrio sp. MED222]
 gi|218321622|emb|CAV17574.1| Histidine protein kinase PhoR [Vibrio splendidus LGP32]
          Length = 432

 Score =  290 bits (743), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 80/417 (19%), Positives = 159/417 (38%), Gaps = 36/417 (8%)

Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
            +    RL    W+ +            +         NGI       R  ++++   + 
Sbjct: 46  HLHYQMRLSAWLWDEKR-------LTPPSGSGNWESLFNGIYRMQQRQRRKRKELTNLIR 98

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
           +  +  E+  D + +   EG I+  N+    L G+   D   +P +  +         + 
Sbjct: 99  RFRNGAESLPDAVVVFRGEGNIVWCNKLAQYLLGFRWPDDSGQPISNLIRTPDFIKYLNK 158

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572
                 L++   L    +          L + I        + + + D+++ KQ +    
Sbjct: 159 QDFSEPLEMPSPLNVERM----------LELRIVPYTEGE-HLMVVRDVTQLKQLEG--- 204

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
                       + +F A VSHE+RTP+T + G+ E+   +    +  P + +    +  
Sbjct: 205 -----------MRRNFFANVSHELRTPMTVLQGYLEM--TEDPDMVVGPMWPKAHGVMTE 251

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
             N +  +VN LL +SKIE+  M+   E V++   +          + E+   ++     
Sbjct: 252 QLNRMNSLVNQLLTLSKIEAAPMHELDEVVNVPAMLEVLEKEAASLSGEREHKLKFDIDK 311

Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752
           ++ R+LAD   ++    N++ NA+ +TP G  + +    TS     L V DTG G+    
Sbjct: 312 SL-RVLADEDQLRSAISNLVYNAVKYTPPGATVKVRWYQTSQG-ACLDVSDTGDGIEPQH 369

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           L +  + F ++  ++     G+GLGL + K  +  +     I S    G+      P
Sbjct: 370 LHRLTERFYRVDKARSRDTGGSGLGLAIVKHALSHHDSHLEIQSEVGVGSRFHFTLP 426


>gi|13470935|ref|NP_102504.1| sensor kinase [Mesorhizobium loti MAFF303099]
 gi|14021678|dbj|BAB48290.1| sensor kinase [Mesorhizobium loti MAFF303099]
          Length = 898

 Score =  290 bits (743), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 99/664 (14%), Positives = 209/664 (31%), Gaps = 52/664 (7%)

Query: 175 FSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL 234
           F+   GF  V      ++          +   + + K       +   D+    S    L
Sbjct: 109 FATAIGFVQVTPRSTGDELSKAFVDSMAQGLLVTDTKGRVVYANRAYADMTGASSAA-DL 167

Query: 235 RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294
           +    + S     +     L +        +      Q             +    T   
Sbjct: 168 KTVEGLLSDVPEASVTIYRLASGLRDGQPGDGEFRLAQSIRPGAEPGARWYRARARTFNV 227

Query: 295 NSKE----SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFL 349
             +     +++        +    F        + +D  P  FF     G + Y N +  
Sbjct: 228 PGQRLPMLAWQLADISQERAEQERFFLDLQKAIDHLDHAPAGFFSADQDGRVTYINATLA 287

Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
                        A  L      P +   + +  V   ++D      +     +      
Sbjct: 288 EWLGIDLASFTPGAVTL------PDIVAGDGMALVRSVKADPGTTRNAVIDLDLTTMTGE 341

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469
           +L + F+    A++     P   I             +    ++      +T   IA ++
Sbjct: 342 ALPVRFMHRVSASREGIGGPTRTIVLNRTQGEDASADLRASEVRFTRFFNSTPMAIAGVD 401

Query: 470 REGIILSTNRAVSKLFG--YPVEDILRK-PFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
             G IL TN     LF      + + R+      + +           +           
Sbjct: 402 ASGRILRTNAPFLSLFSSVVDRDAVDRRVRLDTVIHERERPAFAAAFEKAR-QRQADIEP 460

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSC-----YSLTMHDISEWKQEKNKLSHAKKIAEKE 581
             T+    EE+ +   +                 +   + +E K  + +++ ++K+    
Sbjct: 461 IDTVLPGNEERHIRFYVNAVADGTGGEGAEESAIVYAVETTEQKALEGQMAQSQKM---- 516

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
                     ++H+    LTAII  S+++         +P + +  N I ++ N    +V
Sbjct: 517 -QAVGQLAGGIAHDFNNVLTAIIMASDLLLTNHRP--SDPSFPDIMN-IKQNANRAASLV 572

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701
             LL  S+    K  L  E ++L + +++ + ++        I ++     ++  +  D+
Sbjct: 573 RQLLAFSR----KQTLRPEVLNLTDVLAD-LRMLLARLVGNDIKLKIDHGRDLWPVKVDI 627

Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTT--------------HTSNEEVILRVRDTGVG 747
              +Q+ +N+  NA    P+GG + + T                 + + V++ V DTG G
Sbjct: 628 GQFEQVVVNLAVNARDAMPAGGDLTVRTRNVTAEECKTFSYRELAAADYVVVEVEDTGSG 687

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           +    L+K  +PF          G+GTGLGL +   ++    G  +  S   KG+   I 
Sbjct: 688 IAPDVLKKIFEPFFTTK----EVGKGTGLGLSMVYGIIKQTGGFIFCDSEVGKGSTFRIF 743

Query: 808 FPLY 811
            P +
Sbjct: 744 LPRH 747



 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 45/388 (11%), Positives = 100/388 (25%), Gaps = 29/388 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMI---GMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            D  G +   +       G  +   +      L DV           +   L+      G
Sbjct: 142 TDTKGRVVYANRAYADMTGASSAADLKTVEGLLSDV--PEASVTIYRLASGLRDGQPGDG 199

Query: 146 KTTL---WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
           +  L                  A   ++   +      + +  +++   +       L K
Sbjct: 200 EFRLAQSIRPGAEPGARWYRARAR-TFNVPGQRLPMLAWQLADISQERAEQERFFLDLQK 258

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
              HL     G  S +++    +   +    L +   ++S T       D++  +   L+
Sbjct: 259 AIDHLDHAPAGFFSADQDGRVTYINATLAEWLGID--LASFTPGAVTLPDIVAGDGMALV 316

Query: 263 TS-EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH---------PSLS 312
            S +      +     ++L   T +       +    S E +                 S
Sbjct: 317 RSVKADPGTTRNAVIDLDLTTMTGEALPVRFMHRVSASREGIGGPTRTIVLNRTQGEDAS 376

Query: 313 AYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLT-KYKSVDDIEIAGGLSTLL 370
           A     E       +  P+    V + G +   N  FL L       D ++    L T++
Sbjct: 377 ADLRASEVRFTRFFNSTPMAIAGVDASGRILRTNAPFLSLFSSVVDRDAVDRRVRLDTVI 436

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA-NQFPENMP 429
              +     A       R              +  N E  +                   
Sbjct: 437 HERERPAFAAAFEKARQRQ----ADIEPIDTVLPGNEERHIRFYVNAVADGTGGEGAEES 492

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSI 457
                 E  + +  + +M  +  ++ ++
Sbjct: 493 AIVYAVETTEQKALEGQM-AQSQKMQAV 519



 Score = 44.6 bits (104), Expect = 0.069,   Method: Composition-based stats.
 Identities = 35/323 (10%), Positives = 77/323 (23%), Gaps = 24/323 (7%)

Query: 79  IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK 138
                 F ++ D  G +  I+  L + +G             V+    +  +     L++
Sbjct: 264 DHAPAGF-FSADQDGRVTYINATLAEWLGIDLASF---TPGAVTLPDIVAGDG--MALVR 317

Query: 139 RQNTWYGKTTLWPIEGTNLYVPIDLAALPIY-----SRNREFSGFRGFGIVHVNRVDNDP 193
                 G T    I+       +   ALP+      S +RE  G     IV       D 
Sbjct: 318 SVKADPGTTRNAVIDLDL--TTMTGEALPVRFMHRVSASREGIGGPTRTIVLNRTQGEDA 375

Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP-------PHLRMKNKVSSLTEY 246
            A  +  + +F+          +       I    +P              ++   L   
Sbjct: 376 SADLRASEVRFTRFFNSTPMAIAGVDASGRILRTNAPFLSLFSSVVDRDAVDRRVRLDTV 435

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
              ++       +      ++ +   +     N  ++ +            E  E  +  
Sbjct: 436 IHERERPAFAAAFEKARQRQADIEPIDTVLPGNEERHIRFYVNAVADGTGGEGAEESAIV 495

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
                +        +      +        + G     N     +     +  +      
Sbjct: 496 YAVETTEQKALEGQMAQS---QKMQAVGQLAGGIAHDFNNVLTAIIMASDL-LLTNHRPS 551

Query: 367 STLLDAPKLSDNNAIKPVMLYRS 389
                       NA +   L R 
Sbjct: 552 DPSFPDIMNIKQNANRAASLVRQ 574


>gi|258507900|ref|YP_003170651.1| two component sensor transduction histidine kinase [Lactobacillus
           rhamnosus GG]
 gi|257147827|emb|CAR86800.1| Two component sensor transduction histidine kinase [Lactobacillus
           rhamnosus GG]
 gi|259649227|dbj|BAI41389.1| two-component sensor kinase [Lactobacillus rhamnosus GG]
          Length = 555

 Score =  290 bits (743), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 82/431 (19%), Positives = 174/431 (40%), Gaps = 33/431 (7%)

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             +     +   A     H +   R+       I   ++   P     N +  E    R 
Sbjct: 150 AWLFRSEHQYQEAIRVMSHNLDRIRQKKEPEPVILPPQSPFTPVARRINALAAEQTHLRE 209

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
                +    +L   ++    G+ +I+    ++  N A+S+L G+     + +P   +L+
Sbjct: 210 KVAVRQSSFDRL---IDNLPLGVMLIDTNKDVILHNHAMSQLLGHQ----IPQPRHNYLD 262

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTK--EEKLLSLRIIIKKLPFSSCYSLTMHD 560
                 +   +      +     E   L + K  +  ++ L     +L       + ++D
Sbjct: 263 DVKTYALARMIEHTFRHEKTHHQELTVLATQKSVDASVIPLNQGTSRLQ----VLVILYD 318

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           ++  +Q +                + DF+  VSHE++TP+TAI GF+E + +        
Sbjct: 319 VTYLRQVE--------------KMQLDFVGNVSHELKTPVTAISGFAETLLSG--AKNDP 362

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
               ++   I      +  ++ND+L +S+ ES +       V L + V +A+  +     
Sbjct: 363 ATLDKFLKIIFDESKRLTQLINDILTLSRPESNQTV--QAQVPLKKLVDDALRNLAKVIK 420

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
           +K+I +  + A ++ +++ D R + QI  N+L+NA+ +    G + I+        + L 
Sbjct: 421 DKQIRVEVAIAPDL-QVVTDERKLTQIVRNLLNNAVFYNRLAGHVTITAQVVE-GHLSLA 478

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V DTG+G+   E  +  + F ++  ++     GTGLGL +   +V +  G+  + S    
Sbjct: 479 VADTGIGIPETEQARIFERFYRVDKARSRHNGGTGLGLAIVSELVKSMDGQVAVSSQVGV 538

Query: 801 GTLIEIIFPLY 811
           G+   +  P+ 
Sbjct: 539 GSTFTVTLPVS 549


>gi|228992330|ref|ZP_04152261.1| hypothetical protein bpmyx0001_30720 [Bacillus pseudomycoides DSM
           12442]
 gi|228767355|gb|EEM15987.1| hypothetical protein bpmyx0001_30720 [Bacillus pseudomycoides DSM
           12442]
          Length = 519

 Score =  290 bits (743), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 90/529 (17%), Positives = 191/529 (36%), Gaps = 43/529 (8%)

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTK 353
           +S +   + +                +     +  P     +   G + + NPS   +  
Sbjct: 13  SSIQKNRHSAIPRRLRNHIQNCTLTEMYASLFEHNPDGIISLNLQGIILHINPSAEKILG 72

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
           Y S +++E     S +       + +    V+ +  + T       + +I       + +
Sbjct: 73  YTS-EELERKTITSII-------EAHISDQVLQFIKNTTADNQEEYILSIHHKDGYQIDV 124

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
                    Q   +     ++P +   RI ++ ++    +L +++++    +   + EG 
Sbjct: 125 VTKLVPIFIQKHLSGVYAIMKPLEKSERI-EKMLKESEKRLRTLMDSMPAFVIFKDHEGR 183

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVF----------LEQNTPSVMNHYLTEILSLDLRQ 523
            L  N      F +       K  +                       +  + +      
Sbjct: 184 WLEANDYALSCFDFHDVPYHGKKDSELVQYNEAYREAFLHCEQIDELAWQQKKIIHGEEF 243

Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
            + K T     +   + L              +   D++E K+ +  L  ++K+A     
Sbjct: 244 IIHKSTSNLILDLSKVPLF---HPDGSRKGLIVMGRDVTELKKTEKLLRKSEKLAVV--- 297

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
                 A ++HEIR PLTA+ GF  +++     P  + +   Y + +    + +  I + 
Sbjct: 298 --GQLTAGIAHEIRNPLTALKGFLTLLQ-----PDISEQNKWYIDVMLSEISQMESITSQ 350

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703
            + +SK +     L      +   + E ++ +   A      I     + +P I  D   
Sbjct: 351 FMAMSKPQ----VLSIHSHQIQSLIEEVVTFILPTAIMHSTHIIMDHLSTMPEIQCDGNQ 406

Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
           +KQ+ +N+L NAI   P GG I I T       +++R+ D G G+    + +  +PF   
Sbjct: 407 LKQVFINVLKNAIEAMPRGGNIFIQTKQVDENFILIRIIDEGCGIPEDRISRLGEPFY-- 464

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
                ++ +GTGLGL +   +++ + GK  I S   KGT ++I  P+  
Sbjct: 465 ----SLKEKGTGLGLMMCYKIIEEHYGKLQISSELNKGTTVDIRLPISP 509


>gi|323702488|ref|ZP_08114152.1| integral membrane sensor signal transduction histidine kinase
           [Desulfotomaculum nigrificans DSM 574]
 gi|323532627|gb|EGB22502.1| integral membrane sensor signal transduction histidine kinase
           [Desulfotomaculum nigrificans DSM 574]
          Length = 487

 Score =  290 bits (743), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 70/245 (28%), Positives = 122/245 (49%), Gaps = 3/245 (1%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L       EK+   + +F+  V+HEI+TPL  + GF+E + +            EY N 
Sbjct: 244 RLQEKISQLEKQEQIRREFVTNVAHEIKTPLAVMQGFTETMIDGLV--KTEQERDEYLNN 301

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I    N +  +VN++LD+ ++E G  +   EP  L E +      +   A EK I     
Sbjct: 302 ILEEINRLKRLVNEVLDLKRMEEGHFDFDQEPCDLREIIDRVRRKLTQLAVEKDIHFEIG 361

Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749
              N+P +  +   ++Q+ +N++ NAI  T +GG++I+  +  +N +V LR+ DTG G+ 
Sbjct: 362 VEKNLPLVTCNSDRIEQVLINLIDNAIRHTHTGGRVILRVSSKAN-QVHLRISDTGEGIA 420

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             +L    + F +   S+     GTGLGL + K +V+ + G+  + S    GT   I+ P
Sbjct: 421 PEDLPMIWERFYKGDKSRTRARGGTGLGLAIVKMIVEGHGGQINVDSKLNVGTTFNIVLP 480

Query: 810 LYDTS 814
           + + S
Sbjct: 481 VNNCS 485


>gi|309782952|ref|ZP_07677672.1| multi-sensor hybrid histidine kinase [Ralstonia sp. 5_7_47FAA]
 gi|308918376|gb|EFP64053.1| multi-sensor hybrid histidine kinase [Ralstonia sp. 5_7_47FAA]
          Length = 652

 Score =  290 bits (743), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 99/490 (20%), Positives = 179/490 (36%), Gaps = 23/490 (4%)

Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGG--LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA- 396
            L  AN    +       D I          +L    L      + + + R         
Sbjct: 22  RLETANLQADITLVDNETDFIAQLSARTFDAILADYMLPQFTGAEALDIARRMAPQTPFI 81

Query: 397 -------SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449
                        +         +              +       E       +  +  
Sbjct: 82  FVSGALGEEHAVDMLKRGATDYVIKQRLQRLP---VVLLRALAEAAERRQRIAAEAALRE 138

Query: 450 EVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
                  ++ A  +  +  ++ +GI+ + N A   + GY  EDIL K   +   Q     
Sbjct: 139 AETHFRLLINALKEHAVLSLDPQGIVRTWNAASRSILGYAREDILGKSAEILYPQAAREA 198

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEW 564
              +  ++  +    +L        K+        ++  +   +   +     + D +E 
Sbjct: 199 G-EFQRKLERVRREGSLTDDRWMLRKDGTPFYASSVVTAIHNETGQLVGFSKIIRDSTEE 257

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           +   + L  AK+ AE  +  K  FLA +SHE+RTPLT I+    +++ ++  P       
Sbjct: 258 RIAADALRRAKEEAETANHAKDHFLAVLSHELRTPLTPILTAVHLLELRQDLPAYAVAQ- 316

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
                + R+  L   +++DLLDI+ I  GK+ + F  V L   +   + + +     KR+
Sbjct: 317 --LEVVRRNAELEARLIDDLLDITGIARGKLAVSFALVDLYPLLESTLEISRNDMQAKRL 374

Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744
            ++T F     R+ AD   ++Q+  N++ NA+ FTP GG I +   + S   V + V+D 
Sbjct: 375 SLKTRFEAGRSRLYADGARIQQVIWNLVRNAVKFTPEGGAIEVRVWNPSASTVAVSVKDN 434

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTL 803
           G+G+    L +    F Q   S   R  G GLGL +A A+V  + G     S    +G  
Sbjct: 435 GIGIEPDALPRIFSAFEQADASITQRFGGLGLGLAIAYALVQKHEGSLIAESAGRHEGAT 494

Query: 804 IEIIFPLYDT 813
             +  PL   
Sbjct: 495 FTLTLPLATE 504



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/252 (11%), Positives = 69/252 (27%), Gaps = 10/252 (3%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK---RQNT 142
             ++D  G ++  +      +G     ++G    ++               L+   R+ +
Sbjct: 155 VLSLDPQGIVRTWNAASRSILGYAREDILGKS-AEILYPQAAREAGEFQRKLERVRREGS 213

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
                 +   +GT  Y    + A  I++   +  GF    I+  +  +       +R  +
Sbjct: 214 LTDDRWMLRKDGTPFYASSVVTA--IHNETGQLVGFSK--IIRDSTEERIAADALRRAKE 269

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
           +    +  K    +V   +    +  +P        ++      YA     +      L 
Sbjct: 270 EAETANHAKDHFLAVLSHELR--TPLTPILTAVHLLELRQDLPAYAVAQLEVVRRNAELE 327

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
                 L +        L           L  ++ E           SL   F+ G +  
Sbjct: 328 ARLIDDLLDITGIARGKLAVSFALVDLYPLLESTLEISRNDMQAKRLSLKTRFEAGRSRL 387

Query: 323 PETVDKCPIPFF 334
                +     +
Sbjct: 388 YADGARIQQVIW 399


>gi|163757504|ref|ZP_02164593.1| putative sensor histidine kinase protein [Hoeflea phototrophica
           DFL-43]
 gi|162285006|gb|EDQ35288.1| putative sensor histidine kinase protein [Hoeflea phototrophica
           DFL-43]
          Length = 869

 Score =  290 bits (743), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 113/721 (15%), Positives = 235/721 (32%), Gaps = 42/721 (5%)

Query: 110 AFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ--NTWYGKTTLWPIEGTNLYVPIDLAALP 167
             +++G            D     G  L+ +   +      L   +     + ++     
Sbjct: 159 PAEVLGNLSPATGAPQKPDDFLAFGRWLEPRSAASLNESIDLLRAQAERFDLIVETVRGH 218

Query: 168 IYSRNREFSGFRGFG-------IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKE 220
           +       SG R F        +          R         F  L ++    + +   
Sbjct: 219 VIEAQGRVSGGRAFVRFVALSNVRAELAELKTERDRLLASVDTFQTLLDVIDMPAWLRGS 278

Query: 221 KYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINL 280
              +    +           S   E           EK     + E    ++        
Sbjct: 279 DAKLLWVNNAYVRAVEGPDRSDTIERGMELLGTAAREKIRAAATPERPFLDRVSTVIQGH 338

Query: 281 NQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG- 339
            ++        ++     +   L       L            ET+D    P  ++    
Sbjct: 339 RRFL---EVADVKTPGGNAGLALDVSVEEDLREELRRTIQSHSETLDHLATPVAIFDRDQ 395

Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399
            L + N +F  L +   +  +         L+  +               ++        
Sbjct: 396 RLQFHNQAFQQLWEL-DIPFLARRPDNGEFLERLRADGKLPEPHAWRDWKEQ-------- 446

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI-- 457
           + ++  + E +  +  +P  +      N    G      +    K  +E +   L  +  
Sbjct: 447 MLSVYRSVETTPHLWHLPDGQTLNVFANAHPQGGVTWVFENLTEKVDLETKYNTLLQVQG 506

Query: 458 --LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
             ++  ++G+ +   +G I  +N +   L+G   E +        +              
Sbjct: 507 ETIDHLAEGVGVFGPDGRIRLSNPSFRALWGLTEEQVKPGTHIRDITAACEPSYREPDGW 566

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLS---LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572
            L      +  +         +L++   L   +  LP          ++++    +  L+
Sbjct: 567 KLFAGEITSFNEERRSRDGRIELVTGLILDYAVVPLPNGQTMVA-FVNVTDSVDAERMLT 625

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
              +   K  + K+DF+  VS+E+R+PLT IIGF++++K    G L   R  EY ++I  
Sbjct: 626 ETNEALRKADALKNDFVNHVSYELRSPLTNIIGFTDLLKTPGVGDLT-ERQAEYLDHIST 684

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
           S +++L IVND+LD++ +++G M L    V++D  +SEA   +  +  E  + + T  AN
Sbjct: 685 SSSVLLTIVNDILDLATVDAGIMQLEIAEVNIDTLLSEAADQIADWFKENGLKLETESAN 744

Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752
               ++ D + +KQI   +L NA +F P G  + +         ++  V D+G G+    
Sbjct: 745 APATMMGDYQRLKQILFKLLMNAANFAPEGSVVRLGCAMEDE-SIVFSVADSGPGIPESA 803

Query: 753 LEKAMKPFGQ----IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            +     F              G        + ++ V  + G   +  +   GT I   F
Sbjct: 804 RKDVFARFETHGQGGRRRGAGLGL------SIVQSFVSLHNGTVSVEDSEGSGTTILCRF 857

Query: 809 P 809
           P
Sbjct: 858 P 858


>gi|163745614|ref|ZP_02152974.1| multi-sensor hybrid histidine kinase [Oceanibulbus indolifex
           HEL-45]
 gi|161382432|gb|EDQ06841.1| multi-sensor hybrid histidine kinase [Oceanibulbus indolifex
           HEL-45]
          Length = 696

 Score =  290 bits (743), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 120/636 (18%), Positives = 234/636 (36%), Gaps = 77/636 (12%)

Query: 234 LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293
             + +++  L E      +     +          + + +D   I +           L+
Sbjct: 66  ADIFDQILKLRELATVVSENPTISQSEFSARATEFMADNQDVINIAVAPDLVVTIIHPLE 125

Query: 294 --NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP--------IPFFVYSHGNLFY 343
              +        +    P +    + GE L    VD            P F  + G    
Sbjct: 126 PNRSVLGLDYRQNEAQRPKVEQAMESGEGLVTGPVDLVQGGRGLILRHPVFYSNGGPDVE 185

Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL--SDNNAIKPVMLYRSDRTCIAASARLH 401
           AN  + +L+     D       +  L +   L   + +    V         I     ++
Sbjct: 186 ANRPWGILSMVLDYDAFVARLQIPELAEKYDLAIRELSPTGEVEQTIIGDPNINL---VN 242

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN------------KRKMEI 449
            I+ +   +  +  +     N +PE+ P   +                          ++
Sbjct: 243 PIELDFNFAFGVWQLAATVKNGWPEHRPDFWLHWLLRLQGAAGVTIFAWYIMRLAENRKL 302

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV--------EDILRKPFTVFL 501
              +L   +EA   G  + N +GI++  N    ++  Y          E I+R      +
Sbjct: 303 AEERLRMGIEALDHGFVMYNAKGILVLCNEKYREIHDYSEVVKPGSSYEKIVRDSIRRGI 362

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDI 561
             +       ++   L        E        + +++       +            D+
Sbjct: 363 VPDAVGKEEEWIRVWLEKRENGAFETE--QRMPDGRIIR---TSDRRMEDGSVVGLRIDV 417

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           ++ K+           AE  +  K+DF+  +SHE+RTPLT I+G   + ++    P    
Sbjct: 418 TDLKKA-------LLTAEDANKAKTDFMGVLSHELRTPLTVILGHVRLARHFDRTPAARD 470

Query: 622 ------------------------RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
                                   +  +    ++RSGN +L ++N++LD +KI++G +++
Sbjct: 471 LSTAIDADPQTRETLAPKLATTLSKLGDIMQTVERSGNHLLTLINEVLDFAKIDAGSLSI 530

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
             EPV +D+ V+  +  ++    +K + ++   A  +  +LAD + ++QI +N+LSNA  
Sbjct: 531 TMEPVQIDDIVAPTVDQLRPMIEDKGLELKVKSATGV--MLADGKRIQQILINLLSNATK 588

Query: 718 FTPSGGQIIISTTHTSNEEVI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
           F+  G    IS T     EV+  RV DTG+G+   ELE+  +PF Q+ ++   R  GTGL
Sbjct: 589 FSDQG---TISLTCRIRGEVVEFRVTDTGIGIPENELERVFEPFHQVDSTATRRFGGTGL 645

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
           GL +++ +  A+ G     S   KG+   +  PL  
Sbjct: 646 GLAISRDIATAHGGSLVATSIIGKGSSFLLTLPLRP 681


>gi|328954248|ref|YP_004371582.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfobacca acetoxidans DSM 11109]
 gi|328454572|gb|AEB10401.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfobacca acetoxidans DSM 11109]
          Length = 620

 Score =  290 bits (743), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 90/510 (17%), Positives = 173/510 (33%), Gaps = 53/510 (10%)

Query: 323 PETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
            E V+K  +  ++        Y N    +L  Y + + +     L+  +D+ +       
Sbjct: 6   REVVEKTHLGVWILDSQDRTLYTNDRLKVLLGYSAAEMLGR--SLAEFIDSSQC------ 57

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
             + L  S +            + + +N L +         +         +  +  + +
Sbjct: 58  --MRLLSSLKQSQPVLTDFCFRRRDGKN-LYLLLAANPFYARGGALHGTLIMVADITERK 114

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
           + +  +  +      I++   + +  ++ EG I S N    +LFGY   DI+ KP  +  
Sbjct: 115 LVEELLWRQAH----IVDQIYEAVISVDLEGFITSWNNGAERLFGYVARDIMGKPLLLLY 170

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLT 557
               P  +      +  L+++   E           L    + +  L           +T
Sbjct: 171 PTTDPEDLISS-QIMKVLEIKGLYEAELRLRRLSGDLFYAHLSLSPLKDREGRLIGVIVT 229

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
             DISE K  +N+L    K+              ++H+    LTAI+G   +        
Sbjct: 230 ARDISERKNLENELIRTSKL-----ESIGVLAGGIAHDFNNLLTAILGNIAMAS---LNA 281

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
              P  +E     +++     ++   LL  SK E  +  L     S+ + +  + SL+  
Sbjct: 282 DTKPFVLERLAEAEKACLRAQNLTRQLLTFSKGEKPRKKLA----SIGDLLKTSASLM-- 335

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII---------- 727
                 +  + +    +     D   ++Q   ++L NA    P GG I I          
Sbjct: 336 -LRSSNVRRQANIPEALWWAEVDEEQIQQAVNHLLINADQAMPQGGVIYIFAENFKIGEA 394

Query: 728 -STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
                T    + + +RD GVG+    L+K   PF            G+GLGL     ++ 
Sbjct: 395 SRLPLTPGTYIKITIRDQGVGILPEHLDKVFDPFFTTKR------RGSGLGLSTVYTIIK 448

Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
            + G   + STP  G    +  P      P
Sbjct: 449 NHDGYITVESTPNGGATFTVYLPASQKKGP 478



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 63/469 (13%), Positives = 121/469 (25%), Gaps = 33/469 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            W +D+       ++ L   +G  A +M+G  L +            +   LK+      
Sbjct: 16  VWILDSQDRTLYTNDRLKVLLGYSAAEMLGRSLAEFI---DSSQCMRLLSSLKQSQPVLT 72

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
                  +G NLY+   LAA P Y+R     G     +V           L  R      
Sbjct: 73  DFCFRRRDGKNLYLL--LAANPFYARGGALHGT--LIMVADITERKLVEELLWRQAHIVD 128

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS---SLTEYYAHKDDVLKTEKYPLL 262
            ++E      SV+ E +                +      L   Y   D         + 
Sbjct: 129 QIYE---AVISVDLEGFITSWNNGAERLFGYVARDIMGKPLLLLYPTTDPEDLISSQIMK 185

Query: 263 TSEESSLPEQE-DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
             E   L E E     ++ + +        L++        +      S     +     
Sbjct: 186 VLEIKGLYEAELRLRRLSGDLFYAHLSLSPLKDREGRLIGVIVTARDISERKNLENELIR 245

Query: 322 TPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
           T +          V + G     N     +    ++  +  A     +L+    ++   +
Sbjct: 246 TSKL-----ESIGVLAGGIAHDFNNLLTAILGNIAMASL-NADTKPFVLERLAEAEKACL 299

Query: 382 KPVMLYRSDRTCIAAS---ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
           +   L R   T         +L +I    + S ++         Q          E ++ 
Sbjct: 300 RAQNLTRQLLTFSKGEKPRKKLASIGDLLKTSASLMLRSSNVRRQANIPEALWWAEVDEE 359

Query: 439 DTRINKRKMEIEVMQLCSILEATSDG--IAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             +     + I   Q      A   G  I I      I   +R    L       I  + 
Sbjct: 360 QIQQAVNHLLINADQ------AMPQGGVIYIFAENFKIGEASR--LPLTPGTYIKITIRD 411

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
             V +       +               L  +       +  +++    
Sbjct: 412 QGVGILPEHLDKVFDPFFTTKRRGSGLGLSTVYTIIKNHDGYITVESTP 460


>gi|229005877|ref|ZP_04163571.1| hypothetical protein bmyco0002_28010 [Bacillus mycoides Rock1-4]
 gi|228755341|gb|EEM04692.1| hypothetical protein bmyco0002_28010 [Bacillus mycoides Rock1-4]
          Length = 513

 Score =  290 bits (743), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 90/529 (17%), Positives = 191/529 (36%), Gaps = 43/529 (8%)

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTK 353
           +S +   + +                +     +  P     +   G + + NPS   +  
Sbjct: 7   SSIQKSRHSAIPRRLRNHIQNCTLTEMYASLFEHNPDGIISLNLQGIILHINPSAEKILG 66

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
           Y S +++E     S +       + +    V+ +  + T       + +I       + +
Sbjct: 67  YTS-EELERKTITSII-------EAHISDQVLQFIKNTTADNQEEYILSIHHKDGYQIDV 118

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
                    Q   +     ++P +   RI ++ ++    +L +++++    +   + EG 
Sbjct: 119 VTKLVPIFIQKHLSGVYAIMKPLEKSERI-EKMLKESEKRLRTLMDSMPAFVIFKDHEGR 177

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVF----------LEQNTPSVMNHYLTEILSLDLRQ 523
            L  N      F +       K  +                       +  + +      
Sbjct: 178 WLEANDYALSCFDFHDVPYHGKKDSELVQYNEAYREAFLHCEQIDELAWQQKKIIHGEEF 237

Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
            + K T     +   + L              +   D++E K+ +  L  ++K+A     
Sbjct: 238 IIHKSTSNLILDLSKVPLF---HPDGSRKGLIVMGRDVTELKKTEKLLRKSEKLAVV--- 291

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
                 A ++HEIR PLTA+ GF  +++     P  + +   Y + +    + +  I + 
Sbjct: 292 --GQLTAGIAHEIRNPLTALKGFLTLLQ-----PDISEQNKWYIDVMLSEISQMESITSQ 344

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703
            + +SK +     L      +   + E ++ +   A      I     + +P I  D   
Sbjct: 345 FMAMSKPQ----VLSIHSHQIQSLIEEVVTFILPTAIMHSTHIIMDHLSTMPEIQCDGNQ 400

Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
           +KQ+ +N+L NAI   P GG I I T       +++R+ D G G+    + +  +PF   
Sbjct: 401 LKQVFINVLKNAIEAMPRGGNIFIQTKQVDENFILIRIIDEGCGIPEDRISRLGEPFY-- 458

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
                ++ +GTGLGL +   +++ + GK  I S   KGT ++I  P+  
Sbjct: 459 ----SLKEKGTGLGLMMCYKIIEEHYGKLQISSELNKGTTVDIRLPISP 503


>gi|15642449|ref|NP_232082.1| hybrid sensory histidine kinase BarA [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|153819819|ref|ZP_01972486.1| sensor histidine kinase/response regulator [Vibrio cholerae NCTC
           8457]
 gi|153823739|ref|ZP_01976406.1| sensor histidine kinase/response regulator [Vibrio cholerae B33]
 gi|227082574|ref|YP_002811125.1| sensor histidine kinase/response regulator [Vibrio cholerae M66-2]
 gi|229507487|ref|ZP_04396992.1| BarA sensory histidine kinase [Vibrio cholerae BX 330286]
 gi|229512318|ref|ZP_04401797.1| BarA sensory histidine kinase [Vibrio cholerae B33]
 gi|229519454|ref|ZP_04408897.1| BarA sensory histidine kinase [Vibrio cholerae RC9]
 gi|229606992|ref|YP_002877640.1| hybrid sensory histidine kinase BarA [Vibrio cholerae MJ-1236]
 gi|254849577|ref|ZP_05238927.1| sensor histidine kinase/response regulator [Vibrio cholerae MO10]
 gi|298500190|ref|ZP_07009995.1| sensor histidine kinase/response regulator [Vibrio cholerae MAK
           757]
 gi|9657030|gb|AAF95595.1| sensor histidine kinase/response regulator [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|126509638|gb|EAZ72232.1| sensor histidine kinase/response regulator [Vibrio cholerae NCTC
           8457]
 gi|126518744|gb|EAZ75967.1| sensor histidine kinase/response regulator [Vibrio cholerae B33]
 gi|227010462|gb|ACP06674.1| sensor histidine kinase/response regulator [Vibrio cholerae M66-2]
 gi|229344143|gb|EEO09118.1| BarA sensory histidine kinase [Vibrio cholerae RC9]
 gi|229352283|gb|EEO17224.1| BarA sensory histidine kinase [Vibrio cholerae B33]
 gi|229354992|gb|EEO19913.1| BarA sensory histidine kinase [Vibrio cholerae BX 330286]
 gi|229369647|gb|ACQ60070.1| BarA sensory histidine kinase [Vibrio cholerae MJ-1236]
 gi|254845282|gb|EET23696.1| sensor histidine kinase/response regulator [Vibrio cholerae MO10]
 gi|297540883|gb|EFH76937.1| sensor histidine kinase/response regulator [Vibrio cholerae MAK
           757]
          Length = 927

 Score =  290 bits (743), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 84/317 (26%), Positives = 147/317 (46%), Gaps = 14/317 (4%)

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568
           ++      L + +   +        K    +++ +    +           D+ E  ++ 
Sbjct: 211 VDRIRRGHLDVRIEGKMHGELDTLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQL 270

Query: 569 N----KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
                +L  AKK A++ +  KS+FLA +SHE+RTPL  +IGF+  +   +          
Sbjct: 271 EIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTN----SQA 326

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           +Y   I++S N +L I+ND+LD SK+E+GK+ L   P    E + E ++L    A+EK +
Sbjct: 327 DYLQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGL 386

Query: 685 LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT----SNEEVIL 739
            I       IPR ++ D   ++Q+  N++ N+I FT  G  I +S           ++  
Sbjct: 387 EITLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERG-NIDVSVEMRALRDDVIDLQF 445

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            VRDTG+G++  +  +  + F Q   S   R  GTGLGL + + +V    G+  + S   
Sbjct: 446 MVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLH 505

Query: 800 KGTLIEIIFPLYDTSHP 816
           +G+       L+ T  P
Sbjct: 506 QGSTFWFTLRLHTTELP 522


>gi|153214510|ref|ZP_01949419.1| sensor histidine kinase/response regulator [Vibrio cholerae 1587]
 gi|124115312|gb|EAY34132.1| sensor histidine kinase/response regulator [Vibrio cholerae 1587]
          Length = 927

 Score =  290 bits (743), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 84/317 (26%), Positives = 147/317 (46%), Gaps = 14/317 (4%)

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568
           ++      L + +   +        K    +++ +    +           D+ E  ++ 
Sbjct: 211 VDRIRRGHLDVRIEGKMHGELDTLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQL 270

Query: 569 N----KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
                +L  AKK A++ +  KS+FLA +SHE+RTPL  +IGF+  +   +          
Sbjct: 271 EIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTN----SQA 326

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           +Y   I++S N +L I+ND+LD SK+E+GK+ L   P    E + E ++L    A+EK +
Sbjct: 327 DYLQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGL 386

Query: 685 LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT----SNEEVIL 739
            I       IPR ++ D   ++Q+  N++ N+I FT  G  I +S           ++  
Sbjct: 387 EITLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERG-NIDVSVEMRALRDDVIDLQF 445

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            VRDTG+G++  +  +  + F Q   S   R  GTGLGL + + +V    G+  + S   
Sbjct: 446 MVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLH 505

Query: 800 KGTLIEIIFPLYDTSHP 816
           +G+       L+ T  P
Sbjct: 506 QGSTFWFTLRLHTTELP 522


>gi|310826953|ref|YP_003959310.1| hypothetical protein ELI_1361 [Eubacterium limosum KIST612]
 gi|308738687|gb|ADO36347.1| hypothetical protein ELI_1361 [Eubacterium limosum KIST612]
          Length = 933

 Score =  290 bits (743), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 86/322 (26%), Positives = 152/322 (47%), Gaps = 25/322 (7%)

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEE-KLLSLRIIIKKLPFSSCYSLTM--HDIS 562
            +    +L   LSL+     E        +    +  R  I ++       +     +I+
Sbjct: 462 RAGSPDFLRYALSLEQP-VYEIDFRRIYPDGLYWVRSRFSIAEIRDGEVTKVIFANMNIN 520

Query: 563 EWKQEKNKLSHAKK--------IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
           E K E+ +     +         A+  +  KS FLA++SH+IRTP+ AIIG S +  +Q 
Sbjct: 521 EQKLEEMEQEEQNRKVLLAAYEAAKTANEAKSSFLAQMSHDIRTPMNAIIGMSSIAASQI 580

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
             P    +  +    I+ S   +L ++N++LD+SKIE GK+ L  EP  L E + +  ++
Sbjct: 581 NNP---QKVKDCLEKINLSSKHLLALINEILDMSKIEKGKIALAEEPFCLSEVIEDISAM 637

Query: 675 VQLYANEKRILIRT---SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
           V+  A EK   +        +NI  ++ D   ++Q+ LN++SNAI +T +GG+I+++   
Sbjct: 638 VRTEAAEKNHELTVIIKDIEHNI--LIGDAGRIRQVLLNLISNAIKYTLNGGEILLTVQE 695

Query: 732 TSN-----EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
            S         +  V D G+GM    L+    PF +  + Q  + +GTGLG+ +++ +V 
Sbjct: 696 VSGKISGYGSFVFTVEDNGIGMDEDFLDYIFVPFSRAEDPQVQKIQGTGLGMSISQKIVA 755

Query: 787 ANMGKFYIFSTPAKGTLIEIIF 808
           A  G   + S   KG+   +  
Sbjct: 756 AMQGNIQVESEKGKGSRFVVTL 777


>gi|260364062|ref|ZP_05776785.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030]
 gi|260879934|ref|ZP_05892289.1| histidine kinase [Vibrio parahaemolyticus AN-5034]
 gi|260894610|ref|ZP_05903106.1| histidine kinase [Vibrio parahaemolyticus Peru-466]
 gi|308086459|gb|EFO36154.1| histidine kinase [Vibrio parahaemolyticus Peru-466]
 gi|308091851|gb|EFO41546.1| histidine kinase [Vibrio parahaemolyticus AN-5034]
 gi|308114097|gb|EFO51637.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030]
          Length = 878

 Score =  290 bits (743), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 83/266 (31%), Positives = 136/266 (51%), Gaps = 16/266 (6%)

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
               + E +++ +++ HAK+ A   +  KS FLA +SHEIRTPL  I+G +E++      
Sbjct: 351 VNRVVEEKQRQTHEILHAKESAVAANRAKSVFLANMSHEIRTPLNGIMGMTEILSQSELS 410

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
           P       E  + ID S + +L ++ND+LD+SKIESG++ L      + E V +++ L Q
Sbjct: 411 P----HQQEVVDDIDTSSHTLLALLNDILDLSKIESGRLELSLVEADIREVVYQSVILFQ 466

Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS-- 733
             A  K++ +  S   NIP R++ D   +KQI  N++SNA+ FT  G  I++  ++    
Sbjct: 467 SKATSKQLELDISLDENIPARVMVDDHRIKQIITNLVSNAVKFTEQG-YILVDVSYEEAL 525

Query: 734 ---NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
                 +   ++D+G+G+   +L    +PF Q       +  GTGLGL + + +V    G
Sbjct: 526 EQGRGSLTFLIKDSGIGIERDKLATIFEPFTQEDEGVSRQFGGTGLGLAICRQLVSMMGG 585

Query: 791 KFYIFSTPAKGTLIEII-----FPLY 811
           K    ST   GT           PL+
Sbjct: 586 KLVATSTKGVGTCFGFSIEVEALPLF 611


>gi|94499024|ref|ZP_01305562.1| sensory box histidine kinase/response regulator [Oceanobacter sp.
           RED65]
 gi|94428656|gb|EAT13628.1| sensory box histidine kinase/response regulator [Oceanobacter sp.
           RED65]
          Length = 553

 Score =  290 bits (743), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 76/259 (29%), Positives = 129/259 (49%), Gaps = 9/259 (3%)

Query: 555 SLTMHDISEWKQEKNKLSHAKKI---AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
             +  DI      + ++  A++    A   +  KS FLA +SHEIRTPL  I+G ++++ 
Sbjct: 156 LRSYRDIRRAADLQKQIMLAEQESMTAAAANEAKSQFLAHMSHEIRTPLNGILGLTDILA 215

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
             +     N   +E+   I  SG  +L I+ND+LD SKIE+GK+ L     SL     + 
Sbjct: 216 QTQL----NENQLEFIKTIRHSGEALLAIINDILDFSKIEAGKLELESIDFSLPTLCDDL 271

Query: 672 ISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSG-GQIIIST 729
             L      +K +    +   NIP  L  D   +KQ+ LN++SN++ FT  G  ++ I  
Sbjct: 272 EGLFISQVQDKGLQFDINLDPNIPEFLNGDPLRIKQVLLNLISNSLKFTHEGYVKLDIRQ 331

Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
           +  +   +  +V D+G+G++  + ++  KPF Q+ +S   +  GTGLGL +++ +V    
Sbjct: 332 SQATPLVLEFKVSDSGIGISEEKQDQLFKPFTQVDSSTTRKYGGTGLGLQISQRLVQLMG 391

Query: 790 GKFYIFSTPAKGTLIEIIF 808
           G   + S   KG+      
Sbjct: 392 GNIRLHSQVDKGSTFIFDL 410


>gi|186685045|ref|YP_001868241.1| PAS/PAC sensor signal transduction histidine kinase [Nostoc
           punctiforme PCC 73102]
 gi|186467497|gb|ACC83298.1| PAS/PAC sensor signal transduction histidine kinase [Nostoc
           punctiforme PCC 73102]
          Length = 449

 Score =  290 bits (743), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 83/387 (21%), Positives = 160/387 (41%), Gaps = 19/387 (4%)

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            ++ +  +  +   + E   D   + +  G+I   N A   +       +L K   +F+ 
Sbjct: 67  AQQSLIAQGQRYQELFEEVPDAYLVTDPRGVIQEANSAAQNMLNISKNFLLGKALGIFVL 126

Query: 503 QNTPSVM---NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL--- 556
           +           +L++       +  E       + +  +   + +  +       +   
Sbjct: 127 EKELIAFHLKLTHLSDRAETPDWKMQEWEVNLRPRNKTPIIAAMKVAAIRNQQGNLVGLR 186

Query: 557 -TMHDISEWKQEKNKLSHAKKIAEKE-------SSHKSDFLARVSHEIRTPLTAIIGFSE 608
             + DISE K+ + KL  A++   +        S  KS  L   SHE R PLT I   +E
Sbjct: 187 WLVRDISESKRLQAKLQWAEEAMRQALAKEREFSELKSRLLTTASHEFRNPLTTIHSSAE 246

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
            +         + R   +   I  S   +  ++NDLL +++ E+GK+  +  P++L E  
Sbjct: 247 -LLEHYRHLWSDERQQIHLRRIQTSVMHITQLLNDLLVLNQDETGKLEFNPTPLNLVEFC 305

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
            + +  ++  ++  +  I  S     P    D + ++QI  N+ SN + ++P G  +  S
Sbjct: 306 RDLLEELE-QSDRSQHAIVFSSECQCPSANLDAKLLRQILTNLFSNCLKYSPIGSTVKFS 364

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
            T T+NE  I + +D+G+G+   ++E   +PF +   S      G GLG+ + K  VD +
Sbjct: 365 VT-TANERAIFQTQDSGIGIPPADIEHIFEPFHRA--SNTGNIPGMGLGMSIVKQGVDLH 421

Query: 789 MGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            G+  + S    GT   +I P     H
Sbjct: 422 GGEIIVESAIDAGTTFTVILPFSRDLH 448


>gi|229168357|ref|ZP_04296082.1| hypothetical protein bcere0007_33140 [Bacillus cereus AH621]
 gi|228615183|gb|EEK72283.1| hypothetical protein bcere0007_33140 [Bacillus cereus AH621]
          Length = 516

 Score =  290 bits (743), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 98/531 (18%), Positives = 194/531 (36%), Gaps = 40/531 (7%)

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTK 353
           +S +   + +                +     +  P     +   G + + NPS   +  
Sbjct: 13  SSTQKKRHPNVSERLRNHIQNRSLAEMYASLFEHNPDSIISLNLEGVILHINPSAERILG 72

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
           Y S + +E     S L       + +    V+ Y  +         + +I       L +
Sbjct: 73  YTSNE-LERKTITSIL-------EAHISDQVLQYIKNTAADNQKEYIVSIYHKDGYLLDV 124

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
                    +         ++P +   RI ++ ++    +L +++ +    +   + EG 
Sbjct: 125 VTKLVPIFVKNRLTGVYAIMKPLEKSERI-EKVLQESEKRLRTLMNSMPAFVIFKDHEGR 183

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV----MNHYLTEILSLDLRQTLEKIT 529
            L  N      F +       K     ++ N            + E+     +    +  
Sbjct: 184 WLEANDYALSCFNFHNVPYHGKKDNELIQYNEAYRESFLHCEEVDELTWQKGQILHGEEF 243

Query: 530 LGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
           +    +  L+ L I    L           +   D++E K+ +  L  ++K+A       
Sbjct: 244 IIHRNDFDLV-LSISKVPLFHPDGSRKGLIVMGRDVTELKETEKLLRKSEKLAVV----- 297

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
               A ++HEIR PLT++ GF  ++      P  N     Y + +    + +  I +  +
Sbjct: 298 GQLTAGIAHEIRNPLTSLKGFLTLL-----HPEINEENKWYVDVMLSEISQMESITSQFM 352

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
            +SK +     L     ++   + E ++ +   A    + I     + I  I  D   +K
Sbjct: 353 AMSKPQ----VLSIHTCNVQTLIEEVVTFILPTAVMHSVHIIMDHFDYISDIQCDSNQLK 408

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           Q+ +NIL NAI   P GG I I T    N+ V +R+ D G G+    + +  +PF     
Sbjct: 409 QVLINILKNAIEAMPDGGNIFIQTASLENDFVSIRIMDEGCGIPEERMARLGEPFY---- 464

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
              ++ +GTGLGL +   ++  + GK +I S    GT ++I  P+  T+ P
Sbjct: 465 --SLKEKGTGLGLMMCYKIIQEHHGKLFISSELNIGTTVDIQLPIA-TAQP 512



 Score = 43.9 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 22/257 (8%), Positives = 64/257 (24%), Gaps = 16/257 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ++  G +  I+    + +G  + ++    +  + +    D            N      +
Sbjct: 54  LNLEGVILHINPSAERILGYTSNELERKTITSILEAHISDQVLQYIKNTAADNQKEYIVS 113

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           ++  +G    + +    +PI+ +NR  +G   + I+           + +  +K+   L 
Sbjct: 114 IYHKDG--YLLDVVTKLVPIFVKNR-LTGV--YAIMKPLEKSERIEKVLQESEKRLRTLM 168

Query: 209 EIKKGHSSVEKEKYDIFSQQSPP-----PHLRMKNKVSSLTEYYAHKDDVLK----TEKY 259
                    +  +                H    +          ++          E  
Sbjct: 169 NSMPAFVIFKDHEGRWLEANDYALSCFNFHNVPYHGKKDNELIQYNEAYRESFLHCEEVD 228

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
            L   +   L  +E     N            L +        +      +     ++  
Sbjct: 229 ELTWQKGQILHGEEFIIHRNDFDLVLSISKVPLFHPDGSRKGLIVMGRDVTELKETEKLL 288

Query: 320 NLTP--ETVDKCPIPFF 334
             +     V +      
Sbjct: 289 RKSEKLAVVGQLTAGIA 305


>gi|298490004|ref|YP_003720181.1| GAF sensor signal transduction histidine kinase ['Nostoc azollae'
           0708]
 gi|298231922|gb|ADI63058.1| GAF sensor signal transduction histidine kinase ['Nostoc azollae'
           0708]
          Length = 640

 Score =  290 bits (743), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 75/259 (28%), Positives = 132/259 (50%), Gaps = 12/259 (4%)

Query: 561 ISEWKQEKNKLSHAKKIAEKE--------SSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
           +++ KQ   +    + +A +E        +  +S+FLA +SHE+ TPLT +IG S  +  
Sbjct: 380 LTKQKQTLEQRVIERTMALQEALLAAEAANRLRSEFLATISHELLTPLTYVIGMSSTLLL 439

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
              G L   R  +Y   I  SG  +L+++ND+LD+S++E+G+  L+    SL ++    +
Sbjct: 440 WPLGELSK-RQRDYLQTIHDSGEHLLEMINDILDLSQVEAGRTVLNITDFSLVKSAQNTL 498

Query: 673 SLVQLYANEKRILIRTSFA--NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
             +   A  +++ ++       +      D   V+QI  N+L+NAI FTP GG + +   
Sbjct: 499 DSLLEKARSEKVTLKLDLQINPSHDSFTGDSTRVEQILWNLLTNAIKFTPEGGNVTLRLW 558

Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
                  I +V DTG+G+   +L    + F Q+    + R EGTG+GL L K +V+ + G
Sbjct: 559 VED-ATAIFQVEDTGIGIPEEQLPLLFEKFQQLDTPYRRRYEGTGVGLALTKQLVELHRG 617

Query: 791 KFYIFSTPAKGTLIEIIFP 809
           +  + ST   G++  +  P
Sbjct: 618 RIEVESTVGIGSIFTVWIP 636


>gi|163793735|ref|ZP_02187709.1| Signal transduction histidine kinase [alpha proteobacterium BAL199]
 gi|159180846|gb|EDP65363.1| Signal transduction histidine kinase [alpha proteobacterium BAL199]
          Length = 1233

 Score =  290 bits (743), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 127/789 (16%), Positives = 237/789 (30%), Gaps = 82/789 (10%)

Query: 75  VFDPIPRTVR------FTWNIDAHGYLKEISEELPKTIGNY--------AFKMIGMRLCD 120
            F P  R +            D     +     + +  G              IG    D
Sbjct: 41  AFTPEHRPLMRDNLMVLVPEGDGEFRYQYYGAAIARRAGFDMTSQSTRDFDSTIGRFFRD 100

Query: 121 VSDI--LHIDPNNHIGDLLKRQNTWYGKTTLWPI-EGTNLYVPIDLAA-----LPIYSR- 171
              +      P   +      +     +  + P+ + T   + +   A       ++   
Sbjct: 101 KYAVCLTTQRPIYTLHQADHAKAVLSWERLILPVMDATGQPLIVCFNAPLDNKADVFDAL 160

Query: 172 -----NREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFS 226
                +        FG            A  +  +   +   ++          +    +
Sbjct: 161 MKNSLDGIMLMRPAFGADGEIEDFTVMVANQRAAEILGTTPDDLTGSGMIARYPRTRRTT 220

Query: 227 QQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKK 286
              P          +         + +    +     + +  +    D   I   Q   +
Sbjct: 221 F--PRYCRIWAGDGAERFTVDYRPEGMPAVFQVSACRATDRLVVTLADITEIAETQAVLE 278

Query: 287 QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYAN 345
           +    L+   +                  +E  N     ++  P  F ++     L   N
Sbjct: 279 KQQRQLEEAVQS---------RTIAQRREEEARNRLIGAIEALPDGFALFDTDDRLALFN 329

Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405
            +++ + K      +   G  +   D  +        P  L   D        R+   Q 
Sbjct: 330 QTYIEMYKASG--ALIKLG--TRFEDGIRYGVEQGQYPQALSHPDGPEAWVRERVERHQN 385

Query: 406 NRENS--LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
                              +   N    G   +    +     ++    +L  I   ++D
Sbjct: 386 PEGPIEQRLPDGRWARVWERRTPNGEIVGFRVDITWQKQVSETLQ----RLQEI--GSND 439

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDIL--------------RKPFTVFLEQNTPSVM 509
               ++    +        ++ G  V  IL                              
Sbjct: 440 A---LDPADRLAKATDLTLEMTGLDVGAILKAVGDGRYQIIAASGVALPGVSVGYIVRAE 496

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE------ 563
                +   L +   L        ++  LLSL      + FS         I+       
Sbjct: 497 ADGRDDTTLLPINPPLHVPVTVDGRDAGLLSLGSTSGTVEFSDRQRDLAERIAHWIGIEV 556

Query: 564 -WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
             ++  ++L  AK+ AE  S  KS FLA +SHEIRTP+  ++G   ++            
Sbjct: 557 SRQEALDELRRAKEEAEAASEAKSRFLAMMSHEIRTPMNGVLGMIGLVLRSELTA----E 612

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                    +S + +L I+ND+LD SK+ESG+++L      L + +S    L+   A  K
Sbjct: 613 QRSMITLAKQSADNLLMILNDILDFSKLESGRLDLEEVEFDLADVISSVAELLSPQAEAK 672

Query: 683 RILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
            + I +     +      D   ++QI +N++ NA+ FT SG  I+I       +EV   V
Sbjct: 673 GLDIISFIDTRMTLARLGDPGRLRQILINLVGNAVKFTGSGS-IVIRLEPADGDEVRFDV 731

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            DTG+G+    L    + F Q  +S   R  GTGLGL + + +     G   + ST   G
Sbjct: 732 IDTGIGIPADTLPLLFQEFTQADSSVSRRFGGTGLGLAICERLTRLLGGTISVTSTEGTG 791

Query: 802 TLIEIIFPL 810
           +   +I PL
Sbjct: 792 STFSVIIPL 800


>gi|42781721|ref|NP_978968.1| hypothetical protein BCE_2662 [Bacillus cereus ATCC 10987]
 gi|42737644|gb|AAS41576.1| hypothetical protein BCE_2662 [Bacillus cereus ATCC 10987]
          Length = 595

 Score =  290 bits (743), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 92/508 (18%), Positives = 176/508 (34%), Gaps = 41/508 (8%)

Query: 314 YFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                E      +   P+    +  +G+    N    ++T Y + + I     L  L   
Sbjct: 107 LLTRKEEELHTILQNMPVMVDALDYNGDFVLWNRECEIVTGYTAEEVIGNPNALRLLYPD 166

Query: 373 PKLSDNNAIKPVML----YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
                    K +         +      +  + TI W+                      
Sbjct: 167 HDYRHEIQKKFLTRGKNFRDWEMRLTCKNGEIKTIMWSN-----------ISEQFPVSGF 215

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
               +  +    +  + K++ +  +L  I +A  D   +   +G I+         F  P
Sbjct: 216 SYWAVGVDITHLKAIEEKLKQQTSELELIFQALPDLCFLTEDDGTIIDYKAGSPTKFYVP 275

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            E  + K F   L           + ++        +E         E +         L
Sbjct: 276 AEAFMGKKFXEVLPSTVAKKFQEAICQVKEKGTNVIVEYPLTI---NESINFFEARCLPL 332

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                  + + DI+E K+ +  L+ +  +A           A V+HE+R PLT I GF +
Sbjct: 333 LHDK-IMIIVRDITERKKTEELLNKSDTLA-----AIGQLAAGVAHEVRNPLTVIKGFIQ 386

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
                    +      +Y + +      +  I+ + L I+K +     L  E  +L +  
Sbjct: 387 ------LFQINKEDQEKYFDLMLSEIERIEAILQEFLSIAKTD----ELSTEKKNLYQIF 436

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
              +SL+   A    I +     +    I      +KQ+ +NIL N+I   P GG+I I 
Sbjct: 437 KNVVSLINTKAIMTNIQVELYADSKDIIIECSENQLKQVFINILQNSIEAMPDGGRISIH 496

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                 + +I+ V D G+G+    +++  +PF         + +GTG+GL L+  +++++
Sbjct: 497 IKEIGKDGIIINVIDKGIGIPEERIKRLGEPFY------STKEKGTGIGLMLSYKIIESH 550

Query: 789 MGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
            G   I S    GT + I  P + +  P
Sbjct: 551 QGNISIMSEVGVGTTVTIYLPKFQSKKP 578


>gi|304309740|ref|YP_003809338.1| predicted histidine kinase [gamma proteobacterium HdN1]
 gi|301795473|emb|CBL43671.1| predicted histidine kinase [gamma proteobacterium HdN1]
          Length = 895

 Score =  290 bits (743), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 73/247 (29%), Positives = 123/247 (49%), Gaps = 10/247 (4%)

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + + K+    +  EK +  KS+FLA +SHEIRTP+  ++G +E++     G   N R  +
Sbjct: 355 ELEQKVEERTRKLEKANQAKSEFLANMSHEIRTPMNGVLGMTELLL----GTELNTRQQQ 410

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           Y   I  S   +L I+ND+LD SKIE+GK+ L   P +L+  V +  ++  L   +K I 
Sbjct: 411 YTRTIHNSALSLLGIINDILDYSKIEAGKLELESVPFNLEILVDDCTAIFSLKCAQKPIQ 470

Query: 686 IRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILR 740
           + +  A   P  ++ D   ++QI +N+  NA  FT  G +I I      +      +   
Sbjct: 471 LTSRIAPGTPIDLVGDPTRLRQILINLTGNAFKFTEKG-EICIGIEFLEDHSKQVRLKFS 529

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           +RD+G+G++  ++ K  + F Q   S   +  GTGLGL + K + +   G+  + S    
Sbjct: 530 IRDSGIGLSEEQIGKLFQSFSQADTSTTRKYGGTGLGLAICKQLAELMEGEIGVDSRLGH 589

Query: 801 GTLIEII 807
           G      
Sbjct: 590 GATFWFT 596


>gi|302341710|ref|YP_003806239.1| PAS/PAC sensor signal transduction histidine kinase [Desulfarculus
           baarsii DSM 2075]
 gi|301638323|gb|ADK83645.1| PAS/PAC sensor signal transduction histidine kinase [Desulfarculus
           baarsii DSM 2075]
          Length = 798

 Score =  290 bits (743), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 95/779 (12%), Positives = 228/779 (29%), Gaps = 68/779 (8%)

Query: 70  SENTFVFDPIPRTVRFTWNIDAHGYLKEI-------SEELPKTIGNYA---FKMIGMRLC 119
           + + F  D         W   A   +          ++ + +  G       + +     
Sbjct: 36  TGSYFGADAGALA---MWQTGAQLAVCSTWAFTQAQAKRMRRVFGAPPVCPGEPLARIGA 92

Query: 120 DVSDILHIDPNNHIG-----DLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNRE 174
            +        +  +        L ++N        W  +G+     +     P +     
Sbjct: 93  RLLAPQEPVDSGWLALDQYVSTLNQRNYLGVLPLPW-AQGSGACFLV-FKQQPQWDEEEA 150

Query: 175 FSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP-- 232
            +G     I+ ++   N   A+  R    +  + +  +    +                 
Sbjct: 151 RAGAN-VLILSLSSAFNRSLAV--RHSDDYRRIFQYSRDMIYISSRDGRWVDVNEAGVKM 207

Query: 233 -HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291
                  +V +  +         +     +   E        +      +         +
Sbjct: 208 LGYDSVEEVLAEPDLGKAAYFKPQDRAAFMEAIERDGYVLDYEVAFKRKDGTPIDVAITS 267

Query: 292 LQNNSKESFEYL-----SHRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYAN 345
                                         + + +    ++  P+  FV      + Y N
Sbjct: 268 QVREIDGKVVGYEGIIKDITRRKRAEVRAAQQQRMLESILEVMPVAVFVLDRDHTVRYWN 327

Query: 346 PSFLLLTKYKSVDDIE------------IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393
            +   LT +   D +E                   +LD              L  S    
Sbjct: 328 RACEELTGWNKSDILETDRVWEVFHRPRGVSLADVILDGDNERLQKFYSKERLRPSPLAE 387

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
            A  A  H        +  + F      +   + +       +    +  +R++      
Sbjct: 388 DAWEAEAHFGNL-GGKARELFFTAAPLKDSGGQIIGAVEAIVDSSQIKKLERRLAESEAL 446

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
             +++E+  +GI + + +  I+  N +  ++FG      +R      L+         ++
Sbjct: 447 YRTLVESNREGICLQD-DQRIIFANSSFMEMFGLSDVGGVRGGILELLDPGCKKEYLQWM 505

Query: 514 TEI-LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKNK 570
             +       +  E   L   ++     L I +      S   +   + D++  K  + +
Sbjct: 506 RAVWSEDGCDRVFEGQGL---RDGLPFDLEITVGATEHGSRPAWLFNVRDVTFRKAIEEQ 562

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           L  ++++A             V+HE+  PL  I+ ++ ++                   I
Sbjct: 563 LIRSERLA-----ATGKLAFDVAHEVNNPLGGILTYAHLMAEDMGEA---SELYPMVEKI 614

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
            +  N    IV  LLD ++ +        E + ++  + E +SL++ +   + + +   F
Sbjct: 615 IKLTNRCRIIVRGLLDFARRD----EPQKEAMDINRVLKETLSLMEGHMILRNVQVVEDF 670

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
              +P        ++Q+ LN+L NA       G++ I T   +   + ++  D+G GM  
Sbjct: 671 DQGLPYFYGHRSKLEQVFLNMLVNAAEAMEGRGRLDIRTMAHNGGAIEIQFADSGPGMDE 730

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             + +  +PF       +  G G      ++  ++  + G   + S    GT   I+ P
Sbjct: 731 EAVGRVFEPFYTTKGRGRGTGLGL----SISHGIIKQHGGTIAVESVKGLGTTFRIVLP 785


>gi|300903601|ref|ZP_07121519.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           MS 84-1]
 gi|300948914|ref|ZP_07162976.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           MS 116-1]
 gi|300958904|ref|ZP_07171008.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           MS 175-1]
 gi|301306548|ref|ZP_07212611.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           MS 124-1]
 gi|301647690|ref|ZP_07247484.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           MS 146-1]
 gi|300314467|gb|EFJ64251.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           MS 175-1]
 gi|300404337|gb|EFJ87875.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           MS 84-1]
 gi|300451610|gb|EFK15230.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           MS 116-1]
 gi|300838208|gb|EFK65968.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           MS 124-1]
 gi|301074220|gb|EFK89026.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           MS 146-1]
 gi|315255154|gb|EFU35122.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           MS 85-1]
          Length = 593

 Score =  290 bits (743), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 94/467 (20%), Positives = 199/467 (42%), Gaps = 30/467 (6%)

Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
            +   +   +I      + L +  +         +++  +    I+    +   +    N
Sbjct: 143 SMLPIERNGEILGYIWANELTEDIRRQAWKMDVRIIIVLTAGLLISLLLIVLFSRRLSAN 202

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN--KRKMEIEVMQLCSILEATSDGIAI 467
              +T      A   P  +PQ   E   +   +N   + +         I+E  +DG+  
Sbjct: 203 IDIITDGLSTLAQNIPTRLPQLPGEMGQISQSVNNLAQALRETRTLNDLIIENAADGVIA 262

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
           I+R+G + + N A   + GY   +++ +P+++       +     + + L          
Sbjct: 263 IDRQGDVTTMNPAAEVITGYQRHELVGQPYSMLF---DNTQFYSPVLDTLEHGTEHV-AL 318

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
                 ++ + + L +   ++  +        +   D++  K+ + +++ A+++A     
Sbjct: 319 EISFPGRD-RTIELSVTTSRIHNTHGEMIGALVIFSDLTARKETQRRMAQAERLAT---- 373

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
              + +A V+HE+R PLTAI G+ ++++ Q   P+    + EY + + +  + +  ++  
Sbjct: 374 -LGELMAGVAHEVRNPLTAIRGYVQILRQQTSDPI----HQEYLSVVLKEIDSINKVIQQ 428

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703
           LL+ S+    +    ++ VSL+  V E + LVQ    + R+   +   N +  I AD   
Sbjct: 429 LLEFSRPRHSQ----WQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSPINADREL 484

Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
           +KQ+ LNIL NA+    + G+I I T   S+ +  + + D G G+     +K   PF   
Sbjct: 485 LKQVLLNILINAVQAISARGKIRIQTWQYSDSQQAISIEDNGCGIDLSLQKKIFDPFFTT 544

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             S      GTGLGL L++ +++A+ G   + S P  G    +I P+
Sbjct: 545 KAS------GTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILPI 585



 Score = 40.4 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/117 (10%), Positives = 37/117 (31%), Gaps = 6/117 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G +  ++       G    +++G     +    +    + + D L+          
Sbjct: 263 IDRQGDVTTMNPAAEVITGYQRHELVGQPYSMLF--DNTQFYSPVLDTLEHGTEHVALEI 320

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
            +P     + + +  +   I++ + E  G     I        + +    + ++  +
Sbjct: 321 SFPGRDRTIELSVTTS--RIHNTHGEMIGA--LVIFSDLTARKETQRRMAQAERLAT 373


>gi|75907391|ref|YP_321687.1| multi-sensor signal transduction histidine kinase [Anabaena
           variabilis ATCC 29413]
 gi|75701116|gb|ABA20792.1| multi-sensor signal transduction histidine kinase [Anabaena
           variabilis ATCC 29413]
          Length = 676

 Score =  290 bits (743), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 79/259 (30%), Positives = 131/259 (50%), Gaps = 12/259 (4%)

Query: 561 ISEWKQEKNKLSHAKKIAEK--------ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
           +++ K    +    + +A +         S  +S+FLA +SHE+ TPLT +IG S  +  
Sbjct: 414 LTQEKHTLEQRVIERTMALRDALLAAEAASRLRSEFLATISHELLTPLTYVIGMSSTLLR 473

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
              G L   R  +Y   I  SG  +LD++ND+LD+S+IE+GK  L+    SL +     I
Sbjct: 474 WPLGELS-QRQRDYLQTIHDSGEHLLDMINDILDLSQIEAGKTVLNIAEFSLIKVAENTI 532

Query: 673 SLVQLYANEKRILIRTSF--ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
             +   A  +++ ++          R  AD   ++QI  N+L+NAI FTP GG + +   
Sbjct: 533 ESLVEKALSEKVNLKLDLQIDPRRDRFTADAARIEQILWNLLTNAIKFTPEGGNVTLRVW 592

Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
              +  +  +V DTG+G+   +L    + F Q+    + R EGTGLGL L K +V+ + G
Sbjct: 593 VEEDTSI-FQVEDTGIGIPEEQLPLLFEKFQQLDTPYRRRYEGTGLGLALTKQLVELHRG 651

Query: 791 KFYIFSTPAKGTLIEIIFP 809
           +  + ST   G++  +  P
Sbjct: 652 RIEVESTVGIGSIFTVWIP 670


>gi|311696246|gb|ADP99119.1| multi-sensor signal transduction histidine kinase [marine bacterium
           HP15]
          Length = 439

 Score =  290 bits (743), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 79/407 (19%), Positives = 162/407 (39%), Gaps = 34/407 (8%)

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR-----INKRKMEIEVMQLCSILEATS 462
              L          ++ P+++   G   +++          + ++  ++ ++     A  
Sbjct: 48  ARRLYQWLSNPSATDEAPQSIGLWGDIFDNLHKLHQTHLRTQDRLRAQINRVQESTNAMR 107

Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522
           DG+ + +  G +   N +   L G+       +     +                S D R
Sbjct: 108 DGVIMTDSRGAMEWWNGSAEYLLGFRRNTDQGQYIHNLIRTPAFKTYFD------SRDYR 161

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES 582
           + LE  +         + L+I I          +   D++   Q +              
Sbjct: 162 EPLEIHSPARPH----IHLQIQISLFGDDDR-LIVAKDVTRLYQLE-------------- 202

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
             + DF+  VSHE+RTPLT I G+ E + +        P++    N +    + +  ++ 
Sbjct: 203 QMRRDFVGNVSHEMRTPLTVISGYLETLVDNAAD--LPPKWRRAINTMAAQSSRMEALIT 260

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702
           DL+ +S+IE+G+  ++     +D+ +++     +  + EK+  I      +   +  D  
Sbjct: 261 DLILLSRIETGEQTVNDTLTDVDQLLTQICHDARALSGEKQHEITVHI-GDHRLLKGDES 319

Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
            ++    N++ NA+ +TP+ GQII+S +        L VRDTG+G+    + +  + F +
Sbjct: 320 QLRSAFSNLIFNAVKYTPANGQIIVSWSTNREG-AHLSVRDTGIGIDPVHIPRLTERFYR 378

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
              S+     GTGLGL + K ++  + G   I S   +G+     FP
Sbjct: 379 ADPSRHKDTGGTGLGLAIVKHVLLNHDGNLEIRSRIGEGSEFICHFP 425


>gi|315122620|ref|YP_004063109.1| two-component sensor histidine kinase protein [Candidatus
           Liberibacter solanacearum CLso-ZC1]
 gi|313496022|gb|ADR52621.1| two-component sensor histidine kinase protein [Candidatus
           Liberibacter solanacearum CLso-ZC1]
          Length = 709

 Score =  290 bits (743), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 114/438 (26%), Positives = 211/438 (48%), Gaps = 31/438 (7%)

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459
           +  + ++    + +              M   GI  +  +    +++      +L   +E
Sbjct: 274 IFRVHYSTGRDVWIKVRAQVMNTLSG-GMNVIGIAMDVTEQYYLEKRYAEVDQRLSKAIE 332

Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL 519
            TS+   + ++   ++  N    +++G P   ++       + +   + +  Y T     
Sbjct: 333 CTSESFVLWDKNDRLVMCNAKYQQVYGLPDHVLIPGTKRSIINEAQINPVVEYYTSDPKR 392

Query: 520 DLRQTLEKITL---------GSTKEEKLLSLRIIIKKL--------PFSSCYSLTMHDIS 562
               + E   +           T +   +S+   I +L                T++D+S
Sbjct: 393 LQNISKEIKLVDSRWLQINEWHTPDAGTISVGTDITQLKRNQKKLRESERRLKATINDLS 452

Query: 563 ------EWKQEK-----NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
                 E ++ +      K    K+ AE  +  KS+FLA++SHE+RTPL AI+GFSE+IK
Sbjct: 453 TSRQILERQKTELSIANAKYQTEKERAEMANRAKSEFLAKMSHELRTPLNAILGFSEIIK 512

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
            + FG LG+ +Y EY   I  SG  +L+++N++L++SKIES  + ++ +  +L   ++E+
Sbjct: 513 GETFGKLGSVKYYEYVKDIHDSGKHLLNLINNILEMSKIESEHIAINKKNTNLIPIINES 572

Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
           +  +   A +K I+I  + +  +    AD R +K+I   I SN+I FT +GG++I+ T+ 
Sbjct: 573 LQSIASSAQKKNIMIEKNISPEL-FCNADERIIKKILTPIFSNSIKFTNNGGKMIVQTSR 631

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
             N+ VI+ V DTG+G+    L+K  KPF Q+ N       G+GLGL ++ A+ + + GK
Sbjct: 632 V-NDSVIITVADTGIGIPKSALKKVGKPFEQLHNQYDQNTGGSGLGLAISDALTNLHGGK 690

Query: 792 FYIFSTPAKGTLIEIIFP 809
             I S   +GT+I+I  P
Sbjct: 691 LEILSQEGEGTVIKIGMP 708


>gi|297581077|ref|ZP_06943002.1| sensor histidine kinase/response regulator [Vibrio cholerae RC385]
 gi|297534903|gb|EFH73739.1| sensor histidine kinase/response regulator [Vibrio cholerae RC385]
          Length = 927

 Score =  290 bits (743), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 84/317 (26%), Positives = 147/317 (46%), Gaps = 14/317 (4%)

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568
           ++      L + +   +        K    +++ +    +           D+ E  ++ 
Sbjct: 211 VDRIRRGHLDVRIEGKMHGELDTLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQL 270

Query: 569 N----KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
                +L  AKK A++ +  KS+FLA +SHE+RTPL  +IGF+  +   +          
Sbjct: 271 EIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTN----SQA 326

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           +Y   I++S N +L I+ND+LD SK+E+GK+ L   P    E + E ++L    A+EK +
Sbjct: 327 DYLQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGL 386

Query: 685 LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT----SNEEVIL 739
            I       IPR ++ D   ++Q+  N++ N+I FT  G  I +S           ++  
Sbjct: 387 EITLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERG-NIDVSVEMRALRDDVIDLQF 445

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            VRDTG+G++  +  +  + F Q   S   R  GTGLGL + + +V    G+  + S   
Sbjct: 446 MVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLH 505

Query: 800 KGTLIEIIFPLYDTSHP 816
           +G+       L+ T  P
Sbjct: 506 QGSTFWFTLRLHTTELP 522


>gi|229514079|ref|ZP_04403541.1| BarA sensory histidine kinase [Vibrio cholerae TMA 21]
 gi|229349260|gb|EEO14217.1| BarA sensory histidine kinase [Vibrio cholerae TMA 21]
          Length = 927

 Score =  290 bits (743), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 84/317 (26%), Positives = 147/317 (46%), Gaps = 14/317 (4%)

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568
           ++      L + +   +        K    +++ +    +           D+ E  ++ 
Sbjct: 211 VDRIRRGHLDVRIEGKMHGELDTLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQL 270

Query: 569 N----KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
                +L  AKK A++ +  KS+FLA +SHE+RTPL  +IGF+  +   +          
Sbjct: 271 EIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTN----SQA 326

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           +Y   I++S N +L I+ND+LD SK+E+GK+ L   P    E + E ++L    A+EK +
Sbjct: 327 DYLQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGL 386

Query: 685 LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT----SNEEVIL 739
            I       IPR ++ D   ++Q+  N++ N+I FT  G  I +S           ++  
Sbjct: 387 EITLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERG-NIDVSVEMRALRDDVIDLQF 445

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            VRDTG+G++  +  +  + F Q   S   R  GTGLGL + + +V    G+  + S   
Sbjct: 446 MVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLH 505

Query: 800 KGTLIEIIFPLYDTSHP 816
           +G+       L+ T  P
Sbjct: 506 QGSTFWFTLRLHTTELP 522


>gi|229527059|ref|ZP_04416454.1| BarA sensory histidine kinase [Vibrio cholerae 12129(1)]
 gi|229335456|gb|EEO00938.1| BarA sensory histidine kinase [Vibrio cholerae 12129(1)]
          Length = 927

 Score =  290 bits (743), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 84/317 (26%), Positives = 147/317 (46%), Gaps = 14/317 (4%)

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568
           ++      L + +   +        K    +++ +    +           D+ E  ++ 
Sbjct: 211 VDRIRRGHLDVRIEGKMHGELDTLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQL 270

Query: 569 N----KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
                +L  AKK A++ +  KS+FLA +SHE+RTPL  +IGF+  +   +          
Sbjct: 271 EIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTN----SQA 326

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           +Y   I++S N +L I+ND+LD SK+E+GK+ L   P    E + E ++L    A+EK +
Sbjct: 327 DYLQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGL 386

Query: 685 LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT----SNEEVIL 739
            I       IPR ++ D   ++Q+  N++ N+I FT  G  I +S           ++  
Sbjct: 387 EITLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERG-NIDVSVEMRALRDDVIDLQF 445

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            VRDTG+G++  +  +  + F Q   S   R  GTGLGL + + +V    G+  + S   
Sbjct: 446 MVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLH 505

Query: 800 KGTLIEIIFPLYDTSHP 816
           +G+       L+ T  P
Sbjct: 506 QGSTFWFTLRLHTTELP 522


>gi|254291653|ref|ZP_04962441.1| sensor histidine kinase/response regulator [Vibrio cholerae
           AM-19226]
 gi|150422425|gb|EDN14384.1| sensor histidine kinase/response regulator [Vibrio cholerae
           AM-19226]
          Length = 927

 Score =  290 bits (743), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 84/317 (26%), Positives = 147/317 (46%), Gaps = 14/317 (4%)

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568
           ++      L + +   +        K    +++ +    +           D+ E  ++ 
Sbjct: 211 VDRIRRGHLDVRIEGKMHGELDTLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQL 270

Query: 569 N----KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
                +L  AKK A++ +  KS+FLA +SHE+RTPL  +IGF+  +   +          
Sbjct: 271 EIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTN----SQA 326

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           +Y   I++S N +L I+ND+LD SK+E+GK+ L   P    E + E ++L    A+EK +
Sbjct: 327 DYLQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGL 386

Query: 685 LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT----SNEEVIL 739
            I       IPR ++ D   ++Q+  N++ N+I FT  G  I +S           ++  
Sbjct: 387 EITLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERG-NIDVSVEMRALRDDVIDLQF 445

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            VRDTG+G++  +  +  + F Q   S   R  GTGLGL + + +V    G+  + S   
Sbjct: 446 MVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLH 505

Query: 800 KGTLIEIIFPLYDTSHP 816
           +G+       L+ T  P
Sbjct: 506 QGSTFWFTLRLHTTELP 522


>gi|121728971|ref|ZP_01681975.1| sensor histidine kinase/response regulator [Vibrio cholerae V52]
 gi|147673482|ref|YP_001217955.1| hybrid sensory histidine kinase BarA [Vibrio cholerae O395]
 gi|153826897|ref|ZP_01979564.1| sensor histidine kinase/response regulator [Vibrio cholerae MZO-2]
 gi|121628737|gb|EAX61204.1| sensor histidine kinase/response regulator [Vibrio cholerae V52]
 gi|146315365|gb|ABQ19904.1| sensor histidine kinase/response regulator [Vibrio cholerae O395]
 gi|149739260|gb|EDM53522.1| sensor histidine kinase/response regulator [Vibrio cholerae MZO-2]
 gi|227014345|gb|ACP10555.1| sensor histidine kinase/response regulator [Vibrio cholerae O395]
          Length = 927

 Score =  290 bits (743), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 84/317 (26%), Positives = 147/317 (46%), Gaps = 14/317 (4%)

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568
           ++      L + +   +        K    +++ +    +           D+ E  ++ 
Sbjct: 211 VDRIRRGHLDVRIEGKMHGELDTLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQL 270

Query: 569 N----KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
                +L  AKK A++ +  KS+FLA +SHE+RTPL  +IGF+  +   +          
Sbjct: 271 EIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTN----SQA 326

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           +Y   I++S N +L I+ND+LD SK+E+GK+ L   P    E + E ++L    A+EK +
Sbjct: 327 DYLQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGL 386

Query: 685 LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT----SNEEVIL 739
            I       IPR ++ D   ++Q+  N++ N+I FT  G  I +S           ++  
Sbjct: 387 EITLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERG-NIDVSVEMRALRDDVIDLQF 445

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            VRDTG+G++  +  +  + F Q   S   R  GTGLGL + + +V    G+  + S   
Sbjct: 446 MVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLH 505

Query: 800 KGTLIEIIFPLYDTSHP 816
           +G+       L+ T  P
Sbjct: 506 QGSTFWFTLRLHTTELP 522


>gi|94265011|ref|ZP_01288780.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93454500|gb|EAT04785.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 581

 Score =  290 bits (743), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 91/322 (28%), Positives = 155/322 (48%), Gaps = 8/322 (2%)

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556
              FL       +        +    Q   +I +   +  +L+       ++        
Sbjct: 109 LLAFLRHGVAYALEEEKRREEAAQDEQYRHQIEVLKKQHGELIEDNYRQYRINQQQQEEY 168

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
           T +  SE  ++  +L  A    E+ S  KS+FLA +SHE+RTP+ AI GF+E++      
Sbjct: 169 TRNLESEIARQTAELRQANARLEESSRLKSEFLANMSHELRTPMNAITGFAELLAETPL- 227

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
              N    EY   I ++   +L+++ND+LD++KIE+GK++L   P SLDE +    ++  
Sbjct: 228 ---NQEQDEYCRTIRQAAAALLNLINDILDLAKIEAGKLDLEAVPFSLDELLEGVRAMFT 284

Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSN 734
           L A +K I I       +P  +  D   ++Q+ +N+L NAI FT  GG ++ ++   T+ 
Sbjct: 285 LAARKKGIEITIKRGEGLPDTLRGDSHRLRQVLINLLGNAIKFTEQGGVELEVAAGSTAA 344

Query: 735 EEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
           ++V     VRD+G+G++ + LE   + F Q   S   R  GTGLGL + + +V+   G+ 
Sbjct: 345 DKVRLFFAVRDSGMGISPHRLEAIFEKFTQADGSTTRRFGGTGLGLAICRQLVELMGGQI 404

Query: 793 YIFSTPAKGTLIEIIFPLYDTS 814
            + S   KG+       L   S
Sbjct: 405 EVSSQQGKGSTFSFEIELERES 426


>gi|288958053|ref|YP_003448394.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
 gi|288910361|dbj|BAI71850.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
          Length = 843

 Score =  290 bits (743), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 95/659 (14%), Positives = 210/659 (31%), Gaps = 60/659 (9%)

Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS 242
           I     +      +G  L      +   +     +E+  +   + +      R +  + S
Sbjct: 67  IGRSIVMVRRSARVGALLGGALEGMPAGQLLCDGMEEVVFINAAFRELAGWRRGERPLDS 126

Query: 243 LTEYYAHKDDVLK--TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN-NSKES 299
           L   +A   D  +        + +  ++  E             +K     +        
Sbjct: 127 LARQFAGDPDSAREFRRLRERVKAGAAASAELAIPALDGQPPEWRKVQGQPVGGFPGSVH 186

Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVD 358
           +          L       +    + ++  P+ FF V  +G   + N +     +    D
Sbjct: 187 WRVEDITARRELEHVMLREQAKLADFMEHAPVGFFSVDQNGQFLFVNATLAQWLEALPGD 246

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
             +        L     +      P  L+            +  ++              
Sbjct: 247 LTDG----DARLHGILAAPPLTAAPYDLFDHGGGEQRGELTMVGLR--GRRFQVAVAQSV 300

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
             A+     +    +  +    R  +  + +   +     E    GIA+++  G +   N
Sbjct: 301 VHADDG--TIHTRSVVRDLSPEREWQEALRLSEQRFQRFFEDAPIGIALVDETGQLTECN 358

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
            A   L G     ++ +P    +      V+   L  +                    + 
Sbjct: 359 EAFLALIGSEAGSVIDRPMAELIVPAEREVVTTRLKSVQGGADPA---HPLEVRLSGGRE 415

Query: 539 LSLRIIIKKL--------------PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
           L+ ++  ++L                     L   D++E K  + + + ++K+       
Sbjct: 416 LTAQLYARRLANPVRTDGRMEMGRGDGVGLILHFIDMTERKSLEAQFAQSQKM-----QA 470

Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
                  V+H+    LTA+IGF +++  +     G+  + +    I ++ N   ++V  L
Sbjct: 471 VGQLAGGVAHDFNNLLTAMIGFCDLLLLRH--KPGDQSFSDIMQ-IKQNANRAANLVRQL 527

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704
           L  S+    +  L    +++ + ++E  +L++     + I ++      +  +  D   +
Sbjct: 528 LAFSR----QQTLQPRVINVTDVLAELANLLRRLI-GENIELKMIHGRELGLVKVDQNQL 582

Query: 705 KQIALNILSNAIHFTPSGGQIIISTT--------------HTSNEEVILRVRDTGVGMTN 750
           +Q+ +N++ NA      GG++ I+TT                    V + V DTG G+  
Sbjct: 583 EQVIINLVVNARDAMAGGGKLTINTTNHVVSEPERREHETVPPGGYVSIDVIDTGCGIAR 642

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             L++  +PF          G GTGLGL     +V    G   + S   +GT   I+ P
Sbjct: 643 ENLQRIFEPFYTTK----EVGSGTGLGLSTVYGIVRQTGGFVLVDSAVGEGTTFTILLP 697



 Score = 41.2 bits (95), Expect = 0.74,   Method: Composition-based stats.
 Identities = 29/320 (9%), Positives = 75/320 (23%), Gaps = 22/320 (6%)

Query: 82  TVRFTWNIDAHGYLKEIS----EELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL 137
            V F +++D +G    ++    + L    G+       +     +  L   P +      
Sbjct: 217 PVGF-FSVDQNGQFLFVNATLAQWLEALPGDLTDGDARLHGILAAPPLTAAPYDLFD--- 272

Query: 138 KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG 197
                  G+ T+  + G    V +  +   +++ +          +V     + + +   
Sbjct: 273 HGGGEQRGELTMVGLRGRRFQVAVAQSV--VHADDGTIHTRS---VVRDLSPEREWQEAL 327

Query: 198 KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL---RMKNKVSSLTEYYAHKDDVL 254
           +  +++F    E      ++  E   +         L      + +           +  
Sbjct: 328 RLSEQRFQRFFEDAPIGIALVDETGQLTECNEAFLALIGSEAGSVIDRPMAELIVPAERE 387

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
                       +      +       + T + Y   L N  +        R        
Sbjct: 388 VVTTRLKSVQGGADPAHPLEVRLSGGRELTAQLYARRLANPVRTDGRMEMGRGDGVGLIL 447

Query: 315 F---DEGENLTPETVDKCP--IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
                           +          + G     N     +  +  +  +    G    
Sbjct: 448 HFIDMTERKSLEAQFAQSQKMQAVGQLAGGVAHDFNNLLTAMIGFCDLLLLRHKPG-DQS 506

Query: 370 LDAPKLSDNNAIKPVMLYRS 389
                    NA +   L R 
Sbjct: 507 FSDIMQIKQNANRAANLVRQ 526


>gi|229551747|ref|ZP_04440472.1| sensor histidine kinase [Lactobacillus rhamnosus LMS2-1]
 gi|258539146|ref|YP_003173645.1| two component sensor transduction histidine kinase [Lactobacillus
           rhamnosus Lc 705]
 gi|229314878|gb|EEN80851.1| sensor histidine kinase [Lactobacillus rhamnosus LMS2-1]
 gi|257150822|emb|CAR89794.1| Two component sensor transduction histidine kinase [Lactobacillus
           rhamnosus Lc 705]
          Length = 555

 Score =  290 bits (743), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 82/431 (19%), Positives = 174/431 (40%), Gaps = 33/431 (7%)

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             +     +   A     H +   R+       I   ++   P     N +  E    R 
Sbjct: 150 AWLFRSEHQYQEAIRVMSHNLDRIRQKKEPEPVILPPQSPFTPVARRINALAAEQTHLRE 209

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
                +    +L   ++    G+ +I+    ++  N A+S+L G+     + +P   +L+
Sbjct: 210 KVAVRQSSFDRL---IDNLPLGVMLIDTNKDVILHNHAMSQLLGHQ----IPQPRHNYLD 262

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTK--EEKLLSLRIIIKKLPFSSCYSLTMHD 560
                 +   +      +     E   L + K  +  ++ L     +L       + ++D
Sbjct: 263 DVKTYALARMIEHTFRHEKTHHQELTVLATQKSVDASVIPLNQGTSRLQ----VLVILYD 318

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           ++  +Q +                + DF+  VSHE++TP+TAI GF+E + +        
Sbjct: 319 VTYLRQVE--------------KMQLDFVGNVSHELKTPVTAISGFAETLLSG--AKNDP 362

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
               ++   I      +  ++ND+L +S+ ES +       V L + V +A+  +     
Sbjct: 363 ATLDKFLKIIFDESKRLTQLINDILTLSRPESNQTV--QAQVPLKKLVDDALRNLAKVIK 420

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
           +K+I +  + A ++ +++ D R + QI  N+L+NA+ +    G + I+        + L 
Sbjct: 421 DKQIRVEVAIAPDL-QVVTDERKLTQIVRNLLNNAVFYNRLAGHVTITAQVVE-GHLSLA 478

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V DTG+G+   E  +  + F ++  ++     GTGLGL +   +V +  G+  + S    
Sbjct: 479 VADTGIGIPETEQARIFERFYRVDKARSRHNGGTGLGLAIVSELVKSMDGQVAVSSQVGV 538

Query: 801 GTLIEIIFPLY 811
           G+   +  P+ 
Sbjct: 539 GSTFTVTLPVS 549


>gi|193084071|gb|ACF09741.1| two-component system sensory histidine kinase [uncultured marine
           group III euryarchaeote AD1000-40-D7]
          Length = 441

 Score =  290 bits (743), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 85/243 (34%), Positives = 132/243 (54%), Gaps = 5/243 (2%)

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
            +L   ++ A+  S  KSDFLA +SHE+RTPL AIIG+SE++  +     G   Y +  +
Sbjct: 197 EELKILREQAQNASKAKSDFLANMSHELRTPLNAIIGYSEMLMEEAEDD-GLDTYSDDLS 255

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I+ SG  +L ++ND+LD+SKIE+GKM LH E   L++ +S+  +  +    +       
Sbjct: 256 KINSSGEHLLTLINDILDLSKIEAGKMELHIEVFELEKHLSQIEATAKPLVEKNGNKFVI 315

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-VILRVRDTGVG 747
              +NI ++  D   ++QI  N+LSNA  FT  G    ++   T + + +   V DTG+G
Sbjct: 316 EKPDNIKKLTNDQTKLRQILFNMLSNAAKFTKKG---TVTLAITKSGDDIKFAVVDTGIG 372

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           M   +L K  + F Q  +S      GTGLGLP++K M +   G+  + S   KGT   I 
Sbjct: 373 MNEGQLGKVFEEFTQAESSTSKDYGGTGLGLPISKMMTEMMGGRMDVESEEGKGTTFSIT 432

Query: 808 FPL 810
            P+
Sbjct: 433 IPI 435


>gi|237748972|ref|ZP_04579452.1| two-component sensor histidine kinase [Oxalobacter formigenes
           OXCC13]
 gi|229380334|gb|EEO30425.1| two-component sensor histidine kinase [Oxalobacter formigenes
           OXCC13]
          Length = 877

 Score =  290 bits (743), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 94/384 (24%), Positives = 162/384 (42%), Gaps = 27/384 (7%)

Query: 443 NKRKMEIEVMQ------LCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRK 495
            +R       +      L  I E   +   + N R G++   +    ++ G    D+ + 
Sbjct: 211 QRRAARNFRERQFHDNILRIIAENVENVFILFNSRSGMVEYVSHNAKRILGIDYRDLRQT 270

Query: 496 P--FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK-EEKLLSLRIIIKKLPF-- 550
           P   +        + ++  L       L++ +            K+  +   +  +    
Sbjct: 271 PQQLSDLCVSEDANPVSEMLGV---HSLKEPVTHEVRLKNPISGKVCWMLASLYPVREKA 327

Query: 551 ---SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
                 Y L + D++E ++ +  L  A   A+  ++ KS FL+R+SHEIRTP+ AIIG +
Sbjct: 328 DDFGDRYILVISDLTEIRKTQEVLKDALVNAQNANNAKSTFLSRMSHEIRTPMNAIIGMT 387

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
             I           +     + I  S   ++ ++ND+LD+SKIESGK+ L +EP  L + 
Sbjct: 388 A-IATTALN--DRSKIENCLSKIAFSSRHLMMLINDVLDMSKIESGKLTLTYEPFELSDL 444

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727
           +S   S++   A  K+     +   +   +  D+    QI +NILSNA+ FTP  G I +
Sbjct: 445 ISNIGSIIYPQAAFKKQEFEINVNVSHECLTGDVLRTNQILINILSNAVKFTPEKGHIRL 504

Query: 728 ST-----THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
                     S   +   + D G GM+   +EK   PF Q         EGTGLG+P+  
Sbjct: 505 RIEEMKKRFDSRVWLRFTISDDGCGMSAEFIEKIFTPFEQ-ETRTTRLVEGTGLGMPITG 563

Query: 783 AMVDANMGKFYIFSTPAKGTLIEI 806
            +V    G   + S   KG++  +
Sbjct: 564 NLVTLMDGAINVQSEVDKGSIFTV 587


>gi|222054816|ref|YP_002537178.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Geobacter sp. FRC-32]
 gi|221564105|gb|ACM20077.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Geobacter sp. FRC-32]
          Length = 361

 Score =  290 bits (743), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 77/378 (20%), Positives = 160/378 (42%), Gaps = 36/378 (9%)

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
           E       +++++  DG+ +++ +G++   N A  ++ G  +    +  F+   +     
Sbjct: 4   EHLEEYYANVIDSVGDGVIVLDIQGLVTLLNPAAEEMVGISLRQARKAHFSDLFKGE--E 61

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL----PFSSCYSLTMHDISE 563
           ++   + +     +    +   +   K  +L+ +      L           L + D++ 
Sbjct: 62  ILLDMVHKTAQTGMT-ISDHENIILKKVGRLIPVSATTSPLMKADGDRIGTILILRDLTN 120

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            ++ ++ +  A ++     S      A ++HEI+ PL  I G +++++ +      NP  
Sbjct: 121 IRELEDAVRQADRL-----SSLGALAAGLAHEIKNPLGGIKGAAQLLEMEL---PDNPEL 172

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            +Y   + +    V  IV DLL ++        L    V+L + + + + L +   + +R
Sbjct: 173 RDYTRVMLKEVQRVNRIVEDLLALA----SPRKLELSKVNLHKVLGDILLLQKRAVDGRR 228

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE------- 736
           I     F  +IP ILAD   + Q+ LN++ NA+     GGQ+ + +   S+         
Sbjct: 229 ITFIQQFDPSIPPILADESLLTQLFLNLIKNAVEAVGDGGQVKVKSRILSDYSMMPKGEG 288

Query: 737 ----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
               V + V D G G+   EL+    PF    +      +GTGLGL + + ++  + G  
Sbjct: 289 RSRLVAIDVCDDGPGIDKEELDHLFTPFYTTKS------KGTGLGLAICQKIIAEHRGMI 342

Query: 793 YIFSTPAKGTLIEIIFPL 810
            + S P KGT   ++ PL
Sbjct: 343 RVDSEPGKGTAFTVMLPL 360



 Score = 40.0 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 24/259 (9%), Positives = 65/259 (25%), Gaps = 10/259 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG-KT 147
           +D  G +  ++    + +G    +       D+     I  +       +   T    + 
Sbjct: 24  LDIQGLVTLLNPAAEEMVGISLRQARKAHFSDLFKGEEILLDMVHKTA-QTGMTISDHEN 82

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
            +    G    +P+     P+   + +  G     I+       +     ++ D+  S  
Sbjct: 83  IILKKVGRL--IPVSATTSPLMKADGDRIGT--ILILRDLTNIRELEDAVRQADRLSSLG 138

Query: 208 HEIKKGHSSVEKEKYDIFSQQSP----PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
                    ++     I           P        + +      + + +  +   L +
Sbjct: 139 ALAAGLAHEIKNPLGGIKGAAQLLEMELPDNPELRDYTRVMLKEVQRVNRIVEDLLALAS 198

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
             +  L +      +      +K+     +    + F+          S       NL  
Sbjct: 199 PRKLELSKVNLHKVLGDILLLQKRAVDGRRITFIQQFDPSIPPILADESLLTQLFLNLIK 258

Query: 324 ETVDKCPIPFFVYSHGNLF 342
             V+       V     + 
Sbjct: 259 NAVEAVGDGGQVKVKSRIL 277


>gi|28901084|ref|NP_800739.1| hypothetical protein VPA1229 [Vibrio parahaemolyticus RIMD 2210633]
 gi|28809597|dbj|BAC62572.1| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633]
          Length = 882

 Score =  290 bits (743), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 83/266 (31%), Positives = 136/266 (51%), Gaps = 16/266 (6%)

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
               + E +++ +++ HAK+ A   +  KS FLA +SHEIRTPL  I+G +E++      
Sbjct: 355 VNRVVEEKQRQTHEILHAKESAVAANRAKSVFLANMSHEIRTPLNGIMGMTEILSQSELS 414

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
           P       E  + ID S + +L ++ND+LD+SKIESG++ L      + E V +++ L Q
Sbjct: 415 P----HQQEVVDDIDTSSHTLLALLNDILDLSKIESGRLELSLVEADIREVVYQSVILFQ 470

Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS-- 733
             A  K++ +  S   NIP R++ D   +KQI  N++SNA+ FT  G  I++  ++    
Sbjct: 471 SKATSKQLELDISLDENIPARVMVDDHRIKQIITNLVSNAVKFTEQG-YILVDVSYEEAL 529

Query: 734 ---NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
                 +   ++D+G+G+   +L    +PF Q       +  GTGLGL + + +V    G
Sbjct: 530 EQGRGSLTFLIKDSGIGIERDKLATIFEPFTQEDEGVSRQFGGTGLGLAICRQLVSMMGG 589

Query: 791 KFYIFSTPAKGTLIEII-----FPLY 811
           K    ST   GT           PL+
Sbjct: 590 KLVATSTKGVGTCFGFSIEVEALPLF 615


>gi|83814249|ref|YP_446168.1| sensory box sensor histidine kianse/response regulator
           [Salinibacter ruber DSM 13855]
 gi|83755643|gb|ABC43756.1| sensory box sensor histidine kianse/response regulator
           [Salinibacter ruber DSM 13855]
          Length = 905

 Score =  290 bits (743), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 103/744 (13%), Positives = 230/744 (30%), Gaps = 83/744 (11%)

Query: 116 MRLCDVSDILHIDPNNHIGDLLKRQNTWYG-KTTLWPIEGTNLYVPIDLAALPIYSRNRE 174
               +V      +        L+ + +  G    L   +G    V  ++   P  ++N  
Sbjct: 55  RTFFEVFADPDDEWRTAFLRSLEEKGSRRGYGQRLSQPDGPTYQVDWEV--RPWQTKNGS 112

Query: 175 FSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP-- 232
             G     I      +   + L +++D +F  L         +  +              
Sbjct: 113 ERGVLLSVI--DRTEERHAKGLRRQVDHRFDKLVGTISEGVLLMDDTGVFRDGNEAAQNI 170

Query: 233 ---------HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY 283
                      R  + + +           ++   +      E    E    +  +    
Sbjct: 171 LGRSLDEIIGSRFDDDIWNGLREDGSPLPNVEFPFWRAYVEREPVQEEVMGVYPPDAPPR 230

Query: 284 TKKQYFGTLQNNSKESF-----EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS- 337
             +     L  + +E+       +    +            +L    +        V+S 
Sbjct: 231 WIRVNAQPLFRSGQEAPYAVLVSFDDITDERLKEEALQTSRDLLSSVLSSSLDGIIVFSA 290

Query: 338 ----HGNL-----FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388
                  +        NP    L +  + D +    G+    D P+  +    +      
Sbjct: 291 IRSAGDTIADFECVLVNPQAEKLFESTAEDIV----GMRLREDMPRQEEKGLFEAYREVV 346

Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
                        T        +    +  +  N             +  D +  +R++ 
Sbjct: 347 ETGEPAEMEVHYDT----DGQDVWFQVMAVKVENG------VAVTYRDITDRKEAERQIR 396

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
            +      +L+   D I   + +G I+  N++  +L G+  E++L       L       
Sbjct: 397 EQAQ----LLDKARDAILAHDLDGRIVYWNKSAERLTGWSKEEVLGAQAHDCLYAPNEEG 452

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQ 566
                 E +  +   T E        EE+++  R  + +          +   DI+E K+
Sbjct: 453 TLQQCHETMMAEGEWTGELHMRTKDDEERIVESRWSLVRDSTGEPKHVLVINTDITERKR 512

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
            +++   ++++           +  ++H++   L  I    +V+K +      + +  + 
Sbjct: 513 LESQFLRSQRM-----ESLGRLVGGIAHDLGNLLVPITLGVKVLKRRVDDT--DDKVDQT 565

Query: 627 ANYIDRSGNLVLDIVNDLLDISK-IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
            + I +S     D+V  +L  ++ +E  ++ L        E + E +  +      + + 
Sbjct: 566 LSMIQKSAERGSDMVEQVLAFARGVEGERVALQP------ELIVEEVEEMTTETFPEDVE 619

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT--------------H 731
           +      ++  ++ D   ++Q+ +N+  NA    P GG + +                  
Sbjct: 620 VHIRTDADLRPVVGDATQIQQVLMNLCVNARDAMPDGGTLTVEARNVDFTEREARRNIEA 679

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
                V + VRDTG GM +   +K  +PF          GEGTGLGL  A +++ ++ G 
Sbjct: 680 EPGGYVCIEVRDTGTGMPDDVADKIFEPFFTTK----EEGEGTGLGLSTAYSIIQSHDGF 735

Query: 792 FYIFSTPAKGTLIEIIFPLYDTSH 815
             + S    GT   I  P  D   
Sbjct: 736 MDVESEEGVGTTFWIYLPAADEEA 759



 Score = 81.2 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 38/378 (10%), Positives = 96/378 (25%), Gaps = 20/378 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRL-CDVSDILHIDPNN------HIGDLLKRQN 141
           +D  G  ++ +E     +G    ++IG R   D+ + L  D +               + 
Sbjct: 154 MDDTGVFRDGNEAAQNILGRSLDEIIGSRFDDDIWNGLREDGSPLPNVEFPFWRAYVERE 213

Query: 142 TWYGKTT-LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
               +   ++P +    ++ ++   L    +   ++    F  +   R+  +     + L
Sbjct: 214 PVQEEVMGVYPPDAPPRWIRVNAQPLFRSGQEAPYAVLVSFDDITDERLKEEALQTSRDL 273

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV-SSLTEYYAHKDDVLKTEKY 259
                          S  +   D  +            K+  S  E            + 
Sbjct: 274 LSSVLSSSLDGIIVFSAIRSAGDTIADFECVLVNPQAEKLFESTAEDIVGMRLREDMPRQ 333

Query: 260 PLLTSEESSLPEQEDFHTINLN--QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
                 E+     E      +     T  Q         K            +     + 
Sbjct: 334 EEKGLFEAYREVVETGEPAEMEVHYDTDGQDVWFQVMAVKVENGVAVTYRDITDRKEAER 393

Query: 318 GENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
                 + +DK       +   G + Y N S   LT +   + +  A     L      +
Sbjct: 394 QIREQAQLLDKARDAILAHDLDGRIVYWNKSAERLTGWSKEEVL-GAQAHDCLYAP---N 449

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           +   ++                 +   +   +    +        +   E      I  +
Sbjct: 450 EEGTLQQCHETMMAEGEWTGELHM---RTKDDEERIVESRWSLVRDSTGEPKHVLVINTD 506

Query: 437 DVDTRINKRK-MEIEVMQ 453
             + +  + + +  + M+
Sbjct: 507 ITERKRLESQFLRSQRME 524



 Score = 44.6 bits (104), Expect = 0.062,   Method: Composition-based stats.
 Identities = 11/117 (9%), Positives = 33/117 (28%), Gaps = 5/117 (4%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN-HIGDLLKRQNTWYGKTT 148
           D  G +   ++   +  G    +++G +  D     + +       + +  +  W G+  
Sbjct: 413 DLDGRIVYWNKSAERLTGWSKEEVLGAQAHDCLYAPNEEGTLQQCHETMMAEGEWTGELH 472

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +   +  +    ++     +     E        I           +   R  +  S
Sbjct: 473 MRTKD--DEERIVESRWSLVRDSTGEPKHV--LVINTDITERKRLESQFLRSQRMES 525


>gi|262196613|ref|YP_003267822.1| MCP methyltransferase, CheR-type with PAS/PAC sensor [Haliangium
            ochraceum DSM 14365]
 gi|262079960|gb|ACY15929.1| MCP methyltransferase, CheR-type with PAS/PAC sensor [Haliangium
            ochraceum DSM 14365]
          Length = 2031

 Score =  290 bits (743), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 119/789 (15%), Positives = 237/789 (30%), Gaps = 60/789 (7%)

Query: 56   DQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIG 115
               Q  V+      S+     +  P  +      D  G++  +S+ L  + G     +  
Sbjct: 1122 SAKQRVVAPLRENSSQLFAALERAPVPLTVV---DEDGHILLMSDALFDSHGYARDDIED 1178

Query: 116  -MRLC-DVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNR 173
                   +S +        +    +        T        +  V    +A    S   
Sbjct: 1179 VESWMLQISTLDSEHYGKMLAAQFEHDGPSLDGTFRVRTRYGDTLVWATHSAPIGTSETG 1238

Query: 174  EFSGFRGFGIV-----HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228
                   +  +               AL     K+ S    +       +          
Sbjct: 1239 RRMRLSMWREIAEEEPQPTFATGATGALSDASLKEASGSAPVLLWTFLADNMDRWFHRTW 1298

Query: 229  SPPPHLRMKNKVSSLTEYYAHKDD-VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287
                  R ++  S+      H DD     E +     E      +        +      
Sbjct: 1299 RDFSGRRFRDGESTSWTEGVHPDDVERCIESFSSAFDEARGFELEYRVRRQGGSYRWVLD 1358

Query: 288  YFGTLQNNSKESFEYLSHRNHPSLS----AYFDEGENLTPETVDKCPIPFFVYSHGN--L 341
                  +       ++      +      A   E +       D  P    VY   +  L
Sbjct: 1359 RGTPRFDEGGALVGFVGSCIDITEHREAVAAVAESQRWLERIADASPDALAVYDTDDKYL 1418

Query: 342  FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401
             Y N     +  Y  ++D+        LL      D   +K + +        A      
Sbjct: 1419 LYGNIQLTQVLAY-PLEDLRALPPAG-LLGYVHAQDEAELKKLFVTLESARPGAMHQHSL 1476

Query: 402  TIQWNRENSLAMTFIPFE-KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
             ++        +         +          +  +  + +  ++ +    M+    +  
Sbjct: 1477 RVRHADGGYRWLDIRVVPFAWSDLGRVYQWLVVAHDITEFKRTQQALRESDMRFRQAVID 1536

Query: 461  TSDGIAIINREGIILSTNRAVSKLFGYPVEDILR-KPFTVFLEQNTPSVMNHYLTEILSL 519
                I +   +  IL+T+ A  +  GY  +++     +      +    +   +      
Sbjct: 1537 APLPIMLYTDDDEILATSGAWLEATGYSGDEMGSVSDWLRLAFGDAADAVRARIARAFEA 1596

Query: 520  DLRQTLEKITLGSTKEEK----LLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575
              +Q + +      ++      L ++    K     S +     D++E +  +  L    
Sbjct: 1597 G-QQMVSREMTVRMRDGSMRQWLFNVSAPQKLPDGRSYFIEVAVDVTELRAAQRALED-- 1653

Query: 576  KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
                  +  K DFLA + H++R PL A+   +E ++          R       +DR G 
Sbjct: 1654 -----SARQKDDFLAMLGHKLRNPLAAVRHATEFLQ---LKSPDPQRMARLTAVLDRQGA 1705

Query: 636  LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695
             +  +++ LLD++ +  G + L  EP+ L E +   +   +   + K++ +R   A+   
Sbjct: 1706 QMARLIDGLLDVTSMVRGTLRLRREPLDLVEVLGSVVEAHRPSIDAKKLKLRVESAHGPL 1765

Query: 696  RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755
             +L D   + Q+  N+LSNAI FTP  G I +   H   E V L V DTGVG+       
Sbjct: 1766 WMLGDRIRLVQVFDNLLSNAIKFTPPPGDIAVMLAHIDAEHVELSVSDTGVGIAPAVQAC 1825

Query: 756  AMKPFGQIPNSQQIR-----------GEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTL 803
              +PF Q   + +             G             V+ + G+  + S  P  GT+
Sbjct: 1826 IFEPFQQATVTVERAGGLGLGLSLAKGL------------VELHGGEIGVSSRGPNPGTV 1873

Query: 804  IEIIFPLYD 812
              +  PL  
Sbjct: 1874 FTVRLPLSP 1882



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 46/531 (8%), Positives = 114/531 (21%), Gaps = 71/531 (13%)

Query: 79   IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK 138
                V   + +D    ++  +    + +   A    G  + D+   +       +   + 
Sbjct: 714  RRAPVAVVF-LDMQLRIRHFTAAAAELLHVRAVD-EGRSIGDIKLRIPGVELLQVAREVL 771

Query: 139  RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFR-GFGIVHVNRVDNDPRALG 197
            +       T                 A P ++ + +  G    F  V             
Sbjct: 772  KSGASRSLTLARTTLEDGSERRYAFDASPYFNLDGDLDGVTLRFDDVTERDAQAMRAKHL 831

Query: 198  KRLDKKFSHLHEIKKGHSSVE--------------------------------------- 218
             R       L E+ +   S++                                       
Sbjct: 832  ARQQAALVRLGEVARVAESMDAIWGEALAAVRECLGTRYVAFFELRGPALVRGPSVGWDD 891

Query: 219  --KEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFH 276
               E  +       P    ++   + +                P   +            
Sbjct: 892  GGDEDAEPVYVDISPGDAVLREDAACMVADLRRDTRTAVRALAPSDRATSGLSCALPTML 951

Query: 277  TINLNQYT-------KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL-------- 321
              +            +  +F     +      +L       L+A  +E E          
Sbjct: 952  RADSGSRRLLCAHTVEMHHFTAEDGDFLRLVAHLLSALEARLAARQEERERADAVAALSG 1011

Query: 322  -TPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
                      +    +   G     N +   +    +   +  +           L+ + 
Sbjct: 1012 ELQAMYGSQALALGRFDHQGRYCRVNAALASMHGVAADALVGRSAAALEDPLGRALTPHV 1071

Query: 380  AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
            +        +          L  +    E                   +  + +  +   
Sbjct: 1072 SGVLAGGEAARG--------LRILAGEGEAQRVWRVDCAPVLGAGGAVVGVSVMALDVSA 1123

Query: 440  TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR-KPFT 498
             +     +     QL + LE     + +++ +G IL  + A+    GY  +DI   + + 
Sbjct: 1124 KQRVVAPLRENSSQLFAALERAPVPLTVVDEDGHILLMSDALFDSHGYARDDIEDVESWM 1183

Query: 499  VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
            + +           L      D    L+      T+    L        + 
Sbjct: 1184 LQISTLDSEHYGKMLAAQFEHDGPS-LDGTFRVRTRYGDTLVWATHSAPIG 1233



 Score = 54.6 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 43/407 (10%), Positives = 102/407 (25%), Gaps = 18/407 (4%)

Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254
             G    +  S            E E      +    P LR  ++ ++L      +  ++
Sbjct: 452 EAGLYRVRPLSAGRGGDGAAEPSEGEDAVTTGRSVALPALRSMHQRAALERSG-CRSVLV 510

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
                 L          +  +   +             ++  + + E    R      A 
Sbjct: 511 DEHLSVLDVCGRLGDYLELAWSGAD------SDILALARSEVRPALEDALRRARADNRAV 564

Query: 315 FDEGENLTPETVDKCPIPFFVYSHGNLFYANPSF---LLLTKYKSVDDIEIAGGLSTLLD 371
                  + +  D+ P    V        A   +                 AGG +    
Sbjct: 565 TIPNLTRSGKGGDR-PYDLLVEPWTRAGVATGMWWIGFREYAPTPPRSAGGAGGEAPEDP 623

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAA--SARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
                       ++  +     +AA    RL   +    ++  +  +  E          
Sbjct: 624 ERARLAAQLQAAMVQVQRAGEALAAYDEERLQARRALSSSATKLRRLRAELQEAEERQQV 683

Query: 430 QNGIEPEDVDTRINKR-KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
                    +  + K  ++E  +    ++L      +  ++ +  I     A ++L    
Sbjct: 684 LGEELQAYYEDAVAKGVELERALADRANLLRRAPVAVVFLDMQLRIRHFTAAAAELLHVR 743

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
             D  R    + L      ++      + S   R      T      E+  +        
Sbjct: 744 AVDEGRSIGDIKLRIPGVELLQVAREVLKSGASRSLTLARTTLEDGSERRYAFDASPYFN 803

Query: 549 PFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
                   +L   D++E       +       ++ +  +   +ARV+
Sbjct: 804 LDGDLDGVTLRFDDVTERDA--QAMRAKHLARQQAALVRLGEVARVA 848


>gi|19115322|ref|NP_594410.1| histidine kinase Mak2 [Schizosaccharomyces pombe 972h-]
 gi|74581940|sp|O14002|MAK2_SCHPO RecName: Full=Peroxide stress-activated histidine kinase mak2;
            AltName: Full=His-Asp phosphorelay kinase phk1; AltName:
            Full=Mcs4-associated kinase 2
 gi|2388949|emb|CAB11683.1| histidine kinase Mak2 [Schizosaccharomyces pombe]
          Length = 2310

 Score =  290 bits (743), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 83/469 (17%), Positives = 177/469 (37%), Gaps = 36/469 (7%)

Query: 360  IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
            +  +     L    +  D +    + L   +    A    L        N   +  +  +
Sbjct: 1528 VSASQDAELLRWLQEEHDMDFFAIIPLQFKESVIGALYLCLSRRAIRTGNVTFLKLLSQQ 1587

Query: 420  KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI-------LEATSDGIAIINRE- 471
             A      +    +     D         +   +  +I       L++    +  ++ + 
Sbjct: 1588 IAISVSNALLFQSLRRTITDNVTLIELQRLSYQRYKAIEEKCITLLDSLPCIVWTLDSDI 1647

Query: 472  GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
            G I  TN +    FG P +      +  F+  +        L  + +L   +  +   L 
Sbjct: 1648 GEIEYTNASKRNYFGVPEDCHDSLSWKTFIHPDHHHQFQEKLLNLKTL---ELGDIELLL 1704

Query: 532  STKEEKLLSLRIIIKKLPFSSC---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
              ++                +    + +   DI++ K+        ++ A    + K++F
Sbjct: 1705 RMEDGNYHWHLCRGLSFKEDANAKKWIVVCIDINDEKEA-------REAAMHAVNLKTNF 1757

Query: 589  LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
            LA +SHE+RTP ++  G   ++ + +     N    +  +   +S   ++ I++DLL+ S
Sbjct: 1758 LANMSHELRTPFSSFYGMLSLLSDTKL----NEEQYDIVSTAKQSCTSLVQIIDDLLNFS 1813

Query: 649  KIESGKMNLHFEP-VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQ 706
            +++SGKM L  +    ++E +++ I LV    + K + I      N+P +L  D   ++Q
Sbjct: 1814 ELKSGKMKLEPDKVFDVEENIADCIELVYPSLSSKPVQISYDIYPNVPALLAGDSAKLRQ 1873

Query: 707  IALNILSNAIHFTPSGGQIIIST--------THTSNEEVILRVRDTGVGMTNYELEKAMK 758
            +  N+L N++ FT  G  I++             +  ++   + DTG+G+   +L+    
Sbjct: 1874 VITNLLGNSVKFTTEG-HILLRCMAIDEEINAEENQCKLRFEIEDTGIGLKEEQLKLLFN 1932

Query: 759  PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
            PF Q+  S      G+GLGL +   +     G   + S   +G+     
Sbjct: 1933 PFTQVDGSTTRIYGGSGLGLSICLQICKIMDGDIGVQSVYGEGSTFWFH 1981


>gi|317032135|ref|XP_001394108.2| two-component system protein A [Aspergillus niger CBS 513.88]
          Length = 719

 Score =  290 bits (743), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 96/508 (18%), Positives = 192/508 (37%), Gaps = 30/508 (5%)

Query: 315 FDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
             +            P P   +    ++   + S +          +            P
Sbjct: 69  AQQPPAALGRIYRYTPTPSVILDPSLHVVEVSDSHVAFAGLSRALLLGRFICDICPRILP 128

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
            L        +    + +   +          +      +   P  + +     + +   
Sbjct: 129 ALDVAILFGALRAAITTQDVQSIDKICID---DASTCYTLRITPIFENSNLLYIVLEALD 185

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDI 492
             +   T ++K            +L+   D  I +++  G I++ N   + L GY  ++I
Sbjct: 186 ITKRQATSVSKPHESYSNETYKVLLDTVKDYAIFMLDTHGHIVTWNTGAALLKGYSAKEI 245

Query: 493 LRKPFTVFLEQNTPSVMNH--YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
           + + F+ F              L   L       +E       K+       ++I  +  
Sbjct: 246 IGRHFSTFYSLEDRMADKPGKELEVCLREGK---VEDEGWRYRKDGSRFWANVLITPMYA 302

Query: 551 SS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
                 ++    D++E    + ++       E+ S  K+DFLA +SHEIRTP+  ++   
Sbjct: 303 LGRHIGFTKVTRDLTERNAAETRMI---AAFEESSRLKTDFLANMSHEIRTPMNGMLLA- 358

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
                       N +  EY++ I+ S N++L ++ND+LD SK+ SG   LH +  S+D  
Sbjct: 359 ---LTSLLATDLNEQQREYSSIIEDSTNVLLQVINDVLDYSKLSSGSFTLHPDTFSVDSI 415

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII 726
            +  +   +  A +  + + +S ++N P ++  D    +Q+  N++ NA+ FT  G  + 
Sbjct: 416 TNAVVRNCKG-ALKTGVQLTSSISSNFPSQVEGDPLRYRQVLQNLVGNAVKFTEEG-YVK 473

Query: 727 ISTTHTSNEE------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
           I+TT + + E      +   V DTGVG+    L     PF +   +   R +GTGLGL +
Sbjct: 474 INTTFSEDAEDPSVYYIRTEVADTGVGVPEDALGSLFTPFTRFAETGSKRYQGTGLGLSI 533

Query: 781 AKAMVDANMGKFYIFSTPAK-GTLIEII 807
            K++ +   G       P + G++  + 
Sbjct: 534 CKSLAELMDGSVGYRPNPERHGSVFWVT 561



 Score = 54.6 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/124 (14%), Positives = 41/124 (33%), Gaps = 7/124 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH--IDPNNHIGDLLKRQNTW 143
            + +D HG++   +       G  A ++IG        +     D      ++  R+   
Sbjct: 218 IFMLDTHGHIVTWNTGAALLKGYSAKEIIGRHFSTFYSLEDRMADKPGKELEVCLREGKV 277

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +   +  +G+  +  + +   P+Y+  R   GF    +       N          ++
Sbjct: 278 EDEGWRYRKDGSRFWANVLI--TPMYALGRHI-GFTK--VTRDLTERNAAETRMIAAFEE 332

Query: 204 FSHL 207
            S L
Sbjct: 333 SSRL 336


>gi|315136851|dbj|BAJ44010.1| sensory histidine kinase AtoS [Escherichia coli DH1]
          Length = 590

 Score =  290 bits (743), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 94/467 (20%), Positives = 199/467 (42%), Gaps = 30/467 (6%)

Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
            +   +   +I      + L +  +         +++  +    I+    +   +    N
Sbjct: 140 SMLPIERNGEILGYIWANELTEDIRRQAWKMDVRIIIVLTAGLLISLLLIVLFSRRLSAN 199

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN--KRKMEIEVMQLCSILEATSDGIAI 467
              +T      A   P  +PQ   E   +   +N   + +         I+E  +DG+  
Sbjct: 200 IDIITDGLSTLAQNIPTRLPQLPGEMGQISQSVNNLAQALRETRTLNDLIIENAADGVIA 259

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
           I+R+G + + N A   + GY   +++ +P+++       +     + + L          
Sbjct: 260 IDRQGDVTTMNPAAEVITGYQRHELVGQPYSMLF---DNTQFYSPVLDTLEHGTEHV-AL 315

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
                 ++ + + L +   ++  +        +   D++  K+ + +++ A+++A     
Sbjct: 316 EISFPGRD-RTIELSVTTSRIHNTHGEMIGALVIFSDLTARKETQRRMAQAERLAT---- 370

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
              + +A V+HE+R PLTAI G+ ++++ Q   P+    + EY + + +  + +  ++  
Sbjct: 371 -LGELMAGVAHEVRNPLTAIRGYVQILRQQTSDPI----HQEYLSVVLKEIDSINKVIQQ 425

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703
           LL+ S+    +    ++ VSL+  V E + LVQ    + R+   +   N +  I AD   
Sbjct: 426 LLEFSRPRHSQ----WQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSPINADREL 481

Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
           +KQ+ LNIL NA+    + G+I I T   S+ +  + + D G G+     +K   PF   
Sbjct: 482 LKQVLLNILINAVQAISARGKIRIQTWQYSDSQQAISIEDNGCGIDLSLQKKIFDPFFTT 541

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             S      GTGLGL L++ +++A+ G   + S P  G    +I P+
Sbjct: 542 KAS------GTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILPI 582



 Score = 40.4 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/117 (10%), Positives = 37/117 (31%), Gaps = 6/117 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G +  ++       G    +++G     +    +    + + D L+          
Sbjct: 260 IDRQGDVTTMNPAAEVITGYQRHELVGQPYSMLF--DNTQFYSPVLDTLEHGTEHVALEI 317

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
            +P     + + +  +   I++ + E  G     I        + +    + ++  +
Sbjct: 318 SFPGRDRTIELSVTTS--RIHNTHGEMIGA--LVIFSDLTARKETQRRMAQAERLAT 370


>gi|303248501|ref|ZP_07334759.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
            fructosovorans JJ]
 gi|302490121|gb|EFL50041.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
            fructosovorans JJ]
          Length = 1155

 Score =  290 bits (743), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 106/732 (14%), Positives = 247/732 (33%), Gaps = 45/732 (6%)

Query: 86   TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL--LKRQNTW 143
             +     G   +++  L +  G    + +   + ++ D ++ DP+     L  LK+++  
Sbjct: 461  IFTSTPDGRYVKVNGYLARMYGYPDPEAMLAEVANIRDQVYFDPDERDSMLDTLKKRDHL 520

Query: 144  YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                       T   + + L    +  ++   +   GF              +    +++
Sbjct: 521  SNYEVRRLTR-TGNLIWVSLNIRAVCDKSGAIAHLEGF--CTDITQRKQAETVLADQERQ 577

Query: 204  FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
               + +              + S       +      + +         +L  E      
Sbjct: 578  LRVIFDNSPLGQVFFDATGTVVSCNKRHLEIMGITSDNIIGVNLVALLPILFKEALVRAL 637

Query: 264  SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
            + E S  E      +       +  F  +          ++   + +     D    L  
Sbjct: 638  AGELSRAEGPYSSVLGGRNLYLRAIFSPV-ETGTAPTPVIASIENITEERKKDATLRLLW 696

Query: 324  ETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
              V++ P    +    G + Y NP F  LT Y   +      G +  +    +      +
Sbjct: 697  AAVEQSPASIAITDLQGTIEYVNPHFSTLTGYTPDEA----KGKNPRILKSGVHPEAFYR 752

Query: 383  PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             +                   +                 ++  E      ++ +    R 
Sbjct: 753  DLWDTLLAGRVWRGELCN---RKKNGELYWEASSISPVRDEQGEISHFVAVKEDITRQRE 809

Query: 443  NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            +K ++   + +  +I  A+S GI  +  +  ++  NR  ++LFG P E++  K       
Sbjct: 810  SKERLRQLMGEFEAIFNASSVGIVHLGPDDTVVRVNRRFAELFGIPAEELAGKGLAGV-- 867

Query: 503  QNTPSVMNHYLTEILSL-DLRQTLEKITLGSTKEEKLLSLRIIIKKLP---FSSCYSLTM 558
              +   +  +  E L+L    + +        +        +  +++     +S    T 
Sbjct: 868  HESIPRLRAFRREQLALVAAGKEVHFEERFHDRGGHSFWCSVDGRRIDVANPASGSIWTF 927

Query: 559  HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
             DIS  K+ +      ++               + H+++ PL +I+   E++     GP+
Sbjct: 928  DDISARKELERVREDVER--------------IMRHDLKAPLNSIVNLPEIVA--VVGPV 971

Query: 619  GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
             +    E  + I++SG+ +L+ +   LD+ K+E+G   L  + + L   V+  +S+++  
Sbjct: 972  TDD-QRELLSEIEQSGHAMLEQIELSLDLYKMETGTYVLQAQRIDLARIVAGVVSMLEPT 1030

Query: 679  ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738
            A  K + +       +  I       + IA N++ NAI    SG  + +S     +   +
Sbjct: 1031 AKAKGVDVTLRSPEEL-FITGSALLCQTIAANLVKNAIEAETSGHAVTVSLA-EKDGRAL 1088

Query: 739  LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
            L V+     +    +    + +     +   +  G+GLG   A+ M  +  G+  + STP
Sbjct: 1089 LTVQ-NPTPVPPELIPVFFEKY-----ATSGKNGGSGLGTYSARLMTRSQRGEISMESTP 1142

Query: 799  AKGTLIEIIFPL 810
              GT++ +  P+
Sbjct: 1143 DAGTIVTVSLPV 1154



 Score =  132 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 67/516 (12%), Positives = 129/516 (25%), Gaps = 50/516 (9%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTT 148
           DA      I+ +L + +G  +   IG    ++         +         ++      T
Sbjct: 345 DAELRHLVINNKLAEFMGKASGDAIGRTDFELMPPELAARCHESDVAARDGRDIVTMIET 404

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           L          P+     P+        G+     +             ++ ++   +L+
Sbjct: 405 LGDRTFEVRKFPV-----PLGEGKMGVGGY-----IRDIGDRLRAEQALRQSEEVLRNLY 454

Query: 209 EIKKGHSSVEKEKYDIFSQQS--------PPPHLRMKNKVSSLTEYYAHKDDVLKTEKY- 259
           E                            P P   +    +   + Y   D+        
Sbjct: 455 ENAPVGIFTSTPDGRYVKVNGYLARMYGYPDPEAMLAEVANIRDQVYFDPDERDSMLDTL 514

Query: 260 ----PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
                L   E   L    +   ++LN        G + +                     
Sbjct: 515 KKRDHLSNYEVRRLTRTGNLIWVSLNIRAVCDKSGAIAHLEGFCT---DITQRKQAETVL 571

Query: 316 DEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
            + E       D  P+   F  + G +   N   L +    S + I +   L  LL    
Sbjct: 572 ADQERQLRVIFDNSPLGQVFFDATGTVVSCNKRHLEIMGITSDNIIGVN--LVALLPILF 629

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
                      L R++    +              +L +  I            P     
Sbjct: 630 KEALVRALAGELSRAEGPYSSVL---------GGRNLYLRAIFSPVETGTA-PTPVIASI 679

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
               + R     + +    L + +E +   IAI + +G I   N   S L GY  ++   
Sbjct: 680 ENITEERKKDATLRL----LWAAVEQSPASIAITDLQGTIEYVNPHFSTLTGYTPDEAKG 735

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC- 553
           K   +      P      L + L     +          K  +L      I  +      
Sbjct: 736 KNPRILKSGVHPEAFYRDLWDTLLAG--RVWRGELCNRKKNGELYWEASSISPVRDEQGE 793

Query: 554 ---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
              +     DI+  ++ K +L       E   +  S
Sbjct: 794 ISHFVAVKEDITRQRESKERLRQLMGEFEAIFNASS 829



 Score =  107 bits (268), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 40/420 (9%), Positives = 107/420 (25%), Gaps = 23/420 (5%)

Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKV 240
           +              +R + ++    +     + ++  +       +       +     
Sbjct: 309 VAARTSELVAANEALRRGESRYRAFIDATSDMAFLKDAELRHLVINNKLAEFMGKASGDA 368

Query: 241 SSLTEYYAHKDDVLKT--EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE 298
              T++     ++     E           +   E                G  +     
Sbjct: 369 IGRTDFELMPPELAARCHESDVAARDGRDIVTMIETLGDRTFEVRKFPVPLG--EGKMGV 426

Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSV 357
                   +         + E +     +  P+  F     G     N     +  Y   
Sbjct: 427 GGYIRDIGDRLRAEQALRQSEEVLRNLYENAPVGIFTSTPDGRYVKVNGYLARMYGYPDP 486

Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
           + +     ++ + D      +     +   +          R  T      N + ++   
Sbjct: 487 EAMLAE--VANIRDQVYFDPDERDSMLDTLKKRDHLSNYEVRRLTRT---GNLIWVSLNI 541

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
               ++        G   +    +  +  +  +  QL  I + +  G    +  G ++S 
Sbjct: 542 RAVCDKSGAIAHLEGFCTDITQRKQAETVLADQERQLRVIFDNSPLGQVFFDATGTVVSC 601

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
           N+   ++ G   ++I+       L       +   L   LS             S    +
Sbjct: 602 NKRHLEIMGITSDNIIGVNLVALLPILFKEALVRALAGELSRAEGP------YSSVLGGR 655

Query: 538 LLSLRIIIKKLPFS---SCYSLTMHDISEWKQEKN--KLSHAKKIAEKESSHKSDFLARV 592
            L LR I   +      +    ++ +I+E +++    +L  A       S   +D    +
Sbjct: 656 NLYLRAIFSPVETGTAPTPVIASIENITEERKKDATLRLLWAAVEQSPASIAITDLQGTI 715



 Score = 74.7 bits (182), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 45/442 (10%), Positives = 115/442 (26%), Gaps = 29/442 (6%)

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNR---------EFSGFRGFGIVHVNRVDNDPRALGK 198
            LW  E   L       AL      R           +  R       +  D      G 
Sbjct: 29  VLWRSENARLVEETRANALAHLGDARLSLQSALTARLTLLRAIAAYAASHPDLTDEQFGD 88

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
                   + +I+    + +     +F + S    L +  +              L+  +
Sbjct: 89  FAAGLMDGVSDIRSLQLARDAVVSHVFPRTSNAGILGLSLRRDLPPSQREALSRTLENGR 148

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
             +   E+             +      +  G +   +  + +  +  +  ++     + 
Sbjct: 149 TAIDGPEKLLQGGCGIIARTPVFLLGGPRLPGRMWGVATITIDADAFFHDVAV-----QR 203

Query: 319 ENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
            +     +        VY    +F  NP  + +     +  +            P +   
Sbjct: 204 GDDIRLAIRLAGNGAMVYGDQAIFADNPVTVEMAVPGGMWRLAAVPEGGWKPLRPLMPLL 263

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
                V L           A    + W    + A+       A    +   +  +     
Sbjct: 264 VGAGAVWLALW-------GAFFGFLSWPARLARAVGV--ATAALDAAKTGLERTVAARTS 314

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
           +       +     +  + ++ATSD   + + E   L  N  +++  G    D + +   
Sbjct: 315 ELVAANEALRRGESRYRAFIDATSDMAFLKDAELRHLVINNKLAEFMGKASGDAIGRTDF 374

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-CYSLT 557
             +     +  +               + +T+  T  ++   +R     L          
Sbjct: 375 ELMPPELAARCHESDVAARDGR-----DIVTMIETLGDRTFEVRKFPVPLGEGKMGVGGY 429

Query: 558 MHDISEWKQEKNKLSHAKKIAE 579
           + DI +  + +  L  ++++  
Sbjct: 430 IRDIGDRLRAEQALRQSEEVLR 451


>gi|295092339|emb|CBK78446.1| Signal transduction histidine kinase [Clostridium cf.
           saccharolyticum K10]
          Length = 885

 Score =  290 bits (743), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 88/379 (23%), Positives = 159/379 (41%), Gaps = 18/379 (4%)

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIIN----REGIILSTNRAVSKLFGYPVEDILRKP- 496
               +++ +      +     D I +IN     E   +S N    ++ G+  +     P 
Sbjct: 215 RQTEQLKRQNQLFELLSRNI-DNIFMINDLHHPERNYISEN--AGRILGFKPDPKKVSPT 271

Query: 497 -FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555
               ++++     +      +       T          E ++  L+           + 
Sbjct: 272 LLFEYMDEQDREKVKQVFDTVGESYWSCTFHYRHPALAGE-RIFLLQTYRIWTEGEDRFI 330

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
             + D ++    + +L  A + AEK +  KS+FL+R+SHEIRTP+  IIG   +I  Q  
Sbjct: 331 TVLTDQTQILSTQKELEAAIQQAEKANRAKSEFLSRMSHEIRTPMNGIIGM-GMIAMQNL 389

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
           G   + R  +    I+ S   +L ++N++LD+SKIESG++ +  +       +    +++
Sbjct: 390 G--DSSRVEDCIRKINLSSRHLLTLINEVLDMSKIESGRIEIKRDVFDFRLFLESVSNVI 447

Query: 676 QLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
              A +K +     F  ++   +  D   V QI +N+LSNA+ FTP GG I++       
Sbjct: 448 SGQARDKGLNFDVIFLGDMEEELFGDALRVNQILMNLLSNALKFTPEGGSIVLRIAKLDE 507

Query: 735 E----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
           +     +   V DTG G+     EK   PF Q          GTGLGL +++   +   G
Sbjct: 508 DSTTVWLKFEVSDTGCGIEEKNYEKIFMPFEQEHEDISHVYGGTGLGLSISRRFAELMDG 567

Query: 791 KFYIFSTPAKGTLIEIIFP 809
           +  + S   KG+   +  P
Sbjct: 568 RLTVSSQVGKGSTFTLTMP 586


>gi|289668763|ref|ZP_06489838.1| sensory box histidine kinase/response regulator hybrid [Xanthomonas
           campestris pv. musacearum NCPPB4381]
          Length = 951

 Score =  290 bits (743), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 103/776 (13%), Positives = 220/776 (28%), Gaps = 82/776 (10%)

Query: 99  SEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNT-WYGKTTLWPIEGTNL 157
           ++     +G    + +G  L +            I      Q + +          G   
Sbjct: 63  NDAYAPILGPRHAQALGAPLREFWADAWEAVRAPIEAAFAGQASRFEELPIGMNRYGVPE 122

Query: 158 YVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSV 217
                 +  PIY  + +  G   F + +        +A      ++   L E      + 
Sbjct: 123 QTWWTFSFSPIYLDDGQVGGA--FCVTNEVTARKLAQARLADEHERLIRLFEQAPMFMAF 180

Query: 218 EKEKYDIFSQQSP-----PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ 272
                      +P       H  +  +  +     A +   L        +    +    
Sbjct: 181 LSGPQHRVEFANPCYSRLIGHRDVIGRPLAEALPDAAEQGHLLRLDEVYRSGRAFAANAL 240

Query: 273 E----DFHTINLNQYTKKQYFGTLQNN----SKESFEYLSHRNHPSLSAYFDEGENLTPE 324
                        +      +  +       S    + L   +  SL     E E    +
Sbjct: 241 PYNVQAVPGGPSERRLLDLVYQPIAGADGTISGIFVQGLDITDRISLERAVREAEVRNRQ 300

Query: 325 TVDKCPIPFFVYSH--GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
            +D       + +   G +   N     +  +   + +     L        +     + 
Sbjct: 301 ILDSVMDYAIIATDMHGRVTSWNEGARRILGWSEAEMLGQ--SLQRTFTPEDVERRQMLI 358

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
                    + +        ++ + E   A          +  E +    +  +    R+
Sbjct: 359 EAAAALESGSGMDERWH---VRKSGERFWA-NGSLMVLREETGEAIGFVKVLRDRTAERL 414

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG---YPVEDILRKPFTV 499
               ++    +L +++ A+S  I   + +         + +L G             +  
Sbjct: 415 ASEALQKSERRLDALVRASSQSIFSASADWR------QLRQLVGDGVLSEAVSATPHWQE 468

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YS 555
            +  +  + +   L +  +      +E   LG   + ++    +    L         + 
Sbjct: 469 MVHPDDRARLADVLAQTTANRSGVDVEYRVLG--ADGRVGWTLMRAIPLLDEQERIAEWF 526

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKS--------------------DFLARVSHE 595
            T  DI++ +  + +L    +  E+    +S                         ++H+
Sbjct: 527 GTSADITDKRVAEEQLRQLTETLEERVRERSAALLLAEEKLRQSQKMEAVGQLTGGLAHD 586

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
               LTAI    E +   R       R   Y      S      +   LL  S+    + 
Sbjct: 587 FNNLLTAISVGLE-LLQTRIEQGKYDRLDSYVEMAQSSAARATALTQRLLAFSR----RQ 641

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715
            L    V ++  V +   ++        I ++   A+   ++L D   ++   LN+  NA
Sbjct: 642 TLAPTAVDVEALVRDMHDII-ARTLGPSIALQLRPADEAWQVLVDAPQLENALLNLCINA 700

Query: 716 IHFTPSGGQIIIST-------------THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
               P GG++ IS                 + + + L V+DTG GM+   + K  +PF  
Sbjct: 701 RDAMPDGGELTISLHNRTLDVAAAQQLELPAGDYLCLSVQDTGTGMSAEVMAKVFEPFFT 760

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
                   G+GTGLGL +       + G   I S    GT + +  P +    P D
Sbjct: 761 TKP----IGQGTGLGLSMIYGFTRQSGGHVRIDSEVGVGTTMALYLPRFTGVLPQD 812



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/352 (10%), Positives = 97/352 (27%), Gaps = 9/352 (2%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            D HG +   +E   + +G    +M+G  L        ++    + +      +  G   
Sbjct: 313 TDMHGRVTSWNEGARRILGWSEAEMLGQSLQRTFTPEDVERRQMLIEAAAALESGSGMDE 372

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
            W +  +      + + + +     E  GF    ++     +       ++ +++   L 
Sbjct: 373 RWHVRKSGERFWANGSLMVLREETGEAIGF--VKVLRDRTAERLASEALQKSERRLDALV 430

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY-PLLTSEES 267
                        +    Q      L      +   +   H DD  +        T+  S
Sbjct: 431 RASSQSIFSASADWRQLRQLVGDGVLSEAVSATPHWQEMVHPDDRARLADVLAQTTANRS 490

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
            +  +      +            L +  +   E+       +     +E      ET++
Sbjct: 491 GVDVEYRVLGADGRVGWTLMRAIPLLDEQERIAEWFGTSADITDKRVAEEQLRQLTETLE 550

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
           +            L  A        K ++V  +   GGL+   +    + +  ++ +   
Sbjct: 551 ER----VRERSAALLLAEEKLRQSQKMEAVGQL--TGGLAHDFNNLLTAISVGLELLQTR 604

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
                     + +   Q +   + A+T      + +         +E    D
Sbjct: 605 IEQGKYDRLDSYVEMAQSSAARATALTQRLLAFSRRQTLAPTAVDVEALVRD 656



 Score = 88.9 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 39/386 (10%), Positives = 105/386 (27%), Gaps = 16/386 (4%)

Query: 79  IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLL 137
               +   +       ++  +    + IG+    +IG  L +         +   + ++ 
Sbjct: 172 EQAPMFMAFLSGPQHRVEFANPCYSRLIGHR--DVIGRPLAEALPDAAEQGHLLRLDEVY 229

Query: 138 KRQNTWYGKTTLWPIE----GTNLYVPIDLAALPIYSRNREFSG--FRGFGIV-HVNRVD 190
           +    +      + ++    G +    +DL   PI   +   SG   +G  I   ++   
Sbjct: 230 RSGRAFAANALPYNVQAVPGGPSERRLLDLVYQPIAGADGTISGIFVQGLDITDRISLER 289

Query: 191 NDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK 250
               A  +      S +           +        +        +    SL   +  +
Sbjct: 290 AVREAEVRNRQILDSVMDYAIIATDMHGRVTSWNEGARRILGWSEAEMLGQSLQRTFTPE 349

Query: 251 DDVLKTEKYPLLTSEESSLPEQEDFH-TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
           D   +        + ES     E +H   +  ++        L+  + E+  ++      
Sbjct: 350 DVERRQMLIEAAAALESGSGMDERWHVRKSGERFWANGSLMVLREETGEAIGFVKVLRDR 409

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
           +      E    +   +D         S  ++F A+  +  L +      +  A   +  
Sbjct: 410 TAERLASEALQKSERRLDALVRA----SSQSIFSASADWRQLRQLVGDGVLSEAVSATPH 465

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
                  D+ A    +L ++             +  +      +        ++      
Sbjct: 466 WQEMVHPDDRARLADVLAQTTANRSGVDVEYRVLGADGRVGWTL-MRAIPLLDEQERIAE 524

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLC 455
             G   +  D R+ + ++      L 
Sbjct: 525 WFGTSADITDKRVAEEQLRQLTETLE 550



 Score = 45.4 bits (106), Expect = 0.042,   Method: Composition-based stats.
 Identities = 26/199 (13%), Positives = 61/199 (30%), Gaps = 18/199 (9%)

Query: 454 LCSILEAT---SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
           L + +E      + + ++  + +    N A + + G      L  P       +    + 
Sbjct: 36  LRNAIELMLGSPESMYVVWGDALTFFYNDAYAPILGPRHAQALGAPLRE-FWADAWEAVR 94

Query: 511 HYLTEILSLDLRQTLEKIT---LGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWK 565
             +    +    +  E           E+   +       L            ++++  K
Sbjct: 95  APIEAAFAGQASRFEELPIGMNRYGVPEQTWWTFSFSPIYLDDGQVGGAFCVTNEVTARK 154

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVS---H--EIRTPLTA-IIGFSEVIKNQRFGPLG 619
             + +L+   +   +       F+A +S   H  E   P  + +IG  +VI       L 
Sbjct: 155 LAQARLADEHERLIRLFEQAPMFMAFLSGPQHRVEFANPCYSRLIGHRDVIGRPLAEALP 214

Query: 620 NPRYIEY---ANYIDRSGN 635
           +     +    + + RSG 
Sbjct: 215 DAAEQGHLLRLDEVYRSGR 233


>gi|327439034|dbj|BAK15399.1| signal transduction histidine kinase [Solibacillus silvestris
           StLB046]
          Length = 899

 Score =  290 bits (743), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 74/257 (28%), Positives = 131/257 (50%), Gaps = 12/257 (4%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E ++ + +L  + +   + S++KS+FLA +SHE+RTPL +I+  SE++       L +  
Sbjct: 482 ELEKVQVELRQSAEQLRQSSNYKSEFLANMSHELRTPLNSILILSEMLAENHENHLSDDE 541

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             EYA  I  SG  +L+++ND+LD+SK+E+GKM+L F  + + E      +L    AN+K
Sbjct: 542 L-EYAKVIHDSGEDLLNLINDILDLSKVEAGKMDLWFREMDVYEIPQHIQNLFMPIANQK 600

Query: 683 RILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS-------- 733
            + +    AN++  I   D++   Q+  N+LSNA+ FT  G  + +              
Sbjct: 601 GLELSVDVANDLAEIFHTDVKRFHQVLNNLLSNALKFTEEGS-VTVKVDRARITPAMRQL 659

Query: 734 -NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
            +  + + V DTG+G+   +     + F Q   +   +  GTGLGL + + +     G  
Sbjct: 660 SDTWITVSVTDTGIGIPKNKQNIVFESFQQADGATVRKYGGTGLGLSICREVTKLLGGWI 719

Query: 793 YIFSTPAKGTLIEIIFP 809
            + ST  +G+   +  P
Sbjct: 720 TLSSTEGQGSTFTVYLP 736


>gi|303326366|ref|ZP_07356809.1| sensor histidine kinase/response regulator [Desulfovibrio sp.
           3_1_syn3]
 gi|302864282|gb|EFL87213.1| sensor histidine kinase/response regulator [Desulfovibrio sp.
           3_1_syn3]
          Length = 885

 Score =  290 bits (743), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 97/429 (22%), Positives = 184/429 (42%), Gaps = 15/429 (3%)

Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
              DR    A  R   +  + + + A++ +           +    +    ++ + N+ +
Sbjct: 181 RALDRIGKGADLRGAAMLSDMDRARAVSILVTLL---MGGLIIWLIVYTNKLERKKNR-E 236

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
           +    M    +     D   I N  G     +    ++ G+  E++ +            
Sbjct: 237 IAYREMLFNLLAANIDDVFFISNGRGSFEYVSPNSKRIIGFSSEELCQDN--DKFYALLT 294

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISEWK 565
             +N +L  + S    +   +         +   +R+       +     + + D ++  
Sbjct: 295 PELNEWLRTVFSDSALRGPVERAAELAGSRRQFKVRVYPVYQNGALERQIMVLTDQTDTL 354

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
             +  LS A + A   ++ KS+FL+ +SHEIRTP+ AIIG + +  ++        R  +
Sbjct: 355 MYQQTLSDALEAARGANAAKSNFLSHMSHEIRTPMNAIIGMTTIALSRLD---DRGRLED 411

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
               I +S   +L ++ND+LD+SKIE G++++  EP +L  ++   ++L+Q    E+   
Sbjct: 412 CLGKIAQSSRHLLGLINDVLDMSKIERGRLSIAHEPFNLRLSLQGIVNLIQPQIQEQGQN 471

Query: 686 IRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT--HTSNEEVILR-- 740
              S +  +   +  D   + QI +NILSNA+ FTP GG I +     H ++  V  R  
Sbjct: 472 FEVSLSEVDEEELNGDGMRLNQILINILSNAVKFTPKGGSIRLDIRQLHKNHNNVRFRFI 531

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           +RDTG+GM+   + +   PF Q   +   +  GTGLG+ + K +V    G   + S   K
Sbjct: 532 IRDTGIGMSEEFISRLYMPFEQATAATASQFGGTGLGMAITKNLVSLLGGMISVKSKEGK 591

Query: 801 GTLIEIIFP 809
           GT   +  P
Sbjct: 592 GTEFTVELP 600


>gi|228985742|ref|ZP_04145892.1| hypothetical protein bthur0001_24320 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228773914|gb|EEM22330.1| hypothetical protein bthur0001_24320 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 579

 Score =  290 bits (743), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 89/508 (17%), Positives = 176/508 (34%), Gaps = 41/508 (8%)

Query: 314 YFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                E      +   P+    +  +G+    N    ++T Y + + I     L  L   
Sbjct: 91  LLTRKEEELHTILQNMPVMVDALDYNGDFVLWNRECEIVTGYTAEEVIGNPNALRLLYPD 150

Query: 373 PKLSDNNAIKPVML----YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
                    K +         +      +  + TI W+                      
Sbjct: 151 HNYRHEIQKKFLTRGKNFRDWEMRLTCKNGEIKTIMWSN-----------ISEQFPVSGF 199

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
               +  +    +  + K+  +  +L  I +A  D   +   +G I+         F  P
Sbjct: 200 SYWAVGVDITHLKAIEEKLIQQTSELELIFQALPDLCFLTEDDGTIIDYKAGSPTKFYVP 259

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            E  + K F   L  +        + ++        +E     +   +           L
Sbjct: 260 AEAFMGKKFYEVLPTSVAQKFQEAIFQVKEKGTNAIVEYPLTINESIDFF---EARCLPL 316

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                  + + DI+E K+ +  L+ +  +A           A V+HE+R PLT I GF +
Sbjct: 317 LHDK-IMIIVRDITERKKTEELLNKSDTLA-----AIGQLAAGVAHEVRNPLTVIKGFIQ 370

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
                    +      +Y + +      +  I+ + L I+K +     +  E  ++ +  
Sbjct: 371 ------LFQINKEDQEKYFDLMLSEIERIEAILQEFLSIAKTD----EISTEKKNIYQIF 420

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
              +SL+   A    I +     +    I      +KQ+ +NIL N+I   P GG+I I 
Sbjct: 421 KNVVSLMNTKAIMTNIQVELYTDSKDIIIECSENQLKQVFINILQNSIEAMPDGGEISIH 480

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                 + +I+ V D G+G+    +++  +PF         + +GTG+GL L+  +++++
Sbjct: 481 IKEIGKDGIIISVIDKGIGIPEERIKRLGEPFY------STKEKGTGIGLMLSYKIIESH 534

Query: 789 MGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
            G   I S    GT + I  P + +  P
Sbjct: 535 QGNISIMSEVGIGTTVTIYLPKFQSKKP 562


>gi|229156231|ref|ZP_04284327.1| hypothetical protein bcere0010_24200 [Bacillus cereus ATCC 4342]
 gi|228627106|gb|EEK83837.1| hypothetical protein bcere0010_24200 [Bacillus cereus ATCC 4342]
          Length = 590

 Score =  290 bits (743), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 89/508 (17%), Positives = 176/508 (34%), Gaps = 41/508 (8%)

Query: 314 YFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                E      +   P+    +  +G+    N    ++T Y + + I     L  L   
Sbjct: 102 LLTRKEEELHTILQNMPVMVDALDYNGDFVLWNRECEIVTGYTAEEVIGNPNALRLLYPD 161

Query: 373 PKLSDNNAIKPVML----YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
                    K +         +      +  + TI W+                      
Sbjct: 162 HNYRHEIQKKFLTRGKNFRDWEMRLTCKNGEIKTIMWSN-----------ISEQFPVSGF 210

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
               +  +    +  + K+  +  +L  I +A  D   +   +G I+         F  P
Sbjct: 211 SYWAVGVDITHLKAIEEKLIQQTSELELIFQALPDLCFLTEDDGTIIDYKAGSPTKFYVP 270

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            E  + K F   L  +        + ++        +E     +   +           L
Sbjct: 271 AEAFMGKKFYEVLPTSVAQKFQEAIFQVKEKGTNAIVEYPLTINESIDFF---EARCLPL 327

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                  + + DI+E K+ +  L+ +  +A           A V+HE+R PLT I GF +
Sbjct: 328 LHDK-IMIIVRDITERKKTEELLNKSDTLA-----AIGQLAAGVAHEVRNPLTVIKGFIQ 381

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
                    +      +Y + +      +  I+ + L I+K +     +  E  ++ +  
Sbjct: 382 ------LFQINKEDQEKYFDLMLSEIERIEAILQEFLSIAKTD----EISTEKKNIYQIF 431

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
              +SL+   A    I +     +    I      +KQ+ +NIL N+I   P GG+I I 
Sbjct: 432 KNVVSLMNTKAIMTNIQVELYTDSKDIIIECSENQLKQVFINILQNSIEAMPDGGEISIH 491

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                 + +I+ V D G+G+    +++  +PF         + +GTG+GL L+  +++++
Sbjct: 492 IKEIGKDGIIISVIDKGIGIPEERIKRLGEPFY------STKEKGTGIGLMLSYKIIESH 545

Query: 789 MGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
            G   I S    GT + I  P + +  P
Sbjct: 546 QGNISIMSEVGIGTTVTIYLPKFQSKKP 573


>gi|309702530|emb|CBJ01857.1| two-component system sensor kinase [Escherichia coli ETEC H10407]
          Length = 608

 Score =  290 bits (743), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 94/467 (20%), Positives = 199/467 (42%), Gaps = 30/467 (6%)

Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
            +   +   +I      + L +  +         +++  +    I+    +   +    N
Sbjct: 158 SMLPIERNGEILGYIWANELTEDIRRQAWKMDVRIIIVLTAGLLISLLLIVLFSRRLSAN 217

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN--KRKMEIEVMQLCSILEATSDGIAI 467
              +T      A   P  +PQ   E   +   +N   + +         I+E  +DG+  
Sbjct: 218 IDIITDGLSTLAQNIPTRLPQLPGEMGQISQSVNNLAQALRETRTLNDLIIENAADGVIA 277

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
           I+R+G + + N A   + GY   +++ +P+++       +     + + L          
Sbjct: 278 IDRQGDVTTMNPAAEVITGYQRHELVGQPYSMLF---DNTQFYSPVLDTLEHGTEHV-AL 333

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
                 ++ + + L +   ++  +        +   D++  K+ + +++ A+++A     
Sbjct: 334 EISFPGRD-RTIELSVTTSRIHNTHGEMIGALVIFSDLTARKETQRRMAQAERLAT---- 388

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
              + +A V+HE+R PLTAI G+ ++++ Q   P+    + EY + + +  + +  ++  
Sbjct: 389 -LGELMAGVAHEVRNPLTAIRGYVQILRQQTSDPI----HQEYLSVVLKEIDSINKVIQQ 443

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703
           LL+ S+    +    ++ VSL+  V E + LVQ    + R+   +   N +  I AD   
Sbjct: 444 LLEFSRPRHSQ----WQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSPINADREL 499

Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
           +KQ+ LNIL NA+    + G+I I T   S+ +  + + D G G+     +K   PF   
Sbjct: 500 LKQVLLNILINAVQAISARGKIRIQTWQYSDLQQAISIEDNGCGIDLSLQKKIFDPFFTT 559

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             S      GTGLGL L++ +++A+ G   + S P  G    +I P+
Sbjct: 560 KAS------GTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILPI 600



 Score = 41.6 bits (96), Expect = 0.53,   Method: Composition-based stats.
 Identities = 21/272 (7%), Positives = 68/272 (25%), Gaps = 17/272 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G +  ++       G    +++G     +    +    + + D L+          
Sbjct: 278 IDRQGDVTTMNPAAEVITGYQRHELVGQPYSMLF--DNTQFYSPVLDTLEHGTEHVALEI 335

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
            +P     + + +  +   I++ + E  G     I        + +    + ++  +   
Sbjct: 336 SFPGRDRTIELSVTTS--RIHNTHGEMIGA--LVIFSDLTARKETQRRMAQAERLATL-- 389

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
                    E         ++P   +R   ++           + L      + +  +  
Sbjct: 390 --------GELMAGVAHEVRNPLTAIRGYVQILRQQTSDPIHQEYLSVVLKEIDSINKVI 441

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE-NLTPETVD 327
               E     +             +         +  R         +    N   E + 
Sbjct: 442 QQLLEFSRPRHSQWQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSPINADRELLK 501

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDD 359
           +  +   + +   +       +   +Y  +  
Sbjct: 502 QVLLNILINAVQAISARGKIRIQTWQYSDLQQ 533


>gi|160941292|ref|ZP_02088629.1| hypothetical protein CLOBOL_06185 [Clostridium bolteae ATCC
           BAA-613]
 gi|158435853|gb|EDP13620.1| hypothetical protein CLOBOL_06185 [Clostridium bolteae ATCC
           BAA-613]
          Length = 805

 Score =  290 bits (743), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 95/508 (18%), Positives = 179/508 (35%), Gaps = 59/508 (11%)

Query: 335 VYSHGNLFYANPSFLLL-TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393
           +   GN    N  +         ++         ++L           + +     + + 
Sbjct: 157 IPEQGNFGSENRKYAQKALHPDDLECFNENFSRESMLCMFTEGKKQITRRLRRRADNGSY 216

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
                    I    +    +                      +  D  + +++  +E+ Q
Sbjct: 217 RTVEFTAARIGNQEDECWCVLVF------------------RDVQDELLLEQERNVEISQ 258

Query: 454 LCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
           L +  +A    +  +N  +           + F     D   + F   +E    +V   Y
Sbjct: 259 LATAAKAAYQMLIAVNLTQNTYHMV--EYQR-FPVKAPDPEGR-FDELIEFEMEAVHPDY 314

Query: 513 LTEILS-----------LDLRQTLEKITLGSTKEEKLLSLRIIIK----KLPFSSCYSLT 557
             E  S                 L        ++         +                
Sbjct: 315 REEFRSKFTRKALTEAFQRGECILSMDVPHIGEDGIYHWNSTQVVKVESPYTHDLIEITL 374

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESS-----------HKSDFLARVSHEIRTPLTAIIGF 606
             +I E ++ + +    ++ A+                KSDFL+R+SH+IRTP+ AIIG 
Sbjct: 375 SRNIDEERRVQQETLEKERQAKLLLEDALKKAEKANKAKSDFLSRMSHDIRTPMNAIIGM 434

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
           +E +     G     +  +Y N I  SG  +L ++N++LD+SKIESG M L   P++L  
Sbjct: 435 TE-LAQLHIG--DEEKQRDYLNKIASSGAHLLGLINEILDVSKIESGVMELSESPLNLRA 491

Query: 667 AVSEAISLVQLYANEKRILIRTSFANN-IPRILADLRSVKQIALNILSNAIHFTPSGGQI 725
              EA  +V++     +   +     +  P ++ D R ++Q+ +NIL NA  +T   G+I
Sbjct: 492 LAGEAAEMVRISMENSQQEFQVDIDESFDPWVMGDARRIRQVLVNILENASKYTGQRGKI 551

Query: 726 IIST-----THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
             S                 + DTG+GM    +E   +PF +  +S+  +  GTGLG+ +
Sbjct: 552 TFSVCEFKKEEQRTGTYRFIIEDTGIGMKPEYMEHIFEPFSRADDSRTSKVPGTGLGMTI 611

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            K ++    G   + S   KG+   +  
Sbjct: 612 VKNLISMMDGDIRVESEYGKGSRFTVTL 639


>gi|115391627|ref|XP_001213318.1| hypothetical protein ATEG_04140 [Aspergillus terreus NIH2624]
 gi|114194242|gb|EAU35942.1| hypothetical protein ATEG_04140 [Aspergillus terreus NIH2624]
          Length = 1891

 Score =  290 bits (743), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 95/628 (15%), Positives = 205/628 (32%), Gaps = 89/628 (14%)

Query: 259  YPLLTSEESSLPEQEDFHTINLNQY--TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
             P     +    E+     ++ +    +  Q        S           +   +    
Sbjct: 818  SPGKPWGKPPGEEEATTAAVDQSIPVTSPLQDLRGPSVISPTQNPPRHPSANSFYAQLPR 877

Query: 317  EGENLTPETVDKC-----PIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
            E      +TV +      P+  F+     G + + N  F    + +  +        +  
Sbjct: 878  ELPRPFTDTVAQLMLNSVPLHLFLAKPQSGEVIWTNSKFDAYRRSQPQEQKLRDPWQN-- 935

Query: 370  LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
                     +  +         +      R+     +        F      +   E + 
Sbjct: 936  --IHSSEREHVSQEWANALRTGSQFTERVRVRRF-NDESAYRWFIFRANPLLSATGEVLY 992

Query: 430  QNGIEPEDVDTRINKRKMEIEVMQL------CSILEATSD---------GIAIINREGII 474
              G   +  +  I + K   E  +        +   +            G+  +N +  +
Sbjct: 993  WIGSFLDVHEQHIAELKATQEREKFAIDAKYRAFSNSIPQVVFEATEYRGLIFVNEQWHL 1052

Query: 475  --------------------------------------LSTNRAVSKLFGYPVEDILRKP 496
                                                   + +    KL          +P
Sbjct: 1053 YTGQKLEEALNFGFAKHVHPDDMEKCGLLSLYLAQSEKEAISETAEKLTDLVTTAPKERP 1112

Query: 497  FTVFLEQNTPSVMNHYLTEILSLDLRQTL-EKITLGSTKEEKLLSLRIIIKKLP------ 549
             +  +      ++   +  +   +  +          +K        + + ++       
Sbjct: 1113 LSHGVTPALDELVRRGVASLQKDENGRVFYSTEIRLRSKGGDFRWHLVRLVRVETSSFGS 1172

Query: 550  FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
              + +  T  DI++ K  + +L+ A +    +   K+ F + +SHEIRTPL  I+G    
Sbjct: 1173 GEASWYGTCTDINDRKNLERELNKAMQQLNNQMESKTKFFSNMSHEIRTPLNGILGTIPF 1232

Query: 610  IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
            I + +             + I  S   + ++V+++LD+S++E+GKM+L      +   + 
Sbjct: 1233 ILDTQLDT----DQRRMLDTIQNSSTNLRELVDNILDVSRVEAGKMSLVNSWFHVRSVIE 1288

Query: 670  EAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
            + I  V   A +K + I      ++P  ++ D   ++Q+ +N++ NA+ FT  G +I I 
Sbjct: 1289 DVIDTVASRAIDKGLEINYLMDVDVPPMVIGDRFRIRQVLINLVGNAVKFTAQG-EIHIC 1347

Query: 729  -------TTHTSNEEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
                   T  T   E++    V DTG G +  + E+ M+ F Q+  +   +  G+GLGL 
Sbjct: 1348 CSIYHEPTAVTKETELLLNFDVVDTGKGFSARDAERLMQRFSQLGQNGSQQHAGSGLGLF 1407

Query: 780  LAKAMVDANMGKFYIFSTPAKGTLIEII 807
            L+K +V+ + GK    S   +G      
Sbjct: 1408 LSKQLVEMHGGKLTPSSKEGQGAKFSFY 1435


>gi|34497036|ref|NP_901251.1| sensor/response hybrid [Chromobacterium violaceum ATCC 12472]
 gi|34330322|gb|AAQ59257.2| probable sensor/response hybrid [Chromobacterium violaceum ATCC
           12472]
          Length = 664

 Score =  290 bits (743), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 81/260 (31%), Positives = 134/260 (51%), Gaps = 7/260 (2%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
             +Q   +L+ A+  AE  +  KS+FLA +SHEIRTPL  +IG +++++  R     + R
Sbjct: 7   ALQQANVQLTEARDAAEAANRAKSEFLAVMSHEIRTPLNGVIGMTDLLQRTRL----DDR 62

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
              Y + + RSG  +L I++D+LD SKIE+GK  L  +P  L+  V E +  +   A  K
Sbjct: 63  QRHYVSVVHRSGEDLLAIISDILDFSKIEAGKFELDRQPFCLNLLVEEIVERLAPVAYGK 122

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI-IISTTHTSNEEV--IL 739
            + +  +       ++ D + + Q+  N++ NAI FT SG  +  +     S+  V   +
Sbjct: 123 GLELMCALPLMPVEVVGDGKRLGQVLTNLVGNAIKFTESGHVLAKVDRAGESDAGVTCRI 182

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V+DTG+G+   + ++  KPF Q  +S   R  GTGLGL +++ +V    G+  + S P 
Sbjct: 183 SVKDTGIGIAPDQQKRLFKPFSQADSSTTRRFGGTGLGLVISQRLVGMMGGRIELESEPG 242

Query: 800 KGTLIEIIFPLYDTSHPHDC 819
            G+       L   S    C
Sbjct: 243 SGSEFHFTLTLPRASDSQLC 262


>gi|327484945|gb|AEA79352.1| BarA sensory histidine kinase [Vibrio cholerae LMA3894-4]
          Length = 916

 Score =  290 bits (743), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 84/317 (26%), Positives = 147/317 (46%), Gaps = 14/317 (4%)

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568
           ++      L + +   +        K    +++ +    +           D+ E  ++ 
Sbjct: 200 VDRIRRGHLDVRIEGKMHGELDTLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQL 259

Query: 569 N----KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
                +L  AKK A++ +  KS+FLA +SHE+RTPL  +IGF+  +   +          
Sbjct: 260 EIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTN----SQA 315

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           +Y   I++S N +L I+ND+LD SK+E+GK+ L   P    E + E ++L    A+EK +
Sbjct: 316 DYLQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGL 375

Query: 685 LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT----SNEEVIL 739
            I       IPR ++ D   ++Q+  N++ N+I FT  G  I +S           ++  
Sbjct: 376 EITLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERG-NIDVSVEMRALRDDVIDLQF 434

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            VRDTG+G++  +  +  + F Q   S   R  GTGLGL + + +V    G+  + S   
Sbjct: 435 MVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLH 494

Query: 800 KGTLIEIIFPLYDTSHP 816
           +G+       L+ T  P
Sbjct: 495 QGSTFWFTLRLHTTELP 511


>gi|89899388|ref|YP_521859.1| multi-sensor signal transduction histidine kinase [Rhodoferax
           ferrireducens T118]
 gi|89344125|gb|ABD68328.1| multi-sensor signal transduction histidine kinase [Rhodoferax
           ferrireducens T118]
          Length = 476

 Score =  290 bits (743), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 93/418 (22%), Positives = 174/418 (41%), Gaps = 47/418 (11%)

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK-----MEIEVMQLCSILEATS 462
             +  + ++    A++        G   +     I  R+      +  +    S L+A+ 
Sbjct: 54  RGARLLRWLRVGDASEVAMRSGLWGEVSDRARRLIRAREQMTLESQRRLQDFLSALQASP 113

Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS---VMNHYLTEILSL 519
           +G+ +++ +G I   N+  +  FG   +  L +     +     +       Y  E++  
Sbjct: 114 NGVLLLDAQGQIEWLNQTAASHFGLDAQRDLLQHLGNLVRDPAFASYFASRDYRHELIMP 173

Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579
               T  +             L + +          L   DI+  +Q +           
Sbjct: 174 GRESTPARPVR----------LSVHLHPY-GEGRLLLLSSDITAVEQAE----------- 211

Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639
              + + DF+A VSHEIRTPLT + GF E ++     PL +     Y   + +    +  
Sbjct: 212 ---AMRRDFVANVSHEIRTPLTVLAGFVETLQT---LPLNDEERARYLALMAQQAGRMQT 265

Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSE------AISLVQLYANE--KRILIRTSFA 691
           +VNDLL +S++E   +    E +++   + +      A+S V   A+E  + +   +S A
Sbjct: 266 LVNDLLVLSRLEGSPLPSDSEGIAVPALMHQLEQDGRALSAVMNPASEPLQHLTFDSSLA 325

Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751
            +   I+     +     N++SNAI +TPSGGQI +     +++     V DTG G+   
Sbjct: 326 GD---IMGAPNELLSALGNLVSNAIRYTPSGGQIQVRARLLADDRAEFSVSDTGPGIAPE 382

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            + +  + F ++  S+     GTGLGL + K +   +  +  I STP KG++ +IIFP
Sbjct: 383 HIPRLTERFYRVDRSRSRDTGGTGLGLAIVKHVAQRHGAELKIDSTPGKGSVFKIIFP 440


>gi|103487938|ref|YP_617499.1| PAS/PAC sensor signal transduction histidine kinase [Sphingopyxis
           alaskensis RB2256]
 gi|98978015|gb|ABF54166.1| PAS/PAC sensor signal transduction histidine kinase [Sphingopyxis
           alaskensis RB2256]
          Length = 514

 Score =  290 bits (743), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 81/488 (16%), Positives = 176/488 (36%), Gaps = 26/488 (5%)

Query: 331 IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390
           +   +   G +   N        + S D    +  +       ++++      +    + 
Sbjct: 32  VVVLLDPAGTIRAINGETERKGLWSSADLCGRSHEI--FYPPDEMANGRPEADLAAALAQ 89

Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450
            +    + R+                     +Q         I  +  +    +  +E  
Sbjct: 90  GSLEREAWRVCR----DGTEYLARLTINALKDQAGVIRGFGSIVRDITEDAAMRGSIEAR 145

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
              L SIL    D + +I+  G I S + A  +LFGY   ++L +  +  + +      +
Sbjct: 146 ERHLQSILATVPDAMIVIDERGRITSFSAAAERLFGYGESELLGRNVSCLMPRADSIRHD 205

Query: 511 HYLTEILSLDLRQT--LEKITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQ 566
            Y+   L    R+   + +I +G  ++     + + + +        ++  + D++E + 
Sbjct: 206 EYIGHYLETGERRIIGIGRIVVGQRRDGSTFPMELSVGEAGGPEGRIFTGFIRDLTEKEH 265

Query: 567 EKNKLSHAKKIAEKESS--HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR-- 622
           ++ +L   +      S         + ++HE+  PLTAI  + E  ++   G    PR  
Sbjct: 266 DELRLKELQAELVHVSRLSAMGTMASTLAHELNQPLTAIANYLETTRDLVDGEGDIPRDI 325

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             E              IV  L D       +  +      L   + EA  L  + A E+
Sbjct: 326 LHEALTEAANETLRAGYIVRRLRDF----VARGEVEKTVEDLPRLIDEAGKLALIGARER 381

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG--QIIISTTHTSNEEVILR 740
            +    +F       L D   ++Q+ +NI+ NAI         ++ +ST   ++E + + 
Sbjct: 382 GVRSFFTFDPAATPTLVDRVQIQQVLVNIMRNAIEAMADSEVRELRVSTRLRADEMIEIA 441

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V D+G G+    + +  + F         + +G GLGL + + +V+A+ G+ ++   P  
Sbjct: 442 VEDSGPGIAEDVIPRLFQAFV------SSKSDGMGLGLSICRTIVEAHGGRIWVEDGPGG 495

Query: 801 GTLIEIIF 808
           G +     
Sbjct: 496 GAVFRFTL 503



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/248 (11%), Positives = 64/248 (25%), Gaps = 12/248 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH-IDPNNHIGDLLKRQNTWY--- 144
           ID  G +   S    +  G    +++G  +  +      I  + +IG  L+         
Sbjct: 163 IDERGRITSFSAAAERLFGYGESELLGRNVSCLMPRADSIRHDEYIGHYLETGERRIIGI 222

Query: 145 -GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                    +G+    P++L+            G    G +             K L  +
Sbjct: 223 GRIVVGQRRDGSTF--PMELSV----GEAGGPEGRIFTGFIRDLTEKEHDELRLKELQAE 276

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
             H+  +    +      +++    +   +     +     E      D+L         
Sbjct: 277 LVHVSRLSAMGTMASTLAHELNQPLTAIANYLETTRDLVDGEGDI-PRDILHEALTEAAN 335

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
               +                +K      +   +     L       + ++F      TP
Sbjct: 336 ETLRAGYIVRRLRDFVARGEVEKTVEDLPRLIDEAGKLALIGARERGVRSFFTFDPAATP 395

Query: 324 ETVDKCPI 331
             VD+  I
Sbjct: 396 TLVDRVQI 403



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 46/396 (11%), Positives = 105/396 (26%), Gaps = 32/396 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI---DPNNHIGDLLKRQNTWYG 145
           +D  G ++ I+ E  +     +  + G           +    P   +   L +  +   
Sbjct: 36  LDPAGTIRAINGETERKGLWSSADLCGRSHEIFYPPDEMANGRPEADLAAALAQG-SLER 94

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFG-IVHVNRVDNDPRALGKRLDKKF 204
           +      +GT     + + AL    +       RGFG IV     D   R   +  ++  
Sbjct: 95  EAWRVCRDGTEYLARLTINAL--KDQAGVI---RGFGSIVRDITEDAAMRGSIEARERHL 149

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLKTEK--- 258
             +         V  E+  I S  +             +         + D ++ ++   
Sbjct: 150 QSILATVPDAMIVIDERGRITSFSAAAERLFGYGESELLGRNVSCLMPRADSIRHDEYIG 209

Query: 259 YPLLTSEES--SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL--SHRNHPSLSAY 314
           + L T E     +         + + +  +   G         F                
Sbjct: 210 HYLETGERRIIGIGRIVVGQRRDGSTFPMELSVGEAGGPEGRIFTGFIRDLTEKEHDELR 269

Query: 315 FDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKY--KSVDDIEIAGGLSTLLDA 372
             E +           +     +  +    N     +  Y   + D ++  G +   +  
Sbjct: 270 LKELQAELVHVSRLSAMGTMASTLAH--ELNQPLTAIANYLETTRDLVDGEGDIPRDILH 327

Query: 373 PKLSDN-----NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
             L++       A   V   R           +  +    + +  +  I   +       
Sbjct: 328 EALTEAANETLRAGYIVRRLRDFVARGEVEKTVEDLPRLIDEAGKLALIGARERGVRSFF 387

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
                  P  VD    ++ +   V  + + +EA +D
Sbjct: 388 TFDPAATPTLVDRVQIQQVL---VNIMRNAIEAMAD 420


>gi|328952039|ref|YP_004369373.1| multi-sensor signal transduction histidine kinase [Desulfobacca
           acetoxidans DSM 11109]
 gi|328452363|gb|AEB08192.1| multi-sensor signal transduction histidine kinase [Desulfobacca
           acetoxidans DSM 11109]
          Length = 774

 Score =  290 bits (743), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 83/408 (20%), Positives = 163/408 (39%), Gaps = 52/408 (12%)

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP---------- 488
           +  I +++++    +   ++E  +D I  ++ EG ILS NR  +    +           
Sbjct: 372 EVEIQRKELQKSEARYKGLVENATDLIYTVDNEGRILSINRFAANFLSHRQSIGTPPTQE 431

Query: 489 --------VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
                    ED + + F   +   +      ++ EI +    ++         +E     
Sbjct: 432 VSGDTCVLPEDFIGRTFYEVMSDKSADFHMEWIQEIRNTGRSRSKRHQVSIGDRE---FW 488

Query: 541 LRIIIKKLPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
               I  L           +   D++  K  +++L + +K+A   +       A V+HEI
Sbjct: 489 FSTSIVGLKDEFGQVYAYEIISRDVTGRKTMEDRLINMEKLASIGT-----LAAGVAHEI 543

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
             P++ I+GFSE++  Q       P   E    I+  G     IV +L+  ++       
Sbjct: 544 NNPISVILGFSEILLEQ---TEQMPDLHETLKIIEEEGLKCKKIVENLMTFAR------T 594

Query: 657 LHFEPV--SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714
                +   ++  + + I +V+     K+I + T+F   +P++  D + ++Q+ +N+++N
Sbjct: 595 PERIEIVTDINNTLDKMIQVVKNTLLTKKIRLETNFQPGLPQVKGDPQELQQVFINLINN 654

Query: 715 AIHFTPSGGQIIISTTHT-SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
           A+     GG + + T  T   ++V++   DTG G+   +  K   PF          GEG
Sbjct: 655 AVAAMKGGGLLKVKTALTHDRQKVMIEFSDTGRGIPKKDQPKIFDPFFTTKK----VGEG 710

Query: 774 TGLGLPLAKAMVDANMGKFY-----IFSTPAK-GTLIEIIFPLYDTSH 815
           TGLGL +   ++    G        +   P K GT   +  PL   S 
Sbjct: 711 TGLGLSMCYGIITKFGGNISFVSYPVEDYPGKHGTSFTVQLPLASPSE 758


>gi|301309591|ref|ZP_07215533.1| probable two-component system sensor histidine kinase [Bacteroides
           sp. 20_3]
 gi|300832680|gb|EFK63308.1| probable two-component system sensor histidine kinase [Bacteroides
           sp. 20_3]
          Length = 768

 Score =  290 bits (743), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 87/391 (22%), Positives = 159/391 (40%), Gaps = 33/391 (8%)

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEAT-------SDGIAIINREGIILSTNRAVSKLFG 486
             E    +  +  +  E   L   LE+        S+G+   + +           K   
Sbjct: 389 RREASHKKQAQESLRKEKEFLSLALESGDIFAFRYSNGVFEFDHD---------FYKSLD 439

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
            P++ I    F   +          +   +L              +   +  +       
Sbjct: 440 MPIKPITSTQFQESIHPEDREDFIQH-KHLLDTGFPSRKITRRRYNFNGKGHIWWEFRYA 498

Query: 547 KLPFSS-------CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
           +              +    +I + K+ +  L  A+  AE+    KS FLA +SHEIRTP
Sbjct: 499 QAKNGQDSTRNNVGVNGLCLNIQQSKEVEEDLIKARIRAEEADQMKSAFLANMSHEIRTP 558

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L AI+GFSE++ +     +      E+   I ++ +L+L ++ND+LD+S+IESGKM+   
Sbjct: 559 LNAIVGFSELLTSDM--EISPNERDEFMQVISKNSDLLLKLINDILDLSRIESGKMSFTL 616

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719
               L+E +S      QL   +  + ++         I ADL  + Q+  N+++NA  FT
Sbjct: 617 TNCDLNELLSHIYRTHQLLMPQ-GVALKIQLPVLPAIIQADLHRLTQVITNLINNAAKFT 675

Query: 720 PSGGQIIISTTHT-SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
             G  I+I   +T     + + V DTG G+   +  +  + F ++        +GTGLGL
Sbjct: 676 TQG-YILIKYDYTQDKRWIQISVTDTGKGIPADKQAQVFERFNKLD----EFAQGTGLGL 730

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            + + +++   G   + S   +G+   +  P
Sbjct: 731 AICQIIIEHFGGYITLESKEGEGSTFIVTLP 761


>gi|262383487|ref|ZP_06076623.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262294385|gb|EEY82317.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 768

 Score =  290 bits (743), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 87/391 (22%), Positives = 159/391 (40%), Gaps = 33/391 (8%)

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEAT-------SDGIAIINREGIILSTNRAVSKLFG 486
             E    +  +  +  E   L   LE+        S+G+   + +           K   
Sbjct: 389 RREASHKKQAQESLRKEKEFLSLALESGDIFAFRYSNGVFEFDHD---------FYKSLD 439

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
            P++ I    F   +          +   +L              +   +  +       
Sbjct: 440 MPIKPITSTQFQESIHPEDREDFIQH-KHLLDTGFPSRKITRRRYNFNGKGHIWWEFRYA 498

Query: 547 KLPFSS-------CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
           +              +    +I + K+ +  L  A+  AE+    KS FLA +SHEIRTP
Sbjct: 499 QAKNGQDSTRNNVGVNGLCLNIQQSKEVEEDLIKARIRAEEADQMKSAFLANMSHEIRTP 558

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L AI+GFSE++ +     +      E+   I ++ +L+L ++ND+LD+S+IESGKM+   
Sbjct: 559 LNAIVGFSELLTSDM--EISPNERDEFMQVISKNSDLLLKLINDILDLSRIESGKMSFTL 616

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719
               L+E +S      QL   +  + ++         I ADL  + Q+  N+++NA  FT
Sbjct: 617 TNCDLNELLSHIYRTHQLLMPQ-GVALKIQLPVLPAIIQADLHRLTQVITNLINNAAKFT 675

Query: 720 PSGGQIIISTTHT-SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
             G  I+I   +T     + + V DTG G+   +  +  + F ++        +GTGLGL
Sbjct: 676 TQG-YILIKYDYTQDKRWIQISVTDTGKGIPADKQAQVFERFNKLD----EFAQGTGLGL 730

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            + + +++   G   + S   +G+   +  P
Sbjct: 731 AICQIIIEHFGGYITLESKEGEGSTFIVTLP 761


>gi|256841370|ref|ZP_05546877.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256737213|gb|EEU50540.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 768

 Score =  290 bits (743), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 87/391 (22%), Positives = 159/391 (40%), Gaps = 33/391 (8%)

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEAT-------SDGIAIINREGIILSTNRAVSKLFG 486
             E    +  +  +  E   L   LE+        S+G+   + +           K   
Sbjct: 389 RREASHKKQAQESLRKEKEFLSLALESGDIFAFRYSNGVFEFDHD---------FYKSLD 439

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
            P++ I    F   +          +   +L              +   +  +       
Sbjct: 440 MPIKPITSTQFQESIHPEDREDFIQH-KHLLDTGFPSRKITRRRYNFNGKGHIWWEFRYA 498

Query: 547 KLPFSS-------CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
           +              +    +I + K+ +  L  A+  AE+    KS FLA +SHEIRTP
Sbjct: 499 QAKNGQDSTRNNVGVNGLCLNIQQSKEVEEDLIKARIRAEEADQMKSAFLANMSHEIRTP 558

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L AI+GFSE++ +     +      E+   I ++ +L+L ++ND+LD+S+IESGKM+   
Sbjct: 559 LNAIVGFSELLTSDM--EISPNERDEFMQVISKNSDLLLKLINDILDLSRIESGKMSFTL 616

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719
               L+E +S      QL   +  + ++         I ADL  + Q+  N+++NA  FT
Sbjct: 617 TNCDLNELLSHIYRTHQLLMPQ-GVALKIQLPVLPAIIQADLHRLTQVITNLINNAAKFT 675

Query: 720 PSGGQIIISTTHT-SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
             G  I+I   +T     + + V DTG G+   +  +  + F ++        +GTGLGL
Sbjct: 676 TQG-YILIKYDYTQDKRWIQISVTDTGKGIPADKQAQVFERFNKLD----EFAQGTGLGL 730

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            + + +++   G   + S   +G+   +  P
Sbjct: 731 AICQIIIEHFGGYITLESKEGEGSTFIVTLP 761


>gi|255014411|ref|ZP_05286537.1| putative two-component regulator sensor kinase [Bacteroides sp.
           2_1_7]
          Length = 768

 Score =  290 bits (743), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 87/391 (22%), Positives = 159/391 (40%), Gaps = 33/391 (8%)

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEAT-------SDGIAIINREGIILSTNRAVSKLFG 486
             E    +  +  +  E   L   LE+        S+G+   + +           K   
Sbjct: 389 RREASHKKQAQESLRKEKEFLSLALESGDIFAFRYSNGVFEFDHD---------FYKSLD 439

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
            P++ I    F   +          +   +L              +   +  +       
Sbjct: 440 MPIKPITSTQFQESIHPEDREDFIQH-KHLLDTGFPSRKITRRRYNFNGKGHIWWEFRYA 498

Query: 547 KLPFSS-------CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
           +              +    +I + K+ +  L  A+  AE+    KS FLA +SHEIRTP
Sbjct: 499 QAKNGQDSTRNNVGVNGLCLNIQQSKEVEEDLIKARIRAEEADQMKSAFLANMSHEIRTP 558

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L AI+GFSE++ +     +      E+   I ++ +L+L ++ND+LD+S+IESGKM+   
Sbjct: 559 LNAIVGFSELLTSDM--EISPNERDEFMQVISKNSDLLLKLINDILDLSRIESGKMSFTL 616

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719
               L+E +S      QL   +  + ++         I ADL  + Q+  N+++NA  FT
Sbjct: 617 TNCDLNELLSHIYRTHQLLMPQ-GVALKIQLPVLPAIIQADLHRLTQVITNLINNAAKFT 675

Query: 720 PSGGQIIISTTHT-SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
             G  I+I   +T     + + V DTG G+   +  +  + F ++        +GTGLGL
Sbjct: 676 TQG-YILIKYDYTQDKRWIQISVTDTGKGIPADKQAQVFERFNKLD----EFAQGTGLGL 730

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            + + +++   G   + S   +G+   +  P
Sbjct: 731 AICQIIIEHFGGYITLESKEGEGSTFIVTLP 761


>gi|229133469|ref|ZP_04262296.1| hypothetical protein bcere0014_23880 [Bacillus cereus BDRD-ST196]
 gi|228649869|gb|EEL05877.1| hypothetical protein bcere0014_23880 [Bacillus cereus BDRD-ST196]
          Length = 590

 Score =  290 bits (743), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 88/501 (17%), Positives = 173/501 (34%), Gaps = 41/501 (8%)

Query: 314 YFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                E      +   P+    +  +G+    N    ++T Y + + I     L  L   
Sbjct: 102 LLSRKEEELHTILQNMPVMVDALDYNGDFVLWNRECEIVTGYTAEEIIGNPNALQLLYPD 161

Query: 373 PKLSDNNAIKPVML----YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
                    K +         + +    +  + TI W+                      
Sbjct: 162 HNYRHQIQNKFLTRGKNFRDWEMSLTCKNGEIKTIMWSN-----------ISEQFPVTGF 210

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
               +  +    +  + +++ +  +L  I +A  D   +   +G I+         F  P
Sbjct: 211 SYWAVGVDITHLKAIEEQLKQQTSELELIFKALPDLCFLTEDDGTIIDYKAGSPTKFYVP 270

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            E  + K F   L           + ++        +E I         +         L
Sbjct: 271 AEAFMGKKFYEILPSPVAQQFQEAIRQLKEEGKNVIVEYILTI---NGSIDFFEARCLPL 327

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                  + + DI+E K+ +  L+ +  +A           A V+HE+R PLT I GF +
Sbjct: 328 LQDK-IMIIVRDITERKKAEELLNKSDTLA-----AIGQLAAGVAHEVRNPLTVIKGFIQ 381

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
                    +      +Y + +      +  I+ + L I+K +     ++ E  ++ +  
Sbjct: 382 ------LFQINKEDQEKYFDLMLSEIERIEAILQEFLSIAKTD----EINTEKKNIYQIF 431

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
              +SL+   A    I +     +    I      +KQ+ +NIL N+I     GG+I I 
Sbjct: 432 KNVVSLINTKAIMTNIQVELFTDSKEIIIECSENQLKQVFINILQNSIEAMLDGGKISIH 491

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                 + VI+ V D G+G+    +++  +PF         + +GTG+GL L+  +++ +
Sbjct: 492 IKEIHKKGVIISVIDEGIGIPEERIKRLGEPFY------STKEKGTGIGLMLSYKIIEGH 545

Query: 789 MGKFYIFSTPAKGTLIEIIFP 809
            G   I S    GT + I  P
Sbjct: 546 QGTISIMSEVGVGTTVTIYLP 566


>gi|289581728|ref|YP_003480194.1| PAS/PAC sensor signal transduction histidine kinase [Natrialba
           magadii ATCC 43099]
 gi|289531281|gb|ADD05632.1| PAS/PAC sensor signal transduction histidine kinase [Natrialba
           magadii ATCC 43099]
          Length = 951

 Score =  290 bits (743), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 114/763 (14%), Positives = 257/763 (33%), Gaps = 70/763 (9%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMR----LCDVSDILHIDPNNHIGDL-LKRQNTW 143
           +D    +K I E     +G     ++G      + +      ++P + +      R+ + 
Sbjct: 215 LDGSFEIKWIDETAETILGLDRESVLGRPKHAVVEEQLADRVVEPPSFVSQAGYGRRESD 274

Query: 144 YGKTTLWPIEGTN------------------------LYVPIDLAALPIYSRNREFSGFR 179
               T     G++                            ++  + PI  +   ++G R
Sbjct: 275 EDDETPTDTAGSDNESQHTTDEAPPADTLEFKLVDDRGKRWLEYQSKPI--KTGAYAGGR 332

Query: 180 GFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHS-SVEKEKYDIFSQQSPPPHLRMKN 238
                             K+  + F+ L +  + ++     E   I S       ++  +
Sbjct: 333 -VEFYDDITDRKRSEGQLKKSQEAFNTLVDTVEEYAIFRLDEDGRIISWNEGAHQIKGYD 391

Query: 239 KVSSLTEY----YAHKDDVLKTEKYPLLTSEESSLPEQEDFH-TINLNQYTKKQYFGTLQ 293
           +   L E+    Y  +D  +   +  L  + E+   E E +    + +Q+        ++
Sbjct: 392 RDEILGEHFSTFYTDEDRAMNVPERNLQAALETGSAEDEGWRVRSDGSQFWANVTITPIR 451

Query: 294 NNSKESFEYLSHRNH-PSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLL 351
                   +L              E E       ++     + V +       N     L
Sbjct: 452 AADGTHQGFLKVTRDMTDRRNREQELETELQRVFNRVSDALYAVDNEFRFTLVNDRAEEL 511

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411
             Y   D +     L  +  +    D+               I     L+  +       
Sbjct: 512 LGYPEADLLGE--SLWDVFPSAAEIDDVWDAFHTAR---DEQIPTDYELYYPR------- 559

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA-IINR 470
                 + +AN +P     +    +  + +  ++ +E    +  +I E   +G+  + + 
Sbjct: 560 ---LGFWVEANLYPSETGISVYFRDVSERKQREQALEESKQRYRTIAEYFPNGVVALFDH 616

Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530
           +           +       +I    F       T   +   L   L  D +        
Sbjct: 617 DLEYTLAAGQGFEKIDEEPSEIEGASFENTWTPETRDTLEPVLRSALEGDEQSV---EFW 673

Query: 531 GSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
              +E  L ++ +   +    +  ++  HDI+E K+ + KL       E+ +     F  
Sbjct: 674 HDDREWMLYAVPVTDSEGTVFAGMTM-AHDITERKENQRKLEETVAQLEESNKRLEQFAY 732

Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650
             SH+++ PL  +  + + +  +R+    +    E+  Y       +  +++ LL  S++
Sbjct: 733 AASHDLQEPLRMVSSYLQ-LIERRYSDAFDEDGEEFLEYAVDGAERMRRMIDGLLAYSRV 791

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710
           E+    L  EP+ LD+  +     +QL   E    I  +  + +PR+  D   ++Q+  N
Sbjct: 792 ETRGDPL--EPIDLDDVFANVREDLQLQIAETNAEITVA-DDGLPRVRGDANQLRQVFQN 848

Query: 711 ILSNAIHFTPSGG-QIIISTT---HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
           +L NA+ ++     +I +           E ++ V D G+G+ + + ++  + F ++ N 
Sbjct: 849 LLENALEYSGDDRPRIHVDAESRFRDRRREWVISVHDEGIGIESSDQDRVFEVFERLHNP 908

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
                 GTG+GL L + +V+ + G+ +I S P   T +    P
Sbjct: 909 --EDHPGTGIGLALCERIVERHGGEMWIESEPGAWTTVSFTVP 949



 Score =  104 bits (259), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 58/514 (11%), Positives = 144/514 (28%), Gaps = 58/514 (11%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D HG ++ + +      G    ++    +  + D   I         +    T   +  +
Sbjct: 39  DEHGDIEVVDDRFRSLTGYPGEELTDTHISALFDNAGI-------AAIDDVLTSPSEDDV 91

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
                         +  P+               V V RV     A    LD     + E
Sbjct: 92  VETAVDVQ----TASGDPLS------------CTVRVTRVPPAGDAREDELDSVLCFVRE 135

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT-EKYPLLTSEESS 268
              G +   +   ++         L  +++        +      ++     L +SE   
Sbjct: 136 RGGGSTVGSEPVPEVDGASERTVELEPESEPEMEPGPESESKPKSESKSPLELTSSETDR 195

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
                    +N          G+ +    +                  +   +  +  D+
Sbjct: 196 ASADSIKAALNGASIGAIVLDGSFEIKWIDETAETILGLDRESVLGRPKHAVVEEQLADR 255

Query: 329 CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388
              P             PSF+    Y   +  E         D    +D         + 
Sbjct: 256 VVEP-------------PSFVSQAGYGRRESDE---------DDETPTDTAGSDNESQHT 293

Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
           +D    A +     +    +  L     P +          +     +  D + ++ +++
Sbjct: 294 TDEAPPADTLEFKLVDDRGKRWLEYQSKPIKTGAYAG---GRVEFYDDITDRKRSEGQLK 350

Query: 449 IEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
                  ++++   +  I  ++ +G I+S N    ++ GY  ++IL + F+ F      +
Sbjct: 351 KSQEAFNTLVDTVEEYAIFRLDEDGRIISWNEGAHQIKGYDRDEILGEHFSTFYTDEDRA 410

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISE 563
           +       + +     + E        +       + I  +  +      +     D+++
Sbjct: 411 MNVPE-RNLQAALETGSAEDEGWRVRSDGSQFWANVTITPIRAADGTHQGFLKVTRDMTD 469

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
            +  + +L   +   ++  +  SD L  V +E R
Sbjct: 470 RRNREQEL---ETELQRVFNRVSDALYAVDNEFR 500



 Score = 45.0 bits (105), Expect = 0.051,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 38/105 (36%), Gaps = 3/105 (2%)

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
           E  V +  ++  A   G+   +  G I   +     L GYP E++     +   +    +
Sbjct: 18  ERRVERYRALARAIDGGLCQCDEHGDIEVVDDRFRSLTGYPGEELTDTHISALFDNAGIA 77

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
            ++  LT     D    +E      T     LS  + + ++P + 
Sbjct: 78  AIDDVLTSPSEDD---VVETAVDVQTASGDPLSCTVRVTRVPPAG 119



 Score = 41.9 bits (97), Expect = 0.39,   Method: Composition-based stats.
 Identities = 33/339 (9%), Positives = 85/339 (25%), Gaps = 78/339 (23%)

Query: 316 DEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVD----------DIEIAG 364
           +                       G++   +  F  LT Y   +          D     
Sbjct: 18  ERRVERYRALARAIDGGLCQCDEHGDIEVVDDRFRSLTGYPGEELTDTHISALFDNAGIA 77

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ-----------------WNR 407
            +  +L +P   D+     V +  +    ++ + R+  +                    R
Sbjct: 78  AIDDVLTSPS-EDDVVETAVDVQTASGDPLSCTVRVTRVPPAGDAREDELDSVLCFVRER 136

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM------------------EI 449
                +   P  + +   E   +   E E       + +                     
Sbjct: 137 GGGSTVGSEPVPEVDGASERTVELEPESEPEMEPGPESESKPKSESKSPLELTSSETDRA 196

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
               + + L   S G  +++    I   +     + G   E +L +P    +E+     +
Sbjct: 197 SADSIKAALNGASIGAIVLDGSFEIKWIDETAETILGLDRESVLGRPKHAVVEEQLADRV 256

Query: 510 NH---YLTEILSLDLRQTLEKIT---------------------------LGSTKEEKLL 539
                ++++          +  T                           L   + ++ L
Sbjct: 257 VEPPSFVSQAGYGRRESDEDDETPTDTAGSDNESQHTTDEAPPADTLEFKLVDDRGKRWL 316

Query: 540 SLRIIIKKLPF-SSCYSLTMHDISEWKQEKNKLSHAKKI 577
             +    K    +        DI++ K+ + +L  +++ 
Sbjct: 317 EYQSKPIKTGAYAGGRVEFYDDITDRKRSEGQLKKSQEA 355


>gi|74312741|ref|YP_311160.1| sensory histidine kinase AtoS [Shigella sonnei Ss046]
 gi|73856218|gb|AAZ88925.1| sensor protein AtoS for response regulator AtoC [Shigella sonnei
           Ss046]
          Length = 608

 Score =  290 bits (743), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 83/371 (22%), Positives = 171/371 (46%), Gaps = 28/371 (7%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            + +         I+E  +DG+  I+R+G + + N A   + GY   +++ +P+++    
Sbjct: 254 AQALRETRTLNDLIIENAADGVIAIDRQGDVTTMNPAAEVITGYQRHELVGQPYSMLF-- 311

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMH 559
              +     + + L                ++ + + L +   ++  +        +   
Sbjct: 312 -DNTQFYSPVLDTLEHGTEHV-ALEISFPGRD-RTIELSVTTSRIHNTHGEMIGALVIFS 368

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           D++  K+ + +++ A+++A        + +A V+HE+R PLTAI G+ ++++ Q   P+ 
Sbjct: 369 DLTARKETQRRMAQAERLAT-----LGELMAGVAHEVRNPLTAIRGYVQILRQQTSDPI- 422

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
              + EY + + +  + +  ++  LL+ S+    +    ++ VSL+  V E + LVQ   
Sbjct: 423 ---HQEYLSVVLKEIDSINKVIQQLLEFSRPRHSQ----WQQVSLNALVEETLVLVQTAG 475

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
            + R+   +   N +  I AD   +KQ+ LNIL NA+    + G+I I T   S+ +  +
Sbjct: 476 VQARVDFISELDNELSPINADRELLKQVLLNILINAVQAISARGKIRIQTWQYSDSQQAI 535

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            + D G G+     +K   PF     S      GTGLGL L++ +++A+ G   + S P 
Sbjct: 536 SIEDNGCGIDLSLQKKIFDPFFTTKAS------GTGLGLALSQRIINAHQGDIRVASLPG 589

Query: 800 KGTLIEIIFPL 810
            G    +I P+
Sbjct: 590 YGATFTLILPI 600



 Score = 40.8 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/117 (10%), Positives = 37/117 (31%), Gaps = 6/117 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G +  ++       G    +++G     +    +    + + D L+          
Sbjct: 278 IDRQGDVTTMNPAAEVITGYQRHELVGQPYSMLF--DNTQFYSPVLDTLEHGTEHVALEI 335

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
            +P     + + +  +   I++ + E  G     I        + +    + ++  +
Sbjct: 336 SFPGRDRTIELSVTTS--RIHNTHGEMIGA--LVIFSDLTARKETQRRMAQAERLAT 388


>gi|46578509|ref|YP_009317.1| sensory box histidine kinase [Desulfovibrio vulgaris str.
            Hildenborough]
 gi|46447920|gb|AAS94576.1| sensory box histidine kinase [Desulfovibrio vulgaris str.
            Hildenborough]
 gi|311232436|gb|ADP85290.1| signal transduction histidine kinase, nitrogen specific, NtrB
            [Desulfovibrio vulgaris RCH1]
          Length = 1105

 Score =  290 bits (743), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 102/810 (12%), Positives = 231/810 (28%), Gaps = 104/810 (12%)

Query: 72   NTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIG--MRLCDVSDILHIDP 129
            +  +F             D       +S  + +  G  A  ++     L  +        
Sbjct: 327  DGMLFSVDAPP-------DGPHRYTYVSRGVERLFGLSAEAVLADPRALEALVVPEDRSR 379

Query: 130  NNHIG-DLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNR 188
            +  +    ++ +  +     +   +G+       + A P +      S     G+     
Sbjct: 380  HTALQQHAIRTRTPFDMMLRIAVADGS--RRIFHVRAKPRHDDG---SSHAWDGVCTDVT 434

Query: 189  VDNDPRALGKRLDKKFSHLHEIKKGH----SSVEKEKYDIFSQQ---SPPPHLRMKN--- 238
               + +   +  +   + + +          S++ +                +R ++   
Sbjct: 435  TAVEQQHALRERESMLAAIGDNLPHGGIFRVSLDAQGLRFMYVSQGIERQLGIRPESLYK 494

Query: 239  KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE 298
              S L   +   D  L  E       + + +     +  ++   +          ++   
Sbjct: 495  DSSVLLARFDRSDRALLREACQRCLDDGTPVDITVRYTHVSGRIHWLHLRMARHASDRAC 554

Query: 299  SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP----------FFVYSHGNLFYANPSF 348
                       +      +        +                        L YA+   
Sbjct: 555  RI-LDGLAIDETQLVLQRDALREHERILTALGDSLHEGAIYTCEVLPEGTSRLLYASSQA 613

Query: 349  LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
              L         +    +      P+  +  A        + RT      RL  I  +  
Sbjct: 614  GRLMGVPIQRLYDDFDAVVAERIHPEDLEGLAKAEC---HAQRTLEPLDLRL-RILADEG 669

Query: 409  NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468
                +              +   G+  +    +  +  +E     L  I+EA    +  I
Sbjct: 670  EVRWLHVRSAPSPRAGGGFL-WQGVVLDITALKRTEIALETTRRHLHDIIEAMPSALFGI 728

Query: 469  NREGIILSTNRAVSKLFGYPVE--------------DILRKPFTVFLEQNTPSVMNHYLT 514
            + +  +   N A  +L G+                 +    P          +     + 
Sbjct: 729  DADENVTCWNAAARRLLGFGDPRPHERATASPTGDGEPREHPVMPLTSLPRLAPYAALVR 788

Query: 515  EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL---PFSSCYSLTMHDISEWKQEKNKL 571
              L+       E+  L     ++   + +   +           L + D+++  + +  +
Sbjct: 789  TSLASGTTLRAERTALRLDSGQRFDDVVVYPLQDALKTHRGEAMLRLDDVTDRVRLEEMV 848

Query: 572  SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN----------- 620
               +K+            A ++HEI  PL  ++   + ++ +    L             
Sbjct: 849  VQNEKML-----SIGGLAAGMAHEINNPLAGVLQGVQNVRRRFSPTLAANAADAEACGLS 903

Query: 621  -PRYIEYANY---------IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
                 +Y            I  SG     IV ++L+ S+    + +L   P  L+  + +
Sbjct: 904  LEAMQQYMQRRGILFLLDGIRESGERAARIVRNMLEFSR----RSSLEKIPTDLNALLHK 959

Query: 671  AISLVQLYANE------KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS--- 721
             +       +       KR+ I      ++P IL     ++Q+ +N++ NA+H   +   
Sbjct: 960  VVEFASADFDIHDDYDFKRVRILFETQPDLPPILCAPGEMEQVLVNLVRNALHAMAAVRS 1019

Query: 722  -GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
                I + +  T    V + V D G GM+     K  +PF          G+GTGLGL +
Sbjct: 1020 TTPTITLRSRRTEKG-VRIEVEDNGPGMSEDVRRKVFEPFFTTKAP----GKGTGLGLSV 1074

Query: 781  AKAMVDA-NMGKFYIFSTPAKGTLIEIIFP 809
            +  +V   + G   + S P +GT   I  P
Sbjct: 1075 SYFIVTRFHKGLLRVESAPGEGTRFIIELP 1104



 Score =  112 bits (279), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 50/572 (8%), Positives = 141/572 (24%), Gaps = 61/572 (10%)

Query: 52  SNFTDQNQESVSNTNYLDSE----NTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTI- 106
                    +V +     +     +  V D  P   RF   +D H  L  ++  L   + 
Sbjct: 30  EGTVCTPDIAVPDKTTSAAGLSALHGHVLDADPTP-RFV--LDDHLRLVLLNPALADLLC 86

Query: 107 -----------GNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGT 155
                      G     + G  + +V               ++   +      + P  G 
Sbjct: 87  HDAIGRHGNAVGPSPDTLTGRHITEVFTPDAFTQMATALADVQSGLSPAHALLIKPAMGD 146

Query: 156 NLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHS 215
           +    + L   P+   +R F      G +                +     + +     +
Sbjct: 147 SY---LRLRIFPVPHGDRTFIA----GDLAPADTPCRSELQMFEQEATLRAIGDNLPDCA 199

Query: 216 SVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL--------LTSEES 267
              +      +         + +      E   +  ++L+    P             + 
Sbjct: 200 IFSQRVLPDGTIIPRYRSRSVSSLFGIPFEMAMNAQELLRLVVVPEDSHMFDANAIQAQG 259

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS----LSAYFDEGENLTP 323
           S         +N       Q     +     S  +    +  +          E +    
Sbjct: 260 SFHGAIRIRRMNDGAMRWIQVHAAARPQPDGSSIWDGSVSDITHLKKQERSLRERDLTIR 319

Query: 324 ETVDKCPIPFF------VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
              D  P                  Y +     L    +   +     L  L+     S 
Sbjct: 320 SIGDNMPDGMLFSVDAPPDGPHRYTYVSRGVERLFGLSAEAVLADPRALEALVVPEDRSR 379

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
           + A++   +             L     +      +  +  +  +    +   +G+  + 
Sbjct: 380 HTALQQHAIRTRT----PFDMMLRIAVADGSRR--IFHVRAKPRHDDGSSHAWDGVCTDV 433

Query: 438 VDTRINKRKMEIEVMQLCSILEATSD-GI--AIINREG-IILSTNRAVSKLFGYPVEDIL 493
                 +  +      L +I +     GI    ++ +G   +  ++ + +  G   E + 
Sbjct: 434 TTAVEQQHALRERESMLAAIGDNLPHGGIFRVSLDAQGLRFMYVSQGIERQLGIRPESLY 493

Query: 494 RKP--FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
           +         +++  +++       L       ++     +    ++  L + + +    
Sbjct: 494 KDSSVLLARFDRSDRALLREACQRCLDDGTP--VDITVRYTHVSGRIHWLHLRMARHASD 551

Query: 552 SC---YSLTMHDISEWKQEKNKLSHAKKIAEK 580
                      D ++   +++ L   ++I   
Sbjct: 552 RACRILDGLAIDETQLVLQRDALREHERILTA 583


>gi|330972152|gb|EGH72218.1| PAS protein [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 595

 Score =  290 bits (743), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 88/427 (20%), Positives = 170/427 (39%), Gaps = 28/427 (6%)

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK--R 445
            + R      A         E    +T  P   A +      + GI  E +         
Sbjct: 193 IARRFGAPIEALAKAADRIGEGDYEVTL-PISSAAEMNLLTRRFGIMAEALRQHQATNVD 251

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           ++     +L ++L++  DG+ +I+R+G +   N    +  G+    +             
Sbjct: 252 ELLAGQQRLQAVLDSIDDGLLMIDRQGHLEHLNPVAQRQLGWDESRLGHSLGEALGRPEL 311

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISE 563
              ++  L         + L         E +LL+  +              + +HD++E
Sbjct: 312 DEQLHLVLRGGTLERAPEDLAIEI---DGESRLLTYSMTPVSHTKGHILGAVMVLHDVTE 368

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            +  +                +S+F+ R SHE+RTP+T  +  +  +  +R       R 
Sbjct: 369 QRAFE--------------RVRSEFVLRASHELRTPVTG-MHMAFGLLQERLHFAPESRE 413

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            +  N +      ++ ++NDLL+ S+ ++G   L   P S++  + EA +  +  A E+ 
Sbjct: 414 ADLLNTVTEEMQRLMQLINDLLNFSRYQNGLQKLKLAPCSIETLLQEAKARFEDQAQEQD 473

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
           I++       +PR+ AD   ++++  N+L NA+  TP  G I +       E  I+ V D
Sbjct: 474 IVLMLDMQEPMPRLHADQSQLERVLDNLLDNALRHTPPNGLIRLQ-ARRHGERAIISVED 532

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
            G G+   +  +  +PF Q+      +  G GL L L K +V  + G+  ++S P +GT 
Sbjct: 533 NGEGIAYGQQGRIFEPFVQV----GRKKGGAGLRLALCKEIVQLHGGRMGVYSRPGQGTQ 588

Query: 804 IEIIFPL 810
             +  PL
Sbjct: 589 FYMALPL 595



 Score = 45.4 bits (106), Expect = 0.039,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 69/241 (28%), Gaps = 9/241 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G+L+ ++    + +G    + +G  L +      +D       L+ R  T      
Sbjct: 274 IDRQGHLEHLNPVAQRQLGWDESR-LGHSLGEALGRPELDEQ---LHLVLRGGTLERAPE 329

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
              IE       +  +  P+        G     ++H          +  R +      H
Sbjct: 330 DLAIEIDGESRLLTYSMTPVSHTKGHILGA--VMVLHDVTEQRAFERV--RSEFVLRASH 385

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           E++   + +      +  +    P  R  + ++++TE    +   L  +       +   
Sbjct: 386 ELRTPVTGMHMAFGLLQERLHFAPESREADLLNTVTE-EMQRLMQLINDLLNFSRYQNGL 444

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
              +    +I       K  F                   P L A   + E +    +D 
Sbjct: 445 QKLKLAPCSIETLLQEAKARFEDQAQEQDIVLMLDMQEPMPRLHADQSQLERVLDNLLDN 504

Query: 329 C 329
            
Sbjct: 505 A 505


>gi|291287330|ref|YP_003504146.1| multi-sensor hybrid histidine kinase [Denitrovibrio acetiphilus DSM
           12809]
 gi|290884490|gb|ADD68190.1| multi-sensor hybrid histidine kinase [Denitrovibrio acetiphilus DSM
           12809]
          Length = 993

 Score =  290 bits (743), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 82/263 (31%), Positives = 130/263 (49%), Gaps = 13/263 (4%)

Query: 555 SLTMHDISEWKQEK--NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
                  +  K      +L      AE+ +  KS FLA +SHEIRTPL +I+GFS+++  
Sbjct: 352 VGVTIFNTNRKLLDQSEQLQKLAVDAEEANIAKSAFLANMSHEIRTPLNSIMGFSDLL-- 409

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
                  N    EYA  I +S   +L I+ND+LDISKIESGK+ L  E   L+  +   I
Sbjct: 410 --CASDINANDKEYALTISQSARSLLSIINDILDISKIESGKVELFKEEFDLNLMLDYVI 467

Query: 673 SLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
            ++ + A+EK I        NIP +++ D   ++Q+ +N+L NA+ FT  GG+I +S   
Sbjct: 468 KMISVRASEKDINFLFYCDTNIPAKLIGDSERIQQVLMNLLGNAVKFTEKGGEIRLSVFM 527

Query: 732 TSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
               +    V   V DTG+G++   +    +PF Q       +  GTGLGL +   ++  
Sbjct: 528 ADKADDTVDVRFEVHDTGIGISEAAVAHIFEPFHQADAGINRKYGGTGLGLTICNKILHI 587

Query: 788 NMGKFYIFSTPAKGTL--IEIIF 808
              +  ++S+   G+     + F
Sbjct: 588 MESEIRVYSSEGVGSTFDFTVSF 610


>gi|134045508|ref|YP_001096994.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus maripaludis C5]
 gi|132663133|gb|ABO34779.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus maripaludis C5]
          Length = 614

 Score =  290 bits (743), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 68/248 (27%), Positives = 137/248 (55%), Gaps = 4/248 (1%)

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            K++ ++L ++    ++  + KS+ L+ VSHE+RTPLT+I G+ +++K++  G L N + 
Sbjct: 370 LKKDADELKNSYDELKEVDNLKSELLSIVSHELRTPLTSIRGYVDLLKDETAGKL-NDKQ 428

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            E+   I  + + +  +++++LD+ K+E+  ++  F  +++   V E IS ++ +A+ K 
Sbjct: 429 HEFILIISENSDRLKRLIDNMLDLVKVENEVLDFKFNKLNIKNTVGEIISSLKYFADSKN 488

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
           I++          I  D   + Q+  N++ NAI F+ +  ++ +       E + L + D
Sbjct: 489 IILLEDVDE--VYIKGDKSKINQVLANLIENAIKFSKNQTKVTV-IGFEDKENLHLEITD 545

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
            G G+    LEK  + F QI +S +    G+GLGL + K +V+++ G  ++ S   KGT 
Sbjct: 546 QGPGIPKENLEKIFEKFYQIDSSSKREIGGSGLGLAVCKKIVESHGGSIWVESKVGKGTS 605

Query: 804 IEIIFPLY 811
           + I+ P+ 
Sbjct: 606 VHILLPIA 613


>gi|221210649|ref|ZP_03583629.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
           CGD1]
 gi|221169605|gb|EEE02072.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
           CGD1]
          Length = 1001

 Score =  290 bits (743), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 117/673 (17%), Positives = 215/673 (31%), Gaps = 65/673 (9%)

Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE 245
                    A  +RLD     L    +          D+   +    + R    +   T+
Sbjct: 96  ERTDPRATPAQLRRLDDAHGRLIVSGRAGLPSTAVLADLTRDRGAAAYSRYVALLFQQTD 155

Query: 246 YYA------------------HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287
             A                  H D +      P+              H +  +   ++ 
Sbjct: 156 MIAVSMPHTINAGLSAYLIGTHGDFIGIVGVQPVGRLARRLDAID--MHALIRSVEPRRG 213

Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV------------ 335
               L+         L  R+   L            +   + PI + V            
Sbjct: 214 IGVPLRTIDGRDDALLDTRDDTLLGRPVWRLSRPVRDASGQ-PIAWLVINTRAQVGTIMK 272

Query: 336 --YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393
             Y+       +    +         +                   A++ V         
Sbjct: 273 PDYADDAHALVDARGTVAVGAPVEAALVERALA---FARAPADVRAAVQRVGTRFVIGDR 329

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
           +  S  +    ++  + +    +P                       R   R      ++
Sbjct: 330 LPESDLVFVTTFSWRSIVEALAVPLGVTAGAALFAIAALWLAIVAFDRRALRPAYRRAIR 389

Query: 454 L-------CSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           L        +++     G+A+++  +G  + +N  +++         L K       +  
Sbjct: 390 LIESDALNRALIRTAPAGLALLSLADGDAIVSNETMARYERLASGAPLGKRLWRSYREQ- 448

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
                    +        T E        +   +   I+  +         T+ DI+  K
Sbjct: 449 --------RDASGYAKVVTCELPIDPDRADTPHVVANIMRTRYRGVDALLCTLTDITARK 500

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           Q + KL  A+  AE  +  KS FLA +SHEIRTPL AI+G  E++      P        
Sbjct: 501 QMEQKLHEARVAAESANKAKSTFLATMSHEIRTPLNAIVGNLELMARAPLAPTE----RR 556

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
             + I  S + +L I++D+LD+SK ES +M +   P  + + + +  +  +  A+ K + 
Sbjct: 557 RLDTIASSSDALLRIIDDVLDLSKAESNQMTIERIPFDVRDVLDDIAAFYRPLASAKGLE 616

Query: 686 IRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIS----TTHTSNEEVILR 740
           +R   A  +    + D   ++QI  N++ NAI FT  G  + I             V +R
Sbjct: 617 LRCRVAPELADGYVGDPVRLRQIMSNLVDNAIKFTERGS-VSIDAQRVVRSAGGARVEIR 675

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           + DTG+G+    L      + Q   S   R  GTGLGLPL + +     G   + S   +
Sbjct: 676 IADTGIGIPADSLPTLFDVYIQADASIYRRFGGTGLGLPLCRRIAMLMHGDLTVDSREGE 735

Query: 801 GTLIEIIFPLYDT 813
           GT + +  PL + 
Sbjct: 736 GTTMCVTLPLPEA 748


>gi|157144823|ref|YP_001452142.1| sensory histidine kinase AtoS [Citrobacter koseri ATCC BAA-895]
 gi|157082028|gb|ABV11706.1| hypothetical protein CKO_00550 [Citrobacter koseri ATCC BAA-895]
          Length = 593

 Score =  290 bits (743), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 88/380 (23%), Positives = 175/380 (46%), Gaps = 30/380 (7%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE- 502
            + +         I+E  +DG+  I+R+G + + N A   + GY + ++  +P++     
Sbjct: 239 AQTLRETKTLNDLIIENAADGVIAIDRQGNVTTMNPAAETITGYTLHELAGRPYSTLFAD 298

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTM 558
            +  S +   L           L +      ++ + + L +   ++  +        +  
Sbjct: 299 PHFSSPVLDTLENGTEH-----LAQEVSFPARD-RTIELSVTTSRIHNADGELIGALVMF 352

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            D++  K+ + +L+  +++A        + +A V+HE+R PLTAI G+ ++I+ Q   P+
Sbjct: 353 SDLTARKEAQRRLAQTERLAT-----LGELMAGVAHEVRNPLTAIRGYVQIIRQQINLPV 407

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
               + EY + + +  + +  ++  LLD S+    +    ++ VS++  + EA+ LVQ  
Sbjct: 408 ----HQEYLSVVLKEIDSINKVIQQLLDFSRPRQSQ----WQQVSINTLIEEALILVQTS 459

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738
             + RI   T F   +P I+AD   +KQ+ LN+L NA+    + G+I I T   +   + 
Sbjct: 460 GVQARINFNTEFNAALPTIVADRELLKQVLLNMLINAVQAIGARGEIRIRTWRYTTTHLA 519

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           + + D G G+     +K   PF     S      GTGLGL L++ +++A+ G  Y+ S P
Sbjct: 520 IAIEDNGCGIDVALQKKIFDPFFTTKAS------GTGLGLALSQRIINAHQGDIYVTSMP 573

Query: 799 AKGTLIEIIFPLYDTSHPHD 818
             G    +I P+       +
Sbjct: 574 GCGATFTLILPINPQETSSE 593



 Score = 46.6 bits (109), Expect = 0.019,   Method: Composition-based stats.
 Identities = 16/128 (12%), Positives = 38/128 (29%), Gaps = 5/128 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G +  ++       G    ++ G     +    H      + D L+       +  
Sbjct: 263 IDRQGNVTTMNPAAETITGYTLHELAGRPYSTLFADPHFSSP--VLDTLENGTEHLAQEV 320

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGF-RGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
            +P     + + +  +   I++ + E  G    F  +   +      A  +RL      +
Sbjct: 321 SFPARDRTIELSVTTS--RIHNADGELIGALVMFSDLTARKEAQRRLAQTERLATLGELM 378

Query: 208 HEIKKGHS 215
             +     
Sbjct: 379 AGVAHEVR 386


>gi|229167477|ref|ZP_04295215.1| hypothetical protein bcere0007_24400 [Bacillus cereus AH621]
 gi|228616039|gb|EEK73126.1| hypothetical protein bcere0007_24400 [Bacillus cereus AH621]
          Length = 614

 Score =  290 bits (743), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 87/501 (17%), Positives = 171/501 (34%), Gaps = 41/501 (8%)

Query: 314 YFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                E      +   P+    +  +G+    N    ++T Y + + I     L  L   
Sbjct: 126 LLSRKEEELHTILQNMPVMVDALDYNGDFVLWNRECEIVTGYTAEEIIGNPNALRLLYPD 185

Query: 373 PKLSDNNAIKPVM----LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
                    K +         +      +  + TI W+                      
Sbjct: 186 HNYRYQIQNKFLTHGKNFRDWEMRLTCKNGEIKTIMWSN-----------ISEQFPVTGF 234

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
               +  +    +  + +++ +  +L  I +A  D   +   +G I+         F  P
Sbjct: 235 SYWAVGVDITHLKAIEEQLKQQTSELELIFKALPDLCFLTEDDGTIIDYKAGSPTKFYVP 294

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            E  + K F   L           + ++        +E           +         L
Sbjct: 295 AEAFMGKKFYEILPSPVAQQFQEAIRQLKEEGKNVIVEYPLTI---NGSIDFFEARCLPL 351

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                  + + DI+E K+ +  L+ +  +A           A V+HE+R PLT I GF +
Sbjct: 352 LQDK-IMIIVRDITERKKAEELLNKSDTLA-----AIGQLAAGVAHEVRNPLTVIKGFIQ 405

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
                    +      +Y + +      +  I+ + L I+K +     ++ E  ++ +  
Sbjct: 406 ------LFQINKEDQEKYFDLMLSEIERIEAILQEFLSIAKTD----EINTEKKNIYQIF 455

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
              +SL+   A    I +     +    I      +KQ+ +NIL N+I     GG+I I 
Sbjct: 456 KNVVSLINTKAIMTNIQVELFTDSKEIIIECSENQLKQVFINILQNSIEAMLDGGKISIH 515

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                 + VI+ V D G+G+    +++  +PF         + +GTG+GL L+  +++ +
Sbjct: 516 IKEIHKKGVIISVIDEGIGIPEERIKRLGEPFY------STKEKGTGIGLMLSYKIIEGH 569

Query: 789 MGKFYIFSTPAKGTLIEIIFP 809
            G   I S    GT + I  P
Sbjct: 570 QGTISIMSEVGVGTTVTIYLP 590


>gi|199597242|ref|ZP_03210673.1| Signal transduction histidine kinase [Lactobacillus rhamnosus
           HN001]
 gi|199591758|gb|EDY99833.1| Signal transduction histidine kinase [Lactobacillus rhamnosus
           HN001]
          Length = 555

 Score =  290 bits (743), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 78/397 (19%), Positives = 167/397 (42%), Gaps = 30/397 (7%)

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476
           P     Q P  +    I     +    + K+ +       +++    G+ +I+    ++ 
Sbjct: 181 PVILPPQSPFTLVARRINALAAEQTHLREKVAVRQSSFDRLIDNLPLGVMLIDTNKDVIL 240

Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK-- 534
            N A+S+L G+     + +P   +L+      +   +      +     E   L + K  
Sbjct: 241 HNHAMSQLLGHQ----IPQPRHNYLDDVKTYALARMIEHTFRHEKTHHQELTVLATQKSV 296

Query: 535 EEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
           +  ++ L     +L       + ++D++  +Q +                + DF+  VSH
Sbjct: 297 DASVIPLNQGTSRLQ----VLVILYDVTYLRQVE--------------KMQLDFVGNVSH 338

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           E++TP+TAI GF+E + +            ++   I      +  ++ND+L +S+ ES +
Sbjct: 339 ELKTPVTAISGFAETLLSG--AKNDPATLDKFLKIIFDESKRLTQLINDILTLSRPESNQ 396

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714
                  V L + V +A+  +     +K+I +  + A ++ +++ D R + QI  N+L+N
Sbjct: 397 TV--QAQVPLKKLVDDALRNLAKVIKDKQIRVEVAIAPDL-QVVTDERKLTQIVRNLLNN 453

Query: 715 AIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           A+ +    G + I+        + L V DTG+G+   E  +  + F ++  ++     GT
Sbjct: 454 AVFYNRLAGHVTITAQVVE-GHLSLAVADTGIGIPETEQARIFERFYRVDKARSRHNGGT 512

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
           GLGL +   +V +  G+  + S    G+   +  P+ 
Sbjct: 513 GLGLAIVSELVKSMDGQVAVSSQVGVGSTFTVTLPIS 549


>gi|325168411|ref|YP_004280201.1| two-component sensor histidine kinase protein [Agrobacterium sp.
           H13-3]
 gi|325064134|gb|ADY67823.1| probable two-component sensor histidine kinase protein
           [Agrobacterium sp. H13-3]
          Length = 632

 Score =  290 bits (743), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 76/586 (12%), Positives = 190/586 (32%), Gaps = 44/586 (7%)

Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
             D      ++  + + +++   +      +              +       +      
Sbjct: 56  PDDLEHLATEWRNIMTAKTAKEVEGRIKRADGVFRWCSLRQKPRHDPKGNVVRWYGVVLD 115

Query: 309 PS-----------LSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKS 356
                          A     E      +D  P+  +     G+  + N S+L       
Sbjct: 116 IEDRKQAEDALKETEAALAASEQNLRLIIDSLPVLVWSARPDGSADFVNKSWLDYAGLPP 175

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
              +E   G   L        ++  + V +++ D      +     I+          F 
Sbjct: 176 ERILE--WGFLDLY-----HPDDIAEMVEIWKRDLENSDHTQLKGRIRGADGTYRWFYFS 228

Query: 417 PFEKANQFPENMPQNGIEPEDV-------DTRINKRKMEIEVMQLCSILEATSDGIAIIN 469
             +  +     +   G+  +           R ++  +     +L  ++           
Sbjct: 229 GRKLTDATGT-VRWFGVNIDIENLQYAEDALRYSETALRESEQKLNLVINTIPAMAWSCT 287

Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
            +G +   N+      G  +ED+    F      +    M     EI++      ++   
Sbjct: 288 PDGQLEYWNKIFIDFVGLTIEDLQGYGFYRVFHPDDVERMRTSWEEIVATKRPDPVDARI 347

Query: 530 LGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSH--K 585
             S  E +  +LR         +   +   + DI + ++ +  L  ++      +     
Sbjct: 348 RRSDGEYRWFNLRQNPLLDSEGNVVRWYGVVVDIEDRRRAEESLRQSQADLAHVTRLTTI 407

Query: 586 SDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
            +    ++HEI  PL AI+  +   ++  + G     +    A  + + G+   +IV  +
Sbjct: 408 GELAVSIAHEINQPLMAIVTNAGTCLRWLQDGHTDLEQARRAAERVVQDGHRAGEIVASI 467

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704
               +  + +  L  +    + A+ E + L+Q     + + + T        +L D   +
Sbjct: 468 ----RAMAQRTPLRMKKTDFNTALREVLFLLQEELQSRGLQVVTDITTGPVHVLGDCTQL 523

Query: 705 KQIALNILSNAIHFTPSG--GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
           +Q+ LN++ N+     S     I +     +  ++ + V DTG G++  +L++  + F  
Sbjct: 524 QQVLLNLIMNSAEAMHSHDSAVITVRCVKRTGGDIEVSVSDTGHGISPDQLDRIFEAFYT 583

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
             +       G G+GL + +++V+A+ G+ +  +   +G       
Sbjct: 584 TKSD------GIGMGLSICRSIVEAHGGRIWATNNHPRGASFTFTL 623



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 52/538 (9%), Positives = 126/538 (23%), Gaps = 43/538 (7%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK 146
           W+  + G L   ++   + +G     + G     +     ++        +    T    
Sbjct: 19  WSTTSDGMLDFANQHFLEYVGLSLADIAGENFYRLFHPDDLEHLATEWRNIMTAKTAKEV 78

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP-------RALGKR 199
                     ++    L   P +         R +G+V                 A    
Sbjct: 79  EGRIKRA-DGVFRWCSLRQKPRHDPKGNVV--RWYGVVLDIEDRKQAEDALKETEAALAA 135

Query: 200 LDKKFSHLHEIKKGHSSVEKEKY----DIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255
            ++    + +         +          S          +       + Y   D    
Sbjct: 136 SEQNLRLIIDSLPVLVWSARPDGSADFVNKSWLDYAGLPPERILEWGFLDLYHPDDIAEM 195

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF--------EYLSHRN 307
            E +            +      +            L + +            E L +  
Sbjct: 196 VEIWKRDLENSDHTQLKGRIRGADGTYRWFYFSGRKLTDATGTVRWFGVNIDIENLQYAE 255

Query: 308 HPS--LSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAG 364
                      E E      ++  P   +  +  G L Y N  F+       ++D++  G
Sbjct: 256 DALRYSETALRESEQKLNLVINTIPAMAWSCTPDGQLEYWNKIFIDFVGLT-IEDLQGYG 314

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
                          + + ++  +         AR   I+ +               +  
Sbjct: 315 FYRVFHPDDVERMRTSWEEIVATKR---PDPVDAR---IRRSDGEYRWFNLRQNPLLDSE 368

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
              +   G+  +  D R  +  +      L  +   T+ G   ++    I   N+ +  +
Sbjct: 369 GNVVRWYGVVVDIEDRRRAEESLRQSQADLAHVTRLTTIGELAVSIAHEI---NQPLMAI 425

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL-----RQTLEKITLGSTKEEKLL 539
                  +          +         + +           R   ++  L   K +   
Sbjct: 426 VTNAGTCLRWLQDGHTDLEQARRAAERVVQDGHRAGEIVASIRAMAQRTPLRMKKTDFNT 485

Query: 540 SLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
           +LR ++  L     S     + DI+            +      +   +   A  SH+
Sbjct: 486 ALREVLFLLQEELQSRGLQVVTDIT-TGPVHVLGDCTQLQQVLLNLIMNSAEAMHSHD 542



 Score = 75.4 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/362 (7%), Positives = 75/362 (20%), Gaps = 29/362 (8%)

Query: 51  QSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYA 110
           +     ++    +      SE           V   W+    G    +++      G   
Sbjct: 117 EDRKQAEDALKETEAALAASEQNLRLIIDSLPV-LVWSARPDGSADFVNKSWLDYAGLPP 175

Query: 111 FKMIGMRLCDVSDILHIDPNNHIGDL-LKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIY 169
            +++     D+     I     I    L+  +    K  +   +GT  Y     +   + 
Sbjct: 176 ERILEWGFLDLYHPDDIAEMVEIWKRDLENSDHTQLKGRIRGADGT--YRWFYFSGRKLT 233

Query: 170 SRNREFSGFRGFGIVHVN-------RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKY 222
                    R FG+                     +  ++K + +       +       
Sbjct: 234 DATGTV---RWFGVNIDIENLQYAEDALRYSETALRESEQKLNLVINTIPAMAWSCTPDG 290

Query: 223 DIFSQQ----SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTI 278
            +                  +       +   D       +  + + +   P        
Sbjct: 291 QLEYWNKIFIDFVGLTIEDLQGYGFYRVFHPDDVERMRTSWEEIVATKRPDPVDARIRRS 350

Query: 279 NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE---------TVDKC 329
           +            L ++      +             +E    +           T+ + 
Sbjct: 351 DGEYRWFNLRQNPLLDSEGNVVRWYGVVVDIEDRRRAEESLRQSQADLAHVTRLTTIGEL 410

Query: 330 PIPFF--VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
            +     +         N    L        D+E A   +  +          +  +   
Sbjct: 411 AVSIAHEINQPLMAIVTNAGTCLRWLQDGHTDLEQARRAAERVVQDGHRAGEIVASIRAM 470

Query: 388 RS 389
             
Sbjct: 471 AQ 472



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 15/132 (11%), Positives = 38/132 (28%), Gaps = 6/132 (4%)

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           +I++           +G++   N+   +  G  + DI  + F      +    +      
Sbjct: 9   AIIDMIPAMAWSTTSDGMLDFANQHFLEYVGLSLADIAGENFYRLFHPDDLEHLATEWRN 68

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKL 571
           I++    +  E        +       +  K           +   + DI + KQ ++ L
Sbjct: 69  IMTAKTAK--EVEGRIKRADGVFRWCSLRQKPRHDPKGNVVRWYGVVLDIEDRKQAEDAL 126

Query: 572 SHAKKIAEKESS 583
              +        
Sbjct: 127 KETEAALAASEQ 138


>gi|229095613|ref|ZP_04226594.1| hypothetical protein bcere0020_8660 [Bacillus cereus Rock3-29]
 gi|228687745|gb|EEL41642.1| hypothetical protein bcere0020_8660 [Bacillus cereus Rock3-29]
          Length = 883

 Score =  290 bits (743), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 79/338 (23%), Positives = 150/338 (44%), Gaps = 18/338 (5%)

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            +D++++            +    +  +L      T E        + +   L++  ++L
Sbjct: 382 HQDLIQQTIDNLGLTIHSIIGRMRIQTLLHESQAMTEELQVQSEELQTQAEELQMQAEEL 441

Query: 549 PFSSCYSLTMHDISEWKQEK-----NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
             ++    +  + +E K        ++L        + S +KS+FLA +SHE+RTPL +I
Sbjct: 442 RTTNEQLESRTEEAEQKTADLQITKSELEEKASELLRSSKYKSEFLANMSHELRTPLNSI 501

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +  SE+++      L +    E A  I  SG  +L ++ND+LD+SK+E+GK+++ FE  +
Sbjct: 502 LLLSEMLRENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDIIFEATN 560

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSG 722
           + +  +         A +K +      ++ IP +   D + ++QI  N+LSNA  FT  G
Sbjct: 561 ISDMAANMHQNFLHIAAQKNVEFTIEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKG 620

Query: 723 GQ------IIISTTHTS-----NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
                   I  S           + +I+ V+DTG+G+   + +   + F Q   +   + 
Sbjct: 621 SVSLHFDSIETSNLSHDMQSISKDWIIISVKDTGIGIAKEQHQLIFEAFQQADGATIRKY 680

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            GTGLGL + K       G   + S   +G+   +  P
Sbjct: 681 GGTGLGLSICKEFARLLGGWITLESNVGEGSTFTVYIP 718


>gi|77919545|ref|YP_357360.1| two component hybrid histidine kinase/sensor response regulator
           [Pelobacter carbinolicus DSM 2380]
 gi|77545628|gb|ABA89190.1| two component hybrid histidine kinase/sensor response regulator
           [Pelobacter carbinolicus DSM 2380]
          Length = 833

 Score =  290 bits (743), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 77/251 (30%), Positives = 129/251 (51%), Gaps = 10/251 (3%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E ++  +KL+ A++ AE  +  KS FLA +SHEIRTP+  +IG +E++         +  
Sbjct: 278 ELQKTVDKLAQARQAAETANHAKSRFLANMSHEIRTPMIGVIGVAELLSGTPL----SDH 333

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             E A+ I  SG  +L ++ND+LD SKIE+G++ +   P +L + V E +SL+   A +K
Sbjct: 334 QRELAHMIHSSGESLLKVLNDILDFSKIEAGRLVVERVPFNLVDVVEEPLSLIAKNAQDK 393

Query: 683 RILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EV 737
           ++ +        P  +L D   ++QI  N+L NA+ FT  G +I +             +
Sbjct: 394 KVELICRIQPGTPVSLLGDPARLRQIVFNLLGNAVKFTSEG-EISVRIGCRDENCASASI 452

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
            L VRDTG+G+     +     F Q  +S      GTGLGL + + ++D   G  ++ S 
Sbjct: 453 FLEVRDTGIGIDREAQQAIFDAFSQADSSTTRHYGGTGLGLAIVRQLLDLMRGHIHLESE 512

Query: 798 PAKGTLIEIIF 808
             +G++     
Sbjct: 513 LGQGSVFTCTI 523


>gi|119944999|ref|YP_942679.1| sensor histidine kinase PAS domain-containing protein [Psychromonas
           ingrahamii 37]
 gi|119863603|gb|ABM03080.1| PAS/PAC sensor signal transduction histidine kinase [Psychromonas
           ingrahamii 37]
          Length = 506

 Score =  290 bits (743), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 101/517 (19%), Positives = 188/517 (36%), Gaps = 28/517 (5%)

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKS 356
            S   ++ +     +    + + L    ++  P     + S   +  AN +FL  ++   
Sbjct: 11  ASNHSVAKQPASESTGDNVQYQQLYDMLLNATPSSILLIDSKLRITSANRNFLTRSQRTL 70

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
              I     L+ +     L   +  + +       T  A+  R  T +          + 
Sbjct: 71  SATIGCR--LTEVFPMVILERTDIKQQI--LEVFNTHKASVGRRMTYRAPGVPFKTYYYR 126

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476
                +          +  +  D       M      L SI+E+ SD +  ++ EG IL+
Sbjct: 127 ILPVESSEQCE-QVMLLMEDVTDQIRLSEDMRRMESHLGSIVESASDLMLSLDTEGRILT 185

Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
            N A  KL G+   ++  K F  F + +    +      I       +L       + E 
Sbjct: 186 WNLAAEKLSGFTFLNVKGKLFFEFFKASEHLEIKTLFINICIH--VYSLNAELELISGEG 243

Query: 537 KLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
             + +  +   +               D++E ++ + +L  ++K+A             +
Sbjct: 244 TEIPVAWVFSPMKDDDAKTVGIVAVGRDLTEQRKLEVELRQSQKLA-----ALGVMAGGI 298

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           +HEIR PL      ++ +  +    L      E A  I  S      I+ +LL  S+  S
Sbjct: 299 AHEIRNPLAVCSSAAQFLMEE---GLPLEFRTECAEKIQVSLEKASCIIENLLRFSRPSS 355

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712
            +   +  PV LD  + E I L+   A   +I I          +      ++Q+ +N  
Sbjct: 356 EQ---NMVPVDLDTVLCETIMLIANQAKVYKIEIVYQPIGKCGSVSGIFTLLQQVFMNFF 412

Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
            NAI+  P GG++ I      N+E  + +RDTG G+    L+    PF     +    G+
Sbjct: 413 LNAINAMPHGGKLSIILE-QQNDEARICIRDTGTGILEGALDNIFDPFHTSSPA----GK 467

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           G GLGL L  ++V  + G   + S   KG+   ++ P
Sbjct: 468 GVGLGLSLCYSIVKQHRGSISVDSMLGKGSTFTVLLP 504


>gi|159901161|ref|YP_001547408.1| GAF sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159894200|gb|ABX07280.1| GAF sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 533

 Score =  290 bits (742), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 74/370 (20%), Positives = 141/370 (38%), Gaps = 32/370 (8%)

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
           E  +      A  +G+ +++ +G I   N      F                       +
Sbjct: 190 ERRKFEGAFTAMEEGLILVDGDGRIHFVNPQALAFFAVTPPVPEHLN-------ELSQQV 242

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN 569
                E          E +   +   +  + +  I         +++ +HDI+  K+   
Sbjct: 243 LGLFKEAQQTGDSVRAEIVLEQNPTTDLAIHIAYIPIFSEQEDWWTIVLHDITRLKEY-- 300

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
                          K+ F+A  SHE+RTPL  I  ++  +  Q       P+   Y   
Sbjct: 301 ------------DRLKTQFVANASHELRTPLANIKLYA-RLAQQVKAKTKLPQ---YLET 344

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT- 688
           I      +  IV DLL +++++SG M+   E V + E +       +  A  +   +   
Sbjct: 345 IASEAGRLEAIVEDLLTLTRLDSGLMHSSPEWVDIIELLRNLAQTYRPLAEAREQRLIFQ 404

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST-THTSNEEV--ILRVRDTG 745
              +N+P++        ++ +N+LSNA+ FTP+GG + +S    T   +   ++ V DTG
Sbjct: 405 ECTSNLPKLWLAPDQFMRVVVNLLSNALKFTPTGGTVTLSVDRQTQAGQAGTLITVADTG 464

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
            G+     ++  + F +  N       G+GLGL + + ++    G   + ST  +G+   
Sbjct: 465 PGIAPEHQQRLFERFYRGSNPT---ESGSGLGLAIVRELLALMGGTISVASTVGQGSQFT 521

Query: 806 IIFPLYDTSH 815
              PL   +H
Sbjct: 522 CWLPLEQHTH 531


>gi|46581083|ref|YP_011891.1| sensory box histidine kinase/response regulator [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|46450504|gb|AAS97151.1| sensory box histidine kinase/response regulator [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|311234760|gb|ADP87614.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris RCH1]
          Length = 1005

 Score =  290 bits (742), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 123/825 (14%), Positives = 246/825 (29%), Gaps = 123/825 (14%)

Query: 85  FTWNIDAH---GYLKEISEELPKTIG-------------NYAFKMIGMRLCDVSDILHID 128
           F W +        L +++      +                +  ++G  L  + +     
Sbjct: 56  FVWRVARDVGASRLIDMNPLAKAYLENVPRNGDDGSPDLPESPDLLGSLLPWLVESPF-- 113

Query: 129 PNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNR 188
               +  +     T           G   +       LP+              I     
Sbjct: 114 -GEALRRVHAEGGTLEIPALRHGAAGGGRFWRCIFCRLPLGDV---------IAISEDIT 163

Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS------- 241
              +  A     ++ +  L E           +  +              ++        
Sbjct: 164 AAQETGAALVTSERGYRTLVENIPDIVVRFDARGRLLFANPALRRFVRSKRLPSGHVTGQ 223

Query: 242 SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301
            L +  A   ++ +  +  + + E      +E           +         +  ++  
Sbjct: 224 PLGQQPAMLRELRERVQLAMSSGEVQRAELEERTRQGRRFFEWR--IVPEPAPDGGDATV 281

Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG------NLFYANPSFLLLTKYK 355
               R+  ++    ++   L    +    +   +               NP+F  +T   
Sbjct: 282 LCIGRDVSAMRRATEDYRALFNGMLSAFALHEIICDGAGVPVDYRFLAVNPAFERMTGLL 341

Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI-----QWNRENS 410
           + + +        +L   +         V L     T  A +  L            E  
Sbjct: 342 ASEMVGRT--ARDVLPGLESEWLQRYGQVALTGVPVTFEAFNRDLGKYFKVSAYRPAERQ 399

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI----LEATSDG-I 465
            A  F       +  E    N      +      ++ E  V +        L     G +
Sbjct: 400 FACMFHDVTDRVRGREERRSNARRMAALQRIFRMKEPEEVVARYALTQSMQLTGARVGRV 459

Query: 466 AIINREGI-ILSTNRAVSKLFGYPVED--------------------------------- 491
            + + E   I         LFG                                      
Sbjct: 460 VLHDPETRVIRHIVDHGDPLFGTEGWQWASVAHGGAGGDDTDGGAAGGRGPDEPEGIAGP 519

Query: 492 --ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
             +  +P    + +   + ++  +T   +      L               L +   +L 
Sbjct: 520 RRVPPQPDAGHVAEPDRARLDDLMTRAAAG--MGPLASELTHGRHGPHARHLAV-PVRLD 576

Query: 550 FSSCYSLTMHD----------------------ISEWKQEKNKLSHAKKIAEKESSHKSD 587
                   + D                        E ++  ++LS AK+ AE  +  KS+
Sbjct: 577 GRLGAVAVLLDKPTPFTRADIKQLDLLMRGMLEHLERRRSLHRLSLAKEHAESANRAKSE 636

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           FLA +SHE+RTPL  ++G  ++++        +    E  +    SG  +L +++D+LD+
Sbjct: 637 FLANMSHELRTPLNGMLGMLQLLEAGDL----DRDQNELVHIALDSGRTLLRVLSDILDL 692

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707
           S+IE+G+M L  +  S +EAV +   +    A  + + +R         +  D   ++QI
Sbjct: 693 SRIEAGRMELRHDRFSPEEAVRQVYDMFAQDARIRGLRLRWRCDELPCEVWGDGTRLRQI 752

Query: 708 ALNILSNAIHFTPSGGQ-IIISTTHTSNEEVI--LRVRDTGVGMTNYELEKAMKPFGQIP 764
             N+L NA+ FT  G   + +     + E V     V DTG+G+ +  L    +PF Q+ 
Sbjct: 753 LFNLLGNAMKFTHEGTVGVEVCAVRRTEESVRLLFSVSDTGIGIPHDRLMSIFEPFTQLD 812

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            S   R  GTGLGL + + +V    G   + S   +GT + +  P
Sbjct: 813 GSTTRRYSGTGLGLGIVRRLVHLMGGGLNVESALGEGTAVHVCLP 857



 Score = 84.7 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 36/303 (11%), Positives = 74/303 (24%), Gaps = 29/303 (9%)

Query: 287 QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS------HGN 340
                +Q  S           H S          L     ++ P+  FV+          
Sbjct: 9   HRARMVQAESTIRTLRRERVLHDSQVEQLRRTGALYRSVFERIPVMVFVWRVARDVGASR 68

Query: 341 LFYANPSFLLLT------KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394
           L   NP                  D+  +  L   L  P L ++   + +    ++   +
Sbjct: 69  LIDMNPLAKAYLENVPRNGDDGSPDLPESPDLLGSLL-PWLVESPFGEALRRVHAEGGTL 127

Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
              A L              F      +          I  +    +     +       
Sbjct: 128 EIPA-LRHGAAGGGRFWRCIFCRLPLGD-------VIAISEDITAAQETGAALVTSERGY 179

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLF---GYPVEDILRKPFTVFLEQNTPSVMNH 511
            +++E   D +   +  G +L  N A+ +       P   +  +P     +      +  
Sbjct: 180 RTLVENIPDIVVRFDARGRLLFANPALRRFVRSKRLPSGHVTGQPLGQ--QPAMLRELRE 237

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKN 569
            +   +S    Q  E          +    RI+ +  P            D+S  ++   
Sbjct: 238 RVQLAMSSGEVQRAELEERTRQG-RRFFEWRIVPEPAPDGGDATVLCIGRDVSAMRRATE 296

Query: 570 KLS 572
              
Sbjct: 297 DYR 299


>gi|291613628|ref|YP_003523785.1| multi-sensor hybrid histidine kinase [Sideroxydans lithotrophicus
           ES-1]
 gi|291583740|gb|ADE11398.1| multi-sensor hybrid histidine kinase [Sideroxydans lithotrophicus
           ES-1]
          Length = 908

 Score =  290 bits (742), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 89/333 (26%), Positives = 155/333 (46%), Gaps = 11/333 (3%)

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
           R    L      D   K F   + +          +  +   +   +  I         +
Sbjct: 152 RNAYSLSAVSYRDAAEKEFQETIHKAIRRSDRAQGSGAIIGSVMLFVIAILTLLVNRGIV 211

Query: 539 LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
           +  R++  +        L   ++ +  Q+      A+  AE  S  K +FLA +SHE+RT
Sbjct: 212 VLERVVENRNKM---LLLVNSELEQEIQKLKSAEEARSHAEAASHIKDEFLANMSHELRT 268

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
           P+ A+IG S +          + +  +Y   I  S   +L I+ND+LD+SKIE+GKM L 
Sbjct: 269 PMNAVIGLSHLCLQTEL----SDKQQDYLQKIHSSAKSLLGILNDILDVSKIEAGKMELD 324

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIH 717
                LDE +    +++   ++EK + +    A ++P +L  D   + Q+ +N+  NA+ 
Sbjct: 325 RIAFELDEVLGNLSTILWAKSHEKNLELLLETAPDVPSVLVGDPLRLGQVLINLAGNAVK 384

Query: 718 FTPSGGQII-ISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           FT  G  ++ I       ++V+LR  V+DTG+GM+  E++K  +PF Q   S   +  GT
Sbjct: 385 FTAKGEVVVSIDLEKEEGDQVVLRFAVKDTGIGMSQSEIDKLFRPFTQADTSITRKFGGT 444

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           GLGL ++K +++   GK ++ STP  G+     
Sbjct: 445 GLGLTISKRLIEMMGGKIWVESTPGSGSKFIFT 477


>gi|253699384|ref|YP_003020573.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21]
 gi|251774234|gb|ACT16815.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21]
          Length = 1193

 Score =  290 bits (742), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 90/554 (16%), Positives = 187/554 (33%), Gaps = 52/554 (9%)

Query: 283  YTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLF 342
             T +++   LQ  +    + +  R         ++        +   PI   +     + 
Sbjct: 524  ETIEEHLTELQLLNDSLEQRVQERTQQVERLASEQ-----RTILTTMPIGACLLVDRKIR 578

Query: 343  YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT 402
             AN +F  +T Y+    +   G  +  L     S            +     +A   L  
Sbjct: 579  MANQAFDKITGYEPGKTL---GMDTAQLHPDLQSYQQFWDAASSATAKGGIHSADMEL-- 633

Query: 403  IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
             +    + +    +        PE      +  +  + +  + ++         + E  +
Sbjct: 634  -RRKDGSLIWCNLVGQMVNPTAPEE-GFIWMVQDISERKTMESQLRASETHYRLLTEDVA 691

Query: 463  DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522
            D +  ++        + A  +L GY  +++L             + +   +         
Sbjct: 692  DVVWKLDAGYRFTYISPADERLRGYRADEVLGHTILEQTTSEWHAAITEKMRPGEDARET 751

Query: 523  QTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIA 578
              L        K+ +L+   I       +      Y     DI++ KQ        + + 
Sbjct: 752  SPL--EIQQRCKDGQLIWTEIFFTADHDADGAITGYHGITRDITQRKQAVE--LEQQLLH 807

Query: 579  EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
             ++          ++H+    L AIIG ++ +     G        E    I  + +   
Sbjct: 808  AQKLESLGVLAGGLAHDFNNILMAIIGNAD-LAQIHLGTGSPA--AENLQRIQNAASRAA 864

Query: 639  DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
            D+ + +L  S    GK     E + L+  + + + L+++  ++K   ++ +    +P I+
Sbjct: 865  DLTSQMLAYS----GKGRFVVERIDLNSLLDDMLHLLEVSISKK-AALKFNLHRPLPHIV 919

Query: 699  ADLRSVKQIALNILSNAIHFTPSG-GQIIISTTH--------------TSNEE---VILR 740
            AD   ++Q+ +N++ NA        G+I IST                    E   V L 
Sbjct: 920  ADATQIRQVVMNLVINASEAIGDNSGEITISTGCSQCVEECRRGRKVSRDQGERPCVYLV 979

Query: 741  VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
            + DTG GM +  + K   PF         +  G GLG+   + +V  + G   I S P +
Sbjct: 980  IADTGCGMGSETVAKIFDPFFTT------KFTGRGLGMAAVQGIVKGHKGTVKISSEPGR 1033

Query: 801  GTLIEIIFPLYDTS 814
            GT   I FP+ + +
Sbjct: 1034 GTTFTICFPVAEAT 1047



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 16/119 (13%), Positives = 40/119 (33%), Gaps = 11/119 (9%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK----RQN 141
            W +DA      IS    +  G  A +++G  + + +       +  I + ++     + 
Sbjct: 694 VWKLDAGYRFTYISPADERLRGYRADEVLGHTILEQTTSEW---HAAITEKMRPGEDARE 750

Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
           T   +      +G    +  ++     +  +   +G+ G  I            L ++L
Sbjct: 751 TSPLEIQQRCKDG--QLIWTEIFFTADHDADGAITGYHG--ITRDITQRKQAVELEQQL 805



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/384 (10%), Positives = 95/384 (24%), Gaps = 27/384 (7%)

Query: 94  YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN---NHIGDLLKRQNTWYGKTTLW 150
            ++  ++   K  G    K +GM    +            +       +         L 
Sbjct: 576 KIRMANQAFDKITGYEPGKTLGMDTAQL-HPDLQSYQQFWDAASSATAKGGIHSADMELR 634

Query: 151 PIEGTNLYV-PIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
             +G+ ++   +     P               +V          +  +  +  +  L E
Sbjct: 635 RKDGSLIWCNLVGQMVNPTAPEEGFIW------MVQDISERKTMESQLRASETHYRLLTE 688

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSS---LTEYYAHKDDVLKTEKYPLLTS 264
                       Y           LR    ++V     L +  +     +  +  P   +
Sbjct: 689 DVADVVWKLDAGYRFTYISPADERLRGYRADEVLGHTILEQTTSEWHAAITEKMRPGEDA 748

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
            E+S P +      +      + +F    +       Y       +      E E     
Sbjct: 749 RETS-PLEIQQRCKDGQLIWTEIFFTADHDADGAITGYHGITRDITQRKQAVELEQQLLH 807

Query: 325 TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST-----LLDAPKLSDNN 379
                 +       G     N   + +     +  I +  G         +        +
Sbjct: 808 AQKLESLGVLA--GGLAHDFNNILMAIIGNADLAQIHLGTGSPAAENLQRIQNAASRAAD 865

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
               ++ Y      +     L+++  +    L    I  + A +F  + P   I  +   
Sbjct: 866 LTSQMLAYSGKGRFVVERIDLNSL-LDDMLHLLEVSISKKAALKFNLHRPLPHIVADATQ 924

Query: 440 TRINKRKMEIEVMQLCSILEATSD 463
            R     + I   +  +I + + +
Sbjct: 925 IRQVVMNLVINASE--AIGDNSGE 946


>gi|332532904|ref|ZP_08408776.1| putative two-component hybrid sensor and regulator [Pseudoalteromonas
            haloplanktis ANT/505]
 gi|332037570|gb|EGI74022.1| putative two-component hybrid sensor and regulator [Pseudoalteromonas
            haloplanktis ANT/505]
          Length = 1587

 Score =  290 bits (742), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 112/795 (14%), Positives = 251/795 (31%), Gaps = 86/795 (10%)

Query: 87   WNIDAHGYLKEISEELPKTIGNYAFKM---IGMRLCDVSDILHID-PNNHIGDLLKRQ-N 141
            W ID +      +    + IG    ++           +    +   N  + +    + +
Sbjct: 512  WYIDTNK--VTFNNRWAEIIGYKLSEIEPCTINTWYTYAHSDDLVISNKKLQEHFAGETD 569

Query: 142  TWYGKTTLWPIEGTNLYVPIDLAALPI-YSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
             +  +  +    G   ++ +   A  + ++ +      R  G               +  
Sbjct: 570  YFVSEARMKHKNGH--WIWVLDTAKVVEWNTDGSPK--RMIGTHLDISERKSTELELQGS 625

Query: 201  DKKFSHLHEIKKGH----SSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA-----HKD 251
              +F+ L     G        EK      S+Q+        +++               D
Sbjct: 626  RDRFASLVSNIPGIIYRCRFDEKLSMLYMSEQASEITGYSPDELIHDEPPSFFDLICEDD 685

Query: 252  DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
                 ++     S + S   +      +   +   +    +  +              + 
Sbjct: 686  SKKIKDEILRCVSAKQSWSVEYRITARDGTLHWVNEKGQAIYADDGSILYLDGFILDITE 745

Query: 312  SAYFDEGENLTPETVDKC----PIPFFVYSHGNL-FYANPSFLLLTKYKSVDDIEIAGGL 366
                    N     ++       I  +         Y +    ++  ++  +  E +   
Sbjct: 746  RYNTQLKINRQQSLLESMSKQGQIGAWEMDLDAHTLYWSDEVKVI--HEVPEGFEPSIDT 803

Query: 367  STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
            +     P +  +          +     +    + T         +M     +       
Sbjct: 804  AINFYKPGIHRDTISTLFECAVTLGESWSVELIILTYSGQERWVKSMGQAELKDGKCVRV 863

Query: 427  NMPQNGIEPEDVDTRINKRKME-------------------IEVMQLC-----SILEATS 462
                  I+        +++                       +V +L       +L    
Sbjct: 864  FGSFQSIDAHKRLELESEKANRYNKNLAALTVAPEVQNSDVEQVKKLAVKSMCEVLNVAR 923

Query: 463  DGIAIINREGII-----LSTN-------RAVSKLFGYPV--EDILRKPFTVFLEQNTPSV 508
              + I N +  +     L  N        A+     YP     I +       +  T S 
Sbjct: 924  ASVWIFNEKRDVMTCHSLYINGQGFVDTDAILTAKDYPAYFNAIYKHNLVAIDDVYTHSA 983

Query: 509  MNHYLTEILSL-DLRQTLEKITLGSTKEEKLL---SLRIIIKKLPFSSCYSLTM------ 558
               ++   ++  +++  L+ +         +L   ++            Y  ++      
Sbjct: 984  TVDFIEAYVTPLNIKSMLDAVIATGDGNLGILCAETVGEHHNWTQSEETYLRSLATLVGS 1043

Query: 559  HDISE-WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
              +S+  K    +L  A   AE  +  KS FLA +SHEIRTP+  ++G  E+++ +    
Sbjct: 1044 TLVSQKRKVISEELKVALVKAEDAAIAKSQFLATMSHEIRTPMNGVLGMLELVQLESLSK 1103

Query: 618  LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
                +     +   +S + +L ++ND+LD SK E+GK+ L     +  + + E  +    
Sbjct: 1104 PIETK----VDIAKKSAHSLLGVINDILDFSKAEAGKIELEEINFNGRDLIGEVAAAQAF 1159

Query: 678  YANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT---S 733
             A +K I I        P ++  D   ++Q+  N+LSNA+ FT  G ++++S        
Sbjct: 1160 TAQDKGIEIILDLVALEPSQLCGDPGRIRQVITNLLSNAVKFTSQG-EVVVSAKINKVAQ 1218

Query: 734  NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
              E ++ ++D+G+G++  + E+   PF Q+  S      G+GLGL + K + +   G   
Sbjct: 1219 GLEFVVSIKDSGIGISLEKQEQLFTPFSQVDASTTREYGGSGLGLAICKQLCELMGGAIS 1278

Query: 794  IFSTPAKGTLIEIIF 808
            + S   KG+      
Sbjct: 1279 LTSEAGKGSTFTATI 1293



 Score = 98.2 bits (243), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 32/294 (10%), Positives = 77/294 (26%), Gaps = 25/294 (8%)

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
              +L     +         +   +      HG + + N  F  ++ Y   + I      
Sbjct: 359 QRSALQIALKQLAEQKSALDEHAIVAV-TDLHGTITFVNKKFCEISGYDEHELIGQ---- 413

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
           +  L      +    K +                            +        +   +
Sbjct: 414 NHRLLNSGKHEKAFFKDMYKTLKRGDIWNGQICNKAKH---GGIYWVDTTIAPFLDGNGK 470

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
                 I  +    ++ + ++E    QL  ++++T+ GI     +   ++ N   +++ G
Sbjct: 471 PQNYIAIRTDITALKLQELELEQHKTQLQLVIDSTAVGIWDWYIDTNKVTFNNRWAEIIG 530

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL--DLRQTLEKITLGSTKEEKLLSLRII 544
           Y + +I       +        +     ++                   K    + +   
Sbjct: 531 YKLSEIEPCTINTWYTYAHSDDLVISNKKLQEHFAGETDYFVSEARMKHKNGHWIWVLDT 590

Query: 545 IKKLP-----FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
            K +             T  DISE K  + +L             +  F + VS
Sbjct: 591 AKVVEWNTDGSPKRMIGTHLDISERKSTELELQG----------SRDRFASLVS 634



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 59/513 (11%), Positives = 143/513 (27%), Gaps = 38/513 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQNTWYGKT 147
            D HG +  ++++  +  G    ++IG     ++   H           LKR + W G+ 
Sbjct: 386 TDLHGTITFVNKKFCEISGYDEHELIGQNHRLLNSGKHEKAFFKDMYKTLKRGDIWNGQI 445

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN-DPRALGKRLDKKFSH 206
                 G   +V   +A  P    N +   +    I             L +   +    
Sbjct: 446 CNKAKHGGIYWVDTTIA--PFLDGNGKPQNY--IAIRTDITALKLQELELEQHKTQLQLV 501

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHL-----RMKNKVSSLTEYYAHKDDVLKTEK--Y 259
           +     G      +   +         +      ++    +    YAH DD++ + K   
Sbjct: 502 IDSTAVGIWDWYIDTNKVTFNNRWAEIIGYKLSEIEPCTINTWYTYAHSDDLVISNKKLQ 561

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ-----NNSKESFEYLSHRNHPSLSAY 314
                E      +      N +          ++     +  +    +L      S    
Sbjct: 562 EHFAGETDYFVSEARMKHKNGHWIWVLDTAKVVEWNTDGSPKRMIGTHLDISERKSTELE 621

Query: 315 FDEGENLTPETVDKCPIPFFVYSHGN---LFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
                +     V   P   +         + Y +     +T Y   + I         L 
Sbjct: 622 LQGSRDRFASLVSNIPGIIYRCRFDEKLSMLYMSEQASEITGYSPDELIHDEPPSFFDLI 681

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
               S     + +    + ++  +   R   I         +              +  +
Sbjct: 682 CEDDSKKIKDEILRCVSAKQS-WSVEYR---ITARDGTLHWVNEKGQAIYADDGSILYLD 737

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATS----DGIAIINREGIILSTNRAVSKLFGY 487
           G   +  +    +   ++++ +  S+LE+ S     G   ++ +   L  +  V  +   
Sbjct: 738 GFILDITE----RYNTQLKINRQQSLLESMSKQGQIGAWEMDLDAHTLYWSDEVKVIHEV 793

Query: 488 PV--EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
           P   E  +      +        ++      ++L    ++E I L  + +E+ +   +  
Sbjct: 794 PEGFEPSIDTAINFYKPGIHRDTISTLFECAVTLGESWSVELIILTYSGQERWVK-SMGQ 852

Query: 546 KKLPFSS--CYSLTMHDISEWKQEKNKLSHAKK 576
            +L          +   I   K+ + +   A +
Sbjct: 853 AELKDGKCVRVFGSFQSIDAHKRLELESEKANR 885


>gi|195541892|gb|ACF98093.1| putative FixL [uncultured bacterium 1042]
          Length = 503

 Score =  290 bits (742), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 69/388 (17%), Positives = 161/388 (41%), Gaps = 22/388 (5%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
              +  +      L +IL+   D   +I ++G I+S N A  + FGY   + + +   + 
Sbjct: 127 DTTQAALAAREAHLRTILDTVLDATVVIEKDGTIVSFNAAAVRQFGYAEAEAVGRNVRML 186

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTL--EKITLGSTKEEKLLSLRIIIKKLPFSSCYS--L 556
           + +      + Y+   L+   ++ +  +++ +G  K+     +++ + ++          
Sbjct: 187 MPEPYRGEHDGYMHRYLTTGEKRIIGVDRVVVGRRKDGSTFPMKLAVGEIKSGDKVFFTG 246

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESS--HKSDFLARVSHEIRTPLTAIIGFSE---VIK 611
            + D++E ++   +L   +    + +      +  + ++HE+  PL+AI  + +    + 
Sbjct: 247 FIRDLTERQESAARLEEIQGELARLARLNELGEMASTLAHELNQPLSAIANYVQGCSRLL 306

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
                 + + R  E      R       I+  L +       K      P ++ + V EA
Sbjct: 307 RDMDDAVAS-RMREALEEAARQSLRAGQIIRHLREF----VTKGATEKAPENIRKLVEEA 361

Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ--IIIST 729
            +L  + + E+ I     F      ++ D   ++Q+  N++ NA+     G +  +++ T
Sbjct: 362 GALALVGSRERGIRSVFDFTPGADMVMVDRIQIQQVLTNLMRNAMEAMREGTRRDLVVRT 421

Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
              ++ EVI+ V DTG G+++    +  +PF            G G+GL ++K +V+A+ 
Sbjct: 422 APHADGEVIVEVSDTGPGISDDVAAQLFRPFVTTKP------GGMGVGLSISKRIVEAHG 475

Query: 790 GKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
           G+ ++ S    G       P  +  +P 
Sbjct: 476 GEIWVDSNDNGGATFRFTLPAIEDKNPE 503



 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/332 (9%), Positives = 87/332 (26%), Gaps = 32/332 (9%)

Query: 278 INLNQYTKKQYFGTLQNNSKESFEYLSHRNHP---SLSAYFDEGENLTPETVDK-CPIPF 333
            N      +     L   +      + HR      +  A     E      +D       
Sbjct: 93  ANQPATIAEIAVFLLVGLAIAWMGGMLHRARQSIDTTQAALAAREAHLRTILDTVLDATV 152

Query: 334 FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393
            +   G +   N + +    Y   + +     +  L+  P   +++      L   ++  
Sbjct: 153 VIEKDGTIVSFNAAAVRQFGYAEAEAVGRN--VRMLMPEPYRGEHDGYMHRYLTTGEKRI 210

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
           I     +   + +                +  + +   G   +  + + +  ++E    +
Sbjct: 211 IGVDRVVVGRRKDGSTFPM---KLAVGEIKSGDKVFFTGFIRDLTERQESAARLEEIQGE 267

Query: 454 LCSI--LEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRKPFTVFLEQNTPSVMN 510
           L  +  L    +  + +  E      N+ +S +  Y      L +     +       + 
Sbjct: 268 LARLARLNELGEMASTLAHE-----LNQPLSAIANYVQGCSRLLRDMDDAVASRMREALE 322

Query: 511 HYLTEILSLDLRQTLEKITLGSTKE-------EKLLSLRIIIKKLPFSSCYSLTMHDIS- 562
               + L         +  +             KL+     +  +        ++ D + 
Sbjct: 323 EAARQSLRAGQIIRHLREFVTKGATEKAPENIRKLVEEAGALALVGSRERGIRSVFDFTP 382

Query: 563 -------EWKQEKNKLSHAKKIAEKESSHKSD 587
                  +  Q +  L++  + A +     + 
Sbjct: 383 GADMVMVDRIQIQQVLTNLMRNAMEAMREGTR 414



 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/347 (10%), Positives = 91/347 (26%), Gaps = 28/347 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           I+  G +   +    +  G    + +G  +  +    +   ++        +    G+  
Sbjct: 154 IEKDGTIVSFNAAAVRQFGYAEAEAVGRNVRMLMPEPYRGEHDGYMH----RYLTTGEKR 209

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREF-SGFRGF--GIVHVNRVDNDPRALGKRLDKKFS 205
           +  ++   +    D +  P+     E  SG + F  G +       +  A  + +  + +
Sbjct: 210 IIGVDRVVVGRRKDGSTFPMKLAVGEIKSGDKVFFTGFIRDLTERQESAARLEEIQGELA 269

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
            L  + +       E     + +   P   + N V   +      DD + +     L   
Sbjct: 270 RLARLNE-----LGEMASTLAHELNQPLSAIANYVQGCSRLLRDMDDAVASRMREALEEA 324

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS-HRNHPSLSAYFDEGENLTPE 324
                      ++   Q  +       +  ++++ E +          A     E     
Sbjct: 325 AR--------QSLRAGQIIRHLREFVTKGATEKAPENIRKLVEEAGALALVGSRERGIRS 376

Query: 325 TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
             D  P    V     +       L      +++ +        ++     +D   I  V
Sbjct: 377 VFDFTPGADMVM-VDRIQI--QQVLTNLMRNAMEAMREGTRRDLVVRTAPHADGEVIVEV 433

Query: 385 MLYRSDRTCIAASARLHT---IQWNRENSLAMTFIPFEKANQFPENM 428
                       +A+L             + ++           E  
Sbjct: 434 SDT-GPGISDDVAAQLFRPFVTTKPGGMGVGLSISKRIVEAHGGEIW 479


>gi|171676487|ref|XP_001903196.1| hypothetical protein [Podospora anserina S mat+]
 gi|170936310|emb|CAP60968.1| unnamed protein product [Podospora anserina S mat+]
          Length = 846

 Score =  290 bits (742), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 95/478 (19%), Positives = 181/478 (37%), Gaps = 25/478 (5%)

Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399
            +  A+  FL          +        L         + +    L  +    IA    
Sbjct: 35  RITRASARFLEEWNPSPEACVGQ----ELLAFVQNQLSPSPVHLKFLTTAIDDAIALRTE 90

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459
             ++  N   S++                     +         +  +  +      +++
Sbjct: 91  RTSMLINTRRSVSWRARVIPYFKGDELLAIVTEWQKNLFTDDEVQPGLSTDEA-FRILVQ 149

Query: 460 ATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
           A  D  I +++  G I + N     L GY  ++I+ K F+VF  +         +   + 
Sbjct: 150 AVKDYAIFLLDTTGNIATWNTGAELLKGYRRDEIVGKHFSVFYGKEDLDSKKPEMELEIC 209

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAK 575
           +   +  ++      K+       ++I  +  +     +     D++E K  +++L    
Sbjct: 210 MRDGRVEDEGWRYR-KDGSRFWANVVITAVYKNGVHVGFGKVTRDLTERKSAESRLI--- 265

Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
              E+    KSDFLA +SHEIRTP+  ++    ++ +         R  +    +D SG 
Sbjct: 266 AAYEESEKLKSDFLANMSHEIRTPMHGMLSACALLLDTSLSS----RQRDIVGIMDESGQ 321

Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695
           ++L ++ND+LD SK+ SG  ++H + V +   V+  +  VQ       +      A ++P
Sbjct: 322 VLLQVINDILDYSKLASGSFSIHSDIVGITSIVTSVVRSVQATLPP-SVHFEMFLAPDLP 380

Query: 696 R-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTN 750
           R +  D    +QI  NI+ NA  FT  G  I +       +     V+  V DTG+G+  
Sbjct: 381 RSVQGDPLRYRQILHNIVGNAAKFTEKGS-IRVRAGVQREDHDSYMVMTEVTDTGIGIPE 439

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK-GTLIEII 807
                   PF Q   +   + +GTGLGL +AK++ +   G       P + G++    
Sbjct: 440 AAAASLFTPFTQFDATTTKQYKGTGLGLSIAKSLAELMGGSIGYRPNPERHGSIFWFT 497



 Score = 41.9 bits (97), Expect = 0.48,   Method: Composition-based stats.
 Identities = 15/136 (11%), Positives = 38/136 (27%), Gaps = 9/136 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL--LKRQNTW 143
            + +D  G +   +       G    +++G           +D      +L    R    
Sbjct: 156 IFLLDTTGNIATWNTGAELLKGYRRDEIVGKHFSVFYGKEDLDSKKPEMELEICMRDGRV 215

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFG-IVHVNRVDNDPRALGKRLDK 202
             +   +  +G+  +  + + A+     +       GFG +           +      +
Sbjct: 216 EDEGWRYRKDGSRFWANVVITAVYKNGVH------VGFGKVTRDLTERKSAESRLIAAYE 269

Query: 203 KFSHLHEIKKGHSSVE 218
           +   L      + S E
Sbjct: 270 ESEKLKSDFLANMSHE 285


>gi|229189197|ref|ZP_04316221.1| hypothetical protein bcere0002_8810 [Bacillus cereus ATCC 10876]
 gi|228594241|gb|EEK52036.1| hypothetical protein bcere0002_8810 [Bacillus cereus ATCC 10876]
          Length = 896

 Score =  290 bits (742), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 80/338 (23%), Positives = 152/338 (44%), Gaps = 18/338 (5%)

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            ++++++            +    +  +L      T E        + +   L++  ++L
Sbjct: 395 HQELIQQTVDNLGLTIHSIMGRMRIQTLLHESQAMTEELQVQSEELQTQAEELQMQAEEL 454

Query: 549 PFSSCYSLTMHDISEWKQEK-----NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
             ++    +  + +E K        ++L        + S +KS+FLA +SHE+RTPL +I
Sbjct: 455 RTTNEQLESRTEEAEQKTADLQITKSELEEKASELLRSSKYKSEFLANMSHELRTPLNSI 514

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +  SE++K      L +    E A  I  SG  +L ++ND+LD+SK+E+GK+++ FE  +
Sbjct: 515 LLLSEMLKENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIFEATN 573

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSG 722
           + +  +         A +K +      ++ IP +   D + ++QI  N+LSNA  FT  G
Sbjct: 574 ISDMAASMHQNFLHIAAQKNVEFTIKDSDTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKG 633

Query: 723 GQ------IIISTTHTS-----NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
                   I IS          N+ + + V+DTG+G++  + +   + F Q   +   + 
Sbjct: 634 SVSLHFDSIEISNLSHDMQSISNDWMKISVKDTGIGISKEQHQLIFEAFQQADGATIRKY 693

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            GTGLGL + K       G   + S   +G+   +  P
Sbjct: 694 GGTGLGLSICKEFARLLGGWITLESHVGEGSTFTVYIP 731


>gi|222055917|ref|YP_002538279.1| histidine kinase [Geobacter sp. FRC-32]
 gi|221565206|gb|ACM21178.1| histidine kinase [Geobacter sp. FRC-32]
          Length = 645

 Score =  290 bits (742), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 76/248 (30%), Positives = 137/248 (55%), Gaps = 8/248 (3%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  +++ AE+ +  KS FLA +SHE+RTP+  I+G  +++ +   G L   +  E    
Sbjct: 249 ELEQSRQAAEEGNRAKSQFLANMSHELRTPMNGILGVLQLLLSGHAGQL-EKKQRELLLK 307

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
             +SG+L+L I++D+LD+SKIE+GK+ +H +P SL + +S+A+      A  K + +  S
Sbjct: 308 ATKSGDLLLQIISDILDLSKIEAGKLQIHEQPFSLRKCLSDAVDYFSSEAQGKGLHLTLS 367

Query: 690 FANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIST-----THTSNEEVILRVRD 743
            A ++P ++  D   ++Q+ LN++ NA+ FT  G ++ +       T T   E+   + D
Sbjct: 368 IAPDVPDVVKGDQVRLRQVLLNLIGNAVKFTDHG-RVEVKAVTGNKTATGETEITFTIND 426

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TG+G+   +     + F Q+ +S + R  GTGLGL ++  +V+   G+    S   +G+ 
Sbjct: 427 TGIGIPADKKHLLFRSFSQVDSSDRRRYGGTGLGLAISSQIVEMMGGRIAFDSREGEGST 486

Query: 804 IEIIFPLY 811
                PL 
Sbjct: 487 FFFTVPLA 494


>gi|206889206|ref|YP_002249288.1| sensor histidine kinase, putative [Thermodesulfovibrio yellowstonii
           DSM 11347]
 gi|206741144|gb|ACI20201.1| sensor histidine kinase, putative [Thermodesulfovibrio yellowstonii
           DSM 11347]
          Length = 884

 Score =  290 bits (742), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 113/747 (15%), Positives = 229/747 (30%), Gaps = 93/747 (12%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG-KT 147
            D    +   ++      G    ++I   L  +      +      + +K        +T
Sbjct: 210 TDMDNIVTAWNKGAENIFGYTNEEVIEKPLP-IIPDFLREMEKIYFERIKNDEILKDIET 268

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
            +   EG  + V + ++  PI S N E  G     I+              R +++ + +
Sbjct: 269 IMVTKEGKLVEVSLTMS--PIKSSNGEIIGVSR--IIRDITEKKRLERDLIRRNEELTKI 324

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
             I     S                     NK+  +        + L   +  L   +E 
Sbjct: 325 LFISSAVRSTLDL-----------------NKLLRMILTVITMGEGLGFNRAVLFLVDE- 366

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
              E      I     +  +    + ++     + L           F++          
Sbjct: 367 ---ENNVLKGIMAVGPSSYEEAWQIWSSMAREKKTLFEVLDELNKREFEQDS-FLERLCR 422

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
              IP                           I  A     + +   +    A   ++  
Sbjct: 423 NISIPL---------------------SDNTPIVRAVKEGKIFNIKDVHKEEADPVII-- 459

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR-- 445
           +   +   A   L     ++          + +     +++       + V   I     
Sbjct: 460 QQLGSFAYAVIPLF--SKDKAIGAVWVDNLYTRKPITEQDIHFLKGFADQVAGAIENAWI 517

Query: 446 --KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
             K+E    +L  +  + +D I   +    I   N +     G    +++ K     + +
Sbjct: 518 FDKIEKAEKELEMLFNSITDLIYYTDENYTIKKVNHSFLNAIGLKENEVVGKKCFKLIHR 577

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDI 561
               +      + +     Q  E           +  +         ++         +I
Sbjct: 578 TNSPLQECPHRKAIETGRPQVGELEENYLEG---VYLISSSPIFDKNNNVIGTINVAKNI 634

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           +E +  K K+   +K+A        +  A+V+HEIR PL AI GF++ +       L   
Sbjct: 635 TELRNLKEKIISMEKMA-----ALGEMAAKVAHEIRNPLLAIGGFAKRLDKD----LKEE 685

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
           +  EY   I      +  I+N++L   K       +  E   +   V   I+ V+    E
Sbjct: 686 KSKEYIKVIIEEVKRLERILNEILSFVKP----YPIGKESFKIKGLVDNVINFVESTLKE 741

Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN------- 734
                +     +   +  +   +K++ LN++SNA   T  G  I +              
Sbjct: 742 NNNEFKVIVKEDF-SVPGNYDKLKEVLLNLISNANEATKDG-LITLKIEKADKLPVEIPD 799

Query: 735 ---EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
              E +++ V DTG G+    L++   PF     S      GTGLGL ++K +V+ + G 
Sbjct: 800 IQKEYLLIEVEDTGCGIQKENLKRIFDPFFTTKIS------GTGLGLAISKRIVEEHGGI 853

Query: 792 FYIFSTPAKGTLIEIIFPLYDTSHPHD 818
             + S   KGT+  +  PL+     ++
Sbjct: 854 IKVESEINKGTIFRVYLPLHKEGGENE 880



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 65/140 (46%), Gaps = 7/140 (5%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            ++E     L S++++++D I   + + I+ + N+    +FGY  E+++ KP    +   
Sbjct: 187 AQIEELKSYLESLIQSSADAIIATDMDNIVTAWNKGAENIFGYTNEEVIEKPL-PIIPDF 245

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHD 560
              +   Y   I + ++ + +   T+  TKE KL+ + + +  +  S+   +     + D
Sbjct: 246 LREMEKIYFERIKNDEILKDI--ETIMVTKEGKLVEVSLTMSPIKSSNGEIIGVSRIIRD 303

Query: 561 ISEWKQEKNKLSHAKKIAEK 580
           I+E K+ +  L    +   K
Sbjct: 304 ITEKKRLERDLIRRNEELTK 323



 Score = 46.9 bits (110), Expect = 0.015,   Method: Composition-based stats.
 Identities = 17/147 (11%), Positives = 41/147 (27%), Gaps = 9/147 (6%)

Query: 313 AYFDEGENLTPETVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
           A  +E ++     +             N+    N     +  Y + + IE       L  
Sbjct: 187 AQIEELKSYLESLIQSSADAIIATDMDNIVTAWNKGAENIFGYTNEEVIEKP-----LPI 241

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
            P              ++D         + T +      + ++       +   E +  +
Sbjct: 242 IPDFLREMEKIYFERIKNDEILKDIETIMVTKE---GKLVEVSLTMSPIKSSNGEIIGVS 298

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSIL 458
            I  +  + +  +R +     +L  IL
Sbjct: 299 RIIRDITEKKRLERDLIRRNEELTKIL 325


>gi|71018371|ref|XP_759416.1| hypothetical protein UM03269.1 [Ustilago maydis 521]
 gi|46098947|gb|EAK84180.1| hypothetical protein UM03269.1 [Ustilago maydis 521]
          Length = 1482

 Score =  290 bits (742), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 84/333 (25%), Positives = 144/333 (43%), Gaps = 33/333 (9%)

Query: 500  FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS------- 552
              E      +   +   L        E        E +    +   ++            
Sbjct: 832  IYEVWDSPGIREAIGRAL-NGESVVQEMEI-----EGRWFRTQYTPQREESYDHEANEGT 885

Query: 553  --CYSLTMHDISEWKQEKNKLSHAKKI----------AEKESSHKSDFLARVSHEIRTPL 600
                     DI++ ++ + KL  +             A++ S  KS+FLA +SHEIRTP+
Sbjct: 886  IIGVVGASMDITDRRRAELKLEESMHERSRALAAETAAKEASRIKSEFLANMSHEIRTPI 945

Query: 601  TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
              +IG SE++ + +     +    ++A  I RS + +L ++ND+LD  K+E GKM+L   
Sbjct: 946  AGVIGLSELLCDTQL----SQEQRDFAENIQRSADALLTVINDILDFEKLELGKMDLEKT 1001

Query: 661  PVSLDEAVSEAISLVQLYANEKRILIRTSFANN-IPRILADLRSVKQIALNILSNAIHFT 719
              +L+  + +   ++     +K +  R     N   +I+ D   ++Q+  N+L+NAI FT
Sbjct: 1002 AFNLNVVIMDTQKMLTFATQKKGLEFRNECQLNFTGQIVGDAGRLRQVLTNLLTNAIKFT 1061

Query: 720  PSGG-QIIISTTHTSNE--EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
              G   + +  T+   +   V   VRDTG G++   L++  +PF Q   S   R  GTGL
Sbjct: 1062 AVGSITLRVIETYEDQKSLHVHFEVRDTGCGISQATLKRLFQPFSQADPSFARRFGGTGL 1121

Query: 777  GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            GL + K +VD   G   + S   KG+      P
Sbjct: 1122 GLSICKNLVDLMGGTIGLESVENKGSNAWFSIP 1154



 Score = 65.8 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/365 (9%), Positives = 86/365 (23%), Gaps = 39/365 (10%)

Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
            L ++      +E+          +I                        L+ R      
Sbjct: 381 SLTSDAEKQAGNEQPPFTTPNRSDSIESRGAPLPHESYFT---ISIVPTRLAERRMSPAD 437

Query: 313 AYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSF---LLLTKYKSVDDIEIAGGLST 368
               + E L              + S G+    N +    L + + K+  D         
Sbjct: 438 LQLSKAEQLKEGVFHTIETAIMALSSDGSTVIRNRACDEMLKMFEKKNPQDKPKKQEQPK 497

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR--------------------E 408
                   D + +  VM+  ++        +   I                         
Sbjct: 498 PHKEGVEVDLSWLSDVMVCYTEDFSEPFPEQNWPIYRAAILGQFTKPVRIGCVATDTGVR 557

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE---VMQLCSILEATSDGI 465
               +   P   A  F  ++       +  DT    R +E+E        +I ++    +
Sbjct: 558 RVYEIVAKPIRDAGGFGHHIGGVITLVDVTDTEKKYR-LEVEKKGEEYFRTICDSMPQML 616

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
                +G +   N    +  G   + +    +     ++  +  N + +  L        
Sbjct: 617 WTAGPDGTVDWFNEGWYRFTGLDSQTLFSLGWQQCFHEDDMAETNAHWSHSLRTGEP--Y 674

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSC-----YSLTMHD-ISEWKQEKNKLSHAKKIAE 579
           + +      +     +      +          +  +  D  SE K  +       ++  
Sbjct: 675 QVMYRARRHDGVWKWMLGRALPVREPGSNKVIKWYGSCTDCDSEVKALEASRKSQTQLTS 734

Query: 580 KESSH 584
             +  
Sbjct: 735 VINHA 739



 Score = 48.5 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/401 (7%), Positives = 89/401 (22%), Gaps = 23/401 (5%)

Query: 71  ENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH-IDP 129
           E  F         +  W     G +   +E   +  G  +  +  +            + 
Sbjct: 602 EEYFRTICDSMP-QMLWTAGPDGTVDWFNEGWYRFTGLDSQTLFSLGWQQCFHEDDMAET 660

Query: 130 NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRV 189
           N H    L+    +         +G  ++  +   ALP+          + +G       
Sbjct: 661 NAHWSHSLRTGEPYQVMYRARRHDG--VWKWMLGRALPVR-EPGSNKVIKWYGSCTDCDS 717

Query: 190 DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH 249
           +       ++   + + +                I +    P    ++    +       
Sbjct: 718 EVKALEASRKSQTQLTSVINHAHVTIWAIDLDA-IITIAEGPGVRSLRLAPGTPNGSDGD 776

Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF-------EY 302
                            +     ++         ++    G  +  ++ S         +
Sbjct: 777 GSGSGSGNSLSGSLGAGTVNARSDESKDAESQTNSQSVVSGPGKRAAQRSMIGRSIYEVW 836

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEI 362
            S     ++    +    +    ++               Y            +   I  
Sbjct: 837 DSPGIREAIGRALNGESVVQEMEIEG--------RWFRTQYTPQREESYDHEANEGTIIG 888

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
             G S  +   + ++    + +      R   A +A     +   E    M+        
Sbjct: 889 VVGASMDITDRRRAELKLEESMHER--SRALAAETAAKEASRIKSEFLANMSHEIRTPIA 946

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
                           + R     ++     L +++    D
Sbjct: 947 GVIGLSELLCDTQLSQEQRDFAENIQRSADALLTVINDILD 987



 Score = 39.2 bits (90), Expect = 3.1,   Method: Composition-based stats.
 Identities = 10/99 (10%), Positives = 27/99 (27%), Gaps = 4/99 (4%)

Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520
               + +++    I   NR    +F       + +     + +N  +     + E   + 
Sbjct: 272 APTPMLVLDHNRRIRMMNRPCESIFLMTGVSCMGQMMEKLIIENHRADFYTAIQEASQVR 331

Query: 521 LRQTLEKITLGST----KEEKLLSLRIIIKKLPFSSCYS 555
                    L        ++K+ S  + I     +    
Sbjct: 332 ATAAWAPPVLTRLTFLQDDQKMFSADMAISAWHPTDEVF 370


>gi|300936770|ref|ZP_07151663.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           MS 21-1]
 gi|300458100|gb|EFK21593.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           MS 21-1]
          Length = 593

 Score =  290 bits (742), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 83/371 (22%), Positives = 171/371 (46%), Gaps = 28/371 (7%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            + +         I+E  +DG+  I+R+G + + N A   + GY   +++ +P+++    
Sbjct: 239 AQALRETRTLNDLIIENAADGVIAIDRQGDVTTMNPAAEVITGYQRHELVGQPYSMLF-- 296

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMH 559
              +     + + L                ++ + + L +   ++  +        +   
Sbjct: 297 -DNTQFYSPVLDTLEHGTEHV-ALEISFPGRD-RTIELSVTTSRIHNTHGEMIGALVIFS 353

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           D++  K+ + +++ A+++A        + +A V+HE+R PLTAI G+ ++++ Q   P+ 
Sbjct: 354 DLTARKETQRRMAQAERLAT-----LGELMAGVAHEVRNPLTAIRGYVQILRQQTSDPI- 407

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
              + EY + + +  + +  ++  LL+ S+    +    ++ VSL+  V E + LVQ   
Sbjct: 408 ---HQEYLSVVLKEIDSINKVIQQLLEFSRPRHSQ----WQQVSLNALVEETLVLVQTAG 460

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
            + R+   +   N +  I AD   +KQ+ LNIL NA+    + G+I I T   S+ +  +
Sbjct: 461 VQARVDFISELDNELSPINADRELLKQVLLNILINAVQAISARGKIRIRTWQYSDSQQAI 520

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            + D G G+     +K   PF     S      GTGLGL L++ +++A+ G   + S P 
Sbjct: 521 SIEDNGCGIDLSLQKKIFDPFFTTKAS------GTGLGLALSQRIINAHQGDIRVASLPG 574

Query: 800 KGTLIEIIFPL 810
            G    +I P+
Sbjct: 575 YGATFTLILPI 585



 Score = 40.8 bits (94), Expect = 0.95,   Method: Composition-based stats.
 Identities = 21/272 (7%), Positives = 67/272 (24%), Gaps = 17/272 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G +  ++       G    +++G     +    +    + + D L+          
Sbjct: 263 IDRQGDVTTMNPAAEVITGYQRHELVGQPYSMLF--DNTQFYSPVLDTLEHGTEHVALEI 320

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
            +P     + + +  +   I++ + E  G     I        + +    + ++  +   
Sbjct: 321 SFPGRDRTIELSVTTS--RIHNTHGEMIGA--LVIFSDLTARKETQRRMAQAERLATL-- 374

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
                    E         ++P   +R   ++           + L      + +  +  
Sbjct: 375 --------GELMAGVAHEVRNPLTAIRGYVQILRQQTSDPIHQEYLSVVLKEIDSINKVI 426

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE-NLTPETVD 327
               E     +             +         +  R         +    N   E + 
Sbjct: 427 QQLLEFSRPRHSQWQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSPINADRELLK 486

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDD 359
           +  +   + +   +       +   +Y     
Sbjct: 487 QVLLNILINAVQAISARGKIRIRTWQYSDSQQ 518


>gi|227891179|ref|ZP_04008984.1| two component system histidine kinase [Lactobacillus salivarius
           ATCC 11741]
 gi|227867053|gb|EEJ74474.1| two component system histidine kinase [Lactobacillus salivarius
           ATCC 11741]
          Length = 461

 Score =  290 bits (742), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 80/362 (22%), Positives = 156/362 (43%), Gaps = 26/362 (7%)

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
              +  S+LE    GI +I+ +  +  +N      F +   +   + +  ++       +
Sbjct: 119 RKREYLSLLEYIDIGILVIDYKNRLTMSNELGKDFFDFD-NEWKNQDYQNYIYNLDVRKL 177

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT-MHDISEWKQEK 568
              +        +Q + KI        K++    I   +       +  + D++  K+ +
Sbjct: 178 IEQVKLTKEDKKKQIVLKIDTVQ----KIVETSAIYIPIDSKRYLIMLMLRDLTAQKEME 233

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
            K              + DF+  +SHEI+TP+TAI GFSE + +            ++  
Sbjct: 234 KK--------------QLDFVGNLSHEIKTPITAITGFSETLLDGALD--DKEVSKQFIE 277

Query: 629 YIDRSGNLVLDIVNDLLDISKI-ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
            I      + ++V+D++ IS++ E G  +L+ E V++ + V + + L      +K + +R
Sbjct: 278 IIHDESTKLSNLVDDMITISRLNEHG--SLNIELVNIFKLVKDTLQLFSHEIEKKGLNVR 335

Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747
                 +  +  D   +K I  N++ NAI +    G+I I   +    E +  + DTG+G
Sbjct: 336 IEIDEEL-SLYCDKLKLKHIITNLIQNAIRYNLENGEIKIKVQNDKKNEWVFVISDTGIG 394

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           +++ + E+  + F ++  S      GTGLGL + K  VDA  G+  + S   KGT   +I
Sbjct: 395 ISDKDKERIFERFYRVDKSHSKTVGGTGLGLAVVKESVDALSGRIKVKSQINKGTTFYVI 454

Query: 808 FP 809
            P
Sbjct: 455 LP 456


>gi|167750379|ref|ZP_02422506.1| hypothetical protein EUBSIR_01353 [Eubacterium siraeum DSM 15702]
 gi|167656739|gb|EDS00869.1| hypothetical protein EUBSIR_01353 [Eubacterium siraeum DSM 15702]
          Length = 581

 Score =  290 bits (742), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 83/367 (22%), Positives = 154/367 (41%), Gaps = 28/367 (7%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           + +E E  +   ILE+  DG+ + + +  ++S NRA  KL G   E          + + 
Sbjct: 236 KTLEDEREKERFILESLQDGVILYDNDLSVISINRAGLKLLGASDE-----NCASTVPEL 290

Query: 505 TP-SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                +     +  + D   T+E    G     ++  +              + + D+++
Sbjct: 291 ARKPEIISGAEKAANEDRTVTIESTVDGRILLVQVFPVSKSGIDAMHGG--LMVIRDVTD 348

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            +  +                K+DF A   HE++TPLTAI GF+E +      P     Y
Sbjct: 349 KRMSE--------------QLKADFFANAGHELKTPLTAISGFAE-LLENGLVPKDKKDY 393

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
             Y   I      +  I++D+L+IS +E+           L E  +     ++  A+ K 
Sbjct: 394 --YIGKILTEAKRMSTIISDILEISSLENKTTAEEVTDCKLSEICTAVKECLEPAASAKN 451

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
           + I    + +   + A  + + ++  NI+SNAI +   GG++ I+  H   E   + VRD
Sbjct: 452 VTI--ELSGDSFTVRAAYKHIYELVENIVSNAIKYNKDGGRVEITL-HDVGETGCIYVRD 508

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
            G+G+    L +  + F ++   +  +   TGLGL + K +V+   G   + S   KGTL
Sbjct: 509 NGIGIPKESLNRVFERFYRVDKGRSTKEGSTGLGLSIVKHIVNCYGGTVTLDSELGKGTL 568

Query: 804 IEIIFPL 810
           + +  P+
Sbjct: 569 VCVRLPI 575


>gi|198243538|ref|YP_002214352.1| phosphate regulon sensor protein [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|197938054|gb|ACH75387.1| phosphate regulon sensor protein PhoR [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|326622100|gb|EGE28445.1| phosphate regulon sensor protein PhoR [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 431

 Score =  290 bits (742), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 72/427 (16%), Positives = 155/427 (36%), Gaps = 37/427 (8%)

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             +L       +     L  + W     L +         +        G+    +  + 
Sbjct: 33  WFLLAAVTGLLVWHFWNLLRLSW----WLWVDRSMTPPPGRGSWEPLLYGLHQMQLRNKK 88

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            +R++   + +  S  E+  D + +   EG I   N    ++ G    D   +     L 
Sbjct: 89  RRRELGNLIKRFRSGAESLPDAVVLTTEEGGIFWCNGLAQQILGLRWPDDNGQNILNLLR 148

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
               +               +   +         + L +R++           +   D+ 
Sbjct: 149 YPEFTQYL----------KTRDFTRPLHLVLNTGRHLEIRVMPY---TDKQLLMVARDVM 195

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  Q +                + +F A VSHE+RTPLT + G+ E+++ Q        +
Sbjct: 196 QMHQLEG--------------ARRNFFANVSHELRTPLTVLQGYLEMMQEQALEGATREK 241

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                + +      +  +V  LL +SKIE+    L  E V +   +       Q  + +K
Sbjct: 242 A---LHTMREQTYRMEGLVKQLLTLSKIEAAPALLLNEKVDVPMMLRVVEREAQTLSQQK 298

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
                    +++  +L +   ++    N++ NA++ TP+G  I +S    ++      ++
Sbjct: 299 H-TFTFEVDDSL-SVLGNEEQLRSAISNLVYNAVNHTPAGTHITVSWRRAAHG-AEFCIQ 355

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G G+    + +  + F ++  ++  +  G+GLGL + K  ++ +  +  I S+P KGT
Sbjct: 356 DNGPGIAAEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHALNHHESRLQIDSSPGKGT 415

Query: 803 LIEIIFP 809
               + P
Sbjct: 416 RFSFVLP 422


>gi|317032133|ref|XP_003188808.1| two-component system protein A [Aspergillus niger CBS 513.88]
          Length = 753

 Score =  290 bits (742), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 105/605 (17%), Positives = 214/605 (35%), Gaps = 31/605 (5%)

Query: 219 KEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTI 278
           +   D+    SPP   R++ +           +  L        T  +            
Sbjct: 6   RTGSDVARSLSPPSKDRVRQRFLLPNVGAMDLNKRLFHLDIENKTQAQPLNFSMVTTPPD 65

Query: 279 NLNQYTKKQYFGTLQNNSKES-FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP-FFVY 336
           + +          +++       +   HR          +            P P   + 
Sbjct: 66  DEDDDEVNHLKLKVESKQSPHDHDKPHHRQKKMPDTDAQQPPAALGRIYRYTPTPSVILD 125

Query: 337 SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA 396
              ++   + S +          +            P L        +    + +   + 
Sbjct: 126 PSLHVVEVSDSHVAFAGLSRALLLGRFICDICPRILPALDVAILFGALRAAITTQDVQSI 185

Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
                    +      +   P  + +     + +     +   T ++K            
Sbjct: 186 DKICID---DASTCYTLRITPIFENSNLLYIVLEALDITKRQATSVSKPHESYSNETYKV 242

Query: 457 ILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH--YL 513
           +L+   D  I +++  G I++ N   + L GY  ++I+ + F+ F              L
Sbjct: 243 LLDTVKDYAIFMLDTHGHIVTWNTGAALLKGYSAKEIIGRHFSTFYSLEDRMADKPGKEL 302

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNK 570
              L       +E       K+       ++I  +        ++    D++E    + +
Sbjct: 303 EVCLREGK---VEDEGWRYRKDGSRFWANVLITPMYALGRHIGFTKVTRDLTERNAAETR 359

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           +       E+ S  K+DFLA +SHEIRTP+  ++               N +  EY++ I
Sbjct: 360 MI---AAFEESSRLKTDFLANMSHEIRTPMNGMLLA----LTSLLATDLNEQQREYSSII 412

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
           + S N++L ++ND+LD SK+ SG   LH +  S+D   +  +   +  A +  + + +S 
Sbjct: 413 EDSTNVLLQVINDVLDYSKLSSGSFTLHPDTFSVDSITNAVVRNCKG-ALKTGVQLTSSI 471

Query: 691 ANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE------VILRVRD 743
           ++N P ++  D    +Q+  N++ NA+ FT  G  + I+TT + + E      +   V D
Sbjct: 472 SSNFPSQVEGDPLRYRQVLQNLVGNAVKFTEEG-YVKINTTFSEDAEDPSVYYIRTEVAD 530

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK-GT 802
           TGVG+    L     PF +   +   R +GTGLGL + K++ +   G       P + G+
Sbjct: 531 TGVGVPEDALGSLFTPFTRFAETGSKRYQGTGLGLSICKSLAELMDGSVGYRPNPERHGS 590

Query: 803 LIEII 807
           +  + 
Sbjct: 591 VFWVT 595



 Score = 54.6 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/124 (14%), Positives = 41/124 (33%), Gaps = 7/124 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH--IDPNNHIGDLLKRQNTW 143
            + +D HG++   +       G  A ++IG        +     D      ++  R+   
Sbjct: 252 IFMLDTHGHIVTWNTGAALLKGYSAKEIIGRHFSTFYSLEDRMADKPGKELEVCLREGKV 311

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +   +  +G+  +  + +   P+Y+  R   GF    +       N          ++
Sbjct: 312 EDEGWRYRKDGSRFWANVLI--TPMYALGRHI-GFTK--VTRDLTERNAAETRMIAAFEE 366

Query: 204 FSHL 207
            S L
Sbjct: 367 SSRL 370


>gi|46202705|ref|ZP_00052736.2| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 686

 Score =  290 bits (742), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 73/642 (11%), Positives = 198/642 (30%), Gaps = 35/642 (5%)

Query: 182 GIVHVNRVDNDPRALGKRLDKKFSHLHEIK--KGHSSVEKEKYDIFSQQSPPPHLRMKNK 239
             +              +     +   E    K   S      D  + +       +  +
Sbjct: 64  ATIRSEAAILTSMQREIKARGGVAAFDETAWYKMFMSHLDLFSDDPADKPLHALYFVTAQ 123

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLN---QYTKKQYFGTLQNNS 296
             +     ++        + P          +      ++ +             +    
Sbjct: 124 GIASASSVSNPTRRADASERPYFVFHRDHPGDDLYISALSQSKITGLWVFFLTQRINGPD 183

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP----FFVYSHGNLFYANPSFLLLT 352
                 L                N   E  ++  +P      +            F    
Sbjct: 184 GSFQGVLGMSLRI----------NRFEELFERLRLPADGSISILRSDGAPLFRHPFTEAF 233

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
                 DI     +       +   +       +   +         + ++  +      
Sbjct: 234 ATTKPGDIAGLAAMVEKGAGFQAQVSPFDGKARIAGYNMGRRYPILAVASVTLDGALGGW 293

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG 472
              + +         +   G+        +   + E  + +L   ++   + I   +  G
Sbjct: 294 YRTLSWFTGLGVA-ALGLGGVLFVFTLRHLGSLEREARMRRLTQTVDQNPNMIMTTDPVG 352

Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
           +I   N +  +  G+  E+++ +   +    +    +   L   +               
Sbjct: 353 VIDYANPSFYRFTGFTPEEVIGQTPRILKSGDASPEIYADLWTTIRAGREWRG--EMPNR 410

Query: 533 TKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
            ++ +     ++I  +         +     DISE K+ + +++      ++ +     F
Sbjct: 411 RRDGQTYWASVVISPVLDPENRVCGFIGMQEDISERKRIEGRVAELVAELKESNQELEQF 470

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
               SH++R PL  I  +   +  ++     +    EY  +       +  +++DLL+ S
Sbjct: 471 AYVASHDLRQPLRMINSYL-GLLRKKLVSSFDAEAEEYFAFASDGARRLDQMISDLLEFS 529

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIA 708
           +I  GK +  +E V L+  +++ +  + +  ++    +       +P I  D   + ++ 
Sbjct: 530 RI--GKQS-AWESVDLNGVLADGLQNLHVAISDSGACVT--MPEGLPVIPGDRSELTRLF 584

Query: 709 LNILSNAIHFTPSGGQIIISTTHTSNE-EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
            N++ NA+ + P   +  +         + IL V+D G+G+    LE+    F ++ +  
Sbjct: 585 QNLIGNALKYCPPERKPAVEIACGDGGRDWILSVKDNGIGIEADCLERVFGIFQRLVSRT 644

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             + EGTG+GL + + + + + G+ ++ S   +G+   +  P
Sbjct: 645 --QYEGTGIGLAVCRKIAEHHGGRIWVESVLDQGSTFFVTLP 684



 Score = 64.7 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 20/183 (10%), Positives = 48/183 (26%), Gaps = 14/183 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTWYGK 146
            D  G +   +    +  G    ++IG     +       P     +   ++    W G+
Sbjct: 348 TDPVGVIDYANPSFYRFTGFTPEEVIGQTPR-ILKSGDASPEIYADLWTTIRAGREWRGE 406

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                 +G   +  + ++  P+        GF   G+                L  +   
Sbjct: 407 MPNRRRDGQTYWASVVIS--PVLDPENRVCGF--IGMQEDISERKRIEGRVAELVAELKE 462

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
            ++  +  + V              P   + + +  L +      D    E +   +   
Sbjct: 463 SNQELEQFAYVASHDLR-------QPLRMINSYLGLLRKKLVSSFDAEAEEYFAFASDGA 515

Query: 267 SSL 269
             L
Sbjct: 516 RRL 518


>gi|226329133|ref|ZP_03804651.1| hypothetical protein PROPEN_03036 [Proteus penneri ATCC 35198]
 gi|225202319|gb|EEG84673.1| hypothetical protein PROPEN_03036 [Proteus penneri ATCC 35198]
          Length = 397

 Score =  290 bits (742), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 74/409 (18%), Positives = 145/409 (35%), Gaps = 47/409 (11%)

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
              L +         +        GI       R  +R++   + +  S  E+  D + +
Sbjct: 19  SKWLWLDRSVLPPEGRGGWEPIFYGIRQTQQRNRKRRRELGDLIKRFRSGAESLPDAVVM 78

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
           +  EG I   N     L G+   +   +     L                         +
Sbjct: 79  MTNEGNIFWCNSLAQHLLGFRWPEDNGQNIFNLLRYPDFLHYF----------TAGDFSR 128

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
               S     ++  R++           +   D++E  + +              + + D
Sbjct: 129 PLTISLNSGSIVEFRVMPY---SEDQRLMVARDVTEKNKLE--------------NSRRD 171

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           F A VSHE+RTPLT I G+ E+++      +  P   +    +      +  +V  LL +
Sbjct: 172 FFANVSHELRTPLTVIQGYLEMMEEN---SVAKPAEHKAIVTMQEQAKRMDTLVQQLLQL 228

Query: 648 SKIESGKMNLHFEPVSLDEAVS--EAISLVQLYAN-----EKRILIRTSFANNIPRILAD 700
           S+IES         + L++ V     ++L+Q  AN     + +I+       +   +  +
Sbjct: 229 SRIESAPH------IDLNKIVDIPAILALLQQEANSLSQGQHQIVFDVD---DQWAVRGN 279

Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760
              ++    N++ NAI+ T  G  I ++        +   V D G G++   L +  + F
Sbjct: 280 EEQLRSAVSNLVYNAINHTEEGTTIKVNWKKIPQGML-FSVSDNGAGISAEHLTRLTERF 338

Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            ++  ++     GTGLGL + K  +  +  +  I S    G+    I P
Sbjct: 339 YRVDKARSRHSGGTGLGLAIVKKSLLHHHSQLNIESKVGVGSTFSFILP 387


>gi|153869726|ref|ZP_01999262.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
 gi|152073807|gb|EDN70737.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
          Length = 549

 Score =  290 bits (742), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 85/266 (31%), Positives = 139/266 (52%), Gaps = 16/266 (6%)

Query: 554 YSLTMHDISEWKQEKNKLS-------HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
           +   + DI+E K  + KL         AKK AE  +  KS+FLA +SHE+RTPL  I+G+
Sbjct: 31  FVAIVRDITERKHAEAKLQLAKNAAEAAKKTAEIANKAKSEFLANMSHELRTPLNGILGY 90

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
           ++++ + +       +  E    I RSG  +L ++ND+LD+SKIE+GK+ +      L  
Sbjct: 91  TQILNHDKR---LTDKQKEGIQIIHRSGEHLLILINDILDLSKIEAGKLEMSPIDFGLPI 147

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI 725
            + + + L+++ A +K I +       +P  +  D + ++Q+ LN+LSNAI FT  G  +
Sbjct: 148 FLQDIVDLMKMRAEQKSIELMYETLYPLPMGVRTDKKRLRQVLLNLLSNAIKFTDKG-HV 206

Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
                +  N      V DTG G+   +LE    PF Q+   Q  + EGTGLGL ++K +V
Sbjct: 207 NFKVIY-DNGRARFEVEDTGCGVPADQLESIFLPFQQM-GDQHQQLEGTGLGLAISKQLV 264

Query: 786 DANMGKFYIFSTPAKGTLIE--IIFP 809
               G+ ++ +    G+L    I  P
Sbjct: 265 TMMGGQLHVETLLGTGSLFWFDISLP 290


>gi|254507539|ref|ZP_05119673.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Vibrio parahaemolyticus 16]
 gi|219549609|gb|EED26600.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Vibrio parahaemolyticus 16]
          Length = 929

 Score =  290 bits (742), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 88/341 (25%), Positives = 158/341 (46%), Gaps = 19/341 (5%)

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
           F Y +   + +P +        ++++      L + +   +             +++ + 
Sbjct: 191 FAYRLMYDVTRPISHM-----KNMVDRIRRGHLDVRIEGKMHGELDSLKNGINAMAVSLS 245

Query: 545 IKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
              +           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTPL
Sbjct: 246 EYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPL 305

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
             +IGF+  +   +          +Y N I++S   +L+I+ND+LD SK+E+GK+ L   
Sbjct: 306 NGVIGFTRQMLKTKLTN----SQTDYLNTIEKSATNLLNIINDILDFSKLEAGKLALESI 361

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFT 719
           P    E++ E +SL    A+EK + +       IP  ++ D   ++Q+  N++ N+I FT
Sbjct: 362 PFDFQESLEEVVSLQATSAHEKGLELTLKIDPKIPAGLVGDSLRIQQVLTNLVGNSIKFT 421

Query: 720 PSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
             G  I IS    S +E    +   VRDTG+G++  +  +  + F Q   S   R  GTG
Sbjct: 422 EHG-NIDISVEMRSQKEDVVELQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTG 480

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           LGL + + +V    G+  + S   +G+       L+ T  P
Sbjct: 481 LGLVITQKLVSQMGGEISLTSRLHQGSTFWFTLRLHSTDMP 521


>gi|27364942|ref|NP_760470.1| hybrid sensory histidine kinase BarA [Vibrio vulnificus CMCP6]
 gi|27361088|gb|AAO09997.1| BarA sensory histidine kinase (= VarS = GacS) [Vibrio vulnificus
           CMCP6]
          Length = 928

 Score =  290 bits (742), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 80/259 (30%), Positives = 135/259 (52%), Gaps = 10/259 (3%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           + + +  +L  AKK A++ +  KS+FLA +SHE+RTPL  +IGF+  +   +        
Sbjct: 269 QLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTN----S 324

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             +Y   I++S N +L+I+ND+LD SK+E+GK+ L   P    E++ E ISL    A+EK
Sbjct: 325 QTDYLQTIEKSANNLLNIINDILDFSKLEAGKLALENIPFDFRESLEEVISLQATSAHEK 384

Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT----SNEEV 737
            + I       IP  ++ D   ++Q+  N++ N+I FT  G  I +S         + ++
Sbjct: 385 GLEITLKIDPRIPEGVVGDPLRIQQVLTNLVGNSIKFTERG-NIDVSVEMRAQSGDSIDL 443

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
              V+DTG+G++  +  +  + F Q   S   R  GTGLGL + + +V    G+  + S 
Sbjct: 444 QFMVKDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSR 503

Query: 798 PAKGTLIEIIFPLYDTSHP 816
             +G+       L+ T  P
Sbjct: 504 LHQGSTFWFTLRLHSTQMP 522


>gi|37521062|ref|NP_924439.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
           7421]
 gi|35212058|dbj|BAC89434.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
           7421]
          Length = 602

 Score =  290 bits (742), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 112/598 (18%), Positives = 208/598 (34%), Gaps = 66/598 (11%)

Query: 277 TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-V 335
               +    ++    L+   ++    L+  N  +        E      V   P     V
Sbjct: 9   RAEKDMQAARKRIAQLEETCRQLQSDLARTNGKASVQVTGVLEESWRSLVQYVPDTIAAV 68

Query: 336 YSHGNLFYANPSF-----LLLTKYKSVDDI--EIAGGLSTLLDAPKLSDNNAIKPVMLYR 388
              G + +AN +        +      D +  E A  +  +      +       V    
Sbjct: 69  DRRGCILFANRALSGLCLERMIGQNLGDYLLPEHAERMGEVFARVTATGEAESCEVAAPD 128

Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM------PQNGIEPEDVDTRI 442
                    A +  +    + +  +         +  E         + G+      +  
Sbjct: 129 DHGRVFWYRASVGPVAHQGQLTSLIAVFSDITERKRSEEAFAALLQREQGLHRAIEHSER 188

Query: 443 NKRKMEIEVMQLCSILEA--------------TSDGIAI--INREG--IILSTNRAVSKL 484
             R +    + L S L+A               +DG A+  +  +G    L   RA ++ 
Sbjct: 189 RHRFLARASVVLSSSLDAETTFADLARLVVPQVADGFAVDLVEPDGALRCLVLARADAEK 248

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMN----------------------HYLTEILSLDLR 522
            G+      R+P        +  V+                        +L  +     R
Sbjct: 249 VGWARRLREREPSDPAAAWGSAQVIRTGCPQLYSAFSEALLSACAGSPEHLELLRGGSYR 308

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK-------QEKNKLSHAK 575
             +    +   +    L+  +      +         D++          +        +
Sbjct: 309 SAMVVPLVARGQTLGTLTFVLAESDRRYGPSDLSLAEDLAGRAALAFDNARLYAAEQRER 368

Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
             AE  +  K +FLA VSHE+RTPL +I+GF+++++     P    R     + I+R+  
Sbjct: 369 NRAEVANRAKDEFLATVSHELRTPLNSILGFTQLLRRHAGDP---ERLAVALDAIERNAK 425

Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695
               +  DLLD+S+I +GK+ L  +PV ++  V  AI  ++  A  K I +   +     
Sbjct: 426 AQARLTEDLLDVSRIITGKLKLTIQPVRVNALVDAAIETMRTAAEAKNIALSAIYPEAPC 485

Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755
            + AD   ++Q+  N+LSNAI FTP GG+I +S    +  +V + V D+G+G+    L  
Sbjct: 486 TLQADSNRLQQVIWNLLSNAIKFTPVGGRIRVSVERRA-GQVHIAVADSGMGIAAEFLPF 544

Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFPLYD 812
               F Q  +S      G GLGL + + +V+ + G     S  P +G    +  PL  
Sbjct: 545 VFDRFRQADSSSTRTFGGLGLGLAIVRHLVELHGGSVEAHSAGPNQGATFVVSLPLAP 602


>gi|163941246|ref|YP_001646130.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           weihenstephanensis KBAB4]
 gi|163863443|gb|ABY44502.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           weihenstephanensis KBAB4]
          Length = 510

 Score =  290 bits (742), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 99/531 (18%), Positives = 195/531 (36%), Gaps = 40/531 (7%)

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTK 353
           +S +   + +                +     +  P     +   G + + NPS   +  
Sbjct: 7   SSTQKKRHPNVSERLRNHIQNRSLAEMYASLFEHNPDSIISLNLEGVILHINPSAERILG 66

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
           Y S + +E     S L       + +    V+ Y  +         + +I       L +
Sbjct: 67  YTSNE-LERKTITSIL-------EAHISDQVLQYIKNAAADNQKEYIVSIYHKDGYLLDV 118

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
                    +         ++P +   RI ++ ++    +L +++ +    +   + EG 
Sbjct: 119 VTKLVPIFVKNRLTGVYAIMKPLEKSERI-EKVLQESEKRLRTLMNSMPAFVIFKDHEGR 177

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV----MNHYLTEILSLDLRQTLEKIT 529
            L  N      F +       K     ++ N            + E+     +    +  
Sbjct: 178 WLEANDYALSCFNFHNVPYHGKRDNELIQYNEAYRESFLHCEEVDELTWQKGQILHGEEF 237

Query: 530 LGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
           +    +  L+ L I    L           +   D++E K+ +  L  ++K+A       
Sbjct: 238 IIHRNDFDLV-LSISKVPLFHPDGSRKGLIVMGRDVTELKETEKLLRKSEKLAVV----- 291

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
               A ++HEIR PLT++ GF  ++      P  N     Y + +    + +  I +  +
Sbjct: 292 GQLTAGIAHEIRNPLTSLKGFLTLL-----HPEINEENKWYVDVMLSEISQMESITSQFM 346

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
            +SK +     L     ++   + E ++ +   A    + I     + I  I  D   +K
Sbjct: 347 AMSKPQ----VLSIHTCNVQTLIEEVVTFILPTAIMHSVHIIMDHFDYISDIQCDSNQLK 402

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           Q+ +NIL NAI   P GG I I TT   N+ V +R+ D G G+    + +  +PF     
Sbjct: 403 QVLINILKNAIEAMPDGGNIFIQTTSLENDFVSIRIMDEGCGIPEERMARLGEPFY---- 458

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
              ++ +GTGLGL +   ++  + GK +I S    GT ++I  P+  T+ P
Sbjct: 459 --SLKEKGTGLGLMMCYKIIQEHHGKLFISSELNIGTTVDIQLPIA-TAQP 506



 Score = 43.9 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 22/257 (8%), Positives = 64/257 (24%), Gaps = 16/257 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ++  G +  I+    + +G  + ++    +  + +    D            N      +
Sbjct: 48  LNLEGVILHINPSAERILGYTSNELERKTITSILEAHISDQVLQYIKNAAADNQKEYIVS 107

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           ++  +G    + +    +PI+ +NR  +G   + I+           + +  +K+   L 
Sbjct: 108 IYHKDG--YLLDVVTKLVPIFVKNR-LTGV--YAIMKPLEKSERIEKVLQESEKRLRTLM 162

Query: 209 EIKKGHSSVEKEKYDIFSQQSPP-----PHLRMKNKVSSLTEYYAHKDDVLK----TEKY 259
                    +  +                H    +          ++          E  
Sbjct: 163 NSMPAFVIFKDHEGRWLEANDYALSCFNFHNVPYHGKRDNELIQYNEAYRESFLHCEEVD 222

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
            L   +   L  +E     N            L +        +      +     ++  
Sbjct: 223 ELTWQKGQILHGEEFIIHRNDFDLVLSISKVPLFHPDGSRKGLIVMGRDVTELKETEKLL 282

Query: 320 NLTP--ETVDKCPIPFF 334
             +     V +      
Sbjct: 283 RKSEKLAVVGQLTAGIA 299


>gi|323700587|ref|ZP_08112499.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           sp. ND132]
 gi|323460519|gb|EGB16384.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           desulfuricans ND132]
          Length = 983

 Score =  290 bits (742), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 110/817 (13%), Positives = 244/817 (29%), Gaps = 111/817 (13%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGM-RLCDVSDILHIDPNNHIGDLLKR--QNTWYG 145
           +     ++  + +     G    ++ G     D              +   R   +    
Sbjct: 171 LGKDATIRRCNSQFCLMSGCTREEIEGKLGWTDFVPPDEQKRMERFQEDRARKIGHPPSD 230

Query: 146 -KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            + T    +G    + + +  +P                +      ++     ++ ++++
Sbjct: 231 YEFTFLTRDGVRRRIHLFVRNVPDTDDR--------VCSLIDVTERDEALHALRKSEERY 282

Query: 205 SHLHEIKKGHSSVEKEKYD--IFSQQSPPPHLRMKNKVSSLTEY-----YAHKDDVLKTE 257
             +               D   +S +        + +  +  +      +    +     
Sbjct: 283 QLMARGANDGLWDWYLASDECFYSPRYREILGYTEEEFPNCVDSWLKSLHPDDRERAMAA 342

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN----SKESFEYLSHRNHPSLSA 313
               +  E      +      + +        G+  +      + S  +           
Sbjct: 343 NMRCIEGEIEQFQVEFRQIHKDGSIRWILGRGGSTLDENGKVYRLSGTHTDITQRKQAED 402

Query: 314 YFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
              E E      ++      F  S  G     NP+   +  Y S +D+   G +  +   
Sbjct: 403 ALRESEERFRLMIEHASSGIFQASPEGRFLTVNPALARMLGYDSPEDM--VGNVGDIGTD 460

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
             ++D +    +    +              +     ++ +         Q        G
Sbjct: 461 ILINDADRQAFLDGIYAQGELQNYEYHC---RRKDGGAIWLAGNTRMVRAQDGAVAYFEG 517

Query: 433 IEPEDVDTRINKR----------------KMEIEVMQLCSILEATSDG----IAIINRE- 471
              +    ++N+R                 +      + +I+    +     IA+++ + 
Sbjct: 518 FLQDITARKLNERTTHALYAISTAVNTTRNLRDLYQTIHAIIGEVIEARNFFIAMLDEKN 577

Query: 472 --GIILSTNRAVSKLFGYPVEDILR---------KPFTVFLEQNTPSVMNHYLTEILSLD 520
                +     +   F  P               +             +   L  I  + 
Sbjct: 578 DMLRFVYFQDEMDDYFDIPNISDPGQSSLTIHVFRTAAPLYLSQADPGIEERLAAIGVIG 637

Query: 521 LRQTLEKITLGSTKEEKL----LSLRIIIKKLPFSSCYSLT------------------- 557
                         E  +    +      ++    +   LT                   
Sbjct: 638 TPPAAWLGVPLRQGERVVGAMAVQDYANPRQYSDEAATFLTAVSEQVAMAIERKTIEEAL 697

Query: 558 ------MHDISEWKQEK-----NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
                 + D  E +  +      +L  A +        KS  ++ VSHE+RTPLT+I GF
Sbjct: 698 TRLNEELEDKVEQRTAEIEARKAELEEANRRLMTLDEIKSSMVSSVSHELRTPLTSIRGF 757

Query: 607 SE-----------VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           ++            +           R       ID  G  +  ++ND LDI++IESGK 
Sbjct: 758 AKLCAKDFTRHFLPLARGEQLSAKGRRIQGNLGIIDTEGERLTRLINDFLDINRIESGKA 817

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKR-ILIRTSFANNIPRILADLRSVKQIALNILSN 714
             + + ++    + EA++      N  R + + T     + RI AD   +KQ+ +N+L+N
Sbjct: 818 CWNDDTLNPTRVIREAVASASGGFNASRSVELVTVLPETVRRIKADPDKIKQVLINLLNN 877

Query: 715 AIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG--QIPNSQQIRGE 772
           A  FT  G ++ ++      E + + V DTG G+   EL    + F   ++ ++ +   +
Sbjct: 878 AYKFTRQG-RVTVAL-LEHAESLTVSVVDTGSGIPEDELNYIFEKFHKSRLGDTVRNEAQ 935

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GTGLGL + K +V+   G   + ST  +G++     P
Sbjct: 936 GTGLGLAICKEIVEHYGGTIRVQSTLGRGSVFTFTLP 972



 Score =  159 bits (403), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 50/521 (9%), Positives = 135/521 (25%), Gaps = 33/521 (6%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKM-IGMRLCDVSDILHIDPNN-HIGDLLKRQNT 142
           F + ID     +  ++   +T G     +   + L  +     I     ++  +L  ++ 
Sbjct: 41  FIFEIDRDEIFRYANKHALETFGYDEEDLRTDLPLTAIIHPDSIRRARLNLARVLNGEDF 100

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
            + +      +G+   VPI     P+  R+ +  G RG  I              +  + 
Sbjct: 101 EHEEYMAMRKDGS--VVPIKTYTQPVR-RDGQVVGLRGVVI--DVSEIRQVEDALRSSET 155

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQS-----PPPHLRMKNKVSSLTEYYAHKDDVLKTE 257
            +  L E       +  +   I    S                   T++    +      
Sbjct: 156 HYRILFETTGTAMVLLGKDATIRRCNSQFCLMSGCTREEIEGKLGWTDFVPPDEQKRMER 215

Query: 258 KYPLLT--SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
                           +  F T +  +     +   + +        +            
Sbjct: 216 FQEDRARKIGHPPSDYEFTFLTRDGVRRRIHLFVRNVPDTDDRVCSLIDVTERDEALHAL 275

Query: 316 DEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
            + E              +  Y   +  + +P +  +  Y   +       + + L +  
Sbjct: 276 RKSEERYQLMARGANDGLWDWYLASDECFYSPRYREILGYTEEEF---PNCVDSWLKSLH 332

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
             D        +   +            I  +  +   +        ++  +    +G  
Sbjct: 333 PDDRERAMAANMRCIEGEIEQFQVEFRQIHKDG-SIRWILGRGGSTLDENGKVYRLSGTH 391

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
            +    +  +  +     +   ++E  S GI   + EG  L+ N A++++ GY   + + 
Sbjct: 392 TDITQRKQAEDALRESEERFRLMIEHASSGIFQASPEGRFLTVNPALARMLGYDSPEDMV 451

Query: 495 KPF-----TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
                    + +           +         +          K+   + L    + + 
Sbjct: 452 GNVGDIGTDILINDADRQAFLDGIYA-----QGELQNYEYHCRRKDGGAIWLAGNTRMVR 506

Query: 550 FSSCYSLTM----HDISEWKQEKNKLSHAKKIAEKESSHKS 586
                         DI+  K  +        I+   ++ ++
Sbjct: 507 AQDGAVAYFEGFLQDITARKLNERTTHALYAISTAVNTTRN 547



 Score = 97.0 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/304 (10%), Positives = 89/304 (29%), Gaps = 34/304 (11%)

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNL-FYANPSFLLLT 352
           +  K   E ++  +           +   P   D+ P+  F      +  YAN   L   
Sbjct: 4   DERKTKAELIAELDDLRARFDSVRDQA-WPPIADEFPLFIFEIDRDEIFRYANKHALETF 62

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNN------------AIKPVMLYRSDRTCIAASARL 400
            Y   +D+     L+ ++    +                  +  M  R D + +      
Sbjct: 63  GY-DEEDLRTDLPLTAIIHPDSIRRARLNLARVLNGEDFEHEEYMAMRKDGSVVPIKTYT 121

Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
             ++ +                   + +   G+  +  + R  +  +         + E 
Sbjct: 122 QPVRRDG------------------QVVGLRGVVIDVSEIRQVEDALRSSETHYRILFET 163

Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520
           T   + ++ ++  I   N     + G   E+I  K                   E  +  
Sbjct: 164 TGTAMVLLGKDATIRRCNSQFCLMSGCTREEIEGKLGWTDFVPPDEQKRMERFQEDRARK 223

Query: 521 LRQT-LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579
           +     +      T++     + + ++ +P +     ++ D++E  +  + L  +++  +
Sbjct: 224 IGHPPSDYEFTFLTRDGVRRRIHLFVRNVPDTDDRVCSLIDVTERDEALHALRKSEERYQ 283

Query: 580 KESS 583
             + 
Sbjct: 284 LMAR 287


>gi|310817666|ref|YP_003950024.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309390738|gb|ADO68197.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 1142

 Score =  290 bits (742), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 98/681 (14%), Positives = 223/681 (32%), Gaps = 65/681 (9%)

Query: 184 VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL 243
             +  +     A+                 +  +   K                  V   
Sbjct: 317 ARLEELVMCAPAVVSVTRGSGHRYVLCNPRYRQLLGGKDLTGMSAREAVPTLDGQGVFEA 376

Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF-EY 302
            +      +   ++++P+    +S +P +  F  ++      +     +   + +   + 
Sbjct: 377 MDRVYETGEPFISKEFPVRLGPKSDVPSEAFFDFVHQPLRDSEGRVEGIATFAFDVTDQV 436

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEI 362
           L+ R    L       E      +       +       F ++         ++ +++  
Sbjct: 437 LARRTVEELLRDMARSEERFRAFLTATSEIIWDMPPRGGFDSDQPGWRAFTGQTREELLG 496

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
            G L+ +    +L    A +  +             RL   + +      M         
Sbjct: 497 WGWLNAVHPEDRLGTELAWREAV---KAGKLFQNEVRL---RRHDGMYRHMHMRAVPVLE 550

Query: 423 QFPENMPQNGIEPEDVDTRI---NKRKMEIEVMQLCSILEATS------------DGIAI 467
                    GI  +    R     + ++     +  + L+  +            D + +
Sbjct: 551 LDGTVREWVGIHRDITRQREDEVERARLLSREQRHRAQLQGLAAASLAIGQAASLDAVLL 610

Query: 468 I----------------------NREGII--LSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
           +                      +    I  +S +   S+  GY         F+  + +
Sbjct: 611 VITEEARELIGAHQSVTSLTTGEDGAQSISAVSLSEKYSQYRGYSP-RADGWGFSAQVCR 669

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL-LSLRIIIKK--------LPFSSCY 554
               +           + R   +           L + L                    +
Sbjct: 670 TNQPLRMAQPELEAHPEWRSIGQSEAEHPPPRGWLAVPLVGSSGSNLGLIQLSDRHEGDF 729

Query: 555 SL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
           +      +  ++       + +     ++  +  K +FLA +SHE+RTPLTA++G+++++
Sbjct: 730 TAEDEAILVQLARMASVAIENARLMAESQAANRAKDEFLAVMSHELRTPLTAVLGWTQML 789

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
           + +R  P    +     + I+R+   +  ++ D+LD+S+I +GK+ LH   V L   V  
Sbjct: 790 RTRRNDPAIQEKG---LDVIERNARSLAQLIEDVLDVSRILTGKLALHQRAVDLASVVQA 846

Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
           A+ +V+  A +K + +          +  D   ++Q+  N+L NA+ FTPSGG++ +   
Sbjct: 847 AVEVVRPRAEQKGVTLVMEAGVGGGMVTGDPGRLQQVFWNLLVNAVKFTPSGGRVEVRVE 906

Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
              N E  + ++D+G G+    L    + F Q   S      G GLGL + + +V+ + G
Sbjct: 907 -RGNAEWRVWIKDSGQGIRVEALPHLFERFWQADGSSTREHGGLGLGLAIVRHLVELHGG 965

Query: 791 KFYIFST-PAKGTLIEIIFPL 810
           +    S     G+   +  P+
Sbjct: 966 EVEAESAGLGHGSTFTVRLPV 986



 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/514 (8%), Positives = 114/514 (22%), Gaps = 88/514 (17%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D    +  ++      IG     ++G  L      L   P                 T 
Sbjct: 30  LDRDWRITTLNGAAEGIIGRSRELLVGQNLWTALPELAPTPLGAAFHAAHASGERSTHTG 89

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
            +   G       +   +P           +  GIV   R  +          +  +   
Sbjct: 90  HYAPFG----AWFEARIIP-----------QDTGIVAFIRDVSPLHEAELERVRLVAAER 134

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
              +           +    +     R  ++V+   +  A     +      +    E+ 
Sbjct: 135 AAYERAERAAHRLTRLQEFTARLSAARSPDEVT--QQTVACTMAAVGATMAMVGVPTETL 192

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
              +         Q  ++     L +    S  +            F        +T+  
Sbjct: 193 RTLRVAACQGLPPQLLRECQVLPLDSILPMSVAFRGEPEWIESPEEFSARYPQLAKTM-- 250

Query: 329 CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388
                                                  +L   P + +   +  + L  
Sbjct: 251 --------------------------------GEDAAARSLASLPLVVEERVLGVLTLCY 278

Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
            +     A  R   +   R ++LA+                         D      + E
Sbjct: 279 PEPRTFPAEEREFLLALARHSALAL-------------------------DRARLLAEGE 313

Query: 449 IEVMQLCSILEATSDGIAIINREG-IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
            +  +L  ++      +++    G   +  N    +L G   +D+        +      
Sbjct: 314 TQRARLEELVMCAPAVVSVTRGSGHRYVLCNPRYRQLLG--GKDLTGMSAREAVPTLDGQ 371

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI----IIKKLPFSSCYS----LTMH 559
            +   +  +        + K        +  +        + + L  S            
Sbjct: 372 GVFEAMDRVYETGEP-FISKEFPVRLGPKSDVPSEAFFDFVHQPLRDSEGRVEGIATFAF 430

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
           D+++    +  +    +   +       FL   S
Sbjct: 431 DVTDQVLARRTVEELLRDMARSEERFRAFLTATS 464



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 18/115 (15%), Positives = 42/115 (36%), Gaps = 7/115 (6%)

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           +LE+ +D + +++R+  I + N A   + G   E ++ +     L +  P+ +       
Sbjct: 19  LLESLTDAVLVLDRDWRITTLNGAAEGIIGRSRELLVGQNLWTALPELAPTPLGAAFHAA 78

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571
            +   R T                 RI    +P  +     + D+S   + + + 
Sbjct: 79  HASGERSTHTG---HYAPFGAWFEARI----IPQDTGIVAFIRDVSPLHEAELER 126



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/243 (7%), Positives = 46/243 (18%), Gaps = 15/243 (6%)

Query: 93  GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGKT---T 148
                 +    + +G     + GM   +    L        +  + +    +  K     
Sbjct: 338 HRYVLCNPRYRQLLGGK--DLTGMSAREAVPTLDGQGVFEAMDRVYETGEPFISKEFPVR 395

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI-----VHVNRVDNDPRALGKRLDKK 203
           L P          D    P+        G   F       V   R   +      R +++
Sbjct: 396 LGPKSDVPSEAFFDFVHQPLRDSEGRVEGIATFAFDVTDQVLARRTVEELLRDMARSEER 455

Query: 204 FSHLHEIKKGHSSVEKE----KYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
           F                      D    ++     R +            +D +     +
Sbjct: 456 FRAFLTATSEIIWDMPPRGGFDSDQPGWRAFTGQTREELLGWGWLNAVHPEDRLGTELAW 515

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
                       +      +            +        E++      +     +   
Sbjct: 516 REAVKAGKLFQNEVRLRRHDGMYRHMHMRAVPVLELDGTVREWVGIHRDITRQREDEVER 575

Query: 320 NLT 322
              
Sbjct: 576 ARL 578



 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/390 (8%), Positives = 88/390 (22%), Gaps = 15/390 (3%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH-IDPNNHIGDLLKRQNTWY 144
            W++   G             G    +++G    +       +       + +K    + 
Sbjct: 467 IWDMPPRGGFDSDQPGWRAFTGQTREELLGWGWLNAVHPEDRLGTELAWREAVKAGKLFQ 526

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            +  L   +G   ++   + A+P+   +         GI        +      RL  + 
Sbjct: 527 NEVRLRRHDGMYRHM--HMRAVPVLELDGTVR--EWVGIHRDITRQREDEVERARLLSRE 582

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQ--------QSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256
                  +G ++         S         +     +     V+SLT        +   
Sbjct: 583 QRHRAQLQGLAAASLAIGQAASLDAVLLVITEEARELIGAHQSVTSLTTGEDGAQSISAV 642

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYT-KKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
                 +      P  + +        T +       +  +   +  +            
Sbjct: 643 SLSEKYSQYRGYSPRADGWGFSAQVCRTNQPLRMAQPELEAHPEWRSIGQSEAEHPPPRG 702

Query: 316 DEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
                L   +     +   +       +      +L +   +  + I             
Sbjct: 703 WLAVPLVGSSGSNLGL-IQLSDRHEGDFTAEDEAILVQLARMASVAIENARLMAESQAAN 761

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
              +    VM +       A       ++  R +                          
Sbjct: 762 RAKDEFLAVMSHELRTPLTAVLGWTQMLRTRRNDPAIQEKGLDVIERNARSLAQLIEDVL 821

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGI 465
           +       K  +    + L S+++A  + +
Sbjct: 822 DVSRILTGKLALHQRAVDLASVVQAAVEVV 851


>gi|311278812|ref|YP_003941043.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Enterobacter cloacae SCF1]
 gi|308748007|gb|ADO47759.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Enterobacter cloacae SCF1]
          Length = 612

 Score =  290 bits (742), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 102/596 (17%), Positives = 222/596 (37%), Gaps = 48/596 (8%)

Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303
                 + +   +    LL              + +            +      +F  +
Sbjct: 44  RAAVLSEKEQKLSAVVHLLDDALGERFSHYSTLSRDERIRKLNAELAPITERITRAFPGI 103

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG---NLFYANPSFL----------- 349
                   +   D     +P  + +  +   +        +   N   +           
Sbjct: 104 G---AGYYNKALDAIITYSPSALYQNNVGVTIADDHPGREVMRTNAPVVFSGRQVRGDIL 160

Query: 350 -LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
             +       ++      + L +  +         ++   +     +    +   +    
Sbjct: 161 NSMIPITRRGEVIGYIWANELTEDIRRQAWKMDIRIIAVLAAGLLCSLLLIVLFSRRLSA 220

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK--RKMEIEVMQLCSILEATSDGIA 466
           N   +T      A + P  +P    E   +   +N   + ++        I+E  +DG+ 
Sbjct: 221 NIDIITDGLPTLAQKTPAQLPDLPGELGQISRSVNALAQTLQETKTLNDLIIENAADGVI 280

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
            ++R+G + + N A   + GY +++++ +P+         S     + + L+      L 
Sbjct: 281 AVDRQGDVTTMNPAAEAITGYTLDELVGQPYATLFADTHFSS---PILDTLAHGTEH-LA 336

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKES 582
           +      ++ + + L +   ++  +S       +   D++  K+ + +L+  +++A    
Sbjct: 337 QEVSFPGRD-RTIELSVTTSRIHNASGELIGALVIFSDLTARKETQRRLAQTERLAT--- 392

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
               + +A V+HE+R PLTAI G+ ++I+ Q   P     + EY + +    + +  ++ 
Sbjct: 393 --LGELMAGVAHEVRNPLTAIRGYVQIIRQQTTLPA----HQEYLSVVLNEIDSINKVIQ 446

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702
            LLD S+    +    ++ V L+  + EA+ LVQ    + RI   T    ++P I+AD  
Sbjct: 447 QLLDFSRPRQSQ----WQQVQLNALIGEALILVQTSGVQARIDFNTELDADLPTIVADRE 502

Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
            +KQ+ LNIL NA+    + G I I T   +   + + + D G G+     +K   PF  
Sbjct: 503 LLKQVLLNILINAVQAIGARGSIRIRTWRETATHLAIAIEDNGGGIDIALQKKIFDPFFT 562

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
              S      GTGLGL L++ +++A+ G   + STP  G    +I P+       +
Sbjct: 563 TKAS------GTGLGLALSQRIINAHQGDIRVTSTPGCGATFTLILPINPQETSSE 612



 Score = 45.8 bits (107), Expect = 0.031,   Method: Composition-based stats.
 Identities = 22/242 (9%), Positives = 58/242 (23%), Gaps = 5/242 (2%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D  G +  ++       G    +++G     +    H      I D L        +  
Sbjct: 282 VDRQGDVTTMNPAAEAITGYTLDELVGQPYATLFADTHFSSP--ILDTLAHGTEHLAQEV 339

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGF-RGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
            +P     + + +  +   I++ + E  G    F  +   +      A  +RL      +
Sbjct: 340 SFPGRDRTIELSVTTS--RIHNASGELIGALVIFSDLTARKETQRRLAQTERLATLGELM 397

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
             +     +                 L    +  S+        + +  +        +S
Sbjct: 398 AGVAHEVRNPLTAIRGYVQIIRQQTTLPAHQEYLSVVLNEIDSINKVIQQLLDFSRPRQS 457

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
              + +    I       +      + +     +                  N+    V 
Sbjct: 458 QWQQVQLNALIGEALILVQTSGVQARIDFNTELDADLPTIVADRELLKQVLLNILINAVQ 517

Query: 328 KC 329
             
Sbjct: 518 AI 519


>gi|153954091|ref|YP_001394856.1| sensor kinase [Clostridium kluyveri DSM 555]
 gi|219854704|ref|YP_002471826.1| hypothetical protein CKR_1361 [Clostridium kluyveri NBRC 12016]
 gi|146346972|gb|EDK33508.1| Predicted sensor kinase [Clostridium kluyveri DSM 555]
 gi|219568428|dbj|BAH06412.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 437

 Score =  290 bits (742), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 86/377 (22%), Positives = 181/377 (48%), Gaps = 21/377 (5%)

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKL---FGYPVEDILRKPFTVFLEQNTPSVM 509
           QL  I++   D   + N+EG I+  N    KL                  + + +   ++
Sbjct: 22  QLEDIIQNLPDAFFVYNKEGYIVLLNAMARKLYPQLNAQKTIEEAHSCLQYYDLDNNIIL 81

Query: 510 NHYLTEILS-LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM--HDISEWKQ 566
                   +    +   E++ +    + +++ +         ++   +    HD+SE  +
Sbjct: 82  PDNFPTRRAFKGKKVKNERVVIKRCHKIQIIEVNATPIFDEENNLVYVVASHHDVSELIK 141

Query: 567 EKNKLSHAKKIA-----------EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
            + ++   ++             E+    K +F   ++HE +TP++ I    + I +  +
Sbjct: 142 NQEEIKAQQEKLLNAEKSRNEILEEAIKSKEEFFYLMTHEFKTPISVINLALQAI-DLMY 200

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
                 +  +Y N I ++ N  L +VN+LLDI++I+SG + ++    S+   +   ++ V
Sbjct: 201 KKEITEKVNKYLNTIKQNVNRQLRLVNNLLDIARIDSGHLKMNKSCFSIIHVIEAIVNSV 260

Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT---HT 732
           QLYA +K ++++ +   +   I +D   +++I LN+LSNA+ FTPSG  II++ +   + 
Sbjct: 261 QLYAKQKNVILKFNTNLSKKNIYSDEEKLERILLNLLSNALKFTPSGKSIIVTLSTKKYK 320

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
           + E + + V+D G+G+   + +   + FGQ+ +S   + EGTGLGL L K +V++  G+ 
Sbjct: 321 NGEMISISVQDEGMGIPLDKQKTIFERFGQVDSSLSDQAEGTGLGLHLVKLLVNSLDGEI 380

Query: 793 YIFSTPAKGTLIEIIFP 809
            + ST  +G++  ++ P
Sbjct: 381 LLNSTVGEGSIFTVLLP 397


>gi|226942490|ref|YP_002797563.1| hybrid sensory histidine protein kinase [Azotobacter vinelandii DJ]
 gi|226717417|gb|ACO76588.1| hybrid sensory histidine protein kinase [Azotobacter vinelandii DJ]
          Length = 957

 Score =  290 bits (742), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 103/567 (18%), Positives = 203/567 (35%), Gaps = 24/567 (4%)

Query: 259 YPLLTSEESSLPEQE-DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
             L    E+     E   H+ +   +++           + +   L+             
Sbjct: 275 MALPEPGEADFGLDELTSHSYDEAIHSELFKPEDFNLRRRPATAGLAAAIVERNEGMMTV 334

Query: 318 GENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
                P  V    IP   +    +      F       S  +      ++ LL    +  
Sbjct: 335 EFRGRPSLVAWTTIPQTGWHLLTVVDEARVFAETNSLASQYERIGYLMIAGLLVFYLV-- 392

Query: 378 NNAIKPVMLYRS---DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
                 + L      +R           ++     +      P   +++  E     G  
Sbjct: 393 --FFGCMWLRARHLSERLLRPIDGISRMMEEIGGGNW----RPARVSSRIVELDAMAGHA 446

Query: 435 PEDVDTRIN-KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
               +     +R+ +    +L  +L++ ++ +   +     +S      K FG P   I 
Sbjct: 447 ERMGEQLEQSERQSQRTQERLELVLDSATESLWEQDLHSRRISLRGRFCKRFGLPAGPID 506

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII---IKKLPF 550
            + F   +       +       L+       E              L      +++ P 
Sbjct: 507 HEAFMAHVHPEDVPRVEASFR--LADSRSGLCEADFRFRDSHGSYHWLLGRGRVVERDPA 564

Query: 551 SSCYSLTM---HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
           +    L      DI   K+ +  L  A   A+  S  KS F++ +SHE+RTPL AI GF+
Sbjct: 565 TGQAVLLAGTHVDIDTLKRTEADLRLAIGEAQAASQAKSRFISSISHELRTPLNAIYGFA 624

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
           + +    +   G  + + Y + + R+   +  +V+D+LD S +++ K +L  + V +   
Sbjct: 625 Q-LLRLGYEARGETQEVAYLDELLRASRHLNQLVDDVLDWSNLQTAKFSLEMQSVEVAGL 683

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727
           ++E   +V+L    + + +     +    + AD R ++Q+ LN+LSNAI +    G+I +
Sbjct: 684 MAECAEMVRLDVETRGLRLDLEPPDKGLLVRADPRRLRQVLLNLLSNAIKYNSPAGRIAL 743

Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
            T    +  + L V DTG G+      +  +PF ++   +    +GTG+GL L +     
Sbjct: 744 -THQAESGRIRLIVEDTGPGIDESRQVQLFEPFQRL-GRENSTIQGTGIGLSLCRQFAVL 801

Query: 788 NMGKFYIFSTPAKGTLIEIIFPLYDTS 814
             G+  + S P  G+   I  PL    
Sbjct: 802 MGGRMGMSSEPGTGSRFWIDLPLVQDE 828


>gi|311067401|ref|YP_003972324.1| signal transduction histidine kinase with CheB and CheR activity
            [Bacillus atrophaeus 1942]
 gi|310867918|gb|ADP31393.1| signal transduction histidine kinase with CheB and CheR activity
            [Bacillus atrophaeus 1942]
          Length = 1182

 Score =  290 bits (742), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 97/584 (16%), Positives = 200/584 (34%), Gaps = 48/584 (8%)

Query: 236  MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN 295
            M ++ S+  +     +  L   K  L T+ E      E+  + N       +   +    
Sbjct: 637  MFDEDSAYHQRILDLEKELYETKQHLQTAIEKLETSNEELQSTNEELIAANEELQSTNEE 696

Query: 296  SKESFEYLSHRNHPSL---SAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLT 352
             +   E L   N               ++    ++      F+    ++    P    + 
Sbjct: 697  MQSVNEELMTVNQQFEKKIEELTAMTTDMDNLLINTNIATIFLDEQCHIKLFTPEAENVF 756

Query: 353  KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
                 D       +S+ L      ++     + L   D+  I          W       
Sbjct: 757  HLIERDIGRPIYHISSRLKYENYFED-----IQLTLKDKRFIQKEVEAQNGDW------- 804

Query: 413  MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG 472
                         +            D +   + ++I        +E +   I I   +G
Sbjct: 805  YNVKMMPYYTNENKVEGVVITFVNITDLKSTNKALQISSE----AVEQSPANILIAAADG 860

Query: 473  IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
             I   N+   ++ G    +I+ +      +Q             +  + R +        
Sbjct: 861  QIKYVNKRFCEMIGKEQYEIIGENVFELYDQYFQLSELSSHWHSIPENNRWSG--ELYYQ 918

Query: 533  TKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
             K+       + +  +   S           DI+  KQ +  L     +  +  S     
Sbjct: 919  DKDGLDRWEYVTLLPVKDDSGQVGRIMRIAEDITNQKQSEKML-----MKSEMLSAIGQL 973

Query: 589  LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
             A ++HEIR PLT++ GF +++   +          +YA  +      +  I+N+ L +S
Sbjct: 974  AAGIAHEIRNPLTSLKGFLQLMIQSK------KYQKDYAEVMMSEFVRLESIINEFLVLS 1027

Query: 649  KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIA 708
            + +S    + FE + +++ V +   +++  A  K + +  +  + +P I      +KQ+ 
Sbjct: 1028 RSKS----VQFETIQINDIVEDVSLILESQAMLKGVRVIKNLNDKLPDIKGVPNELKQVF 1083

Query: 709  LNILSNAIHFTPS-GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
            LN+L NAI       G I I T +  N  + L   D G G++   +E+  +PF       
Sbjct: 1084 LNVLKNAIESMEQIEGDIHIHTVYQ-NGYIQLTFEDQGKGISKEMMERLGEPFYTT---- 1138

Query: 768  QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
              + +GTGLGL ++  +++++ G     S   +GT + I  P+ 
Sbjct: 1139 --KEKGTGLGLMVSFKIIESHKGTIEFESIENQGTKVTIKLPVS 1180



 Score = 57.7 bits (138), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 17/112 (15%), Positives = 42/112 (37%), Gaps = 5/112 (4%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI-LHIDPNNHIGDLLKRQNTWYGKTTL 149
           A G +K +++   + IG   +++IG  + ++ D    +   +     +   N W G+   
Sbjct: 858 ADGQIKYVNKRFCEMIGKEQYEIIGENVFELYDQYFQLSELSSHWHSIPENNRWSGELYY 917

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
              +G + +  + L  LP+   + +    R   I            +  + +
Sbjct: 918 QDKDGLDRWEYVTL--LPVKDDSGQVG--RIMRIAEDITNQKQSEKMLMKSE 965


>gi|260775203|ref|ZP_05884101.1| BarA sensory histidine kinase [Vibrio coralliilyticus ATCC BAA-450]
 gi|260608904|gb|EEX35066.1| BarA sensory histidine kinase [Vibrio coralliilyticus ATCC BAA-450]
          Length = 927

 Score =  290 bits (742), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 84/340 (24%), Positives = 154/340 (45%), Gaps = 17/340 (5%)

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
           F Y +   + +P +        ++++      L + +   +             +++ + 
Sbjct: 191 FAYRLMHDVTRPISHM-----KNMVDRIRRGHLDVRIEGKMHGELDSLKNGINAMAVSLS 245

Query: 545 IKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
              +           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTPL
Sbjct: 246 EYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPL 305

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
             +IGF+  +   +          +Y   I++S N +L+I+ND+LD SK+E+GK+ L   
Sbjct: 306 NGVIGFTRQMLKTKLTN----SQADYLQTIEKSANNLLNIINDILDFSKLEAGKLALENI 361

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFT 719
           P    E + E +SL    A+EK + +       IP  ++ D   ++Q+  N++ N+I FT
Sbjct: 362 PFEFQETLEEVVSLQATSAHEKGLELTLKVDPKIPAGLVGDPLRIQQVLTNLVGNSIKFT 421

Query: 720 PSGG---QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
             G     + + +      E+   VRDTG+G++  +  +  + F Q   S   R  GTGL
Sbjct: 422 ERGNIDISVELRSQKEDAVELQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGL 481

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           GL + + +V    G+  + S   +G+       L  T  P
Sbjct: 482 GLVITQKLVSQMGGEISLTSRLHQGSTFWFTLRLNSTDMP 521


>gi|253567089|ref|ZP_04844540.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|251944213|gb|EES84722.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
          Length = 1022

 Score =  290 bits (742), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 124/741 (16%), Positives = 241/741 (32%), Gaps = 49/741 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGN-YAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQNTW 143
            W  D    L     E     G      +                   I  D+L   +  
Sbjct: 156 LWEFDVCTRLFYA--ENEPLNGYDPTQALTIEDYKKQIHPEDWKKAEIILLDMLSGCDCL 213

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPI-YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
           Y       +  T+ +    L   P     + +   + GF      R +N      K L +
Sbjct: 214 YEIDFRIRLSDTSEWQYCKLNCTPYERGTDGKVIKYVGF------RKNNTELQRRKLLQE 267

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
              +   +      VE +   +F  +            +  +   + + + ++     + 
Sbjct: 268 NILNSIPLPIHIKDVEDDFRYVFCNEESMRMFGTHEGETVCSVLDSEQAERMQKTDLEVF 327

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
           T+ +     +     I  +  +                  L+ R    L         + 
Sbjct: 328 TTGKPYFGVE---RIILKDGRSYDTIVRKNIIYDGTKRLLLNIRWDQKLQNDLKRRAKVL 384

Query: 323 PETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
             +++      + Y       +           ++D    +         P         
Sbjct: 385 SMSMEVMNAYTWFYEPSKQRVSFGEGFDKIGRNALDI--NSFEKFAGCVHPDDRQRFVDT 442

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
              + + D        R                +              +G+       + 
Sbjct: 443 MDAVLKQDSGEWDIEYRADLRGNGNYEWWKTRGVLETSILNDHPYQYVSGMSISIESYKQ 502

Query: 443 NKRKMEIEVMQL-------CSILEATSDGIAIINREGIILSTN----RAVSKLFGYPVED 491
            +  +     +L         +L  T+ G+A I  + ++   N     +      Y   +
Sbjct: 503 TELTLLKNKEKLNKLIRQNELVLNNTNSGLAYITTDYVVQWENVSVCSSSLSFEAYKRGE 562

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
              K            V++  L       ++  LE          +++ +          
Sbjct: 563 CCYKSAHNRTSPCDNCVLSKVLVSRQMEKIKFHLE--------NNRIVEVLATPVFNESE 614

Query: 552 --SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                 + + DI++ ++   +L  AK +AE+    KS FLA +SHEIRTPL AI+GFS++
Sbjct: 615 EIDGIVIRVDDITDRERMIEELRQAKLLAEQSDKLKSAFLANMSHEIRTPLNAIVGFSDL 674

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           + N            EY   I+ +  L+L ++ND+LD+SK+ESG + L +E   L E   
Sbjct: 675 LMNSEEQGDKE----EYMQIINTNNELLLKLINDILDLSKLESGSVELKYEEFDLAEYFD 730

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
              S ++      ++ +      ++ R+  D   V Q+  N ++NAI +TP G    I  
Sbjct: 731 SMASSMKQRVTNPKVQLVAVNPYSVCRVRLDKNRVAQVVTNYVTNAIKYTPQG---TIEM 787

Query: 730 THT-SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
            +   +  + L VRDTG+G+   +  K    F ++        +GTGLGL + KA+ ++ 
Sbjct: 788 GYEVVDTGIRLYVRDTGIGIPEEKKRKVFHRFEKLD----EFAQGTGLGLSICKAITESM 843

Query: 789 MGKFYIFSTPAKGTLIEIIFP 809
            G     S  ++G+L   + P
Sbjct: 844 GGSVGFESEYSRGSLFWAVLP 864



 Score = 44.6 bits (104), Expect = 0.061,   Method: Composition-based stats.
 Identities = 19/143 (13%), Positives = 46/143 (32%), Gaps = 10/143 (6%)

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRKPFTVFLEQNTPSVMNHYL 513
            +I E    G+ + + +G ++  N    K+ G    +D+L          N P  M   L
Sbjct: 16  QTIYENLPVGMELYDGDGYLIEINSVGLKMMGVKDKQDMLGINIFE--NPNIPVEMKRRL 73

Query: 514 TEILSLDLRQTLEKIT-------LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQ 566
               ++      +          + S      +++ +++ +      +     D++E   
Sbjct: 74  RAGENIRFTVKYDFDLAKAHYPTVLSGISYFEITVSVVLDENKEIDKFLFIAQDVTEAVH 133

Query: 567 EKNKLSHAKKIAEKESSHKSDFL 589
            +  L  +K+            L
Sbjct: 134 TQEILRQSKQKTALAMQAAEVML 156


>gi|227537041|ref|ZP_03967090.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227243133|gb|EEI93148.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 437

 Score =  290 bits (742), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 84/385 (21%), Positives = 159/385 (41%), Gaps = 31/385 (8%)

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
           Q  +  E    +  + K++  V  L S LE+        N EG I   N    K F Y +
Sbjct: 79  QQALISEIETRKKAETKLKERVDHLHSTLESLPQIAFTANAEGQIEFVN---EKWFKYSI 135

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI-IIKKL 548
                        +  P   N     +L++     LE        +  +    +  I  +
Sbjct: 136 S-------AETFPKTHPDDKNIRDEWLLAMGSGNALELEVRIKEIDADIFRFHLLRIIPI 188

Query: 549 PFSSC---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
                   +  T  DI + KQ + K              K +FL+  SHE++TPLT+I  
Sbjct: 189 REQEVIVKWVGTFTDIDDQKQIEKK--------------KDEFLSIASHELKTPLTSIKA 234

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
           + + +  +      +    +Y N +    + +  ++ DLLDISKI++GK+ ++ +  + +
Sbjct: 235 YIQ-LLERTLNAEHSSSTSKYLNTVQNQVSKLNSLIADLLDISKIDNGKLKMNKKLFNFE 293

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725
             +S  +  +        I I          +L D   ++Q+ +N L+NAI ++P   ++
Sbjct: 294 NLLSNVVDTIYHTHENSNIRIEREGDAIDQPVLGDEIRIEQVLINYLTNAIKYSPDSKRV 353

Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
           II T    N ++ + V D G+G+  ++ +     F ++  S  ++ +G G+GL +   ++
Sbjct: 354 IIKTE-QENTQIKVDVTDFGIGIPEHKQKNIFNKFYRVEES-SLKFQGLGIGLYICSEII 411

Query: 786 DANMGKFYIFSTPAKGTLIEIIFPL 810
             + G F I S   +G+      PL
Sbjct: 412 RQHNGTFGIQSQTGQGSTFYFTIPL 436


>gi|171910825|ref|ZP_02926295.1| two-component hybrid sensor and regulator [Verrucomicrobium
           spinosum DSM 4136]
          Length = 772

 Score =  290 bits (742), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 88/640 (13%), Positives = 198/640 (30%), Gaps = 60/640 (9%)

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
           L  +   + E                   +     R    +   +      D  L+    
Sbjct: 27  LVTEADPIEEPGPRIVFANDAFLRRTGYTASEVLGRSPRFLQGPSTSREALDQ-LRAGLV 85

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGT------LQNNSKESFEYLSHRNHPSLSA 313
                    L   +      L          +      +      +   LS +      A
Sbjct: 86  ARQLVRVELLNYTKSGDEFWLEIEVVPVLNASGSCTHFVAIERDITGRKLSEQRQDESEA 145

Query: 314 YFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                 +L    V+  P   FV    G     N     +   +S + +      S L   
Sbjct: 146 QMRRTADLLTAVVESTPDALFVKDVQGRYLLFNEGAARVVGKRSEEVVGHDD--SALFGP 203

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
             +         ++   +      +     +  +   +           +   E +   G
Sbjct: 204 SDVEVIRRHDRQVMATGE------TTTSEEMLTSAGVTRTFLATKSPYRDSGGEIVGIVG 257

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
           I  +  + ++ + K+  +     ++L+   D I + +    +L  NR   +++G+  +++
Sbjct: 258 ISRDITERKLAEEKLREQ----ATLLDKAKDAILVRDLHHKLLYWNRGAERIYGWQADEV 313

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
           L       L  +  +        ++  +             K  K+L +      +   +
Sbjct: 314 LGASVKELLYDDPAAFEAATAETLVKGEWAG----ELSQRQKSGKILDMNCHWTLVRDDA 369

Query: 553 C----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                      D ++ K+ + +   A+++              ++H++   LT I+    
Sbjct: 370 GQPKSILAINTDSTDRKKLEKQFLRAQRM-----ESIGTLAGGIAHDLNNVLTPIVMSIT 424

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
           +++        +   +   + +++S N    ++  +L  ++     +      V L   +
Sbjct: 425 LLRAGE----TSEEKLAVLDMVEKSANRGAQLIKQVLTFAR----GVESRTVVVQLRLLL 476

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII- 727
            E   +       K I IR   A ++  +L D   + Q+ LN+  NA      GG + + 
Sbjct: 477 YEVEKICSETFL-KSIQIRVKSAPDLWPVLGDPTQLHQVLLNLCVNARDAMHHGGTLTLQ 535

Query: 728 -------------STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
                        S        V+L+V DTG GM+   +++  +PF     +    G+GT
Sbjct: 536 ADNVVLDEHYAATSVEAKPGPYVVLQVSDTGAGMSPEVIDRIFEPFFTTKET----GKGT 591

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           GLGL    A+V ++ G   + S    GT  ++  P    +
Sbjct: 592 GLGLSTTLAIVKSHGGFLKVHSERDVGTRFQVYLPAQTDA 631



 Score =  107 bits (267), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 34/376 (9%), Positives = 97/376 (25%), Gaps = 26/376 (6%)

Query: 94  YLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKRQNTWYGKTTLWPI 152
            +   ++   +  G  A +++G     +       +  + +   L  +     +   +  
Sbjct: 40  RIVFANDAFLRRTGYTASEVLGRSPRFLQGPSTSREALDQLRAGLVARQLVRVELLNYTK 99

Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212
            G   ++ I++  +P+ + +   + F    I                 + +     ++  
Sbjct: 100 SGDEFWLEIEV--VPVLNASGSCTHF--VAIERDITGRKLSEQRQDESEAQMRRTADLLT 155

Query: 213 GHSSVEKEK----------YDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
                  +                  +     R +  V           DV    ++   
Sbjct: 156 AVVESTPDALFVKDVQGRYLLFNEGAARVVGKRSEEVVGHDDSALFGPSDVEVIRRHDRQ 215

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
                     E+  T      T        +++  E    +      +     +E     
Sbjct: 216 VMATGETTTSEEMLTSAGVTRTFLATKSPYRDSGGEIVGIVGISRDITERKLAEEKLREQ 275

Query: 323 PETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
              +DK      V    + L Y N     +  +++ + +  A     L D P   +    
Sbjct: 276 ATLLDKAKDAILVRDLHHKLLYWNRGAERIYGWQADEVL-GASVKELLYDDPAAFEAATA 334

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
           + ++                + +      L M        +   +      I  +  D +
Sbjct: 335 ETLVKGEWAGEL--------SQRQKSGKILDMNCHWTLVRDDAGQPKSILAINTDSTDRK 386

Query: 442 INKRKMEIEVMQLCSI 457
             +++  +   ++ SI
Sbjct: 387 KLEKQF-LRAQRMESI 401



 Score = 62.7 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/283 (10%), Positives = 75/283 (26%), Gaps = 25/283 (8%)

Query: 48  SFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIG 107
           S ++ + ++      ++      E+     P    V+     D  G     +E   + +G
Sbjct: 136 SEQRQDESEAQMRRTADLLTAVVES----TPDALFVK-----DVQGRYLLFNEGAARVVG 186

Query: 108 NYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAA- 165
             + +++G     +     ++    H   ++    T   +  L     T+  V     A 
Sbjct: 187 KRSEEVVGHDDSALFGPSDVEVIRRHDRQVMATGETTTSEEML-----TSAGVTRTFLAT 241

Query: 166 -LPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDI 224
             P      E  G    GI              +        L +  K    V    + +
Sbjct: 242 KSPYRDSGGEIVGI--VGISRDITERKLAEEKLREQA----TLLDKAKDAILVRDLHHKL 295

Query: 225 FSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQ 282
                    +     ++V   +      DD    E     T  +     +      +   
Sbjct: 296 LYWNRGAERIYGWQADEVLGASVKELLYDDPAAFEAATAETLVKGEWAGELSQRQKSGKI 355

Query: 283 YTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
                ++  +++++ +    L+     +     ++        
Sbjct: 356 LDMNCHWTLVRDDAGQPKSILAINTDSTDRKKLEKQFLRAQRM 398


>gi|119490633|ref|ZP_01623038.1| Multi-sensor Signal Transduction Histidine Kinase [Lyngbya sp. PCC
           8106]
 gi|119453798|gb|EAW34955.1| Multi-sensor Signal Transduction Histidine Kinase [Lyngbya sp. PCC
           8106]
          Length = 1016

 Score =  290 bits (742), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 81/256 (31%), Positives = 135/256 (52%), Gaps = 11/256 (4%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           ++  +  +  L    + AE  +  KS+FLA +SHEIRTP+ AI+GF ++++    G +  
Sbjct: 510 LTALQSSQLALEQVAQRAEIANQAKSEFLANMSHEIRTPMNAILGFCDLLQ----GLVTE 565

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
           PR   Y   I  SG  +LD++ND+LD+SKIE+GK  L++EP++L + ++E   +    A 
Sbjct: 566 PRQRSYLELIAASGESLLDLINDILDLSKIEAGKFQLYYEPLNLRQLIAEVQKIFTHRAK 625

Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNE--- 735
           EK + + +   + +P+ I  D   ++QI  N+L NAI FT  G  QI I     + E   
Sbjct: 626 EKGLSLISHIDDAVPQGIYFDGIRLRQILFNVLGNAIKFTERGFIQISIRAQVYTQENIK 685

Query: 736 --EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
              + + + DTG+G+   + +   + F Q       +  GTGLGL + + +     G   
Sbjct: 686 KVWLEIAITDTGIGIAKNQQDDIFEAFVQSEGQSTRKYGGTGLGLAITRRLTTLLGGTLV 745

Query: 794 IFSTPAKGTLIEIIFP 809
           + S  + G+    IFP
Sbjct: 746 LQSELSHGSSFIFIFP 761


>gi|209527054|ref|ZP_03275569.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
 gi|209492482|gb|EDZ92822.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
          Length = 1376

 Score =  290 bits (742), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 83/259 (32%), Positives = 136/259 (52%), Gaps = 17/259 (6%)

Query: 563  EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
            E + +   L  A + A+  +  KS+FLA +SHEIRTP+ AI+GF +++++     +  PR
Sbjct: 862  ELEHKNQALKEATRHAQAANRAKSEFLANMSHEIRTPMNAILGFCDLLQSL----VSEPR 917

Query: 623  YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
              +Y   I  SG  +L ++ND+LD+SKIE+GKM LH EP+ L   + E   +    A EK
Sbjct: 918  QQQYVKSIAASGKTLLSLINDILDLSKIEAGKMELHQEPIDLRVMLEEIYQIFCHKAAEK 977

Query: 683  RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE------ 735
            ++ +     +N+P+ I+ D   ++QI LN++ NA+ FT  G  + IS    SN       
Sbjct: 978  KVELIREINDNLPKAIMFDEVRLRQILLNMVGNALKFTDEG-WVKISVVTNSNTPLNAEN 1036

Query: 736  -----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
                  + + + DTG+G+   + ++    F Q       +  G+GLGL + K +     G
Sbjct: 1037 PESTISLEIAIADTGIGIAPEQQQRIFDSFIQSEGQSTRKYGGSGLGLAITKRLTQMLGG 1096

Query: 791  KFYIFSTPAKGTLIEIIFP 809
               + S   KG+   +IFP
Sbjct: 1097 TISLESQLGKGSQFTLIFP 1115



 Score =  101 bits (252), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 65/162 (40%), Gaps = 5/162 (3%)

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
           ++ E   +R  +  +     +L  IL+   + I  +  +  I   N+   ++FGY ++++
Sbjct: 211 LQQEIDKSRRLEEALIESNQKLRGILDIAEEAIISVGEDQRITLFNQGAERIFGYTIDEV 270

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDL---RQTLEKITLGSTKEEKLLSLRIIIKK-- 547
           + +P  + L +N   +   ++      ++        +  +G  K  +       I +  
Sbjct: 271 IGQPLNILLPKNLHQIHEKHIQNFGKKEIVNSPMKGRREIVGLRKNGEFFPAEASISRLQ 330

Query: 548 LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
           LP    Y+  + DIS+ +Q + +     +  E     ++  L
Sbjct: 331 LPDQVIYTAMLQDISDRQQAEQERQRLNQDLETRVKQRTQQL 372



 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 33/305 (10%), Positives = 85/305 (27%), Gaps = 33/305 (10%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
             L     E        +D        V     +   N     +  Y   + I     + 
Sbjct: 219 RRLEEALIESNQKLRGILDIAEEAIISVGEDQRITLFNQGAERIFGYTIDEVIGQPLNIL 278

Query: 368 TLLDAPKLSDNNAI---------------KPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
              +  ++ + +                 + ++  R +     A A +  +Q   +    
Sbjct: 279 LPKNLHQIHEKHIQNFGKKEIVNSPMKGRREIVGLRKNGEFFPAEASISRLQLPDQVIYT 338

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKR-------------KMEIEVMQLCSILE 459
                     Q  +   +   + E    +  ++              +     +     E
Sbjct: 339 AMLQDISDRQQAEQERQRLNQDLETRVKQRTQQLPNQIEQQKQIEQALRESEEKFRQFAE 398

Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF--LEQNTPSVMNHYLTEIL 517
           A S+   I++R G +L  + A  +++G   E + ++P + F  ++ N    +   +    
Sbjct: 399 AISEAFFIVSRSGEVLYISPAYQQIWGRTCESLYQEPESWFDSIDVNYRPKVISGMKHQF 458

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAK 575
                  LE        E + +            +   ++    DI+  K+ + +L   +
Sbjct: 459 LRKKELELEYPIFRPDGERRWIRACSFPIYDQDGNIYRFAGIAEDITVRKEAEEELQARE 518

Query: 576 KIAEK 580
               +
Sbjct: 519 VALRE 523



 Score = 41.6 bits (96), Expect = 0.60,   Method: Composition-based stats.
 Identities = 20/149 (13%), Positives = 44/149 (29%), Gaps = 8/149 (5%)

Query: 69  DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMR---LCDVSDIL 125
           +SE  F       +  F + +   G +  IS    +  G     +          +    
Sbjct: 388 ESEEKFRQFAEAISEAF-FIVSRSGEVLYISPAYQQIWGRTCESLYQEPESWFDSIDVNY 446

Query: 126 HIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVH 185
                + +     R+     +  ++  +G      I   + PIY ++     +R  GI  
Sbjct: 447 RPKVISGMKHQFLRKKELELEYPIFRPDGE--RRWIRACSFPIYDQDGNI--YRFAGIAE 502

Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGH 214
              V  +     +  +     L++I    
Sbjct: 503 DITVRKEAEEELQAREVALRELYQIAVAP 531


>gi|218246315|ref|YP_002371686.1| Hpt sensor hybrid histidine kinase [Cyanothece sp. PCC 8801]
 gi|218166793|gb|ACK65530.1| Hpt sensor hybrid histidine kinase [Cyanothece sp. PCC 8801]
          Length = 950

 Score =  290 bits (742), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 74/256 (28%), Positives = 135/256 (52%), Gaps = 17/256 (6%)

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           K+ +++++  K   ++ +  K++F+A + HEIRTPL A+ G + ++ +       NP+  
Sbjct: 268 KELESQMAKQKT-IKEVNQAKNEFMAMIGHEIRTPLNAVTGMTGLLLDTPL----NPQQE 322

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           E+ N I  SG  +L ++N++LD SKIE+ K+ L  +P  L   + E + L    A++K++
Sbjct: 323 EFVNIIRSSGENLLTMINNILDFSKIEAQKLELEEQPFELGLCIEEVLRLFVPQASQKQL 382

Query: 685 LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNE------- 735
            +      N P  I+ D   ++QI  N+L NA+ FT  G  ++ +S     N        
Sbjct: 383 ELAYLIEPNTPSAIVGDSTRLRQILANLLGNAVKFTEKGEVVVYVSAQPLPNSDRTDKTL 442

Query: 736 ---EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
              E+   V+DTG+G+   + ++  +PF Q+  S   +  GTGLGL +++ + +   GK 
Sbjct: 443 ANYELRFAVKDTGIGIAPQDCDRLFQPFSQVDASTTRKYGGTGLGLVISQRLSELMGGKM 502

Query: 793 YIFSTPAKGTLIEIIF 808
           ++ ST  KG+      
Sbjct: 503 WVHSTEGKGSTFYFTI 518


>gi|223983039|ref|ZP_03633243.1| hypothetical protein HOLDEFILI_00522 [Holdemania filiformis DSM
            12042]
 gi|223964989|gb|EEF69297.1| hypothetical protein HOLDEFILI_00522 [Holdemania filiformis DSM
            12042]
          Length = 1500

 Score =  290 bits (742), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 114/750 (15%), Positives = 240/750 (32%), Gaps = 50/750 (6%)

Query: 97   EISEELPKTIGNYAFKMIGMRLCDVSDILHI-DPNNHIGDLLK--RQNTWYGKTTLWPIE 153
             ISE   +  G     M      D +  +H  D     G LL+   +    G+     ++
Sbjct: 601  YISEGFAEMAGMSYTAMCQAIQQDFTANIHPQDREMVRGQLLRFIAERQPQGEIVFRMLK 660

Query: 154  GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG-----KRLDKKFSHLH 208
                 + +      I   +     +     +   R++                +      
Sbjct: 661  QDQSQIWVSSKLSLILDEDGTVHVYAVHHDITKERLEQQRIRQQYNELILEHYRTPGENA 720

Query: 209  EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS----SLTEYYAHKDDVLKTEKYPLLTS 264
             +    +       DI                      L+              + L   
Sbjct: 721  LVAGHCNITRGRILDIMDYTDSDLLASFGYDREVFFKGLSSLIVEPGPRQYFLDHYLNEP 780

Query: 265  EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
                    E            K+  G                +   +    D  E     
Sbjct: 781  ARREFAAGETVQRQTCFVQLPKESQGRYVEIKMNMVSTPDTGDVTGILTVTDITEKTISN 840

Query: 325  T-VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGG-----LSTLLDAPKLSDN 378
              + +     + +    +     ++ +L++ +    +    G     +  LL++  L  +
Sbjct: 841  LILHQLSKINYDFVAD-IDLGRDTYKILSQNEQTSLLNATHGCYSQWIEQLLESHVLPKD 899

Query: 379  NAIKPVML-------YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
                   L          +      +  +       + S  +       +          
Sbjct: 900  KERYERSLKPEYLKSRLQNEDSFTFTFSMR------DPSGELRMKNATVSVTDRRLKRIC 953

Query: 432  GIEPEDVDTRINKRKMEIEVM---QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
                +  ++   ++ +        +L   ++ TS  + +  R+ ++ +    V + +   
Sbjct: 954  LSRTDITESVREQQGLLRVAAVTFELAGFIDITSKRLIVHTRQTVVENLPPYVVEHYDEA 1013

Query: 489  VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            ++  + +       +                   Q  + +      + + +    ++   
Sbjct: 1014 MDKFVGQHTQKEGLEEIRGQFRLAAMLDRLSQDPQGYDFLFPYQDAQGERIKKVSVLWGD 1073

Query: 549  PFSSCYSLTMHDISEWKQEKNK----LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
                   L   D++E    + +    L +A   AE+ +  KSDFL+ +SH+IRTP+ AI+
Sbjct: 1074 ADHQTVCLVRADVTEMLAAERRTKKTLENALIQAEEANRAKSDFLSAMSHDIRTPMNAIM 1133

Query: 605  GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
            G +  +     G   + R  +    I  S   +L ++ND+LD+SKIE  ++ L+   + +
Sbjct: 1134 GMTA-LATAHLG--DSQRVADCLKKITYSSKHLLSLINDVLDMSKIERSQITLNRVRLRM 1190

Query: 665  DEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGG 723
             E + +  +++   A  K I +  S       +   D   + QI +NILSNA+ FTP GG
Sbjct: 1191 PEVIEQLAAIMGPQARIKAIQLNISANQIEHTVFYGDALRINQILINILSNAVKFTPEGG 1250

Query: 724  QIIISTTH---TSNEEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
             I         +   +V     +RDTG+G+    LE    PF +  +SQ  + EGTGLGL
Sbjct: 1251 TIDFIVEEIPGSDQNQVRYRFTIRDTGIGIEPQFLEHLFDPFAR--SSQVGQIEGTGLGL 1308

Query: 779  PLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
             + + +++   G   + S   +G+   I  
Sbjct: 1309 SITRGLIELMNGSLQVESQVGQGSTFVIEL 1338



 Score = 70.8 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 47/505 (9%), Positives = 135/505 (26%), Gaps = 54/505 (10%)

Query: 96  KEISEELPKTIGNYAFKMIGMRLCDVSDILHI-DPNNHIGDLLK---RQNTWYGKTTLWP 151
              S+ +P   G  A     +RL D +  ++  D    +   ++          +     
Sbjct: 236 VYFSDGVPALCGYTAEDYHALRLQDAALRIYAEDSERVVARAMEVVRTGIPATLEFRKVH 295

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGF-GIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
            +G  ++V + ++AL       E  G      + H      + +     L          
Sbjct: 296 RDGHLVWVRVQISAL------GEDEGHPLLHCVFHNISDLKEAQLQMNHLVNSIP----- 344

Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270
             G +S + E              ++        +    ++ +L          E+++L 
Sbjct: 345 -GGIASYKVENNVFIPTFFSDGVAQLTGHSPQEFQAITGQNAMLAIYPPDRERVEKAALQ 403

Query: 271 EQEDFHTINLNQYTKKQYFGT----LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
                  ++++  +  +        L          +S           +    L     
Sbjct: 404 AVVSGEVLDVSYRSPHRDGSLIWIHLNGRRMGPRAEVSQFYAVFTGMSAET--RLYQSIA 461

Query: 327 DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
           D+     +V    N                  ++        +    + +       V+ 
Sbjct: 462 DESSDGIYVIGKHNY-----------------ELYYVSDNHRIFAKDQQAGGRKCYEVLF 504

Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE---NMPQNGIEPEDVDTRIN 443
            +                   E S+      +    +  +            E       
Sbjct: 505 GKKQPCAFCTLKSHAADNEEHEMSVDQPDRFYATRFRETDWNGIEAYIKHVREITGEVRV 564

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINRE--GIIL--STNRAVSKLFGYP---VEDILRKP 496
           +R+ E       ++++    G+ +I     G ++    +   +++ G     +   +++ 
Sbjct: 565 RRENERLAQYFQTVVKNLPGGVTVIQSRQAGQLVPEYISEGFAEMAGMSYTAMCQAIQQD 624

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS- 555
           FT  +      ++   L   ++    Q  E +     +++  + +   +  +        
Sbjct: 625 FTANIHPQDREMVRGQLLRFIAERQPQG-EIVFRMLKQDQSQIWVSSKLSLILDEDGTVH 683

Query: 556 --LTMHDISEWKQEKNKLSHAKKIA 578
                HDI++ + E+ ++       
Sbjct: 684 VYAVHHDITKERLEQQRIRQQYNEL 708



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 35/314 (11%), Positives = 88/314 (28%), Gaps = 27/314 (8%)

Query: 275 FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC----P 330
              ++ N+          Q +     +                        ++K      
Sbjct: 37  LGQVDNNEKPAVWQNLLTQTSYTAEIQTFEIAGEAVALLTLTPEVPAFSTMMEKLWGAVA 96

Query: 331 IPFFVYSHGNL--FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388
               V    N    Y N ++  +    + D       +  +      +  +A+  +   R
Sbjct: 97  CGLVVCQIDNAQPLYVNAAYQQMFGAPAADF---KAAMEAVHPQDWPALQSALAQLRDQR 153

Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
                  A      +      +     I                +  +  +    + ++ 
Sbjct: 154 G------ALQHSFRVWDAARKTYRFIRIDASIRTLPQTGAVLVALLLDVSEQFTLQTQLN 207

Query: 449 IEVMQLCSILEATSDGIA---IINREGIILSTNRAVSKLFGYPVED---ILRKPFTVFLE 502
               ++  I+ A   G+A   + +    +   +  V  L GY  ED   +  +   + + 
Sbjct: 208 TANQKMQEIINAIPGGVAIYKVTDIFETV-YFSDGVPALCGYTAEDYHALRLQDAALRIY 266

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---YSLTMH 559
                 +     E++   +  TLE   +    +  L+ +R+ I  L             H
Sbjct: 267 AEDSERVVARAMEVVRTGIPATLEFRKVHR--DGHLVWVRVQISALGEDEGHPLLHCVFH 324

Query: 560 DISEWKQEKNKLSH 573
           +IS+ K+ + +++H
Sbjct: 325 NISDLKEAQLQMNH 338



 Score = 58.1 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 46/489 (9%), Positives = 122/489 (24%), Gaps = 45/489 (9%)

Query: 96  KEISEELPKTIGNYAFKMIGMRLCDVSDI-LHIDPNNHIGDLLKRQNTWYGKTTLWPIEG 154
             ++    +  G  A         +           + +  L  ++        +W    
Sbjct: 110 LYVNAAYQQMFGAPAADF--KAAMEAVHPQDWPALQSALAQLRDQRGALQHSFRVWDAAR 167

Query: 155 TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214
                    A++    +           +     +        +++ +  + +      +
Sbjct: 168 KTYRFIRIDASIRTLPQTGAVLVALLLDVSEQFTLQTQLNTANQKMQEIINAIPGGVAIY 227

Query: 215 SSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY------YAHKDDVLKTEKYPLLTSEESS 268
              +  +   FS   P           +L         YA   + +      ++ +   +
Sbjct: 228 KVTDIFETVYFSDGVPALCGYTAEDYHALRLQDAALRIYAEDSERVVARAMEVVRTGIPA 287

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
              +      + +    +     L  +      +    N     +   E +      V+ 
Sbjct: 288 -TLEFRKVHRDGHLVWVRVQISALGEDEGHPLLHCVFHN----ISDLKEAQLQMNHLVNS 342

Query: 329 CPIPFFVYSHGN----LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
            P     Y   N      + +     LT +   +  +   G + +L           K  
Sbjct: 343 IPGGIASYKVENNVFIPTFFSDGVAQLTGHSPQE-FQAITGQNAMLAIYPPDRERVEKAA 401

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
           +        +  S R         + + +         +   +           +TR+  
Sbjct: 402 LQAVVSGEVLDVSYRS---PHRDGSLIWIHLNGRRMGPRAEVSQFYAVFTGMSAETRL-- 456

Query: 445 RKMEIEVMQLCSILEATSDGIAIINR---EGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
                      SI + +SDGI +I +   E   +S N    ++F    +   RK + V  
Sbjct: 457 ---------YQSIADESSDGIYVIGKHNYELYYVSDNH---RIFAKDQQAGGRKCYEVLF 504

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDI 561
            +  P       +     +     E        + +  + R           Y   + +I
Sbjct: 505 GKKQPCAFCTLKSHAADNE-----EHEMSVDQPD-RFYATRFRETDWNGIEAYIKHVREI 558

Query: 562 SEWKQEKNK 570
           +   + + +
Sbjct: 559 TGEVRVRRE 567


>gi|118580505|ref|YP_901755.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
 gi|118503215|gb|ABK99697.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
          Length = 802

 Score =  290 bits (742), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 86/670 (12%), Positives = 202/670 (30%), Gaps = 66/670 (9%)

Query: 166 LPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF 225
             I           G+  +   R      A   R  +   +L        +         
Sbjct: 29  TAILDMEGNILIATGWQDI-CTRFHRATPASAARCRESDVYLAGKLLQGETYTLYACRNG 87

Query: 226 SQQSPPPHLRMKNKVSSL--TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY 283
                 P +    +V  L   ++     D     +       + +   +       +++ 
Sbjct: 88  LVDVAVPIVVAGMQVGKLYSGQFLFAPPDTDFFRRQGAEFGFDEASYLEALARVPVVSEE 147

Query: 284 TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY--SHGNL 341
             +     L   ++                   +        V+  P+  F +  + G  
Sbjct: 148 RVRLVMEFLCRLAEMIGRM----------GLASKNARQASLVVENSPVTLFRWKAAAGWP 197

Query: 342 FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI-AASARL 400
                  ++   Y   + +      ++L+        +  + V     +   +    ++ 
Sbjct: 198 VEFVSENVVQFGYAPEELLSGNVSFASLI-----HPADLERVVAEVGGNGEDVSDTLSQE 252

Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
           + +         +      + +         GI  +  + R    ++ +E  +L   L +
Sbjct: 253 YRLVTKSGEVRWVDDRTTVERDGEGRITHYQGIAMDITERRHAADELAMEKERLAVTLRS 312

Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY---LTEIL 517
             DG+   + EG ++  N+   +L G+  E+   K F                  +  +L
Sbjct: 313 IGDGVITADMEGRVILLNKVAEELTGWKQEEARGKAFDEVFRIIDERTRQQRSSPVAHVL 372

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSH 573
                  L   T+   ++ +   +   +  +           L   DI+E K+ + +L +
Sbjct: 373 KNGSGSELAHNTVLVARDGRERLIADSVAPIRDRESRLVGVVLVFRDITEKKRIEQELFN 432

Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIG---FSEVIKNQRFGPLGNPRYIEYANYI 630
           A ++              ++H+    LTAI+G    ++++ ++        R     +  
Sbjct: 433 AHRL-----ESIGVLAGGIAHDFNNLLTAILGNISLAKMLVSEG------DRMFRNLDEA 481

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
           +++      +   LL  S+  +         +SL   + E+ +      +      R   
Sbjct: 482 EKASLRAKGLTQQLLTFSRGGA----PVRRTLSLAAIIRESAAF---TLSGSGTTCRFIL 534

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT-----------HTSNEEVIL 739
             ++  + AD   + Q+  N++ NA    P GG++ IS               +   V +
Sbjct: 535 PEDLWPVEADEGQISQVINNLVLNADQAMPGGGEVEISCANVVIDAKSQLPLPAGAHVRI 594

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V D G G+    + +   P+     +      GTGLGL    +++  + G     S   
Sbjct: 595 AVSDRGQGIPQEAITRIFDPYFTTKRN------GTGLGLATVYSIIRNHDGHIAATSRQG 648

Query: 800 KGTLIEIIFP 809
            G+   I  P
Sbjct: 649 GGSTFTIHLP 658



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 47/463 (10%), Positives = 109/463 (23%), Gaps = 34/463 (7%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH----IDPNNHIGDLLK--RQNTW 143
           D  G +  +++   +  G    +  G    +V  I+        ++ +  +LK    +  
Sbjct: 321 DMEGRVILLNKVAEELTGWKQEEARGKAFDEVFRIIDERTRQQRSSPVAHVLKNGSGSEL 380

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
              T L   +G      I  +  PI  R     G     +                   +
Sbjct: 381 AHNTVLVARDGR--ERLIADSVAPIRDRESRLVGV--VLVFRDITEKKRIEQ-ELFNAHR 435

Query: 204 FSHLHEIKK--GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
              +  +     H         + +       +   +++    +         K     L
Sbjct: 436 LESIGVLAGGIAHDFNNLLTAILGNISLAKMLVSEGDRMFRNLDEAEKASLRAKGLTQQL 495

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
           LT      P +       + + +            +                      NL
Sbjct: 496 LTFSRGGAPVRRTLSLAAIIRESAAFTLSGSGTTCRFILPEDLWPVEADEGQISQVINNL 555

Query: 322 TPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
                   P    V     +  AN          +   + +  G    +           
Sbjct: 556 VLNADQAMPGGGEV----EISCAN------VVIDAKSQLPLPAGAHVRIAVSDRGQGIPQ 605

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
           + +                 T +      LA  +      +       + G         
Sbjct: 606 EAITRI--------FDPYFTTKRNGTGLGLATVYSIIRNHDGHIAATSRQGGGSTFTIHL 657

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
               + E+ V    +++++    + +++ E  I      +    GY           V L
Sbjct: 658 PALVEGEVPVAPEETVVDSGRGTVLVMDDEESIREIAGEMLSYLGYDATVACDGAEAVEL 717

Query: 502 EQNTPSVMNHY---LTEILSLDLRQTLEKITLGSTKEEKLLSL 541
            +        +   L ++         E IT     +E +L++
Sbjct: 718 YRQARERGQPFSVVLMDLTIPGGMGGREAITRLRQMDESVLAV 760



 Score = 51.2 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/317 (6%), Positives = 83/317 (26%), Gaps = 22/317 (6%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIG--MRLCDVSDILHIDPNNHIGDLLKRQNT 142
           F W   A   ++ +SE + +  G    +++   +    +     +     + ++      
Sbjct: 188 FRWKAAAGWPVEFVSENVVQF-GYAPEELLSGNVSFASLIHPADL--ERVVAEVGGNGED 244

Query: 143 WYGKTT--LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI--------VHVNRVDND 192
                +     +  +     +D             + ++G  +             ++ +
Sbjct: 245 VSDTLSQEYRLVTKSGEVRWVDDRTTVERDGEGRITHYQGIAMDITERRHAADELAMEKE 304

Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD 252
             A+  R         +++     + K   ++   +      +  ++V  + +    +  
Sbjct: 305 RLAVTLRSIGDGVITADMEGRVILLNKVAEELTGWKQEEARGKAFDEVFRIIDER-TRQQ 363

Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
                 + L     S L         +  +         +++        +      +  
Sbjct: 364 RSSPVAHVLKNGSGSELAHNTVLVARDGRERLIADSVAPIRDRESRLVGVVLVFRDITEK 423

Query: 313 AYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
              ++                 V + G     N     +    S+  + ++ G   +   
Sbjct: 424 KRIEQELFNAHRL-----ESIGVLAGGIAHDFNNLLTAILGNISLAKMLVSEG-DRMFRN 477

Query: 373 PKLSDNNAIKPVMLYRS 389
              ++  +++   L + 
Sbjct: 478 LDEAEKASLRAKGLTQQ 494


>gi|298241027|ref|ZP_06964834.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297554081|gb|EFH87945.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 785

 Score =  290 bits (742), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 111/753 (14%), Positives = 233/753 (30%), Gaps = 84/753 (11%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTL 149
             G ++EIS       G      +G    D      +      +   +        +  +
Sbjct: 82  PTGEMQEISPSWHAFTGQTEHDGLGRGWRDTVYPADLPQMEEMVMQSITTGRAREIECHI 141

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
              +GT  Y  I    +P+    R   G     +V    +     A      +    +  
Sbjct: 142 RRYDGT--YRLIRARTIPV----RTIGGALREVVVCGTDITKQELAEQMSEAEVKLAVEA 195

Query: 210 IKKGHSSVEKEKYDIFSQQSP--PPHLRMKNKVS--SLTEYYAHKDDVLKTEKYPLLTSE 265
              G    +     I           L + + ++      +    D     +       E
Sbjct: 196 SGVGAWDWDLVTNQIQMTDQGKVLFGLSLDDLITYERFLAFLHPDDRERVEDLIARALIE 255

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
           ++    +      + + +          +   +    +      +     +E        
Sbjct: 256 QADYCTEYRMIWPDGSMHWLAARGRGRFDIQGQPTHMIGTVRDITDQKQAEE---RATTV 312

Query: 326 VDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
           ++     F +V +     Y N     +   K  + +        L +       +  +  
Sbjct: 313 LESITDAFSYVDTQWRYTYVNRGLEKMIGKKREEVVGRYFW-DLLPELLGTPFEHVYREA 371

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
           M  R  R                   L +   P             +    +  + +  +
Sbjct: 372 MATRQTRHIEGFHPSFQR-------WLDIHIYPTPN--------GISFDLHDITERKQAE 416

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL--RKPFTVFLE 502
             ++    +   ++E+   GI + +  G I   N A  KL GY  ED+   +  +     
Sbjct: 417 EALQQSEERFRGLVESNLIGITVSDLSGTIQEANEAFLKLVGYTQEDMAAGQMQWKTITP 476

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---YSLTMH 559
                       E+L+    Q  EK  +  TK  K + + +                 + 
Sbjct: 477 PEYQERSAQAAEELLTTGTIQPFEKEFM--TKNGKRVPVLVGRALFHRGGAPPLVIGFVL 534

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ--RFGP 617
           D +  K+ +                K   L+  SHE++TPL A+ G  ++++ +  R G 
Sbjct: 535 DQTAHKEIE--------------RQKDLMLSMTSHELKTPLAALKGTFQLLQRRAKRLGT 580

Query: 618 LGNPRYIEYANYIDRSGNLV----------LDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
             +    E + +++     +            ++NDLLD+S+I +  + L  EP  L   
Sbjct: 581 KADRMSPEVSAFLNDLSERLAASARQVDVQTHLINDLLDVSRITAQTLKLELEPCDLVPI 640

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727
           V E +  +++ A E+  L      + I ++LAD   + Q+  N ++NAI ++ S   + I
Sbjct: 641 VRETVENLRVTAPERSFLFEL-PEHIIVKVLADRNRISQVVTNYVTNAIRYSSSEQPVTI 699

Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN----------SQQIRGEGTGLG 777
             T   N    + V+D G G+T    +   + + Q+                        
Sbjct: 700 GLTLQEN-TARVWVQDKGPGLTEEAQKGLWQRYHQVKGVPVQSGSGKGLGLGLY------ 752

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             + + ++  + G+  + STP +G+      PL
Sbjct: 753 --ICQTLIAQHKGEVGVESTPGEGSTFWFTLPL 783



 Score = 60.0 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 66/243 (27%), Gaps = 25/243 (10%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI-GDLLKRQNTWYGKT 147
           +D       ++  L K IG    +++G    D+   L   P  H+  + +  + T     
Sbjct: 323 VDTQWRYTYVNRGLEKMIGKKREEVVGRYFWDLLPELLGTPFEHVYREAMATRQT----- 377

Query: 148 TLWPIEG--TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
               IEG   +    +D+   P             F  +H            ++ +++F 
Sbjct: 378 --RHIEGFHPSFQRWLDIHIYPT-------PNGISFD-LHDITERKQAEEALQQSEERFR 427

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPP------PHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
            L E      +V      I                 M             +      +  
Sbjct: 428 GLVESNLIGITVSDLSGTIQEANEAFLKLVGYTQEDMAAGQMQWKTITPPEYQERSAQAA 487

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
             L +  +  P +++F T N  +         L +        +      +     +  +
Sbjct: 488 EELLTTGTIQPFEKEFMTKNGKRVPV-LVGRALFHRGGAPPLVIGFVLDQTAHKEIERQK 546

Query: 320 NLT 322
           +L 
Sbjct: 547 DLM 549


>gi|256060062|ref|ZP_05450244.1| histidine kinase [Brucella neotomae 5K33]
          Length = 859

 Score =  290 bits (742), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 132/724 (18%), Positives = 264/724 (36%), Gaps = 49/724 (6%)

Query: 110 AFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN--TWYGKTTLWPIEGTNLYVPIDLAALP 167
              ++G                  G  L+ Q+        +    +     + ++     
Sbjct: 150 RADVVGQLPDACGAPQDRPAFLAFGRWLRPQSVTALERAISTLREQARAFDLTVETVNGS 209

Query: 168 IYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ 227
           +   +   SG  GF +    +     +A    L+ +   L +  +    +          
Sbjct: 210 LLDVHGRTSG--GFAVA-CFQSLQGVQAERASLEAQNRELADRIELMRRLLDRIEQPAWL 266

Query: 228 QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287
           +     +   N   +L    A+    + +E   L  ++     E++ F    + +     
Sbjct: 267 RDGNGRIEWVNLAYALAVDMANASQ-VISEGRELFGAQARQRLERDRFAEPVVQEQLTAV 325

Query: 288 YFGTLQ--------NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG 339
             G  +          S             ++            ET+D+      ++   
Sbjct: 326 VHGDRRVFDVIDVSAESGSVGLGFDLTEVQAVRDELSRTLKSHAETLDQLSTAVAIFDPE 385

Query: 340 -NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398
             L + N +F+ L     V  +E     + + D  +       +P      D    A  A
Sbjct: 386 MKLQFFNQAFVKLWGL-DVAWLETRPSNTLIFDRLRAEGKLPEQPEWRKWKDSLLSAYRA 444

Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI- 457
                    E    M  +P  +  +   N    G      +    K ++E     L  + 
Sbjct: 445 V--------EPEEHMWHLPDTRTMRVVANPHPQGGVTWFFENMTEKFELEGRYNTLIKVQ 496

Query: 458 ---LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYL 513
              L+  ++ +A+   +G +  +N + + L+  P E +      ++  +       +   
Sbjct: 497 GETLDHLAEAVAVFGSDGRLRLSNPSFAALWSLPSEMVREGTHISIIAKLCNQRGGDGLW 556

Query: 514 TEILSLDLRQTLEKITL---GSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570
            + +S       ++          +  +LS  ++           LT  D+++  + +  
Sbjct: 557 EDFVSTVTGFLDQRDGRMGQVELSDGAILSFAVVPLP---KGQTMLTFIDVTDTVRVERA 613

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           L    +  E     K+DF+  VS+E+R+PLT IIGF+E+++   FG L N R +EY ++I
Sbjct: 614 LKEKNEALELADQIKNDFVQHVSYELRSPLTNIIGFTELLQTPAFGSL-NERQLEYLDHI 672

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
             S +++L IVND+LD++ +++G M L    VS+ EA+S A S V     +  I +    
Sbjct: 673 STSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEAISAAASRVSERLRDHNIGLDVDI 732

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
           A+++    AD   V+Q+  N+LSNA+++ P G  I++        +V+  V D G GM +
Sbjct: 733 ADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVLQVA-RDGADVVFAVHDDGHGMPS 791

Query: 751 YELEKAMKPFGQIPN-----SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
             L+   K F   PN        +          + K+ V+ + G+  I +   +GT + 
Sbjct: 792 EVLDTVFKRFQSYPNGGRRRGAGLGLA-------IVKSFVELHGGRVEIDTGEERGTTVI 844

Query: 806 IIFP 809
             FP
Sbjct: 845 CRFP 848


>gi|320162058|ref|YP_004175283.1| two-component sensor histidine kinase [Anaerolinea thermophila
           UNI-1]
 gi|319995912|dbj|BAJ64683.1| two-component sensor histidine kinase [Anaerolinea thermophila
           UNI-1]
          Length = 380

 Score =  290 bits (742), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 68/255 (26%), Positives = 124/255 (48%), Gaps = 10/255 (3%)

Query: 560 DISEWKQEKNKLSHAKKIAEKESS---HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
           D+S+  +         ++A+K       +   +  V+HE+RTPL AI G+ E + +    
Sbjct: 127 DLSQLDELDQLALSFNQMADKLEKTETMRRQLIGDVAHELRTPLAAIKGYIEGLMDGVIP 186

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
             GN         I    N +  +V+DL ++S++ESG  +L  E VSL + +    ++  
Sbjct: 187 AEGNTYQQ-----IHDEINRLQRLVDDLQELSRVESGAFHLKPELVSLSDLMDTIQNIFV 241

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
                K I  +     N+P +L D   + Q+  N++ NA+ +TPSGG++ +  +     E
Sbjct: 242 PQFIHKGIQFQIQIEPNLPPVLIDKDRILQVLTNLVGNALQYTPSGGKVTVQISKQ-RTE 300

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           +++ V DTG+G++   L      F +   S+     G+G+GL +A+A+V A+ G+ +  S
Sbjct: 301 ILISVSDTGIGISPEHLPFIFNRFYRTDKSRARASGGSGIGLTIAQALVKAHHGRIWAES 360

Query: 797 -TPAKGTLIEIIFPL 810
               KG+      P+
Sbjct: 361 GGEGKGSTFYFTLPI 375


>gi|189425452|ref|YP_001952629.1| histidine kinase [Geobacter lovleyi SZ]
 gi|189421711|gb|ACD96109.1| histidine kinase [Geobacter lovleyi SZ]
          Length = 735

 Score =  290 bits (742), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 80/254 (31%), Positives = 140/254 (55%), Gaps = 10/254 (3%)

Query: 560 DISEW--KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
           D++    + ++ +L  AK+ AE  +  KS+FLA +SHEIRTP+ AIIG +++    R   
Sbjct: 329 DLTNRLLQLQQEELRAAKETAEAATQAKSEFLANMSHEIRTPMNAIIGLAQLTLETRL-- 386

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
             +P+   Y   +  +   +L I+ND+LD SKIE+ K+ +    ++L + + + ++L Q 
Sbjct: 387 --DPQQKSYLERLRNASTALLSIINDILDFSKIEAHKIEIAHLELNLADILQDGVTLFQT 444

Query: 678 YANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNE 735
            A EK + +    A++IP+ ++ D   + Q+  N++SNA+ FT  G   +        ++
Sbjct: 445 AAKEKGLKLSLEIADDIPQHLIGDPLRLGQVLNNLISNAVKFTERGSVTVRAELADRDDQ 504

Query: 736 EVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
           +VI+R  V DTG+G+   + E+  +PF Q   S   R  GTGLGL +A+ +V+   G   
Sbjct: 505 QVIIRILVSDTGIGIDKEQSERLFQPFTQADGSIVRRFGGTGLGLSIARNLVELMGGSIT 564

Query: 794 IFSTPAKGTLIEII 807
           + S P +G+     
Sbjct: 565 LSSCPDQGSTFAFT 578


>gi|304393564|ref|ZP_07375492.1| histidine protein kinase DivJ [Ahrensia sp. R2A130]
 gi|303294571|gb|EFL88943.1| histidine protein kinase DivJ [Ahrensia sp. R2A130]
          Length = 564

 Score =  290 bits (742), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 92/410 (22%), Positives = 173/410 (42%), Gaps = 7/410 (1%)

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
           TF                       D    + +  IE   L +  + +++ +  +NR G 
Sbjct: 103 TFTTATIIAGLAYLAHFATRLIGRKDASAERERSLIERADLLA--DHSNEMLMRLNRSGH 160

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS- 532
               ++A  +L G+    +        +      V    + + ++     + +       
Sbjct: 161 AAFVSKASVRLSGHEPTSLHGAGLLEAMHVQDRVVFLKAVNDSVASRACVSTKARLRVRG 220

Query: 533 TKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
             +       II+     S       HD +     +++L        +    ++   A++
Sbjct: 221 HSDVLWREFAIILHPPIKSRELVAVWHDNTRVGALEDRLDAMDVATLERGESQAKKFAQM 280

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHE+RTPL AI GFS+++ +   GPL   +  EY   I +S + +L IV DLLD+S+I+ 
Sbjct: 281 SHELRTPLNAIGGFSQLLASGVAGPLTTDKQREYVALIQQSSDHLLQIVGDLLDVSRIDQ 340

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712
           G   L        E      +++Q  A    I +      ++  ++ D R+ +Q+ +N+L
Sbjct: 341 GHFELDVAAFDFVEMAQSTTAMMQAEAIAADIDLVCDMPKSLAAVVGDRRACQQVLINLL 400

Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           SNAI F+P+G  + + T       V +R  D G+GMT   +++  +PF Q   + +    
Sbjct: 401 SNAIKFSPAGSSVRL-TARRHGRFVKIRCSDFGIGMTREFIDQIGRPFMQAQPASEGGPT 459

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH---PHDC 819
           G+GLG+ + K +V+ + G+ +  S P +GT + ++ P    S    P D 
Sbjct: 460 GSGLGVSVVKGLVELHGGQIHFDSKPDEGTTVTVMLPFRSASAKPVPADA 509


>gi|320160535|ref|YP_004173759.1| putative two-component hybrid sensor and regulator [Anaerolinea
            thermophila UNI-1]
 gi|319994388|dbj|BAJ63159.1| putative two-component hybrid sensor and regulator [Anaerolinea
            thermophila UNI-1]
          Length = 1819

 Score =  290 bits (742), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 81/253 (32%), Positives = 133/253 (52%), Gaps = 8/253 (3%)

Query: 559  HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
              + + ++  ++L+ A+  A + S  KS+FLA +SHEIRTPL A+IG SE++ +      
Sbjct: 1126 RYLKQLQRISDELALARDQALEASRLKSEFLATMSHEIRTPLNAVIGMSEILLDTPL--- 1182

Query: 619  GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
             N    ++A  I  SG  +L I+ND+LD SKIE+G+M L      L   V   I +    
Sbjct: 1183 -NEEQADFARIIRDSGKSLLSIINDILDFSKIEAGRMTLESVEFQLLPLVDSVIEMFASI 1241

Query: 679  ANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEE 736
              +K + +    A ++P  ++ D   ++Q+ +N++ N + FT  G   + IS       E
Sbjct: 1242 VQKKNLHLFGWIAPDVPNIVVGDPVRLRQVLINLVGNGVKFTEQGHVSVSISLQERLENE 1301

Query: 737  VILRVR--DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
            VILRV   DTG+G++    ++   PF Q   S   R  GTGLGL ++K++V+   G+  +
Sbjct: 1302 VILRVEVHDTGIGLSETARKRLFTPFTQADGSMTRRFGGTGLGLAISKSLVELMGGEIGV 1361

Query: 795  FSTPAKGTLIEII 807
             S   +G+     
Sbjct: 1362 ESVEGQGSTFWFT 1374



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 51/365 (13%), Positives = 113/365 (30%), Gaps = 39/365 (10%)

Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
           +L++E   LLT +   L +          + T+  +   ++  +    E    +    L 
Sbjct: 611 ILESEHPTLLTPDVIRLAQSMALAASRAYEVTRLYHDLQIEVENLRRAEEQLDKRQRYLE 670

Query: 313 AYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFL-LLTKYKSVDDIEIAGGLSTLLD 371
           A      +L    V + P P  +   G +  A+  F   +             GL     
Sbjct: 671 ALMKIQSHLLALEVGENPYPLVLQVLGEITEADRVFAYQIMPGSDGRIFASPVGLWEKSP 730

Query: 372 APKLSDN---------NAIKPVMLYRSDRTCIAASAR-------------------LHTI 403
           +     +            +P++    +     A A                    L  I
Sbjct: 731 SEWTGRDLFQVNWRFSENQRPLVAALQEGEVCLAHASQLDEKAQQTLNGLGVDTVLLFPI 790

Query: 404 QWNRENSLAMTFIPFEKANQFPEN----MPQNGIEPEDVDTRINKRKM-EIEVMQLCSIL 458
             N++ +  + F   +   ++ +     +          + R+N  ++      +   ++
Sbjct: 791 FHNQQLAGIVGFTAEQGEREWSDLEISMIQVAVNSLAIAEERLNAEELIRNAEQRYRLVV 850

Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
           E   D I  ++  G     N A  ++ G  V D + +PF     +     +      IL 
Sbjct: 851 ENARDIIFQMDLTGRFTFLNPAWERITGLKVADTVGRPFWQAAPEGMVQELGAGF-RILR 909

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF----SSCYSLTMHDISEWKQEKNKLSHA 574
             +     +       +E+ + L   ++++P         S T  DIS +K+ +  L   
Sbjct: 910 EKVTDRYHQTIHLHLPDERTVWLDAFMQRVPDPETQREMISGTFVDISSFKRIEYMLRRN 969

Query: 575 KKIAE 579
           ++   
Sbjct: 970 EQALR 974



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 51/148 (34%), Gaps = 2/148 (1%)

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILRK 495
              T+  +++ +   M    + E   +G A++  E   +L TNR    L      D    
Sbjct: 342 IQQTQQARQESQTRQMLYTQLFEQAREGFALLAPETLEVLETNREFKNLLEMEETDEPV- 400

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555
            F   L       +   L + L    R+        + +  + + L I   ++     + 
Sbjct: 401 NFASLLLSRVIPEVRGALRQELREIARKGEGLEKSLALRSGREIELSIQPLRIASRYYFY 460

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESS 583
             + D++E  + + +L +  +     + 
Sbjct: 461 AFVRDMTERLRLEERLQNQLRETALLNQ 488



 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/142 (12%), Positives = 43/142 (30%), Gaps = 6/142 (4%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY- 144
            + +D  G    ++    +  G      +G      +    +        +L+ + T   
Sbjct: 857 IFQMDLTGRFTFLNPAWERITGLKVADTVGRPFWQAAPEGMVQELGAGFRILREKVTDRY 916

Query: 145 GKTTLWPI-EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
            +T    + +   +++   +  +P     RE       G             + +R ++ 
Sbjct: 917 HQTIHLHLPDERTVWLDAFMQRVPDPETQREMI----SGTFVDISSFKRIEYMLRRNEQA 972

Query: 204 FSHLHEIKKGHSSVEKEKYDIF 225
              LH+I    S    +K D  
Sbjct: 973 LRSLHDITSSQSLPFDQKIDHL 994


>gi|242278944|ref|YP_002991073.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens
           DSM 2638]
 gi|242121838|gb|ACS79534.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens
           DSM 2638]
          Length = 659

 Score =  290 bits (742), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 99/552 (17%), Positives = 204/552 (36%), Gaps = 80/552 (14%)

Query: 323 PETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
            E  +  P     +     L Y N ++         + +     L        + D    
Sbjct: 8   HELGELLPAMICEFLPDSTLTYVNKAYCDYFGKNEKE-LVGYKFLE--FLPEDVVDAVKS 64

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
           + + L             +H +  N E             N+  + +    +  +  + +
Sbjct: 65  RYLNLT----PDNPVHTHVHEVVRNGEICWHEWTNRAF-FNENGQAVRFQAVGQDTSERK 119

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF---- 497
           + ++ ++  +M      E + D I      G +L       ++      +     F    
Sbjct: 120 LMEQLLKSRLMLREYSTEHSVDVII-----GRVL------EEIKRLTCCEYAFFHFVESE 168

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLR-----------------QTLEKITLGSTKE---EK 537
              L+ +    +N  L +    ++                           S+     + 
Sbjct: 169 DFLLDVSEQVKLNSCLQQKYEGEIFNSYLFANWCTECYSKCCSIYNVEIKDSSFNNDLQH 228

Query: 538 LLSLRIIIKKLPFSSCYSLTM----HDISEWKQ--------------------EKNKLSH 573
                +++  + +       +     D +  K+                      + L  
Sbjct: 229 DYMQYVLVTPVMYQGEVFAVLALCKQDRTFSKKDTEVVNQLATTAVDAVVHKIMSDALLK 288

Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
           +K+ AE  S  KS+FLA +SHEIRTP+  I+G  +++K        +   +EY +Y  +S
Sbjct: 289 SKEQAEAASKVKSEFLANMSHEIRTPINGIMGMLQLLKTTDL----DAEQLEYVDYALKS 344

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693
            + +  ++ D+LD++ +E+G++ L   P  + E +     L    A EK +++    +  
Sbjct: 345 SSRLSSLLIDILDLTMVEAGQLELQIAPFEIAETIDSIRQLFGQEAREKGLVLNFDISPE 404

Query: 694 IPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN--EEVILRVRDTGVGMTN 750
           +P  +  D   ++Q+ +N++ NA+ FT  G ++ +         + ++ +VRDTG+G+ +
Sbjct: 405 VPETVDGDALRLQQVLVNLVGNALKFTEHG-RVDVEVFLNDKRAKSLLFKVRDTGIGIAD 463

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
              +K  +PF Q   S +   +G GLGL + K ++    G+ Y+ S   KGT+     PL
Sbjct: 464 DIQDKLFEPFIQGDGSYKRSFQGAGLGLSICKRVLKVMGGEIYVSSVLGKGTVFSFTMPL 523

Query: 811 Y----DTSHPHD 818
                DTS   D
Sbjct: 524 VTEELDTSAEKD 535



 Score = 40.4 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/125 (10%), Positives = 29/125 (23%), Gaps = 4/125 (3%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150
               L  +++      G    +++G +  +      +D        L   N  +      
Sbjct: 23  PDSTLTYVNKAYCDYFGKNEKELVGYKFLEFLPEDVVDAVKSRYLNLTPDNPVHTHVHEV 82

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
              G       +      ++ N +   F+  G             L K       +  E 
Sbjct: 83  VRNGEI--CWHEWTNRAFFNENGQAVRFQAVG--QDTSERKLMEQLLKSRLMLREYSTEH 138

Query: 211 KKGHS 215
                
Sbjct: 139 SVDVI 143


>gi|16330815|ref|NP_441543.1| sensory transduction histidine kinase [Synechocystis sp. PCC 6803]
 gi|1653308|dbj|BAA18223.1| sensory transduction histidine kinase [Synechocystis sp. PCC 6803]
          Length = 674

 Score =  290 bits (742), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 83/251 (33%), Positives = 127/251 (50%), Gaps = 3/251 (1%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E +     L  A   AE  ++ KS FLA +SHE+RTPL AIIG+SE++  +    L +  
Sbjct: 416 ELENTVKALELASSEAEAANATKSIFLANMSHELRTPLNAIIGYSEMLIEEAED-LDSEE 474

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
            +   + I RSG  +L ++NDLLDISKIE+GKM L+ E  +L E ++  +  +       
Sbjct: 475 LVPDLDKILRSGKSLLALINDLLDISKIEAGKMELYLETFNLKELIAGILDTISPLLKNN 534

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG--GQIIISTTHTSNEEVILR 740
              +    +     +  DL  ++Q  LN+LSNA  FT  G    I+        + +  +
Sbjct: 535 NNKLEVEISLESEEVYGDLIKLRQGILNLLSNASKFTKDGIISFIVEEFKVDEKDWLSFQ 594

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V+DTG+G+T  ++ K  +PF Q  +S   +  GTGLGL + +       G  Y+ S    
Sbjct: 595 VKDTGIGLTEEQMSKLFQPFTQADSSTTRKYGGTGLGLAITRKFCQMMGGDIYLTSEIGV 654

Query: 801 GTLIEIIFPLY 811
           G+   I  P Y
Sbjct: 655 GSSFTIKLPKY 665


>gi|239907183|ref|YP_002953924.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239797049|dbj|BAH76038.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 624

 Score =  290 bits (742), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 90/378 (23%), Positives = 163/378 (43%), Gaps = 38/378 (10%)

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
           +  E   L ++   T D + +++R+GIIL      S  +G P   +   P  + L  +  
Sbjct: 9   LIRETDALETL---TGDALLLVDRDGIILHATALASCFYGLPAPQLTGLPLGLALNDSAA 65

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQ 566
                                  +      +   +R         S   + + D++  + 
Sbjct: 66  RE---------------------ICLPATGRPALVRWEPLPGHGHSLRRVLLRDLTPLRA 104

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
            K KL  A++ A+     KS FLA ++HEIRTP+  I+G +E+       P    +  EY
Sbjct: 105 AKTKLEEAREAAKAGERAKSHFLANITHEIRTPMIGILGMTELAMATELSP----KQREY 160

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
                 S   +L ++ND++D ++IE+G   L   P SL E V E IS+ +  A +K + +
Sbjct: 161 LEMARHSAQSLLTVLNDIVDYARIETGAFELARTPFSLRETVEEVISVFRPLAAKKGLSL 220

Query: 687 RTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-----TSNEEVILR 740
                  +P+ ++ D   ++Q+ +N++ NA+ FT +G  ++               +   
Sbjct: 221 TYRCIGAVPQTLVGDPSRLRQVLINLVGNAVKFTDAGSVVLAVARIGGGQANDQTRLRFE 280

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           VRDTG+G+   +++     F Q   S   R +G GLGL + + +V+   G + + S   K
Sbjct: 281 VRDTGIGIPGDKIKAIFDSFTQADVSPARRYQGAGLGLAIVRQLVEMMQGSYNVASEEGK 340

Query: 801 GTLIEI----IFPLYDTS 814
           G++  I      P+   S
Sbjct: 341 GSVFTIEADFSLPVSLES 358


>gi|323491808|ref|ZP_08096983.1| Signal transduction histidine kinase [Vibrio brasiliensis LMG
           20546]
 gi|323313943|gb|EGA67032.1| Signal transduction histidine kinase [Vibrio brasiliensis LMG
           20546]
          Length = 850

 Score =  290 bits (742), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 80/371 (21%), Positives = 160/371 (43%), Gaps = 26/371 (7%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV-EDILRKPFTVFLEQ 503
           +++  +  Q   +   +   + + N  G +   N +  + F      ++L +     +  
Sbjct: 349 KRLNEQEKQFTDLFNFSLSPVTLWNTAGDLSRFNPSAERSFRTSASRELLIESLKPHILM 408

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                    +   +                  +        I      +       DI+ 
Sbjct: 409 CAQGATLTGINTTI----------------VNKTYRWNLSPIVTDNSVAQIMAQGQDITS 452

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
           + + + +   A++ AE+ +  ++DFLA++SHE+RTPL  I+G S+++K++      + R 
Sbjct: 453 FIEAEKQSQAAREEAEESARMRADFLAKMSHELRTPLNGILGVSQLLKDKMV----DQRD 508

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
           IE+   +  SG  +L ++ND+LD SKIE G+ ++  EP  L E  +    + +   ++K 
Sbjct: 509 IEHVEVLCNSGEHLLAVLNDILDFSKIEQGQFHIESEPFRLVELTNTVERIFKPLLDDKN 568

Query: 684 ILIRT--SFANNIPRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVI-L 739
           +         ++     +D   + QI  N++SNA+ FT  G   + +   H  +  ++ L
Sbjct: 569 VAFEVVNKIPHD-KWANSDQVRLNQIIFNLVSNAVKFTHHGSVTVTLGCQHQESGCLLNL 627

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V DTG+G+  + L    +PF Q   +      G+GLGL + +++V    G+  + S   
Sbjct: 628 DVVDTGIGIEQHRLSHIFEPFVQAEANTTREYGGSGLGLAIVQSLVTIMGGEIKLESEVD 687

Query: 800 KGTLIEIIFPL 810
            GT   +  PL
Sbjct: 688 VGTRFSVRIPL 698


>gi|218887634|ref|YP_002436955.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218758588|gb|ACL09487.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 861

 Score =  290 bits (742), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 98/662 (14%), Positives = 213/662 (32%), Gaps = 58/662 (8%)

Query: 166 LPIYSRNREFS---GFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKY 222
           L +  R R F+   G R  G +     +                +    +   S++  + 
Sbjct: 187 LALRERTRVFTDQDGRRLLGSLTPIMNEPGCSGEPCHFHPADKLVLGALEVVLSLQDAEA 246

Query: 223 DIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQ 282
           ++ + Q+    L     +   T  +      L      L+    +          ++L+ 
Sbjct: 247 EVLAFQTRVVTLAAAVFLLGATAVHLFLRRFLTRPVARLIEGTRA----VARGEKVDLSD 302

Query: 283 YTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NL 341
             ++   G L          ++ +      A  +   +      D+ P    V      L
Sbjct: 303 VRQQDEIGELAGAITRMDRDIAQK-----RAELNRQRDEYQRLFDQVPCAITVQDRNLRL 357

Query: 342 FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401
              N  F      +  D                           +  + +T +A  +   
Sbjct: 358 LRYNRMFRENFTPRPGD----------FCFQAYKGRTGKCPNCAVEMTMQTGLAHCSEES 407

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
               +   +  +        +          +  +  D +  + K+    ++  +I    
Sbjct: 408 GFHTDGSRAHWIVHTS-PVFDAEGRVAAAMEMTLDITDRKELEEKLRRSELKYHAIFNHI 466

Query: 462 SDGIAIINRE-GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520
              + +++++   ++  N    K++G+P E++  + F      +        L     L+
Sbjct: 467 PSAVFVLDQQTLEVVDCNSTAEKVYGWPREEMKGRSFLDLFPPDERERYASQLRAFTVLN 526

Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH--DISEWKQEKNKLSHAKKIA 578
             + + +       + +   + I++    + +   L +   DI+E  + + K+  A K+A
Sbjct: 527 RARNVAR-------DGRPFHVDIMLSPAEYLARQVLLVTTTDITERLEAEQKVIQAGKMA 579

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN--QRFGPLGNPRYIEYANYIDRSGNL 636
                   +    V+HE+  PLT I      +     R  P+        A  ID   + 
Sbjct: 580 T-----LGEMATGVAHELNQPLTVIKTAGGFLLRKVTRGEPIDPEILATMAREIDGHVDR 634

Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696
              I+  + D  +    + +L  E V ++  +  A        + + I I    A  +P 
Sbjct: 635 ASRIIGHMRDFGR----RSDLALERVDVNAVLQSATEFFSRQLSLRGIDIDWRLAEPLPP 690

Query: 697 ILADLRSVKQIALNILSNAIHFTPSGG--------QIIISTTHTSNEEVILRVRDTGVGM 748
           ++A    ++Q+ +N+L NA                +I + T    +  V  RV DTG G+
Sbjct: 691 VMAVSNRLEQVFINLLLNARDAIEERSEKEPGAPRRITVET-VADDRRVTARVCDTGGGI 749

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
               L +  +PF          G+GTGLGL ++  +V    G     +    G    + F
Sbjct: 750 PPALLPRIFEPFFTTKK----VGKGTGLGLSISYGLVKEFGGSIQASNMAGGGACFTLNF 805

Query: 809 PL 810
           P+
Sbjct: 806 PV 807


>gi|170739808|ref|YP_001768463.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
 gi|168194082|gb|ACA16029.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
          Length = 975

 Score =  290 bits (742), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 118/801 (14%), Positives = 224/801 (27%), Gaps = 130/801 (16%)

Query: 51  QSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNI----------DAHGYLKEIS- 99
                    E    T        F+        +    I          D    L   + 
Sbjct: 2   SQAPIGTPHERSLGTGTAPRGEGFLDAAGVAKQKLIEAIESSSEGFALFDPDDRLVLCND 61

Query: 100 ------EELPKTIGNYAF-KMIGMRLCD--VSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150
                   L + I   A  + I     +  +           + + +       G     
Sbjct: 62  HFRDFHPGLAEVIVPGASFQTIARAAAESCIVHKEGTTVEAWLAERMAHYREPRGSILQQ 121

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
            ++G      + ++        R+ +      +            +      + ++L   
Sbjct: 122 RVDGR----WVQVS-------ERKTNDGGVVAVYTDVTEIKRAEQVVLTTQGRLTYLLTA 170

Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270
                   +         +P         +                            L 
Sbjct: 171 SPSMICSFEVGGR----NAPTFISENVRDLLGYEPSDY----------MAGPEFWLDRLH 216

Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330
            ++    ++      +Q             EY   R   +     DE             
Sbjct: 217 PEDRDRVLSEFPRLLQQGH--------NVIEYRFLRADGTYRWVRDEQR----------- 257

Query: 331 IPFFVYSHGNLFYANPSFLLLTKYKSVD-DIEIAGGLSTLLDAPKLSDN-----NAIKPV 384
                  HG       S+  +T++K  +  ++       LL A   + N           
Sbjct: 258 --LLRDPHGEPVEVVESWSDITEHKEAELALQRQTAFVELLQAAATAANEASTVEDAVRF 315

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
            L R  +         + +  +   +L  T I    A +                     
Sbjct: 316 CLDRVSQHAGWPIGHAYVVAEDGSRTLVPTGIWHCDAPERFARFRAAAAGMRIGAGTGPA 375

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
                      ++L    + I   +                                  +
Sbjct: 376 G---------RALLSGAPEWILG-DPS------------------------------SPD 395

Query: 505 TPSVMNHYLTEILSL-DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS- 562
            P         + +      T+ +  +        +         P        M +I  
Sbjct: 396 DPRAAAAAADGLRAGFGFPVTVGREVVA-------VLEFFACDAPPPDPALLRVMTNIGA 448

Query: 563 ------EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
                 E K+ +  L  AK+ AE  S  KS FLA +SHE+RTPL AIIGF+ ++  +   
Sbjct: 449 QLGRVIERKRAEESLRQAKEAAEDASRAKSSFLANMSHELRTPLNAIIGFTRLVMRRAKE 508

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
            L   +  E    I  S   +L ++N +LD++K+E+G+M +     +L+  +   +  V+
Sbjct: 509 ALPT-KQFENLEKILASSEHLLSLINSILDLAKVEAGRMEVKASEFALEPVLDLCLRTVE 567

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
                + + +     +    +  D   ++QI +N+LSNAI FT +G  + +    ++ E 
Sbjct: 568 PLIKSEGVRLVRDVEDPPTMLRTDEEKLRQILINLLSNAIKFTEAGS-VTLRVR-SAGEH 625

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           V   V DTG+G+    L      F Q+ NS      GTGLGL ++  +     G   + S
Sbjct: 626 VEFAVTDTGIGIPQEALSAIFDEFHQVDNSATRSHSGTGLGLAISHRLARLLGGHIDVES 685

Query: 797 TPAKGTLIEIIFPLYDTSHPH 817
              +G+   +  P      P 
Sbjct: 686 RVGQGSTFTLSIPPRIAGAPE 706


>gi|229012822|ref|ZP_04169991.1| hypothetical protein bmyco0001_32610 [Bacillus mycoides DSM 2048]
 gi|228748503|gb|EEL98359.1| hypothetical protein bmyco0001_32610 [Bacillus mycoides DSM 2048]
          Length = 516

 Score =  290 bits (742), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 98/531 (18%), Positives = 194/531 (36%), Gaps = 40/531 (7%)

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTK 353
           +S +   + +                +     +  P     +   G + + NPS   +  
Sbjct: 13  SSTQKKRHPNVSGRLRNHIQNRSLAEMYASLFEHNPDSIISLNLEGVILHINPSAERILG 72

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
           Y S + +E     S L       + +    V+ Y  +         + +I       L +
Sbjct: 73  YTSNE-LERKTITSIL-------EAHISDQVLQYIKNAAADNQKEYIVSIYHKDGYLLDV 124

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
                    +         ++P +   RI ++ ++    +L +++ +    +   + EG 
Sbjct: 125 VTKLVPIFVKNRLTGVYAIMKPLEKSERI-EKVLQESEKRLRTLMNSMPAFVIFKDHEGR 183

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV----MNHYLTEILSLDLRQTLEKIT 529
            L  N      F +       K     ++ N            + E+     +    +  
Sbjct: 184 WLEANDYALSCFNFHNVPYHGKKDNELIQYNEAYRESFLHCEEVDELTWQKGQILHGEEF 243

Query: 530 LGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
           +    +  L+ L I    L           +   D++E K+ +  L  ++K+A       
Sbjct: 244 IIHRNDFDLV-LSISKVPLFHPDGSRKGLIVMGRDVTELKETEKLLRKSEKLAVV----- 297

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
               A ++HEIR PLT++ GF  ++      P  N     Y + +    + +  I +  +
Sbjct: 298 GQLTAGIAHEIRNPLTSLKGFLTLL-----HPEINEENKWYVDVMLSEISQMESITSQFM 352

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
            +SK +     L     ++   + E ++ +   A    + I     + I  I  D   +K
Sbjct: 353 AMSKPQ----VLSIHTCNVQTLIEEVVTFILPTAVMHSVHIIMDHFDYISDIQCDSNQLK 408

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           Q+ +NIL NAI   P GG I I T    N+ V +R+ D G G+    + +  +PF     
Sbjct: 409 QVLINILKNAIEAMPDGGNIFIQTASLENDFVSIRIMDEGCGIPEERMARLGEPFY---- 464

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
              ++ +GTGLGL +   ++  + GK +I S    GT ++I  P+  T+ P
Sbjct: 465 --SLKEKGTGLGLMMCYKIIQEHHGKLFISSELNIGTTVDIQLPIA-TAQP 512



 Score = 43.9 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 22/257 (8%), Positives = 64/257 (24%), Gaps = 16/257 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ++  G +  I+    + +G  + ++    +  + +    D            N      +
Sbjct: 54  LNLEGVILHINPSAERILGYTSNELERKTITSILEAHISDQVLQYIKNAAADNQKEYIVS 113

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           ++  +G    + +    +PI+ +NR  +G   + I+           + +  +K+   L 
Sbjct: 114 IYHKDG--YLLDVVTKLVPIFVKNR-LTGV--YAIMKPLEKSERIEKVLQESEKRLRTLM 168

Query: 209 EIKKGHSSVEKEKYDIFSQQSPP-----PHLRMKNKVSSLTEYYAHKDDVLK----TEKY 259
                    +  +                H    +          ++          E  
Sbjct: 169 NSMPAFVIFKDHEGRWLEANDYALSCFNFHNVPYHGKKDNELIQYNEAYRESFLHCEEVD 228

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
            L   +   L  +E     N            L +        +      +     ++  
Sbjct: 229 ELTWQKGQILHGEEFIIHRNDFDLVLSISKVPLFHPDGSRKGLIVMGRDVTELKETEKLL 288

Query: 320 NLTP--ETVDKCPIPFF 334
             +     V +      
Sbjct: 289 RKSEKLAVVGQLTAGIA 305


>gi|229114563|ref|ZP_04243977.1| hypothetical protein bcere0017_8600 [Bacillus cereus Rock1-3]
 gi|228668628|gb|EEL24056.1| hypothetical protein bcere0017_8600 [Bacillus cereus Rock1-3]
          Length = 883

 Score =  290 bits (742), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 78/338 (23%), Positives = 149/338 (44%), Gaps = 18/338 (5%)

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            +D++++            +    +  +L      T E        + +   L++  ++L
Sbjct: 382 HQDLIQQTIDNLGLTIHSIIGRMRIQTLLHESQAMTEELQVQSEELQTQAEELQMQAEEL 441

Query: 549 PFSSCYSLTMHDISEWKQEK-----NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
             ++    +  + +E K        ++L        + S +KS+FLA +SHE+RTPL +I
Sbjct: 442 RTTNEQLESRTEEAEQKTADLQITKSELEEKASELLRSSKYKSEFLANMSHELRTPLNSI 501

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +  SE+++      L +    E A  I  SG  +L ++ND+LD+SK+E+GK+++ FE  +
Sbjct: 502 LLLSEMLRENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDIIFEATN 560

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSG 722
           + +  +         A +K +      ++ IP +   D + ++QI  N+LSNA  FT  G
Sbjct: 561 ISDMAANMHQNFLHIAAQKNVEFTIEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKG 620

Query: 723 GQ------IIISTTHTS-----NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
                   I  S           + + + V+DTG+G+   + +   + F Q   +   + 
Sbjct: 621 SVSLHFDSIETSNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGATIRKY 680

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            GTGLGL + K       G   + S   +G+   +  P
Sbjct: 681 GGTGLGLSICKEFARLLGGWITLESNVGEGSTFTVYIP 718


>gi|78063729|ref|YP_373637.1| periplasmic sensor hybrid histidine kinase [Burkholderia sp. 383]
 gi|77971614|gb|ABB12993.1| periplasmic sensor hybrid histidine kinase [Burkholderia sp. 383]
          Length = 1032

 Score =  290 bits (742), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 114/696 (16%), Positives = 230/696 (33%), Gaps = 45/696 (6%)

Query: 140 QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF-GIVHVNRVDNDPRALGK 198
           +N       +W   G     P+  + +  +    E +  + +  +V         R    
Sbjct: 84  RNGVTNAQLIWRETG-----PVPDSVVDAFYDAGERTAIKPYPSVVFGVSKQPADRTEVA 138

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
           R       L  I    S    +    +   +    L +     +     A  +  ++  +
Sbjct: 139 RYLSLSVLLARICAASSINRGQTLVGYHYSTRASLLGLVPDSGAGGGALATPEGRVQVME 198

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
              +    S +  +        + +    +   +   ++      +  +    +    E 
Sbjct: 199 ALRIDFGASPVQGRSTTGRP--HVHWLPPFIDPISGAARIRLAAQAQVDGEPFAVIVTEY 256

Query: 319 ENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
                  +   P     +    +F+       L         + A     L   P     
Sbjct: 257 AP--EHLLSWQPE----HPVDGVFFVTTGDNQLVAASPGVAGDEARTGRLLALDPSRDRT 310

Query: 379 NAIKPVML---YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
              +            T  A    L       +    + +            +    I  
Sbjct: 311 KPEQAAFRDGFVIFHGTLDATGWTLAYALPWTDVVANVAWRASLLLGASLLTIAIMWILL 370

Query: 436 EDVDTRI-----NKRKMEIEVMQL-CSILEATSDGIAIINR-EGIILSTNRAVSKLFGYP 488
                R+      + +   +   L  S++E    G+ +I+R +G  +  + A++++    
Sbjct: 371 VRFHRRVFASVYARSQRVFDSEALCRSVIETAPIGLGLISRADGHFMLVSPALAEMIA-- 428

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK-- 546
                           +   +  Y   I       TL+   + +  +     L + +   
Sbjct: 429 -------RLGSDYRALSAQAVARYDAFIAGGAAGGTLQTDFVLAEADAGAAPLHLEVSAC 481

Query: 547 --KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
             +        + + D++  +Q   +L  A + A+  ++ KS FLA ++HEIRTPL  I+
Sbjct: 482 GARYQEIDVLIVAVADVTARRQLVQQLEEAVRAADSANAAKSSFLAAITHEIRTPLNVIL 541

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           G  E++         + R       +  + + +L +V+D+LD SKIE+G M +      +
Sbjct: 542 GNLELLDRSALDASQHGR----VQTLRAAASGLLGLVSDILDFSKIEAGAMTVEAIEFDV 597

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
              +   +      A  K + +      ++  R+  D   + Q+  N+LSNAI FT SG 
Sbjct: 598 IGVIERTLGAFAPVAKAKGLSLFCEIDASDAQRMRGDPTRLGQVLGNLLSNAIKFTASGH 657

Query: 724 Q-IIISTTHTS--NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
             + +S       + E+ + V DTG+G+   +  K  K F Q+  S   R  GTGLGL L
Sbjct: 658 VLVRVSVASAGCGDAELSIAVEDTGIGIAGADRHKLFKAFSQVDASITRRYGGTGLGLAL 717

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
              +  A  G+  + S P  G+   +  PL     P
Sbjct: 718 CDRLAAAMGGRIDVASVPGTGSRFTLTVPLGVAVMP 753


>gi|237816446|ref|ZP_04595439.1| sensory box histidine kinase [Brucella abortus str. 2308 A]
 gi|237788513|gb|EEP62728.1| sensory box histidine kinase [Brucella abortus str. 2308 A]
          Length = 870

 Score =  290 bits (742), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 132/724 (18%), Positives = 263/724 (36%), Gaps = 49/724 (6%)

Query: 110 AFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN--TWYGKTTLWPIEGTNLYVPIDLAALP 167
              ++G                  G  L+ Q+        +    +     + ++     
Sbjct: 161 RADVVGQLPDACGAPQDRPAFLAFGRWLRPQSVTALERAISTLREQARAFDLTVETVNGS 220

Query: 168 IYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ 227
           +   +   SG  GF +    +     +A    L+ +   L +  +    +          
Sbjct: 221 LLDVHGRTSG--GFAVA-CFQSLQGVQAERASLEAQNRELADRIELMRRLLDRIEQPAWL 277

Query: 228 QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287
           +     +   N   +     A+    + +E   L  ++     E++ F    + +     
Sbjct: 278 RDGNGRIEWVNLAYAQAVDMANASQ-VISEGRELFGAQARQRLERDRFAEPVVQEQLTAV 336

Query: 288 YFGTLQ--------NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG 339
             G  +          S             ++            ET+D+      ++   
Sbjct: 337 VHGDRRVFDVIDVSAESGSVGLGFDLTEVQAVRDELSRTLKSHAETLDQLSTAVAIFDPE 396

Query: 340 -NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398
             L + N +F+ L     V  +E     + + D  +       +P      D    A  A
Sbjct: 397 MKLQFFNQAFVKLWGL-DVAWLETRPSNTLIFDRLRAEGKLPEQPEWRKWKDSLLSAYRA 455

Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI- 457
                    E    M  +P  +  +   N    G      +    K ++E     L  + 
Sbjct: 456 V--------EPEEHMWHLPDTRTMRVVANPHPQGGVTWFFENMTEKFELEGRYNTLIKVQ 507

Query: 458 ---LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYL 513
              L+  ++ +A+   +G +  +N + + L+  P E +      ++  +       +   
Sbjct: 508 GETLDHLAEAVAVFGSDGRLRLSNPSFAALWSLPSEMVREGTHISIIAKLCNQRGGDGLW 567

Query: 514 TEILSLDLRQTLEKITL---GSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570
            + +S       ++          +  +LS  ++           LT  D+++  + +  
Sbjct: 568 EDFVSTVTGFLDQRDGRMGQVELSDGAILSFAVVPLP---KGQTMLTFIDVTDTVRVERA 624

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           L    +  E     K+DF+  VS+E+R+PLT IIGF+E+++   FG L N R +EY +YI
Sbjct: 625 LKEKNEALELADQIKNDFVQHVSYELRSPLTNIIGFTELLQTPAFGSL-NERQLEYLDYI 683

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
             S +++L IVND+LD++ +++G M L    VS+ EA+S A S V     +  I +    
Sbjct: 684 STSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEAISAAASRVSERLRDHNIGLDVDI 743

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
           A+++    AD   V+Q+  N+LSNA+++ P G  I++        +V+  V D G GM +
Sbjct: 744 ADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVLQVA-RDGADVVFAVHDDGHGMPS 802

Query: 751 YELEKAMKPFGQIPN-----SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
             L+   K F   PN        +          + K+ V+ + G+  I +   +GT + 
Sbjct: 803 EVLDTVFKRFQSYPNGGRRRGAGLGLA-------IVKSFVELHGGRVEIDTGEERGTTVI 855

Query: 806 IIFP 809
             FP
Sbjct: 856 CRFP 859


>gi|206890234|ref|YP_002248566.1| sensory box sensor histidine kinase [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206742172|gb|ACI21229.1| sensory box sensor histidine kinase [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 729

 Score =  290 bits (742), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 84/492 (17%), Positives = 183/492 (37%), Gaps = 50/492 (10%)

Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN------AIKPVMLYRSDRTCIAASARL 400
           SF  + + +    +    G S  +               A  P+ L    +  + + A +
Sbjct: 259 SFERINEIQRDKMLRGEEGTSWYISGWHRGVEGEIKKLIAYSPIKLKERPQPVVWSIAVV 318

Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE--------PEDVDTRIN--KRKMEIE 450
             I         +              +   G+            ++  +     +++  
Sbjct: 319 APISEVEGAIHTVHIQQMVIQGVIVVIILFGGLFINFILVTWSNILEREVAKKTAELKKS 378

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
             +  S++E   D I   + EG ILS N+  ++ F     ++L +  +     +   +  
Sbjct: 379 EEKYKSLIENAEDIILATDSEGKILSINKFGAEFFKKQEIELLGQSVSEIFSPDGRILAI 438

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQ 566
           + + +I      + +       TKE         ++ L   +           DI++ K+
Sbjct: 439 N-IKQIFKTGESRQITHRVKSDTKE---YWFNTNLRALKDETGNIYSVLGIARDITDRKK 494

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
            + +  + +K+A   +       A V+HEI  PL  I+GF++++  +      +P   EY
Sbjct: 495 MEEQSYYTEKLASLGT-----LAAGVAHEINNPLAIILGFTDILLEK-----TSPESQEY 544

Query: 627 --ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
                I++       IV +LL   + +  K  +    V+++E +   + ++    +   I
Sbjct: 545 DILKTIEKQATNAKRIVENLLSFVRHKEHKEQI----VNINECIETVLDVMNNTISLNNI 600

Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744
            ++     ++P +  D   ++Q+  NI++NAI+    GG + +ST +     + + + DT
Sbjct: 601 ELKKQLQQDLPYVKGDAGELQQVFFNIINNAIYVMKGGGVLTVSTKY-DGHWLEVCISDT 659

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-----PA 799
           G G++    ++   PF          G+GTGLGL ++  ++  + G     +        
Sbjct: 660 GCGISKEHRQRIFDPFFTTK----EVGKGTGLGLWVSYNIIKKHNGIITFETRTKEEAEE 715

Query: 800 KGTLIEIIFPLY 811
            GT   I  P  
Sbjct: 716 TGTKFIIRLPAA 727



 Score = 48.5 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 11/151 (7%), Positives = 33/151 (21%), Gaps = 5/151 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            D+ G +  I++   +       +++G  + ++          +I  + K   +   +  
Sbjct: 396 TDSEGKILSINKFGAEFFKKQEIELLGQSVSEIFSPDGRILAINIKQIFKTGES---RQI 452

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
              ++        +     +         +   GI                 +K  S   
Sbjct: 453 THRVKSDTKEYWFNTNLRALKDETGNI--YSVLGIARDITDRKKMEEQSYYTEKLASLGT 510

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK 239
                   +      I               
Sbjct: 511 LAAGVAHEINNPLAIILGFTDILLEKTSPES 541


>gi|241664378|ref|YP_002982738.1| PAS/PAC sensor hybrid histidine kinase [Ralstonia pickettii 12D]
 gi|240866405|gb|ACS64066.1| PAS/PAC sensor hybrid histidine kinase [Ralstonia pickettii 12D]
          Length = 652

 Score =  290 bits (742), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 99/490 (20%), Positives = 179/490 (36%), Gaps = 23/490 (4%)

Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGG--LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA- 396
            L  AN    +       D I          +L    L      + + + R         
Sbjct: 22  RLETANLQADITLVDNETDFIAQLSARTFDAILADYMLPQFTGAEALDIARRMAPQTPFI 81

Query: 397 -------SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449
                        +         +              +       E       +  +  
Sbjct: 82  FVSGALGEEHAVDMLKRGATDYVIKQRLQRLP---VVLLRALAEAAERRQRIAAEAALRE 138

Query: 450 EVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
                  ++ A  +  +  ++ +GI+ + N A   + GY  EDIL K   +   Q     
Sbjct: 139 AETHFRLLINALKEHAVLSLDPQGIVRTWNAASRSILGYAREDILGKSAEILYPQAAREA 198

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEW 564
              +  ++  +    +L        K+        ++  +   +   +     + D +E 
Sbjct: 199 G-EFQRKLERVRREGSLTDDRWMLRKDGTPFYASSVVTAIHNETGQLVGFSKIIRDSTEE 257

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           +   + L  AK+ AE  +  K  FLA +SHE+RTPLT I+    +++ ++  P       
Sbjct: 258 RIAADALRRAKEEAETANHAKDHFLAVLSHELRTPLTPILTAVHLLELRQDLPAYAVAQ- 316

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
                + R+  L   +++DLLDI+ I  GK+ + F  V L   +   + + +     KR+
Sbjct: 317 --LEVVRRNAELEARLIDDLLDITGIARGKLAVSFALVDLYPLLESTLEISRNDMQAKRL 374

Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744
            ++T F     R+ AD   ++Q+  N++ NA+ FTP GG I +   + S   V + V+D 
Sbjct: 375 SLKTRFEAGRSRLYADGARIQQVIWNLVRNAVKFTPEGGAIEVRVWNPSASTVAVSVKDN 434

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTL 803
           G+G+    L +    F Q   S   R  G GLGL +A A+V  + G     S    +G  
Sbjct: 435 GIGIEPDALPRIFSAFEQADASITQRFGGLGLGLAIAYALVQKHEGSLIAESAGRHEGAT 494

Query: 804 IEIIFPLYDT 813
             +  PL   
Sbjct: 495 FTLTLPLATE 504



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/252 (11%), Positives = 69/252 (27%), Gaps = 10/252 (3%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK---RQNT 142
             ++D  G ++  +      +G     ++G    ++               L+   R+ +
Sbjct: 155 VLSLDPQGIVRTWNAASRSILGYAREDILGKS-AEILYPQAAREAGEFQRKLERVRREGS 213

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
                 +   +GT  Y    + A  I++   +  GF    I+  +  +       +R  +
Sbjct: 214 LTDDRWMLRKDGTPFYASSVVTA--IHNETGQLVGFSK--IIRDSTEERIAADALRRAKE 269

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
           +    +  K    +V   +    +  +P        ++      YA     +      L 
Sbjct: 270 EAETANHAKDHFLAVLSHELR--TPLTPILTAVHLLELRQDLPAYAVAQLEVVRRNAELE 327

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
                 L +        L           L  ++ E           SL   F+ G +  
Sbjct: 328 ARLIDDLLDITGIARGKLAVSFALVDLYPLLESTLEISRNDMQAKRLSLKTRFEAGRSRL 387

Query: 323 PETVDKCPIPFF 334
                +     +
Sbjct: 388 YADGARIQQVIW 399


>gi|329930884|ref|ZP_08284277.1| sporulation kinase A family protein [Paenibacillus sp. HGF5]
 gi|328934501|gb|EGG31009.1| sporulation kinase A family protein [Paenibacillus sp. HGF5]
          Length = 480

 Score =  290 bits (742), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 94/494 (19%), Positives = 193/494 (39%), Gaps = 38/494 (7%)

Query: 326 VDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
            ++  I    V   G +   N +   L  Y   +    A                  + +
Sbjct: 13  FEQSVIGMALVSLDGTILKVNSALCDLLGYSPQELTAGAP------QEENSLRGLLNRVI 66

Query: 385 MLYRSDRTCIA-ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
              R+ +          +  +   +  L ++       +             +    R  
Sbjct: 67  QNARAAQGHQPFVPPVEYAYRHPSDRELYLSARCSVDHDPEQGPKGYLVQFEDRTLLRQL 126

Query: 444 KRKMEIEVMQLC-------SILEATSDGIAIINREGIILSTNRAVSKLFG-YPVEDILRK 495
            +++E +  +L         +LE     + I  ++GI+   N A  +L       D+L  
Sbjct: 127 MKQLEQKEQKLNEKENSFLQLLEELPLSVLIT-KKGIVHYVNSAGIRLVNAMHPRDVLGI 185

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555
              V ++ +    +              +++ +      +EK+++   +I +    +   
Sbjct: 186 STDVIVDASYHHALMKRRATYAESGEIGSVDYLIRCLDGQEKMVTGFTLIIQYEGENAAV 245

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
               DI+E + E++++  ++K+            A ++HEIR PLT+I GF +++++   
Sbjct: 246 GIFKDITEQRMEEDRVMQSEKLTTA-----GQLAAGIAHEIRNPLTSINGFVKLLRSAER 300

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
                     Y   I+     +  IVN+LL +SK +   ++    P+ +   + + I+L+
Sbjct: 301 SNEL------YFEIIESELKRIELIVNELLVLSKPQGAHVS---GPIDVSAILDQIITLM 351

Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
           ++ A  K I I   +      +  ++  +KQ+ +N+L NA+     GG I +   H+   
Sbjct: 352 KVQAALKNIEIIPHYPLIPIYVQGEVNQLKQVFINLLKNAMEAMNHGGSITLDIVHS-GP 410

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
           EV + V+D GVGMT  +++   +PF    ++      GTGLGL + K ++  + G   + 
Sbjct: 411 EVQIIVQDEGVGMTQDQIQSLGQPFFTTKDT------GTGLGLMITKNIIHNHGGTMNVE 464

Query: 796 STPAKGTLIEIIFP 809
           STP  GT   I  P
Sbjct: 465 STPDHGTTFTIHLP 478


>gi|322419518|ref|YP_004198741.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
 gi|320125905|gb|ADW13465.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
          Length = 798

 Score =  290 bits (742), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 98/646 (15%), Positives = 202/646 (31%), Gaps = 43/646 (6%)

Query: 190 DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH 249
           + +     + +        +  +  +            +S P   R+ +           
Sbjct: 44  ETEAEINARFIAGLGDLSPDSWRSEARRLDAVLSHRGSRSHPERHRILDATGRELASSGK 103

Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
                   +   +   + ++   E   ++               +     F  L  R   
Sbjct: 104 AQAEPVIRRSQPIYYGDRAIGSVEISRSLRPILKKSALVAVMGLSIGLIVFILLPFRAIN 163

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
             +    +  N   + ++       V    G +   N     ++ Y+  +          
Sbjct: 164 RANRQLKDSYNFLRKVMESSANALIVLNLDGTIGMINERCTEMSGYQPEELYGREVPG-- 221

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
            L  P+ +D    +  M+   +         L  ++ +                Q     
Sbjct: 222 -LVGPQATDMVLRQLHMVASGETDIAKFETEL--VRKDGGTVS--IACGATPVYQEGRIA 276

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
                     + R+    ++       ++++A    I  +N  G +   NR   ++ GY 
Sbjct: 277 GTVLSVENITERRLAVEALKSAKEYTENLIQAACVMILGLNLRGEVTLFNRTGEEVTGYS 336

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            E+++ K +   +           +  I S D +          +K   + ++      +
Sbjct: 337 QEELIGKNWFETVMGAEAFYKMCSMPRI-SGDSQSGCAFEGQIVSKAGAMRTISWRNSAI 395

Query: 549 PFSSCYSLTM---HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
                   T+    DI+E K+ + +L H++K+              V+H+    L+ ++G
Sbjct: 396 VEKGVVIGTLCFGIDITEHKKIEAQLRHSQKM-----ESIGQLAGGVAHDFNNMLSVMLG 450

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
           ++++ + +            Y   I ++G    D+V  LL  S+ E     +    V+L+
Sbjct: 451 YAQLCQLEAAPSTP---LWLYLQEIIKAGERSRDMVRQLLAFSRKE----IISPRAVNLN 503

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725
           E   E    +     E+ +    +    +  +  D   V QI +N+  NA    P GG +
Sbjct: 504 EHCLETEKTLSRLIGEE-VRFSFAPDPALWLVRIDPSQVDQILMNLAVNARDAMPDGGTL 562

Query: 726 IISTT--------------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
            I T                     V L V DTG GM    +++  +PF          G
Sbjct: 563 TIRTENLDLDEPFCDYRLDAKPGSYVCLSVIDTGTGMDRELVKRIFEPFFTTK----EVG 618

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
           +GTGLGL     +V  N G   + S P +GT   I  P    +  H
Sbjct: 619 KGTGLGLATVYGIVTQNGGFVDVESEPGQGTAFRIYLPRLTGAPEH 664



 Score = 41.2 bits (95), Expect = 0.76,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 38/125 (30%), Gaps = 7/125 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY--GK 146
           ++  G +  I+E   +  G    ++ G  +  +      D       ++    T     +
Sbjct: 190 LNLDGTIGMINERCTEMSGYQPEELYGREVPGLVGPQATDMVLRQLHMVASGETDIAKFE 249

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
           T L   +G    V I   A P+Y +    +G      V             K   +   +
Sbjct: 250 TELVRKDGGT--VSIACGATPVY-QEGRIAGT--VLSVENITERRLAVEALKSAKEYTEN 304

Query: 207 LHEIK 211
           L +  
Sbjct: 305 LIQAA 309


>gi|117925093|ref|YP_865710.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117608849|gb|ABK44304.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 871

 Score =  290 bits (741), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 83/549 (15%), Positives = 185/549 (33%), Gaps = 42/549 (7%)

Query: 279 NLNQYTKKQYFGTLQNNSKESFEYLSH--RNHPSLSAYFDEGENLTPETVDKCPIPFF-V 335
           +  +       G   +   E   ++      +  +     + E      V+  P   F V
Sbjct: 202 DATRTGIHPPKGHENDELGELAAHMHSMLTQYRQVLGESLQNEARLRAVVNALPDLVFLV 261

Query: 336 YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIA 395
              G       +   L +  ++           + D  +   N   + ++  R      +
Sbjct: 262 SKEGRCLEMLTTHEELLRNYALQTPGHTLERLFIYDQAEKLQNAITRTLITGRLQTLTFS 321

Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
            + R     +    +           +   +      +  +    +    +++ ++    
Sbjct: 322 ITGRDKAYTFEARLTPF-------GQSGGQQPDSVVMVARDITTQQDAVNQLKDQLHFQN 374

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
            +L+     +   +  G  L  N+A   + G+  E ++ K     ++Q+     +     
Sbjct: 375 VLLDNIPTPVFHKDSNGRYLGCNKAFEDVLGFDSEQLVGKTVFDIVQQDLARHYDQSDQF 434

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLR--IIIKKLPFSSCYSLTMHDISEWKQEKNKLSH 573
           +     +Q+ E +   +      + L   +        +     + DI++ K  +N+L  
Sbjct: 435 LFLNGGKQSYETVLTYADGLRHDIILNKGVFYNNNGEIAGLVGVIQDITDRKAMENQLRQ 494

Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
           A+K+              ++H+    L+AI+GF+E+            R       +  +
Sbjct: 495 ARKM-----EAVGTLAGGIAHDFNNILSAILGFTEL---TFNQVPQESRAYRNLQQVYDA 546

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693
           GN   D+V  LLD S+      ++    +     + +A++L++       I I T     
Sbjct: 547 GNRARDLVKRLLDFSRPS----DVGMVAMDPITVIRDALTLLRATLPS-SIQIITDIPKM 601

Query: 694 IPRILADLRSVKQIALNILSNAIHFT--PSGGQIIISTTHTS-----------NEEVILR 740
              + AD   ++Q+ +N+ +NA        GG + ++                   + + 
Sbjct: 602 ELLVRADPTQLQQVMMNLCTNAARAMRKDQGGSLTVTVKRQEIREELPNALHKGNYICIS 661

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V+DTG G+  + LE    PF          GEGTGLGL +   +V  + G   + S    
Sbjct: 662 VQDTGCGIPTHHLEHIFDPFFTT----SKLGEGTGLGLSVVHGIVHKHGGTVTVESEIGV 717

Query: 801 GTLIEIIFP 809
           G++  +  P
Sbjct: 718 GSVFRVYLP 726



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/236 (11%), Positives = 63/236 (26%), Gaps = 10/236 (4%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL-KRQNTWY 144
            ++ D++G     ++     +G  + +++G  + D+         +     L        
Sbjct: 384 VFHKDSNGRYLGCNKAFEDVLGFDSEQLVGKTVFDIVQQDLARHYDQSDQFLFLNGGKQS 443

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            +T L   +G  L   I L     Y+ N E +G    G++             ++  K  
Sbjct: 444 YETVLTYADG--LRHDIILNKGVFYNNNGEIAGL--VGVIQDITDRKAMENQLRQARKME 499

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPP-HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
           +                  I          +  +++     +      +  +     LL 
Sbjct: 500 AVGTLAGGIAHDFNNILSAILGFTELTFNQVPQESRAYRNLQQVYDAGNRARDLVKRLLD 559

Query: 264 SEESS----LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
               S    +         +     +     ++Q  +      L  R  P+     
Sbjct: 560 FSRPSDVGMVAMDPITVIRDALTLLRATLPSSIQIITDIPKMELLVRADPTQLQQV 615


>gi|261342213|ref|ZP_05970071.1| sensor protein GacS [Enterobacter cancerogenus ATCC 35316]
 gi|288315547|gb|EFC54485.1| sensor protein GacS [Enterobacter cancerogenus ATCC 35316]
          Length = 919

 Score =  290 bits (741), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 87/333 (26%), Positives = 152/333 (45%), Gaps = 17/333 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +FG+ +   +  P    +               L   +   +             +++ +
Sbjct: 193 IFGWRLMRDVTGPIRNMVNTVDR-----IRRGQLDSRVEGFMLGELDMLKNGINSMAMSL 247

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 248 AAYHEEMQHNVDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTP 307

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+            NP   ++ + I+RS N +L I+ND+LD SK+E+GK+ L  
Sbjct: 308 LNGVIGFT----RLTLKSELNPTQRDHLHTIERSANNLLTIINDVLDFSKLEAGKLILES 363

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P  L   + E ++L+   +++K + +  +  N++P  ++ D   ++Q+  N++ NAI F
Sbjct: 364 IPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKF 423

Query: 719 TPSGGQ-IIISTTHTSNEEVILRV--RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T SG   I++     SN +V + V  RDTG+G+   +  +  + F Q   S   R  GTG
Sbjct: 424 TESGNIDILVEKRALSNNKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTG 483

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           LGL + + +V    G     S P KG+      
Sbjct: 484 LGLVITQKLVKEMGGDISFHSQPNKGSTFWFHI 516


>gi|169612351|ref|XP_001799593.1| hypothetical protein SNOG_09297 [Phaeosphaeria nodorum SN15]
 gi|160702493|gb|EAT83489.2| hypothetical protein SNOG_09297 [Phaeosphaeria nodorum SN15]
          Length = 545

 Score =  290 bits (741), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 89/384 (23%), Positives = 162/384 (42%), Gaps = 21/384 (5%)

Query: 436 EDVDTRINKRKMEIEV---MQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVED 491
           +  +    + K++  +        ++E   D  I +++  G + + N       GY   +
Sbjct: 5   DTTEELREQLKLKERLYMNETFRILVETVKDYAIFMLDPNGNVATWNAGAQAFKGYQPSE 64

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
           I+ K F+ F  Q+          E+        +E       K+       +II  +   
Sbjct: 65  IIGKHFSRFYSQDDRDSGKPE-RELRDALRDGRVEDEGWRYRKDGTRFWADVIITPIFKD 123

Query: 552 S---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                +S    D++E ++ +  L       E+ S  KS+FLA +SHEIRTP+  ++    
Sbjct: 124 DTLLGFSKVTRDLTERRKAEQSLI---SAYEEASKLKSEFLANMSHEIRTPMHGMLSA-- 178

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
                      +   ++ A+ I  SG+++L ++ND+LD SK+ SG  ++  + +S+ + V
Sbjct: 179 --LTLLLDTKLDEDQLDLAHVIQESGDVLLQVINDILDYSKLASGSFSVSHDIISVTDIV 236

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSG-GQII 726
                   L   +  + +       +P+    D    +QI  N LSNA  FT  G  +I+
Sbjct: 237 QSVFR-AHLKLYKPEVKLEILLDPRLPKSAEGDSLRYRQIIQNFLSNATKFTEEGYVRIV 295

Query: 727 ISTTHTSNEEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
                  ++  I+   V DTG+G+     +K   PF Q  NS   R +GTGLGL + K++
Sbjct: 296 AKLHKEEDDHFIIMSEVIDTGIGVPQDSSDKLFTPFLQFDNSTTKRFKGTGLGLSICKSL 355

Query: 785 VDANMGKFYIFSTP-AKGTLIEII 807
            +   G    F  P  +G++    
Sbjct: 356 AELMGGSIGYFPNPEGRGSVFWFT 379



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 40/136 (29%), Gaps = 9/136 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID---PNNHIGDLLKRQNT 142
            + +D +G +   +       G    ++IG            D   P   + D L+    
Sbjct: 38  IFMLDPNGNVATWNAGAQAFKGYQPSEIIGKHFSRFYSQDDRDSGKPERELRDALRDGR- 96

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
              +   +  +GT  +  + +   PI+  +    GF    +                  +
Sbjct: 97  VEDEGWRYRKDGTRFWADVII--TPIFKDD-TLLGFSK--VTRDLTERRKAEQSLISAYE 151

Query: 203 KFSHLHEIKKGHSSVE 218
           + S L      + S E
Sbjct: 152 EASKLKSEFLANMSHE 167


>gi|126658998|ref|ZP_01730139.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110]
 gi|126619655|gb|EAZ90383.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110]
          Length = 881

 Score =  290 bits (741), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 75/262 (28%), Positives = 135/262 (51%), Gaps = 15/262 (5%)

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
             D+ + + +  +   +++  E+ +  KS+FLA + HEIRTPL A+ G + ++ + +   
Sbjct: 211 FQDLQDLQTKMAQQKASEQALEELNRAKSEFLAMIGHEIRTPLNAVTGMTGLLLDTQL-- 268

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
             N +  E+ + I  SG  +L ++N++LD SKIE+ K+ L  +P  L   + E + L   
Sbjct: 269 --NDQQKEFVSIIRNSGENLLTMINNILDFSKIEAQKLELEEQPFELGPCIEEVLRLFVS 326

Query: 678 YANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII------ISTT 730
            A++K + +     +N P  I+ D   +KQI  N++ NA+ FT  G  +I      I + 
Sbjct: 327 QASKKNLELAYLIESNTPSAIIGDSTRLKQILANLIGNAVKFTKKGEVVIYVNATPIKSR 386

Query: 731 HTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
             S +    E+   V+DTG+G+ +    +  +PF Q+  S   +  GTGLGL ++K + +
Sbjct: 387 QDSKQNSRYELRFAVKDTGIGIPSDRCNRLFQPFSQVDASTTRKYGGTGLGLAISKGLSE 446

Query: 787 ANMGKFYIFSTPAKGTLIEIIF 808
              G  ++ ST  KG+      
Sbjct: 447 LMGGNMWVHSTEGKGSTFNFTI 468


>gi|313149766|ref|ZP_07811959.1| two-component system histidine kinase [Bacteroides fragilis 3_1_12]
 gi|313138533|gb|EFR55893.1| two-component system histidine kinase [Bacteroides fragilis 3_1_12]
          Length = 501

 Score =  290 bits (741), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 104/512 (20%), Positives = 203/512 (39%), Gaps = 27/512 (5%)

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIAGG 365
                      G+ +  +  D  P+   V  + G +   N     L   +   D++   G
Sbjct: 6   GQRRALKKALVGDAVCRQLFDVWPLSILVLGADGKIERMN----KLLLEELQLDLKQVAG 61

Query: 366 LSTLLDAPKLSDNNAIKPVMLY-RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
              +     + D   + P  L            +    I+  R N   +         + 
Sbjct: 62  RQAVEIIELIQDKENLLPRFLKEIQSGKRNILFSTNCFIREPRSNISFLIQGGIVGIYES 121

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
              +         ++ R  +  + I + +   I           + E  ++  +      
Sbjct: 122 GRLIKMIVYLRNVLEERTQRHVLNIALSKTH-IFS------WSFDMERNLMVIDPRYFDY 174

Query: 485 FGYPVED--ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL- 541
              P +D  +  + F+  +  +   V+   L   L+ +L +           +       
Sbjct: 175 LKIPTQDYTLTMEQFSDLVHPDDRKVLFDALAGQLTGNLYEAP-VPYRLRRGDGGWEWFE 233

Query: 542 --RIIIKKLPFSSCYSLTMHDISEW-KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
                + +L       + +   ++  K  +++L+ A + A++    KS FLA +SHEIRT
Sbjct: 234 GQSTYVGQLSDLPFRIVGICMSTQRHKDIEDRLNDALRKAQRSDRLKSAFLANMSHEIRT 293

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
           PL AI+GFS ++ +++   L      EYA  I+++G L++ +++D+LD+SKIES  M  +
Sbjct: 294 PLNAIVGFSTLLVSEQSD-LRPEDIEEYAALIEKNGQLLMFLISDILDLSKIESNTMEFN 352

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718
               SL++  ++ I+ +Q    +  + +          I AD   ++Q+  N+++NAI F
Sbjct: 353 VSVFSLNKMFAD-IARMQRLNVKPGVELIADLPAEDVSITADPVRLEQVVNNLINNAIKF 411

Query: 719 TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
           T  G  I I       ++V L V DTG GM+   +    + F +  +      +GTGLGL
Sbjct: 412 TSRGS-IRIGYRRRGEKDVELFVEDTGKGMSEEVIAHVFERFYKGDSF----VQGTGLGL 466

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            + K +V+   G+    S   +G   E+  P+
Sbjct: 467 AICKTIVEHFGGEIRAESEVGEGARFEVCLPI 498


>gi|229116155|ref|ZP_04245546.1| hypothetical protein bcere0017_24440 [Bacillus cereus Rock1-3]
 gi|228667272|gb|EEL22723.1| hypothetical protein bcere0017_24440 [Bacillus cereus Rock1-3]
          Length = 590

 Score =  290 bits (741), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 87/501 (17%), Positives = 173/501 (34%), Gaps = 41/501 (8%)

Query: 314 YFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                E      +   P+    +  +G+    N    ++T Y + + I     L  L   
Sbjct: 102 LLSRKEEELHTILQNMPVMVDALDYNGDFVLWNRECEIVTGYTAEEIIGNPNALQLLYPD 161

Query: 373 PKLSDNNAIKPVML----YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
                    K +         + +    +  + TI W+                      
Sbjct: 162 HNYRHQIQNKFLTRGKNFRDWEMSLTCKNGEIKTIMWSN-----------ISEQFPVTGF 210

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
               +  +    +  + +++ +  +L  I +A  D   +   +G I+         F  P
Sbjct: 211 SYWAVGVDITHLKAIEEQLKQQTSELELIFKALPDLCFLTKDDGTIIDYKAGSPTKFYVP 270

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            E  + K F   L           + ++        +E           +         L
Sbjct: 271 AEAFMGKKFYEILPSPVAQQFQEAIRQLKDEGKNVIVEYPLTI---NGSIDFFEARCLPL 327

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                  + + DI+E K+ +  L+ +  +A           A V+HE+R PLT I GF +
Sbjct: 328 LQDK-IMIIVRDITERKKAEELLNKSDTLA-----AIGQLAAGVAHEVRNPLTVIKGFIQ 381

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
                    +      +Y + +      +  I+ + L I+K +     ++ E  ++ +  
Sbjct: 382 ------LFQINKEDQEKYFDLMLSEIERIEAILQEFLSIAKTD----EINTEKKNIYQIF 431

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
              +SL+   A    I +     +    I      +KQ+ +NIL N+I    +GG+I I 
Sbjct: 432 KNVVSLINTKAIMTNIQVELFTDSEEIIIECSENQLKQVFINILQNSIEAMLNGGKISIH 491

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                   VI+ V D G+G+    +++  +PF         + +GTG+GL L+  +++++
Sbjct: 492 IKEIHKNGVIISVIDEGIGIPEERIKRLGEPFY------STKEKGTGIGLMLSYKIIESH 545

Query: 789 MGKFYIFSTPAKGTLIEIIFP 809
            G   I S    GT + I  P
Sbjct: 546 QGTISIMSEVGVGTTVTIYLP 566


>gi|225851110|ref|YP_002731344.1| phosphate regulon sensor protein PhoR [Persephonella marina EX-H1]
 gi|225645199|gb|ACO03385.1| phosphate regulon sensor protein PhoR [Persephonella marina EX-H1]
          Length = 339

 Score =  290 bits (741), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 73/354 (20%), Positives = 146/354 (41%), Gaps = 36/354 (10%)

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLF--GYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           L+   +G+ +++    I   N     +        D L K F+  ++ N       YL  
Sbjct: 15  LDFLKEGVIVVDENQNIEYMNAYAKDILKNDIKGIDPLGKHFSEVIKNN-------YLYS 67

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575
           I+S   ++  ++        + +  +R+       ++   L   DI+             
Sbjct: 68  IISYKNKRDFKEEITI---NDDIFLIRM----YHINNKKVLHFQDIT------------- 107

Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
            + E     K DF++ VSHE++TP+  + G  E ++ +           ++ N   +  +
Sbjct: 108 -LFEIYKQAKKDFVSNVSHELKTPIAVMKGIVETLEQEE----DVQTIRKFLNMAKKRID 162

Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695
            +  ++NDLL ++K+ES +  L+     L   V+   + ++  + EK I +         
Sbjct: 163 QMDSLINDLLILAKLESKEEKLNITKADLSRIVNSIFNDLEHLSKEKNIKLINDIPEGFL 222

Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755
            I  D +    +  N++ NAI +    G + +S       E+++ V DTG+G+       
Sbjct: 223 -IDVDQKKFDILLKNLIENAIKYNKPEGSVTVSAERKD-GEILINVTDTGIGIPKESQPL 280

Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             + F ++  S+     GTGLGL + K + +A+ GK  + S P  G+   +  P
Sbjct: 281 IFERFYRVDKSRSRNVGGTGLGLSIVKHIAEAHNGKVEVKSEPNVGSTFTVRIP 334


>gi|303258394|ref|ZP_07344397.1| probable hybrid sensory kinase [Burkholderiales bacterium 1_1_47]
 gi|302858840|gb|EFL81928.1| probable hybrid sensory kinase [Burkholderiales bacterium 1_1_47]
          Length = 863

 Score =  290 bits (741), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 90/355 (25%), Positives = 153/355 (43%), Gaps = 10/355 (2%)

Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL 519
              D   I N +      +    ++ G+  + I      +           ++L  IL+ 
Sbjct: 225 NVDDVFIIFNEKKEPEYVSDNSLRILGFDPDAITNNKEELLNRFYDED--RNWLRNILND 282

Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579
                     +      +   L +   +        +++ D +E    +  L+ A   A+
Sbjct: 283 RTIIKTATRNIELKGSSQTFQLSVYPVRQGLIDWTVVSLFDETEQIAYQRNLADALTTAK 342

Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639
             S  KSDFL+ +SHEIRTP+ AIIG + +  ++        +  +       +   +L 
Sbjct: 343 NASQAKSDFLSHMSHEIRTPMNAIIGMTTIALSRIS---DKQKVEDCLKKTLLASRHLLG 399

Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR-TSFANNIPRIL 698
           ++ND+LD+SKIES K+ L +E   L E V    +L++  A EK +     +   N   ++
Sbjct: 400 LINDILDMSKIESNKLALSYEKFDLQETVHSIYNLIEPQAKEKGVSFEIVTNDVNQECLV 459

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQII--ISTTHTSNEEVILR--VRDTGVGMTNYELE 754
            D   V Q+ +N+++NA+ FTP GG++   +S   TS E + LR  + D G+GM    L 
Sbjct: 460 GDQLRVNQVFINVIANAVKFTPRGGKVTMKLSEKQTSPEHIHLRCIISDNGIGMKKDFLS 519

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +   PF Q          GTGLGL +   +V+   G   + S   KG+   I  P
Sbjct: 520 RVFLPFEQETAEIAQHFGGTGLGLAITHNLVNLMGGNIDVQSEEGKGSTFTIDLP 574


>gi|262273705|ref|ZP_06051518.1| BarA sensory histidine kinase [Grimontia hollisae CIP 101886]
 gi|262222120|gb|EEY73432.1| BarA sensory histidine kinase [Grimontia hollisae CIP 101886]
          Length = 914

 Score =  290 bits (741), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 95/380 (25%), Positives = 165/380 (43%), Gaps = 27/380 (7%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           +M+I  ++L    E  S G+ ++   G+ILS        F Y +   +  P    +    
Sbjct: 157 EMDISSVKLKQYREIISAGVVLV--LGLILSC------FFAYRLLQDVEMPIKQMISMID 208

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
                      L + +   L             +++ +    L           D+ E  
Sbjct: 209 R-----IRRGHLDVRIEGKLLGELDTLKNGINAMAISLSEYHLEMQQSIDQATSDLRETL 263

Query: 566 QEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           ++      +L  AKK A++ +  KS+FLA +SHE+RTPL  +IGF+  +   +       
Sbjct: 264 EQLEIQNVELDIAKKNAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLSS---- 319

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
              +Y   I++S N +L I+ND+LD SK+E+GK+ L   P   ++++ E + L+   A+E
Sbjct: 320 SQQDYLQTIEKSANNLLTIINDILDFSKLEAGKLLLENIPFDFEDSLDEVMRLLAPMAHE 379

Query: 682 KRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----E 736
           K + +       IP  ++ D   ++Q+  N++ NA  FT  G  I +S           E
Sbjct: 380 KGLELNLRIDPRIPAGVIGDPLRIQQVLTNLIGNATKFTERG-HINVSVELKQQRDERLE 438

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           +   +RDTG+G++  +  +  + F Q   S   R  GTGLGL + + +V    G     S
Sbjct: 439 LQFVIRDTGIGISERQQSQLFQAFRQADTSISRRYGGTGLGLVITQKLVQQMGGDIGFSS 498

Query: 797 TPAKGTLIEIIFPLYDTSHP 816
              +G+       L  T  P
Sbjct: 499 RLHQGSTFWFTMTLIKTDLP 518


>gi|37681007|ref|NP_935616.1| hybrid sensory histidine kinase BarA [Vibrio vulnificus YJ016]
 gi|37199757|dbj|BAC95587.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
          Length = 928

 Score =  290 bits (741), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 80/259 (30%), Positives = 135/259 (52%), Gaps = 10/259 (3%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           + + +  +L  AKK A++ +  KS+FLA +SHE+RTPL  +IGF+  +   +        
Sbjct: 269 QLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTN----S 324

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             +Y   I++S N +L+I+ND+LD SK+E+GK+ L   P    E++ E ISL    A+EK
Sbjct: 325 QTDYLQTIEKSANNLLNIINDILDFSKLEAGKLALENIPFDFRESLEEVISLQATSAHEK 384

Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT----SNEEV 737
            + I       IP  ++ D   ++Q+  N++ N+I FT  G  I +S         + ++
Sbjct: 385 GLEITLKIDPRIPEGVVGDPLRIQQVLTNLVGNSIKFTERG-NIDVSVEMRAQSGDSLDL 443

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
              V+DTG+G++  +  +  + F Q   S   R  GTGLGL + + +V    G+  + S 
Sbjct: 444 QFMVKDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSR 503

Query: 798 PAKGTLIEIIFPLYDTSHP 816
             +G+       L+ T  P
Sbjct: 504 LHQGSTFWFTLRLHSTQMP 522


>gi|327405881|ref|YP_004346719.1| multi-sensor signal transduction histidine kinase [Fluviicola
           taffensis DSM 16823]
 gi|327321389|gb|AEA45881.1| multi-sensor signal transduction histidine kinase [Fluviicola
           taffensis DSM 16823]
          Length = 1089

 Score =  290 bits (741), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 95/369 (25%), Positives = 170/369 (46%), Gaps = 15/369 (4%)

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT---P 506
           E+ +L  +   T++GI I N  GII   N    +L+G+   +   +     +   +    
Sbjct: 443 ELERLSIVASNTNNGITITNAHGIISWINEGFVRLYGWNSSEEFLESKGTSIYNASGLTR 502

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM--HDISEW 564
           + ++ ++ + +        +       +E+K +   +            L     DI++ 
Sbjct: 503 AELSSFIEKAVDEKESIIFQSFKELKNQEQKYIQTSLTPVFDEQDELKFLVYVDTDITDL 562

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
            + +      K+ AE     +  FLA VSHEIRTP+  IIG +  + +++          
Sbjct: 563 LEARELAIREKRKAENALKTQELFLANVSHEIRTPMNGIIGLTRQLNDEKLSH----SQQ 618

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           E  + +D S N +L +VNDLLD+SKI +GKM   +   SL + ++   + +   + EK++
Sbjct: 619 EILDTLDSSANGLLHVVNDLLDVSKIRAGKMTFEYVRFSLRDLLNTFATSISYRSEEKKL 678

Query: 685 LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN----EEVIL 739
                F   +P  I+ D   + QI LNI+ NAI FT  G  I +           E +  
Sbjct: 679 RFNLEFTEKLPNYIIGDPIRLNQILLNIVGNAIKFTIEGS-ITLKVYSIEQKNGMERIHF 737

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            ++DTG+G+  ++ +   + F QI + +     GTGLGL +AK++V+A  G+ ++FS   
Sbjct: 738 EIKDTGIGIPTHKQDFVFENFMQIEDHRTRTTSGTGLGLGIAKSLVEALGGEIHLFSQEG 797

Query: 800 KGTLIEIIF 808
            GT +    
Sbjct: 798 NGTTVVFEL 806


>gi|300931435|ref|ZP_07146764.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           MS 187-1]
 gi|300460805|gb|EFK24298.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           MS 187-1]
 gi|323973080|gb|EGB68274.1| hsp90-like protein [Escherichia coli TA007]
          Length = 593

 Score =  290 bits (741), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 83/371 (22%), Positives = 171/371 (46%), Gaps = 28/371 (7%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            + +         I+E  +DG+  I+R+G + + N A   + GY   +++ +P+++    
Sbjct: 239 AQALRETRTLNDLIIENAADGVIAIDRQGDVTTMNPAAEVITGYQRHELVGQPYSMLF-- 296

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMH 559
              +     + + L                ++ + + L +   ++  +        +   
Sbjct: 297 -DNTQFYSPVLDTLEHGTEHV-ALEISFPGRD-RTIELSVTTSRIHNTHGEMIGALVIFS 353

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           D++  K+ + +++ A+++A        + +A V+HE+R PLTAI G+ ++++ Q   P+ 
Sbjct: 354 DLTARKETQRRMAQAERLAT-----LGELMAGVAHEVRNPLTAIRGYVQILRQQTSDPI- 407

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
              + EY + + +  + +  ++  LL+ S+    +    ++ VSL+  V E + LVQ   
Sbjct: 408 ---HQEYLSVVLKEIDSINKVIQQLLEFSRPRHSQ----WQQVSLNALVEETLVLVQTAG 460

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
            + R+   +   N +  I AD   +KQ+ LNIL NA+    + G+I I T   S+ +  +
Sbjct: 461 VQARVDFISELDNELSPINADRELLKQVLLNILINAVQAISARGKIRIQTWQYSDSQQAI 520

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            + D G G+     +K   PF     S      GTGLGL L++ +++A+ G   + S P 
Sbjct: 521 SIEDNGCGIDLSLQKKIFDPFFTTKAS------GTGLGLALSQRIINAHQGDIRVASLPG 574

Query: 800 KGTLIEIIFPL 810
            G    +I P+
Sbjct: 575 YGATFTLILPI 585



 Score = 40.4 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/117 (10%), Positives = 37/117 (31%), Gaps = 6/117 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G +  ++       G    +++G     +    +    + + D L+          
Sbjct: 263 IDRQGDVTTMNPAAEVITGYQRHELVGQPYSMLF--DNTQFYSPVLDTLEHGTEHVALEI 320

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
            +P     + + +  +   I++ + E  G     I        + +    + ++  +
Sbjct: 321 SFPGRDRTIELSVTTS--RIHNTHGEMIGA--LVIFSDLTARKETQRRMAQAERLAT 373


>gi|323702938|ref|ZP_08114595.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfotomaculum nigrificans DSM 574]
 gi|323532069|gb|EGB21951.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfotomaculum nigrificans DSM 574]
          Length = 623

 Score =  290 bits (741), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 89/377 (23%), Positives = 163/377 (43%), Gaps = 31/377 (8%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
             ++         I+     GI  ++  G I+S +    ++F  P ED++ +  +     
Sbjct: 270 AARLVRAQNYNEIIMANIDAGIIAVDLTGRIVSVSNTARRIFQLP-EDVIDRRLSEVFPP 328

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM--HDI 561
           ++   +   LT+ LS    +      + S  +E+ L     I            +   DI
Sbjct: 329 DS--DIVQMLTKCLSGQETKDA---LIKSPDQERHLLASTSIMVDVDQKLVGAVLGCRDI 383

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           +   + + ++   +++A          +A V+HEI+ PLT+I G+ +  +  +     + 
Sbjct: 384 TLRMRLEEQVRRQERLA-----SLGKLVAGVAHEIKNPLTSISGYIQYWQRSKAPTAKS- 437

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
                 N I R    +  IVN LL  +K  +  +      VSL++ V E ++        
Sbjct: 438 -----LNTIYREVRRLDSIVNKLLFFAKPTNQVL----TRVSLNQFVEEVLNFF-TETQA 487

Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV-ILR 740
             I        N+P +  D   ++Q+ +NI+ NAI   P GG+I++ST H + E +  + 
Sbjct: 488 DGIKFTLKLQENLPDVYIDPGQIEQVLINIIFNAIQAMPGGGEIMVSTGHQAAENLFYIE 547

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           VRDTG G+    L+K   PF         + +GTGLGL +A  ++ A+ G+  + S    
Sbjct: 548 VRDTGCGVPEQLLDKLFDPFFTT------KAKGTGLGLTIAHEIMHAHGGRIEVKSREGA 601

Query: 801 GTLIEIIFPLYDTSHPH 817
           GT ++I+FP    + P 
Sbjct: 602 GTTVQILFPGGRKNEPE 618


>gi|283851328|ref|ZP_06368610.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           sp. FW1012B]
 gi|283573278|gb|EFC21256.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           sp. FW1012B]
          Length = 650

 Score =  290 bits (741), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 117/633 (18%), Positives = 207/633 (32%), Gaps = 66/633 (10%)

Query: 229 SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288
           +    L    +         +   V   +    L +    L ++     ++     ++  
Sbjct: 29  AAFGLLDYAGEKHRYEAELRYDLMVEADQLAANLATPLWVLDKEHVRRHLDGIMQNERVA 88

Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNL-FYANPS 347
              +      +      R+     +   E   L    V+K PI       G +  +A   
Sbjct: 89  AVVVTEAGSPAVYVGRTRDRTWRPSPVTEHPALDGVIVEKRPIRHLDTDLGTVEIFATRQ 148

Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
           F+        D       +   +          +  V+ +R              +    
Sbjct: 149 FV------DQDLEGSFARILLRILGLNACLALVLALVLRWRVIGPLARLERYAARVSLGD 202

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
                         +     M   G   E++  R     +     +   I E  ++GI  
Sbjct: 203 GTG------ETPPLDGLRWEMASLGRTMEEMVNR-----LSSAQRKYRDIFEHATEGIFQ 251

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--NTPSVMNHYLTEILSLDLRQTL 525
              +G ILS N A++ + GY       +  T    Q  ++P      LT +LS D    L
Sbjct: 252 TTFDGRILSANAAMAHMLGYDTPQEFMETVTDVGRQLFHSPDERRRMLTRLLSEDSVPGL 311

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSCYS--LTMHDISEWKQEKNKLSHAKKIAEKE-- 581
           +   L    +   + L I + +    +      T+ D++   + + +L    +   +   
Sbjct: 312 QLRFLRRDGQTIWVLLNIRLVRDGKGNPLYTEGTLTDVTARVRAERRLEILNRHLREAVK 371

Query: 582 -----------------------SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ----- 613
                                     KS FLA VSH++RTPLT+I+GF+++I        
Sbjct: 372 ERTRRLAEKAAELEAANLRLQELDRLKSGFLATVSHDLRTPLTSIMGFAKLITRDFTKFF 431

Query: 614 -------RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
                          R       I+  G  +  +VND LD+SKIESG+       V    
Sbjct: 432 KPFASGHERLTRQADRIAANLGIIESEGERLTRLVNDFLDLSKIESGRAQWRDATVDTAA 491

Query: 667 AVSEAISLVQLYANEK-RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725
            +  A          K  +      A ++P +  D   + Q+ +N+L NA  FT  G  +
Sbjct: 492 LILRATEASSADFAAKPEVAFTMDVAPDLPPLRIDPDRLTQVLVNLLGNAAKFTDQG-HV 550

Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ----IRGEGTGLGLPLA 781
            +     +   + + V DTG G+    LEK    F Q           R +GTGLGL + 
Sbjct: 551 RLRAGV-AGPVLRVEVTDTGQGIPRESLEKIFDKFHQAQAGDTVQEGQRRKGTGLGLAIC 609

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           + +V    G+ +  S   +G+   +  PL   S
Sbjct: 610 RQIVGHYQGRIWAESELGRGSTFLMELPLPHLS 642



 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/330 (9%), Positives = 77/330 (23%), Gaps = 15/330 (4%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL--LKRQNTW 143
            +     G +   +  +   +G    +     + DV   L   P+     L  L  +++ 
Sbjct: 249 IFQTTFDGRILSANAAMAHMLGYDTPQEFMETVTDVGRQLFHSPDERRRMLTRLLSEDSV 308

Query: 144 YGKTTL-WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
            G        +G    + + L    +           G   +             + L++
Sbjct: 309 PGLQLRFLRRDG--QTIWVLLNIRLVRDGKGNPLYTEG--TLTDVTARVRAERRLEILNR 364

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
                 + +      EK      +        R+K+   +   +              L+
Sbjct: 365 HLREAVKERTR-RLAEKAAELEAANLRLQELDRLKSGFLATVSHDLRTPLTSIMGFAKLI 423

Query: 263 TSEESSLPEQEDFHTINLNQYTKK--QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
           T + +   +        L +   +     G +++  +     ++     S          
Sbjct: 424 TRDFTKFFKPFASGHERLTRQADRIAANLGIIESEGERLTRLVNDFLDLSKIESGRAQWR 483

Query: 321 LTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL---LDAPKLSD 377
               TVD   +        +  +A    +  T   + D   +      L   L     + 
Sbjct: 484 --DATVDTAALILRATEASSADFAAKPEVAFTMDVAPDLPPLRIDPDRLTQVLVNLLGNA 541

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
                   +               T     
Sbjct: 542 AKFTDQGHVRLRAGVAGPVLRVEVTDTGQG 571


>gi|218676627|ref|YP_002395446.1| putative histidine kinase [Vibrio splendidus LGP32]
 gi|218324895|emb|CAV26666.1| putative histidine kinase [Vibrio splendidus LGP32]
          Length = 1067

 Score =  290 bits (741), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 82/255 (32%), Positives = 137/255 (53%), Gaps = 12/255 (4%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           + ++ K     AK  A + S  KS FLA +SHEIRTPL  +IG SE++ +    P     
Sbjct: 381 DAERAKEDAEEAKDHAIQASKAKSSFLANMSHEIRTPLNGVIGISEILSDTPLTPT---- 436

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             +Y + I+ S  L+L ++ND+LD SKIESG + +     S+ E++ +  S+V   A E+
Sbjct: 437 QRDYVDTIETSSQLLLSLINDILDFSKIESGMLLISPHSASIRESIYDIASIVAPKAKEQ 496

Query: 683 RILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTT----HTSNEEV 737
           +I +    + + P R++ D   ++QI +N +SNA+ FT  GG + +S        +N  +
Sbjct: 497 KISVNVDISPDTPARVMIDDHRLRQILMNFMSNAVKFTAEGG-VTLSIQTLNKAENNVTL 555

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
              VRDTG+G+   + ++  +PF Q  +S   +  GTGLGL ++  +V+   G+  + S 
Sbjct: 556 RFSVRDTGIGIDKQQQKQIFEPFAQEDDSTTRQFGGTGLGLAISTQLVELMGGQIQLDSV 615

Query: 798 PAKGTLIEI--IFPL 810
             KG+        P+
Sbjct: 616 KGKGSCFYFDLELPI 630


>gi|153947415|ref|YP_001402095.1| phosphate regulon sensor protein [Yersinia pseudotuberculosis IP
           31758]
 gi|152958910|gb|ABS46371.1| phosphate regulon sensor kinase PhoR [Yersinia pseudotuberculosis
           IP 31758]
          Length = 438

 Score =  290 bits (741), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 66/358 (18%), Positives = 132/358 (36%), Gaps = 35/358 (9%)

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
           +  S  E+  D + I   +G I   N    +L G+   +   +     L     S     
Sbjct: 99  RFRSGAESLPDAVVITTVDGNIFWCNGLAQQLLGFRWPEDNGQHILNLLRYPEFSQYL-- 156

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572
                    +QT  +           +  R++           +   D+++ +Q +    
Sbjct: 157 --------QQQTFSRPLTLQLNNGYYVEFRVMPY---SEGQLLMVARDVTQMRQLEG--- 202

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
                       + +F A VSHE+RTPLT + G+ E++ +Q        +       +  
Sbjct: 203 -----------ARRNFFANVSHELRTPLTVLQGYLEMMHDQELAGPLRDKA---LGTMQE 248

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN-EKRILIRTSFA 691
               +  +V  LL +S+IE+       E V +   +      VQ  +N    I  R +  
Sbjct: 249 QTKRMDGLVKQLLTLSRIEAAPNVDLNERVDIPLMLKILQHEVQALSNGRHEITFRVN-- 306

Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751
            +  ++  +   ++    N++ NA++ TP G +I +    T       +V D G G+   
Sbjct: 307 -DQLKVFGNEDQLRSAVSNLVYNAVNHTPEGTKIEVCWQQTPQG-AQFQVSDNGPGIPPE 364

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            + +  + F ++  ++  +  G+GLGL + K  +  +  +  + S    GT      P
Sbjct: 365 HVPRLTERFYRVDKARSRQTGGSGLGLAIVKHALSHHDARLVVMSEIGLGTRFIFTLP 422


>gi|291514812|emb|CBK64022.1| Signal transduction histidine kinase [Alistipes shahii WAL 8301]
          Length = 1049

 Score =  290 bits (741), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 85/397 (21%), Positives = 174/397 (43%), Gaps = 29/397 (7%)

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI-AIIN-REGIIL-STNRA--VSK 483
             +    +       ++K++    +L   L+  +D +    + R+G IL   N++     
Sbjct: 521 HIDIFCLDGTALYKTQQKLDSINHKLAMALD-VADIVPWKWDLRKGSILCDVNKSVHGQM 579

Query: 484 LFGYPVE---DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL-- 538
           L G   +   ++  + +   + +     +     ++++    +  E+  + S    +   
Sbjct: 580 LAGTNADQQLEVPSESYFAKIHKEDRERVRRAYDDLIAGRKDKVREEYRVASDAGGRWHL 639

Query: 539 --LSLRIIIKKLPFSSC---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
             +  +  + +            +   I+  K+ +  L  A+  AE+ +  KS FLA +S
Sbjct: 640 DWVEAQATVDQRDDDGRPLNLIGSSLVITPRKRLEQDLRSARDRAEESNRLKSAFLANMS 699

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HEIRTPL AI+GFS ++              EY + I+ +  L+L ++ D+LD+SKIE+G
Sbjct: 700 HEIRTPLNAIVGFSSILAETD----EEQEKREYISIIENNNALLLQLIGDILDLSKIEAG 755

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713
            +  +F    L+E + E  +++++   E  + +      +     +D   + Q+ +N+L+
Sbjct: 756 TLEFNFSDFELNELMHEKENIIRMKTAE-GVELIFEPGLDACLFHSDRNRLSQLLINLLT 814

Query: 714 NAIHFTPSGGQIIISTTHTSNE-EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           NA  FT  G    I   + +    +   V DTG G+      +    F ++ + +    +
Sbjct: 815 NAAKFTAKGS---IRFGYRAEGSRLRFYVSDTGCGIPPEGQRRIFDRFVKLNSFK----Q 867

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GTGLGLP+ K++V+   G+  + S   +GT      P
Sbjct: 868 GTGLGLPICKSIVEHLGGEIGVKSEEGRGTTFWFTLP 904


>gi|255530499|ref|YP_003090871.1| ATPase [Pedobacter heparinus DSM 2366]
 gi|255343483|gb|ACU02809.1| ATP-binding region ATPase domain protein [Pedobacter heparinus DSM
           2366]
          Length = 1161

 Score =  290 bits (741), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 98/387 (25%), Positives = 170/387 (43%), Gaps = 50/387 (12%)

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSK-----LFGYPVEDILRKPFTVFLEQNTPSV 508
           L +I E+   G+            N AV++     LF    +            + T   
Sbjct: 378 LQAITESIGVGV------------NSAVARVKLRALFEQTQQQAEELESQQEELRTTNEE 425

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568
           + +   ++ + +    +++  L  T  E    L    ++L   +             Q K
Sbjct: 426 LVYKSEQLQASEEELRVQQEELRQTNSE----LEEKAQQLEERNIAV---------NQAK 472

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
             +S   +  E  S +KS+FLA +SHE+RTPL +I+  + ++K  R   L N   I+YA 
Sbjct: 473 EAMSLKAEELEISSKYKSEFLANMSHELRTPLNSILILARILKENRPENL-NEDQIKYAG 531

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV--SEAISLVQLYANEKRILI 686
            I  +G  +L ++ND+LD+SKIESGK++L   P  L   V   +  +L    A  K+I  
Sbjct: 532 VIHNAGTDLLTLINDILDLSKIESGKLDLSILP--LKPLVIKQDMEALFNELAKSKKISF 589

Query: 687 RTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE--------- 736
            T     +P  +L D   ++QI  N+LSNA  FTP  G+I ++ +  S            
Sbjct: 590 HTVLDKELPATLLTDQSRLEQIVKNLLSNAFKFTPEHGEITMTISKASAGTLFFSRQLKT 649

Query: 737 -----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
                + + V+D+G+G+   + +   + F Q   S   +  GTGLGL ++K +     G+
Sbjct: 650 TTEDIIAISVKDSGIGIPADKQKLIFEAFQQADGSTSRKYGGTGLGLSISKELAHILGGE 709

Query: 792 FYIFSTPAKGTLIEIIFPLYDTSHPHD 818
             + S   +G+   +  P  + + P +
Sbjct: 710 IQVNSKQGEGSTFTLYLPKNNATAPEN 736


>gi|160880969|ref|YP_001559937.1| multi-sensor hybrid histidine kinase [Clostridium phytofermentans
           ISDg]
 gi|160429635|gb|ABX43198.1| multi-sensor hybrid histidine kinase [Clostridium phytofermentans
           ISDg]
          Length = 860

 Score =  290 bits (741), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 93/362 (25%), Positives = 167/362 (46%), Gaps = 29/362 (8%)

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           S++E   + + +++ +  +L  N A  KLF     ++L  P      +       + + E
Sbjct: 233 SVIEVMDEALVVVDADFHLLDFNPAAKKLFPELKIEVLNSPLNKLSNELDCLFHQNQIYE 292

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISEWKQEKNKLSHA 574
                             KE +  +  +           +S  + DI+E       L   
Sbjct: 293 FQ----------------KENRTYNAHLNKIYYNDDIVGHSAWIFDITESNNYMKNLIEM 336

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
           ++ AEK +S KS FLA +SHEIRTPL AIIG ++++ ++      +         I  +G
Sbjct: 337 REQAEKANSAKSIFLAHMSHEIRTPLNAIIGLTDILLHKD----TDFELHNDILNIKHAG 392

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
             +L ++ND+LD++KIESGK+ L  EP  L   V E I+++ +    K + ++ S ++ I
Sbjct: 393 GTLLSLINDVLDLTKIESGKLTLVDEPYKLTSVVHEVINIIGVKLMSKPVSLQVSISDQI 452

Query: 695 PR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH------TSNEEVILRVRDTGVG 747
           P+    D   ++Q+ +N+++NA+ FT  G  I +          T   ++I  VRDTG+G
Sbjct: 453 PKYFYGDELRLRQVLINLMNNAVKFTERG-TISLQVELSSFDLDTQTAQLIFHVRDTGLG 511

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           +   + ++    F Q      +  EG+GLGL + K ++++  G   + S    G+     
Sbjct: 512 IAKDDQKRIFHSFEQGSVGSDVLVEGSGLGLTICKRIIESAGGAIKVKSELGVGSDFSFT 571

Query: 808 FP 809
            P
Sbjct: 572 LP 573


>gi|320155329|ref|YP_004187708.1| BarA sensory histidine kinase ( VarS GacS) [Vibrio vulnificus
           MO6-24/O]
 gi|319930641|gb|ADV85505.1| BarA sensory histidine kinase (VarS GacS) [Vibrio vulnificus
           MO6-24/O]
          Length = 928

 Score =  290 bits (741), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 80/259 (30%), Positives = 135/259 (52%), Gaps = 10/259 (3%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           + + +  +L  AKK A++ +  KS+FLA +SHE+RTPL  +IGF+  +   +        
Sbjct: 269 QLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTN----S 324

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             +Y   I++S N +L+I+ND+LD SK+E+GK+ L   P    E++ E ISL    A+EK
Sbjct: 325 QTDYLQTIEKSANNLLNIINDILDFSKLEAGKLALENIPFDFRESLEEVISLQATSAHEK 384

Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT----SNEEV 737
            + I       IP  ++ D   ++Q+  N++ N+I FT  G  I +S         + ++
Sbjct: 385 GLEITLKIDPRIPEGVVGDPLRIQQVLTNLVGNSIKFTERG-NIDVSVEMRAQSGDSLDL 443

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
              V+DTG+G++  +  +  + F Q   S   R  GTGLGL + + +V    G+  + S 
Sbjct: 444 QFMVKDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSR 503

Query: 798 PAKGTLIEIIFPLYDTSHP 816
             +G+       L+ T  P
Sbjct: 504 LHQGSTFWFTLRLHSTQMP 522


>gi|291570461|dbj|BAI92733.1| two-component hybrid sensor and regulator [Arthrospira platensis
           NIES-39]
          Length = 1351

 Score =  290 bits (741), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 114/627 (18%), Positives = 222/627 (35%), Gaps = 111/627 (17%)

Query: 276 HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV 335
            ++ L     +    +L     +  E L   N         + E       +        
Sbjct: 325 PSLRLTVPPGEDELSSLGKTINQMLEALEQAN-----IQSQDSEERYRLMAEYSTDLITH 379

Query: 336 Y-SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394
           +   G + YA+P+  LL  Y+    I      S       L+  +    ++L +     +
Sbjct: 380 HSRRGLIRYASPACSLLLGYEPESLIGQHP--SKFFHPDDLNTLSKTLEIVLSQK----V 433

Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE---- 450
           + +        N E     T        +        G+  +  D +  +++++      
Sbjct: 434 SYTLTYRIRHKNGEYIWFETTSRAIYHPETGRVQEILGVSRDISDRKQREQELQDSEASI 493

Query: 451 --------------VMQLCSILE------ATSDGIAIINREGIILSTN-----RAVSKLF 485
                           QL  IL+          GI        IL  N      +   + 
Sbjct: 494 RSLYQITSSRHLDWQEQLQQILKLGCDKFHLEVGII-----NQIL--NLGTPQPSAQIMA 546

Query: 486 GYPVE--DILRKPFT---VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE----- 535
           G            F      +     +        +L        ++             
Sbjct: 547 GIDHNNSWSFGDNFDLNNPLILATLKAENPLIFESVLVSGFPSYADENCWQIEAYMAIPI 606

Query: 536 ---EKLLSLRIIIKKLPFSSCYSLTMHDI-----------SEWKQEKNKLSHAKKIAEKE 581
               ++        + P +  +     ++            E +Q   +LS A+  A   
Sbjct: 607 KVYGQVYGTLCFWSQNPLNEPFRAVDQELLKLMAQWIGSEIERQQTAQELSEARDEALAA 666

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
           +  KS+FLA +SHEIRTP+ A+IG + ++ +     +      ++   I  S + +L ++
Sbjct: 667 TRAKSEFLATMSHEIRTPMNAVIGMTGLLLDTPLSLV----QQDFVETIRSSSDALLSLI 722

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILAD 700
           ND+LD SKIESGK++L   P SL   + E++ L+   A  K + +        P  ++ D
Sbjct: 723 NDILDFSKIESGKLDLEAFPFSLRTCLEESLDLLATKAASKSLELGYFIDAYTPNEVVGD 782

Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTT---------------HTSNEEVILRVRDTG 745
           +  V+QI +N+LSNA+ FT  G ++++S +               ++++ ++ + V DTG
Sbjct: 783 MARVRQILVNLLSNAVKFTARG-EVLVSVSAKPLFSDLELTAKSMYSTHYQIEVAVSDTG 841

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS--------- 796
           +G+    + +  K F Q+  S   +  GTGLGL +++ + +   GK ++ S         
Sbjct: 842 IGIPVDRMNRLFKSFSQVDASTNRQYGGTGLGLAISQRLAEMMGGKMWVVSGDAIGGHPP 901

Query: 797 --------TPAKGTLIEIIFPLYDTSH 815
                   TP +G+       +  +S 
Sbjct: 902 ENWQINKDTPTQGSTFYFSI-VVQSSQ 927



 Score = 75.4 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 40/334 (11%), Positives = 83/334 (24%), Gaps = 14/334 (4%)

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
                 +L         +   S         ++  +  +      L             +
Sbjct: 166 LPEGPLLLSARPILTSIARGPSRGTLVVGRYLDAKEIDRLTQITQLSLEITPWSPLDPQQ 225

Query: 307 NHPS--LSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364
                            T   +   P+         L   N   L L             
Sbjct: 226 TQEIINTEDPIRVQPVDTSTILGSIPL---------LDIYNRPILNLQIKSDRPIFRQGR 276

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
                L          +  + +   ++  +A    L         S   +        + 
Sbjct: 277 TSLIYLTFSLFLIGIILSAITILVFEKLILARLLDLTYKINQIGQSRDPSLRLTVPPGED 336

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
             +     I            + +    +   + E ++D I   +R G+I   + A S L
Sbjct: 337 ELSSLGKTINQMLEALEQANIQSQDSEERYRLMAEYSTDLITHHSRRGLIRYASPACSLL 396

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
            GY  E ++ +  + F   +  + ++  L  +LS  +  TL         E         
Sbjct: 397 LGYEPESLIGQHPSKFFHPDDLNTLSKTLEIVLSQKVSYTLTYRIRHKNGEYIWFETTSR 456

Query: 545 IKKLPFSSCY---SLTMHDISEWKQEKNKLSHAK 575
               P +           DIS+ KQ + +L  ++
Sbjct: 457 AIYHPETGRVQEILGVSRDISDRKQREQELQDSE 490



 Score = 48.5 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/122 (11%), Positives = 33/122 (27%), Gaps = 4/122 (3%)

Query: 93  GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPI 152
           G ++  S      +G     +IG           ++  +   +++  Q   Y  T     
Sbjct: 384 GLIRYASPACSLLLGYEPESLIGQHPSKFFHPDDLNTLSKTLEIVLSQKVSYTLTYRIRH 443

Query: 153 EGTNLYVPIDLAALPIYS-RNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
           +    Y+  +  +  IY             G+              +  +     L++I 
Sbjct: 444 KN-GEYIWFETTSRAIYHPETGRVQ--EILGVSRDISDRKQREQELQDSEASIRSLYQIT 500

Query: 212 KG 213
             
Sbjct: 501 SS 502


>gi|284039446|ref|YP_003389376.1| PAS/PAC sensor signal transduction histidine kinase [Spirosoma
            linguale DSM 74]
 gi|283818739|gb|ADB40577.1| PAS/PAC sensor signal transduction histidine kinase [Spirosoma
            linguale DSM 74]
          Length = 1029

 Score =  290 bits (741), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 110/778 (14%), Positives = 255/778 (32%), Gaps = 107/778 (13%)

Query: 92   HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQNTWYGKTTLW 150
                  +++E  +  G      +G RL +V   +      H   ++++ + +       +
Sbjct: 296  DLRYTLVNQERLRLAGKPESFFLGKRLTEVYPGMVESGVFHRWVEVIETRQS-QKFEVNY 354

Query: 151  PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIV---HVNRVDNDPRALGKRLDKKFSHL 207
              +G + +        P              GIV          +     ++  +  + +
Sbjct: 355  HYDGFDDWSLCL--GSPFGD-----------GIVVSYTDITKQKEDELQARQQAELLNSI 401

Query: 208  HEIKKGHSSV---EKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY----- 259
                +   S     ++         P       +++         K  +L+         
Sbjct: 402  QNTSQIGISACKSIRDSAGTIVDFQPIFRNATASQLHRHAPNEPIKATLLEDMPSLKPSG 461

Query: 260  ---PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
                 +   ES  P+Q + H  N       ++      +       L+  +         
Sbjct: 462  VFDRYVRVVESGQPDQFEQHFSNGGLDGWFEFSVQPWED-GFVLNILNTTSLRRAEREKV 520

Query: 317  EGENLTPETVDKCPIPFFVYS----------HGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
            +   +  + +D       +                   N      T +   +  +    +
Sbjct: 521  QQSIILQQVIDNSQAGLVLAQPERDESGTIVDFRYVLTNEYNARTTGWTVAEMADAL--V 578

Query: 367  STLLDAPKLSD--NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
            S+L    + SD     ++ V   ++ R      A      W   +   +           
Sbjct: 579  SSLFPGWQDSDLFRRYVEVVESGQAQRLTFPYEAYQMNG-WFDGSFNCV----------- 626

Query: 425  PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA----IINREGIILST--- 477
              +        +    +  +   +     L  ++  T   I     I +  G I+     
Sbjct: 627  --DGYLLYTYTDVTALKEAELAQQQYASLLEQVMNMTPAAIVLNESIRDETGQIVDLRMV 684

Query: 478  --NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
              N   +KL   P++ +  +  + ++  +  + +     +++       LE        +
Sbjct: 685  RLNHMATKLMKNPIDKVQFRRVSKYIPGSLDTPLFAQCKQVIETGNPARLEVPW-----D 739

Query: 536  EKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
            ++     +      F     LT+ DI+  ++ + KL  A    ++ + +   F    SH+
Sbjct: 740  DRWYDFSLA----RFGDGVLLTVQDITPMREYRQKLELANLELKRSNENLQSFAFVSSHD 795

Query: 596  IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
            ++ PL  II F++++  Q  G    P   +    I+ S N +  ++ DLL  S++++ + 
Sbjct: 796  LQEPLRKIISFADILSTQYAGQFDAP-ATDIVKRINTSANRMRLLIQDLLAYSQVDTRED 854

Query: 656  NLHFEPVSLDEAVSEAIS-LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714
            +  FEPV+L   + E     + +   +    I       +P ++AD   ++Q+  N+LSN
Sbjct: 855  S--FEPVNLTRLIGELQEHELWMTIQQSNAEIHL---GELPILMADRLQMRQLFQNLLSN 909

Query: 715  AIHFTPSGGQ--IIISTTHTSNEEV--------------------ILRVRDTGVGMTNYE 752
            AI F P G    I +S+    + +V                     + V D G+G     
Sbjct: 910  AIKFCPKGVTPDITVSSRLVKHSDVSVKLMSAKLEKNRAMETWFAEISVSDNGIGFDEKY 969

Query: 753  LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            L++  + F ++    + +  G+G+GL +   + + + G     S P +G+   +  P+
Sbjct: 970  LDRIFQVFQRLHG--RSQYSGSGIGLAICYKIAERHNGAITASSQPGQGSTFRVYLPI 1025



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 51/511 (9%), Positives = 139/511 (27%), Gaps = 53/511 (10%)

Query: 90  DAHGYLK-----EISEELPKTIGNYAFKMIGMRLCDVSDILHID-PNNHIGDLLKRQNTW 143
           +A G +       ++    +  G    ++ G  +  +  +            +++R    
Sbjct: 31  NADGKITDFSLVMLNSSTQEMWGYPQRELTGRSISQLFTVADRQFLLQQFSVVVERGRAV 90

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +         ++ V   L        +     +    IV   + +  P+     L K 
Sbjct: 91  RFEMEYSRPGNQSVQVYDMLVTKL---EDGVLVNYGE--IVPPAQTERVPQQQTDLLRKL 145

Query: 204 FSH-------LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256
           F         L  ++     +E     + +Q S      ++++V            +   
Sbjct: 146 FHESPCSMQLLEPVRDAEGKIEDFICRMANQASLNQMRVVESQVVGKRMLPLFPSLLSSG 205

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
               L+T  E+   +Q++ +    +            N+   S  +       +   Y  
Sbjct: 206 VFDRLVTVVETGETQQQELYYKGDDDQIWIDAKYIRHNDGVISMSFDLTATRLAEQKYQQ 265

Query: 317 EGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLL-TKYKSVDDIEIAGGLSTLLDA--- 372
           + E L    +D       V     +  A+   + L     + + + +AG   +       
Sbjct: 266 QAE-LYKTILDTALTSITVLEA--VRDADDKIIDLRYTLVNQERLRLAGKPESFFLGKRL 322

Query: 373 ----PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
               P + ++      +     R         H   ++  +               P   
Sbjct: 323 TEVYPGMVESGVFHRWVEVIETRQSQKFEVNYHYDGFDDWSLCL----------GSPFGD 372

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII----NREGIILST-----NR 479
                  +    + ++ +   +   L SI   +  GI+      +  G I+       N 
Sbjct: 373 GIVVSYTDITKQKEDELQARQQAELLNSIQNTSQIGISACKSIRDSAGTIVDFQPIFRNA 432

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
             S+L  +   + ++      +    PS +      ++        E+       +    
Sbjct: 433 TASQLHRHAPNEPIKATLLEDMPSLKPSGVFDRYVRVVESGQPDQFEQHFSNGGLDG-WF 491

Query: 540 SLRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570
              +          + L + + +  ++ + +
Sbjct: 492 EFSVQPW----EDGFVLNILNTTSLRRAERE 518


>gi|261324039|ref|ZP_05963236.1| histidine kinase [Brucella neotomae 5K33]
 gi|261300019|gb|EEY03516.1| histidine kinase [Brucella neotomae 5K33]
          Length = 843

 Score =  290 bits (741), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 132/724 (18%), Positives = 264/724 (36%), Gaps = 49/724 (6%)

Query: 110 AFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN--TWYGKTTLWPIEGTNLYVPIDLAALP 167
              ++G                  G  L+ Q+        +    +     + ++     
Sbjct: 134 RADVVGQLPDACGAPQDRPAFLAFGRWLRPQSVTALERAISTLREQARAFDLTVETVNGS 193

Query: 168 IYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ 227
           +   +   SG  GF +    +     +A    L+ +   L +  +    +          
Sbjct: 194 LLDVHGRTSG--GFAVA-CFQSLQGVQAERASLEAQNRELADRIELMRRLLDRIEQPAWL 250

Query: 228 QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287
           +     +   N   +L    A+    + +E   L  ++     E++ F    + +     
Sbjct: 251 RDGNGRIEWVNLAYALAVDMANASQ-VISEGRELFGAQARQRLERDRFAEPVVQEQLTAV 309

Query: 288 YFGTLQ--------NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG 339
             G  +          S             ++            ET+D+      ++   
Sbjct: 310 VHGDRRVFDVIDVSAESGSVGLGFDLTEVQAVRDELSRTLKSHAETLDQLSTAVAIFDPE 369

Query: 340 -NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398
             L + N +F+ L     V  +E     + + D  +       +P      D    A  A
Sbjct: 370 MKLQFFNQAFVKLWGL-DVAWLETRPSNTLIFDRLRAEGKLPEQPEWRKWKDSLLSAYRA 428

Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI- 457
                    E    M  +P  +  +   N    G      +    K ++E     L  + 
Sbjct: 429 V--------EPEEHMWHLPDTRTMRVVANPHPQGGVTWFFENMTEKFELEGRYNTLIKVQ 480

Query: 458 ---LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYL 513
              L+  ++ +A+   +G +  +N + + L+  P E +      ++  +       +   
Sbjct: 481 GETLDHLAEAVAVFGSDGRLRLSNPSFAALWSLPSEMVREGTHISIIAKLCNQRGGDGLW 540

Query: 514 TEILSLDLRQTLEKITL---GSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570
            + +S       ++          +  +LS  ++           LT  D+++  + +  
Sbjct: 541 EDFVSTVTGFLDQRDGRMGQVELSDGAILSFAVVPLP---KGQTMLTFIDVTDTVRVERA 597

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           L    +  E     K+DF+  VS+E+R+PLT IIGF+E+++   FG L N R +EY ++I
Sbjct: 598 LKEKNEALELADQIKNDFVQHVSYELRSPLTNIIGFTELLQTPAFGSL-NERQLEYLDHI 656

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
             S +++L IVND+LD++ +++G M L    VS+ EA+S A S V     +  I +    
Sbjct: 657 STSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEAISAAASRVSERLRDHNIGLDVDI 716

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
           A+++    AD   V+Q+  N+LSNA+++ P G  I++        +V+  V D G GM +
Sbjct: 717 ADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVLQVA-RDGADVVFAVHDDGHGMPS 775

Query: 751 YELEKAMKPFGQIPN-----SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
             L+   K F   PN        +          + K+ V+ + G+  I +   +GT + 
Sbjct: 776 EVLDTVFKRFQSYPNGGRRRGAGLGLA-------IVKSFVELHGGRVEIDTGEERGTTVI 828

Query: 806 IIFP 809
             FP
Sbjct: 829 CRFP 832


>gi|254504034|ref|ZP_05116185.1| hypothetical protein SADFL11_4073 [Labrenzia alexandrii DFL-11]
 gi|222440105|gb|EEE46784.1| hypothetical protein SADFL11_4073 [Labrenzia alexandrii DFL-11]
          Length = 866

 Score =  290 bits (741), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 104/663 (15%), Positives = 220/663 (33%), Gaps = 52/663 (7%)

Query: 175 FSGFRGFG--IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP 232
           F+G  GF          +    A    L+     + +I        K   ++   ++   
Sbjct: 84  FAGAIGFLRLSARPGEANPLASAFVDTLEDGAL-ITDIDGRLVYANKAYAELTGAETAAD 142

Query: 233 HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL 292
              ++   SS  +  A       ++        +  +                +     L
Sbjct: 143 IRVVERVFSS--DPDATDAIFRLSQAMRDGRKAQEEIRMPFPLGRAEGKARWYRVSVRPL 200

Query: 293 QNNSKESFEYLS------HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYAN 345
           Q +   S + ++           +      +        +D  P  F      G + Y N
Sbjct: 201 QVSGNASGKVMAVWQLSDITRDRAEQENSFQELQRVINFLDHAPAGFLSSDAQGRIVYLN 260

Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405
            +      Y          GLS +     +  +       +        + +  L  +  
Sbjct: 261 ATLADWLGYDLAQFDAGDLGLSDI-----VRGDGTELIRSVKGQAGEVKSETFDLDFVTR 315

Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465
           N    L +  +      +         +             +    ++       T   I
Sbjct: 316 NG-LGLPVRLLHRVPFGENGTQGDSRTLVLNRSRGEEASEALRAAEVRFARFFNNTPIAI 374

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
           A +++EG +L TN    KLFG    D        ++  N    +   L+   +       
Sbjct: 375 ASLDKEGRVLRTNAPFLKLFGAVDTDDQAPKLEAYVADNGQEDLRKALSAAANGISEIAP 434

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM--HDISEWKQEKNKLSHAKKIAEKESS 583
             I L    + +  +  +   +       +  +   + ++ +  + + + ++K+      
Sbjct: 435 IDIPLVEGNDPRSATFYVSAVQEGEGDGEAAIVYALETTQQRALEAQFAQSQKM-----Q 489

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
                   V+H+    LTAIIGFS+++         +P + +  N I ++ N    +V  
Sbjct: 490 AIGQLAGGVAHDFNNVLTAIIGFSDLLLASHRPT--DPSFQDIMN-IKQNANRAAGLVRQ 546

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703
           LL  S+    +  L  + + L++ +++ +S++      +++ ++     ++  ++ADL  
Sbjct: 547 LLAFSR----RQTLRPQQLELNDVLAD-LSILLDRLLGEKVDLKVIHGRDLWPVMADLNQ 601

Query: 704 VKQIALNILSNAIHFTPSGGQIIISTT---------------HTSNEEVILRVRDTGVGM 748
           ++Q+ +N+  NA    P GG++ IST                    E +++ V DTG G+
Sbjct: 602 LEQVIVNLAVNAGDAMPDGGRLTISTRNVSESESTQFENTRGMPPGEYMLVEVEDTGHGI 661

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
               +EK   PF     S +  G+GTGLGL     +V    G  +  S   +GT   +  
Sbjct: 662 PPDVMEKIFDPFF----STKEVGKGTGLGLSTVYGIVKQTGGFIFCTSEIDEGTTFRLFL 717

Query: 809 PLY 811
           P Y
Sbjct: 718 PRY 720



 Score = 68.1 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 46/385 (11%), Positives = 87/385 (22%), Gaps = 27/385 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIG---MRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            D  G L   ++   +  G      I          SD    D    +   ++       
Sbjct: 118 TDIDGRLVYANKAYAELTGAETAADIRVVERVFS--SDPDATDAIFRLSQAMRDGRKAQE 175

Query: 146 KTTLWPIEGTNLY--VPIDLAALPIYSRNREFSG--FRGFGIVHVNRVDNDPRALGKRLD 201
           +  +    G          ++  P+   +   SG     + +  + R   +     + L 
Sbjct: 176 EIRMPFPLGRAEGKARWYRVSVRPLQ-VSGNASGKVMAVWQLSDITRDRAEQENSFQELQ 234

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK----NKVSSLTEYYAHKDDVLKTE 257
           +  + L     G  S + +   ++   +    L       +            D      
Sbjct: 235 RVINFLDHAPAGFLSSDAQGRIVYLNATLADWLGYDLAQFDAGDLGLSDIVRGDGTELIR 294

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN----SKESFEYLSHRNHPSLSA 313
                  E  S     DF T N      +                    L+       S 
Sbjct: 295 SVKGQAGEVKSETFDLDFVTRNGLGLPVRLLHRVPFGENGTQGDSRTLVLNRSRGEEASE 354

Query: 314 YFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                E       +  PI    +   G +   N  FL L      DD   A  L     A
Sbjct: 355 ALRAAEVRFARFFNNTPIAIASLDKEGRVLRTNAPFLKLFGAVDTDD--QAPKLEA-YVA 411

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
               ++                     L        +  + TF          +      
Sbjct: 412 DNGQEDLRKALSAAANGISEIAPIDIPL----VEGNDPRSATFYVSAVQEGEGDGEAAIV 467

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSI 457
              E    R  + +   +  ++ +I
Sbjct: 468 YALETTQQRALEAQF-AQSQKMQAI 491


>gi|86145206|ref|ZP_01063537.1| putative histidine kinase [Vibrio sp. MED222]
 gi|85836783|gb|EAQ54903.1| putative histidine kinase [Vibrio sp. MED222]
          Length = 1067

 Score =  290 bits (741), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 82/255 (32%), Positives = 137/255 (53%), Gaps = 12/255 (4%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           + ++ K     AK  A + S  KS FLA +SHEIRTPL  +IG SE++ +    P     
Sbjct: 381 DAERAKEDAEEAKDHAIQASKAKSSFLANMSHEIRTPLNGVIGISEILSDTPLTPT---- 436

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             +Y + I+ S  L+L ++ND+LD SKIESG + +     S+ E++ +  S+V   A E+
Sbjct: 437 QRDYVDTIETSSQLLLSLINDILDFSKIESGMLLISPHSASIRESIYDIASIVAPKAKEQ 496

Query: 683 RILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTT----HTSNEEV 737
           +I +    + + P R++ D   ++QI +N +SNA+ FT  GG + +S        +N  +
Sbjct: 497 KISVNVDISPDTPARVMIDDHRLRQILMNFMSNAVKFTAEGG-VTLSIQTLNKAENNVTL 555

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
              VRDTG+G+   + ++  +PF Q  +S   +  GTGLGL ++  +V+   G+  + S 
Sbjct: 556 RFSVRDTGIGIDKQQQKQIFEPFAQEDDSTTRQFGGTGLGLAISTQLVELMGGQIQLDSV 615

Query: 798 PAKGTLIEI--IFPL 810
             KG+        P+
Sbjct: 616 KGKGSCFYFDLELPI 630


>gi|255010868|ref|ZP_05282994.1| putative two-component system, sensor kinase [Bacteroides fragilis
           3_1_12]
          Length = 537

 Score =  290 bits (741), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 98/517 (18%), Positives = 182/517 (35%), Gaps = 34/517 (6%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFF---VYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365
              ++  D+      E +D  P P     +       Y N    L +     D +     
Sbjct: 31  RKSASADDDYRRFLFEILDNLPFPIMVKDIQEQFKYTYWNKEAELQSGISRKDAVG---- 86

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSD--RTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
                    +      K       D  +      A    +  + +    +       + +
Sbjct: 87  ----FSDADIFGEERGKQYRKIDEDLVKAGKPYKAEERYVTADGKVHDTLVVKSIISSGK 142

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLC-------SILEATSDGIAIINREGIILS 476
             + +       E    ++ +R++     QL          L +   G+  I+R   +  
Sbjct: 143 LGKWL--LVARWEITQLKMYERELLAAKEQLEGAVRKQKLALRSIDFGLIYIDRNYKVQW 200

Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
              +  K        I          +           E +S                E 
Sbjct: 201 EETSNIKNLVVGRHYIPGTTCYRTTGRGDKPCKRCAFQEAISTGKMVRHITHVDHVDFEI 260

Query: 537 KLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
               +              L   DI+E  +    L  AK+ AE+ +  KS FLA +SHEI
Sbjct: 261 TATPVYSDTG--GEIIGGLLRFEDITEKLKVDRMLQEAKEKAEESNRLKSAFLANMSHEI 318

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTPL AIIGFS++I              EY   +  +  L+L +++D+LD+SKIE+G M+
Sbjct: 319 RTPLNAIIGFSDLICQTD----DAEEKEEYIRIVTSNNELLLQLIDDILDLSKIEAGTMD 374

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716
             +    ++E + +    +Q       + I  +       I  D   + Q+ +N+++NA+
Sbjct: 375 FSYALTDINELMEDICLQMQQKNQRPGVQILFTEKEPCCVINTDRLRLSQVIINLMNNAM 434

Query: 717 HFTPSGGQIIISTTHT-SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
            FT  G  I +         E+   V+DTG+G+   + EK  + F ++ +      +GTG
Sbjct: 435 KFTAEGS-ITLGYRLNGQKNELYFFVKDTGIGIPADKAEKVFERFVKLNSF----VKGTG 489

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
           LGL + + +++   G   + +   +G       P+ +
Sbjct: 490 LGLAICRVIIERLGGTIGVDTAVEEGACFWFRLPVQE 526


>gi|212527500|ref|XP_002143907.1| sensor histidine kinase/response regulator, putative [Penicillium
            marneffei ATCC 18224]
 gi|210073305|gb|EEA27392.1| sensor histidine kinase/response regulator, putative [Penicillium
            marneffei ATCC 18224]
          Length = 1888

 Score =  290 bits (741), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 98/606 (16%), Positives = 207/606 (34%), Gaps = 79/606 (13%)

Query: 272  QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI 331
            + +  T +      +    ++   S       +              E++    ++  P+
Sbjct: 838  RRESSTTDQIYDNGRPTPASVTTRSLSRNTSTTSVITHLQREGISISEHIFQLMLNSVPL 897

Query: 332  PFFVY--SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389
              F+   S G + + N  F    + +  D        +     P   ++ + + +     
Sbjct: 898  HLFLAKASSGEVLWTNSKFDAYRRSQPQDQSIRDPWQN---IHPGEVESISKQWLKAL-Q 953

Query: 390  DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449
              +      R+     +        F      +Q  + +   G   +  +  +++ +   
Sbjct: 954  TGSQFTERVRVKRF-GDDNVYRWFIFRANPLLSQTGQVVSWIGSFLDIHEQHVSELRAAQ 1012

Query: 450  EVM------QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            E        +  ++  +    +        ++S N       G   E+ +   FT ++  
Sbjct: 1013 EREVFATNVKYRALANSIPQIVFEATELRGLISANEQWHLYTGQTTEEAMNYGFTTYIHP 1072

Query: 504  NTPSVM---------------------------------------------NHYLTEILS 518
            +                                                     +     
Sbjct: 1073 DDLEKCGVLSSEITRVRTTNDAASASVSHPDVAPLKLFPNGVTPCLLELVNQGIVNSQQD 1132

Query: 519  LDLRQTLEKITLGSTKEEKLLSLRIIIKKLP------FSSCYSLTMHDISEWKQEKNKLS 572
             + R          TK        + + K+         + +  T  DI++ K  + +L+
Sbjct: 1133 ENGRIFYTTELRIRTKGGGYRWHLVRLVKVEASNFGDGEASWYGTCTDINDRKLLERELN 1192

Query: 573  HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
             A +   +E   K+ F + +SHEIRTPL  I+G    I +       +       + I  
Sbjct: 1193 KAMQKLNREMESKTKFFSNMSHEIRTPLNGILGTIPFILDTAL----DNEQRRMMDTIQN 1248

Query: 633  SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
            S   + ++V+++LD+S++E+GKMN+      L   + + I  V   A +K I I      
Sbjct: 1249 SSTNLRELVDNILDVSRVEAGKMNMVKSWFHLRSVLEDVIDTVASRAIDKGIEINYLMDT 1308

Query: 693  NIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV---------ILRVR 742
            ++P  I+ D   ++Q+ +N++ NA+ FT  G +I    +   + EV            V 
Sbjct: 1309 DVPDMIIGDRFRIRQVLINLMGNAVKFTGHG-EIYTRCSVYHDPEVPLKDTELLLNFEVV 1367

Query: 743  DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
            DTG G ++ + E+ M+ F Q+  +   +  G+GLGL L+K +V+ + GK    S   +G 
Sbjct: 1368 DTGKGFSDTDAERLMQRFSQLGGNGSQQNAGSGLGLFLSKQLVEMHGGKLTPSSREGQGA 1427

Query: 803  LIEIIF 808
                  
Sbjct: 1428 KFSFYI 1433


>gi|91714551|gb|ABE54477.1| Hpt sensor hybrid histidine kinase [Shewanella denitrificans OS217]
          Length = 972

 Score =  290 bits (741), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 90/245 (36%), Positives = 135/245 (55%), Gaps = 8/245 (3%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  AKK A++ S  KS+FLA +SHE+RTPL  +IGF+  +         +   ++Y   
Sbjct: 328 ELDLAKKRAQEASQIKSEFLANMSHELRTPLNGVIGFARQLIKTPL----HASQLDYIKT 383

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           IDRS   +L I+ND+LD SK+E+GKM L   P SL E V+E I+++   A  K + +   
Sbjct: 384 IDRSATNLLGIINDILDFSKLEAGKMELEKMPFSLRETVAETITIIAPSAQAKGLELVID 443

Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI-IISTTHTSNEEVILR--VRDTG 745
              N+P  +  D   V QI  N++ NAI FT SG  +  +     +++ V LR  V DTG
Sbjct: 444 IDENVPEHVSGDAMRVNQIITNLVGNAIKFTDSGSVVFKVILVAETDDRVTLRCEVIDTG 503

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+ + + E   + FGQ  +S   R  GTGLGL + K +++   G+    S+  KG+   
Sbjct: 504 IGIDDSQQEYLFQAFGQADSSISRRFGGTGLGLVITKRLINKMGGQIGFTSSSEKGSNFW 563

Query: 806 IIFPL 810
            I PL
Sbjct: 564 FILPL 568


>gi|27380919|ref|NP_772448.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
           USDA 110]
 gi|27354085|dbj|BAC51073.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
           USDA 110]
          Length = 861

 Score =  290 bits (741), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 120/682 (17%), Positives = 229/682 (33%), Gaps = 48/682 (7%)

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFR-GFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK- 211
           G     P  L  L + +    F+ F    GI+       D   +G+  D  F  L     
Sbjct: 47  GRAQAQPYILGILAVLAMVGLFNLFAFAAGIIRFADRSLDDPVVGRIADHGFDGLAVTDP 106

Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKV-SSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270
           +GH       Y   +  + P  +R   +V     +       +LK  +      EE  + 
Sbjct: 107 RGHVVYSNAAYLTLTGATSPQDVRPVERVFIGNPDVSEAVFRLLKAAREGKRQQEEVRIS 166

Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330
             +      L    +    G  +            R+       F E ++   E +D  P
Sbjct: 167 GHDGSQGRWLRMRVRPLGTGKREAKYAVWSIADITRDRERQEDVFQELQHAI-EYLDHAP 225

Query: 331 IPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389
             FF V   G L Y N +      Y   +      G   L  A  +S + A     +   
Sbjct: 226 CGFFSVNPAGELAYVNATLANWLDYDLAEI-----GSGGLKLADIVSGDGASLLSSIVAV 280

Query: 390 DRTCIAASARLHTIQWNRENS-LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
                     +       +   + +       A+  P       I     +     R  E
Sbjct: 281 PGEVKTEVFDIDLRMRTGKTMPVRLYHKLAFGADGAPGPSRTLVISRARDERSDPDRAAE 340

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
           +  M+     + T   IA ++R G ++  N   +KL      D   K     +      +
Sbjct: 341 VRFMRF---FDHTPMAIATVDRGGNVVRANARYAKLAQGLGLDSASKSIFRAINSRDRHL 397

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDI--SEWKQ 566
           +   + +                   +E+     +       +   +  +H +  +E + 
Sbjct: 398 VITAINQAAE-GKADIAPVEVALEGTKERWGQFFVTPVDAAENDAEAAIVHMLETTERRA 456

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
            +N+++ ++K+              ++H+    L+AI+  ++ + N       +P + + 
Sbjct: 457 LENQINQSQKMETV-----GQLAGGIAHDFNNVLSAIMMANDFLLNAH--KPTDPSFQDI 509

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
              I ++      +V  LL  S+    +  L  + + L +A+S+   L++    EK + +
Sbjct: 510 MQ-IKQNATRAATLVRQLLAFSR----RQTLRPQVLDLGDALSDLTMLLRRLIGEK-VKL 563

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT--------------HT 732
                 ++  +  D+   +Q+ +N+  NA    P GG++II T                 
Sbjct: 564 DLIHGRDLWPVKVDVSQFEQVIVNLAVNARDAMPDGGKLIIRTANVATEDAGKLAYKGMP 623

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
           + + V + V DTG G+     +K  +PF     S +  G+GTGLGL     +V    G  
Sbjct: 624 AADYVRIEVADTGTGIPADIRDKIFEPFF----STKEVGKGTGLGLSTVYGIVKQTGGFI 679

Query: 793 YIFSTPAKGTLIEIIFPLYDTS 814
           Y+ S P +GT   I  P +   
Sbjct: 680 YVDSEPGQGTSFHIFLPRHHAE 701



 Score = 38.1 bits (87), Expect = 6.0,   Method: Composition-based stats.
 Identities = 39/404 (9%), Positives = 108/404 (26%), Gaps = 26/404 (6%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK 146
           ++++  G L  ++  L   +     + IG     ++DI+  D  + +  ++        +
Sbjct: 229 FSVNPAGELAYVNATLANWLDYDLAE-IGSGGLKLADIVSGDGASLLSSIVAVPGEVKTE 287

Query: 147 TTLWPIEGTNLYV-PIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
                +        P+ L     +  +      R   I       +DP    +  + +F 
Sbjct: 288 VFDIDLRMRTGKTMPVRLYHKLAFGADGAPGPSRTLVISRARDERSDPD---RAAEVRFM 344

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
              +      +      ++    +    L     + S ++      +           ++
Sbjct: 345 RFFDHTPMAIATVDRGGNVVRANARYAKLAQGLGLDSASKSIFRAINSRDRHLVITAINQ 404

Query: 266 ESSLPEQEDFHTINLN---QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
            +          + L    +   + +   +     ++   + H    +     +   N +
Sbjct: 405 AAEGKADIAPVEVALEGTKERWGQFFVTPVDAAENDAEAAIVHMLETTERRALENQINQS 464

Query: 323 P--ETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
              ETV +                N     +        +                  NA
Sbjct: 465 QKMETVGQLAGGIAHD-------FNNVLSAIMMANDF-LLNAHKPTDPSFQDIMQIKQNA 516

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
            +   L R      +    L     +  ++L+       +     +         +    
Sbjct: 517 TRAATLVRQL-LAFSRRQTLRPQVLDLGDALS-DLTMLLRRLIGEKVKLDLIHGRDLWPV 574

Query: 441 RINKRKMEIEVMQLC-SILEATSDGIAIINREGIILSTNRAVSK 483
           +++  + E  ++ L  +  +A  DG      + II + N A   
Sbjct: 575 KVDVSQFEQVIVNLAVNARDAMPDG-----GKLIIRTANVATED 613


>gi|17229871|ref|NP_486419.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17131471|dbj|BAB74078.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 1344

 Score =  290 bits (741), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 97/702 (13%), Positives = 218/702 (31%), Gaps = 71/702 (10%)

Query: 137  LKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRAL 196
            ++ +  W   T  W   G       ++   PI          R  G+           A 
Sbjct: 543  IEFRVVWLDGTVHW-ASGKGNVFYDEV-GKPI----------RMIGVHQDITERKQAEAK 590

Query: 197  GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL-----RMKNKVSSLTEYYAHKD 251
             ++ +++           +     + +          L        +             
Sbjct: 591  LQKSEQRLKLALWAGNTGTWDWNLQTNEVIWSDHLFSLFGLTPDTFDVSYENFLNLIVHP 650

Query: 252  DVLKTEKYPLLTSEESSLPEQEDFHTI--NLNQYTKKQYFGTLQNNSKESF-----EYLS 304
            +  +      L + E  +P   +F  +  +            L ++            + 
Sbjct: 651  EDREFLHQSALRAIEQQVPHDIEFRFLYPDGTVGWSLCKGQVLYDDITGEPLQMIGVNMD 710

Query: 305  HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIA 363
                 +      E        +D CP   +V    G     N  F  +T           
Sbjct: 711  ITERKNAEEAVRESNQRLQAIIDNCPAVIYVKDMQGRHILVNSEFERITHLTREQV--KN 768

Query: 364  GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
                 +         +     +L                IQ+       +T   F   + 
Sbjct: 769  KTNVKVFSPKTAQSLSVNDQEVLSSRTPVQFEEE-----IQFEDGLHTYLTVK-FPLCDA 822

Query: 424  FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
              E     G+  +  + +  + ++  +     +++   +D I + +    IL  +R    
Sbjct: 823  TGEPYAICGVSTDITERKQAQEQIRQQ----AALINVATDAIFVRDLANRILFWSRGAEN 878

Query: 484  LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
            L+G+  E+ + K       + + S +   +T  L        E        +E +++ R 
Sbjct: 879  LYGWTAEETVGKLAHELFHKESSSQLEAAVTTTLEQGSWHG-ELEQTTKNAQEIIVASRW 937

Query: 544  IIK--KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
             +   +   S    +   +I+E KQ + +    +++            + ++H++     
Sbjct: 938  TLVHNQFGDSPSILVVNTNITEKKQLELQFYRVQRL-----ESIGTLASGIAHDLNNVFA 992

Query: 602  AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
             I+  ++++ ++      + R  E    ++ S     D+V  +L  ++   G+       
Sbjct: 993  PIVMIAQLLPSRCKNV--DIRTQELFKTLETSSKRGSDLVKQILTFARGTEGQRIF---- 1046

Query: 662  VSLDEAVSEAISLVQLYANEKRILIRTSFANN-IPRILADLRSVKQIALNILSNAIHFTP 720
            +     + E   ++Q     K I I T    N +  + AD   ++Q+ +N+  NA    P
Sbjct: 1047 LQPGHLLKELAKVIQQTFP-KSIEIITDIPTNTLWMVQADPTQLEQVFMNLAVNARDAMP 1105

Query: 721  SGGQIIIS--------------TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
            +GG++ I+                    + +++ + DTG G+    LE+   PF      
Sbjct: 1106 NGGKLTITATNRVIDSTYARMHLESEVGDYIVVTISDTGTGIPPEILERIFDPFFTTK-- 1163

Query: 767  QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
                G+GTGLGL     +V  + G   + S   +GT  ++  
Sbjct: 1164 --EVGKGTGLGLSTVLGIVKNHGGFVEVASQVGQGTEFQVFL 1203



 Score =  137 bits (345), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 44/520 (8%), Positives = 137/520 (26%), Gaps = 35/520 (6%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI-LHIDPNNHIGDLLKRQNTWYGKTT 148
           D  G   +++    +  G    +++   + D +    +           + Q    G+  
Sbjct: 366 DDEGCYVDVNAAACELFGVSREELLASTIADFAAPEFNFTQA---WQQFREQEQMSGEFQ 422

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           L    GT      + AA+  +  +R  S      I+         +A  +  +++     
Sbjct: 423 LHRPNGTVRAT--EFAAVANFIPHRHLS------IIRDVSDRQQAKANLQNSEQRLQLAL 474

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKN------KVSSLTEYYAHKDDVLKTEKYPLL 262
                       + +          L   +      +  S   +   +D     +     
Sbjct: 475 SASSTGMWDWNLQTNEVVWSESMCSLFNIDPQTFNNRFESFVNFIHPEDREFVEQHLMQS 534

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
             + +    +     ++   +          +   +    +      +     +     +
Sbjct: 535 IDQNTICNIEFRVVWLDGTVHWASGKGNVFYDEVGKPIRMIGVHQDITERKQAEAKLQKS 594

Query: 323 PETVDKCPIPFFVYSHGNL--------FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
            +   +  +  +  + G             +     L                 L+  P+
Sbjct: 595 EQ---RLKLALWAGNTGTWDWNLQTNEVIWSDHLFSLFGLTPDTFDVSYENFLNLIVHPE 651

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
             +      +   R+    +        +  +     ++        +   E +   G+ 
Sbjct: 652 DREFLHQSAL---RAIEQQVPHDIEFRFLYPDGTVGWSLCKGQVLYDDITGEPLQMIGVN 708

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
            +  + +  +  +     +L +I++     I + + +G  +  N    ++     E +  
Sbjct: 709 MDITERKNAEEAVRESNQRLQAIIDNCPAVIYVKDMQGRHILVNSEFERITHLTREQVKN 768

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-C 553
           K         T   ++    E+LS       E+           L+++  +         
Sbjct: 769 KTNVKVFSPKTAQSLSVNDQEVLSSRTPVQFEEEIQFEDGLHTYLTVKFPLCDATGEPYA 828

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
                 DI+E KQ + ++     +    +     F+  ++
Sbjct: 829 ICGVSTDITERKQAQEQIRQQAALINVATDAI--FVRDLA 866



 Score = 89.3 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 23/171 (13%), Positives = 57/171 (33%), Gaps = 5/171 (2%)

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
              E++ +  +   +  +     +      ++     QL ++ +   D I I + EG  +
Sbjct: 313 HQVEESLRQVQQELELRVAERTAELVQANARLRRREQQLQALFDQALDAILIADDEGCYV 372

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
             N A  +LFG   E++L      F          ++         ++ +          
Sbjct: 373 DVNAAACELFGVSREELLASTIADFAAPE-----FNFTQAWQQFREQEQMSGEFQLHRPN 427

Query: 536 EKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
             + +             +   + D+S+ +Q K  L ++++  +   S  S
Sbjct: 428 GTVRATEFAAVANFIPHRHLSIIRDVSDRQQAKANLQNSEQRLQLALSASS 478


>gi|239625178|ref|ZP_04668209.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239519408|gb|EEQ59274.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 1110

 Score =  290 bits (741), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 117/765 (15%), Positives = 242/765 (31%), Gaps = 60/765 (7%)

Query: 95  LKEISEELPKTIGNYAFKMI----GMRLCDVSDILHIDPNNHIGDLLKRQN-TWYGKTTL 149
              +S E     G    + +    G  + +V                K    T+  +  +
Sbjct: 199 YAFVSREAAALFGYTVDEFMEVTGGTAVGNVYPPDLPGALADCEAAFKDGGLTYSTRYRV 258

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
              +G+     I  +          +     +  +  +  +         L         
Sbjct: 259 RCKDGSLK--WIIDSGKKARDAEGRWMVNSLYLDITQSEANAQRLREQTELLASIYDTVP 316

Query: 210 -IKKGHSSVEKEKYDIFSQQSPP----PHLRMKNKVSS-----LTEYYAHKDDVLKTEKY 259
                        Y + S          +  M+  ++      L        ++L++   
Sbjct: 317 CGIIRFVRGRDGGYRLISTNRTAIRLLGYGTMEEGLADWHDGVLGNVLPQDQEMLRSCYM 376

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKK----QYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
            L    +     +      + + +  +        T Q +       +      +L    
Sbjct: 377 ELRQPGDRQ-DREYRARWKDGSVHWLEGTNMVVSATPQGDHIIQRTIVDITQRKALQIQL 435

Query: 316 DEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
           +  + +   +++      F Y      + +            +  + +  L  L      
Sbjct: 436 EREQEMYRVSMEASAAVMFEYLMDEDVFISYEPRPGMGVCRHELHDYSNIL--LEQKIIH 493

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
            D+  I    + +               +        +      +  +    +       
Sbjct: 494 PDDIPIVIDNICKGRAETFEVRCSTPAGRPGDYVWYRVNSRLIMEDGKPGRVVGALYNIH 553

Query: 436 EDVDTRINKRK-MEIEVMQLCSI---------LEATSD---GIAIINREGIILSTNRAVS 482
           E         + + +    L +I         +    D    + + +  G   + +RA  
Sbjct: 554 EMKSLLFENSEHLYMNQSALQAINGVYVSMFYVNLIQDSYYAVRLPDA-GRKRTLSRAGR 612

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
                    + +          +    +  L EI   +     E    G         L 
Sbjct: 613 FSESLNQYILEQTDEADRERVKSMCARDWLLREINQENEHMEAEFRLAGPEDGASWYRLE 672

Query: 543 IIIKKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKIA-----------EKESSHKSDFL 589
           I +  +  +      + + +IS  KQ++ +    +K A            + +  KS+FL
Sbjct: 673 IHLVAMEQNRPKTIIIAIRNISSEKQKELEHREEEKKAKQALEEAYAAVNRANQAKSEFL 732

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
           +R+SH+IRTP+ AI+G + V ++         +  +  + I  SG+ +L+++N +LD+SK
Sbjct: 733 SRMSHDIRTPMNAILGMAAVAEHNLDKG---DKVKDCLSKIHTSGDHLLELINAVLDMSK 789

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN-NIPRILADLRSVKQIA 708
           IESG + L   P SL   + E   ++Q     K   +           +  D+  VK+I 
Sbjct: 790 IESGSICLAENPFSLSCMMDEVAQIIQTDIGRKGQHLSVHMQGLGHDAVYGDMVRVKEIL 849

Query: 709 LNILSNAIHFTPSGGQIIIST-----THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
           LN+LSNA+ +TP  G I +S      + +        V D G+GM+    EK   PF + 
Sbjct: 850 LNLLSNAVKYTPENGTIQVSLEEKLSSQSGVGCFEFIVEDDGIGMSPEFQEKMFTPFERA 909

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            + +  + +GTGLGLP+ + +V    G   + S   KGT   +  
Sbjct: 910 EDERVSQIQGTGLGLPITRNLVQMMNGTIGVESHLNKGTRFVVTI 954



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 41/430 (9%), Positives = 118/430 (27%), Gaps = 28/430 (6%)

Query: 177 GFRGFGIV--HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL 234
           G + F  V   +  ++ + R   ++++   S +    K  +  +   Y   S+++     
Sbjct: 152 GRQSFDYVEERMRILEEEMRQKNRQMEVIMSSIAGGLKISNDDDTYSYAFVSREAAALFG 211

Query: 235 RMKNKVSSLTE------YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288
              ++   +T        Y         +          +   +      + +       
Sbjct: 212 YTVDEFMEVTGGTAVGNVYPPDLPGALADCEAAFKDGGLTYSTRYRVRCKDGSLKWIIDS 271

Query: 289 FGTLQNNSKESFE---YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN----- 340
               ++          YL      + +    E   L     D  P     +  G      
Sbjct: 272 GKKARDAEGRWMVNSLYLDITQSEANAQRLREQTELLASIYDTVPCGIIRFVRGRDGGYR 331

Query: 341 LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400
           L   N + + L  Y ++++  +A     +L      D   ++   +            R 
Sbjct: 332 LISTNRTAIRLLGYGTMEE-GLADWHDGVLGNVLPQDQEMLRSCYMELRQPGDR--QDRE 388

Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
           +  +W   +   +       +     +        +    +  + ++E E       +EA
Sbjct: 389 YRARWKDGSVHWLEGTNMVVSATPQGDHIIQRTIVDITQRKALQIQLEREQEMYRVSMEA 448

Query: 461 TSDGIA--IINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLTEIL 517
           ++  +   +++ +  I    R      G    ++       +  +   P  +   +  I 
Sbjct: 449 SAAVMFEYLMDEDVFISYEPRPG---MGVCRHELHDYSNILLEQKIIHPDDIPIVIDNIC 505

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRII---IKKLPFSSCYSLTMHDISEWKQEKNKLSHA 574
                    + +  + +    +  R+    I +          +++I E K    + S  
Sbjct: 506 KGRAETFEVRCSTPAGRPGDYVWYRVNSRLIMEDGKPGRVVGALYNIHEMKSLLFENSEH 565

Query: 575 KKIAEKESSH 584
             + +     
Sbjct: 566 LYMNQSALQA 575



 Score = 41.6 bits (96), Expect = 0.53,   Method: Composition-based stats.
 Identities = 45/416 (10%), Positives = 107/416 (25%), Gaps = 47/416 (11%)

Query: 83  VRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCD--VSDILHIDPNNHI---GDLL 137
           +RF    D    L   +    + +G    +       D  + ++L  D         +L 
Sbjct: 320 IRFVRGRDGGYRLISTNRTAIRLLGYGTMEEGLADWHDGVLGNVLPQDQEMLRSCYMELR 379

Query: 138 KRQNTWYGKTTLWPIEGTNLYVPID---LAALPIYSRNREFSGFRGFGIVHVNRVDNDPR 194
           +  +    +      +G+  ++      ++A P               IV + +      
Sbjct: 380 QPGDRQDREYRARWKDGSVHWLEGTNMVVSATPQGD------HIIQRTIVDITQRKALQI 433

Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV-----SSLTEYYAH 249
            L +  +     +            ++    S +  P     ++++       L +   H
Sbjct: 434 QLEREQEMYRVSMEASAAVMFEYLMDEDVFISYEPRPGMGVCRHELHDYSNILLEQKIIH 493

Query: 250 KDDV---------LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF 300
            DD+          + E + +  S  +  P    ++ +N     +    G +        
Sbjct: 494 PDDIPIVIDNICKGRAETFEVRCSTPAGRPGDYVWYRVNSRLIMEDGKPGRVVGALYNIH 553

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDI 360
           E  S     S   Y ++        V             NL   +   + L        +
Sbjct: 554 EMKSLLFENSEHLYMNQSALQAINGVYVSMFYV------NLIQDSYYAVRLPDAGRKRTL 607

Query: 361 EIAGGLSTLLDAPKLSDNNA----------IKPVMLYRSDRTCIAASARLH-TIQWNREN 409
             AG  S  L+   L   +            +  +L   ++      A        +  +
Sbjct: 608 SRAGRFSESLNQYILEQTDEADRERVKSMCARDWLLREINQENEHMEAEFRLAGPEDGAS 667

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465
              +           P+ +            +  + +   E  +    LE     +
Sbjct: 668 WYRLEIHLVAMEQNRPKTI--IIAIRNISSEKQKELEHREEEKKAKQALEEAYAAV 721


>gi|148657711|ref|YP_001277916.1| integral membrane sensor signal transduction histidine kinase
           [Roseiflexus sp. RS-1]
 gi|148569821|gb|ABQ91966.1| integral membrane sensor signal transduction histidine kinase
           [Roseiflexus sp. RS-1]
          Length = 577

 Score =  290 bits (741), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 96/514 (18%), Positives = 187/514 (36%), Gaps = 32/514 (6%)

Query: 321 LTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA--PKLSDN 378
           L+ + V+        Y    + Y   +     +    + +++   +  +          +
Sbjct: 47  LSIDLVNAMNDIILNYRTRQMEYILNAAPADKQRIEKELLDLEQRMDDMFRRYNASYQPD 106

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
              + V                        NS      P      F    P  G    ++
Sbjct: 107 QTERAVFEQVQKDWERYVHLTHTQFIPANRNSNTGNVHP-----SFGRLSPLYGSLQTNI 161

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF-----GYPVEDIL 493
                + +   E  ++   +E               +  +     L      G  +   +
Sbjct: 162 QKVREQSQARAEAARVS--VETAY-------ATSRFVIVSETFLTLVVSAVIGLTLSGNI 212

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL----EKITLGSTKEEKLLSLRIIIKKLP 549
            +      +             +      + +        + ++  ++ + L     +L 
Sbjct: 213 ARRIRTLRDATVAVAQGDLDQRVALRGSDELVLLANNFNLMVASLRQQRVLLEERNAELS 272

Query: 550 FS-SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
            S       M D+ + KQ +     A+  AE  S  KS FLA +SHE+RTPL AI+G+ +
Sbjct: 273 ASLEAQRKLMDDLVQRKQAEEAAHRAQAAAEAASHAKSMFLATMSHELRTPLNAILGYVQ 332

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
           ++  +      +    +    I  +G  +L I++++LD SKIE GKMN+   P S+D   
Sbjct: 333 LLHLEAHMRGRSEMLPD-LERIRSAGKHLLTIISNILDFSKIEQGKMNVEINPFSVDTVA 391

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
            E I ++   A  ++  +      +   + +D   V+QI  N+LSNA+ FT  G  + ++
Sbjct: 392 REVIGIIDPLARNRKNTLNLVCPPDAGMMQSDAGKVRQILFNLLSNAVKFTEEG-TVTLT 450

Query: 729 TTHT---SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
                    + V   V DTG+G+   ++    +PF Q+  ++     GTGLGL L++ + 
Sbjct: 451 VERERHPDGDWVQFSVADTGIGIAPEQMAHLFQPFYQVHQNRSRNYGGTGLGLALSRQLC 510

Query: 786 DANMGKFYIFSTPAKGTLIEIIFPL-YDTSHPHD 818
               G   + S   +G++  +  P   D +H  D
Sbjct: 511 RLLGGDIRVTSEVGRGSVFTVRLPACIDAAHTAD 544


>gi|83591667|ref|YP_425419.1| periplasmic sensor Signal transduction histidine kinase
           [Rhodospirillum rubrum ATCC 11170]
 gi|83574581|gb|ABC21132.1| Periplasmic Sensor Signal Transduction Histidine Kinase
           [Rhodospirillum rubrum ATCC 11170]
          Length = 620

 Score =  290 bits (741), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 95/257 (36%), Positives = 148/257 (57%), Gaps = 1/257 (0%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I      +  L  A++ +E+ +  K+ FLA +SHE+RTPL AIIGFS+++ N   G L +
Sbjct: 357 IVALSNREAALVAARRSSEEANRAKTLFLANMSHELRTPLNAIIGFSDMLANGIHGALAD 416

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
            R  +YA  I+ S   +LD++ND+LD++KIESG   LH  P +L   +  A  ++     
Sbjct: 417 -RQQDYARDINLSALHLLDLINDILDVAKIESGGYLLHERPCNLAAIIRAAERMLGPRVR 475

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
           EK +++ T   +    ++AD R+++Q+ LN+LSNA+ FTP GG+I +S        ++L 
Sbjct: 476 EKGLVMDTVCVDGEAWVMADERAMQQVLLNLLSNAVKFTPEGGRITVSLGLNEGGGMVLV 535

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V DTG G+    L   ++PF Q+   +    EGTGLGLPLAKA+V+ + G   + S P +
Sbjct: 536 VGDTGPGIPAEHLALVLEPFYQVGEVETRSHEGTGLGLPLAKALVEKHEGALRLDSQPGQ 595

Query: 801 GTLIEIIFPLYDTSHPH 817
           GT + +  P      P 
Sbjct: 596 GTRVSVTLPAARVLPPQ 612


>gi|294506830|ref|YP_003570888.1| Two component system histidine kinase, [Salinibacter ruber M8]
 gi|294343158|emb|CBH23936.1| Two component system histidine kinase, putative [Salinibacter ruber
            M8]
          Length = 1052

 Score =  290 bits (741), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 117/771 (15%), Positives = 236/771 (30%), Gaps = 79/771 (10%)

Query: 92   HGYLKEISEELPKTIGNYAFKMI-GMRLCDV-SDILHIDPNNHIGDLLKRQNTWYGKTTL 149
             G    + E      G  + +++ G     + +D         +   L+ +  W G+ T 
Sbjct: 305  DGRYVYVDETHADMYGFESAEVLLGASWRRLYADDEVARLEEEVFPTLEEEGHWQGEVTG 364

Query: 150  WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
               +GT     + L            S  R    V             +          +
Sbjct: 365  SRPDGTTFPAALSLTV---------VSEGRLVCTVRDMTDRRQKERALRHRSSAMEAASD 415

Query: 210  IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES-S 268
                       +Y   +  S   +      V         + +  + E   +    E+  
Sbjct: 416  GIAILGKEGTYRYVNQAHASIYGYDAPGALVGRSWTACYEEAEQQRLEAEAMAALVETGD 475

Query: 269  LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
               +      + + + ++     L++ S                      +    + ++K
Sbjct: 476  WRGEARGVREDGSSFPQELALTVLKDESIVCVVRD-ITARKEDERELRSTKQYYEQILEK 534

Query: 329  CPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
                  V+   G   + N   +   + +  + I     L          +    +   + 
Sbjct: 535  AVKDLAVFKPDGRYEFVNKQSVADPEMR--EWIIGHTNLEYCRKRDLDLELGRRRDRAIR 592

Query: 388  RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
             +                +       T  P    +   E         +  + +  ++ +
Sbjct: 593  TAADEQRTTQYEERMETPDGIRHFLRTHKPIT--DVEGEVTHVAAFGIDITERKKREQAL 650

Query: 448  EIEVMQLCSILEATSDGIAIINREG------IILSTNRAVSKLFGYPVE---DILRKPFT 498
                 ++ ++  AT     ++  EG       I      +  +F YP+     +      
Sbjct: 651  HQRQDKIEALYRATR---RVLTAEGPNEVSDRIHEL---LGSIFDYPLRNTGFVDGGTIH 704

Query: 499  VFL---------EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
                          +        L+          + +   G   + +   LR       
Sbjct: 705  PERTTIAGPSVPSPDPQPKSGDSLSARALQTGDTVIVEDLGGLDNDIEYGRLRSAAAVPI 764

Query: 550  FSSCYSLTMHDISE--------WKQEKNKLSHAKKIAEKESSH----------------- 584
                  +     +E         +  +   S+A  +  +                     
Sbjct: 765  GDRGVVVVGR--TEGGDFEPFNLRLLEILSSYAALVLGRLDREGALREAKEEAETARAEA 822

Query: 585  ------KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
                  KS  LA +SHEIRTPLT+IIGF++ I  +     G    + +AN I +SG  +L
Sbjct: 823  EAASRAKSAMLANMSHEIRTPLTSIIGFADAIGEETQDAEGAA--LRFANLIGKSGRRLL 880

Query: 639  DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
            + ++ +L++SK+E+G+M L    V +          ++  A  K + +R           
Sbjct: 881  NTLDGVLNLSKLEAGQMQLESTAVDVAAQAEVIAKELRPKAEGKGLRLRVDAGEAPVWAE 940

Query: 699  ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
            AD   V+ +  N++SNAI +T +G ++ I   H    + +L + DTG+GM    ++    
Sbjct: 941  ADEGGVQIVLQNLVSNAIKYTDAG-EVRIRVAHEEE-QAVLNIEDTGIGMDPEGVKTLFD 998

Query: 759  PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            PF Q         EGTGLGL + K  VD   G   + +   +G+   + FP
Sbjct: 999  PFRQESEGLAREYEGTGLGLTVTKKAVDQMGGSIDVETEKGEGSHFTVRFP 1049



 Score =  124 bits (312), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 57/532 (10%), Positives = 139/532 (26%), Gaps = 45/532 (8%)

Query: 93  GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL------KRQNTWYGK 146
           G L E++++  + IG    K+ G    D+           +          +    +   
Sbjct: 180 GRLIEVNQKAAELIGAGEEKIAGRHQTDLHPDGEAGRYRRLFQACCRPGAEETVRHFEDG 239

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
           ++++        VP++++A  +    R+ +     GI              + ++     
Sbjct: 240 SSIYVQTDDGENVPVEISAATVEVGGRQIA----VGIFRDITEQ---EKRRRTIESSLRA 292

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPP-HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
           + E   G + +E  +Y    +             +   +    + DD +   +  +  + 
Sbjct: 293 IEEAADGIAVLEDGRYVYVDETHADMYGFESAEVLLGASWRRLYADDEVARLEEEVFPTL 352

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
           E     Q     +  ++     +   L          +      +     +         
Sbjct: 353 EEEGHWQ---GEVTGSRPDGTTFPAALSLTVVSEGRLVCTVRDMTDRRQKERALRHRSSA 409

Query: 326 VDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
           ++       +    G   Y N +   +  Y +   +      +   +  +     A    
Sbjct: 410 MEAASDGIAILGKEGTYRYVNQAHASIYGYDAPGALVGRSWTAC-YEEAEQQRLEAEAMA 468

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
            L                ++ +  +       P E A    ++     +  +    + ++
Sbjct: 469 ALV----ETGDWRGEARGVREDGSSF------PQELALTVLKDESIVCVVRDITARKEDE 518

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF---- 500
           R++         ILE     +A+   +G     N+            I            
Sbjct: 519 RELRSTKQYYEQILEKAVKDLAVFKPDGRYEFVNKQSVADPEMREWIIGHTNLEYCRKRD 578

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM-H 559
           L+       +  +            E+           L     I  +     +      
Sbjct: 579 LDLELGRRRDRAIRTAADEQRTTQYEERMETPDGIRHFLRTHKPITDVEGEVTHVAAFGI 638

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLAR-----VS---HEIRTPLTAI 603
           DI+E K+ +  L   +   E         L       VS   HE+   L +I
Sbjct: 639 DITERKKREQALHQRQDKIEALYRATRRVLTAEGPNEVSDRIHEL---LGSI 687



 Score =  115 bits (287), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 44/404 (10%), Positives = 110/404 (27%), Gaps = 31/404 (7%)

Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEK-EKYDIFSQQ--SPPPHLRMKNKVSSLTE 245
             +        +  K+  L E       +   +   +      +       + K++   +
Sbjct: 146 EQDRREQKTDAIRGKYELLLEAAPDPVILADIDTGRLIEVNQKAAELIGAGEEKIAGRHQ 205

Query: 246 YYAHKDDVLKTEKY-------PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE 298
              H D      +        P          +    +    +                 
Sbjct: 206 TDLHPDGEAGRYRRLFQACCRPGAEETVRHFEDGSSIYVQTDDGENVPVEISAATVEVGG 265

Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVD 358
               +      +           +   +++      V   G   Y + +   +  ++S +
Sbjct: 266 RQIAVGIFRDITEQEKRRRTIESSLRAIEEAADGIAVLEDGRYVYVDETHADMYGFESAE 325

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
            +  A     L    +++         L             +   + +          P 
Sbjct: 326 VLLGASW-RRLYADDEVARLEEEVFPTL----EEEGHWQGEVTGSRPDGTTF------PA 374

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
             +              +  D R  +R +        S +EA SDGIAI+ +EG     N
Sbjct: 375 ALSLTVVSEGRLVCTVRDMTDRRQKERALRHRS----SAMEAASDGIAILGKEGTYRYVN 430

Query: 479 RAVSKLFGYP-VEDILRKPFTVFLEQ-NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
           +A + ++GY     ++ + +T   E+     +    +  ++             G  ++ 
Sbjct: 431 QAHASIYGYDAPGALVGRSWTACYEEAEQQRLEAEAMAALVETG---DWRGEARGVREDG 487

Query: 537 KLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
                 + +  L   S     + DI+  K+++ +L   K+  E+
Sbjct: 488 SSFPQELALTVLKDES-IVCVVRDITARKEDERELRSTKQYYEQ 530



 Score = 91.6 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 35/305 (11%), Positives = 84/305 (27%), Gaps = 13/305 (4%)

Query: 281 NQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS--H 338
              +     G        +                D         ++  P P  +     
Sbjct: 120 EPRSAPLGPGEEAALELLAQSIGRVLEQDRREQKTDAIRGKYELLLEAAPDPVILADIDT 179

Query: 339 GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398
           G L   N     L      + I        L    +      +            +    
Sbjct: 180 GRLIEVNQKAAELIG-AGEEKIAGRHQTD-LHPDGEAGRYRRLFQACCRPGAEETVRHFE 237

Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458
              +I    ++   +         +        GI  +  +    +R +E     L +I 
Sbjct: 238 DGSSIYVQTDDGENVPVEISAATVEVGGRQIAVGIFRDITEQEKRRRTIESS---LRAI- 293

Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYPVED-ILRKPFTVFLEQNTPSVMNHYLTEIL 517
           E  +DGIA++  +G  +  +   + ++G+   + +L   +      +  + +   +   L
Sbjct: 294 EEAADGIAVL-EDGRYVYVDETHADMYGFESAEVLLGASWRRLYADDEVARLEEEVFPTL 352

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI 577
             +     +    GS  +       + +  +        T+ D+++ +Q++  L H    
Sbjct: 353 EEEGHW--QGEVTGSRPDGTTFPAALSLTVV-SEGRLVCTVRDMTDRRQKERALRHRSSA 409

Query: 578 AEKES 582
            E  S
Sbjct: 410 MEAAS 414



 Score = 83.5 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/297 (11%), Positives = 77/297 (25%), Gaps = 16/297 (5%)

Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDD 359
                      + A    G +     V          S      A  +   L +  +  D
Sbjct: 1   MSTDGLSARQRVRALLQTGVDRFGVEVGFLAQIDLAESTHRTVAAVGAHPKL-QRGAEAD 59

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
           +        +  +  LS  NA +              S  L T                 
Sbjct: 60  LPDTYCRELVTQSEALSIENAEEQGWTTDPAYQTYDLSCYLGTKIIVEGRVYGTVCFGSR 119

Query: 420 KANQFPENMPQNGIEP-------EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE- 471
           +    P    +              ++    ++K +    +   +LEA  D + + + + 
Sbjct: 120 EPRSAPLGPGEEAALELLAQSIGRVLEQDRREQKTDAIRGKYELLLEAAPDPVILADIDT 179

Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK---- 527
           G ++  N+  ++L G   E I  +  T                        +T+      
Sbjct: 180 GRLIEVNQKAAELIGAGEEKIAGRHQTDLHPDGEAGRYRRLFQACCRPGAEETVRHFEDG 239

Query: 528 -ITLGSTKEEKLLSLRIIIKKLPFSSCYSLT--MHDISEWKQEKNKLSHAKKIAEKE 581
                 T + + + + I    +             DI+E ++ +  +  + +  E+ 
Sbjct: 240 SSIYVQTDDGENVPVEISAATVEVGGRQIAVGIFRDITEQEKRRRTIESSLRAIEEA 296



 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/253 (7%), Positives = 72/253 (28%), Gaps = 24/253 (9%)

Query: 89  IDAHGYLKEISEELPKTIGNYAF-KMIGMRLC---DVSDILHIDPNNHIGDLLKRQNTWY 144
           +   G  + +++      G  A   ++G       + ++   ++    +  L++  + W 
Sbjct: 420 LGKEGTYRYVNQAHASIYGYDAPGALVGRSWTACYEEAEQQRLEAE-AMAALVETGD-WR 477

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
           G+      +G++   P +LA   +   +          +V       +     +   + +
Sbjct: 478 GEARGVREDGSSF--PQELALTVLKDES-------IVCVVRDITARKEDERELRSTKQYY 528

Query: 205 SHLHEIKKGHSSVEKEKYDI--------FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256
             + E      +V K                +     +   N           +    + 
Sbjct: 529 EQILEKAVKDLAVFKPDGRYEFVNKQSVADPEMREWIIGHTNLEYCRKRDLDLELGRRRD 588

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
                   E+ +   +E   T +  ++  + +   + +   E     +     +     +
Sbjct: 589 RAIRTAADEQRTTQYEERMETPDGIRHFLRTH-KPITDVEGEVTHVAAFGIDITERKKRE 647

Query: 317 EGENLTPETVDKC 329
           +  +   + ++  
Sbjct: 648 QALHQRQDKIEAL 660


>gi|218887625|ref|YP_002436946.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218758579|gb|ACL09478.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 681

 Score =  290 bits (741), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 95/648 (14%), Positives = 215/648 (33%), Gaps = 35/648 (5%)

Query: 169 YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228
                  +   G  +V     +                        + + +    +   +
Sbjct: 38  RDLAEAVAQAAGRKVVFHVDDNGVALRDELA--------GGSLDALALMAETPERLARLE 89

Query: 229 SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288
              P + +  ++    +  AH       +   LL +   S    +   ++   +      
Sbjct: 90  FSEPGVEVAERIYVRRDSGAHP--RGVADLSGLLVAVVESHSSHQYLRSMPGQRLLPVPT 147

Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSF 348
                               P +           P      P+    +S G     N   
Sbjct: 148 PLDAVMAVAWGRADALMAPEPVVEHIIRRLPTDAPLEPSGQPLRTLRFSFGAAK-GNTPL 206

Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
           + +   +++  +  +G    L       +  +              A             
Sbjct: 207 VAVLN-EALVKVRASGEYDRLYRRWFGGNVLSRYTDRELLLAGVAFALLTVFL-----GA 260

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468
           + + ++     + +     +         +   I++++ E E  +  ++   + D +AI+
Sbjct: 261 SVVLLSRTVRLRRDVEAGTVATREARASMLREAISRQRAEQEAERFFAL---SLDPVAIV 317

Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE-K 527
            ++G +   N A  +LFG+  E++   PF  F+  +        L   ++          
Sbjct: 318 TQQGALRRVNPAWVRLFGFLPEEVTGHPFLDFVHPDDMDASRPLLVGGMNGLAGVVATPV 377

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
                 K+     L      LP      L+  D+++ K+ +  L    +   + ++    
Sbjct: 378 ENRFRCKDGVYRWLAWASVVLPEEGLVYLSGRDVTQRKEAELHLERQAEELRRSNAELEQ 437

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           F    SH+++ PL  I  F +++  +  G L +    E+  +   +   + D++ DLL  
Sbjct: 438 FAYIASHDLQEPLRKIASFLDLLAKRYVGRLDSD-ADEFIGFAVDAARRMKDMIEDLLAY 496

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707
           S++ +      FE   +++ V   +S + L   E    +       +P I AD   ++Q+
Sbjct: 497 SRVSTQGR--EFEDTDMEKVVDTVLSDLGLLFEEAGATVER---GPLPMIRADRVQMEQL 551

Query: 708 ALNILSNAIHF-TPSGGQIIISTTHTSNEE-----VILRVRDTGVGMTNYELEKAMKPFG 761
             N+L NA+ + + +   I I     + +       +  VRD G+GM     E+  + F 
Sbjct: 552 LRNLLGNAVKYRSEAPPSISIGAERATGDGHPGKAWVFHVRDNGIGMKPEHFERIFRVFQ 611

Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           ++      R  GTG+GL + K +V+ + G   + S P +G+    + P
Sbjct: 612 RLHGPG--RYPGTGIGLAVCKKIVERHGGTIDVESVPGRGSTFRFVMP 657



 Score = 48.1 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/242 (8%), Positives = 56/242 (23%), Gaps = 10/242 (4%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI----GDLLKRQNTWYGKT 147
            G L+ ++    +  G    ++ G    D      +D +  +     + L        + 
Sbjct: 320 QGALRRVNPAWVRLFGFLPEEVTGHPFLDFVHPDDMDASRPLLVGGMNGLAGVVATPVEN 379

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                +G   ++      LP            G  +      +       + L +  + L
Sbjct: 380 RFRCKDGVYRWLAWASVVLP----EEGLVYLSGRDVTQRKEAELHLERQAEELRRSNAEL 435

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
            +     S   +E     +        R   ++ S  + +             ++    +
Sbjct: 436 EQFAYIASHDLQEPLRKIASFLDLLAKRYVGRLDSDADEFIGFAVDAARRMKDMIEDLLA 495

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
                             ++   T+ ++    FE                      + + 
Sbjct: 496 YSRVSTQGREFEDTDM--EKVVDTVLSDLGLLFEEAGATVERGPLPMIRADRVQMEQLLR 553

Query: 328 KC 329
             
Sbjct: 554 NL 555


>gi|153830878|ref|ZP_01983545.1| sensor histidine kinase/response regulator [Vibrio cholerae 623-39]
 gi|148873647|gb|EDL71782.1| sensor histidine kinase/response regulator [Vibrio cholerae 623-39]
          Length = 714

 Score =  290 bits (741), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 83/306 (27%), Positives = 143/306 (46%), Gaps = 14/306 (4%)

Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAK 575
            +   +        K    +++ +    +           D+ E  ++      +L  AK
Sbjct: 9   RIEGKMHGELDTLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAK 68

Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
           K A++ +  KS+FLA +SHE+RTPL  +IGF+  +   +          +Y   I++S N
Sbjct: 69  KRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTN----SQADYLQTIEKSAN 124

Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695
            +L I+ND+LD SK+E+GK+ L   P    E + E ++L    A+EK + I       IP
Sbjct: 125 NLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGLEITLKIDPKIP 184

Query: 696 R-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT----SNEEVILRVRDTGVGMTN 750
           R ++ D   ++Q+  N++ N+I FT  G  I +S           ++   VRDTG+G++ 
Sbjct: 185 RGVVGDPLRIQQVLTNLVGNSIKFTERG-NIDVSVEMRALRDDVIDLQFMVRDTGIGISE 243

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            +  +  + F Q   S   R  GTGLGL + + +V    G+  + S   +G+       L
Sbjct: 244 RQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSHMGGEISLTSRLHQGSTFWFTLRL 303

Query: 811 YDTSHP 816
           + T  P
Sbjct: 304 HTTELP 309


>gi|150402298|ref|YP_001329592.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus maripaludis C7]
 gi|150033328|gb|ABR65441.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus maripaludis C7]
          Length = 614

 Score =  290 bits (741), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 68/247 (27%), Positives = 136/247 (55%), Gaps = 4/247 (1%)

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            K++ N L H+    ++    KS+ ++ VSHE+RTPLT+I+G+ +++K++  G L N + 
Sbjct: 370 LKKDANDLKHSYDELKEVDDLKSELISIVSHELRTPLTSILGYIQLLKDETAGKL-NEKQ 428

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            E+ + I  +   +  I +++ D+  ++   ++  F  +++  AV E IS +Q +A+ + 
Sbjct: 429 KEFVSVISENSERLKRITDNMSDLVSVDDDVLDGEFNKLNIKNAVEEIISSLQHFADSRN 488

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
           I++     ++   I  D   + Q+  N++ NA+ F+    ++ + T    N  + L + D
Sbjct: 489 IILLEDVDDS--YIKGDKSKIHQVLANLIENAVKFSKKQTKVTV-TGFEDNGNIHLEITD 545

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
            G G+    L+K    F QI +S +    G+GLGL + K +V+++ G  ++ S   KGT+
Sbjct: 546 QGPGIPKEHLDKIFDRFYQIDSSSKREIGGSGLGLAVCKKIVESHGGSIWVESKIGKGTI 605

Query: 804 IEIIFPL 810
           + ++FPL
Sbjct: 606 VHVLFPL 612


>gi|22298910|ref|NP_682157.1| two-component hybrid sensor and regulator [Thermosynechococcus
           elongatus BP-1]
 gi|22295091|dbj|BAC08919.1| two-component hybrid sensor and regulator [Thermosynechococcus
           elongatus BP-1]
          Length = 1060

 Score =  290 bits (741), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 98/473 (20%), Positives = 187/473 (39%), Gaps = 38/473 (8%)

Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
            +                +L +    +   L  +++           +  +    + ++ 
Sbjct: 374 DMAAQLQESFAELHHFNQRLEEKVKQRTAALEAANQQLSEKE---RVLHDHNVALVQLSQ 430

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
            P  +   F   + +                 E++  +L          +   +      
Sbjct: 431 SPHVQQGHFRMALQEIIQVTAITLRVQRASAWELQGDRLK--------CVVQYDP----- 477

Query: 476 STN----RAVSKLFGYPVEDILRKPFTVFLEQN--TPSVMNHYLTEILSLDLRQTLEKIT 529
           + N            YP    L +     +  +  T    +          +   ++   
Sbjct: 478 AANNHTQPTYLTHSPYPEYLKLLRSGEPLVINDLLTDPRTHELREYARVQRVYSRIDTPI 537

Query: 530 LGSTKEEKLLSLRII---IKKLPFSSCYSLTMHDI-------SEWKQEKNKLSHAKKIAE 579
           + + +   ++ +  I      L     +   + DI        +  Q + +L  AK+ AE
Sbjct: 538 IFNGQLLGVICVESIGKQRVWLLEERRFVANVADIVTIALAAHQRHQAERELLKAKEAAE 597

Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639
             +  KS FLA +SHE+RTPL AI+GFS+++ + R      P++ +    I+RSG  +L 
Sbjct: 598 AANKAKSIFLANMSHELRTPLNAILGFSQILLSDRTLA---PQHRQTLEKINRSGEHLLG 654

Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RIL 698
           ++ND+LD++KIE+G+M L      L   + +   ++++ A  K + +    A N+P  + 
Sbjct: 655 LINDVLDMAKIEAGRMILQQTTFDLRRMLRDLEEMLKVRAEAKGLRLVFDLAANLPVAVT 714

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757
            D   ++Q+ +N+L N I FT  G   + +S        +   V DTG+GMT  EL+   
Sbjct: 715 TDEMKLRQVLVNLLGNGIKFTKEGSVCLKVSYRAQEPPRLAFEVSDTGIGMTPQELKMLF 774

Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           +PF Q  +S +   EGTGLGL +++  V    G   + ST  KG+      P+
Sbjct: 775 QPFVQTDSS-KKVSEGTGLGLAISRQFVQLMGGDIQVRSTKGKGSHFYFEVPI 826


>gi|121605100|ref|YP_982429.1| PAS/PAC sensor signal transduction histidine kinase [Polaromonas
           naphthalenivorans CJ2]
 gi|120594069|gb|ABM37508.1| multi-sensor signal transduction histidine kinase [Polaromonas
           naphthalenivorans CJ2]
          Length = 448

 Score =  290 bits (741), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 83/420 (19%), Positives = 163/420 (38%), Gaps = 29/420 (6%)

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459
           L+ ++  + N   +     +           + +     +      + +  + +  S L+
Sbjct: 51  LNWLRSEQSNETPVLMAGAQPRLPGVWGEAADRVRRLLKNRHQQYSESQARLDEFLSALQ 110

Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL 519
           A+ +G+ +++ EG I   N+  ++ FG+  +  +++     +     +          S 
Sbjct: 111 ASPNGVVLLDDEGRIEWCNQMAAQHFGFDAKRDIQQHIANLVRDPAFNAYMATAN--FSQ 168

Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579
           ++       T         + L + +          L+  DI+  +Q +           
Sbjct: 169 EVVIPGNFSTPAR-----PVKLSVHVHCYGKGKKLLLS-RDITALEQAE----------- 211

Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639
              + + DF+A VSHEIRTPLT + GF E ++     PL  P    Y   + +    +  
Sbjct: 212 ---AMRRDFVANVSHEIRTPLTVVSGFIETLQT---FPLKKPERDRYLCLMAQQSQRMQT 265

Query: 640 IVNDLLDISKIESGKMNLHFEPV---SLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696
           +V+DLL +S++E   +    E     SL     +    +      +   +          
Sbjct: 266 LVDDLLTLSRLEGSPLPGAQEWSATKSLFAQCEQEARALSGVIAPQGHQLVFEPGPAC-E 324

Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKA 756
           I    R +     N+++NA+ +TP  G I +S T  ++     RVRD+G G+    L + 
Sbjct: 325 IAGIQREICSALSNLVTNAVRYTPEAGLIRVSWTLLADGRGEFRVRDSGPGIAPEHLPRL 384

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
            + F ++  S+     GTGLGL + K +   +  +  I S   +G+   IIFP      P
Sbjct: 385 TERFYRVDRSRSRETGGTGLGLAIVKHVAQRHGAQLRIESQVGQGSCFSIIFPAARVRQP 444


>gi|291571293|dbj|BAI93565.1| two-component hybrid histidine kinase [Arthrospira platensis NIES-39]
          Length = 1390

 Score =  290 bits (741), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 127/837 (15%), Positives = 265/837 (31%), Gaps = 149/837 (17%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            +D  G +  ++       G  + ++I       +  L +         L   N   G   
Sbjct: 344  VDCQGIVHAVNPAGLNLFGRTSEELI-------NHELGLPITVGDVAQLGILNPERGLVM 396

Query: 149  LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIV--HVNRVDNDPRALGKRLDKKFSH 206
            +        ++                   R F +V           +   +  +++FS 
Sbjct: 397  VEMTVAETEWLQ------------------RPFYVVCFRDITERCKTQEALQESEERFSQ 438

Query: 207  LHEIKKGHSSVEKEKYDIFSQQSPPPHL------RMKNKVSSLTEYYAHKDDVLKTEKYP 260
            +    +    +   + D     SP          +             H DD+       
Sbjct: 439  VVNHIQDVFWLTSPRGDKLFYISPAYEKIWGRSCQAVYDDPGSWLEAVHPDDLQSVIVNF 498

Query: 261  LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE--- 317
                   S   +      + +          ++N   +           +     +E   
Sbjct: 499  SYQEYAQSRFIEYRIFKPDGDMLWICDRAFPIKNERGDVVRVARIAEDITNRKKTEEHLR 558

Query: 318  GENLTPETVDKCPIPF------------------FVYSHGNLFYANPSFLLLTKYKSVDD 359
             +      + +  +                     +     +         L        
Sbjct: 559  QQAEREHLLYQLTLHISQSLNLDDILQNTVNELRHLLDLDRVLILRCHDQNLATVTHESI 618

Query: 360  IEIAGGL------STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ--------- 404
            +     +        L +  + +D      +    ++    +       +Q         
Sbjct: 619  VPGIDTILGCKYQDYLYNHGQQNDQKEPLIIYDNDANLRAFSPQHYSFNLQAKSRISVPI 678

Query: 405  --------------------WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
                                W       +  +  + A    +    + ++ E  D    +
Sbjct: 679  YQGDNLWGLLIVHHVAHLRNWENWEIQLLKQLATQLAIAIYQAELYHQLQVELNDRTQAE 738

Query: 445  RKMEIEVMQ----------------LCSILEATS---------DGIAII-----N----- 469
              +   +++                L  I + T+         D + I      +     
Sbjct: 739  EALRESLVREMAITQLIQQISQTLELDQIFDNTTKDVQQILDCDSVVIHKFKNPDNYYHH 798

Query: 470  ---REGIILST--NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
                +  I+S   N+    +    V+ +      +       S+    +  + SL+++  
Sbjct: 799  LLLPDLRIISAKHNQESPHI-KLVVKHLKSGQVVMADSHQDSSISESQIKLLKSLNIQAY 857

Query: 525  LEKIT---------LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575
            L             L + ++E    L   +K L   +             +   +L  AK
Sbjct: 858  LGVPVYVGETLWGILATYQKESRKWLHHEVKLLTQIARQLGVAI---YQAELFTQLQQAK 914

Query: 576  KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
            + A+  +  KS+FLA +SHE+RTPL AI+GF++ +  Q +G     +  EY   I +SG 
Sbjct: 915  EAADTANRAKSEFLANMSHELRTPLNAILGFTQ-LLGQNYG--LTSQQQEYLQIIQQSGK 971

Query: 636  LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695
             +L ++N++LD+SKIE+G + L+    +L   +    +++Q+ A+ K +++      +IP
Sbjct: 972  YLLSLINEVLDLSKIEAGAVTLNPTNFNLITLLKRINTMLQIKASSKNLVMNIQLQQDIP 1031

Query: 696  R-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN-EEVILRVRDTGVGMTNYEL 753
              +  D   ++Q+ +N+L NAI FT +G  + +  +  S+  ++   V DTG G+T  E 
Sbjct: 1032 DYVQTDESKLRQVLVNLLDNAIKFTDAGS-VTLRVSFVSSVSQLYFEVEDTGPGITPDEQ 1090

Query: 754  EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            E+  KPF Q    +    +GTGLGL +++  V    GK  I S    G       P+
Sbjct: 1091 ERLFKPFVQTDVGR-RHQQGTGLGLAISQQYVSLMGGKITIVSVVDGGAKFMFNIPV 1146



 Score =  101 bits (252), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 48/417 (11%), Positives = 130/417 (31%), Gaps = 39/417 (9%)

Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH 233
               +R F I+ +   D+      ++L +    L    + +S   +     F +      
Sbjct: 51  NVMNYRPFNIL-LVTNDDAYEVQLRQLLQFMRSLSVKLERYSPTLEPFEQTFPEYHLYLI 109

Query: 234 LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293
                 +    +       +   +         +      D+  IN     + +    L 
Sbjct: 110 DYTTYLLRDWIDRVLPTPVIALVDNSE--AGLAALNMGATDYLPINRLILEEIERSLRLS 167

Query: 294 NNSKESFEYLSHRNHPSLSAY-FDEGENLTPETVDKCPIPFFVYSHGNL--FYANPSFLL 350
               ++  + +  + P+       E +      ++  P   ++Y   NL   Y N   + 
Sbjct: 168 LALGQAHNHQTISSDPNHRTPNLYEDKLFIETIINSFPKLIYIYEPKNLQNVYVNNQIIN 227

Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML----YRSDRTCIAASARLHTIQWN 406
           +  +   +D++  G            D+  I   +L      S+   +    R+   +  
Sbjct: 228 ILGFSP-EDLQKLG--DRFFWEQIHPDDLPILETILEQVSALSEGEVLDIEYRM---RHK 281

Query: 407 RENSLAMTFIPFE-KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465
             +   +         +     +   G   +    ++ + +++    +L  I  + SD I
Sbjct: 282 NGSYRWLRAQEVPFTKDANGLAVQVLGTAQDITSHKLIESQLQESEARLQVIFNSISDSI 341

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
            +++ +GI+ + N A   LFG   E+++     + +     + +                
Sbjct: 342 LMVDCQGIVHAVNPAGLNLFGRTSEELINHELGLPITVGDVAQLG--------------- 386

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEK 580
                    E  L+ + + + +  +     Y +   DI+E  + +  L  +++   +
Sbjct: 387 -----ILNPERGLVMVEMTVAETEWLQRPFYVVCFRDITERCKTQEALQESEERFSQ 438



 Score = 96.6 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/392 (10%), Positives = 107/392 (27%), Gaps = 48/392 (12%)

Query: 229 SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKK-Q 287
           SP    ++ ++      +      +    +     SE   L  +      N +    + Q
Sbjct: 232 SPEDLQKLGDRFFWEQIHPDDLPILETILEQVSALSEGEVLDIEYRMRHKNGSYRWLRAQ 291

Query: 288 YFGTLQNNSKESFEYLSHRNHPSL----SAYFDEGENLTPETVDKCPIPFFVYSHGNLFY 343
                ++ +  + + L      +      +   E E       +       +     + +
Sbjct: 292 EVPFTKDANGLAVQVLGTAQDITSHKLIESQLQESEARLQVIFNSISDSILMVDCQGIVH 351

Query: 344 A-NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT 402
           A NP+ L L    S + I    GL      P    + A   + +   +R  +     +  
Sbjct: 352 AVNPAGLNLFGRTSEELINHELGL------PITVGDVA--QLGILNPERGLVMVEMTVAE 403

Query: 403 IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
            +W +     + F                    +  +    +  ++    +   ++    
Sbjct: 404 TEWLQRPFYVVCFR-------------------DITERCKTQEALQESEERFSQVVNHIQ 444

Query: 463 DGIAIINREG-IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
           D   + +  G  +   + A  K++G   + +   P +   E   P  +   +      + 
Sbjct: 445 DVFWLTSPRGDKLFYISPAYEKIWGRSCQAVYDDPGSWL-EAVHPDDLQSVIVNFSYQEY 503

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKI 577
            Q+          +  +L +      +       +       DI+  K+ +  L    + 
Sbjct: 504 AQSRFIEYRIFKPDGDMLWICDRAFPIKNERGDVVRVARIAEDITNRKKTEEHLRQQAER 563

Query: 578 AEKESSH---------KSDFLARVSHEIRTPL 600
                             D L    +E+R  L
Sbjct: 564 EHLLYQLTLHISQSLNLDDILQNTVNELRHLL 595



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/370 (7%), Positives = 92/370 (24%), Gaps = 37/370 (10%)

Query: 96  KEISEELPKTIGNYAFKM--IG-MRLCDVSDILHIDPNNHIGD---LLKRQNTWYGKTTL 149
             ++ ++   +G     +  +G     +      +     I +    L        +  +
Sbjct: 219 VYVNNQIINILGFSPEDLQKLGDRFFWEQIHPDDLPILETILEQVSALSEGEVLDIEYRM 278

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
               G+  Y  +    +P ++++      +  G            +  +  + +   +  
Sbjct: 279 RHKNGS--YRWLRAQEVP-FTKDANGLAVQVLGTAQDITSHKLIESQLQESEARLQVI-- 333

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
                           S       +  +  V ++     +       E          ++
Sbjct: 334 --------------FNSISDSILMVDCQGIVHAVNPAGLNLFGRTSEELINHELGLPITV 379

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS----AYFDEGENLTPET 325
            +      +N  +          +    +   Y+      +          E E    + 
Sbjct: 380 GDVAQLGILNPERGLVMVEMTVAETEWLQRPFYVVCFRDITERCKTQEALQESEERFSQV 439

Query: 326 VDKCPIPFFVY--SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
           V+     F++       LFY +P++  +         +  G            D+     
Sbjct: 440 VNHIQDVFWLTSPRGDKLFYISPAYEKIWGRSCQAVYDDPGS----WLEAVHPDDLQSVI 495

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
           V     +          + I     + L +    F   N+  + +    I  +  + +  
Sbjct: 496 VNFSYQEYAQS--RFIEYRIFKPDGDMLWICDRAFPIKNERGDVVRVARIAEDITNRKKT 553

Query: 444 KRKMEIEVMQ 453
           +  +  +  +
Sbjct: 554 EEHLRQQAER 563


>gi|283851565|ref|ZP_06368845.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           sp. FW1012B]
 gi|283573099|gb|EFC21079.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           sp. FW1012B]
          Length = 783

 Score =  290 bits (741), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 91/541 (16%), Positives = 184/541 (34%), Gaps = 46/541 (8%)

Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGE--NLTPETVDKCPIPFFVYSHG-NLFYANPS 347
              +   E    ++      LS   +         +  +  P    V      L   N  
Sbjct: 271 RQSDEMGELGGAINSMGREVLSKQAELARQMRRYQDLFEHVPCIITVQDKNLRLVSYNQF 330

Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
           F          +     G         L       PV+    D   +  +    T+  + 
Sbjct: 331 FA--------GEFHAKPGEYCYKVYKGLDAPCPNCPVIRTFEDG--LPHATEEITLDKDG 380

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
               +         +          +  +  D++  + ++E    +  +I       + +
Sbjct: 381 CR-RSFFVSTAPMTDAAGNVSTVMEMSLDITDSKFLEEELERSRQKYLAIFSCIPTALFV 439

Query: 468 INRE-GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
           ++RE   IL  N    + +GY   + +   F         +     + E  ++D      
Sbjct: 440 LDRESLAILECNAKAVETYGYSQGEFIGLGFLDLFLNQDRTGHERVIREEHAIDRA---- 495

Query: 527 KITLGSTKEEKLLSLRIIIK--KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
                  K  +++ + I +     P S  Y  ++ DI+   + + +L  A K+A      
Sbjct: 496 ---RHRRKSGEVIYVSIRVSTAAYPGSQVYLASVTDITHRLETEQQLIQASKMAT----- 547

Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKN--QRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
             +    V+HE+  P+T I   ++ +    +R  P+    + E A+ I R  +    I+N
Sbjct: 548 LGEMATSVAHELNQPMTVIQTITDYLLRKTRRDEPVPRELFQEMADGIGRHISRATRIIN 607

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702
            + +  +    K +L   PV L E +S  + L       + I +      ++P +LA+  
Sbjct: 608 HMREFGR----KSDLVTGPVDLGEVLSRTLELFSQQLKVRNIEVACDIRPDLPPVLAEAN 663

Query: 703 SVKQIALNILSNAIH------FTPSGGQIIISTTH-TSNEEVILRVRDTGVGMTNYELEK 755
            ++Q+ +N+L NA         +  G    +S       + V+  + DTG G+     +K
Sbjct: 664 RLEQVFMNLLLNARDAIEERAASQPGAPKRVSLRVFAEEDFVVAEIADTGPGIPTDIQDK 723

Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
             +PF          G+GTGLGL ++  ++    G     + P +G    +  P      
Sbjct: 724 VFEPFFTTKA----VGKGTGLGLSISYGIIKDYGGSIEAVAAPGQGARFLVRLPRQKGDK 779

Query: 816 P 816
           P
Sbjct: 780 P 780



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 16/187 (8%), Positives = 55/187 (29%), Gaps = 15/187 (8%)

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
            R         +   +     ++  +    +   G      +    + ++  ++ +   +
Sbjct: 253 MRATRAIAAGGDFTGVDVRQSDEMGELGGAINSMG-----REVLSKQAELARQMRRYQDL 307

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
            E     I + ++   ++S N+  +  F     +   K +           +     + L
Sbjct: 308 FEHVPCIITVQDKNLRLVSYNQFFAGEFHAKPGEYCYKVYKGLDAPCPNCPVIRTFEDGL 367

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH----DISEWKQEKNKLSH 573
                       +   K+    S  +    +  ++    T+     DI++ K  + +L  
Sbjct: 368 PHAT------EEITLDKDGCRRSFFVSTAPMTDAAGNVSTVMEMSLDITDSKFLEEELER 421

Query: 574 AKKIAEK 580
           +++    
Sbjct: 422 SRQKYLA 428


>gi|149278454|ref|ZP_01884591.1| chemotaxis response regulator (methyltransferase) [Pedobacter sp.
            BAL39]
 gi|149230824|gb|EDM36206.1| chemotaxis response regulator (methyltransferase) [Pedobacter sp.
            BAL39]
          Length = 1616

 Score =  290 bits (741), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 97/652 (14%), Positives = 215/652 (32%), Gaps = 45/652 (6%)

Query: 190  DNDPRALGKRLDKKFSHLHEIKKGHSS----VEKEKYDIFSQQSPPPHLRMKNKV-SSLT 244
                       + +F+ +             V+   +   +  S   + R +        
Sbjct: 975  VRARTQQLSASEDRFNEVARATNDTIWDWSLVDNTMWRSDNMDSMFGYSRSEETSNIGFW 1034

Query: 245  EYYAHKDDVLKTEKYPLLTSE--ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302
                H DD  + +          E    E+  F   N            L ++ +  +  
Sbjct: 1035 FDKIHPDDRKRVKDSVFAAINQNEKQWSEEYRFLKSNGEYAAILDRGTILHDDYQTPYRM 1094

Query: 303  LSHRNHPS----LSAYFDEGENLTPETVDKCPIPFFVYSH--GNLFYANPSFLLLTKYKS 356
            +      +            E    +  D   I         G +  AN +F+ +  Y  
Sbjct: 1095 VGSMIDITRLIDTEQKLSSSERKFRKVFDSNVIGMLFSDLYSGKILTANEAFVNMIGYTR 1154

Query: 357  VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
             +                  +   +    + + +   +        I  +  +   +   
Sbjct: 1155 EEIENQQVS----WQQITPEEYMEVGQAAVRQIEEHGVCPPFEKKYIHRDGRSISVLIGS 1210

Query: 417  PFEKANQFPENMPQNGIEPEDVDTRINKRKMEI----EVMQLCSILEATSDGI-AIINRE 471
                A    E +       E  +    + +++     +  +   I +     I       
Sbjct: 1211 ALLDAEDSNEVVTYIINITEQKENEQRRMELQKLIKKQQDEFYGIFKNAPAMITIRRTEN 1270

Query: 472  GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
             +    N A  + FG    + + K         +   +N    E+    +    +   L 
Sbjct: 1271 LVYEFVNNAFREFFG--DHEYIGKSSHEVKIGLSGESINEVEEEVFKTGVPHIGKSFLLE 1328

Query: 532  S----TKEEKLLSLRIIIKKLPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESS 583
                 + E +      I   +               D++E  +        +K  ++   
Sbjct: 1329 RIDPESGEHQDCWFDFIYTPVYNDQGVVDGIAFFGFDVTELVK-------GQKATKELMM 1381

Query: 584  HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
             K +F++  SHE++TP+T++ GF ++          + + +   N  +R    +  +V+D
Sbjct: 1382 KKDEFMSIASHELKTPITSMKGFLQIALKVAERNKSDLQVLGLINKANRQIGNLTLLVDD 1441

Query: 644  LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703
            LLD++KI++GKM  +F   ++   + E +  +Q    +  ++I      +     AD   
Sbjct: 1442 LLDVTKIQAGKMQFNFSTFNVKTLIEECVDDLQNT-EKHEVVIEQYVDVDA---YADRHR 1497

Query: 704  VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
            ++Q+  N LSNAI ++P  G+++IS+     + + + VRD G+G+ + + +     F ++
Sbjct: 1498 IEQVVRNFLSNAIKYSPEAGKVLISSEIE-GDMLRVAVRDFGIGIPSDKAKYVFDRFFRV 1556

Query: 764  PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
              S  +   G GLGL ++  +V+ + G   + S   KG+      PL     
Sbjct: 1557 QES-SVMFSGLGLGLYISSEIVERHGGTIGVNSEENKGSEFWFNIPLKQPDE 1607



 Score = 55.0 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/216 (11%), Positives = 63/216 (29%), Gaps = 6/216 (2%)

Query: 351 LTKYKSVDDIEIAGGLS-TLLDAPKLSDNNAIKPVML--YRSDRTCIAASARLHTIQWNR 407
           +    +V+ +     L  ++L     ++        L   RS+             +   
Sbjct: 612 VFSESTVEALPDKEDLVMSMLANDHQNEYVFELEAELNETRSNLQMAVEEMETTNEELQS 671

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
            N   ++     +++          +   + + ++  R++      L +   +T  G   
Sbjct: 672 SNEELLSANEELQSSNEELQSLNEELHTLNTEHQVKIRELVELNDDLDNYFRSTDIGQVF 731

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
           ++    I   N A   +      DI  +             +   +  +L       +EK
Sbjct: 732 LDASLYIRKFNPAAISMVNLIDADI-GRSIEHISNNIKAENLTGDIRSVLLTG--HLVEK 788

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                     L+ +   +++   +    +T  DIS 
Sbjct: 789 EVQLKNGNRSLMRIMPYVRRDKKTDGVVITFVDISH 824



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/359 (10%), Positives = 90/359 (25%), Gaps = 48/359 (13%)

Query: 238 NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297
             V  L          L+     + T+ E      E+  + N    +  +   +L     
Sbjct: 639 EYVFELEAELNETRSNLQMAVEEMETTNEELQSSNEELLSANEELQSSNEELQSLNEELH 698

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSV 357
                   +    +    D         + +     F+ +   +   NP+ + +      
Sbjct: 699 TLNTEHQVKIRELVELNDDLDNYFRSTDIGQ----VFLDASLYIRKFNPAAISMVNLIDA 754

Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
           D       +S  + A  L+ +     +                  +Q    N   M  +P
Sbjct: 755 DIGRSIEHISNNIKAENLTGDIRSVLLT----------GHLVEKEVQLKNGNRSLMRIMP 804

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL----EATSDGIAIINR--- 470
           + + ++  +         +              + +L +I+     A+ + +        
Sbjct: 805 YVRRDKKTD--GVVITFVDIS-----------HITELNNIITGVFNASLNAVLAFTAVRN 851

Query: 471 ------EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
                 +   +S N           E +        L + T   +      ++       
Sbjct: 852 QDHFITDFKCVSFNDVALDFLHKTREQLSNTMLVKQLPELTEGNLFAKYVNVVEKGTSLQ 911

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
            E         ++   L      +  S  ++ T+ DI+E K    +L            
Sbjct: 912 TEF----QNSSKRWYQL----VAVKMSDGFAATLTDITERKAADQRLKKNYNELIVARE 962


>gi|225872588|ref|YP_002754043.1| Sensory transduction histidine kinase [Acidobacterium capsulatum
           ATCC 51196]
 gi|225792000|gb|ACO32090.1| Sensory transduction histidine kinase [Acidobacterium capsulatum
           ATCC 51196]
          Length = 477

 Score =  290 bits (741), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 74/452 (16%), Positives = 177/452 (39%), Gaps = 32/452 (7%)

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
           ++       LL    L  ++    + +  +      A+ R+  I        A       
Sbjct: 53  LDNVRSTMHLLRRDLLVASSLAVLLAMLIAVYLARRAARRMGRIVTFANQIAAGDLSARM 112

Query: 420 KANQFPENMPQNGIEPEDVDTRINKR--KMEIEVMQLCSILEATSDGIAIINREGIILST 477
                 E +       +   +R+ +    +E +  +L ++L++  + +  ++ + ++  +
Sbjct: 113 NEADLDE-ISSVAHALDTTASRLEQSFHALESKQRELAALLDSMQEAVIAVDADSLVSWS 171

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
           N  + ++   P      +     +       +   +   L     ++ +  ++       
Sbjct: 172 NTVMQRI--APGAIREGRALVQTIRDPD---VLACVQGALEHREIRSAKARSVLPD---H 223

Query: 538 LLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
           +  +                +HD++  ++ +                + DF+A VSHE+R
Sbjct: 224 VFEVNAAPTP---DGGAVAVLHDVTGIERAEI--------------MRRDFVANVSHELR 266

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TPLT+I G+ E + +    P   P   E+   I ++ N +  +  DLL ++ +ESG+  L
Sbjct: 267 TPLTSISGYVETLLDT--TPDLPPHVQEFLGIILKNANRMNRLTEDLLALANVESGEYQL 324

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
           H +P++    + + I  +     +   L++        ++L D+ ++ Q+  N++ NA+ 
Sbjct: 325 HRQPIAASALLEDTIEGLAGMLVDSGFLLK-QRETTNTKVLVDIDAITQVFGNLIENAMK 383

Query: 718 FTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
           +  +G  + +      +  V   V+D G G+      +  + F ++  ++     GTGLG
Sbjct: 384 YGRTGQSVTVG-ARDCDGCVEFYVQDYGPGIAQEHQARIFERFYRVDKARSRESGGTGLG 442

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           L +A+ +V A+ G  ++ S    G    +  P
Sbjct: 443 LAIARHIVLAHEGTIHVESELGSGATFIVRLP 474


>gi|193216306|ref|YP_001997505.1| multi-sensor signal transduction histidine kinase [Chloroherpeton
           thalassium ATCC 35110]
 gi|193089783|gb|ACF15058.1| multi-sensor signal transduction histidine kinase [Chloroherpeton
           thalassium ATCC 35110]
          Length = 886

 Score =  290 bits (741), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 108/769 (14%), Positives = 240/769 (31%), Gaps = 69/769 (8%)

Query: 85  FTWNIDAHGYLKEISEELPKTIG--NYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNT 142
           F + ID    ++  ++   +           IG  + D +    +  +     L      
Sbjct: 142 FIY-IDKSLKIRAFNKFAEELTRKIYRRDISIGDSIFDYALDRKLMQSCIDTAL--TGKP 198

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGF--RGFGIVHVNRVDNDPRALGKRL 200
              +  +   +G      I +  +PI       +G       I          R + +R 
Sbjct: 199 VLFEKNMSETKGD--VAWIAINYMPILDAQNRVAGVCLNAIDISDKKEAQQTLRQVKERN 256

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS---SLTEYYAHKDDVLKTE 257
            + F+         S   +                 +  +S      + +  +    +  
Sbjct: 257 QEIFNQSIVGLYQCSMDGRLTKANPKFAELLGFGSPEEMISCEFRFDDNFYVEPKTREQF 316

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
              L  S   S    E     +  +    +Y    +N    +          S     ++
Sbjct: 317 LEKLNASGSVSDFISEV-RCRDGQKIWISEYARRQRNGETGAPVIEGSVIDVSEQKQTED 375

Query: 318 GENLTPETV----DKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
               + + +     K  +   +    G+    NP+   L  Y S D++      S     
Sbjct: 376 SLRKSHDLIISIYKKVDVGICLTNERGDFIETNPALCQLLGY-SHDELSQMSFFSMFPKT 434

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
                 +A + V     +++  + S     I  +    L    I      Q      +  
Sbjct: 435 ALEKVKHAHRLVF----NQSTESFSHETKCIHKSG--LLIDVMITEALMMQADGLRCKIT 488

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
              +  + +  +  +     +L +++      +   ++EGI         +  G     +
Sbjct: 489 TVSDITERKRTEYALRSVEDRLRTVVANVPVILIATDKEGIYTLVEGKGLQEVGINPRQL 548

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
           + K      + N    + + +  +    +  ++           +               
Sbjct: 549 IGKSAFDVFK-NHKRFLANIVRVLRGEVIHGSMNFY-------GRYFDTSASPIYNQDGQ 600

Query: 553 --CYSLTMHDISEWKQEKNKLSHAKKIAEKES--SHKSDFLARVSHEIRTPLTAIIGFSE 608
                    D++  +  + +    +K                 V+HE    L  I G + 
Sbjct: 601 IVGSISVSFDVTGRRNAEMEKERLQKQLLHSKKIEAIETLSGGVAHEFNNLLAVIAGNAG 660

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
           +++ +      + +  +Y N ID +      +   LL+ S+    + +   + +S++E++
Sbjct: 661 ILRRKL---KLDEQLRKYINQIDLATKRAATLTEKLLEFSR----QSDFEPKLISINESI 713

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT--------- 719
           +  I  ++  A +KRI +     N+IP+IL D   ++Q+ LN+  NA             
Sbjct: 714 NSVIVFLEH-AADKRIAMTCDLQNDIPKILGDRNQLEQVFLNLAVNACDAMLNAIDFNGT 772

Query: 720 -----------PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
                      P    I +     SN+ ++++V DTG G+     +K  +PF    +   
Sbjct: 773 GECHFKTRLIAPKTEDIELYHLEASNKYILVQVSDTGPGIPETCRDKVFEPFFTTKS--- 829

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
             G+GTGLGL +   +V+ + G     S+  KGT   I  P+ + +   
Sbjct: 830 -VGKGTGLGLSIVYGIVNNHQGAIDFESSKEKGTTFNIYLPVPEAALEE 877



 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/292 (10%), Positives = 91/292 (31%), Gaps = 37/292 (12%)

Query: 345 NPSFLLLTKYKSVDD----IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400
           N  +  L    S  +    +        ++    L   +  K + L ++ +  +      
Sbjct: 24  NDGYDFLLTCASRAEKYVSLLKEQPFDVVIAEYHLPSISGEKALSLAKALQPGVPFL--F 81

Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
            T + +++   ++     +       +           +    +  ++  +  L ++ E+
Sbjct: 82  FTNETDKQPIRSLLKKGADDVVFKNHHSRMGLAI----EAAFEREHLQFPLDSLRAVSES 137

Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520
           +      I++   I + N+   +L       I R+  ++       ++    +   +   
Sbjct: 138 SYQAFIYIDKSLKIRAFNKFAEELT----RKIYRRDISIGDSIFDYALDRKLMQSCIDTA 193

Query: 521 LR-QTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAK 575
           L  + +      S  +  +  + I    +  +        L   DIS+ K+ +  L   K
Sbjct: 194 LTGKPVLFEKNMSETKGDVAWIAINYMPILDAQNRVAGVCLNAIDISDKKEAQQTLRQVK 253

Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
           +  ++  +                  +I+G  +   + R     NP++ E  
Sbjct: 254 ERNQEIFNQ-----------------SIVGLYQCSMDGRL-TKANPKFAELL 287


>gi|73749197|ref|YP_308436.1| sensor histidine kinase [Dehalococcoides sp. CBDB1]
 gi|73660913|emb|CAI83520.1| sensor histidine kinase [Dehalococcoides sp. CBDB1]
          Length = 432

 Score =  290 bits (741), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 94/387 (24%), Positives = 181/387 (46%), Gaps = 29/387 (7%)

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAI-----INREGI-ILSTNRAVSKLFGYPVEDI 492
           + +  +   +    +  +I E + D I I     +   G  I+  N A  K FGY   ++
Sbjct: 56  EQKNQRLNFQKLYRKYKAIFEFSGDPIVISEIKSVGPHGRTIIEVNEAAIKHFGYSRSEL 115

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI--IIKKLPF 550
           L              ++  ++ + L+               K+  ++ + I   +  +  
Sbjct: 116 LLHDTAFLHPDEEVDIVLPWVGQELTRKHHVFF--EAKHKRKDGSIVDVEIHATMIAIDD 173

Query: 551 SSCYSLTMHDISEWKQEKN-------KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
           S      + DIS+ K  +           + ++  E +   +++F   + HE++TPLT I
Sbjct: 174 SPISLAVIRDISDRKNFEKKSQDLHLAEQNLRQELENQIQQRTEFYKALVHELKTPLTPI 233

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +  SEV+++   G        + AN I+ +   +L  +N+L D++K E G + +    + 
Sbjct: 234 VLNSEVLEDNLEG-----ESKKLANNINIASLELLTRINELYDMAKGEVGILKITRSWIY 288

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
           LDE V+E   L     N K++ +R  F+ ++P I AD   +KQ+ +N+L+N+I F+P  G
Sbjct: 289 LDELVNELFGLFSSSLNHKQLNLRIFFSPDLPLIYADPYRLKQVLINLLNNSITFSPPKG 348

Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
           QI++  T   + E+++ V D G+G+++ +L+K  KP+    +       G GLGL L+K 
Sbjct: 349 QIVLICTARDS-EIVMDVIDEGIGISDDDLQKLFKPYVLTKSD------GLGLGLSLSKK 401

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFPL 810
           +V+ + G+    ST   G+   +I P+
Sbjct: 402 IVELHNGEIKAESTLGWGSKFSVILPV 428


>gi|317483952|ref|ZP_07942889.1| hsp90-like protein [Bilophila wadsworthia 3_1_6]
 gi|316924826|gb|EFV45975.1| hsp90-like protein [Bilophila wadsworthia 3_1_6]
          Length = 800

 Score =  290 bits (741), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 99/497 (19%), Positives = 180/497 (36%), Gaps = 44/497 (8%)

Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399
            + +AN  F   T Y   +         +   +        +   +         +    
Sbjct: 37  TVIWANDFFYEKTGYGREEYEATFHNHVSEYYSAFPDVYETMGKFIKTALKHGEPSYEF- 95

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL- 458
           +  +     + + +  +                +  +  D    + +         SI  
Sbjct: 96  VCPMPVKGGSRIWIKVVGTFTKETVDGIPVIYSVFTDITDLVQAQTE--------KSITY 147

Query: 459 EATSDGIAIIN-------REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
           +     IA               L  N      FG             +        +N 
Sbjct: 148 DNLPGFIAKFQIRAGCAQERFTFLDANDRFIDFFGVRAAGDAPYSLVNWDSARNQQALNE 207

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRII---IKKLPFSSCYSLTMHDISE----- 563
           +   +      + +       T +     L++    I  +     Y     DI++     
Sbjct: 208 HYPAMREG---KPVHFTVQAKTLQNDDAWLQLNGDCIDVIQGDPVYLFIYIDITDITEQR 264

Query: 564 --WKQEKNK---LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
              K+ + +   L +A ++AE+ +  KSDFL+R+SH+IRTP+ AI+G   + K     P 
Sbjct: 265 VLQKKLEERSELLRNALEMAERANRAKSDFLSRMSHDIRTPMNAIMGMLSIAKESWDDP- 323

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
              R  +  + ++ S   +L ++ND+LD+SKIESGK  L  +            ++    
Sbjct: 324 --DRVRDCLDKVENSARFLLALINDILDMSKIESGKAILKKKAFDFAAFTRNLAAMFYGQ 381

Query: 679 ANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN--- 734
           A +K++  +     ++      D   + QI +N+L NAI FT  GG +++S         
Sbjct: 382 AEKKQVRFQVLLGRSLAEAYVGDELKLNQILINLLGNAIKFTEPGGSVLLSVQEDKRSNK 441

Query: 735 -EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
             E++  V DTG+GM    L+K  +PF Q  + Q+    G+GLGL +A+       G   
Sbjct: 442 ASELVFTVTDTGIGMEKSFLKKIFEPFEQ-DSQQRSNQGGSGLGLSIAEKYARMMNGGIE 500

Query: 794 IFSTPAKGTLI--EIIF 808
           + STP KG+     I  
Sbjct: 501 VDSTPGKGSTFVARIWL 517


>gi|253577341|ref|ZP_04854658.1| PAS sensor protein [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843241|gb|EES71272.1| PAS sensor protein [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 632

 Score =  290 bits (741), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 89/465 (19%), Positives = 182/465 (39%), Gaps = 28/465 (6%)

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE--NSL 411
           Y  + D      +S L+ +  L          +       I        +  +      L
Sbjct: 176 YSPIADAINKQMISQLIVSLSLLALMVAGSYWMAGGLIRPIRHILDQVNVLASGRLDTRL 235

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471
            ++            N+  + +     + R    +       L SI+  T+D I I + +
Sbjct: 236 KVSSFDELGLLAHKINIMADNLGRYTTELRQKSEENRSMKEYLESIISQTADAIHITDVK 295

Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
           G +L  N A  +L+G+  E+I+ K      E              +       L +    
Sbjct: 296 GRVLQVNAAFERLYGWSSEEIVGKYLDFLPESELDGRTIWRPENEVIETAESVLAETVRL 355

Query: 532 STKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
             K+   + + I +  +   +           D++E  + ++ L  ++K+          
Sbjct: 356 R-KDGSQVEVSISVSPIFDQAGKITALISISRDMTEHNKMEDLLRRSEKLTTV-----GQ 409

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
             A V+HEIR PLT + GF ++ +  R   +       + + +    + +  IV++ L +
Sbjct: 410 LAAGVAHEIRNPLTTLRGFLQMQQRTRVVNVM------HTDVMLAELDRINLIVSEFLIL 463

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707
           +K ++ +  +      +   + + +SL+   A+   I     F+ +   +  +   +KQ+
Sbjct: 464 AKPQAVQFQIK----DVRFTMGDVVSLLDSEAHLHNIEFEVHFSPSPVLVHCEENQLKQV 519

Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
            +N+L NA+   P GG+I++      +   +LRV D G G++   L+K  +PF       
Sbjct: 520 FINLLKNAMEAMPKGGKILLQVEEDDSGFAVLRVIDEGEGISKDRLQKLGEPFYT----- 574

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
             + +GTGLGL +++ +++ + G   I S   KGT + I  PL  
Sbjct: 575 -NKEKGTGLGLMISQRIIEGHRGTLKIESELGKGTAVTITLPLVQ 618



 Score = 65.4 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 16/118 (13%), Positives = 43/118 (36%), Gaps = 8/118 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN---NHIGDLLKRQNTWYG 145
            D  G + +++    +  G  + +++G    D      +D         ++++   +   
Sbjct: 292 TDVKGRVLQVNAAFERLYGWSSEEIVGK-YLDFLPESELDGRTIWRPENEVIETAESVLA 350

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
           +T     +G+   V + ++  PI+ +  + +      I       N    L +R +K 
Sbjct: 351 ETVRLRKDGSQ--VEVSISVSPIFDQAGKITAL--ISISRDMTEHNKMEDLLRRSEKL 404



 Score = 46.9 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 13/141 (9%), Positives = 37/141 (26%), Gaps = 7/141 (4%)

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
           S      +      + +      +    G +   N +F  L  + S + +         L
Sbjct: 268 SEENRSMKEYLESIISQTADAIHITDVKGRVLQVNAAFERLYGWSSEEIVGKYLD---FL 324

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
              +L      +P        T  +  A    ++ +    + ++       +Q  +    
Sbjct: 325 PESELDGRTIWRPENEVI--ETAESVLAETVRLRKDGSQ-VEVSISVSPIFDQAGKITAL 381

Query: 431 NGIEPEDVDTRINKRKMEIEV 451
             I  +  +    +  +    
Sbjct: 382 ISISRDMTEHNKMEDLLRRSE 402


>gi|299136566|ref|ZP_07029749.1| multi-sensor hybrid histidine kinase [Acidobacterium sp. MP5ACTX8]
 gi|298601081|gb|EFI57236.1| multi-sensor hybrid histidine kinase [Acidobacterium sp. MP5ACTX8]
          Length = 931

 Score =  290 bits (741), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 75/270 (27%), Positives = 127/270 (47%), Gaps = 14/270 (5%)

Query: 556 LTMHDISEWK----QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
               ++SE +    + +       + AE  S  KS+FLA +SHEIRTPL  IIG +++  
Sbjct: 253 AVQLELSEQRYRMIEAEAAGRERVRAAEASSQAKSEFLANMSHEIRTPLNGIIGMTDLAL 312

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
                        +Y   +  SG+ +L+++ND+LD SKIE+GK+ L     +L   +   
Sbjct: 313 ETEL----TQEQRDYLETVKLSGDALLNVINDILDFSKIEAGKIELEEIDFNLCNCIEGT 368

Query: 672 ISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
           +  + L A+EK + +    + +I  ++  D   ++QI LN++ NAI FT  G +I +   
Sbjct: 369 LKTLALRADEKGLELLCDVSPHIAEVVSGDPGRLRQILLNVIGNAIKFTSKG-EISLKVK 427

Query: 731 H----TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
                     +   + DTG+G+   +L      F Q   S      GTGLGL +++ +V+
Sbjct: 428 SDLIEEKKSILHFIITDTGIGIAPEKLTTIFDSFNQADTSTTREFGGTGLGLTISRCLVE 487

Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
              GK ++ S    G+      P+     P
Sbjct: 488 MMGGKLWVESEVGVGSQFHFTIPMKYVDTP 517


>gi|89093662|ref|ZP_01166609.1| histidine kinase response regulator hybrid protein [Oceanospirillum
           sp. MED92]
 gi|89082058|gb|EAR61283.1| histidine kinase response regulator hybrid protein [Oceanospirillum
           sp. MED92]
          Length = 670

 Score =  290 bits (741), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 78/279 (27%), Positives = 132/279 (47%), Gaps = 11/279 (3%)

Query: 536 EKLLSLRIIIKKLPF-SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
             + ++    K L        + + +       + +L    K  E  + +KS F++ VSH
Sbjct: 127 GTICTISNEPKTLTDWQRNALVVLRN---EVISRLELRKKIKQLESANQYKSIFVSNVSH 183

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           EIRTP+  ++G  +++         N + + YA  I RSG+ +L ++ND+LD+SK+E+GK
Sbjct: 184 EIRTPMNGVMGLIDLLLETPL----NDKQLRYAQAIKRSGDSLLRVINDVLDLSKVEAGK 239

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714
           + +     +L E V +        A EK++ +RT       R + D   +KQI  N+LSN
Sbjct: 240 LTIEKAEFNLGEVVDDLTECFSPLATEKKLELRTDIQLKSDRFIGDHYRLKQILNNLLSN 299

Query: 715 AIHFTPSGG---QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           AI FT  G    +I + +       +   V DTG+G++  +  +  K F Q   +     
Sbjct: 300 AIKFTDKGWTALRIKVVSETDDQATLKFSVSDTGLGLSEKQQSQLFKRFQQANETITREF 359

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            G+GLGL + K ++    G   + S P KG+      PL
Sbjct: 360 GGSGLGLSICKQLLALMDGDIGVKSEPGKGSTFWFTLPL 398


>gi|270295411|ref|ZP_06201612.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270274658|gb|EFA20519.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 388

 Score =  290 bits (741), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 83/384 (21%), Positives = 152/384 (39%), Gaps = 33/384 (8%)

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE----------- 502
             +I+      + +INR+  +  TN     + G        +   +              
Sbjct: 8   FRAIMRNLHAYVLLINRDFTVFYTN--YYDITGAVKPAETGRVGDILRCNNALSAAGGCG 65

Query: 503 ----QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS----LRIIIKKLPFSSCY 554
                    V N      +       L  I      E +       +     ++    C 
Sbjct: 66  THDLCEHCPVRNAIENAFVVRKNFTDLAAILNLRDSEGRTTECNAYVSGEYMEIEDRDCM 125

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
            +T+HDI+  KQ + +L  A++ AE     KS FLA +SHEIRTPL AI+GFSE++    
Sbjct: 126 VITVHDITRLKQVEAELKLAREKAENADRSKSVFLANMSHEIRTPLNAIVGFSELLA--- 182

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                +    ++   +  +  ++  ++ D+LD+SKIE+G +   F  V +++ +S+    
Sbjct: 183 -SASTDEEKTQFLEIVQSNNEMLQQLIADILDLSKIEAGTLEFVFSDVDINQMMSDLEQQ 241

Query: 675 VQLYANE--KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
            ++   E    + I    +     +  D   + Q+  N ++NA+ FT  G  I +     
Sbjct: 242 FRMRVAELGSGVQIVREASEKEYTMHTDRNRLAQVVSNFMTNALKFTQEGS-ITLGFRPY 300

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
               +   V+DTG G+   +L    + F ++   +     GTGLGL + + +V    G+ 
Sbjct: 301 EEG-LYFYVKDTGTGIPQEKLPHVFERFVKLKQEKN----GTGLGLSICQTIVRKLGGEI 355

Query: 793 YIFSTPAKGTLIEIIFPLYDTSHP 816
            + S    G+      P    + P
Sbjct: 356 GVESEEGAGSTFWFTLPWEPATRP 379


>gi|307155247|ref|YP_003890631.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306985475|gb|ADN17356.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 762

 Score =  290 bits (741), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 75/245 (30%), Positives = 125/245 (51%), Gaps = 5/245 (2%)

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK--NQRFGPLGNPRYIEY 626
            +L  +  +A+     KS+FL+ +SHE+ TPLT +IG +  +   +     L   +  +Y
Sbjct: 370 EELRSSIAVAQSAHLSKSEFLSNISHELLTPLTCVIGLAGTLLHWSGEQSSLSPEKQRKY 429

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
              I ++G  ++D++ND+LD S I SG   L+    SL   V+  +      A +K I +
Sbjct: 430 IESIQKNGKKLMDLINDILDYSSITSGDYQLNIHEFSLYSVVNSVLRDFASEAQKKSIDL 489

Query: 687 RTSFA--NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744
              F          AD   +KQI  +++SNAI FTP  G++ +        +V  +V DT
Sbjct: 490 ILDFQVQKEENDFYADRERIKQILSHLISNAIKFTPDQGKVTLRI-WREKSQVFFQVEDT 548

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G++  +L    + F Q+  ++Q    GTGLGL L K +V+ + G   + STP +G+L 
Sbjct: 549 GIGISQEQLPLLFEKFQQLEKARQRTHGGTGLGLALTKQLVELHRGTIEVESTPEQGSLF 608

Query: 805 EIIFP 809
            +  P
Sbjct: 609 TVRIP 613


>gi|94269400|ref|ZP_01291450.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93451231|gb|EAT02132.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 539

 Score =  290 bits (741), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 91/322 (28%), Positives = 155/322 (48%), Gaps = 8/322 (2%)

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556
              FL       +        +    Q   +I +   +  +L+       ++        
Sbjct: 109 LLAFLRHGVAYALEEEKRREEAAQDEQYRHQIEVLKKQHGELIEDNYRQYRINQQQQEEY 168

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
           T +  SE  ++  +L  A    E+ S  KS+FLA +SHE+RTP+ AI GF+E++      
Sbjct: 169 TRNLESEIARQTAELRQANARLEESSRLKSEFLANMSHELRTPMNAITGFAELLAETPL- 227

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
              N    EY   I ++   +L+++ND+LD++KIE+GK++L   P SLDE +    ++  
Sbjct: 228 ---NQEQDEYCRTIRQAAAALLNLINDILDLAKIEAGKLDLETVPFSLDELLEGVRAMFT 284

Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSN 734
           L A +K I I       +P  +  D   ++Q+ +N+L NAI FT  GG ++ ++   T+ 
Sbjct: 285 LAARKKGIEITIKRGEGLPDTLRGDSHRLRQVLINLLGNAIKFTEQGGVELEVAAGSTAA 344

Query: 735 EEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
           ++V     VRD+G+G++ + LE   + F Q   S   R  GTGLGL + + +V+   G+ 
Sbjct: 345 DKVRLFFAVRDSGMGISPHRLEAIFEKFTQADGSTTRRFGGTGLGLAICRQLVELMGGQI 404

Query: 793 YIFSTPAKGTLIEIIFPLYDTS 814
            + S   KG+       L   S
Sbjct: 405 EVSSQQGKGSTFSFEIELERES 426


>gi|67920227|ref|ZP_00513747.1| Response regulator receiver:GAF:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal [Crocosphaera
           watsonii WH 8501]
 gi|67857711|gb|EAM52950.1| Response regulator receiver:GAF:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal [Crocosphaera
           watsonii WH 8501]
          Length = 758

 Score =  290 bits (741), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 76/262 (29%), Positives = 127/262 (48%), Gaps = 11/262 (4%)

Query: 563 EWKQEK--NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK--NQRFGPL 618
           E +  +    L      ++  +  KS+FL  +SHE+RTPLT IIG S  +   +Q    L
Sbjct: 362 EQRVIESTQALRDTLIASQAANHSKSEFLGNMSHELRTPLTCIIGLSGTLLHWSQEGLNL 421

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
              +  +Y + I  SG  +LD++N++L+ S ++SGK  L     SL +     +  V   
Sbjct: 422 PVDKQRKYLDTIQNSGKHLLDMINEILEYSNLQSGKYVLSVRYFSLTKVAKNVMQRVSDE 481

Query: 679 ANEKRILIRTSF--ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
           +  +RI +              AD   V+QI  ++L+NA+ FT   G++ +      N +
Sbjct: 482 SEHRRINLELDLQIEPQKDSFSADPERVQQILYHLLNNALKFTSKNGKVTLRVWLEKN-Q 540

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           + L V DTG+G+   ++    + F Q+ NS++    GTGLGL L K +V+ + G   + S
Sbjct: 541 LCLEVEDTGIGIEEEKIPLLFESFQQLENSRRRVYGGTGLGLALTKQLVELHGGTIEVES 600

Query: 797 TPAKGTLIEIIFPLYDTSHPHD 818
              KG+   +  P    S P +
Sbjct: 601 IINKGSTFTVRIP----SQPQN 618


>gi|317484882|ref|ZP_07943772.1| hsp90-like protein [Bilophila wadsworthia 3_1_6]
 gi|316923864|gb|EFV45060.1| hsp90-like protein [Bilophila wadsworthia 3_1_6]
          Length = 603

 Score =  290 bits (741), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 103/502 (20%), Positives = 190/502 (37%), Gaps = 54/502 (10%)

Query: 324 ETVDKCPIPFFV------YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
             V K P  F        +    +  +   +L +    ++  +  A GLST L   + S 
Sbjct: 143 AAVGKLPDGFIRVAVPLKHVEERIAQSERQWLAIVGLATLIALLFAYGLSTHL---ERSL 199

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
              I+ V    +D +      RLH +                   +F           + 
Sbjct: 200 KEMIRVVESIATDPSGQGNRRRLHILP----------------GREFRRLAHAVNDMADR 243

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
            +  +  R +     QL +IL+  ++G+ +I  +G I   N A+ +LF    +   + P 
Sbjct: 244 TEEHL--RTIAENKAQLKTILDVMNEGVLVIGEKGRIRLVNPALVRLFPQAKDAEGKFPV 301

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT 557
            V         ++  L+         TLE        +  L    I  ++          
Sbjct: 302 EVIPAAEIQQALDELLSAPQDKPRLITLEVE---PRPDMILSVQFIRPREAIHDVLAVAV 358

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
            HDISE                +    + +F+A VSHE+RTPLTAI G++E +++     
Sbjct: 359 FHDISE--------------MARLMRVRKEFVANVSHELRTPLTAIAGYAETLRDS--AA 402

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
                  ++A  I R+   +  +V DLL +S+IESG + +  E V     +S+  +  Q 
Sbjct: 403 EDPSICAKFAETILRNAQHMGTMVEDLLKLSRIESGAVPMEMETVKAASILSDVTTACQP 462

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-- 735
                 + + T     +  + AD   + Q+  N++ NA  + P G  I +S     +   
Sbjct: 463 QTAAHNLTLETDIDPAL-TVRADPHFIGQVFRNLIENACRYAPEGSTIKVSGGKRLDHNG 521

Query: 736 --EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
             E +  + D G G+   ++ +  + F ++   +      TGLGL + K +V+ + G+ +
Sbjct: 522 LPEALFMICDDGPGIPQADIARVFERFYRVEKHRSSPAS-TGLGLAICKHIVERHGGRIW 580

Query: 794 IFSTPAKGTLIEIIFPLYDTSH 815
               P     ++   PL   + 
Sbjct: 581 AEPGPGG--CLQFTLPLAAETE 600


>gi|300778247|ref|ZP_07088105.1| sensor histidine kinase [Chryseobacterium gleum ATCC 35910]
 gi|300503757|gb|EFK34897.1| sensor histidine kinase [Chryseobacterium gleum ATCC 35910]
          Length = 395

 Score =  290 bits (741), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 81/396 (20%), Positives = 162/396 (40%), Gaps = 41/396 (10%)

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
                L +I+E   DGI  I+  G I + N +  K+FGY  E+++ K  ++ + +   S 
Sbjct: 2   ESSRLLHAIIETAIDGIITIDSRGRIENLNPSALKIFGYTEEELIGKNISMLMPEPDHSR 61

Query: 509 MNHYLTEILSLDLRQTL--EKITLGSTKEEKLLS--LRIIIKKLPFSSCYSLTMHDISEW 564
            + YL    +   ++ +   +   G  K+       L +   +L     Y+  +HD+S+ 
Sbjct: 62  HDSYLLRYQNTGEKKIIGKGREVKGLRKDGSQFPFRLAVSEVQLNDRVIYTGFIHDLSKE 121

Query: 565 KQEK--------------------------------NKLSHAKKIAEKESSHKSDFLARV 592
           K+ +                                 + + + +  ++ +  KS F++  
Sbjct: 122 KEAEEFLKKYTIELEDLVEKRTKSLQEMLSALEKAKEEANISLEKEKELNRMKSRFVSMA 181

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHE RTPL+++   S V+  +      + +  ++ + I  +   +  I+ND L + K+E+
Sbjct: 182 SHEFRTPLSSMQ-LSVVLIEKYLQLADHSQIQKHLHKIKNAITGLNGILNDFLSLEKLEA 240

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712
           G +   +    +     E +  +QL   + +I+I         R+  D   ++   +N++
Sbjct: 241 GIVTPDYHEFDIIRFSEELVEEMQLITKDNQIII-YQHTGVENRVFLDQNLLRNCLMNLI 299

Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           SNAI ++     I   T        ++ V+D G+G+   +     +PF +  N       
Sbjct: 300 SNAIKYSGENTLIEFCTEINKE-YYLMTVKDNGIGIPEEDHSALFQPFFRAHN--IGNIP 356

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           GTGLGL +    V+   G     S   +GT   + F
Sbjct: 357 GTGLGLNIVLRYVNLMNGHIDFNSASGQGTQFTLSF 392



 Score = 42.7 bits (99), Expect = 0.24,   Method: Composition-based stats.
 Identities = 22/151 (14%), Positives = 52/151 (34%), Gaps = 19/151 (12%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY---- 144
           ID+ G ++ ++    K  G    ++IG  +  +      D + H   LL+ QNT      
Sbjct: 21  IDSRGRIENLNPSALKIFGYTEEELIGKNISMLMPE--PDHSRHDSYLLRYQNTGEKKII 78

Query: 145 ---GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK--- 198
               +      +G+     + ++ + +  R      + GF  +H    + +     K   
Sbjct: 79  GKGREVKGLRKDGSQFPFRLAVSEVQLNDR----VIYTGF--IHDLSKEKEAEEFLKKYT 132

Query: 199 -RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228
             L+       +  +   S  ++  +  +  
Sbjct: 133 IELEDLVEKRTKSLQEMLSALEKAKEEANIS 163


>gi|225626475|ref|ZP_03784514.1| sensory box histidine kinase [Brucella ceti str. Cudo]
 gi|294851326|ref|ZP_06791999.1| sensory box histidine kinase [Brucella sp. NVSL 07-0026]
 gi|225618132|gb|EEH15175.1| sensory box histidine kinase [Brucella ceti str. Cudo]
 gi|294819915|gb|EFG36914.1| sensory box histidine kinase [Brucella sp. NVSL 07-0026]
          Length = 870

 Score =  290 bits (741), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 131/724 (18%), Positives = 263/724 (36%), Gaps = 49/724 (6%)

Query: 110 AFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN--TWYGKTTLWPIEGTNLYVPIDLAALP 167
              ++G                  G  L+ Q+        +    +     + ++     
Sbjct: 161 RADVVGQLPDACGAPQDRPAFLAFGRWLRPQSVTALERAISTLREQARAFDLTVETVNGS 220

Query: 168 IYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ 227
           +   +   SG  GF +    +     +A    L+ +   L +  +    +          
Sbjct: 221 LLDVHGRTSG--GFAVA-CFQSLQGVQAERASLEAQNRELADRIELMRRLLDRIEQPAWL 277

Query: 228 QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287
           +     +   N   +     A+    + +E   L  ++     E++ F    + +     
Sbjct: 278 RDGNGRIEWVNLAYAQAVDMANASQ-VISEGRELFGAQARQRLERDRFAEPVVQEQLTAV 336

Query: 288 YFGTLQ--------NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG 339
             G  +          S             ++            ET+D+      ++   
Sbjct: 337 VHGDRRVFDVIDVSAESGSVGLGFDLTEVQAVRDELSRTLKSHAETLDQLSTAVAIFDPE 396

Query: 340 -NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398
             L + N +F+ L     V  +E     + + D  +       +P      D    A  A
Sbjct: 397 MKLQFFNQAFVKLWGL-DVAWLETRPSNTLIFDRLRAEGKLPEQPEWRKWKDSLLSAYRA 455

Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI- 457
                    E    M  +P  +  +   N    G      +    K ++E     L  + 
Sbjct: 456 V--------EPEEHMWHLPDTRTMRVVANPHPQGGVTWFFENMTEKFELEGRYNTLIKVQ 507

Query: 458 ---LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYL 513
              L+  ++ +A+   +G +  +N + + L+  P E +      ++  +       +   
Sbjct: 508 GETLDHLAEAVAVFGSDGRLRLSNPSFAALWSLPSEMVREGTHISIIAKLCNQRGGDGLW 567

Query: 514 TEILSLDLRQTLEKITL---GSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570
            + +S       ++          +  +LS  ++           LT  D+++  + +  
Sbjct: 568 EDFVSTVTGFLDQRDGRMGQVELSDGAILSFAVVPLP---KGQTMLTFIDVTDTVRVERA 624

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           L    +  E     K+DF+  VS+E+R+PLT IIGF+E+++   FG L N R +EY ++I
Sbjct: 625 LKEKNEALELADQIKNDFVQHVSYELRSPLTNIIGFTELLQTPAFGSL-NERQLEYLDHI 683

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
             S +++L IVND+LD++ +++G M L    VS+ EA+S A S V     +  I +    
Sbjct: 684 STSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEAISAAASRVSERLRDHNIGLDVDI 743

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
           A+++    AD   V+Q+  N+LSNA+++ P G  I++        +V+  V D G GM +
Sbjct: 744 ADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVLQVA-RDGADVVFAVHDDGHGMPS 802

Query: 751 YELEKAMKPFGQIPN-----SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
             L+   K F   PN        +          + K+ V+ + G+  I +   +GT + 
Sbjct: 803 EVLDTVFKRFQSYPNGGRRRGAGLGLA-------IVKSFVELHGGRVEIDTGEERGTTVI 855

Query: 806 IIFP 809
             FP
Sbjct: 856 CRFP 859


>gi|253699184|ref|YP_003020373.1| histidine kinase [Geobacter sp. M21]
 gi|251774034|gb|ACT16615.1| histidine kinase [Geobacter sp. M21]
          Length = 550

 Score =  290 bits (741), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 80/270 (29%), Positives = 131/270 (48%), Gaps = 17/270 (6%)

Query: 559 HDISEWKQEKNKLSHA-------KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
            +I E KQ +  L  A       ++ +E  +  K++FLA +SHE+RTPL   +G   ++ 
Sbjct: 274 KEIEERKQYEQALLQAGERLAVAQRQSEAANRAKTEFLANMSHEMRTPLAGALGMIRLVL 333

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
           +   G        +      RS + ++ I+ DLLD S++E+G M    +P  L E V  A
Sbjct: 334 DMNIGA----EERQLLEMAKRSADSLVRIIADLLDFSRLEAGVMTFEDKPFLLKEVVRSA 389

Query: 672 ISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIIST 729
           + +V L A EK + +  +    +P  +  D   ++Q+ +N+L NA+ FT  GG ++ I T
Sbjct: 390 VEVVSLVAEEKGLSLSWAVNAAVPEQLRGDEGRLRQVLVNLLGNAVKFTERGGIEVGIGT 449

Query: 730 ----THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
                    + V   VRDTGVG+   +LE+    F Q+ +S   R  GTGLGL L + +V
Sbjct: 450 FEPLEAQGEQYVEFSVRDTGVGIPADQLERIFDRFTQVDSSLTRRHGGTGLGLALTRQIV 509

Query: 786 DANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
           +   G  +  S    G+      P+   + 
Sbjct: 510 EKMGGSIWAESVVGSGSTFHFTVPMVSNAA 539


>gi|168333377|ref|ZP_02691657.1| multi-sensor signal transduction histidine kinase [Epulopiscium sp.
           'N.t. morphotype B']
          Length = 681

 Score =  290 bits (741), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 80/385 (20%), Positives = 172/385 (44%), Gaps = 6/385 (1%)

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
           +       +  ++      +        ++LE    G+   N +  I   N   ++L   
Sbjct: 271 IGAIIAYTDITESERLDMSIRKNEQMYHAVLERLPIGVVATNPKEGITFYNEEFARLLKL 330

Query: 488 PVE-DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
             + D+L K    ++ Q+           + S +  +++ +  L     E  + + +   
Sbjct: 331 SSQTDLLGKNLLSYIRQDKKRKFIDTFFSL-SPEKFKSITQTMLDKEGTEIEVKIDMTKA 389

Query: 547 KLPFSSCYSLTMHDISEWKQEKN--KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
            L        ++ DI +    K   +    K+   + + +++++ A +SH++R P+  I 
Sbjct: 390 ILDNKLTDIFSIRDIRDELNIKKFKERLDQKEKQIETAKYQTEYFANISHDLRAPINVIS 449

Query: 605 GFSEVI-KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
             ++++          N    +Y+  I ++   +L +VN+++D++KIESG   +H   V+
Sbjct: 450 SAAQLMSLRDVQRDFDNGTIDKYSEIIKQNCTRLLKLVNNVIDMNKIESGFYIMHISKVN 509

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
           +   V E    ++ Y   K I +          +  D+ S+++I LN+LSNA+ FTP+GG
Sbjct: 510 IVNLVEELTLSIRSYTEAKNIELIFDTEIEECIVEIDIDSMERIILNLLSNAVKFTPNGG 569

Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
           +I +   +     VI+ V+DTG G+   +L+   + F Q    +  + +G+G+GL L K+
Sbjct: 570 KIDVRI-YQDFPNVIISVKDTGRGIEADKLDIIFERFKQARTKKDKKEQGSGIGLSLVKS 628

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIF 808
           +V+   G   + S   +G+  ++I 
Sbjct: 629 LVELQGGLVDVTSVVGEGSEFKVIL 653



 Score = 43.9 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 19/129 (14%), Positives = 48/129 (37%), Gaps = 1/129 (0%)

Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ- 523
           I +++++  I   +  +    GY  +DI        +     S+   YL  +++ D    
Sbjct: 65  ITVLDKDLKIKQISTRLINFLGYTQDDIRPNFLESIIVPEDYSLRQQYLKNMVTSDSTSF 124

Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
            L         + K +    +     F+    ++  D++E  +++  L ++  + E   +
Sbjct: 125 ILVNRMKTKNGDIKYIECYYVYNPDQFNDDIYISSIDVTERAKKEMDLQNSYDLDELLLN 184

Query: 584 HKSDFLARV 592
                +A V
Sbjct: 185 SIETKVAAV 193


>gi|62290941|ref|YP_222734.1| sensory box histidine kinase [Brucella abortus bv. 1 str. 9-941]
 gi|82700852|ref|YP_415426.1| ATPase-like ATP-binding protein [Brucella melitensis biovar Abortus
           2308]
 gi|189025153|ref|YP_001935921.1| sensory box histidine kinase, hypothetical [Brucella abortus S19]
 gi|254690232|ref|ZP_05153486.1| sensory box histidine kinase, hypothetical [Brucella abortus bv. 6
           str. 870]
 gi|254731263|ref|ZP_05189841.1| sensory box histidine kinase, hypothetical [Brucella abortus bv. 4
           str. 292]
 gi|256258485|ref|ZP_05464021.1| sensory box histidine kinase, hypothetical [Brucella abortus bv. 9
           str. C68]
 gi|260546204|ref|ZP_05821944.1| histidine kinase [Brucella abortus NCTC 8038]
 gi|297247326|ref|ZP_06931044.1| ATPase-like ATP-binding protein [Brucella abortus bv. 5 str. B3196]
 gi|62197073|gb|AAX75373.1| sensory box histidine kinase, hypothetical [Brucella abortus bv. 1
           str. 9-941]
 gi|82616953|emb|CAJ12057.1| ATP-binding region, ATPase-like:Histidine kinase A,
           N-terminal:Bacterial sensor protein,
           C-terminal:Histidine kinase [Brucella melitensis biovar
           Abortus 2308]
 gi|189020725|gb|ACD73447.1| sensory box histidine kinase, hypothetical [Brucella abortus S19]
 gi|260096311|gb|EEW80187.1| histidine kinase [Brucella abortus NCTC 8038]
 gi|297174495|gb|EFH33842.1| ATPase-like ATP-binding protein [Brucella abortus bv. 5 str. B3196]
          Length = 859

 Score =  290 bits (741), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 132/724 (18%), Positives = 263/724 (36%), Gaps = 49/724 (6%)

Query: 110 AFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN--TWYGKTTLWPIEGTNLYVPIDLAALP 167
              ++G                  G  L+ Q+        +    +     + ++     
Sbjct: 150 RADVVGQLPDACGAPQDRPAFLAFGRWLRPQSVTALERAISTLREQARAFDLTVETVNGS 209

Query: 168 IYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ 227
           +   +   SG  GF +    +     +A    L+ +   L +  +    +          
Sbjct: 210 LLDVHGRTSG--GFAVA-CFQSLQGVQAERASLEAQNRELADRIELMRRLLDRIEQPAWL 266

Query: 228 QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287
           +     +   N   +     A+    + +E   L  ++     E++ F    + +     
Sbjct: 267 RDGNGRIEWVNLAYAQAVDMANASQ-VISEGRELFGAQARQRLERDRFAEPVVQEQLTAV 325

Query: 288 YFGTLQ--------NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG 339
             G  +          S             ++            ET+D+      ++   
Sbjct: 326 VHGDRRVFDVIDVSAESGSVGLGFDLTEVQAVRDELSRTLKSHAETLDQLSTAVAIFDPE 385

Query: 340 -NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398
             L + N +F+ L     V  +E     + + D  +       +P      D    A  A
Sbjct: 386 MKLQFFNQAFVKLWGL-DVAWLETRPSNTLIFDRLRAEGKLPEQPEWRKWKDSLLSAYRA 444

Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI- 457
                    E    M  +P  +  +   N    G      +    K ++E     L  + 
Sbjct: 445 V--------EPEEHMWHLPDTRTMRVVANPHPQGGVTWFFENMTEKFELEGRYNTLIKVQ 496

Query: 458 ---LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYL 513
              L+  ++ +A+   +G +  +N + + L+  P E +      ++  +       +   
Sbjct: 497 GETLDHLAEAVAVFGSDGRLRLSNPSFAALWSLPSEMVREGTHISIIAKLCNQRGGDGLW 556

Query: 514 TEILSLDLRQTLEKITL---GSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570
            + +S       ++          +  +LS  ++           LT  D+++  + +  
Sbjct: 557 EDFVSTVTGFLDQRDGRMGQVELSDGAILSFAVVPLP---KGQTMLTFIDVTDTVRVERA 613

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           L    +  E     K+DF+  VS+E+R+PLT IIGF+E+++   FG L N R +EY +YI
Sbjct: 614 LKEKNEALELADQIKNDFVQHVSYELRSPLTNIIGFTELLQTPAFGSL-NERQLEYLDYI 672

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
             S +++L IVND+LD++ +++G M L    VS+ EA+S A S V     +  I +    
Sbjct: 673 STSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEAISAAASRVSERLRDHNIGLDVDI 732

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
           A+++    AD   V+Q+  N+LSNA+++ P G  I++        +V+  V D G GM +
Sbjct: 733 ADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVLQVA-RDGADVVFAVHDDGHGMPS 791

Query: 751 YELEKAMKPFGQIPN-----SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
             L+   K F   PN        +          + K+ V+ + G+  I +   +GT + 
Sbjct: 792 EVLDTVFKRFQSYPNGGRRRGAGLGLA-------IVKSFVELHGGRVEIDTGEERGTTVI 844

Query: 806 IIFP 809
             FP
Sbjct: 845 CRFP 848


>gi|116073625|ref|ZP_01470887.1| multi-sensor signal transduction histidine kinase [Synechococcus
           sp. RS9916]
 gi|116068930|gb|EAU74682.1| multi-sensor signal transduction histidine kinase [Synechococcus
           sp. RS9916]
          Length = 683

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 76/395 (19%), Positives = 172/395 (43%), Gaps = 41/395 (10%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            ++    ++  S++   +DG  +++ +G I+  N    +LF +    +  + F   L + 
Sbjct: 282 EELTAAQVKQASLIATMADGAVLLDAQGQIVLANPTARRLFRWEGRKLEGQDFLGELPEL 341

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEE-KLLSLRIIIKKLPFSSCYSLTMHDISE 563
               ++  L  +L         + + G      + +   +           ++T+ D++ 
Sbjct: 342 LSVELHSTLDAVLCNSADSNELRSSAGEPPRTLRFVFQAVRDASGESLKGIAVTIQDLTR 401

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
                           + ++ +S F++ VSHE+RTPL  I  + E + +     L     
Sbjct: 402 --------------EVELNAAQSRFISNVSHELRTPLFNIKSYVETLHD-LGDQLSADEQ 446

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            E+    +   + +  +VND+LD+S++ESG++ + FEPVSL  A+ + +   +L A +++
Sbjct: 447 KEFLGVANDETDRLTRLVNDVLDLSRLESGRV-VQFEPVSLRPAMEQTLRTYRLNAEDRQ 505

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-------- 735
           + +R   A ++P +L +   + Q+  N++ NA+ F+  GG +++      +         
Sbjct: 506 VDLRLEVAPDLPEVLGNWDLILQVLDNLVGNALKFSRPGGPLMLRAYAWPDSCEVKDQAI 565

Query: 736 ---------------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
                          ++ + + DTG G++  + ++    F ++ N+      GTGLGL +
Sbjct: 566 VGSEGPTCALTSPLPKLRIEIADTGCGISEADQQRIFDRFYRVENAVHTEV-GTGLGLSI 624

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            + +++ +  + ++ S P  GT      PL     
Sbjct: 625 VRGIIEKHGSQVFMVSEPDVGTTFWFDLPLAAADQ 659


>gi|320015940|gb|ADV99511.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Yersinia pestis biovar Medievalis str. Harbin
           35]
          Length = 949

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 95/371 (25%), Positives = 160/371 (43%), Gaps = 29/371 (7%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
             ++E        I+ +   GI+I+   +G  + +N                  +   L 
Sbjct: 351 ALRLEEHEQFNRKIVASAPVGISILRISDGTNILSNELA-------------HNYISLLT 397

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
                     +T I+       ++ +    T     L +  +  +          + D+S
Sbjct: 398 NED----RERITRIICERQANFVDVM----TSNNNNLQISFVHSRYRNEDVAICVLVDVS 449

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
              + +  L      AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R
Sbjct: 450 ARVKMEESLQEMATAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPQGVDR 508

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                  ++ S  L+L I++D+LD SKIES ++ +     S  E ++   +       +K
Sbjct: 509 ---LVTAMNNSSGLLLKIISDILDFSKIESEQLKIEPSEFSTVEVITHITANYLPLVVKK 565

Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
           R+ +      ++PR I  D   ++Q+  N+L+NAI FT +G  II+         +  RV
Sbjct: 566 RLGLYCFIEPDVPRLIEGDPVRLQQVISNLLNNAIKFTDTG-CIILQVRVRD-CYLEFRV 623

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
           RDTGVG+ + E+ +   PF Q+    Q   +GTGLGL + + +V+   G   + S    G
Sbjct: 624 RDTGVGIDSREINQLFDPFFQVGTGVQRHFQGTGLGLAICEKLVNLMDGDVEVISELGMG 683

Query: 802 TLIEIIFPLYD 812
           ++  I  PLY 
Sbjct: 684 SIFAIRIPLYH 694


>gi|163800315|ref|ZP_02194216.1| sensor protein LuxQ [Vibrio sp. AND4]
 gi|159175758|gb|EDP60552.1| sensor protein LuxQ [Vibrio sp. AND4]
          Length = 859

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 82/376 (21%), Positives = 163/376 (43%), Gaps = 23/376 (6%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            ++E +      +       I + + E  ++  N A  K         +  P     +  
Sbjct: 351 EELEAQKKSFRDLFNFALSPIMVWSEESALIQMNPAARKELAIDDGHEIMHPVFQDFKDK 410

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISE 563
               +           +   +           K+    +   ++    S   +   DI+ 
Sbjct: 411 LIPHLKMAAQGATLTGVNVPI---------GNKIYRWNLSPIRVDGDISGIIVQGQDITT 461

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + + + + A++ AEK +  ++DFLA++SHEIRTP+  I+G ++++K+     +     
Sbjct: 462 LIEAEKQSNVARREAEKSAQARADFLAKMSHEIRTPINGILGVAQLLKD----SVNTQEQ 517

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
               + +  SG  +L ++ND+LD S+IE GK N+     S ++ +    ++ +    +K 
Sbjct: 518 KNQIDVLCHSGEHLLAVLNDILDFSRIEQGKFNIQKHSFSFNDTMCTLENIYRPTCIKKG 577

Query: 684 IL--IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-----SNEE 736
           +   I  +   N+  I  D   + QI  N++SNA+ FTPSG  I +           N  
Sbjct: 578 VELVIENNLNPNV-EIFTDQIRLNQILFNLVSNAVKFTPSGS-IWLRAELEQLDGAENSV 635

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           +++ + DTG+G+ + ++++  +PF Q   +      G+GLGL + K ++D   G   + S
Sbjct: 636 LVVTLTDTGIGIESDKIDQMFEPFVQEEATTTREYGGSGLGLTIVKNLIDMLDGDVKVRS 695

Query: 797 TPAKGTLIEIIFPLYD 812
           +   GT   I  P+ D
Sbjct: 696 SKGMGTKFVITLPVRD 711


>gi|300773122|ref|ZP_07082991.1| response regulator/sensor histidine kinase [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300759293|gb|EFK56120.1| response regulator/sensor histidine kinase [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 489

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 82/385 (21%), Positives = 161/385 (41%), Gaps = 31/385 (8%)

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
           Q  +  E    +  + K++  V  L   LE+        N EG I   N    K F Y  
Sbjct: 131 QQALISEIETRKKAEMKLKERVDHLHFTLESLPQIAFTANAEGQIEFVN---EKWFKYS- 186

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI-IIKKL 548
              L          +  ++ + +L  + + +   +LE        +  +    +  I  +
Sbjct: 187 ---LSSEIFPKTHPDDKNIRDEWLLAMATGN---SLELEVRIKEIDADIFRFHLLRIIPI 240

Query: 549 PFSSC---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
                   +  T  DI + KQ + K              K +FL+  SHE++TPLT+I  
Sbjct: 241 REQEIVVKWVGTFTDIDDQKQIEKK--------------KDEFLSIASHELKTPLTSIKA 286

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
           + + +  +      N    +Y + +    + +  ++ DLLDISKI++GK+ ++ +  + +
Sbjct: 287 YIQ-LLERTLNAEQNSATSKYLSTVQNQVSKLNSLIADLLDISKIDNGKLKMNKKLFNFE 345

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725
             +S  +  +        I I          +L D   ++Q+ +N L+NAI ++P   ++
Sbjct: 346 NLLSNVVDTIYHTHENSNIRIEREGDVIDQPVLGDEIRIEQVLINYLTNAIKYSPDSKRV 405

Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
           II T    N ++ + V D G+G+  ++ +     F ++  S  ++ +G G+GL +   ++
Sbjct: 406 IIRTE-QENTQIKVDVTDFGIGIPEHKQKNIFNKFYRVEES-SLKFQGLGIGLYICSEII 463

Query: 786 DANMGKFYIFSTPAKGTLIEIIFPL 810
             + G F I S   +G+      PL
Sbjct: 464 RQHNGTFGIQSQTGQGSTFYFTIPL 488


>gi|170701268|ref|ZP_02892235.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           ambifaria IOP40-10]
 gi|170133827|gb|EDT02188.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           ambifaria IOP40-10]
          Length = 1276

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 129/786 (16%), Positives = 268/786 (34%), Gaps = 55/786 (6%)

Query: 35  ETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGY 94
           E +++  E   +    +       +E  S+      +         R       ID HG 
Sbjct: 52  ELQRAYAELAVNFGELERARDASEREQSSSEIDTQLQRIARITAAVRA------IDGHGG 105

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNT----WYGKTTLW 150
           +   S +L   +G+    +      D      +     + + ++ + T      GK T  
Sbjct: 106 IDAPSADLRTMLGSMNEGVDKRLRGDA----QLVAERQLIERVQARGTTLLGEIGKETER 161

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
                +  V   LAA   Y+R            V  N  D    A    +      L  +
Sbjct: 162 LGADADARVNDALAANTAYNRT-----IHALDQVRTNVKDVTTVASRVDVAPNRYRLAPL 216

Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270
           ++   +      +  +  +P         V+S     A            L     +   
Sbjct: 217 RERMQASIDGARNALAIAAPNLDAATAQGVTSALGRVAADIFDGNDGLVALRAGMFAQPS 276

Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330
               +                      + F          L              +    
Sbjct: 277 VTTRYRAKEDQVLRSLDALDVKLAEIADPFALRIVAARQRLDEAIAFRGRAAR--IASLS 334

Query: 331 IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390
                  +G +     +  ++ + ++ + ++ A      L        +A++  ++    
Sbjct: 335 AAV----NGGINALAFNLRMVAQSETAERLKHADAELHKLAGALAQSASALRDALVTDGQ 390

Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450
                A A +         +  +  +  +  +                +      + E  
Sbjct: 391 GNANRAQAVVALTTELAGAARRIVAVKSDMLSNDVAMQRIVADVDTTANRLAAYTEQEAV 450

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
            + L         GI       +  +   A   +        +           + +   
Sbjct: 451 RVDLQQR------GIV----SDVYRAVTSAFLMIVAVSFLLAIGGFVISHRLGTSIARPL 500

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII-IKKLPFSSCYSLTMHDISEWKQEKN 569
             LT  ++               +    LSLR+    +   ++  +     + E ++   
Sbjct: 501 SSLTRTMA-------------RIRSGSDLSLRMSHKGRDEIAALIAGFNMMLDEIERRDV 547

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
            L  A   AE  +S KSDFLAR+SHEIRTP+  ++G +E+++  R       +  ++ + 
Sbjct: 548 DLQAAIATAEAANSAKSDFLARMSHEIRTPMNGVLGMTELLQRTRLTS----KQRKFVDT 603

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           + RSG  +L I++D+LD SKIE+GK+ L     +L + + + ++L++  A  K + +   
Sbjct: 604 VYRSGQTLLVIIDDILDFSKIEAGKLTLERIDFNLHQLLDDVVALMEPNARRKELELVYQ 663

Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748
            A+++P+ +  D   ++QI  N+L NAI FT  G  + +S  ++ +  ++ ++ D+G+G+
Sbjct: 664 RADSVPQRMRGDPVRLRQILTNLLGNAIKFTEHG-HVGLSAAYSDDGRIVFKIADSGIGI 722

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
                 +  +PF Q  +S   +  GTGLGL +++ + +   G   + STP KG++  +  
Sbjct: 723 APDVAAQLFRPFQQADSSTARKYGGTGLGLVISRQLAEMMGGTLTLDSTPGKGSVFTVTT 782

Query: 809 PLYDTS 814
           P    S
Sbjct: 783 PFEPAS 788


>gi|152968914|ref|YP_001334023.1| phosphate regulon sensor protein [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150953763|gb|ABR75793.1| positive and negative sensor protein for pho regulon [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
          Length = 431

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 73/427 (17%), Positives = 155/427 (36%), Gaps = 37/427 (8%)

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             +L       I     L  + W     L +         +        G+    +  + 
Sbjct: 33  WFLLAAVTGLLIWHFWNLMRLSW----WLWVDRSMTPPPGRGSWEPLLYGLHQMQMRNKK 88

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            +R++   + +  S  E+  D + +   EG I   N    ++      D   +     L 
Sbjct: 89  RRRELGSLIKRFRSGAESLPDAVVLTTEEGAIFWCNGLAQQILNLRWPDDSGQNILNLLR 148

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
                    +   +   D  + L  +   +        L I +        + +   D++
Sbjct: 149 YP------EFANYLKQRDFSKPLNLVLNNARH------LEIRVMPYSDKQ-WLMVARDVT 195

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  Q +                + +F A VSHE+RTPLT + G+ E+++ Q        +
Sbjct: 196 QMHQLEG--------------ARRNFFANVSHELRTPLTVLQGYLEMMQEQVLEGATREK 241

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                + +      +  +V  LL +S+IE+       + + +   +       Q  + EK
Sbjct: 242 A---LHTMREQTQRMEGLVKQLLTLSRIEAAPALAMNDRIDVPMMLRVVEREAQTLSQEK 298

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           +  +  +    + ++L +   ++    N++ NA++ TP G +I +S   T    +   V 
Sbjct: 299 Q-TLIFTVDEQL-KVLGNEEQLRSAISNLVYNAVNHTPPGTEIRVSWQRTPQGAL-FSVE 355

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G G+    + +  + F ++  ++  +  G+GLGL + K  V+ +  +  I ST   GT
Sbjct: 356 DNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHAVNHHDSRLEIDSTVGNGT 415

Query: 803 LIEIIFP 809
               + P
Sbjct: 416 RFSFLLP 422


>gi|162210777|ref|YP_562200.2| hybrid sensory histidine kinase BarA [Shewanella denitrificans
           OS217]
          Length = 950

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 90/245 (36%), Positives = 135/245 (55%), Gaps = 8/245 (3%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  AKK A++ S  KS+FLA +SHE+RTPL  +IGF+  +         +   ++Y   
Sbjct: 306 ELDLAKKRAQEASQIKSEFLANMSHELRTPLNGVIGFARQLIKTPL----HASQLDYIKT 361

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           IDRS   +L I+ND+LD SK+E+GKM L   P SL E V+E I+++   A  K + +   
Sbjct: 362 IDRSATNLLGIINDILDFSKLEAGKMELEKMPFSLRETVAETITIIAPSAQAKGLELVID 421

Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI-IISTTHTSNEEVILR--VRDTG 745
              N+P  +  D   V QI  N++ NAI FT SG  +  +     +++ V LR  V DTG
Sbjct: 422 IDENVPEHVSGDAMRVNQIITNLVGNAIKFTDSGSVVFKVILVAETDDRVTLRCEVIDTG 481

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+ + + E   + FGQ  +S   R  GTGLGL + K +++   G+    S+  KG+   
Sbjct: 482 IGIDDSQQEYLFQAFGQADSSISRRFGGTGLGLVITKRLINKMGGQIGFTSSSEKGSNFW 541

Query: 806 IIFPL 810
            I PL
Sbjct: 542 FILPL 546


>gi|149198482|ref|ZP_01875527.1| hypothetical protein LNTAR_06609 [Lentisphaera araneosa HTCC2155]
 gi|149138488|gb|EDM26896.1| hypothetical protein LNTAR_06609 [Lentisphaera araneosa HTCC2155]
          Length = 591

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 87/257 (33%), Positives = 134/257 (52%), Gaps = 3/257 (1%)

Query: 558 MHD-ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
           + D IS  K  + +L   K  AE  S  KS FLA +SHEIRTPL AI+GF+E++      
Sbjct: 185 LRDEISVRKDAEKELIAMKLRAEDASKAKSQFLANMSHEIRTPLGAIMGFNEILLENSKS 244

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
                 Y  Y NYID S   +L ++N++LDISKIE  K  L  E V L++     +   +
Sbjct: 245 LELPDYYPLYLNYIDNSLQYLLKVINNILDISKIEERKFKLKVEDVDLEKFFKNIVYTYK 304

Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
             A EK+I         I + +  D   ++Q+ +N+L NA  FTP    + ++   T ++
Sbjct: 305 HLAEEKKINFIYKNTELIAKYVKIDPVKLQQVIINLLDNAFKFTPVNKLVEMTVK-TDDQ 363

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
           ++I+ VRD G+G+     E   K F Q+ +S     +GTGLGL ++K  ++   G   + 
Sbjct: 364 KLIILVRDEGIGIPKEYQETIFKVFEQVDDSNTRSYQGTGLGLSISKKFIELMGGIISLE 423

Query: 796 STPAKGTLIEIIFPLYD 812
           S   +G++  I  PL +
Sbjct: 424 SGINQGSMFSINLPLKE 440


>gi|327191566|gb|EGE58578.1| putative two-component sensor histidine kinase protein [Rhizobium
           etli CNPAF512]
          Length = 732

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 71/381 (18%), Positives = 155/381 (40%), Gaps = 24/381 (6%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            +E E ++  +++ +T D + +I+  G I S N A   +FGY  ++ + +   + + +  
Sbjct: 347 NLEAERIRFGALVRSTPDAVIVIDERGTIKSFNPAAESMFGYAPQETIGRNIKMLMPEPY 406

Query: 506 PSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKL--PFSSCYSLTMHDI 561
            S  + YLT        + +   ++  G  K   +  + + I  +    +  +   + DI
Sbjct: 407 HSEHDGYLTHYRQTGEERIIGTTRMVSGRRKNGIVFPIEVSISVVFSGETKTFVGIVRDI 466

Query: 562 SEWKQEKN-------KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
           SE  +++        +L       E+ +    +F    SH+++ PL  +   S  +    
Sbjct: 467 SERARQEERMKTTLAQLEAYTAELERSNHDLDEFAYIASHDLKEPLRGLHNHSRFLLEDY 526

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
              L +       N + R    +  +VNDLL  S++  G+  L  +   +   V + ++ 
Sbjct: 527 EDKLDDDGVRR-LNRLVRLSQRMEKLVNDLLYFSRL--GRQQLAVKRADIGLIVKDVVAT 583

Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII----ISTT 730
           ++L   E+    R      +P ++ D   + ++  N+++NAI +      ++    +   
Sbjct: 584 MELLLEERHA--RVLIDGRLPEVVCDAPRLTEVFRNLITNAIKYNDKPAPLVSIGYLERY 641

Query: 731 HTSNEEV---ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
              +  +   +  VRD G G+     E   + F ++  SQ    +GTG GL   + ++  
Sbjct: 642 VGEDGTIARNVFFVRDNGKGIPREFHEDIFRIFKRLEKSQDSD-DGTGAGLTFVRKIIAR 700

Query: 788 NMGKFYIFSTPAKGTLIEIIF 808
           + G  ++ S    GT      
Sbjct: 701 HNGDIWLESEVGAGTTFYFTL 721



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 44/367 (11%), Positives = 97/367 (26%), Gaps = 36/367 (9%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD-ILHIDPNNHIGDLLKRQNTWYGKT 147
           ID  G +K  +       G    + IG  +  +     H + + ++    +        T
Sbjct: 369 IDERGTIKSFNPAAESMFGYAPQETIGRNIKMLMPEPYHSEHDGYLTHYRQTGEERIIGT 428

Query: 148 TLWPIEGT---NLYVPIDLAALPIY-SRNREFSGFRGFGIVHVNRVDNDPRALGK-RLDK 202
           T   + G     +  PI+++   ++    + F G     IV             K  L +
Sbjct: 429 TRM-VSGRRKNGIVFPIEVSISVVFSGETKTFVG-----IVRDISERARQEERMKTTLAQ 482

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
             ++  E+++ +  +++  Y        P      +    L +Y    DD        L+
Sbjct: 483 LEAYTAELERSNHDLDEFAYIASHDLKEPLRGLHNHSRFLLEDYEDKLDDDGVRRLNRLV 542

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
              +       D    +             Q  + +  +          +      E   
Sbjct: 543 RLSQRMEKLVNDLLYFSRLGR---------QQLAVKRADIGLIVKDVVATMELLLEERHA 593

Query: 323 PETVD-KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
              +D + P            + N    L+T     +D          L+     D    
Sbjct: 594 RVLIDGRLPEVVCDAPRLTEVFRN----LITNAIKYNDKPAPLVSIGYLERYVGEDGTIA 649

Query: 382 KPVMLYRSDRTCIAASARLHTIQW----------NRENSLAMTFIPFEKANQFPENMPQN 431
           + V   R +   I         +           +      +TF+    A    +   ++
Sbjct: 650 RNVFFVRDNGKGIPREFHEDIFRIFKRLEKSQDSDDGTGAGLTFVRKIIARHNGDIWLES 709

Query: 432 GIEPEDV 438
            +     
Sbjct: 710 EVGAGTT 716


>gi|261251133|ref|ZP_05943707.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio orientalis CIP
           102891]
 gi|260938006|gb|EEX93994.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio orientalis CIP
           102891]
          Length = 852

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 81/369 (21%), Positives = 165/369 (44%), Gaps = 22/369 (5%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           +++  +  Q   +   +   + + N EG ++  N +  + F               L ++
Sbjct: 349 KRLNEQEKQFADLFNFSLSPVTLWNVEGQLVRFNPSAERCFKTDKA-------RRLLIES 401

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564
               +           +  T+         ++        I              DI+ +
Sbjct: 402 LQPHIRMCAQGATLTGINTTI--------AKKTFRWNLSPITTDSSVIRIMAQGQDITSF 453

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
            + + +   A++ AE+ +  ++DFLA++SHE+RTPL  I+G S+++K++    + +PR +
Sbjct: 454 IEAEKQSEAAREEAEESARVRADFLAKMSHELRTPLNGILGVSQLLKSK----MDDPRDV 509

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           E+   +  SG  +L ++ND+LD SKIE GK ++      L E  +    + +   + K +
Sbjct: 510 EHMEVLCNSGEHLLAVLNDILDFSKIEHGKFHIEKTAFRLAELTNTVEKIFKPLCDNKGV 569

Query: 685 LIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNE-EVILRV 741
                    +   + +D   + QI  N++SNA+ FT  G  Q++++         + + V
Sbjct: 570 DFSVESNIESDSWVFSDQIRINQILFNLVSNAVKFTHQGQVQVVVNALERDEATWLKVDV 629

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            DTG+G+   +L+   +PF Q  ++      G+GLGL + +++V    G+  I S  A+G
Sbjct: 630 FDTGIGIEKSKLKDIFEPFVQAESTTTREYGGSGLGLAIVRSLVSIMDGEIEIESEVAQG 689

Query: 802 TLIEIIFPL 810
           T   +  P+
Sbjct: 690 THFTVHVPI 698


>gi|303246750|ref|ZP_07333027.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
 gi|302491767|gb|EFL51647.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
          Length = 939

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 94/406 (23%), Positives = 166/406 (40%), Gaps = 19/406 (4%)

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL----CSILEATSDGIAIIN-- 469
                               +       +R+ E    +      +ILE+T++G+  ++  
Sbjct: 260 RRLLARRVEERTAELAKTNDKLTAEVAARREAEDRQQRALALHRAILESTAEGMVCVSWP 319

Query: 470 REGIILSTNRAVSKLFGYPVED--ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
             G +L+ NR   +L+G       +        L  N              +   + LE 
Sbjct: 320 LPGDVLAHNRRFLELWGLAENWAALPESERARLLLDNLADPEAARAGYAALMGDGERLET 379

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
             L       L      I++   +     +  D++E  + +++    K +AE+ S  K  
Sbjct: 380 TVLALRDGRFLERRSGPIRQGRSTIGRVFSYVDVTEEIRRRDRTEQQKTMAEEASKAKGA 439

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           FLA +SHEIRTPL  +IG +E +              ++   I +S   +L +VND+LD 
Sbjct: 440 FLAVMSHEIRTPLNVVIGLTEELLAGE----ATGEQRDHFRIIQQSAAHLLGVVNDVLDF 495

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQ 706
           SKIE+GK+ L     ++ E V+    +    A  K +   T   + +P  +  D   ++Q
Sbjct: 496 SKIEAGKLVLERIDFNVRELVAGVADVFAREARVKGLDFSTRVDDAVPAFLRGDPGRLRQ 555

Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSNE-----EVILRVRDTGVGMTNYELEKAMKPFG 761
           + LN+L NA+ FT SG  + +     ++       + +RV DTG+G+     E   + F 
Sbjct: 556 VLLNLLGNAVKFTESGS-VSLDVAPAASGPPDRVGIAIRVADTGIGIAPDRREGIFEDFQ 614

Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           Q   +   R  GTGLGL ++K +V    G   + + P  G++    
Sbjct: 615 QGAGAIARRFGGTGLGLAISKGIVTRMGGTISVEANPGGGSVFTCT 660


>gi|53715746|ref|YP_101738.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
 gi|60683680|ref|YP_213824.1| two-component sensor histidine kinase [Bacteroides fragilis NCTC
           9343]
 gi|253566441|ref|ZP_04843894.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|265767312|ref|ZP_06094978.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
 gi|52218611|dbj|BAD51204.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
 gi|60495114|emb|CAH09933.1| putative two-component sensor histidine kinase with PAS domain
           [Bacteroides fragilis NCTC 9343]
 gi|251944613|gb|EES85088.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|263252617|gb|EEZ24129.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
 gi|301165192|emb|CBW24762.1| putative two-component sensor histidine kinase with PAS domain
           [Bacteroides fragilis 638R]
          Length = 522

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 95/500 (19%), Positives = 199/500 (39%), Gaps = 23/500 (4%)

Query: 318 GENLTPETVDKCPI--PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
            E  +   +D  P     F ++   +  A+       +  + D I  +         P+ 
Sbjct: 39  RERYSTRILDALPDMLTVFDHNANIVELASSPTTNHVEGTTSDSIINSNVKD---IVPEE 95

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
           +  +    +           A   L            +  +  +       ++ Q     
Sbjct: 96  AYESVRHNMDKVIHTGKSSTAEHSLMLDGVLHHYENRIFPLDDQYLLCMCRDVSQETEMA 155

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR--EGIILSTNRAVSKLFGYPVEDIL 493
           +  +T   + ++      +  IL      + + +   +   L  N+A ++  G  V+  +
Sbjct: 156 KINET--QRSEIVRLNSLMNDILNNIPVYLFVKDTGNDFRYLYWNKAFAEHSGISVQRAV 213

Query: 494 RKPFTVFLEQN-TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
                                 +++ L   + LE      + E + ++    +       
Sbjct: 214 GSTDADIFPDKKDAEHFREDDLKVMKLGRIEYLEN-YTTMSGEVRTVTTMKTVVPSGGQH 272

Query: 553 CYS-LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
            Y      D++E K+ + +L  A+  AE+    KS FLA +SHEIRTPL AI+GFS++I 
Sbjct: 273 PYIIGVSWDVTEIKKTEKELIAARIKAEEADRMKSSFLANMSHEIRTPLNAIVGFSKLII 332

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
                        +YA+ ++ +  ++L++ ND+LD+S +E+G + L + PV L +   + 
Sbjct: 333 E----ADNECEKRQYADIVEHNSTVLLNLFNDILDLSALEAGSLELSYHPVRLKDICLQL 388

Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
              + + + +  + +     ++   I  D   + Q+ +N+++NAI FT  G +I      
Sbjct: 389 YE-LHVKSVKPEVRLVLDEVDSQLCIQGDWERISQVLVNLITNAIKFTSVG-EIHFGFQK 446

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
            ++  V   + DTG G+    +    + FG+I +      +GTGLGL + + +V+   G+
Sbjct: 447 KAD-MVQFYMSDTGKGIPAERVATIFQRFGKIDDF----VQGTGLGLTICRMLVEKMGGR 501

Query: 792 FYIFSTPAKGTLIEIIFPLY 811
            ++ S   +GT+     P+ 
Sbjct: 502 IWVRSKQGEGTVFYFTLPMA 521


>gi|116626863|ref|YP_829019.1| multi-sensor signal transduction histidine kinase [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116230025|gb|ABJ88734.1| multi-sensor signal transduction histidine kinase [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 822

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 72/356 (20%), Positives = 151/356 (42%), Gaps = 18/356 (5%)

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
           L +  DG+ I + +G I   NR+   + G     ++ +     L  +  + +   L    
Sbjct: 485 LRSIEDGLVIADPDGRITFANRSAGAILGATARGLVGQSLAQRLNGSVNAEVLARLVAER 544

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI 577
                +   + +       +L ++               ++ D++               
Sbjct: 545 GHIEHEITIRGSRMRQYTLRLATVSADDSGDGPVLGIVGSLSDVTRQ------------- 591

Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
             +    K+D ++ VSHE+RTPLTAI G +E++      P    R  E    I+     +
Sbjct: 592 -HELQQTKNDVISLVSHEMRTPLTAIQGMTELLAAYDVEP---SRRREMNLAINDEVKRL 647

Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697
             ++ + LDI+++ESG   +    V ++  +   + L++  A +++I +      ++P +
Sbjct: 648 ARMITEYLDITRLESGATQMRMAAVRVESILERILILIEPIAAQRQIQLVRQIPADLPAV 707

Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757
           LAD     +   N+++NA+ ++P+G  + +S     +  + + V D G G+   +L +  
Sbjct: 708 LADPDLFSRAVENLVTNAVKYSPNGTTVTVSARAEED-CLWIDVADQGYGIPETDLSRIF 766

Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
           + F ++P  Q     GTGLGL L + + + + G   + S   KG+   +  P  + 
Sbjct: 767 EKFYRVPRVQDAGVPGTGLGLSLVREIAELHHGSVAVRSEVGKGSTFTLRIPRSEA 822



 Score = 38.1 bits (87), Expect = 5.9,   Method: Composition-based stats.
 Identities = 29/271 (10%), Positives = 68/271 (25%), Gaps = 15/271 (5%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D  G +   +      +G  A  ++G  L     +        +  L+  +     + T 
Sbjct: 496 DPDGRITFANRSAGAILGATARGLVGQSLAQ--RLNGSVNAEVLARLVAERGHIEHEIT- 552

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
             I G+ +       A      + +       GIV           L +  +   S +  
Sbjct: 553 --IRGSRMRQYTLRLATVSADDSGDGP---VLGIVGSLSDVTRQHELQQTKNDVISLVSH 607

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
             +   +  +   ++ +     P  R +  ++   E       + +      L S  +  
Sbjct: 608 EMRTPLTAIQGMTELLAAYDVEPSRRREMNLAINDEVKRLARMITEYLDITRLESGATQ- 666

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
                     +   +  +    L        +    R  P+         +L    V+  
Sbjct: 667 -----MRMAAVRVESILERILILIEPIAAQRQIQLVRQIPADLPAVLADPDLFSRAVENL 721

Query: 330 PI-PFFVYSHGNLFYANPSFLLLTKYKSVDD 359
                    +G     +        +  V D
Sbjct: 722 VTNAVKYSPNGTTVTVSARAEEDCLWIDVAD 752


>gi|2213649|gb|AAC45438.1| bZIP histidine kinase [Pseudomonas putida]
          Length = 978

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 88/374 (23%), Positives = 160/374 (42%), Gaps = 17/374 (4%)

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT---VFLEQNTPS 507
                 I +   + + +++  G +L  N+   +  G  +E+I  KPF     +       
Sbjct: 33  EEHARIIFDGLYEFVGLLDAHGNVLEVNQVALEGGGITLEEIRGKPFWKARWWQISKKTE 92

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM----HDISE 563
                L E  S       +   LG +   +++++   +  +       + +     +I++
Sbjct: 93  ATQKRLVETASSGEFVRCDVEILGKSGGREVIAVDFSLLPICNEEGSIVYLLAEGRNITD 152

Query: 564 WKQEKNKLSHAKKIAEKE-------SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            K+ +  L+   +  E+         + KSDF A+VSHE+RTPL+ I+G  + +     G
Sbjct: 153 KKKAEAMLALKNQELEQSVECIRKLDNAKSDFFAKVSHELRTPLSLILGHWKPLWRAEAG 212

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
                 Y +    I R+   +L  VN LLD++K+++ +M L +   +L +      S  +
Sbjct: 213 RESP--YWKQFEVIQRNAMTLLKQVNTLLDLAKMDARQMGLSYRRANLSQLTRTISSNFE 270

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
             A +K I   T     +     D    ++I LN+LSNA  FTP GG I    + +    
Sbjct: 271 GIAQQKSITFDTKLPVQMVA-EVDCEKYERIILNLLSNAFKFTPDGGLIRCCLSLSRPNY 329

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
            ++ V D+G G+     ++  + F Q+    Q    GTGLGL + K  V+ + G   +  
Sbjct: 330 ALVTVSDSGPGIPPALRKEIFERFHQLSQEGQQATRGTGLGLSIVKEFVELHRGTISVSD 389

Query: 797 TPAKGTLIEIIFPL 810
            P  G L ++  PL
Sbjct: 390 APGGGALFQVKLPL 403



 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 74/438 (16%), Positives = 162/438 (36%), Gaps = 32/438 (7%)

Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR---KMEIEV 451
             SA     + +   S+ +      K      +                ++    +    
Sbjct: 553 PFSAHELRARVSNLVSMKVAGDALRKELSDQGDDIAILTHRLIKSRHRLQQSNIALSASE 612

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
            +  ++ E ++ GI + + E  IL+ N A  ++ GY  +D+           +    +  
Sbjct: 613 ARWKAVYENSAAGIVLTDPENRILNANPAFQRITGYGEKDLEGLSMEQLTPSDESPQIKQ 672

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLS----LRIIIKKLPFSSCYSLTMHDISEWKQE 567
            L  +L     +          K    +     + ++ +++  S      + DI+E KQ 
Sbjct: 673 RLANLLQGGGAE-YSVERSYLCKNGSTIWANASVSLMPQRVGESPVILQIIDDITEKKQA 731

Query: 568 KNKLSHAKKIAEKESSH--KSDFLARVSHEIRTPLTAIIGFSE----VIKNQRFGPLGNP 621
           +  L+  ++     S      +F A ++HEI  PL+AI+  +      + N+   P   P
Sbjct: 732 QENLNQLQQQLVYVSRSATMGEFAAYIAHEINQPLSAIMTNANAGTRWLGNE---PSNIP 788

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
              E    I R  +   +I+  +    K    +     +P+ L   V++   +++  +  
Sbjct: 789 EAKEALARIIRDSDRAAEIIRMVRSFLK----RQETVLKPIDLKALVTDTSLILKAPSQN 844

Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG----GQIIISTTHTSNEE- 736
             + +     + +P I  D   ++Q+ +N+  NAI           Q+ +S +     + 
Sbjct: 845 NSVNLDVVADDELPEIWGDGVQIQQLIINLAMNAIEAISQADCETRQLTLSFSGNDTGDA 904

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           +++ V+DTG G++  ++ +    F           EG G+GL +   + + + GK ++  
Sbjct: 905 LVISVKDTGPGISERQMAQLFNAFYTTKK------EGLGMGLAICLTITEVHNGKIWVEC 958

Query: 797 TPAKGTLIEIIFPLYDTS 814
            PA G    +  P    S
Sbjct: 959 PPAGGACFLVSIPARQGS 976



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/150 (8%), Positives = 44/150 (29%), Gaps = 9/150 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH-IDPNNHIGDLLKRQNT-WYGK 146
            D    +   +    +  G     + G+ +  ++           + +LL+     +  +
Sbjct: 629 TDPENRILNANPAFQRITGYGEKDLEGLSMEQLTPSDESPQIKQRLANLLQGGGAEYSVE 688

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
            +     G+ ++    ++ +P               I+ +     + +   + L++    
Sbjct: 689 RSYLCKNGSTIWANASVSLMPQRVGESPV-------ILQIIDDITEKKQAQENLNQLQQQ 741

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRM 236
           L  + +  +  E   Y       P   +  
Sbjct: 742 LVYVSRSATMGEFAAYIAHEINQPLSAIMT 771



 Score = 42.7 bits (99), Expect = 0.27,   Method: Composition-based stats.
 Identities = 18/185 (9%), Positives = 41/185 (22%), Gaps = 7/185 (3%)

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
           P    E  +         +  +   K+                 S       +      E
Sbjct: 553 PFSAHELRARVSNLVSMKVAGDALRKELSDQGDDIAILTHRLIKSRHRLQQSNIALSASE 612

Query: 320 NLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
                  +       +      +  ANP+F  +T Y   D +E        L     S  
Sbjct: 613 ARWKAVYENSAAGIVLTDPENRILNANPAFQRITGYGEKD-LEGLSM--EQLTPSDESPQ 669

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
              +   L +      +      +      +++           +  E+     I  +  
Sbjct: 670 IKQRLANLLQGGGAEYSVE---RSYLCKNGSTIWANASVSLMPQRVGESPVILQIIDDIT 726

Query: 439 DTRIN 443
           + +  
Sbjct: 727 EKKQA 731



 Score = 41.6 bits (96), Expect = 0.64,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 43/147 (29%), Gaps = 11/147 (7%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMR-----LCDVSDILHIDPNNHIGDLLKR 139
           F   +DAHG + E+++   +  G    ++ G          +S          +      
Sbjct: 46  FVGLLDAHGNVLEVNQVALEGGGITLEEIRGKPFWKARWWQISKKTEATQKRLVETA-SS 104

Query: 140 QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199
                    +    G    + +D + LPI +           G            A+   
Sbjct: 105 GEFVRCDVEILGKSGGREVIAVDFSLLPICNEEGSIVYLLAEG--RNITDKKKAEAM--- 159

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFS 226
           L  K   L +  +    ++  K D F+
Sbjct: 160 LALKNQELEQSVECIRKLDNAKSDFFA 186


>gi|229061214|ref|ZP_04198564.1| hypothetical protein bcere0026_33050 [Bacillus cereus AH603]
 gi|228718085|gb|EEL69725.1| hypothetical protein bcere0026_33050 [Bacillus cereus AH603]
          Length = 510

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 101/530 (19%), Positives = 195/530 (36%), Gaps = 38/530 (7%)

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTK 353
           +S +   + +                +     +  P     +   G + + NPS   +  
Sbjct: 7   SSTQKKRHPNVSGRLRNHIQNRSLAEMYASLFEHNPDSIISLNLEGVILHINPSAERILG 66

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
           Y S + +E     S L       + +    V+ Y  +         + +I       L  
Sbjct: 67  YTSNE-LERKTITSIL-------EAHISDQVLQYIKNTAADNQKEYIVSIYHKDGYLLDA 118

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
                    +         ++P +   RI ++ ++    +L +++ +    +   + EG 
Sbjct: 119 VTKLVPIFVKNRLTGVYAIMKPLEKSERI-EKVLQESEKRLRTLMNSMPAFVIFKDHEGR 177

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQ-NTPSVMNHYLTEILSLDLR--QTLEKITL 530
            L  N      F +       K     ++          +  E+  L  +  Q L     
Sbjct: 178 WLEANDYALSCFNFHNVPYHGKRDNELIQYNEAYRESFLHCEEVDELTWQKGQILHGEEF 237

Query: 531 GSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
              +++  L L I    L           +   D++E K+ +  L  ++K+A        
Sbjct: 238 IIHRDDFDLVLSISKVPLFHPDGSRKGLIVMGRDVTELKETEKLLRKSEKLAVV-----G 292

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
              A ++HEIR PLT++ GF  ++      P  N     Y + +    + +  I +  + 
Sbjct: 293 QLTAGIAHEIRNPLTSLKGFLTLL-----HPEINEENKWYVDVMLSEISQMESITSQFMA 347

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706
           +SK +     L     ++   + E ++ +   A    + I     + I  I  D   +KQ
Sbjct: 348 MSKPQ----VLSIHTCNVQTLIEEVVTFILPTAIMHSVHIIMDHFDYISDIQCDSNQLKQ 403

Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
           + +NIL NAI   P GG I I TT   N+ V +R+ D G G+    + +  +PF      
Sbjct: 404 VLINILKNAIEAMPDGGNIFIQTTSLENDFVSIRIMDEGCGIPEERMARLGEPFY----- 458

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
             ++ +GTGLGL +   ++  + GK +I S    GT ++I  P+  T+ P
Sbjct: 459 -SLKEKGTGLGLMMCYKIIQEHHGKLFISSELNIGTTVDIQLPIA-TAQP 506



 Score = 41.6 bits (96), Expect = 0.66,   Method: Composition-based stats.
 Identities = 21/257 (8%), Positives = 63/257 (24%), Gaps = 16/257 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ++  G +  I+    + +G  + ++    +  + +    D            N      +
Sbjct: 48  LNLEGVILHINPSAERILGYTSNELERKTITSILEAHISDQVLQYIKNTAADNQKEYIVS 107

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           ++  +G    +      +PI+ +NR  +G   + I+           + +  +K+   L 
Sbjct: 108 IYHKDG--YLLDAVTKLVPIFVKNR-LTGV--YAIMKPLEKSERIEKVLQESEKRLRTLM 162

Query: 209 EIKKGHSSVEKEKYDIFSQQSPP-----PHLRMKNKVSSLTEYYAHKDDVLK----TEKY 259
                    +  +                H    +          ++          E  
Sbjct: 163 NSMPAFVIFKDHEGRWLEANDYALSCFNFHNVPYHGKRDNELIQYNEAYRESFLHCEEVD 222

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
            L   +   L  +E     +            L +        +      +     ++  
Sbjct: 223 ELTWQKGQILHGEEFIIHRDDFDLVLSISKVPLFHPDGSRKGLIVMGRDVTELKETEKLL 282

Query: 320 NLTP--ETVDKCPIPFF 334
             +     V +      
Sbjct: 283 RKSEKLAVVGQLTAGIA 299


>gi|307154620|ref|YP_003890004.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306984848|gb|ADN16729.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 708

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 92/591 (15%), Positives = 207/591 (35%), Gaps = 55/591 (9%)

Query: 251 DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310
           +  +++ +    + +++          +     T            + + E L  +N   
Sbjct: 7   EQQVQSAQRRWKSIQQTVQEASNPSPELQAEIIT---ELAIALEELRVATETLQQQNEEL 63

Query: 311 LSAYFDEGE--NLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKS------VDDIE 361
             A  D         +  +  P  + V    G +  AN     L   +         DI 
Sbjct: 64  YLARQDAERLSQHYQDLFEFAPDGYLVTDERGIIHEANHVAASLLNVRKKYLVNKPLDIF 123

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT--IQWNRENSLAMTFIPFE 419
           +A     + ++        +   +L  ++        +     +Q   +  L +      
Sbjct: 124 VAQADKEIFNSYWSQIKQTLDKNLLKINNNNPPKNLIKNWETLLQPRDKEPLPVAISMSI 183

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
            AN    ++    +  +  + +  + K+  +     ++L+AT+D I + N +  I+  NR
Sbjct: 184 SANFEEHSIRLYWLLRDISEAKQAQEKIYEQ----AALLDATTDAILVQNLQDQIVYWNR 239

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
              +L+G+  E+   K   + L   +   +      +   +     E      TK  K +
Sbjct: 240 GAEQLYGWTKEEAHLKNLNLLLSPESLYKLPEIYQNLFKKNR---WEGEIYQLTKSGKEI 296

Query: 540 SLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
            +      +           +   D++  KQ +      K++  +         + +SH+
Sbjct: 297 IVDSRWSLVRDEKNNLKSILIVNTDVTLNKQIEA-----KRLQNQRLEIIGALSSGISHD 351

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           +   LT I+G ++++         +    +    I+ +      ++  +L  S+   G+ 
Sbjct: 352 LNNILTPILGMAQLLVRNL--SHLDETTQQMLKIIEINAQRGAGLLKQILMFSRGVKGRN 409

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715
           ++      +   + E   ++Q     K I+I      +I  I  D+  + Q+ +N+  NA
Sbjct: 410 SILL----VSSLILEIRQMLQEIFP-KTIIIEQDIMPDIWAINGDITQLHQMLMNLCLNA 464

Query: 716 IHFTPSGGQIIISTT----------HTSNE----EVILRVRDTGVGMTNYELEKAMKPFG 761
               P GG++ I+                      V++ V DTG+G+ +   E+  +PF 
Sbjct: 465 RDAMPDGGKLTIAAKNFMIDQAYSNIEPEAKIGPYVVISVLDTGMGIPSEMKERIFEPFF 524

Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
                 +  G+GTGLGL +   +V  + G   + S   KG+  +I  P  +
Sbjct: 525 T----NKEIGKGTGLGLSIVMNIVKNHGGFIKVLSEVGKGSHFKIFLPAVE 571


>gi|126741123|ref|ZP_01756804.1| Hybrid sensory histidine kinase [Roseobacter sp. SK209-2-6]
 gi|126717760|gb|EBA14481.1| Hybrid sensory histidine kinase [Roseobacter sp. SK209-2-6]
          Length = 762

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 83/262 (31%), Positives = 139/262 (53%), Gaps = 8/262 (3%)

Query: 555 SLTMHD-ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
              + D  +E  + ++ L  A K A+  +  KS+FLA +SHEIRTP+  +IG +E+I + 
Sbjct: 209 VGVLEDAFAERNEREHALQEACKAADIANRAKSEFLANMSHEIRTPMNGVIGMAELILDT 268

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
                 +     YA  I +SG+ +L I+ND+L+ SKIE+GK+ L   P +L  A+ + ++
Sbjct: 269 EL----DEDQQMYAETISKSGSALLTIINDILNFSKIEAGKVELDNAPFNLQVAIEDVVT 324

Query: 674 LVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTH 731
           L+   A  K + I   +A ++P     D+  V+Q+  NI+ NAI FT +G   I +S   
Sbjct: 325 LLSPRATMKGVEITLRYAPDLPEFFTGDVGRVRQVVTNIVGNAIKFTSTGYVAIDVSGAK 384

Query: 732 TSNEE-VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
                 + + V DTG+G+    L+     F Q+ ++     EGTGLGL ++  ++    G
Sbjct: 385 GPKGYQLGIEVLDTGIGIPEERLDDIFSAFEQVDSAATRSFEGTGLGLAISSRLLSLMGG 444

Query: 791 KFYIFSTPAKGTLIEIIFPLYD 812
           +  + S   KG++  I  PL +
Sbjct: 445 RVTVKSVAGKGSVFTIRLPLTE 466


>gi|228998390|ref|ZP_04157981.1| hypothetical protein bmyco0003_29520 [Bacillus mycoides Rock3-17]
 gi|228761311|gb|EEM10266.1| hypothetical protein bmyco0003_29520 [Bacillus mycoides Rock3-17]
          Length = 481

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 89/503 (17%), Positives = 186/503 (36%), Gaps = 43/503 (8%)

Query: 321 LTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
           +     +  P     +   G + + NPS   +  Y S +++E     S +       + +
Sbjct: 1   MYASLFEHNPDGIISLNLQGIILHINPSAEKILGYTS-EELERKTITSII-------EAH 52

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
               V+ +  + T       + +I       + +         Q   +     ++P +  
Sbjct: 53  ISDQVLQFIKNTTADNQEEYILSIHHKDGYQIDVVTKLVPIFIQKHLSGVYAIMKPLEKS 112

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
            RI ++ ++    +L +++++    +   + EG  L  N      F +       K  + 
Sbjct: 113 ERI-EKMLKESEKRLRTLMDSMPAFVIFKDHEGRWLEANDYALSCFDFHDVPYHGKKDSE 171

Query: 500 F----------LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
                                 +  + +       + K T     +   + L        
Sbjct: 172 LVQYNEAYREAFLHCEQIDELAWQQKKIIHGEEFIIHKSTSNLILDLSKVPLF---HPDG 228

Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                 +   D++E K+ +  L  ++K+A           A ++HEIR PLTA+ GF  +
Sbjct: 229 SRKGLIVMGRDVTELKKTEKLLRKSEKLAVV-----GQLTAGIAHEIRNPLTALKGFLTL 283

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           ++     P  + +   Y + +    + +  I +  + +SK +     L      +   + 
Sbjct: 284 LQ-----PDISEQNKWYIDVMLSEISQMESITSQFMAMSKPQ----VLSIHSHQIQSLIE 334

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
           E ++ +   A      I     + +P I  D   +KQ+ +N+L NAI   P GG I I T
Sbjct: 335 EVVTFILPTAIMHSTHIIMDHLSTMPEIQCDGNQLKQVFINVLKNAIEAMPRGGNIFIQT 394

Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
                  +++R+ D G G+    + +  +PF        ++ +GTGLGL +   +++ + 
Sbjct: 395 KQVDENFILIRIIDEGCGIPEDRISRLGEPFY------SLKEKGTGLGLMMCYKIIEEHY 448

Query: 790 GKFYIFSTPAKGTLIEIIFPLYD 812
           GK  I S   KGT ++I  P+  
Sbjct: 449 GKLQISSELNKGTTVDIRLPISP 471


>gi|218777866|ref|YP_002429184.1| PAS/PAC sensor signal transduction histidine kinase
            [Desulfatibacillum alkenivorans AK-01]
 gi|218759250|gb|ACL01716.1| PAS/PAC sensor signal transduction histidine kinase
            [Desulfatibacillum alkenivorans AK-01]
          Length = 1132

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 114/832 (13%), Positives = 242/832 (29%), Gaps = 70/832 (8%)

Query: 27   KKKIDNGFE-TEKSKKENPCH------DSFEQSNFTDQNQESVSNTNYLDSENTFVFDPI 79
            K+  D  F+     + ++         ++      +   + S  N    +SE+ +     
Sbjct: 324  KRVEDGAFDVAVPIRAKDEIGKLAWAFNAMAAEITSKVAEMSRLNQGLRESESKYKTLVN 383

Query: 80   PRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR 139
                R  +  D +      +    + +     ++ G    D+  +   +      + +  
Sbjct: 384  NIPQR-IFLKDKNFKYVSCNRNYAQDVNMTEAQIEGKNDFDLFPMEIAEKYRSDDERILS 442

Query: 140  QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199
                      +  +G  +   +    +PI     E SG  G  I              + 
Sbjct: 443  AGESEEIEESYIKDGETMV--VQTVKIPIRDDAGEVSGVLG--IFWDITERRKMEESLRI 498

Query: 200  LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR---MKNKVSSLTEYYAHKDDVLKT 256
                F +            +      +      + R          +  + A  DD    
Sbjct: 499  TRFSFENAPLGIYLIGEGRRILDVNEAAARMLGYTREELASMGTWEVDPFQAKLDDEAAW 558

Query: 257  EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
                     E             +        F   +                       
Sbjct: 559  NIAKAQKEGECFESVHLRQDGSEVPVEVSSSLFE-YEGLRYAVAFIQDITQRKQAEEELR 617

Query: 317  EGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
            +   L    ++        +         N            D +        L    K 
Sbjct: 618  KSRRLLSNILESMDESVATIDQEFVYQLVNRRHEECFDQPRRDVVGRTVW--DLFPGVKE 675

Query: 376  SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
            +        M                 +       L M        +   + +   G+  
Sbjct: 676  TPAWRY---MNRAMQGEM--VGGVEIKVPKLDGTELWMRGSYSPLKDSDGKVIGVVGVGV 730

Query: 436  EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
            +    + ++ ++      L +I+++    +  ++ +G +   N+   ++ G   E+   +
Sbjct: 731  DVTQQKKDEEELRRLRNYLSNIIDSMPSVLVGVDSKGRVTQWNKRAEQVTGIRSENARFQ 790

Query: 496  PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555
            P        +       +   +         K    S +E +   + I            
Sbjct: 791  PLAKVFSGLSIE--MERIQASIRDRQVLHNSKAPSRSQEETRYEDITIYPLVANGVEGAV 848

Query: 556  LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN--Q 613
            + + D++E  + +  +   +K+            A ++HEI  PL  II  + V+++  +
Sbjct: 849  IRVDDVTEQVRLEELMIQNEKML-----SVGGLAAGMAHEINNPLAGIIQTANVMRSRLE 903

Query: 614  RFGPLGNPRYIE--------------------YANYIDRSGNLVLDIVNDLLDISKIESG 653
            +     N R  E                      + ID SG  V +IV ++L  ++  + 
Sbjct: 904  QLELPANIRAAEEAGASMDVIMAYMEKRSIFRMLDAIDESGKRVAEIVKNMLSFARKSNE 963

Query: 654  KMNLHFEPVSLDEAVSEAISL---VQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710
              +LH  PV L + + E  S    ++   + K I I   +  N+P I  +   ++Q+ LN
Sbjct: 964  TFSLH-HPVHLMDKILELASTDYDLKKQQDFKTIKIIKEYEENLPEISCEGTKIQQVLLN 1022

Query: 711  ILSNAIHFTP----SGGQI---IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
            IL N  H       SGG     ++      N  + + ++D G GM    + +  +PF   
Sbjct: 1023 ILRNGAHAMQSLDASGGYTPCFVLRLAREEN-MLRMEIQDNGPGMDKATVSRIFEPFFTT 1081

Query: 764  PNSQQIRGEGTGLGLPLAKAMVDA-NMGKFYIFSTPAKGTLIEIIFPLYDTS 814
                   GEGTGLGL ++  ++   + G   + S+P  G    I  PL   +
Sbjct: 1082 KP----VGEGTGLGLSVSYFIITQNHGGTMDVVSSPGNGANFIIRLPLAHVN 1129



 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 55/466 (11%), Positives = 135/466 (28%), Gaps = 21/466 (4%)

Query: 136 LLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA 195
           ++K Q     +  L   +G+ L +  +L A  I S  R   G     ++       + R 
Sbjct: 192 VMKNQRFVSSQLELIDSDGSLLALFSELFAQ-IESLER-LIGESDATLLRYQTQIAEARE 249

Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK-VSSLTEYYAHKDDVL 254
                 K       + K  S ++     + +              +  L         + 
Sbjct: 250 AFDSAAKSTEMNAVVAKAKSDLDAANVKLENASRSTLTAVFVFLFLVPLLVIIFGIFGLN 309

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH-PSLSA 313
                P+     +    ++    + +    K +        +  + E  S       L+ 
Sbjct: 310 TIILRPISQLMHAMKRVEDGAFDVAVPIRAKDEIGKLAWAFNAMAAEITSKVAEMSRLNQ 369

Query: 314 YFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
              E E+     V+  P   F+   +      N ++           IE       L   
Sbjct: 370 GLRESESKYKTLVNNIPQRIFLKDKNFKYVSCNRNYAQDVNMTEAQ-IEGKNDFD-LFPM 427

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
                  +    +L   +      S  +         ++ +  +     +   E     G
Sbjct: 428 EIAEKYRSDDERILSAGE------SEEIEESYIKDGETMVVQTVKIPIRDDAGEVSGVLG 481

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
           I  +  + R  +  + I         E    GI +I     IL  N A +++ GY  E++
Sbjct: 482 IFWDITERRKMEESLRIT----RFSFENAPLGIYLIGEGRRILDVNEAAARMLGYTREEL 537

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
                  +      + ++      ++   ++     ++   ++   + + +      +  
Sbjct: 538 A--SMGTWEVDPFQAKLDDEAAWNIAKAQKEGECFESVHLRQDGSEVPVEVSSSLFEYEG 595

Query: 553 --CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
                  + DI++ KQ + +L  ++++         + +A +  E 
Sbjct: 596 LRYAVAFIQDITQRKQAEEELRKSRRLLSNILESMDESVATIDQEF 641


>gi|187930210|ref|YP_001900697.1| multi-sensor hybrid histidine kinase [Ralstonia pickettii 12J]
 gi|187727100|gb|ACD28265.1| multi-sensor hybrid histidine kinase [Ralstonia pickettii 12J]
          Length = 652

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 99/490 (20%), Positives = 179/490 (36%), Gaps = 23/490 (4%)

Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGG--LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA- 396
            L  AN            D I          +L    L      + + + R         
Sbjct: 22  RLETANLQADTTLVDNETDFIAQLSARTFDAILADYMLPQFTGAEALDIARRMAPQTPFI 81

Query: 397 -------SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449
                        +         +              +       E       +  +  
Sbjct: 82  FVSGALGEEHAVDMLKRGATDYVIKQRLQRLP---VVLLRALAEAAERRQRIAAEAALRE 138

Query: 450 EVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
                  ++ A  +  +  ++ +GI+ + N A   + GY  EDIL K   +   Q     
Sbjct: 139 AETHFRLLINALKEHAVLSLDPQGIVRTWNAASRSILGYAREDILGKSAEILYPQAAREA 198

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEW 564
              +  ++  +    +L        K+        ++  +   +   +     + D +E 
Sbjct: 199 G-EFQRKLERVRREGSLTDDRWMLRKDGTPFYASSVVTAIHNETGQLVGFSKIIRDSTEE 257

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           +   + L  AK+ AE  +  K  FLA +SHE+RTPLT I+    +++ ++  P      +
Sbjct: 258 RIAADALRRAKEEAETANHAKDHFLAVLSHELRTPLTPILTAVHLLELRQDLP---AYVV 314

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
                + R+  L   +++DLLDI+ I  GK+ + F  V L   +   + + +     KR+
Sbjct: 315 AQLEVVRRNAELEARLIDDLLDITGIARGKLAVSFALVDLYPLLESTLEMSRNDMQAKRL 374

Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744
            ++T F     R+ AD   ++Q+  N++ NA+ FTP GG I +   + S   V + V+D 
Sbjct: 375 SLKTRFEAGRSRLYADGARIQQVIWNLVRNAVKFTPEGGAIGVRVWNPSPSTVAVAVKDN 434

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTL 803
           G+G+    L +    F Q   S   R  G GLGL +A A+V  + G     S    +G  
Sbjct: 435 GIGIEPDALPRIFSAFEQADASITQRFGGLGLGLAIAYALVQKHEGSLIAESAGRHEGAT 494

Query: 804 IEIIFPLYDT 813
             +  PL   
Sbjct: 495 FTLTLPLATE 504



 Score = 55.4 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/257 (10%), Positives = 71/257 (27%), Gaps = 14/257 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK---RQNT 142
             ++D  G ++  +      +G     ++G    ++               L+   R+ +
Sbjct: 155 VLSLDPQGIVRTWNAASRSILGYAREDILGKS-AEILYPQAAREAGEFQRKLERVRREGS 213

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
                 +   +GT  Y    + A  I++   +  GF    I+  +  +       +R  +
Sbjct: 214 LTDDRWMLRKDGTPFYASSVVTA--IHNETGQLVGFSK--IIRDSTEERIAADALRRAKE 269

Query: 203 KFSHLHEIKKGHSSVEKEKYD------IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256
           +    +  K    +V   +        + +         +   V +  E      ++   
Sbjct: 270 EAETANHAKDHFLAVLSHELRTPLTPILTAVHLLELRQDLPAYVVAQLEVVRRNAELEAR 329

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
               LL     +  +      +       +      +N+ +     L  R     S  + 
Sbjct: 330 LIDDLLDITGIARGKLAVSFALVDLYPLLESTLEMSRNDMQAKRLSLKTRFEAGRSRLYA 389

Query: 317 EGENLTPETVDKCPIPF 333
           +G  +     +      
Sbjct: 390 DGARIQQVIWNLVRNAV 406


>gi|70730998|ref|YP_260739.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68345297|gb|AAY92903.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens
           Pf-5]
          Length = 1039

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 100/642 (15%), Positives = 212/642 (33%), Gaps = 34/642 (5%)

Query: 191 NDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK 250
               A+G  L +      E        +  +    S  +      + +  SS     +  
Sbjct: 64  EQQEAVGATLFQGNPSSVETPFTLVCQDLAQCPHQSAAAAGLGRYLADLYSSFWVRSSFP 123

Query: 251 DDVLKTEKY-PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
              L         +    ++  +    T  L          +  ++  ++  ++  ++ P
Sbjct: 124 ASALLVVDAGAGSSFTVPTIGSRWPRLTTPLVLAGLHAVRASATSSDSDAIRWIRLKDFP 183

Query: 310 S--LSAYFDEGENLTPETVDKCPIPFFVYSHGNL-FYANPS----FLLLTKYKSVDDIEI 362
              ++                      +     +  +  P     +        +D + +
Sbjct: 184 QHMIAFTALHNLAPGSGLQSSGTYAACLTYRDRINVFTTPQRRHFYDKFWLQGRLDGLLL 243

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
               + L      +  +      +  +           +   +   +            +
Sbjct: 244 GDEPAPLALHEGANVRSDGLLFRINDASGHWSGYYLLSYRALFLGHSWSLAAIFLLLLLS 303

Query: 423 QFPENMPQNGIEPE-DVDTRINKRKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRA 480
                +     +       +    ++        ++LE T   + +++R +  I+  N  
Sbjct: 304 PLAARVYARWYQRRVIAPAQQAHAELVENHQFSRTLLETTPVALCVLSREDRRIVFANNL 363

Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
             K F       + +             +   +         +         + + +   
Sbjct: 364 ALKWF----TTQVGQSLD---ASGLDPALLERIARAREPGEIENF------QSFDGRSFY 410

Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
           +     +            D+S   Q + +L+ AK+ A+K +  KS FLA +SHEIRTPL
Sbjct: 411 IAFAPTRYRNQDVLICAFADLSARAQMEQQLTQAKQAADKANGAKSVFLATMSHEIRTPL 470

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
             ++G  E++         +    +    I  S  L+L I++D+LDI++IESG+++L  +
Sbjct: 471 YGVLGSLELMGLTDL----DREQRQLLERIQVSSGLLLQIISDILDITRIESGQLSLGDQ 526

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFT 719
                  V    +     A  K +L+ +     +P  +L D   + QI  N++SNA+ FT
Sbjct: 527 LFDPRALVQRCTASFVDSARNKGLLLFSWVDPELPPALLGDPGRISQILTNLISNAVKFT 586

Query: 720 PSGGQIIISTTHTSN--EEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
            SG Q+I+           V+L   V DTG+G+   E ++   PF QI  +      G G
Sbjct: 587 HSG-QVIVRARAEPGSQGRVLLSLQVADTGIGIGKEEQQQLFIPFYQID-AHSHTVHGAG 644

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
           LGL +   +      + ++ S    G+   +   L   S P+
Sbjct: 645 LGLSICAKLAALMGSQIHLTSELGLGSSFSMQLELPVASDPN 686


>gi|323967661|gb|EGB63073.1| hsp90-like protein [Escherichia coli M863]
 gi|327252488|gb|EGE64147.1| signal transduction histidine-protein kinase atoS [Escherichia coli
           STEC_7v]
          Length = 608

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 97/467 (20%), Positives = 200/467 (42%), Gaps = 30/467 (6%)

Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
            +   +   +I      + L +  +         +++  +    I+    +   +    N
Sbjct: 158 SMIPIERNGEILGYIWANELTEDIRRQAWKMDVRIIIVLTAGLLISLLLIVLFSRRLSAN 217

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN--KRKMEIEVMQLCSILEATSDGIAI 467
              +T      A   P  +PQ   E   +   +N   + +         I+E  +DG+  
Sbjct: 218 IDIITDGLATLAQNIPTRLPQLPGEMGQISQSVNNLAQALRETRTLNDLIIENAADGVIA 277

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
           I+R+G + + N A   + GY   +++ +P+++    +     +  L  +        LE 
Sbjct: 278 IDRQGDVTTMNPAAEVITGYQRHELVGQPYSMLF--DNTPFYSPVLDTLEHGTEHVALEI 335

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
              G     + + L +   ++  +        +   D++  K+ + +++ A+++A     
Sbjct: 336 SFPGRE---RTIELSVTTSRIHNTHGEMIGALVIFSDLTARKETQRRMAQAERLAT---- 388

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
              + +A V+HE+R PLTAI G+ ++++ Q   P+    + EY + + +  + +  ++  
Sbjct: 389 -LGELMAGVAHEVRNPLTAIRGYVQILRQQTSDPI----HQEYLSVVLKEIDSINKVIQQ 443

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703
           LL+ S+    +    ++ VSL+  V E + LVQ    + R+   +   N +  I AD   
Sbjct: 444 LLEFSRPRHSQ----WQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSPISADREL 499

Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
           +KQ+ LNIL NA+    + G+I I T   S+ +  + + D G G+     +K   PF   
Sbjct: 500 LKQVLLNILINAVQAISARGKIRIRTWQYSDSQQAISIEDNGSGIDLSLQKKIFDPFFTT 559

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             S      GTGLGL L++ +++A+ G   + S P  G    +I P+
Sbjct: 560 KAS------GTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILPI 600



 Score = 40.4 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 21/273 (7%), Positives = 67/273 (24%), Gaps = 19/273 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147
           ID  G +  ++       G    +++G     +       P  + + D L+         
Sbjct: 278 IDRQGDVTTMNPAAEVITGYQRHELVGQPYSML---FDNTPFYSPVLDTLEHGTEHVALE 334

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
             +P     + + +  +   I++ + E  G     I        + +    + ++  +  
Sbjct: 335 ISFPGRERTIELSVTTS--RIHNTHGEMIGA--LVIFSDLTARKETQRRMAQAERLATL- 389

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
                     E         ++P   +R   ++           + L      + +  + 
Sbjct: 390 ---------GELMAGVAHEVRNPLTAIRGYVQILRQQTSDPIHQEYLSVVLKEIDSINKV 440

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE-NLTPETV 326
                E     +             +         +  R         +    +   E +
Sbjct: 441 IQQLLEFSRPRHSQWQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSPISADRELL 500

Query: 327 DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDD 359
            +  +   + +   +       +   +Y     
Sbjct: 501 KQVLLNILINAVQAISARGKIRIRTWQYSDSQQ 533


>gi|239833142|ref|ZP_04681471.1| histidine kinase [Ochrobactrum intermedium LMG 3301]
 gi|239825409|gb|EEQ96977.1| histidine kinase [Ochrobactrum intermedium LMG 3301]
          Length = 882

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 131/725 (18%), Positives = 254/725 (35%), Gaps = 49/725 (6%)

Query: 109 YAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT--LWPIEGTNLYVPIDLAAL 166
              +++G+   + +           G  L+ Q+    +    L   +  +  + ++    
Sbjct: 172 TRAEVVGLLPDESAAPQDRSAFLAFGRWLRPQSVVALERAIGLLREQARSFDLTVETVNG 231

Query: 167 PIYSRNREFSGFRGFGIVH---------VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSV 217
            +       SG  GF +                           + F  L +        
Sbjct: 232 TLLDVRGRTSG--GFAVARFLSLQGVQAERAALQAQNREFSERIELFRRLLDRIDQPVWA 289

Query: 218 EKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHT 277
                 +    +           S +             ++       E  L EQ     
Sbjct: 290 RDAGGRVEWVNAAYAQAVDMADASQVISEGRELFGAQARQRLERDRFAEPVLQEQLSAVV 349

Query: 278 INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS 337
               +         +   +      +      ++    +       ET+D+      ++ 
Sbjct: 350 HGDRRL---FNVTDVSAETGSIGLGVDLTEVQAVREELNRTLKSHAETLDQLSTAVAIFD 406

Query: 338 HG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA 396
               L + N +F  L    +   +E     + +LD  +       +P      D    A 
Sbjct: 407 PEMKLQFFNQAFAKLWSLDT-AWLESQPSNTLILDRLRSEGKLPEQPEWRKWKDSVLSAY 465

Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
            A         E    M  +P  +  +   N    G      +    K ++E     L  
Sbjct: 466 RAV--------EPQEHMWHLPDTRTMRVVANPHPQGGVTWFFENMTEKFELEGRYNTLIK 517

Query: 457 I----LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNH 511
           +    L+  ++ +A+   +G I  +N + + L+  P+  I+     +   +  +    N 
Sbjct: 518 VQGETLDHLAEAVAVFGSDGRIRLSNPSFADLWALPMPLIVEGTHISSIAKICSERGGNG 577

Query: 512 YLTEILSLDLRQTLEKITLG--STKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN 569
              + +S       ++         ++  + L   +  LP      LT  D+++  + + 
Sbjct: 578 LWDDFVSTVTGFLDKRDGRMGQVELDDGTI-LSFAVVPLPKGQ-TMLTFIDVTDTVRVER 635

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
            L    +  E     K+DF+  VS+E+R+PLT IIGF+E+++   FG L N R IEY ++
Sbjct: 636 ALKEKNEALELADQIKNDFVQHVSYELRSPLTNIIGFTELLQTPAFGSL-NERQIEYLDH 694

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I  S +++L IVND+LD++ +++G M L    VS+ EA+S A + V     +  I +   
Sbjct: 695 ISTSSSVLLTIVNDILDLATVDAGIMELEVGEVSVVEAISAAAARVGERMRDHDIGLDID 754

Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749
            A+++    AD   V+Q+  N+LSNA ++ P G  I +        E++  V D G GM 
Sbjct: 755 IADDVDVFKADANRVRQVLFNLLSNATNYAPEGSSIRLQVA-REGSEIVFAVHDDGPGMP 813

Query: 750 NYELEKAMKPFGQIPN-----SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
              L+   K F   PN        +          + K+ V+ + G   I +   +GT +
Sbjct: 814 GEVLDTVFKRFQSYPNGGRRRGAGLGLA-------IVKSFVELHGGSVDIDTGSGRGTTV 866

Query: 805 EIIFP 809
              FP
Sbjct: 867 ICRFP 871



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 46/380 (12%), Positives = 101/380 (26%), Gaps = 31/380 (8%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            W  DA G ++ ++    + +       +     ++           +      +     
Sbjct: 287 VWARDAGGRVEWVNAAYAQAVDMADASQVISEGREL---FGAQARQRLERDRFAEPVLQE 343

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           + +        L+   D++A          +G  G G+  +  V      L + L     
Sbjct: 344 QLSAVVHGDRRLFNVTDVSAE---------TGSIGLGV-DLTEVQAVREELNRTLKSHAE 393

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQ--------SPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257
            L ++    +  + E    F  Q                 +    L    +      + E
Sbjct: 394 TLDQLSTAVAIFDPEMKLQFFNQAFAKLWSLDTAWLESQPSNTLILDRLRSEGKLPEQPE 453

Query: 258 KYPLLTSEESSLPEQEDFHTIN-LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
                 S  S+    E    +  L      +           ++ + +      L   ++
Sbjct: 454 WRKWKDSVLSAYRAVEPQEHMWHLPDTRTMRVVANPHPQGGVTWFFENMTEKFELEGRYN 513

Query: 317 EGENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
               +  ET+D       V+ S G +  +NPSF  L        +E     S      + 
Sbjct: 514 TLIKVQGETLDHLAEAVAVFGSDGRIRLSNPSFADLWALPMPLIVEGTHISSIAKICSER 573

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
             N       +            R+  ++ +    L+   +P  K               
Sbjct: 574 GGNGLWDD-FVSTVTGFLDKRDGRMGQVELDDGTILSFAVVPLPKG-------QTMLTFI 625

Query: 436 EDVDTRINKRKMEIEVMQLC 455
           +  DT   +R ++ +   L 
Sbjct: 626 DVTDTVRVERALKEKNEALE 645


>gi|153948861|ref|YP_001401729.1| RcsB family transcriptional regulator [Yersinia pseudotuberculosis
           IP 31758]
 gi|152960356|gb|ABS47817.1| sensor kinase protein RcsC [Yersinia pseudotuberculosis IP 31758]
          Length = 949

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 95/371 (25%), Positives = 160/371 (43%), Gaps = 29/371 (7%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
             ++E        I+ +   GI+I+   +G  + +N                  +   L 
Sbjct: 351 ALRLEEHEQFNRKIVASAPVGISILRISDGTNILSNELA-------------HNYISLLT 397

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
                     +T I+       ++ +    T     L +  +  +          + D+S
Sbjct: 398 NED----RERITRIICERQANFVDVM----TSNNNNLQISFVHSRYRNEDVAICVLVDVS 449

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
              + +  L      AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R
Sbjct: 450 ARVKMEESLQEMATAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPQGVDR 508

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                  ++ S  L+L I++D+LD SKIES ++ +     S  E ++   +       +K
Sbjct: 509 ---LVTAMNNSSGLLLKIISDILDFSKIESEQLKIEPSEFSTVEVITHITANYLPLVVKK 565

Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
           R+ +      ++PR I  D   ++Q+  N+L+NAI FT +G  II+         +  RV
Sbjct: 566 RLGLYCFIEPDVPRLIEGDPVRLQQVISNLLNNAIKFTDTG-CIILQVRVRD-CYLEFRV 623

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
           RDTGVG+ + E+ +   PF Q+    Q   +GTGLGL + + +V+   G   + S    G
Sbjct: 624 RDTGVGIDSREINQLFDPFFQVGTGVQRHFQGTGLGLAICEKLVNLMDGDVEVISELGMG 683

Query: 802 TLIEIIFPLYD 812
           ++  I  PLY 
Sbjct: 684 SIFAIRIPLYH 694


>gi|83814296|ref|YP_444970.1| two-component hybrid sensor and regulator [Salinibacter ruber DSM
           13855]
 gi|83755690|gb|ABC43803.1| two-component hybrid sensor and regulator [Salinibacter ruber DSM
           13855]
          Length = 912

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 112/771 (14%), Positives = 231/771 (29%), Gaps = 73/771 (9%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD-ILHIDPNNHIGDLLKRQNTWYGK 146
            +DA      ++++     G     ++G  L DV               +++ +     +
Sbjct: 165 EVDAEWCFTLVNDQAEALYGMKEEHLLGRTLWDVFPRTKGTRFEEEYRRVMRSREPVRFE 224

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                  G   +  I +   P       F                +     +  ++    
Sbjct: 225 E---RFGGMGTWFDIQVYPNPDGGLAFYFD---------DVTKRKEREEQLREREELLRS 272

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
           + E           +  I    S          ++++ +      + D   +   Y    
Sbjct: 273 ITENVSEGIYRSTPEEGIVYANSAFVEMFGYESRDELRAADPSTFYADPAEREALYRQED 332

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
            +      +  F   + + +T       +                 +     +     T 
Sbjct: 333 EQGGLDGVEVQFQRNDGSTFTGLLSTQQVDAPDGNQVYNDGAVTDITERKGRERRLEQTE 392

Query: 324 ETVDKCPIPFFVYS--------HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
                     F+                 NP +     Y   D    +       +    
Sbjct: 393 TLFQNAQDALFLIDVRQKDSAASFTYRRVNPVYERKFGYTEEDVRGRSP------EEVFG 446

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
           ++        L    R                         P        E     G   
Sbjct: 447 AETAEFLEERLQACKRRREPLDYEEKIPLEEGMAYFRTRLAPVIVD---GEVKQIVGTPR 503

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE---GIILSTNRAVSKLFGYP---- 488
           +    +  ++ ++    ++ ++  ATS  +++  R+   G I      + ++F +P    
Sbjct: 504 DITQRKRREQMLKSRRRKIEALYRATSGLLSVETRDAVPGRIAEV---LQEVFDFPLRHV 560

Query: 489 ---------VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
                     ++ + +  +   E     +    +           + + T G   +    
Sbjct: 561 GLVEGEMLVPKETVGEDLSRMPEPKAQPLSEDLVATRAIQAGEAVVVESTGGLENDLDYG 620

Query: 540 SLRIIIKKLPFSSCYSLTMHD---------------------ISEWKQEKNKLSHAKKIA 578
           +L  +           +   +                     +    + + +L  A++ A
Sbjct: 621 TLSTLAGIPIGGHGAVVVGKEAGTFDALDLRLLEVLGGYGTLVLGRLEREERLVQAREEA 680

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
           E+ +  KS  LA +SHE+RTPL ++IG +++++             + A  I RSG  + 
Sbjct: 681 EEAAQLKSAMLANMSHEVRTPLMSMIGSADLLREDLEEAGLEGEPADMAEQIFRSGQRLR 740

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
           + ++ +L++S++ESG   L  +   LD  V E    + L A+EK I +            
Sbjct: 741 ETLDSVLELSRLESGAYTLDDDSAYLDVVVREVAQELNLRAHEKGIQLEVGSPGASVEAG 800

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
            D  +V++I  N++ NAI FTP GG++ +       E  +L V DTGVG+     E    
Sbjct: 801 LDETAVRRIVRNLVENAIKFTPEGGKVQVRVEPEDEETALLAVEDTGVGIAEEAREDIFD 860

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            F Q         EG+GLGL +   +     G   + S    GT   +  P
Sbjct: 861 AFKQESEGLGREYEGSGLGLSIVDRLTTMLGGTIEVESEKGTGTRFAVRLP 911



 Score =  117 bits (293), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 60/570 (10%), Positives = 155/570 (27%), Gaps = 51/570 (8%)

Query: 33  GFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAH 92
           GF    ++       S       +   E+++ T          ++            D  
Sbjct: 4   GFLGRPAETRRREAASDGPQAARNARLEALTETM-----PGVPYEFRVGP-------DGE 51

Query: 93  GYLKEISEELPKTIGNYAF-KMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLW 150
             +  I +   + +G          R  +     H       + + +  ++ W  +    
Sbjct: 52  QSIAFIGDGATELLGLAPESDGFYERFVEHIPESHRGAFLRSVEEAVTTRSHWRHEVPFD 111

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
             +G    + +  +A P      + + FRG  ++++     + R   + + +    + E+
Sbjct: 112 RPDGE--RIWLLGSAEP--DPQEKGALFRGL-LLNITERIEEERRREQVIRRVTDAIVEV 166

Query: 211 KKG---HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
                     ++ +     ++       + +           ++          +  EE 
Sbjct: 167 DAEWCFTLVNDQAEALYGMKEEHLLGRTLWDVFPRTKGTRFEEEYRRVMRSREPVRFEER 226

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
                      ++  Y           +     +    +            EN++     
Sbjct: 227 FGGM---GTWFDIQVYPNPDGGLAFYFDDVTKRKEREEQLREREELLRSITENVSEGIYR 283

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
             P          + YAN +F+ +  Y+S D++  A   ST    P      A +  +  
Sbjct: 284 STP-------EEGIVYANSAFVEMFGYESRDELRAADP-STFYADP------AEREALYR 329

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
           + D         +   + +      +     +        +  +G   +  + +  +R++
Sbjct: 330 QEDEQGGLDGVEVQFQRNDGSTFTGL-LSTQQVDAPDGNQVYNDGAVTDITERKGRERRL 388

Query: 448 EIEVMQLCSILEATSDGIAIIN-------REGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           E       ++ +   D + +I+               N    + FGY  ED+  +     
Sbjct: 389 EQTE----TLFQNAQDALFLIDVRQKDSAASFTYRRVNPVYERKFGYTEEDVRGRSPEEV 444

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
               T   +   L            E+            +    +           T  D
Sbjct: 445 FGAETAEFLEERLQACKRRREPLDYEEKIPLEEGMAYFRTRLAPVIVDGEVKQIVGTPRD 504

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
           I++ K+ +  L   ++  E      S  L+
Sbjct: 505 ITQRKRREQMLKSRRRKIEALYRATSGLLS 534



 Score = 38.9 bits (89), Expect = 3.4,   Method: Composition-based stats.
 Identities = 23/379 (6%), Positives = 81/379 (21%), Gaps = 25/379 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            +       +   +    +  G  +   +             +         ++      
Sbjct: 281 IYRSTPEEGIVYANSAFVEMFGYESRDELRAADPSTFYADPAEREALYRQEDEQGGLDGV 340

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +      +G+       L+   + + +         G V             ++ +  F 
Sbjct: 341 EVQFQRNDGSTFTGL--LSTQQVDAPDGN--QVYNDGAVTDITERKGRERRLEQTETLFQ 396

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLR-----MKNKVSSLTEYYAHKDDVLKTEKYP 260
           +  +        +K+    F+ +   P         +  V   +       +  +  +  
Sbjct: 397 NAQDALFLIDVRQKDSAASFTYRRVNPVYERKFGYTEEDVRGRSPEEVFGAETAEFLEER 456

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE--- 317
           L   +    P   +            +          E  + +      +     ++   
Sbjct: 457 LQACKRRREPLDYEEKIPLEEGMAYFRTRLAPVIVDGEVKQIVGTPRDITQRKRREQMLK 516

Query: 318 GENLTPETVDKCPIPFFVYSH-----GNLFYANPSF----LLLTKYKSVDDI---EIAGG 365
                 E + +               G +           L        + +   E  G 
Sbjct: 517 SRRRKIEALYRATSGLLSVETRDAVPGRIAEVLQEVFDFPLRHVGLVEGEMLVPKETVGE 576

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
             + +  PK    +              +   +    ++ + +     T           
Sbjct: 577 DLSRMPEPKAQPLSEDLVATRAIQAGEAVVVEST-GGLENDLDYGTLSTLAGIPIGGHGA 635

Query: 426 ENMPQNGIEPEDVDTRINK 444
             + +     + +D R+ +
Sbjct: 636 VVVGKEAGTFDALDLRLLE 654


>gi|320353481|ref|YP_004194820.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfobulbus propionicus DSM 2032]
 gi|320121983|gb|ADW17529.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfobulbus propionicus DSM 2032]
          Length = 830

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 100/668 (14%), Positives = 197/668 (29%), Gaps = 66/668 (9%)

Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSV------EKEKYDIFSQ 227
              G  G  ++ V+R      A  +R         +     S         +    +  +
Sbjct: 56  ALVGATGVLLLFVSRKTIRRLATSRRPRADNGRYLDSIFRASPTGIGVVSNRVILTVNDR 115

Query: 228 QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT--SEESSLPEQEDFHTINLNQYTK 285
                    +  +   T  +   D   +          S+      +  +   N      
Sbjct: 116 LCAMTGYSREELIGRSTRIFYPSDAEYQAVGSEKYEQISQTGIGTVETRWRRKNGTLLDI 175

Query: 286 KQYFGTLQNNS---KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNL 341
                 +  +      +F  L             E E+     +D       +    G +
Sbjct: 176 LLSSSPILADRLAEGVTFTALDITALKQTERSLRENEHYYRTLIDLAVDGILLGTREGVI 235

Query: 342 FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401
             +N     +   +  + +              L+++     ++            +   
Sbjct: 236 IDSNNQMCAMLGMER-EALIGRHVSELPFTEASLAESPFRFDLLR-----QGQVVLSERV 289

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
            ++ +            E   +   N     I  +    +  +  +E    +L   +E  
Sbjct: 290 LVRPDGRQLF------VEMRTKMMPNGTYQSIYRDISQRKQAEADLE----RLRVAIEQA 339

Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
            + + I + EG I   N A  ++ GY V +++ +   +             L E +    
Sbjct: 340 GEVVVITDVEGAIQYANPAFVRVTGYAVSEVVGQNPRILKSDAHDQAFYKTLWETIVGGR 399

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKI 577
             + +   +   K+  L +    I  +         +     DI+   + + +   A+K+
Sbjct: 400 TWSGQ--LINKRKDGTLYTEEATISPVFDDHGAIVNFVAIKRDITAQLKLEEQYLQAQKM 457

Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
                         V+H+    L  IIG+ E+   +           E    I  + N  
Sbjct: 458 -----ESVGRLTGGVAHDFNNLLAVIIGYCEMALQK---TADRHAVHEDLRNIHLAANRS 509

Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697
            DIV  LL  S+    K  +  + + L+E V   + +++     + I +  S    +P I
Sbjct: 510 ADIVRQLLAFSR----KQPIDPKILDLNEVVEGMLPMLRRLI-GEDIELIWSPQAGLPPI 564

Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT--------------SNEEVILRVRD 743
             D   + QI  N+  NA       G I + T                   + V+L V D
Sbjct: 565 NIDPAQIDQILANLCVNARDAIRGTGTITLRTATIVADAAFRAAHPEAMERDYVVLSVAD 624

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
            G GM    L K  +PF     +      GTGLGL     +V  N       S P +GT 
Sbjct: 625 DGCGMEPELLGKVFEPFFTTKGAL-----GTGLGLATVYGIVQQNQALIATDSEPGRGTT 679

Query: 804 IEIIFPLY 811
             +  P++
Sbjct: 680 FSVYLPVH 687



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/365 (10%), Positives = 97/365 (26%), Gaps = 21/365 (5%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN---HIGDLLKRQNTWYGKTTLWP 151
           +  +++ L    G    ++IG     +      +         + + +      +T    
Sbjct: 109 ILTVNDRLCAMTGYSREELIGRS-TRIFYPSDAEYQAVGSEKYEQISQTGIGTVETRWRR 167

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
             GT   + I L++ PI   +R   G                    +  +  +  L ++ 
Sbjct: 168 KNGTL--LDILLSSSPIL-ADRLAEGVTF--TALDITALKQTERSLRENEHYYRTLIDLA 222

Query: 212 -KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270
             G     +E   I S       L M+ +                  + P     +    
Sbjct: 223 VDGILLGTREGVIIDSNNQMCAMLGMEREALIGRHVSELPFTEASLAESPFR--FDLLRQ 280

Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330
            Q       L +   +Q F  ++     +  Y S     S     +         +++  
Sbjct: 281 GQVVLSERVLVRPDGRQLFVEMRTKMMPNGTYQSIYRDISQRKQAEADLERLRVAIEQAG 340

Query: 331 IPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389
               +    G + YANP+F+ +T Y   + +         +      D    K +     
Sbjct: 341 EVVVITDVEGAIQYANPAFVRVTGYAVSEVVGQNP----RILKSDAHDQAFYKTLWETIV 396

Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT-RINKRKME 448
                +                          +     +    I+ +     ++ ++ ++
Sbjct: 397 GGRTWSGQLINKR---KDGTLYTEEATISPVFDDHGAIVNFVAIKRDITAQLKLEEQYLQ 453

Query: 449 IEVMQ 453
            + M+
Sbjct: 454 AQKME 458



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/208 (10%), Positives = 43/208 (20%), Gaps = 5/208 (2%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147
            D  G ++  +    +  G    +++G     +    H       + + +    TW G+ 
Sbjct: 346 TDVEGAIQYANPAFVRVTGYAVSEVVGQNPRILKSDAHDQAFYKTLWETIVGGRTWSGQL 405

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                +GT       ++  P++  +     F    I               +  K  S  
Sbjct: 406 INKRKDGTLYTEEATIS--PVFDDHGAIVNF--VAIKRDITAQLKLEEQYLQAQKMESVG 461

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
                           I                        H       +    L +   
Sbjct: 462 RLTGGVAHDFNNLLAVIIGYCEMALQKTADRHAVHEDLRNIHLAANRSADIVRQLLAFSR 521

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNN 295
             P       +N            L   
Sbjct: 522 KQPIDPKILDLNEVVEGMLPMLRRLIGE 549



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/306 (11%), Positives = 88/306 (28%), Gaps = 17/306 (5%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQNTWYGKTTL 149
             G + + + ++   +G     +IG  + ++         +    DLL++      +  L
Sbjct: 231 REGVIIDSNNQMCAMLGMEREALIGRHVSELPFTEASLAESPFRFDLLRQGQVVLSERVL 290

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
              +G  L+V +    +P  +            I           A  +RL        E
Sbjct: 291 VRPDGRQLFVEMRTKMMPNGTYQ---------SIYRDISQRKQAEADLERLRVAIEQAGE 341

Query: 210 IK--KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
           +          +     F + +      +  +   + +  AH     KT           
Sbjct: 342 VVVITDVEGAIQYANPAFVRVTGYAVSEVVGQNPRILKSDAHDQAFYKTLWE--TIVGGR 399

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP--ET 325
           +   Q      +   YT++     + ++      +++ +   +     +E        E+
Sbjct: 400 TWSGQLINKRKDGTLYTEEATISPVFDDHGAIVNFVAIKRDITAQLKLEEQYLQAQKMES 459

Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
           V +       +   NL      +  +   K+ D   +   L  +  A   S +   + + 
Sbjct: 460 VGRLTGGVA-HDFNNLLAVIIGYCEMALQKTADRHAVHEDLRNIHLAANRSADIVRQLLA 518

Query: 386 LYRSDR 391
             R   
Sbjct: 519 FSRKQP 524


>gi|315186291|gb|EFU20052.1| multi-sensor signal transduction histidine kinase [Spirochaeta
           thermophila DSM 6578]
          Length = 466

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 74/394 (18%), Positives = 150/394 (38%), Gaps = 25/394 (6%)

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
                         +  +      T    + +  E     ++L    +GI + +    I 
Sbjct: 97  RALTNPFSRALQPLEEALLHTLGQTHTRLQDLTAESHLYHTVLTHMEEGIVVTDGRLRIT 156

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
             N    ++   P E           +    + +  ++   LS  +   L          
Sbjct: 157 YANPRALEILPLPPE----HRLKPLPQFLRSTSLLEHIHRTLSSGIP--LTHTLTTPPPS 210

Query: 536 EKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
            + + L +I      +    L   DI+  ++ +                + DF++ VSHE
Sbjct: 211 SRTIRLHLIPLPPSPAERLLLVASDITRLERLE--------------QIRRDFVSSVSHE 256

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           ++TP+T ++G+ E +K+    P        +        + +  I+ DLL +S+IE  + 
Sbjct: 257 LKTPITTVLGYLETLKD--LPPDDEATRTRFLETALSHTHRLHQIIEDLLLLSRIEQAEA 314

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715
            +  E   L   +  A+ L++     +   +      ++  +  +   + Q   N++ NA
Sbjct: 315 PVPLERAPLAPLIRRAMELLR-QTRGETHPLTLEGPEDL-ALPLNPGLMVQALYNLIHNA 372

Query: 716 IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           +  TP G  +++    T    V+++V D G G+    L +  + F ++  S+     GTG
Sbjct: 373 VTHTPPGTPVVVRWRGT-GSSVLIQVEDRGPGIPPEALPRIFERFYRVDASRARSTGGTG 431

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           LGL + K +V A+ G+  + STP +GT   I  P
Sbjct: 432 LGLSIVKHIVQAHRGEVSVASTPGEGTTFTIRLP 465


>gi|260771912|ref|ZP_05880830.1| BarA sensory histidine kinase [Vibrio metschnikovii CIP 69.14]
 gi|260613204|gb|EEX38405.1| BarA sensory histidine kinase [Vibrio metschnikovii CIP 69.14]
          Length = 929

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 87/340 (25%), Positives = 156/340 (45%), Gaps = 17/340 (5%)

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
           F   +   + +P T        ++++      L + +   +        K    +++ + 
Sbjct: 192 FAVRLMHDVTRPITHM-----KNMVDRIRRGHLDVRIEGKMHGELDSLRKGINAMAVSLS 246

Query: 545 IKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
              +           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTPL
Sbjct: 247 EYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARIKSEFLANMSHELRTPL 306

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
             +IGF+  +   +          +Y   I++S N +L I+ND+LD SK+E+GK+ L   
Sbjct: 307 NGVIGFTRQMLKTQLTN----SQTDYLQTIEKSANNLLTIINDILDFSKLEAGKLALENI 362

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFT 719
           P    E + E ++L    A+EK + I       IP  ++ D   ++Q+  N++ N+I FT
Sbjct: 363 PFEFQETLEEVVNLQATSAHEKGLEITLKVDPKIPLGLVGDPLRIQQVLTNLVGNSIKFT 422

Query: 720 PSGGQ-IIISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
             G   I +      ++ V L+  VRDTG+G++  +  +  + F Q   S   R  GTGL
Sbjct: 423 ERGNIDISVEMRSQRDDMVELQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGL 482

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           GL + + +V    G+  + S   +G+       L  T+ P
Sbjct: 483 GLVITQKLVGQMGGEISLTSRLHQGSTFWFTLRLPTTTMP 522


>gi|228906741|ref|ZP_04070613.1| hypothetical protein bthur0013_9180 [Bacillus thuringiensis IBL
           200]
 gi|228852918|gb|EEM97700.1| hypothetical protein bthur0013_9180 [Bacillus thuringiensis IBL
           200]
          Length = 896

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 78/341 (22%), Positives = 149/341 (43%), Gaps = 24/341 (7%)

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            +D++++            +    +  +L      T E        + +   L++  ++L
Sbjct: 395 HQDLIQQTIDNLGLTIHSIIGRMRIQTLLHESQAMTEELQVQSEELQTQAEELQMQAEEL 454

Query: 549 PFSSCYSLTMHDISEWKQEK-----NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
             ++    +  + +E K        ++L        + S +KS+FLA +SHE+RTPL +I
Sbjct: 455 RTTNEQLESRTEEAEQKTADLQITKSELEEKASELLRSSKYKSEFLANMSHELRTPLNSI 514

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +  SE+++      L +    E A  I  SG  +L ++ND+LD+SK+E+GK+++ FE  +
Sbjct: 515 LLLSEMLRENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDIIFEATN 573

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSG 722
           + +  +         A +K +      ++ IP +   D + ++QI  N+LSNA  FT  G
Sbjct: 574 ISDMAANMHQNFLHIAAQKNVEFTIEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKG 633

Query: 723 GQIIISTTHTS--------------NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
               +S                    E + + V+DTG+G+   + +   + F Q   +  
Sbjct: 634 S---VSLHFNPIETNNLSHDMQSISKEWITISVKDTGIGIAKEQHQLIFEAFQQADGATI 690

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            +  GTGLGL + K       G   + S   +G+   +  P
Sbjct: 691 RKYGGTGLGLSICKEFARLLGGWITLESNLGEGSTFTVYIP 731


>gi|228933922|ref|ZP_04096765.1| hypothetical protein bthur0009_23820 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228825618|gb|EEM71408.1| hypothetical protein bthur0009_23820 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
          Length = 590

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 89/508 (17%), Positives = 177/508 (34%), Gaps = 41/508 (8%)

Query: 314 YFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                E      +   P+    +  +G+    N    ++T Y + + I     L  L   
Sbjct: 102 LLTRKEEELHTILQNMPVMVDALDYNGDFVLWNRECEIVTGYTAEEVIGNPDALQLLYPD 161

Query: 373 PKLSDNNAIKPVML----YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
                    K +         +      +  + TI W+                      
Sbjct: 162 HNYRHEIQKKFLTRGKNFRDWEMRLTCKNGEIKTIMWSN-----------ISEQFPVSGF 210

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
               +  +    +  + K++ +  +L  I +A  D   +   +G I+         F  P
Sbjct: 211 SYWAVGVDITHLKAIEEKLKQQTSELELIFQALPDLCFLTEDDGTIIDYKAGSPTKFYVP 270

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            E  + K F   L  +    +   + ++        +E     +   +           L
Sbjct: 271 AEAFMGKKFYEVLPSSVAQKLQEAICQVKEKGTNVIVEYPLTINESIDFF---EARCLPL 327

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                  + + DI+E K+ +  L+ +  +A           A V+HE+R PLT I GF +
Sbjct: 328 LHDK-IMIIVRDITERKKTEELLNKSDTLA-----AIGQLAAGVAHEVRNPLTVIKGFIQ 381

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
                    +      +Y + +      +  I+ + L I+K +     +  E  ++ +  
Sbjct: 382 ------LFQINKEDQEKYFDLMLSEIERIEAILQEFLSIAKTD----EISTEKKNIYQIF 431

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
              +SL+   A    I +     +    I      +KQ+ +NIL N+I   P GG+I I 
Sbjct: 432 KNVVSLINTKAIMTNIQVELYTDSKDIIIECSENQLKQVFINILQNSIEAMPDGGRISIH 491

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                 + +I+ V D G+G+    +++  +PF         + +GTG+GL L+  +++++
Sbjct: 492 IKEIGKDGIIISVIDKGIGIPEERIKRLGEPFY------STKEKGTGIGLMLSYKIIESH 545

Query: 789 MGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
            G   I S    GT + I  P   +  P
Sbjct: 546 QGNISIMSEVGVGTTVTIYLPKIQSKKP 573


>gi|228915253|ref|ZP_04078847.1| hypothetical protein bthur0012_24730 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|229091649|ref|ZP_04222850.1| hypothetical protein bcere0021_24540 [Bacillus cereus Rock3-42]
 gi|229184867|ref|ZP_04312058.1| hypothetical protein bcere0004_24250 [Bacillus cereus BGSC 6E1]
 gi|228598520|gb|EEK56149.1| hypothetical protein bcere0004_24250 [Bacillus cereus BGSC 6E1]
 gi|228691594|gb|EEL45346.1| hypothetical protein bcere0021_24540 [Bacillus cereus Rock3-42]
 gi|228844370|gb|EEM89427.1| hypothetical protein bthur0012_24730 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 579

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 89/508 (17%), Positives = 177/508 (34%), Gaps = 41/508 (8%)

Query: 314 YFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                E      +   P+    +  +G+    N    ++T Y + + I     L  L   
Sbjct: 91  LLTRKEEELHTILQNMPVMVDALDYNGDFVLWNRECEIVTGYTAEEVIGNPDALQLLYPD 150

Query: 373 PKLSDNNAIKPVML----YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
                    K +         +      +  + TI W+                      
Sbjct: 151 HNYRHEIQKKFLTRGKNFRDWEMRLTCKNGEIKTIMWSN-----------ISEQFPVSGF 199

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
               +  +    +  + K++ +  +L  I +A  D   +   +G I+         F  P
Sbjct: 200 SYWAVGVDITHLKAIEEKLKQQTSELELIFQALPDLCFLTEDDGTIIDYKAGSPTKFYVP 259

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            E  + K F   L  +    +   + ++        +E     +   +           L
Sbjct: 260 AEAFMGKKFYEVLPSSVAQKLQEAICQVKEKGTNVIVEYPLTINESIDFF---EARCLPL 316

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                  + + DI+E K+ +  L+ +  +A           A V+HE+R PLT I GF +
Sbjct: 317 LHDK-IMIIVRDITERKKTEELLNKSDTLA-----AIGQLAAGVAHEVRNPLTVIKGFIQ 370

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
                    +      +Y + +      +  I+ + L I+K +     +  E  ++ +  
Sbjct: 371 ------LFQINKEDQEKYFDLMLSEIERIEAILQEFLSIAKTD----EISTEKKNIYQIF 420

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
              +SL+   A    I +     +    I      +KQ+ +NIL N+I   P GG+I I 
Sbjct: 421 KNVVSLINTKAIMTNIQVELYTDSKDIIIECSENQLKQVFINILQNSIEAMPDGGRISIH 480

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                 + +I+ V D G+G+    +++  +PF         + +GTG+GL L+  +++++
Sbjct: 481 IKEIGKDGIIISVIDKGIGIPEERIKRLGEPFY------STKEKGTGIGLMLSYKIIESH 534

Query: 789 MGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
            G   I S    GT + I  P   +  P
Sbjct: 535 QGNISIMSEVGVGTTVTIYLPKIQSKKP 562


>gi|237808812|ref|YP_002893252.1| histidine kinase [Tolumonas auensis DSM 9187]
 gi|237501073|gb|ACQ93666.1| histidine kinase [Tolumonas auensis DSM 9187]
          Length = 432

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 74/410 (18%), Positives = 153/410 (37%), Gaps = 30/410 (7%)

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459
            +  Q   ++ L                +  NGI       R  +R++   + +     E
Sbjct: 46  FYRYQKRLQDWLWNDRSLIPPQGPGTWELIFNGIYRLQQRHRARRRELASVIRRFREGAE 105

Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL 519
           A  D   +   +G I+  NR   +  G+   +   +  +  +                 L
Sbjct: 106 ALPDAAVVCRNDGSIIWCNRLAWQCLGFRWPEDAGQNISNLIRNPAFVSFLQLRDFSEPL 165

Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579
            +   +         ++K+L  R++         + L + D++  K  +           
Sbjct: 166 VMPSPVN--------DDKILEARVMPY---AEDQFMLVVRDVTHIKSIE----------- 203

Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639
              + + +F+A VSHE+RTPLT + G+ E+++++   P    R+ +    +      +  
Sbjct: 204 ---NMRKNFVANVSHELRTPLTVLKGYLEMLEDELPPP---ARWKKMQQVMLEQTMRMDS 257

Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA 699
           +V+ LL +S+IE          V +   +       +  +   R  I       + +I  
Sbjct: 258 LVDQLLTLSRIEVATDIDRNRIVDVPRMLLMLQHEAKALSGSLRHEIVFQVDPEL-KIYG 316

Query: 700 DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKP 759
           D   ++    N+++NAI +TP+G +I +        +    V D G G+    L +    
Sbjct: 317 DEDQLRSAMTNLVNNAIKYTPAGRKITVDWR-RDGSQARFAVTDEGEGIALEHLGRLTDR 375

Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           F ++  ++  +  G+GLGL + K  +  +     + STP KG+      P
Sbjct: 376 FYRVDKARSRQTGGSGLGLAIVKHALSHHDSMLNVDSTPGKGSTFSFRIP 425


>gi|257059363|ref|YP_003137251.1| Hpt sensor hybrid histidine kinase [Cyanothece sp. PCC 8802]
 gi|256589529|gb|ACV00416.1| Hpt sensor hybrid histidine kinase [Cyanothece sp. PCC 8802]
          Length = 925

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 74/256 (28%), Positives = 135/256 (52%), Gaps = 17/256 (6%)

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           K+ +++++  K   ++ +  K++F+A + HEIRTPL A+ G + ++ +       NP+  
Sbjct: 243 KELESQIAKQKT-IKEVNQAKNEFMAMIGHEIRTPLNAVTGMTGLLLDTPL----NPQQE 297

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           E+ N I  SG  +L ++N++LD SKIE+ K+ L  +P  L   + E + L    A++K++
Sbjct: 298 EFVNIIRSSGENLLTMINNILDFSKIEAQKLELEEQPFELGLCIEEVLRLFVPQASQKQL 357

Query: 685 LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNE------- 735
            +      N P  I+ D   ++QI  N+L NA+ FT  G  ++ +S     N        
Sbjct: 358 ELAYLIEPNTPSAIVGDSTRLRQILSNLLGNAVKFTEKGEVVVYVSAQPLPNSDRTDKTL 417

Query: 736 ---EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
              E+   V+DTG+G+   + ++  +PF Q+  S   +  GTGLGL +++ + +   GK 
Sbjct: 418 ANYELRFAVKDTGIGIAPQDCDRLFQPFSQVDASTTRKYGGTGLGLVISQRLSELMGGKM 477

Query: 793 YIFSTPAKGTLIEIIF 808
           ++ ST  KG+      
Sbjct: 478 WVHSTEGKGSTFYFTI 493


>gi|49479191|ref|YP_036745.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|118478020|ref|YP_895171.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           thuringiensis str. Al Hakam]
 gi|196032103|ref|ZP_03099517.1| sensor histidine kinase [Bacillus cereus W]
 gi|196040421|ref|ZP_03107722.1| sensor histidine kinase [Bacillus cereus NVH0597-99]
 gi|196043690|ref|ZP_03110928.1| sensor histidine kinase [Bacillus cereus 03BB108]
 gi|225864620|ref|YP_002749998.1| sensor histidine kinase [Bacillus cereus 03BB102]
 gi|301054173|ref|YP_003792384.1| sensor histidine kinase [Bacillus anthracis CI]
 gi|49330747|gb|AAT61393.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|118417245|gb|ABK85664.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           thuringiensis str. Al Hakam]
 gi|195994854|gb|EDX58808.1| sensor histidine kinase [Bacillus cereus W]
 gi|196025999|gb|EDX64668.1| sensor histidine kinase [Bacillus cereus 03BB108]
 gi|196028906|gb|EDX67512.1| sensor histidine kinase [Bacillus cereus NVH0597-99]
 gi|225787029|gb|ACO27246.1| sensor histidine kinase [Bacillus cereus 03BB102]
 gi|300376342|gb|ADK05246.1| sensor histidine kinase [Bacillus cereus biovar anthracis str. CI]
          Length = 595

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 89/508 (17%), Positives = 177/508 (34%), Gaps = 41/508 (8%)

Query: 314 YFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                E      +   P+    +  +G+    N    ++T Y + + I     L  L   
Sbjct: 107 LLTRKEEELHTILQNMPVMVDALDYNGDFVLWNRECEIVTGYTAEEVIGNPDALQLLYPD 166

Query: 373 PKLSDNNAIKPVML----YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
                    K +         +      +  + TI W+                      
Sbjct: 167 HNYRHEIQKKFLTRGKNFRDWEMRLTCKNGEIKTIMWSN-----------ISEQFPVSGF 215

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
               +  +    +  + K++ +  +L  I +A  D   +   +G I+         F  P
Sbjct: 216 SYWAVGVDITHLKAIEEKLKQQTSELELIFQALPDLCFLTEDDGTIIDYKAGSPTKFYVP 275

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            E  + K F   L  +    +   + ++        +E     +   +           L
Sbjct: 276 AEAFMGKKFYEVLPSSVAQKLQEAICQVKEKGTNVIVEYPLTINESIDFF---EARCLPL 332

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                  + + DI+E K+ +  L+ +  +A           A V+HE+R PLT I GF +
Sbjct: 333 LHDK-IMIIVRDITERKKTEELLNKSDTLA-----AIGQLAAGVAHEVRNPLTVIKGFIQ 386

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
                    +      +Y + +      +  I+ + L I+K +     +  E  ++ +  
Sbjct: 387 ------LFQINKEDQEKYFDLMLSEIERIEAILQEFLSIAKTD----EISTEKKNIYQIF 436

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
              +SL+   A    I +     +    I      +KQ+ +NIL N+I   P GG+I I 
Sbjct: 437 KNVVSLINTKAIMTNIQVELYTDSKDIIIECSENQLKQVFINILQNSIEAMPDGGRISIH 496

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                 + +I+ V D G+G+    +++  +PF         + +GTG+GL L+  +++++
Sbjct: 497 IKEIGKDGIIISVIDKGIGIPEERIKRLGEPFY------STKEKGTGIGLMLSYKIIESH 550

Query: 789 MGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
            G   I S    GT + I  P   +  P
Sbjct: 551 QGNISIMSEVGVGTTVTIYLPKIQSKKP 578


>gi|52142860|ref|YP_083969.1| sensor histidine kinase [Bacillus cereus E33L]
 gi|51976329|gb|AAU17879.1| sensor histidine kinase [Bacillus cereus E33L]
          Length = 595

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 89/508 (17%), Positives = 177/508 (34%), Gaps = 41/508 (8%)

Query: 314 YFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                E      +   P+    +  +G+    N    ++T Y + + I     L  L   
Sbjct: 107 LLTRKEEELHTILQNMPVMVDALDYNGDFVLWNRECEIVTGYTAEEVIGNPDALQLLYPD 166

Query: 373 PKLSDNNAIKPVML----YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
                    K +         +      +  + TI W+                      
Sbjct: 167 HNYRHEIQKKFLTRGKNFRDWEMRLTCKNGEIKTIMWSN-----------ISEQFPVSGF 215

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
               +  +    +  + K++ +  +L  I +A  D   +   +G I+         F  P
Sbjct: 216 SYWAVGVDITHLKAIEEKLKQQTSELELIFQALPDLCFLTEDDGTIIDYKAGSPTKFYVP 275

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            E  + K F   L  +    +   + ++        +E     +   +           L
Sbjct: 276 AEAFMGKKFYEVLPSSVAQKLQEAICQVKEKGTNVIVEYPLTINESIDFF---EARCLPL 332

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                  + + DI+E K+ +  L+ +  +A           A V+HE+R PLT I GF +
Sbjct: 333 LHDK-IMIIVRDITERKKTEELLNKSDTLA-----AIGQLAAGVAHEVRNPLTVIKGFIQ 386

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
                    +      +Y + +      +  I+ + L I+K +     +  E  ++ +  
Sbjct: 387 ------LFQINKEDQEKYFDLMLSEIERIEAILQEFLSIAKTD----EISTEKKNIYQIF 436

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
              +SL+   A    I +     +    I      +KQ+ +NIL N+I   P GG+I I 
Sbjct: 437 KNVVSLINTKAIMTNIQVELYTDSKDIIIECSENQLKQVFINILQNSIEAMPDGGRISIH 496

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                 + +I+ V D G+G+    +++  +PF         + +GTG+GL L+  +++++
Sbjct: 497 IKEIGKDGIIISVIDKGIGIPEERIKRLGEPFY------STKEKGTGIGLMLSYKIIESH 550

Query: 789 MGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
            G   I S    GT + I  P   +  P
Sbjct: 551 QGNISIMSEVGVGTTVTIYLPKIQSKKP 578


>gi|108763603|ref|YP_632616.1| sensory box histidine kinase/response regulator [Myxococcus xanthus
           DK 1622]
 gi|108467483|gb|ABF92668.1| sensory box histidine kinase/response regulator [Myxococcus xanthus
           DK 1622]
          Length = 1109

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 97/458 (21%), Positives = 185/458 (40%), Gaps = 27/458 (5%)

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
              +      S LL                  +  +   +   ++ +   R   +   F 
Sbjct: 213 ESMLGAYRKSSGLLLPEDRVITRVAGTTTQDAAAPSVYPSQLTVNLVAGGRPVGMLSLFS 272

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM-QLCSILEATSDGIAIINREGIIL 475
               A    + +  + +  +  D   + R  E E   ++  ++E+ +DG+ + + +  I+
Sbjct: 273 QKPDAFSEDDGVLLDVLANQTADAIQSLRSAEEEARHRMERMVESMADGVVLTDEKNDIV 332

Query: 476 STNRAVSKLF--GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
             N A  +L   G   E+   +     L      ++  +             E       
Sbjct: 333 VMNPAARRLLHAGENPEEQTTRLMEERLGFQPFHLVRGW---EYGGGQVLREEVKLFDRH 389

Query: 534 KEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
            +  +  +      L       + + DI+E K+ + +              K +F++ VS
Sbjct: 390 VQTTVTPVTDARNTLR---GVCVVLRDITEQKRLEER--------------KDEFVSMVS 432

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HE+RTPLT+I G  +++ N   G + N R   Y +    S   +  IV+DLLD+SK   G
Sbjct: 433 HELRTPLTSISGALDLVLNFMAGDI-NERQRRYLSLARDSTEKLNAIVDDLLDLSKFAKG 491

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713
           ++ ++FE   LDE V   +        EKR+L++     +  R+LAD   + Q+  N+L+
Sbjct: 492 RLRMNFEVSYLDELVQRVVEKYGPAFGEKRVLVKPVLPRHPLRVLADPNRLDQVLNNLLN 551

Query: 714 NAIHFTPSGGQIIISTTHTSN--EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           NA+ FTP GG++ +    TS+    V++   ++G  ++   LE+    F Q         
Sbjct: 552 NAVKFTPEGGEVRVEIHATSSLPGYVVVSCWNSGDPISEESLERIFDRFEQARTKANRTV 611

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            GTGLGL + + +V+A+ G+ +       G    ++ P
Sbjct: 612 RGTGLGLAICRNIVEAHGGRIWCEPCTD-GVRFMVVLP 648


>gi|148265594|ref|YP_001232300.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter
           uraniireducens Rf4]
 gi|146399094|gb|ABQ27727.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter
           uraniireducens Rf4]
          Length = 402

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 80/387 (20%), Positives = 161/387 (41%), Gaps = 23/387 (5%)

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
            + ++ +  +       + I+  +L ++ +A SD + I +  G I   N    +LF  P 
Sbjct: 28  YSEVKQKIQELEAANLGLRIKTNELQAVFDAISDSVVIYDHNGCIQHRNHVCPRLF--PT 85

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
           E ++ +         +         E         +   T     E +   +     + P
Sbjct: 86  ETLVGRSCRALFHPESDHSPQQCPVEQALAGKSMQISFTTTKGIGESRYFDVTATPIEDP 145

Query: 550 FSS-CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                  + + D++E +  + +L  A+K+     S      A V+HEI  PLT++ G++E
Sbjct: 146 NEQTRALVFIRDVTEKRLNELQLVQAEKM-----SSIGMLAAGVAHEINNPLTSVAGYAE 200

Query: 609 VIKN---QRFGPLGNPRYIE---YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
            +        G + + R  +   Y   I R       I++ LL  S+   G +      V
Sbjct: 201 ALLRRFRDETGLVEDNRLKDFKKYLEVIIRESYRCKGIIDSLLSFSRKSEGSVGF----V 256

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
            L++ ++E + LV+  A  ++I I+ S   ++P I  D   ++Q+ +N+  NA+      
Sbjct: 257 DLNKILNEVLELVRHKARNEKIEIQESMQPDLPMIKGDEAGLRQVFMNLTMNALQAIDGP 316

Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
           G I I+T    N  V   + D+G G+ +  +++   PF    +     G+G GLGL +  
Sbjct: 317 GMIKIAT-FDQNGVVTATICDSGCGIPSSLMDQIWDPFFTTKD----VGQGLGLGLAVTY 371

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFP 809
            ++  + G+ ++ S   +G+   +  P
Sbjct: 372 NIIKKHGGEIHVESKHGEGSKFTVRLP 398


>gi|85713981|ref|ZP_01044970.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A]
 gi|85699107|gb|EAQ36975.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A]
          Length = 939

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 97/776 (12%), Positives = 229/776 (29%), Gaps = 70/776 (9%)

Query: 81  RTVRFTWNIDAHGYLKEISEELPKTIGN-YAFKMIGMRLCDVSDILHIDPNNHIGDLLKR 139
             +   W  D    ++  ++   +T+G       +G +  +    +       I  ++  
Sbjct: 55  HPMFIWWGPDL---IQFYNDAYRQTMGPERHPSALGQKGRECWSEIWDIIGPQIEYVMAG 111

Query: 140 QNTWYGKTTLWPIE--GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG 197
               + +  L P+   G    V       PI   +    G     +      ++  R   
Sbjct: 112 HGATWHEDQLVPVTRHGRLEQVYWTYGFSPI-DNDEGVGGV--LVVCRDVTREHSARLAL 168

Query: 198 KRLDKKFSHL--------HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH 249
           +  + + + +         E+        ++  +       PP    +++   L   +  
Sbjct: 169 QEREIELARVQAIGRIGGLEVDLRTGHRSRKSPEYLKIHGLPPEAVHESREDWLRRVHPD 228

Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDF-HTINLNQYTKKQYFGTLQNNSKES----FEYLS 304
              + + +    +   +     +       +             ++   ++      ++ 
Sbjct: 229 DRAIAEGQFIDAVRGGDREYAVRYRIIRPSDGETRWISARSVIERDADGKAIRLFGAHID 288

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIA 363
             +         + E       +  P   +   S G+  + N  F      +        
Sbjct: 289 VTDQVESERSIRQREEEFRTLAEALPHHVWTATSDGSFNWFNRRFYDYVGARP----GEF 344

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
            G            +          +         RL   + +               ++
Sbjct: 345 SGKDWSKIVHPDDASATADARTRAVTSGESYEIEFRL---RRSDGIYHWFLSRAVPARDE 401

Query: 424 FPENMPQNGIEPEDVDTRINKRKM-----------EIEVMQLCSILEATSDGIAIINREG 472
               +   G + +  D +    K+           E +  +   I   + D + ++++ G
Sbjct: 402 DGRIIRWIGTDTDVHDQKRIAGKLAELNATLAERVEEKTRERDRIWNVSQDLLLVMDQHG 461

Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
           I  S N A ++  G+   +++ +                 +  +       T+       
Sbjct: 462 IWRSVNPAWTRTLGWSEAELMERTAEWIEHPEDIVKTRVEVRRLARGKA--TVRFENRLR 519

Query: 533 TKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES--SHKSDFLA 590
            K+     L                  D++  K    +L  A++   +            
Sbjct: 520 HKDGSYRWLSWTAVP--DQDLIYAVARDVTTEKAAAERLRAAEEALRQSQKMEAVGQLTG 577

Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650
            ++H+    LT I+G  + +   R       R   Y      S N    + + LL  ++ 
Sbjct: 578 GIAHDFNNLLTGIVGSLD-LLQTRLNQGRTDRAERYIEAAMASANRAAALTHRLLAFAR- 635

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710
              +  L  +PV  ++ +     L++     + I ++ + +  +   L D   ++   LN
Sbjct: 636 ---RQPLVPKPVDANQLILSLEDLLRRTI-GETIELKIAPSKQLWPTLCDPNQLESALLN 691

Query: 711 ILSNAIHFTPSGGQIIISTT-------------HTSNEEVILRVRDTGVGMTNYELEKAM 757
           +  NA    P+GG++ I+T                  + + + V DTG GM      +A 
Sbjct: 692 LAINARDAMPNGGRLTIATANVSIDATESGSSTRQPGDYICITVADTGTGMPPDVAARAF 751

Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
            PF          G+GTGLGL +       + G   + + P +GT I +  P +D+
Sbjct: 752 DPFFTTKP----IGQGTGLGLSMIYGFARQSNGHIALDTVPGQGTSIRLSLPRHDS 803


>gi|221199414|ref|ZP_03572458.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
           CGD2M]
 gi|221205683|ref|ZP_03578698.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
           CGD2]
 gi|221174521|gb|EEE06953.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
           CGD2]
 gi|221180699|gb|EEE13102.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
           CGD2M]
          Length = 991

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 124/692 (17%), Positives = 231/692 (33%), Gaps = 37/692 (5%)

Query: 140 QNTWYGKTTLWPIEGTNLYVPIDLAALP-----IYSRNREFSGFRGFGIVHVNRVDNDPR 194
           +       T W  +G     P++ A L       Y        +    +V  +    D R
Sbjct: 62  RRLVSASDTAWNPDGRASK-PVEDAFLAQQGYLRYEEPGTHHTYAATAVVDADHPATDYR 120

Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254
            L    ++  +      +   +  +      S +     L   + +    E Y +    L
Sbjct: 121 PLLALSERLLASAMWRDRAQLAPSQVYVIGASGRYMAVSLYAMSGIGPPLERYRNLLAAL 180

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
             E   ++     +           +    +              + +   +   +L   
Sbjct: 181 PHEWPDVMALVRDADANPAAAPADIVWLPPRFDPVSGQLVLRLAHWTFDQRQRPVALIVQ 240

Query: 315 FDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
                      +D     F V  H       PS        S          + +     
Sbjct: 241 TMRPSRFLNGILDADNGEFAVVDHEQRVLLTPSGNRSDDVMSAVRAPGERHATAVTQQFH 300

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
                   P+   + D   +     L      R     +                   + 
Sbjct: 301 DGRYVVRGPLPHTQWDVLFVYTRGMLLRAMAPR----LIGIAAGTLFGVALLVGAIVLVT 356

Query: 435 PEDVDTRINKRKMEIEVMQL-CSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDI 492
              +D    +    ++  +L  +++     G+A+I    G +L  N  +++  G     +
Sbjct: 357 RRVLDPSYLRATRLVDSERLNRTLIRTAPVGLALIAESTGAVLLRNEIMARHDGGAEHTL 416

Query: 493 LRKPFTVFL-EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
            R+ +       +    +   L     + L    ++ T      +  L + ++  K    
Sbjct: 417 SRRIWQSLAGAPDANPTLRKRLIGSREITLPAGGDRTT------DTHLLVNLVRVKYGGE 470

Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
           S    T+ DI+  K  +  L  A++ A++ +  KS FLA +SHEIRTPL A+IG  E++K
Sbjct: 471 SALLCTVVDITARKLTEQSLDAARRAADQANRAKSVFLATMSHEIRTPLNAVIGNLELMK 530

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
                           +  D S   +L I+ND+LD+SK+E+G++ +   P      + + 
Sbjct: 531 RGPLA----DAQRRRLHAADTSSTALLHILNDVLDLSKVEAGQLRIDAVPFDCAALLDDV 586

Query: 672 ISLVQLYANEKRILIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS-- 728
               +  A  K + +    A    P  + D   ++Q+  N+LSNAI FT +G  + ++  
Sbjct: 587 TESFRPLAERKGLSVICDVALEPSPYRIGDPIRIRQVVSNLLSNAIKFTDAG-HVRVAAH 645

Query: 729 --------TTHTSNEE--VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
                   T  T      V + V DTG+G+           + Q  +S   R  GTGLGL
Sbjct: 646 AVSDAAHGTGRTDGGAPVVEIVVADTGIGIPEAAQAAIFGLYRQADDSIHRRYGGTGLGL 705

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            L + ++DA  G   + S P  G+   +  PL
Sbjct: 706 ALCRRLLDAMNGDIAVSSAPGAGSTFRVRIPL 737


>gi|218128652|ref|ZP_03457456.1| hypothetical protein BACEGG_00223 [Bacteroides eggerthii DSM 20697]
 gi|217989107|gb|EEC55422.1| hypothetical protein BACEGG_00223 [Bacteroides eggerthii DSM 20697]
          Length = 983

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 86/405 (21%), Positives = 167/405 (41%), Gaps = 24/405 (5%)

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST- 477
               Q  E    +            +  +     +L   L+         + +   ++  
Sbjct: 443 VIIRQAAEENLIDIFGVNTTTLHQTQELLRAANNKLALALDIAHIIPWHWDLQKHAITCD 502

Query: 478 -NRA-VSKLFGYPVED----ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
            NR+      G   E     I    +   +  +    +      ++   ++   E+    
Sbjct: 503 ANRSPFELATGVKDERGVRIIHEADYFNNIHPDDAERIRDDYQALILGRVKALKEEFRTV 562

Query: 532 STKEEKLL--SLRII-IKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
             K  K     +    + +             ++  I++ K+ + +L +AK  AE+    
Sbjct: 563 IKKNGKEYINWVEARAVVEQRNEQGHPISLIGSLLIITDRKRNEQELINAKNRAEESDRL 622

Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
           KS FLA +SHEIRTPL AI+GFS ++         +    EY N I+ +  L+L +++D+
Sbjct: 623 KSAFLANMSHEIRTPLNAIVGFSSILATAEEEEEKS----EYINIIENNNQLLLQLISDV 678

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704
           LDI+KIE+  ++ ++  + L+  ++E  S   +      + +     ++   ++ +   +
Sbjct: 679 LDIAKIEASSLDFNYSSLDLNVLMNELESTALMRITSPDVCLEMIPDSDNCWVITERNRL 738

Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764
            QI +N+L+NAI FT  G +I          ++   V DTG G+   + +K  + F ++ 
Sbjct: 739 SQIIINLLNNAIKFTQKG-KITFGYKLQKE-KIYFYVTDTGCGIPAEKQDKIFERFIKLN 796

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           N      +GTGLGL + K++VDA  G+  + S    G+      P
Sbjct: 797 NF----AQGTGLGLSICKSIVDAMGGEIGVDSKVGNGSTFWFTLP 837


>gi|228927693|ref|ZP_04090742.1| hypothetical protein bthur0010_23990 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|229125029|ref|ZP_04254194.1| hypothetical protein bcere0016_53000 [Bacillus cereus 95/8201]
 gi|228658405|gb|EEL14080.1| hypothetical protein bcere0016_53000 [Bacillus cereus 95/8201]
 gi|228831943|gb|EEM77531.1| hypothetical protein bthur0010_23990 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
          Length = 590

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 89/508 (17%), Positives = 177/508 (34%), Gaps = 41/508 (8%)

Query: 314 YFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                E      +   P+    +  +G+    N    ++T Y + + I     L  L   
Sbjct: 102 LLTRKEEELHTILQNMPVMVDALDYNGDFVLWNRECEIVTGYTAEEVIGNPDALQLLYPD 161

Query: 373 PKLSDNNAIKPVML----YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
                    K +         +      +  + TI W+                      
Sbjct: 162 HNYRHEIQKKFLTRGKNFRDWEMRLTCKNGEIKTIMWSN-----------ISEQFPVSGF 210

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
               +  +    +  + K++ +  +L  I +A  D   +   +G I+         F  P
Sbjct: 211 SYWAVGVDITHLKAIEEKLKQQTSELELIFQALPDLCFLTEDDGTIIDYKAGSPTKFYVP 270

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            E  + K F   L  +    +   + ++        +E     +   +           L
Sbjct: 271 AEAFMGKKFYEVLPSSVAQKLQEAICQVKEKGTNVIVEYPLTINESIDFF---EARCLPL 327

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                  + + DI+E K+ +  L+ +  +A           A V+HE+R PLT I GF +
Sbjct: 328 LHDK-IMIIVRDITERKKTEELLNKSDTLA-----AIGQLAAGVAHEVRNPLTVIKGFIQ 381

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
                    +      +Y + +      +  I+ + L I+K +     +  E  ++ +  
Sbjct: 382 ------LFQINKEDQEKYFDLMLSEIERIEAILQEFLSIAKTD----EISTEKKNIYQIF 431

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
              +SL+   A    I +     +    I      +KQ+ +NIL N+I   P GG+I I 
Sbjct: 432 KNVVSLINTKAIMTNIQVELYADSKDIIIECSENQLKQVFINILQNSIEAMPDGGRISIH 491

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                 + +I+ V D G+G+    +++  +PF         + +GTG+GL L+  +++++
Sbjct: 492 IKEIGKDGIIISVIDKGIGIPEERIKRLGEPFY------STKEKGTGIGLMLSYKIIESH 545

Query: 789 MGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
            G   I S    GT + I  P   +  P
Sbjct: 546 QGNISIMSEVGVGTTVTIYLPKIQSKKP 573


>gi|186894665|ref|YP_001871777.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Yersinia pseudotuberculosis PB1/+]
 gi|186697691|gb|ACC88320.1| integral membrane sensor hybrid histidine kinase [Yersinia
           pseudotuberculosis PB1/+]
          Length = 957

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 95/371 (25%), Positives = 160/371 (43%), Gaps = 29/371 (7%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
             ++E        I+ +   GI+I+   +G  + +N                  +   L 
Sbjct: 359 ALRLEEHEQFNRKIVASAPVGISILRISDGTNILSNELA-------------HNYISLLT 405

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
                     +T I+       ++ +    T     L +  +  +          + D+S
Sbjct: 406 NED----RERITRIICERQANFVDVM----TSNNNNLQISFVHSRYRNEDVAICVLVDVS 457

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
              + +  L      AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R
Sbjct: 458 ARVKMEESLQEMATAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPQGVDR 516

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                  ++ S  L+L I++D+LD SKIES ++ +     S  E ++   +       +K
Sbjct: 517 ---LVTAMNNSSGLLLKIISDILDFSKIESEQLKIEPSEFSTVEVITHITANYLPLVVKK 573

Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
           R+ +      ++PR I  D   ++Q+  N+L+NAI FT +G  II+         +  RV
Sbjct: 574 RLGLYCFIEPDVPRLIEGDPVRLQQVISNLLNNAIKFTDTG-CIILQVRVRD-CYLEFRV 631

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
           RDTGVG+ + E+ +   PF Q+    Q   +GTGLGL + + +V+   G   + S    G
Sbjct: 632 RDTGVGIDSREINQLFDPFFQVGTGVQRHFQGTGLGLAICEKLVNLMDGDVEVISELGMG 691

Query: 802 TLIEIIFPLYD 812
           ++  I  PLY 
Sbjct: 692 SIFAIRIPLYH 702


>gi|218903769|ref|YP_002451603.1| sensor histidine kinase [Bacillus cereus AH820]
 gi|218538418|gb|ACK90816.1| sensor histidine kinase [Bacillus cereus AH820]
          Length = 595

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 89/508 (17%), Positives = 177/508 (34%), Gaps = 41/508 (8%)

Query: 314 YFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                E      +   P+    +  +G+    N    ++T Y + + I     L  L   
Sbjct: 107 LLTRKEEELHTILQNMPVMVDALDYNGDFVLWNRECEIVTGYTAEEVIGNPDALQLLYPD 166

Query: 373 PKLSDNNAIKPVML----YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
                    K +         +      +  + TI W+                      
Sbjct: 167 HNYRHEIQKKFLTRGKNFRDWEMRLTCKNGEIKTIMWSN-----------ISEQFPVSGF 215

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
               +  +    +  + K++ +  +L  I +A  D   +   +G I+         F  P
Sbjct: 216 SYWAVGVDITHLKAIEEKLKQQTSELELIFQALPDLCFLTEDDGTIIDYKAGSPTKFYVP 275

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            E  + K F   L  +    +   + ++        +E     +   +           L
Sbjct: 276 AEAFMGKKFYEVLPSSVAQKLQEAICQVKEKGTNVIVEYPLTINESIDFF---EARCLPL 332

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                  + + DI+E K+ +  L+ +  +A           A V+HE+R PLT I GF +
Sbjct: 333 LHDK-IMIIVRDITERKKTEELLNKSDTLA-----AIGQLAAGVAHEVRNPLTVIKGFIQ 386

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
                    +      +Y + +      +  I+ + L I+K +     +  E  ++ +  
Sbjct: 387 ------LFQINKEDQEKYFDLMLSEIERIEAILQEFLSIAKTD----EISTEKKNIYQIF 436

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
              +SL+   A    I +     +    I      +KQ+ +NIL N+I   P GG+I I 
Sbjct: 437 KNVVSLINTKAIMTNIQVELYADSKDIIIECSENQLKQVFINILQNSIEAMPDGGRISIH 496

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                 + +I+ V D G+G+    +++  +PF         + +GTG+GL L+  +++++
Sbjct: 497 IKEIGKDGIIISVIDKGIGIPEERIKRLGEPFY------STKEKGTGIGLMLSYKIIESH 550

Query: 789 MGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
            G   I S    GT + I  P   +  P
Sbjct: 551 QGNISIMSEVGVGTTVTIYLPKIQSKKP 578


>gi|302343588|ref|YP_003808117.1| multi-sensor signal transduction histidine kinase [Desulfarculus
           baarsii DSM 2075]
 gi|301640201|gb|ADK85523.1| multi-sensor signal transduction histidine kinase [Desulfarculus
           baarsii DSM 2075]
          Length = 483

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 97/488 (19%), Positives = 196/488 (40%), Gaps = 28/488 (5%)

Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL--------LDAPKLSDNNAIKPV 384
             V     +  A    L       ++      GL  +        L    +   + ++ +
Sbjct: 10  LVVDDEERIRQAVRRVLETMGMVVMEAANGREGLERIADYKPDLVLVDLMMPVMDGMEMI 69

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
              R     +A           +             A  F     +  IE   +      
Sbjct: 70  GRARKSHASLAFVVITGYATLEKAVEAMKQGADDFLAKPFKPQELRLVIER-VLKRVATL 128

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE-Q 503
           + M IE  +   ++E+ ++G+ +I+ E  ++  N A+ +L  +   ++L +     L   
Sbjct: 129 QDMAIEKSRTRVLVESMTNGVLVIDTERRVVLMNPALRRLARWDEGEVLGRDLEEALPCP 188

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDI 561
                ++  L      D +    +ITLG  +E   L +                    D+
Sbjct: 189 AVAQALSEVLAGQGDQDGQSVSCQITLGLAEEPMHLQVTCSPFLDSRGRLVGALAVFDDV 248

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           +  ++                  KS++++ V+HEI +PL++++   + +     G L N 
Sbjct: 249 TALRRLDE--------------LKSEYVSTVAHEIASPLSSVLSQLQNLSQGLAGEL-NE 293

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
           R  +           ++++  DLLD+SKIE+G M    E +++   + EA+ +++  A +
Sbjct: 294 RQGQIVRRARLRIEGIINLSKDLLDLSKIEAGAMGQAEERLAVGPILEEAVDIMRAKAAD 353

Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
           K   +    A  +PR+    R ++++ +N++SNA+ +TP GG+I +  T      V + V
Sbjct: 354 KAQSLTLEMAAELPRVAGVQRELQEVFVNLISNAVRYTPQGGRIDVRATAQD-GWVRVDV 412

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            D G G+   + EK  + F ++ ++      GTGLGLP+ K +V+A  G   + S P +G
Sbjct: 413 SDNGFGVPIEDQEKIFQRFYRVKDANTRNIIGTGLGLPIVKRVVEAMGGNVRLRSKPGQG 472

Query: 802 TLIEIIFP 809
           +   ++ P
Sbjct: 473 STFSVLLP 480



 Score = 42.7 bits (99), Expect = 0.28,   Method: Composition-based stats.
 Identities = 28/273 (10%), Positives = 66/273 (24%), Gaps = 21/273 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID    +  ++  L +       +++G  L +      +     + ++L  Q    G++ 
Sbjct: 152 IDTERRVVLMNPALRRLARWDEGEVLGRDLEEALPCPAVAQ--ALSEVLAGQGDQDGQSV 209

Query: 149 LWPIEGTNLYVP--IDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
              I       P  + +   P         G              D     +RLD+  S 
Sbjct: 210 SCQITLGLAEEPMHLQVTCSPFLDSRGRLVGAL---------AVFDDVTALRRLDELKSE 260

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
                    +          Q        +   ++        +       +   + +  
Sbjct: 261 YVSTVAHEIASPLSSVLSQLQN-------LSQGLAGELNERQGQIVRRARLRIEGIINLS 313

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
             L +        + Q  ++   G +   + +     +     SL+              
Sbjct: 314 KDLLDLSKIEAGAMGQAEERLAVGPILEEAVDIMRAKAADKAQSLTLEMAAELPRVAGVQ 373

Query: 327 DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDD 359
            +     FV    N     P    +    +  D
Sbjct: 374 RELQE-VFVNLISNAVRYTPQGGRIDVRATAQD 405


>gi|317152332|ref|YP_004120380.1| ATPase ATP-binding domain-containing protein [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316942583|gb|ADU61634.1| ATP-binding region ATPase domain protein [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 765

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 79/251 (31%), Positives = 130/251 (51%), Gaps = 14/251 (5%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           KLS A+++AE     KS FLAR+SHEIRTP+ A++G  E++         N     Y + 
Sbjct: 364 KLSRAREMAESADEAKSQFLARMSHEIRTPMNAMLGAGELLAETSL----NGDQRRYVSI 419

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
              +G  + ++V D+LD+S+ ESG+  L   P SL  A+ +A ++  L A  K + +R  
Sbjct: 420 YQSAGEHLRELVRDVLDLSRFESGRFRLEETPFSLRSAIDKACAVFTLEARNKGLDLRCC 479

Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSG----GQIIISTTHTSNEE---VILRV 741
              + P  ++ D  +++Q+ +N+L N+I FTP G    G   +   H ++ +   +   V
Sbjct: 480 VDPDTPDRLVGDPTALRQVLVNLLGNSIKFTPQGSVSLGVRSVGAGHEADGQTCTLEFTV 539

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
           +DTG+G+   + E   + F Q   S   +  GTGLGL + + +V    G   + S P +G
Sbjct: 540 QDTGIGIPVDKQEVIFERFSQADGSTSRKYGGTGLGLSICRNLVTFMGGSIAVDSQPGEG 599

Query: 802 T--LIEIIFPL 810
           T     +  PL
Sbjct: 600 TTLTFTVRLPL 610


>gi|229097165|ref|ZP_04228127.1| hypothetical protein bcere0020_24080 [Bacillus cereus Rock3-29]
 gi|228685976|gb|EEL39892.1| hypothetical protein bcere0020_24080 [Bacillus cereus Rock3-29]
          Length = 590

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 86/501 (17%), Positives = 172/501 (34%), Gaps = 41/501 (8%)

Query: 314 YFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                E      +   P+    +  +G+    N    ++T Y + + I     L  L   
Sbjct: 102 LLSRKEEELHTILQNMPVMVDALDYNGDFVLWNRECEIVTGYTAEEIIGNPNALQLLYPD 161

Query: 373 PKLSDNNAIKPVML----YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
                    K +         + +    +  + TI W+                      
Sbjct: 162 HNYRHQIQNKFLTRGKNFRDWEMSLTCKNGEIKTIMWSN-----------ISEQFPVTGF 210

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
               +  +    +  + +++ +  +L  I +A  D   +   +G I+         F  P
Sbjct: 211 SYWAVGVDITHLKAIEEQLKQQTSELELIFKALPDLCFLTKDDGTIIDYKAGSPTKFYVP 270

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            E  + K F   L           + ++        +E           +         L
Sbjct: 271 AEAFMGKKFYEILPSPVAQQFQEAIRQLKDEGKNVIVEYPLTI---NGSIDFFEARCLPL 327

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                  + + DI+E K+ +  L+ +  +A           A V+HE+R PLT I GF +
Sbjct: 328 LQDK-IMIIVRDITERKKAEELLNKSDTLA-----AIGQLAAGVAHEVRNPLTVIKGFIQ 381

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
                    +      +Y + +      +  I+ + L I+K +     ++ E  ++ +  
Sbjct: 382 ------LFQINKEDQEKYFDLMLSEIERIEAILQEFLSIAKTD----EINTEKKNIYQIF 431

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
              +SL+   A    I +     +    I      +KQ+ +NIL N+I    +GG+I I 
Sbjct: 432 KNVVSLINTKAIMTNIQVELFTDSEEIIIECSENQLKQVFINILQNSIEAMLNGGKISIH 491

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                    I+ V D G+G+    +++  +PF         + +GTG+GL L+  +++++
Sbjct: 492 IKEIHKNGFIISVIDEGIGIPEERIKRLGEPFY------STKEKGTGIGLMLSYKIIESH 545

Query: 789 MGKFYIFSTPAKGTLIEIIFP 809
            G   I S    GT + I  P
Sbjct: 546 QGTISITSEVGVGTTVTIYLP 566


>gi|119357937|ref|YP_912581.1| multi-sensor hybrid histidine kinase [Chlorobium phaeobacteroides
           DSM 266]
 gi|119355286|gb|ABL66157.1| multi-sensor hybrid histidine kinase [Chlorobium phaeobacteroides
           DSM 266]
          Length = 985

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 103/565 (18%), Positives = 211/565 (37%), Gaps = 41/565 (7%)

Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
            L+T+       E+  L +Q      N+    K      ++   +++   L        +
Sbjct: 15  ELETDSLRSRRIEQELLEKQAVLGHQNIKLIRKSIELSDVKRQLEDNNYELEISQAKLQN 74

Query: 313 AY--FDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
           A     E EN     +   P     V     + Y N +   +  +K    +        L
Sbjct: 75  ALNSLRESENTLSSVLVNSPDTIIAVDRDHRIIYVNRA---MPGHKKTLAVG-----DHL 126

Query: 370 LDAPKLSDNNAI-KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
            D      ++     +               L                 F       E  
Sbjct: 127 CDHIMQPYHDRYHHTIERVIVTGKTAVLECELVVSP----EETIELESRFAPCFLNGEVT 182

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
               +  +  + +  + +++  ++ L            ++ RE   +   + ++ L    
Sbjct: 183 SVVMLSVDITERKGMELELKKTLIDLERFNR------VMVGRELRNIELKKRIASL---- 232

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK---ITLGSTKEEKLLSLRIII 545
             D++          ++         +   +      E+         K++++  L +I 
Sbjct: 233 QNDLVLSSGNAQASDDSRQDFATEDEDCAGIHHGDGFEEACDEVQYR-KQQRMALLNLIE 291

Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
                 +    T   + E      +++   + A K +  KS FLA +SHE+RTP+  +IG
Sbjct: 292 DANLARNELLETNRKLEESVIRTQEMA---RAASKANEAKSQFLANMSHEVRTPMNGVIG 348

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
            S+++ +       +P   +Y   I  SG  +L I+ND+LD SKIE+ +++L      L 
Sbjct: 349 MSDLLLDTSL----DPEQRKYVETIISSGKNLLSIINDILDFSKIEANRLDLDVVDFDLL 404

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ 724
           E + +   ++ L A +K + +     + +PR +  D   ++QI +N++ NA+ FT SG  
Sbjct: 405 ELLEDVCGILGLQAQQKGLELTLVTGSFLPRFLRGDQARIRQILVNLVGNAVKFTHSGEV 464

Query: 725 IIISTTHTSNE-EVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           ++ +      + +V +R  VRDTG+G+    ++   +PF Q   S + +  GTGLGL ++
Sbjct: 465 VVCAMAQEERDSQVTIRLLVRDTGIGIPREMMKAVFEPFIQADGSTRRKYGGTGLGLAIS 524

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEI 806
             +         + ST  +G++   
Sbjct: 525 NQLAKKMGSTIILESTNGEGSVFWF 549


>gi|239831437|ref|ZP_04679766.1| integral membrane sensor signal transduction histidine kinase
           [Ochrobactrum intermedium LMG 3301]
 gi|239823704|gb|EEQ95272.1| integral membrane sensor signal transduction histidine kinase
           [Ochrobactrum intermedium LMG 3301]
          Length = 610

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 90/355 (25%), Positives = 171/355 (48%), Gaps = 4/355 (1%)

Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL 519
           A  D    ++ EG++ S +   +KL G   + +        +           L ++ + 
Sbjct: 205 AAGDVQFSLDMEGVVSSVDANSAKLLGVQPKMLEGTALIDRVHVADRVEYLSLLADLRAG 264

Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579
              + ++         E +      ++    +   +L    +   ++   +++  K   E
Sbjct: 265 ATVRKIDVRLRSIENGETIFR-TYRLEGAASAHAITLIGRSLEGEQKLLEEIATLKAELE 323

Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639
            E   K   LA VSHE+RTPL +IIGFS+++ ++  G L + +  EYA  I +SG+ +L+
Sbjct: 324 SERIGKGRLLAAVSHELRTPLNSIIGFSDMLSHEMGGKLASEKQREYAGLIHQSGHYLLE 383

Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA 699
           +VN +LD S++E+G  ++  + ++  EA     +++   A +K +       N I  ++A
Sbjct: 384 LVNAVLDNSRLETGNYSIDPQTLAFREAAEMCTAVMLPLAEKKGVAFCHRVGNGIGELVA 443

Query: 700 DLRSVKQIALNILSNAIHFTPSGGQIIISTTH---TSNEEVILRVRDTGVGMTNYELEKA 756
           D R+V+QI LN+  NA+ FT SGG + I            +   V DTG+G+   ++++ 
Sbjct: 444 DRRAVQQILLNLAGNAVKFTQSGGCVTIDAARVMAEGRAMLEFSVSDTGIGIEPEDMQRI 503

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
             PF +  N+     EG+GLGL + K +V+ + G   + S P +GT++ +  P+ 
Sbjct: 504 GTPFVRANNNYARAQEGSGLGLSVVKGLVELHQGTMQLKSCPGEGTVVTVRLPVA 558


>gi|162418760|ref|YP_001605841.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Yersinia pestis Angola]
 gi|162351575|gb|ABX85523.1| sensor kinase protein RcsC [Yersinia pestis Angola]
          Length = 949

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 95/371 (25%), Positives = 160/371 (43%), Gaps = 29/371 (7%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
             ++E        I+ +   GI+I+   +G  + +N                  +   L 
Sbjct: 351 ALRLEEHEQFNRKIVASAPVGISILRISDGTNILSNELA-------------HNYISLLT 397

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
                     +T I+       ++ +    T     L +  +  +          + D+S
Sbjct: 398 NED----RERITRIICERQANFVDVM----TSNNNNLQISFVHSRYRNEDVAICVLVDVS 449

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
              + +  L      AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R
Sbjct: 450 ARVKMEESLQEMATAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPQGVDR 508

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                  ++ S  L+L I++D+LD SKIES ++ +     S  E ++   +       +K
Sbjct: 509 ---LVTAMNNSSGLLLKIISDILDFSKIESEQLKIEPSEFSTVEVITHITANYLPLVVKK 565

Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
           R+ +      ++PR I  D   ++Q+  N+L+NAI FT +G  II+         +  RV
Sbjct: 566 RLGLYCFIEPDVPRLIEGDPVRLQQVISNLLNNAIKFTDTG-CIILQVRVRD-CYLEFRV 623

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
           RDTGVG+ + E+ +   PF Q+    Q   +GTGLGL + + +V+   G   + S    G
Sbjct: 624 RDTGVGIDSREINQLFDPFFQVGTGVQRHFQGTGLGLAICEKLVNLMDGDVEVISELGMG 683

Query: 802 TLIEIIFPLYD 812
           ++  I  PLY 
Sbjct: 684 SIFAIRIPLYH 694


>gi|117923856|ref|YP_864473.1| periplasmic sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117607612|gb|ABK43067.1| periplasmic sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1302

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 108/613 (17%), Positives = 220/613 (35%), Gaps = 71/613 (11%)

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ---------NNSKE 298
           A   D+ ++      +  E S+P Q     +             LQ         N   +
Sbjct: 342 APLRDLTESAHMLAKSLHEGSIPHQNRQDEVGTLARAIHLLLQRLQHIHQRTQRFNEQLQ 401

Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLT----- 352
           +             A  DE  +L  E      I    +    +      +FL LT     
Sbjct: 402 TEVAQRTTALQETIALADERRSLLAEVQSMARIGGCAWDPTHDQLSVTEAFLQLTNSYGA 461

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
              ++ D+    G+                 + +           A L        ++  
Sbjct: 462 PPTTLQDLLDLYGIE--------DRERLQHMLEIALQSGLKGDMVASL------GGHNQL 507

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ------LCSILEATSDGIA 466
                 +   Q P  +  + +  +     + +     E  +      L  +  A+ D + 
Sbjct: 508 WLRTLLQPIRQGPATIKIHIVIQDITREHLIQEAHTREERRNTWLLKLNEVAYASGDALM 567

Query: 467 IINREGIIL-STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
            +  +G I  S +     ++     + + +   ++     P+ ++ Y     +   +  +
Sbjct: 568 ELALQGAITLSASPQAFFIWMDSSLNHICQE-RLYPAPRDPAAVDRYRPARFAPSQQAFI 626

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM-----------HDIS------------ 562
            K ++    +        ++  L         +            DI             
Sbjct: 627 SKESVLHHAQ-AATDQPALVLPLFEDRQVIALLGVLGASTPYDNRDIQHLHYFAQGLWRV 685

Query: 563 -EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
            + ++++  +  A   A++ ++ K  FLA +SHEIRTP+ AI+GF+E +   +  P  + 
Sbjct: 686 LQRRRDQEMVKQATAEAQRANAVKGRFLANMSHEIRTPMNAIMGFTE-LSLTQHPPAPHD 744

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
           R   +   I  +   +L ++ND+LD SKI++ ++ L   P S  E + +   ++   A  
Sbjct: 745 R---HLQAIRTASQTLLALLNDVLDFSKIDAEQLALEQIPFSPTEQLQQIAQMLAPQAQA 801

Query: 682 KRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---- 736
           K +   T    ++P +L  D   ++Q+ +N++SNAI FT  G  ++    +    E    
Sbjct: 802 KGLHFHTFQQGSMPTLLLGDALRLRQVLINLVSNAIKFTHQGKVVLGMYGNEPTPEGRCL 861

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           +   V D+G+G+   + E+  +PF Q   S      G+GLGL ++K +V    G+  + S
Sbjct: 862 LRFEVIDSGIGIEASQQERLFQPFVQGDLSTTRTYGGSGLGLAISKRLVHLMGGEMQLES 921

Query: 797 TPAKGTLIEIIFP 809
           T   G+    + P
Sbjct: 922 TLGAGSKFSCLLP 934


>gi|260755773|ref|ZP_05868121.1| histidine kinase [Brucella abortus bv. 6 str. 870]
 gi|260758996|ref|ZP_05871344.1| histidine kinase [Brucella abortus bv. 4 str. 292]
 gi|260884797|ref|ZP_05896411.1| histidine kinase [Brucella abortus bv. 9 str. C68]
 gi|260669314|gb|EEX56254.1| histidine kinase [Brucella abortus bv. 4 str. 292]
 gi|260675881|gb|EEX62702.1| histidine kinase [Brucella abortus bv. 6 str. 870]
 gi|260874325|gb|EEX81394.1| histidine kinase [Brucella abortus bv. 9 str. C68]
          Length = 843

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 132/724 (18%), Positives = 263/724 (36%), Gaps = 49/724 (6%)

Query: 110 AFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN--TWYGKTTLWPIEGTNLYVPIDLAALP 167
              ++G                  G  L+ Q+        +    +     + ++     
Sbjct: 134 RADVVGQLPDACGAPQDRPAFLAFGRWLRPQSVTALERAISTLREQARAFDLTVETVNGS 193

Query: 168 IYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ 227
           +   +   SG  GF +    +     +A    L+ +   L +  +    +          
Sbjct: 194 LLDVHGRTSG--GFAVA-CFQSLQGVQAERASLEAQNRELADRIELMRRLLDRIEQPAWL 250

Query: 228 QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287
           +     +   N   +     A+    + +E   L  ++     E++ F    + +     
Sbjct: 251 RDGNGRIEWVNLAYAQAVDMANASQ-VISEGRELFGAQARQRLERDRFAEPVVQEQLTAV 309

Query: 288 YFGTLQ--------NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG 339
             G  +          S             ++            ET+D+      ++   
Sbjct: 310 VHGDRRVFDVIDVSAESGSVGLGFDLTEVQAVRDELSRTLKSHAETLDQLSTAVAIFDPE 369

Query: 340 -NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398
             L + N +F+ L     V  +E     + + D  +       +P      D    A  A
Sbjct: 370 MKLQFFNQAFVKLWGL-DVAWLETRPSNTLIFDRLRAEGKLPEQPEWRKWKDSLLSAYRA 428

Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI- 457
                    E    M  +P  +  +   N    G      +    K ++E     L  + 
Sbjct: 429 V--------EPEEHMWHLPDTRTMRVVANPHPQGGVTWFFENMTEKFELEGRYNTLIKVQ 480

Query: 458 ---LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYL 513
              L+  ++ +A+   +G +  +N + + L+  P E +      ++  +       +   
Sbjct: 481 GETLDHLAEAVAVFGSDGRLRLSNPSFAALWSLPSEMVREGTHISIIAKLCNQRGGDGLW 540

Query: 514 TEILSLDLRQTLEKITL---GSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570
            + +S       ++          +  +LS  ++           LT  D+++  + +  
Sbjct: 541 EDFVSTVTGFLDQRDGRMGQVELSDGAILSFAVVPLP---KGQTMLTFIDVTDTVRVERA 597

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           L    +  E     K+DF+  VS+E+R+PLT IIGF+E+++   FG L N R +EY +YI
Sbjct: 598 LKEKNEALELADQIKNDFVQHVSYELRSPLTNIIGFTELLQTPAFGSL-NERQLEYLDYI 656

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
             S +++L IVND+LD++ +++G M L    VS+ EA+S A S V     +  I +    
Sbjct: 657 STSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEAISAAASRVSERLRDHNIGLDVDI 716

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
           A+++    AD   V+Q+  N+LSNA+++ P G  I++        +V+  V D G GM +
Sbjct: 717 ADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVLQVA-RDGADVVFAVHDDGHGMPS 775

Query: 751 YELEKAMKPFGQIPN-----SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
             L+   K F   PN        +          + K+ V+ + G+  I +   +GT + 
Sbjct: 776 EVLDTVFKRFQSYPNGGRRRGAGLGLA-------IVKSFVELHGGRVEIDTGEERGTTVI 828

Query: 806 IIFP 809
             FP
Sbjct: 829 CRFP 832


>gi|221197443|ref|ZP_03570490.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
           CGD2M]
 gi|221204116|ref|ZP_03577134.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
           CGD2]
 gi|221176282|gb|EEE08711.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
           CGD2]
 gi|221183997|gb|EEE16397.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
           CGD2M]
          Length = 1001

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 105/602 (17%), Positives = 203/602 (33%), Gaps = 39/602 (6%)

Query: 221 KYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINL 280
             D        P  R+  ++ ++  +   +           L + +       D     L
Sbjct: 177 GGDFIGIVGVQPVGRLTGRLDAIDMHALIRSVEPHRGIGVPLRTIDGRDDALLDTRDDTL 236

Query: 281 NQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN 340
                 +    +++ S +   +L                      V     P +      
Sbjct: 237 LGRPVWRLSRPVRDASGQPIAWLVINTRAQ---------------VGAIMKPDYADDTHA 281

Query: 341 LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400
           L  A    + +        +E A   +      + + +      ++              
Sbjct: 282 LVDA-RGTVAIGAPVPAALVERALAFARAPGDVRAAVHRVGTRFVIGDRLPESDLVFVTT 340

Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR---INKRKMEIEVMQLCSI 457
            + +   E            A      +    +  +    R       ++        ++
Sbjct: 341 FSWRSVVEALAVSLGATAGAALFAIAALWLAVVAFDRRALRPAYRRAIRLIESDALNRAL 400

Query: 458 LEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           +     G+A+++  +G  +  N  +++      +  L K       ++          + 
Sbjct: 401 IRTAPAGLALLSLADGDDIVCNETMTRYERLTSDAPLGKRLWRAYREH---------RDA 451

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKK 576
                  T E        +   +   I+  +         T+ DI+  KQ + KL  A+ 
Sbjct: 452 SGYAKVVTCELPIAPDRPDTPHVFANIMRTRYRGVDALLCTLTDITARKQMEQKLHEARV 511

Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
            AE  +  KS FLA +SHEIRTPL AI+G  E++      P          + I  S + 
Sbjct: 512 AAESANKAKSTFLATMSHEIRTPLNAIVGNLELMARAPLAPTE----RRRLDTIASSSDA 567

Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696
           +L I++D+LD+SK ES +M +   P  + + + +  +  +  A+ K + +    A  +  
Sbjct: 568 LLRIIDDVLDLSKAESNQMTIERIPFDVRDVLDDIAAFYRPLASAKGLELTCRVAPELAD 627

Query: 697 -ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDTGVGMTNY 751
             + D   ++QI  N++ NAI FT  G  + I             V +RV DTG+G+   
Sbjct: 628 GYVGDPVRLRQIVSNLVDNAIKFTERGS-VSIDARRVVRGAGGARVEIRVADTGIGIPAD 686

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
            +      + Q   S   R  GTGLGLPL + +     G   + S   +GT + +  PL 
Sbjct: 687 SVPTLFDVYIQADASIYRRFGGTGLGLPLCRRIAMLMHGDLTVDSREREGTTMCVTLPLP 746

Query: 812 DT 813
           + 
Sbjct: 747 EA 748


>gi|189465320|ref|ZP_03014105.1| hypothetical protein BACINT_01668 [Bacteroides intestinalis DSM
           17393]
 gi|189437594|gb|EDV06579.1| hypothetical protein BACINT_01668 [Bacteroides intestinalis DSM
           17393]
          Length = 381

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 79/345 (22%), Positives = 147/345 (42%), Gaps = 26/345 (7%)

Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
           G +L  N A+S   G    ++            +  +         +      LE     
Sbjct: 39  GDLLRCNNALSAEGGCGTHELCG----------SCPIRRKIEETYRAKSSFTDLEATLDI 88

Query: 532 STKEEKL----LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
             +  ++      +     ++       +T+HDI+  K+ + +L  A++ AE     KS 
Sbjct: 89  RDRRGEVSECDTYVSGEYMEIDDKEGMVITVHDITRLKKAEVELHKAREKAENADRSKSA 148

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           FLA +SHEIRTPL AI+GFSE++              ++   +  +  L+  ++ D+LD+
Sbjct: 149 FLANMSHEIRTPLNAIVGFSELLA----SASTEEEKTQFLEIVHSNNELLQQLIADILDL 204

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR--ILIRTSFANNIPRILADLRSVK 705
           SKIE+G +   F  V + + + +   L ++   +K   I I      +   +  D   ++
Sbjct: 205 SKIEAGTLEFTFSEVDVKQLMLDIEQLFRMRLEDKAAVIQIIRETPADECIMYTDRNRLQ 264

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           Q+  N ++NA+ FT  G  I       +   +   V+DTG G+   ++    + F ++  
Sbjct: 265 QVVSNFMTNAVKFTDEGS-ITFGYNRCAEG-LYFYVKDTGSGIPEDKVNHIFERFVRVEQ 322

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
                 +GTGLGL + + ++    GK  + S   KG+    I P+
Sbjct: 323 ----NKKGTGLGLAICEMIIRKLGGKIGVESEYGKGSTFWFILPI 363


>gi|165924538|ref|ZP_02220370.1| sensor kinase protein RcsC [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|229841162|ref|ZP_04461321.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229843267|ref|ZP_04463413.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229903349|ref|ZP_04518462.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Yersinia pestis Nepal516]
 gi|165923598|gb|EDR40730.1| sensor kinase protein RcsC [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|229679119|gb|EEO75222.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Yersinia pestis Nepal516]
 gi|229689614|gb|EEO81675.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229697528|gb|EEO87575.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Yersinia pestis biovar Orientalis str. PEXU2]
          Length = 949

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 95/371 (25%), Positives = 160/371 (43%), Gaps = 29/371 (7%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
             ++E        I+ +   GI+I+   +G  + +N                  +   L 
Sbjct: 351 ALRLEEHEQFNRKIVASAPVGISILRISDGTNILSNELA-------------HNYISLLT 397

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
                     +T I+       ++ +    T     L +  +  +          + D+S
Sbjct: 398 NED----RERITRIICERQANFVDVM----TSNNNNLQISFVHSRYRNEDVAICVLVDVS 449

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
              + +  L      AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R
Sbjct: 450 ARVKMEESLQEMATAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPQGVDR 508

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                  ++ S  L+L I++D+LD SKIES ++ +     S  E ++   +       +K
Sbjct: 509 ---LVTAMNNSSGLLLKIISDILDFSKIESEQLKIEPSEFSTVEVITHITANYLPLVVKK 565

Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
           R+ +      ++PR I  D   ++Q+  N+L+NAI FT +G  II+         +  RV
Sbjct: 566 RLGLYCFIEPDVPRLIEGDPVRLQQVISNLLNNAIKFTDTG-CIILQVRVRD-CYLEFRV 623

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
           RDTGVG+ + E+ +   PF Q+    Q   +GTGLGL + + +V+   G   + S    G
Sbjct: 624 RDTGVGIDSREINQLFDPFFQVGTGVQRHFQGTGLGLAICEKLVNLMDGDVEVISELGMG 683

Query: 802 TLIEIIFPLYD 812
           ++  I  PLY 
Sbjct: 684 SIFAIRIPLYH 694


>gi|154253591|ref|YP_001414415.1| integral membrane sensor signal transduction histidine kinase
           [Parvibaculum lavamentivorans DS-1]
 gi|154157541|gb|ABS64758.1| integral membrane sensor signal transduction histidine kinase
           [Parvibaculum lavamentivorans DS-1]
          Length = 468

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 89/277 (32%), Positives = 152/277 (54%), Gaps = 3/277 (1%)

Query: 536 EKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI---AEKESSHKSDFLARV 592
             ++++     ++           + +E ++   +     ++    E+E+  K++FLA +
Sbjct: 180 GMVIAILAQEIRVRIYRRVISMREEAAERERSLAQALAKTRLYASMERENKAKTEFLANM 239

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHE+RTPL AI+GFSE ++ + FGPLG+PRY+EY + I  +G  +L +VND+LD+S+IE 
Sbjct: 240 SHELRTPLNAILGFSEAMQMELFGPLGHPRYVEYMHDIHHAGTHLLSLVNDILDLSRIEL 299

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712
             M+L  + +         +++V+  A    + +    A   P +  D R +KQ+ +N+L
Sbjct: 300 EGMSLTPQRIDFSGVCHNCLAIVRGRAERGGVQLIFECAPPFPEVETDERRLKQVLINLL 359

Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           SNA+ FTP+GG + +      +   I+R+RDTG+GM+  E+E+A++PF Q         E
Sbjct: 360 SNAVKFTPAGGTVSLDVRPAPDGGGIIRIRDTGIGMSETEVEQALRPFWQADAGLDRSFE 419

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           G GLGL L   ++    G   I S    GTL+ +  P
Sbjct: 420 GAGLGLALVSELLQLMGGSITIESERGAGTLVTVGLP 456


>gi|284035551|ref|YP_003385481.1| multi-sensor signal transduction histidine kinase [Spirosoma linguale
            DSM 74]
 gi|283814844|gb|ADB36682.1| multi-sensor signal transduction histidine kinase [Spirosoma linguale
            DSM 74]
          Length = 1484

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 106/750 (14%), Positives = 236/750 (31%), Gaps = 43/750 (5%)

Query: 86   TWNIDAHGYLKEISEELPKTIGNYAFK--MIGMRLCDVSDILHIDP-NNHIGDLLKRQNT 142
             W  D       + +++ +  G       +      ++      +         L  + T
Sbjct: 748  IWEYDLATEKFSLDDQMYRICGIDNQHMPLDAELFSNLIHPADRERFQQAKSYALANKLT 807

Query: 143  WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
                  L    G    V  ++   P+   +++    +  G+V             +R  +
Sbjct: 808  SSLNFRLLQPSG--QLVYGEMRMQPLLDEHQQPI--QLIGVVQDRTAQRQTELALQRSKE 863

Query: 203  KFSHLHEIKKGHSSVEKEKYDIFSQQSPPP---HLRMKNKVSS--LTEYYAHKDDVLKTE 257
            ++  L                     +         + + +    L+        V    
Sbjct: 864  RYLALVNNLHEIVFQIDLTGSFTFLNNAWTETIGYPLADSIGQSILSFLSPADHQVCSQL 923

Query: 258  KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
               L+T E     +   F   N      +     L +  +            +      +
Sbjct: 924  IDQLVTKETQLCQKTVAFIAQNGETKIAEVDARLLTDAQELPIGITGTFRDVTQQNKATD 983

Query: 318  GENLTPETVDKC-----PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                + +           +   +   G +   N +  L +  KS+D++       T    
Sbjct: 984  ALRQSEQRFKAIFNSTFQMIGLLCPQGTILEMNDTACLASG-KSMDELAGKYLWETYCWQ 1042

Query: 373  PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
               +     +  +   +    +        I    +  + + F      N   E +    
Sbjct: 1043 LSPAIWQKCRAAVTRAAGGEPVNYE---TNIWLAGQTVVPIDFSVRPLFNDAGEVVLLIV 1099

Query: 433  IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG---IILSTNRAVSKLFGYPV 489
               +    +  ++ ++    +   I E       I  REG        N    ++ G   
Sbjct: 1100 EGHDLSSYKQMQQALQESEQRFREIAEKVDSLFWI--REGGSPRFSYVNPMYERITGRSC 1157

Query: 490  EDILRKP--FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL--RIII 545
            E +   P  F  F+ +    ++   L      D     +    G     +   +      
Sbjct: 1158 ESLYEDPTSFLDFVVEEDRPMLLQLLKLDQPYDGPIHFQARIAGKI---RWFEIRGFFTK 1214

Query: 546  KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
                    +     D++   + K  +  A +  +  +  KS F++  SH+ RTPL  I  
Sbjct: 1215 DATGKVVRHIGVGQDVTSQMENKQVMEAALEREQALNKLKSLFVSMASHQFRTPLMTIQS 1274

Query: 606  FSEVI--KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
             SE+I     +      P    + + I      + +I+ D+L + + +SGK+++  E V+
Sbjct: 1275 SSELIEFLVNQDNTDQKPAVQRHLHRIKGEVGKLTNILADILLLGQSDSGKISMQAEQVN 1334

Query: 664  LDEAVSEAISL-VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
            L   +++           ++R+LI+ +  +    +  D + +  +  N+L+NA  ++   
Sbjct: 1335 LLPYITQIRDDYFSTGLGQRRVLIQANEQDYWAAV--DRKLMSHVLQNLLTNATKYSKGD 1392

Query: 723  GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
              I ++    + + + L V D G+G+   EL      F +   S   + +GTGLGL +A+
Sbjct: 1393 PLIRLT---QTEQTIQLEVIDDGIGIPAGELPLLFDSFFRA--SNARQFQGTGLGLSIAR 1447

Query: 783  AMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
              V+ + G   + S   KGT   +  P  +
Sbjct: 1448 QFVELHNGTITVQSEVGKGTTFTVTLPAGE 1477



 Score =  123 bits (310), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 58/535 (10%), Positives = 151/535 (28%), Gaps = 45/535 (8%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIG--------------MRLCDVSDILH---IDPNN 131
             D  G ++ I+  L    G  A +++G                +  ++  L    ++ + 
Sbjct: 609  TDTQGIIQLINPALEVMTGYKAHELVGKVSPGVLRAPQTHQRLIQQLTPHLDDPTLEGDA 668

Query: 132  HIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN 191
             +   ++       + TL   +G  L V   ++ L  Y       G+  F  V    V  
Sbjct: 669  LVTAYVQEHTFLQRENTLQHKDGHLLPVLSTVSGL--YDEQGVLLGYVDF--VTDISVFK 724

Query: 192  DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS-------PPPHLRMKNKVSSLT 244
              +   K+   +     +             + FS                  +      
Sbjct: 725  QAQETAKKAYHRLQLAADTAGLGIWEYDLATEKFSLDDQMYRICGIDNQHMPLDAELFSN 784

Query: 245  EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
              +    +  +  K   L ++ +S          +      +     L +  ++  + + 
Sbjct: 785  LIHPADRERFQQAKSYALANKLTS-SLNFRLLQPSGQLVYGEMRMQPLLDEHQQPIQLIG 843

Query: 305  HRNHPSL----SAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDD 359
                 +            +      V+      F +   G+  + N ++     Y   D 
Sbjct: 844  VVQDRTAQRQTELALQRSKERYLALVNNLHEIVFQIDLTGSFTFLNNAWTETIGYPLADS 903

Query: 360  IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
            I       ++L     +D+     ++     +        +  I  N E  +A       
Sbjct: 904  IGQ-----SILSFLSPADHQVCSQLIDQLVTKETQLCQKTVAFIAQNGETKIA-EVDARL 957

Query: 420  KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
              +     +   G   +          +     +  +I  +T   I ++  +G IL  N 
Sbjct: 958  LTDAQELPIGITGTFRDVTQQNKATDALRQSEQRFKAIFNSTFQMIGLLCPQGTILEMND 1017

Query: 480  AVSKLFGYPVEDILRKPFTVFLEQN-TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
                  G  ++++  K          +P++       +      + +   T      + +
Sbjct: 1018 TACLASGKSMDELAGKYLWETYCWQLSPAIWQKCRAAVTRAAGGEPVNYETNIWLAGQTV 1077

Query: 539  LSLRIIIKKLPFSSCYSLTM----HDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
            + +   ++ L   +   + +    HD+S +KQ +  L  +++   + +       
Sbjct: 1078 VPIDFSVRPLFNDAGEVVLLIVEGHDLSSYKQMQQALQESEQRFREIAEKVDSLF 1132



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/460 (9%), Positives = 110/460 (23%), Gaps = 75/460 (16%)

Query: 183 IVHVNRVDNDPRALGKRL----DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKN 238
           +            +   L      +   ++ + +         + I    +     R   
Sbjct: 295 LAREVTPFGAQLQVLHHLYTLIPAELMAIYNVAEEPPLAVATSWLISGNATSEFDTRYPE 354

Query: 239 KVSSLTEYYAHKDDVLKTEKYPLLTSE-ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297
            +         +   L          E    LP Q++   +        +     Q++  
Sbjct: 355 TIPLQNCSEHERAQFLSAAVKAGRACESVCCLPIQQESRLLGYLLIADPRRHLLTQDDLA 414

Query: 298 ESFEYLSHRNHPSLSAYFDEGEN-----------LTPETVDKCPIPFFVYSH----GNL- 341
                        +     E              L    V+  P+   ++S       + 
Sbjct: 415 LLQRAAYLLADFRVRKELVEQLQVQTNQLTETNQLLSAIVESTPVGLALFSPKWQHDRIY 474

Query: 342 ----FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397
                + NP+ + LT       ++     + L   P+++       ++            
Sbjct: 475 DFAYQFTNPANVRLTGRS----LDQMRDNTLLTLFPEINQGGLFDKLVQTALTGQAQHFD 530

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC-- 455
                I+ +     A   +     +             +    +  +  +  +   L   
Sbjct: 531 EY---IRHDGMRMWAYFTLIRIGQD-------VLFTVQDITPQKEAEELLRHQNELLEKQ 580

Query: 456 ----------------SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR----- 494
                           +I+   + G A  + +GII   N A+  + GY   +++      
Sbjct: 581 VELRTNEIRHLNALQKAIINYAALGFAATDTQGIIQLINPALEVMTGYKAHELVGKVSPG 640

Query: 495 ---------KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
                    +             +         +     L++      K+  LL +   +
Sbjct: 641 VLRAPQTHQRLIQQLTPHLDDPTLEGDALVTAYVQEHTFLQRENTLQHKDGHLLPVLSTV 700

Query: 546 KKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKE 581
             L         Y   + DIS +KQ +     A    +  
Sbjct: 701 SGLYDEQGVLLGYVDFVTDISVFKQAQETAKKAYHRLQLA 740



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/322 (11%), Positives = 90/322 (27%), Gaps = 30/322 (9%)

Query: 293 QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLL 351
                     L  +     +        L    ++   + F      G +   NP+  ++
Sbjct: 566 AEELLRHQNELLEKQVELRTNEIRHLNALQKAIINYAALGFAATDTQGIIQLINPALEVM 625

Query: 352 TKYKSVD--------DIEIAGGLSTLLDAPKLSDNNAIKPV-MLYRSDRTCIAASARLHT 402
           T YK+ +         +        L+       ++       L  +         R +T
Sbjct: 626 TGYKAHELVGKVSPGVLRAPQTHQRLIQQLTPHLDDPTLEGDALVTAYVQEHTFLQRENT 685

Query: 403 IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
           +Q    + L +        ++    +       +    +  +   +    +L    +   
Sbjct: 686 LQHKDGHLLPVLSTVSGLYDEQGVLLGYVDFVTDISVFKQAQETAKKAYHRLQLAADTAG 745

Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVED--ILRKPFTVFLEQNTPSVMNHYLTEILSLD 520
            GI   +      S +  + ++ G   +   +  + F+  +            +  L+  
Sbjct: 746 LGIWEYDLATEKFSLDDQMYRICGIDNQHMPLDAELFSNLIHPADRERFQQAKSYALANK 805

Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKK 576
           L  +L    L      +L+   + ++ L             + D +  +Q +  L     
Sbjct: 806 LTSSLNFRLL--QPSGQLVYGEMRMQPLLDEHQQPIQLIGVVQDRTAQRQTELAL----- 858

Query: 577 IAEKESSHKSDFLARVS--HEI 596
                   K  +LA V+  HEI
Sbjct: 859 -----QRSKERYLALVNNLHEI 875



 Score = 40.4 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/184 (7%), Positives = 49/184 (26%), Gaps = 9/184 (4%)

Query: 69   DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID 128
            +SE  F          F            ++    +  G     +       +     ++
Sbjct: 1116 ESEQRFREIAEKVDSLFWIREGGSPRFSYVNPMYERITGRSCESLYEDPTSFL--DFVVE 1173

Query: 129  PNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNR 188
             +  +   L + +  Y     +           ++          +    R  G+     
Sbjct: 1174 EDRPMLLQLLKLDQPYDGPIHFQARIAGKIRWFEIRGFFTKDATGKVV--RHIGVGQDVT 1231

Query: 189  VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA 248
               + + + +   ++   L+++K    S+          ++P   ++  +++        
Sbjct: 1232 SQMENKQVMEAALEREQALNKLKSLFVSMASH-----QFRTPLMTIQSSSELIEFLVNQD 1286

Query: 249  HKDD 252
            + D 
Sbjct: 1287 NTDQ 1290


>gi|85704547|ref|ZP_01035649.1| two-component hybrid sensor and regulator [Roseovarius sp. 217]
 gi|85670955|gb|EAQ25814.1| two-component hybrid sensor and regulator [Roseovarius sp. 217]
          Length = 530

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 85/532 (15%), Positives = 183/532 (34%), Gaps = 35/532 (6%)

Query: 281 NQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN 340
              +           +      L   +   +     E E +         +     S G 
Sbjct: 24  AIASLSLLLVGTLGLAVYRRNQLLKLHAERVQKQGQEIELIYTALNRHALVS-LTDSGGV 82

Query: 341 LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400
           +   N +F     Y + + +     +      P  + +   +            +     
Sbjct: 83  ITSVNENFSGRYGYLNSELVGKPISI----IYPDGASDAVYRAARKSLVTGDIWSGENEE 138

Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
                   + +          +     +    I  ++ D    ++        L ++ + 
Sbjct: 139 IA---ADGSRIYTRCTLVPVMDDHGHLVRTVEIRTDNTDFHRAEQA-----RFLKALFDH 190

Query: 461 TSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL 519
             D + I       ++  N A  +  G+  +D++ K                ++  + S 
Sbjct: 191 LQDEVYIFCVESLDMVYANHAALRASGWKAKDLVDKTVLDADPNMNEKYFRAHVAPLFSG 250

Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-YSLTMHDISEWKQEKNKLSHAKKIA 578
           +       +  G T  E    +   I +    +  +   + D +E KQ +          
Sbjct: 251 EKEVVSIDVRRGETSGE----ISTRIVRGEDGNMLFVSVLRDSTERKQIE---------- 296

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
                 K + ++ VSHE+RTPLT+I G   ++ +   G   +P+     +   R+ + +L
Sbjct: 297 ----RAKMESVSIVSHELRTPLTSIHGSLRLLDSGALGTF-DPKAQSVLDIAVRNTDRLL 351

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
            +V+D+LD+ K  +GKM +    V L   V EA+ + + Y ++  +            I 
Sbjct: 352 LVVDDILDLEKFRAGKMPIEKVHVDLVSLVGEAVEINKGYGSDLHVSFAFETDLETAPIF 411

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
                + Q+  N+LSNA  ++P+ G + +           + V D G G+         +
Sbjct: 412 VAPERMMQVLANLLSNAAKYSPTHGTVRVGLR-EDGRFWQISVADDGPGIPEEMRASVFE 470

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            F ++P+   +  +GTGLG+ +++ +V A+ G+    S    G+   I  P+
Sbjct: 471 SFSKLPSLDGVTRKGTGLGMTISQKIVQAHDGEIGFDSEVGNGSTFFIRLPM 522



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 40/122 (32%), Gaps = 6/122 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147
            D+ G +  ++E      G    +++G  +  +      D         L   + W G+ 
Sbjct: 77  TDSGGVITSVNENFSGRYGYLNSELVGKPISIIYPDGASDAVYRAARKSLVTGDIWSGEN 136

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                +G+ +Y    L  +P+   +      R   I   N   +      + L   F HL
Sbjct: 137 EEIAADGSRIYTRCTL--VPVMDDHGHLV--RTVEIRTDNTDFHRAEQA-RFLKALFDHL 191

Query: 208 HE 209
            +
Sbjct: 192 QD 193


>gi|229101717|ref|ZP_04232434.1| hypothetical protein bcere0019_8840 [Bacillus cereus Rock3-28]
 gi|228681665|gb|EEL35825.1| hypothetical protein bcere0019_8840 [Bacillus cereus Rock3-28]
          Length = 883

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 77/341 (22%), Positives = 149/341 (43%), Gaps = 24/341 (7%)

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            +D++++            +    +  +L      T E        + +   L++  ++L
Sbjct: 382 HQDLIQQTVDNLGLTIHSIIGRMRIQTLLHESQAMTEELQVQSEELQTQAEELQMQAEEL 441

Query: 549 PFSSCYSLTMHDISEWKQEK-----NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
             ++    +  + +E K        ++L        + S +KS+FLA +SHE+RTPL +I
Sbjct: 442 RTTNEQLESRTEEAEQKTADLQITKSELEEKASELLRSSKYKSEFLANMSHELRTPLNSI 501

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +  SE+++      L +    E A  I  SG  +L ++ND+LD+SK+E+GK+++ FE  +
Sbjct: 502 LLLSEMLRENHDNNLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDIIFEATN 560

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSG 722
           + +  +         A +K +      ++ IP +   D + ++QI  N+LSNA  FT  G
Sbjct: 561 ISDMAASMHQNFLHIAAQKNVEFTVEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKG 620

Query: 723 GQIIISTTHTS--------------NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
               +S                    + + + V+DTG+G+   + +   + F Q   +  
Sbjct: 621 S---VSLHFNPIETTNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGATI 677

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            +  GTGLGL + K       G   + S   +G+   +  P
Sbjct: 678 RKYGGTGLGLSICKEFARLLGGWITLESNVGEGSTFTVYIP 718


>gi|170025068|ref|YP_001721573.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Yersinia pseudotuberculosis YPIII]
 gi|169751602|gb|ACA69120.1| integral membrane sensor hybrid histidine kinase [Yersinia
           pseudotuberculosis YPIII]
          Length = 957

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 95/371 (25%), Positives = 160/371 (43%), Gaps = 29/371 (7%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
             ++E        I+ +   GI+I+   +G  + +N                  +   L 
Sbjct: 359 ALRLEEHEQFNRKIVASAPVGISILRISDGTNILSNELA-------------HNYISLLT 405

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
                     +T I+       ++ +    T     L +  +  +          + D+S
Sbjct: 406 NED----RERITRIICERQANFVDVM----TSNNNNLQISFVHSRYRNEDVAICVLVDVS 457

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
              + +  L      AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R
Sbjct: 458 ARVKMEESLQEMATAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPQGVDR 516

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                  ++ S  L+L I++D+LD SKIES ++ +     S  E ++   +       +K
Sbjct: 517 ---LVTAMNNSSGLLLKIISDILDFSKIESEQLKIEPSEFSTVEVITHITANYLPLVVKK 573

Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
           R+ +      ++PR I  D   ++Q+  N+L+NAI FT +G  II+         +  RV
Sbjct: 574 RLGLYCFIEPDVPRLIEGDPVRLQQVISNLLNNAIKFTDTG-CIILQVRVRD-CYLEFRV 631

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
           RDTGVG+ + E+ +   PF Q+    Q   +GTGLGL + + +V+   G   + S    G
Sbjct: 632 RDTGVGIDSREINQLFDPFFQVGTGVQRHFQGTGLGLAICEKLVNLMDGDVEVISELGMG 691

Query: 802 TLIEIIFPLYD 812
           ++  I  PLY 
Sbjct: 692 SIFAIRIPLYH 702


>gi|213416867|ref|ZP_03350011.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 735

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 87/333 (26%), Positives = 154/333 (46%), Gaps = 17/333 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +FG+ +   +  P    +               L   +   +             +++ +
Sbjct: 59  IFGWRLMRDVTGPIRNMVNTVDR-----IRRGQLDSRVEGFMLGELDMLKNGINSMAMSL 113

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 114 AAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTP 173

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+ +          NP   ++ N I+RS N +L I+ND+LD SK+E+GK+ L  
Sbjct: 174 LNGVIGFTRLTLKTEL----NPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILES 229

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P  L   + E ++L+   +++K + +  +  N++P  ++ D   ++Q+  N++ NAI F
Sbjct: 230 IPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPENVIGDPLRLQQVITNLVGNAIKF 289

Query: 719 TPSGGQ-IIISTTHTSNEEVILRV--RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T SG   I++     SN +V + V  RDTG+G+   +  +  + F Q   S   R  GTG
Sbjct: 290 TESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTG 349

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           LGL + + +V+   G     S P +G+      
Sbjct: 350 LGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 382


>gi|156743019|ref|YP_001433148.1| multi-sensor signal transduction histidine kinase [Roseiflexus
           castenholzii DSM 13941]
 gi|156234347|gb|ABU59130.1| multi-sensor signal transduction histidine kinase [Roseiflexus
           castenholzii DSM 13941]
          Length = 616

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 82/374 (21%), Positives = 153/374 (40%), Gaps = 32/374 (8%)

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL--EQNTPSVMNHYLT 514
           +L++ SDG+  ++ +G I+  NRA   + G P   I+ K     +       +     + 
Sbjct: 241 VLQSMSDGVIAVDEQGRIIEVNRAAQTMIGLPASQIIGKHAREVIVQWPEVVARYRDMVE 300

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL--PFSSCYSLTMHDISEWKQEKNKLS 572
               ++++   E+         +  +++I                  D++  +  + +L 
Sbjct: 301 VAEEIEVKVGAER---------RWFNVQISPIYDARRAYRGRLFVWRDVTGERLIREELR 351

Query: 573 HAKKIAEKESSH--------------KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
              +   +                  KS FLA +SHEIRTPLTAI+G+ + +        
Sbjct: 352 RNNERLLEAQQALTSALRAAEEGNRVKSVFLAHMSHEIRTPLTAIMGYCQ-LLEAGIERQ 410

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
              +       I  +   +L + N++L+++ IE+G+  +H     + + V + I+ VQ  
Sbjct: 411 NLAQTRADLEAIRVASGHLLSLANNVLEMAWIEAGRSEVHDIAFEVMDVVLDVIATVQPL 470

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE--- 735
               R  +R   A +   +  D   V+QI LN++SNA  FT +GG++ +   H  +    
Sbjct: 471 IRRNRNHLRVEGAEHAGVVQGDPAKVRQILLNLVSNAAKFT-TGGEVAVRVAHIGDALQP 529

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            +  +V DTG G+    +E+   PF            G GLGL +++       G   I 
Sbjct: 530 RIQFQVSDTGSGIAPDRIERLFMPFAIAEEHVGRDQRGVGLGLAISRYYCRLMGGDLSIE 589

Query: 796 STPAKGTLIEIIFP 809
           S   +GT +    P
Sbjct: 590 SALGRGTTVTFWIP 603



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/247 (11%), Positives = 66/247 (26%), Gaps = 14/247 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D  G + E++      IG  A ++IG    +V             +++ R         
Sbjct: 252 VDEQGRIIEVNRAAQTMIGLPASQIIGKHAREVIVQWP--------EVVARYRDMVEVAE 303

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK----RLDKKF 204
              ++        ++   PIY   R + G R F +      +   R   +    RL +  
Sbjct: 304 EIEVKVGAERRWFNVQISPIYDARRAYRG-RLF-VWRDVTGERLIREELRRNNERLLEAQ 361

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
             L    +      + K    +  S      +   +       A  +     +    L +
Sbjct: 362 QALTSALRAAEEGNRVKSVFLAHMSHEIRTPLTAIMGYCQLLEAGIERQNLAQTRADLEA 421

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
              +           L     +     + + + E  + +                +L  E
Sbjct: 422 IRVASGHLLSLANNVLEMAWIEAGRSEVHDIAFEVMDVVLDVIATVQPLIRRNRNHLRVE 481

Query: 325 TVDKCPI 331
             +   +
Sbjct: 482 GAEHAGV 488



 Score = 43.1 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 10/154 (6%), Positives = 31/154 (20%), Gaps = 15/154 (9%)

Query: 313 AYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
              +         +         V   G +   N +   +    +   I           
Sbjct: 229 RLLEIRPIARDMVLQSMSDGVIAVDEQGRIIEVNRAAQTMIGLPASQIIGK--------- 279

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
                       V+    D   +A    +                     +       + 
Sbjct: 280 -HAREVIVQWPEVVARYRDMVEVAEEIEV----KVGAERRWFNVQISPIYDARRAYRGRL 334

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465
            +  +    R+ + ++     +L    +A +  +
Sbjct: 335 FVWRDVTGERLIREELRRNNERLLEAQQALTSAL 368


>gi|88807439|ref|ZP_01122951.1| multi-sensor signal transduction histidine kinase [Synechococcus
           sp. WH 7805]
 gi|88788653|gb|EAR19808.1| multi-sensor signal transduction histidine kinase [Synechococcus
           sp. WH 7805]
          Length = 683

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 78/450 (17%), Positives = 179/450 (39%), Gaps = 42/450 (9%)

Query: 393 CIAASARLHTIQ-WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV 451
                  L  ++     +  A    P                    V    N  +++   
Sbjct: 239 TRPVKELLRGVRSIADGDFRARIGHPVGGELGELLEGFNAMASQLQVYDAANIEELQAAQ 298

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
           ++  S++   +DG  +++ +G I+  N    +LF +   ++  + F   L +     ++ 
Sbjct: 299 VKQASLIATMADGAVLLDGDGRIVLANPTARRLFRWEGRNLEGQDFLNELPELLAVELHE 358

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISEWKQEKNK 570
            +  + S        + ++G         L+ + +    +    ++T+ D++        
Sbjct: 359 PIEAVSSNRTDTNELRSSIGDPPRTLRFVLQAVREPSGETLKGLAVTIQDLTR------- 411

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
                    + ++ +S F++ VSHE+RTPL  I  + E + +     L +    ++    
Sbjct: 412 -------EVELNAAQSRFISNVSHELRTPLFNIKSYVETLHD-MGDQLSDEDRRDFLGIA 463

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
           +   + +  +VND+LD+S++ES + ++ F P+ L   + + +   QL A++K++ +    
Sbjct: 464 NSETDRLTRLVNDVLDLSRLESNR-SVTFTPIELRPGLEQTLRSYQLNASDKQVDLSLEA 522

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE--------------- 735
             ++P IL +   + Q+  N++ NA+ F   GGQ++I      +                
Sbjct: 523 DPDLPDILGNWDLLLQVFDNLVGNALKFNRKGGQLLIRAYTWPDSCQMTPPQQENEWPTC 582

Query: 736 -------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                   + + + DTG G++    ++  + F ++ N+      GTGLGL + + +++ +
Sbjct: 583 PLTSPLPRMRVEICDTGYGISPENQQRIFERFYRVENAVHTEV-GTGLGLSIVRGILEKH 641

Query: 789 MGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
                + S    GT      PL     P +
Sbjct: 642 GSDVRMASELDVGTTFWFDLPLAQED-PEE 670


>gi|288871335|ref|ZP_06117244.2| sensory box histidine kinase/response regulator [Clostridium
           hathewayi DSM 13479]
 gi|288863842|gb|EFC96140.1| sensory box histidine kinase/response regulator [Clostridium
           hathewayi DSM 13479]
          Length = 894

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 80/293 (27%), Positives = 131/293 (44%), Gaps = 23/293 (7%)

Query: 536 EKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
                +   +        + L        K+    L   K+ AE  S  KSDFL+++SHE
Sbjct: 332 GIFFVVFATVIT------FFLLFR--RSEKRSNELLRLEKERAEAASRAKSDFLSQMSHE 383

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           IRTPL  I+G  E +        G  R     + I  S   +L ++ND+LD+SKIESGK+
Sbjct: 384 IRTPLNGIMGMVE-LGKNHIDEPG--RMRNCLDKITFSSTHLLSLINDILDMSKIESGKI 440

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSN 714
            LH E   L + +    ++  + A  ++I  +      +   ++ D   + QI  N+LSN
Sbjct: 441 ELHPELFDLGKLLRALTTVFHVQAINRQIDFQIFLRGEVTEYLVGDALRLNQILTNLLSN 500

Query: 715 AIHFTPSGGQII--ISTTHTSNEEV--ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           A+ FTP+ G +   I T    +  +     V+DTG G+    + +  +PF Q  +     
Sbjct: 501 AVKFTPAQGSVNLNIETLRRDDHRIWLRFEVKDTGRGIAPENIHRIFEPFTQENSGIARN 560

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP-------LYDTSHP 816
             GTGLGLP+ ++  +   G   + S    G++  +  P       +Y  + P
Sbjct: 561 YGGTGLGLPITRSFTEMMGGSITVSSEVGTGSVFTVDLPFDCAPDDVYKDAQP 613


>gi|94263431|ref|ZP_01287244.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
 gi|93456161|gb|EAT06300.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
          Length = 569

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 80/438 (18%), Positives = 168/438 (38%), Gaps = 44/438 (10%)

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
           L   + +  +    +   +        +        + F        +      T+    
Sbjct: 151 LLLLEYSQYSFDILITAPRPAASLERLLNLFAINGLSFFLVAALAALLAGRLYRTQEALS 210

Query: 446 KMEIEVMQL----CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
           +      +L      I +  + GI  I+  G I S NRA  ++ GY   ++  +    F 
Sbjct: 211 RTADRYDRLNILYKQIFDDITTGIVTIDDAGRITSFNRAAEEITGYRTGEVEGRQLAQFF 270

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP----FSSCYSLT 557
                          ++   +         + K+   + +     +L       S Y L+
Sbjct: 271 PNIE-----------VAGAEKMGQRAEIELARKDSATIPVGYSWSRLRRAAPGESHYILS 319

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
           + D+S+ +  + ++  ++K+A        +  A ++HE R PL AI G ++++  +    
Sbjct: 320 IQDLSQLRAMEARIRQSEKMA-----AVGEMAAGIAHEFRNPLAAISGSTQLLAQRLKEQ 374

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
            G  +       I+R  + +   VND L  S+  S       +   L + + E++++++ 
Sbjct: 375 PGQEQ---LLQIINRECDRLEAAVNDFLLFSRPAS----PRPQWHHLQQLLDESLAVIRQ 427

Query: 678 Y-ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
             A  ++         + P + AD   +KQ+ +N+L+NA    PSGG I  +       +
Sbjct: 428 TPAWSQQHRFTWDLPAD-PMVWADGDQLKQVLINLLANACQAMPSGGTIHGAAHRRQPGD 486

Query: 737 -----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
                +++ + D G G+      +  +P+         R +GTGLGL +   ++  + G+
Sbjct: 487 GQSPGLVIEISDDGPGIAPESQARIFEPYFTT------RQDGTGLGLAIVHQIIKGHGGE 540

Query: 792 FYIFSTPAKGTLIEIIFP 809
             + STP +GT   I+ P
Sbjct: 541 IELASTPGQGTTFTILLP 558



 Score = 46.2 bits (108), Expect = 0.025,   Method: Composition-based stats.
 Identities = 27/216 (12%), Positives = 58/216 (26%), Gaps = 20/216 (9%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL----LKRQN--- 141
           ID  G +   +    +  G    ++ G +L      + +     +G      L R++   
Sbjct: 237 IDDAGRITSFNRAAEEITGYRTGEVEGRQLAQFFPNIEVAGAEKMGQRAEIELARKDSAT 296

Query: 142 -----TWYGKTTLWPIEGTNLYVPIDLA------ALPIYSRNREFSGFRGFGIVHVNRVD 190
                +W       P E   +    DL+      A    S      G    GI H  R  
Sbjct: 297 IPVGYSWSRLRRAAPGESHYILSIQDLSQLRAMEARIRQSEKMAAVGEMAAGIAHEFRNP 356

Query: 191 NDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK 250
               +   +L  +       ++    +   + D            + ++ +S    + H 
Sbjct: 357 LAAISGSTQLLAQRLKEQPGQEQLLQIINRECDRLEAAVNDFL--LFSRPASPRPQWHHL 414

Query: 251 DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKK 286
             +L      +  +   S   +  +           
Sbjct: 415 QQLLDESLAVIRQTPAWSQQHRFTWDLPADPMVWAD 450



 Score = 43.1 bits (100), Expect = 0.20,   Method: Composition-based stats.
 Identities = 16/154 (10%), Positives = 43/154 (27%), Gaps = 10/154 (6%)

Query: 310 SLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
             +  +D    L  +  D        +   G +   N +   +T Y++ +       L+ 
Sbjct: 211 RTADRYDRLNILYKQIFDDITTGIVTIDDAGRITSFNRAAEEITGYRTGEVEGRQ--LAQ 268

Query: 369 LLDAPKLSDNNAIK---PVMLYRSDRTCIAASARLHTIQW--NRENSLAMTFIPFEKANQ 423
                +++    +     + L R D   I        ++     E+   ++     +   
Sbjct: 269 FFPNIEVAGAEKMGQRAEIELARKDSATIPVGYSWSRLRRAAPGESHYILSIQDLSQLRA 328

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
               + Q+       +  +           L +I
Sbjct: 329 MEARIRQSEKMAAVGE--MAAGIAHEFRNPLAAI 360


>gi|91211513|ref|YP_541499.1| sensory histidine kinase AtoS [Escherichia coli UTI89]
 gi|331647874|ref|ZP_08348966.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           M605]
 gi|91073087|gb|ABE07968.1| sensor protein AtoS [Escherichia coli UTI89]
 gi|331043598|gb|EGI15736.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           M605]
          Length = 612

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 83/371 (22%), Positives = 171/371 (46%), Gaps = 28/371 (7%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            + +         I+E  +DG+  I+R+G + + N A   + GY   +++ +P+++    
Sbjct: 258 AQALRETRTLNDLIIENAADGVIAIDRQGDVTTMNPAAEVITGYQRHELVGQPYSMLF-- 315

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMH 559
              +     + + L                ++ + + L +   ++  +        +   
Sbjct: 316 -DNTQFYSPVLDTLEHGTEHV-ALEISFPGRD-RTIELSVTTSRIHNTHGEMIGALVIFS 372

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           D++  K+ + +++ A+++A        + +A V+HE+R PLTAI G+ ++++ Q   P+ 
Sbjct: 373 DLTARKETQRRMAQAERLAT-----LGELMAGVAHEVRNPLTAIRGYVQILRQQTRDPI- 426

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
              + EY + + +  + +  ++  LL+ S+    +    ++ VSL+  V E + LVQ   
Sbjct: 427 ---HQEYLSVVLKEIDSINKVIQQLLEFSRPRHSQ----WQQVSLNALVEETLVLVQTAG 479

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
            + R+   +   N +  I AD   +KQ+ LNIL NA+    + G+I I T   S+ +  +
Sbjct: 480 VQARVDFISELDNELSPINADRELLKQVLLNILINAVQAISARGKIRIRTWQYSDSQQAI 539

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            + D G G+     +K   PF     S      GTGLGL L++ +++A+ G   + S P 
Sbjct: 540 SIEDNGSGIDLSLQKKIFDPFFTTKAS------GTGLGLALSQRIINAHQGDIRVASLPG 593

Query: 800 KGTLIEIIFPL 810
            G    +I P+
Sbjct: 594 YGATFTLILPI 604



 Score = 40.4 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/117 (10%), Positives = 37/117 (31%), Gaps = 6/117 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G +  ++       G    +++G     +    +    + + D L+          
Sbjct: 282 IDRQGDVTTMNPAAEVITGYQRHELVGQPYSMLF--DNTQFYSPVLDTLEHGTEHVALEI 339

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
            +P     + + +  +   I++ + E  G     I        + +    + ++  +
Sbjct: 340 SFPGRDRTIELSVTTS--RIHNTHGEMIGA--LVIFSDLTARKETQRRMAQAERLAT 392


>gi|146279078|ref|YP_001169237.1| multi-sensor hybrid histidine kinase [Rhodobacter sphaeroides ATCC
           17025]
 gi|145557319|gb|ABP71932.1| PAS/PAC sensor hybrid histidine kinase [Rhodobacter sphaeroides
           ATCC 17025]
          Length = 850

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 105/601 (17%), Positives = 200/601 (33%), Gaps = 26/601 (4%)

Query: 220 EKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTIN 279
                   +      R+  K+      +             L         +      + 
Sbjct: 2   AARRETDVRRAESGPRLWQKLRLPAAVFVVLAGASVILALALDARRRFEQLDLMASGGVQ 61

Query: 280 LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK--CPIPFFVYS 337
                       L        +        ++ A     + L            P +   
Sbjct: 62  AEIAVVDAGLKRLAGLLNPEGDASPGDTRAAIEALQAPIQQLGAALAQSALLWEPGYAAD 121

Query: 338 HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397
              L         L         +    L+  L   +   +         ++ R      
Sbjct: 122 MARLESFADEAAALIPAPDATLAQRRADLARTLPQQQEVLDRLASSASQDQAVRAAEDRE 181

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
              +++         M  +    A     +     +    + +R           +L +I
Sbjct: 182 IIANSL---------MRLVALTIALVLVLSAGALQLLRLYLRSREQADAARRASARLEAI 232

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP-FTVFLEQNTPSVMNHYLTEI 516
              ++D I + +  G ++  NRA   +FG+  E +       +             + E 
Sbjct: 233 FRISADAILVTDWSGRVIDCNRATLAIFGHQRERLCGADAMELLFPAELQGRQRTRVVEA 292

Query: 517 LSLDLRQ---TLEKITLGSTKEEKLLSLRIIIK--KLPFSSCYSLTMHDISEWKQEKNKL 571
           L     +    L         +     + + +   ++         M DIS  ++ + +L
Sbjct: 293 LRTSDPRLDGPLRLELEAVHADGLRFPVEVSLAAARVEGEDIIVALMRDISARRRAEREL 352

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
           + A+  A      ++DFLA +SHE+RTPL  + G  E++         + R  E  + + 
Sbjct: 353 TEARDQALAGEQARADFLAVMSHEMRTPLNGLAGSVELLDQTPL----DMRQRELVSVLR 408

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN--EKRILIRTS 689
            S  ++LD VN +LDI++ E+           LD  V+E I+    +A     RI +R +
Sbjct: 409 ASAQILLDHVNSVLDIARSEARPSEAEMVDYDLDRLVAECIANQSGFAAVVGNRIDLR-A 467

Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749
               +  +  +   ++Q+ LN+L+NA+ FT   G+II+ T       + +RV DTG+G+ 
Sbjct: 468 ITGPVGLLNGEPARLRQVILNLLNNAVKFT-RNGRIIVETEV-MGGTLEIRVLDTGIGIA 525

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
               EK    F  +  S + R  GTGLGL +A+ +     G   + S P  G+   +  P
Sbjct: 526 PENQEKIFDDFVTLDASYERRSGGTGLGLGIARRLARIMGGDLTVESAPGNGSRFTLRLP 585

Query: 810 L 810
           L
Sbjct: 586 L 586



 Score = 58.1 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/331 (6%), Positives = 74/331 (22%), Gaps = 18/331 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID--PNNHIGDLLKRQNTWYGK 146
            D  G + + +       G+   ++ G    ++     +       + + L+  +     
Sbjct: 243 TDWSGRVIDCNRATLAIFGHQRERLCGADAMELLFPAELQGRQRTRVVEALRTSDPRLDG 302

Query: 147 TTLWPIE---GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                +E      L  P++++         +        ++                  +
Sbjct: 303 PLRLELEAVHADGLRFPVEVSLAAARVEGEDII----VALMRDISARRRAERELTEARDQ 358

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE------ 257
                + +    +V   +              +      + +           +      
Sbjct: 359 ALAGEQARADFLAVMSHEMRTPLNGLAGSVELLDQTPLDMRQRELVSVLRASAQILLDHV 418

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
              L  +   + P + +    +L++   +         +              +     E
Sbjct: 419 NSVLDIARSEARPSEAEMVDYDLDRLVAECIANQSGFAAVVGNRIDLRAITGPVGLLNGE 478

Query: 318 GENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
              L    ++          +G +        ++     +  ++   G++         D
Sbjct: 479 PARLRQVILNLLNNAVKFTRNGRIIV---ETEVMGGTLEIRVLDTGIGIAPENQEKIFDD 535

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
              +      RS  T +         +    
Sbjct: 536 FVTLDASYERRSGGTGLGLGIARRLARIMGG 566



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/348 (9%), Positives = 74/348 (21%), Gaps = 31/348 (8%)

Query: 133 IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192
           +   L  +  +          G    + +  A L   +      G    G          
Sbjct: 39  LALALDARRRFEQLDL-MASGGVQAEIAVVDAGLKRLAGLLNPEGDASPGDTRAAIEALQ 97

Query: 193 P--RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK 250
              + LG  L +             +  +   D  +   P P   +  + + L      +
Sbjct: 98  APIQQLGAALAQSALLWEPGYAADMARLESFADEAAALIPAPDATLAQRRADLARTLPQQ 157

Query: 251 DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310
            +VL          +     E  +    +L +         L  ++        +     
Sbjct: 158 QEVLDRLASSASQDQAVRAAEDREIIANSLMRLVALTIALVLVLSAGALQLLRLYLRSRE 217

Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
            +                      V    G +   N + L +  ++  + +  A  +  L
Sbjct: 218 QADAARRASARLEAIFRISADAILVTDWSGRVIDCNRATLAIFGHQR-ERLCGADAMELL 276

Query: 370 LDAPKLSDNNAIKPVMLY-----------------RSDRTCIAASARLHTIQWNRENSLA 412
             A             L                   +D         L   +   E+ + 
Sbjct: 277 FPAELQGRQRTRVVEALRTSDPRLDGPLRLELEAVHADGLRFPVEVSLAAARVEGEDIIV 336

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
                     +          E E  + R      E       +++  
Sbjct: 337 ALMRDISARRRA---------ERELTEARDQALAGEQARADFLAVMSH 375


>gi|39996107|ref|NP_952058.1| sensory box histidine kinase [Geobacter sulfurreducens PCA]
 gi|39982872|gb|AAR34331.1| sensory box histidine kinase [Geobacter sulfurreducens PCA]
 gi|298505123|gb|ADI83846.1| nitrogen fixation master sensor histidine kinase, PAS
           domain-containing [Geobacter sulfurreducens KN400]
          Length = 363

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 75/380 (19%), Positives = 157/380 (41%), Gaps = 36/380 (9%)

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
           E +   L +++++  DG+ +I+ +G I   N A  ++ G      +   F +        
Sbjct: 5   EKKEEFLATVIDSVGDGVIVIDLDGRIALMNPAAEEISGISRRQAVGHRFALVFH---RE 61

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL----PFSSCYSLTMHDISE 563
            +   +    +       +   +   K ++L  +      L      ++   L + DI+ 
Sbjct: 62  AVLREMVGKTATSGMTISDHENIVIRKLKQLTPVSATTFPLMLPHGETTGTILVLRDITS 121

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            ++ ++ + +A +++   +       A ++HEI+ PL  I G +++++ +          
Sbjct: 122 IRELEDAVRNADRLSTLGT-----LAAGLAHEIKNPLGGIKGAAQLLELEL---PTESEL 173

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            +    + +    V  IV +LL ++        L    V+L + + + ++L +     K 
Sbjct: 174 RDNVRIMLKEVERVNRIVEELLALASPRG----LQLSKVNLHKVIGDILTLQKRSTEGKN 229

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-----------T 732
           +  +  F  +IP ILAD   + Q+ LN++ NA+     GG I +++              
Sbjct: 230 VAFQQQFDPSIPPILADEGLLTQLFLNLVKNAMEAVDDGGCIRVASRVISDYSMTQKGER 289

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
            +  V + V D G G+    LE+   PF         + +GTGLGL + + +V  + G  
Sbjct: 290 RSRMVAIDVADDGPGIPPERLEQLFTPFFTT------KTKGTGLGLAICQKIVTEHRGMI 343

Query: 793 YIFSTPAKGTLIEIIFPLYD 812
            + S P KGT   ++ PL  
Sbjct: 344 KVESYPGKGTTFTVMLPLIQ 363



 Score = 46.9 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 29/301 (9%), Positives = 69/301 (22%), Gaps = 14/301 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G +  ++    +  G    + +G R   V     +     +G       T      
Sbjct: 25  IDLDGRIALMNPAAEEISGISRRQAVGHRFALVFHREAVLREM-VGKTATSGMTISDHE- 82

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
              I       P+     P+   + E +G     ++       +     +  D+  +   
Sbjct: 83  NIVIRKLKQLTPVSATTFPLMLPHGETTGT--ILVLRDITSIRELEDAVRNADRLSTLGT 140

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT----EYYAHKDDVLKTEKYPLLTS 264
                   ++     I                             + + +  E   L + 
Sbjct: 141 LAAGLAHEIKNPLGGIKGAAQLLELELPTESELRDNVRIMLKEVERVNRIVEELLALASP 200

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
               L +      I      +K+         ++ F+                  NL   
Sbjct: 201 RGLQLSKVNLHKVIGDILTLQKRSTEGKNVAFQQQFDPSIPPILADEGLLTQLFLNLVKN 260

Query: 325 TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
            ++       V   G +  A+      +  +  +       +    D P +      +  
Sbjct: 261 AMEA------VDDGGCIRVASRVISDYSMTQKGERRSRMVAIDVADDGPGIPPERLEQLF 314

Query: 385 M 385
            
Sbjct: 315 T 315


>gi|209523205|ref|ZP_03271761.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
 gi|209496356|gb|EDZ96655.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
          Length = 1366

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 77/243 (31%), Positives = 134/243 (55%), Gaps = 7/243 (2%)

Query: 570  KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
            +L  AK+ A+  +  KS+FLA +SHE+RTPL AI+GF++ +  Q  G     +  +Y   
Sbjct: 885  QLQQAKEAADTANRAKSEFLANMSHELRTPLNAILGFTQ-LLGQNSG--LTSQQQDYLQI 941

Query: 630  IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
            I +SG  +L ++N++LD+SKIE+G + L+    +L   +    +++Q+ A+ K +++   
Sbjct: 942  IQQSGKYLLSLINEVLDLSKIEAGTVTLNPTNFNLRTLLERINTMLQIKASSKNLVLDIQ 1001

Query: 690  FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN-EEVILRVRDTGVG 747
               +IP  +  D   ++Q+ +N+L NAI FT +G  + +  +  S+  ++   V DTG G
Sbjct: 1002 LDQDIPDYVKTDESKLRQVLVNLLDNAIKFTDAG-YVTLRGSFVSSVSQLYFEVEDTGPG 1060

Query: 748  MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
            +T  E E+  +PF Q    +    +GTGLGL +++  V+   GK  I S    G      
Sbjct: 1061 ITPDEQERLFQPFVQTDVGR-RHQQGTGLGLAISQQYVNLMGGKITIVSVVDGGAKFMFN 1119

Query: 808  FPL 810
             P+
Sbjct: 1120 LPV 1122



 Score =  101 bits (252), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 34/271 (12%), Positives = 87/271 (32%), Gaps = 35/271 (12%)

Query: 319 ENLTPETVDKCPIPFFVYSHGNL--FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
                  ++  P   ++Y   +L   Y N   + +      +D+   G            
Sbjct: 170 PKFIKTIINSFPKLIYIYDVKSLKNIYVNQQLIKILGLTP-EDLHNLG--DRFYWEQIHP 226

Query: 377 DNNAIKPVML----YRSDRTCIAASARLHTIQWNRENSLAMTFIPFE-KANQFPENMPQN 431
           D+  I   +L      S+   +    RL   +    +   +         +     +   
Sbjct: 227 DDLPILETILEQVSALSEGEVLDIEYRL---RHKNGSYRWLRSQEVPFTKDANGLAVQVL 283

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
           G   +    ++ + +++    +L  I  + SD I +++ +GII + N A   LFG   E+
Sbjct: 284 GTAQDITSHKLIESQLQESEARLQIIFNSISDSILMVDCQGIIHAVNPAGLNLFGRTSEE 343

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
           ++     + +     +                           +  L+ + + + +  + 
Sbjct: 344 LINHHLGLPITVGNVA--------------------ELGIINPKRGLVMVEMTVAETEWL 383

Query: 552 SC--YSLTMHDISEWKQEKNKLSHAKKIAEK 580
               Y +   DI+E  + +  L  +++   +
Sbjct: 384 QRPFYVVCFRDITERCKTQEALQESEERFSQ 414



 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 43/423 (10%), Positives = 108/423 (25%), Gaps = 48/423 (11%)

Query: 229 SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKK-Q 287
           +P     + ++      +      +    +     SE   L  +      N +    + Q
Sbjct: 208 TPEDLHNLGDRFYWEQIHPDDLPILETILEQVSALSEGEVLDIEYRLRHKNGSYRWLRSQ 267

Query: 288 YFGTLQNNSKESFEYLSHRNHPSL----SAYFDEGENLTPETVDKCPIPF-FVYSHGNLF 342
                ++ +  + + L      +      +   E E       +        V   G + 
Sbjct: 268 EVPFTKDANGLAVQVLGTAQDITSHKLIESQLQESEARLQIIFNSISDSILMVDCQGIIH 327

Query: 343 YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT 402
             NP+ L L    S + I    GL   +          +  + +    R  +     +  
Sbjct: 328 AVNPAGLNLFGRTSEELINHHLGLPITVGN--------VAELGIINPKRGLVMVEMTVAE 379

Query: 403 IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
            +W +     + F                    +  +    +  ++    +   ++    
Sbjct: 380 TEWLQRPFYVVCFR-------------------DITERCKTQEALQESEERFSQVVNHIQ 420

Query: 463 DGIAIINREG-IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
           D   + +  G  +   + A  K++G   + +   P +   E   P  +   +      + 
Sbjct: 421 DVFWLTSPRGDKLFYISPAYEKIWGRSCQSVYDDPGSWL-EAVHPDDLQSVIVNFSDQEY 479

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKI 577
            Q+             +L +      +       +       DI+  K+ +  L    + 
Sbjct: 480 AQSSFIEYRIFRPNGDVLWICDRAFPIKNERGDVVRVARIAEDITNRKKTEEHLRQQAER 539

Query: 578 AEKESSH---------KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
                             D L    +E+R  L           +Q    + +   +    
Sbjct: 540 EHLLYQLTLHISQSLNLDDILQNTVNELRHLLNLDRVLILRCHDQNLATVTHESIVPGIE 599

Query: 629 YID 631
            I 
Sbjct: 600 TIR 602



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/366 (9%), Positives = 98/366 (26%), Gaps = 29/366 (7%)

Query: 96  KEISEELPKTIGNYAFKM--IGMRL-CDVSDILHIDPNNHIGD---LLKRQNTWYGKTTL 149
             ++++L K +G     +  +G R   +      +     I +    L        +  L
Sbjct: 195 IYVNQQLIKILGLTPEDLHNLGDRFYWEQIHPDDLPILETILEQVSALSEGEVLDIEYRL 254

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
               G+  Y  +    +P ++++      +  G            +  +  + +   +  
Sbjct: 255 RHKNGS--YRWLRSQEVP-FTKDANGLAVQVLGTAQDITSHKLIESQLQESEARLQIIFN 311

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
                  +   +  I +      +L  +     +  +      V    +  ++  +   +
Sbjct: 312 SISDSILMVDCQGIIHAVNPAGLNLFGRTSEELINHHLGLPITVGNVAELGIINPKRGLV 371

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
             +         Q                   +              E E    + V+  
Sbjct: 372 MVEMTVAETEWLQRPFY------------VVCFRDITERCKTQEALQESEERFSQVVNHI 419

Query: 330 PIPFFVY--SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
              F++       LFY +P++  +         +  G            D+     V   
Sbjct: 420 QDVFWLTSPRGDKLFYISPAYEKIWGRSCQSVYDDPGS----WLEAVHPDDLQSVIVNF- 474

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
            SD+    +S   + I     + L +    F   N+  + +    I  +  + +  +  +
Sbjct: 475 -SDQEYAQSSFIEYRIFRPNGDVLWICDRAFPIKNERGDVVRVARIAEDITNRKKTEEHL 533

Query: 448 EIEVMQ 453
             +  +
Sbjct: 534 RQQAER 539


>gi|23502947|ref|NP_699074.1| sensory box histidine kinase [Brucella suis 1330]
 gi|161620011|ref|YP_001593898.1| histidine kinase [Brucella canis ATCC 23365]
 gi|225853527|ref|YP_002733760.1| histidine kinase [Brucella melitensis ATCC 23457]
 gi|254700729|ref|ZP_05162557.1| histidine kinase [Brucella suis bv. 5 str. 513]
 gi|254705101|ref|ZP_05166929.1| histidine kinase [Brucella suis bv. 3 str. 686]
 gi|254707383|ref|ZP_05169211.1| histidine kinase [Brucella pinnipedialis M163/99/10]
 gi|254709075|ref|ZP_05170886.1| histidine kinase [Brucella pinnipedialis B2/94]
 gi|256030600|ref|ZP_05444214.1| histidine kinase [Brucella pinnipedialis M292/94/1]
 gi|256045702|ref|ZP_05448580.1| histidine kinase [Brucella melitensis bv. 1 str. Rev.1]
 gi|256112422|ref|ZP_05453343.1| histidine kinase [Brucella melitensis bv. 3 str. Ether]
 gi|256158596|ref|ZP_05456486.1| histidine kinase [Brucella ceti M490/95/1]
 gi|256254007|ref|ZP_05459543.1| histidine kinase [Brucella ceti B1/94]
 gi|256262989|ref|ZP_05465521.1| histidine kinase [Brucella melitensis bv. 2 str. 63/9]
 gi|256370497|ref|YP_003108008.1| sensory box histidine kinase, putative [Brucella microti CCM 4915]
 gi|260169506|ref|ZP_05756317.1| sensory box histidine kinase, putative [Brucella sp. F5/99]
 gi|260563004|ref|ZP_05833490.1| histidine kinase [Brucella melitensis bv. 1 str. 16M]
 gi|260567429|ref|ZP_05837899.1| histidine kinase [Brucella suis bv. 4 str. 40]
 gi|261759034|ref|ZP_06002743.1| histidine kinase [Brucella sp. F5/99]
 gi|23348982|gb|AAN30989.1| sensory box histidine kinase, putative [Brucella suis 1330]
 gi|161336822|gb|ABX63127.1| histidine kinase [Brucella canis ATCC 23365]
 gi|225641892|gb|ACO01806.1| histidine kinase [Brucella melitensis ATCC 23457]
 gi|256000660|gb|ACU49059.1| sensory box histidine kinase, putative [Brucella microti CCM 4915]
 gi|260153020|gb|EEW88112.1| histidine kinase [Brucella melitensis bv. 1 str. 16M]
 gi|260156947|gb|EEW92027.1| histidine kinase [Brucella suis bv. 4 str. 40]
 gi|261739018|gb|EEY27014.1| histidine kinase [Brucella sp. F5/99]
 gi|263092862|gb|EEZ17037.1| histidine kinase [Brucella melitensis bv. 2 str. 63/9]
          Length = 859

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 131/724 (18%), Positives = 263/724 (36%), Gaps = 49/724 (6%)

Query: 110 AFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN--TWYGKTTLWPIEGTNLYVPIDLAALP 167
              ++G                  G  L+ Q+        +    +     + ++     
Sbjct: 150 RADVVGQLPDACGAPQDRPAFLAFGRWLRPQSVTALERAISTLREQARAFDLTVETVNGS 209

Query: 168 IYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ 227
           +   +   SG  GF +    +     +A    L+ +   L +  +    +          
Sbjct: 210 LLDVHGRTSG--GFAVA-CFQSLQGVQAERASLEAQNRELADRIELMRRLLDRIEQPAWL 266

Query: 228 QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287
           +     +   N   +     A+    + +E   L  ++     E++ F    + +     
Sbjct: 267 RDGNGRIEWVNLAYAQAVDMANASQ-VISEGRELFGAQARQRLERDRFAEPVVQEQLTAV 325

Query: 288 YFGTLQ--------NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG 339
             G  +          S             ++            ET+D+      ++   
Sbjct: 326 VHGDRRVFDVIDVSAESGSVGLGFDLTEVQAVRDELSRTLKSHAETLDQLSTAVAIFDPE 385

Query: 340 -NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398
             L + N +F+ L     V  +E     + + D  +       +P      D    A  A
Sbjct: 386 MKLQFFNQAFVKLWGL-DVAWLETRPSNTLIFDRLRAEGKLPEQPEWRKWKDSLLSAYRA 444

Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI- 457
                    E    M  +P  +  +   N    G      +    K ++E     L  + 
Sbjct: 445 V--------EPEEHMWHLPDTRTMRVVANPHPQGGVTWFFENMTEKFELEGRYNTLIKVQ 496

Query: 458 ---LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYL 513
              L+  ++ +A+   +G +  +N + + L+  P E +      ++  +       +   
Sbjct: 497 GETLDHLAEAVAVFGSDGRLRLSNPSFAALWSLPSEMVREGTHISIIAKLCNQRGGDGLW 556

Query: 514 TEILSLDLRQTLEKITL---GSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570
            + +S       ++          +  +LS  ++           LT  D+++  + +  
Sbjct: 557 EDFVSTVTGFLDQRDGRMGQVELSDGAILSFAVVPLP---KGQTMLTFIDVTDTVRVERA 613

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           L    +  E     K+DF+  VS+E+R+PLT IIGF+E+++   FG L N R +EY ++I
Sbjct: 614 LKEKNEALELADQIKNDFVQHVSYELRSPLTNIIGFTELLQTPAFGSL-NERQLEYLDHI 672

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
             S +++L IVND+LD++ +++G M L    VS+ EA+S A S V     +  I +    
Sbjct: 673 STSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEAISAAASRVSERLRDHNIGLDVDI 732

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
           A+++    AD   V+Q+  N+LSNA+++ P G  I++        +V+  V D G GM +
Sbjct: 733 ADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVLQVA-RDGADVVFAVHDDGHGMPS 791

Query: 751 YELEKAMKPFGQIPN-----SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
             L+   K F   PN        +          + K+ V+ + G+  I +   +GT + 
Sbjct: 792 EVLDTVFKRFQSYPNGGRRRGAGLGLA-------IVKSFVELHGGRVEIDTGEERGTTVI 844

Query: 806 IIFP 809
             FP
Sbjct: 845 CRFP 848


>gi|45440759|ref|NP_992298.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Yersinia pestis biovar Microtus str. 91001]
 gi|51595601|ref|YP_069792.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Yersinia pseudotuberculosis IP 32953]
 gi|45435617|gb|AAS61175.1| two component sensor kinase/response regulator protein RcsC
           [Yersinia pestis biovar Microtus str. 91001]
 gi|51588883|emb|CAH20497.1| two component sensor kinase/response regulator protein RcsC
           [Yersinia pseudotuberculosis IP 32953]
          Length = 957

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 95/371 (25%), Positives = 160/371 (43%), Gaps = 29/371 (7%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
             ++E        I+ +   GI+I+   +G  + +N                  +   L 
Sbjct: 359 ALRLEEHEQFNRKIVASAPVGISILRISDGTNILSNELA-------------HNYISLLT 405

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
                     +T I+       ++ +    T     L +  +  +          + D+S
Sbjct: 406 NED----RERITRIICERQANFVDVM----TSNNNNLQISFVHSRYRNEDVAICVLVDVS 457

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
              + +  L      AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R
Sbjct: 458 ARVKMEESLQEMATAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPQGVDR 516

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                  ++ S  L+L I++D+LD SKIES ++ +     S  E ++   +       +K
Sbjct: 517 ---LVTAMNNSSGLLLKIISDILDFSKIESEQLKIEPSEFSTVEVITHITANYLPLVVKK 573

Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
           R+ +      ++PR I  D   ++Q+  N+L+NAI FT +G  II+         +  RV
Sbjct: 574 RLGLYCFIEPDVPRLIEGDPVRLQQVISNLLNNAIKFTDTG-CIILQVRVRD-CYLEFRV 631

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
           RDTGVG+ + E+ +   PF Q+    Q   +GTGLGL + + +V+   G   + S    G
Sbjct: 632 RDTGVGIDSREINQLFDPFFQVGTGVQRHFQGTGLGLAICEKLVNLMDGDVEVISELGMG 691

Query: 802 TLIEIIFPLYD 812
           ++  I  PLY 
Sbjct: 692 SIFAIRIPLYH 702


>gi|317472683|ref|ZP_07931998.1| hsp90-like protein [Anaerostipes sp. 3_2_56FAA]
 gi|316899860|gb|EFV21859.1| hsp90-like protein [Anaerostipes sp. 3_2_56FAA]
          Length = 940

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 79/274 (28%), Positives = 136/274 (49%), Gaps = 12/274 (4%)

Query: 539 LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
           +   + +  L  ++ + LT       K     +    + AE +S  KS+FL+++SHEIRT
Sbjct: 525 VLCLLAVIMLMAAAAFILTYR----SKMRSRIMQSELEKAEAKSRAKSEFLSQMSHEIRT 580

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
           P+ AI G +++++ +   P G     E    I  S   +L ++ND+LD+SKIE+GK+N+ 
Sbjct: 581 PMNAITGLTDLLRMEEKLPDG---AREKLQKIHASSQYMLSLINDILDMSKIENGKLNIE 637

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718
            E  SL E +   I ++++ A EK+I            +  D   ++Q+  N+LSNA  F
Sbjct: 638 PEDFSLTELLDGLIEMMEVQAEEKQIHFEFVREIEHDFVTGDPIRLRQVLTNLLSNAFKF 697

Query: 719 TPSGGQIIISTTHTSN----EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           T  GG++ ++           E    V+D G+G+     ++  + F Q+  S     EGT
Sbjct: 698 TKHGGRVTLTVREEHRDVSTGEYFFSVKDNGIGIAQDRQKQIFEAFEQLGASSARS-EGT 756

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           GLGLP++ +++ A  G   + S   KG+      
Sbjct: 757 GLGLPISSSIIKAMGGNLMVESQTGKGSEFYFRL 790


>gi|167748905|ref|ZP_02421032.1| hypothetical protein ANACAC_03679 [Anaerostipes caccae DSM 14662]
 gi|167651527|gb|EDR95656.1| hypothetical protein ANACAC_03679 [Anaerostipes caccae DSM 14662]
          Length = 940

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 79/274 (28%), Positives = 136/274 (49%), Gaps = 12/274 (4%)

Query: 539 LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
           +   + +  L  ++ + LT       K     +    + AE +S  KS+FL+++SHEIRT
Sbjct: 525 VLCLLAVIMLMAAAAFILTYR----SKMRSRIMQSELEKAEAKSRAKSEFLSQMSHEIRT 580

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
           P+ AI G +++++ +   P G     E    I  S   +L ++ND+LD+SKIE+GK+N+ 
Sbjct: 581 PMNAITGLTDLLRMEEKLPDG---AREKLQKIHASSQYMLSLINDILDMSKIENGKLNIE 637

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718
            E  SL E +   I ++++ A EK+I            +  D   ++Q+  N+LSNA  F
Sbjct: 638 PEDFSLTELLDGLIEMMEVQAEEKQIHFEFVREIEHDFVTGDPIRLRQVLTNLLSNAFKF 697

Query: 719 TPSGGQIIISTTHTSN----EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           T  GG++ ++           E    V+D G+G+     ++  + F Q+  S     EGT
Sbjct: 698 TKHGGRVTLTVREEHRDVSTGEYFFSVKDNGIGIAQDRQKQIFEAFEQLGASSARS-EGT 756

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           GLGLP++ +++ A  G   + S   KG+      
Sbjct: 757 GLGLPISSSIIKAMGGNLMVESQTGKGSEFYFRL 790


>gi|300311948|ref|YP_003776040.1| sensor histidine kinase/response regulator protein [Herbaspirillum
           seropedicae SmR1]
 gi|300074733|gb|ADJ64132.1| sensor histidine kinase/response regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 1145

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 78/276 (28%), Positives = 142/276 (51%), Gaps = 8/276 (2%)

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
            + +       +L + +I   KQ   +L  AK+ AE  +  KS F+A +SHE+RTPL +I
Sbjct: 647 AVAQEESERQTNLLLQEIEAHKQTDAELQRAKEAAESANLAKSRFVAGMSHELRTPLNSI 706

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +G+++++          P   +    I RSG  +L +++ LLDI+KIE+GKM L  + ++
Sbjct: 707 LGYAQIL---HVDATIPPARKDAIGVIRRSGEHLLSLIDGLLDIAKIEAGKMRLASDELA 763

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSG 722
           L+  + + + +    A +K +  R   +  +P+ + AD + ++QI +N+L NA+ FT  G
Sbjct: 764 LEAFLEQIVGMFAPQAEQKGLHFRFDKSGRLPQIVHADQKRLRQILINLLGNAVKFTDHG 823

Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
           G + +   + + E     V DTG+G+ + + E+   PF +   +      GTGLGL +++
Sbjct: 824 G-VTLRLRY-AREIAYFDVIDTGIGIADDDRERIFLPFERSSAANLREDIGTGLGLAISR 881

Query: 783 AMVDANMGKFYIFSTPAKGTLIE--IIFPLYDTSHP 816
            +V    G+  + S   +G+     I  P      P
Sbjct: 882 MLVHIMGGELSVQSQVGQGSSFHLKIYLPEVHVPRP 917


>gi|291612803|ref|YP_003522960.1| PAS/PAC sensor signal transduction histidine kinase [Sideroxydans
           lithotrophicus ES-1]
 gi|291582915|gb|ADE10573.1| PAS/PAC sensor signal transduction histidine kinase [Sideroxydans
           lithotrophicus ES-1]
          Length = 440

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 78/371 (21%), Positives = 154/371 (41%), Gaps = 29/371 (7%)

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
           + R  +++    + Q+     A  +G+ I++    I   N    + FG   +  + +  T
Sbjct: 85  ERRNERQQYAAALQQMEQATSALPEGVVILDEADRIEWCNLQAEQHFGLDGKRDIGQQIT 144

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM 558
                        YL             K  +     ++ L L I +     S    +  
Sbjct: 145 YL---ARQPEFVQYLAN-------DDFAKPLVLRGSRQEDLVLSIKLIAYGSSKR-LMIS 193

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            DI+ +++ +                + DF+A VSHE+RTPLT + GF E +++     L
Sbjct: 194 RDITHFERIET--------------MRRDFVANVSHELRTPLTVVNGFVETMQD--MPNL 237

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
            N         +    + +  +V+DLL +S++E+ +  L  E + + + +       +  
Sbjct: 238 ENDMARRALQLMGNQTSRMKSLVDDLLTLSRLENEQNALSEEDIDVQKLLHILHEEGRSL 297

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738
           +N +   IR    +    I      +     N+++NA+ +TP+GG I I  +   +  ++
Sbjct: 298 SNGQH-QIRLEIESEAG-ICGSASELHSAFGNLVTNAVRYTPAGGDIAIRWSEQPDGCMV 355

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
             V+D+G+G+    + +  + F ++  S+     GTGLGL + K +V  +  +  I S  
Sbjct: 356 FSVKDSGIGIEPQHISRLTERFYRVDRSRSRETGGTGLGLAIVKHIVMRHQAQLNIVSEE 415

Query: 799 AKGTLIEIIFP 809
            KG+   I+FP
Sbjct: 416 GKGSTFSIVFP 426


>gi|255034206|ref|YP_003084827.1| histidine kinase [Dyadobacter fermentans DSM 18053]
 gi|254946962|gb|ACT91662.1| histidine kinase [Dyadobacter fermentans DSM 18053]
          Length = 1200

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 85/312 (27%), Positives = 147/312 (47%), Gaps = 15/312 (4%)

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
            T       L   L    ++          ++E+   L+    +L   S          E
Sbjct: 459 QTQHNELENLNAELEAQSQKLQASEEELRVQQEE---LQQTNGELEERSGLL-------E 508

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            K  +  +    +  E  + +KS+FLA +SHE+RTPL +I+  S ++       L +   
Sbjct: 509 EKNLE--ILKKAEELELTTRYKSEFLANMSHELRTPLNSILLLSRLLAENDDKNLTSE-Q 565

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
           IEYA  I  SGN +L +++++LD+SKIE+GKM L + PVS+ E   +   L    A EK 
Sbjct: 566 IEYATVIQSSGNGLLGLIDEILDLSKIEAGKMELDYVPVSVKEICDDMKGLFAPVAREKG 625

Query: 684 ILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVILRV 741
           +    +  N +P ++  D   ++QI  N++SNA+ FT  G   I +     ++  +   V
Sbjct: 626 LDFSVAIGNGVPPVIETDKMRMEQILKNLVSNALKFTSQGSVGITVKLQEGNDRMLCFVV 685

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
           RDTG+G+   + +   + F Q   S + +  GTGLGL +++ +     G+  + S   +G
Sbjct: 686 RDTGIGVAPEKQQHIFEAFQQADGSTKRKYGGTGLGLSISRELAKLLGGEISLTSVVNEG 745

Query: 802 TLIEIIFPLYDT 813
           +   +  P+  T
Sbjct: 746 SEFTLFVPIKPT 757


>gi|75909218|ref|YP_323514.1| histidine kinase [Anabaena variabilis ATCC 29413]
 gi|75702943|gb|ABA22619.1| histidine kinase [Anabaena variabilis ATCC 29413]
          Length = 603

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 84/258 (32%), Positives = 139/258 (53%), Gaps = 3/258 (1%)

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
              +  I   +Q+   L  + +  E+ +  K+ FLA  SHEIRTPL++IIGF+ ++  Q 
Sbjct: 203 LAHLKKIQSLQQKSQNLGISNQELERTNQLKNQFLANTSHEIRTPLSSIIGFTHLLLAQG 262

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
           + P    R+ EY N I  SG  +L ++ND+LD+SKIE+ ++ + +E V++ E     ++L
Sbjct: 263 YDP-TRERHHEYLNIIQSSGKHLLALINDILDLSKIEANQLEVQWEKVNVPELCQNVLTL 321

Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
           ++  A  K + +      +I   +AD   +KQ+ LN+L NA+ FT  G  + +  T   +
Sbjct: 322 IKEKAANKGVKLSLELDPHIKTFVADPLRLKQMLLNLLFNALKFTNQG-TVGLKVTQRES 380

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
             +   V DTG G++   L    +P+ QIPNS   + EGTGLGL + + + + + G   +
Sbjct: 381 -FIHFTVWDTGSGISPENLALLFQPYFQIPNSSVAQHEGTGLGLVVTRKLAEIHNGSVEV 439

Query: 795 FSTPAKGTLIEIIFPLYD 812
            S    G+   II PL  
Sbjct: 440 ESQVDHGSRFTIILPLQQ 457


>gi|283853104|ref|ZP_06370359.1| histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283571502|gb|EFC19507.1| histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 404

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 83/394 (21%), Positives = 160/394 (40%), Gaps = 31/394 (7%)

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
              +       +    +      ++ +IL+  +D + ++  +  ILS N    + F  P 
Sbjct: 23  FQELRQTIEALKDANAQSSQRRREIAAILDGITDIMMVLAPDLRILSVNHVFRQTFPQPA 82

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
            +   +                  ++  +      + + T       K +   ++   + 
Sbjct: 83  PE--GQFCYKIFRNQDTPCPECPASKSFATG---DICRETAIFKIGGKNIQYEMVASPIR 137

Query: 550 F----SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
                 S   +   D++  K+ + K   A+K+A             V+HE+  PLTAI G
Sbjct: 138 HPDDPESHILVFKRDVTREKEYQAKFYQAEKMATIGM-----LATGVAHEVNNPLTAIFG 192

Query: 606 FSEVI------KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           F+E +        ++  P       +Y + I        DIV  LL  S+       + F
Sbjct: 193 FAEGLRRRLPALREKVDPGVMEDVEDYVSTILLECRRCQDIVTTLLTFSR----HKTVSF 248

Query: 660 EPVSLDEAVSEAISLVQLYANEKR---ILIRTSFANNIPRILADLRSVKQIALNILSNAI 716
            PVSL+  V + + L++ +  ++    I +R     ++P++L D   +KQ+ LN+L NA+
Sbjct: 249 SPVSLNAVVEDTLKLLRSHLKQRNQAKITVRVDLCESLPKVLGDEHQIKQVMLNLLVNAM 308

Query: 717 HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
                 G+I+I+T  +  E V L V D+G G+    ++K  +PF          G+G G+
Sbjct: 309 DAIAGPGRIVITTFQSVPESVCLSVEDSGYGIRAEHMDKLFEPFFTTK----RAGKGIGI 364

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           GL    ++V  + G   + S P +G +  + FP+
Sbjct: 365 GLSTCMSIVQKHHGDITVKSQPGQGAVFTVKFPV 398


>gi|300868403|ref|ZP_07113028.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300333621|emb|CBN58216.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 1773

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 98/800 (12%), Positives = 234/800 (29%), Gaps = 102/800 (12%)

Query: 88   NIDAHGYLK--EISEELPKTIGNYAFKMI--GMRLCDVSDILHIDPNNHIGDLLKRQNTW 143
             + A G +    +S            + +        +      D        +    T 
Sbjct: 998  RLAADGSISIPYVSPGCADLYEVPPEEFLTGIKDFRMLEHPD--DRAAMTQAFVHSAQTL 1055

Query: 144  YGKTTLWPIEGTNLYV-PIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
                  W I  T+  V  +  A+ P    +         G++             +    
Sbjct: 1056 MPFEQEWRIITTSGTVKWVQAASRPEQQADGSIV---WDGVMIDISDRKLAEKSLRLNQF 1112

Query: 203  KFSHLHEIKKGHSSVEKEKYDIFSQQSPP-PHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
                  +         K    +          L                 ++        
Sbjct: 1113 ----AIDRSSIPIWWVKPSGQVAYVNDAACRDLGYSRTEILQKCVGDFNPELSSEVWEKH 1168

Query: 262  LTSEESSLPEQEDFHTINLNQYTKKQYFG----TLQNNSKESFEYLSHRNHPSLSAYFDE 317
                +       + +  N + +            L           +  +     A    
Sbjct: 1169 WQEIKEQGSFVFEAYNFNKSGHRYPVEVTVNYLELDGEEYNCAFVKNISDRKQAEAALYA 1228

Query: 318  GENLTPETVDKCPIPFFVYSHGNLFY-ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
             +      + + P+    +S   L    NP+   +  Y + + +     +  L+    + 
Sbjct: 1229 SQQRLSLLIQQTPMAVIEWSPDFLIQSWNPAAEKIFGYTAAEVMGR--SVDFLIADETVK 1286

Query: 377  DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
             +  +    L           +    I    E+     +      N+  + +    I  +
Sbjct: 1287 IHFDLIVAHLLAQTGGN---RSTNENITKTGESIFCDWYNNLLV-NEDGDLIGIATIAID 1342

Query: 437  DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE-DILRK 495
              D +  +++++     L  +L      +   +   I   +NRA +++ G+    +++ K
Sbjct: 1343 ITDLKQAEKQLQASQQLLELVLNTIPHKVFWKDCNLIYQGSNRAFAEVLGFSSSTEVVGK 1402

Query: 496  PFTVF-LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC- 553
                                 ++  +L +     T     +   +        L  ++  
Sbjct: 1403 SDYDLSWTAEESDWFRQCDRRVIESNLPELGIVETTLQ-ADGTTVWAETSKLPLHDTTGT 1461

Query: 554  ---YSLTMHDISEWKQEKNKLSHAKKIAE----------------KESSHKSDFLARVSH 594
                     DIS+ KQ +  ++   +  E                ++ S   + +A V+H
Sbjct: 1462 VIGVLGIYQDISDRKQAETLIAQKSQELEQALQNLQQTQLQMIQSEKMSALGNLVAGVAH 1521

Query: 595  EIRTPLTAIIGFSEV-------------IKNQRFGPLGNPRYIE---------------Y 626
            EI  P+  I G  +              +  Q++  L      E                
Sbjct: 1522 EINNPVGFIGGNIQPALDYINDIFGLIDLIQQKYPQLDPEIQAEIETIELDYIREDLPKL 1581

Query: 627  ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR--- 683
             + +      + +I   L   S+ ++     +    ++ + +   I +++          
Sbjct: 1582 VDSMREGIKRIQEISTSLRTFSRADTD----YPIACNIHDGIDSTIMILKHRLKANESRP 1637

Query: 684  -ILIRTSFANNIPRILADLRSVKQIALNILSNAI----------HFTPSGGQIIISTTHT 732
             I +  ++  N+P++      + Q+ +N+ SNAI           +     +I + T  +
Sbjct: 1638 EITVIKNY-GNLPQVKCYAGQLNQVFMNLFSNAIDALEDSNQGRKYAEIANKITVDTELS 1696

Query: 733  -SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV-DANMG 790
               ++ I+R++D G+GM+     K  +            G+GTGLGL +A+ ++ + + G
Sbjct: 1697 ADKKQAIIRIKDNGIGMSTEVQSKIFEHLFTTKG----VGKGTGLGLAIARQIIEEKHQG 1752

Query: 791  KFYIFSTPAKGTLIEIIFPL 810
            K  + S P++GT+ EI  P+
Sbjct: 1753 KITVSSVPSEGTVFEITIPV 1772



 Score =  122 bits (305), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 43/419 (10%), Positives = 113/419 (26%), Gaps = 43/419 (10%)

Query: 184  VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYD------IFSQQSPPPHLRMK 237
              +           +  + +F  L +   G     +   D        S      +    
Sbjct: 963  ARLYERSQQTLIELRASEARFQKLTDNLPGLIYQIRLAADGSISIPYVSPGCADLYEVPP 1022

Query: 238  NKVS----SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293
             +               D    T+ +           ++    T +       Q     +
Sbjct: 1023 EEFLTGIKDFRMLEHPDDRAAMTQAFVHSAQTLMPFEQEWRIITTSGTVKWV-QAASRPE 1081

Query: 294  NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLT 352
              +  S  +       S     ++   L    +D+  IP + V   G + Y N +     
Sbjct: 1082 QQADGSIVWDGVMIDISDRKLAEKSLRLNQFAIDRSSIPIWWVKPSGQVAYVNDAACRDL 1141

Query: 353  KYKSVDDIEIAGGLSTLLDAPKLSDNNAIK---------PVMLYRSDRTCIAASARLHTI 403
             Y   + ++   G      + ++ + +  +             +            ++ +
Sbjct: 1142 GYSRTEILQKCVGDFNPELSSEVWEKHWQEIKEQGSFVFEAYNFNKSGHRYPVEVTVNYL 1201

Query: 404  QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
            + + E                              D +  +  +     +L  +++ T  
Sbjct: 1202 ELDGEEYNC-------------------AFVKNISDRKQAEAALYASQQRLSLLIQQTPM 1242

Query: 464  GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL-TEILSLDLR 522
             +   + + +I S N A  K+FGY   +++ +     +   T  +    +   +L+    
Sbjct: 1243 AVIEWSPDFLIQSWNPAAEKIFGYTAAEVMGRSVDFLIADETVKIHFDLIVAHLLAQTGG 1302

Query: 523  QTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAE 579
                   +  T E         +           +    DI++ KQ + +L  ++++ E
Sbjct: 1303 NRSTNENITKTGESIFCDWYNNLLVNEDGDLIGIATIAIDITDLKQAEKQLQASQQLLE 1361



 Score = 84.7 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 35/380 (9%), Positives = 100/380 (26%), Gaps = 20/380 (5%)

Query: 86   TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
             W +   G +  +++   + +G    +++   + D +  L  +        +K Q ++  
Sbjct: 1121 IWWVKPSGQVAYVNDAACRDLGYSRTEILQKCVGDFNPELSSEVWEKHWQEIKEQGSFVF 1180

Query: 146  KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
            +   +   G    V + +  L +               V          A      ++ S
Sbjct: 1181 EAYNFNKSGHRYPVEVTVNYLELDGEEYN------CAFVKNISDRKQAEAALYASQQRLS 1234

Query: 206  HLHEIKKGHSSVEKEKYDIFSQQSPPPHL--RMKNKVSSLTEYYAHKDDVLKTE----KY 259
             L +            + I S       +      +V   +  +   D+ +K        
Sbjct: 1235 LLIQQTPMAVIEWSPDFLIQSWNPAAEKIFGYTAAEVMGRSVDFLIADETVKIHFDLIVA 1294

Query: 260  PLLTSEESSLPEQEDFHTINLNQY---TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
             LL     +    E+      + +             +    +   +   +         
Sbjct: 1295 HLLAQTGGNRSTNENITKTGESIFCDWYNNLLVNEDGDLIGIATIAIDITDLKQAEKQLQ 1354

Query: 317  EGENLTPETVDKCPIPFFVYSHGNLFYA-NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
              + L    ++  P   F      ++   N +F  +  + S  ++          D    
Sbjct: 1355 ASQQLLELVLNTIPHKVFWKDCNLIYQGSNRAFAEVLGFSSSTEVVGKSD----YDLSWT 1410

Query: 376  SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
            ++ +        R   + +     + T       ++          +     +   GI  
Sbjct: 1411 AEESDWFRQCDRRVIESNLPELGIVETTLQADGTTVWAETSKLPLHDTTGTVIGVLGIYQ 1470

Query: 436  EDVDTRINKRKMEIEVMQLC 455
            +  D +  +  +  +  +L 
Sbjct: 1471 DISDRKQAETLIAQKSQELE 1490


>gi|120603908|ref|YP_968308.1| signal transduction histidine kinase, nitrogen specific, NtrB
            [Desulfovibrio vulgaris DP4]
 gi|120564137|gb|ABM29881.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
            vulgaris DP4]
          Length = 1105

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 100/810 (12%), Positives = 228/810 (28%), Gaps = 104/810 (12%)

Query: 72   NTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIG--MRLCDVSDILHIDP 129
            +  +F             D       +S  + +  G  A  ++     L  +        
Sbjct: 327  DGMLFSVDAPP-------DGPHRYTYVSRGVERLFGLSAEAVLADPRALEALVVPEDRSR 379

Query: 130  NNHIG-DLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNR 188
            +  +    ++ +  +     +   +G+       + A P +      S     G+     
Sbjct: 380  HTALQQHAIRTRTPFDMMLRIAVADGS--RRIFHVRAKPRHDDG---SSHAWDGVCTDVT 434

Query: 189  VDNDPRALGKRLDKKFSHLHEIKKGH----SSVEKEKYDIFSQQ---SPPPHLRMKN--- 238
               + +   +  +   + + +          S++ +                +R ++   
Sbjct: 435  TAVEQQHALRERESMLAAIGDNLPHGGIFRVSLDAQGLRFMYVSQGIERQLGIRPESLYK 494

Query: 239  KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE 298
              S L   +   D  L  E       + + +     +  ++   +           +   
Sbjct: 495  DSSVLLARFDRNDRALLREACQRCLDDGTPVDITVRYTHVSGRIHWLHLRMARHTADRAC 554

Query: 299  SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP----------FFVYSHGNLFYANPSF 348
                       +      +        +                        L YA+   
Sbjct: 555  RI-LDGLAIDETQLVLQRDALREHERILTALGDSLHEGAIYTCEVLPEGTSRLLYASSQA 613

Query: 349  LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
              L          +      ++      D+          +  T      RL  I  +  
Sbjct: 614  GRLMGVPIQ---RLYDDFDAVVAERIHPDDLEGLAKAECHAQMTLEPLDLRL-RILADEG 669

Query: 409  NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468
                +              +   G+  +    +  +  +E     L  I+EA    +  I
Sbjct: 670  EVRWLHVRSAPSPRAGGGFL-WQGVVLDITALKRTEIALETTRRHLHDIIEAMPSALFGI 728

Query: 469  NREGIILSTNRAVSKLFGYPVE--------------DILRKPFTVFLEQNTPSVMNHYLT 514
            + +  +   N A  +L G+                 +    P          +     + 
Sbjct: 729  DADENVTCWNAAARRLLGFGDPRPHERATASPTGDGEPREHPVMPLTSLPRLAPYAALVR 788

Query: 515  EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL---PFSSCYSLTMHDISEWKQEKNKL 571
              L+       E+  L     ++   + +   +           L + D+++  + +  +
Sbjct: 789  TSLASGTTLRAERTALRLDSGQRFDDVVVYPLQDALKTHRGEAMLRLDDVTDRVRLEEMV 848

Query: 572  SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN----------- 620
               +K+            A ++HEI  PL  ++   + ++ +    L             
Sbjct: 849  VQNEKML-----SIGGLAAGMAHEINNPLAGVLQGVQNVRRRFSPTLAANAADAEACGLS 903

Query: 621  -PRYIEYANY---------IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
                 +Y            I  SG     IV ++L+ S+    + +L   P  L+  + +
Sbjct: 904  LEAMQQYMQRRGILFLLDGIRESGERAARIVRNMLEFSR----RSSLEKIPTDLNALLHK 959

Query: 671  AISLVQLYANE------KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT----P 720
             +       +       KR+ I      ++P IL     ++Q+ +N++ NA+H       
Sbjct: 960  VVEFASADFDIHDDYDFKRVRILFETQPDLPPILCAPGEMEQVLVNLVRNALHAMAAVRS 1019

Query: 721  SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
            +   I + +  T    V + V D G GM+     K  +PF          G+GTGLGL +
Sbjct: 1020 ATPTITLRSRRTEKG-VRIEVEDNGPGMSEDVRRKVFEPFFTTKAP----GKGTGLGLSV 1074

Query: 781  AKAMVDA-NMGKFYIFSTPAKGTLIEIIFP 809
            +  +V   + G   + S P +GT   I  P
Sbjct: 1075 SYFIVTRFHKGLLRVESAPGEGTRFIIELP 1104



 Score = 96.6 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 50/568 (8%), Positives = 141/568 (24%), Gaps = 58/568 (10%)

Query: 52  SNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTI----- 106
           +       ++ S    L + +  V D  P      + +D H +L  ++  L   I     
Sbjct: 35  TPDIAVPDKTPSAAG-LSALHGHVLDADPTPR---FVLDDHLHLVLLNPALADLICHDAI 90

Query: 107 -------GNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYV 159
                  G     + G  + +V               ++   +      +    G +   
Sbjct: 91  GRHGNAAGPSPDTLTGRHIAEVFTPDAFTQMATALADVQSGLSPVHSLLIKRAVGDSY-- 148

Query: 160 PIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEK 219
            + L   P+    R F      G +                +     + +     +   +
Sbjct: 149 -LRLRIFPVPHGGRTFIA----GDLAPADTPCRSELQMFEQEATLRAIGDNLPDCAIFSQ 203

Query: 220 EKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL--------LTSEESSLPE 271
                 +         + +      E   +  ++L+    P             + S   
Sbjct: 204 RVLPDGTIIPRYRSRSVSSLFGIPFEMAMNAQELLRLVVVPEDSHMFDANAIQAQGSFHG 263

Query: 272 QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS----LSAYFDEGENLTPETVD 327
                 +N       Q     +     S  +    +  +          E +       D
Sbjct: 264 AIRIRRMNDGAMRWIQVHAAARPQPDGSSIWDGSVSDITHLKKQERSLRERDLTIRSIGD 323

Query: 328 KCPIPFF------VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
             P                  Y +     L    +   +     L  L+     S + A+
Sbjct: 324 NMPDGMLFSVDAPPDGPHRYTYVSRGVERLFGLSAEAVLADPRALEALVVPEDRSRHTAL 383

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
           +   +             L     +      +  +  +  +    +   +G+  +     
Sbjct: 384 QQHAIRTRT----PFDMMLRIAVADGSRR--IFHVRAKPRHDDGSSHAWDGVCTDVTTAV 437

Query: 442 INKRKMEIEVMQLCSILEATSD-GI--AIINREG-IILSTNRAVSKLFGYPVEDILRKP- 496
             +  +      L +I +     GI    ++ +G   +  ++ + +  G   E + +   
Sbjct: 438 EQQHALRERESMLAAIGDNLPHGGIFRVSLDAQGLRFMYVSQGIERQLGIRPESLYKDSS 497

Query: 497 -FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-- 553
                 ++N  +++       L       ++     +    ++  L + + +        
Sbjct: 498 VLLARFDRNDRALLREACQRCLDDGTP--VDITVRYTHVSGRIHWLHLRMARHTADRACR 555

Query: 554 -YSLTMHDISEWKQEKNKLSHAKKIAEK 580
                  D ++   +++ L   ++I   
Sbjct: 556 ILDGLAIDETQLVLQRDALREHERILTA 583


>gi|26248608|ref|NP_754648.1| sensory histidine kinase AtoS [Escherichia coli CFT073]
 gi|26109013|gb|AAN81216.1|AE016763_175 Sensor protein atoS [Escherichia coli CFT073]
          Length = 612

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 94/467 (20%), Positives = 199/467 (42%), Gaps = 30/467 (6%)

Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
            +   +   +I      + L +  +         +++  +    I+    +   +    N
Sbjct: 162 SMIPIERNGEILGYIWANELTEDIRRQAWKMDARIIIVLTAGLLISLLLIVLFSRRLSAN 221

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN--KRKMEIEVMQLCSILEATSDGIAI 467
              +T      A   P  +PQ   E   +   +N   + +         I+E  +DG+  
Sbjct: 222 IDIITDGLSTLAQNIPTRLPQLPGEMGQISQSVNNLAQALRETRTLNDLIIENAADGVIA 281

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
           I+R+G + + N A   + GY   +++ +P+++       +     + + L          
Sbjct: 282 IDRQGDVTTMNPAAEVITGYQRHELVGQPYSMLF---DNTQFYSPVLDTLEHGTEHV-AL 337

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
                 ++ + + L +   ++  +        +   D++  K+ + +++ A+++A     
Sbjct: 338 EISFPGRD-RTIELSVTTSRIHNTHGEMIGALVIFSDLTARKETQRRMAQAERLAT---- 392

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
              + +A V+HE+R PLTAI G+ ++++ Q   P+    + EY + + +  + +  ++  
Sbjct: 393 -LGELMAGVAHEVRNPLTAIRGYVQILRQQTRDPI----HQEYLSVVLKEIDSINKVIQQ 447

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703
           LL+ S+    +    ++ VSL+  V E + LVQ    + R+   +   N +  I AD   
Sbjct: 448 LLEFSRPRHSQ----WQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSPINADREL 503

Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
           +KQ+ LNIL NA+    + G+I I T   S+ +  + + D G G+     +K   PF   
Sbjct: 504 LKQVLLNILINAVQAISARGKIRIRTWQYSDSQQAISIEDNGSGIDLSLQKKIFDPFFTT 563

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             S      GTGLGL L++ +++A+ G   + S P  G    +I P+
Sbjct: 564 KAS------GTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILPI 604



 Score = 40.4 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/117 (10%), Positives = 37/117 (31%), Gaps = 6/117 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G +  ++       G    +++G     +    +    + + D L+          
Sbjct: 282 IDRQGDVTTMNPAAEVITGYQRHELVGQPYSMLF--DNTQFYSPVLDTLEHGTEHVALEI 339

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
            +P     + + +  +   I++ + E  G     I        + +    + ++  +
Sbjct: 340 SFPGRDRTIELSVTTS--RIHNTHGEMIGA--LVIFSDLTARKETQRRMAQAERLAT 392


>gi|148263612|ref|YP_001230318.1| response regulator receiver sensor signal transduction histidine
           kinase [Geobacter uraniireducens Rf4]
 gi|146397112|gb|ABQ25745.1| response regulator receiver sensor signal transduction histidine
           kinase [Geobacter uraniireducens Rf4]
          Length = 520

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 90/539 (16%), Positives = 191/539 (35%), Gaps = 34/539 (6%)

Query: 278 INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS 337
            +  +  +        +   E+ +     +            +     +D     + + +
Sbjct: 10  ADDRRLLRYSLAQHGCDTVIEASDGREGFDLARAHRPDLIISDALMPRLDGFQFLWMIKT 69

Query: 338 HGNLFYANPSFLLLTKYKSVD-DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS--DRTCI 394
              L      F       S + ++  + G    +  PK  +    +   + R        
Sbjct: 70  DEELRAIPFVFYSAVYTGSKEKELAFSLGAEAFIVKPKEPEEFWQELNAILRGLETGKKR 129

Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
                L   +             +              +E      +  +  +  +  Q 
Sbjct: 130 PLPPALLEEEKE-------YLRKYSGVVAAKLEEKVRELEESLARRKKAEEVLRSQFTQF 182

Query: 455 CSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
            +I +A +  + + +   G IL  NR    LFG   +                    + +
Sbjct: 183 STIFDALNALVYVADMENGEILFMNRYGGMLFGDDWQRKKCYEVFQSHPGEHCGKCPNDM 242

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY-SLTMHDISEWKQEKNKLS 572
             ++   + Q        S    +             S         DI+E K+ +    
Sbjct: 243 --LVRDGIPQQPYVWEFRSAVNGRWYQGIDRAIPWTDSRLVRLQIAFDITERKEIE---- 296

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
                       K   L+ VSHE+RTPLTA++G++E++          P+  EY   I R
Sbjct: 297 ----------QIKEGMLSAVSHEMRTPLTALMGYTELMLTNELSM---PQLKEYLKVIQR 343

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
             + + +++ + LDI + ++ +    F PV++   + E   L    A  +   I      
Sbjct: 344 EADKLNELIGNYLDIQRQKASRSTAGFRPVNIRPLMEETADLFG--AASRNHRIIVDCPV 401

Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752
           ++  +L D + ++++   ++SNA+ F+P+GG++ +  +  +   + + VRD GVG+   E
Sbjct: 402 DLAPVLGDEKLLRRMLEMLVSNAVKFSPNGGEVCLGASMEA-GNITILVRDQGVGIPAEE 460

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
           LE   + F ++ N+ +    G GLGL L K +   + G+ +  S+  KG+   +  P++
Sbjct: 461 LEHIFELFYRVDNTDRRMFGGIGLGLALVKEIAIGHGGRVWAESSIGKGSAFYVSLPVH 519


>gi|219670690|ref|YP_002461125.1| histidine kinase [Desulfitobacterium hafniense DCB-2]
 gi|219540950|gb|ACL22689.1| histidine kinase [Desulfitobacterium hafniense DCB-2]
          Length = 561

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 79/253 (31%), Positives = 143/253 (56%), Gaps = 5/253 (1%)

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
               +DI E +Q   +L  A +   +++ +KSDFLA +SHE+RTPLT+II F+EV+  ++
Sbjct: 297 LARANDILESQQI--QLEEANRRLREDNQYKSDFLAIISHELRTPLTSIIAFAEVL--EK 352

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                 P+  +    I  +  ++L ++N++L+I++IE+GK  L  EP+ L + ++   S+
Sbjct: 353 ASEDKCPKEQKITQEIRANSQVLLRMINNILEIARIEAGKQELIIEPIDLVDVINAVESV 412

Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-TS 733
           ++    +K I   +   +++P I  D   +++I  N+LSNA+ FTP GG+I +   +   
Sbjct: 413 IEPLIEKKSIQYSSVLHSDVPVIEGDREGLRRIVENLLSNALKFTPEGGEIKVWVAYDQE 472

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
             EV++ V+D G+G+   +     + F Q  +S   +  G+GLGL LAK + + + G   
Sbjct: 473 RNEVLINVQDNGIGIRKEDQPYIFEKFVQSDSSIHRQYNGSGLGLALAKELAELHGGWIK 532

Query: 794 IFSTPAKGTLIEI 806
           + S   KG+L  +
Sbjct: 533 VVSELDKGSLFTV 545


>gi|117619875|ref|YP_855359.1| hybrid sensory histidine kinase BarA [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117561282|gb|ABK38230.1| sensor protein BarA [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 903

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 90/348 (25%), Positives = 156/348 (44%), Gaps = 20/348 (5%)

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
           A S LFG+ +   + +P T  +       ++      L   +   L             +
Sbjct: 187 AFSTLFGFRLVKSVTQPITDMV-----QAVHKIREGRLDTRVSGQLTGELDMLKNGINAM 241

Query: 540 SLRIIIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHE 595
           +  +                D+ E  ++      +L  AKK A++ +  KS+FLA +SHE
Sbjct: 242 AKALSEYHEEMQQNIDQATSDLRETLEQIEIQNVELDMAKKRAQEAARVKSEFLANMSHE 301

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           +RTPL  +IGF+  +      P       +Y   I++S   +L I+ND+LD SK+E+GK+
Sbjct: 302 LRTPLNGVIGFTRQLLKTSLTP----SQTDYMQTIEKSARNLLGIINDILDFSKLEAGKL 357

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSN 714
            L   P SL + ++E + L+   A++K++ +       +P  +  D   ++Q+  N+  N
Sbjct: 358 QLEHIPFSLRDTLNETMHLLGPSAHDKQLELSLQVDAEVPDYLTGDPMRLQQVLTNLTGN 417

Query: 715 AIHFTPSGGQIIISTTH---TSNEEVILRV--RDTGVGMTNYELEKAMKPFGQIPNSQQI 769
           AI FT  G  + +        S  +V L V  RDTG+G++  +  +  + F Q  +S   
Sbjct: 418 AIKFTEHG-NVDVRIEQIGSASGSKVRLNVLIRDTGIGISEEQQRQLFQAFNQADSSISR 476

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
           R  GTGLGL + + +V    G+    S   KG++      L  +  P 
Sbjct: 477 RYGGTGLGLVITQKLVQQMGGQIRFESELGKGSVFSFSLDLEVSPLPQ 524


>gi|71908921|ref|YP_286508.1| sensor histidine kinase [Dechloromonas aromatica RCB]
 gi|71848542|gb|AAZ48038.1| ATP-binding region, ATPase-like:Histidine kinase, HAMP
           region:Histidine kinase A, N-terminal [Dechloromonas
           aromatica RCB]
          Length = 845

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 85/243 (34%), Positives = 132/243 (54%), Gaps = 9/243 (3%)

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
            +L  A++ AE+ S  KS FLA +SHE+RTPL  I+GF+E++K +    L NP + EYA 
Sbjct: 604 KRLDDAREKAEEASRQKSAFLATMSHELRTPLNGILGFAELLKYE----LDNPSHQEYAT 659

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I +SG  +L++VN++LD++KIE+G+M     P  L   VSE ++  Q+ A  K +    
Sbjct: 660 VIQQSGEHLLNLVNEILDLAKIEAGEMLFKRVPTPLAGLVSECVAGHQVTATAKGLGFDL 719

Query: 689 SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-EVILRVRDTGV 746
           + A  +P  ++ D   ++QI  N+LSNA+ FT  G    IS T      E+   V DTG 
Sbjct: 720 NVAEGLPEQLVTDPLRLRQILNNLLSNAVKFTEQG---KISLTVRPAGQEIAFAVSDTGA 776

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+    L+   + F Q+ +       GTGLGL L + + +   G+  + S    G+   +
Sbjct: 777 GIPPESLDMVFEKFKQLESFLTREHGGTGLGLSLVRQLAEHMGGRVTLESAVGVGSTFTV 836

Query: 807 IFP 809
             P
Sbjct: 837 YLP 839


>gi|118581129|ref|YP_902379.1| PAS/PAC sensor signal transduction histidine kinase [Pelobacter
           propionicus DSM 2379]
 gi|118503839|gb|ABL00322.1| PAS/PAC sensor signal transduction histidine kinase [Pelobacter
           propionicus DSM 2379]
          Length = 683

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 87/691 (12%), Positives = 197/691 (28%), Gaps = 79/691 (11%)

Query: 170 SRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS 229
            R  + S  R               A    +  +   +       + +  +     +   
Sbjct: 15  DRAGQ-SDARSAVTARFLGRIIQSIAAPLYVIDRSHAILFWNSALAQLTGKSSFQMTGTK 73

Query: 230 ---PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKK 286
                 H R K  ++ L    A         +         +L  +  +  +   +    
Sbjct: 74  LHWSVFHTRQKQLLADLIIDGACPASDRAYPQVVRHADG--TLQTEGWYDDVGGKRRYLL 131

Query: 287 QYFGTLQNNSKESFEYLSHRNHPSLSAYFDE----GENLTPETVDKCPIPF-FVYSHGNL 341
                + ++       +      +      E            ++  P P  +       
Sbjct: 132 FEARPITDDGNTVVAAVETIQDITERKQAQEVMDGQRRFFQGILESIPNPVSYKDLSHAY 191

Query: 342 FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401
              N +F         + I                   + +         +       L 
Sbjct: 192 LGCNRAFSEFFGRSEEEIIGKMISD----VVAPEYAVGSTEADRRVLESGSSYKYETTL- 246

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
                     ++       +    E     G   +  + R    +++    +    L+  
Sbjct: 247 --PRGDGQLRSVLVTKAPFSLLNGELGGTVGTFVDITEQRFLDEQVKEAKREWEETLDCL 304

Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
            D + + +    +   NR +  + G   +++L + +   L        +     +    +
Sbjct: 305 KDFVILTDELHRVRRCNRLLCDMTGKGFDEVLNEDWRDLLP-------DAGFEALSFNGV 357

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE 581
              L            +    +   +    + Y ++++D++E +    +L    +   + 
Sbjct: 358 SGELVHAASKRYYGLNIY--SMTETENERVTGYVISLNDMTELRAMNEELKRTAQELNEA 415

Query: 582 SSH---------KSDFLARVSHEIRTPL---------------------TAIIGFSEV-- 609
                            A V+HEI  P+                     TA+IG  E   
Sbjct: 416 QRAVYQQEKLASIGQLAAGVAHEINNPMGFISSNLTTLGKYLDKLRAFETAMIGLMERDG 475

Query: 610 ----------IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
                     ++                         V  IV DL   S+++        
Sbjct: 476 NSETLGELKELRRNMKIDYILGDIQGLLEESHEGAERVRRIVQDLKSFSRVD----EAEC 531

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719
           +P  +++ ++  +++V+         +    A ++P +    + + Q+ +N+L NA H  
Sbjct: 532 KPTCINDCLTSTLNMVRNEIKYV-AEVELDVAPDLPLLHCYPQQLNQVFMNLLVNAAHAI 590

Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
              G I I T     ++V+++VRDTG G+    L +  +PF          G+GTGLGL 
Sbjct: 591 TERGVIGIRT-FRDGDDVVIQVRDTGKGIAPEHLTRVFEPFFTTK----EVGKGTGLGLS 645

Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           ++  +V  + G+  + S    G+   I  PL
Sbjct: 646 ISYDIVKKHGGRIEVESAVGVGSTFTIHLPL 676



 Score = 57.7 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 37/393 (9%), Positives = 90/393 (22%), Gaps = 46/393 (11%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + ID    +   +  L +  G  +F+M G +L     + H      + DL+        
Sbjct: 42  LYVIDRSHAILFWNSALAQLTGKSSFQMTGTKLH--WSVFHTRQKQLLADLIIDGACPAS 99

Query: 146 KTTL---------------WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVD 190
                              W  +       +   A PI               +      
Sbjct: 100 DRAYPQVVRHADGTLQTEGWYDDVGGKRRYLLFEARPITDDGNTVVAA--VETIQDITER 157

Query: 191 NDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP--PPHLRMKNKVSS--LTEY 246
              + +     + F  + E      S +   +              R + ++    +++ 
Sbjct: 158 KQAQEVMDGQRRFFQGILESIPNPVSYKDLSHAYLGCNRAFSEFFGRSEEEIIGKMISDV 217

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL----QNNSKESFEY 302
            A +  V  TE    +    SS   +      +    +                     +
Sbjct: 218 VAPEYAVGSTEADRRVLESGSSYKYETTLPRGDGQLRSVLVTKAPFSLLNGELGGTVGTF 277

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIE 361
           +       L     E +    ET+D       +      +   N     +T     + + 
Sbjct: 278 VDITEQRFLDEQVKEAKREWEETLDCLKDFVILTDELHRVRRCNRLLCDMTGKGFDEVLN 337

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                    D   L  +   + +         + A           +    +      + 
Sbjct: 338 E--------DWRDLLPDAGFEALSFNGVSGELVHA---------ASKRYYGLNIYSMTET 380

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
            +            +  + R    +++    +L
Sbjct: 381 -ENERVTGYVISLNDMTELRAMNEELKRTAQEL 412



 Score = 54.6 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 36/325 (11%), Positives = 90/325 (27%), Gaps = 22/325 (6%)

Query: 15  TSNCKGNTQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTF 74
           T   +G   D+  K+    FE      +    ++   +  T Q+         +      
Sbjct: 113 TLQTEGWYDDVGGKRRYLLFEARPITDD---GNTVVAAVETIQDITERKQAQEVMDGQRR 169

Query: 75  VFDP--IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-N 131
            F           ++  D        +    +  G    ++IG  + DV    +   +  
Sbjct: 170 FFQGILESIPNPVSYK-DLSHAYLGCNRAFSEFFGRSEEEIIGKMISDVVAPEYAVGSTE 228

Query: 132 HIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN 191
               +L+  +++  +TTL    G      + +   P    N E  G    G         
Sbjct: 229 ADRRVLESGSSYKYETTL--PRGDGQLRSVLVTKAPFSLLNGELGGT--VGTFVDITEQR 284

Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSSLTEYYAH 249
                 K   +++    +  K    +  E + +            +  ++V +       
Sbjct: 285 FLDEQVKEAKREWEETLDCLKDFVILTDELHRVRRCNRLLCDMTGKGFDEVLNEDWRDLL 344

Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
            D   +   +  ++ E                +Y     +   +  ++    Y+   N  
Sbjct: 345 PDAGFEALSFNGVSGE---------LVHAASKRYYGLNIYSMTETENERVTGYVISLNDM 395

Query: 310 SLSAYFDEGENLTPETVDKCPIPFF 334
           +     +E    T + +++     +
Sbjct: 396 TELRAMNEELKRTAQELNEAQRAVY 420


>gi|301310170|ref|ZP_07216109.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
 gi|300831744|gb|EFK62375.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
          Length = 632

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 104/512 (20%), Positives = 200/512 (39%), Gaps = 32/512 (6%)

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
              +S   D  E +  +     P+   +Y   G L   N   + +   +S  D+      
Sbjct: 125 EEKISKMIDHNEMIFRKLYVNLPVGVELYDRDGYLIDLNAKDMEIFGIRSKKDVLGVNIF 184

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
           S  +    +         + +R + +        +      E  + +        +Q  E
Sbjct: 185 SNPIMPKDVIKKLKENKSVNFRLNYSFKKVD-DYYNTSKVGE--MDIVTKASILYDQRGE 241

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR---EGI-ILSTNRAVS 482
                 I  ++ +  I   ++         +      G A+ +    EG  I      + 
Sbjct: 242 PSSYLLINLDNTEKMIAYNRISEFENVFTLVSVYAKVGYALYDLYTFEGYAIKQWYENMG 301

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE-KLLSL 541
           +  G P+  I+      ++  N    +N +  E+          +     + +  K +  
Sbjct: 302 EKDGTPLSQIIG--IYSYIHPNDAGYINSFFEEV-KQGKAHHFRREVRVKSGDGWKWICA 358

Query: 542 RIIIKK---LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
            I        P         +DI+E K  + K    ++ AE+    KS FLA +SHEIRT
Sbjct: 359 NITRNPQSVDPNKPEMICINYDITELKDSQLK----RERAEELDRLKSAFLANMSHEIRT 414

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
           PL AI+GFS+++              E+   ID +  ++L +++D+LD++KIESG M+L 
Sbjct: 415 PLNAIVGFSQLLAETD----DPEERHEFVEIIDSNNRMLLQLISDILDLAKIESGTMDLK 470

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718
           F  +++ E ++E ++  ++   +  + +     +   +I +D   + Q+  N L+NAI +
Sbjct: 471 FADMNVKEVINEIVTSFRIKMPD-NVALIAPQDSPECQIYSDRMRLTQVISNFLNNAIKY 529

Query: 719 TPSGGQIIISTTHTS-NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
           T  G    I+  +    +E+   V DTG GM+          F +    +    +GTGLG
Sbjct: 530 TSEG---CITLAYEIIGDEIKFSVTDTGDGMSQEIQAHIFDRFYKGNTFK----QGTGLG 582

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           L + + +V+   G+  + S   KG+      P
Sbjct: 583 LSICETIVNRLGGRIGVNSELGKGSTFWFTHP 614


>gi|149922749|ref|ZP_01911174.1| PAS/PAC sensor signal transduction histidine kinase [Plesiocystis
           pacifica SIR-1]
 gi|149816369|gb|EDM75870.1| PAS/PAC sensor signal transduction histidine kinase [Plesiocystis
           pacifica SIR-1]
          Length = 615

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 88/581 (15%), Positives = 209/581 (35%), Gaps = 44/581 (7%)

Query: 237 KNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL--PEQEDFHTINLNQYTKKQYFGTLQN 294
            +  + + +  +      +    PL       L  P  +        + T     G +  
Sbjct: 34  ADHEARIEDELSRHARASREFLGPLDAPWAPELIDPWADRLGAAMDTRVTIIDAEGLVLG 93

Query: 295 NSKESFEYLS----HRNHPSLSAYFDEGENLTPETVDKCPIPFF---VYSHGNLFYANPS 347
           +S      L+    H + P + +   +   L+    +          V   G   Y   +
Sbjct: 94  DSNLEVRELASLENHADRPEVRSAQPDRCGLSTRYSETLNTEMLYCAVVLEGERGYVRVA 153

Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
             L    ++ + + +    + LL    ++       V          A       +    
Sbjct: 154 TPLRDLDETFERLRLVLVFAGLLA---VALAIGAGSVASRLMYGRLRALMEAAQAVAEGD 210

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
           ++       P   +++F           ++++  +  +++  E     ++L++  + +  
Sbjct: 211 QSREI----PVTSSDEFGGLAGSLSRVSKELERTV--KELTSERDLFEAVLQSMEEAVLA 264

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
           ++ +  +++ NR+   L     +   R    V         ++  L         ++++ 
Sbjct: 265 VDADRRVVAVNRSARDLLSITGKVQGRLLLEVVRIPQLSDAVDTALR-----GESRSIDV 319

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
                +    L  L +        S   L +HD++E ++ +                + D
Sbjct: 320 NLETRSG---LHHLLVRATPRGEGSGAVLVIHDVTEVRRLETV--------------RRD 362

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           F+A VSHE+RTP++ I   +E +           +   + + + R+   +  +++DLLDI
Sbjct: 363 FVANVSHELRTPVSIIQANTETLLAGALDE--PAQARRFLDAVRRNAERLGQLISDLLDI 420

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707
           S+IE+GK  +   P+S+          V      + +++       + ++ AD  +++Q+
Sbjct: 421 SRIEAGKYAIEMRPLSVASVARSVNKAVAEACRRRGVVLEVDIEPEL-QVRADAGALEQV 479

Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
            +N++ NA+ + P GG + +         V + VRD G G+     ++  + F ++   +
Sbjct: 480 LINLVENAVKYGPEGGLVEL-AAREDGAAVRIEVRDEGPGIAPDHRKRVFERFYRVDPGR 538

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
                GTGLGL + K + D   G   +      G++  +  
Sbjct: 539 SRHMGGTGLGLAIVKNLTDVMGGDVGVTPREPTGSIFWLSL 579


>gi|10803577|ref|NP_045975.1| hypothetical protein VNG7030 [Halobacterium sp. NRC-1]
 gi|16120008|ref|NP_395596.1| Htr-like protein [Halobacterium sp. NRC-1]
 gi|2822308|gb|AAC82814.1| unknown [Halobacterium sp. NRC-1]
 gi|10584098|gb|AAG20731.1| Htr-like protein [Halobacterium sp. NRC-1]
          Length = 917

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 105/729 (14%), Positives = 242/729 (33%), Gaps = 66/729 (9%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147
           +D   + + +++      G    +MIG     +     +   N  +  +++    W G+T
Sbjct: 239 LDEDEHFRYVNQSFADLYGYEPAEMIGEHWELIYPDEEVQAINEEVLSIVEETGYWRGET 298

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
           T    + +       L+                           +     + + +++  +
Sbjct: 299 TGLRADDSTFIEAHTLSQT---DEGGLI------CTARDITEAQEQAQELEEVTQQYRTV 349

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMK--NKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
            E  +    + ++    F        L       + +  E     +      ++     +
Sbjct: 350 VEQSRAGIRIVQDGTVKFVNDRLAEMLGYPKHELLGAPAEEIITSETEDIVRRHHATRMQ 409

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
               P++ +                  +         LS     +     ++        
Sbjct: 410 GEPAPDRYEVEVDTEAGDRLCVELSVARIQYAGKPASLSLIRDITERKEGEQALERYAAL 469

Query: 326 VDKCPIP--FFVYSHGN--LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
            D  P       Y      +  ANP+F  L      D +         +D    S +   
Sbjct: 470 FDNAPDATALVEYRDETPIIRDANPAFEALFAGGDGDIVGQD------IDGVVASSDQVA 523

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
           +   + +  +        L     +   +     +P E   +  E      I P+  + +
Sbjct: 524 EARTISQQVQEGEPIQKELTRETADGLRTFDFRSVPVEDR-ETGEIESAFVIYPDITERK 582

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
            ++R++E    +  +++EAT+D + +++ EG     + A+ +  GY  E +L +  +  +
Sbjct: 583 AHRRELE----RYETLVEATADPMYMLDEEGRFTYVDDAMVETTGYSEETLLGEHVSKVM 638

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTM 558
           E++        +  +LS   ++      +  T   +  S    I  L         +  +
Sbjct: 639 EEDHVERGEQLIESLLSSGEKRG-TFEMVIETAGGERFSTENHISLLDGDGEFHGTAGVL 697

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            DI++  + + +L   +           +F + VSH++R PL    G  E+         
Sbjct: 698 RDITDRLERERQLKRERDRL-------DEFASVVSHDLRNPLNVAEGRLELAMENCES-- 748

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
                 E+ + + +S + +  +++D+L +++  +G+     EPV L + V      V+  
Sbjct: 749 ------EHHDSVAQSLDRMESLIDDVLSLAR--AGEAVGETEPVELADLVEACWQTVET- 799

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738
                +++ T        I AD   ++Q+  N+L NA+     G  + I+     +    
Sbjct: 800 -ASAGLVVETET-----TIQADPSRLQQLFENLLRNAVEHG--GEDVTITIGDLPDG--- 848

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
             V D G G+   E          +        +GTGLGL + + + +A+  +  +  + 
Sbjct: 849 FYVEDDGQGIPEDERGNV------LDAGYSTAADGTGLGLSIVREVAEAHGWEIEVTESS 902

Query: 799 AKGTLIEII 807
             G   EII
Sbjct: 903 DGGARFEII 911



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/372 (9%), Positives = 97/372 (26%), Gaps = 17/372 (4%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
            I   G +K +++ L + +G    +++G    ++      D          +      + 
Sbjct: 358 RIVQDGTVKFVNDRLAEMLGYPKHELLGAPAEEIITSETEDIVRRHHATRMQGEPAPDRY 417

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRG-FGIVHVNRVDNDPRALGKRLDKKFSH 206
            +         + ++L+   I     +++G      ++       +     +R    F +
Sbjct: 418 EVEVDTEAGDRLCVELSVARI-----QYAGKPASLSLIRDITERKEGEQALERYAALFDN 472

Query: 207 LHEIKKGHSSVEKEKY--DIFSQQSPPPHLRMKNKVS-SLTEYYAHKDDVLKTEKYPLLT 263
             +        ++     D              + V   +    A  D V +        
Sbjct: 473 APDATALVEYRDETPIIRDANPAFEALFAGGDGDIVGQDIDGVVASSDQVAEARTISQQV 532

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
            E   + ++    T +  +    +        + E           +             
Sbjct: 533 QEGEPIQKELTRETADGLRTFDFRSVPVEDRETGEIESAFVIYPDITERKAHRRELERYE 592

Query: 324 ETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
             V+    P   +   G   Y + + +  T Y     +           +  + +++  +
Sbjct: 593 TLVEATADPMYMLDEEGRFTYVDDAMVETTGYSEETLLGE-------HVSKVMEEDHVER 645

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
              L  S  +          +          T       +   E     G+  +  D   
Sbjct: 646 GEQLIESLLSSGEKRGTFEMVIETAGGERFSTENHISLLDGDGEFHGTAGVLRDITDRLE 705

Query: 443 NKRKMEIEVMQL 454
            +R+++ E  +L
Sbjct: 706 RERQLKRERDRL 717



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 20/150 (13%), Positives = 50/150 (33%), Gaps = 4/150 (2%)

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
               +     R    +   L +I E   +GI+I++ +      N++ + L+GY   +++ 
Sbjct: 207 NRITNHVERVRAQRKQQRHLDAI-ETAQEGISILDEDEHFRYVNQSFADLYGYEPAEMIG 265

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554
           + + +         +N  +  I+           T G   ++    +             
Sbjct: 266 EHWELIYPDEEVQAINEEVLSIVE--ETGYWRGETTGLRADDSTF-IEAHTLSQTDEGGL 322

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
             T  DI+E +++  +L    +        
Sbjct: 323 ICTARDITEAQEQAQELEEVTQQYRTVVEQ 352



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/260 (12%), Positives = 70/260 (26%), Gaps = 10/260 (3%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTWY 144
            + +D  G    + + + +T G     ++G  +  V +  H++     I  LL       
Sbjct: 602 MYMLDEEGRFTYVDDAMVETTGYSEETLLGEHVSKVMEEDHVERGEQLIESLLSSGEKRG 661

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
               +    G       +     +   + EF G  G  ++       +     KR   + 
Sbjct: 662 TFEMVIETAG-GERFSTENHIS-LLDGDGEFHGTAG--VLRDITDRLERERQLKRERDRL 717

Query: 205 SHLHEIKKGHSS----VEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
                +          V + + ++  +     H     +     E        L      
Sbjct: 718 DEFASVVSHDLRNPLNVAEGRLELAMENCESEHHDSVAQSLDRMESLIDDVLSLARAGEA 777

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
           +  +E   L +  +     +   +      T +   +     L       L    + G  
Sbjct: 778 VGETEPVELADLVEACWQTVETASAGLVVET-ETTIQADPSRLQQLFENLLRNAVEHGGE 836

Query: 321 LTPETVDKCPIPFFVYSHGN 340
               T+   P  F+V   G 
Sbjct: 837 DVTITIGDLPDGFYVEDDGQ 856


>gi|228946252|ref|ZP_04108582.1| hypothetical protein bthur0007_23990 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228813423|gb|EEM59714.1| hypothetical protein bthur0007_23990 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
          Length = 590

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 89/508 (17%), Positives = 177/508 (34%), Gaps = 41/508 (8%)

Query: 314 YFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                E      +   P+    +  +G+    N    ++T Y + + I     L  L   
Sbjct: 102 LLTRKEEELHTILQNMPVMVDALDYNGDFVLWNRECEIVTGYTAEEVIGNPDALQLLYPD 161

Query: 373 PKLSDNNAIKPVML----YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
                    K +         +      +  + TI W+                      
Sbjct: 162 HNYRHEIQKKFLTRGKNFRDWEMRLTCKNGEIKTIMWSN-----------ISEQFPVSGF 210

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
               +  +    +  + K++ +  +L  I +A  D   +   +G I+         F  P
Sbjct: 211 SYWAVGVDITHLKAIEEKLKQQTSELELIFQALPDLCFLTEDDGTIIDYKAGSPTKFYVP 270

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            E  + K F   L  +    +   + ++        +E     +   +           L
Sbjct: 271 AEAFMGKKFYEVLPSSVAQKLQEAICQVKEKGTNVIVEYSLTINESIDFF---EARCLPL 327

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                  + + DI+E K+ +  L+ +  +A           A V+HE+R PLT I GF +
Sbjct: 328 LHDK-IMIIVRDITERKKTEELLNKSDTLA-----AIGQLAAGVAHEVRNPLTVIKGFIQ 381

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
                    +      +Y + +      +  I+ + L I+K +     +  E  ++ +  
Sbjct: 382 ------LFQINKEDQEKYFDLMLSEIERIEAILQEFLSIAKTD----EISTEKKNIYQIF 431

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
              +SL+   A    I +     +    I      +KQ+ +NIL N+I   P GG+I I 
Sbjct: 432 KNVVSLINTKAIMTNIQVELYTDSKDIIIECSENQLKQVFINILQNSIEAMPDGGRISIH 491

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                 + +I+ V D G+G+    +++  +PF         + +GTG+GL L+  +++++
Sbjct: 492 IKEIGKDGIIISVIDKGIGIPEERIKRLGEPFY------STKEKGTGIGLMLSYKIIESH 545

Query: 789 MGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
            G   I S    GT + I  P   +  P
Sbjct: 546 QGNISIMSEVGVGTTVTIYLPKIQSKKP 573


>gi|255039050|ref|YP_003089671.1| histidine kinase [Dyadobacter fermentans DSM 18053]
 gi|254951806|gb|ACT96506.1| histidine kinase [Dyadobacter fermentans DSM 18053]
          Length = 710

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 98/338 (28%), Positives = 172/338 (50%), Gaps = 21/338 (6%)

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
           N A  +L     E       T+   +         +  +L  +     E           
Sbjct: 237 NDAERRLLFLNGELFANLQLTLKTLKAAEEEKARAVRRLLLSETSDEFE-EVNLLFWAGA 295

Query: 538 LLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
           ++ + + I            + ++ +  +    +     +A + +  K +FLA+V+HEIR
Sbjct: 296 MVVMLMTII----------IIRNLVKLYRNDVTIVRYASMATEAAKQKGEFLAQVTHEIR 345

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TPL AIIGFS+++  QR     + +  E  + I  S  ++L +VNDLLD SK+ESGK+ L
Sbjct: 346 TPLNAIIGFSQLMDTQRL----DGQEKESVDAIQSSSRILLTLVNDLLDFSKLESGKLTL 401

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILADLRSVKQIALNILSNAI 716
            ++P +  +AV+E ++L+++ A+EK I I    A  N   +L D   VKQ+ +N+LSNAI
Sbjct: 402 QYQPFNPVDAVNEVVALMRVLASEKNIEIEPKIAIGNRVCLLGDEFRVKQVVINLLSNAI 461

Query: 717 HFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
            FTP+ G++++  +   +E     + +RV+D+G+G+    L++  + F QI  +   +  
Sbjct: 462 KFTPARGKVVVEASLDQSEGQKKCLKIRVKDSGIGIAPEHLKEIFEDFKQIGAASAGK-P 520

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           GTGLGL + K +V+ + GK  + S   KG+  +I  P+
Sbjct: 521 GTGLGLAICKRIVELHGGKISVESVVGKGSEFKIGIPM 558


>gi|220909136|ref|YP_002484447.1| response regulator receiver sensor hybrid histidine kinase
           [Cyanothece sp. PCC 7425]
 gi|219865747|gb|ACL46086.1| response regulator receiver sensor hybrid histidine kinase
           [Cyanothece sp. PCC 7425]
          Length = 587

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 72/284 (25%), Positives = 138/284 (48%), Gaps = 27/284 (9%)

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEK----------ESSHKSDFLARVSHEIRTPLTAI 603
           +        E +Q+  +L + +    +           +  K +F+A VSHE+RTPL AI
Sbjct: 128 FVELFRKNLEVQQQARQLVNQQLEIFRIQAARQQAEAANRMKDEFIAVVSHELRTPLNAI 187

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +G+S+++     G L + R  +    I+R+  +   ++ D+L+++K+  GK++L  + ++
Sbjct: 188 LGWSQLLI---GGKLSSERTQQAIQTIERNARMQAQLIGDILEMTKLTQGKLHLSLQSLN 244

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
           L++ ++  +  +Q  A  K + +++        + AD   ++QI  N+L+NAI FTP+GG
Sbjct: 245 LNDLLASLVESMQPLAEPKGLRLQSQLDPLPRWVNADPVRLRQIFWNLLTNAIKFTPAGG 304

Query: 724 QIII-------------STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           +I +             +T       V + + DTG+G++   L      F Q   S    
Sbjct: 305 EIWVKLETGGTAALSSLTTDSIPASFVKISITDTGIGISPEFLPHVFDRFRQADGSATRA 364

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFPLYDT 813
             G GLGL + + +V+ + G+  +FS    +GT   +  PL  T
Sbjct: 365 QGGLGLGLAIVRQLVELHQGRIEVFSQGRGQGTTFTLHLPLDTT 408


>gi|148359459|ref|YP_001250666.1| sensory box histidine kinase/response regulator [Legionella
           pneumophila str. Corby]
 gi|148281232|gb|ABQ55320.1| sensory box histidine kinase/response regulator [Legionella
           pneumophila str. Corby]
          Length = 910

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 79/248 (31%), Positives = 129/248 (52%), Gaps = 12/248 (4%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E K  +  L   K    ++S  KS+F+A +SHEIRTP+  +IGF+ V+   +  PL    
Sbjct: 278 EEKNIELSLEKKKTE--EKSRQKSEFIANMSHEIRTPMNGVIGFTNVLLESKLDPL---- 331

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
            ++Y   I  S   +L I+ND+LD SKI++GK+NL   P+ +   + E +SL    A++K
Sbjct: 332 QLDYVKTIKSSAQDLLSIINDILDFSKIDAGKLNLDCIPLDIRGCIDEVLSLASPNAHKK 391

Query: 683 RILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----V 737
            I +      N+P  +L D   +KQI  N+++NA+ FT  G  ++I T      +    +
Sbjct: 392 GIDLIPITDINVPKMVLGDPLRIKQIISNLVTNAVKFTDHG-YVLIRTKIEQETDKDYTL 450

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
           +  + DTG+G++  +  K    F Q   S   R  G+GLGL + K + +   G+  + S 
Sbjct: 451 LFTITDTGIGISPEDQTKLFTAFNQADTSITRRYGGSGLGLVICKKLCEEMHGRISLTSE 510

Query: 798 PAKGTLIE 805
             KG+   
Sbjct: 511 INKGSTFS 518


>gi|260060733|ref|YP_003193813.1| PAS/PAC Sensor Hybrid Histidine Kinase [Robiginitalea biformata
            HTCC2501]
 gi|88784863|gb|EAR16032.1| PAS/PAC Sensor Hybrid Histidine Kinase [Robiginitalea biformata
            HTCC2501]
          Length = 1455

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 72/257 (28%), Positives = 137/257 (53%), Gaps = 15/257 (5%)

Query: 567  EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE----VIKNQRFGPLGNPR 622
               +   AK  AE  +  KS FL+ VSHE+RTPLT+++GF++     +  + F  +    
Sbjct: 969  LYEQAREAKARAEDANEAKSAFLSTVSHELRTPLTSVLGFAKIIRKRLTEKIFPAVTVDD 1028

Query: 623  YI---------EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
                       E  + +   G  +  ++ND+LD++KIESG+M+ + +P+ L + +  A+S
Sbjct: 1029 QKIKRTMKQVSENLDVVVSEGERLTTLINDVLDLAKIESGRMDWNMKPIFLQDVIGRAVS 1088

Query: 674  LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
                   EK++ ++ +  +++P I  D   + Q+ +N+LSNA+ FT  G  + I   +  
Sbjct: 1089 ATSSLFEEKKLQLKKNVPDDLPLINGDEDKLIQVVINLLSNAVKFTKKGS-VTID-AYRE 1146

Query: 734  NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
              ++I+ V+DTG+G+   +  K  + F Q  ++   + +GTGLGLP+ + +++ + G  +
Sbjct: 1147 ENQLIVEVQDTGIGIAEEDKHKIFERFRQAGDTLTDKPQGTGLGLPICREIIEHHGGIIW 1206

Query: 794  IFSTPAKGTLIEIIFPL 810
            + S P  G+      P+
Sbjct: 1207 MKSEPGVGSTFFFSIPM 1223


>gi|22126848|ref|NP_670271.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Yersinia pestis KIM 10]
 gi|108806928|ref|YP_650844.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Yersinia pestis Antiqua]
 gi|108812920|ref|YP_648687.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Yersinia pestis Nepal516]
 gi|149366792|ref|ZP_01888826.1| two component sensor kinase/response regulator protein RcsC
           [Yersinia pestis CA88-4125]
 gi|218928376|ref|YP_002346251.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Yersinia pestis CO92]
 gi|270487159|ref|ZP_06204233.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Yersinia pestis KIM D27]
 gi|21959879|gb|AAM86522.1|AE013898_5 sensor for ctr capsule biosynthesis [Yersinia pestis KIM 10]
 gi|108776568|gb|ABG19087.1| two component sensor kinase/response regulator protein RcsC
           [Yersinia pestis Nepal516]
 gi|108778841|gb|ABG12899.1| two component sensor kinase/response regulator protein RcsC
           [Yersinia pestis Antiqua]
 gi|115346987|emb|CAL19878.1| two component sensor kinase/response regulator protein RcsC
           [Yersinia pestis CO92]
 gi|149291166|gb|EDM41241.1| two component sensor kinase/response regulator protein RcsC
           [Yersinia pestis CA88-4125]
 gi|270335663|gb|EFA46440.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Yersinia pestis KIM D27]
          Length = 957

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 95/371 (25%), Positives = 160/371 (43%), Gaps = 29/371 (7%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
             ++E        I+ +   GI+I+   +G  + +N                  +   L 
Sbjct: 359 ALRLEEHEQFNRKIVASAPVGISILRISDGTNILSNELA-------------HNYISLLT 405

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
                     +T I+       ++ +    T     L +  +  +          + D+S
Sbjct: 406 NED----RERITRIICERQANFVDVM----TSNNNNLQISFVHSRYRNEDVAICVLVDVS 457

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
              + +  L      AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R
Sbjct: 458 ARVKMEESLQEMATAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPQGVDR 516

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                  ++ S  L+L I++D+LD SKIES ++ +     S  E ++   +       +K
Sbjct: 517 ---LVTAMNNSSGLLLKIISDILDFSKIESEQLKIEPSEFSTVEVITHITANYLPLVVKK 573

Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
           R+ +      ++PR I  D   ++Q+  N+L+NAI FT +G  II+         +  RV
Sbjct: 574 RLGLYCFIEPDVPRLIEGDPVRLQQVISNLLNNAIKFTDTG-CIILQVRVRD-CYLEFRV 631

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
           RDTGVG+ + E+ +   PF Q+    Q   +GTGLGL + + +V+   G   + S    G
Sbjct: 632 RDTGVGIDSREINQLFDPFFQVGTGVQRHFQGTGLGLAICEKLVNLMDGDVEVISELGMG 691

Query: 802 TLIEIIFPLYD 812
           ++  I  PLY 
Sbjct: 692 SIFAIRIPLYH 702


>gi|126731224|ref|ZP_01747031.1| phosphate regulon sensor histidine kinase, putative [Sagittula
           stellata E-37]
 gi|126708135|gb|EBA07194.1| phosphate regulon sensor histidine kinase, putative [Sagittula
           stellata E-37]
          Length = 345

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 77/360 (21%), Positives = 143/360 (39%), Gaps = 33/360 (9%)

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
           +EA      +I R+  I + N     L G   + I  + F   L       +   +   L
Sbjct: 9   VEAIPLPAVMIRRDERIEAANGPALDLLG---QAIRGRHFITALR---QPGLLDAIETCL 62

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI 577
                +  +       +++    + +    L       +   D++  +Q           
Sbjct: 63  RDGSPRAADY-LTNDGRQDTTYRVTVRAVTLESGRGVLVCFEDVTPMEQI---------- 111

Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR--YIEYANYIDRSGN 635
                  + DF+A VSHE+RTPLTA+IGF E +K    GP  +       + + ++    
Sbjct: 112 ----GQMRRDFVANVSHELRTPLTALIGFIETLK----GPARDDPVGQARFLSIMESEAA 163

Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695
            +  ++ DLL +S++E+ +       +   E     +  ++  A E  + +  S      
Sbjct: 164 RMNRLIGDLLSLSRVEADERVRPTTRIDPAEIARSTLHGLRPIAEEAGVKLDLSVPATPV 223

Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS------NEEVILRVRDTGVGMT 749
            I  D   ++Q+  N+L NAI ++  G  + ++              V L V DTG G+ 
Sbjct: 224 TIPGDEDQLRQVLTNLLENAIKYSGRGATVTVALNAVEYEPRVRGRGVRLTVSDTGPGID 283

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
              L +  + F ++ + +     GTGLGL + K +V+ + G+  + S   KGT   +I P
Sbjct: 284 QIHLPRLTERFYRVDSHRSREMGGTGLGLAIVKHIVNRHRGRLRVDSELGKGTTFTVILP 343


>gi|121590829|ref|ZP_01678155.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae 2740-80]
 gi|121547319|gb|EAX57437.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae 2740-80]
          Length = 1146

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 90/382 (23%), Positives = 160/382 (41%), Gaps = 24/382 (6%)

Query: 441 RINKRKMEIEVMQLC---SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP- 496
           R +++  ++   QL     +L+A    I I + +G ++ TN A  K++    E    +P 
Sbjct: 481 RSSEQVAKLSTEQLRWLTELLDAIPSMIFISDAKGEVVLTNAAYRKIYHTCCEKGCVQPQ 540

Query: 497 --FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554
              +     +        + +    +         +             I   +     Y
Sbjct: 541 PECSFLALPDQHEAEFSIIIQAPKSNCSIGEHYFHVTRRA---------ISHPINQRKYY 591

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
               +DI+E K+ +  L  + + A +    ++ FLA VSHE+RTP+ A++G  E++ ++ 
Sbjct: 592 LTLFNDITELKETEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGLMEILASR- 650

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
              L +            S   +   VND+LD SKIE+ ++ L     +L + +   +  
Sbjct: 651 ---LKSSESQLLLTNAISSAERLKLHVNDILDFSKIEAQQLQLDIGLYNLADELGPLLRG 707

Query: 675 VQLYANEKRILIRTSFANN-IPRILADLRSVKQIALNILSNAIHFTPSGGQI-IISTTHT 732
            +  A  K I     ++ N +     D     QI  N+LSNAI FT  G  +  I     
Sbjct: 708 FEASAQLKEIEFDVIWSPNSLLLANFDALRFNQIVTNLLSNAIKFTDQGRVVFKIDVAPE 767

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
               + + V DTG GMT  ++E    PF Q  ++   R  GTGLG+ +   +++   GK 
Sbjct: 768 ---MLTIVVEDTGCGMTQTQIESLFVPFAQADSTITRRFGGTGLGMSIVANLIELMNGKI 824

Query: 793 YIFSTPAKGTLIEIIFPLYDTS 814
            + S   +GT I++  PL   +
Sbjct: 825 EVKSEFEQGTQIQVNLPLVTQT 846


>gi|221134530|ref|ZP_03560835.1| sensory transduction histidine kinase [Glaciecola sp. HTCC2999]
          Length = 613

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 88/400 (22%), Positives = 168/400 (42%), Gaps = 22/400 (5%)

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
           GI  +         + E    ++   L  ++ G    + E  IL  + ++  +F    + 
Sbjct: 84  GIIRDITKQHHQNVESEFLKQRIALALNTSATGTWDYHVENQILYWDDSMLSIFDLSPQQ 143

Query: 492 ILRK--PFTVFLEQNTPSVMNHYLTEILSL-DLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            + +   +   +  +  +                  +       +   ++  +RI  K  
Sbjct: 144 KVSRFEHWIDLIHPSDRNDFITAFNRGSRGLAENNAILITCRTLSPLGRISYVRINAKFY 203

Query: 549 PFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEK-------ESSHKSDFLARVSHEIR 597
              +        T  D +E +  + ++ +    A++        S+ ++ FLA +SHEIR
Sbjct: 204 MDENKRNLRILGTCIDTTESEISQKEIVNQATKAQENMIIAQDASASRTRFLANMSHEIR 263

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TP+ AI+G  +++++           +   N    S + +L I+ND+LD+SKI++ +M +
Sbjct: 264 TPMNAIMGALQILESYDLDTGS----LNLVNMAIDSSDHLLKIINDILDLSKIDAHQMAI 319

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAI 716
               ++L + ++ AI    L  + K I I  +      P  + D     QI  N++SNAI
Sbjct: 320 ESIGINLQQLLTSAIDKFMLSLD-KDIEINLTIPPEFNPYRVGDPVRFNQIINNLISNAI 378

Query: 717 HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
            FT  G  + I     ++E + L V+DTG+G+  ++L+    PF Q  +S      GTGL
Sbjct: 379 KFTEKGS-VDICL-LGNDESIELSVKDTGIGIPKHQLQNIFSPFKQADDSITRSYGGTGL 436

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           GL +  ++ +   GK  + S    GT      P+  T  P
Sbjct: 437 GLAICTSLTELMSGKLKVTSEEGVGTEFTFQAPMPITDAP 476


>gi|254447054|ref|ZP_05060521.1| multi-sensor hybrid histidine kinase [gamma proteobacterium
           HTCC5015]
 gi|198263193|gb|EDY87471.1| multi-sensor hybrid histidine kinase [gamma proteobacterium
           HTCC5015]
          Length = 821

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 72/246 (29%), Positives = 133/246 (54%), Gaps = 3/246 (1%)

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           +++  KL  A +   +    +S+F+A +SHE+RTPL ++IGFS V+   R   L   + +
Sbjct: 303 QRQALKLEQANQELLEADRLRSEFVANMSHELRTPLNSVIGFSSVLMKNRNQSLL-EKDL 361

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
            +   I R+G  +L ++ND+LD+SKIE+G+M +   PV + + V +   ++Q  A  K +
Sbjct: 362 NFVEKIHRNGKHLLSLINDILDLSKIEAGRMEVELRPVLVQDVVRDTSEMLQTQAEAKNV 421

Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744
            +R     ++P I  D   ++Q+ +N++ NA+ FT  G  + +     S   + + V DT
Sbjct: 422 ALRVEGQLDLPYIQTDGDKLRQVLINLVGNALKFTERGS-VTLKVGVESQ-WLRIDVIDT 479

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G+   +L    +PF Q       +  GTGLGL + +++V+   G+  + S   +G+  
Sbjct: 480 GIGIAEDKLMTVFEPFRQADAGTTRQYGGTGLGLAITRSIVEMLDGRVELDSVQGQGSTF 539

Query: 805 EIIFPL 810
            +  P+
Sbjct: 540 SVYLPM 545


>gi|238897326|ref|YP_002923003.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA, regulates multidrug resistance [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|229465081|gb|ACQ66855.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA, regulates multidrug resistance [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 1209

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 91/392 (23%), Positives = 184/392 (46%), Gaps = 21/392 (5%)

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
           +  E +     + K++ EV    ++L +    + +++R+G I++ N+A +  F     D+
Sbjct: 556 LRREILSRHTIQLKLQEEVTLRETLLNSIPVPVYVVDRDGYIINRNQAWNVFFEQKKMDL 615

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSL---DLRQTLEKITLGSTKEEKLLSLRII--IKK 547
              P + F    +   +   L  I      +   + ++ T+ +  E +++  + +  I +
Sbjct: 616 TEFPLSSFSHPLS--AVYPSLQNIFKNPSIEKTVSAQRYTVNNGLENRIILHQAVPFIDR 673

Query: 548 LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
               +    +  D++ ++     LS  ++ AE+ +  KS FLA +SHEIRTP++AIIG  
Sbjct: 674 TGQPAGLICSWQDMTLYENLLKILSITRERAEQANRAKSTFLATMSHEIRTPISAIIGLL 733

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
           E++   +   + +    E      +S   +L ++ D+LD++KIESGK+ L+   VS  E 
Sbjct: 734 ELVVTSKEHVVSDD---EPIYVAYQSAQSLLGLIGDILDMAKIESGKLELNPAWVSFHEL 790

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQ-I 725
           +   + +    A +K + +        P  +  D    +Q+  N+LSNAI FT  G   +
Sbjct: 791 ILPVVKVFDGLARQKNLRLSCEIKTGHPDEVYIDPMRFRQVLSNLLSNAIKFTEIGSVDV 850

Query: 726 IISTTHTSN-------EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
           ++              + + ++V+DTGVG++  + +   +P+ Q       +  GTGLGL
Sbjct: 851 LVKCISKKEPLETHQIQRLEVKVKDTGVGISQADQKLVFQPYSQSDFG--KKQSGTGLGL 908

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            +   ++    G   + S   +GT +E+  P+
Sbjct: 909 SICLQLMQMMNGSIKLNSELHQGTCVELSVPI 940


>gi|158523273|ref|YP_001531143.1| PAS/PAC sensor hybrid histidine kinase [Desulfococcus oleovorans
           Hxd3]
 gi|158512099|gb|ABW69066.1| PAS/PAC sensor hybrid histidine kinase [Desulfococcus oleovorans
           Hxd3]
          Length = 639

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 86/525 (16%), Positives = 185/525 (35%), Gaps = 49/525 (9%)

Query: 316 DEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
            + +      ++       +   +GN  Y +PS   L  Y     +  +G          
Sbjct: 5   RKEDEKLRMFMEHTSSLVAILDKNGNYEYVSPSHERLLGYSPKALLGTSG-----FGIVY 59

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
             D   +  ++      +        +           +        +          + 
Sbjct: 60  PEDGEWMAKILADGLSGSMDRVYGLEYRALDKEGRVHYLKGNFDSIRDNRANLQNIVFVG 119

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI-L 493
            +  D R +  +++ E  +   ++E +  GI +  ++  I   N     LFGY  ++I  
Sbjct: 120 DDVTDLRESAAELDREKEKFRGLMEGSPLGIFVREKDDAISYVNATFVALFGYTQKEIAT 179

Query: 494 RKPFTVFLEQNTP------SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
              +   +  +              L  +       T + +       EK + L  ++ +
Sbjct: 180 GSDWFQLVYPSVEHRQQILETWKADLETVSPGGSSPTRKHVVTCRDGTEKTVLLFFVVLQ 239

Query: 548 LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
                   +   DI+  +  + +  HA+K+            + ++H+    LT IIG +
Sbjct: 240 TGEQ---LVVCQDITRQESLEAQFLHAQKM-----ESIGRLASGIAHDFNNLLTTIIGNA 291

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
           +                +    I  + +   ++   LL  S+    + + H E +SL+  
Sbjct: 292 DFAL---MDLKPEDDLHDVVREIKDAADRAANLTRQLLAFSR----RQSCHPEELSLNTK 344

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727
           + +   +++     + I +  + A++  R+  D   + Q+ +N++ NA    P GG++ I
Sbjct: 345 LQDTEKMIRRLI-GENIELELALASDAARVEMDPGQLDQVIMNLVVNARDAMPDGGKLTI 403

Query: 728 STTHTS--------------NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
            T                     V+L + DTG+G+     ++  +PF         +G+G
Sbjct: 404 QTARVDLSGDDPVSPVELIPGAYVLLSMTDTGMGIPREVQDQVFEPFFTTK----EKGKG 459

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
           TGLGL     ++  N G   I+S P KGT ++I  P+++   P D
Sbjct: 460 TGLGLSTVYGIIKQNNGNTLIYSEPGKGTTVKIFLPVHE--RPSD 502


>gi|320167758|gb|EFW44657.1| multi-sensor hybrid histidine kinase [Capsaspora owczarzaki ATCC
           30864]
          Length = 1432

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 93/543 (17%), Positives = 178/543 (32%), Gaps = 70/543 (12%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSV----DDIEIA 363
               A   + E       D        +  +  +  AN +F  L K          + + 
Sbjct: 329 EQQRATSSKNEKKYRNIFDNSHEAIVMIDKNDEIIEANRTFFELYKIPRDHRCGSQVTVH 388

Query: 364 GGLSTLLDAPKLSDNNAIKPVML------------YRSDRTCIAASARLHTIQWNRE--- 408
             L+ L D     +   +                    D           +++   +   
Sbjct: 389 FRLAELFDKQSRRELRRVLASTAGTSQTRTCELDSVALDGQAYPIRLVASSLRTAEDDMS 448

Query: 409 --------------NSLAMTFIPFEKANQFP-ENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
                          + +    P             +               +       
Sbjct: 449 ISERTLASSTPGIVPAASTAPEPHATRESAGFRFWRRWTRNAAGASPAATHAQAVRSERS 508

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
              +L+  +             + N +             R P      +     ++ Y 
Sbjct: 509 AQPLLQGPNQSTIS-----HAQAANPSAR-----SEGFTSRLPSADTHCEVDMFDIHDYT 558

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH 573
            E    +                  +            +     + ++++ ++     S 
Sbjct: 559 DEEDDANPVSP----LYQYQPRGTPVP----PGWYRKPTRLVSII-NLTDQRRVNAAESE 609

Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
           A K  ++ +  KS FLA +SHE+RTPL  I+G ++++         N    +Y + I  S
Sbjct: 610 ALKE-KQANEAKSRFLANMSHEVRTPLNCILGMTQIMMTTSL----NNEQSDYLDTIKVS 664

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693
             ++L ++ND+LD SKIE+G++++   P +  +     + L+   A  K +L+       
Sbjct: 665 AQILLTVINDILDFSKIEAGQLSIDAIPFNFVQITENIVDLLFPSAATKNLLLSCFIDPQ 724

Query: 694 IPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV-------ILRVRDTG 745
           +PR+L  D    +QI +N++SN I FT SG    +S     + EV          V DTG
Sbjct: 725 LPRVLVGDPNRFQQILVNLVSNGIKFTTSGS---VSLRCLLDSEVDDDHLLARFEVVDTG 781

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+    L++  + F Q+ +S      GTGLGL + K++V    G   + ST  +G+   
Sbjct: 782 IGIEADALDRLFQRFSQVDSSITRSYGGTGLGLVICKSLVTLMGGTIGVDSTRGEGSRFW 841

Query: 806 IIF 808
              
Sbjct: 842 FTI 844



 Score = 57.7 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 12/136 (8%), Positives = 37/136 (27%), Gaps = 6/136 (4%)

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
                +       +       +        +  +I + + + I +I++   I+  NR   
Sbjct: 311 GTSILLAAYVHHWDLNQLEQQRATSSKNEKKYRNIFDNSHEAIVMIDKNDEIIEANRTFF 370

Query: 483 KLFGYPVEDILRK------PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
           +L+  P +                 ++ +   +   L         +T E  ++    + 
Sbjct: 371 ELYKIPRDHRCGSQVTVHFRLAELFDKQSRRELRRVLASTAGTSQTRTCELDSVALDGQA 430

Query: 537 KLLSLRIIIKKLPFSS 552
             + L     +     
Sbjct: 431 YPIRLVASSLRTAEDD 446


>gi|327480054|gb|AEA83364.1| sensor/response regulator hybrid protein [Pseudomonas stutzeri DSM
           4166]
          Length = 914

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 81/259 (31%), Positives = 136/259 (52%), Gaps = 11/259 (4%)

Query: 567 EKNKLSHAKKIAEKE---SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            K +   +++ AE+    +  KS FLA++SHEIRTPL  ++G  ++++        +   
Sbjct: 388 LKEEGYRSREAAERAASENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRETPL----DRSQ 443

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
             Y + I  SGN ++ ++ND+LD ++I SGK++L      L+  +SE I L    A EK+
Sbjct: 444 QFYLDTISSSGNSLMAVINDILDYARIGSGKLSLEDIDFDLEILISETIRLFTAQALEKQ 503

Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNE--EVIL 739
           + +       +P RI  D   +KQI +N+LSNA+ FT  G   + +S+  T +    ++ 
Sbjct: 504 LSLHVGLEPGVPRRIRGDPTRLKQILMNLLSNALKFTEHGHVLLEVSSRQTQDGSRRLVF 563

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V D+G+GM    L +  + F Q  +S   R  G+GLGL ++K +V+   G   + S P 
Sbjct: 564 CVSDSGIGMRQEVLAQLFESFSQGDSSTTRRYGGSGLGLAISKELVEMMNGHIEVQSAPG 623

Query: 800 KGTLIEIIFPLYDTSHPHD 818
           +G+      PL+  S   D
Sbjct: 624 RGSRFCFEIPLHAASDVED 642


>gi|312887983|ref|ZP_07747567.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM
           18603]
 gi|311299464|gb|EFQ76549.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM
           18603]
          Length = 733

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 98/474 (20%), Positives = 187/474 (39%), Gaps = 45/474 (9%)

Query: 341 LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400
           +   N S  + T     + +      S  L             +    +           
Sbjct: 30  IIQYNFSANMDTMLHGNEKLMQELRASNHLREIDRDILGVESRIRAAIATNDTSHLEGV- 88

Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
                + + S  M ++     +   +   +     + +     + K E+    L   L  
Sbjct: 89  -----DGKVSAIMLYLDSMDNDAAGKTTIKYLRRLKQLSEEKVRIKNELIQRYLR--LGN 141

Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520
            +D   I N    I+S N    ++                 +     +++     I    
Sbjct: 142 MNDTTLIANPHARIIS-N----EITSIT---------HKIYDIRQQKMVSLSRDNITGSR 187

Query: 521 LRQTLEKITLGSTK-EEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579
                  + +G       +L   I                   +  +   KL  ++K   
Sbjct: 188 HASVYGNLLIGVMFISGGVLCWFI-----------LGQFR---QQNKLILKLDASEKRLT 233

Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639
           +    K +FLA +SHEIRTPL +I+GF+ +++ +      +P   E+   I ++G  ++ 
Sbjct: 234 EALQIKENFLANMSHEIRTPLNSILGFTNLLQRRD----KDPDSAEFIESIQKAGENLMA 289

Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-IL 698
           I+ND+LD+SKIE+G M +   P S+   +    +L +   NEK + +  S A+N+P  ++
Sbjct: 290 IINDILDLSKIEAGMMRIVKAPFSVRGLIHSIETLFKERVNEKGLQLNCSVASNVPDTLI 349

Query: 699 ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMTNYELEK 755
            D   + QI +N++ NA+ F+  G  ++++S        + L  +V+DTG+G++N +L+K
Sbjct: 350 GDATRLTQILVNLIGNALKFSDGGMIEVLVSRVWADGSNIQLGVKVKDTGIGISNEKLDK 409

Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             + F Q  +S      GTGLGL + K +++   G   + S P KG+      P
Sbjct: 410 IFERFNQAEDSITRNYGGTGLGLSIVKTLIELQGGNIEVHSIPGKGSEFAFYIP 463


>gi|224588314|gb|ACN58938.1| putative two component fused sensor/regulator transcriptional
           regulator [uncultured bacterium BLR7]
          Length = 642

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 88/515 (17%), Positives = 173/515 (33%), Gaps = 39/515 (7%)

Query: 315 FDEGENLTPETVDKCPI--PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
            D+        V        + +   G +   N        Y   + I      S     
Sbjct: 8   ADDDAGRYRRLVQAVTDYAIYMLDPSGIVISWNAGAQRFKGYTPEEIIGR--HFSRFYTE 65

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
                    + +     +       +    ++ +     A   +     +          
Sbjct: 66  EARKSGLPERALATAAREGK---FESEGWRVRRDGTQFWA-HVVIDPIRDPNGMLTGYAK 121

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVED 491
           I  +  + +I +  +         +++  +D  I +++ +G + + N    ++ GY  E+
Sbjct: 122 ITRDLTERKIAEEALRRSDELFRRLVQGVTDYAIYMLSPKGDVTNWNTGAQRIKGYLPEE 181

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
           I+ K F+ F  +            +        ++K      K+       ++I  +   
Sbjct: 182 IVGKNFSQFYTEEDRQAGEPE-RILDIALKEGRVQKEGWRVRKDGTRFWSHVVIDAIRDD 240

Query: 552 SCYSL----TMHDISEWKQEKNKLSHAKKIAEKES--SHKSDFLARVSHEIRTPLTAIIG 605
               +       DI+E K  + KL  A++   +             V+H+    L AI+G
Sbjct: 241 GGTVMGFAKITRDITERKNAEAKLVQAREALFQSQKMEAIGQLTGGVAHDFNNLLMAILG 300

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
              +++ +      + + +   +      N  + +   +L  ++    +  +   P+ L 
Sbjct: 301 SLSLLRKRL---PEDNQMLRLLDNATAGANRGVALTQRMLAFAR----RQEIDLVPLELP 353

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725
             V     L+   +   +  I T F  ++ R++AD   ++   LNI  NA    P GG I
Sbjct: 354 ALVRGMTELLD-RSVSAQAAIETRFPLSLSRVVADANQLELAVLNICVNARDAMPDGGTI 412

Query: 726 IISTTHT-----------SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           +IS                   V L V DTG GM+   L  A +PF          G+GT
Sbjct: 413 LISAREQQVGPGHATNLPEGRYVCLAVSDTGEGMSEETLAHATEPFFTTKG----VGKGT 468

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GLGL +   M +   G+  + ST  +GT  EI  P
Sbjct: 469 GLGLSMVHGMAEQMGGRLMLKSTKGEGTTAEIWLP 503



 Score = 78.1 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 38/394 (9%), Positives = 111/394 (28%), Gaps = 26/394 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID---PNNHIGDLLKRQNT 142
            + +D  G +   +    +  G    ++IG                P   +     R+  
Sbjct: 27  IYMLDPSGIVISWNAGAQRFKGYTPEEIIGRHFSRFYTEEARKSGLPERALATA-AREGK 85

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
           +  +      +GT  +  + +   PI   N   +G+    I              +R D+
Sbjct: 86  FESEGWRVRRDGTQFWAHVVID--PIRDPNGMLTGYAK--ITRDLTERKIAEEALRRSDE 141

Query: 203 KFSHLHEIKKGHSS-VEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEKY 259
            F  L +    ++  +   K D+ +  +    ++  +  ++        + ++  +  + 
Sbjct: 142 LFRRLVQGVTDYAIYMLSPKGDVTNWNTGAQRIKGYLPEEIVGKNFSQFYTEEDRQAGEP 201

Query: 260 PL---LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
                +  +E  + ++      +  ++        ++++      +       +     +
Sbjct: 202 ERILDIALKEGRVQKEGWRVRKDGTRFWSHVVIDAIRDDGGTVMGFAKITRDITERKNAE 261

Query: 317 EGENLTPETVDKCP--IPFFVYSHGNLFYANPSFLLLTKYKSV--DDIEIAGGLSTLLDA 372
                  E + +          + G     N   + +    S+    +     +  LLD 
Sbjct: 262 AKLVQAREALFQSQKMEAIGQLTGGVAHDFNNLLMAILGSLSLLRKRLPEDNQMLRLLDN 321

Query: 373 --PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
                +   A+   ML  + R  I                L    +  + A +    +  
Sbjct: 322 ATAGANRGVALTQRMLAFARRQEIDLVPLELPALVRGMTELLDRSVSAQAAIETRFPLSL 381

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
           + +  +     +    + +         +A  DG
Sbjct: 382 SRVVADANQLELAVLNICVNAR------DAMPDG 409


>gi|320355008|ref|YP_004196347.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfobulbus propionicus DSM 2032]
 gi|320123510|gb|ADW19056.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfobulbus propionicus DSM 2032]
          Length = 730

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 80/544 (14%), Positives = 178/544 (32%), Gaps = 34/544 (6%)

Query: 274 DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG--ENLTPETVDKCPI 331
           D            +      +      E L+        AY D    E       D    
Sbjct: 186 DIQQQEPQPLRLNRTNPRTSDELDLVSEALNGLCQGGYQAYRDLRIQEQRLRLLFDATEE 245

Query: 332 PFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390
             F V   G   + N     +        +     L+ L    +   ++ +   +    +
Sbjct: 246 AIFGVDPQGRCTFINRVANDILSSTKGQSLLGRDLLAMLASHDQPPSSSLLGRQVQTTIE 305

Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450
              +  +  L  +  +    + +  +      +            +       ++K+E E
Sbjct: 306 ERRVLFTDELPLVLSDG--LIMLISLRSYPVVEQQRCTGAVVFFADIS----RQQKLEQE 359

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
                 I+      I ++N +G+I   N    ++FG+  + +         +    +   
Sbjct: 360 KQLFTRIIRQAPALILVVNADGVIEYVNSIFEQIFGFEAQTLAGTLAQDSFKSLDITPQM 419

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQ 566
             +   ++            G T + + + L   +  +               DI+  +Q
Sbjct: 420 GRVRNKIANGETWVGTF--TGKTMDGRKIVLDATVFPIFDRRGQLTNIVAMGRDITREQQ 477

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
              +L H +K+            A ++HE   PL  I      ++ +      +      
Sbjct: 478 LTEQLHHIQKM-----EAIGKLAASIAHEFGNPLLGIRFALRDVQQRAQLEQDDA---HL 529

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
               +   + +  ++ DL   ++  SG+             + E ++L      +K+I +
Sbjct: 530 LQLAESECDRMRKLIRDLQQFNRPSSGR----KVEFDPHRILEEIMALHHNLLTKKKITV 585

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTP-SGGQIIISTTHTSNEEVILRVRDTG 745
              +     R+ A    ++Q+ +N++ NA      +GG + + T   +  EV++ V D+G
Sbjct: 586 IRDYEPRPIRLHAVEDQMRQVLINLILNATDAMETAGGTLTLRTRL-AGGEVVICVEDSG 644

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
            G+    L++  +PF     +     EGTGLGL ++  +V  + G   + S P + T+  
Sbjct: 645 GGIAEEHLQRIFEPFFTTKAA----VEGTGLGLAVSYGIVRGHGGDITVQSRPGQ-TVFT 699

Query: 806 IIFP 809
           +  P
Sbjct: 700 VTLP 703



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/363 (9%), Positives = 100/363 (27%), Gaps = 14/363 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGKT 147
           ++A G ++ ++    +  G  A  + G    D    L I P    + + +    TW G  
Sbjct: 377 VNADGVIEYVNSIFEQIFGFEAQTLAGTLAQDSFKSLDITPQMGRVRNKIANGETWVGTF 436

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
           T   ++G  + +   +   PI+ R  + +      IV + R     + L ++L       
Sbjct: 437 TGKTMDGRKIVLDATVF--PIFDRRGQLT-----NIVAMGRDITREQQLTEQLHHIQKME 489

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
              K   S   +    +   +     ++ + ++     +     +        L+   + 
Sbjct: 490 AIGKLAASIAHEFGNPLLGIRFALRDVQQRAQLEQDDAHLLQLAESECDRMRKLIRDLQ- 548

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
                     +  + +   +    L +N     +    R++          E+   + + 
Sbjct: 549 QFNRPSSGRKVEFDPHRILEEIMALHHNLLTKKKITVIRDYEPRPIRLHAVEDQMRQVLI 608

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
                  + +   +  A  +  L T+    + +         +    L            
Sbjct: 609 NL----ILNATDAMETAGGTLTLRTRLAGGEVVICVEDSGGGIAEEHLQRIFEPFFTTKA 664

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
             + T +  +     ++ +  +    +  P +                            
Sbjct: 665 AVEGTGLGLAVSYGIVRGHGGDITVQS-RPGQTVFTVTLPARAMPAATGVAPLVGATSAA 723

Query: 448 EIE 450
            +E
Sbjct: 724 RVE 726


>gi|209525455|ref|ZP_03273995.1| GAF sensor hybrid histidine kinase [Arthrospira maxima CS-328]
 gi|209494135|gb|EDZ94450.1| GAF sensor hybrid histidine kinase [Arthrospira maxima CS-328]
          Length = 1019

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 79/254 (31%), Positives = 129/254 (50%), Gaps = 11/254 (4%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
            L    K AE  +  KS+FLA +SHEIRTP+ AI+GF +++K    G + + +   Y + 
Sbjct: 522 ALEEVAKRAEMANRAKSEFLANMSHEIRTPMNAILGFCDLLK----GLVEDDKQQSYLDA 577

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I   G  ++ +++D+LD+SKIE+GK+ L +  V L   + E   +    A  K + ++ +
Sbjct: 578 IAAGGRALISLIDDILDLSKIEAGKLELEYHHVYLPILLQEIQQIFLPTAMAKGLSLQIN 637

Query: 690 FANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTT---HTSNEEVILR--VRD 743
           F  N+P+I+A D   ++QI  NI+ NAI FT  G  + IS        +  + L   V D
Sbjct: 638 FEPNVPKIIAFDEVRLRQILFNIVGNAIKFTEDGS-VTISVRAQNCDDDSRITLEIMVAD 696

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TG+G+   + ++  + F Q       R  GTGLGL + + +     G   + S    G++
Sbjct: 697 TGIGINPDQHQQIFEAFVQSEGQSNRRYGGTGLGLAITRRLTHLLGGTLTLDSQLGLGSV 756

Query: 804 IEIIFPLYDTSHPH 817
               FP    +  H
Sbjct: 757 FTFTFPDVQITQSH 770


>gi|149177489|ref|ZP_01856092.1| probable sensor/response regulator hybrid [Planctomyces maris DSM
           8797]
 gi|148843639|gb|EDL57999.1| probable sensor/response regulator hybrid [Planctomyces maris DSM
           8797]
          Length = 844

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 108/573 (18%), Positives = 222/573 (38%), Gaps = 72/573 (12%)

Query: 290 GTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFL 349
             L++  ++       R    ++   +  +      +    +  +   +    Y + +  
Sbjct: 131 AKLRDRERQYSVRDLLRERTEVNQNLEIQQRRFSLALKAGGMAAWELQNEK-LYWSDAIY 189

Query: 350 LLTKYKSVDDIEIAGGLSTLL--DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
            L              L        P+             R +++          I ++ 
Sbjct: 190 DLLGLPP----GEPVTLERFYSVIHPEDLPKLQEVWEASVRKNQSFE----EEFRILYSG 241

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM--------------- 452
           +    M  +      +        G+  +    ++ +++ +                   
Sbjct: 242 KEQRWMELMGESVEWELGNPGHFAGLFWDITAEKVQEKREQRAAEIERFLSEATMTLAAS 301

Query: 453 -QLCSILEATSD---------GIA-IINREGIILSTNRA---------VSKLFGYPV-ED 491
               + LE+ +           I  +I  +  I     A           +L        
Sbjct: 302 LDFETTLESVTSLCVPTLGDWAILELIGDDHTIRRMKIAHSDPGASILAEQLMQTDSIPS 361

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
           +  +     L  N    + +   E+L   +        L     E L+ + + I+ L F 
Sbjct: 362 LKERSANSHLFGNETIFVENLTEELLQEVVPTPEHLPVLRELGAESLIVVALGIRDLQF- 420

Query: 552 SCYSLTMHD------ISEWKQEKN---------KLSHAKKIAEKESSHKSDFLARVSHEI 596
              +L   D      IS++K  +            +   KI ++ S+ KS+F+A +SHEI
Sbjct: 421 GVLTLIQTDAAHRHKISDFKTAEELARRASIAIDNARLYKIGQQASAAKSEFVANMSHEI 480

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTP+TA++G+++++     G   +P  +++   I ++G+ +LDI+ND+LD+SKIE+GKM 
Sbjct: 481 RTPMTAVLGYADLLA----GSENDPEKLKHLRMIQKNGSFLLDIINDILDLSKIEAGKME 536

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNA 715
              E  + +E +++  S++ + A EK++     +A  IP +I +D + ++QI +N++ NA
Sbjct: 537 CVTEYFAANELIADVYSMMHIRAAEKKLDFSVEYATTIPSQIESDPKRLRQILVNLIGNA 596

Query: 716 IHFTPSGGQIIISTTHTSNEE---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           + FT  G  I +  ++ ++ E   +   V DTG+G+T+ +L +  + F Q   S      
Sbjct: 597 VKFTSEGS-IRLVISYDASGEPPAIQFEVIDTGIGITDAQLSQLFQEFSQGDTSVTRAFG 655

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           GTGLGL ++  +     G   + S    GT   
Sbjct: 656 GTGLGLAISARLARMLGGSIEVHSKSGSGTTFT 688


>gi|46201657|ref|ZP_00054598.2| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 449

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 81/456 (17%), Positives = 167/456 (36%), Gaps = 16/456 (3%)

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
           + +     +L          A+    +       + A A    +         +  +   
Sbjct: 3   LSVLFVFGSLFAVVVAELVAALVAWGMVGHVPAVVWAGAFFAPLAVAPVELAVLVAVIGR 62

Query: 420 KANQFPENMPQNGIEPEDVDTRIN-KRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
             ++            EDV  R   +  +     +L ++ E +  G+A   ++G  L  N
Sbjct: 63  MRDEMGRRRRAEMDLREDVARRREVEAGLRSNEEKLRAMFEMSPLGMARSTQDGAFLEAN 122

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
            A   + GY +E++    F               L  + ++      EK  +   K  + 
Sbjct: 123 SAFLSIVGYDLEELRTLSFWDLTPFRFAENEACNLDSLEAVGHFGPYEKEYI--HKAGRH 180

Query: 539 LSLRIIIKKLPFSSC---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
           + +R+    +  S         + DI+E    +  L    +   + +S    F    SH+
Sbjct: 181 VPVRLSGVLITGSDGESYLWSIVEDITEAHSAEQALIAKTEELARSNSDLEQFAFIASHD 240

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           +R PL  +  +   +  +RFG +  P   +Y  Y       +  +V DLL+ S++  G+M
Sbjct: 241 LREPLRMVSAYM-GMLERRFGSMIGPEGADYIAYAKEGAQRMDRLVLDLLEYSRV--GRM 297

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILADLRSVKQIALNILSN 714
               +PV LDE +   I+ +     +    +  +    +IP I      + Q+  N++ N
Sbjct: 298 EEELQPVPLDEVLDGVIANLSPSIAQCGAQVERAAPLPSIPVIRG---EMVQVLQNLIGN 354

Query: 715 AIHFTPSGGQIIIST-THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
           A+ +      + +            + V D G+G+     ++  + F ++    + R EG
Sbjct: 355 AVKYREPSRPLRVLVSAVRDGGLWRISVADNGIGIAPEFGDRIFRIFQRLH--TRDRFEG 412

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           TG+GL + K +V+ + G+ ++ S    G       P
Sbjct: 413 TGIGLAICKRIVERHGGRIWVDSVQGDGATFSFTLP 448



 Score = 54.3 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 26/330 (7%), Positives = 75/330 (22%), Gaps = 12/330 (3%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTW-YGK 146
                G   E +      +G    ++  +   D++     +      D L+    +   +
Sbjct: 111 RSTQDGAFLEANSAFLSIVGYDLEELRTLSFWDLTPFRFAENEACNLDSLEAVGHFGPYE 170

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                  G   +VP+ L+ + I   + E      + IV      +          ++ + 
Sbjct: 171 KEYIHKAGR--HVPVRLSGVLITGSDGE---SYLWSIVEDITEAHSAEQALIAKTEELAR 225

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
            +   +  + +         +        ++ +  S+             E    +    
Sbjct: 226 SNSDLEQFAFIASHDLREPLRMVSAYMGMLERRFGSMIGPEGADYIAYAKEGAQRMDRLV 285

Query: 267 SSLPEQEDFHTINLNQYTKKQ---YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
             L E      +              G + N S    +  +     +             
Sbjct: 286 LDLLEYSRVGRMEEELQPVPLDEVLDGVIANLSPSIAQCGAQVERAAPLPSIPVIRGEMV 345

Query: 324 ETVDKC-PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
           + +                     S +       +   +   G++              +
Sbjct: 346 QVLQNLIGNAVKYREPSRPLRVLVSAVRDGGLWRISVADNGIGIAPEFGDRIFR--IFQR 403

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLA 412
                R + T I  +     ++ +      
Sbjct: 404 LHTRDRFEGTGIGLAICKRIVERHGGRIWV 433



 Score = 43.9 bits (102), Expect = 0.10,   Method: Composition-based stats.
 Identities = 15/188 (7%), Positives = 38/188 (20%), Gaps = 14/188 (7%)

Query: 274 DFHTINLNQYTKKQYFGTLQNNSKESFEYL-----SHRNHPSLSAYFDEGENLTPETVDK 328
                 +         G +++                     + A     E       + 
Sbjct: 45  PLAVAPVELAVLVAVIGRMRDEMGRRRRAEMDLREDVARRREVEAGLRSNEEKLRAMFEM 104

Query: 329 CPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
            P+        G    AN +FL +  Y  ++++                   A       
Sbjct: 105 SPLGMARSTQDGAFLEANSAFLSIVGY-DLEELRTLSFWD------LTPFRFAENEACNL 157

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
            S                     + +            E+     I  +  +    ++ +
Sbjct: 158 DSLEAVGHFGPYEKEYIHKAGRHVPVRLSGVLITGSDGESYLW-SIVEDITEAHSAEQAL 216

Query: 448 EIEVMQLC 455
             +  +L 
Sbjct: 217 IAKTEELA 224


>gi|323139256|ref|ZP_08074310.1| integral membrane sensor hybrid histidine kinase [Methylocystis sp.
           ATCC 49242]
 gi|322395477|gb|EFX98024.1| integral membrane sensor hybrid histidine kinase [Methylocystis sp.
           ATCC 49242]
          Length = 923

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 94/295 (31%), Positives = 141/295 (47%), Gaps = 9/295 (3%)

Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD-----ISEWKQEKNKLSHA 574
                         +   L  L  I            +M D       E +    +LS A
Sbjct: 362 GGDLDANFEIESRDETGHL--LTAIRSMTGELRELYGSMEDKIRARTRELQMANEELSVA 419

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
           +  AE+ S  KS FLA +SHE+RTPL AIIG+SE+++       G+   +E    I+ +G
Sbjct: 420 RVAAEEASKTKSAFLANMSHELRTPLNAIIGYSEMLQEDALDK-GDAEPLEDLKKIEGAG 478

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
             +L ++ND+LD+SKIE+GKM +  E V +   V+E +S+VQ  A +    +     ++ 
Sbjct: 479 RHLLGLINDILDLSKIEAGKMEVFIEKVDIRPLVNEVMSIVQPLAEKNGNALELVCPDDA 538

Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELE 754
               +D   VKQ  LN++SNA  FT  G ++ +     +   V+ RV DTG+GMT  +L 
Sbjct: 539 GSFHSDETKVKQCLLNLMSNANKFTSKG-KVTLIVERDAQASVVFRVSDTGLGMTEEQLG 597

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +    F Q   S   R  GTGLGL + K   +A  G+  + S P  G+   I  P
Sbjct: 598 RLFLAFTQADASTTKRFGGTGLGLAITKHFCNALGGQISVQSAPDAGSTFTITLP 652


>gi|117624413|ref|YP_853326.1| sensory histidine kinase AtoS [Escherichia coli APEC O1]
 gi|215487438|ref|YP_002329869.1| sensory histidine kinase AtoS [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218559137|ref|YP_002392050.1| sensory histidine kinase AtoS [Escherichia coli S88]
 gi|306814667|ref|ZP_07448829.1| sensory histidine kinase AtoS [Escherichia coli NC101]
 gi|331658299|ref|ZP_08359261.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           TA206]
 gi|115513537|gb|ABJ01612.1| sensor protein AtoS [Escherichia coli APEC O1]
 gi|215265510|emb|CAS09912.1| sensory histidine kinase in two-component regulatory system with
           AtoC [Escherichia coli O127:H6 str. E2348/69]
 gi|218365906|emb|CAR03648.1| sensory histidine kinase in two-component regulatory system with
           AtoC [Escherichia coli S88]
 gi|222033981|emb|CAP76722.1| Signal transduction histidine-protein kinase atoS [Escherichia coli
           LF82]
 gi|281179311|dbj|BAI55641.1| two-component sensor kinase [Escherichia coli SE15]
 gi|294493595|gb|ADE92351.1| sensory box histidine kinase AtoS [Escherichia coli IHE3034]
 gi|305852061|gb|EFM52513.1| sensory histidine kinase AtoS [Escherichia coli NC101]
 gi|307626242|gb|ADN70546.1| sensory histidine kinase AtoS [Escherichia coli UM146]
 gi|312946841|gb|ADR27668.1| sensory histidine kinase AtoS [Escherichia coli O83:H1 str. NRG
           857C]
 gi|320196091|gb|EFW70715.1| Sensory histidine kinase AtoS [Escherichia coli WV_060327]
 gi|323188053|gb|EFZ73348.1| signal transduction histidine-protein kinase atoS [Escherichia coli
           RN587/1]
 gi|323952013|gb|EGB47887.1| hsp90-like protein [Escherichia coli H252]
 gi|323955987|gb|EGB51740.1| hsp90-like protein [Escherichia coli H263]
 gi|330912050|gb|EGH40560.1| sensory histidine kinase AtoS [Escherichia coli AA86]
 gi|331056547|gb|EGI28556.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           TA206]
          Length = 608

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 83/371 (22%), Positives = 171/371 (46%), Gaps = 28/371 (7%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            + +         I+E  +DG+  I+R+G + + N A   + GY   +++ +P+++    
Sbjct: 254 AQALRETRTLNDLIIENAADGVIAIDRQGDVTTMNPAAEVITGYQRHELVGQPYSMLF-- 311

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMH 559
              +     + + L                ++ + + L +   ++  +        +   
Sbjct: 312 -DNTQFYSPVLDTLEHGTEHV-ALEISFPGRD-RTIELSVTTSRIHNTHGEMIGALVIFS 368

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           D++  K+ + +++ A+++A        + +A V+HE+R PLTAI G+ ++++ Q   P+ 
Sbjct: 369 DLTARKETQRRMAQAERLAT-----LGELMAGVAHEVRNPLTAIRGYVQILRQQTRDPI- 422

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
              + EY + + +  + +  ++  LL+ S+    +    ++ VSL+  V E + LVQ   
Sbjct: 423 ---HQEYLSVVLKEIDSINKVIQQLLEFSRPRHSQ----WQQVSLNALVEETLVLVQTAG 475

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
            + R+   +   N +  I AD   +KQ+ LNIL NA+    + G+I I T   S+ +  +
Sbjct: 476 VQARVDFISELDNELSPINADRELLKQVLLNILINAVQAISARGKIRIRTWQYSDSQQAI 535

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            + D G G+     +K   PF     S      GTGLGL L++ +++A+ G   + S P 
Sbjct: 536 SIEDNGSGIDLSLQKKIFDPFFTTKAS------GTGLGLALSQRIINAHQGDIRVASLPG 589

Query: 800 KGTLIEIIFPL 810
            G    +I P+
Sbjct: 590 YGATFTLILPI 600



 Score = 40.4 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/117 (10%), Positives = 37/117 (31%), Gaps = 6/117 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G +  ++       G    +++G     +    +    + + D L+          
Sbjct: 278 IDRQGDVTTMNPAAEVITGYQRHELVGQPYSMLF--DNTQFYSPVLDTLEHGTEHVALEI 335

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
            +P     + + +  +   I++ + E  G     I        + +    + ++  +
Sbjct: 336 SFPGRDRTIELSVTTS--RIHNTHGEMIGA--LVIFSDLTARKETQRRMAQAERLAT 388


>gi|298490277|ref|YP_003720454.1| response regulator receiver sensor signal transduction histidine
           kinase ['Nostoc azollae' 0708]
 gi|298232195|gb|ADI63331.1| response regulator receiver sensor signal transduction histidine
           kinase ['Nostoc azollae' 0708]
          Length = 446

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 75/247 (30%), Positives = 138/247 (55%), Gaps = 2/247 (0%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E ++++ ++        + S  K+ FLA +SHE RTP+ AIIGFS+++   +FG L N +
Sbjct: 152 ELERQREQIQLQNLRLLEASRLKTKFLATISHEFRTPMNAIIGFSQILLRPKFGQL-NSQ 210

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
            ++    I  +G  +L ++N++LD SK+ESG++ L  E + L++ V+ ++S +   A  K
Sbjct: 211 QVDMVERILNNGKHLLMLLNEVLDFSKLESGRLELKPEILDLEKIVNNSVSEIMSLAEAK 270

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           ++ +          I  D   V+QI +N+L+NA+ FT SGG I +     +   + + +R
Sbjct: 271 KLSLVVETDLQNTLIFNDSVRVRQILINLLANAVKFTESGG-IWVEVKEITQNRLTITIR 329

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG+G+++ + +   + F Q+      +  GTGLGL +  ++V    GK ++ S    G+
Sbjct: 330 DTGIGISSKDFKHIFEAFRQVDQGISRKYPGTGLGLAITDSLVQMMGGKIFLESKLGVGS 389

Query: 803 LIEIIFP 809
           + +I  P
Sbjct: 390 IFKIELP 396


>gi|89897563|ref|YP_521050.1| hypothetical protein DSY4817 [Desulfitobacterium hafniense Y51]
 gi|89337011|dbj|BAE86606.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 564

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 79/253 (31%), Positives = 143/253 (56%), Gaps = 5/253 (1%)

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
               +DI E +Q   +L  A +   +++ +KSDFLA +SHE+RTPLT+II F+EV+  ++
Sbjct: 300 LARANDILESQQI--QLEEANRRLREDNQYKSDFLAIISHELRTPLTSIIAFAEVL--EK 355

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                 P+  +    I  +  ++L ++N++L+I++IE+GK  L  EP+ L + ++   S+
Sbjct: 356 ASEDKCPKEQKITQEIRANSQVLLRMINNILEIARIEAGKQELIIEPIDLVDVINAVESV 415

Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-TS 733
           ++    +K I   +   +++P I  D   +++I  N+LSNA+ FTP GG+I +   +   
Sbjct: 416 IEPLIEKKSIQYSSVLHSDVPVIEGDREGLRRIVENLLSNALKFTPEGGEIKVWVAYDQE 475

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
             EV++ V+D G+G+   +     + F Q  +S   +  G+GLGL LAK + + + G   
Sbjct: 476 RNEVLINVQDNGIGIRKEDQPYIFEKFVQSDSSIHRQYNGSGLGLALAKELAELHGGWIK 535

Query: 794 IFSTPAKGTLIEI 806
           + S   KG+L  +
Sbjct: 536 VVSELDKGSLFTV 548


>gi|313887781|ref|ZP_07821463.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312846390|gb|EFR33769.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 602

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 88/371 (23%), Positives = 156/371 (42%), Gaps = 30/371 (8%)

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR-KPF 497
           + R +  KM++E  +L +I    ++G+  I+R+  ++  N    K+     +D  R    
Sbjct: 248 ELRESIEKMDLERSKLDTIFNYMAEGVIAIDRKNRLIHANSIAKKILNISEKDFNRVINL 307

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT 557
                 N        L       +  +  KI     K +  +           +S   + 
Sbjct: 308 KSINLYNIDYKNEESLRGEELTKIANSFYKIKYAPYKSDAFI-----------NSGLIIV 356

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
           + D+                       + +F+A VSHE++TP+T I  ++E + +     
Sbjct: 357 LQDV--------------DKEHMLDIMRKEFVANVSHELKTPITTIKSYTETLLD---SD 399

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
           L       +   IDR  + +  IV DLL +S I+  K NL    +   E ++EAI    +
Sbjct: 400 LDKKSQRNFLKIIDRENSRMSRIVTDLLYLSNIDYNKDNLTLSSIDTYEFIAEAIESQSI 459

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737
              +K   I  +   +I  I AD     QI  NI+SNA  +TP  G+I+I       + V
Sbjct: 460 LIVQKNHKIELNIDMDIKDIYADRSGADQILTNIISNACKYTPENGKIVID-ATNKGDLV 518

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
            ++V D G+G+   +L +  + F ++   +  +  GTGLGL +A  M+ +  G   + S 
Sbjct: 519 EIKVTDNGIGIPKEDLPRITERFYRVEKGRSRQMGGTGLGLSIANEMIKSFGGSLKVDSV 578

Query: 798 PAKGTLIEIIF 808
             +GT I ++F
Sbjct: 579 FGEGTTITLLF 589


>gi|288942026|ref|YP_003444266.1| PAS/PAC sensor signal transduction histidine kinase [Allochromatium
           vinosum DSM 180]
 gi|288897398|gb|ADC63234.1| PAS/PAC sensor signal transduction histidine kinase [Allochromatium
           vinosum DSM 180]
          Length = 556

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 95/452 (21%), Positives = 179/452 (39%), Gaps = 27/452 (5%)

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
              +    L       IA       +  +    L ++ +  E      E      I+ ++
Sbjct: 3   RRPLDFNQLRERAERAIAEGQASLALDQDGSRVLELSHLIEELRVYQAE----LEIQNDE 58

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK-P 496
           +    +   + +E  +      +      +++  G I+ TN    ++ G      L++  
Sbjct: 59  LIQAQDHIALAME--RYRRFFASLPMPAIVVDASGFIVETNEQACEVLGISRHVALQRGS 116

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--Y 554
                +  + + ++  +  +L +   Q          + E    + ++      S     
Sbjct: 117 LFQLFDFPSRTRLHSLMRTVLDVGPYQLESMALKAGGEGEASFDVHLMPLSESRSDGRQI 176

Query: 555 SLTMHDISE---WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
            + + D S     +   ++L  AK  AE+ +  KS FLA + HE+RTP+ A+IG S ++ 
Sbjct: 177 LVVLVDRSAEQALRALSHELIQAKLAAEQANVAKSAFLANMGHELRTPMNALIGLSNLLL 236

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
           +        P   +Y   I  S   +  ++ND+LD SK+ESG + L   P++LD  +   
Sbjct: 237 DG--SEAMTPHQRDYLLKIHDSAAALSSLLNDILDYSKVESGYLRLESTPLNLDNILDRT 294

Query: 672 ISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSG----GQII 726
             L    A EK +      A  +P +L  D   ++Q+  +++ NAI FT  G    G ++
Sbjct: 295 RQLYMPCAEEKGLAFSCVRAPEVPPVLAGDPLRIQQVLDHLVDNAIEFTERGSVRVGVVL 354

Query: 727 I--------STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
           +         T       +   + DTG+G+T  + +    PF Q   S      GTGLGL
Sbjct: 355 VAAPARVASKTAAGERLVLRFSIEDTGIGLTPEQCQALFAPFQQADMSASRVHGGTGLGL 414

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            L + +V+   G+  + S   +G+      PL
Sbjct: 415 SLCQRLVELMSGEIGVESRLGEGSTFWFTVPL 446


>gi|256424541|ref|YP_003125194.1| GAF sensor hybrid histidine kinase [Chitinophaga pinensis DSM 2588]
 gi|256039449|gb|ACU62993.1| GAF sensor hybrid histidine kinase [Chitinophaga pinensis DSM 2588]
          Length = 1203

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 113/693 (16%), Positives = 238/693 (34%), Gaps = 50/693 (7%)

Query: 131 NHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVD 190
             +  L+ R+ +   ++      G  +      +   I    R             + ++
Sbjct: 111 EQLRLLVVRRQSLLRESIQVRKAGQIISFDTLQSGRIIMDDARRLV----------STME 160

Query: 191 NDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK 250
           +  + L        + +         +      + +        R  ++ S L       
Sbjct: 161 DREKRLLVIRTANLNRISGYTPLLIVIAALLALLITSVFYIRVKRDFDERSRL------- 213

Query: 251 DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310
            + L+ +   +    +      E     + +   + +    L + S    +         
Sbjct: 214 QEALEEKDREITRRIDIIRSIAEKISAGDYSIRVRDEEKDGLGSLSVSLNKMALSLETSF 273

Query: 311 LSAYFDEGENLTPETVDKCPIP--FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
                 E        ++   +         G++      FL    +  V  + + G  + 
Sbjct: 274 NELADKEWHQTGVAGLNDRMVGEKNVETLTGHIV----EFLAEYTHSQVGALYLTGPDNR 329

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI----PFEKANQF 424
           L  +   +  N      +          +    T+         +T           N  
Sbjct: 330 LYLSGSFALANTANRREIPIGQGMVGQCAISGKTLLLQDITPENITISYASGEIRPRNIV 389

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
              +   G     ++          ++  L S++     G++I   E       R V +L
Sbjct: 390 AVPIHYEGYVRGVIELASLTAYTPNDLAFLESVMHNI--GLSINTSENR-----RRVQEL 442

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
                             +N  + +     ++ + +    +++  L    +E        
Sbjct: 443 LEETQAQSEELQVQHGELENINTELEAQAQKLQASEEELRVQQEELQQANQELEER---- 498

Query: 545 IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
             +L       +   ++   K+ +          E  + +KS+FLA +SHE+RTPL +I+
Sbjct: 499 -SRLLEDRNQVIVERNLEIQKKAEE--------LEISTKYKSEFLANMSHELRTPLNSIL 549

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
             S ++       L +   IE A  I  SG  +L++++++LD+SKIE+GKM+L + PV +
Sbjct: 550 LLSRLMAENNEKNLSDD-QIESAQVIQSSGKGLLNLIDEILDLSKIEAGKMDLEYAPVPV 608

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG 723
            E  ++  +L    A EK + +     ++ P  I  D   ++QI  N+LSNA+ FT  G 
Sbjct: 609 HEICNDMEALFGPIAREKNLALNVQVMSDAPALIETDKMRLEQILKNLLSNALKFTAKGA 668

Query: 724 -QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
             + ++        V   VRDTG+G+   + +   + F Q   S + +  GTGLGL +++
Sbjct: 669 VTLQVTAVAQDPSIVRFAVRDTGIGIPVEKQQVIFEAFKQADGSTRRKYGGTGLGLSISR 728

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            +     G+  + S P  G+   +  PL    +
Sbjct: 729 ELAKLLGGEIRLESEPGHGSEFVVTIPLRPQEN 761


>gi|229134443|ref|ZP_04263256.1| hypothetical protein bcere0014_33540 [Bacillus cereus BDRD-ST196]
 gi|228649064|gb|EEL05086.1| hypothetical protein bcere0014_33540 [Bacillus cereus BDRD-ST196]
          Length = 516

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 99/531 (18%), Positives = 194/531 (36%), Gaps = 40/531 (7%)

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTK 353
           +S +   + +                +     +  P     +   G + + NPS   +  
Sbjct: 13  SSTQKKRHPNVSERLRNHIQNRSLAEMYASLFEHNPDSIISLNLEGVILHINPSAERILG 72

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
           Y S + +E     S L       + +    V+ Y  +         + +I       L  
Sbjct: 73  YTSNE-LERKTITSIL-------EAHISDQVLQYIKNAAADNQKEYIVSIYHKDGYLLDA 124

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
                    +         ++P +   RI ++ ++    +L +++ +    +   + EG 
Sbjct: 125 VTKLVPIFVKNRLTGVYAIMKPLEKSERI-EKVLQESEKRLRTLMNSMPAFVIFKDHEGR 183

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV----MNHYLTEILSLDLRQTLEKIT 529
            L  N      F +       K     ++ N            + E+     +    +  
Sbjct: 184 WLEANDYALSCFNFHNVPYHGKRDNELIQYNEAYRESFLHCEEVDELTWQKGQILHGEEF 243

Query: 530 LGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
           +    +  L+ L I    L           +   D++E K+ +  L  ++K+A       
Sbjct: 244 IIHRNDFDLV-LSISKVPLFHPDGSRKGLIVMGRDVTELKETEKLLRKSEKLAVV----- 297

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
               A ++HEIR PLT++ GF  ++      P  N     Y + +    + +  I +  +
Sbjct: 298 GQLTAGIAHEIRNPLTSLKGFLTLL-----HPEINEENKWYVDVMLSEISQMESITSQFM 352

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
            +SK +     L     ++   + E ++ +   A    + I     + I  I  D   +K
Sbjct: 353 AMSKPQ----VLSIHTCNVQTLIEEVVTFILPTAIMHSVHIIMDHFDYISDIQCDSNQLK 408

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           Q+ +NIL NAI   P GG I I TT   N+ V +R+ D G G+    + +  +PF     
Sbjct: 409 QVLINILKNAIEAMPDGGNIFIQTTSLENDFVSIRIMDEGCGIPEERMARLGEPFY---- 464

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
              ++ +GTGLGL +   ++  + GK +I S    GT ++I  P+  T+ P
Sbjct: 465 --SLKEKGTGLGLMMCYKIIQEHHGKLFISSELNIGTTVDIQLPIA-TAQP 512



 Score = 41.2 bits (95), Expect = 0.86,   Method: Composition-based stats.
 Identities = 22/257 (8%), Positives = 63/257 (24%), Gaps = 16/257 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ++  G +  I+    + +G  + ++    +  + +    D            N      +
Sbjct: 54  LNLEGVILHINPSAERILGYTSNELERKTITSILEAHISDQVLQYIKNAAADNQKEYIVS 113

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           ++  +G    +      +PI+ +NR  +G   + I+           + +  +K+   L 
Sbjct: 114 IYHKDG--YLLDAVTKLVPIFVKNR-LTGV--YAIMKPLEKSERIEKVLQESEKRLRTLM 168

Query: 209 EIKKGHSSVEKEKYDIFSQQSPP-----PHLRMKNKVSSLTEYYAHKDDVLK----TEKY 259
                    +  +                H    +          ++          E  
Sbjct: 169 NSMPAFVIFKDHEGRWLEANDYALSCFNFHNVPYHGKRDNELIQYNEAYRESFLHCEEVD 228

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
            L   +   L  +E     N            L +        +      +     ++  
Sbjct: 229 ELTWQKGQILHGEEFIIHRNDFDLVLSISKVPLFHPDGSRKGLIVMGRDVTELKETEKLL 288

Query: 320 NLTP--ETVDKCPIPFF 334
             +     V +      
Sbjct: 289 RKSEKLAVVGQLTAGIA 305


>gi|261221148|ref|ZP_05935429.1| histidine kinase [Brucella ceti B1/94]
 gi|261314866|ref|ZP_05954063.1| histidine kinase [Brucella pinnipedialis M163/99/10]
 gi|261316576|ref|ZP_05955773.1| histidine kinase [Brucella pinnipedialis B2/94]
 gi|261751241|ref|ZP_05994950.1| histidine kinase [Brucella suis bv. 5 str. 513]
 gi|261755806|ref|ZP_05999515.1| histidine kinase [Brucella suis bv. 3 str. 686]
 gi|265987648|ref|ZP_06100205.1| histidine kinase [Brucella pinnipedialis M292/94/1]
 gi|265992123|ref|ZP_06104680.1| histidine kinase [Brucella melitensis bv. 1 str. Rev.1]
 gi|265993860|ref|ZP_06106417.1| histidine kinase [Brucella melitensis bv. 3 str. Ether]
 gi|265997108|ref|ZP_06109665.1| histidine kinase [Brucella ceti M490/95/1]
 gi|260919732|gb|EEX86385.1| histidine kinase [Brucella ceti B1/94]
 gi|261295799|gb|EEX99295.1| histidine kinase [Brucella pinnipedialis B2/94]
 gi|261303892|gb|EEY07389.1| histidine kinase [Brucella pinnipedialis M163/99/10]
 gi|261740994|gb|EEY28920.1| histidine kinase [Brucella suis bv. 5 str. 513]
 gi|261745559|gb|EEY33485.1| histidine kinase [Brucella suis bv. 3 str. 686]
 gi|262551576|gb|EEZ07566.1| histidine kinase [Brucella ceti M490/95/1]
 gi|262764841|gb|EEZ10762.1| histidine kinase [Brucella melitensis bv. 3 str. Ether]
 gi|263003189|gb|EEZ15482.1| histidine kinase [Brucella melitensis bv. 1 str. Rev.1]
 gi|264659845|gb|EEZ30106.1| histidine kinase [Brucella pinnipedialis M292/94/1]
 gi|326410096|gb|ADZ67161.1| histidine kinase [Brucella melitensis M28]
          Length = 843

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 131/724 (18%), Positives = 263/724 (36%), Gaps = 49/724 (6%)

Query: 110 AFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN--TWYGKTTLWPIEGTNLYVPIDLAALP 167
              ++G                  G  L+ Q+        +    +     + ++     
Sbjct: 134 RADVVGQLPDACGAPQDRPAFLAFGRWLRPQSVTALERAISTLREQARAFDLTVETVNGS 193

Query: 168 IYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ 227
           +   +   SG  GF +    +     +A    L+ +   L +  +    +          
Sbjct: 194 LLDVHGRTSG--GFAVA-CFQSLQGVQAERASLEAQNRELADRIELMRRLLDRIEQPAWL 250

Query: 228 QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287
           +     +   N   +     A+    + +E   L  ++     E++ F    + +     
Sbjct: 251 RDGNGRIEWVNLAYAQAVDMANASQ-VISEGRELFGAQARQRLERDRFAEPVVQEQLTAV 309

Query: 288 YFGTLQ--------NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG 339
             G  +          S             ++            ET+D+      ++   
Sbjct: 310 VHGDRRVFDVIDVSAESGSVGLGFDLTEVQAVRDELSRTLKSHAETLDQLSTAVAIFDPE 369

Query: 340 -NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398
             L + N +F+ L     V  +E     + + D  +       +P      D    A  A
Sbjct: 370 MKLQFFNQAFVKLWGL-DVAWLETRPSNTLIFDRLRAEGKLPEQPEWRKWKDSLLSAYRA 428

Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI- 457
                    E    M  +P  +  +   N    G      +    K ++E     L  + 
Sbjct: 429 V--------EPEEHMWHLPDTRTMRVVANPHPQGGVTWFFENMTEKFELEGRYNTLIKVQ 480

Query: 458 ---LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYL 513
              L+  ++ +A+   +G +  +N + + L+  P E +      ++  +       +   
Sbjct: 481 GETLDHLAEAVAVFGSDGRLRLSNPSFAALWSLPSEMVREGTHISIIAKLCNQRGGDGLW 540

Query: 514 TEILSLDLRQTLEKITL---GSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570
            + +S       ++          +  +LS  ++           LT  D+++  + +  
Sbjct: 541 EDFVSTVTGFLDQRDGRMGQVELSDGAILSFAVVPLP---KGQTMLTFIDVTDTVRVERA 597

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           L    +  E     K+DF+  VS+E+R+PLT IIGF+E+++   FG L N R +EY ++I
Sbjct: 598 LKEKNEALELADQIKNDFVQHVSYELRSPLTNIIGFTELLQTPAFGSL-NERQLEYLDHI 656

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
             S +++L IVND+LD++ +++G M L    VS+ EA+S A S V     +  I +    
Sbjct: 657 STSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEAISAAASRVSERLRDHNIGLDVDI 716

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
           A+++    AD   V+Q+  N+LSNA+++ P G  I++        +V+  V D G GM +
Sbjct: 717 ADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVLQVA-RDGADVVFAVHDDGHGMPS 775

Query: 751 YELEKAMKPFGQIPN-----SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
             L+   K F   PN        +          + K+ V+ + G+  I +   +GT + 
Sbjct: 776 EVLDTVFKRFQSYPNGGRRRGAGLGLA-------IVKSFVELHGGRVEIDTGEERGTTVI 828

Query: 806 IIFP 809
             FP
Sbjct: 829 CRFP 832


>gi|160943338|ref|ZP_02090573.1| hypothetical protein FAEPRAM212_00824 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445364|gb|EDP22367.1| hypothetical protein FAEPRAM212_00824 [Faecalibacterium prausnitzii
           M21/2]
          Length = 1084

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 79/255 (30%), Positives = 132/255 (51%), Gaps = 9/255 (3%)

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           S+ ++   KL  A + AE  +  KS FL+ +SH+IRTP+ AIIGF+ +  +         
Sbjct: 551 SDTQELNAKLQVAVEKAESANRAKSTFLSNMSHDIRTPMNAIIGFTTLALSNID---DTD 607

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
           R  +Y      S N +L ++ND+LD+S+IESGK++L    V+L + + +  ++V      
Sbjct: 608 RVKDYLGKTLASSNHLLSLINDVLDMSRIESGKIHLEEVEVNLSDVLHDLKTIVSGQIYA 667

Query: 682 KRILIRTSF-ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN-----E 735
           K++ +           +  D   + QI LN+LSNAI FTP+GG + +     +       
Sbjct: 668 KQLELYMDVMDVTDEDVYCDKTRLNQILLNLLSNAIKFTPAGGTVSVRVRQLAGKVRGCG 727

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
           +   R++D G+GM+    +K  +PF +   S   R +GTGLG+ + K +VD   G   + 
Sbjct: 728 QYEFRIKDNGIGMSQEFAQKIFEPFERERTSTVSRIQGTGLGMAITKNIVDMMGGTIEVQ 787

Query: 796 STPAKGTLIEIIFPL 810
           +   KGT   +  P+
Sbjct: 788 TAQGKGTEFTVCVPM 802


>gi|123473622|ref|XP_001319998.1| ATPase [Trichomonas vaginalis G3]
 gi|121902794|gb|EAY07775.1| ATPase, putative [Trichomonas vaginalis G3]
          Length = 1406

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 77/332 (23%), Positives = 143/332 (43%), Gaps = 14/332 (4%)

Query: 491  DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
             +        + ++        L + +        +   +    +     + +  +   F
Sbjct: 826  RMNWSTVDEQVHEDYKEQFAKKLRQAIDESGWIESDLPII---SDGVETWVSVRGQGDCF 882

Query: 551  SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
            +      + DI++ +    +L    + AE+ +  K+ FLA +SHEIRTP+  I G  +V+
Sbjct: 883  ARRIIGVLIDITDNRNAFMELEEKGQAAEQANREKTQFLANMSHEIRTPMNGIFGMLDVL 942

Query: 611  KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
              Q              + I  S   ++ +++D L++SKIE G++      V+L + +  
Sbjct: 943  AYQEL----TQEQRLLVDSIRSSSFQLMRLLDDTLNLSKIEQGELESTPTTVNLLKIIEP 998

Query: 671  AISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIII-- 727
             +      A   +I      + N P  + AD + + QI  N+LSNA+ FT  GG + +  
Sbjct: 999  TMIANSSRARMSKISFSIIVSKNFPTLVYADSQLIMQIINNLLSNALKFTKKGG-VTLKM 1057

Query: 728  ---STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
               ST  + NE +++ V DTG+G++  + +   + F Q   S      GTGLGLPL + +
Sbjct: 1058 KWDSTPTSDNEYLVVSVSDTGIGISEEQKKVIFERFMQAETSTSRYYGGTGLGLPLVQEI 1117

Query: 785  VDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
                 G   + STP +G+   +  P+     P
Sbjct: 1118 ARFLGGNVDVQSTPGEGSTFIVRIPMQSLMLP 1149


>gi|307554286|gb|ADN47061.1| sensor protein AtoS for response regulator AtoC [Escherichia coli
           ABU 83972]
          Length = 608

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 94/467 (20%), Positives = 199/467 (42%), Gaps = 30/467 (6%)

Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
            +   +   +I      + L +  +         +++  +    I+    +   +    N
Sbjct: 158 SMIPIERNGEILGYIWANELTEDIRRQAWKMDARIIIVLTAGLLISLLLIVLFSRRLSAN 217

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN--KRKMEIEVMQLCSILEATSDGIAI 467
              +T      A   P  +PQ   E   +   +N   + +         I+E  +DG+  
Sbjct: 218 IDIITDGLSTLAQNIPTRLPQLPGEMGQISQSVNNLAQALRETRTLNDLIIENAADGVIA 277

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
           I+R+G + + N A   + GY   +++ +P+++       +     + + L          
Sbjct: 278 IDRQGDVTTMNPAAEVITGYQRHELVGQPYSMLF---DNTQFYSPVLDTLEHGTEHV-AL 333

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
                 ++ + + L +   ++  +        +   D++  K+ + +++ A+++A     
Sbjct: 334 EISFPGRD-RTIELSVTTSRIHNTHGEMIGALVIFSDLTARKETQRRMAQAERLAT---- 388

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
              + +A V+HE+R PLTAI G+ ++++ Q   P+    + EY + + +  + +  ++  
Sbjct: 389 -LGELMAGVAHEVRNPLTAIRGYVQILRQQTRDPI----HQEYLSVVLKEIDSINKVIQQ 443

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703
           LL+ S+    +    ++ VSL+  V E + LVQ    + R+   +   N +  I AD   
Sbjct: 444 LLEFSRPRHSQ----WQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSPINADREL 499

Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
           +KQ+ LNIL NA+    + G+I I T   S+ +  + + D G G+     +K   PF   
Sbjct: 500 LKQVLLNILINAVQAISARGKIRIRTWQYSDSQQAISIEDNGSGIDLSLQKKIFDPFFTT 559

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             S      GTGLGL L++ +++A+ G   + S P  G    +I P+
Sbjct: 560 KAS------GTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILPI 600



 Score = 40.4 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/117 (10%), Positives = 37/117 (31%), Gaps = 6/117 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G +  ++       G    +++G     +    +    + + D L+          
Sbjct: 278 IDRQGDVTTMNPAAEVITGYQRHELVGQPYSMLF--DNTQFYSPVLDTLEHGTEHVALEI 335

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
            +P     + + +  +   I++ + E  G     I        + +    + ++  +
Sbjct: 336 SFPGRDRTIELSVTTS--RIHNTHGEMIGA--LVIFSDLTARKETQRRMAQAERLAT 388


>gi|163750003|ref|ZP_02157247.1| sensor histidine kinase/response regulator [Shewanella benthica
           KT99]
 gi|161330277|gb|EDQ01258.1| sensor histidine kinase/response regulator [Shewanella benthica
           KT99]
          Length = 937

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 87/251 (34%), Positives = 134/251 (53%), Gaps = 8/251 (3%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  AKK A + S  KS+FLA +SHE+RTPL  +IGF++ +         +    +Y N 
Sbjct: 287 ELDLAKKRALEASRIKSEFLANMSHELRTPLNGVIGFAKQLLKTPL----HSSQQDYVNT 342

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I++S   +L  +ND+LD SK+E+GKM L   P +L E + + I+L+   A +K I +   
Sbjct: 343 IEKSATNLLGSINDILDFSKLEAGKMVLENMPFALRETLDDTITLLSNSARDKDIELVVD 402

Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILR--VRDTG 745
              +IP  +  D     QI  N++ NAI FT SG   + +     ++++V LR  V DTG
Sbjct: 403 IDPSIPEDLSGDAMRFSQIITNLVGNAIKFTESGSVHLKLQLIEATDDKVKLRCEVIDTG 462

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+   + E   + FGQ  +S   R  GTGLGL + K +V+   G+    S P  G+   
Sbjct: 463 IGIDEDQQELLFQAFGQADSSISRRFGGTGLGLIITKRLVNRMGGQIGCHSKPNTGSTFW 522

Query: 806 IIFPLYDTSHP 816
              PL  + +P
Sbjct: 523 FTLPLGTSIYP 533


>gi|254227799|ref|ZP_04921230.1| conserved hypothetical protein [Vibrio sp. Ex25]
 gi|151939841|gb|EDN58668.1| conserved hypothetical protein [Vibrio sp. Ex25]
          Length = 790

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 83/258 (32%), Positives = 135/258 (52%), Gaps = 11/258 (4%)

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
               + E +++ +++ HAK+ A   +  KS FLA +SHEIRTPL  I+G +E++      
Sbjct: 263 VNRVVEEKQRQTDEILHAKESAVSANRAKSVFLANMSHEIRTPLNGIMGMTEILSQSELS 322

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
                   E  + ID S   +L ++ND+LD+SKIESG++ L      + E V +++ L Q
Sbjct: 323 S----HQQEVVDDIDSSSQTLLTLLNDILDLSKIESGRLELSLVEADIREVVYQSMVLFQ 378

Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
             A  K++ +  + A NIP R++ D   +KQ+  N++SNA+ FT SG  I +  ++    
Sbjct: 379 SKATSKQLELGINLAENIPTRVMVDDHRIKQVITNLVSNAVKFTESG-HIRVDVSYDELS 437

Query: 736 E-----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
           E     ++ +V DTG+G+   +L    +PF Q       +  GTGLGL + + +V    G
Sbjct: 438 EKECGVLMFKVEDTGIGIEQDKLTTIFEPFTQEDEGVSRQFGGTGLGLAICRQLVSMMGG 497

Query: 791 KFYIFSTPAKGTLIEIIF 808
           +    ST   GT  E   
Sbjct: 498 QLIATSTKGVGTCFEFSI 515


>gi|260893731|ref|YP_003239828.1| integral membrane sensor signal transduction histidine kinase
           [Ammonifex degensii KC4]
 gi|260865872|gb|ACX52978.1| integral membrane sensor signal transduction histidine kinase
           [Ammonifex degensii KC4]
          Length = 546

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 88/316 (27%), Positives = 156/316 (49%), Gaps = 14/316 (4%)

Query: 505 TPSVMNHYLTEI--LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
           +  ++   L  +  ++  L +   +     +   +++ L    + L   +      H + 
Sbjct: 238 SRRLVTEPLQRLCAMARRLGEGDWRAVQVVSGSGEVMVLS---QVLEKVAGQLWESHHLL 294

Query: 563 EWKQEKN--KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           E K  +   +L  A +   + +  KS+ LA VSHE+RTPLTA++ ++E++ +   GPL  
Sbjct: 295 EQKVAERTKELQKANEELARANQFKSEILANVSHELRTPLTAVLAYTEMLLDPTTGPLT- 353

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
           P   E    I  S   +L  + DLL ++++E+G+  L +EP  + E V E  SL+   A 
Sbjct: 354 PEQRECLENIADSSKELLLEITDLLQMARLEAGRKELFYEPFDMAEVVQEVFSLLGPLAR 413

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH--TSNEEVI 738
           +KRI +          +LAD   VK I  N++SNAI FT  GG++ +  ++   +   ++
Sbjct: 414 KKRIKLCGPEERGEWWVLADRAKVKHILTNLVSNAIKFTSEGGKVTVKLSYGFDTTRYML 473

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           ++V DTGVG+   E E   + F +         +GTGLGL L + +V  + G+ ++ S P
Sbjct: 474 VKVTDTGVGIDPAEQEVIFEKFYRSKK----HSQGTGLGLTLVRELVQLHGGRVWVESIP 529

Query: 799 AKGTLIEIIFPLYDTS 814
            +G+      PL + S
Sbjct: 530 GQGSSFYFTLPLKEES 545


>gi|212527502|ref|XP_002143908.1| sensor histidine kinase/response regulator, putative [Penicillium
            marneffei ATCC 18224]
 gi|210073306|gb|EEA27393.1| sensor histidine kinase/response regulator, putative [Penicillium
            marneffei ATCC 18224]
          Length = 1768

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 98/606 (16%), Positives = 207/606 (34%), Gaps = 79/606 (13%)

Query: 272  QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI 331
            + +  T +      +    ++   S       +              E++    ++  P+
Sbjct: 838  RRESSTTDQIYDNGRPTPASVTTRSLSRNTSTTSVITHLQREGISISEHIFQLMLNSVPL 897

Query: 332  PFFVY--SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389
              F+   S G + + N  F    + +  D        +     P   ++ + + +     
Sbjct: 898  HLFLAKASSGEVLWTNSKFDAYRRSQPQDQSIRDPWQN---IHPGEVESISKQWLKAL-Q 953

Query: 390  DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449
              +      R+     +        F      +Q  + +   G   +  +  +++ +   
Sbjct: 954  TGSQFTERVRVKRF-GDDNVYRWFIFRANPLLSQTGQVVSWIGSFLDIHEQHVSELRAAQ 1012

Query: 450  EVM------QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            E        +  ++  +    +        ++S N       G   E+ +   FT ++  
Sbjct: 1013 EREVFATNVKYRALANSIPQIVFEATELRGLISANEQWHLYTGQTTEEAMNYGFTTYIHP 1072

Query: 504  NTPSVM---------------------------------------------NHYLTEILS 518
            +                                                     +     
Sbjct: 1073 DDLEKCGVLSSEITRVRTTNDAASASVSHPDVAPLKLFPNGVTPCLLELVNQGIVNSQQD 1132

Query: 519  LDLRQTLEKITLGSTKEEKLLSLRIIIKKLP------FSSCYSLTMHDISEWKQEKNKLS 572
             + R          TK        + + K+         + +  T  DI++ K  + +L+
Sbjct: 1133 ENGRIFYTTELRIRTKGGGYRWHLVRLVKVEASNFGDGEASWYGTCTDINDRKLLERELN 1192

Query: 573  HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
             A +   +E   K+ F + +SHEIRTPL  I+G    I +       +       + I  
Sbjct: 1193 KAMQKLNREMESKTKFFSNMSHEIRTPLNGILGTIPFILDTAL----DNEQRRMMDTIQN 1248

Query: 633  SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
            S   + ++V+++LD+S++E+GKMN+      L   + + I  V   A +K I I      
Sbjct: 1249 SSTNLRELVDNILDVSRVEAGKMNMVKSWFHLRSVLEDVIDTVASRAIDKGIEINYLMDT 1308

Query: 693  NIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV---------ILRVR 742
            ++P  I+ D   ++Q+ +N++ NA+ FT  G +I    +   + EV            V 
Sbjct: 1309 DVPDMIIGDRFRIRQVLINLMGNAVKFTGHG-EIYTRCSVYHDPEVPLKDTELLLNFEVV 1367

Query: 743  DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
            DTG G ++ + E+ M+ F Q+  +   +  G+GLGL L+K +V+ + GK    S   +G 
Sbjct: 1368 DTGKGFSDTDAERLMQRFSQLGGNGSQQNAGSGLGLFLSKQLVEMHGGKLTPSSREGQGA 1427

Query: 803  LIEIIF 808
                  
Sbjct: 1428 KFSFYI 1433


>gi|170767436|ref|ZP_02901889.1| sensory box histidine kinase AtoS [Escherichia albertii TW07627]
 gi|170123770|gb|EDS92701.1| sensory box histidine kinase AtoS [Escherichia albertii TW07627]
          Length = 608

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 83/371 (22%), Positives = 169/371 (45%), Gaps = 28/371 (7%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            + +         I+E  +DG+  I+R+G + + N A   + GY    ++ +P+++    
Sbjct: 254 AQALRETRTLNDLIIENAADGVIAIDRQGDVTTMNPAAEVITGYQRHKLVGQPYSMLF-- 311

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMH 559
              +     + + L                ++ + + L +   ++  +        +   
Sbjct: 312 -DNTQFYSPVLDTLEHGTEHV-ALEISFPGRD-RTIELSVTTSRIHNTHGEMIGALVIFS 368

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           D++  K+ + +++ A+++A        + +A V+HE+R PLTAI G+ ++++ Q    + 
Sbjct: 369 DLTARKETQRRMAQAERLAT-----LGELMAGVAHEVRNPLTAIRGYVQILRQQTRDLM- 422

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
              + EY + + +  + +  ++  LLD S+    +    ++ VSL+  V E + LVQ   
Sbjct: 423 ---HQEYLSVVLKEIDSINKVIQQLLDFSRPRHSQ----WQQVSLNALVEETLVLVQTAG 475

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
            + R+   +   N +  I AD   +KQ+ LNIL NA+    + G+I I T   S+ +  +
Sbjct: 476 VQARVDFISELDNELSPINADRELLKQVLLNILINAVQAISARGKIRIRTWQYSDSQQAI 535

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            + D G G+     +K   PF     S      GTGLGL L++ +++A+ G   + S P 
Sbjct: 536 SIEDNGCGIDLTLQKKIFDPFFTTKAS------GTGLGLALSQRIINAHQGDIRVASLPG 589

Query: 800 KGTLIEIIFPL 810
            G    +I P+
Sbjct: 590 HGATFSLILPI 600



 Score = 39.2 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 13/117 (11%), Positives = 37/117 (31%), Gaps = 6/117 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G +  ++       G    K++G     +    +    + + D L+          
Sbjct: 278 IDRQGDVTTMNPAAEVITGYQRHKLVGQPYSMLF--DNTQFYSPVLDTLEHGTEHVALEI 335

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
            +P     + + +  +   I++ + E  G     I        + +    + ++  +
Sbjct: 336 SFPGRDRTIELSVTTS--RIHNTHGEMIGA--LVIFSDLTARKETQRRMAQAERLAT 388


>gi|27375496|ref|NP_767025.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
            USDA 110]
 gi|27348633|dbj|BAC45650.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
            USDA 110]
          Length = 1198

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 99/653 (15%), Positives = 198/653 (30%), Gaps = 55/653 (8%)

Query: 184  VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVS 241
            V   R     R      +  FS   +       ++     I    +    L      +  
Sbjct: 433  VEERRRTEAVRDQLAVRESLFSAAVQSSDDSIVLQTLDGIIIGWNAAAERLYGYSAEEAI 492

Query: 242  SLTEYYAHKDDVLKTEK--YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
                      D  +  K     +   E     +      + +          ++  S E 
Sbjct: 493  GQPTSILLPPDRREEGKDYLRRIARGERIEHFETVRLRKDGSPVEISVSLSPIRGPSGEI 552

Query: 300  FEYLSHRN----HPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKY 354
                                 +      +  D       +    G++   +PS   +  Y
Sbjct: 553  IGASGSARSLTEARRTERALQQQLEERRQLFDASQDLIMIMDSQGHIAQISPSCEAILGY 612

Query: 355  KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
            +  D I  +G        P   + +  +   L R         A    +  +        
Sbjct: 613  RPDDMIGYSG---ADFIHPAHLEQSREEMRALRR---GGHPKLADTRCLHRDGREIWLSW 666

Query: 415  FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII 474
                   N   +      +  +  + R+ +  +        +I+E   D     +   II
Sbjct: 667  L-----GNWSDQAKRYFFVGRDMTEARLAEESLRESEQLARNIVETALDAFVQTDDRSII 721

Query: 475  LSTNRAVSKLFGYPVEDILRKP-FTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLG 531
            L+ +    +LFG+  ++ L +    + +       +   L   L     QTL   +  + 
Sbjct: 722  LNWSSRAEELFGWRRDEALGRNAIDLIVATGERERVKAGLARFLDSGDGQTLNRRRELVC 781

Query: 532  STKEEKLLSLRIIIKKLPFSSCYS--LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
              ++ K     + +  L         +   D+++    + ++ HA+K+            
Sbjct: 782  CRRDGKEFKAELSVTALKRREGILFNVFYRDLTDKIASEERIRHAEKM-----EAVGQLT 836

Query: 590  ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
              V+H+    LT I G  E++ +        P        ID +     ++   LL  ++
Sbjct: 837  GGVAHDFNNILTVITGTIEILSD---AVAKEPELAAITRMIDEAAGRGAELTQHLLAFAR 893

Query: 650  IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709
                K  L    V ++  + +   L++     ++I I + F       + D   +    L
Sbjct: 894  ----KQPLQPREVDINSLIVDTAKLLRPTL-GEQIQIESVFEEESCVAIVDPNQLTTAIL 948

Query: 710  NILSNAIHFTPSGGQIIISTT-------------HTSNEEVILRVRDTGVGMTNYELEKA 756
            N+  NA    P GG++I+ T                    V++ V DTG G+ +  L + 
Sbjct: 949  NLALNARDAMPGGGKLIVETGAAYLDEVYASVNDVRPGHYVLIAVSDTGTGIPSNMLTRV 1008

Query: 757  MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
              PF          G+GTGLGL +    +  + G   I+S    GT I++  P
Sbjct: 1009 FDPFFTSKGP----GKGTGLGLSMVYGFIKQSAGHIKIYSEEGHGTTIKMYLP 1057



 Score =  132 bits (331), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 39/386 (10%), Positives = 114/386 (29%), Gaps = 11/386 (2%)

Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255
                 +  + +  I               S       +     ++ L      +     
Sbjct: 326 ALLASKEWVAIIVTIPPAVFGRVPAAIQKTSLLVGLLAVLAAASLAVLLARSLTRPIGRL 385

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH-PSLSAY 314
           T     + S   +    +      +           ++  +      +  R    ++   
Sbjct: 386 TAAVEAIGSGRPADIPVDASGETGVLARAFAHMVEEMKAKTSALEHEVEERRRTEAVRDQ 445

Query: 315 FDEGENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
               E+L    V        +    G +   N +   L  Y + + I      +++L  P
Sbjct: 446 LAVRESLFSAAVQSSDDSIVLQTLDGIIIGWNAAAERLYGYSAEEAIGQP---TSILLPP 502

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
              +        + R +R           ++ +    + ++           E +  +G 
Sbjct: 503 DRREEGKDYLRRIARGERIE---HFETVRLRKDGSP-VEISVSLSPIRGPSGEIIGASGS 558

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
                + R  +R ++ ++ +   + +A+ D I I++ +G I   + +   + GY  +D++
Sbjct: 559 ARSLTEARRTERALQQQLEERRQLFDASQDLIMIMDSQGHIAQISPSCEAILGYRPDDMI 618

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553
                 F+           +  +      +  +  T    ++ + + L  +      +  
Sbjct: 619 GYSGADFIHPAHLEQSREEMRALRRGGHPKLAD--TRCLHRDGREIWLSWLGNWSDQAKR 676

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAE 579
           Y     D++E +  +  L  ++++A 
Sbjct: 677 YFFVGRDMTEARLAEESLRESEQLAR 702



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 48/431 (11%), Positives = 119/431 (27%), Gaps = 26/431 (6%)

Query: 182 GIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK---- 237
           G V V       R   +   ++   L   +   S +E       +     P LR      
Sbjct: 169 GAVRVAPDSELERKSERTYFQETIRLAPGEIYVSPIELATRQGGTTALHTPTLRAATPLF 228

Query: 238 -------NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG 290
                    + +  +     D +  T          ++  +            + +    
Sbjct: 229 TPDGKPFGIIIANIDMRPVLDRIRSTTSSGGEIYVVNARGDYLVHPDQTREFGSLRAPPT 288

Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP-----IPFFVYSHGNLFYAN 345
             +++              +  A    G                 +   V     +F   
Sbjct: 289 NWRSDFPFFSALAGSPGVSTQLATDGSGRPSGAAIAPALLASKEWVAIIVTIPPAVFGRV 348

Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405
           P+ +  T         +A     +L A  L+     +      +  +   A      +  
Sbjct: 349 PAAIQKTSLLVGLLAVLAAASLAVLLARSLTRP-IGRLTAAVEAIGSGRPADI---PVDA 404

Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465
           + E  +              +         E   T   + ++ +      + ++++ D I
Sbjct: 405 SGETGVLARAFAHMVEEMKAKTSALEHEVEERRRTEAVRDQLAVRESLFSAAVQSSDDSI 464

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
            +   +GII+  N A  +L+GY  E+ + +P ++ L  +       YL  I      +  
Sbjct: 465 VLQTLDGIIIGWNAAAERLYGYSAEEAIGQPTSILLPPDRREEGKDYLRRIARG--ERIE 522

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKE 581
              T+   K+   + + + +  +   S        +   ++E ++ +  L    +   + 
Sbjct: 523 HFETVRLRKDGSPVEISVSLSPIRGPSGEIIGASGSARSLTEARRTERALQQQLEERRQL 582

Query: 582 SSHKSDFLARV 592
                D +  +
Sbjct: 583 FDASQDLIMIM 593


>gi|238787964|ref|ZP_04631760.1| Phosphate regulon sensor protein phoR [Yersinia frederiksenii ATCC
           33641]
 gi|238723912|gb|EEQ15556.1| Phosphate regulon sensor protein phoR [Yersinia frederiksenii ATCC
           33641]
          Length = 400

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 64/357 (17%), Positives = 130/357 (36%), Gaps = 33/357 (9%)

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
           +  S  E+  D + I   +G I   N    +L G+   +   +     L     S     
Sbjct: 61  RFRSGAESLPDAVVITTIDGNIFWCNGLAQQLLGFRWPEDNGQHILNLLRYPEFSQYL-- 118

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572
                    +Q   +           +  R++           +   D+++ +Q +    
Sbjct: 119 --------QQQEFSRPLTLQLNNGYYVEFRVMPY---SEGQLLMVARDVTQMRQLEG--- 164

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
                       + +F A VSHE+RTPLT + G+ E++ +Q        +       +  
Sbjct: 165 -----------ARRNFFANVSHELRTPLTVLQGYLEMMHDQELAGPLREKA---LGTMQE 210

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
               +  +V  LL +S+IE+       E V +   +      VQ  +N +   I      
Sbjct: 211 QTKRMDGLVKQLLTLSRIEAAPNVDMNEQVDISRMLKMLQHEVQALSNGRH-EITFRINE 269

Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752
            + ++  +   ++    N++ NA++ TP G +I +    T       +V D G G+    
Sbjct: 270 QL-KVFGNEDQLRSAVSNLVYNAVNHTPEGTKIEVCWQQTPQG-AQFQVSDNGPGIGPEH 327

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           + +  + F ++  ++  +  G+GLGL + K  +  +  +  + S    GT      P
Sbjct: 328 VPRLTERFYRVDKARSRQTGGSGLGLAIVKHALSHHDARLDVMSEIGLGTRFIFTLP 384


>gi|296157808|ref|ZP_06840642.1| multi-sensor hybrid histidine kinase [Burkholderia sp. Ch1-1]
 gi|295892054|gb|EFG71838.1| multi-sensor hybrid histidine kinase [Burkholderia sp. Ch1-1]
          Length = 656

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 87/484 (17%), Positives = 174/484 (35%), Gaps = 28/484 (5%)

Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIA------ASARLHTIQWNRE 408
            + + +   G    +LD         +      R++   I        +     I+  R 
Sbjct: 45  AARERLAGGGPDLLVLDYQLSGPETGLDFFRHLRAEGVRIPAILVTGFTDESRVIEALRA 104

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468
               +     +  +  PE + +   +            +        ++ EA    +   
Sbjct: 105 GVSDVVPKSGDYLDYLPEAVERVLSQVRLQRASDEALLLRDREQHYRTLSEALPHLVMTC 164

Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528
           N  G     ++      G          +   +  +   V+     + ++          
Sbjct: 165 NAAGDCDFLSKQWYDYTGLAEGSSYGLAWLDAVHPDDREVIRRSWLKAVA-GNAGDYRHE 223

Query: 529 TLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSH-------AKKI 577
                 +       + +  +  +      +  +  DI   ++   +          A++ 
Sbjct: 224 LRIRRHDGDYRWFDVRVVAMRDAEGNIGKWFGSCTDIHSQREAIEERERLLASEQAARQT 283

Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
           AE+ +  K  FLA +SHE+RTPLT ++  + V++     P    +       I R+  L 
Sbjct: 284 AEEANRAKDRFLAMLSHELRTPLTPVLAGASVLE---MIPHLPDQARASVRMIRRNVELE 340

Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697
             +++DLLD++++ +GK+ L  E V + + +   + L +     K+  +          +
Sbjct: 341 ARLIDDLLDLTRVANGKLRLSLETVDVHDVMDSVLELFRSEIQVKQQDVHVHKNARHHYV 400

Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757
           LAD   ++Q+  N++ NA  FTP GG I + T      +V + V DTG+G+   ++ K  
Sbjct: 401 LADRARLQQMLWNLIRNAAKFTPDGGHIYVRTR-DERMQVQIAVEDTGIGIEPDQIGKLF 459

Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK--GTLIEIIFPLYDTSH 815
             F Q   +   +  G GLGL + KA+ D + G     S P    G    I  P   T+ 
Sbjct: 460 NAFEQGNQNMTRQFGGLGLGLAITKALTDVHGGTVTAQS-PGAHCGATFTITLP---TAM 515

Query: 816 PHDC 819
           P + 
Sbjct: 516 PPEA 519



 Score = 48.5 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/223 (8%), Positives = 54/223 (24%), Gaps = 8/223 (3%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID--PNNHIGDLLKRQNTWYGKT 147
           +A G    +S++     G       G+   D       +    + +  +      +  + 
Sbjct: 165 NAAGDCDFLSKQWYDYTGLAEGSSYGLAWLDAVHPDDREVIRRSWLKAVAGNAGDYRHEL 224

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
            +   +G   Y   D+  + +          + FG         +     +RL       
Sbjct: 225 RIRRHDGD--YRWFDVRVVAMRDAEGNIG--KWFGSCTDIHSQREAIEERERLLASEQAA 280

Query: 208 HEIKKGHSSVEKE--KYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
            +  +  +  +           ++P   +     V  +  +   +           +  E
Sbjct: 281 RQTAEEANRAKDRFLAMLSHELRTPLTPVLAGASVLEMIPHLPDQARASVRMIRRNVELE 340

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
              + +  D   +   +         + +      E       
Sbjct: 341 ARLIDDLLDLTRVANGKLRLSLETVDVHDVMDSVLELFRSEIQ 383


>gi|293405686|ref|ZP_06649678.1| sensory histidine kinase AtoS [Escherichia coli FVEC1412]
 gi|298381368|ref|ZP_06990967.1| signal transduction histidine-protein kinase atoS [Escherichia coli
           FVEC1302]
 gi|291427894|gb|EFF00921.1| sensory histidine kinase AtoS [Escherichia coli FVEC1412]
 gi|298278810|gb|EFI20324.1| signal transduction histidine-protein kinase atoS [Escherichia coli
           FVEC1302]
          Length = 612

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 82/371 (22%), Positives = 170/371 (45%), Gaps = 28/371 (7%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            + +         I+E  +DG+  I+R+G + + N A   + GY   +++ +P+++    
Sbjct: 258 AQALRETRTLNDLIIENAADGVIAIDRQGDVTTMNPAAEVITGYQRHELVGQPYSMLF-- 315

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMH 559
              +     + + L                ++ + + L +   ++  +        +   
Sbjct: 316 -DNTQFYSPVLDTLEHGTEHV-ALEISFPGRD-RTIELSVTTSRIHNTHGEMIGALVIFS 372

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           D++  K+ + +++ A+++A        + +A V+HE+R PLTAI G+ ++++ Q    + 
Sbjct: 373 DLTARKETQRRMAQAERLAT-----LGELMAGVAHEVRNPLTAIRGYVQILRQQTSDLI- 426

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
              + EY + + +  + +  ++  LL+ S+    +    ++ VSL+  V E + LVQ   
Sbjct: 427 ---HQEYLSVVLKEIDSINKVIQQLLEFSRPRHSQ----WQQVSLNALVEETLVLVQTAG 479

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
            + R+   +   N +  I AD   +KQ+ LNIL NA+    + G+I I T   S+ +  +
Sbjct: 480 VQARVDFISELDNELNPINADRELLKQVLLNILINAVQAISARGKIRIQTWQYSDSQQAI 539

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            + D G G+     +K   PF     S      GTGLGL L++ +++A+ G   + S P 
Sbjct: 540 SIEDNGCGIDLSLQKKIFDPFFTTKAS------GTGLGLALSQRIINAHQGDIRVASLPG 593

Query: 800 KGTLIEIIFPL 810
            G    +I P+
Sbjct: 594 YGATFTLILPI 604



 Score = 40.8 bits (94), Expect = 0.98,   Method: Composition-based stats.
 Identities = 12/117 (10%), Positives = 37/117 (31%), Gaps = 6/117 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G +  ++       G    +++G     +    +    + + D L+          
Sbjct: 282 IDRQGDVTTMNPAAEVITGYQRHELVGQPYSMLF--DNTQFYSPVLDTLEHGTEHVALEI 339

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
            +P     + + +  +   I++ + E  G     I        + +    + ++  +
Sbjct: 340 SFPGRDRTIELSVTTS--RIHNTHGEMIGA--LVIFSDLTARKETQRRMAQAERLAT 392


>gi|289614035|emb|CBI59050.1| putative histidine kinase group protein [Sordaria macrospora]
          Length = 970

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 120/637 (18%), Positives = 233/637 (36%), Gaps = 46/637 (7%)

Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD 252
            +A    +    + L  +  G     K+K          P     + + SLT+ +++ DD
Sbjct: 6   AKANTTIVADMANSLLNMVIGGHEDGKDKESHSDINDSAPGPDNSDSLQSLTQEHSNDDD 65

Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
                     ++   +  + ED +    +  T      ++ ++S  +       + P   
Sbjct: 66  SHHILASASASASTPTTQDIEDENDPAWSIATTTTTDSSVDDSSNSNVTVTLQEDVPPTH 125

Query: 313 AYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVD------------D 359
            +            D  PIP  + S    +   +  F         D             
Sbjct: 126 PFAAPD---MSLIFDYSPIPLLLLSSSCCITRVSKRFCQDWHVTEKDCVGKFLLPFLDGQ 182

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
           +   G   +   A  + D  A +     ++     A + R   I   R   L   ++ + 
Sbjct: 183 VRETGASKSKHIAEAVDDAVASRSERTSKAITVKSAFTCRARVIPIFRGAELVSIYLEWH 242

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTN 478
           +         +        D                 +++A  D  I +++ +G I + N
Sbjct: 243 ERPTSDVLDNELVQPGLSTDEA------------FRILVQALKDYAIFLLDTKGHIATWN 290

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
                L GY  ++I+ K F++F  +    +    +   + L   +  E       K+   
Sbjct: 291 TGAQLLKGYTRDEIIGKHFSIFYGKEDLDIKKPEMELDICLREGRV-EDEGWRYKKDGTR 349

Query: 539 LSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
               ++I  +  +     +     D++E K  +++L       E+    KSDFLA +SHE
Sbjct: 350 FWANVVITAVYKNGVHVGFGKVTRDLTERKASESRLI---AAYEESEKLKSDFLANMSHE 406

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           IRTP+  ++    ++ +         R  +  N +D SG ++L ++ND+LD SK+ SG  
Sbjct: 407 IRTPMHGMLSACALLLDSPL----TERQRDIVNIMDESGQILLQVINDILDYSKLASGSF 462

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSN 714
           ++  + V +   ++  +  VQ       +      A N+P+ +  D    +QI  NI+ N
Sbjct: 463 SVSSDVVGVASIITSVVRSVQTTLPPA-VHFELFLALNLPKSVQGDPLRYRQIVQNIVGN 521

Query: 715 AIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           A  FT  G  ++  S     ++   L   V DTG+G+          PF Q   +   R 
Sbjct: 522 AAKFTDKGSIRVRASVHSEDSDSYTLLTEVIDTGIGIREAASASLFTPFSQFDLTTTKRY 581

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAK-GTLIEII 807
           +GTGLGL +AK++ +   G+      P + G++    
Sbjct: 582 KGTGLGLSIAKSLAELMGGRIGYRPNPERHGSIFWFT 618



 Score = 42.7 bits (99), Expect = 0.28,   Method: Composition-based stats.
 Identities = 22/172 (12%), Positives = 48/172 (27%), Gaps = 12/172 (6%)

Query: 51  QSNFTDQ-NQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNY 109
           +   +D  + E V      D    F            + +D  G++   +       G  
Sbjct: 243 ERPTSDVLDNELVQPGLSTD--EAFRILVQALKDYAIFLLDTKGHIATWNTGAQLLKGYT 300

Query: 110 AFKMIGMRLCDVSDILHIDPNNHIGDL--LKRQNTWYGKTTLWPIEGTNLYVPIDLAALP 167
             ++IG           +D      +L    R+     +   +  +GT  +  + + A+ 
Sbjct: 301 RDEIIGKHFSIFYGKEDLDIKKPEMELDICLREGRVEDEGWRYKKDGTRFWANVVITAVY 360

Query: 168 IYSRNREFSGFRGFG-IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVE 218
               +       GFG +           +      ++   L      + S E
Sbjct: 361 KNGVH------VGFGKVTRDLTERKASESRLIAAYEESEKLKSDFLANMSHE 406


>gi|126725013|ref|ZP_01740856.1| sensor histidine kinase/response regulator [Rhodobacterales
           bacterium HTCC2150]
 gi|126706177|gb|EBA05267.1| sensor histidine kinase/response regulator [Rhodobacterales
           bacterium HTCC2150]
          Length = 767

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 152/305 (49%), Gaps = 20/305 (6%)

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH 573
             + +    +  +  TLG    ++  +    +  L FS         ++E  + + +L+ 
Sbjct: 183 ARLEATMKGEIAQHRTLGRFAADEFWTFSASVDALEFS---------LTERDEREAELNA 233

Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
           A   A+  +  KS+FLA +SHEIRTP+  +IG ++++         +     YAN I  S
Sbjct: 234 AMIKADAANKAKSEFLANMSHEIRTPMNGVIGMAQLMLETDL----SDDQNLYANTIQSS 289

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693
           G+ +++I+ND+LD SKI++GKM L   P  L++   +   L+   A  K + +   F+ +
Sbjct: 290 GSALVEIINDILDYSKIDAGKMTLKNAPFDLEQVAQDCSPLMSAQALHKGLEVVLDFSQD 349

Query: 694 IPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILRVRDTGVGMT 749
           +P+  + D   V+QI +NIL NAI FT  G  +  +     + +   + L ++DTG+G+ 
Sbjct: 350 LPKGYIGDSGRVRQILMNILGNAIKFTEKGS-VEFAVNGIQSGDEIALELSIKDTGIGIP 408

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE--II 807
             +L+    PF Q   ++  + +GTGLGL +   MVD   G   + S   KG++    I 
Sbjct: 409 QNKLQSIFVPFEQAEGAKNRQFDGTGLGLAIVNHMVDLMGGSISVESEIGKGSVFILKIA 468

Query: 808 FPLYD 812
            P+  
Sbjct: 469 LPIAQ 473


>gi|119476448|ref|ZP_01616799.1| two-component system sensory histidine kinase [marine gamma
           proteobacterium HTCC2143]
 gi|119450312|gb|EAW31547.1| two-component system sensory histidine kinase [marine gamma
           proteobacterium HTCC2143]
          Length = 458

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 84/253 (33%), Positives = 123/253 (48%), Gaps = 5/253 (1%)

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ-RFGPLGNPR 622
            +Q    +   K+ A+  ++ KSDFLA +SHE+RTPL AIIG+SE++  +     + N  
Sbjct: 203 LRQAMADVKKLKEDADFANNAKSDFLANMSHELRTPLNAIIGYSEMMLEEIDPDDVNNEG 262

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                  I  +G  +L+ +ND+LD SKIESG M L+ E    +  +SE I+ +   A ++
Sbjct: 263 QQSDLKNILIAGKHLLNQINDVLDFSKIESGNMTLYAELFDSNAILSEVIATMTPLAGQR 322

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VIL 739
              +  S    IP +  D    + I  N+LSNA  F+     I IS     +      I 
Sbjct: 323 DNTLIYSGDQKIPLLKNDATKFRHIFTNLLSNACKFSEQNA-IQISARLGPSGHSTMAIF 381

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V D+G+GMT  +L    + F Q  +S   +  GTGLGL L K   D   GK  + S   
Sbjct: 382 TVSDSGIGMTEKQLSIIFEAFKQADSSTTRQYGGTGLGLTLCKQYCDLMGGKIQVNSEVG 441

Query: 800 KGTLIEIIFPLYD 812
            GT   +  PL  
Sbjct: 442 GGTTFTVHMPLSH 454


>gi|172065677|ref|YP_001816389.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ambifaria
           MC40-6]
 gi|171997919|gb|ACB68836.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ambifaria
           MC40-6]
          Length = 528

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 74/371 (19%), Positives = 148/371 (39%), Gaps = 19/371 (5%)

Query: 448 EIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
                +  +++ A +D  + +++ +G + + N    ++ GY   +I+   F+ F   +  
Sbjct: 25  RFAEFRFETVVGAITDYAVFMLDPQGNVATWNAGAERIKGYRTTEIIGHHFSRFYPPDAI 84

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDIS 562
           +     L  +    +    E       K+  L    + I  +               D++
Sbjct: 85  AAGRPAL-GLREASVHGRFEDEGWRVRKDGSLFWASVTITAVRDHGGQLAGFIKITRDMT 143

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E K+            E  +   S F+A ++HE+R  L  +     V++     P   P 
Sbjct: 144 ERKRL--------AELEMSTHRLSVFIAMLAHELRNHLAPLRHSVSVLQT---LPDPAPM 192

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             +  + + R    +  +V+DLLD+ +I +GK+ L   PV++ + V   +  +Q     +
Sbjct: 193 LAQCRDAVHRQVGQLTRLVDDLLDVGRITAGKVELDNAPVTVRDVVCRGVESIQPKLAAR 252

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           +  +R         +  D   + Q+  N+L NA  F+P G +I ++        V +RV 
Sbjct: 253 QQHLRVELPPEPVVVRGDAARLVQVLHNLLDNASKFSPPGARIDVAAA-REGATVAIRVT 311

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKG 801
           D GVG+    LE     F Q     +   +G GLGL + ++ ++ + G+    S  P  G
Sbjct: 312 DHGVGIAAGSLETIFDLFDQDGVPGRRPSDGFGLGLAICRSFIELHGGRISAESEGPGHG 371

Query: 802 TLIEIIFPLYD 812
               +  P+  
Sbjct: 372 ATFTVRLPVEH 382



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 49/522 (9%), Positives = 122/522 (23%), Gaps = 40/522 (7%)

Query: 53  NFTDQNQESVSNTNYLDSEN------TFVFDP--IPRTVRFTWNIDAHGYLKEISEELPK 104
           N  D   E        D+ +       F F+      T    + +D  G +   +    +
Sbjct: 2   NKDDAISELPPPLGPADARDLLHRFAEFRFETVVGAITDYAVFMLDPQGNVATWNAGAER 61

Query: 105 TIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLA 164
             G    ++IG           I        L +       +   W +          + 
Sbjct: 62  IKGYRTTEIIGHHFSRFYPPDAIAAGRPALGLREASVHGRFEDEGWRVRKDGSLFWASVT 121

Query: 165 ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG----KRLDKKFSHLHEIKKGHSSVEKE 220
              +     + +GF    I            L     +         HE++   + +   
Sbjct: 122 ITAVRDHGGQLAGF--IKITRDMTERKRLAELEMSTHRLSVFIAMLAHELRNHLAPLRHS 179

Query: 221 KYDIFSQQSPPPHL------------RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
              + +   P P L            ++   V  L +        ++ +  P+   +   
Sbjct: 180 VSVLQTLPDPAPMLAQCRDAVHRQVGQLTRLVDDLLDVGRITAGKVELDNAPVTVRDVVC 239

Query: 269 LPEQEDFHTINLNQYTKKQYFGT----LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
              +     +   Q   +         ++ ++    + L +    +              
Sbjct: 240 RGVESIQPKLAARQQHLRVELPPEPVVVRGDAARLVQVLHNLLDNASKFSPPGARIDVAA 299

Query: 325 TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL-LDAPKLSDNNAIKP 383
             +   +   V  HG +  A  S   +      D +          L          +  
Sbjct: 300 AREGATVAIRVTDHG-VGIAAGSLETIFDLFDQDGVPGRRPSDGFGLGLAICRSFIELHG 358

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
             +          +     +        A T  P  +A +         +  ++ D+   
Sbjct: 359 GRISAESEGPGHGATFTVRLPVEHHVETARTEAPAPRAGKPTAAPLNIVVVDDNRDSADT 418

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
              +      +  +    SD +A+      +         L    + D+        L  
Sbjct: 419 LAVLLQLKGHVPRVAYNASDALAL------VREAVPH-LMLIDLSMPDVDGYTLLHELRA 471

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
                   ++  +        L +       +  +  L + +
Sbjct: 472 IDTPGGMIFVA-LSGHASSSDLARTAREGFDDHLVKPLEMAV 512


>gi|123443384|ref|YP_001007358.1| phosphate regulon sensor protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122090345|emb|CAL13213.1| phosphate regulon sensor protein PhoR [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 438

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 66/358 (18%), Positives = 134/358 (37%), Gaps = 35/358 (9%)

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
           +  S  E+  D + +   +G I   N    +L G+   +   +     L     S     
Sbjct: 99  RFRSGAESLPDAVVMTTIDGNIFWCNGLAQQLLGFRWPEDNGQHILNLLRYPEFSQYL-- 156

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572
                    +Q   +           +  R++           +   D+++ +Q +    
Sbjct: 157 --------QQQEFSRPLTLQLNNGYYVEFRVMPY---SEGQLLMVARDVTQMRQLEG--- 202

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF-GPLGNPRYIEYANYID 631
                       + +F A VSHE+RTPLT + G+ E++ +Q   GPL +    +    + 
Sbjct: 203 -----------ARRNFFANVSHELRTPLTVLQGYLEMMHDQELVGPLRD----KALGTMQ 247

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
                +  +V  LL +S+IE+       E V +   +      VQ  +N +   I     
Sbjct: 248 EQTKRMDGLVKQLLTLSRIEAAPNVDMNEQVDIPRMLKMLQHEVQALSNGRH-EITFRIN 306

Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751
             + ++  +   ++    N++ NA++ TP G +I +    T       +V D G G+   
Sbjct: 307 EQL-KVFGNEDQLRSAVSNLVYNAVNHTPDGTKIEVCWQQTPQG-AQFQVSDNGPGIGPE 364

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            + +  + F ++  ++  +  G+GLGL + K  +  +  +  + S    GT      P
Sbjct: 365 HVPRLTERFYRVDKARSRQTGGSGLGLAIVKHALSHHDARLDVMSEIGLGTRFIFTLP 422


>gi|89054779|ref|YP_510230.1| histidine kinase [Jannaschia sp. CCS1]
 gi|88864328|gb|ABD55205.1| histidine kinase [Jannaschia sp. CCS1]
          Length = 346

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 72/361 (19%), Positives = 145/361 (40%), Gaps = 29/361 (8%)

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           S+++A  D + +I  +G I   N   + LFG     I+ +   + L       +   +  
Sbjct: 8   SLIDAVPDPMVLIAPDGTIGHANAGATALFG---GWIIGRSHGLALRH---PALLEQIDA 61

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575
           + S +    L               +RI       +    L   DI+  ++ +       
Sbjct: 62  VRSGEASAKLRIE-RSEQAGVTQYKVRISALTGGAAGALVLHFTDITHLRETEE------ 114

Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
                    + DF+A VSHE+RTPLT+++GF E ++              +   ++    
Sbjct: 115 --------MRRDFVANVSHELRTPLTSVMGFIETLRG--PARNDPAAQDRFLGIMEAEAG 164

Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695
            +  +++DLL +SK+E+ +     E V L   + E I+ ++  A++    +     +   
Sbjct: 165 RMNRLISDLLSLSKVEAAERKRPTEQVDLAVLLEEVIAALRPRADDAGNRLELIHDDAPA 224

Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE------EVILRVRDTGVGMT 749
            +  D   + Q+ LN+  NA+ +   G  + +  +            + + V D G G+ 
Sbjct: 225 LVRGDHDQLMQVFLNLAENALKYGGPGQPVTLRLSRGQGGGINGRAMIRVDVTDQGPGID 284

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +  L +  + F ++   +     GTGLGL + K +V+ + G+  I S    G+   +  P
Sbjct: 285 SQHLPRLTERFYRVDAHRSREMGGTGLGLAIVKHIVNRHRGRLKITSQQGHGSTFSVQLP 344

Query: 810 L 810
           +
Sbjct: 345 V 345


>gi|329890390|ref|ZP_08268733.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family
           protein [Brevundimonas diminuta ATCC 11568]
 gi|328845691|gb|EGF95255.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family
           protein [Brevundimonas diminuta ATCC 11568]
          Length = 776

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 84/376 (22%), Positives = 154/376 (40%), Gaps = 22/376 (5%)

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLF---------GYPVEDILRKPFTVFLEQ 503
           QL   + A  DG+++ + +  ++  N+  S++          G    ++L       +  
Sbjct: 254 QLLEAVHAMPDGVSVYDADDRLILWNQRYSEIAPHLQGVLRPGVTFREVLEAGIRSGVYP 313

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
           +     + ++ E L+     T  +    +    + L ++                 DIS+
Sbjct: 314 DIVGREDAWIEERLACRRIATAPREIKVAD---RWLRVQDRPTV---GGGAVTVCSDISD 367

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            K++   L+ A+  A   +  KS FLA +SHEIRTPL  +IG ++ +   +     +   
Sbjct: 368 LKRDAAALAEARDAANAANRAKSRFLANMSHEIRTPLNGVIGVAQALTRTKL----SQHQ 423

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            E    I  S   +  +++D+LD++++ESG++ L  EP+ L   V EA  L    A +K 
Sbjct: 424 QEMLELIQSSSRTLQTLLSDILDLARVESGRLELKEEPLDLARTVEEAALLYAAAARDKG 483

Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTT-HTSNEEVILR 740
           +      A      I  D   +KQ+  N++SNA+ FT SG   + +      + + +   
Sbjct: 484 LQFIVEVAPEAQRWIYGDAVRLKQVLTNLVSNAVKFTASGFVSLTVDAVPAEAPQTLRFV 543

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           ++DTG+G       +    F Q          G+GLGL + + +     G     S P  
Sbjct: 544 IQDTGIGFDAQTQARLFNRFEQADGDITRHYGGSGLGLAICRELAAMMGGDLGCESEPGA 603

Query: 801 GTLIEIIFPLYDTSHP 816
           G    +  P      P
Sbjct: 604 GAAFILSLPFKPAQAP 619


>gi|71906060|ref|YP_283647.1| PAS [Dechloromonas aromatica RCB]
 gi|71845681|gb|AAZ45177.1| PAS protein [Dechloromonas aromatica RCB]
          Length = 787

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 86/393 (21%), Positives = 156/393 (39%), Gaps = 40/393 (10%)

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
              L  + +   D I   + EG  L  N+A++       +       T           +
Sbjct: 241 AAMLRLMCDNVPDMIWAKDLEGRYLFANQAMASCLLCASDTGEPVGKTDLFFAERERAAH 300

Query: 511 HYLTEILSLDLRQTLEKITLGSTK-----------EEKLLSLRIIIKKLPFSSCYS---- 555
              ++  +   +     +                   + L +          S       
Sbjct: 301 PEDSQWFTFGEQCLATDLETLRRGVPSAFEEMGNVRGRYLCIDAFKAPFVDGSGQVIGTV 360

Query: 556 LTMHDISEWKQEKNKLSHAKK------------------IAEKESSHKSDFLARVSHEIR 597
            +  DI+E KQ + +L+  ++                  +AE  +  KS FLA +SHEIR
Sbjct: 361 GSARDITERKQVERELAKYRENLEGVVRERTRELTVAKDLAETANRAKSAFLANMSHEIR 420

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TPL AI G + +++        + +  E  + ID +G  +L+I++D+L +S+IE+G+M L
Sbjct: 421 TPLNAITGMAYLMRRDGV----SEKQGERLDRIDAAGQHLLEIIHDVLSLSQIEAGRMTL 476

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
             +P+ L    + A+ ++   A  K + +R  F      +  D   ++Q  LN L NA+ 
Sbjct: 477 EAKPLDLSVVCTGALEVLADEARRKGLSLRQEFGELPVGLHGDAVRLRQSLLNYLGNAVK 536

Query: 718 FTPSGGQIII--STTHTSNEE-VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           FT +G  ++     +   +   +   V D+G GM+     +  +PF Q+ +S      GT
Sbjct: 537 FTEAGSVVLRCHELSRNDSGHLIRFEVVDSGPGMSPESRTQLFQPFHQVDSSSTRVHGGT 596

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           GLGL + + +     G     STP  G+     
Sbjct: 597 GLGLVITRRLAQLMGGDAGCDSTPGVGSRFWFT 629



 Score = 45.0 bits (105), Expect = 0.057,   Method: Composition-based stats.
 Identities = 24/268 (8%), Positives = 64/268 (23%), Gaps = 26/268 (9%)

Query: 86  TWNIDAHGYLKEISEELPK--TIGNYAFKMIGMR---LCD---VSDILHID----PNNHI 133
            W  D  G     ++ +       +   + +G       +    +              +
Sbjct: 255 IWAKDLEGRYLFANQAMASCLLCASDTGEPVGKTDLFFAERERAAHPEDSQWFTFGEQCL 314

Query: 134 GDLLKRQNTWYGKTTLWPIEG--TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN 191
              L+      G  + +   G     Y+ ID    P    + +  G    G         
Sbjct: 315 ATDLETLR--RGVPSAFEEMGNVRGRYLCIDAFKAPFVDGSGQVIGT--VGSARDITERK 370

Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL------RMKNKVSSLTE 245
                  +  +    +   +    +V K+  +  ++             R      +   
Sbjct: 371 QVERELAKYRENLEGVVRERTRELTVAKDLAETANRAKSAFLANMSHEIRTPLNAITGMA 430

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
           Y   +D V + +   L   + +     E  H  ++   ++ +               +  
Sbjct: 431 YLMRRDGVSEKQGERLDRIDAAGQHLLEIIH--DVLSLSQIEAGRMTLEAKPLDLSVVCT 488

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPF 333
                L+           +   + P+  
Sbjct: 489 GALEVLADEARRKGLSLRQEFGELPVGL 516


>gi|87119494|ref|ZP_01075391.1| two-component system sensory histidine kinase [Marinomonas sp.
           MED121]
 gi|86164970|gb|EAQ66238.1| two-component system sensory histidine kinase [Marinomonas sp.
           MED121]
          Length = 910

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 86/266 (32%), Positives = 149/266 (56%), Gaps = 14/266 (5%)

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            D +E ++++ +  +A+  A K +  KS+FLA++SHE+RTPL AIIG +E++        
Sbjct: 395 RDDAELERKEAE--NARAEAVKANEVKSEFLAKMSHELRTPLNAIIGLTEMMHEDAI-EF 451

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
            +  Y+E  + + R+G  +L+++ND+LDISKIE+GKM LH E  +L  A+ + I+ ++  
Sbjct: 452 DDEDYVEPLDRVLRAGKHLLNLINDILDISKIEAGKMELHRENFNLIMALEDVIASIKPL 511

Query: 679 ANEKRILIRTSFANNIPRILA----DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
           +++K I +   F      +L     D   +KQI LN++SNA+ FT  G  + +S   T N
Sbjct: 512 SDKKSIKLEGDFE-----VLGDHFNDQTRLKQILLNLMSNAVKFTDEG-VVTLS-ARTEN 564

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
           + + + V D+G+GM   +     + F Q+ +S   + +GTGLGL +++       G  ++
Sbjct: 565 DRLNIAVTDSGIGMNEEQCAGLFQDFVQVDSSSVRKHQGTGLGLAISRKFSRMMGGDIFV 624

Query: 795 FSTPAKGTLIEIIFPLYDTSHPHDCI 820
            S   KG+   +  PL     P D +
Sbjct: 625 TSEVGKGSTFTLSIPLNQEDVPADLV 650


>gi|311280717|ref|YP_003942948.1| PAS/PAC sensor signal transduction histidine kinase [Enterobacter
           cloacae SCF1]
 gi|308749912|gb|ADO49664.1| PAS/PAC sensor signal transduction histidine kinase [Enterobacter
           cloacae SCF1]
          Length = 431

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 71/427 (16%), Positives = 155/427 (36%), Gaps = 37/427 (8%)

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             +L       I     L  + W     L +         +        G+    +  + 
Sbjct: 33  WFLLAAVTGLLIWHFWNLLRLSW----WLWVDRSMTPPPGRGSWEPLLYGLHQMQMRNKK 88

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            +R++   + +  S  E+  D + +   EG I   N    ++      D   +     L 
Sbjct: 89  RRRELGSLIKRFRSGAESLPDAVVLTTEEGAIFWCNGLAQQMLHLRWPDDNGQNILNLLR 148

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
               S               +   K         + L +R++           +   D++
Sbjct: 149 YPEFSRYL----------KARDFTKPMNLVLNSGRHLEIRVMPY---SEKQLLMVARDVT 195

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  Q +                + +F A VSHE+RTPLT + G+ E+++ Q        +
Sbjct: 196 QMHQLEG--------------ARRNFFANVSHELRTPLTVLQGYLEMMQEQILEGAPREK 241

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                + +      +  +V  LL +SKIE+  +    + + +   +       Q  +++K
Sbjct: 242 A---LHTMREQTQRMEGLVRQLLTLSKIEAAPLMALNDKIDVPMMLRVVEREAQTLSHKK 298

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
            + +     +++ ++L +   ++    N++ NA++ TP G +I +    T +  +   V 
Sbjct: 299 HV-LTFEIDDSL-QVLGNEEQLRSAMSNLVYNAVNHTPEGTEIRVCWQRTPHGAL-FSVE 355

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G G+    + +  + F ++  ++  +  G+GLGL + K  V+ +  +  I S P   T
Sbjct: 356 DNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHAVNHHDSRLDIESQPGVRT 415

Query: 803 LIEIIFP 809
               + P
Sbjct: 416 RFSFLLP 422


>gi|229508236|ref|ZP_04397741.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae BX 330286]
 gi|229511525|ref|ZP_04401004.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae B33]
 gi|229518664|ref|ZP_04408107.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae RC9]
 gi|229607810|ref|YP_002878458.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae MJ-1236]
 gi|254848772|ref|ZP_05238122.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae MO10]
 gi|255744919|ref|ZP_05418869.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholera CIRS 101]
 gi|229343353|gb|EEO08328.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae RC9]
 gi|229351490|gb|EEO16431.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae B33]
 gi|229355741|gb|EEO20662.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae BX 330286]
 gi|229370465|gb|ACQ60888.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae MJ-1236]
 gi|254844477|gb|EET22891.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae MO10]
 gi|255737390|gb|EET92785.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholera CIRS 101]
          Length = 1176

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 90/382 (23%), Positives = 160/382 (41%), Gaps = 24/382 (6%)

Query: 441 RINKRKMEIEVMQLC---SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP- 496
           R +++  ++   QL     +L+A    I I + +G ++ TN A  K++    E    +P 
Sbjct: 511 RSSEQVAKLSTEQLRWLTELLDAIPSMIFISDAKGEVVLTNAAYRKIYHTCCEKGCVQPQ 570

Query: 497 --FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554
              +     +        + +    +         +             I   +     Y
Sbjct: 571 PECSFLALPDQHEAEFSIIIQAPKSNCSIGEHYFHVTRRA---------ISHPINQRKYY 621

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
               +DI+E K+ +  L  + + A +    ++ FLA VSHE+RTP+ A++G  E++ ++ 
Sbjct: 622 LTLFNDITELKETEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGLMEILASR- 680

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
              L +            S   +   VND+LD SKIE+ ++ L     +L + +   +  
Sbjct: 681 ---LKSSESQLLLTNAISSAERLKLHVNDILDFSKIEAQQLQLDIGLYNLADELGPLLRG 737

Query: 675 VQLYANEKRILIRTSFANN-IPRILADLRSVKQIALNILSNAIHFTPSGGQI-IISTTHT 732
            +  A  K I     ++ N +     D     QI  N+LSNAI FT  G  +  I     
Sbjct: 738 FEASAQLKEIEFDVIWSPNSLLLANFDALRFNQIVTNLLSNAIKFTDQGRVVFKIDVAPE 797

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
               + + V DTG GMT  ++E    PF Q  ++   R  GTGLG+ +   +++   GK 
Sbjct: 798 ---MLTIVVEDTGCGMTQTQIESLFVPFAQADSTITRRFGGTGLGMSIVANLIELMNGKI 854

Query: 793 YIFSTPAKGTLIEIIFPLYDTS 814
            + S   +GT I++  PL   +
Sbjct: 855 EVKSEFEQGTQIQVNLPLVTQT 876


>gi|15641658|ref|NP_231290.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae O1 biovar El Tor str. N16961]
 gi|153823157|ref|ZP_01975824.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae B33]
 gi|227081805|ref|YP_002810356.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae M66-2]
 gi|298498265|ref|ZP_07008072.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae MAK 757]
 gi|9656167|gb|AAF94804.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae O1 biovar El Tor str. N16961]
 gi|126519318|gb|EAZ76541.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae B33]
 gi|227009693|gb|ACP05905.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae M66-2]
 gi|297542598|gb|EFH78648.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae MAK 757]
          Length = 1146

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 90/382 (23%), Positives = 160/382 (41%), Gaps = 24/382 (6%)

Query: 441 RINKRKMEIEVMQLC---SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP- 496
           R +++  ++   QL     +L+A    I I + +G ++ TN A  K++    E    +P 
Sbjct: 481 RSSEQVAKLSTEQLRWLTELLDAIPSMIFISDAKGEVVLTNAAYRKIYHTCCEKGCVQPQ 540

Query: 497 --FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554
              +     +        + +    +         +             I   +     Y
Sbjct: 541 PECSFLALPDQHEAEFSIIIQAPKSNCSIGEHYFHVTRRA---------ISHPINQRKYY 591

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
               +DI+E K+ +  L  + + A +    ++ FLA VSHE+RTP+ A++G  E++ ++ 
Sbjct: 592 LTLFNDITELKETEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGLMEILASR- 650

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
              L +            S   +   VND+LD SKIE+ ++ L     +L + +   +  
Sbjct: 651 ---LKSSESQLLLTNAISSAERLKLHVNDILDFSKIEAQQLQLDIGLYNLADELGPLLRG 707

Query: 675 VQLYANEKRILIRTSFANN-IPRILADLRSVKQIALNILSNAIHFTPSGGQI-IISTTHT 732
            +  A  K I     ++ N +     D     QI  N+LSNAI FT  G  +  I     
Sbjct: 708 FEASAQLKEIEFDVIWSPNSLLLANFDALRFNQIVTNLLSNAIKFTDQGRVVFKIDVAPE 767

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
               + + V DTG GMT  ++E    PF Q  ++   R  GTGLG+ +   +++   GK 
Sbjct: 768 ---MLTIVVEDTGCGMTQTQIESLFVPFAQADSTITRRFGGTGLGMSIVANLIELMNGKI 824

Query: 793 YIFSTPAKGTLIEIIFPLYDTS 814
            + S   +GT I++  PL   +
Sbjct: 825 EVKSEFEQGTQIQVNLPLVTQT 846


>gi|323977583|gb|EGB72669.1| hsp90-like protein [Escherichia coli TW10509]
          Length = 605

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 97/467 (20%), Positives = 200/467 (42%), Gaps = 30/467 (6%)

Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
            +   +   +I      + L +  +         +++  +    I+    +   +    N
Sbjct: 155 SMIPIERNGEILGYIWANELTEDIRRQAWKMDVRIIIVLTAGLLISLLLIVLFSRRLSAN 214

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN--KRKMEIEVMQLCSILEATSDGIAI 467
              +T      A   P  +PQ   E   +   +N   + +         I+E  +DG+  
Sbjct: 215 IDIITDGLATLAQNIPTRLPQLPGEMGQISQSVNNLAQALRETRTLNDLIIENAADGVIA 274

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
           I+R+G + + N A   + GY   +++ +P+++    +     +  L  +        LE 
Sbjct: 275 IDRQGDVTTMNPAAEVITGYQRHELVGQPYSMLF--DNTPFYSPVLDTLEHGTEHVALEI 332

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
              G     + + L +   ++  +        +   D++  K+ + +++ A+++A     
Sbjct: 333 SFPGRE---RTIELSVTTSRIHNTHGEMIGALVIFSDLTARKETQRRMAQAERLAT---- 385

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
              + +A V+HE+R PLTAI G+ ++++ Q   P+    + EY + + +  + +  ++  
Sbjct: 386 -LGELMAGVAHEVRNPLTAIRGYVQILRQQTSDPI----HQEYLSVVLKEIDSINKVIQQ 440

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703
           LL+ S+    +    ++ VSL+  V E + LVQ    + R+   +   N +  I AD   
Sbjct: 441 LLEFSRPRHSQ----WQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSPISADREL 496

Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
           +KQ+ LNIL NA+    + G+I I T   S+ +  + + D G G+     +K   PF   
Sbjct: 497 LKQVLLNILINAVQAISARGKIRIRTWQYSDSQQAISIEDNGSGIDLSLQKKIFDPFFTT 556

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             S      GTGLGL L++ +++A+ G   + S P  G    +I P+
Sbjct: 557 KAS------GTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILPI 597



 Score = 40.4 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 21/273 (7%), Positives = 67/273 (24%), Gaps = 19/273 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147
           ID  G +  ++       G    +++G     +       P  + + D L+         
Sbjct: 275 IDRQGDVTTMNPAAEVITGYQRHELVGQPYSML---FDNTPFYSPVLDTLEHGTEHVALE 331

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
             +P     + + +  +   I++ + E  G     I        + +    + ++  +  
Sbjct: 332 ISFPGRERTIELSVTTS--RIHNTHGEMIGA--LVIFSDLTARKETQRRMAQAERLATL- 386

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
                     E         ++P   +R   ++           + L      + +  + 
Sbjct: 387 ---------GELMAGVAHEVRNPLTAIRGYVQILRQQTSDPIHQEYLSVVLKEIDSINKV 437

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE-NLTPETV 326
                E     +             +         +  R         +    +   E +
Sbjct: 438 IQQLLEFSRPRHSQWQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSPISADRELL 497

Query: 327 DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDD 359
            +  +   + +   +       +   +Y     
Sbjct: 498 KQVLLNILINAVQAISARGKIRIRTWQYSDSQQ 530


>gi|218779349|ref|YP_002430667.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218760733|gb|ACL03199.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 868

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 79/513 (15%), Positives = 175/513 (34%), Gaps = 41/513 (7%)

Query: 321 LTPETVDKCPIPFFVYSHGNLFY-ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
                V   P    +     +   AN   + +   +  + +     +S  L   ++ +  
Sbjct: 235 AAESIVSNMPSGLMLLDQDGVLAIANEQAMDMLGMRQGEMVGR--HISQFLHEDQMVEGL 292

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
               V              R   ++    +SL ++       +   +      +  +   
Sbjct: 293 RNDIV-------HGSNFRNREINLRTRGGDSLPVSMSRSVIKDDNGDVTGIVCLATDLTY 345

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
            +  +  +     +   ++E  ++ +  ++ +G +   N  +  L GY  E++L + F  
Sbjct: 346 AKEKEMLLRESEEKYRDLVENINEVVYSLDEKGSLTYINPRIRTLMGYHPEELLGRDFNR 405

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTM 558
            +       +     ++L+     + E   L  T E + +       +          T+
Sbjct: 406 LVHPADLEEVAKRFRDVLA-GYAWSHEFRVLDKTGEVRWVYSSNRPARKNDVIMGVQGTL 464

Query: 559 HDISEWKQEKNKLSHAKKIAEKES--SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            D++  ++ + +    +    +             ++H     L  I+G++E+       
Sbjct: 465 MDVTGRRKSEEEKLRLETDLRRSQKMEAVGTLAGGIAHNFNNILYPIMGYAEMALEDV-- 522

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
              +    E    I  + +   ++V  +L  S +   K +LH +       + + I+ ++
Sbjct: 523 -PEDSPVREELEGILTATHRAKELVKQILAFSHV--AKESLHPQ--DPRPIMDDVITFIK 577

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT-PSGGQIIISTTH---- 731
                  I I T   +N   ++ D   + Q+ LN+ +NA       GG + +        
Sbjct: 578 GVLPS-TIRIETHLEDNAGFVIGDRAQLHQMVLNLCTNAYQAMASRGGVLELRLERFQPS 636

Query: 732 ----------TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
                      S   +   V DTG GM    +++   P+          GEGTG+GL + 
Sbjct: 637 PREVIPGLPPGSGPYMRFSVIDTGEGMPQEVMDRIFDPYFTTKP----VGEGTGMGLAVT 692

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
            AMV+ + G   +FS P KG   +I+ P    S
Sbjct: 693 HAMVEKHGGVIQVFSQPGKGARFDILLPAAPAS 725



 Score = 77.8 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 42/484 (8%), Positives = 120/484 (24%), Gaps = 37/484 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            +++D  G L  I+  +   +G +  +++G     +     ++        +     W  
Sbjct: 371 VYSLDEKGSLTYINPRIRTLMGYHPEELLGRDFNRLVHPADLEEVAKRFRDVLAGYAWSH 430

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +  +    G      +  +  P    +    G +G   +              RL+    
Sbjct: 431 EFRVLDKTGE--VRWVYSSNRPARKND-VIMGVQG--TLMDVTGRRKSEEEKLRLETDLR 485

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
              +++                    P +             +   + L+        ++
Sbjct: 486 RSQKMEA--VGTLAGGIAHNFNNILYPIMGYAEMALEDVPEDSPVREELEGILTATHRAK 543

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
           E         H    + +   Q    + ++     + +      ++       +N     
Sbjct: 544 ELVKQILAFSHVAKESLHP--QDPRPIMDDVITFIKGVLPS---TIRIETHLEDNAGFVI 598

Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIE-IAGGLSTLLDAPKLSDNNAIKPV 384
            D+  +   V     L     ++  +     V ++       S     P L   +     
Sbjct: 599 GDRAQLHQMV-----LNLCTNAYQAMASRGGVLELRLERFQPSPREVIPGLPPGSGPYMR 653

Query: 385 MLYRSDRTCIAASA-------RLHTIQWNRENSLAMTFIPFEKANQFPENMPQN----GI 433
                    +              T        + +                 +    G 
Sbjct: 654 FSVIDTGEGMPQEVMDRIFDPYFTTKPVGEGTGMGLAVTHAMVEKHGGVIQVFSQPGKGA 713

Query: 434 EPEDV----DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
             + +         + K      +   +L    + I +++ E  +    R   +  GY V
Sbjct: 714 RFDILLPAAPASRQEVKAPESHEK---VLGN-GERILLVDDESAVRKVTRRALERLGYDV 769

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
            +         + Q  P+ ++  LT++    L   +    +   +++  + L     +  
Sbjct: 770 MEAPDGLTAWGVFQQDPNGVDLILTDLTMPGLTGEVLAQRIRKERQDMPIILISGYSESD 829

Query: 550 FSSC 553
               
Sbjct: 830 GDGG 833



 Score = 68.5 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/303 (10%), Positives = 80/303 (26%), Gaps = 13/303 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D  G L   +E+    +G    +M+G  +                D++   N +  +  
Sbjct: 250 LDQDGVLAIANEQAMDMLGMRQGEMVGRHISQFLH-EDQMVEGLRNDIVHGSN-FRNREI 307

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                G +  +P+ ++   I   N + +G     +        +   L +  ++K+  L 
Sbjct: 308 NLRTRGGDS-LPVSMSRSVIKDDNGDVTGI--VCLATDLTYAKEKEMLLRESEEKYRDLV 364

Query: 209 EIKKGHSSVEKEKYDIFSQQS---PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
           E          EK  +               +  +        H  D+ +  K       
Sbjct: 365 ENINEVVYSLDEKGSLTYINPRIRTLMGYHPEELLGRDFNRLVHPADLEEVAKRFRDVLA 424

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
             +   +                    + N              +     +E +      
Sbjct: 425 GYAWSHEFRVLDKTGEVRWVYSSNRPARKN-DVIMGVQGTLMDVTGRRKSEEEKLRLETD 483

Query: 326 VDKCP--IPFFVYSHGNLFYANPSFLLLTKYK--SVDDIEIAGGLSTLLDAPKLSDNNAI 381
           + +          + G     N     +  Y   +++D+     +   L+    + + A 
Sbjct: 484 LRRSQKMEAVGTLAGGIAHNFNNILYPIMGYAEMALEDVPEDSPVREELEGILTATHRAK 543

Query: 382 KPV 384
           + V
Sbjct: 544 ELV 546


>gi|60682677|ref|YP_212821.1| putative two-component system, sensor kinase [Bacteroides fragilis
           NCTC 9343]
 gi|60494111|emb|CAH08903.1| putative two-component system, sensor kinase [Bacteroides fragilis
           NCTC 9343]
          Length = 543

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 97/521 (18%), Positives = 188/521 (36%), Gaps = 42/521 (8%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFF---VYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365
              ++  D+      + +D  P P     +       Y N    L +     D +     
Sbjct: 39  RKSASADDDYRRFLFDILDNLPFPIMVKDIQEQFKYTYWNKESELQSGISRKDAVG--FS 96

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
              +    +      I   ++       I   A    +  + +    +       + +  
Sbjct: 97  DVDIFGEERGKQYRKIDEDLVRAG----IPYKAEERYVTADGKVHDTLVMKSIISSGKLG 152

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLC-------SILEATSDGIAIINREGIILSTN 478
           + +       E    ++ +R++     QL          L +   G+  I+R  ++    
Sbjct: 153 KWL--LVARWEITQLKMYERELLAAKEQLEGAVCKQKLALRSIDFGLIYIDRNYLVQW-- 208

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNT------PSVMNHYLTEILSLDLRQTLEKITLGS 532
               +  G     +  + +T                      E +               
Sbjct: 209 ----EETGNIKNLVSGRHYTPGTVCYRTTGQGTQPCGKCAFREAIGTGKIVRHITHVDHV 264

Query: 533 TKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
             E     +              L   DI+E  + +  L  AK+ AE+ +  KS FLA +
Sbjct: 265 DFEITATPVYDDTGNEIIGG--LLRFEDITEKLKVERMLQEAKEKAEESNRLKSAFLANM 322

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHEIRTPL AIIGFS++I              EY   +  +  L+L +++D+LD+SKIE+
Sbjct: 323 SHEIRTPLNAIIGFSDLICQTD----DVEEKEEYIRIVTSNNELLLQLIDDILDLSKIEA 378

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712
           G M+  + P  ++E + +    +Q       + I  +       I  D   + Q+ +N++
Sbjct: 379 GTMDFSYAPTDINELMEDICLQMQQKNQRPEVQIMFTEKEPGCVINTDRLRLSQVIMNLM 438

Query: 713 SNAIHFTPSGGQIIISTTH-TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           +NA+ FT  G  I +        +E+   V+DTG+G+   +  K  + F ++        
Sbjct: 439 NNAMKFTSEGS-ITLGYRLTRQKDELYFFVKDTGIGIPADQAGKVFERFVKLNTFI---- 493

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
           +GTGLGL + + +++   G   + +   KG+      P+ +
Sbjct: 494 KGTGLGLAICRVIIERLGGTIGVETREGKGSCFWFRLPVRE 534


>gi|228913678|ref|ZP_04077305.1| hypothetical protein bthur0012_9170 [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228845966|gb|EEM90990.1| hypothetical protein bthur0012_9170 [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 896

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 79/338 (23%), Positives = 147/338 (43%), Gaps = 18/338 (5%)

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            +D++ +            +    +  +L      T E        + +   L++  ++L
Sbjct: 395 HQDLIHQTVDNLGLTIHSIMGRMRIQTLLHESQAMTEELQVQSEELQTQAEELQMQAEEL 454

Query: 549 PFSSCYSLTMHDISEWKQEKN-----KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
             ++    +  + +E K         +L        + S +KS+FLA +SHE+RTPL +I
Sbjct: 455 RTTNEQLESRTEEAEQKTADLQITKLELEEKASELLRSSKYKSEFLANMSHELRTPLNSI 514

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +  SE++K      L +    E A  I  SG  +L ++ND+LD+SK+E+GK+++ FE  +
Sbjct: 515 LLLSEMLKENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIFEATN 573

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSG 722
           + +  +         A +K +      ++ IP +   D + ++QI  N+LSNA  FT  G
Sbjct: 574 ISDMAASMHQNFLHIAAQKNVEFTVEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKG 633

Query: 723 GQ------IIISTTHTS-----NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
                   I  S           + + + V+DTG+G+   + +   + F Q   +   + 
Sbjct: 634 SVSLHFDSIETSNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGATIRKY 693

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            GTGLGL + K       G   + S   +G+   +  P
Sbjct: 694 GGTGLGLSICKEFARLLGGWITLESHVGEGSTFTVYIP 731


>gi|229120612|ref|ZP_04249857.1| hypothetical protein bcere0016_9230 [Bacillus cereus 95/8201]
 gi|228662897|gb|EEL18492.1| hypothetical protein bcere0016_9230 [Bacillus cereus 95/8201]
          Length = 896

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 79/338 (23%), Positives = 147/338 (43%), Gaps = 18/338 (5%)

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            +D++ +            +    +  +L      T E        + +   L++  ++L
Sbjct: 395 HQDLIHQTVDNLGLTIHSIMGRMRIQTLLHESQAMTEELQVQSEELQTQAEELQMQAEEL 454

Query: 549 PFSSCYSLTMHDISEWKQEKN-----KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
             ++    +  + +E K         +L        + S +KS+FLA +SHE+RTPL +I
Sbjct: 455 RTTNEQLESRTEEAEQKTADLQITKLELEEKASELLRSSKYKSEFLANMSHELRTPLNSI 514

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +  SE++K      L +    E A  I  SG  +L ++ND+LD+SK+E+GK+++ FE  +
Sbjct: 515 LLLSEMLKENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIFEATN 573

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSG 722
           + +  +         A +K +      ++ IP +   D + ++QI  N+LSNA  FT  G
Sbjct: 574 ISDMAASMHQNFLHIAAQKNVEFTVEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKG 633

Query: 723 GQ------IIISTTHTS-----NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
                   I  S           + + + V+DTG+G+   + +   + F Q   +   + 
Sbjct: 634 SVSLHFDSIETSNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGATIRKY 693

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            GTGLGL + K       G   + S   +G+   +  P
Sbjct: 694 GGTGLGLSICKEFARLLGGWITLESHVGEGSTFTVYIP 731


>gi|225390054|ref|ZP_03759778.1| hypothetical protein CLOSTASPAR_03804 [Clostridium asparagiforme
           DSM 15981]
 gi|225043882|gb|EEG54128.1| hypothetical protein CLOSTASPAR_03804 [Clostridium asparagiforme
           DSM 15981]
          Length = 1138

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 93/384 (24%), Positives = 166/384 (43%), Gaps = 20/384 (5%)

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPV--EDILRKP 496
                R+          +     + I I +   G I   +R   K+ G     ++I+ + 
Sbjct: 357 RANASREAVRRDRLFNLMTRYVPNVIVIADSGTGAIEYASRNTEKVLGIEDTFDNIIDER 416

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--- 553
               +       +   + E+ +         +       +  + L +   ++        
Sbjct: 417 TLGCVAPRDRQAVLELVREVRAGRKSSGSLSMHFTRPDTQADIILALNAYRIAEQDSSQS 476

Query: 554 -YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
             +LT+ DI+E  Q + +L  A    E+  + KS FLA +SH+IRTPL A+IG + +   
Sbjct: 477 FITLTLEDITESVQSRRRLEEALLNEERAGAAKSTFLASMSHDIRTPLNAVIGLTNLAL- 535

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
               P  + + +E    I  S  L+L ++ND+LD+SKIESGKM L      L E ++  +
Sbjct: 536 --CTPNDSKKVMECLQKIANSSQLLLGLINDVLDMSKIESGKMQLAETEFELGEWLAGVV 593

Query: 673 SLVQLYANEKRILIRTS---FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
           +++Q   + +      +     + +  +  D   + Q+  N+L NA+ FTP GG+I +  
Sbjct: 594 TVIQSQTSVRGQHFDVNAWNITHEL--LCGDTVRLSQVLTNVLGNAVKFTPKGGEIYLEI 651

Query: 730 THTSN-----EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
           +   +        + R+ DTGVGM+   L    + F +  N+     +GTGLG+ + K +
Sbjct: 652 SEIPSPDPASARFVFRISDTGVGMSREYLSHIFEMFTREQNAYSQGVQGTGLGMAITKRI 711

Query: 785 VDANMGKFYIFSTPAKGTLIEIIF 808
           VD   G   + S P KGT   +  
Sbjct: 712 VDLMGGSIRVESEPGKGTTFTVEI 735


>gi|209523505|ref|ZP_03272059.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
 gi|209495910|gb|EDZ96211.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
          Length = 1391

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 77/295 (26%), Positives = 151/295 (51%), Gaps = 25/295 (8%)

Query: 535  EEKLLSLRIIIKKLPFSSCYSLTM----HDISEWKQEKNKLSH-------AKKIAEKESS 583
            +   +     I+ L   +            +S+ K+++ +L++         + A+  + 
Sbjct: 851  DHNRVWTLDEIELLEAVARQLGIAIAHAQLLSQEKEQRQELTYKNIKLKKMTQEAKAANR 910

Query: 584  HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
             KS+FLA +SHEIRTP+ A++GF++++++     + +P+   Y   I  SG  +L ++ND
Sbjct: 911  AKSEFLANMSHEIRTPMNAVLGFTDLLQST----ITDPKATSYIKAIASSGRTLLALIND 966

Query: 644  LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLR 702
            +LD+SKIE+GK+ LH+EPV++   ++E   + +  A+EK + +       +P  I+ D  
Sbjct: 967  ILDLSKIEAGKLQLHYEPVNIRTVINEIEHIFEQKASEKNLNLEVEVDPKLPYSIMTDEV 1026

Query: 703  SVKQIALNILSNAIHFTPSGGQIIISTTHTS--------NEEVILRVRDTGVGMTNYELE 754
             ++QI  NI+ N+I FT  G  + I+ + +         + ++ + + DTG+G++  +  
Sbjct: 1027 RLRQILFNIVGNSIKFTEFGS-VRITASCSQLKPNHPYNSIDLKIAITDTGIGISREDQH 1085

Query: 755  KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            K    F Q       +  GTGLGL + + +V    G  ++ S   +G+   +  P
Sbjct: 1086 KIFDSFTQSEGQSNRKYGGTGLGLTITERLVHLLGGSIHLESERDQGSTFTVDLP 1140



 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 49/494 (9%), Positives = 139/494 (28%), Gaps = 24/494 (4%)

Query: 98  ISEELPKTIGNYAFKMIG---MRLCDVSDILHI-DPNNHIGDLLKRQNTWYGKTTLWPIE 153
           IS  +    G    ++I    +   D+            I   L  Q ++  +  +   +
Sbjct: 222 ISNAIEDICGYRPDEIINNRVISYNDIIHPDDQKTVTAKILPALYAQESFIVEYRVIHRD 281

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS--HLHEIK 211
           G+     +       +       G  G  I  +    N   AL ++ ++      +    
Sbjct: 282 GSI--HWVYEKGRGKFDTQGNLIGIDG-AIFDITDRQNTELALHQKTEELDRFFSIALDL 338

Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK-YPLLTSEESSLP 270
              + VE     +  Q        ++     L   + H DDV  +      L  + S L 
Sbjct: 339 LCIADVEGRFLRLNQQWEISLGYPLEELEGRLFIEFVHPDDVQPSLDHISNLCQQNSVLN 398

Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330
               +   + +    +     + +            N         E E      ++   
Sbjct: 399 FVNRYQAKDGSYRWIEWRSTPVGDRI--YAAARDITNRKKAEIALQESEERWQFALEGNG 456

Query: 331 IPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389
              + ++      Y +  +  +  +++ +  +       L+      D   +  ++    
Sbjct: 457 DGVWDWNVETNQVYFSRRWKEILGFRAEEISDNLEEWEKLIHPD---DKLQVFDILHKHL 513

Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449
           +       +       +      +        +   + +   G + +  D + N+  ++ 
Sbjct: 514 NGETEQYISEHRIKCKDGHYKWILDRGRVMYRSLDGKPLQVIGTKTDISDRKKNELALKE 573

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL--EQNTPS 507
              +   + E       I +  G ++  + A  +++    + + + P +  +        
Sbjct: 574 SEEKFRQLAENIHQVFFINSATGEMIYVSPAYEEIWQQSRDSLYKNPSSWLMSVHPEDRD 633

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISE 563
            M   L + +SL +     +          +  +      +  +      Y+    DI+ 
Sbjct: 634 GMAEALNKQISLGIP--FNQTYRIVRPNGSIRWINCHAFPVRDNQGKIYRYTGIAEDITH 691

Query: 564 WKQEKNKLSHAKKI 577
            K  ++ L +  + 
Sbjct: 692 RKTIEHTLHNQLRK 705



 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 28/271 (10%), Positives = 79/271 (29%), Gaps = 11/271 (4%)

Query: 316 DEGENLTPETVDKCPIPFFVYSHGNL---FYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
              E      +   P   +  +        + + +   +  Y+  + I          + 
Sbjct: 191 QYSEVSFRALLANLPGAIYRCACDEFWTMKFISNAIEDICGYRPDEIINNRVIS---YND 247

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
               D+       +  +     +       I  +  +   +      K +     +  +G
Sbjct: 248 IIHPDDQKTVTAKILPALYAQESFIVEYRVIHRDG-SIHWVYEKGRGKFDTQGNLIGIDG 306

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
              +  D +  +  +  +  +L        D + I + EG  L  N+      GYP+E++
Sbjct: 307 AIFDITDRQNTELALHQKTEELDRFFSIALDLLCIADVEGRFLRLNQQWEISLGYPLEEL 366

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
             + F  F+  +       +++ +   +    L  +     K+     +      +    
Sbjct: 367 EGRLFIEFVHPDDVQPSLDHISNLCQQN--SVLNFVNRYQAKDGSYRWIEWRSTPVGD-- 422

Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
                  DI+  K+ +  L  +++  +    
Sbjct: 423 RIYAAARDITNRKKAEIALQESEERWQFALE 453



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 45/392 (11%), Positives = 109/392 (27%), Gaps = 34/392 (8%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGKTT 148
           D  G    ++++   ++G    ++ G    +      + P+ +HI +L ++ +       
Sbjct: 343 DVEGRFLRLNQQWEISLGYPLEELEGRLFIEFVHPDDVQPSLDHISNLCQQNSVLNFVNR 402

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR-ALGKRLDKKFSHL 207
               +G+  Y  I+  + P+          R +              AL +  ++    L
Sbjct: 403 YQAKDGS--YRWIEWRSTPVGD--------RIYAAARDITNRKKAEIALQESEERWQFAL 452

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA----HKDDVLKTEKY--PL 261
                G      E   ++  +     L  + +  S          H DD L+        
Sbjct: 453 EGNGDGVWDWNVETNQVYFSRRWKEILGFRAEEISDNLEEWEKLIHPDDKLQVFDILHKH 512

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK-----ESFEYLSHRNHPSLSAYFD 316
           L  E      +      + +          +  +                +         
Sbjct: 513 LNGETEQYISEHRIKCKDGHYKWILDRGRVMYRSLDGKPLQVIGTKTDISDRKKNELALK 572

Query: 317 EGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
           E E    +  +     FF+ S  G + Y +P++  + +       +       L+     
Sbjct: 573 ESEEKFRQLAENIHQVFFINSATGEMIYVSPAYEEIWQQSRDSLYKNPSSW--LMSVHPE 630

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
             +   + +    S         + + I     +   +    F   +   +     GI  
Sbjct: 631 DRDGMAEALNKQISLGIPF---NQTYRIVRPNGSIRWINCHAFPVRDNQGKIYRYTGIAE 687

Query: 436 EDVDTRINKRKMEIEVMQLC--SILEATSDGI 465
           +    +  +  +     QL    I++  +D I
Sbjct: 688 DITHRKTIEHTL---HNQLRKTLIIQKITDNI 716



 Score = 91.6 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 38/379 (10%), Positives = 111/379 (29%), Gaps = 28/379 (7%)

Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291
           P   + N+V S  +     D    T K       + S   +      + + +   +    
Sbjct: 234 PDEIINNRVISYNDIIHPDDQKTVTAKILPALYAQESFIVEYRVIHRDGSIHWVYEKGRG 293

Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK-----CPIPFFVYSHGNLFYANP 346
             +               +     +   +   E +D+       +       G     N 
Sbjct: 294 KFDTQGNLIGIDGAIFDITDRQNTELALHQKTEELDRFFSIALDLLCIADVEGRFLRLNQ 353

Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
            + +   Y  ++++E    +      P     +      L + +    +    ++  Q  
Sbjct: 354 QWEISLGY-PLEELEGRLFIE--FVHPDDVQPSLDHISNLCQQN----SVLNFVNRYQAK 406

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
             +   + +      +             +  + +  +  ++    +    LE   DG+ 
Sbjct: 407 DGSYRWIEWRSTPVGD------RIYAAARDITNRKKAEIALQESEERWQFALEGNGDGVW 460

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
             N E   +  +R   ++ G+  E+I    + +   +  +    +   L + L+ +  Q 
Sbjct: 461 DWNVETNQVYFSRRWKEILGFRAEEISDNLEEWEKLIHPDDKLQVFDILHKHLNGETEQY 520

Query: 525 LEKITLGSTKEEKLLSLRII---IKKLPFSSCYSLTM--HDISEWKQEKNKLSHAKKIAE 579
           +        K+     +      + +        +     DIS+ K+ +  L  +++   
Sbjct: 521 IS-EHRIKCKDGHYKWILDRGRVMYRSLDGKPLQVIGTKTDISDRKKNELALKESEEKFR 579

Query: 580 KESSHKSD--FLARVSHEI 596
           + + +     F+   + E+
Sbjct: 580 QLAENIHQVFFINSATGEM 598



 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/242 (9%), Positives = 54/242 (22%), Gaps = 13/242 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIG--MRLCDVSDILHIDPNNHIGDLLKRQNTW 143
            W+ +        S    + +G  A ++         +           I        T 
Sbjct: 459 VWDWNVETNQVYFSRRWKEILGFRAEEISDNLEEWEKLIHPDDKLQVFDILHKHLNGETE 518

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSG--FRGFGIVHVNRVDNDPRALGKRLD 201
              +          Y  I      +Y   R   G   +  G               K  +
Sbjct: 519 QYISEHRIKCKDGHYKWILDRGRVMY---RSLDGKPLQVIGTKTDISDRKKNELALKESE 575

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL------TEYYAHKDDVLK 255
           +KF  L E       +     ++         +  +++ S              +D    
Sbjct: 576 EKFRQLAENIHQVFFINSATGEMIYVSPAYEEIWQQSRDSLYKNPSSWLMSVHPEDRDGM 635

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
            E      S      +       N +      +   +++N  + + Y       +     
Sbjct: 636 AEALNKQISLGIPFNQTYRIVRPNGSIRWINCHAFPVRDNQGKIYRYTGIAEDITHRKTI 695

Query: 316 DE 317
           + 
Sbjct: 696 EH 697


>gi|167588508|ref|ZP_02380896.1| multi-sensor hybrid histidine kinase [Burkholderia ubonensis Bu]
          Length = 1238

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 116/705 (16%), Positives = 252/705 (35%), Gaps = 36/705 (5%)

Query: 118 LCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSG 177
           +  +      +P + +  +L+  N   G+      +       I+     + +R+     
Sbjct: 97  MRAIDVHDIDEPYDAVAAMLQSMNEGVGRRLRDVAQLDADSGLIE----RVQARSETSLA 152

Query: 178 FRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK 237
             G     ++             +  F+             K+   +       P  R +
Sbjct: 153 AIGKETERLDSQAETAVTDALAANTAFNRTIHALDQVRGHVKDIITVTDNVDDAP-NRYR 211

Query: 238 NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN-- 295
                     A                  ++         +  +     +    L+    
Sbjct: 212 LAPLRERMKAAFDGARNAMAIAAPNVDAAATRDVSNALEQVAADILVGNESLVALRGQVF 271

Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF--VYSHGNLFYANPSFLLLTK 353
           ++ S           ++   D  +    E VD   +                     +  
Sbjct: 272 AEPSAAPRYQEKEEQVTKALDALDRRLAEIVDPFALRILKARQRLDEAIAFQRRAARIKY 331

Query: 354 YKSV---------DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
             SV          D+ +AG   +     ++ D        L  S      A       +
Sbjct: 332 LSSVVMGGIEELTADLRLAGQGESTEQLERVDDEVREDIGKLAASANALRDALVANGQGE 391

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
            +R + +         A +    +  + +  ++   RI   +++    +L +  E     
Sbjct: 392 LSRAHDMVPLAAALAGAARRILAVKAHMLANDETMQRIV-AEVDTTANRLAAYAEQQ--- 447

Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
           +  ++ +   +  ++    + G     ++       +       +   ++  LS   R  
Sbjct: 448 VVRVDLQQRGI-VSQVYRAMAGAVGMIVVVSLLLAVVGFAISRRIGTSISNPLSNLTR-- 504

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM-HDISEWKQEKNKLSHAKKIAEKESS 583
               T+   +    LSLR+  +     +         + E ++   +L  A   AE  +S
Sbjct: 505 ----TMARIRGGSDLSLRVRHQGSDEVATLIAGFNTMLDEIERRDVELQAAIAAAEAANS 560

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
            KS+FLAR+SHEIRTP+  ++G +E+++  R       +   + + + RSG  +L I++D
Sbjct: 561 AKSEFLARMSHEIRTPMNGVLGMTELLQRTRLTA----KQRSFVDTVYRSGQTLLTIIDD 616

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLR 702
           +LD SKIE+GK+ L     +L + + + +SL++  A  K + +R    + +P  +  D  
Sbjct: 617 ILDFSKIEAGKLMLERIEFNLYQLLDDVVSLLEPTAARKGLALRFRRQDPVPEWVRGDPV 676

Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
            ++QI  N++ NAI FT  G Q+ ++  ++ +  V+  + D+G+G+      +  KPF Q
Sbjct: 677 RLRQILTNLVGNAIKFTERG-QVELAVAYSDHGLVVFTIADSGIGIAPDVSAQLFKPFQQ 735

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
             +S   +  GTGLGL +++ + +   G   + S P +G++  + 
Sbjct: 736 ADSSTARKYGGTGLGLVISRQLAEMMGGTLTVESAPGRGSVFTVT 780


>gi|118476618|ref|YP_893769.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam]
 gi|196044360|ref|ZP_03111596.1| sensor histidine kinase/response regulator [Bacillus cereus
           03BB108]
 gi|225862944|ref|YP_002748322.1| sensor histidine kinase/response regulator [Bacillus cereus
           03BB102]
 gi|229183305|ref|ZP_04310534.1| hypothetical protein bcere0004_8810 [Bacillus cereus BGSC 6E1]
 gi|118415843|gb|ABK84262.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam]
 gi|196024999|gb|EDX63670.1| sensor histidine kinase/response regulator [Bacillus cereus
           03BB108]
 gi|225788896|gb|ACO29113.1| sensor histidine kinase/response regulator [Bacillus cereus
           03BB102]
 gi|228600175|gb|EEK57766.1| hypothetical protein bcere0004_8810 [Bacillus cereus BGSC 6E1]
          Length = 896

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 79/338 (23%), Positives = 147/338 (43%), Gaps = 18/338 (5%)

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            +D++ +            +    +  +L      T E        + +   L++  ++L
Sbjct: 395 HQDLIHQTVDNLGLTIHSIMGRMRIQTLLHESQAMTEELQVQSEELQTQAEELQMQAEEL 454

Query: 549 PFSSCYSLTMHDISEWKQEKN-----KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
             ++    +  + +E K         +L        + S +KS+FLA +SHE+RTPL +I
Sbjct: 455 RTTNEQLESRTEEAEQKTADLQITKLELEEKASELLRSSKYKSEFLANMSHELRTPLNSI 514

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +  SE++K      L +    E A  I  SG  +L ++ND+LD+SK+E+GK+++ FE  +
Sbjct: 515 LLLSEMLKENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIFEATN 573

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSG 722
           + +  +         A +K +      ++ IP +   D + ++QI  N+LSNA  FT  G
Sbjct: 574 ISDMATSMQQNFLHIAAQKNVEFTVENSDTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKG 633

Query: 723 GQ------IIISTTHTS-----NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
                   I  S           + + + V+DTG+G+   + +   + F Q   +   + 
Sbjct: 634 SVSLHFDSIETSNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGATIRKY 693

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            GTGLGL + K       G   + S   +G+   +  P
Sbjct: 694 GGTGLGLSICKEFARLLGGWITLESHVGEGSTFTVYIP 731


>gi|115376757|ref|ZP_01463983.1| sensory box sensor histidine kinase [Stigmatella aurantiaca
           DW4/3-1]
 gi|310824830|ref|YP_003957188.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|115366244|gb|EAU65253.1| sensory box sensor histidine kinase [Stigmatella aurantiaca
           DW4/3-1]
 gi|309397902|gb|ADO75361.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 991

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 106/775 (13%), Positives = 237/775 (30%), Gaps = 63/775 (8%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID---PNNHIGDLLKRQNTWYGK 146
           D  G+L+  +  L K +G  A  + G  L  +++    D    +  + + LK +  W G+
Sbjct: 228 DEQGFLRYANPALEKLLGYGAGGLNGKHLSTLNNSGPADAVQQSLAVAEALKTRGEWVGE 287

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF-GIVHVNRVDNDPRALGKRLDKKFS 205
                 +GT     + + A+ +       S  +     V             ++ ++++ 
Sbjct: 288 WCNLRKDGTCFMTRVRITAMDLGGARHWVSVHQDVTAQVRTIHKVEALAIELRQGEERYR 347

Query: 206 HLHEIKKGHSSVEKEKYDI---FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY-PL 261
            L E                      S     R +           H +D +++      
Sbjct: 348 SLVEATSEIVWNTPPSGQFTTKQPGWSAFTGQRFEELRGWGWLDAVHPEDRVQSHHAWDE 407

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
                ++   +      +      +     ++N      E++      +     ++    
Sbjct: 408 AVLNRTTYQVEHRVRRHDGVYRYMQGRAVPVKNEDGTVREWIGIHRDITPRIEVEQALRQ 467

Query: 322 TPE------------------TVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEI 362
           + E                   V   P+ F +          NP+   +      + +  
Sbjct: 468 SAERERQARAETERALALVDSLVTASPVSFALLDTQLRYLKVNPALACINGVPVEEHLGR 527

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF--IPFEK 420
                       L          L +   T      +    +      +   +    F  
Sbjct: 528 T-------VREVLPRVWGDVEPPLRQVLETGQPLVNQEGATEAPAHPGVIRHYLSSYFPV 580

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRK---MEIEVMQL--------------CSILEATSD 463
                E         E  D    +R+   +     +L                ++E  ++
Sbjct: 581 KGSDGEVAGVGTTFIEVTDQVKARRQVALLAEAGQRLFASLDEKETLEQVAQLMVETVAE 640

Query: 464 GIAI--INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
           G  +  ++ EG +                    +P+ + +              ++    
Sbjct: 641 GCLVDLLSEEGRLEQAVAIHRAPGAAAPSWEPFRPWELSVPLERRQEALGADQPLVFQQD 700

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE 581
           R           +    +S+       PF       + +++         +      +K 
Sbjct: 701 RTVCILPLRVRGRALGTISVVTPPPSRPFHPDEVRLLEELASRAAVAIDHARLHTALQKA 760

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP---RYIEYANYIDRSGNLVL 638
              + +FL+  SHE++TPLT +    +V+  +       P   R   Y +   +  + + 
Sbjct: 761 IHVRDEFLSVASHELKTPLTPLSLKLQVLAREVAQQPETPFTRRVQGYIDTGRKQISKLT 820

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
           +++ DLLD+S+I +G++ L  + + L     E  S  +  A +    +     +      
Sbjct: 821 ELIGDLLDVSRIGAGRLQLERQEIDLGALAREVASRFEPAAAQAGSTLSVRVEHTCLGSW 880

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
            D   ++QI  N+L NA+ +   G  + +     + + V + V D G+G+    L +  +
Sbjct: 881 -DSARIEQILTNLLDNALKYGF-GRPVSLHVRAEAEKAV-VTVMDHGIGIEPVHLSRIFE 937

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
            F +  +  +    G GLGL + + +V A+ G   + S P   TL  +  PL   
Sbjct: 938 RFERAVS--ERHYGGLGLGLYITRELVQAHGGSIRVESEPNIRTLFTVELPLARA 990



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 46/333 (13%), Positives = 92/333 (27%), Gaps = 8/333 (2%)

Query: 272 QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI 331
           +    +  L +   +   G   + S               +A   E        V   PI
Sbjct: 32  ETRLESQALFRALVRSTVGPFADLSTVFLLEEGGATLVLGAAQHVEPSLTEALQVRSAPI 91

Query: 332 PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR 391
                  G       +   +        +         L       N    P+ +  S  
Sbjct: 92  R-LRADEGLPGQVIQTGKAVLGSSLTQGVPSLPAELHALLERHPPLNFLAVPLRVSGSLL 150

Query: 392 TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV 451
             +A   R   +                   Q    +       +  +TR     ++ E+
Sbjct: 151 GVLAV-GRETPLTEEDLLFFQELADRTALRLQDARLLEAAQDSRKKTETRTEPLHLQREL 209

Query: 452 MQLCS-ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
            +L + ILE+ ++G+++ + +G +   N A+ KL GY    +  K  +          + 
Sbjct: 210 PKLHTRILESMAEGVSVSDEQGFLRYANPALEKLLGYGAGGLNGKHLSTLNNSGPADAVQ 269

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLL--SLRIIIKKLPFSSCYSLTMHDISEWKQEK 568
             L    +L  R           K+       +RI    L  +  +     D++   +  
Sbjct: 270 QSLAVAEALKTRGEWVGEWCNLRKDGTCFMTRVRITAMDLGGARHWVSVHQDVTAQVRTI 329

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEI--RTP 599
           +K+        +        +   S EI   TP
Sbjct: 330 HKVEALAIELRQGEERYRSLVEATS-EIVWNTP 361



 Score = 70.4 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 45/484 (9%), Positives = 121/484 (25%), Gaps = 27/484 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D      +++  L    G    + +G  + +V   +  D    +  +L+       +  
Sbjct: 500 LDTQLRYLKVNPALACINGVPVEEHLGRTVREVLPRVWGDVEPPLRQVLETGQPLVNQEG 559

Query: 149 LWPIEGTNLYVPIDL-AALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                     +   L +  P+   + E +G  G   + V       R +    +      
Sbjct: 560 ATEAPAHPGVIRHYLSSYFPVKGSDGEVAGV-GTTFIEVTDQVKARRQVALLAEAGQRLF 618

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
             + +  +  +  +  + +         +  +         H+        +      E 
Sbjct: 619 ASLDEKETLEQVAQLMVETVAEGCLVDLLSEEGRLEQAVAIHRAPGAAAPSWEPFRPWEL 678

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTL----QNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
           S+P +     +  +Q    Q   T+          +   +S    P    +  +   L  
Sbjct: 679 SVPLERRQEALGADQPLVFQQDRTVCILPLRVRGRALGTISVVTPPPSRPFHPDEVRLLE 738

Query: 324 ETVDKCPIPFFVYSHGNLF----YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
           E   +  +               +    FL +  ++    +        +L         
Sbjct: 739 ELASRAAVAIDHARLHTALQKAIHVRDEFLSVASHELKTPLTPLSLKLQVLAREVAQQPE 798

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
                   R          ++  +     + L ++        Q        G    +V 
Sbjct: 799 TPFT---RRVQGYIDTGRKQISKLTELIGDLLDVS-RIGAGRLQLERQEIDLGALAREVA 854

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
           +R      +     L   +E T  G    +    I      ++ L    ++    +P ++
Sbjct: 855 SRFEPAAAQA-GSTLSVRVEHTCLG--SWDSA-RIEQI---LTNLLDNALKYGFGRPVSL 907

Query: 500 FLEQNTPSVMNHYLTE------ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553
            +       +   +        +    + +  E+           L L I  + +     
Sbjct: 908 HVRAEAEKAVVTVMDHGIGIEPVHLSRIFERFERAVSERHYGGLGLGLYITRELVQAHGG 967

Query: 554 YSLT 557
               
Sbjct: 968 SIRV 971



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/406 (8%), Positives = 94/406 (23%), Gaps = 36/406 (8%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQNTWY 144
            WN    G             G    ++ G    D         ++H   + +  + T+ 
Sbjct: 357 VWNTPPSGQFTTKQPGWSAFTGQRFEELRGWGWLDAVHPEDRVQSHHAWDEAVLNRTTYQ 416

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            +  +   +G  +Y  +   A+P+ + +         GI        +     ++  ++ 
Sbjct: 417 VEHRVRRHDG--VYRYMQGRAVPVKNEDGTVR--EWIGIHRDITPRIEVEQALRQSAERE 472

Query: 205 S------------------------HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV 240
                                     L + +  +  V      I          R   +V
Sbjct: 473 RQARAETERALALVDSLVTASPVSFALLDTQLRYLKVNPALACINGVPVEEHLGRTVREV 532

Query: 241 SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF 300
                           E    L ++E +         I     +     G+    +    
Sbjct: 533 LPRVWGDVEPPLRQVLETGQPLVNQEGATEAPAHPGVIRHYLSSYFPVKGSDGEVAGVGT 592

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDI 360
            ++   +                           +     L     +   L    S +  
Sbjct: 593 TFIEVTDQVKARRQVALLAEAGQRLFASLDEKETLEQVAQLMVETVAEGCLVDLLSEEGR 652

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
                                +P  L         A      + + ++ ++ +  +    
Sbjct: 653 LEQAVAIHRAPGAAAPSWEPFRPWELSVPLERRQEALGADQPLVFQQDRTVCILPLRVRG 712

Query: 421 ANQF-------PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459
                      P + P +  E   ++   ++  + I+  +L + L+
Sbjct: 713 RALGTISVVTPPPSRPFHPDEVRLLEELASRAAVAIDHARLHTALQ 758


>gi|170751967|ref|YP_001758227.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium radiotolerans JCM 2831]
 gi|170658489|gb|ACB27544.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium radiotolerans JCM 2831]
          Length = 846

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 147/765 (19%), Positives = 275/765 (35%), Gaps = 61/765 (7%)

Query: 51  QSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVR----FTWNIDAHGYLKEISEELPKTI 106
                   +   + +    +       P    +R    F W +DA G L           
Sbjct: 130 ARPVEAPVEPRAAPSGAEGAPPLQPQSPSTVPLRRDDRFLWRLDAAGVLTT-------LT 182

Query: 107 GNYA-FKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAA 165
           G  A   ++G R  D++    +   + +   L+ + T+ G+  +   +       +DL+ 
Sbjct: 183 GPEALSGLVGQRWQDLAASGRLSGADAVLAALRDRRTFRGEPAVL--DAGTGAFRVDLSG 240

Query: 166 LPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF 225
            P+   +  FSGF GFG++                +       E                
Sbjct: 241 APLGRGDAAFSGFGGFGLIRSVPAAPPEPTPEAVREPTPIATPE-PAACEDAGAAIVPAE 299

Query: 226 SQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTK 285
             +   P     + V++      H              + + +        +   +    
Sbjct: 300 PGEVAIPVGVDADPVAAPLSNDEHAAFREIARALGARYAGDEAESGSPRTES--GSVMPF 357

Query: 286 KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYAN 345
                        S +  +  +   ++   D       + +   P+P  V+ +G +  AN
Sbjct: 358 PAPQAGPAETRAVSDDVGADPDTAEIAPVDDAAPAPATDLLGGLPLPVLVHRNGTIVAAN 417

Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA-IKPVMLYRSDRTCIAASARLHTIQ 404
            +FL LT Y  +  +   G    L   P         +   +  +D            + 
Sbjct: 418 GAFLDLTGYPDLPSLARVGFSGLLPGLPAAEAPEPSARRTTVTTADGGARPVELLGGALP 477

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
           W    +  +   P E+A+                  R+ +           + L+A   G
Sbjct: 478 WAGATATCLVARPVEEADVADALRA----------ERLARAAQTERTASAEATLDALETG 527

Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
           +  ++  G I++ NRA + LFG    +I+   F    + ++   +   L           
Sbjct: 528 VVTVDAAGRIVALNRAATDLFGCDPREIVGSTFVTLFDGDSVLTVADALRGAA------- 580

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
                       +++ L      L  ++     +  I   + E  + +   +        
Sbjct: 581 ---------PGRRVVRLAGAPVSLTVAAGQGRRVVQIGRAESEAAERAAEGRPDPA--PA 629

Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
           ++D L R+   +R PLT II  +  +  + FGPLG+ RY      I  SG  + + V  L
Sbjct: 630 RADALGRLEGAVRQPLTGIIDLAAAMLKEPFGPLGDARYRGCLAEIKASGEAMRERVGKL 689

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704
           LD++ +E+G ++L    + L++ V+  ++ +Q  A   RI++RTSF+ +I  + AD RSV
Sbjct: 690 LDLAAVEAGSLHLEPRALDLNDVVASCVARLQGEAARGRIVMRTSFSTDIGDLEADERSV 749

Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764
            + A  ++ NAI  + +G QII+ST  T    + +RVRDTG G              +  
Sbjct: 750 SRAASLVIENAIRRSTAGSQIIVSTGSTERAGIAVRVRDTGAGHAP-----------RSE 798

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             Q    +    GL L +A+V+AN G+  + + P  GTL+EII P
Sbjct: 799 APQDDVED----GLALPRALVEANGGRLELSARPEDGTLVEIIMP 839


>gi|167469186|ref|ZP_02333890.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Yersinia pestis FV-1]
          Length = 850

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 95/371 (25%), Positives = 160/371 (43%), Gaps = 29/371 (7%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
             ++E        I+ +   GI+I+   +G  + +N                  +   L 
Sbjct: 328 ALRLEEHEQFNRKIVASAPVGISILRISDGTNILSNELA-------------HNYISLLT 374

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
                     +T I+       ++ +    T     L +  +  +          + D+S
Sbjct: 375 NEDR----ERITRIICERQANFVDVM----TSNNNNLQISFVHSRYRNEDVAICVLVDVS 426

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
              + +  L      AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R
Sbjct: 427 ARVKMEESLQEMATAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPQGVDR 485

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                  ++ S  L+L I++D+LD SKIES ++ +     S  E ++   +       +K
Sbjct: 486 ---LVTAMNNSSGLLLKIISDILDFSKIESEQLKIEPSEFSTVEVITHITANYLPLVVKK 542

Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
           R+ +      ++PR I  D   ++Q+  N+L+NAI FT +G  II+         +  RV
Sbjct: 543 RLGLYCFIEPDVPRLIEGDPVRLQQVISNLLNNAIKFTDTG-CIILQVRVRD-CYLEFRV 600

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
           RDTGVG+ + E+ +   PF Q+    Q   +GTGLGL + + +V+   G   + S    G
Sbjct: 601 RDTGVGIDSREINQLFDPFFQVGTGVQRHFQGTGLGLAICEKLVNLMDGDVEVISELGMG 660

Query: 802 TLIEIIFPLYD 812
           ++  I  PLY 
Sbjct: 661 SIFAIRIPLYH 671


>gi|145599745|ref|YP_001163821.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Yersinia pestis Pestoides F]
 gi|145211441|gb|ABP40848.1| two component sensor kinase/response regulator protein RcsC
           [Yersinia pestis Pestoides F]
          Length = 926

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 95/371 (25%), Positives = 160/371 (43%), Gaps = 29/371 (7%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
             ++E        I+ +   GI+I+   +G  + +N                  +   L 
Sbjct: 328 ALRLEEHEQFNRKIVASAPVGISILRISDGTNILSNELA-------------HNYISLLT 374

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
                     +T I+       ++ +    T     L +  +  +          + D+S
Sbjct: 375 NEDR----ERITRIICERQANFVDVM----TSNNNNLQISFVHSRYRNEDVAICVLVDVS 426

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
              + +  L      AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R
Sbjct: 427 ARVKMEESLQEMATAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPQGVDR 485

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                  ++ S  L+L I++D+LD SKIES ++ +     S  E ++   +       +K
Sbjct: 486 ---LVTAMNNSSGLLLKIISDILDFSKIESEQLKIEPSEFSTVEVITHITANYLPLVVKK 542

Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
           R+ +      ++PR I  D   ++Q+  N+L+NAI FT +G  II+         +  RV
Sbjct: 543 RLGLYCFIEPDVPRLIEGDPVRLQQVISNLLNNAIKFTDTG-CIILQVRVRD-CYLEFRV 600

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
           RDTGVG+ + E+ +   PF Q+    Q   +GTGLGL + + +V+   G   + S    G
Sbjct: 601 RDTGVGIDSREINQLFDPFFQVGTGVQRHFQGTGLGLAICEKLVNLMDGDVEVISELGMG 660

Query: 802 TLIEIIFPLYD 812
           ++  I  PLY 
Sbjct: 661 SIFAIRIPLYH 671


>gi|170680522|ref|YP_001744413.1| sensory histidine kinase AtoS [Escherichia coli SMS-3-5]
 gi|218700688|ref|YP_002408317.1| sensory histidine kinase AtoS [Escherichia coli IAI39]
 gi|170518240|gb|ACB16418.1| sensory box histidine kinase AtoS [Escherichia coli SMS-3-5]
 gi|218370674|emb|CAR18483.1| sensory histidine kinase in two-component regulatory system with
           AtoC [Escherichia coli IAI39]
          Length = 608

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 82/371 (22%), Positives = 170/371 (45%), Gaps = 28/371 (7%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            + +         I+E  +DG+  I+R+G + + N A   + GY   +++ +P+++    
Sbjct: 254 AQALRETRTLNDLIIENAADGVIAIDRQGDVTTMNPAAEVITGYQRHELVGQPYSMLF-- 311

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMH 559
              +     + + L                ++ + + L +   ++  +        +   
Sbjct: 312 -DNTQFYSPVLDTLEHGTEHV-ALEISFPGRD-RTIELSVTTSRIHNTHGEMIGALVIFS 368

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           D++  K+ + +++ A+++A        + +A V+HE+R PLTAI G+ ++++ Q    + 
Sbjct: 369 DLTARKETQRRMAQAERLAT-----LGELMAGVAHEVRNPLTAIRGYVQILRQQTSDLI- 422

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
              + EY + + +  + +  ++  LL+ S+    +    ++ VSL+  V E + LVQ   
Sbjct: 423 ---HQEYLSVVLKEIDSINKVIQQLLEFSRPRHSQ----WQQVSLNALVEETLVLVQTAG 475

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
            + R+   +   N +  I AD   +KQ+ LNIL NA+    + G+I I T   S+ +  +
Sbjct: 476 VQARVDFISELDNELSPINADRELLKQVLLNILINAVQAISARGKIRIRTWQYSDSQQAI 535

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            + D G G+     +K   PF     S      GTGLGL L++ +++A+ G   + S P 
Sbjct: 536 SIEDNGCGIDLSLQKKIFDPFFTTKAS------GTGLGLALSQRIINAHQGDIRVASLPG 589

Query: 800 KGTLIEIIFPL 810
            G    +I P+
Sbjct: 590 YGATFTLILPI 600



 Score = 40.4 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/117 (10%), Positives = 37/117 (31%), Gaps = 6/117 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G +  ++       G    +++G     +    +    + + D L+          
Sbjct: 278 IDRQGDVTTMNPAAEVITGYQRHELVGQPYSMLF--DNTQFYSPVLDTLEHGTEHVALEI 335

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
            +P     + + +  +   I++ + E  G     I        + +    + ++  +
Sbjct: 336 SFPGRDRTIELSVTTS--RIHNTHGEMIGA--LVIFSDLTARKETQRRMAQAERLAT 388


>gi|332981485|ref|YP_004462926.1| integral membrane sensor signal transduction histidine kinase
           [Mahella australiensis 50-1 BON]
 gi|332699163|gb|AEE96104.1| integral membrane sensor signal transduction histidine kinase
           [Mahella australiensis 50-1 BON]
          Length = 473

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 61/248 (24%), Positives = 122/248 (49%), Gaps = 4/248 (1%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E  +  N  +   +  E     +S+F+A  SHE++TPL++I   ++ +       +    
Sbjct: 227 EIIELGNAFNAMSQRVESLDKARSEFVANASHELKTPLSSIKVLAQSLVQDPNADIKV-- 284

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
           Y E+   ID   + + +++NDLL + +++  K ++ +  V L+  ++E + +++  A  K
Sbjct: 285 YKEFMYDIDSEIDRMNNVINDLLTLVQLDKDKPDITYTDVDLERLINEVLKVLRPLAAAK 344

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
            I +       +  I  D   +KQ+ +NI+ NA+ +TP GG++ +        E ++ V 
Sbjct: 345 NIKLNYRCEEGV-SIRGDAPKLKQMLINIIDNALKYTPEGGKVDVCLRKKD-GEALIEVV 402

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G+G+   +L      F ++  ++     GTGLGL +A+ +   + G   + S+  +GT
Sbjct: 403 DNGMGIPRADLPYIFDRFYRVDKARSRATGGTGLGLSIAQKIAYLHKGTINVESSEGEGT 462

Query: 803 LIEIIFPL 810
              I  PL
Sbjct: 463 RFSIKLPL 470


>gi|291085775|ref|ZP_06354028.2| phosphate regulon sensor kinase PhoR [Citrobacter youngae ATCC
           29220]
 gi|291069813|gb|EFE07922.1| phosphate regulon sensor kinase PhoR [Citrobacter youngae ATCC
           29220]
          Length = 422

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 71/427 (16%), Positives = 151/427 (35%), Gaps = 37/427 (8%)

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             +L       I     L  + W     L +         +        G+    +  + 
Sbjct: 24  WFLLASVTGLLIWHFWNLLRLSW----WLWVDRSMTPPPGRGSWEPLLYGLHQMQLRNKK 79

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            +R++   + +  S  E+  D + +   EG I   N    ++ G    D   +     L 
Sbjct: 80  RRRELGNLIKRFRSGAESLPDAVVLTTEEGGIFWCNGLAQQVLGLRWPDDNGQNILNLLR 139

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
                    +   + + D  + +  +            L I +          +   D++
Sbjct: 140 YP------EFTQYLKTRDFSRPINLVLNTGRH------LEIRVMPYTDKQ-LLMVARDVT 186

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  Q +                + +F A  SHE+RTPLT + G+ E+++          +
Sbjct: 187 QMHQLEG--------------SRRNFFANASHELRTPLTVLQGYLEMMQEHPLEGTTREK 232

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                + +      +  +V  LL +SKIE+    L  E V +   +   +       ++ 
Sbjct: 233 A---LHTMREQTYRMEGLVKQLLTLSKIEAAPALLLNEKVDVPMMLR-VVEHEAQTLSQN 288

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
                    +++  +  +   ++    N++ NA++ TP+G  I +   H ++      V 
Sbjct: 289 NHTFTFDIDSHL-SVRGNEDQLRSAISNLVYNAVNHTPAGTHIAVRWQHIASG-AEFSVA 346

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G G+    + +  + F ++  ++  +  G+GLGL + K  +  +  +  I STP KGT
Sbjct: 347 DNGPGIAAEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHALHHHDSRLNIESTPGKGT 406

Query: 803 LIEIIFP 809
               + P
Sbjct: 407 RFSFVIP 413


>gi|289661809|ref|ZP_06483390.1| sensory box histidine kinase/response regulator hybrid [Xanthomonas
           campestris pv. vasculorum NCPPB702]
          Length = 940

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 103/776 (13%), Positives = 221/776 (28%), Gaps = 82/776 (10%)

Query: 99  SEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNT-WYGKTTLWPIEGTNL 157
           ++     +G    + +G  L ++           I      Q + +          G   
Sbjct: 52  NDAYAPILGPRHAQALGAPLRELWADAWEAVRAPIEAAFSGQASRFEELPIGMNRYGVPE 111

Query: 158 YVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSV 217
                 +  PIY  + +  G   F + +        +A      ++   L E      + 
Sbjct: 112 QTWWTFSFSPIYLDDGQVGGA--FCVTNEVTARKLAQARLADEHERLIRLFEQAPMFMAF 169

Query: 218 EKEKYDIFSQQSP-----PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ 272
                      +P       H  +  +  +     A +   L        +    +    
Sbjct: 170 LSGPQHRVEFANPCYSRLIGHRDVIGRPLAEALPDAAEQGHLLRLDEVYRSGRAFAANAL 229

Query: 273 E----DFHTINLNQYTKKQYFGTLQNN----SKESFEYLSHRNHPSLSAYFDEGENLTPE 324
                        +      +  +       S    + L   +  SL     E E    +
Sbjct: 230 PYNVQAVPGGPSERRLLDLVYQPIAGADGTISGIFVQGLDITDRISLERAMREAEVRNRQ 289

Query: 325 TVDKCPIPFFVYSH--GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
            +D       + +   G +   N     +  +   + +     L        +     + 
Sbjct: 290 ILDSVMDYAIIATDMHGRVTSWNEGARRILGWSEAEMLGQ--SLQRTFTPEDVERRQMLI 347

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
                    + +        ++ + E   A          +  E +    +  +    R+
Sbjct: 348 EAAAALESGSGMDERWH---VRKSGERFWA-NGSLMVLREETGEAIGFVKVLRDRTAERL 403

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG---YPVEDILRKPFTV 499
               ++    +L +++ A+S  I   + +         + +L G             +  
Sbjct: 404 ASEALQKSERRLDALVRASSQSIFSASADWR------QLRQLVGDGVLSGAVSATPHWQE 457

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YS 555
            +  +  + +   L +  +      +E   LG   + ++    +    L         + 
Sbjct: 458 MVHPDDRARLADVLAQTTANRSGVDVEYRVLG--ADGRVGWTLMRAIPLLDEQERIAEWF 515

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKS--------------------DFLARVSHE 595
            T  DI++ +  + +L    +  E+    +S                         ++H+
Sbjct: 516 GTSADITDKRVAEEQLRQLTETLEERVRERSAALLLAEEKLRQSQKMEAVGQLTGGLAHD 575

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
               LTAI    E +   R       R   Y      S      +   LL  S+    + 
Sbjct: 576 FNNLLTAISVGLE-LLQTRIEQGKYDRLDRYVEMAQSSAARATALTQRLLAFSR----RQ 630

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715
            L    V ++  V +   ++        I ++   A+   ++L D   ++   LN+  NA
Sbjct: 631 TLAPTAVDVEALVRDMHDII-ARTLGPLIALQLRPADEAWQVLVDAPQLENALLNLCINA 689

Query: 716 IHFTPSGGQIIIST-------------THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
               P GG++ IS                 + + + L V+DTG GM+   + K  +PF  
Sbjct: 690 RDAMPDGGELTISLHNRTLDVAAAQQLELPAGDYLCLSVQDTGTGMSAEVMAKVFEPFFT 749

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
                   G+GTGLGL +       + G   I S    GT + +  P +    P D
Sbjct: 750 TKP----IGQGTGLGLSMIYGFTRQSGGHVRIDSEVGVGTTMALYLPRFTGVLPQD 801



 Score = 88.9 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 60/494 (12%), Positives = 129/494 (26%), Gaps = 43/494 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            D HG +   +E   + +G    +M+G  L        ++    + +      +  G   
Sbjct: 302 TDMHGRVTSWNEGARRILGWSEAEMLGQSLQRTFTPEDVERRQMLIEAAAALESGSGMDE 361

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
            W +  +      + + + +     E  GF    ++     +       ++ +++   L 
Sbjct: 362 RWHVRKSGERFWANGSLMVLREETGEAIGF--VKVLRDRTAERLASEALQKSERRLDALV 419

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY-PLLTSEES 267
                        +    Q      L      +   +   H DD  +        T+  S
Sbjct: 420 RASSQSIFSASADWRQLRQLVGDGVLSGAVSATPHWQEMVHPDDRARLADVLAQTTANRS 479

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV- 326
            +  +      +            L +  +   E+       +     +E      ET+ 
Sbjct: 480 GVDVEYRVLGADGRVGWTLMRAIPLLDEQERIAEWFGTSADITDKRVAEEQLRQLTETLE 539

Query: 327 ----DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVD----DIEIAGGLSTLLDAPKLSDN 378
               ++                  +   LT   + D       I+ GL  L    +    
Sbjct: 540 ERVRERSAALLLAEEKLRQSQKMEAVGQLTGGLAHDFNNLLTAISVGLELLQTRIEQGKY 599

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
           + +   +         A +     + ++R  +LA T +  E   +   ++    + P   
Sbjct: 600 DRLDRYVEMAQSSAARATALTQRLLAFSRRQTLAPTAVDVEALVRDMHDIIARTLGPLIA 659

Query: 439 DTRINKRKMEI---EVMQLCSIL--------EATSDGIAIINREGIILSTNR----AVSK 483
                  +      +  QL + L        +A  DG      E  I   NR    A ++
Sbjct: 660 LQLRPADEAWQVLVDAPQLENALLNLCINARDAMPDG-----GELTISLHNRTLDVAAAQ 714

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
               P  D L           +  VM        +                +   L L +
Sbjct: 715 QLELPAGDYLCLSVQDTGTGMSAEVMAKVFEPFFTTKPI-----------GQGTGLGLSM 763

Query: 544 IIKKLPFSSCYSLT 557
           I      S  +   
Sbjct: 764 IYGFTRQSGGHVRI 777



 Score = 88.9 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/388 (9%), Positives = 106/388 (27%), Gaps = 20/388 (5%)

Query: 79  IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLL 137
               +   +       ++  +    + IG+    +IG  L +         +   + ++ 
Sbjct: 161 EQAPMFMAFLSGPQHRVEFANPCYSRLIGHR--DVIGRPLAEALPDAAEQGHLLRLDEVY 218

Query: 138 KRQNTWYGKTTLWPIE----GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193
           +    +      + ++    G +    +DL   PI   +   SG   F            
Sbjct: 219 RSGRAFAANALPYNVQAVPGGPSERRLLDLVYQPIAGADGTISGI--FVQGLDITDRISL 276

Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF-----SQQSPPPHLRMKNKVSSLTEYYA 248
               +  + +   + +    ++ +  + +          +        +    SL   + 
Sbjct: 277 ERAMREAEVRNRQILDSVMDYAIIATDMHGRVTSWNEGARRILGWSEAEMLGQSLQRTFT 336

Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFH-TINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
            +D   +        + ES     E +H   +  ++        L+  + E+  ++    
Sbjct: 337 PEDVERRQMLIEAAAALESGSGMDERWHVRKSGERFWANGSLMVLREETGEAIGFVKVLR 396

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
             +      E    +   +D         S  ++F A+  +  L +      +  A   +
Sbjct: 397 DRTAERLASEALQKSERRLDALVRA----SSQSIFSASADWRQLRQLVGDGVLSGAVSAT 452

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
                    D+ A    +L ++             +  +      +        ++    
Sbjct: 453 PHWQEMVHPDDRARLADVLAQTTANRSGVDVEYRVLGADGRVGWTL-MRAIPLLDEQERI 511

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLC 455
               G   +  D R+ + ++      L 
Sbjct: 512 AEWFGTSADITDKRVAEEQLRQLTETLE 539



 Score = 44.6 bits (104), Expect = 0.063,   Method: Composition-based stats.
 Identities = 27/199 (13%), Positives = 61/199 (30%), Gaps = 18/199 (9%)

Query: 454 LCSILEAT---SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
           L + +E      + + ++  + +    N A + + G      L  P       +    + 
Sbjct: 25  LRNAIELMLGSPESMYVVWGDALTFFYNDAYAPILGPRHAQALGAPLRELWA-DAWEAVR 83

Query: 511 HYLTEILSLDLRQTLEKIT---LGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWK 565
             +    S    +  E           E+   +       L            ++++  K
Sbjct: 84  APIEAAFSGQASRFEELPIGMNRYGVPEQTWWTFSFSPIYLDDGQVGGAFCVTNEVTARK 143

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVS---H--EIRTPLTA-IIGFSEVIKNQRFGPLG 619
             + +L+   +   +       F+A +S   H  E   P  + +IG  +VI       L 
Sbjct: 144 LAQARLADEHERLIRLFEQAPMFMAFLSGPQHRVEFANPCYSRLIGHRDVIGRPLAEALP 203

Query: 620 NPRYIEY---ANYIDRSGN 635
           +     +    + + RSG 
Sbjct: 204 DAAEQGHLLRLDEVYRSGR 222


>gi|289937550|ref|YP_003482152.1| multi-sensor signal transduction histidine kinase [Natrialba
           magadii ATCC 43099]
 gi|289533241|gb|ADD07590.1| multi-sensor signal transduction histidine kinase [Natrialba
           magadii ATCC 43099]
          Length = 639

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 83/517 (16%), Positives = 197/517 (38%), Gaps = 50/517 (9%)

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEI 362
           S  N  + +    +  N   E   +    F+ +  +G+  Y N     L  +     +  
Sbjct: 164 SVANVLASAIANRKTRNELEEMHSRISDAFYSLNENGDFTYLNDRAKELIDFTDEGLVGN 223

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
              +    +    S         +   + T            W   N+            
Sbjct: 224 --HVWDTFEWAADSKLRTEYERAMETQEPTSFEFYYPEPLDTWFEVNAY----------- 270

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAV 481
             P     +    +  D ++          +   + E   + I I + E       + + 
Sbjct: 271 --PSETGLSVYFRDITDRKV-------REAEFRMVAENIGEIIWITDPETMAYQYISPSF 321

Query: 482 SKLFGYPVEDILRKP--FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
             ++G   + +   P  +  ++       +      +      + L++       ++++ 
Sbjct: 322 DDIWGVSRQRLYHDPSSYLQWVHPEDRERVRTNFNNL----PDEPLDETFRVVRPDDEIR 377

Query: 540 SLRIIIKKLPFSSCYSLTM---HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
            LR+  K++      +  +    D++E K  ++KL       E+ +     F    SH++
Sbjct: 378 WLRVRGKRVENDEGITRVIGIGQDLTERKAYEHKL-------EESNERLEQFAYAASHDL 430

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           + PL  +  + ++I+++    LG+    E+  +     + + ++++ LL+ S++++    
Sbjct: 431 QEPLRMVSSYLQLIESRYANELGDD-GEEFLEFAIDGADRMREMIDALLEYSRVDTQGDP 489

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716
           L  EPV LD  + +  + +Q+   E   ++ T    ++P I  D   ++Q+  N+LSNAI
Sbjct: 490 L--EPVDLDRLLEDVQTDLQIQLEESNAIVTTD---DLPWIKGDDSQLRQVFQNLLSNAI 544

Query: 717 HFTPSGG-QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
            ++  G  +I +  T+       + V D G+G+   + ++  + F ++    Q    GTG
Sbjct: 545 MYSGDGPPEIHVEATYQ-GRMWEVSVHDEGIGIDPEQQDRVFEVFHRLHG--QEEYSGTG 601

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
           +GL L + +++ + G+ ++ S P +G+      P  D
Sbjct: 602 IGLALCRRIIERHGGEIWVESEPGEGSTFSFTLPAAD 638



 Score = 47.3 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 34/468 (7%), Positives = 113/468 (24%), Gaps = 42/468 (8%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN-HIGDLLKRQNTWYG 145
           ++++ +G    +++   + I      ++G  + D  +              ++ Q     
Sbjct: 194 YSLNENGDFTYLNDRAKELIDFTDEGLVGNHVWDTFEWAADSKLRTEYERAMETQEPTSF 253

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +   +P     L    ++ A P        +G                 A  + + +   
Sbjct: 254 E-FYYP---EPLDTWFEVNAYPSE------TGLS--VYFRDITDRKVREAEFRMVAENIG 301

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
            +  I          +Y   S        R +      +       +  +  +       
Sbjct: 302 EIIWITD--PETMAYQYISPSFDDIWGVSRQRLYHDPSSYLQWVHPEDRERVRTNFNNLP 359

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
           +  L E       +      +     ++N+       +      +    ++     + E 
Sbjct: 360 DEPLDETFRVVRPDDEIRWLRVRGKRVENDEG-ITRVIGIGQDLTERKAYEHKLEESNER 418

Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
           +++       +          S+L L + +  +++   G            +      + 
Sbjct: 419 LEQFAYA-ASHDLQEPLRMVSSYLQLIESRYANELGDDG------------EEFLEFAID 465

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
                R  I A      +    +    +      +  Q    +             +   
Sbjct: 466 GADRMREMIDALLEYSRVDTQGDPLEPVDLDRLLEDVQTDLQIQLEESNAIVTTDDLPWI 525

Query: 446 KMEIEVMQLCSILEATSDGIAIINREG--IILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
           K +    QL  + +       + + +G   I      V   +   + ++      + ++ 
Sbjct: 526 KGDDS--QLRQVFQNLLSNAIMYSGDGPPEIH-----VEATYQGRMWEVSVHDEGIGIDP 578

Query: 504 NTPSVMNHYLTEILSLDLRQ----TLEKITLGSTKEEKLLSLRIIIKK 547
                +      +   +        L        +    + +     +
Sbjct: 579 EQQDRVFEVFHRLHGQEEYSGTGIGLALCRRIIERHGGEIWVESEPGE 626


>gi|223937199|ref|ZP_03629106.1| multi-sensor hybrid histidine kinase [bacterium Ellin514]
 gi|223894221|gb|EEF60675.1| multi-sensor hybrid histidine kinase [bacterium Ellin514]
          Length = 1309

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 110/782 (14%), Positives = 259/782 (33%), Gaps = 103/782 (13%)

Query: 89   IDAHGYLKEISEELPKTIGNY-AFKMIGMRLCDVSDILHIDPNN-HIGDLLKRQNTWYGK 146
            I A      ++    +  G     ++IG    DV+   + +     + +L +       +
Sbjct: 424  IQADDRYVYLNSAGLELFGTTDPSQIIGKSSFDVTHPDYHEALRQRLAELSQGNGVPLLE 483

Query: 147  TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF-GIVHVNRVDNDPRALGKRLDKKFS 205
              L  ++G+   V +++ A+P       + G      +V             ++     +
Sbjct: 484  EKLIRLDGS--VVDVEVTAIP-----FAYRGKPAIQVVVRNITERKRAEEALRKSQASLA 536

Query: 206  HL----------HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255
                         +++  H +   E Y IF  +     +  +  ++ +            
Sbjct: 537  RAQRIAHLGNWERDLETNHLTWSDETYRIFGFEPQQVEVTYEAFLARVHPEDRELVRRAS 596

Query: 256  TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
             E      S              N    T  +    + + S +   ++      ++    
Sbjct: 597  EETLRSCASH----SIDHRIVLPNGEIKTVNEQAEVVSDESGKPIRFVGTVLDITVRKRA 652

Query: 316  DEGENLTPETVDKCPIP--------FFVYSHGNLFYANPSFLLLT--KYKSVDDIEIAGG 365
            +          ++              V    NL   +   L +    +++V  I +   
Sbjct: 653  EVRSAAFARLGERLSSATTDVEAARIIVEVANNLLGWDACSLDICHAGHRTVTSILVMDL 712

Query: 366  LSTLLDA-PKLSDNNAIKPVMLYR-----------------------SDRTCIAASARLH 401
            +            N A  P++                           D++  +AS    
Sbjct: 713  IDGRKVDVAPRYRNEAPGPLLRRILESGAELIIRKPPFKSSAEFTQFGDKSRPSASLIFV 772

Query: 402  TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
             ++   +    ++   +       E++       +     + + + E E  +L +  +  
Sbjct: 773  PVRNGAKVIGVLSIQSYTPNAYTGEDLQTLQALADHCGGALERIRAEAENQKLAAFPQFN 832

Query: 462  SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
             + +  ++ EG +   N A  ++     + + ++  + FL Q T       + + L+   
Sbjct: 833  PNPVLELSAEGEVNYFNDAALQM----AKSLGKQHPSEFLPQETR----EIVRQCLATGE 884

Query: 522  RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE 581
                 +I + S       ++      +         + DI++ +  + +L  ++K+    
Sbjct: 885  SSLRHEIVMDSR------TISSSFFPIGAIGVVHCYVADITDRQNLEAQLRQSQKM---- 934

Query: 582  SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
                      ++H+    LT I G   ++      P       + A  I  +     ++ 
Sbjct: 935  -ESVGQLAGGIAHDFNNILTVIQGHGSLLGMVEHLP---KEAQDSAQQIILAAERAANLT 990

Query: 642  NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701
              LL  S+    +  +  + + L+E +S    +++     + I ++ ++A ++P++ AD 
Sbjct: 991  KQLLTFSR----RQVIQPKELDLNEVISNMTKMLR-RLLGEDITLQVNYAPSLPQVHADP 1045

Query: 702  RSVKQIALNILSNAIHFTPSGGQIIISTTH--------------TSNEEVILRVRDTGVG 747
              ++QI LN+  NA    P GG+++I ++                + E V + V+DTG G
Sbjct: 1046 GMMEQILLNLAVNARDAMPKGGRLLIYSSAMTLDQGQALRHPGARAGEYVCVTVKDTGTG 1105

Query: 748  MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
            +    + K   PF    +     G+GTGLGL     +V  + G   + ST  K T+ +I 
Sbjct: 1106 IAPEHVPKIFDPFFTTKD----VGKGTGLGLATVYGIVQQHKGWITVDSTVGKETIFQIF 1161

Query: 808  FP 809
             P
Sbjct: 1162 LP 1163



 Score =  151 bits (381), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 46/417 (11%), Positives = 124/417 (29%), Gaps = 21/417 (5%)

Query: 180 GFGIVHVNRVDNDP------RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH 233
           G  I    R   +         L +  + +F  +        +VE     I         
Sbjct: 132 GPAIQRALREAAERAEKLETEKLLRNSESRFRAIFHGAGTGIAVEDLNGRIVEANRALQL 191

Query: 234 -----LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288
                     +++     +A            L++ E      ++ F   +      +  
Sbjct: 192 MLGYTAGELQQITRKDFTHARDHREETQHIKRLISGESDFYQVEKRFVRKDGRIIWGRLT 251

Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY-ANPS 347
              +++ S +    ++     +     +E        V+         +   + +  NP+
Sbjct: 252 VSMVRDASGQPQFPIAMIEDITERQRAEEALLQYAAIVESSTDAIISTTFDGVIFSWNPA 311

Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
              L  Y + +    +  ++ L   P+  +    +   + R +R      A   T     
Sbjct: 312 AERLYGYSAAEANGRSISMTLL---PEKEEEFFARLEQVRRGER----IEAFETTRLRRD 364

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
           ++ + ++       +   + +  + I  +  + +  ++ +         ++E   D I +
Sbjct: 365 QSMVEVSITTSPIKDASGKVIGVSSIARDITERKRAEQALRESEENYRRLVELAPDAI-L 423

Query: 468 INREGIILSTNRAVSKLFG-YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
           I  +   +  N A  +LFG      I+ K        +    +   L E+   +    LE
Sbjct: 424 IQADDRYVYLNSAGLELFGTTDPSQIIGKSSFDVTHPDYHEALRQRLAELSQGNGVPLLE 483

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
           +  +        + +  I           + + +I+E K+ +  L  ++    +   
Sbjct: 484 EKLIRLDGSVVDVEVTAIPFAYRGKPAIQVVVRNITERKRAEEALRKSQASLARAQR 540



 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 41/392 (10%), Positives = 108/392 (27%), Gaps = 19/392 (4%)

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
           L+ +        +      ++ +    +   P  +     +       A K     T + 
Sbjct: 38  LEAELRRQEIAFQSCQVHGRKAFQEALKSFGPDVVLADYALPGFNGLEALKIWREHTAEL 97

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES--FEYLSHRNHPSLSAYFDE 317
           P ++   S   E               +   +    + +    E                
Sbjct: 98  PFISVSGSIGDENVMQLIQAGATDFVSKERLSRLGPAIQRALREAAERAEKLETEKLLRN 157

Query: 318 GENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
            E+              V   +G +  AN +  L+  Y + +               +  
Sbjct: 158 SESRFRAIFHGAGTGIAVEDLNGRIVEANRALQLMLGYTAGEL---QQITRKDFTHARDH 214

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
                    L   +        R           +          +   +      +  +
Sbjct: 215 REETQHIKRLISGESDFYQVEKRFVR---KDGRIIWGRLTVSMVRDASGQPQFPIAMIED 271

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             + +  +  +     Q  +I+E+++D I     +G+I S N A  +L+GY   +   + 
Sbjct: 272 ITERQRAEEALL----QYAAIVESSTDAIISTTFDGVIFSWNPAAERLYGYSAAEANGRS 327

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556
            ++ L           L ++   +  +     T    +++ ++ + I    +  +S   +
Sbjct: 328 ISMTLLPEKEEEFFARLEQVRRGERIEAF--ETTRLRRDQSMVEVSITTSPIKDASGKVI 385

Query: 557 ----TMHDISEWKQEKNKLSHAKKIAEKESSH 584
                  DI+E K+ +  L  +++   +    
Sbjct: 386 GVSSIARDITERKRAEQALRESEENYRRLVEL 417



 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 49/512 (9%), Positives = 147/512 (28%), Gaps = 30/512 (5%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH-IDPNNHIGDLLKRQ-NTWYGKT 147
           D +G + E +  L   +G  A ++  +   D +      +   HI  L+  + + +  + 
Sbjct: 177 DLNGRIVEANRALQLMLGYTAGELQQITRKDFTHARDHREETQHIKRLISGESDFYQVEK 236

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                +G  ++  + ++   +   + +        ++                  +++ +
Sbjct: 237 RFVRKDGRIIWGRLTVSM--VRDASGQPQ--FPIAMIEDITERQRAEEALL----QYAAI 288

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPP----PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
            E              IFS          +   +    S++     + +     +   + 
Sbjct: 289 VESSTDAIISTTFDGVIFSWNPAAERLYGYSAAEANGRSISMTLLPEKEEEFFARLEQVR 348

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
             E     +      + +          +++ S +     S     +     ++    + 
Sbjct: 349 RGERIEAFETTRLRRDQSMVEVSITTSPIKDASGKVIGVSSIARDITERKRAEQALRESE 408

Query: 324 E----TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
           E     V+  P    + +     Y N + L L        I            P   +  
Sbjct: 409 ENYRRLVELAPDAILIQADDRYVYLNSAGLELFGTTDPSQIIGKSSFDV--THPDYHEAL 466

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
             +   L + +   +        I+ +      +          +        +     +
Sbjct: 467 RQRLAELSQGNGVPL---LEEKLIRLDGS---VVDVEVTAIPFAYRGKPAIQVVVRNITE 520

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE--DILRKPF 497
            +  +  +      L         G    + E   L+ +    ++FG+  +  ++  + F
Sbjct: 521 RKRAEEALRKSQASLARAQRIAHLGNWERDLETNHLTWSDETYRIFGFEPQQVEVTYEAF 580

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYS 555
              +      ++     E L      +++   +    E K ++ +  +          + 
Sbjct: 581 LARVHPEDRELVRRASEETLRSCASHSIDHRIVLPNGEIKTVNEQAEVVSDESGKPIRFV 640

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
            T+ DI+  K+ + + +   ++ E+ SS  +D
Sbjct: 641 GTVLDITVRKRAEVRSAAFARLGERLSSATTD 672


>gi|163844116|ref|YP_001628520.1| histidine kinase [Brucella suis ATCC 23445]
 gi|163674839|gb|ABY38950.1| histidine kinase [Brucella suis ATCC 23445]
          Length = 859

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 131/724 (18%), Positives = 263/724 (36%), Gaps = 49/724 (6%)

Query: 110 AFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN--TWYGKTTLWPIEGTNLYVPIDLAALP 167
              ++G                  G  L+ Q+        +    +     + ++     
Sbjct: 150 RADVVGQLPDACGAPQDRPAFLAFGRWLRPQSVTALERAISTLREQARAFDLTVETVNGS 209

Query: 168 IYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ 227
           +   +   SG  GF +    +     +A    L+ +   L +  +    +          
Sbjct: 210 LLDVHGRTSG--GFAVA-CFQSLQGVQAERASLEAQNRELADRIELMRRLLDRIEQPAWL 266

Query: 228 QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287
           +     +   N   +     A+    + +E   L  ++     E++ F    + +     
Sbjct: 267 RDGNGRIEWVNLAYAQAVDMANASQ-VISEGRELFGAQARQRLERDRFAEPVVQEQLTAV 325

Query: 288 YFGTLQ--------NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG 339
             G  +          S             ++            ET+D+      ++   
Sbjct: 326 VHGDRRVFDVIDVSAESGSVGLGFDLTEVQAVRDELSRTLKSHAETLDQLSTAVAIFDPE 385

Query: 340 -NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398
             L + N +F+ L     V  +E     + + D  +       +P      D    A  A
Sbjct: 386 MKLQFFNQAFVKLWGL-DVAWLETRPSNTLIFDRLRAEGKLPEQPEWRKWKDSLLSAYCA 444

Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI- 457
                    E    M  +P  +  +   N    G      +    K ++E     L  + 
Sbjct: 445 V--------EPEEHMWHLPDTRTMRVVANPHPQGGVTWFFENMTEKFELEGRYNTLIKVQ 496

Query: 458 ---LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYL 513
              L+  ++ +A+   +G +  +N + + L+  P E +      ++  +       +   
Sbjct: 497 GETLDHLAEAVAVFGSDGRLRLSNPSFAALWSLPSEMVREGTHISIIAKLCNQRGGDGLW 556

Query: 514 TEILSLDLRQTLEKITL---GSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570
            + +S       ++          +  +LS  ++           LT  D+++  + +  
Sbjct: 557 EDFVSTVTGFLDQRDGRMGQVELSDGAILSFAVVPLP---KGQTMLTFIDVTDTVRVERA 613

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           L    +  E     K+DF+  VS+E+R+PLT IIGF+E+++   FG L N R +EY ++I
Sbjct: 614 LKEKNEALELADQIKNDFVQHVSYELRSPLTNIIGFTELLQTPAFGSL-NERQLEYLDHI 672

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
             S +++L IVND+LD++ +++G M L    VS+ EA+S A S V     +  I +    
Sbjct: 673 STSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEAISAAASRVSERLRDHNIGLDVDI 732

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
           A+++    AD   V+Q+  N+LSNA+++ P G  I++        +V+  V D G GM +
Sbjct: 733 ADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVLQVA-RDGADVVFAVHDDGHGMPS 791

Query: 751 YELEKAMKPFGQIPN-----SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
             L+   K F   PN        +          + K+ V+ + G+  I +   +GT + 
Sbjct: 792 EVLDTVFKRFQSYPNGGRRRGAGLGLA-------IVKSFVELHGGRVEIDTGEERGTTVI 844

Query: 806 IIFP 809
             FP
Sbjct: 845 CRFP 848


>gi|160891489|ref|ZP_02072492.1| hypothetical protein BACUNI_03940 [Bacteroides uniformis ATCC 8492]
 gi|317478405|ref|ZP_07937568.1| hsp90-like protein [Bacteroides sp. 4_1_36]
 gi|156858896|gb|EDO52327.1| hypothetical protein BACUNI_03940 [Bacteroides uniformis ATCC 8492]
 gi|316905441|gb|EFV27232.1| hsp90-like protein [Bacteroides sp. 4_1_36]
          Length = 388

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 83/382 (21%), Positives = 150/382 (39%), Gaps = 29/382 (7%)

Query: 454 LCSILEATSDGIAIINREGIILSTN-------------RAVSKLFGYPVEDILRKPFTVF 500
             +I+      + +INR+  +  TN             R V  +                
Sbjct: 8   FRAIMRNLHAYVLLINRDFTVFYTNYYDITGVVKPAETRRVGDILRCNNALSAAGGCGTH 67

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS----LRIIIKKLPFSSCYSL 556
                  V N      +       L  I      E +       +     ++    C  +
Sbjct: 68  DLCEHCPVRNAIENAFVVQKNFTDLAAILNLRDSEGRTTECNAYVSGEYMEIEDRDCMVI 127

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
           T+HDI+  KQ + +L  A++ AE     KS FLA +SHEIRTPL AI+GFSE++      
Sbjct: 128 TVHDITRLKQVEAELKLAREKAENADRSKSVFLANMSHEIRTPLNAIVGFSELLA----S 183

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
              +    ++   +  +  ++  ++ D+LD+SKIE+G +   F  V +++ + +     +
Sbjct: 184 ASTDEEKTQFLEIVQSNNEMLQQLIADILDLSKIEAGTLEFVFSDVDINQMMFDLEQQFR 243

Query: 677 LYANE--KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
           +   E    + I    +     +  D   + Q+  N ++NA+ FT  G  I +       
Sbjct: 244 MRVAELGSGVQIVREASEKEYTMHTDRNRLAQVVSNFMTNALKFTQEGS-ITLGFRPYEE 302

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
             +   V+DTG G+   +L    + F ++   +     GTGLGL + + +V    G+  +
Sbjct: 303 G-LYFYVKDTGTGIPQEKLPHVFERFVKLKQEKN----GTGLGLSICQTIVRKLGGEIGV 357

Query: 795 FSTPAKGTLIEIIFPLYDTSHP 816
            S    G+      P    + P
Sbjct: 358 ESEEGAGSTFWFTLPWEPATRP 379


>gi|88798530|ref|ZP_01114114.1| probable two-component sensor [Reinekea sp. MED297]
 gi|88778630|gb|EAR09821.1| probable two-component sensor [Reinekea sp. MED297]
          Length = 767

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 75/246 (30%), Positives = 138/246 (56%), Gaps = 9/246 (3%)

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
             L   ++  + ++  +S FLA++SHEIRTPL  ++G  +++   +     +    +Y  
Sbjct: 383 RVLREERQKQQLKAEAQSYFLAQISHEIRTPLNGVLGTVDLLDQTQL----DEEQKKYIE 438

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I  SG  +L++VND+LD S+IE+GKM +  E + + +     + L +  AN+K +  + 
Sbjct: 439 TIQSSGKSLLNLVNDVLDYSRIEAGKMTVVEEQIHIQDLFRHQVELFRAQANQKSLNFKL 498

Query: 689 SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EVILRVRDT 744
           +   N+P  IL+D + ++QIA N++SNAI FT  G Q+++S + T       + ++VRDT
Sbjct: 499 TIDPNVPEWILSDAQRIRQIATNLISNAIKFTDQG-QVVVSLSSTRRNGHPYLSIQVRDT 557

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G+ ++E+      + Q+   ++    GTGLGL +++ +VD   G   + S   +G+  
Sbjct: 558 GIGIASHEIAHLFDAYQQVDVGKRRVYGGTGLGLAISQQLVDLLGGTITVQSQQNQGSEF 617

Query: 805 EIIFPL 810
            +  PL
Sbjct: 618 TVQLPL 623


>gi|320160738|ref|YP_004173962.1| putative two-component sensor histidine kinase [Anaerolinea
           thermophila UNI-1]
 gi|319994591|dbj|BAJ63362.1| putative two-component sensor histidine kinase [Anaerolinea
           thermophila UNI-1]
          Length = 521

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 85/369 (23%), Positives = 164/369 (44%), Gaps = 30/369 (8%)

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
           E  +L ++L++ +DGI I+  +  I   N A+S++   P+E+I  +     +  + P   
Sbjct: 172 EKERLNALLDSLADGILILRPDHSIERCNPAISRMLNLPLENIRGRRHDEIIRWSKPPQG 231

Query: 510 NHYLTEILSLDLRQTLEK----ITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDI 561
              L +  S     T           S      L + I    L  S         T+ DI
Sbjct: 232 IT-LEQAESDGWPLTPHAYLYVEGDLSRSGLAPLPVGITYAPLISSENKLVNIIATVRDI 290

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           + ++Q +                KS F++ VSHE++TP+  I G+   ++ +        
Sbjct: 291 TRFRQAEE--------------LKSTFISIVSHELKTPVALIKGYVSTLRRED-ASWDPE 335

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
              +    I+   + +  ++ +LLD S++++G + L    +SL E        +Q   + 
Sbjct: 336 IIQDSLKVIEEEADRLAVMIENLLDASRLQAGGLTLKKSDLSLPELARRVAQRMQTQTSS 395

Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
            RI++   F ++ P +LAD   ++Q+  N++ NAI + P GG+I +        ++I+ V
Sbjct: 396 HRIVV--DFPDDFPIVLADEGRLQQVLTNLIGNAIKYAP-GGEIRVHGEAR-GNQIIVCV 451

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA-K 800
            D G G+   ++      F +       + +G GLGL L++A+++A+ G+ ++ S P  +
Sbjct: 452 SDQGPGINPEDVPHVFDRFYR-NPEAAKKTKGAGLGLYLSRAIIEAHGGRIWVDSHPGQQ 510

Query: 801 GTLIEIIFP 809
           G  I    P
Sbjct: 511 GARICFTLP 519


>gi|293410583|ref|ZP_06654159.1| sensory histidine kinase AtoS [Escherichia coli B354]
 gi|291471051|gb|EFF13535.1| sensory histidine kinase AtoS [Escherichia coli B354]
          Length = 608

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 83/371 (22%), Positives = 170/371 (45%), Gaps = 28/371 (7%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            + +         I+E  +DG+  I+R+G + + N A   + GY   +++ +P+++    
Sbjct: 254 AQALRETRTLNDLIIENAADGVIAIDRQGDVTTMNPAAEVITGYQRHELVGQPYSMLF-- 311

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMH 559
              +     + + L                ++ + + L +   ++  +        +   
Sbjct: 312 -DNTQFYSPVLDTLEHGTEHV-ALEISFPGRD-RTIELSVTTSRIHNTHGEMIGALVIFS 368

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           D++  K+ + +++ A+++A        + +A V+HE+R PLTAI G+ ++++ Q    + 
Sbjct: 369 DLTARKETQRRMAQAERLAT-----LGELMAGVAHEVRNPLTAIRGYVQILRQQTSDLI- 422

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
              + EY + + +  + +  ++  LL+ S+    +    ++ VSL+  V E + LVQ   
Sbjct: 423 ---HQEYLSVVLKEIDSINKVIQQLLEFSRPRHSQ----WQQVSLNALVEETLVLVQTAG 475

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
            + RI   +   N +  I AD   +KQ+ LNIL NA+    + G+I I T   S+ +  +
Sbjct: 476 VQARIDFISELDNELSPINADRELLKQVLLNILINAVQAISARGKIRIQTWQYSDSQQAI 535

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            + D G G+     +K   PF     S      GTGLGL L++ +++A+ G   + S P 
Sbjct: 536 SIEDNGCGIDLSLQKKIFDPFFTTKAS------GTGLGLALSQRIINAHQGDIRVASLPG 589

Query: 800 KGTLIEIIFPL 810
            G    +I P+
Sbjct: 590 YGATFTLILPI 600



 Score = 40.8 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/117 (10%), Positives = 37/117 (31%), Gaps = 6/117 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G +  ++       G    +++G     +    +    + + D L+          
Sbjct: 278 IDRQGDVTTMNPAAEVITGYQRHELVGQPYSMLF--DNTQFYSPVLDTLEHGTEHVALEI 335

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
            +P     + + +  +   I++ + E  G     I        + +    + ++  +
Sbjct: 336 SFPGRDRTIELSVTTS--RIHNTHGEMIGA--LVIFSDLTARKETQRRMAQAERLAT 388


>gi|313682906|ref|YP_004060644.1| integral membrane sensor hybrid histidine kinase [Sulfuricurvum
           kujiense DSM 16994]
 gi|313155766|gb|ADR34444.1| integral membrane sensor hybrid histidine kinase [Sulfuricurvum
           kujiense DSM 16994]
          Length = 722

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 74/248 (29%), Positives = 128/248 (51%), Gaps = 11/248 (4%)

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
               L  AK+ A   +  KS+FLA +SHEIRTPL ++IGFS++++ +    +  P+ ++Y
Sbjct: 231 MAEDLKMAKEEAVSANQLKSEFLANMSHEIRTPLNSVIGFSDLLEQE----VKEPKQVQY 286

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
            + I   G  +L ++N++LD+SKIESG M +   P+     + E +++      +K + +
Sbjct: 287 LHAIKNGGKALLSLINNILDLSKIESGHMKVELHPLHFKPFLREIMNMFIEPGKKKGLEV 346

Query: 687 RTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-----EVILR 740
                 N+P  I+AD   ++QI  N++SNAI FT  G  + +S   T ++     ++I  
Sbjct: 347 TYEIEKNLPEWIIADEIRIRQILFNLISNAIKFTEKGS-VRLSVLSTPSKNEGFVDLIFS 405

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           ++DTG+G++     K    F Q       +  GTGLGL + + +     G   I S   +
Sbjct: 406 IKDTGIGISPKNQIKIFDAFIQNDGQDSRQFGGTGLGLAICRKLAQLMKGDITIESQLGQ 465

Query: 801 GTLIEIIF 808
           G+      
Sbjct: 466 GSEFTFTI 473


>gi|312960110|ref|ZP_07774622.1| two-component system, NarL family, sensor histidine kinase EvgS
           [Pseudomonas fluorescens WH6]
 gi|311285604|gb|EFQ64173.1| two-component system, NarL family, sensor histidine kinase EvgS
           [Pseudomonas fluorescens WH6]
          Length = 1202

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 122/750 (16%), Positives = 259/750 (34%), Gaps = 82/750 (10%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR----------- 139
           A     E++       G    K     L  ++  L   P +   ++L+R           
Sbjct: 232 ADFSALEVNP-----FGFAFVKDNTRLLNIINAALVAVPASQQMEILRRWSAGGSGFLEA 286

Query: 140 -QNTWYGKTTLWPIEGTNLYVPIDLAALPI--YSRNREFSGFRGFGIVHVN--------- 187
            +         W  +   + V +    +P+  ++   +F G     +  ++         
Sbjct: 287 DRLRLSDSEQRWLQKHPRVRVAVLDKFVPLSFFNEQGQFEGLSAEVLSRISLRTGLKFDV 346

Query: 188 -RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY 246
            +  + PR + +    +   L  I       EK ++      +P   +        +T  
Sbjct: 347 EQGSSLPRQVDETSTGRVDMLAVITPSVERSEKIRFTRPYLSNPYVIVVPVGNDRLVTLD 406

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
                 +       L        P  E     N     +    GT+              
Sbjct: 407 NMPGKRLAFIGGNSLAAQIARDYPGIEFVDVENPETALEMVAKGTVDATIVSLISA---- 462

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY-ANPSFLLLTKYKSVDDIEIAGG 365
               + A           TV   P          + +  N S L L        + I+  
Sbjct: 463 --RYMIARHYRDRLRITSTVGAEPA--------RITFGVNRSQLELYSILDKALLSISPE 512

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
               L      +        L   +                    + +            
Sbjct: 513 EMDELTNHWRGEIIIEDSYWLRHRN--------------------VIIQGFGLAALLLLV 552

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
                  +          +R +  ++  +  +++ T   I + +R+G +++ N A   +F
Sbjct: 553 TLGWVFYLRNLIRKRAQAERALSDQMRFMGVLIDGTPHPIYVRDRQGRLMACNNAYLDVF 612

Query: 486 GYPVEDILRKPFTVFLE---QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
           G+ +ED++ K              S    YL  ++     Q  +++      +   +   
Sbjct: 613 GFKLEDVIGKTVVETDTGNLPQAQSFHADYL-RLMEQGEPQIHDRVLKVPNGDVLTIYQW 671

Query: 543 IIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
           ++  +              D+SE ++   ++  AK+ A+  +  K+     +SHEIRTP+
Sbjct: 672 MLPYRDGDEKVVGMIAGWVDVSERQRLLRQVQEAKEEADAANRAKT----TMSHEIRTPM 727

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
            A+IG  E+          +   ++       +   +L+++ D+LDI++IESG ++L   
Sbjct: 728 NAVIGMIELALKNAEQGRAD---LDALEVASVASRSMLELIGDILDIARIESGHLSLTLA 784

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFT 719
           P +  E ++    + +  A +K +++    +  I   +L D    KQ+  N+L NAI FT
Sbjct: 785 PANPHELLASVARVFEGLARDKGLVLHVELSPAIDCAVLIDPLRFKQVVSNVLGNAIKFT 844

Query: 720 PSGGQIII--STTHTSNE-EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
            +G Q+ +  S      +  + L V D+G+G++  + ++   PF Q  N +Q    G+GL
Sbjct: 845 QAG-QVRLGASGALADGQLHLRLWVEDSGIGISAEDQQRLFNPFIQGSNHEQSARSGSGL 903

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           GL +++++ +   G+ ++ S   KGT +++
Sbjct: 904 GLVISRSLCEMMGGQLHLSSMLGKGTRVDV 933



 Score = 44.2 bits (103), Expect = 0.082,   Method: Composition-based stats.
 Identities = 30/250 (12%), Positives = 59/250 (23%), Gaps = 23/250 (9%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP---NNHIGDLLKRQNTWYGK 146
           D  G L   +       G     +IG  + +            +     L+++       
Sbjct: 596 DRQGRLMACNNAYLDVFGFKLEDVIGKTVVETDTGNLPQAQSFHADYLRLMEQGEPQIHD 655

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
             L    G    + I    LP    + +  G              D     + L +    
Sbjct: 656 RVLKVPNGD--VLTIYQWMLPYRDGDEKVVGM--------IAGWVDVSERQRLLRQVQEA 705

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
             E    + +     ++I             N V  + E      +  + +   L  +  
Sbjct: 706 KEEADAANRAKTTMSHEI---------RTPMNAVIGMIELALKNAEQGRADLDALEVASV 756

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
           +S    E    I      +  +       +    E L+           D+G  L  E  
Sbjct: 757 ASRSMLELIGDILDIARIESGHLSLTLAPANPH-ELLASVARVFEGLARDKGLVLHVELS 815

Query: 327 DKCPIPFFVY 336
                   + 
Sbjct: 816 PAIDCAVLID 825


>gi|261253892|ref|ZP_05946465.1| BarA sensory histidine kinase [Vibrio orientalis CIP 102891]
 gi|260937283|gb|EEX93272.1| BarA sensory histidine kinase [Vibrio orientalis CIP 102891]
          Length = 929

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 82/341 (24%), Positives = 148/341 (43%), Gaps = 13/341 (3%)

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTE-ILSLDLRQTLEKITLGSTKEEKLLSLRI 543
            G       R    V    +    M   +    L + +   +             +++ +
Sbjct: 185 LGLSAVFAHRLMHDVTRPISHMKNMVDRIRRGHLDVRIEGKMHGELDSLKNGINSMAVSL 244

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
               +           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 245 SEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTP 304

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+  +              +Y   I+ S N +L+I+ND+LD SK+E+GK+ L  
Sbjct: 305 LNGVIGFTRQMLKTTLTN----SQTDYLQTIENSANNLLNIINDILDFSKLEAGKLALEN 360

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P     ++ E ++L    A+EK + +       +P  ++ D   ++Q+  N++ N+I F
Sbjct: 361 IPFDFQASLEEVVNLQATSAHEKGLELTLKIDPKVPAGLVGDPLRIQQVLTNLVGNSIKF 420

Query: 719 TPSGG---QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T  G     + + +    + E+   VRDTG+G++  +  +  + F Q   S   R  GTG
Sbjct: 421 TERGNIDISVELRSQKEDSVELQFMVRDTGIGISERQQSQLFQAFSQADASISRRYGGTG 480

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           LGL + + +V    G+  + S   +G+       L  T  P
Sbjct: 481 LGLVITQKLVSQMGGEISLTSRLHQGSTFWFTLRLSSTDMP 521


>gi|159901168|ref|YP_001547415.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159894207|gb|ABX07287.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 677

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 114/617 (18%), Positives = 223/617 (36%), Gaps = 51/617 (8%)

Query: 217 VEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFH 276
           +++       Q++       ++  + L          L      LL  +     E  +  
Sbjct: 82  LDQAIAQTIEQKTALLPSNDESAQAQLLVLPLLASQQLIGFLALLLPKKGRWSAEAIEAA 141

Query: 277 TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY 336
            +  +          L++ + +  + ++  N  + +             V K    +F  
Sbjct: 142 QLLAHNLALAISAVQLKDYTAKRNQEINTLNDIAATITSSLDPRQVYRLVVKKINEYFQV 201

Query: 337 SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA 396
             G+L   +P    L    +++  E       +     L          +   D      
Sbjct: 202 EAGSLLLLDPVTNELVFVMTLEAGEEKLAGVRVPPGQGLVGAAITTRQPVVVLDAQNDP- 260

Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN-----GIEPEDVDTRINKR------ 445
                  +     + ++  +P    N+    +            ED              
Sbjct: 261 RFYRRVSEDVGFVTRSVLCVPMLVKNREIGVIQLLNKLEGVFNTEDTQRLQAMANTVGVA 320

Query: 446 --------KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
                   ++     +L ++L +T+DGI +I+ + ++L+ N  + +LFG+       +  
Sbjct: 321 IDNANLFHEVSQNRNRLQALLNSTTDGILMIDPDDVVLTANPMLGELFGWE-----WRNI 375

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYS 555
                 +  + +      +  L   +T E   L      + +    +  +  F +     
Sbjct: 376 IGEAGSDILARIKEQSRVVNELPNSETCEIEVL--RPRTRYVRQEPLPVRNNFGNVIGTL 433

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
           +  HDI+E                + +  + D++  + H++R PLTAII    +++    
Sbjct: 434 IVFHDITE--------------EYQLAQIREDYMGMLVHDLRAPLTAIINGMTMVRRGFA 479

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
           GP+ N +  E  +  + S   ++ ++N LLDISK+E+G++ L+  P S  E V  A   +
Sbjct: 480 GPI-NDQQRELLDIANNSSQEMVGMINTLLDISKMEAGELVLNRAPCSAYEIVDRASERL 538

Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
              A    I I    A N+P I AD   + +I  N+L NAI FTP GG + I     ++ 
Sbjct: 539 INSARSVDISINLDMALNLPIIDADQDKIVRILQNLLDNAIKFTPVGGSVTIRVRQLTDN 598

Query: 736 E---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
           E   +   V D G G+      K    F Q+   +    +GTGLGL  AK   +A+ G+ 
Sbjct: 599 EKQTICWSVIDAGPGIPESYRAKIFDKFVQVAGQR----KGTGLGLAFAKLASEAHGGRI 654

Query: 793 YIFSTPAKGTLIEIIFP 809
           ++ S   +G+      P
Sbjct: 655 WVESVEGEGSTFSFTIP 671


>gi|332160708|ref|YP_004297285.1| phosphate regulon sensor protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325664938|gb|ADZ41582.1| phosphate regulon sensor protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 438

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 66/358 (18%), Positives = 134/358 (37%), Gaps = 35/358 (9%)

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
           +  S  E+  D + +   +G I   N    +L G+   +   +     L     S     
Sbjct: 99  RFRSGAESLPDAVIMTTIDGNIFWCNGLAQQLLGFRWPEDNGQHILNLLRYPEFSQYL-- 156

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572
                    +Q   +           +  R++           +   D+++ +Q +    
Sbjct: 157 --------QQQEFSRPLTLQLNNGYYVEFRVMPY---SEGQLLMVARDVTQMRQLEG--- 202

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF-GPLGNPRYIEYANYID 631
                       + +F A VSHE+RTPLT + G+ E++ +Q   GPL +    +    + 
Sbjct: 203 -----------ARRNFFANVSHELRTPLTVLQGYLEMMHDQELVGPLRD----KALGTMQ 247

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
                +  +V  LL +S+IE+       E V +   +      VQ  +N +   I     
Sbjct: 248 EQTKRMDGLVKQLLTLSRIEAAPNVDMNEQVDIPRMLKMLQHEVQALSNGRH-EITFRIN 306

Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751
             + ++  +   ++    N++ NA++ TP G +I +    T       +V D G G+   
Sbjct: 307 EQL-KVFGNEDQLRSAVSNLVYNAVNHTPDGTKIEVCWQRTPQG-AQFQVSDNGPGIGPE 364

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            + +  + F ++  ++  +  G+GLGL + K  +  +  +  + S    GT      P
Sbjct: 365 HVPRLTERFYRVDKARSRQTGGSGLGLAIVKHALSHHDARLDVMSEIGLGTRFIFTLP 422


>gi|320656477|gb|EFX24373.1| hybrid sensory histidine kinase BarA [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
          Length = 918

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 85/333 (25%), Positives = 153/333 (45%), Gaps = 17/333 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +FG+ +   +  P    +               L   +   +             +++ +
Sbjct: 193 IFGWRLMRDVTGPIRNMVNTVDR-----IRRGQLDSRVEGFMLGELDMLKNGINSMAMSL 247

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 248 AAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTP 307

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+ +       P       ++ N I+RS N +L I+ND+LD SK+E+GK+ L  
Sbjct: 308 LNGVIGFTRLTLKTELTPT----QRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILES 363

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P  L   + E ++L+   +++K + +  +  +++P  ++ D   ++QI  N++ NAI F
Sbjct: 364 IPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKF 423

Query: 719 TPSGGQ-IIISTTHTSNEEVILRV--RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T +G   I++     SN +V + V  RDTG+G+   +  +  + F Q   S   R  GTG
Sbjct: 424 TENGNIDILVEKRAQSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTG 483

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           LGL + + +V+   G     S P +G+      
Sbjct: 484 LGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516


>gi|206973556|ref|ZP_03234474.1| hypothetical protein BCH308197_2608 [Bacillus cereus H3081.97]
 gi|206747712|gb|EDZ59101.1| hypothetical protein BCH308197_2608 [Bacillus cereus H3081.97]
          Length = 595

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 89/508 (17%), Positives = 175/508 (34%), Gaps = 41/508 (8%)

Query: 314 YFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                E      +   P+    +  +G+    N    ++T Y + + I     L  L   
Sbjct: 107 LLTRKEEELHTILQNMPVMVDALDYNGDFVLWNRECEIVTGYTAEEVIGNPNALRLLYPD 166

Query: 373 PKLSDNNAIKPVML----YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
                    K +         +      +  + TI W+                      
Sbjct: 167 HNYRHEIQKKFLTRGKNFRDWEMRLTCKNGEIKTIMWSN-----------ISEQFPVSGF 215

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
               +  +    +  + K+  +  +L  I +A  D   +   +G I+         F  P
Sbjct: 216 SYWAVGVDITHLKAIEEKLIQQTSELELIFQALPDLCFLTEDDGTIIDYKAGSPTKFYVP 275

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            E  + K F   L  +        + ++        +E     +   +           L
Sbjct: 276 AEAFMGKKFYEVLPTSVAQKFQEAIFQVKEKGTNAIVEYPLTINESIDFF---EARCLPL 332

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                  + + DI+E K+ +  L+ +  +A           A V+HE+R PLT I GF +
Sbjct: 333 LHDK-IMIIVRDITERKKTEELLNKSDTLA-----AIGQLAAGVAHEVRNPLTVIKGFIQ 386

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
                    +      +Y + +      +  I+ + L I+K +     +  E  ++ +  
Sbjct: 387 ------LFQINKEDQEKYFDLMLSEIERIEAILQEFLSIAKTD----EISTEKKNIYQIF 436

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
              +SL+   A    I +     +    I      +KQ+ +NIL N+I   P GG+I I 
Sbjct: 437 KNVVSLMNTKAIMTNIQVELYTNSKDIIIECSENQLKQVFINILQNSIEAMPDGGEISIH 496

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                 + +I+ V D G+G+    +++  +PF         + +GTG+GL L+  +++++
Sbjct: 497 IKEIGKDGIIISVIDKGIGIPEERIKRLGEPFY------STKEKGTGIGLMLSYKIIESH 550

Query: 789 MGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
            G   I S    GT + I  P   +  P
Sbjct: 551 QGNISIMSEVGVGTTVTIYLPKIQSKKP 578


>gi|159901169|ref|YP_001547416.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159894208|gb|ABX07288.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 893

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 99/554 (17%), Positives = 209/554 (37%), Gaps = 54/554 (9%)

Query: 286 KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC----PIPFFVYSHGNL 341
           +     L+  S +            L        ++T   +D       +   +   G L
Sbjct: 351 ELVSTALRIKSGDLEGRSFVSEENELGTLATVLNDMTDRLLDLYRTSRQLGTELTLDGVL 410

Query: 342 FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM---------------- 385
                +   L     VD + +  G+   +    + +     P                  
Sbjct: 411 TQTTAAVQRLIPDSEVDALVVEQGVWHYVTTESVREIERPFPATSLETLAPMVTITENPA 470

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
           L  + R        +  ++  ++   ++                          T +   
Sbjct: 471 LDSALRPLAPNLQLVLPLRTQQQVIGSLLVKNDRALPPASSIREPLSAIASMTATAMQNA 530

Query: 446 KM----EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
            +    + E  +  +IL++ +DG+ +++ +G ++  N   + + G    D+L K F    
Sbjct: 531 VLYTTVQDEASRKQAILQSIADGVIVLDPDGKVILVNHTATAMLGASEADLLGKSFA--- 587

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF-SSCYSLTMHD 560
                        E+ +     T        T  +++L++     +     S   L +HD
Sbjct: 588 --EFQLTPLSGGAELFATPTATTF-----YETTSQRILTMNAAPVEREGLQSGEVLVLHD 640

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           ++E +                   K+DF+A +SHE+RTPLT+I G+++++     GPL +
Sbjct: 641 VTEER--------------AMDRAKTDFIATISHELRTPLTSICGYADLLLRGFVGPLTD 686

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
               ++ + I + G  +++++ +++ I+ IE+G M    E  SLDE +      +Q   +
Sbjct: 687 E-QTQFMSTIRQQGQSMVEVLQNVIVIASIEAGNMEPQIEQHSLDELLPPIAQALQKGFD 745

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
           +K++ +      N+P I+ D    K +   +L NA  +T +G  + +         + + 
Sbjct: 746 QKQLKLIIDLPENMPYIVVDRDHFKIMLTQLLENARRYTQTG-TVTVQAKAVEQ-RIQIA 803

Query: 741 VRDTGVGMTNYELEKAMKPFGQI--PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           V DTG G+ + + E+  + F +    +    +  G GLGL + K +V+ N GK ++ S  
Sbjct: 804 VIDTGPGIASQDFERLFERFQRGGEQSGLTSKERGIGLGLAITKQLVEQNNGKIWVESEQ 863

Query: 799 AKGTLIEIIFPLYD 812
             G+   + FPL  
Sbjct: 864 GVGSSFIMQFPLMQ 877



 Score = 39.6 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 14/108 (12%), Positives = 34/108 (31%), Gaps = 14/108 (12%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D  G +  ++      +G     ++G    +      + P +   +L          TT
Sbjct: 557 LDPDGKVILVNHTATAMLGASEADLLGKSFAE----FQLTPLSGGAELFATPTA----TT 608

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRAL 196
            +    T+  + + + A P+    RE        ++H    +      
Sbjct: 609 FYET--TSQRI-LTMNAAPV---EREGLQSGEVLVLHDVTEERAMDRA 650


>gi|320353531|ref|YP_004194870.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
            2032]
 gi|320122033|gb|ADW17579.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
            2032]
          Length = 1145

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 98/683 (14%), Positives = 200/683 (29%), Gaps = 43/683 (6%)

Query: 155  TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214
            + L   ++     + + +       G G + +     +     ++ +     L E+    
Sbjct: 335  SRLRHSMERHRSTVQAIDDGIIAADGQGRIELINPVAEALTGWRQEEALGRPLEEVFCLV 394

Query: 215  SSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQED 274
                 E       Q        + K   L      ++  +     P+     + L     
Sbjct: 395  EETTGELVRGSIAQVLGSGTAGERKGYHLLRARDGRERAVTGSVAPIHDDRNTPLGIVLA 454

Query: 275  FHTINLNQYTKKQYFGTLQNNSKESFEYLSHR--NHPSLSAYFDEGENLTPETVDKCPIP 332
            F      +  ++     L          L           A   E   +     ++    
Sbjct: 455  FRDQTEERQAQRLMQARLFLREYAFTHTLEEFFLRALKEVAALMESPLVFCRCPEQTVSS 514

Query: 333  FFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL-LDAPKLSDNNAIKPVMLYRS 389
              +             +         +D ++       L    P + D+  +        
Sbjct: 515  VVMRRPPSSRTTAFAQAGNGWVTVSGIDWMD--AWFDRLGTGQPPVVDDPGVSAGSASAV 572

Query: 390  DRTCIAASARLHTIQWNRENSLAMTF---IPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
                I        +    +                 +              V+ +  + +
Sbjct: 573  APWWIKGKVLAVPVLRAGKVLALFAVAEKSGHYSPQEHETLTRIAEFTWRLVERKQVEEE 632

Query: 447  MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
            +     Q  ++  +  D   + +  G I   N A   + GY  E++ R   +        
Sbjct: 633  LLASERQYRTLYRSMMDAFVVTDMHGHIRQCNDAYCAMLGYDREELRRMRVSDVTPAQWL 692

Query: 507  SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII----IKKLPFSSCYSLTMHDIS 562
            +  +  +   L       L        K+  L+ + +     I         S  + DIS
Sbjct: 693  AYEDEQVRNQLMHGGCSGL-YEKEYRRKDGTLIPVELRTFLLIDNDGQPEGMSAVVRDIS 751

Query: 563  EWKQEKNKLSHAKKIAEKESSHKS--DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
            E K+ + + +       +    +S       V+H+    L+ I+G++E+   +   P   
Sbjct: 752  ERKRAEQEEAKLLARLSQSQKMESVGQLAGGVAHDFNNMLSVILGYAELALRKMEVP--- 808

Query: 621  PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
                 Y   I ++G    +I   LL  ++    +  +    + L+E V   + +++    
Sbjct: 809  EPLHGYLEEIVKAGRRSSEITRQLLAFAR----QQTIAPRILDLNETVEGMLKMLRRLI- 863

Query: 681  EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-------- 732
             + +++R     ++  I  D   V Q+  N+  NA       G I I T           
Sbjct: 864  GEDVVLRWVPTPDLWPIRMDPTQVDQLLANLCVNARDAIAGVGNITIETGRATFDQAYCA 923

Query: 733  ------SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
                    + V+L V D G G+    L+K  +PF    +     G GTGLGL     +V 
Sbjct: 924  GRSGVMPGDFVLLAVSDNGSGIERDLLDKIFEPFFTTKD----VGRGTGLGLATVYGIVK 979

Query: 787  ANMGKFYIFSTPAKGTLIEIIFP 809
             N G   ++S P  GT   I  P
Sbjct: 980  QNEGFINVYSEPGVGTTFRIYLP 1002



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/400 (10%), Positives = 97/400 (24%), Gaps = 21/400 (5%)

Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF---SQQSPPPHLRMKNK 239
                   +   A   R   +             V+              PP +      
Sbjct: 81  TARFLATADARLAGQLRNRLRTVGAPGQYVEVLLVDAAGRVRLSTNGDSEPPGYAAALAL 140

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
                        V    + P +          +                   Q+  +  
Sbjct: 141 ALGRRHPVFSDLFVTPHCRSPRVALIAPFFVPNQRTGLPLGAVVLISDAVQCFQSWLQPW 200

Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDD 359
                      L    D    L  E++ +  +P      G    +  +   +        
Sbjct: 201 G--PPGATGEILLIRRDGSPLLLAESLPRLSVPLPSQMSGRHSDSLAAAA-MQGRIGAIR 257

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
                G+ +L     +             +              ++     L +  +   
Sbjct: 258 GRDQQGVDSLAVIVPVPGTEWRVIAKDAAAH--------VFAAWRFRAALLLLVFALLAG 309

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
                   M Q   +   +     + ++   + +  S ++A  DGI   + +G I   N 
Sbjct: 310 GFGGLCLFMQQYNKKVRYMALYDAESRLRHSMERHRSTVQAIDDGIIAADGQGRIELINP 369

Query: 480 AVSKLFGYPVEDILRKPFT---VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
               L G+  E+ L +P       +E+ T  ++   + ++L        +   L   ++ 
Sbjct: 370 VAEALTGWRQEEALGRPLEEVFCLVEETTGELVRGSIAQVLGSGTAGERKGYHLLRARDG 429

Query: 537 KLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLS 572
           +  ++   +  +           L   D +E +Q +  + 
Sbjct: 430 RERAVTGSVAPIHDDRNTPLGIVLAFRDQTEERQAQRLMQ 469



 Score = 81.2 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 36/492 (7%), Positives = 104/492 (21%), Gaps = 67/492 (13%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS----DILHIDPNNHIGDLLKRQNTWYG 145
           D  G ++ I+       G    + +G  L +V     +         I  +L        
Sbjct: 359 DGQGRIELINPVAEALTGWRQEEALGRPLEEVFCLVEETTGELVRGSIAQVLGSGTAGER 418

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           K              +  +  PI+       G            +   + L +       
Sbjct: 419 KGYHLLRARDGRERAVTGSVAPIHDDRNTPLGI--VLAFRDQTEERQAQRLMQARLFLRE 476

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP----- 260
           +          +   K      +SP    R   +  S                       
Sbjct: 477 YAFTHTLEEFFLRALKEVAALMESPLVFCRCPEQTVSSVVMRRPPSSRTTAFAQAGNGWV 536

Query: 261 -------------LLTSEESSLPEQEDFHTINLNQYTKKQ-------------------- 287
                         L + +  + +       + +                          
Sbjct: 537 TVSGIDWMDAWFDRLGTGQPPVVDDPGVSAGSASAVAPWWIKGKVLAVPVLRAGKVLALF 596

Query: 288 -------YFGTLQNNSKESFEYLSHR--NHPSLSAYFDEGENLTPETVDKCPIPFFVYSH 338
                  ++   ++ +       + R      +       E             F V   
Sbjct: 597 AVAEKSGHYSPQEHETLTRIAEFTWRLVERKQVEEELLASERQYRTLYRSMMDAFVVTDM 656

Query: 339 -GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397
            G++   N ++  +  Y   +++                ++       +         + 
Sbjct: 657 HGHIRQCNDAYCAMLGYDR-EELRRMRVSDVTPAQWLAYEDE-----QVRNQLMHGGCSG 710

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
                 +      + +    F   +   +    + +  +  + +  +++    + +L   
Sbjct: 711 LYEKEYRRKDGTLIPVELRTFLLIDNDGQPEGMSAVVRDISERKRAEQEEAKLLARLSQS 770

Query: 458 --LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
             +E+           G+    N  +S + GY    + +      L      ++      
Sbjct: 771 QKMESVGQL-----AGGVAHDFNNMLSVILGYAELALRKMEVPEPLHGYLEEIVKAGRRS 825

Query: 516 ILSLDLRQTLEK 527
                      +
Sbjct: 826 SEITRQLLAFAR 837



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 47/418 (11%), Positives = 108/418 (25%), Gaps = 38/418 (9%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNTWYGK 146
             D HG++++ ++     +G    ++  MR+ DV+    +   +      L+    +   +
Sbjct: 654  TDMHGHIRQCNDAYCAMLGYDREELRRMRVSDVTPAQWLAYEDEQVRNQLMHGGCSGLYE 713

Query: 147  TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                  +GT   +P++L    +   + +  G     +V              +L  + S 
Sbjct: 714  KEYRRKDGTL--IPVELRTFLLIDNDGQPEGMS--AVVRDISERKRAEQEEAKLLARLSQ 769

Query: 207  LHEIKKGHSSVEKEKYD--------IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
              +++          +D        +   +     + +   +    E    K     +E 
Sbjct: 770  SQKMESVGQLAGGVAHDFNNMLSVILGYAELALRKMEVPEPLHGYLEEIV-KAGRRSSEI 828

Query: 259  YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE---SFEYLSHRNHPSLSAYF 315
               L +             +N       +    L                      +   
Sbjct: 829  TRQLLAFARQQTIAPRILDLNETVEGMLKMLRRLIGEDVVLRWVPTPDLWPIRMDPTQVD 888

Query: 316  DEGENLTPETVDKCP-IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
                NL     D    +       G   +        +     D + +A   +       
Sbjct: 889  QLLANLCVNARDAIAGVGNITIETGRATFDQAYCAGRSGVMPGDFVLLAVSDNGSGIERD 948

Query: 375  LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
            L D             R      A ++ I    E  + +   P            Q G  
Sbjct: 949  LLDKIFEPFFTTKDVGRGTGLGLATVYGIVKQNEGFINVYSEPGVGTTFRIYLPRQIGTV 1008

Query: 435  PEDVDTRINKRKMEIEVMQLCSILEATSDG----IAIINREGIILSTNRAVSKLFGYP 488
             +  +                  + A   G    + ++  E  +L+ NR++ +  GY 
Sbjct: 1009 EDKPEIEA---------------ITAMPTGQGQTVLVVEDEEAMLTLNRSMLEYLGYT 1051


>gi|165938304|ref|ZP_02226862.1| sensor kinase protein RcsC [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166009958|ref|ZP_02230856.1| sensor kinase protein RcsC [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166211542|ref|ZP_02237577.1| sensor kinase protein RcsC [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167400347|ref|ZP_02305860.1| sensor kinase protein RcsC [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167419557|ref|ZP_02311310.1| sensor kinase protein RcsC [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|294503231|ref|YP_003567293.1| two component sensor kinase/response regulator protein RcsC
           [Yersinia pestis Z176003]
 gi|165913682|gb|EDR32301.1| sensor kinase protein RcsC [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165991354|gb|EDR43655.1| sensor kinase protein RcsC [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166207313|gb|EDR51793.1| sensor kinase protein RcsC [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166962298|gb|EDR58319.1| sensor kinase protein RcsC [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167050296|gb|EDR61704.1| sensor kinase protein RcsC [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|262361270|gb|ACY57991.1| two component sensor kinase/response regulator protein RcsC
           [Yersinia pestis D106004]
 gi|262365193|gb|ACY61750.1| two component sensor kinase/response regulator protein RcsC
           [Yersinia pestis D182038]
 gi|294353690|gb|ADE64031.1| two component sensor kinase/response regulator protein RcsC
           [Yersinia pestis Z176003]
          Length = 926

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 95/371 (25%), Positives = 160/371 (43%), Gaps = 29/371 (7%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
             ++E        I+ +   GI+I+   +G  + +N                  +   L 
Sbjct: 328 ALRLEEHEQFNRKIVASAPVGISILRISDGTNILSNELA-------------HNYISLLT 374

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
                     +T I+       ++ +    T     L +  +  +          + D+S
Sbjct: 375 NEDR----ERITRIICERQANFVDVM----TSNNNNLQISFVHSRYRNEDVAICVLVDVS 426

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
              + +  L      AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R
Sbjct: 427 ARVKMEESLQEMATAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPQGVDR 485

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                  ++ S  L+L I++D+LD SKIES ++ +     S  E ++   +       +K
Sbjct: 486 ---LVTAMNNSSGLLLKIISDILDFSKIESEQLKIEPSEFSTVEVITHITANYLPLVVKK 542

Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
           R+ +      ++PR I  D   ++Q+  N+L+NAI FT +G  II+         +  RV
Sbjct: 543 RLGLYCFIEPDVPRLIEGDPVRLQQVISNLLNNAIKFTDTG-CIILQVRVRD-CYLEFRV 600

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
           RDTGVG+ + E+ +   PF Q+    Q   +GTGLGL + + +V+   G   + S    G
Sbjct: 601 RDTGVGIDSREINQLFDPFFQVGTGVQRHFQGTGLGLAICEKLVNLMDGDVEVISELGMG 660

Query: 802 TLIEIIFPLYD 812
           ++  I  PLY 
Sbjct: 661 SIFAIRIPLYH 671


>gi|171320663|ref|ZP_02909680.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria MEX-5]
 gi|171094093|gb|EDT39184.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria MEX-5]
          Length = 662

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 91/416 (21%), Positives = 165/416 (39%), Gaps = 27/416 (6%)

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRIN------KRKMEIEVMQLCSILEATSDGI 465
            +     +              E +    R         R ++  +  L  +++A+ D I
Sbjct: 99  CVLVTAVKPLLANDRLRGAEDAEEDARTPRREPEPVSPARALDDTL--LRRVVDASPDAI 156

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
             ++    I S N A  +LFG      +    T+ +      +     +   +      L
Sbjct: 157 VGVDVARRITSWNPAARRLFGIDAAAAIGHDVTMLIAPRWLRLHPVPASFANAGAPAGPL 216

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQ-------EKNKLSHA 574
           +   L   ++            +  +       S+T+ +  E ++              A
Sbjct: 217 D--VLCLRRDGSRFPATFTASPIVDAQGNCTGLSMTLREARERRRCKQRDLRTLRGARDA 274

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
           +  A++ +  K + LA VSHE+RTPL  I G+  V+++       +    +  + IDRS 
Sbjct: 275 RVQADESNRMKDELLATVSHELRTPLNVIYGWVGVLRSGEGQGFAH----QAIDAIDRSA 330

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
             +  +V DLLD S + +G++ L   PV L   V EA+  +        + + T  A   
Sbjct: 331 RSLSRMVGDLLDASSLATGRVRLERTPVDLVRIVQEAVRELGETPEANGLELSTECAMPS 390

Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELE 754
             I AD   ++Q+  N+LSNAI FTP GG++ +S    +   V L V DTG G++   L 
Sbjct: 391 CVIAADAERLRQLLSNLLSNAIKFTPPGGRVKVSLNP-AGARVRLSVADTGQGISAERLP 449

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFP 809
                F +   +  +   G GLGL + + +   + G+    S    +GT + ++ P
Sbjct: 450 HLFDTFSRPEGAAALPKRGLGLGLSIVRNIARLHGGEVAAASEGAGRGTTVTVMLP 505



 Score = 60.0 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 49/556 (8%), Positives = 107/556 (19%), Gaps = 85/556 (15%)

Query: 37  EKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENT--FVFDPIPRTVRFTWNIDAHGY 94
           +     +    + +        +      +   + +                  +D    
Sbjct: 106 KPLLANDRLRGAEDAEEDARTPRREPEPVSPARALDDTLLRRVVDASPDAIV-GVDVARR 164

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL-WPIE 153
           +   +    +  G  A   IG  +  +     +  +                  L    +
Sbjct: 165 ITSWNPAARRLFGIDAAAAIGHDVTMLIAPRWLRLHPVPASFANAGAPAGPLDVLCLRRD 224

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
           G+    P    A PI       +G      +   R     +    R  +           
Sbjct: 225 GS--RFPATFTASPIVDAQGNCTGLS--MTLREARERRRCKQRDLRTLRGARDARVQADE 280

Query: 214 HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE 273
            + ++ E     S +   P   +   V  L             +              + 
Sbjct: 281 SNRMKDELLATVSHELRTPLNVIYGWVGVLRSGEGQGFAHQAIDAIDRSA--------RS 332

Query: 274 DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF 333
               +           G ++            +          E   L   T    P   
Sbjct: 333 LSRMVGDLLDASSLATGRVRLERTPVDLVRIVQEAVRELGETPEANGLELSTECAMPSCV 392

Query: 334 FVYSHGNLFYA----------------------NPSFLLL-TKYKSVDDIEIAGGLSTLL 370
                  L                         NP+   +            A  L  L 
Sbjct: 393 IAADAERLRQLLSNLLSNAIKFTPPGGRVKVSLNPAGARVRLSVADTGQGISAERLPHLF 452

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW--------NRENSLAMTFIPFEKAN 422
           D     +  A  P        + +   ARLH  +                M        +
Sbjct: 453 DTFSRPEGAAALPKRGLGLGLSIVRNIARLHGGEVAAASEGAGRGTTVTVMLPADLAADD 512

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
              + +  +G                                + +++ +    ++  A  
Sbjct: 513 PTGDPVLPSGASTAVALDGRR---------------------VLVVDDDATSRASLAAAL 551

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
           +  G  V              +T    +  L  +        L      +  +     L 
Sbjct: 552 ETLGAQV--------------STAQSGHDALDVVAQQHPSVVLSD---LAMPDGDGFWLL 594

Query: 543 IIIKKLPFSSCYSLTM 558
             I+ LP        +
Sbjct: 595 DHIRHLPEGGGRLPVV 610


>gi|78357413|ref|YP_388862.1| multi-sensor hybrid histidine kinase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78219818|gb|ABB39167.1| multi-sensor hybrid histidine kinase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 795

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 97/609 (15%), Positives = 198/609 (32%), Gaps = 52/609 (8%)

Query: 227 QQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL---TSEESSLPEQEDFHTINLNQY 283
            +     +  +  V+ +             E  P +    + +     Q      +    
Sbjct: 77  AEESWDIILAEPHVAGMPWQQILAAVRRVHEGIPFVLVMPAPDPQAAAQAVHDGADEVLL 136

Query: 284 TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLF 342
               + G      +        +     S   DE        V+   +  F     G L 
Sbjct: 137 PADWHTGAALQRLRSQAVLSRRQGARRRSRADDE--KEWRALVENTMVGMFRCRPWGELV 194

Query: 343 YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT 402
             NP+F  +  Y+S  ++  A         P +      + +   R++            
Sbjct: 195 QVNPAFAAIFGYRSPQELLNAHAGKK---GPHVPAAEIKELLPALRNEGLLTEYEMHAAR 251

Query: 403 IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
                 + + ++           E     G   +  + +  +  +     +     ++  
Sbjct: 252 ---PDGSGVWLSVNARTIRGAAGEISGIEGTVEDIGNRKSVENMIVRAKQEWEKTFDSVP 308

Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV-FLEQNTPSVMNHYLTEILSLDL 521
           D I +++ +  I   N A+  L G    +++ +       +  T   +   L  +     
Sbjct: 309 DIIVLLDSDLHIRRCNMALGTLLGRHPRELVGQDSRKTLFDGGTHGPVLDSLPALSRG-- 366

Query: 522 RQTLEKITLGSTKEEKLL----SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI 577
            Q+  +           L     L              L   DIS  KQ + +L  A+K+
Sbjct: 367 -QSHTEELHLPALGGHFLITFSPLFTGTGSDAEPEGTVLVARDISSRKQLEAQLRQAQKM 425

Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
                         ++H+    L  ++G++E+  ++     G+       + +  +G   
Sbjct: 426 -----EAIGTLAGGIAHDFNNILGVMMGYTEMSMDE--TTEGSAMQRR-LDAVLSAGRRA 477

Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697
            D+++ +L  S+ E         P++L   V E + L++       I I       +P +
Sbjct: 478 RDLIHQILTFSRHE----EPSRHPLNLVSPVKETVKLLRASLPA-NIAIDLRTD-TVPPV 531

Query: 698 LADLRSVKQIALNILSNAIHFTP-SGGQIIIS-------------TTHTSNEEVILRVRD 743
            A+L  ++Q+ +N+ +NA H     GG ++++              +  +   V LRV D
Sbjct: 532 NANLSQIQQVVMNLCANAAHAMRGPGGNLLLALDSTLLTAEEARPLSVPAGTYVRLRVSD 591

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TG G+    L     PF           EGTG+GL L   ++ A+ G   + S P +GT 
Sbjct: 592 TGHGIDPQILHSIFDPFFTTKKPD----EGTGMGLALVHGIITAHGGTVSVSSVPGQGTD 647

Query: 804 IEIIFPLYD 812
             I+ P  D
Sbjct: 648 FTILLPATD 656



 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/319 (8%), Positives = 74/319 (23%), Gaps = 15/319 (4%)

Query: 86  TWNIDAHGYLKEISEELPKTIGN-YAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144
            +     G L +++       G     +++          +       +   L+ +    
Sbjct: 184 MFRCRPWGELVQVNPAFAAIFGYRSPQELLNAHAGKKGPHVPAAEIKELLPALRNEGLLT 243

Query: 145 GKTTL-WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                    +G+   V + + A  I     E SG  G   V           +  R  ++
Sbjct: 244 EYEMHAARPDGSG--VWLSVNARTIRGAAGEISGIEG--TVEDIGNRKSVENMIVRAKQE 299

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPP---HLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
           +    +       +      I               +  V   +                
Sbjct: 300 WEKTFDSVPDIIVLLDSDLHIRRCNMALGTLLGRHPRELVGQDSRKTLFDGGTHGPVLDS 359

Query: 261 LLTSEESSLPEQEDFHTINLN--QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
           L          +E            T    F    ++++     L      S     +  
Sbjct: 360 LPALSRGQSHTEELHLPALGGHFLITFSPLFTGTGSDAEPEGTVL-VARDISSRKQLEAQ 418

Query: 319 ENLTP--ETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
                  E +         +   N+      +  ++  ++ +   +   L  +L A + +
Sbjct: 419 LRQAQKMEAIGTLAGGIA-HDFNNILGVMMGYTEMSMDETTEGSAMQRRLDAVLSAGRRA 477

Query: 377 DNNAIKPVMLYRSDRTCIA 395
            +   + +   R +     
Sbjct: 478 RDLIHQILTFSRHEEPSRH 496


>gi|17228780|ref|NP_485328.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17130632|dbj|BAB73242.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 603

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 86/261 (32%), Positives = 141/261 (54%), Gaps = 3/261 (1%)

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
            + +  I   +Q+   L  + +  E+ +  K+ FLA  SHEIRTPL++IIGF+ ++  Q 
Sbjct: 203 LVHLKKIQSLQQKSQNLGISNQELERTNQLKNQFLANTSHEIRTPLSSIIGFTHLLLAQG 262

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
           + P    R+ EY N I  SG  +L ++ND+LD+SKIE+ ++ + +E V++ E     ++L
Sbjct: 263 YDP-TRERHHEYLNIIQSSGKHLLALINDILDLSKIEANQLEVQWEKVNVPELCQNVLTL 321

Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
           ++  A  K + +      NI   +AD   +KQ+ LN+L NA+ FT  G  + +  T   +
Sbjct: 322 IKEKAANKGVKLSLELDPNIKTFVADPLRLKQMLLNLLFNALKFTNQG-TVGLKVTQQDS 380

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
             +   V DTG G++   L    +P+ QIPNS   + EGTGLGL + + + + + G   +
Sbjct: 381 -FIHFTVWDTGSGISPENLALLFQPYFQIPNSSVAQHEGTGLGLVVTRKLAEIHNGSVEV 439

Query: 795 FSTPAKGTLIEIIFPLYDTSH 815
            S  A G+   II PL     
Sbjct: 440 ESQVAHGSRFTIILPLQQNEQ 460


>gi|332308060|ref|YP_004435911.1| integral membrane sensor hybrid histidine kinase [Glaciecola
           agarilytica 4H-3-7+YE-5]
 gi|332175389|gb|AEE24643.1| integral membrane sensor hybrid histidine kinase [Glaciecola
           agarilytica 4H-3-7+YE-5]
          Length = 903

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 87/262 (33%), Positives = 139/262 (53%), Gaps = 11/262 (4%)

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           SE +    +L  AK  AE+ +  KS FLA +SHEIRTP+  IIG  +V+           
Sbjct: 370 SEQETLNAELVEAKHKAEQATVSKSMFLANMSHEIRTPMNGIIGLLDVVMKSELTST--- 426

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
              ++ N +  S  +++ ++ND+LD SK+E+GK+++     SL+   +  ++ +   A E
Sbjct: 427 -QRQHLNKVVYSSQILMSLINDILDFSKVEAGKLDIEQVEFSLNSVFANLLTNISARAQE 485

Query: 682 KRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT---SNEEV 737
           K + +R     NIP IL  D   + Q+ LN+ SNA+ FT +G  + IS T+    ++ ++
Sbjct: 486 KNLNVRFICDPNIPPILIGDPLRISQVLLNLSSNAVKFTRNGS-VTISVTYDIIPNSNKL 544

Query: 738 ILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
           +LR  V+DTG+GM+  +L+K  + F Q   S      GTGLGL + K +V    GK    
Sbjct: 545 LLRARVQDTGIGMSKEQLDKVFESFTQADGSTSRDFGGTGLGLTIVKQLVKLMGGKVTAE 604

Query: 796 STPAKGTLIEIIFPLYDTSHPH 817
           S    G+  E+ F L   S+  
Sbjct: 605 SKVNVGSTFEVSFTLISQSNEQ 626


>gi|318604581|emb|CBY26079.1| phosphate regulon sensor protein PhoR (SphS) [Yersinia
           enterocolitica subsp. palearctica Y11]
          Length = 438

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 66/358 (18%), Positives = 134/358 (37%), Gaps = 35/358 (9%)

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
           +  S  E+  D + +   +G I   N    +L G+   +   +     L     S     
Sbjct: 99  RFRSGAESLPDAVVMTTIDGNIFWCNGLAQQLLGFRWPEDNGQHILNLLRYPEFSQYL-- 156

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572
                    +Q   +           +  R++           +   D+++ +Q +    
Sbjct: 157 --------QQQEFSRPLTLQLNNGYYVEFRVMPY---SEGQLLMVARDVTQMRQLEG--- 202

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF-GPLGNPRYIEYANYID 631
                       + +F A VSHE+RTPLT + G+ E++ +Q   GPL +    +    + 
Sbjct: 203 -----------ARRNFFANVSHELRTPLTVLQGYLEMMHDQELVGPLRD----KALGTMQ 247

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
                +  +V  LL +S+IE+       E V +   +      VQ  +N +   I     
Sbjct: 248 EQTKRMDGLVKQLLTLSRIEAAPNVDMNEQVDIPRMLKMLQHEVQALSNGRH-EITFRIN 306

Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751
             + ++  +   ++    N++ NA++ TP G +I +    T       +V D G G+   
Sbjct: 307 EQL-KVFGNEDQLRSAVSNLVYNAVNHTPDGTKIEVCWQRTPQG-AQFQVSDNGPGIGPE 364

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            + +  + F ++  ++  +  G+GLGL + K  +  +  +  + S    GT      P
Sbjct: 365 HVPRLTERFYRVDKARSRQTGGSGLGLAIVKHALSHHDARLDVMSEIGLGTRFIFTLP 422


>gi|309790730|ref|ZP_07685279.1| multi-sensor signal transduction histidine kinase [Oscillochloris
           trichoides DG6]
 gi|308227221|gb|EFO80900.1| multi-sensor signal transduction histidine kinase [Oscillochloris
           trichoides DG6]
          Length = 546

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 103/540 (19%), Positives = 197/540 (36%), Gaps = 65/540 (12%)

Query: 325 TVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
            ++K      V +H   +   NP+   +  +++ + I                  + + P
Sbjct: 14  VIEKMSDGVVVLNHWQQVVDLNPAAEHIFGWQTQNMIG--------------HPFSEMYP 59

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
           +    S     A    L   Q                A+Q  E M    +  +       
Sbjct: 60  LWATISLPQIHAPEMCLEFRQGEGSKQRTFDVRVSAFADQHGELMGYLVVLRDISLYTQA 119

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG--YPVEDIL---RKPFT 498
           + +++        ++     G A       + +  RA   + G  Y    +L     P  
Sbjct: 120 QEELQARKALFEHLVSLARAGTAQPTLLATLRNMLRAARDICGAEYSSMILLREDGSPML 179

Query: 499 VFLEQNTPSVMNH--YLTEILSLDLRQTLEKI-------------TLGSTKEEKLLSLRI 543
            F         +    +  +L   L   + +                    +  +     
Sbjct: 180 SFFSSGDTEYEHDGRLIQHVLEHGLAGWVAREQQAACVADTWEDPRWWRDVQTDMFR-SA 238

Query: 544 IIKKLPFSSCYSLTM----HDISEWKQEKNKLSHAK---------------------KIA 578
           ++  +P        +     ++  ++    +L  A                        A
Sbjct: 239 LVIPIPDGERILGVITLGHREVGHFRSTHTELMQAAGDQIRLALRNAQMLENQRDLVDRA 298

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
           E  +  KS F+A VSHE+RTPL AI+G+S+ I +     L  P   E  + I  +G  +L
Sbjct: 299 EAANRAKSSFIANVSHELRTPLNAILGYSQ-ILSMDIKQLKRPDLEESIDQITTAGQHLL 357

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
           D++ND++D+S+IE G+M+L +  V L   +   I+  Q  A      +     N+I  ++
Sbjct: 358 DLINDVIDLSRIEGGQMSLSYSYVDLASFMQHLINANQNLAALNHNSLVLVCPNDIGLVM 417

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQ---IIISTTHTSNEEVILRVRDTGVGMTNYELEK 755
            D   V++I LN++SNA  FT  G     + +  +  ++  +++ VRDTG+G+   ++E 
Sbjct: 418 IDAPKVRRILLNLISNACKFTDHGQITCIVELHRSSEADTMLVIAVRDTGIGIHPDQIED 477

Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
               F Q  +S   R  G G+GL L++ +     G+  + S P  G+   +  P+   + 
Sbjct: 478 LFNQFIQADSSSTRRYGGLGMGLTLSRHLCQLMGGQISVESRPGYGSTFRVHVPVTQDAA 537



 Score = 37.7 bits (86), Expect = 9.5,   Method: Composition-based stats.
 Identities = 22/255 (8%), Positives = 65/255 (25%), Gaps = 28/255 (10%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEG 154
           + +++       G     MIG    ++   L    +       +    +         EG
Sbjct: 31  VVDLNPAAEHIFGWQTQNMIGHPFSEM-YPLWATISLPQIHAPEMCLEFRQG------EG 83

Query: 155 TNLY-VPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
           +      + ++A     ++ E  G+    ++    +    +   +     F HL  + + 
Sbjct: 84  SKQRTFDVRVSAFA--DQHGELMGY--LVVLRDISLYTQAQEELQARKALFEHLVSLARA 139

Query: 214 ----------HSSVEKEKYDIFSQQSPPPHLRMKNKVSSL------TEYYAHKDDVLKTE 257
                       ++ +   DI   +     L  ++    L         Y H   +++  
Sbjct: 140 GTAQPTLLATLRNMLRAARDICGAEYSSMILLREDGSPMLSFFSSGDTEYEHDGRLIQHV 199

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
               L    +   +         +    +     +  ++         R    ++    E
Sbjct: 200 LEHGLAGWVAREQQAACVADTWEDPRWWRDVQTDMFRSALVIPIPDGERILGVITLGHRE 259

Query: 318 GENLTPETVDKCPIP 332
             +      +     
Sbjct: 260 VGHFRSTHTELMQAA 274


>gi|303241735|ref|ZP_07328232.1| integral membrane sensor signal transduction histidine kinase
           [Acetivibrio cellulolyticus CD2]
 gi|302590736|gb|EFL60487.1| integral membrane sensor signal transduction histidine kinase
           [Acetivibrio cellulolyticus CD2]
          Length = 503

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 78/252 (30%), Positives = 126/252 (50%), Gaps = 7/252 (2%)

Query: 560 DIS---EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
           DIS   E  Q     +H     E     +  F+A VSHE+RTP+T+I GF E I +   G
Sbjct: 245 DISSEDEIGQLAESFNHMAVALENLEEMRRGFIANVSHELRTPMTSIHGFIEGILD---G 301

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
            +   R  EY + +      +  + NDLLD++++ESG+M L F    ++E +   I  ++
Sbjct: 302 TIPPEREREYLSIVSDETKRLSRLTNDLLDLARMESGEMKLTFVTFDINELIRRCIIKLE 361

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
                K I I  +F      + AD  S++++ LN+L NA+ F   GGQIII T  +   +
Sbjct: 362 NQIVTKNIQIEANFHEEAAHVYADKDSIERVVLNLLHNAVKFVQDGGQIIIETEMS-KGK 420

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           V++ V+D G G+ + E+      F +   S+     GTGLGL + K +++ +  +  + S
Sbjct: 421 VMVSVKDNGAGIDSEEIGLIWDRFYKSDKSRGKDKSGTGLGLAIVKNIINEHGQEIRVES 480

Query: 797 TPAKGTLIEIIF 808
              KGT+     
Sbjct: 481 EIGKGTVFYFTL 492


>gi|229003976|ref|ZP_04161781.1| hypothetical protein bmyco0002_9450 [Bacillus mycoides Rock1-4]
 gi|228757252|gb|EEM06492.1| hypothetical protein bmyco0002_9450 [Bacillus mycoides Rock1-4]
          Length = 542

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 93/498 (18%), Positives = 188/498 (37%), Gaps = 33/498 (6%)

Query: 316 DEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
              EN     +   PI    +   G++   N    L+T Y + + I     +  L     
Sbjct: 70  QHDENHLYSILQNMPIMINALDEKGSIIMWNRECELVTGYSADEIINNPTAIELLHPDKA 129

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
             D      +     +         ++    N E    M     +       N+   GI 
Sbjct: 130 YRDQLCNDLL----KNGNDFR-DWEVNITCKNGEIKTIMWSNILQSIPILGWNIGAIGI- 183

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
            +  + +  +  ++    +L  I +A  D   + + +G I          F   +E+ + 
Sbjct: 184 -DITNRKRMEENLKQTSAELELIFKAIPDLYFLSDLDGTIRKCKTNSISKFYVQIEEFIG 242

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554
           K     L  +        + +I    +   ++        ++++      +  L      
Sbjct: 243 KKIQEVLPVSITKQFEKAINQIQISAVPVLIDYPLQL---DDEIYYFEARLLPLFKDK-I 298

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
            + + DI+E K+    L  +  +            A ++HE+R PLT I GF ++++ + 
Sbjct: 299 MIIVRDITERKKTTELLKKSDTL-----KAVGQLAAGIAHEVRNPLTVIKGFMQLLQQEA 353

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     EY   I      +  I+ + L I+K       + FEP +L   +   ++L
Sbjct: 354 G------EDKEYFRLIFSEIRGIETILQEFLSIAKPN----VVVFEPKNLCTILDNVVAL 403

Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
           +   A  K I I  +       +      +KQ+  NIL N+I    +G +I I+    ++
Sbjct: 404 ISTQAIMKNIHITLNMDFENLLVECCEIQLKQVFFNILQNSIEAIQNGQEITINVKKHNS 463

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
            EV++ + D GVG+    +++  +PF         + +GTG+GL ++  +++++ GK  I
Sbjct: 464 TEVMICISDKGVGIPPERIKRLGEPFY------STKEKGTGVGLMISYQIIESHGGKINI 517

Query: 795 FSTPAKGTLIEIIFPLYD 812
            S   KGT + +  P+Y+
Sbjct: 518 RSQVGKGTTVIVFLPIYN 535


>gi|30261120|ref|NP_843497.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           Ames]
 gi|47526275|ref|YP_017624.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49183954|ref|YP_027206.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           Sterne]
 gi|65318399|ref|ZP_00391358.1| COG0642: Signal transduction histidine kinase [Bacillus anthracis
           str. A2012]
 gi|165871661|ref|ZP_02216306.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           A0488]
 gi|167635457|ref|ZP_02393770.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           A0442]
 gi|167638936|ref|ZP_02397210.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           A0193]
 gi|170687610|ref|ZP_02878826.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           A0465]
 gi|177653531|ref|ZP_02935705.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           A0174]
 gi|190566627|ref|ZP_03019544.1| sensor histidine kinase/response regulator [Bacillus anthracis
           Tsiankovskii-I]
 gi|227816148|ref|YP_002816157.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           CDC 684]
 gi|229600347|ref|YP_002865551.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           A0248]
 gi|254682823|ref|ZP_05146684.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           CNEVA-9066]
 gi|254725609|ref|ZP_05187391.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           A1055]
 gi|254734235|ref|ZP_05191948.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           Western North America USA6153]
 gi|254740116|ref|ZP_05197808.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           Kruger B]
 gi|254753457|ref|ZP_05205493.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           Vollum]
 gi|254758554|ref|ZP_05210581.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           Australia 94]
 gi|30254734|gb|AAP24983.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           Ames]
 gi|47501423|gb|AAT30099.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49177881|gb|AAT53257.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           Sterne]
 gi|164712562|gb|EDR18094.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           A0488]
 gi|167513066|gb|EDR88438.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           A0193]
 gi|167529075|gb|EDR91829.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           A0442]
 gi|170668423|gb|EDT19170.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           A0465]
 gi|172081335|gb|EDT66409.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           A0174]
 gi|190562179|gb|EDV16147.1| sensor histidine kinase/response regulator [Bacillus anthracis
           Tsiankovskii-I]
 gi|227006998|gb|ACP16741.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           CDC 684]
 gi|229264755|gb|ACQ46392.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           A0248]
          Length = 896

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 79/338 (23%), Positives = 148/338 (43%), Gaps = 18/338 (5%)

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            +D++++            +    +  +L      T E        + +   L++  ++L
Sbjct: 395 HQDLIQQTVDNLGLTIHSIMGRMRIQTLLHESQAMTEELQVQSEELQTQAEELQMQAEEL 454

Query: 549 PFSSCYSLTMHDISEWKQEKN-----KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
             ++    +  + +E K         +L        + S +KS+FLA +SHE+RTPL +I
Sbjct: 455 RTTNEQLESRTEEAEQKTADLQITKLELEEKASELLRSSKYKSEFLANMSHELRTPLNSI 514

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +  SE++K      L +    E A  I  SG  +L ++ND+LD+SK+E+GK+++ FE  +
Sbjct: 515 LLLSEMLKENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIFEATN 573

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSG 722
           + +  +         A +K +      ++ IP +   D + ++QI  N+LSNA  FT  G
Sbjct: 574 ISDMAASMHQNFLHIAAQKNVEFTVEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKG 633

Query: 723 GQ------IIISTTHTS-----NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
                   I  S           + + + V+DTG+G+   + +   + F Q   +   + 
Sbjct: 634 SVSLHFDSIETSNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGATIRKY 693

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            GTGLGL + K       G   + S   +G+   +  P
Sbjct: 694 GGTGLGLSICKEFARLLGGWITLESHVGEGSTFTVYIP 731


>gi|227114812|ref|ZP_03828468.1| hybrid sensory histidine kinase BarA [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 931

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 94/345 (27%), Positives = 155/345 (44%), Gaps = 19/345 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +F Y +   +  P    +       ++      L   +   +             +++ +
Sbjct: 193 IFAYRLMRDVTTPIRNMV-----DTVDRIRRGQLDSRVEGYMLGELDMLKNGINSMAMSL 247

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                          +D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 248 TAYHEEMQQNIDQATYDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTP 307

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+     Q      N    +Y   I+RS N +L+I+ND+LD SK+E+GK+ L  
Sbjct: 308 LNGVIGFT----RQTLKTPLNTTQTDYLLTIERSANNLLNIINDVLDFSKLEAGKLVLED 363

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P SL   + + + L+   A+EK + +  S  N++P   + D   ++QI  N+L NAI F
Sbjct: 364 IPFSLHSTLDDVVMLLAHTAHEKGLELTLSIQNDVPEQFVGDPLRIQQIITNLLGNAIKF 423

Query: 719 TPSGGQ-IIISTTHTSNEEVILRV--RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T  G   I +      + +V L V  RDTG+G+   +  +  + F Q   S   R  GTG
Sbjct: 424 TEQGNIDIRVEKRRQESHQVQLEVQIRDTGIGIAELQQSQLFQAFRQADTSISRRHGGTG 483

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTL--IEIIFPLYDTSHPHD 818
           LGL + + +V    G     S   KG+     I  PL   + P +
Sbjct: 484 LGLVITQRLVKEMGGDISFQSQLNKGSTFWFHITLPLNPHAMPTE 528


>gi|182412768|ref|YP_001817834.1| multi-sensor signal transduction histidine kinase [Opitutus terrae
           PB90-1]
 gi|177839982|gb|ACB74234.1| multi-sensor signal transduction histidine kinase [Opitutus terrae
           PB90-1]
          Length = 656

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 97/658 (14%), Positives = 213/658 (32%), Gaps = 40/658 (6%)

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV--SS 242
                  +P  +G+   +  +  HE ++G          +   +   P LR    V  S 
Sbjct: 7   RARSSLREPGTVGQGNPEARASCHESREGELPNAPVVIRLALARPAGPELRPAVHVKVSI 66

Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302
             +  A               +  ++    + F  ++      ++    L N        
Sbjct: 67  QRKIAAGFAVAALLLALITGAALRNAFRFDDTFRWVDHTHAVLREVEQVLANLLIVQSAG 126

Query: 303 LS--HRNHPSLSAYFDEGENLTPETVDKC-----PIPFFVYSHGNL----FYANPSFLLL 351
                     + A  ++        +++        P        L         +    
Sbjct: 127 RGFVLSGSEDVLAPLNQSRVELAAAMEQLRKLTADNPIQQERLRALAPVTERVVQAMEEQ 186

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411
            + +      I G    LL      D        +   ++  +A   R      +   + 
Sbjct: 187 LQQRRATATVIGGEAPVLLRTQADVDRAREIIRAIRFEEQRLLAERMRAAQRTAHGTVTA 246

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471
           ++                      +  +   +++ +         + +   D    ++++
Sbjct: 247 SVAATVVALLFVLASVWLV---RRDFGERVRSEQALRQSQQMFKRLFDNAPDATVQVDQQ 303

Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE--ILSLDLRQTLEKIT 529
           G I+  NR +  LFG+   ++  +     L     S  + +L    +        +    
Sbjct: 304 GRIVRANRQIEALFGWERGELSGRRIDELLPPRFASRHSAHLAAYFVAPRTRPMGVGLEL 363

Query: 530 LGSTKEEKLLSLRIIIKKLPFSSCY--SLTMHDISEWKQEKNK-------LSHAKKIAEK 580
            G  ++     + I++  L           + D++E K+   +       L       E 
Sbjct: 364 FGRRRDGSEFPVDIMLSPLETEQGMQALAVIRDVTERKRIDEQIRRLNLDLQLQNARLEL 423

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            ++    F   VSH++R PL  I GF+ ++     G L + +   +   I  +   +  +
Sbjct: 424 VNNELEAFSYSVSHDLRAPLRHIDGFASLLAKHAAGTL-DEKGQRFITIISDAARRMGRL 482

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILAD 700
           ++DLL  S++  G+  L    V  ++ +++ I   +L   ++   I       +P + AD
Sbjct: 483 IDDLLTFSRM--GRAQLETMTVDQNQLITDVIRDNEL---DRDQRIEWQLEP-LPAVRAD 536

Query: 701 LRSVKQIALNILSNAIHFTP--SGGQIIISTTHTSNEEV--ILRVRDTGVGMTNYELEKA 756
              ++Q+  N+L NA+ ++      +I +            +  VRD GVG       K 
Sbjct: 537 PAMLRQVWFNLLGNAVKYSARAEPPRIEVGWRSDPENSASQVFFVRDNGVGFDMRYAAKL 596

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
              F ++    +   EGTG+GL   + ++  + G+ +  STP  G       P+  TS
Sbjct: 597 FGVFQRLHA--ESEFEGTGIGLANVRRIIMRHGGRVWAESTPGAGATFFFSLPVNATS 652



 Score = 46.6 bits (109), Expect = 0.019,   Method: Composition-based stats.
 Identities = 28/252 (11%), Positives = 62/252 (24%), Gaps = 17/252 (6%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL----KRQNTW 143
            +D  G +   + ++    G    ++ G R+ ++        ++          + +   
Sbjct: 299 QVDQQGRIVRANRQIEALFGWERGELSGRRIDELLPPRFASRHSAHLAAYFVAPRTRPMG 358

Query: 144 YGKTTL-WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
            G        +G+   V I L+  P+ +      G +   ++             +RL  
Sbjct: 359 VGLELFGRRRDGSEFPVDIMLS--PLETEQ----GMQALAVIRDVTERKRIDEQIRRL-N 411

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA-----HKDDVLKTE 257
               L   +    + E E +           LR  +  +SL   +A      K     T 
Sbjct: 412 LDLQLQNARLELVNNELEAFSYSVSHDLRAPLRHIDGFASLLAKHAAGTLDEKGQRFITI 471

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
                      + +   F  +   Q                    L              
Sbjct: 472 ISDAARRMGRLIDDLLTFSRMGRAQLETMTVDQNQLITDVIRDNELDRDQRIEWQLEPLP 531

Query: 318 GENLTPETVDKC 329
                P  + + 
Sbjct: 532 AVRADPAMLRQV 543


>gi|153832942|ref|ZP_01985609.1| conserved hypothetical protein [Vibrio harveyi HY01]
 gi|148870865|gb|EDL69764.1| conserved hypothetical protein [Vibrio harveyi HY01]
          Length = 878

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 83/258 (32%), Positives = 128/258 (49%), Gaps = 11/258 (4%)

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
               + E  ++  ++   K+ A   +  KS FLA +SHEIRTPL  IIG +E++      
Sbjct: 351 VNRMMEEQNRQTEEILQTKESAISANRAKSVFLASMSHEIRTPLNGIIGMTEILSQSDL- 409

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
              +    E  + ID S + +L ++ND+LD+SKIESG + L      + E V +++ L Q
Sbjct: 410 ---SDHQKEVLSDIDTSSHTLLTLLNDILDLSKIESGHLQLSLIETDIREVVYQSVILFQ 466

Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
             A  KR+ +  +    IP RI  D   +KQI +N++SNA+ FT  G  I I   +  + 
Sbjct: 467 SKATSKRLELNINLDERIPARIKVDDHRIKQIIMNLVSNAVKFTEQGS-INIDVNYQEST 525

Query: 736 E-----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
                 +  RV DTGVG+   +L+   +PF Q       +  GTGLGL + + +V    G
Sbjct: 526 TQKSVFLTFRVSDTGVGIEQDKLDTIFEPFTQEDEGISRQFGGTGLGLAICRQLVAMMGG 585

Query: 791 KFYIFSTPAKGTLIEIIF 808
           +    S+   GT  E   
Sbjct: 586 QLTASSSKGIGTSFEFSI 603


>gi|242280141|ref|YP_002992270.1| cache sensor hybrid histidine kinase [Desulfovibrio salexigens DSM
           2638]
 gi|242123035|gb|ACS80731.1| Cache sensor hybrid histidine kinase [Desulfovibrio salexigens DSM
           2638]
          Length = 755

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 94/407 (23%), Positives = 170/407 (41%), Gaps = 56/407 (13%)

Query: 452 MQLCSILEATSDG----IAIINREGIILST--------------------N-------RA 480
            +L + L   + G      I++  G +++                     N       + 
Sbjct: 219 AELSTFLNTLTIGQSGKAFIVDTNGNVVAFPDLEALKQTTQNNKIRLSKINELSDEICQK 278

Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL-----EKITLGSTKE 535
             K      + I +KP     E +     N   T   +      +     E   LG  K+
Sbjct: 279 AYKSLSVHPDQIPQKPVFTTFEHHGAR-YNAVFTPFKNSHWPWIIGLYIPEDDYLGDIKK 337

Query: 536 EKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
           +  LS+      +  S      +           KL+ AK+ A   +  KS FLA +SHE
Sbjct: 338 DYRLSVMTAALAILLSGLIGWVV---------ARKLNAAKENAVAANHAKSQFLAVMSHE 388

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           IRTP+  I+G ++++K+            +Y   +D +G  +L ++ND+LD+SK+E+G +
Sbjct: 389 IRTPMNVILGTTDLLKDSH----PRDDQKKYIKLLDDAGEGLLALINDILDMSKVEAGLL 444

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSN 714
           +L     +  + + ++ S+ +  A++K I +       +P  +  D   VKQI LN++ N
Sbjct: 445 DLESIDFNPSKIMRQSCSVFEHSASQKGIELACRVDGKLPGLVQGDPVRVKQILLNLIGN 504

Query: 715 AIHFTPSGGQIIISTTHTS----NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           A+ FT +GG + +   +      N E+   ++DTG G+         + F Q  +S    
Sbjct: 505 AVKFTDTGG-VYVQAGYKQLTNNNVELKFEIQDTGPGIPKDRQHAIFEHFTQADSSITRE 563

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
            +GTGLGL ++K + D   GK  + S+P  G+       + +    H
Sbjct: 564 YQGTGLGLSISKKLCDMMNGKITVSSSPGSGSTFTFTITMKEVKDSH 610


>gi|120612634|ref|YP_972312.1| multi-sensor hybrid histidine kinase [Acidovorax citrulli AAC00-1]
 gi|120591098|gb|ABM34538.1| multi-sensor hybrid histidine kinase [Acidovorax citrulli AAC00-1]
          Length = 1159

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 109/683 (15%), Positives = 223/683 (32%), Gaps = 65/683 (9%)

Query: 141 NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNR-VDNDPRALGKR 199
           +   G+             P + A   + +      G  G     + R     P A  K 
Sbjct: 70  DAETGQRGYLLAGEPRYLGPYETAEASLTTELERLRGLVGDSPRQLRRYEQLAPLARQKM 129

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
            +   +    +     +          + +      +  ++ +       +   +  +  
Sbjct: 130 SELHETIQLRLSGQADAALSVVRTDRGRATMDAIRSLVREMIAAEREELEERRAMWEDSA 189

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
                             + +   T   +    +     S                + G 
Sbjct: 190 RFAAYFTWGSSLLLLVFILGVAAMTAADHRAKAREAWVRSGLMGLSDEVRGDLRLDELGP 249

Query: 320 NLTPETVDKCPIPF----FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
            +      +             HG         L  T  + +   E   G       P  
Sbjct: 250 RVLAYLARRLGARVGAAYVSDGHGTFRRFGAYALSGTGPERIAVGEGLVGQVAQTLQPVH 309

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
           + +     + +         A   +     N      +     E     P       +  
Sbjct: 310 ARHVPASHLEVQSGVGHSTPAELVVLPAVHNG-----VVHAVIELGFFRPVQPIDMDMLS 364

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL------FGYPV 489
              +      +  I+  QL ++L+ T                 R   +L           
Sbjct: 365 RASEQLAVAVRSAIDRSQLEALLDETQ----------------RQAEELQAQQEELRVSN 408

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
           E++ ++   +   Q         L +  +    QT +                       
Sbjct: 409 EELEQQSRVLQESQAQMEAQQTELEQSNAQLEEQTQQLEYQKQ----------------- 451

Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                        +  + ++ LS   +  E+ S +KS+FLA +SHE+RTPL + +  +++
Sbjct: 452 -------------QLLRAQDALSDKARDLEQASQYKSEFLANMSHELRTPLNSSLILAKL 498

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           + + + G L   +   YA  I  +GN +L+++ND+LD++KIE+G+  +  EPV++  AV 
Sbjct: 499 LADNKGGNLTEEQVR-YAETIHGAGNDLLNLINDILDLAKIEAGQATVEIEPVNVARAVQ 557

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
             +  ++  A EK +         +P +   D + + QI  N+LSNAI FT  G ++ + 
Sbjct: 558 SIVEPLRPLAREKNLAFSAVVEPGVPDVLRTDAQRLGQILKNLLSNAIKFTERG-EVALR 616

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                +  V   VRDTG+G+  ++ +   + F Q   S   +  GTGLGL +++ +    
Sbjct: 617 VAAQPDGRVAFSVRDTGIGIPEHQQKLIFEAFRQADGSTHRKYGGTGLGLSISRDLAQLL 676

Query: 789 MGKFYIFSTPAKGTLIEIIFPLY 811
            G   + ST  +G++  ++ P++
Sbjct: 677 GGSVSVQSTSGQGSVFTLVLPVH 699


>gi|332703323|ref|ZP_08423411.1| signal transduction histidine kinase, nitrogen specific, NtrB
            [Desulfovibrio africanus str. Walvis Bay]
 gi|332553472|gb|EGJ50516.1| signal transduction histidine kinase, nitrogen specific, NtrB
            [Desulfovibrio africanus str. Walvis Bay]
          Length = 1157

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 110/705 (15%), Positives = 222/705 (31%), Gaps = 70/705 (9%)

Query: 146  KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
            K   W I  +   +   L  L +  R R+++  R    ++   +  D          K  
Sbjct: 355  KPVFWTIMASLGVLTAVLFFLALNIRQRKYAERRLKDQLYFMELLMDTIPTPIYFRSKSG 414

Query: 206  HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
               +  K          D  +   P                 +   D     +  +   E
Sbjct: 415  AYTDFNKAFQRWFGTDRDALNATLPKEIKAAGGSRLRNPATLSDAADKELLARPGVRVYE 474

Query: 266  ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
            +         H + +++ T +   G ++      +++    +           E      
Sbjct: 475  QVLESIDGKRHNVLMHKATYRNASGEVEGLVGVLYDF---TDRHKAEEDLRRAEEKYRSI 531

Query: 326  VDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGG----------LSTLLDAPK 374
             +   +  F V + G+   ANP+   +  Y +   +  +G           L  L     
Sbjct: 532  FENSALGIFRVTAEGDWLDANPALAHMLGYATPVALMTSGRTILADLHCAELEALAVTAA 591

Query: 375  LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
                 A     L R+D   +A  A L +I     +S  +                  GI 
Sbjct: 592  DRPGAAAFECRLTRADGQELAVRAYLRSITSEDGSSTRL-----------------EGIV 634

Query: 435  PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP-VEDIL 493
             +    R  +R +      L  +L+     +   +++   +  N++ +  FG    ++I+
Sbjct: 635  EDVTSRRKAERDLRDSQKMLRMVLDNIPQLVFWKDKDLRYMGANKSFADFFGLSDQDEII 694

Query: 494  RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553
             K     L +   ++    L   +  + R              +++ + +    L     
Sbjct: 695  GKTNRDLLPRVIDALAAERLDAEVMHENRSCPRTPLELKMANGEMVIVELTKLPLHDYEG 754

Query: 554  YSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE- 608
              +    T  D++     + +L  ++K+          F++ ++H+    LT II  +E 
Sbjct: 755  RVIGVLSTAEDVTRKVSLERQLLQSQKM-----EAIGTFVSGIAHDFNNILTTIINSAEL 809

Query: 609  VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
             + +                    +      +V+ +   S+         F P  +   V
Sbjct: 810  ALLDLPEESEPAEDVRRAL----NAAQQGSHLVSQIHTYSRPTREG----FLPTEVAATV 861

Query: 669  SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS-GGQIII 727
             +A+ L++       I +R     ++   LAD   ++Q+ +N+ +NA       GG I +
Sbjct: 862  QQALGLIRASLPG-NIRLREDVEPSLGLCLADPTQLRQVVMNLCTNAFQALRETGGVIEV 920

Query: 728  S-------------TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
                                E + L V D G G+      K   PF    +     GEGT
Sbjct: 921  GLHRVELQPERADLLALAPGEFLCLSVSDNGPGIPPSIASKIFYPFFTTKSM----GEGT 976

Query: 775  GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT-SHPHD 818
            GLGL + + +V  + G   + S P   T  EI  P  D  + P +
Sbjct: 977  GLGLAVVQGIVKGHKGAISLSSEPWVKTRFEIFLPYEDEGAQPKE 1021



 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 51/352 (14%), Positives = 99/352 (28%), Gaps = 21/352 (5%)

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
           +    E Y   +DVL     P       S+   +      L +        +L   +   
Sbjct: 313 LERTDEQYYFDNDVLARHGIPHDRLPAGSIIINQPKPFYELEKPVFWTIMASLGVLTAVL 372

Query: 300 FE-YLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSV 357
           F   L+ R          +        +D  P P  F    G     N +F         
Sbjct: 373 FFLALNIRQRKYAERRLKDQLYFMELLMDTIPTPIYFRSKSGAYTDFNKAFQRWFGTDRD 432

Query: 358 DDIE------IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411
                      A G S L +   LSD    +   L                ++       
Sbjct: 433 ALNATLPKEIKAAGGSRLRNPATLSDAADKE---LLARPG----VRVYEQVLESIDGKRH 485

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471
            +        N   E     G+  +  D    +  +     +  SI E ++ GI  +  E
Sbjct: 486 NVLMHKATYRNASGEVEGLVGVLYDFTDRHKAEEDLRRAEEKYRSIFENSALGIFRVTAE 545

Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
           G  L  N A++ + GY     L       L     + +      + + D           
Sbjct: 546 GDWLDANPALAHMLGYATPVALMTSGRTILADLHCAELEAL--AVTAADRPGAAAFECRL 603

Query: 532 STKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAE 579
           +  + + L++R  ++ +             + D++  ++ +  L  ++K+  
Sbjct: 604 TRADGQELAVRAYLRSITSEDGSSTRLEGIVEDVTSRRKAERDLRDSQKMLR 655



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/384 (7%), Positives = 82/384 (21%), Gaps = 33/384 (8%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMI---GMRLCDVSDILHIDPNNHIGDLLKRQNT 142
            + + A G   + +  L   +G      +   G  +        ++          R   
Sbjct: 539 IFRVTAEGDWLDANPALAHMLGYATPVALMTSGRTILADLHCAELEALAVTAA--DRPGA 596

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
              +  L   +G  L V   L ++     +      R  GIV             +   K
Sbjct: 597 AAFECRLTRADGQELAVRAYLRSITSEDGSST----RLEGIVEDVTSRRKAERDLRDSQK 652

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSP---PPHLRMKNKVSSLT----EYYAHKDDVLK 255
               + +        + +                L  ++++   T              +
Sbjct: 653 MLRMVLDNIPQLVFWKDKDLRYMGANKSFADFFGLSDQDEIIGKTNRDLLPRVIDALAAE 712

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
                ++    S      +    N      +     L +        LS     +     
Sbjct: 713 RLDAEVMHENRSCPRTPLELKMANGEMVIVELTKLPLHDYEGRVIGVLSTAEDVTRKVSL 772

Query: 316 DEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
           +     + +           +  G     N     +     +  ++            + 
Sbjct: 773 ERQLLQSQKM-----EAIGTFVSGIAHDFNNILTTIINSAELALLD---------LPEES 818

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
                ++  +      +     +++HT           T +                   
Sbjct: 819 EPAEDVRRALNAAQQGS--HLVSQIHTYSRPTREGFLPTEVAATVQQALGLIRASLPGNI 876

Query: 436 EDVDTRINKRKM-EIEVMQLCSIL 458
              +       +   +  QL  ++
Sbjct: 877 RLREDVEPSLGLCLADPTQLRQVV 900


>gi|291287961|ref|YP_003504777.1| multi-sensor hybrid histidine kinase [Denitrovibrio acetiphilus DSM
           12809]
 gi|290885121|gb|ADD68821.1| multi-sensor hybrid histidine kinase [Denitrovibrio acetiphilus DSM
           12809]
          Length = 1005

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 85/266 (31%), Positives = 133/266 (50%), Gaps = 15/266 (5%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +       L+ A+  AE+ S  KS FLA +SHEIRTPL  IIG ++++ +         +
Sbjct: 251 QLLNTNKDLAKARDAAEQASKAKSSFLANMSHEIRTPLNGIIGLTKLMLDLELSN----K 306

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             +Y   IDRS   +L I+ND+LD+SKIE+GK+ +       +        L  +   EK
Sbjct: 307 QKDYMRKIDRSAKALLGILNDVLDLSKIEAGKLRIDNHDFVFESVFKSIDDLFTIKIEEK 366

Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS----NEEV 737
            + +       IP+ +  D   +KQ+ +N++SNA+ FT  G +I I    T     +  +
Sbjct: 367 GLELFFEIDPEIPQHLTGDPLRIKQVLINLVSNAVKFTDEG-EIHIKAEVTEITDSDISI 425

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
           +  VRDTGVG+   ELEK    F Q+  +   R EGTGLGL + K +V    G   + S 
Sbjct: 426 LFSVRDTGVGIPANELEKIFTAFTQVDETSTRRYEGTGLGLAITKNLVSMMGGTVTVESD 485

Query: 798 PAKGTLIEIIF----PL-YDTSHPHD 818
              G++         P+   +S+P++
Sbjct: 486 INMGSIFSFKLTLQIPVNAVSSNPNN 511


>gi|284167539|ref|YP_003405817.1| multi-sensor signal transduction histidine kinase [Haloterrigena
           turkmenica DSM 5511]
 gi|284017194|gb|ADB63144.1| multi-sensor signal transduction histidine kinase [Haloterrigena
           turkmenica DSM 5511]
          Length = 683

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 90/640 (14%), Positives = 211/640 (32%), Gaps = 39/640 (6%)

Query: 180 GFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK 239
           G     +  V     +    L  +     E+      V+    + +   +     R    
Sbjct: 65  GIAEQTLEDVSIAAESPRAELTTEAVRTRELTVRRDLVDDPPCEEWRNHALEHDYRTCAA 124

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
           +  + E   +    L T++     + E     +            +             +
Sbjct: 125 IPLVYEETLYGVLQLATDRPHGFGTSEREALTELGVTIAYALDDAESPANTDRDEREGAA 184

Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVD 358
            E         +    ++   L    +   P   + +       +AN + L +      +
Sbjct: 185 EEM------TEVPIESEQKRRLYETIISSTPDLVYAFDLDYRFIFANDALLEMWGQTYDE 238

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
            I       TL +      +  +    + R   T       +      R   +   +I  
Sbjct: 239 SIGN-----TLRENGYEPWHAEMHEREIDRVVETKEPIRGEVAFEHVERGRRIY-DYIFA 292

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
              +   E     G   +  + +  +  ++    +  +++ A+SD +  ++ +       
Sbjct: 293 PVLDDEGEVEIIAGTTRDITERKEAEEALQKSKERFRALVTASSDVVYRMSPDW------ 346

Query: 479 RAVSKLFG----YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
             + +L G       ++        ++  +    +   + E +    + T E        
Sbjct: 347 SEMHELEGKEFIADTQESTSDWLDKYIHPDDQERVTAAIDEAI--RSKSTFELEHQVEQV 404

Query: 535 EEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
           +  L         +         +     DI+E K  + +L       ++ +     F  
Sbjct: 405 DGSLGWTFSRAVPMLDEDGDIVEWIGMASDITERKAYERELEQTNAQLKRSNRELKRFAH 464

Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650
             SH+++ PL  +  + + +  QR+G   +    E+  +     + +  +V+ LL+ S++
Sbjct: 465 AASHDLQEPLRMVSSYLQ-LLEQRYGDDLDADATEFIEFAVDGADRMRAMVDALLEYSQV 523

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710
            + +    FE V  +  + +A   +Q+   E+   I +     +P +  D R + Q+  N
Sbjct: 524 STREN--DFETVDCEAVLEQATENLQMAIEEREASITSD---ELPTVSGDERQLIQLFQN 578

Query: 711 ILSNAIHFT-PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
           +L NAI +   +   + +S     + E +  VRD G+G+   E +     F ++      
Sbjct: 579 LLDNAITYAGDAPPTVHVSAE-RGDGEWLFSVRDNGIGIDPEETDDIFAVFNRLHAPD-- 635

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
              GTG+GL + K +V  + G+ ++ S P +GT      P
Sbjct: 636 EYGGTGIGLAICKRIVTIHDGRIWVESEPGEGTTFFFTIP 675



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/356 (9%), Positives = 93/356 (26%), Gaps = 16/356 (4%)

Query: 41  KENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISE 100
            E+P +   ++     +    V      + +       I  T    +  D        ++
Sbjct: 169 AESPANTDRDEREGAAEEMTEVP--IESEQKRRLYETIISSTPDLVYAFDLDYRFIFAND 226

Query: 101 ELPKTIGNYAFKMIGMRLCDVSDILHIDP--NNHIGDLLKRQNTWYGKTTLWPIEGTNLY 158
            L +  G    + IG  L +              I  +++ +    G+     +E     
Sbjct: 227 ALLEMWGQTYDESIGNTLRENGYEPWHAEMHEREIDRVVETKEPIRGEVAFEHVE-RGRR 285

Query: 159 VPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVE 218
           +   + A P+     E     G           +     ++  ++F  L           
Sbjct: 286 IYDYIFA-PVLDDEGEVEIIAG--TTRDITERKEAEEALQKSKERFRALVTASSDVVYRM 342

Query: 219 KEKYDIFSQQSPPPHLRMKNKVSS--LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFH 276
              +    +      +    + +S  L +Y    D    T         +S+   +    
Sbjct: 343 SPDWSEMHELEGKEFIADTQESTSDWLDKYIHPDDQERVTAAIDEAIRSKSTFELEHQVE 402

Query: 277 TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP------ 330
            ++ +          + +   +  E++   +  +    ++     T   + +        
Sbjct: 403 QVDGSLGWTFSRAVPMLDEDGDIVEWIGMASDITERKAYERELEQTNAQLKRSNRELKRF 462

Query: 331 IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
                +          S+L L + +  DD++                  A+   +L
Sbjct: 463 AHAASHDLQEPLRMVSSYLQLLEQRYGDDLDADATEFIEFAVDGADRMRAMVDALL 518


>gi|53714664|ref|YP_100656.1| hypothetical protein BF3378 [Bacteroides fragilis YCH46]
 gi|52217529|dbj|BAD50122.1| conserved hypothetical protein [Bacteroides fragilis YCH46]
          Length = 626

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 97/521 (18%), Positives = 188/521 (36%), Gaps = 42/521 (8%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFF---VYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365
              ++  D+      + +D  P P     +       Y N    L +     D +     
Sbjct: 122 RKSASADDDYRRFLFDILDNLPFPIMVKDIQEQFKYTYWNKESELQSGISRKDAVG--FS 179

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
              +    +      I   ++       I   A    +  + +    +       + +  
Sbjct: 180 DVDIFGEERGKQYRKIDEDLVRAG----IPYKAEERYVTADGKVHDTLVMKSIISSGKLG 235

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLC-------SILEATSDGIAIINREGIILSTN 478
           + +       E    ++ +R++     QL          L +   G+  I+R  ++    
Sbjct: 236 KWL--LVARWEITQLKMYERELLAAKEQLEGAVCKQKLALRSIDFGLIYIDRNYLVQW-- 291

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNT------PSVMNHYLTEILSLDLRQTLEKITLGS 532
               +  G     +  + +T                      E +               
Sbjct: 292 ----EETGNIKNLVSGRHYTPGTVCYRTTGQGTQPCGKCAFREAIGTGKIVRHITHVDHV 347

Query: 533 TKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
             E     +              L   DI+E  + +  L  AK+ AE+ +  KS FLA +
Sbjct: 348 DFEITATPVYDDTGNEIIGG--LLRFEDITEKLKVERMLQEAKEKAEESNRLKSAFLANM 405

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHEIRTPL AIIGFS++I              EY   +  +  L+L +++D+LD+SKIE+
Sbjct: 406 SHEIRTPLNAIIGFSDLICQTD----DVEEKEEYIRIVTSNNELLLQLIDDILDLSKIEA 461

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712
           G M+  + P  ++E + +    +Q       + I  +       I  D   + Q+ +N++
Sbjct: 462 GTMDFSYAPTDINELMEDICLQMQQKNQRPEVQIMFTEKEPGCVINTDRLRLSQVIMNLM 521

Query: 713 SNAIHFTPSGGQIIISTTH-TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           +NA+ FT  G  I +        +E+   V+DTG+G+   +  K  + F ++        
Sbjct: 522 NNAMKFTSEGS-ITLGYRLTRQKDELYFFVKDTGIGIPADQAGKVFERFVKLNTF----V 576

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
           +GTGLGL + + +++   G   + +   KG+      P+ +
Sbjct: 577 KGTGLGLAICRVIIERLGGTIGVETREGKGSCFWFRLPVRE 617


>gi|163940454|ref|YP_001645338.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           weihenstephanensis KBAB4]
 gi|163862651|gb|ABY43710.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           weihenstephanensis KBAB4]
          Length = 595

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 89/497 (17%), Positives = 173/497 (34%), Gaps = 33/497 (6%)

Query: 314 YFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                E      +   P+    +  +G+    N    ++T Y + + I     L  L   
Sbjct: 107 LLSRKEEELHTILQNMPVMVDALDYNGDFVLWNRECEIVTGYTAEEIIGNPNALQLLYPD 166

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
                    K +   +          RL     N E    M     ++            
Sbjct: 167 HNYRHQIQNKFLTRGK---NFRDWEMRLT--CKNGEIKTIMWSNISKQFPVTG--FSYWA 219

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
           +  +    +  + +++ +  +L  I +A  D   +   +G I+         F  P E  
Sbjct: 220 VGVDITHLKAIEGQLKQQTSELELIFKALPDLCFLTEDDGTIIDYKAGSPTKFYVPAEAF 279

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
           + K F   L  +        + ++        +E           +         L    
Sbjct: 280 MGKKFYEILPSSVAQQFQEAIRQLKEEGKNVIVEYPLTI---NGSIDFFEARCLPLLQDK 336

Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
              + + DI+E K+ +  L+ +  +A           A V+HE+R PLT I GF +    
Sbjct: 337 -IMIIVRDITERKKAEELLNKSDTLA-----AIGQLAAGVAHEVRNPLTVIKGFIQ---- 386

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
                +      +Y + +      +  I+ + L I+K +     ++ E  ++ +     +
Sbjct: 387 --LFQINKEDQEKYFDLMLSEIERIEAILQEFLSIAKTD----EINTEKKNIYQIFKNVV 440

Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
           SL+   A    I +     +    I      +KQ+ +NIL N+I     GG+I I     
Sbjct: 441 SLINTKAIMTNIQVELFTDSKEIIIECSENQLKQVFINILQNSIEAMLDGGKISIHIKEI 500

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
             + VI+ V D G+G+    +++  +PF         + +GTG+GL L+  +++ + G  
Sbjct: 501 HKKGVIISVIDEGIGIPEERIKRLGEPFY------STKEKGTGIGLMLSYKIIEGHQGTI 554

Query: 793 YIFSTPAKGTLIEIIFP 809
            I S    GT + I  P
Sbjct: 555 SIMSEVGVGTTVTIYLP 571


>gi|146309327|ref|YP_001189792.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp]
 gi|145577528|gb|ABP87060.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp]
          Length = 965

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 101/614 (16%), Positives = 203/614 (33%), Gaps = 38/614 (6%)

Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270
            +   + E E             L  +   S++          L    + +L+       
Sbjct: 120 AEQLHAFETELRTEGYPNFRVRPLGQRALYSAIRFIEPFAGRNLAAFGFDMLSEPVRQAA 179

Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330
                 +       +           +      +    P       E            P
Sbjct: 180 MLSAARSGQSRLSGRVTLVQETHGKVQPGLLLYTPVYQPGQPLDTPEQRLAALRGFAYSP 239

Query: 331 IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390
                     +  A    L    Y S D       ++ L  +     +  +         
Sbjct: 240 YR-THDLMHGILGARQRDLEFALYASPD----TSTVNLLYSSSDSILDTPVDTQRQLDMF 294

Query: 391 RTCIAASAR-----LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
                 +       L        + LA+             ++     + + +  RI ++
Sbjct: 295 GQQWHLNFYYAPGFLDAAHRGEGSLLALGICISLLLFFLISSLSLRREQVQQLAERITEQ 354

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR-----KPFTVF 500
            +     +L   L+ ++DG   I+ +      +    ++ GYP +           +   
Sbjct: 355 -LHRSEERLALALKGSNDGWWDIDVQAGSFFASARGWQMLGYPEQGPPGFADDPLSWEQL 413

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SL 556
           +           + ++L   +             + ++L + +       +S Y    + 
Sbjct: 414 VHPEDLPATRAQVKQVLREGI-SNFTLECRLLCADGQVLPILLRGYIQRDASGYPLRITG 472

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
           T  D SE K+ +                KS+F++ VSHE+RTPLTAI G   +I     G
Sbjct: 473 TAMDQSEVKRIE--------------RLKSEFVSTVSHELRTPLTAIAGSLGLINGGALG 518

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
            +      +  +    +   +  ++NDLLD+ K+E+GKM    +P  L   + EA++  Q
Sbjct: 519 VVP-EGMRQMLSIAQANSQRLSHLINDLLDMDKLEAGKMQFDLQPCELAGQLEEALASNQ 577

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
            YA ++++ +R        R+  D   ++Q+  N +SNA+ ++P  G++++         
Sbjct: 578 AYAAQRQVQLRL-LDCPPVRVRVDNMRLQQVLANFISNAVKYSPPAGEVLLRAERRDT-R 635

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           V + V D G G+     ++    F Q   S      GTGLGL ++K +++   G+    S
Sbjct: 636 VRVEVSDQGSGIAAAFRDRIFAKFSQADASDSREKGGTGLGLAISKELIERMGGQIGFDS 695

Query: 797 TPAKGTLIEIIFPL 810
              +G+      PL
Sbjct: 696 VVGQGSTFWFELPL 709


>gi|229177538|ref|ZP_04304916.1| hypothetical protein bcere0005_9050 [Bacillus cereus 172560W]
 gi|228605900|gb|EEK63343.1| hypothetical protein bcere0005_9050 [Bacillus cereus 172560W]
          Length = 896

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 80/338 (23%), Positives = 149/338 (44%), Gaps = 18/338 (5%)

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            +D++++            +    +  +L      T E        + +   L++  ++L
Sbjct: 395 HQDLIQQTVDNLGLTIHSIMGRMRIQTLLHESQAMTEELQVQSEELQTQAEELQMQAEEL 454

Query: 549 PFSSCYSLTMHDISEWKQEK-----NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
             ++    +  + +E K        ++L        + S +KS+FLA +SHE+RTPL +I
Sbjct: 455 RTTNEQLESRTEEAEQKTADLQITKSELEEKASELLRSSKYKSEFLANMSHELRTPLNSI 514

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +  SE++K      L +    E A  I  SG  +L ++ND+LD+SK+E+GK+++ FE  +
Sbjct: 515 LLLSEMLKENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIFEATN 573

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSG 722
           + +  +         A +K +      ++ IP +   D + ++QI  N+LSNA  FT  G
Sbjct: 574 ISDMAASMHQNFLHIAAQKNVEFTIKDSDTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKG 633

Query: 723 GQ------IIISTTHTS-----NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
                   I IS           + + + V+DTG+G+   + +   + F Q   +   + 
Sbjct: 634 SVSLHFDSIEISNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGATIRKY 693

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            GTGLGL + K       G   + S    G+   +  P
Sbjct: 694 GGTGLGLSICKEFARLLGGWITLESHVGAGSTFTVYIP 731


>gi|167754622|ref|ZP_02426749.1| hypothetical protein CLORAM_00124 [Clostridium ramosum DSM 1402]
 gi|237733742|ref|ZP_04564223.1| signal transduction protein kinase [Mollicutes bacterium D7]
 gi|167705454|gb|EDS20033.1| hypothetical protein CLORAM_00124 [Clostridium ramosum DSM 1402]
 gi|229383080|gb|EEO33171.1| signal transduction protein kinase [Coprobacillus sp. D7]
          Length = 405

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 78/362 (21%), Positives = 162/362 (44%), Gaps = 39/362 (10%)

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
           L S+++  +  +  +N+EG I+ TN++    F    + +  K +         +++    
Sbjct: 77  LNSLIKTMNLPMIFVNKEGTIIFTNQSFRDAFKI--KHLRGKYYKDIFTDQLLNIV---- 130

Query: 514 TEILSLDLRQTLEKIT-LGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNK 570
                 D     E+        +E+   +                +   D+++ K+ +  
Sbjct: 131 ------DQSYIFERKFSTAVCIDERYYQIETTPVFRDDVAFDGSIILFTDVTQVKEIE-- 182

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
                         +  F + +SHE++TP++AIIG  E+++ +  G      + E+   +
Sbjct: 183 ------------KMQKQFFSDISHELKTPMSAIIGSVEILQKE--GIKNKDTFNEFMGIL 228

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI--RT 688
            +    + +I+ D+L++S++E  +  L    V +D  + + + L +  A +K++ +  +T
Sbjct: 229 LKESYRMQNIIGDILELSRLEQPQATLSPALVDIDSLIKDTVELFEPLAKDKQLSLVYQT 288

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748
                +   + D  +VK I  N++SNAI ++ +G  I I   +  +  +I+ V+D GVG+
Sbjct: 289 KIKEEL---MLDYTTVKTILNNLVSNAIKYSNAG-VISIKCNYKDDN-LIIVVQDEGVGI 343

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           +   +      F Q+  S+  +  GTGLGL + K MV+ N G   + STP  GT   +  
Sbjct: 344 SKDNIPFIFDRFFQVDRSRSKKL-GTGLGLSIVKKMVELNNGTIDVESTPGIGTTFTVTL 402

Query: 809 PL 810
           P+
Sbjct: 403 PI 404


>gi|260459119|ref|ZP_05807374.1| PAS/PAC sensor hybrid histidine kinase [Mesorhizobium opportunistum
           WSM2075]
 gi|259034673|gb|EEW35929.1| PAS/PAC sensor hybrid histidine kinase [Mesorhizobium opportunistum
           WSM2075]
          Length = 858

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 99/663 (14%), Positives = 214/663 (32%), Gaps = 50/663 (7%)

Query: 175 FSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL 234
           F+   GF  +      ++          +   + + K       +   D+    S     
Sbjct: 69  FATAIGFVQITPRSTGDELSKAFVDSMSQGLLVTDTKGRVVYANRAYADMTGASSAADLK 128

Query: 235 RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG---T 291
            ++  +S + E       +    +       E  L +          ++ + +       
Sbjct: 129 TVEGLLSDVPEASVTIYRLASGLRDGQPGDGEFRLAQSIRPGAEPGARWYRARARAFSVP 188

Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLL 350
            Q     +++        +    F        + +D  P  FF     G + Y N +   
Sbjct: 189 GQRLPMLAWQLADISQERAEQERFFLDLQKAIDHLDHAPAGFFSADQDGRVTYINATLAE 248

Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
                       A  L      P +   + +  V   ++D      +     +      +
Sbjct: 249 WLGIDLASFTPGAVSL------PDIVAGDGMALVRSVKADPGTTRNAVIDLDLTTMTGEA 302

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470
           L + F+    A++     P   I             +    ++      +T   IA ++ 
Sbjct: 303 LPVRFMHRVSASREGIGGPTRTIVLNRTQGEDASADLRASEVRFTRFFNSTPMAIAGVDA 362

Query: 471 EGIILSTNRAVSKLFG--YPVEDILRK-PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
            G IL TN     LF      + + R+      +             +            
Sbjct: 363 SGRILRTNAPFLSLFSSVVDRDAVDRRVRLDTVIHGRDRPAFAAAFEKAR-QRQADIDPI 421

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSC-----YSLTMHDISEWKQEKNKLSHAKKIAEKES 582
            T+    E++ +   +                 +   D +E K  + +++ ++K+     
Sbjct: 422 DTVLPGNEDRHIRFYVNAVADGTGGEGAEESAIVYAVDTTEQKALEGQMAQSQKM----- 476

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
                    ++H+    LTAII  S+++         +P + +  N I ++ N    +V 
Sbjct: 477 QAVGQLAGGIAHDFNNVLTAIIMASDLLLTNHRP--SDPSFPDIMN-IKQNANRAASLVR 533

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702
            LL  S+    K  L  E ++L + +++ + ++        I ++     ++  +  D+ 
Sbjct: 534 QLLAFSR----KQTLRPEVLNLTDVLAD-LRMLLARLVGNDIKLKIDHGRDLWPVKVDIG 588

Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTT--------------HTSNEEVILRVRDTGVGM 748
             +Q+ +N+  NA    P+GG + + T                T+ + V++ V DTG G+
Sbjct: 589 QFEQVVVNLAVNARDAMPAGGDLTVRTRNVTTEECKTFPYRELTAADYVVVEVEDTGSGI 648

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
               L+K  +PF          G+GTGLGL +   ++    G  +  S   KG++  I  
Sbjct: 649 APDVLKKIFEPFFTTK----EVGKGTGLGLSMVYGIIKQTGGFIFCDSEVGKGSIFRIFL 704

Query: 809 PLY 811
           P +
Sbjct: 705 PRH 707



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 45/386 (11%), Positives = 99/386 (25%), Gaps = 25/386 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMI---GMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            D  G +   +       G  +   +      L DV           +   L+      G
Sbjct: 102 TDTKGRVVYANRAYADMTGASSAADLKTVEGLLSDV--PEASVTIYRLASGLRDGQPGDG 159

Query: 146 KTTLWP--IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
           +  L      G         A    +S   +      + +  +++   +       L K 
Sbjct: 160 EFRLAQSIRPGAEPGARWYRARARAFSVPGQRLPMLAWQLADISQERAEQERFFLDLQKA 219

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
             HL     G  S +++    +   +    L +   ++S T       D++  +   L+ 
Sbjct: 220 IDHLDHAPAGFFSADQDGRVTYINATLAEWLGID--LASFTPGAVSLPDIVAGDGMALVR 277

Query: 264 S-EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH---------PSLSA 313
           S +      +     ++L   T +       +    S E +                 SA
Sbjct: 278 SVKADPGTTRNAVIDLDLTTMTGEALPVRFMHRVSASREGIGGPTRTIVLNRTQGEDASA 337

Query: 314 YFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLT-KYKSVDDIEIAGGLSTLLD 371
                E       +  P+    V + G +   N  FL L       D ++    L T++ 
Sbjct: 338 DLRASEVRFTRFFNSTPMAIAGVDASGRILRTNAPFLSLFSSVVDRDAVDRRVRLDTVIH 397

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
                   A       R           L        +         +            
Sbjct: 398 GRDRPAFAAAFEKARQRQAD-IDPIDTVLPG--NEDRHIRFYVNAVADGTGGEGAEESAI 454

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSI 457
               +  + +  + +M  +  ++ ++
Sbjct: 455 VYAVDTTEQKALEGQM-AQSQKMQAV 479



 Score = 43.5 bits (101), Expect = 0.17,   Method: Composition-based stats.
 Identities = 37/323 (11%), Positives = 78/323 (24%), Gaps = 24/323 (7%)

Query: 79  IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK 138
                 F ++ D  G +  I+  L + +G             VS    +  +     L++
Sbjct: 224 DHAPAGF-FSADQDGRVTYINATLAEWLGIDLASF---TPGAVSLPDIVAGDG--MALVR 277

Query: 139 RQNTWYGKTTLWPIEGTNLYVPIDLAALPIY-----SRNREFSGFRGFGIVHVNRVDNDP 193
                 G T    I+       +   ALP+      S +RE  G     IV       D 
Sbjct: 278 SVKADPGTTRNAVIDLDL--TTMTGEALPVRFMHRVSASREGIGGPTRTIVLNRTQGEDA 335

Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP-------PHLRMKNKVSSLTEY 246
            A  +  + +F+          +       I    +P              ++   L   
Sbjct: 336 SADLRASEVRFTRFFNSTPMAIAGVDASGRILRTNAPFLSLFSSVVDRDAVDRRVRLDTV 395

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
              +D       +      ++ +   +     N +++ +            E  E  +  
Sbjct: 396 IHGRDRPAFAAAFEKARQRQADIDPIDTVLPGNEDRHIRFYVNAVADGTGGEGAEESAIV 455

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
                +        +      +        + G     N     +     +  +      
Sbjct: 456 YAVDTTEQKALEGQMAQS---QKMQAVGQLAGGIAHDFNNVLTAIIMASDL-LLTNHRPS 511

Query: 367 STLLDAPKLSDNNAIKPVMLYRS 389
                       NA +   L R 
Sbjct: 512 DPSFPDIMNIKQNANRAASLVRQ 534


>gi|254685207|ref|ZP_05149067.1| sensor histidine kinase [Bacillus anthracis str. CNEVA-9066]
 gi|254722614|ref|ZP_05184402.1| sensor histidine kinase [Bacillus anthracis str. A1055]
 gi|254737658|ref|ZP_05195361.1| sensor histidine kinase [Bacillus anthracis str. Western North
           America USA6153]
 gi|254743162|ref|ZP_05200847.1| sensor histidine kinase [Bacillus anthracis str. Kruger B]
 gi|254751973|ref|ZP_05204010.1| sensor histidine kinase [Bacillus anthracis str. Vollum]
 gi|291612197|ref|YP_019277.2| sensor histidine kinase [Bacillus anthracis str. 'Ames Ancestor']
 gi|224552860|gb|AAT31752.2| sensor histidine kinase [Bacillus anthracis str. 'Ames Ancestor']
          Length = 499

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 89/508 (17%), Positives = 177/508 (34%), Gaps = 41/508 (8%)

Query: 314 YFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                E      +   P+    +  +G+    N    ++T Y + + I     L  L   
Sbjct: 11  LLTRKEEELHTILQNMPVMVDALDYNGDFVLWNRECEIVTGYTAEEVIGNPDALQLLYPD 70

Query: 373 PKLSDNNAIKPVML----YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
                    K +         +      +  + TI W+                      
Sbjct: 71  HNYRHEIQKKFLTRGKNFRDWEMRLTCKNGEIKTIMWSN-----------ISEQFPVSGF 119

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
               +  +    +  + K++ +  +L  I +A  D   +   +G I+         F  P
Sbjct: 120 SYWAVGVDITHLKAIEEKLKQQTSELELIFQALPDLCFLTEDDGTIIDYKAGSPTKFYVP 179

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            E  + K F   L  +    +   + ++        +E     +   +           L
Sbjct: 180 AEAFMGKKFYEVLPSSVAQKLQEAICQVKEKGTNVIVEYPLTINESIDFF---EARCLPL 236

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                  + + DI+E K+ +  L+ +  +A           A V+HE+R PLT I GF +
Sbjct: 237 LHDK-IMIIVRDITERKKTEELLNKSDTLA-----AIGQLAAGVAHEVRNPLTVIKGFIQ 290

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
                    +      +Y + +      +  I+ + L I+K +     +  E  ++ +  
Sbjct: 291 ------LFQINKEDQEKYFDLMLSEIERIEAILQEFLSIAKTD----EISTEKKNIYQIF 340

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
              +SL+   A    I +     +    I      +KQ+ +NIL N+I   P GG+I I 
Sbjct: 341 KNVVSLINTKAIMTNIQVELYTDSKDIIIECSENQLKQVFINILQNSIEAMPDGGRISIH 400

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                 + +I+ V D G+G+    +++  +PF         + +GTG+GL L+  +++++
Sbjct: 401 IKEIGKDGIIISVIDKGIGIPAERIKRLGEPFY------STKEKGTGIGLMLSYKIIESH 454

Query: 789 MGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
            G   I S    GT + I  P   +  P
Sbjct: 455 QGNISIMSEVGVGTTVTIYLPKIQSKKP 482


>gi|49185464|ref|YP_028716.1| sensor histidine kinase [Bacillus anthracis str. Sterne]
 gi|270000560|ref|NP_844998.2| sensor histidine kinase [Bacillus anthracis str. Ames]
 gi|49179391|gb|AAT54767.1| sensor histidine kinase [Bacillus anthracis str. Sterne]
 gi|269850257|gb|AAP26484.2| sensor histidine kinase [Bacillus anthracis str. Ames]
          Length = 509

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 89/508 (17%), Positives = 177/508 (34%), Gaps = 41/508 (8%)

Query: 314 YFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                E      +   P+    +  +G+    N    ++T Y + + I     L  L   
Sbjct: 21  LLTRKEEELHTILQNMPVMVDALDYNGDFVLWNRECEIVTGYTAEEVIGNPDALQLLYPD 80

Query: 373 PKLSDNNAIKPVML----YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
                    K +         +      +  + TI W+                      
Sbjct: 81  HNYRHEIQKKFLTRGKNFRDWEMRLTCKNGEIKTIMWSN-----------ISEQFPVSGF 129

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
               +  +    +  + K++ +  +L  I +A  D   +   +G I+         F  P
Sbjct: 130 SYWAVGVDITHLKAIEEKLKQQTSELELIFQALPDLCFLTEDDGTIIDYKAGSPTKFYVP 189

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            E  + K F   L  +    +   + ++        +E     +   +           L
Sbjct: 190 AEAFMGKKFYEVLPSSVAQKLQEAICQVKEKGTNVIVEYPLTINESIDFF---EARCLPL 246

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                  + + DI+E K+ +  L+ +  +A           A V+HE+R PLT I GF +
Sbjct: 247 LHDK-IMIIVRDITERKKTEELLNKSDTLA-----AIGQLAAGVAHEVRNPLTVIKGFIQ 300

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
                    +      +Y + +      +  I+ + L I+K +     +  E  ++ +  
Sbjct: 301 ------LFQINKEDQEKYFDLMLSEIERIEAILQEFLSIAKTD----EISTEKKNIYQIF 350

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
              +SL+   A    I +     +    I      +KQ+ +NIL N+I   P GG+I I 
Sbjct: 351 KNVVSLINTKAIMTNIQVELYTDSKDIIIECSENQLKQVFINILQNSIEAMPDGGRISIH 410

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                 + +I+ V D G+G+    +++  +PF         + +GTG+GL L+  +++++
Sbjct: 411 IKEIGKDGIIISVIDKGIGIPAERIKRLGEPFY------STKEKGTGIGLMLSYKIIESH 464

Query: 789 MGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
            G   I S    GT + I  P   +  P
Sbjct: 465 QGNISIMSEVGVGTTVTIYLPKIQSKKP 492


>gi|110642429|ref|YP_670159.1| sensory histidine kinase AtoS [Escherichia coli 536]
 gi|191170106|ref|ZP_03031660.1| sensory box histidine kinase AtoS [Escherichia coli F11]
 gi|110344021|gb|ABG70258.1| sensor protein AtoS [Escherichia coli 536]
 gi|190909622|gb|EDV69207.1| sensory box histidine kinase AtoS [Escherichia coli F11]
          Length = 608

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 83/371 (22%), Positives = 171/371 (46%), Gaps = 28/371 (7%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            + +         I+E  +DG+  I+R+G + + N A   + GY   +++ +P+++    
Sbjct: 254 AQALRETRTLNDLIIENAADGVIAIDRQGDVTTMNPAAEVITGYQRHELVGQPYSMLF-- 311

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMH 559
              +     + + L                ++ + + L +   ++  +        +   
Sbjct: 312 -DNTQFYSPVLDTLEHGTEHV-ALEISFPGRD-RTIELSVTTSRIHNTHGEMIGALVIFS 368

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           D++  K+ + +++ A+++A        + +A V+HE+R PLTAI G+ ++++ Q   P+ 
Sbjct: 369 DLTARKETQRRMAQAERLAT-----LGELMAGVAHEVRNPLTAIRGYVQILRQQTRDPI- 422

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
              + EY + + +  + +  ++  LL+ S+    +    ++ VSL+  V E + LVQ   
Sbjct: 423 ---HQEYLSVVLKEIDSINKVIQQLLEFSRPRHSQ----WQQVSLNALVEETLVLVQTAG 475

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
            + R+   +   N +  I AD   +KQ+ LNIL NA+    + G+I I T   S+ +  +
Sbjct: 476 VQARVDFISELDNELSPINADRELLKQVLLNILINAVQAISARGKIRIRTWQYSDSQQAI 535

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            + D G G+     +K   PF     S      GTGLGL L++ +++A+ G   + S P 
Sbjct: 536 SIEDNGSGIDLSLQKKIFDPFFTTKAS------GTGLGLALSQRIINAHQGDIRVASLPG 589

Query: 800 KGTLIEIIFPL 810
            G    +I P+
Sbjct: 590 YGATFTLILPI 600



 Score = 40.4 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/117 (10%), Positives = 37/117 (31%), Gaps = 6/117 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G +  ++       G    +++G     +    +    + + D L+          
Sbjct: 278 IDRQGDVTTMNPAAEVITGYQRHELVGQPYSMLF--DNTQFYSPVLDTLEHGTEHVALEI 335

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
            +P     + + +  +   I++ + E  G     I        + +    + ++  +
Sbjct: 336 SFPGRDRTIELSVTTS--RIHNTHGEMIGA--LVIFSDLTARKETQRRMAQAERLAT 388


>gi|120556502|ref|YP_960853.1| PAS/PAC sensor signal transduction histidine kinase [Marinobacter
           aquaeolei VT8]
 gi|120326351|gb|ABM20666.1| PAS/PAC sensor signal transduction histidine kinase [Marinobacter
           aquaeolei VT8]
          Length = 440

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 72/424 (16%), Positives = 159/424 (37%), Gaps = 35/424 (8%)

Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN-----KR 445
              +   A L                P    ++ P+++   G   + +          + 
Sbjct: 32  GLLVGLVAYLWWTLVQARRLYQWLGNPSAS-DEAPQSIGLWGEIFDSLHKLNQNHLMTQD 90

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           ++   + ++     A  DG+ + +  G +   N +   L G+       +     +    
Sbjct: 91  RLRARINRVQESTNAMRDGVIMTDARGAMEWWNGSAEYLLGFRRSTDQGQYIHNLIRNPA 150

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
                            +   +    ++  +  + L+I I          +   D++   
Sbjct: 151 FKAYFD----------TRDYREPLEINSPAKPHIHLQIQISLFGDDDR-LIVAKDVTRLY 199

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           Q +                + DF+  VSHE+RTPLT I G+ E + +   G     ++  
Sbjct: 200 QLE--------------QMRRDFVGNVSHEMRTPLTVISGYLETLVD--HGDELPAKWRR 243

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
             N +    + +  ++ DL+ +S+IE+G+  +      +D  +++     +  + +K   
Sbjct: 244 AINTMAAQASRMEALITDLILLSRIETGEHTVDDTLTDVDALLNQICHDARALSGDKGHQ 303

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           I    +++   +  D   ++    N++ NA+ +TP GG I ++ +   +    L V+DTG
Sbjct: 304 ITVQISDH-RLLQGDESQLRSAFSNLVFNAVKYTPPGGAITVAWSTNRDG-AHLSVKDTG 361

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+    + +  + F +   S+     GTGLGL + K ++  + G   I S   +G+   
Sbjct: 362 IGIDPIHIPRLTERFYRADPSRHKDTGGTGLGLAIVKHVLINHDGNLEIRSKVGEGSEFI 421

Query: 806 IIFP 809
             FP
Sbjct: 422 CHFP 425


>gi|254558948|ref|YP_003066043.1| two component low oxygen sensor histidine kinase with PAS domains;
           FixL [Methylobacterium extorquens DM4]
 gi|254266226|emb|CAX21984.1| two component low oxygen sensor histidine kinase with PAS domains;
           FixL [Methylobacterium extorquens DM4]
          Length = 516

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 81/501 (16%), Positives = 189/501 (37%), Gaps = 29/501 (5%)

Query: 320 NLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
           +   +T+D+  +  +      G +   +P+   L      + +        L       +
Sbjct: 21  DQLWQTLDEAGVCIWSLDIPTGRVT-ISPACARLFGVSP-EQLTTFAATQAL----VHPE 74

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
           +   +   + R+ R   +       ++ +      +        +         G+    
Sbjct: 75  DRPARAEAIQRALREGGSYEVDYRAVRPDG-QVFWLRSRGRVALDADGRPAHHRGVVLTI 133

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
            + +  +  +      L SIL+   + + +I+  G I S + A  +LFGY   +++ +  
Sbjct: 134 HEQKQAEADLRAREAHLRSILDTVPEAMVVIDEAGTIDSFSAAAERLFGYTAAEVIGQNV 193

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTL--EKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555
            + + +      + YL        R+ +   ++  G   +     + + I ++       
Sbjct: 194 RMLMPEPMRGEHDGYLEHYRRTRERRIIGTNRVVTGQRADGTTFPMELAIGEMRSGEQVF 253

Query: 556 --LTMHDISEWKQEKNKLSHAKKIAEKESS--HKSDFLARVSHEIRTPLTAIIGFSEVIK 611
               ++D++E ++ + +L   +      S      +  + ++HE+  PL AI  +++  +
Sbjct: 254 FTGFVNDLTEHQRTQQRLQELQSELVHVSRLSAMGEMASTLAHELNQPLGAISNYTKGCR 313

Query: 612 N--QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
                 GP    + +E  +           I+  L +   +  G+     EPVS    + 
Sbjct: 314 RLLANPGPEAIAKSMEVLDKTAEQALRAGQIIRRLREF--VTRGETERRLEPVS--RLIE 369

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP--SGGQIII 727
           EA +L  + A E+ +  R   A  +  +LAD   V+Q+ +N++ NA          ++ +
Sbjct: 370 EASALALVGAREQGVAARIRIAPGLKAVLADRVQVQQVLVNLMRNAREAMQQSERREMAV 429

Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
                S+E V + V DTG G+ +   ++  +PF     S      G G+GL + + +++A
Sbjct: 430 DAHALSSEMVEISVSDTGPGIADEVADRLFQPFVTTKVS------GMGVGLSICRTIIEA 483

Query: 788 NMGKFYIFSTPAKGTLIEIIF 808
           + G+  +    A G    +  
Sbjct: 484 HGGRLTVERNVAGGATFRLTL 504



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 32/381 (8%), Positives = 82/381 (21%), Gaps = 25/381 (6%)

Query: 86  TWNID-AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144
            W++D   G +  IS    +  G    ++               P          +    
Sbjct: 34  IWSLDIPTGRVT-ISPACARLFGVSPEQLTTFAATQALVHPEDRPARAEAIQRALREGGS 92

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            +     +        +          +   +  RG  +V          A  +  +   
Sbjct: 93  YEVDYRAVRPDGQVFWLRSRGRVALDADGRPAHHRG--VVLTIHEQKQAEADLRAREAHL 150

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPP------PHLRMKNKVSSLTEYYAHKDDVLKTEK 258
             + +       V  E   I S  +            +  +   +      + +     +
Sbjct: 151 RSILDTVPEAMVVIDEAGTIDSFSAAAERLFGYTAAEVIGQNVRMLMPEPMRGEHDGYLE 210

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
           +   T E   +           +  T        +  S E   +    N  +      + 
Sbjct: 211 HYRRTRERRIIGTNRVVTGQRADGTTFPMELAIGEMRSGEQVFFTGFVNDLTEHQRTQQR 270

Query: 319 ENLTPETVDKCP------------IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
                  +                        G +         L      + I  +  +
Sbjct: 271 LQELQSELVHVSRLSAMGEMASTLAHELNQPLGAISNYTKGCRRLLANPGPEAIAKSMEV 330

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
                   L     I+ +  + +         RL  +    E + A+  +   +      
Sbjct: 331 LDKTAEQALRAGQIIRRLREFVTRGET---ERRLEPVSRLIEEASALALVGAREQGVAAR 387

Query: 427 NMPQNGIEPEDVDTRINKRKM 447
                G++    D    ++ +
Sbjct: 388 IRIAPGLKAVLADRVQVQQVL 408


>gi|148560078|ref|YP_001259900.1| putative sensory box histidine kinase [Brucella ovis ATCC 25840]
 gi|148371335|gb|ABQ61314.1| putative sensory box histidine kinase [Brucella ovis ATCC 25840]
          Length = 837

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 131/724 (18%), Positives = 263/724 (36%), Gaps = 49/724 (6%)

Query: 110 AFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN--TWYGKTTLWPIEGTNLYVPIDLAALP 167
              ++G                  G  L+ Q+        +    +     + ++     
Sbjct: 128 RADVVGQLPDACGAPQDRPAFLAFGRWLRPQSVTALERAISTLREQARAFDLTVETVNGS 187

Query: 168 IYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ 227
           +   +   SG  GF +    +     +A    L+ +   L +  +    +          
Sbjct: 188 LLDVHGRTSG--GFAVA-CFQSLQGVQAERASLEAQNRELADRIELMRRLLDRIEQPAWL 244

Query: 228 QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287
           +     +   N   +     A+    + +E   L  ++     E++ F    + +     
Sbjct: 245 RDGNGRIEWVNLAYAQAVDMANASQ-VISEGRELFGAQARQRLERDRFAEPVVQEQLTAV 303

Query: 288 YFGTLQ--------NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG 339
             G  +          S             ++            ET+D+      ++   
Sbjct: 304 VHGDRRVFDVIDVSAESGSVGLGFDLTEVQAVRDELSRTLKSHAETLDQLSTAVAIFDPE 363

Query: 340 -NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398
             L + N +F+ L     V  +E     + + D  +       +P      D    A  A
Sbjct: 364 MKLQFFNQAFVKLWGL-DVAWLETRPSNTLIFDRLRAEGKLPEQPEWRKWKDSLLSAYRA 422

Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI- 457
                    E    M  +P  +  +   N    G      +    K ++E     L  + 
Sbjct: 423 V--------EPEEHMWHLPDTRTMRVVANPHPQGGVTWFFENMTEKFELEGRYNTLIKVQ 474

Query: 458 ---LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYL 513
              L+  ++ +A+   +G +  +N + + L+  P E +      ++  +       +   
Sbjct: 475 GETLDHLAEAVAVFGSDGRLRLSNPSFAALWSLPSEMVREGTHISIIAKLCNQRGGDGLW 534

Query: 514 TEILSLDLRQTLEKITL---GSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570
            + +S       ++          +  +LS  ++           LT  D+++  + +  
Sbjct: 535 EDFVSTVTGFLDQRDGRMGQVELSDGAILSFAVVPLP---KGQTMLTFIDVTDTVRVERA 591

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           L    +  E     K+DF+  VS+E+R+PLT IIGF+E+++   FG L N R +EY ++I
Sbjct: 592 LKEKNEALELADQIKNDFVQHVSYELRSPLTNIIGFTELLQTPAFGSL-NERQLEYLDHI 650

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
             S +++L IVND+LD++ +++G M L    VS+ EA+S A S V     +  I +    
Sbjct: 651 STSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEAISAAASRVSERLRDHNIGLDVDI 710

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
           A+++    AD   V+Q+  N+LSNA+++ P G  I++        +V+  V D G GM +
Sbjct: 711 ADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVLQVA-RDGADVVFAVHDDGHGMPS 769

Query: 751 YELEKAMKPFGQIPN-----SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
             L+   K F   PN        +          + K+ V+ + G+  I +   +GT + 
Sbjct: 770 EVLDTVFKRFQSYPNGGRRRGAGLGLA-------IVKSFVELHGGRVEIDTGEERGTTVI 822

Query: 806 IIFP 809
             FP
Sbjct: 823 CHFP 826


>gi|330821098|ref|YP_004349960.1| Multi-sensor hybrid histidine kinase [Burkholderia gladioli BSR3]
 gi|327373093|gb|AEA64448.1| Multi-sensor hybrid histidine kinase [Burkholderia gladioli BSR3]
          Length = 1246

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 100/648 (15%), Positives = 185/648 (28%), Gaps = 30/648 (4%)

Query: 176  SGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ-SPPPHL 234
             G      V    +     AL +  ++ +       +                      +
Sbjct: 471  EGRHAVCEVADTGIGVAADALPRLFERFYRVAGNAGRSMEGTGIGLALARELVGLHGGTI 530

Query: 235  RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294
               ++V   T +               L +E +          +                
Sbjct: 531  EAASEVGRGTTFTIRLPFGTAHLPAESLAAEPARPARPLVEEALPWLPSGGGAAAPGRAE 590

Query: 295  NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKY 354
               +     +      ++    +  +     +        V        A          
Sbjct: 591  PGGDRRFASTFGARIVVADDNADMRDYLLALLGGAYRVEAVDDGLRALAAAHREPPDLVL 650

Query: 355  KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
              V  +    G +        +    +  +ML           A                
Sbjct: 651  TDV-MMPNLDGFALREALRAEAATREVPVIMLSARAGEQARIEAI-------DAGVDDYL 702

Query: 415  FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII 474
              PF               + E  + R  + ++     Q+ ++L+    G+ +I+ +G  
Sbjct: 703  VKPFSARELLARIGAVLERDAELRERRAVQERLRRRTAQIETLLDVAPIGVLLIDADGRF 762

Query: 475  LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL----TEILSLDLR--QTLEKI 528
            +  N A  +  G    D+L + F               +       L    R        
Sbjct: 763  VEVNPAARRALGLRR-DLLGRDFREVTRLIWRRAYADEIIGIFQRTLETGERFFTPERVE 821

Query: 529  TLGSTKEEKLLSLRIIIKKLPFSS-CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
            T   T   +    ++    LP           D+S   Q        ++  +     K +
Sbjct: 822  TRLDTGRTEFYEWQVDRIGLPDGRHGLVCYFRDVSAQVQA-------RQRMQHADRQKDE 874

Query: 588  FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
            FLA ++HE+R PL  +    E++           R         R   ++  +V DLL++
Sbjct: 875  FLAMLAHELRNPLAPVRHCVELLAASPDDARVPGRVTPIL---MRQTGILGRLVEDLLEV 931

Query: 648  SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707
            S+I  G + L  EPV LD  V +A+   +     +   +       +  +L D   + Q 
Sbjct: 932  SRITRGLVTLRREPVRLDSIVEQAVEAARPLFEARGHALTVHGDPAL-TVLGDPTRLVQC 990

Query: 708  ALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
             LN+L+NA  +T  GG I I  +       ++ V D G G+    L      F Q   + 
Sbjct: 991  VLNLLNNAAKYTEPGGAIRIE-SVRREARAVIGVTDNGRGIPAELLPHVFNLFVQGERTP 1049

Query: 768  QIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFPLYDTS 814
              R  G G+GL +   +V  + G     S  P  G   EI  PL+   
Sbjct: 1050 DRREGGLGIGLSIVAELVARHGGSVAADSAGPGLGARFEIALPLHAAE 1097



 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 85/570 (14%), Positives = 171/570 (30%), Gaps = 56/570 (9%)

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTK 353
           +     F++      PS     +    L+     + PI  F  S   + Y +     L +
Sbjct: 2   SRRVAEFDWARTPLGPSAQWPQNLRSALSLCLGSRFPILLFWGSEFRMLYNDAYVPFLGQ 61

Query: 354 YKSVDDIEIA-------------GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400
            K  + +                  L  +  + + + ++  +        R  +  +   
Sbjct: 62  AKHPEALGSPADICWREIWGRIGPMLEGVTRSGEATWSDDEQFFFERALPREEVYVTFTY 121

Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
             I    E  +   F+P  +  +   +  +     +        R+++    ++ + L  
Sbjct: 122 GPIFSEDERRVDGIFVPCTETTEKIVSARRLDTLRQLGARSGETRELDDACRRIAAALSE 181

Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520
                   +     L          G   E       ++ LE          L  + +  
Sbjct: 182 NR-----FDVSFAALY---RAEAEPGGEGEPRFSLLASMGLEAAALEPSAWPLASVQASG 233

Query: 521 LRQTLEKITLGSTKEEKLLS-----LRIIIKKLPFSSCY-SLTMHDISEWKQEKNKLSHA 574
               LE    G+              R++  +           +  +S  +         
Sbjct: 234 QPLVLELPEEGAVLPGGAWPEPSTLARVVPLRWSGDGRVDGAVVLGVSPRRPLDAAYLSF 293

Query: 575 KK------------------------IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
           ++                           +    K+ F + +SHE R   T +      +
Sbjct: 294 QELVAGNIETAIANALAYQQERRRAEALIELDRGKTAFFSNISHEFR---TPLTLLLGPL 350

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
           +     P               +   +L +VN LLD ++IE+G++   F P  L     +
Sbjct: 351 EEACANPQVPEGVRAQLGIAHGNSRRLLRLVNALLDFAQIEAGRLRASFRPTDLAALTRD 410

Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
             S  +       + +          +  D    +++  N+LSNA  FT  G  I +   
Sbjct: 411 IASPFRSMIERAGLRLAVVCEALGEPVHVDAELWEKVLSNLLSNAFKFTLQGA-IEVRLR 469

Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
                 V   V DTG+G+    L +  + F ++  +     EGTG+GL LA+ +V  + G
Sbjct: 470 REGRHAVC-EVADTGIGVAADALPRLFERFYRVAGNAGRSMEGTGIGLALARELVGLHGG 528

Query: 791 KFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820
                S   +GT   I  P      P + +
Sbjct: 529 TIEAASEVGRGTTFTIRLPFGTAHLPAESL 558



 Score = 57.7 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 32/309 (10%), Positives = 65/309 (21%), Gaps = 25/309 (8%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-----NHIGDLLKRQN-- 141
            IDA G   E++    + +G     ++G    +V+ ++                L+     
Sbjct: 756  IDADGRFVEVNPAARRALGLRRD-LLGRDFREVTRLIWRRAYADEIIGIFQRTLETGERF 814

Query: 142  -TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRG-FGIVHVNRVDNDPRALGKR 199
             T     T      T  Y            R     G  G              R   + 
Sbjct: 815  FTPERVETRLDTGRTEFYEWQV-------DRIGLPDGRHGLVCYFRDVSAQVQARQRMQH 867

Query: 200  LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
             D++      +                +               +T     +  +L     
Sbjct: 868  ADRQKDEFLAMLAHELRNPLAPVRHCVELLAASPDDA-RVPGRVTPILMRQTGILGRLVE 926

Query: 260  PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
             LL     +                 +Q     +   +     L+    P+L+   D   
Sbjct: 927  DLLEVSRITRGLVTLRREPVRLDSIVEQAVEAARPLFEARGHALTVHGDPALTVLGDPT- 985

Query: 320  NLTPETVDKCPIPFFVYSHG---NLFYANPSFLLLTKYKSVDDIEIAGGLST---LLDAP 373
             L    ++           G    +         +           A  L     L    
Sbjct: 986  RLVQCVLNLLNNAAKYTEPGGAIRIESVRREARAVIGVTDNGRGIPAELLPHVFNLFVQG 1045

Query: 374  KLSDNNAIK 382
            + + +    
Sbjct: 1046 ERTPDRREG 1054


>gi|237730370|ref|ZP_04560851.1| phosphate regulon sensor protein [Citrobacter sp. 30_2]
 gi|226905909|gb|EEH91827.1| phosphate regulon sensor protein [Citrobacter sp. 30_2]
          Length = 431

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 72/427 (16%), Positives = 149/427 (34%), Gaps = 37/427 (8%)

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             +L       I     L  + W     L +         +        G+    +  + 
Sbjct: 33  WFLLASVTGLLIWHFWNLLRLSW----WLWVDRSMTPPPGRGSWEPLLYGLHQMQLRNKK 88

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            +R++   + +  S  E+  D + +   EG I   N    ++ G    D   +     L 
Sbjct: 89  RRRELGNLIKRFRSGAESLPDAVVLTTEEGGIFWCNGLAQQVLGLRWPDDSGQNILNLLR 148

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
                    +   + + D  + +  +            L I +          +   D++
Sbjct: 149 YP------EFTQYLKTRDFSRPINLVLNTGRH------LEIRVMPYTDKQ-LLMVARDVT 195

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  Q +                + +F A  SHE+RTPLT + G+ E+++          +
Sbjct: 196 QMHQLEG--------------SRRNFFANASHELRTPLTVLQGYLEMMQEHPLEGTTREK 241

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                + +      +  +V  LL +SKIE+       E V +   +       Q  +  K
Sbjct: 242 A---LHTMREQTYRMEGLVKQLLTLSKIEAAPTLQLNEKVDVPMMLRVIEHEAQTLSQHK 298

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
                    N++  +  +   ++    N++ NA++ TP+G  I +   H ++      V 
Sbjct: 299 H-TFTFDVDNSL-NVRGNEEQLRSAISNLVYNAVNHTPAGTHITVRWHHVASG-AEFCVE 355

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G G+    + +  + F ++  ++  +  G+GLGL + K  +  +  +  I S P KGT
Sbjct: 356 DNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHALHHHDSRLNIESEPGKGT 415

Query: 803 LIEIIFP 809
               + P
Sbjct: 416 RFSFMIP 422


>gi|218779594|ref|YP_002430912.1| Hpt sensor hybrid histidine kinase [Desulfatibacillum alkenivorans
           AK-01]
 gi|218760978|gb|ACL03444.1| Hpt sensor hybrid histidine kinase [Desulfatibacillum alkenivorans
           AK-01]
          Length = 1102

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 71/239 (29%), Positives = 115/239 (48%), Gaps = 10/239 (4%)

Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
            AE  +  K  FLA +SHEIRTP+  +IG  E++   R     N    EY   I+ S   
Sbjct: 421 EAELANMAKGVFLANMSHEIRTPMNGVIGMGELLMETRL----NSEQTEYVERINSSAQA 476

Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP- 695
           +L ++ND+LD SKI++ K++L     +L   V     ++ + A EK +       +++P 
Sbjct: 477 LLRVINDILDYSKIDADKLDLEVIEFNLRNTVEGVADVISVPAEEKGVEAACLIHHDVPL 536

Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEE--VILRVRDTGVGMTNYE 752
            +  D   ++QI +N+  NA+ FT  G   I +S      E   +   VRD+G+G+    
Sbjct: 537 WLKGDPGRLRQILMNLSGNAVKFTEKGEVVIRVSLDSEDEETAVIRFEVRDSGIGIPPDV 596

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII--FP 809
            +    PF Q  +S   +  GTGLGL ++K + +   G+  + S   KG+        P
Sbjct: 597 QKTLFTPFTQADSSTTRKHGGTGLGLAISKKLSELMGGEIGLTSEEGKGSTFWFTAVLP 655


>gi|319783770|ref|YP_004143246.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
 gi|317169658|gb|ADV13196.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 857

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 100/663 (15%), Positives = 214/663 (32%), Gaps = 50/663 (7%)

Query: 175 FSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL 234
           F+   GF  V      ++          +   + + K       +   D+    S     
Sbjct: 69  FATAIGFVQVTPRSTGDELSKSFVDSMSQGLLVTDTKGRVVYANRAYADMTGASSAADLK 128

Query: 235 RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG---T 291
            ++  +S + E       +    +       E  L +          ++ + +       
Sbjct: 129 TVEGLLSDVPEASVTIYRLASGLRDGQPGDGEFRLAQSIRPGAEPGARWYRARARAFSVP 188

Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLL 350
            Q     +++        +    F        + +D  P  FF     G + Y N +   
Sbjct: 189 GQRLPMLAWQLADISQERAEQERFFLDLQKAIDHLDHAPAGFFSADQEGRVTYINATLAE 248

Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
                       A  LS ++    ++       V   ++D      +     +      +
Sbjct: 249 WLGIDLTSFTPGAVSLSEIVAGDGMA------LVRSVKADPGTTRNAVIDLDLTTMTGEA 302

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470
           L + F+    A++   N P   I             +    ++      +T   IA ++ 
Sbjct: 303 LPVRFMHRVSASREGLNGPTRTIVLNRTQGEDASADLRASEVRFTRFFNSTPMAIAGVDH 362

Query: 471 EGIILSTNRAVSKLFG--YPVEDILRK-PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
            G IL TN     LF      + + R+      + +           +            
Sbjct: 363 NGRILRTNAPFLSLFSSVVDRDAVDRRVRLDTVIHERDRPAFAAAFEKA-QQRQADIEPI 421

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSC-----YSLTMHDISEWKQEKNKLSHAKKIAEKES 582
            TL    +E+ +   +                 +   + +E K  + +++ ++K+     
Sbjct: 422 DTLLPGNDERHIRFYVNAVADGTGGEGAEESAIVYAVETTEQKALEGQMAQSQKM----- 476

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
                    ++H+    LTAII  S+++         +P + +  N I ++ N    +V 
Sbjct: 477 QAVGQLAGGIAHDFNNVLTAIIMASDLLLTNHRP--SDPSFPDIMN-IKQNANRAASLVR 533

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702
            LL  S+    K  L  E ++L + +++ + ++        I ++     ++  +  D+ 
Sbjct: 534 QLLAFSR----KQTLRPEVLNLTDVLAD-LRMLLARLVGNDIKLKVDHGRDLWPVKVDIG 588

Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTT--------------HTSNEEVILRVRDTGVGM 748
             +Q+ +N+  NA    P+GG + + T                   + V++ V DTG G+
Sbjct: 589 QFEQVVVNLAVNARDAMPAGGDLTVRTRNVTAEECKAFSYRELAPADYVVVEVEDTGSGI 648

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
               L+K  +PF          G+GTGLGL +   ++    G  +  S   KG+   I  
Sbjct: 649 APDVLKKIFEPFFTTK----EVGKGTGLGLSMVYGIIKQTGGFIFCDSEVGKGSTFRIFL 704

Query: 809 PLY 811
           P +
Sbjct: 705 PRH 707



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 46/387 (11%), Positives = 103/387 (26%), Gaps = 27/387 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMI---GMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            D  G +   +       G  +   +      L DV           +   L+      G
Sbjct: 102 TDTKGRVVYANRAYADMTGASSAADLKTVEGLLSDV--PEASVTIYRLASGLRDGQPGDG 159

Query: 146 KTTLWP--IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
           +  L      G         A    +S   +      + +  +++   +       L K 
Sbjct: 160 EFRLAQSIRPGAEPGARWYRARARAFSVPGQRLPMLAWQLADISQERAEQERFFLDLQKA 219

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
             HL     G  S ++E    +   +    L +   ++S T       +++  +   L+ 
Sbjct: 220 IDHLDHAPAGFFSADQEGRVTYINATLAEWLGID--LTSFTPGAVSLSEIVAGDGMALVR 277

Query: 264 S-EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH---------PSLSA 313
           S +      +     ++L   T +       +    S E L+                SA
Sbjct: 278 SVKADPGTTRNAVIDLDLTTMTGEALPVRFMHRVSASREGLNGPTRTIVLNRTQGEDASA 337

Query: 314 YFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLT-KYKSVDDIEIAGGLSTLLD 371
                E       +  P+    V  +G +   N  FL L       D ++    L T++ 
Sbjct: 338 DLRASEVRFTRFFNSTPMAIAGVDHNGRILRTNAPFLSLFSSVVDRDAVDRRVRLDTVIH 397

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA-NQFPENMPQ 430
                 +         ++ +           +  N E  +                    
Sbjct: 398 E----RDRPAFAAAFEKAQQRQADIEPIDTLLPGNDERHIRFYVNAVADGTGGEGAEESA 453

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSI 457
                E  + +  + +M  +  ++ ++
Sbjct: 454 IVYAVETTEQKALEGQM-AQSQKMQAV 479



 Score = 44.2 bits (103), Expect = 0.079,   Method: Composition-based stats.
 Identities = 31/325 (9%), Positives = 73/325 (22%), Gaps = 28/325 (8%)

Query: 79  IPRTVRFTWNIDAHGYLKEISEELPKTIG-----NYAFKMIGMRLCDVSDILHIDPNNHI 133
                 F ++ D  G +  I+  L + +G          +    L ++     +     +
Sbjct: 224 DHAPAGF-FSADQEGRVTYINATLAEWLGIDLTSFTPGAV---SLSEIVAGDGMALVRSV 279

Query: 134 GDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF--GIVHVNRVDN 191
                   T      L     T   +P+      ++  +    G  G    IV       
Sbjct: 280 KA--DPGTTRNAVIDLDLTTMTGEALPVRF----MHRVSASREGLNGPTRTIVLNRTQGE 333

Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP-------PHLRMKNKVSSLT 244
           D  A  +  + +F+          +       I    +P              ++   L 
Sbjct: 334 DASADLRASEVRFTRFFNSTPMAIAGVDHNGRILRTNAPFLSLFSSVVDRDAVDRRVRLD 393

Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
                +D       +      ++ +   +     N  ++ +            E  E  +
Sbjct: 394 TVIHERDRPAFAAAFEKAQQRQADIEPIDTLLPGNDERHIRFYVNAVADGTGGEGAEESA 453

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364
                  +        +      +        + G     N     +     +  +    
Sbjct: 454 IVYAVETTEQKALEGQMAQS---QKMQAVGQLAGGIAHDFNNVLTAIIMASDL-LLTNHR 509

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRS 389
                         NA +   L R 
Sbjct: 510 PSDPSFPDIMNIKQNANRAASLVRQ 534


>gi|296104455|ref|YP_003614601.1| hybrid sensory histidine kinase BarA [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295058914|gb|ADF63652.1| hybrid sensory histidine kinase BarA [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 919

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 86/333 (25%), Positives = 152/333 (45%), Gaps = 17/333 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +FG+ +   +  P    +               L   +   +             +++ +
Sbjct: 193 IFGWRLMRDVTGPIRNMVNTVDR-----IRRGQLDSRVEGFMLGELDMLKNGINSMAMSL 247

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 248 AAYHEEMQHNVDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTP 307

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+            NP   ++ + I+RS N +L I+ND+LD SK+E+GK+ L  
Sbjct: 308 LNGVIGFT----RLTLKSELNPTQRDHLHTIERSANNLLAIINDVLDFSKLEAGKLILES 363

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P  L   + E ++L+   +++K + +  +  N++P  ++ D   ++Q+  N++ NAI F
Sbjct: 364 IPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKF 423

Query: 719 TPSGGQ-IIISTTHTSNEEVILRV--RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T SG   I++     SN +V + V  RDTG+G+   +  +  + F Q   S   R  GTG
Sbjct: 424 TESGNIDILVEKRAISNNKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTG 483

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           LGL + + +V    G     S P +G+      
Sbjct: 484 LGLVITQKLVKEMGGDISFHSQPNRGSTFWFHI 516


>gi|228932403|ref|ZP_04095285.1| hypothetical protein bthur0009_8810 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228827339|gb|EEM73091.1| hypothetical protein bthur0009_8810 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 896

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 79/338 (23%), Positives = 147/338 (43%), Gaps = 18/338 (5%)

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            +D++ +            +    +  +L      T E        + +   L++  ++L
Sbjct: 395 HQDLIHQTVDNLGLTIHSIMGRMRIQTLLHESQAMTEELQVQSEELQTQAEELQMQAEEL 454

Query: 549 PFSSCYSLTMHDISEWKQEKN-----KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
             ++    +  + +E K         +L        + S +KS+FLA +SHE+RTPL +I
Sbjct: 455 RTTNEQLESRTEEAEQKTADLQITKLELEEKASELLRSSKYKSEFLANMSHELRTPLNSI 514

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +  SE++K      L +    E A  I  SG  +L ++ND+LD+SK+E+GK+++ FE  +
Sbjct: 515 LLLSEMLKENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIFEATN 573

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSG 722
           + +  +         A +K +      ++ IP +   D + ++QI  N+LSNA  FT  G
Sbjct: 574 ISDMAASMHQNFLHIAAQKNVEFTVEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKG 633

Query: 723 GQ------IIISTTHTS-----NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
                   I  S           + + + V+DTG+G+   + +   + F Q   +   + 
Sbjct: 634 SVSLHFDSIETSNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGATIRKY 693

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            GTGLGL + K       G   + S   +G+   +  P
Sbjct: 694 GGTGLGLSICKEFARLLGGWITLESHVGEGSTFTVYIP 731


>gi|153216852|ref|ZP_01950628.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae 1587]
 gi|124114109|gb|EAY32929.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae 1587]
          Length = 1146

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 90/382 (23%), Positives = 160/382 (41%), Gaps = 24/382 (6%)

Query: 441 RINKRKMEIEVMQLC---SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP- 496
           R +++  ++   QL     +L+A    I I + +G ++ TN A  K++    E    +P 
Sbjct: 481 RSSEQVAKLSTEQLRWLTELLDAIPSMIFISDAKGEVVLTNAAYRKIYHTCCEKGCVQPQ 540

Query: 497 --FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554
              +     +        + +    +         +             I   +     Y
Sbjct: 541 PECSFLALPDQHEAEFSIIIQAPKSNCSIGEHYFHVTRRA---------ISHPINQRKYY 591

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
               +DI+E K+ +  L  + + A +    ++ FLA VSHE+RTP+ A++G  E++ ++ 
Sbjct: 592 LTLFNDITELKETEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGLMEILASR- 650

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
              L +            S   +   VND+LD SKIE+ ++ L     +L + +   +  
Sbjct: 651 ---LKSSESQLLLTNAISSAERLKLHVNDILDFSKIEAQQLQLDIGLYNLADELGPLLRG 707

Query: 675 VQLYANEKRILIRTSFANN-IPRILADLRSVKQIALNILSNAIHFTPSGGQI-IISTTHT 732
            +  A  K I     ++ N +     D     QI  N+LSNAI FT  G  +  I     
Sbjct: 708 FEASAQLKEIEFDVIWSPNSLLLANLDALRFNQIVTNLLSNAIKFTDQGRVVFKIDVAPE 767

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
               + + V DTG GMT  ++E    PF Q  ++   R  GTGLG+ +   +++   GK 
Sbjct: 768 ---MLTIVVEDTGCGMTQTQIESLFVPFAQADSTITRRFGGTGLGMSIVANLIELMNGKI 824

Query: 793 YIFSTPAKGTLIEIIFPLYDTS 814
            + S   +GT I++  PL   +
Sbjct: 825 EVKSEFEQGTQIQVNLPLVTQT 846


>gi|218896059|ref|YP_002444470.1| sensor histidine kinase/response regulator [Bacillus cereus G9842]
 gi|218545392|gb|ACK97786.1| sensor histidine kinase/response regulator [Bacillus cereus G9842]
          Length = 896

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 78/341 (22%), Positives = 149/341 (43%), Gaps = 24/341 (7%)

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            +D++++            +    +  +L      T E        + +   L++  ++L
Sbjct: 395 HQDLIQQTVDNLGLTIHSIMGRMRIQTLLHESQAMTEELQVQSEELQTQAEELQMQAEEL 454

Query: 549 PFSSCYSLTMHDISEWKQEK-----NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
             ++    +  + +E K        ++L        + S +KS+FLA +SHE+RTPL +I
Sbjct: 455 RTTNEQLESRTEEAEQKTADLQITKSELEEKASELLRSSKYKSEFLANMSHELRTPLNSI 514

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +  SE+++      L +    E A  I  SG  +L ++ND+LD+SK+E+GK+++ FE  +
Sbjct: 515 LLLSEMLRENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDIIFEATN 573

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSG 722
           + +  +         A +K +      ++ IP +   D + ++QI  N+LSNA  FT  G
Sbjct: 574 ISDMAANMHQNFLHIAAQKNVEFTIEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKG 633

Query: 723 GQIIISTTHTS--------------NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
               +S                    E + + V+DTG+G+   + +   + F Q   +  
Sbjct: 634 S---VSLHFNPIETTNLSHDMQSISKEWITISVKDTGIGIAKEQHQLIFEAFQQADGATI 690

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            +  GTGLGL + K       G   + S   +G+   +  P
Sbjct: 691 RKYGGTGLGLSICKEFARLLGGWITLESNLGEGSTFTVYIP 731


>gi|206967994|ref|ZP_03228950.1| sensor histidine kinase/response regulator [Bacillus cereus AH1134]
 gi|206736914|gb|EDZ54061.1| sensor histidine kinase/response regulator [Bacillus cereus AH1134]
          Length = 896

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 78/338 (23%), Positives = 149/338 (44%), Gaps = 18/338 (5%)

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            +D++++            +    +  +L      T E        + +   L++  ++L
Sbjct: 395 HQDLIQQTVDNLGLTIHSIMGRMRIQTLLHESQAMTEELQVQSEELQTQAEELQMQAEEL 454

Query: 549 PFSSCYSLTMHDISEWKQEK-----NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
             ++    +  + +E K        ++L        + S +KS+FLA +SHE+RTPL +I
Sbjct: 455 RTTNEQLESRTEEAEQKTADLQITKSELEEKASELLRSSKYKSEFLANMSHELRTPLNSI 514

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +  SE+++      L +    E A  I  SG  +L ++ND+LD+SK+E+GK+++ FE  +
Sbjct: 515 LLLSEMLRENHDNNLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDIIFEATN 573

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSG 722
           + +  +         A +K +      ++ IP +   D + ++QI  N+LSNA  FT  G
Sbjct: 574 ISDMAANMHQNFLHIAAQKNVEFTIEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKG 633

Query: 723 GQ------IIISTTHTS-----NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
                   I  S           + + + V+DTG+G+   + +   + F Q   +   + 
Sbjct: 634 SVSLHFDSIETSNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGATIRKY 693

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            GTGLGL + K       G   + S   +G+   +  P
Sbjct: 694 GGTGLGLSICKEFARLLGGWITLESNVGEGSTFTVYIP 731


>gi|328474126|gb|EGF44931.1| hybrid sensory histidine kinase BarA [Vibrio parahaemolyticus
           10329]
          Length = 932

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 82/252 (32%), Positives = 131/252 (51%), Gaps = 10/252 (3%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  AKK A++ +  KS+FLA +SHE+RTPL  +IGF+  +   +          +Y   
Sbjct: 276 ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLSN----SQTDYLQT 331

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I++S N +L+I+ND+LD SK+E+GK+ L   P    E++ E I+L    A+EK + I   
Sbjct: 332 IEKSANNLLNIINDILDFSKLEAGKLALENIPFDFRESLEEVINLQATSAHEKGLEITLK 391

Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT----SNEEVILRVRDT 744
               IP  ++ D   ++QI  N++ N+I FT  G  I +S         + E+   VRDT
Sbjct: 392 VDPKIPPGLVGDPLRIQQILTNLVGNSIKFTERG-NIDVSVEMRSQAGDSVELQFMVRDT 450

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G++  +  +  + F Q   S   R  GTGLGL + + +V    G+  + S   +G+  
Sbjct: 451 GIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTF 510

Query: 805 EIIFPLYDTSHP 816
                L  T  P
Sbjct: 511 WFTLRLNSTEMP 522


>gi|320353312|ref|YP_004194651.1| multi-sensor signal transduction histidine kinase [Desulfobulbus
           propionicus DSM 2032]
 gi|320121814|gb|ADW17360.1| multi-sensor signal transduction histidine kinase [Desulfobulbus
           propionicus DSM 2032]
          Length = 982

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 106/826 (12%), Positives = 232/826 (28%), Gaps = 122/826 (14%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD----LLKRQNT 142
           W  D  G +   +       G  A +++G  +  +      + ++  G     +      
Sbjct: 166 WKED--GTILFFNAFAEHFFGYPAAEIVGKPINLLLPEQDFNGSDLSGLTEDIVRHPDRY 223

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
              +      +G    V +      I   + E       G  +            +    
Sbjct: 224 LTNQNENLCRDGR--RVWVHWTNKAICDDHGEVREILSVG--NNITPRKRMEEALRASQA 279

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH-----------LRMKNKVSSLTEYYAHKD 251
                         +      +                      +   ++ L    A  +
Sbjct: 280 TLEAALASMTDAVFIADTDGRLVRFNDAFAVFHKFPDKNDCPRTLAEYLAVLELSSADGE 339

Query: 252 DVLKTEKYPLLTSEESSLP-EQEDFHTINLNQYTKKQY-FGTLQNNSKESFEYLSHRNHP 309
            +       +      ++   +      +  Q     Y FG +++        +      
Sbjct: 340 PMPPENWPVMRALRGEAVSNAEYTLRRRDTTQTWMGSYSFGPIRDKRGTIIGAVVSVRDI 399

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVY-----------------------SHGNLFYANP 346
           S     +        T+                                   G +   N 
Sbjct: 400 SEQKRLEADRQRQYSTLQGINHLLAATLNCQTEQELGAICLEIVQQLTASDFGFIGEVND 459

Query: 347 SFLLLTKYKSVDD-------------------IEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
             L                             +    G   L      +++ A  P  + 
Sbjct: 460 RGLHDIAISDPGWAACSIADNGNRHQPPGNFKLHGLYGRVLLDGQSLFTNDPANHPDRIG 519

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD---TRINK 444
                    +     ++ N +    +            E      + P  V+    +  +
Sbjct: 520 FPPGHPPVETFLGVPLRQNGKVIGMVGVANRANGYTQAEQETLEALAPVIVEAFMRKRAE 579

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP--FTVFLE 502
             +     +L    EA   G    +     ++ +  +  L+G         P  +   + 
Sbjct: 580 VALRAGEERLRLAQEAAQAGSWEWDVLTGGMAWSEELWHLYGLEPGSAEPSPALWRQVVH 639

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTM 558
                 +   +   +       +       T       L    K +   +     Y   +
Sbjct: 640 PEDIQRVERTIRHAVVGGGE--INTEWRVVTSSGDCRWLMSRGKPILDDAGRATRYLGIV 697

Query: 559 HDISEWKQEKNK------LSHAKKIAEKESS---------------------------HK 585
            DI+  KQ +        L  A++  +  +                              
Sbjct: 698 IDITSRKQAEILRENEVGLRMAQQQLQVANEDLGRRVAQRTLELEETQKKFLHAEKLSAI 757

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
               A ++HE   PL  I+   + +K +    +      E         + + +++  L 
Sbjct: 758 GKLSASIAHEFNNPLQGILSVLKGLKKR---AILEAEDRELLEAAIAESDRIKELIRGLQ 814

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
           D ++  SG+  L    + +  +++  + L +    EKRI+++ +FA+N+P+I+A    +K
Sbjct: 815 DFNRPSSGRKTL----MDVHRSLNSLLLLHKSDFKEKRIVLQRNFADNLPQIMAVPDQIK 870

Query: 706 QIALNILSNAIHFT-PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764
           Q+ LN+L+NA       GG I I+T    +++V + ++DTG G+   ELE   +PF    
Sbjct: 871 QVLLNLLTNAADACHHPGGMITITT-WHDDQQVAIAIQDTGSGIGPEELELIFQPFYTSK 929

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
                  +GTGLGL ++  +V  + G+  + S P  G+   +  P+
Sbjct: 930 P----EVKGTGLGLSVSYGIVKHHGGEILVDSAPGVGSTFTVRLPI 971



 Score =  110 bits (275), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 29/305 (9%), Positives = 81/305 (26%), Gaps = 16/305 (5%)

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYK 355
           +     +             E E    + V         +   G + + N        Y 
Sbjct: 127 RVHMVLIDITQRRKTEDALQESEERYRQLVQNANSAIIRWKEDGTILFFNAFAEHFFGYP 186

Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
           + + +     L         SD + +   ++   DR     +  L          + + +
Sbjct: 187 AAEIVGKPINLLLPEQDFNGSDLSGLTEDIVRHPDRYLTNQNENLCR----DGRRVWVHW 242

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
                 +   E      +       +  +  +      L + L + +D + I + +G ++
Sbjct: 243 TNKAICDDHGEVREILSVGNNITPRKRMEEALRASQATLEAALASMTDAVFIADTDGRLV 302

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLE------QNTPSVMNHYLTEILSLDLRQTLEKIT 529
             N A +    +P ++   +    +L        +   +       + +L          
Sbjct: 303 RFNDAFAVFHKFPDKNDCPRTLAEYLAVLELSSADGEPMPPENWPVMRALRGEAVSNAEY 362

Query: 530 LGSTKEEKLLSL-RIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
               ++     +       +           +++ DISE K+ +          +  +  
Sbjct: 363 TLRRRDTTQTWMGSYSFGPIRDKRGTIIGAVVSVRDISEQKRLEADRQRQYSTLQGINHL 422

Query: 585 KSDFL 589
            +  L
Sbjct: 423 LAATL 427



 Score =  105 bits (261), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 42/276 (15%), Positives = 93/276 (33%), Gaps = 19/276 (6%)

Query: 326 VDKCPIP----FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
            D  P+     F + SHG L  AN +   +     ++ +      + +L A +       
Sbjct: 28  ADHHPLATVGWFTLDSHGRLVEANRATAHMLGL-PLETLPHRMFSACILPADQEIHAAFH 86

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
           + ++   +         RL   Q    +           A+Q       + +  +    R
Sbjct: 87  EQLL---ASGQPQECELRLLGPQ---GSVFLAYCNGTLNADQDGMP-RVHMVLIDITQRR 139

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
             +  ++    +   +++  +  I     +G IL  N      FGYP  +I+ KP  + L
Sbjct: 140 KTEDALQESEERYRQLVQNANSAIIRWKEDGTILFFNAFAEHFFGYPAAEIVGKPINLLL 199

Query: 502 EQNTPS-VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSL 556
            +   +      LTE +     + L        ++ + + +    K +            
Sbjct: 200 PEQDFNGSDLSGLTEDIVRHPDRYLTNQNENLCRDGRRVWVHWTNKAICDDHGEVREILS 259

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSD--FLA 590
             ++I+  K+ +  L  ++   E   +  +D  F+A
Sbjct: 260 VGNNITPRKRMEEALRASQATLEAALASMTDAVFIA 295



 Score = 91.6 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 42/424 (9%), Positives = 109/424 (25%), Gaps = 23/424 (5%)

Query: 51  QSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFT--WNIDAHGYLKEISEELPKTIGN 108
            S  T + +   S+ +   +            +     + +D+HG L E +      +G 
Sbjct: 2   ASTETHKKKPVDSDLSSAPATVD-PHHADHHPLATVGWFTLDSHGRLVEANRATAHMLGL 60

Query: 109 YAFKMIGMRLCDVSDILHIDPNNHI-GDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALP 167
               +              + +      LL        +  L   +G+            
Sbjct: 61  PLETLPHRMFSACILPADQEIHAAFHEQLLASGQPQECELRLLGPQGSVFLAYC--NGTL 118

Query: 168 IYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF-- 225
              ++      R   ++             +  ++++  L +         KE   I   
Sbjct: 119 NADQDGMP---RVHMVLIDITQRRKTEDALQESEERYRQLVQNANSAIIRWKEDGTILFF 175

Query: 226 -SQQSPPPHLRMKNKVSS----LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINL 280
            +             V      L          L      ++   +  L  Q +    + 
Sbjct: 176 NAFAEHFFGYPAAEIVGKPINLLLPEQDFNGSDLSGLTEDIVRHPDRYLTNQNENLCRDG 235

Query: 281 NQYTKKQYFGTLQNNSKESFEYLS----HRNHPSLSAYFDEGENLTPETVDKCPIPFFVY 336
            +         + ++  E  E LS          +       +      +       F+ 
Sbjct: 236 RRVWVHWTNKAICDDHGEVREILSVGNNITPRKRMEEALRASQATLEAALASMTDAVFIA 295

Query: 337 S-HGNLFYANPSFLLLTKYKSVDDIEI--AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393
              G L   N +F +  K+   +D     A  L+ L  +    +    +   + R+ R  
Sbjct: 296 DTDGRLVRFNDAFAVFHKFPDKNDCPRTLAEYLAVLELSSADGEPMPPENWPVMRALRGE 355

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
             ++A     + +   +   ++      ++    +       +  + +  +   + +   
Sbjct: 356 AVSNAEYTLRRRDTTQTWMGSYSFGPIRDKRGTIIGAVVSVRDISEQKRLEADRQRQYST 415

Query: 454 LCSI 457
           L  I
Sbjct: 416 LQGI 419


>gi|218705750|ref|YP_002413269.1| sensory histidine kinase AtoS [Escherichia coli UMN026]
 gi|218432847|emb|CAR13741.1| sensory histidine kinase in two-component regulatory system with
           AtoC [Escherichia coli UMN026]
          Length = 608

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 82/371 (22%), Positives = 170/371 (45%), Gaps = 28/371 (7%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            + +         I+E  +DG+  I+R+G + + N A   + GY   +++ +P+++    
Sbjct: 254 AQALRETRTLNDLIIENAADGVIAIDRQGDVTTMNPAAEVITGYQRHELVGQPYSMLF-- 311

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMH 559
              +     + + L                ++ + + L +   ++  +        +   
Sbjct: 312 -DNTQFYSPVLDTLEHGTEHV-ALEISFPGRD-RTIELSVTTSRIHNTHGEMIGALVIFS 368

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           D++  K+ + +++ A+++A        + +A V+HE+R PLTAI G+ ++++ Q    + 
Sbjct: 369 DLTARKETQRRMAQAERLAT-----LGELMAGVAHEVRNPLTAIRGYVQILRQQTSDLI- 422

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
              + EY + + +  + +  ++  LL+ S+    +    ++ VSL+  V E + LVQ   
Sbjct: 423 ---HQEYLSVVLKEIDSINKVIQQLLEFSRPRHSQ----WQQVSLNALVEETLVLVQTAG 475

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
            + R+   +   N +  I AD   +KQ+ LNIL NA+    + G+I I T   S+ +  +
Sbjct: 476 VQARVDFISELDNELNPINADRELLKQVLLNILINAVQAISARGKIRIQTWQYSDSQQAI 535

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            + D G G+     +K   PF     S      GTGLGL L++ +++A+ G   + S P 
Sbjct: 536 SIEDNGCGIDLSLQKKIFDPFFTTKAS------GTGLGLALSQRIINAHQGDIRVASLPG 589

Query: 800 KGTLIEIIFPL 810
            G    +I P+
Sbjct: 590 YGATFTLILPI 600



 Score = 40.8 bits (94), Expect = 0.98,   Method: Composition-based stats.
 Identities = 12/117 (10%), Positives = 37/117 (31%), Gaps = 6/117 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G +  ++       G    +++G     +    +    + + D L+          
Sbjct: 278 IDRQGDVTTMNPAAEVITGYQRHELVGQPYSMLF--DNTQFYSPVLDTLEHGTEHVALEI 335

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
            +P     + + +  +   I++ + E  G     I        + +    + ++  +
Sbjct: 336 SFPGRDRTIELSVTTS--RIHNTHGEMIGA--LVIFSDLTARKETQRRMAQAERLAT 388


>gi|117168614|gb|ABK32279.1| hypothetical protein [Sorangium cellulosum]
          Length = 965

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 96/750 (12%), Positives = 225/750 (30%), Gaps = 85/750 (11%)

Query: 133 IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI-----VHVN 187
           +   +        +              I+ +A PI     +       G+     +   
Sbjct: 236 LARAVASGELVRAEPVEMQRA-DGSRAIIEYSAAPIRDAAGQIVAGVVVGVDATERIRAL 294

Query: 188 RVDNDPRALGKRLDK----------KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK 237
           R +       + L +              L EI +   S+      + S        +  
Sbjct: 295 REEQRRSEQLRGLAEASLAVNSAPSLDRMLVEITERARSLIGAHQSVISMTRGQNWAQAI 354

Query: 238 NKVSSLTEYYAHKDDVLKTEKYPLLTSE-ESSLPEQEDFHTINLNQYTKKQYFGTLQNNS 296
           N VS   +Y A++    KT    + T   + + P +     +  +   +       ++  
Sbjct: 355 NAVSLSDKYAAYRGYDGKTNGSGIYTLACQQNRPLRMTQAELEAHPAWRGFGGEASRHPP 414

Query: 297 KESFEYLSHRNH---------------------------------------PSLSAYFDE 317
              +                                                 L      
Sbjct: 415 MRGWLAAPLVTRDGSNIGLIQLSDKVEGDFTGDDESILMQLAQLASVAIENARLREEALA 474

Query: 318 GENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
            E      V+   +  +          + +       +  ++    G L  +    +   
Sbjct: 475 AEKRFRSMVEATTVVVWRTGPDGHVVEDSASWRDFTGQRYEEWLGYGWLDAVHPDDRAH- 533

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
             A        + R+      RL   +    +                      G   + 
Sbjct: 534 --ANAAWRGAVASRSRYEVEYRL---RRRDGSWAHTVARGVPLLADDGSIHEWVGCNVDV 588

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI--LRK 495
            D R  +  + ++   + +I E  + G+ + +        N A  K+ G+  ++I  L +
Sbjct: 589 SDIRRAEEALRVQHQIVRTIAENATLGLLMTDARQRCSFMNPAAEKITGFTFDEIKALDR 648

Query: 496 PFTVFLEQNTPSVMNHYLTEI---LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
           P    +    P   ++ + E     +L  +   +   +   K+     +      +    
Sbjct: 649 PLHEIIHHRRPDGSHYPVEECPIDRALPRKSQEQGEDVFVHKDGSFYQVAFTASPILDGG 708

Query: 553 ---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                 + + DI+E K+ + +        E+ +     F    SH+++ PL  I   ++ 
Sbjct: 709 VPVGTVIEIRDITEQKRAEAERERLIAALERSNKELDQFAYVASHDLKAPLRGIANLTQW 768

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           I+    G +      E+ + +      +  +++ +LD S+  +G+M    E V + + ++
Sbjct: 769 IEEDLAGTIEGES-REHMSLLRGRVRRMEALIDGILDYSR--AGRMRHEVEAVDVGQVLA 825

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
           + + L+               A  +P +  +   ++Q+ +N++ NA+          +  
Sbjct: 826 DIVELIAPAPGA-----SVEVAPGLPVLRTERIPLQQVFMNLIGNALKHARRADA-RVRV 879

Query: 730 THTSNE-EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
            H          V D G G+     ++    F  +    + + EGTG+GL + K +V++ 
Sbjct: 880 GHRDAGPHHEFFVEDNGPGIAPEFHDRVWGLFQTLEA--RDKVEGTGIGLSVVKKIVESR 937

Query: 789 MGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
            G  +I S+P +G         +    P+D
Sbjct: 938 GGHIWIDSSPGQGATFRFT---WQKRDPND 964



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/317 (11%), Positives = 84/317 (26%), Gaps = 9/317 (2%)

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
           T  +  EGT       + A      +R                     A+ +  D     
Sbjct: 2   TQHFRDEGTAARGLNPMEAQAASDASRSIHSIHAL-----FTEAPTAIAVFRGPDWVIDF 56

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
            + + +              Q +P        ++  L + +         E   LL   +
Sbjct: 57  TNRLAQRLFRDRTVVGRRLFQCAPELAGSRVAEL--LEQAHGSGRAAAACELLILLDRGD 114

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
            +L E     T+             +    + + + L+ R    L+   +   +   + +
Sbjct: 115 GALAEGYFNVTLEPIPAAAGGTESVVLFAVEVTDQVLARRRIEQLAEQLEHERHKLEQII 174

Query: 327 DKCPIPFFVYSH--GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
            + P   ++     G L   N           V   +IA   +            A    
Sbjct: 175 QQMPHAVYIAEAPSGELVMGNAQGAAQLGRSFVASTDIAAYSAGYQGFHADGRPYAPHEW 234

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
            L R+  +     A    +Q    +   + +      +   + +    +  +  +     
Sbjct: 235 PLARAVASGELVRAEPVEMQRADGSRAIIEYSAAPIRDAAGQIVAGVVVGVDATERIRAL 294

Query: 445 RKMEIEVMQLCSILEAT 461
           R+ +    QL  + EA+
Sbjct: 295 REEQRRSEQLRGLAEAS 311



 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/298 (8%), Positives = 70/298 (23%), Gaps = 27/298 (9%)

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN--LFYANPSFLLLTKYKSVDDIEIAGG 365
               ++      +       + P    V+   +  + + N     L + ++        G
Sbjct: 19  EAQAASDASRSIHSIHALFTEAPTAIAVFRGPDWVIDFTNRLAQRLFRDRT------VVG 72

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN--SLAMTFIPFEKANQ 423
                 AP+L+ +   + +          AA   L  +                      
Sbjct: 73  RRLFQCAPELAGSRVAELLEQAHGSGRAAAACELLILLDRGDGALAEGYFNVTLEPIPAA 132

Query: 424 FPENMPQNGIEPEDVDTRINKRK-------MEIEVMQLCSILEATSDGIAIIN-REGIIL 475
                       E  D  + +R+       +E E  +L  I++     + I     G ++
Sbjct: 133 AGGTESVVLFAVEVTDQVLARRRIEQLAEQLEHERHKLEQIIQQMPHAVYIAEAPSGELV 192

Query: 476 STNRAVSKLFGY----PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI-TL 530
             N   +   G       +             +      H      ++   + +      
Sbjct: 193 MGNAQGAAQLGRSFVASTDIAAYSAGYQGFHADGRPYAPHEWPLARAVASGELVRAEPVE 252

Query: 531 GSTKEEKLLSLRIIIKKLPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESSH 584
               +     +      +  ++       +   D +E  +   +     +     +  
Sbjct: 253 MQRADGSRAIIEYSAAPIRDAAGQIVAGVVVGVDATERIRALREEQRRSEQLRGLAEA 310



 Score = 43.5 bits (101), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/163 (9%), Positives = 49/163 (30%), Gaps = 10/163 (6%)

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFT 498
                      +  + ++       IA+    + +I  TNR   +LF      ++ +   
Sbjct: 19  EAQAASDASRSIHSIHALFTEAPTAIAVFRGPDWVIDFTNRLAQRLF--RDRTVVGRRLF 76

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL-------LSLRIIIKKLPFS 551
               +   S +   L +           ++ +   + +         ++L  I      +
Sbjct: 77  QCAPELAGSRVAELLEQAHGSGRAAAACELLILLDRGDGALAEGYFNVTLEPIPAAAGGT 136

Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
               L   ++++    + ++    +  E E       + ++ H
Sbjct: 137 ESVVLFAVEVTDQVLARRRIEQLAEQLEHERHKLEQIIQQMPH 179


>gi|323499989|ref|ZP_08104945.1| hybrid sensory histidine kinase BarA [Vibrio sinaloensis DSM 21326]
 gi|323314955|gb|EGA68010.1| hybrid sensory histidine kinase BarA [Vibrio sinaloensis DSM 21326]
          Length = 929

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 87/341 (25%), Positives = 155/341 (45%), Gaps = 19/341 (5%)

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
           F Y +   + +P +        ++++      L + +   +             +++ + 
Sbjct: 191 FAYRLMYDVTRPISHM-----KNMVDRIRRGHLDVRIEGKMHGELDSLKNGINAMAVSLS 245

Query: 545 IKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
              +           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTPL
Sbjct: 246 EYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPL 305

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
             +IGF+  +              +Y   I++S   +L+I+ND+LD SK+E+GK+ L   
Sbjct: 306 NGVIGFTRQMLKTTLTN----SQTDYLQTIEKSAKNLLNIINDILDFSKLEAGKLALENI 361

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFT 719
           P    E++ E +SL    A+EK + +       IP  ++ D   ++Q+  N++ N+I FT
Sbjct: 362 PFDFQESLEEVVSLQATSAHEKGLELTLKIDPKIPAGLVGDSLRIQQVLTNLVGNSIKFT 421

Query: 720 PSGGQIIISTTHTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
             G  I IS    S +    E+   VRDTG+G++  +  +  + F Q   S   R  GTG
Sbjct: 422 ERG-NIDISVEMRSQKDDVVELQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTG 480

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           LGL + + +V    G+  + S   +G+       L  T  P
Sbjct: 481 LGLVITQKLVSQMGGEISLTSRLHQGSTFWFTLRLNSTDMP 521


>gi|260899636|ref|ZP_05908031.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037]
 gi|308110560|gb|EFO48100.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037]
          Length = 932

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 82/252 (32%), Positives = 131/252 (51%), Gaps = 10/252 (3%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  AKK A++ +  KS+FLA +SHE+RTPL  +IGF+  +   +          +Y   
Sbjct: 276 ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLSN----SQTDYLQT 331

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I++S N +L+I+ND+LD SK+E+GK+ L   P    E++ E I+L    A+EK + I   
Sbjct: 332 IEKSANNLLNIINDILDFSKLEAGKLALENIPFDFRESLEEVINLQATSAHEKGLEITLK 391

Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT----SNEEVILRVRDT 744
               IP  ++ D   ++QI  N++ N+I FT  G  I +S         + E+   VRDT
Sbjct: 392 VDPKIPPGLVGDPLRIQQILTNLVGNSIKFTERG-NIDVSVEMRSQAGDSVELQFMVRDT 450

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G++  +  +  + F Q   S   R  GTGLGL + + +V    G+  + S   +G+  
Sbjct: 451 GIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTF 510

Query: 805 EIIFPLYDTSHP 816
                L  T  P
Sbjct: 511 WFTLRLNSTEMP 522


>gi|255939890|ref|XP_002560714.1| Pc16g03520 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211585337|emb|CAP93022.1| Pc16g03520 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 703

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 92/539 (17%), Positives = 197/539 (36%), Gaps = 31/539 (5%)

Query: 286 KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG----ENLTPETVDKCPIPFFVYSHGN- 340
                 +        E     N         +     +          PIP  +      
Sbjct: 22  PLITTPVGEEETAPAEPNRSSNSKEKKMETPQECVGLDASLSRIYRYHPIPTLIVDKSLC 81

Query: 341 LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400
           +   + S    +     + +        +   P          +                
Sbjct: 82  VVEVSDSHCAFSGQSRDELVGTCVCDVPVHTIPAPDTPTLYGALRTAIVSEKVQILDGIH 141

Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
                ++ +   +   P  + +     + +    P+D     +++   +  +    +++ 
Sbjct: 142 V---KSKNSIYQLRITPIFEKSSLIYVVLEAQNAPQDHCVGTDEQHANMNEI-YKILVDT 197

Query: 461 TSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL 519
             D  I +++  G + + N     L GY   +I+ K F++F        ++     +   
Sbjct: 198 MKDYAIFMLDTRGNVTTWNLGAELLKGYSPSEIIGKHFSIFYSPADLD-IDKPGRGLARA 256

Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKK---LPFSSCYSLTMHDISEWKQEKNKLSHAKK 576
             +  +E       ++       ++I     L     +     D++E K  + ++     
Sbjct: 257 LRQGRMEDEGWRYRQDGSRFWANVLITPIYQLGRHMGFVKVTRDLTERKAAEQRMIV--- 313

Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
             E+ +  K+DFLA +SHE+RTP+  +     ++K+         + +EYA+ I+ S ++
Sbjct: 314 AFEESAKMKTDFLANMSHELRTPMNGMQLALAMMKDSDL----TEQQLEYASIIEDSTSV 369

Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696
           +L I+ND+LD SK+ SG  +LH + V +   +   +   +       + +      ++P+
Sbjct: 370 LLRIINDVLDYSKLSSGSFSLHSDVVEIKGILDAVMRNCRSLLKP-GVELSCLIPPDLPK 428

Query: 697 -ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE------VILRVRDTGVGMT 749
            +  D    +Q+  N+L N++ FT +G  I +STT +  E       V     D+GVG+ 
Sbjct: 429 FMRGDPLRYRQVIQNMLGNSVKFTETG-YIRVSTTFSPVESDPETYTVTTEFADSGVGIP 487

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP-AKGTLIEII 807
           +  L     PF +  +S   + +GTGLGL + K++ +   G       P  KG++    
Sbjct: 488 DCALNTLFTPFTRFADSSTRKYQGTGLGLSICKSLAELMDGTVGYRPGPQNKGSVFWFT 546



 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/114 (12%), Positives = 33/114 (28%), Gaps = 9/114 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID---PNNHIGDLLKRQNT 142
            + +D  G +   +       G    ++IG           +D   P   +   L++   
Sbjct: 203 IFMLDTRGNVTTWNLGAELLKGYSPSEIIGKHFSIFYSPADLDIDKPGRGLARALRQGRM 262

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRAL 196
              +   +  +G+  +  + +   PIY +     GF    +             
Sbjct: 263 -EDEGWRYRQDGSRFWANVLI--TPIY-QLGRHMGF--VKVTRDLTERKAAEQR 310


>gi|169334946|ref|ZP_02862139.1| hypothetical protein ANASTE_01352 [Anaerofustis stercorihominis DSM
           17244]
 gi|169257684|gb|EDS71650.1| hypothetical protein ANASTE_01352 [Anaerofustis stercorihominis DSM
           17244]
          Length = 794

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 85/368 (23%), Positives = 154/368 (41%), Gaps = 15/368 (4%)

Query: 449 IEVMQLCSILEATSDGIAIINREGI-ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
                   + E  ++     N +   +   +  +S + G   ED L           T  
Sbjct: 281 AREKMFNMMTENVNEVFLAYNLDKKKLEYLSSNLSHVLGISSEDWLN---DTKFSSPTLK 337

Query: 508 VMNHYLTEILSLDLRQTLEKITLGS-TKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQ 566
            +  Y+      D    +E+      T E     LR+            + + D SE ++
Sbjct: 338 ELIDYMDN-GKDDKLYNIERELFNPNTNETHPFRLRVYKIVEDGVKWAFMVLTDESEEQE 396

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
           +K  L  A   AE+ +  KS+FL  +SH+IRTP+ AI+G   +  +         +  + 
Sbjct: 397 KKKVLEEALITAEQANRAKSEFLTSMSHDIRTPMNAIVGMVNIAYSNLD---DKKKVADC 453

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
            + I  S   +++++  +LD+S+IESGK+ L  E  +L   + EA  + +  A EK + +
Sbjct: 454 LDKITLSSEHLMELIQGVLDMSQIESGKLELCKENFNLTSLLKEAYEIFKGQALEKGLDL 513

Query: 687 RTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT---HTSNEEVI--LR 740
                      +  D+  + QI +N+++NA+ FTP+GG + I             I  + 
Sbjct: 514 TLDMNKIKHSDVNGDMLRINQILMNLINNALKFTPAGGFVEIKAEEVYCEEEGYGIYNIS 573

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V D G+G+    ++K   PF +   S   + EG+GLGL +   ++    G   + S   K
Sbjct: 574 VNDNGIGIAPEFIDKLFDPFERAERSTVSKIEGSGLGLSIVNRLISLMNGTIDVVSEQGK 633

Query: 801 GTLIEIIF 808
           G+   +  
Sbjct: 634 GSCFTVCL 641


>gi|331656452|ref|ZP_08357414.1| phosphate regulon sensor kinase PhoR [Escherichia coli TA206]
 gi|331054700|gb|EGI26709.1| phosphate regulon sensor kinase PhoR [Escherichia coli TA206]
          Length = 350

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 67/369 (18%), Positives = 139/369 (37%), Gaps = 33/369 (8%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +  +R++   + +  S  E+  D + +   EG I   N    ++ G    +   +     
Sbjct: 6   KKRRRELGNLIKRFRSGAESLPDAVVLTTEEGGIFWCNGLAQQILGLRWPEDNGQNILNL 65

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
           L     +               +   +         + L +R++           +   D
Sbjct: 66  LRYPEFTQYL----------KTRDFSRPLNLVLNTGRHLEIRVMPYTHKQ---LLMVARD 112

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           +++  Q +                + +F A VSHE+RTPLT + G+ E++  Q       
Sbjct: 113 VTQMHQLEG--------------ARRNFFANVSHELRTPLTVLQGYLEMMDEQPLEGAVR 158

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
            +     + +      +  +V  LL +SKIE+   +L  E V +   +       Q  + 
Sbjct: 159 EKA---LHTMREQTQRMEGLVKQLLTLSKIEAAPTHLLNEKVDVPMMLRVVEREAQTLSQ 215

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
           +K+        N + ++  +   ++    N++ NA++ TP G  I +      +      
Sbjct: 216 KKQ-TFTFEIDNGL-KVSGNEDQLRSAISNLVYNAVNHTPEGTHITVRWQRVPHG-AEFS 272

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V D G G+    + +  + F ++  ++  +  G+GLGL + K  V+ +  +  I ST  K
Sbjct: 273 VEDNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHAVNHHESRLNIESTVGK 332

Query: 801 GTLIEIIFP 809
           GT    + P
Sbjct: 333 GTRFSFVIP 341


>gi|256422621|ref|YP_003123274.1| PAS/PAC sensor signal transduction histidine kinase [Chitinophaga
           pinensis DSM 2588]
 gi|256037529|gb|ACU61073.1| PAS/PAC sensor signal transduction histidine kinase [Chitinophaga
           pinensis DSM 2588]
          Length = 566

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 85/370 (22%), Positives = 164/370 (44%), Gaps = 25/370 (6%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            K++ E  ++ +I+   +DGI  ++    +L  N+   KL G    +I+ +         
Sbjct: 222 AKIKFEKSRIDTIINQMNDGIIGLDESRNLLFLNKVAEKLLGLREVEIMGQ------YAP 275

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564
             +V N  +  +L  D     E       KE       + +          + + +I+  
Sbjct: 276 DIAVNNDLMRSLLKTDSP-VKELKIFADQKESYFHLDILNVTNNEKVIGQVIVLRNIT-- 332

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
                          + +  K++F+A +SHE++TP+ +I   ++++ + R G +      
Sbjct: 333 ------------PFHELNEAKTNFIATISHELKTPIASIKMSAQLLTDTRVGAVNRE-QE 379

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           E    I    N +L I ++LL+IS++E+G + L  EPV  D  +  A + V   A +K I
Sbjct: 380 ELVKSIADDANRLLKITSELLNISQVETGHIQLKIEPVFPDIIIDNATNTVSALAQQKNI 439

Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744
            IR     +  +I+ D      +  N L+NA+ ++P  G+I ++T+   N  V   V D 
Sbjct: 440 AIRIHNNTHAHKIMTDPEKTAWVLTNFLTNAVKYSPEDGEIDLTTSIR-NNSVEFSVADH 498

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G G+    L +    + ++P + +    GTGLGL +++  ++A  G  ++ ST  +G+  
Sbjct: 499 GRGIEEKYLSRIFDRYFKVPGTPEKV--GTGLGLSISREFIEAQGGTIWVDSTLGEGSTF 556

Query: 805 EIIFPLYDTS 814
               PL+   
Sbjct: 557 GFTLPLFTAE 566


>gi|170749676|ref|YP_001755936.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium radiotolerans JCM 2831]
 gi|170656198|gb|ACB25253.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium radiotolerans JCM 2831]
          Length = 526

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 90/506 (17%), Positives = 187/506 (36%), Gaps = 34/506 (6%)

Query: 318 GENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
             +    T+D+  I  +      G +    PS + L      + +         +     
Sbjct: 28  DADGLRLTLDEAGICGWALDIPTGRVTIL-PSCIRLFGVPP-ERLTTFAETQAFVHPDDR 85

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
           +   A     L   D    +      T+  +      +      +           G+  
Sbjct: 86  AARAAAIGRALT--DGG--SYEIDFRTVHPDG-RVHWLRSRGRVQVGADGRPCRHRGVVF 140

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
              + +    ++      L SIL+   D + +I+ +  I S + A  + FGY  ++++ +
Sbjct: 141 SIHEQKQADEELRAREAHLRSILDTVPDAMIVIDEQAQIKSFSAAAVRQFGYGSDEVVGR 200

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQT--LEKITLGSTKEEKLLSLRIIIK--KLPFS 551
             ++ + +   S  + Y++  L    R+   + ++ +G  K+     + + +   +    
Sbjct: 201 NVSLLMPEPYRSQHDAYMSRYLVTGERRIIGIGRVVVGQRKDGSTFPMELSVGEMRSGGE 260

Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESS--HKSDFLARVSHEIRTPLTAIIGFSE- 608
             ++  + D++E  Q + +L   +      S      +  + ++HEI  PLTAI  + + 
Sbjct: 261 RYFTGFIRDLTERNQTETRLQELQSELVHMSRFTALGEMASTLAHEINQPLTAIASYLKG 320

Query: 609 --VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI-SKIESGKMNLHFEPVSLD 665
              +  +  GP   P   +  N           ++  L D  S+ ES           L 
Sbjct: 321 CRRLLGRMEGPEV-PLLADAVNQAADQALRAGQVIRHLRDFVSRGES-----ERHIEGLP 374

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725
           + + EA +L  + A EK + +R     + P ++A    V+Q+ LN++ NAI       + 
Sbjct: 375 KLIEEASALALVGAKEKGVRVRFDLDPDAPLVMAVRIQVQQVLLNLIRNAIEAMQDVARR 434

Query: 726 IISTTHT---SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
            ++       +   V +RV DTG G+     E+  +PF     +      G G+GL + +
Sbjct: 435 DLTVATRALPAEGLVEVRVSDTGPGIAPEIAEQLFQPFVTTKAN------GMGVGLSICR 488

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIF 808
            +V+A+ GK      P  GT      
Sbjct: 489 TIVEAHGGKIQAGPGPDGGTTFRFTL 514



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/219 (8%), Positives = 49/219 (22%), Gaps = 10/219 (4%)

Query: 241 SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE-- 298
           +    +    D   +        ++  S          +   +  +              
Sbjct: 74  AETQAFVHPDDRAARAAAIGRALTDGGSYEIDFRTVHPDGRVHWLRSRGRVQVGADGRPC 133

Query: 299 --SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYK 355
                  S              E      +D  P     +     +   + + +    Y 
Sbjct: 134 RHRGVVFSIHEQKQADEELRAREAHLRSILDTVPDAMIVIDEQAQIKSFSAAAVRQFGYG 193

Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
           S + +     L  L+  P  S ++A     L   +R  I     +   + +         
Sbjct: 194 SDEVVGRNVSL--LMPEPYRSQHDAYMSRYLVTGERRIIGIGRVVVGQRKDGSTFPM--- 248

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
                  +        G   +  +    + +++    +L
Sbjct: 249 ELSVGEMRSGGERYFTGFIRDLTERNQTETRLQELQSEL 287



 Score = 40.4 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 35/254 (13%), Positives = 73/254 (28%), Gaps = 27/254 (10%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD--LLKRQNTWYGK 146
           ID    +K  S    +  G  + +++G  +  +    +   ++      L+  +    G 
Sbjct: 173 IDEQAQIKSFSAAAVRQFGYGSDEVVGRNVSLLMPEPYRSQHDAYMSRYLVTGERRIIGI 232

Query: 147 TTLW---PIEGTNLYVPIDLA-ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
             +      +G+    P++L+         R F+GF         R   +      RL +
Sbjct: 233 GRVVVGQRKDGSTF--PMELSVGEMRSGGERYFTGF--------IRDLTERNQTETRLQE 282

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
             S L  + +  +  E           P         ++S  +        ++  + PLL
Sbjct: 283 LQSELVHMSRFTALGEMASTLAHEINQPLTA------IASYLKGCRRLLGRMEGPEVPLL 336

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS-LSAYFDEGENL 321
               +   +      +   Q  +       +  S+   E L      +   A     E  
Sbjct: 337 ADAVNQAAD----QALRAGQVIRHLRDFVSRGESERHIEGLPKLIEEASALALVGAKEKG 392

Query: 322 TPETVDKCPIPFFV 335
                D  P    V
Sbjct: 393 VRVRFDLDPDAPLV 406


>gi|152988773|ref|YP_001347467.1| virulence sensor protein BvgS [Pseudomonas aeruginosa PA7]
 gi|150963931|gb|ABR85956.1| virulence sensor protein BvgS [Pseudomonas aeruginosa PA7]
          Length = 691

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 92/379 (24%), Positives = 160/379 (42%), Gaps = 19/379 (5%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF--T 498
           +  +  +   +    ++++     ++I   +G +L+ NR          E         +
Sbjct: 51  QRTEADLSDRLALKQALVDGIPYPVSIRTLDGRLLACNRNYLDSLRMTREQARGTLLTDS 110

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM 558
            ++E     +M+     +         +          +LL +   +          L +
Sbjct: 111 DWVEGGKARLMHRQCLAVARGGTASFTDMTVRI---GGQLLEIHHWVTPYRDRQGRVLGL 167

Query: 559 ----HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E ++   +L  A + A++ +  KS FLA +SHEIRTP+ A+IG  E +  QR
Sbjct: 168 MNGWIDITERERLARQLREAMRQADEANRAKSVFLATMSHEIRTPMNAVIGILE-LVLQR 226

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
             P    R          +   +  ++ D+LD++KIESG + L  E V L E V     +
Sbjct: 227 LTPGQPERAS--LEVAYEAAGSLQLLIGDILDVAKIESGHLILTPERVRLREVVESVRRM 284

Query: 675 VQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-- 731
            +  A +K + +     +     +L D    KQ+  N++SNAI FT  G Q+ I      
Sbjct: 285 FEGLARQKGLRLGVELGDTPGCDVLIDPLRFKQVLSNLVSNAIKFTEQG-QVTIRLQEKN 343

Query: 732 --TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
                  V L V DTG+G+   +  +  +PF Q+   +     GTGLGL + + +VD   
Sbjct: 344 LDEGRAVVRLAVEDTGIGIAPADQARLFQPFIQVAKGRT-VQGGTGLGLAICRKLVDLMG 402

Query: 790 GKFYIFSTPAKGTLIEIIF 808
           G   + S P KGTL+ +  
Sbjct: 403 GDIEMHSEPGKGTLVSLDL 421


>gi|312113023|ref|YP_004010619.1| integral membrane sensor signal transduction histidine kinase
           [Rhodomicrobium vannielii ATCC 17100]
 gi|311218152|gb|ADP69520.1| integral membrane sensor signal transduction histidine kinase
           [Rhodomicrobium vannielii ATCC 17100]
          Length = 508

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 96/251 (38%), Positives = 153/251 (60%)

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
             I E ++ K     A+  AE  +  KS FLA +SHE+RTPL AI+GFSE+IK++  GP+
Sbjct: 223 RLIEELERAKAASDEARVRAEAANVAKSKFLANMSHELRTPLNAIMGFSEMIKDEVLGPI 282

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
            N  Y  YA  I  SG+ +L ++N++LD+S+IE+G+  L  +P+ +     E++ L+++ 
Sbjct: 283 DNENYRSYAADIHESGSHLLKLINEILDLSRIEAGRYELTEKPIDVAATALESLRLMRID 342

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738
           A++K + + T F  ++PRI+AD R+++QI LN+LSNAI FTP  G I +      + E +
Sbjct: 343 AHQKNLRVVTDFRPDMPRIMADERALRQICLNLLSNAIKFTPDSGLIAVRAGILPSGEAV 402

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           L VRD G G+   E+ + ++ FGQ   + +    GTGLGLP+   + + + G+F + S  
Sbjct: 403 LSVRDNGPGIPEEEISQVLRAFGQGSLALKTGESGTGLGLPIVSGLAELHGGRFELRSKL 462

Query: 799 AKGTLIEIIFP 809
             GT   +I P
Sbjct: 463 GVGTEASLILP 473


>gi|172037421|ref|YP_001803922.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
           51142]
 gi|171698875|gb|ACB51856.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
           51142]
          Length = 418

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 74/253 (29%), Positives = 137/253 (54%), Gaps = 2/253 (0%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E KQ+++++       ++ S  +S FLA +SHE+RTP+ AI+GFS+++  Q   PL + +
Sbjct: 167 ELKQQQDQIHLKNLQLQEASRRQSQFLATISHELRTPMNAIMGFSQLLLRQYPDPLTD-Q 225

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
            I+    I  +   +L ++N++LD SK+E G+M+L+     LD  V   +  +      K
Sbjct: 226 QIDIIQRIFNNSQNLLTLINEVLDFSKLEIGQMDLNIGKFDLDILVRFTVEELSSLTLNK 285

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
            + +         +++ D   +K+I +N+LSNAI FTP+G +I +     + E + + + 
Sbjct: 286 NLSLNVDIHLANNQVINDKNFLKRILINLLSNAIKFTPAG-EIWVKVWEMNPERIAITIE 344

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTGVG+    L+    PF Q+  +   +  GTGLGL +  ++V    G+ ++ S   +G+
Sbjct: 345 DTGVGIAPEHLKTIFTPFHQVDQTLTRQHLGTGLGLAIVYSLVKMMQGEIHVTSQLEQGS 404

Query: 803 LIEIIFPLYDTSH 815
           +  +  P   +S+
Sbjct: 405 VFRVEIPRRLSSN 417


>gi|220906228|ref|YP_002481539.1| ATP-binding region ATPase domain-containing protein [Cyanothece sp.
            PCC 7425]
 gi|219862839|gb|ACL43178.1| ATP-binding region ATPase domain protein [Cyanothece sp. PCC 7425]
          Length = 2051

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 121/689 (17%), Positives = 242/689 (35%), Gaps = 79/689 (11%)

Query: 171  RNREFSGFRGFGIVHVNRVDND-------PRALGKRLDKKFSHLHEIKKGHSSVEKEKYD 223
              R     RG+  V +    +        P +      + F+ + + +    +       
Sbjct: 1162 AERYIDATRGWFTVAIFHFYDALVHLARYPASSPLEKQQIFNRVIDRQNQMRNWANHAPV 1221

Query: 224  IFSQQSPPPHLRMKNKVSSL-TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQ 282
             F  +           +         +   +    ++  +  E  +      F+     +
Sbjct: 1222 NFQHKFDLVEAEKARILGDYWQAMELYDRAIAGAREHGYIQEEALANELAAAFYLSQGRE 1281

Query: 283  YTKKQYF-GTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNL 341
               + Y         +       +       A+ D+        V+  P+P +  S G +
Sbjct: 1282 KVAQTYLIEAYYGYLRWGANAKVNDLAARYPAFLDQILRRDANWVETLPVPSYA-STGEV 1340

Query: 342  FYANPSFLLLTKYKSVDDIEIAGGLSTLL--DAPKLSDNNAIKPVMLYRSDRTCIAASAR 399
                 +F L T  K+   +     L  LL      + +N   +   L       +   A 
Sbjct: 1341 ----KAFDLATVMKAAQALSGEIVLGDLLTKLMQIVLENAGAEKGFLLLEKGGKLWIEA- 1395

Query: 400  LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459
               +  +         +  ++     +  P  GI           R  E           
Sbjct: 1396 SGAVGIDPITVQQSIPLAAQETIAPGQACPLMGILLPLSVVNYVARTREA---------- 1445

Query: 460  ATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH---YLTEI 516
                          I+ +N   ++LF      + +KP +V               YL   
Sbjct: 1446 --------------IVLSNATSAELFAADAYILAQKPKSVLCAPILHQGKLTGMLYLENN 1491

Query: 517  LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW-----------K 565
            L+           L     +  +S+                   ++E            +
Sbjct: 1492 LTTGAFTQDRLEVLQLLAAQAAISIENARLYADLEEANHTLEAKVTERTIELEEKNLHLQ 1551

Query: 566  QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
            QE  +   A++ A+  S  KS+FLA +SHE+RTPL  I+G+S+++   +       +   
Sbjct: 1552 QEIQERQRAEEAAKVASRAKSEFLANMSHELRTPLNGILGYSQILSKNK---ALTEQQQN 1608

Query: 626  YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
              N I + G  +L ++ND+LD+SKIE+ KM L+    +L   +   + + ++ A +K+I 
Sbjct: 1609 GLNVIHQCGEYLLTLINDVLDLSKIEARKMELYPSTFNLPHFLENMLEICRIRATQKQIS 1668

Query: 686  IRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS----------- 733
            +     + +P+ + AD + ++Q+ LN++ NAI FTP+G  +     +             
Sbjct: 1669 LNYEILSPLPQFVHADEKRLQQVLLNLVGNAIKFTPAG-IVTFKVGYVQHWPSAPAEQSS 1727

Query: 734  ------NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
                    ++  ++ DTG+G++  +LE+  +PF +     Q   EGTGLGL +++ +V  
Sbjct: 1728 PNQAVAQSKIRFQIEDTGIGISPEQLEQIFQPFHRGGEPGQR-TEGTGLGLAISRQLVQL 1786

Query: 788  NMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
              G+  + S   +G+L  +   L + S P
Sbjct: 1787 MGGEIQVKSILGQGSLFRLDLELPE-SQP 1814


>gi|187923860|ref|YP_001895502.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia phytofirmans
           PsJN]
 gi|187715054|gb|ACD16278.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia phytofirmans
           PsJN]
          Length = 657

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 86/482 (17%), Positives = 172/482 (35%), Gaps = 27/482 (5%)

Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIA------ASARLHTIQWNRE 408
            + + +   G    +LD         +      R++   I        +     I+  R 
Sbjct: 45  AARERLAGGGPDLLVLDYQLNGPETGLDFFRRLRAEGVRIPAILVTGFTDESRVIEALRA 104

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468
               +     +  +  PE + +   +            +        ++ EA    +   
Sbjct: 105 GVSDVVPKSGDYLDYLPEAVERVLSQVRLQRASDEALLLRDREQHYRTLSEALPHLVMTC 164

Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528
           N  G     ++      G          +   +  +    +     + +S        + 
Sbjct: 165 NATGDCDFLSKQWYDYTGLAESCSYGLAWLDAVHPDDREKIRRSWLKTVS-GDAGDYRQE 223

Query: 529 TLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSH-------AKKI 577
                 + +     + +  +  +      +  +  DI   ++   +          A++ 
Sbjct: 224 LRIRRHDGEYRWFDLRVVAMRDAEGNVSKWFGSCTDIHSQREAIEERERLLASEQAARQT 283

Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
           AE+ +  K  FLA +SHE+RTPLT ++  + V++     P    +       I R+  L 
Sbjct: 284 AEEANRAKDRFLAMLSHELRTPLTPVLAGASVLE---MIPGLPDQARASVRMIRRNVELE 340

Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697
             +++DLLD++++ +GK+ L  E V + + +   + L +     K+  +          +
Sbjct: 341 ARLIDDLLDLTRVANGKLRLSLETVDVHDVIDSVLELFRSEIQVKQQDVHVHKDAQHHYV 400

Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757
           LAD   ++Q+  N++ NA  FTP GG I + T       V + V DTG+G+   ++ K  
Sbjct: 401 LADRARLQQMLWNLIRNAAKFTPDGGHIYVRTR-DERMHVQISVEDTGIGIEPDQIGKLF 459

Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK--GTLIEIIFPLYDTSH 815
             F Q   +   +  G GLGL + KA+ D + G     S P    G    I  P    + 
Sbjct: 460 NAFEQGNQNMTRQFGGLGLGLAITKALTDVHGGTVTAQS-PGAHCGATFAITLP--TAAA 516

Query: 816 PH 817
           P 
Sbjct: 517 PE 518



 Score = 48.5 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/213 (8%), Positives = 46/213 (21%), Gaps = 4/213 (1%)

Query: 98  ISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNL 157
           +S++     G       G+   D       +            +    +  L        
Sbjct: 173 LSKQWYDYTGLAESCSYGLAWLDAVHPDDREKIRRSWLKTVSGDAGDYRQELRIRRHDGE 232

Query: 158 YVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSV 217
           Y   DL  + +       S  + FG         +     +RL        +  +  +  
Sbjct: 233 YRWFDLRVVAMRDAEGNVS--KWFGSCTDIHSQREAIEERERLLASEQAARQTAEEANRA 290

Query: 218 EKE--KYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDF 275
           +           ++P   +     V  +      +           +  E   + +  D 
Sbjct: 291 KDRFLAMLSHELRTPLTPVLAGASVLEMIPGLPDQARASVRMIRRNVELEARLIDDLLDL 350

Query: 276 HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
             +   +         + +      E       
Sbjct: 351 TRVANGKLRLSLETVDVHDVIDSVLELFRSEIQ 383


>gi|331673738|ref|ZP_08374501.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           TA280]
 gi|331069011|gb|EGI40403.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           TA280]
          Length = 612

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 82/371 (22%), Positives = 170/371 (45%), Gaps = 28/371 (7%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            + +         I+E  +DG+  I+R+G + + N A   + GY   +++ +P+++    
Sbjct: 258 AQALRETRTLNDLIIENAADGVIAIDRQGDVTTMNPAAEVITGYQRHELVGQPYSMLF-- 315

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMH 559
              +     + + L                ++ + + L +   ++  +        +   
Sbjct: 316 -DNTQFYSPVLDTLEHGTEHV-ALEISFPGRD-RTIELSVTTSRIHNTHGEMIGALVIFS 372

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           D++  K+ + +++ A+++A        + +A V+HE+R PLTAI G+ ++++ Q    + 
Sbjct: 373 DLTARKETQRRMAQAERLAT-----LGELMAGVAHEVRNPLTAIRGYVQILRQQTSDLI- 426

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
              + EY + + +  + +  ++  LL+ S+    +    ++ VSL+  V E + LVQ   
Sbjct: 427 ---HQEYLSVVLKEIDSINKVIQQLLEFSRPRHSQ----WQQVSLNALVEETLVLVQTAG 479

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
            + R+   +   N +  I AD   +KQ+ LNIL NA+    + G+I I T   S+ +  +
Sbjct: 480 VQARVDFISELDNELNPINADRELLKQVLLNILINAVQAISARGKIRIQTWQYSDSQQAI 539

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            + D G G+     +K   PF     S      GTGLGL L++ +++A+ G   + S P 
Sbjct: 540 SIEDNGCGIDLSLQKKIFDPFFTTKAS------GTGLGLALSQRIINAHQGDIRVASLPG 593

Query: 800 KGTLIEIIFPL 810
            G    +I P+
Sbjct: 594 YGATFTLILPI 604



 Score = 40.8 bits (94), Expect = 0.97,   Method: Composition-based stats.
 Identities = 12/117 (10%), Positives = 37/117 (31%), Gaps = 6/117 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G +  ++       G    +++G     +    +    + + D L+          
Sbjct: 282 IDRQGDVTTMNPAAEVITGYQRHELVGQPYSMLF--DNTQFYSPVLDTLEHGTEHVALEI 339

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
            +P     + + +  +   I++ + E  G     I        + +    + ++  +
Sbjct: 340 SFPGRDRTIELSVTTS--RIHNTHGEMIGA--LVIFSDLTARKETQRRMAQAERLAT 392


>gi|88857797|ref|ZP_01132440.1| hypothetical protein PTD2_04516 [Pseudoalteromonas tunicata D2]
 gi|88820994|gb|EAR30806.1| hypothetical protein PTD2_04516 [Pseudoalteromonas tunicata D2]
          Length = 1235

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 72/252 (28%), Positives = 127/252 (50%), Gaps = 12/252 (4%)

Query: 563 EWKQEKN--KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           E K  +   +L  A+K AE  S  KS+FLA +SHE+RTP+ AIIG S+++   +     N
Sbjct: 458 EQKVSERTSELVEARKKAESASKAKSNFLAHMSHEVRTPMNAIIGLSQLMLKTQL----N 513

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
            R  ++   +  S +++L+ +ND+LD SKIE+ K+ L + P  + + +    ++    A 
Sbjct: 514 KRQRDFMEKVLSSSDVLLNTLNDVLDYSKIEANKLTLDYTPFDIRDVLRRVTNISAYKAQ 573

Query: 681 EKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE--- 736
            K + +       +P + + D   + QI +N+ SNA+ FT  G ++II            
Sbjct: 574 YKGVELLLDIDQKVPFQWIGDPIRLGQILINLASNAVKFTEQG-EVIIRVKLLEQHNQQS 632

Query: 737 -VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            +   V DTG+G+    +     PF Q+ +S   +  GTGLGL +++ + +   G+ ++ 
Sbjct: 633 TLRFSVIDTGIGIEQERINLLFTPFMQMDSSITRKYGGTGLGLAISRQLTELMGGRIWVE 692

Query: 796 STPAKGTLIEII 807
           S    G+     
Sbjct: 693 SQLNVGSQFHFT 704


>gi|228899677|ref|ZP_04063929.1| hypothetical protein bthur0014_8960 [Bacillus thuringiensis IBL
           4222]
 gi|228859957|gb|EEN04365.1| hypothetical protein bthur0014_8960 [Bacillus thuringiensis IBL
           4222]
          Length = 896

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 78/341 (22%), Positives = 150/341 (43%), Gaps = 24/341 (7%)

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            +D++++            +    +  +L      T E        + +   L++  ++L
Sbjct: 395 HQDLIQQTVDNLGLTIHSIMGRMRIQTLLHESQAMTEELQVQSEELQTQAEELQMQAEEL 454

Query: 549 PFSSCYSLTMHDISEWKQEK-----NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
             ++    +  + +E K        ++L        + S +KS+FLA +SHE+RTPL +I
Sbjct: 455 RTTNEQLESRTEEAEQKTADLQITKSELEEKASELLRSSKYKSEFLANMSHELRTPLNSI 514

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +  SE+++      L +    E A  I  SG  +L ++ND+LD+SK+E+GK+++ FE  +
Sbjct: 515 LLLSEMLRENHDNNLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDIIFEATN 573

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSG 722
           + +  +         A +K +      ++ IP +   D + ++QI  N+LSNA  FT  G
Sbjct: 574 ISDMAANMHQNFLHIAAQKNVEFTIEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKG 633

Query: 723 GQIIISTTHTS--------------NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
               +S    S               + + + V+DTG+G+   + +   + F Q   +  
Sbjct: 634 S---VSLHFDSIETTNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGATI 690

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            +  GTGLGL + K       G   + S   +G+   +  P
Sbjct: 691 RKYGGTGLGLSICKEFARLLGGWITLESNVGEGSTFTVYIP 731


>gi|229108572|ref|ZP_04238184.1| hypothetical protein bcere0018_8540 [Bacillus cereus Rock1-15]
 gi|228674827|gb|EEL30059.1| hypothetical protein bcere0018_8540 [Bacillus cereus Rock1-15]
          Length = 896

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 78/341 (22%), Positives = 150/341 (43%), Gaps = 24/341 (7%)

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            +D++++            +    +  +L      T E        + +   L++  ++L
Sbjct: 395 HQDLIQQTVDNLGLTIHSIMGRMRIQTLLHESQAMTEELQVQSEELQTQAEELQMQAEEL 454

Query: 549 PFSSCYSLTMHDISEWKQEK-----NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
             ++    +  + +E K        ++L        + S +KS+FLA +SHE+RTPL +I
Sbjct: 455 RTTNEQLESRTEEAEQKTADLQITKSELEEKASELLRSSKYKSEFLANMSHELRTPLNSI 514

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +  SE+++      L +    E A  I  SG  +L ++ND+LD+SK+E+GK+++ FE  +
Sbjct: 515 LLLSEMLRENHDNNLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDIIFEATN 573

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSG 722
           + +  +         A +K +      ++ IP +   D + ++QI  N+LSNA  FT  G
Sbjct: 574 ISDMAANMHQNFLHIAAQKNVEFTIEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKG 633

Query: 723 GQIIISTTHTS--------------NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
               +S    S               + + + V+DTG+G+   + +   + F Q   +  
Sbjct: 634 S---VSLHFDSIETTNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGATI 690

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            +  GTGLGL + K       G   + S   +G+   +  P
Sbjct: 691 RKYGGTGLGLSICKEFARLLGGWITLESNVGEGSTFTVYIP 731


>gi|186681899|ref|YP_001865095.1| response regulator receiver sensor signal transduction histidine
           kinase [Nostoc punctiforme PCC 73102]
 gi|186464351|gb|ACC80152.1| response regulator receiver sensor signal transduction histidine
           kinase [Nostoc punctiforme PCC 73102]
          Length = 444

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 76/247 (30%), Positives = 138/247 (55%), Gaps = 2/247 (0%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E ++++ ++        + S  KS FLA +SHE+RTP+ AIIGFS+++   +FG L N +
Sbjct: 152 ELERQQEQIQMQNFKLLEASRLKSHFLATMSHELRTPMNAIIGFSQILLRPKFGQLSN-Q 210

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             +    I  +G  +L ++N++LD SK+E G+++L  E   + + ++ A+  ++  A+ K
Sbjct: 211 QADMVERILNNGKHLLMLLNEVLDFSKLEIGRLDLKAEIFDVSKVINLAVGEMRSLADAK 270

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           ++ +        P I  D   ++QI  N+LSNAI FT SG +I +        +V + VR
Sbjct: 271 KLSLLVQNDLQNPFIFNDPVRIRQILTNLLSNAIKFTESG-EIWVEVKELPTNQVAIIVR 329

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG+G+ + + ++  + F Q+  +   +  GTGLGL +  ++V    GK ++ S    G+
Sbjct: 330 DTGIGIASRDFKRIFEAFRQVDQTITRKYPGTGLGLAIVDSLVRMMGGKIFLESKLGIGS 389

Query: 803 LIEIIFP 809
           + +I  P
Sbjct: 390 MFKIELP 396


>gi|320178807|gb|EFW53770.1| Sensory histidine kinase AtoS [Shigella boydii ATCC 9905]
          Length = 608

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 85/371 (22%), Positives = 171/371 (46%), Gaps = 28/371 (7%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            + +         I+E  +DG+  I+R+G + + N A   + GY   +++ +P+++    
Sbjct: 254 AQALRETRTLNDLIIENAADGVIAIDRQGDVTTMNPAAEVITGYQRHELVGQPYSMLF-- 311

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMH 559
           +     +  L  +        LE    G     + + L +   ++  +        +   
Sbjct: 312 DNTQFYSPVLDTLKHGTEHVALEISFPGRD---RTIELSVTTSRIHNTHGEMIGALVIFS 368

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           D++  K+ + +++ A+++A        + +A V+HE+R PLTAI G+ ++++ Q    + 
Sbjct: 369 DLTARKETQRRMAQAERLAT-----LGELMAGVAHEVRNPLTAIRGYVQILRQQTSDLI- 422

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
              + EY + + +  + +  ++  LL+ S+    +    ++ VSL+  V E + LVQ   
Sbjct: 423 ---HQEYLSVVLKEIDSINKVIQQLLEFSRPRHSQ----WQQVSLNALVEETLVLVQTAG 475

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
            + R+   +   N +  I AD   +KQ+ LNIL NA+    + G+I I T   S+ +  +
Sbjct: 476 VQARVDFISELDNELSPINADRELLKQVLLNILINAVQAISARGKIRIQTWQYSDSQQAI 535

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            + D G G+     +K   PF     S      GTGLGL L++ +++A+ G   + S P 
Sbjct: 536 SIEDNGCGIDLSLQKKIFDPFFTTKAS------GTGLGLALSQRIINAHQGDIRVASLPG 589

Query: 800 KGTLIEIIFPL 810
            G    +I P+
Sbjct: 590 YGATFTLILPI 600



 Score = 40.0 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 13/117 (11%), Positives = 37/117 (31%), Gaps = 6/117 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G +  ++       G    +++G     +    +    + + D LK          
Sbjct: 278 IDRQGDVTTMNPAAEVITGYQRHELVGQPYSMLF--DNTQFYSPVLDTLKHGTEHVALEI 335

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
            +P     + + +  +   I++ + E  G     I        + +    + ++  +
Sbjct: 336 SFPGRDRTIELSVTTS--RIHNTHGEMIGA--LVIFSDLTARKETQRRMAQAERLAT 388


>gi|229524439|ref|ZP_04413844.1| BarA sensory histidine kinase [Vibrio cholerae bv. albensis VL426]
 gi|229338020|gb|EEO03037.1| BarA sensory histidine kinase [Vibrio cholerae bv. albensis VL426]
          Length = 927

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 83/317 (26%), Positives = 146/317 (46%), Gaps = 14/317 (4%)

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568
           ++      L + +   +        K    +++ +    +           D+ E  ++ 
Sbjct: 211 VDRIRRGHLDVRIEGKMHGELDTLKKGINAMAVSLSEYHVEMQHSIDQATSDLRETLEQL 270

Query: 569 N----KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
                +L  AKK A++ +  KS+FLA +SHE+RTPL  +IGF+  +   +          
Sbjct: 271 EIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLTN----SQA 326

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           +Y   I++S N +L I+ND+LD SK+E+GK+ L   P    E + E ++L    A+EK +
Sbjct: 327 DYLQTIEKSANNLLTIINDILDFSKLEAGKLALENIPFEFQEVLEEVVNLQATSAHEKGL 386

Query: 685 LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT----SNEEVIL 739
            I       IPR ++ D   ++Q+  N++ N+I FT  G  I +S           ++  
Sbjct: 387 EITLKIDPKIPRGVVGDPLRIQQVLTNLVGNSIKFTERG-NIDVSVEMRALRDDVIDLQF 445

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            VRDTG+G++  +  +  + F Q   S      GTGLGL + + +V    G+  + S   
Sbjct: 446 MVRDTGIGISERQQAQLFQAFSQADASISRCYGGTGLGLVITQKLVSHMGGEISLTSRLH 505

Query: 800 KGTLIEIIFPLYDTSHP 816
           +G+       L+ T  P
Sbjct: 506 QGSTFWFTLRLHTTELP 522


>gi|94985371|ref|YP_604735.1| PAS/PAC sensor signal transduction histidine kinase [Deinococcus
           geothermalis DSM 11300]
 gi|94555652|gb|ABF45566.1| PAS/PAC sensor signal transduction histidine kinase [Deinococcus
           geothermalis DSM 11300]
          Length = 941

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 108/818 (13%), Positives = 234/818 (28%), Gaps = 96/818 (11%)

Query: 49  FEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGN 108
                 T    +S +      +E   +F  I  +  F    DA G ++ ++  L +  G 
Sbjct: 158 ERAEEATRTLAQSRARLERSRAEFEAIFQAIQDSAAF---TDAAGRVQMVNPALTEQFGY 214

Query: 109 YAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPI 168
               + G  L  +          H+ + L+   T+   TT +           +     +
Sbjct: 215 SPEALAGEPLARL----------HLDERLEGHTTFRALTTPYRRA-DGSVFSGEAQRSEV 263

Query: 169 YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228
                E  G     +V       +     +  +++   + +       V      +    
Sbjct: 264 LGPRGEVLGL--LEVVRDVTDRVEAERAVQLGERRSRAVLDAIPHILWVSDPAGQVTYVN 321

Query: 229 SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288
           +       ++ V                       +   +  E         +       
Sbjct: 322 AQHRERLGRDYV--RERVAPEDRATYARMWEEAYATGRRTQCEVRLLVGEQGSPRWFVLR 379

Query: 289 FGTLQNNSKESFEYLSHR----NHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFY 343
              +   +    E+++      +           E      ++  P   ++    G   Y
Sbjct: 380 VAPITGEAGNVTEWVASATDIHDRLVAERLAQRSEERYRGVLESMPQIVWLTDPQGQPTY 439

Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403
            N  +                       +    ++ A        +        A  H +
Sbjct: 440 FNRRWEEYVGQDRA---------GYGFLSLVHPEDRADYQARWAAAVSAEHPFEAE-HRL 489

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK---MEIEVMQLCSILEA 460
                             +   + +   G   +  D    +     +     QL +    
Sbjct: 490 LGADGRYRTFVTRGLPVRDAAGQVLEWVGTSTDVDDQMYAEAASRLLADVSEQLSA---R 546

Query: 461 TSDGIAIINREGI-----ILSTNRAVSKLFGYPVED---ILRKPFTVFLEQNTPSVMNHY 512
             D +A            I       + L+G P E       +     +      +    
Sbjct: 547 AEDPLASRGASYRAALDLITERLAEGAGLWGTPPELPLLATSRIDFQSVSPMLRQLAREA 606

Query: 513 LTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM---------HDI 561
           + +++  +    ++     L          L  +I +                    HD+
Sbjct: 607 IQQVVRSEESLFVQASDEPLLHEVNASGAVLYPLIGRDGAVRGVLGLTYRQPPADRDHDL 666

Query: 562 SEW-----------------------------KQEKNKLSHAKKIAEKESSHKSDFLARV 592
           +                               +  + ++       +  +     F   V
Sbjct: 667 AHELAKRFATALDNDALRLEAEEAQANLQALNQSLEERVVLRTLELQDANRELEAFSYSV 726

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SH++RTPL  I+GF ++++    G L  P+   Y + +  +   +  +++DLL+ S++  
Sbjct: 727 SHDLRTPLRHIVGFGDLLRKDAAGHLT-PKGERYLSVMTDAAERMSQLIDDLLEFSRM-- 783

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712
           G+  L   PV L   V E    ++     + +         +P +  D   + Q+  N+L
Sbjct: 784 GRQELRRGPVDLSAVVREVWQNLEPDRAGRNVQFDL---GPLPTVQGDAALLTQVFANLL 840

Query: 713 SNAIHFTPSGGQIIIST-THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           SNA+ +T +  Q  +S     S +EV + VRD GVG      +K    F ++   +    
Sbjct: 841 SNALKYTRTREQAQVSVMAQESPQEVTVTVRDNGVGFDPRYADKLFGVFQRLH--RAEEF 898

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           EGTG+GL   + +V  + G+    + P +G    +  P
Sbjct: 899 EGTGIGLANVRRIVTRHGGRVRAEAVPGQGAAFSVTLP 936



 Score = 99.7 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 41/445 (9%), Positives = 104/445 (23%), Gaps = 32/445 (7%)

Query: 139 RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
            ++            G+   +   +  +   S  R   G   F  V           L  
Sbjct: 2   TESCRRDGILRARASGSPQ-ISCPVPLVQRGSDGRRLPGMLLFLPVREGERLPGLVYLAL 60

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
           R D+  + L           +    + + Q       +K  +     +          E 
Sbjct: 61  RTDELLAGLMPPDAMPGVTVRV---LLNGQPLTSETPLKPAIFRERAHVNAAGARWDLEF 117

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
               +    +  +      +         +  T            + R      A  +  
Sbjct: 118 TAPSSFGHDAGADVPVVVLVTGLLVAGLVFLLTQAQVRALERAEEATRTLAQSRARLERS 177

Query: 319 ENLTPETVDKCPI-PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
                           F  + G +   NP+      Y              L +  +   
Sbjct: 178 RAEFEAIFQAIQDSAAFTDAAGRVQMVNPALTEQFGYSPEALAGEPLARLHLDERLEGHT 237

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
                     R+D +  +  A+   +                      E +    +  + 
Sbjct: 238 TFRALTTPYRRADGSVFSGEAQRSEV-----------------LGPRGEVLGLLEVVRDV 280

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
            D    +R +++   +  ++L+A    + + +  G +   N    +  G           
Sbjct: 281 TDRVEAERAVQLGERRSRAVLDAIPHILWVSDPAGQVTYVNAQHRERLGRDY-------V 333

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLE-KITLGSTKEEKLLSLRIIIKKLPFSS--CY 554
              +     +       E  +   R   E ++ +G     +   LR+        +   +
Sbjct: 334 RERVAPEDRATYARMWEEAYATGRRTQCEVRLLVGEQGSPRWFVLRVAPITGEAGNVTEW 393

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAE 579
             +  DI +    +     +++   
Sbjct: 394 VASATDIHDRLVAERLAQRSEERYR 418



 Score = 73.1 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/292 (9%), Positives = 70/292 (23%), Gaps = 28/292 (9%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
           P             P  +   P+       G ++ A  +  LL      D +        
Sbjct: 24  PVPLVQRGSDGRRLPGMLLFLPVREGERLPGLVYLALRTDELLAGLMPPDAMPGVTVRVL 83

Query: 369 LLDAPKLSD----NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
           L   P  S+        +      +            +   +   +     +        
Sbjct: 84  LNGQPLTSETPLKPAIFRERAHVNAAGARWDLEFTAPSSFGHDAGADVPVVVLVTGLLVA 143

Query: 425 PENMPQNGIEPEDVDTRIN--------KRKMEIEVMQLCSILEATSDGIAIINREGIILS 476
                    +   ++            + ++E    +  +I +A  D  A  +  G +  
Sbjct: 144 GLVFLLTQAQVRALERAEEATRTLAQSRARLERSRAEFEAIFQAIQDSAAFTDAAGRVQM 203

Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
            N A+++ FGY  E +  +P                                T     + 
Sbjct: 204 VNPALTEQFGYSPEALAGEPLARLHLDERLE------------GHTTFRALTTPYRRADG 251

Query: 537 KLLSLRI----IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
            + S       ++            + D+++  + +  +   ++ +      
Sbjct: 252 SVFSGEAQRSEVLGPRGEVLGLLEVVRDVTDRVEAERAVQLGERRSRAVLDA 303


>gi|11465858|ref|NP_054002.1| ORF26 [Porphyra purpurea]
 gi|1723329|sp|P51392|YCF26_PORPU RecName: Full=Uncharacterized sensor-like histidine kinase ycf26
 gi|1276858|gb|AAC08278.1| hypothetical chloroplast ORF 26 [Porphyra purpurea]
          Length = 656

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 84/389 (21%), Positives = 170/389 (43%), Gaps = 37/389 (9%)

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
            + N  K+  E  +L +++   +DG  +++++  ++  NR   + FG+  ++I       
Sbjct: 279 EQQNVEKLTSEKAKLETLVSTIADGAILLDKDLRVILVNRTAIENFGWEGKNIAGSIIVD 338

Query: 500 FLEQNTPSVMNHYLTEI-----LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-- 552
           +L ++    +   L +I     L   + +T E         +K   + +        S  
Sbjct: 339 YLPEDINQQLFPILNDIIRKNFLEQSICETQEICIKLQKNYKKTFRVLLTTVLDHKYSIL 398

Query: 553 -CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
              ++T+ D ++                + +  K+ F++ VSHE+RTPL  I  F E + 
Sbjct: 399 KGIAMTIQDRTQ--------------EVELNEIKNQFISNVSHELRTPLFNIRSFLETLY 444

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
            +    L + + +E+    ++    +  +VND+LD+S++ES +     +P  L  AV + 
Sbjct: 445 -EYHDSLDDSQKLEFLAIANKETGRLTRLVNDVLDLSRLESDQ-EYTLQPTDLVSAVEQT 502

Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
           I   QL A +KRI +      N+  +L +   + QI  N++ N++ FT   G II+    
Sbjct: 503 IRTYQLSAKDKRIDLHIDIEQNLQCVLGNYNLILQILANLVVNSLKFTHPNGIIILRAYT 562

Query: 732 TSN------------EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
             +            ++V + + D G+G++    E+    F +I N      EGTGLGL 
Sbjct: 563 VDDLKTETEVQHFNSQKVRVEICDNGIGISRKNQERIFARFLRIEN-YVHTLEGTGLGLS 621

Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           + K ++  +  + +++S    G+      
Sbjct: 622 IVKNIIQKHNSEIHLYSELKNGSCFFFDL 650


>gi|149908724|ref|ZP_01897385.1| hypothetical two-component sensor [Moritella sp. PE36]
 gi|149808266|gb|EDM68205.1| hypothetical two-component sensor [Moritella sp. PE36]
          Length = 768

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 79/250 (31%), Positives = 132/250 (52%), Gaps = 8/250 (3%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           +   +    +L  AK+ AE  +  KS+FLA +SHEIRTP+  +IG + +++    G    
Sbjct: 220 VKHTRHHYRELETAKRQAEDANLKKSEFLANMSHEIRTPMNGVIGTASLLQEMPMGR--- 276

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
               E+ + +  S   +LD++ND+LD SKIESG++ L   P++L E   E  S   + A 
Sbjct: 277 -EQKEFVDMLYSSSITLLDLINDILDFSKIESGQLILAKNPLNLFELCKEIESNFSIIAR 335

Query: 681 EKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQ---IIISTTHTSNEE 736
           +K+I +     +NIP  +L D+  ++Q+  N+LSNAI FT  G     I +     +N  
Sbjct: 336 QKQIALVCHIDDNIPDMVLGDITQLRQVLNNLLSNAIKFTSIGCVRLNIKLMDRKDNNAG 395

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           ++ ++ D+G+G+     +K  + F Q   S      GTGLGL + +++V        ++S
Sbjct: 396 IMFQIIDSGIGIAAENQQKIFEKFQQADGSTTRNYGGTGLGLAICRSIVKLMDSDILVYS 455

Query: 797 TPAKGTLIEI 806
            P KG+  E 
Sbjct: 456 KPGKGSRFEF 465


>gi|239908416|ref|YP_002955158.1| putative sensor histidine kinase [Desulfovibrio magneticus RS-1]
 gi|239798283|dbj|BAH77272.1| putative sensor histidine kinase [Desulfovibrio magneticus RS-1]
          Length = 730

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 126/657 (19%), Positives = 229/657 (34%), Gaps = 32/657 (4%)

Query: 167 PIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFS 226
            ++ ++R       F      R                  L          +        
Sbjct: 89  ALFGQHRAAFSAIAFVNAQGVREYAA------TRTGFTDALAPAADTALVTDALTVPGTV 142

Query: 227 QQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKK 286
             +       ++   S+        +  +      L   E + P Q              
Sbjct: 143 VSALRLSADGRDAWLSMAVARLDPFNTTQGVFLVTLPLSELTAPLQSLRLDHGGVAGLAH 202

Query: 287 QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANP 346
                L     E     +             GE+ T       P        G    A  
Sbjct: 203 DGGLLLPAEGAEGGLSQTALPEAVAGLLALGGEHATIGEFAGLPSILGAAPVGRHGLAVV 262

Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
               L +    +  ++   L+ +  A       A                +     +Q  
Sbjct: 263 VAAPLHQVVDQELAKLGLWLTAVAAAAAFLSFLASLWWTR----GLTRPLARLGQAVQAI 318

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
            E  L++                 N +    V +R    + +  + +   IL   ++ + 
Sbjct: 319 AEGDLSVRAPVAGPTETRELATAFNAMAEGLVASREGLARAKESLER---ILSHVNEALW 375

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN---HYLTEILSLDLRQ 523
           +I+REG +   NRA S + GY  ++++  P T       P  +      +TE+L+     
Sbjct: 376 VIDREGHVRLCNRAGSDMLGYAPQELVGLPATSLFPPGDPLGVFLASAPVTELLASGGMT 435

Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKE 581
            LEK   G       + + + + +   +          DI+E K+  + L+ A+K AE  
Sbjct: 436 GLEKTLCGKDGRTLAVLVSLALLRGQDAGEEGVVCLAMDITERKRA-DDLARARKAAEAV 494

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
           S  K++FLA +SHE+RTPL  ++G  E +++           ++       SG  +LD++
Sbjct: 495 SRAKTEFLAVLSHELRTPLNIMLGMLEHVQDCDLPAPTQAGLVQAVK----SGQTMLDVI 550

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILAD 700
             +LD + +E+ ++ L  +P S      E        A  K + +    + ++P  ++ D
Sbjct: 551 AAMLDYASLEANRVVLRRQPFSPGLVAMEVTGRFTDVAKAKGVTLAVDISPDLPATLIGD 610

Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHT----SNEEV--ILR-VRDTGVGMTNYEL 753
              + Q   N+LSNA+ FT  GG+  +          + EV  +L  V DTG+G+T+ +L
Sbjct: 611 AARLTQALANLLSNAVRFTM-GGEARLFLGGRRTPGPDGEVWRLLAMVSDTGMGVTDAKL 669

Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           E   +PF Q   S   R  G GLGL + + +V    G   + S P +GT + +  PL
Sbjct: 670 EYIFEPFTQEDASASRRFGGLGLGLAITRRLVGLMGGTICMDSRPGQGTDVYLTVPL 726



 Score = 47.7 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 29/248 (11%), Positives = 60/248 (24%), Gaps = 4/248 (1%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH----IDPNNHIGDLLKRQN 141
            W ID  G+++  +      +G    +++G+    +            +  + +LL    
Sbjct: 374 LWVIDREGHVRLCNRAGSDMLGYAPQELVGLPATSLFPPGDPLGVFLASAPVTELLASGG 433

Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
               + TL   +G  L V + LA L       E        I    R D+  RA      
Sbjct: 434 MTGLEKTLCGKDGRTLAVLVSLALLRGQDAGEEGVVCLAMDITERKRADDLARARKAAEA 493

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
              +    +      +      +           +     +           +      +
Sbjct: 494 VSRAKTEFLAVLSHELRTPLNIMLGMLEHVQDCDLPAPTQAGLVQAVKSGQTMLDVIAAM 553

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
           L                        +  G   + +K     L+    P L A        
Sbjct: 554 LDYASLEANRVVLRRQPFSPGLVAMEVTGRFTDVAKAKGVTLAVDISPDLPATLIGDAAR 613

Query: 322 TPETVDKC 329
             + +   
Sbjct: 614 LTQALANL 621


>gi|167646926|ref|YP_001684589.1| PAS/PAC sensor hybrid histidine kinase [Caulobacter sp. K31]
 gi|167349356|gb|ABZ72091.1| PAS/PAC sensor hybrid histidine kinase [Caulobacter sp. K31]
          Length = 647

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 101/507 (19%), Positives = 194/507 (38%), Gaps = 24/507 (4%)

Query: 317 EGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
             ++L    +        V    G +   +     +  Y++ + I  +      L  P+ 
Sbjct: 8   ATQDLLDGILKISSEAIIVTDERGVVLMFSVGAETIFGYRAAEMIGASI---ERLIPPEA 64

Query: 376 SDNNAIKPVMLYRSDRTCIAASAR--LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
             ++        +     +    R  +  ++ +               +   E M    +
Sbjct: 65  RAHHRDHVAAFGKGPVDTVVMRERGTIQGLRKDGARF---ALEASLSRSMTREGMVFTTL 121

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV--ED 491
             +       +  +     +L   L+     +  I+ +  +LS      ++F        
Sbjct: 122 IRDVSAREAGQAAVAASERRLRIALQNARMHVIEIDYQAQVLS-KAGAEEIFFDRPLTFA 180

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
            L       L  +  +  +    E L     Q        +  + K +   +  + +   
Sbjct: 181 ALEADIWAGLRPDHRAAADAAWREHLGSG--QPFRFEAPTNRADGKCVWALVTGELVMDE 238

Query: 552 SC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
                     + DI+  +  +  +S A   A+  +  KS+FLA +SHEIRTPL  ++G +
Sbjct: 239 QGRRLRLVGALQDITARRLAQEAVSTAAAAAQAANRAKSEFLATMSHEIRTPLNGVLGMA 298

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
           + ++     P+      +  + I  SG  +L I++D+LD+SKIE+GK+ L      L E 
Sbjct: 299 QAMELDPLPPV----QRDRLSVIRESGQALLAILDDVLDLSKIEAGKLELEEAEFELAEV 354

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727
              A +     A +K + +           + D   V QI  N++SN + FT +G ++ +
Sbjct: 355 ARRAQAAFAALAAKKGVRLTLDVRQAQGAYVGDPIRVLQILYNLISNGLKFTEAG-EVQV 413

Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
           +  H  +  ++L V DTG+GMT   +E    PF Q   S   R  GTGLGL + +++V+ 
Sbjct: 414 TARHR-HGALVLAVSDTGIGMTPAVVETLFTPFVQADTSTTRRFGGTGLGLSITRSLVEK 472

Query: 788 NMGKFYIFSTPAKGTLIEIIFPLYDTS 814
             G   + STP +G+   +  PL    
Sbjct: 473 MSGSIQVESTPGRGSRFVVTLPLPRAE 499



 Score = 47.3 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 25/240 (10%), Positives = 55/240 (22%), Gaps = 17/240 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            D  G +   S       G  A +MIG  +  +        +        +       T 
Sbjct: 27  TDERGVVLMFSVGAETIFGYRAAEMIGASIERLIPPEARAHHRDHVAAFGKGPV---DTV 83

Query: 149 LWPIEGTNLYVPID---LAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +    GT   +  D    A     SR+    G     ++         +A     +++  
Sbjct: 84  VMRERGTIQGLRKDGARFALEASLSRSMTREGMVFTTLIRDVSAREAGQAAVAASERRLR 143

Query: 206 --------HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257
                   H+ EI      + K   +      P     ++  + +               
Sbjct: 144 IALQNARMHVIEIDYQAQVLSKAGAEEIFFDRPLTFAALEADIWA--GLRPDHRAAADAA 201

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
               L S +     +   +  +            + +        +      +      E
Sbjct: 202 WREHLGSGQP-FRFEAPTNRADGKCVWALVTGELVMDEQGRRLRLVGALQDITARRLAQE 260


>gi|242240330|ref|YP_002988511.1| phosphate regulon sensor protein [Dickeya dadantii Ech703]
 gi|242132387|gb|ACS86689.1| PAS/PAC sensor signal transduction histidine kinase [Dickeya
           dadantii Ech703]
          Length = 440

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 64/358 (17%), Positives = 136/358 (37%), Gaps = 35/358 (9%)

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
           +  S  E+  D + I   +G+I+  N+    L G+   +   +     L     +     
Sbjct: 99  RFRSGAESLPDAVIITTEDGVIIWCNQLAQHLLGFRWPEDNGQNVLNLLRFPEFAQYM-- 156

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572
                     Q   +  +   K+ + +  R++      +    + + D+++ +Q +    
Sbjct: 157 --------QSQDFSRPLMLQIKQTRHVEFRVMPY---SAGQLLMVVRDVTQMRQLEG--- 202

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
                       + +F A VSHE+RTPLT + G+ E++ +     L      +    +  
Sbjct: 203 -----------ARRNFFANVSHELRTPLTVLQGYLEMMNDD---SLDGALQAKALQTMQE 248

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN-EKRILIRTSFA 691
               +  +V  LL +S+IE+       E V +   +       Q  +     I+ R +  
Sbjct: 249 QTRRMDGLVKQLLTLSRIEAATDIDLNEKVDVPMMLRVLQREAQTLSQDRHEIIFRVN-- 306

Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751
               ++  +   ++    N++ NA++ TP G +I +    T       +V D G G+   
Sbjct: 307 -EQLQVFGNEEQLRSAVSNLVYNAVNHTPKGTRIEVCWQQTPQG-AQFQVSDNGPGIAAE 364

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            L +  + F ++  ++  +  G+GLGL + K  +  +  +  I S    G+      P
Sbjct: 365 HLPRLTERFYRVDKARSRQTGGSGLGLAIVKHALSHHDSRLEIISEEGVGSRFMFTLP 422


>gi|150007794|ref|YP_001302537.1| two-component system sensor histidine kinase [Parabacteroides
           distasonis ATCC 8503]
 gi|298376836|ref|ZP_06986791.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_19]
 gi|149936218|gb|ABR42915.1| two-component system sensor histidine kinase [Parabacteroides
           distasonis ATCC 8503]
 gi|298266714|gb|EFI08372.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_19]
          Length = 632

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 105/512 (20%), Positives = 198/512 (38%), Gaps = 32/512 (6%)

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
              +S   D  E +  +     P+   +Y   G L   N   + +   +S  D+      
Sbjct: 125 EEKISKMIDHNEMIFRKLYVNLPVGVELYDRDGYLIDLNAKDMEIFGIRSKKDVLGVNIF 184

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
           S  +    +         + +R + +        +      E  L +        +Q  E
Sbjct: 185 SNPILPKDVIKKLKENKSVNFRLNYSFKKVD-DYYNTSKVGE--LDIVTKASILYDQRGE 241

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR---EGI-ILSTNRAVS 482
                 I  ++ +  I   ++         +      G A+ +    EG  I      + 
Sbjct: 242 PSSYLLINLDNTEKMIAYNRISEFENVFTLVSVYAKVGYALYDLYTFEGYAIKQWYENMG 301

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE-KLLSL 541
           +  G P+  I+      ++  N    +N +  E+          +     + +  K +  
Sbjct: 302 EKDGTPLSQIIG--IYSYIHPNDAGYINSFFEEV-KQGKAHHFRREVRVKSGDGWKWICA 358

Query: 542 RIIIKK---LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
            I        P         +DI+E K  + K    ++ AE+    KS FLA +SHEIRT
Sbjct: 359 NITRNPQSVDPNKPEMICINYDITELKDSQLK----RERAEELDRLKSAFLANMSHEIRT 414

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
           PL AI+GFS+++              E+   ID +  ++L +++D+LD++KIESG M+  
Sbjct: 415 PLNAIVGFSQLLAETD----DPEERHEFVEIIDSNNRMLLQLISDILDLAKIESGTMDFK 470

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718
           F  +S+ E ++E ++  ++   +  + +     +   +I +D   + Q+  N L+NAI +
Sbjct: 471 FADMSIKEVINEIVTSFRIKMPD-NVALIAPKDSPECQIYSDRMRLTQVISNFLNNAIKY 529

Query: 719 TPSGGQIIISTTHTS-NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
           T  G  I     +    +E+   V DTG GM+          F +    +    +GTGLG
Sbjct: 530 TSEGCII---LAYEIIGDEIKFSVTDTGDGMSQEIQAHIFDRFYKGNTFK----QGTGLG 582

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           L + + +V+   G+  + S   KG+      P
Sbjct: 583 LSICETIVNRLGGRIGVNSELGKGSTFWFTHP 614


>gi|119485363|ref|ZP_01619691.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Lyngbya sp. PCC 8106]
 gi|119457119|gb|EAW38245.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Lyngbya sp. PCC 8106]
          Length = 402

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 79/249 (31%), Positives = 143/249 (57%), Gaps = 2/249 (0%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E ++++ ++    +   + S  KS FLA +SHE+RTP+ AI+GFS+++  Q   PL  P+
Sbjct: 152 ELERQRKQIERQNRKLAEASRLKSQFLATMSHELRTPMNAIMGFSQLLLRQYPDPLV-PQ 210

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
            ++    I  +   +L ++N++LD SKIE+G   L     +L + V      ++  A EK
Sbjct: 211 QLDMVQRIFNNAQHLLTMLNEVLDFSKIEAGHFQLEPTEFNLAQFVELTTQELRSLAVEK 270

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           ++ +  +     P I+ D  S++Q+ +N++SNAI FT SGG + I+    +N+++I+ V+
Sbjct: 271 QLTLEVNINLEEPMIINDQNSIRQVLVNLISNAIKFTDSGG-VWINVQEQANDQLIIAVK 329

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTGVG+ +  L++  + F QI  +   +  GTGLGL +  ++V    G+  + S    G+
Sbjct: 330 DTGVGIASDHLQEIFEAFRQINQTNTRKHYGTGLGLAIVDSLVKLMHGQVTVESQLGCGS 389

Query: 803 LIEIIFPLY 811
           + ++ FP Y
Sbjct: 390 IFQVEFPRY 398


>gi|94969922|ref|YP_591970.1| multi-sensor signal transduction histidine kinase [Candidatus
           Koribacter versatilis Ellin345]
 gi|94551972|gb|ABF41896.1| multi-sensor signal transduction histidine kinase [Candidatus
           Koribacter versatilis Ellin345]
          Length = 705

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 104/655 (15%), Positives = 218/655 (33%), Gaps = 49/655 (7%)

Query: 168 IYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ 227
           I     + SG    G + +         + +  +  F    E              +   
Sbjct: 74  ILDAALDISGAD-MGNLQIFDGKALKIEVHRGFEAPFLSYFETVNAKEPNAACGVVLKEG 132

Query: 228 QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287
           +        ++ + + T+      +                             +   ++
Sbjct: 133 KRVIVEDVTRSPIFAGTQALDVMLNAGVRALQSTPLISHDGRVLGVFSTHFRTVKRPGER 192

Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY-ANP 346
               L   ++   + L   +  +        E       D  P+  ++     L Y  N 
Sbjct: 193 EVRALDVLARLGADLL---DRKAAEDALRHSEQRFRVITDASPVLVWMAGTDKLCYYFNK 249

Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD-RTCIAASARLHTIQW 405
            +L     ++++     G          +  ++  + + +Y ++           + ++ 
Sbjct: 250 GWLNFVG-RTLEQEAGNGWAE------NVHPDDFDRCLQIYVANFDERRPFEME-YRLRH 301

Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465
           +      +      +           G   +  D +           +L +I++++ D I
Sbjct: 302 HSGQYRWILDCGVPRFAPDGSFEGYVGGCLDIHDRKEAAEI----RERLAAIIDSSDDAI 357

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
              N   I+ S N+   K+FGY  ++I+ KP T+ L Q      +  L++I S   ++  
Sbjct: 358 ISKNLNSIVTSWNKQAEKMFGYTADEIIGKPITIILPQELLQDEDMILSKIRSG--QKID 415

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKE 581
              T+   K+ + L + + I  +   +   +       DI+E K+ +  L   +KIA   
Sbjct: 416 HFETVRLAKDGRRLEVSLSISPVRDENGRIIGAAKIARDITEKKRMERALRMTEKIA--- 472

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
                   A V+HEI  PL +I      +      P      ++Y    D+  + V  I 
Sbjct: 473 --AAGRLAATVAHEINNPLESITNLV-YLAKT--SPELPTSLMQYLEQADQELSRVAYIA 527

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701
              L   +  S         +S+   V   +++ Q     K I      +  +  + A  
Sbjct: 528 RQTLGFYRDNS-----RPAWLSVSALVEGVMTIYQRKMENKNISFDKRISAEL-EVFAVE 581

Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAM 757
             +KQ+  N+++NAI  +   G I +    +++ +    + L V D G G+    + K  
Sbjct: 582 GKLKQVLSNLVTNAIDASDFDGVISVRARKSTDRKGQPVICLAVADRGEGIPKEHMAKLF 641

Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA--KGTLIEIIFPL 810
            PF    +       GTGLGL ++K +V+   G   + S      GT+  I  P+
Sbjct: 642 APFFTTKSEI-----GTGLGLWVSKDLVETAGGSIRVRSRAGAKSGTVFTITLPI 691



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/409 (9%), Positives = 99/409 (24%), Gaps = 27/409 (6%)

Query: 70  SENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP 129
           SE  F        V   W           ++     +G    +  G    +       D 
Sbjct: 220 SEQRFRVITDASPV-LVWMAGTDKLCYYFNKGWLNFVGRTLEQEAGNGWAENVHPDDFDR 278

Query: 130 NNHIGDL-LKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNR 188
              I       +  +  +  L    G   Y  I    +P ++ +  F G+   G      
Sbjct: 279 CLQIYVANFDERRPFEMEYRLRHHSG--QYRWILDCGVPRFAPDGSFEGY--VGGCLDIH 334

Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA 248
              +   + +RL        +     S         +++Q+        +++        
Sbjct: 335 DRKEAAEIRERLAAIIDSSDDA--IISKNLNSIVTSWNKQAEKMFGYTADEIIGKPITII 392

Query: 249 HKDDVLKTEKYPLL--TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
              ++L+ E   L    S +     +      +  +         +++ +          
Sbjct: 393 LPQELLQDEDMILSKIRSGQKIDHFETVRLAKDGRRLEVSLSISPVRDENGRIIGAAKIA 452

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
              +     +    +T +      +   V         N     +T    +         
Sbjct: 453 RDITEKKRMERALRMTEKIAAAGRLAATVAHE-----INNPLESITNLVYLAKTSPELPT 507

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
           S L+   + +D    +   + R                 +      ++     +      
Sbjct: 508 S-LMQYLEQADQELSRVAYIARQTLGFY----------RDNSRPAWLSVSALVEGVMTIY 556

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT-SDGIAIINREGII 474
                            + ++     +L  +L    ++ I   + +G+I
Sbjct: 557 QRKMENKNISFDKRISAELEVFAVEGKLKQVLSNLVTNAIDASDFDGVI 605


>gi|254694720|ref|ZP_05156548.1| histidine kinase [Brucella abortus bv. 3 str. Tulya]
          Length = 859

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 131/724 (18%), Positives = 263/724 (36%), Gaps = 49/724 (6%)

Query: 110 AFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN--TWYGKTTLWPIEGTNLYVPIDLAALP 167
              ++G                  G  L+ Q+        +    +     + ++     
Sbjct: 150 RADVVGQLPDACGAPQDRPAFLAFGRWLRPQSVTALERAISTLREQARAFDLTVETVNGS 209

Query: 168 IYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ 227
           +   +   SG  GF +    +     +A    L+ +   L +  +    +          
Sbjct: 210 LLDVHGRTSG--GFAVA-CFQSLQGVQAERASLEAQNRELADRIELMRRLLDRIEQPAWL 266

Query: 228 QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287
           +     +   N   +     A+    + +E   L  ++     E++ F    + +     
Sbjct: 267 RDGNGRIEWVNLAYAQAVDMANASQ-VISEGRELFGAQARQRLERDRFAEPVVQEQLTAV 325

Query: 288 YFGTLQ--------NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG 339
             G  +          S             ++            ET+D+      ++   
Sbjct: 326 VHGDRRVFDVIDVSAESGSVGLGFDLTEVQAVRDELSRTLKSHAETLDQLSTAVAIFDPE 385

Query: 340 -NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398
             L + N +F+ L     V  +E     + + D  +       +P      D    A  A
Sbjct: 386 MKLQFFNQAFVKLWGL-DVAWLETRPSNTLIFDRLRAEGKLPEQPEWRKWKDSLLSAYRA 444

Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI- 457
                    E    M  +P  +  +   N    G      +    K ++E     L  + 
Sbjct: 445 V--------EPEEHMWHLPDTRTMRVVANPHPQGGVTWFFENMTEKFELEGRYNTLIKVQ 496

Query: 458 ---LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYL 513
              L+  ++ +A+   +G +  +N + + L+  P E +      ++  +       +   
Sbjct: 497 GETLDHLAEAVAVFGSDGRLRLSNPSFAALWSLPSEMVREGTHISIIAKLCNQRGGDGLW 556

Query: 514 TEILSLDLRQTLEKITL---GSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570
            + +S       ++          +  +LS  ++           LT  D+++  + +  
Sbjct: 557 EDFVSTVTGFLDQRDGRMGQVELSDGAILSFAVVPLP---KGQTMLTFIDVTDTVRVERA 613

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           L    +  E     K+DF+  VS+E+R+PLT IIGF+E+++   FG L N R +EY ++I
Sbjct: 614 LKEKNEALEFADQIKNDFVQHVSYELRSPLTNIIGFTELLQTPAFGSL-NERQLEYLDHI 672

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
             S +++L IVND+LD++ +++G M L    VS+ EA+S A S V     +  I +    
Sbjct: 673 STSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEAISAAASRVSERLRDHNIGLDVDI 732

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
           A+++    AD   V+Q+  N+LSNA+++ P G  I++        +V+  V D G GM +
Sbjct: 733 ADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVLQVA-RDGADVVFAVHDDGHGMPS 791

Query: 751 YELEKAMKPFGQIPN-----SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
             L+   K F   PN        +          + K+ V+ + G+  I +   +GT + 
Sbjct: 792 EVLDTVFKRFQSYPNGGRRRGAGLGLA-------IVKSFVELHGGRVEIDTGEERGTTVI 844

Query: 806 IIFP 809
             FP
Sbjct: 845 CRFP 848


>gi|189502507|ref|YP_001958224.1| hypothetical protein Aasi_1160 [Candidatus Amoebophilus asiaticus
            5a2]
 gi|189497948|gb|ACE06495.1| hypothetical protein Aasi_1160 [Candidatus Amoebophilus asiaticus
            5a2]
          Length = 2303

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 99/560 (17%), Positives = 192/560 (34%), Gaps = 53/560 (9%)

Query: 292  LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLL 351
            ++N   +    L      ++    +   + T  T+ K P+  +      +          
Sbjct: 1591 IENAGAQQGAVLFVEADDTIFVQAEYAIDGTITTLQKIPLADWANGAHTVIQYVKRMQQP 1650

Query: 352  TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT---IQWNRE 408
                     E     + L      + +    P++ ++  +  +     L T   +    +
Sbjct: 1651 IVVDHATTHEQFK--TDLYINRTQAKSILCVPLLKHKELQAILYVENNLMTHAFMPEQVQ 1708

Query: 409  NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM----QLCSILEATSDG 464
              L +T               Q  +  +  +    +   E  +      L   LEA+  G
Sbjct: 1709 TVLILTAQMEISLENARYVARQLVLTQQLAEQSARRLIAEESLHAVTHDLKLALEASQAG 1768

Query: 465  IA--IINREGIILS--TNRAVSKLFGYPVEDILRKP--FTVFLEQNTPSVMNHYLTEILS 518
                 I+ +  +    TN     LFG   +            +       +N  +   L 
Sbjct: 1769 TWNWWIDTD-KVTWDTTN---CALFGLTPDTFKGTYAAVVECVHPEDRERLNQCVKRCLE 1824

Query: 519  LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY--SLTMHDISEWKQEKNKLSHAKK 576
             D+   +E   +     + ++     + +              DI++ KQ + +   A +
Sbjct: 1825 QDIPYDMEYRVIWPDGSQHVIVAHGHVYRDKDGKPIKMVGVCLDITQHKQLEQEWLEALE 1884

Query: 577  IAEKESSHKSD-----------FLARVSHEIRTPLTAIIGFSEVIKNQRFG--------- 616
             AE+    ++D           F+  V HEIR P++ I      ++ +            
Sbjct: 1885 QAEEAQRQRADEAERHSEEQRWFIDTVCHEIRNPMSGISNTVSFMEEKLASLKAYKKSLP 1944

Query: 617  -PLGNP---RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
             P          E    I    N  + ++N +L +S++E+GK  L FEP      + + I
Sbjct: 1945 KPALEELVQTLEEDIKTIKHCVNHQIAVINGVLSLSRLEAGKEELIFEPFKPKAIIKDII 2004

Query: 673  SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
            +L       K++ +          I  D    K + +N++SNAI FT  G  I +S    
Sbjct: 2005 TLFTPQLKTKQLDLIVDLPEQAIAIKGDPERFKIVLINLISNAIKFTEKG-YIKVSLQIQ 2063

Query: 733  SNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
            S +    +V + V DTG GMT  E  +  + F +       + EG+GLGL ++K ++D  
Sbjct: 2064 SVDSSHVQVAICVEDTGTGMTPEEQSRLFQQFSR---PLSSQYEGSGLGLAISKKLLDLM 2120

Query: 789  MGKFYIFSTPAKGTLIEIIF 808
             G   + S   +G++  I  
Sbjct: 2121 GGTIQVDSVKGQGSVFAIHL 2140


>gi|172060667|ref|YP_001808319.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria
           MC40-6]
 gi|171993184|gb|ACB64103.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria
           MC40-6]
          Length = 1240

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 107/637 (16%), Positives = 223/637 (35%), Gaps = 48/637 (7%)

Query: 184 VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL 243
           V           +     +       ++                        + + +  +
Sbjct: 194 VKDVTTVASRVDVAPNRYRLAPLRERMQASVDGARNALAIAAPNLDAATAQGITSALGRV 253

Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303
                  +D L   +  +    + ++  +       + +          +     +   +
Sbjct: 254 AADIFDGNDGLVALRAGMFA--QPAVTARYRAKEDQVLRSLDALDVKLAEIADPFALRIV 311

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIA 363
           + R     +  F                     +      A        KY   +  ++A
Sbjct: 312 AARQRLDEAIAFRGRAARIASLSAAVNGGINALAFHLRMVAQSETAERLKYADAELHKLA 371

Query: 364 GGL----STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
           G L    S L DA         K      +  T +A +AR      +      M      
Sbjct: 372 GALAQSASALRDALVTDGQGNAKRAQAVVALTTELAGAARRIVAVKSD-----MLSNDVA 426

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
                 +            + +  +  ++               GI       +  +   
Sbjct: 427 MQRIVADVDTTANRLAAYTEQQAVRVDLQQR-------------GIV----SDVYRAVTS 469

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
           A   +        +           + +     LT  ++               +    L
Sbjct: 470 AFLMIVVVSFLLAIGGFVISHRLGTSIARPLSSLTRTMA-------------RIRSGSDL 516

Query: 540 SLRII-IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
           SLR+    +   ++  +     + E ++    L  A   AE  +S KSDFLAR+SHEIRT
Sbjct: 517 SLRMSHKGRDEIAALIAGFNMMLDEIERRDVDLQAAIATAEAANSAKSDFLARMSHEIRT 576

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
           P+  ++G +E+++  R       +  ++ + + RSG  +L I++D+LD SKIE+GK+ L 
Sbjct: 577 PMNGVLGMTELLQRTRLTS----KQRKFVDTVYRSGQTLLVIIDDILDFSKIEAGKLTLE 632

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIH 717
               +L + + + ++L++  A  K + +    A+++P+ +  D   ++QI  N+L NAI 
Sbjct: 633 RIDFNLHQLLDDVVALMEPNARRKELELVYQRADSVPQRMRGDPVRLRQILTNLLGNAIK 692

Query: 718 FTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
           FT  G  + +S  ++ +  ++ ++ D+G+G+      +  +PF Q  +S   +  GTGLG
Sbjct: 693 FTEHG-HVALSAEYSDDGRIVFKIADSGIGIAPDVAAQLFRPFQQADSSTARKYGGTGLG 751

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           L +++ + +   G   + STP KG++  +  P    S
Sbjct: 752 LAISRQLAEMMGGTLALDSTPGKGSVFTVTTPFEPAS 788


>gi|160937186|ref|ZP_02084548.1| hypothetical protein CLOBOL_02076 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439750|gb|EDP17499.1| hypothetical protein CLOBOL_02076 [Clostridium bolteae ATCC
           BAA-613]
          Length = 837

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 99/473 (20%), Positives = 183/473 (38%), Gaps = 21/473 (4%)

Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
             +      + + D     +   +  + L +       +   L  ++ +    +  T   
Sbjct: 238 AALRSQASGTAVFD--FEGEKQFLTFMPLMQKHNWYYVSVIPLSMVEKDGTAIIMHTMKM 295

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILS 476
                               +  +  +           +I +     I I++   G +  
Sbjct: 296 AFIITAAIVFSVAVIAAFFLLRNKKRRDYERYVQNINEAIAQNIDTAIFIVDGHTGHVEY 355

Query: 477 TNRAVSKLFGYPVEDI--LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
                 K+ G   +++       +    +   SV+   + E         +    L    
Sbjct: 356 AFENAEKILGIKPQNLGEDCGRCSGSFYETLCSVLKERIDE--KTVKTIPVYNDLLSRQM 413

Query: 535 EEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
               + +  +  KL     Y   + D++  +Q +  L+ A   AE  ++ KS FL+ +SH
Sbjct: 414 ---WIQIAALPVKLLGELKYIFAVTDVTHDRQIRENLNAAVAAAEHANASKSVFLSNMSH 470

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           +IRTP+ AI+G +  +           +  +    I  S   +L+++ND+LD+SKIESGK
Sbjct: 471 DIRTPMNAIVGMT-KLAEIHI--EDREKVKDCLYKIGISSKHLLELINDVLDMSKIESGK 527

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF-ANNIPRILADLRSVKQIALNILS 713
           + L  E  SL E +   I++V      K  +  T         +L D     Q+ LN+LS
Sbjct: 528 LVLTSESFSLTELIQRNIAIVNPQYQAKNQVFVTETKDIRHEYLLGDSLRFNQVLLNLLS 587

Query: 714 NAIHFTPSGGQIIISTTHTSNEE-----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
           NA  FTP  G I ++      +        + V DTG+G++   L K   PF +  +  Q
Sbjct: 588 NAGKFTPENGTITLTVKELPQKHSGHAVYRIAVADTGIGISPEFLPKLFLPFERERSRHQ 647

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE--IIFPLYDTSHPHDC 819
            + EGTGLGL ++K ++ A  G+ Y+ S   +G++    +  PL   +    C
Sbjct: 648 NQAEGTGLGLVISKNIIAAMGGQIYVESRLGEGSVFTVEVELPLSKEADDELC 700


>gi|224023356|ref|ZP_03641722.1| hypothetical protein BACCOPRO_00049 [Bacteroides coprophilus DSM
           18228]
 gi|224016578|gb|EEF74590.1| hypothetical protein BACCOPRO_00049 [Bacteroides coprophilus DSM
           18228]
          Length = 480

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 84/369 (22%), Positives = 173/369 (46%), Gaps = 23/369 (6%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF-LEQ 503
            +++     + +I+ +  + I  +N E  IL  N     +     E++L+KP     +  
Sbjct: 128 AQIKAAKNYMETIINSVKEPIIGLNNELTILFINDEALNVLNLKREEVLQKPAQEISMRN 187

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL---RIIIKKLPFSSCYSLTMHD 560
           +    +   L +  + +     E + + +  +E    +   +I  +    +  Y + + +
Sbjct: 188 DLLRRLIRELMDSQTENRASKAEPLKIYADNKESYFQMKCMQINKQSNNINEGYVIMLKN 247

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I+E+K              +  S K+ F++ +SHE++TP++AI+   +++++ R G L N
Sbjct: 248 ITEFK--------------ELDSAKTTFISTISHELKTPISAIMMSLQLLEDDRVGDL-N 292

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
               E A  I  +   +L+I  +LL+++++ESGK+ L        E +  AI   ++ A 
Sbjct: 293 EEQKELAQSIQDNSERLLNITGELLNMTQVESGKLQLKPRITKPIELIEYAIKANRVQAE 352

Query: 681 EKRILIRTSFANN-IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
           +  I I   +  N I ++  D   +  +  N+LSNAI ++P  G+III    T +  + +
Sbjct: 353 KFNIQIEVQYPENKIGKLFVDSEKIAWVLTNLLSNAIRYSPENGRIIIGARQTEDNHIEM 412

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            VRD G G+     +     + ++P +   + +G+GLGL ++K  V+A+ G   + S   
Sbjct: 413 YVRDFGKGIDPRYHQSIFDHYFRVPGT---KVQGSGLGLSISKDFVEAHGGTLTVESEIG 469

Query: 800 KGTLIEIIF 808
           KG+   +  
Sbjct: 470 KGSCFTLRL 478


>gi|170703164|ref|ZP_02893975.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ambifaria
           IOP40-10]
 gi|170131926|gb|EDT00443.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ambifaria
           IOP40-10]
          Length = 528

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 74/371 (19%), Positives = 146/371 (39%), Gaps = 19/371 (5%)

Query: 448 EIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
                +  +++ A +D  + +++ +G + + N    ++ GY   +I+   F+ F   +  
Sbjct: 25  RFAEFRFETVVGAITDYAVFMLDPQGNVATWNAGAERIKGYRTTEIIGHHFSRFYPPDAI 84

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDIS 562
           +        +    L    E       K+  L    + I  +               D++
Sbjct: 85  AAGRPAF-GLREATLHGRFEDEGWRVRKDGSLFWASVTITAVRDDGGQLAGFIKITRDMT 143

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E K+            E  +   S F+A ++HE+R  L  +     V++     P   P 
Sbjct: 144 ERKRL--------AELEMSTHRLSVFIAMLAHELRNHLAPLRHSVSVLQT---LPDAAPM 192

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             +  + + R    +  +V+DLLD+ +I +GK+ L   PV++ + V   +  +Q     +
Sbjct: 193 LAQCRDAVHRQVGQLTRLVDDLLDVGRITAGKVELDNAPVTVRDVVCRGMESIQPKLAAR 252

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           +  +R         +  D   + Q+  N+L NA  F+P G +I +         V +RV 
Sbjct: 253 QQHLRVELPPEPVVVRGDAARLVQVLHNLLDNASKFSPPGARIDV-AADREGSTVAIRVT 311

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKG 801
           D GVG+    LE     F Q     +   +G GLGL + ++ ++ + G+    S  P  G
Sbjct: 312 DHGVGIAAGSLETIFDLFDQDGVPGRRPSDGFGLGLAICRSFIELHGGRISAESEGPGHG 371

Query: 802 TLIEIIFPLYD 812
               +  P+  
Sbjct: 372 ATFTVRLPVEH 382



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 45/450 (10%), Positives = 111/450 (24%), Gaps = 42/450 (9%)

Query: 53  NFTDQNQESVSNTNYLDSEN------TFVFDP--IPRTVRFTWNIDAHGYLKEISEELPK 104
           N  D   E        D+ +       F F+      T    + +D  G +   +    +
Sbjct: 2   NKDDAISELHPPLGPADARDLLHRFAEFRFETVVGAITDYAVFMLDPQGNVATWNAGAER 61

Query: 105 TIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR--QNTWYGKTTLWPIEGTNLYVPID 162
             G    ++IG           I        L +      +  +      +G+  +  + 
Sbjct: 62  IKGYRTTEIIGHHFSRFYPPDAIAAGRPAFGLREATLHGRFEDEGWRVRKDGSLFWASVT 121

Query: 163 LAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG----KRLDKKFSHLHEIKKGHSSVE 218
           + A  +     + +GF    I            L     +         HE++   + + 
Sbjct: 122 ITA--VRDDGGQLAGF--IKITRDMTERKRLAELEMSTHRLSVFIAMLAHELRNHLAPLR 177

Query: 219 KEKYDIFSQQSPPPHL------------RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
                + +     P L            ++   V  L +        ++ +  P+   + 
Sbjct: 178 HSVSVLQTLPDAAPMLAQCRDAVHRQVGQLTRLVDDLLDVGRITAGKVELDNAPVTVRDV 237

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGT----LQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
                +     +   Q   +         ++ ++    + L +    +            
Sbjct: 238 VCRGMESIQPKLAARQQHLRVELPPEPVVVRGDAARLVQVLHNLLDNASKFSPPGARIDV 297

Query: 323 PETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA----PKLSDN 378
               +   +   V  HG +  A  S   +      D +                    + 
Sbjct: 298 AADREGSTVAIRVTDHG-VGIAAGSLETIFDLFDQDGVPGRRPSDGFGLGLAICRSFIEL 356

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
           +  +              + RL                   K    P N+       +  
Sbjct: 357 HGGRISAESEGPGHGATFTVRLPVEHHVETARAEAPAPRAGKPAAAPLNIVVVDDNRDSA 416

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAII 468
           DT     +++  V +   +    +D +A++
Sbjct: 417 DTLAVLLQLKGHVPR---VAYNANDALALV 443


>gi|168701010|ref|ZP_02733287.1| PAS/PAC sensor signal transduction histidine kinase [Gemmata
            obscuriglobus UQM 2246]
          Length = 1197

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 92/748 (12%), Positives = 225/748 (30%), Gaps = 38/748 (5%)

Query: 91   AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150
              G + E+++   +  G    +++G  + ++           +  +            + 
Sbjct: 468  GDGTVLEVNDGFCRLCGLPRGQVLGRSVVELIWRDPGARARMLDAVRAAGAVRDYPGVIR 527

Query: 151  PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
               G    V I    + +             G +      N      +        + E 
Sbjct: 528  DAAGATHEVSIFCTRIEVGGSE------CLLGTIRDVTERNRAEREVRNERLFVDTMIES 581

Query: 211  KKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
              G                    +      +++ +                 +  +  + 
Sbjct: 582  MPGVLYCYDSDGKFLRWNRRFETVTGYSAAEIAGMHPLDFFTPADRPLLSRRIGDAFATG 641

Query: 269  LPEQEDFHTINLNQYTKKQYFGT---LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
                E              + G        +      +             E E    E 
Sbjct: 642  EAHAEAPLLAKDGTARPYHFTGRRVAFDAATCLVGIGIDVSARHDAERQRAESERRYREL 701

Query: 326  VDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
            V+        ++  G + + N        +   D+I     L T++   + +  +    +
Sbjct: 702  VELANSIILRWTPDGRVAFLNEFGQRFFGFTG-DEIVGRHVLDTIVPYTESTGRDLKGLI 760

Query: 385  MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
                +D       +    ++ +   +               E +    +  +    R  +
Sbjct: 761  ERVCADPEAFE-QSVNENVRRDGTRAWVAWTNRIVLGAG-GEVVEILSVGSDVTGARRME 818

Query: 445  RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            + +     +  ++   +   +A+   +G I+  N++  +++    E +  +  T F E  
Sbjct: 819  QALVASEKKFSAVFRLSPVSLALTRLDGPIVDVNKSFERIYKLSAERVRGRLPTDFAELY 878

Query: 505  TPSVMNH-YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                    Y   +        +E   +        L +   + +L  ++   +   D++ 
Sbjct: 879  DAPADRALYAERLRRDGRLSGIEVRRVLGDGSAVDLVVAAELIELDGAAHALVASTDVTP 938

Query: 564  WKQEKNKLSHAKKIAEK-----------ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
             K+ +  L  A    E+            ++    F   VSH++R PL A+ GFS+ +  
Sbjct: 939  LKRAEKALREANAALERRVEARTNELVAANAELEAFCYSVSHDLRAPLRAVDGFSQAVLE 998

Query: 613  QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
              +GP  +     +   I  +   + ++++DLL +S++   + +L  E V L     E +
Sbjct: 999  D-YGPRLDAEGQGFLKRIRGAAARMGELIDDLLTLSRV--TRADLRRERVDLSALAGEVV 1055

Query: 673  SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP--SGGQIIISTT 730
              ++    +    +    A  +     D   ++ +  N+L NA  +T      +I + + 
Sbjct: 1056 RALRQ--ADPGREVEAVVAPGL-FADGDRSLLRVVLENLLGNAWKYTSKVEAARIELGSE 1112

Query: 731  HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
              S   ++  VRD G G       K  +PF ++   ++    G G+GL     +V  + G
Sbjct: 1113 ARSEG-LLFFVRDNGAGFDPAYAHKLFQPFQRLH--REAEFPGHGVGLATVLRVVRRHGG 1169

Query: 791  KFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
                  +   G       P++     H+
Sbjct: 1170 AVGAEGSVGNGARFWFTMPVHHPGPHHE 1197



 Score =  102 bits (254), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 33/403 (8%), Positives = 100/403 (24%), Gaps = 18/403 (4%)

Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE 245
                 D  ++     +    + E   GH ++ ++   +  +        +     +   
Sbjct: 316 DLTPATDRASVEGARVRFHGRVAESGPGHLTLVRDGLAVQVRLPEDDGRVVPVGSVATAA 375

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
                 +      +P+   + +                                   L  
Sbjct: 376 GALGSREGAGAVLFPVGAGDVTVDAPPPARPLTRAQVVAALWLALGAVVACAAWAWSLHR 435

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIA 363
                      E E          P    +     G +   N  F  L        +   
Sbjct: 436 VVRFRTRELS-ESERKFATAFHANPDAVVLTRAGDGTVLEVNDGFCRLCGLPRGQVLGR- 493

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
               ++++          + +   R+     A       I+     +  ++         
Sbjct: 494 ----SVVELIWRDPGARARMLDAVRAAG---AVRDYPGVIRDAAGATHEVSIFCTRIEVG 546

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
             E +   G   +  +    +R++  E + + +++E+    +   + +G  L  NR    
Sbjct: 547 GSECL--LGTIRDVTERNRAEREVRNERLFVDTMIESMPGVLYCYDSDGKFLRWNRRFET 604

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           + GY   +I       F       +++  + +  +               K+        
Sbjct: 605 VTGYSAAEIAGMHPLDFFTPADRPLLSRRIGDAFATGEA---HAEAPLLAKDGTARPYHF 661

Query: 544 IIKKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
             +++ F +         D+S     + + + +++   +    
Sbjct: 662 TGRRVAFDAATCLVGIGIDVSARHDAERQRAESERRYRELVEL 704



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 56/477 (11%), Positives = 121/477 (25%), Gaps = 41/477 (8%)

Query: 90   DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH-IDPNNHIGDLLKRQNTWYGKTT 148
            D+ G     +       G  A ++ GM   D          +  IGD             
Sbjct: 590  DSDGKFLRWNRRFETVTGYSAAEIAGMHPLDFFTPADRPLLSRRIGDAFATGEAHAEAPL 649

Query: 149  LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                +GT             +       G    GI       +D        ++++  L 
Sbjct: 650  -LAKDGT-ARPYHFTGRRVAFDAATCLVG---IGI--DVSARHDAERQRAESERRYRELV 702

Query: 209  EIKKGHSSVEKEKYDIFSQQS-------PPPHLRMKNKVSSLTEYYAHKDDV-LKTEKYP 260
            E+             +                  +   V      Y       LK     
Sbjct: 703  ELANSIILRWTPDGRVAFLNEFGQRFFGFTGDEIVGRHVLDTIVPYTESTGRDLKGLIER 762

Query: 261  LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH----PSLSAYFD 316
            +    E+      +    +  +         +     E  E LS  +       +     
Sbjct: 763  VCADPEAFEQSVNENVRRDGTRAWVAWTNRIVLGAGGEVVEILSVGSDVTGARRMEQALV 822

Query: 317  EGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
              E          P+   +    G +   N SF  + K  +     + G L T       
Sbjct: 823  ASEKKFSAVFRLSPVSLALTRLDGPIVDVNKSFERIYKLSAE---RVRGRLPTDFAELYD 879

Query: 376  SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
            +  +        R D        R   +  +      +      + +             
Sbjct: 880  APADRALYAERLRRDGRLSGIEVR--RVLGDGSAVDLVVAAELIELDGAA---HALVAST 934

Query: 436  EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
            +    +  ++ +      L   +EA         R   +++ N  +   F Y V   LR 
Sbjct: 935  DVTPLKRAEKALREANAALERRVEA---------RTNELVAANAELEA-FCYSVSHDLRA 984

Query: 496  PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
            P    ++  + +V+  Y   + +   +  L++I   + +  +L+   + + ++  + 
Sbjct: 985  PLRA-VDGFSQAVLEDYGPRLDAEG-QGFLKRIRGAAARMGELIDDLLTLSRVTRAD 1039


>gi|116052651|ref|YP_792966.1| putative kinase sensor protein [Pseudomonas aeruginosa UCBPP-PA14]
 gi|237651846|gb|AAM15534.2|AF482691_3 putative sensor kinase [Pseudomonas aeruginosa]
 gi|115587872|gb|ABJ13887.1| putative kinase sensor protein [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 1084

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 92/596 (15%), Positives = 194/596 (32%), Gaps = 41/596 (6%)

Query: 230 PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL-TSEESSLPEQEDFHTINLNQYTKKQY 288
           P P L + +   S            + ++           +  +     +  +       
Sbjct: 158 PAPQLLIFDLSGSTRLAVPSIPSTAQRDRLSGSYPMIVERILARLRTRPVGEDAQRVHWI 217

Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSF 348
                     + E L           +   E               +     L    P+F
Sbjct: 218 --RADRYRDSALEMLGVARVDLPETLWWHDEPNHLIIAASLLDLRRINDFEQLVE-RPAF 274

Query: 349 LLLTKYKSV-DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
              +      + +  A   + L D   L+       +     +              +  
Sbjct: 275 DSYSLVSPDGEVLLGAAPATGLRDGLNLTRQGVAVQLRSQPENGWLAVYRTDYGNF-FRH 333

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
              L    +             +              R++        ++++     + +
Sbjct: 334 SRWLVAGLLLTPALLLAGWLGMRWYTSSVVNPVHRAHRQLVESDTFSRTLIQTAPVALVV 393

Query: 468 INRE-GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
           + ++   +++ N   ++  G P E +         +                  +   + 
Sbjct: 394 LTQDDQQLVTCNHLAAQWLGGPTEILGLTSNWKLFD--------------ARGQVPGDIC 439

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
                     + L       +   +       +DI+   + +  LS+AK+ A+  S  K+
Sbjct: 440 IQV-----GGRYLQTAFAATRYAGTEAVLCVFNDITVHCEAETALSNAKRAADAASQAKT 494

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
            FLAR+SHEIRTPL  ++G              N R   Y   I  S   ++ +++D+LD
Sbjct: 495 LFLARMSHEIRTPLYGVLGT----LELLDLTTLNERQRAYLRTIQSSSATLMQLISDVLD 550

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVK 705
           +SKIE+G+M L     +  + V E +      A  K +         +P +++ D+  ++
Sbjct: 551 VSKIEAGQMALTLAAFNPLDLVREVLGNFAASAMAKDLQFYACIDTEVPAQLIGDVTRIR 610

Query: 706 QIALNILSNAIHFTPSGGQI-IISTTHTSNEEVIL--RVRDTGVGMTNYELEKAMKPFGQ 762
           Q+  N+++NA+ FT  G  +  +     ++   +L  +V DTG+G+ + + E+  + F Q
Sbjct: 611 QVLNNLVNNALKFTDIGRVVLRVKLLSRNDGRALLQWQVADTGIGIAHEQQERLFEAFYQ 670

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
           +  S      GTGLGL +   + +   G   + S    G+   ++        P D
Sbjct: 671 V--SGAHHAGGTGLGLSICWHLAEMMGGHLRMVSETGLGSSFSLVL-----ELPED 719


>gi|119944301|ref|YP_941981.1| hybrid sensory histidine kinase BarA [Psychromonas ingrahamii 37]
 gi|119862905|gb|ABM02382.1| Hpt sensor hybrid histidine kinase [Psychromonas ingrahamii 37]
          Length = 926

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 78/246 (31%), Positives = 127/246 (51%), Gaps = 11/246 (4%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L   KK A++ +  KS+FLA +SHE+RTPL  +IGF+  +   +         I+Y   
Sbjct: 276 ELDITKKKAQQAALVKSEFLANMSHELRTPLNGVIGFARQLLKTQLTTN----QIDYLQT 331

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I+RS   +L I+ND+LD SK+E+GK  L   P  L + + E + L+   A+EK + +   
Sbjct: 332 IERSAGNLLKIINDILDFSKLEAGKFTLEHIPFDLRDCIDETMHLLAPSAHEKNLELSLI 391

Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG---QI-IISTTHTSNEEVILRV--R 742
               +P  +  D   ++QI  N++ NAI FT  G    QI  I      + +V L++   
Sbjct: 392 VDPEVPYEVFGDAMRLQQILTNLIGNAIKFTEKGDIKIQIQRIEEQTNRDNKVTLKIMIS 451

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D+G+G++  +  +  K FGQ   S   +  GTGLGL + + +V    G+  + S P +G+
Sbjct: 452 DSGIGISKKQQAQLFKAFGQADTSITRQYGGTGLGLVITQKLVKEMQGRIELISIPEQGS 511

Query: 803 LIEIIF 808
                 
Sbjct: 512 TFGFTI 517


>gi|94264019|ref|ZP_01287820.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
 gi|93455612|gb|EAT05797.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
          Length = 555

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 91/507 (17%), Positives = 178/507 (35%), Gaps = 44/507 (8%)

Query: 314 YFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
              + ++      D   +   +      +   N     L    +  +I   G        
Sbjct: 80  ELQQAKDELEAIFDTTGVGISIIDQDFMVRRCNEKQRQLLVDPNRQEIIGHGCFEIYCAK 139

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
                +                   A L      ++    +   PF   ++         
Sbjct: 140 ESPGLDCPALETFAT--------GRAALARDVKKKDKYFNVVTTPFA-MDEDGAVSQVIE 190

Query: 433 IEPEDVDTRINKRKMEIEVM-------QLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
           +  +  + ++ +   + +         +L +++E+ S+G+ +I+  G I + NRA  ++ 
Sbjct: 191 VTLDITEKKLAELAEQRQRQFYLQEKDKLATVIESLSEGLLVIDPNGTITTCNRAAGQIT 250

Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
           G+   ++L +P                  ++ +      LE        EE+LL+     
Sbjct: 251 GHGETELLDRPLDQLFP--------SLAKQLTTGREAAGLEFTHRTPEGEERLLAADSNP 302

Query: 546 KKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
              P        +T  D++E K++   L  A+K+A           A V+HE+ TPL +I
Sbjct: 303 MPAPEDEPGGRVITFRDVTEEKKKAQLLFRAEKLA-----AIGQLSAGVAHELNTPLASI 357

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +G++ ++              E    I         I+  LL  ++  S        P  
Sbjct: 358 LGYARLLLKDDNLAAS---QRERLEIIAEQTRRSSTIIKALLSFAR-NSNHTGRSRHPCD 413

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
           L+  V  AI L+     ++RI +       +P ++AD   ++Q+ +N++ N +      G
Sbjct: 414 LNTIVERAIPLLTTDLEKRRIELVLELQP-LPPVIADPGELEQVVINLVLNGVQAIGGDG 472

Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
           +I + T       V+LRV D G G+      +   PF          GEGTGLGL +   
Sbjct: 473 RIRVGTAAQE-GRVLLRVEDNGPGIAPENRSRIFDPFFSTKP----VGEGTGLGLSICAG 527

Query: 784 MVDANMGKFYI-FSTPAKGTLIEIIFP 809
           ++D   G   +  S    G  + +  P
Sbjct: 528 IIDDLGGSIEVAASREG-GAALLVSLP 553



 Score = 39.6 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 23/256 (8%), Positives = 59/256 (23%), Gaps = 32/256 (12%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID +G +   +    +  G+   +++   L  +           +   L       G   
Sbjct: 233 IDPNGTITTCNRAAGQITGHGETELLDRPLDQLFP--------SLAKQLTTGREAAGLEF 284

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                     +    +  P+ +   E  G            +     L  R + K + + 
Sbjct: 285 THRTPEGEERLLAADS-NPMPAPEDEPGGR--VITFRDVTEEKKKAQLLFRAE-KLAAIG 340

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           ++  G                          +          D++  +++  L    E +
Sbjct: 341 QLSAGV---------------AHELNTPLASILGYARLLLKDDNLAASQRERLEIIAEQT 385

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
                    +                 S+   +  +           D  +      ++ 
Sbjct: 386 RRSSTIIKALLSFARNSNHT-----GRSRHPCDLNTIVERAIPLLTTDLEKRRIELVLEL 440

Query: 329 CPIPFFVYSHGNLFYA 344
            P+P  +   G L   
Sbjct: 441 QPLPPVIADPGELEQV 456


>gi|218247510|ref|YP_002372881.1| histidine kinase [Cyanothece sp. PCC 8801]
 gi|218167988|gb|ACK66725.1| histidine kinase [Cyanothece sp. PCC 8801]
          Length = 626

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 82/268 (30%), Positives = 141/268 (52%), Gaps = 8/268 (2%)

Query: 547 KLPFSSCYSLTMHDISEWKQEK-NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
           ++      ++ + D+ E  Q    ++  A + A+  +  KS+FLA  SHE+RTPL  IIG
Sbjct: 355 RIREVDQLAIAIQDMVERLQAWGEEVVSAWQEAQNANRLKSEFLATTSHELRTPLNGIIG 414

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
              ++K            +E+    +++   +L I++D+LD++KIE+GK+++  EPV L 
Sbjct: 415 CLHILKEGYCD--SKEEELEFLQQAEQAAVHLLGIIDDVLDLAKIEAGKLSVSLEPVDLT 472

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725
             +SE I+L  +   +KR+ + T    +   + AD + +KQ+ LN+L NAI FT  G  I
Sbjct: 473 SLLSEVINLQTITLQKKRLTLMTKINPHSIIVQADPKKLKQVILNVLGNAIKFTEKG-NI 531

Query: 726 IISTTHTSNEE---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
            I T    N     V + V+DTG+G+   + +K  +PF  +  S   +  GTGLGL +++
Sbjct: 532 TIKTHIEENNHQKQVCITVKDTGIGIDIKQQDKLFRPFVMVDGSTTRKYSGTGLGLAISR 591

Query: 783 AMVDANMGKFYIFST-PAKGTLIEIIFP 809
            ++    G   + S     GT ++I  P
Sbjct: 592 NLMQLMGGNITLSSEGIDLGTTVKICLP 619


>gi|153011989|ref|YP_001373201.1| multi-sensor hybrid histidine kinase [Ochrobactrum anthropi ATCC
           49188]
 gi|151563877|gb|ABS17372.1| multi-sensor hybrid histidine kinase [Ochrobactrum anthropi ATCC
           49188]
          Length = 1141

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 104/622 (16%), Positives = 220/622 (35%), Gaps = 24/622 (3%)

Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254
              +    +   L  +K+  ++   E       +         + V S            
Sbjct: 106 ERTRDNVGQRDRLGFLKQRIAAKLDEMAQTIDLRKTQGLSAALDLVRSDRGKVEMDAIRG 165

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
             +      +E  +    E          +           +      L           
Sbjct: 166 LVDAMSQTENEVRTSRLAEMDSAQQQALISTVLTAALGILLTVVIGYLLGKAAISRSREE 225

Query: 315 FDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
           + +   +             +   G         +  T   +        G         
Sbjct: 226 WLQTGKI--GLGSAMMGDQRIDELGENIL--DYLVAYTGAVAGAFFSGVRGHYRRTAVYG 281

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
           + D     P+     +     AS +   I  +      ++F      ++    +    + 
Sbjct: 282 IPD-IKSVPLEFVGREGLLGQASTQGSLIVLDDVPDGYLSFGSALGQDKPKYLVILPAVV 340

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
               +  +    ++    ++ S+L+  S+ I +      + + +          +E+  +
Sbjct: 341 EGSTNAVLEMGFLKPVDEKVLSLLKQASEAIGL-----SVQAASYRGE--LQNLLEETQQ 393

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554
           +   +  +     V N  L E   +     L      +        L     +L   +  
Sbjct: 394 QSEELQAQGEELRVNNEELEEQSRVLKESQLRLELQAAE-------LEQTNTQLEEQANQ 446

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                  S+ ++    +       E+ S +KSDFLA +SHE+RTPL + +  ++++ +  
Sbjct: 447 LEIQR--SDLERANASVQLKAAELERSSQYKSDFLANMSHELRTPLNSSLILAKLLADNP 504

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
              L +   ++YA  I  SGN +L+++ND+LD+SKIE+G + +  E  S+    +    +
Sbjct: 505 HENLTDE-QVKYARTIQSSGNDLLNLINDILDLSKIEAGHVEIQPEEASVVRLTNGLRQM 563

Query: 675 VQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
            +  A+EK++    S   ++P     D R ++QI  N++SNAI FT  G ++ +S     
Sbjct: 564 FEPVASEKQLEFIISLDEHLPKTFETDPRRLEQILKNLISNAIKFTEKG-KVELSVRPQG 622

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
           +++++  V D+G+G+   +L    + F Q  ++   R  GTGLGL +++ +V    G   
Sbjct: 623 SDKIVFSVADSGIGIAEDQLNSIFEAFHQADSTISRRFGGTGLGLSISRQLVRLLAGTIA 682

Query: 794 IFSTPAKGTLIEIIFPLYDTSH 815
           + S P +G+   +  PL   S 
Sbjct: 683 VESKPGQGSRFSVTLPLRQMSA 704


>gi|296107504|ref|YP_003619205.1| sensory box histidine kinase/response regulator [Legionella
           pneumophila 2300/99 Alcoy]
 gi|295649406|gb|ADG25253.1| sensory box histidine kinase/response regulator [Legionella
           pneumophila 2300/99 Alcoy]
          Length = 909

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 79/248 (31%), Positives = 129/248 (52%), Gaps = 12/248 (4%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E K  +  L   K    ++S  KS+F+A +SHEIRTP+  +IGF+ V+   +  PL    
Sbjct: 277 EEKNIELSLEKKKTE--EKSRQKSEFIANMSHEIRTPMNGVIGFTNVLLESKLDPL---- 330

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
            ++Y   I  S   +L I+ND+LD SKI++GK+NL   P+ +   + E +SL    A++K
Sbjct: 331 QLDYVKTIKSSAQDLLSIINDILDFSKIDAGKLNLDCIPLDIRGCIDEVLSLASPNAHKK 390

Query: 683 RILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----V 737
            I +      N+P  +L D   +KQI  N+++NA+ FT  G  ++I T      +    +
Sbjct: 391 GIDLIPITDINVPKMVLGDPLRIKQIISNLVTNAVKFTDHG-YVLIRTKIEQETDKDYTL 449

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
           +  + DTG+G++  +  K    F Q   S   R  G+GLGL + K + +   G+  + S 
Sbjct: 450 LFAITDTGIGISPEDQTKLFTAFNQADTSITRRYGGSGLGLVICKKLCEEMHGRISLTSE 509

Query: 798 PAKGTLIE 805
             KG+   
Sbjct: 510 INKGSTFS 517


>gi|224370167|ref|YP_002604331.1| PhoR [Desulfobacterium autotrophicum HRM2]
 gi|223692884|gb|ACN16167.1| PhoR [Desulfobacterium autotrophicum HRM2]
          Length = 505

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 93/537 (17%), Positives = 192/537 (35%), Gaps = 44/537 (8%)

Query: 282 QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNL 341
           +    +    + + S          +      +  E        ++  PI   +      
Sbjct: 2   ERLNPEKIVVIDDESSLREGAQRILSRMGYEVFLAERGEEGLNIINSHPISIALLD---- 57

Query: 342 FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401
                  + +     ++ ++    ++  +    ++    ++  +         A      
Sbjct: 58  -------MKMPGMDGMEVLKEIMAMNRGIIVIVITGYATVETAIQAMKMG---AYDFIPK 107

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
             + +         +             +   +  + + R     +  E  ++ +ILE+ 
Sbjct: 108 PYEPD--------QLRMVIKRANETLRLKINAQRMERERRRTLADLNTEQSRIHTILESL 159

Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVED-ILRKPFTVFLEQNTPSVMNHYLTEILSLD 520
            +G+ + + +G ++  N A  KL     +  +  K     + +         L   +S  
Sbjct: 160 PNGVLVTDSQGEVVLLNPACYKLLHIDTDKKVPGKKPAGSICEYVNDEEVCALVMDISRG 219

Query: 521 LRQTLEKIT--LGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKK 576
                  I         E  L +                + + DIS  K           
Sbjct: 220 RYIDYNDIPSKEIKISNETYLLVLCRPVLGEKKECMGTVVNIMDISTIKVL--------- 270

Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
                   KS+F+A+VSHE+R+PL+ I    +++       +G        +        
Sbjct: 271 -----DQLKSEFVAKVSHELRSPLSTIHEQLKMVMGGLGQTIGGDDQ-HLLSRAREKTGG 324

Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN-IP 695
           ++  + DLLD+S+IE+G      + V LD+ +      +++ A  K+  +  +     +P
Sbjct: 325 LISTIGDLLDLSRIEAGMEIKELKEVQLDDLLKAICEFLEVRAAAKQQTLTFTPPETPVP 384

Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755
            I  D  +++ +  N++SNAI +TP  G I +  T T    + +RV+D G G+    ++K
Sbjct: 385 PIKGDPLALESVFGNLISNAIIYTPEKGTIQVDCTVT-GTNLRVRVKDNGFGIDARYMDK 443

Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
             + F +I N +     GTGLGLP+ K +VDA  G   + S   +GT   +I PL  
Sbjct: 444 IFERFYRIKNERTRYITGTGLGLPIVKGIVDAMNGYIDVESEVNQGTTFTVILPLKQ 500


>gi|145600096|ref|YP_001164172.1| phosphate regulon sensor protein [Yersinia pestis Pestoides F]
 gi|145211792|gb|ABP41199.1| PAS/PAC sensor signal transduction histidine kinase [Yersinia
           pestis Pestoides F]
          Length = 439

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 66/359 (18%), Positives = 132/359 (36%), Gaps = 36/359 (10%)

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRKPFTVFLEQNTPSVMNH 511
           +  S  E+  D + I   +G I   N    +L G+    +   +     L     S    
Sbjct: 99  RFRSGAESLPDAVVITTVDGNIFWCNGLAQQLLGWFRWPEDNGQHILNLLRYPEFSQYL- 157

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571
                     +QT  +           +  R++           +   D+++ +Q +   
Sbjct: 158 ---------QQQTFSRPLTLQLNNGYYVEFRVMPY---SEGQLLMVARDVTQMRQLEG-- 203

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
                        + +F A VSHE+RTPLT + G+ E++ +Q        +       + 
Sbjct: 204 ------------ARRNFFANVSHELRTPLTVLQGYLEMMHDQELAGPLRDKA---LGTMQ 248

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN-EKRILIRTSF 690
                +  +V  LL +S+IE+       E V +   +      VQ  +N    I  R + 
Sbjct: 249 EQTKRMDGLVKQLLTLSRIEAAPNVDLNERVDIPLMLKILQHEVQALSNGRHEITFRVN- 307

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
             +  ++  +   ++    N++ NA++ TP G +I +    T       +V D G G+  
Sbjct: 308 --DQLKVFGNEDQLRSAVSNLVYNAVNHTPEGTKIEVCWQQTPQG-AQFQVSDNGPGIPP 364

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             + +  + F ++  ++  +  G+GLGL + K  +  +  +  + S    GT      P
Sbjct: 365 EHVPRLTERFYRVDKARSRQTGGSGLGLAIVKHALSHHDARLEVMSEIGLGTRFIFTLP 423


>gi|189423458|ref|YP_001950635.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189419717|gb|ACD94115.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 1068

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 111/628 (17%), Positives = 228/628 (36%), Gaps = 49/628 (7%)

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
              +  + +H      +   +     + Q+       +  +V+           ++   K
Sbjct: 201 AQQQHLATMHSTVSQVTDATQALLGDWLQRRLDSVNAVAKEVAVPLGASPETRRLMSLIK 260

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
                     L +Q+    ++L           +  +  +  E L +      +A   EG
Sbjct: 261 QSDPVLLRLGLSDQQGKELLHLTSDVIHGSVKNMPADRSQIREPLKNGMPYLGTAVPLEG 320

Query: 319 ENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
                ETV     P      G +     + + + + +   D  ++     L     L  +
Sbjct: 321 LLGAGETVATIGQPVI--RGGRVVGVVTALIPVIRLQERCDFVVSRRNVRL---SVLDGS 375

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
                +    +          +H  +      LA+    +         + Q  +  E  
Sbjct: 376 GTPLAMSSGSAANKLAPGLHAVHPPKRPGVPWLALMSQAYLANRIPLNAVQQWDLVVEVP 435

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
                +      + ++  IL      + ++     +   +R  +K        +      
Sbjct: 436 YRPGLEEINRRAIREMSMIL-----ALMLL-----VCMASRIATKALSLTAFRL------ 479

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT- 557
                     +   L+  +S          T     +    +L   +K++  S   +   
Sbjct: 480 --------RQVTEQLSWQISRGTMPVWPAPTFLREID----ALSNNVKEMAESLGQTFFE 527

Query: 558 MHDISEW--KQEKN---KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
           +  ++E   K+ +    +L+ AK+ AE  +  KS FLA +SHEIRTP+  I+G + ++K 
Sbjct: 528 LKTVNEQLEKRIEERTKELADAKQAAEAANEAKSRFLAVMSHEIRTPMNGIMGINNLLKQ 587

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
            +  P       E   Y   S + +L I+ND+LD SKIE+ K+ L      L   +    
Sbjct: 588 SQLTP----DQRELLGYASDSADALLLIINDILDFSKIEANKLELCPSVFRLGRLMESLC 643

Query: 673 SLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ---IIIS 728
           ++ QL A++K + +   +   +P  +  D   ++Q+  N+L+NAI FT  G     +   
Sbjct: 644 NMYQLVADKKGLRLVCDYDRELPELVTGDQDRLRQVLTNLLNNAIKFTRQGEVRLWVHRL 703

Query: 729 TTHTSNEEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
           ++ +++  + +  +V D+G+G+   + E+    F Q  +S      GTGLGL + K++V 
Sbjct: 704 SSSSADGMLRIAFQVTDSGIGIAPEKQERIFDMFSQADSSTTREFGGTGLGLAICKSLVG 763

Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
              G   + STP  G+   +  P    +
Sbjct: 764 LMGGTIQVTSTPGVGSTFRVELPFSPAA 791


>gi|52842130|ref|YP_095929.1| sensory box histidine kinase/response regulator [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|52629241|gb|AAU27982.1| sensory box histidine kinase/response regulator [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
          Length = 910

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 79/248 (31%), Positives = 129/248 (52%), Gaps = 12/248 (4%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E K  +  L   K    ++S  KS+F+A +SHEIRTP+  +IGF+ V+   +  PL    
Sbjct: 278 EEKNIELSLEKKKTE--EKSRQKSEFIANMSHEIRTPMNGVIGFTNVLLESKLDPL---- 331

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
            ++Y   I  S   +L I+ND+LD SKI++GK+NL   P+ +   + E +SL    A++K
Sbjct: 332 QLDYVKTIKSSAQDLLSIINDILDFSKIDAGKLNLDCIPLDIRGCIDEVLSLASPNAHKK 391

Query: 683 RILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----V 737
            I +      N+P  +L D   +KQI  N+++NA+ FT  G  ++I T      +    +
Sbjct: 392 GIDLIPITDINVPKMVLGDPLRIKQIISNLVTNAVKFTDHG-YVLIRTKIEQETDKDYTL 450

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
           +  + DTG+G++  +  K    F Q   S   R  G+GLGL + K + +   G+  + S 
Sbjct: 451 LFAITDTGIGISPEDQTKLFTAFNQADTSITRRYGGSGLGLVICKKLCEEMHGRISLTSE 510

Query: 798 PAKGTLIE 805
             KG+   
Sbjct: 511 INKGSTFS 518


>gi|54297835|ref|YP_124204.1| transmission sensor LetS [Legionella pneumophila str. Paris]
 gi|53751620|emb|CAH13039.1| Legionella transmission sensor LetS [Legionella pneumophila str.
           Paris]
          Length = 910

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 79/248 (31%), Positives = 129/248 (52%), Gaps = 12/248 (4%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E K  +  L   K    ++S  KS+F+A +SHEIRTP+  +IGF+ V+   +  PL    
Sbjct: 278 EEKNIELSLEKKKTE--EKSRQKSEFIANMSHEIRTPMNGVIGFTNVLLESKLDPL---- 331

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
            ++Y   I  S   +L I+ND+LD SKI++GK+NL   P+ +   + E +SL    A++K
Sbjct: 332 QLDYVKTIKSSAQDLLSIINDILDFSKIDAGKLNLDCIPLDIRGCIDEVLSLASPNAHKK 391

Query: 683 RILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----V 737
            I +      N+P  +L D   +KQI  N+++NA+ FT  G  ++I T      +    +
Sbjct: 392 GIDLIPITDINVPKMVLGDPLRIKQIISNLVTNAVKFTDHG-YVLIRTKIEQETDKDYTL 450

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
           +  + DTG+G++  +  K    F Q   S   R  G+GLGL + K + +   G+  + S 
Sbjct: 451 LFAITDTGIGISPEDQTKLFTAFNQADTSITRRYGGSGLGLVICKKLCEEMHGRISLTSE 510

Query: 798 PAKGTLIE 805
             KG+   
Sbjct: 511 INKGSTFS 518


>gi|329909981|ref|ZP_08275168.1| multi-sensor hybrid histidine kinase [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327546346|gb|EGF31363.1| multi-sensor hybrid histidine kinase [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 732

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 75/272 (27%), Positives = 129/272 (47%), Gaps = 12/272 (4%)

Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
             + L    +   +Q+  +    K+ AE+ ++ KS FLA +SHEIRTP+  I+G +E++ 
Sbjct: 319 GAFILMAIILKRREQDAEQALTLKREAEEANTAKSSFLAMMSHEIRTPMNGILGMAELML 378

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
           +       +     YA  +    + ++ I+N++LD SK+ESG M +          + E 
Sbjct: 379 DTPL----DASQRTYAGNVYNGAHHLMRIINEILDFSKVESGYMEIDLTTFDPTRLIGEV 434

Query: 672 ISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
           I L +  A  K++ IRT  A      + AD   ++Q+  N+++NAI FTP+G  I +   
Sbjct: 435 IGLHRNGATAKQLQIRTEIAPAAALLVSADASRIRQVLGNLINNAIKFTPAGA-ITVRFV 493

Query: 731 HTSNE------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
              +       ++   V D+G+G++    ++  +PF Q  N+   +  GTGLGL + K +
Sbjct: 494 ALPDPADATQVQLEFSVADSGIGISAEAQQRLFEPFVQADNTISRKYGGTGLGLAICKRL 553

Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           V+   G     S    GT      P      P
Sbjct: 554 VELMRGDIRCESDIGAGTRFSFRIPARMVEQP 585


>gi|302670412|ref|YP_003830372.1| two component system histidine kinase/response regulator hybrid
           protein [Butyrivibrio proteoclasticus B316]
 gi|302394885|gb|ADL33790.1| two component system histidine kinase/response regulator hybrid
           protein [Butyrivibrio proteoclasticus B316]
          Length = 1269

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 69/253 (27%), Positives = 133/253 (52%), Gaps = 9/253 (3%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I+  +  +      ++ A   +  KS+FLA +SHEIRTP+ A++G +EVI  +      +
Sbjct: 633 ITILRATETA-RMEERRARAANEAKSNFLANMSHEIRTPINAVLGMNEVILREC----KD 687

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
            + +EYA  I+ +G  +L ++ND+LD SKIE+G M +          +++  ++V + A 
Sbjct: 688 EKILEYAQNIEGAGRTLLSLINDILDFSKIEAGSMEITEAEYDFSSVLNDVYNMVHIKAE 747

Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE--- 736
           +K + ++     ++P  +  D   ++QI +N+L+NA+ +T  GG  + +T      +   
Sbjct: 748 QKILDLKFDIDEDLPDTMYGDEMRLRQIIVNVLNNAVKYTEEGGVTLEATGIRDYGDTIT 807

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           + +++ DTG G+   EL      F ++   +    EG+GLGL +  ++++   G   + S
Sbjct: 808 LKIKITDTGKGIKKEELPTLFDKFKRLDAEKNRTIEGSGLGLAITHSLLELMGGSIMVDS 867

Query: 797 TPAKGTLIEIIFP 809
              KG+   I+ P
Sbjct: 868 VYGKGSTFTIVLP 880


>gi|152992352|ref|YP_001358073.1| hypothetical protein SUN_0758 [Sulfurovum sp. NBC37-1]
 gi|151424213|dbj|BAF71716.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 501

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 89/244 (36%), Positives = 133/244 (54%), Gaps = 6/244 (2%)

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
             L  A   A+  S  KS+FLA +SHEIRTP+T I+GF E +  +   P    R  ++ N
Sbjct: 110 KDLQQANIDAQIASETKSEFLANMSHEIRTPMTGILGFVEQLAKKENDP---ERLRQF-N 165

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I +SG  +L I+ND+LD+SKIESGKM L  +P  L +   + I+L       K I +  
Sbjct: 166 IITKSGQTLLSIINDILDLSKIESGKMTLEPQPTDLHKLFDDTITLFDELIKSKNIDLHK 225

Query: 689 SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV-ILRVRDTGV 746
                +P+ ++ D    KQ+ LN+LSNAI FTPSGG I +  ++    ++    V+DTG+
Sbjct: 226 EIDEKLPKCLIIDQLRFKQVILNLLSNAIKFTPSGGSISLQASYDHTTQILQCAVQDTGL 285

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+    LEK    F Q   S   R  GTGLGL ++  ++    G+ ++ ST  +G+   +
Sbjct: 286 GIGKEHLEKIFHAFAQEDTSTTRRYGGTGLGLTISSKLLHMMKGQIHVQSTLGEGSRFYL 345

Query: 807 IFPL 810
             P+
Sbjct: 346 DVPV 349


>gi|312967521|ref|ZP_07781736.1| signal transduction histidine-protein kinase atoS [Escherichia coli
           2362-75]
 gi|312287718|gb|EFR15623.1| signal transduction histidine-protein kinase atoS [Escherichia coli
           2362-75]
          Length = 605

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 83/371 (22%), Positives = 171/371 (46%), Gaps = 28/371 (7%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            + +         I+E  +DG+  I+R+G + + N A   + GY   +++ +P+++    
Sbjct: 251 AQALRETRTLNDLIIENAADGVIAIDRQGDVTTMNPAAEVITGYQRHELVGQPYSMLF-- 308

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMH 559
              +     + + L                ++ + + L +   ++  +        +   
Sbjct: 309 -DNTQFYSPVLDTLEHGTEHV-ALEISFPGRD-RTIELSVTTSRIHNTHGEMIGALVIFS 365

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           D++  K+ + +++ A+++A        + +A V+HE+R PLTAI G+ ++++ Q   P+ 
Sbjct: 366 DLTARKETQRRMAQAERLAT-----LGELMAGVAHEVRNPLTAIRGYVQILRQQTRDPI- 419

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
              + EY + + +  + +  ++  LL+ S+    +    ++ VSL+  V E + LVQ   
Sbjct: 420 ---HQEYLSVVLKEIDSINKVIQQLLEFSRPRHSQ----WQQVSLNALVEETLVLVQTAG 472

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
            + R+   +   N +  I AD   +KQ+ LNIL NA+    + G+I I T   S+ +  +
Sbjct: 473 VQARVDFISELDNELSPINADRELLKQVLLNILINAVQAISARGKIRIRTWQYSDSQQAI 532

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            + D G G+     +K   PF     S      GTGLGL L++ +++A+ G   + S P 
Sbjct: 533 SIEDNGSGIDLSLQKKIFDPFFTTKAS------GTGLGLALSQRIINAHQGDIRVASLPG 586

Query: 800 KGTLIEIIFPL 810
            G    +I P+
Sbjct: 587 YGATFTLILPI 597



 Score = 40.4 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/117 (10%), Positives = 37/117 (31%), Gaps = 6/117 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G +  ++       G    +++G     +    +    + + D L+          
Sbjct: 275 IDRQGDVTTMNPAAEVITGYQRHELVGQPYSMLF--DNTQFYSPVLDTLEHGTEHVALEI 332

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
            +P     + + +  +   I++ + E  G     I        + +    + ++  +
Sbjct: 333 SFPGRDRTIELSVTTS--RIHNTHGEMIGA--LVIFSDLTARKETQRRMAQAERLAT 385


>gi|222526335|ref|YP_002570806.1| PAS/PAC sensor signal transduction histidine kinase [Chloroflexus
           sp. Y-400-fl]
 gi|222450214|gb|ACM54480.1| PAS/PAC sensor signal transduction histidine kinase [Chloroflexus
           sp. Y-400-fl]
          Length = 425

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 83/436 (19%), Positives = 178/436 (40%), Gaps = 47/436 (10%)

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
           +A    +   + ++++  ++   P     Q    +     E    D+ +    +  + + 
Sbjct: 15  LAVGFIVSMYRRHQKSHSSLVDHPSPPGTQEHSMISSARSETITSDSHLALLAIHRQPLF 74

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
           L ++  A   G+ +IN E  I+  N     L             T+  +     + +  L
Sbjct: 75  L-ALAAAIDTGVIVINTERRIVFHNDTALHLLATQSPMQDSGLITLLRDHQADQLASDVL 133

Query: 514 TEILSLDLRQTLEKITLGS-TKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNK 570
           ++           +          + L L  +  +          +T+ D+++    +  
Sbjct: 134 SD--------GEHRELTIRPIATGRTLHLHYVPLREGGGKPVGALITIRDLTQISMLE-- 183

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
                         + D +A VSHE+RTPL ++    E ++                  +
Sbjct: 184 ------------RARRDLVANVSHELRTPLASLKLLVETVQ----SAPPPDIASRMLEQM 227

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
            +  + V  +V++L ++S++ESG+++L  EP+ +   +  A+  ++  A+ K+ +I    
Sbjct: 228 AQEIDAVTQLVDELHELSRLESGRVSLKLEPLPVWPVIERAVERIRPQADRKQQVICVEP 287

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT---HTSNE------------ 735
           A ++P  L D   + Q+ LN+L NA+ FTP GG I ++        +E            
Sbjct: 288 AADLPLALMDGDRIGQVLLNLLHNAVKFTPEGGTITVAAEVLTLRDDEQPSRPDRPPHPA 347

Query: 736 --EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
              +++RV DTG+G+ N ++++  + F ++  ++     GTGLGL +AK +V+ + G+ +
Sbjct: 348 GTWLLIRVSDTGIGIPNRDIQRIFERFYKVDRARTRHAGGTGLGLAIAKHLVEGHGGRIW 407

Query: 794 IFSTPAKGTLIEIIFP 809
             S    G+      P
Sbjct: 408 ASSQEGHGSTFWFTLP 423


>gi|75674313|ref|YP_316734.1| Signal transduction histidine kinase [Nitrobacter winogradskyi
           Nb-255]
 gi|74419183|gb|ABA03382.1| signal transduction histidine kinase [Nitrobacter winogradskyi
           Nb-255]
          Length = 939

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 105/780 (13%), Positives = 225/780 (28%), Gaps = 78/780 (10%)

Query: 81  RTVRFTWNIDAHGYLKEISEELPKTIGN-YAFKMIGMRLCDVSDILHIDPNNHIGDLLKR 139
             +   W  D    ++  ++   +T+G       +G +  +    +       I  ++  
Sbjct: 55  HPMFIWWGSDL---IQFYNDAYRQTLGPERHPGALGQKGRECWAEIWDIIGPQIEYVMSG 111

Query: 140 QNTWYGKTTLWPI--EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNR--------- 188
           +   + +  L P+   G    V       PI        G     +              
Sbjct: 112 RGATWHEEQLVPVTRNGRLEQVYWTYGFSPIDDEEG-VGGV--LVVCRDVTREHLARMAL 168

Query: 189 -VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247
                  A  + + +      +++ GH S +  +Y              +          
Sbjct: 169 QERETELARVQAIGRIGGLEVDLRTGHRSRKSPEYLKIHGLPSDAVHESREDWLR----R 224

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTI---NLNQYTKKQYFGTLQNNSKES----F 300
            H DD    E   +             +  I   +             ++   ++     
Sbjct: 225 VHPDDRAVAEGQFIDAIRGGDREYAVRYRIIRPNDGETRWISARSVIERDADGKAIRLFG 284

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDD 359
            ++   +         + E       +  P   +   S G+  + N  F      +    
Sbjct: 285 AHIDITDQVEAERSIRQREQEFRTLAEALPHHVWTATSDGSFNWFNRRFYDYVGARP--- 341

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
               GG              A        +         RL   + +             
Sbjct: 342 -GEPGGNDWNRIVHPDDAPAAAAARTRAVTSGEPYEIEFRL---RRSDGVYHWFLSRALP 397

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKM-----------EIEVMQLCSILEATSDGIAII 468
             ++    +   G + +  D +    K+           E +  +   I   + D + ++
Sbjct: 398 ARDEDGRIIRWIGTDTDVHDQKRIAAKLAELNATLAERVEEKTRERDRIWNVSQDLLLVM 457

Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528
           ++ GI  S N A ++  G+   ++  +        +        +  +       T+   
Sbjct: 458 DQHGIWRSVNPAWTRTLGWSEAELTERTAEWIEHPDDIVKTRVEVRRLARGKA--TVRFE 515

Query: 529 TLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES--SHKS 586
                K+     L          +       D++  K    +L  A++   +        
Sbjct: 516 NRLRHKDGSYRWLSWTAVP--DQNLIYAVARDVTAEKAAAERLRAAEEALRQSQKMEAVG 573

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
                ++H+    LT I+G  + +           R   Y      S N    + + LL 
Sbjct: 574 QLTGGIAHDFNNLLTGIVGSLD-LLQTHIKQGRTDRAGRYIEAAMASANRAAALTHRLLA 632

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706
            ++    +  L  +PV  ++ +     L++    E  I ++ + +  +   L D   ++ 
Sbjct: 633 FAR----RQPLVPKPVDANQLILSLEDLLRRTIGEA-IELKIAPSKLLWPTLCDPNQLES 687

Query: 707 IALNILSNAIHFTPSGGQIIISTT-------------HTSNEEVILRVRDTGVGMTNYEL 753
             LN+  NA    P+GG++ I+T                  + + + V DTG GMT    
Sbjct: 688 ALLNLAINARDAMPNGGRLTIATANVSLDTAGSGSSTRQPGDYICITVADTGTGMTADVA 747

Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
            +A  PF          G GTGLGL +       + G   + + P +GT I +  P +D+
Sbjct: 748 ARAFDPFFTTKP----IGHGTGLGLSMIYGFARQSNGHIALDTAPGRGTSISLSLPRHDS 803


>gi|13487136|gb|AAK27436.1| putative two-component histidine kinase Fos-1 [Aspergillus
           fumigatus]
          Length = 708

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 93/529 (17%), Positives = 194/529 (36%), Gaps = 36/529 (6%)

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLT 352
           + ++ S          + +       +         P+P  +      +   + S L   
Sbjct: 42  DTAEPSQTPRCDTPREAHTEIVQNDTSSLNRIFRFTPVPTLILDSSLRVIEVSESHLAFC 101

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS-ARLHTIQWNRENSL 411
                  +  +     L   P          + +  + R         L  I     +  
Sbjct: 102 GKSRDFVLGASIYELPLATIPAPDIATLNGALHVAITTRAVQVVETIHLPRIS----SYF 157

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINR 470
           ++   P  + +     + +           ++   +         +++   D  I +++ 
Sbjct: 158 SLKITPIFQGSTLLNLVLEAHNVTRTHTESLHNAYI---NETYKILVDTIRDYAIFMLDA 214

Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH--YLTEILSLDLRQTLEKI 528
            G I++ N   + + GY  ++I+ + F+VF              L   L       +E  
Sbjct: 215 RGNIVTWNSGAAIIKGYKADEIIGRHFSVFYGPEDRLADKPGKELELCLRDGK---VEDE 271

Query: 529 TLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
                ++       ++I  +        +     D++E K  + ++       E+ S  K
Sbjct: 272 GWRYRQDGLRFWANVMITPIFSFGRHVGFVKITRDLTERKAAEARMV---AAFEESSKMK 328

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
           SDFLA +SHEIRTP+  +     ++ +         +  EY + I+ S +++L ++ND+L
Sbjct: 329 SDFLANMSHEIRTPMNGMHLALTMLGSTELDT----QQREYTSIIEDSMSILLQVINDVL 384

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSV 704
           D SK+ SG  +L+ + +S++  V   +   +  A    + I  S     P++   D    
Sbjct: 385 DYSKLSSGTFSLNTDVLSVENIVGAVVRNCK--ALNPAVEISCSMPPGFPKLLRGDPLRY 442

Query: 705 KQIALNILSNAIHFTPSGGQIIIS----TTHTSNEEVIL--RVRDTGVGMTNYELEKAMK 758
           +Q+  N++ NA+ FT  G  + ++             I+   V DTG+G+    +     
Sbjct: 443 RQVIQNLVGNAMKFTEKG-HVKVTHRFAVEEHDANRYIITTEVTDTGIGVPEDAINTLFT 501

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP-AKGTLIEI 806
           PF +  +S   R +GTGLGL + K++ +   G       P  KG+   +
Sbjct: 502 PFTRFADSATKRYQGTGLGLSICKSLAELMDGSVGYKPNPEGKGSCFWL 550



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 44/142 (30%), Gaps = 10/142 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH--IDPNNHIGDLLKRQNTW 143
            + +DA G +   +       G  A ++IG              D      +L  R    
Sbjct: 209 IFMLDARGNIVTWNSGAAIIKGYKADEIIGRHFSVFYGPEDRLADKPGKELELCLRDGKV 268

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +   +  +G  L    ++   PI+S  R        G V + R   + +A   R+   
Sbjct: 269 EDEGWRYRQDG--LRFWANVMITPIFSFGRHV------GFVKITRDLTERKAAEARMVAA 320

Query: 204 FSHLHEIKKGHSSVEKEKYDIF 225
           F    ++K    +    +    
Sbjct: 321 FEESSKMKSDFLANMSHEIRTP 342


>gi|28899341|ref|NP_798946.1| hybrid sensory histidine kinase BarA [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260878968|ref|ZP_05891323.1| signal transduction histidine-protein kinase BarA [Vibrio
           parahaemolyticus AN-5034]
 gi|260898315|ref|ZP_05906811.1| signal transduction histidine-protein kinase BarA [Vibrio
           parahaemolyticus Peru-466]
 gi|28807577|dbj|BAC60830.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|308085236|gb|EFO34931.1| signal transduction histidine-protein kinase BarA [Vibrio
           parahaemolyticus Peru-466]
 gi|308090507|gb|EFO40202.1| signal transduction histidine-protein kinase BarA [Vibrio
           parahaemolyticus AN-5034]
          Length = 932

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 82/252 (32%), Positives = 131/252 (51%), Gaps = 10/252 (3%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  AKK A++ +  KS+FLA +SHE+RTPL  +IGF+  +   +          +Y   
Sbjct: 276 ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLSN----SQTDYLQT 331

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I++S N +L+I+ND+LD SK+E+GK+ L   P    E++ E I+L    A+EK + I   
Sbjct: 332 IEKSANNLLNIINDILDFSKLEAGKLALENIPFDFRESLEEVINLQATSAHEKGLEITLK 391

Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT----SNEEVILRVRDT 744
               IP  ++ D   ++QI  N++ N+I FT  G  I +S         + E+   VRDT
Sbjct: 392 VDPKIPPGLVGDPLRIQQILTNLVGNSIKFTERG-NIDVSVEMRSQAGDSVELQFMVRDT 450

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G++  +  +  + F Q   S   R  GTGLGL + + +V    G+  + S   +G+  
Sbjct: 451 GIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTF 510

Query: 805 EIIFPLYDTSHP 816
                L  T  P
Sbjct: 511 WFTLRLNSTEMP 522


>gi|3123890|gb|AAC38448.1| sensor kinase [Vibrio cholerae]
          Length = 1146

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 90/382 (23%), Positives = 160/382 (41%), Gaps = 24/382 (6%)

Query: 441 RINKRKMEIEVMQLC---SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP- 496
           R +++  ++   QL     +L+A    I I + +G ++ TN A  K++    E    +P 
Sbjct: 481 RSSEQVAKLSTEQLRWLTELLDAIPSMIFISDAKGEVVLTNAAYRKIYYTCCEKGCVQPQ 540

Query: 497 --FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554
              +     +        + +    +         +             I   +     Y
Sbjct: 541 PECSFLALPDQHEAEFSIIIQAPKSNCSIGEHYFHVTRRA---------ISHPINQRKYY 591

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
               +DI+E K+ +  L  + + A +    ++ FLA VSHE+RTP+ A++G  E++ ++ 
Sbjct: 592 LTLFNDITELKETEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGLMEILASR- 650

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
              L +            S   +   VND+LD SKIE+ ++ L     +L + +   +  
Sbjct: 651 ---LKSSESQLLLTNAISSAERLKLHVNDILDFSKIEAQQLQLDIGLYNLADELGPLLRG 707

Query: 675 VQLYANEKRILIRTSFANN-IPRILADLRSVKQIALNILSNAIHFTPSGGQI-IISTTHT 732
            +  A  K I     ++ N +     D     QI  N+LSNAI FT  G  +  I     
Sbjct: 708 FEASAQLKEIEFDVIWSPNSLLLANFDALRFNQIVTNLLSNAIKFTDQGRVVFKIDVAPE 767

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
               + + V DTG GMT  ++E    PF Q  ++   R  GTGLG+ +   +++   GK 
Sbjct: 768 ---MLTIAVEDTGCGMTQTQIESLFVPFAQADSTITRRFGGTGLGMSIVANLIELMNGKI 824

Query: 793 YIFSTPAKGTLIEIIFPLYDTS 814
            + S   +GT I++  PL   +
Sbjct: 825 EVKSEFEQGTQIQVNLPLVTQT 846


>gi|312796535|ref|YP_004029457.1| sensory transduction protein kinase [Burkholderia rhizoxinica HKI
           454]
 gi|312168310|emb|CBW75313.1| Sensory transduction protein kinase (EC 2.7.3.-) [Burkholderia
           rhizoxinica HKI 454]
          Length = 667

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 90/479 (18%), Positives = 177/479 (36%), Gaps = 24/479 (5%)

Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIA--ASARLHTIQWNRENSLAMTF 415
           + +     L   L  P+   +     V         +A   S     I+  R     +  
Sbjct: 46  EPLPDLLVLDYRLGTPQTGLDFFRGLVARGIKLPAILATGFSDESRIIEALRAGVSDVVP 105

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
              +  +  PE + +   E +         +M        +I EA    +      G   
Sbjct: 106 KAADYLDYLPEAVERALNEAQMRRVVAESERMRDRERHYRTIAEALPHLVWTCTPGGECD 165

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
             +R  S   G P    L   +   +  +   ++     + +       + +       +
Sbjct: 166 FLSRQWSDYTGMPAGAELGAGWFDAVHVDDLPMLRDAWRQTVGRGADSFI-REVRLRRHD 224

Query: 536 EKLLSLRIIIKKLPFSSC----YSLTMHDIS-------EWKQEKNKLSHAKKIAEKESSH 584
                  +    L  +      +  T  DI        E ++       A++ AE+ +  
Sbjct: 225 GVYRWFCLRGTALREADGRIAKWFGTCTDIQDQREASDERERLLQSEQAARQAAEEANRA 284

Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
           K  FLA +SHE+RTPLT ++  + +++  R  P            I R+  L   +++DL
Sbjct: 285 KDRFLAMLSHELRTPLTPVLASARMLERARDVP---EPVRSAMKIIRRNIELEARLIDDL 341

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704
           LD++++ +GK+ L  E V + E +   + + +     K++ +          + AD   +
Sbjct: 342 LDLTRVANGKLLLALETVDVHELIDAVLEIFRSDIQVKQLRVELDCTAQHRFVRADRARL 401

Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTS------NEEVILRVRDTGVGMTNYELEKAMK 758
           +Q+  N++ NA  FTP  G+I++ T            ++ + V+D+G+G+   +L +   
Sbjct: 402 QQMLWNLIKNAAKFTPEHGRIVLRTRDAEVPSETGAPQIQIDVQDSGIGIAPEQLGRLFN 461

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFPLYDTSHP 816
            F Q       +  G GLGL + KA+ D + G  +  S    +G    I+ P  +   P
Sbjct: 462 AFEQGGQHTTQQYGGLGLGLAITKALTDVHGGTVHAASEGLGRGATFTIVLPSVEAPGP 520



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/322 (8%), Positives = 72/322 (22%), Gaps = 18/322 (5%)

Query: 27  KKKIDNGFETEKSKKENPCHDSFEQSNFT-------DQNQESVSNTNYLDSENTFVFDPI 79
           + +I        S       D  +             Q +  V+ +  +           
Sbjct: 89  ESRIIEALRAGVSDVVPKAADYLDYLPEAVERALNEAQMRRVVAESERMRDRERHYRTIA 148

Query: 80  PRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI--DPNNHIGDLL 137
                  W     G    +S +     G  A   +G    D   +  +    +     + 
Sbjct: 149 EALPHLVWTCTPGGECDFLSRQWSDYTGMPAGAELGAGWFDAVHVDDLPMLRDAWRQTVG 208

Query: 138 KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN-RVDNDPRAL 196
           +  +++  +  L   +G  +Y    L    +   +      + FG               
Sbjct: 209 RGADSFIREVRLRRHDG--VYRWFCLRGTALREADGRI--AKWFGTCTDIQDQREASDER 264

Query: 197 GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKN----KVSSLTEYYAHKDD 252
            + L  + +     ++ + + ++    +  +   P    + +    + +           
Sbjct: 265 ERLLQSEQAARQAAEEANRAKDRFLAMLSHELRTPLTPVLASARMLERARDVPEPVRSAM 324

Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
            +      L       L +        L    +      L +   E F          + 
Sbjct: 325 KIIRRNIELEARLIDDLLDLTRVANGKLLLALETVDVHELIDAVLEIFRSDIQVKQLRVE 384

Query: 313 AYFDEGENLTPETVDKCPIPFF 334
                          +     +
Sbjct: 385 LDCTAQHRFVRADRARLQQMLW 406


>gi|297579232|ref|ZP_06941160.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae RC385]
 gi|297536826|gb|EFH75659.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae RC385]
          Length = 1178

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 89/379 (23%), Positives = 158/379 (41%), Gaps = 22/379 (5%)

Query: 442 INKRKMEIEVMQ-LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP---F 497
               K+  E  + L  +L+A    I I + +G ++ TN A  K++    E    +P    
Sbjct: 516 EQVAKLSTEQQRWLTELLDAIPSMIFISDEKGEVVLTNAAYRKIYHTCCEKGCVQPQPEC 575

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT 557
           +  +  +        + +    +         +             I   +     Y   
Sbjct: 576 SFLMLPDQHEAEFSIIIQAPKSNCSIDEHYFHVTRRA---------ISHPINQRKYYLTL 626

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
            +DI+E K+ +  L  + + A +    ++ FLA VSHE+RTP+ A++G  E++ ++    
Sbjct: 627 FNDITELKETEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGLMEILASR---- 682

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
           L +            S   +   VND+LD SKIE+ ++ L     +L + +   +   + 
Sbjct: 683 LKSSESQLLLTNAISSAERLKLHVNDILDFSKIEAQQLQLDIGLYNLADELGPLLRGFEA 742

Query: 678 YANEKRILIRTSFANN-IPRILADLRSVKQIALNILSNAIHFTPSGGQI-IISTTHTSNE 735
            A  K I     ++ N +     D     QI  N+LSNAI FT  G  +  I        
Sbjct: 743 SAKLKEIEFDVIWSPNSLLLANFDALRFNQIVTNLLSNAIKFTDQGRVVFKIDVAPE--- 799

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            + + V DTG GMT  +++    PF Q  ++   R  GTGLG+ +   +++   GK  + 
Sbjct: 800 MLTIVVDDTGCGMTQTQIDSLFVPFVQADSTITRRFGGTGLGMSIVANLIELMNGKIEVK 859

Query: 796 STPAKGTLIEIIFPLYDTS 814
           S   +GT I++  PL   +
Sbjct: 860 SEFEQGTQIQVNLPLVTQT 878


>gi|225871872|ref|YP_002753326.1| sensor histidine kinase [Acidobacterium capsulatum ATCC 51196]
 gi|225793438|gb|ACO33528.1| sensor histidine kinase [Acidobacterium capsulatum ATCC 51196]
          Length = 899

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 97/520 (18%), Positives = 195/520 (37%), Gaps = 47/520 (9%)

Query: 319 ENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYK--SVDDIEIAGGLSTLLDAPKLS 376
           + L     D+ P    V          P    L K        ++    L          
Sbjct: 392 DALMNAIADRLPHTLLVERVAVFLSDQPGHYRLAKAHGFPASLMQAESTLDLNFLDFDQP 451

Query: 377 DNN-----AIKPVMLYRSDRTCIAASA----RLHTIQWNRENSLAMTFIPFEKANQF--- 424
           D             L+ ++    + +          +        +        +     
Sbjct: 452 DAGSHIFFENTQAALHLTESEQRSVNLLDLNYYLPCRVQDRTIAVIGLGKTTGGDFLSSE 511

Query: 425 -----------PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
                           QN      ++ +I + +   E  +  +I+E+ + GI  ++ E  
Sbjct: 512 DMEMLESLASYIGIALQNARLYSSLEQKITEFERLKEFNE--NIVESINVGILAVDLEDR 569

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
           + S N  +  LF  P  + LR+P +    +   S+   Y T      +    +     + 
Sbjct: 570 VESWNTQMEVLFALPRREALRQPLSEVFPE---SLYREYQTVKEQPGVHHFYKFRLQTNA 626

Query: 534 KEEKLLSLRIII--KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
            E + +++ +     +   +    L + DI++  Q +++LS A+K+     S      A 
Sbjct: 627 GESRTVNVAVAPLVSRDFETVGRILLLEDITDRTQLESQLSQAEKL-----SSIGLLAAG 681

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           V+HE+ TPL  I  +++++  Q  G   + R     + I +      +IVN LL+ S+  
Sbjct: 682 VAHEVNTPLAVISSYTQMLSKQVRG---DDRLSPLLDKITQQTFRASEIVNGLLNFSRTG 738

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
           +      F    ++  + E ++LV+      +I +    + ++P I  +   ++Q+ LN+
Sbjct: 739 TS----EFRETDVNTLIRETLTLVEHQFKTAQIELVMDLSADLPTIRGNAGKLQQVFLNL 794

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-R 770
             NA      GGQ+ +ST    N  V + + DTG G++   ++K   PF    ++ +  +
Sbjct: 795 FLNAKDAMHGGGQLRVSTLV--NGHVTIAITDTGSGISPENMQKIYDPFFTTKSAPKEGQ 852

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             GTGLGL +   ++  + GK  + S    GT   + FP+
Sbjct: 853 RRGTGLGLAVTYGIIQEHAGKIRVESEVGCGTTFYLEFPV 892


>gi|302036587|ref|YP_003796909.1| histidine kinase [Candidatus Nitrospira defluvii]
 gi|300604651|emb|CBK40983.1| Histidine kinase [Candidatus Nitrospira defluvii]
          Length = 589

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 76/278 (27%), Positives = 138/278 (49%), Gaps = 13/278 (4%)

Query: 545 IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
             +L              E ++   +L  AK  A+  +  KS+FLA +SHEIRTP+ AII
Sbjct: 35  AARLRAERALQRVSK---ELQRRVEELQRAKDAADVANRAKSEFLASMSHEIRTPMNAII 91

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           G ++++      P       +Y     R+G  +L ++ND+LD+SK+ESG+++L      L
Sbjct: 92  GMADLLWETTLTP----EQRKYLRIFRRAGASLLSLINDILDLSKVESGRLDLDSIDFDL 147

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG 723
            E + +   ++ L ANEK + +    AN++P  ++ D   + QI LN+L NAI FT  G 
Sbjct: 148 SELIDKTSEMLALRANEKGLELVCHLANDVPCHLIGDPNRLYQILLNLLGNAIKFTEKGS 207

Query: 724 QIIIST---THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
            ++  T      +   +   + DTG+G+ + +++   + F Q  ++   +  GTGLGL +
Sbjct: 208 VVMSITNDPELRTPGAIRFSISDTGIGVPHDKIKTIFETFTQAHSTIARQYGGTGLGLSI 267

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIE--IIFPLYDTSHP 816
           ++ +     G+ ++ S   +G+     +   +     P
Sbjct: 268 SQQLAALMGGRIWVESRLGEGSTFHCLVRLGVQTAPPP 305


>gi|300113840|ref|YP_003760415.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Nitrosococcus watsonii C-113]
 gi|299539777|gb|ADJ28094.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Nitrosococcus watsonii C-113]
          Length = 1500

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 79/262 (30%), Positives = 127/262 (48%), Gaps = 10/262 (3%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           ++  +  + +L  A+  A + +  K +F A VSHE+RTPL  +IG  E++ N    P   
Sbjct: 249 MTVLEAREQELKKARDAALESARIKGEFAASVSHELRTPLNGVIGMLELLSNTELTPN-- 306

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
               EY      SG  +LD++ ++LD S+IESGK  L      L E + + I L+   A 
Sbjct: 307 --QREYVQVACGSGETLLDLIGNILDFSRIESGKFKLDSVDFYLQETLDDVIGLLAAQAQ 364

Query: 681 EKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE--- 736
            K + I    A N+P  +  D   ++QI +N++ NA+ FT  G ++ I       +    
Sbjct: 365 RKDLEIGYVVAENVPLFMRGDATRIRQILINLMGNAVKFTEQG-EVSIEVRLLEKKAKKL 423

Query: 737 -VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            +   VRDTG+G+    L +  + F Q  +S   +  GTGLGL + + +VD   G   + 
Sbjct: 424 VLHFEVRDTGIGIPLEFLARVFEAFSQADSSTTRKYGGTGLGLAICRQLVDLMGGDLGVE 483

Query: 796 STPAKGTLIEIIFPLYDTSHPH 817
           +   KG+L     PL +   P 
Sbjct: 484 NNLDKGSLFWFTVPLEEMIMPQ 505


>gi|296501720|ref|YP_003663420.1| two component system histidine kinase [Bacillus thuringiensis
           BMB171]
 gi|296322772|gb|ADH05700.1| two component system histidine kinase [Bacillus thuringiensis
           BMB171]
          Length = 896

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 78/341 (22%), Positives = 148/341 (43%), Gaps = 24/341 (7%)

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            +D++ +            +    +  +L      T E        + +   L++  ++L
Sbjct: 395 HQDLIHQTVDNLGLTIHSIMGRMRIQTLLHESQAMTEELQVQSEELQTQAEELQMQAEEL 454

Query: 549 PFSSCYSLTMHDISEWKQEKN-----KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
             ++    +  + +E K         +L        + S +KS+FLA +SHE+RTPL +I
Sbjct: 455 RTTNEQLESRTEEAEQKTADLQITKLELEEKASELLRSSKYKSEFLANMSHELRTPLNSI 514

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +  SE+++      L +    E A  I  SG  +L ++ND+LD+SK+E+GK+++ FE  +
Sbjct: 515 LLLSEMLRENHDNNLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDIIFEATN 573

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSG 722
           + +  +         A +K +      ++ IP +   D + ++QI  N+LSNA  FT  G
Sbjct: 574 ISDMAANMHQNFLHIAAQKNVEFTIEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKG 633

Query: 723 GQIIISTTHTS--------------NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
               +S    S               + + + V+DTG+G+   + +   + F Q   +  
Sbjct: 634 S---VSLHFDSIETTNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGATI 690

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            +  GTGLGL + K       G   + S   +G+   +  P
Sbjct: 691 RKYGGTGLGLSICKEFARLLGGWITLESNVGEGSTFTVYIP 731


>gi|228957374|ref|ZP_04119133.1| hypothetical protein bthur0005_8970 [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228802323|gb|EEM49181.1| hypothetical protein bthur0005_8970 [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 896

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 78/341 (22%), Positives = 148/341 (43%), Gaps = 24/341 (7%)

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            +D++ +            +    +  +L      T E        + +   L++  ++L
Sbjct: 395 HQDLIHQTVDNLGLTIHSIMGRMRIQTLLHESQAMTEELQVQSEELQTQAEELQMQAEEL 454

Query: 549 PFSSCYSLTMHDISEWKQEKN-----KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
             ++    +  + +E K         +L        + S +KS+FLA +SHE+RTPL +I
Sbjct: 455 RTTNEQLESRTEEAEQKTADLQITKLELEEKASELLRSSKYKSEFLANMSHELRTPLNSI 514

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +  SE+++      L +    E A  I  SG  +L ++ND+LD+SK+E+GK+++ FE  +
Sbjct: 515 LLLSEMLRENHDNNLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDIIFEATN 573

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSG 722
           + +  +         A +K +      ++ IP +   D + ++QI  N+LSNA  FT  G
Sbjct: 574 ISDMAANMHQNFLHIAAQKNVEFTIEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKG 633

Query: 723 GQIIISTTHTS--------------NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
               +S    S               + + + V+DTG+G+   + +   + F Q   +  
Sbjct: 634 S---VSLHFDSIETTNLSYDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGATI 690

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            +  GTGLGL + K       G   + S   +G+   +  P
Sbjct: 691 RKYGGTGLGLSICKEFARLLGGWITLESNVGEGSTFTVYIP 731


>gi|229126416|ref|ZP_04255431.1| hypothetical protein bcere0015_8730 [Bacillus cereus BDRD-Cer4]
 gi|228656996|gb|EEL12819.1| hypothetical protein bcere0015_8730 [Bacillus cereus BDRD-Cer4]
          Length = 883

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 78/341 (22%), Positives = 148/341 (43%), Gaps = 24/341 (7%)

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            +D++ +            +    +  +L      T E        + +   L++  ++L
Sbjct: 382 HQDLIHQTVDNLGLTIHSIMGRMRIQTLLHESQAMTEELQVQSEELQTQAEELQMQAEEL 441

Query: 549 PFSSCYSLTMHDISEWKQEKN-----KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
             ++    +  + +E K         +L        + S +KS+FLA +SHE+RTPL +I
Sbjct: 442 RTTNEQLESRTEEAEQKTADLQITKLELEEKASELLRSSKYKSEFLANMSHELRTPLNSI 501

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +  SE+++      L +    E A  I  SG  +L ++ND+LD+SK+E+GK+++ FE  +
Sbjct: 502 LLLSEMLRENHDNNLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDIIFEATN 560

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSG 722
           + +  +         A +K +      ++ IP +   D + ++QI  N+LSNA  FT  G
Sbjct: 561 ISDMAANMHQNFLHIAAQKNVEFTIEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKG 620

Query: 723 GQIIISTTHTS--------------NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
               +S    S               + + + V+DTG+G+   + +   + F Q   +  
Sbjct: 621 S---VSLHFDSIETTNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGATI 677

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            +  GTGLGL + K       G   + S   +G+   +  P
Sbjct: 678 RKYGGTGLGLSICKEFARLLGGWITLESNVGEGSTFTVYIP 718


>gi|229139286|ref|ZP_04267858.1| hypothetical protein bcere0013_23960 [Bacillus cereus BDRD-ST26]
 gi|228644142|gb|EEL00402.1| hypothetical protein bcere0013_23960 [Bacillus cereus BDRD-ST26]
          Length = 579

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 90/508 (17%), Positives = 175/508 (34%), Gaps = 41/508 (8%)

Query: 314 YFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                E      +   PI    +  +G+    N    ++T Y + + I     L  L   
Sbjct: 91  LLTRKEEELHTILQNMPIMVDALDYNGDFVLWNRECEIVTGYTAEEVIGNPNALRLLYPD 150

Query: 373 PKLSDNNAIKPVML----YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
                    K +         +      +  + TI W+                      
Sbjct: 151 HNYRHEIQKKFLTRGKNFRDWEMRLTCKNGEIKTIMWSN-----------ISEQFPVSGF 199

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
               +  +    +  + K+  +  +L  I +A  D   +   +G I+         F  P
Sbjct: 200 SYWAVGVDITHLKAIEEKLIQQTSELELIFQALPDLCFLTEDDGTIIDYKAGSPTKFYVP 259

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            E  + K F   L  +        + ++        +E     +   +           L
Sbjct: 260 AEAFMGKKFYEVLPTSVAQKFQEAIFQVKEKGTNAIVEYPLTINESIDFF---EARCLPL 316

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                  + + DI+E K+ +  L+ +  +A           A V+HE+R PLT I GF +
Sbjct: 317 LHDK-IMIIVRDITERKKTEELLNKSDTLA-----AIGQLAAGVAHEVRNPLTVIKGFIQ 370

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
                    +      +Y + +      +  I+ + L I+K +     +  E  ++ +  
Sbjct: 371 ------LFQINKEDQEKYFDLMLSEIERIEAILQEFLSIAKTD----EISTEKKNIYQIF 420

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
              +SL+   A    I +     +    I      +KQ+ +NIL N+I   P GG+I I 
Sbjct: 421 KNVVSLMNTKAIMTNIQVELYTNSKDIIIECSENQLKQVFINILQNSIEAMPDGGEISIH 480

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                 + +I+ V D G+G+    +++  +PF         + +GTG+GL L+  +++++
Sbjct: 481 IKEIGKDGIIISVIDKGIGIPEERIKRLGEPFY------STKEKGTGIGLMLSYKIIESH 534

Query: 789 MGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
            G   I S    GT + I  P   +  P
Sbjct: 535 QGNISIMSEVGVGTTVTIYLPKIQSKKP 562


>gi|229143715|ref|ZP_04272137.1| hypothetical protein bcere0012_8820 [Bacillus cereus BDRD-ST24]
 gi|228639771|gb|EEK96179.1| hypothetical protein bcere0012_8820 [Bacillus cereus BDRD-ST24]
          Length = 883

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 78/341 (22%), Positives = 148/341 (43%), Gaps = 24/341 (7%)

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            +D++ +            +    +  +L      T E        + +   L++  ++L
Sbjct: 382 HQDLIHQTVDNLGLTIHSIMGRMRIQTLLHESQAMTEELQVQSEELQTQAEELQMQAEEL 441

Query: 549 PFSSCYSLTMHDISEWKQEKN-----KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
             ++    +  + +E K         +L        + S +KS+FLA +SHE+RTPL +I
Sbjct: 442 RTTNEQLESRTEEAEQKTADLQITKLELEEKASELLRSSKYKSEFLANMSHELRTPLNSI 501

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +  SE+++      L +    E A  I  SG  +L ++ND+LD+SK+E+GK+++ FE  +
Sbjct: 502 LLLSEMLRENHDNNLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDIIFEATN 560

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSG 722
           + +  +         A +K +      ++ IP +   D + ++QI  N+LSNA  FT  G
Sbjct: 561 ISDMAANMHQNFLHIAAQKNVEFTIEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKG 620

Query: 723 GQIIISTTHTS--------------NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
               +S    S               + + + V+DTG+G+   + +   + F Q   +  
Sbjct: 621 S---VSLHFDSIETTNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGATI 677

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            +  GTGLGL + K       G   + S   +G+   +  P
Sbjct: 678 RKYGGTGLGLSICKEFARLLGGWITLESNVGEGSTFTVYIP 718


>gi|222147978|ref|YP_002548935.1| two component sensor kinase [Agrobacterium vitis S4]
 gi|221734966|gb|ACM35929.1| two component sensor kinase [Agrobacterium vitis S4]
          Length = 599

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 92/374 (24%), Positives = 174/374 (46%), Gaps = 26/374 (6%)

Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
              +  ++ +  + +     ++ F   + + L +PF   +              +   + 
Sbjct: 128 PGMVFTLDAQARVETVGGRDARDFLPFLRNPLGRPFIDQVHVTDRIAFVRAFDALRQGED 187

Query: 522 RQTLEKITLGST---------------------KEEKLLSLRIIIKKLPFSSC----YSL 556
              ++      T                      +  L+++ + +              +
Sbjct: 188 IGRVKLRLARPTNAHSEGSNGENLHGEITSDEAADGTLMAVGLDMAVRRDERGGIAGIFV 247

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            M D  E +Q   +L       +  +  KS FLA VSHE+RTPL AI+GFS+++    FG
Sbjct: 248 QMLDCREQQQMAQRLVKLDADLQTANEAKSRFLAAVSHELRTPLNAILGFSDILMGDYFG 307

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
            + + R+ EY   I +SG  +L +VN +LD+ +IE+G+  L  EP SL +A+ +  +++ 
Sbjct: 308 RMEDERHREYVRLIRQSGGHLLSVVNTMLDMCRIEAGRYELLVEPFSLSQAIHDCENMLA 367

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
           L A EK + + +    ++  + AD R+V+QI +N++ NAI FT  GG + +       ++
Sbjct: 368 LQAQEKGVKLTSRIGRDVSELTADPRAVRQILINLVGNAIKFTEPGGVVTVDAARF-GKD 426

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           +++ V DTG+G+    +    +PF Q+ +    + +G GLGL L K +V  + G F + S
Sbjct: 427 LVISVSDTGIGIAQDRILLLGQPFVQVDSDYNRKFDGVGLGLSLVKGLVALHGGTFLLTS 486

Query: 797 TPAKGTLIEIIFPL 810
              +GT++ I  P+
Sbjct: 487 REGEGTVVSITLPI 500


>gi|217960096|ref|YP_002338654.1| hypothetical protein BCAH187_A2703 [Bacillus cereus AH187]
 gi|222096161|ref|YP_002530218.1| sensor histidine kinase [Bacillus cereus Q1]
 gi|217066659|gb|ACJ80909.1| hypothetical protein BCAH187_A2703 [Bacillus cereus AH187]
 gi|221240219|gb|ACM12929.1| sensor histidine kinase [Bacillus cereus Q1]
          Length = 595

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 90/508 (17%), Positives = 175/508 (34%), Gaps = 41/508 (8%)

Query: 314 YFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                E      +   PI    +  +G+    N    ++T Y + + I     L  L   
Sbjct: 107 LLTRKEEELHTILQNMPIMVDALDYNGDFVLWNRECEIVTGYTAEEVIGNPNALRLLYPD 166

Query: 373 PKLSDNNAIKPVML----YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
                    K +         +      +  + TI W+                      
Sbjct: 167 HNYRHEIQKKFLTRGKNFRDWEMRLTCKNGEIKTIMWSN-----------ISEQFPVSGF 215

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
               +  +    +  + K+  +  +L  I +A  D   +   +G I+         F  P
Sbjct: 216 SYWAVGVDITHLKAIEEKLIQQTSELELIFQALPDLCFLTEDDGTIIDYKAGSPTKFYVP 275

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            E  + K F   L  +        + ++        +E     +   +           L
Sbjct: 276 AEAFMGKKFYEVLPTSVAQKFQEAIFQVKEKGTNAIVEYPLTINESIDFF---EARCLPL 332

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                  + + DI+E K+ +  L+ +  +A           A V+HE+R PLT I GF +
Sbjct: 333 LHDK-IMIIVRDITERKKTEELLNKSDTLA-----AIGQLAAGVAHEVRNPLTVIKGFIQ 386

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
                    +      +Y + +      +  I+ + L I+K +     +  E  ++ +  
Sbjct: 387 ------LFQINKEDQEKYFDLMLSEIERIEAILQEFLSIAKTD----EISTEKKNIYQIF 436

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
              +SL+   A    I +     +    I      +KQ+ +NIL N+I   P GG+I I 
Sbjct: 437 KNVVSLMNTKAIMTNIQVELYTNSKDIIIECSENQLKQVFINILQNSIEAMPDGGEISIH 496

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                 + +I+ V D G+G+    +++  +PF         + +GTG+GL L+  +++++
Sbjct: 497 IKEIGKDGIIISVIDKGIGIPEERIKRLGEPFY------STKEKGTGIGLMLSYKIIESH 550

Query: 789 MGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
            G   I S    GT + I  P   +  P
Sbjct: 551 QGNISIMSEVGVGTTVTIYLPKIQSKKP 578


>gi|119493069|ref|ZP_01623994.1| Multi-sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106]
 gi|119452814|gb|EAW33989.1| Multi-sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106]
          Length = 1727

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 131/759 (17%), Positives = 257/759 (33%), Gaps = 91/759 (11%)

Query: 86   TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTW-Y 144
             + ++  G L  ++    +  G    + IG  L +          + +   +        
Sbjct: 503  LFQLNTEGNLTFLNPIWTQQTGCLVSESIGTALIEYIHSDDRIQLSSLFSAILNGEIETI 562

Query: 145  GKTTLWPIEGTNL------YVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
             +        T+L      Y P+ L+   I +   +  G  G                  
Sbjct: 563  FQEVRLKNASTSLEENQSSYQPVILSGCAILNSEHQRVGITG----------------TL 606

Query: 199  RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
              +     + E       V  + Y+I    +     R+   +      +     +L   +
Sbjct: 607  NSNVPKVAITEDLTEKLKVIHQLYEIAINSNANFESRINQLLVMGCNRFRMDIGLLGRVR 666

Query: 259  YPLLTSEESSLPEQEDFHTINLNQYTKKQYFG--TLQNNSKESFEYLSHRNHPSLSAYFD 316
                    + L +   F     + ++ +Q F    L+ +     E + +       AY  
Sbjct: 667  ADRYEVISAYLSQDFPFGFTKGDTFSLEQTFEKEALRADDVVCIESIKNSPWKEHEAYTI 726

Query: 317  EGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
                    T    P+      +G L + +       +   ++ ++    L       +++
Sbjct: 727  RRLEAYIGT----PVKVEGRVYGTLSFMSRKARSSFQPIDLEILK----LMASYIGSEIA 778

Query: 377  DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
                     L R ++  +        ++   E          +    F   + +  I   
Sbjct: 779  RE--NSQQDLQRQNQYLLLMKQITQKVRSKLETQEIFQTTATQIGRVFG--VNRCSIYTY 834

Query: 437  DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP----VEDI 492
                      +      L    E+T +    +N        N  + +L          D+
Sbjct: 835  ISQPYP---HLACVAEYLEISYESTLNLEISVN-------YNPYIERLLSEDKAVVSPDV 884

Query: 493  LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE-EKLLSLRIIIKKLPFS 551
               P           +    +  I +    +    I L       +     +   +   S
Sbjct: 885  FADPLLESSAPMCRRMGLKSMLAIRTSYNSEPNGIIMLHQCDNLRQWTDEEVEFLEDVAS 944

Query: 552  SCYSLTMH------DISEWKQEKN---KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
                          ++   +Q  +    L  A+  AE  S  KS+FLA +SHEIRTP+ A
Sbjct: 945  QVGLTLFQAKLLEFEVKSRQQLADKNKALEEARLAAEIASRAKSEFLATMSHEIRTPMNA 1004

Query: 603  IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
            +IG + ++ +       NP   ++   I  SG+ +L I+ND+LD SKIESGK+ L  +P 
Sbjct: 1005 VIGMTGLLLDMNL----NPEQRDFVETIRTSGDALLTIINDILDFSKIESGKLELEHQPF 1060

Query: 663  SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPS 721
             L   + E++ L+   A+EK + +      N P ++  D+  ++Q+ +N+LSNA+ FT  
Sbjct: 1061 KLRTCIEESLDLLSARASEKGLELAYIVDPNTPEVMVGDVTRLRQVLVNLLSNAVKFTNQ 1120

Query: 722  GGQIIIST-------------THTSNEE-----------VILRVRDTGVGMTNYELEKAM 757
            G ++I+S              +     E           V   V+DTG+G+    + +  
Sbjct: 1121 G-EVIVSVTSSLIQDSAQSLISSEEKNESQPSISPPIYEVQFAVKDTGIGIPPDRMHRLF 1179

Query: 758  KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
            K F Q+  S   +  GTGLGL +++ + +   GK ++ S
Sbjct: 1180 KAFSQVDASTTRQYGGTGLGLAISQRLSEMMGGKMWVVS 1218



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 47/294 (15%), Positives = 98/294 (33%), Gaps = 45/294 (15%)

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK--PFTVFLEQNTPSV 508
             Q  SIL +  +G+   N +   +  +    ++ GY   +I  K   +   +       
Sbjct: 361 EEQSQSILSSDQNGLWDWNLKTQWVFYSPRWKQMLGYQNAEISSKIEEWFGRIHSKDLKA 420

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL----RIIIKKLPFSSCYSLTMHDISEW 564
           ++  L E  +  +   +        ++   + +    +II  +         T  DI+  
Sbjct: 421 VHATLKEHFAKKIDSCI-LEYRMRCQDGHYIWVLCQGQIIWAENGEPLRMIGTHLDITSR 479

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           K+      +       +++ K+        ++ T     + F   I  Q+ G L +    
Sbjct: 480 KKIPPLSQNNNSQQILKTNLKTILF-----QLNT--EGNLTFLNPIWTQQTGCLVSESIG 532

Query: 625 EYA-NYIDRSGN-LVLDIVNDLLDISKIESGKMNLHFEPVSLDEA---VSEAISLVQLYA 679
                YI       +  +       S I +G++   F+ V L  A   + E  S  Q   
Sbjct: 533 TALIEYIHSDDRIQLSSL------FSAILNGEIETIFQEVRLKNASTSLEENQSSYQPVI 586

Query: 680 ---------NEKRILIRTSFANNIPRILADLR---------SVKQIALNILSNA 715
                      +R+ I  +  +N+P++               + +IA+N  SNA
Sbjct: 587 LSGCAILNSEHQRVGITGTLNSNVPKVAITEDLTEKLKVIHQLYEIAIN--SNA 638


>gi|30019163|ref|NP_830794.1| two component system histidine kinase [Bacillus cereus ATCC 14579]
 gi|29894706|gb|AAP07995.1| Two component system histidine kinase [Bacillus cereus ATCC 14579]
          Length = 896

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 78/341 (22%), Positives = 148/341 (43%), Gaps = 24/341 (7%)

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            +D++ +            +    +  +L      T E        + +   L++  ++L
Sbjct: 395 HQDLIHQTVDNLGLTIHSIMGRMRIQTLLHESQAMTEELQVQSEELQTQAEELQMQAEEL 454

Query: 549 PFSSCYSLTMHDISEWKQEKN-----KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
             ++    +  + +E K         +L        + S +KS+FLA +SHE+RTPL +I
Sbjct: 455 RTTNEQLESRTEEAEQKTADLQITKLELEEKASELLRSSKYKSEFLANMSHELRTPLNSI 514

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +  SE+++      L +    E A  I  SG  +L ++ND+LD+SK+E+GK+++ FE  +
Sbjct: 515 LLLSEMLRENHDNNLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDIIFEATN 573

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSG 722
           + +  +         A +K +      ++ IP +   D + ++QI  N+LSNA  FT  G
Sbjct: 574 ISDMAANMHQNFLHIAAQKNVEFTIEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKG 633

Query: 723 GQIIISTTHTS--------------NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
               +S    S               + + + V+DTG+G+   + +   + F Q   +  
Sbjct: 634 S---VSLHFDSIETTNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGATI 690

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            +  GTGLGL + K       G   + S   +G+   +  P
Sbjct: 691 RKYGGTGLGLSICKEFARLLGGWITLESNVGEGSTFTVYIP 731


>gi|329896809|ref|ZP_08271725.1| two-component system sensory histidine kinase [gamma
           proteobacterium IMCC3088]
 gi|328921564|gb|EGG28944.1| two-component system sensory histidine kinase [gamma
           proteobacterium IMCC3088]
          Length = 508

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 89/266 (33%), Positives = 132/266 (49%), Gaps = 5/266 (1%)

Query: 558 MHDISE-WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ--R 614
            +D+SE       ++  AK+ A+  ++ KS FLA VSHE+RTPL AIIG+SE+I+ +   
Sbjct: 244 FNDMSEKLANAIGEVQMAKEQADSANAAKSTFLANVSHELRTPLNAIIGYSEMIQEEVND 303

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
              +   +  E    I  SG  +L ++ND+LD++KIE+GKM +H E       +      
Sbjct: 304 GEAINKDQLQEDLTKIVFSGRQLLTLINDVLDLAKIETGKMTIHPESFDPIATLHTVADS 363

Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS- 733
           +    N +   +       +P I  D    +QI  N+LSNA  FT +G  I I    T  
Sbjct: 364 MAPLLNTQGNEMCWDIQGPLPCIHTDATKFRQIVTNLLSNANKFTEAGS-ITIRAGITDS 422

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
            E++ + VRDTG+GMT+ +L +  + F Q   S   R  GTGLGL L +       G   
Sbjct: 423 QEQIWIEVRDTGIGMTDQQLGRIFEAFEQAERSTSSRYGGTGLGLSLCQEFAHMLGGDIT 482

Query: 794 IFSTPAKGTLIEIIFPLYDTSHPHDC 819
             STP  G+   +  P+     P D 
Sbjct: 483 ASSTPNVGSSFIVTLPVNLELDPEDA 508


>gi|300868141|ref|ZP_07112775.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
 gi|300333876|emb|CBN57955.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
          Length = 1055

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 89/406 (21%), Positives = 178/406 (43%), Gaps = 23/406 (5%)

Query: 421 ANQFPENMPQNGIEPEDVDTRINKR--KMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
           A Q  E+        E+++ R+N+R   +      L         G   +N E   L+  
Sbjct: 411 AQQLQESFTALENTNEELEQRVNERTAALRESEALLNQTQRIAKVGGWEMNLETQELTWT 470

Query: 479 RAVSKLFGYPVE-DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
             V  ++   ++  +  +    F    +  ++     + ++      +E   + + K ++
Sbjct: 471 EEVYHIYEVDLDFQLTPESVMAFYPSESIEILEKASLQAMANKEPFDVELQFVTAIKNQR 530

Query: 538 LLSLRIIIKKLPFSSCYS-LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
            + +                T  DI++ K  +  L  AK  A+  +  KS+FLA +SHE+
Sbjct: 531 WVHVLGQPHYKNDIPFKLKGTFQDITDRKNAEVTLQEAKLAADAANQAKSEFLANMSHEL 590

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTPL  I+G++++++         P+ +   N I + G+ +L ++ND+LD+SKIE+ KM 
Sbjct: 591 RTPLNGILGYAQILQRD---SSLTPKQLAEINIIYKCGSHLLTLINDILDLSKIEARKME 647

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNA 715
           L+         +     + ++ A +K I    +F   +P ++ AD + ++Q+ +N+L NA
Sbjct: 648 LYPSSFYFLGFLQVVSEICRIKAEQKGISFICNFDAALPYVVEADEKRLRQVLVNLLGNA 707

Query: 716 IHFTPSGGQIIISTTHTSN-------------EEVILRVRDTGVGMTNYELEKAMKPFGQ 762
           + FT +G  +                        +  ++ DTGVGMT+ +++K  +PF Q
Sbjct: 708 VKFTDAGA-VTFKVAVVDLISVESTTSTLTNINTIRFQIEDTGVGMTSEQMQKIFQPFEQ 766

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           +    +   EGTGLGL ++  +++       + S    G+      
Sbjct: 767 V-GDTRRMVEGTGLGLAISLKIIEMMGSSIKVASKSQAGSQFWFDL 811


>gi|226312404|ref|YP_002772298.1| sporulation kinase [Brevibacillus brevis NBRC 100599]
 gi|226095352|dbj|BAH43794.1| sporulation kinase [Brevibacillus brevis NBRC 100599]
          Length = 606

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 105/635 (16%), Positives = 222/635 (34%), Gaps = 49/635 (7%)

Query: 190 DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL-RMKNKVSSLTEYYA 248
             D R     + +    L E      S+   +  I    S    +     +      Y  
Sbjct: 7   RVDLRQEQFNMKELLQSLVETTTDAISIRDMQGHILFVNSAFEKIYGWTYQDLLNDPYCL 66

Query: 249 HKDDVLKTEKY---PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
             ++++   K     +    ++    +      N            +++           
Sbjct: 67  VPEELIDETKEIFHEVKFEGKNITGYETVRQRKNGEIVHVGLTASPIRDTEGTIVGTSVI 126

Query: 306 RNHPSLSAYFDEG----ENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDI 360
               +     +E     E      V+        +    N  + +PS      Y   + +
Sbjct: 127 ARDITDRKMAEEALVNSEAKYRILVENTSDVICQHDVHMNNLFVSPSIKHHLGYTQDEYL 186

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
                   +      +  +    + +       +    RL   +    + +         
Sbjct: 187 -QTNSFDLIHPDDVKTVKDLRSLISM---HPQNVQMEIRL---RHKNGSWVYWESRCVPI 239

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
            ++  E      +     + + ++  +     Q   I E T+D I+++++ G +L ++ +
Sbjct: 240 MSENKEIDSFLFVSRNITERKHSEEALRKSEEQYRFIAEHTADFISVMDKYGHVLYSSPS 299

Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
             K  G        +     +     +++    + ++  D+  T         + EK + 
Sbjct: 300 HLKKLGTS------QIIFENIHPEDAALVCERFSTMIEFDIPVTC--EYRYKLENEKWIY 351

Query: 541 LRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
           L         S      +     D++E KQ +  L   +K++        +  A ++HEI
Sbjct: 352 LESRGMPFFSSDGGNQYFINITRDLTERKQNEELLRRTEKLSV-----IGELAASIAHEI 406

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           R PLTA+ GF + ++    G         Y + +    + +  IV++LL ++K +     
Sbjct: 407 RNPLTALKGFIQYLRPTLSGGAT------YTDIMLSELDRINFIVSELLVLAKPQ----T 456

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716
           L+ + + L   +   +  ++  AN     I T F++    I  +   VKQ+ +N+L N++
Sbjct: 457 LNVKRILLHPLIESVVKFLESEANRNNTSINTIFSDIPIAIKGEENQVKQVFINLLKNSL 516

Query: 717 HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
               S G I I TT   N +V +R  D G G++   L +  +PF         + +GTGL
Sbjct: 517 DAITSNGTISIETTCLPNNQVRIRFTDNGCGISQELLPRLGEPFYTT------KEKGTGL 570

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
           GL ++  ++  + G   I S   KGT +EI+FP+ 
Sbjct: 571 GLLVSNKIMKDHQGTINISSEVNKGTTVEIMFPIS 605



 Score = 43.9 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 22/233 (9%), Positives = 65/233 (27%), Gaps = 11/233 (4%)

Query: 96  KEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ-NTWYGKTTLWPIEG 154
             +S  +   +G    + +     D+     +     +  L+         +  L    G
Sbjct: 168 LFVSPSIKHHLGYTQDEYLQTNSFDLIHPDDVKTVKDLRSLISMHPQNVQMEIRLRHKNG 227

Query: 155 TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214
           +  +V  +   +PI S N+E   F    +              ++ ++++  + E     
Sbjct: 228 S--WVYWESRCVPIMSENKEIDSF--LFVSRNITERKHSEEALRKSEEQYRFIAEHTADF 283

Query: 215 SSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQED 274
            SV  +   +             +++     +     +          T  E  +P   +
Sbjct: 284 ISVMDKYGHVLYSSPSHLKKLGTSQIIFENIH----PEDAALVCERFSTMIEFDIPVTCE 339

Query: 275 FHTINLNQYTKKQYFG--TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
           +     N+             ++   +  +++     +     +E    T + 
Sbjct: 340 YRYKLENEKWIYLESRGMPFFSSDGGNQYFINITRDLTERKQNEELLRRTEKL 392


>gi|260223179|emb|CBA33482.1| hypothetical protein Csp_B19280 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 450

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 73/448 (16%), Positives = 173/448 (38%), Gaps = 18/448 (4%)

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI--EP 435
            +A   +         +    R+          +   + P    ++   N+         
Sbjct: 15  ADATGDLTFSSWLGVPMQIRGRM------GGVLVVQGYTPDVIYDEDDVNILGFFANHVS 68

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
             ++      ++     +  S++E    G  ++ ++G ++  N ++ ++ G+  + ++  
Sbjct: 69  AAIERYQAIEELRKSEARYRSVIENVGVG-VVVVQDGRMVFVNPSMERIVGHSTQALMAM 127

Query: 496 PFTVFLEQNTPSVMNH-YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554
           PFT  +  +    +   +   +    + +      +    E + L L  ++ +       
Sbjct: 128 PFTGTIHPDDVPAVVERHQRRLRGEPVEEMYSFRIITDKGEVRTLDLSAVLLQWGHRDAT 187

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
            L + D +   + +     A +   + +  KS F+   SHE RTPL  I G  + +    
Sbjct: 188 LLFVVDATARVEAEQNQKRALQQQIELNDLKSRFITMASHEFRTPLATIHGSVD-LLMHY 246

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
              +   +       ID +   +  ++ ++L I + ++G++    +P  +       +  
Sbjct: 247 DDRMPVDKKRLTLLKIDDAVERMTHMLENVLVIGRSDAGRLQFKPQPSQVAVFCKSLVDE 306

Query: 675 VQLYANE--KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
           ++    E  +RI +      +    L D   ++ I  N+LSNAI ++P GGQ+ +     
Sbjct: 307 LRSAMAEPFRRIQMAMDLPRDTDAYLVDEVLIRNIVGNLLSNAIKYSPHGGQVTLRVRPR 366

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
              E+++ V D G+G+   +  +  + F +   S      GTGLGL + +  V  + G  
Sbjct: 367 P-GELVITVSDQGIGIPLADQPQLFESFHRA--SNVGNISGTGLGLAIVRDAVQCHGGSI 423

Query: 793 YIFSTPAKGTLIEIIFPLYDTSHPHDCI 820
            + STP +G+   ++      + P + +
Sbjct: 424 SLQSTPGEGSTFTVVL--TAPAAPKESV 449



 Score = 46.6 bits (109), Expect = 0.018,   Method: Composition-based stats.
 Identities = 14/134 (10%), Positives = 42/134 (31%), Gaps = 4/134 (2%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151
            G +  ++  + + +G+    ++ M          +           R        +   
Sbjct: 103 DGRMVFVNPSMERIVGHSTQALMAMPFTGTIHPDDVPAVVERHQRRLRGEPVEEMYSFRI 162

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
           I        +DL+A+ +   +R+ +       V       +     KR  ++   L+++K
Sbjct: 163 ITDKGEVRTLDLSAVLLQWGHRDAT----LLFVVDATARVEAEQNQKRALQQQIELNDLK 218

Query: 212 KGHSSVEKEKYDIF 225
               ++   ++   
Sbjct: 219 SRFITMASHEFRTP 232



 Score = 42.3 bits (98), Expect = 0.37,   Method: Composition-based stats.
 Identities = 12/147 (8%), Positives = 33/147 (22%), Gaps = 8/147 (5%)

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
                     + E      ++   +   V   G + + NPS   +  + +   + +    
Sbjct: 72  ERYQAIEELRKSEARYRSVIENVGVGVVVVQDGRMVFVNPSMERIVGHSTQALMAMP--- 128

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
                     D+         R  R           I  ++     +         Q+  
Sbjct: 129 ---FTGTIHPDDVPAVVERHQRRLRGEPVEEMYSFRIITDKGEVRTLDLSAVLL--QWGH 183

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQ 453
                    +       ++  +  + Q
Sbjct: 184 RDATLLFVVDATARVEAEQNQKRALQQ 210


>gi|188588135|ref|YP_001921036.1| sensory transduction histidine kinase [Clostridium botulinum E3
           str. Alaska E43]
 gi|188498416|gb|ACD51552.1| sensory transduction histidine kinase [Clostridium botulinum E3
           str. Alaska E43]
          Length = 515

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 105/496 (21%), Positives = 196/496 (39%), Gaps = 29/496 (5%)

Query: 320 NLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
           +     +D  P   ++        Y N  FL   K    D I     ++   D    S+ 
Sbjct: 13  DDLERILDNFPYLIWIKDQKNRYRYVNKYFLTTFKKNERDIIGKTEVINCNNDYVLGSEE 72

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
           N I  V                       EN   ++    E       N          +
Sbjct: 73  NLITEVEF--------------------NENKKYLSVYKTELPTGTKYNWMLAVARDVTL 112

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
             +   ++++++  +L S LE ++D   I+         +    K FG+  E+       
Sbjct: 113 LKKEMTKRLKVQK-RLESFLEISTDLWGILQSNYRFKDVSDNCIKTFGWTSEEFKNLNAV 171

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM 558
                +    +   +  + + D +  L    L   K  K   +      L       LT 
Sbjct: 172 NLTHPDDRERILKKMDFLFNKDKKTFLLNRFLC--KNGKYKLIEWTWCCLEEGKTVLLTG 229

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            DI+E KQ   +     + A    S K++F A VSHE +TPL  I+   +++ ++    +
Sbjct: 230 RDITEKKQL-EEEKRRLEEAIAIESLKTEFFATVSHEFKTPLNIILTTVQLLADKFKNDV 288

Query: 619 GNPRYI---EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
                    +Y N I ++   +L +VN+L+DI++I+ G   L  E  ++   +   +  V
Sbjct: 289 LTEEVKINLKYINGIKQNSYRLLKLVNNLIDITQIDGGIYKLSLENCNIVSVIENIVISV 348

Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-SN 734
             Y NEK   I          +  D   +++I LN+LSNA+ +T  GG I ++ +   +N
Sbjct: 349 SKYINEKNRNIIFDTTKEEIILAIDCDKIERIILNLLSNAVKYTNRGGNIYVNLSTDINN 408

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
             VI++++D G+G+   +++   + F Q  +    R EGTG+GL + +++++ + GK  +
Sbjct: 409 NRVIVKIKDDGIGIPEKDMDSIFRRFKQSGDVFTRRCEGTGIGLSIVRSLIEMHGGKIKV 468

Query: 795 FSTPAKGTLIEIIFPL 810
            +   KG       P+
Sbjct: 469 NNEIKKGAEFIFFLPI 484


>gi|170708012|ref|ZP_02898461.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           A0389]
 gi|170127172|gb|EDS96050.1| sensor histidine kinase/response regulator [Bacillus anthracis str.
           A0389]
          Length = 896

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 79/338 (23%), Positives = 148/338 (43%), Gaps = 18/338 (5%)

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            +D++++            +    +  +L      T E        + +   L++  ++L
Sbjct: 395 HQDLIQQTVDNLGLTIHSIMGRMRIQTLLHESQAMTEELQVQSEELQTQAEELQMQTEEL 454

Query: 549 PFSSCYSLTMHDISEWKQEKN-----KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
             ++    +  + +E K         +L        + S +KS+FLA +SHE+RTPL +I
Sbjct: 455 RTTNEQLESRTEEAEQKTADLQITKLELEEKASELLRSSKYKSEFLANMSHELRTPLNSI 514

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +  SE++K      L +    E A  I  SG  +L ++ND+LD+SK+E+GK+++ FE  +
Sbjct: 515 LLLSEMLKENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIFEATN 573

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSG 722
           + +  +         A +K +      ++ IP +   D + ++QI  N+LSNA  FT  G
Sbjct: 574 ISDMAASMHQNFLHIAAQKNVEFTVEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKG 633

Query: 723 GQ------IIISTTHTS-----NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
                   I  S           + + + V+DTG+G+   + +   + F Q   +   + 
Sbjct: 634 SVSLHFDSIETSNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGATIRKY 693

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            GTGLGL + K       G   + S   +G+   +  P
Sbjct: 694 GGTGLGLSICKEFARLLGGWITLESHVGEGSTFTVYIP 731


>gi|260463647|ref|ZP_05811845.1| PAS/PAC sensor signal transduction histidine kinase [Mesorhizobium
           opportunistum WSM2075]
 gi|259030501|gb|EEW31779.1| PAS/PAC sensor signal transduction histidine kinase [Mesorhizobium
           opportunistum WSM2075]
          Length = 550

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 79/548 (14%), Positives = 177/548 (32%), Gaps = 33/548 (6%)

Query: 277 TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP--IPFF 334
            +  +Q             S          +             L     ++ P  +   
Sbjct: 7   GVAGSQIQGLHVSKKAPVPSGRETAAAVLSDGKREEQRGAAEHELLALMFEQAPGFMTLL 66

Query: 335 VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394
                     N ++  L             G       P+L      + +          
Sbjct: 67  SEPGHVFQLTNAAYQRLIGQ------RQVIGKPVREALPELEGQRFFELLDQVSETGEPY 120

Query: 395 AASARLHTIQWNRENSL---AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV 451
                   ++  +E       + F+                   +  D       +++  
Sbjct: 121 VGRGVKVVLRNPKEGITEQRILDFVYQPIKADDGRITAIFVQGTDVSDLSFANAALQLRE 180

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
             L SIL    D + +I+ +  I S + A   LFGY   +++    ++ +        + 
Sbjct: 181 DHLRSILATVPDAMVVIDEQARIQSFSAAAEALFGYKSSEVIGANVSMLMPSPYREEHDG 240

Query: 512 YLTEILSLDLRQT--LEKITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQE 567
           YL   L+   R+   L +   G  K+     + + + ++   +   ++    D++E  + 
Sbjct: 241 YLQRYLTTGERRIIGLGRTVTGMRKDGSTFPMELAVGEMHPGTGRFFTGFCRDLTERHKS 300

Query: 568 KNKLSHAKKIAEKESS--HKSDFLARVSHEIRTPLTAIIGFSEVIKN--QRFGPLGNPRY 623
           + ++   ++     +      +  + ++HEI  PLTAI  + +  +   ++         
Sbjct: 301 EARILEQQQELLHMARFTALGEMASTLAHEINQPLTAITNYLKGSRRLLEKSKDDNAEML 360

Query: 624 IEYANYIDRSGNLVLDIVNDLLDI-SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
            E             D++  L D  ++ ES       +   L   + EA SL  + A E 
Sbjct: 361 REAVERAAEQALRAGDVIRHLRDFVARGES-----ERQVERLATIIEEASSLALVGAREA 415

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP--SGGQIIISTTHTSNEEVILR 740
            + +          +L D   ++Q+ LN++ NA+         ++ + T   ++    + 
Sbjct: 416 DVRVSYELDPAAELVLTDRIQIQQVLLNLMRNAVEAMQGAPRRELRVVTRTRADGMAEVS 475

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V+DTG G+      +  +PF           +G G+GL + + +V+++ G  +  + P  
Sbjct: 476 VKDTGPGLAPEISAQLFQPFITTKK------QGMGVGLSICRTIVESHGGHIWAEAMPGG 529

Query: 801 GTLIEIIF 808
           GT      
Sbjct: 530 GTAFRFTL 537



 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 67/243 (27%), Gaps = 14/243 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD-ILHIDPNNHIGDLL---KRQNTWY 144
           ID    ++  S       G  + ++IG  +  +       + + ++   L   +R+    
Sbjct: 197 IDEQARIQSFSAAAEALFGYKSSEVIGANVSMLMPSPYREEHDGYLQRYLTTGERRIIGL 256

Query: 145 GKTTL-WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
           G+T      +G+    P++LA   ++     F  F GF         +   A      ++
Sbjct: 257 GRTVTGMRKDGSTF--PMELAVGEMHPGTGRF--FTGF--CRDLTERHKSEARILEQQQE 310

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
             H+          E           P   +    K S      +  D+     +     
Sbjct: 311 LLHMARFTA---LGEMASTLAHEINQPLTAITNYLKGSRRLLEKSKDDNAEMLREAVERA 367

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
           +E++        H  +     + +          E    L+               +   
Sbjct: 368 AEQALRAGDVIRHLRDFVARGESERQVERLATIIEEASSLALVGAREADVRVSYELDPAA 427

Query: 324 ETV 326
           E V
Sbjct: 428 ELV 430


>gi|254718142|ref|ZP_05179953.1| histidine kinase [Brucella sp. 83/13]
 gi|306837656|ref|ZP_07470525.1| histidine kinase [Brucella sp. NF 2653]
 gi|306407214|gb|EFM63424.1| histidine kinase [Brucella sp. NF 2653]
          Length = 859

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 130/724 (17%), Positives = 260/724 (35%), Gaps = 49/724 (6%)

Query: 110 AFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN--TWYGKTTLWPIEGTNLYVPIDLAALP 167
              ++G                  G  L+ Q+        +    +     + ++     
Sbjct: 150 RADVVGQLPDACGAPQDRPAFLAFGRWLRPQSVTALERAISTLREQARAFDLTVETVNGS 209

Query: 168 IYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ 227
           +   +   SG  GF +    +     +A    L+ +   L +  +    +          
Sbjct: 210 LLDVHGRTSG--GFAVA-CFQSLQGVQAERASLEAQNRELADRIELMRRLLDRIEQPAWL 266

Query: 228 QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287
           +     +   N   +           + +E   L  ++     E+  F    + +     
Sbjct: 267 RDGNGRIEWVNLAYA-HAVDMANASQVISEGRELFGAQARQRLERGRFAEPVVQEQLTAV 325

Query: 288 YFGTLQ--------NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG 339
             G  +          S             ++            ET+D+      ++   
Sbjct: 326 VHGDRRVFDVIDVSAESGSVGLGFDLTEVQAVRDELSRTLKSHAETLDQLSTAVAIFDPE 385

Query: 340 -NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398
             L + N +F+ L     V  +E     + + D  +       +P      D    A  A
Sbjct: 386 MKLQFFNQAFVKLWGL-DVAWLETRPSNTLIFDRLRAEGKLPEQPEWRKWKDSLLSAYRA 444

Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI- 457
                    E    M  +P  +  +   N    G      +    K ++E     L  + 
Sbjct: 445 V--------EPEEHMWHLPDTRTMRVVANPHPQGGVTWFFENMTEKFELEGRYNTLIKVQ 496

Query: 458 ---LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYL 513
              L+  ++ +A+   +G +  +N + + L+  P E +      ++  +       +   
Sbjct: 497 GETLDHLAEAVAVFGSDGRLRLSNPSFAALWSLPSEMVREGTHISIIAKLCNQRGGDGLW 556

Query: 514 TEILSLDLRQTLEKITL---GSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570
            + +S       ++          +  +LS  ++           LT  D+++  + +  
Sbjct: 557 EDFVSTVTGFLDQRDGRMGQVELSDGAILSFAVVPLP---KGQTMLTFIDVTDTVRVERA 613

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           L    +  E     K+DF+  VS+E+R+PLT IIGF+E+++   FG L N R +EY ++I
Sbjct: 614 LKEKNEALELADQIKNDFVQHVSYELRSPLTNIIGFTELLQTPAFGSL-NERQLEYLDHI 672

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
             S +++L IVND+LD++ +++G M L    VS+ EA+S A S V     +  I +    
Sbjct: 673 STSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEAISAAASRVSERLRDHNIGLDVDI 732

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
           A+++    AD   V+Q+  N+LSNA+++ P G  I++        +V+  V D G GM +
Sbjct: 733 ADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVLQVA-RDGADVVFAVHDDGHGMPS 791

Query: 751 YELEKAMKPFGQIPN-----SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
             L+   K F   PN        +          + K+ V+ + G+  I +   +GT + 
Sbjct: 792 EVLDTVFKRFQSYPNGGRRRGAGLGLA-------IVKSFVELHGGRVEIDTGEERGTTVI 844

Query: 806 IIFP 809
             FP
Sbjct: 845 CRFP 848


>gi|228951472|ref|ZP_04113578.1| hypothetical protein bthur0006_8910 [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228808179|gb|EEM54692.1| hypothetical protein bthur0006_8910 [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 883

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 78/338 (23%), Positives = 149/338 (44%), Gaps = 18/338 (5%)

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            +D++++            +    +  +L      T E        + +   L++  ++L
Sbjct: 382 HQDLIQQTVDNLGLTIHSIMGRMRIQTLLHESQAMTEELQVQSEELQTQAEELQMQAEEL 441

Query: 549 PFSSCYSLTMHDISEWKQEK-----NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
             ++    +  + +E K        ++L        + S +KS+FLA +SHE+RTPL +I
Sbjct: 442 RTTNEQLESRTEEAEQKTADLQITKSELEEKASELLRSSKYKSEFLANMSHELRTPLNSI 501

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +  SE+++      L +    E A  I  SG  +L ++ND+LD+SK+E+GK+++ FE  +
Sbjct: 502 LLLSEMLRENHNNNLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDIIFEATN 560

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSG 722
           + +  +         A +K +      ++ IP +   D + ++QI  N+LSNA  FT  G
Sbjct: 561 ISDMAANMHQNFLHIAAQKNVEFTIEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKG 620

Query: 723 GQ------IIISTTHTS-----NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
                   I  S           + + + V+DTG+G+   + +   + F Q   +   + 
Sbjct: 621 SVSLHFDSIETSNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGATIRKY 680

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            GTGLGL + K       G   + S   +G+   +  P
Sbjct: 681 GGTGLGLSICKEFARLLGGWITLESNVGEGSTFTVYIP 718


>gi|153839829|ref|ZP_01992496.1| signal transduction histidine-protein kinase BarA [Vibrio
           parahaemolyticus AQ3810]
 gi|149746646|gb|EDM57634.1| signal transduction histidine-protein kinase BarA [Vibrio
           parahaemolyticus AQ3810]
          Length = 932

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 82/252 (32%), Positives = 131/252 (51%), Gaps = 10/252 (3%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  AKK A++ +  KS+FLA +SHE+RTPL  +IGF+  +   +          +Y   
Sbjct: 276 ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLSN----SQTDYLQT 331

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I++S N +L+I+ND+LD SK+E+GK+ L   P    E++ E I+L    A+EK + I   
Sbjct: 332 IEKSANNLLNIINDILDFSKLEAGKLALENIPFDFRESLEEVINLQATSAHEKGLEITLK 391

Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT----SNEEVILRVRDT 744
               IP  ++ D   ++QI  N++ N+I FT  G  I +S         + E+   VRDT
Sbjct: 392 VDPKIPPGLVGDPLRIQQILTNLVGNSIKFTERG-NIDVSVEMRSQAGDSVELQFMVRDT 450

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G++  +  +  + F Q   S   R  GTGLGL + + +V    G+  + S   +G+  
Sbjct: 451 GIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTF 510

Query: 805 EIIFPLYDTSHP 816
                L  T  P
Sbjct: 511 WFTLRLNSTEMP 522


>gi|269966413|ref|ZP_06180498.1| hypothetical protein VMC_19280 [Vibrio alginolyticus 40B]
 gi|269829000|gb|EEZ83249.1| hypothetical protein VMC_19280 [Vibrio alginolyticus 40B]
          Length = 726

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 83/258 (32%), Positives = 131/258 (50%), Gaps = 11/258 (4%)

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
               + E +++  ++ HAK+ A   +  KS FLA +SHEIRTPL  I+G +E++      
Sbjct: 351 VNRVVEEMQRQTEEILHAKESAVSANRAKSVFLANMSHEIRTPLNGIMGMTEILSQSELS 410

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
                   E  + ID S   +L ++ND+LD+SKIESG++ L      + E V +++ L Q
Sbjct: 411 S----HQQEVVDDIDSSSQTLLTLLNDILDLSKIESGRLELSLVEADIREVVYQSMILFQ 466

Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS-- 733
             A  K++ +  + A NIP R++ D   VKQ+  N++SNA+ FT SG  + +  ++    
Sbjct: 467 SKATSKQLKLGINLAENIPIRVMVDDHRVKQVVTNLVSNAVKFTESG-HVCVDVSYEELP 525

Query: 734 ---NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
                 +  +V DTG+G+   +L    +PF Q       +  GTGLGL +   +V    G
Sbjct: 526 EKERGVLTFKVEDTGIGIDQDKLTTIFEPFTQEDEGVSRQFGGTGLGLAICCQLVSMMGG 585

Query: 791 KFYIFSTPAKGTLIEIIF 808
           K    ST   GT  E   
Sbjct: 586 KLVATSTKGVGTCFEFSI 603


>gi|153828872|ref|ZP_01981539.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae 623-39]
 gi|148875668|gb|EDL73803.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae 623-39]
          Length = 1146

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 90/382 (23%), Positives = 160/382 (41%), Gaps = 24/382 (6%)

Query: 441 RINKRKMEIEVMQLC---SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP- 496
           R +++  ++   QL     +L+A    I I + +G ++ TN A  K++    E    +P 
Sbjct: 481 RSSEQVAKLSTEQLRWLTELLDAIPSMIFISDAKGEVVLTNAAYRKIYHTCCEKGCVQPQ 540

Query: 497 --FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554
              +     +        + +    +         +             I   +     Y
Sbjct: 541 PECSFLALPDQHEAEFSIIIQAPKSNCSIGEHYFHVTRRA---------ISHPINQRKYY 591

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
               +DI+E K+ +  L  + + A +    ++ FLA VSHE+RTP+ A++G  E++ ++ 
Sbjct: 592 LTLFNDITELKETEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGLMEILASR- 650

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
              L +            S   +   VND+LD SKIE+ ++ L     +L + +   +  
Sbjct: 651 ---LKSSESQLLLTNAISSAERLKLHVNDILDFSKIEAQQLQLDIGLYNLADELGPLLRG 707

Query: 675 VQLYANEKRILIRTSFANN-IPRILADLRSVKQIALNILSNAIHFTPSGGQI-IISTTHT 732
            +  A  K I     ++ N +     D     QI  N+LSNAI FT  G  +  I     
Sbjct: 708 FEASAQLKEIEFDVIWSPNSLLLANFDALRFNQIVTNLLSNAIKFTDQGRVVFKIDVAPE 767

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
               + + V DTG GMT  ++E    PF Q  ++   R  GTGLG+ +   +++   GK 
Sbjct: 768 ---MLTIVVEDTGCGMTQTQIESLFVPFAQADSTITRRFGGTGLGMSIVANLIELMNGKI 824

Query: 793 YIFSTPAKGTLIEIIFPLYDTS 814
            + S   +GT I++  PL   +
Sbjct: 825 KVKSEFEQGTQIQVNLPLVTQT 846


>gi|94500179|ref|ZP_01306713.1| probable sensor/response regulator hybrid [Oceanobacter sp. RED65]
 gi|94427752|gb|EAT12728.1| probable sensor/response regulator hybrid [Oceanobacter sp. RED65]
          Length = 908

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 80/244 (32%), Positives = 124/244 (50%), Gaps = 9/244 (3%)

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           Q +N+    +  AE ES  K++FLA +SHEIRTPL  I+G S+++KN       N     
Sbjct: 416 QAENESQQIRIAAEAESRAKNEFLAMMSHEIRTPLNGIMGMSDLLKNTNM----NETQSR 471

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           Y N I  SG  +L I+ND+LD SKI +GK+ +   P+ L + + +   +      +K I 
Sbjct: 472 YVNTIYHSGESLLGIINDILDFSKILAGKLEIESVPIHLLDLLDQCAGIFAKDIEKKDID 531

Query: 686 IRTSF-ANNIPRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRVRD 743
           +           I +D   ++Q+ LN LSNAI FT  G  Q+I+S        + L+V+D
Sbjct: 532 VTLELVPAKDIVIESDPVRLRQVILNYLSNAIKFTQKGSVQLILSV---EGNTLNLKVKD 588

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TG+G+   +     + F Q   S   +  GTGLGL + K + +   G   + S   +G++
Sbjct: 589 TGIGIPPCKQASLFEAFAQADTSTTRQYGGTGLGLAICKKIAELMGGGVSVESNENEGSV 648

Query: 804 IEII 807
            E  
Sbjct: 649 FEFY 652


>gi|326539813|gb|ADZ88028.1| histidine kinase [Brucella melitensis M5-90]
          Length = 821

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 131/724 (18%), Positives = 264/724 (36%), Gaps = 49/724 (6%)

Query: 110 AFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL--WPIEGTNLYVPIDLAALP 167
              ++G                  G  L+ Q+    +  +     +     + ++     
Sbjct: 112 RADVVGQLPDACGAPQDRPAFLAFGRWLRPQSVTALERAISTLREQARAFDLTVETVNGS 171

Query: 168 IYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ 227
           +   +   SG  GF +    +     +A    L+ +   L +  +    +          
Sbjct: 172 LLDVHGRTSG--GFAVA-CFQSLQGVQAERASLEAQNRELADRIELMRRLLDRIEQPAWL 228

Query: 228 QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287
           +     +   N   +     A+    + +E   L  ++     E++ F    + +     
Sbjct: 229 RDGNGRIEWVNLAYAQAVDMANASQ-VISEGRELFGAQARQRLERDRFAEPVVQEQLTAV 287

Query: 288 YFGTLQ--------NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG 339
             G  +          S             ++            ET+D+      ++   
Sbjct: 288 VHGDRRVFDVIDVSAESGSVGLGFDLTEVQAVRDELSRTLKSHAETLDQLSTAVAIFDPE 347

Query: 340 -NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398
             L + N +F+ L     V  +E     + + D  +       +P      D    A  A
Sbjct: 348 MKLQFFNQAFVKLWGL-DVAWLETRPSNTLIFDRLRAEGKLPEQPEWRKWKDSLLSAYRA 406

Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI- 457
                    E    M  +P  +  +   N    G      +    K ++E     L  + 
Sbjct: 407 V--------EPEEHMWHLPDTRTMRVVANPHPQGGVTWFFENMTEKFELEGRYNTLIKVQ 458

Query: 458 ---LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYL 513
              L+  ++ +A+   +G +  +N + + L+  P E +      ++  +       +   
Sbjct: 459 GETLDHLAEAVAVFGSDGRLRLSNPSFAALWSLPSEMVREGTHISIIAKLCNQRGGDGLW 518

Query: 514 TEILSLDLRQTLEKITL---GSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570
            + +S       ++          +  +LS  ++           LT  D+++  + +  
Sbjct: 519 EDFVSTVTGFLDQRDGRMGQVELSDGAILSFAVVPLP---KGQTMLTFIDVTDTVRVERA 575

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           L    +  E     K+DF+  VS+E+R+PLT IIGF+E+++   FG L N R +EY ++I
Sbjct: 576 LKEKNEALELADQIKNDFVQHVSYELRSPLTNIIGFTELLQTPAFGSL-NERQLEYLDHI 634

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
             S +++L IVND+LD++ +++G M L    VS+ EA+S A S V     +  I +    
Sbjct: 635 STSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEAISAAASRVSERLRDHNIGLDVDI 694

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
           A+++    AD   V+Q+  N+LSNA+++ P G  I++        +V+  V D G GM +
Sbjct: 695 ADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVLQVA-RDGADVVFAVHDDGHGMPS 753

Query: 751 YELEKAMKPFGQIPN-----SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
             L+   K F   PN        +          + K+ V+ + G+  I +   +GT + 
Sbjct: 754 EVLDTVFKRFQSYPNGGRRRGAGLGLA-------IVKSFVELHGGRVEIDTGEERGTTVI 806

Query: 806 IIFP 809
             FP
Sbjct: 807 CRFP 810


>gi|298376091|ref|ZP_06986047.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_19]
 gi|298267128|gb|EFI08785.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_19]
          Length = 757

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 86/391 (21%), Positives = 158/391 (40%), Gaps = 33/391 (8%)

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEAT-------SDGIAIINREGIILSTNRAVSKLFG 486
             E    +  +  +  E   L   LE+        S+G+   + +           K   
Sbjct: 378 RREASHKKQAQESLRKEKEFLSLALESGDIFAFRYSNGVFEFDHD---------FYKSLD 428

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
             ++ I    F   +          +   +L              +   +  +       
Sbjct: 429 MLIKPITSTQFQESIHPEDREDFIQH-KHLLDTGFPSRKITRRRYNFNGKGHIWWEFRYA 487

Query: 547 KLPFSS-------CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
           +              +    +I + K+ +  L  A+  AE+    KS FLA +SHEIRTP
Sbjct: 488 QAKNGQDSTRNNVGVNGLCLNIQQSKEVEEDLIKARIRAEEADQMKSAFLANMSHEIRTP 547

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L AI+GFSE++ +     +      E+   I ++ +L+L ++ND+LD+S+IESGKM+   
Sbjct: 548 LNAIVGFSELLTSDM--EISPNERDEFMQVISKNSDLLLKLINDILDLSRIESGKMSFTL 605

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719
               L+E +S      QL   +  + ++         I ADL  + Q+  N+++NA  FT
Sbjct: 606 TNCDLNELLSHIYRTHQLLMPQ-GVALKIQLPVLPAIIQADLHRLTQVITNLINNAAKFT 664

Query: 720 PSGGQIIISTTHT-SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
             G  I+I   +T     + + V DTG G+   +  +  + F ++        +GTGLGL
Sbjct: 665 TQG-YILIKYDYTQDKRWIQISVTDTGKGIPADKQAQVFERFNKLD----EFAQGTGLGL 719

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            + + +++   G   + S   +G+   +  P
Sbjct: 720 AICQIIIEHFGGYITLESKEGEGSTFIVTLP 750


>gi|154253018|ref|YP_001413842.1| multi-sensor hybrid histidine kinase [Parvibaculum lavamentivorans
           DS-1]
 gi|154156968|gb|ABS64185.1| multi-sensor hybrid histidine kinase [Parvibaculum lavamentivorans
           DS-1]
          Length = 840

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 98/635 (15%), Positives = 199/635 (31%), Gaps = 47/635 (7%)

Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR---MKNKVSSLTEYYAHKDD 252
              R     +           V   +  +         L       + + L    A + D
Sbjct: 86  ALTRSPLAAADALTALPDPCYVTDRRGSVLFANEAYRSLAGDFDAGRPAPLERLLAGQGD 145

Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK-ESFEYLSHRNHPSL 311
             +        +      E+E            +     L   +    + +         
Sbjct: 146 AAEVVFRLAQAARTGFAAEEEVRLGPRGGPRIYRVVVRPLSGRAGGAVWLFRDLTAERER 205

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
           +   +     +   V+  P  FF     G L + N         + +  ++    L  L+
Sbjct: 206 AEAAENIHKRSLAYVEHAPFGFFAADSDGTLIFMNARLGGWLGMEPLSIVQRRMKLDELV 265

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
                +                       L   +      + +  +      +       
Sbjct: 266 QGEAPALAEGEAE-----ESGQLPPLDVDL---RGAEGRIIPVRIMRTRVRAENGRQGRI 317

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490
             +          +       M+          GIA ++ +  I + N++     G    
Sbjct: 318 FALVLNRTTGDKAEETARDAEMRFARFFNNAPIGIATVDADCRIDNANKSFVAYVG--EG 375

Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
                  T  + +   + +   + + LS  L      + L    E ++  L         
Sbjct: 376 VERGTKLTDLVVEEDRAAVAETIGQALSGRLSAAPVDVRLVRNAE-RVGQLYAARVDTGA 434

Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
            +   + + D +E K  + + + ++K+              V+H+    LTAIIGF +++
Sbjct: 435 GASLVVYLIDATEQKSLELQFAQSQKM-----QAVGQLAGGVAHDFNNLLTAIIGFCDLL 489

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
             +     G+P + +    I ++ N   ++   LL  S+    +  L  + +SL +AV+E
Sbjct: 490 LARH--QAGDPSFADVVQ-IKQNANRAANLTRQLLAFSR----RQTLRPKVLSLTDAVAE 542

Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
             +L+     EK + ++     ++  +  D   ++Q+ +N+  NA    P GG++ I T 
Sbjct: 543 LQNLLARLLTEK-VELKIVHGRDLGLVKVDQNQLEQVIINLAVNARDAMPDGGKLTIRTA 601

Query: 731 --------------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
                             E +++ V DTG G+    L K  +PF    +      +GTGL
Sbjct: 602 NVSEADSRALDHPLMPHGEYLLIEVADTGHGIPKENLGKIFEPFYTTKDP----SKGTGL 657

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
           GL     +V    G  + +ST  KGT   I  P Y
Sbjct: 658 GLSTVYGIVKQTGGFIFPYSTIGKGTTFRIYLPRY 692



 Score = 41.9 bits (97), Expect = 0.44,   Method: Composition-based stats.
 Identities = 49/404 (12%), Positives = 99/404 (24%), Gaps = 41/404 (10%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK 146
           +  D+ G L  ++  L   +G     ++  R+     +    P    G+  +        
Sbjct: 228 FAADSDGTLIFMNARLGGWLGMEPLSIVQRRMKLDELVQGEAPALAEGEAEESGQLPPLD 287

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRG--FGIVHVNRVDNDPRALGKRLDKKF 204
             L   EG  + V I      + +R R  +G +G  F +V      +      +  + +F
Sbjct: 288 VDLRGAEGRIIPVRI------MRTRVRAENGRQGRIFALVLNRTTGDKAEETARDAEMRF 341

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK--NKVSSLTEYYAHKDDVLKTEKYPLL 262
           +          +       I +          +   + + LT+    +D     E     
Sbjct: 342 ARFFNNAPIGIATVDADCRIDNANKSFVAYVGEGVERGTKLTDLVVEEDRAAVAETIGQA 401

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
            S   S    +     N  +  +                YL                   
Sbjct: 402 LSGRLSAAPVDVRLVRNAERVGQLYAARVDTGAGASLVVYLIDATEQKSLELQFAQSQKM 461

Query: 323 PETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
              V +       +   NL  A   F  L        +                  NA +
Sbjct: 462 QA-VGQLAGGVA-HDFNNLLTAIIGFCDLL-------LARHQAGDPSFADVVQIKQNANR 512

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
              L R           L   +        ++        Q              +    
Sbjct: 513 AANLTRQL---------LAFSRRQTLRPKVLSLTDAVAELQNLLARLLTEKVELKIVHGR 563

Query: 443 NKRKMEIEVMQLCSIL--------EATSDGIAIINREGIILSTN 478
           +   ++++  QL  ++        +A  DG      +  I + N
Sbjct: 564 DLGLVKVDQNQLEQVIINLAVNARDAMPDG-----GKLTIRTAN 602


>gi|298247425|ref|ZP_06971230.1| multi-sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297550084|gb|EFH83950.1| multi-sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 624

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 89/506 (17%), Positives = 190/506 (37%), Gaps = 48/506 (9%)

Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405
           P F      +  D +                   A +   L  +             +  
Sbjct: 117 PIFWEGVPVRIADVLAHTHAFGVHHHDMSPERIKAARQAALDYAQGRITKEKLLSVGVPE 176

Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPED--VDTRIN-------KRKMEIEVMQL-- 454
           N     +   +P    +         G    D   +           +  + ++  +L  
Sbjct: 177 NHPVVRSFLGVPLLDRSSVVRGGLLLGRSVPDHFTEEDEALLLGLGTQAAIALDNARLYH 236

Query: 455 ---------CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP-FTVFLEQN 504
                     +I E  +DG+ +++  G IL  N+A   +     ++   +   T  L   
Sbjct: 237 SAYIHALETDAIFEHIADGVMLMDVNGCILRENQAARHIRELLQDEQNHRQEITALLAGP 296

Query: 505 TPSVMNHYLT---------EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--- 552
             S                   S ++R+ +  ++     +  ++ +    +         
Sbjct: 297 IQSATTERRDLNFTVTAVVNTSSNEVREYMVNVSPLHLPKASIVPMHPRNRTTMEEQSLM 356

Query: 553 --CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
                +  HD++E ++             +    K +F+   +HE+RTPL  + GF++ +
Sbjct: 357 ASGAVVVWHDVTETRRL--------MAYAEAEQLKDEFITIAAHELRTPLAVLKGFAQTL 408

Query: 611 K---NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
                +  G       +E    ID++ + ++D+ +DLLD++++++G + LHFEPV L   
Sbjct: 409 LVQTARGKGAELAEWQVEALQNIDQATSRMVDLASDLLDVARLQAGSLLLHFEPVDLIAL 468

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727
           +   ++ +Q+      + +     + +  I  D + ++Q+  NI+ NAI ++P GG I I
Sbjct: 469 LKRVVTRLQVTTECHTLTLHIFTDHFVVDI--DQQRIEQVLTNIIGNAIKYSPLGGVIQI 526

Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
                    V++ V+DTG+G+   +  +    F +  N+      GTGLGL L + +V+ 
Sbjct: 527 DVDAQQQNTVLVSVKDTGIGIPEQQQGQIFGRFMRADNALNEGIAGTGLGLYLCRELVER 586

Query: 788 NMGKFYIFSTPAKGTLIEIIFPLYDT 813
           + G  +  S   +G+   + FP+  +
Sbjct: 587 HGGHTWFESMEGEGSTFYLSFPVSSS 612


>gi|262395842|ref|YP_003287695.1| hypothetical protein VEA_000544 [Vibrio sp. Ex25]
 gi|262339436|gb|ACY53230.1| hypothetical protein VEA_000544 [Vibrio sp. Ex25]
          Length = 828

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 83/258 (32%), Positives = 135/258 (52%), Gaps = 11/258 (4%)

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
               + E +++ +++ HAK+ A   +  KS FLA +SHEIRTPL  I+G +E++      
Sbjct: 301 VNRVVEEKQRQTDEILHAKESAVSANRAKSVFLANMSHEIRTPLNGIMGMTEILSQSELS 360

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
                   E  + ID S   +L ++ND+LD+SKIESG++ L      + E V +++ L Q
Sbjct: 361 S----HQQEVVDDIDSSSQTLLTLLNDILDLSKIESGRLELSLVEADIREVVYQSMVLFQ 416

Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
             A  K++ +  + A NIP R++ D   +KQ+  N++SNA+ FT SG  I +  ++    
Sbjct: 417 SKATSKQLELGINLAENIPTRVMVDDHRIKQVITNLVSNAVKFTESG-HIRVDVSYDELS 475

Query: 736 E-----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
           E     ++ +V DTG+G+   +L    +PF Q       +  GTGLGL + + +V    G
Sbjct: 476 EKECGVLMFKVEDTGIGIEQDKLTTIFEPFTQEDEGVSRQFGGTGLGLAICRQLVSMMGG 535

Query: 791 KFYIFSTPAKGTLIEIIF 808
           +    ST   GT  E   
Sbjct: 536 QLIATSTKGVGTCFEFSI 553


>gi|228964063|ref|ZP_04125190.1| hypothetical protein bthur0004_9200 [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228795633|gb|EEM43113.1| hypothetical protein bthur0004_9200 [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 896

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 78/341 (22%), Positives = 148/341 (43%), Gaps = 24/341 (7%)

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            +D++++            +    +  +L      T E        + +   L++  ++L
Sbjct: 395 HQDLIQQTVDNLGLTIHSIMGRMRIQTLLHESQAMTEELQVQSEELQTQAEELQMQAEEL 454

Query: 549 PFSSCYSLTMHDISEWKQEKN-----KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
             ++    +  + +E K         +L        + S +KS+FLA +SHE+RTPL +I
Sbjct: 455 RTTNEQLESRTEEAEQKTADLQITKLELEEKASELLRSSKYKSEFLANMSHELRTPLNSI 514

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +  SE+++      L +    E A  I  SG  +L ++ND+LD+SK+E+GK+++ FE  +
Sbjct: 515 LLLSEMLRENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDIIFEATN 573

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSG 722
           + +  +         A +K +      ++ IP +   D + ++QI  N+LSNA  FT  G
Sbjct: 574 ISDMAANMHQNFLHIAAQKNVEFTIEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKG 633

Query: 723 GQIIISTTHTS--------------NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
               +S                    E + + V+DTG+G+   + +   + F Q   +  
Sbjct: 634 S---VSLHFNPIETTNLSHDMQSISKEWITISVKDTGIGIAKEQHQLIFEAFQQADGATI 690

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            +  GTGLGL + K       G   + S   +G+   +  P
Sbjct: 691 RKYGGTGLGLSICKEFARLLGGWITLESNLGEGSTFTVYIP 731


>gi|218234881|ref|YP_002365770.1| sensor histidine kinase/response regulator [Bacillus cereus B4264]
 gi|218162838|gb|ACK62830.1| sensor histidine kinase/response regulator [Bacillus cereus B4264]
          Length = 896

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 78/341 (22%), Positives = 150/341 (43%), Gaps = 24/341 (7%)

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            +D++++            +    +  +L      T E        + +   L++  ++L
Sbjct: 395 HQDLIQQTVDNLGLTIHSIMGRMRIQTLLHESQAMTEELQVQSEELQTQAEELQMQAEEL 454

Query: 549 PFSSCYSLTMHDISEWKQEK-----NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
             ++    +  + +E K        ++L        + S +KS+FLA +SHE+RTPL +I
Sbjct: 455 RTTNEQLESRTEEAEQKTADLQITKSELEEKASELLRSSKYKSEFLANMSHELRTPLNSI 514

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +  SE+++      L +    E A  I  SG  +L ++ND+LD+SK+E+GK+++ FE  +
Sbjct: 515 LLLSEMLRENHDNNLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDIIFEATN 573

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSG 722
           + +  +         A +K +      ++ IP +   D + ++QI  N+LSNA  FT  G
Sbjct: 574 ISDMAANMHQNFLHIAAQKNVEFTIEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKG 633

Query: 723 GQIIISTTHTS--------------NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
               +S    S               + + + V+DTG+G+   + +   + F Q   +  
Sbjct: 634 S---VSLHFDSIETTNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGATI 690

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            +  GTGLGL + K       G   + S   +G+   +  P
Sbjct: 691 RKYGGTGLGLSICKEFARLLGGWITLESNVGEGSTFTVYIP 731


>gi|331663725|ref|ZP_08364635.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           TA143]
 gi|284922211|emb|CBG35293.1| two-component system sensor kinase [Escherichia coli 042]
 gi|331059524|gb|EGI31501.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           TA143]
          Length = 608

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 82/371 (22%), Positives = 170/371 (45%), Gaps = 28/371 (7%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            + +         I+E  +DG+  I+R+G + + N A   + GY   +++ +P+++    
Sbjct: 254 AQALRETRTLNDLIIENAADGVIAIDRQGDVTTMNPAAEVITGYQRHELVGQPYSMLF-- 311

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMH 559
              +     + + L                ++ + + L +   ++  +        +   
Sbjct: 312 -DNTQFYSPVLDTLEHGTEHV-ALEISFPGRD-RTIELSVTTSRIHNTHGEMIGALVIFS 368

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           D++  K+ + +++ A+++A        + +A V+HE+R PLTAI G+ ++++ Q    + 
Sbjct: 369 DLTARKETQRRMAQAERLAT-----LGELMAGVAHEVRNPLTAIRGYVQILRQQTSDLI- 422

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
              + EY + + +  + +  ++  LL+ S+    +    ++ VSL+  V E + LVQ   
Sbjct: 423 ---HQEYLSVVLKEIDSINKVIQQLLEFSRPRHSQ----WQQVSLNALVEETLVLVQTAG 475

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
            + R+   +   N +  I AD   +KQ+ LNIL NA+    + G+I I T   S+ +  +
Sbjct: 476 VQARVDFISELDNELNPINADRELLKQVLLNILINAVQAISARGKIRIQTWQYSDSQQAI 535

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            + D G G+     +K   PF     S      GTGLGL L++ +++A+ G   + S P 
Sbjct: 536 SIEDNGCGIDLSLQKKIFDPFFTTKAS------GTGLGLALSQRIINAHQGDIRVASLPG 589

Query: 800 KGTLIEIIFPL 810
            G    +I P+
Sbjct: 590 YGATFTLILPI 600



 Score = 40.8 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 12/117 (10%), Positives = 37/117 (31%), Gaps = 6/117 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G +  ++       G    +++G     +    +    + + D L+          
Sbjct: 278 IDRQGDVTTMNPAAEVITGYQRHELVGQPYSMLF--DNTQFYSPVLDTLEHGTEHVALEI 335

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
            +P     + + +  +   I++ + E  G     I        + +    + ++  +
Sbjct: 336 SFPGRDRTIELSVTTS--RIHNTHGEMIGA--LVIFSDLTARKETQRRMAQAERLAT 388


>gi|73538299|ref|YP_298666.1| PAS [Ralstonia eutropha JMP134]
 gi|72121636|gb|AAZ63822.1| PAS [Ralstonia eutropha JMP134]
          Length = 679

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 87/418 (20%), Positives = 180/418 (43%), Gaps = 14/418 (3%)

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468
             + +                   +  +   ++    ++   +    ++L++    + + 
Sbjct: 73  PIVWLALSLTLLLASALFAARVRVLRRQLARSQACTARLRQRLTLHTAVLDSIPLPVYVR 132

Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE----QNTPSVMNHYLTEILSLDLRQT 524
           + +  +++ NR   +L G     +   P  +  +        + ++    ++++     +
Sbjct: 133 DAQQRLITCNRRYEELVGASRASLRGLPPDMPEQLAGVITDAAELSEDYRDVIASGRALS 192

Query: 525 LEKITLGSTKEEKLL-SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
            ++      ++  +L  +  +       +  +    D++E      +L+ AK  AE  + 
Sbjct: 193 KDRCLHIQGEKRHVLNWVAPLQGPGKTVTALAGGWVDLTERHDMLAQLAEAKARAEAANR 252

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
            KS FLA VSHEIRTP+ A+ G  E+   +   P          +    S   +L +++D
Sbjct: 253 AKSTFLASVSHEIRTPMNAVAGMIELALKRPEMPSDE---RRMLSTAHDSALALLALIDD 309

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLR 702
           +LD+SK+E+GK+ +H  P SL   V E + ++   A +K + +       I    + D  
Sbjct: 310 ILDLSKMEAGKLRVHPVPASLPALVEEVLQMLGPVAAQKPLPLVPVVDPGIAAAHMVDPL 369

Query: 703 SVKQIALNILSNAIHFTPSGGQIIIST----THTSNEEVILRVRDTGVGMTNYELEKAMK 758
            VKQ+  N++SNAI FT  G ++ +       H   +E++L V DTG+G+ + +  +  +
Sbjct: 370 RVKQVLGNLVSNAIRFTDKG-EVRVHLHGGPVHAGKQEIVLTVADTGIGIAHADQARLFQ 428

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           PF Q  +  + +  GTGLGL + + +V A  G+  + S    GT + +   L     P
Sbjct: 429 PFEQAHDRSRPQSGGTGLGLAICRRLVAAMGGQIRLESRAGAGTSVRVTLRLRTACLP 486



 Score = 41.9 bits (97), Expect = 0.39,   Method: Composition-based stats.
 Identities = 44/433 (10%), Positives = 111/433 (25%), Gaps = 56/433 (12%)

Query: 73  TFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMR---LCDVSDILHIDP 129
           T V D IP      +  DA   L   +    + +G     + G+       ++ ++    
Sbjct: 119 TAVLDSIPLP---VYVRDAQQRLITCNRRYEELVGASRASLRGLPPDMPEQLAGVITDAA 175

Query: 130 N--NHIGDLLKRQNTWYGKTTLWPIEGTNLYV--PIDLAALPIYSRNREFSGFRGFGIVH 185
                  D++        K     I+G   +V   +     P+    +  +   G  +  
Sbjct: 176 ELSEDYRDVIASGRALS-KDRCLHIQGEKRHVLNWV----APLQGPGKTVTALAGGWV-- 228

Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE 245
                +D  A       +    +  K    +    +                 +++    
Sbjct: 229 DLTERHDMLAQLAEAKARAEAANRAKSTFLASVSHEIRTPMNAVAGMI-----ELALKRP 283

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
                +  + +  +    +  + + +  D   +   +        +L    +E  + L  
Sbjct: 284 EMPSDERRMLSTAHDSALALLALIDDILDLSKMEAGKLRVHPVPASLPALVEEVLQMLGP 343

Query: 306 RN-----------HPSLSAYFDEGENLTPETVDKCPIP---------FFVYSHGNLFYAN 345
                         P ++A          + +                 V+ HG   +A 
Sbjct: 344 VAAQKPLPLVPVVDPGIAAAHMVDPLRVKQVLGNLVSNAIRFTDKGEVRVHLHGGPVHAG 403

Query: 346 PSFLLLT--------KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV--MLYRSDRTCIA 395
              ++LT         +     +      +     P+         +   L  +    I 
Sbjct: 404 KQEIVLTVADTGIGIAHADQARLFQPFEQAHDRSRPQSGGTGLGLAICRRLVAAMGGQIR 463

Query: 396 ASARLHTIQWNRE----NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV 451
             +R       R      +  +  +P   A         +       D   N+  ++ ++
Sbjct: 464 LESRAGAGTSVRVTLRLRTACLPVMPEPAALSACAAATDSLHVLVVDDHAPNRLLLKWQL 523

Query: 452 MQLCSILEATSDG 464
             L   ++  +DG
Sbjct: 524 EHLGHRVDTAADG 536


>gi|284037645|ref|YP_003387575.1| PAS/PAC sensor signal transduction histidine kinase [Spirosoma
           linguale DSM 74]
 gi|283816938|gb|ADB38776.1| PAS/PAC sensor signal transduction histidine kinase [Spirosoma
           linguale DSM 74]
          Length = 679

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 92/512 (17%), Positives = 177/512 (34%), Gaps = 67/512 (13%)

Query: 341 LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400
           +   NP+  L+    S   I    G + L   P L+    +   +            A  
Sbjct: 190 IEMVNPAASLINGLASEQLI----GKTLLTVFPVLAGTPLMAGYLHTAQTGQVQRLEAHY 245

Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
                N      +   P                  +  D    +     +V  +  I E+
Sbjct: 246 QDDNVNG--WFEVIASPLP-------QQRVLISFLDITDRHQAETAYFHQVGLMQRISES 296

Query: 461 TSDGIA----IINREGII-----LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
              GI     I+++ G I        N    +  G  ++ + R+     L  +    M  
Sbjct: 297 GHIGIMTHRPILDKTGHIQDFAFTYVNEQAQRWLGVDLQLVTRQSVRSLLGGDDKEEMVR 356

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN-- 569
            + +++       +E        + ++L L I             T  D+++ +Q +   
Sbjct: 357 QMAQVVKTGESAQIETTL----PDGRVLFLVISPL----EGGCVTTFMDVTQQRQVEQQK 408

Query: 570 -----------------------------KLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
                                        +L  A    ++ S  K  F+A  SHE RTPL
Sbjct: 409 RYNAELEQQVAERTLALQKSMARLKQSKDELQVALAKEKQLSELKGRFVAMASHEFRTPL 468

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
           T I+  +  +           +  ++   I ++   +  I+ + L   K+  G++ +   
Sbjct: 469 TTILSSA-GLLELYQTSDQKDKRQKHIQRIRQAVKQLNSILEEFLSSDKLTEGQVTVRPV 527

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720
              L   V+E I  +      ++  IR S +   P +  D   +++I +N+LSNAI ++ 
Sbjct: 528 LCDLPRLVNEVILDLGDTLKVQQ-TIRLSLSCPQP-LWVDESLLRKILINLLSNAIKYSG 585

Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
            G  I +  +   +  + L V D G+G++  +     + F +  N       GTGLGL +
Sbjct: 586 PGSIITLDGSCKPH-LLTLTVSDQGIGISAEDQLHLFERFFRASNVTN--ISGTGLGLHI 642

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
            +  V+   G+  + S   +GT I +  PL +
Sbjct: 643 VRQYVELMNGQISLESELHQGTRITLTLPLTE 674



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/351 (11%), Positives = 84/351 (23%), Gaps = 55/351 (15%)

Query: 324 ETVDKCPIPFFVYS----------HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
             +D  P    +Y                Y N +   +T                    P
Sbjct: 10  ALLDALPQALVLYQPLTDQQGHLTDFTTRYFNQALKAITPLTDQQLQTQTLFQRH----P 65

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
               +      +L       +   A  H  +W       +      + +   +  P    
Sbjct: 66  STRQHLDSFNALLKTQQGFSLDYHA-PHLSKWYSMTFQYLNGDMCCRYDDITDQKPTGSS 124

Query: 434 EPEDVDTRIN---------KRKMEIE-------VMQLCSILEATSDGIAIINR------- 470
                + +            + ++            L  IL  + +G+            
Sbjct: 125 VQNLAEEQPQGLNHQLADLVKALQATNQQLLQQQDFLEGILNGSQNGLMSCAPVYNETDQ 184

Query: 471 --EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528
             +  I   N A S + G   E ++ K           + +             Q LE  
Sbjct: 185 IVDLCIEMVNPAASLINGLASEQLIGKTLLTVFPVLAGTPLMAGYLHTAQTGQVQRLEAH 244

Query: 529 TLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
                         +I   LP      ++  DI++  Q +    H   + ++ S   S  
Sbjct: 245 YQDDNVNG---WFEVIASPLP-QQRVLISFLDITDRHQAETAYFHQVGLMQRISE--SGH 298

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY---ANYIDRSGNL 636
           +  ++H        I+  +  I++  F  +              + R    
Sbjct: 299 IGIMTH------RPILDKTGHIQDFAFTYVNEQAQRWLGVDLQLVTRQSVR 343


>gi|268318211|ref|YP_003291930.1| histidine kinase [Rhodothermus marinus DSM 4252]
 gi|262335745|gb|ACY49542.1| histidine kinase [Rhodothermus marinus DSM 4252]
          Length = 352

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 67/287 (23%), Positives = 134/287 (46%), Gaps = 8/287 (2%)

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
           L +  L   +     +L +                 I +  +    L    +  ++  ++
Sbjct: 69  LARELLRQIRRRSFENLELAHVPQGDELNSL-----IWQVYRTGRTLEKEIEELKRMENY 123

Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
           + +FL  VSHE++TP+ +I GF+E +      P        +   I R+ + + ++V DL
Sbjct: 124 RREFLGNVSHELKTPIFSIRGFTETLLE--ADPGDEATRRAFLEKILRNADRLANLVRDL 181

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704
            +IS++E+G++ L   P  L   V E +  ++  A  +++ +R     N+P +L D   +
Sbjct: 182 TEISRLETGELQLQPVPFELPALVREVLESMEPLAATRQVSLRCCVPENLPHVLGDRERL 241

Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764
           +Q+ +N++ NAI +   GG + +      +  V + V D G+G+    + +  + F ++ 
Sbjct: 242 RQVLINLVDNAIKYNNPGGFVEVRLQ-EQDGSVRVAVVDNGIGIAPQHIPRLTERFYRVD 300

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
            S+     GTGLGL + K +++A+  +  I STP KG+      P+ 
Sbjct: 301 RSRSREQGGTGLGLAIVKHILNAHQTRLEIESTPGKGSTFAFRLPVA 347


>gi|116695907|ref|YP_841483.1| sensor protein rcsC [Ralstonia eutropha H16]
 gi|113530406|emb|CAJ96753.1| Sensor protein rcsC [Ralstonia eutropha H16]
          Length = 1131

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 106/636 (16%), Positives = 201/636 (31%), Gaps = 32/636 (5%)

Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253
            A   RL +        ++             ++ S     + +     L    A    +
Sbjct: 143 PAQYVRLRQIALAAVATQQAFDLDHGAYAVALNEDSAVVISQPEAGAPPLALDPALIPLL 202

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYF---GTLQNNSKESFEYLSHRNHPS 310
                  LL     S+P +E    +   ++               + ++   L     P 
Sbjct: 203 RTWLTQALLERSGRSVPAREQQVWVGPLRHPVDDTPVMVLAGAAYAGDTPTMLVAACVPL 262

Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
            +   D      P  +            G +   +P       + +           T L
Sbjct: 263 HAFLADLQRAEDPALLALLNPA------GQVIDVSPQ-----DWPAASASVNDVAAGTRL 311

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN-SLAMTFIPFEKANQFPENMP 429
            +    D      + L +               +      +  +  I             
Sbjct: 312 LSHSRLDVTPSG-MRLVQPLPAGFGQLVYHLPYRMLGTALAAELAVIAGAMLLLTGAIGL 370

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQL--CSILEATSDGIAIIN-REGIILSTNRAVSKLFG 486
                   +  R +         +L    ++ AT  G+ I+   +  +L++N     L  
Sbjct: 371 AARYWSRHLLRRTHAEASRALESELMNQVLVNATPIGLCIVRQHDYAVLTSNPLAGVLLQ 430

Query: 487 YPVEDILRKPFTVFL--EQNTPSVMNHYLTEILSLDLRQTLEKITLGS-TKEEKLLSLRI 543
           +     L          +    S     ++        +       G     +  L +  
Sbjct: 431 WQPHGHLPDAVAEAFKKQPCGGSSGQASISSFTVAAPPRVPADEPSGHGDATQHFLQITY 490

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
              +    +     + D +  +  + +L  A++  E     +S F A +SHEIRTPL A+
Sbjct: 491 APARYRDEAVLFCAVQDCTAQQALQEQLRSAQQATEAMMRARSTFFAAMSHEIRTPLNAL 550

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +G  E++          PR       +D +   +  IVND+LD SKI++GK+ L   P  
Sbjct: 551 LGNLELLARGSGLAAHAPR----LRALDSAAEALRRIVNDVLDFSKIDAGKLRLVNAPFR 606

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSG 722
             EA+             + I      + ++   +  D   + Q+  N+LSNA  FT SG
Sbjct: 607 PVEALESVALTHAPMVAGRPIRFHLQLSPSLDAEVTGDRMRLVQVLNNLLSNAFKFTASG 666

Query: 723 GQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
            +I ++     +      ++ RV D+G+GM      +  +PF Q   +   R  GTGLGL
Sbjct: 667 -RITLNGELRQDHHGTQRLVCRVSDSGIGMPPSLAARVFQPFVQGDAATASRYGGTGLGL 725

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
            +   + +   G   + S P  G+   +  PL   +
Sbjct: 726 SICARLCELMGGSISVDSVPDVGSAFTVSVPLPAAA 761


>gi|227814547|ref|YP_002814556.1| sensor histidine kinase [Bacillus anthracis str. CDC 684]
 gi|227004812|gb|ACP14555.1| sensor histidine kinase [Bacillus anthracis str. CDC 684]
          Length = 509

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 90/508 (17%), Positives = 177/508 (34%), Gaps = 41/508 (8%)

Query: 314 YFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                E      +   P+    +  +G+    N    ++T Y + + I     L  L   
Sbjct: 21  LLTRKEEELHTILQNMPVMVDALDYNGDFVLWNRECEIVTGYTAEEVIGNPDALQLLYPD 80

Query: 373 PKLSDNNAIKPVML----YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
                    K +         +      +  + TI W+                      
Sbjct: 81  HNYRHEIQKKFLTRGKNFRDWEMRLTCKNGEIKTIMWSN-----------ISEQFPVSGF 129

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
               +  +    +  + K++ +  +L  I +A  D   +   +G I+         F  P
Sbjct: 130 SYWAVGVDITHLKAIEEKLKQQTSELELIFQALPDLCFLTEDDGTIIDYKAGSPTKFYVP 189

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            E  + K F   L  +    +   + ++        +E     +   +           L
Sbjct: 190 AEAFMGKKFYEVLPSSVAQKLQEAICQVKEKGTNVIVEYPLTINESIDFF---EARCLPL 246

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                  + + DI+E K+ +  L+ +  IA           A V+HE+R PLT I GF +
Sbjct: 247 LHDK-IMIIVRDITERKKTEELLNKSDTIA-----AIGQLAAGVAHEVRNPLTVIKGFIQ 300

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
                    +      +Y + +      +  I+ + L I+K +     +  E  ++ +  
Sbjct: 301 ------LFQINKEDQEKYFDLMLSEIERIEAILQEFLSIAKTD----EISTEKKNIYQIF 350

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
              +SL+   A    I +     +    I      +KQ+ +NIL N+I   P GG+I I 
Sbjct: 351 KNVVSLINTKAIMTNIQVELYTDSKDIIIECSENQLKQVFINILQNSIEAMPDGGRISIH 410

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                 + +I+ V D G+G+    +++  +PF         + +GTG+GL L+  +++++
Sbjct: 411 IKEIGKDGIIISVIDKGIGIPAERIKRLGEPFY------STKEKGTGIGLMLSYKIIESH 464

Query: 789 MGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
            G   I S    GT + I  P   +  P
Sbjct: 465 QGNISIMSEVGVGTTVTIYLPKIQSKKP 492


>gi|242277822|ref|YP_002989951.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           salexigens DSM 2638]
 gi|242120716|gb|ACS78412.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           salexigens DSM 2638]
          Length = 761

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 87/515 (16%), Positives = 170/515 (33%), Gaps = 48/515 (9%)

Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
                 +         +  P    V      L   N SF         +  E   G    
Sbjct: 275 QHDELRKQRGSYQSLFEGVPCLITVQDRNYRLIQYNQSFA--------ERFEARPGDYCY 326

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
                        PV    +D      +        +   +  +        +   E + 
Sbjct: 327 RAYKGRDCKCEECPVEKTFADGK--PHTTEEVGYYRDGSQAHWIVNTA-PIYDDKGEVVA 383

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYP 488
              +  +    +  + +++    + C+I     + + ++      I+  N+    L+GY 
Sbjct: 384 AMEMCLDITRRKRLEVELKASEKKYCAIFNNIPNAVLVLAVENMQIIDCNQTAQTLYGYT 443

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR--IIIK 546
             +++R+        +        +    SL   +         TKE +       I   
Sbjct: 444 KGELIRRSAFELAAPDEFDTNRKAMESAQSLKQTK-------HLTKEGESFWASTSITTA 496

Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
           +        + + DISE  + + +L  A K+A        +    V+HE+  PL  +   
Sbjct: 497 EFDDLPVLLMVVTDISERIRSEEQLVQASKMAT-----LGEMATGVAHELNQPLATLQIA 551

Query: 607 SEVIKNQ--RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           + + K +  +  P+        +  I  +      I+N + +  +    K N+  E V L
Sbjct: 552 ANIFKRKLKKNAPIERETLENMSAKISNNVGRATKIINHMREFGR----KANIETEQVEL 607

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF------ 718
           +E +  A            I +     +N+P I AD   ++Q+ +N+L NA         
Sbjct: 608 NEVICRAFDFFSRQLQLHDIDVIWELDDNLPPIQADSNRMEQVFINLLLNARDAILEKCA 667

Query: 719 ----TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
                P   +I + T  T    V   V DTG+G+  + + +  +PF          G+GT
Sbjct: 668 HKDCGPHDRRITLRTRFTLR-HVFAEVIDTGIGIPKHIVPRLFEPFFTTK----EVGKGT 722

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GLGL ++  +V    G  +  S+  +G+   I  P
Sbjct: 723 GLGLSISYGIVTDYGGSIHASSSVLEGSRFVISLP 757



 Score = 58.1 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 16/150 (10%), Positives = 47/150 (31%), Gaps = 10/150 (6%)

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
            I     +      ++  +     S+ E     I + +R   ++  N++ ++ F     D
Sbjct: 264 AINRMASEVGNQHDELRKQRGSYQSLFEGVPCLITVQDRNYRLIQYNQSFAERFEARPGD 323

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
              +      +          + +  +     T E+  +G  ++       +    +   
Sbjct: 324 YCYR----AYKGRDCKCEECPVEKTFADGKPHTTEE--VGYYRDGSQAHWIVNTAPIYDD 377

Query: 552 SCYSLTMH----DISEWKQEKNKLSHAKKI 577
               +       DI+  K+ + +L  ++K 
Sbjct: 378 KGEVVAAMEMCLDITRRKRLEVELKASEKK 407


>gi|94267327|ref|ZP_01290846.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
 gi|93452049|gb|EAT02741.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
          Length = 555

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 91/507 (17%), Positives = 178/507 (35%), Gaps = 44/507 (8%)

Query: 314 YFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
              + ++      D   +   +      +   N     L    +  +I   G        
Sbjct: 80  ELQQAKDELEAIFDTTGVGISIIDQDFMVRRCNEKQRQLLVDPNRQEIIGHGCFEIYCAK 139

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
                +                   A L      ++    +   PF   ++         
Sbjct: 140 ESPGLDCPALETFAT--------GRAALARDVKKKDKYFNVVTTPFA-MDEDGAVSQVIE 190

Query: 433 IEPEDVDTRINKRKMEIEVM-------QLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
           +  +  + ++ +   + +         +L +++E+ S+G+ +I+  G I + NRA  ++ 
Sbjct: 191 VTLDITEKKLAELAEQRQRQFYLQEKDKLATVIESLSEGLLVIDPNGTITTCNRAAGQIT 250

Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
           G+   ++L +P                  ++ +      LE        EE+LL+     
Sbjct: 251 GHGETELLDRPLDQLFP--------SLAKQLTTGREAAGLEFTHRTPEGEERLLAADSNP 302

Query: 546 KKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
              P        +T  D++E K++   L  A+K+A           A V+HE+ TPL +I
Sbjct: 303 MPAPEDEPGGRVITFRDVTEEKKKAQLLFRAEKLA-----AIGQLSAGVAHELNTPLASI 357

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +G++ ++              E    I         I+  LL  ++  S        P  
Sbjct: 358 LGYARLLLKDDNLAAS---QRERLEIIAEQTRRSSTIIKALLSFAR-NSNHTGRSRHPCD 413

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
           L+  V  AI L+     ++RI +       +P ++AD   ++Q+ +N++ N +      G
Sbjct: 414 LNTIVERAIPLLTTDLEKRRIELVLELQP-LPPVIADPGELEQVVINLVLNGVQAIGGDG 472

Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
           +I + T       V+LRV D G G+      +   PF          GEGTGLGL +   
Sbjct: 473 RIRVGTAAQE-GRVLLRVEDNGPGIAPENRSRIFDPFFSTKP----VGEGTGLGLSICAG 527

Query: 784 MVDANMGKFYI-FSTPAKGTLIEIIFP 809
           ++D   G   +  S    G  + +  P
Sbjct: 528 IIDDLGGSIEVAASREG-GAALLVSLP 553



 Score = 39.6 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 23/256 (8%), Positives = 59/256 (23%), Gaps = 32/256 (12%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID +G +   +    +  G+   +++   L  +           +   L       G   
Sbjct: 233 IDPNGTITTCNRAAGQITGHGETELLDRPLDQLFP--------SLAKQLTTGREAAGLEF 284

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                     +    +  P+ +   E  G            +     L  R + K + + 
Sbjct: 285 THRTPEGEERLLAADS-NPMPAPEDEPGGR--VITFRDVTEEKKKAQLLFRAE-KLAAIG 340

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           ++  G                          +          D++  +++  L    E +
Sbjct: 341 QLSAGV---------------AHELNTPLASILGYARLLLKDDNLAASQRERLEIIAEQT 385

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
                    +                 S+   +  +           D  +      ++ 
Sbjct: 386 RRSSTIIKALLSFARNSNHT-----GRSRHPCDLNTIVERAIPLLTTDLEKRRIELVLEL 440

Query: 329 CPIPFFVYSHGNLFYA 344
            P+P  +   G L   
Sbjct: 441 QPLPPVIADPGELEQV 456


>gi|261215049|ref|ZP_05929330.1| histidine kinase [Brucella abortus bv. 3 str. Tulya]
 gi|260916656|gb|EEX83517.1| histidine kinase [Brucella abortus bv. 3 str. Tulya]
          Length = 843

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 131/724 (18%), Positives = 263/724 (36%), Gaps = 49/724 (6%)

Query: 110 AFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN--TWYGKTTLWPIEGTNLYVPIDLAALP 167
              ++G                  G  L+ Q+        +    +     + ++     
Sbjct: 134 RADVVGQLPDACGAPQDRPAFLAFGRWLRPQSVTALERAISTLREQARAFDLTVETVNGS 193

Query: 168 IYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ 227
           +   +   SG  GF +    +     +A    L+ +   L +  +    +          
Sbjct: 194 LLDVHGRTSG--GFAVA-CFQSLQGVQAERASLEAQNRELADRIELMRRLLDRIEQPAWL 250

Query: 228 QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287
           +     +   N   +     A+    + +E   L  ++     E++ F    + +     
Sbjct: 251 RDGNGRIEWVNLAYAQAVDMANASQ-VISEGRELFGAQARQRLERDRFAEPVVQEQLTAV 309

Query: 288 YFGTLQ--------NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG 339
             G  +          S             ++            ET+D+      ++   
Sbjct: 310 VHGDRRVFDVIDVSAESGSVGLGFDLTEVQAVRDELSRTLKSHAETLDQLSTAVAIFDPE 369

Query: 340 -NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398
             L + N +F+ L     V  +E     + + D  +       +P      D    A  A
Sbjct: 370 MKLQFFNQAFVKLWGL-DVAWLETRPSNTLIFDRLRAEGKLPEQPEWRKWKDSLLSAYRA 428

Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI- 457
                    E    M  +P  +  +   N    G      +    K ++E     L  + 
Sbjct: 429 V--------EPEEHMWHLPDTRTMRVVANPHPQGGVTWFFENMTEKFELEGRYNTLIKVQ 480

Query: 458 ---LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYL 513
              L+  ++ +A+   +G +  +N + + L+  P E +      ++  +       +   
Sbjct: 481 GETLDHLAEAVAVFGSDGRLRLSNPSFAALWSLPSEMVREGTHISIIAKLCNQRGGDGLW 540

Query: 514 TEILSLDLRQTLEKITL---GSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570
            + +S       ++          +  +LS  ++           LT  D+++  + +  
Sbjct: 541 EDFVSTVTGFLDQRDGRMGQVELSDGAILSFAVVPLP---KGQTMLTFIDVTDTVRVERA 597

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           L    +  E     K+DF+  VS+E+R+PLT IIGF+E+++   FG L N R +EY ++I
Sbjct: 598 LKEKNEALEFADQIKNDFVQHVSYELRSPLTNIIGFTELLQTPAFGSL-NERQLEYLDHI 656

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
             S +++L IVND+LD++ +++G M L    VS+ EA+S A S V     +  I +    
Sbjct: 657 STSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEAISAAASRVSERLRDHNIGLDVDI 716

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
           A+++    AD   V+Q+  N+LSNA+++ P G  I++        +V+  V D G GM +
Sbjct: 717 ADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVLQVA-RDGADVVFAVHDDGHGMPS 775

Query: 751 YELEKAMKPFGQIPN-----SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
             L+   K F   PN        +          + K+ V+ + G+  I +   +GT + 
Sbjct: 776 EVLDTVFKRFQSYPNGGRRRGAGLGLA-------IVKSFVELHGGRVEIDTGEERGTTVI 828

Query: 806 IIFP 809
             FP
Sbjct: 829 CRFP 832


>gi|237723230|ref|ZP_04553711.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
 gi|293372791|ref|ZP_06619172.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
 gi|229447752|gb|EEO53543.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
 gi|292632300|gb|EFF50897.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
          Length = 660

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 103/517 (19%), Positives = 194/517 (37%), Gaps = 43/517 (8%)

Query: 318 GENLTPETVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
            +NL     +   +   +Y    L    N S L     K   DI      +    + ++ 
Sbjct: 10  ADNLLHNIFNDLSVGLELYDKDGLMIDVNYSRLRSMGIKDKKDILGYNLFNYTSFSDEIK 69

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           +        +    +       RL     +      +T           E      I  +
Sbjct: 70  EQIRKGE-TVRFMAKYDFDDLCRLFPTNLSGIKFFEITVSFVHNDKS--EITNYMVITQD 126

Query: 437 DVDTR--------------INKRKMEIEVMQL-------CSILEATSDGIAIINREGIIL 475
             +                 +K+++     ++         +L   + G+A I  + I+ 
Sbjct: 127 ITERVLWQNKYDNLYEEVVRSKKELLESEQRMIHLIRQNELVLNNINSGLAYIANDYIVQ 186

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
             N ++             +P  +     T    N  +         +++    L +   
Sbjct: 187 WENISLCSKSLSYEAYKKGEPCYLTAHNRTTPCENCVMQRARKSGQVESI----LFNLDN 242

Query: 536 EKLLSLRIIIK--KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
           + ++ +       +        + + D++E +    +L  A+  AE+    KS FLA +S
Sbjct: 243 KHVIEVFATPIFNEQGDVDGVVIRVDDVTERQHMIGELEKARSRAEQSDKLKSAFLANMS 302

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HEIRTPL AI+GFS+++              E+   I+ +  L+L ++ND+LD+SKIE+G
Sbjct: 303 HEIRTPLNAIVGFSDLLM----VTEDQEEKEEFIQIINANNELLLKLINDILDLSKIEAG 358

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713
            + L +E   L    +E  + +       ++ +          +  D   + QI  N ++
Sbjct: 359 SVELKYENFDLAVYFNELAASMHRRVVNPQVRLVPVNPYEACTVRLDKNRLAQILTNFVT 418

Query: 714 NAIHFTPSGGQIIISTTHTS-NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           NAI +T  G    I   +   +E + L VRDTG+G+   + +K    F ++        +
Sbjct: 419 NAIKYTSKG---TIEMGYEKIDENIRLYVRDTGIGIPEDKKDKVFHRFEKLD----EFAQ 471

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GTGLGL + KA+V+A  G+    S   KG+L   + P
Sbjct: 472 GTGLGLSICKAIVEACRGEIGFESEFDKGSLFWAVLP 508


>gi|229078308|ref|ZP_04210872.1| hypothetical protein bcere0023_9790 [Bacillus cereus Rock4-2]
 gi|228704983|gb|EEL57405.1| hypothetical protein bcere0023_9790 [Bacillus cereus Rock4-2]
          Length = 883

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 78/338 (23%), Positives = 149/338 (44%), Gaps = 18/338 (5%)

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            +D++++            +    +  +L      T E        + +   L++  ++L
Sbjct: 382 HQDLIQQTVDNLGLTIHSIMGRMRIQTLLHESQAMTEELQVQSEELQTQAEELQMQAEEL 441

Query: 549 PFSSCYSLTMHDISEWKQEK-----NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
             ++    +  + +E K        ++L        + S +KS+FLA +SHE+RTPL +I
Sbjct: 442 RTTNEQLESRTEEAEQKTADLQITKSELEEKASELLRSSKYKSEFLANMSHELRTPLNSI 501

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +  SE+++      L +    E A  I  SG  +L ++ND+LD+SK+E+GK+++ FE  +
Sbjct: 502 LLLSEMLRENHDNNLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDIIFEATN 560

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSG 722
           + +  +         A +K +      ++ IP +   D + ++QI  N+LSNA  FT  G
Sbjct: 561 ISDMAANMHQNFLHIAAQKNVEFTIEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKG 620

Query: 723 GQ------IIISTTHTS-----NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
                   I  S           + + + V+DTG+G+   + +   + F Q   +   + 
Sbjct: 621 SVSLHFDSIETSNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGATIRKY 680

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            GTGLGL + K       G   + S   +G+   +  P
Sbjct: 681 GGTGLGLSICKEFARLLGGWITLESNVGEGSTFTVYIP 718


>gi|121594294|ref|YP_986190.1| signal transduction histidine kinase NtrB [Acidovorax sp. JS42]
 gi|120606374|gb|ABM42114.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Acidovorax sp. JS42]
          Length = 720

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 103/587 (17%), Positives = 198/587 (33%), Gaps = 49/587 (8%)

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS-A 313
                 LL           +       Q         +        E  +       S A
Sbjct: 2   SRPDLSLLFPAAEPASSPPEQPERRGPQRASGDVAELIAQLHASQAELEAQNQVLRYSQA 61

Query: 314 YFDEGENLTPETVDKCPIPFFVYSH-GNLFYAN----PSFLLLTKYKSVDDI------EI 362
             +             P+   V      +  AN     SF      + +  +        
Sbjct: 62  AAESASERFEALFSSVPLSLMVVDEHDMVVQANSMAQRSFQPRETDRPLTALMLFVSDSH 121

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
           A  +    D  +         V+ + S+   I     +  I+   E    +T       +
Sbjct: 122 APRVREAFDQARAVGTAEATEVVFHISEGRHITGDLHIARIESRSEQDAPLTQFLCAVID 181

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
           Q P    +  ++    + +    ++     +L +++ +  D I  +++   I   N   +
Sbjct: 182 QGPLLAERQALQRSAQELQERNVQLHTSERRLEAVINSALDAIICVDQHERITVFNPTAA 241

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
            LF     D L  P + FL +    +    LT   +L             T   + L++ 
Sbjct: 242 MLFQCATSDALGSPLSRFLPEAQQVLAFAQLTTQAALG-------EMTALTASGRELAVE 294

Query: 543 IIIKKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEKE--SSHKSDFLARVSHEIRT 598
           I +     +     ++   D++  K+E+ + +  +    +             ++H+   
Sbjct: 295 ISVSFERHAEGETTTVFARDLTARKREEARRNALEGQLRESHKMQAVGTMAGGIAHDFNN 354

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
            L AI+G  E    +   P G P Y      ID++G    D+V  +L  S+ E       
Sbjct: 355 ILHAILGNVE--LAKADCPPGTPMYESLLE-IDKAGRRARDLVRQILTFSRNE----PPK 407

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718
              V+L E V +   L+++    + I +      ++P +LAD   V+Q  LN+ +NA+H 
Sbjct: 408 RAAVTLAEVVHDTERLLRVTLPPE-IELTVHVPPDLPPVLADATQVEQAVLNLCTNAVHA 466

Query: 719 -TPSGGQIII-------------STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764
                G+I +             S   ++ + V +RV D G GM      +  +PF    
Sbjct: 467 IGSRRGRIRVDAALIQPDQRMRESLGLSAGDYVAVRVHDNGPGMDAATQSRIFEPFFTTK 526

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
                 G+GTGLGL +   ++  + G   + S P +G+   + FP+ 
Sbjct: 527 P----VGQGTGLGLAVVHGVMRTHGGGVDVHSAPGEGSRFTLYFPVA 569



 Score = 41.6 bits (96), Expect = 0.60,   Method: Composition-based stats.
 Identities = 29/302 (9%), Positives = 67/302 (22%), Gaps = 14/302 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D H  +   +              +G  L         +    +           G+ T
Sbjct: 227 VDQHERITVFNPTAAMLFQCATSDALGSPLS----RFLPEAQQVLAFAQLTTQAALGEMT 282

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                G  L V I ++        R   G                 A    L+ +    H
Sbjct: 283 ALTASGRELAVEISVSF------ERHAEGETTTVFARDLTARKREEARRNALEGQLRESH 336

Query: 209 EIKKGHSSVEKEKYDIFSQQSP---PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
           +++   +      +D  +          L   +       Y +  +      +   L  +
Sbjct: 337 KMQAVGTMAGGIAHDFNNILHAILGNVELAKADCPPGTPMYESLLEIDKAGRRARDLVRQ 396

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
             +    E      +           L   +      L+    P L     +   +    
Sbjct: 397 ILTFSRNEPPKRAAVTLAEVVHDTERLLRVTLPPEIELTVHVPPDLPPVLADATQVEQAV 456

Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIE-IAGGLSTLLDAPKLSDNNAIKPV 384
           ++ C                 + L+    +  + +   AG    +         +A    
Sbjct: 457 LNLCTNAVHAIGSRRGRIRVDAALIQPDQRMRESLGLSAGDYVAVRVHDNGPGMDAATQS 516

Query: 385 ML 386
            +
Sbjct: 517 RI 518


>gi|291565788|dbj|BAI88060.1| cyanobacterial phytochrome [Arthrospira platensis NIES-39]
          Length = 846

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 75/253 (29%), Positives = 134/253 (52%), Gaps = 9/253 (3%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
            L    K AE  +  KS+FLA +SHEIRTP+ AI+GF +++K    G + + +   Y + 
Sbjct: 349 ALEEVAKRAEMANRSKSEFLANMSHEIRTPMNAILGFCDLLK----GLVEDEKQQSYLDA 404

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I   G  ++ +++D+LD+SKIE+GK+ L ++P++L   + E   +    A  K + ++ +
Sbjct: 405 IAAGGRALIGLIDDILDLSKIEAGKLQLEYQPMNLPILLQEIQQIFLPTAMAKGLSLQIN 464

Query: 690 FANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEE---VILRVRDT 744
              N+P+I+  D   ++QI  NI+ NAI FT  G   I +   +  ++    + + + DT
Sbjct: 465 IEPNVPKIIEFDEVRLRQILFNIVGNAIKFTEEGSVTISVRAQNCDHDSRVTLEIMIADT 524

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G++  + ++  + F Q       R  GTGLGL + + + +   GK  + S    G++ 
Sbjct: 525 GMGISPDQHQQIFEAFVQSEGQSNRRYGGTGLGLAITRRLTNLLGGKLTLESQLGLGSVF 584

Query: 805 EIIFPLYDTSHPH 817
              FP    +  H
Sbjct: 585 TFAFPDVQITQSH 597


>gi|5713126|gb|AAD47812.1| putative histidine protein kinase [Myxococcus xanthus]
          Length = 768

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 102/657 (15%), Positives = 203/657 (30%), Gaps = 58/657 (8%)

Query: 176 SGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR 235
           +G RGFG                    + +    +     S       + S  +P    +
Sbjct: 2   AGARGFG--------RASGGCYMTTLDELTTCAGLALAPPSSTGACLILISTTTPAAIGK 53

Query: 236 M------KNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYF 289
                  ++ +   ++     DD   + K+  +           D  + N          
Sbjct: 54  AYRLDQGEHIIGRGSDVTVRIDDHGVSRKHARVVRAGDGACHVTDLDSTNGTLLNGVPVS 113

Query: 290 GTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH--GNLFYANPS 347
                               S     ++ E    + +    +  + ++   G +   +  
Sbjct: 114 TAELMEGDRLQIGTVTVFRFSKREVLEQREEQLRQALTAARVGIWDWNAQSGRVT-WSEQ 172

Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
              L           A  LS ++    L   + +    L +  +  +        I+   
Sbjct: 173 VDRLLGLPVGKLSGRAMELSEVVHPADLPRVSEVLGAALEKKTQVDVEY-----RIEPQG 227

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
                ++       +         G   +    ++ ++++  +      I E+  DG+ I
Sbjct: 228 SGWRWISCKGDVLCDASGAPARVTGTVMDITARKLAEQELHRQS----LIFESIYDGVVI 283

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
            +  G I+  N +  ++FG    + L +     L  + P  +   +   L    R + E 
Sbjct: 284 TDLGGGIIDWNSSAERMFGRQKSEALGQTLFSVLHPDEPDRLTGLVLTALDKQGRWSGEL 343

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAEKESS 583
                  +        ++  L  S        +   D +E KQ +  L  A ++A   + 
Sbjct: 344 EF--KRHDGTTCWCESVVVPLRDSEGRAIANIMVHRDTTERKQLQAHLVVADRLASVGT- 400

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVI------KNQRFGPLGNPRYIEYANYIDRSGNLV 637
                 A V+HEI  PL  ++    +I         +          +           +
Sbjct: 401 ----LGAGVAHEINNPLAYMLVNLHLIREGLERLESQAPAAPVASLQQLVRETAEGAERI 456

Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697
             IV DL   ++   G+      PV +  AV  A  +        R  + T F   +  +
Sbjct: 457 ATIVRDLKVFAR---GEQETRLMPVDVRRAVELACKMADNVI-RHRARLVTEFEP-VAPV 511

Query: 698 LADLRSVKQIALNILSNAIHFTPSGG------QIIISTTHTSNEEVILRVRDTGVGMTNY 751
            A    + Q+ LN+L NA    P  G      +I +       + V++ VRDTG+GM   
Sbjct: 512 EASESRLCQVFLNLLLNAAQAIPEEGTPGVEHEIRVVIRAGEKDRVVVEVRDTGMGMGQE 571

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            L +   PF          G GTGLGL +   ++++  G     S P +G+   ++ 
Sbjct: 572 VLGRIFDPFFTTKP----VGVGTGLGLSICHGIIESMGGSIQAESEPGRGSTFRVVL 624



 Score = 58.1 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 26/241 (10%), Positives = 57/241 (23%), Gaps = 18/241 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147
            D  G + + +    +  G    + +G  L  V      D     +   L +Q  W G+ 
Sbjct: 284 TDLGGGIIDWNSSAERMFGRQKSEALGQTLFSVLHPDEPDRLTGLVLTALDKQGRWSGEL 343

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                +GT      +   +P+              +          +A     D+  S  
Sbjct: 344 EFKRHDGTT--CWCESVVVPLRDSEGR--AIANIMVHRDTTERKQLQAHLVVADRLASVG 399

Query: 208 HEIKKGHSSVE-------------KEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254
                    +              +E  +    Q+P   +    ++   T   A +   +
Sbjct: 400 TLGAGVAHEINNPLAYMLVNLHLIREGLERLESQAPAAPVASLQQLVRETAEGAERIATI 459

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
             +       E+ +     D                  +      FE ++          
Sbjct: 460 VRDLKVFARGEQETRLMPVDVRRAVELACKMADNVIRHRARLVTEFEPVAPVEASESRLC 519

Query: 315 F 315
            
Sbjct: 520 Q 520


>gi|328873441|gb|EGG21808.1| histidine kinase [Dictyostelium fasciculatum]
          Length = 1361

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 86/266 (32%), Positives = 129/266 (48%), Gaps = 11/266 (4%)

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
           +    I   KQ   K + AK+ AE  S  KSDF+A +SHEIRTP+  IIG    + +   
Sbjct: 709 IINEMIYNLKQTTIKNTLAKEAAEAASRAKSDFMANMSHEIRTPMNGIIG----MTDLTL 764

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
                    EY   +  S   +L I+ND+LD SKIE+G++ L     SL   + + +  +
Sbjct: 765 DTDLTAEQREYLTMVQSSAGSLLTIINDILDFSKIEAGRLELDQTEFSLRNHLYDTLKTM 824

Query: 676 QLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTS 733
              A++K + +    A ++  IL  D   ++QI  N++ NAI FT  G  I+ +      
Sbjct: 825 AWRAHQKGLELVCDIAPDVADILVGDPGRLRQIVTNLVGNAIKFTAEGEVILAVDIDERR 884

Query: 734 NEEVI---LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
           +  VI     V DTG+G+   +L    + F Q   S   +  GTGLGL ++  MV+   G
Sbjct: 885 SNNVIVIHFTVTDTGIGIPAEKLHLIFEAFSQADGSITRKYGGTGLGLTISTRMVELMGG 944

Query: 791 KFYIFSTPAKGTLIEII--FPLYDTS 814
           K    STP  G+  E    FP+ D +
Sbjct: 945 KLRAESTPGLGSKFEFTAVFPISDAN 970


>gi|312890095|ref|ZP_07749639.1| integral membrane sensor hybrid histidine kinase [Mucilaginibacter
           paludis DSM 18603]
 gi|311297627|gb|EFQ74752.1| integral membrane sensor hybrid histidine kinase [Mucilaginibacter
           paludis DSM 18603]
          Length = 936

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 75/251 (29%), Positives = 129/251 (51%), Gaps = 9/251 (3%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E   ++ +   A++ AEK +  KS FLA +SHEIRTP+  ++G + +++        N  
Sbjct: 397 ELLSQRQQEQAAREDAEKANQAKSVFLATMSHEIRTPMNGVLGMASLLEETTL----NNE 452

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             EY + I  SG  +L +++D+LD SKIESGK++L     +L + + E + +        
Sbjct: 453 QREYVSTIKNSGETLLSVISDVLDFSKIESGKLDLDPHQFNLRQCIEEVMDIFSGKVARI 512

Query: 683 RILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNE---EV 737
            + +       +P  I+AD   +KQ+ +N++ NAI FT  G   + +S    +++   E+
Sbjct: 513 GLDLVYQIGYEVPAHIIADSLRLKQVLINLVGNAIKFTSKGEVFLGVSLLSRTDDHSLEL 572

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
              V+DTG+G+   +L +  K F QI +S   R  G+GLGL + + +V    G+  + S 
Sbjct: 573 AFEVKDTGIGIPRDKLPRLFKAFSQIDSSTTRRYGGSGLGLAICERLVHLMEGQITVESQ 632

Query: 798 PAKGTLIEIIF 808
              GT      
Sbjct: 633 LDLGTTFRFSI 643


>gi|326316918|ref|YP_004234590.1| PAS/PAC sensor hybrid histidine kinase [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323373754|gb|ADX46023.1| PAS/PAC sensor hybrid histidine kinase [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 750

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 97/600 (16%), Positives = 190/600 (31%), Gaps = 55/600 (9%)

Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302
           L       D    +   P  T+ E ++P  E         + +      +        E 
Sbjct: 9   LLPPDPEDDRGAASGGEPAGTAGEPAVPSGEGGGHRRQPPHPEGPVAALIAELRAYQAEL 68

Query: 303 LSHRNHPSLSA-YFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDD- 359
                    S    +             P+   V      +  AN       +    D  
Sbjct: 69  EVQNKVLRYSQTAAESASERFETLFASVPLALMVLDEHDMVVQANSMAHRWFQPTESDRP 128

Query: 360 ---------IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR----TCIAASARLHTIQWN 406
                       A  +    +  +   +     V+    D     T     AR+   Q +
Sbjct: 129 LTSLMPFVSAADAARVRATFEQARDHGHGEASEVLFPIGDGDAGITGDLYIARIEAPQAD 188

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
                          +Q P    +  ++      +    ++     +L +++ +  D I 
Sbjct: 189 GAPEQWQFLCAVV--DQGPLVAERRALQHSATALQERNAQLYASERRLEAVINSALDAII 246

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
            +++   I   N   + LF     D L  P   FL     ++    L     L       
Sbjct: 247 CVDQNQRITVFNPTAAALFQCATADALGSPLDRFLPDAVQALAFAQLATQAVLG------ 300

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM--HDISEWKQEKNKLSHAKKIAEKE--S 582
              +  T   K L++ + +     +   + T+   D++  K+ +   +  +    +    
Sbjct: 301 -EMVALTASGKELAVEVSVSFERHAEGETTTVFARDLTGRKKAEAHRNELEAQLRESHKM 359

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
                    ++H+    L+AI+G  E+ K            +E    I+++G    D+V 
Sbjct: 360 QAVGTMAGGIAHDFNNILSAILGNVELAKADCAAGSP---VLESLREIEKAGRRARDLVR 416

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702
            +L  S+ E          V + EA+ +   L+++      I +R     ++P +LAD  
Sbjct: 417 QILTFSRNE----PPRRTAVPVAEAIHDTERLLRVTLPPA-IELRLHLDRDLPALLADAT 471

Query: 703 SVKQIALNILSNAIHF-TPSGGQIII-------------STTHTSNEEVILRVRDTGVGM 748
            V+Q  LN+ +NAIH    + G + +                    E V + V D G G+
Sbjct: 472 QVEQALLNLCTNAIHALGDARGTVCVEASAMQPDHRLCERLALPPGEYVAISVVDNGPGI 531

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
                 +  +PF          G+GTGLGL +   ++  + G   + S P +G+   + F
Sbjct: 532 DAATQLRIFEPFFTTKP----VGQGTGLGLAVVHGVMRTHGGAVDVQSAPGEGSRFTLYF 587



 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/280 (8%), Positives = 64/280 (22%), Gaps = 13/280 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D +  +   +              +G  L    D    D    +           G+  
Sbjct: 248 VDQNQRITVFNPTAAALFQCATADALGSPL----DRFLPDAVQALAFAQLATQAVLGEMV 303

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                G  L V + ++        R   G                 A    L+ +    H
Sbjct: 304 ALTASGKELAVEVSVSF------ERHAEGETTTVFARDLTGRKKAEAHRNELEAQLRESH 357

Query: 209 EIKKGHSSVEKEKYDIFSQQSP---PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
           +++   +      +D  +  S       L   +  +      + ++      +   L  +
Sbjct: 358 KMQAVGTMAGGIAHDFNNILSAILGNVELAKADCAAGSPVLESLREIEKAGRRARDLVRQ 417

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
             +    E      +           L   +      L       L A   +   +    
Sbjct: 418 ILTFSRNEPPRRTAVPVAEAIHDTERLLRVTLPPAIELRLHLDRDLPALLADATQVEQAL 477

Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365
           ++ C                 +  +   ++  + + +  G
Sbjct: 478 LNLCTNAIHALGDARGTVCVEASAMQPDHRLCERLALPPG 517


>gi|91783499|ref|YP_558705.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia xenovorans
           LB400]
 gi|91687453|gb|ABE30653.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia xenovorans
           LB400]
          Length = 657

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 91/499 (18%), Positives = 178/499 (35%), Gaps = 26/499 (5%)

Query: 331 IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN-AIKPVMLYRS 389
                 +  +L  A     +     +  +    GG   L+   +LS     +      R+
Sbjct: 20  EGILRLARKSLERAGCRVAICAGVDAARERLARGGPDLLVLDYQLSGPETGLDFFRHLRA 79

Query: 390 DRTCIA------ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
           +   I        +     I+  R     +     +  +  PE + +   +         
Sbjct: 80  EGVRIPAILVTGFTDESRVIEALRAGVSDVVPKSGDYLDYLPEAVERVLSQVRLQRASDE 139

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
              +        ++ EA    +   N  G     ++      G          +   +  
Sbjct: 140 ALLLRDREQHYRTLSEALPHLVMTCNAAGDCDFLSKQWYDYTGLAEGSSYGLAWLDAVHP 199

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMH 559
           +   V+     + +S                + +     + +  +  +      +  +  
Sbjct: 200 DDREVIRRSWLKAVS-GNAGDYRHELRIRRHDGEYRWFDVRVVAMRDAEGNISKWFGSCT 258

Query: 560 DISEWKQEKNKLSH-------AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
           DI   ++   +          A++IAE+ +  K  FLA +SHE+RTPLT ++  + V++ 
Sbjct: 259 DIHSQREAIEERERLLASEQAARQIAEEANRAKDRFLAMLSHELRTPLTPVLAGASVLE- 317

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
               P    +       I R+  L   +++DLLD++++ +GK+ L  E V + + +   +
Sbjct: 318 --MIPELPDQARASVRMIRRNVELEARLIDDLLDLTRVANGKLRLSLETVDVHDVMDSVL 375

Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
            L +     K+  +          +LAD   ++Q+  N++ NA  FTP GG I + T   
Sbjct: 376 ELFRSEIQVKQQDVHVHKNARHHYVLADRARLQQMLWNLIRNAAKFTPDGGHIYVRTR-D 434

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
               V + V DTG+G+   ++ K    F Q   +   +  G GLGL + KA+ D + G  
Sbjct: 435 ERMHVQIAVEDTGIGIEPDQIGKLFNAFEQGNQNMTRQFGGLGLGLAITKALTDVHGGTV 494

Query: 793 YIFSTPAK--GTLIEIIFP 809
              S P    G    I  P
Sbjct: 495 TAQS-PGAHCGATFTITLP 512



 Score = 48.1 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/223 (8%), Positives = 55/223 (24%), Gaps = 8/223 (3%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID--PNNHIGDLLKRQNTWYGKT 147
           +A G    +S++     G       G+   D       +    + +  +      +  + 
Sbjct: 165 NAAGDCDFLSKQWYDYTGLAEGSSYGLAWLDAVHPDDREVIRRSWLKAVSGNAGDYRHEL 224

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
            +   +G   Y   D+  + +       S  + FG         +     +RL       
Sbjct: 225 RIRRHDGE--YRWFDVRVVAMRDAEGNIS--KWFGSCTDIHSQREAIEERERLLASEQAA 280

Query: 208 HEIKKGHSSVEKE--KYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
            +I +  +  +           ++P   +     V  +      +           +  E
Sbjct: 281 RQIAEEANRAKDRFLAMLSHELRTPLTPVLAGASVLEMIPELPDQARASVRMIRRNVELE 340

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
              + +  D   +   +         + +      E       
Sbjct: 341 ARLIDDLLDLTRVANGKLRLSLETVDVHDVMDSVLELFRSEIQ 383


>gi|46578430|ref|YP_009238.1| sensory box histidine kinase [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120603988|ref|YP_968388.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           vulgaris DP4]
 gi|46447841|gb|AAS94497.1| sensory box histidine kinase [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120564217|gb|ABM29961.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           vulgaris DP4]
 gi|311232361|gb|ADP85215.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           vulgaris RCH1]
          Length = 602

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 94/541 (17%), Positives = 192/541 (35%), Gaps = 55/541 (10%)

Query: 273 EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP 332
           E  H ++ +    +    +   +  E     + R     +A   EG    P  V +  +P
Sbjct: 102 ERVHLMDDHGGRPEVVAASRGGSGMEVRYSTTLRKDLVYAALRVEGIAGLPAGVIRVALP 161

Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
                   +       L    +     +  +GGL  L+  P L    ++           
Sbjct: 162 VSEVR-DRIDSMETGLLWAFIFS----LLASGGLGFLVTRPFLGGIESMARAAQAIGQGD 216

Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
                                           P     NG+     +  +    +E +  
Sbjct: 217 YGR------------------RIRDIPGRELRPLAHAINGMAHNI-ERHLAV--LEEQKG 255

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
           +L ++     +G+ +++ EG I + NRA++ +F   V  I R P    ++      ++  
Sbjct: 256 RLEAVFNGMREGVMVLDAEGRITTINRALTTMFEGIVSKIGRTPLEATMKPELQRAVDDL 315

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572
             +  +      LE        + +   + ++        C  L  HD+SE ++ +    
Sbjct: 316 RAKDTTEGRAIMLEL------SDGRAFEVNLVPFFDEAGRCVVLVFHDVSEREKLE---- 365

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
                       + DF+A VSHE++TPLT+I G++E +      P    +   +   I +
Sbjct: 366 ----------RIRRDFVANVSHELKTPLTSIKGYAETLLESP--PASCEQAGAFMRTILK 413

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
           + N +  +VN LL +++ E          V   E + + +   Q  A  K I +      
Sbjct: 414 NANHMTKMVNSLLVLARSEHKGEKRVLAEVDAAEVLRQTLREFQPVARRKAIELVCEVEG 473

Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752
            +  ++AD   + ++  N++ NA+ ++P G ++ +S             RD G G+    
Sbjct: 474 AV-TVMADRDGLGEVFRNLMDNAMKYSPEGTRVSVS-ARPGAGVATFCFRDEGPGIPENS 531

Query: 753 LEKAMKPFGQIPN-SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA----KGTLIEII 807
            E+  + F +I       +    GLGL + + +V ++ G+ ++ S       +G    I 
Sbjct: 532 KERIFERFYRIEREGDTSKEGSAGLGLAICRRIVRSHGGEIWVESPLDPATRRGAAFFIT 591

Query: 808 F 808
            
Sbjct: 592 L 592



 Score = 48.1 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 35/340 (10%), Positives = 70/340 (20%), Gaps = 20/340 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +DA G +  I+  L         K IG    + +    +     + DL  +  T      
Sbjct: 271 LDAEGRITTINRALTTMFEGIVSK-IGRTPLEATMKPELQ--RAVDDLRAKDTTEGRAIM 327

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           L   +G       ++  +P +             + H          + +      SH  
Sbjct: 328 LELSDGRAF----EVNLVPFFDEAGRCV----VLVFHDVSEREKLERIRRDFVANVSHEL 379

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           +          E        S          +     +     + L          E+  
Sbjct: 380 KTPLTSIKGYAETLLESPPASCEQAGAFMRTILKNANHMTKMVNSLLVLARSEHKGEKRV 439

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
           L E +    +       +              E              +   NL    +  
Sbjct: 440 LAEVDAAEVLRQTLREFQPVARRKAIELVCEVEGAVTVMADR-DGLGEVFRNLMDNAMKY 498

Query: 329 CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV---- 384
            P    V           +F    +   + +              +  D +         
Sbjct: 499 SPEGTRVSVSARPGAGVATFCFRDEGPGIPENSKERIFERFYRIEREGDTSKEGSAGLGL 558

Query: 385 ----MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
                + RS    I   + L                P  +
Sbjct: 559 AICRRIVRSHGGEIWVESPLDPATRRGAAFFITLNTPRAR 598


>gi|15807408|ref|NP_296140.1| sensory box sensor histidine kinase [Deinococcus radiodurans R1]
 gi|6460235|gb|AAF11962.1|AE002072_4 sensory box sensor histidine kinase [Deinococcus radiodurans R1]
          Length = 744

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 98/696 (14%), Positives = 210/696 (30%), Gaps = 60/696 (8%)

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG--KRLDKKFSHL 207
            P EG    V + L   P  +   E           +             +R +   +  
Sbjct: 72  LPAEGG---VWLRLRRAPAATAAEEQLDLLFTVFERLGTGLVLQDETLNVRRANGSAART 128

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
             + +     +      +  + P  H     +  +L    + +D+        LL     
Sbjct: 129 LGLSREQLRGQGSVPGNWELRRPGGHRLPPEETPTLRALRSGQDETDMR--VGLLRPGAP 186

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
                                   +  +               +       E      V 
Sbjct: 187 HWRWLSVGALARRPADPWPPGVLLVLRDE---------TAEQRVREELRRSEQRYRSLVQ 237

Query: 328 KCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
                 +     G    + P +   T     + +                D+        
Sbjct: 238 ASAQIVWSASHDGEFRVSQPQWEAFTGQPPREHLGGG------WLQAVHPDDREATLAAW 291

Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
            ++     A   R    + +      +                  G   +       +R 
Sbjct: 292 DQAIERNEAYEVRHRLRRHDGVYVPMLARAVQVGGEAGQTPPEWIGTHSDVTLQDAAERA 351

Query: 447 MEIEVMQLCS------------------ILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
           ++     L                    +L +  +GI  ++R+G     N A S+L GY 
Sbjct: 352 LQTLNADLQLQVAEQTQEIGQVSRFMALLLTSAGEGIFGLDRDGNNTFVNPAASELLGYS 411

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLT-----EILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           V ++L +P    L  +      H L+     + L    ++ +E       ++   + +  
Sbjct: 412 VSELLGQPSHAKLHHHHADGTPHLLSECPISQTLRDGQQRRVEADVFW-HRDGHPVPVAY 470

Query: 544 IIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
           ++              +   D+SE  +   +L  A    +  ++    F    SH+++ P
Sbjct: 471 VVTPTLDERGEVEGAVVMFQDVSEQVRAHAELEDALHHLQLTNADLEQFAYVASHDLQEP 530

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +  ++E++  +  G L + R  +Y  ++  +   +  ++ DLL  S++  G+  L  
Sbjct: 531 LRTLGSYAELLARRYQGQL-DARADQYIAFMLDAVERMRSLIQDLLAFSRV--GRNELEL 587

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719
             V+LD  + +    V+         +           LA    + Q+  N++SN + F 
Sbjct: 588 SEVTLDSLMQQTARNVEAALESSGGALTWDTPGTA---LAQPSLLVQLLTNLVSNGLKFA 644

Query: 720 PSGGQIIISTTHT-SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
             G    +    +    E  + VRD G+G+ +   E+    F ++    +    G G+GL
Sbjct: 645 RPGVPPAVEVVSSIVGNEQRIEVRDNGIGIGSEYHERVFTIFQRLH--LREDYPGNGIGL 702

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
            +A+ +V A+ G   + S P +G+   I  P    +
Sbjct: 703 AIARKIVAAHGGSLTLKSQPGEGSTFIISLPADHAA 738



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 29/254 (11%), Positives = 63/254 (24%), Gaps = 17/254 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH------IGDLLKR 139
            + +D  G    ++    + +G    +++G          H D   H      I   L+ 
Sbjct: 388 IFGLDRDGNNTFVNPAASELLGYSVSELLGQPSHAKLHHHHADGTPHLLSECPISQTLRD 447

Query: 140 QNTWYGK-TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
                 +    W  +G    VP+     P      E  G     +           A  +
Sbjct: 448 GQQRRVEADVFWHRDGHP--VPVAYVVTPTLDERGEVEGA--VVMFQDVSEQVRAHAELE 503

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYD-----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253
                    +   +  + V           + S              +   +Y A   D 
Sbjct: 504 DALHHLQLTNADLEQFAYVASHDLQEPLRTLGSYAELLARRYQGQLDARADQYIAFMLDA 563

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT-LQNNSKESFEYLSHRNHPSLS 312
           ++  +  +      S   + +     +   +  Q     ++   + S   L+     +  
Sbjct: 564 VERMRSLIQDLLAFSRVGRNELELSEVTLDSLMQQTARNVEAALESSGGALTWDTPGTAL 623

Query: 313 AYFDEGENLTPETV 326
           A       L    V
Sbjct: 624 AQPSLLVQLLTNLV 637



 Score = 47.3 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 29/383 (7%), Positives = 89/383 (23%), Gaps = 27/383 (7%)

Query: 83  VRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQN 141
            +  W+    G  +    +     G    + +G            +         ++R  
Sbjct: 240 AQIVWSASHDGEFRVSQPQWEAFTGQPPREHLGGGWLQAVHPDDREATLAAWDQAIERNE 299

Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL- 200
            +  +  L   +G  +YVP+   A+ +     + +     G      + +      + L 
Sbjct: 300 AYEVRHRLRRHDG--VYVPMLARAVQVGGEAGQ-TPPEWIGTHSDVTLQDAAERALQTLN 356

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQ-----------SPPPHLRMKNKVSSLTEYYAH 249
                 + E  +    V +    + +             +        +++   +     
Sbjct: 357 ADLQLQVAEQTQEIGQVSRFMALLLTSAGEGIFGLDRDGNNTFVNPAASELLGYSVSELL 416

Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
                    +         L E     T+   Q  + +       +              
Sbjct: 417 GQPSHAKLHHHHADGTPHLLSECPISQTLRDGQQRRVEADVFWHRDGHPVPVAYVVTPTL 476

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
                 +    +  +  ++      +    +      + L    Y +  D++        
Sbjct: 477 DERGEVEGAVVMFQDVSEQVRAHAELEDALHHLQLTNADLEQFAYVASHDLQEP------ 530

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
                L    +   ++  R      A + +      +    +          ++   N  
Sbjct: 531 -----LRTLGSYAELLARRYQGQLDARADQYIAFMLDAVERMRSLIQDLLAFSRVGRNEL 585

Query: 430 QNGIEPEDVDTRINKRKMEIEVM 452
           +      D   +   R +E  + 
Sbjct: 586 ELSEVTLDSLMQQTARNVEAALE 608


>gi|228926141|ref|ZP_04089217.1| hypothetical protein bthur0010_8620 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228833506|gb|EEM79067.1| hypothetical protein bthur0010_8620 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 896

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 79/338 (23%), Positives = 147/338 (43%), Gaps = 18/338 (5%)

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            +D++ +            +    +  +L      T E        + +   L++  ++L
Sbjct: 395 HQDLIHQTVDNLGLTIHSIMGRMRIQTLLHESQAMTEELQVQSEELQTQAEELQMQAEEL 454

Query: 549 PFSSCYSLTMHDISEWKQEKN-----KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
             ++    +  + +E K         +L        + S +KS+FLA +SHE+RTPL +I
Sbjct: 455 RTTNEQLESRTEEAEQKTADLQVTKLELEEKASELLRSSKYKSEFLANMSHELRTPLNSI 514

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +  SE++K      L +    E A  I  SG  +L ++ND+LD+SK+E+GK+++ FE  +
Sbjct: 515 LLLSEMLKENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIFEATN 573

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSG 722
           + +  +         A +K +      ++ IP +   D + ++QI  N+LSNA  FT  G
Sbjct: 574 ISDMAASMQQNFLHIAAQKNVEFTVEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKG 633

Query: 723 GQ------IIISTTHTS-----NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
                   I  S           + + + V+DTG+G+   + +   + F Q   +   + 
Sbjct: 634 SVSLHFDSIETSNLSDDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGATIRKY 693

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            GTGLGL + K       G   + S   +G+   +  P
Sbjct: 694 GGTGLGLSICKEFARLLGGWITLQSHVGEGSTFTVYIP 731


>gi|229042838|ref|ZP_04190574.1| hypothetical protein bcere0027_8970 [Bacillus cereus AH676]
 gi|228726498|gb|EEL77719.1| hypothetical protein bcere0027_8970 [Bacillus cereus AH676]
          Length = 883

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 78/341 (22%), Positives = 148/341 (43%), Gaps = 24/341 (7%)

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            +D++ +            +    +  +L      T E        + +   L++  ++L
Sbjct: 382 HQDLIHQTVDNLGLTIHSIMGRMRIQTLLHESQAMTEELQVQSEELQTQAEELQMQAEEL 441

Query: 549 PFSSCYSLTMHDISEWKQEKN-----KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
             ++    +  + +E K         +L        + S +KS+FLA +SHE+RTPL +I
Sbjct: 442 RTTNEQLESRTEEAEQKTADLQITKLELEEKASELLRSSKYKSEFLANMSHELRTPLNSI 501

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +  SE+++      L +    E A  I  SG  +L ++ND+LD+SK+E+GK+++ FE  +
Sbjct: 502 LLLSEMLRENHDNNLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDIIFEATN 560

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSG 722
           + +  +         A +K +      ++ IP +   D + ++QI  N+LSNA  FT  G
Sbjct: 561 ISDMAANMHQNFLHIAAQKNVEFTIEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKG 620

Query: 723 GQIIISTTHTS--------------NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
               +S    S               + + + V+DTG+G+   + +   + F Q   +  
Sbjct: 621 S---VSLHFDSIETTNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGATI 677

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            +  GTGLGL + K       G   + S   +G+   +  P
Sbjct: 678 RKYGGTGLGLSICKEFARLLGGWITLESNVGEGSTFTVYIP 718


>gi|108763135|ref|YP_629192.1| sensory box histidine kinase/response regulator [Myxococcus xanthus
           DK 1622]
 gi|108467015|gb|ABF92200.1| sensory box histidine kinase/response regulator [Myxococcus xanthus
           DK 1622]
          Length = 777

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 102/665 (15%), Positives = 205/665 (30%), Gaps = 58/665 (8%)

Query: 168 IYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ 227
           + +     +G RGFG                    + +    +     S       + S 
Sbjct: 3   LRTERAGMAGARGFG--------RASGGCYMTTLDELTTCAGLALAPPSSTGACLILIST 54

Query: 228 QSPPPHLRM------KNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLN 281
            +P    +       ++ +   ++     DD   + K+  +           D  + N  
Sbjct: 55  TTPAAIGKAYRLDQGEHIIGRGSDVTVRIDDHGVSRKHARVVRAGDGACHVTDLDSTNGT 114

Query: 282 QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH--G 339
                                       S     ++ E    + +    +  + ++   G
Sbjct: 115 LLNGVPVSTAELMEGDRLQIGTVTVFRFSKREVLEQREEQLRQALTAARVGIWDWNAQSG 174

Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399
            +   +     L           A  LS ++    L   + +    L +  +  +     
Sbjct: 175 RVT-WSEQVDRLLGLPVGKLSGRAMELSEVVHPADLPRVSEVLGAALEKKTQVDVEY--- 230

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459
              I+        ++       +         G   +    ++ ++++  +      I E
Sbjct: 231 --RIEPQGSGWRWISCKGDVLCDASGAPARVTGTVMDITARKLAEQELHRQS----LIFE 284

Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL 519
           +  DG+ I +  G I+  N +  ++FG    + L +     L  + P  +   +   L  
Sbjct: 285 SIYDGVVITDLGGGIIDWNSSAERMFGRQKSEALGQTLFSVLHPDEPDRLTGLVLTALDK 344

Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHAK 575
             R + E        +        ++  L  S        +   D +E KQ +  L  A 
Sbjct: 345 QGRWSGELEF--KRHDGTTCWCESVVVPLRDSEGRAIANIMVHRDTTERKQLQAHLVVAD 402

Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI------KNQRFGPLGNPRYIEYANY 629
           ++A   +       A V+HEI  PL  ++    +I         +          +    
Sbjct: 403 RLASVGT-----LGAGVAHEINNPLAYMLVNLHLIREGLERLESQAPAAPVASLQQLVRE 457

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
                  +  IV DL   ++   G+      PV +  AV  A  +        R  + T 
Sbjct: 458 TAEGAERIATIVRDLKVFAR---GEQETRLMPVDVRRAVELACKMADNVI-RHRARLVTE 513

Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGG------QIIISTTHTSNEEVILRVRD 743
           F   +  + A    + Q+ LN+L NA    P  G      +I +       + V++ VRD
Sbjct: 514 FEP-VAPVEASESRLCQVFLNLLLNAAQAIPEEGTPGVEHEIRVVIRAGEKDRVVVEVRD 572

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TG+GM    L +   PF          G GTGLGL +   ++++  G     S P +G+ 
Sbjct: 573 TGMGMGQEVLGRIFDPFFTTKP----VGVGTGLGLSICHGIIESMGGSIQAESEPGRGST 628

Query: 804 IEIIF 808
             ++ 
Sbjct: 629 FRVVL 633



 Score = 58.1 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 26/241 (10%), Positives = 57/241 (23%), Gaps = 18/241 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147
            D  G + + +    +  G    + +G  L  V      D     +   L +Q  W G+ 
Sbjct: 293 TDLGGGIIDWNSSAERMFGRQKSEALGQTLFSVLHPDEPDRLTGLVLTALDKQGRWSGEL 352

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                +GT      +   +P+              +          +A     D+  S  
Sbjct: 353 EFKRHDGTT--CWCESVVVPLRDSEGR--AIANIMVHRDTTERKQLQAHLVVADRLASVG 408

Query: 208 HEIKKGHSSVE-------------KEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254
                    +              +E  +    Q+P   +    ++   T   A +   +
Sbjct: 409 TLGAGVAHEINNPLAYMLVNLHLIREGLERLESQAPAAPVASLQQLVRETAEGAERIATI 468

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
             +       E+ +     D                  +      FE ++          
Sbjct: 469 VRDLKVFARGEQETRLMPVDVRRAVELACKMADNVIRHRARLVTEFEPVAPVEASESRLC 528

Query: 315 F 315
            
Sbjct: 529 Q 529


>gi|312972515|ref|ZP_07786689.1| aerobic respiration control sensor protein arcB [Escherichia coli
           1827-70]
 gi|310334892|gb|EFQ01097.1| aerobic respiration control sensor protein arcB [Escherichia coli
           1827-70]
 gi|332754418|gb|EGJ84784.1| aerobic respiration control sensor protein arcB [Shigella flexneri
           2747-71]
          Length = 595

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 71/334 (21%), Positives = 146/334 (43%), Gaps = 20/334 (5%)

Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
           +  L G   + ++             + +     ++   ++  T E+        +    
Sbjct: 1   MELLTGKSEKQLVHLKPADVYSPEAAAKVIETDEKVFRHNVSLTYEQWLDYPDGRKACFE 60

Query: 541 LRIIIK--KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
           +R +    ++           DI+E K+        +   E+ S  K+ F++ +SHE+RT
Sbjct: 61  IRKVPYYDRVGKRHGLMGFGRDITERKR-------YQDALERASRDKTTFISTISHELRT 113

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
           PL  I+G S ++ +            +Y   I  S   + +I ND++D+ K+E  K+ L 
Sbjct: 114 PLNGIVGLSRILLDTELTA----EQEKYLKTIHVSAVTLGNIFNDIIDMDKMERRKVQLD 169

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP---RILADLRSVKQIALNILSNA 715
            +PV     +++  +L  L A +K   +R +    +P   +++ D   ++QI  N++SNA
Sbjct: 170 NQPVDFTSFLADLENLSALQAQQKG--LRFNLEPTLPLPHQVITDGTRLRQILWNLISNA 227

Query: 716 IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGT 774
           + FT  G Q+ +   +   + +   V D+G+G+   EL+K    + Q+ +S   +   GT
Sbjct: 228 VKFTQQG-QVTVRVRYDEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPATGT 286

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           G+GL +++ +     G   + S   KG+   +  
Sbjct: 287 GIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTI 320


>gi|306845191|ref|ZP_07477767.1| integral membrane sensor signal transduction histidine kinase
           [Brucella sp. BO1]
 gi|306274350|gb|EFM56157.1| integral membrane sensor signal transduction histidine kinase
           [Brucella sp. BO1]
          Length = 609

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 92/349 (26%), Positives = 168/349 (48%), Gaps = 4/349 (1%)

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
             ++ EGI+ S +   +KL G   + +        +           L ++ +    + +
Sbjct: 211 FGLDIEGIVSSVDGETAKLLGVQPKMLEGTALIDRVHVADRVQYLSLLADLRAGMATRKV 270

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
           +            +      +        +L    +   ++  ++++  K   E E   K
Sbjct: 271 DVRLRSIE-NGNPVFRAYRFEGAGSDRAITLIGRSLEGEQKLLDEIAMLKAELESERIGK 329

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
              LA VSHE+RTPL +IIGFS+++ ++  G L + R  EYA  I +SG+ +L++VN +L
Sbjct: 330 GRLLATVSHELRTPLNSIIGFSDMLTHEIGGKLASDRQREYAGLIHQSGHYLLELVNAVL 389

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
           D S++E+G  ++  +     +AV    +++   A +K +       N +  ++AD R+V+
Sbjct: 390 DNSRLETGTYSIAPQSFVFRDAVEMCTAVMLPQAEKKGVAFCHRVGNGVGELVADRRAVQ 449

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNE---EVILRVRDTGVGMTNYELEKAMKPFGQ 762
           QI LN+ +NA+ FT SGG + I       +    +   V DTG+G+   +L++   PF +
Sbjct: 450 QILLNLATNAVKFTQSGGCVTIDAARVMADGCPMLEFSVSDTGIGIEPEDLQRIGTPFVR 509

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
             NS     EG+GLGL + K +V+ + G   + S P +GT++ I  PL 
Sbjct: 510 ADNSYTQAQEGSGLGLSVVKGLVELHQGSMQLKSRPGEGTVVMIRLPLA 558


>gi|162451335|ref|YP_001613702.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
 gi|161161917|emb|CAN93222.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
          Length = 517

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 84/365 (23%), Positives = 159/365 (43%), Gaps = 12/365 (3%)

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
           +   + QL  + +  +  +   +R+   L  +   +     P  +I+ +     L     
Sbjct: 15  LRAALEQLRMVTDRMAAAVTYCSRDLRYLWVSPEYAAWIARPAAEIVGQRIVEVLGPQAY 74

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISEWK 565
             +  Y   +L  +  +  E+  +       + ++ +       +   +   + DI+  K
Sbjct: 75  DDLEPYFERVLQGERVEYEERCLVRGLGLRWIKAIYVPTYDARGTPDGWIAVVTDITRRK 134

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + +  L        +    K DFLA ++HE+R PL  I     ++   R   L +P+++ 
Sbjct: 135 ELEEML-------RESDRRKDDFLAMLAHELRGPLAPIRNAVAIM---RVLGLEDPKFVY 184

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
             + I+R  + +  +V+DLLD+S+I  GK+ L  E + L + V EA+   +         
Sbjct: 185 ARDIIERQVSHMARLVDDLLDVSRISRGKIALQRETLELADLVQEAVEATRPVIQTPGHT 244

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +  +      RI AD   + Q+ +N+L+NA  FTP GG+I I  + +   E ++RV DTG
Sbjct: 245 LSVTLPAEQLRIEADRVRIVQVIVNLLTNAAKFTPPGGRIGIEVSRSEAGEAVIRVTDTG 304

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLI 804
           VG+      +  + F Q  +       G G+GL LAK +VD + G+  + S    +G   
Sbjct: 305 VGIEEAMQPRVFEAFVQETSDLARSQGGLGVGLWLAKQLVDLHGGRIDVESAGRGRGAAF 364

Query: 805 EIIFP 809
            +  P
Sbjct: 365 TVTLP 369



 Score = 57.7 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 48/496 (9%), Positives = 118/496 (23%), Gaps = 30/496 (6%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVS-DILHIDPNNHIGDLLKRQNTWYGKTTL 149
                  +S E    I   A +++G R+ +V     + D   +   +L+ +   Y +  L
Sbjct: 38  RDLRYLWVSPEYAAWIARPAAEIVGQRIVEVLGPQAYDDLEPYFERVLQGERVEYEERCL 97

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
             + G  L   I    +P Y       G+    +V       +   + +  D++      
Sbjct: 98  --VRGLGLR-WIKAIYVPTYDARGTPDGW--IAVVTDITRRKELEEMLRESDRRKDDFLA 152

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
           +                       + +   +      + +  D+++ +   +    +  L
Sbjct: 153 MLAHELRGPLAPIRNA--------VAIMRVLGLEDPKFVYARDIIERQVSHMARLVDDLL 204

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
                       Q    +    +Q   + +   +    H        E   +  + V   
Sbjct: 205 DVSRISRGKIALQRETLELADLVQEAVEATRPVIQTPGHTLSVTLPAEQLRIEADRVRIV 264

Query: 330 PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389
            +        NL      F        ++      G + +                ++ +
Sbjct: 265 QVIV------NLLTNAAKFTPPGGRIGIEVSRSEAGEAVIRVTDTGVGIEEAMQPRVFEA 318

Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449
                +  AR                                G         + +   E 
Sbjct: 319 FVQETSDLARSQGGLGVGLWLAKQLVDLHGGRIDVESAGRGRGAAFTVTLPALPRNARET 378

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
           +   L      +   I ++      L T  ++  L      ++  +   +        + 
Sbjct: 379 QPAGLREPTAGSPLRILVVEDN---LDTAESLKMLLELHGHEVWMEHDGLAALHAFSRLC 435

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN 569
                  L L L    E        +     L + +              D +E ++   
Sbjct: 436 PDIAFVDLGLPLLDGFEVARRARRDQGTAGCLLVALSGYGRD-------EDKAEARRAGF 488

Query: 570 KLSHAKKIAEKESSHK 585
            L   K    +  +  
Sbjct: 489 DLHLTKPADTEAIAEL 504


>gi|186683956|ref|YP_001867152.1| hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186466408|gb|ACC82209.1| hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 609

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 80/261 (30%), Positives = 138/261 (52%), Gaps = 5/261 (1%)

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
            + +  I  W+Q+  +LS++ +  E+ +  K+ FLA  SHEIRTPL++IIGF+ ++    
Sbjct: 203 LVQLRHILSWQQQYQQLSNSNQELERTNQLKNQFLANTSHEIRTPLSSIIGFTNLLLAPG 262

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
           + P    R  EY N I  SG  +L ++ND+LD+SKIE+ ++ + +E V +    S  ++L
Sbjct: 263 YEP-TIERQREYLNIIQSSGKHLLALINDILDLSKIEANQLEVQWECVDVPLLCSNVLAL 321

Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
           V+  A  K + +      +I  ++AD   +KQ+ LN+L NA+ FT  G    +     + 
Sbjct: 322 VKEKAANKDLRLCLEIDPDITTLVADSLRLKQMLLNLLFNALKFTSKGS---VGLQVVAK 378

Query: 735 E-EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
              V   V DTG G++  +  +  +P+ QI  +     EGTGLGL + + +   + G   
Sbjct: 379 GISVHFTVWDTGSGISQEDQTQLFEPYFQIAKAVAGGAEGTGLGLAVTRKLAQIHGGSVK 438

Query: 794 IFSTPAKGTLIEIIFPLYDTS 814
           + S    G+   ++ PL   +
Sbjct: 439 VESEVDSGSRFTLVLPLQQEA 459


>gi|260220991|emb|CBA29109.1| Phosphate regulon sensor protein phoR [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 420

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 75/368 (20%), Positives = 148/368 (40%), Gaps = 31/368 (8%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            + E ++    + L+A+ +G+ +++  G I   N+   + FG+     + + F   +   
Sbjct: 72  AEGETKLQDFLAALQASPNGVVLLDANGRIEWFNQMAGQHFGFDARRDMLQHFGNLVRDP 131

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK-LLSLRIIIKKLPFSSCYSLTMHDISE 563
             +                +   +  G        + L + +          L+  DI+ 
Sbjct: 132 GFATYY--------SGQDFSQGLVMPGRESTGSKPVRLSVHLHPYGEGRNLLLS-RDITA 182

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            +Q +              + + DF+A VSHEIRTPLT + GF E ++     PL     
Sbjct: 183 LEQAE--------------AMRRDFVANVSHEIRTPLTVLAGFVETLQT---LPLDESER 225

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA---ISLVQLYAN 680
             Y N + +    +  +VNDLL +S++E        + V + + + +       +     
Sbjct: 226 QSYLNLMSQQATRMQSLVNDLLTLSRLEGSPAPSGSDLVDMVQLLQQCKQEAHNLSSLVW 285

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
            K   I+   ++ +  +      +     N++ NAI +TP+   I +    T+  E  L 
Sbjct: 286 GKPQDIQFLVSDAV-AVTGSPSELHSAVFNLIGNAIRYTPADKSIRVHWHKTAEGEGELS 344

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V+DTG G+    + +  + F ++  S+     GTGLGL + K +   +  +  I S P +
Sbjct: 345 VQDTGPGIAPEHIPRLTERFYRVDRSRSRDTGGTGLGLAIVKHVAQRHGAELLIESIPGR 404

Query: 801 GTLIEIIF 808
           G+   + F
Sbjct: 405 GSTFTLRF 412


>gi|229515046|ref|ZP_04404506.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae TMA 21]
 gi|229347751|gb|EEO12710.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae TMA 21]
          Length = 1176

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 90/382 (23%), Positives = 160/382 (41%), Gaps = 24/382 (6%)

Query: 441 RINKRKMEIEVMQLC---SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP- 496
           R +++  ++   QL     +L+A    I I + +G ++ TN A  K++    E    +P 
Sbjct: 511 RSSEQVAKLSTEQLRWLTELLDAIPSMIFISDAKGEVVLTNAAYRKIYHTCCEKGCVQPQ 570

Query: 497 --FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554
              +     +        + +    +         +             I   +     Y
Sbjct: 571 PECSFLALPDQHEAEFSIIIQAPKSNCSIGEHYFHVTRRA---------ISHPINQRKYY 621

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
               +DI+E K+ +  L  + + A +    ++ FLA VSHE+RTP+ A++G  E++ ++ 
Sbjct: 622 LTLFNDITELKETEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGLMEILASR- 680

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
              L +            S   +   VND+LD SKIE+ ++ L     +L + +   +  
Sbjct: 681 ---LKSSESQLLLTNAISSAERLKLHVNDILDFSKIEAQQLQLDIGLYNLADELGPLLRG 737

Query: 675 VQLYANEKRILIRTSFANN-IPRILADLRSVKQIALNILSNAIHFTPSGGQI-IISTTHT 732
            +  A  K I     ++ N +     D     QI  N+LSNAI FT  G  +  I     
Sbjct: 738 FEASAQLKEIEFDVIWSPNSLLLANFDSLRFNQIVTNLLSNAIKFTDQGRVVFKIDVAPE 797

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
               + + V DTG GMT  ++E    PF Q  ++   R  GTGLG+ +   +++   GK 
Sbjct: 798 ---MLTIVVEDTGCGMTQTQIESLFVPFAQADSTITRRFGGTGLGMSIVANLIELMNGKI 854

Query: 793 YIFSTPAKGTLIEIIFPLYDTS 814
            + S   +GT I++  PL   +
Sbjct: 855 EVKSEFEQGTQIQVNLPLVTQT 876


>gi|192361523|ref|YP_001983038.1| GacS [Cellvibrio japonicus Ueda107]
 gi|190687688|gb|ACE85366.1| GacS [Cellvibrio japonicus Ueda107]
          Length = 974

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 88/313 (28%), Positives = 149/313 (47%), Gaps = 12/313 (3%)

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
           ++    +N      L+  +R+       G  +    ++  +   +    +     + D+ 
Sbjct: 227 EHVKETVNQLARGKLNERIREQHTSEFFGLAESINTMAASMEAAQEDMQAHIDNAIEDLR 286

Query: 563 EWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
           E  +       +L  A+K A + S  KS+FLA  SHEIRTPL  I+GF  +         
Sbjct: 287 ETLETIEIQNVELDMARKEALEASRVKSEFLANTSHEIRTPLNGILGFINLALKTEL--- 343

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
            N +  EY   I  S   +L ++N +LD SKIESGK+ L + P+ + + V E + ++   
Sbjct: 344 -NEKQREYMETIRDSAQNLLTVINGILDFSKIESGKLTLDYAPLPIRKTVDEVLHMLAPD 402

Query: 679 ANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEE 736
           A+EK + + T     IPR +L D    KQ+  N+++NAI ++ +G  I+ IS       +
Sbjct: 403 AHEKNLQLITYIEPCIPRNLLGDALRFKQVLSNLVTNAIKYSDAGNIIVDISIAQRQETQ 462

Query: 737 VIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
           + L   V D G+G++  E E     F Q+ +S     +GTGLGL + K +V+   G+  +
Sbjct: 463 ITLKVAVTDQGIGLSQEEQENLFSAFSQVDSSSSREHDGTGLGLAICKGLVERMHGEIGV 522

Query: 795 FSTPAKGTLIEII 807
            S P +G+     
Sbjct: 523 VSAPEQGSTFWFT 535


>gi|222053139|ref|YP_002535501.1| response regulator receiver sensor signal transduction histidine
           kinase [Geobacter sp. FRC-32]
 gi|221562428|gb|ACM18400.1| response regulator receiver sensor signal transduction histidine
           kinase [Geobacter sp. FRC-32]
          Length = 478

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 86/492 (17%), Positives = 182/492 (36%), Gaps = 33/492 (6%)

Query: 325 TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
             D       +         + S   +    +++   +      ++   ++   NA++ +
Sbjct: 10  LEDSEEDAVLLVRELKKGGMDLSHERIDTPTALERALVQRTWDIIIADYRMPGFNAVEAL 69

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMT-----FIPFEKANQFPENMPQNGIEPEDVD 439
            + R     I        I  +   +          +    +   P    +     E   
Sbjct: 70  EILRGTDMDIPFIILSGKIGEDLAVAAMKAGANDYVMKSNLSRLVPAIQRELREAEERKR 129

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILRKPFT 498
            R  +  ++ +  Q+ +I ++ +  +++ + E   +L  NR   KL G    +   K   
Sbjct: 130 RREAEEALKNQFRQITAIFDSMNAMVSVADMESHELLFMNRFGGKLAG---GEWKGKKSH 186

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY-SLT 557
             L  +        L  +   + +              +           P         
Sbjct: 187 EVLNYDQSLCTKETL--LRDGEPQPPFVWEYQNPI-SGRWYQCIDKAIYWPDGRLVRLQI 243

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
             DISE K+ +                K + ++ VSHE+RTPLTA++GF+E +      P
Sbjct: 244 AVDISERKEIE--------------QMKDEMISAVSHEMRTPLTAMLGFTEYLLENEVDP 289

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
               +   Y N I +    + +++ + LD+ +I +        P+ +   + +A  L  L
Sbjct: 290 ---SQLKNYLNTIYKETARLKELIGNFLDLQQINARMTTYRMHPLDVCLLIKDAAGLFAL 346

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737
             +  R  +      NIP +  D   + Q+  N++SN + ++ +  ++ +       ++V
Sbjct: 347 DYDSGR--LVVQCPRNIPPLQGDEARLHQVLTNLISNGLKYSQAPARVTVGAEAE-GDQV 403

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
           ++ V+D G G+     EK  + F +I N+ +    GTGLGL L + +V A+ G+ ++ S 
Sbjct: 404 VVWVKDEGCGIPPELQEKIFEKFYRIDNTDRRHIGGTGLGLALVREIVAAHGGRVWVTSE 463

Query: 798 PAKGTLIEIIFP 809
             +G+   I  P
Sbjct: 464 VGRGSTFFISLP 475


>gi|297516444|ref|ZP_06934830.1| phosphate regulon sensor protein [Escherichia coli OP50]
          Length = 345

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 67/369 (18%), Positives = 138/369 (37%), Gaps = 33/369 (8%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +  +R++   + +  S  E+  D + +   EG I   N    ++ G    +   +     
Sbjct: 1   KKRRRELGNLIKRFRSGAESLPDAVVLTTEEGGIFWCNGLAQQILGLRWPEDNGQNILNL 60

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
           L     +               +   +         + L +R++           +   D
Sbjct: 61  LRYPEFTQYL----------KTRDFSRPLNLVLNTGRHLEIRVMPYTHKQ---LLMVARD 107

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           +++  Q +                + +F A VSHE+RTPLT + G+ E++  Q       
Sbjct: 108 VTQMHQLEG--------------ARRNFFANVSHELRTPLTVLQGYLEMMDEQPLEGAVR 153

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
            +     + +      +  +V  LL +SKIE+    L  E V +   +       Q  + 
Sbjct: 154 EKA---LHTMREQTQRMEGLVKQLLTLSKIEAAPTQLLNEKVDVPMMLRVVEREAQTLSQ 210

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
           +K+        N + ++  +   ++    N++ NA++ TP G  I +      +      
Sbjct: 211 KKQ-TFTFEIDNGL-KVSGNEDQLRSAISNLVYNAVNHTPEGTHITVRWLRVPHG-AEFS 267

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V D G G+    + +  + F ++  ++  +  G+GLGL + K  V+ +  +  I ST  K
Sbjct: 268 VEDNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHAVNHHESRLNIESTVGK 327

Query: 801 GTLIEIIFP 809
           GT    + P
Sbjct: 328 GTRFSFVIP 336


>gi|126667179|ref|ZP_01738153.1| Signal transduction histidine kinase [Marinobacter sp. ELB17]
 gi|126628335|gb|EAZ98958.1| Signal transduction histidine kinase [Marinobacter sp. ELB17]
          Length = 969

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 79/246 (32%), Positives = 132/246 (53%), Gaps = 12/246 (4%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  A+K A + S  KS+FLA +SHEIRTPL  IIGF+E++           +  ++ N 
Sbjct: 285 ELDFARKEALEASRIKSEFLANMSHEIRTPLNGIIGFTELLLKGSLAR----QQRDHLNT 340

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I +S  ++L I+ND+LD SKIE+GK+     P  L + V E + ++   A++K + + T 
Sbjct: 341 IRKSSEILLTIINDILDFSKIEAGKLTFDRVPFQLRDIVEEVMVMLAPAAHDKNLDLVTL 400

Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE------EVILRVR 742
             N++P  ++ D   +KQI  N+L+NAI FT +G ++++  +    +       + + V 
Sbjct: 401 VYNDVPNNLMGDPLRLKQIITNLLNNAIKFTHTG-EVVLRASLEEEDASNGSVTLRVSVA 459

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG+G++  +       F Q   S   +  GTGLGL ++K + +   GK  + S   KG+
Sbjct: 460 DTGMGLSRAQQRSLFDAFSQADASTARQYGGTGLGLAISKRLAEEMGGKIGLESELGKGS 519

Query: 803 LIEIIF 808
                 
Sbjct: 520 TFWFTL 525


>gi|295109684|emb|CBL23637.1| Signal transduction histidine kinase [Ruminococcus obeum A2-162]
          Length = 850

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 91/441 (20%), Positives = 175/441 (39%), Gaps = 50/441 (11%)

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK---MEIEVMQLCSIL 458
            I  N E              +  ++        +  + ++   +   M  +   +  ++
Sbjct: 361 RITLNGEERW---VRNVIIRGEIEDSEYAMIFLRDITEAKVESARHLQMAADNASMEQLI 417

Query: 459 EATS---DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH---Y 512
           ++     D   + + E      N      F      ++ KP       +    +      
Sbjct: 418 QSIVRLVDRFVVCDLE------NDRYE--FYSLNGQMIYKPLG--FYHDFQMQVLEKYKT 467

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLR-----------IIIKKLPFSSC----YSLT 557
           L  + ++D+  T + I      E  +                    + + +       L 
Sbjct: 468 LEPLEAMDILITPDNIRKNLKSENNIYKFEYCSLDEKTYKIASYIPMEWKNGKLLKVLLA 527

Query: 558 MHDISEWKQEKNKLSHAKKIAEK----ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
             D+++ K+ + +   A K A +     +  K++FL+ +SH+IRTP+ AI+G + +    
Sbjct: 528 SMDVTQEKKAEIESRQALKEAYRSAENANRAKTEFLSNMSHDIRTPMNAIVGLTAIAGAN 587

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
                   R IE    I  S   +L ++N++LD+++IESGKM L  E  +L E V   I+
Sbjct: 588 I---ESQDRVIECLGKITESSRHLLGLINEVLDMARIESGKMTLAQEDFNLSELVDNLIT 644

Query: 674 LVQLYANEKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
           L Q   +E +        +     +  D   ++Q+ +N++SNAI +TP GG II S    
Sbjct: 645 LTQPVLDEHKHNFDIHINHIEHEDVCGDSLRIQQVFVNLMSNAIKYTPDGGNIIFSIEEK 704

Query: 733 SNEE-----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
            N           + D G+GM+    +    PF +  + +  R +GTGLG+ +++ +V+ 
Sbjct: 705 PNGFSELGCYEFTIEDDGIGMSPEFQKIMFDPFSRADDHRTTRVQGTGLGMAISRNIVNL 764

Query: 788 NMGKFYIFSTPAKGTLIEIIF 808
             G   + ST  +GT I +  
Sbjct: 765 MNGNIKVDSTLHQGTKITVTI 785


>gi|253565168|ref|ZP_04842624.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|251946633|gb|EES87010.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
          Length = 565

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 97/521 (18%), Positives = 188/521 (36%), Gaps = 42/521 (8%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFF---VYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365
              ++  D+      + +D  P P     +       Y N    L +     D +     
Sbjct: 61  RKSASADDDYRRFLFDILDNLPFPIMVKDIQEQFKYTYWNKESELQSGISRKDAVG--FS 118

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
              +    +      I   ++       I   A    +  + +    +       + +  
Sbjct: 119 DVDIFGEERGKQYRKIDEDLVRAG----IPYKAEERYVTADGKVHDTLVMKSIISSGKLG 174

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLC-------SILEATSDGIAIINREGIILSTN 478
           + +       E    ++ +R++     QL          L +   G+  I+R  ++    
Sbjct: 175 KWL--LVARWEITQLKMYERELLAAKEQLEGAVRKQKLALRSIDFGLIYIDRNYLVQW-- 230

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNT------PSVMNHYLTEILSLDLRQTLEKITLGS 532
               +  G     +  + +T                      E +               
Sbjct: 231 ----EETGNIKNLVSGRHYTPGTVCYRTTGQGTQPCGKCAFREAIGTGKIVRHITHVDHV 286

Query: 533 TKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
             E     +              L   DI+E  + +  L  AK+ AE+ +  KS FLA +
Sbjct: 287 DFEITATPVYDDTGNEIIGG--LLRFEDITEKLKVERMLQEAKEKAEESNRLKSAFLANM 344

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHEIRTPL AIIGFS++I              EY   +  +  L+L +++D+LD+SKIE+
Sbjct: 345 SHEIRTPLNAIIGFSDLICQTD----DAEEKEEYIRIVTSNNELLLQLIDDILDLSKIEA 400

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712
           G M+  + P  ++E + +    +Q       + I  +       I  D   + Q+ +N++
Sbjct: 401 GTMDFSYAPTDINELMEDICLQMQQKNQRPEVQIMFTEKEPGCVINTDRLRLSQVIMNLM 460

Query: 713 SNAIHFTPSGGQIIISTTH-TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           +NA+ FT  G  I +        +E+   V+DTG+G+   +  K  + F ++        
Sbjct: 461 NNAMKFTSEGS-ITLGYRLTRQKDELYFFVKDTGIGIPADQAGKVFERFVKLNTF----V 515

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
           +GTGLGL + + +++   G   + +   KG+      P+ +
Sbjct: 516 KGTGLGLAICRVIIERLGGTIGVETREGKGSCFWFRLPVRE 556


>gi|240142103|ref|YP_002966613.1| putative multi-sensor hybrid histidine kinase [Methylobacterium
           extorquens AM1]
 gi|240012047|gb|ACS43272.1| putative multi-sensor hybrid histidine kinase [Methylobacterium
           extorquens AM1]
          Length = 1223

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 111/648 (17%), Positives = 225/648 (34%), Gaps = 40/648 (6%)

Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP--PPHLRMKNKVSSLTEYYAHKD 251
                    +   L +I        +         +P       ++  + +  E  +  D
Sbjct: 333 LEATLEGVGQGIALFDIDGRLVHANRLAAGWLGYATPEDAAGRTIEEILRAQIERGSFAD 392

Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
           D      Y  + S+  +         + +   T  +      +  +    Y    +    
Sbjct: 393 DEDPDALYARMVSQCGTSSSGPVVCIMRMADGTCLEVKTISAHRGRTVRVYSDVTDSLKA 452

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
            A  +E        ++       V      L   N     L +    + +        + 
Sbjct: 453 KATLEEKTLFLETVLENTGEGILVCDRDQRLRLVNGKAAALARVPP-EAVVGLRIADYVA 511

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
            A + ++ +  +       DR    +       + +    L +        +        
Sbjct: 512 MALEDTEGDTSRSRTEAILDRFLGGSEIAAGVRRHDLGRDLVLEIRTNPLGDG-----GW 566

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCS-------ILEATSDGIAIINREGIILSTNRAVSK 483
             +  +      N   +E     L          L+A   GI  +  +G +   NR + +
Sbjct: 567 VMVTTDVTTAHRNAEALEKSEAVLKEKSAALEITLDAIDQGILTVAADGRVAVANRRLPE 626

Query: 484 LFGYPVEDIL-RKPFTVFLEQNTP----------SVMNHYLTEILSLDLRQTLEKITLGS 532
           L G   + +L  + F   + +                       ++         + +GS
Sbjct: 627 LMGVSPDTLLPGRHFGGAVRERFAAGYYPESAEVESRIGEYERFVASWPADLPPTVRVGS 686

Query: 533 TKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
             + + +       +        LT  D++  +  ++ L  AK+ AE  +  KS F+A +
Sbjct: 687 GPDGREIE---TFTRPLAGGGIVLTARDVTRQRAAESALEAAKEAAEAGNRAKSTFVATM 743

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHEIRTPL  +IG +EV+     G   + R  EY   I   G+ +L IV+D+LD SK+E+
Sbjct: 744 SHEIRTPLNGVIGMAEVLS----GTDLDDRQREYLATIRECGDALLSIVSDILDFSKLEA 799

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNI 711
           G+      PV ++      + ++   A    +++     +++P R+L D   ++Q+ LN+
Sbjct: 800 GRTEFVQRPVDVEAGAKSVLDIIGATAAGGDVVVGLEIRDDVPRRVLTDGSRLRQVLLNL 859

Query: 712 LSNAIHFTPSGGQIIISTTHTSNE---EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
             NA+ FT +GG+++I  + + +     +   + D+G  +   +     + F Q+ N   
Sbjct: 860 AGNAVKFTGAGGEVLIRLSMSGDGARRMLRYEIEDSGTPIAAEKRPLLFREFSQLGNGFI 919

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT-LIEIIFPLYDTSH 815
               GTGLGL +++ +V+   G      T   GT +     P   T  
Sbjct: 920 AGQGGTGLGLAISRRIVEGLGGSIGYKPT-DDGTNVFWFEIPCVPTDE 966



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 66/534 (12%), Positives = 144/534 (26%), Gaps = 45/534 (8%)

Query: 76  FDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD 135
           FDP    V     +DA G ++  ++      G + F + G    +       DP + I  
Sbjct: 99  FDPDSGEVVHIAVVDAEGRIEHSTKG----RGPFDFTLAGSAHFE---AFKADPTDRI-- 149

Query: 136 LLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFG--------IVHVN 187
                          P  G      I   + PI + +  F G             +    
Sbjct: 150 -----------IVSQPEFGRVTNRSIVKVSRPIRNPDGTFGGLVSASLLPETLTKVFRTV 198

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247
            +     A+    + +            SV     +   + S        ++V     + 
Sbjct: 199 DLGAHGSAMVTGAEGRILARTPQSGIGISVLTYLTEGPPESSCRTISSKVDEVRRHFCFS 258

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
           A     L       +    +        + I     +       L     +     +   
Sbjct: 259 AVSGMPLVVGVGMGVDDVLAQSSATRGNYLIGAMVLSAAIVAAALLIARDQRRRVAAAAA 318

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
               +        L   T++       ++   G L +AN        Y + +D       
Sbjct: 319 VERGNVELQSKSELLEATLEGVGQGIALFDIDGRLVHANRLAAGWLGYATPEDAAGRTIE 378

Query: 367 STLLDAPKL----SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
             L    +      D +         S     ++   +  ++      L +  I      
Sbjct: 379 EILRAQIERGSFADDEDPDALYARMVSQCGTSSSGPVVCIMRMADGTCLEVKTI------ 432

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
                     +  +  D+   K  +E + + L ++LE T +GI + +R+  +   N   +
Sbjct: 433 -SAHRGRTVRVYSDVTDSLKAKATLEEKTLFLETVLENTGEGILVCDRDQRLRLVNGKAA 491

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL----GSTKEEKL 538
            L   P E ++      ++                   L + L    +          + 
Sbjct: 492 ALARVPPEAVVGLRIADYVAMALEDTEGDTSRSRTEAILDRFLGGSEIAAGVRRHDLGRD 551

Query: 539 LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
           L L I    L     + +   D++   +    L  ++ + +++S+     L  +
Sbjct: 552 LVLEIRTNPL-GDGGWVMVTTDVTTAHRNAEALEKSEAVLKEKSAALEITLDAI 604



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 46/386 (11%), Positives = 89/386 (23%), Gaps = 51/386 (13%)

Query: 90  DAHGYLKEISEELPKTIGN-YAFKMIGMRLCDV--------SDILHIDPNNHIGDLLKRQ 140
           D  G L   +      +G        G  + ++        S     DP+     ++ + 
Sbjct: 348 DIDGRLVHANRLAAGWLGYATPEDAAGRTIEEILRAQIERGSFADDEDPDALYARMVSQC 407

Query: 141 NTWYGKTTL---WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG 197
            T      +      +GT L V   ++A                  V V     D     
Sbjct: 408 GTSSSGPVVCIMRMADGTCLEVK-TISAHRGR-------------TVRVYSDVTDSLKAK 453

Query: 198 KRLDKKFSHLHEIKKGHSSV-----EKEKYDIFSQQSPPPHLRMKNKVSSLTEYY----A 248
             L++K   L  + +            ++  + + ++          V  L        A
Sbjct: 454 ATLEEKTLFLETVLENTGEGILVCDRDQRLRLVNGKAAALARVPPEAVVGLRIADYVAMA 513

Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE---------- 298
            +D    T +       +  L   E    +  +   +        N   +          
Sbjct: 514 LEDTEGDTSRSRTEAILDRFLGGSEIAAGVRRHDLGRDLVLEIRTNPLGDGGWVMVTTDV 573

Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSV 357
           +  + +        A   E       T+D        V + G +  AN     L      
Sbjct: 574 TTAHRNAEALEKSEAVLKEKSAALEITLDAIDQGILTVAADGRVAVANRRLPELMGVSPD 633

Query: 358 DDIEIA--GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
             +     GG      A      +A     +   +R   +  A L               
Sbjct: 634 TLLPGRHFGGAVRERFAAGYYPESAEVESRIGEYERFVASWPADLPPTVRVGSGP---DG 690

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTR 441
              E   +            +    R
Sbjct: 691 REIETFTRPLAGGGIVLTARDVTRQR 716



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 68/223 (30%), Gaps = 20/223 (8%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRKPFTVFLE-- 502
           +++ +   L + LE    GIA+ + +G ++  NR  +   GY   ED   +     L   
Sbjct: 325 ELQSKSELLEATLEGVGQGIALFDIDGRLVHANRLAAGWLGYATPEDAAGRTIEEILRAQ 384

Query: 503 ------QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556
                  +       Y   +       +   + +    +   L ++ I            
Sbjct: 385 IERGSFADDEDPDALYARMVSQCGTSSSGPVVCIMRMADGTCLEVKTISA---HRGRTVR 441

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
              D+++  + K  L       E    +  + +     + R  L  + G +  +      
Sbjct: 442 VYSDVTDSLKAKATLEEKTLFLETVLENTGEGILVCDRDQR--LRLVNGKAAALARVPPE 499

Query: 617 PLGNPRYIEYANYIDRSGN------LVLDIVNDLLDISKIESG 653
            +   R  +Y                   I++  L  S+I +G
Sbjct: 500 AVVGLRIADYVAMALEDTEGDTSRSRTEAILDRFLGGSEIAAG 542



 Score = 45.4 bits (106), Expect = 0.045,   Method: Composition-based stats.
 Identities = 50/522 (9%), Positives = 123/522 (23%), Gaps = 32/522 (6%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCD-----VSDILHIDPNNHIGDLLKR--QNT 142
           D    L+ ++ +           ++G+R+ D     + D       +    +L R    +
Sbjct: 478 DRDQRLRLVNGKAAALARVPPEAVVGLRIADYVAMALEDTEGDTSRSRTEAILDRFLGGS 537

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
                      G +L +  ++   P+                          A+ K    
Sbjct: 538 EIAAGVRRHDLGRDLVL--EIRTNPLGDGGWVMVTTDVTTAHRNAEALEKSEAVLKEKSA 595

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
                 +              +       P       + +     +     +      YP
Sbjct: 596 ALEITLDAIDQGILTVAADGRVAVANRRLPELMGVSPDTLLPGRHFGGAVRERFAAGYYP 655

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
                ES + E E F              G+  +  +             +    D    
Sbjct: 656 ESAEVESRIGEYERFVASWPADLPPTVRVGSGPDGREIETFTRPLAGGGIVLTARDVTRQ 715

Query: 321 LTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
              E+  +         +     A  +F+    ++    +    G++ +L    L D   
Sbjct: 716 RAAESALEAAKEAAEAGN----RAKSTFVATMSHEIRTPLNGVIGMAEVLSGTDLDDRQR 771

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD- 439
                +       ++  + +                P +        +   G      D 
Sbjct: 772 EYLATIRECGDALLSIVSDILDFSKLEAGRTEFVQRPVDVEAGAKSVLDIIGATAAGGDV 831

Query: 440 ------TRINKRKMEIEVMQLCSI-LEATSDGIAIINREGIIL----STNRAVSKLFGYP 488
                      R++  +  +L  + L    + +      G +L     +     ++  Y 
Sbjct: 832 VVGLEIRDDVPRRVLTDGSRLRQVLLNLAGNAVKFTGAGGEVLIRLSMSGDGARRMLRYE 891

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
           +ED    P             +      ++      L         E     L   I   
Sbjct: 892 IED-SGTPIAAEKRPLLFREFSQLGNGFIAGQGGTGLGLAISRRIVEG----LGGSIGYK 946

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
           P     ++   +I     ++ ++ +   +  + +      LA
Sbjct: 947 PTDDGTNVFWFEIPCVPTDETEIGYDGAVHRERNVPLRILLA 988


>gi|238760599|ref|ZP_04621729.1| hypothetical protein yaldo0001_37760 [Yersinia aldovae ATCC 35236]
 gi|238701186|gb|EEP93773.1| hypothetical protein yaldo0001_37760 [Yersinia aldovae ATCC 35236]
          Length = 1193

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 103/379 (27%), Positives = 175/379 (46%), Gaps = 14/379 (3%)

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
           E       + K++ +     ++   T     +++ EG ILS N+A  + F    +++   
Sbjct: 552 EVRTRHSIQLKLQEQSTLRETLFNGTPMPTYVVDLEGNILSHNQAWDEFFIQETKNLATM 611

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--C 553
           P T              LT++ +L ++   ++  L +  E++++  +    K        
Sbjct: 612 PLTSREHPLFIINF--ALTQVRTLPVKSAPQRYRLSNGVEDRVILHQSTPFKRSDGELLG 669

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
              +  D++E++    +LS A++ AE+ +  KS FLA +SHEIRTPL+AIIG  E+    
Sbjct: 670 LICSWQDMTEYEFLIKELSAARENAEQANRTKSTFLATMSHEIRTPLSAIIGLLELAVTN 729

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
           +  P               S + ++ +V D+LDI+KIESGK+ L  E +  +E  S  I 
Sbjct: 730 KGHPGTEES----IQVAYESAHTLMGLVGDILDIAKIESGKLELTLEWMKFNELFSPVIP 785

Query: 674 LVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTH 731
           +    A +K + +        P  I  D   + QI  N++SNAI FT  G   I +    
Sbjct: 786 VFMGLARQKHLELTCDIDVLHPEEIYVDPIRLHQIMFNLVSNAIKFTEQGSVDIQVKCLS 845

Query: 732 TSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
            S+++V+L   V DTGVG+   +  +   P+ Q       +  GTGLGL +   +V    
Sbjct: 846 GSDQQVMLELVVNDTGVGIPQDDQPQIFSPYKQSDAG--KKQVGTGLGLSICAQLVSMMG 903

Query: 790 GKFYIFSTPAKGTLIEIIF 808
           G   +FS P +GT I +  
Sbjct: 904 GTIELFSQPGRGTRITVEI 922


>gi|148975382|ref|ZP_01812306.1| hypothetical two-component sensor [Vibrionales bacterium SWAT-3]
 gi|145965306|gb|EDK30556.1| hypothetical two-component sensor [Vibrionales bacterium SWAT-3]
          Length = 796

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 75/253 (29%), Positives = 122/253 (48%), Gaps = 12/253 (4%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I   +Q+  +L  AK+ AE  + +KS+FLA +SHEIRTP+  IIG S ++          
Sbjct: 219 IERIRQQYQELIKAKETAEVANRNKSEFLANMSHEIRTPMNGIIGLSSLLSEMDM----P 274

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
               EY N ++ S   +LD++ND+LD SKIE+G++ L  EP+ +    ++  S  ++ A 
Sbjct: 275 KEQKEYVNMLNTSSLTLLDLINDILDYSKIEAGRLELQQEPMKMMGIAADVESTFRVKAE 334

Query: 681 EKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT------S 733
           +K +  +      IP  ++ D   ++Q+  N++ NAI FT  G  + +S           
Sbjct: 335 QKGLRFQLEIDPKIPTMVIGDGTQLRQVLNNLVGNAIKFTERG-HVTLSLRLEKVIEPEQ 393

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
              V   V D+G+G+   + +     F Q   S      GTGLGL +   +V     K  
Sbjct: 394 KLRVRFEVADSGIGIAEDKQKSVFDKFQQADGSTTRIYGGTGLGLTICDKIVTLMGSKLE 453

Query: 794 IFSTPAKGTLIEI 806
           + S   KG+    
Sbjct: 454 LTSIEGKGSTFYF 466


>gi|116051045|ref|YP_790128.1| putative two-component sensor [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115586266|gb|ABJ12281.1| putative two-component sensor [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 741

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 90/379 (23%), Positives = 162/379 (42%), Gaps = 19/379 (5%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF--T 498
           +  +  +   +    ++++     ++I   +G +L+ NR   +      E         +
Sbjct: 101 QRTEADLSGRLALKQALVDGIPYPVSIRTLDGRLLACNRNYLESLRMTREQARGTLLTDS 160

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM 558
            ++E +   +M+     +         +          +LL +   +          L +
Sbjct: 161 DWVEGSKARLMHQQCLAVARGGTASFTDMAVRI---GGQLLEIHHWVTPYRDRQGRVLGL 217

Query: 559 ----HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E ++   +L  A + A + +  KS FLA +SHEIRTP+ A+IG  E +  QR
Sbjct: 218 MNGWIDITERERLARQLREAMRQAGEANRAKSVFLATMSHEIRTPMNAVIGILE-LVLQR 276

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
             P    R          +   +  ++ D+LD++KIESG + L  E V L   V     +
Sbjct: 277 LAPEQRERAS--LEVAYEAAGSLQLLIGDILDVAKIESGHLTLTPERVRLRHVVESVRRM 334

Query: 675 VQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
            +  A +K + +     +     +L D    KQ+  N++SNAI FT  G Q+ I     S
Sbjct: 335 FEGLARQKGLRLVVELDDAPGRDVLIDPLRFKQVLSNLVSNAIKFTERG-QVTIRLQERS 393

Query: 734 NEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
            +E    V + V D+G+G+   +  +  +PF Q+   +     GTGLGL + + +VD   
Sbjct: 394 LDEGRAIVRVDVEDSGIGIAPADQARLFQPFIQVAKGRT-VQGGTGLGLAICRKLVDLMG 452

Query: 790 GKFYIFSTPAKGTLIEIIF 808
           G   + S P KGT + +  
Sbjct: 453 GDVEMHSEPGKGTRVSLDL 471


>gi|88658417|ref|YP_507680.1| sensor histidine kinase [Ehrlichia chaffeensis str. Arkansas]
 gi|88599874|gb|ABD45343.1| sensor histidine kinase [Ehrlichia chaffeensis str. Arkansas]
          Length = 470

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 104/376 (27%), Positives = 179/376 (47%), Gaps = 41/376 (10%)

Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH--YLTEILSLDLR 522
           + + N +G ++ +NR+   +    +           L     + +    Y+   +S    
Sbjct: 95  VILYNVDGNVIFSNRSSEDIADQDL----------LLRSEDMNSLLRGKYVDHRVSNGAT 144

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT------------------------- 557
                       ++    + + I K   +    +                          
Sbjct: 145 TVSIFPIFSLDGQDSSPLMFLKIIKNSENLSSFIVNFYTVFLMIVILVIIIFIVVTWCIY 204

Query: 558 ---MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                 +S+      KL  AK++AE+E+  KS FLA VSHE+RTPL +IIGFSE++K + 
Sbjct: 205 YKNAKMLSKQYNANLKLKEAKEVAEQENVSKSQFLANVSHELRTPLNSIIGFSEMMKAES 264

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
            G + N  Y EY N I  +G  +L ++ND+LD SK E+ K+ + F    L + +S   ++
Sbjct: 265 MGAIENVHYKEYINDIHNAGVHLLSLINDILDFSKAEADKLVVEFVKFDLGKVISSCFNM 324

Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-S 733
           +   A E ++ +     +N   ++AD + +KQ+ +N+LSN+I FTP  G + +   +   
Sbjct: 325 ILPRAEEAKVRLEQVLPSNQIIMVADPKRMKQVIINLLSNSIKFTPENGCVKLVVEYDLE 384

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
           N  +++ V D G+G+   +L K M  FGQ+ +    + EGTGLGLPL+K +V+   G F 
Sbjct: 385 NSMIVIEVIDNGIGIAQQDLYKVMSVFGQVDSRHARKYEGTGLGLPLSKKLVELMDGVFK 444

Query: 794 IFSTPAKGTLIEIIFP 809
           I S P  GT++ ++FP
Sbjct: 445 IKSEPNLGTIVTLMFP 460


>gi|262370814|ref|ZP_06064138.1| two-component sensor [Acinetobacter johnsonii SH046]
 gi|262314176|gb|EEY95219.1| two-component sensor [Acinetobacter johnsonii SH046]
          Length = 452

 Score =  288 bits (736), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 77/408 (18%), Positives = 161/408 (39%), Gaps = 32/408 (7%)

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI--EVMQLCSILEATSDGIAIIN 469
            ++  P+E                     +    + E+   + +  S L A  + + +I+
Sbjct: 75  WISNRPYEVPPNLGGIWGALLFNVYRAQRQERIVQAEMVGLIDRAQSSLVALQEAVVLID 134

Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
               I   N A  +L G    D   +     L Q +     + +         ++     
Sbjct: 135 DMQQIEWWNPAAERLLGIEQND-RGRNILTLLRQPSFVDYYNNIDAAPDGLKMKSSSF-- 191

Query: 530 LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
                +E  + +++            L  +D++     +                + DF+
Sbjct: 192 -----DEHYVQVKMT---RFGGESRLLVAYDVTRMHNLE--------------QMRKDFV 229

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
             +SHE+RTPLT + G+ E   +Q      NPR+    + +      +  +VNDLL +S+
Sbjct: 230 DNISHELRTPLTVLSGYIETFTDQED---LNPRWKRAFDQMQAQAKRMNALVNDLLLLSR 286

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709
           +E+ K     + + +   +++       Y  +    +     ++   I +D   +     
Sbjct: 287 LENDKQIAKNQIIDMPSLMNQLYDDAHAYNIDYGHTLNLDIDSHCDLIGSD-MELASAFS 345

Query: 710 NILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
           N+++NAI +TP GG + +   H + E+    V DTG+G+    L +  + F ++ +++  
Sbjct: 346 NLITNAIKYTPKGGTVTMGW-HDNGEQAYFTVEDTGIGIDPKHLPRLTERFYRVDSARSR 404

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
           +  GTGLGL + K ++  +     I S   +G++ ++IFP   T +P 
Sbjct: 405 QTGGTGLGLAIVKHVLMQHQAHLEIESKENQGSIFKVIFPKERTYNPE 452


>gi|239906517|ref|YP_002953258.1| putative sensor histidine kinase [Desulfovibrio magneticus RS-1]
 gi|239796383|dbj|BAH75372.1| putative sensor histidine kinase [Desulfovibrio magneticus RS-1]
          Length = 542

 Score =  288 bits (736), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 97/543 (17%), Positives = 182/543 (33%), Gaps = 58/543 (10%)

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
           S        L     D  P  FF    G +  Y N SF  L    S + +      +   
Sbjct: 4   SVAARADPALFGAMADASPDLFFYKDSGLVYRYVNRSFCALFDIDSSEILGRVDDDAFPQ 63

Query: 371 DAPKLSDNNAIKPVMLYRSD-----------------------RTCIAASARLHTIQW-- 405
            + +      +  +   RS                         T  A        +   
Sbjct: 64  PSARRHRQADLAVLASRRSQTFEYVVERGDRSVWLQVLKTPVLGTDGAVEGIFCVARNIT 123

Query: 406 ------NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459
                 ++               +         +     +    ++ +E     L  I E
Sbjct: 124 AIKAAEDQNRRTVAVLERDAVDREEELRRTNEELRRLAAERLKAEKALEESHRSLNCIFE 183

Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL 519
            +  GIA +  + I+   N    +L+       +  P   F                 +L
Sbjct: 184 NSPIGIAFV-TDRIVRRANPRFHQLYALEPGQAVGLPTADFYPDAEAYEAFGR-EYYPAL 241

Query: 520 DLRQTLEKITLGSTKEEKLLSLRII---IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKK 576
              + ++ + +    +      RII   +            M D++E +  +        
Sbjct: 242 GAGERVDVVRVMRRHDGTEFWCRIIGQVLDAARPQDGSIWLMEDVTERRLAEE------- 294

Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
                   K +F+  +SHEIRTPL  I+G +EV+       L +P+  E    +  SG  
Sbjct: 295 ATLAAERLKREFMDNMSHEIRTPLNGILGMAEVLS----AGLTDPQQREMLETLKDSGRS 350

Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696
           +  ++ ++LD +++++G +       SL   +    +     A +K + +      + P 
Sbjct: 351 LAALLENVLDFARLDAGDVVSRRAAFSLVNLIEGVAASFAGAAMQKGLHLSWRAQPSTPE 410

Query: 697 -ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---------VILRVRDTGV 746
            ++ D   ++QI   ++SNA+ FT +G   I++                 V L V DTG+
Sbjct: 411 LVVGDGGGLRQILAALVSNAVKFTDAGAIEIVAEARLPQAASRDGQATVLVSLAVHDTGI 470

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+   ++     PF Q+  S+  R  G GLGL +A  +  A  G+  + S P +G++   
Sbjct: 471 GLAPEQISAIFAPFRQVDGSKTRRHGGAGLGLAIAGKLAAAMGGELAVDSEPGRGSVFRF 530

Query: 807 IFP 809
             P
Sbjct: 531 TAP 533



 Score = 54.6 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 32/386 (8%), Positives = 80/386 (20%), Gaps = 43/386 (11%)

Query: 78  PIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL 137
                  F +  D+    + ++          + +++G    D           H    L
Sbjct: 18  ADASPDLFFYK-DSGLVYRYVNRSFCALFDIDSSEILGRVDDDAFPQ--PSARRHRQADL 74

Query: 138 KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG 197
               +   +T  + +E  +  V + +   P+   +    G   F +              
Sbjct: 75  AVLASRRSQTFEYVVERGDRSVWLQVLKTPVLGTDGAVEGI--FCVARNITAIKAAEDQN 132

Query: 198 KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257
           +R           ++       E+    + +       ++    SL   + +    +   
Sbjct: 133 RRTVAVLERDAVDREEELRRTNEELRRLAAERLKAEKALEESHRSLNCIFENSPIGIAFV 192

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
              ++        +                ++   +       EY               
Sbjct: 193 TDRIVRRANPRFHQLYALEPGQAVGLPTADFYPDAEAYEAFGREYYPALGAGERVDVVRV 252

Query: 318 GENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
                                         +  +            G +           
Sbjct: 253 MRRHDGTEF---------------------WCRIIGQVLDAARPQDGSI----------- 280

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
                  ++       +A  A L   +  RE    M+       N              D
Sbjct: 281 ------WLMEDVTERRLAEEATLAAERLKREFMDNMSHEIRTPLNGILGMAEVLSAGLTD 334

Query: 438 VDTRINKRKMEIEVMQLCSILEATSD 463
              R     ++     L ++LE   D
Sbjct: 335 PQQREMLETLKDSGRSLAALLENVLD 360


>gi|315285841|gb|EFU45281.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           MS 110-3]
 gi|315298047|gb|EFU57316.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           MS 16-3]
          Length = 593

 Score =  288 bits (736), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 83/371 (22%), Positives = 171/371 (46%), Gaps = 28/371 (7%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            + +         I+E  +DG+  I+R+G + + N A   + GY   +++ +P+++    
Sbjct: 239 AQALRETRTLNDLIIENAADGVIAIDRQGDVTTMNPAAEVITGYQRHELVGQPYSMLF-- 296

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMH 559
              +     + + L                ++ + + L +   ++  +        +   
Sbjct: 297 -DNTQFYSPVLDTLEHGTEHV-ALEISFPGRD-RTIELSVTTSRIHNTHGEMIGALVIFS 353

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           D++  K+ + +++ A+++A        + +A V+HE+R PLTAI G+ ++++ Q   P+ 
Sbjct: 354 DLTARKETQRRMAQAERLAT-----LGELMAGVAHEVRNPLTAIRGYVQILRQQTRDPI- 407

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
              + EY + + +  + +  ++  LL+ S+    +    ++ VSL+  V E + LVQ   
Sbjct: 408 ---HQEYLSVVLKEIDSINKVIQQLLEFSRPRHSQ----WQQVSLNALVEETLVLVQTAG 460

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
            + R+   +   N +  I AD   +KQ+ LNIL NA+    + G+I I T   S+ +  +
Sbjct: 461 VQARVDFISELDNELSPINADRELLKQVLLNILINAVQAISARGKIRIRTWQYSDSQQAI 520

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            + D G G+     +K   PF     S      GTGLGL L++ +++A+ G   + S P 
Sbjct: 521 SIEDNGSGIDLSLQKKIFDPFFTTKAS------GTGLGLALSQRIINAHQGDIRVASLPG 574

Query: 800 KGTLIEIIFPL 810
            G    +I P+
Sbjct: 575 YGATFTLILPI 585



 Score = 40.4 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/117 (10%), Positives = 37/117 (31%), Gaps = 6/117 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G +  ++       G    +++G     +    +    + + D L+          
Sbjct: 263 IDRQGDVTTMNPAAEVITGYQRHELVGQPYSMLF--DNTQFYSPVLDTLEHGTEHVALEI 320

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
            +P     + + +  +   I++ + E  G     I        + +    + ++  +
Sbjct: 321 SFPGRDRTIELSVTTS--RIHNTHGEMIGA--LVIFSDLTARKETQRRMAQAERLAT 373


>gi|254713498|ref|ZP_05175309.1| histidine kinase [Brucella ceti M644/93/1]
 gi|254716146|ref|ZP_05177957.1| histidine kinase [Brucella ceti M13/05/1]
          Length = 859

 Score =  288 bits (736), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 131/724 (18%), Positives = 263/724 (36%), Gaps = 49/724 (6%)

Query: 110 AFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN--TWYGKTTLWPIEGTNLYVPIDLAALP 167
              ++G                  G  L+ Q+        +    +     + ++     
Sbjct: 150 RADVVGQLPDACGAPQDRPAFLAFGRWLRPQSVTALERAISTLREQARAFDLTVETVNGS 209

Query: 168 IYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ 227
           +   +   SG  GF +    +     +A    L+ +   L +  +    +          
Sbjct: 210 LLDVHGRTSG--GFAVA-CFQSLQGVQAERASLEAQNRELADRIELMRRLLDRIEQPAWL 266

Query: 228 QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287
           +     +   N   +     A+    + +E   L  ++     E++ F    + +     
Sbjct: 267 RDGNGRIEWVNLAYAQAVDMANASQ-VISEGRELFGAQARQRLERDRFAEPVVQEQLTAV 325

Query: 288 YFGTLQ--------NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG 339
             G  +          S             ++            ET+D+      ++   
Sbjct: 326 VHGDRRVFDVIDVSAESGSVGLGFDLTEVQAVRDELSRTLKSHAETLDQLSTAVAIFDPE 385

Query: 340 -NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398
             L + N +F+ L     V  +E     + + D  +       +P      D    A  A
Sbjct: 386 MKLQFFNQAFVKLWGL-DVAWLETRPSNTLIFDRLRAEGKLPEQPEWRKWKDSLLSAYRA 444

Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI- 457
                    E    M  +P  +  +   N    G      +    K ++E     L  + 
Sbjct: 445 V--------EPEEHMWHLPDTRTMRVVANPHPQGGVTWFFENMTEKFELEGRYNTLIKVQ 496

Query: 458 ---LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYL 513
              L+  ++ +A+   +G +  +N + + L+  P E +      ++  +       +   
Sbjct: 497 GETLDHLAEAVAVYGSDGRLRLSNPSFAALWSLPSEMVREGTHISIIAKLCNQRGGDGLW 556

Query: 514 TEILSLDLRQTLEKITL---GSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570
            + +S       ++          +  +LS  ++           LT  D+++  + +  
Sbjct: 557 EDFVSTVTGFLDQRDGRMGQVELSDGAILSFAVVPLP---KGQTMLTFIDVTDTVRVERA 613

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           L    +  E     K+DF+  VS+E+R+PLT IIGF+E+++   FG L N R +EY ++I
Sbjct: 614 LKEKNEALELADQIKNDFVQHVSYELRSPLTNIIGFTELLQTPAFGSL-NERQLEYLDHI 672

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
             S +++L IVND+LD++ +++G M L    VS+ EA+S A S V     +  I +    
Sbjct: 673 STSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEAISAAASRVSERLRDHNIGLDVDI 732

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
           A+++    AD   V+Q+  N+LSNA+++ P G  I++        +V+  V D G GM +
Sbjct: 733 ADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVLQVA-RDGADVVFAVHDDGHGMPS 791

Query: 751 YELEKAMKPFGQIPN-----SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
             L+   K F   PN        +          + K+ V+ + G+  I +   +GT + 
Sbjct: 792 EVLDTVFKRFQSYPNGGRRRGAGLGLA-------IVKSFVELHGGRVEIDTGEERGTTVI 844

Query: 806 IIFP 809
             FP
Sbjct: 845 CRFP 848


>gi|91227847|ref|ZP_01262020.1| sensor histidine kinase/response regulator [Vibrio alginolyticus
           12G01]
 gi|91188357|gb|EAS74653.1| sensor histidine kinase/response regulator [Vibrio alginolyticus
           12G01]
          Length = 932

 Score =  288 bits (736), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 82/252 (32%), Positives = 133/252 (52%), Gaps = 10/252 (3%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  AKK A++ +  KS+FLA +SHE+RTPL  +IGF+  +   +         ++Y   
Sbjct: 276 ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLSN----SQMDYLQT 331

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I++S N +L+I+ND+LD SK+E+GK+ L   P    E++ E I+L    A+EK + I   
Sbjct: 332 IEKSANNLLNIINDILDFSKLEAGKLALENIPFDFRESLEEVINLQATSAHEKGLEITLK 391

Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT----SNEEVILRVRDT 744
               IP  ++ D   ++QI  N++ N+I FT  G  I +S         + E+   VRDT
Sbjct: 392 VDPKIPPGLVGDPLRIQQILTNLVGNSIKFTERG-NIDVSVEMRSQSGDSVELQFMVRDT 450

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G++  +  +  + F Q   S   R  GTGLGL + + +V    G+  + S   +G+  
Sbjct: 451 GIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTF 510

Query: 805 EIIFPLYDTSHP 816
                L+ T  P
Sbjct: 511 WFTVRLHSTEMP 522


>gi|110634091|ref|YP_674299.1| multi-sensor hybrid histidine kinase / cell cycle control histidine
           kinase CckA [Mesorhizobium sp. BNC1]
 gi|110285075|gb|ABG63134.1| cell cycle control histidine kinase CckA [Chelativorans sp. BNC1]
          Length = 866

 Score =  288 bits (736), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 105/669 (15%), Positives = 212/669 (31%), Gaps = 59/669 (8%)

Query: 178 FRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP------- 230
             G G +  + +     A     D+      +       V   K  I    S        
Sbjct: 62  MIGVGYLFASAIGLIQMARRSSGDELSRSFVDSMPEGLLVADTKGRILYANSAYAQLTGA 121

Query: 231 --PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288
                ++    + S     A   + L          +      +             + +
Sbjct: 122 GSATDVKAIEALLSDNTEAAPTLERLAAGLRDGKAGDGEFRLSRPIRPGAEPGARWYRVW 181

Query: 289 FGTLQNNS----KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFY 343
               +         +++     +  +    F        + +D+ P  FF     G + Y
Sbjct: 182 ARIFKVPGHRMPLSAWQITDISSERAEQERFFLDLQKAIDHLDQAPAGFFAADADGRITY 241

Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403
            N +          + +     L+ ++    ++   A     +        +A   L   
Sbjct: 242 LNATLAEWLGVDLANFVPGQISLAQIVAGDGMALVQA-----VKAEQGEWRSAVIDLDLA 296

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
               E  L + F+      +     P   I         +   +    ++      +T  
Sbjct: 297 TMRGE-VLPVRFLHRVSGLRDSSPGPTRTIVLNRTLGEDSSADLRASEVRFTRFFNSTPM 355

Query: 464 GIAIINREGIILSTNRAVSKLFG--YPVEDILRK-PFTVFLEQNTPSVMNHYLTEILSLD 520
            IA +++EG IL TN     LF      + + R+    + + +         L +     
Sbjct: 356 AIASVDQEGRILRTNAPFLSLFSTVVDRDAVDRRIRLDMVMHKRDREAFALALEKA-KQR 414

Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPF----SSCYSLTMHDISEWKQEKNKLSHAKK 576
                   T+    EE+ L   +     P          +   + +E K  + +++ ++K
Sbjct: 415 QADISPIDTVLPDNEERHLRFYVNAVADPGGEAAEEAAIVYAVETTEQKALEAQMAQSQK 474

Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
           +              ++H+    LTAII  S+++         +P + +  N I ++ N 
Sbjct: 475 M-----QAVGQLAGGIAHDFNNVLTAIIMASDLLLTNHRP--SDPSFPDIMN-IKQNANR 526

Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696
              +V  LL  S+    +  L  E ++L + +++ I ++        + +      ++  
Sbjct: 527 AASLVRQLLAFSR----RQTLRPEVLNLTDVLAD-IRMLLSRLVGNDVSLSVEHGQDLWP 581

Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTT--------------HTSNEEVILRVR 742
           + AD+   +Q+ +N+  NA    P GGQ+ I T                   + V++ V 
Sbjct: 582 VKADIGQFEQVIVNLAVNARDAMPEGGQLKIRTRNVTAEDCAKYPYRELQPADYVVVEVE 641

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG G+     +K  +PF          G+GTGLGL +   +V    G  Y  S   KGT
Sbjct: 642 DTGTGIAPDVQKKIFEPFFTTK----EVGKGTGLGLSMVYGIVKQTGGFIYCDSEVGKGT 697

Query: 803 LIEIIFPLY 811
              I  P +
Sbjct: 698 TFRIFLPRH 706



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 41/384 (10%), Positives = 98/384 (25%), Gaps = 24/384 (6%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK------RQNTW 143
           D  G +   +    +  G  +   +  +  +     + +    +  L          +  
Sbjct: 103 DTKGRILYANSAYAQLTGAGSATDV--KAIEALLSDNTEAAPTLERLAAGLRDGKAGDGE 160

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
           +  +               + A  I+           + I  ++    +       L K 
Sbjct: 161 FRLSRPIRPGAEPGARWYRVWAR-IFKVPGHRMPLSAWQITDISSERAEQERFFLDLQKA 219

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPP--HLRMKNKVSSL--TEYYAHKDDVLKTEKY 259
             HL +   G  + + +    +   +      + + N V            D +   +  
Sbjct: 220 IDHLDQAPAGFFAADADGRITYLNATLAEWLGVDLANFVPGQISLAQIVAGDGMALVQAV 279

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKK--QYFGTLQNNSKESFE--YLSHRNHPSLSAYF 315
                E  S     D  T+       +       L+++S        L+       SA  
Sbjct: 280 KAEQGEWRSAVIDLDLATMRGEVLPVRFLHRVSGLRDSSPGPTRTIVLNRTLGEDSSADL 339

Query: 316 DEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLT-KYKSVDDIEIAGGLSTLLDAP 373
              E       +  P+    V   G +   N  FL L       D ++    L  ++   
Sbjct: 340 RASEVRFTRFFNSTPMAIASVDQEGRILRTNAPFLSLFSTVVDRDAVDRRIRLDMVMHK- 398

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
               +     + L ++ +     S     +  N E  L                      
Sbjct: 399 ---RDREAFALALEKAKQRQADISPIDTVLPDNEERHLRFYVNAVADPGGEAAEEAAIVY 455

Query: 434 EPEDVDTRINKRKMEIEVMQLCSI 457
             E  + +  + +M  +  ++ ++
Sbjct: 456 AVETTEQKALEAQM-AQSQKMQAV 478



 Score = 45.0 bits (105), Expect = 0.048,   Method: Composition-based stats.
 Identities = 40/432 (9%), Positives = 107/432 (24%), Gaps = 43/432 (9%)

Query: 79  IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK 138
                 F +  DA G +  ++  L + +G      +  ++  ++ I+  D    +  +  
Sbjct: 224 DQAPAGF-FAADADGRITYLNATLAEWLGVDLANFVPGQIS-LAQIVAGDGMALVQAVKA 281

Query: 139 RQNTWYGKTTLWPI---EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA 195
            Q  W        +    G  L V        +   +   +      IV    +  D  A
Sbjct: 282 EQGEWRSAVIDLDLATMRGEVLPVRFLHRVSGLRDSSPGPTRT----IVLNRTLGEDSSA 337

Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP-------PHLRMKNKVSSLTEYYA 248
             +  + +F+          +   ++  I    +P              ++   L     
Sbjct: 338 DLRASEVRFTRFFNSTPMAIASVDQEGRILRTNAPFLSLFSTVVDRDAVDRRIRLDMVMH 397

Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
            +D              ++ +   +     +  +   + Y   + +   E+ E  +    
Sbjct: 398 KRDREAFALALEKAKQRQADISPIDTVL-PDNEERHLRFYVNAVADPGGEAAEEAAIVYA 456

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
              +        +      +        + G     N     +     +  +        
Sbjct: 457 VETTEQKALEAQMAQS---QKMQAVGQLAGGIAHDFNNVLTAIIMASDL-LLTNHRPSDP 512

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
                     NA +   L R           L   +        +         +   + 
Sbjct: 513 SFPDIMNIKQNANRAASLVRQL---------LAFSRRQTLRPEVLNLTDVLADIRMLLSR 563

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSIL--------EATSDGIAIINREGIILSTNRA 480
                    V+   +   ++ ++ Q   ++        +A  +G      +  I + N  
Sbjct: 564 LVGNDVSLSVEHGQDLWPVKADIGQFEQVIVNLAVNARDAMPEG-----GQLKIRTRNVT 618

Query: 481 VSKLFGYPVEDI 492
                 YP  ++
Sbjct: 619 AEDCAKYPYREL 630


>gi|284035951|ref|YP_003385881.1| GAF sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
 gi|283815244|gb|ADB37082.1| GAF sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
          Length = 1131

 Score =  288 bits (736), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 80/265 (30%), Positives = 138/265 (52%), Gaps = 15/265 (5%)

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
            +  L+   +  E  S +KS FLA +SHE+RTPL +++  ++++ + +   L   + IEY
Sbjct: 437 ARQSLALKARELEVTSQYKSAFLANMSHELRTPLNSVLILAKLLADNKPDNLT-AKQIEY 495

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
           A  I RSGN +L ++ND+LD++KIE+G + +  E V +   V +   L  + A EK++ +
Sbjct: 496 ATIIHRSGNDLLTLINDILDLAKIEAGHITVLRESVPVKSIVRDLTQLFTVVAEEKKVQL 555

Query: 687 RTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT------------- 732
            T    ++P  IL D   ++QI  N+LSNA  FTP  G+I +S +               
Sbjct: 556 ITKLHESVPAEILTDRLRIEQILKNLLSNAFKFTPRDGRITLSLSVETSFPKITRQELRK 615

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
               + + V DTG+G+   + +   + F Q+  S   +  GTGLGL +++ ++    G+ 
Sbjct: 616 EKSLLAIAVSDTGIGIPADKQQLIFEAFQQVDGSTSRKYGGTGLGLSISRELIKRLGGEI 675

Query: 793 YIFSTPAKGTLIEIIFPLYDTSHPH 817
            + S   KG+   +  PL  +  P 
Sbjct: 676 TLHSEEGKGSTFTLWLPLSLSVTPQ 700


>gi|284166092|ref|YP_003404371.1| multi-sensor signal transduction histidine kinase [Haloterrigena
            turkmenica DSM 5511]
 gi|284015747|gb|ADB61698.1| multi-sensor signal transduction histidine kinase [Haloterrigena
            turkmenica DSM 5511]
          Length = 1064

 Score =  288 bits (736), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 77/641 (12%), Positives = 210/641 (32%), Gaps = 69/641 (10%)

Query: 207  LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS-- 264
            + +     + +     ++   + P    R    +          ++   +  +       
Sbjct: 455  VLDADGEITRINDRAIELLGVEKPETFSREDRLLYDEDGRRLSAEEYPSSRAFATGEPIY 514

Query: 265  -EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH-PSLSAYFDEGENLT 322
                 +   E     +  ++        + ++       ++       L     E E+  
Sbjct: 515  DRVLRIERPEGGEDGDGERHWLSVSAAPIADDDGTIDRVVTAVEDVTDLKERERELESEL 574

Query: 323  PETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
             E   +    F+         + N    +L      D +    G           + + +
Sbjct: 575  REVFGRVSDAFYAVDEEYRFTHVNERAAVLLGVDEDDLLGRRLG-------DVYPETDEV 627

Query: 382  KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
            + +               + T +       +     + +A  +P     +    +  + +
Sbjct: 628  EQIRNR--------FDEAMETQESVGLEHYSELLGFWLEATIYPSESGVSVYFRDVTERK 679

Query: 442  INKRKMEIEVMQLCSILEATSDGIAIINREGI-ILSTNRAVSKLFGYPVEDILRK--PFT 498
              ++++     +  ++ E   + + +   +G  +L  N     ++G   E +      F 
Sbjct: 680  EREQELRESEAKFRTLAENLDEIVWMSTPDGEEMLYINPVYEDVWGRSRESLYDDLNAFL 739

Query: 499  VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYS 555
              +  +  + +      +         ++       +  +  +      +          
Sbjct: 740  EAIHPDDRARVREAYAALPETA----YDEEFRVVRPDGAVRWVHAQAVPVCNDGEIVRIV 795

Query: 556  LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
                DI++ ++        ++  E  +     F   VSH+++ PL  I  + + +   R+
Sbjct: 796  GIATDITDRRE-------YRRKLEASNERLEQFAYAVSHDLQEPLRMITSYLQ-LLESRY 847

Query: 616  GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
                +    E+  +       + +++  LL+ S++ +    L  EPV L+  V E ++ +
Sbjct: 848  ADELDEDAAEFIEFAVDGAERMREMIEGLLEYSRVTTRGDPL--EPVDLERVVDEVLADL 905

Query: 676  QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT-PSGGQIIISTTHTS- 733
            Q    ++   I      ++PR+  D+  ++Q+  N++ NAI ++     QI I+      
Sbjct: 906  QFRIEDENAEISIE---SLPRVEGDIDQLRQVFQNLVDNAIEYSGDEPPQIEITAERREV 962

Query: 734  ----------------------NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
                                  ++E ++ V D G+G+   + ++  + F ++    +   
Sbjct: 963  SRAAADGPADPNPRADGIAAESDDEWVISVADEGIGIDPEDTDRIFEVFERLH--TREEH 1020

Query: 772  EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
            EGTG+GL L + +V+ + G+ ++ S P +G       P  D
Sbjct: 1021 EGTGIGLALCQRIVERHGGEIWVESEPGEGATFSFTLPAAD 1061



 Score = 94.7 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 48/532 (9%), Positives = 135/532 (25%), Gaps = 55/532 (10%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH-IDPNNHIGDLLKRQNTWY 144
            + +DA G +  +++ +    G    ++IG  +  + D          I + L       
Sbjct: 36  LYQLDADGTVVAVNDVIVDRTGYARDELIGAHVSRILDADDVARVERGIREGLSADRDVA 95

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFG-IVHVNRVDNDPRALGKRLDKK 203
               +         VP +L   P+   + +F G  G    V   R   +         + 
Sbjct: 96  SVFEVALETADGDRVPTELRVNPLL-EDGDFRGTVGVARDVTDRRRSQERAETAIESYET 154

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
            + + +       V  + +D+             ++ + +        +     +     
Sbjct: 155 ITTVLDEADVGVFVLDDSFDVAWADETAGEYFGFDRDAVIGRDKRELIEETIRHRVADGD 214

Query: 264 SEESSL-------PEQEDFH-----TINLNQYTKKQYFGTLQN----------------- 294
           +   ++          E F        +  +   +     +++                 
Sbjct: 215 AFADTVLATYEDNSYDERFDCHVTAGSDGEERWLEHRSRPIESGRYAGGRIELYYDVTNR 274

Query: 295 ------NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG----NLFYA 344
                   + +          S  A  +   +   + +       ++Y            
Sbjct: 275 HRRATQLRRLNEAVSEWLEESSREAVAERATDHLRDILGMTLNGIYLYDADAPALRPASW 334

Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
             +   L     +       G++  +        +A         D      S  +  I 
Sbjct: 335 TEATERLLG--DLPTFGPNEGIAWRVFESGEPAFHADVSTAPDAYDPDTPIGSEMILPIG 392

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
            +    ++                          D   ++R++E E      IL+    G
Sbjct: 393 DHGVAFISSAERDAFDEGDRMLARVVASSLEATFDRLRHERRLERERDLTDRILDTIPAG 452

Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL--TEILSLDLR 522
             +++ +G I   N    +L G    +   +   +  +++   +       +   +    
Sbjct: 453 GLVLDADGEITRINDRAIELLGVEKPETFSREDRLLYDEDGRRLSAEEYPSSRAFATGEP 512

Query: 523 -----QTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWK 565
                  +E+   G   + +   L +    +             + D+++ K
Sbjct: 513 IYDRVLRIERPEGGEDGDGERHWLSVSAAPIADDDGTIDRVVTAVEDVTDLK 564



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 15/145 (10%), Positives = 50/145 (34%), Gaps = 7/145 (4%)

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
                  +  D       +     +  +++    DG+  ++ +G +++ N  +    GY 
Sbjct: 4   RAGERGRDFWDDADETTALR----RYRTLVNTIDDGLYQLDADGTVVAVNDVIVDRTGYA 59

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            ++++    +  L+ +  + +   + E LS D            T +   +   + +  L
Sbjct: 60  RDELIGAHVSRILDADDVARVERGIREGLSADRDVASVFEVALETADGDRVPTELRVNPL 119

Query: 549 PFSS---CYSLTMHDISEWKQEKNK 570
                         D+++ ++ + +
Sbjct: 120 LEDGDFRGTVGVARDVTDRRRSQER 144



 Score = 65.4 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 38/385 (9%), Positives = 95/385 (24%), Gaps = 38/385 (9%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH--IDPNNHIGDLLKRQNTWY 144
           + +D       ++E     +G     ++G RL DV           N   + ++ Q +  
Sbjct: 586 YAVDEEYRFTHVNERAAVLLGVDEDDLLGRRLGDVYPETDEVEQIRNRFDEAMETQESVG 645

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI-VHVNRVDNDPRALGKRLDKK 203
            +          L   ++    P  S         G  +         +     +  + K
Sbjct: 646 LEHYS-----ELLGFWLEATIYPSES---------GVSVYFRDVTERKEREQELRESEAK 691

Query: 204 FSHLHEIKKGHSSV---EKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK--DDVLKTEK 258
           F  L E       +   + E+    +        R +  +      +      D     +
Sbjct: 692 FRTLAENLDEIVWMSTPDGEEMLYINPVYEDVWGRSRESLYDDLNAFLEAIHPDDRARVR 751

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
                  E++  E+      +            + N+  E    +      +    +   
Sbjct: 752 EAYAALPETAYDEEFRVVRPDGAVRWVHAQAVPVCND-GEIVRIVGIATDITDRREYRRK 810

Query: 319 ENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
              + E +++       +          S+L L + +  D+++              +  
Sbjct: 811 LEASNERLEQFAYAV-SHDLQEPLRMITSYLQLLESRYADELDE------------DAAE 857

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
                V      R  I        +    +    +                      E  
Sbjct: 858 FIEFAVDGAERMREMIEGLLEYSRVTTRGDPLEPVDLERVVDEVLADLQFRIEDENAEIS 917

Query: 439 DTRINKRKMEIEVMQLCSILEATSD 463
              + +  +E ++ QL  + +   D
Sbjct: 918 IESLPR--VEGDIDQLRQVFQNLVD 940



 Score = 64.7 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 35/283 (12%), Positives = 87/283 (30%), Gaps = 19/283 (6%)

Query: 318 GENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
                   V+      + + + G +   N   +  T Y   + I     +S +LDA  ++
Sbjct: 21  ALRRYRTLVNTIDDGLYQLDADGTVVAVNDVIVDRTGYARDELIG--AHVSRILDADDVA 78

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
                    L             L T   +R  +            +  +     G+  +
Sbjct: 79  RVERGIREGLSADRDVASVFEVALETADGDRVPTEL----RVNPLLEDGDFRGTVGVARD 134

Query: 437 DVDTRINKRKMEIEVMQLCSI---LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
             D R ++ + E  +    +I   L+    G+ +++    +   +    + FG+  + ++
Sbjct: 135 VTDRRRSQERAETAIESYETITTVLDEADVGVFVLDDSFDVAWADETAGEYFGFDRDAVI 194

Query: 494 RKPFTVFLEQNTPSVMNH-------YLTEILSLDLRQTLE-KITLGSTKEEKLLSLRIII 545
            +     +E+     +          L         +  +  +T GS  EE+ L  R   
Sbjct: 195 GRDKRELIEETIRHRVADGDAFADTVLATYEDNSYDERFDCHVTAGSDGEERWLEHRSRP 254

Query: 546 KKL-PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
            +   ++       +D++   +   +L    +   +     S 
Sbjct: 255 IESGRYAGGRIELYYDVTNRHRRATQLRRLNEAVSEWLEESSR 297


>gi|302791846|ref|XP_002977689.1| sensory histidine protein kinase [Selaginella moellendorffii]
 gi|300154392|gb|EFJ21027.1| sensory histidine protein kinase [Selaginella moellendorffii]
          Length = 823

 Score =  288 bits (736), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 68/266 (25%), Positives = 129/266 (48%), Gaps = 9/266 (3%)

Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                 L +   ++  +   +L+ ++  AE+ S  KSDFLA +SHEIRTP+  I+G S +
Sbjct: 362 NERLEVLVLQRTTQLLKANEELTASRTAAEQASQAKSDFLANMSHEIRTPIHGILGMSAL 421

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           +              +    +    +++L ++N +LD++KIE+G+  +     +L   + 
Sbjct: 422 VLATGL----TEEQRDNMTTVKDCADMLLHLINGILDVAKIEAGRFEVELVSFNLCHVIK 477

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
             + +++  A EKR+ ++      +P +L  D   ++   LN++ NA+ FT  G  + ++
Sbjct: 478 STLHILEPRAREKRLRLKWDVDARVPTVLVGDSGKLRHCLLNLVGNALKFTHQG-YVQVT 536

Query: 729 TTHTSNE---EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
                +     ++ RV D+G+G++  +L    KPF Q   S      GTGLGL + +  V
Sbjct: 537 VAPYVDGLYPSLVFRVSDSGIGVSRDKLSNIFKPFTQADPSISRLYGGTGLGLCIVQRFV 596

Query: 786 DANMGKFYIFSTPAKGTLIEIIFPLY 811
           +   G+  + S    G+   I+ P Y
Sbjct: 597 ELMGGQICVESEYGTGSTFCILLPFY 622


>gi|265983095|ref|ZP_06095830.1| histidine kinase [Brucella sp. 83/13]
 gi|264661687|gb|EEZ31948.1| histidine kinase [Brucella sp. 83/13]
          Length = 843

 Score =  288 bits (736), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 130/724 (17%), Positives = 260/724 (35%), Gaps = 49/724 (6%)

Query: 110 AFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN--TWYGKTTLWPIEGTNLYVPIDLAALP 167
              ++G                  G  L+ Q+        +    +     + ++     
Sbjct: 134 RADVVGQLPDACGAPQDRPAFLAFGRWLRPQSVTALERAISTLREQARAFDLTVETVNGS 193

Query: 168 IYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ 227
           +   +   SG  GF +    +     +A    L+ +   L +  +    +          
Sbjct: 194 LLDVHGRTSG--GFAVA-CFQSLQGVQAERASLEAQNRELADRIELMRRLLDRIEQPAWL 250

Query: 228 QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287
           +     +   N   +           + +E   L  ++     E+  F    + +     
Sbjct: 251 RDGNGRIEWVNLAYA-HAVDMANASQVISEGRELFGAQARQRLERGRFAEPVVQEQLTAV 309

Query: 288 YFGTLQ--------NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG 339
             G  +          S             ++            ET+D+      ++   
Sbjct: 310 VHGDRRVFDVIDVSAESGSVGLGFDLTEVQAVRDELSRTLKSHAETLDQLSTAVAIFDPE 369

Query: 340 -NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398
             L + N +F+ L     V  +E     + + D  +       +P      D    A  A
Sbjct: 370 MKLQFFNQAFVKLWGL-DVAWLETRPSNTLIFDRLRAEGKLPEQPEWRKWKDSLLSAYRA 428

Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI- 457
                    E    M  +P  +  +   N    G      +    K ++E     L  + 
Sbjct: 429 V--------EPEEHMWHLPDTRTMRVVANPHPQGGVTWFFENMTEKFELEGRYNTLIKVQ 480

Query: 458 ---LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYL 513
              L+  ++ +A+   +G +  +N + + L+  P E +      ++  +       +   
Sbjct: 481 GETLDHLAEAVAVFGSDGRLRLSNPSFAALWSLPSEMVREGTHISIIAKLCNQRGGDGLW 540

Query: 514 TEILSLDLRQTLEKITL---GSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570
            + +S       ++          +  +LS  ++           LT  D+++  + +  
Sbjct: 541 EDFVSTVTGFLDQRDGRMGQVELSDGAILSFAVVPLP---KGQTMLTFIDVTDTVRVERA 597

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           L    +  E     K+DF+  VS+E+R+PLT IIGF+E+++   FG L N R +EY ++I
Sbjct: 598 LKEKNEALELADQIKNDFVQHVSYELRSPLTNIIGFTELLQTPAFGSL-NERQLEYLDHI 656

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
             S +++L IVND+LD++ +++G M L    VS+ EA+S A S V     +  I +    
Sbjct: 657 STSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEAISAAASRVSERLRDHNIGLDVDI 716

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
           A+++    AD   V+Q+  N+LSNA+++ P G  I++        +V+  V D G GM +
Sbjct: 717 ADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVLQVA-RDGADVVFAVHDDGHGMPS 775

Query: 751 YELEKAMKPFGQIPN-----SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
             L+   K F   PN        +          + K+ V+ + G+  I +   +GT + 
Sbjct: 776 EVLDTVFKRFQSYPNGGRRRGAGLGLA-------IVKSFVELHGGRVEIDTGEERGTTVI 828

Query: 806 IIFP 809
             FP
Sbjct: 829 CRFP 832


>gi|160886358|ref|ZP_02067361.1| hypothetical protein BACOVA_04368 [Bacteroides ovatus ATCC 8483]
 gi|260173508|ref|ZP_05759920.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|315921779|ref|ZP_07918019.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|156108243|gb|EDO09988.1| hypothetical protein BACOVA_04368 [Bacteroides ovatus ATCC 8483]
 gi|313695654|gb|EFS32489.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
          Length = 660

 Score =  288 bits (736), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 103/517 (19%), Positives = 194/517 (37%), Gaps = 43/517 (8%)

Query: 318 GENLTPETVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
            +NL     +   +   +Y    L    N S L     K   DI      +    + ++ 
Sbjct: 10  ADNLLHNIFNDLSVGLELYDKDGLMIDVNYSRLRSMGIKDKKDILGYNLFNYTSFSDEIK 69

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           +        +    +       RL     +      +T           E      I  +
Sbjct: 70  EQIRKGE-TVRFMAKYDFDDLCRLFPTNLSGIKFFEITVSFVHNDKS--EITNYMVITQD 126

Query: 437 DVDTR--------------INKRKMEIEVMQL-------CSILEATSDGIAIINREGIIL 475
             +                 +K+++     ++         +L   + G+A I  + I+ 
Sbjct: 127 ITERVLWQNKYDNLYEEVVRSKKELLESEQRMIHLIRQNELVLNNINSGLAYIANDYIVQ 186

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
             N ++             +P  +     T    N  +         +++    L +   
Sbjct: 187 WENISLCSKSLSYEAYKKGEPCYLTAHNRTTPCENCVMQRARKSGQVESI----LFNLDN 242

Query: 536 EKLLSLRIIIK--KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
           + ++ +       +        + + D++E +    +L  A+  AE+    KS FLA +S
Sbjct: 243 KHVIEVFATPIFNEQGDVDGVVIRVDDVTERQHMIGELEKARSRAEQSDKLKSAFLANMS 302

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HEIRTPL AI+GFS+++              E+   I+ +  L+L ++ND+LD+SKIE+G
Sbjct: 303 HEIRTPLNAIVGFSDLLM----VTEDQEEKEEFIQIINANNELLLKLINDILDLSKIEAG 358

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713
            + L +E   L    +E  + +       ++ +          +  D   + QI  N ++
Sbjct: 359 SVELKYENFDLAVYFNELAASMHRRVVNPQVRLVPVNPYETCTVRLDKNRLAQILTNFVT 418

Query: 714 NAIHFTPSGGQIIISTTHTS-NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           NAI +T  G    I   +   +E + L VRDTG+G+   + +K    F ++        +
Sbjct: 419 NAIKYTSKG---TIEMGYEKIDENIRLYVRDTGIGIPEDKKDKVFHRFEKLD----EFAQ 471

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GTGLGL + KA+V+A  G+    S   KG+L   + P
Sbjct: 472 GTGLGLSICKAIVEACRGEIGFESEFDKGSLFWAVLP 508


>gi|89075083|ref|ZP_01161524.1| putative sensor histidine kinase/response regulator [Photobacterium
           sp. SKA34]
 gi|89049170|gb|EAR54735.1| putative sensor histidine kinase/response regulator [Photobacterium
           sp. SKA34]
          Length = 929

 Score =  288 bits (736), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 86/341 (25%), Positives = 157/341 (46%), Gaps = 19/341 (5%)

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
           F Y +   + +P +  +      V++      L + +   L             +++ + 
Sbjct: 191 FAYRLMQDVTQPISHMIS-----VVDRIRRGHLDIRIEGRLLGELDTLKNGINAMAISLS 245

Query: 545 IKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
              +           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTPL
Sbjct: 246 EYHIEMQQSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPL 305

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
             +IGF+  +   +     N    +Y   I+ S N +L I+ND+LD SK+E+GK+ L   
Sbjct: 306 NGVIGFTRQMLKTKL----NTSQKDYLLTIENSANNLLTIINDILDFSKLEAGKLLLENI 361

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFT 719
           P    +++ E + L+   A+EK + +     + IP  ++ D   ++Q+  N++ NA+ FT
Sbjct: 362 PFDFTDSLDEVMRLLAPSAHEKGLELTLKIDDRIPAGLIGDPLRIQQVVTNLIGNAVKFT 421

Query: 720 PSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
             G  I +S    S+ +    +   VRDTG+G++  +  +  + F Q   S   R  GTG
Sbjct: 422 EHG-NIDVSVELKSDVDNNIALQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTG 480

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           LGL + + +V    G+  + S   +G+       +  T  P
Sbjct: 481 LGLVITQKLVSQMGGEVSLTSRLHQGSTFWFTIQMNKTDLP 521


>gi|94498447|ref|ZP_01305004.1| probable two-component sensor histidine kinase/response regulator
           hybrid protein [Sphingomonas sp. SKA58]
 gi|94422095|gb|EAT07139.1| probable two-component sensor histidine kinase/response regulator
           hybrid protein [Sphingomonas sp. SKA58]
          Length = 653

 Score =  288 bits (736), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 88/501 (17%), Positives = 171/501 (34%), Gaps = 37/501 (7%)

Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
           F + + G +   N        Y+  + I      S        +       +   + +  
Sbjct: 26  FMLDTDGRIASWNAGARRFKGYEPDEIIGQ--HFSRFYTPQDQAAGIPAAALATAQQEGR 83

Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
                A    ++ +         +     +     +    +  +  + R     +     
Sbjct: 84  ---FEAEGWRVRKDG-THFWANVVIDPIRDTDGRLLGFAKVTRDLTERRAADEALRKSEE 139

Query: 453 QLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
           +   ++E+ SD  I +++  G I S N    +  GY  ++IL K F +F  ++       
Sbjct: 140 RFRLLVESVSDYAIYMLDPVGTITSWNMGAERAKGYKTDEILGKNFALFYSEDDRIAGLP 199

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQE 567
               + S +     E       K+        +I  +  S+   +       D++E ++ 
Sbjct: 200 S-RALHSAERDGRFESEGWRIRKDGSRFWANAVIDAIRDSAGQLIGFAKVTRDLTERRES 258

Query: 568 KNKLSHAKKIAEKESS--HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           +  L  A+    +             V+H+    L  I+G  E +   R    G+     
Sbjct: 259 QLALEDARAAIMQAQKMDAIGKLTGGVAHDFNNLLAVIVGSLE-LARMRLAKGGD--IER 315

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           + +    + +    +   +L  ++    +  L  + V     V     ++Q       I+
Sbjct: 316 FLDNAMAAADRGATLTQRMLAFAR----RQELKLQSVDCLALVHGMTDMLQSSV-GPGII 370

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT-----------HTSN 734
           I + F  ++    AD   ++   LN++ NA    P GG+I+IS +             S 
Sbjct: 371 IDSLFPKSLAPAHADTGQLEMALLNLVVNARDAMPDGGRILISASEMLTAQGTVPGLASG 430

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
             V L V D G GM +  LE+A +PF          G+GTGLGL +    V+   G   I
Sbjct: 431 TYVKLSVIDEGQGMDSATLEQAREPFFTTKG----VGKGTGLGLSMVHGFVEQCGGALTI 486

Query: 795 FSTPAKGTLIEIIFPLYDTSH 815
            ST   GT + +  P+     
Sbjct: 487 ESTVGAGTTVSLWLPVSQEEE 507



 Score = 85.8 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/412 (9%), Positives = 111/412 (26%), Gaps = 30/412 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + +D  G +   +    +  G    ++IG                    L   Q     
Sbjct: 25  IFMLDTDGRIASWNAGARRFKGYEPDEIIGQHFSRFYTPQDQAAGIPAAALATAQQEGRF 84

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +   W +     +   ++   PI   +    GF    +              ++ +++F 
Sbjct: 85  EAEGWRVRKDGTHFWANVVIDPIRDTDGRLLGFAK--VTRDLTERRAADEALRKSEERFR 142

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLR---MKNKVSS--LTEYYAHKDDVLKTEKYP 260
            L E    ++    +     +  +           +++       +Y+  D +       
Sbjct: 143 LLVESVSDYAIYMLDPVGTITSWNMGAERAKGYKTDEILGKNFALFYSEDDRIAGLPSRA 202

Query: 261 LLTSEESSLPEQEDFH-TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
           L ++E     E E +    + +++        +++++ +   +       +         
Sbjct: 203 LHSAERDGRFESEGWRIRKDGSRFWANAVIDAIRDSAGQLIGFAKVTRDLTERRESQLAL 262

Query: 320 NLTPETVDKCP--IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS-TLLDAPKLS 376
                 + +          + G     N    ++     +  + +A G          ++
Sbjct: 263 EDARAAIMQAQKMDAIGKLTGGVAHDFNNLLAVIVGSLELARMRLAKGGDIERFLDNAMA 322

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
             +    +           A AR   ++    + LA+     +                 
Sbjct: 323 AADRGATLTQRML------AFARRQELKLQSVDCLALVHGMTDMLQSSVGPGIIIDSLFP 376

Query: 437 DVDTRINKRKMEIEVMQLCSIL---EATSDGIAIINREGIILSTNRAVSKLF 485
                 +    ++E+  L  ++   +A  DG       G IL    + S++ 
Sbjct: 377 KSLAPAHADTGQLEMALLNLVVNARDAMPDG-------GRILI---SASEML 418



 Score = 83.5 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 51/147 (34%), Gaps = 6/147 (4%)

Query: 448 EIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
           E    +   ++++ +D  I +++ +G I S N    +  GY  ++I+ + F+ F      
Sbjct: 7   EYSGNRFELLVQSVTDYAIFMLDTDGRIASWNAGARRFKGYEPDEIIGQHFSRFYTPQDQ 66

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDIS 562
           +          +       E       K+       ++I  +  +    L       D++
Sbjct: 67  AAGIPAAALATAQ-QEGRFEAEGWRVRKDGTHFWANVVIDPIRDTDGRLLGFAKVTRDLT 125

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFL 589
           E +     L  +++         SD+ 
Sbjct: 126 ERRAADEALRKSEERFRLLVESVSDYA 152


>gi|303240209|ref|ZP_07326729.1| histidine kinase [Acetivibrio cellulolyticus CD2]
 gi|302592300|gb|EFL62028.1| histidine kinase [Acetivibrio cellulolyticus CD2]
          Length = 811

 Score =  288 bits (736), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 97/538 (18%), Positives = 198/538 (36%), Gaps = 31/538 (5%)

Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLL 350
           ++N ++ +   L+ +     +    E        +       FV S    +  AN     
Sbjct: 254 VENATEVTERVLNRQKIEEQNKLIIEQNKKLEAILHNTANGVFVLSKDNRVHIANGEVRK 313

Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
                   D    G +       +  + ++             +     L       EN+
Sbjct: 314 Y--IYDYADYRNKGDIK--YYDSESREMSSDNLPSSKALRGETV---KNLFVTVKTPENT 366

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470
           +          ++            +  +   +K K++ + MQL +I+   SD I I ++
Sbjct: 367 INTVGCARPIFDENGNVESAVLYIQDVTELVQSKEKIQKQDMQLEAIINNMSDAIFIFDK 426

Query: 471 EGIILSTNRAV---SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
           +   +  N++             DI+        + +  ++ +  +  +     ++ ++K
Sbjct: 427 DYKCILKNQSAHNFEAYLESNFYDIVNNMKYYNFDGSEIALEDTPVFLVRDG--QRVIDK 484

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAEKESS 583
           +     K+ K + + +    +           +   +IS   + +  +   ++       
Sbjct: 485 VLSIKAKQ-KDIYVGVSGTPIFDEKGNFSLGVVVCRNISTHIKFEKDMRDKQEALIVAER 543

Query: 584 H-----------KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
                       K +FL  +SHE +TPLT I    + I +     L      ++   I  
Sbjct: 544 REKEALENAIKIKDEFLTTISHEFKTPLTVINAAIQTIYSLYESELS-ENVKKHLKRIHT 602

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
           +    L +VN+L+D+SK   G + L  + V +     E I  +Q  + +K + ++     
Sbjct: 603 NYYRQLKLVNNLIDMSKYREGHIQLVRQDVDIISMTGEIIKFIQPISMQKGVYLQFDSDL 662

Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752
               +  D    ++I LN+LSNAI +TPSG  I ++ T    +  +L VRD G+G+   +
Sbjct: 663 ESKVLAIDEEKYERILLNLLSNAIKYTPSGKSIYVNITFK-GQYFVLTVRDEGLGIPIEK 721

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            E   + F ++  S     EGTG+GL L K +V A  G   + S    G+   +  P+
Sbjct: 722 HECIFEHFVKVDTSLTRLTEGTGIGLSLVKWIVSALGGSISLESEVGVGSTFAVTLPV 779


>gi|269963520|ref|ZP_06177845.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269831695|gb|EEZ85829.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 878

 Score =  288 bits (736), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 82/265 (30%), Positives = 128/265 (48%), Gaps = 16/265 (6%)

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
               + E  ++  ++   K+ A   +  KS FLA +SHEIRTPL  IIG +E++      
Sbjct: 351 VNRMMEEQNRQTEEILKTKESAISANRAKSVFLASMSHEIRTPLNGIIGMTEILSQSDL- 409

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
              +    E    ID S + +L ++ND+LD+SKIESG + L      + E V +++ L Q
Sbjct: 410 ---SDHQKEVLTDIDTSSHTLLTLLNDILDLSKIESGHLQLSLIETDIREVVYQSMILFQ 466

Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
             A  K++ +  +    IP  I+ D   +KQI +N++SNA+ FT  G  I +   +  + 
Sbjct: 467 SKATSKQLELNINLDERIPPRIMVDDHRIKQIIMNLVSNAVKFTHEG-HISVDVDYQESP 525

Query: 736 E-----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
                 +  RV DTGVG+   +L    +PF Q       +  GTGLGL + + +V    G
Sbjct: 526 TQKSVFLTFRVTDTGVGIERDKLNTIFEPFTQEDEGISRQFGGTGLGLAICRQLVAMMGG 585

Query: 791 KFYIFSTPAKGTLIEII-----FPL 810
           K    S+   GT  E        P+
Sbjct: 586 KLTATSSKGIGTSFEFSIEVEVLPI 610


>gi|265765874|ref|ZP_06093915.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|263253542|gb|EEZ25007.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 565

 Score =  288 bits (736), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 97/521 (18%), Positives = 188/521 (36%), Gaps = 42/521 (8%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFF---VYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365
              ++  D+      + +D  P P     +       Y N    L +     D +     
Sbjct: 61  RKSASADDDYRRFLFDILDNLPFPIMVKDIQEQFKYTYWNKESELQSGISRKDAVG--FS 118

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
              +    +      I   ++       I   A    +  + +    +       + +  
Sbjct: 119 DVDIFGEERGKQYRKIDEDLVRAG----IPYKAEERYVTADGKVHDTLVMKSIISSGKLG 174

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLC-------SILEATSDGIAIINREGIILSTN 478
           + +       E    ++ +R++     QL          L +   G+  I+R  ++    
Sbjct: 175 KWL--LVARWEITQLKMYERELLAAKEQLEGAVRKQKLALRSIDFGLIYIDRNYLVQW-- 230

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNT------PSVMNHYLTEILSLDLRQTLEKITLGS 532
               +  G     +  + +T                      E +               
Sbjct: 231 ----EETGNIKNLVSGRHYTPGTVCYRTTGQGTQPCGKCAFREAIGTGKIVRHITHVDHV 286

Query: 533 TKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
             E     +              L   DI+E  + +  L  AK+ AE+ +  KS FLA +
Sbjct: 287 DFEITATPVYDDTGNEIIGG--LLRFEDITEKLKVERMLQEAKEKAEESNRLKSAFLANM 344

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHEIRTPL AIIGFS++I              EY   +  +  L+L +++D+LD+SKIE+
Sbjct: 345 SHEIRTPLNAIIGFSDLICQTD----DAEEKEEYIRIVTSNNELLLQLIDDILDLSKIEA 400

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712
           G M+  + P  ++E + +    +Q       + I  +       I  D   + Q+ +N++
Sbjct: 401 GTMDFSYAPTDINELMEDICLQMQQKNQRPEVQIMFTEKEPGCVINTDRLRLSQVIMNLM 460

Query: 713 SNAIHFTPSGGQIIISTTH-TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           +NA+ FT  G  I +        +E+   V+DTG+G+   +  K  + F ++        
Sbjct: 461 NNAMKFTSEGS-ITLGYRLTRQKDELYFFVKDTGIGIPADQAGKVFERFVKLNTFI---- 515

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
           +GTGLGL + + +++   G   + +   KG+      P+ +
Sbjct: 516 KGTGLGLAICRVIIERLGGTIGVETREGKGSCFWFRLPVRE 556


>gi|260430672|ref|ZP_05784644.1| sensory box histidine kinase/response regulator [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260418113|gb|EEX11371.1| sensory box histidine kinase/response regulator [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 845

 Score =  288 bits (736), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 96/591 (16%), Positives = 186/591 (31%), Gaps = 50/591 (8%)

Query: 237 KNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS 296
               +   +  A   D ++     +     S L   E        +           +  
Sbjct: 34  AQVFTDFNDRRAAPSDNVQWTLSQVEVDYLSYLNALETASAAQDAENGTLDLVRRRFDLF 93

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKS 356
               + L+           D                                  L     
Sbjct: 94  YSRVDTLAQSRVFQPLRQDDRFRLPLERVTRHLNAAI----------------PLIDAPD 137

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
            +  E    L                   L  S  +  A  +    IQ            
Sbjct: 138 AELSEQLDDLKRAALEIGPH------VRTLAVSGISYFATESDQQRIQTAANLLRLAILS 191

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476
                     +     +           R +     ++ +IL  + DG+ +++ +G ++ 
Sbjct: 192 GALLLTLGAVSAYLLVVNRRATRRG---RALRQANERMNTILSTSLDGVIVVDAKGDVIE 248

Query: 477 TNRAVSKLFGYPVEDILRKPFTVFL-EQNTPSVMNHYLTEILSLDLRQTLEK---ITLGS 532
            N A   +FGY  +    +     +   +  +     +  + +      + K        
Sbjct: 249 FNPAAEAIFGYTADKARGRAIGDLIVPPHLRAAHRAGMERMQAGGDLHVVGKGRVQLEAM 308

Query: 533 TKEEKLLSLRIII--KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
             + +   + + +   +          + DIS+    + +L   +  A      K++FL 
Sbjct: 309 RADGEQFPVELALQSARAGDQEIIIGFVRDISQRVAAQQELISTRDQALAGEKAKAEFLT 368

Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650
            +SHEIRTP    +                     +   ++ SG ++L  V+ +LDI++ 
Sbjct: 369 VMSHEIRTP----LNGLLGNLTLLKNTRTTREQARFVENMEISGQILLSHVDSVLDIARF 424

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS-FANNIPRILADLRSVKQIAL 709
           E+GK+++  +P  L++ + E +      A  +   I         P + AD + ++QI L
Sbjct: 425 EAGKLSVALQPTDLNDILQEIVDGQSGNAASRGNSISWQWVGEARPCVAADAQRLRQILL 484

Query: 710 NILSNAIHFTPSGGQIIISTTHTSNEE------VILRVRDTGVGMTNYELEKAMKPFGQI 763
           N++ NAI FT   G+I I    T             R+ DTG+G+   E++     F   
Sbjct: 485 NLVGNAIKFT-ENGRISIEVEVTEPGPTAGVNIFEFRIIDTGIGIGPDEVDVIFDDFHTS 543

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
             S       TGLGL +A+    A  G+  + STP +G++  +  PL D  
Sbjct: 544 DPS-------TGLGLGIARRFARAMGGEIGVESTPEEGSVFWVRLPLQDAE 587



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/264 (10%), Positives = 63/264 (23%), Gaps = 15/264 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTW---- 143
           +DA G + E +       G  A K  G  + D+    H+        + ++         
Sbjct: 240 VDAKGDVIEFNPAAEAIFGYTADKARGRAIGDLIVPPHLRAAHRAGMERMQAGGDLHVVG 299

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
            G+  L  +       P++LA     + ++E       G V         +        +
Sbjct: 300 KGRVQLEAMRADGEQFPVELALQSARAGDQEII----IGFVRDISQRVAAQQELISTRDQ 355

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPH-----LRMKNKVSSLTEYYAHKDDVLKTEK 258
                + K    +V   +                  R   + +   E       +L +  
Sbjct: 356 ALAGEKAKAEFLTVMSHEIRTPLNGLLGNLTLLKNTRTTREQARFVENMEISGQILLSHV 415

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
             +L        +              ++       N+      +S +            
Sbjct: 416 DSVLDIARFEAGKLSVALQPTDLNDILQEIVDGQSGNAASRGNSISWQWVGEARPCVAAD 475

Query: 319 ENLTPETVDKC-PIPFFVYSHGNL 341
                + +            +G +
Sbjct: 476 AQRLRQILLNLVGNAIKFTENGRI 499



 Score = 45.8 bits (107), Expect = 0.033,   Method: Composition-based stats.
 Identities = 30/296 (10%), Positives = 66/296 (22%), Gaps = 39/296 (13%)

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244
            V+ +         R D +F    E     +        +          ++ +   +  
Sbjct: 96  RVDTLAQSRVFQPLRQDDRFRLPLE---RVTRHLNAAIPLIDAPDAELSEQLDDLKRAAL 152

Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
           E   H   +  +      T       +Q+   T              L      S   L 
Sbjct: 153 EIGPHVRTLAVSGISYFATE-----SDQQRIQTAANLLRLAILSGALLLTLGAVSAYLLV 207

Query: 305 HRNHPSLS-AYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEI 362
                +       +        +        V    G++   NP+   +  Y +      
Sbjct: 208 VNRRATRRGRALRQANERMNTILSTSLDGVIVVDAKGDVIEFNPAAEAIFGYTADKARGR 267

Query: 363 AGGLSTLLDAPKLSDNNAIK------------------PVMLYRSDRTCIAASARLHTIQ 404
           A G   L+  P L   +                      +   R+D         L + +
Sbjct: 268 AIG--DLIVPPHLRAAHRAGMERMQAGGDLHVVGKGRVQLEAMRADGEQFPVELALQSAR 325

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
              +  +        +             + E + TR      E    +  +++  
Sbjct: 326 AGDQEIIIGFVRDISQR---------VAAQQELISTRDQALAGEKAKAEFLTVMSH 372


>gi|159899963|ref|YP_001546210.1| integral membrane sensor hybrid histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159893002|gb|ABX06082.1| integral membrane sensor hybrid histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 791

 Score =  288 bits (736), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 97/458 (21%), Positives = 182/458 (39%), Gaps = 19/458 (4%)

Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
           ++ +IE     +    A         +     + +     A   +  +  + E++     
Sbjct: 70  ALGEIEEREHYTRYRQAFDDKRLELEQFFKNMQPNPETKTAFENVQKLSADYEDAGVAYL 129

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
              +   Q                      +++     L  I++  S+ +     E  I 
Sbjct: 130 AQIDLRIQESAPTRSTAELAAWKILDEQADQLDEATQVLSDIIDDQSEAL-----EATIT 184

Query: 476 STNRAV-SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
             N  +   L G  +  ++     V+            + +                   
Sbjct: 185 KQNGRMIVALTGRSLAILVLLSLFVYYLLGRVGNQFKLVRDGAQRFADGDFTTDIPIRRY 244

Query: 535 E--EKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
           +   +L ++   + +             I   +Q K+     + +AE+ +  KS+FLA +
Sbjct: 245 DEVGRLAAMFNTMAQTIRGQ--------IERLEQAKDHAQRLQFVAEEANRAKSNFLANM 296

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHE+RTPL AIIG+SE+++ +    LG    IE  + I  SG  +L ++ND+LD++KIES
Sbjct: 297 SHELRTPLNAIIGYSEILQEECED-LGQTAMIEDLDRIRLSGRHLLTLINDILDLAKIES 355

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712
           GK+ +  E +SL + + +  S V     +    +    A  +  +++D   ++QI +N+L
Sbjct: 356 GKVEILPEEISLPQLLHDVRSTVDPMIIKNENRLVIESAAGLLTMISDETRLRQILVNLL 415

Query: 713 SNAIHFTPSGGQIIISTT-HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           SNA  FT  G +I +          +   V D G+GM+N +L +  +PF Q   S   + 
Sbjct: 416 SNAAKFTEHG-RITLRVQPSEEEGWIDFSVHDNGIGMSNAQLSRLFQPFTQADASTTRKY 474

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            GTGLGL L++ +     G   + S    G+   +  P
Sbjct: 475 GGTGLGLALSRRLAQLLGGDIRVQSELGVGSTFSVHLP 512


>gi|311278255|ref|YP_003940486.1| multi-sensor hybrid histidine kinase [Enterobacter cloacae SCF1]
 gi|308747450|gb|ADO47202.1| multi-sensor hybrid histidine kinase [Enterobacter cloacae SCF1]
          Length = 915

 Score =  288 bits (736), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 88/332 (26%), Positives = 153/332 (46%), Gaps = 17/332 (5%)

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
           FG+ +   +  P    +               L   +   +             +++ + 
Sbjct: 194 FGWRLMRDVTGPIRNMVNTVDR-----IRRGQLDSRVEGFMLGELDMLKNGINSMAMSLA 248

Query: 545 IKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
                          D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTPL
Sbjct: 249 AYHEEMQHNVDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPL 308

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
             +IGF+ +          NP   ++ N I+RS N +L I+ND+LD SK+E+GK+ L   
Sbjct: 309 NGVIGFTRLTLKTDL----NPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILESI 364

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFT 719
           P  L  ++ E ++L+   A++K + +  +  N++P  ++ D   ++Q+  N++ NAI FT
Sbjct: 365 PFPLRNSLDEVVTLLAHSAHDKGLELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKFT 424

Query: 720 PSGGQ-IIISTTHTSNEEVILRV--RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
            SG   I++     SN +V + V  RDTG+G+   +  +  + F Q   S   R  GTGL
Sbjct: 425 ESGNIDILVEKRALSNNKVQVEVQIRDTGIGIPESDQSRLFQAFRQADASISRRHGGTGL 484

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           GL + + +V    G     S P +G+      
Sbjct: 485 GLVITQKLVKEMGGDISFHSQPNRGSTFWFHI 516


>gi|149191684|ref|ZP_01869926.1| putative histidine kinase [Vibrio shilonii AK1]
 gi|148834473|gb|EDL51468.1| putative histidine kinase [Vibrio shilonii AK1]
          Length = 1039

 Score =  288 bits (736), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 84/289 (29%), Positives = 139/289 (48%), Gaps = 18/289 (6%)

Query: 533 TKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQ--------EKNKLSHAKKIAEKESSH 584
            K    + L   I      S ++  +  ++  +Q         KN   HAK+ A + S  
Sbjct: 322 EKSTGDIPLTARIGGKDELSRFAREVERLTNEQQESQRNLLEAKNAAEHAKENAIEASKA 381

Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
           KS FLA +SHEIRTPL  +IG SEV+ +            +Y + I+ S  L+L ++ND+
Sbjct: 382 KSSFLANMSHEIRTPLNGVIGISEVLSDTDLTAT----QKDYVDTIETSSQLLLSLINDI 437

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRS 703
           LD SKIESG + ++    S+ E + +  S+V     EK I +      N+P R+LAD   
Sbjct: 438 LDFSKIESGMLQINPHSTSIRETIYDIASIVAPKVKEKGIELNVDIDQNVPFRVLADDHR 497

Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSN----EEVILRVRDTGVGMTNYELEKAMKP 759
           ++Q+ +N +SNA+ FT  G  + I   +         ++  V+D+G+G+      K  + 
Sbjct: 498 MRQVLMNFMSNAVKFTDKGS-VTIGVHYQGESNNMASLMFEVQDSGIGIDKERQSKIFEA 556

Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           F Q  +S   +  GTGLGL ++  +++   G+  + S    G+      
Sbjct: 557 FAQEDDSTTRQFGGTGLGLAISTQLIELMGGEIQLDSVKGVGSRFYFTL 605


>gi|327478874|gb|AEA82184.1| signal transduction histidine kinase [Pseudomonas stutzeri DSM
           4166]
          Length = 830

 Score =  288 bits (736), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 103/559 (18%), Positives = 199/559 (35%), Gaps = 17/559 (3%)

Query: 259 YPLLTSEESSLPEQEDF-HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
             L    E+     E   H+      ++       + + +     L+     + S     
Sbjct: 273 MALPEPGETDFGLAELTNHSYLDAIRSEMFKPEDFRLDRRPETAELAAAISGAASGVQQV 332

Query: 318 GENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
                P+ V    +    +    +      F       S         +  LL A  +  
Sbjct: 333 MLGGRPQLVAWTTVAQTGWHLLTVVDEAAVFRQTNALAS-----RYRQIGYLLIAGLVLF 387

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
                 +M  R+ +   A    +  I           + P     Q  E    +    E 
Sbjct: 388 YIGFFALMWLRARQLSQALLTPIAGISRMLGEIGLGRWRPEPLQAQIRELDEMSRHTQEI 447

Query: 438 VDT-RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
                 ++ +      +L  +LE+ ++ +   +     L    A+   FG P   +    
Sbjct: 448 GSRLAYSESERWEAQRRLELVLESATESLWEYDMANHSLRVRGAMVARFGLPSGQLSDSD 507

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----- 551
           F   +  +        +  +    L+Q  E     +        L    + L        
Sbjct: 508 FRQRIHPDDLPQALAQIERVRE-GLQQRYEAKYRFADSMGGYHWLLSRGRVLEHDPDTGA 566

Query: 552 -SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
               + T  DI   K+ + +L  A   A+  S  K   L+ +SHE+RTPL AI+GF++ +
Sbjct: 567 ARVLAGTHVDIDALKRVEEELREATLQAQAASEAKGRLLSGISHELRTPLNAILGFAQ-L 625

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
                         EY + I  +   +  ++ ++L+ S +++    L  +PV++ E + E
Sbjct: 626 MRMDCDDESQAEAAEYLDEILLASRHLNQLLGEILEWSSLQNEPAQLELQPVNVCELMRE 685

Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
              LV L   ++ + +  S  +    +LA+ R ++Q+ LN+LSNA+ +    G I +   
Sbjct: 686 CAELVSLDIQQRGLRLDLSLPDERLLVLAEPRRLRQVLLNLLSNAMKYNVPEGHISLRAE 745

Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
            + +  V L V DTG+G+   +  +  +PF ++   +    +GTG+GL L         G
Sbjct: 746 TSPS-HVRLLVEDTGLGIDPAQQAQVFEPFQRL-GRENSMIQGTGIGLSLCLEFARLMNG 803

Query: 791 KFYIFSTPAKGTLIEIIFP 809
           +  + S P  G+   I  P
Sbjct: 804 QMGLHSEPGVGSRFWIELP 822


>gi|227887277|ref|ZP_04005082.1| sensory histidine kinase AtoS [Escherichia coli 83972]
 gi|300983212|ref|ZP_07176489.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           MS 45-1]
 gi|301048967|ref|ZP_07195956.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           MS 185-1]
 gi|227835627|gb|EEJ46093.1| sensory histidine kinase AtoS [Escherichia coli 83972]
 gi|300299218|gb|EFJ55603.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           MS 185-1]
 gi|300408613|gb|EFJ92151.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           MS 45-1]
 gi|315292173|gb|EFU51525.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           MS 153-1]
          Length = 593

 Score =  288 bits (736), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 94/467 (20%), Positives = 199/467 (42%), Gaps = 30/467 (6%)

Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
            +   +   +I      + L +  +         +++  +    I+    +   +    N
Sbjct: 143 SMIPIERNGEILGYIWANELTEDIRRQAWKMDARIIIVLTAGLLISLLLIVLFSRRLSAN 202

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN--KRKMEIEVMQLCSILEATSDGIAI 467
              +T      A   P  +PQ   E   +   +N   + +         I+E  +DG+  
Sbjct: 203 IDIITDGLSTLAQNIPTRLPQLPGEMGQISQSVNNLAQALRETRTLNDLIIENAADGVIA 262

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
           I+R+G + + N A   + GY   +++ +P+++       +     + + L          
Sbjct: 263 IDRQGDVTTMNPAAEVITGYQRHELVGQPYSMLF---DNTQFYSPVLDTLEHGTEHV-AL 318

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
                 ++ + + L +   ++  +        +   D++  K+ + +++ A+++A     
Sbjct: 319 EISFPGRD-RTIELSVTTSRIHNTHGEMIGALVIFSDLTARKETQRRMAQAERLAT---- 373

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
              + +A V+HE+R PLTAI G+ ++++ Q   P+    + EY + + +  + +  ++  
Sbjct: 374 -LGELMAGVAHEVRNPLTAIRGYVQILRQQTRDPI----HQEYLSVVLKEIDSINKVIQQ 428

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703
           LL+ S+    +    ++ VSL+  V E + LVQ    + R+   +   N +  I AD   
Sbjct: 429 LLEFSRPRHSQ----WQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSPINADREL 484

Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
           +KQ+ LNIL NA+    + G+I I T   S+ +  + + D G G+     +K   PF   
Sbjct: 485 LKQVLLNILINAVQAISARGKIRIRTWQYSDSQQAISIEDNGSGIDLSLQKKIFDPFFTT 544

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             S      GTGLGL L++ +++A+ G   + S P  G    +I P+
Sbjct: 545 KAS------GTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILPI 585



 Score = 40.4 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/117 (10%), Positives = 37/117 (31%), Gaps = 6/117 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G +  ++       G    +++G     +    +    + + D L+          
Sbjct: 263 IDRQGDVTTMNPAAEVITGYQRHELVGQPYSMLF--DNTQFYSPVLDTLEHGTEHVALEI 320

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
            +P     + + +  +   I++ + E  G     I        + +    + ++  +
Sbjct: 321 SFPGRDRTIELSVTTS--RIHNTHGEMIGA--LVIFSDLTARKETQRRMAQAERLAT 373


>gi|262381697|ref|ZP_06074835.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
 gi|262296874|gb|EEY84804.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
          Length = 632

 Score =  288 bits (736), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 103/512 (20%), Positives = 199/512 (38%), Gaps = 32/512 (6%)

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
              +S   D  E +  +     P+   +Y   G L   N   + +   +S  D+      
Sbjct: 125 EEKISKMIDHNEMIFRKLYVNLPVGVELYDRDGYLIDLNAKDMEIFGIRSKKDVLGVNIF 184

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
           S  +    +         + +R + +        +      E  + +        +Q  E
Sbjct: 185 SNPIMPKDVIKKLKENKSVNFRLNYSFKKVD-DYYNTSKVGE--MDIVTKASILYDQRGE 241

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR---EGI-ILSTNRAVS 482
                 I  ++ +  I   ++         +      G A+ +    EG  I      + 
Sbjct: 242 PSSYLLINLDNTEKMIAYNRISEFENVFTLVSVYAKVGYALYDLYTFEGYAIKQWYENMG 301

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE-KLLSL 541
           +  G P+  I+      ++  N    +N +  E+          +     + +  K +  
Sbjct: 302 EKDGTPLSQIIG--IYSYIHPNDAGYINSFFEEV-KQGKAHHFRREVRVKSGDGWKWICA 358

Query: 542 RIIIKK---LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
            I        P         +DI+E K  + K    ++ AE+    KS FLA +SHEIRT
Sbjct: 359 NITRNPQSVDPNKPEMICINYDITELKDSQLK----RERAEELDRLKSAFLANMSHEIRT 414

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
           PL AI+GFS+++              E+   ID +  ++L +++D+LD++KIESG M+  
Sbjct: 415 PLNAIVGFSQLLAETD----DPEERHEFVEIIDSNNRMLLQLISDILDLAKIESGTMDFK 470

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718
           F  +++ E ++E ++  ++   +  + +     +   +I +D   + Q+  N L+NAI +
Sbjct: 471 FADMNVKEVINEIVTSFRIKMPD-NVALIAPQDSPECQIYSDRMRLTQVISNFLNNAIKY 529

Query: 719 TPSGGQIIISTTHTS-NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
           T  G    I+  +    +E+   V DTG GM+          F +    +    +GTGLG
Sbjct: 530 TSEG---CITLAYEIIGDEIKFSVTDTGDGMSQEIQAHIFDRFYKGNTFK----QGTGLG 582

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           L + + +V+   G+  + S   KG+      P
Sbjct: 583 LSICETIVNRLGGRIGVNSELGKGSTFWFTHP 614


>gi|91772550|ref|YP_565242.1| Cache sensor signal transduction histidine kinase [Methanococcoides
           burtonii DSM 6242]
 gi|91711565|gb|ABE51492.1| HATPase domain-containing external sensor signal transduction
           histidine kinase [Methanococcoides burtonii DSM 6242]
          Length = 633

 Score =  288 bits (736), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 79/253 (31%), Positives = 130/253 (51%), Gaps = 3/253 (1%)

Query: 558 MHDISEWKQEKN-KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
           ++DI +  Q  +  L  A K  +     K  FL+ VSHE+RTPLT+I G+++ + ++  G
Sbjct: 374 LNDILDSLQIYSNDLEKANKELKSLDQMKDVFLSNVSHELRTPLTSIKGYTQNLYDESLG 433

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
            + N         + R+ + +  +V+ LL IS+ ++  +   F+   + + +S  I    
Sbjct: 434 DI-NGSQKTSLETVLRNADRLRRLVDSLLYISQAQAEIIEYDFKECYIAKIISNTIMDTI 492

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
           +   E  + I     +++P I AD   +  +  NI+ NAI FTP GG II+         
Sbjct: 493 MLVEENDLHIEKKIPSDLPTIEADEARLVDMLNNIVDNAIKFTPPGGMIILGV-FDDENY 551

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           + L V DTG+G+    +    K F QI +S + +  GTGLGL + K +VDA+ G+ +I S
Sbjct: 552 LHLTVSDTGIGIPKELIPNLFKKFYQIDSSIRRKYGGTGLGLYICKKIVDAHSGEIWIES 611

Query: 797 TPAKGTLIEIIFP 809
            P KGT + I  P
Sbjct: 612 EPHKGTTVHIRLP 624


>gi|75907783|ref|YP_322079.1| response regulator receiver signal transduction histidine kinase
           [Anabaena variabilis ATCC 29413]
 gi|75701508|gb|ABA21184.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Anabaena variabilis ATCC 29413]
          Length = 443

 Score =  288 bits (736), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 78/247 (31%), Positives = 134/247 (54%), Gaps = 2/247 (0%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E ++++ ++        + S  KS FLA +SHE+RTP+ AIIGFS+++   +FG L   +
Sbjct: 152 ELERQRQQIQIQNLKLLEASRLKSQFLATMSHELRTPMNAIIGFSQILLRPKFGNLTG-Q 210

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             +    I  +G  +L ++N++LD SK+E G++ L  E   L + ++ A++ ++  A  K
Sbjct: 211 QADMVERILNNGKHLLMLLNEVLDFSKLEEGRLELKPELFDLTKVINAAVAEMRSLAEAK 270

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           ++ +        P ++ D   +KQI +N+LSNAI FT SG  I I         V +RV+
Sbjct: 271 KLSLLVQIDLQNPLLVNDPVRIKQILINLLSNAIKFTDSGS-IWIDVKDLPGSWVEIRVK 329

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG+G+ + + +   + F Q+  S   +  GTGLGL +  ++V    GK  + S    G+
Sbjct: 330 DTGIGIASKDFKYIFEAFRQVDQSITRKYAGTGLGLAIIDSLVQMMSGKIILESQLGVGS 389

Query: 803 LIEIIFP 809
           +  I  P
Sbjct: 390 IFTITLP 396


>gi|229103244|ref|ZP_04233927.1| hypothetical protein bcere0019_23940 [Bacillus cereus Rock3-28]
 gi|228680083|gb|EEL34277.1| hypothetical protein bcere0019_23940 [Bacillus cereus Rock3-28]
          Length = 590

 Score =  288 bits (736), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 87/501 (17%), Positives = 173/501 (34%), Gaps = 41/501 (8%)

Query: 314 YFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                E      +   P+    +  +G+    N    ++T Y + + I     L  L   
Sbjct: 102 LLSRKEEELHTILQNMPVMVDALDYNGDFVLWNRECEIVTGYTAEEIIGNPNALQLLYPD 161

Query: 373 PKLSDNNAIKPVML----YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
                    K +         + +    +  + TI W+                      
Sbjct: 162 HNYRHQIQNKFLTRGKNFRDWEMSLTCKNGEIKTIMWSN-----------ISEQFPVTGF 210

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
               +  +    +  + +++ +  +L  I +A  D   +   +G I+         F  P
Sbjct: 211 SYWAVGVDITHLKAIEEQLKQQTSELELIFKALPDLCFLTKDDGTIIDYKAGSPTKFYVP 270

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            E  + K F   L           + ++        +E           +         L
Sbjct: 271 AEAFMGKKFYEILPSPVAQQFQEAIRQLKDEGKNVIVEYPLTI---NGSIDFFEARCLPL 327

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                  + + DI+E K+ +  L+ +  +A           A V+HE+R PLT I GF +
Sbjct: 328 LQDK-IMIIVRDITERKKAEELLNKSDTLA-----AIGQLAAGVAHEVRNPLTVIKGFIQ 381

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
                    +      +Y + +      +  I+ + L I+K +     ++ E  ++ +  
Sbjct: 382 ------LFQINKEDQEKYFDLMLSEIERIEAILQEFLSIAKTD----EINTEKKNIYQIF 431

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
              +SL+   A    I +     +    I      +KQ+ +NIL N+I    +GG+I I 
Sbjct: 432 KNVVSLINTKAIMTNIQVELFTDSEEIIIECSENQLKQVFINILQNSIEAMLNGGKISIH 491

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                   VI+ V D G+G+    +++  +PF         + +GTG+GL L+  +++++
Sbjct: 492 IKEIHKNGVIINVIDEGIGIPEERIKRLGEPFY------STKEKGTGIGLMLSYKIIESH 545

Query: 789 MGKFYIFSTPAKGTLIEIIFP 809
            G   I S    GT + I  P
Sbjct: 546 QGTISIMSEVGVGTTVTIYLP 566


>gi|222054272|ref|YP_002536634.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. FRC-32]
 gi|221563561|gb|ACM19533.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. FRC-32]
          Length = 887

 Score =  288 bits (736), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 78/422 (18%), Positives = 158/422 (37%), Gaps = 31/422 (7%)

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN- 469
            A+             +     +     +    + ++++   +  +I +  SD I I   
Sbjct: 335 TALPSHDELGFLSRSFDAMTEALSARLQEKDAAEAQLKVSEEKFRAIFDHLSDAIFIHEI 394

Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
             G I+  N A+  ++GY   + ++       +   P      +  +      +      
Sbjct: 395 GNGRIIDVNYAMCDMYGYTATEAIKLTIQEISQGEPPYSATEAMQFMQLAGDGEPQLFEW 454

Query: 530 LGSTKEEKLLSLRIIIKK--LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS- 586
                +     + + +++  +  +    +   DISE K  + +     +   +    +S 
Sbjct: 455 HARHHDGSFFWVEVSMRRAAVGETDAIVVLARDISERKAAEAEKKTLLEQLNQSQKMESV 514

Query: 587 -DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
                 ++H+    LT IIGF+E+   +      N       + I ++     D+V+ LL
Sbjct: 515 GRLAGGIAHDFNNLLTPIIGFAELAAQEI---PENGTTKAKIDRIVQAALRAKDLVHQLL 571

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
             S+    K  L  + + L+  +S    +++   +E RI IR      +  I AD  +V+
Sbjct: 572 SFSR----KQILDMKIIDLNVVISSFYQILRRTISE-RIEIRLQLFPGLGGIRADRTNVE 626

Query: 706 QIALNILSNAIHFTPSGGQIIIST--------------THTSNEEVILRVRDTGVGMTNY 751
           QI +N+L NA       G + I T                      +L V DTG G+   
Sbjct: 627 QILMNLLVNAQDAIDGAGTVTIETGEVVLDDEYARFHAEAVPGRYALLAVTDTGNGIAKG 686

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
           +L    +PF     +    G+G+GLGL     +V  + G  + +S   +GT+ ++ FP+ 
Sbjct: 687 DLPHIFEPFFTTKMT----GKGSGLGLATVYGIVKQHHGNIWAYSEEGQGTVFKMYFPMT 742

Query: 812 DT 813
           + 
Sbjct: 743 EA 744



 Score = 45.0 bits (105), Expect = 0.056,   Method: Composition-based stats.
 Identities = 15/149 (10%), Positives = 44/149 (29%), Gaps = 10/149 (6%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS---DILHIDPNNHIGDLLKRQN 141
           F   I  +G + +++  +    G  A + I + + ++S                L     
Sbjct: 390 FIHEIG-NGRIIDVNYAMCDMYGYTATEAIKLTIQEISQGEPPYSATEAMQFMQLAGDGE 448

Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
               +      +G+  +V + +    +   +          +           A  K L 
Sbjct: 449 PQLFEWHARHHDGSFFWVEVSMRRAAVGETDAIVV------LARDISERKAAEAEKKTLL 502

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSP 230
           ++ +   +++          +D  +  +P
Sbjct: 503 EQLNQSQKMESVGRLAGGIAHDFNNLLTP 531


>gi|269965226|ref|ZP_06179360.1| sensor histidine kinase/response regulator [Vibrio alginolyticus
           40B]
 gi|269830212|gb|EEZ84439.1| sensor histidine kinase/response regulator [Vibrio alginolyticus
           40B]
          Length = 932

 Score =  288 bits (736), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 82/252 (32%), Positives = 132/252 (52%), Gaps = 10/252 (3%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  AKK A++ +  KS+FLA +SHE+RTPL  +IGF+  +   +          +Y   
Sbjct: 276 ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLSN----SQTDYLQT 331

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I++S N +L+I+ND+LD SK+E+GK+ L   P    E++ E I+L    A+EK + I   
Sbjct: 332 IEKSANNLLNIINDILDFSKLEAGKLALENIPFDFRESLEEVINLQATSAHEKGLEITLK 391

Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT----SNEEVILRVRDT 744
               IP  ++ D   ++QI  N++ N+I FT  G  I +S         + E+   VRDT
Sbjct: 392 VDPKIPPGLVGDPLRIQQILTNLVGNSIKFTERG-NIDVSVEMRSQSGDSVELQFMVRDT 450

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G++  +  +  + F Q   S   R  GTGLGL + + +V    G+  + S   +G+  
Sbjct: 451 GIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTF 510

Query: 805 EIIFPLYDTSHP 816
                L+ T  P
Sbjct: 511 WFTVRLHSTEMP 522


>gi|257061154|ref|YP_003139042.1| histidine kinase [Cyanothece sp. PCC 8802]
 gi|256591320|gb|ACV02207.1| histidine kinase [Cyanothece sp. PCC 8802]
          Length = 626

 Score =  288 bits (736), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 82/268 (30%), Positives = 141/268 (52%), Gaps = 8/268 (2%)

Query: 547 KLPFSSCYSLTMHDISEWKQEK-NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
           ++      ++ + D+ E  Q    ++  A + A+  +  KS+FLA  SHE+RTPL  IIG
Sbjct: 355 RIREVDQLAIAIQDMVERLQAWGEEVVSAWQEAQNANRLKSEFLATTSHELRTPLNGIIG 414

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
              ++K            +E+    +++   +L I++D+LD++KIE+GK+++  EPV L 
Sbjct: 415 CLHILKEGYCD--SKEEELEFLQQAEQAAVHLLGIIDDVLDLAKIEAGKLSVSLEPVDLT 472

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725
             +SE I+L  +   +KR+ + T    +   + AD + +KQ+ LN+L NAI FT  G  I
Sbjct: 473 SLLSEVINLQTITLQKKRLTLMTKINPHSIIVQADPKKLKQVILNVLGNAIKFTEKG-NI 531

Query: 726 IISTTHTSNEE---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
            I T    N     V + V+DTG+G+   + +K  +PF  +  S   +  GTGLGL +++
Sbjct: 532 TIKTHIEENNHQKQVCITVKDTGIGIDIKQQDKLFRPFVMVDGSTTRKYSGTGLGLAISR 591

Query: 783 AMVDANMGKFYIFST-PAKGTLIEIIFP 809
            ++    G   + S     GT ++I  P
Sbjct: 592 NLMQLMGGNITLSSEGIDLGTTVKICLP 619


>gi|166030935|ref|ZP_02233764.1| hypothetical protein DORFOR_00616 [Dorea formicigenerans ATCC
           27755]
 gi|166029202|gb|EDR47959.1| hypothetical protein DORFOR_00616 [Dorea formicigenerans ATCC
           27755]
          Length = 995

 Score =  288 bits (736), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 81/326 (24%), Positives = 147/326 (45%), Gaps = 17/326 (5%)

Query: 497 FTVFLEQNTPSVMNHYLT-EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555
               + +        ++    ++  L +         T E + L++ I+ +    +   S
Sbjct: 385 IQQVITEPFQEKYREFINMSTVTQRLEERETLSFTAQTVEGRWLTIIIVPQGYDKTGKLS 444

Query: 556 LTM---HDISEWKQEKNKLSHAKK----IAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
             +    D++E K+ + +     +     AE  +  K+ FL  +SH+IRTP+ AIIGF+ 
Sbjct: 445 TVLVANRDVTEEKEREIERDKNLRNALAAAEHANRAKTAFLNNMSHDIRTPMNAIIGFTA 504

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
            +     G       ++Y   I  S   +L ++ND+LD+S+IESG + + +  V L + +
Sbjct: 505 -LATTHIG--NTELVLDYLKKIHTSSQHLLSLINDVLDMSRIESGSVRIEYTTVHLPDIL 561

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIII 727
            +  +++Q   + K+  +     + I   I+ D   + Q+ LNI SNA+ FTP GG I I
Sbjct: 562 HDLRTIIQGSVHSKQQDLYIDTQDVIHEDIITDKLRLTQVLLNICSNAVKFTPVGGMINI 621

Query: 728 STT---HTSNEE--VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
             +      +    V+  V+D G+GM+    +     F +     +    GTGLG+ + K
Sbjct: 622 RVSEKPCRRDGYITVVFSVKDNGIGMSREFRKHVFDSFSREHTVTENGIGGTGLGMAITK 681

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIF 808
            +VD   G   + S   KGT   I+ 
Sbjct: 682 NIVDMMGGTIQVESETGKGTEFTIML 707


>gi|115360402|ref|YP_777539.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ambifaria
           AMMD]
 gi|115285730|gb|ABI91205.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ambifaria
           AMMD]
          Length = 528

 Score =  288 bits (736), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 75/371 (20%), Positives = 148/371 (39%), Gaps = 19/371 (5%)

Query: 448 EIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
                +  +++ A +D  + +++ +G + + N    ++ GY   +I+   F+ F   +  
Sbjct: 25  RFAEFRFETVVGAITDYAVFMLDPQGNVATWNAGAERIKGYRTTEIIGHHFSRFYPADAV 84

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDIS 562
           +     L  +    +    E       K+  L    + I  +               D++
Sbjct: 85  AAGRPAL-GLREASVHGRFEDEGWRVRKDGSLFWASVTITAVRDHGGQLAGFIKITRDMT 143

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E K+            E  +   S F+A ++HE+R  L  +     V++     P   P 
Sbjct: 144 ERKRL--------AELEMSTHRLSVFIAMLAHELRNHLAPLRHSVSVLQT---LPDPAPM 192

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             +  + + R    +  +V+DLLD+ +I +GK+ L   PV++ + V   +  +Q     +
Sbjct: 193 LAQCRDAVHRQVGQLTRLVDDLLDVGRITAGKVELDNAPVTVRDVVCRGVESIQPKLAAR 252

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           +  +R         +  D   + Q+  N+L NA  F+P G +I +S        V +RV 
Sbjct: 253 QQHLRVELPPEPVVVRGDAARLVQVLHNLLDNASKFSPPGARIDVS-ADREGSTVAIRVT 311

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKG 801
           D GVG+    LE     F Q     +   +G GLGL + ++ ++ + G+    S  P  G
Sbjct: 312 DHGVGIAAGSLETIFDLFDQDGVPGRRPSDGFGLGLAICRSFIELHGGRISAESEGPGHG 371

Query: 802 TLIEIIFPLYD 812
               +  P+  
Sbjct: 372 ATFTVRLPVEH 382



 Score = 62.7 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/445 (9%), Positives = 107/445 (24%), Gaps = 32/445 (7%)

Query: 53  NFTDQNQESVSNTNYLDSEN------TFVFDP--IPRTVRFTWNIDAHGYLKEISEELPK 104
           N  D   E        D+ +       F F+      T    + +D  G +   +    +
Sbjct: 2   NKDDAISELPPPLGPADARDLLHRFAEFRFETVVGAITDYAVFMLDPQGNVATWNAGAER 61

Query: 105 TIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLA 164
             G    ++IG           +        L +       +   W +          + 
Sbjct: 62  IKGYRTTEIIGHHFSRFYPADAVAAGRPALGLREASVHGRFEDEGWRVRKDGSLFWASVT 121

Query: 165 ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG----KRLDKKFSHLHEIKKGHSSVEKE 220
              +     + +GF    I            L     +         HE++   + +   
Sbjct: 122 ITAVRDHGGQLAGF--IKITRDMTERKRLAELEMSTHRLSVFIAMLAHELRNHLAPLRHS 179

Query: 221 KYDIFSQQSPPPHL------------RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
              + +   P P L            ++   V  L +        ++ +  P+   +   
Sbjct: 180 VSVLQTLPDPAPMLAQCRDAVHRQVGQLTRLVDDLLDVGRITAGKVELDNAPVTVRDVVC 239

Query: 269 LPEQEDFHTINLNQYTKKQYFGT----LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
              +     +   Q   +         ++ ++    + L +    +              
Sbjct: 240 RGVESIQPKLAARQQHLRVELPPEPVVVRGDAARLVQVLHNLLDNASKFSPPGARIDVSA 299

Query: 325 TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL-LDAPKLSDNNAIKP 383
             +   +   V  HG +  A  S   +      D +          L          +  
Sbjct: 300 DREGSTVAIRVTDHG-VGIAAGSLETIFDLFDQDGVPGRRPSDGFGLGLAICRSFIELHG 358

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
             +          +     +        A T  P  +A +         +  ++ D+   
Sbjct: 359 GRISAESEGPGHGATFTVRLPVEHHVETARTEAPAPRAGKPAAAPLNIVVVDDNRDSADT 418

Query: 444 KRKMEIEVMQLCSILEATSDGIAII 468
              +      +  +    SD +A++
Sbjct: 419 LAVLLQLKGHVPRVAYNASDALALV 443


>gi|50122492|ref|YP_051659.1| hybrid sensory histidine kinase BarA [Pectobacterium atrosepticum
           SCRI1043]
 gi|49613018|emb|CAG76469.1| two-component sensor kinase and response regulator [Pectobacterium
           atrosepticum SCRI1043]
          Length = 933

 Score =  288 bits (736), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 94/344 (27%), Positives = 154/344 (44%), Gaps = 19/344 (5%)

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
           F Y +   +  P    +       ++      L   +   +             +++ + 
Sbjct: 194 FAYRLMRDVTTPIRNMV-----DTVDRIRRGQLDSRVEGYMLGELDMLKNGINSMAMSLT 248

Query: 545 IKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
                         +D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTPL
Sbjct: 249 AYHEEMQQNIDQATYDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPL 308

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
             +IGF+     Q      N    +Y   I+RS N +L+I+ND+LD SK+E+GK+ L   
Sbjct: 309 NGVIGFT----RQTLKTPLNTTQTDYLLTIERSANNLLNIINDVLDFSKLEAGKLVLEDI 364

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFT 719
           P SL   + + + L+   A+EK + +  S  N++P   + D   ++QI  N+L NAI FT
Sbjct: 365 PFSLHSTLDDVVMLLAHTAHEKGLELTLSIQNDVPEQFVGDPLRIQQIITNLLGNAIKFT 424

Query: 720 PSGGQ-IIISTTHTSNEEVILRV--RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
             G   I +      + +V L V  RDTG+G+   +  +  + F Q   S   R  GTGL
Sbjct: 425 EQGNIDIRVEKRRQEHHQVQLEVQIRDTGIGIAELQQSQLFQAFRQADTSISRRHGGTGL 484

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTL--IEIIFPLYDTSHPHD 818
           GL + + +V    G     S   KG+     I  PL   + P +
Sbjct: 485 GLVITQRLVKEMGGDISFQSQLNKGSTFWFHITLPLNPHAMPTE 528


>gi|326802470|ref|YP_004320289.1| PAS/PAC sensor signal transduction histidine kinase
           [Sphingobacterium sp. 21]
 gi|326553234|gb|ADZ81619.1| PAS/PAC sensor signal transduction histidine kinase
           [Sphingobacterium sp. 21]
          Length = 520

 Score =  288 bits (736), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 87/512 (16%), Positives = 192/512 (37%), Gaps = 51/512 (9%)

Query: 331 IPFFVYSHGN----LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
           +   +         + Y N +F  LT Y   + I    G +         +    K +  
Sbjct: 32  VGVVITDCSQPDYPIVYCNKAFEELTGYSRNEVI----GHNCRFLQGNDDNEEQKKVIKT 87

Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
                        +   + +               ++        G++ +    ++  ++
Sbjct: 88  ALHLGQ--PCEIEIKNYKKDGSLFWNQ-LRLQPIRDEENNVTYYIGVQNDVTRLKLTNQQ 144

Query: 447 MEIEVMQ------------------LCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
           + +E ++                  L ++++   D + I+     I+  NR+  K F   
Sbjct: 145 LRVEKLKVKKTLVEHDNNLSEDEGLLTAVIDTVRDSVLILTENLHIIKVNRSFLKTFHIA 204

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK--ITLGSTKEEKLLSLRIIIK 546
            +++L +           ++    L E LS       +       +   +K+L+      
Sbjct: 205 EDEVLDQHILGIDNGKWNTMGLQNLAEQLSSKKTSIKDYLLEDFPTRVGKKVLNFDAHFI 264

Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
               ++   L + DI+E ++ +                K DFL+  SHE++TPLTAI   
Sbjct: 265 SHTTNANIILAISDITELRELE--------------KRKDDFLSTASHELKTPLTAITAS 310

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
            + +  +   P  +       N      + +  +V DLLD SKI++G++ L  +    D 
Sbjct: 311 LQ-LTQRMLPPDASETLKGTLNKTKSYVDKLEHLVIDLLDASKIKTGRIELTKQAFDFDA 369

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726
            + E +  ++   ++    ++ + +N     + D   ++Q+ LN+L+N+I F+P    I 
Sbjct: 370 MILEVVDKLRGKYHDNHFEVQGAASN---YYIGDRLRLEQVILNLLTNSIKFSPVNRSIN 426

Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
           I  +  S+  + + + D G+G+ +   +K    F ++    Q +  G G+GL ++  ++ 
Sbjct: 427 IHLSRLSD-FIKVSITDYGLGVDHQYQKKIFDSFYRVDE-IQKQYPGIGVGLYISNQIIK 484

Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
            + G  ++ ST  +G       PL    H  +
Sbjct: 485 KHKGTLWVESTIGEGATFSFTLPLKYQDHDKE 516



 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/105 (9%), Positives = 29/105 (27%), Gaps = 5/105 (4%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKRQNTWYGKTTLWPIE 153
           +   ++   +  G    ++IG     +  +  + +    I   L        +   +  +
Sbjct: 46  IVYCNKAFEELTGYSRNEVIGHNCRFLQGNDDNEEQKKVIKTALHLGQPCEIEIKNYKKD 105

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
           G+       L   PI       + +   G+ +            +
Sbjct: 106 GSLF--WNQLRLQPIRDEENNVTYY--IGVQNDVTRLKLTNQQLR 146


>gi|256829195|ref|YP_003157923.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfomicrobium baculatum DSM 4028]
 gi|256578371|gb|ACU89507.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfomicrobium baculatum DSM 4028]
          Length = 673

 Score =  288 bits (736), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 97/650 (14%), Positives = 223/650 (34%), Gaps = 53/650 (8%)

Query: 184 VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL 243
           +    + +  +      D+     ++   G+ ++++      + Q+    +     +   
Sbjct: 51  LQNEELRDTQKQFEIARDRFARLYNDAPVGYLTIDQSGIIAQTNQTFAEMVEKDPYLLCG 110

Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG------TLQNNSK 297
                      ++       +   +   +E    +   Q T +            +   +
Sbjct: 111 KALVDFIAAPDRSAFLGRFKAFFKNPDGKELSFALAGCQRTVRCVGRIENHRQESEQERR 170

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYK- 355
                        +     E E      ++     F+ + + G L   N ++  +T Y  
Sbjct: 171 LLLILSDITEQARMEEALQERERFLTSILETTQDGFWVIGADGRLTDINDAYCRMTGYTK 230

Query: 356 ---------SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
                     +D +E +      L     + +   +     R D +          ++  
Sbjct: 231 GELEGMRIGELDALEDSAVTEARLVRIVENGSELFETKH-RRKDGSIFDVEVSASYLELY 289

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
               +                        +  + +  +       M+   + + T +GI 
Sbjct: 290 GGMFICF--------------------CRDISNRKSAELACRENEMRYRLLSDVTMEGIV 329

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
           I  ++G+I+  N A+++L GY  ++IL K    FL           + + +  +  +   
Sbjct: 330 IH-KKGVIVDLNAALARLLGYEQQEILDKNILDFLVHEQD---RDIVRKNIVKEYARPYV 385

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
              +    E   + L     ++         + DISE  + + ++           + K 
Sbjct: 386 VRFVRKNGEAVFVELEARNFEINGEIMRVAAVRDISERIKSEEEIRRVNTELRNAIAEKD 445

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
            F + ++H++++P++  +  ++++    F  L         + +  S   V  ++ +LL+
Sbjct: 446 KFFSIIAHDLKSPISGFLSLTKILVED-FEELTVKEVNRSLDALYASSVRVYALLENLLE 504

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706
            ++++ G +        L   V  ++      A++K I++R    +++  +  D   +  
Sbjct: 505 WARVQQGLLTCSPSHFLLKGVVRASLDFTHSVADQKGIVLRDETPDDL-VVCIDPPMIGT 563

Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
           +  NI+SNA+ F+  G Q+ I T     + V + VRD GVGM  + L         + N 
Sbjct: 564 VLRNIISNALKFSNRGEQVRI-TARRDGDMVTVEVRDEGVGMDQHTLSMLFA----LDNK 618

Query: 767 QQI-RGEG---TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
                 EG   TGLGL L K  V+ + G  +  S+  +GT      PL D
Sbjct: 619 ITRPGTEGEASTGLGLILCKEFVEKHGGTIWAESSLGQGTTFYFTLPLAD 668



 Score = 74.3 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 41/385 (10%), Positives = 90/385 (23%), Gaps = 28/385 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147
           ID  G + + ++   + +    + + G  L D                  K  +   GK 
Sbjct: 84  IDQSGIIAQTNQTFAEMVEKDPYLLCGKALVDFIAAPDRSAFLGRFKAFFKNPD---GKE 140

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
             + + G    V            + +    R   I+             +  ++  + +
Sbjct: 141 LSFALAGCQRTVRCVGRIENHRQESEQ--ERRLLLILSDITEQARMEEALQERERFLTSI 198

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPP--PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
            E  +    V      +              K ++  +        +     +  L+   
Sbjct: 199 LETTQDGFWVIGADGRLTDINDAYCRMTGYTKGELEGMRIGELDALEDSAVTEARLVRIV 258

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL--SHRNHPSLSAYFDEGENLTP 323
           E+     E  H          +   +        F        N  S      E E    
Sbjct: 259 ENGSELFETKHRRKDGSIFDVEVSASYLELYGGMFICFCRDISNRKSAELACRENEMRYR 318

Query: 324 ETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS------- 376
              D       ++  G +   N +   L  Y+  + ++    L  L+             
Sbjct: 319 LLSDVTMEGIVIHKKGVIVDLNAALARLLGYEQQEILD-KNILDFLVHEQDRDIVRKNIV 377

Query: 377 -DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
            +      V   R +   +         + N E           +  +  E + +     
Sbjct: 378 KEYARPYVVRFVRKNGEAVFVELEARNFEINGEIMRVAAVRDISERIKSEEEIRRVNT-- 435

Query: 436 EDVDTRINKRKMEIEVMQLCSILEA 460
                    R    E  +  SI+  
Sbjct: 436 -------ELRNAIAEKDKFFSIIAH 453



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 23/242 (9%), Positives = 59/242 (24%), Gaps = 9/242 (3%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK 146
           W I A G L +I++   +  G    ++ GMR+ ++  +            +    +   +
Sbjct: 207 WVIGADGRLTDINDAYCRMTGYTKGELEGMRIGELDALEDSAVTEARLVRIVENGSELFE 266

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
           T     +G+   V +  + L +Y       G                    +  + ++  
Sbjct: 267 TKHRRKDGSIFDVEVSASYLELY-------GGMFICFCRDISNRKSAELACRENEMRYRL 319

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
           L ++      + K+   +    +    L  + +                 +       +E
Sbjct: 320 LSDVTMEGIVIHKKGVIVDLNAALARLLGYEQQEILDKNILDFLVHEQDRDIVRKNIVKE 379

Query: 267 SSLPEQEDFHTINLNQYTKKQYFG--TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
            + P    F   N      +       +                                
Sbjct: 380 YARPYVVRFVRKNGEAVFVELEARNFEINGEIMRVAAVRDISERIKSEEEIRRVNTELRN 439

Query: 325 TV 326
            +
Sbjct: 440 AI 441



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 38/279 (13%), Positives = 87/279 (31%), Gaps = 37/279 (13%)

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
            + Q  +E ++ + R  +++ EI   +   +      G   I++ GII  TN+  +++  
Sbjct: 43  QVYQIELELQNEELRDTQKQFEIARDRFARLYNDAPVGYLTIDQSGIIAQTNQTFAEMVE 102

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL-SLRIII 545
                +  K    F+     S               + L     G  +  + +  +    
Sbjct: 103 KDPYLLCGKALVDFIAAPDRSAFLGRFKAFFKNPDGKELSFALAGCQRTVRCVGRIENHR 162

Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
           ++        L + DI+E  + +  L             +  F           LT+I+ 
Sbjct: 163 QESEQERRLLLILSDITEQARMEEAL-----------QERERF-----------LTSIL- 199

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN-LHFEPV-- 662
             E  ++  +    + R       I+ +   +       L+  +I  G+++ L    V  
Sbjct: 200 --ETTQDGFWVIGADGR----LTDINDAYCRMTGYTKGELEGMRI--GELDALEDSAVTE 251

Query: 663 -SLDEAVSEAISLVQLYANEK-RILIRTSFANNIPRILA 699
             L   V     L +     K   +     + +   +  
Sbjct: 252 ARLVRIVENGSELFETKHRRKDGSIFDVEVSASYLELYG 290


>gi|227535594|ref|ZP_03965643.1| signal transduction histidine kinase [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
 gi|227186724|gb|EEI66791.1| signal transduction histidine kinase [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
          Length = 555

 Score =  288 bits (736), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 76/404 (18%), Positives = 166/404 (41%), Gaps = 34/404 (8%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEI----EVMQLCSILEATSDGIAIINREGI 473
                  P + P   +          +  +             +++    G+ +I+ +  
Sbjct: 178 DPDPVILPPDSPFVPVARRINALAAEQAHLREKVAVRQSSFDRLIDNLPLGVMLIDTDKD 237

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
           ++  N A+S+L G+     + +P   +L+      +   +      +     E   L + 
Sbjct: 238 VILHNHAMSQLLGHQ----IPQPRHSYLDDVKTYALARMIEHTFRHEKAHHQELTILTTQ 293

Query: 534 K--EEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
           K  +  ++ L   I +L       + ++D++  +Q +                + DF+  
Sbjct: 294 KSVDASVIPLNQGISRLQ----VLVILYDVTYLRQVE--------------KMQLDFVGN 335

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           VSHE++TP+TAI GF+E +               +   I      +  ++ND+L +S+ +
Sbjct: 336 VSHELKTPVTAISGFAETLLGG--AKNDPATLDRFLGIIYDESKRLTQLINDILTLSRPD 393

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
           S +       V+L + V +A+  +     +K+I +  +   ++  ++ D R + QI  N+
Sbjct: 394 SNQNVA--ASVALKKLVDDALHNLAKVIQDKQIRVEVAITPDLL-VVTDERKLTQIVRNL 450

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           L+NA+ +    G + IS     + ++ L V DTG+G++  E  +  + F ++  ++    
Sbjct: 451 LNNAVFYNRLAGHVTISAQVVDH-QLSLAVADTGIGISETEQARIFERFYRVDKARSRHN 509

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            GTGLGL +   +V +  G   + S    G+   +  P+ +  H
Sbjct: 510 GGTGLGLAIVAELVKSMDGHVAVHSQVGVGSTFTVTLPVGEGPH 553


>gi|191637827|ref|YP_001986993.1| Sensor protein (Fragment) [Lactobacillus casei BL23]
 gi|239631191|ref|ZP_04674222.1| signal transduction histidine kinase [Lactobacillus paracasei
           subsp. paracasei 8700:2]
 gi|301065952|ref|YP_003787975.1| signal transduction histidine kinase [Lactobacillus casei str.
           Zhang]
 gi|190712129|emb|CAQ66135.1| Sensor protein (Fragment) [Lactobacillus casei BL23]
 gi|239525656|gb|EEQ64657.1| signal transduction histidine kinase [Lactobacillus paracasei
           subsp. paracasei 8700:2]
 gi|300438359|gb|ADK18125.1| Signal transduction histidine kinase [Lactobacillus casei str.
           Zhang]
 gi|327381893|gb|AEA53369.1| PAS/PAC sensor signal transduction histidine kinase [Lactobacillus
           casei LC2W]
 gi|327385054|gb|AEA56528.1| PAS/PAC sensor signal transduction histidine kinase [Lactobacillus
           casei BD-II]
          Length = 555

 Score =  288 bits (736), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 76/404 (18%), Positives = 166/404 (41%), Gaps = 34/404 (8%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEI----EVMQLCSILEATSDGIAIINREGI 473
                  P + P   +          +  +             +++    G+ +I+ +  
Sbjct: 178 DPDPVILPPDSPFVPVARRINALAAEQAHLREKVAVRQSSFDRLIDNLPLGVMLIDTDKD 237

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
           ++  N A+S+L G+     + +P   +L+      +   +      +     E   L + 
Sbjct: 238 VILHNHAMSQLLGHQ----IPQPRHSYLDDVKTYALARMIEHTFRHEKTHHQELTILTTQ 293

Query: 534 K--EEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
           K  +  ++ L   I +L       + ++D++  +Q +                + DF+  
Sbjct: 294 KSVDASVIPLNQGISRLQ----VLVILYDVTYLRQVE--------------KMQLDFVGN 335

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           VSHE++TP+TAI GF+E +               +   I      +  ++ND+L +S+ +
Sbjct: 336 VSHELKTPVTAISGFAETLLGG--AKNDPATLDRFLGIIYDESKRLTQLINDILTLSRPD 393

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
           S +       V+L + V +A+  +     +K+I +  +   ++  ++ D R + QI  N+
Sbjct: 394 SNQNVA--ASVALKKLVDDALHNLAKVIQDKQIRVEVAITPDLL-VVTDERKLTQIVRNL 450

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           L+NA+ +    G + IS     + ++ L V DTG+G++  E  +  + F ++  ++    
Sbjct: 451 LNNAVFYNRLAGHVTISAQVVDH-QLSLAVADTGIGISETEQARIFERFYRVDKARSRHN 509

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            GTGLGL +   +V +  G   + S    G+   +  P+ +  H
Sbjct: 510 GGTGLGLAIVAELVKSMDGHVAVHSQVGVGSTFTVTLPVGEGPH 553


>gi|149190210|ref|ZP_01868485.1| sensor protein LuxQ [Vibrio shilonii AK1]
 gi|148835957|gb|EDL52919.1| sensor protein LuxQ [Vibrio shilonii AK1]
          Length = 864

 Score =  288 bits (736), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 88/378 (23%), Positives = 160/378 (42%), Gaps = 24/378 (6%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT--VFLE 502
            ++  +      +   +   I +   +  IL  N A  K      E++ +      V   
Sbjct: 350 ERLSEQEKLFQDLFNFSLSPIIVWTEKATILQINPAAKKSLEL-FEELNQSNSESFVLFV 408

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT-MHDI 561
                ++           +   +          EK+    +   +    S   L+   DI
Sbjct: 409 NEMTPLVMKASMGATLTGIDVPI---------GEKVFRWSLSAIQTRDDSTLVLSQGQDI 459

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           ++  + + +   A+K AE  +  ++DFLA++SHEIRTPL  I+G S+++K        + 
Sbjct: 460 TKLVEAEKQSIKARKEAEWSAKARTDFLAKMSHEIRTPLNGILGISQLLKQGG----DDG 515

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
           +Y E    +  SG  +L ++ND+LD SKIE+G   L        E ++    + +   + 
Sbjct: 516 KYQEQIEVLCNSGEHLLAVLNDILDFSKIENGSFKLEKHNFKFKEVITAIEGIYKPLCDH 575

Query: 682 KRILIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS-----TTHTSNE 735
           K I +      N    +  D   + QI  N++SNAI FT  G  + +S     T  T   
Sbjct: 576 KNIELVIQNGLNENTALNTDQVRLNQILFNLVSNAIKFTHKG-HVKVSFALKTTDSTKTN 634

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            + ++V DTG+G+ + ++++   PF Q   +      G+GLGL + K +V    G+  + 
Sbjct: 635 WLTIQVEDTGIGILSNQIQQVFDPFVQSEATLTREYGGSGLGLAIVKNLVTIFDGQINVS 694

Query: 796 STPAKGTLIEIIFPLYDT 813
           S   +GT  E+  P+   
Sbjct: 695 SEVGRGTRFEVRLPVETA 712


>gi|323496387|ref|ZP_08101445.1| multi-sensor hybrid histidine kinase [Vibrio sinaloensis DSM 21326]
 gi|323318664|gb|EGA71617.1| multi-sensor hybrid histidine kinase [Vibrio sinaloensis DSM 21326]
          Length = 837

 Score =  288 bits (736), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 105/675 (15%), Positives = 236/675 (34%), Gaps = 63/675 (9%)

Query: 165 ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDI 224
             P++  + +  G     I+   + +   + L        +H++       +V       
Sbjct: 187 GTPVFDNDGQRLGV----IILNYKGNQLIKKLLTVAPSFTNHVYLYNPQGIAVIHPTDSK 242

Query: 225 FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE-----KYPLLTSEESSLPEQEDFHTIN 279
            S  +  P+  + + V    +       +L        +     +   ++         N
Sbjct: 243 GSNFAVQPNRELPDDVFDWIQSLQQGQRLLGESYYTFSQISAPNNGSWTVVSVFPVQRFN 302

Query: 280 LNQYTKKQYFGTLQNNSKESFEYLSH-----RNHPSLSAYFDEGENLTPETVDKCPIP-F 333
           L++    Q +              +      R            E     T++   +   
Sbjct: 303 LSRQAFNQQYSWFYLLLFVVITLATLVFSRYRVQARFLRQRQGYEQHFRHTLENIQLAAV 362

Query: 334 FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393
            +   G + + N  FL +  Y++ + I     +   +  PK     A + +      +T 
Sbjct: 363 SINQRGVITFCNDFFLHMVGYQADEVI-GRPWVERFI--PKELQAQAKQALNEAIRQQTH 419

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
               +    +    E  L      F ++N    ++   G   +    ++ +  ++    +
Sbjct: 420 QP-HSESVVLSKAGEAHLVSWTSTFTESNDQEVSLTLLG--EDVTKQKMAQDHLQ----R 472

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
           L   +E++ + + I + +G I+  N    +L GY  E++L +                 L
Sbjct: 473 LSHAVESSQNSVMITDLDGKIIYVNPVFCELTGYLREEVLGRSPKFLQSGEMNKADYDVL 532

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQE-- 567
            + LS               K  +L   R  I  +         Y     DISE K+   
Sbjct: 533 WQTLSAGQEWKG--EFHNRKKSGELFWERARISPVKDVEGRSLYYVAVKQDISEEKRLAE 590

Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
           + +    ++I  ++ +     +  ++H++R PL++I    +     R  P       E  
Sbjct: 591 EVETQTRERIHHEKLAAVGKVVNMIAHDLRNPLSSIKMVLQ--LQSRAQPN------EMF 642

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
           +        +  I+ +LL  S+ +        E + L++ +   ++  Q  A +  + + 
Sbjct: 643 DISLDQVRYMEAILEELLSYSRPD----QFKPEWIDLNKLLEGVVASQQKLAKQNEVELE 698

Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHF--TPSGG--QIIISTTH---TSNEEVILR 740
                 +P +LAD   ++Q   N++ NA+    +   G  ++ IS+      SN ++++ 
Sbjct: 699 LVAWPKLPTLLADPIKLRQALQNLVLNAVQAAQSEQSGAAKVTISSNIMITDSNTQLLVE 758

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI--FSTP 798
           +R+ G  +    L+K  +PF         + +GTGLGL + K ++D++ G+  +   S  
Sbjct: 759 IRNNGQSIDPCTLDKVFEPFFTT------KAKGTGLGLAIVKRIIDSHQGQIELLPTS-- 810

Query: 799 AKGTLIEIIFPLYDT 813
             GTL  +  P   +
Sbjct: 811 -HGTLARVRIPASQS 824



 Score = 60.0 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/241 (10%), Positives = 66/241 (27%), Gaps = 7/241 (2%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKRQNTWYGKT 147
            D  G +  ++    +  G    +++G     + S  ++    + +   L     W G+ 
Sbjct: 487 TDLDGKIIYVNPVFCELTGYLREEVLGRSPKFLQSGEMNKADYDVLWQTLSAGQEWKGEF 546

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND-PRALGKRLDKKFSH 206
                 G   +    ++  P+         +    +      +      +  +  ++  H
Sbjct: 547 HNRKKSGELFWERARIS--PVKDVEGRSLYY--VAVKQDISEEKRLAEEVETQTRERIHH 602

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY-PLLTSE 265
                 G               S    L+++++      +    D V   E     L S 
Sbjct: 603 EKLAAVGKVVNMIAHDLRNPLSSIKMVLQLQSRAQPNEMFDISLDQVRYMEAILEELLSY 662

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
                 + ++  +N            L   ++   E ++    P+L A   +        
Sbjct: 663 SRPDQFKPEWIDLNKLLEGVVASQQKLAKQNEVELELVAWPKLPTLLADPIKLRQALQNL 722

Query: 326 V 326
           V
Sbjct: 723 V 723



 Score = 43.9 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 18/237 (7%), Positives = 66/237 (27%), Gaps = 16/237 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN--HIGDLLK--RQNTWY 144
           I+  G +   ++     +G  A ++IG    +      +       + + ++        
Sbjct: 364 INQRGVITFCNDFFLHMVGYQADEVIGRPWVERFIPKELQAQAKQALNEAIRQQTHQPHS 423

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            ++ +    G    V           +           +  +       +     L +  
Sbjct: 424 -ESVVLSKAGEAHLVSWTSTFTESNDQE--------VSLTLLGEDVTKQKMAQDHLQRLS 474

Query: 205 SHLHEIKKGHSSVEKEKY-DIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
             +   +      + +      +         ++ +V   +  +    ++ K +   L  
Sbjct: 475 HAVESSQNSVMITDLDGKIIYVNPVFCELTGYLREEVLGRSPKFLQSGEMNKADYDVLWQ 534

Query: 264 SEESSLPEQEDFHTI--NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
           +  +    + +FH    +   + ++     +++    S  Y++ +   S      E 
Sbjct: 535 TLSAGQEWKGEFHNRKKSGELFWERARISPVKDVEGRSLYYVAVKQDISEEKRLAEE 591


>gi|218442122|ref|YP_002380451.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
 gi|218174850|gb|ACK73583.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
          Length = 757

 Score =  288 bits (736), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 76/245 (31%), Positives = 126/245 (51%), Gaps = 5/245 (2%)

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK--NQRFGPLGNPRYIEY 626
            +L +   +A+     KS+FL+ +SHE+ TPLT +IG +  +   +     L   +  +Y
Sbjct: 365 EELKNTIAVAQSAHLSKSEFLSNISHELLTPLTCVIGLAGTLLHWSGEQSSLSPEKQKKY 424

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
              I  +G  ++D++ND+LD S + SG   L     SL    S  +   Q  A +K I +
Sbjct: 425 IESIQANGKKLMDLINDILDYSSLTSGNYQLRIREFSLYSVASAVMGDFQEEAQKKSIEL 484

Query: 687 RTSFA--NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744
              F       +  AD   V+QI  ++++NAI FTP GG++ +        +V  ++ DT
Sbjct: 485 VLDFQVKKEEIKFYADPDRVQQIISHLMNNAIKFTPEGGRVTLRI-WREKNQVFFQIEDT 543

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G+T  +L    + F Q+ +S+Q    GTGLGL L K +V+ + G   + STP +G+L 
Sbjct: 544 GIGITQDQLPLLFEKFQQLESSRQRTHGGTGLGLALTKQLVELHRGTIEVESTPHEGSLF 603

Query: 805 EIIFP 809
            +  P
Sbjct: 604 TVRLP 608


>gi|219848012|ref|YP_002462445.1| PAS/PAC sensor signal transduction histidine kinase [Chloroflexus
           aggregans DSM 9485]
 gi|219542271|gb|ACL24009.1| PAS/PAC sensor signal transduction histidine kinase [Chloroflexus
           aggregans DSM 9485]
          Length = 430

 Score =  288 bits (736), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 77/373 (20%), Positives = 163/373 (43%), Gaps = 40/373 (10%)

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           ++++    G+ ++NR   I+  N     L     +       T+  +     + +  +T+
Sbjct: 81  ALVQTIDTGVIVVNRACQIVFHNDTAIHLLAGQPDMRGSGLITLVRDHQADRLAHDAMTD 140

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575
                   T+  +  G T   + + L              +T+ D+++    +       
Sbjct: 141 --GEQRELTIRPLATGRTLHLQFVPLY---TASRDIVGALITIRDLTQISMLE------- 188

Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
                    + D +A VSHE+RTPL ++    E +++                 + +  +
Sbjct: 189 -------RARRDLVANVSHELRTPLASLKLLVETLQS----APPPDIAARMLEQMAQEID 237

Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695
            V  +V++L ++S++ESG+++L  EP+++   +  AI  ++  A  K   I T   +++P
Sbjct: 238 AVTQLVDELHELSRLESGRVSLKLEPLAVWPVIERAIERIRPQAERKHHTICTEPVSDLP 297

Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTT-----------------HTSNEEVI 738
             L D   + Q+ LN+L NA+ FTP GG I ++                   H +   ++
Sbjct: 298 PALMDGDRIGQVLLNLLHNAVKFTPEGGTITVAAQVLHIAVDDPPSRTDRPPHPAGTWIL 357

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           + VRDTG+G+++ ++ +  + F ++  ++     GTGLGL +AK +V+ + G+ +  S  
Sbjct: 358 ISVRDTGIGISSRDIRRIFERFYKVDRARTRHTGGTGLGLAIAKHLVEGHGGRIWASSQE 417

Query: 799 AKGTLIEIIFPLY 811
            +G+      P+ 
Sbjct: 418 GRGSTFWFTLPVA 430


>gi|309389129|gb|ADO77009.1| Hpt sensor hybrid histidine kinase [Halanaerobium praevalens DSM
           2228]
          Length = 1043

 Score =  288 bits (736), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 74/236 (31%), Positives = 123/236 (52%), Gaps = 7/236 (2%)

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
           K+ AE  +  KS+FLA +SHEIRTP+ AI G   +I +         +  +Y   I  S 
Sbjct: 307 KQKAELANKAKSEFLANMSHEIRTPINAIKGLIYLILDTPLSM----QQKDYLKKIQSST 362

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
             +  ++ND+LD SKIE+ K++L  E  +LD+ + +  +   + A +K +       +  
Sbjct: 363 VSLSRLINDILDFSKIEAKKLDLEAEEFALDDVLHDLSNQAAMKAYDKGLEFFYDTDHVP 422

Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQ---IIISTTHTSNEEVILRVRDTGVGMTNY 751
            +++ D   + QI LN++SNAI FT +G     + I        ++   V+DTG+GMT  
Sbjct: 423 QKLVGDSLRLGQILLNLVSNAIKFTETGEVRLIVRIIKKTEQKIKLKFIVKDTGIGMTKE 482

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           E +K    F Q  +S   +  GTGLGL +++ +V+   G+  + S PA+G+     
Sbjct: 483 EQQKLFSQFTQADSSTTRKYGGTGLGLTISQRLVEKMGGEIKVESKPAEGSTFTFT 538


>gi|222094734|ref|YP_002528794.1| sensor histidine kinase [Bacillus cereus Q1]
 gi|221238792|gb|ACM11502.1| sensor histidine kinase [Bacillus cereus Q1]
          Length = 896

 Score =  288 bits (736), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 78/338 (23%), Positives = 147/338 (43%), Gaps = 18/338 (5%)

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            +D++ +            +    +  +L      T E        + +   L++  ++L
Sbjct: 395 HQDLIHQTVDNLGLTIHSIMGRMRIQTLLHESQAMTEELQVQSEELQTQAEELQMQAEEL 454

Query: 549 PFSSCYSLTMHDISEWKQEKN-----KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
             ++    +  + +E K         +L        + S +KS+FLA +SHE+RTPL +I
Sbjct: 455 RTTNEQLESRTEEAEQKTADLQVTKLELEEKASELLRSSKYKSEFLANMSHELRTPLNSI 514

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +  SE++K      L +    E A  I  SG  +L ++ND+LD+SK+E+GK+++ FE  +
Sbjct: 515 LLLSEMLKENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIFEATN 573

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSG 722
           + +  +         A +K +      ++ IP +   D + ++QI  N+LSNA  FT  G
Sbjct: 574 ISDMAASMQQNFLHIAAQKNVEFTVEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKG 633

Query: 723 GQ------IIISTTHTS-----NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
                   +  S           + + + V+DTG+G+   + +   + F Q   +   + 
Sbjct: 634 SVSLHFDSVETSNLSHDMQSISKDWISISVKDTGIGIAKEQHQLIFEAFQQADGATIRKY 693

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            GTGLGL + K       G   + S   +G+   +  P
Sbjct: 694 GGTGLGLSICKEFARLLGGWITLESNVGEGSTFTVYIP 731


>gi|167645203|ref|YP_001682866.1| multi-sensor signal transduction histidine kinase [Caulobacter sp.
           K31]
 gi|167347633|gb|ABZ70368.1| multi-sensor signal transduction histidine kinase [Caulobacter sp.
           K31]
          Length = 579

 Score =  288 bits (736), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 108/357 (30%), Positives = 178/357 (49%), Gaps = 11/357 (3%)

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
           L ++++     + +I+  G I +   A  +  G     +  +             ++  L
Sbjct: 200 LQALVDGAPQLLLVISSNGRIKTVRGAAPR--GVATLALTSEGLASAAVAGDRQKVSAAL 257

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH 573
              L            L  T   + + L +              M D +  K  +  L  
Sbjct: 258 VAALDGGEASVSFAPLLDPT---RTVCLDLRQV---SPDMLVGVMRDATIDKARETALQQ 311

Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
           A+  AE  ++ ++ FLA +SHE+RTPL AI+GFS++++ + FGPL + RY EYA  I  S
Sbjct: 312 ARAEAEALAAGRARFLANMSHELRTPLNAIMGFSDIMRARMFGPLTD-RYGEYAELIHES 370

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693
           G  +LD++ND+LD+SKIE+ +  L        EAV+ A+ L+++ A+   + +R      
Sbjct: 371 GRHLLDLINDVLDMSKIEAERFELQRGEFDAREAVTAAMRLLRVQADAAGVQLRGVLPPT 430

Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753
              + AD R++KQI LN++SNA+ FTP GGQ+ + T    + E  L V DTGVG++  +L
Sbjct: 431 DLEVDADRRALKQIVLNLVSNALKFTPRGGQVTV-TADGHDGEFELVVADTGVGISPEDL 489

Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           E+  +P+ Q     Q   +GTGLGL L +A    + G+ +I S    GT + +  P+
Sbjct: 490 ERLGRPYEQAGGVDQRA-KGTGLGLSLVRAFAKLHGGEMHIESRMGAGTSVSVRMPV 545


>gi|326938736|gb|AEA14632.1| two component system histidine kinase [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 896

 Score =  287 bits (735), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 78/341 (22%), Positives = 150/341 (43%), Gaps = 24/341 (7%)

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            +D++++            +    +  +L      T E        + +   L++  ++L
Sbjct: 395 HQDLIQQTINNLGLTIHSIIGRMRIQTLLHESQAMTEELQVQSEELQTQAEELQMQAEEL 454

Query: 549 PFSSCYSLTMHDISEWKQEK-----NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
             ++    +  + +E K        ++L        + S +KS+FLA +SHE+RTPL +I
Sbjct: 455 RTTNEQLESRTEEAEQKTADLQITKSELEEKASELLRSSKYKSEFLANMSHELRTPLNSI 514

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +  SE+++      L +    E A  I  SG  +L ++ND+LD+SK+E+GK+++ FE  +
Sbjct: 515 LLLSEMLRENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDIIFEATN 573

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSG 722
           + +  +         A +K +      ++ IP +   D + ++QI  N+LSNA  FT  G
Sbjct: 574 ISDMAANMHQNFLHIAAQKNVEFTIEDSDTIPNLFYTDAKRIEQIIKNLLSNAFKFTEKG 633

Query: 723 GQIIISTTHTS--------------NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
               +S    S               + + + V+DTG+G+   + +   + F Q   +  
Sbjct: 634 S---VSLHFDSIETTNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGATI 690

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            +  GTGLGL + K       G   + S   +G+   +  P
Sbjct: 691 RKYGGTGLGLSICKEFARLLGGWITLESNVGEGSTFTVFIP 731


>gi|237748106|ref|ZP_04578586.1| two-component hybrid sensor kinase/response regulator [Oxalobacter
           formigenes OXCC13]
 gi|229379468|gb|EEO29559.1| two-component hybrid sensor kinase/response regulator [Oxalobacter
           formigenes OXCC13]
          Length = 1068

 Score =  287 bits (735), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 121/643 (18%), Positives = 241/643 (37%), Gaps = 67/643 (10%)

Query: 217 VEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFH 276
              E   IF  +      R   K        A +D      +   L         +    
Sbjct: 185 ANHEAIRIFGYEPEEFWNR---KEWHFPSLVAPEDWTQVFGEVSGLKEVGDKAHFEYRLL 241

Query: 277 TINLNQYTK---KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP- 332
             +          +    +   +     +L   +                 + +   I  
Sbjct: 242 KKDGTPCWIIGCAEVILDVDGETVFQSVFLDIDDSKKAEIERAMLAEQVQASNELLRISL 301

Query: 333 -------FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
                  F+ Y    L         L   K+  +      +      P   D+       
Sbjct: 302 EHTRTSEFYYYPEERLLVVPERAQRLYHCKARYENMPVSFVED-FVDPVSRDSVMKMYER 360

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
           ++R      +   ++        + + +         +  + +   G+  +       ++
Sbjct: 361 IHRG-GKTSSCELKIK------GSDVWVRTTLSTVTVKDGKPVFVVGVAEDIT----REK 409

Query: 446 KMEIEVMQLCSILEAT----SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
            +E+E +QL +I +       D +++ + E  + +   +          D    P +  L
Sbjct: 410 NIELENIQLHAIYDYIMNNDYDLMSVGDVERNVYTMRFS-------DDVDTRGMPLSGDL 462

Query: 502 EQNTPSVMNHYL--TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-------- 551
            +     +  ++   +   ++    + ++ +   +E    S        P          
Sbjct: 463 FEGNRLFIEKFVYPDDRSRIEEEFNIRRMKVNLDREGGNYSFYYRSTDNPPRYKEGKVSY 522

Query: 552 -----SCYSLTMHDISEWKQEKNK----LSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
                    LT+ DI E + ++ +    L+ A  +AEK ++ KSDFL+++SH++RTP+  
Sbjct: 523 FNGFHDRLLLTVRDIHEMRLKEERVRQTLTDALMVAEKANNAKSDFLSKMSHDMRTPMNG 582

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           IIG + + +  R  P    R  EY + I  + + +L ++ND+LD+SKI+SGK+ L  E  
Sbjct: 583 IIGLAMIAEKYRHDP---DRMKEYFSKITVASHHLLGLINDVLDMSKIDSGKIVLVSERF 639

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPS 721
           +L   + + + +V      ++  +R S A+++   +  D   ++Q+ +NILSNA+ FTP+
Sbjct: 640 NLVSLLKDVVDIVMPDLKSRQHAVRMSVASDVHERVEGDQLRLQQVFMNILSNAVKFTPA 699

Query: 722 GGQIIISTTHTSN-----EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
           GG I I  + + +         L   D G+GM+   L+K   PF +  NS   +  GTGL
Sbjct: 700 GGHIGIDVSESPSTFAGYGCYRLVFSDDGIGMSKEYLKKIFVPFEREDNSMTSKISGTGL 759

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819
           G+P++KA+V+   G F + S    G+   I   ++    P D 
Sbjct: 760 GMPISKAIVEMMNGSFDVESERGVGSTFTIT--VHLKHQPVDS 800



 Score = 68.1 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 28/259 (10%), Positives = 69/259 (26%), Gaps = 19/259 (7%)

Query: 343 YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT 402
           YA+   L L         E            K  D        +              H 
Sbjct: 42  YASDMMLQLLGLDDHPAAEECYSHWFSRIDAKAMDYVETSVAKML-ETGQFSEVQYLWHH 100

Query: 403 IQWN------RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
            +W                   E             ++ E++  +    ++E E  +  S
Sbjct: 101 PKWGNIHIRCGGKVYRREGSEIELRGYHQNISELAQLKEENLQKKQRLIEVEKEKNRYNS 160

Query: 457 ILEATSDGIA--IINREGIILS--TNRAVSKLFGYPVEDILRK---PFTVFLEQNTPSVM 509
           + E+   GI    +   G ++    N    ++FGY  E+   +    F   +     + +
Sbjct: 161 LFESVMCGIVQYRLVENGNVVFKNANHEAIRIFGYEPEEFWNRKEWHFPSLVAPEDWTQV 220

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---YSLTMHDISEWKQ 566
              ++ +  +  +           K+     +    + +        +     DI + K+
Sbjct: 221 FGEVSGLKEVGDKA--HFEYRLLKKDGTPCWIIGCAEVILDVDGETVFQSVFLDIDDSKK 278

Query: 567 EKNKLSHAKKIAEKESSHK 585
            + + +   +  +  +   
Sbjct: 279 AEIERAMLAEQVQASNELL 297



 Score = 43.1 bits (100), Expect = 0.19,   Method: Composition-based stats.
 Identities = 37/391 (9%), Positives = 95/391 (24%), Gaps = 33/391 (8%)

Query: 95  LKEISEELPKTIGNYAFKMIGM---RLCDVSDILHIDPN-NHIGDLLKRQNTWYGKTTLW 150
            K  + E  +  G    +           +            +  L +  +  + +  L 
Sbjct: 182 FKNANHEAIRIFGYEPEEFWNRKEWHFPSLVAPEDWTQVFGEVSGLKEVGDKAHFEYRLL 241

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
             +GT     I   A  I   + E + F+   +                L ++    +E+
Sbjct: 242 KKDGTP--CWIIGCAEVILDVDGE-TVFQ--SVFLDIDDSKKAEIERAMLAEQVQASNEL 296

Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270
            +      +     +  +     +  + +     +       V   E +    S +S + 
Sbjct: 297 LRISLEHTRTSEFYYYPEERLLVVPERAQRLYHCKARYENMPVSFVEDFVDPVSRDSVMK 356

Query: 271 EQEDFHT----------INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
             E  H           I  +    +    T+     +    +      +     +    
Sbjct: 357 MYERIHRGGKTSSCELKIKGSDVWVRTTLSTVTVKDGKPVFVVGVAEDITREKNIELENI 416

Query: 321 LTPETVDKCP----IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
                 D           V       Y         ++    D         L +  +L 
Sbjct: 417 QLHAIYDYIMNNDYDLMSVGDVERNVY-------TMRFSDDVDTRGMPLSGDLFEGNRLF 469

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
               + P    R +        +++  +     S            +  +    NG    
Sbjct: 470 IEKFVYPDDRSRIEEEFNIRRMKVNLDREGGNYSFYYRSTDNPPRYKEGKVSYFNGFHDR 529

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
            + T  +  +M ++  ++   L   +D + +
Sbjct: 530 LLLTVRDIHEMRLKEERVRQTL---TDALMV 557


>gi|228943732|ref|ZP_04106134.1| hypothetical protein bthur0008_62740 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228976242|ref|ZP_04136721.1| hypothetical protein bthur0003_59420 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228977716|ref|ZP_04138102.1| hypothetical protein bthur0002_9250 [Bacillus thuringiensis Bt407]
 gi|228782014|gb|EEM30206.1| hypothetical protein bthur0002_9250 [Bacillus thuringiensis Bt407]
 gi|228783487|gb|EEM31587.1| hypothetical protein bthur0003_59420 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228815951|gb|EEM62174.1| hypothetical protein bthur0008_62740 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
          Length = 883

 Score =  287 bits (735), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 78/341 (22%), Positives = 150/341 (43%), Gaps = 24/341 (7%)

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            +D++++            +    +  +L      T E        + +   L++  ++L
Sbjct: 382 HQDLIQQTINNLGLTIHSIIGRMRIQTLLHESQAMTEELQVQSEELQTQAEELQMQAEEL 441

Query: 549 PFSSCYSLTMHDISEWKQEK-----NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
             ++    +  + +E K        ++L        + S +KS+FLA +SHE+RTPL +I
Sbjct: 442 RTTNEQLESRTEEAEQKTADLQITKSELEEKASELLRSSKYKSEFLANMSHELRTPLNSI 501

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +  SE+++      L +    E A  I  SG  +L ++ND+LD+SK+E+GK+++ FE  +
Sbjct: 502 LLLSEMLRENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDIIFEATN 560

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSG 722
           + +  +         A +K +      ++ IP +   D + ++QI  N+LSNA  FT  G
Sbjct: 561 ISDMAANMHQNFLHIAAQKNVEFTIEDSDTIPNLFYTDAKRIEQIIKNLLSNAFKFTEKG 620

Query: 723 GQIIISTTHTS--------------NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
               +S    S               + + + V+DTG+G+   + +   + F Q   +  
Sbjct: 621 S---VSLHFDSIETTNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGATI 677

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            +  GTGLGL + K       G   + S   +G+   +  P
Sbjct: 678 RKYGGTGLGLSICKEFARLLGGWITLESNVGEGSTFTVFIP 718


>gi|161501988|ref|YP_001569100.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160863335|gb|ABX19958.1| hypothetical protein SARI_00004 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 918

 Score =  287 bits (735), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 87/333 (26%), Positives = 154/333 (46%), Gaps = 17/333 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +FG+ +   +  P    +               L   +   +             +++ +
Sbjct: 193 IFGWRLMRDVTGPIRNMVNTVDR-----IRRGQLDSRVEGFMLGELDMLKNGINSMAMSL 247

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 248 AAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTP 307

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+ +          NP   ++ N I+RS N +L I+ND+LD SK+E+GK+ L  
Sbjct: 308 LNGVIGFTRLTLKTEL----NPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILES 363

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P  L   + E ++L+   +++K + +  +  N++P  ++ D   ++Q+  N++ NAI F
Sbjct: 364 IPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKF 423

Query: 719 TPSGGQ-IIISTTHTSNEEVILRV--RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T SG   I++     SN +V + V  RDTG+G+   +  +  + F Q   S   R  GTG
Sbjct: 424 TESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTG 483

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           LGL + + +V+   G     S P +G+      
Sbjct: 484 LGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516


>gi|85058486|ref|YP_454188.1| hybrid sensory histidine kinase BarA [Sodalis glossinidius str.
           'morsitans']
 gi|84779006|dbj|BAE73783.1| two-component regulatory protein [Sodalis glossinidius str.
           'morsitans']
          Length = 925

 Score =  287 bits (735), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 90/335 (26%), Positives = 146/335 (43%), Gaps = 17/335 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           LF Y +   +  P    +               L   +   +             +++ I
Sbjct: 194 LFAYRMMRDVTGPIRNMVNTVDR-----IRRGQLDSRVEGYMLGELDMLKNGINAMAMSI 248

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                           D+ E  ++      +L  AKK A++    KS FLA +SHE+RTP
Sbjct: 249 SAYHEELQQNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAVRIKSKFLANMSHELRTP 308

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+         P       +Y   I+RSGN +L I+ND+LD SK+E+GK+ L  
Sbjct: 309 LNGVIGFTRQTLKTPLSPT----QRDYLQTIERSGNHLLSIINDVLDFSKLEAGKLMLET 364

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P +L   + E + L+   A+EK + +       +P  ++ D   ++Q+  N++ NAI F
Sbjct: 365 IPFALRAILDEVVILLAHTAHEKGLELILQVQREVPEYVIGDPLRLQQVMTNLIGNAIKF 424

Query: 719 TPSGGQII-ISTTHTSNEEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T  G  II +S      E V +  ++RDTG+G+   +  +  + F Q   S   R  GTG
Sbjct: 425 TEQGHIIIRVSCQGHERERVEINVQIRDTGIGIPERQQSQLFQAFRQADASIARRHGGTG 484

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           LGL + + +V    G+    S   +G+      PL
Sbjct: 485 LGLVITQKLVHEMGGEITFRSRTGRGSTFWFHIPL 519


>gi|16761737|ref|NP_457354.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29143221|ref|NP_806563.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213163046|ref|ZP_03348756.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|25308233|pir||AI0860 sensor protein [imported] - Salmonella enterica subsp. enterica
           serovar Typhi (strain CT18)
 gi|16504038|emb|CAD06072.1| sensor protein [Salmonella enterica subsp. enterica serovar Typhi]
 gi|29138854|gb|AAO70423.1| sensor protein [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
          Length = 918

 Score =  287 bits (735), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 87/333 (26%), Positives = 154/333 (46%), Gaps = 17/333 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +FG+ +   +  P    +               L   +   +             +++ +
Sbjct: 193 IFGWRLMRDVTGPIRNMVNTVDR-----IRRGQLDSRVEGFMLGELDMLKNGINSMAMSL 247

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 248 AAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTP 307

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+ +          NP   ++ N I+RS N +L I+ND+LD SK+E+GK+ L  
Sbjct: 308 LNGVIGFTRLTLKTEL----NPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILES 363

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P  L   + E ++L+   +++K + +  +  N++P  ++ D   ++Q+  N++ NAI F
Sbjct: 364 IPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPENVIGDPLRLQQVITNLVGNAIKF 423

Query: 719 TPSGGQ-IIISTTHTSNEEVILRV--RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T SG   I++     SN +V + V  RDTG+G+   +  +  + F Q   S   R  GTG
Sbjct: 424 TESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTG 483

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           LGL + + +V+   G     S P +G+      
Sbjct: 484 LGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516


>gi|78213638|ref|YP_382417.1| multi-sensor signal transduction histidine kinase [Synechococcus
           sp. CC9605]
 gi|78198097|gb|ABB35862.1| multi-sensor signal transduction histidine kinase [Synechococcus
           sp. CC9605]
          Length = 688

 Score =  287 bits (735), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 74/396 (18%), Positives = 169/396 (42%), Gaps = 45/396 (11%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            ++    ++  S++   +DG  +++ +G I+  N    +LF +    +  +     L + 
Sbjct: 290 EELTAAQVKQQSLIATMADGAMLLDADGRIVLANPTARRLFRWEGRSLEGQELVGELPEL 349

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDI 561
               ++  L  +L         + ++G     + L + +   +          ++T+ D+
Sbjct: 350 LAIELHSPLDALLGGGSDSEDLRCSVGEPA--RTLRIVLQAVRDASGETLKGIAVTIQDL 407

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           +                 + ++ +S F++ VSHE+RTPL  I  + E + +     L   
Sbjct: 408 TR--------------EVELNAAQSRFISNVSHELRTPLFNIKSYVETLHD-LGDQLSPD 452

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
              E+    +   + +  +VND+LD+S++ESG+  L FEP+S+  A+ + +   +L A +
Sbjct: 453 EQKEFLGVANDETDRLTRLVNDVLDLSRLESGR-TLQFEPISMRPAMEQTLRTYRLNAED 511

Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE------ 735
           + + +      ++P +L +   + Q+  N++ NA+ F+  GG + +      +       
Sbjct: 512 REVELVLDVPEDLPDVLGNWDLLLQVLDNLMGNALKFSRPGGPLALRAYPWPDTCSVEGT 571

Query: 736 -----------------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
                            ++ + + DTG G+++ + E+    F ++ N+      GTGLGL
Sbjct: 572 AITGTDGPTCALTSPLPKLRVEIADTGCGISSTDQERIFDRFFRVENAVHTEV-GTGLGL 630

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
            + + +++ +  +  + S P  GT      PL    
Sbjct: 631 SIVRGILEKHGAQVQMASEPEVGTTFWFDLPLAKAD 666


>gi|325496735|gb|EGC94594.1| sensory histidine kinase AtoS [Escherichia fergusonii ECD227]
          Length = 608

 Score =  287 bits (735), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 82/371 (22%), Positives = 160/371 (43%), Gaps = 28/371 (7%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
              +         I+E  +D +  I+R+G +++ N A   + GY  ++++ +P+      
Sbjct: 254 AEALRESKTLNDLIIENAADAVIAIDRQGDVITMNPAAEAITGYKRQELVGQPYATLFAN 313

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMH 559
                    L  +        LE    G     + + +     ++           +   
Sbjct: 314 THFYS--PVLDTLAHGIEHMALEISYPGRD---RTIEISATTSRIHDGHGEMIGALVIFS 368

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           D++  K+ + +L+  +++A        + +A V+HE+R PLTAI G+ ++I+ Q      
Sbjct: 369 DLTARKESQRRLAQTERLAT-----LGELMAGVAHEVRNPLTAIRGYVQIIRQQ----TP 419

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
            P + EY + +    + +  ++  LLD S+    +    ++ V L+  + E + L Q   
Sbjct: 420 QPEHQEYLSIVLNEIDSINKVIQQLLDFSRPRKSQ----WQQVYLNALIEETLILAQTSG 475

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
            + RI   T    ++  I+AD   +KQ+ LN+L NA+    + G+I I T   +  +  +
Sbjct: 476 VQARIDFITELDPSLTAIVADRELLKQVILNMLINAVQAITARGEIRIRTWMYTANQQAI 535

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            + D G G+      K   PF     S      GTGLGL L++ +++A+ G   + S P 
Sbjct: 536 TIEDNGCGIDLSLQRKIFDPFFTTKAS------GTGLGLALSQRIINAHQGDIRVASLPG 589

Query: 800 KGTLIEIIFPL 810
            G    +I P+
Sbjct: 590 CGATFTLILPI 600



 Score = 46.9 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 28/228 (12%), Positives = 55/228 (24%), Gaps = 7/228 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G +  ++       G    +++G     +    H    + + D L           
Sbjct: 278 IDRQGDVITMNPAAEAITGYKRQELVGQPYATLFANTHF--YSPVLDTLAHGIEHMALEI 335

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGF-RGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
            +P  G +  + I      I+  + E  G    F  +   +      A  +RL      +
Sbjct: 336 SYP--GRDRTIEISATTSRIHDGHGEMIGALVIFSDLTARKESQRRLAQTERLATLGELM 393

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
             +   H             Q              L+      D + K  +  L  S   
Sbjct: 394 AGV--AHEVRNPLTAIRGYVQIIRQQTPQPEHQEYLSIVLNEIDSINKVIQQLLDFSRPR 451

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
               Q+ +    + +         +Q       E              
Sbjct: 452 KSQWQQVYLNALIEETLILAQTSGVQARIDFITELDPSLTAIVADREL 499


>gi|254443264|ref|ZP_05056740.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
 gi|198257572|gb|EDY81880.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
          Length = 900

 Score =  287 bits (735), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 106/687 (15%), Positives = 236/687 (34%), Gaps = 53/687 (7%)

Query: 141 NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
           +T        P E  +    + L    I   +    G      V        P+A  +  
Sbjct: 99  DTQRFLRLEIPCENGSRVFCVTLEKERI---SGSEPG------VRCVAESIIPQATAQST 149

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
                   +   G S   + +   +            +  + L           +     
Sbjct: 150 QVLTDEAEDSSHGWSLNSESRQFEYFGSESSRASHPVSLDAWLACVVEKDRQEAEQAFNR 209

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL-SHRNHPSLSAYFDEGE 319
           +L+ +  S+  +      +                  E+ + L     +        E  
Sbjct: 210 ILSGDTESINVRYRITLPSGTIRRVSTLARRASAFGDETLKSLIGMHQYERDKQSVVEDL 269

Query: 320 NLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
            L      K  +   VY   G + + N +F   T Y+  + I      ++LL  P +++ 
Sbjct: 270 KLFSYLARKVQLSILVYDPQGYISWCNNAFTENTGYEFEEIIGRDP--NSLLRGP-MTEV 326

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
           + +  +          A  A L   + N      +        +   +       + +  
Sbjct: 327 DTVNYMRARIRKGK--AFHAELVQYKKNGAPY-WVRIDGNPLVDDDGKLTRFISFQTDIT 383

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRKPF 497
           +++  +  +    ++  S+ + ++D + +++  +G+I+  NRA  +L       ++ +  
Sbjct: 384 ESKKIQSTILRNEIKFRSLFDNSTDALLLLSPKDGVIIEANRASIQLL--DTNRLVGQRL 441

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT 557
                +N    ++H    I   D  +      + +      + + +    +  +    +T
Sbjct: 442 EEIFPENEDFRIDHLNELIDESDGTRRESGEFITADGNIHPVEMTVSRTPIGEAIALFVT 501

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
           + D+SE +  + +L H +++              ++H+    L    GFSE++ N R   
Sbjct: 502 LRDVSEKRLLEEQLRHTQRM-----EAVGRLAGGIAHDFNNLLAGQRGFSELLCNSRALS 556

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
             +     YAN I +  +    + + LL  S+ +S K  +     +L++ ++  + ++  
Sbjct: 557 KKDHV---YANEILKITDRASKLTSRLLSFSRGKSDKPVVA----NLNDTIANMMPML-T 608

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSN---AIHFTP------------SG 722
              +K +   +    N+  +  D   + Q+ +N++ N   AI  +             SG
Sbjct: 609 RILKKDVRFTSQLDPNLGNVKVDTNQIDQVIMNLVVNGQEAISASDGVVTLKTTMVELSG 668

Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
            ++ I+    +   V + VRD G G+    LEK  +PF         +G GTGLGL +  
Sbjct: 669 SELFITGKPKAGRYVKVAVRDNGQGIPREVLEKIFEPFFTTK-----KGAGTGLGLSIVY 723

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFP 809
            ++ +N G   + S+   GT     FP
Sbjct: 724 GIIQSNGGHIMVDSSIGNGTEFAFYFP 750



 Score = 67.7 bits (164), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 38/269 (14%), Positives = 80/269 (29%), Gaps = 12/269 (4%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL--HIDPNNHIGDLLKRQNTWYGKT 147
           D  GY+   +    +  G    ++IG     +       +D  N++   +++   ++ + 
Sbjct: 287 DPQGYISWCNNAFTENTGYEFEEIIGRDPNSLLRGPMTEVDTVNYMRARIRKGKAFHAEL 346

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
             +   G   +V ID    P+   + + + F  F            ++   R + KF  L
Sbjct: 347 VQYKKNGAPYWVRID--GNPLVDDDGKLTRFISFQT--DITESKKIQSTILRNEIKFRSL 402

Query: 208 HE-IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS--LTEYYAHKDDVLKTEKYPLLTS 264
            +        +  +   I         L   N++    L E +   +D        L+  
Sbjct: 403 FDNSTDALLLLSPKDGVIIEANRASIQLLDTNRLVGQRLEEIFPENEDFRIDHLNELIDE 462

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQ-NNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
            + +  E  +F T + N +  +          +   F  L   +   L            
Sbjct: 463 SDGTRRESGEFITADGNIHPVEMTVSRTPIGEAIALFVTLRDVSEKRLLEEQLRHTQRME 522

Query: 324 ETVDKCPIPFFVYSHGNLFYANPSFLLLT 352
             V +       +   NL      F  L 
Sbjct: 523 A-VGRLAGGIA-HDFNNLLAGQRGFSELL 549


>gi|71278636|ref|YP_270772.1| hybrid sensory histidine kinase BarA [Colwellia psychrerythraea
           34H]
 gi|71144376|gb|AAZ24849.1| sensor histidine kinase/response regulator [Colwellia
           psychrerythraea 34H]
          Length = 948

 Score =  287 bits (735), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 81/244 (33%), Positives = 126/244 (51%), Gaps = 10/244 (4%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +LS +K+ A++ +  KS+FLA +SHE+RTPL  +IGF+  +              +Y   
Sbjct: 289 ELSISKRKAQEANRVKSEFLANMSHELRTPLNGVIGFTRQVLKTPL----TENQRDYLQT 344

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           IDRS N +L I+ND+LD SK+++GKM     P SL E++ E ++L+   A++K I +  +
Sbjct: 345 IDRSANNLLTIINDILDFSKLDAGKMVTENIPFSLRESIDETLTLLAPSAHKKNIELSIN 404

Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS----NEEVILRVRDT 744
               +P  ++ D   +KQI  N++SNAI FTP G  + +  T       N ++ + V DT
Sbjct: 405 LPQELPDSLVGDTMRIKQIITNLVSNAIKFTPQGS-VAVDITSEEISQNNIKLKVIVTDT 463

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+GMT  +       F Q   S      GTGLGL + + +     G     S    G+  
Sbjct: 464 GIGMTTNQQRTIFDAFTQADQSITRLYGGTGLGLVICQRLAQEMNGDIGFSSEKNHGSSF 523

Query: 805 EIIF 808
              F
Sbjct: 524 WFTF 527


>gi|84385848|ref|ZP_00988878.1| putative histidine kinase [Vibrio splendidus 12B01]
 gi|84379164|gb|EAP96017.1| putative histidine kinase [Vibrio splendidus 12B01]
          Length = 1059

 Score =  287 bits (735), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 83/248 (33%), Positives = 136/248 (54%), Gaps = 10/248 (4%)

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
                AK  A + S  KS FLA +SHEIRTPL  +IG SE++ +    P       +Y +
Sbjct: 379 EDAEKAKDHAIQASKAKSSFLANMSHEIRTPLNGVIGISEILADTPLTPT----QRDYVD 434

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I+ S  L+L ++ND+LD SKIESG + +     S+ E++ +  S+V   A E++I +  
Sbjct: 435 TIETSSQLLLSLINDILDFSKIESGMLLISPHSASIRESIYDIASIVAPKAKEQKISVNV 494

Query: 689 SFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILR--VRDT 744
             + + P R++ D   ++QI +N +SNA+ FT  GG  + I T   S++ V +R  VRDT
Sbjct: 495 DISPDTPARVMIDDHRLRQILMNFMSNAVKFTAEGGVTLSIKTLEQSDDNVTIRFAVRDT 554

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G+   + ++  +PF Q  +S   +  GTGLGL ++  +V+   G+  + S   +G+  
Sbjct: 555 GIGIDKQQQKQIFEPFAQEDDSTTRQFGGTGLGLAISTQLVELMGGQIQLDSVKGEGSCF 614

Query: 805 EI--IFPL 810
                 P+
Sbjct: 615 YFDLELPV 622


>gi|330806709|ref|YP_004351171.1| alginate biosynthesis sensor protein [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327374817|gb|AEA66167.1| Putative alginate biosynthesis sensor protein [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 596

 Score =  287 bits (735), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 93/478 (19%), Positives = 186/478 (38%), Gaps = 29/478 (6%)

Query: 335 VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394
           V  +G +     +   +++ ++    E A  +S LL     +            + R   
Sbjct: 142 VLRNGLIEGYRQALTNISETQNRAR-ERAMWISGLLGLVGFAVLIIGFITAHGIARRFGA 200

Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK--RKMEIEVM 452
              A         + +  +T  P   A +      + G+  E +         ++     
Sbjct: 201 PIEALAAAADDIGQGNFEVTL-PVSSAAELNLLTRRFGVMAEALREHQATNVDELLAGQQ 259

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
           +L ++L++  DG+ +I+R+G +   N    +  G+  E + +              ++  
Sbjct: 260 RLQAVLDSIDDGLLMIDRQGQLEHLNPVAQRQLGWDEERLGQGLGEALGRLELDEELHLV 319

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNK 570
           L         + L         E ++L+  +              + +HD++E +  +  
Sbjct: 320 LRGGSLERAPEDLSIEV---DGESRVLTYSLTPVSHTQGHILGAVMVLHDVTEQRAFE-- 374

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
                         +S+F+ R SHE+RTP+T  +  +  +  +R       R  +  N +
Sbjct: 375 ------------RVRSEFVLRASHELRTPVTG-MHMAFGLLQERLHFSEESREADLLNTV 421

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
                 ++ ++NDLL+ S+ ++G   L   P S+DE +  A       A  K I +  + 
Sbjct: 422 TEEMQRLMQLINDLLNFSRYQNGLQKLTLAPCSIDELLEAARLRFAEQAQTKGIELLVAI 481

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
              +PR+ AD   + ++  N++ NA+  T   GQI +       E VI+ V D G G+  
Sbjct: 482 QGPLPRLHADAAQLDRVLDNLIDNAMRHTAENGQIRLQ-ARRHGERVIISVEDNGEGIAY 540

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            +  +  +PF Q+      +  G GLGL L K +V  + G+  ++S P +GT   +  
Sbjct: 541 GQQGRIFEPFVQV----GRKKGGAGLGLALCKEIVQLHGGRMGVYSRPGQGTQFYMAL 594



 Score = 47.3 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 25/242 (10%), Positives = 69/242 (28%), Gaps = 11/242 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG-KT 147
           ID  G L+ ++    + +G    + +G  L +    L +D   H+  +L+  +     + 
Sbjct: 275 IDRQGQLEHLNPVAQRQLGWD-EERLGQGLGEALGRLELDEELHL--VLRGGSLERAPED 331

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
               ++G +  +    +  P+        G     ++H          +  R +      
Sbjct: 332 LSIEVDGESRVL--TYSLTPVSHTQGHILGA--VMVLHDVTEQRAFERV--RSEFVLRAS 385

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
           HE+ +   +     + +  ++        +  + +       +   L  +       +  
Sbjct: 386 HEL-RTPVTGMHMAFGLLQERLHFSEESREADLLNTVTEEMQRLMQLINDLLNFSRYQNG 444

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
                    +I+      +  F                   P L A   + + +    +D
Sbjct: 445 LQKLTLAPCSIDELLEAARLRFAEQAQTKGIELLVAIQGPLPRLHADAAQLDRVLDNLID 504

Query: 328 KC 329
             
Sbjct: 505 NA 506


>gi|260173568|ref|ZP_05759980.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|315921835|ref|ZP_07918075.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|313695710|gb|EFS32545.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
          Length = 1007

 Score =  287 bits (735), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 121/723 (16%), Positives = 236/723 (32%), Gaps = 50/723 (6%)

Query: 105 TIGNYAFKMIGMRL-CDVSDILHIDPNNHIGDLLKRQNTWY---GKTTLWPIEGTNLYVP 160
             G    K + M L  +            + + +     +        + P   ++ +  
Sbjct: 167 LNGYDQSKPVSMALYLETLHPDDRSQVTEVMERMSNGEDFSFSFDSRVMLP--DSSTWQF 224

Query: 161 IDLAALPI-YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEK 219
             ++  P  +  N++   +   G    N            +         IK     VE 
Sbjct: 225 CTISGAPYEFDSNKKVLKY--VGTRKNNTEVQKKEQFFYNILNNLPLSVHIK----DVEN 278

Query: 220 EKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTIN 279
           +   +F  +            ++       + + ++     +  +       +     I 
Sbjct: 279 DFRYVFCNEESKLMFGTSEDKTTYDVLSEEEVERIQKTDLEVYNTGNPYFGME---RIIL 335

Query: 280 LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG 339
            +  +                  L+ R   SL         L   T++      + +   
Sbjct: 336 KDGRSYDTIVRKSIIEDDGKRFLLNTRWDQSLQNELKRRAQLLTVTMEAMNAFTWFFEPA 395

Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399
               +          K+ +   +   L+  L  P      A                  R
Sbjct: 396 KNRVSFGEGFDKNGKKASEINSVEKYLT--LVHPDDRQKFAETLQKAVELGSGVWDVEYR 453

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM------- 452
           +               +               G+       +  +  +            
Sbjct: 454 IDFKGDGMYQWWETRGLVETTTLNDAPYKYLFGMTQNIDSYKQTELTLLKNKEIQDALVR 513

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSK----LFGYPVEDILRKPFTVFLEQNTPSV 508
           Q   +L  T+ G+A I +E ++   N ++         Y   ++  K            V
Sbjct: 514 QNELVLNNTNSGLAYITKEYMVQWENISLCSKSLSFEAYKKGELCYKSTYNRTSPCENCV 573

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQ 566
           M      + +  ++ +L+            + +      L         + + D++E ++
Sbjct: 574 MQRAFVSLQTEQMKFSLD--------SAHTVEVFATPVVLEDGSVDGVVIRVDDVTEREK 625

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
              +L  AK  AE+    KS FLA +SHEIRTPL AI+GFSE++        G     +Y
Sbjct: 626 MIKELQEAKHQAEQSDKLKSAFLANMSHEIRTPLNAIVGFSELMAY-----AGEEEKADY 680

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
              I+ +  L+L ++ND+LD+SK+E+G + L +EP  L E      + ++       I++
Sbjct: 681 IQIINSNNELLLKLINDILDLSKLEAGSVELKYEPFDLSEHFENMFTSMKQRLKNPDIVL 740

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
                 +  ++  D   V QI  N ++NAI +T  G  I +         V   V+DTG+
Sbjct: 741 TEINPYHCCQVTLDRNRVAQIITNYVTNAIKYTSKGS-IKMGYACKDGG-VYFYVKDTGI 798

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+ + +  K  + F ++        +GTGLGL + KA+ +A  GK    S   +G+L   
Sbjct: 799 GIADDKKGKVFQRFEKLD----EFAQGTGLGLSICKAIAEAMGGKVGFESVHNEGSLFWA 854

Query: 807 IFP 809
             P
Sbjct: 855 FLP 857



 Score = 70.8 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 49/528 (9%), Positives = 124/528 (23%), Gaps = 55/528 (10%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL- 149
           A G L   +E   +  G  +  ++G     ++   +    + + + ++R           
Sbjct: 22  ADGTLVRCNESFCRIFGADSQTLLG---NKLNINENSVVPDVVKEAVRRCVPVQMSFLYD 78

Query: 150 WPIEGTNLYV--------PIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
           +  + T+            +     P+Y  + +F  +    I            + ++  
Sbjct: 79  FDKQRTDKRFFSTRTRTCYLKCNGNPLYDNDGKFVNY--IFIFEDITETVKSEEVLRQSR 136

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFS-QQSPPPHLRMKNKV--SSLTEYYAHKDDVLKTEK 258
           +K     +              +F     P         V  +   E     D    TE 
Sbjct: 137 RKTELAMKAANIMFWEFDAVPKLFYSDNEPLNGYDQSKPVSMALYLETLHPDDRSQVTEV 196

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
              +++ E      +    +  +   +             + + L +      +    + 
Sbjct: 197 MERMSNGEDFSFSFDSRVMLPDSSTWQFCTISGAPYEFDSNKKVLKYVGTRKNNTEVQKK 256

Query: 319 ENLTPETVDKCPIPFFVYS---HGNLFYANPSFLLLTKYKSV----DDI--EIAGGLSTL 369
           E      ++  P+   +          + N    L+          D +  E    +   
Sbjct: 257 EQFFYNILNNLPLSVHIKDVENDFRYVFCNEESKLMFGTSEDKTTYDVLSEEEVERIQKT 316

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
                 + N       +   D        R   I+ + +  L  T               
Sbjct: 317 DLEVYNTGNPYFGMERIILKDGRSYDTIVRKSIIEDDGKRFLLNTRWDQSL--------- 367

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
                         + +++     L   +EA +            +S      K      
Sbjct: 368 --------------QNELKRRAQLLTVTMEAMNAFTWFFEPAKNRVSFGEGFDKNGKKAS 413

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS------LRI 543
           E    + +   +  +        L + + L       +  +    +           +  
Sbjct: 414 EINSVEKYLTLVHPDDRQKFAETLQKAVELGSGVWDVEYRIDFKGDGMYQWWETRGLVET 473

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
                           +I  +KQ +  L   K+I +         L  
Sbjct: 474 TTLNDAPYKYLFGMTQNIDSYKQTELTLLKNKEIQDALVRQNELVLNN 521



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 50/145 (34%), Gaps = 9/145 (6%)

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
           +E  QL ++  +   GI     +G ++  N +  ++FG   + +L     +      P V
Sbjct: 1   MEHKQLLTVFNSLPVGIGFFTADGTLVRCNESFCRIFGADSQTLLGNKLNINENSVVPDV 60

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTK-----EEKLLSLRIIIKKLPFSSC----YSLTMH 559
           +   +   + + +    +     + K       +   L+     L  +      Y     
Sbjct: 61  VKEAVRRCVPVQMSFLYDFDKQRTDKRFFSTRTRTCYLKCNGNPLYDNDGKFVNYIFIFE 120

Query: 560 DISEWKQEKNKLSHAKKIAEKESSH 584
           DI+E  + +  L  +++  E     
Sbjct: 121 DITETVKSEEVLRQSRRKTELAMKA 145


>gi|160886321|ref|ZP_02067324.1| hypothetical protein BACOVA_04329 [Bacteroides ovatus ATCC 8483]
 gi|156108206|gb|EDO09951.1| hypothetical protein BACOVA_04329 [Bacteroides ovatus ATCC 8483]
          Length = 1007

 Score =  287 bits (735), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 121/723 (16%), Positives = 236/723 (32%), Gaps = 50/723 (6%)

Query: 105 TIGNYAFKMIGMRL-CDVSDILHIDPNNHIGDLLKRQNTWY---GKTTLWPIEGTNLYVP 160
             G    K + M L  +            + + +     +        + P   ++ +  
Sbjct: 167 LNGYDQSKPVSMALYLETLHPDDRSQVTEVMERMSNGEDFSFSFDSRVMLP--DSSTWQF 224

Query: 161 IDLAALPI-YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEK 219
             ++  P  +  N++   +   G    N            +         IK     VE 
Sbjct: 225 CTISGAPYEFDSNKKVLKY--VGTRKNNTEVQKKEQFFYNILNNLPLSVHIK----DVEN 278

Query: 220 EKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTIN 279
           +   +F  +            ++       + + ++     +  +       +     I 
Sbjct: 279 DFRYVFCNEESKLMFGTSEDKTTYDVLSEEEVERIQKTDLEVYNTGNPYFGME---RIIL 335

Query: 280 LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG 339
            +  +                  L+ R   SL         L   T++      + +   
Sbjct: 336 KDGRSYDTIVRKSIIEDDGKRFLLNTRWDQSLQNELKRRAQLLTVTMEAMNAFTWFFEPA 395

Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399
               +          K+ +   +   L+  L  P      A                  R
Sbjct: 396 KNRVSFGEGFDKNGKKASEINSVEKYLT--LVHPDDRQKFAETLQKAVELGSGVWDVEYR 453

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM------- 452
           +               +               G+       +  +  +            
Sbjct: 454 IDFKGDGMYQWWETRGLVETTTLNDAPYKYLFGMTQNIDSYKQTELTLLKNKEIQDALVR 513

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSK----LFGYPVEDILRKPFTVFLEQNTPSV 508
           Q   +L  T+ G+A I +E ++   N ++         Y   ++  K            V
Sbjct: 514 QNELVLNNTNSGLAYITKEYMVQWENISLCSKSLSFEAYKKGELCYKSTYNRTSPCENCV 573

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQ 566
           M      + +  ++ +L+            + +      L         + + D++E ++
Sbjct: 574 MQRAFVSLQTEQMKFSLD--------SAHTVEVFATPVVLEDGSVDGVVIRVDDVTEREK 625

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
              +L  AK  AE+    KS FLA +SHEIRTPL AI+GFSE++        G     +Y
Sbjct: 626 MIKELQEAKHQAEQSDKLKSAFLANMSHEIRTPLNAIVGFSELMAY-----AGEEEKADY 680

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
              I+ +  L+L ++ND+LD+SK+E+G + L +EP  L E      + ++       I++
Sbjct: 681 IQIINSNNELLLKLINDILDLSKLEAGSVELKYEPFDLSEHFENMFTSMKQRLKNPDIVL 740

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
                 +  ++  D   V QI  N ++NAI +T  G  I +         V   V+DTG+
Sbjct: 741 TEINPYHCCQVTLDRNRVAQIITNYVTNAIKYTSKGS-IKMGYACKDGG-VYFYVKDTGI 798

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+ + +  K  + F ++        +GTGLGL + KA+ +A  GK    S   +G+L   
Sbjct: 799 GIADDKKGKVFQRFEKLD----EFAQGTGLGLSICKAIAEAMGGKVGFESVHNEGSLFWA 854

Query: 807 IFP 809
             P
Sbjct: 855 FLP 857



 Score = 70.8 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 49/528 (9%), Positives = 124/528 (23%), Gaps = 55/528 (10%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL- 149
           A G L   +E   +  G  +  ++G     ++   +    + + + ++R           
Sbjct: 22  ADGTLVRCNESFCRIFGADSQTLLG---NKLNINENSVVPDVVKEAVRRCVPVQMSFLYD 78

Query: 150 WPIEGTNLYV--------PIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
           +  + T+            +     P+Y  + +F  +    I            + ++  
Sbjct: 79  FDKQRTDKRFFSTRTRTCYLKCNGNPLYDNDGKFVNY--IFIFEDITETVKSEEVLRQSR 136

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFS-QQSPPPHLRMKNKV--SSLTEYYAHKDDVLKTEK 258
           +K     +              +F     P         V  +   E     D    TE 
Sbjct: 137 RKTELAMKAANIMFWEFDAVPKLFYSDNEPLNGYDQSKPVSMALYLETLHPDDRSQVTEV 196

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
              +++ E      +    +  +   +             + + L +      +    + 
Sbjct: 197 MERMSNGEDFSFSFDSRVMLPDSSTWQFCTISGAPYEFDSNKKVLKYVGTRKNNTEVQKK 256

Query: 319 ENLTPETVDKCPIPFFVYS---HGNLFYANPSFLLLTKYKSV----DDI--EIAGGLSTL 369
           E      ++  P+   +          + N    L+          D +  E    +   
Sbjct: 257 EQFFYNILNNLPLSVHIKDVENDFRYVFCNEESKLMFGTSEDKTTYDVLSEEEVERIQKT 316

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
                 + N       +   D        R   I+ + +  L  T               
Sbjct: 317 DLEVYNTGNPYFGMERIILKDGRSYDTIVRKSIIEDDGKRFLLNTRWDQSL--------- 367

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
                         + +++     L   +EA +            +S      K      
Sbjct: 368 --------------QNELKRRAQLLTVTMEAMNAFTWFFEPAKNRVSFGEGFDKNGKKAS 413

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS------LRI 543
           E    + +   +  +        L + + L       +  +    +           +  
Sbjct: 414 EINSVEKYLTLVHPDDRQKFAETLQKAVELGSGVWDVEYRIDFKGDGMYQWWETRGLVET 473

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
                           +I  +KQ +  L   K+I +         L  
Sbjct: 474 TTLNDAPYKYLFGMTQNIDSYKQTELTLLKNKEIQDALVRQNELVLNN 521



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 50/145 (34%), Gaps = 9/145 (6%)

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
           +E  QL ++  +   GI     +G ++  N +  ++FG   + +L     +      P V
Sbjct: 1   MEHKQLLTVFNSLPVGIGFFTADGTLVRCNESFCRIFGADSQTLLGNKLNINENSVVPDV 60

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTK-----EEKLLSLRIIIKKLPFSSC----YSLTMH 559
           +   +   + + +    +     + K       +   L+     L  +      Y     
Sbjct: 61  VKEAVRRCVPVQMSFLYDFDKQRTDKRFFSTRTRTCYLKCNGNPLYDNDGKFVNYIFIFE 120

Query: 560 DISEWKQEKNKLSHAKKIAEKESSH 584
           DI+E  + +  L  +++  E     
Sbjct: 121 DITETVKSEEVLRQSRRKTELAMKA 145


>gi|113475172|ref|YP_721233.1| multi-sensor signal transduction histidine kinase [Trichodesmium
           erythraeum IMS101]
 gi|110166220|gb|ABG50760.1| multi-sensor signal transduction histidine kinase [Trichodesmium
           erythraeum IMS101]
          Length = 716

 Score =  287 bits (735), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 84/443 (18%), Positives = 171/443 (38%), Gaps = 69/443 (15%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           + N  K+  E  +L +++   +DG  +++    ++  N    ++F +  + ++    T  
Sbjct: 271 KQNIEKLTAEKAKLETLVSTIADGALLLDANLQLILVNPTARRIFSWEEKKVIGGKVTDN 330

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT--- 557
           L       +N  L +I +    +  E         ++ + + +    L  +S        
Sbjct: 331 LPVAVQMELNRPLYQI-ATGEIEGGEYRCTLDEPNKRTIRVLLTTVLLYRASGTESLCKS 389

Query: 558 -MHD---------------------------ISEWK---QEKNKLSHAKKIAEKESSHKS 586
            ++D                           IS ++   +             + +  KS
Sbjct: 390 CIYDAYDSCSSANRPVVYECTLYENKLGTDFISPYRNSLKGIAMTVQDITREVELNDAKS 449

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
            F++ VSHE+RTPL  I  F E + ++    L      E+    +   + +  +VND+LD
Sbjct: 450 QFISNVSHELRTPLFNIKSFIETL-HEYGEDLSEVERREFLETANHETDRLTRLVNDVLD 508

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706
           +S++ES  M  H   V + + + + +    L A +K+I +     +N+P ++     + Q
Sbjct: 509 LSRLES-CMIYHLNAVDVAQPIEQTLRTYHLNAKDKKIELNYDIESNLPTVVGHYDLLLQ 567

Query: 707 IALNILSNAIHFTPSGGQIIIST----------THTSNEE-------------------- 736
           +  N++ NA+ FT  GG+I+I                                       
Sbjct: 568 VFANLVGNAMKFTEPGGRIVIRAYLLESDIEIEQIEQGGWIVSPPPPRPTELNLKSNNQF 627

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           V + + DTG G+   + E   + F ++ N +    EGTGLGL + + ++D +  K  + S
Sbjct: 628 VRIEISDTGSGIEPEDQEAIFERFFRVEN-RVHTLEGTGLGLSIVRNIIDKHHSKVNLVS 686

Query: 797 TPAKGTLIEIIFPLYDT-SHPHD 818
               GT       +++  S P +
Sbjct: 687 ELGVGTTFWFDLAVFEERSVPEE 709


>gi|28867566|ref|NP_790185.1| sensory box histidine kinase [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|28850801|gb|AAO53880.1| sensory box histidine kinase [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 595

 Score =  287 bits (735), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 89/426 (20%), Positives = 176/426 (41%), Gaps = 30/426 (7%)

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK--R 445
            + R      A         E    +T  P   A +      + GI  E +         
Sbjct: 193 IARRFGAPIEALAKAADRIGEGDYEVTL-PISSAAEMNLLTRRFGIMAEALRQHQATNVD 251

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           ++     +L ++L++  DG+ +I+R+G +   N    +  G+    +  +     L   +
Sbjct: 252 ELLAGQQRLQAVLDSIDDGLLMIDRQGHLEHLNPVAQRQLGWDESRL-GQSLGEAL---S 307

Query: 506 PSVMNHYLTEILSLDL-RQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDIS 562
              ++  L  +L      +  E + +    E +LL+  +              + +HD++
Sbjct: 308 RPELDEQLHLVLRGGTLERAPEDLAIDIDGESRLLTYSMTPVSHTKGHILGAVMVLHDVT 367

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E +  +                +S+F+ R SHE+RTP+T  +  +  +  +R       R
Sbjct: 368 EQRAFE--------------RVRSEFVLRASHELRTPVTG-MHMAFGLLQERLHFAPESR 412

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             +  N +      ++ ++NDLL+ S+ ++G   L   P S++  + EA +  +  A E+
Sbjct: 413 EADLLNTVTEEMQRLMQLINDLLNFSRYQNGLQKLKLAPCSIETLLEEARARYEGQAQEQ 472

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
            I++       +PR+ AD   ++++  N+L NA+  TP  G I +       E  I+ V 
Sbjct: 473 EIVLMLDIQEPMPRLHADQSQLERVLDNLLDNALRHTPPNGLIRLQ-ARRHGERAIISVE 531

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G G+   +  +  +PF Q+      +  G GLGL L K +V  + G+  ++S P +GT
Sbjct: 532 DNGEGIAYGQQGRIFEPFVQV----GRKKGGAGLGLALCKEIVQLHGGRMGVYSRPGQGT 587

Query: 803 LIEIIF 808
              +  
Sbjct: 588 QFYMAL 593



 Score = 46.6 bits (109), Expect = 0.017,   Method: Composition-based stats.
 Identities = 29/241 (12%), Positives = 70/241 (29%), Gaps = 9/241 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G+L+ ++    + +G    + +G  L +      +D       L+ R  T      
Sbjct: 274 IDRQGHLEHLNPVAQRQLGWDESR-LGQSLGEALSRPELDEQ---LHLVLRGGTLERAPE 329

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
              I+       +  +  P+        G     ++H          +  R +      H
Sbjct: 330 DLAIDIDGESRLLTYSMTPVSHTKGHILGA--VMVLHDVTEQRAFERV--RSEFVLRASH 385

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           E++   + +      +  +    P  R  + ++++TE    +   L  +       +   
Sbjct: 386 ELRTPVTGMHMAFGLLQERLHFAPESREADLLNTVTE-EMQRLMQLINDLLNFSRYQNGL 444

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
              +    +I       +  +       +           P L A   + E +    +D 
Sbjct: 445 QKLKLAPCSIETLLEEARARYEGQAQEQEIVLMLDIQEPMPRLHADQSQLERVLDNLLDN 504

Query: 329 C 329
            
Sbjct: 505 A 505


>gi|62181468|ref|YP_217885.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|62129101|gb|AAX66804.1| sensory histidine kinase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|322715952|gb|EFZ07523.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 918

 Score =  287 bits (735), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 87/333 (26%), Positives = 154/333 (46%), Gaps = 17/333 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +FG+ +   +  P    +               L   +   +             +++ +
Sbjct: 193 IFGWRLMRDVTGPIRNMVNTVDR-----IRRGQLDSRVEGFMLGELDMLKNGINSMAMSL 247

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 248 AAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTP 307

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+ +          NP   ++ N I+RS N +L I+ND+LD SK+E+GK+ L  
Sbjct: 308 LNGVIGFTRLTLKTEL----NPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILES 363

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P  L   + E ++L+   +++K + +  +  N++P  ++ D   ++Q+  N++ NAI F
Sbjct: 364 IPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKF 423

Query: 719 TPSGGQ-IIISTTHTSNEEVILRV--RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T SG   I++     SN +V + V  RDTG+G+   +  +  + F Q   S   R  GTG
Sbjct: 424 TESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTG 483

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           LGL + + +V+   G     S P +G+      
Sbjct: 484 LGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516


>gi|324325033|gb|ADY20293.1| sensor histidine kinase [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 896

 Score =  287 bits (735), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 79/338 (23%), Positives = 147/338 (43%), Gaps = 18/338 (5%)

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            +D++ +            +    +  +L      T E        + +   L++  ++L
Sbjct: 395 HQDLIHQTVDNLGLTIHSIMGRMRIQTLLHESQAMTEELQVQSEELQTQAEELQMQAEEL 454

Query: 549 PFSSCYSLTMHDISEWKQEKN-----KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
             ++    +  + +E K         +L        + S +KS+FLA +SHE+RTPL +I
Sbjct: 455 RTTNEQLESRTEEAEQKTADLQVTKLELEEKASELLRSSKYKSEFLANMSHELRTPLNSI 514

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +  SE++K      L +    E A  I  SG  +L ++ND+LD+SK+E+GK+++ FE  +
Sbjct: 515 LLLSEMLKENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIFEATN 573

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSG 722
           + +  +         A +K +      ++ IP +   D + ++QI  N+LSNA  FT  G
Sbjct: 574 ISDMAASMQQNFLHIAAQKNVEFTVEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKG 633

Query: 723 GQ------IIISTTHTS-----NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
                   I  S           + + + V+DTG+G+   + +   + F Q   +   + 
Sbjct: 634 SVSLHFDSIETSNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGATIRKY 693

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            GTGLGL + K       G   + S   +G+   +  P
Sbjct: 694 GGTGLGLSICKEFARLLGGWITLQSHVGEGSTFTVYIP 731


>gi|323139543|ref|ZP_08074589.1| PAS/PAC sensor hybrid histidine kinase [Methylocystis sp. ATCC
           49242]
 gi|322395222|gb|EFX97777.1| PAS/PAC sensor hybrid histidine kinase [Methylocystis sp. ATCC
           49242]
          Length = 523

 Score =  287 bits (735), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 91/378 (24%), Positives = 154/378 (40%), Gaps = 19/378 (5%)

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
              L  I++     +  ++ EG ++  N A  +L G   E  + +    +    T   + 
Sbjct: 22  KQLLSQIMDHLPTAVYAVDTEGRLIYFNEAAKELSGREPEIGVDRWCVSWKLYRTDGSIL 81

Query: 511 HYLT---EILSLDLRQTLEKITLGSTKEEKLLSLRIIIK----KLPFSSCYSLTMHDISE 563
            +      +   + R+      +    +   + +   I+     L         + DI+E
Sbjct: 82  PHDECPVAVTLREHRKISGVEAIVERPDGSRVWIEPHIELLFDALGNVIGAVNVLIDITE 141

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            K+ +N L             K DFLA ++HE+R PL  I     V+  +   PL   R 
Sbjct: 142 RKRSENLLLD-------ADRRKDDFLALLAHELRNPLAPIHNAINVLMLEIATPLKVERG 194

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
           +   +  DR    ++ +V+DLLD+S+I  GK+ L    ++L +A   AI + +       
Sbjct: 195 MALLSMADRQVKHLIRLVDDLLDVSRITKGKIVLEKIKINLADAFHHAIEMARPEIERGG 254

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
             +R         I  D   + Q+  N+L+NA  FT     + +        EVI+ VRD
Sbjct: 255 HELRVQLPPEALEIEGDTVRIAQVFTNLLNNAAKFTKQPDILYLQAERRD-AEVIVAVRD 313

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGT 802
            GVG+    L K  + F QI    Q R  G G+GL L +++V+ + G     S    KG+
Sbjct: 314 NGVGIAPENLTKIFEAFAQIDTGHQSR--GLGIGLALVRSLVEMHGGTVAAHSGGYQKGS 371

Query: 803 LIEIIFPLYDTSHPHDCI 820
              +  PL   + P D I
Sbjct: 372 TFVVRLPLKPET-PRDPI 388



 Score = 46.9 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 16/137 (11%), Positives = 34/137 (24%), Gaps = 10/137 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGM---RLCDVSDILHIDPNNH--IGDLLKRQ 140
            + +D  G L   +E   +  G      +               I P++   +   L+  
Sbjct: 36  VYAVDTEGRLIYFNEAAKELSGREPEIGVDRWCVSWKLYRTDGSILPHDECPVAVTLREH 95

Query: 141 NTWYGKTTLW-PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199
               G   +    +G+   V I+     ++       G     I            L   
Sbjct: 96  RKISGVEAIVERPDGS--RVWIEPHIELLFDALGNVIGAVNVLI--DITERKRSENLLLD 151

Query: 200 LDKKFSHLHEIKKGHSS 216
            D++      +      
Sbjct: 152 ADRRKDDFLALLAHELR 168


>gi|49480178|ref|YP_035256.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|49331734|gb|AAT62380.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
          Length = 896

 Score =  287 bits (735), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 79/338 (23%), Positives = 147/338 (43%), Gaps = 18/338 (5%)

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            +D++ +            +    +  +L      T E        + +   L++  ++L
Sbjct: 395 HQDLIHQTVDNLGLTIHSIMGRMRIQTLLHESQAMTEELQVQSEELQTQAEELQMQAEEL 454

Query: 549 PFSSCYSLTMHDISEWKQEKN-----KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
             ++    +  + +E K         +L        + S +KS+FLA +SHE+RTPL +I
Sbjct: 455 RTTNEQLESRTEEAEQKTADLQVTKLELEEKASELLRSSKYKSEFLANMSHELRTPLNSI 514

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +  SE++K      L +    E A  I  SG  +L ++ND+LD+SK+E+GK+++ FE  +
Sbjct: 515 LLLSEMLKENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIFEATN 573

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSG 722
           + +  +         A +K +      ++ IP +   D + ++QI  N+LSNA  FT  G
Sbjct: 574 ISDMAASMQQNFLHIAAQKNVEFTVEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKG 633

Query: 723 GQ------IIISTTHTS-----NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
                   I  S           + + + V+DTG+G+   + +   + F Q   +   + 
Sbjct: 634 SVSLHFDSIETSNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGATIRKY 693

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            GTGLGL + K       G   + S   +G+   +  P
Sbjct: 694 GGTGLGLSICKEFARLLGGWITLQSHVGEGSTFTVYIP 731


>gi|1172485|sp|P45608|PHOR_KLEPN RecName: Full=Phosphate regulon sensor protein phoR
 gi|149296|gb|AAA25123.1| phosphate regulatory protein phoR (gtg start codon) [Klebsiella
           pneumoniae]
          Length = 431

 Score =  287 bits (735), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 74/427 (17%), Positives = 154/427 (36%), Gaps = 37/427 (8%)

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             +L       I     L  + W     L +         +        G+    +  + 
Sbjct: 33  WFLLAAVTGLLIWHFWNLMRLSW----WLWVDRSMTPPPGRGSWEPLLYGLHQMQMRNKK 88

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            +R++   + +  S  E+  D + +   EG I   N    ++      D   +     L 
Sbjct: 89  RRRELGSLIKRFRSGAESLPDAVVLTTEEGAIFWCNGLAQQILNLRWPDDSGQNILNLLR 148

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
                    +   +   D  + L  +   +        L I +        + +   D++
Sbjct: 149 YP------EFANYLKQRDFSKPLNLVLNNARH------LEIRVMPYTDKQ-WLMVARDVT 195

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  Q +                + +F A VSHE+RTPLT + G+ E+++ Q        +
Sbjct: 196 QMHQLEG--------------ARRNFFANVSHELRTPLTVLQGYLEMMQEQVLEGATREK 241

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                + +      +  +V  LL +S+IE+       + + +   +       Q  + EK
Sbjct: 242 A---LHTMREQTQRMEGLVKQLLTLSRIEAAPALAMNDRIDVPMMLRVVEREAQTLSQEK 298

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           +  +  +    + ++L +   ++    N++ NA++ TP G +I +S   T    +   V 
Sbjct: 299 Q-TLIFTVDEQL-KVLGNEEQLRSAISNLVYNAVNHTPPGTEIRVSWQRTPQGAL-FSVE 355

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G G+    +    + F +   ++  +  G+GLGL + K  V+ +  +  I ST  KGT
Sbjct: 356 DNGPGIAPEHIPLLTERFYRGDKARSRQTGGSGLGLAIVKHAVNHHDSRLEIDSTVGKGT 415

Query: 803 LIEIIFP 809
               + P
Sbjct: 416 RFSFLLP 422


>gi|261217919|ref|ZP_05932200.1| histidine kinase [Brucella ceti M13/05/1]
 gi|261321231|ref|ZP_05960428.1| histidine kinase [Brucella ceti M644/93/1]
 gi|260923008|gb|EEX89576.1| histidine kinase [Brucella ceti M13/05/1]
 gi|261293921|gb|EEX97417.1| histidine kinase [Brucella ceti M644/93/1]
          Length = 843

 Score =  287 bits (735), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 131/724 (18%), Positives = 263/724 (36%), Gaps = 49/724 (6%)

Query: 110 AFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN--TWYGKTTLWPIEGTNLYVPIDLAALP 167
              ++G                  G  L+ Q+        +    +     + ++     
Sbjct: 134 RADVVGQLPDACGAPQDRPAFLAFGRWLRPQSVTALERAISTLREQARAFDLTVETVNGS 193

Query: 168 IYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ 227
           +   +   SG  GF +    +     +A    L+ +   L +  +    +          
Sbjct: 194 LLDVHGRTSG--GFAVA-CFQSLQGVQAERASLEAQNRELADRIELMRRLLDRIEQPAWL 250

Query: 228 QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287
           +     +   N   +     A+    + +E   L  ++     E++ F    + +     
Sbjct: 251 RDGNGRIEWVNLAYAQAVDMANASQ-VISEGRELFGAQARQRLERDRFAEPVVQEQLTAV 309

Query: 288 YFGTLQ--------NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG 339
             G  +          S             ++            ET+D+      ++   
Sbjct: 310 VHGDRRVFDVIDVSAESGSVGLGFDLTEVQAVRDELSRTLKSHAETLDQLSTAVAIFDPE 369

Query: 340 -NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398
             L + N +F+ L     V  +E     + + D  +       +P      D    A  A
Sbjct: 370 MKLQFFNQAFVKLWGL-DVAWLETRPSNTLIFDRLRAEGKLPEQPEWRKWKDSLLSAYRA 428

Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI- 457
                    E    M  +P  +  +   N    G      +    K ++E     L  + 
Sbjct: 429 V--------EPEEHMWHLPDTRTMRVVANPHPQGGVTWFFENMTEKFELEGRYNTLIKVQ 480

Query: 458 ---LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYL 513
              L+  ++ +A+   +G +  +N + + L+  P E +      ++  +       +   
Sbjct: 481 GETLDHLAEAVAVYGSDGRLRLSNPSFAALWSLPSEMVREGTHISIIAKLCNQRGGDGLW 540

Query: 514 TEILSLDLRQTLEKITL---GSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570
            + +S       ++          +  +LS  ++           LT  D+++  + +  
Sbjct: 541 EDFVSTVTGFLDQRDGRMGQVELSDGAILSFAVVPLP---KGQTMLTFIDVTDTVRVERA 597

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           L    +  E     K+DF+  VS+E+R+PLT IIGF+E+++   FG L N R +EY ++I
Sbjct: 598 LKEKNEALELADQIKNDFVQHVSYELRSPLTNIIGFTELLQTPAFGSL-NERQLEYLDHI 656

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
             S +++L IVND+LD++ +++G M L    VS+ EA+S A S V     +  I +    
Sbjct: 657 STSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEAISAAASRVSERLRDHNIGLDVDI 716

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
           A+++    AD   V+Q+  N+LSNA+++ P G  I++        +V+  V D G GM +
Sbjct: 717 ADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVLQVA-RDGADVVFAVHDDGHGMPS 775

Query: 751 YELEKAMKPFGQIPN-----SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
             L+   K F   PN        +          + K+ V+ + G+  I +   +GT + 
Sbjct: 776 EVLDTVFKRFQSYPNGGRRRGAGLGLA-------IVKSFVELHGGRVEIDTGEERGTTVI 828

Query: 806 IIFP 809
             FP
Sbjct: 829 CRFP 832


>gi|221198738|ref|ZP_03571783.1| histidine kinase [Burkholderia multivorans CGD2M]
 gi|221205000|ref|ZP_03578016.1| histidine kinase [Burkholderia multivorans CGD2]
 gi|221174791|gb|EEE07222.1| histidine kinase [Burkholderia multivorans CGD2]
 gi|221181189|gb|EEE13591.1| histidine kinase [Burkholderia multivorans CGD2M]
          Length = 759

 Score =  287 bits (735), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 97/590 (16%), Positives = 198/590 (33%), Gaps = 28/590 (4%)

Query: 231 PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG 290
            P     +      +        +       L S  S++         ++ +        
Sbjct: 6   EPAPSGADHFVQFYDSVEQLLPEVVAFAGEALRSGGSAIVIVRADRLADVVERLGALVAA 65

Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLL 350
             +   +  F   +               +    +V            G   +A    + 
Sbjct: 66  IGEPARRRVFVSDAEALLARFMNGDMPDRDRFQRSVGAIVEAAIA--AGRPVHAFGEMVA 123

Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
           +   +   D       + L      ++        LY          A   T+  +    
Sbjct: 124 VLCARGQPD-------AALRLEALWNELIERHRFSLYCGYPHDAFPGAEQSTLFRHVCAL 176

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS-ILEATSDGIAII- 468
                      N   E      +  +       + +   +  +  + +L      IA++ 
Sbjct: 177 HRRVLPAASLRNDERELHLTLALSQQRSRALGAEIRRREDAERQRNGVLMHAPLPIALLA 236

Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528
             E  I+  N   S + G    DI+ +P    +       +   L +  +  +  T+ + 
Sbjct: 237 GPEHRIVLANHRFSAMCG--RTDIVGRPLAAVMPGADSPAVTRALDDARAHGVSTTIGEH 294

Query: 529 TLGSTKEE-KLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK------- 580
              +T E  ++  L    +         ++  +++E    + KL  A    ++       
Sbjct: 295 RDRATPEGARVYRLHFNPQPQADGIGVIVSAVEVTEHVAAREKLQAANAERDRLLAELRD 354

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            +  K  FLA + HE+R PLT I    E+++++      N         I R  + ++ +
Sbjct: 355 ANHAKDQFLAVLGHELRNPLTPISLALELVRSREGHATPNE-----IAIIQRQLDHMVRL 409

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILAD 700
           ++DLLD+S+I  GK+ L  E V L + V  A+ +      ++R  +      ++ R   D
Sbjct: 410 IDDLLDVSRITRGKIELKKEAVRLGDIVDRAVEVASPLLEQRRHRLHVDIDADV-RCHGD 468

Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760
              + Q+  N+L+NA  +T  GG I +       + +++ VRD+G G+    L+   +PF
Sbjct: 469 PVRLSQVVANLLTNAAKYTAPGGDIGLHVARGDGDTIVIEVRDSGAGIPPDRLDSIFEPF 528

Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFP 809
            ++         G G+GL L K+ V  + G     S  P  G+   +  P
Sbjct: 529 FRLGGEPGRMDGGLGIGLALVKSFVMLHGGTVRADSAGPGLGSTFTVTLP 578



 Score = 47.3 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 33/350 (9%), Positives = 70/350 (20%), Gaps = 28/350 (8%)

Query: 130 NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRV 189
            + +  LL     + G+       G+ + +        +  R        G         
Sbjct: 19  YDSVEQLLPEVVAFAGEAL--RSGGSAIVIVRADRLADVVERLGALVAAIGEP-ARRRVF 75

Query: 190 DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH 249
            +D  AL  R         +  +       E      +        +    +      A 
Sbjct: 76  VSDAEALLARFMNGDMPDRDRFQRSVGAIVEAAIAAGRPVHAFGEMVAVLCARGQPDAAL 135

Query: 250 KDDVLKTEKYPLLTS------EESSLPEQE---DFHTINLNQYTKKQYFGTLQNNSKESF 300
           + + L  E                + P  E    F  +               +  +   
Sbjct: 136 RLEALWNELIERHRFSLYCGYPHDAFPGAEQSTLFRHVCALHRRVLPAASLRNDERELHL 195

Query: 301 EYLSHRNHPSL-----SAYFDEGENLTPETVDK-CPIPFFVYSHGNLFYANPSFLLLTKY 354
                +              D         +    PI         +  AN  F  +   
Sbjct: 196 TLALSQQRSRALGAEIRRREDAERQRNGVLMHAPLPIALLAGPEHRIVLANHRFSAMCGR 255

Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
                     G       P        + +   R+                       + 
Sbjct: 256 TD------IVGRPLAAVMPGADSPAVTRALDDARAHGVSTTIGEHRDRATPEGARVYRLH 309

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
           F P  +A+     +       E  +    + K++    +   +L    D 
Sbjct: 310 FNPQPQADG----IGVIVSAVEVTEHVAAREKLQAANAERDRLLAELRDA 355



 Score = 40.0 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 23/257 (8%), Positives = 65/257 (25%), Gaps = 17/257 (6%)

Query: 82  TVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL---- 137
            +           +   +       G     ++G  L  V        +  +   L    
Sbjct: 229 PLPIALLAGPEHRIVLANHRFSAMCGRT--DIVGRPLAAVMPGAD---SPAVTRALDDAR 283

Query: 138 -KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRAL 196
               +T  G+              +     P                V V         L
Sbjct: 284 AHGVSTTIGEHRDRATPEGARVYRLHFNPQPQADGIGVIVSA-----VEVTEHVAAREKL 338

Query: 197 GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ-QSPPPHLRMKNKVSSLTEYYAHKDDVLK 255
                ++   L E++  + + ++    +  + ++P   + +  ++    E +A  +++  
Sbjct: 339 QAANAERDRLLAELRDANHAKDQFLAVLGHELRNPLTPISLALELVRSREGHATPNEIAI 398

Query: 256 TEKYPL-LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
            ++    +      L +        +    +    G + + + E    L  +    L   
Sbjct: 399 IQRQLDHMVRLIDDLLDVSRITRGKIELKKEAVRLGDIVDRAVEVASPLLEQRRHRLHVD 458

Query: 315 FDEGENLTPETVDKCPI 331
            D       + V    +
Sbjct: 459 IDADVRCHGDPVRLSQV 475


>gi|197106173|ref|YP_002131550.1| sensor histidine kinase DivJ [Phenylobacterium zucineum HLK1]
 gi|196479593|gb|ACG79121.1| sensor histidine kinase DivJ [Phenylobacterium zucineum HLK1]
          Length = 553

 Score =  287 bits (735), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 108/370 (29%), Positives = 182/370 (49%), Gaps = 11/370 (2%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
               R  +    +L   L+     +  +   G IL  N   + L G  V  +  +     
Sbjct: 178 ARADRARDEAETELREALDHQPQLLLTLYPGGRIL--NAFGADLLGRGVRGLKDERLPDL 235

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
           +       +   L         +                 L +  ++L  ++     + D
Sbjct: 236 VGFEDRLAVEEALHVAAHEGSAE--AAFVPAHDPNG---WLEVSFRRL-GANRIFAAVRD 289

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
               +  +++L  A+  AE++++ KS FLA +SHE+RTPL AI+GFS++++ + FGP+G+
Sbjct: 290 ARAQRAREHELEKARISAEQQNAGKSRFLANMSHELRTPLNAIMGFSDIMRQRLFGPMGD 349

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
            RY EYA  I  SG+ +L+++ND+LD+SKIE+ +  L  E     +AV   + L++  A 
Sbjct: 350 -RYGEYAELIHESGSHLLELINDVLDMSKIEAERFELAREDFDARDAVGAVLRLMRGQAE 408

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
              + +R           AD R+VKQI LN++SNA+ FTP GG + + T   + E + L 
Sbjct: 409 RAGVTLRAVMPPEPLEAEADRRAVKQITLNLISNALKFTPRGGTVTV-TAQGAGETLELI 467

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V D+GVG+   +LE+  +PF Q  ++QQ    G+GLGL L +A    + G+  I S   +
Sbjct: 468 VADSGVGIAPADLERLGRPFEQAGDAQQRAA-GSGLGLSLVRAFAALHGGEMAIESGVGE 526

Query: 801 GTLIEIIFPL 810
           GT + +  P+
Sbjct: 527 GTTVTVRMPV 536


>gi|254230528|ref|ZP_04923899.1| signal transduction histidine-protein kinase BarA [Vibrio sp. Ex25]
 gi|262393275|ref|YP_003285129.1| BarA sensory histidine kinase [Vibrio sp. Ex25]
 gi|151936953|gb|EDN55840.1| signal transduction histidine-protein kinase BarA [Vibrio sp. Ex25]
 gi|262336869|gb|ACY50664.1| BarA sensory histidine kinase [Vibrio sp. Ex25]
          Length = 932

 Score =  287 bits (735), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 82/252 (32%), Positives = 132/252 (52%), Gaps = 10/252 (3%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  AKK A++ +  KS+FLA +SHE+RTPL  +IGF+  +   +          +Y   
Sbjct: 276 ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLSN----SQTDYLQT 331

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I++S N +L+I+ND+LD SK+E+GK+ L   P    E++ E I+L    A+EK + I   
Sbjct: 332 IEKSANNLLNIINDILDFSKLEAGKLALENIPFDFRESLEEVINLQATSAHEKGLEITLK 391

Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT----SNEEVILRVRDT 744
               IP  ++ D   ++QI  N++ N+I FT  G  I +S         + E+   VRDT
Sbjct: 392 VDPKIPPGLVGDPLRIQQILTNLVGNSIKFTERG-NIDVSVEMRSQSGDSVELQFMVRDT 450

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G++  +  +  + F Q   S   R  GTGLGL + + +V    G+  + S   +G+  
Sbjct: 451 GIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTF 510

Query: 805 EIIFPLYDTSHP 816
                L+ T  P
Sbjct: 511 WFTVRLHSTEMP 522


>gi|307610618|emb|CBX00206.1| Legionella transmission sensor LetS [Legionella pneumophila 130b]
          Length = 909

 Score =  287 bits (735), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 79/248 (31%), Positives = 129/248 (52%), Gaps = 12/248 (4%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E K  +  L   K    ++S  KS+F+A +SHEIRTP+  +IGF+ V+   +  PL    
Sbjct: 277 EEKNIELSLEKKKTE--EKSRQKSEFIANMSHEIRTPMNGVIGFTNVLLESKLDPL---- 330

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
            ++Y   I  S   +L I+ND+LD SKI++GK+NL   P+ +   + E +SL    A++K
Sbjct: 331 QLDYVKTIKSSAQDLLSIINDILDFSKIDAGKLNLDCIPLDVRGCIDEVLSLASPNAHKK 390

Query: 683 RILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----V 737
            I +      N+P  +L D   +KQI  N+++NA+ FT  G  ++I T      +    +
Sbjct: 391 GIDLIPITDINVPKMVLGDPLRIKQIISNLVTNAVKFTDHG-YVLIRTKIEQETDKDYTL 449

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
           +  + DTG+G++  +  K    F Q   S   R  G+GLGL + K + +   G+  + S 
Sbjct: 450 LFAITDTGIGISPEDQTKLFTAFNQADTSITRRYGGSGLGLVICKKLCEEMHGRISLTSE 509

Query: 798 PAKGTLIE 805
             KG+   
Sbjct: 510 INKGSTFS 517


>gi|218438826|ref|YP_002377155.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
 gi|218171554|gb|ACK70287.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
          Length = 1285

 Score =  287 bits (735), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 81/285 (28%), Positives = 147/285 (51%), Gaps = 15/285 (5%)

Query: 532  STKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
               E++ +SL   + ++      ++      +  +   +L+ AK+ A+  +  KS+FLA 
Sbjct: 777  RHWEDREISL---MARVGDQLGVAM------QQAELLEQLTKAKETADAANKAKSEFLAN 827

Query: 592  VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
            +SHE+RTPL AI+GF++++         + +  EY   I RSG  +L ++ND+L++SKIE
Sbjct: 828  MSHELRTPLNAILGFTQLLARD---SSLSDKQHEYVGIIGRSGEHLLSLLNDVLEMSKIE 884

Query: 652  SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALN 710
            +G++ L+     L   ++    + QL A  K + +      ++P+ I  D   ++QI +N
Sbjct: 885  AGRITLNENHFDLYRLLNTLEEMFQLKAQSKGLQLIFDCHPDVPQYIKTDESKLRQILIN 944

Query: 711  ILSNAIHFTPSGGQI-IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
            ++ N I FT  G  I  +  +  S   +   V DTG+G+   EL+   +PF Q  + ++ 
Sbjct: 945  LIGNGIKFTEVGSVILRVKLSLLSTMTIDFEVEDTGLGIAPEELDTLFQPFIQTVSGRKS 1004

Query: 770  RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
            + EGTGLGLP+++  V    G   + S   KG++     P   + 
Sbjct: 1005 Q-EGTGLGLPISQKFVQLMGGNISVKSNLNKGSMFRFEIPFTQSE 1048


>gi|307292814|ref|ZP_07572660.1| PAS/PAC sensor signal transduction histidine kinase [Sphingobium
           chlorophenolicum L-1]
 gi|306880880|gb|EFN12096.1| PAS/PAC sensor signal transduction histidine kinase [Sphingobium
           chlorophenolicum L-1]
          Length = 781

 Score =  287 bits (735), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 113/747 (15%), Positives = 247/747 (33%), Gaps = 57/747 (7%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH--IDPNNHIGDLLKRQNTWYGKTT 148
             G L E ++ L K +G          L +++         +              G++ 
Sbjct: 62  PDGRL-EAADRLAKWLGKDRGPTF---LSELTAPDGGLEADDAAALAQEIAAAQRAGRSF 117

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP---------RALGKR 199
              + G +    + +   P            G  ++ +    +               + 
Sbjct: 118 ALAVRGVDSSRLLLVRGAP----AGPVLAESGGVVLWIFDATDSQSEIQSLKGKVEQLRE 173

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP---PPHLRMKNKVSSLTEYYAHKDDVLKT 256
             +  + L E              +    +            +V +           L  
Sbjct: 174 ALEAMAGLVEAAPFPMWHRTADMRLSLVNTAYVRAVDGESAREVIAHGTELVETVGGLTP 233

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
           +     T  + +  E+    TI+  + T +     L       F    +           
Sbjct: 234 QAAAAQTLTDGAPVERMVPATIDGERRTIRVVDVPLGAAGVAGFAMDQNELEQ-ARVEHR 292

Query: 317 EGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
             E    + +D+       +     L + N  F+ L      + +        +LD  + 
Sbjct: 293 RLEAAQRDLLDRLSAGVARFGSDRALRFWNQPFMSLFGL-DQERLSDNPPFERVLDQMRE 351

Query: 376 S---DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
           +     N   P          ++   R           L +   P              G
Sbjct: 352 ARRLPENRDFPAWRAERRDWFLSPDPREENWLLADGTHLRVYAQPLPD-----------G 400

Query: 433 IEPEDVDTRINKRKMEIEVMQL----CSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
                 + R  + ++      L     +  +   + I + + +G +   N     ++   
Sbjct: 401 GLLLIFEDRTEQVQLSSARDTLLRVRTATFDNLFESIGVFSSDGRLHLWNSRFRTIWDVS 460

Query: 489 VEDILRKPFTVFLEQNTPSVMNH-----YLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
            + + + P    L +   S +        + E++     +  +++      + ++     
Sbjct: 461 EDLLAQHPRIDELMRTVQSRLAKPQQGNLVRELVRAATVERKQRVGHVGFADGRIFEFAA 520

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
           I            TM D+++ ++ +  L       E+    K+ F+  +S+E+RTPLT I
Sbjct: 521 IPLP---DGNALFTMLDVTDSRRVEQVLRDRNDALEQADKVKTAFVTNMSYELRTPLTTI 577

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
            GF+E++     G L      EY + I +S N +  +++++LD+++ E+G + +   PV 
Sbjct: 578 AGFAEMMSAGYAGELSTS-AKEYVDGILQSTNRLSMLIDNVLDLTQGEAGMLPVEKAPVD 636

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
           L     +A++ ++  A  K I +  S   ++  I  D R + Q   ++L NA+ +   GG
Sbjct: 637 LAAEARDAVARIKGDATAKGIDLALSLQASLGTIQGDKRRIGQALDHLLENAVRYCSRGG 696

Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG-TGLGLPLAK 782
           ++++    T++    L V D G G+             +   ++     G  G+GLPLA+
Sbjct: 697 RVLLHGDGTTDN-ARLVVSDNGPGIDAKRQATIFDASSRTEQARN---GGKAGIGLPLAR 752

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFP 809
            +  A+ G   + S P +GT++ I  P
Sbjct: 753 QLAQAHGGTLQLVSEPGQGTMVVIELP 779



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 51/385 (13%), Positives = 102/385 (26%), Gaps = 33/385 (8%)

Query: 86  TWNIDAHGYLKEISEELPKTI-GNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144
            W+  A   L  ++    + + G  A ++I      V  +  + P       L       
Sbjct: 189 MWHRTADMRLSLVNTAYVRAVDGESAREVIAHGTELVETVGGLTPQAAAAQTLTDGAP-- 246

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
               + P         I +  +P+ +      G  GF +          R   +RL+   
Sbjct: 247 -VERMVPATIDGERRTIRVVDVPLGAA-----GVAGFAM--DQNELEQARVEHRRLEAAQ 298

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHL--RMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
             L +      +       +     P   L    + ++S    +    D + +  + P  
Sbjct: 299 RDLLDRLSAGVARFGSDRALRFWNQPFMSLFGLDQERLSDNPPFERVLDQMREARRLPEN 358

Query: 263 TSEESSLPEQEDFHTINLNQY--TKKQYFGTLQNNSKESFEY------LSHRNHPSLSAY 314
               +   E+ D+      +           L+  ++   +               LS+ 
Sbjct: 359 RDFPAWRAERRDWFLSPDPREENWLLADGTHLRVYAQPLPDGGLLLIFEDRTEQVQLSSA 418

Query: 315 FDEGENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
            D    +   T D       V+ S G L   N  F  +    S D +     +  L+   
Sbjct: 419 RDTLLRVRTATFDNLFESIGVFSSDGRLHLWNSRFRTIWDV-SEDLLAQHPRIDELM-RT 476

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASA--RLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
             S     +   L R            R+  + +          IP    N         
Sbjct: 477 VQSRLAKPQQGNLVRELVRAATVERKQRVGHVGFADGRIFEFAAIPLPDGNA-------L 529

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCS 456
               +  D+R  ++ +      L  
Sbjct: 530 FTMLDVTDSRRVEQVLRDRNDALEQ 554


>gi|75761496|ref|ZP_00741459.1| Two component system histidine kinase [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|74491013|gb|EAO54266.1| Two component system histidine kinase [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
          Length = 895

 Score =  287 bits (735), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 75/343 (21%), Positives = 146/343 (42%), Gaps = 36/343 (10%)

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYL---TEILSLDLRQTLEKITLGSTKEEKLLSL 541
            G  +  I+ +     L   + ++         E+ +        +    + ++ +    
Sbjct: 406 LGLTIHSIMGRMRIQTLLHESQAMTEELQVQSEELQASGRTTMQAEELRTTNEQLE---- 461

Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
                +   +   +       + +  K++L        + S +KS+FLA +SHE+RTPL 
Sbjct: 462 ----SRTEEAEQKTA------DLQITKSELEEKASELLRSSKYKSEFLANMSHELRTPLN 511

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           +I+  SE+++      L +    E A  I  SG  +L ++ND+LD+SK+E+GK+++ FE 
Sbjct: 512 SILLLSEMLRENHDNNLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDIIFEA 570

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTP 720
            ++ +  +         A +K +      ++ IP +   D + ++QI  N+LSNA  FT 
Sbjct: 571 TNISDMAANMHQNFLHIAAQKNVEFTIEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKFTE 630

Query: 721 SGGQIIISTTHTS--------------NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
            G    +S    S               + + + V+DTG+G+   + +   + F Q   +
Sbjct: 631 KGS---VSLHFDSIETTNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGA 687

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
              +  GTGLGL + K       G   + S   +G+   +  P
Sbjct: 688 TIRKYGGTGLGLSICKEFARLLGGWITLESNVGEGSTFTVYIP 730


>gi|325679716|ref|ZP_08159290.1| HDIG domain protein [Ruminococcus albus 8]
 gi|324108531|gb|EGC02773.1| HDIG domain protein [Ruminococcus albus 8]
          Length = 1203

 Score =  287 bits (735), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 86/355 (24%), Positives = 158/355 (44%), Gaps = 32/355 (9%)

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           +++  S+GI  ++ +G +   N     L+                   TP+     + + 
Sbjct: 235 VVDKLSEGIIAVDTDGRVRYFNEPAKALY--------------PQLTETPAETVEVIEQA 280

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKK 576
           +S      +         +         ++    S      + D +E  +   +L   ++
Sbjct: 281 ISEGQTIEI--------ADRIYTPCVNELEFEGDSFGSLYMLVDDTEHYKYMEQLKEQRQ 332

Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
           +A++ +  KS FLA +SHEIRTP+ A++G  E+I  +        + I YA  I  +G  
Sbjct: 333 LADRANKAKSAFLASMSHEIRTPINAVLGMDEMILRES----SERQIIGYAEDIRTAGRT 388

Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696
           +L ++ND+LD SK+E GKM L      L  A+++ +++V+  A++K +         +P 
Sbjct: 389 LLSLINDILDFSKVEQGKMELVPTQYELGSAINDLVNMVRPRADKKGLKFEVKVDPKMPH 448

Query: 697 I-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNY 751
           +   D   VKQ ALN+L+NA+ +T  G  +        + E    +   + DTG G+   
Sbjct: 449 LLYGDEIRVKQCALNLLTNAVKYTEKGS-VRFEVGFEKSGEKSIKLRFTIADTGAGIREE 507

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           ++EK   PF +I   +    EGTGLG+ +   +++    K  + ST  KG+    
Sbjct: 508 DMEKLFSPFSRIEEGKNRSIEGTGLGMSITVQLLELMGSKLDVDSTYGKGSTFSF 562


>gi|83955097|ref|ZP_00963753.1| two-component hybrid sensor and regulator [Sulfitobacter sp.
           NAS-14.1]
 gi|83840426|gb|EAP79599.1| two-component hybrid sensor and regulator [Sulfitobacter sp.
           NAS-14.1]
          Length = 1088

 Score =  287 bits (735), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 94/525 (17%), Positives = 197/525 (37%), Gaps = 38/525 (7%)

Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVD 358
                       +       +      V+   +   +  +G + + N  F+  +      
Sbjct: 363 RENARQAHARKDVLKSEVRSKQFYRNAVEAHTVFCMLNQNGAITHVNDQFVQASGRSREA 422

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
            I      ST L     + N  +    +  +  +       +  +      ++ +     
Sbjct: 423 LI------STPLVDVMDAGNRGVLTGDVLPAMMSGTPWKGTI-VLHKTDGKAVWLQCSFI 475

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI-ILST 477
              +   +      +  +   TR       +   +  + LE   D + +   +   ++  
Sbjct: 476 PITDGEKQLREIAIVASDMTKTREG-----VSEARFNNTLELLQDHVVVFQPQTYAVMYA 530

Query: 478 NRAVSKLFGYP--VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
           N +V++        +D   K  +  + +     +      ++    R+          K 
Sbjct: 531 NASVARHLMRHDESDDWRGKSLSDLIGKRDYDSLRERCAGLIKGPERRV---TWEVEAKS 587

Query: 536 EKLLSLRIIIK-KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
                + +           +     D+S+ K  +                K++FL+ VSH
Sbjct: 588 GITYDISLEYVCPAQDEPRFIAIYRDVSQRKVAE--------------KAKTEFLSTVSH 633

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           E+RTPLT+I G   ++ +   G L + +          S + ++ ++N +LD+ KIE+G 
Sbjct: 634 ELRTPLTSIKGALGLVLSGATGQLPD-KMKGLITIAASSCDRLILLINSILDMEKIETGT 692

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT--SFANNIPRILADLRSVKQIALNIL 712
           ++   + ++L E ++ A+   QLYA    + +R   +  +++     D + + Q+  N+L
Sbjct: 693 LDFRMKTLNLSETLNTALVPNQLYAERAGVSLRRVDTPDDDVMLTYGDSKRLVQVLDNLL 752

Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           SNA+ F+  GG+I+I+  H   +++ + +RD G G+         + F Q  +S      
Sbjct: 753 SNAVKFSEHGGEILIAL-HAVGDQLRISIRDFGTGIQAAAQASVFEKFTQGDSSDSRSKG 811

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP-LYDTSHP 816
           GTGLGL +AK ++D + G+   FS    GT I I  P L     P
Sbjct: 812 GTGLGLTIAKVIIDHHQGQITFFSREDVGTEIIISLPRLAQEDAP 856


>gi|255013497|ref|ZP_05285623.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_7]
          Length = 632

 Score =  287 bits (735), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 104/510 (20%), Positives = 197/510 (38%), Gaps = 32/510 (6%)

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
              +S   D  E +  +     P+   +Y   G L   N   + +   +S  D+      
Sbjct: 125 EEKISKMIDHNEMIFRKLYVNLPVGVELYDRDGYLIDLNAKDMEIFGIRSKKDVLGVNIF 184

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
           S  +    +         + +R + +        +      E  L +        +Q  E
Sbjct: 185 SNPILPKDVIKKLKENKSVNFRLNYSFKKVD-DYYNTSKVGE--LDIVTKASILYDQRGE 241

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR---EGI-ILSTNRAVS 482
                 I  ++ +  I   ++         +      G A+ +    EG  I      + 
Sbjct: 242 PSSYLLINLDNTEKMIAYNRISEFENVFTLVSVYAKVGYALYDLYTFEGYAIKQWYENMG 301

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE-KLLSL 541
           +  G P+  I+      ++  N    +N +  E+          +     + +  K +  
Sbjct: 302 EKDGTPLSQIIG--IYSYIHPNDAGYINSFFEEV-KQGKAHHFRREVRVKSGDGWKWICA 358

Query: 542 RIIIKK---LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
            I        P         +DI+E K  + K    ++ AE+    KS FLA +SHEIRT
Sbjct: 359 NITRNPQSVDPNKPEMICINYDITELKDSQLK----RERAEELDRLKSAFLANMSHEIRT 414

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
           PL AI+GFS+++              E+   ID +  ++L +++D+LD++KIESG M+  
Sbjct: 415 PLNAIVGFSQLLAETD----DPEERHEFVEIIDSNNRMLLQLISDILDLAKIESGTMDFK 470

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718
           F  +S+ E ++E ++  ++   +  + +     +   +I +D   + Q+  N L+NAI +
Sbjct: 471 FADMSIKEVINEIVTSFRIKMPD-NVALIAPKDSPECQIYSDRMRLTQVISNFLNNAIKY 529

Query: 719 TPSGGQIIISTTHTS-NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
           T  G  I     +    +E+   V DTG GM+          F +    +    +GTGLG
Sbjct: 530 TSEGCII---LAYEIIGDEIKFSVTDTGDGMSQEIQAHIFDRFYKGNTFK----QGTGLG 582

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           L + + +V+   G+  + S   KG+     
Sbjct: 583 LSICETIVNRLGGRIGVNSELGKGSTFWFT 612


>gi|153008157|ref|YP_001369372.1| histidine kinase [Ochrobactrum anthropi ATCC 49188]
 gi|151560045|gb|ABS13543.1| histidine kinase [Ochrobactrum anthropi ATCC 49188]
          Length = 858

 Score =  287 bits (735), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 134/725 (18%), Positives = 251/725 (34%), Gaps = 49/725 (6%)

Query: 109 YAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL--WPIEGTNLYVPIDLAAL 166
              +++G+   D +           G  L+ Q+    +  +     +  +  + ++    
Sbjct: 148 TRAEVVGLLPDDSAAPQDRSTFLAFGRWLRPQSVVALERAIGMLREQARSFDLTVETVNG 207

Query: 167 PIYSRNREFSGFRGFGIVH---------VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSV 217
            +       SG  GF +                           + F  L +        
Sbjct: 208 TLLDVRGRTSG--GFAVARFLSLQGVQAERAALQAQNREFSERIELFRRLLDRIDQPVWT 265

Query: 218 EKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHT 277
                 +    +           S +             ++       E  L EQ     
Sbjct: 266 RDAGGRVEWVNAAYAQAVDMADGSQVISEGRELFGAQARQRLERDRFAEPVLQEQLTAVV 325

Query: 278 INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS 337
               +         +   +             ++    +       ET+D+      ++ 
Sbjct: 326 HGDRRL---FNVTDVSAETGSVGLGFDQTEVQAVREELNRTMKSHAETLDQLSTAVAIFD 382

Query: 338 HG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA 396
               L + N +F  L    +   +E     + +LD  +       +P      D    A 
Sbjct: 383 PEMKLQFFNQAFAKLWSLDT-AWLESQPSNTLILDRLRSEGKLPEQPEWRKWKDSVLSAY 441

Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
            A         E    M  +P  +  +   N    G      +    K ++E     L  
Sbjct: 442 RAV--------EPQEHMWHLPDTRTMRVVANPHPQGGVTWFFENMTEKFELEGRYNTLIK 493

Query: 457 I----LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNH 511
           +    L+  ++ +A+   +G I  +N + + L+  P+  I+     +           N 
Sbjct: 494 VQGETLDHLAEAVAVFGSDGRIRLSNPSFADLWALPMPLIVEGTHISSIARICGERGGNG 553

Query: 512 YLTEILSL--DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN 569
              + +S       T +        ++  + L   +  LP      LT  D+++  + + 
Sbjct: 554 LWDDFVSTVTGFLDTRDGRMGQVELDDGTI-LSFAVVPLPKGQ-TMLTFIDVTDTVRVER 611

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
            L    +  E     K+DF+  VS+E+R+PLT IIGF+E+++   FG L N R IEY ++
Sbjct: 612 ALKEKNEALELADQIKNDFVQHVSYELRSPLTNIIGFTELLQTPAFGSL-NERQIEYLDH 670

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I  S +++L IVND+LD++ +++G M L    VS+ EA+S A S V     +  I +   
Sbjct: 671 ISTSSSVLLTIVNDILDLATVDAGIMELEVGEVSVVEAISAAASRVGERMRDHDIGLDID 730

Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749
            A+++    AD   V+Q+  N+LSNA ++ P G  I +        EV+  V D G GM 
Sbjct: 731 IADDVDVFKADANRVRQVLFNLLSNATNYAPEGSSIQLQVA-REGSEVVFAVHDDGPGMP 789

Query: 750 NYELEKAMKPFGQIPN-----SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
              L+   K F   PN        +          + K+ V+ + G   I +   +GT +
Sbjct: 790 GEVLDTVFKRFQSYPNGGRRRGAGLGLA-------IVKSFVELHGGSVDIDTGSGRGTTV 842

Query: 805 EIIFP 809
              FP
Sbjct: 843 ICRFP 847



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 48/386 (12%), Positives = 101/386 (26%), Gaps = 43/386 (11%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMI---GMRLCDVSDILHIDPNNHIGDLLKRQNT 142
            W  DA G ++ ++    + +       +   G  L        ++ +     +L+ Q  
Sbjct: 263 VWTRDAGGRVEWVNAAYAQAVDMADGSQVISEGRELFGAQARQRLERDRFAEPVLQEQ-- 320

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
               T +   +     V  D++A          +G  G G           R    R  K
Sbjct: 321 ---LTAVVHGDRRLFNVT-DVSAE---------TGSVGLGF--DQTEVQAVREELNRTMK 365

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
             +   +      ++   +  +         L   +      E       +L   +    
Sbjct: 366 SHAETLDQLSTAVAIFDPEMKLQFFNQAFAKLWSLDTAW--LESQPSNTLILDRLRSEGK 423

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
             E+    + +D           +++   L +          H        + +  E   
Sbjct: 424 LPEQPEWRKWKDSVLSAYRAVEPQEHMWHLPDTRTMRVVANPHPQGGVTWFFENMTEKFE 483

Query: 323 ------------PETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
                        ET+D       V+ S G +  +NPSF  L        +E     S  
Sbjct: 484 LEGRYNTLIKVQGETLDHLAEAVAVFGSDGRIRLSNPSFADLWALPMPLIVEGTHISSIA 543

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
               +   N       +            R+  ++ +    L+   +P  K         
Sbjct: 544 RICGERGGNGLWDD-FVSTVTGFLDTRDGRMGQVELDDGTILSFAVVPLPKG-------Q 595

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLC 455
                 +  DT   +R ++ +   L 
Sbjct: 596 TMLTFIDVTDTVRVERALKEKNEALE 621


>gi|90422866|ref|YP_531236.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisB18]
 gi|90104880|gb|ABD86917.1| Hpt sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisB18]
          Length = 895

 Score =  287 bits (735), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 83/391 (21%), Positives = 163/391 (41%), Gaps = 28/391 (7%)

Query: 438 VDTRINKRKMEIEVMQLCSIL----EATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
           ++    K ++E +   +  +L    +  SD +     +G ++       +    P+  + 
Sbjct: 224 MENLRAKLQLEHQTEIISLLLKDYQDNASDWLWQTAADGRLVDIPERFVEAAQLPLSQLR 283

Query: 494 RKPFTVFLE--QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
                  LE            +  ++          + + +  + ++ S+          
Sbjct: 284 GATLADVLELLCPCERATVDGIIALMQQREAVNDAVVHIMAGGQPRMWSVSAKPTFDHNG 343

Query: 552 --SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
             + Y     D++E  + +         AE E+  KS+FLA +SHEIRTP+  ++G + +
Sbjct: 344 KFAGYRGVGRDVTERWRAER--------AEAENRAKSEFLAIMSHEIRTPMNGVLGLANM 395

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           +         +P        I  SG+ +  I+ND+LD+SK+E+G+        S    V 
Sbjct: 396 LLETDL----DPEQHHAVETIRESGDNLQRILNDILDLSKLEAGRFQFETVDFSPAALVE 451

Query: 670 EAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIII- 727
              S+V+  A  K + I  +    +P+ +  D+  ++Q+ LN+ SNA+ FT  G ++ I 
Sbjct: 452 AVCSVVRSSAKAKGLEIERAIDPGLPKGLNGDMARIRQVLLNLASNAVKFTDRG-RVTIM 510

Query: 728 -STTHTSNEEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
            +    ++   ++  RV DTG+G+    + +    F Q   S   R  GTGLGL +++ +
Sbjct: 511 ANCVSQADGRAVVEWRVADTGIGIATDRVGQLFSDFAQADVSINRRFGGTGLGLAISRRI 570

Query: 785 VDANMGKFYIFSTPAKGTLIEII--FPLYDT 813
           V+   G   + S    G+        P+ D 
Sbjct: 571 VEQMGGAIDVSSEQGSGSTFRFSLNLPISDV 601



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 45/376 (11%), Positives = 100/376 (26%), Gaps = 14/376 (3%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD---ILHIDPNNHIGDLLKRQNT 142
            W   A G L +I E   +       ++ G  L DV +          + I  L++++  
Sbjct: 255 LWQTAADGRLVDIPERFVEAAQLPLSQLRGATLADVLELLCPCERATVDGIIALMQQREA 314

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
                      G      +  +A P +  N +F+G+RG G                    
Sbjct: 315 VNDAVVHIMAGGQPRMWSV--SAKPTFDHNGKFAGYRGVG--RDVTERWRAERAEAENRA 370

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
           K   L  I               +       L  +   +  T   +  +          L
Sbjct: 371 KSEFLA-IMSHEIRTPMNGVLGLANMLLETDLDPEQHHAVETIRESGDNLQRILNDILDL 429

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
           +  E+   + E            +     +++++K     +     P L    +      
Sbjct: 430 SKLEAGRFQFETVDFSPAAL--VEAVCSVVRSSAKAKGLEIERAIDPGLPKGLNGDMARI 487

Query: 323 PE-TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVD--DIEIAGGLSTLLDAPKLSDNN 379
            +  ++           G +               V+    +   G++T       SD  
Sbjct: 488 RQVLLNLASNAVKFTDRGRVTIMANCVSQADGRAVVEWRVADTGIGIATDRVGQLFSDFA 547

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ-NGIEPEDV 438
                +  R   T +  +     ++         +        +F  N+P  + +  +  
Sbjct: 548 QADVSINRRFGGTGLGLAISRRIVEQMGGAIDVSSEQGSGSTFRFSLNLPISDVVVADPR 607

Query: 439 DTRINKRKMEIEVMQL 454
             R+    + + +  L
Sbjct: 608 LDRVGADDLRLRIAML 623


>gi|330505538|ref|YP_004382407.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina NK-01]
 gi|328919824|gb|AEB60655.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina NK-01]
          Length = 962

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 102/644 (15%), Positives = 211/644 (32%), Gaps = 35/644 (5%)

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL---T 244
           R       L +R             G   +   + ++ ++  P   ++   +        
Sbjct: 90  RTYAQRLRLDERYPGIQGLGFAQMLGAQQLPAFESEVRAEGFPDFSVQPPGQRERYCVVR 149

Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
                    L    + +++         +   +         +     +N+ +     L 
Sbjct: 150 FIEPFAGRNLAAFGFDMMSEPVRRAALMDAGRS--GQSRLSGRVTLRQENHGEVQPGLLL 207

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364
           +          D  E            PF V+   +         L  +  +   I  + 
Sbjct: 208 YVPLYWPQRPLDTPEQRLAALRGFAYSPFRVHDLMHGILGERKQKLDFELYAGSIISTSE 267

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
            L +      +S     +  +        +        ++      +A+  +    +   
Sbjct: 268 LLYSSRGEASISKPANRQLQLELFGQTWHLDFHYAPGYLEREHRGEVALLILGSCISLLL 327

Query: 425 PENMPQNGIEPEDVDTRINK--RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
              +    +    V     +   ++     +L   L+ ++DG   I+     L  +    
Sbjct: 328 FCLVSSLSLRRAQVQQLATRITEQLHRSEERLALALKGSNDGWWDIDARSGSLFASAHGW 387

Query: 483 KLFGYPVEDILRKP-----FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
           ++ GYP +           +   +  +        L + L  +              +  
Sbjct: 388 QMLGYPEQGPPGATGDPTAWERLVHPDDLQAALSRLQQALQDN-ASNFTIDCRLLRADGS 446

Query: 538 LLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
            L + +       +       + T  D SE K+ +                KS+F++ VS
Sbjct: 447 ELPVLLRGYIQRDAKGKPLRITGTAMDQSEAKRIE--------------RLKSEFVSTVS 492

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HE+RTPLTAI G   +I     GP+         +    +   +  ++NDLLD+ K+E+G
Sbjct: 493 HELRTPLTAIAGSLGLINGGALGPVP-EGMRTMLSIAQANSQRLSHLINDLLDMDKLEAG 551

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713
           KM    +P  L   + +A+   Q YA+ ++I +R        R+  D   ++Q+  N +S
Sbjct: 552 KMQFDLQPCPLVAQLQDALDSNQAYADRQQIQLRL-LDCPPARVRIDAIRLQQVLANFIS 610

Query: 714 NAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
           NA+ ++P G ++ +         V + V D G G+     ++    F Q   S      G
Sbjct: 611 NAVKYSPPGAEVHLRAERRDT-RVRVEVIDQGPGIAGEFRQRIFSKFSQADASDSRSKGG 669

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP-LYDTSHP 816
           TGLGL ++K +++   G+    S   +G       P L + + P
Sbjct: 670 TGLGLAISKELIERMGGQIGFDSVEGQGACFWFELPMLSEAALP 713



 Score = 38.5 bits (88), Expect = 4.9,   Method: Composition-based stats.
 Identities = 45/386 (11%), Positives = 80/386 (20%), Gaps = 25/386 (6%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMR-----LCDVSDILHIDPN-NHIGDLLKRQ 140
           W+IDA       S    + +G       G          +     +    + +   L+  
Sbjct: 371 WDIDARSGSLFASAHGWQMLGYPEQGPPGATGDPTAWERLVHPDDLQAALSRLQQALQDN 430

Query: 141 NT-WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199
            + +     L   +G+   +P+ L          +    R  G             L   
Sbjct: 431 ASNFTIDCRLLRADGS--ELPVLLRGYIQRDAKGKP--LRITGTAMDQSEAKRIERLKSE 486

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
                SH         +             P P         +          +      
Sbjct: 487 FVSTVSHELRTPLTAIAG-SLGLINGGALGPVPEGMRTMLSIAQANSQRLSHLINDLLDM 545

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKK-QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
             L + +     Q       L       Q +   Q       +    R            
Sbjct: 546 DKLEAGKMQFDLQPCPLVAQLQDALDSNQAYADRQQIQLRLLDCPPARVRIDAIRLQQVL 605

Query: 319 ENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
            N     V   P    V+                    V+ I+   G++        S  
Sbjct: 606 ANFISNAVKYSPPGAEVHL---------RAERRDTRVRVEVIDQGPGIAGEFRQRIFSKF 656

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
           +            T +  +     I+         +         F   M      P   
Sbjct: 657 SQADASDSRSKGGTGLGLAISKELIERMGGQIGFDSVEGQGACFWFELPMLSEAALPASA 716

Query: 439 DTRINKRKMEIE---VMQLCSILEAT 461
           D R +   +E E      L  +LE  
Sbjct: 717 DGRRSLLVVEDEPDIASMLRQLLEDA 742


>gi|315127469|ref|YP_004069472.1| sensory transduction histidine kinase [Pseudoalteromonas sp.
           SM9913]
 gi|315015983|gb|ADT69321.1| sensory transduction histidine kinase [Pseudoalteromonas sp.
           SM9913]
          Length = 885

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 78/249 (31%), Positives = 138/249 (55%), Gaps = 9/249 (3%)

Query: 562 SEWKQEKNK---LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
           S  K  ++    L  A   AE+ +  KS FLA +SHEIRTPLTAI+GF+E + +      
Sbjct: 383 SRTKALESMNSKLETAIAQAEQANQLKSRFLANMSHEIRTPLTAIMGFTEQLLHSDKPTN 442

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
                  +   I R+   +L+++N++LD+SKIE+ K+ +   P+++ + + +  S+++  
Sbjct: 443 D----KHHLGTILRNSKHLLELINNILDLSKIEAEKLAVEQTPLNVVQLIHDVESIIKPL 498

Query: 679 ANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737
           A EK++    ++A  +P  I +D+  +KQI +NI SNA+ FT  G Q+ I+  + + + +
Sbjct: 499 AQEKQLSFTINYALPLPHTINSDITRLKQILINIASNAVKFTEQG-QVTITAKYQAPKTL 557

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
              + DTG+GM++ ++++   PF Q   +   R  GTGLGL ++K +     G   + S 
Sbjct: 558 TFVIEDTGIGMSSNQIKRLFTPFEQADATTTRRFGGTGLGLCISKNLAQLLGGDVSVTSE 617

Query: 798 PAKGTLIEI 806
              G+   I
Sbjct: 618 VGVGSCFTI 626


>gi|260365946|ref|ZP_05778436.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030]
 gi|308113209|gb|EFO50749.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030]
          Length = 742

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 89/342 (26%), Positives = 156/342 (45%), Gaps = 19/342 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +F   +   + +P T        +V++      L + +   +             +++ +
Sbjct: 1   MFASRLMHDVTQPITHM-----KNVVDRIRRGHLDVRIEGKMHGELDQLKNGINAMAVSL 55

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
               +           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 56  SEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTP 115

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+  +   +          +Y   I++S N +L+I+ND+LD SK+E+GK+ L  
Sbjct: 116 LNGVIGFTRQMLKTQLSN----SQTDYLQTIEKSANNLLNIINDILDFSKLEAGKLALEN 171

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P    E++ E I+L    A+EK + I       IP  ++ D   ++QI  N++ N+I F
Sbjct: 172 IPFDFRESLEEVINLQATSAHEKGLEITLKVDPKIPPGLVGDPLRIQQILTNLVGNSIKF 231

Query: 719 TPSGGQIIISTTHT----SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           T  G  I +S         + E+   VRDTG+G++  +  +  + F Q   S   R  GT
Sbjct: 232 TERG-NIDVSVEMRSQAGDSVELQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGT 290

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           GLGL + + +V    G+  + S   +G+       L  T  P
Sbjct: 291 GLGLVITQKLVSQMGGEISLTSRLHQGSTFWFTLRLNSTEMP 332


>gi|167766413|ref|ZP_02438466.1| hypothetical protein CLOSS21_00918 [Clostridium sp. SS2/1]
 gi|167711822|gb|EDS22401.1| hypothetical protein CLOSS21_00918 [Clostridium sp. SS2/1]
          Length = 804

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 76/251 (30%), Positives = 138/251 (54%), Gaps = 7/251 (2%)

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           +++  L  A+  A+  +  KS FLA + HEIRTP+  ++G +E+I  +      +    +
Sbjct: 190 KQQEILEEARIEAQSANKAKSAFLANMGHEIRTPINVMLGMNEMILRES----ESEEIRQ 245

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           YA  I+RSG  ++ ++N++LDIS+IESGKM +      L + + E + + +  A +K + 
Sbjct: 246 YAKSIERSGGYLISLINNILDISRIESGKMEIEEGKYELRQLLDEVMLIAEKQAEQKSLK 305

Query: 686 IRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-TSNEEVILRVRD 743
           +   F   +P  ++ D+  +KQI LN+++NA+ +T  G QI I  +      ++I  V+D
Sbjct: 306 MNLIFDKTLPAYLIGDVIHIKQILLNLINNAVKYTKEG-QIDIKVSKNEEETKLIFEVKD 364

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TG+G+    L      F ++ + +  + +GTGLGL +AK +V+   G  ++ S   KG+ 
Sbjct: 365 TGIGIKEENLPVLFDAFMRVDSKKNKKIKGTGLGLAIAKQLVEQMGGMIWVESVYGKGSS 424

Query: 804 IEIIFPLYDTS 814
             +  P+   S
Sbjct: 425 FFVQLPMKKVS 435


>gi|16766264|ref|NP_461879.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|161615886|ref|YP_001589851.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167550176|ref|ZP_02343933.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|167993450|ref|ZP_02574544.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|168231049|ref|ZP_02656107.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|168261898|ref|ZP_02683871.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|168463891|ref|ZP_02697808.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|168820322|ref|ZP_02832322.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|194444640|ref|YP_002042209.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194471010|ref|ZP_03076994.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|204928346|ref|ZP_03219546.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|224584749|ref|YP_002638547.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|238909738|ref|ZP_04653575.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|6996656|gb|AAF34823.1|AF171069_1 BarA sensor kinase [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|16421509|gb|AAL21838.1| sensory histidine kinase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|161365250|gb|ABX69018.1| hypothetical protein SPAB_03679 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194403303|gb|ACF63525.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194457374|gb|EDX46213.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|195633256|gb|EDX51670.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|204322668|gb|EDZ07865.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|205324815|gb|EDZ12654.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|205328470|gb|EDZ15234.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|205334634|gb|EDZ21398.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|205342849|gb|EDZ29613.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|205349206|gb|EDZ35837.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|224469276|gb|ACN47106.1| sensor protein [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|261248094|emb|CBG25929.1| sensor protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267995094|gb|ACY89979.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301159519|emb|CBW19038.1| sensor protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312913980|dbj|BAJ37954.1| hybrid two-component sensor kinase BarA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|320087383|emb|CBY97148.1| sensor-regulator, activates OmpR by phophorylation [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
 gi|321225638|gb|EFX50692.1| BarA sensory histidine kinase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|323131315|gb|ADX18745.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332989829|gb|AEF08812.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 918

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 87/333 (26%), Positives = 154/333 (46%), Gaps = 17/333 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +FG+ +   +  P    +               L   +   +             +++ +
Sbjct: 193 IFGWRLMRDVTGPIRNMVNTVDR-----IRRGQLDSRVEGFMLGELDMLKNGINSMAMSL 247

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 248 AAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTP 307

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+ +          NP   ++ N I+RS N +L I+ND+LD SK+E+GK+ L  
Sbjct: 308 LNGVIGFTRLTLKTEL----NPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILES 363

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P  L   + E ++L+   +++K + +  +  N++P  ++ D   ++Q+  N++ NAI F
Sbjct: 364 IPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKF 423

Query: 719 TPSGGQ-IIISTTHTSNEEVILRV--RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T SG   I++     SN +V + V  RDTG+G+   +  +  + F Q   S   R  GTG
Sbjct: 424 TESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTG 483

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           LGL + + +V+   G     S P +G+      
Sbjct: 484 LGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516


>gi|262161796|ref|ZP_06030814.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae INDRE 91/1]
 gi|262028528|gb|EEY47183.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae INDRE 91/1]
          Length = 1176

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 90/382 (23%), Positives = 160/382 (41%), Gaps = 24/382 (6%)

Query: 441 RINKRKMEIEVMQLC---SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP- 496
           R +++  ++   QL     +L+A    I I + +G ++ TN A  K++    E    +P 
Sbjct: 511 RSSEQVAKLSTEQLRWLTELLDAIPSMIFISDAKGEVVLTNAAYRKIYYTCCEKGCVQPQ 570

Query: 497 --FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554
              +     +        + +    +         +             I   +     Y
Sbjct: 571 PECSFLALPDQHEAEFSIIIQAPKSNCSIGEHYFHVTRRA---------ISHPINQRKYY 621

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
               +DI+E K+ +  L  + + A +    ++ FLA VSHE+RTP+ A++G  E++ ++ 
Sbjct: 622 LTLFNDITELKETEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGLMEILASR- 680

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
              L +            S   +   VND+LD SKIE+ ++ L     +L + +   +  
Sbjct: 681 ---LKSSESQLLLTNAISSAERLKLHVNDILDFSKIEAQQLQLDIGLYNLADELGPLLRG 737

Query: 675 VQLYANEKRILIRTSFANN-IPRILADLRSVKQIALNILSNAIHFTPSGGQI-IISTTHT 732
            +  A  K I     ++ N +     D     QI  N+LSNAI FT  G  +  I     
Sbjct: 738 FEASAQLKEIEFDVIWSPNSLLLANFDALRFNQIVTNLLSNAIKFTDQGRVVFKIDVAPE 797

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
               + + V DTG GMT  ++E    PF Q  ++   R  GTGLG+ +   +++   GK 
Sbjct: 798 ---MLTIVVEDTGCGMTQTQIESLFVPFAQADSTITRRFGGTGLGMSIVANLIELMNGKI 854

Query: 793 YIFSTPAKGTLIEIIFPLYDTS 814
            + S   +GT I++  PL   +
Sbjct: 855 EVKSEFEQGTQIQVNLPLVTQT 876


>gi|149377908|ref|ZP_01895636.1| Putative diguanylate cyclase (GGDEF domain) with GAF sensor domain
           [Marinobacter algicola DG893]
 gi|149357798|gb|EDM46292.1| Putative diguanylate cyclase (GGDEF domain) with GAF sensor domain
           [Marinobacter algicola DG893]
          Length = 815

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 89/516 (17%), Positives = 186/516 (36%), Gaps = 45/516 (8%)

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-----NLFYANPSFLLLTKYKSVDDI 360
               +        E+   +  +  P   + Y           Y +     +      D  
Sbjct: 320 AQWMAALLQQHSHEDTLRKLSENVPGMLYQYHEEKDGHSRFLYCSEGIRDIYGLSPKDVE 379

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
             A      +    L   +  + +   R          R   +    E    +      +
Sbjct: 380 HDASAAFDTIHPDDLG--SVEEAIHQSRKSLAVWDCQYR---VSRPGEPWKWVQGRATPE 434

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNR 479
                 ++  +G   +  +++  + +++    QL +  E +  GI + + R G  L  N 
Sbjct: 435 RRPDGSSI-WHGFIADIDESKRAQLELQEREQQLRTFFELSPIGILLTDFRSGRNLDVNA 493

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
           A+    GY     +   +      +  +     ++++         E+  +   K+   +
Sbjct: 494 ALLNFTGYSYSQFIALNYWDVTPDDFETQTQQAISDLKEHGQFGPFEQEFV--RKDGARI 551

Query: 540 SLR---IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
            +    ++I+++         + DISE ++                  K++F++ VSHE+
Sbjct: 552 PILIQGVMIERIEGKPLIWSLVEDISERRKV--------------DRMKNEFISTVSHEL 597

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTPLT+I G   +I    FG L +           R+ + +  +++DLLD+ K+ SGKM 
Sbjct: 598 RTPLTSISGSLGLIAGGVFGALPDE-VKTMVAIAARNSDQLRHLIDDLLDMEKLVSGKME 656

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716
           L  +  ++   + +++  V  YA +++I +R    +   +   D R + Q   N+LSNAI
Sbjct: 657 LRMQSENISAIIQDSLDRVSTYAVDRQISLRLENQHPWAKAFIDARRLGQALDNLLSNAI 716

Query: 717 HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ------QIR 770
            F+P   +++I T    N    + V D G G+      +  + F Q  +S          
Sbjct: 717 KFSPQEAEVVIFTHL-HNGLFRIEVTDYGTGIPEAFQPRIFEKFAQADSSDTRGRGGTGL 775

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G        + + ++    G     ST   G+   +
Sbjct: 776 GL------AITREIMSQMGGGVGFKSTEGYGSTFWL 805


>gi|309792210|ref|ZP_07686682.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides
           DG6]
 gi|308225751|gb|EFO79507.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides
           DG6]
          Length = 921

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 81/261 (31%), Positives = 134/261 (51%), Gaps = 10/261 (3%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  +  N L      AE  +  KS FLA +SHEIRTPL A+IG + +++  R     +  
Sbjct: 410 QQWEMANALRARNDAAEAATRAKSAFLANMSHEIRTPLNAVIGMAALLQESRL----DQE 465

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
              + + I   G  +L +++D+LD S+IESG++ L      L   +   + LV   A  K
Sbjct: 466 QRIFVDTIRTGGEALLAVISDILDFSRIESGQLELELAAFDLHHYLKTTVDLVAHSAYTK 525

Query: 683 RILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNE-EV 737
            + +    A ++P+I+  D   ++QI LN+L NA+ FT  G    ++ +      +  E+
Sbjct: 526 NLAMTCHIAPDVPQIVQGDAARLRQILLNLLGNAVKFTSQGEVALEVTLHDQPNPDGVEI 585

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
             +VRDTG+GM+  +LE+   PF Q  +S   R  GTGLGL +++ +V    G     S+
Sbjct: 586 TFQVRDTGIGMSAEQLERVFAPFVQADSSTARRYGGTGLGLAISQQLVHLMGGTISATSS 645

Query: 798 PAKGTLIEIIFPLYDTSHPHD 818
              G++  +  P +  +HP D
Sbjct: 646 LGHGSIFSLNLP-FTHAHPAD 665


>gi|200387412|ref|ZP_03214024.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|199604510|gb|EDZ03055.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
          Length = 918

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 87/333 (26%), Positives = 154/333 (46%), Gaps = 17/333 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +FG+ +   +  P    +               L   +   +             +++ +
Sbjct: 193 IFGWRLMRDVTGPIRNMVNTVDR-----IRRGQLDSRVEGFMLGELDMLKNGINSMAMSL 247

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 248 AAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTP 307

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+ +          NP   ++ N I+RS N +L I+ND+LD SK+E+GK+ L  
Sbjct: 308 LNGVIGFTRLTLKTEL----NPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILES 363

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P  L   + E ++L+   +++K + +  +  N++P  ++ D   ++Q+  N++ NAI F
Sbjct: 364 IPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKF 423

Query: 719 TPSGGQ-IIISTTHTSNEEVILRV--RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T SG   I++     SN +V + V  RDTG+G+   +  +  + F Q   S   R  GTG
Sbjct: 424 TESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTG 483

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           LGL + + +V+   G     S P +G+      
Sbjct: 484 LGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516


>gi|197264060|ref|ZP_03164134.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|197242315|gb|EDY24935.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
          Length = 918

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 87/333 (26%), Positives = 154/333 (46%), Gaps = 17/333 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +FG+ +   +  P    +               L   +   +             +++ +
Sbjct: 193 IFGWRLMRDVTGPIRNMVNTVDR-----IRRGQLDSRVEGFMLGELDMLKNGINSMAMSL 247

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 248 AAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTP 307

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+ +          NP   ++ N I+RS N +L I+ND+LD SK+E+GK+ L  
Sbjct: 308 LNGVIGFTRLTLKTEL----NPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILES 363

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P  L   + E ++L+   +++K + +  +  N++P  ++ D   ++Q+  N++ NAI F
Sbjct: 364 IPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKF 423

Query: 719 TPSGGQ-IIISTTHTSNEEVILRV--RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T SG   I++     SN +V + V  RDTG+G+   +  +  + F Q   S   R  GTG
Sbjct: 424 TESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTG 483

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           LGL + + +V+   G     S P +G+      
Sbjct: 484 LGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516


>gi|121996907|ref|YP_001001694.1| PAS/PAC sensor signal transduction histidine kinase [Halorhodospira
           halophila SL1]
 gi|121588312|gb|ABM60892.1| PAS/PAC sensor signal transduction histidine kinase [Halorhodospira
           halophila SL1]
          Length = 446

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 75/411 (18%), Positives = 152/411 (36%), Gaps = 28/411 (6%)

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
           W  E  L +        ++       + +       R  + ++   + +     +A  D 
Sbjct: 50  WRLERWLRVGRKLDPPISRGVWGEVFHALHRRQRRQRERRHRLRRVIREYRDSAKAMPDA 109

Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
             ++  +  +L  N A   L G        +  +  L          +L          T
Sbjct: 110 TLVLYADDRVLWWNNAARHLLGLTWPGDEGQRISNLLR---QPEFKEFLDTATEHTAPLT 166

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
           +              +L + +     +    L   DIS  ++ +                
Sbjct: 167 MPSPVSPRR------TLELRLVPYGRNQR-LLIARDISRTQRLET--------------I 205

Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
           + DF+A VSHE++TPLT I G +E +  +       P +      +      +  +V DL
Sbjct: 206 RRDFVANVSHELKTPLTVIYGVAEEMGEEL--APEQPAWAGSIRLLQDQSARMQRLVQDL 263

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704
           L +S++E+G + +  +PV +   + E  +  Q  + E +  I       +  +      +
Sbjct: 264 LTLSRLETGSLAVEEDPVDMKVLLEEVCAEAQTLSGEHQHRIELDAEPGV-FVRGSYGEL 322

Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764
           +    N++SNA+ +TP+GG I +             V D+G+G+    + +  + F ++ 
Sbjct: 323 RSAVSNLVSNAVRYTPAGGTIRVRWR-ADAHSARCGVADSGIGIPREHIPRITERFYRVD 381

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
             +     GTGLGL + K ++  + G   + S P +G+   ++FP     H
Sbjct: 382 KGRSNATGGTGLGLAIVKHVMHRHGGWLNVDSEPDQGSTFTLVFPARILEH 432


>gi|46202628|ref|ZP_00052899.2| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 555

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 86/578 (14%), Positives = 190/578 (32%), Gaps = 51/578 (8%)

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP-SLS 312
           L+    PL  + E      E        + ++    G L        + L+  +      
Sbjct: 2   LRGTLAPLRRATERIQAMVEGRVPQQALEVSRGDEVGRLITAFNALQDKLAVADDALRER 61

Query: 313 AYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                      + V+    P      G +  AN +  +   +     + +      +LD 
Sbjct: 62  EALYHALFSGCKAVEMLIDP---ADGGRIIDANRAAEIYYGWTHDQLVSMRISQINILDQ 118

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
                  A +       +R       RL + +                  Q         
Sbjct: 119 S----AIAEEMHKAKAEERDHFDFRHRLASGEIRDVEVW-------SGPVQVTGRKLLYS 167

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
           I  +    R  + ++   +    +IL+     I     +G I   N    +  GY  +++
Sbjct: 168 IVHDVTARRRAEHELGSLLAFRRAILDGAGSSIIATTIDGTIRLLNPTAEQWLGYGADEV 227

Query: 493 LRKPFTVFLEQNTPSVMNHY-----LTEILSLDLRQTLEK----------ITLGSTKEEK 537
           + +                      L   +       + +                K+  
Sbjct: 228 VGRTTPALFHDPDEVAARAAQLSRELGREVEPGFECFVARTLLGGQPDSGEWTYVRKDGG 287

Query: 538 LLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
              + + I  L         +    HDIS     + +L       ++ ++   +F    S
Sbjct: 288 RFRVLLTISALYDDDGQLSGFLGVAHDISARLSMEREL-------QRSNAELENFAYVAS 340

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           H++R PL  +  +   +  +R G   +    E+  Y       +  ++ DLL  S+I  G
Sbjct: 341 HDLRQPLRMVSSYL-TLLQRRLGESLDQDCREFIAYAVDGAQRMDHMITDLLGYSRIGRG 399

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713
                 E V L + +  A + +     E    I  S    +P ++ +   ++++  N++S
Sbjct: 400 GAP--QEKVDLGDVMKLAQANLGALIEENGADITVS--EGLPVVMGNEVELERLFQNLIS 455

Query: 714 NAIHFTPSGG--QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           NA+ F   G   Q+ ++ + +++E + + VRD G+G+      +  + F ++        
Sbjct: 456 NAVKFQVKGRSPQVDVTWSSSTDEWI-ISVRDNGIGIDEAGQARLFQIFQRLVGQD--EY 512

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            G+G+GL   + + + + G+ ++ S P +G++  +  P
Sbjct: 513 PGSGIGLASCRKIAEHHGGRIWVESVPGEGSVFHVALP 550



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/167 (12%), Positives = 50/167 (29%), Gaps = 25/167 (14%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH------------------I 133
            G ++ ++    + +G  A +++G     +                             +
Sbjct: 206 DGTIRLLNPTAEQWLGYGADEVVGRTTPALFHDPDEVAARAAQLSRELGREVEPGFECFV 265

Query: 134 GDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193
              L       G+ T    +G    V + ++AL  Y  + + SGF G          +  
Sbjct: 266 ARTLLGGQPDSGEWTYVRKDGGRFRVLLTISAL--YDDDGQLSGFLGVA-----HDISAR 318

Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV 240
            ++ + L +  + L       S   ++   + S        R+   +
Sbjct: 319 LSMERELQRSNAELENFAYVASHDLRQPLRMVSSYLTLLQRRLGESL 365



 Score = 42.3 bits (98), Expect = 0.31,   Method: Composition-based stats.
 Identities = 23/294 (7%), Positives = 73/294 (24%), Gaps = 25/294 (8%)

Query: 89  IDAH--GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK 146
           ID    G + + +       G    +++ MR+  ++    +D +    ++ K +      
Sbjct: 79  IDPADGGRIIDANRAAEIYYGWTHDQLVSMRISQINI---LDQSAIAEEMHKAKAEERDH 135

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                   +     +++ + P+    R+   +     V   R             +    
Sbjct: 136 FDFRHRLASGEIRDVEVWSGPVQVTGRKLL-YSIVHDVTARRRAEHELGSLLAFRRAILD 194

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
                   ++++     +               V   T    H  D +      L     
Sbjct: 195 GAGSSIIATTIDGTIRLLNPTAEQWLGYGADEVVGRTTPALFHDPDEVAARAAQLSRELG 254

Query: 267 S------------------SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
                                  +  +   +  ++        L ++  +   +L   + 
Sbjct: 255 REVEPGFECFVARTLLGGQPDSGEWTYVRKDGGRFRVLLTISALYDDDGQLSGFLGVAHD 314

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEI 362
            S     +     +   ++        +          S+L L + +  + ++ 
Sbjct: 315 ISARLSMERELQRSNAELENFAY-VASHDLRQPLRMVSSYLTLLQRRLGESLDQ 367


>gi|150008613|ref|YP_001303356.1| putative two-component regulator sensor kinase [Parabacteroides
           distasonis ATCC 8503]
 gi|149937037|gb|ABR43734.1| putative two-component regulator sensor kinase [Parabacteroides
           distasonis ATCC 8503]
          Length = 768

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 86/391 (21%), Positives = 159/391 (40%), Gaps = 33/391 (8%)

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEAT-------SDGIAIINREGIILSTNRAVSKLFG 486
             E    +  +  +  E   L   LE+        S+G+   + +           K   
Sbjct: 389 RREASHKKQAQESLRKEKEFLSLALESGDIFAFRYSNGVFEFDHD---------FYKSLD 439

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
            P++ I    F   +          +   +L              +   +  +       
Sbjct: 440 MPIKPITSTQFQESIHPEDREDFIQH-KHLLDTGFPSRKITRRRYNFNGKGHIWWEFRYA 498

Query: 547 KLPFSS-------CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
           +              +    +I + K+ +  L  A+  AE+    KS FLA +SHEIRTP
Sbjct: 499 QAKNGQDSTRNNVGVNGLCLNIQQSKEVEEDLIKARIRAEEADQMKSAFLANMSHEIRTP 558

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L AI+GFSE++ +     +      E+   I ++ +L+L ++ND+LD+S+I+SGKM+   
Sbjct: 559 LNAIVGFSELLTSDM--EISPNERDEFMQVISKNSDLLLKLINDILDLSRIKSGKMSFTL 616

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719
               L+E +S      QL   +  + ++         I ADL  + Q+  N+++NA  FT
Sbjct: 617 TNCDLNELLSHIYRTHQLLMPQ-GVALKIQLPVLPAIIQADLHRLTQVITNLINNAAKFT 675

Query: 720 PSGGQIIISTTHT-SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
             G  I+I   +T     + + V DTG G+   +  +  + F ++        +GTGLGL
Sbjct: 676 TQG-YILIKYDYTQDKRWIQISVTDTGKGIPADKQAQVFERFNKLD----EFAQGTGLGL 730

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            + + +++   G   + S   +G+   +  P
Sbjct: 731 AICQIIIEHFGGYITLESKEGEGSTFIVTLP 761


>gi|238920097|ref|YP_002933612.1| sensory histidine kinase AtoS [Edwardsiella ictaluri 93-146]
 gi|238869666|gb|ACR69377.1| signal transduction histidine-protein kinase AtoS [Edwardsiella
           ictaluri 93-146]
          Length = 590

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 95/466 (20%), Positives = 200/466 (42%), Gaps = 30/466 (6%)

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
           ++      + L    +         +M   +     +    +   +    +   +T    
Sbjct: 149 EVLGYIWANELTQDIRRQARQMDLRIMAVLTAGLLCSLLLIVLFSRRFSAHIDIITEGLS 208

Query: 419 EKANQFPENMPQNGIEPEDVDTRINK--RKMEIEVMQLCSILEATSDGIAIINREGIILS 476
              ++ PE +P+   E   +   +N   + +         I+E  +DG+  I+R G + +
Sbjct: 209 ALVHKTPEPLPELPGELGQISRSVNALAQTLRETKTLNDLIIENAADGVIAIDRLGNLTT 268

Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
            N A   + GY  ++++ +P+      +        + + L+      L +      +  
Sbjct: 269 INPAAEAITGYTRDELVGQPYAALFSGSH---FASPVLDTLAHGTEH-LAQEVSFPAR-H 323

Query: 537 KLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
           + + L +   ++           +   D++  K+ + +L+  +++A        + +A V
Sbjct: 324 RTIELSVTTSRIHNPHGELMGALVIFSDLTARKEAQRRLAQTERLAT-----LGELMAGV 378

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           +HE+R PLTAI G+ ++I+ Q   P     + EY + + +  + +  ++  LLD S+   
Sbjct: 379 AHEVRNPLTAIRGYVQIIRQQTALPA----HQEYLSVVLKEIDSINKVIQQLLDFSRPRQ 434

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712
            +    ++ VSL+  + EA+ LVQ    + RI    +  + +P I+AD   +KQ+ LNIL
Sbjct: 435 SQ----WQRVSLNVLIEEALILVQTSGVQARITFHCALDSTLPAIVADRELLKQVLLNIL 490

Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
            NA+    + G+I I T   +  +  + + D+G G+     +K   PF     +      
Sbjct: 491 INAVQAISARGEIRIRTWQPTPAQQAVTITDSGCGIDIALQKKIFDPFFTTKAA------ 544

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
           GTGLGL L++ +++A+ G   + STP  GT   ++ P +    P +
Sbjct: 545 GTGLGLALSQRIINAHRGDIDVASTPGGGTAFTLMLPTHPPESPPE 590



 Score = 43.5 bits (101), Expect = 0.16,   Method: Composition-based stats.
 Identities = 22/274 (8%), Positives = 68/274 (24%), Gaps = 21/274 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G L  I+       G    +++G     +    H    + + D L        +  
Sbjct: 260 IDRLGNLTTINPAAEAITGYTRDELVGQPYAALFSGSHF--ASPVLDTLAHGTEHLAQEV 317

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
            +P     + + +  +   I++ + E  G     I        + +    + ++  +   
Sbjct: 318 SFPARHRTIELSVTTS--RIHNPHGELMGA--LVIFSDLTARKEAQRRLAQTERLATL-- 371

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
                    E         ++P   +R   ++           + L      + +  +  
Sbjct: 372 --------GELMAGVAHEVRNPLTAIRGYVQIIRQQTALPAHQEYLSVVLKEIDSINKVI 423

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT---PET 325
               +           ++     L   +    +    +   +     D          E 
Sbjct: 424 QQLLDFSR--PRQSQWQRVSLNVLIEEALILVQTSGVQARITFHCALDSTLPAIVADREL 481

Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDD 359
           + +  +   + +   +       +   +      
Sbjct: 482 LKQVLLNILINAVQAISARGEIRIRTWQPTPAQQ 515


>gi|161522571|ref|YP_001585500.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia multivorans
           ATCC 17616]
 gi|189348557|ref|YP_001941753.1| signal transduction histidine kinase [Burkholderia multivorans ATCC
           17616]
 gi|160346124|gb|ABX19208.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia multivorans
           ATCC 17616]
 gi|189338695|dbj|BAG47763.1| signal transduction histidine kinase [Burkholderia multivorans ATCC
           17616]
          Length = 760

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 98/564 (17%), Positives = 192/564 (34%), Gaps = 28/564 (4%)

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
           E  LPE   F    L               +       +        A      +     
Sbjct: 23  EQLLPEVVAFAGDALRSGGSAIVIVRADRLADVVERLGALVAAIGEPARRRVFVSDAEAL 82

Query: 326 VDKCPIPFFVYSH------GNLFYANPSFLLLTKY--KSVDDIEIAGGLST-LLDAPKLS 376
           + +                G +  A  +         + V  +   G     L      +
Sbjct: 83  LARFMDGDMPDRDRFLRSVGAIVEAAIAAGRPVHAFGEMVAVLCARGQPDAALRLEALWN 142

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           +        LY          A   T+  +               N   E      +  +
Sbjct: 143 ELIERHRFSLYCGYPHDAFPGAEQSTLFRHVCALHRRVLPAASLRNDERELHLTLALSQQ 202

Query: 437 DVDTRINKRKMEIEVMQLCS-ILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILR 494
                  + +   +  +  + +L      IA++   E  I+  N   S + G    DI+ 
Sbjct: 203 RSRALGAEIRRREDAERQRNGVLMHAPLPIALLAGPEHRIVLANHRFSAMCG--RTDIVG 260

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE-KLLSLRIIIKKLPFSSC 553
           +P    +       +   L +  +  +  T+ +    +T E  ++  L    +       
Sbjct: 261 RPLASVMPGADSPAVTRALDDARAHGVSTTIGEHRDRATPEGARVYRLHFNPQPQADGIG 320

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEK-------ESSHKSDFLARVSHEIRTPLTAIIGF 606
             ++  +++E    + KL  A    ++        +  K  FLA + HE+R PLT I   
Sbjct: 321 VIVSAVEVTEHVAAREKLQAANAERDRLLAELRDANHAKDQFLAVLGHELRNPLTPISLA 380

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
            E+++++      N         I R  + ++ +++DLLD+S+I  GK+ L  E V + +
Sbjct: 381 LELVRSREGHATPNE-----IAIIQRQLDHMVRLIDDLLDVSRITRGKIELKKEAVRIGD 435

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726
            V  A+ +      ++R  +      ++ R   D   + Q+  N+L+NA  +T  GG I 
Sbjct: 436 IVDRAVEVASPLLEQRRHRLHVDIDADV-RCHGDPVRLSQVVANLLTNAAKYTAPGGDIG 494

Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
           +    +  + +++ VRD+G G+    L+   +PF ++         G G+GL L K+ V 
Sbjct: 495 LHVARSDGDTIVIEVRDSGAGIPPDRLDSIFEPFFRLGGEPGRMDGGLGIGLALVKSFVM 554

Query: 787 ANMGKFYIFST-PAKGTLIEIIFP 809
            + G     S  P  G+   +  P
Sbjct: 555 LHGGTVRADSAGPGLGSTFTVTLP 578



 Score = 46.6 bits (109), Expect = 0.018,   Method: Composition-based stats.
 Identities = 30/349 (8%), Positives = 75/349 (21%), Gaps = 26/349 (7%)

Query: 130 NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRV 189
            + +  LL     + G        G+ + +        +  R        G        V
Sbjct: 19  YDSVEQLLPEVVAFAGDAL--RSGGSAIVIVRADRLADVVERLGALVAAIGEPARRRVFV 76

Query: 190 DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK----NKVSSLTE 245
            +    L + +D          +   ++ +              +        +  +   
Sbjct: 77  SDAEALLARFMDGDMPDRDRFLRSVGAIVEAAIAAGRPVHAFGEMVAVLCARGQPDAALR 136

Query: 246 YYAHKDDVLKTEKYPL-LTSEESSLPEQE---DFHTINLNQYTKKQYFGTLQNNSKESFE 301
             A  +++++  ++ L       + P  E    F  +               +  +    
Sbjct: 137 LEALWNELIERHRFSLYCGYPHDAFPGAEQSTLFRHVCALHRRVLPAASLRNDERELHLT 196

Query: 302 YLSHRNHPSL-----SAYFDEGENLTPETVDK-CPIPFFVYSHGNLFYANPSFLLLTKYK 355
               +              D         +    PI         +  AN  F  +    
Sbjct: 197 LALSQQRSRALGAEIRRREDAERQRNGVLMHAPLPIALLAGPEHRIVLANHRFSAMCGRT 256

Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
                    G       P        + +   R+                       + F
Sbjct: 257 D------IVGRPLASVMPGADSPAVTRALDDARAHGVSTTIGEHRDRATPEGARVYRLHF 310

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
            P  +A+     +       E  +    + K++    +   +L    D 
Sbjct: 311 NPQPQADG----IGVIVSAVEVTEHVAAREKLQAANAERDRLLAELRDA 355



 Score = 39.6 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 23/257 (8%), Positives = 65/257 (25%), Gaps = 17/257 (6%)

Query: 82  TVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL---- 137
            +           +   +       G     ++G  L  V        +  +   L    
Sbjct: 229 PLPIALLAGPEHRIVLANHRFSAMCGRT--DIVGRPLASVMPGAD---SPAVTRALDDAR 283

Query: 138 -KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRAL 196
               +T  G+              +     P                V V         L
Sbjct: 284 AHGVSTTIGEHRDRATPEGARVYRLHFNPQPQADGIGVIVSA-----VEVTEHVAAREKL 338

Query: 197 GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ-QSPPPHLRMKNKVSSLTEYYAHKDDVLK 255
                ++   L E++  + + ++    +  + ++P   + +  ++    E +A  +++  
Sbjct: 339 QAANAERDRLLAELRDANHAKDQFLAVLGHELRNPLTPISLALELVRSREGHATPNEIAI 398

Query: 256 TEKYPL-LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
            ++    +      L +        +    +    G + + + E    L  +    L   
Sbjct: 399 IQRQLDHMVRLIDDLLDVSRITRGKIELKKEAVRIGDIVDRAVEVASPLLEQRRHRLHVD 458

Query: 315 FDEGENLTPETVDKCPI 331
            D       + V    +
Sbjct: 459 IDADVRCHGDPVRLSQV 475


>gi|16125012|ref|NP_419576.1| sensory box histidine kinase FixL [Caulobacter crescentus CB15]
 gi|221233733|ref|YP_002516169.1| oxygen sensory histidine kinase FixL [Caulobacter crescentus
           NA1000]
 gi|13421994|gb|AAK22744.1| sensory box histidine kinase FixL [Caulobacter crescentus CB15]
 gi|220962905|gb|ACL94261.1| oxygen sensory histidine kinase FixL [Caulobacter crescentus
           NA1000]
          Length = 504

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 68/373 (18%), Positives = 160/373 (42%), Gaps = 21/373 (5%)

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
             L SIL+   D + +I+R GI+ S + A  ++FG+   + + K  ++ + +   S  + 
Sbjct: 132 DHLRSILDTVPDAVVVIDRAGIMTSFSPAAQRMFGWSEAEAIGKNVSLLMPEPYQSAHDG 191

Query: 512 YLTEILSLDLRQTL--EKITLGSTKEEKLLSLRIIIKKLPF-SSCYSLTMHDISEWKQEK 568
           YL        ++ +   ++ +G  K+     + + + +    +  ++  + D++E ++ +
Sbjct: 192 YLDRYARTGEKRIIGAGRVVVGRRKDGSTFPMELAVGETRGPTPSFTGFIRDLTERQETE 251

Query: 569 NKLSHAKKIAEKESS--HKSDFLARVSHEIRTPLTAIIGFS--EVIKNQRFGPLGNPRYI 624
            +L   +      S      +  + ++HE+  PL+AI            R       +  
Sbjct: 252 TRLQELQNELVHVSRLTAMGEMASTLAHELNQPLSAIANLLTGSRRLMDRGREADQAKVR 311

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           +  +          ++++ + D ++  + +  +     SL + + EA +L  +   E+++
Sbjct: 312 DAIDRAAAQALRAGEVIHRMRDFARRGASEREVE----SLSKLIEEASALALIGEKERQV 367

Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFT----PSGGQIIISTTHTSNEEVILR 740
            +R         + AD   ++Q+ LN++ N I       P    ++I T  T      + 
Sbjct: 368 DVRLKLDPKADDVFADRVQIQQVLLNLIRNGIDAMQAQEPRKRALLIRTGLTEEGWSEVS 427

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V DTG G+    LE+  +PF           +G G+GL +++++++A+ G+ +  + P  
Sbjct: 428 VADTGPGIAPEVLERLFQPFMTTKP------QGMGVGLSISRSIIEAHGGRIWAEANPGG 481

Query: 801 GTLIEIIFPLYDT 813
           G L     P  ++
Sbjct: 482 GALFRFTLPPAES 494



 Score = 55.4 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/253 (12%), Positives = 71/253 (28%), Gaps = 17/253 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN----NHIGDLLKRQNTWY 144
           ID  G +   S    +  G    + IG  +  +    +   +    +      +++    
Sbjct: 148 IDRAGIMTSFSPAAQRMFGWSEAEAIGKNVSLLMPEPYQSAHDGYLDRYARTGEKRIIGA 207

Query: 145 GKTTL-WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
           G+  +    +G+    P++LA          F+GF         R   + +    RL + 
Sbjct: 208 GRVVVGRRKDGSTF--PMELAVGETRGPTPSFTGF--------IRDLTERQETETRLQEL 257

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
            + L  + +  +  E           P   +      S        + D  K        
Sbjct: 258 QNELVHVSRLTAMGEMASTLAHELNQPLSAIANLLTGSRRLMDRGREADQAKVRDAIDRA 317

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
           + ++    +      +  +    +    +++ SK   E  +           D    L P
Sbjct: 318 AAQALRAGEVIHRMRDFARRGASER--EVESLSKLIEEASALALIGEKERQVDVRLKLDP 375

Query: 324 ETVDKCPIPFFVY 336
           +  D       + 
Sbjct: 376 KADDVFADRVQIQ 388



 Score = 48.9 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/219 (10%), Positives = 63/219 (28%), Gaps = 20/219 (9%)

Query: 320 NLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
           +     +D  P     +   G +   +P+   +  +   + I       +LL        
Sbjct: 132 DHLRSILDTVPDAVVVIDRAGIMTSFSPAAQRMFGWSEAEAIGKNV---SLLMPEPYQSA 188

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
           +        R+    I  + R+   +    ++  M     E     P      G   +  
Sbjct: 189 HDGYLDRYARTGEKRIIGAGRVVVGRRKDGSTFPMELAVGETRGPTP---SFTGFIRDLT 245

Query: 439 DTRINKRKMEIEVMQLCSI--LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
           + +  + +++    +L  +  L A  +  + +  E      N+ +S +          + 
Sbjct: 246 ERQETETRLQELQNELVHVSRLTAMGEMASTLAHE-----LNQPLSAIANLLTGS---RR 297

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
                 +   + +   +    +  LR       +   ++
Sbjct: 298 LMDRGREADQAKVRDAIDRAAAQALRAG---EVIHRMRD 333


>gi|229154672|ref|ZP_04282787.1| hypothetical protein bcere0010_8670 [Bacillus cereus ATCC 4342]
 gi|228628620|gb|EEK85332.1| hypothetical protein bcere0010_8670 [Bacillus cereus ATCC 4342]
          Length = 883

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 79/338 (23%), Positives = 148/338 (43%), Gaps = 18/338 (5%)

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            +D++++            +    +  +L      T E        + +   L++  ++L
Sbjct: 382 HQDLIQQTVDNLGLTIHSIMGRMRIQTLLHESQAMTEELQVQSEELQTQAEELQMQAEEL 441

Query: 549 PFSSCYSLTMHDISEWKQEKN-----KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
             ++    +  + +E K         +L        + S +KS+FLA +SHE+RTPL +I
Sbjct: 442 RTTNEQLESRTEEAEQKTADLQVTKLELEEKASELLRSSKYKSEFLANMSHELRTPLNSI 501

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +  SE++K      L +    E A  I  SG  +L ++ND+LD+SK+E+GK+++ FE  +
Sbjct: 502 LLLSEMLKENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIFEATN 560

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSG 722
           + +  +         A +K +      ++ IP +   D + ++QI  N+LSNA  FT  G
Sbjct: 561 ISDMAASMHQNFLHIAAQKNVEFTVEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKG 620

Query: 723 GQ------IIISTTHTS-----NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
                   I  S           + + + V+DTG+G+   + +   + F Q   +   + 
Sbjct: 621 SVSLHFDSIETSNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGATIRKY 680

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            GTGLGL + K       G   + S   +G+   +  P
Sbjct: 681 GGTGLGLSICKEFARLLGGWITLESHIGEGSTFTVYIP 718


>gi|171058148|ref|YP_001790497.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
 gi|170775593|gb|ACB33732.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
          Length = 1135

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 147/857 (17%), Positives = 261/857 (30%), Gaps = 104/857 (12%)

Query: 25  LSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTV- 83
           L  + ID G  T +S        +       DQ  E  S           + +P  R + 
Sbjct: 47  LRGQAIDAGRRTTESFARIIEEQTTRTLQAADQRLELASVGIAQLGATGTLDEPSARVLL 106

Query: 84  ----------RFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI 133
                     R  W +DA G +   S+     IGN     IG+ L D +           
Sbjct: 107 REQIRHLPFLRAMWVMDASGRIVYDSD-----IGN-----IGVNLGDRAYF--------- 147

Query: 134 GDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIV--------H 185
              + RQ          P+   +    +   + P Y+R   F G     +         H
Sbjct: 148 --QIYRQQPQTTFYVGTPVRSRSTGSWLISVSRPRYTRGGVFDGIVVAALEPSYFDRLWH 205

Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE 245
              V         R D                      +   Q          K S+   
Sbjct: 206 SVDVGAGGSTALLRSDGTLMMRSPFDSSMMGKTVSDLLVIEPQRAGQRAGRFQKRSAFDG 265

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
                   + + +   +     S+              T     G+L      ++   + 
Sbjct: 266 IERDFAYRVLSTQPEFVVVVGRSVSRTLLPWRDMALLVTAIWAVGSLALAILCAYLARAW 325

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSVDDIEIAG 364
           R          +         D   I  + +       +A P+F  +             
Sbjct: 326 RRVADEDVRAQQLAQRLTIATDVASIGVWDWDLAANRWFATPTFFSMLGDPPDTPPVHDE 385

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
                +         AI    +           ARL     +               +  
Sbjct: 386 RWIERVHPDDRPRVAAITTAAIAGVADAPYDYEARLR--HADGSYRWFQVLGRVIARDPS 443

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA-IINREGIILSTNRAVSK 483
            + +   GI+ +    R+   +++     L  +L ATS  +    + +  +    RAV +
Sbjct: 444 GQALRLMGIQVDVTGRRLAAEELQRLNRTLR-VLSATSLALVKTHDEQAYLAEVCRAVVE 502

Query: 484 LFGY------PVEDILRKPFTVFLEQNT-------------------------------- 505
             GY        ED L K      +                                   
Sbjct: 503 AGGYLMTWIGYAEDDLDKSVRCVSQAGDSHGYLQRIRISWDGRLAIGQGPTGTAIRTGVT 562

Query: 506 --------PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT 557
                      M  +    L    + ++        +    L+L   ++   FS+     
Sbjct: 563 QVNQDILTHPKMLPWREAALESGYQSSIALPLGNEQRTFGALTLY-AVQPDAFSAQEVGL 621

Query: 558 MHDISEWKQEKNKLSHAKKIAEKE---SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
           + +++       +   A+   +     +  KS FLA +SHEIRTP+ AIIG + +++   
Sbjct: 622 LEELARNVAFGIESFRARTQRDAAEGANRAKSAFLANMSHEIRTPMNAIIGLNYLVRRSG 681

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
             P    R       +D +   +L I+ND+LD+SKIE+G++ L      L + +    S+
Sbjct: 682 VTPEQAAR----LEKVDSACQHLLSIINDILDLSKIEAGRVQLECTHFRLGDIIDNVQSI 737

Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
           +   A +K + I  S       +  D   ++Q  LN  SNA+ FT  G  I +      +
Sbjct: 738 IAEPARDKGLAIDVSGDAQALWLRGDPTRLRQALLNYASNAVKFTDKGS-ISLRAELLQD 796

Query: 735 EE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
                 +   V+DTG+G+   ++ +  + F Q   S   +  GTGLGL + + +V    G
Sbjct: 797 GGDELLLGFSVKDTGIGIEPEQIGRLFQAFEQADVSTTRKYGGTGLGLAITQRLVRLMGG 856

Query: 791 KFYIFSTPAKGTLIEII 807
           +  + STP +G+     
Sbjct: 857 EVGVDSTPGQGSHFWFT 873


>gi|168236004|ref|ZP_02661062.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|194737545|ref|YP_002115910.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|194713047|gb|ACF92268.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|197290872|gb|EDY30226.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|322614233|gb|EFY11165.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322620953|gb|EFY17811.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322624016|gb|EFY20850.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322628245|gb|EFY25034.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322633364|gb|EFY30106.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322636059|gb|EFY32767.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322639395|gb|EFY36083.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322643743|gb|EFY40294.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322648855|gb|EFY45302.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322655152|gb|EFY51462.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322658017|gb|EFY54285.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322664118|gb|EFY60317.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322667087|gb|EFY63259.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673135|gb|EFY69242.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322677874|gb|EFY73937.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322681048|gb|EFY77081.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322685645|gb|EFY81639.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323194784|gb|EFZ79971.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323196535|gb|EFZ81683.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323205052|gb|EFZ90035.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323207747|gb|EFZ92693.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323212701|gb|EFZ97518.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323214816|gb|EFZ99564.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323222545|gb|EGA06910.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323226425|gb|EGA10633.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323230696|gb|EGA14814.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323234953|gb|EGA19039.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323238992|gb|EGA23042.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323244650|gb|EGA28656.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323247266|gb|EGA31232.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323251798|gb|EGA35663.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323257485|gb|EGA41175.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323263270|gb|EGA46807.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323267522|gb|EGA51006.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323272711|gb|EGA56117.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 918

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 87/333 (26%), Positives = 154/333 (46%), Gaps = 17/333 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +FG+ +   +  P    +               L   +   +             +++ +
Sbjct: 193 IFGWRLMRDVTGPIRNMVNTVDR-----IRRGQLDSRVEGFMLGELDMLKNGINSMAMSL 247

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 248 AAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTP 307

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+ +          NP   ++ N I+RS N +L I+ND+LD SK+E+GK+ L  
Sbjct: 308 LNGVIGFTRLTLKTEL----NPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILES 363

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P  L   + E ++L+   +++K + +  +  N++P  ++ D   ++Q+  N++ NAI F
Sbjct: 364 IPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKF 423

Query: 719 TPSGGQ-IIISTTHTSNEEVILRV--RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T SG   I++     SN +V + V  RDTG+G+   +  +  + F Q   S   R  GTG
Sbjct: 424 TESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTG 483

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           LGL + + +V+   G     S P +G+      
Sbjct: 484 LGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516


>gi|217958585|ref|YP_002337133.1| sensor histidine kinase/response regulator [Bacillus cereus AH187]
 gi|217065019|gb|ACJ79269.1| sensor histidine kinase/response regulator [Bacillus cereus AH187]
          Length = 896

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 78/338 (23%), Positives = 147/338 (43%), Gaps = 18/338 (5%)

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            +D++ +            +    +  +L      T E        + +   L++  ++L
Sbjct: 395 HQDLIHQTVDNLGLTIHSIMGRMRIQTLLHESQAMTEELQVQSEELQTQAEELQMQAEEL 454

Query: 549 PFSSCYSLTMHDISEWKQEKN-----KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
             ++    +  + +E K         +L        + S +KS+FLA +SHE+RTPL +I
Sbjct: 455 RTTNEQLESRTEEAEQKTADLQVTKLELEEKASELLRSSKYKSEFLANMSHELRTPLNSI 514

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +  SE++K      L +    E A  I  SG  +L ++ND+LD+SK+E+GK+++ FE  +
Sbjct: 515 LLLSEMLKENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIFEATN 573

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSG 722
           + +  +         A +K +      ++ IP +   D + ++QI  N+LSNA  FT  G
Sbjct: 574 ISDMAASMHQNFLHIAAQKNVEFTVEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKG 633

Query: 723 GQ------IIISTTHTS-----NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
                   +  S           + + + V+DTG+G+   + +   + F Q   +   + 
Sbjct: 634 SVSLHFDSVETSNLSHDMQSISKDWISISVKDTGIGIAKEQHQLIFEAFQQADGATIRKY 693

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            GTGLGL + K       G   + S   +G+   +  P
Sbjct: 694 GGTGLGLSICKEFARLLGGWITLESHVGEGSTFTVYIP 731


>gi|319649833|ref|ZP_08003984.1| sensor protein [Bacillus sp. 2_A_57_CT2]
 gi|317398413|gb|EFV79100.1| sensor protein [Bacillus sp. 2_A_57_CT2]
          Length = 614

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 84/543 (15%), Positives = 189/543 (34%), Gaps = 56/543 (10%)

Query: 279 NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL-SAYFDEGENLTPETVDKCPIPFFVYS 337
           N     +  +  ++ N        L       L      + E L  +   +       + 
Sbjct: 108 NGRTIIEFDFTTSILNEDGLYMCILRDVTSKRLLERKVKKNEELYADLFIEALDGIIFWR 167

Query: 338 H-GNLFYANPSFLLLTKYKSVDDIE--------IAGGLSTLLDAPKLSDNNAIKPVMLYR 388
             G +  AN +   + +    + +                 +        +    ++   
Sbjct: 168 GNGEIIDANEAACRIFECTHDELLNKKIKDFVYEKSERYKSIVKEMFVKGSIRDELVFLM 227

Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
            +    +    +                                I     +    ++ + 
Sbjct: 228 PNGQFKSLEFTVKLNSVEG---------------------YHMTIFRNVSERHAMEKSLR 266

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN--TP 506
               +   I E   +GI + N +  I+  N++  ++     ++++       L     T 
Sbjct: 267 ESEQKFRMIFEGALEGILLWNNQFEIVDINQSGQRMLQMTKKELIGVSLHSILNDCNITD 326

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQ 566
             +   +  I S   +          +  +K       +      S    T  DI+E  +
Sbjct: 327 DELKEQIKNIHSAG-QSDGNLSITLKSGRKKFFEFSNKLNIFSNIS--MTTFKDITEKLE 383

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
            + +L  +  +         +  A ++HEIR P+TA+ GF +++++          +  Y
Sbjct: 384 MEEQLRKSDTLHV-----IGELAAGIAHEIRNPMTALKGFIQLLEDSV-----KEDHTMY 433

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
            N I    + +  I+N+ L ++K ++    + F    + + + E + L+   A    +  
Sbjct: 434 FNVITTELSRIDSIINEFLILAKPQA----VKFVEKDISQIMKETVDLLSAQAVLHNVQF 489

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
           RT +  N+P +  +   +K++ +NI+ NAI   P GG I +S     + +V + +RD G 
Sbjct: 490 RTYYEKNLPNVFCESNQMKKVFINIIKNAIEVMPKGGYITVSIQKGFDHKVHISIRDEGT 549

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+  ++++K  +PF         +  GTGLGL +   +++ + G   + S   +GT+  I
Sbjct: 550 GIPAHKIKKLGEPFYTT------KERGTGLGLMVTYKIIEEHKGTIEVESKLGEGTVFHI 603

Query: 807 IFP 809
             P
Sbjct: 604 HLP 606



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 34/254 (13%), Positives = 75/254 (29%), Gaps = 18/254 (7%)

Query: 325 TVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
              +      ++     +   NPSF    K    D I         +           + 
Sbjct: 35  IFSRSNDGILIFDSQERIVDVNPSFAESIKTDKQDLIGRRLSD---IVPKNRHFKLEKQR 91

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
            +L + +    +    L     N    +   F          E+     I  +    R+ 
Sbjct: 92  ELLKKKE----SVRGILPIY--NGRTIIEFDFTTSI----LNEDGLYMCILRDVTSKRLL 141

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
           +RK++        +     DGI      G I+  N A  ++F    +++L K    F+ +
Sbjct: 142 ERKVKKNEELYADLFIEALDGIIFWRGNGEIIDANEAACRIFECTHDELLNKKIKDFVYE 201

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
            +       + E+       ++    +      +  SL   +K       +     ++SE
Sbjct: 202 KSER-YKSIVKEMFVKG---SIRDELVFLMPNGQFKSLEFTVKLNSVEGYHMTIFRNVSE 257

Query: 564 WKQEKNKLSHAKKI 577
               +  L  +++ 
Sbjct: 258 RHAMEKSLRESEQK 271



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/308 (11%), Positives = 90/308 (29%), Gaps = 18/308 (5%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D+   + +++    ++I      +IG RL D+             +LLK++ +  G    
Sbjct: 47  DSQERIVDVNPSFAESIKTDKQDLIGRRLSDIVPKNRHFKLEKQRELLKKKESVRGI-LP 105

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
                T +      +   I + +  +       I+             K+ ++ ++ L  
Sbjct: 106 IYNGRTIIEFDFTTS---ILNEDGLYM-----CILRDVTSKRLLERKVKKNEELYADLFI 157

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES-- 267
                    +   +I          R+             KD V +  +      +E   
Sbjct: 158 EALDGIIFWRGNGEIIDANEAA--CRIFECTHDELLNKKIKDFVYEKSERYKSIVKEMFV 215

Query: 268 --SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
             S+ ++  F   N    + +               + +     ++     E E      
Sbjct: 216 KGSIRDELVFLMPNGQFKSLEFTVKLNSVEGYHMTIFRNVSERHAMEKSLRESEQKFRMI 275

Query: 326 VDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
            +       ++++   +   N S   + +    + I     L ++L+   ++D+   + +
Sbjct: 276 FEGALEGILLWNNQFEIVDINQSGQRMLQMTKKELIG--VSLHSILNDCNITDDELKEQI 333

Query: 385 MLYRSDRT 392
               S   
Sbjct: 334 KNIHSAGQ 341


>gi|149192072|ref|ZP_01870297.1| hybrid sensory histidine kinase BarA [Vibrio shilonii AK1]
 gi|148834097|gb|EDL51109.1| hybrid sensory histidine kinase BarA [Vibrio shilonii AK1]
          Length = 939

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 83/341 (24%), Positives = 157/341 (46%), Gaps = 17/341 (4%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +F Y +   + +P +        ++++      L + +   +             +++ +
Sbjct: 191 IFAYRLMYDVTRPISHM-----KNMVDRIRRGHLDVRIEGKMHGELDSLKNGINAMAVSL 245

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
               +           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 246 SEYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTP 305

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+  +   +          +Y   I++S N +L+I+ND+LD SK+E+GK+ L  
Sbjct: 306 LNGVIGFTRQMLKTQLTN----SQTDYLQTIEKSANNLLNIINDILDFSKLEAGKLALEN 361

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P    +++ E ++L    A+EK + +     + IP  ++ D   ++QI  N++ N+I F
Sbjct: 362 IPFEFQDSLEEVVALQATSAHEKGLELTLKVDSKIPSGLVGDPLRIQQILTNLVGNSIKF 421

Query: 719 TPSGG---QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T  G     + + +      E+   VRDTG+G++  +  +  + F Q   S   R  GTG
Sbjct: 422 TERGNIDISVELKSQKEDRVELQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTG 481

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           LGL + + +V    G+  + S   +G+       L  T  P
Sbjct: 482 LGLVITQKLVGQMGGEISLTSRLHQGSTFWFTVKLNSTDIP 522


>gi|256159347|ref|ZP_05457133.1| PAS domain-containing protein [Brucella ceti M490/95/1]
          Length = 376

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 109/347 (31%), Positives = 177/347 (51%), Gaps = 28/347 (8%)

Query: 486 GYPVEDILRKP----FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
           G P  ++        F   +               LS      + +     T++  ++S+
Sbjct: 18  GVPRNEVDAHTRPFTFERRMANEHNRAGGQTFERQLSDGRWLQVNER---RTQDGGMVSI 74

Query: 542 RIIIKKL--------PFSSCYSLTMHDISEWKQEKNKLSHA-----------KKIAEKES 582
              I +L                T+HD+S  ++ +                 K+ AE  +
Sbjct: 75  GTDITQLKLHQERLVDSERRLMATVHDLSIARKGERDRVRELSELARKYSLEKERAEAAN 134

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
             KS+FLA +SHE+RTPL AIIGFSE+I+   FGPLG+ RY EY N I  SGN +L+++N
Sbjct: 135 RAKSEFLANMSHELRTPLNAIIGFSEMIQAGTFGPLGSDRYEEYINDIHTSGNFLLNVIN 194

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702
           D+LD+SKIE+G  +L  E + L   ++E + ++ L A EK I + T   + +  + AD R
Sbjct: 195 DILDMSKIEAGHFSLDREEIDLCPLINETVRIISLQAEEKNIAVETRIEDAM-ELYADRR 253

Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
           ++KQ+ +N+LSNA+ FT  GG+I +    T    + + ++DTGVG+    L K  +PF Q
Sbjct: 254 AIKQVLINLLSNAVKFTSYGGRITVRARKT-GAALFMTIQDTGVGIPKSALRKIGQPFEQ 312

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           + N       G+GLGL +++++ + + G   I ST   GT++ +  P
Sbjct: 313 VENQFTKTHTGSGLGLAISRSLAELHGGWLRIRSTERVGTVVSVCIP 359


>gi|148658559|ref|YP_001278764.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp.
           RS-1]
 gi|148570669|gb|ABQ92814.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp.
           RS-1]
          Length = 718

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 92/594 (15%), Positives = 205/594 (34%), Gaps = 40/594 (6%)

Query: 226 SQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTK 285
              +                  A +   +   +  L     +     E+   +      +
Sbjct: 155 QWSAAGVLAGSLGCGIVAIMTGARQQRSIMRLRSELQRERNTREARVEELEHLANELRLR 214

Query: 286 KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYAN 345
            +    L+   +     LS  +                 T         +    +    N
Sbjct: 215 MRERHALEEGLRAVTSTLSLDDVLEQILDSTVQTFGAERT-----HAVVLTLATDGTLTN 269

Query: 346 PSFLLLTKYKS--VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403
             +    + +   V+ +               +  +A    +     R+ +     +   
Sbjct: 270 RVYARDGQMRPQWVEPLIRRVMHDQAPAVVADAALDAELGAISRSGLRSIVCVPLFVGDG 329

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
                 ++         ++               +       ++  +   L ++L   +D
Sbjct: 330 PPRGALTVVSATFAAFSSSDARHLAAFAAQAGIAIGNAELHSRLRRQQQLLQAVLRDIND 389

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
           G+ +++ E  ++  N     L                  Q     M    + +       
Sbjct: 390 GLVVLDNEYNVVLANPIGQALLNDTSA-----------PQPWLERMRELASRLSDDGRPV 438

Query: 524 TLEKITLG-STKEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIA 578
              +   G    EE  +  + +  ++          ++ +HDI++ K E+          
Sbjct: 439 ASPEWVFGSPDAEEGQIVYQAVASRVHTDDDLPDLTAIVLHDITDHKAEE---------- 488

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
                 + DF++ VSHE+R PL  + GF +++  +R GPL +    ++    D     + 
Sbjct: 489 ----RARMDFISMVSHELRNPLHTLNGFVKLVLQERAGPLTS-LQQDFLKMADEQIEQLS 543

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
             V +LL+ ++ ++G++ L  +   L   ++  ++ ++L A ++++ + +   + +P   
Sbjct: 544 SRVAELLEYNRFKAGRLALQPDVGDLALLIAGTVNRLKLQAEQQQLALVSHVTH-LPLCR 602

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
            D + + Q+  N++ NAI  TP+GG I +S       EV +RV DTGVG+   EL K  +
Sbjct: 603 FDGQRIGQVLTNLIENAIKATPAGGTISVSADVHDQ-EVRVRVSDTGVGIPASELGKIFQ 661

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
            F Q+   ++  G   GLGL + + +V+ + G+ ++ S    GT      PL D
Sbjct: 662 RFYQVAKHRRTHGNNLGLGLAICQQIVEGHGGRIWVESEEGVGTTFTFTLPLAD 715


>gi|83312834|ref|YP_423098.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82947675|dbj|BAE52539.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 992

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 77/270 (28%), Positives = 132/270 (48%), Gaps = 10/270 (3%)

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
                  +   +        A+++AE+ +  K+ FLA +SHEIRTP+  +IG + ++ + 
Sbjct: 327 MVWIARLLDNRETAMATARQAQQVAERANQAKAAFLATMSHEIRTPMNGVIGMTGLLLDT 386

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
           +     +P    +A  I  S   +L ++ND+LD SK+E+GK++L      L   V   + 
Sbjct: 387 QL----DPEQRHFATTIRDSAESLLTVINDILDFSKLEAGKLDLESTDFELVGLVESIVD 442

Query: 674 LVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIIS--T 729
           ++   A+ K I I +    ++P  +  D   ++QI +N+  NAI FT  GG  I +   T
Sbjct: 443 ILAPRAHAKGIEIASMVDPDLPAWVRGDPGRLRQILMNLAGNAIKFTSHGGISIEVRDET 502

Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
           +      +   VRDTG+G+    + +    F Q+  S   R  GTGLGL ++K + +   
Sbjct: 503 SPDGAGRLRFDVRDTGIGIPQDAIGRLFSMFMQVDASTARRYGGTGLGLAISKRLTEMMG 562

Query: 790 GKFYIFSTPAKGTLIEIIFP--LYDTSHPH 817
           G   + STP  G+L     P  + +T+ P 
Sbjct: 563 GTIGVESTPGAGSLFWFSLPFQMVETAPPQ 592


>gi|317121133|ref|YP_004101136.1| multi-sensor signal transduction histidine kinase [Thermaerobacter
           marianensis DSM 12885]
 gi|315591113|gb|ADU50409.1| multi-sensor signal transduction histidine kinase [Thermaerobacter
           marianensis DSM 12885]
          Length = 969

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 103/714 (14%), Positives = 231/714 (32%), Gaps = 77/714 (10%)

Query: 129 PNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNR 188
           P+  +   L           L P+    L    +      +       G RG  I   +R
Sbjct: 296 PDLLVRHALASAREVARIVVLEPVA-RILRHHHE-----HWDGTGGPDGLRGTAIPLPSR 349

Query: 189 VDNDPRALGKRLDKKFSHLHE----IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244
           V     A    L +           +++  S  + +  +  +          + ++S + 
Sbjct: 350 VLAVAEAYLFALQRWGDADAAWDAVLRRAGSRYDPQVVEALAGARDLVGWAAEPRLSVVG 409

Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
           E     D + +  +     S    +   +D                 L+  +        
Sbjct: 410 ELAVAADQLRRFVREEGCRSGGRGVGFHDDHL---------------LRQAAGGVVALSH 454

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSF--LLLTKYKSVDDIEI 362
                + +   D+      +T             G + +  P+    +L      +    
Sbjct: 455 FARVINATLRPDQVAERVLDTF-------LEVLGGRVLWLVPAGPPAVLRVAGVRNAPPD 507

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA----MTFIPF 418
             G    L+ P           ++ R +     +       +W     L     +     
Sbjct: 508 LVGGELDLNRPPFRQLVEQDKALVIRLEPDQGPSWLLGGQRRWILAVPLVARGQLLAAVV 567

Query: 419 EKANQFPENMPQNGIEPEDVDTRINK--------RKMEIEVMQLCS-------ILEATSD 463
              +  P      G   + V ++            ++++ + +L S       + E    
Sbjct: 568 VVRDGPPPYPFTQGNLLDVVASQAALSLDNARLFEQVQLRLQELTSLKRFQDLVFEQVGT 627

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
           GI   +  G +   NR  +++         + P    L    P      L ++ +     
Sbjct: 628 GIVAADATGTVTLANRTAAEILRRAGWPGCQLPPPRPLGAGNPCDSM-LLEQLTARHPLP 686

Query: 524 TLEKITLGSTKEEKLLSLRIII--KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE 581
                         +++ +           +   + + D+++ ++ +      +    + 
Sbjct: 687 PRTWELEAEDGSPLVVTAQAFPLVGHDGERAGAVVLLRDVTQERELEQ-----RARRSER 741

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
            +      A  +HEIR PLTAI GF ++I  +  G         Y + + +  + +  IV
Sbjct: 742 LAAVGQLAAGAAHEIRNPLTAIKGFIQLIGRKLEG-----EAAGYMDIVLQEIDRIEGIV 796

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701
           NDLL +++           PV +   ++  + +++L    +   +  + A  +P ++AD 
Sbjct: 797 NDLLLLARP----PKPRLRPVDVGGLLARLVEMIRLDEAARGCTVELAVAGPLPPVVADE 852

Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTH-TSNEEVILRVRDTGVGMTNYELEKAMKPF 760
             ++Q+ LN++ N +   P+GG + +   +  + + V + V D G G+    L +   PF
Sbjct: 853 AQLRQVFLNLVRNGLDAMPAGGVLRVRALYDRATDTVQVEVEDRGPGIPPEHLNRIFDPF 912

Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
                    +  GTGLGL ++  +V  + G   + S P  GT + ++ P+   +
Sbjct: 913 F------STKEGGTGLGLAVSYGIVRNHGGHIDVDSEPGCGTRMRVVLPVAGPA 960



 Score = 43.1 bits (100), Expect = 0.19,   Method: Composition-based stats.
 Identities = 33/326 (10%), Positives = 93/326 (28%), Gaps = 25/326 (7%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTT 148
           DA G +   +    + +        G +L     +   +P ++ + + L  ++       
Sbjct: 633 DATGTVTLANRTAAEIL--RRAGWPGCQLPPPRPLGAGNPCDSMLLEQLTARHPLP--PR 688

Query: 149 LWPIEGTNL-YVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
            W +E  +   + +   A P+   + E +G     ++     + +     +R ++    +
Sbjct: 689 TWELEAEDGSPLVVTAQAFPLVGHDGERAGA--VVLLRDVTQERELEQRARRSERLA-AV 745

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
            ++  G +   +               +++ + +   +    + D ++     LL     
Sbjct: 746 GQLAAGAAHEIRNPLTAIKGFIQLIGRKLEGEAAGYMDIVLQEIDRIEGIVNDLLLLARP 805

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE---NLTPE 324
             P         L     +                ++    P ++      +   NL   
Sbjct: 806 PKPRLRPVDVGGLLARLVEMIRLDEAARGCTVELAVAGPLPPVVADEAQLRQVFLNLVRN 865

Query: 325 TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
            +D  P        G +      +   T    V+  +   G+      P    N    P 
Sbjct: 866 GLDAMP-------AGGVLRVRALYDRATDTVQVEVEDRGPGI------PPEHLNRIFDPF 912

Query: 385 MLYRSDRTCIAASARLHTIQWNRENS 410
              +   T +  +     ++ +  + 
Sbjct: 913 FSTKEGGTGLGLAVSYGIVRNHGGHI 938


>gi|300981268|ref|ZP_07175445.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           MS 200-1]
 gi|300307632|gb|EFJ62152.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           MS 200-1]
 gi|324013106|gb|EGB82325.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           MS 60-1]
          Length = 593

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 83/371 (22%), Positives = 171/371 (46%), Gaps = 28/371 (7%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            + +         I+E  +DG+  I+R+G + + N A   + GY   +++ +P+++    
Sbjct: 239 AQALRETRTLNDLIIENAADGVIAIDRQGDVTTMNPAAEVITGYQRHELVGQPYSMLF-- 296

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMH 559
              +     + + L                ++ + + L +   ++  +        +   
Sbjct: 297 -DNTQFYSPVLDTLEHGTEHV-ALEISFPGRD-RTIELSVTTSRIHNTHGEMIGALVIFS 353

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           D++  K+ + +++ A+++A        + +A V+HE+R PLTAI G+ ++++ Q   P+ 
Sbjct: 354 DLTARKETQRRMAQAERLAT-----LGELMAGVAHEVRNPLTAIRGYVQILRQQTRDPI- 407

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
              + EY + + +  + +  ++  LL+ S+    +    ++ VSL+  V E + LVQ   
Sbjct: 408 ---HQEYLSVVLKEIDSINKVIQQLLEFSRPRHSQ----WQQVSLNALVEETLVLVQTAG 460

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
            + R+   +   N +  I AD   +KQ+ LNIL NA+    + G+I I T   S+ +  +
Sbjct: 461 VQARVDFISELDNELSPINADRELLKQVLLNILINAVQAISARGKIRIRTWQYSDSQQAI 520

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            + D G G+     +K   PF     S      GTGLGL L++ +++A+ G   + S P 
Sbjct: 521 SIEDNGSGIDLSLQKKIFDPFFTTKAS------GTGLGLALSQRIINAHQGDIRVASLPG 574

Query: 800 KGTLIEIIFPL 810
            G    +I P+
Sbjct: 575 YGATFTLILPI 585



 Score = 40.4 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/117 (10%), Positives = 37/117 (31%), Gaps = 6/117 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G +  ++       G    +++G     +    +    + + D L+          
Sbjct: 263 IDRQGDVTTMNPAAEVITGYQRHELVGQPYSMLF--DNTQFYSPVLDTLEHGTEHVALEI 320

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
            +P     + + +  +   I++ + E  G     I        + +    + ++  +
Sbjct: 321 SFPGRDRTIELSVTTS--RIHNTHGEMIGA--LVIFSDLTARKETQRRMAQAERLAT 373


>gi|253698664|ref|YP_003019853.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           M21]
 gi|251773514|gb|ACT16095.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           M21]
          Length = 755

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 83/452 (18%), Positives = 186/452 (41%), Gaps = 31/452 (6%)

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
             + +  L+           R +   +      H        + +   +      +    
Sbjct: 318 AYIASRHLTGPLRQLAASARRIEEGDLDQRVVGHQRDEVGMLASSFNNMAESLKERDSII 377

Query: 428 MPQNGIEPEDVDT-----RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
             + G   E  +            + +E+ +L ++L + ++G+ + +R+ +++  N A  
Sbjct: 378 NRKTGDLQELNEQLERMVEQRTSALSMEMGRLEAVLTSLAEGVVVTDRDNLVVLFNPAAQ 437

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
           ++F      ++ +      E      +   + E    +  +  +K      K      L 
Sbjct: 438 QIFELVPHRVVGQSVERLCEMTGFCNVLEQVGEQTPRERNRGGKKEITVKGK-----RLN 492

Query: 543 IIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
           +    L   +       +++ D+++ +Q                  K++F++ VSHE++T
Sbjct: 493 VNKATLQDEAGEFAGMVMSLRDVTKEEQV--------------DRMKTEFISTVSHELKT 538

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
           PLT+I G  +++  +        R         R+   ++ +++++LDIS IESG M  +
Sbjct: 539 PLTSIKGSLQLLLTRSKWLTDTERQ--LLTVCFRNTQRLIRLISEILDISGIESGGMIFN 596

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718
           F+ + + E    A+  ++ YA  + I I  +   ++P +  D   + Q+  N+LSNA+ F
Sbjct: 597 FKSLCIGELAVYAVEEIKSYAMGRDITIVNTVGEHLPMVFGDSDRLIQVMTNLLSNAVKF 656

Query: 719 TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
           +P G  +++ T       V++ V D G  +   + +K  K F QI ++++ +  GTGLGL
Sbjct: 657 SPEGKVVMV-TAEQEGNYVVVSVADRGRVIQWSDRDKLFKKFQQIESTERGKIGGTGLGL 715

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            + K +V+ + G+ +  +    G       P+
Sbjct: 716 AICKEIVERHHGRIFYTAAKEYGNTFSFTVPI 747


>gi|296388461|ref|ZP_06877936.1| putative two-component sensor [Pseudomonas aeruginosa PAb1]
          Length = 741

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 90/379 (23%), Positives = 163/379 (43%), Gaps = 19/379 (5%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF--T 498
           +  +  +   +    ++++     ++I   +G +L+ NR   +      E         +
Sbjct: 101 QRTEADLSGRLALKQALVDGIPYPVSIRTLDGRLLACNRNYLESLRMTREQARGTLLTDS 160

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM 558
            ++E +   +M+     +         +          +LL +   +          L +
Sbjct: 161 DWVEGSKARLMHQQCLAVARGGTASFTDMAVRI---GGQLLEIHHWVTPYRDRQGRVLGL 217

Query: 559 ----HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E ++   +L  A + A++ +  KS FLA +SHEIRTP+ A+IG  E +  QR
Sbjct: 218 MNGWIDITERERLARQLREAMRQADEANRAKSVFLATMSHEIRTPMNAVIGILE-LVLQR 276

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
             P    R          +   +  ++ D+LD++KIESG + L  E V L   V     +
Sbjct: 277 LAPEQRERAS--LEVAYEAAGSLQLLIGDILDVAKIESGHLTLTPERVRLRHVVESVRRM 334

Query: 675 VQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
            +  A +K + +     +     +L D    KQ+  N++SNAI FT  G Q+ I     S
Sbjct: 335 FEGLARQKGLRLVVELDDAPGRDVLIDPLRFKQVLSNLVSNAIKFTERG-QVTIRLQERS 393

Query: 734 NEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
            +E    V + V D+G+G+   +  +  +PF Q+   +     GTGLGL + + +VD   
Sbjct: 394 LDEGRAIVRVDVEDSGIGIAPADQARLFQPFIQVAKGRT-VQGGTGLGLAICRKLVDLMG 452

Query: 790 GKFYIFSTPAKGTLIEIIF 808
           G   + S P KGT + +  
Sbjct: 453 GDVEMHSEPGKGTRVSLDL 471


>gi|162452262|ref|YP_001614629.1| protein kinase [Sorangium cellulosum 'So ce 56']
 gi|161162844|emb|CAN94149.1| Protein kinase [Sorangium cellulosum 'So ce 56']
          Length = 2003

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 124/693 (17%), Positives = 227/693 (32%), Gaps = 45/693 (6%)

Query: 154  GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND-----PRALGKRLDKKFSHLH 208
            GT+ +  +      + + +       G  +   +R            L + L+     + 
Sbjct: 1079 GTHYFEAVASWCDLLNAADGAGRLLSGEPLSRGSRSLLADGDGMAAELARILEAHLFLVA 1138

Query: 209  EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
                   S  +E           P +       +L       +     E+  L    E  
Sbjct: 1139 GAYPMALSRAREAEQFRVSIFGFPPVTDIPLWLALAAARCWPEAADAAERDGLRDDIEQG 1198

Query: 269  LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
            L     F   +   +  K      ++   +     +   +        E      E +  
Sbjct: 1199 LARLRYFAEGSAENFLHKLRLLEAEHARVQGKTDEAMARYDEAIELAREQRFFHIEALAA 1258

Query: 329  CPIPFFVYSHGNLFYANPSFLLLTK-YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
                 F    G    A          Y   +   +   L     A   +           
Sbjct: 1259 QLCAEFHLEAGRRRVAALYLREARDAYVRWEAHAVVAHLEARWPALLRAPAQPATAERRR 1318

Query: 388  RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
             +    +  +      Q +   ++        + +          +  E    +     +
Sbjct: 1319 TTGVATLTTTGVAGGAQLDVNTAVRAARALSSELDPERVVGRLMELVLESAGAQRGVL-L 1377

Query: 448  EIEVMQLCSILEATSDGIAIINREGIIL--------------STNRAVSKLFGYPVEDIL 493
              E  +L  +   + +G       G I                T          PV    
Sbjct: 1378 LGEGEELSVVARLSVEG-------GRIETGLSEPLSQSSEVARTVAHYVARTNEPVVVDD 1430

Query: 494  RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL-------EKITLGSTKEEKLLSLRIIIK 546
             +    F      +  +      L L  R  L        +    +  E ++  L ++  
Sbjct: 1431 ARSDARFAADPHLASRSVLSLLSLPLSHRGRLVGVLYLEHREVPAAFPERRVELLSVLAA 1490

Query: 547  KLPFSSCYSLTMHDISEW-KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
            +   +   +L   D+    K+   +L  AK+ AE+ S  KSDFL+ +SHE+RTPL  I+G
Sbjct: 1491 QAAIAVENALLYRDLEAKIKERTVELRIAKEAAERASQAKSDFLSSMSHELRTPLNGIMG 1550

Query: 606  FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
             +++++     P   P + E    I +S   +L ++NDLL ++KIE+GKM+       L 
Sbjct: 1551 HAQILERTPDVP---PAWREGLRVIQKSSEHLLSLINDLLHLAKIEAGKMDSVLTEFRLP 1607

Query: 666  EAVSEAISLVQLYANEKRILIRTSF-ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724
              V   + L ++ A  K I          +  + AD + + Q+ LN+L NAI FT  GG 
Sbjct: 1608 ALVRTVVDLCRVRAEAKGITFSDELRGPALQAVCADEKRLMQVLLNLLGNAIKFTERGGV 1667

Query: 725  -IIISTTHT---SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
             + +        +   V  R+ DTG G+    L +  +PF Q+   Q  + EGTGLGL +
Sbjct: 1668 SLHVEVLEETVPAGRMVRFRIEDTGPGIAPEHLSRIFEPFEQV-GEQSAKSEGTGLGLAI 1726

Query: 781  AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
             K +V    G   + S   +G++  +  PL + 
Sbjct: 1727 TKKLVQQMGGAIEVQSEVGEGSVFAVTLPLAEA 1759


>gi|160891792|ref|ZP_02072795.1| hypothetical protein BACUNI_04249 [Bacteroides uniformis ATCC 8492]
 gi|156858270|gb|EDO51701.1| hypothetical protein BACUNI_04249 [Bacteroides uniformis ATCC 8492]
          Length = 867

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 95/534 (17%), Positives = 180/534 (33%), Gaps = 29/534 (5%)

Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANP 346
                + N +ES + +  +    +     E  +               Y     + + N 
Sbjct: 347 VAWLFRANRRESRKRIHAQTRLLIQHRLVEQRDEFDNIFCSIRDGLITYDTDLRIHFVNR 406

Query: 347 SFLLLTKYKSV---DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403
             L +    S              ++       +N     +   R+ +  I+   +    
Sbjct: 407 PLLQMLGLSSETYTSRFYEGQMAGSIFRIYMNGENILQDLLKKVRTGKRPISIPEKAFMQ 466

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
           + ++     ++                        +        E++       +E +S 
Sbjct: 467 ENHQGTYFPVSGEVVPIFANEKMTGMAIVCRNISEE--------EMQRRFFNMAVEESSI 518

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVE-DILRKP-FTVFLEQNTPSVMNHYLTEILSLDL 521
                N           + + FGY  + D+L +      +              IL L  
Sbjct: 519 YPWQYNMHMNRFHFPGGLLRRFGYTDDTDLLARDEMDTLIHPEDLLHTRRNFDAIL-LGN 577

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPF-----SSCYSLTMHDISEWKQEKNKLSHAKK 576
                      + +                              I  +K  +  L  A+ 
Sbjct: 578 EINSRMSFRLKSADGSYEWWEFRSTAYDGLTVDTPYMVLGVCQSIQRYKDTEEALIAARD 637

Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
            A +    KS FLA +SHEIRTPL AI+GFS+++K+            ++   I+ +  L
Sbjct: 638 RALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLKD--LDAFSPEEVKQFVETININCTL 695

Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696
           +L ++ND+LD+S+IESG M+  F   +L   + E     +L      + +R        +
Sbjct: 696 LLALINDILDLSRIESGTMDFKFGAFNLAFIMQEVHESQRLSMPR-DVELRIEIPEGEDK 754

Query: 697 -ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755
            ++ D   +KQ+  N+++NA  FT +G  I             + V DTG G++    + 
Sbjct: 755 LVITDSVRLKQVVNNLINNAKKFTVTGS-ITFGYVTNREGYTTIFVEDTGSGISEDAQKH 813

Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             + F +  +      +G GLGL + + +VD   G   + S   KGT  E++ P
Sbjct: 814 IFERFYKEDSFT----QGAGLGLSICQTIVDRLHGSISVSSELGKGTRFEVVIP 863


>gi|254241747|ref|ZP_04935069.1| hypothetical protein PA2G_02458 [Pseudomonas aeruginosa 2192]
 gi|126195125|gb|EAZ59188.1| hypothetical protein PA2G_02458 [Pseudomonas aeruginosa 2192]
          Length = 741

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 90/379 (23%), Positives = 163/379 (43%), Gaps = 19/379 (5%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF--T 498
           +  +  +   +    ++++     ++I   +G +L+ NR   +      E         +
Sbjct: 101 QRTEADLSGRLALKQALVDGIPYPVSIRTLDGRLLACNRNYLESLRMTREQARGTLLTDS 160

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM 558
            ++E +   +M+     +         +          +LL +   +          L +
Sbjct: 161 DWVEGSKARLMHQQCLAVARGGTASFTDMAVRI---GGQLLEIHHWVTPYRDRQGRVLGL 217

Query: 559 ----HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E ++   +L  A + A++ +  KS FLA +SHEIRTP+ A+IG  E +  QR
Sbjct: 218 MNGWIDITERERLARQLREAMRQADEANRAKSVFLATMSHEIRTPMNAVIGILE-LVLQR 276

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
             P    R          +   +  ++ D+LD++KIESG + L  E V L   V     +
Sbjct: 277 LAPEQRERAS--LEVAYEAAGSLQLLIGDILDVAKIESGHLTLTPERVRLRHVVESVRRM 334

Query: 675 VQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
            +  A +K + +     +     +L D    KQ+  N++SNAI FT  G Q+ I     S
Sbjct: 335 FEGLARQKGLRLVLELDDAPGRDVLIDPLRFKQVLSNLVSNAIKFTERG-QVTIRLQERS 393

Query: 734 NEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
            +E    V + V D+G+G+   +  +  +PF Q+   +     GTGLGL + + +VD   
Sbjct: 394 LDEGRAIVRVDVEDSGIGIAPADQARLFQPFIQVAKGRT-VQGGTGLGLAICRKLVDLMG 452

Query: 790 GKFYIFSTPAKGTLIEIIF 808
           G   + S P KGT + +  
Sbjct: 453 GDVEMHSEPGKGTRVSLDL 471


>gi|323499853|ref|ZP_08104812.1| phosphate regulon sensor protein [Vibrio sinaloensis DSM 21326]
 gi|323315094|gb|EGA68146.1| phosphate regulon sensor protein [Vibrio sinaloensis DSM 21326]
          Length = 432

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 80/413 (19%), Positives = 158/413 (38%), Gaps = 36/413 (8%)

Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
             RL    W+ +            +         NGI       R  ++++   + +  +
Sbjct: 50  QMRLSAWLWDEKR-------LTPPSGTGNWESLFNGIYRLQQRQRKKRKELTNLIRRFRN 102

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
             E+  D + +   EG I+  NR    L G+   D   +P +  +         +     
Sbjct: 103 GAESLPDAVVVFRGEGNIVWCNRLAQHLLGFKWPDDSGQPISNLIRTPDFIKYLNKQDFS 162

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKK 576
             L++R  L    +          L + I        + + + D+++ KQ +        
Sbjct: 163 EPLEMRSPLNVERM----------LELRIVPYTEGE-HLMVVRDVTQLKQLEG------- 204

Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
                   + +F A VSHE+RTP+T + G+ E+   +    +  P + +    +    N 
Sbjct: 205 -------MRRNFFANVSHELRTPMTVLQGYLEM--TEDPDMVVGPMWTKAHGVMTEQLNR 255

Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696
           +  +VN LL +SKIE+  M+   E V++   +          + +    +     +++ R
Sbjct: 256 MNSLVNQLLTLSKIEAAPMHELDEVVNVPAMLEVLEKEAASLSGDDGHKLHFDVDSSL-R 314

Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKA 756
           + AD   ++    N++ NA+ +TP G +I +    T+     L V D G G+    L + 
Sbjct: 315 VFADEDQMRSAISNLVYNAVKYTPPGAEIYVRWYQTAQG-ASLEVEDKGDGIEPQHLHRL 373

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            + F ++  ++     G+GLGL + K  +  +     I S    G+    I P
Sbjct: 374 TERFYRVDKARSRDTGGSGLGLAIVKHALSHHDAHLEIQSEVGVGSKFSFILP 426


>gi|56414910|ref|YP_151985.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|168242719|ref|ZP_02667651.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|194451603|ref|YP_002046927.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|197363838|ref|YP_002143475.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56129167|gb|AAV78673.1| sensor protein [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|194409907|gb|ACF70126.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|197095315|emb|CAR60872.1| sensor protein [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|205338112|gb|EDZ24876.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
          Length = 918

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 87/333 (26%), Positives = 154/333 (46%), Gaps = 17/333 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +FG+ +   +  P    +               L   +   +             +++ +
Sbjct: 193 IFGWRLMRDVTGPIRNMVNTVDR-----IRRGQLDSRVEGFMLGELDMLKNGINSMAMSL 247

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 248 AAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTP 307

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+ +          NP   ++ N I+RS N +L I+ND+LD SK+E+GK+ L  
Sbjct: 308 LNGVIGFTRLTLKTEL----NPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILES 363

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P  L   + E ++L+   +++K + +  +  N++P  ++ D   ++Q+  N++ NAI F
Sbjct: 364 IPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKF 423

Query: 719 TPSGGQ-IIISTTHTSNEEVILRV--RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T SG   I++     SN +V + V  RDTG+G+   +  +  + F Q   S   R  GTG
Sbjct: 424 TESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTG 483

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           LGL + + +V+   G     S P +G+      
Sbjct: 484 LGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516


>gi|262196343|ref|YP_003267552.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
 gi|262079690|gb|ACY15659.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
          Length = 859

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 91/413 (22%), Positives = 171/413 (41%), Gaps = 29/413 (7%)

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
             +     E +        +++     +   + +A+ + +A+ + EG I+  N A  +LF
Sbjct: 168 TVLAARVREQDRQRVAAQAQQLLESDARYRELFDASVEAMAVCD-EGRIVEVNPAFERLF 226

Query: 486 GYPVEDILRKPFTVFLEQNTPSV--MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
                +   +P  VF++Q           +         + L   ++G   +     + +
Sbjct: 227 RCRATEAKDQPLAVFVDQALAPSDGAAASIEGSGIRITGRELAVESIGRRPDGASFPVEL 286

Query: 544 ---IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
                ++L       + + DIS  K+ +  L  AK++AE  +  K+ FL  +SHE+RTP+
Sbjct: 287 RRATGRQLGERIVDVVGLRDISAHKRIEATLVEAKELAEAAARAKTTFLTSMSHELRTPM 346

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
            AIIG + ++ +            +Y   I   G+ +L I+ND+LD +++ESG + L  E
Sbjct: 347 NAIIGMTGLLLDGPLASA----QRDYVETIREGGDALLTIINDILDYAQMESGTLRLDCE 402

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFT 719
              L   V  A  LV   A  K++ +       +P  +  D   ++QI + ILSNA+ FT
Sbjct: 403 RFDLYRCVESAAELVAAQAAAKQLELDVFLDPALPSFVYGDEARLRQILVEILSNALKFT 462

Query: 720 PSGGQIIIST----------------THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
             G   +++                        +   V DTG+G++N +     + F Q+
Sbjct: 463 ERGLVRLVAAPGEAPASGGGDRAGAPGADDTAVLSFHVSDTGIGISNAQQADLFQSFRQL 522

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE--IIFPLYDTS 814
             S+     GTGLGL + + + +   G   + S    G      +  P   ++
Sbjct: 523 DGSRSRSYGGTGLGLAICRYLAEHMGGAIAVDSELGAGATFHVVVRLPADRSA 575



 Score = 55.4 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/236 (8%), Positives = 54/236 (22%), Gaps = 14/236 (5%)

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
           ++ +          +       +                                     
Sbjct: 114 LAPMLTSVWFSVGAIILVTLLEVVVLVLLTVYLLGSPEPVAQSSLLFLLITGFLTVLAAR 173

Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVD- 358
                 +   + +    E +    E  D       V   G +   NP+F  L + ++ + 
Sbjct: 174 VREQDRQRVAAQAQQLLESDARYRELFDASVEAMAVCDEGRIVEVNPAFERLFRCRATEA 233

Query: 359 -----------DIEIAGGLSTLLDAPKLS--DNNAIKPVMLYRSDRTCIAASARLHTIQW 405
                       +  + G +  ++   +           +  R D        R  T + 
Sbjct: 234 KDQPLAVFVDQALAPSDGAAASIEGSGIRITGRELAVESIGRRPDGASFPVELRRATGRQ 293

Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
             E  + +  +    A++  E       E  +   R     +     +L + + A 
Sbjct: 294 LGERIVDVVGLRDISAHKRIEATLVEAKELAEAAARAKTTFLTSMSHELRTPMNAI 349


>gi|322420773|ref|YP_004199996.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
 gi|320127160|gb|ADW14720.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
          Length = 1051

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 115/794 (14%), Positives = 236/794 (29%), Gaps = 107/794 (13%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK 146
           W +D  G +  +++   +  G    +M+   L D  +             +        +
Sbjct: 155 WVVDLRGNIVCVNDAACRMYGYSREEMVTKTLADFGEEGGA---GERRQRIMALGYDRFE 211

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
           T     +G+ + V + +   P    + +F  F     +       +        + ++  
Sbjct: 212 TVHRRKDGSQIEVEVSVTFTP---GSGQFLAF-----LQDISSKKEAERALHESEARYRA 263

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT----EYYAHKDDVLKTEKYPLL 262
           + + +       +    +        H   K +   L       +  +D          +
Sbjct: 264 MVQTQAEFVVRYRRGGFLTFINDTYCHYLQKERSELLGKSFYPLFFLQDREALIHCVESM 323

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN-- 320
             EE S   +      +     +K     + +++    E+ +     + S   +E     
Sbjct: 324 NEEEQSQMLELRAWLPDGRLVWQKWNNSAILDDAGRVVEFQATGMDITRSKQAEESLRKS 383

Query: 321 --LTPETVDKCPIPFFVYS---------HGNLFYANPSFLLLTKYKSVDDIEIAGG--LS 367
                   D     F                    N SF  LT       +    G  +S
Sbjct: 384 EERYRSLFDNMLNGFAYCRMILDSSLPLDFVFLEVNRSFERLTG------LRGVSGKRIS 437

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ-------WNRENSLAMTFIPFEK 420
            +L     SD   +                  L  I        ++ E    +T      
Sbjct: 438 EVLPDAGSSDPELLAAFRRVALSGKPEQLEYYLCAISEWLSISVYSPEPGCFVTVFDVIT 497

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN--REGII---- 474
             +  E             T   +    +    L S L+   D I  I+   +G +    
Sbjct: 498 KRKRTEECLAFLAHSTSNTTSEEQFFHRLAR-YLASTLDM--DYIC-IDQLEDGNLWAST 553

Query: 475 --LSTNRAVSKLFGY-----PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
             +  N    +   Y     P  +++ +    + E       N  +  +  L     +  
Sbjct: 554 VAVYYNGNFEENVRYTLQDTPCGEVVGRSVCCYREGVRHLFPNDLV--LQELKAESYVGV 611

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSL--TMHDISEWKQEKNKLSHAKKIAEKESSHK 585
           +  G       + L   I   P ++       +  +S     + +    ++   +     
Sbjct: 612 VLWG--SSGVPIGLIATIGCKPLANRELAEEILQMVSGRAAAEMERRIHEEERLRLERQL 669

Query: 586 SD---------FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
                          ++H+    LT I+G S  +   R  P      +E    I++    
Sbjct: 670 LHAQKLESLGILAGGIAHDFNNILTGILGNS-SLGLMRCPPDSPA--VENLQNIEKGAIR 726

Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696
             D+   +L  S    GK     EPV+L+  ++E + L+++    K   +R   A  +P 
Sbjct: 727 AADLARQMLAYS----GKGMFVVEPVNLNTLLTEMVHLLEVSI-SKNAQLRFELAQGLPP 781

Query: 697 ILADLRSVKQIALNILSNAIHF-TPSGGQIIISTTHT-----------------SNEEVI 738
           + AD   ++QI +N++ NA       GG I I + +                    + + 
Sbjct: 782 VQADPTQLRQIVMNLVINASEAIGDKGGTITIRSGYRHFDQRYLKSAWSEKGIKEGDFLF 841

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           L+V+D+G GM    L +   PF         +  G GLG+     ++  + G   + S  
Sbjct: 842 LQVKDSGCGMDEATLSRIFDPFFTT------KFTGRGLGMSAVLGIIRGHKGAIRVESVS 895

Query: 799 AKGTLIEIIFPLYD 812
            +GT   I+ P  +
Sbjct: 896 GQGTTFTIVLPASN 909



 Score =  112 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 50/522 (9%), Positives = 134/522 (25%), Gaps = 39/522 (7%)

Query: 92  HGYLKEISEELPKTIGNYAF----KMIGMRLCDVSDI----LHIDPNNHIGDLLKRQNTW 143
            G   E++    +  G          +G     +S      L  D +  +     R+   
Sbjct: 25  DGTPVEVNPAALEIFGMGRDQFLQHRVGHPRWHLSTPQGKELTADQHPAMSAFRCRRAIC 84

Query: 144 -YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
                   P     L + +D  A+P+ +            ++         +    +   
Sbjct: 85  GINLDIYNPRRERTLRISMD--AIPLATEGGSVP-SHVCVLLREITKRRRDQRRESQAAL 141

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
           ++  L         V   + +I         +   ++   +T+  A   +     +    
Sbjct: 142 QYELLANTSMDGYWVVDLRGNIVCVNDAACRMYGYSREEMVTKTLADFGEEGGAGERRQR 201

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
                    +      + +Q   +        + +         +         E E   
Sbjct: 202 IMALGYDRFETVHRRKDGSQIEVEVSVTFTPGSGQFLAFLQDISSKKEAERALHESEARY 261

Query: 323 PETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
              V         Y   G L + N ++    + +  + +        L            
Sbjct: 262 RAMVQTQAEFVVRYRRGGFLTFINDTYCHYLQKERSELLGK--SFYPLFFLQDREALIHC 319

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
              M        +   A L          +   +      +     +       +   ++
Sbjct: 320 VESMNEEEQSQMLELRAWL-----PDGRLVWQKWNNSAILDDAGRVVEFQATGMDITRSK 374

Query: 442 INKRKMEIEVMQLCSILEATSDGI----AIINR----EGIILSTNRAVSKLFGYPVEDIL 493
             +  +     +  S+ +   +G      I++     + + L  NR+  +L G     + 
Sbjct: 375 QAEESLRKSEERYRSLFDNMLNGFAYCRMILDSSLPLDFVFLEVNRSFERLTGLRG--VS 432

Query: 494 RKPFTVFLE--QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
            K  +  L    ++   +      +      + LE      ++      L I +   P  
Sbjct: 433 GKRISEVLPDAGSSDPELLAAFRRVALSGKPEQLEYYLCAISE-----WLSISVYS-PEP 486

Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
            C+      I++ K+ + +       +   ++ +  F  R++
Sbjct: 487 GCFVTVFDVITKRKRTE-ECLAFLAHSTSNTTSEEQFFHRLA 527



 Score = 50.8 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/154 (10%), Positives = 47/154 (30%), Gaps = 21/154 (13%)

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
            Q  ++      G  I   +G  +  N A  ++FG   +  L+          +      
Sbjct: 6   EQCRALFNELPLGAFIQKSDGTPVEVNPAALEIFGMGRDQFLQHRVGHPRWHLSTPQGKE 65

Query: 512 -------YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-----YSLTMH 559
                   ++          +        +E + L + +    L            + + 
Sbjct: 66  LTADQHPAMSAFRCRRAICGINLDIYNPRRE-RTLRISMDAIPLATEGGSVPSHVCVLLR 124

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
           +I++ ++++      ++ ++    +  + LA  S
Sbjct: 125 EITKRRRDQ------RRESQAALQY--ELLANTS 150



 Score = 45.0 bits (105), Expect = 0.058,   Method: Composition-based stats.
 Identities = 50/433 (11%), Positives = 113/433 (26%), Gaps = 44/433 (10%)

Query: 57  QNQESVSNTNYLDSENTFVFDPIPRT-VRFTWNIDAHGYLKEISEELPKTIGNYAFKMIG 115
           Q+  S         E+   +  + +T   F       G+L  I++     +     +++G
Sbjct: 242 QDISSKKEAERALHESEARYRAMVQTQAEFVVRYRRGGFLTFINDTYCHYLQKERSELLG 301

Query: 116 MRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL-WPIEGTNLYVPIDLAALPIYSRNRE 174
                +  +   +   H  + +  +          W  +G    V        I      
Sbjct: 302 KSFYPLFFLQDREALIHCVESMNEEEQSQMLELRAWLPDGRL--VWQKWNNSAILDDAGR 359

Query: 175 FSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSS--------------VEKE 220
              F+  G+              ++ ++++  L +      +              V  E
Sbjct: 360 VVEFQATGM--DITRSKQAEESLRKSEERYRSLFDNMLNGFAYCRMILDSSLPLDFVFLE 417

Query: 221 KYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINL 280
               F + +    +  K     L +  +   ++L   +   L+ +   L       +  L
Sbjct: 418 VNRSFERLTGLRGVSGKRISEVLPDAGSSDPELLAAFRRVALSGKPEQLEYYLCAISEWL 477

Query: 281 NQYTKKQYFG-----------TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
           +        G             +     +F   S  N  S   +F         T+D  
Sbjct: 478 SISVYSPEPGCFVTVFDVITKRKRTEECLAFLAHSTSNTTSEEQFFHRLARYLASTLDMD 537

Query: 330 PIPFFVYSHGNL------FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
            I       GNL       Y N +F    +Y   D         ++    +   +     
Sbjct: 538 YICIDQLEDGNLWASTVAVYYNGNFEENVRYTLQDTPCGEVVGRSVCCYREGVRHLFPND 597

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
           ++L       + A + +  + W   + + +  I                I          
Sbjct: 598 LVL-----QELKAESYVGVVLW-GSSGVPIGLIATIGCKPLANRELAEEILQMVSGRAAA 651

Query: 444 KRKME-IEVMQLC 455
           + +    E  +L 
Sbjct: 652 EMERRIHEEERLR 664


>gi|254502891|ref|ZP_05115042.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Labrenzia alexandrii DFL-11]
 gi|222438962|gb|EEE45641.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Labrenzia alexandrii DFL-11]
          Length = 807

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 87/380 (22%), Positives = 162/380 (42%), Gaps = 11/380 (2%)

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
           +      ++     +  SIL    D +   ++ G+I   N A   +FG   E    +   
Sbjct: 146 ELEDQAWELGESDERHASILGTLGDVVIRRDQAGMITYANSAADDVFGKDHELQPGRLMQ 205

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS-LT 557
           + +       +        +       +     +  E     + I ++            
Sbjct: 206 LPIANKVAGEIFDLDAPAENNGGIGFGDLRLRTAQGERWFSRIDIPVRDTATDRQLVQTV 265

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
           + D++E +  + +L  A+  AE  +  KS FLA VSHEIRTPL  ++G + ++++ R   
Sbjct: 266 LRDVTERRLIEEELLAARHSAETSNEAKSRFLATVSHEIRTPLNGVLGMAALLRDTRLTK 325

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
                   Y   ++ SG  +L +++++LD SK+E+GK+++H  P+ +       + L+  
Sbjct: 326 ----EQSAYIKALETSGETLLLLIDEVLDFSKVEAGKLDIHAAPIKVGALAESVVELLAP 381

Query: 678 YANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTT----HT 732
            A+ K + I T   + +P  +  D   V+QI  N++ N + FT  GG + +         
Sbjct: 382 KAHAKHLEIGTLIDSRLPEHVTLDATRVRQILFNLIGNGVKFTDDGG-VAVELHGRPNLE 440

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
               + L VRDTG+G    E E+  + F Q+ +    +  GTGLGL +A+ +     G  
Sbjct: 441 GGSFLDLVVRDTGIGFAADEAERLFQEFEQVDHGPARKFGGTGLGLAIAQRLAHLMGGGI 500

Query: 793 YIFSTPAKGTLIEIIFPLYD 812
                   G L E+  P+ +
Sbjct: 501 SARPASEGGALFEVSLPIPE 520


>gi|207858224|ref|YP_002244875.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|206710027|emb|CAR34382.1| sensor protein [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
          Length = 918

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 87/333 (26%), Positives = 154/333 (46%), Gaps = 17/333 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +FG+ +   +  P    +               L   +   +             +++ +
Sbjct: 193 IFGWRLMRDVTGPIRNMVNTVDR-----IRRGQLDSRVEGFMLGELDMLKNGINSMAMSL 247

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 248 AAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTP 307

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+ +          NP   ++ N I+RS N +L I+ND+LD SK+E+GK+ L  
Sbjct: 308 LNGVIGFTRLTLKTEL----NPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILES 363

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P  L   + E ++L+   +++K + +  +  N++P  ++ D   ++Q+  N++ NAI F
Sbjct: 364 IPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKF 423

Query: 719 TPSGGQ-IIISTTHTSNEEVILRV--RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T SG   I++     SN +V + V  RDTG+G+   +  +  + F Q   S   R  GTG
Sbjct: 424 TESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTG 483

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           LGL + + +V+   G     S P +G+      
Sbjct: 484 LGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516


>gi|197249783|ref|YP_002147868.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197213486|gb|ACH50883.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
          Length = 918

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 87/333 (26%), Positives = 154/333 (46%), Gaps = 17/333 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +FG+ +   +  P    +               L   +   +             +++ +
Sbjct: 193 IFGWRLMRDVTGPIRNMVNTVDR-----IRRGQLDSRVEGFMLGELDMLKNGINSMAMSL 247

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 248 AAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTP 307

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+ +          NP   ++ N I+RS N +L I+ND+LD SK+E+GK+ L  
Sbjct: 308 LNGVIGFTRLTLKTEL----NPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILES 363

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P  L   + E ++L+   +++K + +  +  N++P  ++ D   ++Q+  N++ NAI F
Sbjct: 364 IPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKF 423

Query: 719 TPSGGQ-IIISTTHTSNEEVILRV--RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T SG   I++     SN +V + V  RDTG+G+   +  +  + F Q   S   R  GTG
Sbjct: 424 TESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTG 483

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           LGL + + +V+   G     S P +G+      
Sbjct: 484 LGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516


>gi|255011543|ref|ZP_05283669.1| putative two-component system sensor kinase/response regulator
           fusion protein [Bacteroides fragilis 3_1_12]
          Length = 557

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 96/394 (24%), Positives = 162/394 (41%), Gaps = 28/394 (7%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTN-------------RAVSKLFG----Y 487
           RK+E       +IL      + +I+ +  +L TN             + V  L       
Sbjct: 34  RKLENVNRLFDAILTHIHAYVLVIDSDFKVLKTNYYDLTHLNPDGKEKRVGDLLQCQNAL 93

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
             +                ++   +  +    DL+ +L          +  + +  +   
Sbjct: 94  SAKGGCGTHAFCQECPVRGAIGAAFRQKSEFTDLQSSLNIAIGEDEFIKCNVMISGVFMT 153

Query: 548 LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
           L       LT+HDI+  K  +  L+ AK+ AE     KS FLA +SHEIRTPL AI+GFS
Sbjct: 154 LDGEDRMVLTVHDITSIKHTEEALAEAKEKAENADRSKSAFLANMSHEIRTPLNAIVGFS 213

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
           E++              +Y   +  +  L+L +VND+LD+SKIE+G +   +  V ++  
Sbjct: 214 ELLA----AATEEKEKQKYLEILHTNSELLLQLVNDILDLSKIEAGTLEFVYSDVDINLL 269

Query: 668 VSEAISLVQLYAN-EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726
           +++   L  +    +  + I T        + +D   + Q+  N +SNAI FT  G  I 
Sbjct: 270 LADLEQLFHMKIGYDSPVQIITEAGLPSCMVHSDRNRIAQVVSNFVSNAIKFTTEGS-IR 328

Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
           I      N  +   V DTG G++  +L      F ++ + +     GTGLGL + K +V+
Sbjct: 329 IGYKPCENG-LRFYVTDTGSGISADKLGGVFDRFVRLQSDKN----GTGLGLSICKTIVN 383

Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820
              G+    S   +G+      P +    P   I
Sbjct: 384 KLGGEIGAESVVGQGSTFWFTLPEHSDIKPKVII 417


>gi|238751207|ref|ZP_04612701.1| Sensor kinase protein rcsC [Yersinia rohdei ATCC 43380]
 gi|238710481|gb|EEQ02705.1| Sensor kinase protein rcsC [Yersinia rohdei ATCC 43380]
          Length = 949

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 96/375 (25%), Positives = 162/375 (43%), Gaps = 29/375 (7%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
             ++E        I+ +   GI+I+  R+G  + +N                  +   L 
Sbjct: 351 ALRLEEHEQFNRKIVASAPVGISILRIRDGTNILSNELA-------------HNYINLLT 397

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
                 +   + E  +  +           T     L +  +  +          + DIS
Sbjct: 398 NEDRERITRIICEQQANFVDVM--------TSNNNNLQISFVHSRYRNEDVAICVLVDIS 449

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
              + +  L      AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R
Sbjct: 450 SRVKMEESLQEMAAAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPQGVDR 508

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                  ++ S +L+L I++D+LD SKIES ++ +     S  E ++   +       +K
Sbjct: 509 ---LVTAMNNSSDLLLKIISDILDFSKIESEQLKIEPSEFSTVEVITHITANYLPLVVKK 565

Query: 683 RILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
           R+ +      ++PR++  D   ++Q+  N+L+NAI FT +G  II+         +  RV
Sbjct: 566 RLGLYCFIEPDVPRLMLGDAVRLQQVISNLLNNAIKFTDTG-CIILQVRVR-GYYLEFRV 623

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
           RDTGVG+   E+ +   PF Q+    Q   +GTGLGL + + +V+   G   + S    G
Sbjct: 624 RDTGVGINAREINQLFDPFFQVGTGVQRHFQGTGLGLAICEKLVNLMDGDVEVDSELGMG 683

Query: 802 TLIEIIFPLYDTSHP 816
           ++  I  PLY   +P
Sbjct: 684 SIFAIRIPLYQAKNP 698


>gi|229004342|ref|ZP_04162126.1| hypothetical protein bmyco0002_13030 [Bacillus mycoides Rock1-4]
 gi|228756909|gb|EEM06170.1| hypothetical protein bmyco0002_13030 [Bacillus mycoides Rock1-4]
          Length = 423

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 81/371 (21%), Positives = 153/371 (41%), Gaps = 39/371 (10%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            ++ E  QL SIL + +DG+  +N+E  ++  N           E+       + L +N 
Sbjct: 81  ALQQEKEQLSSILSSMADGVVTLNQECEVVVINPPAEHFLQVWQEEK-----ELELSRNL 135

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
           P  +      ++  + +Q +E        +   + L   +            + D++E +
Sbjct: 136 PPELVELFHLVVESEQQQVIEINLQ----KGNYVVLMTPLYNQTKIRGAVAVLRDMTEER 191

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + +                + DF+A VSHE+RTP+  + G+SE I +            E
Sbjct: 192 RLE--------------KMRQDFIANVSHELRTPMVMLQGYSEAILDDIVQT--KEEINE 235

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           +   I      +  +VN+LLD++++ESG + LH   V +   V +     Q  A EK + 
Sbjct: 236 FVQIIYDESVRLGRLVNELLDLARMESGHVELHISEVDIHPFVEKIGRKFQGIAKEKNVR 295

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +   F N I +   D   ++Q+  N++ NAI  T +GG + +     +N  ++  V+D+G
Sbjct: 296 LTVDFRNPIEQHSFDPDRMEQVLTNLIDNAIRHTNAGGHVELIIDTKNNG-LMFEVQDSG 354

Query: 746 VGMTNYELEKAMKPFGQIPNS-------QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
            G+   ++      F +   +           G        +AK +V  + GK  I S  
Sbjct: 355 AGIPEEDIPFLFDRFYKADKARTRGKTGGTGLGL------AIAKNIVQGHNGKVSISSVV 408

Query: 799 AKGTLIEIIFP 809
            +GT+  +  P
Sbjct: 409 GEGTIFSVYLP 419


>gi|154251811|ref|YP_001412635.1| histidine kinase [Parvibaculum lavamentivorans DS-1]
 gi|154155761|gb|ABS62978.1| histidine kinase [Parvibaculum lavamentivorans DS-1]
          Length = 288

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 104/266 (39%), Positives = 157/266 (59%)

Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
           + YS  + ++   ++ +  L  AK  A+  S  KS+FLA +SHE+RTPL AIIGFSE I+
Sbjct: 16  AGYSTNLGELMSRQRSEVALRSAKIEADMASRTKSEFLANMSHELRTPLNAIIGFSEFIQ 75

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
           +       + +  EYA +I  +G  +L+I++D+LDI+KIESG  +L  EP  + E V   
Sbjct: 76  HIAASGKPSEKTGEYATHIAGAGRHLLNIISDILDIAKIESGTFSLATEPYDVRELVDAC 135

Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
           I L++    EK+ ++      ++P +  D R +KQ+ +N+LSNA  FT  GG+I++  T 
Sbjct: 136 IVLIEPRIREKKQVLEIKADPSLPEVPVDARRIKQVLINLLSNAHKFTGEGGRIVLVATQ 195

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
           T +  V + V DTG+GMT  ++  A+ PFGQ+  S     EGTGLGLP+A A+   + G+
Sbjct: 196 TPDGGVTIAVADTGIGMTKEQISHALTPFGQVQASYARGHEGTGLGLPIAAALTTLHGGE 255

Query: 792 FYIFSTPAKGTLIEIIFPLYDTSHPH 817
           F IFS P KGT +    P    + P 
Sbjct: 256 FQIFSEPGKGTTVFFTLPPAAPARPQ 281


>gi|298505027|gb|ADI83750.1| sensor histidine kinase [Geobacter sulfurreducens KN400]
          Length = 456

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 93/280 (33%), Positives = 156/280 (55%), Gaps = 12/280 (4%)

Query: 541 LRIIIKKLPFSSCYSLTMHD----ISEWKQEK-NKLSHAKKIAEKESSHKSDFLARVSHE 595
           +         S+     + D    + E  +E+ ++L  A+++AE  +  KS+FLA +SHE
Sbjct: 167 VLYTCAYALESATLHAMLRDNMQHLEERVRERTSELQAAREMAESANLAKSEFLATMSHE 226

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           +RTPL A+IGF++V+ ++ +G + +    E+  Y+ +S   +L ++ND+LD+SKIE+ +M
Sbjct: 227 LRTPLNAVIGFTDVLLSRIYGEVTD-IQAEFLGYVLQSSRHLLSLINDILDLSKIEADRM 285

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSN 714
            L    V + +  S ++ +V+  A + RI +    A  +P  I AD R +KQI  N+L+N
Sbjct: 286 ELEPSDVDIRQLASGSLVMVKERAQQHRIRLTEEVAPAVPPTITADERKLKQIVFNLLAN 345

Query: 715 AIHFTPSGGQIIISTTH----TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           A+ FTP GG + +S            +++ V+DTG+G+   +LE+   PF Q   S   R
Sbjct: 346 AVKFTPDGGSVTLSVGLPPAEECEGGIMIAVQDTGIGLAAGDLERIFDPFVQADGSATRR 405

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFP 809
            EGTGLGLPL + +V+ + G     S  P  G+   +I P
Sbjct: 406 YEGTGLGLPLTRKLVELHGGTIRAESPGPGLGSTFRVIIP 445


>gi|182678851|ref|YP_001832997.1| response regulator receiver sensor signal transduction histidine
           kinase [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182634734|gb|ACB95508.1| response regulator receiver sensor signal transduction histidine
           kinase [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 389

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 98/255 (38%), Positives = 145/255 (56%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E  +    L  AK+ AE  +  KS+FLA +SHE+RTPL AIIGFS +I  +  GPL N R
Sbjct: 130 EKSRMIEALRLAKEGAEAANQAKSNFLATISHELRTPLNAIIGFSNLILMELMGPLSNER 189

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
           Y EY   I+ SG  +L I+ND+LD++K E+G+  L    +   +A+     L+   A E 
Sbjct: 190 YREYLRDINASGEHLLSIINDILDLTKAEAGQTELFESVIHPRDAIIPVERLLMPKAREA 249

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
            + + ++   ++P + AD R  KQI LN+LSNA+ FTP GG I I    T   ++ + V 
Sbjct: 250 GLTLTSNITEHLPLLRADERKAKQIFLNLLSNAVKFTPPGGSIEIDAHLTHKGDLAIAVA 309

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG+G+    +++  +PF QI +S   R +GTGLGLPL K+ ++ + G  ++ S    GT
Sbjct: 310 DTGIGIAPEHIDRVCEPFVQIDSSLSRRHDGTGLGLPLVKSFMELHEGSLHLRSKSGIGT 369

Query: 803 LIEIIFPLYDTSHPH 817
              + FP      P 
Sbjct: 370 CAIVTFPAKRLVLPQ 384


>gi|168004942|ref|XP_001755170.1| sensory histidine protein kinase [Physcomitrella patens subsp.
           patens]
 gi|162693763|gb|EDQ80114.1| sensory histidine protein kinase [Physcomitrella patens subsp.
           patens]
          Length = 336

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 71/233 (30%), Positives = 124/233 (53%), Gaps = 8/233 (3%)

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
           E+ S  KS+FLA +SHEIRTP+  IIG + +               E+   + +S + +L
Sbjct: 1   EEASRAKSEFLANMSHEIRTPIHGIIGMASLALETDL----TDEQREHLETVAQSADCLL 56

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RI 697
            IVN +LD++KIE+G++ L     S+ + V+  I ++Q+ AN+K++ +      +IP  +
Sbjct: 57  HIVNAILDLAKIEAGRVELERVQFSVFDTVASTIKMLQVKANQKQLRVSWEVDPDIPAHL 116

Query: 698 LADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDTGVGMTNYELE 754
           + D   ++Q  +N++ NAI FT  G    Q        +   ++  V+DTG+G++  + +
Sbjct: 117 IGDAGRLQQCLINLVGNAIKFTQEGSLASQTETKVDRDNKVTLLFSVQDTGIGISKEKQK 176

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           +  K F Q  +S      GTGLGL + + +V    G+ ++ S P KG+    I
Sbjct: 177 EVFKAFSQADSSTTRLYGGTGLGLSIVERLVQMMGGRIWLESEPGKGSTFYFI 229


>gi|300897714|ref|ZP_07116111.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           MS 198-1]
 gi|300358554|gb|EFJ74424.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           MS 198-1]
          Length = 593

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 82/371 (22%), Positives = 170/371 (45%), Gaps = 28/371 (7%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            + +         I+E  +DG+  I+R+G + + N A   + GY   +++ +P+++    
Sbjct: 239 AQALRETRTLNDLIIENAADGVIAIDRQGDVTTMNPAAEVITGYQRHELVGQPYSMLF-- 296

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMH 559
              +     + + L                ++ + + L +   ++  +        +   
Sbjct: 297 -DNTQFYSPVLDTLEHGTEHV-ALEISFPGRD-RTIELSVTTSRIHNTHGEMIGALVIFS 353

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           D++  K+ + +++ A+++A        + +A V+HE+R PLTAI G+ ++++ Q    + 
Sbjct: 354 DLTARKETQRRMAQAERLAT-----LGELMAGVAHEVRNPLTAIRGYVQILRQQTSDLI- 407

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
              + EY + + +  + +  ++  LL+ S+    +    ++ VSL+  V E + LVQ   
Sbjct: 408 ---HQEYLSVVLKEIDSINKVIQQLLEFSRPRHSQ----WQQVSLNALVEETLVLVQTAG 460

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
            + R+   +   N +  I AD   +KQ+ LNIL NA+    + G+I I T   S+ +  +
Sbjct: 461 VQARVDFISELDNELNPINADRELLKQVLLNILINAVQAISARGKIRIQTWQYSDSQQAI 520

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            + D G G+     +K   PF     S      GTGLGL L++ +++A+ G   + S P 
Sbjct: 521 SIEDNGCGIDLSLQKKIFDPFFTTKAS------GTGLGLALSQRIINAHQGDIRVASLPG 574

Query: 800 KGTLIEIIFPL 810
            G    +I P+
Sbjct: 575 YGATFTLILPI 585



 Score = 40.4 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/117 (10%), Positives = 37/117 (31%), Gaps = 6/117 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G +  ++       G    +++G     +    +    + + D L+          
Sbjct: 263 IDRQGDVTTMNPAAEVITGYQRHELVGQPYSMLF--DNTQFYSPVLDTLEHGTEHVALEI 320

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
            +P     + + +  +   I++ + E  G     I        + +    + ++  +
Sbjct: 321 SFPGRDRTIELSVTTS--RIHNTHGEMIGA--LVIFSDLTARKETQRRMAQAERLAT 373


>gi|163846813|ref|YP_001634857.1| histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|222524634|ref|YP_002569105.1| PAS/PAC sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl]
 gi|163668102|gb|ABY34468.1| Histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|222448513|gb|ACM52779.1| PAS/PAC sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl]
          Length = 537

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 92/383 (24%), Positives = 162/383 (42%), Gaps = 33/383 (8%)

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
           +   ++E       +++ +  I S    +  L G      +       L +         
Sbjct: 6   EQRVLIET-GSAYVVVDPDLRIQSA-GGMLALLGGKPP--IGGHLLDLLPELF--GNEAA 59

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEK 568
           L EIL  +  +    +      +   L + ++   L             + D ++    +
Sbjct: 60  LDEILHGERDRLYLPLINRQMPDGSTLYIDLLTIPLTDKDGRITGLIQIVTDTTQRSVIE 119

Query: 569 NKLSHAKKIAE---------------------KESSHKSDFLARVSHEIRTPLTAIIGFS 607
              S  +   +                     K +  K +FLA +SHEIRTPLTAI+G  
Sbjct: 120 QLRSQQRNELQLLKDRLQRQNVELARINASLLKTTKIKDEFLASMSHEIRTPLTAILGMV 179

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
           ++++ Q  GPL +   +   + I +    +L ++ND LDI+K+E+G+M L   PVS+ + 
Sbjct: 180 DLLRAQLVGPLSDE-QMGAIDGIKKGSQHLLSLINDYLDIAKVEAGRMELDLTPVSVQDV 238

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727
                 LV        + +     + +  ILAD R ++QI +N+LSNAI FTP+GG++ +
Sbjct: 239 CMSLRPLVADLIRRANLSLIFDIDSAVQVILADARRLRQILINLLSNAIKFTPAGGKVGL 298

Query: 728 STTHT-SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
                     V   V DTG+G++  +  +  +PF QI + +Q    G+GLGL L   +V 
Sbjct: 299 EVRGEPERGAVRFTVWDTGIGISAEDAVRLFEPFQQIESERQKEVTGSGLGLALVAKLVR 358

Query: 787 ANMGKFYIFSTPAKGTLIEIIFP 809
            + G   + S    G+   +  P
Sbjct: 359 LHGGSVRVESEVGVGSRFHVTLP 381



 Score = 37.7 bits (86), Expect = 7.7,   Method: Composition-based stats.
 Identities = 22/241 (9%), Positives = 64/241 (26%), Gaps = 11/241 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D    ++     L    G      IG  L D+   L  +    + ++L  +        
Sbjct: 20  VDPDLRIQSAGGMLALLGGKPP---IGGHLLDLLPELFGN-EAALDEILHGERDRLYLPL 75

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           +         + IDL  +P+  ++   +G          R   +     +R + +     
Sbjct: 76  INRQMPDGSTLYIDLLTIPLTDKDGRITGLIQIVTDTTQRSVIEQLRSQQRNELQLLK-D 134

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
            +++ +  + +    +          ++K++  +   +              LL ++   
Sbjct: 135 RLQRQNVELARINASLLK------TTKIKDEFLASMSHEIRTPLTAILGMVDLLRAQLVG 188

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
               E    I+  +   +     + +    +                 +        V  
Sbjct: 189 PLSDEQMGAIDGIKKGSQHLLSLINDYLDIAKVEAGRMELDLTPVSVQDVCMSLRPLVAD 248

Query: 329 C 329
            
Sbjct: 249 L 249


>gi|324006599|gb|EGB75818.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           MS 57-2]
          Length = 593

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 83/371 (22%), Positives = 170/371 (45%), Gaps = 28/371 (7%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            + +         I+E  +DG+  I+R+G + + N A   + GY   +++ +P+++    
Sbjct: 239 AQALRETRTLNDLIIENAADGVIAIDRQGDVTTMNPAAEVITGYQRHELVGQPYSMLF-- 296

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMH 559
              +     + + L                ++ + + L +   ++  +        +   
Sbjct: 297 -DNTQFYSPVLDTLEHGTEHV-ALEISFPGRD-RTIELSVTTSRIHNTHGEMIGALVIFS 353

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           D++  K+ + +++ A+++A        + +A V+HE+R PLTAI G+ +++  Q   P+ 
Sbjct: 354 DLTARKETQRRMAQAERLAT-----LGELMAGVAHEVRNPLTAIRGYVQILHQQTRDPI- 407

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
              + EY + + +  + +  ++  LL+ S+    +    ++ VSL+  V E + LVQ   
Sbjct: 408 ---HQEYLSVVLKEIDSINKVIQQLLEFSRPRHSQ----WQQVSLNALVEETLVLVQTAG 460

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
            + R+   +   N +  I AD   +KQ+ LNIL NA+    + G+I I T   S+ +  +
Sbjct: 461 VQARVDFISELDNELSPINADRELLKQVLLNILINAVQAISARGKIRIRTWQYSDSQQAI 520

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            + D G G+     +K   PF     S      GTGLGL L++ +++A+ G   + S P 
Sbjct: 521 SIEDNGSGIDLSLQKKIFDPFFTTKAS------GTGLGLALSQRIINAHQGDIRVASLPG 574

Query: 800 KGTLIEIIFPL 810
            G    +I P+
Sbjct: 575 YGATFTLILPI 585



 Score = 40.8 bits (94), Expect = 0.94,   Method: Composition-based stats.
 Identities = 23/228 (10%), Positives = 59/228 (25%), Gaps = 7/228 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G +  ++       G    +++G     +    +    + + D L+          
Sbjct: 263 IDRQGDVTTMNPAAEVITGYQRHELVGQPYSMLF--DNTQFYSPVLDTLEHGTEHVALEI 320

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
            +P     + + +  +   I++ + E  G     I        + +    + ++  +   
Sbjct: 321 SFPGRDRTIELSVTTS--RIHNTHGEMIGA--LVIFSDLTARKETQRRMAQAERLATLGE 376

Query: 209 EIKK-GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
            +    H             Q      R       L+      D + K  +  L  S   
Sbjct: 377 LMAGVAHEVRNPLTAIRGYVQILHQQTRDPIHQEYLSVVLKEIDSINKVIQQLLEFSRPR 436

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
               Q+      + +         +Q       E  +  +  +     
Sbjct: 437 HSQWQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSPINADREL 484


>gi|170765863|ref|ZP_02900674.1| sensor histidine kinase/response regulator BarA [Escherichia
           albertii TW07627]
 gi|170125009|gb|EDS93940.1| sensor histidine kinase/response regulator BarA [Escherichia
           albertii TW07627]
          Length = 918

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 85/333 (25%), Positives = 153/333 (45%), Gaps = 17/333 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +FG+ +   +  P    +               L   +   +             +++ +
Sbjct: 193 IFGWRLMRDVTGPIRNMVNTVDR-----IRRGQLDSRVEGFMLGELDMLKNGINSMAMSL 247

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 248 AAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTP 307

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+ +       P       ++ N I+RS N +L I+ND+LD SK+E+GK+ L  
Sbjct: 308 LNGVIGFTRLTLKTELTPT----QRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILES 363

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P  L   + E ++L+   +++K + +  +  +++P  ++ D   ++QI  N++ NAI F
Sbjct: 364 IPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKF 423

Query: 719 TPSGGQ-IIISTTHTSNEEVILRV--RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T +G   I++     SN +V + V  RDTG+G+   +  +  + F Q   S   R  GTG
Sbjct: 424 TENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTG 483

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           LGL + + +V+   G     S P +G+      
Sbjct: 484 LGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516


>gi|198245109|ref|YP_002216932.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|205353904|ref|YP_002227705.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|197939625|gb|ACH76958.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|205273685|emb|CAR38675.1| sensor protein [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|326624696|gb|EGE31041.1| signal transduction histidine-protein kinase BarA [Salmonella
           enterica subsp. enterica serovar Dublin str. 3246]
 gi|326629016|gb|EGE35359.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 918

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 87/333 (26%), Positives = 154/333 (46%), Gaps = 17/333 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +FG+ +   +  P    +               L   +   +             +++ +
Sbjct: 193 IFGWRLMRDVTGPIRNMVNTVDR-----IRRGQLDSRVEGFMLGELDMLKNGINSMAMSL 247

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 248 AAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTP 307

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+ +          NP   ++ N I+RS N +L I+ND+LD SK+E+GK+ L  
Sbjct: 308 LNGVIGFTRLTLKTEL----NPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILES 363

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P  L   + E ++L+   +++K + +  +  N++P  ++ D   ++Q+  N++ NAI F
Sbjct: 364 IPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKF 423

Query: 719 TPSGGQ-IIISTTHTSNEEVILRV--RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T SG   I++     SN +V + V  RDTG+G+   +  +  + F Q   S   R  GTG
Sbjct: 424 TESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTG 483

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           LGL + + +V+   G     S P +G+      
Sbjct: 484 LGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516


>gi|320182398|gb|EFW57295.1| hybrid sensory histidine kinase BarA [Shigella boydii ATCC 9905]
          Length = 918

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 85/333 (25%), Positives = 153/333 (45%), Gaps = 17/333 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +FG+ +   +  P    +               L   +   +             +++ +
Sbjct: 193 IFGWRLMRDVTGPIRNMVNTVDR-----IRRGQLDSRVEGFMLGELDMLKNGINSMAMSL 247

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 248 AAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTP 307

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+ +       P       ++ N I+RS N +L I+ND+LD SK+E+GK+ L  
Sbjct: 308 LNGVIGFTRLTLKTELTPT----QRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILES 363

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P  L   + E ++L+   +++K + +  +  +++P  ++ D   ++QI  N++ NAI F
Sbjct: 364 IPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKF 423

Query: 719 TPSGGQ-IIISTTHTSNEEVILRV--RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T +G   I++     SN +V + V  RDTG+G+   +  +  + F Q   S   R  GTG
Sbjct: 424 TENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTG 483

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           LGL + + +V+   G     S P +G+      
Sbjct: 484 LGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516


>gi|320173230|gb|EFW48440.1| hybrid sensory histidine kinase BarA [Shigella dysenteriae CDC
           74-1112]
          Length = 918

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 85/333 (25%), Positives = 153/333 (45%), Gaps = 17/333 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +FG+ +   +  P    +               L   +   +             +++ +
Sbjct: 193 IFGWRLMRDVTGPIRNMVNTVDR-----IRRGQLDSRVEGFMLGELDMLKNGINSMAMSL 247

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 248 AAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTP 307

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+ +       P       ++ N I+RS N +L I+ND+LD SK+E+GK+ L  
Sbjct: 308 LNGVIGFTRLTLKTELTPT----QRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILES 363

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P  L   + E ++L+   +++K + +  +  +++P  ++ D   ++QI  N++ NAI F
Sbjct: 364 IPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKF 423

Query: 719 TPSGGQ-IIISTTHTSNEEVILRV--RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T +G   I++     SN +V + V  RDTG+G+   +  +  + F Q   S   R  GTG
Sbjct: 424 TENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTG 483

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           LGL + + +V+   G     S P +G+      
Sbjct: 484 LGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516


>gi|238760008|ref|ZP_04621160.1| Phosphate regulon sensor protein phoR [Yersinia aldovae ATCC 35236]
 gi|238701761|gb|EEP94326.1| Phosphate regulon sensor protein phoR [Yersinia aldovae ATCC 35236]
          Length = 438

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 71/359 (19%), Positives = 134/359 (37%), Gaps = 37/359 (10%)

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
           +  S  E+  D + I   EG I   N     L G+   +   +     L     S     
Sbjct: 99  RFRSGAESLPDAVVITTIEGNIFWCNGLAQHLLGFRWPEDNGQHILNLLRYPEFSQYL-- 156

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572
                    +Q   +           +  R++           +   D+++ +Q +    
Sbjct: 157 --------QQQEFARPLTLQLNNGYFVEFRVMPY---TEGQLLMVARDVTQMRQLEG--- 202

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF-GPLGNPRYIEYANYID 631
                       + +F A VSHE+RTPLT + G+ E++ +Q   GPL +    +    + 
Sbjct: 203 -----------ARRNFFANVSHELRTPLTVLQGYLEMMHDQALTGPLRD----KALGTMQ 247

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN-EKRILIRTSF 690
                +  +V  LL +S+IE+       E V +   +      VQ  +N    I  R + 
Sbjct: 248 EQTKRMDGLVKQLLTLSRIEAAPNVDMNERVDIPLMLKVLQHEVQALSNGRHEITFRVN- 306

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
                R+  +   ++    N++ NA++ TP G +I +    T       +V D G G++ 
Sbjct: 307 --EQLRVFGNEDQLRSAVSNLVYNAVNHTPEGTKIEVCWQQTPQG-AQFQVSDNGPGISP 363

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             L +  + F ++  ++  +  G+GLGL + K  +  +  +  + S    GT      P
Sbjct: 364 EHLPRLTERFYRVDKARSRQTGGSGLGLAIVKHALSHHDARLDVISEIGLGTRFIFTLP 422


>gi|85085099|ref|XP_957446.1| hypothetical protein NCU07221 [Neurospora crassa OR74A]
 gi|28918537|gb|EAA28210.1| hypothetical protein NCU07221 [Neurospora crassa OR74A]
          Length = 925

 Score =  287 bits (735), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 105/553 (18%), Positives = 206/553 (37%), Gaps = 30/553 (5%)

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
           +         +  +         T Q++  ++     H       A  D          D
Sbjct: 67  ASASTPSTQAMEEDHAWSVATRTTTQSSIDDTVTLQRHVPPTHPFAAPDMSL-----IFD 121

Query: 328 KCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
             P+P  + S    +   +  F         D I             ++ +  A K  ++
Sbjct: 122 FSPVPLLLLSSSCCITRVSKRFCQDWHVTEEDCIGK---FLLPFLESQIRETGASKSRLI 178

Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
             +    +AA +   +     +++                               ++  +
Sbjct: 179 AEAVDDAVAARSERTSKAITVKSAFTCRARVIPIFRDAELVSIYLEWHERPSSEVLDNEQ 238

Query: 447 ME---IEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
           ++           +++AT D  I +++ +G I + N     L GY  E+I+ K F++F  
Sbjct: 239 VQPGLSTDEAFRILVQATKDYAIFLLDTKGHIATWNTGAQLLKGYTREEIIGKHFSIFYG 298

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMH 559
           +    +    +   + L   +  E       K+       ++I  +  +     +     
Sbjct: 299 KEDLDIKKPDMELDICLREGRV-EDEGWRYKKDGTRFWANVVITAVYKNGVHVGFGKVTR 357

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           D++E K  +++L       E+    KSDFLA +SHEIRTP+  ++    ++ +       
Sbjct: 358 DLTERKASESRLI---AAYEESEKLKSDFLANMSHEIRTPMHGMLSACALLLDSPL---- 410

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
             R  +  N +D SG ++L ++ND+LD SK+ SG  ++  + V +   ++  +  VQ   
Sbjct: 411 TERQRDIVNIMDESGQILLQVINDILDYSKLASGSFSVSSDVVGVASIITSVVRAVQTTL 470

Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEV 737
               +      A N+P+ +  D    +QI  NI+ NA  FT  G  ++  S     N+  
Sbjct: 471 PPA-VHFELFLAPNLPKSVQGDPLRYRQIVQNIVGNAAKFTDKGSIRVKASVDSEDNDSY 529

Query: 738 IL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            +   V DTG+G+          PF Q   +   R +GTGLGL +AK++ +   G+    
Sbjct: 530 TILTEVIDTGIGIRESASASLFTPFSQFDLTTTKRYKGTGLGLSIAKSLAELMGGRIGYR 589

Query: 796 STPAK-GTLIEII 807
             P + G++    
Sbjct: 590 PNPERHGSVFWFT 602



 Score = 41.6 bits (96), Expect = 0.56,   Method: Composition-based stats.
 Identities = 17/136 (12%), Positives = 40/136 (29%), Gaps = 9/136 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL--LKRQNTW 143
            + +D  G++   +       G    ++IG           +D      +L    R+   
Sbjct: 261 IFLLDTKGHIATWNTGAQLLKGYTREEIIGKHFSIFYGKEDLDIKKPDMELDICLREGRV 320

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFG-IVHVNRVDNDPRALGKRLDK 202
             +   +  +GT  +  + + A+     +       GFG +           +      +
Sbjct: 321 EDEGWRYKKDGTRFWANVVITAVYKNGVH------VGFGKVTRDLTERKASESRLIAAYE 374

Query: 203 KFSHLHEIKKGHSSVE 218
           +   L      + S E
Sbjct: 375 ESEKLKSDFLANMSHE 390


>gi|219851636|ref|YP_002466068.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanosphaerula palustris E1-9c]
 gi|219545895|gb|ACL16345.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanosphaerula palustris E1-9c]
          Length = 640

 Score =  287 bits (734), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 104/614 (16%), Positives = 216/614 (35%), Gaps = 29/614 (4%)

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
           +    + +I +  S    E+  +            +  +  L++       +   E    
Sbjct: 39  RYDLEVIDISRHPSLSRDEQIVVTPTLIRKGPAPERRLIGDLSDTRVVLRGLGLPE--GG 96

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
           L +E +      +   I L +  ++     +   + +    +   +          G + 
Sbjct: 97  LQNEPNDSGSSANPQVIKLCERLRETGVDRMDIWTGQVDGIVVPTSDEDRLFINPGGASP 156

Query: 322 TPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
               V+        +   G + Y N  F  + +   ++ I  +   S +     L     
Sbjct: 157 YWTFVETMNEGAVVIDRAGTILYCNRRFAAIIE-ARMEMISGSFFDSWVCSHDHLLFEAL 215

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
                  +S       + R   +       + ++  PF         + +  I   D+ T
Sbjct: 216 SVAGADRQSSGDLQMVNTRGRLVP------VHLSLSPF-----TGGGVSEISIVVTDLTT 264

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           R +   +        SILE  +D I +IN E +I+  N A  ++ G              
Sbjct: 265 RKHNCALLRSEHLAHSILEQAADPIVVINAEKVIIRANTAAVEMAGTNPLLAQFDSVFPL 324

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL----PFSSCYSL 556
            +      +    + I S    Q      L    +  L SL I    +      S     
Sbjct: 325 FQVIGDEEIPFSPSRISSAGK-QLQGMEVLFRRTDRSLFSLLISAAPIIGEFGESPGCVA 383

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            M DI+  KQ + +L          +     F    SH+++ PL  +  + ++++ +   
Sbjct: 384 VMTDITAQKQVEGELRRTLDDLAHSNQDLQQFAYIASHDLQEPLRMVASYLQLLERKYRD 443

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
            L +    E+  +     N +   +NDLL  S++ S    L   PVS +EA++ A+S + 
Sbjct: 444 RLDSDAQ-EFIGFAVEGANRMQQQINDLLAYSRVTSRGQPLK--PVSAEEALASALSHLA 500

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN-E 735
           L   E    +     + +P + ADL  + Q+  N+L NA+ F       +I  +      
Sbjct: 501 LKIEETGATVT---HDPLPMVRADLPQLVQVFSNLLDNALTFLRPQVAPVIHLSVEDQAG 557

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            V+  + D G+G+     ++  + F ++ +  +    GTG+GL + + +++ + G+ ++ 
Sbjct: 558 WVVFSLHDNGIGIDPEFYQRIFQMFQRLHS--RAEYPGTGIGLAICQRIIERHHGRIWVT 615

Query: 796 STPAKGTLIEIIFP 809
           S P  G+      P
Sbjct: 616 SVPGSGSTFSFTIP 629



 Score = 46.6 bits (109), Expect = 0.017,   Method: Composition-based stats.
 Identities = 39/390 (10%), Positives = 93/390 (23%), Gaps = 41/390 (10%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G +   +      I      + G    D     H         +        G   
Sbjct: 171 IDRAGTILYCNRRFAAIIEARMEMISG-SFFDSWVCSHDHLLFEALSVAGADRQSSGDLQ 229

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFG----IVHVNRVDNDPRALGKRLDKKF 204
           +    G    VP+ L+  P       F+G  G      +V          AL +  +   
Sbjct: 230 MVNTRGRL--VPVHLSLSP-------FTG-GGVSEISIVVTDLTTRKHNCALLR-SEHLA 278

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
             + E       V   +  I    +    +   N + +  +       V+  E+ P   S
Sbjct: 279 HSILEQAADPIVVINAEKVIIRANTAAVEMAGTNPLLAQFDSVFPLFQVIGDEEIPFSPS 338

Query: 265 EESS-----LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
             SS        +  F   + + ++       +     ES   ++     +     +   
Sbjct: 339 RISSAGKQLQGMEVLFRRTDRSLFSLLISAAPIIGEFGESPGCVAVMTDITAQKQVEGEL 398

Query: 320 NLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
             T + +                     F  +  +   + + +      LL+       +
Sbjct: 399 RRTLDDLAHSNQDL------------QQFAYIASHDLQEPLRMVASYLQLLERKYRDRLD 446

Query: 380 AIKPVML------YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
           +     +          +  I        +    +    ++      +      +     
Sbjct: 447 SDAQEFIGFAVEGANRMQQQINDLLAYSRVTSRGQPLKPVSAEEALASALSHLALKIEET 506

Query: 434 EPEDVDTRI--NKRKMEIEVMQLCSILEAT 461
                   +   +  +   V    ++L+  
Sbjct: 507 GATVTHDPLPMVRADLPQLVQVFSNLLDNA 536


>gi|56461210|ref|YP_156491.1| phosphate regulon sensor histidine kinase [Idiomarina loihiensis
           L2TR]
 gi|56180220|gb|AAV82942.1| Phosphate regulon sensor histidine kinase (contains PAS domain)
           [Idiomarina loihiensis L2TR]
          Length = 431

 Score =  287 bits (734), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 71/401 (17%), Positives = 157/401 (39%), Gaps = 30/401 (7%)

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468
             L  +      +     +   +GI      ++  ++ +   + +     EA  D   + 
Sbjct: 55  KWLWQSRTLMPPSAPGSWSYIYDGIYRSQRRSQKRRKALARLLRRFREAAEALPDAAIVF 114

Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528
             +G +L +N+     FG    D   +  +  +         +              ++ 
Sbjct: 115 RADGALLWSNKLAQFYFGLRWPDDAGQRLSNLIRHPEFYAYLNA----------GNFDEE 164

Query: 529 TLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
               +   + L + I I        + L   D+++ K+ +              + + +F
Sbjct: 165 LTIPSPIRESLDIEIRIMPYSEDQ-FLLVARDVTQVKRLE--------------NLRREF 209

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
           +A VSHE++TPLT + G+ E++   +  P       +    ++     + ++V+ LL +S
Sbjct: 210 VANVSHELKTPLTVLQGYLEMMDEPQQTP--PAMLKKAVENMNAQSTRMANLVDQLLTLS 267

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIA 708
           ++E+   ++    V +   + +  S  +     K+  I    A    RI      ++   
Sbjct: 268 RMETPSNDVFDHEVDMPALLEQLESEAKRLNEVKQHKIEFDVAP--VRIYGKENLLRSAM 325

Query: 709 LNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
            N+++NAI++TP GG+I ++    +   V   V+D G G+    L +  + F ++ + + 
Sbjct: 326 QNLITNAINYTPDGGEIKVTWKTVAGG-VEFSVKDNGKGIAAEHLPRLTERFYRVEDDRN 384

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
               GTGLGL + K  ++ +  +  I S+  KG+      P
Sbjct: 385 SASGGTGLGLSIVKHAIEHHNSQLDINSSLEKGSRFSFRIP 425


>gi|307299069|ref|ZP_07578871.1| multi-sensor hybrid histidine kinase [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306915494|gb|EFN45879.1| multi-sensor hybrid histidine kinase [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 935

 Score =  287 bits (734), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 79/249 (31%), Positives = 125/249 (50%), Gaps = 9/249 (3%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
             K     L    K A++ S  KS+FLA +SHE+RTP+ AI+GF+E++ N       N  
Sbjct: 314 RLKNSNEMLRKVSKEAQQASKMKSEFLANMSHEMRTPMNAILGFAELLMNDE----TNLE 369

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
            ++Y   I RSG  +L ++ND+LD+SKIE+ + +L   P S  + V E        A  K
Sbjct: 370 KMKYLKTIYRSGEHLLSLINDVLDLSKIEAARFDLIISPYSPAKLVKEITETYLPMAYSK 429

Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-SNEEVILR 740
            +    S    +P  +  D   V+Q+  N++SN + FT  G    +S         +I  
Sbjct: 430 GLHFANSITERVPEYVDGDEFRVRQVLTNLVSNGLKFTDKG---YVSVLLDYDGHHLIYT 486

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V+DTG G++  E++K  +PF Q   +   +  GTGLGL + K +V+   G     S   +
Sbjct: 487 VQDTGSGVSREEIDKIFEPFIQADGTMSRKFGGTGLGLTITKKIVELMGGSIRFESKVGE 546

Query: 801 GTLIEIIFP 809
           G+ + +  P
Sbjct: 547 GSKVTVRIP 555


>gi|291529939|emb|CBK95524.1| PAS domain S-box [Eubacterium siraeum 70/3]
          Length = 581

 Score =  287 bits (734), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 84/367 (22%), Positives = 152/367 (41%), Gaps = 26/367 (7%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           + +E E  +   ILE+  DG+ + + +  ++S NRA  KL G   E           E  
Sbjct: 236 KTLENEREKERFILESLQDGVILYDNDLSVISINRAGLKLLGASEESGA----LTVPELA 291

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564
               +     +  + D   T+E    G     ++  +              + + D+++ 
Sbjct: 292 RKPEIISGAEKAANEDRTVTIESTVDGRILLVQVFPVSKSGIDAMHGG--LMVIRDVTDK 349

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           +  +                K+DF A   HE++TPLTAI GF+E +      P     Y 
Sbjct: 350 RMSE--------------QLKADFFANAGHELKTPLTAISGFAE-LLENGLVPKDKKDY- 393

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
            Y   I      +  I++D+L+IS +E+           L E  +     ++  A  K +
Sbjct: 394 -YIGKILTEAKRMSTIISDILEISSLENKTTAEEVTDCKLSEICTAVKECLEPAACAKNV 452

Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744
            I    + +   + A  + + ++  NI+SNAI +   GG++ I+  H   E   + VRD 
Sbjct: 453 TI--ELSGDSFTVRAAYKHIYELVENIVSNAIKYNKDGGRVEITL-HNVGETGCIYVRDN 509

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G+    L +  + F ++   +  +   TGLGL + K +V+   G   + S   KGTL+
Sbjct: 510 GIGIPKESLNRVFERFYRVDKGRSTKEGSTGLGLSIVKHIVNCYGGTVTLDSELGKGTLV 569

Query: 805 EIIFPLY 811
            +  P+ 
Sbjct: 570 CVRLPIA 576


>gi|53712464|ref|YP_098456.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
 gi|52215329|dbj|BAD47922.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
          Length = 637

 Score =  287 bits (734), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 110/487 (22%), Positives = 181/487 (37%), Gaps = 20/487 (4%)

Query: 325 TVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
            +    I F+ Y    G   +    +  +   K    I     ++         D  + +
Sbjct: 29  VLAGHQIAFWEYDIPTGECNF-TDEYFHILGLKEAGIIFR--DINDFYRFAHPEDVISYQ 85

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
                  +     +   +  +    E           K N+   +               
Sbjct: 86  TTFARMLESETKISQIVVRCVGRQGETIWLEDNFIAYKKNKENGSDKIIAYTANITSRCE 145

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            + ++     +   I+EA  + I I +    I     A      +PVE +          
Sbjct: 146 KEVQIRQLEERNRKIIEALPEFIFIFDDNFFITDVLMAPDTELLHPVEVLTGADGRSIYS 205

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
                +    + E L     + +E               RI        +     +HDI 
Sbjct: 206 SEVSDLFISSIHECLKSGKLKEIEYPVDV-EAGRHFFQARIAPF---EGNKVLALIHDIG 261

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  +   +L  AK+ AE+    KS FLA +SHEIRTPL AI+GFSE+I            
Sbjct: 262 DRMRRSQELLEAKQRAEEADRMKSVFLANMSHEIRTPLNAIVGFSEIIA----LTEDEKE 317

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             EY   I ++ NL+L ++ND+LD+S+IESGK  +H +   +   V E   + +L   +K
Sbjct: 318 KEEYLGIIQQNSNLLLQLINDILDLSRIESGKSEMHCQLTEMSGLVDEVDKVHRLKM-KK 376

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
            + +     +    IL D   V Q+  N LSNAI  T  G  I           V L V 
Sbjct: 377 GVKLNVIRPSEEIWILTDRNRVTQVLFNFLSNAIKNTIEGS-ITFGLVKEEE-WVKLYVT 434

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG G++  +L      F ++        +GTGLGLP+ K++V+   G+  + S   +G+
Sbjct: 435 DTGCGISKEKLPLIFTRFEKL----NDFVQGTGLGLPICKSIVERLGGRIEVESELGQGS 490

Query: 803 LIEIIFP 809
              +  P
Sbjct: 491 TFILYLP 497


>gi|332087561|gb|EGI92689.1| signal transduction histidine-protein kinase barA [Shigella boydii
           5216-82]
          Length = 918

 Score =  287 bits (734), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 85/333 (25%), Positives = 153/333 (45%), Gaps = 17/333 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +FG+ +   +  P    +               L   +   +             +++ +
Sbjct: 193 IFGWRLMRDVTGPIRNMVNTVDR-----IRRGQLDSRVEGFMLGELDMLKNGINSMAMSL 247

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 248 AAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTP 307

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+ +       P       ++ N I+RS N +L I+ND+LD SK+E+GK+ L  
Sbjct: 308 LNGVIGFTRLTLKTELTPT----QRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILES 363

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P  L   + E ++L+   +++K + +  +  +++P  ++ D   ++QI  N++ NAI F
Sbjct: 364 IPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKF 423

Query: 719 TPSGGQ-IIISTTHTSNEEVILRV--RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T +G   I++     SN +V + V  RDTG+G+   +  +  + F Q   S   R  GTG
Sbjct: 424 TENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTG 483

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           LGL + + +V+   G     S P +G+      
Sbjct: 484 LGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516


>gi|323966764|gb|EGB62195.1| hsp90-like protein [Escherichia coli M863]
 gi|323978603|gb|EGB73685.1| hsp90-like protein [Escherichia coli TW10509]
 gi|327251524|gb|EGE63210.1| signal transduction histidine-protein kinase barA [Escherichia coli
           STEC_7v]
          Length = 918

 Score =  287 bits (734), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 85/333 (25%), Positives = 153/333 (45%), Gaps = 17/333 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +FG+ +   +  P    +               L   +   +             +++ +
Sbjct: 193 IFGWRLMRDVTGPIRNMVNTVDR-----IRRGQLDSRVEGFMLGELDMLKNGINSMAMSL 247

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 248 AAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTP 307

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+ +       P       ++ N I+RS N +L I+ND+LD SK+E+GK+ L  
Sbjct: 308 LNGVIGFTRLTLKTELTPT----QRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILES 363

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P  L   + E ++L+   +++K + +  +  +++P  ++ D   ++QI  N++ NAI F
Sbjct: 364 IPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKF 423

Query: 719 TPSGGQ-IIISTTHTSNEEVILRV--RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T +G   I++     SN +V + V  RDTG+G+   +  +  + F Q   S   R  GTG
Sbjct: 424 TENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTG 483

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           LGL + + +V+   G     S P +G+      
Sbjct: 484 LGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516


>gi|312964948|ref|ZP_07779188.1| signal transduction histidine-protein kinase barA [Escherichia coli
           2362-75]
 gi|312290504|gb|EFR18384.1| signal transduction histidine-protein kinase barA [Escherichia coli
           2362-75]
          Length = 918

 Score =  287 bits (734), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 85/333 (25%), Positives = 153/333 (45%), Gaps = 17/333 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +FG+ +   +  P    +               L   +   +             +++ +
Sbjct: 193 IFGWRLMRDVTGPIRNMVNTVDR-----IRRGQLDSRVEGFMLGELDMLKNGINSMAMSL 247

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 248 AAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTP 307

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+ +       P       ++ N I+RS N +L I+ND+LD SK+E+GK+ L  
Sbjct: 308 LNGVIGFTRLTLKTELTPT----QRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILES 363

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P  L   + E ++L+   +++K + +  +  +++P  ++ D   ++QI  N++ NAI F
Sbjct: 364 IPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKF 423

Query: 719 TPSGGQ-IIISTTHTSNEEVILRV--RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T +G   I++     SN +V + V  RDTG+G+   +  +  + F Q   S   R  GTG
Sbjct: 424 TENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTG 483

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           LGL + + +V+   G     S P +G+      
Sbjct: 484 LGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516


>gi|331654269|ref|ZP_08355269.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           M718]
 gi|331047651|gb|EGI19728.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           M718]
          Length = 918

 Score =  287 bits (734), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 85/333 (25%), Positives = 153/333 (45%), Gaps = 17/333 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +FG+ +   +  P    +               L   +   +             +++ +
Sbjct: 193 IFGWRLMRDVTGPIRNMVNTVDR-----IRRGQLDSRVEGFMLGELDMLKNGINSMAMSL 247

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 248 AAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTP 307

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+ +       P       ++ N I+RS N +L I+ND+LD SK+E+GK+ L  
Sbjct: 308 LNGVIGFTRLTLKTELTPT----QRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILES 363

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P  L   + E ++L+   +++K + +  +  +++P  ++ D   ++QI  N++ NAI F
Sbjct: 364 IPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKF 423

Query: 719 TPSGGQ-IIISTTHTSNEEVILRV--RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T +G   I++     SN +V + V  RDTG+G+   +  +  + F Q   S   R  GTG
Sbjct: 424 TENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTG 483

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           LGL + + +V+   G     S P +G+      
Sbjct: 484 LGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516


>gi|301645250|ref|ZP_07245202.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 146-1]
 gi|307139472|ref|ZP_07498828.1| hybrid sensory histidine kinase BarA [Escherichia coli H736]
 gi|331643471|ref|ZP_08344602.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           H736]
 gi|301076453|gb|EFK91259.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 146-1]
 gi|331036942|gb|EGI09166.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           H736]
          Length = 918

 Score =  287 bits (734), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 85/333 (25%), Positives = 153/333 (45%), Gaps = 17/333 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +FG+ +   +  P    +               L   +   +             +++ +
Sbjct: 193 IFGWRLMRDVTGPIRNMVNTVDR-----IRRGQLDSRVEGFMLGELDMLKNGINAMAMSL 247

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 248 AAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTP 307

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+ +       P       ++ N I+RS N +L I+ND+LD SK+E+GK+ L  
Sbjct: 308 LNGVIGFTRLTLKTELTPT----QRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILES 363

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P  L   + E ++L+   +++K + +  +  +++P  ++ D   ++QI  N++ NAI F
Sbjct: 364 IPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKF 423

Query: 719 TPSGGQ-IIISTTHTSNEEVILRV--RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T +G   I++     SN +V + V  RDTG+G+   +  +  + F Q   S   R  GTG
Sbjct: 424 TENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTG 483

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           LGL + + +V+   G     S P +G+      
Sbjct: 484 LGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516


>gi|206975598|ref|ZP_03236510.1| sensor histidine kinase/response regulator [Bacillus cereus
           H3081.97]
 gi|206746060|gb|EDZ57455.1| sensor histidine kinase/response regulator [Bacillus cereus
           H3081.97]
          Length = 896

 Score =  287 bits (734), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 78/338 (23%), Positives = 147/338 (43%), Gaps = 18/338 (5%)

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            +D++ +            +    +  +L      T E        + +   L++  ++L
Sbjct: 395 HQDLIHQTVDNLGLTIHSIMGRMRIQTLLHESQAMTEELQVQSEELQTQAEELQMQAEEL 454

Query: 549 PFSSCYSLTMHDISEWKQEKN-----KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
             ++    +  + +E K         +L        + S +KS+FLA +SHE+RTPL +I
Sbjct: 455 RTTNEQLESRTEEAEQKTADLQVTKLELEEKASELLRSSKYKSEFLANMSHELRTPLNSI 514

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +  SE++K      L +    E A  I  SG  +L ++ND+LD+SK+E+GK+++ FE  +
Sbjct: 515 LLLSEMLKENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIFEATN 573

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSG 722
           + +  +         A +K +      ++ IP +   D + ++QI  N+LSNA  FT  G
Sbjct: 574 ISDMAASMHQNFLHIAAQKNVEFTVEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKG 633

Query: 723 GQ------IIISTTHTS-----NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
                   +  S           + + + V+DTG+G+   + +   + F Q   +   + 
Sbjct: 634 SVSLHFDSVETSNLSHDMQSISKDWISISVKDTGIGIAKEQHQLIFEAFQQADGATIRKY 693

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            GTGLGL + K       G   + S   +G+   +  P
Sbjct: 694 GGTGLGLSICKEFARLLGGWITLESNVGEGSTFTVYIP 731


>gi|264678722|ref|YP_003278629.1| Proline sensor PrlS [Comamonas testosteroni CNB-2]
 gi|262209235|gb|ACY33333.1| Proline sensor PrlS [Comamonas testosteroni CNB-2]
          Length = 1089

 Score =  287 bits (734), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 104/603 (17%), Positives = 208/603 (34%), Gaps = 35/603 (5%)

Query: 225 FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYT 284
            +  + P  +   ++  SL+      D         +      ++  Q+           
Sbjct: 149 LAFPAAPVFVVSPSRQFSLSVPAVAADSSHTPLTRRVFLGVVQAIQ-QQASSESPQGVRQ 207

Query: 285 KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY- 343
                   + ++      +     P      D   + +            +++   +   
Sbjct: 208 DSHTPIEWRRDADLPGAMIGLLPLPLPWDADDAQPSASGGVY-----AATLFARDRISAS 262

Query: 344 ----ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399
                 P++      +    + I  G     D      ++    + L        A    
Sbjct: 263 ERPSFQPAYDDFWLMRRDGGVLIGEGRLPAADDIGFKASSEGLILRLADKSGDWTAVYLL 322

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC-SIL 458
            ++        L +  +             +               K   E      ++L
Sbjct: 323 GYSSFIKNHAWLPVGALSALLLVLAGGLGCRRWYRLNVTKPVQAAAKGVQETDAFNLTLL 382

Query: 459 EATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
           +    G+ ++ R  G +  +N   ++  G   +  L                N  L +I+
Sbjct: 383 DTVPVGLCVLYRSTGKVAFSNELAAQWLGIGADAELHNT----------PGANGLLRQIM 432

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI 577
                 ++E I      + + L +R +  +            DIS   + +     AK  
Sbjct: 433 GTTKPGSIESI---PGLDGRPLHVRFVPTRYKGQDVVLCAFADISARAEMERTQEQAKVQ 489

Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
           A++    KS FLA +SHEIRTPL  ++G  E++         +     + ++I  S  ++
Sbjct: 490 AQRAVEAKSTFLASMSHEIRTPLYGLLGTLEILAMTPL----SEEQRRHIDHIQNSSGIL 545

Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR- 696
             +++D+LD++KIESG++ L        E V  A++       +K ++I +    ++P  
Sbjct: 546 QQLISDILDVTKIESGQLALEAVAFDPGELVQSAVASCAPAGEQKGLVIYSCVDTSVPAC 605

Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVILR--VRDTGVGMTNYEL 753
           +  D   ++QI  N+L NAI FT +G  I  +      +E+V L   V D+G G+   E 
Sbjct: 606 VYGDAARIRQILTNLLGNAIKFTSAGHVITRMRAESLPDEKVRLSLQVVDSGPGIGPEER 665

Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
           ++  +PF QI N       G G+GL L+  +      + ++ S P  G+   +   L   
Sbjct: 666 KRLFEPFYQI-NGGAHTVGGMGIGLALSAKLAKLMGSELHVTSEPGLGSSFSVDLVLEKG 724

Query: 814 SHP 816
           S P
Sbjct: 725 SAP 727


>gi|153807923|ref|ZP_01960591.1| hypothetical protein BACCAC_02209 [Bacteroides caccae ATCC 43185]
 gi|149129532|gb|EDM20746.1| hypothetical protein BACCAC_02209 [Bacteroides caccae ATCC 43185]
          Length = 991

 Score =  287 bits (734), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 86/407 (21%), Positives = 172/407 (42%), Gaps = 26/407 (6%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
                  P N   +    +  +    ++K+     +L   L+  +      +     +  
Sbjct: 450 DIVLRGNPHNKMIDVFCLDSTELHRAQQKLSTINNKLAMSLDVANIVPWKWDLTSRTILC 509

Query: 478 --NRAVS---KLFGYPVEDILRKPFTVF--LEQNTPSVMNHYLTEILSLDLRQTLEKITL 530
             N+ +    +  G   E +       F  + +     +     +++     +  E+  +
Sbjct: 510 DINKPIELSTQGKGIAEEQLAVPDIQYFSKIFKEDRKRVEQAYKDLIEGRSEKVKEEYRV 569

Query: 531 GSTKEE--KLLSLRI-IIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
            +T +   ++  +      +    +        +   I+E K+ + +L +AK  AE+ + 
Sbjct: 570 INTHKGFHRIEWVEAQAAVETRDENGKPLTLVGSSLIITERKKMEQELINAKNRAEESNR 629

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
            KS FLA +SHEIRTPL AI+GFS ++ +            EY + I+ +  L+L +++D
Sbjct: 630 LKSAFLANMSHEIRTPLNAIVGFSGILASTEEEEEK----QEYVSIIENNNTLLLQLISD 685

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703
           +LD+SKIE+G ++LH+  V +++ + E  +  QL      + +             +   
Sbjct: 686 ILDLSKIEAGTLDLHYSNVEINDLMRELENSCQLKLKSDNVKLEFVAPEEPCFANIEKNR 745

Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHT-SNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
           + Q+ +N ++NAI FT  G    I   +   N E+   V DTG G+   +L+     F +
Sbjct: 746 LSQLIINFVTNAIKFTSQGS---IRFGYERQNNELYFYVTDTGCGIPQDKLDSIFGRFVK 802

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           + +      +GTGLGL + + +++   GK  + S   KG+      P
Sbjct: 803 LNSF----AQGTGLGLSICRTLINHMGGKIGVESEEGKGSTFWFTLP 845


>gi|114569187|ref|YP_755867.1| PAS/PAC sensor signal transduction histidine kinase [Maricaulis
           maris MCS10]
 gi|114339649|gb|ABI64929.1| PAS/PAC sensor signal transduction histidine kinase [Maricaulis
           maris MCS10]
          Length = 535

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 89/409 (21%), Positives = 156/409 (38%), Gaps = 21/409 (5%)

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469
           + ++  +                +          +        +    ++ TSDGI    
Sbjct: 125 AQSVGIVVAMFKRPADVADEMLAVFNHYRRRLTGEILAAESGDRAALAMKGTSDGIVDFC 184

Query: 470 REGIILSTNRAVSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
            E   +  +    +L GY   ++    + FT  +  +                    L  
Sbjct: 185 LETDQIFISARGRELLGYQPRELTAATETFTNLIHADDRPRFQSAQQSHYRAGRPFDLTV 244

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSLT--MHDISEWKQEKNKLSHAKKIAEKESSHK 585
                    +   +R    + P      +   M DI +  +        ++ A + S  K
Sbjct: 245 RLKVVGGLHRWFRMRGEAVRTPDGDPVRMVGAMTDIHDLVEA-------RQQATEASRAK 297

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
           S FLA +SHE+RTP+  ++G S ++      P       E  N I+ SG  +L I+ND+L
Sbjct: 298 SRFLATMSHEVRTPMNGVLGMSALLATTDLEP----SQREMVNLIEGSGQALLTILNDIL 353

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN-NIPRILADLRSV 704
           D++ IESG+  +  +  +  E V       ++ A EK + +           ++ D   V
Sbjct: 354 DLANIESGRFEVEQDTFNPAELVRTVAGPYRMKAMEKGLNLHLEIDPVAEREVVGDPARV 413

Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTS----NEEVILRVRDTGVGMTNYELEKAMKPF 760
           +QI  N+LSNA+ F+  G ++ +    T       +V   V DTG+GM    + +   PF
Sbjct: 414 RQILSNLLSNAVKFSDRG-EVRVRCLMTQTADRAHDVTFEVGDTGIGMDGDLMSRIFMPF 472

Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            Q     Q +  GTGLGL +AK + +   G   + S P  G+   +  P
Sbjct: 473 SQGEAVMQRKNGGTGLGLAIAKKLAELMGGDITVESAPGAGSKFTVKLP 521


>gi|113474513|ref|YP_720574.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101]
 gi|110165561|gb|ABG50101.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101]
          Length = 1130

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 75/260 (28%), Positives = 125/260 (48%), Gaps = 10/260 (3%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E  +  N L    +  +     K +FLA  SHE+RTPL  IIG +E + +   G +    
Sbjct: 431 ELAESFNHLERKNQELQHLDQLKDEFLANTSHELRTPLNGIIGIAESMMDGATGNIS-EL 489

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             +  + I  SG+ + ++VND+LD SK+    + L    V + E     ++  ++   EK
Sbjct: 490 QNKNLSMIVVSGHRLANLVNDILDFSKLRHHSIKLKMSSVGMREVTEVVLTFSRIILKEK 549

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS---NEEVIL 739
            + +  + ++++P + AD   ++QI  N++ NAI FT  G  I IS        N ++ +
Sbjct: 550 DVQLINAISSDLPPVEADENRIQQIMHNLVGNAIKFTEVG-VITISAELIDLKNNPKMAI 608

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V DTG+G+   + E     F Q   S + R  GTGLGLP+ K +V+ + G   + S P 
Sbjct: 609 TVSDTGIGIPEDKHEAIFASFEQGDGSTERRYGGTGLGLPITKQLVELHGGTISVKSNPG 668

Query: 800 KGTLIEIIF-----PLYDTS 814
            G+           P++  S
Sbjct: 669 VGSEFTFTLNISKEPVHSFS 688


>gi|329923220|ref|ZP_08278706.1| sporulation kinase A [Paenibacillus sp. HGF5]
 gi|328941546|gb|EGG37836.1| sporulation kinase A [Paenibacillus sp. HGF5]
          Length = 357

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 83/359 (23%), Positives = 162/359 (45%), Gaps = 20/359 (5%)

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
             +E    G   I+ EG I+  N A  ++ GY  E+ L  P+  ++     +     +  
Sbjct: 14  QAIEVAPIGTVFIDSEGSIIRINPAACRMLGYEEEECLHHPYNDWVYPEDVNKDREMMEN 73

Query: 516 ILSLDLRQT-LEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLS 572
             +  +    +EK  +    + + +S R+   +        Y   + DI++ K+  ++  
Sbjct: 74  FKTGRISSLQMEKRLIHKQGDIRWVSCRLSTARSREGRALGYVAHLTDITDMKRAADQEE 133

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
                ++K S       A ++HEIR P+T+I GF ++I++         R  EY + I  
Sbjct: 134 KRLIQSDKLSMA-GQLAAGIAHEIRNPMTSIKGFVQLIRSGAG------RKDEYFDIISS 186

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
               +  IV++LL ++K +S    + FE   + + + + I+L+   A    + I T F  
Sbjct: 187 EIERIELIVSELLFLAKPQS----VKFERADIRQLLDQVITLLNTQAIIHNVEIITDFGE 242

Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752
               +  D+  +KQ+ +N + NA+   P GG++ I     S++ V +   D G G+    
Sbjct: 243 QEANVDGDVNHLKQVFINFIKNAVESMPDGGKLTIRLERGSDQTVAIHFTDNGCGIPESI 302

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
           L +  +PF         + +G GLG  ++K M++ + G+ ++ S   +GT I ++ PL 
Sbjct: 303 LSRLGEPFFTT------KEKGNGLGFMISKKMIEDHRGQVHVTSKLQEGTTITVMLPLS 355



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 41/130 (31%), Gaps = 5/130 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN--TWYGK 146
           ID+ G +  I+    + +G    + +     D      ++ +  + +  K     +   +
Sbjct: 26  IDSEGSIIRINPAACRMLGYEEEECLHHPYNDWVYPEDVNKDREMMENFKTGRISSLQME 85

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI-VHVNRVDNDPRALGKRLDKKFS 205
             L   +G   +V   L+     SR     G+      +   +   D          K S
Sbjct: 86  KRLIHKQGDIRWVSCRLSTA--RSREGRALGYVAHLTDITDMKRAADQEEKRLIQSDKLS 143

Query: 206 HLHEIKKGHS 215
              ++  G +
Sbjct: 144 MAGQLAAGIA 153



 Score = 55.0 bits (131), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/136 (11%), Positives = 41/136 (30%), Gaps = 10/136 (7%)

Query: 320 NLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
           +   + ++  PI   F+ S G++   NP+   +  Y+  + +                D 
Sbjct: 10  DFMVQAIEVAPIGTVFIDSEGSIIRINPAACRMLGYEEEECLHHPYNDWVY-----PEDV 64

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
           N  + +M         +       I    +    ++       ++    +       +  
Sbjct: 65  NKDREMMENFKTGRISSLQMEKRLIHKQGD-IRWVSCRLSTARSREGRALGYVAHLTDIT 123

Query: 439 DTRINKRKMEIEVMQL 454
           D +   R  + E  +L
Sbjct: 124 DMK---RAADQEEKRL 136


>gi|260869464|ref|YP_003235866.1| hybrid sensory histidine kinase BarY, in two-component regulatory
           system with UvrY [Escherichia coli O111:H- str. 11128]
 gi|257765820|dbj|BAI37315.1| hybrid sensory histidine kinase BarY, in two-component regulatory
           system with UvrY [Escherichia coli O111:H- str. 11128]
          Length = 918

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 85/333 (25%), Positives = 153/333 (45%), Gaps = 17/333 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +FG+ +   +  P    +               L   +   +             +++ +
Sbjct: 193 IFGWRLMRDVTGPIRNMVNTVDR-----IRRGQLDSRVEGFMLGELDMLKNGINSMAMSL 247

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 248 AAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTP 307

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+ +       P       ++ N I+RS N +L I+ND+LD SK+E+GK+ L  
Sbjct: 308 LNGVIGFTRLTLKTELTPT----QRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILES 363

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P  L   + E ++L+   +++K + +  +  +++P  ++ D   ++QI  N++ NAI F
Sbjct: 364 IPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKF 423

Query: 719 TPSGGQ-IIISTTHTSNEEVILRV--RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T +G   I++     SN +V + V  RDTG+G+   +  +  + F Q   S   R  GTG
Sbjct: 424 TENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTG 483

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           LGL + + +V+   G     S P +G+      
Sbjct: 484 LGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516


>gi|189465571|ref|ZP_03014356.1| hypothetical protein BACINT_01929 [Bacteroides intestinalis DSM
           17393]
 gi|189437845|gb|EDV06830.1| hypothetical protein BACINT_01929 [Bacteroides intestinalis DSM
           17393]
          Length = 1039

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 80/389 (20%), Positives = 165/389 (42%), Gaps = 29/389 (7%)

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST--NRAVSKLFGYPVEDILRK 495
            +    ++K+     +L   LE  +      + +   +    NR +        +++   
Sbjct: 516 TELHKAQQKLSATNSKLAMALEVANIVPWKWDLKSKTILCDINRPIE--LSTDEQEVEDS 573

Query: 496 PFTVF-------LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI----I 544
             +V        + +     +     +++     +  E+  + + ++  L  +       
Sbjct: 574 QLSVPDSQYFSKIFKEDRERVKQAYRDLIEGRAEKVKEEYRIVNVQKNNLHKVEWVEAQA 633

Query: 545 IKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
             +             +   I+  K+ + +L+ AK++AE+ +  KS FLA +SHEIRTPL
Sbjct: 634 AVEARDEDGKPLTLIGSSLVITNRKKMEQELTTAKELAEESNRLKSAFLANMSHEIRTPL 693

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
            AI+GFS ++ +            EY + I+ +  L+L +++D+LD+SKIE+G + L++ 
Sbjct: 694 NAIVGFSGILASTE----EEQEKQEYVSIIENNNTLLLQLISDILDLSKIEAGTLELNYS 749

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720
            + L+E + E      L      + +          +  +   + Q+ +N+++NAI FT 
Sbjct: 750 NIELNELMRELERGFLLRVKTDAVKLEFVEPAGPCMVYTEKNRLSQLMINLVTNAIKFTE 809

Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
            G  I        N E+   V DTG G+   + +     F ++ +      +GTGLGL +
Sbjct: 810 KGS-IRFGYEMREN-ELYFYVADTGCGIPKDKQQNIFGRFVKLNSF----AQGTGLGLSI 863

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            + +++   G+  + S   KG+      P
Sbjct: 864 CQTLIERMGGRIGVESEEGKGSTFWFTLP 892


>gi|110806548|ref|YP_690068.1| hybrid sensory histidine kinase BarA [Shigella flexneri 5 str.
           8401]
 gi|110616096|gb|ABF04763.1| sensor-regulator [Shigella flexneri 5 str. 8401]
          Length = 918

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 85/333 (25%), Positives = 153/333 (45%), Gaps = 17/333 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +FG+ +   +  P    +               L   +   +             +++ +
Sbjct: 193 IFGWRLMRDVTGPIRNMVNTVDR-----IRRGQLDSRVEGFMLGELDMLKNGINSMAMSL 247

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 248 AAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTP 307

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+ +       P       ++ N I+RS N +L I+ND+LD SK+E+GK+ L  
Sbjct: 308 LNGVIGFTRLTLKTELTPT----QRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILES 363

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P  L   + E ++L+   +++K + +  +  +++P  ++ D   ++QI  N++ NAI F
Sbjct: 364 IPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKF 423

Query: 719 TPSGGQ-IIISTTHTSNEEVILRV--RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T +G   I++     SN +V + V  RDTG+G+   +  +  + F Q   S   R  GTG
Sbjct: 424 TENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTG 483

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           LGL + + +V+   G     S P +G+      
Sbjct: 484 LGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516


>gi|83944202|ref|ZP_00956658.1| two-component hybrid sensor and regulator [Sulfitobacter sp. EE-36]
 gi|83845069|gb|EAP82950.1| two-component hybrid sensor and regulator [Sulfitobacter sp. EE-36]
          Length = 1088

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 94/525 (17%), Positives = 197/525 (37%), Gaps = 38/525 (7%)

Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVD 358
                       +       +      V+   +   +  +G + + N  F+  +      
Sbjct: 363 RENARQAHARKDVLKSEVRSKQFYRNAVEAHTVFCMLNQNGAITHVNDQFVQASGRSREA 422

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
            I      ST L     + N  +    +  +  +       +  +      ++ +     
Sbjct: 423 LI------STPLVDVMDAGNRGVLTGDVLPAMMSGTPWKGTI-VLHKTDGKAVWLQCSFI 475

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI-ILST 477
              +   +      +  +   TR       +   +  + LE   D + +   +   ++  
Sbjct: 476 PITDGEKQLREIAIVASDMTKTREG-----VSEARFNNTLELLQDHVVVFQPQTYAVMYA 530

Query: 478 NRAVSKLFGYP--VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
           N +V++        +D   K  +  + +     +      ++    R+          K 
Sbjct: 531 NASVARHLMRHDESDDWRGKSLSDLIGKRDYDSLRERCAGLIKGPERRV---TWEVEAKS 587

Query: 536 EKLLSLRIIIK-KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
                + +           +     D+S+ K  +                K++FL+ VSH
Sbjct: 588 GITYDISLEYVCPAQDEPRFIAIYRDVSQRKVAE--------------KAKTEFLSTVSH 633

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           E+RTPLT+I G   ++ +   G L + +          S + ++ ++N +LD+ KIE+G 
Sbjct: 634 ELRTPLTSIKGALGLVLSGATGQLPD-KMKGLITIAASSCDRLILLINSILDMEKIETGT 692

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT--SFANNIPRILADLRSVKQIALNIL 712
           ++   + ++L E ++ A+   QLYA    + +R   +  +++     D + + Q+  N+L
Sbjct: 693 LDFRMKTLNLSETLNTALVPNQLYAERAGVSLRRVDTPDDDVMLTYGDSKRLVQVLDNLL 752

Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           SNA+ F+  GG+I+I+  H   +++ + +RD G G+         + F Q  +S      
Sbjct: 753 SNAVKFSEHGGEILIAL-HAVGDQLRISIRDFGTGIQAAAQASVFEKFTQGDSSDSRSKG 811

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP-LYDTSHP 816
           GTGLGL +AK ++D + G+   FS    GT I I  P L     P
Sbjct: 812 GTGLGLTIAKVIIDHHQGQITFFSREDVGTEIIISLPRLAQEDAP 856


>gi|116750365|ref|YP_847052.1| multi-sensor hybrid histidine kinase [Syntrophobacter fumaroxidans
           MPOB]
 gi|116699429|gb|ABK18617.1| PAS/PAC sensor hybrid histidine kinase [Syntrophobacter
           fumaroxidans MPOB]
          Length = 981

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 87/649 (13%), Positives = 187/649 (28%), Gaps = 49/649 (7%)

Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSSLTEYYAHKDD 252
              +  + KF  L        ++   +                 K ++  L        +
Sbjct: 223 QSLRESEHKFKTLFNNAGDGIAIHDLEGRFLEVNQVLCDRLGYSKEELLRLGLMGIDASE 282

Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL---QNNSKESFEYLSHRNHP 309
                   +           E  H +        +    +                    
Sbjct: 283 GSVLLPEWVDELTHKGSAFVETIHAVRDGSRIPVEVNSRMVDFGGERAILSMVRDITERK 342

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
                  E E          PI   + + G L   N     +  Y   + +  +  +  L
Sbjct: 343 HAEGALRESEATLKSIFRVAPIGIGLLTDGILKQVNDRLCRMVCYSRQELVGGSARMLYL 402

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
                          + +    T       + T+    + ++    +     +       
Sbjct: 403 DQEEFERAGKEEHAQIRHWGTGT-------VETLWKRGDGAVIDVLLSSTPIDPTDLAAG 455

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
                 +  + +  +  +     +   + E   + I  ++ +G +   NR     FGY  
Sbjct: 456 VTFTALDISERKRAEAALSESQARFRELAELLPETIFEMDADGRLTFVNRNAYDHFGYSK 515

Query: 490 EDI-LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
           E+I       + +              +++ +             K+     + I     
Sbjct: 516 EEIERGVNGYMMISPEDRPKAAENARRVMAGERIGL--NEYKALRKDGCTFPVIIHSSAK 573

Query: 549 PFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
                       + DI+E K+ + +L  A+K+              ++H+    L AI+G
Sbjct: 574 LDDGKPSGIRGIIIDITETKKLEAQLRQAQKM-----EALGTLAGGIAHDFNNILAAILG 628

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
           ++E+          N     Y   + ++ +   ++V  +L  S++   +         + 
Sbjct: 629 YTEMALTDVSR---NNPAGHYLEQVLKACHRAKELVRQILATSRLRKPQ---ERARTQIA 682

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS-GGQ 724
             V EA+ L++       I IR++        + D   V Q+ +N+ +NA H     GG 
Sbjct: 683 PIVKEALKLLRASLPA-TIEIRSNIETQTGGAMVDPTEVHQVVVNLCTNAFHAMEERGGV 741

Query: 725 IIISTT--------------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           + +S                  S   + L V DTG G+     E+   P+          
Sbjct: 742 LEVSLAEVTIDEEADASPAGLRSGNYLRLTVGDTGHGIDPAIRERIFDPYFTTK----EV 797

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819
           G+G+GLGL     ++    G   + S P  GT  ++ FP  + +   + 
Sbjct: 798 GKGSGLGLAAVHGIMKNYGGAVTVDSDPGVGTRFDVYFPSVEVAQREEA 846



 Score = 99.3 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 49/417 (11%), Positives = 121/417 (29%), Gaps = 41/417 (9%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLC--DVSDILHIDPNNHIGDLLKRQNTWYGKT 147
           D  G   E+++ L   +G    +++ + L   D S+   + P   + +L  + + +  +T
Sbjct: 247 DLEGRFLEVNQVLCDRLGYSKEELLRLGLMGIDASEGSVLLPE-WVDELTHKGSAFV-ET 304

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF-GIVHVNRVDNDPRALGKRLDKKFSH 206
                +G+   +P+++ +  +     +F G R    +V             +  +     
Sbjct: 305 IHAVRDGS--RIPVEVNSRMV-----DFGGERAILSMVRDITERKHAEGALRESEATLKS 357

Query: 207 LHEIKKGHS---------SVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257
           +  +               V      +               +    E +         +
Sbjct: 358 IFRVAPIGIGLLTDGILKQVNDRLCRMVCYSRQELVGGSARMLYLDQEEFERAGKEEHAQ 417

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
                T    +L ++ D   I++   +       L   +  +F  L         A   E
Sbjct: 418 IRHWGTGTVETLWKRGDGAVIDVLLSSTPIDPTDL--AAGVTFTALDISERKRAEAALSE 475

Query: 318 GENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
            +    E  +  P   F     G L + N +      Y   +      G   +    +  
Sbjct: 476 SQARFRELAELLPETIFEMDADGRLTFVNRNAYDHFGYSKEEIERGVNGYMMISPEDRPK 535

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
                + VM                 ++ +      +     +  +  P  +   GI  +
Sbjct: 536 AAENARRVMAGERIG-----LNEYKALRKDGCTFPVIIHSSAKLDDGKPSGIR--GIIID 588

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
             +T+  + ++  +  ++ + L   + GIA           N  ++ + GY    + 
Sbjct: 589 ITETKKLEAQLR-QAQKMEA-LGTLAGGIA--------HDFNNILAAILGYTEMALT 635



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 55/494 (11%), Positives = 126/494 (25%), Gaps = 38/494 (7%)

Query: 56  DQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIG 115
           D ++   +     +S+  F            + +DA G L  ++       G    ++  
Sbjct: 462 DISERKRAEAALSESQARFRELAELLP-ETIFEMDADGRLTFVNRNAYDHFGYSKEEIER 520

Query: 116 --MRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNR 173
                  +S         +   ++  +     +      +G    V I  +A      + 
Sbjct: 521 GVNGYMMISPEDRPKAAENARRVMAGERIGLNEYKALRKDGCTFPVIIHSSAKL---DDG 577

Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH 233
           + SG RG  I           A  ++  K  +                  I         
Sbjct: 578 KPSGIRGIII--DITETKKLEAQLRQAQKMEALGTLAGGIAHDFNNILAAILGYTEMALT 635

Query: 234 LRMKNKVSS------LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287
              +N  +       L   +  K+ V +      L   +     Q         +  +  
Sbjct: 636 DVSRNNPAGHYLEQVLKACHRAKELVRQILATSRLRKPQERARTQIAPIVKEALKLLRAS 695

Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYF-----DEGENLTPETVDKCPIPFFVYSHGNLF 342
              T++  S    +       P+              +   E      +     +     
Sbjct: 696 LPATIEIRSNIETQTGGAMVDPTEVHQVVVNLCTNAFHAMEERGGVLEVSLAEVTIDEEA 755

Query: 343 YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT 402
            A+P+ L    Y  +   +   G+   +           K V             A +H 
Sbjct: 756 DASPAGLRSGNYLRLTVGDTGHGIDPAIRERIFDPYFTTKEVGKGSGLG-----LAAVHG 810

Query: 403 IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
           I  N   ++ +   P                + E+          + E            
Sbjct: 811 IMKNYGGAVTVDSDPGVGTRFDVYFPSVEVAQREEAPEEKAPPLGKAER----------- 859

Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522
             I +++ E +++   ++V +  GY V  +      + L +  P   +  +T+     + 
Sbjct: 860 --ILLVDDEDVLVEMGKSVLEHLGYKVRGVTDSVEALELFRAQPDRFDLVITDYTMPRMT 917

Query: 523 QT-LEKITLGSTKE 535
              L +  +    +
Sbjct: 918 GVALAREMMRIRPD 931


>gi|330446946|ref|ZP_08310597.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328491137|dbj|GAA05094.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 931

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 88/341 (25%), Positives = 157/341 (46%), Gaps = 19/341 (5%)

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
           F Y +   + +P +  +      V++      L + +   L             +++ + 
Sbjct: 191 FAYRLMQDVTQPISHMIS-----VVDRIRRGHLDIRIEGRLLGELDTLKNGINAMAISLS 245

Query: 545 IKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
              +           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTPL
Sbjct: 246 EYHIEMQQSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPL 305

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
             +IGF+  +   +     N    +Y   I+ S N +L I+ND+LD SK+E+GK+ L   
Sbjct: 306 NGVIGFTRQMLKTKL----NTSQKDYLLTIENSANNLLTIINDILDFSKLEAGKLLLENI 361

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFT 719
           P    +++ E + L+   A+EK + +     N IP  ++ D   ++Q+  N++ NA+ FT
Sbjct: 362 PFDFTDSLDEVMRLLAPSAHEKGLELTLKIDNRIPPGLIGDPLRIQQVVTNLIGNAVKFT 421

Query: 720 PSGGQIIISTTH----TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
             G  I +S        +N E+   VRDTG+G++  +  +  + F Q   S   R  GTG
Sbjct: 422 EHG-NIDVSVELKSDIDNNIELQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTG 480

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           LGL + + +V    G+  + S   +G+       +  T  P
Sbjct: 481 LGLVITQKLVSQMGGEVSLTSRLHQGSTFWFTIKMNKTDLP 521


>gi|147676581|ref|YP_001210796.1| hypothetical protein PTH_0246 [Pelotomaculum thermopropionicum SI]
 gi|146272678|dbj|BAF58427.1| hypothetical protein [Pelotomaculum thermopropionicum SI]
          Length = 487

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 68/240 (28%), Positives = 122/240 (50%), Gaps = 3/240 (1%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L       E+    + +F+A VSHE+RTPL+ ++G++E + +       +    +Y N 
Sbjct: 248 RLQDKVAALERLDQTRREFVANVSHELRTPLSIMLGYTEALIDGL--AHSDTDRQKYLNN 305

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I      +  +V +LLD+S++E+G++N       +           Q  A +K + +R S
Sbjct: 306 IHEEILRLRRLVTELLDLSRMEAGQVNAEMHETDVAAVAGRVFDKFQAVAAKKGVELRNS 365

Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749
             + +  +LA+   ++Q+ +N+L NAI  TP+GG + + T +    E+ + + D G G+ 
Sbjct: 366 LPSVLHPVLANPDRLEQVFINLLDNAIRVTPAGGVVEM-TAYELKNELRVSISDEGHGIP 424

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             E     + F ++  S+   GEGTGLGL + K +V+A+ G   I S P KG+      P
Sbjct: 425 PEEQPLVWERFYKVDKSRTRTGEGTGLGLAIVKKIVEAHGGSVEIASMPEKGSTFSFTIP 484


>gi|32481651|gb|AAP84165.1| RcsC [Pseudomonas aeruginosa PA14]
          Length = 1084

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 92/596 (15%), Positives = 195/596 (32%), Gaps = 41/596 (6%)

Query: 230 PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL-TSEESSLPEQEDFHTINLNQYTKKQY 288
           P P L + +   S            + ++           +  +     +  +       
Sbjct: 158 PAPQLLIFDLSGSTRLAVPSIPSTAQRDRLSGSYPMIVERILARLRTRPVGEDAQRVHWI 217

Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSF 348
                     + E L           +   E               +     L    P+F
Sbjct: 218 --RADRYRDSALEMLGVARVDLPETLWWHDEPNHLIIAASLLDLRRINDFEQLVE-RPAF 274

Query: 349 LLLTKYKSV-DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
              +      + +  A   + L D   L+       ++    +              +  
Sbjct: 275 DSYSLVSPDGEVLLGAAPATGLRDGLNLTRQGVAVQLLSQPENGWLAVYRTDYGNF-FRH 333

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
              L    +             +              R++        ++++     + +
Sbjct: 334 SRWLVAGLLLTPALLLAGWLGMRWYTSSVVNPVHRAHRQLVESDTFSRTLIQTAPVALVV 393

Query: 468 INRE-GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
           + ++   +++ N   ++  G P E +         +                  +   + 
Sbjct: 394 LTQDDQQLVTCNHLAAQWLGGPTEILGLTSNWKLFD--------------ARGQVPGDIC 439

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
                     + L       +   +       +DI+   + +  LS+AK+ A+  S  K+
Sbjct: 440 IQV-----GGRYLQTAFAATRYAGTEAVLCVFNDITVHCEAETALSNAKRAADAASQAKT 494

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
            FLAR+SHEIRTPL  ++G              N R   Y   I  S   ++ +++D+LD
Sbjct: 495 LFLARMSHEIRTPLYGVLGT----LELLDLTTLNERQRAYLRTIQSSSATLMQLISDVLD 550

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVK 705
           +SKIE+G+M L     +  + V E +      A  K +         +P +++ D+  ++
Sbjct: 551 VSKIEAGQMALTLAAFNPLDLVREVLGNFAASAMAKDLQFYACIDTEVPAQLIGDVTRIR 610

Query: 706 QIALNILSNAIHFTPSGGQI-IISTTHTSNEEVIL--RVRDTGVGMTNYELEKAMKPFGQ 762
           Q+  N+++NA+ FT  G  +  +     ++   +L  +V DTG+G+ + + E+  + F Q
Sbjct: 611 QVLNNLVNNALKFTDIGRVVLRVKLLSRNDGRALLQWQVADTGIGIAHEQQERLFEAFYQ 670

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
           +  S      GTGLGL +   + +   G   + S    G+   ++        P D
Sbjct: 671 V--SGAHHAGGTGLGLSICWHLAEMMGGHLRMVSETGLGSSFSLVL-----ELPED 719


>gi|83945797|ref|ZP_00958140.1| tyrosine kinase DivL [Oceanicaulis alexandrii HTCC2633]
 gi|83850800|gb|EAP88662.1| tyrosine kinase DivL [Oceanicaulis alexandrii HTCC2633]
          Length = 818

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 105/739 (14%), Positives = 237/739 (32%), Gaps = 45/739 (6%)

Query: 102 LPKTIGNYAFKMIGMRLCDVS---------DILHIDPNNHIGDLLKRQNTWYGKTTLWPI 152
            PK  G+ A     ++  ++S             +D  +          T   +     +
Sbjct: 84  APKLYGSPAALASLLQFAELSQSAGANGQIATDILDSISEFSARNASGETVSFRDRARAL 143

Query: 153 EGTNLYVPIDLAALPIY--SRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK----KFSH 206
                   + L          +   +G +    +    +     A    +       F  
Sbjct: 144 MAEGQPFSLTLTGRSGRKIQADGRPAGRQLVIWLTDTALRQTEGASDDEISHDDPIGFMD 203

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
           +       +    +K  +    +        + V+ + +     +  L  +   +L S +
Sbjct: 204 MMGRNPVPAWRMDQKGRLNWVNNAYVKAVEASDVAEVIDRQLLLEPTLGEQARDVLNSGD 263

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
                      + L    +     +       +   +   +     A  +        T+
Sbjct: 264 PRTG----ARGVVLAGQRRVMSVTSYPVQGGVTGFAVDVTDGEEAKAALNRFREAHDLTL 319

Query: 327 DKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
           +       ++     L + N +F  +   +    +        LLD  +       +   
Sbjct: 320 NHMTEAVAIFDRAKKLVFYNRAFSQMFNVE-EAFLNDRPAHGVLLDRLREKRRLPEQADY 378

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
                    A  +R  T          +  +P  +  +        G      +   ++ 
Sbjct: 379 SAWRQ----AELSRYETAPNQDAEPDELWALPDGRTLRVARQRHPMGGLLLIFEDMTDQL 434

Query: 446 KMEIEVM-QL---CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
            ++     QL    + L+   + +A+   +G +   N A   L+    E +    F   +
Sbjct: 435 SLQARYNTQLKVQRATLDKLHEAVAVFGSDGRLKLRNAAFETLWKLDPERLDGVHFDDMV 494

Query: 502 EQNTP-----SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556
              TP              I                  +  +L+               +
Sbjct: 495 ASCTPLYDNAEAWGQLKARITDPSPESRKAMTGEIRRADHSVLTWLTRPLP---DGATLI 551

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
              DI++ ++ ++ L    +  E     K++F+  VS+++RTPLT I G+++++     G
Sbjct: 552 AWDDITDSRRIESALRDRAEALEASERIKTEFVEHVSYQLRTPLTTIHGYADLLAGGFAG 611

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
            L + R  E+   I  +   +  +++D+LDI+ I++G++ +    V++     E++ L+ 
Sbjct: 612 DLSD-RQKEHMGAIQTASAQLGKLIDDILDIAAIDAGQLEMELGDVNVHALAEESMELIA 670

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
             A    I +  +   + P I AD + +KQ+  N+L+NA+     GG + +     + ++
Sbjct: 671 SRAEHSGIKLTLNADEDGPLIRADGKRLKQVIYNLLTNAMDHVNPGGAVEVGAEV-AGDD 729

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           V L V D GVG+      K  + F +        G        L   ++  + G   + S
Sbjct: 730 VSLWVADDGVGIAPDRQAKIFERFERGDGGGAGLGL------ALVNDIIRLHGGWVELES 783

Query: 797 TPAKGTLIEIIFPLYDTSH 815
            P +GT +    P   +S 
Sbjct: 784 EPGEGTRVTCHLPRLTSSE 802


>gi|323180217|gb|EFZ65769.1| signal transduction histidine-protein kinase barA [Escherichia coli
           1180]
          Length = 918

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 85/333 (25%), Positives = 153/333 (45%), Gaps = 17/333 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +FG+ +   +  P    +               L   +   +             +++ +
Sbjct: 193 IFGWRLMRDVTGPIRNMVNTVDR-----IRRGQLDSRVEGFMLGELDMLKNGINSMAMSL 247

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 248 AAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTP 307

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+ +       P       ++ N I+RS N +L I+ND+LD SK+E+GK+ L  
Sbjct: 308 LNGVIGFTRLTLKTELTPT----QRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILES 363

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P  L   + E ++L+   +++K + +  +  +++P  ++ D   ++QI  N++ NAI F
Sbjct: 364 IPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKF 423

Query: 719 TPSGGQ-IIISTTHTSNEEVILRV--RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T +G   I++     SN +V + V  RDTG+G+   +  +  + F Q   S   R  GTG
Sbjct: 424 TENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTG 483

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           LGL + + +V+   G     S P +G+      
Sbjct: 484 LGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516


>gi|307717937|ref|YP_003873469.1| histidine kinase [Spirochaeta thermophila DSM 6192]
 gi|306531662|gb|ADN01196.1| putative histidine kinase [Spirochaeta thermophila DSM 6192]
          Length = 900

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 75/252 (29%), Positives = 130/252 (51%), Gaps = 11/252 (4%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E  +   +L  A ++ EK +  KS+FLA VSHE+RTPL AI+GF+E +K ++     +PR
Sbjct: 383 EVARRTRELREANRLLEKANRAKSEFLANVSHEMRTPLHAIMGFAEALKGEQ-----DPR 437

Query: 623 YIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
             E +   +      +  +++++LD+ K+E GK+ L   P +L E V     +++  A  
Sbjct: 438 EREGHLQLLLSEAQRLKVLIDEILDVEKMEQGKLTLDESPFNLHEVVGYVCRVMEENARR 497

Query: 682 KRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---V 737
           K +       + +P  ++ D   ++Q+ +N++ NA+ FT  GG + +        E   +
Sbjct: 498 KGLSFSFEIEDGVPVWVVGDPFRLQQVIMNLVGNAVKFTEEGG-VRVRVGCVEEGEGRWI 556

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
            + VRDTG+G+     EK  + F Q   S   R  G+GLG+ +A+ +V    G  ++ S 
Sbjct: 557 EVEVRDTGIGIPEEMREKVFESFVQADTSTTRRYGGSGLGMTIARELVRLMGGDVWLESE 616

Query: 798 PAKGTLIEIIFP 809
             KGT +    P
Sbjct: 617 VGKGTRVWFRIP 628


>gi|225155881|ref|ZP_03724367.1| Histidine kinase [Opitutaceae bacterium TAV2]
 gi|224803431|gb|EEG21668.1| Histidine kinase [Opitutaceae bacterium TAV2]
          Length = 662

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 88/510 (17%), Positives = 170/510 (33%), Gaps = 45/510 (8%)

Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
            D   +         +  AN +F                  S L+    +  ++      
Sbjct: 27  ADSLELAVVHDIEERVLAANSAFARKLG-------RRISDCSGLVLGDLVHADDVAGWRQ 79

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
                        R H      +    +++      +     +    I  +    R+   
Sbjct: 80  AATRINAAPYHIVREHRWHTA-QGWRWISWEETLLRDAGGHPLGVRSIGRDVTRRRLG-- 136

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
             E    +L   +E     I +   EG +   N   +++ GY +E++  +   V  E + 
Sbjct: 137 --EEHFSKLAQAVEQAPISIVMTTPEGRVQYVNPRFTQVTGYTLEEVFERDIRVLREGHP 194

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISE 563
                    E ++   +   E  T      +   ++ +   +              DI+E
Sbjct: 195 TEEAYRQFGETVAAGRQWRGELHTSYKGNPDVWENVLVSPIRNHADELTHLLCLRVDITE 254

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            K  + +L  ++K+           +  ++H+    L  I GF E   +   GP  +   
Sbjct: 255 RKHLEEQLRQSQKM-----ESLGTLVGGIAHDFNNLLAIIKGFIE--LSLTQGP-ADETL 306

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
             Y      +    + +V  +L  S+    K  + +  ++L++ + E + ++        
Sbjct: 307 QRYLREAYNAAQRSIGLVRQILTFSR----KAEVSYSLINLNQLIGEHVQMLAETFPR-T 361

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH------------ 731
           I  R      +P   AD   ++Q+ +N+  NA    P GG + ++T              
Sbjct: 362 IEFRQQLDPALPTFAADPNQLQQVLMNLCVNARDAMPDGGALTLATRRVPGSELAVLRAD 421

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
              + V + V DTG GMT    E   +PF     ++     GTGLGL +   +V  + G 
Sbjct: 422 EKQDYVEITVADTGTGMTPEVREHIFEPFFTTKQARA----GTGLGLAVVYGVVVNHQGL 477

Query: 792 FYIFSTPAKGTLIEIIFPLYDTSH--PHDC 819
           F + + P +GT   I  PL   S   P D 
Sbjct: 478 FDVDTAPGEGTKFRIYLPLATRSPVLPDDA 507



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 8/112 (7%), Positives = 33/112 (29%), Gaps = 5/112 (4%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD-ILHIDPNNHIGDLLKRQNTWYGKTTL 149
             G ++ ++    +  G    ++    +  + +     +     G+ +     W G+   
Sbjct: 159 PEGRVQYVNPRFTQVTGYTLEEVFERDIRVLREGHPTEEAYRQFGETVAAGRQWRGELHT 218

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
                 +++  + ++  PI +   E +      +              ++  
Sbjct: 219 SYKGNPDVWENVLVS--PIRNHADELTHLLCLRV--DITERKHLEEQLRQSQ 266


>gi|217972408|ref|YP_002357159.1| hybrid sensory histidine kinase BarA [Shewanella baltica OS223]
 gi|217497543|gb|ACK45736.1| Hpt sensor hybrid histidine kinase [Shewanella baltica OS223]
          Length = 933

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 91/245 (37%), Positives = 133/245 (54%), Gaps = 8/245 (3%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  AKK A + S  KS+FLA +SHE+RTPL  +IGF+  +         +   ++Y   
Sbjct: 284 ELDLAKKRALEASRIKSEFLANMSHELRTPLNGVIGFARQLVKTPL----HSSQVDYIKT 339

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I+RS   +L I+ND+LD SK+E+GKM L   P  L E + + I+L+   A  K + +   
Sbjct: 340 IERSATNLLGIINDILDFSKLEAGKMVLENMPFGLRETIGDTITLISGSAQAKGLELVVD 399

Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVILR--VRDTG 745
            A N+P  +  D   V QI  N++ NAI FT SG   + I     S E+V+LR  V DTG
Sbjct: 400 IAPNVPDNVNGDAMRVCQIINNLVGNAIKFTDSGSVMVKIELQSQSEEQVVLRCDVVDTG 459

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+   + +   + FGQ  +S   R  GTGLGL + K +V+   G+    S+P KG+   
Sbjct: 460 IGIDESQQDFLFQAFGQADSSISRRFGGTGLGLVITKRLVNQMGGQIGFTSSPEKGSNFW 519

Query: 806 IIFPL 810
              PL
Sbjct: 520 FSLPL 524


>gi|91783178|ref|YP_558384.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia xenovorans
           LB400]
 gi|91783208|ref|YP_558414.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia xenovorans
           LB400]
 gi|91687132|gb|ABE30332.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia xenovorans
           LB400]
 gi|91687162|gb|ABE30362.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia xenovorans
           LB400]
          Length = 789

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 84/498 (16%), Positives = 171/498 (34%), Gaps = 40/498 (8%)

Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
           F + S G++   NP    +  Y+  + I      STL       +      +        
Sbjct: 29  FLITSEGDVASWNPGGTRIEGYQLEEIIGRN--FSTLYTDEDRGNGVPDAVLESVLQRGR 86

Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
             +   R    +         + +     +   E      I  +  + R           
Sbjct: 87  HESEGWR----RQKDGTHFWASVVTTGLRDPRGEFRGAVQIVRDVGEKRRAHEAAIESER 142

Query: 453 QLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
           +   +++  +D  I +++ EG + + N    ++ GY  ++I+   F+ F +    +    
Sbjct: 143 RFRLLVQGVTDYAIFMLSPEGYVTNWNSGARRIKGYSEQEIIGSHFSRFYKPEDVAAGKP 202

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQE 567
               + +       E       ++       ++I  +       +       D++E +Q 
Sbjct: 203 Q-RGLETAAREGRFEAEGWRVRRDGTTFWAHVVIHAIRDDEGTLIGFAKVTRDVTERRQA 261

Query: 568 KNKLSHAKKIAEKES--SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
              L   +    +             V+H+    L  + G  E+++N+      +   +E
Sbjct: 262 SEMLEQTRAALFQAQKMEAIGKLTGGVAHDFNNVLQVLRGNLELLENRHRR---DNWSVE 318

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
              +   +      + + LL   + ++    L    V+L   V  A+  +      + + 
Sbjct: 319 RLAHAIDAVERGAKLASQLLAFGRRQA----LRPVVVNLAAMVR-AMDSMLARTLGETVS 373

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT--------------H 731
           + T  A  +   L D   ++ + LN+  NA    P+GG++ +                  
Sbjct: 374 VETVVAAGLWNTLVDPHQLENVLLNLAINARDAMPTGGRLTLELANAMLDDRYVGALSDV 433

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
            + + V+L V DTGVGM    +E+A  PF          G GTGLGL +A  +V  + G 
Sbjct: 434 PAGQYVMLAVTDTGVGMPPDVVERAFDPFFTTKP----EGLGTGLGLSMAYGLVKQSGGH 489

Query: 792 FYIFSTPAKGTLIEIIFP 809
             I+S    GT + I  P
Sbjct: 490 IRIYSELGHGTTVRIYLP 507



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/250 (10%), Positives = 68/250 (27%), Gaps = 14/250 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI---DPNNHIGDLLKRQNT 142
            + I + G +   +    +  G    ++IG     +          P+  +  +L+R   
Sbjct: 28  VFLITSEGDVASWNPGGTRIEGYQLEEIIGRNFSTLYTDEDRGNGVPDAVLESVLQRGRH 87

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
              +      +GT+ +  +    L       EF G     IV                ++
Sbjct: 88  ES-EGWRRQKDGTHFWASVVTTGL--RDPRGEFRGA--VQIVRDVGEKRRAHEAAIESER 142

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL---RMKNKVSSLTEYYAHKDDVLKTEK- 258
           +F  L +    ++          +  +          + ++        +K + +   K 
Sbjct: 143 RFRLLVQGVTDYAIFMLSPEGYVTNWNSGARRIKGYSEQEIIGSHFSRFYKPEDVAAGKP 202

Query: 259 -YPLLTSEESSLPEQEDFH-TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
              L T+      E E +    +   +        ++++      +       +      
Sbjct: 203 QRGLETAAREGRFEAEGWRVRRDGTTFWAHVVIHAIRDDEGTLIGFAKVTRDVTERRQAS 262

Query: 317 EGENLTPETV 326
           E    T   +
Sbjct: 263 EMLEQTRAAL 272



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/260 (8%), Positives = 59/260 (22%), Gaps = 18/260 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK---RQNT 142
            + +   GY+   +    +  G    ++IG           +         L+   R+  
Sbjct: 156 IFMLSPEGYVTNWNSGARRIKGYSEQEIIGSHFSRFYKPEDV-AAGKPQRGLETAAREGR 214

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
           +  +      +GT  +  + + A  I        GF    +            + ++   
Sbjct: 215 FEAEGWRVRRDGTTFWAHVVIHA--IRDDEGTLIGFAK--VTRDVTERRQASEMLEQTRA 270

Query: 203 KFSHLHEIKKGHSSVEKEKYD-------IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255
                 +++          +D       +        +   ++  S     +A       
Sbjct: 271 ALFQAQKMEAIGKLTGGVAHDFNNVLQVLRGNLELLENRHRRDNWSVERLAHAIDAVERG 330

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
            +    L +       +     +                 +      ++     +L    
Sbjct: 331 AKLASQLLAFGRRQALRPVVVNLAAMVRAMDSMLARTLGETVSVETVVAAGLWNTLVDPH 390

Query: 316 DEGENLTPETV---DKCPIP 332
                L    +   D  P  
Sbjct: 391 QLENVLLNLAINARDAMPTG 410



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/131 (14%), Positives = 44/131 (33%), Gaps = 9/131 (6%)

Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP--SVMNHYLTEILSLDLR 522
           + +I  EG + S N   +++ GY +E+I+ + F+           V +  L  +L     
Sbjct: 28  VFLITSEGDVASWNPGGTRIEGYQLEEIIGRNFSTLYTDEDRGNGVPDAVLESVLQRGRH 87

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNKLSHAKKIA 578
              E       K+       ++   L             + D+ E ++       +++  
Sbjct: 88  ---ESEGWRRQKDGTHFWASVVTTGLRDPRGEFRGAVQIVRDVGEKRRAHEAAIESERRF 144

Query: 579 EKESSHKSDFL 589
                  +D+ 
Sbjct: 145 RLLVQGVTDYA 155


>gi|28950195|emb|CAD71062.1| related to histidine kinase tcsA protein [Neurospora crassa]
          Length = 922

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 105/553 (18%), Positives = 206/553 (37%), Gaps = 30/553 (5%)

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
           +         +  +         T Q++  ++     H       A  D          D
Sbjct: 64  ASASTPSTQAMEEDHAWSVATRTTTQSSIDDTVTLQRHVPPTHPFAAPDMSL-----IFD 118

Query: 328 KCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
             P+P  + S    +   +  F         D I             ++ +  A K  ++
Sbjct: 119 FSPVPLLLLSSSCCITRVSKRFCQDWHVTEEDCIGK---FLLPFLESQIRETGASKSRLI 175

Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
             +    +AA +   +     +++                               ++  +
Sbjct: 176 AEAVDDAVAARSERTSKAITVKSAFTCRARVIPIFRDAELVSIYLEWHERPSSEVLDNEQ 235

Query: 447 ME---IEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
           ++           +++AT D  I +++ +G I + N     L GY  E+I+ K F++F  
Sbjct: 236 VQPGLSTDEAFRILVQATKDYAIFLLDTKGHIATWNTGAQLLKGYTREEIIGKHFSIFYG 295

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMH 559
           +    +    +   + L   +  E       K+       ++I  +  +     +     
Sbjct: 296 KEDLDIKKPDMELDICLREGRV-EDEGWRYKKDGTRFWANVVITAVYKNGVHVGFGKVTR 354

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           D++E K  +++L       E+    KSDFLA +SHEIRTP+  ++    ++ +       
Sbjct: 355 DLTERKASESRLI---AAYEESEKLKSDFLANMSHEIRTPMHGMLSACALLLDSPL---- 407

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
             R  +  N +D SG ++L ++ND+LD SK+ SG  ++  + V +   ++  +  VQ   
Sbjct: 408 TERQRDIVNIMDESGQILLQVINDILDYSKLASGSFSVSSDVVGVASIITSVVRAVQTTL 467

Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEV 737
               +      A N+P+ +  D    +QI  NI+ NA  FT  G  ++  S     N+  
Sbjct: 468 PPA-VHFELFLAPNLPKSVQGDPLRYRQIVQNIVGNAAKFTDKGSIRVKASVDSEDNDSY 526

Query: 738 IL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            +   V DTG+G+          PF Q   +   R +GTGLGL +AK++ +   G+    
Sbjct: 527 TILTEVIDTGIGIRESASASLFTPFSQFDLTTTKRYKGTGLGLSIAKSLAELMGGRIGYR 586

Query: 796 STPAK-GTLIEII 807
             P + G++    
Sbjct: 587 PNPERHGSVFWFT 599



 Score = 41.6 bits (96), Expect = 0.59,   Method: Composition-based stats.
 Identities = 17/136 (12%), Positives = 40/136 (29%), Gaps = 9/136 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL--LKRQNTW 143
            + +D  G++   +       G    ++IG           +D      +L    R+   
Sbjct: 258 IFLLDTKGHIATWNTGAQLLKGYTREEIIGKHFSIFYGKEDLDIKKPDMELDICLREGRV 317

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFG-IVHVNRVDNDPRALGKRLDK 202
             +   +  +GT  +  + + A+     +       GFG +           +      +
Sbjct: 318 EDEGWRYKKDGTRFWANVVITAVYKNGVH------VGFGKVTRDLTERKASESRLIAAYE 371

Query: 203 KFSHLHEIKKGHSSVE 218
           +   L      + S E
Sbjct: 372 ESEKLKSDFLANMSHE 387


>gi|91790035|ref|YP_550987.1| multi-sensor signal transduction histidine kinase [Polaromonas sp.
            JS666]
 gi|91699260|gb|ABE46089.1| multi-sensor signal transduction histidine kinase [Polaromonas sp.
            JS666]
          Length = 1562

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 101/788 (12%), Positives = 223/788 (28%), Gaps = 93/788 (11%)

Query: 94   YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGKTTLWPI 152
             +  +++   +  G    +++G     +          + IG  L+       +   +  
Sbjct: 790  RIVFVNDAFVRRTGYSREEVLGKTPRILQGPQTQRAELDRIGAALRAWQPVQAELVNYTK 849

Query: 153  EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212
             G   ++ +D+  +P+      F+ +    +          +      +++++ L E   
Sbjct: 850  SGEPFWLDLDI--VPVADSQGGFTHW--VAVERDITQRKLAQQALVESEQRYAALFEGAP 905

Query: 213  GHSSVEK---EKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE--- 266
                +       +   +      +   + ++ S+T +    D   +  K  + +      
Sbjct: 906  VPMWIVDDQTHAFLAVNGACTERYGYTREELLSMTIFDIRSDIEAQRLKAEIASGAHKPV 965

Query: 267  ----------SSLPEQEDFHTINLNQYTKKQYFGT---------------LQNNSKESFE 301
                      + L  +     I       +                    L    + +  
Sbjct: 966  NRRVHRSRDGADLDVETVSRKIQYEGRPARLVVAFDVSAQVKAEKDAQEYLFTLQRAADA 1025

Query: 302  YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY------------------------- 336
              +   H +L     E        +        +                          
Sbjct: 1026 ASAITWHQTLDGTMQEVAEQVRGVIGTHQAAVSLTINSDWAQAVHALSLSEKYAAYRDLM 1085

Query: 337  ---SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393
                   ++          +    +             A K         V L       
Sbjct: 1086 EPPDGTGIYAVVCEANRSMRLTQAELEAHPRWRGFGSHAGKHPAMRGWLAVPLVARSGKN 1145

Query: 394  IAA----SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR--KM 447
            +                 E            A +  + + + G     ++ ++ +R   +
Sbjct: 1146 MGLLQLSDKYEGEFTQQDEYVAMELAQLASIAIENVQLLEEVGRLNAGLEQKVAERTAAL 1205

Query: 448  EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
              +     ++ E     I   +  G     N+A   L G    D     +   +      
Sbjct: 1206 TRQEALFRALAERAPQVIWTADPSGAPTYYNQAWFDLVGGRFSDWAGSRWLTAIHPEDLP 1265

Query: 508  VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISE 563
             +       L+   R   E I     ++    ++      +         +     DI+E
Sbjct: 1266 EVQASWQ--LASASRSQYENIRRLRARDGSYHTMSSRATPVLDERGELAYWVGIDADITE 1323

Query: 564  WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             K  +  L          +     F   VSH++R+PL  I GFS  + +++     N + 
Sbjct: 1324 IKTIEAAL-------RLSNQELEAFSYSVSHDLRSPLNTIDGFS-RLLSKQLPGHVNEKS 1375

Query: 624  IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
              Y   I      +  ++ DLL ++++   +  L  E V L       +   Q    E+R
Sbjct: 1376 RHYLARIQTGVAQMGQLIEDLLSLAQV--SRAQLRAELVDLSALSRRILGEWQARDPERR 1433

Query: 684  ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS--GGQIIISTTHTSNEEVILRV 741
            +++      +  +   D R V  +  N+LSNA  FT    G  I ++    +  + +  V
Sbjct: 1434 VVVHVE---SGLQAHGDSRLVGVVMENLLSNAWKFTSRKVGASISVTQQPDAAGQPVFVV 1490

Query: 742  RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            RD G G      +K   PF ++  +      GTG+GL  A  ++  + G+ +  S P  G
Sbjct: 1491 RDNGAGFDMAYADKLFNPFQRLHAA--SEFAGTGIGLASASRVIGRHGGRLWAQSEPGCG 1548

Query: 802  TLIEIIFP 809
                   P
Sbjct: 1549 AAFFFTLP 1556



 Score =  107 bits (267), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 54/523 (10%), Positives = 129/523 (24%), Gaps = 43/523 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNY-AFKMIGMRL----------CDVSDILHIDPNNHIGDLL 137
           +DA G    ++E   +      A  ++               D        P   +   L
Sbjct: 389 VDAFGRPLLVNEAASRLFVLAQAPTVLSAEWPQHLGLYLPGADTLYAFDQLP---LYKAL 445

Query: 138 KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG 197
           + Q+       +         + I  +  P++ R+        F  +         RA  
Sbjct: 446 QGQSGGPQHILVRNAAVPAGRL-ISCSYRPMHGRDGLVGALMVFADITQLEQLQLERAKS 504

Query: 198 KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA--------- 248
               ++        +    +   + D  + Q             +               
Sbjct: 505 YAELRETQRKLLEAQRMGRIGNWESDFRTGQLWWSEEVYALYGLAPGTVELCSDMAMSMM 564

Query: 249 -HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
             +D     + Y     E +    +    T   +     Q      + + ++        
Sbjct: 565 HPEDRARYVQGYERSVGERAEYGVEFRVITPAGDVRWMHQLCKPHFDETGQAIYRTGVIQ 624

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
             +     +     T + + +      V     +             +  +    A   +
Sbjct: 625 DITARKQSELALVHTTDLLRRTGEMAMVGGWELVLDGMRLSSSEQVLRIHELEPGAPWGA 684

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
                    +        +  +          L  I               +   Q  + 
Sbjct: 685 EDAINSYPPEARKTFIAAVNAATGHGTPWDLELPMITQTGRRIWV--RTQGQAFMQDGKV 742

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI-----INREG-IILSTNRAV 481
           +   G   +      ++  + +    L S +   +D + I     +   G  I+  N A 
Sbjct: 743 VRLAGALQDITAQHESREHLRL----LESSISRLNDMVVITEAVPLGEPGPRIVFVNDAF 798

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
            +  GY  E++L K   +     T       +   L     Q ++   +  TK  +   L
Sbjct: 799 VRRTGYSREEVLGKTPRILQGPQTQRAELDRIGAAL--RAWQPVQAELVNYTKSGEPFWL 856

Query: 542 RIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEK 580
            + I  +  S      +     DI++ K  +  L  +++    
Sbjct: 857 DLDIVPVADSQGGFTHWVAVERDITQRKLAQQALVESEQRYAA 899



 Score = 65.4 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 40/307 (13%), Positives = 70/307 (22%), Gaps = 29/307 (9%)

Query: 55   TDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI 114
                Q+    T  L  +         R  +  W  D  G     ++     +G       
Sbjct: 1192 AGLEQKVAERTAALTRQEALFRALAERAPQVIWTADPSGAPTYYNQAWFDLVGGRFSDWA 1251

Query: 115  GMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNRE 174
            G R         + P       L   +    +           Y  +   A P+     E
Sbjct: 1252 GSRWLTAIHPEDL-PEVQASWQLASASRSQYENIRRLRARDGSYHTMSSRATPVLDERGE 1310

Query: 175  FSGFRGFGIVHVNRVDNDPRALGK----RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP 230
                   GI           A  +     L+     +    +   +       + S+Q P
Sbjct: 1311 L--AYWVGIDADITEIKTIEAALRLSNQELEAFSYSVSHDLRSPLNTIDGFSRLLSKQLP 1368

Query: 231  ---------------PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDF 275
                               +M   +  L          L+ E   L       L E   +
Sbjct: 1369 GHVNEKSRHYLARIQTGVAQMGQLIEDLLSLAQVSRAQLRAELVDLSALSRRILGE---W 1425

Query: 276  HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI---- 331
               +  +         LQ +       +   N  S +  F   +     +V + P     
Sbjct: 1426 QARDPERRVVVHVESGLQAHGDSRLVGVVMENLLSNAWKFTSRKVGASISVTQQPDAAGQ 1485

Query: 332  PFFVYSH 338
            P FV   
Sbjct: 1486 PVFVVRD 1492



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/300 (10%), Positives = 71/300 (23%), Gaps = 28/300 (9%)

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIA 363
            ++  +  A   +       TV+        V + G     N +   L        +  A
Sbjct: 358 EQDLEAELARSQQSRATLDLTVNSMQEGLIAVDAFGRPLLVNEAASRLFVLAQAPTVLSA 417

Query: 364 GGLSTL---LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
                L   L            P+      ++       +          ++ ++ P   
Sbjct: 418 EWPQHLGLYLPGADTLYAFDQLPLYKALQGQSGGPQHILVRNAAVPAGRLISCSYRPMHG 477

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIE-VMQLCSILEATSDGIAIINREGII----- 474
            +     +       +    ++ + K   E       +LEA         R G I     
Sbjct: 478 RDGLVGALMVFADITQLEQLQLERAKSYAELRETQRKLLEA--------QRMGRIGNWES 529

Query: 475 ------LSTNRAVSKLFGYPVE--DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
                 L  +  V  L+G      ++        +     +         +       +E
Sbjct: 530 DFRTGQLWWSEEVYALYGLAPGTVELCSDMAMSMMHPEDRARYVQGYERSVGERAEYGVE 589

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSCYS--LTMHDISEWKQEKNKLSHAKKIAEKESSH 584
              +    + + +                    + DI+  KQ +  L H   +  +    
Sbjct: 590 FRVITPAGDVRWMHQLCKPHFDETGQAIYRTGVIQDITARKQSELALVHTTDLLRRTGEM 649



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/428 (9%), Positives = 102/428 (23%), Gaps = 28/428 (6%)

Query: 175 FSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL 234
             G  G+   H       P  LG R   + +           +        S     P L
Sbjct: 103 IVGVDGYARCHGVDSS-QPAYLGDRDYFRAAVTRRSFVAGDYILGRLSGKPSITFALPVL 161

Query: 235 RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT--- 291
               +V  +        ++ K+     L    +++   +    +  ++       G    
Sbjct: 162 GADGQVLRVVYVAVDLTEMAKSVAAIQLPPG-AAVGIHDRNGVLLASKPALPIKVGQKVA 220

Query: 292 ---LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSF 348
              L+   +     +      S                    +   +     +       
Sbjct: 221 SVVLREAVQAKSTGVREGKDASGELRLWAFMPSGASADSAFFVAISINRDLVVGPGQRQL 280

Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
            L     ++     A     +     +     I            +     +H++    E
Sbjct: 281 GLELAVLALVAFLGAWIAWMMGGRTIVKPTREILDATRLLQKGQ-LDVRIPMHSVHDAGE 339

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468
            +                N     ++  + D      + +     L   + +  +G+  +
Sbjct: 340 FTKI----------ADGFNAMAESLQQREQDLEAELARSQQSRATLDLTVNSMQEGLIAV 389

Query: 469 NREGIILSTNRAVSKLFGYPVEDI-----LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
           +  G  L  N A S+LF              +   ++L           L    +L  + 
Sbjct: 390 DAFGRPLLVNEAASRLFVLAQAPTVLSAEWPQHLGLYLPGADTLYAFDQLPLYKALQGQS 449

Query: 524 TLEKITLGS---TKEEKLLSLRIIIKKLPFS-SCYSLTMHDISEWKQEKNKLSHAKKIAE 579
              +  L         +L+S                +   DI++ +Q + + + +     
Sbjct: 450 GGPQHILVRNAAVPAGRLISCSYRPMHGRDGLVGALMVFADITQLEQLQLERAKSYAELR 509

Query: 580 KESSHKSD 587
           +      +
Sbjct: 510 ETQRKLLE 517


>gi|110642927|ref|YP_670657.1| hybrid sensory histidine kinase BarA [Escherichia coli 536]
 gi|191171166|ref|ZP_03032716.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           F11]
 gi|300976311|ref|ZP_07173375.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 200-1]
 gi|110344519|gb|ABG70756.1| sensor protein BarA [Escherichia coli 536]
 gi|190908466|gb|EDV68055.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           F11]
 gi|300308553|gb|EFJ63073.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 200-1]
 gi|324015532|gb|EGB84751.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 60-1]
          Length = 918

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 85/333 (25%), Positives = 153/333 (45%), Gaps = 17/333 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +FG+ +   +  P    +               L   +   +             +++ +
Sbjct: 193 IFGWRLMRDVTGPIRNMVNTVDR-----IRRGQLDSRVEGFMLGELDMLKNGINSMAMSL 247

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 248 AAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTP 307

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+ +       P       ++ N I+RS N +L I+ND+LD SK+E+GK+ L  
Sbjct: 308 LNGVIGFTRLTLKTELTPT----QRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILES 363

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P  L   + E ++L+   +++K + +  +  +++P  ++ D   ++QI  N++ NAI F
Sbjct: 364 IPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKF 423

Query: 719 TPSGGQ-IIISTTHTSNEEVILRV--RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T +G   I++     SN +V + V  RDTG+G+   +  +  + F Q   S   R  GTG
Sbjct: 424 TENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTG 483

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           LGL + + +V+   G     S P +G+      
Sbjct: 484 LGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516


>gi|332999537|gb|EGK19122.1| signal transduction histidine-protein kinase barA [Shigella
           flexneri VA-6]
          Length = 918

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 85/333 (25%), Positives = 153/333 (45%), Gaps = 17/333 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +FG+ +   +  P    +               L   +   +             +++ +
Sbjct: 193 IFGWRLMRDVTGPIRNMVNTVDR-----IRRGQLDSRVEGFMLGELDMLKNGINSMAMSL 247

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 248 AAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTP 307

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+ +       P       ++ N I+RS N +L I+ND+LD SK+E+GK+ L  
Sbjct: 308 LNGVIGFTRLTLKTELTPT----QRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILES 363

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P  L   + E ++L+   +++K + +  +  +++P  ++ D   ++QI  N++ NAI F
Sbjct: 364 IPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKF 423

Query: 719 TPSGGQ-IIISTTHTSNEEVILRV--RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T +G   I++     SN +V + V  RDTG+G+   +  +  + F Q   S   R  GTG
Sbjct: 424 TENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTG 483

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           LGL + + +V+   G     S P +G+      
Sbjct: 484 LGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516


>gi|317480271|ref|ZP_07939376.1| hsp90-like protein [Bacteroides sp. 4_1_36]
 gi|316903564|gb|EFV25413.1| hsp90-like protein [Bacteroides sp. 4_1_36]
          Length = 867

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 95/534 (17%), Positives = 180/534 (33%), Gaps = 29/534 (5%)

Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANP 346
                + N +ES + +  +    +     E  +               Y     + + N 
Sbjct: 347 VAWLFRANRRESRKRIHAQTRLLIQHRLVEQRDEFDNIFCSIRDGLITYDTDLRIHFVNR 406

Query: 347 SFLLLTKYKSV---DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403
             L +    S              ++       +N     +   R+ +  I+   +    
Sbjct: 407 PLLQMLGLSSETYTSRFYEGQMAGSIFRIYMNGENILQDLLKKVRTGKRPISIPEKAFMQ 466

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
           + ++     ++                        +        E++       +E +S 
Sbjct: 467 ENHQGTYFPVSGEVVPIFANEKMTGMAIVCRNISEE--------EMQRRFFNMAVEESSI 518

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVE-DILRKP-FTVFLEQNTPSVMNHYLTEILSLDL 521
                N           + + FGY  + D+L +      +              IL L  
Sbjct: 519 YPWQYNMHMNRFHFPGGLLRRFGYTDDTDLLARDEMDTLIHPEDLLHTRRNFDAIL-LGN 577

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPF-----SSCYSLTMHDISEWKQEKNKLSHAKK 576
                      + +                              I  +K  +  L  A+ 
Sbjct: 578 EINSRMSFRLKSADGSYEWWEFRSTAYDGLTVDTPYMVLGVCQSIQRYKDTEEALIAARD 637

Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
            A +    KS FLA +SHEIRTPL AI+GFS+++K+            ++   I+ +  L
Sbjct: 638 RALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLKD--LDAFSPEEVKQFVETININCTL 695

Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696
           +L ++ND+LD+S+IESG M+  F   +L   + E     +L      + +R        +
Sbjct: 696 LLALINDILDLSRIESGTMDFKFGAFNLAFIMQEVHESQRLSMPR-DVELRIEIPEGEDK 754

Query: 697 -ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755
            ++ D   +KQ+  N+++NA  FT +G  I             + V DTG G++    + 
Sbjct: 755 LVITDSVRLKQVVNNLINNAKKFTVTGS-ITFGYVTNREGYTTIFVEDTGSGISEDAQKH 813

Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             + F +  +      +G GLGL + + +VD   G   + S   KGT  E++ P
Sbjct: 814 IFERFYKEDSFT----QGAGLGLSICQTIVDRLHGSISVSSELGKGTRFEVVIP 863


>gi|253689753|ref|YP_003018943.1| Hpt sensor hybrid histidine kinase [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251756331|gb|ACT14407.1| Hpt sensor hybrid histidine kinase [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 931

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 95/344 (27%), Positives = 155/344 (45%), Gaps = 19/344 (5%)

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
           F Y +   +  P    +       ++      L   +   +             +++ + 
Sbjct: 194 FAYRLMRDVTTPIRNMV-----DTVDRIRRGQLDSRVEGYMLGELDMLKNGINSMAMSLT 248

Query: 545 IKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
                         +D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTPL
Sbjct: 249 AYHEEMQQNIDQATYDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPL 308

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
             +IGF+     Q      N    +Y   I+RS N +L+I+ND+LD SK+E+GK+ L   
Sbjct: 309 NGVIGFT----RQTLKTPLNTTQTDYLLTIERSANNLLNIINDVLDFSKLEAGKLVLEDI 364

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFT 719
           P SL  A+ + + L+   A+EK + +  S  N++P   + D   ++QI  N+L NAI FT
Sbjct: 365 PFSLHNALDDVVMLLAHTAHEKGLELTLSIQNDVPEQFVGDPLRIQQIITNLLGNAIKFT 424

Query: 720 PSGGQ-IIISTTHTSNEEVILRV--RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
             G   I +      + +V L V  RDTG+G+   +  +  + F Q   S   R  GTGL
Sbjct: 425 EQGNIDIRVEKRRQEHHQVQLEVQIRDTGIGIAELQQSQLFQAFRQADTSISRRHGGTGL 484

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTL--IEIIFPLYDTSHPHD 818
           GL + + +V    G     S   KG+     I  PL   + P +
Sbjct: 485 GLVITQRLVKEMGGDISFQSQLNKGSTFWFHITLPLNPHAIPTE 528


>gi|196035114|ref|ZP_03102520.1| sensor histidine kinase/response regulator [Bacillus cereus W]
 gi|195992178|gb|EDX56140.1| sensor histidine kinase/response regulator [Bacillus cereus W]
          Length = 896

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 79/338 (23%), Positives = 147/338 (43%), Gaps = 18/338 (5%)

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            +D++ +            +    +  +L      T E        + +   L++  ++L
Sbjct: 395 HQDLIHQTVDNLGLTIHSIMGRMRIQTLLHESQAMTEELQVQSEELQTQAEELQMQAEEL 454

Query: 549 PFSSCYSLTMHDISEWKQEKN-----KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
             ++    +  + +E K         +L        + S +KS+FLA +SHE+RTPL +I
Sbjct: 455 RTTNEQLESRTEEAEQKTADLQITKLELEEKASELLRSSKYKSEFLANMSHELRTPLNSI 514

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +  SE++K      L +    E A  I  SG  +L ++ND+LD+SK+E+GK+++ FE  +
Sbjct: 515 LLLSEMLKENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIFEATN 573

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSG 722
           + +  +         A +K +      ++ IP +   D + ++QI  N+LSNA  FT  G
Sbjct: 574 ISDMAASMHQNFLHIAAQKNVEFTVEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKG 633

Query: 723 GQ------IIISTTHTS-----NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
                   I  S           + + + V+DTG+G+   + +   + F Q   +   + 
Sbjct: 634 SVSLHFDSIETSNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGATIRKY 693

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            GTGLGL + K       G   + S   +G+   +  P
Sbjct: 694 GGTGLGLSICKEFARLLGGWITLQSHVGEGSTFTVYIP 731


>gi|328952178|ref|YP_004369512.1| PAS/PAC sensor signal transduction histidine kinase [Desulfobacca
           acetoxidans DSM 11109]
 gi|328452502|gb|AEB08331.1| PAS/PAC sensor signal transduction histidine kinase [Desulfobacca
           acetoxidans DSM 11109]
          Length = 465

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 77/360 (21%), Positives = 162/360 (45%), Gaps = 23/360 (6%)

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           I+++ +D I  IN + +I+  N+  + +FG+  ++ +     + +          Y+   
Sbjct: 117 IIDSAADAIITINEDHLIVGYNQGAATIFGFDRDEAIGADLNIIIPPPYKEKHREYVRRY 176

Query: 517 LSLDLRQTLEKITLGS--TKEEKLLSLRII--IKKLPFSSCYSLTMHDISEWKQEKNKLS 572
           ++      + K    +   K  +   + I   +  +  +  ++  + D+SE+   + +L 
Sbjct: 177 IATRKPHLIGKHVQLNAIRKNGEEFPMSISFSVADIGGNLYFTGIVRDMSEYVAMEERLR 236

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
            ++++A   ++     ++ + HEI+ PL  I GF++ +   + G L      +    I  
Sbjct: 237 QSERLAAVGNT-----ISHIVHEIKNPLMIIGGFAQQLL--KAGTLDTKGLQK-LAIIAE 288

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
             + +  ++ ++ D S+  +    L  +   +   + E I L      EK I +     +
Sbjct: 289 EVSRLETLMAEMKDYSRPPA----LKRQSGEIAGLLQEVIQLYSENLKEKNITLTLEPPD 344

Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752
            +P    D + +KQ+ +N++ NA    PSGG+I I T H       + V DTG GMT+  
Sbjct: 345 PMPLCSLDYQQLKQVLMNLIKNASEAMPSGGRITI-TAHRRPPYFEIAVADTGEGMTSDV 403

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
           +E    P+         + +G+GLGL +++ +V A+ G   + S P KG++  I  PL +
Sbjct: 404 VEHIFTPYYTT------KTKGSGLGLAISRNIVQAHNGNLEVVSQPGKGSVFTIKLPLVE 457



 Score = 39.6 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 23/213 (10%), Positives = 55/213 (25%), Gaps = 14/213 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTW-YGK 146
           I+    +   ++      G    + IG  L  +    + + +   +   +  +     GK
Sbjct: 128 INEDHLIVGYNQGAATIFGFDRDEAIGADLNIIIPPPYKEKHREYVRRYIATRKPHLIGK 187

Query: 147 TTLW---PIEGTNLYVPIDLAALPIYSRNREFSGFRGF-GIVHVNRVDNDPRALGKRLDK 202
                     G    + I  +         +  G   F GIV             ++ ++
Sbjct: 188 HVQLNAIRKNGEEFPMSISFSVA-------DIGGNLYFTGIVRDMSEYVAMEERLRQSER 240

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL-TEYYAHKDDVLKTEKYPL 261
             +  + I      ++     I             +          A +   L+T    +
Sbjct: 241 LAAVGNTISHIVHEIKNPLMIIGGFAQQLLKAGTLDTKGLQKLAIIAEEVSRLETLMAEM 300

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294
                    +++      L Q   + Y   L+ 
Sbjct: 301 KDYSRPPALKRQSGEIAGLLQEVIQLYSENLKE 333


>gi|225389641|ref|ZP_03759365.1| hypothetical protein CLOSTASPAR_03389 [Clostridium asparagiforme DSM
            15981]
 gi|225044297|gb|EEG54543.1| hypothetical protein CLOSTASPAR_03389 [Clostridium asparagiforme DSM
            15981]
          Length = 1430

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 115/762 (15%), Positives = 244/762 (32%), Gaps = 54/762 (7%)

Query: 88   NIDAHGYLK--EISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK---RQNT 142
             +DA G ++   +SE           +   +   D    +H +   ++   +      + 
Sbjct: 538  RLDAQGKMEPEFMSEGFAAMTEMTMDQAWELYRRDAMAGVHPEDRGYVNRQMAEYIAGDE 597

Query: 143  WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
             + +      +G   YV +      I S   E    R + +               R   
Sbjct: 598  NHCEIVYRLRKGGGGYVWVKNTLSLIESEAGE---ARVYSVYRDMT-REREEQSRLRQQY 653

Query: 203  KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK-------------VSSLTEYYAH 249
            K   +   +          +   +Q      +   +               S L+     
Sbjct: 654  KDLIMQHYQTQGPDALVLGHCNITQNRILEIIDYTDSNLLGTFGSVREDFFSGLSSLVVD 713

Query: 250  KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
            +++  K     L      +    +    +       K+  G     +          +  
Sbjct: 714  EEERRKFLDIYLNKPALEAFQRGDVERRLECFMRPPKEETGRYVQVNMNLVATPDSGDVT 773

Query: 310  SLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
             +    D         VD+         +  +   +            +           
Sbjct: 774  GILTVTDITRR---TIVDRIMKQISAKGYDFISDVDLRQDRYYLLSGDELDSGIRTSEGS 830

Query: 370  LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP---------FEK 420
                                 R  +     L  ++     +LA + +             
Sbjct: 831  YSRRVEDVLLHEVVPRDRARMREALNPEYILKRLERESSYTLAFSMVDLNGCIRTKNITI 890

Query: 421  ANQFPENMPQNGIEPEDVDTRINKRKMEIEVM---QLCSILEATSDGIAIINREGIILST 477
            +              +  ++   ++ M   +    +L   +  +   + +  RE ++ + 
Sbjct: 891  SAVDLRLYRVCVARADITESVREQQGMLHVIAYTFELAGFINISQSSLTLYTRETVLENL 950

Query: 478  NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST-KEE 536
                 + +   V   +    +   ++         +      +     + +   +   +E
Sbjct: 951  PPYFVEQYSDAVSRFVDHHASKADQEEARRQFRIEVMREKLEEKPGGYDFLFSCNENGQE 1010

Query: 537  KLLSLRIIIKKLPFSSCYSLTMHDISEW----KQEKNKLSHAKKIAEKESSHKSDFLARV 592
            +   + ++   +   +   L   D+++     ++ K +L +A   AE+ +  KSDFL+ +
Sbjct: 1011 RYKQVNVMWGDVNHGT-ICLVRADVTDMLAAERRTKRELENALSRAEEANRAKSDFLSTM 1069

Query: 593  SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
            SH+IRTP+ AI+G +  +     G     R  +    I  S   +L ++ND+LD+SKIES
Sbjct: 1070 SHDIRTPMNAIMGMTA-LAMAHLG--DQERVTDCLQKISISSRHLLSLINDILDMSKIES 1126

Query: 653  GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNI 711
             ++ L+   +S+ E + +  +++   A    +         + P    D   + QI +NI
Sbjct: 1127 SQITLNRMRISIREMLGQLSAIMSSQARSAGLTFSIQAGEIVHPCFYGDALRINQILINI 1186

Query: 712  LSNAIHFTPSGGQIIISTTH-----TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
            LSNA+ +TP GG +                    V DTGVGMT   L    +PF +  + 
Sbjct: 1187 LSNAVKYTPEGGCVDFQAEEIPPVGRDCARYRFTVSDTGVGMTEEFLNHVFEPFTR--SR 1244

Query: 767  QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            Q  R EGTGLGL + K +V+   G   + S   +GT+ ++  
Sbjct: 1245 QTTRVEGTGLGLSITKGLVNLMGGAISVESVVHQGTVFQVEL 1286



 Score = 68.5 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 49/509 (9%), Positives = 118/509 (23%), Gaps = 62/509 (12%)

Query: 96  KEISEELPKTIGNYAFKMIGMRLCDVS-DILHIDPNNHIGDLLKRQNTWYGKTTLWPIEG 154
              S+ +P+  G  A +   +   D +      D    +   L+   T    T  +  + 
Sbjct: 184 VYFSDGVPELSGYTAEEYRELAKGDAANMTYWEDTAEVVSRALEVIRTKGLATMEFRKQH 243

Query: 155 TNLY-VPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
            + + V +      I   +  F       + H      + R     L           + 
Sbjct: 244 RDGHIVWVRAQIKWIGEEDG-FPLLH--CVFHNITDLKEARQEMDHLVNSIPGGIASYQI 300

Query: 214 -----HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
                      +     S  +   + R+  +  ++   Y H  D +       L S E  
Sbjct: 301 EDGRFVLHYFSDGVMKLSGHTREEYGRLAGR-DAMNLVYEHDRDRVSAAARAALASGEV- 358

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
           L                      +   +     Y                  L       
Sbjct: 359 LDVSYRMRHKEGGLIWIHLNGRRIGPLADRPKFYAVFTG-------LSAENRLFQNLAGD 411

Query: 329 CPIPFFVYSHGN--LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
                +V    N  L Y N S                                 +     
Sbjct: 412 LADGIYVIEKENYDLLYVNES-------------------KRFFAD----GRERVGQKCY 448

Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTF-------IPFEKANQFPENMPQNGIEPEDVD 439
                            +        M             +   +        I  +   
Sbjct: 449 QALYGKDRPCEYCSLKTREPDGLEHEMIVPETGSFYSTSFRETDWNGIPAYVKIVRDVTG 508

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAI--INREGII--LSTNRAVSKLFGYP---VEDI 492
               +R+ E       ++L+    G+A+  ++ +G +     +   + +         ++
Sbjct: 509 AVELRREKERLAQYFETVLKNLPGGVAVVRLDAQGKMEPEFMSEGFAAMTEMTMDQAWEL 568

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
            R+     +       +N  + E ++ D     E +          + ++  +  +   +
Sbjct: 569 YRRDAMAGVHPEDRGYVNRQMAEYIAGDENH-CEIVYRLRKGGGGYVWVKNTLSLIESEA 627

Query: 553 C---YSLTMHDISEWKQEKNKLSHAKKIA 578
                     D++  ++E+++L    K  
Sbjct: 628 GEARVYSVYRDMTREREEQSRLRQQYKDL 656



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/213 (13%), Positives = 69/213 (32%), Gaps = 19/213 (8%)

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
                L++      V L   +   +   +    +  +       +           +   
Sbjct: 84  FCEQTLAEGVCSLSVELTLYNSQAVIHRSVFAVLALDGGEWRVKSLFVARSGGDGGQKER 143

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII--LSTNRAVSKLFGY 487
           + G+          +R++     +L  I+ A   G+AI         +  +  V +L GY
Sbjct: 144 EAGLSWL-------ERELAEANEELQDIINAIPGGVAIYKVSDRFETVYFSDGVPELSGY 196

Query: 488 PVEDIL----RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
             E+           +   ++T  V++  L  I +  L            ++  ++ +R 
Sbjct: 197 TAEEYRELAKGDAANMTYWEDTAEVVSRALEVIRTKGLATM---EFRKQHRDGHIVWVRA 253

Query: 544 IIKKLPFSSCY---SLTMHDISEWKQEKNKLSH 573
            IK +     +       H+I++ K+ + ++ H
Sbjct: 254 QIKWIGEEDGFPLLHCVFHNITDLKEARQEMDH 286


>gi|209523403|ref|ZP_03271958.1| PAS/PAC sensor signal transduction histidine kinase [Arthrospira
           maxima CS-328]
 gi|209496145|gb|EDZ96445.1| PAS/PAC sensor signal transduction histidine kinase [Arthrospira
           maxima CS-328]
          Length = 709

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 100/598 (16%), Positives = 195/598 (32%), Gaps = 84/598 (14%)

Query: 278 INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV-Y 336
           +   +   +     L        +Y       +     +           +      +  
Sbjct: 120 LTGREVWLETTIVPLMKTGATPDKYWVLTQDITERKEIELELTQLSWVASQTDNAVIICD 179

Query: 337 SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA 396
            HG + + N +F  +T Y   +     G          LSD   I  +      +     
Sbjct: 180 RHGKIEWVNEAFTWITGYTLEEV---KGLTPGSFLQGPLSDTETIHQI--RACLKEHKPY 234

Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
              L   + +      ++       +   +      IE +  D +  +  +    ++  S
Sbjct: 235 RGELINYKRHGSPY-WLSISITPIFDHQGDLTKFIAIETDISDRKKMEEALRQSEVRNRS 293

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           ++EA  D +  +NR+G+ L    +         +++L K       ++      HYL   
Sbjct: 294 LIEAIPDLMFRLNRDGMFLDYFPSKDDRV-TESKEVLGKTVEQVFSEDLAWWTRHYLELT 352

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKK 576
           L+    Q+ E +      EE   +      K          + DI++ K  +  L   ++
Sbjct: 353 LTSGQSQSGEYMLPF---EEGWRTYEARYVKSGDD-VVLAIVRDITDRKAIEAALLVEQQ 408

Query: 577 IAEKESSH-----------------------KSDFLARVSHEIRTPLTAIIGFSEVI--- 610
           + +++++                            +A V+HEI  PL  I G    +   
Sbjct: 409 LEKQKAAQLEKALDKLQRTQTQLIQAEKLSSLGQMVAGVAHEINNPLAFIHGNLIYLDTC 468

Query: 611 ---------KNQRFGPLGNPRYIEYANYI----------------DRSGNLVLDIVNDLL 645
                       ++ P   P   E    I                    + + +IV  L 
Sbjct: 469 IKDIQYMLCMYHKYYPEPLPELKEAVADIDVDFMLYDLPKALESMKLGTHRIQEIVTSLR 528

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF---ANNIPRILADLR 702
           + S+++  KM      V L E +   + ++Q     K     T+       +PR+     
Sbjct: 529 NFSRLDEAKMK----AVDLHEGIESTLLILQNRLKAKAEQGETNIIRDYGELPRVECHAS 584

Query: 703 SVKQIALNILSNAIHFT---PSGGQIIISTTHTSNEE------VILRVRDTGVGMTNYEL 753
            + Q+ +N++SNAI      P+  +I IST     E       V++ + D G G+     
Sbjct: 585 QINQVFMNLISNAIDALGNQPAPREIKISTRLELAEYEENMDMVVVEISDNGPGIPELVR 644

Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM-VDANMGKFYIFSTPAKGTLIEIIFPL 810
           ++   PF          G+GTGLGL ++  + V+ + GK    S   +GT   +  PL
Sbjct: 645 QQIFNPFFTTKP----VGKGTGLGLAISHQIVVEKHGGKIECISELGEGTKFIVSLPL 698



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/166 (14%), Positives = 57/166 (34%), Gaps = 8/166 (4%)

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
            P          +   T+    + + E+  L  ++  T+ G  + +  G ++  N    +
Sbjct: 12  EPLVAAYQRAVADLTKTKQQLHESQQELWDLGQVVNRTTPGAWV-DENGTLVEINEGFIE 70

Query: 484 LFGYPVEDILRK-PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
           +FGY  E ++ K    +  +          +  ++               T   + + L 
Sbjct: 71  VFGYGAEQLIGKLHPLLNSKCYNADFWEEKVWSVVRSG--GVWRGELQNCTLTGREVWLE 128

Query: 543 IIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
             I  L  +      Y +   DI+E K+ + +L+    +A +  + 
Sbjct: 129 TTIVPLMKTGATPDKYWVLTQDITERKEIELELTQLSWVASQTDNA 174


>gi|78358574|ref|YP_390023.1| histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans
           str. G20]
 gi|78220979|gb|ABB40328.1| histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans
           str. G20]
          Length = 410

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 89/400 (22%), Positives = 166/400 (41%), Gaps = 38/400 (9%)

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
              ++    + + + +++E +  +  +IL+  +D + +++ +  I+S N    +LF  P 
Sbjct: 21  FQELQQSIEELKESNKELEEQRRETAAILDGITDVMMVLSEDLRIISVNHVFMQLF--PD 78

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
            D   +    +   +            LS D   T+ + T       + +   ++   L 
Sbjct: 79  SDPHGQYCYKYFRHSHTPCRECPAFRSLSTD---TVCRETAIFRINGRNMQFEMVASPLK 135

Query: 550 F----SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
                     +   D++  K+ + K   A+K+A           A V+HEI  PLTA+ G
Sbjct: 136 SPYLPEHRVLIFKRDVTLEKEYQAKFYQAEKMAT-----MGVLAAGVAHEINNPLTAVTG 190

Query: 606 FSEVIKNQ--RFGPLGNPR----YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           F+E I+ +  +   L + +    + EY + I +      DIV  LL  S+  S      F
Sbjct: 191 FAEGIRRRLPKLRGLVDDQLFTDFQEYTDTILKECLRCQDIVQTLLTFSRPSSA----EF 246

Query: 660 EPVSLDEAVSEAISLVQLYANEK-RILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718
             +SL+  VSE + L+  +  +   I +  +    +P I  D   +KQ+ LN+L+NA+  
Sbjct: 247 SQLSLNSVVSETVWLLHNHFKKHHNIKVNLNLDETVPHIFGDEAQLKQVVLNLLTNALDS 306

Query: 719 TPS---------GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
                        G + + T         L V DTG G+    ++K  +PF    N    
Sbjct: 307 MSETGNKDRCYFSGVLAVETAPFGESGAKLIVSDTGCGIPPDNIDKLFEPFFTTKN---- 362

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            G+G G+GL    ++V  + G+  + ST  KG+   +  P
Sbjct: 363 VGKGIGIGLSTCYSIVRKHGGEITVTSTEGKGSQFTVTLP 402


>gi|127511840|ref|YP_001093037.1| PAS/PAC sensor hybrid histidine kinase [Shewanella loihica PV-4]
 gi|126637135|gb|ABO22778.1| PAS/PAC sensor hybrid histidine kinase [Shewanella loihica PV-4]
          Length = 919

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 113/638 (17%), Positives = 227/638 (35%), Gaps = 58/638 (9%)

Query: 215 SSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQED 274
                  Y +F         R   ++ +L +     D +L+   + L  +          
Sbjct: 25  IEANDALYALFELNHEAVVKRPLEQLLTLNQTD-SSDSLLEAITHALALTLADRQSLDVR 83

Query: 275 FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF 334
            H    ++    Q F    +N++    ++  R+ P++              +    I  +
Sbjct: 84  LHR--QSRTPWYQLFPQALSNNRYLLLFVPQRDDPNI---NQAYLKRFEAFLCSADIGIW 138

Query: 335 VYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
            Y    G   ++N         K +  +     LS       ++  +  K         +
Sbjct: 139 HYDSTTGETRFSNR-------VKELLQLNHHSPLSWQSLQQMVTVKDRYKFDPFLAPSPS 191

Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
                A     + +  +   +  +  E       +    G+  +  +++     +     
Sbjct: 192 GKHKLA--FRFRIDSNDVARVYELFAEHIYLENGHFKLLGLIKDQTESKAMLDALNEANE 249

Query: 453 QLCSILEATSDGIAI--INREGIILS-TNRAVSKLFGYPVEDI-LRKPFTVFLEQNTPSV 508
                LEA + G     I+ +G  +   ++  +++F   +EDI + + +   +       
Sbjct: 250 SKKLALEAGNIGNWRAQIDEQGQWIWQWDQRANEMFCLNIEDIGVLEKWAERIHPEDFPA 309

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR----IIIKKLPFSSCYSLTMHDIS-- 562
           +   + + L+        +        ++++ +     +   +   +S       D +  
Sbjct: 310 VMAAVEDSLANGNP--FHQEYRAILPNQEIIYILAKGKVSQGQNQQNSRIDGICIDQTPI 367

Query: 563 ----------------EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
                             KQ   +L  AK+ AE  S  KS+FL+ +SHE+RTP+ A+IG 
Sbjct: 368 YQARLALQESYRSLESRVKQRTTELQLAKERAEIASQAKSEFLSMISHELRTPMNAVIGA 427

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
            E++         +    +       S N ++ I+ND+LDI+KIESGKM L  +   L  
Sbjct: 428 LELLS----LADKSGEERDLIETASTSANNLIYILNDILDINKIESGKMQLEQQDFHLAG 483

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFT----PS 721
            +++ I      A+ + +      A  +P  +  D+  V+QI  N+LSNA+ FT      
Sbjct: 484 VIADLIKSFSPVASRQGLRFAVQEALELPDWVEGDIVKVRQILSNLLSNAMKFTHSTQEQ 543

Query: 722 GGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
            G + ++ T     +    V   V D G+G+     ++   PF Q   S      GTGLG
Sbjct: 544 TGCVSLNITVGEQNDIVTRVRFTVTDNGIGIDKATQKRLFTPFVQAQRSTTRNYGGTGLG 603

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
           L +   + +   G   + S   +G    +  P +   H
Sbjct: 604 LAICGKLTNLMGGSISLKSELGQGAQFCVELPFWRAHH 641



 Score = 38.9 bits (89), Expect = 3.7,   Method: Composition-based stats.
 Identities = 17/107 (15%), Positives = 42/107 (39%), Gaps = 4/107 (3%)

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
           ++ +     I +++G+I+  N A+  LF    E ++++P    L  N     +  L  I 
Sbjct: 8   IDDSPFAQLICDKQGVIIEANDALYALFELNHEAVVKRPLEQLLTLNQTDSSDSLLEAIT 67

Query: 518 SLDLRQTLEKITL--GSTKEEKLLSLRIIIKKLPFSSCYSLTM--HD 560
                   ++ +L     ++ +    ++  + L  +    L +   D
Sbjct: 68  HALALTLADRQSLDVRLHRQSRTPWYQLFPQALSNNRYLLLFVPQRD 114


>gi|67925200|ref|ZP_00518568.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal [Crocosphaera
           watsonii WH 8501]
 gi|67852959|gb|EAM48350.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal [Crocosphaera
           watsonii WH 8501]
          Length = 840

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 100/412 (24%), Positives = 180/412 (43%), Gaps = 52/412 (12%)

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFG--YPVEDILRKPFTVFLEQNTPSVM----- 509
           +LE     + + + +G I+  NR   +  G   P +     P        +   +     
Sbjct: 170 LLEELPLPVMLQSHQGEIIQQNRTWREQIGEFIPPDQATACPLPQKTRDRSQQPISFDNI 229

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL------------- 556
           ++Y   I S  +     K +L + K+ +   L I+ K    SS   L             
Sbjct: 230 DNYCQTIASTSITDIACKQSLKTKKDLQTFPLPIVAKYSQESSGNCLIDNDDRESRQICE 289

Query: 557 ------------------------TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
                                      D+++ +Q   +L+       + +  K +FLA +
Sbjct: 290 PDKVWQFIKCPLTTDKLEAPISIFVATDVTQQQQLCQELAAKNADLVQLNRLKDEFLACI 349

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHE+++PLTA++G S +++ ++ G L N R + YA  I RSG  ++ +VNDLLD++++E+
Sbjct: 350 SHELKSPLTAVVGLSSLLQEEKIGNL-NSRQVHYAQLIYRSGRQLMTLVNDLLDLTRLET 408

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYAN---EKRILIRTSFANNIPRILADLRSVKQIAL 709
           G++ L F PV++ E    A   +        EK +         +  +LAD   + Q+ +
Sbjct: 409 GQLKLSFNPVNIREICQRAYHSITEKYQSKTEKPVDFSLEIEPELEHLLADELRLHQMLV 468

Query: 710 NILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
           ++L NA+ FT +GG+I +  +  S+  +   V DTG+G+         + F Q+ N    
Sbjct: 469 HLLDNAMKFTQTGGKIGLKVSRWSD-WLAFNVWDTGIGIPEESQHLIFQKFQQLENPLTR 527

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY---DTSHPHD 818
           + EGTGLGL L + +  A+ G     S   +G+   ++ P     +   PHD
Sbjct: 528 QFEGTGLGLVLTQRLARAHGGDISFVSKAGQGSQFTLLLPPSPHKEQPSPHD 579


>gi|332186852|ref|ZP_08388594.1| his Kinase A domain protein [Sphingomonas sp. S17]
 gi|332013185|gb|EGI55248.1| his Kinase A domain protein [Sphingomonas sp. S17]
          Length = 805

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 111/659 (16%), Positives = 225/659 (34%), Gaps = 33/659 (5%)

Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH 233
            F          + R  +      +R  +    + + +    ++    +     +     
Sbjct: 27  AFDAAVDAAKAEMLRDPDQAITQAERARRIAERIDQAQPRALALATAGWLRGEARIRLRD 86

Query: 234 LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293
            R            A K          +L S+ S   +  +      +     + F   +
Sbjct: 87  DRAARADILDALAIAQKLAPGSELHGNVLLSKGSLDTDSGNIAGALTSYQFAYRVFQHRE 146

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTK 353
           +   ++   +   N       +          +++    +       +   N        
Sbjct: 147 DPRGQARALVQIANLYIDGKDYASALRY----LEQARATYLGDDSLRMVILNNR------ 196

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
             ++ ++         L   +        P +L +  R       RL  +  +  N+  +
Sbjct: 197 SITLGELGRVADSLVQLRDARKLAQKLNSPALLAQVWRNIARGELRLGRV--DAANAAIV 254

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG- 472
                +      +      I  +    R         + +  + ++  +  ++  +    
Sbjct: 255 RARQADPEADPADRNALLSIAAQAAFQRGQYAAAARAIYESFAGVDLATTPVSQRDAHQT 314

Query: 473 --IILSTN----------RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520
              I +            +A+ ++              +   +   +     +  + + D
Sbjct: 315 AYRIYAATGRTADALKHLQALKRIDDESTRLATSTNLALMSARFDFANQELRIARMKAAD 374

Query: 521 LRQTLEKITLGSTKEEKLL--SLRIIIKKLPFSSCYSLTM-HDISEWKQEKNKLSHAKKI 577
           L++ +         E  ++  S+  II  L     +  T+    +  +     L+     
Sbjct: 375 LQRNIAFEREQLRTERLIMFGSVGAIIVVLGLLGIWLFTLGRSRNRIRAAHGDLAITNDR 434

Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
            EK  + K+DFLA  SHEIRTPL  I+G ++V+              E    +  +G  +
Sbjct: 435 LEKALAVKTDFLATTSHEIRTPLNGILGMTQVMLADIRLSSDT---RERVEVMHGAGLTM 491

Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697
             +V+DLLD++KIE G++ L   P  L   + EA  L +  A  K I   T   +    +
Sbjct: 492 RALVDDLLDVAKIEHGRLTLEQAPFDLAATIREASRLWEDQAAAKGIGFTTDLRDCPTIV 551

Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757
           + D   ++QI  N+LSNA+ FTP G ++ +S +  S   V +RV DTG+G+   +LE+  
Sbjct: 552 MGDSARIRQIVFNLLSNALKFTPEG-RVDLSVSRQSKG-VSIRVSDTGIGIPAEKLEEIF 609

Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           + F Q   S   +  GTGLGL + + +  A  G   + S    GT   +  PL +   P
Sbjct: 610 EAFRQADASTTRQFGGTGLGLAICRRLAQAMGGDVTVDSELGHGTHFTLSLPLVEQPVP 668


>gi|220910672|ref|YP_002485982.1| histidine kinase [Cyanothece sp. PCC 7425]
 gi|219867444|gb|ACL47781.1| histidine kinase [Cyanothece sp. PCC 7425]
          Length = 810

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 109/545 (20%), Positives = 207/545 (37%), Gaps = 44/545 (8%)

Query: 275 FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF 334
           F     +     Q     +N        L  R H + +A   +      +        F 
Sbjct: 62  FEDQQQDFLLISQSPDVQRNLKILLNPALPAREHEAAAALLSKYWQRAVQLKPSLREIFV 121

Query: 335 VYSHGNLF-----YANPSFLLLTKYKSVDDIEIAGGLSTLL-DAPKLSDNNAIKPVMLYR 388
           +     +        N  +++L      D +E     + +   +P+           +  
Sbjct: 122 INRSNRVLLSTHQQHNGEYVILANVTYFDAVESGNSFAPIFYVSPETGKPAVTFATPIRD 181

Query: 389 SDR-TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
                     A L+  + +      +        +     +     +   +  + + ++ 
Sbjct: 182 QAGVRQGVVLAHLNLNRID----QIVRERAGLGRSGETYLVGSLVSKNTFISGKPSGQQG 237

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
           E  V      ++A   GI+  +     L  N A   + G     +  +   + +E     
Sbjct: 238 EAGVS--SQGIDAAMSGISGSD-----LYQNYADVPVIGV-FRWLNDQDIALLVEMKQWE 289

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQE 567
                    +++ L   +    L          L +   +L  SS          E K +
Sbjct: 290 AFAPARQLAITVVLVGLISVALLSICVYWLAKQLSLSRLQLENSSRQL-------EQKAQ 342

Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
           + +           +  KS FLA +SHE+RTPL AI+GF++V++     PL   +  E  
Sbjct: 343 EAE---------AANHAKSAFLAHMSHELRTPLNAILGFAQVMERD---PLLTHQQQESL 390

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
             I+RSG  +L ++ND+L++SKIE+G++ LH     L E +     + Q  A  K++ + 
Sbjct: 391 AIINRSGEHLLGLINDVLEMSKIEAGQIVLHPGAFDLHELLQTLRDMFQGRAEAKQLALN 450

Query: 688 TSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN---EEVILRVRD 743
            + A ++PR +++D   ++Q+ +N+LSNA+ FT  G  + +   +  +     +   V D
Sbjct: 451 VNLAADLPRYVISDEGKLRQVLINLLSNAVKFTDQG-TVTLEAAYQHHTGANYLTFAVAD 509

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TG G+   E E   +PF Q   +     EGTGLGL +++  VD   G+    S   +GT+
Sbjct: 510 TGRGIAPEEQEHLFQPFFQ-SAAGLKTEEGTGLGLSISRQFVDLMGGQISANSQLGQGTV 568

Query: 804 IEIIF 808
            +   
Sbjct: 569 FKFEI 573


>gi|189460351|ref|ZP_03009136.1| hypothetical protein BACCOP_00988 [Bacteroides coprocola DSM 17136]
 gi|189432903|gb|EDV01888.1| hypothetical protein BACCOP_00988 [Bacteroides coprocola DSM 17136]
          Length = 484

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 85/372 (22%), Positives = 169/372 (45%), Gaps = 27/372 (7%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           +++     + +I+ +  + I  +N E  IL  N     +     E++L+K       +N 
Sbjct: 129 QIKAAKNYMEAIINSVKEPIIGLNNELTILFINDEALNVLNLKREEVLQKSAQDISLRND 188

Query: 506 --PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS------CYSLT 557
               ++   +       + +T         KE       + I K   ++       Y + 
Sbjct: 189 LLRRLIRELMDSQKENKVGKTEPLKIYADNKESYFQMKYMQINKPGNNNSGSINEGYVIM 248

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
           + +I+E+K              +  S K+ F++ +SHE++TP++AI+   +++++ R G 
Sbjct: 249 LKNITEFK--------------ELDSAKTTFISTISHELKTPISAIMMSLQLLEDSRVGD 294

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
           L N    E A  I  +   +L+I  +LL+++++ESGK+ L        E +  AI   ++
Sbjct: 295 L-NDEQKELAQSIQDNSERLLNITGELLNMTQVESGKLQLKPRITKPIELIEYAIKANRV 353

Query: 678 YANEKRILIRTSFANN-IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
            A +  I I   +  N I ++  D   +  +  N+LSNAI ++P  G+III    T +  
Sbjct: 354 QAEKFNIQIEVQYPENKIGKLFVDSEKIAWVLTNLLSNAIRYSPENGRIIIGVRQTDDNY 413

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           + + VRD G G+     +     + ++P +   + +G+GLGL ++K  V+A+ G   + S
Sbjct: 414 IEMYVRDFGKGIDPRYHQSIFDHYFRVPGT---KVQGSGLGLSISKDFVEAHGGTLTVES 470

Query: 797 TPAKGTLIEIIF 808
              KG+   +  
Sbjct: 471 EVGKGSCFTLRL 482


>gi|149174846|ref|ZP_01853470.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797]
 gi|148846183|gb|EDL60522.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797]
          Length = 788

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 82/246 (33%), Positives = 141/246 (57%), Gaps = 8/246 (3%)

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           +    L  A++ AEK S  KS FLA +SHEIRTP+TAI+GF+E++K +      +P    
Sbjct: 376 RMVEDLVIAQQDAEKASHIKSSFLANMSHEIRTPMTAILGFAEIMKQRN----DDPEMSR 431

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           + + I ++G  +L+++ND+LD+SKIE+ K+ +     SL E + +  +L+++ A ++ + 
Sbjct: 432 HIDTIRKNGEYLLELINDILDVSKIEADKLEVEAIHCSLIELLDDVKTLMEIRAIDRGLD 491

Query: 686 IRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEE--VILRV 741
           +      +IP  I +D   ++QI +N+LSNAI FT  G  Q+I++ +     E  +   V
Sbjct: 492 LSVKIDGSIPRWIQSDPVRLRQILINLLSNAIKFTRQGHVQLIVTASSIDTNEPVIQFDV 551

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            D+G+GMT+ ++ +  +PF Q  +S   +  GTGLGL + K +     G+  + S    G
Sbjct: 552 IDSGIGMTDEQISRLFQPFMQADSSTTRQYGGTGLGLTICKRLTHILGGEISVNSEYGNG 611

Query: 802 TLIEII 807
           T   + 
Sbjct: 612 TTFSVT 617


>gi|254242148|ref|ZP_04935470.1| hypothetical protein PA2G_02877 [Pseudomonas aeruginosa 2192]
 gi|126195526|gb|EAZ59589.1| hypothetical protein PA2G_02877 [Pseudomonas aeruginosa 2192]
          Length = 918

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 77/257 (29%), Positives = 133/257 (51%), Gaps = 8/257 (3%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I+  K+E  +   A + A  E+  KS FLA++SHEIRTPL  ++G  +++++        
Sbjct: 384 INALKEEGFRSRQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPLDRG-- 441

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
                Y   I  SG+ ++ ++ND+LD ++IESGK++L      L+E +S+ ++L    A 
Sbjct: 442 --QAAYVETIASSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAV 499

Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVI 738
           EKR+ +       +PR +  D   ++Q+ +N+LSNA+ FT  G   + +           
Sbjct: 500 EKRLRLHLGLDRGVPRRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVRVQRRFDEGGHER 559

Query: 739 L--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           L   V D+G+G++    +   + F Q  +S   R  G+GLGL +++ +V    G+  + S
Sbjct: 560 LLYSVSDSGIGISAQAQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSS 619

Query: 797 TPAKGTLIEIIFPLYDT 813
            P KGT   +  PL   
Sbjct: 620 EPGKGTRFSVDLPLSPA 636


>gi|239908540|ref|YP_002955282.1| putative sensor histidine kinase [Desulfovibrio magneticus RS-1]
 gi|239798407|dbj|BAH77396.1| putative sensor histidine kinase [Desulfovibrio magneticus RS-1]
          Length = 663

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 111/623 (17%), Positives = 214/623 (34%), Gaps = 66/623 (10%)

Query: 242 SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301
            L +   +   V+  +    +      L        ++      +     +       F 
Sbjct: 55  RLEDELRYDLRVVAEQLSANMAEPLWFLESGNLARLLDAAMKNDRLAAVVVYEADDGDFL 114

Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIE 361
               R+    ++       L    +D  P+ F     G +       + +T+    D + 
Sbjct: 115 AGRSRDRSWRASAVTARPALDNVIIDSRPVYFGEALVGAVE------VQMTRRYMDDALR 168

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                  L      +   A   ++L R     +A+  R + ++       A+        
Sbjct: 169 QTLWRVVLRILALNAALAAALVLVLRRQLIRPLASLER-YAVEAAGRGETAVHPEGLRGE 227

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
                   Q+ +           R++     +  SI E  ++GI     +G +L+ N A+
Sbjct: 228 LGSLSAAMQDMV-----------RQLTAAQDKYRSIFENATEGIFQTTFDGRLLAANAAL 276

Query: 482 SKLFGYPVEDILRKPFTVFLEQ--NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
           +++ GY          T    +    P      L ++L+       +   +   K+   +
Sbjct: 277 ARMIGYATPQEAMASITDLSRELYQDPKDRARLLDQLLAEGAVAGFQTRFMRRDKQTIWV 336

Query: 540 SLRIIIKKLPFSSCYS--LTMHDISEWKQEKNKLSHAKKIAEKE---------------- 581
            + I + +           T+ D++   + + +L    +   +                 
Sbjct: 337 LVNIRLVRDADGRPLYNEGTVVDVTARVRAERRLEILNRHLREAVKERTGRLAVKAAELE 396

Query: 582 ---------SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ------------RFGPLGN 620
                       KS FLA VSH++RTPLT+I+GF+++I                      
Sbjct: 397 AANERLQELDRLKSGFLATVSHDLRTPLTSIMGFAKLISRDFNKFFAPFAPGHERLTRQA 456

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
            R       I+  G  +  ++ND LD+SKIESG+       V +  A+S A + V     
Sbjct: 457 ERITANLGIIENEGERLTRLINDFLDLSKIESGRAQWRDTEVDVSAALSRAANAVSADFA 516

Query: 681 EK-RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
            K  +    +    +P +  D   + Q+ +N+L NA  FT  G ++ ++   +    + +
Sbjct: 517 AKPEVRFTMALEGGLPPLYIDPDRLTQVLVNLLGNAAKFTDQG-EVKLAAAASD-GLLRV 574

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQ----IRGEGTGLGLPLAKAMVDANMGKFYIF 795
            V DTG G+    LEK    F Q           R +GTGLGL + + +V+   G+ +  
Sbjct: 575 VVTDTGHGIPRESLEKIFDKFHQAQIGDTMEEHGRRQGTGLGLAICRQIVEHYKGRVWAE 634

Query: 796 STPAKGTLIEIIFPLYDTSHPHD 818
           S   +G+   +  PL       D
Sbjct: 635 SELGRGSTFILELPLAGPPPAED 657



 Score = 38.9 bits (89), Expect = 3.3,   Method: Composition-based stats.
 Identities = 29/257 (11%), Positives = 71/257 (27%), Gaps = 14/257 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH---IGDLLKRQNT 142
            +     G L   +  L + IG    +     + D+S  L+ DP +    +  LL     
Sbjct: 260 IFQTTFDGRLLAANAALARMIGYATPQEAMASITDLSRELYQDPKDRARLLDQLLAEGAV 319

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
              +T     +     + + +    +   +         G V             + L++
Sbjct: 320 AGFQTRFMRRD--KQTIWVLVNIRLVRDADGRP--LYNEGTVVDVTARVRAERRLEILNR 375

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
                 + + G  +V K      + +      R+K+   +   +              L+
Sbjct: 376 HLREAVKERTGRLAV-KAAELEAANERLQELDRLKSGFLATVSHDLRTPLTSIMGFAKLI 434

Query: 263 TSEESSLPEQEDFHTINLNQYTKK--QYFGTLQNNSKESFEY----LSHRNHPSLSAYFD 316
           + + +            L +  ++     G ++N  +         L      S  A + 
Sbjct: 435 SRDFNKFFAPFAPGHERLTRQAERITANLGIIENEGERLTRLINDFLDLSKIESGRAQWR 494

Query: 317 EGENLTPETVDKCPIPF 333
           + E      + +     
Sbjct: 495 DTEVDVSAALSRAANAV 511


>gi|226945757|ref|YP_002800830.1| alginate regulatory hybrid histidine protein kinase GacS
           [Azotobacter vinelandii DJ]
 gi|226720684|gb|ACO79855.1| alginate regulatory hybrid histidine protein kinase GacS
           [Azotobacter vinelandii DJ]
          Length = 905

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 82/254 (32%), Positives = 138/254 (54%), Gaps = 10/254 (3%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L   ++ A + S  KS+FLA +SHEIRTPL  IIGF+ +++     P    R  +Y N 
Sbjct: 257 ELDMVRREALEASRIKSEFLANMSHEIRTPLNGIIGFTNLLQKCELTP----RQHDYLNT 312

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I +S + +LDI+N++LD SKIE+GK+ L   P +L E + + ++++   A+ K + + + 
Sbjct: 313 IQKSADSLLDIINEILDFSKIEAGKLVLEHTPFNLRELIQDTLTILAPAAHAKHLELVSL 372

Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDT 744
              + P  +  D + ++Q+  N++SNAI FT  G  I +        E    + + V DT
Sbjct: 373 IYRDTPLALNGDPQRLRQVLTNLISNAIKFTNEG-TIAVRAMVEDIGEEFAQLRISVHDT 431

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G++  +L    + F Q  NS   +  GTGLGL ++K +++   G+  + S P +G+  
Sbjct: 432 GIGLSQEDLNALFQAFSQADNSLTRQAGGTGLGLVISKRLIEQMGGEIGVNSVPGEGSEF 491

Query: 805 EIIFPLYDTSHPHD 818
            I   L    H  D
Sbjct: 492 WIRLSLPLDDHSED 505


>gi|257060052|ref|YP_003137940.1| histidine kinase [Cyanothece sp. PCC 8802]
 gi|256590218|gb|ACV01105.1| histidine kinase [Cyanothece sp. PCC 8802]
          Length = 845

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 79/232 (34%), Positives = 132/232 (56%), Gaps = 8/232 (3%)

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
           +  KS+FLA +SHEIRTPL AIIGFS++++      + + +   Y   I  SG+ +L ++
Sbjct: 360 NRAKSEFLANMSHEIRTPLNAIIGFSDLLQ----TLVRDYKSRSYLRSIVSSGHTLLALI 415

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILAD 700
           ND+LD+SKIE+ K+ L  EPV+L   V E   +  + A++K I + T  +++IP  I  D
Sbjct: 416 NDILDLSKIEANKLELREEPVNLKGLVQEIKQIFSMQASQKNIELITDVSSDIPLLIEFD 475

Query: 701 LRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILR--VRDTGVGMTNYELEKAM 757
              ++QI  N++ NA+ FT  G  +I ++  +    ++ +R  V+DTG+G+ + + ++  
Sbjct: 476 EIRLRQILFNLVGNALKFTQKGYIKITVNCDYLDLNKITIRIYVQDTGIGIPSDQHDRMF 535

Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           + F Q          GTGLGL + K + +   G   + S   KG+   +IFP
Sbjct: 536 EAFTQKEGQITRTYGGTGLGLAITKRLTEMLGGTISLHSESEKGSTFLMIFP 587


>gi|218246976|ref|YP_002372347.1| histidine kinase [Cyanothece sp. PCC 8801]
 gi|218167454|gb|ACK66191.1| histidine kinase [Cyanothece sp. PCC 8801]
          Length = 845

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 79/232 (34%), Positives = 132/232 (56%), Gaps = 8/232 (3%)

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
           +  KS+FLA +SHEIRTPL AIIGFS++++      + + +   Y   I  SG+ +L ++
Sbjct: 360 NRAKSEFLANMSHEIRTPLNAIIGFSDLLQ----TLVRDYKSRSYLRSIVSSGHTLLALI 415

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILAD 700
           ND+LD+SKIE+ K+ L  EPV+L   V E   +  + A++K I + T  +++IP  I  D
Sbjct: 416 NDILDLSKIEANKLELREEPVNLKGLVQEIKQIFSMQASQKNIELITDVSSDIPLLIEFD 475

Query: 701 LRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILR--VRDTGVGMTNYELEKAM 757
              ++QI  N++ NA+ FT  G  +I ++  +    ++ +R  V+DTG+G+ + + ++  
Sbjct: 476 EIRLRQILFNLVGNALKFTQKGYIKITVNCDYLDLNKITIRIYVQDTGIGIPSDQHDRMF 535

Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           + F Q          GTGLGL + K + +   G   + S   KG+   +IFP
Sbjct: 536 EAFTQKEGQITRTYGGTGLGLAITKRLTEMLGGTISLHSESEKGSTFLMIFP 587


>gi|164687351|ref|ZP_02211379.1| hypothetical protein CLOBAR_00992 [Clostridium bartlettii DSM
           16795]
 gi|164603775|gb|EDQ97240.1| hypothetical protein CLOBAR_00992 [Clostridium bartlettii DSM
           16795]
          Length = 438

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 86/361 (23%), Positives = 163/361 (45%), Gaps = 29/361 (8%)

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNH 511
           QL SI+++ S GI  I+ +G IL  N     +     + I   K    F+      ++  
Sbjct: 93  QLKSIMQSVSHGILAIDTKGKILLINDLAKIMVDGNQKLIPEGKNIRQFI---QNQIVLD 149

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEK 568
            +   +S +    ++K       ++ +  ++I       +     + + + +++E+ + +
Sbjct: 150 SIIYNMSGENSTVIQKNI----SKDTIYKIKIDPVHFEDTDAVIGFIINIENVTEYVKLE 205

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
                         + + +F+A VSHE++TP+T+I GF E +K      L +     +  
Sbjct: 206 --------------NMRKEFVANVSHELKTPITSIKGFVETLKMT--DNLDDDTKNRFLT 249

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I+     +  +++D+L +S IE+ K     E V L E   E   +V   A +K I ++ 
Sbjct: 250 IIENEATRLTRLIDDILLLSTIEN-KTKKKVEKVDLFEVFEEVHEVVNYIAKKKNIKVKY 308

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748
            F N    +      ++QI LNI+SNAI +T   G + I   +   ++V + V+D G+G+
Sbjct: 309 EFKNKYIDLWEYSGYIRQILLNIISNAIKYTGENGSVNIK-QYIKAKKVFIEVKDNGIGI 367

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
              ++E+  + F ++  ++     GTGLGL + K MV A  G   + S    G+   I  
Sbjct: 368 PQEDIERIFERFYRVDKARSRSVGGTGLGLAITKHMVKALNGNIKVESELGVGSKFIIEL 427

Query: 809 P 809
           P
Sbjct: 428 P 428


>gi|6166489|gb|AAF04854.1|AF197912_1 histidine protein kinase homolog GacS [Azotobacter vinelandii]
          Length = 905

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 82/254 (32%), Positives = 138/254 (54%), Gaps = 10/254 (3%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L   ++ A + S  KS+FLA +SHEIRTPL  IIGF+ +++     P    R  +Y N 
Sbjct: 257 ELDMVRREALEASRIKSEFLANMSHEIRTPLNGIIGFTNLLQKCELTP----RQHDYLNT 312

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I +S + +LDI+N++LD SKIE+GK+ L   P +L E + + ++++   A+ K + + + 
Sbjct: 313 IQKSADSLLDIINEILDFSKIEAGKLVLEHTPFNLRELIQDTLTILAPAAHAKHLELVSL 372

Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDT 744
              + P  +  D + ++Q+  N++SNAI FT  G  I +        E    + + V DT
Sbjct: 373 IYRDTPLALNGDPQRLRQVLTNLISNAIKFTNEG-TIAVRAMVEDIGEEFAQLRISVHDT 431

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G++  +L    + F Q  NS   +  GTGLGL ++K +++   G+  + S P +G+  
Sbjct: 432 GIGLSQEDLNALFQAFSQADNSLTRQAGGTGLGLVISKRLIEQMGGEIGVNSVPGEGSEF 491

Query: 805 EIIFPLYDTSHPHD 818
            I   L    H  D
Sbjct: 492 WIRLSLPLDDHSED 505


>gi|332704005|ref|ZP_08424093.1| histidine kinase [Desulfovibrio africanus str. Walvis Bay]
 gi|332554154|gb|EGJ51198.1| histidine kinase [Desulfovibrio africanus str. Walvis Bay]
          Length = 405

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 83/384 (21%), Positives = 159/384 (41%), Gaps = 25/384 (6%)

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
           + + + +++E +  ++ +IL+  +D + +++ +  I+S N    ++   P  +   K   
Sbjct: 31  EIKRSNQELEDQRREILAILDGITDLMMVLSEDLRIISVNHVFREM--IPDPEPEGKYCY 88

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF--SSCYSL 556
                             LS +       I   S +  +   +     K P        +
Sbjct: 89  TIFRGEDHPCPECPAFRSLSSNSVCRATAIFKLSDRNMR-FDMVASPLKNPDWPQHRVLI 147

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI------ 610
              D++  K+ + K   A+K+A           A V+HE+  PL A++GF+E I      
Sbjct: 148 FKRDVTLEKEYQAKFYQAEKMATIGV-----LAAGVAHEVNNPLAAVVGFAEGIKRRLPQ 202

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
             +           EY + I +      DIV  LL  S+     ++L    V+L+  VS+
Sbjct: 203 LERTIDGELYGDLKEYTDTILKECLRCRDIVKTLLTFSRHAPASLSL----VALNSVVSD 258

Query: 671 AISLVQLYANEK-RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
            + L+Q   +++  I I+     ++P I  +   +KQ+ LN+L+NA+      G I + T
Sbjct: 259 TLRLLQHELSKRSGIQIKMELEESLPVIKGNEAQLKQVVLNLLTNALDAIKDSGCITVRT 318

Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
                  + L +RDTG G+    L+K  +PF          G+G G+GL     +V  + 
Sbjct: 319 FLERGARLCLEIRDTGCGIPPEHLDKLFEPFFTTKP----VGKGIGIGLSTCYNIVHDHG 374

Query: 790 GKFYIFSTPAKGTLIEIIFPLYDT 813
           G   + S   +G+   ++ PL + 
Sbjct: 375 GSIQVSSNSGQGSSFTVVLPLSEE 398


>gi|300931244|ref|ZP_07146584.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 187-1]
 gi|300460898|gb|EFK24391.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 187-1]
          Length = 918

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 85/333 (25%), Positives = 153/333 (45%), Gaps = 17/333 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +FG+ +   +  P    +               L   +   +             +++ +
Sbjct: 193 IFGWRLMRDVTGPIRNMVNTVDR-----IRRGQLDSRVEGFMLGELDMLKNGINSMAMSL 247

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 248 AAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTP 307

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+ +       P       ++ N I+RS N +L I+ND+LD SK+E+GK+ L  
Sbjct: 308 LNGVIGFTRLTLKTELTPT----QRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILES 363

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P  L   + E ++L+   +++K + +  +  +++P  ++ D   ++QI  N++ NAI F
Sbjct: 364 IPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKF 423

Query: 719 TPSGGQ-IIISTTHTSNEEVILRV--RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T +G   I++     SN +V + V  RDTG+G+   +  +  + F Q   S   R  GTG
Sbjct: 424 TENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTG 483

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           LGL + + +V+   G     S P +G+      
Sbjct: 484 LGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516


>gi|300920361|ref|ZP_07136798.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 115-1]
 gi|300412624|gb|EFJ95934.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 115-1]
          Length = 918

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 85/333 (25%), Positives = 153/333 (45%), Gaps = 17/333 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +FG+ +   +  P    +               L   +   +             +++ +
Sbjct: 193 IFGWRLMRDVTGPIRNMVNTVDR-----IRRGQLDSRVEGFMLGELDMLKNGINSMAMSL 247

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 248 AAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTP 307

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+ +       P       ++ N I+RS N +L I+ND+LD SK+E+GK+ L  
Sbjct: 308 LNGVIGFTRLTLKTELTPT----QRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILES 363

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P  L   + E ++L+   +++K + +  +  +++P  ++ D   ++QI  N++ NAI F
Sbjct: 364 IPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKF 423

Query: 719 TPSGGQ-IIISTTHTSNEEVILRV--RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T +G   I++     SN +V + V  RDTG+G+   +  +  + F Q   S   R  GTG
Sbjct: 424 TENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTG 483

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           LGL + + +V+   G     S P +G+      
Sbjct: 484 LGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516


>gi|317154359|ref|YP_004122407.1| ATPase ATP-binding domain-containing protein [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316944610|gb|ADU63661.1| ATP-binding region ATPase domain protein [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 764

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 112/568 (19%), Positives = 211/568 (37%), Gaps = 44/568 (7%)

Query: 274 DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF 333
                 L     +Q             E + H     +   F     +            
Sbjct: 57  ATRDEVLPAIIDRQRTALNLERLGRFAETIHHSRDSGIRRQFLLAGRILS------QDSV 110

Query: 334 FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393
           F  +         ++  +     + D         L      S   A    +L  +    
Sbjct: 111 FEENETINQLVVAAYADIEAIARLRDRRDQLDDEALAVLHGFSTGGADMDALLGIAPGRE 170

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT--RINKRKMEIEV 451
           +A          +RE+   +     + A Q     P+     ++  +  R+    +E + 
Sbjct: 171 LARLLFEADRSIDRESMARLESQFLQLAGQAGTPAPRVASSLDNARSFFRLQAEVLETDA 230

Query: 452 MQLCSIL------EATSDGIAI---INREGIILSTNRAVSKLFG--YPVEDILRKPFTVF 500
             L   L      E  +D ++I   +  +    S      ++          L   F V 
Sbjct: 231 TCLGLWLGVNESLEFMADSLSINAEVTADDRFTSIAGLADRVMQTGLLAAGALMLAFGVL 290

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
           L  +   ++   L  +  L+     E+  +    E +L  L  I   +  S      + +
Sbjct: 291 LYFSQRDIVTPILRCVHGLERMARGERDVVL--PEARLKELDAIRSAVERSGSLMAQLAE 348

Query: 561 ISE---------------WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
            +                 ++ + +L+ AK+ AE     K+DFLA +SHEIRTP+  I+G
Sbjct: 349 RTRETQATNEALKAEMEVRRETERELALAKERAEAADRAKTDFLAGMSHEIRTPMNTILG 408

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
            ++++      P+      +Y      SG ++L I+ND+LD+SKIE+G++ L   PV + 
Sbjct: 409 MADLMLETDPTPV----QRQYIEVFQSSGAMLLGIINDVLDLSKIEAGEVRLETVPVDMA 464

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG- 723
           + ++    +V   A +K +  R   A++ PR  L D   ++Q+ +N++ N I FT SG  
Sbjct: 465 DFLNRTREIVAGRAAQKGLAFRIEQADHAPRRFLGDPVRLRQVLVNLIDNGIKFTESGTV 524

Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
           ++ +         +   V DTG+G+     E+  + F Q   S   +  GTGLGL +++ 
Sbjct: 525 RLAVGQAADPPGRLTFAVTDTGIGIAPESQEQIFQRFTQADASTTRKYGGTGLGLAISRR 584

Query: 784 MVDANMGKFYIFSTPAKGTLIEII--FP 809
           +V+   G+  + S P +G+        P
Sbjct: 585 LVELMGGEIRLESAPGQGSTFSFTVDLP 612


>gi|215488103|ref|YP_002330534.1| hybrid sensory histidine kinase BarA [Escherichia coli O127:H6 str.
           E2348/69]
 gi|215266175|emb|CAS10601.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli O127:H6 str. E2348/69]
          Length = 918

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 85/333 (25%), Positives = 153/333 (45%), Gaps = 17/333 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +FG+ +   +  P    +               L   +   +             +++ +
Sbjct: 193 IFGWRLMRDVTGPIRNMVNTVDR-----IRRGQLDSRVEGFMLGELDMLKNGINSMAMSL 247

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 248 AAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTP 307

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+ +       P       ++ N I+RS N +L I+ND+LD SK+E+GK+ L  
Sbjct: 308 LNGVIGFTRLTLKTELTPT----QRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILES 363

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P  L   + E ++L+   +++K + +  +  +++P  ++ D   ++QI  N++ NAI F
Sbjct: 364 IPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKF 423

Query: 719 TPSGGQ-IIISTTHTSNEEVILRV--RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T +G   I++     SN +V + V  RDTG+G+   +  +  + F Q   S   R  GTG
Sbjct: 424 TENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTG 483

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           LGL + + +V+   G     S P +G+      
Sbjct: 484 LGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516


>gi|15803307|ref|NP_289340.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7
           EDL933]
 gi|25308230|pir||G85929 hypothetical protein barA [imported] - Escherichia coli  (strain
           O157:H7, substrain EDL933)
 gi|12517258|gb|AAG57899.1|AE005506_7 sensor-regulator, activates OmpR by phophorylation [Escherichia
           coli O157:H7 str. EDL933]
          Length = 918

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 85/333 (25%), Positives = 153/333 (45%), Gaps = 17/333 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +FG+ +   +  P    +               L   +   +             +++ +
Sbjct: 193 IFGWRLMRDVTGPIRNMVNTVDR-----IRRGQLDSRVEGFMLGELDMLKNGINSMAMSL 247

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 248 AAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTP 307

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+ +       P       ++ N I+RS N +L I+ND+LD SK+E+GK+ L  
Sbjct: 308 LNGVIGFTRLTLKTELTPT----QRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILES 363

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P  L   + E ++L+   +++K + +  +  +++P  ++ D   ++QI  N++ NAI F
Sbjct: 364 IPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKF 423

Query: 719 TPSGGQ-IIISTTHTSNEEVILRV--RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T +G   I++     SN +V + V  RDTG+G+   +  +  + F Q   S   R  GTG
Sbjct: 424 TENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTG 483

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           LGL + + +V+   G     S P +G+      
Sbjct: 484 LGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516


>gi|15832900|ref|NP_311673.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str.
           Sakai]
 gi|16130693|ref|NP_417266.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli str. K-12 substr. MG1655]
 gi|26249187|ref|NP_755227.1| hybrid sensory histidine kinase BarA [Escherichia coli CFT073]
 gi|74313358|ref|YP_311777.1| hybrid sensory histidine kinase BarA [Shigella sonnei Ss046]
 gi|82778168|ref|YP_404517.1| hybrid sensory histidine kinase BarA [Shigella dysenteriae Sd197]
 gi|89109572|ref|AP_003352.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli str. K-12 substr. W3110]
 gi|157159173|ref|YP_001464108.1| hybrid sensory histidine kinase BarA [Escherichia coli E24377A]
 gi|157162240|ref|YP_001459558.1| hybrid sensory histidine kinase BarA [Escherichia coli HS]
 gi|168750997|ref|ZP_02776019.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4113]
 gi|168758477|ref|ZP_02783484.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4401]
 gi|168764499|ref|ZP_02789506.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4501]
 gi|168766754|ref|ZP_02791761.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4486]
 gi|168777593|ref|ZP_02802600.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4196]
 gi|168778774|ref|ZP_02803781.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4076]
 gi|168788044|ref|ZP_02813051.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC869]
 gi|168802533|ref|ZP_02827540.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC508]
 gi|170018968|ref|YP_001723922.1| hybrid sensory histidine kinase BarA [Escherichia coli ATCC 8739]
 gi|170082357|ref|YP_001731677.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli str. K-12 substr. DH10B]
 gi|170680902|ref|YP_001744948.1| hybrid sensory histidine kinase BarA [Escherichia coli SMS-3-5]
 gi|187732711|ref|YP_001881473.1| hybrid sensory histidine kinase BarA [Shigella boydii CDC 3083-94]
 gi|188492553|ref|ZP_02999823.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           53638]
 gi|191168547|ref|ZP_03030332.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           B7A]
 gi|193071118|ref|ZP_03052043.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           E110019]
 gi|194426308|ref|ZP_03058863.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           B171]
 gi|194439650|ref|ZP_03071721.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           101-1]
 gi|195936388|ref|ZP_03081770.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str.
           EC4024]
 gi|208805653|ref|ZP_03247990.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4206]
 gi|208814172|ref|ZP_03255501.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4045]
 gi|208820939|ref|ZP_03261259.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4042]
 gi|209398921|ref|YP_002272251.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4115]
 gi|209920235|ref|YP_002294319.1| hybrid sensory histidine kinase BarA [Escherichia coli SE11]
 gi|217327442|ref|ZP_03443525.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. TW14588]
 gi|218555337|ref|YP_002388250.1| hybrid sensory histidine kinase BarA [Escherichia coli IAI1]
 gi|218706282|ref|YP_002413801.1| hybrid sensory histidine kinase BarA [Escherichia coli UMN026]
 gi|227888324|ref|ZP_04006129.1| hybrid sensory histidine kinase BarA [Escherichia coli 83972]
 gi|238901924|ref|YP_002927720.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli BW2952]
 gi|254037836|ref|ZP_04871894.1| sensor-regulator [Escherichia sp. 1_1_43]
 gi|254794728|ref|YP_003079565.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str.
           TW14359]
 gi|256019427|ref|ZP_05433292.1| hybrid sensory histidine kinase BarA [Shigella sp. D9]
 gi|256024711|ref|ZP_05438576.1| hybrid sensory histidine kinase BarA [Escherichia sp. 4_1_40B]
 gi|260845432|ref|YP_003223210.1| hybrid sensory histidine kinase BarY, in two-component regulatory
           system with UvrY [Escherichia coli O103:H2 str. 12009]
 gi|260856896|ref|YP_003230787.1| hybrid sensory histidine kinase BarY, in two-component regulatory
           system with UvrY [Escherichia coli O26:H11 str. 11368]
 gi|261226085|ref|ZP_05940366.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli O157:H7 str. FRIK2000]
 gi|261256660|ref|ZP_05949193.1| hybrid sensory histidine kinase BarY, in two-component regulatory
           system with UvrY [Escherichia coli O157:H7 str. FRIK966]
 gi|291284115|ref|YP_003500933.1| Signal transduction histidine-protein kinase barA [Escherichia coli
           O55:H7 str. CB9615]
 gi|293406278|ref|ZP_06650204.1| hybrid sensory histidine kinase BarA [Escherichia coli FVEC1412]
 gi|293412134|ref|ZP_06654857.1| signal transduction histidine-protein kinase barA [Escherichia coli
           B354]
 gi|293416033|ref|ZP_06658673.1| two-component system [Escherichia coli B185]
 gi|293449112|ref|ZP_06663533.1| two-component system [Escherichia coli B088]
 gi|298382015|ref|ZP_06991612.1| two-component system [Escherichia coli FVEC1302]
 gi|300815797|ref|ZP_07096021.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 107-1]
 gi|300820572|ref|ZP_07100723.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 119-7]
 gi|300898160|ref|ZP_07116522.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 198-1]
 gi|300906689|ref|ZP_07124377.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 84-1]
 gi|300923241|ref|ZP_07139295.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 182-1]
 gi|300950514|ref|ZP_07164424.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 116-1]
 gi|300958100|ref|ZP_07170260.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 175-1]
 gi|300976048|ref|ZP_07173263.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 45-1]
 gi|301026289|ref|ZP_07189744.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 196-1]
 gi|301027557|ref|ZP_07190890.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 69-1]
 gi|301049457|ref|ZP_07196415.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 185-1]
 gi|301304554|ref|ZP_07210664.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 124-1]
 gi|301325726|ref|ZP_07219183.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 78-1]
 gi|306812334|ref|ZP_07446532.1| hybrid sensory histidine kinase BarA [Escherichia coli NC101]
 gi|307312785|ref|ZP_07592415.1| multi-sensor hybrid histidine kinase [Escherichia coli W]
 gi|309786099|ref|ZP_07680728.1| signal transduction histidine-protein kinase barA [Shigella
           dysenteriae 1617]
 gi|309795252|ref|ZP_07689671.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 145-7]
 gi|312972998|ref|ZP_07787171.1| signal transduction histidine-protein kinase barA [Escherichia coli
           1827-70]
 gi|331664346|ref|ZP_08365252.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           TA143]
 gi|331669520|ref|ZP_08370366.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           TA271]
 gi|331674279|ref|ZP_08375039.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           TA280]
 gi|331678763|ref|ZP_08379437.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           H591]
 gi|331684406|ref|ZP_08384998.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           H299]
 gi|332280547|ref|ZP_08392960.1| hybrid sensory histidine kinase in two-component system response
           regulatory system with UvrY [Shigella sp. D9]
 gi|83288337|sp|P0AEC7|BARA_ECO57 RecName: Full=Signal transduction histidine-protein kinase BarA
 gi|83288338|sp|P0AEC6|BARA_ECOL6 RecName: Full=Signal transduction histidine-protein kinase BarA
 gi|83288339|sp|P0AEC5|BARA_ECOLI RecName: Full=Signal transduction histidine-protein kinase BarA
 gi|26109594|gb|AAN81797.1|AE016765_199 Sensor protein barA [Escherichia coli CFT073]
 gi|216535|dbj|BAA01710.1| sensor-regulator protein [Escherichia coli]
 gi|1789149|gb|AAC75828.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli str. K-12 substr. MG1655]
 gi|13363117|dbj|BAB37069.1| sensor-regulator protein barA [Escherichia coli O157:H7 str. Sakai]
 gi|73856835|gb|AAZ89542.1| sensor-regulator, activates OmpR by phophorylation [Shigella sonnei
           Ss046]
 gi|81242316|gb|ABB63026.1| sensor-regulator [Shigella dysenteriae Sd197]
 gi|85675605|dbj|BAA16571.2| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli str. K12 substr. W3110]
 gi|157067920|gb|ABV07175.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           HS]
 gi|157081203|gb|ABV20911.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           E24377A]
 gi|169753896|gb|ACA76595.1| multi-sensor hybrid histidine kinase [Escherichia coli ATCC 8739]
 gi|169890192|gb|ACB03899.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli str. K-12 substr. DH10B]
 gi|170518620|gb|ACB16798.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           SMS-3-5]
 gi|187429703|gb|ACD08977.1| sensor histidine kinase/response regulator BarA [Shigella boydii
           CDC 3083-94]
 gi|187767204|gb|EDU31048.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4196]
 gi|188014881|gb|EDU53003.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4113]
 gi|188487752|gb|EDU62855.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           53638]
 gi|189003359|gb|EDU72345.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4076]
 gi|189354721|gb|EDU73140.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4401]
 gi|189363700|gb|EDU82119.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4486]
 gi|189365501|gb|EDU83917.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4501]
 gi|189372239|gb|EDU90655.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC869]
 gi|189375500|gb|EDU93916.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC508]
 gi|190901394|gb|EDV61158.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           B7A]
 gi|192955579|gb|EDV86057.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           E110019]
 gi|194415616|gb|EDX31883.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           B171]
 gi|194421397|gb|EDX37413.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           101-1]
 gi|208725454|gb|EDZ75055.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4206]
 gi|208735449|gb|EDZ84136.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4045]
 gi|208741062|gb|EDZ88744.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4042]
 gi|209160321|gb|ACI37754.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. EC4115]
 gi|209761428|gb|ACI79026.1| sensor-regulator protein barA [Escherichia coli]
 gi|209761430|gb|ACI79027.1| sensor-regulator protein barA [Escherichia coli]
 gi|209761432|gb|ACI79028.1| sensor-regulator protein barA [Escherichia coli]
 gi|209761434|gb|ACI79029.1| sensor-regulator protein barA [Escherichia coli]
 gi|209761436|gb|ACI79030.1| sensor-regulator protein barA [Escherichia coli]
 gi|209913494|dbj|BAG78568.1| two-component sensor kinase [Escherichia coli SE11]
 gi|217319809|gb|EEC28234.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           O157:H7 str. TW14588]
 gi|218362105|emb|CAQ99714.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli IAI1]
 gi|218433379|emb|CAR14281.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli UMN026]
 gi|226839460|gb|EEH71481.1| sensor-regulator [Escherichia sp. 1_1_43]
 gi|227834593|gb|EEJ45059.1| hybrid sensory histidine kinase BarA [Escherichia coli 83972]
 gi|238861442|gb|ACR63440.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli BW2952]
 gi|254594128|gb|ACT73489.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli O157:H7 str. TW14359]
 gi|257755545|dbj|BAI27047.1| hybrid sensory histidine kinase BarY, in two-component regulatory
           system with UvrY [Escherichia coli O26:H11 str. 11368]
 gi|257760579|dbj|BAI32076.1| hybrid sensory histidine kinase BarY, in two-component regulatory
           system with UvrY [Escherichia coli O103:H2 str. 12009]
 gi|260448163|gb|ACX38585.1| Hpt sensor hybrid histidine kinase [Escherichia coli DH1]
 gi|290763988|gb|ADD57949.1| Signal transduction histidine-protein kinase barA [Escherichia coli
           O55:H7 str. CB9615]
 gi|291322202|gb|EFE61631.1| two-component system [Escherichia coli B088]
 gi|291426284|gb|EFE99316.1| hybrid sensory histidine kinase BarA [Escherichia coli FVEC1412]
 gi|291432222|gb|EFF05204.1| two-component system [Escherichia coli B185]
 gi|291468905|gb|EFF11396.1| signal transduction histidine-protein kinase barA [Escherichia coli
           B354]
 gi|298277155|gb|EFI18671.1| two-component system [Escherichia coli FVEC1302]
 gi|299879748|gb|EFI87959.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 196-1]
 gi|300298688|gb|EFJ55073.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 185-1]
 gi|300315220|gb|EFJ65004.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 175-1]
 gi|300358135|gb|EFJ74005.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 198-1]
 gi|300394900|gb|EFJ78438.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 69-1]
 gi|300401524|gb|EFJ85062.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 84-1]
 gi|300410145|gb|EFJ93683.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 45-1]
 gi|300420480|gb|EFK03791.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 182-1]
 gi|300450174|gb|EFK13794.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 116-1]
 gi|300526836|gb|EFK47905.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 119-7]
 gi|300531726|gb|EFK52788.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 107-1]
 gi|300840158|gb|EFK67918.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 124-1]
 gi|300847476|gb|EFK75236.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 78-1]
 gi|305854372|gb|EFM54810.1| hybrid sensory histidine kinase BarA [Escherichia coli NC101]
 gi|306907220|gb|EFN37726.1| multi-sensor hybrid histidine kinase [Escherichia coli W]
 gi|307554758|gb|ADN47533.1| sensor-regulator [Escherichia coli ABU 83972]
 gi|308121223|gb|EFO58485.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 145-7]
 gi|308926210|gb|EFP71688.1| signal transduction histidine-protein kinase barA [Shigella
           dysenteriae 1617]
 gi|309703144|emb|CBJ02478.1| two-component sensor kinase/response regulator [Escherichia coli
           ETEC H10407]
 gi|310332940|gb|EFQ00154.1| signal transduction histidine-protein kinase barA [Escherichia coli
           1827-70]
 gi|315137393|dbj|BAJ44552.1| signal transduction histidine-protein kinase [Escherichia coli DH1]
 gi|315256645|gb|EFU36613.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 85-1]
 gi|315293741|gb|EFU53093.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 153-1]
 gi|315615172|gb|EFU95809.1| signal transduction histidine-protein kinase barA [Escherichia coli
           3431]
 gi|320189119|gb|EFW63778.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str.
           EC1212]
 gi|320202430|gb|EFW77000.1| hybrid sensory histidine kinase BarA [Escherichia coli EC4100B]
 gi|320640434|gb|EFX09973.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str.
           G5101]
 gi|320645681|gb|EFX14666.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H- str.
           493-89]
 gi|320650981|gb|EFX19421.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H- str.
           H 2687]
 gi|320662373|gb|EFX29770.1| hybrid sensory histidine kinase BarA [Escherichia coli O55:H7 str.
           USDA 5905]
 gi|320667071|gb|EFX34034.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323154830|gb|EFZ41023.1| signal transduction histidine-protein kinase barA [Escherichia coli
           EPECa14]
 gi|323159899|gb|EFZ45869.1| signal transduction histidine-protein kinase barA [Escherichia coli
           E128010]
 gi|323167874|gb|EFZ53565.1| signal transduction histidine-protein kinase barA [Shigella sonnei
           53G]
 gi|323183325|gb|EFZ68722.1| signal transduction histidine-protein kinase barA [Escherichia coli
           1357]
 gi|323188798|gb|EFZ74083.1| signal transduction histidine-protein kinase barA [Escherichia coli
           RN587/1]
 gi|323935852|gb|EGB32155.1| hsp90-like protein [Escherichia coli E1520]
 gi|323946491|gb|EGB42517.1| hsp90-like protein [Escherichia coli H120]
 gi|323960696|gb|EGB56320.1| hsp90-like protein [Escherichia coli H489]
 gi|323971612|gb|EGB66843.1| hsp90-like protein [Escherichia coli TA007]
 gi|324005670|gb|EGB74889.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 57-2]
 gi|324016361|gb|EGB85580.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 117-3]
 gi|324119828|gb|EGC13707.1| hsp90-like protein [Escherichia coli E1167]
 gi|326339142|gb|EGD62957.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str.
           1044]
 gi|326342975|gb|EGD66743.1| hybrid sensory histidine kinase BarA [Escherichia coli O157:H7 str.
           1125]
 gi|331058277|gb|EGI30258.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           TA143]
 gi|331063188|gb|EGI35101.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           TA271]
 gi|331068373|gb|EGI39768.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           TA280]
 gi|331073593|gb|EGI44914.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           H591]
 gi|331078021|gb|EGI49227.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           H299]
 gi|332092168|gb|EGI97246.1| signal transduction histidine-protein kinase barA [Shigella boydii
           3594-74]
 gi|332102899|gb|EGJ06245.1| hybrid sensory histidine kinase in two-component system response
           regulatory system with UvrY [Shigella sp. D9]
 gi|332344677|gb|AEE58011.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           UMNK88]
          Length = 918

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 85/333 (25%), Positives = 153/333 (45%), Gaps = 17/333 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +FG+ +   +  P    +               L   +   +             +++ +
Sbjct: 193 IFGWRLMRDVTGPIRNMVNTVDR-----IRRGQLDSRVEGFMLGELDMLKNGINSMAMSL 247

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 248 AAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTP 307

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+ +       P       ++ N I+RS N +L I+ND+LD SK+E+GK+ L  
Sbjct: 308 LNGVIGFTRLTLKTELTPT----QRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILES 363

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P  L   + E ++L+   +++K + +  +  +++P  ++ D   ++QI  N++ NAI F
Sbjct: 364 IPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKF 423

Query: 719 TPSGGQ-IIISTTHTSNEEVILRV--RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T +G   I++     SN +V + V  RDTG+G+   +  +  + F Q   S   R  GTG
Sbjct: 424 TENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTG 483

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           LGL + + +V+   G     S P +G+      
Sbjct: 484 LGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516


>gi|319793166|ref|YP_004154806.1| pas/pac sensor signal transduction histidine kinase [Variovorax
           paradoxus EPS]
 gi|315595629|gb|ADU36695.1| PAS/PAC sensor signal transduction histidine kinase [Variovorax
           paradoxus EPS]
          Length = 445

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 85/411 (20%), Positives = 160/411 (38%), Gaps = 28/411 (6%)

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPED---VDTRINKRKMEIEVMQLCSILEAT 461
           W  E  L +              +     E       D     R+ E  + +  + ++A+
Sbjct: 45  WRAERLLQVLRNDATGLPTRGPGVWGELAERIRKLLRDREQQTRQAEDRLQEFLAAIQAS 104

Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
            +G+ +++ +G I   N+  +  FG   E  L +     +          YL        
Sbjct: 105 PNGVILLDEQGRIEWCNQTAAGQFGIDAERDLLQHLANLVRD---PAFVAYLASWNYSRD 161

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE 581
                     + +    + L + +     +    LT  DI+  +Q +             
Sbjct: 162 VVIDASGPGHTHQRSHPVRLSVQVHPYAGNRRMLLT-RDITALEQAE------------- 207

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
            + + DF+A VSHEIRTPLT + GF E ++N    PL     + Y + + +  + +  +V
Sbjct: 208 -AMRRDFVANVSHEIRTPLTVLAGFVETLQN---LPLDADERMRYLSLMGQQSHRMETLV 263

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISL---VQLYANEKRILIRTSFANNIPRIL 698
           NDLL +S++E        + + +   +++       +          +  +       I 
Sbjct: 264 NDLLTLSRLEGSASPSGNQWIRIRALLAQCEDEGRGLSGRLAPLGHRLSFTIDAES-EIS 322

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
                ++    N+LSNAI +TP GG++ +S     +      V+DTG G+    + +  +
Sbjct: 323 GAPTELQSAMSNLLSNAIRYTPGGGEVAVSWRVLPDGRGEYAVKDTGPGIAAEHIPRLTE 382

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            F +I  S+     GTGLGL + K +   +  +  I ST  KG+   ++FP
Sbjct: 383 RFYRIDRSRSRETGGTGLGLAIVKHIAQRHGAELRIESTVGKGSRFALVFP 433


>gi|315179123|gb|ADT86037.1| sensor histidine kinase/response regulator [Vibrio furnissii NCTC
           11218]
          Length = 915

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 89/341 (26%), Positives = 156/341 (45%), Gaps = 19/341 (5%)

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
           F + +   + +P T        ++++      L + +   +        K    +++ + 
Sbjct: 173 FAFRLMHDVTRPITHM-----KNMVDRIRRGHLDVRIEGKMHGELDSLKKGINAMAVSLS 227

Query: 545 IKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
              +           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTPL
Sbjct: 228 EYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPL 287

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
             +IGF+  +   +          +Y   I++S N +L I+ND+LD SK+E+GK+ L   
Sbjct: 288 NGVIGFTRQMLKTQLTN----SQADYLQTIEKSANNLLTIINDILDFSKLEAGKLALENI 343

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFT 719
           P    E + E ++L    A+EK + I       IP  ++ D   ++Q+  N++ N+I FT
Sbjct: 344 PFEFQETLEEVVNLQATSAHEKGLEITLKVDPKIPAGLVGDPLRIQQVLTNLVGNSIKFT 403

Query: 720 PSGGQIIISTTHTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
             G  I IS    S      E+   VRDTG+G++  +  +  + F Q   S   R  GTG
Sbjct: 404 ERG-NIDISVEMRSQRDDVVELQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTG 462

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           LGL + + +V    G+  + S   +G+       L+ T  P
Sbjct: 463 LGLVITQKLVSQMGGEISLTSRLHQGSTFWFTLRLHITEMP 503


>gi|242279530|ref|YP_002991659.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfovibrio salexigens DSM 2638]
 gi|242122424|gb|ACS80120.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfovibrio salexigens DSM 2638]
          Length = 901

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 90/546 (16%), Positives = 189/546 (34%), Gaps = 54/546 (9%)

Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
                 +        +       + ++   +  Y +P +  +  Y   +          L
Sbjct: 371 AKEEVRQSRERFALAMAANKDGVWDWNIKTDDVYYSPGYKAMLGYGENELPSHVDSWVDL 430

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
           +      D      V     +               + +    +      + ++  + + 
Sbjct: 431 IHED---DRVHAFNVNSKCINNEIENFEVEFRMQAKDGKWLWILGRGNAVERDESGKAIR 487

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
             G   +  + + +  +++    QL SI+++    +  +N EG +   NR  S++ G   
Sbjct: 488 MIGTHTDITELKNSLEEIKDLRNQLKSIIDSMPVILVGLNGEGRVTRWNRKASEVAGISD 547

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
           E  + +       + +P      + + LS     T  +++     +     + I      
Sbjct: 548 EQAVGRLVEEVFPRLSP--YMKQVRDSLSSQKVWTDPRVSRKQDGDVFYDDIMIYPLSAG 605

Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                 + + D++E  + ++ L   +K+            A ++HEI  PL  I   ++ 
Sbjct: 606 DQDGVVVQIEDVTERVRLEDMLVQNEKML-----SVGGLAAGMAHEINNPLGVIAQGAQN 660

Query: 610 IKNQRFGPLGN------------PRYIEYANY---------IDRSGNLVLDIVNDLLDIS 648
           I  +  G L +                 Y +          I  S +    IV ++L  S
Sbjct: 661 ITRRVLGDLKSNRRAAEARNINLEDLHGYMHDRDIPKIINGITASVDRAAKIVRNMLSFS 720

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISL------VQLYANEKRILIRTSFANNIPRILADLR 702
           +    K   +F+   L E +   I L      +    + K+I I   F ++I  +L +  
Sbjct: 721 R----KNQDNFKQHDLSELLDNTIELADNEYNLSTKYDFKKIEIIREFEDDISTVLCEGS 776

Query: 703 SVKQIALNILSNAIHFT-----PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757
            ++Q+ LN+L N+          SGG   I   +   + V + + D G G+     ++  
Sbjct: 777 EIQQVFLNLLKNSAQSMTSKSYDSGGPTFILRAYEKRDWVNIEIEDNGQGIDENVRKRIF 836

Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMV-DANMGKFYIFSTPAKGTLIEIIFPLYDT--S 814
           +PF          GEGTGLGL ++  ++ D + G   ++S+P   T   I  P+  +   
Sbjct: 837 EPFYTTKK----VGEGTGLGLAISYFIIADLHNGNMEVYSSPGNWTKFVISLPIQQSVFG 892

Query: 815 HPHDCI 820
            P  CI
Sbjct: 893 QPCPCI 898



 Score = 55.4 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/146 (11%), Positives = 48/146 (32%), Gaps = 8/146 (5%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK--PFT 498
           R  K ++     +    + A  DG+   N +   +  +     + GY   ++      + 
Sbjct: 369 RNAKEEVRQSRERFALAMAANKDGVWDWNIKTDDVYYSPGYKAMLGYGENELPSHVDSWV 428

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-----C 553
             + ++      +  ++ ++ ++ +  E       K+ K L +      +          
Sbjct: 429 DLIHEDDRVHAFNVNSKCINNEI-ENFEVEFRMQAKDGKWLWILGRGNAVERDESGKAIR 487

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAE 579
              T  DI+E K    ++   +   +
Sbjct: 488 MIGTHTDITELKNSLEEIKDLRNQLK 513



 Score = 45.4 bits (106), Expect = 0.041,   Method: Composition-based stats.
 Identities = 18/161 (11%), Positives = 41/161 (25%), Gaps = 7/161 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ++  G +   + +  +  G    + +G  + +V   L       + D L  Q  W     
Sbjct: 526 LNGEGRVTRWNRKASEVAGISDEQAVGRLVEEVFPRLSP-YMKQVRDSLSSQKVWTDPRV 584

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +G   Y  I +  L    ++           +           +  + +K  S   
Sbjct: 585 SRKQDGDVFYDDIMIYPLSAGDQDGVVV------QIEDVTERVRLEDMLVQNEKMLSVGG 638

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH 249
                   +      I           + +  S+     A 
Sbjct: 639 LAAGMAHEINNPLGVIAQGAQNITRRVLGDLKSNRRAAEAR 679


>gi|313108338|ref|ZP_07794370.1| putative two-component sensor [Pseudomonas aeruginosa 39016]
 gi|310880872|gb|EFQ39466.1| putative two-component sensor [Pseudomonas aeruginosa 39016]
          Length = 741

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 89/379 (23%), Positives = 161/379 (42%), Gaps = 19/379 (5%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF--T 498
           +  +  +   +    ++++     ++I   +G +L+ NR   +      E         +
Sbjct: 101 QRTEADLSGRLALKQALVDGIPYPVSIRTLDGRLLACNRNYLESLRMTREQARGTLLTDS 160

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM 558
            ++E +   +M+     +         +          +LL +   +          L +
Sbjct: 161 DWVEGSKARLMHQQCLAVARGGTASFTDMAVRI---GGQLLEIHHWVTPYRDRQGRVLGL 217

Query: 559 ----HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E ++   +L  A + A++ +  KS FLA +SHEIRTP+ A+IG  E +  QR
Sbjct: 218 MNGWIDITERERLARQLREAMRQADEANRAKSVFLATMSHEIRTPMNAVIGILE-LVLQR 276

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
             P    R          +   +  ++ D+LD++KIESG + L  E V L   V     +
Sbjct: 277 LAPEQRERAS--LEVAYEAAGSLQLLIGDILDVAKIESGHLTLTPERVRLRHVVESVRRM 334

Query: 675 VQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT- 732
            +  A +K + +     +     +L D    KQ+  N++SNAI FT  G Q+ I      
Sbjct: 335 FEGLARQKGLRLVVELDDAPGRDVLIDPLRFKQVLSNLVSNAIKFTERG-QVTIRLQERS 393

Query: 733 -SNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
                 I+R  V D+G+G+   +  +  +PF Q+   +     GTGLGL + + +VD   
Sbjct: 394 LDEGRAIVRVGVEDSGIGIAPADQARLFQPFIQVAKGRT-VQGGTGLGLAICRKLVDLMG 452

Query: 790 GKFYIFSTPAKGTLIEIIF 808
           G   + S P KGT + +  
Sbjct: 453 GDVEMHSEPGKGTRVSLDL 471


>gi|322421479|ref|YP_004200702.1| response regulator receiver sensor signal transduction histidine
           kinase [Geobacter sp. M18]
 gi|320127866|gb|ADW15426.1| response regulator receiver sensor signal transduction histidine
           kinase [Geobacter sp. M18]
          Length = 484

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 89/272 (32%), Positives = 147/272 (54%), Gaps = 21/272 (7%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E ++++     AK  AE+ S  KSDFLA +SHE+RTPL +++GFSE++ ++ FG L N +
Sbjct: 209 ELEKQQIIAHEAKIQAEEASRAKSDFLANMSHELRTPLNSVLGFSELLTDELFGHL-NAK 267

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             EY   I  SG  +L+++ND+LD+SK+E+GK  L    V   E ++  ++L+Q  A + 
Sbjct: 268 QHEYVKNILFSGRHLLNLINDILDLSKVEAGKSVLEPSMVKFREVIAGTLTLLQEKALKH 327

Query: 683 RILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH---------- 731
            + +      +    ++AD R +KQI  N+LSNA+ FTP+GG I ++             
Sbjct: 328 DVHLGLELPVDCDIELMADERKLKQIMFNLLSNAVKFTPAGGTIRVTAQRMSRSDLLAAG 387

Query: 732 ---------TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
                     + + V + V D+G+G+   ++ K  K F Q+ +      EGTGLGL L K
Sbjct: 388 KYQPGERQPEAEDFVEITVEDSGIGIKREDIPKLFKEFSQLDSPYTKEYEGTGLGLALTK 447

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
            +V+ + G+  + S   +G+      PL   +
Sbjct: 448 RLVELHGGQVGVESEIGQGSRFYFAIPLLQET 479


>gi|254236414|ref|ZP_04929737.1| hypothetical protein PACG_02396 [Pseudomonas aeruginosa C3719]
 gi|126168345|gb|EAZ53856.1| hypothetical protein PACG_02396 [Pseudomonas aeruginosa C3719]
          Length = 918

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 77/257 (29%), Positives = 133/257 (51%), Gaps = 8/257 (3%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I+  K+E  +   A + A  E+  KS FLA++SHEIRTPL  ++G  +++++        
Sbjct: 384 INALKEEGFRSRQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPLDRG-- 441

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
                Y   I  SG+ ++ ++ND+LD ++IESGK++L      L+E +S+ ++L    A 
Sbjct: 442 --QAAYVETIASSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAV 499

Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVI 738
           EKR+ +       +PR +  D   ++Q+ +N+LSNA+ FT  G   + +           
Sbjct: 500 EKRLRLHLGLDRGVPRRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVRVQRRFDEGGHER 559

Query: 739 L--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           L   V D+G+G++    +   + F Q  +S   R  G+GLGL +++ +V    G+  + S
Sbjct: 560 LLYSVSDSGIGISAQAQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSS 619

Query: 797 TPAKGTLIEIIFPLYDT 813
            P KGT   +  PL   
Sbjct: 620 EPGKGTRFSVDLPLSPA 636


>gi|82545085|ref|YP_409032.1| hybrid sensory histidine kinase BarA [Shigella boydii Sb227]
 gi|81246496|gb|ABB67204.1| sensor-regulator [Shigella boydii Sb227]
          Length = 918

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 85/333 (25%), Positives = 153/333 (45%), Gaps = 17/333 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +FG+ +   +  P    +               L   +   +             +++ +
Sbjct: 193 IFGWRLMRDVTGPIRNMVNTVDR-----IRRGQLDSRVEGFMLGELDMLKNGINSMAMSL 247

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 248 AAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTP 307

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+ +       P       ++ N I+RS N +L I+ND+LD SK+E+GK+ L  
Sbjct: 308 LNGVIGFTRLTLKTELTPT----QRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILES 363

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P  L   + E ++L+   +++K + +  +  +++P  ++ D   ++QI  N++ NAI F
Sbjct: 364 IPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKF 423

Query: 719 TPSGGQ-IIISTTHTSNEEVILRV--RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T +G   I++     SN +V + V  RDTG+G+   +  +  + F Q   S   R  GTG
Sbjct: 424 TENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTG 483

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           LGL + + +V+   G     S P +G+      
Sbjct: 484 LGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516


>gi|193065094|ref|ZP_03046168.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           E22]
 gi|192927225|gb|EDV81845.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           E22]
          Length = 918

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 85/333 (25%), Positives = 153/333 (45%), Gaps = 17/333 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +FG+ +   +  P    +               L   +   +             +++ +
Sbjct: 193 IFGWRLMRDVTGPIRNMVNTVDR-----IRRGQLDSRVEGFMLGELDMLKNGINSMAMSL 247

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 248 AAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTP 307

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+ +       P       ++ N I+RS N +L I+ND+LD SK+E+GK+ L  
Sbjct: 308 LNGVIGFTRLTLKTELTPT----QRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILES 363

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P  L   + E ++L+   +++K + +  +  +++P  ++ D   ++QI  N++ NAI F
Sbjct: 364 IPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKF 423

Query: 719 TPSGGQ-IIISTTHTSNEEVILRV--RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T +G   I++     SN +V + V  RDTG+G+   +  +  + F Q   S   R  GTG
Sbjct: 424 TENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTG 483

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           LGL + + +V+   G     S P +G+      
Sbjct: 484 LGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516


>gi|251778968|ref|ZP_04821888.1| sensory transduction histidine kinase [Clostridium botulinum E1
           str. 'BoNT E Beluga']
 gi|243083283|gb|EES49173.1| sensory transduction histidine kinase [Clostridium botulinum E1
           str. 'BoNT E Beluga']
          Length = 515

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 105/496 (21%), Positives = 195/496 (39%), Gaps = 29/496 (5%)

Query: 320 NLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
           +     +D  P   ++        Y N  FL   K    D I     ++   D    S+ 
Sbjct: 13  DDLERILDNFPYLIWIKDQKNRYRYVNKYFLTTFKKNERDIIGKTEVINCNNDYVLGSEE 72

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
           N I  V                       EN   ++    E       N          +
Sbjct: 73  NLITEVEF--------------------NENKKYLSVYKTELPTGTKYNWMLAVARDVTL 112

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
             +   ++++++  +L S LE ++D   I+         +    K FG+  E+       
Sbjct: 113 LKKEMTKRLKVQK-RLESFLEISTDLWGILQSNYRFKDVSDNCIKTFGWTSEEFKNLNAV 171

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM 558
                +    +   +    + D +  L    L   K  K   +      L       LT 
Sbjct: 172 NLTHPDDRERILKKMDFSFNKDKKTFLLNRFLC--KNGKYKLIEWTWCCLEEGKTVLLTG 229

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            DI+E KQ   +     + A    S K++F A VSHE +TPL  I+   +++ ++    +
Sbjct: 230 RDITEKKQL-EEEKRRLEEAIAIESLKTEFFATVSHEFKTPLNIILTTVQLLADKFKNDV 288

Query: 619 GNPRYI---EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
                    +Y N I ++   +L +VN+L+DI++I+ G   L  E  ++   +   +  V
Sbjct: 289 LTEEVKINLKYINGIKQNSYRLLKLVNNLIDITQIDGGIYKLSLENCNIVSVIENIVISV 348

Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-SN 734
             Y NEK   I          +  D   +++I LN+LSNA+ +T  GG I ++ +   +N
Sbjct: 349 SKYINEKNRNIIFDTTKEEIILAIDCDKIERIILNLLSNAVKYTNRGGNIYVNLSTDINN 408

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
             VI++++D G+G+   +++   + F Q  +    R EGTG+GL + +++++ + GK  +
Sbjct: 409 NRVIVKIKDDGIGIPEKDIDSIFRRFKQSGDVFTRRCEGTGIGLSIVRSLIEMHGGKIKV 468

Query: 795 FSTPAKGTLIEIIFPL 810
            +   KG       P+
Sbjct: 469 NNEIKKGAEFIFFLPI 484


>gi|91224013|ref|ZP_01259276.1| hypothetical protein V12G01_01980 [Vibrio alginolyticus 12G01]
 gi|91190924|gb|EAS77190.1| hypothetical protein V12G01_01980 [Vibrio alginolyticus 12G01]
          Length = 878

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 83/258 (32%), Positives = 131/258 (50%), Gaps = 11/258 (4%)

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
               + E +++  ++ HAK+ A   +  KS FLA +SHEIRTPL  I+G +E++      
Sbjct: 351 VNRVVEEMQRQTEEILHAKESAVSANRAKSVFLANMSHEIRTPLNGIMGMTEILSQSELS 410

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
                   E  + ID S   +L ++ND+LD+SKIESG++ L      + E V +++ L Q
Sbjct: 411 S----HQQEVVDDIDSSSQTLLTLLNDILDLSKIESGRLELSLVEADIREVVYQSMILFQ 466

Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS-- 733
             A  K++ +  + A NIP R++ D   VKQ+  N++SNA+ FT SG  + +  ++    
Sbjct: 467 SKATSKQLKLGINLAENIPIRVMVDDHRVKQVVTNLVSNAVKFTESG-HVCVDVSYEELL 525

Query: 734 ---NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
                 +  +V DTG+G+   +L    +PF Q       +  GTGLGL +   +V    G
Sbjct: 526 EKERGVLTFKVEDTGIGIDQDKLTTIFEPFTQEDEGVSRQFGGTGLGLAICCQLVSMMGG 585

Query: 791 KFYIFSTPAKGTLIEIIF 808
           K    ST   GT  E   
Sbjct: 586 KLVATSTKGVGTCFEFSI 603


>gi|90580330|ref|ZP_01236137.1| putative sensor histidine kinase/response regulator [Vibrio
           angustum S14]
 gi|90438632|gb|EAS63816.1| putative sensor histidine kinase/response regulator [Vibrio
           angustum S14]
          Length = 931

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 86/341 (25%), Positives = 157/341 (46%), Gaps = 19/341 (5%)

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
           F Y +   + +P +  +      V++      L + +   L             +++ + 
Sbjct: 191 FAYRLMQDVTQPISHMIS-----VVDRIRRGHLDIRIEGRLLGELDTLKNGINAMAISLS 245

Query: 545 IKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
              +           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTPL
Sbjct: 246 EYHIEMQQSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPL 305

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
             +IGF+  +   +     N    +Y   I+ S N +L I+ND+LD SK+E+GK+ L   
Sbjct: 306 NGVIGFTRQMLKTKL----NTSQKDYLLTIENSANNLLTIINDILDFSKLEAGKLLLENI 361

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFT 719
           P    +++ E + L+   A+EK + +     + IP  ++ D   ++Q+  N++ NA+ FT
Sbjct: 362 PFDFTDSLDEVMRLLAPSAHEKGLELTLKIDDRIPAGLIGDPLRIQQVVTNLIGNAVKFT 421

Query: 720 PSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
             G  I +S    S+ +    +   VRDTG+G++  +  +  + F Q   S   R  GTG
Sbjct: 422 EHG-NIDVSVELKSDVDNNIALQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTG 480

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           LGL + + +V    G+  + S   +G+       +  T  P
Sbjct: 481 LGLVITQKLVSQMGGEVSLTSRLHQGSTFWFTIQMNKTDLP 521


>gi|24114070|ref|NP_708580.1| hybrid sensory histidine kinase BarA [Shigella flexneri 2a str.
           301]
 gi|30064131|ref|NP_838302.1| hybrid sensory histidine kinase BarA [Shigella flexneri 2a str.
           2457T]
 gi|28558062|sp|P59342|BARA_SHIFL RecName: Full=Signal transduction histidine-protein kinase BarA
 gi|24053197|gb|AAN44287.1| sensor-regulator [Shigella flexneri 2a str. 301]
 gi|30042387|gb|AAP18112.1| sensor-regulator [Shigella flexneri 2a str. 2457T]
 gi|281602146|gb|ADA75130.1| Signal transduction histidine-protein kinase barA [Shigella
           flexneri 2002017]
 gi|313647846|gb|EFS12292.1| signal transduction histidine-protein kinase barA [Shigella
           flexneri 2a str. 2457T]
 gi|332753502|gb|EGJ83882.1| signal transduction histidine-protein kinase barA [Shigella
           flexneri 4343-70]
 gi|332753638|gb|EGJ84017.1| signal transduction histidine-protein kinase barA [Shigella
           flexneri K-671]
 gi|332754699|gb|EGJ85065.1| signal transduction histidine-protein kinase barA [Shigella
           flexneri 2747-71]
 gi|332765737|gb|EGJ95950.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Shigella flexneri 2930-71]
 gi|333000195|gb|EGK19778.1| signal transduction histidine-protein kinase barA [Shigella
           flexneri K-218]
 gi|333015336|gb|EGK34676.1| signal transduction histidine-protein kinase barA [Shigella
           flexneri K-304]
          Length = 918

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 85/333 (25%), Positives = 153/333 (45%), Gaps = 17/333 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +FG+ +   +  P    +               L   +   +             +++ +
Sbjct: 193 IFGWRLMRDVTGPIRNMVNTVDR-----IRRGQLDSRVEGFMLGELDMLKNGINSMAMSL 247

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 248 AAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTP 307

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+ +       P       ++ N I+RS N +L I+ND+LD SK+E+GK+ L  
Sbjct: 308 LNGVIGFTRLTLKTELTPT----QRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILES 363

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P  L   + E ++L+   +++K + +  +  +++P  ++ D   ++QI  N++ NAI F
Sbjct: 364 IPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKF 423

Query: 719 TPSGGQ-IIISTTHTSNEEVILRV--RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T +G   I++     SN +V + V  RDTG+G+   +  +  + F Q   S   R  GTG
Sbjct: 424 TENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTG 483

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           LGL + + +V+   G     S P +G+      
Sbjct: 484 LGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516


>gi|332293070|ref|YP_004431679.1| PAS/PAC sensor hybrid histidine kinase [Krokinobacter diaphorus
            4H-3-7-5]
 gi|332171156|gb|AEE20411.1| PAS/PAC sensor hybrid histidine kinase [Krokinobacter diaphorus
            4H-3-7-5]
          Length = 1216

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 118/769 (15%), Positives = 254/769 (33%), Gaps = 63/769 (8%)

Query: 87   WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS----DILHIDP-NNHIGDLLKRQN 141
            W  +      E S+ +    G    +  G     V         ++  ++ I     +  
Sbjct: 321  WIFNTDVRKMEWSKVMFHIWGFDPSQ--GTPPYKVLLNHVHPDDMELWDSCIKRASSQGI 378

Query: 142  TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
             +  +  +   +GT   +       P+   N    G +G G                   
Sbjct: 379  PYDIEHRICLPDGTQKVIRCI--CEPVLGPNGTVIGLKGTG--QDITEQKLIDEALIEAK 434

Query: 202  KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
            +K                +   +   QS    L + N+       +  ++ + KT    +
Sbjct: 435  EKAEESKNHLNSIIKNIGDPVFVKDDQS---RLVIVNEAFCTLFGFERQEIIGKTLAEEV 491

Query: 262  LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH------------- 308
              +E  +    +    I+  +   ++     +  ++      +                 
Sbjct: 492  SPAEREAFLSIDKQLIIDGIENITEESLTIREGETQRISTRKTRFIDSNGNIFIVGVIHD 551

Query: 309  -----------PSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKS 356
                              +E E      +        V++    +   N     +  +  
Sbjct: 552  ITERFKTENLIKEAKERAEENEERFRILMLNLEAGVVVHAPDTSIVQCNYRASQILGFDE 611

Query: 357  VDDIEIAGGLSTL-LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
                   G    L L     S        +   +       +  +   + ++E+   +T 
Sbjct: 612  KYVQGKTGESMELKLVNLNASPLAIADYPVNKIAKTKESIKNQVIGLKREDKEDITWVTL 671

Query: 416  IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI-------EVMQLCSILEATSDGIAII 468
              F   +   E      I  +    R N++              +L         G  ++
Sbjct: 672  NGFPVLSSTGEIKEIVMIFIDITAQRQNEKDKLKAKLLLDKTEKELSDAQALAKIGSWLV 731

Query: 469  NREGIILSTNRAVSKLFGYPVEDILRKPFTVF--LEQNTPSVMNHYLTEILSLDLRQTLE 526
                + +  ++ +  ++GY       +  +V   +  +   ++ + + E  +      +E
Sbjct: 732  KPLTMKMEWSKEMYNIWGYKYGKDNPEYLSVIDRVHPDDREILKNAVDEATNSGAPYKIE 791

Query: 527  KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM----HDISEWKQEKNKLSHAKKIAEKES 582
                     +K   +R I + +   +   +++     DI++ K    +L  AK+ AE+  
Sbjct: 792  YRICIPDHPQKT--VRAICQPIMDDAGNVISLAGTNQDITQQKLLSRELISAKEKAEESD 849

Query: 583  SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
              KS FLA +SHE+RTP+  I+GFSE+++ +    +   +   Y   I++ G+ +L  ++
Sbjct: 850  RLKSAFLANLSHEMRTPMNGILGFSELLRRKN---ISEEKRDIYLELIEKEGHRLLSFIS 906

Query: 643  DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS--FANNIPRILAD 700
            +++DISKIES  +++    V+L+  + +  S   L      + +       +    I  D
Sbjct: 907  NIVDISKIESNIIHIDNSRVNLNIIIKDIYSKYLLKLENSGVKLIIEMGLDDADSFIETD 966

Query: 701  LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760
               + QI  N+L NAI FT  G  I    +      +   V+D+G+G+   E +     F
Sbjct: 967  ENKLVQIISNLLENAIKFTKQG-TIEFGYSLYEKN-LKFFVKDSGIGIEEEEQKNIFDRF 1024

Query: 761  GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             Q    Q     G GLGL + + ++    G+ +I S   +G+      P
Sbjct: 1025 TQGRREQTHNL-GVGLGLSIVEGLIKLLNGEVWIDSQIGEGSTFFFTIP 1072



 Score = 51.2 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 40/412 (9%), Positives = 94/412 (22%), Gaps = 50/412 (12%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI-GDLLKRQNTWY 144
            +  D    L  ++E      G    ++IG  L +       +    I   L+       
Sbjct: 455 VFVKDDQSRLVIVNEAFCTLFGFERQEIIGKTLAEEVSPAEREAFLSIDKQLIIDGIENI 514

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            + +L   EG    +            N         G++H          L K   ++ 
Sbjct: 515 TEESLTIREGETQRISTR--KTRFIDSNGNI---FIVGVIHDITERFKTENLIKEAKERA 569

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
               E  +      +    + +  +       +       +    +    ++ +  L+  
Sbjct: 570 EENEERFRILMLNLEAGVVVHAPDTSIVQCNYRASQILGFDEKYVQGKTGESMELKLVNL 629

Query: 265 EESSLP-----------------------EQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301
             S L                        ++ED   I            +     +    
Sbjct: 630 NASPLAIADYPVNKIAKTKESIKNQVIGLKREDKEDITWVTLNGFPVLSSTGEIKEIVMI 689

Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY--------ANPSFLLLTK 353
           ++             + + L  +T  +      +   G+            +     +  
Sbjct: 690 FIDITAQRQNEKDKLKAKLLLDKTEKELSDAQALAKIGSWLVKPLTMKMEWSKEMYNIWG 749

Query: 354 YKSVDDIEI-AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
           YK   D       +  +    +    NA+                 R   I         
Sbjct: 750 YKYGKDNPEYLSVIDRVHPDDREILKNAVDEATNS---GAPYKIEYR---ICIPDHPQKT 803

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM------EIEVMQLCSIL 458
           +  I     +     +   G   +    ++  R++        E  +L S  
Sbjct: 804 VRAICQPIMDDAGNVISLAGTNQDITQQKLLSRELISAKEKAEESDRLKSAF 855


>gi|331653654|ref|ZP_08354655.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           M718]
 gi|331048503|gb|EGI20579.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           M718]
          Length = 612

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 82/371 (22%), Positives = 170/371 (45%), Gaps = 28/371 (7%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            + +         I+E  +DG+  I+R+G + + N A   + GY   +++ +P+++    
Sbjct: 258 AQALRETRTLNDLIIENAADGVIAIDRQGDVTTMNPAAEVITGYQRHELVGQPYSMLF-- 315

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMH 559
              +     + + L                ++ + + L +   ++  +        +   
Sbjct: 316 -DNTQFYSPVLDTLEHGTEHV-ALEISFPGRD-RTIELSVTTSRIHNTHGEMIGALVIFS 372

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           D++  K+ + +++ A+++A        + +A V+HE+R PLTAI G+ ++++ Q    + 
Sbjct: 373 DLTVRKETQRRMAQAERLAT-----LGELMAGVAHEVRNPLTAIRGYVQILRQQTSDLI- 426

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
              + EY + + +  + +  ++  LL+ S+    +    ++ VSL+  V E + LVQ   
Sbjct: 427 ---HQEYLSVVLKEIDSINKVIQQLLEFSRPRHSQ----WQQVSLNALVEETLVLVQTAG 479

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
            + R+   +   N +  I AD   +KQ+ LNIL NA+    + G+I I T   S+ +  +
Sbjct: 480 VQARVDFISELDNELNPINADRELLKQVLLNILINAVQAISARGKIRIQTWQYSDSQQAI 539

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            + D G G+     +K   PF     S      GTGLGL L++ +++A+ G   + S P 
Sbjct: 540 SIEDNGCGIDLSLQKKIFDPFFTTKAS------GTGLGLALSQRIINAHQGDIRVASLPG 593

Query: 800 KGTLIEIIFPL 810
            G    +I P+
Sbjct: 594 YGATFTLILPI 604



 Score = 40.8 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/228 (9%), Positives = 58/228 (25%), Gaps = 7/228 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G +  ++       G    +++G     +    +    + + D L+          
Sbjct: 282 IDRQGDVTTMNPAAEVITGYQRHELVGQPYSMLF--DNTQFYSPVLDTLEHGTEHVALEI 339

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGF-RGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
            +P     + + +  +   I++ + E  G    F  + V +      A  +RL      +
Sbjct: 340 SFPGRDRTIELSVTTS--RIHNTHGEMIGALVIFSDLTVRKETQRRMAQAERLATLGELM 397

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
             +     +                   +  +  S+        + +  +         S
Sbjct: 398 AGVAHEVRNPLTAIRGYVQILRQQTSDLIHQEYLSVVLKEIDSINKVIQQLLEFSRPRHS 457

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
                +      + +         +Q       E  +  N  +     
Sbjct: 458 QWQ--QVSLNALVEETLVLVQTAGVQARVDFISELDNELNPINADREL 503


>gi|324112762|gb|EGC06738.1| hsp90-like protein [Escherichia fergusonii B253]
          Length = 608

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 83/371 (22%), Positives = 161/371 (43%), Gaps = 28/371 (7%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
              +         I+E  +D +  I+R+G +++ N A   + GY  ++++ +P+      
Sbjct: 254 AEALRESKTLNDLIIENAADAVIAIDRQGDVITMNPAAEAITGYKRQELVGQPYATLFAN 313

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMH 559
                    L  +        LE    G     + + +     ++           +   
Sbjct: 314 THFYS--PVLDTLAHGIEHMALEISYPGRD---RTIEISATTSRIHDGHGEMIGALVIFS 368

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           D++  K+ + +L+  +++A        + +A V+HE+R PLTAI G+ ++I+ Q      
Sbjct: 369 DLTARKESQRRLAQTERLAT-----LGELMAGVAHEVRNPLTAIRGYVQIIRQQ----TP 419

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
            P + EY + +    + +  ++  LLD S+    +    ++ V L+  + E + L Q   
Sbjct: 420 QPEHQEYLSIVLNEIDSINKVIQQLLDFSRPRKSQ----WQQVYLNALIEETLILAQTSG 475

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
            + RI   T  A ++  I+AD   +KQ+ LN+L NA+    + G+I I T   +  +  +
Sbjct: 476 VQARIDFITELAPSLTAIVADRELLKQVILNMLINAVQAITARGEIRIRTWMYTANQQAI 535

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            + D G G+      K   PF     S      GTGLGL L++ +++A+ G   + S P 
Sbjct: 536 TIEDNGCGIDLSLQRKIFDPFFTTKAS------GTGLGLALSQRIINAHQGDIRVASLPG 589

Query: 800 KGTLIEIIFPL 810
            G    +I P+
Sbjct: 590 CGATFTLILPI 600



 Score = 46.2 bits (108), Expect = 0.023,   Method: Composition-based stats.
 Identities = 28/228 (12%), Positives = 55/228 (24%), Gaps = 7/228 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G +  ++       G    +++G     +    H    + + D L           
Sbjct: 278 IDRQGDVITMNPAAEAITGYKRQELVGQPYATLFANTHF--YSPVLDTLAHGIEHMALEI 335

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGF-RGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
            +P  G +  + I      I+  + E  G    F  +   +      A  +RL      +
Sbjct: 336 SYP--GRDRTIEISATTSRIHDGHGEMIGALVIFSDLTARKESQRRLAQTERLATLGELM 393

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
             +   H             Q              L+      D + K  +  L  S   
Sbjct: 394 AGV--AHEVRNPLTAIRGYVQIIRQQTPQPEHQEYLSIVLNEIDSINKVIQQLLDFSRPR 451

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
               Q+ +    + +         +Q       E              
Sbjct: 452 KSQWQQVYLNALIEETLILAQTSGVQARIDFITELAPSLTAIVADREL 499


>gi|303325669|ref|ZP_07356112.1| probable sensor/response regulatory hybrid protein [Desulfovibrio
           sp. 3_1_syn3]
 gi|302863585|gb|EFL86516.1| probable sensor/response regulatory hybrid protein [Desulfovibrio
           sp. 3_1_syn3]
          Length = 885

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 98/516 (18%), Positives = 200/516 (38%), Gaps = 42/516 (8%)

Query: 330 PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389
           P     +    L +   ++       S D ++               +N   +   L R+
Sbjct: 211 PSAMDFFDGQGLSFMVSAWTGEYLIASPDALKQGNKTDFYAALAASPENKPERIAALRRA 270

Query: 390 DRTCIAASARLHTIQW----------NRENSLAMTFIPFEKANQFPENMPQNGIEP---- 435
                + S  ++                 N   ++ +P +  +Q    +           
Sbjct: 271 MNEGKSGSVVMNVQGRQTYLYYTPIFPTNNWDMVSMVPVDAMHQAANYVNALVAIVCLLI 330

Query: 436 -------EDVDTRINKRKMEIEVMQLCS----ILEATSDGIAII----NREGIILSTNRA 480
                    +  R     ++I+           L  ++D + +I     R    +  N  
Sbjct: 331 LAGLLVMFSLTRRHRAMALKIKARHYRDFLFHTLSGSTDSVFLIYNASRRSMEYVFEN-- 388

Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
           + ++ G P+   L  P  +F                 +       E+  + +    +   
Sbjct: 389 LERVLGIPMRACLENPAALFKHCIFKPGSRLREDFEAASIRDARSEECYIINPATGEKCW 448

Query: 541 LRIIIKKLPFSSC---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
           ++  +     +     Y +++ DI+E K  +  L  +   A++ S  KS FL+ +SH+IR
Sbjct: 449 IKFSLVPRDDADGQTYYVISLSDITEEKAVRRLLKDSLAAAKQASKAKSSFLSAMSHDIR 508

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TP+ AIIG + + +     P    R  +  + I  +  L+L I+N++LD+SKIESGK+ L
Sbjct: 509 TPMNAIIGMATIAERHAGDP---ERVRDCLDKISVASRLLLGIINEVLDMSKIESGKLLL 565

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
              P  L++ + + + +++     ++         + P +  D + ++QI LN+LSNA  
Sbjct: 566 SNAPFDLNDLIRDTLDMIRPMLESRQHEFHLHMDISQPALQGDTQRIQQILLNLLSNAAK 625

Query: 718 FTPSGGQIIISTTHTSN-----EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           +TP  G+I +S +  +        +I+ V D G GM+    ++    F +  + +  R +
Sbjct: 626 YTPDKGRISLSISEKATLAPPMSRIIIVVEDNGFGMSPEFQKRIYDSFARSDDERVHRIQ 685

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           GTGLG+P+ + +     G   I S   +G+   +  
Sbjct: 686 GTGLGMPIVRNLARMMHGSITIESELNQGSRFTVEL 721


>gi|284922723|emb|CBG35811.1| two-component sensor kinase/response regulator [Escherichia coli
           042]
          Length = 918

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 85/333 (25%), Positives = 153/333 (45%), Gaps = 17/333 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +FG+ +   +  P    +               L   +   +             +++ +
Sbjct: 193 IFGWRLMRDVTGPIRNMVNTVDR-----IRRGQLDSRVEGFMLGELDMLKNGINSMAMSL 247

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 248 AAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTP 307

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+ +       P       ++ N I+RS N +L I+ND+LD SK+E+GK+ L  
Sbjct: 308 LNGVIGFTRLTLKTELTPT----QRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILES 363

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P  L   + E ++L+   +++K + +  +  +++P  ++ D   ++QI  N++ NAI F
Sbjct: 364 IPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKF 423

Query: 719 TPSGGQ-IIISTTHTSNEEVILRV--RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T +G   I++     SN +V + V  RDTG+G+   +  +  + F Q   S   R  GTG
Sbjct: 424 TENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTG 483

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           LGL + + +V+   G     S P +G+      
Sbjct: 484 LGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516


>gi|285017115|ref|YP_003374826.1| two-component system sensor-response regulator hybrid protein
           [Xanthomonas albilineans GPE PC73]
 gi|283472333|emb|CBA14839.1| hypothetical two-component system sensor-response regulator hybrid
           protein [Xanthomonas albilineans]
          Length = 838

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 75/260 (28%), Positives = 121/260 (46%), Gaps = 10/260 (3%)

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
               D+   ++ + +L  AK+ AE     K +FLA +SHEIRTPL  II   E+I +   
Sbjct: 82  ALQRDVHLRERLERELVQAKQAAEAAVLAKGEFLATMSHEIRTPLNGIIPMLELIAHSPL 141

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
               +    E     + S   +L IV+D+LD SK+E+ ++ L     +L E + + + L+
Sbjct: 142 ----DLDQREMLRAANTSSLQLLRIVDDILDYSKLEANRLELETTAFNLRELLDDVLQLM 197

Query: 676 QLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH--- 731
           Q  A  K + +       +   +  D   ++Q+  N+L NAI FT  GG I +       
Sbjct: 198 QRAAEAKGLRMALQLDRAVRLPVRGDPVRLRQVLSNLLGNAIKFTARGG-IDLHVRRLGE 256

Query: 732 -TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
             +   +   VRDTG+G++    E+  + F Q   S      GTGLGL + K +V+   G
Sbjct: 257 SPAQHVLRFEVRDTGIGISAERQERLFQAFTQADASTTRLYGGTGLGLAICKRIVELMGG 316

Query: 791 KFYIFSTPAKGTLIEIIFPL 810
           +  + S    G +     PL
Sbjct: 317 RIGLESKLDHGAIFWFEIPL 336


>gi|253772363|ref|YP_003035194.1| hybrid sensory histidine kinase BarA [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254162712|ref|YP_003045820.1| hybrid sensory histidine kinase BarA [Escherichia coli B str.
           REL606]
 gi|242378333|emb|CAQ33110.1| BarA sensory histidine kinase [Escherichia coli BL21(DE3)]
 gi|253323407|gb|ACT28009.1| Hpt sensor hybrid histidine kinase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253974613|gb|ACT40284.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli B str. REL606]
 gi|253978778|gb|ACT44448.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli BL21(DE3)]
          Length = 918

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 85/333 (25%), Positives = 153/333 (45%), Gaps = 17/333 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +FG+ +   +  P    +               L   +   +             +++ +
Sbjct: 193 IFGWRLMRDVTGPIRNMVNTVDR-----IRRGQLDSRVEGFMLGELDMLKNGINSMAMSL 247

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 248 AAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTP 307

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+ +       P       ++ N I+RS N +L I+ND+LD SK+E+GK+ L  
Sbjct: 308 LNGVIGFTRLTLKTELTPT----QRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILES 363

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P  L   + E ++L+   +++K + +  +  +++P  ++ D   ++QI  N++ NAI F
Sbjct: 364 IPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKF 423

Query: 719 TPSGGQ-IIISTTHTSNEEVILRV--RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T +G   I++     SN +V + V  RDTG+G+   +  +  + F Q   S   R  GTG
Sbjct: 424 TENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTG 483

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           LGL + + +V+   G     S P +G+      
Sbjct: 484 LGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516


>gi|218682383|ref|ZP_03529984.1| probable two-component sensor histidine kinase protein [Rhizobium
           etli CIAT 894]
          Length = 468

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 102/249 (40%), Positives = 154/249 (61%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I+E +  K+    A++ AE+ +  KS FLA +SHE+RTPL AI+GFSEV+  +  GPL N
Sbjct: 195 IAELEVAKSMSDEARRRAEEANLAKSRFLASMSHELRTPLNAILGFSEVMSAEVMGPLAN 254

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
           P Y EYA  I RSG  +LD++N++LD+S+IE+GK  L  E +SL +   + I +VQL A 
Sbjct: 255 PTYKEYAGDIHRSGQHLLDLINEILDLSRIEAGKYELSEEAISLLDITEDCIGMVQLRAR 314

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
            K I I   F   +P I AD +S++Q+ LN+LSNA+ FTP GG+I +    T+     + 
Sbjct: 315 AKNIAISDQFERQLPAIWADEKSMRQVVLNLLSNAVKFTPQGGEIHVKVGWTAGGGQYIS 374

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           ++D G G+   E+   +  FGQ   + +   +GTGLGLP+ +A++  + G+F + S   +
Sbjct: 375 IKDNGPGIPEEEIPIVLSAFGQGSIAIKSAEQGTGLGLPIVQAILAKHDGQFLLKSKLRE 434

Query: 801 GTLIEIIFP 809
           GT +  I P
Sbjct: 435 GTEVIAILP 443


>gi|254419079|ref|ZP_05032803.1| PAS fold family [Brevundimonas sp. BAL3]
 gi|196185256|gb|EDX80232.1| PAS fold family [Brevundimonas sp. BAL3]
          Length = 782

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 110/714 (15%), Positives = 229/714 (32%), Gaps = 35/714 (4%)

Query: 107 GNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL--WPIEGTNLYVPIDLA 164
           G  +   IG    ++ D L     +  G  L  +        +      G      I+L 
Sbjct: 71  GEASGAPIG--PPELIDRLTEASGDTAGHALLTRLKTSYVVLIDGLVTAGKAFEGLIELG 128

Query: 165 ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDI 224
            +  +      +G  G   + ++             +   + L +     + V      +
Sbjct: 129 DVEPWRIEGRVAG--GGAWLRLSPASRVMLTGADATESGLALLGDASPIPTWVVDGAGKL 186

Query: 225 FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYT 284
                   H    + V    E   +K          L+         QE F       + 
Sbjct: 187 AWANRVWLHEIGADSV----ETARNKGLSFDRGADALVAEAGRLGVRQEGFRWTTGGGHR 242

Query: 285 KKQYF-GTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLF 342
           +              +   +                +   ET++       ++     L 
Sbjct: 243 RAWRIIAEPAGGGAVTAFAIEVTEAEETRDTLRRHVDAHDETLNHLADAVAIFGPSKRLA 302

Query: 343 YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT 402
           + N +F  L        ++     + LLD  +                R          +
Sbjct: 303 FHNTAFQTLFDI-DPAWLDERPTHAELLDRLRQRRRLPEVMDYAGWKAREL---EFYGAS 358

Query: 403 IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
                ++             Q         I  +  D    + +   ++    + L+  +
Sbjct: 359 QASPDDSWSLPDGRTLRVVRQPHPLGGILLIFSDITDELNLRSRFNAQIQVQTATLDKLN 418

Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ------NTPSVMNHYLTEI 516
           D +A+   +G +   N A    +    E I        L +        P++       +
Sbjct: 419 DAVAVFGSDGRLRLHNEAFETFWKLSAEQIAGSTDFDALAELCKAVLPDPALWLGLKARV 478

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKK 576
              D    +     G T + ++ + +             +   DI+  +  +  L   ++
Sbjct: 479 ADPDPESRVAISGEGRTIDGRIAAWQTRPLP---DGATLVAFSDITARRGLEQALVQREQ 535

Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
              +  + K +F+  VS+E+RTPLT I+G+SE+++     P    R  ++A  I  + + 
Sbjct: 536 ALAESQALKREFVGSVSYELRTPLTTIVGYSELLETMGDLP---ERGRQHAGAIRVAASQ 592

Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696
           +   ++D+LD+++I++G+M L    V + + + +A   V+     +   +  +    +  
Sbjct: 593 LARSIDDVLDMAQIDAGEMELSLGDVRVQDLLEQAAERVRAKVEGRGATLTVTCPPGLKP 652

Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKA 756
           I AD   + Q   ++L NA      GG + +S     +E   + V D+G G+  +     
Sbjct: 653 IRADDHRIGQALNHLLENAARAVSEGGAVTLSAEMAPSEM-RVTVSDSGRGIPYHLQAHV 711

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
              F +          G G+GL L KA+V+ + G   + S P KG    +  PL
Sbjct: 712 FDRFVR------RERGGPGVGLALVKALVELHGGWAEVESEPGKGAAFILHLPL 759



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 50/415 (12%), Positives = 99/415 (23%), Gaps = 41/415 (9%)

Query: 57  QNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGM 116
                V  T    +E+          +  TW +D  G L   +      IG  + +    
Sbjct: 149 SPASRVMLTGADATESGLALLGDASPIP-TWVVDGAGKLAWANRVWLHEIGADSVE---- 203

Query: 117 RLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFS 176
              +         +  + +    +     +   W   G +      + A P        +
Sbjct: 204 TARNKGLSFDRGADALVAEA--GRLGVRQEGFRWTTGGGHRRAWRII-AEPAGG--GAVT 258

Query: 177 GFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM 236
            F     + V   +     L + +D     L+ +    +     K   F   +      +
Sbjct: 259 AFA----IEVTEAEETRDTLRRHVDAHDETLNHLADAVAIFGPSKRLAFHNTAFQTLFDI 314

Query: 237 KNKVSSLTEYYAHKD-------------DVLKTEKYPLLTSEESSLPEQEDFHTINLNQY 283
                     +A                D    +   L     S     + +   +    
Sbjct: 315 DPAWLDERPTHAELLDRLRQRRRLPEVMDYAGWKARELEFYGASQASPDDSWSLPDGRTL 374

Query: 284 TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY-SHGNLF 342
              +    L              +  +L + F+    +   T+DK      V+ S G L 
Sbjct: 375 RVVRQPHPLGGILLIFS---DITDELNLRSRFNAQIQVQTATLDKLNDAVAVFGSDGRLR 431

Query: 343 YANPSFLLLTKYKSVDDIEIAGGLSTL--LDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400
             N +F    K  S + I  +     L  L    L D      +    +D    +  A  
Sbjct: 432 LHNEAFETFWKL-SAEQIAGSTDFDALAELCKAVLPDPALWLGLKARVADPDPESRVAIS 490

Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
              +       A    P                  +    R  ++ +      L 
Sbjct: 491 GEGRTIDGRIAAWQTRPLPDGA-------TLVAFSDITARRGLEQALVQREQALA 538


>gi|167748589|ref|ZP_02420716.1| hypothetical protein ANACAC_03362 [Anaerostipes caccae DSM 14662]
 gi|167651903|gb|EDR96032.1| hypothetical protein ANACAC_03362 [Anaerostipes caccae DSM 14662]
          Length = 1088

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 96/513 (18%), Positives = 198/513 (38%), Gaps = 40/513 (7%)

Query: 324 ETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
           +  +      +        Y N  F       S++          +    +     A  P
Sbjct: 428 DLEEDIQEAIWQEDT---IYRNREFPK----GSLERYYGKFVREHVFAEDREKMQRAGSP 480

Query: 384 VMLYRSDRTCIAA-SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             L ++              I  +R   +   F   E  +     +    +   +     
Sbjct: 481 EFLRQTLSEENPVYDVDFRRIYPDRLGWVRSRFSIAEMRDGKVTKVVFANMNINEQKMEE 540

Query: 443 NKRKMEIEVM-QLCSILEATSD---GIAIIN-REGIILSTNRAVSKLFGY----PVEDIL 493
            + + + ++  +  +I++  S     +  ++  +    S +     L GY       + L
Sbjct: 541 YEEEKQKKLYFESRNIIKGLSSFYHSVFYVDLADESFQSFSIR-KDLEGYLDGSDRYEKL 599

Query: 494 RKPFTVFLEQNTPSVMNHYLT----EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
           +  +   + +N        L+                +       +     +RI I    
Sbjct: 600 KSAYMKLIHENERDKFAGELSVDSIRQRIGAGETIYAREFR-RDYDGCYGWMRIHIILAE 658

Query: 550 FSSCYSL--------TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
             +   +           +  + ++ +  L  A + A+K +  KS FLA++SH+IRTP+ 
Sbjct: 659 SRNGIPVKVILAAHSVEEEKEQEERNRKALLAAYEAAKKANEAKSSFLAQMSHDIRTPMN 718

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           AI+G + +  ++   P    +  E    ID S + +LD++N++LD+SKIE GK+ L  EP
Sbjct: 719 AIMGMTSIAASRINDP---EKVRECLTKIDMSSSHLLDLINEILDMSKIEKGKIELTEEP 775

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTP 720
             L E +++  S+ +  A +K   +     + +    + D   ++Q+ +N+++NA+ +T 
Sbjct: 776 FCLRELITDINSITRPEALQKGQELLFRTVDVVHTDFIGDAGRIRQVLINLITNAVKYTQ 835

Query: 721 SGGQIIISTTHTSN-----EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           +GG+II+     +         +  V D G+GM    L     PF +  +S+  R +GTG
Sbjct: 836 NGGRIIVEVQEVTGRTPGAASFVFTVEDNGIGMDPDFLNYIFVPFSRADDSKVRRVQGTG 895

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           LG+ +A+ +V A  G     S   +G+   +  
Sbjct: 896 LGMSIAQGIVSAMNGNIQAESRKGQGSRFIVTL 928


>gi|284989871|ref|YP_003408425.1| PAS/PAC sensor signal transduction histidine kinase
           [Geodermatophilus obscurus DSM 43160]
 gi|284063116|gb|ADB74054.1| PAS/PAC sensor signal transduction histidine kinase
           [Geodermatophilus obscurus DSM 43160]
          Length = 408

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 78/412 (18%), Positives = 167/412 (40%), Gaps = 39/412 (9%)

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTN 478
              +      +  ++  D +  +  R ++     + S+++A ++  I   + +G++   N
Sbjct: 13  TRLRAENAALRARMQHRDDELEVATRMLQARAQTMTSVVDAVTEQSIIGTDVDGVVRVWN 72

Query: 479 RAVSKLFGY-PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE-KITLGSTKEE 536
               ++ G    + + R+  T F            L  ++     +  + +       + 
Sbjct: 73  PGAERMLGLLRADVVRRRSITDFHLAEELLEAGGGLAALVGTAQERGRDVRDWTYVAADG 132

Query: 537 KLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
             L++ + +                  D++E +  +                K  F++ +
Sbjct: 133 TELTVSVAVTPRTDDRGVHAGWNFVGTDMTEARATE--------------RMKDQFVSLI 178

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHE+RTPLT+I+G+ E++ +    P        Y   ++R+   +L +V DLL  +++++
Sbjct: 179 SHELRTPLTSILGYLELVLDD---PSLGDEPRRYLGTVERNAQRLLRLVGDLLFTAQVDA 235

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712
           G+ +L  E V L   V  A   V++ A    + +     +    +  D   + Q   N++
Sbjct: 236 GRFSLQPESVDLAAVVRAAEETVRVTAAATGVEVVVDVPDGGLVVPGDAVRLGQACDNLV 295

Query: 713 SNAIHFTPSGGQIIISTT---HTSNEEV------------ILRVRDTGVGMTNYELEKAM 757
           SNA+ FTP+GG++ ++      T+   V             L V DTG+G+   E  +  
Sbjct: 296 SNAVKFTPAGGRVTLALRPAWRTAGGAVVATPGDDAVRVARLAVSDTGIGIPAGEQGQLF 355

Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             F +   +++    G GLGL + +A+  A+ G   + S   +GT   +  P
Sbjct: 356 ARFFRASTARRHAVPGVGLGLAITRAIAAAHDGSLEVASVEGRGTTFTLTLP 407



 Score = 43.1 bits (100), Expect = 0.19,   Method: Composition-based stats.
 Identities = 27/350 (7%), Positives = 69/350 (19%), Gaps = 18/350 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMI-GMRLCDV-SDILHIDPNNHIGDLLKRQNTWYGK 146
            D  G ++  +    + +G     ++    + D       ++    +  L+         
Sbjct: 62  TDVDGVVRVWNPGAERMLGLLRADVVRRRSITDFHLAEELLEAGGGLAALVGTAQERGRD 121

Query: 147 TTLW-PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
              W  +      + + +A  P        +G+   G                R+  +F 
Sbjct: 122 VRDWTYVAADGTELTVSVAVTPRTDDRGVHAGWNFVGT--DMTEARATE----RMKDQFV 175

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
            L   +          Y       P      +  + ++    A +   L  +       +
Sbjct: 176 SLISHELRTPLTSILGYLELVLDDPSLGDEPRRYLGTVERN-AQRLLRLVGDLLFTAQVD 234

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
                 Q +   +       ++        +              +              
Sbjct: 235 AGRFSLQPESVDLAAVVRAAEETVRVTAAATGVEVVVDVPDGGLVVPGDAVRLGQACDNL 294

Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
           V       F  + G +  A            V            L               
Sbjct: 295 VSNAVK--FTPAGGRVTLALRPAWRTAGGAVVATPGDDAVRVARLAVSDTGIGIPAGE-- 350

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
                    A   R  T + +    + +            +   +     
Sbjct: 351 ----QGQLFARFFRASTARRHAVPGVGLGLAITRAIAAAHDGSLEVASVE 396


>gi|160876397|ref|YP_001555713.1| hybrid sensory histidine kinase BarA [Shewanella baltica OS195]
 gi|160861919|gb|ABX50453.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS195]
 gi|315268587|gb|ADT95440.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS678]
          Length = 933

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 91/245 (37%), Positives = 133/245 (54%), Gaps = 8/245 (3%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  AKK A + S  KS+FLA +SHE+RTPL  +IGF+  +         +   ++Y   
Sbjct: 284 ELDLAKKRALEASRIKSEFLANMSHELRTPLNGVIGFARQLVKTPL----HSSQVDYIKT 339

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I+RS   +L I+ND+LD SK+E+GKM L   P  L E + + I+L+   A  K + +   
Sbjct: 340 IERSATNLLGIINDILDFSKLEAGKMVLENMPFGLRETIGDTITLISGSAQAKGLELVVD 399

Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVILR--VRDTG 745
            A N+P  +  D   V QI  N++ NAI FT SG   + I     S E+V+LR  V DTG
Sbjct: 400 IAPNVPDNVNGDAMRVCQIINNLVGNAIKFTDSGSVMVKIELQSQSEEQVVLRCDVVDTG 459

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+   + +   + FGQ  +S   R  GTGLGL + K +V+   G+    S+P KG+   
Sbjct: 460 IGIDESQQDFLFQAFGQADSSISRRFGGTGLGLVITKRLVNQMGGQIGFTSSPEKGSNFW 519

Query: 806 IIFPL 810
              PL
Sbjct: 520 FSLPL 524


>gi|153001659|ref|YP_001367340.1| hybrid sensory histidine kinase BarA [Shewanella baltica OS185]
 gi|151366277|gb|ABS09277.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS185]
          Length = 933

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 91/245 (37%), Positives = 133/245 (54%), Gaps = 8/245 (3%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  AKK A + S  KS+FLA +SHE+RTPL  +IGF+  +         +   ++Y   
Sbjct: 284 ELDLAKKRALEASRIKSEFLANMSHELRTPLNGVIGFARQLVKTPL----HSSQVDYIKT 339

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I+RS   +L I+ND+LD SK+E+GKM L   P  L E + + I+L+   A  K + +   
Sbjct: 340 IERSATNLLGIINDILDFSKLEAGKMVLENMPFGLRETIGDTITLISGSAQAKGLELVVD 399

Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVILR--VRDTG 745
            A N+P  +  D   V QI  N++ NAI FT SG   + I     S E+V+LR  V DTG
Sbjct: 400 IAPNVPDNVNGDAMRVCQIINNLVGNAIKFTDSGSVMVKIELQSQSEEQVVLRCDVVDTG 459

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+   + +   + FGQ  +S   R  GTGLGL + K +V+   G+    S+P KG+   
Sbjct: 460 IGIDESQQDFLFQAFGQADSSISRRFGGTGLGLVITKRLVNQMGGQIGFTSSPEKGSNFW 519

Query: 806 IIFPL 810
              PL
Sbjct: 520 FSLPL 524


>gi|298492565|ref|YP_003722742.1| multi-sensor hybrid histidine kinase ['Nostoc azollae' 0708]
 gi|298234483|gb|ADI65619.1| multi-sensor hybrid histidine kinase ['Nostoc azollae' 0708]
          Length = 1322

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 77/253 (30%), Positives = 140/253 (55%), Gaps = 15/253 (5%)

Query: 563  EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
            + +Q+  +L  A+  AE  +  KS+FLA +SHE+RTPL AI+GF++V+         N  
Sbjct: 826  QIQQQSLELEKARDAAESANRAKSEFLANMSHELRTPLNAIMGFTQVMSRDIS---LNQE 882

Query: 623  YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
            +  + + I+RSG  +L+++ND+L++SKIE+G++ L+     L   ++    L++L A+ K
Sbjct: 883  HQSHLDIINRSGQHLLELINDVLEMSKIEAGRIKLNTSSFDLYYLLTNLEDLLRLKADFK 942

Query: 683  RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----- 736
             + +    A ++P+ I +D   ++Q+ LN+L NAI FT  G ++ +     +N++     
Sbjct: 943  ELTLIFDCAQDVPQYITSDEVKLRQVLLNLLGNAIKFTQKG-KVTLRVRKINNKDYGDPI 1001

Query: 737  ---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
               ++  V DTG G+   ++++   PF Q  N      EGTGLGL +++  V    G+  
Sbjct: 1002 STSLLFEVEDTGTGIAPEDIKQLFTPFVQARN--TDAHEGTGLGLTISQKFVKLMQGEIT 1059

Query: 794  IFSTPAKGTLIEI 806
            + S   +G+    
Sbjct: 1060 VESVVGQGSTFRF 1072



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/149 (12%), Positives = 57/149 (38%), Gaps = 7/149 (4%)

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
               +  ++  +  + K+     +    ++A+ DGI   N +   +  +    ++ GY  
Sbjct: 307 FISTQQIEIKRQQAEEKLRKSEERWQLAIQASQDGIYDFNLQTAEVFYSARWKEILGYQD 366

Query: 490 EDILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
           ++I    + +T  +  +   ++    +  L+ ++   ++       K+     +    + 
Sbjct: 367 QEISNNIEEWTKRIHPDDLKLVIQTNSNHLNREIPFLMQ-EYRLQCKDGIYKWILERGQA 425

Query: 548 LPFSSC----YSLTMHDISEWKQEKNKLS 572
           L   +     +  +  DIS+ K+++  L 
Sbjct: 426 LWDENGKPTRFICSHTDISDRKRQETALQ 454


>gi|269960026|ref|ZP_06174403.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269835325|gb|EEZ89407.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 1187

 Score =  287 bits (734), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 129/612 (21%), Positives = 226/612 (36%), Gaps = 40/612 (6%)

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
           L E +K   SV ++     + Q+     R+ +KV S  E      D++         S E
Sbjct: 125 LTEQQKQSLSVMEKDATTVATQTRELTKRLASKVVSDKEEELRNRDMMVRVAEHESLSYE 184

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQ----NNSKESFEYLSHRNHPSLSAYFDEGENLT 322
            +L  Q             +           +  ++  E LS   H        +    +
Sbjct: 185 INLTAQSIRSASLEFLLFGRASDLNDAIKYTDELEQLTETLSEALHNKYELTLVQALKNS 244

Query: 323 PETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
            +            ++      N         KSVD +        +     +++  +  
Sbjct: 245 QKRYSSALSLVNQSANNEATSKNLRASSEQLAKSVDALRERIRQDLIQAQANVANLESDM 304

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
            + L       I A+    +I   R+           +  +  + +    +      TR 
Sbjct: 305 NMSL----EAGIQATLLKQSIGKARQADRDFMISTRAEKKEKHKLIVLEALAKAKAHTRS 360

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK-PFTVFL 501
            +  +  E     ++ E+    I                 KL    V ++ ++       
Sbjct: 361 IQSFLVEESN--NALFESVPSSI--------------EAYKLHFLDVVEVSQQLNDIAGK 404

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDI 561
                +  +  L  +  L   +  +   +            + I  L ++   S      
Sbjct: 405 MVMAATKADDQLDHLRELRFAEVSQFKQVSQYLIYSAFVFILAIILLAYTMRRSQI---- 460

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
            E +     L  A+  AE  +  KS FLA +SHEIRTP+ AIIG S ++         N 
Sbjct: 461 -ELQAMAATLQEARDDAESANQAKSSFLANMSHEIRTPMNAIIGMSHLVLESEL----NK 515

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
               Y   + RS   +L ++ND+LD SK+E+GK+ L   P SLDE + +AI ++ + + +
Sbjct: 516 HQKNYIEKVHRSAKSLLRLLNDILDFSKVEAGKLELERTPFSLDELLDQAIDILSVKSQD 575

Query: 682 KRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---- 736
           K + +  S   N+P+ ++ D   VKQI LN+  NAI FT  G ++ +        +    
Sbjct: 576 KSLDLLLSVDQNLPQTLIGDPYRVKQIILNLGFNAIKFTHQG-KVTLRLNLLHKTKQYST 634

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           + L V D G+GMT  +L K    F Q   S   +  G+GLGL + K ++D   G   + S
Sbjct: 635 LELVVEDEGIGMTPGQLNKLFNSFSQADTSTTRKYGGSGLGLAITKNIIDLMKGTISVTS 694

Query: 797 TPAKGTLIEIIF 808
           T  KG+  ++ F
Sbjct: 695 TLGKGSTFKVQF 706


>gi|307155197|ref|YP_003890581.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7822]
 gi|306985425|gb|ADN17306.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7822]
          Length = 675

 Score =  287 bits (734), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 84/541 (15%), Positives = 175/541 (32%), Gaps = 50/541 (9%)

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG--------NLFYANPSFL 349
           +    +   N    +      + L  + V+   +   V+            L  ANP+  
Sbjct: 149 QVRAEMEPLNPALETGQSLSFKGLFQDIVENIQMGLLVWHLEDPNDLESFRLIAANPAAN 208

Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
            L      + +               S        ++       I       +     E 
Sbjct: 209 QLIGKPLENCLGQRFVQCFPRAFTDNSVIIEAHAEVIRTRQAQAIP----KFSYTQKDEP 264

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469
           S  +T   F   N             +    R  ++ +     +   ++ +  + I   +
Sbjct: 265 SKILTLKLFPLPNN-----CVGTAFEDITQQRQTEKALVESTRRYRLVVNSVKEIIFQTD 319

Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPFTVF-LEQNTPSVMNHYLTEILSLDLRQTLEKI 528
             G     N A +++ GY V + L   F+ F                ++    ++  +  
Sbjct: 320 LSGCWSFLNPAWTEITGYTVMESLNCHFSNFIFAPEDQQHCQEMFQALIK-GEQEIFQAE 378

Query: 529 TLGSTKEEKLLSLRIIIKKLPFSS-----CYSLTMHDISEWKQEKNKLSHAKKIAEK--- 580
               T++     L +  +               T++DI+E K+ +  L        +   
Sbjct: 379 FRCQTRDGNFRWLEMTAQLHQDEESDTYLGALGTINDITERKRTEAILQARAGELTRLNA 438

Query: 581 -----------ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
                       +     F    SH+++ PL AI   S  I+      L +         
Sbjct: 439 VLLATTAQLEKRNQELDQFAYVASHDLKAPLRAIANLSVWIEEDIKDQL-DEDTRHQMEL 497

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           +    + +  ++N LL  S++  G++    E +++ E ++E +  +   +       R  
Sbjct: 498 LRGRVHRMEALINGLLQYSRV--GRLKGQTEVINVGELLTEIVDSLAPPSE-----FRIE 550

Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSG-GQIIISTTHTSNEEVILRVRDTGVGM 748
               +P ++ +   ++Q+  N++SNA+    +  G I IS      E     + D G G+
Sbjct: 551 IVEPMPTLVTESFPLRQVLTNLISNALKHHHNNEGNIQISVE-EKEEFYQFSITDDGPGI 609

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
                EK    F  +    + + E TG+GL + K  V++  GK ++ S    GT     +
Sbjct: 610 DPQYHEKIFGIFQTLEA--RDKTENTGIGLSIVKKTVESQKGKIWVDSKLGDGTTFRFTW 667

Query: 809 P 809
           P
Sbjct: 668 P 668



 Score = 57.7 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 21/261 (8%), Positives = 68/261 (26%), Gaps = 5/261 (1%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCD-VSDILHIDPNNHIGDLLKRQNTWY 144
            +  D  G    ++    +  G    + +     + +           +   L +     
Sbjct: 315 IFQTDLSGCWSFLNPAWTEITGYTVMESLNCHFSNFIFAPEDQQHCQEMFQALIKGEQEI 374

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            +           +  +++ A        + +     G ++         A+ +    + 
Sbjct: 375 FQAEFRCQTRDGNFRWLEMTAQLHQDEESD-TYLGALGTINDITERKRTEAILQARAGEL 433

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
           + L+ +    ++  +++     Q +      +K  + ++       ++ +K +       
Sbjct: 434 TRLNAVLLATTAQLEKRNQELDQFAYVASHDLKAPLRAIANLSVWIEEDIKDQLDEDTRH 493

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
           +   L  +       +N   +    G L+  ++               A   E      E
Sbjct: 494 QMELLRGRVHRMEALINGLLQYSRVGRLKGQTEVINVGELLTEIVDSLAPPSEFR---IE 550

Query: 325 TVDKCPIPFFVYSHGNLFYAN 345
            V+  P              N
Sbjct: 551 IVEPMPTLVTESFPLRQVLTN 571


>gi|194434684|ref|ZP_03066938.1| sensor histidine kinase/response regulator BarA [Shigella
           dysenteriae 1012]
 gi|194417081|gb|EDX33196.1| sensor histidine kinase/response regulator BarA [Shigella
           dysenteriae 1012]
 gi|332089100|gb|EGI94210.1| signal transduction histidine-protein kinase barA [Shigella
           dysenteriae 155-74]
          Length = 918

 Score =  287 bits (734), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 85/333 (25%), Positives = 153/333 (45%), Gaps = 17/333 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +FG+ +   +  P    +               L   +   +             +++ +
Sbjct: 193 IFGWRLMRDVTGPIRNMVNTVDR-----IRRGQLDSRVEGFMLGELDMLKNGINSMAMSL 247

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 248 AAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTP 307

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+ +       P       ++ N I+RS N +L I+ND+LD SK+E+GK+ L  
Sbjct: 308 LNGVIGFTRLTLKTELTPT----QRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILES 363

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P  L   + E ++L+   +++K + +  +  +++P  ++ D   ++QI  N++ NAI F
Sbjct: 364 IPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKF 423

Query: 719 TPSGGQ-IIISTTHTSNEEVILRV--RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T +G   I++     SN +V + V  RDTG+G+   +  +  + F Q   S   R  GTG
Sbjct: 424 TENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTG 483

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           LGL + + +V+   G     S P +G+      
Sbjct: 484 LGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516


>gi|192359994|ref|YP_001980883.1| MmoS [Cellvibrio japonicus Ueda107]
 gi|190686159|gb|ACE83837.1| MmoS [Cellvibrio japonicus Ueda107]
          Length = 803

 Score =  287 bits (734), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 78/269 (28%), Positives = 125/269 (46%), Gaps = 23/269 (8%)

Query: 557 TMHDISEWKQEKNKLSHAKKIAEK----------ESSHKSDFLARVSHEIRTPLTAIIGF 606
            + DI +    +  L   K+   +           S  KS FLA +SHEIRTP+  +IG 
Sbjct: 240 LLDDIEQRHAIELALLSEKEEKLETRRQKNAAEDASRAKSQFLATMSHEIRTPMNGVIGM 299

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
            +++++       +     Y + I RSG  +L I+ND+LD SKIE+GKM L      LD+
Sbjct: 300 LDMLRDTPL----DENQKHYIDVIHRSGETLLSIINDILDYSKIEAGKMQLEEMVFELDD 355

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI 725
            V   I L    AN++ I +      ++PR +  D   ++QI +N+L NA  FT  G  +
Sbjct: 356 LVENCIQLFGATANKRNIELFGGLNPDVPRRLRGDPTRLRQIIINLLGNAFKFTEEGF-V 414

Query: 726 IIS-----TTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
            +      T   +   ++LR  V+D+G+G+           F Q   S   +  GTGLGL
Sbjct: 415 SLEVGLDNTALQAEGRLMLRFVVQDSGIGIDPNSASNLFDSFNQADASTTRKYGGTGLGL 474

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEII 807
            + K++ +   G+  + S   +G      
Sbjct: 475 AICKSLAELMGGRIGVKSAKGEGAQFWFT 503


>gi|320102458|ref|YP_004178049.1| GAF sensor hybrid histidine kinase [Isosphaera pallida ATCC 43644]
 gi|319749740|gb|ADV61500.1| GAF sensor hybrid histidine kinase [Isosphaera pallida ATCC 43644]
          Length = 815

 Score =  287 bits (734), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 79/258 (30%), Positives = 126/258 (48%), Gaps = 14/258 (5%)

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            ++ + +L  AK+ AE+ +  KS FLA +SHEIRTP+ A+ G+SE++       +  P  
Sbjct: 368 QRETEEELRRAKQAAEEANQAKSRFLANISHEIRTPIAALCGYSEMVLE---PQMEEPER 424

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            +    I R+   +L++V+D+LD SKIE+G+M +   PVS    + + ++ +   A  K 
Sbjct: 425 RQTLLAIRRNSRHLLELVDDILDFSKIEAGEMTIEHCPVSPRWILEDLLTTMGGRARSKG 484

Query: 684 ILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS--------- 733
           I I       IP  I  D   ++QI LN LSNAI FT    +I +               
Sbjct: 485 IAIHHRIVEPIPDTITTDPTRLRQILLNFLSNAIKFTDRDKRIDLILQVEPVPASGTLHS 544

Query: 734 -NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
               ++  V D G G+    L +  +PF Q+  S   R  GTGLGL +++ + +   G  
Sbjct: 545 AANRLVFTVEDQGPGIAPENLSRLFQPFWQVDGSITRRYGGTGLGLSISQRLAELLGGVI 604

Query: 793 YIFSTPAKGTLIEIIFPL 810
            + S   +G+      PL
Sbjct: 605 EVESEVGRGSRFRFALPL 622


>gi|317055666|ref|YP_004104133.1| multi-sensor hybrid histidine kinase [Ruminococcus albus 7]
 gi|315447935|gb|ADU21499.1| multi-sensor hybrid histidine kinase [Ruminococcus albus 7]
          Length = 1205

 Score =  287 bits (734), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 87/365 (23%), Positives = 163/365 (44%), Gaps = 35/365 (9%)

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
           +E+       +++  S+G+  ++ EG +   N    +L+                     
Sbjct: 228 LELTREY---VVDKLSEGLIAVDTEGRVRYFNEPARELY--------------------- 263

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQ 566
             +     E L +  +   +   +    E K       ++    +      + D +E   
Sbjct: 264 PQLADAPEETLDIIGKAIEDDEVIT-MGERKYTPCIEALEYEGENFGRLYRLIDDTEHYN 322

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
              +L     IA+K +  KS FLA +SHEIRTP+ A++G  E+I  +     G  + I Y
Sbjct: 323 YMEQLREQSLIADKANRAKSAFLANMSHEIRTPINAVLGMDEMILRES----GERQIIGY 378

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
           A  I  +G  +L ++ND+LD SK+E G+M L      L  A+++ +++++  A++K +  
Sbjct: 379 AEDIRNAGRTLLSLINDILDFSKVEQGRMELIPTQYELGSAINDLVNMIRPRADKKGLRF 438

Query: 687 RTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRV 741
                + IP  ++ D   VKQ ALN+L+NA+ +T  G  +     +    +    +   V
Sbjct: 439 DVKVDSGIPHMLVGDEIRVKQCALNLLTNAVKYTEKGS-VHFEVGYEKTGDKSIKLRFTV 497

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            DTG+G+    ++K   PF +I   +    EGTGLG+ + + +++    +  I S   KG
Sbjct: 498 SDTGMGIKQENMDKLFSPFSRIEEGKNRSIEGTGLGMSITRQLLELMGSELEINSIYGKG 557

Query: 802 TLIEI 806
           ++   
Sbjct: 558 SVFSF 562


>gi|197106120|ref|YP_002131497.1| FOG: PAS/PAC domain protein [Phenylobacterium zucineum HLK1]
 gi|196479540|gb|ACG79068.1| FOG: PAS/PAC domain protein [Phenylobacterium zucineum HLK1]
          Length = 795

 Score =  287 bits (734), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 89/646 (13%), Positives = 202/646 (31%), Gaps = 44/646 (6%)

Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA 248
               P A  + L++    + +        +       S          +         + 
Sbjct: 3   AATQPPAQDRGLEQLIESISDHAIYMLDPDGRVVTWNSGAQRLKGYAREEIEGQPFARFF 62

Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDF--HTINLNQYTKKQYFGTLQNN----SKESFEY 302
             +D        LL         + +      +  ++  +     ++         +   
Sbjct: 63  SVEDRRAGVPEQLLAEAAEKGKVETEGWRVRKDGGRFWAQGALHAVRAENGALVGFAKIT 122

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPI--PFFVYSHGNLFYANPSFLLLTKYKSVDDI 360
                  +      E E      V+       F +  +G +   N     +  Y + + +
Sbjct: 123 RDMTADRAARDALIESERRFRLMVENVIDYAIFMLDVNGTVANWNAGAQRIKGYTADEVV 182

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
                 S              + +   R++       A    ++ +     A+  I    
Sbjct: 183 G--SHFSRFYTPEDRRAGLPARALETARTEGR---FEAEGWRLRKDGGRFWALVVID-PI 236

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNR 479
            ++    +    I  +    +  +  +     Q   ++    D  + +++  G+I S N 
Sbjct: 237 WDEERRLIGFAKITRDISQRKAAEDALAESERQFRMLVAGVVDYALYMLDPNGVISSWNA 296

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
               + GY  +DI+ + F+ F  +   +        + +   +   E       K+  L 
Sbjct: 297 GAEHIKGYQADDIVGQHFSRFYTEADRAAGVPA-RALQTAGEQGRYEAEGWRVRKDGSLF 355

Query: 540 SLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKES--SHKSDFLARVS 593
              ++I  +       +       D++E +  + +L  A     +             V+
Sbjct: 356 WASVVIDAIRDEDGRLVGFAKITRDVTEKRNAQLELQRAHDQLAQAQKMEALGKLTGGVA 415

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           H+    L  + G +++++N+      +PR +   + I+ S     D+   LL  S+    
Sbjct: 416 HDFNNLLMVVSGQAQMLRNRVG---DDPRALRALDAIETSAKRGEDLTRHLLAFSR---- 468

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713
           +  L   PV+L + V +   L+        + +    ++ +  +  D   ++   LN+  
Sbjct: 469 RQRLQPVPVALADRVEDLKDLIAASLPP-TVRLVIDLSSELWPVKVDPSELELSLLNLAV 527

Query: 714 NAIHFTPSGGQIIISTTHT----------SNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
           NA    P GG + I+  +           + + V + V DTGVG+ +  L +   PF   
Sbjct: 528 NARDAMPGGGVLAITAENVKLTRSAGQTLAGDFVAVTVSDTGVGIPDDILPRIFDPFFTT 587

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
                   +GTGLGL         + G+  + S   +GT      P
Sbjct: 588 K----EVSKGTGLGLSQVYGFAQQSGGEVQVRSELGRGTSFTFYLP 629



 Score =  112 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 39/386 (10%), Positives = 102/386 (26%), Gaps = 26/386 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID---PNNHIGDLLKRQNT 142
            + +D  G +   +    +  G    ++ G        +       P   + +  ++   
Sbjct: 26  IYMLDPDGRVVTWNSGAQRLKGYAREEIEGQPFARFFSVEDRRAGVPEQLLAEAAEKGKV 85

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
              +T  W +           A   + + N    GF    I      D   R      ++
Sbjct: 86  ---ETEGWRVRKDGGRFWAQGALHAVRAENGALVGFAK--ITRDMTADRAARDALIESER 140

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL---RMKNKVSS--LTEYYAHKDDVLKTE 257
           +F  + E    ++    +     +  +           ++V     + +Y  +D      
Sbjct: 141 RFRLMVENVIDYAIFMLDVNGTVANWNAGAQRIKGYTADEVVGSHFSRFYTPEDRRAGLP 200

Query: 258 KYPLLTSEESSLPEQEDFH-TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
              L T+      E E +    +  ++        + +  +    +       S     +
Sbjct: 201 ARALETARTEGRFEAEGWRLRKDGGRFWALVVIDPIWDEERRLIGFAKITRDISQRKAAE 260

Query: 317 EGENLTPETVDKCPIPF------FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
           +    +                  +  +G +   N     +  Y++ D +      S   
Sbjct: 261 DALAESERQFRMLVAGVVDYALYMLDPNGVISSWNAGAEHIKGYQADDIVGQ--HFSRFY 318

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
                 D  A  P    ++        A    ++ +     A   I     ++    +  
Sbjct: 319 TEA---DRAAGVPARALQTAGEQGRYEAEGWRVRKDGSLFWASVVIDAI-RDEDGRLVGF 374

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCS 456
             I  +  + R  + +++    QL  
Sbjct: 375 AKITRDVTEKRNAQLELQRAHDQLAQ 400



 Score = 78.1 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 33/321 (10%), Positives = 81/321 (25%), Gaps = 18/321 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTW-Y 144
            + +D +G +   +    +  G  A +++G                     L+   T   
Sbjct: 154 IFMLDVNGTVANWNAGAQRIKGYTADEVVGSHFSRFYTPED-RRAGLPARALETARTEGR 212

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            +   W +          +   PI+   R   GF    I                 +++F
Sbjct: 213 FEAEGWRLRKDGGRFWALVVIDPIWDEERRLIGFAK--ITRDISQRKAAEDALAESERQF 270

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPP----HLRMKNKVS-SLTEYYAHKDDVLKTEKY 259
             L      ++    +   + S  +         +  + V    + +Y   D        
Sbjct: 271 RMLVAGVVDYALYMLDPNGVISSWNAGAEHIKGYQADDIVGQHFSRFYTEADRAAGVPAR 330

Query: 260 PLLTSEESSLPEQEDFH-TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
            L T+ E    E E +    + + +        +++       +       +        
Sbjct: 331 ALQTAGEQGRYEAEGWRVRKDGSLFWASVVIDAIRDEDGRLVGFAKITRDVTEKRNAQLE 390

Query: 319 ENLTPETVDKCP--------IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
                + + +               +   NL         + + +  DD      L  + 
Sbjct: 391 LQRAHDQLAQAQKMEALGKLTGGVAHDFNNLLMVVSGQAQMLRNRVGDDPRALRALDAIE 450

Query: 371 DAPKLSDNNAIKPVMLYRSDR 391
            + K  ++     +   R  R
Sbjct: 451 TSAKRGEDLTRHLLAFSRRQR 471


>gi|301022435|ref|ZP_07186317.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           MS 69-1]
 gi|300397536|gb|EFJ81074.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           MS 69-1]
          Length = 593

 Score =  287 bits (734), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 82/371 (22%), Positives = 170/371 (45%), Gaps = 28/371 (7%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            + +         I+E  +DG+  I+R+G + + N A   + GY   +++ +P+++    
Sbjct: 239 AQALRETRTLNDLIIENAADGVIAIDRQGDVTTMNPAAEVITGYQRHELVGQPYSMLF-- 296

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMH 559
              +     + + L                ++ + + L +   ++  +        +   
Sbjct: 297 -DNTQFYSPVLDTLEHGTEHV-ALEISFPGRD-RTIELSVTTSRIHNTHGEMIGALVIFS 353

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           D++  K+ + +++ A+++A        + +A V+HE+R PLTAI G+ ++++ Q    + 
Sbjct: 354 DLTARKETQRRMAQAERLAT-----LGELMAGVAHEVRNPLTAIRGYVQILRQQTSDLI- 407

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
              + EY + + +  + +  ++  LL+ S+    +    ++ VSL+  V E + LVQ   
Sbjct: 408 ---HQEYLSVVLKEIDSINKVIQQLLEFSRPRHSQ----WQQVSLNALVEETLVLVQTAG 460

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
            + R+   +   N +  I AD   +KQ+ LNIL NA+    + G+I I T   S+ +  +
Sbjct: 461 VQARVDFISELDNELNPINADRELLKQVLLNILINAVQAISARGKIRIQTWQYSDSQQAI 520

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            + D G G+     +K   PF     S      GTGLGL L++ +++A+ G   + S P 
Sbjct: 521 SIEDNGCGIDLSLQKKIFDPFFTTKAS------GTGLGLALSQRIINAHQGDIRVASLPG 574

Query: 800 KGTLIEIIFPL 810
            G    +I P+
Sbjct: 575 YGATFTLILPI 585



 Score = 40.4 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/117 (10%), Positives = 37/117 (31%), Gaps = 6/117 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G +  ++       G    +++G     +    +    + + D L+          
Sbjct: 263 IDRQGDVTTMNPAAEVITGYQRHELVGQPYSMLF--DNTQFYSPVLDTLEHGTEHVALEI 320

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
            +P     + + +  +   I++ + E  G     I        + +    + ++  +
Sbjct: 321 SFPGRDRTIELSVTTS--RIHNTHGEMIGA--LVIFSDLTARKETQRRMAQAERLAT 373


>gi|299146808|ref|ZP_07039876.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
 gi|298517299|gb|EFI41180.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
          Length = 1007

 Score =  287 bits (734), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 127/741 (17%), Positives = 241/741 (32%), Gaps = 52/741 (7%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRL-CDVSDILHIDPNNHIGDLLKRQNTWY- 144
           W  DA   L   S+      G    K + M L  +            + + +     +  
Sbjct: 151 WEFDAVAKLFY-SDN-EPLNGYDQSKPVSMALYLETLHPDDRSQVTEVMERMSNGEDFSF 208

Query: 145 --GKTTLWPIEGTNLYVPIDLAALPI-YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
                 + P   ++ +    ++  P  +  N++   +   G    N            + 
Sbjct: 209 SFDSRVMLP--DSSTWQFCTISGAPYEFDSNKKVLKY--VGTRKNNTEVQKKEQFFYNIL 264

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
                   IK     VE +   +F  +            ++       + + ++     +
Sbjct: 265 NNLPLSVHIK----DVENDFRYVFCNEESKLMFGTSEDKTTYDVLSEEEVERIQKTDLEV 320

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
             +       +     I  +  +                  L+ R   SL         L
Sbjct: 321 YNTGNPYFGME---RIILKDGRSYDTIVRKSIIEDDGKRFLLNTRWDQSLQNELKRRAQL 377

Query: 322 TPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
              T++      + +       +          K+ +   +   L+  L  P      A 
Sbjct: 378 LTVTMEAMNAFTWFFEPAKNRVSFGEGFDKNGKKASEINSVEKYLT--LVHPDDRQKFAE 435

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
                            R+               +               G+       +
Sbjct: 436 TLQKAVELGSGVWDVEYRIDFKGDGMYQWWETRGLVETTTLNDAPYKYLFGMTQNIDSYK 495

Query: 442 INKRKMEIEVM-------QLCSILEATSDGIAIINREGIILSTNRAVSK----LFGYPVE 490
             +  +            Q    L  T+ G+A I +E ++   N ++         Y   
Sbjct: 496 QTELTLLKNKEIQDALVRQNELALNNTNSGLAYITKEYMVQWENISLCSKSLSFEAYKKG 555

Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
           ++  K            VM      + +  ++ +L+            + +      L  
Sbjct: 556 ELCYKSTYNRTSPCENCVMQRAFVSLQTEQMKFSLD--------SAHTVEVFATPVVLED 607

Query: 551 S--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                  + + D++E ++   +L  AK  AE+    KS FLA +SHEIRTPL AI+GFSE
Sbjct: 608 GSVDGVVIRVDDVTEREKMIKELQEAKHQAEQSDKLKSAFLANMSHEIRTPLNAIVGFSE 667

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
           ++        G     +Y   I+ +  L+L ++ND+LD+SK+E+G + L +EP  L E  
Sbjct: 668 LMAY-----AGEEEKADYIQIINSNNELLLKLINDILDLSKLEAGSVELKYEPFDLSEHF 722

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
               + ++       I++      +  R+  D   V QI  N ++NAI +T  G  I + 
Sbjct: 723 ENMFTSMKQRLKNPDIVLTEINPYHCCRVTLDRNRVAQIITNYVTNAIKYTSKGS-IKMG 781

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                   V   V+DTG+G+ + +  K  + F ++        +GTGLGL + KA+ +A 
Sbjct: 782 YACKDGG-VYFYVKDTGIGIADDKKGKVFQRFEKLD----EFAQGTGLGLSICKAIAEAM 836

Query: 789 MGKFYIFSTPAKGTLIEIIFP 809
            GK    S   +G+L     P
Sbjct: 837 GGKVGFESVHNEGSLFWAFLP 857



 Score = 71.6 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 48/528 (9%), Positives = 123/528 (23%), Gaps = 55/528 (10%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL- 149
           A G L   +E   +  G  +  ++G     ++   +    + + + ++            
Sbjct: 22  ADGTLVRCNESFCRIFGADSQTLLG---NKLNINENSVVPDVVKEAVRGCVPVQMSFLYD 78

Query: 150 WPIEGTNLYV--------PIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
           +  + T+            +     P+Y  + +F  +    I            + ++  
Sbjct: 79  FDKQRTDKRFFSTRTRTCYLKCNGNPLYDNDGKFVNY--IFIFEDITETVKSEEVLRQSR 136

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFS-QQSPPPHLRMKNKV--SSLTEYYAHKDDVLKTEK 258
           +K     +              +F     P         V  +   E     D    TE 
Sbjct: 137 RKTELAMKAANIMFWEFDAVAKLFYSDNEPLNGYDQSKPVSMALYLETLHPDDRSQVTEV 196

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
              +++ E      +    +  +   +             + + L +      +    + 
Sbjct: 197 MERMSNGEDFSFSFDSRVMLPDSSTWQFCTISGAPYEFDSNKKVLKYVGTRKNNTEVQKK 256

Query: 319 ENLTPETVDKCPIPFFVYS---HGNLFYANPSFLLLTKYKSV----DDI--EIAGGLSTL 369
           E      ++  P+   +          + N    L+          D +  E    +   
Sbjct: 257 EQFFYNILNNLPLSVHIKDVENDFRYVFCNEESKLMFGTSEDKTTYDVLSEEEVERIQKT 316

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
                 + N       +   D        R   I+ + +  L  T               
Sbjct: 317 DLEVYNTGNPYFGMERIILKDGRSYDTIVRKSIIEDDGKRFLLNTRWDQSL--------- 367

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
                         + +++     L   +EA +            +S      K      
Sbjct: 368 --------------QNELKRRAQLLTVTMEAMNAFTWFFEPAKNRVSFGEGFDKNGKKAS 413

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS------LRI 543
           E    + +   +  +        L + + L       +  +    +           +  
Sbjct: 414 EINSVEKYLTLVHPDDRQKFAETLQKAVELGSGVWDVEYRIDFKGDGMYQWWETRGLVET 473

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
                           +I  +KQ +  L   K+I +         L  
Sbjct: 474 TTLNDAPYKYLFGMTQNIDSYKQTELTLLKNKEIQDALVRQNELALNN 521



 Score = 65.4 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 50/145 (34%), Gaps = 9/145 (6%)

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
           +E  QL ++  +   GI     +G ++  N +  ++FG   + +L     +      P V
Sbjct: 1   MEHKQLLTVFNSLPVGIGFFTADGTLVRCNESFCRIFGADSQTLLGNKLNINENSVVPDV 60

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTK-----EEKLLSLRIIIKKLPFSSC----YSLTMH 559
           +   +   + + +    +     + K       +   L+     L  +      Y     
Sbjct: 61  VKEAVRGCVPVQMSFLYDFDKQRTDKRFFSTRTRTCYLKCNGNPLYDNDGKFVNYIFIFE 120

Query: 560 DISEWKQEKNKLSHAKKIAEKESSH 584
           DI+E  + +  L  +++  E     
Sbjct: 121 DITETVKSEEVLRQSRRKTELAMKA 145


>gi|90962156|ref|YP_536072.1| two component system histidine kinase [Lactobacillus salivarius
           UCC118]
 gi|90821350|gb|ABD99989.1| Two component system histidine kinase [Lactobacillus salivarius
           UCC118]
          Length = 461

 Score =  287 bits (734), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 79/362 (21%), Positives = 156/362 (43%), Gaps = 26/362 (7%)

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
              +  S+LE    GI +I+ +  +  +N      F +   +   + +  ++       +
Sbjct: 119 RKREYLSLLEYIDIGILVIDYKNRLTMSNELGKDFFDFD-NEWKNQDYQNYIYNLDVRKL 177

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT-MHDISEWKQEK 568
              +        +Q + KI        K++    I   +       +  + D++  K+ +
Sbjct: 178 IEQVKLTKEDKKKQIVLKIDTVQ----KIVETSAIYIPIDSKRYLIMLMLRDLTAQKEME 233

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
            K              + DF+  +SH+I+TP+TAI GFSE + +            ++  
Sbjct: 234 KK--------------QLDFVGNLSHKIKTPITAITGFSETLLDGALD--DKEVSKQFIE 277

Query: 629 YIDRSGNLVLDIVNDLLDISKI-ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
            I      + ++V+D++ IS++ E G  +L+ E V++ + V + + L      +K + +R
Sbjct: 278 IIHDESTKLSNLVDDMITISRLNEHG--SLNIELVNIFKLVKDTLQLFSHEIEKKGLNVR 335

Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747
                 +  +  D   +K I  N++ NAI +    G+I I   +    E +  + DTG+G
Sbjct: 336 IEIDEEL-SLYCDKLKLKHIITNLIQNAIRYNLENGEIKIKVQNDKKNEWVFVISDTGIG 394

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           +++ + E+  + F ++  S      GTGLGL + K  VDA  G+  + S   KGT   +I
Sbjct: 395 ISDKDKERIFERFYRVDKSHSKTVGGTGLGLAVVKESVDALSGRIKVKSQINKGTTFYVI 454

Query: 808 FP 809
            P
Sbjct: 455 LP 456


>gi|256822064|ref|YP_003146027.1| Hpt sensor hybrid histidine kinase [Kangiella koreensis DSM 16069]
 gi|256795603|gb|ACV26259.1| Hpt sensor hybrid histidine kinase [Kangiella koreensis DSM 16069]
          Length = 950

 Score =  287 bits (734), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 83/255 (32%), Positives = 139/255 (54%), Gaps = 11/255 (4%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  A++ A + S  K++FLA +SHEIRTP+  +IGF+E++         N +  ++   
Sbjct: 286 ELDIARRQALEASRIKTEFLANMSHEIRTPMNGVIGFTELLLKTEL----NNKQKDFLFD 341

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I RS   +L I++D+LD SKIE+GKM+    P  L E V +   ++   AN+K I + + 
Sbjct: 342 IKRSATSLLSIIDDILDYSKIEAGKMSFERYPFDLRECVDDIFRMLGPNANKKGIELVSL 401

Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDT 744
             +++P+ +L D   +KQI  N+++NAI FT SG  + +     S  +    + ++V+D+
Sbjct: 402 IYSDVPKALLGDPIRIKQIITNLVNNAIKFTKSGS-VELYAEVESENQKGLKLKVQVKDS 460

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G+T  +     K F Q  +S +    GTGLGL ++K++V+   G   + ST   G+  
Sbjct: 461 GIGLTQEQQRNLFKAFSQADSSTKREFGGTGLGLVISKSLVEKMGGNIGVNSTAGDGSTF 520

Query: 805 EIIFPLYDT-SHPHD 818
                   T S P D
Sbjct: 521 WFTLQCERTDSLPED 535


>gi|86358053|ref|YP_469945.1| two-component sensor histidine kinase protein [Rhizobium etli CFN
           42]
 gi|86282155|gb|ABC91218.1| probable two-component sensor histidine kinase protein [Rhizobium
           etli CFN 42]
          Length = 513

 Score =  287 bits (734), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 102/249 (40%), Positives = 154/249 (61%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I+E +  K+    A++ AE+ +  KS FLA +SHE+RTPL AI+GFSEV+  +  GPL N
Sbjct: 240 IAELEVAKSMSDEARRRAEEANLAKSRFLASMSHELRTPLNAILGFSEVMSAEVMGPLAN 299

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
           P Y EYA  I RSG  +LD++N++LD+S+IE+GK  L  E +SL +   + I +VQL A 
Sbjct: 300 PTYKEYAGDIHRSGQHLLDLINEILDLSRIEAGKYELSEEAISLLDITEDCIGMVQLRAR 359

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
            K I I   F   +P I AD +S++Q+ LN+LSNA+ FTP GG+I +    T+     + 
Sbjct: 360 AKNIAISDQFERQLPAIWADEKSMRQVVLNLLSNAVKFTPQGGEIHVKVGWTAGGGQYIS 419

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           ++D G G+   E+   +  FGQ   + +   +GTGLGLP+ +A++  + G+F + S   +
Sbjct: 420 IKDNGPGIPEEEIPVVLSAFGQGSIAIKSAEQGTGLGLPIVQAILAKHDGQFLLKSKLRE 479

Query: 801 GTLIEIIFP 809
           GT +  I P
Sbjct: 480 GTEVIAILP 488


>gi|54298027|ref|YP_124396.1| sensor histidine kinase [Legionella pneumophila str. Paris]
 gi|53751812|emb|CAH13236.1| sensor histidine kinase [Legionella pneumophila str. Paris]
          Length = 816

 Score =  287 bits (734), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 85/409 (20%), Positives = 158/409 (38%), Gaps = 56/409 (13%)

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV----- 508
             SI ++  D   +++R+  I+  + A  +      + IL K       +N         
Sbjct: 12  FKSIFDSLPDLYLLLDRDFNIVGVSDAYLQATMVNRKQILGKNVFDAFPENPNDPKATGA 71

Query: 509 --MNHYLTEILSLDLRQTLEK----ITLGSTKEEKLLSLRIII------KKLPFSSCYSL 556
             +   L  +L      T+      I   + +                            
Sbjct: 72  KNLYASLHRVLKNKSADTMAIQKYDIQRPADRGGGFEERYWSPINTPVLGAEQEVEYIIH 131

Query: 557 TMHDISEWK---------------------QEKNKLSHAKKIAEKESSH----------- 584
            + D++E+                      + + ++    +  ++ +             
Sbjct: 132 RVEDVTEFVHLKKTGSAQLKLMEELRTKAGEMEIEIYQRAQEIQEANKQLEEANKNLARL 191

Query: 585 ---KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
              K+ F A VSHE+RTPL  I+G  E++  ++  P      +     I  +  ++L  V
Sbjct: 192 DQIKTQFFANVSHELRTPLMLILGSLEMLLAEKRLPSF---VLNTLRRIQNNAQILLKHV 248

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701
           NDLL+ISK+++GKM LH+  + L + + + I+L +    E++ +      + + +   D 
Sbjct: 249 NDLLNISKLDAGKMILHYANIDLVKLIQQTIALFEAQIPERKFVFSMDLPDEL-QAQMDP 307

Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761
             ++ + +NILSNAI FTP   ++ I    T+ E   L++ D G G+     E   + F 
Sbjct: 308 DKIQHVLINILSNAIKFTPQNAKVRIRLAQTNPETCRLQIEDNGSGIPPDLCETIFERFF 367

Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           Q+         GTGLGL +AK  V+ + G     +    G +  I  PL
Sbjct: 368 QVEEPTTRTVGGTGLGLSIAKDFVELHGGSILAGNARNGGAIFTIELPL 416



 Score =  157 bits (397), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 96/232 (41%), Gaps = 12/232 (5%)

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
           +K       F+   SH+++ PL A+      I  +  G + + +  +Y   + +  + + 
Sbjct: 587 KKAEDELDQFVYHASHDLKAPLPAMEHLISWI-EEDLGEMLSEQSKKYLLLLRQRASRMS 645

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
            +++ LL  +  +SG +      +  D  +++ I  +          +     + +P + 
Sbjct: 646 KLLDGLLKYA--QSGYVFDKVRTIHTDRLITDIIKKLNP-----PQTVTFQLEDTLPILN 698

Query: 699 ADLRSVKQIALNILSNAIHFTP-SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757
                ++++   +L N+I       G III T    +      V D G G+     ++  
Sbjct: 699 TCELPLREVFTALLDNSIRHHHRKDGHIIIGTK-EKDRFYEFFVADDGPGIEKKYQDRIF 757

Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           + F  +    ++    +G+GL +AK +V+   GK  + S   KG++   ++P
Sbjct: 758 QLFQTLQPRDKLET--SGVGLSIAKKIVEFQGGKISVESEKNKGSVFRFLWP 807


>gi|268324753|emb|CBH38341.1| putative sensor histidine kinase [uncultured archaeon]
          Length = 653

 Score =  286 bits (733), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 74/400 (18%), Positives = 154/400 (38%), Gaps = 24/400 (6%)

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
                  N +     +    +R    E     +I+    + + ++N +G I+  N+A   
Sbjct: 228 EGLGDSFNEMAQRVKNAIEEERAARGETE---NIMNTMINTLTVVNPDGRIVEANKATFD 284

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           L GY   +++  PF   +           L  ++           T    K+ + + +  
Sbjct: 285 LLGYSEAELIGMPFDKIIGPKNKEGGGIGLENLIKEAEASIENFETTYIAKDGREIPVNF 344

Query: 544 IIKKLPFS----SCYSLTMHDISEWKQEKNK-------LSHAKKIAEKESSHKSDFLARV 592
               +               DI+E K+ +         L    +  +  +    DF+   
Sbjct: 345 SASAMNDEKGKLRGIVCDGGDITERKKMEEDREALIKDLEETNRKLDWSNKELQDFVYIA 404

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SH++R P+  I  F +++++   G L   +   +A  I    N +  +++ LL  S++ +
Sbjct: 405 SHDLREPMRKISAFGQLLQDSLKGKLDEDQQENFAFMI-DGANRMQQMIDALLSYSRVTT 463

Query: 653 GKMNLHFEPVSLDEAVSEAIS-LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
             +    + + L++A+ +  S  + +   E    I       +P + AD   V Q+  N+
Sbjct: 464 --LAKPAKRMDLNKAIEDIKSVELAVLLEETGGTIHV--PEPLPAVQADPSQVHQLLQNL 519

Query: 712 LSNAIHFTPSG--GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
           + N + F       +I + +   ++  V + V D G+G+     EK    F ++ +S   
Sbjct: 520 IGNGLKFHREEIAPEITVRSRRVNDNMVQVEVEDNGIGIEEVNYEKIFGMFQRLHSS--E 577

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
              GTG+GL + K +V+ + G   + S P KG+      P
Sbjct: 578 DYGGTGIGLAVCKKIVERHGGTIGVNSAPGKGSTFWFTMP 617



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 48/124 (38%), Gaps = 7/124 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN---TWYG 145
           ++  G + E ++     +G    ++IGM    +    + +      + L ++        
Sbjct: 269 VNPDGRIVEANKATFDLLGYSEAELIGMPFDKIIGPKNKEGGGIGLENLIKEAEASIENF 328

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFR--GFGIVHVNRVDNDPRALGKRLDKK 203
           +TT    +G    +P++ +A  +     +  G    G  I    +++ D  AL K L++ 
Sbjct: 329 ETTYIAKDGR--EIPVNFSASAMNDEKGKLRGIVCDGGDITERKKMEEDREALIKDLEET 386

Query: 204 FSHL 207
              L
Sbjct: 387 NRKL 390



 Score = 41.9 bits (97), Expect = 0.48,   Method: Composition-based stats.
 Identities = 15/162 (9%), Positives = 41/162 (25%), Gaps = 8/162 (4%)

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTK 353
            +S                A   E EN+    ++   +   V   G +  AN +   L  
Sbjct: 231 GDSFNEMAQRVKNAIEEERAARGETENIMNTMINTLTV---VNPDGRIVEANKATFDLLG 287

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
           Y   + I +      ++              ++  ++ +                  + +
Sbjct: 288 YSEAELIGMP--FDKIIGPKNKEGGGIGLENLIKEAEASIENFETTYIA---KDGREIPV 342

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
            F      ++  +         +  + +  +   E  +  L 
Sbjct: 343 NFSASAMNDEKGKLRGIVCDGGDITERKKMEEDREALIKDLE 384


>gi|323172911|gb|EFZ58542.1| signal transduction histidine-protein kinase barA [Escherichia coli
           LT-68]
          Length = 918

 Score =  286 bits (733), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 85/333 (25%), Positives = 153/333 (45%), Gaps = 17/333 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +FG+ +   +  P    +               L   +   +             +++ +
Sbjct: 193 IFGWRLMRDVTGPIRNMVNTVDR-----IRRGQLDSRVEGFMLGELDMLKNGINSMAMSL 247

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 248 AAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTP 307

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+ +       P       ++ N I+RS N +L I+ND+LD SK+E+GK+ L  
Sbjct: 308 LNGVIGFTRLTLKTELTPT----QRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILES 363

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P  L   + E ++L+   +++K + +  +  +++P  ++ D   ++QI  N++ NAI F
Sbjct: 364 IPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKF 423

Query: 719 TPSGGQ-IIISTTHTSNEEVILRV--RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T +G   I++     SN +V + V  RDTG+G+   +  +  + F Q   S   R  GTG
Sbjct: 424 TENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTG 483

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           LGL + + +V+   G     S P +G+      
Sbjct: 484 LGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516


>gi|282882283|ref|ZP_06290915.1| multi-sensor signal transduction histidine kinase [Peptoniphilus
           lacrimalis 315-B]
 gi|281297877|gb|EFA90341.1| multi-sensor signal transduction histidine kinase [Peptoniphilus
           lacrimalis 315-B]
          Length = 581

 Score =  286 bits (733), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 89/402 (22%), Positives = 166/402 (41%), Gaps = 37/402 (9%)

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
           +  +  ++  +         +++   I K  +E    +L +I    ++G+  ++R   ++
Sbjct: 207 VDVKSNDEIGQLGNMFNYLTDELKNTIAKNDLERS--KLNTIFNYMAEGVIAVDRTNKLI 264

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
             N     L       I  +     +               ++ D+ ++L+   L   K 
Sbjct: 265 HANSIAKNLLSLDDSRINTQINLKKIGLKD-----------INYDIEKSLQGEVLAEIKN 313

Query: 536 EKLLSLRIII--KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
                L+       L  +    + + DI                  +    + +F+A VS
Sbjct: 314 -HFYKLKYAPYKSDLKENEGLIIVLSDI--------------NKEHRLDVLRKEFVANVS 358

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HE++TP+T I  ++E + N   G         +   I+R    +  +V+DLL +S I+  
Sbjct: 359 HELKTPITTIGSYTETLLNGVAG----EDINHFLKVIERENARMARLVSDLLVLSNIDYK 414

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713
           K +L+ E     E + EA+    L  ++K   I       I  I +D     QI +NI+S
Sbjct: 415 KEHLNKESFDCYEFIEEAVESQSLLISQKSHNISIDVPIKIRTIYSDRHGASQILINIIS 474

Query: 714 NAIHFTPSGGQIIISTTHTSNEE---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           NA+ +T  GG+I+I+  +  N +   V + V+D G+G+   +L    + F ++   +   
Sbjct: 475 NALKYTKEGGKILIAAENYKNGKNNFVKISVKDNGIGIPKEDLPMIFERFYRVEKGRSRE 534

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
             GTGLGL +A  M+ +  G   I ST   GT +E+ FP  D
Sbjct: 535 MGGTGLGLSIANEMIKSLGGSIKISSTLNVGTNVELFFPAGD 576


>gi|332706978|ref|ZP_08427038.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
 gi|332354243|gb|EGJ33723.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
          Length = 779

 Score =  286 bits (733), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 81/256 (31%), Positives = 137/256 (53%), Gaps = 10/256 (3%)

Query: 563 EWKQEK--NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           E +  +    L  A + A+  +  KS+FLA +SHE+RTPLT +IG +  +    FG   +
Sbjct: 377 EQRVIERTQALRDALQAAQAANLAKSEFLATMSHELRTPLTCVIGMAATLLRWCFGQDSS 436

Query: 621 -----PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
                 +   Y   I  +G  +L+++ND+LD+S++E+GK+ L     SL +  ++ +S +
Sbjct: 437 QRLPVEKQQRYLKTIQENGQHLLELINDILDLSQVEAGKLVLTISKFSLSKLANQLLSSL 496

Query: 676 QLYANEKRILIRTS--FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
              A ++++ ++             AD R VKQI  N+LSN I FTP GG++I+      
Sbjct: 497 NEQAYQQQVTLQLDWRVPPERDCFSADQRRVKQILFNLLSNGIKFTPEGGKVILRV-WPE 555

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
           N  V+ +V DTG+G+   +L    + F Q+    + + EGTGLGL L K +++ + GK  
Sbjct: 556 NHLVVFQVEDTGIGIAQDQLPLLFQKFQQLETPYRRKYEGTGLGLALTKQLIELHRGKIE 615

Query: 794 IFSTPAKGTLIEIIFP 809
           + S  A+G+   +  P
Sbjct: 616 VESVVAEGSCFTVWLP 631


>gi|323487564|ref|ZP_08092856.1| two-component system sensor histidine kinase [Clostridium symbiosum
           WAL-14163]
 gi|323399121|gb|EGA91527.1| two-component system sensor histidine kinase [Clostridium symbiosum
           WAL-14163]
          Length = 1107

 Score =  286 bits (733), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 110/542 (20%), Positives = 195/542 (35%), Gaps = 63/542 (11%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYSHG---NLFYANPSFLLLTKYKSVDDIEIAGG 365
                  +       +  +  P     ++      L   N        + S  +      
Sbjct: 302 EKAGREVERTAKFLTQLYNTVPCGILQFTTDPNHRLVSVNRMAWEFYGFASEAEYRSEVI 361

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
               +   K  D        L          ++     Q      + +        N   
Sbjct: 362 TPFQMVLGKDMDWVLKTAESLTLW----GDVASYTRESQKKDGKPVWVNVTMGRIVNADG 417

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEV----MQLCSILEATSDGIA--------------- 466
           E +    +  +  + R  + + E +       L + +      I                
Sbjct: 418 EEV-IQAVFTDITEVRRIEIESERQRLIENQSLRAAICTAYPLIMKINLTQDYYECFVEE 476

Query: 467 ----IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522
                I+R G       +  +LF Y  E +    ++ + E  +       + +  +   R
Sbjct: 477 QDSYTIDRSG-------SYDELFRYGAERV----YSAYREDYSSLFSRETIMKKFADGER 525

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPF-SSCYSLTMHDI-------SEWKQEKNKLSHA 574
           +           +E+   +   +  +    +   + +  I       +E  +++  L  A
Sbjct: 526 EIY-LEYRQKGMDEEYHWISSHLIYVDNPVNGDMIAIRMIKVLDAQRAEMAKQEQLLRDA 584

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
              A+  +S KSDFL+R+SH+IRTP+ AIIG S +    +       R  +  + ID S 
Sbjct: 585 LAAAKAANSAKSDFLSRMSHDIRTPMNAIIGMSTI---GKLKMEDPVRVRDCFDKIDTSS 641

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
             +L ++ND+LD+SKIE+GKM L  EP    E ++E  S++   + E+ I       + +
Sbjct: 642 RYLLSLINDILDMSKIETGKMTLTNEPFDFIEMIAELNSIIFPQSLERGIDYEIHHKDPL 701

Query: 695 PRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV------ILRVRDTGVG 747
            R    D   +KQI +N+LSNA+ FT  GG+I   T     + +       + V DTG+G
Sbjct: 702 ERCYIGDSLRLKQILMNLLSNAVKFTAPGGKI--RTEIEEEKRINGFAIFKISVSDTGIG 759

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           MT   LEK  +PF Q          G+GLGL +   +V+   G     S    G+   + 
Sbjct: 760 MTPEFLEKLYQPFEQETLDSARNKIGSGLGLSIVYNLVNLMGGDIKAESRKGHGSRFTVR 819

Query: 808 FP 809
            P
Sbjct: 820 LP 821



 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/214 (11%), Positives = 62/214 (28%), Gaps = 14/214 (6%)

Query: 390 DRTCIAASARLHT---IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
           + + +   A        +                 +   ++        +    ++ +  
Sbjct: 112 EGSGLYMKAHQRATFIYRRENGELRLAHLHHSVSYDDVKDDELFPVRAAKASYEQLQEM- 170

Query: 447 MEIEVMQLCSILEATSDGIAII--NREGIILSTNRAVSKLFGYPVE----DILRKPFTVF 500
           +     Q+  +L     G+ I   +        + ++ +L GY  +    D        F
Sbjct: 171 LGQREQQIELMLSQLPGGMQICKNDELYTTRWISPSLCQLLGYSSQTEYADRTGNCCKNF 230

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL--PFSSCYSLTM 558
           +       +     + L+      L        K   ++ +  + KK+           +
Sbjct: 231 ILPEDFESVRRVTGDELASGESYYL--EYRAIRKNGSIIWVADVGKKVLFQNEEILYSFI 288

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
            DI+E KQ + K+  A +  E+ +   +     V
Sbjct: 289 TDITEKKQNELKIEKAGREVERTAKFLTQLYNTV 322


>gi|306842790|ref|ZP_07475431.1| histidine kinase [Brucella sp. BO2]
 gi|306287063|gb|EFM58571.1| histidine kinase [Brucella sp. BO2]
          Length = 850

 Score =  286 bits (733), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 130/723 (17%), Positives = 259/723 (35%), Gaps = 47/723 (6%)

Query: 110 AFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL--WPIEGTNLYVPIDLAALP 167
              ++G                  G  L+ Q+    +  +     +     + ++     
Sbjct: 141 RADVVGQLPDACGAPQDRPAFLAFGRWLRPQSVTALERAISTLREQARAFDLTVETVNGS 200

Query: 168 IYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ 227
           +   +   SG  GF +    +     +A    L+ +   L +  +    +          
Sbjct: 201 LLDVHGRTSG--GFAVA-CFQSLQGVQAERASLEAQNRELADRIELMRRLLDRIEQPAWL 257

Query: 228 QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287
           +     +   N   +     A+   V+   +          L        +   Q T   
Sbjct: 258 RDGNGRIEWVNLAYAHAVDMANASQVIGEGRELFGAQARQRLERDRFAEPVVQEQLTAVV 317

Query: 288 YFGT-------LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG- 339
           +          +   S             ++            ET+D+      ++    
Sbjct: 318 HGDRRVFDVIDVSAESGSVGLGFDLTEVQAVRDELSRTLKSHAETLDQLSTAVAIFDPEM 377

Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399
            L + N +F+ L     V  +E     + + D  +       +P      D    A  A 
Sbjct: 378 KLQFFNQAFVKLWGL-DVAWLETRPSNTLIFDRLRAEGKLPEQPEWRKWKDSLLSAYRAV 436

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI-- 457
                   E    M  +P  +  +   N    G      +    K ++E     L  +  
Sbjct: 437 --------EPEEHMWHLPDTRTMRVVANPHPQGGVTWFFENMTEKFELEGRYNTLIKVQG 488

Query: 458 --LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLT 514
             L+  ++ +A+   +G +  +N + + L+  P E +      ++  +       +    
Sbjct: 489 ETLDHLAEAVAVFGSDGRLRLSNPSFAALWSLPSEMVREGTHISIIAKLCNQRGGDGLWE 548

Query: 515 EILSLDLRQTLEKITL---GSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571
           + +S       ++          +  +LS  ++           LT  D+++  + +  L
Sbjct: 549 DFVSTVTGFLDQRDGRMGQVELSDGAILSFAVVPLP---KGQTMLTFIDVTDTVRVERAL 605

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
               +  E     K+DF+  VS+E+R+PLT IIGF+E+++   FG L N R +EY ++I 
Sbjct: 606 KEKNEALELADQIKNDFVQHVSYELRSPLTNIIGFTELLQTPAFGSL-NERQLEYLDHIS 664

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
            S +++L IVND+LD++ +++G M L    VS+ EA+S A S V     +  I +    A
Sbjct: 665 TSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEAISAAASRVSERLRDHNIGLDVDIA 724

Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751
           +++    AD   V+Q+  N+LSNA+++ P G  I++        +V+  V D G GM + 
Sbjct: 725 DDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVLQVA-RDGADVVFAVHDDGHGMPSE 783

Query: 752 ELEKAMKPFGQIPN-----SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
            L+   K F   PN        +          + K+ V+ + G+  I +   +GT +  
Sbjct: 784 VLDTVFKRFQSYPNGGRRRGAGLGLA-------IVKSFVELHGGRVEIDTGEERGTTVIC 836

Query: 807 IFP 809
            FP
Sbjct: 837 RFP 839


>gi|260771270|ref|ZP_05880197.1| BarA sensory histidine kinase [Vibrio furnissii CIP 102972]
 gi|260613867|gb|EEX39059.1| BarA sensory histidine kinase [Vibrio furnissii CIP 102972]
          Length = 933

 Score =  286 bits (733), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 89/341 (26%), Positives = 156/341 (45%), Gaps = 19/341 (5%)

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
           F + +   + +P T        ++++      L + +   +        K    +++ + 
Sbjct: 191 FAFRLMHDVTRPITHM-----KNMVDRIRRGHLDVRIEGKMHGELDSLKKGINAMAVSLS 245

Query: 545 IKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
              +           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTPL
Sbjct: 246 EYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPL 305

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
             +IGF+  +   +          +Y   I++S N +L I+ND+LD SK+E+GK+ L   
Sbjct: 306 NGVIGFTRQMLKTQLTN----SQADYLQTIEKSANNLLTIINDILDFSKLEAGKLALENI 361

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFT 719
           P    E + E ++L    A+EK + I       IP  ++ D   ++Q+  N++ N+I FT
Sbjct: 362 PFEFQETLEEVVNLQATSAHEKGLEITLKVDPKIPAGLVGDPLRIQQVLTNLVGNSIKFT 421

Query: 720 PSGGQIIISTTHTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
             G  I IS    S      E+   VRDTG+G++  +  +  + F Q   S   R  GTG
Sbjct: 422 ERG-NIDISVEMRSQRDDVVELQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTG 480

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           LGL + + +V    G+  + S   +G+       L+ T  P
Sbjct: 481 LGLVITQKLVSQMGGEISLTSRLHQGSTFWFTLRLHITEMP 521


>gi|221211939|ref|ZP_03584917.1| histidine kinase [Burkholderia multivorans CGD1]
 gi|221168024|gb|EEE00493.1| histidine kinase [Burkholderia multivorans CGD1]
          Length = 759

 Score =  286 bits (733), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 97/590 (16%), Positives = 198/590 (33%), Gaps = 28/590 (4%)

Query: 231 PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG 290
            P     +      +        +       L S  S++         ++ +        
Sbjct: 6   EPAPSGADHFVQFYDSVEQLLPEVVAFAGEALRSGGSAIVIVRADRLADVVERLGALVAA 65

Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLL 350
             +   +  F   +               +    +V            G   +A    + 
Sbjct: 66  IGEPARRRVFVSDAEALLARFMNGDMPDRDRFQRSVGAIVEAAIA--AGRPVHAFGEMVA 123

Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
           +   +   D       + L      ++        LY          A   T+  +    
Sbjct: 124 VLCARGQPD-------AALRLEALWNELIERHRFSLYCGYPHDAFPGAEQSTLFRHVCAL 176

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS-ILEATSDGIAII- 468
                      N   E      +  +       + +   +  +  + +L      IA++ 
Sbjct: 177 HRRVLPAASLRNDERELHLTLALSQQRSRALGAEIRRREDAERQRNGVLMHAPLPIALLA 236

Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528
             E  I+  N   S + G    DI+ +P    +       +   L +  +  +  T+ + 
Sbjct: 237 GPEHRIVIANHRFSAMCG--RTDIVGRPLAAVMPGADSPAVTRALDDARAHGVSTTIGEH 294

Query: 529 TLGSTKEE-KLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK------- 580
              +T E  ++  L    +         ++  +++E    + KL  A    ++       
Sbjct: 295 RDRATPEGARVYRLHFNPQPQADGIGVIVSAVEVTEHVAAREKLQAANAERDRLLAELRD 354

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            +  K  FLA + HE+R PLT I    E+++++      N         I R  + ++ +
Sbjct: 355 ANHAKDQFLAVLGHELRNPLTPISLALELVRSREGHATPNE-----IAIIQRQLDHMVRL 409

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILAD 700
           ++DLLD+S+I  GK+ L  E V L + V  A+ +      ++R  +      ++ R   D
Sbjct: 410 IDDLLDVSRITRGKIELKKEAVRLGDIVDRAVEVASPLLEQRRHRLHVDIDADV-RCHGD 468

Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760
              + Q+  N+L+NA  +T  GG I +       + +++ VRD+G G+    L+   +PF
Sbjct: 469 PVRLSQVVANLLTNAAKYTAPGGDIGLHVARGDGDTIVIEVRDSGAGIPPDRLDSIFEPF 528

Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFP 809
            ++         G G+GL L K+ V  + G     S  P  G+   +  P
Sbjct: 529 FRLGGEPGRMDGGLGIGLALVKSFVMLHGGTVRADSAGPGLGSTFTVTLP 578



 Score = 47.3 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 33/350 (9%), Positives = 70/350 (20%), Gaps = 28/350 (8%)

Query: 130 NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRV 189
            + +  LL     + G+       G+ + +        +  R        G         
Sbjct: 19  YDSVEQLLPEVVAFAGEAL--RSGGSAIVIVRADRLADVVERLGALVAAIGEP-ARRRVF 75

Query: 190 DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH 249
            +D  AL  R         +  +       E      +        +    +      A 
Sbjct: 76  VSDAEALLARFMNGDMPDRDRFQRSVGAIVEAAIAAGRPVHAFGEMVAVLCARGQPDAAL 135

Query: 250 KDDVLKTEKYPLLTS------EESSLPEQE---DFHTINLNQYTKKQYFGTLQNNSKESF 300
           + + L  E                + P  E    F  +               +  +   
Sbjct: 136 RLEALWNELIERHRFSLYCGYPHDAFPGAEQSTLFRHVCALHRRVLPAASLRNDERELHL 195

Query: 301 EYLSHRNHPSL-----SAYFDEGENLTPETVDK-CPIPFFVYSHGNLFYANPSFLLLTKY 354
                +              D         +    PI         +  AN  F  +   
Sbjct: 196 TLALSQQRSRALGAEIRRREDAERQRNGVLMHAPLPIALLAGPEHRIVIANHRFSAMCGR 255

Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
                     G       P        + +   R+                       + 
Sbjct: 256 TD------IVGRPLAAVMPGADSPAVTRALDDARAHGVSTTIGEHRDRATPEGARVYRLH 309

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
           F P  +A+     +       E  +    + K++    +   +L    D 
Sbjct: 310 FNPQPQADG----IGVIVSAVEVTEHVAAREKLQAANAERDRLLAELRDA 355



 Score = 39.6 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 23/257 (8%), Positives = 65/257 (25%), Gaps = 17/257 (6%)

Query: 82  TVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL---- 137
            +           +   +       G     ++G  L  V        +  +   L    
Sbjct: 229 PLPIALLAGPEHRIVIANHRFSAMCGRT--DIVGRPLAAVMPGAD---SPAVTRALDDAR 283

Query: 138 -KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRAL 196
               +T  G+              +     P                V V         L
Sbjct: 284 AHGVSTTIGEHRDRATPEGARVYRLHFNPQPQADGIGVIVSA-----VEVTEHVAAREKL 338

Query: 197 GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ-QSPPPHLRMKNKVSSLTEYYAHKDDVLK 255
                ++   L E++  + + ++    +  + ++P   + +  ++    E +A  +++  
Sbjct: 339 QAANAERDRLLAELRDANHAKDQFLAVLGHELRNPLTPISLALELVRSREGHATPNEIAI 398

Query: 256 TEKYPL-LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
            ++    +      L +        +    +    G + + + E    L  +    L   
Sbjct: 399 IQRQLDHMVRLIDDLLDVSRITRGKIELKKEAVRLGDIVDRAVEVASPLLEQRRHRLHVD 458

Query: 315 FDEGENLTPETVDKCPI 331
            D       + V    +
Sbjct: 459 IDADVRCHGDPVRLSQV 475


>gi|218437672|ref|YP_002376001.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
 gi|218170400|gb|ACK69133.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
          Length = 1021

 Score =  286 bits (733), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 91/588 (15%), Positives = 198/588 (33%), Gaps = 48/588 (8%)

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
                + + K      L   +  L  +    T  L    +       Q  + +      +
Sbjct: 324 EQLQTELIEKRRVEEALRQAQDLLERRVLQRTAELANANQDLQTTLAQLQTAQQQLSQQN 383

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAG 364
               +     D       +   + P  + V    G +  AN +  +L +      +  + 
Sbjct: 384 EALINARKMADAERRRYQDLFSEAPDGYIVTDVSGKIEEANRAASVLLRLSQDQLVGQSL 443

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
                     + + +           +   +    L        +            N  
Sbjct: 444 W-------QYIDEGDRPLFQTRLAQLQPVQSWEVYLKP---PFASPFPAVIAVTIIDNSL 493

Query: 425 PENMPQNGIEPEDVDTRINKRK---MEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
            + +    +  +  D +  + +    E ++ Q  ++++ ++D I + + +  IL  +   
Sbjct: 494 GQAIGLRWLLRDITDAKRREAERKRAEEKIQQQAALIDISTDAIFVCDLDNKILFWSEGA 553

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
           S+L+G+   + L K        ++ S +   L  ++S +     E   L    ++ ++  
Sbjct: 554 SRLYGWAAGETLGKKAYKLFYNSSLSQVEPSLNLMISKNSWHG-ELEQLTKENKKIIVQS 612

Query: 542 RIIIKKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
           R  + +          +   DI+E K  + +   A+++            + ++H++   
Sbjct: 613 RWTLVRDQTGQPESILIVNTDITEKKHLEVQFYRAQRL-----ESIGTLASGIAHDLNNI 667

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  I+ F   +  Q+F P  + +  E    ++ S      +V  +L  +  E G      
Sbjct: 668 LQPIL-FIAHLLRQKF-PHLDEQTRERLALLEDSSKRGTSLVRQILSFACGEEG----SR 721

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHF 718
             V +   + E I + Q     K I I+      ++  + AD   + Q+ +N++ NA   
Sbjct: 722 VNVQVKHILREVIQVAQKTFP-KSIKIQMKRPTLDLWTVYADATQLHQVFMNLMVNARDA 780

Query: 719 TPSGGQIIISTT--------------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764
            P GG + IS                      +++   DTG G+    +E+   PF    
Sbjct: 781 MPEGGMLTISIENLFIDETYARMEIEAHEGYYILITFADTGTGIPTDIIERIFDPFFTTK 840

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
                 G+GTGLGL   + +V  + G   + S   KG+  +I  P  D
Sbjct: 841 EP----GKGTGLGLSTVRGIVKNHEGFVRVSSVVGKGSQFKIYLPAID 884



 Score = 80.8 bits (198), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 26/260 (10%), Positives = 79/260 (30%), Gaps = 9/260 (3%)

Query: 329 CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388
            PI    +  G L   + +     +   +D ++       +              ++  R
Sbjct: 275 VPILQGEHLWGLLIAHHCASPRQWQAHEIDLLQQLAIQVGIAIQQSTFYEQLQTELIEKR 334

Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
                +  +  L   +  +  +         +         Q  +  ++      ++  +
Sbjct: 335 RVEEALRQAQDLLERRVLQRTAELANANQDLQTTLAQLQTAQQQLSQQNEALINARKMAD 394

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
            E  +   +     DG  + +  G I   NRA S L     + ++ +    ++++    +
Sbjct: 395 AERRRYQDLFSEAPDGYIVTDVSGKIEEANRAASVLLRLSQDQLVGQSLWQYIDEGDRPL 454

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLS----LRIIIKKLPFSSCYSLTMHDISEW 564
               L ++     +                      + II   L  +      + DI++ 
Sbjct: 455 FQTRLAQL-----QPVQSWEVYLKPPFASPFPAVIAVTIIDNSLGQAIGLRWLLRDITDA 509

Query: 565 KQEKNKLSHAKKIAEKESSH 584
           K+ + +   A++  +++++ 
Sbjct: 510 KRREAERKRAEEKIQQQAAL 529



 Score = 38.5 bits (88), Expect = 5.1,   Method: Composition-based stats.
 Identities = 26/268 (9%), Positives = 70/268 (26%), Gaps = 11/268 (4%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D    +   SE   +  G  A + +G +   +     +       +L+  +N+W+G+   
Sbjct: 541 DLDNKILFWSEGASRLYGWAAGETLGKKAYKLFYNSSLSQVEPSLNLMISKNSWHGELEQ 600

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
              E     + +      +  +  +        +               R  +  S    
Sbjct: 601 LTKEN--KKIIVQSRWTLVRDQTGQPE--SILIVNTDITEKKHLEVQFYRAQRLESIGTL 656

Query: 210 IKKGHSSVEK------EKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
                  +            +  Q+ P    + + +++ L +    +   L  +      
Sbjct: 657 ASGIAHDLNNILQPILFIAHLLRQKFPHLDEQTRERLALLEDSS-KRGTSLVRQILSFAC 715

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
            EE S    +  H +       ++ F        +         +   +       NL  
Sbjct: 716 GEEGSRVNVQVKHILREVIQVAQKTFPKSIKIQMKRPTLDLWTVYADATQLHQVFMNLMV 775

Query: 324 ETVDKCPIPFFVYSHGNLFYANPSFLLL 351
              D  P    +       + + ++  +
Sbjct: 776 NARDAMPEGGMLTISIENLFIDETYARM 803



 Score = 37.7 bits (86), Expect = 9.2,   Method: Composition-based stats.
 Identities = 28/182 (15%), Positives = 52/182 (28%), Gaps = 14/182 (7%)

Query: 53  NFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFK 112
           N    N   +++      ++ F   P    V      D  G ++E +      +     +
Sbjct: 383 NEALINARKMADAERRRYQDLFSEAPDGYIV-----TDVSGKIEEANRAASVLLRLSQDQ 437

Query: 113 MIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172
           ++G  L    D             L+   +W  +  L P   +    P  +A   I +  
Sbjct: 438 LVGQSLWQYIDEGDRPLFQTRLAQLQPVQSW--EVYLKPPFASPF--PAVIAVTIIDNSL 493

Query: 173 REFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS---HLHEIKKGHSSVEKEKYDIFSQQS 229
            +  G R   ++          A  KR ++K      L +I      V      I     
Sbjct: 494 GQAIGLRW--LLRDITDAKRREAERKRAEEKIQQQAALIDISTDAIFVCDLDNKILFWSE 551

Query: 230 PP 231
             
Sbjct: 552 GA 553


>gi|46202457|ref|ZP_00053186.2| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 669

 Score =  286 bits (733), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 88/587 (14%), Positives = 197/587 (33%), Gaps = 31/587 (5%)

Query: 233 HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL 292
             R K++++        + D          T         E + + +             
Sbjct: 96  LARTKSRITGKPFLLFVEKDSRHDLDAHFATVRSVGRASSELWLSPDQRPPFPVILESVR 155

Query: 293 QNNS-----KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNL-FYANP 346
                    +     L   +         E E       ++ P+   +    ++   +N 
Sbjct: 156 LGEGWGDGWRCLSTALDITSRKQAEIALQESETRFRAIFEQSPLAIQIVDAASVPRMSNR 215

Query: 347 SFLLLTK--YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
           S++ L      +         L  +     LS+  A             +   A   T+ 
Sbjct: 216 SWVKLWGQTVTAPTAEGGHPVLDRIGAERLLSEGLA----------GRSLEIPAIHVTVD 265

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
             R     +    +    +         +  +  + + ++R+++I    + ++L A+ D 
Sbjct: 266 TGRGEERWVHGYAYPIRGRNDSVPEVVLVHEDITEQKRSERELQISQSLINALLNASIDA 325

Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
           I +   +G IL+ N  +++ F   VE +L       L  +           +L   +   
Sbjct: 326 IMLFKIDGAILAANTVMAERFCTTVECLLGDCVWTLLPPDLAESRRQACLGVLESGIPAH 385

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM-HDISEWKQEKNKLSHAKKIAEKESS 583
           +         +  +  +     ++            DIS+ K+ + K++      E+ +S
Sbjct: 386 VLDHQGELFLDNFIFPVTGPDGRIDK----LAVFSRDISDQKRAEAKITSYVAEIERSNS 441

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
               F    SH++R PL  +  +   +  +R+G L +    ++  Y       +  +V  
Sbjct: 442 ELEQFAYVASHDLREPLRMVSSYL-SLLERRYGALLDQDGHDFIGYARDGAKRMDQLVLG 500

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703
           LL+ S+I      +   PV    A+  A++ + +  +E    I    +     I+ D   
Sbjct: 501 LLEFSRITRHGDPITAMPV--LPAIQLALTNLGMGVSECGAAIHIDESLLSCGIMGDPVQ 558

Query: 704 VKQIALNILSNAIHF--TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761
           + ++  N++ NA+ +  +     I I             + D G+G+     E+    F 
Sbjct: 559 IMRLFQNLIGNALKYRKSEVAPAISIGGRLRDGGW-EFSISDNGIGIATEYFERIFGIFQ 617

Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           ++    + + EGTG+GL + K +V+ + G  ++ S P  GT      
Sbjct: 618 RLH--TRDQYEGTGIGLAICKKIVERHGGSIWLESQPDMGTTFFFTL 662



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/161 (14%), Positives = 57/161 (35%), Gaps = 7/161 (4%)

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
           + Q  +  ++   R  +  +E    +   + E +  G  II+ +  ++  N A   +   
Sbjct: 39  VHQEELRTQNEQLRQAQDNIEKVSHRYQDLFEYSPAGYFIIDDKLTVIDANIAGMGMLAR 98

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
               I  KPF +F+E+++   ++ +   + S+    +       S  +     + +   +
Sbjct: 99  TKSRITGKPFLLFVEKDSRHDLDAHFATVRSVGRASS---ELWLSPDQRPPFPVILESVR 155

Query: 548 LPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
           L            T  DI+  KQ +  L  ++         
Sbjct: 156 LGEGWGDGWRCLSTALDITSRKQAEIALQESETRFRAIFEQ 196


>gi|323487478|ref|ZP_08092772.1| hypothetical protein HMPREF9474_04523 [Clostridium symbiosum
           WAL-14163]
 gi|323399160|gb|EGA91564.1| hypothetical protein HMPREF9474_04523 [Clostridium symbiosum
           WAL-14163]
          Length = 801

 Score =  286 bits (733), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 100/478 (20%), Positives = 194/478 (40%), Gaps = 39/478 (8%)

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
              D     D+ A++ +     +R  +  SA +     + E       I     ++   +
Sbjct: 175 HPHDRQVFYDSFALENIRNRARERQQM-ISAEVRRKDRSGEYRYC-ELIGIFYKDREGIS 232

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQL-CSILEA---TSDGIAIIN--REGIILSTNRAV 481
                   +  +    + +      +   ++ E+     +G    +  R+     +    
Sbjct: 233 EKMMLTYRDTDELAKARIRERQANRRFVRAVNESYDEIYEGELYTDYLRQWKGEKSTPYF 292

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL------TEILSLDLRQTLEKITLGSTKE 535
              F     + ++      +      V    L       +  +     T+    L  +  
Sbjct: 293 R--FSPSFSEQIKWAADTIVHPEEKEVFLSRLSPDRLKEDFENGKSEVTISYRRLTPSGS 350

Query: 536 EKLLSLRIIIKKLPFS-SCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLA 590
            +  SL + + ++        L + DI + K+E+     +L +A  +AEK +  K+DFL+
Sbjct: 351 YRWHSLYVRLSEMTTDCIRVMLYLKDIDDVKKEEERKQRELQNALAMAEKANEAKTDFLS 410

Query: 591 RVSHEIRTPLTAIIGFSEV----IKNQRFGPLGNP---------RYIEYANYIDRSGNLV 637
           R+SH+IRTP+  I+G + V    ++++  G              + +     I+ S   +
Sbjct: 411 RMSHDIRTPMNVIVGMASVARFVLQSEVKGTANLQCDEKTGNYAKLLNCLEKIEMSSAFL 470

Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697
           L ++ND+LD+SKIESGKM +    ++L + +     +++  A E+R     S A  +   
Sbjct: 471 LSLINDILDMSKIESGKMKIANREMNLKDTIRNIKVMIEAQAEERRQTFLVSVAPEVGEF 530

Query: 698 L-ADLRSVKQIALNILSNAIHFTPSGGQII--ISTTHTSNEE--VILRVRDTGVGMTNYE 752
              D   + QI LN+L NA+ +TP  G+I   ++       E  +   + DTG+GM+   
Sbjct: 531 YYCDSLRLNQILLNLLGNALKYTPEQGEIRLCVTAGKVEAGEQLIWFIISDTGIGMSEEF 590

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           + +   PF Q         EGTGLGL +++ +V+   G     S P KGT+  +  P+
Sbjct: 591 MARMFDPFEQQDFGGSRIFEGTGLGLSISRKLVELLNGTISAESEPGKGTVFTVKIPM 648


>gi|126175349|ref|YP_001051498.1| hybrid sensory histidine kinase BarA [Shewanella baltica OS155]
 gi|125998554|gb|ABN62629.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS155]
          Length = 932

 Score =  286 bits (733), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 91/245 (37%), Positives = 133/245 (54%), Gaps = 8/245 (3%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  AKK A + S  KS+FLA +SHE+RTPL  +IGF+  +         +   ++Y   
Sbjct: 283 ELDLAKKRALEASRIKSEFLANMSHELRTPLNGVIGFARQLVKTPL----HSSQVDYIKT 338

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I+RS   +L I+ND+LD SK+E+GKM L   P  L E + + I+L+   A  K + +   
Sbjct: 339 IERSATNLLGIINDILDFSKLEAGKMVLENMPFGLRETIGDTITLISGSAQAKGLELVVD 398

Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVILR--VRDTG 745
            A N+P  +  D   V QI  N++ NAI FT SG   + I     S E+V+LR  V DTG
Sbjct: 399 IAPNVPDNVNGDAMRVCQIINNLVGNAIKFTDSGSVMVKIELQSQSEEQVVLRCDVVDTG 458

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+   + +   + FGQ  +S   R  GTGLGL + K +V+   G+    S+P KG+   
Sbjct: 459 IGIDESQQDFLFQAFGQADSSISRRFGGTGLGLVITKRLVNQMGGQIGFTSSPEKGSNFW 518

Query: 806 IIFPL 810
              PL
Sbjct: 519 FSLPL 523


>gi|161520791|ref|YP_001584218.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans ATCC
           17616]
 gi|189353027|ref|YP_001948654.1| signal transduction histidine kinase [Burkholderia multivorans ATCC
           17616]
 gi|160344841|gb|ABX17926.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans ATCC
           17616]
 gi|189337049|dbj|BAG46118.1| signal transduction histidine kinase [Burkholderia multivorans ATCC
           17616]
          Length = 654

 Score =  286 bits (733), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 103/493 (20%), Positives = 175/493 (35%), Gaps = 23/493 (4%)

Query: 329 CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388
             +               +            +  A  L++L      +  + +    L+ 
Sbjct: 17  LAVGVACALQAGAIRVVGAHAPFAPLPFYAGVAAAAWLTSLAGGLAATAASTVVIAALWW 76

Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
            D       A   T         A+         +       +    +            
Sbjct: 77  RDAPTATWLADAGTFVAIGVIECALIAAVRPLFART----RADDDANDARREPAAAPPPP 132

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
            E + L  +++A+ D I  ++    I+S NRA  ++FG     ++ +  T          
Sbjct: 133 SEDVLLRRVVDASPDAIVGVDGARRIVSWNRAAQRIFGADAATMIGRDVTTLFAPRWLR- 191

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS-----------LT 557
               +   +            L   ++            +  ++ +              
Sbjct: 192 -RQPVPASIDEVHAPLGPIDVLCMRQDAHCFRATFAASPIVDANGHVDGLSMTLREARER 250

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
             D     +       A+  A+  +  K + LA VSHE+RTPL  I G+ EV+++     
Sbjct: 251 RRDERRDHRSLRGARDARAQADTSNRLKDELLATVSHELRTPLNVIYGWVEVLRS----V 306

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
            G     +  + IDRS   +  +V DLLD S + +GK+ L   PV +   V +A      
Sbjct: 307 DGQGFAQQAVDAIDRSARSLARMVGDLLDASSLATGKLRLERTPVDVARVVHDAAREFGA 366

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737
            A+ K I + T  A     I AD   + Q+  N+LSNAI FTPSGG+I++S        V
Sbjct: 367 PAHAKGITLVTEGAGTACVISADAERLHQVLSNLLSNAIKFTPSGGRIVVSLARVD-AHV 425

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
            L V DTG GM    L     PF +  N+      G GLGL + + + + + G     S 
Sbjct: 426 RLSVADTGQGMAPEALPNLFDPFNRPANAPASPQRGLGLGLSIVRNIAELHGGSVEAASE 485

Query: 798 -PAKGTLIEIIFP 809
            P +G  + ++ P
Sbjct: 486 GPGRGLTVTVMLP 498



 Score = 45.8 bits (107), Expect = 0.033,   Method: Composition-based stats.
 Identities = 42/408 (10%), Positives = 86/408 (21%), Gaps = 35/408 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D    +   +    +  G  A  MIG  +  +     +        + +      G   
Sbjct: 152 VDGARRIVSWNRAAQRIFGADAATMIGRDVTTLFAPRWLRRQPVPASIDEVHAPL-GPID 210

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGF------------RGFGIVHVNRVDNDPRAL 196
           +  +           AA PI   N    G                      R   D RA 
Sbjct: 211 VLCMRQDAHCFRATFAASPIVDANGHVDGLSMTLREARERRRDERRDHRSLRGARDARAQ 270

Query: 197 GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256
               ++    L                I+        +  +       +        L  
Sbjct: 271 ADTSNRLKDELLATVSHELRT--PLNVIYGWVEVLRSVDGQGFAQQAVDAIDRSARSLAR 328

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
               LL +   +  +     T                  +      L      +      
Sbjct: 329 MVGDLLDASSLATGKLRLERTPVDVARVVHDAAREFGAPAHAKGITLVTEGAGTACVISA 388

Query: 317 EGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVD-----DIEIAGGLSTLL 370
           + E L     +       F  S G +  +        +    D       E    L    
Sbjct: 389 DAERLHQVLSNLLSNAIKFTPSGGRIVVSLARVDAHVRLSVADTGQGMAPEALPNLFDPF 448

Query: 371 DAPKLSDNNAIKPVML--------------YRSDRTCIAASARLHTIQWNRENSLAMTFI 416
           + P  +  +  + + L                   +         T+         M  +
Sbjct: 449 NRPANAPASPQRGLGLGLSIVRNIAELHGGSVEAASEGPGRGLTVTVMLPAGWDADMAVV 508

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
           P   A+  P    ++       D   ++  +   +  L + +     G
Sbjct: 509 PLGTADGVPAAALEHQRVLVVDDEPTSRASLSAALQTLGAQVSTAHSG 556


>gi|159898358|ref|YP_001544605.1| integral membrane sensor hybrid histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159891397|gb|ABX04477.1| integral membrane sensor hybrid histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 569

 Score =  286 bits (733), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 86/241 (35%), Positives = 137/241 (56%), Gaps = 5/241 (2%)

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
            +   A+++AE+ +  KS FLA +SHE+RTPL AII  +E I    FGPL N +   Y +
Sbjct: 193 QEAKSAQRLAEQANLRKSQFLATMSHELRTPLNAIINMTEFI--DWFGPL-NSQQKSYQD 249

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            +  +G  +L ++ND+LD+SKIE+G++ L F  V   +   E +  V+  A  K + I  
Sbjct: 250 QVRGAGEHLLHLINDILDLSKIEAGRIELQFGQVDCGDIAQEVLETVRPLAESKGLQIAY 309

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748
             A+      AD +++KQI LN+LSNAI FT +G QI ++   ++   V + V DTG+G+
Sbjct: 310 HHADGTGLAWADSKAIKQIVLNLLSNAIKFTETG-QIRVALEFSAT-TVNISVHDTGIGI 367

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
              + +   + F QI ++     EGTGLG+ + K +VD + G   + S   +GT  ++  
Sbjct: 368 AREQQQFIWESFRQIQSADDREYEGTGLGMSITKQLVDLHGGNITVESELGQGTQFQVCL 427

Query: 809 P 809
           P
Sbjct: 428 P 428


>gi|90408287|ref|ZP_01216452.1| putative sensor histidine kinase/response regulator [Psychromonas
           sp. CNPT3]
 gi|90310588|gb|EAS38708.1| putative sensor histidine kinase/response regulator [Psychromonas
           sp. CNPT3]
          Length = 919

 Score =  286 bits (733), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 72/242 (29%), Positives = 130/242 (53%), Gaps = 10/242 (4%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L   +K A++ +  KS+FLA +SHE+RTPL  +IGF+  +   +         ++Y   
Sbjct: 276 ELDLIRKKAQQAAKVKSEFLANMSHELRTPLNGVIGFARQLLKTKMTS----SQVDYLET 331

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I+RS   +L I+ND+LD SKIE+GK+ L   P  L + + E + L+   A+EK + +   
Sbjct: 332 IERSAANLLHIINDILDFSKIEAGKLMLEHIPFDLRDCIDETMYLLAPSAHEKGLELSVL 391

Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDT 744
              N+ + +L D   ++QI  N++ NAI FT  G  I +     ++++    + + + DT
Sbjct: 392 IDANVTQSVLGDAMRLQQILTNLIGNAIKFTQQG-DIEVKIQQVADKKGLITLKISISDT 450

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G++  +  +    FGQ  +S   +  GTGLGL + + ++    G+ + +S   +G+  
Sbjct: 451 GIGISKQQQAQLFCAFGQADSSITRQYGGTGLGLVITQKLIQKMQGEIHFYSVEDQGSTF 510

Query: 805 EI 806
             
Sbjct: 511 WF 512


>gi|333001143|gb|EGK20713.1| signal transduction histidine-protein kinase barA [Shigella
           flexneri K-272]
 gi|333015782|gb|EGK35119.1| signal transduction histidine-protein kinase barA [Shigella
           flexneri K-227]
          Length = 918

 Score =  286 bits (733), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 85/333 (25%), Positives = 154/333 (46%), Gaps = 17/333 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +FG+ +   +  P    +               L   +   +             +++ +
Sbjct: 193 IFGWRLMRDVTGPIRNMVNTVDR-----IRRGQLDSRVEGFMLGELDMLKNGINSMAMSL 247

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
           +               D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 248 VAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTP 307

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+ +       P       ++ N I+RS N +L I+ND+LD SK+E+GK+ L  
Sbjct: 308 LNGVIGFTRLTLKTELTPT----QRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILES 363

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P  L   + E ++L+   +++K + +  +  +++P  ++ D   ++QI  N++ NAI F
Sbjct: 364 IPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKF 423

Query: 719 TPSGGQ-IIISTTHTSNEEVILRV--RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T +G   I++     SN +V + V  RDTG+G+   +  +  + F Q   S   R  GTG
Sbjct: 424 TENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTG 483

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           LGL + + +V+   G     S P +G+      
Sbjct: 484 LGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516


>gi|325958690|ref|YP_004290156.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanobacterium sp. AL-21]
 gi|325330122|gb|ADZ09184.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanobacterium sp. AL-21]
          Length = 513

 Score =  286 bits (733), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 87/513 (16%), Positives = 186/513 (36%), Gaps = 71/513 (13%)

Query: 338 HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP--------VMLYRS 389
            G++  ANP+ +    Y   + ++++     +LD   + +                   +
Sbjct: 30  TGHIIDANPAAVDFYGYNREELVQMSIHEINILDPDIIDEQMMQAENKNKNHFIFQHRLA 89

Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449
           D            I ++ E  L                     I  +  D      K+  
Sbjct: 90  DGRICDVDVYSGMIDYHGEELLY-------------------SIVHDRTDQNRALVKLRD 130

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
                  I E +  G  I+  +   L+ N A+  + GY  E++L + FT     +   + 
Sbjct: 131 SEELFRLIFEQSPLGACIMALDYTTLTINNALCNMLGYSKEELLSRRFTEDTHPDDLDMD 190

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWK 565
                ++++  +             + +LL   + +  +   +       + + DI+  K
Sbjct: 191 MELRKQLVA-GMIDDYTLEKRYIRIDGELLWANVNVSAIKDQNNRLVKILVMVEDITRQK 249

Query: 566 QEKN----------------------------KLSHAKKIAEKESSHKSDFLARVSHEIR 597
           Q +                             +L    K  +  +     F    SH+++
Sbjct: 250 QMEKLFLKRTDKLDSIRQILDLKIEDNEEVEYRLKQLIKDLKMSNQELERFAYVSSHDLK 309

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
            PL  II F +++K++ +  L      ++ ++       +  ++NDLL  S++ + +   
Sbjct: 310 EPLRMIISFLQLLKSRYYNRLDQD-ANDFIDFAVEGAQRMDMMINDLLQFSRVGNER--- 365

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
            F+ +  +  V   IS +          +      ++P+I A+   + Q+  N++ NAI 
Sbjct: 366 EFKYLDCEIVVKNTISHLSPLIENNDAKV---VHGSLPKIHANEELMTQLFQNLIGNAIK 422

Query: 718 FTPS-GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
           +      +I I  +    + + + VRD G+G+    L++    F ++ +  +   EGTG+
Sbjct: 423 YRRDVAPKITIDYSEEEEDYLFI-VRDNGIGIEAQHLDRIFTVFQRLHS--REEYEGTGI 479

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GL ++K +V  + GK +  S P KGT      P
Sbjct: 480 GLAISKKIVQQHNGKIWAKSEPGKGTTFYFTIP 512



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/117 (13%), Positives = 41/117 (35%), Gaps = 6/117 (5%)

Query: 98  ISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ--NTWYGKTTLWPIEGT 155
           I+  L   +G    +++  R  + +    +D +  +   L     + +  +     I+G 
Sbjct: 158 INNALCNMLGYSKEELLSRRFTEDTHPDDLDMDMELRKQLVAGMIDDYTLEKRYIRIDGE 217

Query: 156 NLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212
            L+  ++++A  I  +N      +   +V           L  +   K   + +I  
Sbjct: 218 LLWANVNVSA--IKDQNNRLV--KILVMVEDITRQKQMEKLFLKRTDKLDSIRQILD 270



 Score = 45.4 bits (106), Expect = 0.042,   Method: Composition-based stats.
 Identities = 29/290 (10%), Positives = 85/290 (29%), Gaps = 18/290 (6%)

Query: 93  GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPI 152
           G++ + +       G    +++ M + +++    +DP+     +++ +N           
Sbjct: 31  GHIIDANPAAVDFYGYNREELVQMSIHEINI---LDPDIIDEQMMQAENKNKNHFIFQHR 87

Query: 153 --EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
             +G    V +    +  +           + IVH     N      +  ++ F  + E 
Sbjct: 88  LADGRICDVDVYSGMIDYHGEE------LLYSIVHDRTDQNRALVKLRDSEELFRLIFEQ 141

Query: 211 KKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLKTEKYP--LLTSE 265
               + +    Y   +  +          +  +S       H DD+    +    L+   
Sbjct: 142 SPLGACIMALDYTTLTINNALCNMLGYSKEELLSRRFTEDTHPDDLDMDMELRKQLVAGM 201

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
                 ++ +  I+            +++ +    + L      +     ++      + 
Sbjct: 202 IDDYTLEKRYIRIDGELLWANVNVSAIKDQNNRLVKILVMVEDITRQKQMEKLFLKRTDK 261

Query: 326 VDKCP--IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
           +D     +   +  +  + Y     +   K  + +    A   S  L  P
Sbjct: 262 LDSIRQILDLKIEDNEEVEYRLKQLIKDLKMSNQELERFAYVSSHDLKEP 311


>gi|219848679|ref|YP_002463112.1| GAF sensor signal transduction histidine kinase [Chloroflexus
           aggregans DSM 9485]
 gi|219542938|gb|ACL24676.1| GAF sensor signal transduction histidine kinase [Chloroflexus
           aggregans DSM 9485]
          Length = 710

 Score =  286 bits (733), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 87/603 (14%), Positives = 210/603 (34%), Gaps = 46/603 (7%)

Query: 227 QQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKK 286
                P + +  +V            +L    +      +++   +     +   Q  + 
Sbjct: 123 PSVTAPLVAVSPEVLFSFGSILLSGLMLIAVLFLGNRRNQAAREWRTRHDQLRREQKQQV 182

Query: 287 QYFGTLQ-NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNL---F 342
                   +         +        +     +++  + +D       V    +     
Sbjct: 183 ANLEASNNDLRDRLRRMEALGESLRAISSSLSLDDVLRQILDSLSYMVGVQRIDDAALSL 242

Query: 343 YANPSFLLLTKYKS------VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA 396
               +    + Y         D +  A   +    +    +           +     A 
Sbjct: 243 IHGDALEHRSLYADRHTTDWADSLARAVIANRYTVSIDAHEIGQRPEWATLATHEFRSAL 302

Query: 397 SARLHTIQWNRENSLAMTFIPFEK----ANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
           S  L           A++ +  ++     ++    +  +      +       ++  +  
Sbjct: 303 SVPLFDPDHPNCVRGALSIVSRQEGAFSPSEERHLISFSIQAMIAIRNAELHVQLSKQRA 362

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
            L +IL   +DG+ + +  G +   N    ++  Y  E           +    + +  +
Sbjct: 363 MLSAILNDMADGLIVYDDHGKVYLDNAVARRVLQYSAEH----------QGVLHTRLAAF 412

Query: 513 LTEILSLDLRQTLEKITLGSTK-EEKLLSLRIIIK-KLPFSSCYSLTMHDISEWKQEKNK 570
              +       + E         + +   ++  +    P +    + +HDI++ K  +  
Sbjct: 413 AARLFQRGESLSEEVEVKDVDGAQARYYRIQGTLVNPSPETCLAVVVLHDITDQKLRE-- 470

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG-NPRYIEYANY 629
                         + DF+A+VSHE+R PL  + GF +++ N+       N R  E    
Sbjct: 471 ------------QQRRDFMAKVSHELRNPLHTLQGFLKLLINESNKVGNLNERQTEALQE 518

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           ++ S N +   + DL++++++E G+  ++    +  + +    S  +  A E  + +   
Sbjct: 519 VENSVNTLKKRIVDLIELNRLERGQFTINPVRTNPIDIIVTTCSQQRSKALESEVELIID 578

Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749
             + +P+++ D   ++Q+  N++ NA+  TP GG+I++S     + ++++ V DTG G+ 
Sbjct: 579 IPDQLPQVIVDEDRIRQVLTNLIENAMKATPRGGKIVVSAEQQQD-QILIHVTDTGKGIA 637

Query: 750 NYELEKAMKPFG-QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI-FSTPAKGTLIEII 807
           +   EK   PF  +            G+GL + + +V+A+ GK ++  S   KGT     
Sbjct: 638 SELWEKIFDPFYSRGNGMLAGEN--MGVGLTICRQLVEAHGGKIWVAHSEVGKGTRFSFS 695

Query: 808 FPL 810
            PL
Sbjct: 696 LPL 698


>gi|15643616|ref|NP_228662.1| sensor histidine kinase [Thermotoga maritima MSB8]
 gi|4981387|gb|AAD35935.1|AE001752_2 sensor histidine kinase [Thermotoga maritima MSB8]
          Length = 489

 Score =  286 bits (733), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 81/410 (19%), Positives = 168/410 (40%), Gaps = 37/410 (9%)

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
           +      + +   P  +  +  + +         ++     R++E     +  IL    +
Sbjct: 101 RMFGSLIVLLNHQPSMEETEIFKVLSFLSAV--VLENIKLYRELEETYNYVNVILNGLPE 158

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
           GI +    G I   N    +                               E +SL  ++
Sbjct: 159 GIFVY-SNGEIKFQNEKFKE---------------ENFPDEVLRKAISLSEEAISLRTQR 202

Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
             E I       E+  S+  I   L         + +++E K+ +          ++   
Sbjct: 203 VGEVI-----SGEEFFSITSIPLILGSEVQALTIVENVTESKELER--------LKRIDR 249

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
            K++F+A +SHE+RTPLTAI  ++E I N   G L      E+   I    N + +++N+
Sbjct: 250 MKTEFIANISHELRTPLTAIKAYAETIYNS-LGELDLSTLKEFLEVIIDQSNHLENLLNE 308

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLR 702
           LLD S++E   + ++ E V L + V  A++ ++ +A+   + +        P     D  
Sbjct: 309 LLDFSRLERKSLQINREKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPCPVEAYIDPT 368

Query: 703 SVKQIALNILSNAIHFTPSGGQ---IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKP 759
            ++Q+ LN+L+N + ++        + +      +  V++ V D G+G+ ++  ++  + 
Sbjct: 369 RIRQVLLNLLNNGVKYSKKDAPDKYVKVILD-EKDGGVLIIVEDNGIGIPDHAKDRIFEQ 427

Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           F ++ +S      GTGLGL + K +V+ + G+ ++ S   KG+   +  P
Sbjct: 428 FYRVDSSLTYEVPGTGLGLAITKEIVELHGGRIWVESEVGKGSRFFVWIP 477


>gi|15598658|ref|NP_252152.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PAO1]
 gi|9949605|gb|AAG06850.1|AE004767_1 probable sensor/response regulator hybrid [Pseudomonas aeruginosa
           PAO1]
          Length = 919

 Score =  286 bits (733), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 77/257 (29%), Positives = 133/257 (51%), Gaps = 8/257 (3%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I+  K+E  +   A + A  E+  KS FLA++SHEIRTPL  ++G  +++++        
Sbjct: 384 INALKEEGFRSRQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPLDRG-- 441

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
                Y   I  SG+ ++ ++ND+LD ++IESGK++L      L+E +S+ ++L    A 
Sbjct: 442 --QAAYVETIASSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAV 499

Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVI 738
           EKR+ +       +PR +  D   ++Q+ +N+LSNA+ FT  G   + +           
Sbjct: 500 EKRLHLHLGLDRGVPRRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVRVQRRFDEGGRER 559

Query: 739 L--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           L   V D+G+G++    +   + F Q  +S   R  G+GLGL +++ +V    G+  + S
Sbjct: 560 LLYSVSDSGIGISAQAQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSS 619

Query: 797 TPAKGTLIEIIFPLYDT 813
            P KGT   +  PL   
Sbjct: 620 EPGKGTRFSVDLPLSPA 636


>gi|297569303|ref|YP_003690647.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296925218|gb|ADH86028.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 1295

 Score =  286 bits (733), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 114/628 (18%), Positives = 237/628 (37%), Gaps = 58/628 (9%)

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
           +       +   + S+       +   + P        V ++      +D+V   E    
Sbjct: 217 RAMIQNRTLTGENISITARGEAPYRYTAAPLKDENGRIVGAVEYIVDIRDEVRVVEMAEA 276

Query: 262 LTSEE-----SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP--SLSAY 314
           +         +   E +          +  +     Q  S+   E ++  +         
Sbjct: 277 IAQGRYDFCITPRSEDDRLSHALNQMASTLKQLEASQEESRWLNEGVAAVSDRLHGEHDQ 336

Query: 315 FDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
                N+    V+   +P   +        +   L L K           G  T +   +
Sbjct: 337 LSLAHNVLEALVEVLDVPVAAF----YLAQDEDTLRLLKVYGGSSASGEAGARTAVHRDE 392

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
                A++   L   +            +      ++A+              +      
Sbjct: 393 GLVGRALQEGRLLVVNDLPPGYLKISSGLGEVDATAVAVL------------PVYFETEL 440

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
              ++   ++     E   L  ++E    G+A+   E           +L     E   +
Sbjct: 441 RCVLELGTHRAFAPREEELLRRVMENI--GVALHTTEVRYELA-----RLLETTQEQSEK 493

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554
                   + T + +      + + + R  +++             LR+  ++L   S  
Sbjct: 494 LQVQQEELRQTNAELQEQARALAASEERLQVQQE-----------ELRVSNEELEERSRS 542

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                   E ++ + +L    +  E    +KS+FLA +SHE+RTPL +I+  S+++   +
Sbjct: 543 LA--EKNRELQKARQELEEKARALEISGRYKSEFLANMSHELRTPLNSILILSQMLATNK 600

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
            G L  PR +EYA  I+ SG+ +L+++N++LD+SKIE+G+M+++ E V+L   +   +  
Sbjct: 601 QGNLL-PRQLEYATTINNSGSDLLNLINEVLDLSKIEAGRMDINPETVNLKALLDSLLHP 659

Query: 675 VQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
            +  A EK++ +    A+++P  I +D   + QI  N+LSNA+ FT  G ++ I+     
Sbjct: 660 FRPLAEEKQLTLVGELADDLPVTIYSDETRLGQILKNLLSNALKFTAEG-EVKITIGRPE 718

Query: 734 NEEV------------ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           N+++            + +VRDTG+G+   +LE   + F Q   +   +  GTGLGL ++
Sbjct: 719 NDKLPPGLKLNPARTLVFQVRDTGIGIAADKLEVVFEAFKQADGTTSRKFGGTGLGLSIS 778

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           + +     G+    S   +G++  +  P
Sbjct: 779 RQLARLLGGELTAASRAGEGSVFTLWLP 806


>gi|295103585|emb|CBL01129.1| Signal transduction histidine kinase [Faecalibacterium prausnitzii
           SL3/3]
          Length = 1079

 Score =  286 bits (733), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 78/255 (30%), Positives = 131/255 (51%), Gaps = 9/255 (3%)

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           S+ ++   KL  A + AE  +  KS FL+ +SH+IRTP+ AIIGF+ +  +         
Sbjct: 546 SDTQELNAKLQVAVEKAESANRAKSTFLSNMSHDIRTPMNAIIGFTTLALSNID---DTD 602

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
           R  +Y      S N +L ++ND+LD+S+IESGK++L    V+L + + +  ++V      
Sbjct: 603 RVKDYLGKTLASSNHLLSLINDVLDMSRIESGKIHLEEVEVNLSDVLHDLKTIVSGQIYA 662

Query: 682 KRILIRTS-FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN-----E 735
           K++ +           +  D   + QI LN+LSNAI FTP+GG + +     +       
Sbjct: 663 KQLELYMDAMDVTDEDVYCDKTRLNQILLNLLSNAIKFTPAGGTVSVRVRQLAGKVRGCG 722

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
           +   R++D G+GM+    +K  +PF +   S     +GTGLG+ + K +VD   G   + 
Sbjct: 723 QYEFRIKDNGIGMSQEFAQKIFEPFERERTSTVSGIQGTGLGMAITKNIVDMMGGTIEVQ 782

Query: 796 STPAKGTLIEIIFPL 810
           +   KGT   +  P+
Sbjct: 783 TAQGKGTEFTVCVPM 797


>gi|292491557|ref|YP_003526996.1| PAS sensor protein [Nitrosococcus halophilus Nc4]
 gi|291580152|gb|ADE14609.1| PAS sensor protein [Nitrosococcus halophilus Nc4]
          Length = 508

 Score =  286 bits (733), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 95/508 (18%), Positives = 180/508 (35%), Gaps = 29/508 (5%)

Query: 317 EGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
               L    ++ C    ++Y   G   YANPS L       ++ +         L A  +
Sbjct: 13  PFSGLFKAALEACADHIYIYDREGRYLYANPSGLEELGL-PLEAVIGRSWRELGLPADIM 71

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
                   +++               T   +  +     ++     N             
Sbjct: 72  ERFECDLQIVITSGKPQISPI-----TYSRDGGSRYY-EYLLSPVNNAANTVQMVVATGR 125

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
           +       +++      +  ++ EA  DGI ++N EG I   N    +LFGYP E +L +
Sbjct: 126 DITPLIEAEKQARENQQRFRNLCEAAPDGIVLVNPEGAISLVNTQTEQLFGYPREALLGQ 185

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTL--EKITLGSTKEEKLLSLRIIIKKLPFSSC 553
           P    + +    +   Y T        Q +   +   G   +     + + +        
Sbjct: 186 PPEKLIPELYRKLHAQYRTAHQQSPTTQEIGVGRKLYGLRADGTKFPVEVALSSFVSQRG 245

Query: 554 --YSLTMHDISEWKQEKNK-------LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
                 + DI+  KQ + K       L H  +   + +     F   VSH++R PL A+ 
Sbjct: 246 TKTIAIIRDITVRKQAEEKIRGLNRSLQHKLQELARVNQELEAFSYSVSHDLRAPLRAMT 305

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           GFS+V+    +G + +     Y + I  +      +++ LL +S+I   +  L    ++L
Sbjct: 306 GFSKVLWED-YGEVLDEDGKHYLSRIQGASQRTGLLLDGLLQLSRI--NRHELDRSKLNL 362

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724
               +E ++ ++    E+ + I            AD + ++    N+LSNA  +T +   
Sbjct: 363 SVLAAEIVNELRQEQPERGVDIYIQPD---ITAAADSKLLRICLENLLSNAWKYTRAQKY 419

Query: 725 IIIS-TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
             +  T      E I  + D GVG       K  + F ++ N  +   EG G+GL   + 
Sbjct: 420 PQVKFTCLEKKGEQIFIISDNGVGFNPNYQSKLFQVFQRLHN--EHEFEGLGIGLATVQR 477

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIF-PL 810
           +V  + G  +      +G        PL
Sbjct: 478 VVHRHGGTIWAEGEEGQGASFCFTLSPL 505



 Score = 62.7 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/392 (8%), Positives = 102/392 (26%), Gaps = 34/392 (8%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP--NNHIGDLLKRQNTWYGKT 147
           D  G     +    + +G     +IG    ++     I       +  ++          
Sbjct: 33  DREGRYLYANPSGLEELGLPLEAVIGRSWRELGLPADIMERFECDLQIVITSGKPQIS-P 91

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
             +  +G + Y    L+  P+ +                     +     +   ++F +L
Sbjct: 92  ITYSRDGGSRYYEYLLS--PVNNAANTVQMV--VATGRDITPLIEAEKQARENQQRFRNL 147

Query: 208 HEIKKGHSSVEKEKY----------DIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257
            E       +   +            +F         +   K+        H       +
Sbjct: 148 CEAAPDGIVLVNPEGAISLVNTQTEQLFGYPREALLGQPPEKLIPELYRKLHAQYRTAHQ 207

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
           + P  T++E  +  +      +  ++  +    +    S+   + ++     ++    +E
Sbjct: 208 QSP--TTQEIGVGRKLYGLRADGTKFPVEVALSSF--VSQRGTKTIAIIRDITVRKQAEE 263

Query: 318 GENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
                  ++        +     +     +F     +     +    G S +L       
Sbjct: 264 KIRGLNRSLQHK-----LQELARVNQELEAFSYSVSHDLRAPLRAMTGFSKVLWEDYGEV 318

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWN--------RENSLAMTFIPFEKANQFPENMP 429
            +      L R           L  +             + L ++ +  E  N+  +  P
Sbjct: 319 LDEDGKHYLSRIQGASQRTGLLLDGLLQLSRINRHELDRSKLNLSVLAAEIVNELRQEQP 378

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
           + G++             ++  + L ++L   
Sbjct: 379 ERGVDIYIQPDITAAADSKLLRICLENLLSNA 410



 Score = 46.2 bits (108), Expect = 0.022,   Method: Composition-based stats.
 Identities = 18/154 (11%), Positives = 44/154 (28%), Gaps = 11/154 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNT-----W 143
           ++  G +  ++ +  +  G     ++G     +   L+   +       ++  T      
Sbjct: 158 VNPEGAISLVNTQTEQLFGYPREALLGQPPEKLIPELYRKLHAQYRTAHQQSPTTQEIGV 217

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             K      +GT   V + L++           G +   I+    V        + L++ 
Sbjct: 218 GRKLYGLRADGTKFPVEVALSSFVSQR------GTKTIAIIRDITVRKQAEEKIRGLNRS 271

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK 237
             H  +     +   +      S     P   M 
Sbjct: 272 LQHKLQELARVNQELEAFSYSVSHDLRAPLRAMT 305


>gi|163842855|ref|YP_001627259.1| integral membrane sensor signal transduction histidine kinase
           [Brucella suis ATCC 23445]
 gi|163673578|gb|ABY37689.1| integral membrane sensor signal transduction histidine kinase
           [Brucella suis ATCC 23445]
          Length = 609

 Score =  286 bits (733), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 93/349 (26%), Positives = 168/349 (48%), Gaps = 4/349 (1%)

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
             ++ EGI+ S +   +KL G   + +        +           L ++ +    + +
Sbjct: 211 FGLDIEGIVSSVDGETAKLLGVQPKMLEGTALIDRVHVADRVQYLSLLADLRAGMATRKV 270

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
           +            +      +        +L    +   ++  ++++  K   E E   K
Sbjct: 271 DVRLRSIE-NGNPVFRAYRFEGAGSDRAITLIGRSLEGEQKLLDEIAMLKAELESERIGK 329

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
              LA VSHE+RTPL +IIGFS+++ ++  G L + R  EYA  I +SG+ +L++VN +L
Sbjct: 330 GRLLATVSHELRTPLNSIIGFSDMLTHEIGGKLASDRQREYAGLIHQSGHYLLELVNAVL 389

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
           D S++E+G  ++  +     +AV    +++   A +K +       N +  ++AD R+V+
Sbjct: 390 DNSRLETGTYSIAPQSFVFRDAVEMCTAVMLPQAEKKGVAFCHRVGNGVGELVADRRAVQ 449

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNE---EVILRVRDTGVGMTNYELEKAMKPFGQ 762
           QI LN+ SNA+ FT SGG + I       +    +   V DTG+G+   +L++   PF +
Sbjct: 450 QILLNLASNAVKFTQSGGCVTIDAARVMADGCPMLEFSVSDTGIGIEPEDLQRIGTPFVR 509

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
             NS     EG+GLGL + K +V+ + G   + S P +GT++ I  PL 
Sbjct: 510 AGNSYTQAQEGSGLGLSVVKGLVELHQGSMQLKSRPGEGTVVMIRLPLA 558


>gi|148359676|ref|YP_001250883.1| response regulator TutC [Legionella pneumophila str. Corby]
 gi|148281449|gb|ABQ55537.1| response regulator TutC [Legionella pneumophila str. Corby]
          Length = 816

 Score =  286 bits (733), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 85/409 (20%), Positives = 158/409 (38%), Gaps = 56/409 (13%)

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV----- 508
             SI ++  D   +++R+  I+  + A  +      + IL K       +N         
Sbjct: 12  FKSIFDSLPDLYLLLDRDFNIVGVSDAYLQATMVNRKQILGKNVFDAFPENPNDPKATGA 71

Query: 509 --MNHYLTEILSLDLRQTLEK----ITLGSTKEEKLLSLRIII------KKLPFSSCYSL 556
             +   L  +L      T+      I   + +                            
Sbjct: 72  KNLYASLHRVLKNKSADTMAIQKYDIQRPADRGGGFEERYWSPINTPVLGAEQEVEYIIH 131

Query: 557 TMHDISEWK---------------------QEKNKLSHAKKIAEKESSH----------- 584
            + D++E+                      + + ++    +  ++ +             
Sbjct: 132 RVEDVTEFVHLKKTGSAQLKLMEELRTKAGEMEIEIYQRAQEIQEANKQLEEANKNLARL 191

Query: 585 ---KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
              K+ F A VSHE+RTPL  I+G  E++  ++  P      +     I  +  ++L  V
Sbjct: 192 DQIKTQFFANVSHELRTPLMLILGSLEMLLAEKRLPSF---VLNTLRRIQNNAQILLKHV 248

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701
           NDLL+ISK+++GKM LH+  + L + + + I+L +    E++ +      + + +   D 
Sbjct: 249 NDLLNISKLDAGKMILHYANIDLVKLIQQTIALFEAQIPERKFVFSMDLPDEL-QAQMDP 307

Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761
             ++ + +NILSNAI FTP   ++ I    T+ E   L++ D G G+     E   + F 
Sbjct: 308 DKIQHVLINILSNAIKFTPQNAKVRIRLAQTNPETCRLQIEDNGSGIPPDLCETIFERFF 367

Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           Q+         GTGLGL +AK  V+ + G     +    G +  I  PL
Sbjct: 368 QVEEPTTRTVGGTGLGLSIAKDFVELHGGSILAGNARNGGAIFTIELPL 416



 Score =  157 bits (397), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 96/232 (41%), Gaps = 12/232 (5%)

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
           +K       F+   SH+++ PL A+      I  +  G + + +  +Y   + +  + + 
Sbjct: 587 KKAEDELDQFVYHASHDLKAPLPAMEHLISWI-EEDLGEMLSEQSKKYLLLLRQRASRMS 645

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
            +++ LL  +  +SG +      +  D  +++ I  +          +     + +P + 
Sbjct: 646 KLLDGLLKYA--QSGYVFDKVRTIHTDRLITDIIKKLNP-----PQTVTFQLEDTLPVLN 698

Query: 699 ADLRSVKQIALNILSNAIHFTP-SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757
                ++++   +L N+I       G III T    +      V D G G+     ++  
Sbjct: 699 TCELPLREVFTALLDNSIRHHHRKDGHIIIGTK-EKDRFYEFFVADDGPGIEKKYQDRIF 757

Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           + F  +    ++    +G+GL +AK +V+   GK  + S   KG++   ++P
Sbjct: 758 QLFQTLQPRDKLET--SGVGLSIAKKIVEFQGGKISVESEKNKGSVFRFLWP 807


>gi|294054185|ref|YP_003547843.1| histidine kinase [Coraliomargarita akajimensis DSM 45221]
 gi|293613518|gb|ADE53673.1| histidine kinase [Coraliomargarita akajimensis DSM 45221]
          Length = 1191

 Score =  286 bits (733), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 83/274 (30%), Positives = 144/274 (52%), Gaps = 10/274 (3%)

Query: 541  LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
            LR+   +L       L      E +++  +L  AK+ AE  +  KS+F A +SHEIRTP+
Sbjct: 790  LRLRASRLHHQRLEELVGQRTQELQRQSEELVIAKEHAESANRIKSEFTANISHEIRTPM 849

Query: 601  TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
             +I+GF+++++++      NP +  Y + + +SG+ +L +++DLLD+SK+E+ K++LH  
Sbjct: 850  NSIMGFADILRDETV----NPTHQHYLDAVLKSGDTLLHMIDDLLDMSKLEADKLSLHPR 905

Query: 661  PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFT 719
            P +L     + + + Q   +EK + +      NIP  +L D    +Q+ LNI+ NAI FT
Sbjct: 906  PTNLSSETRDTLRMFQPKLSEKALDLEFLSDPNIPSSLLIDATRYRQVLLNIVGNAIKFT 965

Query: 720  PSGGQIIISTTHTSN----EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
             SG +I I             V   + DTG G+   +L++    F Q          G+G
Sbjct: 966  DSG-KISIRLELVRQYALHAHVRCAISDTGEGIPENQLQRIFNAFEQASRDFTRSEMGSG 1024

Query: 776  LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            LGL ++K +V+   G+  + S   +G+   + FP
Sbjct: 1025 LGLAISKRLVEMMDGQIRVVSRVGRGSTFTVDFP 1058


>gi|251795843|ref|YP_003010574.1| GAF sensor hybrid histidine kinase [Paenibacillus sp. JDR-2]
 gi|247543469|gb|ACT00488.1| GAF sensor hybrid histidine kinase [Paenibacillus sp. JDR-2]
          Length = 890

 Score =  286 bits (733), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 73/236 (30%), Positives = 120/236 (50%), Gaps = 3/236 (1%)

Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
           +  EK S +KS+FLA +SHE+RTPL +I+  S+++       L N     YA  I  SG 
Sbjct: 482 EQLEKSSQYKSNFLANMSHELRTPLNSILILSQLLAENENHTL-NEDEEGYAKVIHTSGT 540

Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695
            +L +++D+LD+SKIE+GK+ L  + V+L E            A ++ +      A ++P
Sbjct: 541 DLLKLIDDILDLSKIEAGKVILTVDEVNLTEIPELMKLTFNPIAEKRGVGFAIDMAESLP 600

Query: 696 RIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELE 754
            +   D + ++QI  N+LSNA  FT  G  + +   +T +  + + V DTG+G+   + +
Sbjct: 601 AVWYTDGQRLQQILKNLLSNAFKFTEQGS-VRLGFDYTDDGMLAISVTDTGIGIPKDKQK 659

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
              + F Q+         GTGLGL +    V    G   + ST  +G+   +  PL
Sbjct: 660 LIFEAFQQVDGKTNRIYGGTGLGLSICNEFVKLLGGSIQLDSTLGEGSCFTVYLPL 715


>gi|16127421|ref|NP_421985.1| sensory box histidine kinase/response regulator [Caulobacter
           crescentus CB15]
 gi|221236230|ref|YP_002518667.1| PAS-family sensor histidine kinase [Caulobacter crescentus NA1000]
 gi|13424865|gb|AAK25153.1| sensory box histidine kinase/response regulator [Caulobacter
           crescentus CB15]
 gi|220965403|gb|ACL96759.1| PAS-family sensor histidine kinase [Caulobacter crescentus NA1000]
          Length = 642

 Score =  286 bits (733), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 88/490 (17%), Positives = 176/490 (35%), Gaps = 41/490 (8%)

Query: 331 IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390
             F V     +  ANP++  LT + + D +     +        L D   +         
Sbjct: 27  DMFVVLRDSRIIRANPAWSQLTGWAAEDTLGRE--IRDFFH---LHDTEVLTAAGHTLKT 81

Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450
                +  RL       +    +         +    +       ED      + + E  
Sbjct: 82  VGHAHSENRLAR-----KGGGWLWVRTQSTILEGGGQLIVFQDISEDRAREAARLQAERS 136

Query: 451 VMQLCSILEATSDGIAIINREGIILST-----NRAVSKLFGYPVEDILRKPFTVFLEQNT 505
              L     A    +   N    + +        +  +        +     T  +    
Sbjct: 137 NELLR---NAAGVYVWRFNPRRGVYAFDQDIPTPSAPE---GGARTMTVAEMTQSIHPED 190

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL---LSLRIIIKKLPFSSCYSLTMHDIS 562
            + +    +  L       ++   L    ++ +   ++ R +    P +        +++
Sbjct: 191 SARVWQAFSRTLQTGEHVEIDYRYLDPGADDWIHLHVAWRGVRGSSPDTYDVIGITQNVT 250

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E       L  A+  A   +  KS FLA +SHEIRTP+  ++G   ++K ++    G   
Sbjct: 251 E-------LVAARDAALAAAETKSQFLANMSHEIRTPMNGVLGVLHLLKTEKLSDDG--- 300

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                      G ++  ++ND++D SKIE+GK+ L  EPV   E +     +++  A  K
Sbjct: 301 -RRLLTEALSCGEMLSALLNDIIDFSKIEAGKLELSAEPVCPAELLRGVADMLRAQAETK 359

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI-IISTTHTSNEE----- 736
            + +R   ++++  +  D   ++Q   N++ NA+ FT  GG +  +S     + +     
Sbjct: 360 GLYLRVEASDDLGWVATDPLRLRQALFNLIGNAVKFTLEGGVVARLSGRRIDSPDGARLR 419

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           +   + DTGVG+      +  + F Q   S   R  G+GLGL + + + +   G+    S
Sbjct: 420 LRFEIDDTGVGIGEEAGARLFERFRQGDGSTTRRFGGSGLGLAICRRLAELMGGEVGFES 479

Query: 797 TPAKGTLIEI 806
              KG+   +
Sbjct: 480 QLGKGSTFWL 489



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 47/127 (37%), Gaps = 5/127 (3%)

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
            + + D   ++ R+  I+  N A S+L G+  ED L +    F   +   V+      + 
Sbjct: 22  FQNSLDMFVVL-RDSRIIRANPAWSQLTGWAAEDTLGREIRDFFHLHDTEVLTAAGHTLK 80

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI 577
           ++    +  +    + K    L +R     +       +   DISE +  +     A++ 
Sbjct: 81  TVGHAHSENR---LARKGGGWLWVR-TQSTILEGGGQLIVFQDISEDRAREAARLQAERS 136

Query: 578 AEKESSH 584
            E   + 
Sbjct: 137 NELLRNA 143



 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/205 (7%), Positives = 50/205 (24%), Gaps = 14/205 (6%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150
               +   +    +  G  A   +G  + D   +   +     G  LK     + +  L 
Sbjct: 33  RDSRIIRANPAWSQLTGWAAEDTLGREIRDFFHLHDTEVLTAAGHTLKTVGHAHSENRLA 92

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
              G   ++ +        +++    G     +      D    A   + ++    L   
Sbjct: 93  RKGGG--WLWV-------RTQSTILEGGGQLIVFQDISEDRAREAARLQAERSNELLRNA 143

Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL----TEYYAHKDDVLKTEKYPLLTSEE 266
              +      +  +++     P        +          +   +           + +
Sbjct: 144 AGVYVWRFNPRRGVYAFDQDIPTPSAPEGGARTMTVAEMTQSIHPEDSARVWQAFSRTLQ 203

Query: 267 SSLPEQEDFHTIN-LNQYTKKQYFG 290
           +    + D+  ++         +  
Sbjct: 204 TGEHVEIDYRYLDPGADDWIHLHVA 228


>gi|297521246|ref|ZP_06939632.1| hybrid sensory histidine kinase BarA [Escherichia coli OP50]
          Length = 583

 Score =  286 bits (733), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 85/333 (25%), Positives = 153/333 (45%), Gaps = 17/333 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +FG+ +   +  P    +               L   +   +             +++ +
Sbjct: 29  IFGWRLMRDVTGPIRNMVNTVDR-----IRRGQLDSRVEGFMLGELDMLKNGINSMAMSL 83

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 84  AAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTP 143

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+ +       P       ++ N I+RS N +L I+ND+LD SK+E+GK+ L  
Sbjct: 144 LNGVIGFTRLTLKTELTPT----QRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILES 199

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P  L   + E ++L+   +++K + +  +  +++P  ++ D   ++QI  N++ NAI F
Sbjct: 200 IPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKF 259

Query: 719 TPSGGQ-IIISTTHTSNEEVILRV--RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T +G   I++     SN +V + V  RDTG+G+   +  +  + F Q   S   R  GTG
Sbjct: 260 TENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTG 319

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           LGL + + +V+   G     S P +G+      
Sbjct: 320 LGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 352


>gi|293392589|ref|ZP_06636909.1| phosphate regulon sensor histidine kinase protein PhoR [Serratia
           odorifera DSM 4582]
 gi|291424991|gb|EFE98200.1| phosphate regulon sensor histidine kinase protein PhoR [Serratia
           odorifera DSM 4582]
          Length = 438

 Score =  286 bits (733), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 70/403 (17%), Positives = 149/403 (36%), Gaps = 35/403 (8%)

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
            + L +         ++       G+       R  +R++ + + +  S  E+  D + +
Sbjct: 54  SHWLWVDRSMTPPPGRWSWEPLFYGLYQMQQRNRRRRRELALLIKRFRSGAESLPDAVVM 113

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
              EG I   N     L G+   +   +     L     S              +Q   +
Sbjct: 114 TTEEGNIFWCNGLAQHLLGFRWPEDNGQHILNLLRYPEFSSYL----------QQQEFSR 163

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
                   E  +  R++           +   D+++ +Q +                + +
Sbjct: 164 PLTLQLNNEHYVEFRVMPY---SEGQLLMVARDVTQMRQLEG--------------ARRN 206

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           F A VSHE+RTPLT + G+ E++ +Q        +     + +      +  +V  LL +
Sbjct: 207 FFANVSHELRTPLTVLQGYLEMMSDQEMDGSLRSKA---LSTMQEQTRRMDGLVKQLLTL 263

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE-KRILIRTSFANNIPRILADLRSVKQ 706
           S+IE+  +    E V +   +       Q  +    +I  R +   +  ++  +   ++ 
Sbjct: 264 SRIEAAPIVDMNEKVDVPLMLRVLQREAQSLSGGNHQITFRVN---DGLKVFGNEDQLRS 320

Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
              N++ NA++ TP+G  I +S   T +     +V D G G+    + +  + F ++  +
Sbjct: 321 AVSNLVYNAVNHTPTGTHIEVSWQQTPHG-AQFQVSDNGPGIAAEHIPRLTERFYRVDKA 379

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +  +  G+GLGL + K  +  +  +  + S P  GT      P
Sbjct: 380 RSRQTGGSGLGLAIVKHALGHHDARLEVLSEPGLGTRFIFTLP 422


>gi|241205034|ref|YP_002976130.1| histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240858924|gb|ACS56591.1| histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 511

 Score =  286 bits (733), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 102/249 (40%), Positives = 154/249 (61%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I+E +  K+    A++ AE+ +  KS FLA +SHE+RTPL AI+GFSEV+  +  GPL N
Sbjct: 238 IAELEVAKSMSDEARRRAEEANLAKSRFLASMSHELRTPLNAILGFSEVMSAEVMGPLAN 297

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
           P Y EYA  I RSG  +LD++N++LD+S+IE+GK  L  E +SL +   + I +VQL A 
Sbjct: 298 PTYKEYAGDIHRSGQHLLDLINEILDLSRIEAGKYELSEEAISLLDITEDCIGMVQLRAR 357

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
            K I I   F   +P I AD +S++Q+ LN+LSNA+ FTP GG+I +    T+     + 
Sbjct: 358 AKNIAISDQFERQLPAIWADEKSMRQVVLNLLSNAVKFTPQGGEIHVKVGWTAGGGQYIS 417

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           ++D G G+   E+   +  FGQ   + +   +GTGLGLP+ +A++  + G+F + S   +
Sbjct: 418 IKDNGPGIPEEEIPVVLSAFGQGSIAIKSAEQGTGLGLPIVQAILAKHDGQFLLKSKLRE 477

Query: 801 GTLIEIIFP 809
           GT +  I P
Sbjct: 478 GTEVIAILP 486


>gi|298482966|ref|ZP_07001148.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
 gi|298270938|gb|EFI12517.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
          Length = 660

 Score =  286 bits (733), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 100/517 (19%), Positives = 193/517 (37%), Gaps = 43/517 (8%)

Query: 318 GENLTPETVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
            +NL     +   +   +Y    L    N S L     K   DI      +    + ++ 
Sbjct: 10  ADNLLHNIFNDLSVGLELYDKDGLMIDVNYSRLRSMGIKDKKDILGYNLFNYTSFSDEIK 69

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           +       + + +          L     +      +T           E      I  +
Sbjct: 70  EQVRKGETVRFMAKYNFDDVR-HLFPTNLSGIKFFEITVSFVHNEKS--EITNYMVISQD 126

Query: 437 DVDTR--------------INKRKMEIEVMQL-------CSILEATSDGIAIINREGIIL 475
             +                 +K+++     ++         +L   + G+A I  + I+ 
Sbjct: 127 VTERVLWQNKYDNLYEEAVRSKKELLESEQRMIQLIRQNELVLNNINSGLAYIANDYIVQ 186

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
             N ++             +   +     T    N  +         +++    L +   
Sbjct: 187 WENISLCSKSLSYEAYKKGELCYLTAHNRTTPCENCVIQRARRSGQVESI----LFNLDN 242

Query: 536 EKLLSLRIIIK--KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
           + ++ +       +        + + D++E +    +L  A+  AE+    KS FLA +S
Sbjct: 243 KHVIEVFATPIFNEQGDVDGVVIRVDDVTERQHMIGELETARSRAEQSDKLKSAFLANMS 302

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HEIRTPL AI+GFS+++              E+   I+ +  L+L ++ND+LD+SKIE+G
Sbjct: 303 HEIRTPLNAIVGFSDLLM----VTEDQEEKEEFIQIINANNELLLKLINDILDLSKIEAG 358

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713
            + L +E   L    +E  + +       ++ +          +  D   + QI  N ++
Sbjct: 359 SVELKYEDFDLAVYFNELAASMHRRVVNPQVRLVPVNPYETCTVRLDKNRLAQILTNFVT 418

Query: 714 NAIHFTPSGGQIIISTTHTS-NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           NAI +T  G    I   +   + ++ L VRDTG+G+   + +K    F ++        +
Sbjct: 419 NAIKYTSKG---TIEMGYEKIDGDIRLYVRDTGIGIPEDKKDKVFHRFEKLD----EFAQ 471

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GTGLGL + KA+V+A  G+    S   KG+L   + P
Sbjct: 472 GTGLGLSICKAIVEACRGEIGFESEFDKGSLFWAVLP 508


>gi|269102304|ref|ZP_06155001.1| sensory box sensor histidine kinase/response regulator VieS
           [Photobacterium damselae subsp. damselae CIP 102761]
 gi|268162202|gb|EEZ40698.1| sensory box sensor histidine kinase/response regulator VieS
           [Photobacterium damselae subsp. damselae CIP 102761]
          Length = 1249

 Score =  286 bits (733), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 84/379 (22%), Positives = 162/379 (42%), Gaps = 20/379 (5%)

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
           E       ++K   ++  L  I+E+    + + +     +  N    + F         +
Sbjct: 541 EVKRREKAEKKAVQQLDLLNEIIESIPSMLLMQDTNNQRVFWNNNYKETFSQFWNHNNMQ 600

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--- 552
           P      ++T        T I   +  +   + T+    +   + L    K +       
Sbjct: 601 PSWEEYNKSTLENATVLKTGIDINNTSKNNLRQTIL--PDGTTVDLIYTKKLIKDRDNNK 658

Query: 553 -CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
                 + D+S+  Q + K       AE+    ++ FLA +SHE+RTP+ ++IG  ++++
Sbjct: 659 LGVMTVLTDVSDLIQAQEK-------AERAMQARTHFLATMSHELRTPIASMIGLIDILE 711

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
            +      +   + Y   +  S N +L +VND+LD S+IE+G++ L ++P      +  +
Sbjct: 712 TKN----PSQEQLNYIKNLKSSTNHLLYLVNDILDFSQIEAGQLKLDYQPCRWLTEIGLS 767

Query: 672 ISLVQLYANEKRILIRTSFANN-IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
           +      A  K +     +    +  +  D   V Q+  N+LSNAI FT +G  I +   
Sbjct: 768 LINFAQEAQHKGVKFNLFWQPTKLTTLTIDSIRVNQVINNLLSNAIKFTEAGS-ISVYIE 826

Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
            T +  ++++V DTG+G+    +++   PF Q   +      GTGLGL + K +V+   G
Sbjct: 827 LTQH-SLLVKVIDTGIGIHEDNIKRLFSPFEQAEKTISRTYGGTGLGLSICKQLVEMMNG 885

Query: 791 KFYIFSTPAKGTLIEIIFP 809
           K  + S   +GT +    P
Sbjct: 886 KIELHSQLNEGTTVIFKVP 904


>gi|116249454|ref|YP_765295.1| putative repetitive two-component sensor histidine kinase
            transcriptional regulatory protein [Rhizobium
            leguminosarum bv. viciae 3841]
 gi|115254104|emb|CAK12501.1| putative repetitive two-component sensor histidine kinase
            transcriptional regulatory protein [Rhizobium
            leguminosarum bv. viciae 3841]
          Length = 1211

 Score =  286 bits (733), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 103/783 (13%), Positives = 230/783 (29%), Gaps = 69/783 (8%)

Query: 79   IPRTVRFTWNIDAHGYLKEISEELPKTI-------GNYAFKMIGMRLCDVSDILH-IDPN 130
                VR  W+++  G     ++                A   I   L  +       D  
Sbjct: 453  DAVPVR-IWSVEPTGGSTYFNKRYQDHFRAVIANFDARAEPRIDELLQQLIHPEDAPDVQ 511

Query: 131  NHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVD 190
              + +  +       +      +G  +Y   +    P    +      + +G+      +
Sbjct: 512  RTLRNCFEIGGGSVMRFRWLEKDG--VYRWAECRVEPRRDDDGTVV--QWYGVSLDIDEE 567

Query: 191  NDPRALGKRLDKKFSHLHEIKK----------GHSSVEKEKYDIFSQQSPPPHLRMKNKV 240
                   +  +++ S L ++                  K   D F            +++
Sbjct: 568  VRALEALRDRERELSQLVDMVPVQIRRLTPEGEPVFFNKRLIDFFGLDVGDMDKPGMSRL 627

Query: 241  SSLTEYYAHKDDV-LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
            SS+     H DD     E      +       +      +            L++ S   
Sbjct: 628  SSVIHTLVHPDDASRLLETVHHSLTSGDPFSIKYRMRRFDGAYRWVDGRAEPLRDQSGAI 687

Query: 300  FEYLSHRNHP----SLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKY 354
             ++                  + E    + VD  P   +     G   + N   +     
Sbjct: 688  MQWYVISVDIDDEMRAQEALRDRERELSQLVDMVPSLLWRLDPEGAPTFFNQRLIDFLGL 747

Query: 355  KSVD-DIEIAGGLSTLLDAPKLSDNNAIKPVMLYR--SDRTCIAASARLHTIQWNRENSL 411
               D +      L+ L++A    D+ A     L    +     ++  RL   +       
Sbjct: 748  DIADTEKPGVSRLAALIEAAVHPDDAAGLEQALNHSFATGQRFSSQYRL---RRADGVYR 804

Query: 412  AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471
             +        +Q    +   G+  +  D    +  +      L  ++E     I     +
Sbjct: 805  WVKGSAEPLRDQSGRIVQWYGLSHDIDDQLRVEEALRERERSLWQLVETLPAMIDCAAPD 864

Query: 472  GIILSTNRAVSKLFGYPVEDILRK-------PFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
            G  +  ++ +    GY +E++               +  +  + +       LS      
Sbjct: 865  GEPIYRSQQLRDFLGYNLEELDGTGKTRLDGTLDAGVHPDDVAGVKENYARSLSTGEP-- 922

Query: 525  LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEK 580
              +       + +   +      +  +    +       DI      +  L  A++   +
Sbjct: 923  YARRHRLRRHDGEYRWVETRAAPMRNAEGVIVQWNVICLDIDGEVHAEEDLRRAREGLAR 982

Query: 581  ESS--HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN-PRYIEYANYIDRSGNLV 637
             S     ++  A ++HE+  PL A++  S   +        N  R       I R  N  
Sbjct: 983  ASQVASLAELSASIAHEVNQPLAAVVANSHACQRWLMAEPPNMERAQRTVERIIRDANSA 1042

Query: 638  LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697
             D+V+ +  + K  + +         L   V+EA +L+   A  + + +       +P +
Sbjct: 1043 ADVVSRIRALFKQSADRRIPST----LSGIVNEARNLMTDEAWRRHVRMEVEVDATLPLV 1098

Query: 698  LADLRSVKQIALNILSN---AIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT-NYEL 753
              D   ++Q+ +N++ N   A+  T     I I      N  +   + D G G+      
Sbjct: 1099 SIDRVQIQQVLINLIRNGIEAMDATTGDRVIEIRVRQIGNI-LQTEISDRGQGIDFPE-- 1155

Query: 754  EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
             K  +PF         +  G G+GL + +++V+ + G+ +       G  +    P+   
Sbjct: 1156 -KMFEPFFTT------KENGMGMGLAICRSIVELHGGRLWAEKNNPCGATLIFTLPIETK 1208

Query: 814  SHP 816
            + P
Sbjct: 1209 AAP 1211



 Score =  155 bits (392), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 52/533 (9%), Positives = 143/533 (26%), Gaps = 41/533 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMI--GMRLCDVSDILHIDPNN------HIGDLL 137
            W +   G     +  +   +G         GM   +      + P++       +   L
Sbjct: 326 VWRLTPEGEPTFFNRRMVDFLGLDVADSDRPGMSRLEAVLQATVHPDDTAGFRDALRHCL 385

Query: 138 KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG 197
               ++  +  L   +G  LY  +   A P+  +  +    + +G+ H            
Sbjct: 386 ATGESFVMRYRLRRADG--LYRWMSSRAEPMRDQAGKIV--QWYGLCHDIDDQMRAEEAI 441

Query: 198 KRLDKKFSHLHEIKKGHSSVEKEKY----------DIFSQQSPPPHLRMKNKVSSLTEYY 247
           +R +K+   + +         +             D F         R + ++  L +  
Sbjct: 442 RRSEKQLLQMIDAVPVRIWSVEPTGGSTYFNKRYQDHFRAVIANFDARAEPRIDELLQQL 501

Query: 248 AHKDDVLKTEKYPLLTSEESSLP-EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
            H +D    ++      E       +  +   +      +      +++     ++    
Sbjct: 502 IHPEDAPDVQRTLRNCFEIGGGSVMRFRWLEKDGVYRWAECRVEPRRDDDGTVVQWYGVS 561

Query: 307 NHP----SLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIE 361
                         + E    + VD  P+    +   G   + N   +        D  +
Sbjct: 562 LDIDEEVRALEALRDRERELSQLVDMVPVQIRRLTPEGEPVFFNKRLIDFFGLDVGDMDK 621

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                 + +    +  ++A + +       T     +  + ++        +        
Sbjct: 622 PGMSRLSSVIHTLVHPDDASRLLETVHHSLTSGDPFSIKYRMRRFDGAYRWVDGRAEPLR 681

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
           +Q    M    I  +  D    +  +     +L  +++     +  ++ EG     N+ +
Sbjct: 682 DQSGAIMQWYVISVDIDDEMRAQEALRDRERELSQLVDMVPSLLWRLDPEGAPTFFNQRL 741

Query: 482 SKLFGYPVEDI-------LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
               G  + D        L       +  +  + +   L    +   R            
Sbjct: 742 IDFLGLDIADTEKPGVSRLAALIEAAVHPDDAAGLEQALNHSFATGQR--FSSQYRLRRA 799

Query: 535 EEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESS 583
           +     ++   + L   S   +      HDI +  + +  L   ++   +   
Sbjct: 800 DGVYRWVKGSAEPLRDQSGRIVQWYGLSHDIDDQLRVEEALRERERSLWQLVE 852



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 18/190 (9%), Positives = 50/190 (26%), Gaps = 13/190 (6%)

Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465
                +   F+     +           +   +  R N   +     +L  +++     +
Sbjct: 267 KHNQIMLQLFLAISAFSALIVAAISRQHQLAVLTLRQNVETLRDRERELSQLVDMVPSHV 326

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF-------LEQNTPSVMNHYLTEILS 518
             +  EG     NR +    G  V D  R   +         +  +  +     L   L+
Sbjct: 327 WRLTPEGEPTFFNRRMVDFLGLDVADSDRPGMSRLEAVLQATVHPDDTAGFRDALRHCLA 386

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHA 574
                 +         +     +    + +   +     +    HDI +  + +  +  +
Sbjct: 387 TGESFVMR--YRLRRADGLYRWMSSRAEPMRDQAGKIVQWYGLCHDIDDQMRAEEAIRRS 444

Query: 575 KKIAEKESSH 584
           +K   +    
Sbjct: 445 EKQLLQMIDA 454


>gi|295097349|emb|CBK86439.1| Hpt sensor hybrid histidine kinase [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 919

 Score =  286 bits (733), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 85/333 (25%), Positives = 152/333 (45%), Gaps = 17/333 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +FG+ +   +  P    +               L   +   +             +++ +
Sbjct: 193 IFGWRLMRDVTGPIRNMVNTVDR-----IRRGQLDSRVEGFMLGELDMLKNGINSMAMSL 247

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 248 AAYHEEMQHNVDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTP 307

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+            NP   ++ + I+RS N +L I+ND+LD SK+E+GK+ L  
Sbjct: 308 LNGVIGFT----RLTLKSELNPTQRDHLHTIERSANNLLTIINDVLDFSKLEAGKLILES 363

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P  L   + + ++L+   +++K + +  +  N++P  ++ D   ++Q+  N++ NAI F
Sbjct: 364 IPFPLRSTLDDVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKF 423

Query: 719 TPSGGQ-IIISTTHTSNEEVILRV--RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T SG   I++     SN +V + V  RDTG+G+   +  +  + F Q   S   R  GTG
Sbjct: 424 TESGNIDILVEKRALSNNKVQIEVQIRDTGIGIPERDQTRLFQAFRQADASISRRHGGTG 483

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           LGL + + +V    G     S P +G+      
Sbjct: 484 LGLVITQKLVKEMGGDISFHSQPNRGSTFWFHI 516


>gi|290968484|ref|ZP_06560023.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Megasphaera genomosp. type_1 str. 28L]
 gi|290781480|gb|EFD94069.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Megasphaera genomosp. type_1 str. 28L]
          Length = 554

 Score =  286 bits (733), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 80/373 (21%), Positives = 162/373 (43%), Gaps = 32/373 (8%)

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
            + +     ++ +  +   I     + + +++  G I++ N +  KLF      I  +  
Sbjct: 208 REIQRTLACLKQKRDEFNQITGNMRESLILLDNAGAIITINLSAKKLFRVTDICI-GRNI 266

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII-IKKLPFSSCYSL 556
              +E +    +  ++ + +     +  E       +  +     +  I          +
Sbjct: 267 ---IEVDRHQNIRDFMQKSMENGHAEFRE------NRNGREYQFDLSRIVSDDAVVGTVI 317

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
              DI+E  + +                + +F A VSHE++TPL  IIG+++++++    
Sbjct: 318 LAFDITEQAEAE--------------RGRREFTANVSHELKTPLQGIIGYTDLMESGLAK 363

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
               PR++ Y   I +  + ++ ++ D++ +S+++ G  ++    VSL     E    + 
Sbjct: 364 SEDIPRFVGY---IKKEASRLVTLIEDIIRLSQLDEGT-DMPVAEVSLGHLADEVCKTLF 419

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
             A  K I +  S A+    +    R + +I  N+  NAI +  SGG + I+ +   ++ 
Sbjct: 420 DAAKSKNISLSWSGADG--NMYGVKRLLYEIVYNLCDNAITYNRSGGSVKITVS-EDDKN 476

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           V L V DTG+G+     E+  + F ++  S   +  GTGLGL + K  V  + GK  + S
Sbjct: 477 VRLEVADTGIGIPAEHQERVFERFYRVDKSHSKQSGGTGLGLSIVKHAVAYHHGKIALES 536

Query: 797 TPAKGTLIEIIFP 809
            P KGT+I + FP
Sbjct: 537 EPNKGTVITVAFP 549


>gi|154490016|ref|ZP_02030277.1| hypothetical protein PARMER_00245 [Parabacteroides merdae ATCC
           43184]
 gi|154089458|gb|EDN88502.1| hypothetical protein PARMER_00245 [Parabacteroides merdae ATCC
           43184]
          Length = 720

 Score =  286 bits (733), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 102/530 (19%), Positives = 199/530 (37%), Gaps = 50/530 (9%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
                   +      +  +  PI   +Y   G L   N +   +        + +     
Sbjct: 209 EESRKRISKLSTKFQQFFNNLPIGVELYDAEGYLIDINDADTKIFGSSREQLLGVN---- 264

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR-------ENSLAMTFIPFEK 420
            L   P + +    +   + +        +   + I+  R       +    +       
Sbjct: 265 -LFKNPAVPERILNQ---IKKKKAFSFPLAYDFNCIRDTRYYNSNISDEVKYLIVKGIGL 320

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
            ++   ++    I  ++ + R+ + + +  +  L ++L +    I   +     L  N  
Sbjct: 321 NDREFGHIGYLLIISDETEKRVKEEQTQNNLAILKAVLLSGHSLIVEYDIGKKELFVNPL 380

Query: 481 VSK------LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
           +++      LF Y   +          +    +   + L +++         +       
Sbjct: 381 LNETPEDNKLFNYLRSN-KYMTIGGVQQIVRSADNVNLLFQVIEGKQDHCSFECRTAIEN 439

Query: 535 EEKLLSLRIIIKKLPFSSC---YSLTMHDISEWKQEKNKLSHAK----------KIAEKE 581
           E   + +     K   S         + +I+E K  + KL HA+          +   + 
Sbjct: 440 ETIWIRINAQAYKTKGSKRQNKMICHITNITEEKLLEEKLHHAEYETRQSELEIQKVREA 499

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
              KS FLA +SHEIRTPL AIIGFS ++              E+   I+++ +L+L ++
Sbjct: 500 DKLKSAFLANMSHEIRTPLNAIIGFSNILAETDDKEEK----EEFVKIINKNSDLLLRLI 555

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR--ILA 699
            D+LD SKIESG ++      SL +   E   +  +   EK + +   F   +P   +  
Sbjct: 556 TDILDFSKIESGVLDYSLSDTSLKDIFHEQFQVHAMKMPEK-VSLICDFDA-LPDIFVHT 613

Query: 700 DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKP 759
           D + V Q+  N++SNA+ FT  G  I  S        V++ V DTG+G++    +     
Sbjct: 614 DPKRVTQVLSNLISNAVKFTEVGS-IRFSYRIVEK-YVLVEVIDTGIGISPQHQQAIFDR 671

Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           F ++ + +    +GTGLGL + K +++A  G   + S P +G       P
Sbjct: 672 FVKVNSFK----QGTGLGLTICKTIIEALNGTIGVDSRPGEGARFWFTLP 717


>gi|317492549|ref|ZP_07950976.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316919299|gb|EFV40631.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 952

 Score =  286 bits (733), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 91/376 (24%), Positives = 159/376 (42%), Gaps = 31/376 (8%)

Query: 446 KMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           ++E        I+ +   GI I+  ++G  + +N                  +       
Sbjct: 353 RLEEHEQFNRKIVASAPVGICILRIKDGSNILSNELA-------------HNYISMFTSE 399

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564
                 H +T I+       ++ I    T + + L +  +  +          M D+S  
Sbjct: 400 DR----HRITRIICEQPSSVVDVI----TSQNQNLQISFVHSRYRNEDVAICVMVDVSAR 451

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
            + +  L      AE+ S  KS FLA VSHE+RTPL  IIG  ++++ +           
Sbjct: 452 VKIEESLQELANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKSL----PEETQ 507

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
                +  S  L+L I++D+LD SKIES ++ +        + +   I         KR+
Sbjct: 508 RLLAAMSNSSGLLLKIISDILDFSKIESEQLKIEPGTFEPRKVIPHIIGNYLPLVVRKRL 567

Query: 685 LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
           ++       +P  +  D+  ++Q+  N+LSNAI FT +G  II+         +  R+RD
Sbjct: 568 VMYCFIEPEVPDSVAGDIMRIQQVLSNLLSNAIKFTDTG-CIILQVRVQDF-YLEFRIRD 625

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TG+G+   ++ K   PF Q+    Q   +GTGLGL + + +V    G   + S P  G++
Sbjct: 626 TGLGIPFRDVMKLFDPFFQVGTGVQRHFQGTGLGLAICEKLVSLMDGDIAVESEPGMGSI 685

Query: 804 IEIIFPLYD--TSHPH 817
             +  P+Y    S+P 
Sbjct: 686 FTVRIPMYQAVASNPQ 701


>gi|317128901|ref|YP_004095183.1| multi-sensor hybrid histidine kinase [Bacillus cellulosilyticus DSM
           2522]
 gi|315473849|gb|ADU30452.1| multi-sensor hybrid histidine kinase [Bacillus cellulosilyticus DSM
           2522]
          Length = 907

 Score =  286 bits (733), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 79/260 (30%), Positives = 135/260 (51%), Gaps = 3/260 (1%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E ++ K  L    K  +  S +KS+FLA +SHE+RTPL +I+  S+++     G L   +
Sbjct: 480 ELEKIKEDLEEKNKSIQLSSRYKSEFLANMSHELRTPLNSILILSQMLSENANGNLSK-K 538

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
            IE+A  I  SG  +LD++ND+LD+SKIESGK+ ++ E + +++  +         A +K
Sbjct: 539 QIEHAETIYSSGKDLLDLINDILDLSKIESGKVEVYPEELFIEDMRAFVERQFHPIAEQK 598

Query: 683 RILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILR 740
            +          P I   D + +KQI  N+LSNA  FT  G  +  +  +++ + +V+  
Sbjct: 599 GLQFNCYIHQETPSILYTDDQRLKQILKNLLSNAFKFTAQGTVRFEVHPSYSESTKVVFS 658

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           + DTG+G+   + E   + F Q   +      GTGLGL +++ + +   G+  + S   K
Sbjct: 659 IIDTGIGIPPEKQESVFEAFHQGDGTTTREYGGTGLGLSISRELANLLGGRIEVVSEDGK 718

Query: 801 GTLIEIIFPLYDTSHPHDCI 820
           G+   +  P YD     D +
Sbjct: 719 GSTFSLYLPDYDKMSDADFV 738


>gi|265762626|ref|ZP_06091194.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
 gi|263255234|gb|EEZ26580.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
 gi|301162192|emb|CBW21737.1| putative two-component system sensor histidine kinase/response
           regulator fusion protein [Bacteroides fragilis 638R]
          Length = 637

 Score =  286 bits (733), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 109/487 (22%), Positives = 180/487 (36%), Gaps = 20/487 (4%)

Query: 325 TVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
            +    I F+ Y    G   +    +  +   K    I     ++         D  + +
Sbjct: 29  VLAGHQIAFWEYDIPTGECNF-TDEYFHILGLKEAGIIFR--DINDFYRFAHPEDVISYQ 85

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
                  +     +   +  +    E           K N+   +               
Sbjct: 86  TTFARMLESETKISQIVVRCVGRQGETIWLEDNFIAYKKNKENGSDKIIAYTANITSRCE 145

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            + ++     +   I+EA  + I I +    I     A      +PVE +          
Sbjct: 146 KEVQIRQLEERNRKIIEALPEFIFIFDDNFFITDVLMAPDTELLHPVEVLTGADGRSIYS 205

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
                +    + E L     + +E               RI        +     +HDI 
Sbjct: 206 SEVSDLFISSIHECLKSGKLKEIEYPVDV-EAGRHFFQARIAP---FEGNKVLALIHDIG 261

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  +   +L  AK+ AE+    KS FLA +SHEIRTPL AI+GFSE+I            
Sbjct: 262 DRMRRSQELLEAKQRAEEADRMKSVFLANMSHEIRTPLNAIVGFSEIIA----LTEDEKE 317

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             EY   I ++ NL+L ++ND+LD+S+IESGK  +H +   +   V E   + +L   +K
Sbjct: 318 KEEYLGIIQQNSNLLLQLINDILDLSRIESGKSEMHCQLTEMSGLVDEVDKVHRLKM-KK 376

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
            + +     +    I  D   V Q+  N LSNAI  T  G  I           V L V 
Sbjct: 377 GVKLNVIRPSEEIWISTDRNRVTQVLFNFLSNAIKNTIEGS-ITFGLVKEEE-WVKLYVT 434

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG G++  +L      F ++        +GTGLGLP+ K++V+   G+  + S   +G+
Sbjct: 435 DTGCGISKEKLPLIFTRFEKL----NDFVQGTGLGLPICKSIVERLGGRIEVESELGQGS 490

Query: 803 LIEIIFP 809
              +  P
Sbjct: 491 TFILYLP 497


>gi|224823456|ref|ZP_03696565.1| multi-sensor signal transduction histidine kinase [Lutiella
           nitroferrum 2002]
 gi|224603911|gb|EEG10085.1| multi-sensor signal transduction histidine kinase [Lutiella
           nitroferrum 2002]
          Length = 434

 Score =  286 bits (733), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 78/369 (21%), Positives = 161/369 (43%), Gaps = 31/369 (8%)

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
              +KRK+   V +  +  EA  DG+ +++    I   N    + FG   +  +      
Sbjct: 86  QSQSKRKLTKTVERFINAGEAMPDGVVVLDEHDRIEWLNPMAVEHFGLDRKRDVGNQIFN 145

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH 559
            + Q   +        + +    Q L  I   S  +E++LS++++      S+   +   
Sbjct: 146 LIRQPAFNAY------MKADRFSQPL--ILRSSQPDERVLSIQLVPF---DSTRKLILSR 194

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           DI++ ++ +                  DF+A VSHE+RTPLT I GF E + +    P  
Sbjct: 195 DITQLERVQTVHR--------------DFVANVSHELRTPLTVIGGFLETLSDMPDNPAL 240

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
                ++   +      +  +V DLL +S++E+   N   E V++ E +   +   +  +
Sbjct: 241 ---LRQFLPMMMEQSRRMQSLVEDLLILSRLENSPKNTANEKVNMSELLDTLMVEAEGLS 297

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
             +   IR     ++  +  + + +     N++SNA+ +TP GG + +       E+++ 
Sbjct: 298 QGRH-QIRLQRDTSL-WLWGNAQELHSAFGNLVSNAVRYTPDGGDVTL-CWKEEGEKLVF 354

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V+D+G+G+    + +  + F ++   +     GTGLGL + K +V  +  +  + S P 
Sbjct: 355 SVKDSGIGIPREHIPRLTERFYRVDRGRSRGNGGTGLGLAIVKHVVARHQARLEVHSEPE 414

Query: 800 KGTLIEIIF 808
           +G+   ++F
Sbjct: 415 RGSTFSVVF 423


>gi|228950120|ref|ZP_04112304.1| hypothetical protein bthur0007_61910 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228809543|gb|EEM55980.1| hypothetical protein bthur0007_61910 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
          Length = 896

 Score =  286 bits (733), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 79/338 (23%), Positives = 147/338 (43%), Gaps = 18/338 (5%)

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            +D++ +            +    +  +L      T E        + +   L++  ++L
Sbjct: 395 HQDLIHQTVDNLGLTIHSIMGRMRIQTLLHESQAMTEELQVQSEELQTQAEELQMQAEEL 454

Query: 549 PFSSCYSLTMHDISEWKQEKN-----KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
             ++    +  + +E K         +L        + S +KS+FLA +SHE+RTPL +I
Sbjct: 455 RTTNEQLESRTEEAEQKTADLQITKLELEEKASELLRSSKYKSEFLANMSHELRTPLNSI 514

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +  SE++K      L +    E A  I  SG  +L ++ND+LD+SK+E+GK+++ FE  +
Sbjct: 515 LLLSEMLKENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIFEATN 573

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSG 722
           + +  +         A +K +      ++ IP +   D + ++QI  N+LSNA  FT  G
Sbjct: 574 ISDMAASMQQNFLHIAAQKNVKFTVEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKG 633

Query: 723 GQ------IIISTTHTS-----NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
                   I  S           + + + V+DTG+G+   + +   + F Q   +   + 
Sbjct: 634 SVSLHFDSIETSNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGATIRKY 693

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            GTGLGL + K       G   + S   +G+   +  P
Sbjct: 694 GGTGLGLSICKEFARLLGGWITLQSHVGEGSTFTVYIP 731


>gi|84386181|ref|ZP_00989210.1| hypothetical two-component sensor [Vibrio splendidus 12B01]
 gi|84378951|gb|EAP95805.1| hypothetical two-component sensor [Vibrio splendidus 12B01]
          Length = 809

 Score =  286 bits (733), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 73/254 (28%), Positives = 123/254 (48%), Gaps = 12/254 (4%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           +   +Q+  +L  AK +AE  + +KS+FLA +SHEIRTP+  IIG S ++          
Sbjct: 219 VERIRQQYQELEKAKDVAEVANRNKSEFLANMSHEIRTPMNGIIGLSSLLSEMDM----P 274

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
               EY + ++ S   +LD++ND+LD SKIE+G++ L  EP+ +    ++  S  ++ A 
Sbjct: 275 KEQKEYVDMLNTSSLTLLDLINDILDYSKIEAGRLELQQEPMKMMGIAADVESTFRVKAE 334

Query: 681 EKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS------ 733
           +K +  + +    IP  ++ D   ++Q+  N++ NAI FT  G  + +S           
Sbjct: 335 QKGLRFQLAIDPKIPTMVIGDGTQLRQVLNNLVGNAIKFTEHG-HVTLSLRLEEVIEPEQ 393

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
              V   V D+G+G+   + +     F Q   S      GTGLGL +   +V     K  
Sbjct: 394 KLRVKFEVTDSGIGIAEDKQQSVFDKFQQADGSTTRIYGGTGLGLTICDKIVTLMGSKLE 453

Query: 794 IFSTPAKGTLIEII 807
           + S   KG+     
Sbjct: 454 LTSVVGKGSTFYFT 467


>gi|158336996|ref|YP_001518171.1| PAS/PAC sensor signal transduction histidine kinase [Acaryochloris
           marina MBIC11017]
 gi|158307237|gb|ABW28854.1| PAS/PAC sensor signal transduction histidine kinase [Acaryochloris
           marina MBIC11017]
          Length = 658

 Score =  286 bits (733), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 84/540 (15%), Positives = 165/540 (30%), Gaps = 52/540 (9%)

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIA 363
             +         E E       D      +V        Y N  +L  T      +IE  
Sbjct: 139 ISDRKLAEVKRIESEQRFQAIADCSSTLIWVADQRNQRTYFNAEWLKFTGRSLKREIEE- 197

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
            G +T +    + D  A   +          +       +         +      +   
Sbjct: 198 -GWATGIHPADVHDCLAAFALAF----EEQRSVQLEYRYLNHAGH-YRWLLDSGRPRFLP 251

Query: 424 FPENMPQNGIEPEDVDTRI-------------------------NKRKMEIEVMQLCSIL 458
             E +   G   +    +                             ++E    +  S+ 
Sbjct: 252 NGEFVGYVGSCIDITPFKQVADSLEQANYQLQENINKSIDALVGANAQLEESEARFRSLA 311

Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
           ++    I + + E +    N+      G  +E      +   +  +        L    S
Sbjct: 312 DSLPALIWVCDTEQLCTYVNQTWQTFTGRSLEQETNLGWLDTIHPDDRPRFIDQLQTCFS 371

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAK 575
            ++   L        +      +         +           DI+  KQ +  L  A 
Sbjct: 372 EEIP--LHLEYRRCDRNGTYRWILNTGIPRYIADQFAGMIGCGLDITVSKQNQVALEQAI 429

Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
               + +    +F    SH++R PL  I  FSE++       + +     Y +Y+     
Sbjct: 430 SELTRSNRDLEEFAYVASHDLREPLRKIRSFSELLVEDYADQI-DDTGRRYFDYVIDGAA 488

Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695
            +  +V  +L  S++  G+     EPV L+  V +  +   L   +K+  I       +P
Sbjct: 489 RMDALVQSVLQYSRV--GRQQEIPEPVDLNTVVQQIANDFSLVIEQKQGWIIYD---ELP 543

Query: 696 RILADLRSVKQIALNILSNAIHFTPSG---GQIIISTTHTSNEEVILRVRDTGVGMTNYE 752
            I+       Q+  N++ NA+ F   G     I +           + V DTG+G+    
Sbjct: 544 TIIISKIESVQLFQNLIGNALKF--HGVQPPHITVK-AQRQGTHWQISVSDTGIGIAPEF 600

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
            ++    F +    Q+ +  GTG+GL + + +V+   G+ +  +   KGT      P  D
Sbjct: 601 CDRVFTMFAR--QHQRDQYPGTGIGLSICRKIVENYGGQIHFETEVGKGTTFIFTLPAMD 658



 Score = 86.6 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 50/443 (11%), Positives = 113/443 (25%), Gaps = 46/443 (10%)

Query: 46  HDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKT 105
                +   TD  Q  ++      S+    +  +   +     +D  G   E++      
Sbjct: 2   ATQPIEEGSTDVVQRQLAEIQQQQSQQQRFYSALQSAMEGIAQLDPQGCFMEVNRTYAHD 61

Query: 106 IGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAA 165
           +G    +++G+          I       +++        +      +G   Y  + + A
Sbjct: 62  VGYSPEELVGLPWQTTVFANDIPILESAYNIMLDTGKISVEARGATKQGAVFYQQLTMVA 121

Query: 166 LPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF 225
               +   EF G   F  +                +++F  + +       V  ++    
Sbjct: 122 N--RNDQGEFLGH--FCFMQNISDRKLAEVKRIESEQRFQAIADCSSTLIWVADQRNQRT 177

Query: 226 SQQS---PPPHLRMKNKVSSLTEYYAHKDDVLK-TEKYPLLTSEESSLPEQEDFHTINLN 281
              +         +K ++        H  DV      + L   E+ S+  +  +     +
Sbjct: 178 YFNAEWLKFTGRSLKREIEEGWATGIHPADVHDCLAAFALAFEEQRSVQLEYRYLNHAGH 237

Query: 282 QYTKKQYFGTLQNNSKESFEYLSHRNHPS-----------------------------LS 312
                         + E   Y+      +                              +
Sbjct: 238 YRWLLDSGRPRFLPNGEFVGYVGSCIDITPFKQVADSLEQANYQLQENINKSIDALVGAN 297

Query: 313 AYFDEGENLTPETVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
           A  +E E       D  P   +V     L  Y N ++   T  +S++     G L T+  
Sbjct: 298 AQLEESEARFRSLADSLPALIWVCDTEQLCTYVNQTWQTFTG-RSLEQETNLGWLDTI-- 354

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
                D+       L       I           N      +            +     
Sbjct: 355 ---HPDDRPRFIDQLQTCFSEEIPLHLEYRRCDRNGTYRWILNTG--IPRYIADQFAGMI 409

Query: 432 GIEPEDVDTRINKRKMEIEVMQL 454
           G   +   ++ N+  +E  + +L
Sbjct: 410 GCGLDITVSKQNQVALEQAISEL 432



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/286 (12%), Positives = 75/286 (26%), Gaps = 11/286 (3%)

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKS 356
           E       +   +        +      +             G     N ++     Y  
Sbjct: 7   EEGSTDVVQRQLAEIQQQQSQQQRFYSALQSAMEGIAQLDPQGCFMEVNRTYAHDVGYSP 66

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
            +++      +T+         +A   ++    D   I+  AR  T Q            
Sbjct: 67  -EELVGLPWQTTVFANDIPILESAYNIML----DTGKISVEARGATKQ---GAVFYQQLT 118

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476
                N   E +          D ++ + K      +  +I + +S  I + ++      
Sbjct: 119 MVANRNDQGEFLGHFCFMQNISDRKLAEVKRIESEQRFQAIADCSSTLIWVADQRNQRTY 178

Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
            N    K  G  ++  + + +   +                       LE   L      
Sbjct: 179 FNAEWLKFTGRSLKREIEEGWATGIHPADVHDCLAAFALAFEEQRSVQLEYRYLNHAGHY 238

Query: 537 KLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEK 580
           + L      + LP      Y  +  DI+ +KQ  + L  A    ++
Sbjct: 239 RWLLDSGRPRFLPNGEFVGYVGSCIDITPFKQVADSLEQANYQLQE 284



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 63/157 (40%), Gaps = 8/157 (5%)

Query: 429 PQNGIEPEDVDTRINK-RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
           P      + V  ++ + ++ + +  +  S L++  +GIA ++ +G  +  NR  +   GY
Sbjct: 5   PIEEGSTDVVQRQLAEIQQQQSQQQRFYSALQSAMEGIAQLDPQGCFMEVNRTYAHDVGY 64

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
             E+++  P+   +  N   ++      +L             G+TK+  +   ++ +  
Sbjct: 65  SPEELVGLPWQTTVFANDIPILESAYNIMLDTGKISV---EARGATKQGAVFYQQLTMVA 121

Query: 548 LPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEK 580
                     +   M +IS+ K  + K   +++  + 
Sbjct: 122 NRNDQGEFLGHFCFMQNISDRKLAEVKRIESEQRFQA 158


>gi|301164155|emb|CBW23711.1| putative two-component system, sensor kinase [Bacteroides fragilis
           638R]
          Length = 543

 Score =  286 bits (733), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 97/521 (18%), Positives = 188/521 (36%), Gaps = 42/521 (8%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFF---VYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365
              ++  D+      + +D  P P     +       Y N    L +     D +     
Sbjct: 39  RKSASADDDYRRFLFDILDNLPFPIMVKDIQEQFKYTYWNKESELQSGISRKDAVG--FS 96

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
              +    +      I   ++       I   A    +  + +    +       + +  
Sbjct: 97  DVDIFGEERGKQYRKIDEDLVRAG----IPYKAEERYVTADGKVHDTLVMKSIISSGKLG 152

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLC-------SILEATSDGIAIINREGIILSTN 478
           + +       E    ++ +R++     QL          L +   G+  I+R  ++    
Sbjct: 153 KWL--LVARWEITQLKMYERELLAAKEQLEGAVRKQKLALRSIDFGLIYIDRNYLVQW-- 208

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNT------PSVMNHYLTEILSLDLRQTLEKITLGS 532
               +  G     +  + +T                      E +               
Sbjct: 209 ----EETGNIKNLVSGRHYTPGTVCYRTTGQGTQPCGKCAFREAIGTGKIVRHITHVDHV 264

Query: 533 TKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
             E     +              L   DI+E  + +  L  AK+ AE+ +  KS FLA +
Sbjct: 265 DFEITATPVYDDTGNEIIGG--LLRFEDITEKLKVERMLQEAKEKAEESNRLKSAFLANM 322

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHEIRTPL AIIGFS++I              EY   +  +  L+L +++D+LD+SKIE+
Sbjct: 323 SHEIRTPLNAIIGFSDLICQTD----DAEEKEEYIRIVTSNNELLLQLIDDILDLSKIEA 378

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712
           G M+  + P  ++E + +    +Q       + I  +   +   I  D   + Q+ +N++
Sbjct: 379 GTMDFSYAPTDINELMEDICLQMQQKNQRPEVQIMFTEKESGCVINTDRLRLSQVIMNLM 438

Query: 713 SNAIHFTPSGGQIIISTTH-TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           +NA+ FT  G  I +        +E+   V+DTG+G+   +  K  + F ++        
Sbjct: 439 NNAMKFTSEGS-ITLGYRLTRQKDELYFFVKDTGIGIPADQAGKVFERFVKLNTFI---- 493

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
           +GTGLGL + + +++   G   + +   KG       P+ +
Sbjct: 494 KGTGLGLAICRVIIERLGGTIGVETREGKGACFWFRLPVRE 534


>gi|298481290|ref|ZP_06999483.1| two-component system histidine kinase [Bacteroides sp. D22]
 gi|298272494|gb|EFI14062.1| two-component system histidine kinase [Bacteroides sp. D22]
          Length = 513

 Score =  286 bits (733), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 95/509 (18%), Positives = 177/509 (34%), Gaps = 49/509 (9%)

Query: 323 PETVDKCPIPFFVYSH-GNLFYANP-SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
            E ++  P    ++   G +   N  +F  L  + SV+D+      + L       ++  
Sbjct: 25  DELLNILPDGVIIFDTNGEVIQLNQQAFAELHVHPSVNDMLPFP-TNRLFKLLNKKEDIL 83

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
              +   R      +        +        +        ++   N             
Sbjct: 84  STILEKIRQGENTYSLPEHTFMQEQVDYTQFPIRGEFATIRDRTNLNK-ILFFFRNITVE 142

Query: 441 RINKRKMEIEVMQLCSILEATSDGI-----------AIINREGIILSTNRAVSKLFGYPV 489
              +  +   + +           I             ++             +  G P 
Sbjct: 143 LTQEYILNTALQRTR---------IYPWYYDISRSEFTLD---------DRYFEHLGIPA 184

Query: 490 ED---ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
            +   +  + +   +  +    M       LS +              +           
Sbjct: 185 GENNTLTMEEYVNMIHPDDRQPMADAFVVQLSGNTTFDKTVPFRLRRGDGTWEWFEGQST 244

Query: 547 KLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
            +   S            I E+K  +N L  A+K AE+    K  FLA +SHEIRTPL A
Sbjct: 245 YIANISGHPYRLVGICLSIQEYKDIENTLIEARKKAEESDRLKMAFLANMSHEIRTPLNA 304

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           I+GFS+VI +  +  L      ++   I  +   ++ +++D+LD+SKIES  +   F   
Sbjct: 305 IVGFSDVIGST-YDELSEEERADFVRLISINSEHLVRLIDDILDLSKIESNTIKFTFSNC 363

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
           SL+  + +     Q       I I++   +    I  D+  +KQ+  N ++NA  FT  G
Sbjct: 364 SLNSLMMDIEKE-QAMKPISEIEIKSLLPDEDVYINTDITRLKQVICNFINNARKFTQKG 422

Query: 723 GQIII--STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
             I    +  + + + V + V DTG G+    L +    F ++   +    +GTGLGL +
Sbjct: 423 -YIHFGYTLDNRNADSVQIFVEDTGSGIPQECLNEIFDRFYKVDTFK----QGTGLGLSI 477

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            K +V+   G   + S   KG+   +  P
Sbjct: 478 CKTIVEHLQGDISVKSEIGKGSCFTVTLP 506


>gi|326789810|ref|YP_004307631.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           lentocellum DSM 5427]
 gi|326540574|gb|ADZ82433.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           lentocellum DSM 5427]
          Length = 440

 Score =  286 bits (733), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 89/379 (23%), Positives = 163/379 (43%), Gaps = 11/379 (2%)

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
           +    +L + L   +D  AI+N    I+S N     + G+   ++L+K +  F++     
Sbjct: 43  QALEQELQTFLNIATDVHAILNEHLEIISCNNGFQDILGWEESEVLKKNYVEFIDYPDAV 102

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQE 567
            +   + E  +    Q    I     K+ K   +    K +     + LT  DI+  K+ 
Sbjct: 103 QIITAINECKASG--QVATNIAKCKCKDGKYKWIEWRGKYIANKKIHLLTGRDITLQKER 160

Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY---- 623
           + +    K+ AE+    K +FL  +SHE++TPL  I    ++   +    L         
Sbjct: 161 EEERLA-KREAEELEMLKDEFLINMSHELKTPLNVIYMTLQLESEEIKSALEKNGQEIEL 219

Query: 624 ---IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
                +   I R+   +L ++ +L +I+K+ES +  L+F    +   V +    V  +  
Sbjct: 220 NILKRHDKIIQRNVYRLLRLIRNLTEIAKLESDEYRLNFINCDIVSIVRQISLAVADHMQ 279

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
             ++ I             D  +++QI LN+LSN I +     ++ +S T   N +V + 
Sbjct: 280 STKVKITFDTDIQELITACDPSAIEQIMLNLLSNTIKYRKDESKVRVSLTVKDN-KVRVT 338

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V+D G+G+   ELE   K F +I  S   + EG+G GL ++K +V+ + G  +  S   K
Sbjct: 339 VKDNGIGIPKTELEYIFKRFAKIDTSLNRKCEGSGTGLTVSKYLVELHEGSIWAKSQLNK 398

Query: 801 GTLIEIIFPLYDTSHPHDC 819
           G+      P+   S   D 
Sbjct: 399 GSSFIFEIPIVQISDEKDI 417


>gi|256840060|ref|ZP_05545569.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
 gi|256738990|gb|EEU52315.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
          Length = 632

 Score =  286 bits (733), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 104/512 (20%), Positives = 199/512 (38%), Gaps = 32/512 (6%)

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
              +S   D  E +  +     P+   +Y   G L   N   + +   +S  D+      
Sbjct: 125 EEKISKMIDHNEMIFRKLYVNLPVGVELYDRDGYLIDLNAKDMEIFGIRSKKDVLGVNIF 184

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
           S  +    +         + +R + +        +      E  + +        +Q  E
Sbjct: 185 SNPIMPKDVIKKLKENKSVNFRLNYSFKKVD-DYYNTSKVGE--MDIVTKASILYDQRGE 241

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR---EGI-ILSTNRAVS 482
                 I  ++ +  I   ++         +      G A+ +    EG  I      + 
Sbjct: 242 PSSYLLINLDNTEKMIAYNRISEFENVFTLVSVYAKVGYALYDLYTFEGYAIKQWYENMG 301

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE-KLLSL 541
           +  G P+  I+      ++  N    +N +  E+          +     + +  K +  
Sbjct: 302 EKDGTPLSQIIG--IYSYIHPNDAGYINSFFEEV-KQGKAHHFRREVRVKSGDGWKWICA 358

Query: 542 RIIIKK---LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
            I        P         +DI+E K  + K    ++ AE+    KS FLA +SHEIRT
Sbjct: 359 NITRNPQSVDPNKPEMICINYDITELKDSQLK----RERAEELDRLKSAFLANMSHEIRT 414

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
           PL AI+GFS+++              E+   ID +  ++L +++D+LD++KIESG M+  
Sbjct: 415 PLNAIVGFSQLLAETD----DPEERHEFVEIIDSNNRMLLQLISDILDLAKIESGTMDFK 470

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718
           F  +S+ E ++E ++  ++   +  + +     +   +I +D   + Q+  N L+NAI +
Sbjct: 471 FADMSVKEVINEIVTSFRIKMPD-NVALIAPKDSPECQIYSDRMRLTQVISNFLNNAIKY 529

Query: 719 TPSGGQIIISTTHTS-NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
           T  G    I+  +    +E+   V DTG GM+          F +    +    +GTGLG
Sbjct: 530 TSEG---CITLAYEIIGDEIKFSVTDTGDGMSQEIQAHIFDRFYKGNTFK----QGTGLG 582

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           L + + +V+   G+  + S   KG+      P
Sbjct: 583 LSICETIVNRLGGRIGVNSELGKGSTFWFTHP 614


>gi|307155062|ref|YP_003890446.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306985290|gb|ADN17171.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 1305

 Score =  286 bits (733), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 74/254 (29%), Positives = 139/254 (54%), Gaps = 6/254 (2%)

Query: 563  EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
            +  +   +L  AK+ A+  +  KS+FLA +SHE+RTPL AI+GF++++         N +
Sbjct: 814  QQAELIEELKKAKERADAANQAKSEFLANMSHELRTPLNAILGFTQLLARD---SSLNQK 870

Query: 623  YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
              ++   I RSG  +L ++ND+L++SKIE+G++ L+     L   ++    + QL A  K
Sbjct: 871  QQDFVGIIGRSGEHLLSLLNDVLEMSKIEAGRITLNENDFDLYRLLNILEEMFQLKAQSK 930

Query: 683  RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVILR 740
             + +      ++P+ I  D   ++Q+ +N++ N I FT +G   + +  +  +++ ++  
Sbjct: 931  NLQLIFHCDPDVPQYIKTDESKLRQVLINLIGNGIKFTETGSVMLRVRVSPENSQAILFE 990

Query: 741  VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
            V DTG G+   EL+   + F Q  + ++ + EGTGLGLP+++  V+   G   + ST  K
Sbjct: 991  VEDTGPGIGTEELDILFQAFVQTVSGRKSQ-EGTGLGLPISQKFVELMGGNISVNSTLHK 1049

Query: 801  GTLIEIIFPLYDTS 814
            G+      P+  + 
Sbjct: 1050 GSTFSFEIPVTHSE 1063


>gi|304410179|ref|ZP_07391798.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183]
 gi|307302110|ref|ZP_07581868.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175]
 gi|304351588|gb|EFM15987.1| multi-sensor hybrid histidine kinase [Shewanella baltica OS183]
 gi|306914148|gb|EFN44569.1| multi-sensor hybrid histidine kinase [Shewanella baltica BA175]
          Length = 933

 Score =  286 bits (733), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 91/245 (37%), Positives = 133/245 (54%), Gaps = 8/245 (3%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  AKK A + S  KS+FLA +SHE+RTPL  +IGF+  +         +   ++Y   
Sbjct: 284 ELDLAKKRALEASRIKSEFLANMSHELRTPLNGVIGFARQLVKTPL----HSSQVDYIKT 339

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I+RS   +L I+ND+LD SK+E+GKM L   P  L E + + I+L+   A  K + +   
Sbjct: 340 IERSATNLLGIINDILDFSKLEAGKMVLENMPFGLRETIGDTITLISGSAQAKGLELVVD 399

Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVILR--VRDTG 745
            A N+P  +  D   V QI  N++ NAI FT SG   + I     S E+V+LR  V DTG
Sbjct: 400 IAPNVPDNVNGDAMRVCQIINNLVGNAIKFTDSGSVMVKIELQSQSEEQVVLRCDVVDTG 459

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+   + +   + FGQ  +S   R  GTGLGL + K +V+   G+    S+P KG+   
Sbjct: 460 IGIDESQQDFLFQAFGQADSSISRRFGGTGLGLVITKRLVNQMGGQIGFTSSPEKGSNFW 519

Query: 806 IIFPL 810
              PL
Sbjct: 520 FSLPL 524


>gi|149374705|ref|ZP_01892479.1| Signal transduction histidine kinase [Marinobacter algicola DG893]
 gi|149361408|gb|EDM49858.1| Signal transduction histidine kinase [Marinobacter algicola DG893]
          Length = 962

 Score =  286 bits (733), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 79/246 (32%), Positives = 134/246 (54%), Gaps = 12/246 (4%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  A+K A + S  KS+FLA +SHEIRTPL  IIGF+E++           +  ++ + 
Sbjct: 277 ELDFARKEALEASRIKSEFLANMSHEIRTPLNGIIGFTELLLKSPLPR----QQRDHLST 332

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I +S  ++L I+ND+LD SKIE+GK+ L   P  L + V E + ++   A+ K + +   
Sbjct: 333 IRKSSEILLTIINDILDFSKIEAGKLILDRIPFQLRDIVEEVMVMLAPAAHSKNLDLVPL 392

Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE------VILRVR 742
             N++P  I+ D   VKQ+  N+++NAI FT +G ++++  +    ++      + L + 
Sbjct: 393 VYNDVPDNIMGDPLRVKQVITNLVNNAIKFTQTG-EVVLRASLEEEDKESNRITLRLSIT 451

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D+GVG++  + +     F Q   S   +  GTGLGL ++K +V+   GK  + S   KG+
Sbjct: 452 DSGVGLSRAQQQSLFNAFSQADASTARQYGGTGLGLAISKRLVEEMGGKIGLESELGKGS 511

Query: 803 LIEIIF 808
                 
Sbjct: 512 TFWFTL 517


>gi|258516237|ref|YP_003192459.1| histidine kinase [Desulfotomaculum acetoxidans DSM 771]
 gi|257779942|gb|ACV63836.1| histidine kinase [Desulfotomaculum acetoxidans DSM 771]
          Length = 496

 Score =  286 bits (733), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 70/249 (28%), Positives = 140/249 (56%), Gaps = 3/249 (1%)

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
            ++       E+    + DF+A VSHE+RTPLT I G++E + +            +Y N
Sbjct: 251 QEIQEKITAIERLDQTRRDFVANVSHELRTPLTIIQGYTEALLDG--FAETEEERQQYLN 308

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            +      +  +VND+LD+  +ESGKM L+ + V L + +++   + + +  +K++ +  
Sbjct: 309 NVLEESQRLQRLVNDVLDLRSLESGKMVLYKQKVDLTKLLAKVAGIFKPFYAQKQVFLSL 368

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748
           S       + AD   ++Q+ +N++ NA+  TP+GG++ IS+   ++ +V + V+D+G G+
Sbjct: 369 SAEEVWEAVYADPDRLEQVFVNLIDNALRHTPAGGEVKISSALETD-KVFVTVKDSGPGI 427

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           ++ +L    + F ++  ++   GEG+GLGL + KA++DA+ G   + S P +GT++ +  
Sbjct: 428 SSKDLPLIWERFYKVDKARSRGGEGSGLGLAITKAIIDAHGGWVEVTSEPGRGTVMTVCL 487

Query: 809 PLYDTSHPH 817
           P++  +  H
Sbjct: 488 PVFRENAVH 496


>gi|242280945|ref|YP_002993074.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens DSM
           2638]
 gi|242123839|gb|ACS81535.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens DSM
           2638]
          Length = 758

 Score =  286 bits (733), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 95/554 (17%), Positives = 192/554 (34%), Gaps = 73/554 (13%)

Query: 315 FDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
            +  +      +   PI   V         N     +T Y   + I  +   S ++    
Sbjct: 69  LEARDVQLQTVLSAAPIGIGVVVDRIFQEVNDFLCEMTGYSREELIGKS---SRVVYPSD 125

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
              +   K       ++   +   R    + + +    +     +  +    +   +   
Sbjct: 126 ADFDLVSKYKYAQIREKGIGSVETRFQ--RKDGKIIHVILSS--KPLDCNDWSKGVSFTV 181

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIA---IINREGIILSTNRAVSKLFGYPVED 491
                 +  +  +   ++   +++   +       + + +  +    + +    G     
Sbjct: 182 LNITKRKEAENLLSRRIV-FENLVSNVASDFLNLSVGDIDRGLTEALKKICLFTGVGRAY 240

Query: 492 IL----RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
           I              +     +   + E+ ++DL ++   +     K E      +    
Sbjct: 241 IFLMRGNSSICDNTHEWCAENIEPQIQELQNIDLVESGSLLWETLCKRESYYIPDVSALP 300

Query: 548 LPFSSCYSLTMHDIS--------------------------------------------- 562
                   L + DI                                              
Sbjct: 301 DDLPDKAILQVQDIWSVLIEPIYFYDQLVGFVGFDSVLEHRKWSEEDIDILSLFSKNVAL 360

Query: 563 --EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
             E K+ + +L  AK  AE  +  KS+FLA +SHEIRTPL  I+G  ++++        N
Sbjct: 361 VLERKKSEERLIAAKLEAESANIAKSEFLANMSHEIRTPLNGIMGMLQLMRMGEM----N 416

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
            +  E   +   S   +  ++ D+LDI++IESG + +      L  A++   +L +  A 
Sbjct: 417 QKQEEQCGFAMESCKRLNKLLGDILDITRIESGHLQIVDAEFDLHNALNSVQALFKPAAI 476

Query: 681 EKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---- 735
           +K I +R   A N+P  ++ D+  + QI  N++ NA+ FT SG  +++            
Sbjct: 477 QKNIDLRVEIAGNVPKTMIGDINRLHQIFNNLIGNALKFTDSGF-VLVEAYLLDRNQNGS 535

Query: 736 -EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
             ++  V D+G+G+ + +L+     F QI  S+    EG GLGL + K +++   G   I
Sbjct: 536 YHILFSVSDSGIGIEDSKLDSIFNSFTQIETSRTRNYEGAGLGLAIVKQLLELMGGTLSI 595

Query: 795 FSTPAKGTLIEIIF 808
            S    GT I    
Sbjct: 596 SSEINVGTSICFSL 609



 Score = 68.1 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 67/158 (42%), Gaps = 8/158 (5%)

Query: 440 TRINKRKMEIEVMQLCSILEATSDGI-AIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
            R  K  +E   +QL ++L A   GI  +++R  I    N  + ++ GY  E+++ K  +
Sbjct: 62  QRKVKEILEARDVQLQTVLSAAPIGIGVVVDR--IFQEVNDFLCEMTGYSREELIGKS-S 118

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYS 555
             +  +          +   +  +      T    K+ K++ + +  K L  +      S
Sbjct: 119 RVVYPSDADFDLVSKYKYAQIREKGIGSVETRFQRKDGKIIHVILSSKPLDCNDWSKGVS 178

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
            T+ +I++ K+ +N LS         S+  SDFL  +S
Sbjct: 179 FTVLNITKRKEAENLLSRRIVFENLVSNVASDFL-NLS 215


>gi|218778198|ref|YP_002429516.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfatibacillum alkenivorans AK-01]
 gi|218759582|gb|ACL02048.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfatibacillum alkenivorans AK-01]
          Length = 603

 Score =  286 bits (733), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 71/373 (19%), Positives = 152/373 (40%), Gaps = 28/373 (7%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           ++ +R ++        ++ +   G+  ++  G +   N +   + G      L +     
Sbjct: 240 QVARRMLQDTSAFAKEVVTSLPVGLIAMDAAGRVAFFNHSAEIITGLSRMKTLGRDAKKI 299

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSL 556
             +         L  +L   +    E+      K + +  L +    +           +
Sbjct: 300 FSE-----HMEGLVYLLEPGI-SVTEQEIECEIKGKGVFPLSVSSSDILGEQGHYVSRIV 353

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            + D+ E +  + ++   +K+     S   +  A V+HEIR PL++I G +     +   
Sbjct: 354 ILRDLREVRDLQEQVRRQEKL-----SAIGELAAGVAHEIRNPLSSIKGLATYFSQKFDK 408

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
              +    E A  + R  + +  +V+ LLD ++      +L+  P+ ++E +  ++ LV+
Sbjct: 409 GSDDE---EIAQGMAREVDRLNRVVSQLLDFARPS----DLNLRPMDINELIPHSLKLVK 461

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
             A  + I I +         +AD   + Q  LN+  NA+     GG + + T    + +
Sbjct: 462 QDALTRNINIISQPGGKPAFAMADADRLTQCLLNLYLNAMAAMNKGGVLTVRTAVEDSGD 521

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           V + V DTG G+ + +L +   P+     S      GTGLGL +   +++ +  +  + S
Sbjct: 522 VRVEVEDTGKGIPSQDLNRIFDPYYTTKAS------GTGLGLAIVHKILEGHHARIKVES 575

Query: 797 TPAKGTLIEIIFP 809
            P +GTL+ +  P
Sbjct: 576 RPGQGTLVSMFIP 588



 Score = 44.6 bits (104), Expect = 0.062,   Method: Composition-based stats.
 Identities = 45/343 (13%), Positives = 105/343 (30%), Gaps = 15/343 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +DA G +   +       G    K +G     +      +    +  LL+   +   +  
Sbjct: 267 MDAAGRVAFFNHSAEIITGLSRMKTLGRDAKKI----FSEHMEGLVYLLEPGISVTEQEI 322

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
              I+G     P+ +++  I      +       I+   R   D +   +R + K S + 
Sbjct: 323 ECEIKGKG-VFPLSVSSSDILGEQGHYV--SRIVILRDLREVRDLQEQVRRQE-KLSAIG 378

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           E+  G +   +         +     +  +K S   E        +      +    + +
Sbjct: 379 ELAAGVAHEIRNPLSSIKGLATYF-SQKFDKGSDDEEIAQGMAREVDRLNRVVSQLLDFA 437

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
            P   +   +++N+          Q+    +   +S        A  D  + LT   ++ 
Sbjct: 438 RPSDLNLRPMDINELIPHSLKLVKQDALTRNINIISQPGGKPAFAMAD-ADRLTQCLLNL 496

Query: 329 CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST----LLDAPKLSDNNAIKPV 384
                   + G +     + +  +    V+  +   G+ +     +  P  +   +   +
Sbjct: 497 YLNAMAAMNKGGVLTV-RTAVEDSGDVRVEVEDTGKGIPSQDLNRIFDPYYTTKASGTGL 555

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
            L    +      AR+       + +L   FIP  K  Q P+ 
Sbjct: 556 GLAIVHKILEGHHARIKVESRPGQGTLVSMFIPGAKNAQDPKA 598



 Score = 39.2 bits (90), Expect = 3.1,   Method: Composition-based stats.
 Identities = 13/150 (8%), Positives = 41/150 (27%), Gaps = 13/150 (8%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
                   +      E V   P+        G + + N S  ++T    +  +       
Sbjct: 240 QVARRMLQDTSAFAKEVVTSLPVGLIAMDAAGRVAFFNHSAEIITGLSRMKTLGR--DAK 297

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
            +                L       I+ + +    +   +    ++    +   +    
Sbjct: 298 KIFSEHMEG---------LVYLLEPGISVTEQEIECEIKGKGVFPLSVSSSDILGEQGHY 348

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
           + +  I  +  + R  + ++  +  +L +I
Sbjct: 349 VSRIVILRDLREVRDLQEQVRRQ-EKLSAI 377


>gi|117919558|ref|YP_868750.1| hybrid sensory histidine kinase BarA [Shewanella sp. ANA-3]
 gi|117611890|gb|ABK47344.1| Hpt sensor hybrid histidine kinase [Shewanella sp. ANA-3]
          Length = 935

 Score =  286 bits (733), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 89/245 (36%), Positives = 135/245 (55%), Gaps = 8/245 (3%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  AKK A + S  KS+FLA +SHE+RTPL  +IGF+  +         +   ++Y N 
Sbjct: 286 ELDLAKKRALEASRIKSEFLANMSHELRTPLNGVIGFARQLVKTPL----HSSQVDYINT 341

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I+RS   +L I+ND+LD SK+E+GKM L   P  L E + E I+L+   A  K + +   
Sbjct: 342 IERSATNLLAIINDILDFSKLEAGKMVLENMPFGLRETLGETITLISGSAQAKGLELVVD 401

Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVILR--VRDTG 745
            A N+P  +  D   V QI  N++ NAI FT SG   + +   + ++++V+LR  V DTG
Sbjct: 402 IAPNVPDNVNGDAMRVCQIINNLVGNAIKFTDSGSVLVKLELQNQTDDQVVLRCDVIDTG 461

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+   + +   + FGQ  +S   R  GTGLGL + K +V+   G+    S+  KG+   
Sbjct: 462 IGIDENQQDFLFQAFGQADSSISRRFGGTGLGLVITKRLVNQMGGQIGFTSSVDKGSNFW 521

Query: 806 IIFPL 810
              PL
Sbjct: 522 FTLPL 526


>gi|307823560|ref|ZP_07653789.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
           SV96]
 gi|307735545|gb|EFO06393.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
           SV96]
          Length = 966

 Score =  286 bits (733), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 78/248 (31%), Positives = 126/248 (50%), Gaps = 14/248 (5%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L+ A+  A      KS+FL+ +SHEIRTP+ AIIG + +            +  +Y   
Sbjct: 287 ELAEARDQAIAADKSKSEFLSMMSHEIRTPMNAIIGMTRLALQTDLTA----KQQDYLTK 342

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           +  S   +L I+ND+LD SKIE+GK+ L     +LD+ +++  SL+   A EK + IR  
Sbjct: 343 VQISSRALLGIINDILDFSKIEAGKLELETIAFNLDDVLNDLFSLMSGKAEEKGLKIRFI 402

Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---------VIL 739
            A+++P  ++ D   + Q+ LN+++NA+ FT  GG + I        E         +  
Sbjct: 403 TADDVPSDLIGDPLRLGQVLLNLVNNAVKFTSRGGDVDIKVALAEGAEQVKSADQIRLEF 462

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V+DTG+G+T  ++    + F Q   S   +  GTGLGL + K MVD   G   + S   
Sbjct: 463 SVKDTGIGLTTEQIGGLFQSFNQADKSTTRKYGGTGLGLAICKRMVDMMGGVITVNSEIG 522

Query: 800 KGTLIEII 807
           +G+     
Sbjct: 523 QGSTFIFT 530


>gi|262376904|ref|ZP_06070131.1| phosphate regulon sensor kinase PhoR [Acinetobacter lwoffii SH145]
 gi|262308249|gb|EEY89385.1| phosphate regulon sensor kinase PhoR [Acinetobacter lwoffii SH145]
          Length = 452

 Score =  286 bits (733), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 82/407 (20%), Positives = 160/407 (39%), Gaps = 32/407 (7%)

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRIN--KRKMEIEVMQLCSILEATSDGIAIIN 469
            ++  P++                     +    + +M   + +  S L A  + + +++
Sbjct: 75  WISNRPYDVPPNIGGIWGALLFNVYRAQRQERIVQAEMVELIDRAQSSLVALQEAVVLLD 134

Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
               I   N A  +L G   +D  R+     L Q +     H++ E              
Sbjct: 135 ENQQIEWWNPAAERLLGISSDD-RRRNILTLLRQPSFIEYYHHIDE-------SPDGLKM 186

Query: 530 LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
             S  E+  + +++            L  +D++     +                + DF+
Sbjct: 187 RSSLFEDHYVQVKMT---RFGGESRVLVAYDVTRMHNLE--------------QMRKDFV 229

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
             +SHE+RTPLT + G+ E   +Q      NPR+    + +      +  +VNDLL +S+
Sbjct: 230 DNISHELRTPLTVLSGYIETFTDQEDI---NPRWKRAFDQMQSQTRRMNALVNDLLLLSR 286

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709
           +E+ K     + + +   +++     Q Y  +    +     ++   I +D   +     
Sbjct: 287 LENDKNIAKNQIIEMPSLMNQLFDDAQAYNIDYGHTLNLDIDSHCDLIGSD-MELASAFS 345

Query: 710 NILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
           N+++NAI +TP GG I I   H   E     V+D G+G+    L +  + F +I + +  
Sbjct: 346 NLITNAIKYTPKGGTITIGW-HDDGESAYFVVQDNGIGIDPKHLPRLTERFYRIDSDRSR 404

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           R  GTGLGL + K ++  +     I S   +G+  +++FP    S P
Sbjct: 405 RTGGTGLGLAIVKHVLMQHQAHLEIESKENQGSTFKVVFPKERLSFP 451


>gi|229137795|ref|ZP_04266397.1| hypothetical protein bcere0013_9230 [Bacillus cereus BDRD-ST26]
 gi|228645652|gb|EEL01884.1| hypothetical protein bcere0013_9230 [Bacillus cereus BDRD-ST26]
          Length = 883

 Score =  286 bits (733), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 78/338 (23%), Positives = 147/338 (43%), Gaps = 18/338 (5%)

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            +D++ +            +    +  +L      T E        + +   L++  ++L
Sbjct: 382 HQDLIHQTVDNLGLTIHSIMGRMRIQTLLHESQAMTEELQVQSEELQTQAEELQMQAEEL 441

Query: 549 PFSSCYSLTMHDISEWKQEKN-----KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
             ++    +  + +E K         +L        + S +KS+FLA +SHE+RTPL +I
Sbjct: 442 RTTNEQLESRTEEAEQKTADLQVTKLELEEKASELLRSSKYKSEFLANMSHELRTPLNSI 501

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +  SE++K      L +    E A  I  SG  +L ++ND+LD+SK+E+GK+++ FE  +
Sbjct: 502 LLLSEMLKENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIFEATN 560

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSG 722
           + +  +         A +K +      ++ IP +   D + ++QI  N+LSNA  FT  G
Sbjct: 561 ISDMAASMHQNFLHIAAQKNVEFTVEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKG 620

Query: 723 GQ------IIISTTHTS-----NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
                   +  S           + + + V+DTG+G+   + +   + F Q   +   + 
Sbjct: 621 SVSLHFDSVETSNLSHDMQSISKDWISISVKDTGIGIAKEQHQLIFEAFQQADGATIRKY 680

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            GTGLGL + K       G   + S   +G+   +  P
Sbjct: 681 GGTGLGLSICKEFARLLGGWITLESHVGEGSTFTVYIP 718


>gi|218890338|ref|YP_002439202.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           LESB58]
 gi|218770561|emb|CAW26326.1| probable sensor/response regulator hybrid [Pseudomonas aeruginosa
           LESB58]
          Length = 918

 Score =  286 bits (733), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 77/257 (29%), Positives = 133/257 (51%), Gaps = 8/257 (3%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I+  K+E  +   A + A  E+  KS FLA++SHEIRTPL  ++G  +++++        
Sbjct: 384 INALKEEGFRSRQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPLDRG-- 441

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
                Y   I  SG+ ++ ++ND+LD ++IESGK++L      L+E +S+ ++L    A 
Sbjct: 442 --QAAYVETIASSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAV 499

Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVI 738
           EKR+ +       +PR +  D   ++Q+ +N+LSNA+ FT  G   + +           
Sbjct: 500 EKRLRLHLGLDRGVPRRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVRVQRRFDEGGRER 559

Query: 739 L--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           L   V D+G+G++    +   + F Q  +S   R  G+GLGL +++ +V    G+  + S
Sbjct: 560 LLYSVSDSGIGISAQAQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSS 619

Query: 797 TPAKGTLIEIIFPLYDT 813
            P KGT   +  PL   
Sbjct: 620 EPGKGTRFSVDLPLSPA 636


>gi|229149317|ref|ZP_04277554.1| hypothetical protein bcere0011_8800 [Bacillus cereus m1550]
 gi|228634131|gb|EEK90723.1| hypothetical protein bcere0011_8800 [Bacillus cereus m1550]
          Length = 896

 Score =  286 bits (733), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 78/341 (22%), Positives = 150/341 (43%), Gaps = 24/341 (7%)

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            +D++++            +    +  +L      T E        + +   L++  ++L
Sbjct: 395 HQDLIQQTVDNLGLTIHSIMGRMRIQTLLHESQAMTEELQVQSEELQTQAEELQMQAEEL 454

Query: 549 PFSSCYSLTMHDISEWKQEK-----NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
             ++    +  + +E K        ++L        + S +KS+FLA +SHE+RTPL +I
Sbjct: 455 RTTNEQLESRTEEAEQKTADLQITKSELEEKASELLRSSKYKSEFLANMSHELRTPLNSI 514

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +  SE+++      L +    E A  I  SG  +L ++ND+LD+SK+E+GK+++ FE  +
Sbjct: 515 LLLSEMLRENHDNNLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDIIFEATN 573

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSG 722
           + +  +         A +K +      ++ IP +   D + ++QI  N+LSNA  FT  G
Sbjct: 574 ISDMAANMHQNFLHIAAQKNVEFTIEDSDTIPDLFYTDTKRIEQIIKNLLSNAFKFTEKG 633

Query: 723 GQIIISTTHTS--------------NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
               +S    S               + + + V+DTG+G+   + +   + F Q   +  
Sbjct: 634 S---VSLHFDSIETTNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGATI 690

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            +  GTGLGL + K       G   + S   +G+   +  P
Sbjct: 691 RKYGGTGLGLSICKEFARLLGGWITLESNVGEGSTFTVYIP 731


>gi|163801498|ref|ZP_02195397.1| putative two-component sensor [Vibrio sp. AND4]
 gi|159174987|gb|EDP59787.1| putative two-component sensor [Vibrio sp. AND4]
          Length = 641

 Score =  286 bits (733), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 71/258 (27%), Positives = 132/258 (51%), Gaps = 8/258 (3%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           +   ++ + ++  A+  AE  +  KS+FLA +SHEIRTP+  I+G + ++ + +     +
Sbjct: 220 VERVRERQVEIEEARDKAEVANRKKSEFLATMSHEIRTPMNGIVGIASLLNDTKL----D 275

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
            +  +  N I+ S + ++ I++D+LD SKIE+GK+ L     +L + +SE   L  + A 
Sbjct: 276 KQQKDLVNVINSSSHSLMVIIDDILDFSKIEAGKIELEVTHYNLFDLLSEVGRLHTVKAQ 335

Query: 681 EKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV-- 737
           +K + +       +P  +  D+  +KQ+  N+L+NA+ FT  G   ++ +  +    V  
Sbjct: 336 QKSLQLVCDIDPQLPLEVEGDVGRLKQVLNNLLTNAVKFTERGYVKLLVSQVSRRGRVAN 395

Query: 738 -ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
            + RV D+G+G+     +   + F Q   S   +  GTGLGL +   +++   GK  + S
Sbjct: 396 VLFRVVDSGIGIAKENQQAVFEKFQQADGSTMRKYGGTGLGLAICSRLIEVMGGKILLTS 455

Query: 797 TPAKGTLIEIIFPLYDTS 814
               G+  E   PL   S
Sbjct: 456 ELGLGSCFEFTIPLNIVS 473


>gi|73748020|ref|YP_307259.1| sensor histidine kinase [Dehalococcoides sp. CBDB1]
 gi|73659736|emb|CAI82343.1| sensor histidine kinase [Dehalococcoides sp. CBDB1]
          Length = 501

 Score =  286 bits (733), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 81/499 (16%), Positives = 187/499 (37%), Gaps = 43/499 (8%)

Query: 333 FFVY-SHGNLFYANPSFLLLTKYKSVDD----------IEIAGGLSTLLDAPKLSDNNAI 381
            F+  S G +   NP+F  L      +           +        + +         +
Sbjct: 20  VFIDCSSGLIKDCNPAFEKLVGRPLEELKKTNIWQLRPVAERSLAKKMFEEMASGGAREL 79

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
             + + R D T +    R+  I  N +  L                     I  +  + +
Sbjct: 80  AELNIERPDGTIVPIELRVKRISQNDDTFLV-------------------SIARDISEKK 120

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK-PFTVF 500
           + +  +        +I E     +AI +    I   N   +KL G+ +E++  K  +  F
Sbjct: 121 LIREALIESEKTYRAIFETAGVAMAIDDENTFIKLANSRFAKLTGFEIEELEGKKSWRQF 180

Query: 501 LEQNTPSVMNHYLTEILSLDL---RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT 557
           +     + +     E  +          E   +   K ++ + L               +
Sbjct: 181 VAPKNRAEIYGSSHERKANPEKIAPMCYEFELIDRYKNKRAILLDCTSIPGRKM--TVAS 238

Query: 558 MHDISEWKQEKNKLSHAK---KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
           + DI+++K  + +   A+   +        K++ L+ VSHE+RTPLT+I G ++ +  + 
Sbjct: 239 LLDITDFKASEEEARKARNIAETYRISEKVKAELLSVVSHELRTPLTSIKGLTDSLLRKD 298

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                N +  ++   I      +  +++DLLD +K+E   + L     ++ + +      
Sbjct: 299 VNWDDNTK-KDFLESIRSETGKLSRLIDDLLDTTKLERNLLKLKRGKGTILQVIEAIKID 357

Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
           ++    + +++      +    +  D   + Q+ LNI+ N++ ++      I  ++ +  
Sbjct: 358 MECLTEKHQVI--YDLQDGQSPLFIDKMRIGQVILNIVGNSVKYSLP-SSKIKISSKSLG 414

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
             +++ + D G G++  ++      F Q   S++ R  G GLGL + + ++ A+ G  ++
Sbjct: 415 GHLVVAISDEGRGISGKDIPYVFDYFYQDSKSEKKRNSGMGLGLAICRGIIKAHGGDIWV 474

Query: 795 FSTPAKGTLIEIIFPLYDT 813
            +    G ++    PL   
Sbjct: 475 ENAADIGAIVSFTIPLVKA 493


>gi|218780781|ref|YP_002432099.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfatibacillum alkenivorans AK-01]
 gi|218762165|gb|ACL04631.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfatibacillum alkenivorans AK-01]
          Length = 808

 Score =  286 bits (733), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 99/670 (14%), Positives = 221/670 (32%), Gaps = 72/670 (10%)

Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT---EYYAHKD 251
              +  +++F  + +       +  E             +        L    +      
Sbjct: 148 QELRTSEERFRRMTQSAPIGIFLVNEHGVTTYVNPALKSIFELEGDWDLERNKQGALPPL 207

Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTIN-LNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310
           + + T +  L    E      E     N             + + +     Y+      +
Sbjct: 208 EAISTVESWLQGVLEGEEYSHETQIWTNRGAMRWISFGATRILDQAGNVLGYVGAVEDIT 267

Query: 311 LSAYFDEGEN----LTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
                ++          E V+       V  +    + N     L  Y   ++ +     
Sbjct: 268 ALKLTEQALRDSELRYREVVENANEGIVVVQNNYPVFWNKQVSELYGYSR-EEFKGWVFD 326

Query: 367 STLLDAPKL------------SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
           S +    +                 A++   +   D            I W+   +L   
Sbjct: 327 SHIHPEDRRMVLQKQHELVESGRKAAVQAFRIISRDGNERWVEQSSIKIIWDSAPALLCF 386

Query: 415 FIPFEKANQFPENMPQN--------------------GIEPEDVDTRINKRKMEIEVMQL 454
                +     E + +                      +  E  + +  +  +      L
Sbjct: 387 QSDVSERKSAEEALQRAHDALEMEVASRTSELLAANYKLTNEIEERKRGEAALLEHEKLL 446

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY-L 513
            + +E+T+DGI +++  G I   N    +LF  P+  +  +  T  L+     + N + L
Sbjct: 447 RATIESTADGILVVDENGRITHFNSLFKELFRIPISLMAARDNTKILDHMASQIENSHNL 506

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIII-KKLPFSSCYSLTMHDISEWKQEKNKLS 572
            + +    +           K+ +++        +         +  D++  K+ +++L 
Sbjct: 507 KQTVFETFKTAQTTHGALVLKDGRVIEEYSSPLSRQKPDGGRVWSFRDVTATKELESQLI 566

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
            ++++A           A V+HEI +PL AI      IK +          I+       
Sbjct: 567 RSERLA-----ATGQLAASVAHEINSPLQAITMMLGAIKREYADDRELCSQIDLLKGAFL 621

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
           +   + D V +LLD+++    K     +  +++  +  ++ L   Y  + R+ +      
Sbjct: 622 N---IRDTVKNLLDLNRPGKEK----RQKTNINRIIEGSVGLGASYLKKSRVEVSLDLDE 674

Query: 693 NIPRILADLRSVKQIALNILSNAI--------HFTP--SGGQIIISTTHTSNEEVILRVR 742
           +IP ILA  + + Q+ LN+++NA+         + P   GG I++ T    N  ++++V 
Sbjct: 675 SIPDILASPQQMSQVVLNLVNNAVEAISANADDYGPGLKGG-IVVKTQRR-NSSLVMQVM 732

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G G+   +L K   PF       + +  G G+GL +   +++ + G   + + P  G 
Sbjct: 733 DDGPGIAPEDLNKVFDPFYT-----RKKKMGMGVGLSICLGIIEEHRGSISVANNPEGGA 787

Query: 803 LIEIIFPLYD 812
           +  I  P+ D
Sbjct: 788 IFTITLPMED 797


>gi|157373280|ref|YP_001471880.1| histidine kinase [Shewanella sediminis HAW-EB3]
 gi|157315654|gb|ABV34752.1| Histidine kinase [Shewanella sediminis HAW-EB3]
          Length = 1064

 Score =  286 bits (733), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 120/601 (19%), Positives = 214/601 (35%), Gaps = 64/601 (10%)

Query: 241 SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF 300
            +  +      D    E   L     +S            N+   KQ    L N +    
Sbjct: 101 LATLKSALKAHDRRIDEIEELFNDFHTSARANVFNRYNPNNEAWAKQRVDGLTNVTGHKL 160

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-----FVYSHGNLFYANPSFLLLTKYK 355
           E L      S         +L     D  P         V   G++      ++      
Sbjct: 161 EVLLDSLKESEIKDVGSQPDLNEVIHDDLP-GVRYYLELVDEAGDMTANLTEYISGIYEA 219

Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
               IE A      L   +  +    +  +L   +         L+ +  +    +   +
Sbjct: 220 KNAFIENAQDFEEYLTKLQPLEQKPEEIALLAEVE--------ALYKVLRDGGFEVFQRY 271

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV-MQLCSILEATSDGIAIINREGII 474
                                 ++      ++E +   +L  +L+  S     I+ E   
Sbjct: 272 N-----------------SSNKLEAITAIDELEHQTFARLERLLDDVS-----IDAE--- 306

Query: 475 LSTNRAVSKLFGYPVEDILRKP--FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
            +TN    +L G     I  +           +  +   Y +  +       L       
Sbjct: 307 RNTN---LELLGLRQMTISNQYVLIVSLFLVLSLCISIIYFSYRIITRPITKLSSTMKQL 363

Query: 533 TKEEKLLSLRIIIKKLPFSSCYSLTMHDIS---EWKQEKNKLSHAKKIAEKESSHKSDFL 589
              +  + +    ++    +         +        + +L  AK  AE  S  K+ FL
Sbjct: 364 ADGDTEVDVVYRDRQDEVGNMAQAVEVFKTNMIARNAAEQELVMAKDNAEAASKAKASFL 423

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
           A +SHEIRTP+  IIG  +++         N       N I  S   +L+I+ND+LD SK
Sbjct: 424 ATMSHEIRTPMNGIIGMIDLLLTSSL----NRDQRSMTNTIRDSSFSLLNIINDILDFSK 479

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIA 708
           IE+GK+ L     S+ E +   I  +   A+EKR+ +      NIP  I  D   ++Q+ 
Sbjct: 480 IEAGKLELESLNFSISELLESVIDTITPNADEKRVTLELYTDPNIPHHIQGDPVRIRQVL 539

Query: 709 LNILSNAIHFT---PSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFG 761
            N++ NA+ F+    S G++ I+            + + ++D G+G+   +LE+  +PF 
Sbjct: 540 FNLVGNAVKFSAVQDSRGEVRITLKKKELSNQLVFLTIEIQDNGIGIEAKQLERLFQPFT 599

Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI--IFPLYDTSHP--H 817
           Q  +S   +  GTGLGL + + +V+   GK  + ST  KG++ ++   FP  +   P  H
Sbjct: 600 QAESSTTRQFGGTGLGLAICQNLVNLMGGKIDVSSTVGKGSIFKVNLSFPYIERPSPLTH 659

Query: 818 D 818
           D
Sbjct: 660 D 660


>gi|134056909|emb|CAK37812.1| unnamed protein product [Aspergillus niger]
          Length = 1905

 Score =  286 bits (733), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 98/635 (15%), Positives = 206/635 (32%), Gaps = 96/635 (15%)

Query: 256  TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL---- 311
                P    +    P +E+  + + +           +  +           HPS     
Sbjct: 814  AASTPTSPGKFLGKPSEEEVASQDQSPAIISP---PQEIKAPPVISPTQTSRHPSTNSFY 870

Query: 312  SAYFDEGENLTPETVDKC-----PIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAG 364
            +    E      +TV +      P+  F+     G + + N  F    + +  +      
Sbjct: 871  AQLQRELPRPFTDTVAQLMLNSVPLHLFLAKPQSGEVIWTNSKFDAYRRSQPQEQKLRDP 930

Query: 365  GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
              +          ++  +         + I    R+     +        F      +  
Sbjct: 931  WQN----IHSSERDHVSQEWANALRTGSQITERVRVKRF-NDESAYRWFIFRANPLLSST 985

Query: 425  PENMPQNGIEPEDVDTRINKRKMEIEVMQL------CSILEATSDGIAIINREGIILSTN 478
             E +   G   +  +  I + K   E  +        +   +    +        ++  N
Sbjct: 986  GEVLYWIGSFLDIHEQHIAELKAAQEREKFATDAKYRAFSNSIPQIVFEATEYRGLIFVN 1045

Query: 479  RAVSKLFGYPVEDILRKPFTVFLEQNTPSV------------------------------ 508
                   G  +ED L   F   +  +                                  
Sbjct: 1046 EQWHLYTGQKLEDALNFGFAKHVHHDDLEKCGLLSLYLHESQKTGGAIDAGEAPAETTAA 1105

Query: 509  -----------MNHYLTEILSLDLRQTLEKI---------TLGSTKEEKLLSLRIIIKKL 548
                       +   L E++   +                    +K        + +  +
Sbjct: 1106 KNSQEKHLGQGVTPALEELVKRGVASVQRDENGRVFYSTELRLRSKGGDFRWHLVRLVCV 1165

Query: 549  P------FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
                     + +  T  DI++ K  + +L+ A +    +   K+ F + +SHEIRTPL  
Sbjct: 1166 ETSSFGSGEASWYGTCTDINDRKNLERELNKAMQQLNNQMESKTKFFSNMSHEIRTPLNG 1225

Query: 603  IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
            I+G    I + +             + I  S   + ++V+++LD+S++E+GKM+L     
Sbjct: 1226 ILGTIPFILDTQLDT----DQRRMLDTIQNSSTNLRELVDNILDVSRVEAGKMSLVNSWF 1281

Query: 663  SLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPS 721
             +   + + I  V   A +K + I      ++P  ++ D   ++Q+ +N++ NA+ FT  
Sbjct: 1282 HVRSVIEDVIDTVSSRAIDKGLEINYLMDVDVPPMVIGDRFRIRQVLINLVGNAVKFTAQ 1341

Query: 722  GGQIIISTTHTSNEEVILR---------VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
            G +I I  +   +    ++         V DTG G +  + E+ M+ F Q+  +   +  
Sbjct: 1342 G-EIHICCSIYHDASAQIKKTELLLNFDVVDTGKGFSARDAERLMQRFSQLGQNGSQQHA 1400

Query: 773  GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
            G+GLGL L+K +V+ + GK    S   +G      
Sbjct: 1401 GSGLGLFLSKQLVEMHGGKLTPSSKEGQGAKFSFH 1435


>gi|167462457|ref|ZP_02327546.1| two-component hybrid sensor and regulator [Paenibacillus larvae
           subsp. larvae BRL-230010]
 gi|322381877|ref|ZP_08055831.1| two-component sensor histidine kinase-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321154265|gb|EFX46587.1| two-component sensor histidine kinase-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 365

 Score =  286 bits (733), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 77/255 (30%), Positives = 132/255 (51%), Gaps = 11/255 (4%)

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
            +L  AK+ AE  +  KS+F+A +SHEIRTP+  ++  +    +            EY  
Sbjct: 115 KELLMAKEAAEAANRAKSNFIAVMSHEIRTPMNGVMAMA----DLLLETELTEEQREYTE 170

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I +SGN +L I+ND+LD +K+ES K+ L  E   L++ + E I L  +   +K +++  
Sbjct: 171 TISKSGNALLTIINDILDFTKMESSKIELEEEIFHLEQLIGECIDLFLVECRKKNLVLER 230

Query: 689 SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDT 744
               +IP+ ++ D   ++QI +N+LSNA+ FT  G    ++   +      E+  +V DT
Sbjct: 231 RINQDIPQYVVGDATRLRQILINLLSNAVKFTEKGKVSLEVKKRSEEKDGVELEFKVSDT 290

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G+   ++++  K F QI  S   +  GTGLGL + K +++   G   + S   +GT  
Sbjct: 291 GIGIPKNKMDRLFKSFSQIDFSMTRKYGGTGLGLVICKNLIELMSGTITVTSVEREGTSF 350

Query: 805 EIIF---PLYDTSHP 816
                  PL+  + P
Sbjct: 351 IFTIRLAPLHKENLP 365


>gi|313159680|gb|EFR59037.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Alistipes sp. HGB5]
          Length = 1049

 Score =  286 bits (733), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 86/529 (16%), Positives = 195/529 (36%), Gaps = 36/529 (6%)

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSV 357
           + +     R   +      E +       ++ PI   +Y    + +    +   T++  +
Sbjct: 394 QQWRIRVMRKVEAARRRESESQIKYANLFNRMPI---IYIQERVIFDEKHYPADTEFSDI 450

Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA--MTF 415
           +                         +            +  L   +          +  
Sbjct: 451 NAY-----FERTFLPRNQVVGKRGSELFADSFSEFLRLVNIVLTENRTVTYPFYYKPLDI 505

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
                 ++       +    +       ++K+++   +L   L+  +      +     +
Sbjct: 506 FFEVVLSRSYLTDHIDIFCLDGTALHKVQQKLDLINHKLSLALDVANIVPWKCDLNNRTI 565

Query: 476 ST--NR-----AVSKLFGYPVE-DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
               N+     +   +        +  + +   + +     +     ++++    +  E+
Sbjct: 566 LCDINKPVKAASGEAILQNEASLSVSDECYFSKIHKEDRDRIRQAYDDLIAGRTDKVCEE 625

Query: 528 ITLGSTKEEKLL--SLR-IIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEK 580
             + S +        +  +   +   +         T   I+E K+ + +L  A+  AE+
Sbjct: 626 YRVISNESGHWHMEWVEALAAVESFDAQGRPKTLVGTSQVITERKRMEQELLSARDRAEE 685

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            +  K+ FLA +SHEIRTPL AI+GFS ++ +            EY + I+ +  L+L +
Sbjct: 686 SNRLKTAFLANMSHEIRTPLNAIVGFSAILASTD----EEQEKQEYVSIIENNNALLLQL 741

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILAD 700
           + D+LD+SKIE+G ++       L+E + E  +++++    + + +          +  D
Sbjct: 742 IGDILDLSKIEAGTLDFIHTDFDLNELMREKENVIRMKV-REGVELLFEQKYEQCSVCTD 800

Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760
              + Q+ +N+L+NA  FT +G  I          E+   V DTG G+   + E+  + F
Sbjct: 801 RNRLSQVIINLLTNAAKFTQTGS-IRFGYEMRDR-ELYFWVSDTGSGIPADKTEQVFERF 858

Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            ++   +    +GTGLGL + K +V+   G+  + S   KG+    I P
Sbjct: 859 VKLNTFK----QGTGLGLSICKMIVEHLGGRIGVESEEGKGSKFWFILP 903


>gi|237716428|ref|ZP_04546909.1| two-component system histidine kinase [Bacteroides sp. D1]
 gi|262408028|ref|ZP_06084576.1| two-component system histidine kinase [Bacteroides sp. 2_1_22]
 gi|294645444|ref|ZP_06723147.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|294809529|ref|ZP_06768226.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
 gi|229444075|gb|EEO49866.1| two-component system histidine kinase [Bacteroides sp. D1]
 gi|262354836|gb|EEZ03928.1| two-component system histidine kinase [Bacteroides sp. 2_1_22]
 gi|292639213|gb|EFF57528.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|294443269|gb|EFG12039.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
          Length = 499

 Score =  286 bits (733), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 95/509 (18%), Positives = 177/509 (34%), Gaps = 49/509 (9%)

Query: 323 PETVDKCPIPFFVYSH-GNLFYANP-SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
            E ++  P    ++   G +   N  +F  L  + SV+D+      + L       ++  
Sbjct: 11  DELLNILPDGVIIFDTNGEVIQLNQQAFAELHVHPSVNDMLPFP-TNRLFKLLNKKEDIL 69

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
              +   R      +        +        +        ++   N             
Sbjct: 70  STILEKIRQGENTYSLPEHTFMQEQVDYTQFPIRGEFATIRDRTNLNK-ILFFFRNITVE 128

Query: 441 RINKRKMEIEVMQLCSILEATSDGI-----------AIINREGIILSTNRAVSKLFGYPV 489
              +  +   + +           I             ++             +  G P 
Sbjct: 129 LTQEYILNTALQRTR---------IYPWYYDISRSEFTLD---------DRYFEHLGIPA 170

Query: 490 ED---ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
            +   +  + +   +  +    M       LS +              +           
Sbjct: 171 GENNTLTMEEYVNMIHPDDRQPMADAFVVQLSGNTTFDKTVPFRLRRGDGTWEWFEGQST 230

Query: 547 KLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
            +   S            I E+K  +N L  A+K AE+    K  FLA +SHEIRTPL A
Sbjct: 231 YIANISGHPYRLVGICLSIQEYKDIENTLIEARKKAEESDRLKMAFLANMSHEIRTPLNA 290

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           I+GFS+VI +  +  L      ++   I  +   ++ +++D+LD+SKIES  +   F   
Sbjct: 291 IVGFSDVIGST-YDELSEEERADFVRLISINSEHLVRLIDDILDLSKIESNTIKFTFSNC 349

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
           SL+  + +     Q       I I++   +    I  D+  +KQ+  N ++NA  FT  G
Sbjct: 350 SLNSLMMDIEKE-QAMKPISEIEIKSLLPDEDVYINTDITRLKQVICNFINNARKFTQKG 408

Query: 723 GQIII--STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
             I    +  + + + V + V DTG G+    L +    F ++   +    +GTGLGL +
Sbjct: 409 -YIHFGYTLDNRNADSVQIFVEDTGSGIPQECLNEIFDRFYKVDTFK----QGTGLGLSI 463

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            K +V+   G   + S   KG+   +  P
Sbjct: 464 CKTIVEHLQGDISVKSEIGKGSCFTVTLP 492


>gi|229011902|ref|ZP_04169082.1| hypothetical protein bmyco0001_23480 [Bacillus mycoides DSM 2048]
 gi|228749316|gb|EEL99161.1| hypothetical protein bmyco0001_23480 [Bacillus mycoides DSM 2048]
          Length = 614

 Score =  286 bits (733), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 86/523 (16%), Positives = 177/523 (33%), Gaps = 41/523 (7%)

Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLL 350
            +  S      +        ++     E      +   P+    +  +G+    N    +
Sbjct: 104 FEMLSNLIIAGVKKAVQSKNTSLLSRKEEELHTILQNMPVMVDALDYNGDFVLWNRECEI 163

Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML----YRSDRTCIAASARLHTIQWN 406
           +T Y + + I     L  L            K +         + +    +  + TI W+
Sbjct: 164 VTGYTAEEIIGNPNALQLLYPDHNYRHQIQNKFLTRGKNFRDWEMSLTCKNGEIKTIMWS 223

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
                                     +  +    +  + +++ +  +L  I +A  D   
Sbjct: 224 N-----------ISEQFPVTGFSYWAVGVDITHLKTIEGQLKQQTSELELIFKALPDLCF 272

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
           +   +G I+         F  P E  + K F   L           + ++        +E
Sbjct: 273 LTEDDGTIIDYKAGSPTKFYVPAEAFMGKKFYEILPSPVAQQFQEAIRQLKEEGKNVIVE 332

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
                      +         L       + + DI+E K+ +  L+ +  +A        
Sbjct: 333 YPLTI---NGSIDFFEARCLPLLQDK-IMIIVRDITERKKAEELLNKSDTLA-----AIG 383

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
              A V+HE+R PLT I GF +         +      +Y + +      +  I+ + L 
Sbjct: 384 QLAAGVAHEVRNPLTVIKGFIQ------LFQINKEDQEKYFDLMLSEIERIEAILQEFLS 437

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706
           I+K +     ++ E  ++ +     +SL+   A    I +     +    I      +KQ
Sbjct: 438 IAKTD----EINTEKKNIYQIFKNVVSLINTKAIMTNIQVELFTDSKEIIIECSENQLKQ 493

Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
           + +NIL N+I    +GG I I         V++ V D G+G+    +++  +PF      
Sbjct: 494 VFINILQNSIEAMLNGGGISIHIKEIHKNGVVISVIDEGIGIPEERIKRLGEPFY----- 548

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
              + +GTG+GL L+  +++++ G   I S    GT + +  P
Sbjct: 549 -STKEKGTGIGLMLSYKIIESHQGTISIMSEVGVGTTVTMYLP 590


>gi|296107724|ref|YP_003619425.1| sensor histidine kinase [Legionella pneumophila 2300/99 Alcoy]
 gi|295649626|gb|ADG25473.1| sensor histidine kinase [Legionella pneumophila 2300/99 Alcoy]
          Length = 816

 Score =  286 bits (733), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 85/409 (20%), Positives = 158/409 (38%), Gaps = 56/409 (13%)

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV----- 508
             SI ++  D   +++R+  I+  + A  +      + IL K       +N         
Sbjct: 12  FKSIFDSLPDLYLLLDRDFNIVGVSDAYLQATMVNRKQILGKNVFDAFPENPNDPKATGA 71

Query: 509 --MNHYLTEILSLDLRQTLEK----ITLGSTKEEKLLSLRIII------KKLPFSSCYSL 556
             +   L  +L      T+      I   + +                            
Sbjct: 72  KNLYASLHRVLKNKSADTMAIQKYDIQRPADRGGGFEERYWSPINTPVLGAEQEVEYIIH 131

Query: 557 TMHDISEWK---------------------QEKNKLSHAKKIAEKESSH----------- 584
            + D++E+                      + + ++    +  ++ +             
Sbjct: 132 RVEDVTEFVHLKKTGSAQLKLMEELRTKAGEMEIEIYQRAQEIQEANKQLEEANKNLARL 191

Query: 585 ---KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
              K+ F A VSHE+RTPL  I+G  E++  ++  P      +     I  +  ++L  V
Sbjct: 192 DQIKTQFFANVSHELRTPLMLILGSLEMLLAEKRLPSF---VLNTLRRIQNNAQILLKHV 248

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701
           NDLL+ISK+++GKM LH+  + L + + + I+L +    E++ +      + + +   D 
Sbjct: 249 NDLLNISKLDAGKMILHYANIDLVKLIQQTIALFEAQIPERKFVFSMDLPDEL-QAQMDP 307

Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761
             ++ + +NILSNAI FTP   ++ I    T+ E   L++ D G G+     E   + F 
Sbjct: 308 DKIQHVLINILSNAIKFTPQNAKVRIRLAQTNPETCRLQIEDNGSGIPPDLCETIFERFF 367

Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           Q+         GTGLGL +AK  V+ + G     +    G +  I  PL
Sbjct: 368 QVEEPTTRTVGGTGLGLSIAKDFVELHGGSILAGNARNGGAIFTIELPL 416



 Score =  157 bits (397), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 96/232 (41%), Gaps = 12/232 (5%)

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
           +K       F+   SH+++ PL A+      I  +  G + + +  +Y   + +  + + 
Sbjct: 587 KKAEDELDQFVYHASHDLKAPLPAMEHLISWI-EEDLGEMLSEQSKKYLLLLRQRASRMS 645

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
            +++ LL  +  +SG +      +  D  +++ I  +          +     + +P + 
Sbjct: 646 KLLDGLLKYA--QSGYVFDKVRTIHTDRLITDIIKKLNP-----PQTVTFQLEDTLPVLN 698

Query: 699 ADLRSVKQIALNILSNAIHFTP-SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757
                ++++   +L N+I       G III T    +      V D G G+     ++  
Sbjct: 699 TCELPLREVFTALLDNSIRHHHRKDGHIIIGTK-EKDRFYEFFVADDGPGIEKKYQDRIF 757

Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           + F  +    ++    +G+GL +AK +V+   GK  + S   KG++   ++P
Sbjct: 758 QLFQTLQPRDKLET--SGVGLSIAKKIVEFQGGKISVESEKNKGSVFRFLWP 807


>gi|239628563|ref|ZP_04671594.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239518709|gb|EEQ58575.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 838

 Score =  286 bits (733), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 84/387 (21%), Positives = 169/387 (43%), Gaps = 12/387 (3%)

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI-ILSTNRAVSKLFGY 487
                    +  R     +      L  +++  ++   + NR    +   +  +  + G+
Sbjct: 299 GFIFFRLNQIADRKRDADVYNRERMLNLLIDRGNEVYMMYNRTKRCLEYVSPNLESVMGW 358

Query: 488 PVEDILRK-PFTVFLEQNTPSVMNHYLTEILSLDL-RQTLEKITLGSTKEEKLLSLRIII 545
             ++  +        + +  + +   L           ++ +    +T + + + L++  
Sbjct: 359 SRQEAEQLFSEGGDGDADDIAGIKDELANWDRQGDFVGSIHRHLNRNTGDLRRIRLQVNP 418

Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
             L     +   + D+++  +++  L  A   A   +  KS+FL+ +SH+IRTP+ AI+G
Sbjct: 419 VHLDSEEVWIANLSDMTKEWEQREDLEQALIAANSANIAKSNFLSNMSHDIRTPMNAILG 478

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
            +++ K     P    +       I  S   +L +++++LD+S+IESGKM L     SL 
Sbjct: 479 MADIAKQYAANP---EKVTSCMEKISYSSKHLLSLIDEVLDMSRIESGKMLLDNTAFSLS 535

Query: 666 EAVSEAISLVQLYANEKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724
             +   +S+ Q    EK++       +     ++ D   + +I +NILSNAI +TP  G+
Sbjct: 536 CMLEGIVSMFQAPIKEKKLTFHMEKNHIENDSLIGDEFRLSRILVNILSNAIKYTPEQGE 595

Query: 725 IIISTTHTSNE-----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
           I  S   +  +          ++DTG GMT   L+    PF ++        +GTGLG+ 
Sbjct: 596 ISFSIAESQPDKEGYARYRFIIKDTGRGMTEEFLKTIFLPFTRMEEKDGNHTQGTGLGMA 655

Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEI 806
           +AK+M+D   G  ++ S P KG+   +
Sbjct: 656 IAKSMLDLMGGSIHVESAPGKGSTFTV 682


>gi|308272911|emb|CBX29515.1| hypothetical protein N47_J04960 [uncultured Desulfobacterium sp.]
          Length = 616

 Score =  286 bits (733), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 87/399 (21%), Positives = 163/399 (40%), Gaps = 29/399 (7%)

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476
                     N     +     + RI+  ++     +   + +A    IA+++ +G +  
Sbjct: 233 DEIGRLSESFNEMAAVLRQIRKEERISLLRIRRATEE---VFKALPTAIALLDLKGRVEI 289

Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
           +     + FG             +L       +N     I+  D +    +  +     E
Sbjct: 290 STETADRHFGLKQGVFAEMLGYEWLNPLIQRALNE--NRIIEHDSKHGYIQQFI--DNRE 345

Query: 537 KLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
                 ++   +          +L + D+++                ++   KS  ++ V
Sbjct: 346 YFFQPTVVPIPVVPEGKELTGVALILKDVTQ--------------MYEQQELKSGMISTV 391

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SH+++TPLT++     ++  +  G L N + IE           +L+I+NDLLD++ IES
Sbjct: 392 SHQLKTPLTSLRMSIYLLLEESVGVL-NEKQIELLIAARDDSERLLNIINDLLDLNCIES 450

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712
           GK ++  +PVS    V + I      A +K + +  +  +++P ++AD   ++ +  N+L
Sbjct: 451 GKSDVSLKPVSPQTLVRDVIDSFLPEARDKGVTMANAVPDDLPEVVADAEKIRHVFTNLL 510

Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           SNAI FT  GG + +      +  V   V DTG G+T   L+   +PF + P   +    
Sbjct: 511 SNAIRFTSPGGSVSVLADLEPDN-VRFSVEDTGAGITAEHLKHLFEPFYRAPGQDEKS-- 567

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
           G GLGL + K ++ A+ G     S   KGT      PL 
Sbjct: 568 GVGLGLAIVKEIIQAHGGDVSAESEIGKGTSFGFTLPLA 606


>gi|264678720|ref|YP_003278627.1| periplasmic sensor hybrid histidine kinase [Comamonas testosteroni
           CNB-2]
 gi|262209233|gb|ACY33331.1| periplasmic sensor hybrid histidine kinase [Comamonas testosteroni
           CNB-2]
          Length = 924

 Score =  286 bits (733), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 111/618 (17%), Positives = 213/618 (34%), Gaps = 64/618 (10%)

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP-PHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
           D+        +  + S+E     +    +   P        + LT+  A +   ++    
Sbjct: 107 DRADVKQARARIIYLSLEHSTAKLLGADTAAKPSPVSPGTTAWLTKALAERAPAIEAGNR 166

Query: 260 PLLTSEESSLPEQED-FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
             +        E +  F    L+    ++ +  L+ +   S       +     A +D  
Sbjct: 167 AAIVWLRPPTDEMDRIFLFTPLDAAHPEESWIGLEVDGVASVIASECASDGGSYALYDSN 226

Query: 319 ENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
             +   T+   P+P    +  G L   +  F                    L+    + +
Sbjct: 227 SRM---TLHGGPLPMMGNTVSGRLAQDSFGFQ-----------GGRWLPENLVLVKSVGE 272

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
                   +           AR     W       +       A +  +           
Sbjct: 273 AQWKLVYYV-----PMRDVLARSARSFWMAGGVAVVLAAIVLLAVRHIKRKLVAPAL--- 324

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRKP 496
                    +   +     I+E    G++++ R +G +L +N A  +L            
Sbjct: 325 ----RQYAALVDSLALNNKIIEVAPVGLSLVRRADGRLLVSNDAARRLL----------- 369

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556
                           + +  +    +  E       ++ + + L               
Sbjct: 370 -------EEHDSWREDIRQATTQAGSRECEL------RDGRSIILTFASMPYQSEDVVIC 416

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            + DI+  K+ +  L  AK  A++ +  K+ F A +SHEIRTPL  I+G  E++      
Sbjct: 417 GISDITVQKEVERSLRSAKLAADQVNEAKTMFFATLSHEIRTPLYGIVGTMELLALTGL- 475

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
              N +  +Y N I +S   +L  +ND LD+S+IE+G+  L+   VS  E +   ++   
Sbjct: 476 ---NVQQQQYLNTIQQSSATLLRTINDTLDLSRIEAGRQELYIAEVSPAELLERVVANFA 532

Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSN 734
             A+ K +LI       +P  + AD   + Q+  N++ NA+ FT +G   + +S  +   
Sbjct: 533 ARAHGKGLLIYGLCDLGVPSSVRADSARILQVLNNLVGNAVKFTEAGRVAVRVSAENLQP 592

Query: 735 EEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
             V LR  V DTGVG+      +  +P+ +   S +    G+GLGL + + + D   G  
Sbjct: 593 GRVRLRFQVADTGVGIRAEAQAQLFEPYFRADASAKEDISGSGLGLAICRRLSDLMGGSL 652

Query: 793 YIFSTPAKGT--LIEIIF 808
            + S    GT     +  
Sbjct: 653 SVVSEKGLGTSITFAVTL 670


>gi|326794409|ref|YP_004312229.1| multi-sensor hybrid histidine kinase [Marinomonas mediterranea
           MMB-1]
 gi|326545173|gb|ADZ90393.1| multi-sensor hybrid histidine kinase [Marinomonas mediterranea
           MMB-1]
          Length = 939

 Score =  286 bits (733), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 74/259 (28%), Positives = 133/259 (51%), Gaps = 11/259 (4%)

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
              ++   +++  +L  A K A + +  KS FLA +SHEIRTPL AI+G+ ++++  +  
Sbjct: 264 IRRNMDSLEEKSAQLHIANKEATESNRLKSQFLANISHEIRTPLNAIMGYIQILQKDQL- 322

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
              + +   Y + I +S   +L I++D+LD SKIE+GK++L    +++ + V E   ++ 
Sbjct: 323 ---DKQQRLYMDTIAQSTTNLLTIISDILDFSKIEAGKLSLDLTDINIRDIVDEVYQILS 379

Query: 677 ---LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG---QIIIST 729
              L    K + +   F  ++P  ++ D   ++Q+  N++ NAI FT  G     + I  
Sbjct: 380 SANLVNASKELDLIPEFDLDVPTWVIGDPVRIRQVLTNLIGNAIKFTHEGSVRTTVKILE 439

Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
              S+ ++  ++ DTGVG+   +L+   KPF Q+  S   +  GTGLGL + K +V    
Sbjct: 440 KSNSSLKLSFQIIDTGVGIPENKLDNLFKPFSQVDTSTTRKFGGTGLGLVITKKLVKQMG 499

Query: 790 GKFYIFSTPAKGTLIEIIF 808
           G   + S    G+      
Sbjct: 500 GNVEVSSEHGIGSNFRFTI 518


>gi|242238298|ref|YP_002986479.1| hybrid sensory histidine kinase BarA [Dickeya dadantii Ech703]
 gi|242130355|gb|ACS84657.1| Hpt sensor hybrid histidine kinase [Dickeya dadantii Ech703]
          Length = 918

 Score =  286 bits (733), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 86/333 (25%), Positives = 147/333 (44%), Gaps = 17/333 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           L  Y +   +  P    +       ++      L   +   +             +++ +
Sbjct: 188 LLAYRLMRDVTIPIRNMV-----ETVDRIRRGQLDSRVEGRMLGELDMLKNGINSMAMSL 242

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                          +D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 243 TAYHEEMQQNIDQATYDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTP 302

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+         P       +Y   I+RS N +L+I+ND+LD SK+E+GK+ L  
Sbjct: 303 LNGVIGFTRQTLKTPLTPT----QQDYLQTIERSANNLLNIINDVLDFSKLEAGKLVLEN 358

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P SL   + E + L+   A+EK + +  +  +++P   + D   ++QI  N+L NAI F
Sbjct: 359 IPFSLHNTLDEVVMLLAHTAHEKGLELTLNIQHDVPEQFIGDPLRLQQIITNLLGNAIKF 418

Query: 719 TPSGGQ-IIISTTHTSNEEV--ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T  G   I I        +V   ++++DTG+G+   +  +  + F Q   S   R  GTG
Sbjct: 419 TEQGNIDIRIEKRKQEQHQVLLEIQIKDTGIGIAEIQQAQLFQAFRQADTSISRRHGGTG 478

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           LGL + + +V    G     S   +GT      
Sbjct: 479 LGLVITQKLVREMGGDISFHSKLNQGTTFWCTL 511


>gi|224543643|ref|ZP_03684182.1| hypothetical protein CATMIT_02853 [Catenibacterium mitsuokai DSM
           15897]
 gi|224523416|gb|EEF92521.1| hypothetical protein CATMIT_02853 [Catenibacterium mitsuokai DSM
           15897]
          Length = 529

 Score =  286 bits (733), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 76/370 (20%), Positives = 152/370 (41%), Gaps = 39/370 (10%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           R + R+   E  ++ +IL    +G  +++  G+ILS N +  K+ G         P    
Sbjct: 195 RKSMRETRFEQDKINAILRKMEEGFILLDENGMILSVNDSAIKILG---------PLKEK 245

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
                     + +  + S   +Q +E               +  I +LPF    +L   D
Sbjct: 246 DNLVDHISYPNLINALNSASKKQRIELKI-------HDFDYQCAISRLPF--GTALFFVD 296

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I+  K                   + +F + VSHE++TP+TAI G+SE++     G + +
Sbjct: 297 ITAMKN--------------SQKMREEFFSSVSHELKTPITAIRGYSELLSQ---GFIND 339

Query: 621 PRYIEY-ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
               +   + I      +  ++ND+L +S+++S  + +   PV +   + +     +   
Sbjct: 340 ENQKKMMLSKIQTEVTNMSSLINDILMLSRLDSDDLIVEKVPVKMQALMKDISQDYEGLL 399

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
            +  + + T         + +   ++ +  N++SNAI +    G + +      +    +
Sbjct: 400 LKYNVELHTDVDP--ITYIGNGSQIETLISNLVSNAIKYNKEDGHVYVHIYSKEDNMF-I 456

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V+DTG+G+   +  +  + F ++   +     GTGLGL + K +V  N G   + S   
Sbjct: 457 EVKDTGIGIPLADQGRVFERFYRVDKGRSRIKGGTGLGLAIVKHIVSYNKGTVKLHSQLG 516

Query: 800 KGTLIEIIFP 809
           +GT I I  P
Sbjct: 517 EGTCITITLP 526


>gi|171060879|ref|YP_001793228.1| PAS/PAC sensor signal transduction histidine kinase [Leptothrix
           cholodnii SP-6]
 gi|170778324|gb|ACB36463.1| PAS/PAC sensor signal transduction histidine kinase [Leptothrix
           cholodnii SP-6]
          Length = 757

 Score =  286 bits (733), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 111/679 (16%), Positives = 223/679 (32%), Gaps = 75/679 (11%)

Query: 182 GIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS 241
           G+V   R D    A  + L    + L        SV    Y +      P   R+  ++ 
Sbjct: 98  GVVRAPRDDAPDVAPPRWLRDSVAALLYDTNLPISVGGHDYGVLRLSFAPD--RIAGRLW 155

Query: 242 SLTEYYAHKDDVLKTEKYPLLT-SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF 300
             T        V       L+       L +       +    + +     L        
Sbjct: 156 EQTRIALALGLVCVIGGLALIRFPLVRWLGKLSRVQAFDEAMRSGRAAPAMLSAEEAPLE 215

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDD 359
              +       +A           T+       F     G +  ANP+   +        
Sbjct: 216 FRETFEVLGRAAASLQSQRAQAAVTLGAIADGVFTLDGEGRVVLANPAACAMAGRTLEQM 275

Query: 360 IEIAGG--LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS--LAMTF 415
                   L  +            + V L    +  +     L  I           +  
Sbjct: 276 FGRPAAEVLPQVYADASHLGRWTGRRVTLRCDTQPDVVVDTTLSPILSPDGAVAGHVLAC 335

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINK------------------------------- 444
               + +   + +       E     + +                               
Sbjct: 336 RDISEQSALDQRLRAELRARESALVALRQVLEGLTPGAQASARTVGSDDLAAISLMISEL 395

Query: 445 -RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR---KPFTVF 500
             +++I   QL +I   + DG    + +  +   + A ++L G P    L    +     
Sbjct: 396 VTRLQIRGEQLDAIFALSPDGFVSFDSQRRVNYVSPAFTRLTGMPESQALGADERDIEAQ 455

Query: 501 LE-----QNTPSVMNHYLTEILSLDLRQTLEKITL-GSTKEEKLLSLRIIIKKLPFSSCY 554
           L             +    ++   D      +  +  +    ++L + +        S  
Sbjct: 456 LRAQCDSPIPWRGFDAMRHDLRPRDDASVPGRELIETARPARRVLEVGLREGHTEAIS-Q 514

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
            L++ D++  ++                  KS+FL+  +HE+RTP+ +I GF+E++  ++
Sbjct: 515 VLSLRDVTHEREV--------------DQMKSEFLSTAAHELRTPMASIFGFAELMLRRK 560

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES-GKMNLHFEPVSLDEAVSEAIS 673
                  + ++    I R   L++ I+N+LLD+++IE+ G  +   E + L   + E + 
Sbjct: 561 LSA---EKQLDVLTTIHRQSQLMISIINELLDLARIEARGGKDFVLETLDLALLLREVLH 617

Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
             +   +    L           +L D   ++Q   N+LSNA  ++P GG +++     +
Sbjct: 618 DFKPPQDRALPLFERRLEP--VPVLVDRNKMRQAIGNVLSNAYKYSPHGGDVVVRIVAGT 675

Query: 734 NEEV---ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
           +  V    + VRD G+GMT  +L +  + F +   S  I   GTGLG+ + K +++   G
Sbjct: 676 DPAVPMIGIEVRDHGIGMTAAQLARVSERFYRADTSGSIA--GTGLGMSIVKEIIELLGG 733

Query: 791 KFYIFSTPAKGTLIEIIFP 809
           +  + S PA+GT + +  P
Sbjct: 734 RIALASEPAQGTTVTLWLP 752



 Score = 65.4 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 29/251 (11%), Positives = 68/251 (27%), Gaps = 17/251 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + +D  G +   +       G    +M G    +V   ++ D ++           W G
Sbjct: 248 VFTLDGEGRVVLANPAACAMAGRTLEQMFGRPAAEVLPQVYADASHL--------GRWTG 299

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND----PRALGKRLD 201
           +      + T   V +D    PI S +   +G             +      RA  +  +
Sbjct: 300 RRVTLRCD-TQPDVVVDTTLSPILSPDGAVAGH--VLACRDISEQSALDQRLRAELRARE 356

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
                L ++ +G +   +                M +++ +  +    + D +       
Sbjct: 357 SALVALRQVLEGLTPGAQASARTVGSDDLAAISLMISELVTRLQIRGEQLDAIFALSPDG 416

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
             S +S              + T       L  + ++    L  +    +     +    
Sbjct: 417 FVSFDSQRRVNYVSPAF--TRLTGMPESQALGADERDIEAQLRAQCDSPIPWRGFDAMRH 474

Query: 322 TPETVDKCPIP 332
                D   +P
Sbjct: 475 DLRPRDDASVP 485


>gi|22086084|gb|AAM90591.1|AF398464_1 protein kinase PpoS [Marinomonas mediterranea MMB-1]
          Length = 939

 Score =  286 bits (733), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 74/259 (28%), Positives = 133/259 (51%), Gaps = 11/259 (4%)

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
              ++   +++  +L  A K A + +  KS FLA +SHEIRTPL AI+G+ ++++  +  
Sbjct: 264 IRRNMDSLEEKSAQLHIANKEATESNRLKSQFLANISHEIRTPLNAIMGYIQILQKDQL- 322

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
              + +   Y + I +S   +L I++D+LD SKIE+GK++L    +++ + V E   ++ 
Sbjct: 323 ---DKQQRLYMDTIAQSTTNLLTIISDILDFSKIEAGKLSLDLTDINIRDIVDEVYQILS 379

Query: 677 ---LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG---QIIIST 729
              L    K + +   F  ++P  ++ D   ++Q+  N++ NAI FT  G     + I  
Sbjct: 380 SANLVNASKELDLIPEFDLDVPTWVIGDPVRIRQVLTNLIGNAIKFTHEGSVRTTVKILE 439

Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
              S+ ++  ++ DTGVG+   +L+   KPF Q+  S   +  GTGLGL + K +V    
Sbjct: 440 KSNSSLKLSFQIIDTGVGIPENKLDNLFKPFSQVDTSTTRKFGGTGLGLVITKKLVKQMG 499

Query: 790 GKFYIFSTPAKGTLIEIIF 808
           G   + S    G+      
Sbjct: 500 GNVEVSSEHGIGSNFRFTI 518


>gi|327194434|gb|EGE61294.1| serine/threonine kinase protein [Rhizobium etli CNPAF512]
          Length = 1982

 Score =  286 bits (733), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 90/648 (13%), Positives = 222/648 (34%), Gaps = 42/648 (6%)

Query: 183  IVHVNRVDNDPRALGKRLDKK------FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM 236
            ++ +             L +              +     +  E       +S   ++  
Sbjct: 1352 VLRMAVEQAGAERGLLILSRGGEPRIAAEATIRGEAVLIELRNEALAGVMPESVLNYVLR 1411

Query: 237  KNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS 296
              ++ SL +  A                    LP       I                  
Sbjct: 1412 MREIVSLDDASAENAFAADPYIRHRAARSILCLPLINHAKLIGALYLENTLTGRVFAPGR 1471

Query: 297  KESFEYLSHRNHPSLS-----AYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLL 350
                + ++ +   +L          E E      V+   I  F+    G +  AN +FL 
Sbjct: 1472 IPVLKLIASQAASTLEITGLYRDLAEREARIGRLVEANIIGIFIRDIGGRIIEANEAFLQ 1531

Query: 351  LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
            +  Y   + +     L   L  P+  + +A     L     +           +    + 
Sbjct: 1532 MVGYSRDELLAGQL-LDKELTPPEWRERDAEAEAELR-VTGSVRPFEKVYQ--RKGGGHV 1587

Query: 411  LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470
              M      +A+             +  +++  + ++     +  + ++  +D   +   
Sbjct: 1588 PVM----IGEASFEGAGSQAVAFVLDLSESKRAEERLRASETRFRTFVDHATDAFFLHTD 1643

Query: 471  EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530
            +  ++  NR   +  GY  E+++      F        +   +  + +    Q +   T+
Sbjct: 1644 DLTVIDVNRQACESLGYSREELIGMHPRDFDGAIDEKSLATLVDRVDAG---QPMTFETV 1700

Query: 531  GSTKEEKLLSLRIIIKKLPFSSCYSL--TMHDISEWKQEKNKLSHAKKIAEKESSH--KS 586
               K+     + + + K      +       DI++ +Q ++ +  A+      S      
Sbjct: 1701 HRRKDGTTFPVEVRVGKFKQEEQWFRLSLARDITDRRQAQDAIQLARAELAHVSRLTTMG 1760

Query: 587  DFLARVSHEIRTPLTAIIGF-SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
            + +A ++HE+R PLT ++   +  ++     P            +        ++++ + 
Sbjct: 1761 ELVASIAHEVRQPLTGLVSSGNACLRYLDADPRDIVSARRAIERMISDAFRASEVIDRIR 1820

Query: 646  DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
             ++K    K     + ++++  VSE I+LV        + +RT+ ++ +P I+ D   ++
Sbjct: 1821 AMAK----KSPERRDRLNINNIVSETIALVSTDLERSAVSLRTNLSHGLPPIVGDQVQIQ 1876

Query: 706  QIALNILSN---AIHFTPSGGQ-IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761
            Q+ LN++ N   A+   P G + +I+ST   ++  V++ VRD+G  +   ++    + F 
Sbjct: 1877 QVILNLIMNANDAMAAMPKGARELIVSTEKAASNTVLVAVRDSGPILDPAKIGDIFEAFF 1936

Query: 762  QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
                      +G G+GL +++++V+A+ G+ +       G + +   P
Sbjct: 1937 STKP------KGMGMGLTISRSIVEAHKGQLWATPNVPHGAIFQFTLP 1978



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/325 (8%), Positives = 83/325 (25%), Gaps = 29/325 (8%)

Query: 90   DAHGYLKEISEELPKTIGNYAFKMIGMRLCD--VSDILHIDPNNHIGDLLKRQNTWYGKT 147
            D  G + E +E   + +G    +++  +L D  ++     + +      L+   +     
Sbjct: 1517 DIGGRIIEANEAFLQMVGYSRDELLAGQLLDKELTPPEWRERDAEAEAELRVTGSVRPFE 1576

Query: 148  TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
             ++  +G   +VP+      I   + E +G +    V             +  + +F   
Sbjct: 1577 KVYQRKGGG-HVPVM-----IGEASFEGAGSQAVAFVLDLSESKRAEERLRASETRFRTF 1630

Query: 208  HEIKKGHSSV--EKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK--DDVLKTEKYPLLT 263
             +       +  +       ++Q+       + ++  +         D+         + 
Sbjct: 1631 VDHATDAFFLHTDDLTVIDVNRQACESLGYSREELIGMHPRDFDGAIDEKSLATLVDRVD 1690

Query: 264  SEES-------------SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310
            + +              + P +         +   +    +L  +  +  +         
Sbjct: 1691 AGQPMTFETVHRRKDGTTFPVEVRVGKFKQEEQWFRL---SLARDITDRRQAQDAIQLAR 1747

Query: 311  LSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
                         E V            G +   N + L        D +     +  ++
Sbjct: 1748 AELAHVSRLTTMGELVASIAHEVRQPLTGLVSSGN-ACLRYLDADPRDIVSARRAIERMI 1806

Query: 371  DAPKLSDNNAIKPVMLYRSDRTCIA 395
                 +     +   + +       
Sbjct: 1807 SDAFRASEVIDRIRAMAKKSPERRD 1831



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 40/290 (13%), Positives = 86/290 (29%), Gaps = 13/290 (4%)

Query: 69   DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID 128
             SE  F       T  F  + D    + +++ +  +++G    ++IGM   D    +   
Sbjct: 1622 ASETRFRTFVDHATDAFFLHTD-DLTVIDVNRQACESLGYSREELIGMHPRDFDGAIDEK 1680

Query: 129  PNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNR 188
                + D +        +T     +GT   V + +          +F     +  + + R
Sbjct: 1681 SLATLVDRVDAGQPMTFETVHRRKDGTTFPVEVRV---------GKFKQEEQWFRLSLAR 1731

Query: 189  VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA 248
               D R     +    + L  + +  +  E         + P   L              
Sbjct: 1732 DITDRRQAQDAIQLARAELAHVSRLTTMGELVASIAHEVRQPLTGLVSSGNACLRYLDAD 1791

Query: 249  HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
             +D V        + S+     E  D       +  +++    + N   E+   +S    
Sbjct: 1792 PRDIVSARRAIERMISDAFRASEVIDRIRAMAKKSPERRDRLNINNIVSETIALVSTDLE 1851

Query: 309  PSLSAYFDEGENLTPETV-DKCPIPFFVYSHGNLFYANPSFLLLTKYKSV 357
             S  +      +  P  V D+  I   + +   +  AN +   + K    
Sbjct: 1852 RSAVSLRTNLSHGLPPIVGDQVQIQQVILNL--IMNANDAMAAMPKGARE 1899


>gi|300936299|ref|ZP_07151231.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 21-1]
 gi|300458551|gb|EFK22044.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 21-1]
          Length = 918

 Score =  286 bits (733), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 85/333 (25%), Positives = 153/333 (45%), Gaps = 17/333 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +FG+ +   +  P    +               L   +   +             +++ +
Sbjct: 193 IFGWRLMRDVTGPIRNMVNTVDR-----IRRGQLDSRVEGFMLGELDMLKNGINSMAMSL 247

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 248 AAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTP 307

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+ +       P       ++ N I+RS N +L I+ND+LD SK+E+GK+ L  
Sbjct: 308 LNGVIGFTRLTLKTELTPT----QRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILES 363

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P  L   + E ++L+   +++K + +  +  +++P  ++ D   ++QI  N++ NAI F
Sbjct: 364 IPFPLRSTLDEVVTLLAHSSHDKGLKLTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKF 423

Query: 719 TPSGGQ-IIISTTHTSNEEVILRV--RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T +G   I++     SN +V + V  RDTG+G+   +  +  + F Q   S   R  GTG
Sbjct: 424 TENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTG 483

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           LGL + + +V+   G     S P +G+      
Sbjct: 484 LGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516


>gi|149278244|ref|ZP_01884382.1| two-component hybrid sensor and regulator [Pedobacter sp. BAL39]
 gi|149231010|gb|EDM36391.1| two-component hybrid sensor and regulator [Pedobacter sp. BAL39]
          Length = 1198

 Score =  286 bits (733), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 74/251 (29%), Positives = 130/251 (51%), Gaps = 5/251 (1%)

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           ++    +    +  E+ + +KS+FLA +SHE+RTPL +I+  S+++   +     +  YI
Sbjct: 511 QERNQDIQQKAEQLEQSTKYKSEFLANMSHELRTPLNSILLLSKLMSENKD---LDKEYI 567

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           EYA  I  SG  +L +++++LD+SKIE+GKM L F  V++DE  ++  S+    A  K++
Sbjct: 568 EYAEVIQSSGQGLLGLIDEILDLSKIEAGKMKLEFASVNIDEVSTDMRSMFSPLAKNKQL 627

Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-VILRVRD 743
                    IP +  D   ++QI  N+LSNAI FT  G ++ ++     + + V   V D
Sbjct: 628 QFAVEVEERIPEVETDKMRLEQILKNLLSNAIKFTTQG-KVSLTVKKDDSGKFVQFTVTD 686

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TG+G+   +     + F Q   S + +  GTGLGL +++ +     G+  + S    G+ 
Sbjct: 687 TGIGIATDKQGLIFEAFQQADGSTRRKFGGTGLGLSISRELAKILGGEIELTSKENVGSS 746

Query: 804 IEIIFPLYDTS 814
                P+    
Sbjct: 747 FTFSLPVRRVD 757


>gi|288942215|ref|YP_003444455.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
 gi|288897587|gb|ADC63423.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
          Length = 758

 Score =  286 bits (733), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 107/518 (20%), Positives = 194/518 (37%), Gaps = 33/518 (6%)

Query: 316 DEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST-LLDAPK 374
              ++     VD  P                 +  +    S         L   +L    
Sbjct: 8   PPSQDALILIVDDDPPAI---DALRRILRRGRYTNVLGCSSAAASLDVIALQRPMLVLLD 64

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
           L         +L    R  +   A    I    E+            +   + + +    
Sbjct: 65  LHMPVMDGFAVLAHIQREYLPEEAPTVLILTASEDR---ASRLRALESGARDYLLKPYDP 121

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
            E +    N   ++ +   L ++L++T   +   +  G     NR+   L GY   +   
Sbjct: 122 YEVLLRVRNLLAIQRQGRMLANVLDSTPFAMLAHDAAGHCTYINRSALNLLGYERTEA-- 179

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--- 551
                 + Q+  ++++ + ++  +                +  +L +R     L      
Sbjct: 180 -----IIGQDVRAILHDHTSDSATPGETGPSGSERWCRRADGTMLPVRYWSYPLSGERST 234

Query: 552 SCYSLTMHDISEWKQEK-------NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
               +T+ D SE  + +        KL  A + A++ +  KS F+A +SHEIRTPLTAI 
Sbjct: 235 GESLVTLLDQSEHHESERRARLAAEKLETALRQADEANLAKSRFVANMSHEIRTPLTAIT 294

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           GF+E +      P    R     N I R+   ++++VN++LD S+IESGK+ +       
Sbjct: 295 GFAETLTESDQPPEECERA---VNAIIRNSRYLMELVNNILDFSRIESGKLLVEQIETPF 351

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG 723
           +  + E  +     A  K +    S     PR ++ D    KQI +N+L+NA  FT  G 
Sbjct: 352 ETWIREIAAFAIERARGKGLHFDLSVEAPWPRTLVTDPTRAKQILVNLLNNAFKFTEQGS 411

Query: 724 QIIISTTHTSNEE-VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
            + +        E ++L V DTG+G+ ++  E+  + F Q   S   +  G+GLGL +A+
Sbjct: 412 -VRLHVVLDPEHERLVLEVTDTGIGIESHRQEELFEAFVQADASTMRQHGGSGLGLNIAR 470

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIF---PLYDTSHPH 817
            +     G+  + S    G+         P+      H
Sbjct: 471 TLARCLGGELSVRSVFGVGSRFTATLATGPIAKADLEH 508



 Score = 39.2 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 36/381 (9%), Positives = 100/381 (26%), Gaps = 35/381 (9%)

Query: 90  DAHGYLKEISEELPKTIGN-YAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           DA G+   I+      +G      +IG  +  +      D             T    + 
Sbjct: 156 DAAGHCTYINRSALNLLGYERTEAIIGQDVRAILHDHTSDSATP-------GETGPSGSE 208

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
            W        +P+   + P+       +G     ++  +      R      +K  + L 
Sbjct: 209 RWCRRADGTMLPVRYWSYPLSGE--RSTGESLVTLLDQSEHHESERRARLAAEKLETALR 266

Query: 209 EIKKGHSSVEKEKYD-IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
           +  + + +  +   +     ++P   +    +  + ++    + +               
Sbjct: 267 QADEANLAKSRFVANMSHEIRTPLTAITGFAETLTESDQPPEECERAVNAIIRNSRYLME 326

Query: 268 SLPEQEDFHTINLNQYTKKQYFGT------------LQNNSKESFEYLSHRNHPSLSAYF 315
            +    DF  I   +   +Q                ++    +   +      P      
Sbjct: 327 LVNNILDFSRIESGKLLVEQIETPFETWIREIAAFAIERARGKGLHFDLSVEAPWPRTLV 386

Query: 316 DEGENLTPETVDKCPIPFFVYSHGNL---FYANPSFLLL-TKYKSVDDIEIAGGLSTLLD 371
            +        V+     F     G++      +P    L  +         +     L +
Sbjct: 387 TDPTRAKQILVNLLNNAFKFTEQGSVRLHVVLDPEHERLVLEVTDTGIGIESHRQEELFE 446

Query: 372 APKLSDNNAIKP-------VMLYRSDRTCIAASARLHTIQWNRENSLA-MTFIPFEKANQ 423
           A   +D + ++        + + R+   C+     + ++        A +   P  KA+ 
Sbjct: 447 AFVQADASTMRQHGGSGLGLNIARTLARCLGGELSVRSVFGVGSRFTATLATGPIAKADL 506

Query: 424 FPENMPQNGIEPEDVDTRINK 444
               +     +  +      +
Sbjct: 507 EHRPLHITSDQATETQPLEAR 527


>gi|218690382|ref|YP_002398594.1| sensory histidine kinase AtoS [Escherichia coli ED1a]
 gi|218427946|emb|CAR08866.2| sensory histidine kinase in two-component regulatory system with
           AtoC [Escherichia coli ED1a]
          Length = 608

 Score =  286 bits (733), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 82/371 (22%), Positives = 170/371 (45%), Gaps = 28/371 (7%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            + +         I+E  +DG+  I+R+G + + N A   + GY   +++ +P+++    
Sbjct: 254 AQALRETRTLNDLIIENAADGVIAIDRQGDVTTMNPAAEVITGYQRHELVGQPYSMLF-- 311

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMH 559
              +     + + L                ++ + + L +   ++  +        +   
Sbjct: 312 -DNTQFYSPVLDTLEHGTEHV-ALEISFPGRD-RTIELSVTTSRIHNTHGEMIGALVIFS 368

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           D++  K+ + +++ A+++A        + +A V+HE+R PLTAI G+ +++  Q   P+ 
Sbjct: 369 DLTARKETQRRMAQAERLAT-----LGELMAGVAHEVRNPLTAIRGYVQILHQQTRDPI- 422

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
              + EY + + +  + +  ++  LL+ S+    +    ++ VSL+  V E + LVQ   
Sbjct: 423 ---HQEYLSVVLKEIDSINKVIQQLLEFSRPRHSQ----WQQVSLNALVEETLVLVQTAG 475

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
            + R+   +   N +  I AD   +KQ+ LNIL NA+    + G+I I T   S+ +  +
Sbjct: 476 VQARVDFISELDNELSPINADRELLKQVLLNILINAVQAISARGKIRIRTWQYSDSQQAI 535

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            + D G G+     +K   PF         +  GTGLGL L++ +++A+ G   + S P 
Sbjct: 536 SIEDNGSGIDLSLQKKIFDPFFTT------KAPGTGLGLALSQRIINAHQGDIRVASLPG 589

Query: 800 KGTLIEIIFPL 810
            G    +I P+
Sbjct: 590 YGATFTLILPI 600



 Score = 41.2 bits (95), Expect = 0.86,   Method: Composition-based stats.
 Identities = 23/228 (10%), Positives = 59/228 (25%), Gaps = 7/228 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G +  ++       G    +++G     +    +    + + D L+          
Sbjct: 278 IDRQGDVTTMNPAAEVITGYQRHELVGQPYSMLF--DNTQFYSPVLDTLEHGTEHVALEI 335

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
            +P     + + +  +   I++ + E  G     I        + +    + ++  +   
Sbjct: 336 SFPGRDRTIELSVTTS--RIHNTHGEMIGA--LVIFSDLTARKETQRRMAQAERLATLGE 391

Query: 209 EIKK-GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
            +    H             Q      R       L+      D + K  +  L  S   
Sbjct: 392 LMAGVAHEVRNPLTAIRGYVQILHQQTRDPIHQEYLSVVLKEIDSINKVIQQLLEFSRPR 451

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
               Q+      + +         +Q       E  +  +  +     
Sbjct: 452 HSQWQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSPINADREL 499


>gi|315187538|gb|EFU21294.1| multi-sensor hybrid histidine kinase [Spirochaeta thermophila DSM
           6578]
          Length = 900

 Score =  286 bits (733), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 75/252 (29%), Positives = 129/252 (51%), Gaps = 11/252 (4%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E  +   +L  A ++ EK +  KS+FLA VSHE+RTPL AI+GF+E +K ++     +PR
Sbjct: 383 EVARRTRELREANRLLEKANRAKSEFLANVSHEMRTPLHAIMGFAEALKGEQ-----DPR 437

Query: 623 YIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
             E +   +      +  +++++LD+ K+E GK+ L   P +L E V     +++  A  
Sbjct: 438 EREGHLQLLLSEAQRLKVLIDEILDVEKMEQGKLTLDESPFNLHEVVGYVCRVMEENARR 497

Query: 682 KRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---V 737
           K +       + +P  ++ D   ++Q+ +N++ NA+ FT  GG + +        E   +
Sbjct: 498 KGLSFSFEIEDGVPVWVVGDPFRLQQVLMNLVGNAVKFTEEGG-VRVRVGCVEEGEGRWI 556

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
            + VRDTG+G+     EK  + F Q   S   R  G+GLG+ +A+ +V    G   + S 
Sbjct: 557 EVEVRDTGIGIPEEMREKVFESFVQGDTSTTRRYGGSGLGMTIARELVRLMGGDIGLESE 616

Query: 798 PAKGTLIEIIFP 809
             KGT +    P
Sbjct: 617 VGKGTRVWFRIP 628


>gi|298249830|ref|ZP_06973634.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297547834|gb|EFH81701.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 702

 Score =  286 bits (733), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 96/583 (16%), Positives = 204/583 (34%), Gaps = 41/583 (7%)

Query: 251 DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310
           + VL  +K     S +S L + E    + + ++  +    +L+  +       +  +H  
Sbjct: 131 EQVLARQKAGATLSTKSDLAKIE-HQAVAVIEHIARSLRNSLEIETVAQTAIHAIAHHIR 189

Query: 311 LSAYFDEGENLTPETVDKC---PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
                    + T   +            +    + Y       L    S+        ++
Sbjct: 190 PLKASLFVSDTTHRALRCLSSHQDALAEHHLLGVDYLPFESQDLPLTSSILQQREPVFIT 249

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
            L  A       A  P +         A     H+ ++     +           +    
Sbjct: 250 DLQLAAAQERVPARNPFVTAGILG--YAYLPLWHSNRFEGALCVLFQTPIDPAGPEIRIL 307

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLFG 486
              +      +        +E E   L ++L+   +GI I+      I   N A + + G
Sbjct: 308 RGCSAYIASAMAHARIHTSVEREQSYLQAVLDQLPEGILIVEAANATISYANEAAANILG 367

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNH----------YLTEILSLDLRQTLEKITLGSTKEE 536
              +D++ +P   +  Q     +             +   L  +  +  E I + +    
Sbjct: 368 LESQDVIDQPLHHYRRQMKNEDLRVGGQMLTPWTVIVVRALCGETIKGKEAIVVHAEGSR 427

Query: 537 KLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
            +                   + + D++  K  +                K++F +  +H
Sbjct: 428 LITLASCAPFYTEDGIMKGAVVVLQDVTAQKTFEQH--------------KNEFFSIANH 473

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY-ANYIDRSGNLVLDIVNDLLDISKIESG 653
           E+RTP+T I GF+E+++ +           +Y  + I      +  ++ ++LDIS+IE  
Sbjct: 474 ELRTPITVIQGFAEILQMRAQQETAFDGTTKYALSSIAEQSQHLTHLIEEMLDISRIEQS 533

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF--ANNIPRILADLRSVKQIALNI 711
           +  L  +   L   ++      Q+ A + ++        A++    L D   + Q   N+
Sbjct: 534 RFTLQRQAYDLLPIITNVFQGQQVAARQHQLHFILRGLSASDRLLALVDEERLIQALNNL 593

Query: 712 LSNAIHFTPSGGQIIISTTH----TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
           + NAI ++  G +I +   +      ++EV+  VRD G+G+ N E+    K F +  N  
Sbjct: 594 IGNAIKYSAPGSEIEVGLRYNREQEGDQEVVFWVRDQGIGIANDEIPLIFKRFYRARNVD 653

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           Q +  G G+GL L K ++  + G+ ++ S   KG+      P+
Sbjct: 654 QSQS-GFGIGLYLVKEVISRHGGRIWVESKEGKGSTFYCALPI 695


>gi|150401859|ref|YP_001325625.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus aeolicus Nankai-3]
 gi|150014562|gb|ABR57013.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus aeolicus Nankai-3]
          Length = 640

 Score =  286 bits (733), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 68/247 (27%), Positives = 125/247 (50%), Gaps = 4/247 (1%)

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            K++  KL  +    +K    KS+ ++ VSHE+RTPLT+I G+ E++ +   G + N   
Sbjct: 396 LKKQAEKLEISYNELKKLDKFKSEIISIVSHELRTPLTSIKGYVELVLDGTMGTI-NESQ 454

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
                  + + + +  +++++LD+SKIE G++ +    V+L++ V   +  ++  A+ K 
Sbjct: 455 KRCLEIANENIDRLKRLIDNMLDLSKIERGELKMDISKVNLNDIVQNVVHSLKPLADGKN 514

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
           I I             D   +  +  N++ NAI F+P    + I      N  V + V+D
Sbjct: 515 IKIINKVEP--ITANLDKDKITGVLTNLIENAIKFSPVNENVTIE-AFKENNMVHITVKD 571

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
            G G+   EL K    F Q+ +S +    G+GLGL + K++V+++ GK ++ S   K + 
Sbjct: 572 NGPGIPKSELTKIFDIFYQVNSSAKRIKSGSGLGLAICKSIVESHGGKIWVESKFGKEST 631

Query: 804 IEIIFPL 810
             I+ PL
Sbjct: 632 FHILLPL 638


>gi|326800542|ref|YP_004318361.1| multi-sensor hybrid histidine kinase [Sphingobacterium sp. 21]
 gi|326551306|gb|ADZ79691.1| multi-sensor hybrid histidine kinase [Sphingobacterium sp. 21]
          Length = 850

 Score =  286 bits (732), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 84/264 (31%), Positives = 139/264 (52%), Gaps = 9/264 (3%)

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
             L + DI +  + + +L  AK+ AE  S+ K  FL+ +SHE+RTPL +IIG++E ++++
Sbjct: 326 VLLILSDIRKSNRYRRELEIAKEEAEYHSAAKQRFLSNMSHELRTPLQSIIGYAEQLRDE 385

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
                  P      N I +S   +L IVN++LD ++I SGK + + +   L + + E ++
Sbjct: 386 H------PEDSRKVNVIYQSSEHLLQIVNEVLDYNRINSGKFHFNNQDFYLSQLIEEVVA 439

Query: 674 LVQLYANEKRILIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTH 731
            +QL A EK + +  S        +  D   +KQI  N+LSNAI FT  G   +++ST  
Sbjct: 440 AMQLQAEEKSLSLNLSKEIEGTGYLFGDPFRIKQILYNLLSNAIKFTDQGSVTLMVSTAV 499

Query: 732 TSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
            +   E+ + V DTG G+   ++ +    F Q  NS      G+GLGL + K + +A  G
Sbjct: 500 KNELTELRITVEDTGKGIPESDIHRIFNEFEQAENSNSGTHFGSGLGLSIVKTLCEAMGG 559

Query: 791 KFYIFSTPAKGTLIEIIFPLYDTS 814
              I S   KG+  ++  PL  ++
Sbjct: 560 NIRIKSQLGKGSTFDVFIPLKTST 583


>gi|218890756|ref|YP_002439620.1| putative two-component sensor [Pseudomonas aeruginosa LESB58]
 gi|218770979|emb|CAW26744.1| probable two-component sensor [Pseudomonas aeruginosa LESB58]
          Length = 741

 Score =  286 bits (732), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 90/379 (23%), Positives = 163/379 (43%), Gaps = 19/379 (5%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF--T 498
           +  +  +   +    ++++     ++I   +G +L+ NR   +      E         +
Sbjct: 101 QRTEADLSGRLALKQALVDGIPYPVSIRTLDGRLLACNRNYLESLRMTREQARGTLLTDS 160

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM 558
            ++E +   +M+     +         +          +LL +   +          L +
Sbjct: 161 DWVEGSKARLMHQQCLAVARGGTASFTDMAVRI---GGQLLEIHHWVTPYRDRQGRVLGL 217

Query: 559 ----HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E ++   +L  A + A++ +  KS FLA +SHEIRTP+ A+IG  E +  QR
Sbjct: 218 MNGWIDITERERLARQLREAMRQADEANRAKSVFLATMSHEIRTPMNAVIGILE-LVLQR 276

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
             P    R          +   +  ++ D+LD++KIESG + L  E V L   V     +
Sbjct: 277 LAPEQRERAS--LEVAYEAAGSLQLLIGDILDVAKIESGHLTLTPERVRLRHVVESVRRM 334

Query: 675 VQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
            +  A +K + +     +     +L D    KQ+  N++SNAI FT  G Q+ I     S
Sbjct: 335 FEGLARQKGLRLVVELDDAPGRDVLIDPLRFKQVLSNLVSNAIKFTERG-QVTIRLQERS 393

Query: 734 NEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
            +E    V + V D+G+G+   +  +  +PF Q+   +     GTGLGL + + +VD   
Sbjct: 394 LDEGRAIVRVDVEDSGIGIAPADQARLFQPFIQVAKGRT-VQGGTGLGLAICRKLVDLMG 452

Query: 790 GKFYIFSTPAKGTLIEIIF 808
           G   + S P KGT + +  
Sbjct: 453 GDVEMHSEPGKGTRVSLDL 471


>gi|149376977|ref|ZP_01894731.1| Signal transduction histidine kinase [Marinobacter algicola DG893]
 gi|149358754|gb|EDM47224.1| Signal transduction histidine kinase [Marinobacter algicola DG893]
          Length = 935

 Score =  286 bits (732), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 109/682 (15%), Positives = 228/682 (33%), Gaps = 74/682 (10%)

Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE 245
              V +   A+G+ L  +           S   +         +   + +  + V  +  
Sbjct: 169 PVPVSSISEAVGRVLSGQADAFLGPVPVVSDYLQSAMVNGVGVATLLNQQSVDVVLEMAA 228

Query: 246 YYAHKDDV------LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
               +++           +  L          ++ +    L +        ++   +  +
Sbjct: 229 QSDQENNQKSDQLYRVLNQAVLAIDHGEHRSIRQSWLQTELPELDPSAISLSVDERAFLN 288

Query: 300 FEYLSHRNHPSLSAYFD-----EGENLTPETVDKCPIPFFVYSHGNLFYANPSFLL-LTK 353
                          F+     +   L P+ V +      +         N +      +
Sbjct: 289 RNPNLRVAFRPDWPPFEYTQNGQSAGLVPDLVKRLEEQLNI-RFSRQVMDNSADEENALR 347

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
              VD +        + ++   S      P+ L   D        R    +   E    +
Sbjct: 348 SGEVDILPAMSRTPRVEESFLFSRAYLTVPIALAIRDDGRFIGELR----ELRDEKVGVV 403

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
                                         +  + +    L  ++         + R G 
Sbjct: 404 NRQAGHDYLLINHPNLDLYPVTSI-----EEGLLALSNGDLDVMVTHIPAVSYTVARLG- 457

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
              +N    ++          +            ++N  L  + + +      +      
Sbjct: 458 --LSN---LRITSITPYQYELRFAVSKERPELQRILNKALGSLDATETESIYNRWIHLDI 512

Query: 534 KEEKLLSLRIIIKKLPFSSCYSLTM------HDISEWKQEKNKLSHAK------------ 575
           ++E   ++   I  +                 ++ E  + +N L  ++            
Sbjct: 513 EQETDYTVVRRIVLIAIVVVLIFLYWNRKLSREVDERIRSENALRRSEDELRAAKLEAER 572

Query: 576 --KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
             + AE  S  KS+FLA +SHEIRTP+ A+IG+S+++ N     + +P+   Y + I   
Sbjct: 573 LAREAEAASLTKSEFLANMSHEIRTPMNAVIGYSDLLSNT----VKDPQQRNYLDAIRAG 628

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693
              +L ++ND+LD+S+IE+GKM L +  VS+   +S+   +  L A E+ I +  S  + 
Sbjct: 629 SRSLLMLINDILDLSRIEAGKMRLEYSAVSVRRLLSDVRHIFDLRATEQGISLEVSVDSK 688

Query: 694 IPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----------------- 735
           +P  ++ D   ++Q+  N++ NAI FT  GG + +  T T  +                 
Sbjct: 689 MPAAMMLDETRLRQVLFNLVGNAIKFTHEGG-VTVRATATPRKSSEKQPVEETASEVDRR 747

Query: 736 ---EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
               +++ V DTG+G+   + E+    F Q       R  GTGLGL +++ +V    G+ 
Sbjct: 748 CFYRLVVTVSDTGIGIPPDQQEQIFDAFEQQEGQNTRRYGGTGLGLAISRKLVRMMGGEL 807

Query: 793 YIFSTPAKGTLIEIIFPLYDTS 814
            + S P  G+   +  P  + +
Sbjct: 808 QVESEPGAGSTFTVKLPRVEAT 829


>gi|313149705|ref|ZP_07811898.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
 gi|313138472|gb|EFR55832.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
          Length = 641

 Score =  286 bits (732), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 107/500 (21%), Positives = 178/500 (35%), Gaps = 46/500 (9%)

Query: 325 TVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
            +    I F+ Y    G   +    +  +   K    +            P   D  + +
Sbjct: 29  VLAGHQIAFWEYDIPTGECNF-TDEYFSILGLKEAGIVFREINDFYRFAHPD--DVTSYQ 85

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
                  +     +   +  +  + E           K N+   +               
Sbjct: 86  TAFNRMLESDTKTSQIVVRCLGEHGETIWLEDNFIAYKKNKENGSDKIIAYTANITSRCE 145

Query: 443 NKRKMEIEVMQLCSILEATS-------------DGIAIINREGIILSTNRAVSKLFGYPV 489
            + ++     +   I+EA               D +   + E               +PV
Sbjct: 146 KEVQIRQLEERNRKIIEALPEFIFIFDDNFFITDVLMAPDTE-------------LLHPV 192

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
           E +               +    + E L     + +E      T        RI      
Sbjct: 193 EVLKGADGRSIYSAEVSELFISSIRECLKSGKLKEIEYPLDVETG-RHYFQARIAP---F 248

Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
             +     +HDI +  +   +L  AK+ AE+    KS FLA +SHEIRTPL AI+GFSE+
Sbjct: 249 EGNKVLALIHDIGDRIRRSQELLDAKRRAEEADRMKSLFLANMSHEIRTPLNAIVGFSEI 308

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           I              EY   I ++ NL+L ++ND+LD+S+IESGK  +H +   +     
Sbjct: 309 IA----LTEDEKEKEEYLGIIQQNSNLLLQLINDILDLSRIESGKSEMHCQLTEISGLAD 364

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
           E   + +L   +K + +     ++   I  D   V Q+  N LSNAI  T  G  I    
Sbjct: 365 EVYKVHRLKM-KKGVELNVIRPSDEIWISTDRNRVTQVLFNFLSNAIKNTIEGS-ITFGL 422

Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
                  V   V DTG G++  +L      F ++        +GTGLGLP+ K++V+   
Sbjct: 423 VKEEE-WVKFYVADTGCGISKEKLPLIFTRFEKL----NDFVQGTGLGLPICKSIVERLG 477

Query: 790 GKFYIFSTPAKGTLIEIIFP 809
           G+  + S   KG+   +  P
Sbjct: 478 GRIEVESELEKGSTFTLYLP 497


>gi|15598240|ref|NP_251734.1| two-component sensor [Pseudomonas aeruginosa PAO1]
 gi|9949149|gb|AAG06432.1|AE004729_6 probable two-component sensor [Pseudomonas aeruginosa PAO1]
          Length = 741

 Score =  286 bits (732), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 90/379 (23%), Positives = 163/379 (43%), Gaps = 19/379 (5%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF--T 498
           +  +  +   +    ++++     ++I   +G +L+ NR   +      E         +
Sbjct: 101 QRTEADLSGRLALKQALVDGIPYPVSIRTLDGRLLACNRNYLESLRMTREQARGTLLTDS 160

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM 558
            ++E +   +M+     +         +          +LL +   +          L +
Sbjct: 161 DWVEGSKARLMHQQCLAVARGGTASFTDMAVRI---GGQLLEIHHWVTPYRDRQGRVLGL 217

Query: 559 ----HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E ++   +L  A + A++ +  KS FLA +SHEIRTP+ A+IG  E +  QR
Sbjct: 218 MNGWIDITERERLARQLREAMRQADEANRAKSVFLATMSHEIRTPMNAVIGILE-LVLQR 276

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
             P    R          +   +  ++ D+LD++KIESG + L  E V L   V     +
Sbjct: 277 LAPEQRERAS--LEVAYEAAGSLQLLIGDILDVAKIESGHLTLTPERVRLRHVVESVRRM 334

Query: 675 VQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
            +  A +K + +     +     +L D    KQ+  N++SNAI FT  G Q+ I     S
Sbjct: 335 FEGLARQKGLRLVVELDDAPGRDVLIDPLRFKQVLSNLVSNAIKFTERG-QVTIRLQERS 393

Query: 734 NEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
            +E    V + V D+G+G+   +  +  +PF Q+   +     GTGLGL + + +VD   
Sbjct: 394 LDEGRAIVRVDVEDSGIGIAPADQARLFQPFIQVAKGRT-VQGGTGLGLAICRKLVDLMG 452

Query: 790 GKFYIFSTPAKGTLIEIIF 808
           G   + S P KGT + +  
Sbjct: 453 GDVEMHSEPGKGTRVSLDL 471


>gi|86142593|ref|ZP_01061032.1| sensory transduction histidine kinase [Leeuwenhoekiella blandensis
           MED217]
 gi|85830625|gb|EAQ49083.1| sensory transduction histidine kinase [Leeuwenhoekiella blandensis
           MED217]
          Length = 791

 Score =  286 bits (732), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 111/740 (15%), Positives = 242/740 (32%), Gaps = 48/740 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G++ ++++     +     K        V              LLK+ +    K +
Sbjct: 73  IDVEGHVLKMNDAAVALLEYDPTKEPVFLPALVLPEEQELVAEAFKGLLKKGSITDFKVS 132

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           +    G      + + A  I   N +    +G  IV     +     +     ++   + 
Sbjct: 133 IRTKTGAIRR--VHINASTIVDENNKAIVAQG--IVRDITDEERKARIIDEQKRQLEFIV 188

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE----YYAHKDDVLKTEKYPLLTS 264
                  ++  +        S    L          +      A +    + ++  L   
Sbjct: 189 NNSPLGIALTTDGIIEKCNASFTRILGYPEDRIIGKDLKSITIAAEQSDYEEKRKDLHKG 248

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQN-----NSKESFEYLSHRNHPSLSAYFDEGE 319
              S    + + T +    T K     ++N      ++E                  E E
Sbjct: 249 AFDSFVTTQKYITSSGQIITTKINVSAVRNHDNHTRTQEVITVEDVTKELLAREQLVESE 308

Query: 320 NLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLS-------TLLD 371
           N     + +      + +    +   N  F  +       +       S        L  
Sbjct: 309 NRLSALISRLQSGVLLENEDRAIVLTNQMFCDMFGIPVKPEHMQGLDCSNAAEENKHLFK 368

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
            P+   +   + V   +              ++             F       +     
Sbjct: 369 NPEQFVSRITQIVAERQ--------LVTGDELELLDGRIFE---RDFVPIFSNGQYKGHL 417

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
               +   TR  K  ++ +  +  +I+   + G+  ++ E  IL  N++ S++ GY   +
Sbjct: 418 WSYTDVTVTRRYKNDLQQQKEKYSNIIANMNLGLLEVDTEDRILLANQSFSEISGYDSSE 477

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
           ++ K       + + +V      ++    +  + E        E++   +          
Sbjct: 478 LIGKKAAEVFMKPSDAVQVLKKNDLREKGISDSYEIEVFNKAGEKRNWLISGAPNFDING 537

Query: 552 S--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                     DI+  K  + +        EK +    ++   VSH++++PL +I   +  
Sbjct: 538 KLVGSIGIHLDITTLKDLEAQKESLLNTLEKSNRELQEYAHVVSHDLKSPLRSINALASW 597

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           IK      L + + +E  + ++ +   +  +++ +L+ S I+  + N+  E VS+ E + 
Sbjct: 598 IKEDNLEHL-DEQSLENFSILENTLEKMEGLISGILNYSSIQ--RENIQDEEVSIKEVIE 654

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT-PSGGQIIIS 728
           +  +L+  Y  E    I     +++P +  D   ++Q+  N++SNAI ++    G I I 
Sbjct: 655 DIETLL--YIPEH---IELIVPDDLPIVNVDRTRIQQVFQNLISNAIRYSNKEKGLIRIH 709

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
            T  +   V   V D G+G+     +K  K F     S     E TG+GL + K +VD  
Sbjct: 710 YTEEATRHV-FAVEDNGMGIDKIYHDKIFKIFQ----SLTDHKESTGIGLSIVKKIVDLY 764

Query: 789 MGKFYIFSTPAKGTLIEIIF 808
            G  ++ S   +G       
Sbjct: 765 DGSVWLESELNEGCTFYFSL 784



 Score = 65.0 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 21/163 (12%), Positives = 49/163 (30%), Gaps = 17/163 (10%)

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
           +L  + E   D   +I+ EG +L  N A   L  Y             +      ++   
Sbjct: 58  ELQGVFENLVDAYVVIDVEGHVLKMNDAAVALLEYDPTKEPV-FLPALVLPEEQELVAEA 116

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL--TMHDISEWKQEKNK 570
              +L        +      T   + + +         +        + DI++ +++   
Sbjct: 117 FKGLLKKGSITDFKVSIRTKTGAIRRVHINASTIVDENNKAIVAQGIVRDITDEERKARI 176

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
           +   K+          +F+        +PL  I   ++ I  +
Sbjct: 177 IDEQKRQL--------EFIVN-----NSPL-GIALTTDGIIEK 205



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 43/125 (34%), Gaps = 5/125 (4%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD-ILHIDPNNHIGDLLKRQNTWYGK 146
            +D    +   ++   +  G  + ++IG +  +V              DL ++  +   +
Sbjct: 453 EVDTEDRILLANQSFSEISGYDSSELIGKKAAEVFMKPSDAVQVLKKNDLREKGISDSYE 512

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF--GIVHVNRVDNDPRALGKRLDKKF 204
             ++   G      I  +  P +  N +  G  G    I  +  ++    +L   L+K  
Sbjct: 513 IEVFNKAGEKRNWLI--SGAPNFDINGKLVGSIGIHLDITTLKDLEAQKESLLNTLEKSN 570

Query: 205 SHLHE 209
             L E
Sbjct: 571 RELQE 575


>gi|260892433|ref|YP_003238530.1| multi-sensor signal transduction histidine kinase [Ammonifex
           degensii KC4]
 gi|260864574|gb|ACX51680.1| multi-sensor signal transduction histidine kinase [Ammonifex
           degensii KC4]
          Length = 611

 Score =  286 bits (732), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 93/461 (20%), Positives = 176/461 (38%), Gaps = 34/461 (7%)

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
           I  A   +  L       +  +       +    +     L  +    +N   +     +
Sbjct: 170 IIGAVWATESLGHLAARRHAVLATAYAIIALGVLVGFGGALAVVHRFVQNVNQIKEGLKQ 229

Query: 420 KA-NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL-CSILEATSDGIAIINREGIILST 477
              +      P  G   E          + +   Q    +L   ++G+ +++ EG I+  
Sbjct: 230 LRYDLSRPLKPAAGELGEITAAVNELASLLLRTQQYTRVMLATIAEGLLVVDMEGQIMLA 289

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
           N A  +L G P +    K F   L  NTP      L  +      +  +++        +
Sbjct: 290 NAAAVRLLGLPADW-GGKNFREVLPVNTP---FAELLHLALRKREEVRDRLVACKGDGGE 345

Query: 538 LLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
              L +    L          L + D++E  + + ++   +++A          +A V+H
Sbjct: 346 ERQLLVSTALLFVEEQPIGAVLCVQDVTEQVRLQREMRRQERLA-----SLGRLVAGVAH 400

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           EIR PLTAI  + ++ +     P          N +    N + ++V  LL ++K     
Sbjct: 401 EIRNPLTAINCYLQLWQKSGRFPEKP------LNTMREEINRLDNLVEKLLCLAKP---- 450

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714
             +   P  ++  V +++   +       I I T FA+++P +  D   + ++  N+  N
Sbjct: 451 AEVKKVPYEVNRLVRDSLRFFEEVV---GIRIETDFASDLPEVPLDPEQMGRVLQNLFFN 507

Query: 715 AIHFTPSGGQIIISTTHTSNE-EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
           A      GG + + T    +    ++ V DTG G+    L++  +PF           +G
Sbjct: 508 ACEAMAGGGVLTVRTYKAGDGRHAVIEVADTGCGIPPEHLKEIFEPFFTTKP------QG 561

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           TGLGL LAK +V+A+ G+  + S   KGT + I  PL + S
Sbjct: 562 TGLGLSLAKEVVEAHGGRIEVESELGKGTTMRIYLPLREVS 602



 Score = 45.8 bits (107), Expect = 0.029,   Method: Composition-based stats.
 Identities = 29/315 (9%), Positives = 76/315 (24%), Gaps = 9/315 (2%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D  G +   +    + +G  A    G    +V   ++      +   L+++     +  
Sbjct: 280 VDMEGQIMLANAAAVRLLGLPAD-WGGKNFREVL-PVNTPFAELLHLALRKREEVRDRLV 337

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +G      + ++   ++   +          V         +   +R ++  S   
Sbjct: 338 ACKGDGGEER-QLLVSTALLFVEEQPIG---AVLCVQDVTEQVRLQREMRRQERLASLGR 393

Query: 209 EIKK-GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
            +    H             Q      R   K  +      ++ D L  +   L    E 
Sbjct: 394 LVAGVAHEIRNPLTAINCYLQLWQKSGRFPEKPLNTMREEINRLDNLVEKLLCLAKPAEV 453

Query: 268 SLPEQEDFHTINLNQYTKKQYFG-TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
                E    +  +    ++  G  ++ +       +            +   N      
Sbjct: 454 KKVPYEVNRLVRDSLRFFEEVVGIRIETDFASDLPEVPLDPEQMGRVLQNLFFNACEAMA 513

Query: 327 DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
               +    Y  G+  +A       T      +             P+ +         +
Sbjct: 514 GGGVLTVRTYKAGDGRHAVIEVAD-TGCGIPPEHLKEIFEPFFTTKPQGTGLGLSLAKEV 572

Query: 387 YRSDRTCIAASARLH 401
             +    I   + L 
Sbjct: 573 VEAHGGRIEVESELG 587


>gi|291556372|emb|CBL33489.1| PAS domain S-box [Eubacterium siraeum V10Sc8a]
          Length = 581

 Score =  286 bits (732), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 83/367 (22%), Positives = 153/367 (41%), Gaps = 26/367 (7%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           + +E E  +   ILE+  DG+ + + +  ++S NRA  KL G   E       +   E  
Sbjct: 236 KTLENEREKERFILESLQDGVILYDNDLSVISINRAGLKLLGASDESGA----STVPELA 291

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564
               +     +  + D   T+E    G     ++  +              + + D+++ 
Sbjct: 292 RKPEIISGAEKAANEDRTVTIESTVDGRILLVQVFPVSKSGIDAMHGG--LMVIRDVTDK 349

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           +  +                K+DF A   HE++TPLTAI GF+E +      P     Y 
Sbjct: 350 RMSE--------------QLKADFFANAGHELKTPLTAISGFAE-LLENGLVPKDKKDY- 393

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
            Y   I      +  I++D+L+IS +E+           L E  +     ++  A+ + +
Sbjct: 394 -YIGKILTEAKRMSTIISDILEISSLENKTTAEEVTDCKLSEICTAVKECLEPAASARNV 452

Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744
            I    + +   + A  + + ++  NI+SNAI +   GG++ I   H   E   + VRD 
Sbjct: 453 TI--ELSGDSFTVRAAYKHIYELVENIVSNAIKYNKDGGRVEIML-HDVGETGCIYVRDN 509

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G+    L +  + F ++   +  +   TGLGL + K +V+   G   + S   KGTL+
Sbjct: 510 GIGIPKESLNRVFERFYRVDKGRSTKEGSTGLGLSIVKHIVNCYGGTVTLDSELGKGTLV 569

Query: 805 EIIFPLY 811
            +  P+ 
Sbjct: 570 CVRLPVA 576


>gi|94263606|ref|ZP_01287416.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93456026|gb|EAT06177.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 529

 Score =  286 bits (732), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 91/392 (23%), Positives = 164/392 (41%), Gaps = 40/392 (10%)

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             +     R+ E  +  L +I+    DG+ + N    I   N A     G    +     
Sbjct: 136 VAELAAKTREQENTLSYLNAIIGNIPDGLLVTNDRARITMANPA----LGGMFREAAGGN 191

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---- 552
                 +   +     +   +S   +Q +           ++ S          +     
Sbjct: 192 LVGRDCREVFADSLGPMLAAISTSQQQAVTVQVEL--AGGRIGSAIGTAIYRGGAGQEEF 249

Query: 553 -CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
             Y + + DI+  K+ +                K DF++ VSHE+RTPLT+++GF+ +I 
Sbjct: 250 IGYLIVVRDITHQKEIE--------------RMKDDFVSAVSHELRTPLTSVLGFARLIA 295

Query: 612 NQRFG------PLGNPRYI-------EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
            +  G      P  +PR         +  N I   G  +  ++N++LD+SK+E+GK+   
Sbjct: 296 KKLEGVILPVVPRQDPRVERAVRQVGDNINIIVTEGERLTKLINEVLDLSKMEAGKVEWQ 355

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718
            EPV+ +E V  A+        E    + +     +P +  D   + Q+ +N+++NA  F
Sbjct: 356 LEPVTAEEIVKRALDATTGLFGEGAPELLSEVEPELPVLCCDRDRIMQVLINLIANARKF 415

Query: 719 TPSGGQIIISTTHTSNEE-VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
           T  G ++ +     + EE V+  V D+G G+T   L+   + F Q+ ++   R +GTGLG
Sbjct: 416 TDHG-RVTVRARRAAGEEAVLFEVSDSGCGITPENLQSVFEKFKQVGDTLTDRPKGTGLG 474

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           LP+ K +V+ + G     STP  G+      P
Sbjct: 475 LPICKEIVEYHGGTVTAESTPGAGSTFRFTLP 506


>gi|116051482|ref|YP_789685.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115586703|gb|ABJ12718.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 918

 Score =  286 bits (732), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 77/257 (29%), Positives = 133/257 (51%), Gaps = 8/257 (3%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I+  K+E  +   A + A  E+  KS FLA++SHEIRTPL  ++G  +++++        
Sbjct: 384 INALKEEGFRSRQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPLDRG-- 441

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
                Y   I  SG+ ++ ++ND+LD ++IESGK++L      L+E +S+ ++L    A 
Sbjct: 442 --QAAYVETIASSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAV 499

Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVI 738
           EKR+ +       +PR +  D   ++Q+ +N+LSNA+ FT  G   + +           
Sbjct: 500 EKRLRLHLGLDRGVPRRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVRVQRRFDEGGRER 559

Query: 739 L--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           L   V D+G+G++    +   + F Q  +S   R  G+GLGL +++ +V    G+  + S
Sbjct: 560 LLYSVSDSGIGISAQAQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSS 619

Query: 797 TPAKGTLIEIIFPLYDT 813
            P KGT   +  PL   
Sbjct: 620 EPGKGTRFSVDLPLSPA 636


>gi|113476924|ref|YP_722985.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101]
 gi|110167972|gb|ABG52512.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101]
          Length = 1207

 Score =  286 bits (732), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 72/247 (29%), Positives = 125/247 (50%), Gaps = 3/247 (1%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E  +  N L    +  +     K +FLA  SHE+RTPL  IIG ++ I++   GP+    
Sbjct: 435 ELAESFNHLERKNQELQHLDQLKDEFLANTSHELRTPLNGIIGIADSIRDGATGPIS-EL 493

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             +  + I  SG+ + ++VND+LD SK+    + L    V + E     ++  ++    K
Sbjct: 494 QKKNLSMIVGSGHRLANLVNDILDFSKLRHCSIKLQISSVGMREVTEIVLAFSRMILEGK 553

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS-NEEVILRV 741
            + +  + ++++P + AD   ++QI  N++ NAI FT SG  + +S      N+++ + V
Sbjct: 554 DLQLINAISSDLPPVEADENRIQQIMHNLVGNAIKFTDSG-VVKVSAELIDVNKKMAITV 612

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            DTG+G+   + E   K F Q   S + +  GTGLGLP+ K +V+ + G   + ST   G
Sbjct: 613 SDTGIGIPEDKYEAIFKSFEQGDGSTERQYGGTGLGLPITKKLVELHGGTISVKSTVGIG 672

Query: 802 TLIEIIF 808
           +      
Sbjct: 673 SEFTFTL 679


>gi|313108820|ref|ZP_07794805.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           39016]
 gi|310881307|gb|EFQ39901.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           39016]
          Length = 918

 Score =  286 bits (732), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 77/257 (29%), Positives = 133/257 (51%), Gaps = 8/257 (3%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I+  K+E  +   A + A  E+  KS FLA++SHEIRTPL  ++G  +++++        
Sbjct: 384 INALKEEGFRSRQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPLDRG-- 441

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
                Y   I  SG+ ++ ++ND+LD ++IESGK++L      L+E +S+ ++L    A 
Sbjct: 442 --QAAYVETIASSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAV 499

Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVI 738
           EKR+ +       +PR +  D   ++Q+ +N+LSNA+ FT  G   + +           
Sbjct: 500 EKRLRLHLGLDRGVPRRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVRVQRRFDEGGRER 559

Query: 739 L--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           L   V D+G+G++    +   + F Q  +S   R  G+GLGL +++ +V    G+  + S
Sbjct: 560 LLYSVSDSGIGISAQAQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSS 619

Query: 797 TPAKGTLIEIIFPLYDT 813
            P KGT   +  PL   
Sbjct: 620 EPGKGTRFSVDLPLSPA 636


>gi|300814230|ref|ZP_07094506.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Peptoniphilus sp. oral taxon 836 str. F0141]
 gi|300511654|gb|EFK38878.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Peptoniphilus sp. oral taxon 836 str. F0141]
          Length = 605

 Score =  286 bits (732), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 89/402 (22%), Positives = 166/402 (41%), Gaps = 37/402 (9%)

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
           +  +  ++  +         +++   I K  +E    +L +I    ++G+  ++R   ++
Sbjct: 231 VDVKSNDEIGQLGNMFNYLTDELKNTIAKNDLERS--KLNTIFNYMAEGVIAVDRTNKLI 288

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
             N     L       I  +     +               ++ D+ ++L+   L   K 
Sbjct: 289 HANSIAKNLLSLDDSRINTQINLKKIGLKD-----------INYDIEKSLQGEVLAEIKN 337

Query: 536 EKLLSLRIII--KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
                L+       L  +    + + DI                  +    + +F+A VS
Sbjct: 338 -HFYKLKYAPYKSDLKENEGLIIVLSDI--------------NKEHRLDILRKEFVANVS 382

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HE++TP+T I  ++E + N   G         +   I+R    +  +V+DLL +S I+  
Sbjct: 383 HELKTPITTIGSYTETLLNGVAG----EDINHFLKVIERENARMARLVSDLLVLSNIDYK 438

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713
           K +L+ E     E + EA+    L  ++K   I       I  I +D     QI +NI+S
Sbjct: 439 KEHLNKETFDCYEFIEEAVESQSLLISQKSHNISIDVPIKIRTIYSDRHGASQILINIIS 498

Query: 714 NAIHFTPSGGQIIISTTHTSNEE---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           NA+ +T  GG+I+I+  +  N +   V + V+D G+G+   +L    + F ++   +   
Sbjct: 499 NALKYTKEGGKILIAAENYKNGKNNFVKISVKDNGIGIPKEDLPMIFERFYRVEKGRSRE 558

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
             GTGLGL +A  M+ +  G   I ST   GT +E+ FP  D
Sbjct: 559 MGGTGLGLSIANEMIKSLGGSIKISSTLNVGTDVELFFPAGD 600


>gi|238026793|ref|YP_002911024.1| phosphate regulon sensor protein PhoR [Burkholderia glumae BGR1]
 gi|237875987|gb|ACR28320.1| Phosphate regulon sensor protein PhoR [Burkholderia glumae BGR1]
          Length = 436

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 81/411 (19%), Positives = 164/411 (39%), Gaps = 35/411 (8%)

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT-----RINKRKMEIEVMQLCSILEATS 462
                   +      + P      G     +           R++E +  +    ++A+ 
Sbjct: 49  HTQRLWRLLDAPVYGEVPSAPGIWGEIYYRLHKLAKQWHAQVRQVEQQHSRFIQAIQASP 108

Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522
           +G+A+++    I   N      FG   +  LR+  T  +              +  L+ +
Sbjct: 109 NGVAMLDDHDQIEWCNAIAELHFGLDAKRDLRQHITHLVRHPDF---------VRYLNSQ 159

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES 582
              E + +    E +   + + +     +    LT  DI+E ++                
Sbjct: 160 HYDEMVVMRGMGEGRQHVIAVQVFPYGDNRKLLLT-QDITEVERT--------------D 204

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
           + + DF+A VSHE++TPLT + GF E ++     PL +     Y + +++  + +  IV 
Sbjct: 205 AMRRDFVANVSHELKTPLTVLSGFLETLRE---LPLSDDERARYLDMMEQQASRMRKIVT 261

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702
           DLL ++K+E        +PV +D+ +     + Q  +      I       +  +     
Sbjct: 262 DLLVLAKLEGEGKPPTDKPVDMDDVLGHLEDVAQTLSAGHH-EISFEIDETL-TVTGAET 319

Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
            +     N+++NA+ +TP GG+I +S       + +  V+D+G G+   +L +  + F +
Sbjct: 320 EIFSALGNLVTNAVRYTPEGGKIRVSWR-RDGAQAVFSVKDSGFGIPAEDLPRLTERFYR 378

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
           +  S+     GTGLGL + K ++  + G+  I S   +G+     FP   T
Sbjct: 379 VDRSRSRDTGGTGLGLAIVKHVLQRHDGQLLIQSEEGRGSTFTARFPAQRT 429


>gi|284053811|ref|ZP_06384021.1| multi-sensor hybrid histidine kinase [Arthrospira platensis str.
           Paraca]
          Length = 784

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 81/352 (23%), Positives = 142/352 (40%), Gaps = 23/352 (6%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP-------VEDILRKPF 497
           R++      L   LEA   G+ + ++ G I   N+ +  LF +         +       
Sbjct: 436 RQLYDREYWLKQFLEALPVGVLVYDKNGNIYYANQKLKDLFRHEHIPEVSLEDFAGINNL 495

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY--S 555
            +             L   L   +             +    SL          +     
Sbjct: 496 YLNGTDQVYPTKALPLIRALKGKIVPIENIEIRHPD-QTICCSLMATPIFDSDEAIVYGI 554

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSH-------KSDFLARVSHEIRTPLTAIIGFSE 608
               DI++ +Q + +  +  K  ++++         K +FLA  SHE+RTPL  +IG SE
Sbjct: 555 AVFEDITQRRQAEMERQNFTKQLKEKNDALKRMDELKDEFLANTSHELRTPLNGMIGLSE 614

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
            + +   GPL      +  + I +SG+ +  +VND+LD SK+    + L  +P+ L E V
Sbjct: 615 SMLDGVGGPLT-ELQRQNLSMIAKSGHRLSTLVNDILDFSKLRHQTLELKLQPLGLREIV 673

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
              + L +     K I +      + P + AD   ++QI  N++ NAI FT SG  + I+
Sbjct: 674 EVIVVLSKPLIGNKDIELINEIPADFPAVNADENRLQQILYNLIGNAIKFTDSG-TVKIT 732

Query: 729 TTHTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
            +    E      ++ + DTG+G+   +  +  + F Q   S   +  GTGL
Sbjct: 733 ASVLDTEVNHSTAVINIYDTGIGIPPDKHHRIFESFEQGDGSTARQYGGTGL 784



 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/218 (9%), Positives = 62/218 (28%), Gaps = 6/218 (2%)

Query: 241 SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF 300
             +         ++   K     ++              + +  +       Q     S 
Sbjct: 364 IGMFMARRVTRPLVNLNKAARKFAQGDWEHSVNISRCQEVGELAQSFNQMAAQIRQSFSE 423

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDD 359
               +    +L+    + E    + ++  P+   VY  +GN++YAN     L +++ + +
Sbjct: 424 LEEQNNISKALNRQLYDREYWLKQFLEALPVGVLVYDKNGNIYYANQKLKDLFRHEHIPE 483

Query: 360 --IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
             +E   G++ L               ++       +        I+   +     + + 
Sbjct: 484 VSLEDFAGINNLYLNGTDQVYPTKALPLIRALKGKIVPIENI--EIRHPDQTICC-SLMA 540

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
               +     +    +  +    R  + + +    QL 
Sbjct: 541 TPIFDSDEAIVYGIAVFEDITQRRQAEMERQNFTKQLK 578


>gi|269101851|ref|ZP_06154548.1| BarA sensory histidine kinase [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268161749|gb|EEZ40245.1| BarA sensory histidine kinase [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 921

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 87/341 (25%), Positives = 158/341 (46%), Gaps = 18/341 (5%)

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
           F Y +   + +P +  +      V++      L + +   L             +++ + 
Sbjct: 191 FAYRLMQDVTRPISHMVS-----VVDRIRRGHLDIRIEGRLLGELDTLKNGINAMAISLS 245

Query: 545 IKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
              +           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTPL
Sbjct: 246 EYHVEMQQSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPL 305

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
             ++GF+  +   R     NP   +Y   I++S N +L I+ND+LD SK+E+GK+ L   
Sbjct: 306 NGVLGFTRQMLKTRL----NPSQQDYLLTIEKSANNLLTIINDILDFSKLEAGKLLLENI 361

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFT 719
           P    E++ E + L+   A+EK + +     + IP  ++ D   ++Q+  N++ NA+ FT
Sbjct: 362 PFDFAESLDEVMRLLAPTAHEKGLELTLKVDDRIPPSLIGDALRIQQVLTNLIGNAVKFT 421

Query: 720 PSGGQ-IIISTTHTSNEE---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
             G   + +      ++E   +   VRDTG+G++  +  +  + F Q   S   R  GTG
Sbjct: 422 ERGNIDVTVELKSDKDDEGIELQFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTG 481

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           LGL + + +V    G+  + S   +G+       L  T  P
Sbjct: 482 LGLVITQKLVSQMGGEVSLTSRLHQGSTFWFTVRLTKTDLP 522


>gi|254718728|ref|ZP_05180539.1| integral membrane sensor signal transduction histidine kinase
           [Brucella sp. 83/13]
 gi|306838706|ref|ZP_07471541.1| integral membrane sensor signal transduction histidine kinase
           [Brucella sp. NF 2653]
 gi|306406193|gb|EFM62437.1| integral membrane sensor signal transduction histidine kinase
           [Brucella sp. NF 2653]
          Length = 609

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 92/349 (26%), Positives = 168/349 (48%), Gaps = 4/349 (1%)

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
             ++ EGI+ S +   +KL G   + +        +           L ++ +    + +
Sbjct: 211 FGLDIEGIVSSVDGETAKLLGVQPKMLEGTALIDRVHVADRVQYLSLLADLRAGMATRKV 270

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
           +            +      +        +L    +   ++  ++++  K   E E   K
Sbjct: 271 DVRLRSIE-NGNPVFRAYRFEGAGSHRAITLIGRSLEGEQKLLDEIAMLKAELESERIGK 329

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
              LA VSHE+RTPL +IIGFS+++ ++  G L + R  EYA  I +SG+ +L++VN +L
Sbjct: 330 GRLLATVSHELRTPLNSIIGFSDMLTHEIGGKLASDRQREYAGLIHQSGHYLLELVNAVL 389

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
           D S++E+G  ++  +     +AV    +++   A +K +       N +  ++AD R+V+
Sbjct: 390 DNSRLETGTYSIAPQSFVFRDAVEMCTAVMLPQAEKKGVAFCHRVGNGVGELVADRRAVQ 449

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNE---EVILRVRDTGVGMTNYELEKAMKPFGQ 762
           QI LN+ +NA+ FT SGG + I       +    +   V DTG+G+   +L++   PF +
Sbjct: 450 QILLNLATNAVKFTQSGGCVTIDAARVMADGCPMLEFSVSDTGIGIEPEDLQRIGTPFVR 509

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
             NS     EG+GLGL + K +V+ + G   + S P +GT++ I  PL 
Sbjct: 510 ADNSYTQAQEGSGLGLSVVKGLVELHQGSMQLKSRPGEGTVVMIRLPLA 558


>gi|229090039|ref|ZP_04221290.1| hypothetical protein bcere0021_8740 [Bacillus cereus Rock3-42]
 gi|228693269|gb|EEL46979.1| hypothetical protein bcere0021_8740 [Bacillus cereus Rock3-42]
          Length = 709

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 79/338 (23%), Positives = 148/338 (43%), Gaps = 18/338 (5%)

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            +D++++            +    +  +L      T E        + +   L++  ++L
Sbjct: 208 HQDLIQQTVDNLGLTIHSIMGRMRIQTLLHESQAMTEELQVQSEELQTQAEELQMQAEEL 267

Query: 549 PFSSCYSLTMHDISEWKQEKN-----KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
             ++    +  + +E K         +L        + S +KS+FLA +SHE+RTPL +I
Sbjct: 268 RTTNEQLESRTEEAEQKTADLQITKLELEEKASELLRSSKYKSEFLANMSHELRTPLNSI 327

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +  SE++K      L +    E A  I  SG  +L ++ND+LD+SK+E+GK+++ FE  +
Sbjct: 328 LLLSEMLKENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIFEATN 386

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSG 722
           + +  +         A +K +      ++ IP +   D + ++QI  N+LSNA  FT  G
Sbjct: 387 ISDMAASMQQNFLHIAAQKNVEFTVENSDTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKG 446

Query: 723 GQ------IIISTTHTS-----NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
                   I  S           + + + V+DTG+G+   + +   + F Q   +   + 
Sbjct: 447 SVSLHFDSIETSNLSDDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGATIRKY 506

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            GTGLGL + K       G   + S   +G+   +  P
Sbjct: 507 GGTGLGLSICKEFARLLGGWITLESHVGEGSTFTVYIP 544


>gi|169835706|ref|ZP_02868894.1| two-component sensor kinase, probably involved in phosphate sensing
           [candidate division TM7 single-cell isolate TM7a]
          Length = 660

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 84/375 (22%), Positives = 162/375 (43%), Gaps = 34/375 (9%)

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP---SVMNHY 512
           +I+ + SDG+ +    G I+  N A  ++ G+   D L       L+        + +  
Sbjct: 177 TIIRSISDGVIMTKDSGQIILINPAAQRMIGWSAADALGLHINSVLKFEDEKGNPISDTA 236

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572
              ++SL  ++      +  TK  K L++ ++I  L       +   D +          
Sbjct: 237 HPVVVSLANKKVQRINLVVVTKSNKKLNISLMITPL-DEGGVIVVFRDTT---------- 285

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
                   E   +++F++  SHE+RTP+ +I G+  +  N +   + + +  EY +    
Sbjct: 286 ----KERAEEREQAEFISTASHEMRTPVASIEGYLGLALNPKVSKI-DAKAYEYISKAHE 340

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI------ 686
           S   +  ++ DLL+IS+ E G++      V+  +   +A   +   A EK + +      
Sbjct: 341 SAQYLGRLLRDLLEISRAEDGRLKNRITAVNAIDISRKATEDLIKEAREKGLNLLYKPTG 400

Query: 687 ------RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
                   + +  +  + AD   +++   N++ NAI +TPSG QI +    + NE +   
Sbjct: 401 GRSKSGDVTISP-VLYVRADKDRLQECLSNLIENAIKYTPSG-QIAVDVNAS-NEYIRFS 457

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V DTG+G+   ++    + F ++ NS      G+GLGL L + MV++  G+    ST  K
Sbjct: 458 VSDTGIGIPPEDIPHLFQKFYRVDNSDTREINGSGLGLYLTRRMVESMNGRIGATSTRNK 517

Query: 801 GTLIEIIFPLYDTSH 815
           G+   I  P    + 
Sbjct: 518 GSTFYIDLPRIRNAQ 532


>gi|229543484|ref|ZP_04432544.1| GAF sensor hybrid histidine kinase [Bacillus coagulans 36D1]
 gi|229327904|gb|EEN93579.1| GAF sensor hybrid histidine kinase [Bacillus coagulans 36D1]
          Length = 921

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 73/261 (27%), Positives = 130/261 (49%), Gaps = 15/261 (5%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E ++ K++L    +   + S +KS+FLA +SHE+RTPL +I+  SE++ ++         
Sbjct: 497 ELEKTKHQLEEKAEQLIQSSQYKSEFLANMSHELRTPLNSILLLSEMLADESEEGNLTEE 556

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             E+A  I  SG+ +L+++ND+LD+SK+E+GKM +  E  +  E      +     A +K
Sbjct: 557 QKEFARVIHSSGSDLLNLINDILDLSKVEAGKMEIVIEETNTRELPVYVGNQFAYLAEQK 616

Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIS---TTHTSNE--- 735
            + ++    +N+P  I  D R  +QI  N+LSNA+ FT +G  +       +  +     
Sbjct: 617 GLELKIDVDDNVPDLIYTDQRRFQQIVKNLLSNAVKFTENGS-VTFRMRKVSAETAGKYV 675

Query: 736 -------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                   + + V+DTG+G+   + +   + F Q   +   +  GTGLGL + +      
Sbjct: 676 KTEGADFWLEVAVQDTGIGIPEKKQDLIFEAFQQGDGATGRKYGGTGLGLSICREFARLL 735

Query: 789 MGKFYIFSTPAKGTLIEIIFP 809
            G   + ST  KG+   +  P
Sbjct: 736 GGTICLDSTVGKGSTFILYIP 756


>gi|60680665|ref|YP_210809.1| putative two-component system sensor histidine kinase/response
           regulator fusion protein [Bacteroides fragilis NCTC
           9343]
 gi|60492099|emb|CAH06862.1| putative two-component system sensor histidine kinase/response
           regulator fusion protein [Bacteroides fragilis NCTC
           9343]
          Length = 637

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 109/487 (22%), Positives = 180/487 (36%), Gaps = 20/487 (4%)

Query: 325 TVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
            +    I F+ Y    G   +    +  +   K    I     ++         D  + +
Sbjct: 29  VLAGHQIAFWEYDIPTGECNF-TDEYFHILGLKEAGIIFR--DINDFYRFAHPEDVISYQ 85

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
                  +     +   +  +    E           K N+   +               
Sbjct: 86  TTFARMLESETKISQIVVRCVGRRGETIWLEDNFIAYKKNKENGSDKIIAYTANITSRCE 145

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            + ++     +   I+EA  + I I +    I     A      +PVE +          
Sbjct: 146 KEVQIRQLEERNRKIIEALPEFIFIFDDNFFITDVLMAPDTELLHPVEVLTGADGRSIYS 205

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
                +    + E L     + +E               RI        +     +HDI 
Sbjct: 206 SEVSDLFISSIHECLKSGKLKEIEYPVDV-EAGRHFFQARIAPF---EGNKVLALIHDIG 261

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  +   +L  AK+ AE+    KS FLA +SHEIRTPL AI+GFSE+I            
Sbjct: 262 DRMRRSQELLEAKQRAEEADRMKSVFLANMSHEIRTPLNAIVGFSEIIA----LTEDEKE 317

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             EY   I ++ NL+L ++ND+LD+S+IESGK  +H +   +   V E   + +L   +K
Sbjct: 318 KEEYLGIIQQNSNLLLQLINDILDLSRIESGKSEMHCQLTEMSGLVDEVDKVHRLKM-KK 376

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
            + +     +    I  D   V Q+  N LSNAI  T  G  I           V L V 
Sbjct: 377 GVKLNVIRPSEEIWISTDRNRVTQVLFNFLSNAIKNTIEGS-ITFGLVKEEE-WVKLYVT 434

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG G++  +L      F ++        +GTGLGLP+ K++V+   G+  + S   +G+
Sbjct: 435 DTGCGISKEKLPLIFTRFEKL----NDFVQGTGLGLPICKSIVERLGGRIEVESELGQGS 490

Query: 803 LIEIIFP 809
              +  P
Sbjct: 491 TFILYLP 497


>gi|254760494|ref|ZP_05212518.1| sensor histidine kinase [Bacillus anthracis str. Australia 94]
          Length = 499

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 89/508 (17%), Positives = 176/508 (34%), Gaps = 41/508 (8%)

Query: 314 YFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                E      +   P+    +  +G+    N    ++T Y + + I     L  L   
Sbjct: 11  LLTRKEEELHTILQNMPVMVDALDYNGDFVLWNRECEIVTGYTAEEVIGNPDALQLLYPD 70

Query: 373 PKLSDNNAIKPVML----YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
                    K +         +      +  + TI W+                      
Sbjct: 71  HNYRHEIQKKFLTRGKNFRDWEMRLTCKNGEIKTIMWSN-----------ISEQFPVSGF 119

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
               +  +    +  + K++ +  +L  I +A  D   +   +G I+         F  P
Sbjct: 120 SYWAVGVDITHLKAIEEKLKQQTSELELIFQALPDLCFLTEDDGTIIDYKAGSPTKFYVP 179

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            E  + K F   L  +    +   + ++        +E     +   +           L
Sbjct: 180 AEAFMGKKFYEVLPSSVAQKLQEAICQVKEKGTNVIVEYPLTINESIDFF---EARCLPL 236

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                  + + DI+E K+ +  L+ +  +A           A V+HE+R PLT I GF +
Sbjct: 237 LHDK-IMIIVRDITERKKTEELLNKSDTLA-----AIGQLAAGVAHEVRNPLTVIKGFIQ 290

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
                    +      +Y + +      +  I+ + L I+K +     +  E  ++ +  
Sbjct: 291 ------LFQINKEDQEKYFDLMLSEIERIEAILQEFLSIAKTD----EISTEKKNIYQIF 340

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
              +SL+   A    I +     +    I      +KQ+ +NIL N+I   P GG+I I 
Sbjct: 341 KNVVSLINTKAIMTNIQVELYTDSKDIIIECSENQLKQVFINILQNSIEAMPDGGRISIH 400

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                   +I+ V D G+G+    +++  +PF         + +GTG+GL L+  +++++
Sbjct: 401 IKEIGKYGIIISVIDKGIGIPAERIKRLGEPFY------STKEKGTGIGLMLSYKIIESH 454

Query: 789 MGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
            G   I S    GT + I  P   +  P
Sbjct: 455 QGNISIMSEVGVGTTVTIYLPKIQSKKP 482


>gi|302876834|ref|YP_003845467.1| multi-sensor signal transduction histidine kinase [Clostridium
           cellulovorans 743B]
 gi|307687519|ref|ZP_07629965.1| multi-sensor signal transduction histidine kinase [Clostridium
           cellulovorans 743B]
 gi|302579691|gb|ADL53703.1| multi-sensor signal transduction histidine kinase [Clostridium
           cellulovorans 743B]
          Length = 612

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 87/420 (20%), Positives = 171/420 (40%), Gaps = 13/420 (3%)

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
           W       +     +K +     + +  I+      R  +  +         ++  + D 
Sbjct: 174 WPLGYFTKINSEALKKKDVELNVLNKELIKNHI-HRRNIEELLINNQDCYNLLINNSLDA 232

Query: 465 IAIINREGIILSTNRAVSKLFGY-PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
           I +  RE   L  N +   LFG    + I ++     +E+     +  +  + +    + 
Sbjct: 233 IVVH-RELTCLFANDSAVNLFGMKNGKRIYKQKLIELIEEGERDRVAQFFRDAIKDKCQS 291

Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKK------I 577
              +  + S  +   +    I               DIS  KQ +      ++       
Sbjct: 292 LKFESVIKSKDKNLEVESTSIFITYEGEPTTLTIFRDISHKKQVEKLKIDVQRNVELLTE 351

Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI---KNQRFGPLGNPRYIEYANYIDRSG 634
           + + ++      + +SHE++TPL  I    +V+      +      P   +Y N + ++ 
Sbjct: 352 SLEFNNSIMQLFSNISHELKTPLNIIFAAVQVLSISMRDKAREEYLPMSEKYFNIMKQNC 411

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
             +  ++N+ LDI+KI+SG +N+  +  ++   V +    V  Y   K + I        
Sbjct: 412 YRLTRLINNFLDITKIDSGFVNITLKKCNIVNIVEDITLSVAPYVESKELKITFDTEVEE 471

Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELE 754
             I  D+  +++  LN++SNAI FT  GG I I+     + +V + VRDTGVG+   +LE
Sbjct: 472 IIINCDVDKIERCLLNLISNAIKFTNPGGDIFININQCDD-KVAISVRDTGVGIPEDKLE 530

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
              + FGQ+  + +   EGTG+GL L K++V+   G+  + S    G+   + F + +  
Sbjct: 531 LIFERFGQVDKTLRRNREGTGIGLTLVKSLVEIQGGQIEVHSLLGVGSEFVMKFTIEEEE 590


>gi|326317378|ref|YP_004235050.1| PAS/PAC sensor signal transduction histidine kinase [Acidovorax
           avenae subsp. avenae ATCC 19860]
 gi|323374214|gb|ADX46483.1| PAS/PAC sensor signal transduction histidine kinase [Acidovorax
           avenae subsp. avenae ATCC 19860]
          Length = 477

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 83/423 (19%), Positives = 164/423 (38%), Gaps = 43/423 (10%)

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC---SILEAT 461
           W     L         +      +     +      R N+  +     +L    + L+AT
Sbjct: 45  WRGSRVLRWLRDGDLASCPSLRGVWGEAADRTRRLLRQNQADIAASDARLQEILAALQAT 104

Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
            +G+ +++ EG I   N+     FG      + +     L     S              
Sbjct: 105 PNGVVLLDAEGHIEWCNQIAVTQFGLDAARDMGQSIGNLLRDPEFSAYYAA--------- 155

Query: 522 RQTLEKITLGSTKEE---KLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578
            Q   +  +   +E    + + + + +          L+  D++  +Q +          
Sbjct: 156 -QDFSRDVVLQGRESTASRPVRISVHLHPYGDGRKLLLS-RDVTALEQAE---------- 203

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
               + + DF+A VSHEIRTPLT ++GF E ++     PL +     Y N + +    + 
Sbjct: 204 ----AMRRDFVANVSHEIRTPLTVLMGFVETLQT---LPLSSEERARYLNMMSQQAGRMQ 256

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA------ISLVQLYANEKRILIRTSFAN 692
            +V DLL +S++E        E   +D  +         +S +   +     ++    A 
Sbjct: 257 SVVQDLLTLSRLEGSPPPGLTECTPVDALLRRCEDEARGLSALLTRSQSAGHVLEFPPAE 316

Query: 693 NI---PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749
            +    +++     ++    N++ NA+ +TP+GG+I ++    ++      VRDTG G+ 
Sbjct: 317 ALQGAGQLVGVAAELQSALANLIGNAVRYTPAGGRITVAWETLADGSGRFSVRDTGPGIE 376

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
              + +  + F ++  S+     GTGLGL + K +V  +     I ST  KG++  + FP
Sbjct: 377 AVHIPRLTERFYRVDRSRSRDTGGTGLGLAIVKHVVQRHSASLGIESTVGKGSVFSVTFP 436

Query: 810 LYD 812
            + 
Sbjct: 437 AHR 439


>gi|223983037|ref|ZP_03633241.1| hypothetical protein HOLDEFILI_00520 [Holdemania filiformis DSM
           12042]
 gi|223964987|gb|EEF69295.1| hypothetical protein HOLDEFILI_00520 [Holdemania filiformis DSM
           12042]
          Length = 748

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 106/482 (21%), Positives = 191/482 (39%), Gaps = 30/482 (6%)

Query: 341 LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400
           L  AN +   +        I      S   D                R+D     +    
Sbjct: 111 LTTANFAVAQV-GDSYDQVIAQFAHSSM--DQDTGLRIEKQMQREQVRADYAVGKSEYHF 167

Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
             ++  RE +           N     +       +  + ++ ++ ++        I+  
Sbjct: 168 EFLRSTREGAFWSHTTFHSCLNPETGELILFFYTLDITEQKLQEQLLDQ-------IVSL 220

Query: 461 TSDGIAIINR---EGIILSTNRA---VSKLFGYPVEDILRKPF-TVFLEQNTPSVMNHYL 513
             D IA I+    +  I ++N         F   +E    +   + F+ +    +    +
Sbjct: 221 NYDIIAEIDAHSGQLRIHASNDPMVPAEDQFSLAIEQFASRYVKSEFIAEYRRQLDLDRM 280

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN---- 569
              L+     T          + + + +  +           +T  D++E  +++     
Sbjct: 281 KRTLAEQGPYTFSVEMQDDQGQTR-VKVYKVFYLDRQLERLCVTRSDVTEVVRQEQTQKA 339

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L+ A   A++  + K+DFL+R+SHEIRTP+ AI+G S +       P    R  E    
Sbjct: 340 ELAAALNAAQQADAAKTDFLSRMSHEIRTPMNAILGMSAIAAQSLNDP---DRVGECIEK 396

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I  S   +L ++ND+LD+S+IESGK+ L+  P+     +    +L    A  K +  R  
Sbjct: 397 IQLSSRFLLGLINDILDMSRIESGKLLLNNGPLVTRRLIEGVSTLCAGQAAAKGVRYRCV 456

Query: 690 FANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIIST----THTSNEEVILRVRDT 744
              ++      D   ++Q+ +NILSNA+ FT SGG++++          N  V   +RDT
Sbjct: 457 VDPSLQTEYTGDSMKLQQVLVNILSNAVKFTDSGGEVVLHASQVQAKKENAVVRFVIRDT 516

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           GVG++   L    +PF Q          G+GLGL ++K++VD   G+  + S   KGT  
Sbjct: 517 GVGISPEFLPHLFEPFSQESTGTTAAYGGSGLGLAISKSVVDLMDGRISVRSEKGKGTEF 576

Query: 805 EI 806
            I
Sbjct: 577 II 578


>gi|255526818|ref|ZP_05393717.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           carboxidivorans P7]
 gi|296186417|ref|ZP_06854820.1| PAS domain S-box domain-containing protein [Clostridium
           carboxidivorans P7]
 gi|255509497|gb|EET85838.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           carboxidivorans P7]
 gi|296048864|gb|EFG88295.1| PAS domain S-box domain-containing protein [Clostridium
           carboxidivorans P7]
          Length = 775

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 91/530 (17%), Positives = 189/530 (35%), Gaps = 26/530 (4%)

Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN--LFYANPSFLLLTK 353
              + + L  ++    +   ++ +      ++      FV           N +   +  
Sbjct: 223 EDVTEKVLLRKSSQEQAKIINKQKEKLEIIMENMFDGLFVIDKHYKYTLLNNSAREFMFN 282

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
           +  +  +  +       D+          P+                       +     
Sbjct: 283 FHPLKSVGDSLSYIKYYDSLGNLIPVKELPITKVLKGEKVKEFRITCGMK----DEMHNF 338

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINK--RKMEIEVMQLCSILEATSDGIAIIN-R 470
                   +   +      I     D    +  R ++ ++    +++     G    +  
Sbjct: 339 DISGSPIYDNKGDFDSGIIIVRNVTDKIKAEENRLLKTQLNFFNNMIANLKVGFVRYSYP 398

Query: 471 EGIILSTN-RAVSKLFGYPVE-----DILRKPF--TVFLEQNTPSVMNHYLTEILSLDLR 522
           E  I+  N +    L            I+ K         ++  +     +  I+   + 
Sbjct: 399 EYKIIEINNKTYDDLKQINPGVGNVLSIIGKNLFSAFNFTKDEEAEFRKNIQNIVDKKVN 458

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES 582
                     + EE+ L L  I + L   +  ++ + DIS    ++ K  +  K   +  
Sbjct: 459 SNFNYHKFYLSGEERFLKL--IHQPLVGINGKAVEIIDISTDITDEVKAKNEMKKIFQIH 516

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVI---KNQRFGPLGNPRYIEYANYIDRSGNLVLD 639
               +  A VSHE++TPL  I   ++++     +    +   +     + I ++   +  
Sbjct: 517 E---ELFANVSHELKTPLNVIFSTNQLMELYLKKGLVEVNKEKVFRDVDIIKQNCYRLTK 573

Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA 699
           ++N+++D+SKIESG   L+    ++ E     +  V  Y   K I I          I  
Sbjct: 574 LINNIVDLSKIESGFFKLNLSNENIVEVTENIVQSVSEYIKRKEINIIFDTNTEEKIIAC 633

Query: 700 DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKP 759
           D   +++I LN++SNAI F+ SGG I ++        V + V DTG+G+    L+     
Sbjct: 634 DPEKIERIILNLISNAIKFSNSGGSIFVNV-LDKGGIVEISVEDTGIGIEKKYLDNIFGR 692

Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           F Q+  S     EG+G+GL L K++V+ + GK  + S   KG++ ++  P
Sbjct: 693 FQQVDKSLSRNVEGSGIGLSLVKSIVEMHGGKISVASEVGKGSIFKVELP 742


>gi|225569632|ref|ZP_03778657.1| hypothetical protein CLOHYLEM_05726 [Clostridium hylemonae DSM
           15053]
 gi|225161102|gb|EEG73721.1| hypothetical protein CLOHYLEM_05726 [Clostridium hylemonae DSM
           15053]
          Length = 870

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 85/325 (26%), Positives = 141/325 (43%), Gaps = 16/325 (4%)

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS------ 562
            + YL  +        +       T  ++++ L   I  +     + +    ++      
Sbjct: 269 HHEYLYYVPVHGTDWYMVTSMAYETVNDQIVYLSRFIVIVGVGIFFIILATVLTFFLLLR 328

Query: 563 -EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
              K+    L   K+ AE  +  KSDFL+++SHEIRTPL  I+G  E+    +       
Sbjct: 329 RSEKRSSELLRTEKERAETANRAKSDFLSQMSHEIRTPLNGIMGMVEL---GKHHIEEPD 385

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
           R     + I  S   +L ++ND+LD+SKIESGK+ LH E   L   +    ++  + A  
Sbjct: 386 RMRNCLDKITLSSAHLLSLINDILDMSKIESGKIELHPERFDLGRLLRTLTTVFLVQAKN 445

Query: 682 KRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIII---STTHTSNE-E 736
           K+I  +      +   +  D   + QI  N+LSNA+ FTP+ G + +         N   
Sbjct: 446 KQIDFQIFLYGELEEYLTGDALRLNQILTNLLSNALKFTPAHGYVSLNVEELQRDENGIW 505

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           +   VRDTG G+    LE+  + F Q  +       GTGLGLP+ K  V    G   + S
Sbjct: 506 LRFEVRDTGRGIAPENLERVFEAFTQENSGIVREYGGTGLGLPITKNFVQMMGGSVTVSS 565

Query: 797 TPAKGTLIEIIFPL-YDTSHPHDCI 820
               G++  +  P  Y+  +  + +
Sbjct: 566 EIGAGSVFTVDLPFSYEPENESEIV 590


>gi|325962315|ref|YP_004240221.1| histidine kinase [Arthrobacter phenanthrenivorans Sphe3]
 gi|323468402|gb|ADX72087.1| histidine kinase [Arthrobacter phenanthrenivorans Sphe3]
          Length = 551

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 78/417 (18%), Positives = 167/417 (40%), Gaps = 35/417 (8%)

Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK-----RKMEIEVMQLCSILEA 460
           +   SL +  +                 +  +++ +        R  + +   L ++L+ 
Sbjct: 158 DLARSLLLPVMMLGIGVSVSVLTHSMMRQQRELEEKDELLQASLRASQRQESLLNTVLDT 217

Query: 461 TSDGIAIINREGIILSTNR---AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
              G+  ++  G  +  NR   A  +L          +   +    +  + +      + 
Sbjct: 218 VHLGVLAVDAGGHDILMNRKQRANHELARPRDIADPNESQLLVFGPDRKTPVPVEERPVR 277

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSH 573
              L +T     +         ++    + +               D+++          
Sbjct: 278 RAVLGETFTDYLVWLGSGSGQRAVVTTARAMTDDDGAFAGSVIAFSDVTDLVN------- 330

Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
                    + K DF++ VSHE RTPLT+I+G+ E++         +    +    I R+
Sbjct: 331 -------ALAAKDDFVSSVSHEFRTPLTSILGYVEILLADE----PDESQRDMLEIIRRN 379

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693
              +L +V+DLL  S+  +G++ +  + V + E V  ++S  Q  A    ++++    + 
Sbjct: 380 SERLLTLVSDLLA-SR--NGQLIVTPQTVDVAELVRSSVSSAQPRAAAAGLVLKADTPDR 436

Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753
           +     D   + Q+  N++SNAI ++P GG+++++        +  RV DTG+GM+  + 
Sbjct: 437 L-EAHVDGARISQVLDNLVSNAIKYSPGGGRVLVTLAQED-GHLECRVTDTGMGMSPEDA 494

Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            +    F +    ++    G GLGLP++KA++DA+ G   + ST  +GT      P+
Sbjct: 495 SEVFAKFFRASTVRRTAIPGVGLGLPISKAIIDAHGGTIAVHSTLGEGTTFTFRVPV 551


>gi|255036274|ref|YP_003086895.1| PAS/PAC sensor signal transduction histidine kinase [Dyadobacter
           fermentans DSM 18053]
 gi|254949030|gb|ACT93730.1| PAS/PAC sensor signal transduction histidine kinase [Dyadobacter
           fermentans DSM 18053]
          Length = 798

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 93/798 (11%), Positives = 236/798 (29%), Gaps = 66/798 (8%)

Query: 60  ESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLC 119
            SV      +SE  F        V           ++  ++   + +     +++G  L 
Sbjct: 18  PSVPANPSYESETKFRDTVKQAPVGMAILRGEDFMVEMANDAYLRIVDRTENEIVGKSLF 77

Query: 120 DVSDILHIDPNNHIGDLLKRQNTWYG--KTTLWPIEGTNLYVPIDLAALPIYSRNREFSG 177
                +       + ++L     ++G          G       +    P++        
Sbjct: 78  TGLPEVREYVEPVLLNVLHTGIAYHGNEFEVTLRRFGQPALCYFNFVYQPLFEDGG--DA 135

Query: 178 FRGFGIV-HVNRVDNDPRALGKRLDKKFSHLH---EIKKGHSSVEKEKYDIFSQQSPPPH 233
             G  +V          +   +  + +F +L    +  K           I ++      
Sbjct: 136 ASGVMVVATEVTQQVLSKQALQSSENQFRNLVTQSQFAKAIFKGRDLVISIANESMLNIW 195

Query: 234 LRMKNKVSS--LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ---- 287
            R  ++V    L + +         +    + +      E E    ++     KK     
Sbjct: 196 RRGLDEVVGKRLVDVFPELKGQKFLDLLDEVYTTAKIYRENEAIAYVDGPGGLKKHCLDF 255

Query: 288 YFGTLQNNSKESFEYLSHRNHPS----LSAYFDEGENLTPETVDKCPIPFF-VYSHGNLF 342
            +  +          ++  N  +    L   F+E         +   +  + +       
Sbjct: 256 QYAPIFELDGSVSGIMASVNDVTDKVMLRQQFEETATRLSMATEGTRLAIWDLNLQTREV 315

Query: 343 YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT 402
             +    ++  Y     +        +    + +         L   +       AR   
Sbjct: 316 IHSGRLAVIFGYDEATVLSHPQMREQVHPEDRQAIVEKAFQAAL---ETGIYYYEAR--- 369

Query: 403 IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
           I    ++   +        +         G   +  D + ++  ++    +  ++ ++  
Sbjct: 370 IIHPDQSVHWVRTQGKVFFDDNHVPQRMLGTMMDITDRKESELALKTSEGKFRTLADSLP 429

Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522
             +   +  G +   NR++ +  G+  E+++R+ +   +     +       + +     
Sbjct: 430 QFVWTADPGGNLNYFNRSMLRYSGHSGEEMVRQGWLELVHPEDRAESLLLWAKAVQEG-- 487

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDI-----------SEWKQE 567
                       + +    +        +      +  T  DI           ++ ++ 
Sbjct: 488 SDFAFEHRLKRADGEYRWYQCRAIPQRNADGVIEMWVGTSLDIHDNRLFIDQLETKVQER 547

Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
             +L+ A     + +   + F    SH+++ PL  I  F+  I       L   R  +Y 
Sbjct: 548 TQQLTVANDELVRTNMELAQFAYVASHDLQEPLRKIQTFATRILETENDNLS-ERGKDYF 606

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
             +  S   +  ++ DLL  S+  +     H E   L+  +      +      +  +I 
Sbjct: 607 VRMQASSTRMQQLIVDLLAFSR--ANVAEKHLENADLNLVLQNVKEQLSHIIQTENAVIT 664

Query: 688 TS-FANNIPRILADLRSVKQIALNILSNAIHFTPSGG--QIIISTTHTSNEEV------- 737
           +    +    +       +Q+  N+++NA+ F   G    I I +   +   +       
Sbjct: 665 SDNLPHRHVIVY----QFEQLFTNLIANALKFIGPGRDPVIDIRSGMVAGAAIPLAGADA 720

Query: 738 -----ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
                 +   D G+G      ++  + F ++ N  +   EGTG+GL + K +V+ + G  
Sbjct: 721 AKNYQFISFADNGIGFEPQYKDRIFQVFQRLHN--RAAYEGTGIGLAICKKIVENHKGLI 778

Query: 793 YIFSTPAKGTLIEIIFPL 810
                P  G+   I  P+
Sbjct: 779 DAVGKPGVGSTFIIYLPV 796


>gi|218548320|ref|YP_002382111.1| sensory histidine kinase AtoS [Escherichia fergusonii ATCC 35469]
 gi|218355861|emb|CAQ88476.1| sensory histidine kinase in two-component regulatory system with
           AtoC [Escherichia fergusonii ATCC 35469]
          Length = 608

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 82/371 (22%), Positives = 159/371 (42%), Gaps = 28/371 (7%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
              +         I+E  +D +  I+R+G +++ N A   + GY  ++++ +P+      
Sbjct: 254 AEALRESKTLNDLIIENAADAVIAIDRQGDVITMNPAAEAITGYKRQELVGQPYATLFAN 313

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMH 559
                    L  +        LE    G     + + +     ++           +   
Sbjct: 314 THFYS--PVLDTLAHGIEHMALEISYPGRD---RTIEISATTSRIHDGHGEMIGALVIFS 368

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           D++  K+ + +L+  +++A        + +A V+HE+R PLTAI G+ ++I+ Q      
Sbjct: 369 DLTARKESQRRLAQTERLAT-----LGELMAGVAHEVRNPLTAIRGYVQIIRQQ----TP 419

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
            P + EY + +    + +  ++  LLD S+    +    ++ V L   + E + L Q   
Sbjct: 420 QPEHQEYLSIVLNEIDSINKVIQQLLDFSRPRKSQ----WQQVYLKALIEETLILAQTSG 475

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
            + RI   T    ++  I+AD   +KQ+ LN+L NA+    + G+I I T   +  +  +
Sbjct: 476 VQARIDFITELDPSLTAIVADRELLKQVILNMLINAVQAITARGEIRIRTWMYTANQQAI 535

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            + D G G+      K   PF     S      GTGLGL L++ +++A+ G   + S P 
Sbjct: 536 TIEDNGCGIDLSLQGKIFDPFFTTKAS------GTGLGLALSQRIINAHQGDIRVASLPG 589

Query: 800 KGTLIEIIFPL 810
            G    +I P+
Sbjct: 590 CGATFTLILPI 600



 Score = 46.9 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 28/228 (12%), Positives = 55/228 (24%), Gaps = 7/228 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G +  ++       G    +++G     +    H    + + D L           
Sbjct: 278 IDRQGDVITMNPAAEAITGYKRQELVGQPYATLFANTHF--YSPVLDTLAHGIEHMALEI 335

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGF-RGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
            +P  G +  + I      I+  + E  G    F  +   +      A  +RL      +
Sbjct: 336 SYP--GRDRTIEISATTSRIHDGHGEMIGALVIFSDLTARKESQRRLAQTERLATLGELM 393

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
             +   H             Q              L+      D + K  +  L  S   
Sbjct: 394 AGV--AHEVRNPLTAIRGYVQIIRQQTPQPEHQEYLSIVLNEIDSINKVIQQLLDFSRPR 451

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
               Q+ +    + +         +Q       E              
Sbjct: 452 KSQWQQVYLKALIEETLILAQTSGVQARIDFITELDPSLTAIVADREL 499


>gi|219849497|ref|YP_002463930.1| multi-sensor signal transduction histidine kinase [Chloroflexus
           aggregans DSM 9485]
 gi|219543756|gb|ACL25494.1| multi-sensor signal transduction histidine kinase [Chloroflexus
           aggregans DSM 9485]
          Length = 875

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 145/747 (19%), Positives = 261/747 (34%), Gaps = 91/747 (12%)

Query: 130 NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPI--------------DLAALPIYSRNREF 175
           +  + D L     +  +   W  E       +                 A P+Y R  +F
Sbjct: 158 DEAVIDQLLTLEAFDPRVRPWYTEARAAGTTVWTAPYIDANTGLLATTCARPLYDRQGQF 217

Query: 176 SGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR 235
            G   F +            L   + +    +     G++ +     D+  +       R
Sbjct: 218 IGVVAFDL------------LLNTIQQDLLTVDVGSNGYAFLVNANGDVVVRPDMQAVGR 265

Query: 236 MKN-KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294
                 +      A+ D     E+     S    + EQ     +     T   +   L  
Sbjct: 266 WDQPYRTENLLNAANADLRTVAERMVARQSGVQLIQEQGQVSYVAYAPITTAGWSVALVI 325

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKY 354
            + E  E           +       L    +    +   +    +L + N   +L    
Sbjct: 326 PADEIDEPAIATGARLSESQSRLWNQLVATLLLIIMLISLLGLLLSLSFTNRISVLREGV 385

Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD---------RTCIAASARLHTIQW 405
           ++V      G LS  L      +   +       +D                A L+ +  
Sbjct: 386 RAVAA----GDLSQRLPPAGNDEIGQLVAAFNQMTDTLQSKIAELEENARQLATLNAVSN 441

Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM-------EIEVMQLCSIL 458
             ++ L+   +         E    +      VD  + +          E +  Q  ++ 
Sbjct: 442 ELKSILSWPVLLETIPKLVCERFGFDRAVLYLVDGDVLRAVSASFSPGNEWQAQQFLAVA 501

Query: 459 EATSDGI--------AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
            A    I         + +R+ II+  N                +   V   +   S   
Sbjct: 502 NANPLRIDGGSVEADVVRSRKAIIID-NP--------------WEHPRVDKAKQAISASR 546

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK-- 568
            Y+   +       +  I+      ++ +  R   + L F+S   LT+ ++  + + +  
Sbjct: 547 SYVQAPIFGRNDTVIGIISADYKLSQRPVQARDAAQLLTFASMVGLTIENVQLYNELERQ 606

Query: 569 -----NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
                 +L  A + A+     KSDFLA +SHE+RTPL AIIGFS V+ +    PL  P  
Sbjct: 607 VAQRTEELRAALERAQLADRRKSDFLASISHELRTPLNAIIGFSTVLLDDTEQPLT-PTQ 665

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            E    I+R+G  +L ++N+LLD+++IE+G +NL    V L +  +E    VQ     + 
Sbjct: 666 REDVQSINRNGRFLLHLINELLDLARIEAGHLNLELGSVDLCQVTAEVCDTVQTLLRNRP 725

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN--------E 735
           + +R +    +P ++AD   ++QI  N+LSNAI FT  G  I +S               
Sbjct: 726 VTLRNALPMVLPDVVADSDRLRQILFNLLSNAIKFTERG-TITVSAQVLDEVNEDGKLCR 784

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            V + V DTG+G+ +   +     F QI   +     GTGLGL + + +V+A  G+ ++ 
Sbjct: 785 YVAVSVSDTGIGIPHERQQDIFGEFVQIHGRRSR-LGGTGLGLAITRKLVEAQGGRIWVD 843

Query: 796 STPAKGTLIEIIFPLYD---TSHPHDC 819
           S P  G+      P+     T+ P + 
Sbjct: 844 SIPGIGSTFTFTLPVAQPAFTTEPDEA 870


>gi|312978125|ref|ZP_07789870.1| sensor histidine kinase [Lactobacillus crispatus CTV-05]
 gi|310895100|gb|EFQ44169.1| sensor histidine kinase [Lactobacillus crispatus CTV-05]
          Length = 558

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 83/366 (22%), Positives = 161/366 (43%), Gaps = 40/366 (10%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            ++     +  ++ +A  +G+ +I+    +L +N AV  L G    ++L       ++Q+
Sbjct: 215 EQLHHREKEFKTVTDAMQEGLILIDLNDQVLLSNPAVVSLLGSKSSEVLPDDVKKIIDQD 274

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISE 563
             +V    +                    +E + + +              S+ + D++E
Sbjct: 275 KRTVHTEGI------------------VEREGRNIQISASPIFSRKVLKGTSILVVDVTE 316

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
              E+                + +F A VSHE++TPL +I+G +E+++N        P  
Sbjct: 317 EYHEEQV--------------RREFTANVSHELKTPLQSIMGSAELLENNLVKEDDRPA- 361

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
             +   I  S   +L +++D++ +S ++          ++L   V+EAI  +Q  A++  
Sbjct: 362 --FYRKIHESSAQLLTLIDDIIRLSHLDEN-PEFEEVRMNLKSPVTEAIEALQASADKHE 418

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
           I ++ + A+    I A+ R V +IA N++ NAI +   GGQ+ I+       + ILRV D
Sbjct: 419 IELKAALADT--EIKANFRLVYEIAYNLIDNAIRYNNPGGQVKIAVK-EVRGQAILRVSD 475

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TG+G+      +  + F ++  S   +  GTGLGL + K  V    G   + S   KG+ 
Sbjct: 476 TGIGIPLEAQNRIFERFYRVDKSHNRKTGGTGLGLSIVKHAVQQCHGTIRLESELGKGST 535

Query: 804 IEIIFP 809
             ++FP
Sbjct: 536 FTVVFP 541


>gi|196037659|ref|ZP_03104970.1| sensor histidine kinase/response regulator [Bacillus cereus
           NVH0597-99]
 gi|196031901|gb|EDX70497.1| sensor histidine kinase/response regulator [Bacillus cereus
           NVH0597-99]
          Length = 896

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 79/338 (23%), Positives = 147/338 (43%), Gaps = 18/338 (5%)

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            +D++ +            +    +  +L      T E        + +   L++  ++L
Sbjct: 395 HQDLIHQTVDNLGLTIHSIMGRMRIQTLLHESQAMTEELQVQSEELQTQAEELQMQAEEL 454

Query: 549 PFSSCYSLTMHDISEWKQEKN-----KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
             ++    +  + +E K         +L        + S +KS+FLA +SHE+RTPL +I
Sbjct: 455 RTTNEQLESRTEEAEQKTADLQITKLELEEKASELLRSSKYKSEFLANMSHELRTPLNSI 514

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +  SE++K      L +    E A  I  SG  +L ++ND+LD+SK+E+GK+++ FE  +
Sbjct: 515 LLLSEMLKENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIFEATN 573

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSG 722
           + +  +         A +K +      ++ IP +   D + ++QI  N+LSNA  FT  G
Sbjct: 574 ISDMAASMHQNFLHIAAQKNVKFTVEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKG 633

Query: 723 GQ------IIISTTHTS-----NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
                   I  S           + + + V+DTG+G+   + +   + F Q   +   + 
Sbjct: 634 SVSLHFDSIETSNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGATIRKY 693

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            GTGLGL + K       G   + S   +G+   +  P
Sbjct: 694 GGTGLGLSICKEFARLLGGWITLQSHVGEGSTFTVYIP 731


>gi|228919830|ref|ZP_04083188.1| hypothetical protein bthur0011_8510 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228839846|gb|EEM85129.1| hypothetical protein bthur0011_8510 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 896

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 80/341 (23%), Positives = 153/341 (44%), Gaps = 24/341 (7%)

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            +D++++            +    +  +L      T E        + +   L++  ++L
Sbjct: 395 HQDLIQQTVDNLGLTIHSIMGRMRIQTLLHESQAMTEELQVQSEELQTQAEELQMQAEEL 454

Query: 549 PFSSCYSLTMHDISEWKQEK-----NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
             ++    +  + +E K        ++L        + S +KS+FLA +SHE+RTPL +I
Sbjct: 455 RTTNEQLESRTEEAEQKTADLQITKSELEEKASELLRSSKYKSEFLANMSHELRTPLNSI 514

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +  SE++K      L +    E A  I  SG  +L ++ND+LD+SK+E+GK+++ FE  +
Sbjct: 515 LLLSEMLKENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIFEATN 573

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSG 722
           +++  +         A +K +      ++ IP +   D + ++QI  N+LSNA  FT +G
Sbjct: 574 INDMAASMHQNFLHIAAQKNVEFTIEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKFTETG 633

Query: 723 GQIIISTTHTS--------------NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
               +S    S              N+ + + V+DTG+G+   + +   + F Q   +  
Sbjct: 634 S---VSLHFDSIETTNLSPDMQSISNDWMKISVKDTGIGIAKEQHQLIFEAFQQADGATI 690

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            +  GTGLGL + K       G   + S   +G+   +  P
Sbjct: 691 RKYGGTGLGLSICKEFARLLGGWITLESHVGEGSTFTVYIP 731


>gi|170746837|ref|YP_001753097.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium radiotolerans JCM 2831]
 gi|170653359|gb|ACB22414.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium radiotolerans JCM 2831]
          Length = 519

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 91/534 (17%), Positives = 191/534 (35%), Gaps = 31/534 (5%)

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYK 355
            S      R    L        +    T+D   I  +      G    A+P+   L    
Sbjct: 2   RSMTDTVDRLSADLERDVTRASDELRRTLDDVGICVWSLDIETGRAT-ASPTCAHLFGVP 60

Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
                           A    ++   +   + R+ R   +  A    ++ +  +   +  
Sbjct: 61  P-----ERLTTFADSQALVHPEDRQARADAIQRALREGGSYEADYRVVRPDG-SVCWLRS 114

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
                 +         G+     + +  +  +      L SIL+   + + +I+  G+I 
Sbjct: 115 RGRVSFDDAGRPARHRGVVLSIDEQKRAEEDIRAREAHLRSILDTVPEAMVVIDETGLIH 174

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL--EKITLGST 533
           S + A  +LFGY   + + +   + + +      + YL        R  +   ++  G  
Sbjct: 175 SFSAAAERLFGYAAGEAVGRNVRILMPEPMQGEHDGYLDRYRRTRERHIIGTNRVVTGRR 234

Query: 534 KEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESS--HKSDFL 589
           ++     + + I ++       ++  ++D++E ++ + +L   +      S      +  
Sbjct: 235 RDGSTFPMELAIGEMRSGEQVYFTGFINDLTEHQRTQARLQELQSELAHVSRLSAMGEMA 294

Query: 590 ARVSHEIRTPLTAIIGFSEVIKN--QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           + ++HE+  PL AI  +++  +    R  P    R +E  +           I+  L + 
Sbjct: 295 SALAHELNQPLGAIANYTKGCRRLLARADPEAIARTMEVLDKTAEQALRAGQIIRRLREF 354

Query: 648 -SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706
            ++ E+ K     EPV     + EA +L  + A E+ I  R +       +LAD   V+Q
Sbjct: 355 VARGEAEK---RVEPV--ARLIEEASALALVGAREQGIAARVAVDPRAGCVLADRVQVQQ 409

Query: 707 IALNILSNAIHFTPSGGQ--IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764
           + +N+L NA      G +  + +       E V + V DTG G+     ++  +PF    
Sbjct: 410 VLVNLLRNAREAMHQGDRRELTVEARSVDGETVEITVSDTGPGIAAEVADRLFQPFVTTK 469

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
            S      G G+GL + + +V+A+ G+  +      G    +         P D
Sbjct: 470 RS------GMGVGLSICRTIVEAHGGRLDVERNETGGATFRLTLQAAHVGDPPD 517



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 41/402 (10%), Positives = 95/402 (23%), Gaps = 36/402 (8%)

Query: 86  TWNIDAH-GYLKEISEELPKTIGNYAFKMIGMRLCD---VSDILHIDP-NNHIGDLLKRQ 140
            W++D   G     S       G    ++      D   +          + I   L+  
Sbjct: 37  VWSLDIETGRAT-ASPTCAHLFGVPPERLT--TFADSQALVHPEDRQARADAIQRALREG 93

Query: 141 NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
            ++     +   +G+     +       +         R  G+V             +  
Sbjct: 94  GSYEADYRVVRPDGS--VCWLRSRGRVSFDDAGRP--ARHRGVVLSIDEQKRAEEDIRAR 149

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP-------------HLRMKNKVSSLTEYY 247
           +     + +       V  E   I S  +                ++R+        E+ 
Sbjct: 150 EAHLRSILDTVPEAMVVIDETGLIHSFSAAAERLFGYAAGEAVGRNVRILMPEPMQGEHD 209

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
            + D   +T +  ++ +       + D  T  +     +   G     +    +   H+ 
Sbjct: 210 GYLDRYRRTRERHIIGTNRVVTGRRRDGSTFPMELAIGEMRSGEQVYFTGFINDLTEHQR 269

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYSH-----GNLFYANPSFLLLTKYKSVDDIEI 362
             +                    +   +        G +         L      + I  
Sbjct: 270 TQARLQELQSELAHVSRLSAMGEMASALAHELNQPLGAIANYTKGCRRLLARADPEAIAR 329

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
                 +LD        A + +   R       A  R+  +    E + A+  +   +  
Sbjct: 330 ---TMEVLDKTAEQALRAGQIIRRLREFVARGEAEKRVEPVARLIEEASALALVGAREQG 386

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
                           D    ++ +   V  L +  EA   G
Sbjct: 387 IAARVAVDPRAGCVLADRVQVQQVL---VNLLRNAREAMHQG 425


>gi|86608466|ref|YP_477228.1| sensor histidine kinase [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86557008|gb|ABD01965.1| sensor histidine kinase [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 587

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 80/254 (31%), Positives = 132/254 (51%), Gaps = 8/254 (3%)

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            +Q+  +L  A+  AE  +  KS FLA  SHE+RTPL  IIGF +++ +           
Sbjct: 299 LRQKNKELEQARAQAESANQLKSQFLANTSHELRTPLNGIIGFIKLVLDGM--AENREEE 356

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
           +++     RS   +L ++ND+LDI+KIE+GKM L F+P  L     +  +   L A++K 
Sbjct: 357 LDFLQEAYRSALHLLALINDVLDIAKIEAGKMQLEFQPCDLRALFKDVEAKTSLQASQKG 416

Query: 684 ILIRTSFANNIPRIL--ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN--EEVIL 739
           + +     N   +IL   D + + Q+ LN++ NAI FTP G  + +             +
Sbjct: 417 LQLSFHLPNTSDQILLLGDYQRLLQVMLNLVGNAIKFTPKGS-VTVRADILPGNPGLARI 475

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TP 798
           RV DTG+G++  + +K  + F Q+  S   +  GTGLGL +++ +V+A  G+   +S   
Sbjct: 476 RVIDTGIGVSLEKQQKLFQAFTQVDGSTTRQYGGTGLGLAISQRLVEAMGGEINFYSLGE 535

Query: 799 AKGTLIEIIFPLYD 812
             G+ +    PLY 
Sbjct: 536 GLGSTVTFTVPLYR 549


>gi|86144789|ref|ZP_01063121.1| hypothetical two-component sensor [Vibrio sp. MED222]
 gi|85837688|gb|EAQ55800.1| hypothetical two-component sensor [Vibrio sp. MED222]
          Length = 808

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 74/254 (29%), Positives = 123/254 (48%), Gaps = 12/254 (4%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I   +Q+  +L  AK  AE  + +KS+FLA +SHEIRTP+  IIG S ++          
Sbjct: 219 IERIRQQYQELEKAKDTAEVANRNKSEFLANMSHEIRTPMNGIIGLSSLLSEMDM----P 274

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
               EY + ++ S   +LD++ND+LD SKIE+G++ L  EP+ +    ++  S  ++ A 
Sbjct: 275 KEQKEYVDMLNTSSLTLLDLINDILDYSKIEAGRLELQQEPMKMMGIAADVESTFRVKAE 334

Query: 681 EKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS------ 733
           +K +  + +    IP  ++ D   ++Q+  N++ NAI FT  G  +++S           
Sbjct: 335 QKGLKFQLAIDPKIPTMVIGDGTQLRQVLNNLVGNAIKFTEHG-HVMLSLRLEEVIEPEQ 393

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
              V   V D+G+G+   + +     F Q   S      GTGLGL +   +V     K  
Sbjct: 394 KLRVKFEVTDSGIGIAEDKQQSVFDKFQQADGSTTRIYGGTGLGLTICDKIVTLMGSKLE 453

Query: 794 IFSTPAKGTLIEII 807
           + S   KG+     
Sbjct: 454 LTSVVGKGSTFYFT 467


>gi|167623839|ref|YP_001674133.1| histidine kinase [Shewanella halifaxensis HAW-EB4]
 gi|167353861|gb|ABZ76474.1| histidine kinase [Shewanella halifaxensis HAW-EB4]
          Length = 818

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 73/247 (29%), Positives = 133/247 (53%), Gaps = 8/247 (3%)

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + +  L  A++  E+ +S KS FLA +SHEIRTPL  IIG +E++ + +   +      +
Sbjct: 312 RMEQGLIFAREKEEQANSAKSSFLANMSHEIRTPLNGIIGMTEILTDSKLTAI----QKD 367

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           Y   I+ S   +L ++ND+LD+SKIESG + +     ++ E + + ++L+   A ++ I 
Sbjct: 368 YLATINSSSQTLLMLINDILDLSKIESGHLEICPHTCNIKEVIYDTVALIAPKAQQRSIE 427

Query: 686 IRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRV 741
           +R +   NIP  + AD + ++Q+ +N+ SNA+ FT SG    ++ +    T    ++  V
Sbjct: 428 MRITIDQNIPCYVRADEQKLRQVLMNLASNAVKFTHSGSVSFKLQLEVETTDTICILFSV 487

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
           +DTG+G+   +  +  + F Q   +  +   GTGLGL ++  +V    G+  I S+   G
Sbjct: 488 KDTGIGIDENKHMQVFEEFQQEERNTSVEYGGTGLGLSISTKLVRMMGGEIAINSSKGLG 547

Query: 802 TLIEIIF 808
           +      
Sbjct: 548 SEFYFYL 554


>gi|163847652|ref|YP_001635696.1| histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|222525511|ref|YP_002569982.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
 gi|163668941|gb|ABY35307.1| Histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|222449390|gb|ACM53656.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
          Length = 876

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 147/775 (18%), Positives = 274/775 (35%), Gaps = 87/775 (11%)

Query: 93  GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPI 152
           GY++ +   L + + +     IG    +   I+  D    I  LL    ++  +   W +
Sbjct: 123 GYVRRVIPLLREIVASNPLVNIGYIALETGGIIAFDNEAVIDQLL-TLESFDPRVRPWYV 181

Query: 153 EGTNLYVPI--------------DLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
           +  +    +                 A P+Y +  +F G   F +            L +
Sbjct: 182 KARDAGTTVWTEPYVDANTGLLATTCASPLYDQQGQFIGVVAFDL------------LLE 229

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
            + +    +     G++ +     D+  + +   + R  ++           +  L+   
Sbjct: 230 TIQQDLLTVDVGSSGYALLINANGDVVVRPNMQANGRW-DQPYQTENLLNSTNTDLRAVA 288

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
             ++  +      QED     +          ++      + E  +            + 
Sbjct: 289 EQMVARQSGVQLIQEDGQASYVAYAPITTAGWSV-ALVIPANEIDAPAIATGQRLSESQS 347

Query: 319 ENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
                  V    I   +   G L   + +  +    + V  +   G LS  L    + + 
Sbjct: 348 RLWNQLVVVLLMIIISIGFLGLLLSFSFTSRISVLREGVQAVAG-GDLSRRLPVAGIDEI 406

Query: 379 NAIKPVMLYRSD---------RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
             +       +D                A L+ +    ++ L+   +         E   
Sbjct: 407 GQLVDAFNRMTDTLQSKIVELEENARQLATLNAVSNELKSILSWPVLLETIPKVVCERFG 466

Query: 430 QNGIEPEDVDTRINKRKM-------EIEVMQLCSILEATSDGI--------AIINREGII 474
            +      VD  + +          E +  Q  ++  A    +         + +R+ II
Sbjct: 467 FDRAVLYLVDGDVLRAVSASFGPGNEDQAQQFLAVANAHPLRVDGGSVEADVVRSRKAII 526

Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
           +  N                +   V   +   S    Y+   +       +  I+     
Sbjct: 527 VD-NP--------------WEHPRVDKIKQAASASRSYVQAPIFGRNDVVIGIISADYKL 571

Query: 535 EEKLLSLRIIIKKLPFSSCYSLTMH------DISEWK-QEKNKLSHAKKIAEKESSHKSD 587
            ++ +  R   + L F+S   LT+       D+ +   +   +L  A + A+     KSD
Sbjct: 572 SQRPVQARDAAQLLTFASMVGLTIENVQLYNDLEQQVARRTEELRVALERAQLADRRKSD 631

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           FLA +SHE+RTPL AIIGFS V+ +    PL  P   E    I+R+G  +L ++N+LLD+
Sbjct: 632 FLASISHELRTPLNAIIGFSTVLLDDTDQPLT-PTQREDIQSINRNGRFLLHLINELLDL 690

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707
           ++IE+G +NL    V+L    SE    VQ     + + +R +    +P I AD   ++QI
Sbjct: 691 ARIEAGHLNLEISNVNLYNITSEVCDTVQTLLRNRPVTLRNAVPVTLPDIAADGDRLRQI 750

Query: 708 ALNILSNAIHFTPSGGQIIISTTHTS--------NEEVILRVRDTGVGMTNYELEKAMKP 759
             N+LSNAI FT  G  I +S                V + V DTG+G+      +    
Sbjct: 751 LFNLLSNAIKFTERG-TITVSARVHDEVNEDGKVGRYVAVSVSDTGIGIPLERQHEIFNE 809

Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           F QI   +     GTGLGL + + +V A  G+ ++ STP  G+      P+   +
Sbjct: 810 FVQIHGRRSR-LSGTGLGLAITRKLVLAQGGRIWVDSTPGIGSTFTFTIPVAQPA 863


>gi|332712356|ref|ZP_08432283.1| PAS domain S-box protein [Lyngbya majuscula 3L]
 gi|332348830|gb|EGJ28443.1| PAS domain S-box protein [Lyngbya majuscula 3L]
          Length = 965

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 78/267 (29%), Positives = 136/267 (50%), Gaps = 5/267 (1%)

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
           +      E ++    L        + +  KS F++ +SHE+RTP+ AIIGFS+++  QR 
Sbjct: 674 MLARQNRELERRDASLKLQNLQLLEAARLKSQFVSTISHELRTPMNAIIGFSQLLLRQRQ 733

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
           G L + +  +    I  +   +L ++ D++D+SKIE+  + L  E + LD  + E I+  
Sbjct: 734 GSLTH-QQADIMERIVNNAQHLLTLIKDMIDLSKIEAVCLELTLESLHLDRLIKETINEF 792

Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
           +  A +K + +        P ++ D   ++QI +N++SN I FT  G ++ +     S +
Sbjct: 793 RCLAAQKDLGLYIQTNLKNPIVINDSLRLRQILVNLVSNGIKFTEMG-RVEVVVKEISTD 851

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            ++L VRDTG+G+   +LE   + F QI  +   +  GTGLGL + +++V    G   + 
Sbjct: 852 WLMLTVRDTGIGIAENDLEHIFEEFQQIDQTTTRKYSGTGLGLAITESLVKLMQGTITVE 911

Query: 796 STPAKGTLIEIIFPL---YDTSHPHDC 819
           S   KG+   + FP      T   HDC
Sbjct: 912 SKLGKGSTFHVKFPRRVKASTGDCHDC 938



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 36/269 (13%), Positives = 77/269 (28%), Gaps = 14/269 (5%)

Query: 331 IPFFVYS-HGNLFYANPSFLLLTKYKSVDDIE---IAGGLSTLLDAPKLSDNNAIKPVML 386
           I   V S       A+          S+D I           L    ++ D     PV++
Sbjct: 33  IAVAVDSKSARSIIASRCANSSLTQPSLDCILLDYHLPDGDGLTLVKEIRDAGIEVPVIV 92

Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
                           +  +  +   +T       N          +   + +  +  ++
Sbjct: 93  LSDQGNEQINEQIAVELMKSGASDY-LTKSQISSENLLRSLSNAVRLYRAEREAAVAHQR 151

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP-------FTV 499
           ++    +   +LE ++DGI   N     L  N    +L G   E I +            
Sbjct: 152 LKESEERYRLVLEGSNDGIWDWNLITKQLYCNDRFYELTGLSPEQIGKYHHNFSPDVLFN 211

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY--SLT 557
            L  +    +   +       L   +E     +  E++  + R   +       +  S  
Sbjct: 212 LLNCSDLLKVTKAVASYQQDYLELDVEFNLPCAFGEDRYCTARGKAQLNDQGVPFRMSGV 271

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKS 586
           + DI+E K+ +       + +   S+   
Sbjct: 272 ITDITEQKRAEESQRFLAEASAVLSASLD 300


>gi|222086249|ref|YP_002544781.1| two-component sensor histidine kinase protein [Agrobacterium
           radiobacter K84]
 gi|221723697|gb|ACM26853.1| two-component sensor histidine kinase protein [Agrobacterium
           radiobacter K84]
          Length = 509

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 100/249 (40%), Positives = 153/249 (61%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I+E +  K+    A++ AE+ +  KS FLA +SHE+RTPL AI+GFSEV+  +  GPL N
Sbjct: 236 IAELEVAKSMSDEARRRAEEANLAKSRFLASMSHELRTPLNAILGFSEVMSAEVMGPLNN 295

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
             Y EY   I RSG  +L+++N++LD+S+IE+GK  L+ E +SL +   + I +VQL A 
Sbjct: 296 ATYREYTTDIHRSGQHLLNLINEILDLSRIEAGKYELNEEAISLLDVAEDCIGMVQLRAR 355

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
            K I I   F   +P + AD +S++Q+ LN+LSNA+ FTP GG+I +    TS     + 
Sbjct: 356 GKNISISPQFELQLPSVWADEKSIRQVILNLLSNAVKFTPQGGEITVKVGWTSGGGQYVA 415

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           +RD G G+   E+   +  FGQ   + +   +GTGLGLP+ +A++  + G+F + S   +
Sbjct: 416 IRDNGPGIPEEEIPVVLSAFGQGSIAIKSAEQGTGLGLPIVQAILAKHDGQFMLKSKLRE 475

Query: 801 GTLIEIIFP 809
           GT +  I P
Sbjct: 476 GTEVIAILP 484


>gi|39726383|gb|AAR30134.1| putative histidine kinase TCS1p [Gibberella moniliformis]
          Length = 685

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 114/504 (22%), Positives = 203/504 (40%), Gaps = 33/504 (6%)

Query: 322 TPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
             + +D  P+P  V S    +  A+   L     K  + +      + L         + 
Sbjct: 21  MEDILDLLPVPTLVVSPSYRIQRASLGLLEAWGRKR-EVLVGQDLFTALYHGSPTERFDR 79

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
           I  V          A  AR   +      +  +++          + +    IE E    
Sbjct: 80  IPFVYAI-----ETALEARALRLCHAAYIANGISWTARIMPVHKGDELLCLVIEWEQAKP 134

Query: 441 RINKRKMEIEVMQL------CSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDIL 493
                  EI    L        +++A  D  I +++  G +++ N       GY  E+I+
Sbjct: 135 HTTTVNGEITQSWLPIDDAFRILVQAVKDYAIFLLDTRGNVMTWNTGAELNKGYKKEEII 194

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS- 552
            K FT F  Q           E+        +E       K+       ++I  +  +  
Sbjct: 195 GKHFTKFYGQEDIQS-RKPERELEICLREGRVEDEGWRYRKDGSRFWANVVITAIYKNDI 253

Query: 553 --CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
              +     +++E K+ + +L+      E+ +  K+DFLA +SHEIRTP+  ++    ++
Sbjct: 254 HVGFGKVTRNLTERKEAELRLT---AAYEESTKLKNDFLANMSHEIRTPMHGVLSACSLL 310

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
            + R          E AN I  SG+++L I+ND+LD SKI +G   +  E + +   ++ 
Sbjct: 311 LDSRL----TEEQRETANMIQESGHVLLRIINDILDYSKIAAGTFPIRNERLDIANVITS 366

Query: 671 AISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
           A+   Q       + ++   ++N+P     D    +QI  NIL NA+ FT  G  I +  
Sbjct: 367 AVRRAQTTVQP-GVSLKLELSSNLPKWAEGDALRYRQIFENILGNAVKFTEKG-YISVHA 424

Query: 730 THTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
           +  + +E    +   V DTG G+T  + ++  KPF Q+    Q R  GTGLGL +AK++V
Sbjct: 425 SLLAEDETSHTIQTEVWDTGHGITEVDAKELFKPFTQLDTPDQKRRPGTGLGLSIAKSLV 484

Query: 786 DANMGKFYIFSTPA-KGTLIEIIF 808
           +   G       P  +G++    F
Sbjct: 485 ELMGGNIGYKPNPQRQGSIFWFSF 508



 Score = 41.9 bits (97), Expect = 0.45,   Method: Composition-based stats.
 Identities = 36/306 (11%), Positives = 82/306 (26%), Gaps = 37/306 (12%)

Query: 59  QESVSNTNYLDSENTFVFDPIPRTVRF---------TWNIDAHGYLKEISEELPKTIGNY 109
           +++  +T  ++ E T  + PI    R           + +D  G +   +       G  
Sbjct: 130 EQAKPHTTTVNGEITQSWLPIDDAFRILVQAVKDYAIFLLDTRGNVMTWNTGAELNKGYK 189

Query: 110 AFKMIGMRLCDVSDILHID--PNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALP 167
             ++IG           I         ++  R+     +   +  +G+  +  + + A+ 
Sbjct: 190 KEEIIGKHFTKFYGQEDIQSRKPERELEICLREGRVEDEGWRYRKDGSRFWANVVITAIY 249

Query: 168 IYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ 227
               +       GFG V   R   + +    RL   +    ++K    +    +      
Sbjct: 250 KNDIH------VGFGKVT--RNLTERKEAELRLTAAYEESTKLKNDFLANMSHEIRTPMH 301

Query: 228 QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287
                          L+      D  L  E+       + S           L+      
Sbjct: 302 -------------GVLSACSLLLDSRLTEEQRETANMIQESGHVLLRIINDILDYSKIAA 348

Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPS 347
               ++N   +    ++             G +L  E     P     ++ G+       
Sbjct: 349 GTFPIRNERLDIANVITSAVR-RAQTTVQPGVSLKLELSSNLPK----WAEGDALRYRQI 403

Query: 348 FLLLTK 353
           F  +  
Sbjct: 404 FENILG 409


>gi|119357584|ref|YP_912228.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium phaeobacteroides
           DSM 266]
 gi|119354933|gb|ABL65804.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium phaeobacteroides
           DSM 266]
          Length = 931

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 104/795 (13%), Positives = 240/795 (30%), Gaps = 76/795 (9%)

Query: 59  QESVSNTNYLDSENTFVFDPIPRTV-----RFTWNIDAHGYLKEISEELPKTIGNYAFKM 113
            E     + L+S       P          +F+W     G +  +S  + + +G  + + 
Sbjct: 28  DEQPKALDGLNSSEDQCLHPGSLLTGGSVYQFSWKNKLQGPVTFVSSNIQQLLGYTSDEF 87

Query: 114 I-GM-RLCDVSDILHIDP-NNHIGDLLKR-QNTWYGKTTLWPIEGTNLYVPIDLAALPIY 169
             G      +     +      +   ++R  +++  +  L   +GT     +    + + 
Sbjct: 88  TSGQISYGSLIYPDDLATFVEELHRSIERNIDSFEQEYRLRKKDGTVFR--VCDYTIVLR 145

Query: 170 SRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS 229
            +      + G+ I                    F  L +       +      +     
Sbjct: 146 DKKSNTLCYEGYII--DASTKTC-----------FEPLFDTIDDFLFIVDRDGLVIHSNE 192

Query: 230 PPPHL---RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKK 286
              +     +   V    EY+   D   +            +   +    T +      +
Sbjct: 193 AVKNRLGYSLDELVGKNIEYFFGDDQQKEIHDKIEGLLFGRNTSFRVPLLTRSGTAIPAE 252

Query: 287 QYFGTLQ--NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFY 343
                    N +          +         E E    +  +  P+P F    +G + Y
Sbjct: 253 TTIAKGNWNNRTVICCNSRDISDQIRQEQALIESERRFRDLTEMLPLPLFEADVNGMVTY 312

Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403
            N   +    Y   D           +      ++  +          + ++       +
Sbjct: 313 TNSQGVEAFGYTPEDLHRGVSVFKCCIPE----ESGIVSANFESMKAGSRMSTGNEYTAL 368

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM------EIEVMQLCSI 457
           + N     A+ +      N          I  +    +  +  +      E  V +L S+
Sbjct: 369 RKNNTTFPALLYSTPIIRNGLFAGARAIVI--DLTKLKKAESVLGNSRLQERMVRELQSL 426

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF--LEQNTPSVMNHYLTE 515
           ++     +  +N        +     L  Y  E+  ++ F     +      ++      
Sbjct: 427 IDNIPGAVYRVNSRNETTMLSMTGDFLLDYTREEFEKELFPSMAIIYPEDRDLVLTSNQS 486

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKN--KL 571
           + S+   + L    +      + +  R      P          + DI+E  + +   +L
Sbjct: 487 LRSVKRSEALVYRIVTKNGSVRWVEDRKTSAFSPDGMFLGIDGILFDITERIKAEENKQL 546

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
             ++    +           ++H+    LT ++G++E+               +Y + I 
Sbjct: 547 LESRLRKTQRLETIGTLAGGIAHDFNNILTPLLGYAEM---GLSSLSSESPLYDYFSEII 603

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
           ++     +++  +L  S+        +   VS+ + ++E++ L++       I I     
Sbjct: 604 QASERAKNLIAQILTFSRPG----ESNPAVVSVQDIIAESLKLLRPSIPS-TITIVQDLD 658

Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPS-GGQIIISTT---------------HTSNE 735
            +   ILAD   + Q+ +N+ +NA       GG + I                  H    
Sbjct: 659 FSCRNILADPSQIHQVIVNLCTNAFQAMEESGGVMTIGLREITPDKALMAEFPELHEHES 718

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            + L + DTG GM    +E+  +PF    + +    +GTGLGL +   ++ +  G   + 
Sbjct: 719 YLQLSISDTGKGMDEKTMERIFEPFFTTKSGR----KGTGLGLSVVHGIISSYNGHISVV 774

Query: 796 STPAKGTLIEIIFPL 810
           S P KGT   +  P+
Sbjct: 775 SRPEKGTSFRVYLPV 789


>gi|219849092|ref|YP_002463525.1| histidine kinase [Chloroflexus aggregans DSM 9485]
 gi|219543351|gb|ACL25089.1| histidine kinase [Chloroflexus aggregans DSM 9485]
          Length = 556

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 90/385 (23%), Positives = 162/385 (42%), Gaps = 37/385 (9%)

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--NTPSVMN 510
           +   ++E       I++R+  I      +  L G   +  +  P T  + +     S + 
Sbjct: 23  EQRVLMET-GSAYLIVDRDLRIHGV-GGLVSLIG--DDSPIGLPLTEVIPELFGNESALA 78

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQ 566
             L   L       + +       +  +  L ++           +     + D +    
Sbjct: 79  DILNGQLDRLSLPLINRSL----PDGSVRYLDLLTVPHTDDDGTIVGLLQIVVDTTNRSM 134

Query: 567 EKNKLSHAKKIAE---------------------KESSHKSDFLARVSHEIRTPLTAIIG 605
            +  L+  +                         + +  K +FLA +SHE+RTPLTAI+G
Sbjct: 135 TEQLLTQRRNELHLLKDRIQRQNVELARINAGLLRVTKLKDEFLASMSHEVRTPLTAILG 194

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
             +V++ Q  GPL     +   N I + G  +L ++ND LDI+KIE+G++ L   PVS+ 
Sbjct: 195 LVDVLRAQLVGPLS-EEQMGAINGIKQGGQHLLALINDYLDIAKIEAGRLELDLTPVSVH 253

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725
           +       ++   A    + +       +  +LAD R ++QI +N+LSNAI FTP+GG++
Sbjct: 254 DICQSLRPMIADMAKRAGLQLVYDLDPTVQVMLADARRLRQILINLLSNAIKFTPAGGKV 313

Query: 726 IISTTHT-SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
            +          V   V DTG+G++  +  +  +PF QI + +Q    G+GLGL L   +
Sbjct: 314 GLEVRGDAERGAVRFTVWDTGIGISAEDAARLFEPFQQIESERQKEVTGSGLGLALVAKL 373

Query: 785 VDANMGKFYIFSTPAKGTLIEIIFP 809
              + G   + S    G+   +  P
Sbjct: 374 ARLHGGSVSLESEVGVGSRFHVTLP 398


>gi|209521002|ref|ZP_03269737.1| multi-sensor hybrid histidine kinase [Burkholderia sp. H160]
 gi|209498574|gb|EDZ98694.1| multi-sensor hybrid histidine kinase [Burkholderia sp. H160]
          Length = 1498

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 116/666 (17%), Positives = 214/666 (32%), Gaps = 32/666 (4%)

Query: 159  VPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVE 218
            VP+   A+P+   +           +          A+G           +       + 
Sbjct: 421  VPLAFEAVPV---DHIVVAASLDDALRKVASGEADVAVGNAAAINAQLPQQYAGALRVLG 477

Query: 219  KEK-YDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHT 277
                 D            +   +    +     +      K+    + + ++        
Sbjct: 478  TLGESDSLYFAVREDLSPLVKLIDRALQAMPPAEKQRIRRKWVRPAAPDDAIWSVTAVRL 537

Query: 278  INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV-Y 336
            + +          TL+       E    R             N     +   P P     
Sbjct: 538  LPVLIGIGVVLLVTLRAYVLLQREV---RLRKQTERELALQLNFQETMMKTVPYPLIAKG 594

Query: 337  SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA 396
              G     N ++           +                  + +   +L          
Sbjct: 595  LDGRYIAINEAYEKACGLDREAVLGRTTAEVGTWGEANSRRLDDMTREILR----GGGIG 650

Query: 397  SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
               L       E+   + +          +     G   +  D R  + +      +L  
Sbjct: 651  KVELQFKDGAGESRHGLFWTSVC-KGTDGQPAYVLGTMVDITDIRRAEMRARETERRLFD 709

Query: 457  ILEATSDGIAII--NREGIIL--STNRAVSKLFGY-----PVEDILRKPFTVFLEQNTPS 507
            +  +    +  +  +  G+            L G           L +     + +    
Sbjct: 710  VTRSLPAVVFQLRRSPAGVYSFPYVGGDTRHLLGEGDGVGDASPGLARVDFERVSERDRP 769

Query: 508  VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-YSLTMHDISEWKQ 566
            ++   L    SL     +E        + K +   ++ ++       +S    D S  + 
Sbjct: 770  LVLGELERSASLATPVHMEFRLES-AGQPKWVRAELVPRREADGGVVWSGYWVDASVERA 828

Query: 567  EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
               +L+ A+ +AE  S  K +F A +SHEIRTP+  ++G  EV++             E 
Sbjct: 829  RNEELARARDVAEAASRAKDNFFAMMSHEIRTPMNGVLGLVEVLERTPLST----DQSEM 884

Query: 627  ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
               I  S   +L I++DLLD SKIE+G++ L  EPV L E V  A+ L+   A+EK + +
Sbjct: 885  LGMIHESAGALLQILDDLLDYSKIEAGRLTLEAEPVDLRELVDNAVGLLAGRAHEKGLKV 944

Query: 687  RTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILRVR 742
            R   A  +   +  D   ++QI  N+L NAI FTP G   +  +      +   + L VR
Sbjct: 945  RVEIAARVAATLRGDSVRLRQILFNLLGNAIKFTPKGEVGVSVSVVEDRADSQTLDLTVR 1004

Query: 743  DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
            DTG+G+         +PF Q  +S   R  GTGLGL + + +++   G   + S    GT
Sbjct: 1005 DTGIGIAPDAQAGLFEPFVQAESSTTRRFGGTGLGLTICRKLIELMNGTLTLRSELGHGT 1064

Query: 803  LIEIIF 808
             + +  
Sbjct: 1065 SMIVRL 1070



 Score = 57.7 bits (138), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 42/380 (11%), Positives = 90/380 (23%), Gaps = 17/380 (4%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP---NNHIGDLLKRQNTWYGK 146
              G    I+E   K  G     ++G    +V      +    ++   ++L+       +
Sbjct: 594 GLDGRYIAINEAYEKACGLDREAVLGRTTAEVGTWGEANSRRLDDMTREILRGGGIGKVE 653

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                  G + +     +          +       I  + R +   R   +RL      
Sbjct: 654 LQFKDGAGESRHGLFWTSVCKGTDGQPAYVLGTMVDITDIRRAEMRARETERRLFDVTRS 713

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPH-LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
           L  +           Y          H L   + V   +   A  D    +E+   L   
Sbjct: 714 LPAVVFQLRRSPAGVYSFPYVGGDTRHLLGEGDGVGDASPGLARVDFERVSERDRPLVLG 773

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
           E               +         ++       E                      E 
Sbjct: 774 ELERSASLATPVHMEFRLESAGQPKWVRAELVPRREADGGVVWSGYWVDASVERARNEEL 833

Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
                +            A  +F  +  ++    +    GL  +L+   LS + +    M
Sbjct: 834 ARARDVAEAASR------AKDNFFAMMSHEIRTPMNGVLGLVEVLERTPLSTDQSEMLGM 887

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN-------GIEPEDV 438
           ++ S    +     L          L +   P +        +          G++    
Sbjct: 888 IHESAGALLQILDDLLDYSKIEAGRLTLEAEPVDLRELVDNAVGLLAGRAHEKGLKVRVE 947

Query: 439 DTRINKRKMEIEVMQLCSIL 458
                   +  + ++L  IL
Sbjct: 948 IAARVAATLRGDSVRLRQIL 967


>gi|87118652|ref|ZP_01074551.1| Multi-sensor Hybrid Histidine Kinase [Marinomonas sp. MED121]
 gi|86166286|gb|EAQ67552.1| Multi-sensor Hybrid Histidine Kinase [Marinomonas sp. MED121]
          Length = 916

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 74/265 (27%), Positives = 140/265 (52%), Gaps = 10/265 (3%)

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            ++   +++  +L  A K   + +  K+ FLA +SHE+RTPL AI+G++++++  +    
Sbjct: 263 RNMDSMEEKSAQLHIANKETSESNRLKTQFLANMSHEVRTPLNAILGYTQLLQKDKL--- 319

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL- 677
            + +   Y N I++S N +L I+ D+LD SKIE+GK+NL    V++ E + +   ++   
Sbjct: 320 -DNQQRLYINTIEQSTNNLLAIIGDILDFSKIEAGKLNLEQSEVNIRELIDDVYQILSAN 378

Query: 678 -YANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSG---GQIIISTTHT 732
              ++K + +    AN +P  ++ D   ++QI  N++ NAI FT  G    ++ +     
Sbjct: 379 LLTHKKPVDLIPEVANEVPEWLIGDAIRIRQILTNLIGNAIKFTHDGFVRTKVTLEQQRN 438

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
               ++++V DTG+G+   +L    K F Q+  S   +  GTGLGL + K +V+   G+ 
Sbjct: 439 GQPRLLVQVIDTGIGIPENKLNSLFKAFSQVNTSTTRQFGGTGLGLVITKKLVEQMGGEI 498

Query: 793 YIFSTPAKGTLIEIIFPLYDTSHPH 817
            + S    G+       L+ ++H  
Sbjct: 499 EVNSESGVGSNFRFRINLHSSNHEE 523


>gi|237704694|ref|ZP_04535175.1| sensory histidine kinase AtoS [Escherichia sp. 3_2_53FAA]
 gi|226901060|gb|EEH87319.1| sensory histidine kinase AtoS [Escherichia sp. 3_2_53FAA]
          Length = 612

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 84/371 (22%), Positives = 172/371 (46%), Gaps = 28/371 (7%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            + +         I+E  +DG+  I+R+G + + N A   + GY   +++ +P+++    
Sbjct: 258 AQALRETRTLNDLIIENAADGVIAIDRQGDVTTMNPAAEVITGYQRHELVGQPYSMLF-- 315

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMH 559
              +     + + L                ++ + + L +   ++  +        +   
Sbjct: 316 -DNTQFYSPVLDTLEHGTEHV-ALEISFPGRD-RTIELSVTTSRIHNTHGEMIGALVIFS 372

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           D++  K+ + +++ A+++A        + +A V+HE+R PLTAI G+ ++++ Q   P+ 
Sbjct: 373 DLTARKETQRRMAQAERLAT-----LGELMAGVAHEVRNPLTAIRGYVQILRQQTRDPI- 426

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
              + EY + + +  + +  ++  LL+ S+    +    ++ VSL+  V E + LVQ   
Sbjct: 427 ---HQEYLSVVLKEIDSINKVIQQLLEFSRPRHSQ----WQQVSLNALVEETLVLVQTAG 479

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
            + R+   +   N +  I AD   +KQ+ LNIL NA+    + G+I I T   S+ +  +
Sbjct: 480 VQARVDFISELDNELSPINADRELLKQVLLNILINAVQAISARGKIRIRTWQYSDSQQAI 539

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            + D G G+     +K   PF     S      GTGLGL L++ +++A+ G F + S P 
Sbjct: 540 SIEDNGSGIDLSLQKKIFDPFFTTKAS------GTGLGLALSQRIINAHQGDFRVASLPG 593

Query: 800 KGTLIEIIFPL 810
            G    +I P+
Sbjct: 594 YGATFTLILPI 604



 Score = 40.4 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/117 (10%), Positives = 37/117 (31%), Gaps = 6/117 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G +  ++       G    +++G     +    +    + + D L+          
Sbjct: 282 IDRQGDVTTMNPAAEVITGYQRHELVGQPYSMLF--DNTQFYSPVLDTLEHGTEHVALEI 339

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
            +P     + + +  +   I++ + E  G     I        + +    + ++  +
Sbjct: 340 SFPGRDRTIELSVTTS--RIHNTHGEMIGA--LVIFSDLTARKETQRRMAQAERLAT 392


>gi|119485366|ref|ZP_01619694.1| two-component sensor histidine kinase [Lyngbya sp. PCC 8106]
 gi|119457122|gb|EAW38248.1| two-component sensor histidine kinase [Lyngbya sp. PCC 8106]
          Length = 947

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 110/808 (13%), Positives = 237/808 (29%), Gaps = 110/808 (13%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIG--MRLCDVSDILHIDP--NNHIGDLLKRQ 140
           F W I        +S +L   +G    ++                D   +     L  + 
Sbjct: 166 FDWEISTGELF--MSAQLKADLGYKDHELESNFEAWRSRIHPDDRDRVLDTVQKHLDGKT 223

Query: 141 NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
             +  +  L   +G+  Y  I    L   +   +    R  G                  
Sbjct: 224 KKYTEEYRLRCADGS--YKWILARGLAQRNEQGKP--MRMVGSQQDISDRKRAEDALTES 279

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL---RMKNKVSSLTEYYAHKDDVLKTE 257
           + ++  L E  K   S    +           HL        +      + H  DV   +
Sbjct: 280 EARYRLLAENAKDMISTHTCEGVFLYVSPASRHLLGYEPDQLLGRSLYEFFHPTDVAAWQ 339

Query: 258 KYPLLTSEESS-----------------------------------------------LP 270
           +   +  +                                                    
Sbjct: 340 RTYTVVGQLPDEYTTTYRVRRRDGDYVWFETTSRAISSSSSTAEPIILCISRDITLRKQA 399

Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE-NLTPETVDKC 329
           E+E     +  +   ++    L+  ++   E L         A   + +  +  + V+  
Sbjct: 400 EEEIARFNDELEQRVQERTAQLEVLNELKDELLERERVARTQAEAAQAKIKIYEDIVENI 459

Query: 330 PIPFFVYSHG--------NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
           PI   V+           +L  +NP+   L   +   ++     +         ++ + +
Sbjct: 460 PIGMTVWHLEDLEDLQSFSLVSSNPAASDLLGVQLNSEVGKK--MVECFPKIPETNISLL 517

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
           +        +   A S   +  +   ++  A+   P         N        +    +
Sbjct: 518 QAYAQVIRHQQPCAFSEVRYGDRRVNQSLFAVKAFPLP-------NQRLGVAFEDITTRK 570

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF-TVF 500
             ++ +        S+L +  + I   + EG ++  + A + +  Y V + L  P     
Sbjct: 571 RIEKALSESERLYRSVLNSVQEVIFQTDIEGRLVFLSPAWTFITEYSVSESLDSPLLNYI 630

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSL 556
             +            ++  +    +        K      L I  +    +         
Sbjct: 631 YAEEDQQYCTEQFRRLMETEQDNFI-FEFRSLKKTGDFCWLEIDAQLNRNTDNKVIGVWG 689

Query: 557 TMHDISEWKQEKNKLSHAKKIAEK--------------ESSHKSDFLARVSHEIRTPLTA 602
           T++D+++ KQ +  L        +               +     F    SH+++ PL A
Sbjct: 690 TINDVTKRKQTEAILQARADELFQLNGILLATTGQLEKRNQELDQFAYVASHDLKAPLRA 749

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           I   SE I+      L +       + +    + + +++N LL  S++  G+M +  E V
Sbjct: 750 IANLSEWIEEDLEDKLDDET-RHQMSLLRGRVHRMENLINGLLQYSRV--GRMQVKSESV 806

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP-S 721
            + E + E I  +   +              +P +     S++Q+  N++SNAI      
Sbjct: 807 QVRELLEEIIDSLDPPS-----TFTIEIEGEMPTLKTQRLSLQQVFSNLISNAIKHHDRP 861

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
            G + +S +          V D G G+     +K    F  +    +   E TG+GL + 
Sbjct: 862 DGMVKVS-SRDRGNFYEFSVTDDGPGIAPQYRDKVFTIFQTLKA--RDEAENTGIGLSIV 918

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           K +++A  G   + S   +G      +P
Sbjct: 919 KKIIEALGGTIELESQLDQGATFRFNWP 946



 Score =  106 bits (265), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 48/399 (12%), Positives = 110/399 (27%), Gaps = 34/399 (8%)

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY--SHGNLFYANPSFLLLTKYKSVDDIE 361
                  +     + E      +       F +  S G   + +        YK  + +E
Sbjct: 136 EIEERKQIEIELKKSEERWQLALKGTGDGIFDWEISTGE-LFMSAQLKADLGYKDHE-LE 193

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                      P   D            D      +   + ++    +   +      + 
Sbjct: 194 SNFEAWRSRIHPDDRDRVLDTV--QKHLDGKTKKYT-EEYRLRCADGSYKWILARGLAQR 250

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
           N+  + M   G + +  D +  +  +     +   + E   D I+    EG+ L  + A 
Sbjct: 251 NEQGKPMRMVGSQQDISDRKRAEDALTESEARYRLLAENAKDMISTHTCEGVFLYVSPAS 310

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
             L GY  + +L +    F      +      T +    L            ++   +  
Sbjct: 311 RHLLGYEPDQLLGRSLYEFFHPTDVAAWQRTYTVV--GQLPDEYTTTYRVRRRDGDYVWF 368

Query: 542 RIIIKKL-----PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
               + +                DI+  KQ + +++      E+    ++  L  + +E+
Sbjct: 369 ETTSRAISSSSSTAEPIILCISRDITLRKQAEEEIARFNDELEQRVQERTAQLEVL-NEL 427

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYI---EYANYIDRS------GNLVLDIVNDLLDI 647
           +          E+++ +R             +    I  +         + D+  DL   
Sbjct: 428 K---------DELLERERVARTQAEAAQAKIKIYEDIVENIPIGMTVWHLEDL-EDLQSF 477

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
           S + S         V L+  V + +        E  I +
Sbjct: 478 SLVSSNPAASDLLGVQLNSEVGKKMVECFPKIPETNISL 516


>gi|194337020|ref|YP_002018814.1| PAS/PAC sensor hybrid histidine kinase [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194309497|gb|ACF44197.1| PAS/PAC sensor hybrid histidine kinase [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 650

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 78/522 (14%), Positives = 177/522 (33%), Gaps = 49/522 (9%)

Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
           L A   +  +      +  P    + S        + S+  +  Y   + + I+     L
Sbjct: 24  LEAELRKERSHLGSLFEAMPDMACIASTDGYFKRLSTSWEEVLGYSQSELLSISYM--EL 81

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
           +               L  S          ++  +    +   + +      +       
Sbjct: 82  IHPDDRESTLREVEQQLAGSKTAHF-----VNRYRAKDGSYRWLEWNTSPADDGT----- 131

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYP 488
              +  +    R  +R++ +        +   + G    +     I + N A + L G  
Sbjct: 132 LFAVARDITARRDEERQLLLWADAFRYCVHGLAVG----DPATNTITACNPAFAALHGME 187

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            E++  +    F        +   + ++    +       T    K+     +++ +  +
Sbjct: 188 AEEVANRGILDFYPAEVHPFVLSCIAQLQEAAMVS---FETERCRKDGLCFPVQMDVVCV 244

Query: 549 PFSSCY----SLTMHDISEWKQEKNKLSHAKKIAEKESSHKS--DFLARVSHEIRTPLTA 602
             ++        ++ DI E K+   +    +   ++    +S       V+H++   LT 
Sbjct: 245 KDAAGVPIYTIASVQDIRERKRSLEERCRLETQLQQAQKLESIGRLAGGVAHDLNNLLTP 304

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           I+G++E+++ +  G  G     E    I R+      ++  LL  S+       L    V
Sbjct: 305 ILGYAEMLEMELAGNAG---QQEEVRAIQRASTSARKLIWQLLAFSR----TQTLELGEV 357

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
            L+  + E   +++  +    + +    A ++  + A+   ++Q+ +N+  NA    PSG
Sbjct: 358 ELNAMLKEFGEMLR-QSVGSGVRVEFELAPSLLPLHANAGQLEQVLVNLALNARDAMPSG 416

Query: 723 GQIIISTTHT----------SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           G++   T+                 +L V DTG G+   ++ +  +PF          G+
Sbjct: 417 GRLCFRTSFEKLSEERDGLPPGRYAVLEVADTGCGIRPEDMPRIFEPFFTTKGP----GK 472

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           GTGLGL     +V  + G   +      G    ++ PL D  
Sbjct: 473 GTGLGLSTVYGIVRQHRGNIVVSCPEGDGCSFRVLLPLLDEE 514



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 19/134 (14%), Positives = 45/134 (33%), Gaps = 3/134 (2%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +  + ++  E   L S+ EA  D   I + +G     + +  ++ GY   ++L   +   
Sbjct: 22  KQLEAELRKERSHLGSLFEAMPDMACIASTDGYFKRLSTSWEEVLGYSQSELLSISYMEL 81

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
           +  +        + + L+    +T   +     K+     L                  D
Sbjct: 82  IHPDDRESTLREVEQQLAG--SKTAHFVNRYRAKDGSYRWLEWNTSPA-DDGTLFAVARD 138

Query: 561 ISEWKQEKNKLSHA 574
           I+  + E+ +L   
Sbjct: 139 ITARRDEERQLLLW 152



 Score = 61.2 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 24/277 (8%), Positives = 74/277 (26%), Gaps = 14/277 (5%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGKTTLW 150
            GY K +S    + +G    +++ +   ++      +     +   L    T +      
Sbjct: 52  DGYFKRLSTSWEEVLGYSQSELLSISYMELIHPDDRESTLREVEQQLAGSKTAHFVNRYR 111

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
             +G+  Y  ++    P  + +        F +        D           F +    
Sbjct: 112 AKDGS--YRWLEWNTSP--ADDGTL-----FAVARDITARRDEERQLLLWADAFRYCVHG 162

Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS-L 269
                          +      H     +V++      +  +V       +   +E++ +
Sbjct: 163 LAVGDPATN-TITACNPAFAALHGMEAEEVANRGILDFYPAEVHPFVLSCIAQLQEAAMV 221

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
             + +    +   +  +     +++ +      ++            E        + + 
Sbjct: 222 SFETERCRKDGLCFPVQMDVVCVKDAAGVPIYTIASVQDIRERKRSLEERCRLETQLQQA 281

Query: 330 PIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAG 364
                +     G     N     +  Y  + ++E+AG
Sbjct: 282 QKLESIGRLAGGVAHDLNNLLTPILGYAEMLEMELAG 318


>gi|83942502|ref|ZP_00954963.1| PAS [Sulfitobacter sp. EE-36]
 gi|83846595|gb|EAP84471.1| PAS [Sulfitobacter sp. EE-36]
          Length = 698

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 106/655 (16%), Positives = 216/655 (32%), Gaps = 54/655 (8%)

Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE 245
             R   +     + L  +       +   +  E+    + + +     +        L  
Sbjct: 56  EVREQFEEIIHERSLALRELATFIGENPFAKQEEFTQRVQNIREIDDTVINIAAAPELVV 115

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
              H  +           + E   P  E    +     T             +     + 
Sbjct: 116 TLIHPLEPNMGALGLDYRTNEDQFPGIERMLNLGKELMTGPVDLVQ----GGKGLILRAP 171

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365
              P      +   + +   +         Y    +                      G 
Sbjct: 172 VYWPDPDFATEGDVDGSKRQLWGIVSLVLDYDQFLINSGIREAEERYDILIHAASPQVGV 231

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
              +      S   A        +     +    +   +              ++A    
Sbjct: 232 GPQMFTYGDQSLLEADTV-----TLEFDFSFEEWMLEARTKGGWPKHAPDQWSKRALIAS 286

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
             +   G     +     +++ E+    L S +EA +DG  + + +  +L +N    +++
Sbjct: 287 AGLMLLGTLLYVLQVSERRKRAEV---LLSSGIEALNDGFVMFDAQDRLLLSNSKYKEMY 343

Query: 486 GYPVEDIL-RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
             P E +    PF   L     S             + + L       T E +       
Sbjct: 344 DLPSEVLKPGTPFAELLRIGVKSKQFPMGRYNEEEWIERRLAIHRENRTSETEQHLWGGR 403

Query: 545 IKKLPF----SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
           + K          Y     D++E       LSHAK  AE  S  K+DF+  +SHE+RTPL
Sbjct: 404 VIKASDRPLADGSYVGLRVDVTE-------LSHAKDAAEAASKAKTDFMGVLSHELRTPL 456

Query: 601 TAIIGFSEV-------------IKNQRFGPLGNPRYIEYANYID-----------RSGNL 636
           T I+G +++             +K    G + +       + +            +SG  
Sbjct: 457 TVIMGVAQLSRNARMLSSSKALLKGYEDGEISHAEAKRLLDEMYDQLSGLMNRLVQSGEH 516

Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696
           +L ++N++LD++KIESG + +   P ++ + V   I  ++  +++K +        +   
Sbjct: 517 LLHLINEILDVAKIESGSLVIEPSPCAVQDIVDPVIEQLRTLSSKKGLAFDVVQEAD--M 574

Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI-LRVRDTGVGMTNYELEK 755
           + AD    +QI  N++ NAI FT +G    +        +V+   V D+G G+   EL+ 
Sbjct: 575 VFADKVRARQILFNLIGNAIKFTDTG---FVRLVVKPVGDVVSFEVHDSGAGIPEAELQS 631

Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             + F Q+ ++   R  GTG+GL +++++ +   G   + S   +G+   +  P+
Sbjct: 632 IFEVFYQVDSTATRRAGGTGMGLAISRSLAEMQGGSLSVSSVVGQGSCFILTLPI 686


>gi|294141952|ref|YP_003557930.1| sensor histidine kinase/response regulator [Shewanella violacea
           DSS12]
 gi|293328421|dbj|BAJ03152.1| sensor histidine kinase/response regulator [Shewanella violacea
           DSS12]
          Length = 931

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 89/252 (35%), Positives = 134/252 (53%), Gaps = 10/252 (3%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  AKK A + S  KS+FLA +SHE+RTPL  +IGF++ +         +    +Y N 
Sbjct: 281 ELDLAKKRALEASRIKSEFLANMSHELRTPLNGVIGFAKQLLKTPL----HSSQQDYVNT 336

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I++S   +L I+ND+LD SK+E+GKM L   P +L E + + I+L+   A EK I +   
Sbjct: 337 IEKSATNLLGIINDILDFSKLEAGKMVLENMPFALRETLDDTITLLSNSAREKDIELVVD 396

Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS--NEEVILR--VRDT 744
              +IP  +  D     QI  N++ NAI FT  G  + +    T   N++V LR  V DT
Sbjct: 397 IDQSIPEDLSGDAMRFSQIITNLVGNAIKFTDIGS-VHLRLQLTESTNDKVNLRCEVIDT 455

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G+   + E   + FGQ  +S   R  GTGLGL + K +++   G+    S P  G+  
Sbjct: 456 GIGIDESQQELLFQAFGQADSSISRRFGGTGLGLIITKRLINRMGGQIGCHSKPNTGSSF 515

Query: 805 EIIFPLYDTSHP 816
               PL  + +P
Sbjct: 516 WFTLPLSTSIYP 527


>gi|284035955|ref|YP_003385885.1| GAF sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
 gi|283815248|gb|ADB37086.1| GAF sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
          Length = 1201

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 77/245 (31%), Positives = 131/245 (53%), Gaps = 3/245 (1%)

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
           +++       E  + +KS+FLA +SHE+RTPL +I+  S  +  +       P  +EYA 
Sbjct: 514 DEIQKKADELELTTRYKSEFLANMSHELRTPLNSILLLS-RLLAENNEATLTPDQVEYAR 572

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I  SGN +L +++++LD+SKIE+G+M L ++ +S+ E   E  SL  L A EK +    
Sbjct: 573 VIQSSGNGLLGLIDEILDLSKIEAGQMKLDYQDMSIAEITDELQSLFGLVAKEKGLDFAI 632

Query: 689 SFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVILRVRDTGV 746
           +   ++P ++  D   + QI  N+LSNAI FT SG   + I  + ++   +   V+DTG+
Sbjct: 633 TVKPDVPTVIETDRMRLGQILKNLLSNAIKFTSSGQVSLRIERSTSAASTLCFVVKDTGI 692

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+   +     + F Q   S + +  GTGLGL +++ +     G+  + S    G+   I
Sbjct: 693 GIPPEKQPLVFEAFQQADGSTKRKYGGTGLGLSISRELAKLLGGEITLSSEVNVGSEFTI 752

Query: 807 IFPLY 811
           + PL 
Sbjct: 753 LLPLS 757


>gi|242280736|ref|YP_002992865.1| histidine kinase [Desulfovibrio salexigens DSM 2638]
 gi|242123630|gb|ACS81326.1| histidine kinase [Desulfovibrio salexigens DSM 2638]
          Length = 774

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 68/254 (26%), Positives = 130/254 (51%), Gaps = 12/254 (4%)

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             +   K       A K +  KS FLA +SHEIRTP+ AI+G +E++ +       +   
Sbjct: 246 LVKAIAKSEAMAVEAAKGTRAKSQFLAAMSHEIRTPMNAILGMAEILADSHL----DDEQ 301

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
             +   +  SG  +L ++N++LD+SKIE+G++      ++LD  + +A  +     + K 
Sbjct: 302 RRFVEILQESGESLLHLINEILDLSKIEAGEVAFEKRDLNLDRIIGKAFKVTAHAGHGKG 361

Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII----ISTTHTSNE--- 735
           + +  +   ++P +++ D   ++QI +N++ NAI FT  G  ++    +      N    
Sbjct: 362 LELAYNINRDVPVQLMGDPSRLQQIFVNLIGNAIKFTERGFVVVETSLVQPDMADNGGSL 421

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
           ++   V+D+G+G+ + +L+     F Q  +S   +  GTGLGL + K++ +A  GK ++ 
Sbjct: 422 KIHFAVKDSGIGIEDDKLDSIFDRFTQADSSTTRKYGGTGLGLSICKSLCEAMGGKIWLE 481

Query: 796 STPAKGTLIEIIFP 809
           S    GT + +  P
Sbjct: 482 SRKGFGTTVHMELP 495


>gi|223937764|ref|ZP_03629665.1| GAF sensor hybrid histidine kinase [bacterium Ellin514]
 gi|223893557|gb|EEF60017.1| GAF sensor hybrid histidine kinase [bacterium Ellin514]
          Length = 2077

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 76/274 (27%), Positives = 128/274 (46%), Gaps = 18/274 (6%)

Query: 557  TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
                 +E +Q +  L    K     S +KS+FLA +SHE+RTPL +++  ++ + +   G
Sbjct: 1631 VERKNTEVEQARQALEEKAKQLALTSKYKSEFLANMSHELRTPLNSLLILADQLAHNVEG 1690

Query: 617  PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
             L  P+ IE++  I  SGN +L ++ND+LD+SKIESG + L    +   E          
Sbjct: 1691 NLT-PKQIEFSKTIHASGNDLLSLINDILDLSKIESGTVTLDIIEMRFIELQDYVRRTFN 1749

Query: 677  LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
              A  K +       + +PR +L D + ++Q+  N+LSNA  FT  GG + +S    +  
Sbjct: 1750 HVAESKSLEFDVELDSELPRHMLTDSQRLEQVIRNLLSNAFKFTERGG-VTLSIALVTEG 1808

Query: 736  E-------------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
                          +   V DTG+G+   + +   + F Q   S   +  GTGLGL +++
Sbjct: 1809 WSPDRETLNQARSVIAFSVSDTGIGIPPEKQQIIFEAFQQADGSTSRKYGGTGLGLAISR 1868

Query: 783  AMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
             +     G+  + S   +G+   +  P   T  P
Sbjct: 1869 EIARLLGGEIRLASAIGQGSTFTLYLP--QTHTP 1900


>gi|87307716|ref|ZP_01089859.1| sensory transduction histidine kinase [Blastopirellula marina DSM
           3645]
 gi|87289330|gb|EAQ81221.1| sensory transduction histidine kinase [Blastopirellula marina DSM
           3645]
          Length = 636

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 79/246 (32%), Positives = 124/246 (50%), Gaps = 9/246 (3%)

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
           ++L+       + +  KSDFLA +SHE+RTPL +I+GFS+V+ +       N +   Y  
Sbjct: 340 DELARVNVQLYEMNRVKSDFLANMSHELRTPLNSILGFSDVLSD---IDSLNDKQKRYVQ 396

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I +SG L+LD++ND+LD++KIESG+M +     S+   V     +V+    EK + +  
Sbjct: 397 NIQKSGRLLLDMINDILDLAKIESGRMEVRPSEFSVAAVVRANCDMVRSLIEEKNLDLEC 456

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748
              +    +  D   ++QI  N+LSNAI FTP GG+I    +  ++  + L V DTGVG+
Sbjct: 457 DVHDGGEPMFQDQTKLQQILTNLLSNAIKFTPEGGRITCRVSREAD-MMKLAVEDTGVGI 515

Query: 749 TNYELEKAMKPFGQI-----PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
              + E   + F Q       +S      GTGLGL +   +     G   + S    G+ 
Sbjct: 516 AEEDREIIFEKFRQGAVSPRNDSLTREFSGTGLGLSIVMEICKLLDGSIEMESQLGSGST 575

Query: 804 IEIIFP 809
             I  P
Sbjct: 576 FTIRIP 581


>gi|91781280|ref|YP_556487.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia xenovorans
           LB400]
 gi|91693940|gb|ABE37137.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia xenovorans
           LB400]
          Length = 807

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 91/538 (16%), Positives = 179/538 (33%), Gaps = 43/538 (7%)

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENL-TPETVDKCPIPFFVYSHGNLFYANPSFLLLT 352
           +    +    +     +     D+        TVD     F + + G +   N   + + 
Sbjct: 2   DTQNRNVRMTAQAPDATQWEANDDWARQWVASTVDYS--VFRITTDGRIASWNEGGIRIE 59

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
            Y+  + I      S L       D      +   R      +   R    Q     +  
Sbjct: 60  GYRPAEIIGQ--HFSVLYTDDDRRDGIPEAVMESARRHGRHDSEGWR----QRGDGGTFW 113

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINRE 471
            + +     ++  E      +  +  + R +   +     +   +++  +D  I +++ E
Sbjct: 114 ASVVTTALRDRRGEFSGAVQVVRDVSENRRSHEAVIESERRFRLLVQGVTDYAIFMLSPE 173

Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
           G + + N    ++ GY  E+I+   F+ F      +        + +       E     
Sbjct: 174 GCVTNWNSGARRIKGYTEEEIVGSHFSRFYTPEDAAAGLPQ-RGLQAAARDGRFEAEGWR 232

Query: 532 STKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKES--SHK 585
              +       ++I  +       L       DI+E +Q    L   +    +       
Sbjct: 233 VRSDGTTFWAHVVIDAIYEDDGTLLGFAKITQDITERRQAHELLEKTQAALFQAQKMEAI 292

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
                 V+H+    L  + G  E+++N+    + +    E   +   +      + + LL
Sbjct: 293 GKLTGGVAHDFNNVLQVLRGNLELLENRHSRDVWS---RERLAHAIDAVERGAKLASQLL 349

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
              + ++    L    V+L   V      +   A  + I + T  A  +   L D   ++
Sbjct: 350 AFGRRQA----LRPVVVNLAAMVRGT-DSMLARALGETINVETVVAAGLWNTLVDTHQLE 404

Query: 706 QIALNILSNAIHFTPSGGQIIISTT--------------HTSNEEVILRVRDTGVGMTNY 751
            + LN+  NA    P GG++ I                   + + V+L V DTG+GM   
Sbjct: 405 NVLLNLAINARDAMPGGGRLTIELANAMLDDRYVRPLSDVPAGQYVMLGVTDTGIGMPPE 464

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            +E+A  PF          G+GTGLGL +A   V  + G   I+S    GT + I  P
Sbjct: 465 IVERAFDPFFTTKP----EGQGTGLGLSMAYGFVKQSGGHIRIYSEVGHGTTVRIYLP 518



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 25/248 (10%), Positives = 62/248 (25%), Gaps = 10/248 (4%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK-RQNTWY 144
            + I   G +   +E   +  G    ++IG     V        +     +++  +    
Sbjct: 39  VFRITTDGRIASWNEGGIRIEGYRPAEIIGQHFS-VLYTDDDRRDGIPEAVMESARRHGR 97

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
             +  W   G        +    +  R  EFSG     +V     +          +++F
Sbjct: 98  HDSEGWRQRGDGGTFWASVVTTALRDRRGEFSGA--VQVVRDVSENRRSHEAVIESERRF 155

Query: 205 SHLHEIKKGHSS--VEKEKYDIFSQQSPPPHLRMKNKVSS---LTEYYAHKDDVLKTEKY 259
             L +    ++   +  E                  +       + +Y  +D      + 
Sbjct: 156 RLLVQGVTDYAIFMLSPEGCVTNWNSGARRIKGYTEEEIVGSHFSRFYTPEDAAAGLPQR 215

Query: 260 PLLTSEESSLPEQEDFH-TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
            L  +      E E +    +   +        +  +      +       +      E 
Sbjct: 216 GLQAAARDGRFEAEGWRVRSDGTTFWAHVVIDAIYEDDGTLLGFAKITQDITERRQAHEL 275

Query: 319 ENLTPETV 326
              T   +
Sbjct: 276 LEKTQAAL 283


>gi|83592613|ref|YP_426365.1| Hpt sensor hybrid histidine kinase [Rhodospirillum rubrum ATCC
           11170]
 gi|83575527|gb|ABC22078.1| Hpt sensor hybrid histidine kinase [Rhodospirillum rubrum ATCC
           11170]
          Length = 811

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 97/402 (24%), Positives = 178/402 (44%), Gaps = 24/402 (5%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
                       +   E E    R   R +  E  +  +  E+ +D + +IN  G + + 
Sbjct: 132 DRVELGLCAAWSRFEREQEVGKLRERNRDLVNEKNKYLTAFESLTDPVFLINDAGGLENL 191

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE----ILSLDLRQTLEKITLGST 533
           NR+   L G+         +   +  +   +++  L          +  ++        T
Sbjct: 192 NRSAGILIGFGPSPGAGY-YGSGIPPSAQRLVDDLLARFAQKAAEAEGAESDRIDYRMDT 250

Query: 534 KEE-KLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
            E  +   +R               L   DI+ +K+  +        AE+ +  KS FLA
Sbjct: 251 VEGPRDFEVRRQAMLDVSERYSGQVLIFSDITAYKRASD-------RAEEANQAKSTFLA 303

Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650
            +SHEIRTP+  I+G S +++++    L + R   +A+ I  S  ++L +VND+LD +KI
Sbjct: 304 TMSHEIRTPINGILGLSTLMRDE----LRDERLRHHADAIALSAEMLLSMVNDVLDFTKI 359

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIAL 709
           E+G ++L     S++E ++   +LV   A+ K + +  S +  +P  +  DL  ++Q+ L
Sbjct: 360 EAGILDLDPVDFSVEELLNGVFALVAPSAHRKGLEVYRSVSPAVPERLHGDLAKLRQVLL 419

Query: 710 NILSNAIHFTPSGG-QIII-STTHTSNEEVI--LRVRDTGVGMTNYELEKAMKPFGQIPN 765
           N+ SNA+ FT +G   I I         +VI  + V DTG+G+    L+   +PF Q   
Sbjct: 420 NLFSNAVKFTHAGALSIHIDRLAEAPEGKVILHITVDDTGIGIAPSALKAIFEPFAQADG 479

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           S   R  GTG+GL + + + +   G+ +  S   +G+   + 
Sbjct: 480 SISRRFGGTGMGLAINRRLAEVMGGEVWAESREGEGSRFHVT 521


>gi|315181013|gb|ADT87927.1| phosphate regulon sensor kinase PhoR [Vibrio furnissii NCTC 11218]
          Length = 432

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 82/413 (19%), Positives = 157/413 (38%), Gaps = 36/413 (8%)

Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
             RL    W+ +            +         NGI       R  ++++   + +  +
Sbjct: 50  QMRLSAWLWDEKR-------LTPPSGSGNWEYLFNGIYRLQQRQRKKRKELTNLIRRFRN 102

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
             E+  D + +   EG I+  NR    L G+   D   +P +  +               
Sbjct: 103 GAESLPDAVVVFRGEGNIVWCNRLAQHLLGFRWPDDAGQPISNLIRTPDFIKYLQKDDFT 162

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKK 576
             L++R  L              SL + I        + + + D+++ KQ +        
Sbjct: 163 EPLEMRSPLNVER----------SLELRIVPYTEGE-HLMVVRDVTQLKQLEG------- 204

Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
                   + +F A VSHE+RTP+T + G+ E+   +    L  P + +    +    N 
Sbjct: 205 -------MRRNFFANVSHELRTPMTVLQGYLEM--TEDPDMLVGPMWGKAHGVMTEQLNR 255

Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696
           +  +VN LL +SKIE+  M+   + V +   +          + + +  ++      + R
Sbjct: 256 MNSLVNQLLTLSKIEAAPMHELEDVVDVPAMLEVLEKEAVSLSGDDQHQLKFDIDKQL-R 314

Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKA 756
           +LAD   ++    N++ NA+ +TP G +I +    T      L V D G G+    L + 
Sbjct: 315 VLADEDQLRSAISNLVYNAVKYTPPGAEINVRWFQTPQG-ACLEVEDKGDGIEPQHLHRL 373

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            + F ++  ++     G+GLGL + K  +  +     I ST   G+    + P
Sbjct: 374 TERFYRVDKARSRDTGGSGLGLAIVKHALSHHDSHLEINSTVGVGSRFSFVLP 426


>gi|270296516|ref|ZP_06202716.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270273920|gb|EFA19782.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 867

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 94/534 (17%), Positives = 181/534 (33%), Gaps = 29/534 (5%)

Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANP 346
                + N +ES + +  +    +     E  +               Y     + + N 
Sbjct: 347 VAWLFRANRRESRKRIHAQTRLLIQHRLVEQRDEFDNIFCSIRDGLITYDTDLRIHFVNR 406

Query: 347 SFLLLTKYKSV---DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403
             L +    S              ++       +N     +   R+ +  I+   +    
Sbjct: 407 PLLQMLGLSSETYTSRFYEGQMAGSIFRIYMNGENILQDLLKKVRTGKRPISIPEKAFMQ 466

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
           + ++     ++                        +        E++       +E +S 
Sbjct: 467 ENHQGTYFPVSGEVVPIFANEKMTGMAIVCRNISEE--------EMQRRFFNMAVEESSI 518

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVE-DILRKP-FTVFLEQNTPSVMNHYLTEILSLDL 521
                N           + + FGY  + D+L +      +              IL  + 
Sbjct: 519 YPWQYNMHMNRFHFPGGLLRRFGYTDDTDLLARDEMDTLIHPEDLLHTRRNFDAILLDNE 578

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPF-----SSCYSLTMHDISEWKQEKNKLSHAKK 576
             +        + +                              I  +K  +  L  A+ 
Sbjct: 579 INS-RMSFRLKSADGSYEWWEFRSTAYDGLTVDTPYMVLGVCQSIQRYKDTEEALIAARD 637

Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
            A +    KS FLA +SHEIRTPL AI+GFS+++K+            ++   I+ +  L
Sbjct: 638 RALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLKD--LDAFSPEEVKQFVETININCTL 695

Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696
           +L ++ND+LD+S+IESG M+  F   +L   + E     +L      + +R        +
Sbjct: 696 LLALINDILDLSRIESGTMDFKFGAFNLAFIMQEVHESQRLSMPR-DVELRIEIPEGEDK 754

Query: 697 -ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755
            ++ D   +KQ+  N+++NA  FT +G  I             + V DTG G++    + 
Sbjct: 755 LVITDSVRLKQVVNNLINNAKKFTVTGS-ITFGYVTNREGYTTIFVEDTGSGISEDAQKH 813

Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             + F +  +      +G GLGL + + +VD   G   + S   KGT  E++ P
Sbjct: 814 IFERFYKEDSFT----QGAGLGLSICQTIVDRLHGSISVSSELGKGTRFEVVIP 863


>gi|228962764|ref|ZP_04124030.1| hypothetical protein bthur0005_60190 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228796917|gb|EEM44261.1| hypothetical protein bthur0005_60190 [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 800

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 73/264 (27%), Positives = 131/264 (49%), Gaps = 16/264 (6%)

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
             D+ + K+   +L    K  +  S +KS+FLA +SHE+RTPL +I+  SE++   +   
Sbjct: 372 ARDLQQTKK---ELELQTKQLQASSQYKSEFLANMSHELRTPLNSILILSEMLLENKNET 428

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
           L      E+A+ I  +G  +L ++ND+LD+SKIE+ K+ +    +S+ E  ++       
Sbjct: 429 LSEEEQ-EFAHIIYSAGTDLLGLINDVLDLSKIEAKKLEMICGEMSIQELCTQLERHFTP 487

Query: 678 YANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQI----------- 725
            A +K+I  +      +P +   D + ++QI  N+LSNA  FT  G  I           
Sbjct: 488 IAQQKQIDFQILLQKPVPDLFYTDEKRLQQIIKNMLSNAFKFTEQGSVIMQVEQMQKEQM 547

Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
            +     S+  +++  +DTG+G++  + +     F Q   +   +  GTGLGL ++K +V
Sbjct: 548 TVEMEKKSDTWLVITCQDTGIGISEEQQQLIFDAFHQADGAIARKYGGTGLGLSISKELV 607

Query: 786 DANMGKFYIFSTPAKGTLIEIIFP 809
               G   + S   KG++  +  P
Sbjct: 608 TLLGGSITVHSIQGKGSIFTVYIP 631


>gi|118588695|ref|ZP_01546103.1| sensor kinase [Stappia aggregata IAM 12614]
 gi|118438681|gb|EAV45314.1| sensor kinase [Stappia aggregata IAM 12614]
          Length = 839

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 98/664 (14%), Positives = 215/664 (32%), Gaps = 53/664 (7%)

Query: 175 FSGFRGFG--IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP 232
           F+G  GF          +    A    L+     + ++        K   D+   ++   
Sbjct: 56  FAGAIGFLRLSARPGEANPLASAFVDTLEDGAL-ITDLDGRLVYANKAYADLTGAETAAD 114

Query: 233 HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL 292
              ++   SS  +  A       ++        +  +         +      +     L
Sbjct: 115 IRVVERVFSS--DPDAADAIFRLSQAMRDSRRAQEEIRMPFPLGRADGAARWYRVSVRPL 172

Query: 293 QNNSKE-------SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYA 344
           Q   +         ++        +      +        +D  P  FF     G + Y 
Sbjct: 173 QVPKERGGGKPMAVWQLADITRDRAEQENSFQELQRVINFLDHAPAGFFSCDAEGRIVYL 232

Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
           N +      Y              L  +  +  +       +        + +  L  + 
Sbjct: 233 NATLADWLGYDLAQ-----FDAGDLDLSSIVRGDGTELIRSIKGQAGEVKSETFDLDFVT 287

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
            N    L +  +      +  +      +             +    ++       T   
Sbjct: 288 RNG-RGLPVRLLHRVPFGENGQPGDSRTLVLNRSRGEEASEALRAAEVRFARFFNNTPIA 346

Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
           IA +++EG +L TN    KLFG    D        ++ ++    +   L    +      
Sbjct: 347 IASLDKEGRVLRTNAPFLKLFGAVDTDDESPKLEAYVAESGRQELAKSLQAAANGIGEIA 406

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM--HDISEWKQEKNKLSHAKKIAEKES 582
              I L    + +  +  +   +       +  +   + ++ +  + + + ++K+     
Sbjct: 407 PIDIPLVEGNDPRSATFYVSAVQEGEGDGEAAIVYALETTQQRALEAQFAQSQKM----- 461

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
                    V+H+    LTAIIGFS+++         +P + +  N I ++ N    +V 
Sbjct: 462 QAIGQLAGGVAHDFNNVLTAIIGFSDLLLASHRPT--DPSFQDIMN-IKQNANRAAGLVR 518

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702
            LL  S+    +  L  + + L++ +++ +S++      +++ ++     ++  ++ADL 
Sbjct: 519 QLLAFSR----RQTLRPQQLELNDVLAD-LSILLDRLLGEKVELKVIHGRDLWPVMADLN 573

Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTT---------------HTSNEEVILRVRDTGVG 747
            ++Q+ +N+  NA      GG++ I T                    E  ++ V DTG G
Sbjct: 574 QLEQVIVNLAVNAGDAMSDGGRLTIRTRNVSEAESTQFENIRGMPPGEYTLVEVDDTGHG 633

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           +    +EK   PF     S +  G+GTGLGL     +V    G  +  S    GT   + 
Sbjct: 634 IPPDVMEKIFDPFF----STKEVGKGTGLGLSTVYGIVKQTGGFIFCTSEVDVGTTFRLF 689

Query: 808 FPLY 811
            P +
Sbjct: 690 LPRH 693



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 47/385 (12%), Positives = 90/385 (23%), Gaps = 26/385 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR-QNTWY-GK 146
            D  G L   ++      G      I  R+ +       D  + I  L +  +++    +
Sbjct: 90  TDLDGRLVYANKAYADLTGAETAADI--RVVERVFSSDPDAADAIFRLSQAMRDSRRAQE 147

Query: 147 TTLWPI---EGTNLYVPIDLAALPIYSRNREFSG--FRGFGIVHVNRVDNDPRALGKRLD 201
               P              ++  P+        G     + +  + R   +     + L 
Sbjct: 148 EIRMPFPLGRADGAARWYRVSVRPLQVPKERGGGKPMAVWQLADITRDRAEQENSFQELQ 207

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK----NKVSSLTEYYAHKDDVLKTE 257
           +  + L     G  S + E   ++   +    L       +            D      
Sbjct: 208 RVINFLDHAPAGFFSCDAEGRIVYLNATLADWLGYDLAQFDAGDLDLSSIVRGDGTELIR 267

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE----YLSHRNHPSLSA 313
                  E  S     DF T N      +         + +  +     L+       S 
Sbjct: 268 SIKGQAGEVKSETFDLDFVTRNGRGLPVRLLHRVPFGENGQPGDSRTLVLNRSRGEEASE 327

Query: 314 YFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                E       +  PI    +   G +   N  FL L      DD   +  L     A
Sbjct: 328 ALRAAEVRFARFFNNTPIAIASLDKEGRVLRTNAPFLKLFGAVDTDD--ESPKLEA-YVA 384

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
                  A                   L        +  + TF          +      
Sbjct: 385 ESGRQELAKSLQAAANGIGEIAPIDIPL----VEGNDPRSATFYVSAVQEGEGDGEAAIV 440

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSI 457
              E    R  + +   +  ++ +I
Sbjct: 441 YALETTQQRALEAQF-AQSQKMQAI 464



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/316 (10%), Positives = 86/316 (27%), Gaps = 15/316 (4%)

Query: 79  IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK 138
                 F ++ DA G +  ++  L   +G    +       D+S I+  D    I  +  
Sbjct: 214 DHAPAGF-FSCDAEGRIVYLNATLADWLGYDLAQ-FDAGDLDLSSIVRGDGTELIRSIKG 271

Query: 139 RQNTWYGKTTLWPIEGTNLY-VPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG 197
           +      +T        N   +P+ L     +  N +  G     +++ +R +    AL 
Sbjct: 272 QAGEVKSETFDLDFVTRNGRGLPVRLLHRVPFGENGQ-PGDSRTLVLNRSRGEEASEAL- 329

Query: 198 KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP----PPHLRMKNKVSSLTEYYAHKDDV 253
           +  + +F+          +   ++  +    +P       +   ++   L  Y A     
Sbjct: 330 RAAEVRFARFFNNTPIAIASLDKEGRVLRTNAPFLKLFGAVDTDDESPKLEAYVAESGRQ 389

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
              +      +    +   +       +  +   Y   +Q    +    + +    +   
Sbjct: 390 ELAKSLQAAANGIGEIAPIDIPLVEGNDPRSATFYVSAVQEGEGDGEAAIVYALETTQQR 449

Query: 314 YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
             +     + +            + G     N     +  +  +  +             
Sbjct: 450 ALEAQFAQSQKM-----QAIGQLAGGVAHDFNNVLTAIIGFSDL-LLASHRPTDPSFQDI 503

Query: 374 KLSDNNAIKPVMLYRS 389
                NA +   L R 
Sbjct: 504 MNIKQNANRAAGLVRQ 519


>gi|73537501|ref|YP_297868.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase A, N-terminal [Ralstonia
           eutropha JMP134]
 gi|72120838|gb|AAZ63024.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal [Ralstonia
           eutropha JMP134]
          Length = 1129

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 124/730 (16%), Positives = 236/730 (32%), Gaps = 45/730 (6%)

Query: 105 TIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLA 164
            +   A K +  +   V+  +       I   L+ +  +  ++ L      ++    + +
Sbjct: 48  LVALEADKHLSRQHNQVAGYV-----GSISQRLESEAAFLRRSVL------SVRRYHE-S 95

Query: 165 ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDI 224
                         R  G+  ++                            +  ++    
Sbjct: 96  GSAQSPDAATVQSVRATGVARISDKIAGHDYYLLATAATRHAWGPAMPTQLARLQQIALG 155

Query: 225 FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYT 284
                    L     V SL    A       +     +  + + +       T  L   T
Sbjct: 156 TLATQQAFGLDHWVYVLSLENDSAAILARQPSAAQVTVPIQPALIDTLRGIITQALLDRT 215

Query: 285 KKQYFGTLQNN-SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN--- 340
                   +   +    + L+             G+  T       P+  F+        
Sbjct: 216 GHAVPPGGEQLWAGPVRDPLTGAMVMLSLGAAYTGDTPTVLLAACVPVVDFLAQLDRPGD 275

Query: 341 ---LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS-------DNNAIKPVMLYRSD 390
              L   NP+   +        +E     + +  A +             +    L    
Sbjct: 276 TALLALLNPADAAIDVAAPALPVEGPVVSAVMAQARRQPHNVSHYTRRGVLMVQPLQPGF 335

Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450
              +        +         +  +          +      +          R +E E
Sbjct: 336 GVLVCFLPYGLLVPALAPELAVILSVALLLIGAIVLSARYWDRQMLRRTHSEAARALENE 395

Query: 451 VMQLCSIL-EATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
           +  L  IL  AT  G+ I+  R+  +L++N+    L      + L    T   E+  P  
Sbjct: 396 I--LNQILVSATPVGLCIVRQRDYSVLTSNQLAQALLRLDKANALPAQVTEAFERQPPGA 453

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568
                  I +  +    +         ++ L +     +          + DI+  +  +
Sbjct: 454 EASQPAPINNFTVPAPGDD-----AAAQRYLQVTYAPARYHDDKVLFCAVQDITTQQALE 508

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
            +L  A++  E     +S F A +SHEIRTPL A+IG  E++        G   + +  +
Sbjct: 509 QQLRTAQQATEAMMRARSSFFASMSHEIRTPLNALIGNLELLARSP----GLEGHAQRLH 564

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            +  +   +  IVND+LD SKI++GK+ L  +P  L EA+          A  + I ++ 
Sbjct: 565 VLGTAAEGLRRIVNDILDFSKIDAGKLELVDKPFRLAEALEGLALTYAPMATVRGIRLQL 624

Query: 689 SFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH----TSNEEVILRVRD 743
             A  +   +  D   + Q+  N+L+NA  FT SG +I +S ++         +  RV D
Sbjct: 625 QLAPELDREVCGDGMRLTQVVNNLLNNAFKFTTSG-RITLSGSYGAGADGRHMLTCRVGD 683

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TG+GM    +E+  +PF Q  +    R  GTGLGL +   + +   G   + S    G+ 
Sbjct: 684 TGIGMPAALVERIFQPFVQGDDVATGRYGGTGLGLSICARLCELMGGSIGVQSVQDVGSA 743

Query: 804 IEIIFPLYDT 813
             I+ PL  T
Sbjct: 744 FTILVPLAPT 753


>gi|113969453|ref|YP_733246.1| hybrid sensory histidine kinase BarA [Shewanella sp. MR-4]
 gi|113884137|gb|ABI38189.1| Hpt sensor hybrid histidine kinase [Shewanella sp. MR-4]
          Length = 935

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 90/245 (36%), Positives = 135/245 (55%), Gaps = 8/245 (3%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  AKK A + S  KS+FLA +SHE+RTPL  +IGF+  +         +   ++Y N 
Sbjct: 286 ELDLAKKRALEASRIKSEFLANMSHELRTPLNGVIGFARQLVKTPL----HSSQVDYINT 341

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I+RS   +L I+ND+LD SK+E+GKM L   P  L E + E I+L+   A  K + +   
Sbjct: 342 IERSATNLLAIINDILDFSKLEAGKMVLEKMPFGLRETLGETITLISGSAQAKGLELVVD 401

Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVILR--VRDTG 745
            A N+P  +  D   V QI  N++ NAI FT SG   + +   + ++E+V+LR  V DTG
Sbjct: 402 IAPNVPDNVNGDAMRVCQIINNLVGNAIKFTDSGSVLVKLELQNQTDEQVVLRCDVIDTG 461

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+ + + +   + FGQ  +S   R  GTGLGL + K +V+   G+    S   KG+   
Sbjct: 462 IGIDDSQQDFLFQAFGQADSSISRRFGGTGLGLVITKRLVNQMGGQIGFTSAVDKGSNFW 521

Query: 806 IIFPL 810
              PL
Sbjct: 522 FTLPL 526


>gi|327189383|gb|EGE56551.1| putative two-component sensor histidine kinase protein [Rhizobium
           etli CNPAF512]
          Length = 511

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 102/249 (40%), Positives = 154/249 (61%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I+E +  K+    A++ AE+ +  KS FLA +SHE+RTPL AI+GFSEV+  +  GPL N
Sbjct: 238 IAELEVAKSMSDEARRRAEEANLAKSRFLASMSHELRTPLNAILGFSEVMSAEVMGPLAN 297

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
           P Y EYA  I RSG  +LD++N++LD+S+IE+GK  L  E +SL +   + I +VQL A 
Sbjct: 298 PTYKEYAGDIHRSGQHLLDLINEILDLSRIEAGKYELSEEAISLLDITEDCIGMVQLRAR 357

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
            K I I   F   +P I AD +S++Q+ LN+LSNA+ FTP GG+I +    T+     + 
Sbjct: 358 AKNIAISDQFERQLPAIWADEKSMRQVVLNLLSNAVKFTPQGGEIHVKVGWTAGGGQYIS 417

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           ++D G G+   E+   +  FGQ   + +   +GTGLGLP+ +A++  + G+F + S   +
Sbjct: 418 IKDNGPGIPEEEIPVVLSAFGQGSIAIKSAEQGTGLGLPIVQAILAKHDGQFLLKSKLRE 477

Query: 801 GTLIEIIFP 809
           GT +  I P
Sbjct: 478 GTEVIAILP 486


>gi|222110930|ref|YP_002553194.1| signal transduction histidine kinase, nitrogen specific, ntrb
           [Acidovorax ebreus TPSY]
 gi|221730374|gb|ACM33194.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Acidovorax ebreus TPSY]
          Length = 720

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 101/566 (17%), Positives = 195/566 (34%), Gaps = 49/566 (8%)

Query: 276 HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS-AYFDEGENLTPETVDKCPIPFF 334
                 Q         +        E  +       S A  +             P+   
Sbjct: 23  PERRGPQRASGDVAELIAQLRASQAELEAQNQVLRYSQAAAESASERFEALFSSVPLSLM 82

Query: 335 VYSH-GNLFYAN----PSFLLLTKYKSVDDI------EIAGGLSTLLDAPKLSDNNAIKP 383
           V      +  AN     SF      + +  +        A  +    D  +         
Sbjct: 83  VVDEHDMVVQANSMAQRSFQPRETDRPLTALMPFVSDSHAPRVREAFDQARAMGTAEATE 142

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
           V+ + S+   I     +  I+   E    +T       +Q P    +  ++    + +  
Sbjct: 143 VVFHISEGRHITGDLHIARIESRSEQDAPLTQFLCAVIDQGPLLAERQALQRSAQELQER 202

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
             ++     +L +++ +  D I  +++   I   N   + LF     D L  P + FL +
Sbjct: 203 NVQLHTSERRLEAVINSALDAIICVDQHERITVFNPTAAMLFQCATSDALGSPLSRFLPE 262

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDI 561
               +    LT   +L             T   + L++ I +     +     ++   D+
Sbjct: 263 AQQVLAFAQLTTQAALG-------EMTALTASGRELAVEISVSFERHAEGETTTVFARDL 315

Query: 562 SEWKQEKNKLSHAKKIAEKE--SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           +  K+E+ + +  +    +             ++H+    L AI+G  E    +   P G
Sbjct: 316 TARKREEARRNALEGQLRESHKMQAVGTMAGGIAHDFNNILHAILGNVE--LAKADCPPG 373

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
            P Y      ID++G    D+V  +L  S+ E          V+L E V +   L+++  
Sbjct: 374 TPMYESLLE-IDKAGRRARDLVRQILTFSRNE----PPKRAAVTLAEVVHDTERLLRVTL 428

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF-TPSGGQIII----------- 727
             + I +      ++P +LAD   V+Q  LN+ +NA+H      G+I +           
Sbjct: 429 PPE-IELTVHVPPDLPPVLADATQVEQAVLNLCTNAVHAIGSRRGRIRVDAALIQPDQRM 487

Query: 728 --STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
             S   ++ + V +RV D G GM      +  +PF          G+GTGLGL +   ++
Sbjct: 488 RESLGLSAGDYVAVRVHDNGPGMDAATQSRIFEPFFTTKP----VGQGTGLGLAVVHGVM 543

Query: 786 DANMGKFYIFSTPAKGTLIEIIFPLY 811
             + G   + S P +G+   + FP+ 
Sbjct: 544 RTHGGGVDVHSAPGEGSRFTLYFPVA 569



 Score = 41.6 bits (96), Expect = 0.58,   Method: Composition-based stats.
 Identities = 29/302 (9%), Positives = 67/302 (22%), Gaps = 14/302 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D H  +   +              +G  L         +    +           G+ T
Sbjct: 227 VDQHERITVFNPTAAMLFQCATSDALGSPLS----RFLPEAQQVLAFAQLTTQAALGEMT 282

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                G  L V I ++        R   G                 A    L+ +    H
Sbjct: 283 ALTASGRELAVEISVSF------ERHAEGETTTVFARDLTARKREEARRNALEGQLRESH 336

Query: 209 EIKKGHSSVEKEKYDIFSQQSP---PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
           +++   +      +D  +          L   +       Y +  +      +   L  +
Sbjct: 337 KMQAVGTMAGGIAHDFNNILHAILGNVELAKADCPPGTPMYESLLEIDKAGRRARDLVRQ 396

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
             +    E      +           L   +      L+    P L     +   +    
Sbjct: 397 ILTFSRNEPPKRAAVTLAEVVHDTERLLRVTLPPEIELTVHVPPDLPPVLADATQVEQAV 456

Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIE-IAGGLSTLLDAPKLSDNNAIKPV 384
           ++ C                 + L+    +  + +   AG    +         +A    
Sbjct: 457 LNLCTNAVHAIGSRRGRIRVDAALIQPDQRMRESLGLSAGDYVAVRVHDNGPGMDAATQS 516

Query: 385 ML 386
            +
Sbjct: 517 RI 518


>gi|190892130|ref|YP_001978672.1| two-component sensor histidine kinase [Rhizobium etli CIAT 652]
 gi|190697409|gb|ACE91494.1| probable two-component sensor histidine kinase protein [Rhizobium
           etli CIAT 652]
          Length = 511

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 102/249 (40%), Positives = 154/249 (61%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I+E +  K+    A++ AE+ +  KS FLA +SHE+RTPL AI+GFSEV+  +  GPL N
Sbjct: 238 IAELEVAKSMSDEARRRAEEANLAKSRFLASMSHELRTPLNAILGFSEVMSAEVMGPLAN 297

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
           P Y EYA  I RSG  +LD++N++LD+S+IE+GK  L  E +SL +   + I +VQL A 
Sbjct: 298 PTYKEYAGDIHRSGQHLLDLINEILDLSRIEAGKYELSEEAISLLDITEDCIGMVQLRAR 357

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
            K I I   F   +P I AD +S++Q+ LN+LSNA+ FTP GG+I +    T+     + 
Sbjct: 358 AKNIAISDQFERQLPAIWADEKSMRQVVLNLLSNAVKFTPQGGEIHVKVGWTAGGGQYIS 417

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           ++D G G+   E+   +  FGQ   + +   +GTGLGLP+ +A++  + G+F + S   +
Sbjct: 418 IKDNGPGIPEEEIPVVLSAFGQGSIAIKSAEQGTGLGLPIVQAILAKHDGQFLLKSKLRE 477

Query: 801 GTLIEIIFP 809
           GT +  I P
Sbjct: 478 GTEVIAILP 486


>gi|167762177|ref|ZP_02434304.1| hypothetical protein BACSTE_00529 [Bacteroides stercoris ATCC
           43183]
 gi|167699820|gb|EDS16399.1| hypothetical protein BACSTE_00529 [Bacteroides stercoris ATCC
           43183]
          Length = 852

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 91/527 (17%), Positives = 185/527 (35%), Gaps = 29/527 (5%)

Query: 293 QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLL 351
           ++N +ES + +  +    +     E  +   +           Y     + + N + + +
Sbjct: 337 RSNRRESRKRIHAQTRLLIQHRLVEQRDEFDKIFCSIRDGLVTYDMDLRIHFVNRALVEM 396

Query: 352 TKYKSV---DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
               +              ++L      +N     +     DR  +    +    +  + 
Sbjct: 397 LGLPAEMYTTRPYEGQVAGSILHIYMNGENILQALLKQVIQDRKPVIIPEKAFMQENTKG 456

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468
               ++        +               +        E++       +E +S      
Sbjct: 457 IYFPVSGEVVPIFAKDKLTGMAIVCRNISEE--------EMQKRFFNMAIEESSIYPWQY 508

Query: 469 NREGIILSTNRAVSKLFGY--PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
           N           + + F      + I R+     +     S    +   I+      +  
Sbjct: 509 NTRLKCFHFPDGLLQRFNCYDNTDYISREELDRIVHPEDLSRTCRHFDNIMLGHEPNS-R 567

Query: 527 KITLGSTKEEKLLSLRIIIKKLPF-----SSCYSLTMHDISEWKQEKNKLSHAKKIAEKE 581
                   +                              I  +K  + +L  A+  A + 
Sbjct: 568 MSFRLQNADGGYEWWEFRSTAYEGLTVDIPYRVLGVCQSIQRYKDTEEELIAARDRALQA 627

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
              KS FLA +SHEIRTPL AI+GFS+++K+       +    ++   I+ +  L+L ++
Sbjct: 628 DRLKSAFLANMSHEIRTPLNAIVGFSDLLKD--LQAFSSEEVQQFVETININCTLLLALI 685

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILAD 700
           ND+LD+S+IESG M+  F   +L   + E     +L   +  + + T F     + I  D
Sbjct: 686 NDILDLSRIESGTMDFQFSSYNLTFIMQEVYDSQRLSMPQ-GVELCTDFPEGADKYITTD 744

Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760
              +KQ+  N+++NA  FT  G  I +      +    + V DTG G+++ + +   + F
Sbjct: 745 AVRLKQVLNNLINNAKKFTVQGS-ITLGYRVDESGYTTVFVEDTGAGISDEDQKHIFERF 803

Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
            +  +      +G GLGL + + +V+   G   + S P +GT  E+ 
Sbjct: 804 YKADSFT----QGAGLGLSICQTIVERIHGTITVTSKPGRGTRFEVR 846



 Score = 65.8 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 22/214 (10%), Positives = 61/214 (28%), Gaps = 19/214 (8%)

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
            +  +  D   +     +  I                        +            + 
Sbjct: 287 QLDFFHVDVDSVEKRGIVLNIPLMDRYQAWFILFYSVIVGALAFLVVWLYRSNRRESRKR 346

Query: 443 NKR--------KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
                      ++  +  +   I  +  DG+   + +  I   NRA+ ++ G P E    
Sbjct: 347 IHAQTRLLIQHRLVEQRDEFDKIFCSIRDGLVTYDMDLRIHFVNRALVEMLGLPAEMYTT 406

Query: 495 KPFTV-------FLEQNTPSVMNHYLTEILSLDLRQTL-EKITLGSTKEEKLLSLRIIIK 546
           +P+          +  N  +++   L +++       + EK  +    +     +   + 
Sbjct: 407 RPYEGQVAGSILHIYMNGENILQALLKQVIQDRKPVIIPEKAFMQENTKGIYFPVSGEVV 466

Query: 547 KLPFSS---CYSLTMHDISEWKQEKNKLSHAKKI 577
            +         ++   +ISE + +K   + A + 
Sbjct: 467 PIFAKDKLTGMAIVCRNISEEEMQKRFFNMAIEE 500


>gi|149908193|ref|ZP_01896857.1| hypothetical protein PE36_01767 [Moritella sp. PE36]
 gi|149808735|gb|EDM68668.1| hypothetical protein PE36_01767 [Moritella sp. PE36]
          Length = 742

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 81/278 (29%), Positives = 133/278 (47%), Gaps = 19/278 (6%)

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
              +   ++ KQ    ++  K  A K +  KS FLA +SHEIRTPL  IIG +E++K+  
Sbjct: 230 LAVLQ--TQLKQNIATITQEKDNANKANRAKSTFLANMSHEIRTPLNGIIGMAEILKDSP 287

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
             P+      +Y   ID S   +L ++ND+LD+SKIESG + +     ++ E + +  SL
Sbjct: 288 LSPI----QKDYLMTIDSSSQTLLMLINDVLDLSKIESGNLVISPHTSNVKEVMFDTASL 343

Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHT 732
           + + A EK I +       +P  +  D   ++Q+ +N+ SNA+ FT  G   + + +   
Sbjct: 344 IAVKAQEKNIELDIQIDPELPELVKLDEHKLRQVLMNLASNAVKFTAKGKITLTLQSKVV 403

Query: 733 SNEEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
             + +     V+DTG+G+ + +  K  + F Q  N+      GTGLGL ++  +V    G
Sbjct: 404 DADHIALSFSVKDTGIGIESGKHSKIFEAFQQEDNNTTRHFGGTGLGLSISAKIVSLMGG 463

Query: 791 KFYIFSTPAKGTLIEIIF--------PLYDTSHPHDCI 820
              I S   +G+              P    S PH  I
Sbjct: 464 YIAITSIKGQGSDFHFTITVGVEKIQPKQPVS-PHQAI 500


>gi|114046681|ref|YP_737231.1| hybrid sensory histidine kinase BarA [Shewanella sp. MR-7]
 gi|113888123|gb|ABI42174.1| Hpt sensor hybrid histidine kinase [Shewanella sp. MR-7]
          Length = 935

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 90/245 (36%), Positives = 135/245 (55%), Gaps = 8/245 (3%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  AKK A + S  KS+FLA +SHE+RTPL  +IGF+  +         +   ++Y N 
Sbjct: 286 ELDLAKKRALEASRIKSEFLANMSHELRTPLNGVIGFARQLVKTPL----HSSQVDYINT 341

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I+RS   +L I+ND+LD SK+E+GKM L   P  L E + E I+L+   A  K + +   
Sbjct: 342 IERSATNLLAIINDILDFSKLEAGKMVLEKMPFGLRETLGETITLISGSAQAKGLELVVD 401

Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVILR--VRDTG 745
            A N+P  +  D   V QI  N++ NAI FT SG   + +   + ++E+V+LR  V DTG
Sbjct: 402 IAPNVPDNVNGDAMRVCQIINNLVGNAIKFTDSGSVLVKLELQNQTDEQVVLRCDVIDTG 461

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+ + + +   + FGQ  +S   R  GTGLGL + K +V+   G+    S   KG+   
Sbjct: 462 IGIDDSQQDFLFQAFGQADSSISRRFGGTGLGLVITKRLVNQMGGQIGFTSAVDKGSNFW 521

Query: 806 IIFPL 810
              PL
Sbjct: 522 FTLPL 526


>gi|78484412|ref|YP_390337.1| periplasmic sensor hybrid histidine kinase [Thiomicrospira
           crunogena XCL-2]
 gi|78362698|gb|ABB40663.1| periplasmic sensor hybrid histidine kinase [Thiomicrospira
           crunogena XCL-2]
          Length = 721

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 76/254 (29%), Positives = 125/254 (49%), Gaps = 7/254 (2%)

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
            +L+ AK+ A+  +  KS+FLA +SHEIRTP+  IIG + ++ +            +   
Sbjct: 201 KELNQAKQEADASNQLKSEFLANMSHEIRTPMNGIIGMTGLLLDTSL----KKEQRDLTL 256

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            +  S   +L I+ND+LD SKIE+GKM L++E V L   +   + +V   A  K + +  
Sbjct: 257 TVKESAESLLAIINDILDFSKIEAGKMELNYESVKLVPFLDGVMEMVASSAQSKGLNLAY 316

Query: 689 SFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVILRVRDTGV 746
                +P  I  D   ++Q+ +N+LSN I FT  G   + +S   + +  +  +V DTG+
Sbjct: 317 FIDPILPAEIETDGVRLRQVLINLLSNGIKFTDHGYVYLTVSALDSDSNRLQFKVTDTGI 376

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G++     K    F Q+  S      GTGLGL ++K ++    G   + S   KG     
Sbjct: 377 GISEEGQAKLFNAFSQVDGSSMRVFGGTGLGLTISKQILSLLGGHISVKSALGKGACFCF 436

Query: 807 IFPLYDTSHPHDCI 820
             P Y     ++C+
Sbjct: 437 DIP-YRVMDSNNCL 449


>gi|304440637|ref|ZP_07400521.1| phosphate regulon sensor histidine kinase protein PhoR
           [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304370824|gb|EFM24446.1| phosphate regulon sensor histidine kinase protein PhoR
           [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 545

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 81/356 (22%), Positives = 155/356 (43%), Gaps = 32/356 (8%)

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
            +IL    +G+ I +R   ++  N +   +     + I  K  +  LE    S +   + 
Sbjct: 220 EAILTKMKEGLVIFDRSLRLVLINDSAINIL----KPINSKKGSHILELTNESKILDAVN 275

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA 574
           E       +  E        + K+    I   +       +L + D    K  +  L   
Sbjct: 276 EGFKGKYIKG-EIEI-----DNKIYEYFISP-ESESLGGVALLLTD----KTYEAGLKLK 324

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
           ++          +F + V+HE++TPLT I GF+E++K+   G +   +  E+   I +  
Sbjct: 325 RE----------EFTSNVTHELKTPLTIISGFAELLKS---GNVEEEKIKEFGGIIYKQS 371

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
             +  +++DLL ISK+E+    +  E +SLDE   E    + +    K + +   F    
Sbjct: 372 TNLQRLIDDLLKISKLEANDAVI-IEELSLDELGDEVCDDLAIEIKNKNLNLVKDFDRVK 430

Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELE 754
            ++      +K+  +N+L+NAI +   GG+I            ++++ D G+G+    L+
Sbjct: 431 AKVNG--EMIKEAMMNLLTNAIKYNRDGGEIEFKIAKED-GFALVQISDNGIGIEEELLD 487

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           +  + F  + NS+  +   TGLGL + K +V+A+ G+  + S   KG+   I  PL
Sbjct: 488 RIFERFYVVDNSRSKKISSTGLGLSIVKHIVEAHGGRIEVTSEIGKGSTFTIYLPL 543


>gi|300694733|ref|YP_003750706.1| two-component transcription regulator and sensor protein [Ralstonia
           solanacearum PSI07]
 gi|299076770|emb|CBJ36109.2| putative two-component transcription regulator and sensor protein
           [Ralstonia solanacearum PSI07]
          Length = 796

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 99/633 (15%), Positives = 210/633 (33%), Gaps = 47/633 (7%)

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           ++  G               +P      + +  +      H       +       +   
Sbjct: 35  DLLDGTRLHVSAAAPQRWGMAPDTLCGPRERWLAHVHPGDHAALRAAWQGLA----QGRD 90

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS----HRNHPSLSAYFDEGENLTPE 324
              +  +   +  ++  ++    L   +  +   +             A   E E     
Sbjct: 91  FALEYRWIGTDGAEHRVRECGYRLPAQAGAATHAVGVVEDMTQRLQALAELTESEFQLQW 150

Query: 325 TVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
             +  P P   +     + +AN ++       + D +        + +         +  
Sbjct: 151 LAESIPFPIVQLGPDHRIRFANHAYAQRFGLPAADVLGR-----HVRELMGHEAYQRVLA 205

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
            ++       +     L       +    +      +     + +    I  +  + +  
Sbjct: 206 HLMKGFAGQRVDFEMEL-EYPHAGQGRRFIHAAYTPQRGADGKVVALVCIIEDITERKEA 264

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF-LE 502
           +R+      +  +++E   D IA ++     +  NRAV++ FG P  +++ +  +   L 
Sbjct: 265 ERERFRHQREFVTLVENAPDIIARLDPALRCVYINRAVTEAFGVPSGELIGRALSDSGLP 324

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTM 558
                 +             Q L           +++     +              L +
Sbjct: 325 ACVTGPLEAAARCAFDTGGEQALTLQLEADATRLRVMHYNARVIPEADRHGEIESALLII 384

Query: 559 HDISEWKQEKNKL-------SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
           +D++E  +   +          A+  AE  +  +  FLA VSHE+R+PL  I  ++ V++
Sbjct: 385 YDVTERAEAGRERDALLVREQVARAQAEAATHARDQFLAVVSHELRSPLNGIQSWAYVLE 444

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
           NQ     G          I       + ++ DLLD +++ SGK+ L  +P  L  A+  A
Sbjct: 445 NQLAD--GPQLIQRALAGIRTGVAQQVRLIEDLLDATRVMSGKLRLMRQPFPLRTALERA 502

Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
           +  V+  A E+RI +  +++     I  D   ++QI  N+LSNAI FT  GG + ++   
Sbjct: 503 LDSVRAQAAERRITVHEAWSLGAQEIDGDADRIQQIVWNLLSNAIKFTQEGGDVWLAADM 562

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG--------EGTGLGLPLAKA 783
           +  E   + VRD G G+    +     PF Q   S   R                   K 
Sbjct: 563 S-GEVARIAVRDNGRGIAPAFVPHLFDPFRQADGSHTRRTGGLGLGLAL--------VKR 613

Query: 784 MVDANMGKFYIFS-TPAKGTLIEIIFPLYDTSH 815
           + + + G  +  S    +G    +  PL++ + 
Sbjct: 614 LTELHGGLVHARSDGEQRGATFTVYLPLHEGAE 646



 Score = 70.8 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 40/400 (10%), Positives = 92/400 (23%), Gaps = 17/400 (4%)

Query: 56  DQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIG 115
           D  Q   +     +SE    +            +     ++  +    +  G  A  ++G
Sbjct: 130 DMTQRLQALAELTESEFQLQWLAESIPFPIV-QLGPDHRIRFANHAYAQRFGLPAADVLG 188

Query: 116 MRLCDV-SDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNRE 174
             + ++     +     H+      Q   +     +P  G      I  A  P    + +
Sbjct: 189 RHVRELMGHEAYQRVLAHLMKGFAGQRVDFEMELEYPHAGQGRRF-IHAAYTPQRGADGK 247

Query: 175 FSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP---- 230
                   I+       +      R  ++F  L E      +                  
Sbjct: 248 VVAL--VCIIEDITERKEAERERFRHQREFVTLVENAPDIIARLDPALRCVYINRAVTEA 305

Query: 231 --PPHLRMKNKVSSLTEYYAHKDDVLKTEKY-PLLTSEESSLPEQEDFHTINLNQYTKKQ 287
              P   +  +  S +   A     L+        T  E +L  Q +     L       
Sbjct: 306 FGVPSGELIGRALSDSGLPACVTGPLEAAARCAFDTGGEQALTLQLEADATRLRVMHYNA 365

Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPS 347
                 +   E    L      +  A      +                      +A   
Sbjct: 366 RVIPEADRHGEIESALLIIYDVTERAEAGRERDAL-----LVREQVARAQAEAATHARDQ 420

Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
           FL +  ++    +      + +L+         I+  +                 +   R
Sbjct: 421 FLAVVSHELRSPLNGIQSWAYVLENQLADGPQLIQRALAGIRTGVAQQVRLIEDLLDATR 480

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
             S  +  +      +       + +  +  + RI   + 
Sbjct: 481 VMSGKLRLMRQPFPLRTALERALDSVRAQAAERRITVHEA 520


>gi|254473454|ref|ZP_05086851.1| histidine kinase sensor protein [Pseudovibrio sp. JE062]
 gi|211957570|gb|EEA92773.1| histidine kinase sensor protein [Pseudovibrio sp. JE062]
          Length = 463

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 89/249 (35%), Positives = 149/249 (59%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           ISE +Q       A++ AE+ +  K+ FLA +SHE+RTPL AI+GFSEV+K++  GP+ N
Sbjct: 186 ISEMEQVNAISQEARRRAEEANLAKTRFLATMSHELRTPLNAILGFSEVMKDEVLGPMHN 245

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
             Y++Y+  I++SG  +L+++N++LD+S+IE+G+  L  EPV L +  +    ++ + A 
Sbjct: 246 QTYLDYSKDINQSGQHLLNLINEILDLSRIEAGRYELQEEPVCLRDVAAACKHMMHMRAA 305

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
            K I I   +   + ++ AD ++++Q+ LN+L+NA+ FTP  G+I I           + 
Sbjct: 306 AKNIEIHEVYEKGLSKVWADEKALRQMVLNLLTNAVKFTPPEGEISIHVGIDGAGGQYIS 365

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V DTG G+   E+   ++ FGQ   + Q   +GTGLGL + +A+   + G+F + S   +
Sbjct: 366 VSDTGAGIPEEEIPVVLQAFGQGTQAIQDAEQGTGLGLSIVQALAHMHEGEFKLASKLRE 425

Query: 801 GTLIEIIFP 809
           GT   I  P
Sbjct: 426 GTQATISLP 434


>gi|169237189|ref|YP_001690395.1| putative signal-transducing histidine kinase / response regulator
           [Halobacterium salinarum R1]
 gi|167728255|emb|CAP15047.1| putative signal-transducing histidine kinase / response regulator
           [Halobacterium salinarum R1]
          Length = 839

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 105/729 (14%), Positives = 242/729 (33%), Gaps = 66/729 (9%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147
           +D   + + +++      G    +MIG     +     +   N  +  +++    W G+T
Sbjct: 161 LDEDEHFRYVNQSFADLYGYEPAEMIGEHWELIYPDEEVQAINEEVLSIVEETGYWRGET 220

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
           T    + +       L+                           +     + + +++  +
Sbjct: 221 TGLRADDSTFIEAHTLSQT---DEGGLI------CTARDITEAQEQAQELEEVTQQYRTV 271

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMK--NKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
            E  +    + ++    F        L       + +  E     +      ++     +
Sbjct: 272 VEQSRAGIRIVQDGTVKFVNDRLAEMLGYPKHELLGAPAEEIITSETEDIVRRHHATRMQ 331

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
               P++ +                  +         LS     +     ++        
Sbjct: 332 GEPAPDRYEVEVDTEAGDRLCVELSVARIQYAGKPASLSLIRDITERKEGEQALERYAAL 391

Query: 326 VDKCPIP--FFVYSHGN--LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
            D  P       Y      +  ANP+F  L      D +         +D    S +   
Sbjct: 392 FDNAPDATALVEYRDETPIIRDANPAFEALFAGGDGDIVGQD------IDGVVASSDQVA 445

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
           +   + +  +        L     +   +     +P E   +  E      I P+  + +
Sbjct: 446 EARTISQQVQEGEPIQKELTRETADGLRTFDFRSVPVEDR-ETGEIESAFVIYPDITERK 504

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
            ++R++E    +  +++EAT+D + +++ EG     + A+ +  GY  E +L +  +  +
Sbjct: 505 AHRRELE----RYETLVEATADPMYMLDEEGRFTYVDDAMVETTGYSEETLLGEHVSKVM 560

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTM 558
           E++        +  +LS   ++      +  T   +  S    I  L         +  +
Sbjct: 561 EEDHVERGEQLIESLLSSGEKRG-TFEMVIETAGGERFSTENHISLLDGDGEFHGTAGVL 619

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            DI++  + + +L   +           +F + VSH++R PL    G  E+         
Sbjct: 620 RDITDRLERERQLKRERDRL-------DEFASVVSHDLRNPLNVAEGRLELAMENCES-- 670

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
                 E+ + + +S + +  +++D+L +++  +G+     EPV L + V      V+  
Sbjct: 671 ------EHHDSVAQSLDRMESLIDDVLSLAR--AGEAVGETEPVELADLVEACWQTVET- 721

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738
                +++ T        I AD   ++Q+  N+L NA+     G  + I+     +    
Sbjct: 722 -ASAGLVVETET-----TIQADPSRLQQLFENLLRNAVEHG--GEDVTITIGDLPDG--- 770

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
             V D G G+   E          +        +GTGLGL + + + +A+  +  +  + 
Sbjct: 771 FYVEDDGQGIPEDERGNV------LDAGYSTAADGTGLGLSIVREVAEAHGWEIEVTESS 824

Query: 799 AKGTLIEII 807
             G   EII
Sbjct: 825 DGGARFEII 833



 Score = 88.9 bits (219), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 35/372 (9%), Positives = 97/372 (26%), Gaps = 17/372 (4%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
            I   G +K +++ L + +G    +++G    ++      D          +      + 
Sbjct: 280 RIVQDGTVKFVNDRLAEMLGYPKHELLGAPAEEIITSETEDIVRRHHATRMQGEPAPDRY 339

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRG-FGIVHVNRVDNDPRALGKRLDKKFSH 206
            +         + ++L+   I     +++G      ++       +     +R    F +
Sbjct: 340 EVEVDTEAGDRLCVELSVARI-----QYAGKPASLSLIRDITERKEGEQALERYAALFDN 394

Query: 207 LHEIKKGHSSVEKEKY--DIFSQQSPPPHLRMKNKVS-SLTEYYAHKDDVLKTEKYPLLT 263
             +        ++     D              + V   +    A  D V +        
Sbjct: 395 APDATALVEYRDETPIIRDANPAFEALFAGGDGDIVGQDIDGVVASSDQVAEARTISQQV 454

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
            E   + ++    T +  +    +        + E           +             
Sbjct: 455 QEGEPIQKELTRETADGLRTFDFRSVPVEDRETGEIESAFVIYPDITERKAHRRELERYE 514

Query: 324 ETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
             V+    P   +   G   Y + + +  T Y     +           +  + +++  +
Sbjct: 515 TLVEATADPMYMLDEEGRFTYVDDAMVETTGYSEETLLGE-------HVSKVMEEDHVER 567

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
              L  S  +          +          T       +   E     G+  +  D   
Sbjct: 568 GEQLIESLLSSGEKRGTFEMVIETAGGERFSTENHISLLDGDGEFHGTAGVLRDITDRLE 627

Query: 443 NKRKMEIEVMQL 454
            +R+++ E  +L
Sbjct: 628 RERQLKRERDRL 639



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 20/150 (13%), Positives = 50/150 (33%), Gaps = 4/150 (2%)

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
               +     R    +   L +I E   +GI+I++ +      N++ + L+GY   +++ 
Sbjct: 129 NRITNHVERVRAQRKQQRHLDAI-ETAQEGISILDEDEHFRYVNQSFADLYGYEPAEMIG 187

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554
           + + +         +N  +  I+           T G   ++    +             
Sbjct: 188 EHWELIYPDEEVQAINEEVLSIVE--ETGYWRGETTGLRADDSTF-IEAHTLSQTDEGGL 244

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
             T  DI+E +++  +L    +        
Sbjct: 245 ICTARDITEAQEQAQELEEVTQQYRTVVEQ 274



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/260 (12%), Positives = 70/260 (26%), Gaps = 10/260 (3%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTWY 144
            + +D  G    + + + +T G     ++G  +  V +  H++     I  LL       
Sbjct: 524 MYMLDEEGRFTYVDDAMVETTGYSEETLLGEHVSKVMEEDHVERGEQLIESLLSSGEKRG 583

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
               +    G       +     +   + EF G  G  ++       +     KR   + 
Sbjct: 584 TFEMVIETAG-GERFSTENHIS-LLDGDGEFHGTAG--VLRDITDRLERERQLKRERDRL 639

Query: 205 SHLHEIKKGHSS----VEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
                +          V + + ++  +     H     +     E        L      
Sbjct: 640 DEFASVVSHDLRNPLNVAEGRLELAMENCESEHHDSVAQSLDRMESLIDDVLSLARAGEA 699

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
           +  +E   L +  +     +   +      T +   +     L       L    + G  
Sbjct: 700 VGETEPVELADLVEACWQTVETASAGLVVET-ETTIQADPSRLQQLFENLLRNAVEHGGE 758

Query: 321 LTPETVDKCPIPFFVYSHGN 340
               T+   P  F+V   G 
Sbjct: 759 DVTITIGDLPDGFYVEDDGQ 778


>gi|163802963|ref|ZP_02196850.1| sensor histidine kinase/response regulator [Vibrio sp. AND4]
 gi|159173253|gb|EDP58081.1| sensor histidine kinase/response regulator [Vibrio sp. AND4]
          Length = 931

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 83/259 (32%), Positives = 137/259 (52%), Gaps = 10/259 (3%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           + + +  +L  AKK A++ +  KS+FLA +SHE+RTPL  +IGF+  +   +        
Sbjct: 269 QLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQMSN----S 324

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
            ++Y   I++S N +L+I+ND+LD SK+E+GK+ L   P    E++ E I+L    A+EK
Sbjct: 325 QMDYLQTIEKSANNLLNIINDILDFSKLEAGKLALENIPFEFRESLEEVINLQATSAHEK 384

Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT----SNEEV 737
            + I       IP+ ++ D   ++QI  N++ N+I FT  G  I IS         + E+
Sbjct: 385 SLEITLKIDPKIPQGLVGDPLRIQQILTNLVGNSIKFTERG-NIDISVEMRSQSGDSVEL 443

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
              VRDTG+G++  +  +  + F Q   S   R  GTGLGL + + +V    G+  + S 
Sbjct: 444 QFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSR 503

Query: 798 PAKGTLIEIIFPLYDTSHP 816
             +G+       L+ T  P
Sbjct: 504 LHQGSTFWFTLRLHSTEIP 522


>gi|213648276|ref|ZP_03378329.1| hybrid sensory histidine kinase BarA [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
          Length = 855

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 87/333 (26%), Positives = 154/333 (46%), Gaps = 17/333 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +FG+ +   +  P    +               L   +   +             +++ +
Sbjct: 193 IFGWRLMRDVTGPIRNMVNTVDR-----IRRGQLDSRVEGFMLGELDMLKNGINSMAMSL 247

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 248 AAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTP 307

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+ +          NP   ++ N I+RS N +L I+ND+LD SK+E+GK+ L  
Sbjct: 308 LNGVIGFTRLTLKTEL----NPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILES 363

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P  L   + E ++L+   +++K + +  +  N++P  ++ D   ++Q+  N++ NAI F
Sbjct: 364 IPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPENVIGDPLRLQQVITNLVGNAIKF 423

Query: 719 TPSGGQ-IIISTTHTSNEEVILRV--RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T SG   I++     SN +V + V  RDTG+G+   +  +  + F Q   S   R  GTG
Sbjct: 424 TESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTG 483

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           LGL + + +V+   G     S P +G+      
Sbjct: 484 LGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516


>gi|325959504|ref|YP_004290970.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanobacterium sp. AL-21]
 gi|325330936|gb|ADZ09998.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanobacterium sp. AL-21]
          Length = 573

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 86/528 (16%), Positives = 192/528 (36%), Gaps = 40/528 (7%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDD-------I 360
                  ++ ++   +  +  P+ +F +   G +   N +  LL   + ++         
Sbjct: 55  RVAQLKLEDSKHKYFDLYNYAPVGYFTLNKDGIILDVNLAGALLLGVERLNLQKSAFIQY 114

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP--- 417
                 +                    +  +      A L T++        + F     
Sbjct: 115 IDPACRNEFHHHIMNVKKQRKDQTANIKLLKMNDPFYAHLETVKVLDNEGNLIEFRMSVF 174

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
                +  E   +      ++      ++++       S++EA+ D +  I  +G I   
Sbjct: 175 DINELKTTEEALKQIKHNLELKVEERTQELKSANEYNRSLIEASLDPLVTIGPDGKITDV 234

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
           N +  K  G    +++   F+ +  +  P        ++        L+       K   
Sbjct: 235 NSSTEKFTGCTRNELIGSDFSDYFTE--PEKAREGYQQVFKEGY--VLDYPLEIKNKNRH 290

Query: 538 LLSLRIIIK----KLPFSSCYSLTMHDISEWKQEKNKLSHAK-----------KIAEKES 582
              +         K            DI+  K+ + KL   +           K  ++ +
Sbjct: 291 TTPVLYNATVYKNKFNEVIGVFAAARDITGIKKAERKLIKYQDTLEKKVNERTKALKQSN 350

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
               +F    SH+++ PL  I  F ++++ +    L N    ++  +       + +++N
Sbjct: 351 KELKEFAYVASHDLKEPLRMITTFLQLLERRYKDKLDNE-ANDFIRFAVEGSKRMDNMIN 409

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702
           DLL+ S+I  G     FE +  ++ +   +  ++    +   +I       +P I A+ +
Sbjct: 410 DLLEYSRI--GNQEREFEYLQSEKLLDTVLMNLKSSITDTNAIITHD---PLPLIFANEQ 464

Query: 703 SVKQIALNILSNAIHF-TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761
            + Q+  NI+SN+I +      +I IST + ++E + + ++D G+GM    L+K    F 
Sbjct: 465 LMIQLFQNIISNSIKYHGEKNPEIHISTDNANDEYIFI-IKDNGIGMNQNHLKKIFTIFQ 523

Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           ++    +   EGTG+GL + + +V  + GK ++ S   KGT      P
Sbjct: 524 RLH--TREEYEGTGIGLAIVQKIVQKHRGKIWVESELGKGTTFYFTIP 569



 Score = 60.0 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 64/167 (38%), Gaps = 7/167 (4%)

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
            + Q  +E ++ + R+ + K+E    +   +      G   +N++GIIL  N A + L G
Sbjct: 41  RVHQIELEMQNEELRVAQLKLEDSKHKYFDLYNYAPVGYFTLNKDGIILDVNLAGALLLG 100

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
               ++ +  F  +++    +  +H++  +      QT     L   K        +   
Sbjct: 101 VERLNLQKSAFIQYIDPACRNEFHHHIMNVKKQRKDQTANIKLL---KMNDPFYAHLETV 157

Query: 547 KLPFSSCYSLTMH----DISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
           K+  +    +       DI+E K  +  L   K   E +   ++  L
Sbjct: 158 KVLDNEGNLIEFRMSVFDINELKTTEEALKQIKHNLELKVEERTQEL 204


>gi|94267479|ref|ZP_01290888.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93451988|gb|EAT02695.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 529

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 91/392 (23%), Positives = 164/392 (41%), Gaps = 40/392 (10%)

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             +     R+ E  +  L +I+    DG+ + N    I   N A     G    +     
Sbjct: 136 VAELAAKTREQENTLSYLNAIIGNIPDGLLVTNDRARITMANPA----LGGMFREAAGGN 191

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---- 552
                 +   +     +   +S   +Q +           ++ S          +     
Sbjct: 192 LVGRDCREVFADSLGPMLAAISTSQQQAVTVQVEL--AGGRIGSAIGTAIYRGGAGQEEF 249

Query: 553 -CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
             Y + + DI+  K+ +                K DF++ VSHE+RTPLT+++GF+ +I 
Sbjct: 250 IGYLIVVRDITHQKEIE--------------RMKDDFVSAVSHELRTPLTSVLGFARLIA 295

Query: 612 NQRFG------PLGNPRYI-------EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
            +  G      P  +PR         +  N I   G  +  ++N++LD+SK+E+GK+   
Sbjct: 296 KKLEGVILPVVPRQDPRVERAVRQVGDNINIIVTEGERLTKLINEVLDLSKMEAGKVEWQ 355

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718
            EPV+ +E V  A+        E    + +     +P +  D   + Q+ +N+++NA  F
Sbjct: 356 LEPVTAEEIVKRALDATTGLFGEGAPELLSEVEPELPVLCCDRDRIMQVLINLIANARKF 415

Query: 719 TPSGGQIIISTTHTSNEE-VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
           T  G ++ +     + EE V+  V D+G G+T   L+   + F Q+ ++   R +GTGLG
Sbjct: 416 TDHG-RVTVRARRAAGEEAVLFEVSDSGCGITPENLQSVFEKFKQVGDTLTDRPKGTGLG 474

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           LP+ K +V+ + G     STP  G+      P
Sbjct: 475 LPICKEIVEYHGGTVTAESTPGAGSTFRFTLP 506


>gi|153864037|ref|ZP_01997058.1| signal transduction histidine kinase [Beggiatoa sp. SS]
 gi|152146467|gb|EDN72941.1| signal transduction histidine kinase [Beggiatoa sp. SS]
          Length = 612

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 78/263 (29%), Positives = 140/263 (53%), Gaps = 18/263 (6%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E ++ +  +    K  E  S +KS+FLA +SHE+RTPL +++  ++++ N + G L N +
Sbjct: 35  EMEKARAAIEFKAKELELASQYKSEFLANMSHELRTPLNSLLILAQLLANNKPGNL-NEK 93

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
            + YA  I  +G+ +L ++ND+LD+SK+E+GKM ++ E +SL + +          A+EK
Sbjct: 94  QVSYAQTIQSAGSDLLTLINDILDLSKVEAGKMEVNIEALSLSDLLEMLEQKFSPLASEK 153

Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----- 736
            ++     A+++P  +  D + +KQI  N+LSNA  FT  G +I++S    +N E     
Sbjct: 154 GLVFEKRLADDLPPFLQTDGQRLKQILNNLLSNAFKFTSLG-KIVLSIQRVTNIEDESYQ 212

Query: 737 ----------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
                     + + V DTG+G+   + +   + F Q+  +   R  GTGLGL +++ +  
Sbjct: 213 LGKMEARENLIAISVIDTGIGIPKDKQQLIFEAFQQVDGTTSRRYGGTGLGLSISRQLAR 272

Query: 787 ANMGKFYIFSTPAKGTLIEIIFP 809
              G+  + S    GT   +  P
Sbjct: 273 LLGGEITLHSEEGSGTTFTLYLP 295


>gi|301052639|ref|YP_003790850.1| sensor histidine kinase [Bacillus anthracis CI]
 gi|300374808|gb|ADK03712.1| sensor histidine kinase [Bacillus cereus biovar anthracis str. CI]
          Length = 896

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 78/338 (23%), Positives = 146/338 (43%), Gaps = 18/338 (5%)

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            +D++ +            +    +  +L      T E        + +   L++  ++L
Sbjct: 395 HQDLIHQTVDNLGLTIHSIMGRMRIQTLLHESQAMTEELQVQSEELQTQAEELQMQAEEL 454

Query: 549 PFSSCYSLTMHDISEWKQEKN-----KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
             ++    +  + +E K         +L        + S +KS+FLA +SHE+RTPL +I
Sbjct: 455 RTTNEQLESRTEEAEQKTADLQITKLELEEKASELLRSSKYKSEFLANMSHELRTPLNSI 514

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +  SE++K      L +    E A  I  SG  +L ++ND+LD+SK+E+GK+++ F   +
Sbjct: 515 LLLSEMLKENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIFGATN 573

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSG 722
           + +  +         A +K +      ++ IP +   D + ++QI  N+LSNA  FT  G
Sbjct: 574 ISDMAASMHQNFLHIAAQKNVEFTVEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKG 633

Query: 723 GQ------IIISTTHTS-----NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
                   I  S           + + + V+DTG+G+   + +   + F Q   +   + 
Sbjct: 634 SVSLHFDSIETSNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGATIRKY 693

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            GTGLGL + K       G   + S   +G+   +  P
Sbjct: 694 GGTGLGLSICKEFARLLGGWITLESHVGEGSTFTVYIP 731


>gi|261822787|ref|YP_003260893.1| hybrid sensory histidine kinase BarA [Pectobacterium wasabiae
           WPP163]
 gi|261606800|gb|ACX89286.1| multi-sensor hybrid histidine kinase [Pectobacterium wasabiae
           WPP163]
          Length = 928

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 93/343 (27%), Positives = 154/343 (44%), Gaps = 19/343 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +F Y +   +  P    +       ++      L   +   +             +++ +
Sbjct: 190 IFAYRLMRDVTTPIRNMV-----DTVDRIRRGQLDSRVEGYMLGELDMLKNGINSMAMSL 244

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                          +D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 245 TAYHEEMQQNIDQATYDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTP 304

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+     Q      N    +Y   I+RS N +L+I+ND+LD SK+E+GK+ L  
Sbjct: 305 LNGVIGFT----RQTLKTSLNTTQTDYLLTIERSANNLLNIINDVLDFSKLEAGKLVLED 360

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P SL   + + + L+   A+EK + +  S  N++P   + D   ++QI  N+L NAI F
Sbjct: 361 IPFSLHSTLDDVVMLLAHTAHEKGLELTLSIQNDVPEQYVGDPLRIQQIITNLLGNAIKF 420

Query: 719 TPSGGQ-IIISTTHTSNEEVILRVR--DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T  G   I +      + +V L V+  DTG+G+   +  +  + F Q   S   R  GTG
Sbjct: 421 TEQGNIDIRVEKRRQEHHQVQLEVQICDTGIGIAELQQSQLFQAFRQADTSISRRHGGTG 480

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTL--IEIIFPLYDTSHP 816
           LGL + + +V    G     S   KG+     I  PL   + P
Sbjct: 481 LGLVITQRLVKEMGGDISFQSQLNKGSTFWFHITLPLNPHTVP 523


>gi|238765164|ref|ZP_04626096.1| Phosphate regulon sensor protein phoR [Yersinia kristensenii ATCC
           33638]
 gi|238696598|gb|EEP89383.1| Phosphate regulon sensor protein phoR [Yersinia kristensenii ATCC
           33638]
          Length = 438

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 63/358 (17%), Positives = 131/358 (36%), Gaps = 35/358 (9%)

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
           +  S  E+  D + +   +G I   N    +L G+   +   +     L     S     
Sbjct: 99  RFRSGAESLPDAVVMTTIDGNIFWCNGLAQQLLGFRWPEDNGQHILNLLRYPEFSQYL-- 156

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572
                    +Q   +           +  R++           +   D+++ +Q +    
Sbjct: 157 --------QQQEFSRPLTLQLNNGYYVEFRVMPY---SEGQLLMVARDVTQMRQLEG--- 202

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
                       + +F A VSHE+RTPLT + G+ E++ +Q        +       +  
Sbjct: 203 -----------ARRNFFANVSHELRTPLTVLQGYLEMMHDQELAGPLRDKA---LGTMQE 248

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN-EKRILIRTSFA 691
               +  +V  LL +S+IE+       E V +   +      VQ  +     I  R +  
Sbjct: 249 QTKRMDGLVKQLLTLSRIEAAPNVDMNEQVDIPRMLKILQHEVQALSGGRHEITFRVN-- 306

Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751
            +  ++  +   ++    N++ NA++ TP G +I +    T+      +V D G G+   
Sbjct: 307 -DQLKVFGNEDQLRSAVSNLVYNAVNHTPDGTKIEVCWQKTAQG-AQFQVSDNGPGIGPE 364

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            + +  + F ++  ++  +  G+GLGL + K  +  +  +  + S    GT      P
Sbjct: 365 HVPRLTERFYRVDKARSRQTGGSGLGLAIVKHALSHHDARLDVMSEIGLGTRFIFTLP 422


>gi|17988310|ref|NP_540944.1| alkaline phosphatase synthesis sensor protein phoR [Brucella
           melitensis bv. 1 str. 16M]
 gi|17984083|gb|AAL53208.1| alkaline phosphatase synthesis sensor protein phor [Brucella
           melitensis bv. 1 str. 16M]
          Length = 768

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 131/724 (18%), Positives = 263/724 (36%), Gaps = 49/724 (6%)

Query: 110 AFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN--TWYGKTTLWPIEGTNLYVPIDLAALP 167
              ++G                  G  L+ Q+        +    +     + ++     
Sbjct: 59  RADVVGQLPDACGAPQDRPAFLAFGRWLRPQSVTALERAISTLREQARAFDLTVETVNGS 118

Query: 168 IYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ 227
           +   +   SG  GF +    +     +A    L+ +   L +  +    +          
Sbjct: 119 LLDVHGRTSG--GFAVA-CFQSLQGVQAERASLEAQNRELADRIELMRRLLDRIEQPAWL 175

Query: 228 QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287
           +     +   N   +     A+    + +E   L  ++     E++ F    + +     
Sbjct: 176 RDGNGRIEWVNLAYAQAVDMANASQ-VISEGRELFGAQARQRLERDRFAEPVVQEQLTAV 234

Query: 288 YFGTLQ--------NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG 339
             G  +          S             ++            ET+D+      ++   
Sbjct: 235 VHGDRRVFDVIDVSAESGSVGLGFDLTEVQAVRDELSRTLKSHAETLDQLSTAVAIFDPE 294

Query: 340 -NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398
             L + N +F+ L     V  +E     + + D  +       +P      D    A  A
Sbjct: 295 MKLQFFNQAFVKLWGL-DVAWLETRPSNTLIFDRLRAEGKLPEQPEWRKWKDSLLSAYRA 353

Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI- 457
                    E    M  +P  +  +   N    G      +    K ++E     L  + 
Sbjct: 354 V--------EPEEHMWHLPDTRTMRVVANPHPQGGVTWFFENMTEKFELEGRYNTLIKVQ 405

Query: 458 ---LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYL 513
              L+  ++ +A+   +G +  +N + + L+  P E +      ++  +       +   
Sbjct: 406 GETLDHLAEAVAVFGSDGRLRLSNPSFAALWSLPSEMVREGTHISIIAKLCNQRGGDGLW 465

Query: 514 TEILSLDLRQTLEKITL---GSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570
            + +S       ++          +  +LS  ++           LT  D+++  + +  
Sbjct: 466 EDFVSTVTGFLDQRDGRMGQVELSDGAILSFAVVPLP---KGQTMLTFIDVTDTVRVERA 522

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           L    +  E     K+DF+  VS+E+R+PLT IIGF+E+++   FG L N R +EY ++I
Sbjct: 523 LKEKNEALELADQIKNDFVQHVSYELRSPLTNIIGFTELLQTPAFGSL-NERQLEYLDHI 581

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
             S +++L IVND+LD++ +++G M L    VS+ EA+S A S V     +  I +    
Sbjct: 582 STSSSVLLTIVNDILDLATVDAGIMELEIGDVSVVEAISAAASRVSERLRDHNIGLDVDI 641

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
           A+++    AD   V+Q+  N+LSNA+++ P G  I++        +V+  V D G GM +
Sbjct: 642 ADDVDVFKADANRVRQVLFNLLSNAVNYAPEGSNIVLQVA-RDGADVVFAVHDDGHGMPS 700

Query: 751 YELEKAMKPFGQIPN-----SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
             L+   K F   PN        +          + K+ V+ + G+  I +   +GT + 
Sbjct: 701 EVLDTVFKRFQSYPNGGRRRGAGLGLA-------IVKSFVELHGGRVEIDTGEERGTTVI 753

Query: 806 IIFP 809
             FP
Sbjct: 754 CRFP 757


>gi|310827685|ref|YP_003960042.1| hypothetical protein ELI_2096 [Eubacterium limosum KIST612]
 gi|308739419|gb|ADO37079.1| hypothetical protein ELI_2096 [Eubacterium limosum KIST612]
          Length = 856

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 79/250 (31%), Positives = 121/250 (48%), Gaps = 8/250 (3%)

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           +Q +  L   K+ AE+ S  KSDFL+++SHEIRTP+  I+G +EV    R       R  
Sbjct: 322 RQIQRLLMAEKEKAERASQAKSDFLSQMSHEIRTPMNGIVGMTEV---GRRYTHNPARIE 378

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
              + I  S   +L +VND+LD+SKIESGK+ LH E     +      ++    A E+ I
Sbjct: 379 NCLDKISLSTQHLLSLVNDILDMSKIESGKIELHEESFDFGQLFKALTTVFYTQARERGI 438

Query: 685 LIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH----TSNEEVIL 739
                    +   ++ D   + QI  N+LSNA+ FTP GG++ ++            +  
Sbjct: 439 EYNVYVNGALEDELVGDALRLNQILTNLLSNAMKFTPKGGKVCMTAEEIRRGEDRFWIGF 498

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            VRD+G G+    L +  + F Q  +    +  GTGLGLP+ K  V+   G   + S   
Sbjct: 499 EVRDSGCGIAKENLGRIFEVFTQEDSGVARKYGGTGLGLPITKRFVEMMGGSISVESQVG 558

Query: 800 KGTLIEIIFP 809
            G+   +  P
Sbjct: 559 SGSCFRVEIP 568


>gi|303245735|ref|ZP_07332018.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           fructosovorans JJ]
 gi|302492998|gb|EFL52863.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           fructosovorans JJ]
          Length = 685

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 117/674 (17%), Positives = 232/674 (34%), Gaps = 61/674 (9%)

Query: 182 GIVHVNRVDNDPRALGKRLDKKFSHLHEIK-KGHSSVEKEKYDIFSQQSPPPHLRMKNKV 240
           GIV +  +   P A         S   E + +G    E     +         LR+KN V
Sbjct: 19  GIVLIVGLITIPLAYLTWRAAAESLRAETRKRGMVLSENLAMRVSDAMLSMDLLRLKNMV 78

Query: 241 SSLTEYYAHK-DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
             L +        +L  +   L+ + +   P +        N     Q     +    + 
Sbjct: 79  DELKKVDDIVYAFILDRDGNVLVHTFKGGFPVELRTVNAPKNGAPHIQLLDDGREYIDDF 138

Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNL--------FYANPSFLLL 351
              +     P  +              D+  +    YS   +         +A      +
Sbjct: 139 AAPVVIVGTPFGTTRIGLSRTKAEAGADRLALMIVFYSATAMIAALAPSTLFARRVTERI 198

Query: 352 TKYKSVDD------IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI----AASARLH 401
            + KS  +      ++   G   L     +   +          DR C            
Sbjct: 199 NRLKSHAEEVVKGNLDQRAGPRALFSCSSMLACDKTACPAYGDRDRRCWLTASPDQRGEG 258

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
                     A       +      ++    ++    + R  +R ++ +   L +IL+AT
Sbjct: 259 PESCRGCPVYAAQKGDEIQDLAETFDVMAVSLKTHLDELRRTERVLKRQERLLRTILDAT 318

Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
            D + +++     L+ NRA +       +DI+          +    M+      L L  
Sbjct: 319 PDLVCLLDENLAYLAVNRAFAAFVALDPQDIVGTTDRDIFPADEGMAMHD--ENALVLAS 376

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKI 577
            +  ++      +    + L ++   +  S         T  D+++ KQ + +L  ++K+
Sbjct: 377 SRPSDREVSLR-RNGTTVWLHVVRVPITDSRGRAIGLLRTARDVTQLKQFQEQLIQSQKM 435

Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
                         V+HEI TPL  I+G+++++++       + +       I++   + 
Sbjct: 436 -----ESLGKLAGGVAHEINTPLGVILGYAQLLQDDV---PTDSQIHADLQTIEKQAKVC 487

Query: 638 LDIVNDLLDISK-IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696
             IV DLL  S+  ES K+ + F     + ++ EAI+LV+   + +   I T   + +P 
Sbjct: 488 RKIVADLLGFSRQAESAKIEMCF-----NNSLMEAITLVRHAFSLEHAAIVTDLDDRMPI 542

Query: 697 ILADLRSVKQIALNILSNAIHFTP-SGGQIIISTTH-TSNEEVILRVRDTGVGMTNYELE 754
           I  D   +KQ+ +N+LSNA       GG +++ +    ++++V     DTG G+      
Sbjct: 543 IYGDPEKLKQVWINLLSNARDAMGWQGGTLLVRSRLFVADQKVTAWFADTGPGIPPENCS 602

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS--------------TPAK 800
           +   PF          G+GTGLGL ++  ++  + G   + S               P  
Sbjct: 603 RIFDPFFTTKP----VGQGTGLGLSVSFGIIQDHGGSISVQSPVPQGFFDNVDTGGAPGP 658

Query: 801 GTLIEIIFPLYDTS 814
           G +  +  PL    
Sbjct: 659 GAVFIVDLPLEHEE 672



 Score = 45.8 bits (107), Expect = 0.029,   Method: Composition-based stats.
 Identities = 13/112 (11%), Positives = 33/112 (29%), Gaps = 7/112 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D +     ++      +      ++G    D+         +    L+   +    +  
Sbjct: 325 LDENLAYLAVNRAFAAFVALDPQDIVGTTDRDIFPADEGMAMHDENALVLASSRPSDREV 384

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
                GT   V + +  +PI          R  G++   R     +   ++L
Sbjct: 385 SLRRNGTT--VWLHVVRVPITDSRG-----RAIGLLRTARDVTQLKQFQEQL 429


>gi|116621412|ref|YP_823568.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Solibacter
            usitatus Ellin6076]
 gi|116224574|gb|ABJ83283.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Solibacter
            usitatus Ellin6076]
          Length = 1149

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 109/723 (15%), Positives = 228/723 (31%), Gaps = 78/723 (10%)

Query: 130  NNHIGDLLKRQNTWYGKTTLWPIEG--TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187
            +N + + L+   +       +   G        I          + +    R  G+    
Sbjct: 319  DNAVREALRPG-SVGHFHAEYRTVGIDDGQERWITDMGRAFLDLDGQP--LRFIGVTLDI 375

Query: 188  RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP----------HLRMK 237
                      +R + +++   E  +    +  +   +  +                L   
Sbjct: 376  TERKRSEEELRRSEARWNAAIENLESGVIIATDTEQVIYRNPAALAMHGFPSDQRGLGTL 435

Query: 238  NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKK------QYFGT 291
              ++S+ + +     +L  + +PL   +        +     L+Q  +K          T
Sbjct: 436  QDMTSIFQLWTPDGRLLTLDDWPLRRIKRGETLNHLELRLCRLDQRWEKIISYSGALVET 495

Query: 292  LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI-PFFVYSH-----GNLFYAN 345
                        +  +  +      E E       D  P    + Y       G   Y +
Sbjct: 496  AIGERLMFVSAQNLTDQRNAEHALRESEERLRLLGDHLPDSAVYQYVDELGVPGRYTYFS 555

Query: 346  PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405
                 L        +     L + +    L     ++     R D +          ++ 
Sbjct: 556  AGLERLNGVTVEGVLRDKSTLHSQILPEHLGR--FMEAKSRSRRDLSDFDIEV---PMRR 610

Query: 406  NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465
                   + F    +       +  +G++ +    +  K  ++ +   L      + DG+
Sbjct: 611  GDGEICWIHFHSRPRRLPDGRTV-WDGVQTDVTAHKQAKDALKKQAELLRL----SYDGM 665

Query: 466  AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
             +   +G I + N    +L+GY   + + K     L    P      L E+       + 
Sbjct: 666  IVWKLDGTIENWNIGAERLYGYSETEAVGKLTHALLAPQFPKPWGEILKEMRIAG---SW 722

Query: 526  EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM---HDISEWKQEKNKLSHAKKIAEKES 582
            E      T++   + +   I+ +  S      +    DI++ K+ + +    +K+     
Sbjct: 723  EGELRQQTRDGSEVVVSARIQLIKGSDGIDRVLEVNRDITDAKRAQFEAFARQKL----- 777

Query: 583  SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
                   + ++H+    L A++  +E+  +            E    I        DIV 
Sbjct: 778  ESLGTLASGIAHDFNNLLGAVLAQAELAASGLAAGASP---HEELETIKEVAIRGSDIVR 834

Query: 643  DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702
             L+    I +G  +   EP+ + + V E  SL++  A  KR+ + T    ++P + A   
Sbjct: 835  QLM----IYAGTESDVLEPIEISKTVEEMYSLLKA-AISKRVTLVTDLGEHVPAVQARTA 889

Query: 703  SVKQIALNILSNAIHFTPSGG-QIIISTT---------------HTSNEEVILRVRDTGV 746
             ++Q+ +N++ NA      GG  I ++T                    + V L V DTG 
Sbjct: 890  QLRQVLMNLVVNASDAIKGGGGVIRVTTRCVTLNPNSAGTTAYDLADGDYVELEVSDTGS 949

Query: 747  GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
            GM +    +   PF    +       G GLGL +   +V +  G   + S   KGT   I
Sbjct: 950  GMPHDIQARIFDPFFSTKS------PGRGLGLAVIHGIVRSLRGVIRVESEVGKGTTFRI 1003

Query: 807  IFP 809
            + P
Sbjct: 1004 LLP 1006



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 17/231 (7%), Positives = 62/231 (26%), Gaps = 11/231 (4%)

Query: 360 IEIAGGLSTLLDAPKLSDNNAIK-PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
           +E        L      D   +   V       +     A   T+  +      +T +  
Sbjct: 297 LEREFDYDIFLHGIHTEDRERVDNAVREALRPGSVGHFHAEYRTVGIDDGQERWITDMGR 356

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
              +   + +   G+  +  + + ++ ++     +  + +E    G+ I      ++  N
Sbjct: 357 AFLDLDGQPLRFIGVTLDITERKRSEEELRRSEARWNAAIENLESGVIIATDTEQVIYRN 416

Query: 479 RAVSKLFGYPVED------ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
            A   + G+P +                   +   +                        
Sbjct: 417 PAALAMHGFPSDQRGLGTLQDMTSIFQLWTPDGRLLTLDDWPLRRIKRGETLNHLELRLC 476

Query: 533 TKEEKL---LSLRIIIKKLPFSSCYSLT-MHDISEWKQEKNKLSHAKKIAE 579
             +++    +S    + +             ++++ +  ++ L  +++   
Sbjct: 477 RLDQRWEKIISYSGALVETAIGERLMFVSAQNLTDQRNAEHALRESEERLR 527



 Score = 43.9 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 23/234 (9%), Positives = 55/234 (23%), Gaps = 11/234 (4%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            W +D  G ++  +    +  G    + +G     +       P   I   ++   +W G
Sbjct: 667 VWKLD--GTIENWNIGAERLYGYSETEAVGKLTHALLAPQFPKPWGEILKEMRIAGSWEG 724

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +      +G+   V +      I   +      R   +          +       K  S
Sbjct: 725 ELRQQTRDGS--EVVVSARIQLIKGSDGI---DRVLEVNRDITDAKRAQFEAFARQKLES 779

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQS----PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
                             + +Q              ++     +  A +   +  +    
Sbjct: 780 LGTLASGIAHDFNNLLGAVLAQAELAASGLAAGASPHEELETIKEVAIRGSDIVRQLMIY 839

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
             +E   L   E   T+       K           +  E++      +     
Sbjct: 840 AGTESDVLEPIEISKTVEEMYSLLKAAISKRVTLVTDLGEHVPAVQARTAQLRQ 893


>gi|154495975|ref|ZP_02034671.1| hypothetical protein BACCAP_00258 [Bacteroides capillosus ATCC
           29799]
 gi|150274858|gb|EDN01914.1| hypothetical protein BACCAP_00258 [Bacteroides capillosus ATCC
           29799]
          Length = 580

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 95/575 (16%), Positives = 214/575 (37%), Gaps = 41/575 (7%)

Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302
           ++       ++L         ++  SL EQ +                 + +   +    
Sbjct: 33  MSAARQTLHELLIIMDAQSAITDPESLTEQFNQAAPEKRLTIIDADGTVVADTEADPATM 92

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFF----VYSHGNLFYANPSFLLLTKYKSVD 358
            +H +          G   +  + D            ++ G +  A+          S+D
Sbjct: 93  ENHADREEFKQAVATGWGESLRSSDTVGTTMLYEAKRFADGMVGRAS------MPVSSID 146

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
            +        ++ A        I    + R     +           + E         +
Sbjct: 147 GLVWDSAGGFVVAALVALVLALILASRMARMVLKPLNMVGEALQGVLDGEAEDKAALAAY 206

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
           E  ++    +       + +   I+  ++  E  ++  ILE   +G+ +++ EG +L+ N
Sbjct: 207 EADDEVRPLLRYIDKLMDRLSAYID--EIRAERDKVSLILECMDEGLILLDEEGHVLTLN 264

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
           R+  +LFG   +       +  L       +   L  + +      L+        + K 
Sbjct: 265 RSARRLFGLSDDSDG----SGILLLTRSRRLREALKTVRTEKTPVVLD--LDDPAFDGKS 318

Query: 539 LSLRIIIKKLP----FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
           L + +           +   S+ + D++E K+ +                +S+F A VSH
Sbjct: 319 LRMFLSPVTGRQYEGETVGASILISDVTELKRAEG--------------IRSEFTANVSH 364

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           E++TPLT+I GF++++ +             +   I    + +++++ND+L IS++ES  
Sbjct: 365 ELKTPLTSIKGFTDMLSSGMV--KSEEDRKRFLTMIGVEVDRLIELINDILRISELESVA 422

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714
           ++   E   +  A  E  +L++  A E  + +  +  N +  I      +K++ LN++ N
Sbjct: 423 IDQCEEASDVLTAARETQTLLEPAAKEAGVTLNVTGQNAMAAIPV--SRLKELLLNLMEN 480

Query: 715 AIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
            + +   GG + ++ +   +  V   V DTG+G+     ++  + F ++   +  +  GT
Sbjct: 481 GVKYNVKGGSVNVNVS-ADSAWVTTVVSDTGIGIPEDARKRVFERFFRVDKGRARKNGGT 539

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GLGL + K ++    G   + ST  +G+   +  P
Sbjct: 540 GLGLAIVKHIIQLYGGTVTLESTLGQGSTFTVKLP 574


>gi|52144326|ref|YP_082503.1| sensor histidine kinase [Bacillus cereus E33L]
 gi|51977795|gb|AAU19345.1| sensor histidine kinase [Bacillus cereus E33L]
          Length = 896

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 79/338 (23%), Positives = 147/338 (43%), Gaps = 18/338 (5%)

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            +D++ +            +    +  +L      T E        + +   L++  ++L
Sbjct: 395 HQDLIHQTVDNLGLTIHSIMGRMRIQTLLHESQAMTEELQVQSEELQTQAEELQMQAEEL 454

Query: 549 PFSSCYSLTMHDISEWKQEKN-----KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
             ++    +  + +E K         +L        + S +KS+FLA +SHE+RTPL +I
Sbjct: 455 RTTNEQLESRTEEAEQKTADLQITKLELEEKASELLRSSKYKSEFLANMSHELRTPLNSI 514

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +  SE++K      L +    E A  I  SG  +L ++ND+LD+SK+E+GK+++ FE  +
Sbjct: 515 LLLSEMLKENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIFEATN 573

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSG 722
           + +  +         A +K +      ++ IP +   D + ++QI  N+LSNA  FT  G
Sbjct: 574 ISDMAASMQQNFLHIAAQKNVEFTVEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKG 633

Query: 723 GQ------IIISTTHTS-----NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
                   I  S           + + + V+DTG+G+   + +   + F Q   +   + 
Sbjct: 634 SVSLHFDSIETSNLSDDMQSISKDWMTISVKDTGIGIAKEQHQLIFEAFQQADGATIRKY 693

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            GTGLGL + K       G   + S   +G+   +  P
Sbjct: 694 GGTGLGLSICKEFARLLGGWITLQSHVGEGSTFTVYIP 731


>gi|322419620|ref|YP_004198843.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           M18]
 gi|320126007|gb|ADW13567.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           M18]
          Length = 797

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 93/800 (11%), Positives = 221/800 (27%), Gaps = 65/800 (8%)

Query: 44  PCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRF-TWNIDAHGYLKEISEEL 102
           P            +   S             V   I RTV F  +  D  G         
Sbjct: 23  PGPAQAAAEPHPARPIPSY----------GQVLRNIFRTVSFGMYQTDLCGEWLH--PFA 70

Query: 103 PK---TIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYV 159
            +             G R   ++              ++    W  +      +G     
Sbjct: 71  CRGGLATDPRDEA--GPRAGYINPQERKALAASFECAMEAGMQWSRQFQYRCADGGIF-- 126

Query: 160 PIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEK 219
            +     P+        G++G             +      + +     E          
Sbjct: 127 WLHAVIAPLRDSRGAVIGYQGCNT--DITAQLAAQRELALSEDRHRAAIEAADLGIWDFD 184

Query: 220 EKY------DIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE 273
            +           +          +        +    D  +      +         + 
Sbjct: 185 VEGCDCYFTPYCYEMLGYKGQSQVSLQDWTNIIHPEYLDNARRMLEDCIDGGLEKFELEL 244

Query: 274 DFHTINLNQYTKKQYFGTL-QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC--- 329
              T     +  +     + ++ S ++F         + +   +    +  + ++     
Sbjct: 245 RLKTNEGKWHWFRCTCKAVGRDPSGKAFRLAGTLLDINQAKLMEHLLRMEHDLLNLITAT 304

Query: 330 -PIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
            P+   F+ S G+  +ANP    +        +             +  D+ + + + L 
Sbjct: 305 SPVGIMFIESDGHTVFANPRAERILGVSKKRMMAREERSLVSSIMSQERDDESGEELSLA 364

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
              +T                 S  ++       +Q  +         +  + +  ++ +
Sbjct: 365 DIMKTGRCLLNACFLFTRPDGASTILSISTAPFLDQASKVSGTVVTLEDVTEEKQREQVL 424

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR-KPFTVFLEQNTP 506
                 L         G  +++        +  + ++ G         +     + +   
Sbjct: 425 SDNDRLLRETQRIAQLGSYVLDFAQNHWDCSIKLEEILGIDDPYPKTLQGHFDIVHEEFR 484

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDIS 562
                     +S      +E   +   K+ K   +    +     +        T+ DI+
Sbjct: 485 DQFEENYRCAISNARPFEMEYK-IKRQKDGKERWVTECCELARDGAGKQLRMIGTIKDIT 543

Query: 563 EWKQEKNKLSHAKKIAEK-----------ESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
           E K  +  +       ++                  F   VSH++R PL  I  +S ++ 
Sbjct: 544 ERKAAEEAIRSLNDELDRRVIERTSQLVAAKKEIESFSYSVSHDLRAPLRHINSYSSILV 603

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
            +    L       Y   I  + + +   ++DLL ++++  G+  +     ++ +  +E 
Sbjct: 604 EEHRDALP-EEARYYLERICTASSRMGKQIDDLLALTRV--GRAVMKRSTFNISQLAAEV 660

Query: 672 ISLVQ--LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
           + ++Q    AN    +++   A        D   V+ +  N+L N++ ++       I  
Sbjct: 661 VDMLQDGEAANAAEFVVQPGIAA-----YGDSALVRLVLQNLLGNSVKYSSRTPYPRIEF 715

Query: 730 THTS-NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
             T+        VRD GVG     +EK  +PF ++  S     EGTG+GL   + +++ +
Sbjct: 716 GQTAAGGRNAFFVRDNGVGFDMAYVEKLFRPFQRLHGS---EFEGTGIGLATVRRIIERH 772

Query: 789 MGKFYIFSTPAKGTLIEIIF 808
            G  +       G       
Sbjct: 773 GGSIWAEGKEDDGATFYFTL 792


>gi|253563504|ref|ZP_04840961.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|251947280|gb|EES87562.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
          Length = 635

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 109/487 (22%), Positives = 180/487 (36%), Gaps = 20/487 (4%)

Query: 325 TVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
            +    I F+ Y    G   +    +  +   K    I     ++         D  + +
Sbjct: 27  VLAGHQIAFWEYDIPTGECNF-TDEYFHILGLKEAGIIFR--DINDFYRFAHPEDVISYQ 83

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
                  +     +   +  +    E           K N+   +               
Sbjct: 84  TTFARMLESETKISQIVVRCVGRQGETIWLEDNFIAYKKNKENGSDKIIAYTANITSRCE 143

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            + ++     +   I+EA  + I I +    I     A      +PVE +          
Sbjct: 144 KEVQIRQLEERNRKIIEALPEFIFIFDDNFFITDVLMAPDTELLHPVEVLTGADGRSIYS 203

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
                +    + E L     + +E               RI        +     +HDI 
Sbjct: 204 SEVSDLFISSIHECLKSGKLKEIEYPVDV-EAGRHFFQARIAPF---EGNKVLALIHDIG 259

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  +   +L  AK+ AE+    KS FLA +SHEIRTPL AI+GFSE+I            
Sbjct: 260 DRMRRSQELLEAKQRAEEADRMKSVFLANMSHEIRTPLNAIVGFSEIIA----LTEDEKE 315

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             EY   I ++ NL+L ++ND+LD+S+IESGK  +H +   +   V E   + +L   +K
Sbjct: 316 KEEYLGIIQQNSNLLLQLINDILDLSRIESGKSEMHCQLTEMSGLVDEVDKVHRLKM-KK 374

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
            + +     +    I  D   V Q+  N LSNAI  T  G  I           V L V 
Sbjct: 375 GVKLNVIRPSEEIWISTDRNRVTQVLFNFLSNAIKNTIEGS-ITFGLVKEEE-WVKLYVT 432

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG G++  +L      F ++        +GTGLGLP+ K++V+   G+  + S   +G+
Sbjct: 433 DTGCGISKEKLPLIFTRFEKL----NDFVQGTGLGLPICKSIVERLGGRIEVESELGQGS 488

Query: 803 LIEIIFP 809
              +  P
Sbjct: 489 TFILYLP 495


>gi|298492081|ref|YP_003722258.1| integral membrane sensor hybrid histidine kinase ['Nostoc azollae'
           0708]
 gi|298233999|gb|ADI65135.1| integral membrane sensor hybrid histidine kinase ['Nostoc azollae'
           0708]
          Length = 690

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 81/279 (29%), Positives = 138/279 (49%), Gaps = 31/279 (11%)

Query: 556 LTMHDISEWKQEK--NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
           L   +I E K ++   +LS +       +  KS+FL+ +SHEIRTP+  +I  +E++  +
Sbjct: 264 LIKREIIEAKLKETNEQLSISNIELASLTKAKSEFLSNMSHEIRTPMNGVICMAELLSMK 323

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
                 +    +    I  SGN +L I+ND+LD SKIESG + L      L + +     
Sbjct: 324 NL----SEEQQDIVQTIRDSGNALLVIINDILDFSKIESGNLQLEEHRFILRDIIKSVFK 379

Query: 674 LVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIST--- 729
           L+   A  K I +  S   ++P  IL D   ++Q+ LN++SNAI FT  G  + I+    
Sbjct: 380 LLSTQAATKNIHLEYSINPDVPTNILGDATRLRQVLLNLISNAIKFTEHG-HVSIAVLAN 438

Query: 730 THTSNEEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
            H  ++++   + ++DTG+G+ +  L +  +PF Q   S   +  GTGLGL ++K++V+ 
Sbjct: 439 KHQEDQKIELMISIKDTGIGIEHDRLNQLFQPFTQADTSISRKYGGTGLGLAISKSLVNL 498

Query: 788 NMGKFYIFS------TPAK------------GTLIEIIF 808
             GK ++ S       P +            G++    F
Sbjct: 499 MGGKIWVESLGNIGGHPPENWLSNWVNNHLPGSIFHFTF 537


>gi|52842393|ref|YP_096192.1| sensory box histidine kinase/response regulator [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|52629504|gb|AAU28245.1| sensory box histidine kinase/response regulator [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
          Length = 828

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 86/370 (23%), Positives = 167/370 (45%), Gaps = 17/370 (4%)

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRKPFTVFLEQNTPSVMN 510
             + +I+      +  +N+  + +  +  + KL       DI+ K +     + + S   
Sbjct: 152 RYMENIIAQIPVSVYWMNKNHVYMGCSNNMVKLLNLNSRYDIVGKTYEDLYHEKSTSYYK 211

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQ 566
                ++   +  +LE+         K + L      L               DI++ K+
Sbjct: 212 KADKIVMDKGISLSLEEPFYCPDGTTKEIYLS-NKVPLRDLEGKIIGMLGVSVDITDRKK 270

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
            + +LS AK+ AE+ ++ K++F+A +SH++RTPL+ ++G +E++K Q    + +P  ++Y
Sbjct: 271 MELELSKAKEAAEEANNVKTEFIANMSHDLRTPLSGVVGMAELMKEQ----VTDPVQVQY 326

Query: 627 ANYIDRSGNLVLDIVNDLLDI-SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           A +I      +L +++ +LDI S     +  L      ++E ++E + L       K++ 
Sbjct: 327 AEWIFDCSQQLLSLLDGILDIVSLGNVKEDELKITTFDINECIAELVHLEMPSIKLKQLD 386

Query: 686 IRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH----TSNEEVILR 740
           +  +    IPR I  D   + +I LN+L NAI FT SG  I I          +  +   
Sbjct: 387 LIVNIDKKIPRLIKTDRIKLHRIILNLLGNAIKFTDSG-YIAIDVKLLELNNESGLIYFA 445

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           + DTG+G+   +  K    F +I  S   + +G G+GL + ++ V+   G+  + S P  
Sbjct: 446 ISDTGIGIPENQQTKIFDRFHRIIPSSIGKYKGHGVGLHIVQSYVNLLGGEIQVNSEPGV 505

Query: 801 GTLIEIIFPL 810
           GT      P+
Sbjct: 506 GTTFYFELPI 515


>gi|188580706|ref|YP_001924151.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi
           BJ001]
 gi|179344204|gb|ACB79616.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi
           BJ001]
          Length = 977

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 103/789 (13%), Positives = 215/789 (27%), Gaps = 85/789 (10%)

Query: 98  ISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP--IEGT 155
            ++     +G      +G R   V           I D      +   +   W    +  
Sbjct: 75  FNDTYFPLLGPRLSWAMGERFDRVWADGWDQAKPIIDDAFA-GKSRRFEDLPWKLATDRG 133

Query: 156 NLYVPIDLAALPIYSRNREFSGFRGFG-----IVHVNRVDNDPRALGKRLDKKFSHLHEI 210
                   +   +       +G   F       V    +  +  A  +R +   S   E 
Sbjct: 134 EAETWWSFSYSRVLDGEGRIAGLFIFTNETTKRVRTETLQRESEAALRRSESLLSATLER 193

Query: 211 KKGHSSVEKEKYDIFSQQSP----PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
                 +      I    +                   ++  +  +  +  +        
Sbjct: 194 LPVGVIIADADGRIVRDNAANREIWGIPPETASWEGYADWVGYWPETGERLRAEEWGMAR 253

Query: 267 SSLPEQEDFHTI-------NLNQYTKKQYFGTLQNNSK----ESFEYLSHRNHPSLSAYF 315
           + L  +     +          +         +++ +          L       +    
Sbjct: 254 ALLHGETVRGELVEIERFDGGGRRLFLNNAAPIRDRAGTIVGGVVAELDVTERIEVERRL 313

Query: 316 DEGENLTPETVDKCPIP----------FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365
            E E L     ++  +           F+          + +F            E    
Sbjct: 314 RESEALARVNAERVQLALSAGAIVGTWFWDLPTDRFT-VDEAFARTFGLDPALGREGLSL 372

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
              +            + +    +        A  + ++        +            
Sbjct: 373 AQVVETVHPDDKAGLAQAINAAIARGGAY---AHQYRVRQADGRYYWIEANGRVDHAPDG 429

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLC------------------SILEATSDGIAI 467
             +   G+  +  + R    + +  ++ L                    I +A+SD +A+
Sbjct: 430 TPLSFPGVLIDVEERRAVAEERDRAIVLLRRLNETLEEQVAARTAERDQIWQASSDLLAV 489

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
            + +G  +S N A S   G+   ++   PF  F+             ++   ++R  L  
Sbjct: 490 ADLDGRFVSLNPAWSATLGWSEAELKAAPFLDFVHPEDRERTLAAAADLARGEMR--LGF 547

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES--SHK 585
                T++                     ++ D++  +++   L+ A++   +       
Sbjct: 548 ENRYRTRDGGYRWFSWNTVP--RDGLIYASVRDVTAIREQARALAEAEEALRQSQKMEAV 605

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
                 ++H+    L  I G  E +   R           Y      +      + + LL
Sbjct: 606 GQLTGGLAHDFNNLLAGISGSLE-LMQTRIAQGRLKDVDRYMGAAQGAAKRAASLTHRLL 664

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
             S+    +  L   P  ++  V     L++       + I    A  +   L D   ++
Sbjct: 665 AFSR----RQTLDPRPTDVNRLVMGMEDLIR-RTVGPTVTIEVVGAAGLWPSLVDPPQLE 719

Query: 706 QIALNILSNAIHFTPSGGQIIISTT-------------HTSNEEVILRVRDTGVGMTNYE 752
              LN+  NA    P GG+I I T                  + + L V DTG GM+   
Sbjct: 720 NALLNLCINARDAMPEGGRITIETANKWLDAHAARQHEVPPGQYLSLCVTDTGTGMSPDV 779

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
             KA  PF     +    G+GTGLGL +         G+  I+S   +GT + I  P Y 
Sbjct: 780 RAKAFDPFFTTKPT----GQGTGLGLSMIYGFAKQTGGQVRIYSELGQGTTVCIYLPRYH 835

Query: 813 -TSHPHDCI 820
             +H  D +
Sbjct: 836 GEAHEPDSL 844



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/414 (7%), Positives = 81/414 (19%), Gaps = 56/414 (13%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI-------GDLLKRQNT 142
           DA G +   +    +  G            D       +    +          L    T
Sbjct: 202 DADGRIVRDNAANREIWGIPPETASWEGYAD-WVGYWPETGERLRAEEWGMARALLHGET 260

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
             G+                  A PI  R     G  G           +     +  + 
Sbjct: 261 VRGELVEIERFDGGGRRLFLNNAAPIRDRAGTIVG--GVVAELDVTERIEVERRLRESEA 318

Query: 203 KFSHLHE----IKKGHSSVEKEKYDIFSQQSP------------PPHLRMKNKVSSLTEY 246
                 E         + V    +D+ + +              P   R    ++ + E 
Sbjct: 319 LARVNAERVQLALSAGAIVGTWFWDLPTDRFTVDEAFARTFGLDPALGREGLSLAQVVET 378

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
               D     +      +   +   Q      +   Y  +               +    
Sbjct: 379 VHPDDKAGLAQAINAAIARGGAYAHQYRVRQADGRYYWIEANGRVDHAPDGTPLSFPGVL 438

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPF-----------------------FVYSHGNLFY 343
                     E  +     + +                                 G    
Sbjct: 439 IDVEERRAVAEERDRAIVLLRRLNETLEEQVAARTAERDQIWQASSDLLAVADLDGRFVS 498

Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403
            NP++     +   + ++ A  L      P+  +        L R +          +  
Sbjct: 499 LNPAWSATLGWSEAE-LKAAPFLD--FVHPEDRERTLAAAADLARGEMRL----GFENRY 551

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
           +         ++    +      ++       E         +   +  ++ ++
Sbjct: 552 RTRDGGYRWFSWNTVPRDGLIYASVRDVTAIREQARALAEAEEALRQSQKMEAV 605


>gi|91776115|ref|YP_545871.1| periplasmic sensor hybrid histidine kinase [Methylobacillus
           flagellatus KT]
 gi|91710102|gb|ABE50030.1| periplasmic sensor hybrid histidine kinase [Methylobacillus
           flagellatus KT]
          Length = 1146

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 76/262 (29%), Positives = 135/262 (51%), Gaps = 6/262 (2%)

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            +I   KQ   +L  A+++AE+ +  KS ++  +SHE+RTPL +I+G+++++      P 
Sbjct: 667 REIVLHKQTDAELQRARQVAEQANQAKSRYITGISHELRTPLNSILGYAQLL---DNDPS 723

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
                 +    I RSG  +L ++   LDI++IESGK+      V   E + + +S+ +L 
Sbjct: 724 IPENRRQSIRVIRRSGEHLLSLIEGTLDIARIESGKLTFDLRLVRFPEFIQQLVSMFELQ 783

Query: 679 ANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737
           A  K I  +      +P++   D + + QI +NIL NA+ FT  GG +     + + E +
Sbjct: 784 ARNKGIDFKYELRGELPKVVRIDQKRLSQILINILGNAVKFTRHGG-VSFKLRY-AREML 841

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
            + + DTG G+   E+EK  +PF +   + +    GTGLGL ++K + +   G+  + ST
Sbjct: 842 HISIEDTGPGIAPEEIEKVFEPFARGSAAAKSNIGGTGLGLTISKMLTELMGGQLTVRST 901

Query: 798 PAKGTLIEIIFPLYDTSHPHDC 819
             +G+   I   L     P + 
Sbjct: 902 LGQGSQFNIRLFLSQVRVPEEI 923


>gi|296388021|ref|ZP_06877496.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           PAb1]
          Length = 918

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 77/257 (29%), Positives = 134/257 (52%), Gaps = 8/257 (3%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I+  K+E  +   A + A  E+  KS FLA++SHEIRTPL  ++G  +++++        
Sbjct: 384 INALKEEGFRSRQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPLDRG-- 441

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
                Y   I  SG+ ++ ++ND+LD ++IESGK++L      L+E +S+ ++L    A 
Sbjct: 442 --QAAYVETIASSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAV 499

Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVI 738
           EKR+ +       +PR +  D   ++Q+ +N+LSNA+ FT  G   + +      +    
Sbjct: 500 EKRLRLHLGLDRGVPRRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVRVQRRFDESGRER 559

Query: 739 L--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           L   V D+G+G++    +   + F Q  +S   R  G+GLGL +++ +V    G+  + S
Sbjct: 560 LLYSVSDSGIGISAQAQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSS 619

Query: 797 TPAKGTLIEIIFPLYDT 813
            P KGT   +  PL   
Sbjct: 620 EPGKGTRFSVDLPLSPA 636


>gi|294636745|ref|ZP_06715085.1| signal transduction histidine-protein kinase AtoS [Edwardsiella
           tarda ATCC 23685]
 gi|291090046|gb|EFE22607.1| signal transduction histidine-protein kinase AtoS [Edwardsiella
           tarda ATCC 23685]
          Length = 593

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 104/581 (17%), Positives = 220/581 (37%), Gaps = 45/581 (7%)

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
             ++   + +L E+ D           +     L   ++   +          S   D  
Sbjct: 37  AAIVQLLDQALGERLDHFAALPRAERIRALNAELSPITERITQAFPGIGAGYYSKTLDAI 96

Query: 319 ENLTPETVDKCPIPFFV--YSHGN--------LFYANPSFL-----LLTKYKSVDDIEIA 363
               P  + +  +   +     G         L ++           +   +   ++   
Sbjct: 97  ITYAPFALYQSNVGVTIAADHPGREVMRSDTPLVFSGRQVRGDILNSMRPIRRGGEVTGY 156

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
              + L              +M   +     +    +   +    N   +T       ++
Sbjct: 157 IWANELTQDIHRQARQMDLRIMAVLAAGLLCSLLLIVLFSRRFSANIDIITEGLSTLTHK 216

Query: 424 FPENMPQNGIEPEDVDTRINK--RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
               +P+   E   +   +N   + +         I+E  +DG+  I+R G + + N A 
Sbjct: 217 TSAPLPELPGELGQISRSVNALAQTLRETKTLNDLIIENAADGVIAIDRLGAVTTINPAA 276

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
             + GY +++++ +P+      +        + + L+      L +      +  + + L
Sbjct: 277 EAITGYTLDELVGQPYAALFSDSH---FASPVLDTLAHGTAH-LAQEVSFPAR-HRTIEL 331

Query: 542 RIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
            +   ++           +   D++  K+ + +L+  +++A        + +A V+HE+R
Sbjct: 332 SVTTSRIHNPHGELMGALVIFSDLTARKEAQRRLAQTERLAT-----LGELMAGVAHEVR 386

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
            PLTAI G+ ++I  Q   P     + EY + + +  + +  ++  LLD S+    +   
Sbjct: 387 NPLTAIRGYVQIICQQTTLPA----HQEYLSVVLKEIDSINKVIQQLLDFSRPRQSQ--- 439

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
            ++ VSL+  + EA+ LVQ    + RI         +P I+AD   +KQ+ LNIL NA+ 
Sbjct: 440 -WQRVSLNALIEEALILVQTSGVQARITFHCELDRTLPAIVADRELIKQVLLNILINAVQ 498

Query: 718 FTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
              + G+I I T   +  +  + + D+G G+     +K   PF     S      GTGLG
Sbjct: 499 AISARGEIRIRTQQRTPTQQTVTIEDSGCGIDIALQKKIFDPFFTTKAS------GTGLG 552

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
           L L++ +++A+ G   + STP  G+   +  PL     P +
Sbjct: 553 LALSQRIINAHSGDIDVVSTPGSGSTFTLTLPLNPPESPAE 593



 Score = 42.3 bits (98), Expect = 0.31,   Method: Composition-based stats.
 Identities = 20/236 (8%), Positives = 59/236 (25%), Gaps = 18/236 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G +  I+       G    +++G     +    H    + + D L        +  
Sbjct: 263 IDRLGAVTTINPAAEAITGYTLDELVGQPYAALFSDSHF--ASPVLDTLAHGTAHLAQEV 320

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
            +P     + + +  +   I++ + E  G     I        + +    + ++  +   
Sbjct: 321 SFPARHRTIELSVTTS--RIHNPHGELMGA--LVIFSDLTARKEAQRRLAQTERLATL-- 374

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
                    E         ++P   +R   ++           + L      + +  +  
Sbjct: 375 --------GELMAGVAHEVRNPLTAIRGYVQIICQQTTLPAHQEYLSVVLKEIDSINKVI 426

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
               +           ++     L   +    +    +   +     D        
Sbjct: 427 QQLLDFSR--PRQSQWQRVSLNALIEEALILVQTSGVQARITFHCELDRTLPAIVA 480


>gi|256419624|ref|YP_003120277.1| histidine kinase [Chitinophaga pinensis DSM 2588]
 gi|256034532|gb|ACU58076.1| histidine kinase [Chitinophaga pinensis DSM 2588]
          Length = 732

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 76/281 (27%), Positives = 141/281 (50%), Gaps = 8/281 (2%)

Query: 533 TKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
            +      + I +  +  +      M  I   +Q   +L  ++K   + +  K +F+  +
Sbjct: 180 RRARNWGIILICLILMTAAGMLWFVMSRIRRQQQLILELDRSEKKIREIAMIKENFMTNM 239

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHEIRTPL AI+GF+ ++K+++     +    E+   I ++G  +L I+ND+LD+SKIE+
Sbjct: 240 SHEIRTPLNAILGFTNLLKSRKL----DDSSTEFVGSIQKAGENLLTIINDILDLSKIEA 295

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNI 711
           G + +   P S+   +    +L      EK+++++   A+++P  ++ D   + Q+ +N+
Sbjct: 296 GMVRIESNPFSVRGLLHSIQTLFSEKVKEKKLVLQGEIASDVPDTLIGDATRLTQVLVNL 355

Query: 712 LSNAIHFTPSGGQII-ISTTHTSNE--EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
           + NA+ FT  GG +I +S   +     ++   + DTG+G+   +L      F Q  +S  
Sbjct: 356 IGNALKFTEKGGIVISVSNRQSDGNIIQLAFAITDTGIGIEPDKLGSIFDRFNQAEDSIT 415

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            +  GTGLGL + K +V    G   + S P KGT      P
Sbjct: 416 RKYGGTGLGLSIVKDLVILQGGDISVESEPGKGTTFRFFIP 456


>gi|92117446|ref|YP_577175.1| PAS/PAC sensor signal transduction histidine kinase [Nitrobacter
           hamburgensis X14]
 gi|91800340|gb|ABE62715.1| PAS/PAC sensor signal transduction histidine kinase [Nitrobacter
           hamburgensis X14]
          Length = 494

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 89/510 (17%), Positives = 184/510 (36%), Gaps = 31/510 (6%)

Query: 322 TPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
               +DK  +  +         + +     L        +     LS LL          
Sbjct: 1   MQRGIDKSGVGIWDLDLSTRKLFWSSPTHRLFGVPENAPVSYDLFLSLLLPED---RART 57

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
              +              R+         S  +        N        +G+  +  D 
Sbjct: 58  ESAIQRSIKTGCRFDIQYRIRGTP---AGSRWVRARGGLVINDDGVPRRLSGVVLDIDDQ 114

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           ++ +  +      L SIL+   D + +I+  GII   + A  +LFGY   + + +  ++ 
Sbjct: 115 KLIEEALLAREDHLRSILDTIPDAMIVIDDHGIIQHFSTAAERLFGYSEHEAIGQNVSIL 174

Query: 501 LEQNTPSVMNHYLTEILSLDLRQT--LEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSL 556
           + +   S  + YL    S   R    + +I  G  ++     + + + ++       ++ 
Sbjct: 175 MPEPDSSRHDGYLARYQSTGERHIIGIGRIVTGKRRDGATFPMHLSVGEMHSGGKRHFTG 234

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESS--HKSDFLARVSHEIRTPLTAIIGF---SEVIK 611
            + D++E ++ + KL          S      +  + ++HE+  PLTAI  +   S  + 
Sbjct: 235 FVRDLTEHQRTQAKLQELHSELVHISRLSAMGEMASALAHELNQPLTAISNYMKGSRRLL 294

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI-SKIESGKMNLHFEPVSLDEAVSE 670
                P    +     +           I+  L D  S+ ES          SL + + E
Sbjct: 295 AASTDP-NIAKIETALDRAADQAIRAGQIIRRLRDFVSRRES-----EKRVESLAKLIEE 348

Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT--PSGGQIIIS 728
           A++L    A E+ +++R        R+L D   ++Q+ +N+  NA+         +I  S
Sbjct: 349 AVALGLAGAREQNVMLRLDLDAECDRVLVDRVQIQQVLINLFRNALEAMVESPKREIAAS 408

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
           +T  S++ V L + DTG G +        + F     +      G G+GL +++++++A+
Sbjct: 409 STKASDDTVELSISDTGHGFSEATTANLFETFFTTKET------GMGVGLSISRSIIEAH 462

Query: 789 MGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
            G+ +     + G    +  P+  T    D
Sbjct: 463 GGRMWAEPNDSGGATFRLTLPIAPTEDLPD 492



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/301 (10%), Positives = 77/301 (25%), Gaps = 19/301 (6%)

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
              +D                    Q             +   G + N+           
Sbjct: 49  LLPEDRARTESAIQRSIKTGCRFDIQYRIRGTPAGSRWVRARGGLVINDDGVPRRLSGVV 108

Query: 307 NHPSLSAYFDE----GENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIE 361
                    +E     E+     +D  P     +  HG + + + +   L  Y   + I 
Sbjct: 109 LDIDDQKLIEEALLAREDHLRSILDTIPDAMIVIDDHGIIQHFSTAAERLFGYSEHEAIG 168

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
               +  L+  P  S ++          +R  I     +   + +               
Sbjct: 169 QNVSI--LMPEPDSSRHDGYLARYQSTGERHIIGIGRIVTGKRRDGATFPM---HLSVGE 223

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI--LEATSDGIAIINREGIILSTNR 479
                     G   +  + +  + K++    +L  I  L A  +  + +  E      N+
Sbjct: 224 MHSGGKRHFTGFVRDLTEHQRTQAKLQELHSELVHISRLSAMGEMASALAHEL-----NQ 278

Query: 480 AVSKLFGYP--VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
            ++ +  Y      +L       + +   ++       I +  + + L         E++
Sbjct: 279 PLTAISNYMKGSRRLLAASTDPNIAKIETALDRAADQAIRAGQIIRRLRDFVSRRESEKR 338

Query: 538 L 538
           +
Sbjct: 339 V 339



 Score = 40.8 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 27/247 (10%), Positives = 66/247 (26%), Gaps = 10/247 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID HG ++  S    +  G    + IG  +  +        ++      +     +    
Sbjct: 142 IDDHGIIQHFSTAAERLFGYSEHEAIGQNVSILMPEPDSSRHDGYLARYQSTGERHIIGI 201

Query: 149 LWPIEG---TNLYVPIDLA-ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
              + G        P+ L+         R F+GF     V         +A  + L  + 
Sbjct: 202 GRIVTGKRRDGATFPMHLSVGEMHSGGKRHFTGF-----VRDLTEHQRTQAKLQELHSEL 256

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
            H+  +           +++    +   +    ++   L          ++T        
Sbjct: 257 VHISRLSAMGEMASALAHELNQPLTAISNYMKGSRRL-LAASTDPNIAKIETALDRAADQ 315

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
              +             + ++K+     +   +     L+     ++    D        
Sbjct: 316 AIRAGQIIRRLRDFVSRRESEKRVESLAKLIEEAVALGLAGAREQNVMLRLDLDAECDRV 375

Query: 325 TVDKCPI 331
            VD+  I
Sbjct: 376 LVDRVQI 382


>gi|52079997|ref|YP_078788.1| two-component sensor histidine kinase [Bacillus licheniformis ATCC
           14580]
 gi|52785372|ref|YP_091201.1| KinA [Bacillus licheniformis ATCC 14580]
 gi|319646226|ref|ZP_08000456.1| sensor protein [Bacillus sp. BT1B_CT2]
 gi|52003208|gb|AAU23150.1| two-component sensor histidine kinase [Bacillus licheniformis ATCC
           14580]
 gi|52347874|gb|AAU40508.1| KinA [Bacillus licheniformis ATCC 14580]
 gi|317391976|gb|EFV72773.1| sensor protein [Bacillus sp. BT1B_CT2]
          Length = 603

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 96/514 (18%), Positives = 193/514 (37%), Gaps = 50/514 (9%)

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
                 A     +      ++  P P  +   G + Y N + + L   +    I      
Sbjct: 128 EDAPEEASRLPAKEEFEAMIEGLPNPLCISVQGEIVYVNDAMVNLLGAEHKRQIIGKYSY 187

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
                  +  D    +     +  +  +       T        + +         Q   
Sbjct: 188 D--FIEKEYHDIVKNRI----KRMQQGLDVGMIEQTWHKLDGTQIHLEVKAAPTIYQ--N 239

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
              +  +  +    +  +  ++    +   +++ + D IA+I  +G  +  N +  +LF 
Sbjct: 240 QKAELLLLIDISSRKKFQTILQKSRERYQLLIQNSIDTIAVI-HKGRWVFMNESGIRLFE 298

Query: 487 Y-PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
               ED++ K     L       +   L  I        + K T   T E++L+   ++ 
Sbjct: 299 AKTYEDLIGKDIYEHLHPCDHEDVKARLKRITDRQSESEIIKQTWY-TFEKRLIYTEMVC 357

Query: 546 KKLP--FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
                   +   + + DISE KQ +  +  ++K++           A ++HEIR PLTAI
Sbjct: 358 IPTTFFGETAVQVILRDISERKQTEELMVRSEKLSIA-----GQLAAGIAHEIRNPLTAI 412

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
            GF +++K              Y N I    + +  I+++LL ++K +   +    E + 
Sbjct: 413 KGFLQLMK------PTMEENEHYFNIIFSELSRIELILSELLMLAKPQQNALK---EKLD 463

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
           L   + E  +L++  AN   ILI T   ++   I  D   +KQ+ +N++ NA+   P+GG
Sbjct: 464 LIRLIREVTALLETQANLNGILINTILTDDKIYIKGDQNQLKQVFINLIKNAVESMPNGG 523

Query: 724 QIIISTTHT--------SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
            + ++   T         +E            +  + L++  +PF         + +GTG
Sbjct: 524 TVHLTVRETDDSVVVEVEDEGEG---------IPEHVLKRIGEPFLTT------KEKGTG 568

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           LGL +   +++ + G   + S   KGT  +I+FP
Sbjct: 569 LGLMVTFNIIENHNGTIEVDSKAEKGTTFKILFP 602



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 47/401 (11%), Positives = 109/401 (27%), Gaps = 42/401 (10%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           + A+G    IS    + +     ++IG  L D      +            ++ +Y +  
Sbjct: 21  LSANGRFIYISANCKELLSYEQNELIGTYLKDYLHEDDL---------FLVESYFYNEHH 71

Query: 149 LWP-----IEGTNLYVPIDLA----ALPIYSRNREFSGFRGFGIVHVN-------RVDND 192
           L P     ++     + I+ +       +  + RE            +         D  
Sbjct: 72  LLPCTFRFVKKDYTMIWIEASIDFVTTHVGEKEREIVLKMKVFEDRPSKKSSSIKEEDAP 131

Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD 252
             A      ++F  + E           + +I        +L        +   Y++   
Sbjct: 132 EEASRLPAKEEFEAMIEGLPNPL-CISVQGEIVYVNDAMVNLLGAEHKRQIIGKYSYDFI 190

Query: 253 VLKTEKYPLLTSEESSLPE-----QEDFHTINLNQYTKKQYFGTL--QNNSKESFEYLSH 305
             +         +           ++ +H ++  Q   +        QN   E    +  
Sbjct: 191 EKEYHDIVKNRIKRMQQGLDVGMIEQTWHKLDGTQIHLEVKAAPTIYQNQKAELLLLIDI 250

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365
            +         +        +        V   G   + N S + L + K+ +D+     
Sbjct: 251 SSRKKFQTILQKSRERYQLLIQNSIDTIAVIHKGRWVFMNESGIRLFEAKTYEDLIGKDI 310

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
              L           +K +   +S+   I  +      +        M  IP     +  
Sbjct: 311 YEHLHPCDHEDVKARLKRITDRQSESEIIKQTWYTFEKRL---IYTEMVCIPTTFFGETA 367

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
                  I  +  + +  + ++ +   +L SI    + GIA
Sbjct: 368 ----VQVILRDISERKQTE-ELMVRSEKL-SIAGQLAAGIA 402


>gi|2463029|emb|CAA74020.1| sensory kinase [Pectobacterium carotovorum subsp. carotovorum]
          Length = 928

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 93/343 (27%), Positives = 154/343 (44%), Gaps = 19/343 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +F Y +   +  P    +       ++      L   +   +             +++ +
Sbjct: 190 IFAYRLMRDVTTPIRNMV-----DTVDRIRRGQLDSRVEGYMLGELDMLKNGINSMAMSL 244

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                          +D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 245 TAYHEEMQQNIDQATYDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTP 304

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+     Q      N    +Y   I+RS N +L+I+ND+LD SK+E+GK+ L  
Sbjct: 305 LNGVIGFT----RQTLKTSLNTTQTDYLLTIERSANNLLNIINDVLDFSKLEAGKLVLED 360

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P SL   + + + L+   A+EK + +  S  N++P   + D   ++QI  N+L NAI F
Sbjct: 361 IPFSLHSTLDDVVMLLAHTAHEKGLELTLSIQNDVPEQYVGDPLRIQQIITNLLGNAIKF 420

Query: 719 TPSGGQ-IIISTTHTSNEEVILRVR--DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T  G   I +      + +V L V+  DTG+G+   +  +  + F Q   S   R  GTG
Sbjct: 421 TEQGNIDIRVEKRRQEHHQVQLEVQICDTGIGIAELQQSQLFQAFRQADTSISRRHGGTG 480

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTL--IEIIFPLYDTSHP 816
           LGL + + +V    G     S   KG+     I  PL   + P
Sbjct: 481 LGLVITQRLVKEMGGDISFQSQLNKGSTFWFHITLPLNPHTVP 523


>gi|47564964|ref|ZP_00236008.1| sensor histidine kinase/response regulator [Bacillus cereus G9241]
 gi|47558337|gb|EAL16661.1| sensor histidine kinase/response regulator [Bacillus cereus G9241]
          Length = 896

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 78/338 (23%), Positives = 148/338 (43%), Gaps = 18/338 (5%)

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            +D++++            +    +  +L      T E        + +   L++  ++L
Sbjct: 395 HQDLIQQTVDNLGLTIHSIMGRMRIQTLLHESQAMTEELQVQSEELQTQAEELQMQAEEL 454

Query: 549 PFSSCYSLTMHDISEWKQEKN-----KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
             ++    +  + +E K         +L        + S +KS+FLA +SHE+RTPL +I
Sbjct: 455 RTTNEQLESRTEEAEQKTADLQVTKLELEEKASELLRSSKYKSEFLANMSHELRTPLNSI 514

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +  SE++K      L +    E A  I  SG  +L ++ND+LD+SK+E+GK+++ FE  +
Sbjct: 515 LLLSEMLKENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIFEATN 573

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSG 722
           + +  +         A +K +      ++ IP +   D + ++QI  N+LSNA  FT  G
Sbjct: 574 ISDMAASMHQNFLHIAAQKNVDFTVKDSDTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKG 633

Query: 723 GQ------IIISTTHTS-----NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
                   +  S           + + + V+DTG+G+   + +   + F Q   +   + 
Sbjct: 634 SVSLHFDSVETSNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGATIRKY 693

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            GTGLGL + K       G   + S   +G+   +  P
Sbjct: 694 GGTGLGLSICKEFARLLGGWITLESNVGEGSTFTVYIP 731


>gi|116494442|ref|YP_806176.1| Signal transduction histidine kinase [Lactobacillus casei ATCC 334]
 gi|116104592|gb|ABJ69734.1| Signal transduction histidine kinase [Lactobacillus casei ATCC 334]
          Length = 555

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 74/404 (18%), Positives = 165/404 (40%), Gaps = 34/404 (8%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEI----EVMQLCSILEATSDGIAIINREGI 473
                    + P   +          +  +             +++    G+ +I+ +  
Sbjct: 178 DPDPVILAPDSPFVPVARRINALAAEQAHLREKVAVRQSSFDRLIDNLPLGVMLIDTDKD 237

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
           ++  N A+S+L G+     + +P   +L+      +   +      +     E   L + 
Sbjct: 238 VILHNHAMSQLLGHQ----IPQPRHSYLDDVKTYALARMIEHTFRHEKTHHQELTILTTQ 293

Query: 534 K--EEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
           K  +  ++ L   I +L       + ++D++  +Q +                + DF+  
Sbjct: 294 KSVDASVIPLNQGISRLQ----VLVILYDVTYLRQVE--------------KMQLDFVGN 335

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           VSHE++TP+TAI GF+E +               +   I      +  ++ND+L +S+ +
Sbjct: 336 VSHELKTPVTAISGFAETLLGG--AKNDPATLDRFLGIIYDESKRLTQLINDILTLSRPD 393

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
           S +       V+L + V +A+  +     +K++ +  +   ++  ++ D R + QI  N+
Sbjct: 394 SNQNVA--ASVALKKLVDDALHNLAKVIQDKQVRVEVAITPDLL-VVTDERKLTQIVRNL 450

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           L+NA+ +    G + IS     + ++ L V DTG+G++  E  +  + F ++  ++    
Sbjct: 451 LNNAVFYNRLAGHVTISAQVVDH-QLSLAVADTGIGISETEQARIFERFYRVDKARSRHN 509

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            GTGLGL +   +V +  G   + S    G+   +  P+ +  H
Sbjct: 510 GGTGLGLAIVAELVKSMDGHVAVHSQVGVGSTFTVTLPVGEGPH 553


>gi|120553437|ref|YP_957788.1| histidine kinase [Marinobacter aquaeolei VT8]
 gi|120323286|gb|ABM17601.1| amino acid-binding domain sensor histidine kinase [Marinobacter
           aquaeolei VT8]
          Length = 922

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 108/687 (15%), Positives = 220/687 (32%), Gaps = 64/687 (9%)

Query: 168 IYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ 227
           +     +F             V +   A+ + +  +           S   +        
Sbjct: 155 VGDDPNQFPLLDPVESFTPVPVSSLGEAVSRVMSGEADAFLGPVPVVSDYLESAMINGVG 214

Query: 228 QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES-SLPEQEDFHTINLNQYTKK 286
            +     R  + V  +         V       L   E               +      
Sbjct: 215 LAVLLDRRPVDVVLQVPIEQERMFRVFDRTVSSLTHQEHRNIRQSWLAGELPEVETRNVA 274

Query: 287 QYFGTLQNNSKESFEYLSHRNH-PSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYAN 345
              G L+  +  S   +  R   P      D         +              +   +
Sbjct: 275 LTAGELEWLASNSEITVGLRPDWPPFEFEQDGRPTGLVADLLSRLEKDLGIRFQRVTVDS 334

Query: 346 PS-FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
            +      K   +D +               +      P+ L   D        R    +
Sbjct: 335 RAGAEEKLKSGELDVLPGMSRTPRTEQEFLFTRAYVNVPIALAIRDTGRFIGDLR----E 390

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
              E    +                    +    D       + +    L  ++      
Sbjct: 391 LRDERVGVVNRQASHDYLLINHPNLDLYPQQTVED-----GLLALSNGDLDVMVTHIPAV 445

Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
              + R G    +N    ++          +      +     ++N  L  + + +    
Sbjct: 446 SYTVARLG---LSN---LRITSITPYQYDLRLAVSPAQPELHRILNKALGSLPTSETEAI 499

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH----------DISEWKQEKNKLSHA 574
             +      ++E   ++   I  +       + +           ++ E  + +N L  +
Sbjct: 500 YNRWIHLDIEQEADYTVVRRIILI----AIVVVLIFLYWNRKLSLEVDERIRSENALRRS 555

Query: 575 KKIAEKESSH--------------KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           +                       KS+FLA +SHEIRTP+ A+IG+S+++    +  + +
Sbjct: 556 EDELRAAKLEAERLAREAEAASRAKSEFLANMSHEIRTPMNAVIGYSDLL----YNSVTD 611

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
           P+   Y N I      +L ++ND+LD+S+IE+GKM L F PVS+   +S+   +  L A 
Sbjct: 612 PQQRNYLNAIRAGSRSLLMLINDILDLSRIEAGKMRLDFGPVSVRRLLSDVRHIFDLRAT 671

Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE--- 736
           E+ I +  S  + +P  ++ D   ++Q+  N++ NAI FT  GG + +        E   
Sbjct: 672 EQGITLEVSVGSGMPSAMMLDETRLRQVLFNLVGNAIKFTHEGG-VTVRAVAKPLGEPAD 730

Query: 737 ---------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
                    +++ V DTG+G+   + E+  + F Q       R  GTGLGL +++ +V+ 
Sbjct: 731 ADSEVCYYRLVVTVADTGIGIAPDQQERIFEAFEQQEGQSSRRYGGTGLGLAISRKLVEM 790

Query: 788 NMGKFYIFSTPAKGTLIEIIFPLYDTS 814
             G+  + S    G+  +++ P  + +
Sbjct: 791 MGGRLTVKSEANVGSTFKVVLPRVEAT 817


>gi|332668377|ref|YP_004451165.1| multi-sensor signal transduction histidine kinase
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332337191|gb|AEE54292.1| multi-sensor signal transduction histidine kinase
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 557

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 71/365 (19%), Positives = 160/365 (43%), Gaps = 27/365 (7%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            ++  E  +  +++ +  D    +++ G +L  N+   +L G    + + +  +   ++N
Sbjct: 216 AQLMFEKKRAEAVINSLDDASIGVDKHGTVLFANQKALQLLGLEAAETIGQATSTLAQRN 275

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564
                      + +       + +            L     ++         + +I+  
Sbjct: 276 DLLKFM-----LENPSGTSPFKIVMDNRE---NYFLLDSYKIQVDEEPGIVFVLKNIT-- 325

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
                          ++   K++FLA +SHE++TP++ I    ++++N + G L +   +
Sbjct: 326 ------------TFLEKDVAKTNFLATISHELKTPISGIKLGLQLLENPKTGALNSD-QL 372

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           +    I    + +L I ++LL+++++E+GK+++  E +   E V  A+  +     EK++
Sbjct: 373 QLLQDIKYDSDRLLRITSELLNMTQLETGKIDIKLEAIDPSELVGTALQALFPQTQEKKL 432

Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744
            + T FA N+P++  D      + +N+LSNAI       ++ +S   +  ++V+  ++D 
Sbjct: 433 QLSTQFAPNLPKVWCDPEKTIWVLINLLSNAIRHASESDRLTVSIE-SQGQQVLFSIQDQ 491

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G G+     EK  + + + P S+     GTGLGL +++  V+A  GK  + S    G   
Sbjct: 492 GPGIAPEFQEKIFEKYVKAPGSKST---GTGLGLAISRDFVEAMGGKIGVNSQLGHGATF 548

Query: 805 EIIFP 809
               P
Sbjct: 549 FFDLP 553


>gi|153868900|ref|ZP_01998629.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
 gi|152074529|gb|EDN71374.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
          Length = 934

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 110/414 (26%), Positives = 177/414 (42%), Gaps = 61/414 (14%)

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIE-----VMQLCSILEATSDGIAII--------- 468
             P+     G      D      +++IE       ++ + L   +  I II         
Sbjct: 314 GIPDWQWMIGTGVYIDDIEKEISQLQIELNQNLKREIRNTL-FITSAILIIFILFLNLFY 372

Query: 469 -----NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
                +    I   N+A         ++I RK           +  N  L +      + 
Sbjct: 373 RYLRNDFSLFISFFNQAA-----NLDQEINRKALWFHELAEMANYANQMLRDKRKAQRKL 427

Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
              +  L S   ++   L                       K++  +L  AK+IAE  + 
Sbjct: 428 QQHRDHLESEVAKRTYWL-----------------------KEKTTQLEQAKEIAEAANQ 464

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
            KS FLA +SHE+RTPL AI+GF++++   +     +  + E  N I+RSG  +L ++ND
Sbjct: 465 AKSLFLANMSHELRTPLNAILGFAQIMHRSQ---TLSQEHQENVNVINRSGEYLLSLIND 521

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLR 702
           +LD+SKIE+GK+ L    + L   + E   L  L A  K++ +     NN+PR +  D +
Sbjct: 522 VLDMSKIEAGKITLDETNIDLYRLLDEVHDLFYLRAESKQLQLDIERDNNVPRYLYTDGK 581

Query: 703 SVKQIALNILSNAIHFTPSGGQ------IIISTTHTSNEEVILR--VRDTGVGMTNYELE 754
            ++Q+ +N+LSNA+ FT  GG       I    +  +  EVIL   VRDTG G+   E++
Sbjct: 582 KLRQVLINLLSNALKFTQEGGIHLYINDITPPLSKETMTEVILEFQVRDTGPGIAENEMD 641

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           K  + F Q       + EGTGLGLP+++  V    G   + S   +GT      
Sbjct: 642 KLFEAFTQTATGIASQ-EGTGLGLPISRKFVQLMGGDISVQSKVGEGTTFTFSI 694


>gi|161486828|ref|NP_719006.2| hybrid sensory histidine kinase BarA [Shewanella oneidensis MR-1]
          Length = 935

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 90/245 (36%), Positives = 134/245 (54%), Gaps = 8/245 (3%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  AKK A + S  KS+FLA +SHE+RTPL  +IGF+  +         +   ++Y N 
Sbjct: 286 ELDLAKKRALEASRIKSEFLANMSHELRTPLNGVIGFARQLVKTPL----HSSQVDYINT 341

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I+RS   +L I+ND+LD SK+E+GKM L   P  L E + E I+L+   A  K + +   
Sbjct: 342 IERSATNLLAIINDILDFSKLEAGKMVLESMPFGLRETLGETITLISGSAQAKGLELVVD 401

Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVILR--VRDTG 745
            A N+P  +  D   V QI  N++ NAI FT SG   + +     ++E+V+LR  V DTG
Sbjct: 402 IAPNVPDNVNGDSMRVCQIINNLVGNAIKFTDSGSVLVKLELQAQTDEQVVLRCDVIDTG 461

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+   + +   + FGQ  +S   R  GTGLGL + K +V+   G+    S+  KG+   
Sbjct: 462 IGIDESQQDFLFQAFGQADSSISRRFGGTGLGLVITKRLVNQMGGQIGFTSSVDKGSNFW 521

Query: 806 IIFPL 810
              PL
Sbjct: 522 FTLPL 526


>gi|308535234|ref|YP_002138198.2| CHASE/PAS domain-containing sensor histidine kinase response
           regulator [Geobacter bemidjiensis Bem]
 gi|308052579|gb|ACH38402.2| sensor histidine kinase response regulator, CHASE and PAS
           domain-containing protein [Geobacter bemidjiensis Bem]
          Length = 848

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 101/656 (15%), Positives = 202/656 (30%), Gaps = 68/656 (10%)

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE--- 265
           E   G  ++E+    +          R  N+   L         +   +  PL  +    
Sbjct: 76  ESYLGMLALEQAAGKLDRPLFQQRASRYINEHPELINITWVDAGMFIRDVAPLAQNRQIL 135

Query: 266 --ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
                LPE +    +  +                 SFE                G     
Sbjct: 136 GLHVDLPEPKRASRLARDLRLPVYTSPFQAIQGVTSFEVWVPVYRDDTFLGLFAGVYSCE 195

Query: 324 ETVDKCPIPF--------FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
           + +++              V  + ++  + P    L K  S + +        +L   + 
Sbjct: 196 KLLEQLVSQVRPRLYHLSLVDRYDSVLASYPVQGTLDKNLSKEVLITPEDSGVVLRIERY 255

Query: 376 SDNNAIKPVMLYRSDRTCIAASARL-----HTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
              +  + ++L       +             +   R    A+         +  E    
Sbjct: 256 ETGSEWRLMILKFLSLALVPGLGYTLWNLKREMDERRRVEEALKEQAMTLEQEVRERKAA 315

Query: 431 NGIEPE--------DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
                +          +    +  +     +L  +L++  + I  I+ EG     N+A  
Sbjct: 316 QEHLQDQAVLLEEQIDERWQAEEALRASEERLRLLLDSAGEAIYGIDLEGNCTFCNKACL 375

Query: 483 KLFGY-PVEDILRKPFTVFLEQNTP-----SVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
           ++ G    E  L +     +  + P           + + L  +    +         + 
Sbjct: 376 RMLGADSPEQYLGRNMHEIIHHSYPDGTPMPRKECMVHQTLREEQGCHVNDEVFWR-ADG 434

Query: 537 KLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
               +                 +   DI++ K+ + +   ++K+              V+
Sbjct: 435 SSFPVEYWSHPQVKGGKVVGAVVAFIDITDRKRLEEQYRQSQKM-----ESVGRLAGGVA 489

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           H+    L+ I+G +E +  ++           Y   I  +     +I   LL  S+ E  
Sbjct: 490 HDFNNMLSVILGAAE-LSRRKLEEG--EPIDAYLEVITNAAKRSSEITRQLLAFSRKE-- 544

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713
              +   P+ L++ + E+  ++    +E  I +  +    +  +  D   V QI +N+  
Sbjct: 545 --VVSPRPLDLNQLIRESNKILARLISE-DINLSFTPDPGLWLVSIDPSQVDQILMNLAV 601

Query: 714 NAIHFTPSGGQIIISTT--------------HTSNEEVILRVRDTGVGMTNYELEKAMKP 759
           NA    P+GG++ I T                   + V L V DTG GM    +E   +P
Sbjct: 602 NARDAMPNGGRLSIETRNLRLTGDCSHVHPDAHPGDYVQLTVSDTGQGMDKATVEHIFEP 661

Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP-LYDTS 814
           F          G+GTGLGL     +V  N G   ++S P +GT+  I  P L D +
Sbjct: 662 FFTTKEL----GKGTGLGLATVYGIVTQNRGFINVYSEPGQGTVFRINLPRLADQA 713



 Score = 46.2 bits (108), Expect = 0.021,   Method: Composition-based stats.
 Identities = 24/258 (9%), Positives = 55/258 (21%), Gaps = 16/258 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFK-MIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144
            + ID  G     ++   + +G  + +  +G  + ++    + D             T  
Sbjct: 358 IYGIDLEGNCTFCNKACLRMLGADSPEQYLGRNMHEIIHHSYPDGTPMPRKECMVHQTLR 417

Query: 145 GK-------TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG 197
            +          W  +G++   P++  + P   +  +  G     I              
Sbjct: 418 EEQGCHVNDEVFWRADGSSF--PVEYWSHP-QVKGGKVVGAVVAFI--DITDRKRLEEQY 472

Query: 198 KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257
           ++  K  S                  I            + +                +E
Sbjct: 473 RQSQKMESVGRLAGGVAHDFNNMLSVILGAAELSRRKLEEGEPIDAYLEVITNAAKRSSE 532

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
               L +             +N       +    L +                       
Sbjct: 533 ITRQLLAFSRKEVVSPRPLDLNQLIRESNKILARLISEDINLSFTPDPGLWLVSIDPSQV 592

Query: 318 GENLTPETV---DKCPIP 332
            + L    V   D  P  
Sbjct: 593 DQILMNLAVNARDAMPNG 610


>gi|120599603|ref|YP_964177.1| PAS/PAC sensor signal transduction histidine kinase [Shewanella sp.
           W3-18-1]
 gi|120559696|gb|ABM25623.1| PAS/PAC sensor signal transduction histidine kinase [Shewanella sp.
           W3-18-1]
 gi|319425700|gb|ADV53774.1| PAS/PAC sensor signal transduction histidine kinase [Shewanella
           putrefaciens 200]
          Length = 432

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 70/372 (18%), Positives = 152/372 (40%), Gaps = 33/372 (8%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           R    ++   + +     EA  D   +++ E  IL  N+    + G+       +     
Sbjct: 87  RRRVGQLAALLARFRQGAEALPDAAVVLDSEHNILWCNKLAQLILGFVWPQDNGQRIDNL 146

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
           +     S           L+L   +         +++LL +RI+           L   D
Sbjct: 147 IRHPDFSAYIKSAQYKEPLELPSPV--------SDKRLLEIRIMAY---GDRQLLLIARD 195

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I+  +Q +                + +F+A VSHE++TPLT + G+ E++++       +
Sbjct: 196 ITRIRQLEG--------------MRKEFVANVSHELKTPLTVLQGYLEMMQSM---AEPD 238

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIE-SGKMNLHFEPVSLDEAVSEAISLVQLYA 679
              ++    + +    +  +V  LL +S+IE +  +NL    V++ + +       +  A
Sbjct: 239 SMNVKPLALMQQQTQRMQSMVEQLLVLSRIEDAADINLENT-VNMSQLMEVLKEEAKALA 297

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
            + R  +     + +     +   ++    N++SNAI +T  GG+I +     +   +  
Sbjct: 298 QD-RYELSFYCESGLDS-HGNELQLRSACSNLISNAIRYTEPGGKITVQWRSVATGGL-F 354

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V DTG G+    + +  + F ++ +++  +  G+GLGL + K  ++ +  +  I S   
Sbjct: 355 SVTDTGEGIAPQHIARLTERFYRVDSARSRQTGGSGLGLAIVKHALNHHHSELTITSEVG 414

Query: 800 KGTLIEIIFPLY 811
           KG+    + PL+
Sbjct: 415 KGSTFSFVIPLH 426


>gi|323692287|ref|ZP_08106527.1| sensor protein [Clostridium symbiosum WAL-14673]
 gi|323503662|gb|EGB19484.1| sensor protein [Clostridium symbiosum WAL-14673]
          Length = 1107

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 109/535 (20%), Positives = 194/535 (36%), Gaps = 49/535 (9%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYSHG---NLFYANPSFLLLTKYKSVDDIEIAGG 365
                  +       +  +  P     ++      L   N        + S  +      
Sbjct: 302 EKAGREVERTAKFLTQLYNTVPCGILQFTTDPNHRLVSVNRMAWEFYGFASEAEYRSEVI 361

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
               +   K  D        L          ++     Q      + +        N   
Sbjct: 362 TPFQMVLGKDMDWVLKTAESLTLW----GDVASYTRESQKKDGKPVWVNVTMGRIVNADG 417

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEV----MQLCSILEATSDGIAIINREGIILST---- 477
           E +    +  +  + R  + + E +       L + +      I  IN            
Sbjct: 418 EEV-IQAVFTDITEVRRIEIESERQRLIENQSLRAAICTAYPLIMRINLTQDYYECFVEE 476

Query: 478 --------NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
                   + +  +LF Y  E +    ++ + E  +       + +  +   R+      
Sbjct: 477 QDSYTIDRSGSYDELFRYGAERV----YSAYREDYSSLFSRETIMKKFAEGEREIY-LEY 531

Query: 530 LGSTKEEKLLSLRIIIKKLPF-SSCYSLTMHDI-------SEWKQEKNKLSHAKKIAEKE 581
                +E+   +   +  +    +   + +  I       +E  +++  L  A   A+  
Sbjct: 532 RQKGMDEEYHWISSHLIYVDNPVNGDMIAIRMIKVLDAQRAEMAKQEQLLRDALAAAKAA 591

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
           +S KSDFL+R+SH+IRTP+ AIIG S +    +       R  +  + ID S   +L ++
Sbjct: 592 NSAKSDFLSRMSHDIRTPMNAIIGMSTI---GKLKMEDPVRVRDCFDKIDTSSRYLLSLI 648

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-AD 700
           ND+LD+SKIE+GKM L  EP    E ++E  S++   + E+ I       + + R    D
Sbjct: 649 NDILDMSKIETGKMTLTNEPFDFIEMIAELNSIIFPQSLERGIDYEIHHKDPLERCYIGD 708

Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV------ILRVRDTGVGMTNYELE 754
              +KQI +N+LSNA+ FT  GG+I   T     + +       + V DTG+GMT   LE
Sbjct: 709 SLRLKQILMNLLSNAVKFTAPGGKI--RTEIEEEKRINGFAIFKISVSDTGIGMTPEFLE 766

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           K  +PF Q          G+GLGL +   +V+   G     S    G+   +  P
Sbjct: 767 KLYQPFEQETLDSARNKIGSGLGLSIVYNLVNLMGGDIKAESRKGHGSRFTVRLP 821



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/214 (11%), Positives = 62/214 (28%), Gaps = 14/214 (6%)

Query: 390 DRTCIAASARLHT---IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
           + + +   A        +                 +   ++        +    ++ +  
Sbjct: 112 EGSGLYMKAHQRATFIYRRENGELRLAHLHHSVSYDDVKDDELFPVRAAKASYEQLQEM- 170

Query: 447 MEIEVMQLCSILEATSDGIAII--NREGIILSTNRAVSKLFGYPVE----DILRKPFTVF 500
           +     Q+  +L     G+ I   +        + ++ +L GY  +    D        F
Sbjct: 171 LGQREQQIELMLSQLPGGMQICKNDELYTTRWISPSLCQLLGYSSQTEYADRTGNCCKNF 230

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL--PFSSCYSLTM 558
           +       +     + L+      L        K   ++ +  + KK+           +
Sbjct: 231 ILPEDFESVRRVTGDELASGESYYL--EYRAIRKNGSIIWVADVGKKVLFQNEEILYSFI 288

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
            DI+E KQ + K+  A +  E+ +   +     V
Sbjct: 289 TDITEKKQNELKIEKAGREVERTAKFLTQLYNTV 322


>gi|270293636|ref|ZP_06199838.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270275103|gb|EFA20963.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 300

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 83/307 (27%), Positives = 140/307 (45%), Gaps = 19/307 (6%)

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK-----KLPFSSCYSLTMHDISE 563
           M  +L  +    L   L +      ++   +   + I                  +DI++
Sbjct: 1   MLDFLQNVKR-GLAHKLSREVRVLKEDGSFMWTHVNIIVERYMPEQNIIEIICINYDITQ 59

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            KQ +  L  AK+ AE+    KS FLA +SHEIRTPL AIIGFS ++             
Sbjct: 60  LKQTEAMLIQAKEKAEEADWLKSAFLANMSHEIRTPLNAIIGFSSLL----HYVENEQER 115

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            +Y + I+ +  L+L ++ND+LD+SKIE+G + LH E  +  E + E+I+  +       
Sbjct: 116 EQYISLINHNNQLLLKLINDVLDLSKIEAGHIELHSEWFNPAELIEESITEYERNVPA-G 174

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-SNEEVILRVR 742
           + +   +     +I  D   +KQI  N +SNA+  T  G    I   +    + + + V 
Sbjct: 175 VKLFARYPAAPGQIEHDPMRIKQILNNFISNALKNTVQG---YIEVYYETDTDGIRISVS 231

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG G+   +L    + F ++ +      +G GLGL + K++V+   G   + ST   G+
Sbjct: 232 DTGCGIPPDKLGMIFERFEKVDSF----AQGAGLGLSICKSIVEKMNGVITVDSTMGVGS 287

Query: 803 LIEIIFP 809
              +  P
Sbjct: 288 TFTVELP 294


>gi|121727325|ref|ZP_01680472.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae V52]
 gi|147674544|ref|YP_001217203.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae O395]
 gi|121630331|gb|EAX62728.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae V52]
 gi|146316427|gb|ABQ20966.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae O395]
 gi|227013560|gb|ACP09770.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae O395]
          Length = 1146

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 90/382 (23%), Positives = 159/382 (41%), Gaps = 24/382 (6%)

Query: 441 RINKRKMEIEVMQLC---SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP- 496
           R +++  ++   QL     +L+A    I I + +  ++ TN A  K++    E    +P 
Sbjct: 481 RSSEQVAKLSTEQLRWLTELLDAIPSMIFISDEKDEVVLTNAAYRKIYHTCCEKGCVQPQ 540

Query: 497 --FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554
              +     +        + +    +         +             I   +     Y
Sbjct: 541 PECSFLALPDQHEAEFSIIIQAPKSNCSIGEHYFHVTRRA---------ISHPINQRKYY 591

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
               +DI+E K+ +  L  + + A +    ++ FLA VSHE+RTP+ A++G  E++ ++ 
Sbjct: 592 LTLFNDITELKETEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGLMEILASR- 650

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
              L N            S   +   VND+LD SKIE+ ++ L     +L + +   +  
Sbjct: 651 ---LKNSESQLLLTNAISSAERLKLHVNDILDFSKIEAQQLQLDIGLYNLTDELGPLLRG 707

Query: 675 VQLYANEKRILIRTSFANN-IPRILADLRSVKQIALNILSNAIHFTPSGGQI-IISTTHT 732
            +  A  K I     ++ N +     D     QI  N+LSNAI FT  G  +  I     
Sbjct: 708 FEASAQLKEIEFDVIWSPNSLLLANFDALRFNQIVTNLLSNAIKFTDQGRVVFKIDVAPE 767

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
               + + V DTG GMT  ++E    PF Q  ++   R  GTGLG+ +   +++   GK 
Sbjct: 768 ---MLTIVVEDTGCGMTQTQIESLFVPFAQADSTITRRFGGTGLGMSIVANLIELMNGKI 824

Query: 793 YIFSTPAKGTLIEIIFPLYDTS 814
            + S   +GT I++  PL   +
Sbjct: 825 EVKSEFEQGTQIQVNLPLVTQT 846


>gi|187479561|ref|YP_787586.1| phosphate regulon two-component system sensor kinase [Bordetella
           avium 197N]
 gi|115424148|emb|CAJ50701.1| phosphate regulon two-component system sensor kinase [Bordetella
           avium 197N]
          Length = 440

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 79/408 (19%), Positives = 150/408 (36%), Gaps = 29/408 (7%)

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIE--PEDVDTRINKRKMEIEVMQLCSILEAT 461
            W  +        P                         R    +++  +  + +  +A 
Sbjct: 45  SWRLQRVSDWAHNPESAPPAGVGPWEDILAPLYRYTRARRRELAELQDTMQGMLAAAQAL 104

Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
            DG+  +N +  I   NR   +     +     +     L                    
Sbjct: 105 PDGVVTLNEDFQIEWGNRVARRHLNLRLPADRGQNLLNLLRAPEFVAYA----------Q 154

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE 581
           R    +  L    +     + +I      +S   L   D+++ ++ +             
Sbjct: 155 RGVWPEPILVRVGQSGQERVMMIQMAAYATSRRLLISRDVTQIEKLETT----------- 203

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
              + DF+A VSHE+RTPLT + GF E + +     LG  +  +Y   +      +  IV
Sbjct: 204 ---RRDFVANVSHELRTPLTVLAGFLETLHDMPPEALGEEQRSQYLAMMLEQAQRMQAIV 260

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701
            DLL +S +ES   +     V++   +  A    +  +  +        A ++  +L + 
Sbjct: 261 EDLLTLSTLESSPGS-DPVAVNISTLLLTARQQAEALSGGRH-QFEWHIAPDL-DVLGNG 317

Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761
             +     N+L+NA+ +TP GG I +    T +      VRDTG+G+    + +  + F 
Sbjct: 318 TELASALSNLLTNAVRYTPEGGHITVRWEATPDGGACYSVRDTGIGIPARHIPRLTERFY 377

Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           ++   +     GTGLGL + K +V  +  +  I S P KG++  ++FP
Sbjct: 378 RVDRGRSRAAGGTGLGLAITKHIVLRHDAELLIKSEPGKGSVFSLLFP 425


>gi|172056681|ref|YP_001813141.1| integral membrane sensor signal transduction histidine kinase
           [Exiguobacterium sibiricum 255-15]
 gi|171989202|gb|ACB60124.1| integral membrane sensor signal transduction histidine kinase
           [Exiguobacterium sibiricum 255-15]
          Length = 464

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 71/248 (28%), Positives = 128/248 (51%), Gaps = 5/248 (2%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E  +    L+   +   +    + +FLA VSHE+RTPL+ I G++E+++++        +
Sbjct: 213 EIGELAETLNKMAESLGEVDEQRKEFLANVSHELRTPLSYIRGYTEMMQDKALDEKTRDQ 272

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
              Y   I+R    +  +VNDLLD++++E     +  +P+   + + + +  ++  A  K
Sbjct: 273 ---YYQIIERETERLQRLVNDLLDLAQLERDSYPMTKQPLVFSQVLEDVVYRMEPIAKAK 329

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
            + I T F  +   +L D   ++Q+  N+L NA+ +TP+   I +ST  T  E+ I  +R
Sbjct: 330 GVSIITDFDPSQI-VLGDNDRLEQVIGNLLDNALRYTPASKHIYLSTK-TDGEQTICSIR 387

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G G+    LE+  K F ++  S+  +  GTGLGL + K ++D + G     S   +GT
Sbjct: 388 DEGEGIPPEHLERLTKRFYRVDKSRTRKDGGTGLGLAITKHIIDRHDGTISFESVLGQGT 447

Query: 803 LIEIIFPL 810
            + I  PL
Sbjct: 448 TVLITLPL 455


>gi|224826677|ref|ZP_03699778.1| PAS/PAC sensor signal transduction histidine kinase [Lutiella
           nitroferrum 2002]
 gi|224601278|gb|EEG07460.1| PAS/PAC sensor signal transduction histidine kinase [Lutiella
           nitroferrum 2002]
          Length = 887

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 83/640 (12%), Positives = 210/640 (32%), Gaps = 38/640 (5%)

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244
              R              +   L +   G  S E    ++               + +  
Sbjct: 275 RHIRRRVSAEEE----RDRVYRLSQDLLGIISPEGTLLEVNPAFETVLGYTQAQLIGTSF 330

Query: 245 EYYAHKDDV--LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302
             Y H  +   LK   + +L +++S    +    T     +        L  +       
Sbjct: 331 LSYLHPSERDMLKEGFFDMLGADQSHRYVETRVLTREGATHWIVWALSPLPESGVIYVSG 390

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIE 361
                         +         D   +    +   G + Y NP+F  +T Y+  + ++
Sbjct: 391 RDITAKKEAQEALWQESTFRKAMEDSLVVGLRAIDLEGRITYVNPAFCDITGYREQELLD 450

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                       +  +   +    +  +             I+      + +  +     
Sbjct: 451 QLPP----YPYWRSGEAAELHQRHMAAALTGNAPQDGLETQIRRKDGKEIHVNLLISPLI 506

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRA 480
           +   ++        +  + +  K+++E    +  +++E     +A+++     +L  N+ 
Sbjct: 507 DHDGQHTGWMTAMTDITERQEAKQRLEASHERFVTVIEGLDAAVAVVDPASHELLFCNQH 566

Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
             + F    +++L +       + + S  +  L  ++    R  L+     +     L +
Sbjct: 567 YRQWF--DPDNVLGQ-------EESASCCDLRLAFLMRDAERSELDLQLQLANPPRWLSA 617

Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH--KSDFLARVSHEIRT 598
            R  ++ +       + + DI++  + + +     +  +  S      +  + ++HE+  
Sbjct: 618 RRRQVRWVDGRPTLMVILTDITQQHEAEQRYEQQMEKLQATSRLVTMGEMASTLAHELNQ 677

Query: 599 PLTAIIGF-SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           PL+AI  + +  I+  R G       +     I         IV  + +  K    +   
Sbjct: 678 PLSAIANYQAGCIERLRQGRASAESLLPVMEKITAQAERAGKIVRRVREFVK----QSEP 733

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
             +P  L + V   +++  + A      I       +P +  D   ++Q+ LN++ N I 
Sbjct: 734 DRKPCQLTDIVEATLAIADIEARRYAATIDLQLPPRLPEVCVDPILIEQVLLNLIKNGIE 793

Query: 718 FT----PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
                 P+  Q+I+S    +   V + + D G G+     E+    F           EG
Sbjct: 794 AMQDTEPARRQLIVSADVLNPRRVEVAIADRGHGVPADLKERLFDAFFTTKK------EG 847

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
            G+GL + + +++ + G+ ++   P  G++  +  P+ + 
Sbjct: 848 MGMGLNICRTIIEFHQGQLWVEDNPDGGSIFRLTLPVTEA 887



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 52/494 (10%), Positives = 129/494 (26%), Gaps = 54/494 (10%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID--PNNHIGDLLKRQNTWYGK 146
           I   G L E++      +G    ++IG            D         L   Q+  Y +
Sbjct: 301 ISPEGTLLEVNPAFETVLGYTQAQLIGTSFLSYLHPSERDMLKEGFFDMLGADQSHRYVE 360

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
           T +   EG   ++   L+ LP    +        +          + +    +       
Sbjct: 361 TRVLTREGATHWIVWALSPLP---ESGVI-----YVSGRDITAKKEAQEALWQESTFRKA 412

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK-------DDVLKTEKY 259
           + +           +  I         +    +   L +   +         ++ +    
Sbjct: 413 MEDSLVVGLRAIDLEGRITYVNPAFCDITGYREQELLDQLPPYPYWRSGEAAELHQRHMA 472

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
             LT        +      +  +         L ++  +   +++     +      +  
Sbjct: 473 AALTGNAPQDGLETQIRRKDGKEIHVNLLISPLIDHDGQHTGWMTAMTDITERQEAKQRL 532

Query: 320 NLTPE----TVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
             + E     ++       V       L + N  +       +V   E +     L  A 
Sbjct: 533 EASHERFVTVIEGLDAAVAVVDPASHELLFCNQHYRQWFDPDNVLGQEESASCCDLRLAF 592

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
            + D    +  +  +        SAR   ++W       M                   I
Sbjct: 593 LMRDAERSELDLQLQLANPPRWLSARRRQVRWVDGRPTLM------------------VI 634

Query: 434 EPEDVDTRINKRKMEIEVMQLCSI--LEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
             +       +++ E ++ +L +   L    +  + +  E      N+ +S +  Y    
Sbjct: 635 LTDITQQHEAEQRYEQQMEKLQATSRLVTMGEMASTLAHE-----LNQPLSAIANYQAGC 689

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
           I R        ++   VM     +           +  +  ++ ++         +L   
Sbjct: 690 IERLRQGRASAESLLPVMEKITAQAERAGKIVRRVREFVKQSEPDR------KPCQLTDI 743

Query: 552 SCYSLTMHDISEWK 565
              +L + DI   +
Sbjct: 744 VEATLAIADIEARR 757


>gi|116669431|ref|YP_830364.1| periplasmic sensor signal transduction histidine kinase
           [Arthrobacter sp. FB24]
 gi|116609540|gb|ABK02264.1| periplasmic sensor signal transduction histidine kinase
           [Arthrobacter sp. FB24]
          Length = 555

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 88/409 (21%), Positives = 176/409 (43%), Gaps = 28/409 (6%)

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468
             + +                Q  +E +D   R+  ++ + +   L S+LE    G+  +
Sbjct: 168 PVMMLGIGVSVSVLTLSMVRQQRDLEEKDAQLRVTLKESKRQEELLNSVLETVHMGVLAV 227

Query: 469 NREGIILSTNRAVSKLFGYP---VEDILRKPFTVFLEQNTPSVMNHYLTEILSL--DLRQ 523
           + +G  +  NR   +          D   +   +  + +  + +      +         
Sbjct: 228 DADGHDILMNRKQRENHRLATPAGNDDPNESQLLVFQADRTTTVPVEQRPVRRAVMGESF 287

Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKE 581
           T   + LGS  E++ ++      +    +     +   D+++                  
Sbjct: 288 TDNLVWLGSGSEQRAITTSARAMRDQDGAFAGSVIVFSDVTDLVN--------------A 333

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
            + K DF+A VSHE RTPLT+I+G+ E++ +   G      + E    I R+   +L +V
Sbjct: 334 LAAKDDFVANVSHEFRTPLTSILGYVELLLDDHDGLRAP--HREALMIIRRNAERLLGLV 391

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701
           +DLL  S+  SG++ +  + V++ E V  +IS     A   ++ +R      +     D 
Sbjct: 392 SDLLA-SR--SGQLIVSPQAVNVAELVRASISAALPRAAAAKVRLRADAPERL-EAHVDS 447

Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761
             + Q+  N++SNAI ++P+GG +++S   +    ++ RV DTG+GM++ +  +    F 
Sbjct: 448 GRMSQVLDNLVSNAIKYSPNGGDVVVSLD-SDGSHLVCRVSDTGMGMSDKDQAEVFTKFF 506

Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           +  N +     G GLGL ++KA+V+A+ G   + S   +GT   +  P+
Sbjct: 507 RTGNVRNTAIPGVGLGLSISKAIVEAHGGSIQLRSALGEGTTFTVRVPV 555


>gi|262169665|ref|ZP_06037356.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae RC27]
 gi|262021899|gb|EEY40609.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae RC27]
          Length = 1176

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 90/382 (23%), Positives = 159/382 (41%), Gaps = 24/382 (6%)

Query: 441 RINKRKMEIEVMQLC---SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP- 496
           R +++  ++   QL     +L+A    I I + +  ++ TN A  K++    E    +P 
Sbjct: 511 RSSEQVAKLSTEQLRWLTELLDAIPSMIFISDEKDEVVLTNAAYRKIYHTCCEKGCVQPQ 570

Query: 497 --FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554
              +     +        + +    +         +             I   +     Y
Sbjct: 571 PECSFLALPDQHEAEFSIIIQAPKSNCSIGEHYFHVTRRA---------ISHPINQRKYY 621

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
               +DI+E K+ +  L  + + A +    ++ FLA VSHE+RTP+ A++G  E++ ++ 
Sbjct: 622 LTLFNDITELKETEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGLMEILASR- 680

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
              L N            S   +   VND+LD SKIE+ ++ L     +L + +   +  
Sbjct: 681 ---LKNSESQLLLTNAISSAERLKLHVNDILDFSKIEAQQLQLDIGLYNLTDELGPLLRG 737

Query: 675 VQLYANEKRILIRTSFANN-IPRILADLRSVKQIALNILSNAIHFTPSGGQI-IISTTHT 732
            +  A  K I     ++ N +     D     QI  N+LSNAI FT  G  +  I     
Sbjct: 738 FEASAQLKEIEFDVIWSPNSLLLANFDALRFNQIVTNLLSNAIKFTDQGRVVFKIDVAPE 797

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
               + + V DTG GMT  ++E    PF Q  ++   R  GTGLG+ +   +++   GK 
Sbjct: 798 ---MLTIVVEDTGCGMTQTQIESLFVPFAQADSTITRRFGGTGLGMSIVANLIELMNGKI 854

Query: 793 YIFSTPAKGTLIEIIFPLYDTS 814
            + S   +GT I++  PL   +
Sbjct: 855 EVKSEFEQGTQIQVNLPLVTQT 876


>gi|87311452|ref|ZP_01093572.1| sensor histidine kinase/response regulator [Blastopirellula marina
           DSM 3645]
 gi|87285864|gb|EAQ77778.1| sensor histidine kinase/response regulator [Blastopirellula marina
           DSM 3645]
          Length = 1006

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 104/454 (22%), Positives = 187/454 (41%), Gaps = 19/454 (4%)

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
           V  +    G      A     +N+         D     A         +      +T  
Sbjct: 115 VAVLFARDGKEFRRIASYGVPSNSDIQNDFTLEDGLLGRAVKDNRIFMLDDVPDGYLTLG 174

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476
                 +            +     +    +     +   +LE  S+ +AI      + S
Sbjct: 175 SALGNGKPKHLAICPMAAEDITYAVLEIGFLSEVDGRTRLLLERVSESVAIA-----VRS 229

Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
            N          +E+  R+   +  +     V N  L E  +             +  E+
Sbjct: 230 AN--YRAHLQTLLEETQRQSEELQAQSEELRVANEELEEQGNALKETATRLELQQAELEQ 287

Query: 537 KLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
               L    ++L                 + K  L H     E+ S +KSDFLA +SHE+
Sbjct: 288 TNTQLEEQTQQLEAQRDDLA---------RTKLSLQHQAADLERASRYKSDFLANMSHEL 338

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTPL + +  ++++ +   G L     +++A  I  +GN +L++++D+LD+SKIE+G+M 
Sbjct: 339 RTPLNSSLILAKLLADNPQGNLS-EEQVKFAKTIQSAGNDLLNLISDILDLSKIEAGQME 397

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNA 715
           L  E + + + + E    +Q  A +K +   T  A + P+I+  D + ++Q+  N+LSNA
Sbjct: 398 LRLEQLRVQKLIDEVSRTMQPLARQKELRFETQIAPDCPKIIFTDRQRLEQVLKNLLSNA 457

Query: 716 IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           I FT  G ++ +S T  SN+ + L V DTG+G++  + +   + F Q  +S   +  GTG
Sbjct: 458 IKFTEQG-EVKLSVTPLSNQRLALAVSDTGIGISEEQQQIVFEAFRQADSSSHRKHGGTG 516

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           LGL ++K       G+  + S P  G+   +I P
Sbjct: 517 LGLSISKEFSRLLGGELRLESKPGDGSTFTLIIP 550


>gi|225874315|ref|YP_002755774.1| sensory transduction histidine kinase [Acidobacterium capsulatum
           ATCC 51196]
 gi|225792533|gb|ACO32623.1| sensory transduction histidine kinase [Acidobacterium capsulatum
           ATCC 51196]
          Length = 670

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 98/512 (19%), Positives = 195/512 (38%), Gaps = 41/512 (8%)

Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYSHG--NLFYANPSFLLLTKYKSVD-DIEIAGGLS 367
            +    E E       +   +  FV+  G  +  + N     +         +     L 
Sbjct: 172 ATRKLRESEARLKIATEAAQLGVFVWDPGVDHPVWENDRLYEIFGRDPEQGAVTGEEFLE 231

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
             L      D    K V     + T +     +            +       ++     
Sbjct: 232 RYLHPDFHED--FQKAVARTVIEGTPLHFEGLM---TRADGAVRRIEVRGNSHSDPTGSQ 286

Query: 428 MPQNGIEPEDVDTRINKRKMEIE---VMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
               G   +  + R  ++ +        +L +I+ ++ D I   +  GII++ N A +++
Sbjct: 287 AKVLGTVRDITELREAEQVVRDRVKHQDELAAIVSSSDDVILSKDLNGIIVTWNEAATRV 346

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
           FGY  E+++       + ++        L+ I +    +     T+  T++ +L+ + I 
Sbjct: 347 FGYTAEEMIGTSILRLIPEDLHHDEEMILSNIRAGK--RMKHFETVRKTRDGRLIDVSIS 404

Query: 545 IKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
           I  L  +S   +     + DIS+ ++ +  L  A+KIA           A ++HEI  PL
Sbjct: 405 ISPLRDASGRVIGASKILRDISDRRRMEQSLLQAEKIA-----ATGRMAATIAHEINNPL 459

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
            A++    +++      + +     Y    +   N V  I    L   +  +  +     
Sbjct: 460 EAVMNLLYLLR----PKVTDAEGRAYLANAESELNRVSHIAKQTLGYYREVASAV----- 510

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720
           PV L     +A+++ +       I +   FA+   +++     + Q+  N+++NAI+   
Sbjct: 511 PVCLTAIAEQAVAIYEPRCMAAGIRVERRFASE-RKVVLRRGEMMQVISNLITNAIYAMS 569

Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
            GGQ+ +S   T+   V L V DTG+G+    L K  + F  +  S      GTG+GL +
Sbjct: 570 DGGQLSVSVRDTAEG-VELVVGDTGIGIAPEVLPKVFEAFFTMRPSV-----GTGIGLFV 623

Query: 781 AKAMVDANMGKFYIFST---PAKGTLIEIIFP 809
           AK  V+ + G+  I S      +GT + +  P
Sbjct: 624 AKQFVEGHGGRIEIMSRREGEGRGTEVRVFLP 655



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 51/537 (9%), Positives = 132/537 (24%), Gaps = 69/537 (12%)

Query: 80  PRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR 139
           P      W   A   L   ++    T+ +   + +G    +V           +   L +
Sbjct: 63  PFPTMLMW--GAELALLY-NDAAIATLSDKHPEALGRGYREVFAEAWELVGEDMEACLYK 119

Query: 140 QNTWYGKTTLWP--IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG 197
             T      L P   +G         +  P+Y  N +  G   F                
Sbjct: 120 GKTAVRDNMLIPILRDGVMEDHFWSYSLSPVY-ENGQVCGV--FDAFRNMTESVIATRKL 176

Query: 198 KRLDKKFSHLHEIK-----------KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY 246
           +  + +     E                       Y+IF +      +  +  +      
Sbjct: 177 RESEARLKIATEAAQLGVFVWDPGVDHPVWENDRLYEIFGRDPEQGAVTGEEFLERYLHP 236

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
             H+D     +       E + L  +      +      +    +  + +    + L   
Sbjct: 237 DFHEDFQ---KAVARTVIEGTPLHFEGLMTRADGAVRRIEVRGNSHSDPTGSQAKVLGTV 293

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSH--------GNLFYANPSFLLLTKYKSVD 358
              +     ++      +  D+                  G +   N +   +  Y + +
Sbjct: 294 RDITELREAEQVVRDRVKHQDELAAIVSSSDDVILSKDLNGIIVTWNEAATRVFGYTAEE 353

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
            I    G S L   P+   ++    +   R+ +          T        + ++    
Sbjct: 354 MI----GTSILRLIPEDLHHDEEMILSNIRAGKRMKHFETVRKT---RDGRLIDVSISIS 406

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM-----QLCSI----LEATSDGIA--- 466
              +     +  + I  +  D R  ++ +          ++ +     +    + +    
Sbjct: 407 PLRDASGRVIGASKILRDISDRRRMEQSLLQAEKIAATGRMAATIAHEINNPLEAVMNLL 466

Query: 467 ------IINREGIILSTN---------RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
                 + + EG     N             +  GY  E     P  +         +  
Sbjct: 467 YLLRPKVTDAEGRAYLANAESELNRVSHIAKQTLGYYREVASAVPVCLTAIAEQAVAIYE 526

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSL-----RIIIKKLPFSSCYSLTMHDISE 563
                  + + +          +  +++ +        I  +      S+++ D +E
Sbjct: 527 PRCMAAGIRVERRFASERKVVLRRGEMMQVISNLITNAIYAMSDGGQLSVSVRDTAE 583



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/323 (9%), Positives = 80/323 (24%), Gaps = 23/323 (7%)

Query: 280 LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSH 338
                           +    E+           ++ E    T   +   P P   ++  
Sbjct: 13  EEARKADTLIAGSSEMAARIREHDWRGTALGPLDHWSETLLATVNLMLNSPFPTMLMWGA 72

Query: 339 GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398
                 N + +     K  + +    G   +           ++  +             
Sbjct: 73  ELALLYNDAAIATLSDKHPEALGR--GYREVFAEAWELVGEDMEACLYK---GKTAVRDN 127

Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458
            L  I  +                +  +            ++ I  RK+     +L    
Sbjct: 128 MLIPILRDGVMEDHFWSYSLSPVYENGQVCGVFDAFRNMTESVIATRKLRESEARLKIAT 187

Query: 459 EATSDGIAIINRE-GIILSTNRAVSKLFGYPVED---ILRKPFTVFLEQNTPSVMNHYLT 514
           EA   G+ + +      +  N  + ++FG   E       +    +L  +        + 
Sbjct: 188 EAAQLGVFVWDPGVDHPVWENDRLYEIFGRDPEQGAVTGEEFLERYLHPDFHEDFQKAVA 247

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNK 570
             +       L    L +  +  +  + +        +        T+ DI+E ++ +  
Sbjct: 248 RTVIEGTP--LHFEGLMTRADGAVRRIEVRGNSHSDPTGSQAKVLGTVRDITELREAEQV 305

Query: 571 LSHAKKIAEKESSHKSDFLARVS 593
           +            H+ +  A VS
Sbjct: 306 VRD-------RVKHQDELAAIVS 321



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/339 (9%), Positives = 92/339 (27%), Gaps = 18/339 (5%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL-HIDPNNHIGDLLKRQNTWYGKTT 148
           D +G +   +E   +  G  A +MIG  +  +     H D    + ++   +   + +T 
Sbjct: 331 DLNGIIVTWNEAATRVFGYTAEEMIGTSILRLIPEDLHHDEEMILSNIRAGKRMKHFETV 390

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +G    + + ++  P+   +    G     I+                      L 
Sbjct: 391 RKTRDGRL--IDVSISISPLRDASGRVIGASK--ILRDISDRRRMEQ----------SLL 436

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           + +K  ++            +P   +     +       A     L   +  L      +
Sbjct: 437 QAEKIAATGRMAATIAHEINNPLEAVMNLLYLLRPKVTDAEGRAYLANAESELNRVSHIA 496

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
                 +  +             +   +   +E         +   F     +     + 
Sbjct: 497 KQTLGYYREVA---SAVPVCLTAIAEQAVAIYEPRCMAAGIRVERRFASERKVVLRRGEM 553

Query: 329 CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388
             +   + ++     ++   L ++   + + +E+  G + +  AP++          +  
Sbjct: 554 MQVISNLITNAIYAMSDGGQLSVSVRDTAEGVELVVGDTGIGIAPEVLPKVFEAFFTMRP 613

Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
           S  T I        ++ +      M+    E        
Sbjct: 614 SVGTGIGLFVAKQFVEGHGGRIEIMSRREGEGRGTEVRV 652


>gi|172063287|ref|YP_001810938.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria
           MC40-6]
 gi|171995804|gb|ACB66722.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria
           MC40-6]
          Length = 663

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 91/414 (21%), Positives = 158/414 (38%), Gaps = 21/414 (5%)

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ--LCSILEATSDGIAI 467
            L M   P    ++                       +   V    L  +++A+ D I  
Sbjct: 100 VLVMAVKPLLANDRLRGAEDAEEGNARTPRREPEPGSLARSVDDTVLRRVVDASPDAIVG 159

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
           ++    I S N A  +LFG      +    T  +      +     +   +      L+ 
Sbjct: 160 VDVARRITSWNPAARRLFGIDAAAAIGHDVTTLIAPRWLRLHPVPASFADAGAPAGPLD- 218

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD-----------ISEWKQEKNKLSHAKK 576
             L   ++            +  +      +                  +       A+ 
Sbjct: 219 -ILCLRRDGSRFRATFTASPIVDAQGNCTGLSMTLREARERRRCEQRDLRMLRGARDARV 277

Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
            A++ +  K + LA VSHE+RTPL  I G+ EV+++       +    +  + IDRS   
Sbjct: 278 QADESNRMKDELLATVSHELRTPLNVIYGWVEVLRSGEGQGFAH----QAIDAIDRSARS 333

Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696
           +  +V DLLD S + +G++ L   PV L   V E++  +   A    + + T  A     
Sbjct: 334 LSRMVGDLLDASSLATGRVRLERTPVDLVRIVQESVREIGETAEANGLDLSTECAMPSCV 393

Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKA 756
           I AD   ++Q+  N+LSNAI FTP GG+I +S    +   V L V DTG G++   L   
Sbjct: 394 IAADAERLRQLLSNLLSNAIKFTPRGGRIKVSLNP-AGARVRLSVADTGQGISAERLPHL 452

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFP 809
              F +   +  +   G GLGL + + +   + G+    S    +GT + ++ P
Sbjct: 453 FDTFSRPEGAPALPKRGLGLGLSIVRNIARLHGGEVAAASEGAGRGTTVTVMLP 506



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 49/540 (9%), Positives = 106/540 (19%), Gaps = 70/540 (12%)

Query: 41  KENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISE 100
            E     +  +         SV +T                       +D    +   + 
Sbjct: 120 AEEGNARTPRREPEPGSLARSVDDTV-------LRRVVDASPDAIV-GVDVARRITSWNP 171

Query: 101 ELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL-WPIEGTNLYV 159
              +  G  A   IG  +  +     +  +                  L    +G+    
Sbjct: 172 AARRLFGIDAAAAIGHDVTTLIAPRWLRLHPVPASFADAGAPAGPLDILCLRRDGSRFRA 231

Query: 160 PIDLAALPIYSRNREFSGFR---------GFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
               +  PI       +G                   R+    R    + D+      E+
Sbjct: 232 TFTAS--PIVDAQGNCTGLSMTLREARERRRCEQRDLRMLRGARDARVQADESNRMKDEL 289

Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270
               S   +   ++                +        +     +     L    S   
Sbjct: 290 LATVSHELRTPLNVIYGWVEVLRSGEGQGFAHQAIDAIDRSARSLSRMVGDLLDASSLAT 349

Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC- 329
            +       ++     Q        + E+            S           + +    
Sbjct: 350 GRVRLERTPVDLVRIVQESVREIGETAEANGLDLSTECAMPSCVIAADAERLRQLLSNLL 409

Query: 330 -PIPFFVYSHGNL-FYANPSFLLL-TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
                F    G +    NP+   +            A  L  L D     +     P   
Sbjct: 410 SNAIKFTPRGGRIKVSLNPAGARVRLSVADTGQGISAERLPHLFDTFSRPEGAPALPKRG 469

Query: 387 YRSDRTCIAASARLHTIQW--------NRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
                + +   ARLH  +                M        +     +  +G      
Sbjct: 470 LGLGLSIVRNIARLHGGEVAAASEGAGRGTTVTVMLPADLGADDPTGHPVRPSGASTAVA 529

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
                                     + +++ +    ++  A  +  G  V         
Sbjct: 530 LDGRR---------------------VLVVDDDATSRASLAAALETLGAEV--------- 559

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM 558
                +T    +  L  +        L      +  +     L   I+ LP        +
Sbjct: 560 -----STAQSGHDALDVVAQQHPSVVLSD---LAMPDGDGFWLLDHIRDLPDGGGRLPVV 611


>gi|291086239|ref|ZP_06571413.1| sensor protein GacS [Citrobacter youngae ATCC 29220]
 gi|291068626|gb|EFE06735.1| sensor protein GacS [Citrobacter youngae ATCC 29220]
          Length = 811

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 85/334 (25%), Positives = 152/334 (45%), Gaps = 19/334 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +FG+ +   +  P    +               L   +   +             +++ +
Sbjct: 86  IFGWRLMRDVTGPIRNMVNTVDR-----IRRGQLDSRVEGFMLGELDMLKNGINSMAMSL 140

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 141 AAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTP 200

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+ +          N    ++ N I+RS N +L I+ND+LD SK+E+GK+ L  
Sbjct: 201 LNGVIGFTRLTLKTEL----NTTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILES 256

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P  L   + + ++L+   +++K + +  +  N++P  ++ D   ++Q+  N++ NAI F
Sbjct: 257 IPFPLRSTLDDVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKF 316

Query: 719 TPSGGQIIISTTHTS--NEEVILRV--RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           T  GG I I     +  N +V + V  RDTG+G+   +  +  + F Q   S   R  GT
Sbjct: 317 T-EGGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGT 375

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           GLGL + + +V+   G     S P +G+      
Sbjct: 376 GLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 409


>gi|262196327|ref|YP_003267536.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM
            14365]
 gi|262079674|gb|ACY15643.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM
            14365]
          Length = 1406

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 92/686 (13%), Positives = 213/686 (31%), Gaps = 46/686 (6%)

Query: 141  NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
            + + G++  W    T        A     +     +      +   N             
Sbjct: 595  DAFLGESMRWLPSRTGGAAADVQAIAATPADAGHTAALPRVLLADDNADMRAYVGRLLSE 654

Query: 201  DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
                  + + +    +V     ++       P L     ++++ +  A +D  +      
Sbjct: 655  RFAVEAVPDGRSALEAVRARPPELVLADVMMPQLSGFELLAAIRDDPAIRDTPVI----- 709

Query: 261  LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
            LL++        E       +  TK      L        +    R   + +   ++   
Sbjct: 710  LLSARAGEEARVEGMDAGADDYLTKPFSARELLARVSAHVQMSRMRQEANAALLAEQARL 769

Query: 321  LTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
                   +    + V         +    +     + D  +    +  L+ A    D   
Sbjct: 770  RLALETGRLG-AWQVNIATRELRCSAQCRVNFGV-AEDVADDELDIDMLMGALDPDDREH 827

Query: 381  IK-PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
            ++       S         R   + W+  +   +        ++        G+  +  +
Sbjct: 828  LRAQARRAISLGGDYDGEYR---VVWSDRSVHWLAVRGRALYDEHGRPTHVMGVSLDVTE 884

Query: 440  TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
             +  +  +E       ++ +     + +   +G     +R   +  G    + L   +  
Sbjct: 885  RKHAQHALEAREEWFRTMADTAPALLWVTAPDGSCTFLSRRWYEFTGQGEGEALGSGWLQ 944

Query: 500  FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YS 555
             +  +  +        + +   ++          K+          +           Y 
Sbjct: 945  IVHPDDRARAMTIF--LGANGEQRPFALDYRLRRKDGSYRWAIAAGRPRFSDDGAFLGYV 1002

Query: 556  LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
             ++ D+ E KQ +  L        +    K +FLA ++HE+R PL  +    E++     
Sbjct: 1003 GSVIDVHERKQAEEAL-------READRRKDEFLATLAHELRNPLAPLRTGLELLS---V 1052

Query: 616  GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
                        + + R  + ++ +V+DLLD+++I  GK+ L    + L   V+ AI   
Sbjct: 1053 AGADAAEQARTLDMMTRQVSHMVRLVDDLLDMNRIRRGKIQLKRARLELSPLVARAIEAT 1112

Query: 676  QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
            +       + +  +       + AD   + Q+  N+L NA  FTPSGG++ +S      +
Sbjct: 1113 RTVCGRAGVTL-VAPPATAIEVHADADRILQVVHNLLHNACKFTPSGGEVQVSVRREGRD 1171

Query: 736  EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL--------AKAMVDA 787
             V + V+D+G+G+    L+   + F Q+       G                  K+ V+ 
Sbjct: 1172 AV-VCVQDSGIGIDRAHLDGIFEMFAQVDAGNAGSGG--------GLGIGLTLVKSFVEM 1222

Query: 788  NMGKFYIFST-PAKGTLIEIIFPLYD 812
            + G     S    +G++  +  P  D
Sbjct: 1223 HGGSVSAASEGLGQGSVFTMRLPALD 1248



 Score =  256 bits (653), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 91/574 (15%), Positives = 185/574 (32%), Gaps = 41/574 (7%)

Query: 279 NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YS 337
              +     +        +    +   +N     A +          +     P ++ + 
Sbjct: 5   EQTETPALAFLAGGGEMGERMRAFDWSQNPLGEPAEWSNSLKTAVRIMLTSRQPVWIGWG 64

Query: 338 HGNLFYANPSFLLLTKYKSVDDIEIA--GGLSTLLDAPKLSDNNAIKP-----------V 384
              +   N     +   +  D +  A     S L D      + A++            +
Sbjct: 65  PELIHLYNDPCKAIVGGRHPDALGQALREVWSELWDDIGPMLDRAMRENEGVYLESELFI 124

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
           M     R     +     I  + +              Q      Q  +  E      + 
Sbjct: 125 MERHGYREETYYTFSYSPIPEDDDGGAGGILCANTDDTQRVIGERQLALLRELAARTADT 184

Query: 445 RKMEIEVMQLCSILEA----TSDGIAIINREGIILSTNRA------VSKLFGYPVEDILR 494
           R  +    +  +               + R+ ++     +       +            
Sbjct: 185 RTWQQACERGAAAFAHDPQDLPFACIYLLRDDVVELAACSGIEAGHAAAPLRLERGADAL 244

Query: 495 KPFTVFLEQ-----NTPSVMNHYLTEILSLDLRQTLEKITL---GSTKEEKLLSLRIIIK 546
            P    L          +     L           +  + +   G       L + +   
Sbjct: 245 WPVREALSCGDILVEDIAGRFDALPRAAWRVPPSRVAIVPMATAGPAAPSGALVVGLSPL 304

Query: 547 KLPFSSCYSLTMHDISEWK------QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
           +             + +        Q  ++     +   +    K+ F + VSHE+RTPL
Sbjct: 305 RALDDGYRRFLGLVVGQLASGIASAQAYDEARMRAEALAELDRAKTAFFSNVSHELRTPL 364

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
           T ++G  E    +    L +    E    + R+G  +  +V  +LD S+IE+G+M   FE
Sbjct: 365 TLMLGPLEEALARPAHGL-DAALREDLEIVHRNGLRLRKLVGTMLDFSRIEAGRMQARFE 423

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720
           P++L    +E  S+ +       + +          +  D    ++I LN+LSNA+ FT 
Sbjct: 424 PMALASFTAELASVFRSAVEHAGLRLEIDCPPLSAPVYVDREQWEKIVLNLLSNALKFTL 483

Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
            G +I +S     +  V L V DTGVG+   ++E+  + F ++ +++    EGTG+GL L
Sbjct: 484 EG-EIRVSLCEREDA-VELAVSDTGVGIPEDQIERVFERFHRVADARGRSHEGTGIGLSL 541

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
            + +V  + G   + S   +G++  +  PL    
Sbjct: 542 VRELVHLHGGTVRVTSELDRGSVFLVRLPLGAAH 575



 Score = 65.0 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 23/250 (9%), Positives = 51/250 (20%), Gaps = 7/250 (2%)

Query: 71   ENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH-IDP 129
            E  F            W     G    +S    +  G    + +G     +         
Sbjct: 896  EEWFRTMADTAPA-LLWVTAPDGSCTFLSRRWYEFTGQGEGEALGSGWLQIVHPDDRARA 954

Query: 130  NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRV 189
                      Q  +     L   +G+  Y     A  P +S +  F G+ G  I      
Sbjct: 955  MTIFLGANGEQRPFALDYRLRRKDGS--YRWAIAAGRPRFSDDGAFLGYVGSVI--DVHE 1010

Query: 190  DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH 249
                    +  D++                       +           + +   +    
Sbjct: 1011 RKQAEEALREADRRKDEFLATLAHELRNPLAPLRTGLELLSVAGADAAEQ-ARTLDMMTR 1069

Query: 250  KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
            +   +      LL        + +             +     +     +   L      
Sbjct: 1070 QVSHMVRLVDDLLDMNRIRRGKIQLKRARLELSPLVARAIEATRTVCGRAGVTLVAPPAT 1129

Query: 310  SLSAYFDEGE 319
            ++  + D   
Sbjct: 1130 AIEVHADADR 1139



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/380 (8%), Positives = 84/380 (22%), Gaps = 23/380 (6%)

Query: 97  EISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK--RQNTWYGKTTLWPIEG 154
             ++     +G      +G  L +V   L  D    +   ++         +  +    G
Sbjct: 70  LYNDPCKAIVGGRHPDALGQALREVWSELWDDIGPMLDRAMRENEGVYLESELFIMERHG 129

Query: 155 TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214
                    +  PI   +   +G    GI+  N  D       ++L      L       
Sbjct: 130 YREETYYTFSYSPIPEDDDGGAG----GILCANTDDTQRVIGERQLA-LLRELAARTADT 184

Query: 215 SSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQED 274
            + ++      +  +  P       +  L +           E                 
Sbjct: 185 RTWQQACERGAAAFAHDPQDLPFACIYLLRDDVVELAACSGIEAGHAAAPLRLERGADAL 244

Query: 275 FHTINL---NQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI 331
           +             +   G      + ++     R      A            V   P+
Sbjct: 245 WPVREALSCGDILVEDIAGRFDALPRAAWRVPPSRVAIVPMATAGPAAPSGALVVGLSPL 304

Query: 332 PFFVYSHGNLF----------YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
                 +               A+       + ++    E+    +             +
Sbjct: 305 RALDDGYRRFLGLVVGQLASGIASAQAYDEARMRAEALAELDRAKTAFFSNVSHELRTPL 364

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
             ++    +     A      ++ + E    +              +  + IE   +  R
Sbjct: 365 TLMLGPLEEALARPAHGLDAALREDLE---IVHRNGLRLRKLVGTMLDFSRIEAGRMQAR 421

Query: 442 INKRKMEIEVMQLCSILEAT 461
                +     +L S+  + 
Sbjct: 422 FEPMALASFTAELASVFRSA 441


>gi|209549672|ref|YP_002281589.1| integral membrane sensor signal transduction histidine kinase
           [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209535428|gb|ACI55363.1| integral membrane sensor signal transduction histidine kinase
           [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 511

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 102/249 (40%), Positives = 154/249 (61%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I+E +  K+    A++ AE+ +  KS FLA +SHE+RTPL AI+GFSEV+  +  GPL N
Sbjct: 238 IAELEVAKSMSDEARRRAEEANLAKSRFLASMSHELRTPLNAILGFSEVMSAEVMGPLAN 297

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
           P Y EYA  I RSG  +LD++N++LD+S+IE+GK  L  E +SL +   + I +VQL A 
Sbjct: 298 PTYKEYAGDIHRSGQHLLDLINEILDLSRIEAGKYELSEEAISLLDITEDCIGMVQLRAR 357

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
            K I I   F   +P I AD +S++Q+ LN+LSNA+ FTP GG+I +    T+     + 
Sbjct: 358 AKNIAISDQFERQLPAIWADEKSMRQVVLNLLSNAVKFTPQGGEIHVKVGWTAGGGQYIS 417

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           ++D G G+   E+   +  FGQ   + +   +GTGLGLP+ +A++  + G+F + S   +
Sbjct: 418 IKDNGPGIPEEEIPVVLSAFGQGSIAIKSAEQGTGLGLPIVQAILAKHDGQFLLKSKLRE 477

Query: 801 GTLIEIIFP 809
           GT +  I P
Sbjct: 478 GTEVIAILP 486


>gi|148975728|ref|ZP_01812559.1| hypothetical protein VSWAT3_26471 [Vibrionales bacterium SWAT-3]
 gi|145964801|gb|EDK30053.1| hypothetical protein VSWAT3_26471 [Vibrionales bacterium SWAT-3]
          Length = 839

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 84/248 (33%), Positives = 126/248 (50%), Gaps = 10/248 (4%)

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           Q   +L  AK+ A   +  KS FLA +SHEIRTPL  IIG +E++   +  P       E
Sbjct: 328 QHNQELVEAKEDAVSANKAKSAFLANMSHEIRTPLNGIIGMAEILSQSKLSPN----QQE 383

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
               I+ S + +L ++ND+LD+SKIESG + L      L EAV +++S++   A  K I 
Sbjct: 384 VLGDIESSSHSLLVLLNDILDLSKIESGNLMLSPHNADLREAVYDSVSVILSKAISKDIE 443

Query: 686 IRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS----NEEVILR 740
           +  +  +   P++  D   V+Q+  N+LSNAI FT S G I     +T       ++   
Sbjct: 444 LDVNIDSQTPPQLFFDEYRVRQVLTNLLSNAIKFT-SNGTITTDIAYTPMSMGRGKLECS 502

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V DTG+G+   +LE   +PF Q   S   +  GTGLGL + + +VD   G     S   +
Sbjct: 503 VSDTGIGIEPEKLESIFEPFTQEDGSITRQFGGTGLGLAICRQLVDLMGGYITARSVKGE 562

Query: 801 GTLIEIIF 808
           G+      
Sbjct: 563 GSTFTFCL 570


>gi|148550730|ref|YP_001260169.1| PAS/PAC sensor signal transduction histidine kinase [Sphingomonas
           wittichii RW1]
 gi|148503149|gb|ABQ71402.1| PAS/PAC sensor signal transduction histidine kinase [Sphingomonas
           wittichii RW1]
          Length = 500

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 78/420 (18%), Positives = 168/420 (40%), Gaps = 27/420 (6%)

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG 472
           +       A      +     +   + +      +      L SIL+   D + +I+  G
Sbjct: 92  VIAAVAFVAIGLAIALGGEWFQRARLASDEAAAGLASREAHLRSILDTVPDAMVVIDAAG 151

Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL--EKITL 530
           +I   + A  ++FG+  ++I  +   + + +   +  + YL        R+ +   ++ +
Sbjct: 152 LIRDFSPAAERMFGWKAQEIAGRNVRLLMPEPYRAAHDGYLDRYYQTGERRIIGKGRVVV 211

Query: 531 GSTKEEKLLSLRIIIKKLP--FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS--HKS 586
           G  ++     L + + ++       ++  + D++E +  + +L   +      S      
Sbjct: 212 GERRDGSTFPLELAVGEVQVNGQRFFTGFIRDLTERQHAEARLQELQSELVHVSRLTALG 271

Query: 587 DFLARVSHEIRTPLTAIIGF---SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
           +  + ++HE+  PL+AI  +   S+++  +      N R I+              I+  
Sbjct: 272 EMASALAHELNQPLSAIANYLKGSKMLLEREEDR--NDRVIDAVGRAAAEALRAGKIIRR 329

Query: 644 LLDI-SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702
           L D  ++ E+          SL + V EA +L  + A E  I ++  F+  I  +LAD  
Sbjct: 330 LRDFVARGET-----ERAVESLPKLVEEASALALVGAKEHGIRVQHDFSPEIDLVLADKV 384

Query: 703 SVKQIALNILSNAIHFTPSGGQ----IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
            ++Q+ LN++ NAI      G     + I+      +   + V DTG G+     ++  +
Sbjct: 385 QIQQVVLNLVRNAIDAMAGNGSGPRALTIAIAPADTDMARVTVADTGPGIAADVADRLFQ 444

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
           PF     +      G G+GL +++ +V+A+ G+ +  S    G +     P  D   P D
Sbjct: 445 PFITTKRT------GMGVGLSISRTIVEAHGGRIWAESHEGGGAVFGFTLPKADKEGPGD 498



 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/260 (8%), Positives = 57/260 (21%), Gaps = 6/260 (2%)

Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255
             + L +            +        +               V  +    A     + 
Sbjct: 7   ASRLLPRLALPAALGVALLAIAGGLAVRLLFADQLGARATFIFFVPGVVAASALSGLRVG 66

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
                   +                           L       +   +       +A  
Sbjct: 67  AMASLAGAAAGLWCDHLTGPIEEGSVIAAVAFVAIGLAIALGGEWFQRARLASDEAAAGL 126

Query: 316 DEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
              E      +D  P     + + G +   +P+   +  +K+ +    AG    LL    
Sbjct: 127 ASREAHLRSILDTVPDAMVVIDAAGLIRDFSPAAERMFGWKAQEI---AGRNVRLLMPEP 183

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
               +       Y++    I    R+   +    ++  +         Q        G  
Sbjct: 184 YRAAHDGYLDRYYQTGERRIIGKGRVVVGERRDGSTFPLEL--AVGEVQVNGQRFFTGFI 241

Query: 435 PEDVDTRINKRKMEIEVMQL 454
            +  + +  + +++    +L
Sbjct: 242 RDLTERQHAEARLQELQSEL 261



 Score = 46.6 bits (109), Expect = 0.016,   Method: Composition-based stats.
 Identities = 33/250 (13%), Positives = 69/250 (27%), Gaps = 17/250 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD-ILHIDPNNHIGDLLKRQNTWY--- 144
           IDA G +++ S    +  G  A ++ G  +  +         + ++    +         
Sbjct: 147 IDAAGLIRDFSPAAERMFGWKAQEIAGRNVRLLMPEPYRAAHDGYLDRYYQTGERRIIGK 206

Query: 145 -GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF-GIVHVNRVDNDPRALGKRLDK 202
                    +G+    P++LA   +     + +G R F G +          A   RL +
Sbjct: 207 GRVVVGERRDGSTF--PLELAVGEV-----QVNGQRFFTGFIRDLTERQHAEA---RLQE 256

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
             S L  + +  +  E           P   +    K S +        +    +     
Sbjct: 257 LQSELVHVSRLTALGEMASALAHELNQPLSAIANYLKGSKMLLEREEDRNDRVIDAVGRA 316

Query: 263 TSEE-SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
            +E   +               T++      +   + S   L       +    D    +
Sbjct: 317 AAEALRAGKIIRRLRDFVARGETERAVESLPKLVEEASALALVGAKEHGIRVQHDFSPEI 376

Query: 322 TPETVDKCPI 331
                DK  I
Sbjct: 377 DLVLADKVQI 386


>gi|254255329|ref|ZP_04948645.1| Signal transduction histidine kinase [Burkholderia dolosa AUO158]
 gi|124901066|gb|EAY71816.1| Signal transduction histidine kinase [Burkholderia dolosa AUO158]
          Length = 1020

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 126/693 (18%), Positives = 230/693 (33%), Gaps = 36/693 (5%)

Query: 140 QNTWYGKTTLWPIEGTNLYVPIDLAALP-----IYSRNREFSGFRGFGIVHVNRVDNDPR 194
           +       T W  +G     P++ A L       Y        +    +V  +    D R
Sbjct: 88  RRLVSASDTAWDPDGRASK-PVEDAFLAQQGYLRYEEPGTHHTYAATAVVDADHPVTDYR 146

Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254
            L    ++  +      +   +  +      S +     L   + +    E Y +    L
Sbjct: 147 PLLALSERLLASAMWRDRAQLAPSQVYVIGASGRYMAVSLYAMSGIGPPLERYRNLLTAL 206

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
             E   ++     +           +    +              + +   +   +L   
Sbjct: 207 PHEWPDVMALVRDADANPAAAPADIVWLPPRFDPVSGQLVLRLAHWTFDQRQRPVALIVQ 266

Query: 315 FDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
                      +D     F V  H       PS        S   +   G          
Sbjct: 267 TMRPSRFLNGILDADNGEFAVVDHEQRVLLTPSGNRSDDVMS--AVRAPGEPGARHATAV 324

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
               +  + V+      T              R  +  +  I           +    + 
Sbjct: 325 TQQFHDGRYVVRGPLPHTQWDVLFVYTRGMLLRAMAPRLIGIAAGTLFGVALLVGAIVLV 384

Query: 435 PEDVDTR--INKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVED 491
              V     +   ++        +++     G+A+I    G +L  N  + +  G     
Sbjct: 385 TRRVLDPSYLRATRLVDSERLNRTLIRTAPVGLALIAESTGAVLLRNEIMVRHDGGAEHA 444

Query: 492 ILRKPFTVFL-EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
           + R+ +       +    +   L     + L    E+ T      +  L + ++  K   
Sbjct: 445 LSRRIWQSLAGAPDANPTLRKRLIGSREITLPAGGERTT------DTHLLVNLVRVKYGG 498

Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
            S    T+ DI+  K  +  L  A++ A++ +  KS FLA +SHEIRTPL A+IG  E++
Sbjct: 499 ESALLCTVVDITARKLTEQSLDAARRAADQANRAKSVFLATMSHEIRTPLNAVIGNLELM 558

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
           K                +  D S   +L I+ND+LD+SK+E+G++ +   P      + +
Sbjct: 559 KRGPLA----DAQRRRLHAADTSSTALLHILNDVLDLSKVEAGQLRIDAVPFDCAALLDD 614

Query: 671 AISLVQLYANEKRILIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS- 728
                +  A  K + +    A    P  + D   ++QI  N+LSNAI FT +G  + ++ 
Sbjct: 615 VTESFRPLAERKGLSVICDVALEPSPYRIGDPIRIRQIVSNLLSNAIKFTDAG-HVRVAA 673

Query: 729 ---------TTHTSNEE--VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
                    T  T+     V + V DTG+G+           + Q  +S   R  GTGLG
Sbjct: 674 HAASDAAHGTGRTAGGAPVVEIVVADTGIGIPEAAQAAIFGLYRQADDSIHRRYGGTGLG 733

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           L L + ++DA  G   + S P  G+   +  PL
Sbjct: 734 LALCRRLLDAMSGDIAVSSAPGAGSTFRVRIPL 766


>gi|297569313|ref|YP_003690657.1| histidine kinase [Desulfurivibrio alkaliphilus AHT2]
 gi|296925228|gb|ADH86038.1| histidine kinase [Desulfurivibrio alkaliphilus AHT2]
          Length = 597

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 80/318 (25%), Positives = 144/318 (45%), Gaps = 11/318 (3%)

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT 557
              L       +     + ++    Q   +I +   +  +L+        +         
Sbjct: 122 AFLLHNTLLYALGEQDRQEMAAQEGQFRSQIEVLKRQHGRLIEDNYRQYSINREKEQEYA 181

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
               SE  ++  +L  A    E+ S  KS+FLA +SHE+RTP+ AI GF++++ +     
Sbjct: 182 RTLESEIARQTAELRKANARLEESSRLKSEFLANMSHELRTPMNAITGFAQLLADTSLDT 241

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
                  EY   I +S   +L ++ND+LD++KIE+G++ L      LDE +    ++  L
Sbjct: 242 T----QQEYCRTIRQSSATLLALINDILDLAKIEAGRLELEIVAFDLDELLESVAAMFSL 297

Query: 678 YANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIIST-----T 730
              EK I I+      +PR    D   ++Q+  N++ NA+ FT SGG ++++ +      
Sbjct: 298 SIREKGIAIQVRRDQGLPRAYLGDSHRLRQVLTNLVGNAVKFTESGGVELLVESVAPPEA 357

Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
               + +   VRD+G+G+  + LE   + F Q   S   R  GTGLGL + + +V+   G
Sbjct: 358 ARQEQWLRFVVRDSGIGIPPHRLEAIFEKFTQADGSTTRRFGGTGLGLAICRQLVELMGG 417

Query: 791 KFYIFSTPAKGTLIEIIF 808
           +  + S   +G+      
Sbjct: 418 RIEVESLEGQGSCFSFTI 435


>gi|168702739|ref|ZP_02735016.1| multi-sensor hybrid histidine kinase [Gemmata obscuriglobus UQM 2246]
          Length = 1573

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 107/780 (13%), Positives = 237/780 (30%), Gaps = 78/780 (10%)

Query: 87   WNIDAHGYLKEISEELPKTIGNYAFKMIGMR--LCDVSDILHIDPNNHIGDLL--KRQNT 142
            W++  +G     +E +    G+    + G      +       +        +  +   +
Sbjct: 667  WDMRTNGVW--WNEGVTTLFGHARHDVGGDAAWWYEHIHPDDRERVVTGVHAVIDRGGAS 724

Query: 143  WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
            W  +      +G   Y  +      I+   +     R  G +             +  ++
Sbjct: 725  WSDEYRFRKADGG--YATVLDRGHAIHEGGKTV---RLVGAMQDVTERRRAEEQLRDSEQ 779

Query: 203  KFSHLHEIKKGHSSVEKEKYDIFSQQ----------SPPPHLRMKNKVSSLTEYYAHKDD 252
            +F  L E       V +   D               +   H  +K+ V           +
Sbjct: 780  RFRSLFESMDEGYCVVEPVLDPAGAAVDYRYLLVNPALEAHTGLKDIVGRTAREIMPTHE 839

Query: 253  VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
                E Y  +          +    +           G   +       +    +     
Sbjct: 840  RHWIEGYARVAETGRPFRRTDRVADLGRWFDVSAFRVGPPGSRQVGVL-FTDISDRKRAE 898

Query: 313  AYFDEGENLTPETVDKCPI-PFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
            A   E +      VD+       V    G +         +T +   D +        + 
Sbjct: 899  AMLREKDERLQLLVDRARDYAVLVTDRDGRVIEWAGGAEGITGFAPADVLGRP--ADVIF 956

Query: 371  DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
                 +     + + L   +            ++ +     A   +     ++       
Sbjct: 957  TPADRAAGVPAREMELAAREGRAEDKRWH---VRKDGSEFFADGVM-VPLRDEDGALHGF 1012

Query: 431  NGIEPEDVDTRINK-------------RKMEIEVMQLCSILEATSDGIA------IINRE 471
              +  +    +  +              ++      L  I      G A      +++ +
Sbjct: 1013 GKVFRDATPRKRTEEGVQFLADASASLAELVDYQSTLQRIANLAVGGFADWCVVDLVDED 1072

Query: 472  GI-----ILSTNRA---VSKLFGYPVEDILRKPFTVFL---------------EQNTPSV 508
            G      + +   A    ++    P +          +               +  T   
Sbjct: 1073 GRRERLAVTAAEPADVSAARAADTPADPAGAAEVVPHVLRTGEPEVVTDLAEADPATAPQ 1132

Query: 509  MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568
                L ++ +L +R  +        +    ++      +  F         +++E     
Sbjct: 1133 GPERLEKLRALGVRSYMCVPLRSRGRVIGGMTFLSSSPRRRFGPDELRVAQNLAERVTVA 1192

Query: 569  NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
             + +   +  +++   K +FLA ++HE+R PL  +    ++++    G           N
Sbjct: 1193 IENAQLYRTLQEQDRRKDEFLATLAHELRNPLAPVRNGVQILRLSGVG----EAAGRTLN 1248

Query: 629  YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
             +DR    +  +V+DL+D++++ SGK+ L  + VSL   V  A+   +            
Sbjct: 1249 MMDRQLGHLTHLVDDLMDVARVSSGKVVLRNDRVSLKAVVDAAVETSRQAVEAAGHEFVL 1308

Query: 689  SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748
              A     + AD   + Q+  N+L+NA  +TP GG+I++S       + ++ V DTGVG+
Sbjct: 1309 RVAAEPLLLSADHTRLVQVLANLLNNAAKYTPQGGRIVLS-AQRDGGDAVVTVSDTGVGI 1367

Query: 749  TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEII 807
                L K  + F Q+  S +    G G+GL L K +V+ + G     S  P +G+   + 
Sbjct: 1368 PADMLPKVFELFAQVGTSIERSQGGLGIGLTLVKRLVEMHGGTVRAESPGPGRGSTFTVR 1427



 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 49/508 (9%), Positives = 122/508 (24%), Gaps = 20/508 (3%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTW-YGKTT 148
           D  G ++  +    +  G  A + +G  +  +     +     I D L R       +T 
Sbjct: 293 DLDGTIRSWNRGAERAFGYTAAEAVGRSITLLVPPERLGEERDILDRLGRGERVEQFETV 352

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +G    V + L   PI       +G     +                  +      
Sbjct: 353 RVRKDGR--RVDVALTVSPIRDAEGHITGASK--VARDVTAAKRAERTRAAALQAGEVGT 408

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS-LTEYYAHKDDVLKTEKYPLLTSEES 267
                 +       +  +        R    V   LT  +    D +  E    L +   
Sbjct: 409 YHWDVAADRITGDRNFAAIFGVLTDDRPAAPVGDFLTVIHPDDRDRVGAEIRRTLDTGAP 468

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL--SHRNHPSLSAYFDEGENLTPET 325
              E              +       +    S+  +     +                  
Sbjct: 469 FRSEYRVTGPAGERWLVARGTVERAADGGAVSWAGVVIDITDRKRAENDLAASRARLDYA 528

Query: 326 VDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
           V    I F+      ++   +              +     + T  D     D    +  
Sbjct: 529 VRASGIGFWYCDLPFDVLQWDERVKAHFWLPPDARV----TIDTFYDRIHPDDREPTRAA 584

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
           +                T+         +  I     ++       +G+  +  D R  +
Sbjct: 585 IERSIADRAG-YDVHYRTVDPGTGAEKWVRAIGGTYYDEAGAPKRFDGVTLDVTDQRRAE 643

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR--KPFTVFLE 502
             +     +   +  AT+D +   +     +  N  V+ LFG+   D+      +   + 
Sbjct: 644 AAVRESSDRFAIVARATNDAVWDWDMRTNGVWWNEGVTTLFGHARHDVGGDAAWWYEHIH 703

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMH 559
            +    +   +  ++                 +    ++      +            M 
Sbjct: 704 PDDRERVVTGVHAVIDRGGAS-WSDEYRFRKADGGYATVLDRGHAIHEGGKTVRLVGAMQ 762

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSD 587
           D++E ++ + +L  +++          +
Sbjct: 763 DVTERRRAEEQLRDSEQRFRSLFESMDE 790



 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 41/387 (10%), Positives = 109/387 (28%), Gaps = 18/387 (4%)

Query: 190 DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH 249
            +         +     L +      S  +    +         + ++    S  E    
Sbjct: 20  VDHRPENLTAREADLGDLGQHLVRAGSAAEALERVLQTDFAVILIEVELAGVSGFEVAKG 79

Query: 250 KDDVLKTEKYPL---LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
                ++   P+         +LP +E +    ++   +      L+       E     
Sbjct: 80  LRARDRSRHTPIIFISAGASGALPVEEAYALGAVDYLVEPIAPVVLRAKVSVFVELARRT 139

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
                +      +       D         + G + + NP    LT + + D        
Sbjct: 140 REARAADRLRLWQTALASIGDGV---VTTDAAGRVTFLNPVAEGLTGWAAADA-RGRPLT 195

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
                  + +      P +      T +  +     I  +      +        ++   
Sbjct: 196 EVFRIVNETTRKAVENPALRALQTGTIVGLANHTVLIARDGSE-RPIDDSASPIRDETGA 254

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
                 +  +  + +      EI   +L +I+E++ D I   + +G I S NR   + FG
Sbjct: 255 VAGAVLVFRDITERKKA----EIAQARLAAIVESSDDAIIGKDLDGTIRSWNRGAERAFG 310

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
           Y   + + +  T+ +           L  +      +  +  T+   K+ + + + + + 
Sbjct: 311 YTAAEAVGRSITLLVPPERLGEERDILDRL--GRGERVEQFETVRVRKDGRRVDVALTVS 368

Query: 547 KLPFSSCYSL----TMHDISEWKQEKN 569
            +  +  +         D++  K+ + 
Sbjct: 369 PIRDAEGHITGASKVARDVTAAKRAER 395



 Score =  123 bits (310), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 50/512 (9%), Positives = 132/512 (25%), Gaps = 23/512 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG----DLLKRQNTW- 143
            DA G +  ++       G  A    G  L +V  I++      +       L+      
Sbjct: 165 TDAAGRVTFLNPVAEGLTGWAAADARGRPLTEVFRIVNETTRKAVENPALRALQTGTIVG 224

Query: 144 -YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
               T L   +G+    PID +A PI       +G     +               RL  
Sbjct: 225 LANHTVLIARDGS--ERPIDDSASPIRDETGAVAGA--VLVFRDITERKKAEIAQARLAA 280

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
                 +   G       +      +    +   +    S+T     +    + +    L
Sbjct: 281 IVESSDDAIIGKDLDGTIRSWNRGAERAFGYTAAEAVGRSITLLVPPERLGEERDILDRL 340

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
              E     +      +  +         +++               + +   +      
Sbjct: 341 GRGERVEQFETVRVRKDGRRVDVALTVSPIRDAEGHITGASKVARDVTAAKRAERTRAAA 400

Query: 323 PETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
            +  +      +  +   +   + +F  +    + D      G    +  P   D    +
Sbjct: 401 LQAGEVGTYH-WDVAADRIT-GDRNFAAIFGVLTDDRPAAPVGDFLTVIHPDDRDRVGAE 458

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
              + R+  T     +         E    +      +       +   G+  +  D + 
Sbjct: 459 ---IRRTLDTGAPFRSEYRVTGPAGER--WLVARGTVERAADGGAVSWAGVVIDITDRKR 513

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE-DILRKPFTVFL 501
            +  +     +L   + A+  G    +    +L  +  V   F  P +  +    F   +
Sbjct: 514 AENDLAASRARLDYAVRASGIGFWYCDLPFDVLQWDERVKAHFWLPPDARVTIDTFYDRI 573

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLT 557
             +        +   ++      +   T+          +R I       +     +   
Sbjct: 574 HPDDREPTRAAIERSIADRAGYDVHYRTVDP-GTGAEKWVRAIGGTYYDEAGAPKRFDGV 632

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
             D+++ ++ +  +  +       +   +D +
Sbjct: 633 TLDVTDQRRAEAAVRESSDRFAIVARATNDAV 664


>gi|325686294|gb|EGD28333.1| phosphate regulon sensor histidine kinase protein PhoR
           [Lactobacillus delbrueckii subsp. lactis DSM 20072]
          Length = 552

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 83/376 (22%), Positives = 162/376 (43%), Gaps = 40/376 (10%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            ++     +L ++ +A  +G+ +I+ +  IL +N AV  L G    D L       +++N
Sbjct: 215 EQLHHREKELKTVTDAMLEGLILIDLDDQILLSNPAVVSLLGLHDTDPLPDDVKEIIDKN 274

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISE 563
           +       +                    +  + + +              S+ + D++E
Sbjct: 275 SRLAHAEGI------------------VERNGRNIQISASPITSRKILKGTSILVVDVTE 316

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
              E+                + +F A VSHE++TPL +I+G +E+++N     +     
Sbjct: 317 EYHEEQV--------------RREFTANVSHELKTPLQSIMGSAELLENHL---VKEEDR 359

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
             +   I  S   +L +++D++ +S ++  +       ++L   V+EA+  +Q  A+  R
Sbjct: 360 DSFYKKIHESSAQLLTLIDDIIRLSHLDENQ-RFEEIKLNLKSPVTEALEALQSSADRHR 418

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
           I + T+ ++    ILA+ R V +IA N++ N+I +    G+I I+       + IL+V D
Sbjct: 419 IKLETNLSDT--MILANFRLVYEIAYNLIDNSIRYNKEKGKIKITVK-EHRGQAILQVAD 475

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TG+G+      +  + F ++  S   +  GTGLGL + K  V    G   + S   KG+ 
Sbjct: 476 TGIGIPQEAQNRIFERFYRVDKSHSRKTGGTGLGLSIVKHAVQQCHGTIRLESELGKGST 535

Query: 804 IEIIFPLYDTSHPHDC 819
             +IFP        D 
Sbjct: 536 FTVIFPALPAGADDDS 551


>gi|209524386|ref|ZP_03272935.1| PAS/PAC sensor signal transduction histidine kinase [Arthrospira
           maxima CS-328]
 gi|209495177|gb|EDZ95483.1| PAS/PAC sensor signal transduction histidine kinase [Arthrospira
           maxima CS-328]
          Length = 866

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 106/802 (13%), Positives = 242/802 (30%), Gaps = 104/802 (12%)

Query: 82  TVRFTWNIDAHGYLKEISEELPKTIGN-YAFKMIGMRLCDV-SDILHIDPNNHIGDLLKR 139
                W  D +      + +  + +G     +++G    D+                   
Sbjct: 92  PQAVFWK-DCNSVYLGCNRQFAEKVGLQDPREIVGKTDDDLPWTPQEAKLYQEF-----D 145

Query: 140 QNTWYGKTTLWPIEGT-----NLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR 194
           +     K+    + GT        + ++   +P+ +      G  G          +D  
Sbjct: 146 RQVISSKSPQIKVRGTRHLVQGKEILVETTKIPLDNHQGNIVGVLGI-----LDDISDRL 200

Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP--PHLRMKNKVSSLTEYYAHKDD 252
              + L ++ + +     G +    E    +  ++           ++   T    +  D
Sbjct: 201 QQEELLKQRLAAIEASTDGIALQNSEGVFTYVNRAYLEMFGYSQAEEILGKTWQELYDGD 260

Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
            ++  +  +          + ++     ++     +F    + +K +   +      +  
Sbjct: 261 EIEYIRREVSPV----FAAENEWQGELRSRRQDGSFFIQEMSVTKSAAGVVCICRDVTER 316

Query: 313 AYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIA-GGLSTLL 370
              +    L  + V+       +     N FY NP+F  +   ++ ++     GG+S   
Sbjct: 317 KQAEATLMLYKQAVESSSDAIAMADAQWNHFYQNPAFSEMFGCETPEEFNQVFGGISGAY 376

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
             P++      + +    S                       +        +     +  
Sbjct: 377 TDPQIP-----RQIFAVISQGKNWVGEVEHRA---KNNRVFQVLLRASAIKDGRGNVLGA 428

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV- 489
                +    +  +  +      L    E    G   ++ +   L+ +  V ++ G    
Sbjct: 429 VASLNDITSRKKAEASLREITSDLQEAQELAHIGNWELDIDTGELTWSDEVFRILGLDQT 488

Query: 490 -EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
                 +            ++   L E  +       E   +        + ++      
Sbjct: 489 LGIPSVEQCLQCYHPEDRPLVEKALAETRNNGTTCQAEARIIKDENSVSYVHIKFKAILN 548

Query: 549 PFSSCY--SLTMHDISEWKQEKNKLSHAKKIAEKE----------------SSHKSDFLA 590
             +       T+ DI+E K+ +  L    +  EK                  S     +A
Sbjct: 549 HDNQIVSLFGTIMDITERKRAEIHLQQQTEKLEKALTKLKRTQTQLIQSEKMSGLGQMVA 608

Query: 591 RVSHEIRTPLTAIIGFSEVIKN-QRFGPLGNPRYIEY----------------------- 626
            V+HEI  P+  I+G    ++   +   L    Y +Y                       
Sbjct: 609 GVAHEINNPVGFIVGNVPHLEEYTQDLLLLIESYRQYYTEPPLAITELIEEIDLNFLITD 668

Query: 627 ----ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI----SLVQLY 678
                N I      + +IVN L   S++    +      + L + +   +    S ++  
Sbjct: 669 IPQLINSIQNGAKRIQEIVNSLQSFSRLNESAIK----EIDLHQGIDSTLMVLTSRLRPL 724

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF--------TPSGGQIIISTT 730
             E+ I++  ++  ++P++      + Q+ L+I +NAI          +     + I+T 
Sbjct: 725 PGEREIVVIKNY-GDLPKVECYAGQINQVFLHIFNNAIDALKSSECQQSAKEPTLTITTG 783

Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM-VDANM 789
            T N    +R+ D GVG+      +   PF          G+GTGLGL ++  + VD + 
Sbjct: 784 LTKNNLAFIRIADNGVGIPEELRSRIFDPFFTTKP----VGQGTGLGLSVSYQIVVDLHK 839

Query: 790 GKFYIFSTPAKGTLIEIIFPLY 811
           GK    S P  G+   I  P++
Sbjct: 840 GKLNCTSEPGVGSEFCIQIPIH 861



 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/135 (14%), Positives = 45/135 (33%), Gaps = 8/135 (5%)

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRKPFTVF-LEQNTPSVMNH 511
           L  +++     +   +   + L  NR  ++  G     +I+ K             +   
Sbjct: 84  LQMVIDYVPQAVFWKDCNSVYLGCNRQFAEKVGLQDPREIVGKTDDDLPWTPQEAKLYQE 143

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQE 567
           +  +++S    Q   + T     + K + +      L             + DIS+  Q+
Sbjct: 144 FDRQVISSKSPQIKVRGTRHLV-QGKEILVETTKIPLDNHQGNIVGVLGILDDISDRLQQ 202

Query: 568 KNKLSHAKKIAEKES 582
           + +L   +  A + S
Sbjct: 203 E-ELLKQRLAAIEAS 216


>gi|170287881|ref|YP_001738119.1| histidine kinase [Thermotoga sp. RQ2]
 gi|281411517|ref|YP_003345596.1| histidine kinase [Thermotoga naphthophila RKU-10]
 gi|170175384|gb|ACB08436.1| histidine kinase [Thermotoga sp. RQ2]
 gi|281372620|gb|ADA66182.1| histidine kinase [Thermotoga naphthophila RKU-10]
          Length = 492

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 79/410 (19%), Positives = 166/410 (40%), Gaps = 37/410 (9%)

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
           +      + +   P  +  +  + +         ++     R++E     +  IL    +
Sbjct: 104 RMFGSLIVLLNHQPSMEETEIFKVLSFLSAI--VLENIKLYRELEETYNYVNVILNGLPE 161

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
           GI +    G I   N    +                               E +SL  ++
Sbjct: 162 GIFVY-SNGEIKFQNEKFKE---------------ENFPDEVLKKAISLSEEAISLRTQR 205

Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
             E I       E+  S+  I   L         + +++E K+ +          ++   
Sbjct: 206 VGEVI-----SGEEFFSITSIPLALGSEIQALTIVENVTESKELER--------LKRIDR 252

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
            K++F+A +SHE+RTPLTAI  ++E + N     L      E+   I    N + +++N+
Sbjct: 253 MKTEFIANISHELRTPLTAIKAYAETVYNS-LEELDLSTLKEFLEVIIDQSNHLENLLNE 311

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLR 702
           LLD S++E   + ++ E V L + V  A++ ++ +A+   + +        P     D  
Sbjct: 312 LLDFSRLERKSLQINREKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPCPVEAYIDPT 371

Query: 703 SVKQIALNILSNAIHFTPSGGQ---IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKP 759
            ++Q+ LN+L N + ++        + +      +  V++ V D G+G+ ++  ++  + 
Sbjct: 372 RIRQVLLNLLDNGVKYSKKDAPDKYVKVILD-EKDGGVLIIVEDNGIGIPDHAKDRIFEQ 430

Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           F ++ +S      GTGLGL + K +V+ + G+ ++ S   KG+   +  P
Sbjct: 431 FYRVDSSLTYEVPGTGLGLAITKEIVELHGGRIWVESEVGKGSRFFVWIP 480


>gi|281204163|gb|EFA78359.1| histidine kinase [Polysphondylium pallidum PN500]
          Length = 1047

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 91/372 (24%), Positives = 167/372 (44%), Gaps = 29/372 (7%)

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
            +  ++  +   +SD + I  ++G+I+  N     +F    E IL K        +  S 
Sbjct: 48  EKEQRIRCLFNISSDALIIH-KDGVIMDANTTFETMFQVKTESILYK------VPSLISE 100

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL-PFSSCYSLTMHDISEWKQE 567
                 ++   +        T G     +  ++ + ++ +   S    +     +  K++
Sbjct: 101 FLPDFEKLTHNNHS----FETYGINSLGENFAVLVKVEHVKHNSDDIDIISVIDTSAKKK 156

Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
             +   A + AE  +  K +FL  VSHE+RTP+  I+   E+I+N       N    ++ 
Sbjct: 157 LIEADLALRKAEAINEAKINFLTTVSHEVRTPINGILASVEIIENTVL----NDTQRDFL 212

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
           + I  SG  +LD++ D+LD SKIE+GKM L     ++   + EA+++V   A E+ + I 
Sbjct: 213 SCIKDSGCYLLDLITDILDFSKIEAGKMELQKVEFNMITMLEEAMNIVYTTAQERDLEIL 272

Query: 688 TSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----------- 735
            +   ++P ++  D   VKQ+ LN LSNAI FTP G  +I+      +            
Sbjct: 273 LTVEESVPIVVIGDPYRVKQVLLNFLSNAIKFTPKG-HVIVRVKLDKSNPNQDSSSLVDY 331

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            V   V D+G+G+   +++     F Q+  + Q + +GTGLGL ++K +     G+  + 
Sbjct: 332 TVCFEVEDSGIGIKEEQMDSLFTAFLQLDGTSQRKNQGTGLGLSISKRLCQLMGGEITVR 391

Query: 796 STPAKGTLIEII 807
           S    G+     
Sbjct: 392 SKFGNGSTFAFT 403


>gi|261409395|ref|YP_003245636.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           sp. Y412MC10]
 gi|261285858|gb|ACX67829.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           sp. Y412MC10]
          Length = 357

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 84/359 (23%), Positives = 162/359 (45%), Gaps = 20/359 (5%)

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
             +E    G   I+ EG I+  N A   + GY  ++ L  P+  ++     +     + +
Sbjct: 14  QAIEVAPIGTVFIDSEGSIIRINPAACTMLGYEEDECLHHPYNDWVYPEDVNKDREMMEK 73

Query: 516 ILSLDLRQT-LEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLS 572
             +  +    +EK  +    + + +S R+   +        Y   + DI++ K+  ++  
Sbjct: 74  FKTGRISSLQMEKRLIHKQGDIRWVSCRLSTARSREGRALGYVAHLTDITDMKRAADQEE 133

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
                ++K S       A ++HEIR P+T+I GF ++I++         R  EY + I  
Sbjct: 134 KRLIQSDKLSMA-GQLAAGIAHEIRNPMTSIKGFVQLIRSGAG------RKDEYFDIISS 186

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
               +  IV++LL ++K +S    + FE   + + + + I+L+   A    + I T F  
Sbjct: 187 EIERIELIVSELLFLAKPQS----VKFERADIRQLLEQVITLLNTQAIIHNVEIITDFGE 242

Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752
               +  D+  +KQ+ +N + NA+   P GG++ I     S+E V +   D G G+    
Sbjct: 243 QEANVDGDVNHLKQVFINFIKNAVESMPDGGELTIRLERGSDETVAIHFTDNGCGIPESI 302

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
           L +  +PF         + +G GLG  ++K M++ + G+ Y+ S   +GT I ++ PL 
Sbjct: 303 LSRLGEPFFTT------KEKGNGLGFMISKKMIEDHRGQVYVTSKLQEGTTITVMLPLS 355



 Score = 60.0 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 40/130 (30%), Gaps = 5/130 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN--TWYGK 146
           ID+ G +  I+      +G    + +     D      ++ +  + +  K     +   +
Sbjct: 26  IDSEGSIIRINPAACTMLGYEEDECLHHPYNDWVYPEDVNKDREMMEKFKTGRISSLQME 85

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI-VHVNRVDNDPRALGKRLDKKFS 205
             L   +G   +V   L+     SR     G+      +   +   D          K S
Sbjct: 86  KRLIHKQGDIRWVSCRLSTA--RSREGRALGYVAHLTDITDMKRAADQEEKRLIQSDKLS 143

Query: 206 HLHEIKKGHS 215
              ++  G +
Sbjct: 144 MAGQLAAGIA 153



 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/136 (11%), Positives = 41/136 (30%), Gaps = 10/136 (7%)

Query: 320 NLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
           +   + ++  PI   F+ S G++   NP+   +  Y+  + +                D 
Sbjct: 10  DFMVQAIEVAPIGTVFIDSEGSIIRINPAACTMLGYEEDECLHHPYNDWVY-----PEDV 64

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
           N  + +M         +       I    +    ++       ++    +       +  
Sbjct: 65  NKDREMMEKFKTGRISSLQMEKRLIHKQGD-IRWVSCRLSTARSREGRALGYVAHLTDIT 123

Query: 439 DTRINKRKMEIEVMQL 454
           D +   R  + E  +L
Sbjct: 124 DMK---RAADQEEKRL 136


>gi|152975646|ref|YP_001375163.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           cereus subsp. cytotoxis NVH 391-98]
 gi|152024398|gb|ABS22168.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           cytotoxicus NVH 391-98]
          Length = 612

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 93/499 (18%), Positives = 177/499 (35%), Gaps = 33/499 (6%)

Query: 317 EGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
           + +      +   P+    +   G     N     +T Y + + I     L  L      
Sbjct: 131 KEKEQLYTILQNMPVMVDALDLDGEFILWNRECKSVTGYTAEEMIGNPKALELLYPDANY 190

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
                 K  +  R  R        ++    N E    M      +            +  
Sbjct: 191 RRQIQEKFAVYGRDFR-----DWEMNLTCKNGEQKTIMWSNISNRFPVSG--FSYWAVGV 243

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
           +    +  + +++ +  +L  I +A  D   +   +G I+         F  P ED + K
Sbjct: 244 DITHLKKIEAQLKEQTSELELIFQALPDLCFLTEADGTIIDYKAGSPTKFYVPAEDFMGK 303

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555
            F   L           + ++   +    +E            +S       L       
Sbjct: 304 KFYEDLPSPVAQQFQEAIDQVQKTESMVIVEYSLSLK----GSISFFEARCFLLLKDRIM 359

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
           + + DI+E K+ +  L+ +  +A           A V+HE+R PLT I GF +       
Sbjct: 360 IIVRDITERKKTEELLNKSDTLA-----AIGQLAAGVAHEVRNPLTVIKGFIQ------L 408

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
             +      +Y + +      +  I+++ L I+K +     +  E  +L   +   +SL+
Sbjct: 409 FQINKEDQGKYFDLMLSEIERIESILHEFLSIAKTD----IIPTEKKNLYSIMKNVVSLI 464

Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
              A    I I     +    I      +KQ+ +NIL N+I   P GG+I I        
Sbjct: 465 NTKAIMTNIQIEIISESKELVIECCENQLKQVFINILQNSIEAMPDGGKIFIHMKTNRIN 524

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
           EVI+ + D G+G+    +++  +PF         + +GTG+GL L+  +++ + G+  I 
Sbjct: 525 EVIIDLVDEGIGIPEERIKRLGEPFY------STKEKGTGIGLMLSYKIIEQHQGRISIM 578

Query: 796 STPAKGTLIEIIFPLYDTS 814
           S    GT + I  P++   
Sbjct: 579 SKVGVGTSVTIYLPMFQQE 597


>gi|255011870|ref|ZP_05283996.1| putative two-component system sensor histidine kinase/response
           regulator fusion protein [Bacteroides fragilis 3_1_12]
          Length = 629

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 109/487 (22%), Positives = 180/487 (36%), Gaps = 20/487 (4%)

Query: 325 TVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
            +    I F+ Y    G   +    +  +   K    +            P   D  + +
Sbjct: 17  VLAGHQIAFWEYDIPTGECNF-TDEYFSILGLKEAGIVFREINDFYRFAHPD--DVTSYQ 73

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
                  +     +   +  +  + E           K N+   +               
Sbjct: 74  TAFNRMLESDTKTSQIVVRCLGEHGETIWLEDNFIAYKKNKENGSDKIIAYTANITSRCE 133

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            + ++     +   I+EA  + I I +    I     A      +PVE +          
Sbjct: 134 KEVQIRQLEERNRKIIEALPEFIFIFDDNFFITDVLMAPDTELLHPVEVLKGADGRSIYS 193

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
                +    + E L     + +E      T        RI        +     +HDI 
Sbjct: 194 AEVSELFISSIRECLKSGKLKEIEYPLDVETG-RHYFQARIAP---FEGNKVLALIHDIG 249

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  +   +L  AK+ AE+    KS FLA +SHEIRTPL AI+GFSE+I            
Sbjct: 250 DRIRRSQELLDAKRRAEEADRMKSLFLANMSHEIRTPLNAIVGFSEIIA----LTEDEKE 305

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             EY   I ++ NL+L ++ND+LD+S+IESGK  +H +   +     E   + +L   +K
Sbjct: 306 KEEYLGIIQQNSNLLLQLINDILDLSRIESGKSEMHCQLTEISGLADEVYKVHRLKM-KK 364

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
            + +     ++   I  D   V Q+  N LSNAI  T  G  I           V   V 
Sbjct: 365 GVELNVIRPSDEIWISTDRNRVTQVLFNFLSNAIKNTIEGS-ITFGLVKEEE-WVKFYVA 422

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG G++  +L      F ++        +GTGLGLP+ K++V+   G+  + S   KG+
Sbjct: 423 DTGCGISKEKLPLIFTRFEKL----NDFVQGTGLGLPICKSIVERLGGRIEVESELEKGS 478

Query: 803 LIEIIFP 809
              +  P
Sbjct: 479 TFTLYLP 485


>gi|325983361|ref|YP_004295763.1| PAS/PAC sensor signal transduction histidine kinase [Nitrosomonas
           sp. AL212]
 gi|325532880|gb|ADZ27601.1| PAS/PAC sensor signal transduction histidine kinase [Nitrosomonas
           sp. AL212]
          Length = 504

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 80/463 (17%), Positives = 184/463 (39%), Gaps = 23/463 (4%)

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
           ++      S LL++   S++   K   L     T     +    +          T   +
Sbjct: 54  EVGKDFECSHLLESTYYSESEKEKMRALIARVTTHKEEQSEEFLVNMPDGRVKWHTTTLY 113

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
              +   + +   G+       + N+ +++    ++ S+ E T+  + I + E  I+  N
Sbjct: 114 PMRDTGGDIIGLYGVLQNISARKKNELELQ----RMASVAEKTNGIVMITDPERKIIWIN 169

Query: 479 RAVSKLFGYPVEDILRKPFTVFLE--QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
            +  ++ GY  E+++      FL+  + + + ++     + S           L  TK  
Sbjct: 170 HSFEEILGYKAEEVMGIDPAAFLQGTETSRATIHEIARSLKSTGA---FSGEILNYTKSG 226

Query: 537 KLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
           + + L + I  +         Y    +DI+  K  + +L  A +   + +  K+ F+   
Sbjct: 227 EKIWLYLNIAAVHDDLGKLINYVAVENDITLIKMAEQRLQKAMEKERELNRFKTQFVNLA 286

Query: 593 SHEIRTPLTAIIGFSE----VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
           SH+ RTPL  I    +     +++   G      + ++   +      + +++ ++LDI 
Sbjct: 287 SHQFRTPLATIRSSVDLLDLKMESAHLGADFIALFRKHKAIMAEETTRMTELMENILDIG 346

Query: 649 KIESGKMNLHFEPVSLDEAVSE-AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707
           +I+ GK+ L  + VS  + +     +  +    ++++  R +  + I  I  D   ++ +
Sbjct: 347 RIDEGKIELSKKDVSFKQFMDTFVAANAEPNGQQRKLDYRFNAPDRI--ISMDEILLRNV 404

Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
             NI+SNA  ++       ++ +   +    + +RD G+G+   +     + F +   S 
Sbjct: 405 LRNIVSNAFKYSEQKPSPNLNVSFQDD-TFFITLRDQGIGIPEKDQPFLFQSFFRA--SN 461

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
                G+GLGL +AK ++  + G     S    G  + I  P+
Sbjct: 462 AKIFPGSGLGLMIAKKLIVLHGGDISFESQLNNGCTVTIQLPI 504



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 19/166 (11%), Positives = 49/166 (29%), Gaps = 11/166 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN--HIGDLLKRQNTWYGK 146
            D    +  I+    + +G  A +++G+                  I   LK    + G+
Sbjct: 159 TDPERKIIWINHSFEEILGYKAEEVMGIDPAAFLQGTETSRATIHEIARSLKSTGAFSGE 218

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
              +   G    + + L    ++    +   +    + +   +        ++  +K   
Sbjct: 219 ILNYTKSGE--KIWLYLNIAAVHDDLGKLINY--VAVENDITLIKMAEQRLQKAMEKERE 274

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD 252
           L+  K    ++          ++P   +R    +  L    AH   
Sbjct: 275 LNRFKTQFVNLASH-----QFRTPLATIRSSVDLLDLKMESAHLGA 315


>gi|154151351|ref|YP_001404969.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus
           Methanoregula boonei 6A8]
 gi|153999903|gb|ABS56326.1| PAS/PAC sensor signal transduction histidine kinase [Methanoregula
           boonei 6A8]
          Length = 488

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 87/492 (17%), Positives = 179/492 (36%), Gaps = 36/492 (7%)

Query: 338 HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397
            G +   NP+      Y       +  G    L           + V   R + +  +  
Sbjct: 8   TGTILDVNPAASAFYGYPRDVLCTMKIGEINQLSP---------EEVARLRREISEGSLQ 58

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
             +   + +  +   +                   I  +  D +  +  +     +L  +
Sbjct: 59  YFVAPHRISDGSVRTVEIHSSPI--SVGSRQYLFSIIHDITDRKKAEEALRENEERLRLV 116

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF-LEQNTPSVMNHYLTEI 516
            +++ D I   +R G   S NR + +      + I+ K        +      +   + +
Sbjct: 117 NDSSKDSIYSYDRAGRFTSANRKLCENMHMRPDQIIGKTHEELGFPREICREWDALHSRV 176

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS----LTMHDISEWKQEKNKLS 572
            + D+   L   T     +  +    +++  +  S+           DI+E K  + +  
Sbjct: 177 YTTDIS--LTAETKTPMPDGAVHDYEVVLNPIHDSTGAIMGISGITRDITERKAIEAERE 234

Query: 573 HAKKI-------AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
              +         E++++    F   VSH++++PL  I GF+  +  +            
Sbjct: 235 RLARQREALITDLEQKNAELERFTYTVSHDLKSPLITIRGFA-GLVEEDIRNNDTAAVKR 293

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
             + ID +   +  ++ DLL++S+I  G++    E VS  E   EAI L+   A  K+  
Sbjct: 294 DLDRIDAATEKMEMLLKDLLNLSRI--GRIVNPPENVSFTEIAQEAIELL--NAPLKKRE 349

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT-HTSNEEVILRVRDT 744
           +  +   ++P +  D   V+++  N++ NAI F        I    H      +  +RD 
Sbjct: 350 VTVTIYPDMPVVSVDRGRVREVVTNLVENAIKFMGDQQHPEIHIGVHEDGNRPVFFIRDN 409

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTL 803
           G+G+     E+    F ++   +    EG+G GL + K +++ + G   + S  P KGT 
Sbjct: 410 GIGIDPRYHERIFNLFEKLDVLK----EGSGAGLAIVKRIIEVHGGTIRVESEGPGKGTT 465

Query: 804 IEIIFPLYDTSH 815
                PL  T+ 
Sbjct: 466 FLFTLPLALTAE 477



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/185 (11%), Positives = 51/185 (27%), Gaps = 8/185 (4%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            ++ D  G     + +L + +     ++IG    ++     I       D L  +     
Sbjct: 124 IYSYDRAGRFTSANRKLCENMHMRPDQIIGKTHEELGFPREICRE---WDALHSRVYTTD 180

Query: 146 KTTLWPIEG---TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
            +     +           ++   PI+       G  G  I           A  +RL +
Sbjct: 181 ISLTAETKTPMPDGAVHDYEVVLNPIHDSTGAIMGISG--ITRDITERKAIEAERERLAR 238

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
           +   L    +  ++  +      S     P + ++     + E   + D          +
Sbjct: 239 QREALITDLEQKNAELERFTYTVSHDLKSPLITIRGFAGLVEEDIRNNDTAAVKRDLDRI 298

Query: 263 TSEES 267
            +   
Sbjct: 299 DAATE 303



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/242 (7%), Positives = 68/242 (28%), Gaps = 12/242 (4%)

Query: 93  GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPI 152
           G + +++       G     +  M++ +++  L  +    +   +   +  Y        
Sbjct: 9   GTILDVNPAASAFYGYPRDVLCTMKIGEIN-QLSPEEVARLRREISEGSLQYFVAPHRIS 67

Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212
           +G+     +++ + PI   +R++     F I+H            +  +++   +++  K
Sbjct: 68  DGS--VRTVEIHSSPISVGSRQYL----FSIIHDITDRKKAEEALRENEERLRLVNDSSK 121

Query: 213 GHSSVEKEKYDIFSQQS--PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT---SEES 267
                        S             +++   T         +  E   L +   + + 
Sbjct: 122 DSIYSYDRAGRFTSANRKLCENMHMRPDQIIGKTHEELGFPREICREWDALHSRVYTTDI 181

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
           SL  +      +   +  +     + +++             +     +          +
Sbjct: 182 SLTAETKTPMPDGAVHDYEVVLNPIHDSTGAIMGISGITRDITERKAIEAERERLARQRE 241

Query: 328 KC 329
             
Sbjct: 242 AL 243


>gi|92115866|ref|YP_575595.1| PAS/PAC sensor hybrid histidine kinase [Nitrobacter hamburgensis
           X14]
 gi|91798760|gb|ABE61135.1| PAS/PAC sensor hybrid histidine kinase [Nitrobacter hamburgensis
           X14]
          Length = 941

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 105/781 (13%), Positives = 226/781 (28%), Gaps = 70/781 (8%)

Query: 81  RTVRFTWNIDAHGYLKEISEELPKTIGN-YAFKMIGMRLCDVSDILHIDPNNHIGDLLKR 139
             +   W  D    ++  ++   +T+G       +G R  D    +       I  ++  
Sbjct: 55  HPMLIWWGPDL---IQFYNDGFRQTLGPERHPGALGERGRDCWGEVWDIVGPQIEHVMAG 111

Query: 140 QNTWYGKTTLWPIE--GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG 197
           +   + +  L P+   G    V       PI   +    G     +      ++  +   
Sbjct: 112 RGATWHEDQLVPVTRHGRLEQVYWTYGFSPI-DEDHGVGGV--LVVCRDVTREHLAKVAL 168

Query: 198 KRLDKKFSHL--------HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH 249
           +  + + + +         E+        ++  +       PP    ++    L   +  
Sbjct: 169 QERETELARVQAIGRIGGLEVDLHTGHRSRKSPEYLKIHGLPPEAVNESHEDWLRRVHPD 228

Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDF-HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
              V + +    +   +     +       +             ++   ++         
Sbjct: 229 DRAVAEGQFIDAVRGGDREYAVRYRIIRPSDGETRWISARSVIERDADGKAIRLFGAHTD 288

Query: 309 PS----LSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIA 363
            +          + E       +  P   +     G L + N         K  + +   
Sbjct: 289 ITDQVEAVRAIRQREEEFRALAEALPHHVWTAKPDGELNWCNTRVYDYVGAKPDELVGND 348

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
                  +     D+ +        +  T          ++    +            ++
Sbjct: 349 ------WNKVVHPDDASAAAAAWTHAVATGDPYEIE-FRLRGADGSYHWFLARAVPARDE 401

Query: 424 FPENMPQNGIEPEDVDTRINKRKM-----------EIEVMQLCSILEATSDGIAIINREG 472
                   G   +  D ++   K+           E +  +   I   + D + + + +G
Sbjct: 402 DGRITRWIGTNTDVHDQKLFAGKLAELNATLAERVEEKTRERDRIWNVSQDLLLVTDHDG 461

Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
           I  S N A ++  G+    +L +        +        +  +       T+       
Sbjct: 462 ICRSVNPAWTRTLGWSEAVLLGRTAEWIEHPDDIIKTRVEVRRLARGKA--TVRFENRLR 519

Query: 533 TKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES--SHKSDFLA 590
            K+     L          +       DI+  K    +L  A++   +            
Sbjct: 520 HKDGSYRWLSWTAVP--DQNLIYAVARDITAEKAATERLRAAEEALRQSQKMEAVGQLTG 577

Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650
            ++H+    LT I+G  + +   R       R   Y      S N    + + LL  ++ 
Sbjct: 578 GIAHDFNNLLTGIVGSLD-LMQTRLNQGRTDRAGRYIEAAMASANRAAALTHRLLAFAR- 635

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710
              +  L  +PV  +  V     L++    E  I +  + +  + + L D   ++   LN
Sbjct: 636 ---RQPLVPKPVDANHLVLSLEDLLRRTIGEA-IDLEIAPSGRLWQTLCDPNQLESALLN 691

Query: 711 ILSNAIHFTPSGGQIIIST-------------THTSNEEVILRVRDTGVGMTNYELEKAM 757
           +  NA    P GG++ I+T                  + V + V DTG GMT     +A 
Sbjct: 692 LAINARDAMPGGGKLAIATANMTVGAADAGSSAVRPGDYVCITVTDTGTGMTAEVAARAF 751

Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
            PF          G+GTGLGL +       + G     + P +GT I +  P +D     
Sbjct: 752 DPFFTTKP----IGQGTGLGLSMIYGFARQSNGHIAFDTAPGRGTSIRLCLPRHDDVAEA 807

Query: 818 D 818
           D
Sbjct: 808 D 808


>gi|322420676|ref|YP_004199899.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
 gi|320127063|gb|ADW14623.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
          Length = 815

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 90/533 (16%), Positives = 178/533 (33%), Gaps = 50/533 (9%)

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
                    + +    +    +   V +   +  AN        +  +  +    G ++ 
Sbjct: 4   RFRDLSIRRKLIAMLLLTNAVVLALVSAAFVVNEANR--FRSEMHTELSALAQIIGNNSS 61

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
                     A + +   R+     +A   L            +       ++       
Sbjct: 62  AAVAFNDRQAAAETLSALRAKPYIRSAFIMLQD-------RTVLARYLAPGSDLQRLPFT 114

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQL----------CSILEATSDGIAIINREGIILSTNR 479
            +  +   +D    +  ++     L            +L+    G  ++  +     T+R
Sbjct: 115 ADAGDRPRIDQERFRATLQHSRSPLAIRDDIYGVYQILLDGQQIGTVVLQSDSR-EFTDR 173

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
                F      +       FL       ++  +T +  +    + EK      +++   
Sbjct: 174 LARFFFLVAGVMLSALLLAYFLASRLQRFISAPITHLAQVIKAVSAEKTYSVRAQKQGND 233

Query: 540 SLRIIIKKLPFSSCYSLTMHDIS------------EWKQEK------------NKLSHAK 575
            L   + +        +   D              + +  +             +L  +K
Sbjct: 234 EL-GTLIEGFNDMLVQIQQRDEKLEAHRQELEAEVQRRTAELSAANCELNQTVAELRVSK 292

Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
           + AE  S  KS FLA +SHEIRTP+  ++G   V+               +A  +  SG 
Sbjct: 293 EAAEAASLAKSQFLANMSHEIRTPMNGVLGMVSVLLESGLAG----EQRRFAEAVRNSGE 348

Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695
            +L I+ND+LD SKIE+G+M L   P  L + +   + +    A  K + +       +P
Sbjct: 349 SLLSIINDILDFSKIEAGRMELEPAPFDLQDLLGGVLEMFAAGAQRKGVTVSLQLDPALP 408

Query: 696 R-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELE 754
           R +  D   ++QI +N+L NA+ FT  G   + +        +   V DTG+G+      
Sbjct: 409 RYVEGDPVRLRQILVNLLGNAVKFTSRGSVQLKAAALAGEGWLRFEVADTGIGIRPEAQA 468

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
              + F Q   S      GTGLGL +++ + +   G+  + S    G+     
Sbjct: 469 HIFESFSQADYSTTRTYGGTGLGLAISRQLAELMGGELGLQSEYGVGSAFWFS 521


>gi|225568760|ref|ZP_03777785.1| hypothetical protein CLOHYLEM_04839 [Clostridium hylemonae DSM
           15053]
 gi|225162259|gb|EEG74878.1| hypothetical protein CLOHYLEM_04839 [Clostridium hylemonae DSM
           15053]
          Length = 806

 Score =  286 bits (731), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 101/501 (20%), Positives = 181/501 (36%), Gaps = 66/501 (13%)

Query: 345 NPSFLLLTKY-KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403
           N S+   T +   ++          +L A +       K +     D +   A      I
Sbjct: 167 NRSYAEKTVHPDDLETFNAHFSREAMLHAFEHGRKRITKRLRRLSPDGSYRMAEFAAARI 226

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
               +    + F                       +  + ++++ +E+ QL +  +A   
Sbjct: 227 GREEDCWCVLVFHDVH-------------------EEFLMEQQLNVEISQLATAAKAAYQ 267

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILR----KPFTVFLEQNTPSVMNHYLTEILSL 519
            +  +N              +  Y    + R      F   ++    +V   Y +E +  
Sbjct: 268 MLIAVNLTQN-------TYHMLEYERSQVKRPEDTGCFDDLIKFELDTVHPDYRSEFIGK 320

Query: 520 -----------DLRQTLEKITLGSTKEEKLLSLRIIIKKLP----FSSCYSLTMHDISEW 564
                         + +         +         + ++               +I E 
Sbjct: 321 FRRSALIDTYLGGERIVSMEVPHLGADGVYHWNFTQVVRVESPHTDDLIEITLSRNIDEE 380

Query: 565 KQEKNK-----------LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
           ++ + +           L  A + AE+    KSDFL+R+SH+IRTP+ AIIG +E+    
Sbjct: 381 RRIQEETIEKERRTKQILEEALEKAERTGQAKSDFLSRMSHDIRTPMNAIIGMTELAL-- 438

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
                   +  EY   I  SG  +L +VN++LD+SKIESG   L  +   L E V E   
Sbjct: 439 -MNTGNEEKIKEYLKTIAGSGERLLSLVNEVLDVSKIESGTFELAEKEADLCELVDEVAE 497

Query: 674 LVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT-- 730
           + ++   +            I  R+LAD   + QI +N+L+NA  +T  GG + +S    
Sbjct: 498 MFRVTTEKMHQTFVVHVEKEIHARVLADAGRINQILVNVLANASKYTEEGGMLSLSLREL 557

Query: 731 -HTSN--EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
               N        V D G+GM    +E   +PF +  +S+  +  GTGLG+ + + +V  
Sbjct: 558 KKEENQVGTYQFTVEDNGIGMKPEYVEHIFEPFSRADDSRISKIAGTGLGMTIVRNLVSM 617

Query: 788 NMGKFYIFSTPAKGTLIEIIF 808
             G   + S   KG+   I  
Sbjct: 618 MDGDIQVESEYGKGSKFIITL 638


>gi|119900236|ref|YP_935449.1| putative two component sensor protein [Azoarcus sp. BH72]
 gi|119672649|emb|CAL96563.1| putative two component sensor protein [Azoarcus sp. BH72]
          Length = 852

 Score =  286 bits (731), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 85/251 (33%), Positives = 132/251 (52%), Gaps = 7/251 (2%)

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
            +L  A++ AE  S  KSDF+A +SHE+RTPL  I+GF+E+I++       N    ++A+
Sbjct: 604 QRLEDARRQAEDNSRMKSDFVASMSHELRTPLNGILGFAELIRDDA----PNDEVRDHAD 659

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I +SG  +L +VND+LDI+KIE+G M+L      L   + +  +L    A +K +   T
Sbjct: 660 TIYQSGEHLLSLVNDVLDIAKIEAGHMSLESVAFDLPALLQQVANLHGTMAQQKGLAFAT 719

Query: 689 SFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747
            FA  +P  +  D   ++Q+  N+L+NAI FTP+G ++ +    T  + +I+ VRDTG G
Sbjct: 720 EFAPGLPATLAGDPTRLRQVINNLLNNAIKFTPAG-EVKL-LARTEADRLIVGVRDTGPG 777

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           +           F Q          GTGLGL L + +V    G   + S P +G   E  
Sbjct: 778 IAAEMQPVIFDRFRQASTFITREHGGTGLGLALVREVVALMGGAVRLESAPGEGAYFEFW 837

Query: 808 FPLYDTSHPHD 818
            PL   + P +
Sbjct: 838 IPLVSPAAPTE 848


>gi|78223125|ref|YP_384872.1| PAS/PAC sensor hybrid histidine kinase [Geobacter metallireducens
           GS-15]
 gi|78194380|gb|ABB32147.1| PAS/PAC sensor hybrid histidine kinase [Geobacter metallireducens
           GS-15]
          Length = 650

 Score =  286 bits (731), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 92/480 (19%), Positives = 177/480 (36%), Gaps = 36/480 (7%)

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA-MTF 415
           +D +  A     ++    +   + +  + L R +            I+            
Sbjct: 47  LDALASATW-DIVISDYVMPSFSGLNAIALLRKEGYTTPLIVVSGKIEDEAAVETMRAGA 105

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
             +   +     +P    E E+ + R  K+K+E E+ +L   +E +   I I ++ G I 
Sbjct: 106 NDYILKDNLARLVPAIRRELEESEVRRQKKKVEDELRKLSHAVEQSPVSIIITDQNGTIE 165

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
             N   +++ GY V++ + +   +      P      L E ++           +   K 
Sbjct: 166 YVNPKFTQVTGYGVDEAVGQTPRILKSGKMPDSEYRRLWETITSGREW--HGDIINKKKN 223

Query: 536 EKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKES--SHKSDFL 589
             L   R  I  +  +      +     DISE ++ +     A     +           
Sbjct: 224 GDLFWERASISAIKDAEGVITHFVGVKEDISEQRRTELAHKQAMNQLRQAQKMEAIGQLA 283

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
             ++H+    LT I G+S ++ ++   P+ +P +    N I ++G    D+ + LL  S+
Sbjct: 284 GGIAHDFNNLLTVINGYSTMLLHEM--PVDDP-FRSEVNEILKAGERAADLTHQLLAFSR 340

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709
               +  L  + ++++  V     +++     + I++  S    +  +  D   V+QI +
Sbjct: 341 ----RQMLEPKVININHLVRNMEKMLKRLI-RENIVMHASLYEQLGVVKVDPGQVEQIIM 395

Query: 710 NILSNAIHFTPSGGQIIISTT--------------HTSNEEVILRVRDTGVGMTNYELEK 755
           N+L NA     +GG I I T                     V+L V D G GMT     K
Sbjct: 396 NLLVNARDALGNGGIITIETADVYLDKTFVNENPGAVEGNYVMLAVHDNGEGMTEETRRK 455

Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
             +PF         +G+GTGLGL     +V  + G   + S   + T   + FP  D+  
Sbjct: 456 IFEPFFTTKG----QGKGTGLGLATVYGIVKQSGGYIQVASELGQWTSFRVYFPRVDSEA 511



 Score = 65.8 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/249 (11%), Positives = 65/249 (26%), Gaps = 21/249 (8%)

Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLL 350
           L          L            ++        V++ P+   +   +G + Y NP F  
Sbjct: 114 LARLVPAIRRELEESEVRRQKKKVEDELRKLSHAVEQSPVSIIITDQNGTIEYVNPKFTQ 173

Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
           +T Y   + +         +       ++  + +    +                   + 
Sbjct: 174 VTGYGVDEAVGQTP----RILKSGKMPDSEYRRLWETITSGREWHGDIINK---KKNGDL 226

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI--LEATSDGIAII 468
                      +         G++ +  + R  +   +  + QL     +EA        
Sbjct: 227 FWERASISAIKDAEGVITHFVGVKEDISEQRRTELAHKQAMNQLRQAQKMEAIGQL---- 282

Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM------NHYLTEILSLDLR 522
              GI    N  ++ + GY    +   P           ++           ++L+   R
Sbjct: 283 -AGGIAHDFNNLLTVINGYSTMLLHEMPVDDPFRSEVNEILKAGERAADLTHQLLAFSRR 341

Query: 523 QTLEKITLG 531
           Q LE   + 
Sbjct: 342 QMLEPKVIN 350



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/181 (12%), Positives = 56/181 (30%), Gaps = 11/181 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID-PNNHIGDLLKRQNTWYGKT 147
            D +G ++ ++ +  +  G    + +G     +      D     + + +     W+G  
Sbjct: 158 TDQNGTIEYVNPKFTQVTGYGVDEAVGQTPRILKSGKMPDSEYRRLWETITSGREWHGDI 217

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                 G         +   I       + F G          ++ R       +  + L
Sbjct: 218 INKKKNGDLF--WERASISAIKDAEGVITHFVGV-----KEDISEQRRTELAHKQAMNQL 270

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
            + +K  +  +          +    L + N  S++  +    DD  ++E   +L + E 
Sbjct: 271 RQAQKMEAIGQLAGGIAHDFNN---LLTVINGYSTMLLHEMPVDDPFRSEVNEILKAGER 327

Query: 268 S 268
           +
Sbjct: 328 A 328


>gi|330995065|ref|ZP_08318982.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Paraprevotella xylaniphila YIT 11841]
 gi|332879513|ref|ZP_08447208.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|329576641|gb|EGG58144.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Paraprevotella xylaniphila YIT 11841]
 gi|332682479|gb|EGJ55381.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 491

 Score =  286 bits (731), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 75/367 (20%), Positives = 170/367 (46%), Gaps = 15/367 (4%)

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT- 505
           +      L +I+ + ++ I  ++ E IIL  N     +     ED++RK       +N  
Sbjct: 135 LMASKRYLETIINSINEPIVGLDNEQIILFINNEALNILNLKREDVIRKSAQEIAMRNDL 194

Query: 506 -PSVMNHYLTEILSLDLRQTLEKITLGSTKE--EKLLSLRIIIKKLPFSSCYSLTMHDIS 562
              ++     +          ++ +L    +  E    ++ +   +  +         ++
Sbjct: 195 LRRLICGMWEDKKKEQEAPKSKRESLKIYADNKESYFQVKYMEITMRGNDG-------VT 247

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
             K+    +       ++  + K+ F++ VSHE++TP++AI+   ++++++R G L NP 
Sbjct: 248 MEKRGDVIMLKNVTEFQELDTAKTTFISTVSHELKTPISAIMMSLQLLEDKRVGGL-NPE 306

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             E +  I  +   +L I  +LL+++++ESGK+ L  +     E +  AI   ++ A + 
Sbjct: 307 QEELSRSIKENSERLLSITGELLNMTQVESGKLQLKPKITKPIELIDYAIKANRVQAEKF 366

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
            I +   +   I ++  D   +  +  N+LSNA+ ++   G+++I      +  + + V+
Sbjct: 367 GIQVEVDYPEKIGKLFVDSEKIAWVLTNLLSNAVRYSSEAGRVVIGARQQDDNHIAMFVQ 426

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G G+     E   + + ++P +   + +GTGLGL +++  V+A+ G   + S   KG+
Sbjct: 427 DFGKGIDPRYHESIFEHYFRVPGT---KVQGTGLGLSISRDFVEAHGGTLTVDSELGKGS 483

Query: 803 LIEIIFP 809
           +  ++ P
Sbjct: 484 VFTMVLP 490


>gi|168033671|ref|XP_001769338.1| sensory histidine protein kinase [Physcomitrella patens subsp.
           patens]
 gi|162679444|gb|EDQ65892.1| sensory histidine protein kinase [Physcomitrella patens subsp.
           patens]
          Length = 369

 Score =  286 bits (731), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 74/260 (28%), Positives = 128/260 (49%), Gaps = 10/260 (3%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E  +  N+L  ++K AE  S  KSDFLA +SHEIRTP+  I+G + ++   +        
Sbjct: 5   ELVKANNELLISQKRAEHASHAKSDFLANMSHEIRTPIHGILGLTALLLESQLTA----D 60

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             E    +    +L+L I+N +LD+SKIE+G++++   P S+ + VS  + ++Q  A   
Sbjct: 61  QRESLMSVKECADLLLHIINSVLDLSKIEAGRLDIETVPFSIRKMVSSTLRMMQARAQAH 120

Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EV 737
            + +       +P  ++ D   ++Q  LN++ NA+ FT  G  + +      +     +V
Sbjct: 121 NLQLLWHIEGAVPDNLVGDPGKLQQCLLNLVGNALKFTNEGS-VTVRIFSQPSTPKTVDV 179

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
              V+DTG+G++  +L+    PF Q   S      GTGLGL + K  V+   G  +  S 
Sbjct: 180 EFEVQDTGIGISKEKLQDMFNPFTQADASTSRLYGGTGLGLCIVKRFVELLGGTIWAESE 239

Query: 798 PAKGTLIEIIFPLYDTSHPH 817
             KG+      P   ++  +
Sbjct: 240 ENKGSTFGFRVPFRVSAEEN 259


>gi|197116827|ref|YP_002137254.1| Cache/PAS domain-containing sensor histidine kinase response
           regulator [Geobacter bemidjiensis Bem]
 gi|197086187|gb|ACH37458.1| sensor histidine kinase response regulator, Cache, PAS and PAS
           domain-containing protein [Geobacter bemidjiensis Bem]
          Length = 955

 Score =  286 bits (731), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 91/527 (17%), Positives = 180/527 (34%), Gaps = 62/527 (11%)

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNL--FYANPSFLLLTKYKSVDDI----- 360
                A     E       ++ P P  +Y  G L     N +F +   Y + + +     
Sbjct: 326 RQQAEAELRASEQRYRYLFEQNPAPMLIYEKGTLQMLAVNDAFAIGYGYSNEEALALQLI 385

Query: 361 ---EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
                         A  LS +  +      R D T        H + ++   +       
Sbjct: 386 DLYPEEEKPKITEVAAGLSGHTYVGEWHHRRKDGTVFPIFVTSHDMTYSGRTARV----- 440

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILS 476
                          +  +  D ++ ++ +E E      + + + DGI II+ +    ++
Sbjct: 441 --------------AVITDITDRKLMEKALEEEANFNRLLFDHSPDGIVIIDPKTARFIN 486

Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
            N +V +  GY  E+  +          T       +  I+    R   E +      E 
Sbjct: 487 FNASVCRQLGYSREEFAQLRVFDVEAVETQEDTRRRIDGIVRDG-RGDFETMQRTREGEL 545

Query: 537 KLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
           + + +   I  +     Y     DI+E K+ + +L  ++K+              V+H+ 
Sbjct: 546 RNVQVTAQILTIQDRPVYYCIWRDITEHKKLEEQLRQSQKM-----ESVGRLAGGVAHDF 600

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
              L  IIG ++    Q   P  +P   +Y ++I ++     DI   LL  S+ E     
Sbjct: 601 NNMLGVIIGSAD--LCQHQIPADSP-LQKYLDHILKAAKRSSDITRQLLAFSRKE----V 653

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716
           +  + V+L+  + ++  ++      + + +    +  +  +L D     QI +N+ +N+ 
Sbjct: 654 VSPKAVNLNSLIIDSEKMLCRLI-GEDVKLTFKPSTGLWTVLIDPAQFDQILMNLSANSR 712

Query: 717 HFTPSGGQIIISTT--------------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
              P+GG + I+T                   + V + V DTG GM     +   +PF  
Sbjct: 713 DAMPNGGTLDIATGNVHLDAGYCRHHSDTVPGDYVKITVADTGTGMDRETKDHIFEPFFT 772

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
                   G G          +V  N G   ++S   +G++  I  P
Sbjct: 773 TKGVGVGTGLGL----ATVYGIVTQNNGFINVYSELDQGSVFNIYLP 815



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/149 (14%), Positives = 50/149 (33%), Gaps = 9/149 (6%)

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII--LSTNRAVSKL 484
            +    I  E+   +  + ++     +   + E     + I   +G +  L+ N A +  
Sbjct: 313 VLRALLIVREEDVRQQAEAELRASEQRYRYLFEQNPAPMLIY-EKGTLQMLAVNDAFAIG 371

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
           +GY  E+ L         +         +TE+ +     T         K+  +  + + 
Sbjct: 372 YGYSNEEALALQLIDLYPEEEKPK----ITEVAAGLSGHTYVGEWHHRRKDGTVFPIFVT 427

Query: 545 IKKLPFSSC--YSLTMHDISEWKQEKNKL 571
              + +S        + DI++ K  +  L
Sbjct: 428 SHDMTYSGRTARVAVITDITDRKLMEKAL 456



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/287 (10%), Positives = 69/287 (24%), Gaps = 18/287 (6%)

Query: 178 FRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSV-EKEKYDIFSQQSPP----P 232
            R   IV    V     A  +  ++++ +L E       + EK    + +          
Sbjct: 314 LRALLIVREEDVRQQAEAELRASEQRYRYLFEQNPAPMLIYEKGTLQMLAVNDAFAIGYG 373

Query: 233 HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL 292
           +   +     L + Y  ++    TE    L+                +       +  T 
Sbjct: 374 YSNEEALALQLIDLYPEEEKPKITEVAAGLSGHTYVGEWHHRRKDGTVFPIFVTSHDMTY 433

Query: 293 QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLL 350
              +          +   +    +E  N      D  P    +           N S   
Sbjct: 434 SGRTARVAVITDITDRKLMEKALEEEANFNRLLFDHSPDGIVIIDPKTARFINFNASVCR 493

Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
              Y   ++                 +    +     R D           T+Q  RE  
Sbjct: 494 QLGYSR-EEFAQLRVFDV--------EAVETQEDTRRRIDGIVRDGRGDFETMQRTREGE 544

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
           L        +     +      I  +  + +  + ++     ++ S+
Sbjct: 545 LR-NVQVTAQILTIQDRPVYYCIWRDITEHKKLEEQLRQS-QKMESV 589



 Score = 52.3 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/341 (9%), Positives = 90/341 (26%), Gaps = 16/341 (4%)

Query: 56  DQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIG 115
           +++    +      SE  + +                  +  +++      G    + + 
Sbjct: 322 EEDVRQQAEAELRASEQRYRYLFEQNPAPMLIYEKGTLQMLAVNDAFAIGYGYSNEEALA 381

Query: 116 MRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREF 175
           ++L D+           +   L   +T+ G+      +GT   + +    +    R    
Sbjct: 382 LQLIDLYPEEEKPKITEVAAGL-SGHTYVGEWHHRRKDGTVFPIFVTSHDMTYSGRTARV 440

Query: 176 SGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR 235
                  ++             +        L +       +   K   F   +     +
Sbjct: 441 ------AVITDITDRKLMEKALEEEANFNRLLFDHSPDGIVIIDPKTARFINFNASVCRQ 494

Query: 236 MKNKVSSLTEYYAHKDDVLKTEK------YPLLTSEESSLPEQEDFHTINLNQYTKKQYF 289
           +        +      + ++T++        ++          +      L         
Sbjct: 495 LGYSREEFAQLRVFDVEAVETQEDTRRRIDGIVRDGRGDFETMQRTREGELRNVQVTAQI 554

Query: 290 GTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFL 349
            T+Q+       +     H  L     + + +  E+V +       +   N+        
Sbjct: 555 LTIQDRPVYYCIWRDITEHKKLEEQLRQSQKM--ESVGRLAGGVA-HDFNNMLGVIIGSA 611

Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390
            L +++   D  +   L  +L A K S +   + +   R +
Sbjct: 612 DLCQHQIPADSPLQKYLDHILKAAKRSSDITRQLLAFSRKE 652


>gi|319786375|ref|YP_004145850.1| histidine kinase [Pseudoxanthomonas suwonensis 11-1]
 gi|317464887|gb|ADV26619.1| histidine kinase [Pseudoxanthomonas suwonensis 11-1]
          Length = 1187

 Score =  286 bits (731), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 117/744 (15%), Positives = 235/744 (31%), Gaps = 87/744 (11%)

Query: 85   FTWNIDAHGYLKEIS--EELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNT 142
            F   I A G L   S    L  + G      +G         L  D    +   L  ++ 
Sbjct: 381  FVETIGATGELSPASIRSALQDSRGRL---WLGRSGA--LMRLDGDKPRRLWSALNLEDA 435

Query: 143  WYGK-TTLWPIE--GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199
              G+    W +E    +L++    A +       +                         
Sbjct: 436  VMGRGPLEWILESPNGSLWLAFTGAGMQQRDLEGKVL----------------------- 472

Query: 200  LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
             + +      +     S            +    +R  + V+         D   +    
Sbjct: 473  AELRAGKTPGLDSADFSTVSIGPGGVPWIASGGTIRRWDPVAQGFVPLPGLDGDGEAGNV 532

Query: 260  PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ-NNSKESFEYLSHRNHPSLSAYFDEG 318
                 +       +    + L Q  + ++   L+   S+      +              
Sbjct: 533  HGFALDGQDRLWLQRLSGLELWQRGRVEWTRQLRLGVSEGIPATEATGMRIDARRRLWLA 592

Query: 319  ENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
                   +D  P                 F +     S + ++ A  +         + +
Sbjct: 593  TRRGLFRIDP-PDGGLPAR-------VRPFGVREGLPSQEFVDRAIAIDEDGVLVASTGD 644

Query: 379  NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
             ++  +    +D   ++    +  ++  R ++               +   +  +     
Sbjct: 645  GSLLLLDTNLADPPPVSPRLVIDALRVRRGDAWVDLPQAGGFELGPDDQDLEVVLRLLSY 704

Query: 439  DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
            D   +         +  S                          +L G+  + +  +   
Sbjct: 705  DDPGSH--------RYRS--------------------------RLLGFDSDWVEMRGGA 730

Query: 499  VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS--- 555
                Q  P      L   L      +  +    S       +    +  +          
Sbjct: 731  RMFSQLPPGSYRLQLQASLGHHSSWSPVQEFGFSVAPPWWRTTWATLVAVLLVLLLIVGG 790

Query: 556  -LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                      + +     H +++AE+ S  KS FLA + HE+RTP+T ++G SE++ +  
Sbjct: 791  GWLYRRRVRSRAQWQLALHKRELAEQASMAKSRFLATLGHEVRTPMTGVLGMSELLLDTS 850

Query: 615  FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                 + R   Y   I R+G+ +L +VND LD+++IE+GK+ L  +         E   L
Sbjct: 851  L----DSRQRSYVESIRRAGDHLLRLVNDALDLARIEAGKLELDSQDFDPVALAEEVAGL 906

Query: 675  VQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
            +   A ++ +      A  +P  +  D   V+QI LN+L NA+ FT  G ++++     S
Sbjct: 907  MAPVAEQRGLAFHLRVAPEMPAAVRGDPGRVRQILLNLLGNAVKFTDRG-EVVLELGTVS 965

Query: 734  NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ-QIRGEGTGLGLPLAKAMVDANMGKF 792
             E ++  VRDTG G++  +  +  + F Q   ++   R  G+GLGL + + +  A  G+ 
Sbjct: 966  PEGLVFVVRDTGPGLSEEQKARLFRRFEQADGARTTSRYGGSGLGLAICQELAVAMGGRI 1025

Query: 793  YIFSTPAKGTLIEIIFPLYDTSHP 816
             + ST   GT   +  PL   + P
Sbjct: 1026 EVDSTLGHGTAFRVQLPLPTAAAP 1049


>gi|296123452|ref|YP_003631230.1| ATP-binding region ATPase domain protein [Planctomyces limnophilus
           DSM 3776]
 gi|296015792|gb|ADG69031.1| ATP-binding region ATPase domain protein [Planctomyces limnophilus
           DSM 3776]
          Length = 576

 Score =  286 bits (731), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 77/268 (28%), Positives = 134/268 (50%), Gaps = 29/268 (10%)

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
           ++L+       + +  K++FLA +SHE+RTPL +I+GFSEV+ +    P    +   Y +
Sbjct: 283 DELAQVNLRLFELNKIKNEFLATMSHELRTPLNSILGFSEVLLSTSTLP---DKQRRYVS 339

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I  +G  +L+++ND+LD++KIESG+M LH    S+ + V   +  +   A +K + + +
Sbjct: 340 NIQTAGKNLLNLINDVLDLAKIESGRMELHPSDFSIYDLVERQVGSLMPLAEKKHLELTS 399

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN-------------- 734
             +  +P +  D   ++QI  N+LSNAI FTP GG++ +                     
Sbjct: 400 EVSPEVPLLWQDAGKLQQILGNLLSNAIKFTPDGGKVRVKVDLCPAERSPEEQTETIEAG 459

Query: 735 ------EEVILRVRDTGVGMTNYELEKAMKPFGQIPNS------QQIRGEGTGLGLPLAK 782
                 +   L V DTG+G+   E E+  + F Q  ++           EGTGLGL + +
Sbjct: 460 DAPPVLDHFALIVEDTGIGIPLEEQERVFEKFRQGQSTPGQKDLLTREYEGTGLGLSIVR 519

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            +     G+  + S   KG++  ++ PL
Sbjct: 520 ELSRLMGGEVRLQSEFGKGSVFTVVLPL 547


>gi|108761548|ref|YP_634819.1| sensor histidine kinase [Myxococcus xanthus DK 1622]
 gi|18030059|gb|AAL56598.1|AF449411_19 histidine kinase-like protein [Myxococcus xanthus DK 1622]
 gi|108465428|gb|ABF90613.1| sensor histidine kinase [Myxococcus xanthus DK 1622]
          Length = 502

 Score =  286 bits (731), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 88/352 (25%), Positives = 154/352 (43%), Gaps = 22/352 (6%)

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST-KEEKLLSLRIII 545
               D L +           +     LT+I  +DL +  E +       E     + +  
Sbjct: 134 CWEGDTLGRVILGPFTPEELADFPPSLTDISGVDLSRAHELVARVRRVPERTAAQVLVHF 193

Query: 546 KKL------PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES-------SHKSDFLARV 592
            ++           +  T   I    +    L        + +         KS FL  V
Sbjct: 194 GQVLAALVASGQRAFLATQLHIEAMLETHRDLEANNARLAQANIRLKELDRLKSTFLGTV 253

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHE+RTPL +IIG+SE++     G L NP  + Y   I   G  +L++++ +LD+S+IE+
Sbjct: 254 SHELRTPLASIIGYSEMLAEGLAGAL-NPEQLLYVRTIVEKGESLLNLISSILDLSQIEA 312

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN-NIPRILADLRSVKQIALNI 711
           G++ L   PV L   +  A+S V   A  K + +         PR+ AD   ++Q+ +N+
Sbjct: 313 GRLRLVMGPVDLGSVIQTAVSSVAPQAQRKGVELEVRLPPLPQPRLAADADKLRQVVVNL 372

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEE------VILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           L+NA+ FT SGG++ +  +  + +         + V DTG+G+   + E   + F Q+  
Sbjct: 373 LANAVKFTSSGGRVSVVMSEATAQHELAAPGYRVCVEDTGMGIREDQFENIFQSFYQVDG 432

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
           S      G GLGL + K++V+ + G+  + S   +G+   ++ PL      H
Sbjct: 433 SSTREHGGAGLGLAIVKSLVEGHGGRVSVESEFGRGSRFTVVLPLQPPLSEH 484


>gi|189347233|ref|YP_001943762.1| multi-sensor signal transduction histidine kinase [Chlorobium
           limicola DSM 245]
 gi|189341380|gb|ACD90783.1| multi-sensor signal transduction histidine kinase [Chlorobium
           limicola DSM 245]
          Length = 608

 Score =  286 bits (731), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 81/387 (20%), Positives = 155/387 (40%), Gaps = 30/387 (7%)

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
                   + + + +      L  +       +A+ + +G++     +  + FG      
Sbjct: 246 ATTLRRIRKADSQILLRTRKTLQDVFRTLPLPVAVFDPDGLVEIATESAERYFGMKP--- 302

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
                          ++                 K  +    + + +  +  I  +P   
Sbjct: 303 -GSNVHDLGYPWMEELLAGTFR--KGSGADSGKNKSFIQHFADNREIFFQPTIVPIPSGH 359

Query: 553 ------CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
                   +L   D+++                ++   K   +A VSH++RTPLTA+   
Sbjct: 360 PAEESSGTALIFRDVTQ--------------VHEQLELKRSVIATVSHQLRTPLTALRMS 405

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
             ++  +  G L N +  +           ++ I++DLLDI++IESGK +L    +S   
Sbjct: 406 IHLLLEEHTGHL-NGQQADLLLAAREESERLVHILDDLLDINRIESGKAHLDLSALSPCR 464

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726
             +E +    L   ++ + IR +    +P I+AD  S+  +  N+LSNA+ FT +GG I 
Sbjct: 465 IGAEGMEPFLLPCRDQGVSIRNTIPETLPDIVADRESLMHVFANLLSNALRFTSAGGSIT 524

Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
           ++     +  +   + DTG G+    +E   +PF ++P   Q    G GLGL + K +V+
Sbjct: 525 LN-ACEDDGNIRFSIEDTGTGIDAEHMEHLFEPFYRVPG--QREKNGIGLGLSIVKEIVE 581

Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLYDT 813
           A+ G     STP KG+      P+ +T
Sbjct: 582 AHGGSVDAESTPGKGSRFSFNLPIRNT 608


>gi|303246719|ref|ZP_07332997.1| Hpt sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
 gi|302492059|gb|EFL51937.1| Hpt sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
          Length = 625

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 94/371 (25%), Positives = 168/371 (45%), Gaps = 36/371 (9%)

Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520
           T D + ++N  GIIL    A   LFG P   +   PF + L  +           I +  
Sbjct: 16  TGDALLLLNENGIILHATDAAGVLFGTPRNQLTGLPFGIPLGASPSGTEV----TIATTS 71

Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
               + + +LG       L L  I             + D++E+K+ K +L+ A + A  
Sbjct: 72  RTALMRQESLGEAG----LPLTRIW------------LRDVTEFKKAKTELTAAHEAALA 115

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
               KS+FLA ++HEIRTP+  I+G +E+            +  EY      S   +L +
Sbjct: 116 GERAKSNFLANITHEIRTPMIGILGMAELTLATELTS----KQREYLEMARHSAQSLLTV 171

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILA 699
           +ND++D ++IE G + L   P  L   V EA+S+ +  A +K + +   F  ++P+ ++ 
Sbjct: 172 LNDIVDYARIEVGALELAKTPFDLFATVEEAVSVFRPLAVKKNLSLEYRFLGDVPQNLVG 231

Query: 700 DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE------VILRVRDTGVGMTNYEL 753
           D   ++QI +N++ NA+ FT SG  ++++      ++      +   VRDTG+G+   ++
Sbjct: 232 DASRLRQILINLVGNAVKFTDSGS-VVLAICPEPEKQSPGKVGLCFSVRDTGIGIPRDKI 290

Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII----FP 809
                 F Q   S   R +G GLGL + + +V+   G++ + S   +G++         P
Sbjct: 291 PAIFDSFTQADVSPARRYQGAGLGLAIVRHLVEMQGGEYGVESEEGQGSIFSCTMEFGLP 350

Query: 810 LYDTSHPHDCI 820
                   D +
Sbjct: 351 AGSEKDGPDAV 361


>gi|296132713|ref|YP_003639960.1| integral membrane sensor signal transduction histidine kinase
           [Thermincola sp. JR]
 gi|296031291|gb|ADG82059.1| integral membrane sensor signal transduction histidine kinase
           [Thermincola potens JR]
          Length = 547

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 97/262 (37%), Positives = 150/262 (57%), Gaps = 9/262 (3%)

Query: 558 MHDISEW---KQEKN--KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
           +HDI E    K  +   +L+ A K   + S +K++FLA +SHE+RTPLTAI+ F+E +  
Sbjct: 281 LHDIYEQLESKVAERTAELAAANKELAEISQYKTEFLANMSHELRTPLTAILAFTEELLT 340

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
           +  G L N    EY   I  SG  +L+++NDLLD+SKIESGKM L+   V++ EAV    
Sbjct: 341 KSMGQL-NAEQEEYLKDIRDSGRQLLNLINDLLDLSKIESGKMALNLTEVNVGEAVRGVE 399

Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
            L++  A +K I ++++       I+AD   V+Q+  N+L NAI FTP+GG+I +    T
Sbjct: 400 KLLRPLAQQKNIDMQSAITGTN-VIIADEEKVRQVIRNLLGNAIKFTPAGGRIELYVRDT 458

Query: 733 S--NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
              +E V+L V+D+G G+   +  +    F Q    +     GTGLGL L K +V+ ++G
Sbjct: 459 DRPDEGVLLTVKDSGPGIPAKDRARIFDSFYQGHRGRNKEYGGTGLGLALVKRIVEMHLG 518

Query: 791 KFYIFSTPAKGTLIEIIFPLYD 812
           +  + ST  +G+   +  P Y 
Sbjct: 519 EITLESTEGQGSAFTVYLPAYP 540


>gi|218547698|ref|YP_002381489.1| hybrid sensory histidine kinase BarA [Escherichia fergusonii ATCC
           35469]
 gi|218355239|emb|CAQ87846.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia fergusonii ATCC 35469]
 gi|324111190|gb|EGC05173.1| hsp90-like protein [Escherichia fergusonii B253]
 gi|325496174|gb|EGC94033.1| hybrid sensory histidine kinase BarA [Escherichia fergusonii
           ECD227]
          Length = 918

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 85/333 (25%), Positives = 151/333 (45%), Gaps = 17/333 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +FG+ +   +  P    +               L   +   +             +++ +
Sbjct: 193 IFGWRLMRDVTGPIRNMVNTVDR-----IRRGQLDSRVEGFMLGELDMLKNGINSMAMSL 247

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 248 AAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTP 307

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+ +       P       ++ N I+RS N +L I+ND+LD SK+E+GK+ L  
Sbjct: 308 LNGVIGFTRLTLKTELTPT----QRDHLNTIERSANNLLTIINDVLDFSKLEAGKLILES 363

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P  L   + E ++L+   +++K + +  +   ++P  ++ D   ++QI  N++ NAI F
Sbjct: 364 IPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKGDVPDNVIGDPLRLQQIITNLVGNAIKF 423

Query: 719 TPSGGQ-IIISTTHTSNEEVILRV--RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T  G   I++     SN +V + V  RDTG+G+   +  +  + F Q   S   R  GTG
Sbjct: 424 TERGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTG 483

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           LGL + + +V+   G     S P +G+      
Sbjct: 484 LGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516


>gi|156978233|ref|YP_001449139.1| histidine kinase [Vibrio harveyi ATCC BAA-1116]
 gi|156529827|gb|ABU74912.1| hypothetical protein VIBHAR_07038 [Vibrio harveyi ATCC BAA-1116]
          Length = 641

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 8/256 (3%)

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
             +    + + ++  A+  AE  +  KS+FLA +SHEIRTP+  IIG + ++ + +    
Sbjct: 218 RSVERVSEHQLEIEQARDKAEVANRKKSEFLATMSHEIRTPMNGIIGIASLLGDTKL--- 274

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
            + +  ++ + I+ S N ++ I++D+LD SKIE+GK+ L     +L + + E   L  + 
Sbjct: 275 -DEQQKDFVSIINSSSNSLMVIIDDILDFSKIEAGKIELEATTYNLLDLLHEVGRLHTVK 333

Query: 679 ANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQ---IIISTTHTSN 734
           A +K + +       +P  +  D+  +KQ+  N+LSNA+ FT  G     + + +  T  
Sbjct: 334 AQQKGLQLVCDIDPQLPLEVKGDMGRLKQVLSNLLSNAVKFTERGHVKLMVSLVSRKTDI 393

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
             V  RV D+G+G+     +   + F Q   S   +  GTGLGL +  ++V+   G+  +
Sbjct: 394 ASVHFRVVDSGIGIAKENQQTVFEKFQQADGSTTRKYGGTGLGLAICNSLVEVMGGEIRL 453

Query: 795 FSTPAKGTLIEIIFPL 810
            S P  G+  E   PL
Sbjct: 454 TSEPGLGSYFEFTIPL 469


>gi|302846523|ref|XP_002954798.1| volvoxopsin-5, sensory rhodopsin with histidine kinase domain
           [Volvox carteri f. nagariensis]
 gi|300259981|gb|EFJ44204.1| volvoxopsin-5, sensory rhodopsin with histidine kinase domain
           [Volvox carteri f. nagariensis]
          Length = 1238

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 73/261 (27%), Positives = 131/261 (50%), Gaps = 5/261 (1%)

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
             I+    E+       +  +     K  F++ +SHE+RTPL  IIG S+ +     G +
Sbjct: 306 RLIAMRIVEEGNRIQVIQELKDLVEQKERFMSSMSHELRTPLNGIIGLSDALLVGSCGEI 365

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
            N + ++    I  SG  +L+++ND+LD + +  GK+ +  E V+L   V + I L Q  
Sbjct: 366 -NDQALKTITTIKTSGARLLNLINDILDAASMRKGKLTIKHEKVNLKRVVDDVIDLCQPL 424

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738
           A    + +      N+P +L D   + Q+  N++ N+  FT +G  I I+ +   + EV 
Sbjct: 425 AKR-GVKLVNDLRENVPFVLGDTGRIIQVFHNLIGNSCKFTHNGF-ISIAASVKDD-EVE 481

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           + V DTG+G+   + ++    F Q+  S   +  GTGLGL L K +V+A+ G+  + S  
Sbjct: 482 VAVSDTGIGIPEDKFDQIFLAFEQVDMSVTRKYGGTGLGLNLVKQLVEAHGGRISVKSKE 541

Query: 799 AKGTLIEIIFPLYDTS-HPHD 818
            +GT       ++ ++ HP++
Sbjct: 542 GQGTTFFFTLKIHSSAEHPNE 562


>gi|299146842|ref|ZP_07039910.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
 gi|298517333|gb|EFI41214.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
          Length = 660

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 101/517 (19%), Positives = 193/517 (37%), Gaps = 43/517 (8%)

Query: 318 GENLTPETVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
            +NL     +   +   +Y    L    N S L     K   DI      +    + ++ 
Sbjct: 10  ADNLLHNIFNDLSVGLELYDKDGLMIDVNYSRLRSMGIKDKKDILGYNLFNYTSFSDEIK 69

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           +        +    +       RL     +      +T           E      I  +
Sbjct: 70  EQIRKGE-TVRVMAKYDFDDLCRLFPTNLSGIKFFEITVSFVHNDKS--EITNYMVITQD 126

Query: 437 DVDTR--------------INKRKMEIEVMQL-------CSILEATSDGIAIINREGIIL 475
             +                 +K+++     ++         +L   + G+A I  + I+ 
Sbjct: 127 ITERVLWQNKYDNLYEEVVRSKKELLESEQRMIHLIRQNELVLNNINSGLAYIANDYIVQ 186

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
             N ++             +   +     T    N  +         +++    L +   
Sbjct: 187 WENISLCSKSLSYEAYKKGELCYLTAHNRTTPCENCVMQRARRSGQVESI----LFNLDN 242

Query: 536 EKLLSLRIIIK--KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
           + ++ +       +        + + D++E +    +L  A+  AE+    KS FLA +S
Sbjct: 243 KHVIEVFATPIFNEQGDVDGVVIRVDDVTERQHMIGELEKARSRAEQSDKLKSAFLANMS 302

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HEIRTPL AI+GFS+++              E+   I+ +  L+L ++ND+LD+SKIE+G
Sbjct: 303 HEIRTPLNAIVGFSDLLM----VTEDQEEKEEFIQIINANNELLLKLINDILDLSKIEAG 358

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713
            + L +E   L    +E  + +       ++ +          +  D   + QI  N ++
Sbjct: 359 SVELKYEDFDLAVYFNELAASMHRRVVNPQVRLVPVNPYETCTVRLDKNRLAQILTNFVT 418

Query: 714 NAIHFTPSGGQIIISTTHTS-NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           NAI +T  G   +I   +   +  + L VRDTG+G+   + +K    F ++        +
Sbjct: 419 NAIKYTSKG---MIEMGYEKIDGNIRLYVRDTGIGIPEDKKDKVFHRFEKLD----EFAQ 471

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GTGLGL + KA+V+A  G+    S   KG+L   + P
Sbjct: 472 GTGLGLSICKAIVEACRGEIGFESEFDKGSLFWAVLP 508


>gi|238753717|ref|ZP_04615078.1| Sensor kinase protein rcsC [Yersinia ruckeri ATCC 29473]
 gi|238707953|gb|EEQ00310.1| Sensor kinase protein rcsC [Yersinia ruckeri ATCC 29473]
          Length = 925

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 91/375 (24%), Positives = 164/375 (43%), Gaps = 29/375 (7%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
             ++E        I+ +   GI+I+   +G  + +N                  +   L 
Sbjct: 328 ASQLEEHEQFNRKIVASAPVGISILRLSDGTNILSNELA-------------HNYINLLT 374

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
                     +T I+       ++ +    T     L +  +  +          + D+S
Sbjct: 375 NED----RERITRIICDQQANFVDVM----TSNNNNLQISFVHSRYRNEDVAICVLVDVS 426

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
              + +  L      AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R
Sbjct: 427 SRVKMEESLQEMAAAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPKGVDR 485

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                  ++ S +L+L I++D+LD SKIES ++ +  +  S  E ++   +       +K
Sbjct: 486 ---LVTAMNNSSDLLLKIISDILDFSKIESEQLKIEPQAFSCVEVITHIAANYLPLVVKK 542

Query: 683 RILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
           R+ +      N+P  +  D   ++Q+  N+L+N+I FT +G  I++         +  RV
Sbjct: 543 RLGLYCFIEPNVPIEMNGDPVRLQQVISNLLNNSIKFTDTG-CIVVQVRL-HGPYLEFRV 600

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
           +DTGVG+ + E+ +   PF Q+    Q   +GTGLGL + + +++   G   + S P  G
Sbjct: 601 QDTGVGINHKEITQLFDPFFQVGTGVQRHFQGTGLGLAICEKLINMMDGDVEVNSEPGIG 660

Query: 802 TLIEIIFPLYDTSHP 816
           ++     PLY+ + P
Sbjct: 661 SIFSFRIPLYNATLP 675


>gi|148654653|ref|YP_001274858.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp.
            RS-1]
 gi|148566763|gb|ABQ88908.1| GAF sensor signal transduction histidine kinase [Roseiflexus sp.
            RS-1]
          Length = 1017

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 99/588 (16%), Positives = 208/588 (35%), Gaps = 43/588 (7%)

Query: 242  SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301
             L  +      +L+      + + E++   Q+    +        +    LQ + +    
Sbjct: 454  DLRPFTVEDQRLLEALADYAVIALENARQFQKIDQALARRAQELARTNEQLQQHLRSLTA 513

Query: 302  --YLSHRNHPSLSAYFDEGENLTPETVDKCPI--PFFVYSHGNLFYANPSFLLLTKYKSV 357
                    + +L +  +          +         +   G +    P   +  +    
Sbjct: 514  LNAFGMAINTTLRSPHEILSMTARGIAEMTGAIGAMALLPDGEIMR--PVVSIGLRMPLD 571

Query: 358  DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
            + +            P     +   P    R     +   A   T+              
Sbjct: 572  ERMLNVVHRVIATGRPDTLPPDPEAPGRAPRCVVLIVPLRATQRTL----GCVCVAYTNA 627

Query: 418  FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
              + +     +         +++      +     Q+ SIL +T +GI +I+ +G +   
Sbjct: 628  LPEPSDRETVILFASQAAVAIESIDLFMAVRTARDQMASILASTREGILLIDTDGTVAVA 687

Query: 478  NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS--------LDLRQTLEKIT 529
            N A+S L       I   P   FL +   +                       Q +    
Sbjct: 688  NAALSDLTTLDASIIHGLPIDAFLSRWFEAAAYETEECAALQRGIDDVLTGTAQFVAGEL 747

Query: 530  LGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
             G + + + L   ++  +          L + DI+  K+ +                + D
Sbjct: 748  SGRSGQLRHLEWSVLRAQSSGDSHGGVLLVLRDITATKEAE--------------RMRHD 793

Query: 588  FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
                + H++R+PL+ ++   E++     G L N +          S   +LD++N LLDI
Sbjct: 794  LTHMIVHDLRSPLSGVMASIELMMRGVPGKL-NDQQRHVLQIASTSAANMLDMINTLLDI 852

Query: 648  SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707
            S++E+G+M +     ++ + + +++  +   A ++ I IRT    ++P I ADL  + +I
Sbjct: 853  SRLEAGRMPIERCIGNIRDIIHDSVQRLASLALDRAITIRTEVEEDVPDIYADLGLISRI 912

Query: 708  ALNILSNAIHFTPSGGQIIISTTHT--SNEE--VILRVRDTGVGMTNYELEKAMKPFGQI 763
              N++SNAI F+  GG + +        + +  VI+ V D GVG+   + E+    F Q+
Sbjct: 913  IQNLVSNAIKFSHRGGLVTVRAAVETADDGQPKVIVSVSDQGVGIAPGDRERIFAKFSQV 972

Query: 764  PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
                  R  GTGLGL   +  ++A+  + ++ S   +G+      P+ 
Sbjct: 973  ----GERRGGTGLGLAFCRQAIEAHGERIWVNSELGRGSTFFFTIPVA 1016


>gi|153871596|ref|ZP_02000728.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Beggiatoa sp. PS]
 gi|152071937|gb|EDN69271.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Beggiatoa sp. PS]
          Length = 565

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 72/249 (28%), Positives = 134/249 (53%), Gaps = 2/249 (0%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           KL    + A +++  K+ FL   +H++R PL  I+G+ ++++ +    + +   ++Y N 
Sbjct: 301 KLYTHLEEANRQNERKNQFLGMAAHDLRNPLGVILGYGQMLQEEAL-EILDEEQLDYLNR 359

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I  +    L++VN+LLD++KIESG + L  E   L   ++EAISL +  A  K+I +  +
Sbjct: 360 IHNASQFTLNLVNNLLDVAKIESGNLALELEQTCLMRTITEAISLNRFLAESKQIQLNFN 419

Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749
           +  N+P +  D   ++Q+  N++SNAI ++    ++ I  T   N+ V++ V D G G+ 
Sbjct: 420 YDENLPEMTVDASKIQQVINNLISNAIKYSHPQTKVQIHATRKQND-VLISVTDEGQGIP 478

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             EL+K  +PF +           TGLGL + + +V+A+ GK ++ S    G+   ++ P
Sbjct: 479 KSELDKLFQPFSKTSVKSTAGESSTGLGLLICRQIVEAHSGKIWVESEVGVGSTFYVLLP 538

Query: 810 LYDTSHPHD 818
                 P +
Sbjct: 539 PIPEPQPQN 547


>gi|170726313|ref|YP_001760339.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
 gi|169811660|gb|ACA86244.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
          Length = 1680

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 117/757 (15%), Positives = 252/757 (33%), Gaps = 59/757 (7%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD-ILHIDPNNHIGDLLKRQNTWY--- 144
            I A G +   +             ++G ++  +       + + ++ + L          
Sbjct: 492  ISAKGVIIACNRAAESLFQYSRDDLLGKKINLLMPSPFTEEHDTYLSNYLNTGTKKVIGQ 551

Query: 145  -GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
              +      +G+   + + +    I      F+GF     V    V+        + +  
Sbjct: 552  GREVIGLKRDGSTFPMYLTV-GEVIQEGESIFTGF-----VRDITVEKKFEQEMMKSEAL 605

Query: 204  FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL------RMKNKVSSLTEYYAHKDDVLKTE 257
               + +           K  I S       L       +  +  +        ++     
Sbjct: 606  NRGMVDTCLDAILSISVKGVIVSCNHAAQSLFQYRSDELIGQKINRLMPSPFTEEHDGYL 665

Query: 258  KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
            +    T  +  + +  +   +  +  T   Y    +        +       S    ++ 
Sbjct: 666  EKYFATGIKKVIGQGREVVGLKRDGSTFPMYLTVGEVEQDGETIFTGFVRDISKEKQYEL 725

Query: 318  GENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKS------VDDIEIAGGLSTLLD 371
                T E  D             +         +            + ++   G+    D
Sbjct: 726  ELKKTNE--DLLKQNELKSQVSRINDLTQGATDMMAMSDEIISALAEMMKAGNGVLYTYD 783

Query: 372  APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
                    +       R       A       Q  +E    +         Q    + Q+
Sbjct: 784  RDDARLTLSGSYAFKKRKAILPSIAMGEGLAGQCAKEQKTILLTHVPIDYIQINSALGQS 843

Query: 432  GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
                  V   + + ++   +  L S  E + + + +I     ++S N       G  V +
Sbjct: 844  TPLNVLVVPVLFEDELVGVIE-LASFREFSDEQVEVI----ELISCN------LGIVVNN 892

Query: 492  ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK------EEKLLSLRIII 545
            +  +  T  L   T         +   L              K      +++  +L++  
Sbjct: 893  LRNQQVTQELLVETQRQSEELQAQQEELKSSNDSLVEQTQRLKASEEELKDQSEALKVSN 952

Query: 546  KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
            K+L     +     D  E +  +  L+         S +KS+FLA +SHE+RTPL +++ 
Sbjct: 953  KELEEKQTFLKRQRD--EIESARADLTVKADELALASKYKSEFLANMSHELRTPLNSLLL 1010

Query: 606  FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
             ++ + + +   L N   +E A  I   GN +L ++ND++D+SK+E+GK+++H E V++ 
Sbjct: 1011 LAKGLADNKSKNL-NETEVEDAQVIFDGGNNLLCLINDIMDLSKVEAGKLSIHIEEVNIS 1069

Query: 666  EAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQ 724
                    +    A  + +         +P  + +D   ++QI  N+LSNA+ FT +G  
Sbjct: 1070 TLCRNLRQVFNPIAKNRELEFDIKVDEKLPATVSSDGHRIEQILRNLLSNALKFTEAGS- 1128

Query: 725  IIISTTHTSNEEVI------------LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
            + +   +++ + V               V DTG+G+   +++   + F Q   S   +  
Sbjct: 1129 VTLFIGYSAADTVFSHSCLDPNTALSFAVVDTGIGIPQNKIQAIFEAFQQQDGSTSRKYG 1188

Query: 773  GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            GTGLGL +A+ +     G+  + S P +G+   +  P
Sbjct: 1189 GTGLGLTIARELTRLLGGEIQLESEPNQGSTFTLFLP 1225



 Score =  113 bits (284), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 35/249 (14%), Positives = 95/249 (38%), Gaps = 9/249 (3%)

Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
             +   G +   N +   + KY + D I     +  L+  P  S+++           ++
Sbjct: 362 ISIKDDGTILSVNLATERMFKYLAEDLIGKN--IKVLMPEPYHSEHDNYLSKYKNTGIKS 419

Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
            I     +  ++ +                Q  +     G   +    +  +++M     
Sbjct: 420 VIGKGREVQAMRSDGSTF---PIFLSVGEVQQGDETLYTGFIRDISQQKQYEQEMLKSEA 476

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
               +++   D I  I+ +G+I++ NRA   LF Y  +D+L K   + +        + Y
Sbjct: 477 LNRGMVDTCLDAILSISAKGVIIACNRAAESLFQYSRDDLLGKKINLLMPSPFTEEHDTY 536

Query: 513 LTEILSLDLRQTL--EKITLGSTKEEKLLSLRIIIKKL--PFSSCYSLTMHDISEWKQEK 568
           L+  L+   ++ +   +  +G  ++     + + + ++     S ++  + DI+  K+ +
Sbjct: 537 LSNYLNTGTKKVIGQGREVIGLKRDGSTFPMYLTVGEVIQEGESIFTGFVRDITVEKKFE 596

Query: 569 NKLSHAKKI 577
            ++  ++ +
Sbjct: 597 QEMMKSEAL 605



 Score = 80.8 bits (198), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 58/137 (42%), Gaps = 4/137 (2%)

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
             +     +   +     I+    DGI  I  +G ILS N A  ++F Y  ED++ K   
Sbjct: 335 QIKERNTSLSRSLSLNKGIVSTAVDGIISIKDDGTILSVNLATERMFKYLAEDLIGKNIK 394

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTL--EKITLGSTKEEKLLSLRIIIKKLPFSSC--Y 554
           V + +   S  ++YL++  +  ++  +   +       +     + + + ++       Y
Sbjct: 395 VLMPEPYHSEHDNYLSKYKNTGIKSVIGKGREVQAMRSDGSTFPIFLSVGEVQQGDETLY 454

Query: 555 SLTMHDISEWKQEKNKL 571
           +  + DIS+ KQ + ++
Sbjct: 455 TGFIRDISQQKQYEQEM 471



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/411 (9%), Positives = 121/411 (29%), Gaps = 46/411 (11%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY-----GK 146
            G +  ++    +     A  +IG  +  +    +   +++     K            +
Sbjct: 367 DGTILSVNLATERMFKYLAEDLIGKNIKVLMPEPYHSEHDNYLSKYKNTGIKSVIGKGRE 426

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                 +G+    PI L+   +  +  + + + GF  +              + +     
Sbjct: 427 VQAMRSDGSTF--PIFLSVGEV--QQGDETLYTGF--IRDISQQKQYEQEMLKSEALNRG 480

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV------SSLTEYYAHKDDVLKTEKYP 260
           + +           K  I +       L   ++        +L       ++        
Sbjct: 481 MVDTCLDAILSISAKGVIIACNRAAESLFQYSRDDLLGKKINLLMPSPFTEEHDTYLSNY 540

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
           L T  +  + +  +   +  +  T   Y    +   +    +       ++   F++   
Sbjct: 541 LNTGTKKVIGQGREVIGLKRDGSTFPMYLTVGEVIQEGESIFTGFVRDITVEKKFEQEMM 600

Query: 321 LTPET----VDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
            +       VD C      +   G +   N +   L +Y+S + I     ++ L+ +P  
Sbjct: 601 KSEALNRGMVDTCLDAILSISVKGVIVSCNHAAQSLFQYRSDELIGQK--INRLMPSPFT 658

Query: 376 SDNNAI----------------KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
            +++                  + V+  + D +       +  ++ + E           
Sbjct: 659 EEHDGYLEKYFATGIKKVIGQGREVVGLKRDGSTFPMYLTVGEVEQDGETIFTGFVRDIS 718

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470
           K  Q            +  +  + + +++ +V ++  + +  +D +A+ + 
Sbjct: 719 KEKQ------YELELKKTNEDLLKQNELKSQVSRINDLTQGATDMMAMSDE 763


>gi|254413753|ref|ZP_05027522.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
 gi|196179350|gb|EDX74345.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
          Length = 1022

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 74/243 (30%), Positives = 133/243 (54%), Gaps = 9/243 (3%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  AK+ A+  +  KS+FL+ +SHE+RTP+ AI+GF+++++  +  P    ++  Y   
Sbjct: 543 ELQQAKEAADAANRAKSEFLSNMSHELRTPMNAILGFTQLMQRDQSLP---AQHQGYMEI 599

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I+ SG  +L+++ND+L++SKIE+G++ L     +L + +    S+ QL A  K + +R  
Sbjct: 600 INHSGEHLLELINDVLEMSKIEAGRITLAEIDCNLHQLLRRLESMFQLKAKSKGLRLRVQ 659

Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI---LRVRDTG 745
             + +P  I  D   ++Q+ +N+LSNAI FT   GQ+ +  +     + +    +V DTG
Sbjct: 660 RDDTVPQWIRTDEHKLRQVLINLLSNAIKFT-ENGQVTLEVSGVRQGKTVNLGFKVADTG 718

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
            G+   +  +  + F Q    Q    EGTGLGL +++  V    G+  I S   +G+  +
Sbjct: 719 PGIAKEDRNELFQAFKQTKLGQN-TYEGTGLGLKISQKFVQLMGGEITITSELGQGSCFK 777

Query: 806 IIF 808
              
Sbjct: 778 FQI 780


>gi|300313023|ref|YP_003777115.1| hypothetical protein Hsero_3729 [Herbaspirillum seropedicae SmR1]
 gi|300075808|gb|ADJ65207.1| hypothetical protein Hsero_3729 [Herbaspirillum seropedicae SmR1]
          Length = 765

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 82/286 (28%), Positives = 132/286 (46%), Gaps = 14/286 (4%)

Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
           L   I  +     + LT   +   +++    +  K+ A+  +  KS FLA VSHEIRTP+
Sbjct: 304 LVAAISLVGLIGGFVLTWRQVRRREEDALLATRLKEEADHANEAKSHFLAMVSHEIRTPM 363

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
             I+G SE++           +  +YA+ I  +   ++ I+ND+LD SKIESGK++L   
Sbjct: 364 NGILGLSELLMESGLSS----KQRDYADSIHGATGGLVRIINDILDFSKIESGKLDLEMV 419

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFT 719
                  V E   L +     K +             ++ D   +KQ+  N+LSNAI FT
Sbjct: 420 AFHPVRLVQELSDLYRPSLQRKDVQFDLHLDCPENLSVVGDPARLKQVLGNLLSNAIKFT 479

Query: 720 PSGGQIIISTTHTSNE------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
            +G  + +S +   +E       +   + DTG+G++   L++  +PF Q  +S   R  G
Sbjct: 480 QAG-HVQLSMSARQDESGPSRWRLFFAITDTGIGISPEALQQLFRPFAQADSSISRRFGG 538

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF--PLYDTSHPH 817
           TGLGL ++K +V+   G     S P + T        P   T  P 
Sbjct: 539 TGLGLAISKNLVELMGGTIACQSIPGESTRFSFEILCPEASTPAPE 584


>gi|229523745|ref|ZP_04413150.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae bv. albensis VL426]
 gi|229337326|gb|EEO02343.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae bv. albensis VL426]
          Length = 868

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 88/374 (23%), Positives = 155/374 (41%), Gaps = 22/374 (5%)

Query: 442 INKRKMEIEVMQ-LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP---F 497
               K+  E  + L  +L+A    I I + +G ++ TN A  K++    E    +P    
Sbjct: 206 EQVAKLSTEQQRWLTELLDAIPSMIFISDEKGEVVLTNAAYRKIYHTCCEKGCVQPQPEC 265

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT 557
           +     +        + +    +         +             I   +     Y   
Sbjct: 266 SFLALPDQHEAEYSIIIQAPKSNCSIGEHYFHVTRRA---------ISHPINQRKYYLTL 316

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
            +DI+E K+ +  L  + + A +    ++ FLA VSHE+RTP+ A++G  E++ ++    
Sbjct: 317 FNDITELKETEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGLMEILASR---- 372

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
           L +            S   +   VND+LD SKIE+ ++ L     +L + +   +   + 
Sbjct: 373 LKSSESQLLLTNAISSAERLKLHVNDILDFSKIEAQQLQLDIGLYNLADELGPLLRGFEA 432

Query: 678 YANEKRILIRTSFANN-IPRILADLRSVKQIALNILSNAIHFTPSGGQI-IISTTHTSNE 735
            A  K I     ++ N +     D     QI  N+LSNAI FT  G  +  I        
Sbjct: 433 SAQLKEIEFDVIWSPNSLLLANFDALRFNQIVTNLLSNAIKFTDQGRVVFKIDVAPE--- 489

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            + + V DTG GMT  +++    PF Q  ++   R  GTGLG+ +   +++   GK  + 
Sbjct: 490 MLTIVVEDTGCGMTQTQIDSLFVPFVQADSTITRRFGGTGLGMSIVANLIELMNGKIEVK 549

Query: 796 STPAKGTLIEIIFP 809
           S   +GT I++  P
Sbjct: 550 SEFEQGTQIKVSLP 563


>gi|119471215|ref|XP_001258144.1| sensor histidine kinase/response regulator Fos-1 [Neosartorya
           fischeri NRRL 181]
 gi|119406296|gb|EAW16247.1| sensor histidine kinase/response regulator Fos-1 [Neosartorya
           fischeri NRRL 181]
          Length = 708

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 95/528 (17%), Positives = 193/528 (36%), Gaps = 34/528 (6%)

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLT 352
           + +K S          + +   +   +         P+P  V      +   + S L   
Sbjct: 42  DTAKPSQTPRCDAPRDAHAEVVENDTSSLNRIFRFTPVPTLVLDSSLRVMEVSESHLAFC 101

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS-ARLHTIQWNRENSL 411
                  +  +     L   P          + +  + R         L  I     +  
Sbjct: 102 GKSRDFVLGASIYELPLATIPAPDIPTLNGALHVAITTRAVQVIETIHLPRIS----SYF 157

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINR 470
           ++   P  +       + +           ++   +         +++   D  I +++ 
Sbjct: 158 SLKITPIFQGTTLLNLVLEAHNVTRTHSESLHNAYI---NETYKILVDTVRDYAIFMLDA 214

Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH--YLTEILSLDLRQTLEKI 528
            G I + N   + + GY   +I+ + F+VF              L   L       +E  
Sbjct: 215 RGNIATWNSGAAIIKGYKANEIIGRHFSVFYGPEDRLADKPGKELELCLRDGK---VEDE 271

Query: 529 TLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
                ++       ++I  +        +     D++E K  + ++       E+ S  K
Sbjct: 272 GWRYRQDGSRFWANVMITPIFSFGRHVGFVKVTRDLTERKAAEARMV---AAFEESSKMK 328

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
           SDFLA +SHEIRTP+  +     ++ +       + +  EY + I+ S +++L ++ND+L
Sbjct: 329 SDFLANMSHEIRTPMNGMHLALTMLGSTEL----DAQQREYTSIIEDSMSILLQVINDVL 384

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSV 704
           D SK+ SG  +L+ + +S++  V   I   +  A    + I  S     P++   D    
Sbjct: 385 DYSKLSSGTFSLNTDVLSVENIVGAVIRNCK--ALNPAVEISCSMPPGFPKLLRGDPLRY 442

Query: 705 KQIALNILSNAIHFTPSGG-QIIISTTHTSNE----EVILRVRDTGVGMTNYELEKAMKP 759
           +Q+  N++ NA+ FT  G  ++        ++     +   V DTG+G+    +     P
Sbjct: 443 RQVIQNLVGNAMKFTEKGHVKVTHRFAVDEHDANMYTITTEVTDTGIGVPEDAINTLFTP 502

Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP-AKGTLIEI 806
           F +  +S   R +GTGLGL + K++ +   G       P  KG+   +
Sbjct: 503 FTRFADSATKRYQGTGLGLSICKSLAELMDGSVGYKPNPEGKGSCFWL 550



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 44/142 (30%), Gaps = 10/142 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH--IDPNNHIGDLLKRQNTW 143
            + +DA G +   +       G  A ++IG              D      +L  R    
Sbjct: 209 IFMLDARGNIATWNSGAAIIKGYKANEIIGRHFSVFYGPEDRLADKPGKELELCLRDGKV 268

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +   +  +G+      ++   PI+S  R        G V V R   + +A   R+   
Sbjct: 269 EDEGWRYRQDGS--RFWANVMITPIFSFGRHV------GFVKVTRDLTERKAAEARMVAA 320

Query: 204 FSHLHEIKKGHSSVEKEKYDIF 225
           F    ++K    +    +    
Sbjct: 321 FEESSKMKSDFLANMSHEIRTP 342


>gi|157363248|ref|YP_001470015.1| multi-sensor signal transduction histidine kinase [Thermotoga
           lettingae TMO]
 gi|157313852|gb|ABV32951.1| multi-sensor signal transduction histidine kinase [Thermotoga
           lettingae TMO]
          Length = 863

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 86/383 (22%), Positives = 170/383 (44%), Gaps = 33/383 (8%)

Query: 439 DTRINKRKMEIEV---MQLC----SILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
           + R     +E +      L     SIL+  +  + +I+R+G +L  N+ V +L G P E 
Sbjct: 498 ELRKKTESLEQQKNMIDYLRKFSESILQNLTTAVIVIDRQGKVLECNKRVEQLLGLPKER 557

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
           ++   +T F        +     ++       TL +  + +   E+    +         
Sbjct: 558 VIGSAYTDF--GEAFQDVFGVAMKVFERGETITLSRYRIETANGERFFDTKYSPLWDIAG 615

Query: 552 ---SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
              +   +T+ D+++    + +    +K+A        +  ARV+HE+R P+T I GF  
Sbjct: 616 SSMNGVIVTLEDVTDQYLLEQERKDKEKLA-----LLGEMSARVAHELRNPITVIGGFLN 670

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
            +K     P    R   Y N +    + + +IV+++L+ S+      N+      ++E +
Sbjct: 671 RLKKNISDPQARER---YLNILSNEVDNLQNIVSEILEFSR---SARNIDESKFQINELI 724

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
            E    +Q  A   +I +    +  +  ++AD   +K++ +N++ NAI  TP GG+II+ 
Sbjct: 725 EEVAFFMQEKAARNKINLEFMLSP-LQEVVADRNRIKRVLINLVQNAIEATPQGGRIILK 783

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD-A 787
            +    + V++ V +TG  ++   L K   PF         +  GTGLGLP+ K +++  
Sbjct: 784 -SQQDQDRVLVSVFNTGEPISEENLRKIFVPFYTT------KTYGTGLGLPICKKIIEDE 836

Query: 788 NMGKFYIFSTPAKGTLIEIIFPL 810
           + G+ +  S P +GT  +   P+
Sbjct: 837 HGGRIWAESKP-EGTEFKFEIPI 858



 Score = 44.2 bits (103), Expect = 0.085,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 42/130 (32%), Gaps = 6/130 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G + E ++ + + +G    ++IG    D  +    D       + +R  T      
Sbjct: 534 IDRQGKVLECNKRVEQLLGLPKERVIGSAYTDFGEAF-QDVFGVAMKVFERGETITLSRY 592

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                    +     +  P++      S   G  IV +  V +      +R DK+   L 
Sbjct: 593 RIETANGERFFDTKYS--PLWDIAG--SSMNGV-IVTLEDVTDQYLLEQERKDKEKLALL 647

Query: 209 EIKKGHSSVE 218
                  + E
Sbjct: 648 GEMSARVAHE 657


>gi|116749922|ref|YP_846609.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Syntrophobacter fumaroxidans MPOB]
 gi|116698986|gb|ABK18174.1| PAS/PAC sensor signal transduction histidine kinase
           [Syntrophobacter fumaroxidans MPOB]
          Length = 363

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 63/367 (17%), Positives = 148/367 (40%), Gaps = 20/367 (5%)

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
               +  IL + +D +  ++    ++  N++  K+FG+  ++I+ +  +  +      + 
Sbjct: 13  SEAIIRDILASVTDAVITVDENHNVVYCNQSAEKMFGWRRDEIVGRDVSPLIPDPHHDMH 72

Query: 510 NHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWK 565
             Y+   +   + + +   +   G  K+     + I            ++  + DI++ K
Sbjct: 73  RQYVQRYVDTGIARVIGEARECRGQRKDGTTFPVEISYSLSRTGGHLFFTAVIRDITQRK 132

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + + ++   + +A+   +     +A + HEIR PL  I GF+  +  +      + +   
Sbjct: 133 EMEREVRFMETLADVGKA-----VAHIGHEIRKPLVLIGGFAGQV-ERCDSLRASEKDRR 186

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
               I      +  +++ L  +++  S            +  V   + L+     +++I 
Sbjct: 187 KLRIIMDEIKRLETLLSSLRVLTRPPSSSHKSSLSL---NAVVESTLELLTPMLKDRKIQ 243

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           ++   + +   +  D   ++Q+ LN+L NAI      G + IS +    +   + V D G
Sbjct: 244 LKKDLSADRIMVHGDPNQLEQVFLNLLDNAISALRHSGTVTIS-SVREKDTARVVVEDDG 302

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
            G+     E+   PF            GTGLGLP+ + ++  + G   + S+ ++GT   
Sbjct: 303 PGIPEELQERIFDPFFTTKPD------GTGLGLPICRNIIRDHGGTLTLHSSTSRGTRFI 356

Query: 806 IIFPLYD 812
           +  PL  
Sbjct: 357 VELPLSP 363



 Score = 46.6 bits (109), Expect = 0.020,   Method: Composition-based stats.
 Identities = 25/249 (10%), Positives = 66/249 (26%), Gaps = 14/249 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTW---- 143
           +D +  +   ++   K  G    +++G  +  +    H D +   +   +          
Sbjct: 31  VDENHNVVYCNQSAEKMFGWRRDEIVGRDVSPLIPDPHHDMHRQYVQRYVDTGIARVIGE 90

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK---RL 200
             +      +GT    P++++    YS +R         ++       +     +    L
Sbjct: 91  ARECRGQRKDGTTF--PVEIS----YSLSRTGGHLFFTAVIRDITQRKEMEREVRFMETL 144

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
                 +  I                Q      LR   K          +   L+T    
Sbjct: 145 ADVGKAVAHIGHEIRKPLVLIGGFAGQVERCDSLRASEKDRRKLRIIMDEIKRLETLLSS 204

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
           L           +   ++N    +  +    +  + K   +     +   +    ++ E 
Sbjct: 205 LRVLTRPPSSSHKSSLSLNAVVESTLELLTPMLKDRKIQLKKDLSADRIMVHGDPNQLEQ 264

Query: 321 LTPETVDKC 329
           +    +D  
Sbjct: 265 VFLNLLDNA 273



 Score = 42.7 bits (99), Expect = 0.26,   Method: Composition-based stats.
 Identities = 9/136 (6%), Positives = 26/136 (19%), Gaps = 15/136 (11%)

Query: 317 EGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
             E +  + +         V  + N+ Y N S   +  ++  + +              +
Sbjct: 12  PSEAIIRDILASVTDAVITVDENHNVVYCNQSAEKMFGWRRDEIVGRDVSPLIPDPHHDM 71

Query: 376 SDN--------------NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                               +     R D T           +               + 
Sbjct: 72  HRQYVQRYVDTGIARVIGEARECRGQRKDGTTFPVEISYSLSRTGGHLFFTAVIRDITQR 131

Query: 422 NQFPENMPQNGIEPED 437
            +    +       + 
Sbjct: 132 KEMEREVRFMETLADV 147


>gi|186682103|ref|YP_001865299.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186464555|gb|ACC80356.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 1559

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 75/260 (28%), Positives = 132/260 (50%), Gaps = 13/260 (5%)

Query: 562  SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
            ++ ++   +L  A+  AE  S  KS FLA +SHEIRTP+ A++G + ++         N 
Sbjct: 876  TQQRR---ELEVARHQAELASKTKSAFLANMSHEIRTPMNAVLGMTGLMLETPL----NS 928

Query: 622  RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
               ++   I  SG+ +L ++N++LD+SK+E+G+M L      L   + E + L+   A+ 
Sbjct: 929  EQQDFIETIRISGDALLSLINEILDLSKLEAGEMALETLDFDLSTCLEEVLELLAPSAHN 988

Query: 682  KRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT----SNEE 736
            K + I      N+P ++  D   ++QI +N++SNAI FT S G++++         +   
Sbjct: 989  KGLEIAALIYPNVPTQLQGDAGRLRQILMNLISNAIKFT-SNGEVVVRAELRSLSSTTAT 1047

Query: 737  VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
            +   + DTG+G+T  +  +   PF Q+  S   +  GTGLGL + K +V    G+  + S
Sbjct: 1048 IYFAITDTGLGITFEDQCRLFTPFTQVDASNTRKYGGTGLGLAICKQLVSLMGGEIGVES 1107

Query: 797  TPAKGTLIEIIFPLYDTSHP 816
               KG+            +P
Sbjct: 1108 RLGKGSKFWFEVTFAQQLYP 1127



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 22/155 (14%), Positives = 57/155 (36%), Gaps = 10/155 (6%)

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
            +    I  E  + ++ +  +  E   + ++L+  S  + +++ +G I+  N+A  +  G
Sbjct: 376 AIVYYFIYREVKERKLTEETLNQERNFISAVLDTASALVIVLDTQGQIVRFNQACEQTTG 435

Query: 487 YPVEDILRKPFTVFL-EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
           Y  +++  + F            +     ++ + +  +  E   +      +L+S    I
Sbjct: 436 YSFDEVRGRHFWNLFLIPEQVEPVKAVFEQLRTGEAPKEYENYWVAKDGSLRLISWANAI 495

Query: 546 KKLPFS--SCYSLTMHDISE-------WKQEKNKL 571
            +           T  DIS+        K+ +  L
Sbjct: 496 LQDHEGCVEYIVATGIDISDAYDELRLRKRAEQHL 530



 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/156 (12%), Positives = 49/156 (31%), Gaps = 4/156 (2%)

Query: 66  NYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV-SDI 124
             L+ E  F+   +         +D  G +   ++   +T G    ++ G    ++    
Sbjct: 394 ETLNQERNFISAVLDTASALVIVLDTQGQIVRFNQACEQTTGYSFDEVRGRHFWNLFLIP 453

Query: 125 LHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNR--EFSGFRGFG 182
             ++P   + + L+           W  +  +L +     A+ +       E+    G  
Sbjct: 454 EQVEPVKAVFEQLRTGEAPKEYENYWVAKDGSLRLISWANAI-LQDHEGCVEYIVATGID 512

Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVE 218
           I          +   + L  ++S    + +  +  E
Sbjct: 513 ISDAYDELRLRKRAEQHLKAQYSTTRVLAESTTISE 548


>gi|300856127|ref|YP_003781111.1| putative Signal transduction histidine kinase [Clostridium
           ljungdahlii DSM 13528]
 gi|300436242|gb|ADK16009.1| predicted Signal transduction histidine kinase [Clostridium
           ljungdahlii DSM 13528]
          Length = 600

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 94/364 (25%), Positives = 172/364 (47%), Gaps = 25/364 (6%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           K+  E  +L ++L + S+GI  ++    I++ N +  +L      +   K   + L  N 
Sbjct: 253 KLFEEKTKLSNVLTSMSEGILSLDTNFHIININHSTLELLSLKNIESDTKVNEILLNLN- 311

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
              +       +S D +++  K  L       +  ++  + ++       + + D+SE +
Sbjct: 312 ---IIEEFNFTISNDTKKSTVKEYLNKVLNFSISPIKNNLNQVIGG---VILIQDVSEKE 365

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + +                + DF++ VSHE RTPLT I G  E I +   G        +
Sbjct: 366 KLE--------------QMRKDFISNVSHEFRTPLTVIKGNLESIVD---GITQPECIQD 408

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
               +    N +  +V DLL++SK+ESGK+ + F  + ++  V++ I  ++   + K I 
Sbjct: 409 TCITLLNETNRLERMVKDLLNLSKLESGKLEIDFNELDINMLVNDTIRSIKPLIDAKSID 468

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           ++ S  NN+P + +D   +KQ+ +  L N I F+ + G++ IS + + NE + + + D G
Sbjct: 469 LQLSLQNNLPPLFSDYDKLKQLLIIFLDNGIKFSQNKGKLKIS-SCSDNENICITIEDNG 527

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+   E++   + F +   S+     GTGLGL +AK +V    G F I S   KGT I 
Sbjct: 528 IGIPEDEIQYLGEKFFKADKSRTSNAGGTGLGLSIAKRLVKVLNGHFSIESELTKGTRIT 587

Query: 806 IIFP 809
           I FP
Sbjct: 588 ISFP 591


>gi|221065883|ref|ZP_03541988.1| histidine kinase [Comamonas testosteroni KF-1]
 gi|220710906|gb|EED66274.1| histidine kinase [Comamonas testosteroni KF-1]
          Length = 936

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 89/380 (23%), Positives = 162/380 (42%), Gaps = 25/380 (6%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
           ++ +        +++++       +NR   +L T      L  +   + L          
Sbjct: 332 RKLLTPARSNFLALVDS-----VTLNR--KLLKTAPVGLALLRHNENEPLLSNDLAHAWL 384

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
            T     H         +   LE        + +++                 T++D+++
Sbjct: 385 KTERDWRHIAASTNLNGIGGDLELE------DGRVVQRTFTPMTYCGGPAVLCTINDVTK 438

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            KQ +  L +A + AE  +  K+ FL  +SHEIRTPL  I+G  E++           + 
Sbjct: 439 LKQTELSLLNAMQAAEAANQAKTLFLTTMSHEIRTPLYGILGTLELLS----LTGATEQQ 494

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            +Y + +  S  ++L  +ND LD+S+IE+G M L   P++L E +   +S   + A  K 
Sbjct: 495 QQYLDTLRHSSTVLLSTLNDTLDLSRIEAGYMTLERRPLALLEVLDNVVSTFCVRAERKN 554

Query: 684 ILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVI 738
           + +  + + N P  +L D+  ++QI  N++SNAI FT SG  I++    T  E    ++ 
Sbjct: 555 LRLYCTASVNTPLLVLGDVTRLRQILDNLVSNAIKFTVSG-HIVLRLRSTPVEKSHVQLE 613

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
             V DTG+G+    L +   P+ +  +      +GTGLGL +   +     G+    S  
Sbjct: 614 FEVADTGIGIAAEHLPQLFDPYFRTDSDIDQLIQGTGLGLSICSRLSQMMGGELAATSEL 673

Query: 799 AKGTL--IEIIFPLYDTSHP 816
             GT    ++  P+   S P
Sbjct: 674 GIGTRISFKVTLPIAAESIP 693


>gi|307825937|ref|ZP_07656152.1| multi-sensor signal transduction histidine kinase [Methylobacter
           tundripaludum SV96]
 gi|307733056|gb|EFO03918.1| multi-sensor signal transduction histidine kinase [Methylobacter
           tundripaludum SV96]
          Length = 907

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 81/591 (13%), Positives = 188/591 (31%), Gaps = 69/591 (11%)

Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS----HRNHPSLSAYFDEGENLTPETV 326
            +   +  + +         ++ ++S E     +         +      E E      +
Sbjct: 330 MEARLNRPDGSLLPCLIDSNSITDDSGERIYSFALFSDISQRIADETELRESETQFRALL 389

Query: 327 DKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
           +  P P  +  S+G +   N     L  Y   + +     +  LL          ++   
Sbjct: 390 ESTPDPMVILNSYGLIGIVNHQAEDLLGYSKNELLGEP--IDILLTDESHHIFAKLRENY 447

Query: 386 LYRSDRTCIAASARLHTIQWNRENS-LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
           +  +    +     L           + ++F P        + +       +    ++ +
Sbjct: 448 IGNAQAGPVGKQQELRVKTKEGREIPVEVSFSPI----NTSKGLLIAAALRDISQRKMAE 503

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
             +    ++  ++  +TS+ + + +  G     N A   +FG   ++             
Sbjct: 504 SALARSEIKFRTLYVSTSEAVMLWDERGFF-DCNDATLAIFGCATKEEFYTKQPSDFSPP 562

Query: 505 TPSVM-------NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS-- 555
                          + + L         +         K     +++  +         
Sbjct: 563 QQPCGGNSSDCSKEAIAKALEQGSHSF--EWLHRRIDNGKDFPAEVVLSSMELDGKLVLL 620

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSH-----KSDFLARVSHEIRTPLTAI------- 603
            T+ DI++ KQ + KL    +   +              A V+HE+  P+  +       
Sbjct: 621 GTVRDITDRKQYEEKLLQLAEAKSQLLQSEKMATIGQLAAGVAHELNNPIAFVYSNLGTF 680

Query: 604 ----------------------IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
                                 +     ++ ++          E           +  IV
Sbjct: 681 ESYVKDILEITAACQTSLHHDDLANVIALQAEKNFEYLKSDIFELITESKDGITRMRKIV 740

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701
            DL + S++        ++   L + +   +++V      K ++I+  +++++P+I    
Sbjct: 741 EDLKNFSRVG----EPDWQSADLQKGLESTLNIVWNELKYKCVVIK-HYSDDLPQIRCIA 795

Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTH--TSNEEVILRVRDTGVGMTNYELEKAMKP 759
             + Q+ +N+L NA H     G+I I+T    + N  V + + DTG G+    L++   P
Sbjct: 796 SQLNQVFMNLLVNAGHAIEKKGEITITTRVCPSDNTAVQVLITDTGAGIPPENLKRIFDP 855

Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           F          G+GTGLGL +   ++  + G   + ST   G+   I  P+
Sbjct: 856 FFTTKP----VGQGTGLGLSITWGIIAKHHGTIEVNSTVGIGSTFTITLPV 902



 Score =  124 bits (311), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 36/258 (13%), Positives = 80/258 (31%), Gaps = 22/258 (8%)

Query: 319 ENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
                  +         +   G +   N + L+L        +          D   +  
Sbjct: 266 RTRINAILASTSQGFVMMDRDGIITECNQAMLVLMGTDKQSLVGRFYRGLISTDNSSVMQ 325

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
            N      L R D + +      ++I                  +   E +    +  + 
Sbjct: 326 ANYRMEARLNRPDGSLLPCLIDSNSIT-----------------DDSGERIYSFALFSDI 368

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
                ++ ++     Q  ++LE+T D + I+N  G+I   N     L GY   ++L +P 
Sbjct: 369 SQRIADETELRESETQFRALLESTPDPMVILNSYGLIGIVNHQAEDLLGYSKNELLGEPI 428

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTL--EKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555
            + L   +  +        +       +  ++     TKE + + + +    +  S    
Sbjct: 429 DILLTDESHHIFAKLRENYIGNAQAGPVGKQQELRVKTKEGREIPVEVSFSPINTSKGLL 488

Query: 556 --LTMHDISEWKQEKNKL 571
               + DIS+ K  ++ L
Sbjct: 489 IAAALRDISQRKMAESAL 506



 Score = 75.4 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 45/485 (9%), Positives = 122/485 (25%), Gaps = 72/485 (14%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D  G + E ++ +   +G     ++G     +    +    + +         +  +  
Sbjct: 283 MDRDGIITECNQAMLVLMGTDKQSLVGRFYRGLISTDN----SSVMQA-----NYRMEAR 333

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           L   +G+ L   ID  +  I   + E      F +              +  + +F  L 
Sbjct: 334 LNRPDGSLLPCLIDSNS--ITDDSGERI--YSFALFSDISQRIADETELRESETQFRALL 389

Query: 209 EIKKGHSS----------VEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
           E                 V  +  D+             +    LT+   H    L+   
Sbjct: 390 ESTPDPMVILNSYGLIGIVNHQAEDLLGYSKNELLGEPID--ILLTDESHHIFAKLRENY 447

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK--ESFEYLSHRNHPSLSAYFD 316
                +      ++    T    +   +  F  +  +     +             +   
Sbjct: 448 IGNAQAGPVGKQQELRVKTKEGREIPVEVSFSPINTSKGLLIAAALRDISQRKMAESALA 507

Query: 317 EGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
             E               ++     F  N + L +    + ++             P+  
Sbjct: 508 RSEIKFRTLYVSTSEAVMLWDERGFFDCNDATLAIFGCATKEEFYTKQPSD--FSPPQQP 565

Query: 377 -------------------DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
                               +++ + +     +     A   L +++ + +  L  T   
Sbjct: 566 CGGNSSDCSKEAIAKALEQGSHSFEWLHRRIDNGKDFPAEVVLSSMELDGKLVLLGTVRD 625

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
                Q+ E +            ++ + K ++   +  + +   + G+A           
Sbjct: 626 ITDRKQYEEKLL-----------QLAEAKSQLLQSEKMATIGQLAAGVAH-------ELN 667

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE------KITLG 531
           N            +   K           S+ +  L  +++L   +  E         + 
Sbjct: 668 NPIAFVYSNLGTFESYVKDILEITAACQTSLHHDDLANVIALQAEKNFEYLKSDIFELIT 727

Query: 532 STKEE 536
            +K+ 
Sbjct: 728 ESKDG 732



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 45/296 (15%), Positives = 87/296 (29%), Gaps = 88/296 (29%)

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
             ++ +IL +TS G  +++R+GII   N+A+  L G   + ++ + +   +  +  SVM 
Sbjct: 266 RTRINAILASTSQGFVMMDRDGIITECNQAMLVLMGTDKQSLVGRFYRGLISTDNSSVMQ 325

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQ 566
                                +  +  LL   I    +   S           DIS+   
Sbjct: 326 A------------NYRMEARLNRPDGSLLPCLIDSNSITDDSGERIYSFALFSDISQRIA 373

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
           ++ +L             ++ F A                   +      P+        
Sbjct: 374 DETELR----------ESETQFRA-------------------LLESTPDPMVILNSYGL 404

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
              ++           DLL  SK               +E + E I ++           
Sbjct: 405 IGIVNHQAE-------DLLGYSK---------------NELLGEPIDIL----------- 431

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
                +    I A    +++   N + NA    P G Q  +        E+ + V 
Sbjct: 432 ---LTDESHHIFA---KLRE---NYIGNA-QAGPVGKQQELRVKTKEGREIPVEVS 477


>gi|323491190|ref|ZP_08096376.1| hybrid sensory histidine kinase BarA [Vibrio brasiliensis LMG
           20546]
 gi|323314558|gb|EGA67636.1| hybrid sensory histidine kinase BarA [Vibrio brasiliensis LMG
           20546]
          Length = 929

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 87/341 (25%), Positives = 155/341 (45%), Gaps = 19/341 (5%)

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
           F Y +   + +P +        ++++      L + +   +             +++ + 
Sbjct: 191 FAYRLMYDVTRPISHM-----KNMVDRIRRGHLDVRIEGKMHGELDSLKNGINAMAVSLS 245

Query: 545 IKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
              +           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTPL
Sbjct: 246 EYHVEMQHSIDQATSDLRETLEQLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPL 305

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
             +IGF+  +              +Y   I++S N +L+I+ND+LD SK+E+GK+ L   
Sbjct: 306 NGVIGFTRQMLKTTLTN----SQTDYLQTIEKSANNLLNIINDILDFSKLEAGKLALENI 361

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFT 719
           P     ++ E +SL    A+EK + +       IP  ++ D   ++Q+  N++ N+I FT
Sbjct: 362 PFDFQGSLEEVVSLQATSAHEKGLELTLKIDPKIPAGLVGDPLRIQQVLTNLVGNSIKFT 421

Query: 720 PSGGQIIISTTHTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
             G  I IS    S +    E+   VRDTG+G++  +  +  + F Q   S   R  GTG
Sbjct: 422 ERG-NIDISVEMRSQKDDLVELQFMVRDTGIGISERQQSQLFQAFSQADASISRRYGGTG 480

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           LGL + + +V    G+  + S   +G+       L  T  P
Sbjct: 481 LGLVITQKLVSQMGGEISLTSRLHQGSTFWFTLRLSATDMP 521


>gi|313683119|ref|YP_004060857.1| hpt sensor hybrid histidine kinase [Sulfuricurvum kujiense DSM
           16994]
 gi|313155979|gb|ADR34657.1| Hpt sensor hybrid histidine kinase [Sulfuricurvum kujiense DSM
           16994]
          Length = 758

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 88/314 (28%), Positives = 141/314 (44%), Gaps = 19/314 (6%)

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQ 566
            +    L  + +   R  L+        ++ + +  +        S       D    K+
Sbjct: 86  ELRADELFLLCTRFKRSVLDATYRLGVNDQSVFA-SVSYLFDQNFSGVLKLYTDTIYQKE 144

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
           ++         A   S  K  FL+ +SHEIRTPL AI+GF  +++++      NPRY +Y
Sbjct: 145 QE---------AINASKAKEYFLSNMSHEIRTPLNAILGFVSLLRDE----TTNPRYQQY 191

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
            + I  SG  +L I+ND+LD SK+ SG+  +  +P ++ + +S  + L    AN K I +
Sbjct: 192 LDIISNSGENLLHIINDILDFSKLRSGEFMIDPQPFNIHDEISHTMELFVPGANSKNITL 251

Query: 687 RTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
            +     I   I+AD   +KQI  N LSNAI F+   G I +         + L VRD G
Sbjct: 252 TSFIDPTIAYEIVADALRIKQIVGNFLSNAIKFSHHAGAIHVEARC-DEGILSLSVRDQG 310

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+   + E+    F Q          G+GLGL + K +     G   + ST  KG+L  
Sbjct: 311 IGIVLADQERIFDAFSQAQEGSMKVNGGSGLGLSICKQLAHHMGGVIELESTVGKGSLFT 370

Query: 806 IIFPLYDTSHPHDC 819
           +  P+      H+C
Sbjct: 371 LKIPVVVN---HEC 381


>gi|226950175|ref|YP_002805266.1| sensory box histidine kinase [Clostridium botulinum A2 str. Kyoto]
 gi|226840994|gb|ACO83660.1| sensory box histidine kinase [Clostridium botulinum A2 str. Kyoto]
          Length = 702

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 83/398 (20%), Positives = 160/398 (40%), Gaps = 17/398 (4%)

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILST 477
              ++  E +          D   ++   E     +  +++     +A+++  +      
Sbjct: 282 PIMDENNEILYTISSIKNVTDLIESQIISEERAEFIKYVVDCIELPLAVLDYPDLTYRLV 341

Query: 478 NRAVSKLFGYPV-----EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ--TLEKITL 530
           N    +L           ++L         +         L ++    +++     K  +
Sbjct: 342 NERYEELVERLHTKKIKGNLLGNTVENIFRKEEFKEQLEVLQKMKDGTIKEYTFSPKKFI 401

Query: 531 GSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
             + EE+   +R I  +        +   D++E  +   +L       EK +  K +F  
Sbjct: 402 LQSGEERFFKVRYIYHETKNKKRVHIHGSDVTEELKSNLEL-------EKVNKLKDEFFT 454

Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650
            +SHE+RTPLT I    + +    +    N    +    I+++   +L ++N++LDISK 
Sbjct: 455 IISHELRTPLTIIYSSLQ-LAYDIYPEDINLNIDKILKRINQNTARLLKLINNILDISKA 513

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710
           E+G + L+ E   +       ++ +  YAN K I +          +  D    ++I LN
Sbjct: 514 EAGFLTLNNEYFDIVLETENIVNSITNYANSKNINLIFDTTKEEEEVWIDKDKYERILLN 573

Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           +LSNA+ FTP    I ++     N    L V+D G G+   +++     F Q+ +S    
Sbjct: 574 LLSNAVKFTPENKSIYVTLKIYKNNF-KLIVKDEGRGIPKEKIDCIFNRFAQVNSSLSRS 632

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            EGTG+GL L K +VD   G+  ++S   KGT   +  
Sbjct: 633 AEGTGIGLSLVKKIVDLMDGEIKVYSILGKGTTFTVKI 670


>gi|46447515|ref|YP_008880.1| putative two-component sensor histidine kinase phoR [Candidatus
           Protochlamydia amoebophila UWE25]
 gi|46401156|emb|CAF24605.1| putative two-component sensor histidine kinase phoR [Candidatus
           Protochlamydia amoebophila UWE25]
          Length = 589

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 76/366 (20%), Positives = 148/366 (40%), Gaps = 33/366 (9%)

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
           +  E  +  +ILE+  +G+  ++R   I   N    K  G    D++ + F+        
Sbjct: 245 LTQERDEKEAILESLVEGVIAVDRTMCIAYANHMAIKFIGLNQLDLIGQKFSSL----NQ 300

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQ 566
                 L +    +   T          E K L L I+      +S   L + D      
Sbjct: 301 EKYLTLLRQCQEEEKPLTDTLEINI---EGKKLYLDIVAAPKRNNSGAILVLQD------ 351

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
                   K    K    + DF+A  SHE++TP+T I GF+E + +     L      E 
Sbjct: 352 --------KTAHYKIFEMRRDFIANASHELKTPITIIRGFAEALYDNPG--LPQDIQNEI 401

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIE---SGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
              I R+   +  ++ DLL ++ IE   S +++L      L +  +   S++     +  
Sbjct: 402 TTKIVRNCKRMTALIKDLLTLADIENIPSSRLSL----CDLFDLTTRCQSMLHEIFPDAE 457

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
           + I TS  ++  +++ D    +   +N++ NA  ++     I +   +  ++ +++ V D
Sbjct: 458 VNIETS--SDDIKLIVDEDLFELAIMNLIENAAKYSSRPAHIFVKL-NDLSDHIVIEVSD 514

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
            G+G+   + E     F  +  +   +  G+GLGL + K +++ + G   + S   KG+ 
Sbjct: 515 QGIGIPLADQEHIFDRFYTVDKAHSQKMGGSGLGLSIVKTIIEKHFGTITLKSELGKGST 574

Query: 804 IEIIFP 809
             I  P
Sbjct: 575 FTITLP 580


>gi|307825601|ref|ZP_07655819.1| response regulator receiver modulated diguanylate cyclase
            [Methylobacter tundripaludum SV96]
 gi|307733487|gb|EFO04346.1| response regulator receiver modulated diguanylate cyclase
            [Methylobacter tundripaludum SV96]
          Length = 1640

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 73/265 (27%), Positives = 121/265 (45%), Gaps = 10/265 (3%)

Query: 547  KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
            ++         + D  +  +   +L      A      KS FLA +SHEIRTP+ AI+G 
Sbjct: 826  RVRQLQRIQANLED--QVAKRTEELQDMTLQALAAVQVKSAFLANMSHEIRTPMNAIMGM 883

Query: 607  SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
            + ++           +   Y   I+ S   +L I+ND+LD SK+E+GK+ L +    L+ 
Sbjct: 884  THLVLLTDLTA----KQRNYLYKINSSAKWLLGILNDILDFSKLEAGKLKLEYTEFRLET 939

Query: 667  AVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-- 723
             +     +     N K++ +R     ++P  ++ D   + Q+ LN+LSNAI FT  G   
Sbjct: 940  VMQYLDDVTSSLLNSKQLALRFEVDPDVPTTLIGDPLRLGQVLLNLLSNAIKFTEKGSVT 999

Query: 724  -QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
             Q+ +  +      +   V DTG+G+   +       F Q  +S   +  GTGLGL ++K
Sbjct: 1000 LQVQLQASDAKEACLCFSVIDTGIGLNEEQQSHLFAAFNQADDSTTRKYGGTGLGLSISK 1059

Query: 783  AMVDANMGKFYIFSTPAKGTLIEII 807
             +V+A  G   I S    G+    I
Sbjct: 1060 ELVEAMGGTINIESRLGFGSTFYFI 1084


>gi|282889887|ref|ZP_06298425.1| hypothetical protein pah_c005o020 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500210|gb|EFB42491.1| hypothetical protein pah_c005o020 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 587

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 77/367 (20%), Positives = 142/367 (38%), Gaps = 28/367 (7%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            +  E  +  +ILE+  +G+  ++   I+   N    +    P   ++  PF++      
Sbjct: 244 NLTSERKEKETILESLIEGVIAVDTNMIVTYANNRACEWLKLPANQLVGNPFSI----TK 299

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
            S     L      +   T        T +EK   L +I      ++   L + D     
Sbjct: 300 QSKCYALLAACQQDNHPLTDNIQI--KTPQEKFY-LDVIAAPKTDNTGAILVLQD----- 351

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
                    K    K    + DF+A  SHE++TP+T I GF+E + +     L +    E
Sbjct: 352 ---------KSSHYKILEMRKDFIANASHELKTPITIIHGFAEALNDNP--ELPSNVRKE 400

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
               I R+   +  ++ DLL IS IE    + H     L + +      ++  + + +I 
Sbjct: 401 VLGKIVRNCQRMATLIKDLLTISDIEHIPSS-HLVQCDLFQLIESCAGTIKDMSPQAKIT 459

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +             D   ++   +N+L NA  ++    +I I+     N    L + D G
Sbjct: 460 L---IKTEDVTATVDADLIEMAIINLLENAAKYSKGPAKITITLAKEDN-MAKLTISDKG 515

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+   +LE   + F  +  +   +  G+GLGL +   +++ + GK    S   KGT   
Sbjct: 516 IGIPQQDLEHIFERFYTVDKAHSQKMGGSGLGLSIVHTIIEKHFGKISAESELDKGTTFT 575

Query: 806 IIFPLYD 812
           I  P+  
Sbjct: 576 IFLPIQR 582


>gi|238917554|ref|YP_002931071.1| two-component system, unclassified family, sensor kinase
           [Eubacterium eligens ATCC 27750]
 gi|238872914|gb|ACR72624.1| two-component system, unclassified family, sensor kinase
           [Eubacterium eligens ATCC 27750]
          Length = 854

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 99/431 (22%), Positives = 184/431 (42%), Gaps = 19/431 (4%)

Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI--NKRKME 448
                    +  I+    + +A+       A Q         +       R   +++  E
Sbjct: 271 GFDNWGLISMVPIRIANSSIVAVQQRTVWMAMQIGGLFFIVAVVVLYTYYRRYISEKNHE 330

Query: 449 IEVMQ-LCSILE-ATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           I     L SI+     D   +++  +   L  +R + ++ G   ++      T   ++  
Sbjct: 331 ISRRDILFSIMAKNLDDVYIMLSWGDWRKLYVSRNIERVLGLKNDEYS--ELTDEFKKLD 388

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---YSLTMHDIS 562
                    +I  LD+ +++         +     L                 + + D +
Sbjct: 389 KKGEIPDWNDITGLDIGESVVNEYWIKPADSNEYRLFKQGCYHMDKDGDDVLVVIISDRT 448

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
             +Q +  +  A   AE  +  KS FLA +SH+IRTP+ AI+GFS+++      P    +
Sbjct: 449 YEQQIRGHMEDALHTAEAANLAKSQFLANMSHDIRTPMNAIVGFSQLLLRHEKNP---DK 505

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             +YA  I  S   +L+++ND+LD+SKIESG   L+   V++ + V E  ++++  A +K
Sbjct: 506 VKKYAEKIVISSQHLLNLINDVLDMSKIESGNTTLNLSDVNIADIVQEIDNIIRPQAKQK 565

Query: 683 RILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-----TSNEE 736
           +  +  S  N     I  D   + QI LNILSNA+ +TP  G I           +   +
Sbjct: 566 KQTLIISSDNVEYGWIKTDKLRLNQILLNILSNAVKYTPEYGMITFEIRGMNHTGSQFAK 625

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
              ++ D G+GM++  +++  KPF +  N+     +GTGLG+P+ K ++D   G   + S
Sbjct: 626 YKFKISDNGIGMSDGYIKEIFKPFTREDNNVTDNVQGTGLGMPITKNLIDLMGGTIKVKS 685

Query: 797 TPAKGTLIEII 807
              +G+  E+ 
Sbjct: 686 KKGEGSTFEVT 696


>gi|170696954|ref|ZP_02888050.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ambifaria
           IOP40-10]
 gi|170138128|gb|EDT06360.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ambifaria
           IOP40-10]
          Length = 530

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 73/371 (19%), Positives = 152/371 (40%), Gaps = 23/371 (6%)

Query: 453 QLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
           +  +++ + +D  + +++  G I + N    ++ G+  ++I+   F+ F   +  +    
Sbjct: 30  RFQTVVASITDYAVFMLDPHGNIATWNAGAERIKGFRTDEIIGSHFSRFYPADAIAAGRP 89

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQE 567
                 +       +  +    K+       + I  +         +     D++E K+ 
Sbjct: 90  AHALEAAAAYGH-FQDESWRVRKDGSRFWASVTITAVRDESHQLRGFIKITRDMTERKRV 148

Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRT---PLTAIIGFSEVIKNQRFGPLGNPRYI 624
           +          E  +     F+A ++HE+R    PL   IG  + + +   GP       
Sbjct: 149 EE--------LEAATRRLDVFIATLAHELRNQLAPLRHTIGILQGLPSSELGPA----LT 196

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           +  +  DR    ++ +V+DLLDI +I+S K+ L   P+++ + V  ++  +Q   + +  
Sbjct: 197 QCKDIADRQIEQLVRLVDDLLDIGRIKSDKVELKKAPLNVRDIVYRSVQGIQPKVDARGQ 256

Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744
            I          +  D   + Q+  N+L NA  ++P+G +I I      N  V + V D 
Sbjct: 257 QIIVRLPPGPVIVHGDDVRLVQVLYNLLDNASKYSPNGERIEIHVRTEPN-VVAIEVVDY 315

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTL 803
           G+G+     E    PF Q   +++    G GLGL ++K  VD + G     S     G+ 
Sbjct: 316 GIGIVPGAHESIFDPFEQENAAERHAPGGLGLGLAISKKFVDLHGGSITADSAGVGAGST 375

Query: 804 IEIIFPLYDTS 814
             +  P+  ++
Sbjct: 376 FTVRLPVAASN 386



 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/342 (10%), Positives = 88/342 (25%), Gaps = 11/342 (3%)

Query: 48  SFEQ-SNFTDQNQESVSNTNYLDSENTFVFDPIPRTVR--FTWNIDAHGYLKEISEELPK 104
           + +Q    +     +      LD    F F  +  ++     + +D HG +   +    +
Sbjct: 2   TPDQPQPTSSDQPPAQHEQPLLDRYAEFRFQTVVASITDYAVFMLDPHGNIATWNAGAER 61

Query: 105 TIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ--NTWYGKTTLWPIEGTNLYVPID 162
             G    ++IG           I        L        +  ++     +G+  +  + 
Sbjct: 62  IKGFRTDEIIGSHFSRFYPADAIAAGRPAHALEAAAAYGHFQDESWRVRKDGSRFWASVT 121

Query: 163 LAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKY 222
           + A  +   + +  GF    I            L     +    +  +     +      
Sbjct: 122 ITA--VRDESHQLRGF--IKITRDMTERKRVEELEAATRRLDVFIATLAHELRNQLAPLR 177

Query: 223 DIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQ 282
                    P   +   ++   +    + + L      LL        + E        +
Sbjct: 178 HTIGILQGLPSSELGPALTQCKDIADRQIEQLVRLVDDLLDIGRIKSDKVELKKAPLNVR 237

Query: 283 YTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NL 341
               +    +Q       + +  R  P       +   L     +          +G  +
Sbjct: 238 DIVYRSVQGIQPKVDARGQQIIVRLPPGPVIVHGDDVRLVQVLYNLLDNASKYSPNGERI 297

Query: 342 FYANPSFLLLTKYKSVD-DIEIAGGLSTLLDAPKLSDNNAIK 382
                +   +   + VD  I I  G    +  P   +N A +
Sbjct: 298 EIHVRTEPNVVAIEVVDYGIGIVPGAHESIFDPFEQENAAER 339


>gi|107102995|ref|ZP_01366913.1| hypothetical protein PaerPA_01004064 [Pseudomonas aeruginosa PACS2]
          Length = 918

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 77/257 (29%), Positives = 133/257 (51%), Gaps = 8/257 (3%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I+  K+E  +   A + A  E+  KS FLA++SHEIRTPL  ++G  +++++        
Sbjct: 384 INALKEEGFRSRQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPLDRG-- 441

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
                Y   I  SG+ ++ ++ND+LD ++IESGK++L      L+E +S+ ++L    A 
Sbjct: 442 --QAAYVETIASSGSALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAV 499

Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVI 738
           EKR+ +       +PR +  D   ++Q+ +N+LSNA+ FT  G   + +           
Sbjct: 500 EKRLRLHLGLDRGVPRRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVRVQRRFDEGGRER 559

Query: 739 L--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           L   V D+G+G++    +   + F Q  +S   R  G+GLGL +++ +V    G+  + S
Sbjct: 560 LLYSVSDSGIGISAQAQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSS 619

Query: 797 TPAKGTLIEIIFPLYDT 813
            P KGT   +  PL   
Sbjct: 620 EPGKGTQFSVDLPLSPA 636


>gi|302672251|ref|YP_003832211.1| two component system histidine kinase/response regulator hybrid
           protein [Butyrivibrio proteoclasticus B316]
 gi|302396724|gb|ADL35629.1| two component system histidine kinase/response regulator hybrid
           protein [Butyrivibrio proteoclasticus B316]
          Length = 1031

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 86/366 (23%), Positives = 162/366 (44%), Gaps = 18/366 (4%)

Query: 457 ILEATSDGIAIINREGII-LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV-----MN 510
           ++E  +D +A+++ +  I       V  + G P+ DI ++      + +         + 
Sbjct: 390 VVERNNDILAVVDGDSYIPSFVTSNVEDVLGIPLTDI-QEDIRNLDKAHDQEKTDGINIE 448

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY--SLTMHDISEWKQEK 568
               +          ++I L + K  + L  R I            ++ ++D ++  +  
Sbjct: 449 AVFNKCKETGEAFIQDEIKLENIKTGEHLYYRGITVTTFDDGGQRTAIALYDRTQEIRRN 508

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
           ++L  A   AE  +  K+ FLA +SH+ RTP+ AI GF  ++ ++        +  EY +
Sbjct: 509 HQLQEALNAAETANKAKTSFLANMSHDFRTPMNAITGF-NLLIDKH--AEEPDKVKEYTH 565

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I  +   +L ++ND+LD+SKIESGK  L  + V +   + E  S++   A  K      
Sbjct: 566 KISLASQNLLSMLNDVLDMSKIESGKTTLDIKEVPIGLLLEEINSVISFQAKNKNQEYIV 625

Query: 689 SFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIIST-----THTSNEEVILRVR 742
              +    I + D + + +I +NIL NAI +TP GG+I  +      +    + V   ++
Sbjct: 626 KIEDMQHDIFMGDKQRINEILMNILGNAIKYTPEGGRIEFTINESPSSSEGFQNVTFTIK 685

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G+GM     +K    F +         +GTGLG+ + K++V+   G   + S   KG+
Sbjct: 686 DNGIGMKPEYKDKIFDAFSREEKGATKTIQGTGLGMAITKSLVELMGGTIRVDSEEGKGS 745

Query: 803 LIEIIF 808
              +  
Sbjct: 746 TFIVNL 751


>gi|209525666|ref|ZP_03274203.1| histidine kinase [Arthrospira maxima CS-328]
 gi|209493835|gb|EDZ94153.1| histidine kinase [Arthrospira maxima CS-328]
          Length = 522

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 76/263 (28%), Positives = 135/263 (51%), Gaps = 10/263 (3%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           + +++  +L  AK+IA+  +  KS+FLA +SHE+RTPL AI+GF++++   +      P 
Sbjct: 106 QTQEQARQLQQAKEIADAANRAKSEFLANMSHELRTPLNAILGFAQLMSTNQNLA---PE 162

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             ++   I+RSG  +L ++ND+L++S+IE+G   L      L + +       +L A  K
Sbjct: 163 KRQHIEIINRSGEHLLGLINDILEMSRIEAGGATLQVNAFDLYDFLKSLEDFFKLRATSK 222

Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VI 738
            + +       + R I AD + ++Q+ +N+L NAI FT  G  + +  +H + +    + 
Sbjct: 223 NLHLIFERPQGLIRYIKADDKKLRQVLINLLVNAIKFTDEGS-VTVRVSHQNQDTSDILK 281

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
             V DTG+G+   + E   + F Q         EG+GLGL +A+  V    G+  + S  
Sbjct: 282 FEVEDTGLGIAPEDCEGLFEAFAQTETGLN-ASEGSGLGLAIAQQFVTLMGGEITVRSCL 340

Query: 799 AKGTLIEIIFPLYDTSH-PHDCI 820
            +G+      P+  T   P+  I
Sbjct: 341 NQGSTFSFTIPVQRTEDKPNPAI 363


>gi|109900024|ref|YP_663279.1| periplasmic sensor hybrid histidine kinase [Pseudoalteromonas
           atlantica T6c]
 gi|109702305|gb|ABG42225.1| periplasmic sensor hybrid histidine kinase [Pseudoalteromonas
           atlantica T6c]
          Length = 903

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 84/253 (33%), Positives = 136/253 (53%), Gaps = 11/253 (4%)

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           SE +    +L  +K  AE+ +  KS FLA +SHEIRTP+  IIG  +V+      P    
Sbjct: 370 SEQEMLNAELVESKHKAEQATVSKSMFLANMSHEIRTPMNGIIGLLDVVMKSDLTPT--- 426

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
              ++ N +  S  +++ ++ND+LD SK+E+GK+++     SL+   +  ++ +   A E
Sbjct: 427 -QRQHLNKVVYSSQILMSLINDILDFSKVEAGKLDIEQVEFSLNSVFANLLTNISARAQE 485

Query: 682 KRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT---SNEEV 737
           K + +R     NIP  ++ D   + Q+ LN+ SNA+ FT +G  I IS TH    ++++V
Sbjct: 486 KNLNVRFICDPNIPPTLIGDPLRISQVLLNLTSNAVKFTRNGS-ITISITHDVIPNSDKV 544

Query: 738 IL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
           +L  RV+DTG+GM+  +L K  + F Q   +      GTGLGL + K +V    G     
Sbjct: 545 LLKARVKDTGIGMSKEQLGKVFESFTQADGTTSRDFGGTGLGLTIVKQLVHLMGGNVTAQ 604

Query: 796 STPAKGTLIEIIF 808
           S    G+  E+ F
Sbjct: 605 SELNVGSTFEVTF 617


>gi|228990217|ref|ZP_04150186.1| hypothetical protein bpmyx0001_9820 [Bacillus pseudomycoides DSM
           12442]
 gi|228769500|gb|EEM18094.1| hypothetical protein bpmyx0001_9820 [Bacillus pseudomycoides DSM
           12442]
          Length = 542

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 93/500 (18%), Positives = 189/500 (37%), Gaps = 33/500 (6%)

Query: 316 DEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
              EN     +   PI    +   G++   N    L+T Y + + I     +  L     
Sbjct: 70  QHDENHLYSILQNMPIMINALDEKGSIIMWNRECELVTGYSADEIINNPTAIELLHPDKA 129

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
             D      +     +         ++    N E    M     +       N+   GI 
Sbjct: 130 YRDQLCNDLL----KNGNDFR-DWEVNITCKNGEIKTIMWSNILQSIPILGWNIGAIGI- 183

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
            +  + +  +  ++    +L  I +A  D   + + +G I          F   +E+ + 
Sbjct: 184 -DITNRKRMEENLKQTSAELELIFKAIPDLYFLSDLDGTIRKCKTNSISKFYVQIEEFIG 242

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554
           K     L  +        + +I    +   ++        ++++      +  L      
Sbjct: 243 KKIQEVLPVSITKQFEKAINQIQISAVPVLIDYPLQL---DDEIYYFEARLLPLFKDK-I 298

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
            + + DI+E K+    L  +  +            A ++HE+R PLT I GF ++++ + 
Sbjct: 299 MIIVRDITERKKTTELLKKSDTL-----KAVGQLAAGIAHEVRNPLTVIKGFMQLLQQEV 353

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     EY   I      +  I+ + L I+K       + FEP +L   +   ++L
Sbjct: 354 G------EDKEYFRLIFSEIRGIETILQEFLSIAKPN----VVVFEPKNLCTILDNVVAL 403

Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
           +   A  K I I  +       +      +KQ+  NIL N+I    +G +I I+    ++
Sbjct: 404 ISTQAIMKNIRITLNMDFENLLVECCEIQLKQVFFNILQNSIEAIQNGQEITINVKTHNS 463

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
            EV++ + D GVG+    +++  +PF         + +GTG+GL ++  +++++ GK  I
Sbjct: 464 TEVMICISDKGVGIPPERIKRLGEPFY------STKEKGTGVGLMISYQVIESHGGKINI 517

Query: 795 FSTPAKGTLIEIIFPLYDTS 814
            S   KGT + +  P+Y+ +
Sbjct: 518 RSQVGKGTTVIVFLPIYNNA 537


>gi|74317211|ref|YP_314951.1| multi-sensor signal transduction histidine kinase [Thiobacillus
           denitrificans ATCC 25259]
 gi|74056706|gb|AAZ97146.1| Multi-sensor Signal Transduction Histidine Kinase [Thiobacillus
           denitrificans ATCC 25259]
          Length = 857

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 93/682 (13%), Positives = 203/682 (29%), Gaps = 61/682 (8%)

Query: 165 ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDI 224
           A P+Y R     G     + ++  +  D     +  D++   +  +     ++  ++   
Sbjct: 193 ATPVYDRQGNRRGI--IVLDYLVELFLDRLRNIRESDRQPRSIRLLSADGYTLPDQEKPD 250

Query: 225 FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY--------------PLLTSEESSLP 270
                P      ++++         +      E                PL     +   
Sbjct: 251 GP--DPMGQRETESRLGERDPQAWQRIGSGAAEGQFVTGQGLYTYAWIDPLSPPGAAPAD 308

Query: 271 EQEDFHTINL--NQYTKKQYFGTLQNNSKESFEYLSHR-------------NHPSLSAYF 315
                  +             GTL+      F  L+                        
Sbjct: 309 ADTRRALLLAYKPAAAVDAIGGTLKQRLWLVFGVLALLFTFAAWAITFYSMRRRMAEENV 368

Query: 316 DEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
              E      ++  P    +    G +  AN        Y   + +     +  L+    
Sbjct: 369 RASEARFRALLESAPDAIVIADPKGRIELANAQAEKYFGYTRDELLHQ--SIEILVPESL 426

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
              + + +           + A   L   + +                Q P+ M    I 
Sbjct: 427 RDRHVSHRANYAADPYPRPMGAGLELFGRRKDGSEF---PIEISLSPLQTPQGMVVTAII 483

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIA--IINREGIILSTNRAVSKLFGY-PVED 491
            +    +  +R+ +    +   +++    G+       +G  L  N A+  +        
Sbjct: 484 RDISARKQIERQRKDAQTRYRELMDNLPVGVYRKTAGADGRFLEVNPALVSMLEADSAAA 543

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
           +L +P   F       +      ++ +      +       T + +     I  +    +
Sbjct: 544 LLERPLATFRTAEGRPLFGGDERQLDA-----VVNAEIELLTLKGRPFHGAISARLRREA 598

Query: 552 SC---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                Y   + D++  K+ + +L       E  +     F   VSH++R PL AI GFS 
Sbjct: 599 DGRTYYDGIIEDVTARKEIERQLESRTAELEAINRELEAFSYSVSHDLRAPLRAIDGFSR 658

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
           ++       L +    +    I R+   +  +++DLL +S++   +  L  E V +    
Sbjct: 659 ILLTDYTERL-DETGRDRLGRIRRAAQHMGTLIDDLLKLSRV--TRTELKPEDVDMSALA 715

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT--PSGGQII 726
            +  + ++    E  +    S A  +     D   ++ +  N+L NA  FT      ++ 
Sbjct: 716 EDVANDLRRQTPEHEVAF--SIAPAL-HANGDRGLLRIVLDNLLGNAWKFTGGRPDARVS 772

Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
           +       + V + V D G G      +K    F ++         GTG+GL   + +V 
Sbjct: 773 LDVDLRGGQTVYV-VSDNGAGFDMAYADKLFGVFQRLH--DVKEFPGTGIGLATVQRIVH 829

Query: 787 ANMGKFYIFSTPAKGTLIEIIF 808
            + G+ +  S   +G       
Sbjct: 830 KHGGRIWAESEVGRGARFYFTL 851



 Score =  110 bits (275), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 44/394 (11%), Positives = 99/394 (25%), Gaps = 38/394 (9%)

Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255
           LG   ++                +      S+           +    T   A      +
Sbjct: 141 LGVARERLRDASGSADFHAMLALERDEIYVSRLDLDGGQATPARPLKPTLRLATPVYDRQ 200

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN-----NSKESFEYLSHRNHPS 310
             +  ++  +       +    I  +    +       +     + ++           +
Sbjct: 201 GNRRGIIVLDYLVELFLDRLRNIRESDRQPRSIRLLSADGYTLPDQEKPDGPDPMGQRET 260

Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
            S   +                 FV   G   YA                     +  L 
Sbjct: 261 ESRLGERDPQAWQRIGSGAAEGQFVTGQGLYTYA--------------------WIDPL- 299

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
             P  +  +A     L  + +   A  A           +L                   
Sbjct: 300 SPPGAAPADADTRRALLLAYKPAAAVDAI--------GGTLKQRLWLVFGVLALLFTFAA 351

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490
             I    +  R+ +  +     +  ++LE+  D I I + +G I   N    K FGY  +
Sbjct: 352 WAITFYSMRRRMAEENVRASEARFRALLESAPDAIVIADPKGRIELANAQAEKYFGYTRD 411

Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK--ITLGSTKEEKLLSLRIIIKKL 548
           ++L +   + + ++       +     +    + +       G  K+     + I +  L
Sbjct: 412 ELLHQSIEILVPESLRDRHVSHRANYAADPYPRPMGAGLELFGRRKDGSEFPIEISLSPL 471

Query: 549 PFSSCYS--LTMHDISEWKQEKNKLSHAKKIAEK 580
                      + DIS  KQ + +   A+    +
Sbjct: 472 QTPQGMVVTAIIRDISARKQIERQRKDAQTRYRE 505



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/316 (9%), Positives = 74/316 (23%), Gaps = 28/316 (8%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG---- 145
           D  G ++  + +  K  G    +++   + ++     +   +         + +      
Sbjct: 390 DPKGRIELANAQAEKYFGYTRDELLHQSI-EILVPESLRDRHVSHRANYAADPYPRPMGA 448

Query: 146 --KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +      +G+    PI+++  P+ +            I+             K    +
Sbjct: 449 GLELFGRRKDGS--EFPIEISLSPLQTPQGMVVTA----IIRDISARKQIERQRKDAQTR 502

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
           +  L +        +    D    +  P  + M    S+              E  PL  
Sbjct: 503 YRELMDNLPVGVYRKTAGADGRFLEVNPALVSMLEADSAAALLERPLATFRTAEGRPLFG 562

Query: 264 SEESSLPEQEDFHTINLNQYTKK---QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
            +E  L    +     L    +         L+  +     Y       +     +    
Sbjct: 563 GDERQLDAVVNAEIELLTLKGRPFHGAISARLRREADGRTYYDGIIEDVTARKEIERQLE 622

Query: 321 LTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
                ++                   +F     +     +    G S +L        + 
Sbjct: 623 SRTAELEAINREL------------EAFSYSVSHDLRAPLRAIDGFSRILLTDYTERLDE 670

Query: 381 IKPVMLYRSDRTCIAA 396
                L R  R     
Sbjct: 671 TGRDRLGRIRRAAQHM 686


>gi|265997787|ref|ZP_06110344.1| multi-sensor signal transduction histidine kinase [Brucella ceti
           M490/95/1]
 gi|262552255|gb|EEZ08245.1| multi-sensor signal transduction histidine kinase [Brucella ceti
           M490/95/1]
          Length = 367

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 109/347 (31%), Positives = 177/347 (51%), Gaps = 28/347 (8%)

Query: 486 GYPVEDILRKP----FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
           G P  ++        F   +               LS      + +     T++  ++S+
Sbjct: 9   GVPRNEVDAHTRPFTFERRMANEHNRAGGQTFERQLSDGRWLQVNER---RTQDGGMVSI 65

Query: 542 RIIIKKL--------PFSSCYSLTMHDISEWKQEKNKLSHA-----------KKIAEKES 582
              I +L                T+HD+S  ++ +                 K+ AE  +
Sbjct: 66  GTDITQLKLHQERLVDSERRLMATVHDLSIARKGERDRVRELSELARKYSLEKERAEAAN 125

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
             KS+FLA +SHE+RTPL AIIGFSE+I+   FGPLG+ RY EY N I  SGN +L+++N
Sbjct: 126 RAKSEFLANMSHELRTPLNAIIGFSEMIQAGTFGPLGSDRYEEYINDIHTSGNFLLNVIN 185

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702
           D+LD+SKIE+G  +L  E + L   ++E + ++ L A EK I + T   + +  + AD R
Sbjct: 186 DILDMSKIEAGHFSLDREEIDLCPLINETVRIISLQAEEKNIAVETRIEDAM-ELYADRR 244

Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
           ++KQ+ +N+LSNA+ FT  GG+I +    T    + + ++DTGVG+    L K  +PF Q
Sbjct: 245 AIKQVLINLLSNAVKFTSYGGRITVRARKT-GAALFMTIQDTGVGIPKSALRKIGQPFEQ 303

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           + N       G+GLGL +++++ + + G   I ST   GT++ +  P
Sbjct: 304 VENQFTKTHTGSGLGLAISRSLAELHGGWLRIRSTERVGTVVSVCIP 350


>gi|254410625|ref|ZP_05024404.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196182831|gb|EDX77816.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 460

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 76/373 (20%), Positives = 161/373 (43%), Gaps = 10/373 (2%)

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
               + +++ E   L  IL+  +  I +++++G I+  N    +L GY  +++  K    
Sbjct: 88  RDRQQAELQ-EQNFLSVILDTANALITVLDKQGRIIRFNHTCERLTGYSFDEVKGKYIWD 146

Query: 500 FL-EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSL 556
                     +   + E+ +       +   +      +L+S    +      S   +  
Sbjct: 147 LFLIPEDIESVKTIIKELQAYHFPNEHKNYWITRDGTRRLISWYSTVLLDDNHSVKYFIG 206

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
              DI+E +Q +      ++  ++ S  +  F + VSHE RTPL+ I+   + +      
Sbjct: 207 IGIDITERQQAEQMRRQLERQ-QELSQLQLRFFSLVSHEFRTPLSTILASVQ-LLQLCSD 264

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
                + I     I+ +   +  +++++L I++ E+G++      V+L++     ++ + 
Sbjct: 265 QFSPDKKIRNLQRIEAATQRLRQMLDNILIINRAETGQLEFQPRRVNLEQFCQGILAEI- 323

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
           L   +    ++     +  R   D + ++ I +N+L+N+I ++P G  II+  T T   E
Sbjct: 324 LRNPDNPYDLKLVRQADCSRACLDEQLLRSILINLLTNSIKYSPPGSTIILRQTCTI-AE 382

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           VI +V D G+G+ + ++    + F +  N       G+GLGL +AK  V    G   + S
Sbjct: 383 VIFQVCDQGIGILDDDIIHIFESFYRGKNIDS--IPGSGLGLTVAKTCVIVQGGNISVTS 440

Query: 797 TPAKGTLIEIIFP 809
            P  GT   +  P
Sbjct: 441 EPGVGTTFTVTIP 453



 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/195 (10%), Positives = 56/195 (28%), Gaps = 11/195 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKRQNTWYGKT 147
           +D  G +   +    +  G    ++ G  + D+      I+    I   L+  +      
Sbjct: 115 LDKQGRIIRFNHTCERLTGYSFDEVKGKYIWDLFLIPEDIESVKTIIKELQAYHFPNEHK 174

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
             W        +    + + +   N     F G GI            + ++L+++   L
Sbjct: 175 NYWITRDGTRRLISWYSTV-LLDDNHSVKYFIGIGI--DITERQQAEQMRRQLERQ-QEL 230

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
            +++    S+   ++        P    + +             D        +  + + 
Sbjct: 231 SQLQLRFFSLVSHEFRT------PLSTILASVQLLQLCSDQFSPDKKIRNLQRIEAATQR 284

Query: 268 SLPEQEDFHTINLNQ 282
                ++   IN  +
Sbjct: 285 LRQMLDNILIINRAE 299


>gi|315645081|ref|ZP_07898207.1| Signal transduction histidine kinase [Paenibacillus vortex V453]
 gi|315279502|gb|EFU42807.1| Signal transduction histidine kinase [Paenibacillus vortex V453]
          Length = 409

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 69/258 (26%), Positives = 126/258 (48%), Gaps = 8/258 (3%)

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
               D+ E +   ++L   +   ++    KS+ LA +SHEIRTP+  I+G S +++    
Sbjct: 148 AFFGDMLELESTIDELKQMEDENDRILQEKSELLAVMSHEIRTPMNGIMGMSALLQLTSL 207

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
               +    EY   I++S   +L ++  +L+ SK+E+ KM L  EP  L   + +  SL 
Sbjct: 208 ----DEEQREYVELIEQSSESLLSMIEHILEYSKVENTKMELVMEPFYLRPLMKQVTSLF 263

Query: 676 QLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
                 K I +     + +P  + AD   ++Q+ +N++SNAI FT  G ++ ++   +  
Sbjct: 264 MNDVQRKGIRLHVVIGDEVPEKVTADANKIRQVLINLISNAIKFTSEG-EVSVAVGISPE 322

Query: 735 EE-VILRVRDTGVGMTNYELEKAMKPFGQIPNSQ-QIRGEGTGLGLPLAKAMVDANMGKF 792
            + + + VRDTG+G+      +  K F Q  +++      GTGLGL + K + +   G+ 
Sbjct: 323 TQAIKISVRDTGIGIPVDRRHRLFKSFSQAHHAEVTREYTGTGLGLSICKQLTELMNGRI 382

Query: 793 YIFSTPAKGTLIEIIFPL 810
           ++  T  +G       PL
Sbjct: 383 WLEETSGEGACFTFTIPL 400


>gi|284052123|ref|ZP_06382333.1| GAF sensor hybrid histidine kinase [Arthrospira platensis str.
           Paraca]
          Length = 928

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 79/243 (32%), Positives = 134/243 (55%), Gaps = 7/243 (2%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  AK+ A+  +  KS+FLA +SHE+RTPL AI+GF++ +  Q +G     +  EY   
Sbjct: 447 QLQQAKEAADTANRAKSEFLANMSHELRTPLNAILGFTQ-LLGQNYG--LTSQQQEYLQI 503

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I +SG  +L ++N++LD+SKIE+G + L+    +L   +    +++Q+ A+ K +++   
Sbjct: 504 IQQSGKYLLSLINEVLDLSKIEAGAVTLNPTNFNLITLLKRINTMLQIKASSKNLVMNIQ 563

Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN-EEVILRVRDTGVG 747
              +IP  +  D   ++Q+ +N+L NAI FT +G  + +  +  S+  ++   V DTG G
Sbjct: 564 LQQDIPDYVQTDESKLRQVLVNLLDNAIKFTDAGS-VTLRVSFVSSVSQLYFEVEDTGPG 622

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           +T  E E+  KPF Q    +    +GTGLGL +++  V    GK  I S    G      
Sbjct: 623 ITPDEQERLFKPFVQTDVGR-RHQQGTGLGLAISQQYVSLMGGKITIVSVVDGGAKFMFN 681

Query: 808 FPL 810
            P+
Sbjct: 682 IPV 684



 Score = 43.1 bits (100), Expect = 0.21,   Method: Composition-based stats.
 Identities = 17/134 (12%), Positives = 37/134 (27%), Gaps = 14/134 (10%)

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
           A  K++G   + +   P +   E   P  +   +      +  Q+          +  +L
Sbjct: 1   AYEKIWGRSCQAVYDDPGSWL-EAVHPDDLQSVIVNFSYQEYAQSRFIEYRIFKPDGDML 59

Query: 540 SLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSH---------KS 586
            +      +       +       DI+  K+ +  L    +                   
Sbjct: 60  WICDRAFPIKNERGDVVRVARIAEDITNRKKTEEHLRQQAEREHLLYQLTLHISQSLNLD 119

Query: 587 DFLARVSHEIRTPL 600
           D L    +E+R  L
Sbjct: 120 DILQNTVNELRHLL 133


>gi|223940253|ref|ZP_03632112.1| PAS/PAC sensor signal transduction histidine kinase [bacterium
           Ellin514]
 gi|223891080|gb|EEF57582.1| PAS/PAC sensor signal transduction histidine kinase [bacterium
           Ellin514]
          Length = 552

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 83/551 (15%), Positives = 181/551 (32%), Gaps = 48/551 (8%)

Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP----FFVYSHGNLFY--A 344
             +       +++             E    + E      +      + +         A
Sbjct: 14  PARGADGTIEDWIGTATDIHDFKVAQEQLRRSEERFRMLVVASSHCVWRHCLDQTKQSEA 73

Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
            P         +  + E + G   L            K       +        R+    
Sbjct: 74  QPEADRWWNELTGQEPEQSRGWGWLEAVHPEDKERVRKDFERALQEGRDYIIDYRVCR-- 131

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
                   ++       ++        G   +  + R+ +  +     +  +ILE    G
Sbjct: 132 -KDGQWRWLSVRGIPFRDESGVLQEWAGTISDITEQRLVENALREAEARQRAILEHLPVG 190

Query: 465 IAIINREGIILSTNRAVSKLF---GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
           +  IN+EG I+  N A   ++    Y   D   + +  +       +         S   
Sbjct: 191 VWFINQEGKIIYGNPAAKNIWSDVRYVGVDQFGE-YKAWRHGTDQRITGEEWGGARSFRT 249

Query: 522 RQTLEKITLGSTKEEKLLSL----RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI 577
            + +    +     + L  +     + + +        +  HDI+E  +    L   +++
Sbjct: 250 GKVILDEVVDIESFDGLRKVLANATVPVVEGGKVMGVVVLNHDITERVRTTEALREIQEL 309

Query: 578 AEKESSHKSD------------------FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
            +  + H                     F   +SH++R PL ++ GF++ ++      +G
Sbjct: 310 LQSRAKHLEKLVQERTVKLQETIGDLEAFSYSISHDLRAPLRSMQGFAQALQEDCGNKVG 369

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV-QLY 678
            P   +Y   I  S + +  ++ D+L  S+  + ++ L  E V L++ +   +     L 
Sbjct: 370 -PEGSDYLRRITTSASRMDRLIQDVLIFSR--ASQVELKMETVDLEKLIRGIVESYPNLQ 426

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG-GQIIISTTHTSNEEV 737
            ++  I+I       IP + A+  ++ Q   N+L NA+ F   G G  +       ++ V
Sbjct: 427 LSQAEIVI----DGPIPMVSANEAALTQCISNLLGNAVKFVSPGMGPKVCIWAEERSDRV 482

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
            L   D G+G+     EK    F ++        EGTG+GL + +   +   G+  + S 
Sbjct: 483 RLWFEDNGIGIPKNAQEKIFGIFQKLNKD----HEGTGIGLAIVRKAAERMNGRVGVESE 538

Query: 798 PAKGTLIEIIF 808
             +G+   +  
Sbjct: 539 AGQGSRFWLEL 549



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/239 (6%), Positives = 49/239 (20%), Gaps = 13/239 (5%)

Query: 97  EISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTWYGKTTLWPIEGT 155
           E      +  G    +  G    +       +         L+    +     +   +G 
Sbjct: 76  EADRWWNELTGQEPEQSRGWGWLEAVHPEDKERVRKDFERALQEGRDYIIDYRVCRKDG- 134

Query: 156 NLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHS 215
             +  + +  +P    +         G +             +  + +   + E      
Sbjct: 135 -QWRWLSVRGIPFRDESGVLQ--EWAGTISDITEQRLVENALREAEARQRAILEHLPVGV 191

Query: 216 SVEKEKYDIFSQQSPP------PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
               ++  I                   ++      +    D  +  E++    S  +  
Sbjct: 192 WFINQEGKIIYGNPAAKNIWSDVRYVGVDQFGEYKAWRHGTDQRITGEEWGGARSFRTGK 251

Query: 270 PEQEDFHTIN--LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
              ++   I                     +    +   +  +      E      E +
Sbjct: 252 VILDEVVDIESFDGLRKVLANATVPVVEGGKVMGVVVLNHDITERVRTTEALREIQELL 310


>gi|159124482|gb|EDP49600.1| sensor histidine kinase/response regulator Fos-1 [Aspergillus
           fumigatus A1163]
          Length = 708

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 93/529 (17%), Positives = 194/529 (36%), Gaps = 36/529 (6%)

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLT 352
           + ++ S          + +       +         P+P  +      +   + S L   
Sbjct: 42  DTAEPSQTPRCDTPREAHTEIVQNDTSSLNRIFRFTPVPTLILDSSLRVIEVSESHLAFC 101

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS-ARLHTIQWNRENSL 411
                  +  +     L   P          + +  + R         L  I     +  
Sbjct: 102 GKSRDFVLGASIYELPLATIPAPDIATLNGALHVAITTRAVQVVETIHLPRIS----SYF 157

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINR 470
           ++   P  + +     + +           ++   +         +++   D  I +++ 
Sbjct: 158 SLKITPIFQGSTLLNLVLEAHNVTRTHTESLHNAYI---NETYKILVDTIRDYAIFMLDA 214

Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH--YLTEILSLDLRQTLEKI 528
            G I++ N   + + GY  ++I+ + F+VF              L   L       +E  
Sbjct: 215 RGNIVTWNSGAAIIKGYKADEIIGRHFSVFYGPEDRLADKPGKELELCLRDGK---VEDE 271

Query: 529 TLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
                ++       ++I  +        +     D++E K  + ++       E+ S  K
Sbjct: 272 GWRYRQDGLRFWANVMITPIFSFGRHVGFVKITRDLTERKAAEARMV---AAFEESSKMK 328

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
           SDFLA +SHEIRTP+  +     ++ +         +  EY + I+ S +++L ++ND+L
Sbjct: 329 SDFLANMSHEIRTPMNGMHLALTMLGSTELDT----QQREYTSIIEDSMSILLQVINDVL 384

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSV 704
           D SK+ SG  +L+ + +S++  V   +   +  A    + I  S     P++   D    
Sbjct: 385 DYSKLSSGTFSLNTDVLSVENIVGAVVRNCK--ALNPAVEISCSMPPGFPKLLRGDPLRY 442

Query: 705 KQIALNILSNAIHFTPSGGQIIIS----TTHTSNEEVIL--RVRDTGVGMTNYELEKAMK 758
           +Q+  N++ NA+ FT  G  + ++             I+   V DTG+G+    +     
Sbjct: 443 RQVIQNLVGNAMKFTEKG-HVKVTHRFAVEEHDANRYIITTEVTDTGIGVPEDAINTLFT 501

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP-AKGTLIEI 806
           PF +  +S   R +GTGLGL + K++ +   G       P  KG+   +
Sbjct: 502 PFTRFADSATKRYQGTGLGLSICKSLAELMAGSVGYKPNPEGKGSCFWL 550



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 44/142 (30%), Gaps = 10/142 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH--IDPNNHIGDLLKRQNTW 143
            + +DA G +   +       G  A ++IG              D      +L  R    
Sbjct: 209 IFMLDARGNIVTWNSGAAIIKGYKADEIIGRHFSVFYGPEDRLADKPGKELELCLRDGKV 268

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +   +  +G  L    ++   PI+S  R        G V + R   + +A   R+   
Sbjct: 269 EDEGWRYRQDG--LRFWANVMITPIFSFGRHV------GFVKITRDLTERKAAEARMVAA 320

Query: 204 FSHLHEIKKGHSSVEKEKYDIF 225
           F    ++K    +    +    
Sbjct: 321 FEESSKMKSDFLANMSHEIRTP 342


>gi|152995279|ref|YP_001340114.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1]
 gi|150836203|gb|ABR70179.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1]
          Length = 936

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 76/246 (30%), Positives = 134/246 (54%), Gaps = 10/246 (4%)

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
            +L  A + A + +  KS FLA +SHE+RTPL AI+G+++ ++      + + +   Y +
Sbjct: 282 AQLHIANREAMESNRLKSQFLANISHEVRTPLNAILGYTKTLQKD----ITDTQQRLYVD 337

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ--LYANEKRILI 686
            I++S N +L I+ D+LD SKIE+GK+NL     +L   + +   ++   L   EK+I +
Sbjct: 338 TIEQSTNSLLTIIGDILDFSKIEAGKLNLESNHFNLKTLLDDVYQILSINLLTKEKQIDL 397

Query: 687 RTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVR 742
              F+ ++P   + D   V+QI  N++ NAI FT  G    ++ I++       +  ++ 
Sbjct: 398 VPEFSQDVPEWFVGDSTRVRQILTNLIGNAIKFTHQGSVRTKVSIASQTPQEITLSFQII 457

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG+G+  +++ +  KPF Q+  S   +  GTGLGL + K +V+   GK  + S P+ G+
Sbjct: 458 DTGIGIAEHKINRLFKPFSQVDTSTTRQFGGTGLGLVITKKLVEQMNGKIEVSSDPSIGS 517

Query: 803 LIEIIF 808
                 
Sbjct: 518 TFRFTI 523


>gi|116750316|ref|YP_847003.1| multi-sensor signal transduction histidine kinase [Syntrophobacter
           fumaroxidans MPOB]
 gi|116699380|gb|ABK18568.1| multi-sensor signal transduction histidine kinase [Syntrophobacter
           fumaroxidans MPOB]
          Length = 615

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 87/369 (23%), Positives = 162/369 (43%), Gaps = 24/369 (6%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           R +  +  QL ++ +A  +G+ +++  G I +TNR+ S L         R+P  V +   
Sbjct: 248 RTITEQKQQLEAVFDAMQEGVMVLDTRGRIRTTNRSFSGLVPGDSAVAGRRPLEVIVNVE 307

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII-IKKLPFSSCYSLTMHDISE 563
                +  +      +      +ITLG     +   + I+ I      +   +  HDISE
Sbjct: 308 LQESCDRIMASTSDSEGAPFSLQITLGQE---RTYDVNIVGIADSQTGAGAVVVFHDISE 364

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            K+ +                + DF+A VSHE+RTPLT+I G++E +  +    +     
Sbjct: 365 LKRLE--------------KVRQDFVANVSHELRTPLTSIKGYTETLLAE--DRVDPHML 408

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
             +   + ++ N V+ IV DLL ++++E+ +   +  PV+   A++ A       A  KR
Sbjct: 409 SSFLQIVLKNTNHVVKIVEDLLQLARLEAQQKPPNAVPVNAANALTAAWKACAHQAESKR 468

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
           + + ++       + AD   + Q+  N+L NAI ++P G  + +S      E+V L VRD
Sbjct: 469 VRLESTLPEGGVWVCADFDQLVQVFRNLLENAIRYSPEGEAVTVSHEAR-REKVTLMVRD 527

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
            G G+     ++  + F ++   +      TGLGL + + ++    G+  + S    GT 
Sbjct: 528 EGPGIPGAHQQRIFERFYRVEKHRSDNWGSTGLGLAICRHILRNLGGRIRVQSPNTGGTT 587

Query: 804 ---IEIIFP 809
                   P
Sbjct: 588 GTAFLFTLP 596


>gi|225017661|ref|ZP_03706853.1| hypothetical protein CLOSTMETH_01590 [Clostridium methylpentosum
           DSM 5476]
 gi|224949626|gb|EEG30835.1| hypothetical protein CLOSTMETH_01590 [Clostridium methylpentosum
           DSM 5476]
          Length = 1068

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 76/261 (29%), Positives = 119/261 (45%), Gaps = 8/261 (3%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
             + +   +    + AE  S  K +FL+R+SHEIRTPL AI+G   +            +
Sbjct: 537 RARMKAAVIQGNLEKAEAASRAKGEFLSRMSHEIRTPLNAILGMGAIAMQHLD---DTKK 593

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                  +  S N +L ++ND+LD+SKIESGK+ L  EP      +    +L    A EK
Sbjct: 594 VENCLKKLTLSSNHLLALINDVLDMSKIESGKVELRSEPFDFRAYLESLSNLYYGQAKEK 653

Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EV 737
            +  +T     +   ++ D   + QI  N+LSNA+ FTP+GG I +  +          +
Sbjct: 654 GLEYKTVLTGEVDETLVGDSLRLNQILTNLLSNALKFTPAGGSIQLRVSQKVQGSNTVRL 713

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
              V DTG G+     +K  + F Q  +S   +  GTGLGL + K   +   G   + S 
Sbjct: 714 HFEVTDTGCGIDEQNYQKIFESFEQEDSSVTNKYGGTGLGLSIVKRFSELMGGSVSVSSR 773

Query: 798 PAKGTLIEIIFPLYDTSHPHD 818
             +G+   +  P   T  P +
Sbjct: 774 LGEGSTFAVELPFQKTVQPEN 794


>gi|218887339|ref|YP_002436660.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218758293|gb|ACL09192.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 771

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 98/652 (15%), Positives = 204/652 (31%), Gaps = 67/652 (10%)

Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253
           +   + L++       I      V      +          R    + S  +  A  D  
Sbjct: 145 QEYRRSLERLLKASALIMGSVLVVLLASTGVL---LRVFLRRPLEALRSGMDQIARGDFA 201

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
                       + +         +   +         LQ+           ++      
Sbjct: 202 YDMGSIAHAELAQIAENFSRMCSQVEQRENELHAINTKLQDE---------IQSRRQTEL 252

Query: 314 YFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                E      V       + +    N  Y +P +  +  Y+  + I            
Sbjct: 253 ALRASEERYALVVGGTSDGIWDWDLTTNTVYFSPRWKSIIGYEDHE-IPNRPDEWKGRVH 311

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
           P   D                     R+   +   ++   +        +     +   G
Sbjct: 312 PDDLDAVLHAHDDYLARRVPEFQVEYRM---RHKDDSYRWILGRGAALWDVNGVPVRMAG 368

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
              +    +  ++++      L +IL A    I  +++ G I   NR   ++     + +
Sbjct: 369 AHTDITTRKEVEQELREAKNNLDNILNAMPSIIVGVDQAGSITLWNRTAERVTSLSRDAV 428

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
           L +P    L       +   +   ++      L+K  +      +   + I       S 
Sbjct: 429 LGRPVGEALP--DFGFLLDEIRRSIAEGGTIALDKTPVPGPGVTRYFDIVIYPVVSRGSF 486

Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
              + + DI+   + +  +   +K+            A ++HEI  PL  I+  ++ I+ 
Sbjct: 487 GAVVRLDDITGRIRIEEMMVQTEKML-----SVGGLAAGMAHEINNPLGGILQGAQNIQR 541

Query: 613 QRF---------------------GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           +                       G L     + +   I  SGN   +IV+++L+ S+  
Sbjct: 542 RLDPDFAPNVVAAEESGCSMDSIRGYLDRRGILRFLEGIRESGNRAANIVSNMLEFSR-- 599

Query: 652 SGKMNLHFEPVSLDEAVSEAISL------VQLYANEKRILIRTSFANNIPRILADLRSVK 705
             +    ++ VSL   V   + L      ++   + + I I   FA ++P +      ++
Sbjct: 600 --RSESRWQRVSLPYLVDRTLELAANDYDLKKKYDFRHIDIVRDFAADLPDLPCMPTEIE 657

Query: 706 QIALNILSNAIHFT------PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKP 759
           Q+ LN+  NA          P   +I +S  H     + + V D G GM      +  +P
Sbjct: 658 QVLLNLFKNAAQAMHLRGDRPDPPRISVSLRHE-GGMLRIDVADNGPGMEEDVRRRVFEP 716

Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMV-DANMGKFYIFSTPAKGTLIEIIFPL 810
           F    +     GEGTGLGL ++  ++   + G F + S P +GT+  +  P+
Sbjct: 717 FFTTKS----VGEGTGLGLSVSYFIITTNHGGTFTVESEPGRGTVFTLRLPV 764



 Score = 41.9 bits (97), Expect = 0.49,   Method: Composition-based stats.
 Identities = 24/244 (9%), Positives = 53/244 (21%), Gaps = 6/244 (2%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMR--LCDVSDILHIDPNNHI-GDLLKRQNT 142
            W+ D        S      IG    ++               +D   H   D L R+  
Sbjct: 272 IWDWDLTTNTVYFSPRWKSIIGYEDHEIPNRPDEWKGRVHPDDLDAVLHAHDDYLARRVP 331

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
            +        +  +    I      ++  N      R  G         +     +    
Sbjct: 332 EFQVEYRMRHKDDSYR-WILGRGAALWDVNG--VPVRMAGAHTDITTRKEVEQELREAKN 388

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
              ++            +   I         +   ++ + L                 + 
Sbjct: 389 NLDNILNAMPSIIVGVDQAGSITLWNRTAERVTSLSRDAVLGRPVGEALPDFGFLLDEIR 448

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
            S         D   +     T+          S+ SF  +   +  +     +E    T
Sbjct: 449 RSIAEGGTIALDKTPVPGPGVTRYFDIVIYPVVSRGSFGAVVRLDDITGRIRIEEMMVQT 508

Query: 323 PETV 326
            + +
Sbjct: 509 EKML 512


>gi|325109469|ref|YP_004270537.1| response regulator receiver sensor hybrid histidine kinase
           [Planctomyces brasiliensis DSM 5305]
 gi|324969737|gb|ADY60515.1| response regulator receiver sensor hybrid histidine kinase
           [Planctomyces brasiliensis DSM 5305]
          Length = 543

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 99/379 (26%), Positives = 171/379 (45%), Gaps = 44/379 (11%)

Query: 440 TRINKRKMEIEVMQLCSILEATS----DGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
           TR+   +  +   +   +L   S    +G+ +++    I               +  +  
Sbjct: 40  TRLADAEAILAAERFHLVLLDMSLPDGEGVLLVD---RIR--------------KRAVDT 82

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555
           P  V    N        L                    K E    +   + +        
Sbjct: 83  PIVVLTANNDEPTAIEALRRGAQD-----------YLIKGELSSEILQRVIRYSVERHAM 131

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
                  E ++   +L    + AE  +  KS+FLA VSHE+RTPLTAI+GF++++ +   
Sbjct: 132 AR-----EMERANQELQELSRQAEAANQLKSEFLANVSHELRTPLTAILGFTDLVLDHEL 186

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
            P         +  I ++G  +L I+ND+LD+SKIE+G + +     S  + + E ISL+
Sbjct: 187 EP----EVERASLTIKQNGQHLLSILNDILDLSKIEAGHLRIERSDCSPGQIIEEVISLL 242

Query: 676 QLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSG-GQIIIST-THT 732
           ++ A  K I +R     ++P RI +D   ++QI LN++ NAI FT  G  Q+ +ST    
Sbjct: 243 RVRATAKGIDLRFHSKPDVPARIQSDPLRIRQIMLNLIGNAIKFTERGFVQVNMSTVELE 302

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
              ++ + V DTG+GMT  +L++  +PF Q   S   +  GTGLGL + + +++   G  
Sbjct: 303 GKPQLRIDVSDTGIGMTPEQLDRLFQPFVQADASITRQFGGTGLGLTICRRLLELMDGHI 362

Query: 793 YIFSTPAKGTLIEIIFPLY 811
              S P  G+  +++FPL+
Sbjct: 363 SASSRPELGSTFQVVFPLH 381


>gi|218677263|ref|YP_002396082.1| putative two-component sensor [Vibrio splendidus LGP32]
 gi|218325531|emb|CAV27738.1| putative two-component sensor [Vibrio splendidus LGP32]
          Length = 808

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 74/254 (29%), Positives = 123/254 (48%), Gaps = 12/254 (4%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I   +Q+  +L  AK  AE  + +KS+FLA +SHEIRTP+  IIG S ++          
Sbjct: 219 IERIRQQYQELEKAKDTAEVANRNKSEFLANMSHEIRTPMNGIIGLSSLLSEMDM----P 274

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
               EY + ++ S   +LD++ND+LD SKIE+G++ L  EP+ +    ++  S  ++ A 
Sbjct: 275 KEQKEYVDMLNTSSLTLLDLINDILDYSKIEAGRLELQQEPMKMMGIAADVESTFRVKAE 334

Query: 681 EKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS------ 733
           +K +  + +    IP  ++ D   ++Q+  N++ NAI FT  G  +++S           
Sbjct: 335 QKGLKFQLAIDPKIPTMVIGDGTQLRQVLNNLVGNAIKFTEHG-HVMLSLRLEEVIEPEQ 393

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
              V   V D+G+G+   + +     F Q   S      GTGLGL +   +V     K  
Sbjct: 394 KLRVKFEVTDSGIGIAEDKQQSVFDKFQQADGSTTRIYGGTGLGLTICDKIVTLMGSKLE 453

Query: 794 IFSTPAKGTLIEII 807
           + S   KG+     
Sbjct: 454 LTSIVGKGSTFYFT 467


>gi|254446841|ref|ZP_05060316.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198256266|gb|EDY80575.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 614

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 80/254 (31%), Positives = 127/254 (50%), Gaps = 9/254 (3%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           KL  + K A   S  KS+FLA +SHE RTPL  I+G +++  ++      N +  E    
Sbjct: 227 KLRKSSKQANAASEAKSEFLANMSHEFRTPLNGIMGMTQLAISKS----SNTQQKELLEV 282

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           + +S + +L IVND+LD+SKIES ++ +  EPVSL   V       QL A +K I   T+
Sbjct: 283 VIQSADALLMIVNDILDLSKIESHRLTIESEPVSLHALVDSTTPFFQLVAKQKGIEFTTT 342

Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTT---HTSNEEVILRVRDTG 745
            +   P  I++D   ++QI  N+  NAI FT SG  + +S         + ++  + DTG
Sbjct: 343 VSPRCPELIVSDAVRLRQILFNLTGNAIKFTKSGS-VTVSIEPIQLPDGKYLLFEIADTG 401

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+ +  L    + F Q   S      GTGLGL + + +     G+ ++ S   KG++  
Sbjct: 402 IGIPDKLLNTIFEAFTQADTSSTRNFGGTGLGLTITRQLTHLLGGEVHVESVVEKGSVFS 461

Query: 806 IIFPLYDTSHPHDC 819
           +  PL       + 
Sbjct: 462 VFIPLVLPHQTPNA 475


>gi|220922972|ref|YP_002498274.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans
           ORS 2060]
 gi|219947579|gb|ACL57971.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans
           ORS 2060]
          Length = 652

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 89/514 (17%), Positives = 182/514 (35%), Gaps = 41/514 (7%)

Query: 318 GENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
              L    +D  P    +        Y N +FL     +  + +          +     
Sbjct: 19  ETALFRTIIDLSPARVVLVDTDHRYRYVNRAFLDFVGAREDEVLGRRVA-----EILGDV 73

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
              + +PV+        +     +   ++ R        +         +         +
Sbjct: 74  VYESYQPVLSRLEAEGLVWNEGWVTYPRFGRRYIQEGLVLYTS-----GDVQGILAFTRD 128

Query: 437 DVDTRINKRKMEIEVMQLCS-------ILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
             + +  + ++  ++  L +       I+ +  D + +I+ EG ++  N A    FG   
Sbjct: 129 FTELKEREEELAKQMEALRASQALNSAIVTSALDCVIVIDEEGCVVEFNPAAEATFGLAR 188

Query: 490 EDILRKPFTVFL-EQNTPSVMNHYLTEILSLDLRQTLEK--ITLGSTKEEKLLSLRIII- 545
             +L +P +  +            L   L       + +     G   +  +  + + I 
Sbjct: 189 AAVLGQPISDLIVPPYLRQRHVEGLKRYLVTGRGSVVGRRIEIEGMRSDGSIFPVELAIK 248

Query: 546 -KKLPFSSCYSLTMHDISEWKQE--KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
             +LP    ++  + D+S  KQ   + +    +    ++ S     LA V+HE+  PL A
Sbjct: 249 EVRLPERRLFTAYLRDLSAAKQAAAEIEAQRMRIHQMEKLSAMGSLLAGVAHELNNPL-A 307

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           I+     +   +   L   R  E    I  +      IV   + +++ E        EPV
Sbjct: 308 ILIAQATLLRDKAPTLDVQRRAE---RIHAAAERSGRIVKSFVAMARQE----PPRREPV 360

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH--FTP 720
            L++ V  A+ +         + +  + A  +P I  D   + Q+  N+L NA    F  
Sbjct: 361 DLNDIVQVAVEMTAYGRRSAGVTLELALAPMLPPISGDRDLLGQVVANLLINAAQVLFDH 420

Query: 721 SGGQ-IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
            G + I + T+    E V+L V D+G G+     E    P+          G GTG+GL 
Sbjct: 421 RGDRCITLRTSL-DGEAVVLEVADSGPGVPPDIREHIFDPYFTTKP----VGAGTGIGLS 475

Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
           ++  +++++ G+  +   P  G L  ++ P+ D 
Sbjct: 476 ISHRVIESHGGRISVEDRPGGGALFRVVLPVRDA 509



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/423 (10%), Positives = 108/423 (25%), Gaps = 35/423 (8%)

Query: 74  FVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI 133
           F         R    +D     + ++      +G    +++G R+ ++   +  +    +
Sbjct: 23  FRTIIDLSPARVVL-VDTDHRYRYVNRAFLDFVGAREDEVLGRRVAEILGDVVYESYQPV 81

Query: 134 GDLLKRQN-TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192
              L+ +   W      +P  G   Y+   L            +  R F  +     +  
Sbjct: 82  LSRLEAEGLVWNEGWVTYPRFGR-RYIQEGLVLYTSGDVQGILAFTRDFTELKEREEELA 140

Query: 193 PR-ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP--------------------- 230
            +    +      S +         V  E+  +                           
Sbjct: 141 KQMEALRASQALNSAIVTSALDCVIVIDEEGCVVEFNPAAEATFGLARAAVLGQPISDLI 200

Query: 231 -PPHLRMKNKVSSLTEYYAHKDDVLKTE-KYPLLTSEESSLPEQEDFHTINL-NQYTKKQ 287
            PP+LR ++           +  V+    +   + S+ S  P +     + L  +     
Sbjct: 201 VPPYLRQRHVEGLKRYLVTGRGSVVGRRIEIEGMRSDGSIFPVELAIKEVRLPERRLFTA 260

Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPS 347
           Y   L    + + E  + R             +L      +   P  +         + +
Sbjct: 261 YLRDLSAAKQAAAEIEAQRMRIHQMEKLSAMGSLLAGVAHELNNPLAILIAQATLLRDKA 320

Query: 348 ---FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
               +     +     E +G +     A    +    +PV L   D   +A     +  +
Sbjct: 321 PTLDVQRRAERIHAAAERSGRIVKSFVAMARQEPPRREPVDLN--DIVQVAVEMTAYGRR 378

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
                            +   + + Q          ++         + L + L+   + 
Sbjct: 379 SAGVTLELALAPMLPPISGDRDLLGQVVANLLINAAQVLFDHRGDRCITLRTSLD--GEA 436

Query: 465 IAI 467
           + +
Sbjct: 437 VVL 439


>gi|70992129|ref|XP_750913.1| sensor histidine kinase/response regulator Fos-1/TcsA [Aspergillus
           fumigatus Af293]
 gi|66848546|gb|EAL88875.1| sensor histidine kinase/response regulator Fos-1/TcsA [Aspergillus
           fumigatus Af293]
          Length = 708

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 93/529 (17%), Positives = 194/529 (36%), Gaps = 36/529 (6%)

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLT 352
           + ++ S          + +       +         P+P  +      +   + S L   
Sbjct: 42  DTAEPSQTPRCDTPREAHTEIVQNDTSSLNRIFRFTPVPTLILDSSLRVIEVSESHLAFC 101

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS-ARLHTIQWNRENSL 411
                  +  +     L   P          + +  + R         L  I     +  
Sbjct: 102 GKSRDFVLGASIYELPLATIPAPDIATLNGALHVAITTRAVQVVETIHLPRIS----SYF 157

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINR 470
           ++   P  + +     + +           ++   +         +++   D  I +++ 
Sbjct: 158 SLKITPIFQGSTLLNLVLEAHNVTRTHTESLHNAYI---NETYKILVDTIRDYAIFMLDA 214

Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH--YLTEILSLDLRQTLEKI 528
            G I++ N   + + GY  ++I+ + F+VF              L   L       +E  
Sbjct: 215 RGNIVTWNSGAAFIKGYKADEIIGRHFSVFYGPEDRLADKPGKELELCLRDGK---VEDE 271

Query: 529 TLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
                ++       ++I  +        +     D++E K  + ++       E+ S  K
Sbjct: 272 GWRYRQDGLRFWANVMITPIFSFGRHVGFVKITRDLTERKAAEARMV---AAFEESSKMK 328

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
           SDFLA +SHEIRTP+  +     ++ +         +  EY + I+ S +++L ++ND+L
Sbjct: 329 SDFLANMSHEIRTPMNGMHLALTMLGSTELDT----QQREYTSIIEDSMSILLQVINDVL 384

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSV 704
           D SK+ SG  +L+ + +S++  V   +   +  A    + I  S     P++   D    
Sbjct: 385 DYSKLSSGTFSLNTDVLSVENIVGAVVRNCK--ALNPAVEISCSMPPGFPKLLRGDPLRY 442

Query: 705 KQIALNILSNAIHFTPSGGQIIIS----TTHTSNEEVIL--RVRDTGVGMTNYELEKAMK 758
           +Q+  N++ NA+ FT  G  + ++             I+   V DTG+G+    +     
Sbjct: 443 RQVIQNLVGNAMKFTEKG-HVKVTHRFAVEEHDANRYIITTEVTDTGIGVPEDAINTLFT 501

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP-AKGTLIEI 806
           PF +  +S   R +GTGLGL + K++ +   G       P  KG+   +
Sbjct: 502 PFTRFADSATKRYQGTGLGLSICKSLAELMAGSVGYKPNPEGKGSCFWL 550



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 44/142 (30%), Gaps = 10/142 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH--IDPNNHIGDLLKRQNTW 143
            + +DA G +   +       G  A ++IG              D      +L  R    
Sbjct: 209 IFMLDARGNIVTWNSGAAFIKGYKADEIIGRHFSVFYGPEDRLADKPGKELELCLRDGKV 268

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +   +  +G  L    ++   PI+S  R        G V + R   + +A   R+   
Sbjct: 269 EDEGWRYRQDG--LRFWANVMITPIFSFGRHV------GFVKITRDLTERKAAEARMVAA 320

Query: 204 FSHLHEIKKGHSSVEKEKYDIF 225
           F    ++K    +    +    
Sbjct: 321 FEESSKMKSDFLANMSHEIRTP 342


>gi|239905535|ref|YP_002952274.1| sensor histidine kinase [Desulfovibrio magneticus RS-1]
 gi|239795399|dbj|BAH74388.1| sensor histidine kinase [Desulfovibrio magneticus RS-1]
          Length = 985

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 87/679 (12%), Positives = 192/679 (28%), Gaps = 75/679 (11%)

Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKK----------GHSSVEKEKYDIFSQQSPPPHLR 235
                   +   +  ++K+  + +             G   V      +    SP   L 
Sbjct: 329 ELERSLTFQQALRASEEKYRAIFDHAPIGIFRCTYGDGLQEVNAALARMHGFSSPEAMLG 388

Query: 236 MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN 295
               +   +         +++                                +      
Sbjct: 389 GLEHLPLYSYLRPQGSRDIRSALAVSPQGLRLEALLGRRDGQAFPAIINASLQYDAAGEP 448

Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKY 354
           +  +                 E E      ++     ++     G L   +PS      Y
Sbjct: 449 ASINGLVEDVAERRQAEEALRESEARYRSVIENIQDMYYRTDREGRLVMLSPSTPRQLGY 508

Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
            SVD++              +  +     +     +   +     L         ++ ++
Sbjct: 509 DSVDELLGRPAADF-----WMEPDKRHALLERIAVEGRVLDYEVTLKDKS---GGAVLVS 560

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII 474
                  +     +   GI  +    +  + ++  ++    ++L+     +     +   
Sbjct: 561 TTSAYYRDGEGRVLGVEGIFRDITGRKQLEMQLADQLAFQQALLDTIPYAVFYKGTDCRF 620

Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVF--LEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
           L  N+A    FG   +D++ K       L     +        +++       E     +
Sbjct: 621 LGFNKAYEDWFGVRRQDLVGKTVLDLDYLPAEDRAAYQAEDEAVIAGAEPVHKEMSIPLA 680

Query: 533 TKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
                     +   +L           + DI+E K+ +  +   +K+            A
Sbjct: 681 DGAVHQTLYSVTGFRLSGGASGGLIGVIVDITEHKKMQELMIQTEKMM-----SVGGLAA 735

Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLG---------------------NPRYIEYANY 629
            ++HE+  PL  I+   + ++ +    L                           EY   
Sbjct: 736 GMAHELNNPLGIILQSVQNMERRLSPALPGNLEVARRLGLEMDSIAAYMRARNIDEYLRG 795

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL------VQLYANEKR 683
           I  +G+    I+  +LD S+             +++  +  A+ L      ++   + K 
Sbjct: 796 IQEAGDRAARIIRTMLDFSRSSQSL----RASCNVNALLDMAVDLAANDYDLKKRYDFKG 851

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ----IIIST-THTSNEEVI 738
           I I   +   +P +      + Q+ LNI+ NA       GQ      +   T    +   
Sbjct: 852 IRIERDYDPTLPPVECMETEIVQVLLNIIKNAAQAMADRGQRPDPPTLRLITRQDPDAAR 911

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP----LAKAMVDANMGKFYI 794
           + +RD G GM      +  +PF         +GEGTGLGL     +   +   + G+  +
Sbjct: 912 IEIRDNGPGMDEATRRRVFEPFFTTKP----QGEGTGLGLSVGFFI---IAQKHKGRISV 964

Query: 795 FSTPAKGTLIEIIFPLYDT 813
            S   +GT   +  PL D 
Sbjct: 965 ASRLGQGTAFAVEIPLGDA 983



 Score =  131 bits (330), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 47/385 (12%), Positives = 108/385 (28%), Gaps = 20/385 (5%)

Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD 252
            +   + L    +  HE     +          + Q    ++  + + + L ++   ++ 
Sbjct: 223 EQEGLRNLRVAATTEHETALSMAVRSDRPLLFSAIQKALANIPQERRRALLDKWVHPQER 282

Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
            ++T  + L  +             +       ++ +           E        +  
Sbjct: 283 QIRTLTWLLYAAIGLLSVTVALLGVLLYRSLALRRAYQNKAQELAAELE-----RSLTFQ 337

Query: 313 AYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
                 E       D  PI  F  +    L   N +   +  + S + +   GGL  L  
Sbjct: 338 QALRASEEKYRAIFDHAPIGIFRCTYGDGLQEVNAALARMHGFSSPEAM--LGGLEHLPL 395

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
              L    +             +   A L         +         + +   E    N
Sbjct: 396 YSYLRPQGSRDIRSALAVSPQGLRLEALLGR---RDGQAFPAIINASLQYDAAGEPASIN 452

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV-E 490
           G+  +  + R  +  +     +  S++E   D     +REG ++  + +  +  GY   +
Sbjct: 453 GLVEDVAERRQAEEALRESEARYRSVIENIQDMYYRTDREGRLVMLSPSTPRQLGYDSVD 512

Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
           ++L +P   F  +      +  L  I      + L+       K    + +         
Sbjct: 513 ELLGRPAADFWMEPDKR--HALLERIAVEG--RVLDYEVTLKDKSGGAVLVSTTSAYYRD 568

Query: 551 SSCYS----LTMHDISEWKQEKNKL 571
                        DI+  KQ + +L
Sbjct: 569 GEGRVLGVEGIFRDITGRKQLEMQL 593



 Score = 81.2 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 31/372 (8%), Positives = 89/372 (23%), Gaps = 21/372 (5%)

Query: 97  EISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLK-RQNTWYGKTTLWPIE 153
           E++  L +  G  + + +   L  +    ++ P     I   L         +  L   +
Sbjct: 369 EVNAALARMHGFSSPEAMLGGLEHLPLYSYLRPQGSRDIRSALAVSPQGLRLEALLGRRD 428

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
           G     P  + A   Y    E +   G  +V             +  + ++  + E  + 
Sbjct: 429 G--QAFPAIINASLQYDAAGEPASING--LVEDVAERRQAEEALRESEARYRSVIENIQD 484

Query: 214 HSSVEKEKYDIFSQQSPPP---HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270
                  +  +       P        +++          +   +      +  E   L 
Sbjct: 485 MYYRTDREGRLVMLSPSTPRQLGYDSVDELLGRPAADFWMEPDKRHALLERIAVEGRVLD 544

Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL----TPETV 326
            +      +             ++               +     +             +
Sbjct: 545 YEVTLKDKSGGAVLVSTTSAYYRDGEGRVLGVEGIFRDITGRKQLEMQLADQLAFQQALL 604

Query: 327 DKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
           D  P   F           N ++      +  D +         L A   +   A    +
Sbjct: 605 DTIPYAVFYKGTDCRFLGFNKAYEDWFGVRRQDLVGKTVLDLDYLPAEDRAAYQAEDEAV 664

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
           +  ++           +I           +           +    G+  +  + +   +
Sbjct: 665 IAGAEPVHKEM-----SIPLADGAVHQTLYSVTGFRLSGGASGGLIGVIVDITEHKKM-Q 718

Query: 446 KMEIEVMQLCSI 457
           ++ I+  ++ S+
Sbjct: 719 ELMIQTEKMMSV 730



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/253 (10%), Positives = 72/253 (28%), Gaps = 23/253 (9%)

Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
           N      T++++   + +      L  A + +  N  +       D+       ++ T+ 
Sbjct: 229 NLRVAATTEHETALSMAVRSDRPLLFSAIQKALANIPQERRRALLDKWVHPQERQIRTLT 288

Query: 405 WN-----RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN----KRKMEIEVMQLC 455
           W         S+ +  +                   E           ++ +     +  
Sbjct: 289 WLLYAAIGLLSVTVALLGVLLYRSLALRRAYQNKAQELAAELERSLTFQQALRASEEKYR 348

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVED-----ILRKPFTVFLEQNTPSVMN 510
           +I +    GI        +   N A++++ G+   +     +   P   +L       + 
Sbjct: 349 AIFDHAPIGIFRCTYGDGLQEVNAALARMHGFSSPEAMLGGLEHLPLYSYLRPQGSRDIR 408

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQ 566
             L         Q L    L   ++ +     I       ++      +  + D++E +Q
Sbjct: 409 SALAV-----SPQGLRLEALLGRRDGQAFPAIINASLQYDAAGEPASINGLVEDVAERRQ 463

Query: 567 EKNKLSHAKKIAE 579
            +  L  ++    
Sbjct: 464 AEEALRESEARYR 476



 Score = 65.0 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/330 (9%), Positives = 77/330 (23%), Gaps = 39/330 (11%)

Query: 87  WNIDAHGYLKEISEELPKTIGN-YAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
           +  D  G L  +S   P+ +G     +++G    D                L  +    G
Sbjct: 487 YRTDREGRLVMLSPSTPRQLGYDSVDELLGRPAADFWMEPD------KRHALLERIAVEG 540

Query: 146 KTTLWPI---EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
           +   + +   + +   V +   +           G  G  I                   
Sbjct: 541 RVLDYEVTLKDKSGGAVLVSTTSAYYRDGEGRVLGVEG--IFRDITGRKQLEMQLADQLA 598

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSP---PPHLRMKNKVSS---LTEYYAHKDDVLKT 256
               L +        +                  +R ++ V       +Y   +D     
Sbjct: 599 FQQALLDTIPYAVFYKGTDCRFLGFNKAYEDWFGVRRQDLVGKTVLDLDYLPAEDRAAYQ 658

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
            +   + +    + ++      +   +         + +   S   +      +      
Sbjct: 659 AEDEAVIAGAEPVHKEMSIPLADGAVHQTLYSVTGFRLSGGASGGLIGVIVDITEHKKMQ 718

Query: 317 EGENLTPETVD------------KCPIPFFVYSHGNLFY-------ANPSFLLLTKYK-- 355
           E    T + +               P+   + S  N+          N         +  
Sbjct: 719 ELMIQTEKMMSVGGLAAGMAHELNNPLGIILQSVQNMERRLSPALPGNLEVARRLGLEMD 778

Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
           S+     A  +   L   + + + A + + 
Sbjct: 779 SIAAYMRARNIDEYLRGIQEAGDRAARIIR 808


>gi|218438110|ref|YP_002376439.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC
           7424]
 gi|218170838|gb|ACK69571.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC
           7424]
          Length = 577

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 86/357 (24%), Positives = 147/357 (41%), Gaps = 27/357 (7%)

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS--- 532
           S N  +   F +  E   ++            +          L +     +   G    
Sbjct: 211 SCNSILESYFDWQAEPYWQQALIQPEPVIVDQLTPDEFQAKSVLVVSTFYLEERNGLICL 270

Query: 533 ---TKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
                        I + +       +   H          +L  A   AE+ S  KS+FL
Sbjct: 271 QQCQHHRSWSPAEIELVQELADQVGTAIAH-----ATLYQELEQATHAAEEASRLKSEFL 325

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
           A  +HE+RTPL  IIGF ++I +       +    E+     +S   +L+++ND+LD++K
Sbjct: 326 ASTTHELRTPLNGIIGFLKLILDGMAD--DSEEQQEFLEEAHKSALHLLNLINDILDLAK 383

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA--NNIPRILADLRSVKQI 707
           IE+GKM L  EPV L+E ++   +     A +K +  +      +    +  + + + Q+
Sbjct: 384 IEAGKMVLELEPVDLEELLTAVNNFTAPQAEQKGLTFKIKKPQTHTPITLYGNYQRLLQV 443

Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSN----------EEVILRVRDTGVGMTNYELEKAM 757
            LN++ NAI FT  GG I++S                  V + V DTG+G++  +  K  
Sbjct: 444 MLNLVGNAIKFTHEGG-IVVSAEIVKKKILCHEQEFPGIVKISVADTGIGVSLEQQAKLF 502

Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFPLYDT 813
           + F QI  S+     GTGLGL +++ +V A  G+   +S     G  +    PL + 
Sbjct: 503 EKFVQIDGSRTKAYGGTGLGLAISQKLVQAMGGQIDFYSMGEGLGATVTFTTPLQEV 559


>gi|254236017|ref|ZP_04929340.1| hypothetical protein PACG_01973 [Pseudomonas aeruginosa C3719]
 gi|126167948|gb|EAZ53459.1| hypothetical protein PACG_01973 [Pseudomonas aeruginosa C3719]
          Length = 741

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 90/379 (23%), Positives = 163/379 (43%), Gaps = 19/379 (5%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF--T 498
           +  +  +   +    ++++     ++I   +G +L+ NR   +      E         +
Sbjct: 101 QRTEADLSGRLALKQALVDGIPYPVSIRTLDGRLLACNRNYLESLRMTREQARGTLLTDS 160

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM 558
            ++E +   +M+     +         +          +LL +   +          L +
Sbjct: 161 DWVEGSKARLMHQQCLAVARGGTASFTDMAVRI---GGQLLEIHHWVTPYRDRQGRMLGL 217

Query: 559 ----HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E ++   +L  A + A++ +  KS FLA +SHEIRTP+ A+IG  E +  QR
Sbjct: 218 MNGWIDITERERLARQLREAMRQADEANRAKSVFLATMSHEIRTPMNAVIGILE-LVLQR 276

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
             P    R          +   +  ++ D+LD++KIESG + L  E V L   V     +
Sbjct: 277 LAPEQRERAS--LEVAYEAAGSLQLLIGDILDVAKIESGHLTLTPERVRLRHVVESVRRM 334

Query: 675 VQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
            +  A +K + +     +     +L D    KQ+  N++SNAI FT  G Q+ I     S
Sbjct: 335 FEGLARQKGLRLVVELDDAPGRDVLIDPLRFKQVLSNLVSNAIKFTERG-QVTIRLQERS 393

Query: 734 NEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
            +E    V + V D+G+G+   +  +  +PF Q+   +     GTGLGL + + +VD   
Sbjct: 394 LDEGRAIVRVDVEDSGIGIAPADQARLFQPFIQVAKGRT-VQGGTGLGLAICRKLVDLMG 452

Query: 790 GKFYIFSTPAKGTLIEIIF 808
           G   + S P KGT + +  
Sbjct: 453 GDVEMHSEPGKGTRVSLDL 471


>gi|161522467|ref|YP_001585396.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia multivorans
           ATCC 17616]
 gi|160346020|gb|ABX19104.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia multivorans
           ATCC 17616]
          Length = 539

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 78/376 (20%), Positives = 148/376 (39%), Gaps = 20/376 (5%)

Query: 448 EIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
                +  +++ + +D  + +++ EG +++ N    ++ GY   +I+   F+ F      
Sbjct: 37  RFAEFRFQTVVASITDYAVFMLDTEGHVVTWNAGAERIKGYRASEIVGNHFSRFYPPEAL 96

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDIS 562
           +        +         E       K+  L    + I  +   S     +     D++
Sbjct: 97  AAGRPSY-GLREAATHGRFEDEGWRVRKDGSLFWANVTITAVRDESGQLCGFIKITRDMT 155

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E ++ +          E  +   S F+A ++HE+R  L  +     V+++         +
Sbjct: 156 ERRRLEE--------LETSTHRLSVFIAMLAHELRNHLAPLRHSVGVLQSLPDPAPALAQ 207

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             +    + R    +  +V+DLLD+ +I SGK+ L   PV++ + V+  +  VQ     +
Sbjct: 208 CRDA---VHRQVAQLTRLVDDLLDVGRITSGKVELEDRPVTVRDLVARGVESVQPKLATR 264

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
              I          +  D   + Q+  N+L NA  F+P GG+I IS        V +RV 
Sbjct: 265 EQQIHVDLPPEPIVLRGDDARLVQVLHNLLDNASKFSPRGGRIDISARVE-GPVVAIRVI 323

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKG 801
           D GVG+    LE     F Q   +     +G GLGL + ++ V+ + G     S  P  G
Sbjct: 324 DRGVGIAPGALESIFDLFEQ-EGAAHRPTDGFGLGLAICRSFVELHGGMISAESDGPGHG 382

Query: 802 TLIEIIFPLYDTSHPH 817
               I  P+   +   
Sbjct: 383 ATFIIRLPVERAARAE 398



 Score = 60.0 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/304 (9%), Positives = 76/304 (25%), Gaps = 24/304 (7%)

Query: 58  NQESVSNTNYLDSENTFVFDPIPRTVR--FTWNIDAHGYLKEISEELPKTIGNYAFKMIG 115
              +    + L     F F  +  ++     + +D  G++   +    +  G  A +++G
Sbjct: 25  PSPAPDGGDLLHRFAEFRFQTVVASITDYAVFMLDTEGHVVTWNAGAERIKGYRASEIVG 84

Query: 116 MRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREF 175
                      +        L +       +   W +         ++    +   + + 
Sbjct: 85  NHFSRFYPPEALAAGRPSYGLREAATHGRFEDEGWRVRKDGSLFWANVTITAVRDESGQL 144

Query: 176 SGFRGFGIVHVNRVDNDPRALG----KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231
            GF    I            L     +         HE++   + +      + S   P 
Sbjct: 145 CGF--IKITRDMTERRRLEELETSTHRLSVFIAMLAHELRNHLAPLRHSVGVLQSLPDPA 202

Query: 232 PH------------LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTIN 279
           P              ++   V  L +        ++ E  P+   +  +   +     + 
Sbjct: 203 PALAQCRDAVHRQVAQLTRLVDDLLDVGRITSGKVELEDRPVTVRDLVARGVESVQPKLA 262

Query: 280 LNQYTKKQYFGT----LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV 335
             +             L+ +     + L +    +       G       V+   +   V
Sbjct: 263 TREQQIHVDLPPEPIVLRGDDARLVQVLHNLLDNASKFSPRGGRIDISARVEGPVVAIRV 322

Query: 336 YSHG 339
              G
Sbjct: 323 IDRG 326


>gi|51892178|ref|YP_074869.1| two-component sensor histidine kinase [Symbiobacterium thermophilum
           IAM 14863]
 gi|51855867|dbj|BAD40025.1| two-component sensor histidine kinase [Symbiobacterium thermophilum
           IAM 14863]
          Length = 521

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 87/251 (34%), Positives = 140/251 (55%), Gaps = 8/251 (3%)

Query: 563 EWKQEKN--KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           E K  +   +L  A +  E+ S +KS+FL  +SHE+RTPLT+II F+E++ N    P   
Sbjct: 275 EQKVAERTRELEEANRELERASRYKSEFLTMISHELRTPLTSIIAFTELLLND---PRLA 331

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
           P   E  + +  S   +L ++ +LLD S++E+GK+ L  E + L + + + +  +Q  A 
Sbjct: 332 PEQRESLSEVLESSQKLLGMITNLLDYSRLEAGKVKLFREVLDLRDLIRDGVRTIQPLAA 391

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
           +KRI++    A  +P + AD   + Q+ LN+LSNA+ FTP GG++ +        EV + 
Sbjct: 392 KKRIMLSMDCAPEVPLVHADPLRISQVLLNLLSNAVKFTPEGGRVAVECR-ADQREVRVT 450

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           VRDTG G+   E E   +PF Q     + R EG GLGL L+ ++V A+ G+ ++ S P  
Sbjct: 451 VRDTGPGVPEEEQELIFQPFRQGRE--KGRPEGWGLGLALSASLVRAHDGRIWVESEPGH 508

Query: 801 GTLIEIIFPLY 811
           G       P++
Sbjct: 509 GAAFTFTLPIW 519


>gi|323698578|ref|ZP_08110490.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. ND132]
 gi|323458510|gb|EGB14375.1| multi-sensor hybrid histidine kinase [Desulfovibrio desulfuricans
           ND132]
          Length = 1118

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 85/269 (31%), Positives = 138/269 (51%), Gaps = 9/269 (3%)

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                 I+  ++   +L  A++ AE+ +  KSDFLAR+SHEIRTP+ AIIG + +    +
Sbjct: 340 LTRARFIAARERNGRELETARRAAEEANRAKSDFLARMSHEIRTPMNAIIGLTHLALKTQ 399

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                  +  +Y   +  S N +L I+ND+LD SKIE+G++ +      LD+ ++  I++
Sbjct: 400 LTA----KQADYLAKVSLSANSLLGIINDILDFSKIEAGRLTVDEADFLLDDVLNNIINM 455

Query: 675 VQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
           + L A +K I       + +P R+  D   + Q+ LN+ +NAI FT  G  I+ +     
Sbjct: 456 LGLSAEQKGIEFLLLVRSTVPNRVRGDALRLGQVLLNLTNNAIKFTEKGEVILQADLLEQ 515

Query: 734 NEE---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
           +     +   VRDTG+G+    L++  +PF Q   S   +  GTGLGL ++K +V    G
Sbjct: 516 DGTTAVIRFSVRDTGIGIGPEHLDQLFQPFSQADGSITRQFGGTGLGLSISKRLVKMMGG 575

Query: 791 KFYIFSTPAKGTLIEIIFPLY-DTSHPHD 818
              + S P KG+      PL     H +D
Sbjct: 576 DMAVVSEPGKGSEFSFTLPLKLQPDHAND 604


>gi|238795238|ref|ZP_04638822.1| Phosphate regulon sensor protein phoR [Yersinia intermedia ATCC
           29909]
 gi|238725431|gb|EEQ17001.1| Phosphate regulon sensor protein phoR [Yersinia intermedia ATCC
           29909]
          Length = 438

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 65/358 (18%), Positives = 133/358 (37%), Gaps = 35/358 (9%)

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
           +  S  E+  D + I   +G I   N    +L G+   +   +     L     S     
Sbjct: 99  RFRSGAESLPDAVVITTIDGNIFWCNGLAQQLLGFRWPEDNGQHILNLLRYPEFSQYL-- 156

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572
                    +Q   +           +  R++           +   D+++ +Q +    
Sbjct: 157 --------QQQEFSRPLTLQLNNGYYVEFRVMPY---SEGQLLMVARDVTQMRQLEG--- 202

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
                       + +F A VSHE+RTPLT + G+ E++ +Q        +       +  
Sbjct: 203 -----------ARRNFFANVSHELRTPLTVLQGYLEMMHDQELAGPLRDKA---LGTMQE 248

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN-EKRILIRTSFA 691
               +  +V  LL +S+IE+       E V +   +      VQ  +N    I  R +  
Sbjct: 249 QTKRMDGLVKQLLTLSRIEAAPNVDMNERVDIPLMLKVLQHEVQALSNGRHEITFRVN-- 306

Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751
            +  ++  +   ++    N++ NA++ TP+G +I +    T+      +V D G G+   
Sbjct: 307 -DQLKVFGNEDQLRSAVSNLVYNAVNHTPAGTKIEVCWQQTAQG-AQFQVSDNGPGIGPE 364

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            + +  + F ++  ++  +  G+GLGL + K  +  +  +  + S    GT      P
Sbjct: 365 HVPRLTERFYRVDKARSRQTGGSGLGLAIVKHALSHHDARLDVMSEVGLGTRFIFTLP 422


>gi|24349687|gb|AAN56450.1|AE015782_2 sensor histidine kinase/response regulator [Shewanella oneidensis
           MR-1]
          Length = 929

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 90/245 (36%), Positives = 134/245 (54%), Gaps = 8/245 (3%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  AKK A + S  KS+FLA +SHE+RTPL  +IGF+  +         +   ++Y N 
Sbjct: 280 ELDLAKKRALEASRIKSEFLANMSHELRTPLNGVIGFARQLVKTPL----HSSQVDYINT 335

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I+RS   +L I+ND+LD SK+E+GKM L   P  L E + E I+L+   A  K + +   
Sbjct: 336 IERSATNLLAIINDILDFSKLEAGKMVLESMPFGLRETLGETITLISGSAQAKGLELVVD 395

Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVILR--VRDTG 745
            A N+P  +  D   V QI  N++ NAI FT SG   + +     ++E+V+LR  V DTG
Sbjct: 396 IAPNVPDNVNGDSMRVCQIINNLVGNAIKFTDSGSVLVKLELQAQTDEQVVLRCDVIDTG 455

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+   + +   + FGQ  +S   R  GTGLGL + K +V+   G+    S+  KG+   
Sbjct: 456 IGIDESQQDFLFQAFGQADSSISRRFGGTGLGLVITKRLVNQMGGQIGFTSSVDKGSNFW 515

Query: 806 IIFPL 810
              PL
Sbjct: 516 FTLPL 520


>gi|238752750|ref|ZP_04614219.1| Phosphate regulon sensor protein phoR [Yersinia rohdei ATCC 43380]
 gi|238709008|gb|EEQ01257.1| Phosphate regulon sensor protein phoR [Yersinia rohdei ATCC 43380]
          Length = 438

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 65/358 (18%), Positives = 131/358 (36%), Gaps = 35/358 (9%)

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
           +  S  E+  D + +   EG I   N    +L G+   +   +     L     S     
Sbjct: 99  RFRSGAESLPDAVVMTTIEGNIFWCNGLAQQLLGFRWPEDNGQHILNLLRYPEFSQYL-- 156

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572
                    +Q   +           +  R++           +   D+++ +Q +    
Sbjct: 157 --------QQQEFSRPLTLQLNNGYYVEFRVMPY---SEGQLLMVARDVTQMRQLEG--- 202

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
                       + +F A VSHE+RTPLT + G+ E++ +Q        +       +  
Sbjct: 203 -----------ARRNFFANVSHELRTPLTVLQGYLEMMHDQELAGPLREKA---LGTMQE 248

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN-EKRILIRTSFA 691
               +  +V  LL +S+IE+       E V +   +      VQ  +N    I+ R +  
Sbjct: 249 QTKRMDGLVKQLLTLSRIEAAPNVDMNEQVDIPRMLKMLQLEVQALSNGRHEIVFRVN-- 306

Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751
               ++  +   ++    N++ NA++ TP G +I +    T       +V D G G+   
Sbjct: 307 -EQLKVFGNDDQLRSAVSNLVYNAVNHTPVGTKIEVCWQQTPQG-AQFQVSDNGPGIAPE 364

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            + +  + F ++  ++  +  G+GLGL + K  +  +  +  + S    GT      P
Sbjct: 365 HVPRLTERFYRVDKARSRQTGGSGLGLAIVKHALSHHDARLDVMSEIGLGTRFIFTLP 422


>gi|330809073|ref|YP_004353535.1| histidine kinase, Classic [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327377181|gb|AEA68531.1| putative histidine kinase, Classic [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 966

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 89/421 (21%), Positives = 166/421 (39%), Gaps = 13/421 (3%)

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
                    ++     +      P +    +  +    G+  +       +   +    +
Sbjct: 410 TPVQGVSRMMREIGRGNWQPAASPSDITELWSMSDQALGMGRQLAQAEFIRSSTQ---QR 466

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
           L  ++E+ ++G+     +        A+S+ FG+ V ++        +          +L
Sbjct: 467 LELVMESFAEGLWEYYPKRQRFILKGALSQRFGFAVNEVPMARLLENIPVEDRQTFTQFL 526

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRII-----IKKLPFSSCYSLTMHDISEWKQEK 568
            E          E          KL+ +          +L  SS   +   DI+  KQ +
Sbjct: 527 EEARGSASVAP-EVEFRIRDVHGKLIWILCRGRTLEPSRLDDSSVVVVACVDITTLKQTQ 585

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
             L      AE  S+ KS F++ +SHE+RTPL AI GF+++   Q   P           
Sbjct: 586 LDLREKTLEAEAASTAKSKFISSMSHELRTPLNAIYGFAQLGLMQSPAPALEETA--NLE 643

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I ++   ++ +V+DLLD+S +++ K  L  +PV +   +S    +VQ   +     +  
Sbjct: 644 EIIKASEHLMQLVDDLLDLSSLQAEKPLLDLKPVHVASLLSNCADMVQQQVSAHGQTLHI 703

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII-STTHTSNEEVILRVRDTGVG 747
           +   +   + AD R +KQ+ +N+LSNAI +   GG I + +        + L V DTG+G
Sbjct: 704 NAPLDTWHVWADKRRLKQVLINLLSNAIKYNRPGGDITLGALVVEDGARLRLYVTDTGMG 763

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           ++     +  +PF ++        +GTG+GL L + +     G     S    GT   I 
Sbjct: 764 ISPALQGELFRPFQRLGKENS-SIQGTGIGLVLCRDLALLMHGTMGFESHVEVGTTFWID 822

Query: 808 F 808
            
Sbjct: 823 L 823


>gi|221198619|ref|ZP_03571664.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia multivorans
           CGD2M]
 gi|221207850|ref|ZP_03580857.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia multivorans
           CGD2]
 gi|221172347|gb|EEE04787.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia multivorans
           CGD2]
 gi|221181070|gb|EEE13472.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia multivorans
           CGD2M]
          Length = 528

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 77/376 (20%), Positives = 148/376 (39%), Gaps = 20/376 (5%)

Query: 448 EIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
                +  +++ + +D  + +++ +G +++ N    ++ GY   +I+   F+ F      
Sbjct: 26  RFAEFRFQTVVASITDYAVFMLDTQGHVVTWNAGAERIKGYRASEIVGNHFSRFYPPEAV 85

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDIS 562
           +        +         E       K+  L    + I  +   S     +     D++
Sbjct: 86  AAGRPSY-GLREAATHGRFEDEGWRVRKDGSLFWASVTITAVRDESDQLCGFIKITRDMT 144

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E ++ +          E  +   S F+A ++HE+R  L  +     V+++         +
Sbjct: 145 ERRRLEE--------LETSTHRLSVFIAMLAHELRNHLAPLRHSVGVLQSLPDPAPALAQ 196

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             +    + R    +  +V+DLLD+ +I SGK+ L   PV++ + V+  +  VQ     +
Sbjct: 197 CRDA---VHRQVAQLTRLVDDLLDVGRITSGKVELEDRPVTVRDLVARGVESVQPKLATR 253

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
              I          +  D   + Q+  N+L NA  F+P GG+I IS        V +RV 
Sbjct: 254 EQQIHVDLPPEPIVLRGDDARLVQVLHNLLDNASKFSPRGGRIDISARVE-GPVVAIRVI 312

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKG 801
           D GVG+    LE     F Q   +     +G GLGL + ++ V+ + G     S  P  G
Sbjct: 313 DRGVGIAPGALESIFDLFEQ-EGAAHRPTDGFGLGLAICRSFVELHGGMISAESDGPGHG 371

Query: 802 TLIEIIFPLYDTSHPH 817
               I  P+   +   
Sbjct: 372 ATFIIRLPVERAARAE 387



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/307 (9%), Positives = 82/307 (26%), Gaps = 30/307 (9%)

Query: 58  NQESVSNTNYLDSENTFVFDPIPRTVR--FTWNIDAHGYLKEISEELPKTIGNYAFKMIG 115
              +    + L     F F  +  ++     + +D  G++   +    +  G  A +++G
Sbjct: 14  PSPAPDGGDLLHRFAEFRFQTVVASITDYAVFMLDTQGHVVTWNAGAERIKGYRASEIVG 73

Query: 116 MRLCDVSDILHI---DPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172
                      +    P+  + +       +  +      +G+  +  + + A  +   +
Sbjct: 74  NHFSRFYPPEAVAAGRPSYGLREA-ATHGRFEDEGWRVRKDGSLFWASVTITA--VRDES 130

Query: 173 REFSGFRGFGIVHVNRVDNDPRALG----KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228
            +  GF    I            L     +         HE++   + +      + S  
Sbjct: 131 DQLCGF--IKITRDMTERRRLEELETSTHRLSVFIAMLAHELRNHLAPLRHSVGVLQSLP 188

Query: 229 SPPPH------------LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFH 276
            P P              ++   V  L +        ++ E  P+   +  +   +    
Sbjct: 189 DPAPALAQCRDAVHRQVAQLTRLVDDLLDVGRITSGKVELEDRPVTVRDLVARGVESVQP 248

Query: 277 TINLNQYTKKQYFGT----LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP 332
            +   +             L+ +     + L +    +       G       V+   + 
Sbjct: 249 KLATREQQIHVDLPPEPIVLRGDDARLVQVLHNLLDNASKFSPRGGRIDISARVEGPVVA 308

Query: 333 FFVYSHG 339
             V   G
Sbjct: 309 IRVIDRG 315


>gi|222081275|ref|YP_002540638.1| two-component sensor histidine kinase protein [Agrobacterium
           radiobacter K84]
 gi|221725954|gb|ACM29043.1| two-component sensor histidine kinase protein [Agrobacterium
           radiobacter K84]
          Length = 625

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 92/508 (18%), Positives = 181/508 (35%), Gaps = 45/508 (8%)

Query: 320 NLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
           +   E +D   I    +  G +         L  +   + I            P+  D  
Sbjct: 2   DEIAEVLDSANIIVHGFD-GVISRWTTGCERLYGWSRQEAIGQVVHELLATVFPEPLDKI 60

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
             K           I                + +       ++  P          +  D
Sbjct: 61  RDKIARQVDWQGELIH--------HGRDGKPIVVASRWVVASSVDPARPVIVQTNTDISD 112

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
            +  +  +      L SIL    + + +I+  G I S + A  KLFGY  E++  K   +
Sbjct: 113 LKRIQADLAEREAHLRSILATVPESMVVIDEGGTIASFSSAAEKLFGYSAEEVYGKNVRM 172

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTL--EKITLGSTKEEKLLSLRIIIKK--LPFSSCYS 555
            +        + YL+  L+   R+ +   ++  G  K+  +  + + + +        ++
Sbjct: 173 LMPSPDREAHDGYLSHYLTTGERRIIGYGRVVSGQRKDGTVFPMELSVGEAIANGKRIFT 232

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
             + D++   + + +L  ++K+              ++H+    LT I G  E+I+ +  
Sbjct: 233 GFVRDLTSRHKIEEELRQSQKM-----EAVGQLTGGLAHDFNNLLTVISGNLEMIEAR-- 285

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
             L +P+ +        + +    +   LL   +    +  L+ + V + + VS    L+
Sbjct: 286 --LQDPKLLSLVLEAQAAADDGAKLTGQLLAFGR----RQPLNPKLVDIGQLVSSFSDLL 339

Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT----- 730
           +     + I +RT    ++   L D   ++   LN++ NA    P GG + I  +     
Sbjct: 340 R-RTLGETIELRTVVTGSMNEALVDGSQLQNALLNLVLNARDAMPRGGFLSIEISPVRLD 398

Query: 731 ---------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
                      + E V++ V DTGVGM++   E A +PF            GTGLGL + 
Sbjct: 399 ADYAQMYPQVRTGEYVLISVTDTGVGMSSETQEHAFEPFFTTKGMGA----GTGLGLSMV 454

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
                 + G   ++S   +GT I I  P
Sbjct: 455 YGFAKRSGGHVQLYSEIGQGTSIRIFLP 482



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 39/365 (10%), Positives = 92/365 (25%), Gaps = 17/365 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWY--- 144
           ID  G +   S    K  G  A ++ G  +  +      +  + ++   L          
Sbjct: 141 IDEGGTIASFSSAAEKLFGYSAEEVYGKNVRMLMPSPDREAHDGYLSHYLTTGERRIIGY 200

Query: 145 -GKTTLWPIEGTNLYVPIDLA-ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
               +    +GT    P++L+    I +  R F+GF     V      +      ++   
Sbjct: 201 GRVVSGQRKDGT--VFPMELSVGEAIANGKRIFTGF-----VRDLTSRHKIEEELRQSQ- 252

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
           K   + ++  G +        + S        R+++         A        +    L
Sbjct: 253 KMEAVGQLTGGLAHDFNNLLTVISGNLEMIEARLQDPKLLSLVLEAQAAADDGAKLTGQL 312

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
            +     P       I     +           + E    ++   + +L         L 
Sbjct: 313 LAFGRRQPLNPKLVDIGQLVSSFSDLLRRTLGETIELRTVVTGSMNEALVDGSQLQNALL 372

Query: 323 PETV---DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
              +   D  P   F+    +    +  +  +       +  +     T +     +  +
Sbjct: 373 NLVLNARDAMPRGGFLSIEISPVRLDADYAQMYPQVRTGEYVLISVTDTGVGMSSETQEH 432

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
           A +P    +           +      R       +    +       +P          
Sbjct: 433 AFEPFFTTKGMGAGTGLGLSMVYGFAKRSGGHVQLYSEIGQGTSIRIFLPALKARAAKEP 492

Query: 440 TRINK 444
            R  +
Sbjct: 493 PRAAE 497



 Score = 47.3 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/143 (13%), Positives = 41/143 (28%), Gaps = 10/143 (6%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151
            G +   +    +  G    + IG  + ++   +  +P + I D + RQ  W G+     
Sbjct: 19  DGVISRWTTGCERLYGWSRQEAIGQVVHELLATVFPEPLDKIRDKIARQVDWQGELIHHG 78

Query: 152 IEGTNLYV---PIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
            +G  + V    +  +++      R                    +A     +     + 
Sbjct: 79  RDGKPIVVASRWVVASSV---DPARPVI----VQTNTDISDLKRIQADLAEREAHLRSIL 131

Query: 209 EIKKGHSSVEKEKYDIFSQQSPP 231
                   V  E   I S  S  
Sbjct: 132 ATVPESMVVIDEGGTIASFSSAA 154


>gi|221234053|ref|YP_002516489.1| histidine protein kinase DivJ [Caulobacter crescentus NA1000]
 gi|220963225|gb|ACL94581.1| histidine protein kinase DivJ [Caulobacter crescentus NA1000]
          Length = 600

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 104/357 (29%), Positives = 182/357 (50%), Gaps = 11/357 (3%)

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
           L ++L+        +  +G + +   A     G    D++ +  T          +   +
Sbjct: 209 LETLLDGLPHLAIAVRGQGQVTAVRGAAP--PGVTRADLVNRGLTGAAAPGDRQRLTAAI 266

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH 573
            +              LG     ++++L +        +     + DI+  +  ++ L  
Sbjct: 267 AQAHREGSASLTFNPALGVE---RVVALDMHRV---APNQLVGVLRDITVERHREHALDQ 320

Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
           A+  AE  ++ ++ FLA +SHE+RTPL AI+GFS++++ + FGPL + RY EYA  I  S
Sbjct: 321 ARIDAEALAAGRARFLANMSHELRTPLNAIMGFSDIMRARMFGPLSD-RYAEYAELIHES 379

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693
           G  +LD++ND+LD+SKIE+ +  L        EAV  A+ L+++ ++   + +R      
Sbjct: 380 GGHLLDLINDVLDMSKIEAERFELQRGVFDAREAVQAAMRLLRVQSDTAGVQLRGVLPPG 439

Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753
              + AD R++KQI LN++SNA+ FTP GGQ+ + T H  +  + + V DTGVG++  +L
Sbjct: 440 ELEVDADRRALKQIVLNLVSNALKFTPRGGQVTV-TAHGYDGVLEIVVADTGVGISPEDL 498

Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           E+  +P+ Q   ++Q    GTGLGL L +A    + G+  I S    GT + +  P+
Sbjct: 499 ERLGRPYEQAGGAEQRA-RGTGLGLSLVRAFAQLHGGEMVIESRLGAGTTVSVRLPV 554


>gi|146292400|ref|YP_001182824.1| PAS/PAC sensor signal transduction histidine kinase [Shewanella
           putrefaciens CN-32]
 gi|145564090|gb|ABP75025.1| PAS/PAC sensor signal transduction histidine kinase [Shewanella
           putrefaciens CN-32]
          Length = 432

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 70/372 (18%), Positives = 152/372 (40%), Gaps = 33/372 (8%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           R    ++   + +     EA  D   +++ E  IL  N+    + G+       +     
Sbjct: 87  RRRVGQLAALLARFRQGAEALPDAAVVLDSEHNILWCNKLAQLILGFVWPQDNGQRIDNL 146

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
           +     S           L+L   +         +++LL +RI+           L   D
Sbjct: 147 IRHPDFSAYIKSAQYKEPLELPSPV--------SDKRLLEIRIMAY---GDRQLLLIARD 195

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I+  +Q +                + +F+A VSHE++TPLT + G+ E++++       +
Sbjct: 196 ITRIRQLEG--------------MRKEFVANVSHELKTPLTVLQGYLEMMQSM---AEPD 238

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIE-SGKMNLHFEPVSLDEAVSEAISLVQLYA 679
              ++    + +    +  +V  LL +S+IE +  +NL    V++ + +       +  A
Sbjct: 239 SMNVKPLALMQQQTQRMQSMVEQLLVLSRIEDAADINLENT-VNMSQLMEVLKEEAKAVA 297

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
            + R  +     + +     +   ++    N++SNAI +T  GG+I +     +   +  
Sbjct: 298 QD-RYELSFYCESGLDS-HGNELQLRSACSNLISNAIRYTEPGGKITVQWRSVATGGL-F 354

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V DTG G+    + +  + F ++ +++  +  G+GLGL + K  ++ +  +  I S   
Sbjct: 355 SVTDTGEGIAPQHIARLTERFYRVDSARSRQTGGSGLGLAIVKHALNHHHSELTITSEVG 414

Query: 800 KGTLIEIIFPLY 811
           KG+    + PL+
Sbjct: 415 KGSTFSFVIPLH 426


>gi|23501466|ref|NP_697593.1| sensor histidine kinase [Brucella suis 1330]
 gi|161618552|ref|YP_001592439.1| integral membrane sensor signal transduction histidine kinase
           [Brucella canis ATCC 23365]
 gi|225627084|ref|ZP_03785122.1| sensor histidine kinase [Brucella ceti str. Cudo]
 gi|254701372|ref|ZP_05163200.1| integral membrane sensor signal transduction histidine kinase
           [Brucella suis bv. 5 str. 513]
 gi|254703917|ref|ZP_05165745.1| integral membrane sensor signal transduction histidine kinase
           [Brucella suis bv. 3 str. 686]
 gi|254707707|ref|ZP_05169535.1| integral membrane sensor signal transduction histidine kinase
           [Brucella pinnipedialis M163/99/10]
 gi|254709710|ref|ZP_05171521.1| integral membrane sensor signal transduction histidine kinase
           [Brucella pinnipedialis B2/94]
 gi|254712867|ref|ZP_05174678.1| integral membrane sensor signal transduction histidine kinase
           [Brucella ceti M644/93/1]
 gi|254716779|ref|ZP_05178590.1| integral membrane sensor signal transduction histidine kinase
           [Brucella ceti M13/05/1]
 gi|256031201|ref|ZP_05444815.1| integral membrane sensor signal transduction histidine kinase
           [Brucella pinnipedialis M292/94/1]
 gi|256159299|ref|ZP_05457094.1| integral membrane sensor signal transduction histidine kinase
           [Brucella ceti M490/95/1]
 gi|256254609|ref|ZP_05460145.1| integral membrane sensor signal transduction histidine kinase
           [Brucella ceti B1/94]
 gi|256369016|ref|YP_003106524.1| sensor histidine kinase [Brucella microti CCM 4915]
 gi|260168337|ref|ZP_05755148.1| sensor histidine kinase [Brucella sp. F5/99]
 gi|260566834|ref|ZP_05837304.1| sensor histidine kinase [Brucella suis bv. 4 str. 40]
 gi|261757798|ref|ZP_06001507.1| sensor histidine kinase [Brucella sp. F5/99]
 gi|294851947|ref|ZP_06792620.1| two-component system protein [Brucella sp. NVSL 07-0026]
 gi|23347370|gb|AAN29508.1| sensor histidine kinase [Brucella suis 1330]
 gi|161335363|gb|ABX61668.1| integral membrane sensor signal transduction histidine kinase
           [Brucella canis ATCC 23365]
 gi|225617919|gb|EEH14963.1| sensor histidine kinase [Brucella ceti str. Cudo]
 gi|255999176|gb|ACU47575.1| sensor histidine kinase [Brucella microti CCM 4915]
 gi|260156352|gb|EEW91432.1| sensor histidine kinase [Brucella suis bv. 4 str. 40]
 gi|261737782|gb|EEY25778.1| sensor histidine kinase [Brucella sp. F5/99]
 gi|294820536|gb|EFG37535.1| two-component system protein [Brucella sp. NVSL 07-0026]
          Length = 609

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 92/349 (26%), Positives = 168/349 (48%), Gaps = 4/349 (1%)

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
             ++ EGI+ S +   +KL G   + +        +           L ++ +    + +
Sbjct: 211 FGLDIEGIVSSVDGETAKLLGVQPKMLEGTALIDRVHVADRVQYLSLLADLRAGMATRKV 270

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
           +            +      +        +L    +   ++  ++++  K   E E   K
Sbjct: 271 DVRLRSIE-NGNPVFRAYRFEGAGSDRAITLIGRSLEGEQKLLDEIAMLKAELESERIGK 329

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
              LA VSHE+RTPL +IIGFS+++ ++  G L + R  EYA  I +SG+ +L++VN +L
Sbjct: 330 GRLLATVSHELRTPLNSIIGFSDMLTHEIGGKLASDRQREYAGLIHQSGHYLLELVNAVL 389

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
           D S++E+G  ++  +     +AV    +++   A +K +       N +  ++AD R+V+
Sbjct: 390 DNSRLETGTYSIAPQSFVFRDAVEMCTAVMLPQAEKKGVAFCHRVGNGVGELVADRRAVQ 449

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNE---EVILRVRDTGVGMTNYELEKAMKPFGQ 762
           QI LN+ +NA+ FT SGG + I       +    +   V DTG+G+   +L++   PF +
Sbjct: 450 QILLNLATNAVKFTQSGGCVTIDAARVMADGCPMLEFSVSDTGIGIEPEDLQRIGTPFVR 509

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
             NS     EG+GLGL + K +V+ + G   + S P +GT++ I  PL 
Sbjct: 510 AGNSYTQAQEGSGLGLSVVKGLVELHQGSMQLKSRPGEGTVVMIRLPLA 558


>gi|317027779|ref|XP_001399982.2| histidine kinase D5 [Aspergillus niger CBS 513.88]
          Length = 1017

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 89/557 (15%), Positives = 188/557 (33%), Gaps = 84/557 (15%)

Query: 325 TVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
            ++  P+  F+     G + + N  F    + +  +        +          ++  +
Sbjct: 1   MLNSVPLHLFLAKPQSGEVIWTNSKFDAYRRSQPQEQKLRDPWQN----IHSSERDHVSQ 56

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
                    + I    R+     +        F      +   E +   G   +  +  I
Sbjct: 57  EWANALRTGSQITERVRVKRF-NDESAYRWFIFRANPLLSSTGEVLYWIGSFLDIHEQHI 115

Query: 443 NKRKMEIEVMQL------CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
            + K   E  +        +   +    +        ++  N       G  +ED L   
Sbjct: 116 AELKAAQEREKFATDAKYRAFSNSIPQIVFEATEYRGLIFVNEQWHLYTGQKLEDALNFG 175

Query: 497 FTVFLEQNTPSV-----------------------------------------MNHYLTE 515
           F   +  +                                             +   L E
Sbjct: 176 FAKHVHHDDLEKCGLLSLYLHESQKTGGAIDAGEAPAETTAAKNSQEKHLGQGVTPALEE 235

Query: 516 ILSLDLRQTLEKI---------TLGSTKEEKLLSLRIIIKKLP------FSSCYSLTMHD 560
           ++   +                    +K        + +  +         + +  T  D
Sbjct: 236 LVKRGVASVQRDENGRVFYSTELRLRSKGGDFRWHLVRLVCVETSSFGSGEASWYGTCTD 295

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I++ K  + +L+ A +    +   K+ F + +SHEIRTPL  I+G    I + +      
Sbjct: 296 INDRKNLERELNKAMQQLNNQMESKTKFFSNMSHEIRTPLNGILGTIPFILDTQLDT--- 352

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
                  + I  S   + ++V+++LD+S++E+GKM+L      +   + + I  V   A 
Sbjct: 353 -DQRRMLDTIQNSSTNLRELVDNILDVSRVEAGKMSLVNSWFHVRSVIEDVIDTVSSRAI 411

Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
           +K + I      ++P  ++ D   ++Q+ +N++ NA+ FT  G +I I  +   +    +
Sbjct: 412 DKGLEINYLMDVDVPPMVIGDRFRIRQVLINLVGNAVKFTAQG-EIHICCSIYHDASAQI 470

Query: 740 R---------VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
           +         V DTG G +  + E+ M+ F Q+  +   +  G+GLGL L+K +V+ + G
Sbjct: 471 KKTELLLNFDVVDTGKGFSARDAERLMQRFSQLGQNGSQQHAGSGLGLFLSKQLVEMHGG 530

Query: 791 KFYIFSTPAKGTLIEII 807
           K    S   +G      
Sbjct: 531 KLTPSSKEGQGAKFSFH 547


>gi|313117234|ref|YP_004044217.1| PAS domain S-box [Halogeometricum borinquense DSM 11551]
 gi|312294125|gb|ADQ68556.1| PAS domain S-box [Halogeometricum borinquense DSM 11551]
          Length = 730

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 106/698 (15%), Positives = 221/698 (31%), Gaps = 75/698 (10%)

Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK- 211
           EG N     +                 G         + DP A+ + L ++     +   
Sbjct: 62  EGRNFRTWHEQNKR-----------LTGVLTATDVVRNRDPEAIQRHLRQQLVFFPDATH 110

Query: 212 ---------KGHSSVEKEKYDIFSQQSPPPHLRM----KNKVSSLTEYYAHKDDVLKTEK 258
                        +  +E   + +   P            +      Y  +   ++ +  
Sbjct: 111 SIDYVNTTNNRILAGTREVDTLQTADFPDSSRVNTNLDPAEPLVTEPYLINNKTLVISYV 170

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
            P+    E ++    D      N  T  +   TL  +S            P     + + 
Sbjct: 171 RPVSGQPERAIILTMDLGAYGQNFRTHGRSELTLVVDSANRIIMSDEF-DPRYGVEYGQI 229

Query: 319 ENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST---------- 368
               P+          +         +PS  +    +  + +    G +           
Sbjct: 230 FERLPDQHGILQTARSIDPGE-----DPSGAMEVGDRPSELLSDGYGFNPDGYVVGYYYF 284

Query: 369 -------LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                  L     +     ++ V  Y +  T ++             N+         KA
Sbjct: 285 PDQDWVLLFYQSTVDSYGFVRAVQQYGTLVTVVSVLLIGVVGAILGRNTAVAVDRLTRKA 344

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIE-----VMQLCS--ILEATSDGIAIINREGII 474
            +          E   +D      +   E        L +  +++  SD I  ++  G I
Sbjct: 345 GRIESGDFDVDFETNRIDNIGQLYRAFNEMQCTIREHLRASALIDNASDLITQVDENGDI 404

Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
              + +   + GY  E +   P   ++  +  S ++  L      D              
Sbjct: 405 TFQSPSSHAILGYDPEQMDGTPLLSYVHPDDKSTVDSAL-----SDDENPRRIEFRMQDA 459

Query: 535 EEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
           +     L    +K+  +       +T HDI++  + + +L   K+  E+ +     F   
Sbjct: 460 DGDWRVLEGTCEKVTDNPFVTGVVVTCHDITDRIERQAELEETKRELERSNEALQQFAYI 519

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
            SH+++ PL  +  + + + +  +G   +    EY  +       + ++++ LL  S+++
Sbjct: 520 ASHDLQEPLRMVSSYLD-LLSSEYGDRLDEEANEYIEFAVDGAERMRNMIDGLLTYSRVK 578

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
           +      FEP+  +E + +    ++L    +   I T    + P I AD   ++Q+  N+
Sbjct: 579 TRAG--DFEPIDPNEVIDDVCLDLKLLIENEDATITTD---SFPTIRADENQLRQVFQNL 633

Query: 712 LSNAIHFTPSGG-QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           + NAI        +I I  T   +      V D GVG+   + EK  + F Q        
Sbjct: 634 IKNAIEHAGEDPPEIHIGFTELPDAY-RFSVEDNGVGIPENQQEKIFEIFEQA----SGE 688

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
             GTG+GL + K +V+ + G  ++ S+  K T      
Sbjct: 689 ESGTGIGLAVCKRIVERHGGDIWVESSVGKQTTFYFTI 726


>gi|37676307|ref|NP_936703.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
 gi|37200848|dbj|BAC96673.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
          Length = 1223

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 90/381 (23%), Positives = 163/381 (42%), Gaps = 22/381 (5%)

Query: 436 EDVDTRINKRKM-EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED--- 491
           + +       ++ + ++  L  +L+     I+I + +G ++ +N+A    F    E+   
Sbjct: 547 DSLRQSEKVVELSQHQISWLTKLLDTIPSMISISDSKGRLVLSNQAYQASFRQCRENGCV 606

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
            L    +              + ++ + +         +             I+      
Sbjct: 607 DLESVCSFLHLSEREQAEFEEIIQVPASECGMGERFYHVTRKA---------ILHDQMEM 657

Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
           + Y     DIS+ KQ +  L  + + A +    ++ FLA VSHE+RTP+ A++G  E++ 
Sbjct: 658 THYLTLFSDISDLKQTELALRESNRAALQAVEARNQFLAVVSHELRTPIAAMLGLMEILS 717

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
           ++    L N    +  +   RS   +   VND+LD SKIE+ ++ L  +   + E +   
Sbjct: 718 HR----LSNSESQQLLDNAIRSAERLSLHVNDILDFSKIEASQLQLDIQEYRIIEELGPV 773

Query: 672 ISLVQLYANEKRILIRTSFANNIPRILA--DLRSVKQIALNILSNAIHFTPSGGQIIIST 729
           +   +  A  K +     +      I A  D   V QI  N+LSNA+ FT  G QI +  
Sbjct: 774 LRSFEASAQLKGLQFNVHWQPTA-YIDAQYDALRVNQIVSNLLSNAVKFTEVG-QIKVEI 831

Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
               N  + + + DTG GMT  +L+   +PF Q   S   R  GTGLG+ + K+++D   
Sbjct: 832 ACDENA-LSIEIVDTGCGMTEAQLDCVFQPFVQADTSITRRFGGTGLGMSIVKSLLDLMG 890

Query: 790 GKFYIFSTPAKGTLIEIIFPL 810
           G     S   +GT + +  P+
Sbjct: 891 GTIAFHSELEQGTKVSVWIPV 911


>gi|83953721|ref|ZP_00962442.1| PAS [Sulfitobacter sp. NAS-14.1]
 gi|83841666|gb|EAP80835.1| PAS [Sulfitobacter sp. NAS-14.1]
          Length = 698

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 105/658 (15%), Positives = 215/658 (32%), Gaps = 60/658 (9%)

Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE 245
             R   +     + L  +       +   +  E+    + + +     +        L  
Sbjct: 56  EVREQFEEIIHERSLALRELATFISENPFAKQEEFTQRVQNIREIDDTVINVAAAPELVV 115

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
              H              + E   P  E    +     T             +     + 
Sbjct: 116 TLIHPLAPNMGALGLDYRTNEDQFPGIERMLDLGKELMTGPVDLVQ----GGKGLILRAP 171

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365
              P      +   + +   +         Y    +                      G 
Sbjct: 172 VYWPDPDFATEGDVDGSKRQLWGIVSLVLDYDQFLINSGIREAEERYDILIHAASPQVGV 231

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
              +          A        +     +    +   +              ++A    
Sbjct: 232 GPQMFTYGDRGLLEADTV-----TLEFDFSFEEWMLEARTKGGWPKHAPDQWSKRALIAS 286

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
             +   G     +     +++ E+    L S +EA +DG  + + +  +L +N    +++
Sbjct: 287 AGLMLLGTLLYVLQVSERRKRAEV---LLSSGIEALNDGFVMFDAQDRLLLSNSKYKEMY 343

Query: 486 GYPVEDIL-RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE-------EK 537
             P E +    PF   L     S             + + L       T E        +
Sbjct: 344 ELPSEVLKPGAPFAELLRIGVKSKQFPMGRYNEEEWIERRLAIHRENRTSETEQHLSGGR 403

Query: 538 LLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
           ++              Y     D++E       LSHAK  AE  S  K+DF+  +SHE+R
Sbjct: 404 VIKASDRPL---ADGSYVGLRVDVTE-------LSHAKDAAEAASKAKTDFMGVLSHELR 453

Query: 598 TPLTAIIGFSEV-------------IKNQRFGPLGNPRYIEYANYID-----------RS 633
           TPLT I+G +++             +K    G +G+       + +            +S
Sbjct: 454 TPLTVIMGVAQLSRNARMLSSSKALLKGYEDGEIGHAEAKRLLDEMYDQLSGLMNRLVQS 513

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693
           G  +L ++N++LD++KIESG + +   P ++ + V   I  ++  +++K +        +
Sbjct: 514 GEHLLHLINEILDVAKIESGSLVIEPSPCAVQDIVDPVIEQLRTLSSKKGLAFDVVQEAD 573

Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI-LRVRDTGVGMTNYE 752
              + AD    +QI  N++ NAI FT +G    +        +V+   V D+G G+   E
Sbjct: 574 --MVFADKVRARQILFNLIGNAIKFTDTG---FVRLVVKPVGDVVSFEVHDSGAGIPEAE 628

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           L+   + F Q+ ++   R  GTG+GL +++++ +   G   + S   +G+   +  P+
Sbjct: 629 LQSIFEVFYQVDSTATRRAGGTGMGLAISRSLAEMQGGSLSVSSVVGQGSCFILTLPI 686


>gi|255658343|ref|ZP_05403752.1| sensory transduction histidine kinase [Mitsuokella multacida DSM
           20544]
 gi|260849667|gb|EEX69674.1| sensory transduction histidine kinase [Mitsuokella multacida DSM
           20544]
          Length = 592

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 80/385 (20%), Positives = 156/385 (40%), Gaps = 26/385 (6%)

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
              ++F   +        ++  +I + + E E M L  IL  T + I +I+  G+I+ TN
Sbjct: 219 HSGDEFDTLVQTINQLTRNLSAKIQESQAEAEKMTL--ILNNTDNAIMLIDERGLIVGTN 276

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
           R   + F      + R    V               +  +  +  T+   +   T     
Sbjct: 277 RQAEETFHLQGNALHRHSIHVIGSAELSEAAQEVCRQGKAQTITLTIHDGSAAQT----- 331

Query: 539 LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
             + +               HDIS              + ++ +  +++F++  +HE+ T
Sbjct: 332 FQVFLAPFYDGPDELVLAVFHDIS--------------LLQEINQRQAEFVSNAAHELAT 377

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES--GKMN 656
           PLT+I GF+E + +  F          +   I R    +  ++  LL++++++S  GK  
Sbjct: 378 PLTSISGFAETLLDDDF--KDPEASRHFIGIIYREAQRMNSLMKGLLELARLDSTHGKTK 435

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716
           +   PV ++  + + +  +Q  A  K   +    A     +LA      QI  N+  NAI
Sbjct: 436 IKRRPVEVNTILHQTVEQLQAKAKSKEQTLIEEPAPIPLYVLAAPELFGQILYNLTENAI 495

Query: 717 HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
            +T  GG I +  +  +  ++ L V D G+G+   +L +    F ++  ++  +  G G+
Sbjct: 496 KYTQEGGTIHLK-SRQAANQLELTVADNGIGIGPADLPRIFDRFYRVDKARARKSGGNGI 554

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKG 801
           GL L K +V+   G   + S   KG
Sbjct: 555 GLSLVKFLVELFDGTIEVTSQLEKG 579


>gi|322420325|ref|YP_004199548.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M18]
 gi|320126712|gb|ADW14272.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M18]
          Length = 678

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 82/559 (14%), Positives = 171/559 (30%), Gaps = 42/559 (7%)

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
           SL    D   +    ++  +  G            ++      L       +    ET D
Sbjct: 4   SLQNTLDVPKLQELLHSPDRLPGPACAVVDAEGAVIAS---ERLCEVVQRAKREWEETFD 60

Query: 328 KCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
             P    +    + +   N +   L      D +                   A + +  
Sbjct: 61  AVPDLISIIGTDHGIRRVNRAMADLLGVHPRDLVGKKCYEVLHRTDAPHPGCPAARAMES 120

Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
              +        RL           + +       +          +  +  + R  +  
Sbjct: 121 CIVEEGEFDEE-RLQR---------SFSVTASPVLDSSGRVTSCVHVARDITERRKKEEA 170

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
           +      L +I +     +   +++      N+A  + FG    ++L       L +   
Sbjct: 171 LTASERFLRAITDNIPGMVGYWDKDLRCGFANQAYREWFGRDGREMLGMRIQDLLGEELF 230

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQ 566
                Y+   L  + ++   ++              I       +  + + + D++E K 
Sbjct: 231 KRNEPYMLRALEGETQRFERELVKADGSTGYTWPNYIPDVVDGSTRGFFVLVTDVTELKL 290

Query: 567 EKNKLSHAKKIAEKESSHKS--DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
            +   +  +   ++    +S       V+H+    LT I+ ++++      G   +  + 
Sbjct: 291 AEEAKARLEGQLQQAQKMESVGRLAGGVAHDFNNQLTVIMAYADM---GLMGLDPSHPFY 347

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
                I R+      +   LL  ++    +  +  + + L++ V + + +++     ++I
Sbjct: 348 AMFQEIGRAAERSAGLTQQLLAFAR----QQPVTPKLLDLNDTVRDMLKMLRRLI-GEQI 402

Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT------------ 732
            +    A    R+  D   V QI  N+  NA       G+I I T               
Sbjct: 403 HLTWRAAEEPCRVKMDPSQVDQILANLCINARDAVGDFGEIRIETGMESFPHGKSKEEQE 462

Query: 733 --SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
               + V L V D G GM    LE+  +PF          G+GTGLGL     +   N G
Sbjct: 463 VQPGDYVFLCVTDNGCGMDAATLEQIFEPFFTTK----EVGKGTGLGLSTVYGVTRQNGG 518

Query: 791 KFYIFSTPAKGTLIEIIFP 809
              + S   +GT   I  P
Sbjct: 519 FIEVKSQAGRGTSFRIYLP 537



 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/316 (6%), Positives = 72/316 (22%), Gaps = 14/316 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH-IDPNNHIGDLLKRQNTWYGKT 147
           I     ++ ++  +   +G +   ++G +  +V        P       ++      G+ 
Sbjct: 69  IGTDHGIRRVNRAMADLLGVHPRDLVGKKCYEVLHRTDAPHPGCPAARAMESCIVEEGE- 127

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                +   L     + A P+   +   +      +                 ++    +
Sbjct: 128 ----FDEERLQRSFSVTASPVLDSSGRVT--SCVHVARDITERRKKEEALTASERFLRAI 181

Query: 208 HEIKKGHSSVEKEKYDIFSQQSP--PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
            +   G      +                R   ++  +       +++ K  +  +L + 
Sbjct: 182 TDNIPGMVGYWDKDLRCGFANQAYREWFGRDGREMLGMRIQDLLGEELFKRNEPYMLRAL 241

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
           E      E                         +  +       +     +E +      
Sbjct: 242 EGETQRFERELVKADGSTGYTWPNYIPDVVDGSTRGFFVLVTDVTELKLAEEAKARLEGQ 301

Query: 326 VDKCP--IPFFVYSHGNLFYANPSFLLLTKYKSVDD--IEIAGGLSTLLDAPKLSDNNAI 381
           + +          + G     N    ++  Y  +    ++ +     +      +   + 
Sbjct: 302 LQQAQKMESVGRLAGGVAHDFNNQLTVIMAYADMGLMGLDPSHPFYAMFQEIGRAAERSA 361

Query: 382 KPVMLYRSDRTCIAAS 397
                  +       +
Sbjct: 362 GLTQQLLAFARQQPVT 377


>gi|254409998|ref|ZP_05023778.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196183034|gb|EDX78018.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 863

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 104/598 (17%), Positives = 213/598 (35%), Gaps = 37/598 (6%)

Query: 236 MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG-TLQN 294
              +  SL     ++  +  T         +    E  +  +I       +      +Q 
Sbjct: 284 QPRQWQSLEIDLLYQLAIQVTIAIHQSQLYQQLQTELIERQSIENQLRQARDQLEIRVQE 343

Query: 295 NSKESFEY-----LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFL 349
            + E  +                A     E      +   PI  F          N  + 
Sbjct: 344 RTAELMQTNADLQTQIHERREAEAALRISEERFRVALHNSPITVFNQDT------NLRYT 397

Query: 350 LLTKYKSV---DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
            +    S    D +     L         +  NA K + +     T      +  +I  +
Sbjct: 398 WVYNPASRINTDALIGKSELEMF------APENAQKLMPIKHRVLTTGVGERQEISIIVD 451

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
            +             N   E +          + RI ++++      +  I +A    + 
Sbjct: 452 GKVRYY-DLTVEPLRNHAEEVVGITCAATNITEIRIREQELRESERFIQRIADAMPTALY 510

Query: 467 IINR-EGIILSTNRAVSKLFGYPVEDILRKPFTV---FLEQNTPSVMNHYLTEILSLDLR 522
           + +  E   + +N+ +++L GY  E+I     T     +  +  S     +    +    
Sbjct: 511 LYDLIEKRHIYSNQQITQLIGYSPEEIQAMAPTFPQNLIHPDDQSKCTTAIKRFTTAKEG 570

Query: 523 QTLEKITLGSTKEEKLLSL---RIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKI 577
           + +E       K  +   L    ++  +           T  DI+E KQ +  +  A   
Sbjct: 571 EIIETEYRIQHKSGEWRWLYSREMVFTRTANGLPQQILGTAQDITEHKQAEL-IRLALAQ 629

Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
            ++    + +F +  SHE RTPL+ I+   + +    +    + +     + I+ +   +
Sbjct: 630 EQELRQLQLNFFSMASHEFRTPLSTILASVQ-LLKYYYPEGSDHKIRRNIDRIETTAKTM 688

Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697
             ++ND+L I++ E+GK+     P  L++     +  +Q+ A     LI     N    +
Sbjct: 689 TQLLNDILTINRAETGKLEFTPRPFELEKFCCHLVEEMQVNA-GSNYLINFISQNQYIIV 747

Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757
             D + ++ I +N+LSNAI ++P G QI +  T + +     +++D+G+G+   + +K  
Sbjct: 748 CLDEKLLRSILMNLLSNAIKYSPLGSQIDLILTCSQS-TATFQIKDSGIGIPIEDQKKLF 806

Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
             F +   +      GTGLGL + +  +D   G   + S    GT + I+ PL+D S 
Sbjct: 807 GIFHR--GTNIGNIPGTGLGLAVVRKCLDIQGGMISVNSEVGVGTTMTIMIPLHDQSA 862



 Score = 47.3 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 27/332 (8%), Positives = 87/332 (26%), Gaps = 27/332 (8%)

Query: 22  TQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQN------QESVSNTNYLDSENTFV 75
           T+ + ++ I+N     + + E    +   +   T+ +      +   +      SE  F 
Sbjct: 318 TELIERQSIENQLRQARDQLEIRVQERTAELMQTNADLQTQIHERREAEAALRISEERFR 377

Query: 76  FDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD 135
                  +   +N D +     +     +        +IG    ++    +      I  
Sbjct: 378 VALHNSPIT-VFNQDTNLRYTWVYNPASRI---NTDALIGKSELEMFAPENAQKLMPIKH 433

Query: 136 LLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA 195
            +        +     ++G   Y  + +   P+ +   E  G                  
Sbjct: 434 RVLTTGVGERQEISIIVDGKVRYYDLTV--EPLRNHAEEVVGIT--CAATNITEIRIREQ 489

Query: 196 LGKRLDKKFSHLHEIKKGHS---SVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA---- 248
             +  ++    + +          + ++++   +QQ          ++ ++   +     
Sbjct: 490 ELRESERFIQRIADAMPTALYLYDLIEKRHIYSNQQITQLIGYSPEEIQAMAPTFPQNLI 549

Query: 249 -HKDDVLKTEKYPLLTS--EESSLPEQEDFHTINLNQYTK-KQYFGTLQNNSKESFEYLS 304
              D    T      T+  E   +  +      +        +     +  +    + L 
Sbjct: 550 HPDDQSKCTTAIKRFTTAKEGEIIETEYRIQHKSGEWRWLYSREMVFTRTANGLPQQILG 609

Query: 305 HRNHPSLSAYFDEGENLT--PETVDKCPIPFF 334
                +     +         + + +  + FF
Sbjct: 610 TAQDITEHKQAELIRLALAQEQELRQLQLNFF 641


>gi|149189915|ref|ZP_01868194.1| sensory box histidine kinase/response regulator [Vibrio shilonii
           AK1]
 gi|148836230|gb|EDL53188.1| sensory box histidine kinase/response regulator [Vibrio shilonii
           AK1]
          Length = 1202

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 80/250 (32%), Positives = 133/250 (53%), Gaps = 8/250 (3%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E      +L  +    +  S  KSDFLA +SHEIRTP+ AIIG S +    +     + +
Sbjct: 467 ELHIVTEELEESNIQTQNASQAKSDFLANMSHEIRTPMNAIIGMSHLALETKL----DNK 522

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
              Y + ++ S   +L I+ND+LD SKIE+GK+ +     SLD  + E ISL+   A +K
Sbjct: 523 QRHYISKVNSSAQALLGIINDILDFSKIEAGKVEIESINFSLDSVLEEVISLIDDSAKQK 582

Query: 683 RILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTT--HTSNEEVI 738
           ++ +    A+++P +++ D   +KQ+  N+ SNA+ FT +G  ++ +ST        ++ 
Sbjct: 583 KLSLIIDVASDVPDQLIGDPLRIKQVLTNLTSNAVKFTETGEVRVKVSTAMMRERECKIN 642

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
             V+DTG+GMT  +++   + F Q  +S   +  GTGLGL + K +V+   GK  + S  
Sbjct: 643 FAVKDTGIGMTREQIDSLFQSFSQADSSTTRKYGGTGLGLSITKNLVELMGGKVSVESRL 702

Query: 799 AKGTLIEIIF 808
            +G       
Sbjct: 703 GEGARFSFSL 712


>gi|189424887|ref|YP_001952064.1| multi-sensor signal transduction histidine kinase [Geobacter
           lovleyi SZ]
 gi|189421146|gb|ACD95544.1| multi-sensor signal transduction histidine kinase [Geobacter
           lovleyi SZ]
          Length = 503

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 85/472 (18%), Positives = 167/472 (35%), Gaps = 49/472 (10%)

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK-ANQ 423
            L TLL    +        + L        +   R   +    +    +T       A  
Sbjct: 26  ALFTLLAGGAIFLLERSSHLDLLYKFGKIQSIDER-SPLTIALQQHQLVTISAVTLLALL 84

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI---LEATSDGIAIINREGIILSTNRA 480
               +       +  D  +  +        L SI   L++T +GI   + EG  +  NR+
Sbjct: 85  IAAPIAWMRALKQRNDLIVEHQN----RENLRSIKLLLDSTIEGIYGTDEEGRCILANRS 140

Query: 481 VSKLFGYPVEDIL-RKPFTVFLEQNTP-----SVMNHYLTEILSLDLRQTLEKITLGSTK 534
            ++L GY   ++L  K     +  +                +++  +   L    +   +
Sbjct: 141 CARLLGYSAPELLLGKNMHQLMHHSHADGTAYPETECRAHRLITTGVAPALVTDEVFWRQ 200

Query: 535 EEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
           +     +   +  +           T  DISE +Q +++L HA+K+              
Sbjct: 201 DGSAFPVSYSVHPIQEQDRIIGMVCTFVDISERRQLEDQLRHAQKM-----EAAGQLAGG 255

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           ++H+    L  I G +++++        +P        I ++      +   +L  S+  
Sbjct: 256 IAHDFNNILQIISGNTQILQYDLKQTNPDPPQ---LLEILKAVERGTALTRSMLAFSR-- 310

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
             K  ++  P+ L++ V ++  L+     +K   ++   A     I AD   ++Q+  N+
Sbjct: 311 --KQTINSIPLELNQLVKDS-QLLAQKLLQKNTTLQLDLAETALIITADEVLLQQVLFNL 367

Query: 712 LSNAIHFTPSGGQIIISTTHT--------------SNEEVILRVRDTGVGMTNYELEKAM 757
           ++NA    P+GG I I+T                      +L V+DTG G+     +K  
Sbjct: 368 ITNARDAMPTGGTITIATAERLLDEQSTGGAKDRVPGTYAVLMVQDTGQGIPEEIRQKIF 427

Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +PF          G+GTGLGL +    V  + G   + S    G+   +  P
Sbjct: 428 EPFFTTK----EVGKGTGLGLAMVYGTVKQHGGFVQVESKAGLGSCFSVFLP 475



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/130 (13%), Positives = 35/130 (26%), Gaps = 14/130 (10%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFK-MIGMRLCDVSDILHIDPNN------HIGDLLK 138
            +  D  G     +    + +G  A + ++G  +  +    H D             L+ 
Sbjct: 125 IYGTDEEGRCILANRSCARLLGYSAPELLLGKNMHQLMHHSHADGTAYPETECRAHRLIT 184

Query: 139 RQNTWYGKT--TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRAL 196
                   T    W  +G+    P+  +  PI  ++R   G                   
Sbjct: 185 TGVAPALVTDEVFWRQDGSAF--PVSYSVHPIQEQDR-IIGM--VCTFVDISERRQLEDQ 239

Query: 197 GKRLDKKFSH 206
            +   K  + 
Sbjct: 240 LRHAQKMEAA 249


>gi|319788264|ref|YP_004147739.1| PAS/PAC sensor signal transduction histidine kinase
           [Pseudoxanthomonas suwonensis 11-1]
 gi|317466776|gb|ADV28508.1| PAS/PAC sensor signal transduction histidine kinase
           [Pseudoxanthomonas suwonensis 11-1]
          Length = 802

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 106/766 (13%), Positives = 220/766 (28%), Gaps = 86/766 (11%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTW-YGKTTLWPIE 153
           L   ++     +G      +G  L +V   L  D        +    TW          +
Sbjct: 67  LLFYNDAYLPVLGVKEPTALGRPLAEVWYELWEDVRAMAESAMSGTATWVEDMYLRLERK 126

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
           G            P+   + +        I H                 + + + +    
Sbjct: 127 GVAEDTWWTFTYSPVRQADGKVVAM--LAITHETTRRVVTERRLADERARLARIFDQAPA 184

Query: 214 HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL----TSEESSL 269
             ++ +     F   +      +               +V++    P+L     S  + +
Sbjct: 185 FMAMLRGPEHRFEFANAAYLRLVGRDDLVGKPVAEALPEVVRQGWMPVLDEVLASGRAHV 244

Query: 270 PEQEDFHTINLNQYTK------------------------------KQYFGTLQNNSKES 299
                +         +                              +          +  
Sbjct: 245 ENDARYTAEPEGGTPQTHYLDFVFHPFTDQDGSVGGIVVVGMDNTERTRNEKALRERESE 304

Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDD 359
            E L+      ++    E       T D   +   +   G L  +NP++  +  +   + 
Sbjct: 305 LEALNSDLERRVAEQARERSLNWQVTPDMLGV---LNRDGILERSNPAWERVLGWTREEL 361

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
                 +  LL         A +      +    +    R+ T   +             
Sbjct: 362 --ALMPIRALLHPDDRESAAAARE--RLHAGEPLLGFECRMRT--RDGGYRTLSWV---- 411

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
                P+         +    R+    +     QL ++ E +     +   +G +L  N 
Sbjct: 412 ---ATPQEGRFYCSARDVTAHRMAVAALAESQAQLRNLFETSFQLQVMCALDGTLLDANE 468

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE-ILSLDLRQTLEKITLGSTKEE-K 537
               + G    +++ +PF      +    M   +   +L     + +            +
Sbjct: 469 TALAMIGARRGEVVGRPFWDTPWFSGTPGMPERIRAGVLRAAAGELVHDELEVDLPGGHR 528

Query: 538 LLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
           +L L +                  DI++ +  +  L  ++K+              V+H+
Sbjct: 529 VLELSLRPFHGADGRITGVVQEAIDITQRRTAEEALRQSQKL-----EAMGQLTGGVAHD 583

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
               L  I+   ++  + +  P    R         +S      +V  LL  ++    K 
Sbjct: 584 FNNLLAPIMAALDLAADPQANP---ERRARTVAVAQQSAERAAMLVQRLLAFAR----KQ 636

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715
            L    V +   +     L++   +  RI +        P  + D   ++   LN+  NA
Sbjct: 637 PLQTVEVDVPALLEGIGGLMRSSFDP-RIRVEVDADPGTPPAVGDRNQLEMALLNLGVNA 695

Query: 716 IHFTPSGGQIII------------STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
                 GG + +            S+T    +  ++ V DTGVGM     E+A++PF   
Sbjct: 696 RDAMSEGGTLTLASRGAEIVDGIASSTLRPGQYAVITVADTGVGMDAATRERAIEPFF-- 753

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             S +  G+GTGLGL +A  +     G  +I S P +GT+IE+  P
Sbjct: 754 --STKGIGKGTGLGLSMAHGLALQLGGCLHIDSAPGEGTMIELWLP 797



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 41/396 (10%), Positives = 100/396 (25%), Gaps = 41/396 (10%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTT 148
                 +  +    + +G     ++G  + +    +        + ++L           
Sbjct: 191 GPEHRFEFANAAYLRLVG--RDDLVGKPVAEALPEVVRQGWMPVLDEVLASGRAHVENDA 248

Query: 149 LW---PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
            +   P  GT     +D    P   ++    G    G+   N          +  + +  
Sbjct: 249 RYTAEPEGGTPQTHYLDFVFHPFTDQDGSVGGIVVVGM--DNTERTRNEKALRERESELE 306

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPP----------------------PHLRMKNKVSSL 243
            L+   +   + +  +  +  Q +P                          R +  +  +
Sbjct: 307 ALNSDLERRVAEQARERSLNWQVTPDMLGVLNRDGILERSNPAWERVLGWTREELALMPI 366

Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN-SKESFEY 302
                  D          L + E  L  +    T +    T        +      + + 
Sbjct: 367 RALLHPDDRESAAAARERLHAGEPLLGFECRMRTRDGGYRTLSWVATPQEGRFYCSARDV 426

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEI 362
            +HR   +  A          ET  +          G L  AN + L +   +  + +  
Sbjct: 427 TAHRMAVAALAESQAQLRNLFETSFQLQ--VMCALDGTLLDANETALAMIGARRGEVVGR 484

Query: 363 AGGLSTLLDA-PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
               +      P + +      +     +         L          L ++  PF  A
Sbjct: 485 PFWDTPWFSGTPGMPERIRAGVLRAAAGELVHDELEVDL----PGGHRVLELSLRPFHGA 540

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
           +     + Q  I  +    R  +  +     +L ++
Sbjct: 541 DGRITGVVQEAI--DITQRRTAEEALRQS-QKLEAM 573



 Score = 61.2 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 38/457 (8%), Positives = 105/457 (22%), Gaps = 42/457 (9%)

Query: 36  TEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYL 95
           TE+++ E    +   +    + + E        +    +   P    V     ++  G L
Sbjct: 289 TERTRNEKALRERESELEALNSDLERRVAEQARERSLNWQVTPDMLGV-----LNRDGIL 343

Query: 96  KEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGT 155
           +  +    + +G    ++  M +  +      +      + L       G          
Sbjct: 344 ERSNPAWERVLGWTREELALMPIRALLHPDDRESAAAARERLHAGEPLLGFECRMRTRDG 403

Query: 156 NLYV--PIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
                  +   A P   +   F     +             A       +  +L E    
Sbjct: 404 GYRTLSWV---ATP---QEGRF-----YCSARDVTAHRMAVAALAESQAQLRNLFETSFQ 452

Query: 214 HSSVEKEKYDIFSQQSPPP---HLRMKNKVSS---LTEYYAHKDDVLKTEKYPLLTSEES 267
              +      +             R    V      T +++    + +  +  +L +   
Sbjct: 453 LQVMCALDGTLLDANETALAMIGARRGEVVGRPFWDTPWFSGTPGMPERIRAGVLRAAAG 512

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP--ET 325
            L   E    +       +                +      +     +E    +   E 
Sbjct: 513 ELVHDELEVDLPGGHRVLELSLRPFHGADGRITGVVQEAIDITQRRTAEEALRQSQKLEA 572

Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
           + +       +   NL     + L L      +    A  ++    + + +     + + 
Sbjct: 573 MGQLTGGVA-HDFNNLLAPIMAALDLAADPQANPERRARTVAVAQQSAERAAMLVQRLLA 631

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
             R           +  +       L  +        +   +        +     +   
Sbjct: 632 FARKQPLQT-VEVDVPAL-LEGIGGLMRSSFDPRIRVEVDADPGTPPAVGDRNQLEMALL 689

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
            + +         +A S+G       G +   +R   
Sbjct: 690 NLGVNAR------DAMSEG-------GTLTLASRGAE 713


>gi|295084125|emb|CBK65648.1| Signal transduction histidine kinase [Bacteroides xylanisolvens
           XB1A]
          Length = 513

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 95/509 (18%), Positives = 177/509 (34%), Gaps = 49/509 (9%)

Query: 323 PETVDKCPIPFFVYSH-GNLFYANP-SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
            E ++  P    ++   G +   N  +F  L  + SV+D+      + L       ++  
Sbjct: 25  DELLNILPDGVIIFDTNGEVIQLNQQAFAELHIHPSVNDMLPFP-TNRLFKLLNKKEDIL 83

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
              +   R      +        +        +        ++   N             
Sbjct: 84  STILEKIRQGENTYSLPEHTFMQEQVDYTQFPIRGEFATIRDRTNLNK-ILFFFRNITVE 142

Query: 441 RINKRKMEIEVMQLCSILEATSDGI-----------AIINREGIILSTNRAVSKLFGYPV 489
              +  +   + +           I             ++             +  G P 
Sbjct: 143 LTQEYILNTALQRTR---------IYPWYYDISRSEFTLD---------DRYFEHLGIPA 184

Query: 490 ED---ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
            +   +  + +   +  +    M       LS +              +           
Sbjct: 185 GENNTLTMEEYVNMIHPDDRQPMADAFVVQLSGNTTFDKTVPFRLRRGDGTWEWFEGQST 244

Query: 547 KLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
            +   S            I E+K  +N L  A+K AE+    K  FLA +SHEIRTPL A
Sbjct: 245 YIANISGHPYRLVGICLSIQEYKDIENTLIEARKKAEESDRLKMAFLANMSHEIRTPLNA 304

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           I+GFS+VI +  +  L      ++   I  +   ++ +++D+LD+SKIES  +   F   
Sbjct: 305 IVGFSDVIGST-YDELSEEERADFVRLISINSEHLVRLIDDILDLSKIESNTIKFTFSNC 363

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
           SL+  + +     Q       I I++   +    I  D+  +KQ+  N ++NA  FT  G
Sbjct: 364 SLNSLMMDIEKE-QAMKPISEIEIKSLLPDEDVYINTDITRLKQVICNFINNARKFTQKG 422

Query: 723 GQIII--STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
             I    +  + + + V + V DTG G+    L +    F ++   +    +GTGLGL +
Sbjct: 423 -YIHFGHTLDNRNADSVQIFVEDTGSGIPQECLNEIFDRFYKVDTFK----QGTGLGLSI 477

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            K +V+   G   + S   KG+   +  P
Sbjct: 478 CKTIVEHLQGDISVKSEIGKGSCFTVTLP 506


>gi|289449713|ref|YP_003475160.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain-containing
           protein [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289184260|gb|ADC90685.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 625

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 79/364 (21%), Positives = 142/364 (39%), Gaps = 27/364 (7%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
             +E E  +L  IL   ++GI     +  +   N    + F       L         ++
Sbjct: 245 ADLEAESNRLQQILNGLNEGIIAYTAKLHLAHLNPVFREYFSECQNLELGSSINDLPVED 304

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564
               +   + E ++    Q +   T+   +      L ++               D+++ 
Sbjct: 305 ----IREAINEAVATGTTQYI---TISVGELLLFGQLLLLHSADKTFQGVVGLFRDVTKE 357

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           +Q +                + D+++ VSHE++TPLTAI    E I +         R  
Sbjct: 358 QQLEQT--------------RRDYVSNVSHELKTPLTAIRCMVEPIIDGLI--KDPDRLQ 401

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
            Y + I      +  +++D+L++S+++SGK  +  EP  L   +    +     A EK+I
Sbjct: 402 RYYHIIYDEVLRMARLIDDMLELSRLQSGKAVIELEPCQLQTLLENLYAKFSSVAKEKQI 461

Query: 685 LIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
                  N N+P    +   ++QI    L NA  FTP GG II+      +  +I+ V+D
Sbjct: 462 NFALELPNCNLPLAYVNPDRIEQIIYVFLDNASKFTPPGGDIILRAALKDD-RIIIVVQD 520

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TG G+   +     + F +   S      GTGLGL + K + +    K ++ S    G  
Sbjct: 521 TGKGIAAEDKAHVFERFYKADKSHGSI--GTGLGLSIVKEITEKTGEKVWVESELGHGAA 578

Query: 804 IEII 807
             I 
Sbjct: 579 FYIS 582


>gi|237734078|ref|ZP_04564559.1| integral membrane sensor signal transduction histidine kinase
           [Mollicutes bacterium D7]
 gi|229382904|gb|EEO32995.1| integral membrane sensor signal transduction histidine kinase
           [Coprobacillus sp. D7]
          Length = 524

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 78/369 (21%), Positives = 167/369 (45%), Gaps = 35/369 (9%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           +K++ E +++  IL+   +G  +++ +  +L  NR   KL+G+ ++  L      F+   
Sbjct: 189 KKLKSEQIKINGILDQMKEGFVLLDSDLTVLMVNRKAQKLYGHTIK--LNCSIKDFIFDF 246

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564
                  +L++          E+  +   KE++  +  +           +L   +I+E 
Sbjct: 247 KIINALDHLSD----------EQQVVEVEKEKEFYNCYVAKV----DYGVTLLFVNITEQ 292

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
                               + +F + VSHE++TP+T+I G+SE+++             
Sbjct: 293 --------------HNAMKMRQEFFSNVSHELKTPMTSIRGYSELLETGVIN--DKDASK 336

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           +  + I    N +  ++ND+L IS++E+  +++   PV L   V E I  +Q+  ++K +
Sbjct: 337 KALDKIHDEVNNMSTLINDILMISRLENKDVDVIKHPVHLTPLVDEIIDTMQVEIDKKHL 396

Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744
            +     +      ++ + + Q+  N+++NAI +   GG+III  ++     +I+ V DT
Sbjct: 397 QVDKELED--ITYTSNHQHMHQLLSNLITNAIKYNVDGGKIIIK-SYQFGRNIIIEVSDT 453

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G G++  +  +  + F +    +     GTGLGL + K +V    G   + S   +GT  
Sbjct: 454 GRGISKIDQGRVFERFFRCDQGRDKETGGTGLGLAIVKHIVQYYQGNITLTSKLHEGTTF 513

Query: 805 EIIFPLYDT 813
           ++  P+ + 
Sbjct: 514 KVTLPMEEE 522


>gi|170695468|ref|ZP_02886613.1| multi-sensor signal transduction histidine kinase [Burkholderia
           graminis C4D1M]
 gi|170139659|gb|EDT07842.1| multi-sensor signal transduction histidine kinase [Burkholderia
           graminis C4D1M]
          Length = 437

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 79/412 (19%), Positives = 164/412 (39%), Gaps = 35/412 (8%)

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK-----RKMEIEVMQLCSILEATS 462
                   +      + P      G     +     +     R++E +  +    ++A+ 
Sbjct: 49  HKERLWRLLDAPVYGEVPSAPGIWGEIYYRLHKLAKRWHAQVRQVEQQHSRFIQAIQASP 108

Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522
           +G+A+++    I   N    + FG   +  LR+  T  + Q       +           
Sbjct: 109 NGVAMLDDHDQIEWCNAISEEHFGLDAKRDLRQHITHLVRQPDFVRYLN----------S 158

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES 582
              E++ +     EK  ++  +       +   +   DI+E ++                
Sbjct: 159 HQYEQMLIMRGMGEKRQNVLSVQVFPYGENRKLVLSQDITELERT--------------D 204

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
           + + DF+A VSHE++TPLT + GF E ++     PL       Y   +++  + +  IVN
Sbjct: 205 AMRRDFVANVSHELKTPLTVLSGFLETMRE---LPLSEAERARYLELMEQQASRMRHIVN 261

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702
           DLL ++K+E        + + +   +       +  +++  I I       +  +     
Sbjct: 262 DLLVLAKLEGDNKPPSDQMIDMRAVLRHLRDDAESLSSDHHI-ITFEADEGL-TVTGVET 319

Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
            +     N+++NAI +TP GG I +S   T     +  V D+G+G+   ++ +  + F +
Sbjct: 320 ELLSAFGNLVTNAIRYTPDGGAIRVSWQ-TQGGAAVFSVTDSGLGIPAADIPRLTERFYR 378

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           +  S+     GTGLGL + K ++  +  +  + S   +G+   + FPLY T+
Sbjct: 379 VDRSRSRDTGGTGLGLAIVKHVLQRHDAQLDVKSEEGRGSTFSVKFPLYRTT 430


>gi|167756094|ref|ZP_02428221.1| hypothetical protein CLORAM_01614 [Clostridium ramosum DSM 1402]
 gi|167704086|gb|EDS18665.1| hypothetical protein CLORAM_01614 [Clostridium ramosum DSM 1402]
          Length = 565

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 78/369 (21%), Positives = 167/369 (45%), Gaps = 35/369 (9%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           +K++ E +++  IL+   +G  +++ +  +L  NR   KL+G+ ++  L      F+   
Sbjct: 230 KKLKSEQIKINGILDQMKEGFVLLDSDLTVLMVNRKAQKLYGHTIK--LNCSIKDFIFDF 287

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564
                  +L++          E+  +   KE++  +  +           +L   +I+E 
Sbjct: 288 KIINALDHLSD----------EQQVVEVEKEKEFYNCYVAKV----DYGVTLLFVNITEQ 333

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
                               + +F + VSHE++TP+T+I G+SE+++             
Sbjct: 334 --------------HNAMKMRQEFFSNVSHELKTPMTSIRGYSELLETGVIN--DKDASK 377

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           +  + I    N +  ++ND+L IS++E+  +++   PV L   V E I  +Q+  ++K +
Sbjct: 378 KALDKIHDEVNNMSTLINDILMISRLENKDVDVIKHPVHLTPLVDEIIDTMQVEIDKKHL 437

Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744
            +     +      ++ + + Q+  N+++NAI +   GG+III  ++     +I+ V DT
Sbjct: 438 QVDKELED--ITYTSNHQHMHQLLSNLITNAIKYNVDGGKIIIK-SYQFGRNIIIEVSDT 494

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G G++  +  +  + F +    +     GTGLGL + K +V    G   + S   +GT  
Sbjct: 495 GRGISKIDQGRVFERFFRCDQGRDKETGGTGLGLAIVKHIVQYYQGNITLTSKLHEGTTF 554

Query: 805 EIIFPLYDT 813
           ++  P+ + 
Sbjct: 555 KVTLPMEEE 563


>gi|156740179|ref|YP_001430308.1| multi-sensor signal transduction histidine kinase [Roseiflexus
            castenholzii DSM 13941]
 gi|156231507|gb|ABU56290.1| multi-sensor signal transduction histidine kinase [Roseiflexus
            castenholzii DSM 13941]
          Length = 1014

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 99/588 (16%), Positives = 209/588 (35%), Gaps = 48/588 (8%)

Query: 244  TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303
              +      +L+      + + E++   Q+    +        +    L+ N +      
Sbjct: 454  RPFTLEDQQLLEALADYAVIALENARQFQKIDQALARRAQELARTNEQLEQNLRSLTALN 513

Query: 304  SHRNHPSLSAYFDEG-----ENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVD 358
            +     + +                E          +     +       L +      +
Sbjct: 514  AFGMAINTTLRSPHEILSMTARGIAEMTGALGAMVLLPEDQGVRSVVSIGLRIAM---DE 570

Query: 359  DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
             +  A      +  P+    +   P+   R     +   A   T+               
Sbjct: 571  RLLKAVHHVMTIGRPETLAPDPDAPMRSPRCTIFIVPLRATQRTL----GCVCVAYANAP 626

Query: 419  EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
             + +     +         +++      +     Q+ SIL +T +GI +I+ +G +   N
Sbjct: 627  PEPSDQETVVLFASQAAVAIESIDLFVAVRTARDQMASILASTREGILLISADGTVAIAN 686

Query: 479  RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH-----YLTEILSL---DLRQTLEKITL 530
             A+S+L           P   FL +   S          L   +        Q +     
Sbjct: 687  AALSELTALDAGRFQGMPIDAFLARWFESAAYATEECAALQRAIDDALSGAAQFIAGELS 746

Query: 531  GSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
            GS    + L L   + +   S        L + DI+               A +    + 
Sbjct: 747  GSA--GRFLYLEWSVLRAQSSGDSHGGVLLVVRDIT--------------AAREADRMRQ 790

Query: 587  DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
            D +  + H++R+PL++++   E++     G L + + +      + S   +L+++N LLD
Sbjct: 791  DLMHMIVHDLRSPLSSVMASLELMMRGVPGALSD-QQLHVLQIANTSATSMLEMINTLLD 849

Query: 647  ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706
            IS++E+G+M +      +   + +A+  +   A ++ I +     ++IP I AD+  V +
Sbjct: 850  ISRLEAGRMPIERCRGDIRSIIVDAVRRLSSLALDRAISVEIGVDSDIPHIYADVGLVGR 909

Query: 707  IALNILSNAIHFTPSGGQIIISTTHTSNE---EVILRVRDTGVGMTNYELEKAMKPFGQI 763
            +  N++SNAI F+  GG + +       +   +V++ V D GVG+   + E+    F Q+
Sbjct: 910  VLQNLVSNAIKFSNRGGLVRVQAAVRPEDGQEKVLVTVSDQGVGIAPGDRERIFAKFSQV 969

Query: 764  PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
                  R  GTGLGL   K  ++A+  + ++ S   +G+      PL 
Sbjct: 970  ----GERRGGTGLGLAFCKQAIEAHGERIWVESELGRGSTFFFTLPLA 1013


>gi|148653889|ref|YP_001280982.1| histidine kinase [Psychrobacter sp. PRwf-1]
 gi|148572973|gb|ABQ95032.1| histidine kinase [Psychrobacter sp. PRwf-1]
          Length = 555

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 76/357 (21%), Positives = 153/357 (42%), Gaps = 32/357 (8%)

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
           ++ S L A  D + +++++  +   N+A   L     +D  R    +       +     
Sbjct: 194 KIRSSLLALQDAVILLDKDDSLEWWNQAAETLLALRSQDQGRSILDLIDAPEFKAYYVDA 253

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572
           ++    L +R   +          + L   +      F +   L ++D++     +    
Sbjct: 254 VSPNDGLRMRSWRDYE--------RFLQCEVT----HFGTEKLLIIYDVTRLHHLE---- 297

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
                       + DF+  VSHE+RTPLT I+G+ E   +Q   P  +P++    + + +
Sbjct: 298 ----------QMRKDFVGNVSHELRTPLTVIMGYIETFSDQ---PDLDPKWRRGFSLMTQ 344

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
               +  I+NDLL +S++E+ + ++  E V + + ++      Q Y  +   LI     +
Sbjct: 345 QTVRMNQIINDLLLLSRLENEE-SIQSERVDMPKLLTRIFDDAQAYNKDYNHLIDLHLDS 403

Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752
               I      +    LN+++NAI +TP GG++ I+        +   V D G+G+ +  
Sbjct: 404 QQ-DIYGAEGYLHSALLNLVTNAIKYTPKGGEVRITWQEVKEGCL-FTVSDNGIGIADEH 461

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           L++  + F ++   +     GTGLGL + K ++  +  K  I S   KG+   ++FP
Sbjct: 462 LDRLTERFYRVDGGRSRSTGGTGLGLAIVKHVLYQHEAKLTIESVEGKGSKFHVLFP 518


>gi|54298075|ref|YP_124444.1| hypothetical protein lpp2132 [Legionella pneumophila str. Paris]
 gi|53751860|emb|CAH13284.1| hypothetical protein lpp2132 [Legionella pneumophila str. Paris]
          Length = 827

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 86/370 (23%), Positives = 166/370 (44%), Gaps = 17/370 (4%)

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRKPFTVFLEQNTPSVMN 510
             + +I+      +  +N+  + +  +  + KL       DI+ K +     + + S   
Sbjct: 152 RYMENIIAQIPVSVYWMNKNHVYMGCSNNMVKLLNLNSRYDIVGKTYEDLYHEKSTSYYK 211

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQ 566
                ++   +  +LE+         K   L      L               DI++ K+
Sbjct: 212 KADKIVMDKGIPLSLEEPFYCPDGTTKETYLS-NKVPLRDLEGKIIGMLGVSVDITDRKK 270

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
            + +LS AK+ AE+ ++ K++F+A +SH++RTPL+ ++G +E++K Q    + +P  ++Y
Sbjct: 271 MELELSKAKEAAEEANNVKTEFIANMSHDLRTPLSGVVGMAELMKEQ----VTDPVQVQY 326

Query: 627 ANYIDRSGNLVLDIVNDLLDI-SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           A +I      +L +++ +LDI S     +  L      ++E ++E + L       K++ 
Sbjct: 327 AEWIFDCSQQLLSLLDGILDIVSLGNVKEDELKITTFDINECIAELVHLEMPSIKLKQLD 386

Query: 686 IRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH----TSNEEVILR 740
           +  +    IPR I  D   + +I LN+L NAI FT SG  I I          +  +   
Sbjct: 387 LIVNIDKKIPRLIKTDRIKLHRIILNLLGNAIKFTDSG-YIAIDVKLLELNNESGLIYFA 445

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           + DTG+G+   +  K    F +I  S   + +G G+GL + ++ V+   G+  + S P  
Sbjct: 446 ISDTGIGIPENQQTKIFDRFHRIIPSSIGKYKGHGVGLHIVQSYVNLLGGEIQVNSEPGV 505

Query: 801 GTLIEIIFPL 810
           GT      P+
Sbjct: 506 GTTFYFELPI 515


>gi|90578034|ref|ZP_01233845.1| probable composite two component regulatory protein [Vibrio
           angustum S14]
 gi|90441120|gb|EAS66300.1| probable composite two component regulatory protein [Vibrio
           angustum S14]
          Length = 1311

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 90/392 (22%), Positives = 179/392 (45%), Gaps = 29/392 (7%)

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI------INREGI-ILSTNRAVSKLF 485
           +  E    +  ++K+        + L    DG+ I       +   I  L  +  ++   
Sbjct: 526 LSREITQRKNAEQKL--------TYLTNNFDGVLIQHLQKSHDPYDIEFLFISEKINHFI 577

Query: 486 GYPVEDILRKP---FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
            Y    I + P   F +  +++  + +   + + +S+    T       +T + + + LR
Sbjct: 578 DYEASMIYKNPSLLFNILKQRDDFTSLYLAMQQAVSVGYWST-NLQIHSNTLKPRWIELR 636

Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
             I ++     ++  + DI++ K+++  L  A + +   +  KS FLA +SHEIRTP++ 
Sbjct: 637 CQISEVENGWQWNTIILDITQTKEQQVALMEANEKSLAATESKSRFLAMMSHEIRTPISG 696

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           I+   E+++      +      +  + + +SG  +L+IVND+LD SKIE+GK++++    
Sbjct: 697 ILSLLELME----PHVKTTELRQIHHNLSQSGRNLLNIVNDVLDFSKIEAGKLSINPSEN 752

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPS 721
           ++ + + E +    ++A +K I         I   +L D   + QI  N+++NAI FT  
Sbjct: 753 NISDLIHELVQPHSIHAQQKEITFTLWLDPAIAHCLLFDEVRLTQILNNLINNAIKFTVQ 812

Query: 722 GGQIIIST----THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
           G  I ++        S + +   + DTG+G+   +L++  +PF Q+  +   R  GTGLG
Sbjct: 813 G-NIHLAVDMIQESASQQRLTFSIIDTGIGIKPEDLQRLFQPFVQVEQNSNRRFSGTGLG 871

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           L +   +     G+    S    GT   +  P
Sbjct: 872 LSICHQLAQLMGGEIVAKSDINIGTTFSVTIP 903


>gi|255009881|ref|ZP_05282007.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
 gi|313147668|ref|ZP_07809861.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
 gi|313136435|gb|EFR53795.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
          Length = 409

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 91/375 (24%), Positives = 164/375 (43%), Gaps = 31/375 (8%)

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF-------------LE 502
           +IL + +    +++R+ ++L TN     L G P E +  +   +                
Sbjct: 44  TILHSMNACFMLVDRDFVVLRTN--YYDLNGIPGEPVSNRVGDLLKCKNAVRSEGCGAHH 101

Query: 503 QNTPSVMNHYLTEILSLDLR-QTLEKITLGSTKEEKL-----LSLRIIIKKLPFSSCYSL 556
                ++ + +            LE      + + +      +S+              L
Sbjct: 102 NCGSCMVRYTIENAFCHKKGFSKLEASMRLFSPDHQHIIPCDVSVSGTYLTDGDQEQMLL 161

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
           T++DI+E K  +  LS  K+ A      KS F+A +SHEIRTPL AIIGFS ++ +    
Sbjct: 162 TIYDITELKNTQRLLSIEKENAVSAEKLKSAFIANMSHEIRTPLNAIIGFSGLLASTD-- 219

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
              +     Y + +  + + +L IV D+LD+SKIESG ++ H+    +++ +     +++
Sbjct: 220 --DDAEKKMYLDIVAENNHRLLQIVTDVLDLSKIESGSLDFHYSRFDVNDLLCGLHGILE 277

Query: 677 LYANEK-RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
           +   +K  I +      +   I ++ + + QI  N++ NAI FT   G+I          
Sbjct: 278 IRLKDKPDIKLVCEAGTDEWMIYSEQQRIVQILTNLVHNAIKFT-QNGEIRFGCRPHGET 336

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
           +V   V DTG+G+   E +K    F ++         GTGLGL L++ +V +  G+  + 
Sbjct: 337 DVYFYVSDTGIGIPVGEQDKIFDRFTKLD----HEVPGTGLGLTLSQTIVQSLGGEIGVE 392

Query: 796 STPAKGTLIEIIFPL 810
           S   KG+      PL
Sbjct: 393 SEVTKGSTFWFTLPL 407


>gi|254226752|ref|ZP_04920327.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae V51]
 gi|125620729|gb|EAZ49088.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae V51]
          Length = 1146

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 89/382 (23%), Positives = 159/382 (41%), Gaps = 24/382 (6%)

Query: 441 RINKRKMEIEVMQLC---SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP- 496
           R +++  ++   QL     +L+A    I I + +  ++ TN A  K++    E    +P 
Sbjct: 481 RSSEQVAKLSTEQLRWLTELLDAIPSMIFISDEKDEVVLTNAAYRKIYHTCCEKGCVQPQ 540

Query: 497 --FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554
              +     +        + +    +         +             I   +     Y
Sbjct: 541 PECSFLALPDQHEAEFSIIIQAPKSNCSIGEHYFHVTRRA---------ISHPINQRKYY 591

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
               +DI+E K+ +  L  + + A +    ++ FLA VSHE+RTP+ A++G  E++ ++ 
Sbjct: 592 LTLFNDITELKETEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGLMEILASR- 650

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
              L +            S   +   VND+LD SKIE+ ++ L     +L + +   +  
Sbjct: 651 ---LKSSESQLLLTNAISSAERLKLHVNDILDFSKIEAQQLQLDIGLYNLADELGPLLRG 707

Query: 675 VQLYANEKRILIRTSFANN-IPRILADLRSVKQIALNILSNAIHFTPSGGQI-IISTTHT 732
            +  A  K I     ++ N +     D     QI  N+LSNAI FT  G  +  I     
Sbjct: 708 FEASAQLKEIEFDVIWSPNSLLLANFDALRFNQIVTNLLSNAIKFTDQGRVVFKIDVAPE 767

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
               + + V DTG GMT  ++E    PF Q  ++   R  GTGLG+ +   +++   GK 
Sbjct: 768 ---MLTIVVEDTGCGMTQTQIESLFVPFAQADSTITRRFGGTGLGMSIVANLIELMNGKI 824

Query: 793 YIFSTPAKGTLIEIIFPLYDTS 814
            + S   +GT I++  PL   +
Sbjct: 825 EVKSEFEQGTQIQVNLPLVTQT 846


>gi|148259594|ref|YP_001233721.1| PAS/PAC sensor hybrid histidine kinase [Acidiphilium cryptum JF-5]
 gi|146401275|gb|ABQ29802.1| PAS/PAC sensor hybrid histidine kinase [Acidiphilium cryptum JF-5]
          Length = 632

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 89/525 (16%), Positives = 191/525 (36%), Gaps = 52/525 (9%)

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
           +      +       + +   I       G +   +     L  Y++ + I       ++
Sbjct: 2   TPEPEAPDAPLAFARSFEAALIG--KSLDGIITSWSEGAENLFGYRADEIIGR-----SI 54

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
                      +  ++   +          +   +      + +        +     + 
Sbjct: 55  HVLAPPGREAEMDELLARTARGETFDQFETIR--RRKDGTLVRVLLTLNPVHDTEGCIVG 112

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
            + I  +  + R  +        +L SIL+   D I +I+  G + S ++A  ++FGY  
Sbjct: 113 ISKIARDITEHRSTEA-------RLRSILDTAPDAIVVIDPRGTVRSFSQAAERMFGYAA 165

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT--LEKITLGSTKEEKLLSLRIIIKK 547
           E+++ +  ++ + +   +  + YL   L    R+   + +       +     + + + +
Sbjct: 166 EEVVGRNVSMLMAEPHAAAHDGYLARYLETGERRIIGIGREVEARRADGSTFPIELAVGE 225

Query: 548 --LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
             LP +  ++  + D S+ K+ +N L+ A+K+              ++H+    L  I G
Sbjct: 226 VDLPETRLFTGFIRDASKRKRLENDLAQAQKM-----EAVGQLTGGLAHDFNNLLAVISG 280

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
             E++++   G        E       +     ++   LL   +    +  L    + ++
Sbjct: 281 NLEMLESHVAGG----EAAELLAEARLATERGAELAARLLAFGR----RQTLRPLAIDVN 332

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725
           E V +   L +       ++I T  A  +PR +AD   ++   LN+  NA    P GG++
Sbjct: 333 ELVGKMAPLFR-RTLGSPVMIETRLAAGLPRTMADPGQIETALLNLALNARDAMPKGGRL 391

Query: 726 IISTTH--------------TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           +I T                   + V+L V D+G+GM+     +A +PF          G
Sbjct: 392 VIETGLLHVDADYAAQQAETLPGDYVVLAVTDSGIGMSAETRGRAFEPFFTTKA----VG 447

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           EG+GLGL +    V  + G   I+S P  GT + +  P      P
Sbjct: 448 EGSGLGLSMVYGFVKQSGGHVQIYSEPGLGTTVRLFLPAIRAEMP 492



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/310 (10%), Positives = 83/310 (26%), Gaps = 16/310 (5%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTW-YGKTTLW 150
            G +   SE      G  A ++IG  +  ++        + +     R  T+   +T   
Sbjct: 28  DGIITSWSEGAENLFGYRADEIIGRSIHVLAPPGREAEMDELLARTARGETFDQFETIRR 87

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL---DKKFSHL 207
             +GT + V + L   P++       G     I           A  + +         +
Sbjct: 88  RKDGTLVRVLLTLN--PVHDTEGCIVGISK--IARDITEHRSTEARLRSILDTAPDAIVV 143

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
            + +    S  +    +F   +     R  + + +     AH   + +  +         
Sbjct: 144 IDPRGTVRSFSQAAERMFGYAAEEVVGRNVSMLMAEPHAAAHDGYLARYLETGERRIIG- 202

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
            +  + +    + + +  +   G +       F               D  +    E V 
Sbjct: 203 -IGREVEARRADGSTFPIELAVGEVDLPETRLFTGFIRDASKRKRLENDLAQAQKMEAVG 261

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
           +              + N   ++    + ++     G  + LL   +L+     +     
Sbjct: 262 QLTGGLAHD------FNNLLAVISGNLEMLESHVAGGEAAELLAEARLATERGAELAARL 315

Query: 388 RSDRTCIAAS 397
            +        
Sbjct: 316 LAFGRRQTLR 325



 Score = 54.3 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 49/444 (11%), Positives = 117/444 (26%), Gaps = 47/444 (10%)

Query: 43  NPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEEL 102
           NP HD+        +    ++     ++    + D  P  +     ID  G ++  S+  
Sbjct: 101 NPVHDTEGCIVGISKIARDITEHRSTEARLRSILDTAPDAIVV---IDPRGTVRSFSQAA 157

Query: 103 PKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWY----GKTTLWPIEGTNL 157
            +  G  A +++G  +  +    H    + ++   L+           +      +G+  
Sbjct: 158 ERMFGYAAEEVVGRNVSMLMAEPHAAAHDGYLARYLETGERRIIGIGREVEARRADGSTF 217

Query: 158 YVPIDLAALPI-YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSS 216
             PI+LA   +     R F+GF            +  +      D   +   E     + 
Sbjct: 218 --PIELAVGEVDLPETRLFTGFI----------RDASKRKRLENDLAQAQKMEAVGQLTG 265

Query: 217 VEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFH 276
                ++            +++ V+         +  L TE+   L +   +   ++   
Sbjct: 266 GLAHDFNNLLAVISGNLEMLESHVAGGEAAELLAEARLATERGAELAARLLAFGRRQTLR 325

Query: 277 TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV-------DKC 329
            + ++          L   +  S   +  R    L     +   +    +       D  
Sbjct: 326 PLAIDVNELVGKMAPLFRRTLGSPVMIETRLAAGLPRTMADPGQIETALLNLALNARDAM 385

Query: 330 PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389
           P    +     L + +  +          D  +     + +     +   A +P    ++
Sbjct: 386 PKGGRLVIETGLLHVDADYAAQQAETLPGDYVVLAVTDSGIGMSAETRGRAFEPFFTTKA 445

Query: 390 DRTCIAASARLHTIQWNRENSLAMTFI-------------------PFEKANQFPENMPQ 430
                     +      +       +                    P       P   P 
Sbjct: 446 VGEGSGLGLSMVYGFVKQSGGHVQIYSEPGLGTTVRLFLPAIRAEMPAADDEAAPSPPPG 505

Query: 431 NGIEPEDVDTRINKRKMEIEVMQL 454
             I     D    +R  E  + +L
Sbjct: 506 RAIVLVVEDDPAVRRVAERRLARL 529


>gi|269139357|ref|YP_003296058.1| sensory histidine kinase in two-component regulatory system with
           AtoC [Edwardsiella tarda EIB202]
 gi|267985018|gb|ACY84847.1| sensory histidine kinase in two-component regulatory system with
           AtoC [Edwardsiella tarda EIB202]
 gi|304559262|gb|ADM41926.1| Sensory histidine kinase AtoS [Edwardsiella tarda FL6-60]
          Length = 590

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 96/475 (20%), Positives = 198/475 (41%), Gaps = 30/475 (6%)

Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
            +   +   ++      + L              +M   +     +    +   +    N
Sbjct: 140 SMRPIRRDGEVTGYIWANELTQDIHRQARQMDLRIMAALAAGLLCSLLLIVLFSRRFSAN 199

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK--RKMEIEVMQLCSILEATSDGIAI 467
              +T      A++ P  +P+   E   +   IN   + +         I+E  +DG+  
Sbjct: 200 IDIITEGISTLAHKTPAPLPELPGELGQISRSINALAQTLRETKTLNDLIIENAADGVIA 259

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
           I+R G + + N A   + GY  ++++ +P+      +        + + L+      L +
Sbjct: 260 IDRLGAVTTINPAAEAITGYTRDELVGQPYAALFSDSH---FASPVLDTLAHGTAH-LAQ 315

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
                 +  + + + +   ++           +   D++  K+ + +L+  +++A     
Sbjct: 316 EVSFPAR-HRTIEISVTTSRIHNPHGELMGALVIFSDLTARKETQRRLAQTERLAT---- 370

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
              + +A V+HE+R PLTAI G+ ++I+ Q       P + EY + + +  + +  ++  
Sbjct: 371 -LGELMAGVAHEVRNPLTAIRGYVQIIRQQ----TTQPAHQEYLSVVLKEIDSINKVIQQ 425

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703
           LLD S+    +    ++ VSL+  + EA+ LVQ    + RI    +    +P I+AD   
Sbjct: 426 LLDFSRPRQSQ----WQQVSLNALIDEALILVQTSGVQARIAFHCALDRRLPAIVADREL 481

Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
           +KQ+ LNIL NA+    + G+I I T   +  +  + + D+G G+     +K   PF   
Sbjct: 482 LKQVLLNILINAVQAISARGEIRIRTWQPAPAQQAVAIEDSGCGIDIALQQKIFDPFFTT 541

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
             S      GTGLGL L++ +++A+ G   + STP  G+   +  P      P +
Sbjct: 542 KAS------GTGLGLALSQRIINAHRGDIDVVSTPGGGSTFTLTLPRNPPESPAE 590



 Score = 43.1 bits (100), Expect = 0.19,   Method: Composition-based stats.
 Identities = 20/241 (8%), Positives = 61/241 (25%), Gaps = 18/241 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G +  I+       G    +++G     +    H    + + D L        +  
Sbjct: 260 IDRLGAVTTINPAAEAITGYTRDELVGQPYAALFSDSHF--ASPVLDTLAHGTAHLAQEV 317

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
            +P     + + +  +   I++ + E  G     I        + +    + ++  +   
Sbjct: 318 SFPARHRTIEISVTTS--RIHNPHGELMGA--LVIFSDLTARKETQRRLAQTERLATL-- 371

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
                    E         ++P   +R   ++           + L      + +  +  
Sbjct: 372 --------GELMAGVAHEVRNPLTAIRGYVQIIRQQTTQPAHQEYLSVVLKEIDSINKVI 423

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
               +           ++     L + +    +    +   +     D          + 
Sbjct: 424 QQLLDFSR--PRQSQWQQVSLNALIDEALILVQTSGVQARIAFHCALDRRLPAIVADREL 481

Query: 329 C 329
            
Sbjct: 482 L 482


>gi|237653851|ref|YP_002890165.1| PAS/PAC sensor signal transduction histidine kinase [Thauera sp.
           MZ1T]
 gi|237625098|gb|ACR01788.1| PAS/PAC sensor signal transduction histidine kinase [Thauera sp.
           MZ1T]
          Length = 902

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 81/607 (13%), Positives = 186/607 (30%), Gaps = 29/607 (4%)

Query: 214 HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE 273
              ++                  ++        + H +DV +T       +    +  + 
Sbjct: 302 VIDLDGRFGRCNPAFERVLGHDPRSLPGCSLIDFVHPEDVSETLAMLRRLAGGEPVRFET 361

Query: 274 DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF 333
                + +          ++                +                D      
Sbjct: 362 RCRCADGSYKWLMWSINPVREERLVYAVAHDVTGRKATEDALRAESAFRKAMEDSVVTGL 421

Query: 334 -FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
             +   G + Y N +F  +  +   D++  AG         +L++      + L      
Sbjct: 422 RAIDLSGRIIYVNTAFCRMIGF-DEDELVGAGPPFPYWPPEQLAECERNLSMTLSGRAPR 480

Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
                  +  ++ N E      F      +             +  + +  +  +E    
Sbjct: 481 SG---FEMRILRKNGER-FDARFYLSPLIDLTGRQTGWMASITDITEPKRVRAALESAHE 536

Query: 453 QLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILRKPFTVF-LEQNTPSVMN 510
           +  ++L+     + + +     IL  N A  ++ G+   D + +      + Q       
Sbjct: 537 RFEAVLDGLDAAVFVADARTDEILFANLAFKRIHGF---DAVGRTVRGVAVPQPERGDYR 593

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY-SLTMHDISEWKQEKN 569
                +   D+ + L    L   +  +   +R    +             DI++ KQ   
Sbjct: 594 VDPRNLSPADVPRELFDGELLHPQSGRWYHVREQATRWVDGRVVRMGIATDITDRKQTAA 653

Query: 570 KLSHAKKIAEKESSH--KSDFLARVSHEIRTPLTAIIGF-SEVIKNQRFGPLGNPRYIEY 626
                ++  ++ S      +  + ++HE+  PL AI  + +  +   + G       +  
Sbjct: 654 VAREQEERLQRTSRLITMGEMASTLAHELNQPLAAIANYCAGSVTRLQSGKARTEDVLAA 713

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
                        I+  + +  K    K       V L E + +AI    + A+  RI I
Sbjct: 714 MQKASFQAERAGKIIRRVREFVK----KSEPQRCAVDLVEVLEDAIGFADIDAHRTRIRI 769

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFT----PSGGQIIISTTHTSNEEVILRVR 742
            T     +P + AD   ++Q+ LN++ N +       P    + +       + V + V 
Sbjct: 770 HTELEPGLPPVYADRIMIEQVLLNLIRNGLDAMADALPEARVLTVRVRTVGADAVEVAVI 829

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G G++     +   PF         + EG G+GL + +++V+ + G+  + + P  GT
Sbjct: 830 DRGHGISEEGRAQLFTPFYTT------KAEGMGMGLNICRSIVEFHNGRLLVDANPEGGT 883

Query: 803 LIEIIFP 809
           +     P
Sbjct: 884 IFTFTLP 890



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/279 (11%), Positives = 70/279 (25%), Gaps = 23/279 (8%)

Query: 68  LDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI 127
           L +E+ F        V     ID  G +  ++    + IG    +++G            
Sbjct: 403 LRAESAFRKAMEDSVVTGLRAIDLSGRIIYVNTAFCRMIGFDEDELVG-----AGPPFPY 457

Query: 128 DPNNHIGD-------LLKRQNTWYG-KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFR 179
            P   + +        L  +    G +  +    G        L+  P+       +G+ 
Sbjct: 458 WPPEQLAECERNLSMTLSGRAPRSGFEMRILRKNGERFDARFYLS--PLIDLTGRQTGWM 515

Query: 180 GFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL----- 234
               +         RA  +   ++F  + +       V   + D     +          
Sbjct: 516 --ASITDITEPKRVRAALESAHERFEAVLDGLDAAVFVADARTDEILFANLAFKRIHGFD 573

Query: 235 RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT-LQ 293
            +   V  +      + D     +          L + E  H  +   Y  ++     + 
Sbjct: 574 AVGRTVRGVAVPQPERGDYRVDPRNLSPADVPRELFDGELLHPQSGRWYHVREQATRWVD 633

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP 332
                        +    +A   E E     T     + 
Sbjct: 634 GRVVRMGIATDITDRKQTAAVAREQEERLQRTSRLITMG 672


>gi|258593669|emb|CBE70010.1| putative Histidine kinase [NC10 bacterium 'Dutch sediment']
          Length = 764

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 95/626 (15%), Positives = 210/626 (33%), Gaps = 51/626 (8%)

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
            +++   +   +    I   +SP   +  +N +  +     ++   L         S E+
Sbjct: 22  VDVQGVVTFANRALARIHGIESPEQLIG-RNFLEFIAPIDLNRVKELFVRAVETGASAET 80

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
              +       +     K          +                    E  +L    ++
Sbjct: 81  IETQIVRSDGASTFVEVKPVPILEDGRVAGLQGVLRDVTERKRSELALREAYDLLAAVMN 140

Query: 328 KCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
             P    +    GN+   + +   +  ++  + +         L     +     + ++ 
Sbjct: 141 ASPAGITILDRDGNVRLWSRAAERIFGWQKEEVLGRP------LPIVPPNKCEEYRNLLD 194

Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
                  +A    +   +    + + ++       N         G+  +    +  + +
Sbjct: 195 RALAGETLAGIDVVR--RKKDGSPIDISLWTAPLCNAGGGIDGVVGVLVDTTGRKQAEGR 252

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
           + ++   L +       GI I +R G+IL  N A ++L GY  E+ + +   +       
Sbjct: 253 LRLQAAALEAAAN----GIIITDRGGMILWVNSAFARLTGYTAEEAIGRNPRLLKSGQHD 308

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDIS 562
               H L E +     +  +   +   K+  L +    +  +         +     DI+
Sbjct: 309 QAFYHNLWETILAG--RVWQGEMVNRRKDGSLYTEDQTVTPVRDERGEITYFIAIKQDIT 366

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E ++ +++   A+K+              ++H+    L+ IIGF+E+       P  +  
Sbjct: 367 ERRRLEDRFRQAQKL-----EAVGLLAGGIAHDFNNHLSGIIGFAELALGGI--PPDSKE 419

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
           Y  + + + + G    D+V  +L  ++    K  L  +P+ LD  + E +S+++    E 
Sbjct: 420 YR-HLSRVPKIGRQAADLVGQVLSFAR----KAPLQRKPLDLDPLLQETMSVLRRTLPE- 473

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST------------- 729
            I I    A     + AD   V+QI LN+ +NA    P GG + +               
Sbjct: 474 TIAIELEPAREPLVVNADGAQVQQILLNLATNARDAMPYGGTLTLRLTPVTLIEASLGGY 533

Query: 730 -THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                     L + DTG G+     ++  +PF     +    G GTGLGL     +   +
Sbjct: 534 PERRLGAFACLTIADTGTGIPAAIRDRIFEPFFTTKEA----GHGTGLGLASVYGIAQQH 589

Query: 789 MGKFYIFSTPAKGTLIEIIFPLYDTS 814
            G   + +   +G+   +  PL   +
Sbjct: 590 EGWIEVETAEGQGSAFHVFLPLVLAA 615



 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 39/262 (14%), Positives = 99/262 (37%), Gaps = 14/262 (5%)

Query: 316 DEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
            EGE+     V++     F     G + +AN +   +   +S + +     L  +     
Sbjct: 2   REGEDRCCALVNEINDGLFAVDVQGVVTFANRALARIHGIESPEQLIGRNFLEFI----A 57

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
             D N +K + +   +    A +     ++ +  ++  +   P     +        G+ 
Sbjct: 58  PIDLNRVKELFVRAVETGASAETIETQIVRSDGASTF-VEVKPVPI-LEDGRVAGLQGVL 115

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
            +  + + ++  +      L +++ A+  GI I++R+G +   +RA  ++FG+  E++L 
Sbjct: 116 RDVTERKRSELALREAYDLLAAVMNASPAGITILDRDGNVRLWSRAAERIFGWQKEEVLG 175

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL----PF 550
           +P    +  N      + L   L+ +    ++   +   K+   + + +    L      
Sbjct: 176 RPL-PIVPPNKCEEYRNLLDRALAGETLAGID--VVRRKKDGSPIDISLWTAPLCNAGGG 232

Query: 551 SSCYSLTMHDISEWKQEKNKLS 572
                  + D +  KQ + +L 
Sbjct: 233 IDGVVGVLVDTTGRKQAEGRLR 254



 Score =  111 bits (277), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 29/378 (7%), Positives = 97/378 (25%), Gaps = 18/378 (4%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFK-MIGMRLCDVSDILHIDPNNHIG-DLLKRQNTW 143
            + +D  G +   +  L +  G  + + +IG    +    + ++    +    ++   + 
Sbjct: 19  LFAVDVQGVVTFANRALARIHGIESPEQLIGRNFLEFIAPIDLNRVKELFVRAVETGASA 78

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
               T   +        +++  +PI   +   +G +G  ++             +     
Sbjct: 79  ETIETQI-VRSDGASTFVEVKPVPIL-EDGRVAGLQG--VLRDVTERKRSELALREAYDL 134

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL---RMKNKVSSLTEYYAHKDDVLKTEKYP 260
            + +        ++     ++         +   + +  +                    
Sbjct: 135 LAAVMNASPAGITILDRDGNVRLWSRAAERIFGWQKEEVLGRPLPIVPPNKCEEYRNLLD 194

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
              + E+           + +      +   L N        +      +     +    
Sbjct: 195 RALAGETLAGIDVVRRKKDGSPIDISLWTAPLCNAGGGIDGVVGVLVDTTGRKQAEGRLR 254

Query: 321 LTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
           L    ++       +    G + + N +F  LT Y + + I    G +  L      D  
Sbjct: 255 LQAAALEAAANGIIITDRGGMILWVNSAFARLTGYTAEEAI----GRNPRLLKSGQHDQA 310

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
               +                   +    +            ++  E      I+ +  +
Sbjct: 311 FYHNLWETILAGRVWQGEMVN---RRKDGSLYTEDQTVTPVRDERGEITYFIAIKQDITE 367

Query: 440 TRINKRKMEIEVMQLCSI 457
            R  + +   +  +L ++
Sbjct: 368 RRRLEDRFR-QAQKLEAV 384



 Score = 68.5 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 27/250 (10%), Positives = 58/250 (23%), Gaps = 12/250 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147
            D  G +  ++    +  G  A + IG     +    H     +++ + +     W G+ 
Sbjct: 270 TDRGGMILWVNSAFARLTGYTAEEAIGRNPRLLKSGQHDQAFYHNLWETILAGRVWQGEM 329

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                +G+       +   P+     E + F    I              ++  K  +  
Sbjct: 330 VNRRKDGSLYTEDQTV--TPVRDERGEITYF--IAIKQDITERRRLEDRFRQAQKLEAVG 385

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
                           I             +           K      +    + S   
Sbjct: 386 LLAGGIAHDFNNHLSGIIGFAELALGGIPPDSKEYRHLSRVPKIGRQAADLVGQVLSFAR 445

Query: 268 SLPEQEDFHTINLNQY-----TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
             P Q     ++          ++    T+    + + E L      +         NL 
Sbjct: 446 KAPLQRKPLDLDPLLQETMSVLRRTLPETIAIELEPAREPLVVNADGAQ--VQQILLNLA 503

Query: 323 PETVDKCPIP 332
               D  P  
Sbjct: 504 TNARDAMPYG 513



 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/304 (8%), Positives = 75/304 (24%), Gaps = 20/304 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D  G ++  S    +  G    +++G  L  +      +   ++ D      T  G   
Sbjct: 149 LDRDGNVRLWSRAAERIFGWQKEEVLGRPLP-IVPPNKCEEYRNLLDRALAGETLAGIDV 207

Query: 149 LWP-IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
           +    +G+   + I L   P+ +           G++             +      +  
Sbjct: 208 VRRKKDGSP--IDISLWTAPLCNAGGGID--GVVGVLVDTTGRKQAEGRLR----LQAAA 259

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEKYPLLTS- 264
            E       +      I    S    L      +               +   + L  + 
Sbjct: 260 LEAAANGIIITDRGGMILWVNSAFARLTGYTAEEAIGRNPRLLKSGQHDQAFYHNLWETI 319

Query: 265 -EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
                   +      + + YT+ Q    +++   E   +++ +   +     ++      
Sbjct: 320 LAGRVWQGEMVNRRKDGSLYTEDQTVTPVRDERGEITYFIAIKQDITERRRLEDRFRQAQ 379

Query: 324 ETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
           +          + + G     N     +  +  +  +      S              + 
Sbjct: 380 KL-----EAVGLLAGGIAHDFNNHLSGIIGFAEL-ALGGIPPDSKEYRHLSRVPKIGRQA 433

Query: 384 VMLY 387
             L 
Sbjct: 434 ADLV 437


>gi|163801654|ref|ZP_02195552.1| Signal transduction histidine kinase [Vibrio sp. AND4]
 gi|159174571|gb|EDP59373.1| Signal transduction histidine kinase [Vibrio sp. AND4]
          Length = 1240

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 91/410 (22%), Positives = 165/410 (40%), Gaps = 17/410 (4%)

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469
             A+  +          ++  + +           +  + +   L S+L+   + I I +
Sbjct: 541 IWALFGVCILLVALLIYSLRTSQLTRTIKRKEYETQIRQKQSKWLSSVLDQLPNKILISD 600

Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
                +  N+    +      D         + +     + +   E  S+        + 
Sbjct: 601 GNNKQILANKPFINMLSRSNAD-------SGITEEEREKILNLTRECSSVGSEFAETSLF 653

Query: 530 LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
               K  ++    +       +        D+SE KQ++  L  +   A +    +  FL
Sbjct: 654 SFGNKHYRVRKQTLH-HPEEETQYCMTVFDDVSELKQKETALKVSNLKAMQAIEAREHFL 712

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
           A VSHE+RTP+ A++G  E+++      L   +  E      +S   +   VND+LD SK
Sbjct: 713 AVVSHELRTPIAAMLGLMELLEQD----LEQIKSRELLKNAMQSAERLQLHVNDILDFSK 768

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIA 708
           I + ++ L  +  ++ + +   +   +    +K +    S+       +  D   V QI 
Sbjct: 769 INANQLQLDVQKGNVYQELGSTLRSFEKAIEQKSLSFELSWTPTPHAMVELDWLRVNQII 828

Query: 709 LNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
            N+LSNA+ FT  G +II++     N ++ L V+DTG GM   +L    +PF Q   S  
Sbjct: 829 NNLLSNAVKFTERG-KIIVNVHVGPN-QLELGVQDTGCGMNTAQLATLFQPFVQGDKSIS 886

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
            R  GTGLG+ + K++VD   G   + S   +GT I I  P+   S P D
Sbjct: 887 RRFGGTGLGMSIVKSLVDIMDGSIEVESQKTRGTTITITLPM--VSQPLD 934


>gi|307720307|ref|YP_003891447.1| multi-sensor hybrid histidine kinase [Sulfurimonas autotrophica DSM
           16294]
 gi|306978400|gb|ADN08435.1| multi-sensor hybrid histidine kinase [Sulfurimonas autotrophica DSM
           16294]
          Length = 1033

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 94/430 (21%), Positives = 183/430 (42%), Gaps = 26/430 (6%)

Query: 392 TCIAASARLHTIQWNRENS--LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449
                +  +  ++     +    +      + +   ++   N IE    + +  ++    
Sbjct: 352 RLFNVTTTILFLREKGTQTVKHGVNEKRKIRNSSKTDSALFNLIEYVTTELKEQEKIFRA 411

Query: 450 EVMQLCSILEATSDGIAI--INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
              +L   L+A    + I   +  G I   N    ++ GY  E+++ K   +  + + P 
Sbjct: 412 SKFKLDEFLKALDSVVIISRTDMLGNITYVNERFEEVSGYTKEELIGKSHNIVRDPDVPD 471

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISE 563
            +   L + ++       +       K+     ++  I  +   +     Y     D++ 
Sbjct: 472 EVFTELWKEITKGN--IWQGEFSNIAKDGSSYYVKSSIIPIHDENNEIIEYMAIREDVT- 528

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
                  L  ++K AE+  + ++ FLA +SHEIRTP+  I+GF+E++   +         
Sbjct: 529 ------SLVQSRKKAEEAEAAQAMFLANMSHEIRTPMNGILGFTELLSKTQLDTA----Q 578

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            +Y N I+ S   +LDIVND+LD SKI + K++L   P++     +    L++  A EK 
Sbjct: 579 EKYVNVINSSTKTLLDIVNDILDSSKITNNKISLEKIPLNPFVEFATTYELLKSVAEEKA 638

Query: 684 ILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII--ISTTHTSNEE--VI 738
           +       N I   I +D   ++Q+ +N+LSNAI FTP  G +   IS          + 
Sbjct: 639 LNYTLEIDNAISTCIYSDATRLRQVIINLLSNAIKFTPEYGDVRFCISLLQQKENRQIMH 698

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
             + D+G+G+   +L++  KPF Q   S   +  GTGLGL ++  ++     + ++ S  
Sbjct: 699 FSIEDSGIGIAKEKLQEIFKPFAQAETSTTRKFGGTGLGLSISADLLQVFGSELHVSSVK 758

Query: 799 AKGTLIEIIF 808
            +G+      
Sbjct: 759 NEGSCFFFDL 768



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 37/92 (40%), Gaps = 3/92 (3%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGK 146
             D  G +  ++E   +  G    ++IG     V D    D     +   + + N W G+
Sbjct: 431 RTDMLGNITYVNERFEEVSGYTKEELIGKSHNIVRDPDVPDEVFTELWKEITKGNIWQGE 490

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGF 178
            +    +G++ Y  +  + +PI+  N E   +
Sbjct: 491 FSNIAKDGSSYY--VKSSIIPIHDENNEIIEY 520


>gi|227889701|ref|ZP_04007506.1| phosphate regulon sensor histidine kinase [Lactobacillus johnsonii
           ATCC 33200]
 gi|227849746|gb|EEJ59832.1| phosphate regulon sensor histidine kinase [Lactobacillus johnsonii
           ATCC 33200]
          Length = 552

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 80/366 (21%), Positives = 160/366 (43%), Gaps = 40/366 (10%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            ++     +L ++ +A  +G+ +I+ +  IL +N AV  L G    D L       +++N
Sbjct: 215 EQLHHREKELKTVTDAMQEGLILIDLDDRILLSNPAVVSLLGLHDTDPLPDDVKEIIDKN 274

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISE 563
           +       +                    +  + + +              S+ + D++E
Sbjct: 275 SRLAHTEGI------------------VERNGRNIQISASPITSRKILKGTSILVVDVTE 316

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
              E+                + +F A VSHE++TPL +I+G +E+++N     + +   
Sbjct: 317 EYHEEQV--------------RREFTANVSHELKTPLQSIMGSAELLENHL---VKDEDR 359

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
             +   I  S   +L +++D++ +S ++  +       ++L   V+EA+  +Q  A+   
Sbjct: 360 DGFYKKIHESSAQLLTLIDDIIRLSHLDENQ-RFEEIKLNLKSPVTEALEALQGSADRHG 418

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
           I + T+ ++    ILA+ R V +IA N++ N+I +    G+  I+       + IL+V D
Sbjct: 419 IKLETNLSDT--MILANFRLVYEIAYNLIDNSIRYNKEKGKTKITVK-EHRSQAILQVAD 475

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TG+G+      +  + F ++  S   +  GTGLGL + K  V    G   + S   KG+ 
Sbjct: 476 TGIGIPQEAQNRIFERFYRVDKSHSRKTGGTGLGLSIVKHAVQQCHGTIRLESELGKGST 535

Query: 804 IEIIFP 809
             +IFP
Sbjct: 536 FTVIFP 541


>gi|82523852|emb|CAI78595.1| signal transduction histidine kinase [uncultured candidate division
           OP8 bacterium]
          Length = 350

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 101/240 (42%), Positives = 149/240 (62%)

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
           + I    S  KS+ +A +SHE+RTPL AI+GFS  IK + FGP+G+ +Y EY + I  SG
Sbjct: 104 RDILLSASRAKSEVIANMSHELRTPLNAILGFSSAIKCETFGPMGHTKYREYIDDISHSG 163

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
           + +LD++ND+LD+S IE+GKM LH + +++     EA  +V+  A E ++++    A N+
Sbjct: 164 SHLLDLINDILDVSAIEAGKMTLHEDSINVATIAKEAFHVVECLAVENQVMLAYDIAENL 223

Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELE 754
           P +  D R  KQI LN+ SNAI FTP GG + +           L V DTG+GM+  EL+
Sbjct: 224 PPLFVDERRFKQIVLNLASNAIKFTPPGGSVTLGLRLDDQGRHTLSVTDTGIGMSADELK 283

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
            A+ PFGQ+ +    R +GTGLGLPL K +V+ + G   I ST   GT++ ++FP   T+
Sbjct: 284 NALTPFGQLNSHLARRHDGTGLGLPLTKGLVELHDGTLDITSTKGTGTIVTVVFPATRTT 343


>gi|67525289|ref|XP_660706.1| hypothetical protein AN3102.2 [Aspergillus nidulans FGSC A4]
 gi|40744497|gb|EAA63673.1| hypothetical protein AN3102.2 [Aspergillus nidulans FGSC A4]
 gi|259485950|tpe|CBF83405.1| TPA: sensor histidine kinase/response regulator, putative
            (AFU_orthologue; AFUA_3G12550) [Aspergillus nidulans FGSC
            A4]
          Length = 2312

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 76/273 (27%), Positives = 131/273 (47%), Gaps = 13/273 (4%)

Query: 544  IIKKLPFSSCYSLTMHDISEW-KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
                +           D  +  K  + +  H  K+ E  +  KS FLA +SH++RTP+  
Sbjct: 1816 NASMVESQKRALTQARDAEQKAKVAEAEAKHNVKLKEDAAKAKSIFLANISHDLRTPMNG 1875

Query: 603  IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
            +IG SE++K  +     +    EY   I    + +L ++ND+LD SK+E+GKM +   P+
Sbjct: 1876 VIGLSELLKGTKL----DREQDEYVESIRVCADTLLTLINDILDFSKLEAGKMKISTVPL 1931

Query: 663  SLDEAVSEAISLVQLYANEKRILIRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTP 720
            ++ E +SE +  ++    ++ +          P   +L D   + QI +N+LSN+  FTP
Sbjct: 1932 NIKETISEVVRALRYTHRDRGLETIEDLDEVPPDLVVLGDPVRLHQIFMNLLSNSYKFTP 1991

Query: 721  SGGQIIIS--TTHTSNEEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
             G  + +S   T      V L   V DTG+G+ + +  +  +PF Q  +S      G+GL
Sbjct: 1992 KGS-VTVSAKVTREGKGRVRLECSVSDTGIGIPDEQKPRLFRPFSQADSSTARSYGGSGL 2050

Query: 777  GLPLAKAMVDA-NMGKFYIFSTPAKGTLIEIIF 808
            GL + KA+++    G  ++ S P  GT +    
Sbjct: 2051 GLSICKAIIEDVLGGAIWLDSVPGAGTTVTFHL 2083


>gi|307721710|ref|YP_003892850.1| integral membrane sensor hybrid histidine kinase [Sulfurimonas
           autotrophica DSM 16294]
 gi|306979803|gb|ADN09838.1| integral membrane sensor hybrid histidine kinase [Sulfurimonas
           autotrophica DSM 16294]
          Length = 1053

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 73/251 (29%), Positives = 127/251 (50%), Gaps = 10/251 (3%)

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            ++   +    K+ A++ S  KS FLA +SHEIRTPL  I+GF+E++K+           
Sbjct: 368 LEKIIEQTKQDKEAAQEASEAKSMFLANMSHEIRTPLNGIVGFTELLKDTGL----KEEQ 423

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            E+   I++S   +L+I+N++LD+SKIES K+ +     +  E    A+ +  + A+EK 
Sbjct: 424 QEFVEIIEKSSENLLEIINNILDLSKIESNKLEIEDVIFNPIEEFESAVDVYAVRASEKH 483

Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTT-----HTSNEEV 737
           I +       +   +  D   +K++ +N+LSNA+ FT S G I +              V
Sbjct: 484 IDLGCFIDPELEQPLKGDPTKIKEVVINLLSNAVKFTSSSGAINVDIRKLQSPQEGTTRV 543

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
              V+D+G+G+T+ +  +  + F Q   S   +  GTGLGL ++   ++   G+  + S 
Sbjct: 544 KFEVQDSGIGVTSEQKSRIFEAFSQADTSITRKYGGTGLGLTISARFIELMGGQLDLHSE 603

Query: 798 PAKGTLIEIIF 808
           P +GT      
Sbjct: 604 PGEGTTFFFTL 614


>gi|159905929|ref|YP_001549591.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus maripaludis C6]
 gi|159887422|gb|ABX02359.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus maripaludis C6]
          Length = 613

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 65/248 (26%), Positives = 138/248 (55%), Gaps = 4/248 (1%)

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            K++ N+L ++    ++    KS+ ++ VSHE+RTPLT+I G+ +++K++  G L N + 
Sbjct: 370 LKKDANELKNSYDELKEVDDLKSELISIVSHELRTPLTSIRGYIDLLKDETAGKL-NEKQ 428

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            E+ + I  +   +  I +++ D+  +++  +N   + +++  AV E +S +Q +A+ + 
Sbjct: 429 KEFVSVISENSERLKRITDNMSDLVTVDNEHLNTKLDKLNIKNAVEEIVSSLQHFADSRN 488

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
           I++     +    I  D   + Q+  N++ NA+ F+ +  ++ + T +  N  + L + D
Sbjct: 489 IILLEDVDD--LYIKGDKSKIHQVLANLIENAVKFSKTQTKVTV-TGYEDNGNIHLEITD 545

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
            G G+    L+K    F QI +S + +  G+GLGL + K +V+++ G  ++ S   KGT 
Sbjct: 546 QGPGIPKEYLDKVFDRFYQIDSSSKRKIGGSGLGLAVCKKIVESHGGSIWVESRIGKGTN 605

Query: 804 IEIIFPLY 811
           + ++FP+ 
Sbjct: 606 VHVLFPIA 613


>gi|119490790|ref|ZP_01623122.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
 gi|119453774|gb|EAW34932.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
          Length = 1111

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 78/273 (28%), Positives = 133/273 (48%), Gaps = 7/273 (2%)

Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEK-NKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
            + I +       +   + +++  Q     L +     ++ S  K +FLA  SHE+RTPL
Sbjct: 400 TVDINREDELGILAKIFNYMAQQLQTSFATLENQNIELKRLSQIKDEFLANTSHELRTPL 459

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
             IIG ++ + +   G L   +  E    I  SG  +L +VND+LD SK++   + L  +
Sbjct: 460 HGIIGLADSLIDGATGKLPT-KTTENLTMIANSGRRLLTLVNDILDFSKLKHNTIELQLK 518

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720
            + L E +   + L Q    +K I +  S  +++P + AD   ++QI  N++ NAI FT 
Sbjct: 519 SLGLWEVLDMVLVLSQSLVGQKNIKLINSVPDDLPGVEADENRLQQILYNLIGNAIKFTE 578

Query: 721 SGGQIIISTTH----TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
           SG  + I+        SN  + + + DTG+G++  +LE+    F Q   S   +  GTGL
Sbjct: 579 SG-TVEITACEKIIDESNHYIAVTISDTGIGISEDKLEQIFASFEQGDGSTARQYSGTGL 637

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GL + K +V+ + G   + S  A+G+      P
Sbjct: 638 GLAVTKQLVELHCGTIEVRSKVAEGSQFTFTLP 670


>gi|242373792|ref|ZP_04819366.1| histidine kinase [Staphylococcus epidermidis M23864:W1]
 gi|242348529|gb|EES40131.1| histidine kinase [Staphylococcus epidermidis M23864:W1]
          Length = 587

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 67/404 (16%), Positives = 160/404 (39%), Gaps = 39/404 (9%)

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
                +  ++  +          ++   I    +        S++ +  +G+  IN +  
Sbjct: 219 HISSVKTKDEIGDLSRAFNNMNYEIQEHIE--ALSSSKNIRDSLINSMVEGVLGINDQRD 276

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
           ++ +N+                     ++  +  ++   + +    +  +  E       
Sbjct: 277 VIISNKMA-------------DDIIHKIDDFSKELIEKQIEQTFKSEGTEFQEIEINTRY 323

Query: 534 KEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
                ++  I   +    +   + + D++                      K DF+A VS
Sbjct: 324 Y--VFITSYINRIQPNGRNGIVVIIRDMT--------------NEHNLDQMKKDFIANVS 367

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HE+RTP++ + G++E I +            +    +      +  +VN+LL+++++++ 
Sbjct: 368 HELRTPISLLQGYTESIVDGVVTE--PDEIRDSLAVVLDESKRLNRLVNELLNVARMDAE 425

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713
            +++  E   +D+ +++  +  ++ A +  + +  +  N+      D+  + Q+  N++ 
Sbjct: 426 GLSVEKEVQPIDDLLNKMKAKYRMQAEDLDLTMEFNSGNDNQLWDYDMDRMDQVLTNLID 485

Query: 714 NAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
           NA  +T  G  I ++T    N   IL + DTG G+    L++    F ++  S++   +G
Sbjct: 486 NASRYTQPGDTIAVTTA-KDNRYNILYISDTGTGIAPEHLQQVFDRFYKVDASRKRGKQG 544

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
           TGLGL + K +++ + GK  + S   KGT   I  P      PH
Sbjct: 545 TGLGLFICKMIIEEHGGKIEVESELGKGTTFIIKLP-----QPH 583


>gi|254523833|ref|ZP_05135888.1| periplasmic sensor hybrid histidine kinase [Stenotrophomonas sp.
           SKA14]
 gi|219721424|gb|EED39949.1| periplasmic sensor hybrid histidine kinase [Stenotrophomonas sp.
           SKA14]
          Length = 991

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 113/694 (16%), Positives = 224/694 (32%), Gaps = 47/694 (6%)

Query: 134 GDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193
           G  L  +    G+  L   EG      + L         +E + + G   ++      D 
Sbjct: 104 GAALAGRFHAQGEEVLVRAEGRTAVPWLVLGLKNNPLPEQELAAYLGMVDIYSA-YTADS 162

Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253
                       + +E +    +V     +    Q+     R                  
Sbjct: 163 ITSQNASGPLLVYAYEPQGRLLAVSNIGDEAQLLQTLGVATRQ------------QAFAR 210

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
           L  E+  +        P +E          ++          S      L+    P    
Sbjct: 211 LLHEEAQVRQVPPRPGPIREAAR--EGRLLSRYGINPFTGQPSLVGMVTLAEGTTPYFRR 268

Query: 314 YFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
              E        ++      + V +       +   L   +   +  +    G       
Sbjct: 269 VVFESIGTIKAQLEAREQGRYLVTTADRQVVLSTGGLTSREQSLLMTLPPGNGGRA---G 325

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ--WNRENSLAMTFIPFEKANQFPENMPQ 430
            +     +    ++             ++     W  +    +                 
Sbjct: 326 AQPLRRYSQGRFVVACRLPGVDWTLGHVYDWSDVWRSQGPYLLARALSALLIIGLLWWLL 385

Query: 431 NGIEPEDVDTRINKRKMEIEVMQL-CSILEATSDGIAIINR-EGIILSTNRAVSKLFGYP 488
             I+       +       E   L   I+     G+A+++R  G  L  N    +L    
Sbjct: 386 QRIDRRVFTPALADASRVYESEALSRVIIGTAPIGLALLSRSNGEPLLQNDTARQLVETV 445

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            E            +      N  + E+L L             +     L + +     
Sbjct: 446 HEAGEDATLPPLYARLAELGRNASIDEVLELQWSP-------AESGTATQLQISMAQATY 498

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKI-------AEKESSHKSDFLARVSHEIRTPLT 601
                +   + D++   + ++ L  A++        AE  +  KS F+A +SHEIRTPL 
Sbjct: 499 YEQPVWVCALRDVTAQVELEDNLRRAREDSEAARQSAEAANRAKSAFVATMSHEIRTPLN 558

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
            ++G  E++      P       E  + I  S + ++ I++D+LD SKIE+G++++   P
Sbjct: 559 GVLGHLELLARSPLQPG----QRERLDRIRFSADALMRIISDVLDFSKIEAGQLDVEPVP 614

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTP 720
            +L   +     L    A  K + +  +      +  + D   ++QI  N++ NA+ FT 
Sbjct: 615 FALRPLIEGVALLFAPDALRKGVRLYFTVDAAADQRCVGDAHRIRQILTNLVGNAVKFTE 674

Query: 721 SGGQIIISTTHT----SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
           SG +I++            ++ ++V D+G+GM+  +  +  +PF Q   S   R  G+GL
Sbjct: 675 SG-RILLRAELHRAAGQGAQLRVQVIDSGIGMSPEQTAQLFQPFQQADASVSRRYGGSGL 733

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           GL L   +  A  G+  + ST   G+   ++ P+
Sbjct: 734 GLALCLQIAQAMGGQVSVESTEGVGSSFTLLLPM 767


>gi|160941698|ref|ZP_02089025.1| hypothetical protein CLOBOL_06594 [Clostridium bolteae ATCC BAA-613]
 gi|158435195|gb|EDP12962.1| hypothetical protein CLOBOL_06594 [Clostridium bolteae ATCC BAA-613]
          Length = 1301

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 123/830 (14%), Positives = 267/830 (32%), Gaps = 112/830 (13%)

Query: 87   WN-IDAHGY-LKEISEELPKTIGNYAFKMIGMRLCD----VSDILHIDPNNHIGDLLKRQ 140
            W  +D      K  + E  + +G    +     +      +++  +    + + +L K  
Sbjct: 335  WKPLDRERVVFKNANRESIRILGYEPEEFWSHGVWQWKELIAEADYQMKLDQLDNLEKAG 394

Query: 141  NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
            ++   +  +   +GT+    I      +   + E      F  + + +         K L
Sbjct: 395  DSMNFQYRVRQKDGTS--CWILGKLEMVEDGDGELIAQSVFLDIDIRKRTEHQNQQLKEL 452

Query: 201  DKKFSHLHEIKKGHSSV------EKEKYDIFSQQSPPP---HLRMKNKVSSLTEYYAHKD 251
             +  S +  +   H+S+         +  +   ++        R  N   S  +      
Sbjct: 453  AEANSAILNMALEHTSLCEFYYYPDRRTCVIPDRTSARYQCGSRYVNMPDSFAQEMVVPG 512

Query: 252  DVLK--TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
                       + + + ++  +                 +G    N              
Sbjct: 513  GRRDFIRMYEDIHSGKRTASAQFLTVKDSWCRVTMSAVEYGENGQNGTVLGIIEDITKEQ 572

Query: 310  SLSAYFDEGE---------------NLTPETVDKCPIP----FFVYSHGNLFYANP---- 346
            +++   +E +                +  E + + P+       +    N    N     
Sbjct: 573  TMALALEEAKSKDLLTGLWNREAGTRIAQEYMAQKPLGERCALMLLDMDNFTRINQEEGV 632

Query: 347  SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD--------------------NNAIKPVML 386
            +F      +  D +        +       +                       ++ ++L
Sbjct: 633  AFANAVLQEVADILRAETEPDDIRVRMGGDEFMLVLKGRGKAGATVTGPRVAARVRELLL 692

Query: 387  YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV-DTRINKR 445
                   I+ S  +   +   E S                         +   +      
Sbjct: 693  QSDKDISISVSIGMCATEVVDEYSGLYRCAESTLKYVKENCQGNAACYLDTSNELGEMLT 752

Query: 446  KMEIEVMQLCSILEATS----DGI-AIINREGIILSTNRA----VSKL---FGYPVEDI- 492
             +  E  QL +I +  +    D +   ++  G   + N A     ++L   FG     + 
Sbjct: 753  DLYTEKHQLNTIEQGLTEQREDLVSFALDLLGKARNLNDAVQLLFARLGKTFGLDRVSLL 812

Query: 493  --------------LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
                            +  T  +   T  +      +         L +  +        
Sbjct: 813  DVDRDYLTCRFSYQWARDKTDLMMHKTFYITREQYEQWPGQFDPSGLNRHAVYDESSMSC 872

Query: 539  LSLRIIIKKLPFSSCYSLTMHD----ISEWKQEKNKL------SHAKKIAEKESSHKSDF 588
            L   I  + +           D      E ++   +L         K  A+  S  K+DF
Sbjct: 873  LQAAIWNQGMFAGILSFEVKTDGYSWNDEQRKLLEELSKIIPSFVMKARADAVSQAKTDF 932

Query: 589  LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
            L+R+SHEIRTPL AI+G + +    R       R +E  + ++ S   ++ ++ND+LD+S
Sbjct: 933  LSRMSHEIRTPLNAIVGMTSIA---RNVADDRDRVLECLDKLETSNQYLISLINDILDMS 989

Query: 649  KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS--FANNIPRILADLRSVKQ 706
            +IESGKM L+ +P+ +++ V     +++  A +K +           +  +  D   ++Q
Sbjct: 990  RIESGKMELNVQPMDMEDFVRSLEGMMRPQAEQKGLRFIVENRCCQGLALV-TDRLRLEQ 1048

Query: 707  IALNILSNAIHFTPSGGQIIISTTHTSN----EEVILRVRDTGVGMTNYELEKAMKPFGQ 762
            + +NI+ NA+ FT  GG +I S T        + +   V+DTG+G+ +  ++     F Q
Sbjct: 1049 VLINIIGNAVKFTGEGGDVIFSITPEEGSSGGQRLTFSVKDTGIGIASEAMDSIFNAFEQ 1108

Query: 763  IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL--IEIIFPL 810
               +  ++  GTGLGL ++  +V    G   + S   +G+     +  P+
Sbjct: 1109 AEKNTSVKYGGTGLGLAISSRLVQMMGGTLGVRSVLGEGSEFYFTLTLPI 1158



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/315 (10%), Positives = 90/315 (28%), Gaps = 30/315 (9%)

Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV--YSHGNLFY-ANPSFLLLT 352
            +  F  LS     S       G +         P       +  G   Y  N   L   
Sbjct: 158 EEGEFFPLSFAESVSEEYARRMGRSALELLGKTIPGGMLGTYFEPGFPLYYVNDRMLDCL 217

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
            Y   +  + + G+      P+  +       ++  +         R + I+      + 
Sbjct: 218 GYTYEEFSQDSQGMVGNCIHPQDRERVYG---VVRDAFGKVRDYGVR-YRIRKKNGRYIH 273

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM-------QLCSILEATSDGI 465
           +         +   ++    +  +       + +++ E         +   + ++   GI
Sbjct: 274 VYETGNFAQAEDGRDI-CLSVVRDISAEVEAEERLKQENREKERQAGRYDQLFQSVLCGI 332

Query: 466 AI---INREGIILS--TNRAVSKLFGYPVEDILRKPFTVF---LEQNTPSVMNHYLTEIL 517
                ++RE  ++    NR   ++ GY  E+        +   + +    +    L  + 
Sbjct: 333 MQWKPLDRE-RVVFKNANRESIRILGYEPEEFWSHGVWQWKELIAEADYQMKLDQLDNLE 391

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL---TMHDISEWKQEKNKLSHA 574
                  +        K+     +   ++ +       +      DI   K+ +++    
Sbjct: 392 KAGDS--MNFQYRVRQKDGTSCWILGKLEMVEDGDGELIAQSVFLDIDIRKRTEHQNQQL 449

Query: 575 KKIAEKESSHKSDFL 589
           K++A + +S   +  
Sbjct: 450 KELA-EANSAILNMA 463



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/352 (9%), Positives = 78/352 (22%), Gaps = 36/352 (10%)

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY------ANPSFLLLTKY 354
           +     N                 T+D           G   Y         +       
Sbjct: 27  QPRDAENTTRAFFKEYMVNRNVEATLDWLMDDVQWIGTGKGEYSCGKEQVLEALEQEFSL 86

Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
                  I   +      P  +       V+    D    A   R+ +          ++
Sbjct: 87  DPDAYQLIWEDIRENSLTPDCAVMQGRLTVVRILPDGENFAMGVRVTSTCVRTAEGFKVS 146

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI--INREG 472
            I       F E      +     ++   +    +    L  + +    G+         
Sbjct: 147 SIHASVPADFQEEGEFFPLSF--AESVSEEYARRMGRSALELLGKTIPGGMLGTYFEPGF 204

Query: 473 IILSTNRAVSKLFGYPVEDILRKP---FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
            +   N  +    GY  E+  +         +       +   + +       +      
Sbjct: 205 PLYYVNDRMLDCLGYTYEEFSQDSQGMVGNCIHPQDRERVYGVVRDAF--GKVRDYGVRY 262

Query: 530 LGSTKEEKLLSLRIIIKKLPFSSCY---SLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
               K  + + +                   + DIS   + + +L    +  E+++    
Sbjct: 263 RIRKKNGRYIHVYETGNFAQAEDGRDICLSVVRDISAEVEAEERLKQENREKERQAGRYD 322

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
                V       L  I+         ++ PL   R +      +R    +L
Sbjct: 323 QLFQSV-------LCGIM---------QWKPLDRERVV--FKNANRESIRIL 356


>gi|42780166|ref|NP_977413.1| sensor histidine kinase/response regulator [Bacillus cereus ATCC
           10987]
 gi|42736084|gb|AAS40021.1| sensor histidine kinase/response regulator [Bacillus cereus ATCC
           10987]
          Length = 896

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 79/338 (23%), Positives = 147/338 (43%), Gaps = 18/338 (5%)

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            +D +++            +    +  +L      T E        + +   L++  ++L
Sbjct: 395 HQDFIQQTVDNLGLTIHSIMGRMRIQTLLHESQAMTEELQVQSEELQTQAEELQMQAEEL 454

Query: 549 PFSSCYSLTMHDISEWKQEKN-----KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
             ++    +  + +E K         +L        + S +KS+FLA +SHE+RTPL +I
Sbjct: 455 RTTNEQLESRTEEAEQKTADLQITKLELEEKASELLRSSKYKSEFLANMSHELRTPLNSI 514

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +  SE++K      L +    E A  I  SG  +L ++ND+LD+SK+E+GK+++ FE  +
Sbjct: 515 LLLSEMLKENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIFEATN 573

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSG 722
           + +  +         A +K +      ++ IP +   D + ++QI  N+LSNA  FT  G
Sbjct: 574 ISDMAASMQQNFLHIAAQKNVEFTVEDSDTIPNLFYTDAKRIEQIIKNLLSNAFKFTEKG 633

Query: 723 GQ------IIISTTHTS-----NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
                   I  S           + + + V+DTG+G+   + +   + F Q   +   + 
Sbjct: 634 SVSLHFDSIETSNLSHDMQSISKDWISISVKDTGIGIAKEQHQLIFEAFQQADGATIRKY 693

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            GTGLGL + K       G   + S   +G+   +  P
Sbjct: 694 GGTGLGLSICKEFARLLGGWITLQSHVGEGSTFTVYIP 731


>gi|37526937|ref|NP_930281.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|36786370|emb|CAE15423.1| sensor protein (capsular synthesis regulator component C)
           [Photorhabdus luminescens subsp. laumondii TTO1]
          Length = 938

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 102/485 (21%), Positives = 189/485 (38%), Gaps = 34/485 (7%)

Query: 334 FVYSHGN---LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390
           F+        +   N S   +  Y + DD ++      L       D+N    ++  R  
Sbjct: 234 FIQRQDRPISITLLNSSNHPVLHYPANDDYKLHYADYQLEAPYFGYDDNFTDLLLKRRLM 293

Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV--DTRINKRKME 448
            +  +    L          L +       A      +    +    +      N  ++E
Sbjct: 294 PSSFSIIYALSLKTIFEGFKLQIISSIVLNALSAFVIIILVYLFERKMFVPAEENAIRLE 353

Query: 449 IEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
                   I+ +   GI+I+   +G  + +N            +   +   +  ++ +  
Sbjct: 354 EHEQFNHKIVASAPVGISILRVSDGSNILSNELAHNYLRMLTHEDRERIIHIICDRTSSY 413

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQE 567
                                    T     L +  +  +          + DIS   + 
Sbjct: 414 ---------------------VDVVTSNHHHLQISFVHSRYRNEEVAICVLVDISVRVRM 452

Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
           +  L      +E+ +  KS FLA VSHE+RTPL  IIG  E+++            +   
Sbjct: 453 EKSLQEMALASEQANYSKSMFLATVSHELRTPLYGIIGNLELLQAHSLPA----ESVRLL 508

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
           + ++ S  L+L I++D+LD SKIES ++ +     S  E +S  IS       +K + + 
Sbjct: 509 STMNNSSALLLKIISDILDFSKIESKQLKIESREFSCQEVISHVISNYLPLVVKKPLTLY 568

Query: 688 TSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
                 +P  +  D   ++Q+  N+L+NAI FT +G  +II  T    + + +R++DTGV
Sbjct: 569 CYIEPGVPDYICNDPVRLQQVISNLLNNAIKFTDTG-CVIIHVTV-DKDYLYVRIKDTGV 626

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+++  L +   PF QI  + +   +GTGLGL + + +++   G   + S P  G++  I
Sbjct: 627 GISDKALIQLFDPFFQIMPNTESSSQGTGLGLAICEKLINLMDGDIEVISQPQIGSMFSI 686

Query: 807 IFPLY 811
             PLY
Sbjct: 687 RLPLY 691


>gi|149276715|ref|ZP_01882858.1| two-component regulatory system histidine kinase [Pedobacter sp.
           BAL39]
 gi|149232384|gb|EDM37760.1| two-component regulatory system histidine kinase [Pedobacter sp.
           BAL39]
          Length = 374

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 79/388 (20%), Positives = 163/388 (42%), Gaps = 26/388 (6%)

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
           E      +E       I  + +E+   +L   +E  +  +  +N EGII   N+A     
Sbjct: 9   EKESYQELEQRIAAYEIRVKDLEVVNEELSDFIENAALPLHWVNGEGIITWANQAELSAL 68

Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
           GY  E+ + +P + F       ++   L+ +                 K+  +  + I  
Sbjct: 69  GYLKEEYIGQPISKF--HADQDIIADILSRL--TKYETLHNYRARLVCKDGTIKHVLISS 124

Query: 546 KKLPFSSCYS---LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
             L     +        DI+    E+ +              K+DF++ VSHE++TPLT+
Sbjct: 125 NVLEKEGKFIHTRCFTRDITPLVLEEQR--------------KNDFVSMVSHELKTPLTS 170

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           I+ + +V+ + R     +    +  +  ++    +  ++ND L++S++E  K+ L   P 
Sbjct: 171 ILSYVQVMLS-RTSKTSDAFISQALSRTEKQAKSMTRMINDFLNMSRLEQAKVQLDIAPF 229

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
            L+E + E    ++L  +   I            I AD   + Q+  N+++NAI ++P  
Sbjct: 230 DLNELLHEVAEEIELTNHTHHIQY---AHAGEISISADRAKLSQVLDNLINNAIKYSPEH 286

Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
             I +        +V + VRD G+G++  + ++  + F ++ +       G G+GL L  
Sbjct: 287 STITVGFEQV-GTDVKIYVRDQGIGISEADQKRLFERFYRVESKATKHATGFGIGLYLVA 345

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            ++  +  K  + S+P +G+    + P+
Sbjct: 346 EILRYHHSKIEVVSSPGEGSTFFFLMPI 373


>gi|84687780|ref|ZP_01015651.1| sensor histidine kinase/response regulator [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84664216|gb|EAQ10709.1| sensor histidine kinase/response regulator [Rhodobacterales
           bacterium HTCC2654]
          Length = 600

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 95/414 (22%), Positives = 172/414 (41%), Gaps = 16/414 (3%)

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII 474
                ++        +  +     D      +++I   +L S +E   DG A+ + E  +
Sbjct: 35  LSRHARSLSEDLVETREEVVEVREDLERKTVEVDIAKRRLWSSIETVEDGFAVFDAESRL 94

Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
           +  N A    F           +   +E      +       +       LE+    + +
Sbjct: 95  VIANPAYYAPFDGLECIRPGAHYEEIVEAALSEGIVDIGERTVPEWRDWMLERWATDAPE 154

Query: 535 EEKLLSLRIIIKKLPF----SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
             ++        +L               D+++  + ++ L  A+  AE  S  KS FLA
Sbjct: 155 PRQIRLWNGAYLRLVDRRAPGGDTVSMAMDVTQAIRRQDALRAARARAEAASRAKSAFLA 214

Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650
            +SHEIRTP+  ++G ++++         +     Y + I  SG  +L I+ND+LD SKI
Sbjct: 215 NMSHEIRTPMNGVVGMADLMAEHDL----DEEMASYVDTIRSSGRALLTIINDVLDYSKI 270

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIAL 709
           E+ K+ LH EP  L++ + + I+LV     EK + I       +P R   D   V+QI  
Sbjct: 271 EAAKLELHLEPFDLEQTILDVIALVMPSIREKGLKIMLDVDMFLPTRYEGDPVRVRQILT 330

Query: 710 NILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           N++ NA+ FT  G  ++         +    V + V DTG+G+     +     F Q+ +
Sbjct: 331 NLIGNAVKFTAKGHILVRVIGMPDGGDARQRVHVTVEDTGIGIPRDMQDHVFGEFNQVED 390

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL--IEIIFP-LYDTSHP 816
            +    EGTGLGL + + +V   +G+ ++ S    G+     +  P + + S P
Sbjct: 391 ERNRSFEGTGLGLAITRQLVSLMLGEVWVESEEGIGSCFGFALSLPVVAEASLP 444


>gi|332093888|gb|EGI98942.1| signal transduction histidine-protein kinase atoS [Shigella boydii
           5216-82]
          Length = 555

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 85/371 (22%), Positives = 171/371 (46%), Gaps = 28/371 (7%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            + +         I+E  +DG+  I+R+G + + N A   + GY   +++ +P+++    
Sbjct: 201 AQALRETRTLNDLIIENAADGVIAIDRQGDVTTMNPAAEVITGYQRHELVGQPYSMLF-- 258

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMH 559
           +     +  L  +        LE    G     + + L +   ++  +        +   
Sbjct: 259 DNTQFYSPVLDTLKHGTEHVALEISFPGRD---RTIELSVTTSRIHNTHGEMIGALVIFS 315

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           D++  K+ + +++ A+++A        + +A V+HE+R PLTAI G+ ++++ Q    + 
Sbjct: 316 DLTARKETQRRMAQAERLAT-----LGELMAGVAHEVRNPLTAIRGYVQILRQQTSDLI- 369

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
              + EY + + +  + +  ++  LL+ S+    +    ++ VSL+  V E + LVQ   
Sbjct: 370 ---HQEYLSVVLKEIDSINKVIQQLLEFSRPRHSQ----WQQVSLNALVEETLVLVQTAG 422

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
            + R+   +   N +  I AD   +KQ+ LNIL NA+    + G+I I T   S+ +  +
Sbjct: 423 VQARVDFISELDNELSPINADRELLKQVLLNILINAVQAISARGKIRIQTWQYSDLQQAI 482

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            + D G G+     +K   PF     S      GTGLGL L++ +++A+ G   + S P 
Sbjct: 483 SIEDNGCGIDLSLQKKIFDPFFTTKAS------GTGLGLALSQRIINAHQGDIRVASLPG 536

Query: 800 KGTLIEIIFPL 810
            G    +I P+
Sbjct: 537 YGATFTLILPI 547



 Score = 40.8 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 27/271 (9%), Positives = 76/271 (28%), Gaps = 9/271 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G +  ++       G    +++G     +    +    + + D LK          
Sbjct: 225 IDRQGDVTTMNPAAEVITGYQRHELVGQPYSMLF--DNTQFYSPVLDTLKHGTEHVALEI 282

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
            +P     + + +  +   I++ + E  G     I        + +    + ++  +   
Sbjct: 283 SFPGRDRTIELSVTTS--RIHNTHGEMIGA--LVIFSDLTARKETQRRMAQAERLATLGE 338

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
            +      V      I          +  + +           ++    K  +    E S
Sbjct: 339 LMAGVAHEVRNPLTAIRGYVQ--ILRQQTSDLIHQEYLSVVLKEIDSINKV-IQQLLEFS 395

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
            P    +  ++LN   ++          +   +++S  ++       D            
Sbjct: 396 RPRHSQWQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSPINADRELLKQVLLNIL 455

Query: 329 CPIPFFVYSHGNLFYANPSFLLLTKYKSVDD 359
                 + + G +      +  L +  S++D
Sbjct: 456 INAVQAISARGKIRIQTWQYSDLQQAISIED 486


>gi|240850020|ref|YP_002971413.1| sensory box histidine kinase [Bartonella grahamii as4aup]
 gi|240267143|gb|ACS50731.1| sensory box histidine kinase [Bartonella grahamii as4aup]
          Length = 568

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 116/378 (30%), Positives = 192/378 (50%), Gaps = 25/378 (6%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
           ++ +  E   + S+L+  +DG+  ++ EG I S +RA   L GY + ++  +P +     
Sbjct: 201 EQALVKEPAAVLSLLDTATDGVLWLDEEGFIQSASRAALALMGYEINELRGQPLSSLFTL 260

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGS--TKEEKLLSLRIIIKKLPFSSCYSLTMHDI 561
            +   +  Y   I +    Q L +       TK  K +++ I I  L     Y++ + D 
Sbjct: 261 QSRFFVEKYFKSIRAEGKNQVLNRRETADLMTKNHKNITVLITIVFLAQQGNYAVMLRDR 320

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           ++             +       + D +  V HEIRTPL A+IGF+E+++  RFG + N 
Sbjct: 321 TQ------------TVPSGGKKAEEDKIVGVVHEIRTPLNALIGFAEIMREGRFGSIENE 368

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIE----SGKMN--LHFEPVSLDEAVSEAISLV 675
           RY  Y   I  SG  +L ++N LL+ SKI     + +++  +  E   +   +   I+ +
Sbjct: 369 RYRGYLRDIISSGKHILLLINQLLECSKINYSGSNNQIDSSIISETFDVISCLRATIAFL 428

Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
           +  AN+  I++R     ++P I    +  +QI  N+LSNAI FTP GGQII+  ++    
Sbjct: 429 ETQANQNGIIMRIVAPPHVPFIPVSQQVFRQIIWNLLSNAIRFTPLGGQIIVHVSYRKE- 487

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE----GTGLGLPLAKAMVDANMGK 791
            V + V D G+GM   E+ +A+KP+GQ+       G+    GTGLGLP+ KAMV+   G+
Sbjct: 488 RVKISVSDNGIGMNEEEIVQALKPYGQVERKDGRSGDSAFIGTGLGLPMCKAMVEERGGQ 547

Query: 792 FYIFSTPAKGTLIEIIFP 809
           F +FS P  GT +E+ FP
Sbjct: 548 FLLFSKPNHGTTVEMFFP 565



 Score =  138 bits (347), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 56/286 (19%), Positives = 106/286 (37%), Gaps = 15/286 (5%)

Query: 59  QESVSNTNYLD-SENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMR 117
            E   NTN L   +  F F P      FTW ID +G   E+S+EL + +G  +  ++G  
Sbjct: 6   DELKLNTNELKCQQEAFRFTPELLPRPFTWEIDHNGLFCEVSKELAEVVGPLSSSILGCS 65

Query: 118 LCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSG 177
             +++   + D    +   ++    W  +   WP++G   ++ ++L+ALPI+   ++  G
Sbjct: 66  FRELAHQFNDDRYLVLSHFIEAAMPWSKEIVQWPVDGCLQWLDVELSALPIFDVKKQLKG 125

Query: 178 FRGFGIV---------HVNRVDNDPRALGKRLDKKFSHLHEIKKGH---SSVEKEKYDIF 225
           FRGFG++            +++ +   L +     F  + E  +     S  EK+  +  
Sbjct: 126 FRGFGVLKIRKKVQEKRDEKLETEMPCLTEIERSAFHEIAEKLRDELNSSVKEKKLVEET 185

Query: 226 SQQSPPPHLRMKN--KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY 283
           + Q P       N  + + + E  A    +       L   EE  +          +   
Sbjct: 186 AIQLPYTQTLPVNAIEQALVKEPAAVLSLLDTATDGVLWLDEEGFIQSASRAALALMGYE 245

Query: 284 TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
             +     L +       +   +   S+ A          ET D  
Sbjct: 246 INELRGQPLSSLFTLQSRFFVEKYFKSIRAEGKNQVLNRRETADLM 291


>gi|253700622|ref|YP_003021811.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21]
 gi|251775472|gb|ACT18053.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21]
          Length = 796

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 97/637 (15%), Positives = 197/637 (30%), Gaps = 41/637 (6%)

Query: 190 DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH 249
           + +     + +        E     +   +           P   R+ +    +      
Sbjct: 44  ETEAEINARIVGGLIDETPESLHTQAHRLEGMLPQNRNSGHPDFSRILDADGHVLATMGE 103

Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
                   K   +     +    E   ++               +     F  L  R   
Sbjct: 104 PPAEPAITKSHDIVFAGKTTGSMEISRSLRPILTKTALVAVFGLSVGLVVFILLPFRAIN 163

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
             +    +  N   + ++       V +  G +   N     ++ Y+  D       +  
Sbjct: 164 RANRKLQDSYNFLTKVMESSANAVIVLNPDGKIGMVNGRCTEMSGYRREDLYGSE--IDR 221

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
           LL         A    +   S             ++ +                Q     
Sbjct: 222 LLCPQSFDTVLAQ---LRQVSSGEAEIVKFETDLLRKDGSTIA--IACGATPVCQEGRVA 276

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
                     + R +  +++       ++++A    I  ++ +G +   NR   ++ GY 
Sbjct: 277 STVLSVENITERRRSVEQLKAAKEYTENLIQAACVMILGLDLKGNVTLLNRTAEEVTGYD 336

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL-RQTLEKITLGSTKEEKLLSLRIIIKK 547
            ++++ K +   +           +  ++   + R   E   +      + +S R     
Sbjct: 337 ADELIGKNWFETVMGAEAFYKMCTIPGMVGESVNRCAFENQIVTKEGLVRTISWRNSAII 396

Query: 548 LPFSS-CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
              +         DI+E ++ + +L H++K+              V+H+    L+ I+G+
Sbjct: 397 EKDARLGTLCFGIDITEHRKIEAQLRHSQKM-----ESIGQLAGGVAHDFNNMLSVIMGY 451

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
           +++ + +      N     Y   I ++G    D+V  LL  S+ E     +  + V L+ 
Sbjct: 452 AQLCQIEVD---ENSSLWLYLGEIVKAGERSRDMVRKLLAFSRKE----IISPKAVDLNI 504

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726
              E    +     E+ I +    A  +  +  D   V QI +N+  NA    P GG++ 
Sbjct: 505 LCIETEKTLSRLIGEE-IKLNFIPATTLWTVKIDPSQVDQILMNLAVNARDAMPEGGRLT 563

Query: 727 ISTT--------------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           I T                   E   L V DTG GM     ++  +PF    +     G+
Sbjct: 564 IGTENATVDEAFCDYRLDARPGEYACLTVADTGFGMDRELTKRIFEPFFTTKD----VGK 619

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GTGLGL     +V  N G   + S P +GT   I  P
Sbjct: 620 GTGLGLATVYGIVTQNGGFLDVDSEPGEGTSFRIYLP 656



 Score = 37.7 bits (86), Expect = 8.6,   Method: Composition-based stats.
 Identities = 6/32 (18%), Positives = 14/32 (43%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCD 120
           +D  G +  ++    +  G  A ++IG    +
Sbjct: 316 LDLKGNVTLLNRTAEEVTGYDADELIGKNWFE 347


>gi|319427233|gb|ADV55307.1| hybrid periplasmic sensor histidine kinase, BarA [Shewanella
           putrefaciens 200]
          Length = 933

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 106/361 (29%), Positives = 163/361 (45%), Gaps = 20/361 (5%)

Query: 466 AIINREGIILSTNRAVSK-----LFGYPVEDILRKPFTVFLEQ---NTPSVMNHYLTEIL 517
            IIN+E  +L  +RA        L G  +  +        + Q       V+       L
Sbjct: 168 VIINKERALLEQHRAAVAAFIMVLLGVQLNLLFTFRLVKNVTQPITEMVRVVAKIREGKL 227

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN----KLSH 573
              L   L        +    ++  +                D+ E  ++      +L  
Sbjct: 228 DARLDGNLIGELDLLKRGINAMACSLSEYHDEMQQNIDQATSDLRETLEQIEIQNVELDL 287

Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
           AKK A + S  KS+FLA +SHE+RTPL  +IGF+  +         +   ++Y N I+RS
Sbjct: 288 AKKRALEASRIKSEFLANMSHELRTPLNGVIGFARQLVKTPL----HSSQVDYINTIERS 343

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693
              +L I+ND+LD SK+E+GKM L   P  L E + + ++L+   A  K + +    A N
Sbjct: 344 ATNLLAIINDILDFSKLEAGKMVLENMPFGLRETLGDTMTLISGSAQAKGLELVVDIAPN 403

Query: 694 IPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVILR--VRDTGVGMT 749
           +P  +  D   V QI  N++ NAI FT SG   + +     S E+VILR  V DTG+G+ 
Sbjct: 404 VPDHVNGDAMRVCQIINNLVGNAIKFTDSGSVLVKLELQSQSEEQVILRCDVIDTGIGID 463

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             + +   + FGQ  +S   R  GTGLGL + K +V+   G+    S+  KG+      P
Sbjct: 464 ESQQDFLFQAFGQADSSISRRFGGTGLGLVITKRLVNQMGGQIGFTSSVDKGSNFWFTLP 523

Query: 810 L 810
           L
Sbjct: 524 L 524


>gi|13475514|ref|NP_107078.1| two-component, nitrogen fixation sensor protein fixL [Mesorhizobium
           loti MAFF303099]
 gi|14026266|dbj|BAB52864.1| two-component, nitrogen fixation sensor protein; FixL
           [Mesorhizobium loti MAFF303099]
          Length = 532

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 83/510 (16%), Positives = 178/510 (34%), Gaps = 45/510 (8%)

Query: 321 LTPETVDKCP--IPFFVYSHGNLFYANPSFLLLTK---------YKSVDDIEIAGGLSTL 369
           L     D+ P  I             N ++  L             +  ++E       L
Sbjct: 33  LLSRMFDQAPGFIALMREPGHVFELTNAAYQQLIGNRQVIGKPVRDAFPELEGHEFFDHL 92

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
                  +      V +   + T      R+            + F+             
Sbjct: 93  DQVYTTGEPYRGHGVKVGLRNTTDGPVEERI------------LDFVYQPIKADDGRITA 140

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
                 +  +       + +    L SIL    D + +I+ +G I S + A   LFGY  
Sbjct: 141 IFIEGTDVSELSFANAALRLREDHLRSILATVPDAMVVIDEQGRIQSFSTAAETLFGYQS 200

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT--LEKITLGSTKEEKLLSLRIIIKK 547
            +++ +   + +        + YL   L+   R+   L +   G+ K+     + + + +
Sbjct: 201 SEVIGQNVKMLMPSPYRDEHDAYLLRYLTTGERRIIGLGRTVTGARKDGTTFPMELSVGE 260

Query: 548 LPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEKESS--HKSDFLARVSHEIRTPLTAI 603
           +   +   ++    D++E  + + ++   ++     +      +  + ++HEI  PLTAI
Sbjct: 261 MHPGTGRFFTGFCRDLTERHRAEARIQEQQQELLHMARFTALGEMASTLAHEINQPLTAI 320

Query: 604 IGFSEVIKN--QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI-SKIESGKMNLHFE 660
             + +  +   ++      P   +             D++  L D  ++ ES +  +   
Sbjct: 321 TNYLKGSRRLLEKSQDENAPMLRDAVERAAEQALRAGDVIRHLRDFVARGESER-QVERL 379

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720
           PV     + EA SL  + A E  +L+          +L D   ++Q+ LN++ NA+    
Sbjct: 380 PV----LIEEAASLALVGAREINLLVSYKLDPAAELVLTDRIQIQQVLLNLMRNAVEAMQ 435

Query: 721 --SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
                ++ ++T    +    + V DTG G+      +  +PF            G G+GL
Sbjct: 436 GSPRRELKVTTVARDDGMAEVSVIDTGPGLAPEVSAQLFQPFVTTKKH------GMGVGL 489

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            + + +V+++ G  +  + PA GT      
Sbjct: 490 SICRTIVESHGGHIWAEAIPAGGTAFRFTL 519



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 41/370 (11%), Positives = 94/370 (25%), Gaps = 34/370 (9%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNTWYGK 146
           ID  G ++  S       G  + ++IG  +  +    + D ++   +  L   +    G 
Sbjct: 179 IDEQGRIQSFSTAAETLFGYQSSEVIGQNVKMLMPSPYRDEHDAYLLRYLTTGERRIIGL 238

Query: 147 TTLW---PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                    +GT    P++L+   ++     F  F GF         +   A  +   ++
Sbjct: 239 GRTVTGARKDGTTF--PMELSVGEMHPGTGRF--FTGF--CRDLTERHRAEARIQEQQQE 292

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
             H+              ++I    +                 Y      L  +      
Sbjct: 293 LLHMARFTALGEMASTLAHEINQPLTA-------------ITNYLKGSRRLLEKSQDENA 339

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
                  E+     +      +       +  S+   E L      + S        +  
Sbjct: 340 PMLRDAVERAAEQALRAGDVIRHLRDFVARGESERQVERLPVLIEEAASLALVGAREINL 399

Query: 324 ETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
               K      +     +       LL     +V+ ++ +     L       D+   + 
Sbjct: 400 LVSYKLDPAAELVLTDRIQI--QQVLLNLMRNAVEAMQGSPRRE-LKVTTVARDDGMAEV 456

Query: 384 VMLYRSDRTCIAASARLHT---IQWNRENSLAMTFIPFEKANQFP----ENMPQNGIEPE 436
            ++          SA+L             + ++       +       E +P  G    
Sbjct: 457 SVIDTGPGLAPEVSAQLFQPFVTTKKHGMGVGLSICRTIVESHGGHIWAEAIPAGGTAFR 516

Query: 437 DVDTRINKRK 446
                + K +
Sbjct: 517 FTLRVVEKEE 526


>gi|110638300|ref|YP_678509.1| two-component sensor histidine kinase [Cytophaga hutchinsonii ATCC
           33406]
 gi|110280981|gb|ABG59167.1| two-component sensor histidine kinase [Cytophaga hutchinsonii ATCC
           33406]
          Length = 931

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 121/759 (15%), Positives = 244/759 (32%), Gaps = 55/759 (7%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG--KT 147
            A   L+  ++   + I   A  +      ++ ++        +  +L   N + G    
Sbjct: 188 GAEFVLELANDMYLQHIDKTADIVGKRLFEELPELEKQGVREMLNSVLDTGNPFVGTDVE 247

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                 G N  +  +    P+   +    G        V       +A+ +   +    +
Sbjct: 248 IRMKRNGINETLYFNFVYKPL-DDHETIPGIMIVC-SEVTDQVIAKKAMIENQQRLNIAI 305

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA---HKDDVLKTEKYPLLTS 264
                G   V  +  ++                    +      H+DDV   E+   +  
Sbjct: 306 EATALGTYEVNLKTAELVYSDRYLEIFGYAPHEKPGHKELVKCIHEDDVHIREQAFAIAF 365

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
           E S L  +      + +    + +     ++     + L      +     +E      E
Sbjct: 366 ETSKLFYEVRIILRDQSVRWLRAFGKVFFDDKGTPEKMLGTVMDITKEKAAEEKIRKANE 425

Query: 325 TVD-KCPIPFFVYSHGNLFY--ANPSFL--LLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
            ++             N+    AN S L   +  ++   D+     L  +  +    D  
Sbjct: 426 VLEIALQSAKLGTYELNIKSGKANFSLLCKEIFGFEPDKDV----TLEDVRSSTHPDDKE 481

Query: 380 AIKPVML-YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
             +  ML   +++    A  R+ T     ++   ++       +         G+     
Sbjct: 482 ITRSYMLEALANKQNYDAEYRIIT---ADKSIRWISISGKGVYDAEGNVKKLIGVIENIT 538

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
           D +  + ++ I V +   + ++    +   +  G +   N++V    G     I  + + 
Sbjct: 539 DRKHAEDELNISVQKFRLLADSMPQFVWTGDTAGNLNYFNQSVFDYTGLTPAQIYLEGWL 598

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK--LPFSSCYSL 556
             +  +          + +        E     +T E +    R I ++        +  
Sbjct: 599 QIVHPDDREENIEKWMQAIQTGNDFIFEHRFKKNTGEYRWQLSRAIAQRNKTGEIQMWVG 658

Query: 557 TMHDISEWK----QEKN-------KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
           T  DI + K    + +        +L +A    E  +     F    SH+++ PL  I  
Sbjct: 659 TSTDIQDQKTSAQKLEELIKERTKELKNANIELESMNQELRSFTYISSHDLQEPLRKIQT 718

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
           F   I+N   G L       Y   I +S N +  ++NDLL  S+  + +    FE  +L+
Sbjct: 719 FISRIQNSDSGTLSKE-GANYFARIQQSANKMKTLINDLLTYSRTSATEKV--FEKTNLN 775

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG--G 723
             + E  +       EK   +  S   N+P I A    ++Q+ +N++SNAI F+      
Sbjct: 776 LLLHEIKTEFTEVLKEKNGSLEIS---NLPEINAIPFQLRQLFINLISNAIKFSRPSVPP 832

Query: 724 QIIISTTH-----TSNEEVI-------LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
            I IS+       T N           + V D G+G      +K  + F ++        
Sbjct: 833 VIKISSAILLGRDTDNANAHENELYHQIIVSDNGIGFDPSYKDKIFEVFQRLHPKT--EY 890

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           EGTG+GL +   +   + G         KG    I  PL
Sbjct: 891 EGTGIGLSICTKIAQNHNGFISASGELNKGAAFTIYLPL 929



 Score = 54.6 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/128 (11%), Positives = 33/128 (25%), Gaps = 6/128 (4%)

Query: 74  FVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NH 132
           F         +F W  D  G L   ++ +    G    ++       +      + N   
Sbjct: 554 FRLLADSMP-QFVWTGDTAGNLNYFNQSVFDYTGLTPAQIYLEGWLQIVHPDDREENIEK 612

Query: 133 IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192
               ++  N +  +      + T  Y      A+   ++  E       G     +    
Sbjct: 613 WMQAIQTGNDFIFE--HRFKKNTGEYRWQLSRAIAQRNKTGEIQ--MWVGTSTDIQDQKT 668

Query: 193 PRALGKRL 200
                + L
Sbjct: 669 SAQKLEEL 676


>gi|323691898|ref|ZP_08106151.1| sensor protein [Clostridium symbiosum WAL-14673]
 gi|323504050|gb|EGB19859.1| sensor protein [Clostridium symbiosum WAL-14673]
          Length = 1053

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 125/796 (15%), Positives = 252/796 (31%), Gaps = 93/796 (11%)

Query: 87  WNIDAHGYLKEISEELPKTIG---------NYAFKMIGMRLCDVSDILHIDPNNH--IGD 135
           +  D     + ISE L  T G              + G           ++         
Sbjct: 150 YETDGSIVPEYISEGLAVTTGMTLKDTWELYQKDALTG------VHPDDLEGVRRQLDAY 203

Query: 136 LLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP-- 193
           L+  +N W  +  L    G  ++V   L+ +      R+   +  F  +   R +     
Sbjct: 204 LVSGKNHWEIEYRLLKGNGEYVWVKNTLSLIEHEGGERKI--YSTFNDMTKEREERARVC 261

Query: 194 ----RALGKRLDKKFSHLHEIKKGHSSVEK---EKYDIFSQQSPPPHLRMKNKVSSLTEY 246
                 L +   +   ++      + + ++         +          ++    L+  
Sbjct: 262 QQYDDLLLRHHQRSDPNVLVTGHCNITQDRIIQMSDQTGAGLLEAFGAVREDFFIGLSTL 321

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
              +++        L     ++    E   T ++      +  G                
Sbjct: 322 VEDEEERQSFRNTYLRAPALAAFERGETKRTQDVFVKLPNEGTGRYVRVEMNLVSTPDSG 381

Query: 307 NHPSLSAYFDEGENLTPETV---------DKCPIPFFVYSHGNLFYANPSFLLLTKYKSV 357
           +   +    D  E      +         D             +   +     +  ++ V
Sbjct: 382 DVTGILTVLDITEQTISNRISCQLSVTGYDFVADVDLRRDTYKIISLDEKACCVPPHQGV 441

Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLY--RSDRTCIAASARLHTIQWNRENSLAMTF 415
                +  +  LL +  +  +       L   R             +   +      +  
Sbjct: 442 ----HSFRVDRLLQSGVVPRDREQFRDGLNPGRMLERLKHGQTYTFSYSMDDNG--DIRT 495

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM---QLCSILEATSDGIAIINREG 472
                A              +  D+   ++++   +    +L   ++A S    +  R+ 
Sbjct: 496 KNITVAPIDLRLGRVCLSRTDITDSIREQQRLLRVIAYTCELAGFIDAASGSFIMYTRQM 555

Query: 473 II--------LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
           I+         + N  +  L G     +  +         T       L  +      + 
Sbjct: 556 ILENLPPHTTQNYNEVLDNLAGCYGTAVSHEEVKHMFCLET------LLHRLAE--KPEG 607

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEK 580
            + +      +        ++          L   D+++    +     +L  A K++ +
Sbjct: 608 YDFVLPYQVTDSLRYKQVNVLWGDQNHKTVCLVRSDVTDMLAAERAAKTELERALKLSRE 667

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            S  KSDFL+ +SH+IRTP+ AI+G + + K     P+   R ++    I  +   +L++
Sbjct: 668 ASLAKSDFLSAMSHDIRTPMNAIMGMTTLAKANSGDPV---RVLDCLQKISAASGHLLNL 724

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI--PRIL 698
           +ND+LD++KIE  ++ L+ E + L + + +   ++   A +  +         I  P   
Sbjct: 725 INDVLDMNKIERAQITLNREKIYLPDLIKQIGEIIAPQAEQAGLCCEI-LPGGIRNPCFY 783

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE------VILRVRDTGVGMTNYE 752
            D   + QI +NIL NA+ FTP GG +                     VRDTG+GM    
Sbjct: 784 GDTLRISQILINILGNAVKFTPRGGSVRFLAEEIPGAAGSGQACYRFTVRDTGIGMAKET 843

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF---- 808
           L+   +PF +  +    R EGTGLGL + K +VD   G   + S P KGT   +      
Sbjct: 844 LDHLFEPFVR--SRAVSRVEGTGLGLSIVKGLVDLMGGSVSVQSEPEKGTTFFVELKGEV 901

Query: 809 -------PLYDTSHPH 817
                  PL +   P 
Sbjct: 902 VESGEWRPLREPQLPE 917


>gi|258592021|emb|CBE68326.1| putative Histidine kinase [NC10 bacterium 'Dutch sediment']
          Length = 528

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 91/273 (33%), Positives = 143/273 (52%), Gaps = 26/273 (9%)

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
            +L  AK+ AE+ S HKS FL+ +SHE+RTPL +IIGF+ ++++     L   + ++   
Sbjct: 253 RQLLEAKQQAEEASRHKSLFLSNMSHELRTPLNSIIGFASLLQDPIVSSLP-EKELQLMR 311

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
           +I  SG  +L ++NDLLDISK+E+GK+ L  +   L EA+  A+   +  A +K+  +  
Sbjct: 312 HISTSGEHLLALINDLLDISKVEAGKLILQPQAFPLGEAIEAAVYTFRPQAAQKQQDLGL 371

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT---------------- 732
           S  +++P I AD    KQI  N+LSNA+ FTP GG+I ++                    
Sbjct: 372 SMDHDMPIIKADPIRFKQILYNLLSNAVKFTPVGGRIKVAARIAPGVGHQKAGSNDVDPL 431

Query: 733 --------SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
                     E V + V DTG+G+   +L K  + F Q+  +   + +GTGLGL L K +
Sbjct: 432 HPIPCTQYPGECVEIAVSDTGIGIRCEDLSKLFQLFTQLEPTLTKQFQGTGLGLALTKQL 491

Query: 785 VDANMGKFYIFST-PAKGTLIEIIFPLYDTSHP 816
           V+ + G     S  P +G+   +  PL     P
Sbjct: 492 VELHGGTIGAASEGPGRGSTFTVRLPLPSPERP 524


>gi|257093581|ref|YP_003167222.1| multi-sensor signal transduction histidine kinase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257046105|gb|ACV35293.1| multi-sensor signal transduction histidine kinase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 436

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 85/408 (20%), Positives = 164/408 (40%), Gaps = 36/408 (8%)

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK--RKMEIEVMQLCSI---LEATSDG 464
           ++ + ++    +  FP+     G     +  ++    R +E    +L S    ++A  DG
Sbjct: 55  AVLLAWLDSPGSAGFPDTGGAWGDVFLRLSRKLRHDARTLEAVEARLRSFRDAMDAVPDG 114

Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
           + I++    I   NRA     G  +           +          YL           
Sbjct: 115 LVILDASHRIQWHNRAAEAHLGIRLPRDTGAIIEQLVR---TPGFADYLGSPDPTASFLL 171

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
                       +++ L              L   D+++ ++ +              S 
Sbjct: 172 QSAALRTRVYALRVVPL--------GEQHKLLVSLDVTDARRVE--------------SM 209

Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
           +S+F+A VSHE+RTPLT + GF E   ++  G +   + + +A  +      +L +V+DL
Sbjct: 210 RSEFVANVSHELRTPLTVVSGFLEHFADE--GTMSADQRLHFARLMSDQTARMLSLVDDL 267

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704
           L +S++E+       E V + + +++ +S  Q  +  +    R + +   P +  D + +
Sbjct: 268 LTLSRLEAEDAPASEEDVDMADLLAQLLSEGQSLSEGRH---RLAVSCRGPALRGDRKEL 324

Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764
                N++SNAI +TP+GG I I  T       +  VRD+GVG+    L +  + F ++ 
Sbjct: 325 HSAFGNLVSNAIRYTPAGGAIAIEWTLRDGNG-MFSVRDSGVGIAAQHLPRLTERFYRVD 383

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
             +     GTGLGL + K ++  +     I S   +G+     FP + 
Sbjct: 384 RGRSRDTGGTGLGLAIVKHILLRHQATLAIESQVGEGSTFCAEFPAWR 431



 Score = 37.3 bits (85), Expect = 10.0,   Method: Composition-based stats.
 Identities = 16/236 (6%), Positives = 57/236 (24%), Gaps = 28/236 (11%)

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSV-------DD 359
                   +       + +D  P    +      + + N +       +         + 
Sbjct: 90  DARTLEAVEARLRSFRDAMDAVPDGLVILDASHRIQWHNRAAEAHLGIRLPRDTGAIIEQ 149

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
           +    G +  L +P  + +  ++   L                +    E    +  +   
Sbjct: 150 LVRTPGFADYLGSPDPTASFLLQSAALRT--------RVYALRVVPLGEQHKLLVSLDVT 201

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA-TSDGIAIINREGII-LST 477
            A +      +               ++   +  +   LE    +G    ++        
Sbjct: 202 DARRVESMRSEFVANV--------SHELRTPLTVVSGFLEHFADEGTMSADQRLHFARLM 253

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN--HYLTEILSLDLRQTLEKITLG 531
           +   +++     + +            +   ++    L ++LS     +  +  L 
Sbjct: 254 SDQTARMLSLVDDLLTLSRLEAEDAPASEEDVDMADLLAQLLSEGQSLSEGRHRLA 309


>gi|228984189|ref|ZP_04144371.1| hypothetical protein bthur0001_8970 [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228775476|gb|EEM23860.1| hypothetical protein bthur0001_8970 [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 883

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 77/338 (22%), Positives = 147/338 (43%), Gaps = 18/338 (5%)

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            +D +++            +    +  +L      T E        + +   L++  ++L
Sbjct: 382 HQDFIQQTVDNLGLTIHSIMGRMRIQTLLHESQAMTEELQVQSEELQTQAEELQMQAEEL 441

Query: 549 PFSSCYSLTMHDISEWKQEKN-----KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
             ++    +  + +E K         +L        + S +KS+FLA +SHE+RTPL +I
Sbjct: 442 RTTNEQLESRTEEAEQKTADLQITKLELEEKASELLRSSKYKSEFLANMSHELRTPLNSI 501

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +  SE+++      L +    E A  I  SG  +L ++ND+LD+SK+E+GK+++ FE  +
Sbjct: 502 LLLSEMLRENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIFEATN 560

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSG 722
           + +  +         A +K +      ++ IP +   D + ++QI  N+LSNA  FT  G
Sbjct: 561 ISDMAASMHQNFLHIAAQKNVEFTVEDSDMIPDLFYTDAKRIEQIIKNLLSNAFKFTEKG 620

Query: 723 GQ------IIISTTHTS-----NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
                   +  S           + + + V+DTG+G+   + +   + F Q   +   + 
Sbjct: 621 SVSLHFDSVETSNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGATIRKY 680

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            GTGLGL + K       G   + S   +G+   +  P
Sbjct: 681 GGTGLGLSICKEFARLLGGWITLESHVGEGSTFTVYIP 718


>gi|254283696|ref|ZP_04958664.1| integral membrane sensor hybrid histidine kinase [gamma
           proteobacterium NOR51-B]
 gi|219679899|gb|EED36248.1| integral membrane sensor hybrid histidine kinase [gamma
           proteobacterium NOR51-B]
          Length = 512

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 84/287 (29%), Positives = 140/287 (48%), Gaps = 6/287 (2%)

Query: 532 STKEEKLLSLRIIIKKLPFSSCYSL-TMHDISE-WKQEKNKLSHAKKIAEKESSHKSDFL 589
               E  L+ RI   +          T +D+S   ++   ++  AK  A+  ++ KS FL
Sbjct: 223 RRFGEGDLTHRINETRDAGEIRDLARTFNDMSAKLQRAIEEVHDAKADADAANAAKSMFL 282

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFG--PLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           A VSHE+RTPL AIIG+SE+++++      L   ++      I  SG  +L ++ND+LD+
Sbjct: 283 ANVSHELRTPLNAIIGYSEMLQDELSDGQQLDQDQFHHDLGTIIFSGRQLLSLINDILDL 342

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707
           SK+E+GKM +  E V     + +    +     +K   +  S A+++P + +D   ++QI
Sbjct: 343 SKMETGKMTVSLETVDPAALIYQICDALSPLITQKNNTLTLSIADDLPEMESDPAKLQQI 402

Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
             N+ SNA  FT  G  I +      N  +++ V+D G+G+   +     + F Q  +S 
Sbjct: 403 VTNLFSNACKFTEDG-VIEVIARIEKN-SLLIAVKDNGIGIAEAQQANVFEAFEQAESST 460

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
             +  GTGLGL + +       G   + STP KG+      PL   S
Sbjct: 461 GSKYGGTGLGLAIVREFCRMLGGDITLESTPGKGSTFTATLPLDQES 507


>gi|186894604|ref|YP_001871716.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Yersinia pseudotuberculosis PB1/+]
 gi|186697630|gb|ACC88259.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Yersinia pseudotuberculosis PB1/+]
          Length = 604

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 83/376 (22%), Positives = 163/376 (43%), Gaps = 28/376 (7%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           ++++R+++        I+     G+   N E +I   N    K+FG   + +  +     
Sbjct: 234 QLSRRQLQDSKAISTEIINNLPIGLITTNEEQLISVVNHTAEKIFGISKDILTGQNIHQA 293

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL---- 556
           L      ++        S   +  +E       KE  ++ L I +  +   +   L    
Sbjct: 294 LPPEWNLLVK------KSQRHQPVIEHEIDYKLKEGLIIPLSISVANIVNHNGSFLGNIF 347

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
              D+ E +Q + ++   +K+A        +  A V+HEIR PL++I GF++    +   
Sbjct: 348 IFRDMREVRQLQEEIRRKEKLA-----AIGNLAAGVAHEIRNPLSSIKGFAKYF--EGHS 400

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
           P G+    E A  + +  + +   V +LL + +      +L  + V+++E ++ ++ L++
Sbjct: 401 PQGSEEQ-ELAKVMIKEVDRLNRAVTELLGLVRPS----DLRIQLVNINEIIAHSLHLIR 455

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
             A+ K+I I+     N+PR+  D     Q  LN+  NAI      G + I+       +
Sbjct: 456 QDADSKKITIQFISNENLPRVEIDPDRFTQALLNLYLNAIQAMGRAGTLEIALALVEESK 515

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           + + V DTG G+   +LE    P+     S      GTGLGL + + +++ + G+  + S
Sbjct: 516 LRISVIDTGKGIRAEDLENIFNPYFTTKAS------GTGLGLAIVQKVIEEHQGRITVTS 569

Query: 797 TPAKGTLIEIIFPLYD 812
            P  GT  ++  PL  
Sbjct: 570 HPQSGTRFDMTIPLVQ 585



 Score = 38.1 bits (87), Expect = 6.4,   Method: Composition-based stats.
 Identities = 31/257 (12%), Positives = 63/257 (24%), Gaps = 11/257 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            +    +  ++    K  G     + G  +            N +    +R         
Sbjct: 261 TNEEQLISVVNHTAEKIFGISKDILTGQNIHQALPPEW----NLLVKKSQRHQPVIEHEI 316

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
            + ++   L +P+ ++   I + N  F G     I    R     +   +R +K  +  +
Sbjct: 317 DYKLK-EGLIIPLSISVANIVNHNGSFLG--NIFIFRDMREVRQLQEEIRRKEKLAAIGN 373

Query: 209 EIKKGHSSVEKEKYDIFSQQSP-PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
                   +      I         H    ++   L +    + D L      LL     
Sbjct: 374 LAAGVAHEIRNPLSSIKGFAKYFEGHSPQGSEEQELAKVMIKEVDRLNRAVTELL---GL 430

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
             P       +N+N+          Q+   +        N        D           
Sbjct: 431 VRPSDLRIQLVNINEIIAHSLHLIRQDADSKKITIQFISNENLPRVEIDPDRFTQALLNL 490

Query: 328 KCPIPFFVYSHGNLFYA 344
                  +   G L  A
Sbjct: 491 YLNAIQAMGRAGTLEIA 507


>gi|254483091|ref|ZP_05096325.1| Two component regulator three Y motif family [marine gamma
            proteobacterium HTCC2148]
 gi|214036613|gb|EEB77286.1| Two component regulator three Y motif family [marine gamma
            proteobacterium HTCC2148]
          Length = 1484

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 80/248 (32%), Positives = 127/248 (51%), Gaps = 12/248 (4%)

Query: 569  NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
             +L  A+K AE  +  KSDFLA +SHEIRTP+  +IG +E++ +       + +  ++A 
Sbjct: 837  RELQDAQKSAESANQAKSDFLATMSHEIRTPMHGMIGMTELLLHTDL----SEQQKQFAR 892

Query: 629  YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
                SG  +L ++N++LD SKIE+ K+ L      L E + E   L    A  K + + +
Sbjct: 893  AAHNSGESLLSLINEILDFSKIEASKVELENIEFDLVELIDEICYLQGEPAARKGLALNS 952

Query: 689  SFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH------TSNEEVILRV 741
             F    P  +L D   V+Q+ +N++SNAI FT +G  I +  T+       +  +V + V
Sbjct: 953  IFDQTPPKTLLGDPTKVRQVVMNLVSNAIKFTHTG-NIDVCVTYKNSEDDRNKNDVTISV 1011

Query: 742  RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            +DTG+GM      +  + F Q   S      GTGLGL ++K  ++   G   I S P  G
Sbjct: 1012 KDTGIGMDAATQNRVFEVFTQADTSTTREYGGTGLGLSISKHYIELMNGTIAIESQPNIG 1071

Query: 802  TLIEIIFP 809
            T + +  P
Sbjct: 1072 TDLSVTVP 1079


>gi|190895341|ref|YP_001985633.1| two-component sensor histidine kinase/response regulator hybrid
           protein [Rhizobium etli CIAT 652]
 gi|190699286|gb|ACE93370.1| probable two-component sensor histidine kinase/response regulator
           hybrid protein [Rhizobium etli CIAT 652]
          Length = 644

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 89/518 (17%), Positives = 178/518 (34%), Gaps = 38/518 (7%)

Query: 317 EGENLTPETVDKCPI--PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
           + E      VD       + +   G +   N        YK  + +      S       
Sbjct: 12  QEEGRFRLLVDAITDYAIYMLSPEGIVTSWNTGAQRFKGYKPSEILGE--HFSRFYIDED 69

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
            +     + +                   + +     A   +         E +    I 
Sbjct: 70  RAAGIPERALATALEQGR---FEGEGWRQRKDGSRFWA-HVVIDPIRRPSGELIGFAKIT 125

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDIL 493
            +  + +  +  +     Q   +++  SD  I +++ EG + S N    ++ GY  E+I+
Sbjct: 126 RDLTERKAAENAIRQSEEQFRRLVQGVSDYAIYMLDPEGNVSSWNFGAERIKGYRPEEII 185

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553
            + F+ F      +      T +         E+      K+       I++  +     
Sbjct: 186 GRHFSTFYTPEDRAAGLPE-TALSVARAEGRFEREGWRVRKDGTRFWASIVVDVIRGDDG 244

Query: 554 YSL----TMHDISEWKQEKNKLSHAKKIAEKES--SHKSDFLARVSHEIRTPLTAIIGFS 607
             L       DI+E  + +  L  A++   +             ++H+    L A++G  
Sbjct: 245 DVLGFAKITRDITEKMETQRALEQAREELFQSQKMEAIGQLTGGIAHDFNNLLMAVLGSL 304

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
           E++K +    L         +   +       +   +L  S+    +  LH EP+ +   
Sbjct: 305 EILKKRMPQDLS---LTSLVDNAMQGAQRGAALTQRMLAFSR----RQELHMEPIDVSGL 357

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727
           V   + ++   +      I T +   +P IL D   ++   LN++ NA    P+GG+I +
Sbjct: 358 VRGMMDILS-RSLGPLTTIETYYPVRLPTILTDPNQLEMAILNLVVNARDAMPAGGRITL 416

Query: 728 STTHT----------SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
             +            +   V + V D G GM    LE+A+ PF          G+GTGLG
Sbjct: 417 RASEESIAAGKGPLSAGRYVRIAVVDEGEGMDAKTLEQAVTPFFTTKG----VGKGTGLG 472

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
           L + + +   + G+  + S+P +GT  E+ FP+     
Sbjct: 473 LSMVQGLATQSGGRLVLKSSPGQGTTAELWFPVVVVEQ 510



 Score = 76.2 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 43/430 (10%), Positives = 114/430 (26%), Gaps = 43/430 (10%)

Query: 67  YLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH 126
            L  E  F       T    + +   G +   +    +  G    +++G           
Sbjct: 10  SLQEEGRFRLLVDAITDYAIYMLSPEGIVTSWNTGAQRFKGYKPSEILGEHFSRFYIDED 69

Query: 127 ID---PNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI 183
                P   +   L++   + G+      +G+  +  + +   PI   + E  GF    I
Sbjct: 70  RAAGIPERALATALEQGR-FEGEGWRQRKDGSRFWAHVVID--PIRRPSGELIGFAK--I 124

Query: 184 VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSS-VEKEKYDIFSQQSPPP---HLRMKNK 239
                         ++ +++F  L +    ++  +   + ++ S           R +  
Sbjct: 125 TRDLTERKAAENAIRQSEEQFRRLVQGVSDYAIYMLDPEGNVSSWNFGAERIKGYRPEEI 184

Query: 240 VSS-LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFH-TINLNQYTKKQYFGTLQNNSK 297
           +    + +Y  +D      +  L  +      E+E +    +  ++        ++ +  
Sbjct: 185 IGRHFSTFYTPEDRAAGLPETALSVARAEGRFEREGWRVRKDGTRFWASIVVDVIRGDDG 244

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP--------IPFFVYSHGNLFYANPSFL 349
           +   +       +             E + +               +   NL  A    L
Sbjct: 245 DVLGFAKITRDITEKMETQRALEQAREELFQSQKMEAIGQLTGGIAHDFNNLLMAVLGSL 304

Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
            + K +   D+ +   +   +   +       + +   R           +  I  +   
Sbjct: 305 EILKKRMPQDLSLTSLVDNAMQGAQRGAALTQRMLAFSRRQ------ELHMEPIDVSGLV 358

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL---EATSDGIA 466
              M  +                  P  +         ++E+  L  ++   +A   G  
Sbjct: 359 RGMMDILSRSLGPLTTIETYYPVRLPTILTDPN-----QLEMAILNLVVNARDAMPAG-- 411

Query: 467 IINREGIILS 476
                G I  
Sbjct: 412 -----GRITL 416



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 41/430 (9%), Positives = 100/430 (23%), Gaps = 43/430 (10%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + +D  G +   +    +  G    ++IG                    L   +     
Sbjct: 157 IYMLDPEGNVSSWNFGAERIKGYRPEEIIGRHFSTFYTPEDRAAGLPETALSVARAEGRF 216

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +   W +          +    I   + +  GF    I        + +   ++  ++  
Sbjct: 217 EREGWRVRKDGTRFWASIVVDVIRGDDGDVLGFAK--ITRDITEKMETQRALEQAREELF 274

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHL------RMKN--KVSSLTEYYAHKDDVLKTE 257
              +++          +D  +              RM     ++SL +            
Sbjct: 275 QSQKMEAIGQLTGGIAHDFNNLLMAVLGSLEILKKRMPQDLSLTSLVDNAMQGAQRGAAL 334

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
              +L           +   ++                      Y   R    L+     
Sbjct: 335 TQRMLAFSRRQ-ELHMEPIDVSGLVRGMMDILSRSLGPLTTIETYYPVRLPTILTDPNQL 393

Query: 318 GENLTPETV---DKCPIP--FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
              +    V   D  P      + +      A    L   +Y  +  ++   G+      
Sbjct: 394 EMAILNLVVNARDAMPAGGRITLRASEESIAAGKGPLSAGRYVRIAVVDEGEGMDAKTLE 453

Query: 373 PKLSD------NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
             ++             + L         +  RL       + + A  + P     Q   
Sbjct: 454 QAVTPFFTTKGVGKGTGLGLSMVQGLATQSGGRLVLKSSPGQGTTAELWFPVVVVEQRVT 513

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
                    +D   R+                      I  ++ +G++L     + +  G
Sbjct: 514 AAADVPQPDDDAGRRLR---------------------IVAVDDDGLVLMNTTLMLEDLG 552

Query: 487 YPVEDILRKP 496
           + V + +  P
Sbjct: 553 HTVFEAMAGP 562


>gi|37519668|ref|NP_923045.1| two-component hybrid sensor and regulator [Gloeobacter violaceus
           PCC 7421]
 gi|35210659|dbj|BAC88040.1| two-component hybrid sensor and regulator [Gloeobacter violaceus
           PCC 7421]
          Length = 785

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 100/578 (17%), Positives = 199/578 (34%), Gaps = 70/578 (12%)

Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLL 350
                     E L         A  +  E           I +   S G +    PS+  
Sbjct: 63  AALREHNARLEALLGEGRLKAPALLESEERYRSLITVTSAIVWTAGSDGAIVEEVPSWEE 122

Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
            T     +  +  G +  L    + S     +     +               + + E  
Sbjct: 123 FTGQSP-EQYQGWGWVEMLHPEDRASTAEIWRQANANKR-----PVEVEYRLRRRDGEYR 176

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV-------MQLCSILEATSD 463
             +        N         G   +  D ++ +++ E+ +        +L  + EA+  
Sbjct: 177 HMVA-RGVPLLNAGGRLCSWVGTVTDIHDRKVAEQQRELRLLQAKRHTTRLQKLAEASLA 235

Query: 464 GIAIINREGIILSTNRAVSKLFG-------YPVEDILRK---------PFTVFLEQNTPS 507
             + ++ + ++       + L G          E    +          +  +       
Sbjct: 236 INSALSIQQVLQGITEQAAALIGAHMALTSLTPERDWARAVHTVYLSDKYRYWHHGEARL 295

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK----------LPFSSCYSLT 557
                  ++   +    L +  L    + +LL+     +           +         
Sbjct: 296 GGVGIAADVCRTNRPARLTQSQLEGHPQGRLLAFGATDRPALRGWLAAPLVGRDGRNIGL 355

Query: 558 MH-------DISEWK------------------QEKNKLSHAKKIAEKESSHKSDFLARV 592
           +        D SE                    +       AK  AE+ +  K +FLA +
Sbjct: 356 IQLSDKHEGDFSEEDEAIAVQLAQLASVAIENTRLFEAEQAAKVDAEEANRLKDEFLATL 415

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHE+R+PLTAI+G++++++    G +   R       I+R+      ++ DLLDIS+I +
Sbjct: 416 SHELRSPLTAILGWTKLLRQVDLGAV---RAAHALEVIERNALAQNQLIEDLLDISRIVA 472

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712
           GK+ +    V L   +  AI  V+  A  + I + T     +P ++ D   ++Q+  N+L
Sbjct: 473 GKLRIEAAAVDLAGVIEAAIGTVRPAAQARAIEVDTEIEPGVPLLMGDATRLQQVVWNLL 532

Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           +NA+ FTP+GG++ +  +        + V D+G+G+  + L    + F Q  +S      
Sbjct: 533 ANAVKFTPNGGRVRVRLSRR-GTAAEVAVSDSGLGIAPHLLPHVFERFRQADSSSTRSHG 591

Query: 773 GTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFP 809
           G GLGL + + +V+ + G     S    +G    +  P
Sbjct: 592 GLGLGLAIVRQLVELHSGTVSAASPGEGQGATFTVRLP 629



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/208 (10%), Positives = 60/208 (28%), Gaps = 8/208 (3%)

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
           +A + + L R   +                +   +     E        + ++    E +
Sbjct: 16  SADRALPLERPIHSTWPTEVSAADPADPAASEGLVMACSPENLLAEIAALREHNARLEAL 75

Query: 439 --DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             + R+    +     +  S++  TS  +     +G I+    +  +  G   E      
Sbjct: 76  LGEGRLKAPALLESEERYRSLITVTSAIVWTAGSDGAIVEEVPSWEEFTGQSPEQYQGWG 135

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--- 553
           +   L     +       +  +    + +E       ++ +   +      L  +     
Sbjct: 136 WVEMLHPEDRASTAEIWRQANANK--RPVEVEYRLRRRDGEYRHMVARGVPLLNAGGRLC 193

Query: 554 -YSLTMHDISEWKQEKNKLSHAKKIAEK 580
            +  T+ DI + K  + +       A++
Sbjct: 194 SWVGTVTDIHDRKVAEQQRELRLLQAKR 221


>gi|120598068|ref|YP_962642.1| hybrid sensory histidine kinase BarA [Shewanella sp. W3-18-1]
 gi|146293861|ref|YP_001184285.1| hybrid sensory histidine kinase BarA [Shewanella putrefaciens
           CN-32]
 gi|120558161|gb|ABM24088.1| Hpt sensor hybrid histidine kinase [Shewanella sp. W3-18-1]
 gi|145565551|gb|ABP76486.1| Hpt sensor hybrid histidine kinase [Shewanella putrefaciens CN-32]
          Length = 933

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 106/361 (29%), Positives = 163/361 (45%), Gaps = 20/361 (5%)

Query: 466 AIINREGIILSTNRAVSK-----LFGYPVEDILRKPFTVFLEQ---NTPSVMNHYLTEIL 517
            IIN+E  +L  +RA        L G  +  +        + Q       V+       L
Sbjct: 168 VIINKERALLEQHRAAVAAFIMVLLGVQLNLLFTFRLVKNVTQPITEMVRVVAKIREGKL 227

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN----KLSH 573
              L   L        +    ++  +                D+ E  ++      +L  
Sbjct: 228 DARLDGNLIGELDLLKRGINAMACSLSEYHDEMQQNIDQATSDLRETLEQIEIQNVELDL 287

Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
           AKK A + S  KS+FLA +SHE+RTPL  +IGF+  +         +   ++Y N I+RS
Sbjct: 288 AKKRALEASRIKSEFLANMSHELRTPLNGVIGFARQLVKTPL----HSSQVDYINTIERS 343

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693
              +L I+ND+LD SK+E+GKM L   P  L E + + ++L+   A  K + +    A N
Sbjct: 344 ATNLLAIINDILDFSKLEAGKMVLENMPFGLRETLGDTMTLISGSAQAKGLELVVDIAPN 403

Query: 694 IPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVILR--VRDTGVGMT 749
           +P  +  D   V QI  N++ NAI FT SG   + +     S E+VILR  V DTG+G+ 
Sbjct: 404 VPDHVNGDAMRVCQIINNLVGNAIKFTDSGSVLVKLELQSQSEEQVILRCDVIDTGIGID 463

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             + +   + FGQ  +S   R  GTGLGL + K +V+   G+    S+  KG+      P
Sbjct: 464 ESQQDFLFQAFGQADSSISRRFGGTGLGLVITKRLVNQMGGQIGFTSSVDKGSNFWFTLP 523

Query: 810 L 810
           L
Sbjct: 524 L 524


>gi|119899672|ref|YP_934885.1| putative two-component system sensor protein [Azoarcus sp. BH72]
 gi|119672085|emb|CAL95999.1| putative two-component system sensor protein [Azoarcus sp. BH72]
          Length = 868

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 87/671 (12%), Positives = 208/671 (30%), Gaps = 61/671 (9%)

Query: 178 FRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK 237
            RG  +       ++   LG +L      +   +  H  +     ++  +          
Sbjct: 219 ARGSSLPRPVTGADELGLLGVQLAALMKEVVASRDYHIRLLDRLPNLIWRTGADGRADYF 278

Query: 238 NKVS--------------SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY 283
           N+                   +     D       +     E S    +      +    
Sbjct: 279 NRAWLGFTGCSLEDGQGMGWLDCIHPDDREHFARTFRAALDERSPFSVEYRLAHRSGGHR 338

Query: 284 TKKQYFGTLQNNSKESFEYLSH----RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG 339
               +   + +       Y+      +     +A     E      V++  +  ++   G
Sbjct: 339 WVSDHGEPVFDAEGRLQAYIGSGFDVQQEKDAAAEIAASEQRFRSLVERTLVGVYLIRGG 398

Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399
           ++ YANP       Y   + +E     + +           ++     R           
Sbjct: 399 HMVYANPRLAEWFGYTPKE-LEGMPVAALVHPDDLPLVAEKLRQ----RESGELECVQYT 453

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459
               + +           +    +        G   +       +  ++        ++E
Sbjct: 454 FRGRRRDGSYF---PVEAYGTRIEQAGGAAVIGTLLDHTQRARYEAALKAASE----VVE 506

Query: 460 ATSDGIAII--NREGIILSTNRAVSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTE 515
           A+   +          ++  +  V + +GY   D+L+    FT  +  +    +   +  
Sbjct: 507 ASPTVLFRWLPRPGWPVVYVSENVDR-WGYRARDMLQPAFRFTDLIHPDERDQVTQMVDG 565

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRI-IIKKLPFSSCYS---LTMHDISEWKQEKNKL 571
            ++    +         T +   + +    + +               DI+E +  ++++
Sbjct: 566 FIAGGQGE-YTLEYRIRTSDGNYIWIEDRTVVQRDDEGGVLHLAGLATDITERRCAEDEV 624

Query: 572 SHAKKIAEKE-----------SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
                  E             +     F   VSH+++ PL  I G+S ++       L +
Sbjct: 625 RALNAELEARVAQRTAQLAALNQELETFAYSVSHDLKAPLRGIDGYSHLLLEDHSDRLDD 684

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
                + ++I      +  +++DLL  S++E  +  L    V+L + V   ++  +    
Sbjct: 685 E-GRLFISHIRTGVRQMARLIDDLLAYSRVE--RRTLQRTAVNLQDMVRGILAERRAELE 741

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG--GQIIISTTHTSNEEVI 738
           +    I         R+ AD   + Q+  N++ NA+ ++      +I+IS     N    
Sbjct: 742 QGPAQIVLEVPP--LRVQADPEGLSQVLRNLIDNALKYSRDAQPPRIVISAA-EQNGVCH 798

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           +RV+D G+G      ++  + F ++   +Q    GTG+GL + +  V    G+ +  S P
Sbjct: 799 IRVQDNGIGFDMKFHDRIFEIFQRL--QRQEDYAGTGIGLAIVRKAVQRMGGRVWAESAP 856

Query: 799 AKGTLIEIIFP 809
            +G    +  P
Sbjct: 857 DEGACFHLELP 867



 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 43/405 (10%), Positives = 113/405 (27%), Gaps = 16/405 (3%)

Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH 233
           E  GF   G+                   +     +       V        ++Q+    
Sbjct: 103 ERVGFARLGLETPPADLVTAARRTLAGQVREEPDRDRLWAVFPVRLPSLGEGARQTGYTV 162

Query: 234 LRMKNKVSSLTEYYAHKDDVLKT----EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYF 289
           L M  +    +         L          L           +    +     ++ +  
Sbjct: 163 LAMDTRTLRRSALRQALGQSLIVFVPILLLSLGIGALVKFLLTDRIEQLLAYARSQARGS 222

Query: 290 GTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY-SHGNLFYANPSF 348
              +  +      L      +L        +     +D+ P   +   + G   Y N ++
Sbjct: 223 SLPRPVTGADELGLLGVQLAALMKEVVASRDYHIRLLDRLPNLIWRTGADGRADYFNRAW 282

Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
           L  T   S++D +  G L  +       D+          +       S        +  
Sbjct: 283 LGFTGC-SLEDGQGMGWLDCI-----HPDDREHFARTFRAALDERSPFSVEYRLAHRSGG 336

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468
           +   ++       +         G   +    +    ++     +  S++E T  G+ +I
Sbjct: 337 H-RWVSDHGEPVFDAEGRLQAYIGSGFDVQQEKDAAAEIAASEQRFRSLVERTLVGVYLI 395

Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528
            R G ++  N  +++ FGY  +++   P    +  +   ++   L +       + ++  
Sbjct: 396 -RGGHMVYANPRLAEWFGYTPKELEGMPVAALVHPDDLPLVAEKLRQ-RESGELECVQYT 453

Query: 529 TLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKNKL 571
             G  ++     +     ++  +       T+ D ++  + +  L
Sbjct: 454 FRGRRRDGSYFPVEAYGTRIEQAGGAAVIGTLLDHTQRARYEAAL 498



 Score =  115 bits (288), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 38/379 (10%), Positives = 101/379 (26%), Gaps = 17/379 (4%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTW 143
             W   A G     +       G       GM   D       +         L  ++ +
Sbjct: 265 LIWRTGADGRADYFNRAWLGFTGCSLEDGQGMGWLDCIHPDDREHFARTFRAALDERSPF 324

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +  L    G   +  +     P++        + G G     + + D  A     +++
Sbjct: 325 SVEYRLAHRSGG--HRWVSDHGEPVFDAEGRLQAYIGSGF--DVQQEKDAAAEIAASEQR 380

Query: 204 FSHLHEIKKGHSSVEKEK-YDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL- 261
           F  L E       + +       + +          ++  +        D L      L 
Sbjct: 381 FRSLVERTLVGVYLIRGGHMVYANPRLAEWFGYTPKELEGMPVAALVHPDDLPLVAEKLR 440

Query: 262 --LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
              + E   +         + + +  + Y   ++         +      +  A ++   
Sbjct: 441 QRESGELECVQYTFRGRRRDGSYFPVEAYGTRIEQAGGA--AVIGTLLDHTQRARYEAAL 498

Query: 320 NLTPETVDKCPIPFFVY--SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
               E V+  P   F +    G         +    Y++ D ++ A   + L+   +   
Sbjct: 499 KAASEVVEASPTVLFRWLPRPGWPVVYVSENVDRWGYRARDMLQPAFRFTDLIHPDERDQ 558

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
              +    +              + I+ +  N + +      + +     +   G+  + 
Sbjct: 559 VTQMVDGFIAGGQGEYT----LEYRIRTSDGNYIWIEDRTVVQRDDEGGVLHLAGLATDI 614

Query: 438 VDTRINKRKMEIEVMQLCS 456
            + R  + ++     +L +
Sbjct: 615 TERRCAEDEVRALNAELEA 633


>gi|264679332|ref|YP_003279239.1| multi-sensor signal transduction histidine [Comamonas testosteroni
           CNB-2]
 gi|262209845|gb|ACY33943.1| multi-sensor signal transduction histidine [Comamonas testosteroni
           CNB-2]
          Length = 458

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 85/458 (18%), Positives = 175/458 (38%), Gaps = 47/458 (10%)

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
           LL A  ++    +    +       I          WN    L         A      +
Sbjct: 14  LLWAYLVAPGATVLQQCVAAMTGALIGGWIWWLVDSWNGARLLHWLRQSELGAVPNLAGI 73

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSIL---EATSDGIAIINREGIILSTNRAVSKLF 485
                       R + ++++    +L  IL   +A+ +G+ +++ +G I   N+  +K F
Sbjct: 74  WGEASVRMRRWIRQSVQQVQQGDQRLNDILSALQASPNGVVLLDAQGRIEWCNQISAKQF 133

Query: 486 GYPVEDILRKPFTVFLEQNTPSVM---NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
           G+  E  + +     +     S       +  +++      T  +             ++
Sbjct: 134 GFDAERDVLQSIGNLVRDPQFSAYFAAQDFSHDLVMQGRESTPSR------------PVK 181

Query: 543 IIIKKLPFSSCY-SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
           + ++   +      L   D++  +Q +              + + DF+A VSHEIRTPLT
Sbjct: 182 LSVQLYGYGEGRKLLLARDVTALEQAE--------------AMRRDFVANVSHEIRTPLT 227

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
            + GF E ++N    PL       Y   + +    +  +V DLL +S++E   +  + + 
Sbjct: 228 VLAGFVETLQN---LPLEEDERRRYLELMAQQAERMQHLVEDLLTLSRLEGSPLPSNNDW 284

Query: 662 VSLDEAVSEAISLVQ------LYANEKRILIRTSFANNIPRILAD----LRSVKQIALNI 711
           VS+ + ++   +  +           K  ++       + +   D       +     N+
Sbjct: 285 VSVAQLLNRCENEARGLSNALTRKQAKPHVLNFPDEQALRQA-GDLAGASAELHSAFSNL 343

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           L+NA+ +TP+GGQI +      +      V+D+G G+    + +  + F ++  S+    
Sbjct: 344 LANAMRYTPAGGQIDVRWQLLPDGSARFAVKDSGPGIDEKHVSRLTERFYRVDRSRSRDT 403

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            GTGLGL + K ++  +  +  I S   KG+   + FP
Sbjct: 404 GGTGLGLAIVKHVLQRHGARLSIESELGKGSEFAVTFP 441



 Score = 38.1 bits (87), Expect = 6.6,   Method: Composition-based stats.
 Identities = 36/326 (11%), Positives = 78/326 (23%), Gaps = 23/326 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +DA G ++  ++   K  G  A + +   +       ++  +         Q+ +     
Sbjct: 116 LDAQGRIEWCNQISAKQFGFDAERDVLQSI------GNLVRDPQFSAYFAAQD-FSHDLV 168

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           +   E T    P+ L+              R   +           A+ +      SH  
Sbjct: 169 MQGRESTPSR-PVKLSVQLYGYGEG-----RKLLLARDVTALEQAEAMRRDFVANVSHEI 222

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
                  +   E       +        + +   L    A +   L  +   L   E S 
Sbjct: 223 RTPLTVLAGFVETLQNLPLEE-----DERRRYLELMAQQAERMQHLVEDLLTLSRLEGSP 277

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
           LP   D+ ++       +     L N            N P   A    G+         
Sbjct: 278 LPSNNDWVSVAQLLNRCENEARGLSNALTRKQAKPHVLNFPDEQALRQAGDLAGASAELH 337

Query: 329 CPIPFFVYSHGNLFYANPSFLLLT-----KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
                 + +      A     +               +   G+     +        +  
Sbjct: 338 SAFSNLLANAMRYTPAGGQIDVRWQLLPDGSARFAVKDSGPGIDEKHVSRLTERFYRVDR 397

Query: 384 VMLYRSDRTCIAASARLHTIQWNREN 409
                +  T +  +   H +Q +   
Sbjct: 398 SRSRDTGGTGLGLAIVKHVLQRHGAR 423


>gi|325521000|gb|EGC99950.1| putative signal transduction histidine kinase [Burkholderia sp.
           TJI49]
          Length = 445

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 74/381 (19%), Positives = 159/381 (41%), Gaps = 21/381 (5%)

Query: 438 VDTRINKRKMEIEVMQLC--SILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILR 494
           +  + + R ++    +    +++ + +D  + +++ +G + + N    ++ GY  ++I+ 
Sbjct: 14  LPLQADARDLQHRFAEFRFQTVVGSITDYAVFMLDPQGYVATWNAGAERIKGYRADEIVG 73

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-- 552
           + F+ F   +  +        +         +       K+  L    + I  +  ++  
Sbjct: 74  RHFSRFYPPDAVAAGRPAY-GLAQAAAHGHFDDEGFRVRKDGSLFWASVTITAVRDAANQ 132

Query: 553 --CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
              +     D+++ ++ +          E  +   S F+A ++HE+R  L  +     V+
Sbjct: 133 LCGFIKITRDMTDRRRLEE--------LEASTHRLSVFIAMLAHELRNHLAPLRNSVGVL 184

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
           ++    P   P  ++  + +DR    +  +V+DLLD+ +I +GK+ L   P+++ + V  
Sbjct: 185 QS---LPDPAPTLVQCRDAVDRQVAQLTRLVDDLLDVGRITAGKVELEDRPLTVRDLVCR 241

Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
            +  VQ     +   I          +  D   + Q+  N+L NA  F+P GG+I I   
Sbjct: 242 GVESVQPKLAAREQQISIDLPPEPVTLRGDDARLVQVLHNLLDNASKFSPRGGRIDIGAR 301

Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
                 V +RV D GVG+    LE     F Q     +   +G GLGL + ++ V+ + G
Sbjct: 302 VE-GTFVAIRVADRGVGIAPGALESIFDLFEQESVPGRHPSDGFGLGLAICRSFVELHGG 360

Query: 791 KFYIFS-TPAKGTLIEIIFPL 810
                S  P +G    +  P+
Sbjct: 361 MISAESGGPGQGATFTVRLPV 381



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 31/307 (10%), Positives = 77/307 (25%), Gaps = 29/307 (9%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI---DPNNHIGDLLKRQNT 142
            + +D  GY+   +    +  G  A +++G           +    P   +         
Sbjct: 44  VFMLDPQGYVATWNAGAERIKGYRADEIVGRHFSRFYPPDAVAAGRPAYGLAQA-AAHGH 102

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG----K 198
           +  +      +G+  +  + + A  +     +  GF    I            L     +
Sbjct: 103 FDDEGFRVRKDGSLFWASVTITA--VRDAANQLCGF--IKITRDMTDRRRLEELEASTHR 158

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP------------HLRMKNKVSSLTEY 246
                    HE++   + +      + S   P P              ++   V  L + 
Sbjct: 159 LSVFIAMLAHELRNHLAPLRNSVGVLQSLPDPAPTLVQCRDAVDRQVAQLTRLVDDLLDV 218

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYT----KKQYFGTLQNNSKESFEY 302
                  ++ E  PL   +      +     +   +            TL+ +     + 
Sbjct: 219 GRITAGKVELEDRPLTVRDLVCRGVESVQPKLAAREQQISIDLPPEPVTLRGDDARLVQV 278

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEI 362
           L +    +       G       V+   +   V   G +  A  +   +      + +  
Sbjct: 279 LHNLLDNASKFSPRGGRIDIGARVEGTFVAIRVADRG-VGIAPGALESIFDLFEQESVPG 337

Query: 363 AGGLSTL 369
                  
Sbjct: 338 RHPSDGF 344


>gi|229171763|ref|ZP_04299335.1| hypothetical protein bcere0006_8810 [Bacillus cereus MM3]
 gi|228611660|gb|EEK68910.1| hypothetical protein bcere0006_8810 [Bacillus cereus MM3]
          Length = 896

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 80/339 (23%), Positives = 152/339 (44%), Gaps = 20/339 (5%)

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            +D++++            +    +  +L      T E        + +   L++  ++L
Sbjct: 395 HQDLIQQTVDNLGLTIHSIMGRMRIQTLLHESQAMTEELQVQSEELQTQAEELQMQAEEL 454

Query: 549 PFSSCYSLTMHDISEWKQEK-----NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
             ++    +  + +E K        ++L        + S +KS+FLA +SHE+RTPL +I
Sbjct: 455 RTTNEQLESRTEEAEQKTADLQITKSELEEKASELLRSSKYKSEFLANMSHELRTPLNSI 514

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +  SE++K      L +    E A  I  SG  +L ++ND+LD+SK+E+GK+++ FE  +
Sbjct: 515 LLLSEMLKENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIFEATN 573

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSG 722
           + +  +         A +K +      ++ IP +   D + ++QI  N+LSNA  FT  G
Sbjct: 574 ISDMAANMHQNFLHIAAKKNVEFMIEDSDAIPDLFYTDAKRIEQIIKNLLSNAFKFTEKG 633

Query: 723 GQ------IIISTTHTS------NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
                   I  +T  +       N+ + + V+DTG+G+   + +   + F Q   +   +
Sbjct: 634 SVSLHFDSIE-TTHLSDDMQSISNDWMTISVKDTGIGIAKEQHQLIFEAFQQADGATIRK 692

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             GTGLGL + K       G   + S   +G+   +  P
Sbjct: 693 YGGTGLGLSICKEFARLLGGWITLESHVGEGSTFTVYIP 731


>gi|153819791|ref|ZP_01972458.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae NCTC 8457]
 gi|126509670|gb|EAZ72264.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae NCTC 8457]
          Length = 868

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 90/382 (23%), Positives = 160/382 (41%), Gaps = 24/382 (6%)

Query: 441 RINKRKMEIEVMQLC---SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP- 496
           R +++  ++   QL     +L+A    I I + +G ++ TN A  K++    E    +P 
Sbjct: 203 RSSEQVAKLSTEQLRWLTELLDAIPSMIFISDAKGEVVLTNAAYRKIYHTCCEKGCVQPQ 262

Query: 497 --FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554
              +     +        + +    +         +             I   +     Y
Sbjct: 263 PECSFLALPDQHEAEFSIIIQAPKSNCSIGEHYFHVTRRA---------ISHPINQRKYY 313

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
               +DI+E K+ +  L  + + A +    ++ FLA VSHE+RTP+ A++G  E++ ++ 
Sbjct: 314 LTLFNDITELKETEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGLMEILASR- 372

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
              L +            S   +   VND+LD SKIE+ ++ L     +L + +   +  
Sbjct: 373 ---LKSSESQLLLTNAISSAERLKLHVNDILDFSKIEAQQLQLDIGLYNLADELGPLLRG 429

Query: 675 VQLYANEKRILIRTSFANN-IPRILADLRSVKQIALNILSNAIHFTPSGGQI-IISTTHT 732
            +  A  K I     ++ N +     D     QI  N+LSNAI FT  G  +  I     
Sbjct: 430 FEASAQLKEIEFDVIWSPNSLLLANFDALRFNQIVTNLLSNAIKFTDQGRVVFKIDVAPE 489

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
               + + V DTG GMT  ++E    PF Q  ++   R  GTGLG+ +   +++   GK 
Sbjct: 490 ---MLTIVVEDTGCGMTQTQIESLFVPFAQADSTITRRFGGTGLGMSIVANLIELMNGKI 546

Query: 793 YIFSTPAKGTLIEIIFPLYDTS 814
            + S   +GT I++  PL   +
Sbjct: 547 EVKSEFEQGTQIQVNLPLVTQT 568


>gi|119513099|ref|ZP_01632152.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Nodularia spumigena CCY9414]
 gi|119462233|gb|EAW43217.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Nodularia spumigena CCY9414]
          Length = 444

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 75/233 (32%), Positives = 127/233 (54%), Gaps = 2/233 (0%)

Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
              + S  KS FLA +SHE+RTP+ AIIGFS+++   +FG L + +  +    I  +G  
Sbjct: 166 KLLEASRLKSQFLATMSHELRTPMNAIIGFSQILLRPKFGKLTH-QQTDMVERILNNGKN 224

Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696
           +L ++N++LD SK+E G++ L  E   L + ++  ++ ++  A  K++ +R       P 
Sbjct: 225 LLMLLNEVLDFSKLEGGRLELKPELFDLTKIINIVVAQMRSLAEAKKLSLRVDIDMQQPL 284

Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKA 756
           +  D   V+QI +N+LSNAI FT SG  I I        ++ + VRDTG+G+ + + +  
Sbjct: 285 VFNDSVRVRQILINLLSNAIKFTESG-CIWIEVKELPQNQLAIAVRDTGIGIASRDFKHI 343

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            + F Q+  S   +  GTGLGL +  ++V    G+  + S    G++  I  P
Sbjct: 344 FEAFRQVDQSITRKYPGTGLGLAIIDSLVQMMGGRIILESQLGVGSMFRIEIP 396


>gi|167842316|ref|ZP_02469000.1| periplasmic sensor hybrid histidine kinase [Burkholderia
           thailandensis MSMB43]
          Length = 809

 Score =  285 bits (729), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 91/380 (23%), Positives = 172/380 (45%), Gaps = 19/380 (5%)

Query: 450 EVMQL-CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
           E   L  +++E    G+A+I+    + S    +  L    +E  +  P     +      
Sbjct: 73  ESEHLSRTLIETAPVGLALID----LHSATPLIRSLAMTDLESAVDAPTPDLAKMLVARY 128

Query: 509 MNHYLTEILSLDLRQ--TLEKITLGSTKEEK--LLSLRIIIKKLPFSSCYSLTMHDISEW 564
           +       +   L +   +      + ++ +  + +LR+   +        + + D++  
Sbjct: 129 VRRQKKRPIVGRLARNRVIHDTLTLARRDGRDTIAALRLTQARYQGKDVLVVALTDVTAE 188

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           ++ + K+  A++ AE  ++ KS FLA  SHEIRTPL  I+G  E++             +
Sbjct: 189 RELQRKMLEARRAAESANAAKSAFLAATSHEIRTPLHGILGNLELLGRTPLSI----DQL 244

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           +  N + ++G  ++ ++ND+LD ++IESG+M     P  + +    ++ L    A EK +
Sbjct: 245 DRLNLVRQTGKHLVALINDILDFTRIESGEMWYERIPFDVFDVAERSLMLAAPSALEKSL 304

Query: 685 LIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILR 740
            +       N   ++ D   ++QI  N+LSNAI FT +G     + +      +++++L 
Sbjct: 305 ALLCELRITNARMLIGDPNRIEQILRNLLSNAIKFTHTGKITLTLEVVHAEPESQDLVLS 364

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V DTG+G++  +     + F Q   +   R  GTGLGL L K   +   G   + STP  
Sbjct: 365 VTDTGIGISPEQQAHVFEAFRQADETIARRYGGTGLGLSLCKRFAEGMHGTLTLRSTPDI 424

Query: 801 GTLIEIIFPLYDTSHPHDCI 820
           G+   +  PL  +S P D I
Sbjct: 425 GSRFTVRIPL--SSAPADAI 442


>gi|147678721|ref|YP_001212936.1| signal transduction histidine kinase [Pelotomaculum
           thermopropionicum SI]
 gi|146274818|dbj|BAF60567.1| signal transduction histidine kinase [Pelotomaculum
           thermopropionicum SI]
          Length = 982

 Score =  285 bits (729), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 76/253 (30%), Positives = 117/253 (46%), Gaps = 10/253 (3%)

Query: 563 EWKQEKN--KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           E K  +    L  AK+ A+  +  KSDFLA +SHEIRTP+  +IG +E++         N
Sbjct: 438 EQKVRERTSDLERAKREADTANRAKSDFLALMSHEIRTPMHGLIGTAELLMETPL----N 493

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
               EYA  I+ S  ++L I++D+LD S+IE GK+ L        +       L    A 
Sbjct: 494 EEQREYAAVINESSEMLLAIIDDILDFSRIEEGKLALEEAGFDPRQVEKRVAGLFAPKAG 553

Query: 681 EKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEE 736
            K +L  ++    +PR+   D   + Q+ LN++ NA+ FT  G    ++ +        +
Sbjct: 554 LKGLLFTSAVDAAVPRVLRGDPLRLGQVLLNLVGNAVKFTERGEVSLRVFVEKREGDIAK 613

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           +   VRDTG G+          PF Q   S   R  GTGLGL + + +V+   G+    S
Sbjct: 614 IRFEVRDTGPGIPEGVRSSLFDPFTQADASTTRRFGGTGLGLSICRRLVELMNGEIGFAS 673

Query: 797 TPAKGTLIEIIFP 809
              +G       P
Sbjct: 674 EEGRGATFWFTIP 686


>gi|116623865|ref|YP_826021.1| histidine kinase [Candidatus Solibacter usitatus Ellin6076]
 gi|116227027|gb|ABJ85736.1| histidine kinase [Candidatus Solibacter usitatus Ellin6076]
          Length = 1358

 Score =  285 bits (729), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 81/276 (29%), Positives = 143/276 (51%), Gaps = 13/276 (4%)

Query: 542  RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
            R+ I +L  +          SE  +   +L  AK  AE  +  K+ FLA +SHE+RTPL 
Sbjct: 848  RVRILRLGAARLERQVSERTSELLERTGELQIAKDAAEAANRAKTIFLANMSHELRTPLN 907

Query: 602  AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
            AI+GFS +++        +       + I+RSG  +L +V+++LD++KIE+G+  L   P
Sbjct: 908  AILGFSNLLREGDV----SEWQRNDLDIINRSGEHLLSLVDEVLDVAKIEAGRGVLEIAP 963

Query: 662  VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTP 720
              L   V + + ++   A  K + +  + ++ +PR + AD   ++Q+ +N++ NAI FTP
Sbjct: 964  YDLAGMVRDVMDMMGARAQMKGLALLHADSSGLPRYVRADGPRLRQVLINLVGNAIKFTP 1023

Query: 721  SGGQIIIST---THTSNEE--VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
            SG  + +         +    +   V DTG G+   + E+  +PF Q+  +   +  G+G
Sbjct: 1024 SGS-VTLRLDAGCVDDDGRFSLTFYVEDTGCGVAPEDHERIFEPFVQVGPAATKK--GSG 1080

Query: 776  LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
            LGL + + +V+   G   + STP KG+   +  P+Y
Sbjct: 1081 LGLAITRQLVEMMGGTVSVESTPGKGSRFRVEVPVY 1116


>gi|239617738|ref|YP_002941060.1| histidine kinase [Kosmotoga olearia TBF 19.5.1]
 gi|239506569|gb|ACR80056.1| histidine kinase [Kosmotoga olearia TBF 19.5.1]
          Length = 580

 Score =  285 bits (729), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 92/362 (25%), Positives = 161/362 (44%), Gaps = 13/362 (3%)

Query: 451 VMQLCSILEATSDGIAI-INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
              L ++ E  SD +A+ IN  G IL +  ++   F    +++    F    +++     
Sbjct: 212 EQMLNNMAENISDHLALRINERGEILYSTPSM-NNFVSSTKELS--RFLRGFDEDDRKKF 268

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKE-EKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568
                + L    +  L+          EK   ++    K   +    +   DI+E  + +
Sbjct: 269 LTTFEDSLFFGRQGELDLSIKPEGSSFEKRFLVKFYPTKYLGTKVVDVFFLDITEQLRRE 328

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
           N L   K+ AE  +  ++ F + +SHE+RTPLT I+G+SE +  +  GP          +
Sbjct: 329 NFLKKQKEEAELLNKSQAAFFSNISHELRTPLTIILGYSE-MLYEIVGPAE----RRMVS 383

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I  S N +L +VND+LDISKI S  + +  E V++   V+  +        +K I + +
Sbjct: 384 MIADSANYLLKLVNDILDISKITSRAVKVEPESVNIKLLVNNILEQFNSLVEKKGIKLES 443

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748
                    + D   +++I  N++ NAI FT  G  + +      +   +  V DTG+G+
Sbjct: 444 KLMICRENFVTDKTKLQRILTNLIGNAIKFTNEG-VVRVLVKEEGSNVFLFAVEDTGIGI 502

Query: 749 TNYELEKAMKPFGQIPNSQQIR--GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
                +K  + F QI + +      +GTGLGLPL K +V    G+ ++ S   KGT +  
Sbjct: 503 KKEYQDKVFERFVQIKDDRSRVKFKKGTGLGLPLTKELVQLLGGRIWLQSEYGKGTTVYF 562

Query: 807 IF 808
             
Sbjct: 563 TL 564


>gi|16125315|ref|NP_419879.1| sensor histidine kinase DivJ [Caulobacter crescentus CB15]
 gi|13637937|sp|Q03228|DIVJ_CAUCR RecName: Full=Histidine protein kinase divJ
 gi|13422363|gb|AAK23047.1| sensor histidine kinase DivJ [Caulobacter crescentus CB15]
          Length = 597

 Score =  285 bits (729), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 104/357 (29%), Positives = 182/357 (50%), Gaps = 11/357 (3%)

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
           L ++L+        +  +G + +   A     G    D++ +  T          +   +
Sbjct: 206 LETLLDGLPHLAIAVRGQGQVTAVRGAAP--PGVTRADLVNRGLTGAAAPGDRQRLTAAI 263

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH 573
            +              LG     ++++L +        +     + DI+  +  ++ L  
Sbjct: 264 AQAHREGSASLTFNPALGVE---RVVALDMHRV---APNQLVGVLRDITVERHREHALDQ 317

Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
           A+  AE  ++ ++ FLA +SHE+RTPL AI+GFS++++ + FGPL + RY EYA  I  S
Sbjct: 318 ARIDAEALAAGRARFLANMSHELRTPLNAIMGFSDIMRARMFGPLSD-RYAEYAELIHES 376

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693
           G  +LD++ND+LD+SKIE+ +  L        EAV  A+ L+++ ++   + +R      
Sbjct: 377 GGHLLDLINDVLDMSKIEAERFELQRGVFDAREAVQAAMRLLRVQSDTAGVQLRGVLPPG 436

Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753
              + AD R++KQI LN++SNA+ FTP GGQ+ + T H  +  + + V DTGVG++  +L
Sbjct: 437 ELEVDADRRALKQIVLNLVSNALKFTPRGGQVTV-TAHGYDGVLEIVVADTGVGISPEDL 495

Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           E+  +P+ Q   ++Q    GTGLGL L +A    + G+  I S    GT + +  P+
Sbjct: 496 ERLGRPYEQAGGAEQRA-RGTGLGLSLVRAFAQLHGGEMVIESRLGAGTTVSVRLPV 551


>gi|148264328|ref|YP_001231034.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter
           uraniireducens Rf4]
 gi|146397828|gb|ABQ26461.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter
           uraniireducens Rf4]
          Length = 891

 Score =  285 bits (729), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 99/789 (12%), Positives = 229/789 (29%), Gaps = 72/789 (9%)

Query: 64  NTNYLDSENTFVFDPIPRTVRF------TWNIDAHGYLKEISEELPKTIGNYAFKMIGMR 117
           NT    +E+   F        F         +D    +  ++      +G    ++ G  
Sbjct: 125 NTERKKTEDALRFSEERYRALFRDNPTMIVTLDTKWKMLSVNPFCASQLGYTTNELEGQS 184

Query: 118 LCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW-----PIEGTNLYVPIDLAALPIYSRN 172
           + ++           + + L+       +   W       +G+   + ++  A  +Y   
Sbjct: 185 VLNLFHEDD---RPAVTEQLQMCLRNPDQVYHWQFRKIRKDGSL--LWVEETAQAVYDLG 239

Query: 173 REFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP 232
                     +              ++L  +   +         +   + ++ +      
Sbjct: 240 GAL---NVLVVSQDITERKRAEEEQEQLLVQLDAVLNSINEGVIISDLEGNVLTMNPSAL 296

Query: 233 HLRMKNKVSSLTEY-----YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKK- 286
            +     V  +           +   L     P     ++     E F    ++   K  
Sbjct: 297 AIHEYENVEQVRRQLHLYQETFELSDLDGHPVPFEQWPQARALRGERFADYEVSVRRKDT 356

Query: 287 -----------QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV 335
                             +                +     E EN   +     P    +
Sbjct: 357 DKSWIGSYSGTPVQTKSGDIILSVVTLRDITERKRVEEALRESENKFSKVFQTTPSILVI 416

Query: 336 YS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393
            S   G     N +F  +  Y+  + I        +   P+         V+   ++   
Sbjct: 417 TSLADGRYLEVNEAFERVMGYRRDEVIGRTSMELHIWQNPEDRA-----IVLRMLAEGK- 470

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
                    I    ++   +  +   +  +         +  +    +  + ++     +
Sbjct: 471 ---KVHDMEIGLRNKSGTILVGLYSTEIIEIGAEQCLLNVLNDITARKKAEEELRHSEER 527

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY- 512
              +   T   +  I+ +G ++S +    +  GY   ++L +  T FL   +      + 
Sbjct: 528 YRRLYNDTPVMLHSIDHDGRLVSVSNYWLETLGYERSEVLGRLSTEFLTAASRYYATEFV 587

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS----LTMHDISEWKQEK 568
           L E          E       K  ++L + +       S          + D+++ KQ  
Sbjct: 588 LPEYYRTG--SCKEVPYQMVKKNGEILDVLLSAIAERDSEGKVVRSLAVIVDVTDRKQAD 645

Query: 569 NKLSHAKK-------IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
            ++              E  +     F   V+H++R PLT + G+ + I+      LG  
Sbjct: 646 EEIERLNTDLAARAAELEAANRELEAFNYTVAHDLRKPLTVVNGYCQAIQELCGDKLG-E 704

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
           +   +          +  +++ LL+ S++    +    E V       E  + ++L   +
Sbjct: 705 QCKGFLREAYDGTWRMNRLIDALLNFSRL--AHVETRRETVDFSAMAHEVAAELKLAEPK 762

Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF--TPSGGQIIISTTHTSNEEVIL 739
           +R+        +      D   ++ +  N+L NA  +        I  S T      V  
Sbjct: 763 RRVTF---LIADGVSADGDAALLRVVLDNLLGNAWKYSGMREETVIEFSATEIDGMPVYF 819

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            VRD GVG    + +K   PF ++P +     +G G+GL   + ++  + GK +    P 
Sbjct: 820 -VRDNGVGFNKADADKLFVPFQRLPGA--EECKGFGIGLATVEKIIRRHGGKVWAKGEPG 876

Query: 800 KGTLIEIIF 808
            G       
Sbjct: 877 NGATFYFTL 885



 Score =  177 bits (449), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 58/527 (11%), Positives = 158/527 (29%), Gaps = 24/527 (4%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH--IDPNNHIGDLLKRQNTW 143
            + +D  G +   +    +  G    ++IG                          +   
Sbjct: 26  VFMLDTQGNVLNWNAGAERLKGYRDEEIIGKHFSCFYTEEERAAGKPGEELKKAAAEGRV 85

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIV-HVNRVDNDPRALGKRLDK 202
             +      +G+  +  + + AL  +  N      RGF IV   N          +  ++
Sbjct: 86  ADEGWRIRKDGSRFWADVIITAL--HDENGNL---RGFSIVTRDNTERKKTEDALRFSEE 140

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
           ++  L             K+ + S             N++   +      +D        
Sbjct: 141 RYRALFRDNPTMIVTLDTKWKMLSVNPFCASQLGYTTNELEGQSVLNLFHEDDRPAVTEQ 200

Query: 261 L---LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL---SHRNHPSLSAY 314
           L   L + +     Q      + +    ++    + +        +              
Sbjct: 201 LQMCLRNPDQVYHWQFRKIRKDGSLLWVEETAQAVYDLGGALNVLVVSQDITERKRAEEE 260

Query: 315 FDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGL--STLLD 371
            ++        ++       +    GN+   NPS L + +Y++V+ +     L   T   
Sbjct: 261 QEQLLVQLDAVLNSINEGVIISDLEGNVLTMNPSALAIHEYENVEQVRRQLHLYQETFEL 320

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
           +         +     R+ R    A   +   + + + S   ++       +  + +   
Sbjct: 321 SDLDGHPVPFEQWPQARALRGERFADYEVSVRRKDTDKSWIGSYSGTPVQTKSGDIILSV 380

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVE 490
               +  + +  +  +     +   + + T   + I +  +G  L  N A  ++ GY  +
Sbjct: 381 VTLRDITERKRVEEALRESENKFSKVFQTTPSILVITSLADGRYLEVNEAFERVMGYRRD 440

Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL--SLRIIIKKL 548
           +++ +  ++ L           +  +L+    +  +       K   +L       I ++
Sbjct: 441 EVIGRT-SMELHIWQNPEDRAIVLRMLAEGK-KVHDMEIGLRNKSGTILVGLYSTEIIEI 498

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
               C    ++DI+  K+ + +L H+++   +  +     L  + H+
Sbjct: 499 GAEQCLLNVLNDITARKKAEEELRHSEERYRRLYNDTPVMLHSIDHD 545



 Score =  121 bits (303), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 28/284 (9%), Positives = 80/284 (28%), Gaps = 16/284 (5%)

Query: 313 AYFDEGENLTPETVDKCPIPF------FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
             F+     + E                + + GN+   N     L  Y+  + I      
Sbjct: 1   MQFELRLRESEELFHIQVEGVKDYAVFMLDTQGNVLNWNAGAERLKGYRDEEIIGK--HF 58

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
           S      + +     + +    ++            I+ +     A   I     ++   
Sbjct: 59  SCFYTEEERAAGKPGEELKKAAAEGRVAD---EGWRIRKDGSRFWA-DVIITALHDENGN 114

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
               + +  ++ + +  +  +     +  ++       I  ++ +  +LS N   +   G
Sbjct: 115 LRGFSIVTRDNTERKKTEDALRFSEERYRALFRDNPTMIVTLDTKWKMLSVNPFCASQLG 174

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
           Y   ++  +       ++    +   L   L     Q          K+  LL +    +
Sbjct: 175 YTTNELEGQSVLNLFHEDDRPAVTEQLQMCLRN-PDQVYHWQFRKIRKDGSLLWVEETAQ 233

Query: 547 KLPFSSC---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
            +          +   DI+E K+ + +        +   +  ++
Sbjct: 234 AVYDLGGALNVLVVSQDITERKRAEEEQEQLLVQLDAVLNSINE 277


>gi|326402800|ref|YP_004282881.1| putative two-component hybrid sensor and regulator [Acidiphilium
           multivorum AIU301]
 gi|325049661|dbj|BAJ79999.1| putative two-component hybrid sensor and regulator [Acidiphilium
           multivorum AIU301]
          Length = 632

 Score =  285 bits (729), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 89/525 (16%), Positives = 191/525 (36%), Gaps = 52/525 (9%)

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
           +      +       + +   I       G +   +     L  Y++ + I       ++
Sbjct: 2   TPEPEAPDAPLAFARSFEAALIG--KSLDGIITSWSEGAENLFGYRADEIIGR-----SI 54

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
                      +  ++   +          +   +      + +        +     + 
Sbjct: 55  HVLAPPGREAEMDELLARTARGETFDQFETIR--RRKDGTLVRVLLTLNPVHDTEGCIVG 112

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
            + I  +  + R  +        +L SIL+   D I +I+  G + S ++A  ++FGY  
Sbjct: 113 ISKIARDITEHRSTEA-------RLRSILDTAPDAIVVIDPRGTVRSFSQAAERMFGYAA 165

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT--LEKITLGSTKEEKLLSLRIIIKK 547
           E+++ +  ++ + +   +  + YL   L    R+   + +       +     + + + +
Sbjct: 166 EEVVGRNVSMLMAEPHAAAHDGYLARYLETGERRIIGIGREVEARRADGSTFPIELAVGE 225

Query: 548 --LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
             LP +  ++  + D S+ K+ +N L+ A+K+              ++H+    L  I G
Sbjct: 226 VDLPETRLFTGFIRDASKRKRLENDLAQAQKM-----EAVGQLTGGLAHDFNNLLAVISG 280

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
             E++++   G        E       +     ++   LL   +    +  L    + ++
Sbjct: 281 NLEMLESHVAGG----EAAELLAEARLATERGAELAARLLAFGR----RQTLRPLAIDVN 332

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725
           E V +   L +       ++I T  A  +PR +AD   ++   LN+  NA    P GG++
Sbjct: 333 ELVGKMAPLFR-RTLGSPVMIETRLAAGLPRTMADPGQIETALLNLALNARDAMPKGGRL 391

Query: 726 IISTTH--------------TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           +I T                   + V+L V D+G+GM+     +A +PF          G
Sbjct: 392 VIETGLLHVDADYAAQQAETLPGDYVVLAVTDSGIGMSAETRGRAFEPFFTTKA----VG 447

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           EG+GLGL +    V  + G   I+S P  GT + +  P      P
Sbjct: 448 EGSGLGLSMVYGFVKQSGGHVQIYSEPGLGTTVRLFLPAIRAEMP 492



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/310 (10%), Positives = 83/310 (26%), Gaps = 16/310 (5%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTW-YGKTTLW 150
            G +   SE      G  A ++IG  +  ++        + +     R  T+   +T   
Sbjct: 28  DGIITSWSEGAENLFGYRADEIIGRSIHVLAPPGREAEMDELLARTARGETFDQFETIRR 87

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL---DKKFSHL 207
             +GT + V + L   P++       G     I           A  + +         +
Sbjct: 88  RKDGTLVRVLLTLN--PVHDTEGCIVGISK--IARDITEHRSTEARLRSILDTAPDAIVV 143

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
            + +    S  +    +F   +     R  + + +     AH   + +  +         
Sbjct: 144 IDPRGTVRSFSQAAERMFGYAAEEVVGRNVSMLMAEPHAAAHDGYLARYLETGERRIIG- 202

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
            +  + +    + + +  +   G +       F               D  +    E V 
Sbjct: 203 -IGREVEARRADGSTFPIELAVGEVDLPETRLFTGFIRDASKRKRLENDLAQAQKMEAVG 261

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
           +              + N   ++    + ++     G  + LL   +L+     +     
Sbjct: 262 QLTGGLAHD------FNNLLAVISGNLEMLESHVAGGEAAELLAEARLATERGAELAARL 315

Query: 388 RSDRTCIAAS 397
            +        
Sbjct: 316 LAFGRRQTLR 325



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 49/444 (11%), Positives = 117/444 (26%), Gaps = 47/444 (10%)

Query: 43  NPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEEL 102
           NP HD+        +    ++     ++    + D  P  +     ID  G ++  S+  
Sbjct: 101 NPVHDTEGCIVGISKIARDITEHRSTEARLRSILDTAPDAIVV---IDPRGTVRSFSQAA 157

Query: 103 PKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWY----GKTTLWPIEGTNL 157
            +  G  A +++G  +  +    H    + ++   L+           +      +G+  
Sbjct: 158 ERMFGYAAEEVVGRNVSMLMAEPHAAAHDGYLARYLETGERRIIGIGREVEARRADGSTF 217

Query: 158 YVPIDLAALPI-YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSS 216
             PI+LA   +     R F+GF            +  +      D   +   E     + 
Sbjct: 218 --PIELAVGEVDLPETRLFTGFI----------RDASKRKRLENDLAQAQKMEAVGQLTG 265

Query: 217 VEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFH 276
                ++            +++ V+         +  L TE+   L +   +   ++   
Sbjct: 266 GLAHDFNNLLAVISGNLEMLESHVAGGEAAELLAEARLATERGAELAARLLAFGRRQTLR 325

Query: 277 TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV-------DKC 329
            + ++          L   +  S   +  R    L     +   +    +       D  
Sbjct: 326 PLAIDVNELVGKMAPLFRRTLGSPVMIETRLAAGLPRTMADPGQIETALLNLALNARDAM 385

Query: 330 PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389
           P    +     L + +  +          D  +     + +     +   A +P    ++
Sbjct: 386 PKGGRLVIETGLLHVDADYAAQQAETLPGDYVVLAVTDSGIGMSAETRGRAFEPFFTTKA 445

Query: 390 DRTCIAASARLHTIQWNRENSLAMTFI-------------------PFEKANQFPENMPQ 430
                     +      +       +                    P       P   P 
Sbjct: 446 VGEGSGLGLSMVYGFVKQSGGHVQIYSEPGLGTTVRLFLPAIRAEMPAADDEAAPSPPPD 505

Query: 431 NGIEPEDVDTRINKRKMEIEVMQL 454
             I     D    +R  E  + +L
Sbjct: 506 RAIVLVVEDDPAVRRVAERRLARL 529


>gi|317491023|ref|ZP_07949459.1| hsp90-like protein [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920570|gb|EFV41893.1| hsp90-like protein [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 913

 Score =  285 bits (729), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 90/333 (27%), Positives = 147/333 (44%), Gaps = 17/333 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           LF Y +   +  P    +               L   +   +             +++ +
Sbjct: 188 LFAYRLMRDVTGPIRNMVNTVDR-----IRRGQLDSRVEGHMLGELDMLKNGINSMAMSL 242

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 243 TAYHEEMQQNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTP 302

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+  +         N    +Y   I+RS N +L I+ND+LD SK+E+GK+ L  
Sbjct: 303 LNGVIGFTRQVLKTPL----NATQSDYLQTIERSANNLLTIINDVLDFSKLEAGKLVLEH 358

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P  L E + E   L+   A+EK I +  +  N++P  ++ D   ++Q+  N+L NAI F
Sbjct: 359 IPFLLRETIDEVTVLLAPSAHEKGIELTLNIRNDVPEHVIGDPMRIQQVLTNLLGNAIKF 418

Query: 719 TPSGGQ-IIISTTHTSNEEVILRV--RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T  G   I +     +  +V L V   DTG+G++  +  +  + F Q   S   R  GTG
Sbjct: 419 TEKGNIDIRVELRSATPHQVELEVLVHDTGIGISERQQSQLFQAFRQADASISRRHGGTG 478

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           LGL + + +V+   G     S P KG+      
Sbjct: 479 LGLVITQKLVNEMGGDISFHSQPNKGSTFWFHI 511


>gi|239905265|ref|YP_002952004.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239795129|dbj|BAH74118.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 825

 Score =  285 bits (729), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 88/416 (21%), Positives = 162/416 (38%), Gaps = 55/416 (13%)

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
           +    Q   I++  ++G+A+    G ++  N  + +L GY    +  KPF  FL  +   
Sbjct: 94  QTRQRQFADIIDGATEGVAVA-AGGRLVYVNPFMERLTGYDAATLRSKPFVDFLHPDDRR 152

Query: 508 VMNH-YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQ 566
            +   +L  +      Q      + +    + ++      +          + DISE K 
Sbjct: 153 TVLGIHLRRLAGGQAPQGHAFRIVTADGGLRHVNAASAWMEWEGRPATVSFLADISELKA 212

Query: 567 EKNKLSHA---------------------------------------KKIAEKESSHKSD 587
            +  L+                                         +    +    KS 
Sbjct: 213 AEQALAEHVHSQEEVIAARTASLRESNDRLAAEAARHERTAQKLKTARTKLARALRAKSV 272

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           FLA VSHEIRTPL  I+G +++      G  G          I  +G  +  I+ DLLD+
Sbjct: 273 FLANVSHEIRTPLNVILGMADLALRPDSG--GQADLTRCLEMIREAGTSLRGILGDLLDL 330

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQ 706
           S++ESG++ L   P S  + +   ++  +  A  + + +  + A ++P  ++ D   + Q
Sbjct: 331 SRVESGRLELDAAPFSPRQVLEATLAAHRHVAQRQGLALTGATAADVPEHVIGDAGRLAQ 390

Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSNEE--------VILRVRDTGVGMTNYELEKAMK 758
           +  N++ NA+ FT  GG + +  T              +   VRDTG+G+   + +   +
Sbjct: 391 VLGNLVGNALKFTSVGG-VSLRLTLARPGRRAPDGRVNLRFAVRDTGIGIPEDKQKTIFE 449

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII--FPLYD 812
            F Q   +   R  GTGLGL + + +     G+  + S   +G+   +   FPL  
Sbjct: 450 SFSQADETIGRRYGGTGLGLAICRRLAALMGGRLRLASAVGEGSEFVLTARFPLAP 505



 Score = 46.6 bits (109), Expect = 0.017,   Method: Composition-based stats.
 Identities = 37/293 (12%), Positives = 63/293 (21%), Gaps = 28/293 (9%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI-GDLLKRQNTWYGKTTL 149
           A G L  ++  + +  G  A  +      D            I    L       G    
Sbjct: 115 AGGRLVYVNPFMERLTGYDAATLRSKPFVDFLHPDDRRTVLGIHLRRLAGGQAPQGHAFR 174

Query: 150 WPIEGTNLYV------PIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                  L         ++    P                V      ++ +A  + L + 
Sbjct: 175 IVTADGGLRHVNAASAWMEWEGRP--------------ATVSFLADISELKAAEQALAEH 220

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
                E+    ++  +E  D  +      H R   K+ +     A               
Sbjct: 221 VHSQEEVIAARTASLRESNDRLA-AEAARHERTAQKLKTARTKLARALRAKSVFLAN--V 277

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
           S E   P        +L           L    +   E  +                   
Sbjct: 278 SHEIRTPLNVILGMADLALRPDSGGQADLTRCLEMIREAGTSLRGILGDLLDLSRVESGR 337

Query: 324 ETVDKCP----IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
             +D  P             +   A    L LT   + D  E   G +  L  
Sbjct: 338 LELDAAPFSPRQVLEATLAAHRHVAQRQGLALTGATAADVPEHVIGDAGRLAQ 390


>gi|67925453|ref|ZP_00518795.1| PAS [Crocosphaera watsonii WH 8501]
 gi|67852696|gb|EAM48113.1| PAS [Crocosphaera watsonii WH 8501]
          Length = 679

 Score =  285 bits (729), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 82/385 (21%), Positives = 167/385 (43%), Gaps = 21/385 (5%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           ++  E  +L +++    DG  +++    +L  N    ++F +  ++++ +     L    
Sbjct: 270 ELTSEKAKLDTLVSTIVDGAILLDTNLNLLLVNPTARRMFVWDSKNVIGENILEILPSEL 329

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCYSLTMHDI-- 561
              +   L +++  +   + E  +   T E+  L  RI     ++  S   S  +  +  
Sbjct: 330 TEQLQTPLKQMMEQNTSVSDELESEYQTAEDTPLQPRISPGEYRISISQPISRIVRVLLT 389

Query: 562 ------SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
                  E  +             + +  KS F++ VSHE+RTPL  I  F E + ++  
Sbjct: 390 QVFDQHRETLKGIAMTVQDITREVELNEAKSQFISNVSHELRTPLFNIKSFIETL-SEFG 448

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
             L      E+    +   + +  +VND+LD+S++ES K   H + + L + + + +   
Sbjct: 449 EDLTETERKEFLETANHETDRLTRLVNDVLDLSRLESSK-TYHLKGIDLSQLIEQTLRSY 507

Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST------ 729
           QL A +K ++++     N+P IL     + Q+  N++ N++ FTPS G I+I        
Sbjct: 508 QLNAKDKELVLKKEVEPNLPLILGHYDLLLQVMTNLVGNSLKFTPSKGMIVIRAYHFKTK 567

Query: 730 --THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
                +   V + + D+G+G+   +       F ++ N +    EGTGLGL + + ++D 
Sbjct: 568 SKQFNNKSCVRVEISDSGIGIAPEDQAAIFDRFFRVEN-RVHTLEGTGLGLSIVRNIIDK 626

Query: 788 NMGKFYIFSTPAKGTLIEIIFPLYD 812
           +  +  + S    GT       LY+
Sbjct: 627 HHSRINLISEVGIGTTFWFDLALYE 651


>gi|301163674|emb|CBW23228.1| putative two-component system histidne kinase/reponse regulator
           fusion protein [Bacteroides fragilis 638R]
          Length = 1015

 Score =  285 bits (729), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 96/524 (18%), Positives = 189/524 (36%), Gaps = 64/524 (12%)

Query: 317 EGENLTPETVDKCPIPFF----------VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
           E        +D  P+ +           V         NP F     ++  D +      
Sbjct: 378 EAMANYKNLIDNMPLLYMQEKLIVNEQGVADDLIYLNVNPHFEKHF-FRREDVVGKR--A 434

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
           S L           +  + +   +   I        I                      +
Sbjct: 435 SELFPESL---PEFLHFIQISLKENRAITFPYYFKKIDR----------FYDIVLKGAHQ 481

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI----------AIINREGIILS 476
               +    +  +    ++K+     +L   LE  +D I           + +    I  
Sbjct: 482 ENVIDIFCVDSTELHRAQQKLNATNHKLSMALE-VADIIPWKWDLLSKTILCDINKPIEL 540

Query: 477 T---NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLG 531
           +   N    +    P      K     + +     +     +++   L +  E  ++   
Sbjct: 541 SAQGNNVSEEQLAVPDSQYFSK-----IYKEDRIRVEQAYKDLIEGRLEKVKEEYRVINI 595

Query: 532 STKEEKLLSLRI-IIKKLPFSSCYSLTM----HDISEWKQEKNKLSHAKKIAEKESSHKS 586
                K+  +      +    +   +T+      I+  K+ + +L+ AK  AE+ +  KS
Sbjct: 596 RNHTHKIEWVEAQAAVETRDENGIPVTLVGSSQVITGRKKMEMELTSAKDRAEESNRLKS 655

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
            FLA +SHEIRTPL AI+GFS ++ +            EY + I+ +  L+L +++D+LD
Sbjct: 656 AFLANMSHEIRTPLNAIVGFSGILASTEEEEEK----QEYVSIIENNNALLLQLISDILD 711

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706
           +SKIE+G +   +  + L+  + +  S ++L      + +       +  +  +   + Q
Sbjct: 712 LSKIEAGTLEFQYSDIELNTELKKLESTLKLKLKSDDVQLEFVPGLPVCPVCTEKNRLSQ 771

Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSNE-EVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           + +N+++NAI FT  G    I   +     E+   V DTG G+   + E     F ++ +
Sbjct: 772 LIINLVTNAIKFTSQGS---IRFGYEHRGKELYFYVTDTGCGIPKDKQESIFGRFVKLNS 828

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
                 +GTGLGL + + +V+   G   + S   KG+      P
Sbjct: 829 F----AQGTGLGLSICRTLVEHMGGHIGVDSEEGKGSTFWFSLP 868


>gi|218247894|ref|YP_002373265.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 8801]
 gi|218168372|gb|ACK67109.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 8801]
          Length = 680

 Score =  285 bits (729), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 82/432 (18%), Positives = 173/432 (40%), Gaps = 52/432 (12%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINK--RKMEIEVMQLCSILEATSDGIAIINREGIIL 475
                +  E +       E ++    +   ++  E  +L +++    DG  +++    +L
Sbjct: 240 LPFGGELGELIFSFNEMAERLERYEEQNIEELTAEKAKLETLVSTIVDGAILLDNNLQLL 299

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL-------------- 521
             N    ++FG+   +++       L       ++  L E+                   
Sbjct: 300 LVNPRARRMFGWEGREVIGVNVLELLPTELSFELSEPLQEMARKGALEDKGVQNPSDPIS 359

Query: 522 --------RQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNK 570
                     T E     +   ++++ + +        S     ++T+ DI+        
Sbjct: 360 EPSEGQQGSSTGEFRITLTQPTQRIVRILLTQVFDQQRSTVKGIAMTVQDITR------- 412

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
                    + ++ KS F++ VSHE+RTPL  I  F E + ++    L      E+    
Sbjct: 413 -------EVELNAAKSQFISNVSHELRTPLFNIKSFIETL-SEFGEDLTEEERKEFLETA 464

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
           +   + +  +VND+LD+S++ES K+  H + V L + + + +   QL A +K + +    
Sbjct: 465 NHETDRLTRLVNDVLDLSRLESSKI-YHLDRVDLSQVIEQILRTHQLNAKDKELELSYQP 523

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN--------EEVILRVR 742
             N+  +L     + Q+  N++ N++ FT  GG+I++   H           +++ + + 
Sbjct: 524 EGNLSPVLGHYDLLLQVMTNLVGNSLKFTEPGGKIVLRAYHVRGDSSNPIHQDKIRVEIS 583

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG+G+   + E     F ++ N +    EGTGLGL + K +++ +    Y+ S    GT
Sbjct: 584 DTGIGIDPEDQEAIFSRFFRVEN-RVHTLEGTGLGLSIVKNIINKHHSHIYLVSEVGVGT 642

Query: 803 LIEIIFPLYDTS 814
                  +Y   
Sbjct: 643 TFWFDLAVYQDH 654


>gi|148240299|ref|YP_001225686.1| two-component system sensor histidine kinase NblS [Synechococcus
           sp. WH 7803]
 gi|147848838|emb|CAK24389.1| Two-component system sensor histidine kinase NblS [Synechococcus
           sp. WH 7803]
          Length = 681

 Score =  285 bits (729), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 81/446 (18%), Positives = 181/446 (40%), Gaps = 41/446 (9%)

Query: 393 CIAASARLHTIQ-WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV 451
                  L  ++     +  A   +P         +          V    N  +++   
Sbjct: 239 TRPVKELLRGVRSIADGDFRARIGLPVGGELGELLDGFNAMASQLQVYDAANIEELQAAQ 298

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
           ++  S++   +DG  +++ +G I+  N    +LF +   ++  K F   L +     ++ 
Sbjct: 299 VKQASLIATMADGAVLLDGDGRIVLANPTARRLFRWEGRNLEGKDFLNELPELLAVELHE 358

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISEWKQEKNK 570
            L  + S        + ++G         L+ + +    +    ++T+ D++        
Sbjct: 359 PLEAVSSNRTDTNELRSSIGDPARTLRFVLQAVREPSGETLKGLAVTIQDLTR------- 411

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
                    + ++ +S F++ VSHE+RTPL  I  + E + +     L +    E+    
Sbjct: 412 -------EVELNAAQSRFISNVSHELRTPLFNIKSYVETLHD-MGDLLSDEDRQEFLGIA 463

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
           +   + +  +VND+LD+S++ES + ++ F P+ +   + + +   QL A++K++ +    
Sbjct: 464 NAETDRLTRLVNDVLDLSRLESSR-SVTFAPIEVRPGLEQTLRSYQLNASDKQVELSLEA 522

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE--------------- 735
             N+P IL +   + Q+  N++ NA+ F   GGQ++I      +                
Sbjct: 523 DPNLPDILGNWDLLLQVLDNLVGNALKFNRKGGQLMIRAYTWPDSCQMTPAHPESEGPTC 582

Query: 736 -------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                   + + + DTG G++    ++  + F ++ N+      GTGLGL + + +++ +
Sbjct: 583 PLASPLPRMRVEICDTGYGISPDNQQRIFERFYRVENAVHTEV-GTGLGLSIVRGILEKH 641

Query: 789 MGKFYIFSTPAKGTLIEIIFPLYDTS 814
             +  + S P  GT      PL    
Sbjct: 642 GTEIRMASEPDVGTTFWFDLPLAQED 667



 Score = 37.3 bits (85), Expect = 9.7,   Method: Composition-based stats.
 Identities = 19/180 (10%), Positives = 52/180 (28%), Gaps = 14/180 (7%)

Query: 282 QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNL 341
                   G L +        L   +  ++                       +   G +
Sbjct: 262 GLPVGGELGELLDGFNAMASQLQVYDAANIEELQAAQVKQASLIATMADGAVLLDGDGRI 321

Query: 342 FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401
             ANP+   L +++  + +E    L+ L +   +  +  ++ V   R+D   + +S    
Sbjct: 322 VLANPTARRLFRWEGRN-LEGKDFLNELPELLAVELHEPLEAVSSNRTDTNELRSSI--- 377

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE-----VMQLCS 456
                 + +  + F+         E +    +  +D+   +     +         +L +
Sbjct: 378 -----GDPARTLRFVLQAVREPSGETLKGLAVTIQDLTREVELNAAQSRFISNVSHELRT 432


>gi|21231863|ref|NP_637780.1| histidine kinase/response regulator hybrid protein [Xanthomonas
           campestris pv. campestris str. ATCC 33913]
 gi|66768010|ref|YP_242772.1| histidine kinase/response regulator hybrid protein [Xanthomonas
           campestris pv. campestris str. 8004]
 gi|21113583|gb|AAM41704.1| histidine kinase/response regulator hybrid protein [Xanthomonas
           campestris pv. campestris str. ATCC 33913]
 gi|66573342|gb|AAY48752.1| histidine kinase/response regulator hybrid protein [Xanthomonas
           campestris pv. campestris str. 8004]
          Length = 1002

 Score =  285 bits (729), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 110/770 (14%), Positives = 227/770 (29%), Gaps = 78/770 (10%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151
             Y+  +++  P  +G    ++ G     V+              L+    +  +    P
Sbjct: 120 DAYIPSMADRHPWALGQPVSEVWGASWEQVAPPF--------RRCLQTGEGFEQRHVELP 171

Query: 152 --IEGTNLYVPIDLAALPIYSRNREFSGFRGFGI-----VHVNRVDNDPRALGKRL---D 201
               G       + +A PI   +    G    GI     V  +R+        +RL    
Sbjct: 172 MVRRGVPETTYWNFSAAPIRGEDGSIVGLFNQGIEITETVRADRLRAAEAERQRRLFEQA 231

Query: 202 KKFSHLHEIKKGHSSVEKEKY-DIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
             F+ +    +   +     Y  +   +                + +    D + +    
Sbjct: 232 PGFTAILHGPEHVFAFVNAAYLRLVGGRDMLGMSVRAGLPELEGQGFYELLDSVYSTGER 291

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF----EYLSHRNHPSLSAYFD 316
            + S   ++  Q         Q      +  +++++        +     +         
Sbjct: 292 FVAS---AVSIQLQRTGTGAEQRFVDFVYEPVKDDAGRVTGIFVQGFDTTDAQQAQQALR 348

Query: 317 EGENLTPETVDKCPIPFFVYS----------HGNLFYANPSFLLLTKYKSV---DDIEIA 363
           E E       +     F +               +   NP+F   T    V      ++ 
Sbjct: 349 ESEKRYRMLFENIDAGFCIAEVKFDAQGQAIDHRMLAVNPAFERHTGLTDVVGKWSSQLL 408

Query: 364 GGLSTLLDAPKLSDNNAIKPVML-YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
            G+             + +P+     + R      A L     +  +   +      +  
Sbjct: 409 PGIEQEWHEAYGRVARSGEPLRFEREAARLGRWYDAHLFPAGTHDNHVAMLIVDITPRRR 468

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA-V 481
              +    N    + V   + +R++          +++T   +   + +  IL+ N A  
Sbjct: 469 VEQQLRDLNETLEQRVVEALAERRL------FADFVDSTDAAVLACDMDFTILALNTASA 522

Query: 482 SKL---FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
             L   +G            +       + +  +    LS D    LE       +  + 
Sbjct: 523 EALRLAYGVSAHVGDNLLGLLDGLPEHRAQVARHWGRALSGDEFLVLE-EFGDPARALRH 581

Query: 539 LSLRIIIKKLPFSSCYSL--TMHDISEWKQEKNKLSHAKKIAEKES--SHKSDFLARVSH 594
             +R    +              D+++  Q +  L  A++   +             ++H
Sbjct: 582 YEVRFSQLRDRHGGRVGAFQVAQDVTDRVQTEASLEVAREALRQSQKMEAVGQLTGGLAH 641

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           +    LT I G  E +   R G         Y     ++      + + LL  S+    +
Sbjct: 642 DFNNLLTGISGSLE-LMQTRMGQGRFDDVECYIAVAQKAAGRAAALTHRLLAFSR----R 696

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714
             L  +P  ++  ++    L++       I + T     +   L D   ++   LN+  N
Sbjct: 697 QTLAPKPTDVNALIAGMEDLIR-RTVGPSIELTTVAEQALWPALVDPSQLENALLNLCLN 755

Query: 715 AIHFTPSGGQIIISTT-------------HTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761
           A    P G +I I T+                 E + L V DTG GM    + +  +PF 
Sbjct: 756 ARDAMPDGVRITIETSNSWLNHSATQQNEVPDGEYLSLCVSDTGTGMPEDVIARVFEPFF 815

Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
                    GEGTGLGL +       + G+  + ST  +GT + I  P +
Sbjct: 816 TTKP----IGEGTGLGLSMIYGFAQQSGGQVRVSSTVGEGTTVCIHLPRH 861



 Score = 65.8 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 40/400 (10%), Positives = 102/400 (25%), Gaps = 47/400 (11%)

Query: 90  DAHGYLKEISEELPKTIGNYA----------FKMIGMRLCDVSDILHIDPNNHIGDLLKR 139
                   ++    + +G              ++ G    ++ D ++      +      
Sbjct: 240 GPEHVFAFVNAAYLRLVGGRDMLGMSVRAGLPELEGQGFYELLDSVYSTGERFVASA--- 296

Query: 140 QNTWYGKTTLWPIEGTN-LYVPIDLAALPIYSRNREFSG--FRGFGIVHVNRVDNDPRAL 196
                  +      GT      +D    P+       +G   +GF            +  
Sbjct: 297 ------VSIQLQRTGTGAEQRFVDFVYEPVKDDAGRVTGIFVQGF----DTTDAQQAQQA 346

Query: 197 GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ---SPPPHLRMKNKVSSLTEYYAHKDDV 253
            +  +K++  L E       + + K+D   Q              + + LT+        
Sbjct: 347 LRESEKRYRMLFENIDAGFCIAEVKFDAQGQAIDHRMLAVNPAFERHTGLTDVVGKWSSQ 406

Query: 254 LKTE-KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
           L    +     +        E            + Y   L                 +  
Sbjct: 407 LLPGIEQEWHEAYGRVARSGEPLRFEREAARLGRWYDAHLFPAGTHDNHVAMLIVDITPR 466

Query: 313 AYFDEGENLTPETVDKCPI---------PFFVYSHG-NLFYANPSFLLL-TKYKSVDDIE 361
              ++      ET+++  +           FV S    +   +  F +L     S + + 
Sbjct: 467 RRVEQQLRDLNETLEQRVVEALAERRLFADFVDSTDAAVLACDMDFTILALNTASAEALR 526

Query: 362 IAGGLST--LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT---FI 416
           +A G+S     +   L D        + R     ++       ++   + + A+      
Sbjct: 527 LAYGVSAHVGDNLLGLLDGLPEHRAQVARHWGRALSGD-EFLVLEEFGDPARALRHYEVR 585

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
             +  ++    +    +  +  D    +  +E+    L  
Sbjct: 586 FSQLRDRHGGRVGAFQVAQDVTDRVQTEASLEVAREALRQ 625


>gi|262394408|ref|YP_003286262.1| hypothetical protein VEA_003637 [Vibrio sp. Ex25]
 gi|262338002|gb|ACY51797.1| hypothetical protein VEA_003637 [Vibrio sp. Ex25]
          Length = 1055

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 85/264 (32%), Positives = 135/264 (51%), Gaps = 12/264 (4%)

Query: 559 HDISEWK--QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            + S  K  Q K     AK  A + S  KS FLA +SHEIRTPL  +IG SEV+ +    
Sbjct: 371 REQSRQKLTQAKEDAEKAKDDAIEASKAKSSFLANMSHEIRTPLNGVIGISEVLSDTPLT 430

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
                   +Y + I+ S  L+L ++ND+LD SKIESG + +      + E++ +  S++ 
Sbjct: 431 AT----QRDYVDTIETSSQLLLSLINDVLDFSKIESGMLLISPHSTCVRESIYDIASIIS 486

Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSN 734
             A EK I ++ S + N P  ++ D   ++QI +N +SNA+ FT  G  ++ + T    N
Sbjct: 487 PKAKEKGIDVQVSISRNTPYHVMLDDHRIRQIIMNFMSNAVKFTEQGCVELSVITREIKN 546

Query: 735 EE--VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
            E  +   V+D+G+G+   + +K   PF Q  NS   +  GTGLGL ++  +V+   G+ 
Sbjct: 547 GEASIEFSVKDSGIGIDEQQQKKIFAPFAQEDNSTTRQFGGTGLGLAISTQLVELMGGEI 606

Query: 793 YIFSTPAKGTLIEIIF--PLYDTS 814
            + S   KG+        P+    
Sbjct: 607 QLESEKGKGSRFFFELTAPIVTQE 630


>gi|237729749|ref|ZP_04560230.1| sensory histidine kinase [Citrobacter sp. 30_2]
 gi|226908355|gb|EEH94273.1| sensory histidine kinase [Citrobacter sp. 30_2]
          Length = 918

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 85/334 (25%), Positives = 152/334 (45%), Gaps = 19/334 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +FG+ +   +  P    +               L   +   +             +++ +
Sbjct: 193 IFGWRLMRDVTGPIRNMVNTVDR-----IRRGQLDSRVEGFMLGELDMLKNGINSMAMSL 247

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 248 AAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTP 307

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+ +          N    ++ N I+RS N +L I+ND+LD SK+E+GK+ L  
Sbjct: 308 LNGVIGFTRLTLKTEL----NTTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILES 363

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P  L   + + ++L+   +++K + +  +  N++P  ++ D   ++Q+  N++ NAI F
Sbjct: 364 IPFPLRSTLDDVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKF 423

Query: 719 TPSGGQIIISTTHTS--NEEVILRV--RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           T  GG I I     +  N +V + V  RDTG+G+   +  +  + F Q   S   R  GT
Sbjct: 424 T-EGGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGT 482

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           GLGL + + +V+   G     S P +G+      
Sbjct: 483 GLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516


>gi|183219822|ref|YP_001837818.1| putative sensor protein [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|167778244|gb|ABZ96542.1| Putative sensor protein; putative membrane protein [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 921

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 67/259 (25%), Positives = 127/259 (49%), Gaps = 8/259 (3%)

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           K  +  +       EK +  KS+FLA +SHEIRTP+  ++G   +++        +    
Sbjct: 522 KSIQEIVEKRTFELEKANRVKSEFLANMSHEIRTPMNGVLGMLTLLEETNV----DIEQK 577

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           +Y +   +S   +L I+ND+LD+SK+E+ K+ +     ++ +   +   L Q    +K +
Sbjct: 578 DYLDNAKKSVLSLLTIINDILDVSKLENHKLEILPTDTNVYKLCRDIQLLFQSDVIDKNL 637

Query: 685 LIRTS--FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS-NEEVILRV 741
            +       +    IL D   ++Q+  N++SNA+ FTPSG  I ++         +   V
Sbjct: 638 KLNLDFTIEDTNLHILVDENRLRQVLNNLISNALKFTPSG-IITLAVKLDPSRNFIEFCV 696

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            DTG+G++   +++    F Q+ +++  R EG GLGL ++K +V+   G+  + S    G
Sbjct: 697 HDTGIGISEENIKRLFDRFVQLEDARTKRFEGAGLGLYISKQLVNLMGGEIKVESILNIG 756

Query: 802 TLIEIIFPLYDTSHPHDCI 820
           +  +   P +  + P   I
Sbjct: 757 STFKFTIPFHQVAIPEQSI 775


>gi|189909957|ref|YP_001961512.1| two component response regulator sensor histidine kinase/response
           regulator subunits [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167774633|gb|ABZ92934.1| Sensor and regulator protein of a two component response regulator
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
          Length = 912

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 67/259 (25%), Positives = 127/259 (49%), Gaps = 8/259 (3%)

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           K  +  +       EK +  KS+FLA +SHEIRTP+  ++G   +++        +    
Sbjct: 513 KSIQEIVEKRTFELEKANRVKSEFLANMSHEIRTPMNGVLGMLTLLEETNV----DIEQK 568

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           +Y +   +S   +L I+ND+LD+SK+E+ K+ +     ++ +   +   L Q    +K +
Sbjct: 569 DYLDNAKKSVLSLLTIINDILDVSKLENHKLEILPTDTNVYKLCRDIQLLFQSDVIDKNL 628

Query: 685 LIRTS--FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS-NEEVILRV 741
            +       +    IL D   ++Q+  N++SNA+ FTPSG  I ++         +   V
Sbjct: 629 KLNLDFTIEDTNLHILVDENRLRQVLNNLISNALKFTPSG-IITLAVKLDPSRNFIEFCV 687

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            DTG+G++   +++    F Q+ +++  R EG GLGL ++K +V+   G+  + S    G
Sbjct: 688 HDTGIGISEENIKRLFDRFVQLEDARTKRFEGAGLGLYISKQLVNLMGGEIKVESILNIG 747

Query: 802 TLIEIIFPLYDTSHPHDCI 820
           +  +   P +  + P   I
Sbjct: 748 STFKFTIPFHQVAIPEQSI 766


>gi|148559005|ref|YP_001258574.1| sensor histidine kinase [Brucella ovis ATCC 25840]
 gi|148370262|gb|ABQ60241.1| sensor histidine kinase [Brucella ovis ATCC 25840]
          Length = 609

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 92/349 (26%), Positives = 168/349 (48%), Gaps = 4/349 (1%)

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
             ++ EGI+ S +   +KL G   + +        +           L ++ +    + +
Sbjct: 211 FGLDIEGIVSSVDGETAKLLGVQPKMLEGTALIDRVHVADRVQYLSLLADLRAGMATRKV 270

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
           +            +      +        +L    +   ++  ++++  K   E E   K
Sbjct: 271 DVRLHSIE-NGNPVFRAYRFEGAGSDRAITLIGRSLEGEQKLLDEIAMLKAELESERIGK 329

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
              LA VSHE+RTPL +IIGFS+++ ++  G L + R  EYA  I +SG+ +L++VN +L
Sbjct: 330 GRLLATVSHELRTPLNSIIGFSDMLTHEIGGKLASDRQREYAGLIHQSGHYLLELVNAVL 389

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
           D S++E+G  ++  +     +AV    +++   A +K +       N +  ++AD R+V+
Sbjct: 390 DNSRLETGTYSIAPQSFVFRDAVEMCTAVMLPQAEKKGVAFCHRVGNGVGELVADRRAVQ 449

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNE---EVILRVRDTGVGMTNYELEKAMKPFGQ 762
           QI LN+ +NA+ FT SGG + I       +    +   V DTG+G+   +L++   PF +
Sbjct: 450 QILLNLATNAVKFTQSGGCVTIDAARVMADGCPMLEFSVSDTGIGIEPEDLQRIGTPFVR 509

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
             NS     EG+GLGL + K +V+ + G   + S P +GT++ I  PL 
Sbjct: 510 AGNSYTQAQEGSGLGLSVVKGLVELHQGSMQLKSRPGEGTVVMIRLPLA 558


>gi|121699726|ref|XP_001268128.1| sensor histidine kinase/response regulator Fos-1 [Aspergillus
           clavatus NRRL 1]
 gi|119396270|gb|EAW06702.1| sensor histidine kinase/response regulator Fos-1 [Aspergillus
           clavatus NRRL 1]
          Length = 697

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 98/508 (19%), Positives = 189/508 (37%), Gaps = 36/508 (7%)

Query: 316 DEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
            + +          P+P   + S   +   + S L  ++      +  +     L   P 
Sbjct: 53  QDHQLSMNRIFRHTPVPTIVLDSSLRVIEVSDSHLTFSQRSRDFMLGASIYELPLSSIPA 112

Query: 375 LSDNNAIKPVMLYRSDRTCIAAS-ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
                    + +  + R         +  I     +  ++   P          + +   
Sbjct: 113 PDIATLNGALRVAITSRAVQVIDTIHMPRIS----SYFSLRITPIFDGASLLNLVLEAHN 168

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDI 492
                   ++   +         +++   D  I +++  G I + N     + GY   DI
Sbjct: 169 VTRTHTESLHNAYI---NETYKILVDTVRDYAIFMLDARGNIATWNSGAEIIKGYKAHDI 225

Query: 493 LRKPFTVFLEQNTPSVMNH--YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
           + + F+VF              L   L       +E       K+       ++I  +  
Sbjct: 226 IGRHFSVFYSSEDRLADKPGKELEVCLRDGR---VEDEGWRYRKDGSRFWANVMITSIFQ 282

Query: 551 SS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
                 +     D++E K  + ++       E+ S  KSDFLA +SHEIRTP+  +    
Sbjct: 283 FGRHVGFVKVTRDLTERKAAEARMV---AAFEESSKMKSDFLANMSHEIRTPMNGMHLAL 339

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
            ++     G   N    EYA+ I+ S +++L ++ND+LD SK+ SG  +L+ + +S++  
Sbjct: 340 TML----TGTELNDPQREYASIIEDSMSILLQVINDVLDYSKLSSGSFSLNTDVLSVENI 395

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII 726
            +  +   +  A    + I +S   N P  +  D    +Q+  N++ NA+ FT  G  + 
Sbjct: 396 SAAVMRNCK--ALNPAVKIISSMPPNFPKMLRGDPLRYRQVIQNLVGNAMKFTEQG-TVN 452

Query: 727 I--STTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
           +  S            V   V DTG+G+    +     PF +  +S   R +GTGLGL +
Sbjct: 453 VNHSFAVDDAHSNLYTVTTEVVDTGIGVPEEAINTLFTPFTRFADSATKRYQGTGLGLSI 512

Query: 781 AKAMVDANMGKFYIFSTP-AKGTLIEII 807
            K++ +   G       P  KG++  + 
Sbjct: 513 CKSLAELMDGTVGYKPNPNGKGSVFWLT 540



 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/142 (13%), Positives = 44/142 (30%), Gaps = 10/142 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH--IDPNNHIGDLLKRQNTW 143
            + +DA G +   +       G  A  +IG              D      ++  R    
Sbjct: 198 IFMLDARGNIATWNSGAEIIKGYKAHDIIGRHFSVFYSSEDRLADKPGKELEVCLRDGRV 257

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +   +  +G+  +  + + ++  + R+         G V V R   + +A   R+   
Sbjct: 258 EDEGWRYRKDGSRFWANVMITSIFQFGRH--------VGFVKVTRDLTERKAAEARMVAA 309

Query: 204 FSHLHEIKKGHSSVEKEKYDIF 225
           F    ++K    +    +    
Sbjct: 310 FEESSKMKSDFLANMSHEIRTP 331


>gi|253989039|ref|YP_003040395.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Photorhabdus asymbiotica subsp. asymbiotica
           ATCC 43949]
 gi|253780489|emb|CAQ83651.1| sensor protein [Photorhabdus asymbiotica]
          Length = 943

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 107/485 (22%), Positives = 189/485 (38%), Gaps = 34/485 (7%)

Query: 334 FVYSHGN---LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390
           F+        +   N S   +  Y + DD ++      L       D+N    ++  R  
Sbjct: 235 FIQRQDRPISITLLNRSNQPVLHYPANDDYKLHYDDYQLEAPYFGYDDNFTDLLLKRRLM 294

Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV--DTRINKRKME 448
            +  +    L          L +              +    +    +      N  ++E
Sbjct: 295 PSSFSIIYALPLKNIFEGFKLQIISSIVLNVLSAFVIIILVYLFERKMFVPAEENAIRLE 354

Query: 449 IEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
                   I+ +   GI+I+   +G  + +N                  +   L      
Sbjct: 355 EHEQFNHKIVASAPVGISILRVSDGSNILSNELA-------------HNYLKMLTHEDRE 401

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQE 567
            + H + +  S              T     L +  +  +          + DIS   + 
Sbjct: 402 RIIHIICDRTSS--------YVDVVTSNNNHLQISFVHSRYRNEEVAICVLVDISARVRM 453

Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
           +  L      +E+ S  KS FLA VSHE+RTPL  IIG  E+++                
Sbjct: 454 EKSLQEMALASEQASYSKSMFLATVSHELRTPLYGIIGNLELLQAHSLPA----ESARLL 509

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
           + ++ S  L+L I++D+LD SKIES ++ +  +  S  E +S  IS       +K + + 
Sbjct: 510 STMNNSSALLLKIISDILDFSKIESKQLKIEPKEFSCQEVISHVISNYLPLVVKKSLSLY 569

Query: 688 TSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
                ++P  I  D   ++Q+  N+L+NAI FT +G  + I       + + +RVRDTGV
Sbjct: 570 CYIEPDVPNYIRNDPVRLQQVISNLLNNAIKFTDTG-CVAIHVVV-DKDYLYVRVRDTGV 627

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+++ EL +   PF QI  + +   +GTGLGL + + +++   G   + S P  G++  I
Sbjct: 628 GISDKELIQLFDPFFQIMPNTESSSQGTGLGLAICEKLINLMDGDIEVISQPQIGSMFSI 687

Query: 807 IFPLY 811
             PLY
Sbjct: 688 RLPLY 692


>gi|26988382|ref|NP_743807.1| multi-sensor hybrid histidine kinase [Pseudomonas putida KT2440]
 gi|24983135|gb|AAN67271.1|AE016353_11 sensor histidine kinase/response regulator GacS [Pseudomonas putida
           KT2440]
          Length = 917

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 80/244 (32%), Positives = 141/244 (57%), Gaps = 10/244 (4%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  A+K A + S  KS+FLA +SHEIRTPL  I+GF+ +++     P    R ++Y N 
Sbjct: 271 ELDMARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSEMTP----RQLDYLNT 326

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I++S + +L I+N++LD SKIE+GK+ L   P +L + + + ++++   A+ K++ + + 
Sbjct: 327 IEKSADNLLGIINEILDFSKIEAGKLVLDSIPFNLRDLIQDTLTILAPAAHAKQLELLSL 386

Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDT 744
              + P  ++ D   +KQI  N++SNAI FT  G  I++        E    + + V+DT
Sbjct: 387 IYRDTPASLVGDPLRLKQILTNLVSNAIKFTREG-TIVVRAMLEDEHEDCAQLRISVQDT 445

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G++  ++    + F Q  NS   +  GTGLGL ++K +++   G+  + STP +G+  
Sbjct: 446 GIGLSPQDVRTLFQAFSQADNSLARQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSQF 505

Query: 805 EIIF 808
            I  
Sbjct: 506 WISL 509


>gi|168029047|ref|XP_001767038.1| sensory histidine protein kinase [Physcomitrella patens subsp.
           patens]
 gi|162681780|gb|EDQ68204.1| sensory histidine protein kinase [Physcomitrella patens subsp.
           patens]
          Length = 330

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 72/232 (31%), Positives = 121/232 (52%), Gaps = 9/232 (3%)

Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639
           +    KS FLA +SHEIRTPL  II  +E+  + R  P       EY + +  S   +L 
Sbjct: 1   QADKMKSQFLANMSHEIRTPLNGIINCTELCLDTRTSP----EQQEYLDLVRFSAKHLLR 56

Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RIL 698
           I+ D+LD SKIE+GK+ +     SL + +  A+S++   AN+K + +     + +P +I+
Sbjct: 57  IITDILDFSKIEAGKLEMEDIQFSLYDQLEHAVSVLAARANKKGLELACQVDHTVPDQII 116

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQII---ISTTHTSNEEVILRVRDTGVGMTNYELEK 755
            D   + Q+ +N++ N+I FT  G  I+   + + +  N E++  VRDTG+G+   +   
Sbjct: 117 GDPGRLFQVFVNLIGNSIKFTAEGEVIVSAMVKSRNGDNIELLFSVRDTGIGIPKQKQSL 176

Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
             + F Q+ +S      GTGLGL ++  +  A  G  ++ S   KG+     
Sbjct: 177 LFQAFSQVDSSTTRLYGGTGLGLVISSKLAAAMGGTMWVESE-GKGSTFSFT 227


>gi|254467598|ref|ZP_05081007.1| periplasmic sensor hybrid histidine kinase [Rhodobacterales
           bacterium Y4I]
 gi|206684346|gb|EDZ44830.1| periplasmic sensor hybrid histidine kinase [Rhodobacterales
           bacterium Y4I]
          Length = 761

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 82/256 (32%), Positives = 138/256 (53%), Gaps = 8/256 (3%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E  + +  L  A++ A+  +  KS+FLA +SHEIRTP+  +IG +E+++  R     +  
Sbjct: 218 ERDEREFALEQAREAADIANRAKSEFLANMSHEIRTPMNGVIGMAELLQETRL----DDD 273

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
              YA  I +SG+ +L I+ND+L+ SKIE+GK+ L   P +L  AV + ++L+   A EK
Sbjct: 274 QRMYAETIGKSGSALLTIINDILNFSKIEAGKLELSCAPFNLQTAVEDVVTLLSPKAAEK 333

Query: 683 RILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEE--VI 738
            + +   +   +P +   D   ++Q+  NI  NA+ FT  G   I ++ T   +    V 
Sbjct: 334 GVEVTMRYDPALPELFEGDAGRIRQVITNIAGNAVKFTCEGYVFIEVTGTAQPDGGLLVR 393

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           L+V DTG+G+    + +  + F Q  N+     EGTGLGL ++  +++   G   + S P
Sbjct: 394 LQVTDTGIGIAQDRIGRIFRAFEQADNAATRNFEGTGLGLAISSRLLELMGGSVEVQSVP 453

Query: 799 AKGTLIEIIFPLYDTS 814
            KG++  I  PL  + 
Sbjct: 454 GKGSVFTIQIPLRASE 469


>gi|170025130|ref|YP_001721635.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Yersinia pseudotuberculosis YPIII]
 gi|169751664|gb|ACA69182.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Yersinia pseudotuberculosis YPIII]
          Length = 604

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 83/376 (22%), Positives = 163/376 (43%), Gaps = 28/376 (7%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           ++++R+++        I+     G+   N E +I   N    K+FG   + +  +     
Sbjct: 234 QLSRRQLQDSKAISTEIINNLPIGLITTNEEQLISVVNHTAEKIFGISKDILTGQNIHQA 293

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL---- 556
           L      ++        S   +  +E       KE  ++ L I +  +   +   L    
Sbjct: 294 LPPEWNLLVK------KSQRHQPVIEHEFDYKLKEGLIIPLSISVANIVNHNGSFLGNIF 347

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
              D+ E +Q + ++   +K+A        +  A V+HEIR PL++I GF++    +   
Sbjct: 348 IFRDMREVRQLQEEIRRKEKLA-----AIGNLAAGVAHEIRNPLSSIKGFAKYF--EGHS 400

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
           P G+    E A  + +  + +   V +LL + +      +L  + V+++E ++ ++ L++
Sbjct: 401 PQGSEEQ-ELAKVMIKEVDRLNRAVTELLGLVRPS----DLRIQLVNINEIIAHSLHLIR 455

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
             A+ K+I I+     N+PR+  D     Q  LN+  NAI      G + I+       +
Sbjct: 456 QDADSKKITIQFISNENLPRVEIDPDRFTQALLNLYLNAIQAMGRAGTLEIALALVEESK 515

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           + + V DTG G+   +LE    P+     S      GTGLGL + + +++ + G+  + S
Sbjct: 516 LRISVIDTGKGIRAEDLENIFNPYFTTKAS------GTGLGLAIVQKVIEEHQGRITVTS 569

Query: 797 TPAKGTLIEIIFPLYD 812
            P  GT  ++  PL  
Sbjct: 570 HPQSGTRFDMTIPLVQ 585


>gi|149927071|ref|ZP_01915329.1| phosphate regulon sensor protein [Limnobacter sp. MED105]
 gi|149824292|gb|EDM83512.1| phosphate regulon sensor protein [Limnobacter sp. MED105]
          Length = 452

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 81/374 (21%), Positives = 151/374 (40%), Gaps = 35/374 (9%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +  ++ +   ++   +  +A  DG+  ++ EG I   N       G  +   + +P    
Sbjct: 87  QRQQQALTNALVSFRTAAQALPDGVVTLDSEGHISWCNDTAQDHLGLKLGSDIGQPLINL 146

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
           +     S               ++ E+  + +    +   L + +          +   D
Sbjct: 147 VRNPNFSKYI----------RSRSWEQPLIMTAPRSRSKVLSVQLVSYGDQQ-MLVLSRD 195

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           +++ ++ +                + DF+A VSHE++TPLT + GF E  ++    PL  
Sbjct: 196 VTQVEKLE--------------RMRRDFIANVSHELKTPLTVLSGFLETFRD---LPLSK 238

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF-EPVSLDEAVSEAISLVQLYA 679
            +  EY N +    N + ++V DLL +S +ES        EPV L     +     Q  +
Sbjct: 239 EQQTEYLNLMYTQANRMQNLVEDLLALSALESSPNAGEGGEPVDLSGIAQKTGDEAQQLS 298

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---- 735
             K   I       +     +   +     NI++NA+ +TP  G I I+   + NE    
Sbjct: 299 AGKH-NISVDVEKGLMG-FGNSAEIFSAFSNIVTNAVRYTPEKGNITITLRRSENEIGKA 356

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
                VRDTG+G++   + +  + F ++  S+     GTGLGL + K +V  + G+  I 
Sbjct: 357 CAAFVVRDTGIGISAEHIPRLTERFYRVDRSRSRESGGTGLGLAIVKHVVQRHDGELDIQ 416

Query: 796 STPAKGTLIEIIFP 809
           S P  G+   I+ P
Sbjct: 417 SRPNAGSTFTILMP 430


>gi|239813727|ref|YP_002942637.1| PAS/PAC sensor hybrid histidine kinase [Variovorax paradoxus S110]
 gi|239800304|gb|ACS17371.1| PAS/PAC sensor hybrid histidine kinase [Variovorax paradoxus S110]
          Length = 641

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 101/496 (20%), Positives = 181/496 (36%), Gaps = 47/496 (9%)

Query: 332 PFFVYSHGNLFY-ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390
              V   G +    N     L  Y + D +      S       +  N   + +   R D
Sbjct: 32  AIIVLDPGGIVISWNEGARQLKGYDAPDVLGR--HFSLFYPTELIEQNRPEQALETARRD 89

Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450
                   RL +           + +         E    + I  +  + R     + + 
Sbjct: 90  GRLEEEGWRLRS----DGTRFWASVVITRIPGAGGEVRGFSLITRDRSEIRRQDEMLRMS 145

Query: 451 VMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV- 508
             +   ++E   D  I +++  G ++S N    K  GY   +I+ + F+ F      +  
Sbjct: 146 EERFRLLVEGVKDYAIFMLDPGGHVVSWNLGAQKNKGYEASEIIGQHFSRFYPPEVAASG 205

Query: 509 -MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISE 563
                L   L        E       K+       ++I  L  +      ++    D++E
Sbjct: 206 WPQQALRNALRDGR---FEDEGWRIRKDGSRFWASVVITALHDATGRHRGFAKVTRDLTE 262

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            ++            E E    ++FLA + HE+R PL  I    E++K ++         
Sbjct: 263 RRRV--------TALEDEGRRVTNFLAMLGHELRNPLAPISNALELLKREKAESAALVHT 314

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            +    I R    +  +V+DLLD+ +I SGK+ L  +PV L +A++EAI  V+   + K 
Sbjct: 315 RD---IIGRQLRQITRLVDDLLDVGRITSGKIQLENKPVRLRDAIAEAIEAVRPLIDGKS 371

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
             +     +  P I  D   V QI  N++ NA  FT +GG I +S + T+  +  + VRD
Sbjct: 372 QTLHLQTQDADPWIAGDSARVVQIVSNLVHNAAKFTGNGGNIHVSLSRTA-ADADISVRD 430

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRG--------EGTGLGLPLAKAMVDANMGKFYIF 795
            G G+   +L++    F Q   +                       + +   + G+   F
Sbjct: 431 DGPGIPPQDLQRIFDLFVQGEQNLARTQGGLGLGLSL--------VQQLTTLHGGRVSAF 482

Query: 796 ST--PAKGTLIEIIFP 809
           ST  P +G+   + FP
Sbjct: 483 STGRPGEGSEFVVQFP 498



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/249 (10%), Positives = 66/249 (26%), Gaps = 8/249 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D  G +   +E   +  G  A  ++G           I+ N     L   +     +  
Sbjct: 36  LDPGGIVISWNEGARQLKGYDAPDVLGRHFSLFYPTELIEQNRPEQALETARRDGRLEEE 95

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
            W +          +    I     E  GF    I            + +  +++F  L 
Sbjct: 96  GWRLRSDGTRFWASVVITRIPGAGGEVRGFS--LITRDRSEIRRQDEMLRMSEERFRLLV 153

Query: 209 EIKKGHS-SVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEK--YPLLT 263
           E  K ++  +      + S        +    +++        +  +V  +      L  
Sbjct: 154 EGVKDYAIFMLDPGGHVVSWNLGAQKNKGYEASEIIGQHFSRFYPPEVAASGWPQQALRN 213

Query: 264 SEESSLPEQEDFH-TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
           +      E E +    + +++        L + +     +       +        E+  
Sbjct: 214 ALRDGRFEDEGWRIRKDGSRFWASVVITALHDATGRHRGFAKVTRDLTERRRVTALEDEG 273

Query: 323 PETVDKCPI 331
               +   +
Sbjct: 274 RRVTNFLAM 282



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/153 (11%), Positives = 46/153 (30%), Gaps = 7/153 (4%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID---PNNHIGDLLKRQNT 142
            + +D  G++   +    K  G  A ++IG                P   + + L+    
Sbjct: 161 IFMLDPGGHVVSWNLGAQKNKGYEASEIIGQHFSRFYPPEVAASGWPQQALRNALRDGR- 219

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFG-IVHVNRVDNDPRALGKRLD 201
           +  +      +G+  +  + + AL  +       GF      +   R        G+R+ 
Sbjct: 220 FEDEGWRIRKDGSRFWASVVITAL--HDATGRHRGFAKVTRDLTERRRVTALEDEGRRVT 277

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL 234
              + L    +   +      ++  ++      
Sbjct: 278 NFLAMLGHELRNPLAPISNALELLKREKAESAA 310


>gi|27804857|gb|AAO22894.1| sensor protein [Myxococcus xanthus]
          Length = 638

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 102/652 (15%), Positives = 219/652 (33%), Gaps = 44/652 (6%)

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247
                 R  G    + F  L E     +++      + +             VS      
Sbjct: 3   TETRAVRIAGGPAPEFFQALFEALDAPAAMCDPALRLVAVNDAFRRFCADQHVSVEEVAR 62

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
                 +  +           LP      +   +    +       + ++      +   
Sbjct: 63  TLSGASVPADGASCDVELLPDLPGVVLTLSRRGDVVAVRARNEPELSRNRLVVAERALLE 122

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
                    +      E   +  +   V       +   SF +         +       
Sbjct: 123 QARTEGVLLDLGRSVAEAGGEEELVAAVARGVKELFPGRSFCIRITDSRTGGLTSLYAEG 182

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAAS-----ARLHTIQWNRENSLAMTFIPFEKAN 422
            L +          + V     DR  +          +  +  +  + ++   +   +  
Sbjct: 183 RLKEGAHEPLVLMERAVEKTSLDRASLPVDRVAVLGEVPLLFQDSTHGVSAPLVASGQLF 242

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIE-----------------VMQLCSILEATSDGI 465
                        +         ++  +                    L  +LE  +  I
Sbjct: 243 GAINMEYPADFVSDVPHDERVLLQLANQVAVAVKNAKLIDELTFVRKYLEDLLEKANALI 302

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
            + NR+  ++  N+A+S L G+  E++L + F   + ++    +N  +   +  +   + 
Sbjct: 303 LVANRDKQVVVFNQALSALTGFGKEEVLGRDFFWLIPESEHLRLNQLIAAAIRGEPVNSF 362

Query: 526 EKITLGSTKEEKLLSLRII----IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE 581
              T   T     + +       + +            DI+  K+ + ++ HA+K+A   
Sbjct: 363 --ETRLLTSSGAEVRVSFATSSKLSQHGEVEGVIAIGQDITVVKELEKRIIHAEKLA--- 417

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ-RFGPLGNPRYIEYANYIDRSGNLVLDI 640
                   A V HEI  P+TA+  +++ +  + R  P  NP   E    I  S + +L  
Sbjct: 418 --SIGQLAASVVHEINNPMTAVATYADALLQRSRMTPGANPADQEKLRKILESSHRILRF 475

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILAD 700
             DL+  ++    +     E V L+  V  A+   +    + R+ I+  +   +P + A 
Sbjct: 476 TRDLVSYARPAQDR----PERVQLNAIVDMAVGFCEHVVAQARVTIQREY-IELPPLSAV 530

Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760
             ++ Q+ +N+++NA H  P GG +I++T     ++ +++VRDTG G+    L++  +PF
Sbjct: 531 RANLVQVFVNLITNACHAMPPGGSVILATG-RDGQDAVVKVRDTGTGIEPKHLQRIFEPF 589

Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
                     G GTGLGL + + +V+ + G+  + ST  +GT   +  PL  
Sbjct: 590 FTTKP----EGRGTGLGLSICQGIVENHGGRLTVESTMGEGTTFIVRLPLQQ 637



 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 45/399 (11%), Positives = 101/399 (25%), Gaps = 44/399 (11%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKM--IGMRLCDVSDILH---------IDPNNHIGDLLK 138
           D    L  +++   +   +    +  +   L   S              D    +  L +
Sbjct: 34  DPALRLVAVNDAFRRFCADQHVSVEEVARTLSGASVPADGASCDVELLPDLPGVVLTLSR 93

Query: 139 RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
           R +           E       + +A   +  + R   G     +            L  
Sbjct: 94  RGDVVA---VRARNEPELSRNRLVVAERALLEQART-EGVL-LDLGRSVAEAGGEEELVA 148

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
            + +    L   +     +   +    +       L+       +    A +   L    
Sbjct: 149 AVARGVKELFPGRSFCIRITDSRTGGLTSLYAEGRLKEGAHEPLVLMERAVEKTSLDRAS 208

Query: 259 YP---LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
            P   +    E  L  Q+  H ++       Q FG +       F      +   L    
Sbjct: 209 LPVDRVAVLGEVPLLFQDSTHGVSAPLVASGQLFGAINMEYPADFVSDVPHDERVLLQLA 268

Query: 316 DE----------------GENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVD 358
           ++                      + ++K      V +    +   N +   LT +   +
Sbjct: 269 NQVAVAVKNAKLIDELTFVRKYLEDLLEKANALILVANRDKQVVVFNQALSALTGFGKEE 328

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
            +    G       P+       + +          +   RL T        + ++F   
Sbjct: 329 VL----GRDFFWLIPESEHLRLNQLIAAAIRGEPVNSFETRLLTSS---GAEVRVSFATS 381

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
            K +Q  E      I  +    +  ++++ I   +L SI
Sbjct: 382 SKLSQHGEVEGVIAIGQDITVVKELEKRI-IHAEKLASI 419



 Score = 45.0 bits (105), Expect = 0.048,   Method: Composition-based stats.
 Identities = 22/243 (9%), Positives = 64/243 (26%), Gaps = 12/243 (4%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMR-LCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +    +   ++ L    G    +++G      + +  H+  N  I   ++ +     +T 
Sbjct: 306 NRDKQVVVFNQALSALTGFGKEEVLGRDFFWLIPESEHLRLNQLIAAAIRGEPVNSFETR 365

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           L    G  + V    ++    S++ E  G    G      V  +        +K  S   
Sbjct: 366 LLTSSGAEVRVSFATSSK--LSQHGEVEGVIAIG--QDITVVKELEKRIIHAEKLASIGQ 421

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
                   +      + +                +T      D     +     +     
Sbjct: 422 LAASVVHEINNPMTAVATYADALLQRS------RMTPGANPADQEKLRKILE-SSHRILR 474

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
                  +        ++     + + +    E++  +   ++   + E   L+    + 
Sbjct: 475 FTRDLVSYARPAQDRPERVQLNAIVDMAVGFCEHVVAQARVTIQREYIELPPLSAVRANL 534

Query: 329 CPI 331
             +
Sbjct: 535 VQV 537


>gi|163848410|ref|YP_001636454.1| histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|163669699|gb|ABY36065.1| Histidine kinase [Chloroflexus aurantiacus J-10-fl]
          Length = 403

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 82/427 (19%), Positives = 176/427 (41%), Gaps = 47/427 (11%)

Query: 403 IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
            + ++++  ++   P     Q    +     E    D+ +    +  + + L ++  A  
Sbjct: 2   YRRHQKSHSSLVDHPSPPGTQEHSMISSARSETITSDSHLALLAIHRQPLFL-ALAAAID 60

Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522
            G+ +IN E  I+  N     L             T+  +     + +  L++       
Sbjct: 61  TGVIVINTERRIVFHNDTALHLLATQSPMQDSGLITLLRDHQADQLASDVLSD------- 113

Query: 523 QTLEKITLGS-TKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAE 579
               +          + L L  +  +          +T+ D+++    +           
Sbjct: 114 -GEHRELTIRPIATGRTLHLHYVPLREGGGKPVGALITIRDLTQISMLE----------- 161

Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639
                + D +A VSHE+RTPL ++    E +++                 + +  + V  
Sbjct: 162 ---RARRDLVANVSHELRTPLASLKLLVETVQS----APPPDIASRMLEQMAQEIDAVTQ 214

Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA 699
           +V++L ++S++ESG+++L  EP+ +   +  A+  ++  A+ K+ +I    A ++P  L 
Sbjct: 215 LVDELHELSRLESGRVSLKLEPLPVWPVIERAVERIRPQADRKQQVICVEPAADLPLALM 274

Query: 700 DLRSVKQIALNILSNAIHFTPSGGQIIISTT---HTSNE--------------EVILRVR 742
           D   + Q+ LN+L NA+ FTP GG I ++        +E               +++RV 
Sbjct: 275 DGDRIGQVLLNLLHNAVKFTPEGGTITVAAEVLTLRDDEQPSRPDRPPHPAGTWLLIRVS 334

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG+G+ N ++++  + F ++  ++     GTGLGL +AK +V+ + G+ +  S    G+
Sbjct: 335 DTGIGIPNRDIQRIFERFYKVDRARTRHAGGTGLGLAIAKHLVEGHGGRIWASSQEGHGS 394

Query: 803 LIEIIFP 809
                 P
Sbjct: 395 TFWFTLP 401


>gi|290476633|ref|YP_003469538.1| Sensor protein BarA [Xenorhabdus bovienii SS-2004]
 gi|289175971|emb|CBJ82774.1| Sensor protein BarA [Xenorhabdus bovienii SS-2004]
          Length = 791

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 80/250 (32%), Positives = 129/250 (51%), Gaps = 8/250 (3%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           + + +  +L+ AKK A++    K++FLA +SHE+RTPL  +IGF+  +           +
Sbjct: 278 QLEIQNVELTLAKKRAQEAVKIKTEFLANMSHELRTPLNGVIGFTRQMLKTPITS----Q 333

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             EY   I+RS N +L I+ND+LD S++ES K+ L   P  L + V+E I L+   A+EK
Sbjct: 334 QAEYLYVIERSANNLLKIINDILDFSRLESNKLVLDQVPFLLRDTVNEVIELLTPVASEK 393

Query: 683 RILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQI-IISTTHTSNEEVIL- 739
            + ++    + +P ++  D   ++QI  N++ NAI FT  G  I  +      +  V + 
Sbjct: 394 NLPLQHRIDDKLPNLMIGDPIRLQQILTNLIGNAIKFTDKGSVILEVRLRQQQHHLVQID 453

Query: 740 -RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
             + DTG+G+         + F Q   S      GTGLGL + K +V+   G+    S P
Sbjct: 454 FTITDTGIGIKPEYRPILFQAFNQADASITRHYGGTGLGLSITKRLVNEMKGEIDFISEP 513

Query: 799 AKGTLIEIIF 808
           AKGT+     
Sbjct: 514 AKGTVFYFDL 523


>gi|317494185|ref|ZP_07952601.1| hsp90-like protein [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917958|gb|EFV39301.1| hsp90-like protein [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 593

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 93/369 (25%), Positives = 172/369 (46%), Gaps = 28/369 (7%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            ++        I+E+ +DG+  ++  G I+  N A   + GY + ++    +        
Sbjct: 241 ALKEAKTLNELIIESAADGMISVDVNGRIIMCNPAAVNITGYSLVELFDHDYAAIF---E 297

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDI 561
                  L + L   +            KE ++L ++    +L  S        +   D+
Sbjct: 298 KDEYRSPLLDTLKHGVEHV-GVEVSYPAKE-RVLQIKASSSQLRNSDDEIIGALVIFTDL 355

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           +E K+ +  ++ A+++A        + +A V+HE+R PLTAI GF + +K        +P
Sbjct: 356 TEQKEMQRHIAQAERLAT-----LGELMAGVAHEVRNPLTAISGFIQYLKQGE----SDP 406

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
           + IEY + I      +  ++  LLD ++ +S      F+ VS+++ + E + LVQ     
Sbjct: 407 QRIEYIDIIIHEVRSINKVIQQLLDFARPQSRL----FQEVSINQIIKETLVLVQTNGVN 462

Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
            RI    S    +P +  D   +KQ+ LN+L NA+   P+ G+I I TT  + E++ + +
Sbjct: 463 SRIDFSISLDETLPALEVDASGLKQVFLNLLINAVQSIPAKGEISIETTRLTMEKIQITI 522

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
           +DTG GM++   +K   PF    +      +GTGLGL + + +++ + G   I S   +G
Sbjct: 523 KDTGGGMSDDVQKKIFMPFFTTKS------QGTGLGLSIVQRIINDHSGDVIIESKIHQG 576

Query: 802 TLIEIIFPL 810
           T + II PL
Sbjct: 577 TKVMIILPL 585



 Score = 48.9 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 37/334 (11%), Positives = 99/334 (29%), Gaps = 22/334 (6%)

Query: 132 HIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN 191
            +  +L  +      T  +P  G   Y   D+ A+  Y+    +    G  I   +    
Sbjct: 65  ALNKVLADRT--EKITRAFPNVGAGYYHR-DVDAIITYAPQALYGSKVGVSIAQDHPGRT 121

Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD 251
             ++    +        ++      + ++   I    +      +  +  ++        
Sbjct: 122 VMKSGKAEIKSGSQVRGDVLNAMIPIRRKGEVIGYIWANEFSNDIDKQAWAMDASIISVI 181

Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG--TLQNNSKESFEYLSHRNHP 309
            +       L+ S    L    D     L++           L+   +   + ++H    
Sbjct: 182 SIGLISSLFLILSFSRRLSRDVDLIKERLSKLPFDLNTKMPPLKGEMEGIADKINH---- 237

Query: 310 SLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
            L+    E + L    ++        V  +G +   NP+ + +T Y  V+  +     + 
Sbjct: 238 -LAYALKEAKTLNELIIESAADGMISVDVNGRIIMCNPAAVNITGYSLVELFDH--DYAA 294

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
           + +  +                   ++  A+        E  L +     +  N   E +
Sbjct: 295 IFEKDEYRSPLLDTLKHGVEHVGVEVSYPAK--------ERVLQIKASSSQLRNSDDEII 346

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
               I  +  + +  +R +  +  +L ++ E  +
Sbjct: 347 GALVIFTDLTEQKEMQRHI-AQAERLATLGELMA 379



 Score = 41.9 bits (97), Expect = 0.44,   Method: Composition-based stats.
 Identities = 26/250 (10%), Positives = 58/250 (23%), Gaps = 17/250 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTWYGKT 147
           +D +G +   +       G    ++      D + I   D     + D LK      G  
Sbjct: 263 VDVNGRIIMCNPAAVNITGYSLVELFDH---DYAAIFEKDEYRSPLLDTLKHGVEHVGVE 319

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN------DPRALGKRLD 201
             +P +     + I  ++  + + + E  G     I                      L 
Sbjct: 320 VSYPAKER--VLQIKASSSQLRNSDDEIIGA--LVIFTDLTEQKEMQRHIAQAERLATLG 375

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
           +  + +    +   +          Q    P      +   +  +     + +  +    
Sbjct: 376 ELMAGVAHEVRNPLTAISGFIQYLKQGESDPQRI---EYIDIIIHEVRSINKVIQQLLDF 432

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
              +     E      I       +      + +   S +          S       NL
Sbjct: 433 ARPQSRLFQEVSINQIIKETLVLVQTNGVNSRIDFSISLDETLPALEVDASGLKQVFLNL 492

Query: 322 TPETVDKCPI 331
               V   P 
Sbjct: 493 LINAVQSIPA 502


>gi|218258479|ref|ZP_03474846.1| hypothetical protein PRABACTJOHN_00501 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225451|gb|EEC98101.1| hypothetical protein PRABACTJOHN_00501 [Parabacteroides johnsonii
           DSM 18315]
          Length = 720

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 108/532 (20%), Positives = 202/532 (37%), Gaps = 54/532 (10%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
                   +      +  +  PI   +Y   GNL   N +   +        + +     
Sbjct: 209 EESRKRISKLSTKFQQFFNNLPIGVELYDAEGNLIDINDADTKIFGSSREQLLGVN---- 264

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL--------AMTFIPFE 419
            L   P + +    +   + +        +   + I+ +              +      
Sbjct: 265 -LFKNPAVPEKILNQ---IKKKKAFSFPLAYDFNCIR-DSRYYHSNISDETKYLMVKGIG 319

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
             ++   ++    I  ++ + +  + + +  +  L ++L +    IA  + E   L  N 
Sbjct: 320 LNDREFGHIGYLLIISDETEKQAKEEQTQNNLAILKAVLLSGHSLIAEYDIEKKELFVNP 379

Query: 480 AVSK------LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
            +++      LF Y   +          +    +   + L +++         +      
Sbjct: 380 LLNETPEDNKLFNYLRNN-KYMTIEGVQQIIRSTDNVNLLFQVIGGKQDHCSFECRTAIE 438

Query: 534 KEEKLLSLRIIIKKLPFSSC---YSLTMHDISEWKQEKNKLSHAK----------KIAEK 580
            E   + +     K   S         + +I+E K  + KL HA+          +   +
Sbjct: 439 NETIWIRINAQAYKTKGSRRQNKMICHVTNITEEKLLEEKLHHAEYETRQSELEIQKVRE 498

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
               KS FLA +SHEIRTPL AIIGFS ++              E+   I+++ +L+L +
Sbjct: 499 ADKLKSAFLANMSHEIRTPLNAIIGFSNILAETDDKEEK----EEFVKIINKNSDLLLRL 554

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA- 699
           + D+LD SKIESG ++      SL E   E   +  L   EK + +   F   +P IL  
Sbjct: 555 ITDILDFSKIESGILDYSLADTSLKEIFHEQYQVHALKMPEK-VSLICDFDA-LPDILIH 612

Query: 700 -DLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-SNEEVILRVRDTGVGMTNYELEKAM 757
            D + V Q+  N++SNA  FT  G    IS ++      V++ V DTG+G++    +   
Sbjct: 613 TDPKRVTQVISNLISNAAKFTEEGS---ISFSYRIVEGYVLIEVIDTGIGISLQHQQSIF 669

Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             F +I + +    +GTGLGL + K +++A  G   + S P +G       P
Sbjct: 670 DRFVKINSFK----QGTGLGLTICKTIIEALNGTIGVDSRPGEGARFWFTLP 717


>gi|153811915|ref|ZP_01964583.1| hypothetical protein RUMOBE_02308 [Ruminococcus obeum ATCC 29174]
 gi|149832049|gb|EDM87134.1| hypothetical protein RUMOBE_02308 [Ruminococcus obeum ATCC 29174]
          Length = 865

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 90/467 (19%), Positives = 178/467 (38%), Gaps = 37/467 (7%)

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
           +        +   T +A   R   I  N E              +  ++        +  
Sbjct: 138 DRGYIAERLKGLETELALECR---ITLNGEERW---VRNVVIRGEIEDSEYAMIFLRDIT 191

Query: 439 DTRINKRK---MEIEVMQLCSILEATS---DGIAIIN-REGIILSTNRAVSKLFG----Y 487
           + ++   +   M  +   +  ++++     D   + +         N     ++     Y
Sbjct: 192 EAKVESARHLQMAADNASMELLIQSIVRLVDRFVVCDLENDRYEFYNLNGQMIYKPLGFY 251

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
               +        LE      +      I      +         + +EK   +      
Sbjct: 252 HDFQMQVLEKYKTLEPLDALDILTAPENIRKNLKSENDIYKFEYCSLDEKTYKI-ASYIP 310

Query: 548 LPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAE----KESSHKSDFLARVSHEIRTP 599
           L + +       L   D+++ K+ + +   A K A       +  K++FL+ +SH+IRTP
Sbjct: 311 LEWKNGKLEKVLLASMDVTQEKKAEIESRQALKEAYWSAENANRAKTEFLSNMSHDIRTP 370

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           + AI+G + +            R IE  + I +S   +L ++N++LD+++IESGKM L  
Sbjct: 371 MNAIVGLTAIAGANI---ESQDRVIECLSKITKSSRHLLGLINEVLDMARIESGKMTLAQ 427

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHF 718
           E  +L + V   I+L +   +E +        +     +  D   ++Q+ +N++SNAI +
Sbjct: 428 EDFNLPDLVDNLITLTKPVLDEHKHNFDVRINHIEHEDVCGDSLRIQQVFVNLMSNAIKY 487

Query: 719 TPSGGQIIISTTHTSNEE-----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
           T  GG I  S     N           + D G+GM+    +    PF +  + +  + +G
Sbjct: 488 TLDGGNITFSIEEKPNGFSELGCYEFTIEDNGIGMSPEFQKIMFDPFSRADDHRTTKVQG 547

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGT--LIEIIFPLYDTSHPHD 818
           TGLG+ +++ +V+   G   + ST  KGT   + I   L +     D
Sbjct: 548 TGLGMAISRNIVNLMNGNIKVDSTLHKGTKITVTIYLELQEKEKEQD 594


>gi|153801551|ref|ZP_01956137.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae MZO-3]
 gi|124122878|gb|EAY41621.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae MZO-3]
          Length = 1146

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 89/382 (23%), Positives = 159/382 (41%), Gaps = 24/382 (6%)

Query: 441 RINKRKMEIEVMQLC---SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP- 496
           R +++  ++   QL     +L+A    I I + +  ++ TN A  K++    E    +P 
Sbjct: 481 RSSEQVAKLSTEQLRWLTELLDAIPSMIFISDEKDEVVLTNAAYRKIYHTCCEKGCVQPQ 540

Query: 497 --FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554
              +     +        + +    +         +             I   +     Y
Sbjct: 541 PECSFLALPDQHEAEFSIIIQAPKSNCSIGEHYFHVTRRA---------ISHPINQRKYY 591

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
               +DI+E K+ +  L  + + A +    ++ FLA VSHE+RTP+ A++G  E++ ++ 
Sbjct: 592 LTLFNDITELKETEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGLMEILASR- 650

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
              L +            S   +   VND+LD SKIE+ ++ L     +L + +   +  
Sbjct: 651 ---LKSSESQLLLTNAISSAERLKLHVNDILDFSKIEAQQLQLDIGLYNLADELGPLLRG 707

Query: 675 VQLYANEKRILIRTSFANN-IPRILADLRSVKQIALNILSNAIHFTPSGGQI-IISTTHT 732
            +  A  K I     ++ N +     D     QI  N+LSNAI FT  G  +  I     
Sbjct: 708 FEASAQLKEIEFDVIWSPNSLLLANFDALRFNQIVTNLLSNAIKFTDQGRVVFKIDVAPE 767

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
               + + V DTG GMT  ++E    PF Q  ++   R  GTGLG+ +   +++   GK 
Sbjct: 768 ---MLTIVVEDTGCGMTQTQIESLFVPFAQADSTITRRFGGTGLGMSIVANLIELMNGKI 824

Query: 793 YIFSTPAKGTLIEIIFPLYDTS 814
            + S   +GT I++  PL   +
Sbjct: 825 EVKSEFEQGTQIQVNLPLVTQT 846


>gi|147676477|ref|YP_001210692.1| hypothetical protein PTH_0142 [Pelotomaculum thermopropionicum SI]
 gi|146272574|dbj|BAF58323.1| hypothetical protein [Pelotomaculum thermopropionicum SI]
          Length = 2071

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 77/252 (30%), Positives = 126/252 (50%), Gaps = 10/252 (3%)

Query: 563  EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
            E ++    L  AK+ A+  +  K  FLA +SHEIRT L  +IG +E++ +       N  
Sbjct: 1532 ELQETNELLKQAKEAADAANRAKGKFLAVMSHEIRTTLNGLIGMAELLLDTPL----NGE 1587

Query: 623  YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
              EY + +    + +L +VNDLLD S+IE G++ L     +    V ++++LV+  A +K
Sbjct: 1588 QQEYVSAVRECADSLLSVVNDLLDFSRIEEGRLVLETVSFNPASLVEKSVALVEPGARQK 1647

Query: 683  RILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EV 737
             +L++   A ++P  +  D   ++Q+ LN+L NA+ FT  G +I +S      E     V
Sbjct: 1648 SLLLKYHIAPDVPGTLQGDPIRLRQVLLNLLGNAVKFTERG-EISLSAFVEGREPDSLTV 1706

Query: 738  ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
               V+DTG+G+         +PF Q   S   R  G GLGL + K +V+   G+    S 
Sbjct: 1707 RFEVQDTGIGIPEEARSMLFRPFTQAGPSSAGRYGGAGLGLSICKRLVELMGGRIGFESE 1766

Query: 798  PAKGTLIEIIFP 809
              +G+      P
Sbjct: 1767 EGRGSTFWFSVP 1778


>gi|256044286|ref|ZP_05447190.1| integral membrane sensor signal transduction histidine kinase
           [Brucella melitensis bv. 1 str. Rev.1]
 gi|256113119|ref|ZP_05453996.1| integral membrane sensor signal transduction histidine kinase
           [Brucella melitensis bv. 3 str. Ether]
 gi|260563640|ref|ZP_05834126.1| sensor histidine kinase [Brucella melitensis bv. 1 str. 16M]
 gi|260153656|gb|EEW88748.1| sensor histidine kinase [Brucella melitensis bv. 1 str. 16M]
          Length = 609

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 92/349 (26%), Positives = 168/349 (48%), Gaps = 4/349 (1%)

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
             ++ EGI+ S +   +KL G   + +        +           L ++ +    + +
Sbjct: 211 FGLDIEGIVSSVDGETAKLLGVQPKMLEGTALIDRVHVADRVQYLSLLADLRAGMATRKV 270

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
           +            +      +        +L    +   ++  ++++  K   E E   K
Sbjct: 271 DVRLRSIE-NGNPVFRAYRFEGAGSDRAITLIGRSLEGEQKLLDEIAMLKAELESERIGK 329

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
              LA VSHE+RTPL +IIGFS+++ ++  G L + R  EYA  I +SG+ +L++VN +L
Sbjct: 330 GRLLATVSHELRTPLNSIIGFSDMLTHEIGGKLASDRQREYAGLIHQSGHYLLELVNAVL 389

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
           D S++E+G  ++  +     +AV    +++   A +K +       N +  ++AD R+V+
Sbjct: 390 DNSRLETGTYSIAPQSFVFRDAVEMCTAVMLPQAEKKGVDFCHRVGNGVGELVADRRAVQ 449

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNE---EVILRVRDTGVGMTNYELEKAMKPFGQ 762
           QI LN+ +NA+ FT SGG + I       +    +   V DTG+G+   +L++   PF +
Sbjct: 450 QILLNLATNAVKFTQSGGCVTIDAARVMADGCPMLEFSVSDTGIGIEPEDLQRIGTPFVR 509

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
             NS     EG+GLGL + K +V+ + G   + S P +GT++ I  PL 
Sbjct: 510 AGNSYTQAQEGSGLGLSVVKGLVERHQGSMQLKSRPGEGTVVMIRLPLA 558


>gi|134299130|ref|YP_001112626.1| integral membrane sensor hybrid histidine kinase [Desulfotomaculum
           reducens MI-1]
 gi|134051830|gb|ABO49801.1| integral membrane sensor hybrid histidine kinase [Desulfotomaculum
           reducens MI-1]
          Length = 916

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 75/258 (29%), Positives = 125/258 (48%), Gaps = 8/258 (3%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E ++ K  L          S +KS+FL+ +SHE+RTPL +++  + ++   + G L  P+
Sbjct: 486 ELQKAKTALEEQASHLALSSQYKSEFLSNMSHELRTPLNSLLILARILVENKDGNLS-PK 544

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
            +EYA  I  SGN +L+++ND+ D++KIE+GK+ +  E +SL E +       Q  A +K
Sbjct: 545 QVEYAETILSSGNDLLNLINDIFDLAKIEAGKLIVKPEQISLTELIYTLERQFQPIARQK 604

Query: 683 RILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-----TSNEE 736
            +       N+IP     D   + QI  N+LSNA  FT  G  + +             +
Sbjct: 605 LLDFTIQLDNDIPKTFFTDKNRLMQILKNLLSNAFKFTNEG-CVNLHVQRATKISEKGTQ 663

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           ++  V DTG+G+   +     + F Q   +   +  GTGLGL + + +     G   + S
Sbjct: 664 IVFSVSDTGIGIAKDKQALIFEAFQQGDGTTSRKFGGTGLGLSICRELAGLLGGFIELQS 723

Query: 797 TPAKGTLIEIIFPLYDTS 814
              KG+   +  P YD  
Sbjct: 724 IKGKGSTFSVYIPTYDVE 741


>gi|265983704|ref|ZP_06096439.1| integral membrane sensor signal transduction histidine kinase
           [Brucella sp. 83/13]
 gi|264662296|gb|EEZ32557.1| integral membrane sensor signal transduction histidine kinase
           [Brucella sp. 83/13]
          Length = 532

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 92/349 (26%), Positives = 168/349 (48%), Gaps = 4/349 (1%)

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
             ++ EGI+ S +   +KL G   + +        +           L ++ +    + +
Sbjct: 134 FGLDIEGIVSSVDGETAKLLGVQPKMLEGTALIDRVHVADRVQYLSLLADLRAGMATRKV 193

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
           +            +      +        +L    +   ++  ++++  K   E E   K
Sbjct: 194 DVRLRSIE-NGNPVFRAYRFEGAGSHRAITLIGRSLEGEQKLLDEIAMLKAELESERIGK 252

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
              LA VSHE+RTPL +IIGFS+++ ++  G L + R  EYA  I +SG+ +L++VN +L
Sbjct: 253 GRLLATVSHELRTPLNSIIGFSDMLTHEIGGKLASDRQREYAGLIHQSGHYLLELVNAVL 312

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
           D S++E+G  ++  +     +AV    +++   A +K +       N +  ++AD R+V+
Sbjct: 313 DNSRLETGTYSIAPQSFVFRDAVEMCTAVMLPQAEKKGVAFCHRVGNGVGELVADRRAVQ 372

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNE---EVILRVRDTGVGMTNYELEKAMKPFGQ 762
           QI LN+ +NA+ FT SGG + I       +    +   V DTG+G+   +L++   PF +
Sbjct: 373 QILLNLATNAVKFTQSGGCVTIDAARVMADGCPMLEFSVSDTGIGIEPEDLQRIGTPFVR 432

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
             NS     EG+GLGL + K +V+ + G   + S P +GT++ I  PL 
Sbjct: 433 ADNSYTQAQEGSGLGLSVVKGLVELHQGSMQLKSRPGEGTVVMIRLPLA 481


>gi|313500183|gb|ADR61549.1| GacS [Pseudomonas putida BIRD-1]
          Length = 917

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 80/244 (32%), Positives = 141/244 (57%), Gaps = 10/244 (4%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  A+K A + S  KS+FLA +SHEIRTPL  I+GF+ +++     P    R ++Y N 
Sbjct: 271 ELDMARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSEMTP----RQLDYLNT 326

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I++S + +L I+N++LD SKIE+GK+ L   P +L + + + ++++   A+ K++ + + 
Sbjct: 327 IEKSADNLLGIINEILDFSKIEAGKLVLDSIPFNLRDLIQDTLTILAPAAHAKQLELLSL 386

Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDT 744
              + P  ++ D   +KQI  N++SNAI FT  G  I++        E    + + V+DT
Sbjct: 387 IYRDTPASLVGDPLRLKQILTNLVSNAIKFTREG-TIVVRAMLEDEHEDCAQLRISVQDT 445

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G++  ++    + F Q  NS   +  GTGLGL ++K +++   G+  + STP +G+  
Sbjct: 446 GIGLSPQDVRTLFQAFSQADNSLARQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSQF 505

Query: 805 EIIF 808
            I  
Sbjct: 506 WISL 509


>gi|120611300|ref|YP_970978.1| multi-sensor signal transduction histidine kinase [Acidovorax
           citrulli AAC00-1]
 gi|120589764|gb|ABM33204.1| multi-sensor signal transduction histidine kinase [Acidovorax
           citrulli AAC00-1]
          Length = 454

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 83/420 (19%), Positives = 165/420 (39%), Gaps = 43/420 (10%)

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC---SILEAT 461
           W     L         ++     +     +      R N+  +     +L    + L+AT
Sbjct: 45  WRGSRVLRWLRDGDLASSPSLRGLWGEAADRFRRLLRQNQADIAASDARLQEILAALQAT 104

Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
            +G+ +++ EG I   N+     FG      + +     L     S              
Sbjct: 105 PNGVVLLDAEGHIEWCNQIAVTQFGLDAARDMGQSIGNLLRDPEFSAYYAA--------- 155

Query: 522 RQTLEKITLGSTKEE---KLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578
            Q   +  +   +E    + + + + +          L+  D++  +Q +          
Sbjct: 156 -QDFSRDVVLQGRESTPSRPVRISVHLHPYGDGRKLLLS-RDVTALEQAE---------- 203

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
               + + DF+A VSHEIRTPLT ++GF E ++     PL +     Y N + +    + 
Sbjct: 204 ----AMRRDFVANVSHEIRTPLTVLMGFVETLQT---LPLSSEERARYLNMMSQQAGRMQ 256

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA------ISLVQLYANEKRILIRTSFAN 692
            +V DLL +S++E        E   +D  +         +S +   +     ++    A 
Sbjct: 257 SVVQDLLTLSRLEGSPPPGLTECTPVDALLRRCEDEARGLSALLTRSQSAGHVLEFPPAE 316

Query: 693 NI---PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749
            +    +++     ++    N++ NA+ +TP+GG+I ++    ++      VRDTG G+ 
Sbjct: 317 ALQGAGQLIGVTAELQSALANLIGNAVRYTPAGGRITVAWETLADGSARFSVRDTGPGIE 376

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +  + +  + F ++  S+     GTGLGL + K +V  +     I ST  KG++  + FP
Sbjct: 377 SVHIPRLTERFYRVDRSRSRDTGGTGLGLAIVKHVVQRHSASLGIESTVGKGSVFSVTFP 436


>gi|255008320|ref|ZP_05280446.1| putative two-component system sensor histidine kinase [Bacteroides
           fragilis 3_1_12]
 gi|313146041|ref|ZP_07808234.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
 gi|313134808|gb|EFR52168.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
          Length = 870

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 83/525 (15%), Positives = 169/525 (32%), Gaps = 42/525 (8%)

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIE 361
           +  +    +        +               Y     + + N S L +      +   
Sbjct: 366 IHAQTRLLIQNRLVAQRDEFDNVFHSIRDGVITYDTDLRIHFTNRSLLKMLHLPKDEAAR 425

Query: 362 IAGGLST--LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
              GL    +              +    ++   +         + +  +   ++     
Sbjct: 426 PYEGLPAGSIFKIYNNGKEILRSMLERVVTEEGSVVIPENSFMQEVHSGSYFPVSGEIVP 485

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE---------ATSDGIAIINR 470
                 +            D        E++       ++             G+     
Sbjct: 486 IRAH-GKITGMALSARNISDE-------EMQKRFFSMAVDESSIYPWQYNIRTGLFTF-P 536

Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530
            G ++               ++        +  +   +        L+  L Q+      
Sbjct: 537 AGFLVRF-GFAENKTTISRNEM-----DRMVHPDDQELAFELFNRALA-GLSQSTRMSFR 589

Query: 531 GSTKEEKLLSLRIIIKKLPF-----SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
             + + +          L                 I  +K  + +L+ A+  A +    K
Sbjct: 590 QLSGDGRYEWWEYRTSVLAGLTTDTPYSILGVCQSIQRYKTTEEQLTAARDKALQADKLK 649

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
           S FLA +SHEIRTPL AI+GFS+++ +             +   I+++  L+L ++ND+L
Sbjct: 650 SAFLANMSHEIRTPLNAIVGFSDLLSDT--SGFTEEEVKLFIETINKNCGLLLALINDIL 707

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSV 704
           D+S+IESG M+  F   +L   +       QL      + +      N  + ++ D   +
Sbjct: 708 DLSRIESGTMDFQFAGHNLPLLMKNVYDSQQLNMPS-GVRLVLKLPENSKKYLVTDNVRL 766

Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764
           +Q+  N+++NA  FT  G  I    T        + V DTG G++   L    + F ++ 
Sbjct: 767 QQVVNNLINNAAKFTTQGS-ITFGYTEEEPGYTSIFVEDTGKGISEDGLRHIFERFYKVD 825

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +      +G GLGL + + ++    G   + S   KGT   +  P
Sbjct: 826 SFT----QGAGLGLSICQTIIGRLNGVITVTSKEGKGTRFTVRLP 866


>gi|229195307|ref|ZP_04322079.1| hypothetical protein bcere0001_8790 [Bacillus cereus m1293]
 gi|228588162|gb|EEK46208.1| hypothetical protein bcere0001_8790 [Bacillus cereus m1293]
          Length = 896

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 79/338 (23%), Positives = 148/338 (43%), Gaps = 18/338 (5%)

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            +D++ +            +    +  +L      T E        + +   L++  ++L
Sbjct: 395 HQDLIHQTVDNLGLTIHSIMGRMRIQTLLHESQAMTEELQVQSEELQTQAEELQMQAEEL 454

Query: 549 PFSSCYSLTMHDISEWKQEKN-----KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
             ++    +  + +E K         +L        + S +KS+FLA +SHE+RTPL +I
Sbjct: 455 RTTNEQLESRTEEAEQKTADLQVTKLELEEKASELLRSSKYKSEFLANMSHELRTPLNSI 514

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +  SE++K      L +    E A  I  SG  +L ++ND+LD+SK+E+GK+++ FE  +
Sbjct: 515 LLLSEMLKENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIFEATN 573

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSG 722
           + +  +         A +K +      ++ IP +   D + ++QI  N+LSNA  FT  G
Sbjct: 574 ISDMAASMQQNFLHIAAQKNVEFTVEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKG 633

Query: 723 GQ------IIISTTHTS-----NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
                   I  S           + + + V+DTG+G+   + +   + F Q   +   + 
Sbjct: 634 SVSLHFDSIETSNLSHDMQSISKDWISISVKDTGIGIAKEQHQLIFEAFQQADGATIRKY 693

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            GTGLGL + K       G   + S   +G++  +  P
Sbjct: 694 GGTGLGLSICKEFARLLGGWITLQSHVGEGSIFTVYIP 731


>gi|218902190|ref|YP_002450024.1| sensor histidine kinase/response regulator [Bacillus cereus AH820]
 gi|218536450|gb|ACK88848.1| sensor histidine kinase/response regulator [Bacillus cereus AH820]
          Length = 896

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 79/338 (23%), Positives = 147/338 (43%), Gaps = 18/338 (5%)

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            +D++ +            +    +  +L      T E        + +   L++  ++L
Sbjct: 395 HQDLIHQTVDNLGLTIHSIMGRMRIQTLLHESQAMTEELQVQSEELQTQAEELQMQAEEL 454

Query: 549 PFSSCYSLTMHDISEWKQEKN-----KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
             ++    +  + +E K         +L        + S +KS+FLA +SHE+RTPL +I
Sbjct: 455 RTTNEQLESRTEEAEQKTADLQITKLELEEKASELLRSSKYKSEFLANMSHELRTPLNSI 514

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +  SE++K      L +    E A  I  SG  +L ++ND+LD+SK+E+GK+++ FE  +
Sbjct: 515 LLLSEMLKENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIFEATN 573

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSG 722
           + +  +         A +K +      ++ IP +   D + ++QI  N+LSNA  FT  G
Sbjct: 574 ISDMAASMHQNFLHIAAQKNVKFTVEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKG 633

Query: 723 GQ------IIISTTHTS-----NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
                   I  S           + + + V+DTG+G+   + +   + F Q   +   + 
Sbjct: 634 SVSLHFDSIETSNLSDDMQSISKDWMTISVKDTGIGIAKEQHQLIFEAFQQADGATIRKY 693

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            GTGLGL + K       G   + S   +G+   +  P
Sbjct: 694 GGTGLGLSICKEFARLLGGWITLQSHVGEGSTFTVYIP 731


>gi|83646964|ref|YP_435399.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83635007|gb|ABC30974.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 792

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 86/268 (32%), Positives = 146/268 (54%), Gaps = 10/268 (3%)

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           +I E K  +  L   +  AE+ +  KS FLA +SHE+RTPL AIIG+SE+++        
Sbjct: 254 EIQERKVVEKDLIATRNRAEEANKAKSRFLANMSHELRTPLNAIIGYSEMLQE--VVAED 311

Query: 620 NPRYIEYANYI---DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
           +    E  + I     +G  +L ++ND+LDISKIE+GKM +  E  S+++ V E    ++
Sbjct: 312 DYEREEILDDIGKVRSAGKHLLSLINDILDISKIEAGKMQISIEAFSMEDLVDEVAGALR 371

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT---S 733
           L A+E+R  +    A ++  + +DL  V+QI  N+LSNA+ FT  G  + +         
Sbjct: 372 LLADERRNKLVVRGAGDVGVVHSDLVKVRQILFNLLSNAVKFTEDG-VVELICERESVAG 430

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
            + ++ +VRDTG+G+++  +++  +PF Q   S   R  GTGLGL ++++      G+  
Sbjct: 431 EDWMLCKVRDTGIGISDRAIKELFRPFSQADPSTTRRYGGTGLGLAISRSYATMLGGEIT 490

Query: 794 IFSTPAKGTLIEIIFP-LYDTSHPHDCI 820
           + S   +G+   I  P   + + P + I
Sbjct: 491 VSSKEGEGSEFCIRLPTTAEINGPEERI 518


>gi|60680953|ref|YP_211097.1| putative two-component system sensor histidine kinase [Bacteroides
           fragilis NCTC 9343]
 gi|253563207|ref|ZP_04840664.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|265762908|ref|ZP_06091476.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
 gi|60492387|emb|CAH07154.1| putative two-component system sensor histidine kinase [Bacteroides
           fragilis NCTC 9343]
 gi|251946983|gb|EES87265.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|263255516|gb|EEZ26862.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
          Length = 870

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 83/525 (15%), Positives = 167/525 (31%), Gaps = 42/525 (8%)

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIE 361
           +  +    +        +               Y     + + N S L +      +   
Sbjct: 366 IHAQTRLLIQNRLVAQRDEFDNVFHSIRDGVITYDTDFRIHFTNRSLLKMLHLPKDEAAR 425

Query: 362 IAGGLST--LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
              GL    +              +    ++ + +         + +  +   ++     
Sbjct: 426 PYEGLPAGSIFKIYNNGKEILRPMLKQVVTEESSVVIPENSFMQEVHSGSYFPVSGEVVP 485

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE---------ATSDGIAIINR 470
                 +            D        E++       ++             G+     
Sbjct: 486 IRAH-GKITGMALSARNISDE-------EMQKRFFSMAVDESSIYPWQYNIRTGLFTF-P 536

Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530
            G +                ++        +  +            L+  L Q+      
Sbjct: 537 AGFLTRF-GFAENKTTISRGEM-----DRMIHPDDQESAYEIFNRALA-GLSQSTRMSFR 589

Query: 531 GSTKEEKLLSLRIIIKKLPF-----SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
             + +            L                 I  +K  + +L+ A+  A +    K
Sbjct: 590 QLSGDGNYEWWEYRTSVLAGLTTDTPYSILGVCQSIQRYKTTEEELTAARDKALQADKLK 649

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
           S FLA +SHEIRTPL AI+GFS+++ +             +   I+++  L+L ++ND+L
Sbjct: 650 SAFLANMSHEIRTPLNAIVGFSDLLSDT--SGFTEEEVKLFIETINKNCGLLLALINDIL 707

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSV 704
           D+S+IESG M+  F   +L   +       +L      + +      N  + ++ D   +
Sbjct: 708 DLSRIESGTMDFQFAGHNLPLLMKNVYDSQRLNMPP-GVQLVLKLPENSKKYLVTDNVRL 766

Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764
           +Q+  N+++NA+ FT  G  I    T        L V DTG G++   L    + F ++ 
Sbjct: 767 QQVVNNLINNAVKFTTQGS-ITFGYTEEEPGYTSLFVEDTGKGISEDGLRHIFERFYKVD 825

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +      +G GLGL + + +V    G   + S    GT   +  P
Sbjct: 826 SFT----QGAGLGLSICQTIVGRLNGTITVTSEEGHGTRFTVRLP 866


>gi|313105812|ref|ZP_07792075.1| sensor/response regulator hybrid [Pseudomonas aeruginosa 39016]
 gi|310878577|gb|EFQ37171.1| sensor/response regulator hybrid [Pseudomonas aeruginosa 39016]
          Length = 925

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 81/254 (31%), Positives = 142/254 (55%), Gaps = 10/254 (3%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  A+K A + S  KS+FLA +SHEIRTPL  I+GF+ +++     P    R  +Y   
Sbjct: 269 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTNLLQKSELSP----RQQDYLTT 324

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I +S   +L I+N++LD SKIE+GK+ L   P +L + + +A++++   A+EK++ + + 
Sbjct: 325 IQKSAESLLGIINEILDFSKIEAGKLVLENLPFNLRDLIQDALTMLAPAAHEKQLELVSL 384

Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN----EEVILRVRDT 744
              + P ++  D + +KQI  N++ NAI FT  GG + +            ++ + V+DT
Sbjct: 385 VYRDTPIQLQGDPQRLKQILTNLVGNAIKFT-QGGTVAVRAMLEDESDDRAQLRISVQDT 443

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G++  + +   K F Q  NS   +  GTGLGL ++K +++   G+  + STP +G   
Sbjct: 444 GIGLSEEDQQALFKAFSQADNSLSRQAGGTGLGLVISKRLIEQMGGEIGVDSTPGEGAEF 503

Query: 805 EIIFPLYDTSHPHD 818
            I   L  +   ++
Sbjct: 504 WISLSLPKSRDDNE 517


>gi|269960400|ref|ZP_06174773.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269834827|gb|EEZ88913.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 932

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 83/259 (32%), Positives = 136/259 (52%), Gaps = 10/259 (3%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           + + +  +L  AKK A++ +  KS+FLA +SHE+RTPL  +IGF+  +   +        
Sbjct: 269 QLEIQNVELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLSN----S 324

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             +Y   I++S N +L+I+ND+LD SK+E+GK+ L   P    E++ E I+L    A+EK
Sbjct: 325 QTDYLQTIEKSANNLLNIINDILDFSKLEAGKLALENIPFEFRESLEEVINLQATSAHEK 384

Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT----SNEEV 737
            + I       IP+ ++ D   ++QI  N++ N+I FT  G  I IS         + E+
Sbjct: 385 GLEITLKVDPKIPQGLVGDPLRIQQILTNLVGNSIKFTERG-NIDISVEMRSQSGDSVEL 443

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
              VRDTG+G++  +  +  + F Q   S   R  GTGLGL + + +V    G+  + S 
Sbjct: 444 QFMVRDTGIGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSR 503

Query: 798 PAKGTLIEIIFPLYDTSHP 816
             +G+       L+ T  P
Sbjct: 504 LHQGSTFWFTVRLHSTEMP 522


>gi|108802957|ref|YP_642894.1| PAS/PAC sensor signal transduction histidine kinase [Rubrobacter
           xylanophilus DSM 9941]
 gi|108764200|gb|ABG03082.1| PAS/PAC sensor signal transduction histidine kinase [Rubrobacter
           xylanophilus DSM 9941]
          Length = 639

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 88/604 (14%), Positives = 199/604 (32%), Gaps = 21/604 (3%)

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           +  +G   V  ++    +        R + +++ +                P   S   +
Sbjct: 53  QAAEGMLLVSGDRVLEANAACAALLGRERGELAGMPLGELLAGGAGGVPLPPGKRSWSGT 112

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
           L  +         +    +     +                       E E+     V++
Sbjct: 113 LALRSGGGEPVECEAAASRVLAGGREAVC--LALRDVTERRREEEKLRETESRYRTLVEQ 170

Query: 329 CPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
            P   ++         Y +P    +  Y              +L      D   +     
Sbjct: 171 VPAIVYIEDVQTQATLYDSPRIEEILGYPRDLCEREPLYWHRIL---YPEDRERVLEAER 227

Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
              +R       R+          + +        ++  E     G+  +  + R  +  
Sbjct: 228 EAVERGSFVLEYRVFA---ADGRVVWVRDEARLLRDESGEPRFWQGVISDITEQRRAEDA 284

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP-VEDILRKPFTVFLEQNT 505
           +     +  S+++ + DG+A+   EG  +  N A ++L G    +++L +P    +  + 
Sbjct: 285 LRESEERYRSLVQLSPDGVAV-ESEGRFVYLNEAGARLLGASSPQEVLGQPVMERVHPDC 343

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
                     +   +  +  E+  L     E  + +     +        L + D++  K
Sbjct: 344 RENARRRARRLRRGERVELQEERWLRLDGREMDVEVSAAPVQYGGRPSAQLVLRDVTGRK 403

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + + ++   K    + ++    F   ++H++R PL ++ GF++++       LG P   E
Sbjct: 404 RAEREIVRQKAELARSNAELEQFAYLIAHDLRAPLRSMDGFAQILLEDCAPRLG-PDGRE 462

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           Y   I R+   +  ++++LL +S++   + ++  EPV L          ++    ++R+ 
Sbjct: 463 YLARIQRATRKMARMIDELLGLSRL--ARADIRREPVDLSAMARSIGEELRQGEPDRRVE 520

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST-THTSNEEVILRVRDT 744
                         D R ++    N+L NA  FT    +  I         E +  VRD 
Sbjct: 521 FIV---AGGLAAEGDRRLLRVALANLLENAWKFTRRTPRPRIVFGRIERGGERVFFVRDN 577

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           GVG       K   PF ++    +   EGTG+GL     +++ + G+ +      +G   
Sbjct: 578 GVGFDMAYAGKLFGPFQRLHA--EEEFEGTGIGLAAVARVIERHGGRVWAEGAEGEGATF 635

Query: 805 EIIF 808
               
Sbjct: 636 YFTL 639



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 49/388 (12%), Positives = 96/388 (24%), Gaps = 41/388 (10%)

Query: 94  YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIE 153
            + E +      +G    ++ GM L ++            G       +W G   L    
Sbjct: 65  RVLEANAACAALLGRERGELAGMPLGELLAGGAGGVPLPPGK-----RSWSGTLAL--RS 117

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
           G    V  + AA  + +  RE         +             +  + ++  L E    
Sbjct: 118 GGGEPVECEAAASRVLAGGREAV----CLALRDVTERRREEEKLRETESRYRTLVEQVPA 173

Query: 214 HSSVEKEKYDIFSQQSP--PPHLRMKNKVSSLTEYYAH----KDDVLKTEKYPLLTSEES 267
              +E  +       SP     L     +      Y H     +D  +  +      E  
Sbjct: 174 IVYIEDVQTQATLYDSPRIEEILGYPRDLCEREPLYWHRILYPEDRERVLEAEREAVERG 233

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS----HRNHPSLSAYFDEGENLTP 323
           S   +      +      +     L++ S E   +                  E E    
Sbjct: 234 SFVLEYRVFAADGRVVWVRDEARLLRDESGEPRFWQGVISDITEQRRAEDALRESEERYR 293

Query: 324 ETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA----------- 372
             V   P    V S G   Y N +   L    S  ++     +  +              
Sbjct: 294 SLVQLSPDGVAVESEGRFVYLNEAGARLLGASSPQEVLGQPVMERVHPDCRENARRRARR 353

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
            +  +   ++     R D   +        +Q+    S  +         +         
Sbjct: 354 LRRGERVELQEERWLRLDGREMDVEVSAAPVQYGGRPSAQLVLRDVTGRKRA-------- 405

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEA 460
            E E V  +    +   E+ Q   ++  
Sbjct: 406 -EREIVRQKAELARSNAELEQFAYLIAH 432



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/270 (8%), Positives = 74/270 (27%), Gaps = 33/270 (12%)

Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIE----IAGGLSTLLDAPKLSDNNAI 381
            ++      + S   +  AN +   L   +  +                        +  
Sbjct: 51  FEQAAEGMLLVSGDRVLEANAACAALLGRERGELAGMPLGELLAGGAGGVPLPPGKRSWS 110

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
             + L       +   A    +      ++ +                      +  + R
Sbjct: 111 GTLALRSGGGEPVECEAAASRVLAGGREAVCLALR-------------------DVTERR 151

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILST-NRAVSKLFGYPVEDILRKPFTV- 499
             + K+     +  +++E     + I + +       +  + ++ GYP +   R+P    
Sbjct: 152 REEEKLRETESRYRTLVEQVPAIVYIEDVQTQATLYDSPRIEEILGYPRDLCEREPLYWH 211

Query: 500 -FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----Y 554
             L       +     E +      +          + +++ +R   + L   S     +
Sbjct: 212 RILYPEDRERVLEAEREAVERG---SFVLEYRVFAADGRVVWVRDEARLLRDESGEPRFW 268

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
              + DI+E ++ ++ L  +++        
Sbjct: 269 QGVISDITEQRRAEDALRESEERYRSLVQL 298



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/238 (7%), Positives = 56/238 (23%), Gaps = 9/238 (3%)

Query: 92  HGYLKEISEELPKTIG-NYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150
            G    ++E   + +G +   +++G  + +       +        L+R      +   W
Sbjct: 308 EGRFVYLNEAGARLLGASSPQEVLGQPVMERVHPDCRENARRRARRLRRGERVELQEERW 367

Query: 151 -PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
             ++G    + ++++A P+    R         ++              R   + +  + 
Sbjct: 368 LRLDGR--EMDVEVSAAPVQYGGRP----SAQLVLRDVTGRKRAEREIVRQKAELARSNA 421

Query: 210 IKKGHSSVEKEKYDI-FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
             +  + +                 + +++    L          ++     +    +  
Sbjct: 422 ELEQFAYLIAHDLRAPLRSMDGFAQILLEDCAPRLGPDGREYLARIQRATRKMARMIDEL 481

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
           L            +                  E               EG+       
Sbjct: 482 LGLSRLARADIRREPVDLSAMARSIGEELRQGEPDRRVEFIVAGGLAAEGDRRLLRVA 539


>gi|257060785|ref|YP_003138673.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 8802]
 gi|256590951|gb|ACV01838.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 8802]
          Length = 680

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 81/432 (18%), Positives = 173/432 (40%), Gaps = 52/432 (12%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINK--RKMEIEVMQLCSILEATSDGIAIINREGIIL 475
                +  E +       E ++    +   ++  E  +L +++    DG  +++    +L
Sbjct: 240 LPFGGELGELIFSFNEMAERLERYEEQNIEELTAEKAKLETLVSTIVDGAILLDNNLQLL 299

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL-------------- 521
             N    ++FG+   +++       L       ++  L E+                   
Sbjct: 300 LVNPRARRMFGWEGREVIGVNVLELLPTELSFELSEPLQEMARKGALEDKGGQNPSDPIS 359

Query: 522 --------RQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNK 570
                     T E     +   ++++ + +        +     ++T+ DI+        
Sbjct: 360 EPSEGQQGSSTGEFRITLTQPTQRIVRILLTQVFDQQRATVKGIAMTVQDITR------- 412

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
                    + ++ KS F++ VSHE+RTPL  I  F E + ++    L      E+    
Sbjct: 413 -------EVELNAAKSQFISNVSHELRTPLFNIKSFIETL-SEFGEDLTEEERKEFLETA 464

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
           +   + +  +VND+LD+S++ES K+  H + V L + + + +   QL A +K + +    
Sbjct: 465 NHETDRLTRLVNDVLDLSRLESSKI-YHLDRVDLSQVIEQILRTHQLNAKDKELELSYQP 523

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN--------EEVILRVR 742
             N+  +L     + Q+  N++ N++ FT  GG+I++   H           +++ + + 
Sbjct: 524 EGNLSPVLGHYDLLLQVMTNLVGNSLKFTEPGGKIVLRAYHVRGDSSNPIHQDKIRVEIS 583

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG+G+   + E     F ++ N +    EGTGLGL + K +++ +    Y+ S    GT
Sbjct: 584 DTGIGIDPEDQEAIFSRFFRVEN-RVHTLEGTGLGLSIVKNIINKHHSHIYLVSEVGVGT 642

Query: 803 LIEIIFPLYDTS 814
                  +Y   
Sbjct: 643 TFWFDLAVYQDH 654


>gi|148380721|ref|YP_001255262.1| sensory box histidine kinase [Clostridium botulinum A str. ATCC
           3502]
 gi|153931924|ref|YP_001385005.1| sensory box histidine kinase [Clostridium botulinum A str. ATCC
           19397]
 gi|153937261|ref|YP_001388475.1| sensory box histidine kinase [Clostridium botulinum A str. Hall]
 gi|148290205|emb|CAL84324.1| putative sensory transduction histidine kinase [Clostridium
           botulinum A str. ATCC 3502]
 gi|152927968|gb|ABS33468.1| sensory box histidine kinase [Clostridium botulinum A str. ATCC
           19397]
 gi|152933175|gb|ABS38674.1| sensory box histidine kinase [Clostridium botulinum A str. Hall]
          Length = 702

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 83/398 (20%), Positives = 160/398 (40%), Gaps = 17/398 (4%)

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILST 477
              ++  E +          D   ++   E     +  +++     +A+++  +      
Sbjct: 282 PIMDENNEILYTISSIKNVTDLIESQIISEERAEFIKYVVDCIELPLAVLDYPDLTYRLV 341

Query: 478 NRAVSKLFGYPV-----EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ--TLEKITL 530
           N    +L           ++L         +         L ++    +++     K  +
Sbjct: 342 NERYEELVERLHTKKIKGNLLGNTVENIFRKEEFKEQLEVLQKMKDGTIKEYTFSPKKFI 401

Query: 531 GSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
             + EE+   +R I  +        +   D++E  +   +L       EK +  K +F  
Sbjct: 402 LQSGEERFFKVRYIYHETKNKKRVHIHGSDVTEEFKSNLEL-------EKVNKLKDEFFT 454

Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650
            +SHE+RTPLT I    + +    +    N    +    I+++   +L ++N++LDISK 
Sbjct: 455 IISHELRTPLTIIYSSLQ-LAYDIYPEDINLNIDKILKRINQNTARLLKLINNILDISKA 513

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710
           E+G + L+ E   +       ++ +  YAN K I +          +  D    ++I LN
Sbjct: 514 EAGFLTLNNEYFDIVLETENIVNSITNYANSKNINLIFDTTKEEEEVWIDKDKYERILLN 573

Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           +LSNA+ FTP    I ++     N    L V+D G G+   +++     F Q+ +S    
Sbjct: 574 LLSNAVKFTPENKSIYVTLKIYKNNF-KLIVKDEGRGIPKEKIDCIFNRFAQVNSSLSRS 632

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            EGTG+GL L K +VD   G+  ++S   KGT   +  
Sbjct: 633 AEGTGIGLSLVKKIVDLMDGEIKVYSILGKGTTFTVKI 670


>gi|270296316|ref|ZP_06202516.1| two-component system sensor histidine kinase [Bacteroides sp. D20]
 gi|270273720|gb|EFA19582.1| two-component system sensor histidine kinase [Bacteroides sp. D20]
          Length = 1037

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 92/419 (21%), Positives = 177/419 (42%), Gaps = 38/419 (9%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE---------ATSDGIAII 468
                        +    +  +    + ++     +L   L+                + 
Sbjct: 495 DIVVKASDNGEYMHVFCVDSTELHHTQIQLRSTNRKLSMALDVANIVPWKWNLRTHTILC 554

Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFL---EQNTPSVMNHYLTEILSLDLRQTL 525
           +    I  +N A     G   ++ L  P + +     +     +    T+++   +++  
Sbjct: 555 DVNKPIELSNNA-----GIMDDEQLSVPDSQYFSKIHKEDLEKVKQAYTDLIEGRIQKVK 609

Query: 526 EKITLGSTKEEK----LLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIA 578
           E+  + +  +       +  +  ++    ++       +   I+E K+ + +L  AK  A
Sbjct: 610 EEYRVINHADGHKHFDWVEAQAAVETYDENNKPLTLVGSSLVITERKKMETELVSAKNRA 669

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
           E+ +  KS FLA +SHEIRTPL AI+GFS ++ +            EY + I+ +  L+L
Sbjct: 670 EESNKLKSAFLANMSHEIRTPLNAIVGFSGILASTEEEEEK----QEYVSIIENNNTLLL 725

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN-EKRILIRTSFANNIPR- 696
            +++D+LD+SKIE+G M        L++ + E  SL+ L  + EK + +  SF   +P  
Sbjct: 726 QLISDILDLSKIEAGTMEFIDTDFELNKVMRELESLLCLKLSPEKNVTL--SFEPGLPEC 783

Query: 697 -ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755
            I ++   + Q+ +N+++NAI FT  G  I        ++ +   V DTG G+   + E 
Sbjct: 784 HIHSERNRLSQLVINLVTNAIKFTQEGS-IRFGYKLQDDKMLYFYVSDTGCGIPEDKQES 842

Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
               F ++ N      +GTGLGL + + +V    G   + S P +G+      P   TS
Sbjct: 843 IFGRFVKLNNF----AQGTGLGLSICQMLVQHMGGNIGLTSKPGEGSTFWFTLPYVPTS 897


>gi|220929310|ref|YP_002506219.1| histidine kinase [Clostridium cellulolyticum H10]
 gi|219999638|gb|ACL76239.1| histidine kinase [Clostridium cellulolyticum H10]
          Length = 508

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 67/256 (26%), Positives = 128/256 (50%), Gaps = 6/256 (2%)

Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
              ++  D  E  Q     ++  +  ++    +  F+A VSHE+RTP+T+I GF E I +
Sbjct: 250 RLVVSSQD--EIGQLAESFNNMVEDLQRLEELRRGFIANVSHELRTPMTSIRGFIEGILD 307

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
              G +   +   Y   +    N +  +VNDLLD++++ESG++ L  +P  ++E +   +
Sbjct: 308 ---GTIPPEKQRGYLTIVRDETNRLNRLVNDLLDLARMESGELTLSMKPFDINELIRICV 364

Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
             ++     K + I  +F  +   +LAD  S++++ +N+L NA+ F+   G+II+ T   
Sbjct: 365 IKLETLITSKNLQIEANFDVDSMMVLADKDSIERVIINLLHNAVKFSNENGKIIVETAKN 424

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
              +V + V+D G+G+ + + ++    F +   S+     GTGLGL + K ++  +    
Sbjct: 425 KE-KVFISVKDNGIGIDSDDKKRIWDRFYKSDKSRGKDKTGTGLGLAIVKNILTEHKQDI 483

Query: 793 YIFSTPAKGTLIEIIF 808
            + S   KGT      
Sbjct: 484 LLESDVGKGTKFTFTL 499


>gi|188583109|ref|YP_001926554.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium populi BJ001]
 gi|179346607|gb|ACB82019.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium populi BJ001]
          Length = 512

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 85/518 (16%), Positives = 187/518 (36%), Gaps = 29/518 (5%)

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG---NLFYANPSFLLLTKYKSVDDIE 361
                      DEG  +         +   ++S         A  +   L    S     
Sbjct: 4   PEAAAGPERSRDEGLTVEDFRQTLHEVGVCIWSLDIPTGHVSATQACARLFGTPSERL-- 61

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
            +   +  L  P      A     + RS  +          +Q +      +        
Sbjct: 62  TSFAATQELVHPDDRQVRAEAIEGVLRSGGS---YEVDYRVLQPDGRR-QWLRSRGRVHL 117

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
           +         G+     + +  + ++      L SIL+   + + +I+  G+I S N A 
Sbjct: 118 DAEGRPRRHRGVVFSIEEQKQVEAELRTREAHLRSILDTVPEAMVVIDEAGLIHSFNPAA 177

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL--EKITLGSTKEEKLL 539
            +LFGY   + + +   + + +   +  +  L       LR+ +   +   G  ++    
Sbjct: 178 ERLFGYAAGEAVGQNVRILMPEPVQTGHDADLARYQRTRLRRIIGTTRTVTGRRRDGSTF 237

Query: 540 SLRIIIKKLPFSSCYS--LTMHDISEWKQEKNKLSHAKKIAEKESS--HKSDFLARVSHE 595
            + + + ++           ++D++E ++ + +L   +      S      +    ++HE
Sbjct: 238 PMELAVGEMSSGDQVFFTGFINDLTEQQRTEARLQELQSELGHVSRLSAMGEMATTLAHE 297

Query: 596 IRTPLTAIIGFSEVIKN--QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           +  PL AI  ++   +    + GP    R  E  +           I++ L +   ++ G
Sbjct: 298 LNQPLGAISNYTNGCRRLLTQPGPDTIARAREVLDKASEQALRARQIISRLREF--VDRG 355

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713
           +     EPV   E + EA +L    A E+ +  R      I  +LAD   ++Q+ +N++ 
Sbjct: 356 ETEKRAEPV--AEMIEEAGALTLAGAGEQGVTARIVPDRGIGSVLADRVQIQQVLINLMR 413

Query: 714 NAIHFTPSGGQ--IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           NA+     G +  + ++    + +   + V DTG G+     ++  +PF    +      
Sbjct: 414 NALEAMQGGRRRELTVAARRVAPDWTEIAVSDTGPGIAEAVADRLFQPFVTTKD------ 467

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            G G+GL + + +V+A+ G+ ++    A G    +  P
Sbjct: 468 GGMGVGLSICRTIVEAHGGRLWVERNAAGGATFRLTLP 505



 Score = 45.0 bits (105), Expect = 0.047,   Method: Composition-based stats.
 Identities = 39/348 (11%), Positives = 87/348 (25%), Gaps = 30/348 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL-----HIDPNNHIGDLLKRQNTW 143
           ID  G +   +    +  G  A + +G  +  +           D   +    L+R    
Sbjct: 164 IDEAGLIHSFNPAAERLFGYAAGEAVGQNVRILMPEPVQTGHDADLARYQRTRLRRIIGT 223

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
               T    +G+    P++LA   + S ++ F  F GF  ++         A   RL + 
Sbjct: 224 TRTVTGRRRDGSTF--PMELAVGEMSSGDQVF--FTGF--INDLTEQQRTEA---RLQEL 274

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
            S L  + +  +  E           P   +                D + +  +     
Sbjct: 275 QSELGHVSRLSAMGEMATTLAHELNQPLGAISNYTNGCRRLLTQPGPDTIARAREVLDKA 334

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
           SE++    Q            + +          E    L+               +   
Sbjct: 335 SEQALRARQIISRLREFVDRGETEKRAEPVAEMIEEAGALTLAGAGEQGVTARIVPDR-- 392

Query: 324 ETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
                            +       L+     +++ ++  G    L  A +    +  + 
Sbjct: 393 --------GIGSVLADRVQI--QQVLINLMRNALEAMQG-GRRRELTVAARRVAPDWTEI 441

Query: 384 VMLYRSDRTCIAASARLHT---IQWNRENSLAMTFIPFEKANQFPENM 428
            +         A + RL        +    + ++              
Sbjct: 442 AVSDTGPGIAEAVADRLFQPFVTTKDGGMGVGLSICRTIVEAHGGRLW 489


>gi|156743359|ref|YP_001433488.1| multi-sensor signal transduction histidine kinase [Roseiflexus
           castenholzii DSM 13941]
 gi|156234687|gb|ABU59470.1| multi-sensor signal transduction histidine kinase [Roseiflexus
           castenholzii DSM 13941]
          Length = 719

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 93/629 (14%), Positives = 202/629 (32%), Gaps = 69/629 (10%)

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           +   G  +V                +R  +   +L        D  +     L T  E +
Sbjct: 137 DEALGVLAVCSANAARVFGSEEVAFIRTLSGQMALAIASFRSRDAAERRTQELKTLNEIA 196

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
                   T  + +   +Q        +                   + GE         
Sbjct: 197 ATVTSTLDTHEVYRLVVQQLSDYFHVEAGSLLLLDESTGDLEFVMTIEGGEEKLAGIRVP 256

Query: 329 CPIPFF--VYSHGN--LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
                   V   G   + +            S           ++L  P ++    I  +
Sbjct: 257 AGQGVVGHVVRTGRWEIVHDVTRDPRFYSKISET---TGFPTRSILCVPMIARGRVIGAI 313

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
            L                                    +    M         ++     
Sbjct: 314 ELLNKIGGDFDEE-------------------------EAQRLMRMAAFIAVAIENARLF 348

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           +++     ++ SIL +T+DGI + +  G I   N   +++     E ++ +     + + 
Sbjct: 349 QQIAAGRDRMASILNSTADGILMADMRGDIQLANPLAARICACTEEALIGRRIDDVVTEL 408

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL--PFSSCYSLTMHDIS 562
                                 +    +    + + L  +             L + DI+
Sbjct: 409 QARAHEVSAPAWGQDASAPVQIRDLALTDGMHRYVRLLRLPVYDAHNEPHGELLILRDIT 468

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           + ++ +                + D+ + + H++R PLT+I+    +++    GP+ N +
Sbjct: 469 QERELE--------------QLREDYTSMLVHDLRAPLTSIMNGIMMLQRGIVGPV-NEQ 513

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             E      +    +L ++N LLDISK+E G+M L  +P+ +   + +AI  +   A+ +
Sbjct: 514 QQELLKIAYQGSQTMLHLINTLLDISKLEQGQMTLDLKPLPIFSVIDQAIERLHNLASSR 573

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII---------------- 726
            + I    A  +P +  D   + ++  N+L NAI F+P    +                 
Sbjct: 574 HVTIEQRLAPYLPPVEIDGEKIVRVLQNLLDNAIKFSPPQSVVTIGAFLAGSTSPLPEDA 633

Query: 727 -ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
            +  +    + +++ V+D G G+     ++  + FGQ+   +  +  GTGLGL   +  V
Sbjct: 634 PVHLSIEGEDYLVVWVQDRGPGIPPAYFQRIFEKFGQV---RGRKVRGTGLGLTFCRLAV 690

Query: 786 DANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           +A+ G+ ++ S    G++     P+   S
Sbjct: 691 EAHGGRIWVESVEGSGSVFAFTLPVRRDS 719


>gi|134291304|ref|YP_001115073.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia vietnamiensis
           G4]
 gi|134134493|gb|ABO58818.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia vietnamiensis
           G4]
          Length = 745

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 101/591 (17%), Positives = 197/591 (33%), Gaps = 47/591 (7%)

Query: 235 RMKNKVSSLTEYYAHKDDVLKT-EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293
           ++ ++V+S +              +   L +  + L   E  +               L 
Sbjct: 27  QLVSEVASFSADALRDGGSAIVIARPERLAAVYARLGTLERANGSAARDRVFMSSAQALL 86

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTK 353
           ++  +       R   S+    +                  V++ G +     +      
Sbjct: 87  DSCMDGGLPDPARFRRSIGTIVEAAVRAGRP----------VHAFGEMVALLCAQHRYAG 136

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
              ++ +                 ++A          R   A   R+      R +   +
Sbjct: 137 ALRLEALWNELIERYRFSLYCGYPHDAFPSAEQSEMFRHVCALHRRILPSASLRSDENQL 196

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII-NREG 472
                    +               D    +   E +      +L      IA++     
Sbjct: 197 HLTLALSQQRA----------RALTDEIRRREDAEQQRN---GVLMHAPLPIALLSGAAH 243

Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI---- 528
            I+  N   S L G    DI+ +P T  L     + +   L          T+ +     
Sbjct: 244 RIVLANHRFSALCG--RTDIVGRPLTSVLPGGDTAAIARALEAARVQGRSTTIGEHHDRP 301

Query: 529 --TLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK------ 580
                     ++  L    + L       ++  +++E    + KL  A    ++      
Sbjct: 302 DTDDTDADGARVYRLHFNPQPLADGLGVIVSAVEVTEHVAAREKLVAANAERDRLLGELR 361

Query: 581 -ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639
             +  K  FLA + HE+R PLT I    E+I+N+      N         I R  + ++ 
Sbjct: 362 DANQAKDQFLAVLGHELRNPLTPISLALELIRNRDGQATPNE-----IAIIQRQLDHMVR 416

Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA 699
           +++DLLD+S+I  GK+ L  E V L + V  A+ +      ++R  +         R   
Sbjct: 417 LIDDLLDVSRITRGKITLKKEAVRLADIVDRAVEVASPLLEQRRHRLHVDTDPEA-RCHG 475

Query: 700 DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKP 759
           D   + Q+  N+L+NA  +T  GG I +     ++   ++ V D G G+    L+   +P
Sbjct: 476 DPVRLSQVVANLLTNAAKYTLPGGDIAVHAQRGADGSTLIEVHDNGAGIPPDRLQSIFEP 535

Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFP 809
           F +I    +    G G+GL L +++V+ + G     S  P +G+   I+ P
Sbjct: 536 FYRIDGDNKQAHGGLGIGLALVRSLVNLHGGTVRADSAGPGRGSTFTIVLP 586


>gi|260771432|ref|ZP_05880357.1| phosphate regulon sensor protein phoR [Vibrio furnissii CIP 102972]
 gi|260613558|gb|EEX38752.1| phosphate regulon sensor protein phoR [Vibrio furnissii CIP 102972]
          Length = 432

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 82/413 (19%), Positives = 157/413 (38%), Gaps = 36/413 (8%)

Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
             RL    W+ +            +         NGI       R  ++++   + +  +
Sbjct: 50  QMRLSAWLWDEKR-------LTPPSGSGNWEYLFNGIYRLQQRQRKKRKELTNLIRRFRN 102

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
             E+  D + +   EG I+  NR    L G+   D   +P +  +               
Sbjct: 103 GAESLPDAVVVFRGEGNIVWCNRLAQHLLGFRWPDDAGQPISNLIRTPDFIKYLQKDDFT 162

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKK 576
             L++R  L              SL + I        + + + D+++ KQ +        
Sbjct: 163 EPLEMRSPLNVER----------SLELRIVPYTEGE-HLMVVRDVTQLKQLEG------- 204

Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
                   + +F A VSHE+RTP+T + G+ E+   +    L  P + +    +    N 
Sbjct: 205 -------MRRNFFANVSHELRTPMTVLQGYLEM--TEDPDMLVGPMWGKAHVVMTEQLNR 255

Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696
           +  +VN LL +SKIE+  M+   + V +   +          + + +  ++      + R
Sbjct: 256 MNSLVNQLLTLSKIEAAPMHELEDVVDVPAMLEVLEKEAVSLSGDDQHQLKFDIDKQL-R 314

Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKA 756
           +LAD   ++    N++ NA+ +TP G +I +    T      L V D G G+    L + 
Sbjct: 315 VLADEDQLRSAISNLVYNAVKYTPPGAEINVRWFQTPQG-ACLEVADKGDGIEPQHLHRL 373

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            + F ++  ++     G+GLGL + K  +  +     I ST   G+    + P
Sbjct: 374 TERFYRVDKARSRDTGGSGLGLAIVKHALSHHDSHLEINSTVGVGSRFSFVLP 426


>gi|71282062|ref|YP_271129.1| sensor histidine kinase/response regulator [Colwellia
           psychrerythraea 34H]
 gi|71147802|gb|AAZ28275.1| sensor histidine kinase/response regulator [Colwellia
           psychrerythraea 34H]
          Length = 982

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 83/246 (33%), Positives = 128/246 (52%), Gaps = 6/246 (2%)

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           KQ  ++L       EK +  KS FLA +SHEIRTPLTAI+G +E I +     +   +  
Sbjct: 470 KQRTHELEDLTIELEKANQVKSQFLANMSHEIRTPLTAIVGHAEAIIHDD---IDKDKVH 526

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           E    I  +   +L+++ND+LD+S+IE+ K  L  +P+ L E + +        A +K++
Sbjct: 527 EDIEVIHGNSLHLLELINDILDLSRIEANKFELEVQPLDLAELIQDLSHTFTSQAQQKQL 586

Query: 685 LIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
                     P I   D   +KQI LN+ +NAI FT SG Q+++S T    EE++  V D
Sbjct: 587 DFTIEHQLPAPFIIHIDSLRLKQILLNLCANAIKFTESG-QVMLSIT-QQKEELVFTVTD 644

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TG+G++   L +  + F Q  NS   R  G+GLGL L+  +    +G   + S   KG+ 
Sbjct: 645 TGIGLSEEHLAQVFEIFTQADNSISRRFGGSGLGLTLSNQLAKLMLGNIEVTSELGKGSC 704

Query: 804 IEIIFP 809
             +  P
Sbjct: 705 FCLTLP 710


>gi|254477960|ref|ZP_05091345.1| sensor histidine kinase/response regulator [Ruegeria sp. R11]
 gi|214028545|gb|EEB69381.1| sensor histidine kinase/response regulator [Ruegeria sp. R11]
          Length = 760

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 80/266 (30%), Positives = 134/266 (50%), Gaps = 10/266 (3%)

Query: 555 SLTMHD-ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
              + D   E  + +  L  A+K A+  +  KS+FLA +SHEIRTP+  +IG +E+I   
Sbjct: 209 VGVLEDTFEERDEREFALEDARKAADIANRAKSEFLANMSHEIRTPMNGVIGMAELILET 268

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
                 +     YA  I +SG+ +L I+ND+L+ SKIE+GKM L   P +L  A+ + ++
Sbjct: 269 DL----DDDQKMYAETISKSGSALLTIINDILNFSKIEAGKMELDRAPFNLQTAIEDVVT 324

Query: 674 LVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
           L+   A EK + +   +   +P     D+  ++QI  NI  NA+ FT +G  + I  +  
Sbjct: 325 LLSPKAAEKNVEVTLRYDPGLPEFFEGDVGRIRQILTNIAGNAVKFTSAG-YVYIEVSGH 383

Query: 733 SNE---EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
           +     ++ + V+DTG G+   +L      F Q+  +     EGTGLGL ++  ++    
Sbjct: 384 TAGGYSDLRISVKDTGTGIPADQLNSIFNAFEQVDGAATRNFEGTGLGLAISTRLLGMMG 443

Query: 790 GKFYIFSTPAKGTLIEIIFPLYDTSH 815
           G   + S   +G+   +  PL    H
Sbjct: 444 GTVSVTSVLGEGSTFTVELPLKVREH 469


>gi|60682196|ref|YP_212340.1| putative two-component system histidne kinase/reponse regulator
           fusion protein [Bacteroides fragilis NCTC 9343]
 gi|60493630|emb|CAH08419.1| putative two-component system histidne kinase/reponse regulator
           fusion protein [Bacteroides fragilis NCTC 9343]
          Length = 1015

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 96/524 (18%), Positives = 189/524 (36%), Gaps = 64/524 (12%)

Query: 317 EGENLTPETVDKCPIPFF----------VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
           E        +D  P+ +           V         NP F     ++  D +      
Sbjct: 378 EAMANYKNLIDNMPLLYMQEKLIVNEQGVADDLIYLNVNPHFEKHF-FRREDVVGKR--A 434

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
           S L           +  + +   +   I        I                      +
Sbjct: 435 SELFPESL---PEFLHFIQISLKENRAITFPYYFKKIDR----------FYDIVLKGAHQ 481

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI----------AIINREGIILS 476
               +    +  +    ++K+     +L   LE  +D I           + +    I  
Sbjct: 482 ENVIDIFCVDSTELHRAQQKLNATNHKLSMALE-VADIIPWKWDLLSKTILCDINKPIEL 540

Query: 477 T---NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLG 531
           +   N    +    P      K     + +     +     +++   L +  E  ++   
Sbjct: 541 SAQGNNVSEEQLAVPDSQYFSK-----IYKEDRIRVEQAYKDLIEGRLEKVKEEYRVINI 595

Query: 532 STKEEKLLSLRI-IIKKLPFSSCYSLTM----HDISEWKQEKNKLSHAKKIAEKESSHKS 586
                K+  +      +    +   +T+      I+  K+ + +L+ AK  AE+ +  KS
Sbjct: 596 RNHTHKIEWVEAQAAVETRDENGIPVTLVGSSQVITGRKKMEMELTSAKDRAEESNRLKS 655

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
            FLA +SHEIRTPL AI+GFS ++ +            EY + I+ +  L+L +++D+LD
Sbjct: 656 AFLANMSHEIRTPLNAIVGFSGILASTEEEEEK----QEYVSIIENNNALLLQLISDILD 711

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706
           +SKIE+G +   +  + L+  + +  S ++L      + +       +  +  +   + Q
Sbjct: 712 LSKIEAGTLEFQYSDIELNTELKKLESTLKLKLKSDDVQLEFVPGLPVCPVCTEKNRLSQ 771

Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSNE-EVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           + +N+++NAI FT  G    I   +     E+   V DTG G+   + E     F ++ +
Sbjct: 772 LIINLVTNAIKFTSRGS---IRFGYEHRGKELYFYVTDTGCGIPKDKQESIFGRFVKLNS 828

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
                 +GTGLGL + + +V+   G   + S   KG+      P
Sbjct: 829 F----AQGTGLGLSICRTLVEHMGGHIGVDSEEGKGSTFWFSLP 868


>gi|186686852|ref|YP_001870045.1| PAS/PAC sensor signal transduction histidine kinase [Nostoc
           punctiforme PCC 73102]
 gi|186469204|gb|ACC85004.1| PAS/PAC sensor signal transduction histidine kinase [Nostoc
           punctiforme PCC 73102]
          Length = 708

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 94/613 (15%), Positives = 201/613 (32%), Gaps = 93/613 (15%)

Query: 272 QEDFHTINLNQYTKKQYFGT----LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
           +E F  ++     ++          +  +          +           E      + 
Sbjct: 88  EEQFQQVDGLTGWRQWTLRPWCSSTRVVNGVMLVAEDVTDRKQAELALRHSEERYRFLIT 147

Query: 328 KCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
                 +     G      P +   T     ++++  G L+ +    +L         + 
Sbjct: 148 AISQIIWDTKAEGEFINEQPGWSAFTGQT-FEELKGWGWLNAVHPDDRLHTAKVWSQAVA 206

Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
            R+           H ++ +      M+   F   N         G+  +  + +  +  
Sbjct: 207 SRTLYKL------EHRLRRHDGEYCHMSVRAFPILNPDGGIREWIGVHTDITEYKQAQEA 260

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
           M      L +I+E++ D I     +G+I+S NR    LFGY  ++++ +P  + +  +  
Sbjct: 261 ML----CLAAIVESSDDAIISKTLDGVIVSWNRGAEALFGYQAQEVIGQPMAMLVPGDRI 316

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDIS 562
           +     L ++      +     T+   K+  L+ L + I  +  S+   +       DIS
Sbjct: 317 NEEPQILKKLRQG--ERVDHFETVRQRKDGTLIDLSLTISPVKDSTGKIIGASKIARDIS 374

Query: 563 EWKQEKNKLSHA----------------KKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
             K  +  L                   + +  ++ S     +A V+HEI  P+  I   
Sbjct: 375 ARKDAQEALRQKAADLETTLLELKRTQTQLVQNEKMSSLGQLVAGVAHEINNPVNFIYAN 434

Query: 607 ----------------------------SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
                                        +    +           +    ++   + + 
Sbjct: 435 FKPANEYIQHLLGLLQLYQQHYPSPAPEIQGKSEEIDLEFLLEDLPKLLCSMEVGADRIK 494

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK----RILIRTSFANNI 694
            IV  L + S+++  +M      V++ E +   + ++Q     K     I I   +  N+
Sbjct: 495 KIVLSLRNFSRMDEAEMK----AVNIHEGIDSTLMILQNRLKAKHDHPGIEIIKEY-GNL 549

Query: 695 PRILADLRSVKQIALNILSNAIHFTPSG-------------GQIIISTTHTSNEEVILRV 741
           P +      + Q+ +NI+SNAI                    +I I T    ++ V +R+
Sbjct: 550 PLVECYAGQLNQVFMNIISNAIDALEEPHQSCTLQEIEQKTSEIRIFTAMVGSDHVQIRI 609

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV-DANMGKFYIFSTPAK 800
            D G G+  +  ++   PF          G+GTGLG+ ++  +V + + G     S P +
Sbjct: 610 VDNGPGIPEFVQKRLCDPFFTTKP----VGKGTGLGMSISYQIVTEKHGGSLRYHSIPGQ 665

Query: 801 GTLIEIIFPLYDT 813
           G    I  P+  +
Sbjct: 666 GAEFVIEIPIRQS 678



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 15/117 (12%), Positives = 36/117 (30%), Gaps = 5/117 (4%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG-KTTLW 150
            G +   +       G  A ++IG  +  +     I+    I   L++       +T   
Sbjct: 281 DGVIVSWNRGAEALFGYQAQEVIGQPMAMLVPGDRINEEPQILKKLRQGERVDHFETVRQ 340

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
             +GT + + + ++  P+     +  G     I        D +   ++        
Sbjct: 341 RKDGTLIDLSLTIS--PVKDSTGKIIGASK--IARDISARKDAQEALRQKAADLETT 393



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/248 (9%), Positives = 55/248 (22%), Gaps = 13/248 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQNTWY 144
            W+  A G             G    ++ G    +            +    +  +  + 
Sbjct: 153 IWDTKAEGEFINEQPGWSAFTGQTFEELKGWGWLNAVHPDDRLHTAKVWSQAVASRTLYK 212

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            +  L   +G   ++ +   A PI + +         G+          +     L    
Sbjct: 213 LEHRLRRHDGEYCHMSVR--AFPILNPDGGIR--EWIGVHTDITEYKQAQEAMLCLA--- 265

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHL--RMKNKVSSLTEYYAHKDDVLKTEKYPL- 261
             + E        +     I S       L      +V           D +  E   L 
Sbjct: 266 -AIVESSDDAIISKTLDGVIVSWNRGAEALFGYQAQEVIGQPMAMLVPGDRINEEPQILK 324

Query: 262 -LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
            L   E     +      +            +++++ +           S      E   
Sbjct: 325 KLRQGERVDHFETVRQRKDGTLIDLSLTISPVKDSTGKIIGASKIARDISARKDAQEALR 384

Query: 321 LTPETVDK 328
                ++ 
Sbjct: 385 QKAADLET 392



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 3/136 (2%)

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           S LE      AI++ E   L T++      G   +DI+ +       Q    +   Y   
Sbjct: 19  SFLENLPIAAAILDCEMKYLLTSQGWLSELGLEGQDIIGRSHLEVFRQFCEPLTQAY-QY 77

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIII--KKLPFSSCYSLTMHDISEWKQEKNKLSH 573
            L   +   +E+               +          +   L   D+++ KQ +  L H
Sbjct: 78  CLMAAVELCVEEQFQQVDGLTGWRQWTLRPWCSSTRVVNGVMLVAEDVTDRKQAELALRH 137

Query: 574 AKKIAEKESSHKSDFL 589
           +++      +  S  +
Sbjct: 138 SEERYRFLITAISQII 153


>gi|114777665|ref|ZP_01452625.1| multi-sensor hybrid histidine kinase [Mariprofundus ferrooxydans
           PV-1]
 gi|114551881|gb|EAU54415.1| multi-sensor hybrid histidine kinase [Mariprofundus ferrooxydans
           PV-1]
          Length = 763

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 93/553 (16%), Positives = 185/553 (33%), Gaps = 54/553 (9%)

Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLL 350
           +    +             L     + E      V+     F+V    G     N ++L 
Sbjct: 110 VDGEQRLISIVRDISERKHLDIALQDKERRYNALVETSADGFWVADSQGCFIEVNDAYLK 169

Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
            + Y   +               ++ D  A +     R     I +        W+R  S
Sbjct: 170 RSGYSREE-----------FLNMRIPDIEATETSDETRRHLAKIISKGYDRFETWHRTKS 218

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM---EIEVMQLCSILEATSDGIAI 467
             +  +                   +  +    ++++   + E+ +L   L+   +GI I
Sbjct: 219 GELWPVEIVTTFYPFNGGTFMVFAIDISERNRAQQEIAVQQKELSKLSQALQQAGEGIMI 278

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
            + +  I   N++ + + GY  +D++ K  ++   +     +   L + +S       E 
Sbjct: 279 TSPDATIEYINQSFTDITGYSAQDLIGKNTSILKSEAQDPSVYRELWQTISRGK--IWEG 336

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
             +   K+     + + I  +         +   M D++E K+ + +L  A+K+      
Sbjct: 337 GLIDRRKDGSFFPILLSIAPIIDEDGKIIHFVSIMKDVTELKKLEQQLLQAQKM-----E 391

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
                +  ++H+    L A+ G    +  +  G        +    I +  +    +V  
Sbjct: 392 SMGTLVGGIAHDFNNMLAALQGNV-FLATRNLG--DRQVVGKRLQTIHQLVSDASGVVKQ 448

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703
           LL  +K    K  +  E V L+  + +A  L +    E  I      +N I  + AD   
Sbjct: 449 LLTFAK----KDIVEIEAVELNTLIKDAFKLARSTIPE-NIDRSLHLSNEILPVNADKTQ 503

Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHT----------------SNEEVILRVRDTGVG 747
           ++Q+ +N+ +NA        Q  I  +                        + +RD G G
Sbjct: 504 LQQVMINLSNNARDALEKTKQPKIEWSLHKYQATPEFKKSHPETVEEHFARITIRDNGCG 563

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           +    LE    PF          G+GTGLGL +    ++ + G   + S   KGT   I 
Sbjct: 564 IKRIHLEAIFDPFFTTKEP----GKGTGLGLAMVFGSIERHGGVLDVESDIGKGTAFHIY 619

Query: 808 FPLYDTSHPHDCI 820
            PL   +  +D I
Sbjct: 620 LPLIQAAVVNDPI 632



 Score =  107 bits (268), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 41/378 (10%), Positives = 122/378 (32%), Gaps = 24/378 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN-HIGDLLKRQNTWYGKT 147
           I+  G + E +    + +G +  ++IG ++ ++         +  I D++ +      +T
Sbjct: 31  INHEGLIIECNPAFHQRLGYHKQEIIGKKVAELDTPEFAPKVSQRINDIISKGRAV-FET 89

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
             +  +G+   +P++++A  +Y  + E    R   IV             +  +++++ L
Sbjct: 90  AHYRKDGSI--MPVEISARIVY-VDGE---QRLISIVRDISERKHLDIALQDKERRYNAL 143

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
            E       V   +                 + +  ++        +     +  L    
Sbjct: 144 VETSADGFWVADSQGCFIEVNDAYLKRSGYSREEFLNMRIPDIEATETSDETRRHLAKII 203

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD-----EGEN 320
                  E +H     +    +   T    +  +F   +        A  +     +  +
Sbjct: 204 SKGYDRFETWHRTKSGELWPVEIVTTFYPFNGGTFMVFAIDISERNRAQQEIAVQQKELS 263

Query: 321 LTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
              + + +      + S    + Y N SF  +T Y + D I    G +T +   +  D +
Sbjct: 264 KLSQALQQAGEGIMITSPDATIEYINQSFTDITGYSAQDLI----GKNTSILKSEAQDPS 319

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
             + +    S              +    +   +        ++  + +    I  +  +
Sbjct: 320 VYRELWQTISRGKIWEGGLI---DRRKDGSFFPILLSIAPIIDEDGKIIHFVSIMKDVTE 376

Query: 440 TRINKRKMEIEVMQLCSI 457
            +  ++++ ++  ++ S+
Sbjct: 377 LKKLEQQL-LQAQKMESM 393



 Score = 83.9 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 51/144 (35%), Gaps = 12/144 (8%)

Query: 449 IEVMQLCSI-------LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
             + Q  SI        +   DG+ IIN EG+I+  N A  +  GY  ++I+ K      
Sbjct: 5   ERLSQFKSIGEIHSLLFDIMDDGVIIINHEGLIIECNPAFHQRLGYHKQEIIGKKVAELD 64

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII--IKKLPFSSCYSLTMH 559
                  ++  + +I+S          T    K+  ++ + I   I  +         + 
Sbjct: 65  TPEFAPKVSQRINDIISKGRAV---FETAHYRKDGSIMPVEISARIVYVDGEQRLISIVR 121

Query: 560 DISEWKQEKNKLSHAKKIAEKESS 583
           DISE K     L   ++       
Sbjct: 122 DISERKHLDIALQDKERRYNALVE 145



 Score = 48.5 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/240 (11%), Positives = 61/240 (25%), Gaps = 6/240 (2%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK 146
           W  D+ G   E+++   K  G    + + MR+ D+      D        +  +     +
Sbjct: 152 WVADSQGCFIEVNDAYLKRSGYSREEFLNMRIPDIEATETSDETRRHLAKIISKGYDRFE 211

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
           T      G    V I     P       F  F    I   NR   +     K L K    
Sbjct: 212 TWHRTKSGELWPVEIVTTFYPFNG--GTFMVF-AIDISERNRAQQEIAVQQKELSKLSQA 268

Query: 207 LHEIKKG-HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
           L +  +G   +      +  +Q            +          +    +    L  + 
Sbjct: 269 LQQAGEGIMITSPDATIEYINQSFTDITGYSAQDLIGKNTSILKSEAQDPSVYRELWQTI 328

Query: 266 ESSLPEQEDF--HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
                 +        + + +        + +   +   ++S     +     ++      
Sbjct: 329 SRGKIWEGGLIDRRKDGSFFPILLSIAPIIDEDGKIIHFVSIMKDVTELKKLEQQLLQAQ 388


>gi|53713997|ref|YP_099989.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
 gi|52216862|dbj|BAD49455.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
          Length = 1053

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 96/524 (18%), Positives = 189/524 (36%), Gaps = 64/524 (12%)

Query: 317 EGENLTPETVDKCPIPFF----------VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
           E        +D  P+ +           V         NP F     ++  D +      
Sbjct: 416 EAMANYKNLIDNMPLLYMQEKLIVNEQGVADDLIYLNVNPHFEKHF-FRREDVVGKR--A 472

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
           S L           +  + +   +   I        I                      +
Sbjct: 473 SELFPESL---PEFLHFIQISLKENRAITFPYYFKKIDR----------FYDIVLKGAHQ 519

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI----------AIINREGIILS 476
               +    +  +    ++K+     +L   LE  +D I           + +    I  
Sbjct: 520 ENVIDIFCVDSTELHRAQQKLNATNHKLSMALE-VADIIPWKWDLLSKTILCDINKPIEL 578

Query: 477 T---NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLG 531
           +   N    +    P      K     + +     +     +++   L +  E  ++   
Sbjct: 579 SAQGNNVSEEQLAVPDSQYFSK-----IYKEDRIRVEQAYKDLIEGRLEKVKEEYRVINI 633

Query: 532 STKEEKLLSLRI-IIKKLPFSSCYSLTM----HDISEWKQEKNKLSHAKKIAEKESSHKS 586
                K+  +      +    +   +T+      I+  K+ + +L+ AK  AE+ +  KS
Sbjct: 634 RNHTHKIEWVEAQAAVETRDENGIPVTLVGSSQVITGRKKMEMELTSAKDRAEESNRLKS 693

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
            FLA +SHEIRTPL AI+GFS ++ +            EY + I+ +  L+L +++D+LD
Sbjct: 694 AFLANMSHEIRTPLNAIVGFSGILASTEEEEEK----QEYVSIIENNNALLLQLISDILD 749

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706
           +SKIE+G +   +  + L+  + +  S ++L      + +       +  +  +   + Q
Sbjct: 750 LSKIEAGTLEFQYSDIELNTELKKLESTLKLKLKSDDVQLEFVPGLPVCPVCTEKNRLSQ 809

Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSNE-EVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           + +N+++NAI FT  G    I   +     E+   V DTG G+   + E     F ++ +
Sbjct: 810 LIINLVTNAIKFTSRGS---IRFGYEHRGKELYFYVTDTGCGIPKDKQESIFGRFVKLNS 866

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
                 +GTGLGL + + +V+   G   + S   KG+      P
Sbjct: 867 F----AQGTGLGLSICRTLVEHMGGHIGVDSEEGKGSTFWFSLP 906


>gi|320355087|ref|YP_004196426.1| PAS/PAC sensor hybrid histidine kinase [Desulfobulbus propionicus
           DSM 2032]
 gi|320123589|gb|ADW19135.1| PAS/PAC sensor hybrid histidine kinase [Desulfobulbus propionicus
           DSM 2032]
          Length = 777

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 83/457 (18%), Positives = 159/457 (34%), Gaps = 50/457 (10%)

Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN------ 443
           D             + N E    +     +  +     +            ++       
Sbjct: 197 DGKERDNYIEFFNKKINEEPCDDILNFFIKNKDNEKIPVQIQIDTALIGTRKVAQVMFYN 256

Query: 444 ---KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
              + KME     L + +E  ++ + I +  G I   N A  ++ GY   ++L K   + 
Sbjct: 257 MSNRFKMEEGRRLLATAVEQAAESVIITDIFGNIQYVNPAFEEVSGYSYPEVLGKNPRLL 316

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSL 556
               TP      +   ++               K   L      I  +  ++     Y  
Sbjct: 317 QSGETPPYQYKLMWAEIAKG--HVWRGTFTNKKKNGALYKEEATITPVRDNNGHIINYVA 374

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
              DI++    +N++  ++K+              V+H+    LTAI+G++E   +Q   
Sbjct: 375 VKRDITQHLILENQIRQSQKM-----QAIGTLAGGVAHDFNNILTAILGYAE--LSQGQC 427

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
           P  +  Y      I ++      +V+ +L  S+    +   +   + L   V E + L++
Sbjct: 428 PSDSLLYKN-LGEIVKASERAGQLVDQILQFSR----QGEKNVSSLQLGLIVKEVLKLLR 482

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP-SGGQIIIST------ 729
                  I + +  A N   + AD   + Q+ +N+ +NA       GG I +        
Sbjct: 483 ASLPA-NIELISDIAPNA-YVKADPTQMHQVIMNLCTNAYQALEGKGGAIHVRLYTRTLS 540

Query: 730 --------THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
                          V L+V DTGVG+    L++  +P+           EGTGLGL + 
Sbjct: 541 PKEGVEIGNLQHGSYVCLQVEDTGVGIPPEYLQRIFEPYFTTKKL----HEGTGLGLSVV 596

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
             +V+ + G   + S P KG+   +  P  + +   D
Sbjct: 597 HGIVNDHRGAVTVESIPGKGSCFTVFLP--EAAQEED 631



 Score = 46.6 bits (109), Expect = 0.017,   Method: Composition-based stats.
 Identities = 12/140 (8%), Positives = 36/140 (25%), Gaps = 5/140 (3%)

Query: 63  SNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS 122
           SN   ++     +   + +        D  G ++ ++    +  G    +++G     + 
Sbjct: 258 SNRFKMEEGRRLLATAVEQAAESVIITDIFGNIQYVNPAFEEVSGYSYPEVLGKNPRLLQ 317

Query: 123 DILHID-PNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF 181
                      +   + + + W G  T     G       +    P+   N     +   
Sbjct: 318 SGETPPYQYKLMWAEIAKGHVWRGTFTNKKKNGALYKE--EATITPVRDNNGHIINY--V 373

Query: 182 GIVHVNRVDNDPRALGKRLD 201
            +              ++  
Sbjct: 374 AVKRDITQHLILENQIRQSQ 393



 Score = 46.2 bits (108), Expect = 0.024,   Method: Composition-based stats.
 Identities = 19/184 (10%), Positives = 55/184 (29%), Gaps = 4/184 (2%)

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR-E 471
           + F          ++     +       +  ++     + +   +L++ ++ I I++   
Sbjct: 107 LFFNVKIDIFGEKQDYYALVLIENITSRKNFEKISTEFIEKYYLLLQSINEPIIIVDSFS 166

Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT-EILSLDLRQTLEKITL 530
           GIIL  N      F +    I+      F +         +   +I        L     
Sbjct: 167 GIILEANNHALDFFKFVHGGIVGTHHGDFYDGKERDNYIEFFNKKINEEPCDDILNFFIK 226

Query: 531 GSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH--KSDF 588
               E+  + ++I    +       +  +++S   + +          E+ +     +D 
Sbjct: 227 NKDNEKIPVQIQIDTALIGTRKVAQVMFYNMSNRFKMEEGRRLLATAVEQAAESVIITDI 286

Query: 589 LARV 592
              +
Sbjct: 287 FGNI 290


>gi|311748276|ref|ZP_07722061.1| PAS domain-containing protein [Algoriphagus sp. PR1]
 gi|126576771|gb|EAZ81019.1| PAS domain-containing protein [Algoriphagus sp. PR1]
          Length = 1140

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 97/375 (25%), Positives = 176/375 (46%), Gaps = 11/375 (2%)

Query: 441  RINKRKMEIEVMQLCSILEATSDG-IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
                ++ EI  +Q  ++  ++ DG I  ++ E  I++ N + + L    + ++ +     
Sbjct: 771  AKESKEKEIAEVQFKNVWSSSKDGLILTLDGE-KIVTANPSFANLVKKDISELEKSNVVD 829

Query: 500  FLEQNT-PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL-LSLRIIIKKLPFSSC--YS 555
                 +      +     +       L        K   + + +  ++ +  F       
Sbjct: 830  LFSDRSYFDKYVNSFARKVIKKSSAGLTFENSVPWKTGSVEMEVYSVLIQEDFQGRNLIL 889

Query: 556  LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
                DIS  K  + K+  AK+ AE+ + +K+  L+ +SHEIRTPL  I+G +E I     
Sbjct: 890  SVFRDISSKKAIEQKMRDAKEKAEQANRYKTSMLSNISHEIRTPLNGILGGTEHIM---M 946

Query: 616  GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
                NP  +   + I +SG  +L  +N +LD++KIE+ KM + +    ++E +   I+ +
Sbjct: 947  MNQDNPILLSQLDIIQQSGERLLSTINSILDMAKIEANKMQVVYSEADINEFLKSVIAPL 1006

Query: 676  QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
            +  A +K + + T F     +   D R ++ I  N++SNAI +T  GG I ++     N 
Sbjct: 1007 KNLALKKGLKLHTEFLQESFKGNIDKRFLEMIINNLVSNAIKYTDQGG-INVAVDKKKNN 1065

Query: 736  EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
             +++ V D+GVGM+   L KA +PF Q         EGTGLGL + K+++    G+ +I 
Sbjct: 1066 -LLISVEDSGVGMSEEFLNKAFQPFEQESTGNDRLYEGTGLGLNITKSLMALLNGEIHIQ 1124

Query: 796  STPAKGTLIEIIFPL 810
            S    GTL+ +  PL
Sbjct: 1125 SVKNSGTLVTLEIPL 1139


>gi|116750047|ref|YP_846734.1| multi-sensor signal transduction histidine kinase [Syntrophobacter
           fumaroxidans MPOB]
 gi|116699111|gb|ABK18299.1| multi-sensor signal transduction histidine kinase [Syntrophobacter
           fumaroxidans MPOB]
          Length = 610

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 100/638 (15%), Positives = 221/638 (34%), Gaps = 58/638 (9%)

Query: 180 GFGIVHVNRVDNDP-RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKN 238
           G   V      +     + +          ++K     +++        +          
Sbjct: 22  GVMSVRTVTQSSRAVERIFRENYDSVDASLKMKGAVERLDRAAEFSLWGEGAEAGHESGA 81

Query: 239 KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE 298
             +        +   +       LT         E    +        + F  L     E
Sbjct: 82  LTAEFERNLRFQQGNITLAGEHELT---------ERLTRLWETYRKDYEDFRRLPETDGE 132

Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVD 358
             ++  +R  P      D  + +    ++   +     +      AN +   L       
Sbjct: 133 RRDFYRNRLVPGSREIRDTVQRIADINLENM-LSVDGQARRQADEANRTMFALVVSGVGL 191

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
            +     ++  +  P      +++ +     D                      +   P 
Sbjct: 192 ALLFIALIAPFVVRPITGLTRSVREIQRGNLD----------------------LLVKPR 229

Query: 419 EKANQFPENMPQNGIEPEDVD-TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
            K          N +     +  R ++ ++        S L+  SD +A+ +  G +   
Sbjct: 230 SKDEIGRLAAAFNEMASSLREYRRTDRARLLRTQRATQSALDTLSDAVAVCSPAGEVELA 289

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
           N    ++F    E  + +           + +   +  +        ++   +    EE+
Sbjct: 290 NDTARRVFNLSPESTI-ESAGNEKIGELFARVRREMRAVRHQGYDSAIQ---VFREGEER 345

Query: 538 LLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
                 I            +L + D++  ++                  KS  ++ VSHE
Sbjct: 346 FYLPGGIPILDEDHQLAGITLVLTDVTGVRRLDEV--------------KSGLISTVSHE 391

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           ++TPLT++   + V+ +++ GPL NP+ +E         + +  I+ +LLDIS+IE+ + 
Sbjct: 392 LKTPLTSVRLAAHVLLSEKLGPL-NPKQVEILVAAREDSDRLYQIIENLLDISRIETDRS 450

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715
            +   PV  ++ V +A   ++    ++++ +      ++P +LA+   ++ +  N+LSNA
Sbjct: 451 KIRLSPVDTEQMVLQATDEMRSAYMDRKVTLVLDLPEDVPPVLAEAFYLESVFANLLSNA 510

Query: 716 IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           +  TP+GG++ +S      + V   V DTG G+    L    + F + P  ++ R   +G
Sbjct: 511 LRHTPAGGRVTVS-ARRKGDAVQFSVEDTGSGIPAESLPHVFEKFYRGPGREERRD--SG 567

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
           LGL +A+ +V+A+ G   + S P KG        + D+
Sbjct: 568 LGLAIAREIVEAHGGTIGVVSEPGKGARFTFTLSVADS 605


>gi|301162515|emb|CBW22061.1| putative two-component system sensor histidine kinase [Bacteroides
           fragilis 638R]
          Length = 870

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 87/527 (16%), Positives = 170/527 (32%), Gaps = 46/527 (8%)

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIE 361
           +  +    +        +               Y     + + N S L +      +   
Sbjct: 366 IHAQTRLLIQNRLVAQRDEFDNVFHSIRDGVITYDTDFRIHFTNRSLLKMLHLPKDEAAR 425

Query: 362 IAGGLST--LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
              GL    +              +    ++ + +         + +  +   ++     
Sbjct: 426 PYEGLPAGSIFKIYNNGKEILRPMLKQVVTEESSVVIPENSFMQEVHSGSYFPVSGEVVP 485

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE---------ATSDGIAIINR 470
                 +            D        E++       ++             G+     
Sbjct: 486 IRAH-GKITGMALSARNISDE-------EMQKRFFSMAVDESSIYPWQYNIRTGLFTF-P 536

Query: 471 EGIILSTNRAVSKLFGYPVED--ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528
            G +          FG+      I R      +  +            L+  L Q+    
Sbjct: 537 AGFLTR--------FGFAENKTIISRGEMDRMIHPDDQESAYEIFNRALA-GLSQSTRMS 587

Query: 529 TLGSTKEEKLLSLRIIIKKLPF-----SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
               + +            L                 I  +K  + +L+ A+  A +   
Sbjct: 588 FRQLSGDGNYEWWEYRTSVLAGLTTDTPYSILGVCQSIQRYKTTEEELTAARDKALQADK 647

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
            KS FLA +SHEIRTPL AI+GFS+++ +             +   I+++  L+L ++ND
Sbjct: 648 LKSAFLANMSHEIRTPLNAIVGFSDLLSDT--SGFTEEEVKLFIETINKNCGLLLALIND 705

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLR 702
           +LD+S+IESG M+  F   +L   +       +L      + +      N  + ++ D  
Sbjct: 706 ILDLSRIESGTMDFQFAGHNLPLLMKNVYDSQRLNMPP-GVQLVLKLPENSKKYLVTDNV 764

Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
            ++Q+  N+++NA+ FT  G  I    T        L V DTG G++   L    + F +
Sbjct: 765 RLQQVVNNLINNAVKFTTQGS-ITFGYTEEEPGYTSLFVEDTGKGISEDGLRHIFERFYK 823

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           + +      +G GLGL + + +V    G   + S    GT   +  P
Sbjct: 824 VDSFT----QGAGLGLSICQTIVGRLNGTITVTSEEGHGTRFTVRLP 866


>gi|229068657|ref|ZP_04201955.1| hypothetical protein bcere0025_8680 [Bacillus cereus F65185]
 gi|228714404|gb|EEL66281.1| hypothetical protein bcere0025_8680 [Bacillus cereus F65185]
          Length = 709

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 78/338 (23%), Positives = 149/338 (44%), Gaps = 18/338 (5%)

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            +D++++            +    +  +L      T E        + +   L++  ++L
Sbjct: 208 HQDLIQQTVDNLGLTIHSIMGRMRIQTLLHESQAMTEELQVQSEELQTQAEELQMQAEEL 267

Query: 549 PFSSCYSLTMHDISEWKQEK-----NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
             ++    +  + +E K        ++L        + S +KS+FLA +SHE+RTPL +I
Sbjct: 268 RTTNEQLESRTEEAEQKTADLQITKSELEEKASELLRSSKYKSEFLANMSHELRTPLNSI 327

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +  SE+++      L +    E A  I  SG  +L ++ND+LD+SK+E+GK+++ FE  +
Sbjct: 328 LLLSEMLRENHDNNLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDIIFEATN 386

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSG 722
           + +  +         A +K +      ++ IP +   D + ++QI  N+LSNA  FT  G
Sbjct: 387 ISDMAANMHQNFLHIAAQKNVEFTIEDSDTIPNLFYTDAKRIEQIIKNLLSNAFKFTEKG 446

Query: 723 GQ------IIISTTHTS-----NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
                   I  S           + + + V+DTG+G+   + +   + F Q   +   + 
Sbjct: 447 SVSLHFDSIETSNLSHDMQSISKDWITISVKDTGIGIAKEQHQLIFEAFQQADGATIRKY 506

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            GTGLGL + K       G   + S   +G+   +  P
Sbjct: 507 GGTGLGLSICKEFARLLGGWITLESNVGEGSTFTVYIP 544


>gi|218886949|ref|YP_002436270.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
            'Miyazaki F']
 gi|218757903|gb|ACL08802.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
            'Miyazaki F']
          Length = 1191

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 97/635 (15%), Positives = 205/635 (32%), Gaps = 58/635 (9%)

Query: 209  EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
            +               F         R + +                    P + S E++
Sbjct: 443  DADGRVRECNVAFERFFGVDREALLGRYEWQAGPEGVAMLRDASDSSLMHEPGVASYETT 502

Query: 269  LPEQE-DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
            LP  E   H+I +++ T +   G +       F+Y    +           E       +
Sbjct: 503  LPGPEGSPHSIIMHKATYRNSRGAVAGLVGVVFDY---TDRKKAEDRLRAAEEKYRSLFE 559

Query: 328  KCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDI--EIAGGLSTLLDAPKLS-DNNAIKP 383
              P+  F V   G+   ANP+   ++ + S   +    AG  + L DAP +S   +   P
Sbjct: 560  SSPLGIFRVTPEGDYLDANPAMARMSGFASPALLLASGAGTFARLHDAPDMSCAGSDSGP 619

Query: 384  VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
                    T I+      +++     ++ M      + ++        G   +    +  
Sbjct: 620  GT---GQDTVISFD---SSVERPGGGTVTMHLTMRPQRDEAGMVRHIEGYAEDITQRKAA 673

Query: 444  KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRKPFTVFLE 502
            +R +      L  +L+     +   +R+   +  N++     G    + +L +     L 
Sbjct: 674  ERALSASQRMLQLVLDNIPQFVYWKDRDLKYMGANKSFLGFVGLDSADALLGRTDEEVLP 733

Query: 503  QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--------- 553
                +   H+  E +    +   +     ++   + + L      L              
Sbjct: 734  SAEDAARVHHDDEAVVRSGQPRYQTKVTITSPGGEAVWLETNRVPLLSDRGSQAEGSGDD 793

Query: 554  ---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
                  T  D+++  + + +L  ++K+              +SH+    LT+II   E+ 
Sbjct: 794  VVGLLTTAEDVTQRIRLERQLLQSQKM-----EAIGTLAGGISHDFNNILTSIINSIELA 848

Query: 611  KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
             +       +           ++      +V  +L  S+       +      ++E ++E
Sbjct: 849  ISDI---AADSLTCNDLMRALKAAQRGSRLVKQILTFSRPSVEGFVI----TDINEVLTE 901

Query: 671  AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS-GGQIII-- 727
            A+ L++       I IR +         AD   + Q+ +N+ +N+       GG + +  
Sbjct: 902  ALVLIKASLPR-NIEIRKAIPPRPSVTRADPTQIHQVLMNLCTNSFQALRDTGGVLEVNL 960

Query: 728  -----------STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
                                + L V D G G+    ++K   PF         + EGTGL
Sbjct: 961  EQEMLSDERALELGMEPGCALRLTVADDGPGIAPEIVDKIFDPFFTTKG----KTEGTGL 1016

Query: 777  GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
            GL +   ++  + G   + S P + T  EI  P++
Sbjct: 1017 GLAVVHGIIKGHRGAVRVASVPWRRTEFEIYLPMH 1051



 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 31/289 (10%), Positives = 87/289 (30%), Gaps = 14/289 (4%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
             +     +  +     +D  PIP +     G +   N +F           +      +
Sbjct: 415 RRVEGKIKDQLSFLRSLMDTIPIPIYSKDADGRVRECNVAFERFFGVDREALLGRYEWQA 474

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
                  L D +    +            ++   T+     +  ++        N     
Sbjct: 475 GPEGVAMLRDASDSSLM-------HEPGVASYETTLPGPEGSPHSIIMHKATYRNSRGAV 527

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
               G+  +  D +  + ++     +  S+ E++  GI  +  EG  L  N A++++ G+
Sbjct: 528 AGLVGVVFDYTDRKKAEDRLRAAEEKYRSLFESSPLGIFRVTPEGDYLDANPAMARMSGF 587

Query: 488 PVEDILRKPFTVFLE--QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
               +L            + P +                +   +         +++ + +
Sbjct: 588 ASPALLLASGAGTFARLHDAPDMSCAGSDSGPGTGQDTVISFDSSVERPGGGTVTMHLTM 647

Query: 546 KKLPFSSCYSLTM----HDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
           +     +     +     DI++ K  +  LS ++++ +    +   F+ 
Sbjct: 648 RPQRDEAGMVRHIEGYAEDITQRKAAERALSASQRMLQLVLDNIPQFVY 696



 Score = 96.6 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/394 (10%), Positives = 96/394 (24%), Gaps = 31/394 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID-PNNHIGDLLKRQNTWY 144
            ++ DA G ++E +    +  G     ++G               +     L+       
Sbjct: 439 IYSKDADGRVRECNVAFERFFGVDREALLGRYEWQAGPEGVAMLRDASDSSLMHEPGVAS 498

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            +TTL   EG+     I +      +     +G    G+V             +  ++K+
Sbjct: 499 YETTLPGPEGSP--HSIIMHKATYRNSRGAVAGL--VGVVFDYTDRKKAEDRLRAAEEKY 554

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQS--------PPPHLRMKNKVSSLTEYYAHKDDVLKT 256
             L E           + D                P L + +   +    +   D     
Sbjct: 555 RSLFESSPLGIFRVTPEGDYLDANPAMARMSGFASPALLLASGAGTFARLHDAPDMSCAG 614

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
                 T +++ +              T        ++ +        +    +     +
Sbjct: 615 SDSGPGTGQDTVISFDSSVERPGGGTVTMHLTMRPQRDEAGMVRHIEGYAEDITQRKAAE 674

Query: 317 EG----ENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
                 + +    +D  P    +         AN SFL      S D +        L  
Sbjct: 675 RALSASQRMLQLVLDNIPQFVYWKDRDLKYMGANKSFLGFVGLDSADALLGRTDEEVLPS 734

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE--------KANQ 423
           A   +  +     ++               TI      ++ +                  
Sbjct: 735 AEDAARVHHDDEAVVRSGQPRYQ----TKVTITSPGGEAVWLETNRVPLLSDRGSQAEGS 790

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
             + +       +       +R++     ++ +I
Sbjct: 791 GDDVVGLLTTAEDVTQRIRLERQLLQS-QKMEAI 823



 Score = 75.4 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 21/151 (13%), Positives = 54/151 (35%), Gaps = 6/151 (3%)

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
           +    ++ R  + K++ ++  L S+++     I   + +G +   N A  + FG   E +
Sbjct: 407 LVMNILEKRRVEGKIKDQLSFLRSLMDTIPIPIYSKDADGRVRECNVAFERFFGVDREAL 466

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
           L + +         +++       L  +        T     E    S+ +       S 
Sbjct: 467 LGR-YEWQAGPEGVAMLRDASDSSLMHE-PGVASYETTLPGPEGSPHSIIMHKATYRNSR 524

Query: 553 CYSL----TMHDISEWKQEKNKLSHAKKIAE 579
                    + D ++ K+ +++L  A++   
Sbjct: 525 GAVAGLVGVVFDYTDRKKAEDRLRAAEEKYR 555



 Score = 40.8 bits (94), Expect = 0.91,   Method: Composition-based stats.
 Identities = 35/305 (11%), Positives = 79/305 (25%), Gaps = 11/305 (3%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGN-YAFKMIGMRLCDVSD-ILHIDPNNHIGDLLKRQNT 142
           F +  D        ++     +G   A  ++G    +V          +H  + + R   
Sbjct: 694 FVYWKDRDLKYMGANKSFLGFVGLDSADALLGRTDEEVLPSAEDAARVHHDDEAVVRSGQ 753

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNR---EFSGFRGFGIVHVNRVDNDPRALGKR 199
              +T +         V ++   +P+ S      E SG    G++           L ++
Sbjct: 754 PRYQTKVTITSPGGEAVWLETNRVPLLSDRGSQAEGSGDDVVGLLTTAEDVTQRIRLERQ 813

Query: 200 -LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
            L  +         G  S +          S    +      S             +   
Sbjct: 814 LLQSQKMEAIGTLAGGISHDFNNILTSIINSIELAISDIAADSLTCNDLMRALKAAQRGS 873

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
             +      S P  E F   ++N+   +       +  +      +    PS++      
Sbjct: 874 RLVKQILTFSRPSVEGFVITDINEVLTEALVLIKASLPRNIEIRKAIPPRPSVT---RAD 930

Query: 319 ENLTPETVDKC--PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
                + +          +   G +   N    +L+  ++++     G    L  A    
Sbjct: 931 PTQIHQVLMNLCTNSFQALRDTGGVLEVNLEQEMLSDERALELGMEPGCALRLTVADDGP 990

Query: 377 DNNAI 381
                
Sbjct: 991 GIAPE 995


>gi|209886245|ref|YP_002290102.1| sensor protein FixL [Oligotropha carboxidovorans OM5]
 gi|209874441|gb|ACI94237.1| sensor protein FixL [Oligotropha carboxidovorans OM5]
          Length = 507

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 80/520 (15%), Positives = 193/520 (37%), Gaps = 34/520 (6%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
           P+        ++L    ++   I  + +         +P+   L      + I+    LS
Sbjct: 2   PAQIPPASSFDDLLQLGLEGSDIGTWDLNLENRELTLSPTTRKLFGVSPDESIDYPRFLS 61

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
            L            + +    +  T      R+   +     +  +        +     
Sbjct: 62  LL---DPEDRERTERAIEQSIATGTNFDIQYRIAATR---GTAHWVRTRSAVVKSASG-A 114

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
           +   GI  +  + +  +  + I    L S+L+   D + +I+ +GI+   + A  + FGY
Sbjct: 115 LHLCGIVIDIDEQKQLEAALRIREGHLRSVLDTVPDAMIVIDGQGIMQFFSSAAVRQFGY 174

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT--LEKITLGSTKEEKLLSLRIII 545
              + + +  ++ +     +  + Y+    +   R    + +I  G  K+  +  + + I
Sbjct: 175 TEREAIGQNVSILMPYPDSARHDSYIARYRTTGERHIIGIGRIVSGKRKDGTIFPMHLSI 234

Query: 546 KKL--PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS--HKSDFLARVSHEIRTPLT 601
            ++       ++  + D++E++Q + ++   +      S      +  + ++HE+  PL 
Sbjct: 235 GEMQTEGEPYFTGFVRDLTEYQQTQARMQELQSELVHVSRLTAMGEMASALAHELNQPLA 294

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIE----YANYIDRSGNLVLDIVNDLLDI-SKIESGKMN 656
           AI  + +   ++R                 +           I+  L +  S+ ES K  
Sbjct: 295 AISNYMKG--SRRLLAADTEENRHKIESAMDRAAEQAIRAGQIIRRLREFVSRGESEKRV 352

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716
                    + + EA +L    A E+ + +      +   +L D   ++Q+ +N+  NA+
Sbjct: 353 EKA-----SKLIEEAGALGLTGAREQGVSLHFHLDPDHDLVLVDRVQIQQVLVNLFRNAL 407

Query: 717 HFTPSGGQ--IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
                  Q  +++++T  +N+ + + V DTG G+      +  + F     +      G 
Sbjct: 408 DAMTESAQRTLVVTSTRATNDMIEIAVSDTGHGIGKEHQPRMFQTFFTTKKN------GM 461

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           G+GL +++ +V+A+ G+ +  + PA G       P   T 
Sbjct: 462 GVGLSISRTIVEAHGGRMWTENNPAGGATFRFTLPAAPTE 501



 Score = 42.7 bits (99), Expect = 0.23,   Method: Composition-based stats.
 Identities = 37/395 (9%), Positives = 98/395 (24%), Gaps = 25/395 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMR-LCDVSDILHIDP-NNHIGDLLKRQNTW 143
           TW+++       +S    K  G    + I       + D    +     I   +     +
Sbjct: 26  TWDLNLENRELTLSPTTRKLFGVSPDESIDYPRFLSLLDPEDRERTERAIEQSIATGTNF 85

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +  +    GT     +   +  + S +         GIV          A  +  +  
Sbjct: 86  DIQYRIAATRGTA--HWVRTRSAVVKSASGAL---HLCGIVIDIDEQKQLEAALRIREGH 140

Query: 204 FSHLHEIKKGHSSVEK----------EKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253
              + +       V                 F         +  + +    +   H   +
Sbjct: 141 LRSVLDTVPDAMIVIDGQGIMQFFSSAAVRQFGYTEREAIGQNVSILMPYPDSARHDSYI 200

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
            +             +         +   +      G +Q   +  F     R+      
Sbjct: 201 ARYRTTGER--HIIGIGRIVSGKRKDGTIFPMHLSIGEMQTEGEPYFTGF-VRDLTEYQQ 257

Query: 314 YFDEGENLTPETVDKCPIPFFVYSHGNLFY-ANPSFLLLT----KYKSVDDIEIAGGLST 368
                + L  E V    +         L +  N     ++      + +   +       
Sbjct: 258 TQARMQELQSELVHVSRLTAMGEMASALAHELNQPLAAISNYMKGSRRLLAADTEENRHK 317

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
           +  A   +   AI+   + R  R  ++       ++   +       +    A +   ++
Sbjct: 318 IESAMDRAAEQAIRAGQIIRRLREFVSRGESEKRVEKASKLIEEAGALGLTGAREQGVSL 377

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
             +     D+      +  ++ V    + L+A ++
Sbjct: 378 HFHLDPDHDLVLVDRVQIQQVLVNLFRNALDAMTE 412


>gi|156975786|ref|YP_001446693.1| hybrid sensory histidine kinase BarA [Vibrio harveyi ATCC BAA-1116]
 gi|156527380|gb|ABU72466.1| hypothetical protein VIBHAR_03530 [Vibrio harveyi ATCC BAA-1116]
          Length = 932

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 83/251 (33%), Positives = 134/251 (53%), Gaps = 8/251 (3%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  AKK A++ +  KS+FLA +SHE+RTPL  +IGF+  +   +          +Y   
Sbjct: 276 ELDIAKKRAQEAARVKSEFLANMSHELRTPLNGVIGFTRQMLKTQLSN----SQTDYLQT 331

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I++S N +L+I+ND+LD SK+E+GK+ L   P    E++ E I+L    A+EK + I   
Sbjct: 332 IEKSANNLLNIINDILDFSKLEAGKLALENIPFEFRESLEEVINLQATSAHEKGLEITLK 391

Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVILR--VRDTG 745
               IP+ ++ D   ++QI  N++ N+I FT  G   I +     S + V L+  VRDTG
Sbjct: 392 VDPKIPQGLVGDPLRIQQILTNLVGNSIKFTERGNIDISVEIRSQSGDSVELQFMVRDTG 451

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G++  +  +  + F Q   S   R  GTGLGL + + +V    G+  + S   +G+   
Sbjct: 452 IGISERQQAQLFQAFSQADASISRRYGGTGLGLVITQKLVSQMGGEISLTSRLHQGSTFW 511

Query: 806 IIFPLYDTSHP 816
               L+ T  P
Sbjct: 512 FTVRLHSTEMP 522


>gi|15596125|ref|NP_249619.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PAO1]
 gi|107100384|ref|ZP_01364302.1| hypothetical protein PaerPA_01001409 [Pseudomonas aeruginosa PACS2]
 gi|116048851|ref|YP_792348.1| sensor/response regulator hybrid [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218893103|ref|YP_002441972.1| sensor/response regulator hybrid [Pseudomonas aeruginosa LESB58]
 gi|254239279|ref|ZP_04932602.1| sensor/response regulator hybrid [Pseudomonas aeruginosa C3719]
 gi|254245212|ref|ZP_04938534.1| sensor/response regulator hybrid [Pseudomonas aeruginosa 2192]
 gi|296390719|ref|ZP_06880194.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PAb1]
 gi|9946832|gb|AAG04317.1|AE004527_4 sensor/response regulator hybrid [Pseudomonas aeruginosa PAO1]
 gi|2623815|gb|AAB86557.1| two component sensor [Pseudomonas aeruginosa PAO1]
 gi|115584072|gb|ABJ10087.1| sensor/response regulator hybrid [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126171210|gb|EAZ56721.1| sensor/response regulator hybrid [Pseudomonas aeruginosa C3719]
 gi|126198590|gb|EAZ62653.1| sensor/response regulator hybrid [Pseudomonas aeruginosa 2192]
 gi|218773331|emb|CAW29143.1| sensor/response regulator hybrid [Pseudomonas aeruginosa LESB58]
          Length = 925

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 81/254 (31%), Positives = 142/254 (55%), Gaps = 10/254 (3%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  A+K A + S  KS+FLA +SHEIRTPL  I+GF+ +++     P    R  +Y   
Sbjct: 269 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTNLLQKSELSP----RQQDYLTT 324

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I +S   +L I+N++LD SKIE+GK+ L   P +L + + +A++++   A+EK++ + + 
Sbjct: 325 IQKSAESLLGIINEILDFSKIEAGKLVLENLPFNLRDLIQDALTMLAPAAHEKQLELVSL 384

Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN----EEVILRVRDT 744
              + P ++  D + +KQI  N++ NAI FT  GG + +            ++ + V+DT
Sbjct: 385 VYRDTPIQLQGDPQRLKQILTNLVGNAIKFT-QGGTVAVRAMLEDESDDRAQLRISVQDT 443

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G++  + +   K F Q  NS   +  GTGLGL ++K +++   G+  + STP +G   
Sbjct: 444 GIGLSEEDQQALFKAFSQADNSLSRQAGGTGLGLVISKRLIEQMGGEIGVDSTPGEGAEF 503

Query: 805 EIIFPLYDTSHPHD 818
            I   L  +   ++
Sbjct: 504 WISLSLPKSRDDNE 517


>gi|309789879|ref|ZP_07684457.1| PAS/PAC sensor signal transduction histidine kinase [Oscillochloris
           trichoides DG6]
 gi|308228086|gb|EFO81736.1| PAS/PAC sensor signal transduction histidine kinase [Oscillochloris
           trichoides DG6]
          Length = 385

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 70/349 (20%), Positives = 150/349 (42%), Gaps = 34/349 (9%)

Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528
           +++  +   + A  ++ G     + +   T+  +    +++   L +    ++       
Sbjct: 65  DQQRHLRFVSPAAMQMLGVNEPSLHQGMITIMRDHQADTLVGEVLHDGEPREMS------ 118

Query: 529 TLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
            +      + L L     +        L + D+++    +                + D 
Sbjct: 119 -MRPISSGRTLRLYASPLQ---GGGALLIIRDVTQLSMLE--------------RSRRDL 160

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
           +A VSHE+RTPL ++    E +++     + +         + +  + V  +V++L D++
Sbjct: 161 VANVSHELRTPLASLKLLVETVQSSPPPDVAH----RMLEQMAQEIDSVTQLVDELHDLA 216

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIA 708
           +IESG+++L   P+ +   +  A+  ++  A+ K + +     N    +L D   V QI 
Sbjct: 217 QIESGRVSLKLAPLPIGPVIERALERMRPQADRKGLTLGAEVPNGAQAVLMDPNRVGQIL 276

Query: 709 LNILSNAIHFTPSGGQIIISTTH------TSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
           LN+L NAI FT  GG + I           +   +++ V DTGVG+   +L +  + F +
Sbjct: 277 LNLLHNAIKFTAEGGSVQIRVRLVGEDAGQAGPWLLVSVCDTGVGIPATDLPRIFERFYK 336

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
           +  ++     GTGLGL +AK +V+ + G+ +  S   +G+      P+ 
Sbjct: 337 VDRARTRHAGGTGLGLAIAKHLVEGHGGRLWAESVEGRGSTFAFTLPVA 385


>gi|254883253|ref|ZP_05255963.1| two-component system sensor histidine kinase [Bacteroides sp.
           4_3_47FAA]
 gi|319642628|ref|ZP_07997274.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_40A]
 gi|254836046|gb|EET16355.1| two-component system sensor histidine kinase [Bacteroides sp.
           4_3_47FAA]
 gi|317385716|gb|EFV66649.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_40A]
          Length = 554

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 88/378 (23%), Positives = 161/378 (42%), Gaps = 39/378 (10%)

Query: 456 SILEATSDGIAIINREGIILSTN-------------RAVSKLFGYP---VEDILRKPFTV 499
           +IL      I +++R  ++  TN             R V +L                  
Sbjct: 47  TILYNVDAYIILVDRNFLVEKTNYYNLNNTSEGQVLRRVGELLRCKNGLDAGACGSHENC 106

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE------EKLLSLRIIIKKLPFSSC 553
            +     S+   +            LE        E      + ++ +     +L     
Sbjct: 107 KVCPVRNSIEKCF----REKGHFSPLETPMRLYMSEKMDNYVDCIVCVSGTYLQLDQDDK 162

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
             LT+ D++  K+  ++L  A++ AE     K+ FLA +SHEIRTPL AI+GF+ ++   
Sbjct: 163 VLLTVRDVTRQKKILDELEEARRNAELAGEQKTAFLANMSHEIRTPLNAIVGFAGLL--- 219

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
             G   +   I Y   I  + N++L +VND+LD+SKIE+G +   +  V +++ + E   
Sbjct: 220 --GTASDQDRISYVEIIKGNTNMLLQLVNDILDMSKIEAGTLEFIYTDVDVNQIMRELEG 277

Query: 674 LVQLYANEKRILIRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
           + +L   E  + +R  F   +P   I  +   + Q+  N LSNA  +T  G  I +    
Sbjct: 278 IFRLRLEEADVPVRIIFEPKLPVCFIHTEKNRISQVISNFLSNAFKYTVQGS-ITMGYEI 336

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
             N  +   V DTG G+   ++ +  + F ++      + +GTGLGL +++ ++    G+
Sbjct: 337 RENG-ICFYVSDTGTGIPEDKVSQVFERFTKLDA----KRQGTGLGLSISRTIIKKMGGE 391

Query: 792 FYIFSTPAKGTLIEIIFP 809
             + S   +G+    + P
Sbjct: 392 IGVTSKYGEGSTFWFVLP 409


>gi|83645119|ref|YP_433554.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83633162|gb|ABC29129.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 797

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 78/258 (30%), Positives = 128/258 (49%), Gaps = 9/258 (3%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  +  + L  AK+ A   +  ++DFLA +SHEIRTP   ++G   +   +      + +
Sbjct: 270 QLIKSNHDLRVAKEEAVSRAKARADFLANMSHEIRTPFNGVLGMISLTLEEPL----SEK 325

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             E  N    SG  +L+++ND+LDISK+E+GK+ L      L + V +   L+   A+ K
Sbjct: 326 QKEQLNVAYSSGVALLELLNDILDISKVEAGKLTLENIAFDLRKTVEDVSRLLAQNAHAK 385

Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
            + + T+     P  +  D   ++QI  N+  NAI FT +G  + +S +   N+ V + V
Sbjct: 386 NVALYTNIDPAFPERVYGDPTRIRQIVSNLTGNAIKFTETGS-VTVSLSLLKNQSVEICV 444

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            DTG+G+    LE    PF Q       +  GTGLGL L + +V    GK  + S   +G
Sbjct: 445 SDTGIGIEADRLEFIFSPFSQGDADITRKYGGTGLGLTLCRQLVTHMGGKIEVVSERGRG 504

Query: 802 TLIEIIFPL---YDTSHP 816
           +   +  PL   ++T  P
Sbjct: 505 SSFMVTLPLLADHNTPSP 522


>gi|17230717|ref|NP_487265.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120]
 gi|17132320|dbj|BAB74924.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120]
          Length = 986

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 122/811 (15%), Positives = 250/811 (30%), Gaps = 101/811 (12%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144
           F    D       +S    + I     ++        +     D       +     T  
Sbjct: 194 FCLKPDGTMTFPYVSSGCLELIECSPQELQDDASLTFASTYPEDIIGLQEAIANSAKTLQ 253

Query: 145 GKTTLWPIEGTNLYV-PIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                W I  ++  +  +  A+ P      E +    +G +             K+ D++
Sbjct: 254 NFEHEWRIITSSGQLKWVKGASRPERKPGGEIT---WYGYLLDVSEQQAALRERKQADQQ 310

Query: 204 FSHLHEIKKG----------HSSVEKEKYDIFSQQSPPPHLRMK----NKVSSLTEYYAH 249
                ++ +              V  ++ +    Q  P   R+           T   A 
Sbjct: 311 LQQQAQLLQSIWEGVDYGIFVLDVLDDEAEFRYVQINPAMYRISPVPLESFIGKTTAEAL 370

Query: 250 KDDVLKTEKYPLLTSEES--SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
             ++    +       +S  SL  ++DF  +N  +         L +++    + +    
Sbjct: 371 PPEIASLYRQRYQQCIQSKKSLFFEDDFL-VNDKETWWLINITPLGDSNSRISQLIVTAT 429

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
             +     ++   L    ++       F    G   + N + L L    S+D ++    +
Sbjct: 430 EITERKQAEQERQLFVSLIENSSDFIGFATLAGKPLFLNEAGLKLVGLDSLDALKNLHIM 489

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
                     D   +   ++   +   +             E       +   K ++  +
Sbjct: 490 DFFFPE----DQQYMDKHVMRVVNERGLWQGEYRFRDHQTNEAIPVDFNMFTVKNSETGK 545

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN----REGIILSTNRAVS 482
            +    +  +  + +  +  ++ +   L +I E     I +++     +      N    
Sbjct: 546 PLCLATVTRDIRERKKVEALLQEQEQFLRNIYEGVDQIIFVVDVLENLDFCYTGWNSTAE 605

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
           K  G    D + K            V+       +   +  + E   L    +E     +
Sbjct: 606 KYTGISRNDAIGKAPEDIFGSIEGVVVRQRYKNCVEAGVSISFE-ECLTVNNQETWWLTK 664

Query: 543 IIIKKLPFSSCYSLTMH--DISEWKQEKNKLSHAKKIAEKESSHK--------------- 585
           I   K      Y L     DI++ KQ + +L    +  E                     
Sbjct: 665 INPLKNSSGRIYCLVGTTLDITQRKQVEIQLQQQAENLENTLRELQLTQTQLIHSEKMSS 724

Query: 586 -SDFLARVSHEIRTPLTAIIG-------FSEVIKN-----QRFGPLGNPRYIEY------ 626
             + +A V+HEI  P+  I G       +++ +       +   P       E       
Sbjct: 725 IGNMVAGVAHEINNPVNFIHGNLIPASEYAQDLLQLVELYRLHFPYPPEEIQELIIDIDF 784

Query: 627 ----------ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
                        +      + +IV  L + S+++       F+ V + E +   + ++Q
Sbjct: 785 DFLKEDLVKLLQSMRIGTQRIREIVLSLRNFSRLD----EAEFKQVDIHEGIDSTLMILQ 840

Query: 677 LYANEK----RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS---GGQ----- 724
                K     IL+   +  ++P I      + Q+ +N++SNAI        GGQ     
Sbjct: 841 NRLKAKSDHPEILVVKDY-GDLPLIDCYPGQLNQVFMNLISNAIDALDESVIGGQLSVAT 899

Query: 725 --IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
             I I +   +N  V + + D GVG+    L K   PF    +     G+GTGLGL ++ 
Sbjct: 900 PTICIRSEMFNNNLVRITISDNGVGIPPEILSKLFDPFFTTKS----VGKGTGLGLSISY 955

Query: 783 AM-VDANMGKFYIFSTPAKGTLIEIIFPLYD 812
            + VD + GK    STP +G    I  P++ 
Sbjct: 956 QIVVDRHNGKLSCNSTPGQGAEFVIEIPIHQ 986



 Score = 90.9 bits (224), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 61/543 (11%), Positives = 136/543 (25%), Gaps = 69/543 (12%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D        S    +        ++G     V   + +   N     L        + TL
Sbjct: 63  DREMRYLLASRRWREDYNLGDENIVGRFHHHVCPEITLGWQNRYERCLAGNTEKSEEETL 122

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNR-----VDNDPRALGKRLDKKF 204
              +GT  +V  ++ +   Y  + E  G      V   R        D     +  + + 
Sbjct: 123 IRRDGTIDWVKWEINSW--YEVSGEVGGLAVVSEVITARKQSEMALADSERRLRETEARL 180

Query: 205 SHLHEIKKGHS----------------------SVEKEKYDIFSQQSPPPHLRMKNKVSS 242
             L +   G                         +E    ++    S          +  
Sbjct: 181 QRLADNLPGMLYEFCLKPDGTMTFPYVSSGCLELIECSPQELQDDASLTFASTYPEDIIG 240

Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302
           L E  A+    L+  ++       +S  + +     +  +                S + 
Sbjct: 241 LQEAIANSAKTLQNFEHEWR--IITSSGQLKWVKGASRPERKPGGEITWYGYLLDVSEQQ 298

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS------HGNLFYANPSFLLLTKYKS 356
            + R          +   L     +      FV               NP+   ++    
Sbjct: 299 AALRERKQADQQLQQQAQLLQSIWEGVDYGIFVLDVLDDEAEFRYVQINPAMYRISPV-P 357

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
           ++          L       +  ++      +  ++  +       +  ++E    +   
Sbjct: 358 LESFIGKTTAEAL-----PPEIASLYRQRYQQCIQSKKSLFFEDDFLVNDKETWWLINIT 412

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476
           P    +             E  + +      E E     S++E +SD I      G  L 
Sbjct: 413 PL--GDSNSRISQLIVTATEITERKQA----EQERQLFVSLIENSSDFIGFATLAGKPLF 466

Query: 477 TNRAVSKLFGYPV-EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
            N A  KL G    + +       F        M+ ++  +++       +        +
Sbjct: 467 LNEAGLKLVGLDSLDALKNLHIMDFFFPEDQQYMDKHVMRVVNER--GLWQGEYRFRDHQ 524

Query: 536 -EKLLSLRIIIKKLPFSSC-----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
             + + +   +  +  S        +    DI E K+ +  L             +  FL
Sbjct: 525 TNEAIPVDFNMFTVKNSETGKPLCLATVTRDIRERKKVEALL-----------QEQEQFL 573

Query: 590 ARV 592
             +
Sbjct: 574 RNI 576


>gi|225852106|ref|YP_002732339.1| integral membrane sensor signal transduction histidine kinase
           [Brucella melitensis ATCC 23457]
 gi|256264384|ref|ZP_05466916.1| sensor histidine kinase [Brucella melitensis bv. 2 str. 63/9]
 gi|225640471|gb|ACO00385.1| integral membrane sensor signal transduction histidine kinase
           [Brucella melitensis ATCC 23457]
 gi|263094678|gb|EEZ18457.1| sensor histidine kinase [Brucella melitensis bv. 2 str. 63/9]
 gi|326408601|gb|ADZ65666.1| integral membrane sensor signal transduction histidine kinase
           [Brucella melitensis M28]
 gi|326538322|gb|ADZ86537.1| integral membrane sensor signal transduction histidine kinase
           [Brucella melitensis M5-90]
          Length = 609

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 92/349 (26%), Positives = 168/349 (48%), Gaps = 4/349 (1%)

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
             ++ EGI+ S +   +KL G   + +        +           L ++ +    + +
Sbjct: 211 FGLDIEGIVSSVDGETAKLLGVQPKMLEGTALIDRVHVADRVQYLSLLADLRAGMATRKV 270

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
           +            +      +        +L    +   ++  ++++  K   E E   K
Sbjct: 271 DVRLRSIE-NGNPVFRAYRFEGAGSDRAITLIGRSLEGEQKLLDEIAMLKAELESERIGK 329

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
              LA VSHE+RTPL +IIGFS+++ ++  G L + R  EYA  I +SG+ +L++VN +L
Sbjct: 330 GRLLATVSHELRTPLNSIIGFSDMLTHEIGGKLASDRQREYAGLIHQSGHYLLELVNAVL 389

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
           D S++E+G  ++  +     +AV    +++   A +K +       N +  ++AD R+V+
Sbjct: 390 DNSRLETGTYSIAPQSFVFRDAVEMCTAVMLPQAEKKGVDFCHRVGNGVGELVADRRAVQ 449

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNE---EVILRVRDTGVGMTNYELEKAMKPFGQ 762
           QI LN+ +NA+ FT SGG + I       +    +   V DTG+G+   +L++   PF +
Sbjct: 450 QILLNLATNAVKFTQSGGCVTIDAARVMADGCPMLEFSVSDTGIGIEPEDLQRIGTPFVR 509

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
             NS     EG+GLGL + K +V+ + G   + S P +GT++ I  PL 
Sbjct: 510 AGNSYTQAQEGSGLGLSVVKGLVERHQGSMQLKSRPGEGTVVMIRLPLA 558


>gi|313204634|ref|YP_004043291.1| multi-sensor hybrid histidine kinase [Paludibacter propionicigenes
           WB4]
 gi|312443950|gb|ADQ80306.1| multi-sensor hybrid histidine kinase [Paludibacter propionicigenes
           WB4]
          Length = 1000

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 70/248 (28%), Positives = 125/248 (50%), Gaps = 3/248 (1%)

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           SE  ++  +L   K    + S  K++FL+ +SHE+RTPL ++I  S V+  +    +   
Sbjct: 463 SELAEQNRELEMQKIQLHEASRLKTNFLSNMSHELRTPLNSVIALSGVLSRRLNEKIPAD 522

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
               Y   I+R+G  +L ++ND+LDIS+IESG+  +      ++E V++ +S+++  A +
Sbjct: 523 EL-SYLEVIERNGKHLLSLINDILDISRIESGREEVDVSKFIVEELVTDIVSIIKPQAQQ 581

Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
           K I +  +  +    I +D+   + I  N++ NA+ FT  G  + I    T N  + + V
Sbjct: 582 KNIDLIKATISKDIVITSDIDKCRHILQNLVGNAVKFTEKGS-VSIDVVKTQNA-IEISV 639

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            DTG+G+    ++     F Q       +  GTGLGL +AK   +   G   + S   +G
Sbjct: 640 TDTGIGIAESNIDHIFDEFRQADGGTSRKFGGTGLGLAIAKKYANLLGGTVTVKSILGEG 699

Query: 802 TLIEIIFP 809
           +   +  P
Sbjct: 700 STFTLSLP 707


>gi|254780903|ref|YP_003065316.1| two-component sensor histidine kinase protein [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|254040580|gb|ACT57376.1| two-component sensor histidine kinase protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 766

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 115/452 (25%), Positives = 204/452 (45%), Gaps = 31/452 (6%)

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
                   +    ++  ++      + +              M   GI  +  +    ++
Sbjct: 317 ARSVTGKHVKQLDQIFHMRHASGADIWIQVRAQMMRTISG-GMNIIGIAMDLTEKYHLEK 375

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           +      +L   +E TS+ + + ++   ++  N    K +G P   ++       ++   
Sbjct: 376 RYAEADQRLSKAIECTSEALVLWDKNDRLVMCNANYQKAYGLPDHVLVPGNARSIIQDAQ 435

Query: 506 PSVMNHYLTEILSLDLRQTLEKIT---------LGSTKEEKLLSLRIIIKKLPFSSCYS- 555
              +  Y T         + E               T +   +S+   I  L  +     
Sbjct: 436 TRPIIEYRTSDPERSQDMSKEIKLADSRWLQINEWCTHDGGTISVGTDITLLKHNQAQLR 495

Query: 556 -------LTMHDIS------EWKQEK-----NKLSHAKKIAEKESSHKSDFLARVSHEIR 597
                   T++D+S      E ++ +      K    K+ AE  +  KS+FLA++SHE+R
Sbjct: 496 ESKRRLKATINDLSTSRQILERQKTELSIANAKYQVEKERAETANKTKSEFLAKMSHELR 555

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TPL AI+GFSEVIK + FG LG+ +Y EYA  I  SG  +L+++N++L++SKIE+ K+++
Sbjct: 556 TPLNAILGFSEVIKKEIFGELGSVKYYEYAQDIHYSGQHLLNMINNILEMSKIETEKISI 615

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
             +   L   ++E I L+   A  K I I     + +    AD R +K+I   ILSN+I 
Sbjct: 616 DKQNADLIPIINEGIRLIGSSAQSKNIKIEKKIPSEL-FFNADKRIIKKILFPILSNSIK 674

Query: 718 FTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
           FT + G+++I T+    + VI+ + DTG+G+    LEK  +PF  + N       G GLG
Sbjct: 675 FTNNNGKMMIRTSKI-GQCVIITIADTGIGIPKSALEKIGQPFEPLHNQYDQSIGGFGLG 733

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           L ++ A+ + + G+  I S   KGT++ I  P
Sbjct: 734 LAISDALTNLHGGRLKIISQEGKGTIVTICMP 765


>gi|152993425|ref|YP_001359146.1| hypothetical protein SUN_1842 [Sulfurovum sp. NBC37-1]
 gi|151425286|dbj|BAF72789.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 1046

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 83/293 (28%), Positives = 133/293 (45%), Gaps = 24/293 (8%)

Query: 538 LLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK---------------KIAEKES 582
           L+ L +          +  T+ DI     ++ +    K                  ++ +
Sbjct: 318 LVMLIVNYNINRDKQLFDDTLRDIEAVLNKEQQKELQKLIDRHDINNIYRFLVNTIQEAN 377

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
             K  FLA +SHEIRTPL  I+GF++++K+        P   E+   I+ S + +L IVN
Sbjct: 378 EAKDLFLANMSHEIRTPLNGIVGFTQLLKSTN----PTPDQEEFITVIENSSDNLLAIVN 433

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADL 701
           D+LD+SKI++ K+ L   P +  E    AI      A EK I +       +P  ++ D 
Sbjct: 434 DILDLSKIKADKIELESIPFNAIEKFESAIESYGARAAEKDIELGVFIDPGLPTPLIGDP 493

Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTH----TSNEEVILRVRDTGVGMTNYELEKAM 757
             + QI +N++SNAI FT + G I +          N  +   VRDTG+G+T  + +K  
Sbjct: 494 TKISQIIVNLISNAIKFTSTHGSIDVRIEKMNETEENVTMKFSVRDTGIGITEEQKDKIF 553

Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            PF Q   S   +  GTGLGL ++  +     G+  I S   +G++      L
Sbjct: 554 DPFSQADVSTSRKYGGTGLGLAISVKLTAFMGGELDIESEEGEGSVFFFSLTL 606


>gi|157962196|ref|YP_001502230.1| histidine kinase [Shewanella pealeana ATCC 700345]
 gi|157847196|gb|ABV87695.1| histidine kinase [Shewanella pealeana ATCC 700345]
          Length = 806

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 80/247 (32%), Positives = 133/247 (53%), Gaps = 8/247 (3%)

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + +  L  A++  ++ +S KS FLA +SHEIRTPL  IIG +E++ + +   +      +
Sbjct: 299 RMEKGLIFAREKEQQANSAKSSFLANMSHEIRTPLNGIIGMTEILTDSKLTAI----QKD 354

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           Y   I+ S   +L ++ND+LD+SKIESG +       ++ E + +  +L+   A +K I+
Sbjct: 355 YLATINSSSQTLLMLINDILDLSKIESGHLEFCPHTCNIKEVIYDTAALITPKAQQKNIV 414

Query: 686 IRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRV 741
           +R    + +P  I AD + ++QI +N+ SNAI FT SG    ++++      N  ++  V
Sbjct: 415 LRIIIGDEVPTYICADEQKLRQILMNLASNAIKFTRSGSVSFKLVVKAEEGENIRLLFSV 474

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
           +DTGVG+   +  K  + F Q  ++  I   GTGLGL +A  MV    G+  I S    G
Sbjct: 475 KDTGVGIDKNKHAKIFEEFQQEESNTSIDYGGTGLGLSIATKMVKIMGGEIMISSDKGVG 534

Query: 802 TLIEIIF 808
           +    I 
Sbjct: 535 SEFHFIL 541


>gi|32477063|ref|NP_870057.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
 gi|32447611|emb|CAD79210.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
          Length = 652

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 125/676 (18%), Positives = 228/676 (33%), Gaps = 75/676 (11%)

Query: 155 TNLYVPIDLAALPIYSRNREFSG----FRGFGIVHVNRVDNDPRALGKRL-DKKFSHLHE 209
           ++    I L A   + +N  F        G G    +R+   P  L  R     FS +  
Sbjct: 6   SSTKRTIRLVAAFRFRQNGAFPSDSSPSGGTGFDRSDRIGVLPWKLMLRFIQSLFSSMSL 65

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
            +K           +         L     VSS T+  A      +        +    L
Sbjct: 66  ERKCLLFFGSALVVLMCGAFCMVFLLADRWVSSTTQQQARDAAATEMMLIHAAATYTEHL 125

Query: 270 PE------QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS---AYFDEGEN 320
           PE      ++    +     ++   F  L  +  + FE L     P+         + E 
Sbjct: 126 PENKLEMTRQKIADLRSQLLSQDIEFDILGLDDPQPFENLPAPTAPTEPSELKLLQDLEP 185

Query: 321 LTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
                +++      +     +  A+ + +      +    +  G  +             
Sbjct: 186 QFRARLERLLSGDPIDLSKAVDLADDAAMSRIGPANRPVFKELGPTNGRYV--------Y 237

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
            +PV +      C   S  + ++  + + +     +P+        +             
Sbjct: 238 YEPVFMTYDCVPCHVPSGEIISLSKDEDPAKLAAQLPYRVKRVSMPDDKIVKDMTGI--- 294

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV--EDILRKPFT 498
                          +I+ + +  I                  LF        ++ +P  
Sbjct: 295 --------------RAIVVSIAMFIV--------------AVTLFVLHAIVRYLVLQPLL 326

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM 558
              + +               ++    E   L       L  L     +L   +      
Sbjct: 327 HLRDVSDAITHGDTNQRA---NISTDDEFRELADAFNRMLRHLTETQTQLQSVNR----- 378

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
               E     ++ +       + +  K+DFLA +SHE+RTPL +IIGFSEV++       
Sbjct: 379 ----ELDARVDQFAQLNLQLYEANRLKTDFLANMSHELRTPLNSIIGFSEVLQ---GIDS 431

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
            + +   YA+ I +SG L+L+++ND+LD++K+E+GKM +      L   V     ++Q  
Sbjct: 432 LSEKQRRYASNIQKSGRLLLEMINDILDLAKVEAGKMEVRRSEFQLSRLVGAQCDMIQSL 491

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738
           + +K I +      ++P    D   + QI  N+LSNAI FTP GG I +      ++   
Sbjct: 492 SEDKNISLSVEVPEDLPVAYQDPNKLGQILNNLLSNAIKFTPEGGMITVRVVDLHDDRFR 551

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPN-----SQQIRGEGTGLGLPLAKAMVDANMGKFY 793
           L V DTGVG+ + +     + F Q               GTGLGL + K +     G+  
Sbjct: 552 LSVTDTGVGVADEDQPIIFQKFRQSKKVLDGDGLTREFAGTGLGLSIVKELAVLLGGEID 611

Query: 794 IFSTPAKGTLIEIIFP 809
             S   +G+   +I P
Sbjct: 612 FQSELGRGSTFWVILP 627


>gi|262190504|ref|ZP_06048750.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae CT 5369-93]
 gi|262033616|gb|EEY52108.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae CT 5369-93]
          Length = 1176

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 88/382 (23%), Positives = 158/382 (41%), Gaps = 24/382 (6%)

Query: 441 RINKRKMEIEVMQLC---SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP- 496
           R +++  ++   QL     +L+     I I + +  ++ TN A  K++    E    +P 
Sbjct: 511 RSSEQVAKLSTEQLRWLTELLDTIPSMIFISDEKDEVVLTNAAYRKIYHTCCEKGCVQPQ 570

Query: 497 --FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554
              +     +        + +    +         +             I   +     Y
Sbjct: 571 PECSFLALPDQHEAEFSIIIQAPKSNCSIGEHYFHVTRRA---------ISHPINQRKYY 621

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
               +DI+E K+ +  L  + + A +    ++ FLA VSHE+RTP+ A++G  E++ ++ 
Sbjct: 622 LTLFNDITELKETEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGLMEILASR- 680

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
              L +            S   +   VND+LD SKIE+ ++ L     +L + +   +  
Sbjct: 681 ---LKSSESQLLLTNAISSAERLKLHVNDILDFSKIEAQQLQLDIGLYNLADELGPLLRG 737

Query: 675 VQLYANEKRILIRTSFANN-IPRILADLRSVKQIALNILSNAIHFTPSGGQI-IISTTHT 732
            +  A  K I     ++ N +     D     QI  N+LSNAI FT  G  +  I     
Sbjct: 738 FEASAQLKEIEFDVIWSPNSLLLANFDALRFNQIVTNLLSNAIKFTDQGRVVFKIDVAPE 797

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
               + + V DTG GMT  ++E    PF Q  ++   R  GTGLG+ +   +++   GK 
Sbjct: 798 ---MLTIVVEDTGCGMTQTQIESLFVPFAQADSTITRRFGGTGLGMSIVANLIELMNGKI 854

Query: 793 YIFSTPAKGTLIEIIFPLYDTS 814
            + S   +GT I++  PL   +
Sbjct: 855 EVKSEFEQGTQIQVNLPLVTQT 876


>gi|260773414|ref|ZP_05882330.1| phosphate regulon sensor protein phoR [Vibrio metschnikovii CIP
           69.14]
 gi|260612553|gb|EEX37756.1| phosphate regulon sensor protein phoR [Vibrio metschnikovii CIP
           69.14]
          Length = 434

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 80/413 (19%), Positives = 156/413 (37%), Gaps = 36/413 (8%)

Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
             R     W+ +            +         NGI       R  ++++   + +  +
Sbjct: 50  QVRFSAWLWDEKR-------LTPPSGSGNWESLFNGIYRLQQRQRKKRKELTNLIRRFRN 102

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
             E+  D + +   EG I+  NR    L G+   D   +P +  +               
Sbjct: 103 GAESLPDAVVVFRAEGNIVWCNRLAQYLLGFRWPDDAGQPISNLIRTPGFINYLQKNDFS 162

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKK 576
             L +   L              SL + I        + + + D+++ KQ +        
Sbjct: 163 EPLTMHSPLNVER----------SLELRIVPYTEGE-HLMVVRDVTQVKQLEG------- 204

Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
                   + +F A VSHE+RTP+T + G+ E+   +    L  P + +    +    N 
Sbjct: 205 -------MRRNFFANVSHELRTPMTVLQGYLEM--TEDPDLLLGPMWPKAHGVMTEQLNR 255

Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696
           +  +VN LL +SKIE+  ++   E V +   +          + E+   IR +    + +
Sbjct: 256 MSSLVNQLLTLSKIEASPIHELDEEVDVPAMLEVLEKEALSLSGEQAHQIRFTVDKQL-K 314

Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKA 756
           +LAD   ++    N++ NA+ +TP+G +I +   +T    +   V D G G+    L + 
Sbjct: 315 VLADEDQLRSAISNLVYNAVKYTPAGAEIQVRWQNTEQGAL-FEVEDRGEGIAAQHLHRL 373

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            + F ++  ++     G+GLGL + K  +  +     I S    G+    + P
Sbjct: 374 TERFYRVDKARSRDTGGSGLGLAIVKHALSHHDSHLDIRSEVGVGSCFSFVLP 426


>gi|330816277|ref|YP_004359982.1| Phosphate regulon sensor protein PhoR [Burkholderia gladioli BSR3]
 gi|327368670|gb|AEA60026.1| Phosphate regulon sensor protein PhoR [Burkholderia gladioli BSR3]
          Length = 437

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 79/411 (19%), Positives = 161/411 (39%), Gaps = 35/411 (8%)

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT-----RINKRKMEIEVMQLCSILEATS 462
                   +      + P      G     +           R++E +  +    ++A+ 
Sbjct: 49  HTQQLWRLLDAPVYGEVPSAPGIWGEIYYRLHKLAKQWHAQVRQVEQQHSRFIQAIQASP 108

Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522
           +G+A+++    I   N      FG   +  LR+  T  +         +          +
Sbjct: 109 NGVAMLDDHDQIEWCNAIAELHFGLDAKRDLRQHITHLVRHPDFVRYLNA---------Q 159

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES 582
              E + +    E +   + + +     +    LT  DI+E ++                
Sbjct: 160 HYDEMLVMRGMGEGRQHVIAVQVFPYGDNRKLLLT-QDITEVERT--------------D 204

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
           + + DF+A VSHE++TPLT + GF E ++     PL +     Y + +++    +  IV 
Sbjct: 205 AMRRDFVANVSHELKTPLTVLSGFLETLRE---LPLSDEERARYLDMMEQQAGRMRKIVT 261

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702
           DLL ++K+E        +PV +D+ +     + Q  +      I     + +  +     
Sbjct: 262 DLLVLAKLEGEGKPPTDKPVDMDDVLGHLEDVAQTLSAGHH-EISFEIDDTL-SVTGAET 319

Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
            +     N+++NA+ +TP GG+I +        + +  V+D+G G+   +L +  + F +
Sbjct: 320 EIFSALGNLVTNAVRYTPEGGKIRV-CWRRDGSQAVFSVKDSGFGIPAEDLPRLTERFYR 378

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
           +  S+     GTGLGL + K ++  + G+  I S   +G+     FP   T
Sbjct: 379 VDRSRSRDTGGTGLGLAIVKHVLQRHDGQLLIQSEEGRGSTFTARFPAQRT 429


>gi|256060709|ref|ZP_05450873.1| integral membrane sensor signal transduction histidine kinase
           [Brucella neotomae 5K33]
          Length = 609

 Score =  284 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 92/349 (26%), Positives = 168/349 (48%), Gaps = 4/349 (1%)

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
             ++ EGI+ S +   +KL G   + +        +           L ++ +    + +
Sbjct: 211 FGLDIEGIVSSVDGETAKLLGVQPKMLEGTALIDRVHVADRVQYLSLLADLRAGMATRKV 270

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
           +            +      +        +L    +   ++  ++++  K   E E   K
Sbjct: 271 DVRLRSIE-NGNPVFRAYRFEGAGSDRAITLIGRSLEGEQKLLDEIAMLKAELESERIGK 329

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
              LA VSHE+RTPL +IIGFS+++ ++  G L + R  EYA  I +SG+ +L++VN +L
Sbjct: 330 GRLLATVSHELRTPLNSIIGFSDMLTHEIGGKLASDRQREYAGLIHQSGHYLLELVNAVL 389

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
           D S++E+G  ++  +     +AV    +++   A +K +       N +  ++AD R+V+
Sbjct: 390 DNSRLETGTYSIAPQSFVFRDAVEMCTAVMLPQAEKKGVAFCHRVGNGVGELVADRRAVQ 449

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNE---EVILRVRDTGVGMTNYELEKAMKPFGQ 762
           QI LN+ +NA+ FT SGG + I       +    +   V DTG+G+   +L++   PF +
Sbjct: 450 QILLNLATNAVKFTQSGGCVTIDAARVMADGCPMLEFSVSDTGIGIEPEDLQRIGTPFVR 509

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
             NS     EG+GLGL + K +V+ + G   + S P +GT++ I  PL 
Sbjct: 510 AGNSYTQAQEGSGLGLSVVKGLVELHQGSMQLKSRPGEGTVVMIRLPLA 558


>gi|88606773|ref|YP_505514.1| sensor histidine kinase [Anaplasma phagocytophilum HZ]
 gi|88597836|gb|ABD43306.1| Sensor histidine kinase PleC [Anaplasma phagocytophilum HZ]
          Length = 470

 Score =  284 bits (727), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 93/252 (36%), Positives = 147/252 (58%), Gaps = 1/252 (0%)

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
              +L   K+ AEKES  KS FLA VSHE+RTPL +IIGFSE+++ +  GPLGN +Y EY
Sbjct: 217 ANLELQEKKENAEKESVSKSQFLANVSHELRTPLNSIIGFSEIVQRESLGPLGNAQYKEY 276

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
              I+ +G  +L ++ND+LD SK E+ K+++      L + V    +++   A E ++ +
Sbjct: 277 IKEINHAGVHLLSLINDILDFSKAEANKLSVELVKCDLRKIVDSCFNMMLPKAQEAKVEL 336

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
           +     +   ++ D R +KQ+ LNIL+N++ FTP  G + +S       EV++ + D G+
Sbjct: 337 KRDMPESQIVLMVDARRMKQVILNILTNSMKFTPEKGFVRLSVEKKQE-EVVIEICDNGI 395

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+   +L K M  FGQ  ++   + EGTGLGLPL+K +V+   G F I      GT++ +
Sbjct: 396 GIAQQDLYKVMSVFGQADSTHSRKYEGTGLGLPLSKKLVELMNGTFSIKGEANLGTVVTL 455

Query: 807 IFPLYDTSHPHD 818
            FP  + S   +
Sbjct: 456 SFPCVEESPESE 467


>gi|115358543|ref|YP_775681.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria AMMD]
 gi|115283831|gb|ABI89347.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ambifaria
           AMMD]
          Length = 664

 Score =  284 bits (727), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 92/414 (22%), Positives = 159/414 (38%), Gaps = 21/414 (5%)

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ--LCSILEATSDGIAI 467
            L M   P    ++                       +   V    L  +++A+ D I  
Sbjct: 100 VLVMAVKPLLANDRLRGAEDAEEDGARSPRREPEPGTLARSVDDTVLRRVVDASPDAIVG 159

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
           ++    I S N A  +LFG      +    T+ +      +     +   +      L+ 
Sbjct: 160 VDVARRITSWNLAARRLFGIDAAAAIGHDVTMLIAPRWLRLHPVPASFADAGAPAGPLD- 218

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD-----------ISEWKQEKNKLSHAKK 576
             L   ++            +  +      +                  +       A+ 
Sbjct: 219 -ILCLRRDGSRFRATFTASPIVDAQGNCTGLSMTLREARERRRCEQRDLRMLRGARDARV 277

Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
            A++ +  K + LA VSHE+RTPL  I G+ EV+++       +    +  + IDRS   
Sbjct: 278 QADESNRMKDELLATVSHELRTPLNVIYGWVEVLRSGEGQGFAH----QAIDAIDRSARS 333

Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696
           +  +V DLLD S + +G++ L   PV L   V EA+  +   A    + + T  A     
Sbjct: 334 LSRMVGDLLDASSLATGRVRLERTPVDLVRIVQEAVREIGDTAQANGLELSTECAMPSCV 393

Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKA 756
           I AD   ++Q+  N+LSNAI FTP GG+I +S    +   V L V DTG G++   L   
Sbjct: 394 IAADAERLRQLLSNLLSNAIKFTPPGGRIKVSLNP-AGARVRLSVADTGQGISAERLPHL 452

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFP 809
              F +   +  +   G GLGL + + +   + G+    S    +GT + ++ P
Sbjct: 453 FDTFSRPEGAPALPKRGLGLGLSIVRNIARLHGGEVAAASEGAGRGTTVTVMLP 506



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 47/533 (8%), Positives = 111/533 (20%), Gaps = 42/533 (7%)

Query: 41  KENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISE 100
            E     S  +         SV +T                       +D    +   + 
Sbjct: 120 AEEDGARSPRREPEPGTLARSVDDTV-------LRRVVDASPDAIV-GVDVARRITSWNL 171

Query: 101 ELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL-WPIEGTNLYV 159
              +  G  A   IG  +  +     +  +                  L    +G+    
Sbjct: 172 AARRLFGIDAAAAIGHDVTMLIAPRWLRLHPVPASFADAGAPAGPLDILCLRRDGSRFRA 231

Query: 160 PIDLAALPIYSRNREFSGFR------------GFGIVHVNRVDNDPRALGKRLDKKFSHL 207
               +  PI       +G                  + + R   D R      ++    L
Sbjct: 232 TFTAS--PIVDAQGNCTGLSMTLREARERRRCEQRDLRMLRGARDARVQADESNRMKDEL 289

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
                           I+           +       +        L      LL +   
Sbjct: 290 LATVSHELRT--PLNVIYGWVEVLRSGEGQGFAHQAIDAIDRSARSLSRMVGDLLDASSL 347

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
           +        T        ++    + + ++ +   LS            + E L     +
Sbjct: 348 ATGRVRLERTPVDLVRIVQEAVREIGDTAQANGLELSTECAMPSCVIAADAERLRQLLSN 407

Query: 328 KCPIPF-FVYSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
                  F    G +    NP+   +     +   +   G+S           +  +   
Sbjct: 408 LLSNAIKFTPPGGRIKVSLNPAGARV----RLSVADTGQGISAERLPHLFDTFSRPEGAP 463

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
                   +  S   +  + +     A +                 G +       +   
Sbjct: 464 ALPKRGLGLGLSIVRNIARLHGGEVAAASEGAGRGTTVTVMLPADLGADDTTTGHPVRPS 523

Query: 446 KMEIEVMQLCSILEATSDG--IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
                V           DG  + +++ +    ++  A  +  G  V         + +  
Sbjct: 524 GASTAVAL---------DGRRVLVVDDDATSRASLAAALETLGAEVSTAQSGHDALDVVA 574

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556
                +      +   D    L+ I        +L  + +            +
Sbjct: 575 QQHPSVVLSDLAMPDGDGFWLLDHIRDLPDGGGRLPVVAVTAHAGTADRSRVM 627


>gi|260436759|ref|ZP_05790729.1| drug sensory protein A [Synechococcus sp. WH 8109]
 gi|260414633|gb|EEX07929.1| drug sensory protein A [Synechococcus sp. WH 8109]
          Length = 688

 Score =  284 bits (727), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 72/396 (18%), Positives = 169/396 (42%), Gaps = 45/396 (11%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            ++    ++  S++   +DG  +++ +G I+  N    +LF +    +  +     L + 
Sbjct: 290 EELTAAQVKQQSLIATMADGAMLLDADGRIVLANPTARRLFRWEGRSLEGQELVGELPEL 349

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDI 561
               ++  L  +L         + ++G     + L + +   +          ++T+ D+
Sbjct: 350 LAIELHSPLDSLLGSAADSEDLRCSVGEPA--RTLRIVLQAVRDASGETLKGIAVTIQDL 407

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           +                 + ++ +S F++ VSHE+RTPL  I  + E + +     L   
Sbjct: 408 TR--------------EVELNAAQSRFISNVSHELRTPLFNIKSYVETLHD-LGDQLSPD 452

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
              E+    +   + +  +VN++LD+S++ESG+  L  EP+S+  A+ + +   +L A +
Sbjct: 453 EQKEFLGVANDETDRLTRLVNNVLDLSRLESGR-TLQLEPISMRPAMEQTLRTYRLNAED 511

Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE------ 735
           +++ +       +P +L +   + Q+  N++ NA+ F+  GG + +      +       
Sbjct: 512 RQVELVLDVNEELPEVLGNWDLLLQVLDNLVGNALKFSRPGGPLALRAYPWPDACSVEGT 571

Query: 736 -----------------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
                            ++ + + DTG G+++ + E+    F ++ N+      GTGLGL
Sbjct: 572 AITSSDGPTCALTSPLPKLRVEIADTGCGISSADQERIFDRFFRVENAVHTEV-GTGLGL 630

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
            + + +++ +  +  + S P  GT      PL +  
Sbjct: 631 SIVRGILEKHGAQVQMASEPEVGTTFWFDLPLAEAD 666


>gi|254228337|ref|ZP_04921764.1| response regulator receiver domain protein [Vibrio sp. Ex25]
 gi|151939143|gb|EDN57974.1| response regulator receiver domain protein [Vibrio sp. Ex25]
          Length = 1059

 Score =  284 bits (727), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 85/264 (32%), Positives = 135/264 (51%), Gaps = 12/264 (4%)

Query: 559 HDISEWK--QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            + S  K  Q K     AK  A + S  KS FLA +SHEIRTPL  +IG SEV+ +    
Sbjct: 375 REQSRQKLTQAKEDAEKAKDDAIEASKAKSSFLANMSHEIRTPLNGVIGISEVLSDTPLT 434

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
                   +Y + I+ S  L+L ++ND+LD SKIESG + +      + E++ +  S++ 
Sbjct: 435 AT----QRDYVDTIETSSQLLLSLINDVLDFSKIESGMLLISPHSTCVRESIYDIASIIS 490

Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSN 734
             A EK I ++ S + N P  ++ D   ++QI +N +SNA+ FT  G  ++ + T    N
Sbjct: 491 PKAKEKGIDVQVSISRNTPYHVMLDDHRIRQIIMNFMSNAVKFTEQGCVELSVITREIKN 550

Query: 735 EE--VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
            E  +   V+D+G+G+   + +K   PF Q  NS   +  GTGLGL ++  +V+   G+ 
Sbjct: 551 GEASIEFSVKDSGIGIDEQQQKKIFAPFAQEDNSTTRQFGGTGLGLAISTQLVELMGGEI 610

Query: 793 YIFSTPAKGTLIEIIF--PLYDTS 814
            + S   KG+        P+    
Sbjct: 611 QLESEKGKGSRFFFELTAPIVTQE 634


>gi|38505595|ref|NP_942216.1| two-component hybrid sensor and regulator [Synechocystis sp. PCC
           6803]
 gi|38423619|dbj|BAD01830.1| two-component hybrid sensor and regulator [Synechocystis sp. PCC
           6803]
          Length = 1209

 Score =  284 bits (727), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 109/609 (17%), Positives = 209/609 (34%), Gaps = 74/609 (12%)

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
            +   L+  + S    QE           K+    T   +   +      R         
Sbjct: 119 AQGAVLVIRDISDRHLQEQTLQQLNENLEKRVLERTQAVSLINNKLEQELRERKKTEIAL 178

Query: 316 DEGENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYK-SVDDIEI------AGGLS 367
               +     +        V   +G +   N  F  L       + +        A    
Sbjct: 179 KATTSRLEALIQNLQAGVLVENENGKIVLVNQVFCDLFGIDVPPEKLIGFDCRQSAQFAK 238

Query: 368 TLLDAPK---------LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
            L + P+         L +   +    L   D    A       +  + +  L +     
Sbjct: 239 ILFEDPEAFIIGIDNILQNRQIVTNEELRLKDGRTFARDYVPIEVGNHHDGRLWLYRNIT 298

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKM-------EIEVMQLCSILE------------ 459
            +         Q        +     R+        ++ V +L   L+            
Sbjct: 299 PQKQAEVSLRKQYQRTLLLKEITEEIRQSLDPVKIFQVAVSRLGQTLQVSRCIVHLYSDM 358

Query: 460 -----------ATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
                            ++++   +I   N  + +      + +      +         
Sbjct: 359 PQPHLTCVAEYLIPGMTSMLDLNLLIAD-NPHLLRALNQD-DAVQVDNLKMVPTAVPLQD 416

Query: 509 MNHYLTEILSLDLRQTLEKITLG--------STKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
             + L     L +R + +  T G         ++      + ++                
Sbjct: 417 FYNQLQVYSLLIIRTSYQDKTNGLLILHQCDRSRSWNTEEVELVKAVADQVGIALAQAKL 476

Query: 561 ISEWKQEKNKLSHAKKIAEKE-------SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
           + + ++ + +L    K            +  KSDFLA +SHEIRTP+ A+IG + ++ + 
Sbjct: 477 LEQEREIRQQLIEQNKALMTATKAAEDANRAKSDFLATMSHEIRTPMNAVIGMTGLLLDT 536

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
                 N +  ++   I  SG  +L ++ND+LD SKIESG+  L   P  + + V E + 
Sbjct: 537 HL----NTQQQQFTETIRSSGEALLSLINDILDFSKIESGQFKLEIHPFEIQQCVEECLD 592

Query: 674 LVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTH 731
           LV   A  K++ +       +P  IL DL  V+Q+ +NIL+NA+ FT SG  Q+ +S T 
Sbjct: 593 LVAPQAFAKKLDLVYQIEPQVPMAILGDLTRVRQVLVNILANAVKFTTSGSIQVRVSATV 652

Query: 732 TSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
            + ++    +   ++DTG+G++  +     K F Q+  S   +  GTGLGL + K + + 
Sbjct: 653 ANQQQNKYTIQFSIKDTGIGISPDQQSALFKSFSQVNTSIARKYGGTGLGLAICKRLTEM 712

Query: 788 NMGKFYIFS 796
             G+ ++ S
Sbjct: 713 MGGQIWVES 721



 Score = 74.7 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 36/307 (11%), Positives = 86/307 (28%), Gaps = 50/307 (16%)

Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
            +    G + + N +F  L     +  +         L         +  P  +  + + 
Sbjct: 33  VWTDGTGQIQWCNTAFDHLMGKLHILILGKNLVELLPLHRNSQPLEVSHHPFTIIVATQQ 92

Query: 393 CI-----------AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN---------- 431
                             + T          +        +   + + Q           
Sbjct: 93  KFTDHYEFNQNGKWLHLEIMTSPLMNAQGAVLVIRDISDRHLQEQTLQQLNENLEKRVLE 152

Query: 432 ----------GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
                      +E E  + +  +  ++    +L ++++    G+ + N  G I+  N+  
Sbjct: 153 RTQAVSLINNKLEQELRERKKTEIALKATTSRLEALIQNLQAGVLVENENGKIVLVNQVF 212

Query: 482 SKLFGY--PVEDILRKPFTV-----FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
             LFG   P E ++            +    P      +  IL      T E+      K
Sbjct: 213 CDLFGIDVPPEKLIGFDCRQSAQFAKILFEDPEAFIIGIDNILQNRQIVTNEE---LRLK 269

Query: 535 EEKLLSLRIIIKKLP-FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
           + +  +   +  ++            +I+  KQ +  L        ++   ++  L  ++
Sbjct: 270 DGRTFARDYVPIEVGNHHDGRLWLYRNITPQKQAEVSL--------RKQYQRTLLLKEIT 321

Query: 594 HEIRTPL 600
            EIR  L
Sbjct: 322 EEIRQSL 328



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 72/224 (32%), Gaps = 29/224 (12%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            +++  + ++   L    + I   +  G I   N A   L G     IL K     L  +
Sbjct: 12  EELQSTLAKMDIALGTVDEAIVWTDGTGQIQWCNTAFDHLMGKLHILILGKNLVELLPLH 71

Query: 505 TPSVMNHYLTE----ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
             S            I++   + T         +  K L L I+   L  +    L + D
Sbjct: 72  RNSQPLEVSHHPFTIIVATQQKFTDHYEF---NQNGKWLHLEIMTSPLMNAQGAVLVIRD 128

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           IS+   ++  L    +  EK    ++  ++                   + N +      
Sbjct: 129 ISDRHLQEQTLQQLNENLEKRVLERTQAVS-------------------LINNKLEQELR 169

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLD--ISKIESGKMNLHFEPV 662
            R       +  + + +  ++ +L    + + E+GK+ L  +  
Sbjct: 170 ERKKTEIA-LKATTSRLEALIQNLQAGVLVENENGKIVLVNQVF 212


>gi|189348658|ref|YP_001941854.1| putative signal transduction histidine kinase [Burkholderia
           multivorans ATCC 17616]
 gi|189338796|dbj|BAG47864.1| putative signal transduction histidine kinase [Burkholderia
           multivorans ATCC 17616]
          Length = 528

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 78/376 (20%), Positives = 148/376 (39%), Gaps = 20/376 (5%)

Query: 448 EIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
                +  +++ + +D  + +++ EG +++ N    ++ GY   +I+   F+ F      
Sbjct: 26  RFAEFRFQTVVASITDYAVFMLDTEGHVVTWNAGAERIKGYRASEIVGNHFSRFYPPEAL 85

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDIS 562
           +        +         E       K+  L    + I  +   S     +     D++
Sbjct: 86  AAGRPSY-GLREAATHGRFEDEGWRVRKDGSLFWANVTITAVRDESGQLCGFIKITRDMT 144

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E ++ +          E  +   S F+A ++HE+R  L  +     V+++         +
Sbjct: 145 ERRRLEE--------LETSTHRLSVFIAMLAHELRNHLAPLRHSVGVLQSLPDPAPALAQ 196

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             +    + R    +  +V+DLLD+ +I SGK+ L   PV++ + V+  +  VQ     +
Sbjct: 197 CRDA---VHRQVAQLTRLVDDLLDVGRITSGKVELEDRPVTVRDLVARGVESVQPKLATR 253

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
              I          +  D   + Q+  N+L NA  F+P GG+I IS        V +RV 
Sbjct: 254 EQQIHVDLPPEPIVLRGDDARLVQVLHNLLDNASKFSPRGGRIDISARVE-GPVVAIRVI 312

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKG 801
           D GVG+    LE     F Q   +     +G GLGL + ++ V+ + G     S  P  G
Sbjct: 313 DRGVGIAPGALESIFDLFEQ-EGAAHRPTDGFGLGLAICRSFVELHGGMISAESDGPGHG 371

Query: 802 TLIEIIFPLYDTSHPH 817
               I  P+   +   
Sbjct: 372 ATFIIRLPVERAARAE 387



 Score = 60.0 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/304 (9%), Positives = 76/304 (25%), Gaps = 24/304 (7%)

Query: 58  NQESVSNTNYLDSENTFVFDPIPRTVR--FTWNIDAHGYLKEISEELPKTIGNYAFKMIG 115
              +    + L     F F  +  ++     + +D  G++   +    +  G  A +++G
Sbjct: 14  PSPAPDGGDLLHRFAEFRFQTVVASITDYAVFMLDTEGHVVTWNAGAERIKGYRASEIVG 73

Query: 116 MRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREF 175
                      +        L +       +   W +         ++    +   + + 
Sbjct: 74  NHFSRFYPPEALAAGRPSYGLREAATHGRFEDEGWRVRKDGSLFWANVTITAVRDESGQL 133

Query: 176 SGFRGFGIVHVNRVDNDPRALG----KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231
            GF    I            L     +         HE++   + +      + S   P 
Sbjct: 134 CGF--IKITRDMTERRRLEELETSTHRLSVFIAMLAHELRNHLAPLRHSVGVLQSLPDPA 191

Query: 232 PH------------LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTIN 279
           P              ++   V  L +        ++ E  P+   +  +   +     + 
Sbjct: 192 PALAQCRDAVHRQVAQLTRLVDDLLDVGRITSGKVELEDRPVTVRDLVARGVESVQPKLA 251

Query: 280 LNQYTKKQYFGT----LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV 335
             +             L+ +     + L +    +       G       V+   +   V
Sbjct: 252 TREQQIHVDLPPEPIVLRGDDARLVQVLHNLLDNASKFSPRGGRIDISARVEGPVVAIRV 311

Query: 336 YSHG 339
              G
Sbjct: 312 IDRG 315


>gi|23428538|gb|AAL11449.1| putative global response regulation sensor kinase GrrS [Serratia
           plymuthica]
          Length = 908

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 90/335 (26%), Positives = 148/335 (44%), Gaps = 17/335 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           LF Y +   +  P    +               L   +   +             +++ +
Sbjct: 192 LFAYRLMRDVTGPIRNMVNTVDR-----IRRGQLDSRVEGFMLGELHMLKNGINSMAMSL 246

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 247 TAYLEEMQQNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLASMSHELRTP 306

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+  +              +Y   I+RS N +L I+ND+LD SK+E+GK+ L  
Sbjct: 307 LNGVIGFTRQMLKTEMSVT----QTDYLQTIERSANNLLTIINDVLDFSKLEAGKLVLEH 362

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P SL E + E I L+   A+EK + +     N++P  ++ D   ++QI  N+L NAI F
Sbjct: 363 IPFSLRETLDEVIVLLAPSAHEKGLELTLDVHNDVPEQVIGDSLRLQQIITNLLGNAIKF 422

Query: 719 TPSGGQ-IIISTTHTSNEEVILRVR--DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T +G   I +      + +V L V+  DTG+G++  +  +  + F Q   S   R  GTG
Sbjct: 423 TETGNIDIRVELRGQQDHQVELEVQIHDTGIGISERQQSQLFQAFRQADASISRRHGGTG 482

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           LGL + + +V    G     S   +G+       L
Sbjct: 483 LGLVITQKLVKEMGGDICFHSQLNRGSTFWFHITL 517


>gi|88797996|ref|ZP_01113583.1| two component sensor kinase [Reinekea sp. MED297]
 gi|88779193|gb|EAR10381.1| two component sensor kinase [Reinekea sp. MED297]
          Length = 1120

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 78/253 (30%), Positives = 136/253 (53%), Gaps = 6/253 (2%)

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            + +I   +     L  AK++AE  ++ KS +L+ +SHE+RTPL +I+G+++++ +Q   
Sbjct: 646 LLQEIEAHQVTDAALQTAKELAENANAAKSRYLSGISHELRTPLQSILGYTQLLNDQ--- 702

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
           P   P      N I RSG  + D++  LLD+SKIE+GK++LH   V+  E V +   + +
Sbjct: 703 PDTTPSSRTRLNAIHRSGQYLADLIEGLLDVSKIEAGKLDLHLTSVAFPELVQQIADMFR 762

Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
           + A  K I  RT     +P  +  D + ++QI +N+LSNA+ +T  G  + ++  + S  
Sbjct: 763 MQAKAKGIEFRTDIQGTLPAWVKTDEKRLRQILINLLSNAVKYTDDG-YVRLTLRYRSQ- 820

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
                V DTG G+   + ++   PF ++ N    R  GTGLGL + K +V+   G   + 
Sbjct: 821 VAEFTVEDTGHGIAEDQHQRVFSPFERVENEASSRIPGTGLGLTIVKLLVEIMGGDIQLS 880

Query: 796 STPAKGTLIEIIF 808
           S+  +G+   +  
Sbjct: 881 SSIGQGSRFTVSL 893


>gi|330448533|ref|ZP_08312181.1| his Kinase A domain protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328492724|dbj|GAA06678.1| his Kinase A domain protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 1305

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 84/338 (24%), Positives = 156/338 (46%), Gaps = 14/338 (4%)

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
             N   S+L+ +P        F    +++    ++  + + +      T        T  
Sbjct: 571 FINLNASQLYRHPHIL-----FEQMKKRDDIDSLHDAMQQAVHAGYWST-NLQIQTQTYH 624

Query: 536 EKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
            + + LR  I ++     ++  + DI++ K+++  L  A   +   +  KS FLA +SHE
Sbjct: 625 PRWIELRCQISEVENGWQWNTIIIDITQAKEQQVALMEANAKSLAATESKSRFLAMMSHE 684

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           IRTP++ I+   E+++         P   +  + + +SG  +L+IVND+LD SKIE+GK+
Sbjct: 685 IRTPISGILSLLELME----PHAQKPELRQIHHNLSQSGLNLLNIVNDVLDFSKIEAGKL 740

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSN 714
           N++     L + +   +    ++AN+K +         +   +  D   + Q+  N+L+N
Sbjct: 741 NINPSRHVLSDLIHALVQPHSIHANQKEVSFTLWLDPAVAHYLSFDDFRLTQVLNNLLNN 800

Query: 715 AIHFTPSGGQ---IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           AI FT  G     + +     + + +   + DTG+G+   +L +  +PF Q+  S   R 
Sbjct: 801 AIKFTTMGNIHLAVDVVKETNTEQTLAFTIHDTGIGIKPEDLSQLFQPFVQVEQSSNRRF 860

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            GTGLGL +   +V    G  +  S   KGT   +I P
Sbjct: 861 SGTGLGLSICYQLVQLMDGDIHATSEVGKGTSFTVIVP 898


>gi|27366593|ref|NP_762120.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           vulnificus CMCP6]
 gi|27358159|gb|AAO07110.1| Sensory box sensor histidine kinase/response regulator VieS [Vibrio
           vulnificus CMCP6]
          Length = 1199

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 92/379 (24%), Positives = 165/379 (43%), Gaps = 18/379 (4%)

Query: 436 EDVDTRINKRKM-EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED-IL 493
           + +       ++ + ++  L  +L+     I+I + +G ++ +N+A    F    E+  +
Sbjct: 523 DSLRQSEKVVELSQHQISWLTKLLDTIPSMISISDSKGRLVLSNQAYQASFRQCRENGCV 582

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553
                      +      +   I        L +     T++        I+      + 
Sbjct: 583 DLESACSFLHLSEREQAEFEEIIQVPASECGLGERFYHVTRK-------AILHDQMEMTH 635

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
           Y     DIS+ KQ +  L  + + A +    ++ FLA VSHE+RTP+ A++G  E++ ++
Sbjct: 636 YLTLFSDISDLKQTELALRESNRAALQAVEARNQFLAVVSHELRTPIAAMLGLMEILSHR 695

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
               L N    +  +   RS   +   VND+LD SKIE+ ++ L  +   + E +   + 
Sbjct: 696 ----LSNSESQQLLDNAIRSAERLSLHVNDILDFSKIEASQLQLDIQEYRIIEELGPVLR 751

Query: 674 LVQLYANEKRILIRTSFANNIPRILA--DLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
             +  A  K +     +      I A  D   V QI  N+LSNA+ FT  G QI +    
Sbjct: 752 SFEASAQLKGLQFNVHWQPTA-YIDAQYDALRVNQIVSNLLSNAVKFTEVG-QIKVEIAC 809

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
             N  + + + DTG GMT  +L+   +PF Q   S   R  GTGLG+ + K+++D   G 
Sbjct: 810 DENA-LSIEIVDTGCGMTEAQLDCVFQPFVQADTSITRRFGGTGLGMSIVKSLLDLMGGT 868

Query: 792 FYIFSTPAKGTLIEIIFPL 810
              +S   +GT + +  P+
Sbjct: 869 IAFYSELEQGTKVSVWIPV 887


>gi|302381632|ref|YP_003817455.1| PAS/PAC sensor signal transduction histidine kinase [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302192260|gb|ADK99831.1| PAS/PAC sensor signal transduction histidine kinase [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 787

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 112/739 (15%), Positives = 238/739 (32%), Gaps = 56/739 (7%)

Query: 94  YLKEISEELPKTIGNYA---FKMIGMRLCD-------VSDILHIDPNNHIGDLLKRQNTW 143
            L  + + +P  +G+ A      IG+   D       +++ L+      +  LL     +
Sbjct: 75  RLSLVRDAMPVVVGDAAHIQAARIGLASDDSSDAAVGLAEALNARHPEAVRLLLDEGQAF 134

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +   W ++G                  R F G    G+ H+   +      G+     
Sbjct: 135 DLRDGDWRVQG------------------RPFGGEAWIGLSHLVPAERSDVVPGEAPGGL 176

Query: 204 -FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
               + +     + V   +  +               +    E  A  D         + 
Sbjct: 177 GAGLIADASPSPTWVVDGQGQLVWANHAWLTEVRAPSLEEAREAGAVFDRGADQLAAEVS 236

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE-YLSHRNHPSLSAYFDEGENL 321
                   E   +   +  +   K     L           +                  
Sbjct: 237 RMGVR--QEGFRWTAGDGRRRAWKIMAEPLAGVGGPVLVFAIDMTEAEETRDTLRRHVTA 294

Query: 322 TPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
             ET++       ++     L + N +F  L        +        LLD  +      
Sbjct: 295 HDETLNHLADAVAIFGPSRKLAFHNTAFQTLFNL-DPAWLNERPTHGELLDRLRQRRMLP 353

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
                     +      A         ++             Q         I  +    
Sbjct: 354 EVIDYAGWKAQELEFYEATEAA---PDDSWSLPDGRTLRVVRQPHPLGGILLIFSDITGE 410

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
              + +   ++    + L+  +D +A+   +G +   N A    +    E +        
Sbjct: 411 LSLRSRFNAQLQVQTATLDKLNDAVAVFGSDGRLRLHNEAFETFWAVSAERLEAAGDFDA 470

Query: 501 LEQ------NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554
           + +         ++       +   D    +     G T + ++ + +            
Sbjct: 471 VAELCKVALPDAALWLGLKARVADPDPESRVAVQGEGRTTDGRIAAWQTRPLP---DGAT 527

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
            +   D++  ++ +  L+  +   ++  + K +F+  VS+E+RTPLT I+G+SE++++  
Sbjct: 528 LVAFSDVTARRELEQALAQREAALKESQALKREFVGSVSYELRTPLTTIVGYSELLESLE 587

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
             P    R  ++A  I  +   +   ++D+LD+++I++G+M L    V + +  +EA+  
Sbjct: 588 GLP---ERSRQHAGAIRIAAGQLARSIDDVLDMAQIDAGEMELSVGDVRIRDLFAEAVER 644

Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
            +     +   ++     ++P + AD R + Q   ++L NA      GG + +       
Sbjct: 645 HRPRIEGRGATLKAMVPTDLPPVRADARRLMQAVDHLLENATRSVSEGGAVTLKAELN-G 703

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
            EV +RV DTG G+  +        F       +    G G+GL L KA+V+ + G   +
Sbjct: 704 TEVRIRVEDTGRGIPYHLQALVFDRFV------KRERGGPGVGLALVKALVELHGGWAEV 757

Query: 795 FSTPAKGTLIEIIFPLYDT 813
            S P KG    +  PL  T
Sbjct: 758 ESEPGKGAAFILHLPLEPT 776



 Score = 62.7 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/404 (10%), Positives = 93/404 (23%), Gaps = 35/404 (8%)

Query: 66  NYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEEL-PKTIGNYAFKMIGMRLCDVSDI 124
                               TW +D  G L   +     +       +       +   +
Sbjct: 170 GEAPGGLGAGLIADASPSP-TWVVDGQGQLVWANHAWLTEVRAPSLEEA-----REAGAV 223

Query: 125 LHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIV 184
                +    ++   +     +   W   G        + A P+         F     +
Sbjct: 224 FDRGADQLAAEV--SRMGVRQEGFRW-TAGDGRRRAWKIMAEPLAGVGGPVLVFA----I 276

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244
            +   +     L + +      L+ +    +     +   F   +      +     +  
Sbjct: 277 DMTEAEETRDTLRRHVTAHDETLNHLADAVAIFGPSRKLAFHNTAFQTLFNLDPAWLNER 336

Query: 245 EYYAHKDDVLK-TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303
             +    D L+     P +        ++ +F+                +        + 
Sbjct: 337 PTHGELLDRLRQRRMLPEVIDYAGWKAQELEFYEATEAAPDDSWSLPDGRTLRVVRQPHP 396

Query: 304 ---------SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTK 353
                          SL + F+    +   T+DK      V+ S G L   N +F     
Sbjct: 397 LGGILLIFSDITGELSLRSRFNAQLQVQTATLDKLNDAVAVFGSDGRLRLHNEAFETFWA 456

Query: 354 YKSVDDIEIAGGLSTL--LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411
             S + +E AG    +  L    L D      +    +D    +  A     +       
Sbjct: 457 V-SAERLEAAGDFDAVAELCKVALPDAALWLGLKARVADPDPESRVAVQGEGRTTDGRIA 515

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
           A    P                  +    R  ++ +      L 
Sbjct: 516 AWQTRPLPDGA-------TLVAFSDVTARRELEQALAQREAALK 552


>gi|149190709|ref|ZP_01868976.1| Signal transduction histidine kinase [Vibrio shilonii AK1]
 gi|148835475|gb|EDL52445.1| Signal transduction histidine kinase [Vibrio shilonii AK1]
          Length = 832

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 70/254 (27%), Positives = 125/254 (49%), Gaps = 8/254 (3%)

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           K+   +L      AE  +  KS+FL+ +SHEIRTP+  +IG + ++ + +     + + I
Sbjct: 282 KEYNQRLRDESDRAEAAAKAKSEFLSTMSHEIRTPMNGVIGMTNLLLDTKL----DEQQI 337

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
                   S   +L I+ND+LD SKIE+GK++L      L E V +  +++   A +K I
Sbjct: 338 RMTETTKNSAESLLSIINDILDFSKIEAGKIDLELIDFDLGEVVEDVGAMLYFAAEQKGI 397

Query: 685 LIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQ---IIISTTHTSNEEVILR 740
            +       +      D   ++Q+  N++SNAI FT  G     + +     ++  +   
Sbjct: 398 QLVCPATPVMDLCYRGDPGRIRQVLNNLVSNAIKFTEDGEVAVYVTVDEKRLTDSILRFE 457

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           +RDTG+G++  + +K    F Q  +S   +  GTGLGL ++K + +   G+  + S   K
Sbjct: 458 IRDTGIGISEEQQQKLFSRFSQADSSTTRKYGGTGLGLSISKRLTEIMGGEIGVTSETGK 517

Query: 801 GTLIEIIFPLYDTS 814
           G+       L ++S
Sbjct: 518 GSTFWFTVCLENSS 531


>gi|197119978|ref|YP_002140405.1| PAS domain-containing sensor histidine kinase response regulator
           [Geobacter bemidjiensis Bem]
 gi|197089338|gb|ACH40609.1| sensor histidine kinase response regulator, PAS, PAS and PAS
           domain-containing protein [Geobacter bemidjiensis Bem]
          Length = 845

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 92/661 (13%), Positives = 188/661 (28%), Gaps = 48/661 (7%)

Query: 181 FGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK-----GHSSVEKEKYDIFSQQSPPPHLR 235
           F I                +   +  +                +             + R
Sbjct: 66  FLISRYLDRLGAAERERLEILDNYRTIFNATNEAIFLHDIDSGRILDVNQQVLEMYGYTR 125

Query: 236 MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTI--NLNQYTKK--QYFGT 291
            +     +  + A      ++E    +       P+   +     N  Q+  +      T
Sbjct: 126 EEALAGDIGLFSAGSAPYSQSEAVAKVRKAADEGPQVFQWLAKRKNGEQFWAEVSLRRTT 185

Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLL 350
            +                       E         +  P               +  +  
Sbjct: 186 ARGKLAIIAVVRDVTERKRQEDALKEKNAHLRFFFEYAPASLAMFDRKMRYMQVSRRWQS 245

Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
           +             GLS     P++      K +         +   A            
Sbjct: 246 MYGLGD----RNLIGLSHYDVFPEI--TERWKELHRRGLAGEVLGEEAD--RFVRADGTV 297

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470
             + +                    +    ++ +  +      L  + +     +A  + 
Sbjct: 298 QWVRWEIRPWYEAVDRVGGIVIFTEDITQRKLTEEALSANERFLRMLTDQLPGMVAYWDN 357

Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530
           +      N+A  + FG   E ++       L +   +    Y+ + L+    Q  E+  +
Sbjct: 358 DLRCSFANKAYQEWFGKSPEQMIGITLPELLGEKLFAENEQYVRKALA-GEPQHFERTLV 416

Query: 531 GSTKEEKLLSLRIIIKKLPF-SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS--D 587
               E+       I  K+   +  + + + D++E K  + +    +   ++    +S   
Sbjct: 417 KPGGEKGYTWAHYIPDKIGGVTRGFYVLVSDVTELKLAEAEKVRLESQLQQAQKLESVGR 476

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
               V+H+    LT I+G ++ +      P    R       I ++      +   LL  
Sbjct: 477 LAGGVAHDFNNLLTVILGLAQ-LGMGELDPGDPVRGR--LEGIRQAAEKSAALTQQLLGF 533

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707
           ++    K  +    + L++ V + +S+++     + I +    A  + R+  D   + QI
Sbjct: 534 AR----KQTIAPVMLDLNQTVEQMLSMLK-RLVGENIEVVWRPARELWRVKMDPTQLDQI 588

Query: 708 ALNILSNAIHFTPSGGQIIIST--------------THTSNEEVILRVRDTGVGMTNYEL 753
             N+  NA       G+III T                   E V L V D G GM    +
Sbjct: 589 LANLCVNARDAIDDVGRIIIETGNARLDQEYCAARFGFVPGEYVQLTVSDDGCGMDKEMM 648

Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
               +PF          G+GTGLGL     +V  N G    +S P  GT  +I  P +D 
Sbjct: 649 AHIFEPFFTTKKL----GKGTGLGLATLYGIVKQNNGFINTYSEPCAGTTFKIYLPRHDA 704

Query: 814 S 814
           +
Sbjct: 705 A 705



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 23/157 (14%), Positives = 56/157 (35%), Gaps = 3/157 (1%)

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKL 484
             +    I          +R+    +    +I  AT++ I + + + G IL  N+ V ++
Sbjct: 61  AALLYFLISRYLDRLGAAERERLEILDNYRTIFNATNEAIFLHDIDSGRILDVNQQVLEM 120

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
           +GY  E+ L     +F   + P   +  + ++             L   K  +     + 
Sbjct: 121 YGYTREEALAGDIGLFSAGSAPYSQSEAVAKVRKAADEGPQVFQWLAKRKNGEQFWAEVS 180

Query: 545 IKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAE 579
           +++            + D++E K++++ L        
Sbjct: 181 LRRTTARGKLAIIAVVRDVTERKRQEDALKEKNAHLR 217



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/390 (8%), Positives = 89/390 (22%), Gaps = 29/390 (7%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMI---GMRLCDVSDILHIDPNNHIGDLLKRQN 141
           F  +ID+ G + ++++++ +  G    + +          S                 + 
Sbjct: 101 FLHDIDS-GRILDVNQQVLEMYGYTREEALAGDIGLFSAGSAPYSQSEAVAKVRKAADEG 159

Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
               +       G   +  + L       +           +V             K  +
Sbjct: 160 PQVFQWLAKRKNGEQFWAEVSLRRTTARGK------LAIIAVVRDVTERKRQEDALKEKN 213

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQ-QSPPPHLRMKNK-VSSLTEYYAHKDDVLKTEKY 259
                  E      ++   K       +       + ++ +  L+ Y    +   + ++ 
Sbjct: 214 AHLRFFFEYAPASLAMFDRKMRYMQVSRRWQSMYGLGDRNLIGLSHYDVFPEITERWKEL 273

Query: 260 PLLTSEESSLPEQ-EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
                    L E+ + F   +      +                +      +     +E 
Sbjct: 274 HRRGLAGEVLGEEADRFVRADGTVQWVRWEIRPWYEAVDRVGGIVIFTEDITQRKLTEEA 333

Query: 319 ----ENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
               E       D+ P     + +     +AN ++           I     L  LL   
Sbjct: 334 LSANERFLRMLTDQLPGMVAYWDNDLRCSFANKAYQEWFGKSPEQMIG--ITLPELLGEK 391

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
             ++N       L               T+                             +
Sbjct: 392 LFAENEQYVRKALA---GEPQHFE---RTLVKPGGEKGYTWAHYIPDKIG-GVTRGFYVL 444

Query: 434 EPEDVDTRINKRKMEIEVMQLCSI--LEAT 461
             +  + ++ + +      QL     LE+ 
Sbjct: 445 VSDVTELKLAEAEKVRLESQLQQAQKLESV 474



 Score = 48.1 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 30/263 (11%), Positives = 69/263 (26%), Gaps = 21/263 (7%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS-DILHIDPNNHIGDLLKRQNTWYGKTT 148
           D        ++   +  G    +MIG+ L ++  + L  +   ++   L  +   + +T 
Sbjct: 356 DNDLRCSFANKAYQEWFGKSPEQMIGITLPELLGEKLFAENEQYVRKALAGEPQHFERTL 415

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI-VHVNRVDNDPRALGKRLDKKFSHL 207
           + P  G   Y       +P   +    +  RGF + V          A   RL+ +    
Sbjct: 416 VKP-GGEKGYTW--AHYIP--DKIGGVT--RGFYVLVSDVTELKLAEAEKVRLESQLQQA 468

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
            +++          +D          L +        +        L+  +     S   
Sbjct: 469 QKLESVGRLAGGVAHDF--NNLLTVILGLAQLGMGELDPGDPVRGRLEGIRQAAEKSAAL 526

Query: 268 SLPEQEDFHTINLNQ------YTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
           +           +         T +Q    L+    E+ E +                  
Sbjct: 527 TQQLLGFARKQTIAPVMLDLNQTVEQMLSMLKRLVGENIEVV--WRPARELWRVKMDPTQ 584

Query: 322 TPETVDKC--PIPFFVYSHGNLF 342
             + +          +   G + 
Sbjct: 585 LDQILANLCVNARDAIDDVGRII 607



 Score = 47.3 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 36/394 (9%), Positives = 87/394 (22%), Gaps = 25/394 (6%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D      ++S       G     +IG+   DV   +           L  +         
Sbjct: 231 DRKMRYMQVSRRWQSMYGLGDRNLIGLSHYDVFPEITERWKELHRRGLAGEVLGEEADRF 290

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
              +GT  +V  ++   P Y       G   F                   ++    L +
Sbjct: 291 VRADGTVQWVRWEI--RPWYEAVDRVGGIVIF--TEDITQRKLTEEALSANERFLRMLTD 346

Query: 210 IKKGHSSVEKEKYDIFSQQSP--PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
              G  +                    +   ++  +T      + +    +  +  +   
Sbjct: 347 QLPGMVAYWDNDLRCSFANKAYQEWFGKSPEQMIGITLPELLGEKLFAENEQYVRKALAG 406

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
                E        +                +  +    +  +     +  +      + 
Sbjct: 407 EPQHFERTLVKPGGEKGYTWAHYIPDKIGGVTRGFYVLVSDVTELKLAEAEKVRLESQLQ 466

Query: 328 KCP--IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
           +          + G     N    ++     +   E+  G     D  +       +   
Sbjct: 467 QAQKLESVGRLAGGVAHDFNNLLTVILGLAQLGMGELDPG-----DPVRGRLEGIRQAAE 521

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
              +    +   AR  TI       + +      +                         
Sbjct: 522 KSAALTQQLLGFARKQTI-----APVMLDLNQTVEQMLSMLKRLVGENIEVVWRPARELW 576

Query: 446 KMEIEVMQLCSILE----ATSDGIAIINREGIIL 475
           +++++  QL  IL        D I   +  G I+
Sbjct: 577 RVKMDPTQLDQILANLCVNARDAI---DDVGRII 607


>gi|84501121|ref|ZP_00999356.1| phosphate regulon sensor histidine kinase, putative [Oceanicola
           batsensis HTCC2597]
 gi|84391188|gb|EAQ03606.1| phosphate regulon sensor histidine kinase, putative [Oceanicola
           batsensis HTCC2597]
          Length = 346

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 71/365 (19%), Positives = 138/365 (37%), Gaps = 29/365 (7%)

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
              L  +L+A      +I R   IL+ N     L G     I+ + F   +       + 
Sbjct: 3   EAFLTQLLQAIPLASVLIGRGERILAANSEAKTLLG---SGIVGRHFITAIRH---PAVL 56

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570
             +   L         +     +  +   S+              +   DI+        
Sbjct: 57  DAVEHCLGDRKTHR-ARHLTSQSGRDLTYSVTASYIDFSAGEGVLVCFDDIT-------- 107

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
                   E+    + DF+A VSHE+RTPLTA++GF E ++              +   +
Sbjct: 108 ------PVEQAGQMRRDFVANVSHELRTPLTALLGFIETLRG--PASKDPAAQQRFLGIM 159

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
           DR  + +  +V DLL +S++E+ +       V +   +      ++  A E  +      
Sbjct: 160 DREAHRMERLVRDLLSLSRVEAEERVRPVTRVDIVAILESVQKSLEPLAAEAGVAFSRID 219

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS------NEEVILRVRDT 744
                 +  D   ++Q+  N++ NA+ +   G ++ ++   +          V + VRD 
Sbjct: 220 DGTPIHVPGDEDQLRQVFTNLIENAVKYGARGERVEVTVHLSEAVPSLRGPGVEVTVRDF 279

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G G+    + +  + F ++ + +     GTGLGL + K +V+ + G+  I S P +G   
Sbjct: 280 GPGIEEIHIPRLTERFYRVDSHRSREMGGTGLGLAIVKHIVNRHRGRLRIESEPGQGCRF 339

Query: 805 EIIFP 809
            +  P
Sbjct: 340 IVTLP 344


>gi|91789987|ref|YP_550939.1| periplasmic sensor signal transduction histidine kinase
           [Polaromonas sp. JS666]
 gi|91699212|gb|ABE46041.1| periplasmic sensor signal transduction histidine kinase
           [Polaromonas sp. JS666]
          Length = 919

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 112/625 (17%), Positives = 229/625 (36%), Gaps = 40/625 (6%)

Query: 214 HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE 273
           H        D F    P         +       +    ++  E   L T   + L    
Sbjct: 314 HFPAGNVDADTFVLTLPMAQRHESLTLFVFIGGLSAATGMVIVETIALSTMICNDLVMPL 373

Query: 274 DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF 333
                 L    ++   G L    + +   +    +    A  D    ++   +    +  
Sbjct: 374 ALRIKALRLNERQDLSGLLLGIRRWAIVAILLLGYIYFRAAGDAYALVSIGLISFAAVAQ 433

Query: 334 FVYSHGNLFYA-----NPSFLLLTKYKS-------VDDIEIAGGLSTLLDAPKLSDNNAI 381
           F  +     Y      N +   L    +       +     +G L +      L     +
Sbjct: 434 FAPAIFGGIYWKGGTRNGAMAGLLGGFAVWGYTLLLPSFAKSGWLPSTFLREGLFGLELL 493

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
           +P  L+        + +   ++  N    L ++        +  +      +      + 
Sbjct: 494 RPQQLFGLSGLDEISHSLFWSLLVNIGFYLGVSLRGQPSVVETRQATAFVDVFRH-TASA 552

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
            +  ++     Q+  +L      +      G  L   RA      Y       +  +   
Sbjct: 553 ADGSRLWRGSAQVQDLL-----PLI-----GRFLGPVRAQEAFLTY----ARGRGLSSVA 598

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDI 561
           E    + + HY   +L+  L     ++ + S  +E+ L +  ++  L  +S       ++
Sbjct: 599 ELKADADLVHYAETLLAGALGGASARVMVASVVQEEPLGIDEVMNILDEASQVRAYSREL 658

Query: 562 SEWKQEKNK-----LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            E K ++ +     L  A    ++    K DF++ V+HE+RTPLT+I   SE++      
Sbjct: 659 -ELKSQELEAATAKLRAANDRLKELDRMKDDFMSTVTHELRTPLTSIRALSEILLETPQA 717

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
            L      ++   I +    +  ++N +LD++KIESG    H   + L E + E+++   
Sbjct: 718 SL--AERQKFLGIIVKEAERLTRLINQVLDMAKIESGNAEWHTSELDLREVIEESVAATY 775

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT-PSGGQIIISTTHTSNE 735
              N++ + +    A++ PRI AD   + Q+ LN+LSNA+ F  P+ GQ+ +S       
Sbjct: 776 ATFNDRHVTLTQDLASHTPRIRADRDRLIQVMLNLLSNAVKFCHPTRGQVHVSLRQEPGG 835

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            + + VRD G G++    +   + F Q+ ++   + +GTGLGLP+++ +++   G+ ++ 
Sbjct: 836 -LRVDVRDNGSGISAANQKIIFERFRQVGDTMTNKPQGTGLGLPISRHIIERFGGRLWVQ 894

Query: 796 STPAKGTLIEIIFPLYD---TSHPH 817
           S P  G       P       + P 
Sbjct: 895 SEPGNGATFSFTLPFSQGTGAAAPQ 919


>gi|153831183|ref|ZP_01983850.1| histidine protein kinase PhoR [Vibrio cholerae 623-39]
 gi|254224993|ref|ZP_04918607.1| histidine protein kinase PhoR [Vibrio cholerae V51]
 gi|297581123|ref|ZP_06943047.1| histidine protein kinase PhoR [Vibrio cholerae RC385]
 gi|99031007|gb|ABF61790.1| histidine protein kinase PhoR [Vibrio cholerae O395]
 gi|125622380|gb|EAZ50700.1| histidine protein kinase PhoR [Vibrio cholerae V51]
 gi|148873339|gb|EDL71474.1| histidine protein kinase PhoR [Vibrio cholerae 623-39]
 gi|297534439|gb|EFH73276.1| histidine protein kinase PhoR [Vibrio cholerae RC385]
          Length = 433

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 75/402 (18%), Positives = 153/402 (38%), Gaps = 30/402 (7%)

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDT-RINKRKMEIEVMQLCSILEATSDGIAI 467
           ++           +                   R  ++++   + +  +  E+  D + +
Sbjct: 54  SAWLWDEKRLTPPSGTGNWESLFNGIYRLQQRHRKKRKELTNLIRRFRNGAESLPDAVVV 113

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
              EG I+  NR    L G+   D   +P +  L          ++  +   D    LE 
Sbjct: 114 FRSEGNIVWCNRLAQHLLGFRWPDDAGQPISNLLRTP------DFIKYLKKDDFTDPLEM 167

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
                +       L + I        + + + D+++ KQ +                + +
Sbjct: 168 ----RSPLNSDRMLELRIVPYTEGE-HLMVVRDVTQLKQLEG--------------MRRN 208

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           F A VSHE+RTP+T + G+ E+   +    L  P + +    +    N +  +VN LL +
Sbjct: 209 FFANVSHELRTPMTVLQGYLEM--TEDPDVLAGPMWSKAHGVMTEQLNRMNSLVNQLLTL 266

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707
           SKIE+  M    + V +   +          + E +  +      ++ ++LAD   ++  
Sbjct: 267 SKIEASPMVELDQVVDVPAMLEVLEKEAVSLSGEAQHKLHFEVDKSL-KVLADEDQLRSA 325

Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
             N++ NA+ +TP G QI +   + + +   L V D G G+    L +  + F ++  ++
Sbjct: 326 ISNLVYNAVKYTPPGAQIDVRW-YRTGKGACLEVEDKGEGIEPQHLHRLTERFYRVDKAR 384

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
                G+GLGL + K  +  +     I+S    G+    + P
Sbjct: 385 SRDTGGSGLGLAIVKHALAHHDTHLDIYSKVGVGSKFSFVLP 426


>gi|270295813|ref|ZP_06202013.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270273217|gb|EFA19079.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 978

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 84/396 (21%), Positives = 170/396 (42%), Gaps = 28/396 (7%)

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATS---------DGIAIINREGIILSTNRAV 481
           +    +    +  +  +     +L   L             +G+     + I+   N   
Sbjct: 447 DVFAVDITARKDAENTLREINKKLEMTLGIARIIPWRWDLKEGLIYCEAQKILDHMNFTK 506

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
            K     V+ I    +   +       M+H    ++S  L+   E+  + +  E + ++ 
Sbjct: 507 EKNSTVQVDIIKASEYFRKIHPEDFERMHHVHENLISGKLQHIKEEYRIITEVEGRKITD 566

Query: 542 RI---IIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
            +    +      +        ++  I+E K+++  L  A++ A++    KS FLA +SH
Sbjct: 567 WMETNAVIDQRDKNGCPISLVGSLLLITERKRQEEALIRAREKAQESDRLKSAFLANMSH 626

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           EIRTPL AI+GFS ++              E+ + I+ +  L+L +V+D+LD+SKIE+  
Sbjct: 627 EIRTPLNAIVGFSSLL----TATENETERKEFISIIETNNQLLLQLVSDILDLSKIEANT 682

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714
           +  +++ V L++   +  + V+       + ++      +  +  +   + Q+ +N+L N
Sbjct: 683 LEFNYQNVDLNQLAKDVENTVRGRLQT-GVALQFVPEVPVCYVQTEHNRLSQVLINLLVN 741

Query: 715 AIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           A  FT  G +I+        EE+   V+DTG+G++    +K  + F ++        +GT
Sbjct: 742 AAKFTEKG-EIMFGYKIR-GEELYFYVKDTGIGISLENQKKIFERFTKVNTFI----QGT 795

Query: 775 GLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFP 809
           GLGL + K +V    G+  + S    KG+      P
Sbjct: 796 GLGLSICKNIVTKMKGRIGVESEGEGKGSTFWFTIP 831


>gi|171912720|ref|ZP_02928190.1| PAS sensor signal transduction histidine kinase [Verrucomicrobium
           spinosum DSM 4136]
          Length = 796

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 98/567 (17%), Positives = 201/567 (35%), Gaps = 40/567 (7%)

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
           LT    +   ++ +  +             ++  +  +   ++ R+        D  E  
Sbjct: 116 LTGNGEATRYRQRYLDLLGPVGNVSIMERPVRPTTLVNSCKVALRSRLRQYQVRDLLEER 175

Query: 322 TPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
               V      F  +       + N    +L   K  + I            P+  +   
Sbjct: 176 -QAVVASISDAFVTFDSAWRCTFLNEKGEVLAGRKKEELIGRCIWE----VFPEARELPI 230

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
            + V      +  +                   T   + +   +P +   +    +  + 
Sbjct: 231 YEAVQRAMVQQQNLDFE------------QYHATLNRWLEVRIYPSSRGISVFISDVTER 278

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK------LFGY--PVEDI 492
           R  + ++     +L   L A   G      +  +   N    +      +FGY  PV + 
Sbjct: 279 RHAQNELRESKARLEFALNAAQMG------DWDLNLANNTSHRSLRHDQVFGYTKPVREW 332

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
             + F   +  +    ++   +  ++ +    LE   +        +++   +       
Sbjct: 333 GLETFLEHVHPDDREEVSRKFSAAIASNESWRLECRVIWPDSSVHWIAIHGGLYHEAIGR 392

Query: 553 --CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
                 T+ DI+  K  +  L    +   +    K +FLA +SHE+R PL A+   + ++
Sbjct: 393 FPRMIGTVMDITARKDAEVALLQQTQALREADRKKDEFLAMLSHELRNPLAAV-SHAAML 451

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
            N              A  IDR    +  +++DLLD+S+I +GK++L  E +     +  
Sbjct: 452 VNDASEM---EDLHWAAGVIDRQTRQLAHLIDDLLDVSRITTGKIHLRKEVIDAAIVLDH 508

Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
           A         ++   +R  +      + AD   ++Q+ LN+L+NA  +TP+GGQI +   
Sbjct: 509 ACETAGPLMIDRGHRLRRRYLQGELWLEADATRIEQVVLNLLTNAAKYTPNGGQIEL-AA 567

Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
                EV+++V D G G+    L +  + F Q   S      G G+GL + + + + + G
Sbjct: 568 RRQEGEVVIQVCDNGTGIVPERLPEMFQLFTQGERSIARSEGGLGIGLTIVQKIAEMHGG 627

Query: 791 KFYIFS-TPAKGTLIEIIFPLYDTSHP 816
           +    S  P +G+   +  PL D   P
Sbjct: 628 RVEAVSPGPQQGSTFTVHLPLADPPAP 654


>gi|116252525|ref|YP_768363.1| two-component sensor histidine kinase transcriptional regulatory
           protein [Rhizobium leguminosarum bv. viciae 3841]
 gi|115257173|emb|CAK08268.1| putative two-component sensor histidine kinase transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 511

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 102/249 (40%), Positives = 154/249 (61%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I+E +  K+    A++ AE+ +  KS FLA +SHE+RTPL AI+GFSEV+  +  GPL N
Sbjct: 238 IAELEVAKSMSDEARRRAEEANLAKSRFLASMSHELRTPLNAILGFSEVMSAEVMGPLAN 297

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
           P Y EYA  I RSG  +LD++N++LD+S+IE+GK  L  E +SL +   + I +VQL A 
Sbjct: 298 PTYKEYAGDIHRSGQHLLDLINEILDLSRIEAGKYELSEEAISLLDITEDCIGMVQLRAR 357

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
            K I I   F   +P I AD +S++Q+ LN+LSNA+ FTP GG+I +    T+     + 
Sbjct: 358 AKNIAISDQFERQLPAIWADEKSMRQVVLNLLSNAVKFTPQGGEIHVKVGWTAGGGQYIS 417

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           ++D G G+   E+   +  FGQ   + +   +GTGLGLP+ +A++  + G+F + S   +
Sbjct: 418 IKDNGPGIPEEEIPIVLSAFGQGSIAIKSAEQGTGLGLPIVQAILAKHDGQFLLKSKLRE 477

Query: 801 GTLIEIIFP 809
           GT +  I P
Sbjct: 478 GTEVIAILP 486


>gi|88857621|ref|ZP_01132264.1| putative signal transduction histidine kinase two-component system
           with Protein-glutamate methylesterase domain
           [Pseudoalteromonas tunicata D2]
 gi|88820818|gb|EAR30630.1| putative signal transduction histidine kinase two-component system
           with Protein-glutamate methylesterase domain
           [Pseudoalteromonas tunicata D2]
          Length = 927

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 77/257 (29%), Positives = 127/257 (49%), Gaps = 11/257 (4%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E K  +  L+ +  IAE+ +  KS FLA +SHEIRTP+  ++G   ++  Q   P  NP 
Sbjct: 543 ERKTFE--LTQSVHIAEQANKAKSIFLANMSHEIRTPMNGMMGMLSIVLKQ---PSLNPD 597

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
            ++    I  S   ++ I+ND+LD SKIE+G++ +   PV L     E+  +  + + + 
Sbjct: 598 VVDKLQLIQSSAQTLMQILNDILDFSKIEAGQLTIEQAPVDLKAVFKESCDIFLMSSIKP 657

Query: 683 RILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
            +  R     N+P ++L D   ++QI +N+L+NA  FTP G  I +  ++   E +   V
Sbjct: 658 NVEFRLEGIENLPDQLLCDALRLRQIIVNLLTNAGKFTPCG-HIKVLVSY-DEEYLRFSV 715

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            DTG+G+   +       F Q   S   +  GTGLGL +   +V    G   + S   KG
Sbjct: 716 ADTGIGIAKEKQALLFNEFSQADVSTTRKYGGTGLGLAICSRLVTLLEGNIELQSEEGKG 775

Query: 802 TLIEIIFPLYDTSHPHD 818
           +   +  P+     P +
Sbjct: 776 SCFTVSLPMK---APEE 789


>gi|255034925|ref|YP_003085546.1| PAS/PAC sensor hybrid histidine kinase [Dyadobacter fermentans DSM
           18053]
 gi|254947681|gb|ACT92381.1| PAS/PAC sensor hybrid histidine kinase [Dyadobacter fermentans DSM
           18053]
          Length = 647

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 98/380 (25%), Positives = 171/380 (45%), Gaps = 21/380 (5%)

Query: 441 RINKRKMEIE-----VMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILR 494
           ++ + + EI      +    +I+  + D IA +  + G ILS N +V  + G   + +++
Sbjct: 123 KLARSQREIRDKNKLLENYATIVLNSPDIIATVEPDTGSILSINPSVEAILGISPQSLIK 182

Query: 495 KPFTVFLEQNTPSVMNHYL-TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553
                 L     S +   L            +E    G  ++   L LRI    +  +  
Sbjct: 183 TSVLDLLVDPLNSALREVLVKRSFVGGETIVVEDQFYGRLRQPVWLELRI----MYKNRL 238

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
             + +HD+ + K  +  L  A+  AEK    K  FLA +SHEIRTPL  IIG   ++   
Sbjct: 239 LFVNLHDVEKRKAHELALIDAQAQAEKARKTKESFLANMSHEIRTPLNGIIGLGNLLAAT 298

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
                 +    E  + + +S   +L+I+ND+LDISKI+ GK ++      L     + I 
Sbjct: 299 EL----SEAQAELVDMLRQSSGSLLNILNDILDISKIDEGKFSIIPTSTDLRVLGKQIID 354

Query: 674 LVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH- 731
           L+Q  A+EK++ +R     +IP  +  D   + QI LN++ NA+ FT +G  + +   H 
Sbjct: 355 LMQFKADEKKLELRLEIGKDIPDCVTVDGMRLNQILLNLVGNALKFTGTG-NVTLKMEHL 413

Query: 732 ---TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
               +   +   V DTG+GM++  L      +GQ   +   +  GTGLGL +++ +V   
Sbjct: 414 AQTAAGHTIRFAVEDTGIGMSDDHLANIFSEYGQASENISHQYGGTGLGLTISQKLVRLM 473

Query: 789 MGKFYIFSTPAKGTLIEIIF 808
             +  + S   +G+      
Sbjct: 474 GSELEVNSRFQEGSQFFFTL 493


>gi|254444196|ref|ZP_05057672.1| Two component regulator three Y motif family [Verrucomicrobiae
            bacterium DG1235]
 gi|198258504|gb|EDY82812.1| Two component regulator three Y motif family [Verrucomicrobiae
            bacterium DG1235]
          Length = 1220

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 79/239 (33%), Positives = 123/239 (51%), Gaps = 10/239 (4%)

Query: 575  KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
            KK AE+ +  KS+FLA VSHEIRTP+  IIG ++ +              E    +  SG
Sbjct: 814  KKRAERANQAKSEFLAMVSHEIRTPMNCIIGMTDNLLATPL----QKEQFEMLQAVHASG 869

Query: 635  NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
              ++ I++D+LD SKIE+GK+ L   P S ++ V +  +L     +EK I +RT  ++ +
Sbjct: 870  QSLVAIISDILDFSKIEAGKIELDSVPFSPEQTVKDVFNLFVRSCDEKNISLRTDISDEV 929

Query: 695  PRI-LADLRSVKQIALNILSNAIHFTPSGGQIIIST--THTSNEEVIL--RVRDTGVGMT 749
            P I + D   +KQ+ +N++ NA  FT  G  I IS       +  + L   V DTG+G+ 
Sbjct: 930  PDIAIGDPIRLKQVLINLVGNARKFTDQG-LITISLNQQINDDGSLTLIYTVTDTGIGIE 988

Query: 750  NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            +  ++   K F QI +S   +  GTGLGL + K +V+   G   + S    G+      
Sbjct: 989  SANMDLLFKAFSQIDSSNTRKFGGTGLGLAICKRLVNLMNGDIGVSSQTGHGSTFSFTI 1047


>gi|39726359|gb|AAR30122.1| putative histidine kinase HHK1p [Gibberella moniliformis]
          Length = 2362

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 77/258 (29%), Positives = 130/258 (50%), Gaps = 16/258 (6%)

Query: 562  SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
            ++ K  + +     K+AE+ +  KS FLA VSHE+RTPL  +IG SE++++       N 
Sbjct: 1917 TKAKNAEAEAKRNVKLAEEAAKAKSIFLANVSHELRTPLNGVIGNSELLRDSDL----NK 1972

Query: 622  RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV----QL 677
              +E A+ I  S +L+L ++ND+LD SK+E+ KM L+    + ++ V E +  V    + 
Sbjct: 1973 DQLEMADSIRVSADLLLTVINDILDFSKMEADKMKLYIIAFNPEDMVREVVRAVSYSNRE 2032

Query: 678  YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT----S 733
              ++K + I  +       I  D   + Q+  N++ N++ FT  G  I I          
Sbjct: 2033 KTSKKNVKIVQNINLPPMLIYGDPIRLHQVLGNLIGNSLKFTEDGS-ITIGARLDKETKE 2091

Query: 734  NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD-ANMGKF 792
            +  +   VRDTG+G+   +L K  +PF Q   S   +  G+GLGL + K++++    GK 
Sbjct: 2092 HATLTFWVRDTGIGIPPQQLAKLFQPFSQADASTARKYGGSGLGLSICKSLIETMMKGKI 2151

Query: 793  YIFSTPAKGTL--IEIIF 808
             + S    GT     + F
Sbjct: 2152 RLESEENVGTTAWFTVTF 2169


>gi|17231257|ref|NP_487805.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17132899|dbj|BAB75464.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 443

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 74/247 (29%), Positives = 131/247 (53%), Gaps = 2/247 (0%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E ++++ ++        + S  KS FLA +SHE+RTP+ AIIGF++++   +FG L   +
Sbjct: 152 ELERQRQQIQIQNLKLLEASRLKSQFLATMSHELRTPMNAIIGFAQILSRPKFGNLTG-Q 210

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             +    I  +G  +L ++N++LD SK+E G++ L  E   L + ++  +  ++  A  K
Sbjct: 211 QADMVERILNNGKHLLMLLNEVLDFSKLEEGRLELKPELFDLTKVINAVVMEMRSLAEAK 270

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           ++ +          ++ D   +KQI +N+LSNAI FT SG  I I         V ++V+
Sbjct: 271 KLSLLVQIDLQNSLLVNDPVRIKQILINLLSNAIKFTDSGS-IWIDVKDLPGSWVEIKVK 329

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG+G+   + +   + F Q+  S   +  GTGLGL +  ++V    GK ++ S    G+
Sbjct: 330 DTGIGIAAKDFKYIFEAFRQVDQSITRKYPGTGLGLAIIDSLVQMMSGKIFLESQLGVGS 389

Query: 803 LIEIIFP 809
           +  I  P
Sbjct: 390 IFTITLP 396


>gi|229529315|ref|ZP_04418705.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae 12129(1)]
 gi|229333089|gb|EEN98575.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae 12129(1)]
          Length = 1176

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 89/382 (23%), Positives = 159/382 (41%), Gaps = 24/382 (6%)

Query: 441 RINKRKMEIEVMQLC---SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP- 496
           R +++  ++   QL     +L+A    I I + +  ++ TN A  K++    E    +P 
Sbjct: 511 RSSEQVAKLSTEQLRWLTELLDAIPSMIFISDEKDEVVLTNAAYRKIYHTCCEKGCVQPQ 570

Query: 497 --FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554
              +     +        + +    +         +             I   +     Y
Sbjct: 571 PECSFLALPDQHEAEFSIIIQAPKSNCSIGEHYFHVTRRA---------ISHPINQRKYY 621

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
               +DI+E K+ +  L  + + A +    ++ FLA VSHE+RTP+ A++G  E++ ++ 
Sbjct: 622 LTLFNDITELKETEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGLMEILASR- 680

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
              L +            S   +   VND+LD SKIE+ ++ L     +L + +   +  
Sbjct: 681 ---LKSSESQLLLTNAISSAERLKLHVNDILDFSKIEAQQLQLDIGLYNLADELGPLLRG 737

Query: 675 VQLYANEKRILIRTSFANN-IPRILADLRSVKQIALNILSNAIHFTPSGGQI-IISTTHT 732
            +  A  K I     ++ N +     D     QI  N+LSNAI FT  G  +  I     
Sbjct: 738 FEASAQLKEIEFDVIWSPNSLLLANFDALRFNQIVTNLLSNAIKFTDQGRVVFKIDVAPE 797

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
               + + V DTG GMT  ++E    PF Q  ++   R  GTGLG+ +   +++   GK 
Sbjct: 798 ---MLTIVVEDTGCGMTQTQIESLFVPFAQADSTITRRFGGTGLGMSIVANLIELMNGKI 854

Query: 793 YIFSTPAKGTLIEIIFPLYDTS 814
            + S   +GT I++  PL   +
Sbjct: 855 KVKSEFEQGTQIQVNLPLVTQT 876


>gi|153871366|ref|ZP_02000554.1| multi-sensor hybrid histidine kinase [Beggiatoa sp. PS]
 gi|152072169|gb|EDN69447.1| multi-sensor hybrid histidine kinase [Beggiatoa sp. PS]
          Length = 546

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 96/508 (18%), Positives = 196/508 (38%), Gaps = 29/508 (5%)

Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
             ++T+   L   +      +  F   N            L+N   +    ++     + 
Sbjct: 23  SAIETQIQALKQGQFEHFRTEMRFIHKNGYVLWGDISCSALRNKQGQLEAIINIITDITE 82

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
               +E  +              V   G     N ++     Y     +E     S    
Sbjct: 83  RKQIEEERDRLFNLSLDMQC--IVSFDGYFLELNIAWEQTLGYSRQQLMEKPFLTS---- 136

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
              +  N+       +       +     +  +    +   +++  +   +Q        
Sbjct: 137 ---VHPNDEQATAQFFEQLLQGKSVQGFENRYRRQDSSYCRLSWNAYPLVDQQ----RFY 189

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
            I  +  + +  +  + +   +  +I++  +D I     +G +   N A    F     +
Sbjct: 190 AIIRDITEQKRTEETIRLNEHRYRAIVQDQTDLICRYLPDGRLSFVNEAYCHYFSTTEAE 249

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEI-LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
           ++   F   L      ++++ + ++ L   +R  +E  ++      +      I + L  
Sbjct: 250 LIGHYFAPLLYDEMQEIISYMMADLSLEKPVRTEMEHHSILK---GEHCWQHWIGRALFD 306

Query: 551 SS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
            +     Y +   DI+E KQ + +L  AK+ AE  +  KS+FLA +SHEIRTP+  ++G 
Sbjct: 307 ENNKLFEYQVVGRDITERKQAEEELRRAKEAAEAATRAKSEFLANMSHEIRTPMNGVVGM 366

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
           +E++ N         +  EYA  I +S + +  I+ND+LD SKIE+G+++L      L+E
Sbjct: 367 TELLLNTELSS----KQREYAEIIHQSTDALQTIINDILDFSKIEAGRLSLVLSVFDLEE 422

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ- 724
           AV +   L+   A  K   +   +A + PR  + D   ++QI  N++ NAI FT  G   
Sbjct: 423 AVLKVARLLSAGAESKGFELIVRYAPDAPRHFVGDAGRIRQILTNLVGNAIKFTQQGHVL 482

Query: 725 --IIISTTHTSNEEVILRVRDTGVGMTN 750
             +        +  + +++ DTG+G+  
Sbjct: 483 LDVDCQIQTIESACMSIQIEDTGIGIPQ 510



 Score = 65.8 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 20/232 (8%), Positives = 61/232 (26%), Gaps = 11/232 (4%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151
            GY  E++    +T+G    +++                    + L +  +  G    + 
Sbjct: 107 DGYFLELNIAWEQTLGYSRQQLMEKPFLTSVHPNDEQATAQFFEQLLQGKSVQGFENRYR 166

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
            + ++    +   A P+  +       R + I+             +  + ++  + + +
Sbjct: 167 RQDSSY-CRLSWNAYPLVDQQ------RFYAIIRDITEQKRTEETIRLNEHRYRAIVQDQ 219

Query: 212 KGHSSVEKEKYDIFSQQSP---PPHLRMKNKVSSLTEYYAHKD-DVLKTEKYPLLTSEES 267
                       +                  +        + +   + +     L+ E+ 
Sbjct: 220 TDLICRYLPDGRLSFVNEAYCHYFSTTEAELIGHYFAPLLYDEMQEIISYMMADLSLEKP 279

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
              E E    +      +      L + + + FEY       +     +E  
Sbjct: 280 VRTEMEHHSILKGEHCWQHWIGRALFDENNKLFEYQVVGRDITERKQAEEEL 331



 Score = 43.1 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 26/258 (10%), Positives = 56/258 (21%), Gaps = 27/258 (10%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL- 149
             G L  ++E           ++IG     +      +  +++   L  +     +    
Sbjct: 228 PDGRLSFVNEAYCHYFSTTEAELIGHYFAPLLYDEMQEIISYMMADLSLEKPVRTEMEHH 287

Query: 150 -WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                       I      ++  N +   ++  G               +R  +      
Sbjct: 288 SILKGEHCWQHWI---GRALFDENNKLFEYQVVG--RDITERKQAEEELRRAKEAAEAAT 342

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE-ES 267
             K    +    +          P   +      L             E     T   ++
Sbjct: 343 RAKSEFLANMSHEIR-------TPMNGVVGMTELLLNTELSSKQREYAEIIHQSTDALQT 395

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
            + +  DF  I   + +       L+    +    LS                     V 
Sbjct: 396 IINDILDFSKIEAGRLSLVLSVFDLEEAVLKVARLLS----------AGAESKGFELIVR 445

Query: 328 KCPIP--FFVYSHGNLFY 343
             P     FV   G +  
Sbjct: 446 YAPDAPRHFVGDAGRIRQ 463


>gi|108807080|ref|YP_650996.1| PAS [Yersinia pestis Antiqua]
 gi|108812985|ref|YP_648752.1| PAS [Yersinia pestis Nepal516]
 gi|166211373|ref|ZP_02237408.1| sensory box histidine kinase [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167400352|ref|ZP_02305865.1| sensory box histidine kinase [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167424021|ref|ZP_02315774.1| sensory box histidine kinase [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|294503176|ref|YP_003567238.1| Pas [Yersinia pestis Z176003]
 gi|108776633|gb|ABG19152.1| PAS/PAC sensor signal transduction histidine kinase [Yersinia
           pestis Nepal516]
 gi|108778993|gb|ABG13051.1| PAS/PAC sensor signal transduction histidine kinase [Yersinia
           pestis Antiqua]
 gi|166207144|gb|EDR51624.1| sensory box histidine kinase [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167050301|gb|EDR61709.1| sensory box histidine kinase [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167056870|gb|EDR66633.1| sensory box histidine kinase [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|262361213|gb|ACY57934.1| PAS protein [Yersinia pestis D106004]
 gi|294353635|gb|ADE63976.1| Pas [Yersinia pestis Z176003]
          Length = 604

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 82/376 (21%), Positives = 162/376 (43%), Gaps = 28/376 (7%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           ++++R+++        I+     G+   N E +I   N    K+FG   + +  +     
Sbjct: 234 QLSRRQLQDSKAISTEIINNLPIGLITTNEEQLISVVNHTAEKIFGISKDILTGQNIHQA 293

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL---- 556
           L      ++        S   +  +E       KE  ++ L I +  +   +   L    
Sbjct: 294 LPPEWNLLVK------KSQRHQPVIEHEIDYKLKEGLIIPLSISVANIVNHNGSFLGNIF 347

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
              D+ E +Q + ++   +K+         +  A V+HEIR PL++I GF++    +   
Sbjct: 348 IFRDMREVRQLQEEIRRKEKLV-----AIGNLAAGVAHEIRNPLSSIKGFAKYF--EGHS 400

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
           P G+    E A  + +  + +   V +LL + +      +L  + V+++E ++ ++ L++
Sbjct: 401 PQGSEEQ-ELAKVMIKEVDRLNRAVTELLGLVRPS----DLRIQLVNINEIIAHSLHLIR 455

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
             A+ K+I I+     N+PR+  D     Q  LN+  NAI      G + I+       +
Sbjct: 456 QDADSKKITIQFISNENLPRVEIDPDRFTQALLNLYLNAIQAMGRAGTLEIALALVEESK 515

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           + + V DTG G+   +LE    P+     S      GTGLGL + + +++ + G+  + S
Sbjct: 516 LRISVIDTGKGIRAEDLENIFNPYFTTKAS------GTGLGLAIVQKVIEEHQGRITVTS 569

Query: 797 TPAKGTLIEIIFPLYD 812
            P  GT  ++  PL  
Sbjct: 570 HPQSGTRFDMTIPLVQ 585



 Score = 37.7 bits (86), Expect = 8.7,   Method: Composition-based stats.
 Identities = 31/257 (12%), Positives = 61/257 (23%), Gaps = 11/257 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            +    +  ++    K  G     + G  +            N +    +R         
Sbjct: 261 TNEEQLISVVNHTAEKIFGISKDILTGQNIHQALPPEW----NLLVKKSQRHQPVIEHEI 316

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK-FSHL 207
            + ++   L +P+ ++   I + N  F G     I    R     +   +R +K      
Sbjct: 317 DYKLK-EGLIIPLSISVANIVNHNGSFLG--NIFIFRDMREVRQLQEEIRRKEKLVAIGN 373

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
                 H             +    H    ++   L +    + D L      LL     
Sbjct: 374 LAAGVAHEIRNPLSSIKGFAKYFEGHSPQGSEEQELAKVMIKEVDRLNRAVTELL---GL 430

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
             P       +N+N+          Q+   +        N        D           
Sbjct: 431 VRPSDLRIQLVNINEIIAHSLHLIRQDADSKKITIQFISNENLPRVEIDPDRFTQALLNL 490

Query: 328 KCPIPFFVYSHGNLFYA 344
                  +   G L  A
Sbjct: 491 YLNAIQAMGRAGTLEIA 507


>gi|83311743|ref|YP_422007.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82946584|dbj|BAE51448.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 863

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 90/669 (13%), Positives = 215/669 (32%), Gaps = 62/669 (9%)

Query: 172 NREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231
           +R   GF G G+       +          ++ +    +        +    +   ++  
Sbjct: 232 DRYMDGFEGSGV-----TVSSAGLEELTSARRIASTGWVLVARLPTAEAFEPVADIKTRL 286

Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291
                   ++SL   +      L     PL  +        +        + ++    G 
Sbjct: 287 FAALAGLGLTSLGLLWLVLRSALS----PLHRATGRIQAMVDGNAPFEAVEISRGDEVGR 342

Query: 292 LQNNSKESFEYLSHRNHP-SLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLL 350
           +          ++  +                 + V+    P      G +  AN +   
Sbjct: 343 MIGAFNALQAKVAAADVALREREGLYHALFRGCKAVELLIDP---AEDGRIIDANRAAEA 399

Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
              +     + +      +LD   +        +     +R       RL + +      
Sbjct: 400 YYGWSHDQLLSMRISEINILDRAAIIAEMHKAELE----ERDHFDFRHRLASGEVRDVEV 455

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470
                       Q         I  +    R  +R++   +    ++L+     I     
Sbjct: 456 W-------SGPVQVTGRQLLYSIVHDVTARRAAEREVRSLLAFRRAVLDGAGSSIVATAV 508

Query: 471 EGIILSTNRAVSKLFGYPVEDILRK-----------------PFTVFLEQNTPSVMNHYL 513
           +G IL  N    +  GY  E+++ +                   +  L +        ++
Sbjct: 509 DGTILLFNPTAERWLGYGAEEVVGRMTPAAFHDSEEVSQRVARLSQELGREVEPGFECFI 568

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKN 569
            ++L      +         K+     + + +  L         +     DIS     + 
Sbjct: 569 AKVLDSGKPDSG--EWTYVRKDGSRFRVLLTVTALYDEEGVLSGFLGVAQDISARLSIEK 626

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L       ++ ++   +F    SH++R PL  I  +   +  +R G   +    ++  +
Sbjct: 627 EL-------KRSNAELENFAYVASHDLRQPLRMISSYIA-LLQRRLGDALDQDCQDFIGF 678

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
                  +  ++ DLL  S++  G+       V+L E V  A + +     E    +   
Sbjct: 679 AVGGAQRMDHMITDLLQYSRL--GRSGTPPAAVNLAEVVKLAQANLGALIEETGAAVTV- 735

Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS-NEEVILRVRDTGVGM 748
            A  +P +  +   ++++  N++SNA+ F   G   ++  T  +  +E I+ VRD G+G+
Sbjct: 736 -AEGLPTVRGNEVELERLFQNLISNAVKFQAQGRLPLVEITWRATADEWIISVRDNGIGI 794

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
                +K  + F ++   +  +  G+G+GL   + + + + G+ ++ S P +G+  ++  
Sbjct: 795 DEAGRQKLFQIFQRL--VRLDQYPGSGIGLASCRKIAEHHGGRIWVESQPGEGSTFQVAL 852

Query: 809 PLYDTSHPH 817
           P+      H
Sbjct: 853 PVSGPDESH 861



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/297 (8%), Positives = 75/297 (25%), Gaps = 31/297 (10%)

Query: 89  IDA--HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK 146
           ID    G + + +       G    +++ MR+ +++    +D    I ++ K +      
Sbjct: 382 IDPAEDGRIIDANRAAEAYYGWSHDQLLSMRISEINI---LDRAAIIAEMHKAELEERDH 438

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                   +     +++ + P+    R+      + IVH            + L      
Sbjct: 439 FDFRHRLASGEVRDVEVWSGPVQVTGRQLL----YSIVHDVTARRAAEREVRSLLAFRRA 494

Query: 207 LHEIKKGHSSVEKEKYDIF---SQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
           + +              I               +  V  +T    H  + +      L  
Sbjct: 495 VLDGAGSSIVATAVDGTILLFNPTAERWLGYGAEEVVGRMTPAAFHDSEEVSQRVARLSQ 554

Query: 264 SEES------------------SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
                                     +  +   + +++        L +       +L  
Sbjct: 555 ELGREVEPGFECFIAKVLDSGKPDSGEWTYVRKDGSRFRVLLTVTALYDEEGVLSGFLGV 614

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEI 362
               S     ++    +   ++        +          S++ L + +  D ++ 
Sbjct: 615 AQDISARLSIEKELKRSNAELENFAY-VASHDLRQPLRMISSYIALLQRRLGDALDQ 670



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/269 (12%), Positives = 69/269 (25%), Gaps = 27/269 (10%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGM--------------RLCDVSDILHIDPNNH----I 133
            G +   +    + +G  A +++G               R+  +S  L  +        I
Sbjct: 509 DGTILLFNPTAERWLGYGAEEVVGRMTPAAFHDSEEVSQRVARLSQELGREVEPGFECFI 568

Query: 134 GDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193
             +L       G+ T    +G+   V + + AL  Y      SGF G       +  +  
Sbjct: 569 AKVLDSGKPDSGEWTYVRKDGSRFRVLLTVTAL--YDEEGVLSGFLGVA-----QDISAR 621

Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253
            ++ K L +  + L       S   ++   + S        R+ + +            V
Sbjct: 622 LSIEKELKRSNAELENFAYVASHDLRQPLRMISSYIALLQRRLGDAL-DQDCQDFIGFAV 680

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
              ++   + ++           T        +       N      E  +         
Sbjct: 681 GGAQRMDHMITDLLQYSRLGRSGTPPAAVNLAEVVKLAQANLGALIEETGAAVTVAEGLP 740

Query: 314 YFDEGENLTPETVDKC-PIPFFVYSHGNL 341
                E                  + G L
Sbjct: 741 TVRGNEVELERLFQNLISNAVKFQAQGRL 769


>gi|62289544|ref|YP_221337.1| sensor histidine kinase [Brucella abortus bv. 1 str. 9-941]
 gi|82699473|ref|YP_414047.1| ATPase-like ATP-binding protein [Brucella melitensis biovar Abortus
           2308]
 gi|189023801|ref|YP_001934569.1| sensor histidine kinase [Brucella abortus S19]
 gi|237815042|ref|ZP_04594040.1| sensor histidine kinase [Brucella abortus str. 2308 A]
 gi|254688862|ref|ZP_05152116.1| sensor histidine kinase [Brucella abortus bv. 6 str. 870]
 gi|254696993|ref|ZP_05158821.1| sensor histidine kinase [Brucella abortus bv. 2 str. 86/8/59]
 gi|254729894|ref|ZP_05188472.1| sensor histidine kinase [Brucella abortus bv. 4 str. 292]
 gi|256257110|ref|ZP_05462646.1| sensor histidine kinase [Brucella abortus bv. 9 str. C68]
 gi|260545699|ref|ZP_05821440.1| sensor histidine kinase [Brucella abortus NCTC 8038]
 gi|297247957|ref|ZP_06931675.1| two-component system, PleD family, sensor histidine kinase DivJ
           [Brucella abortus bv. 5 str. B3196]
 gi|62195676|gb|AAX73976.1| sensor histidine kinase [Brucella abortus bv. 1 str. 9-941]
 gi|82615574|emb|CAJ10557.1| ATP-binding region, ATPase-like:Histidine kinase A,
           N-terminal:Bacterial sensor protein,
           C-terminal:Histidine kinase [Brucella melitensis biovar
           Abortus 2308]
 gi|189019373|gb|ACD72095.1| sensor histidine kinase [Brucella abortus S19]
 gi|237789879|gb|EEP64089.1| sensor histidine kinase [Brucella abortus str. 2308 A]
 gi|260097106|gb|EEW80981.1| sensor histidine kinase [Brucella abortus NCTC 8038]
 gi|297175126|gb|EFH34473.1| two-component system, PleD family, sensor histidine kinase DivJ
           [Brucella abortus bv. 5 str. B3196]
          Length = 609

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 92/349 (26%), Positives = 168/349 (48%), Gaps = 4/349 (1%)

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
             ++ EGI+ S +   +KL G   + +        +           L ++ +    + +
Sbjct: 211 FGLDIEGIVSSVDGETAKLLGVQPKMLEGTALIDRVHVADRVQYLSLLADLRAGMATRKV 270

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
           +            +      +        +L    +   ++  ++++  K   E E   K
Sbjct: 271 DVRLRSIE-NGNPVFRAYRFEGAGSDRAITLIGRSLEGEQKLLDEIAMLKAELESERIGK 329

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
              LA VSHE+RTPL +IIGFS+++ ++  G L + R  EYA  I +SG+ +L++VN +L
Sbjct: 330 GRLLATVSHELRTPLNSIIGFSDMLTHEIGGKLASDRQREYAGLIHQSGHYLLELVNAVL 389

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
           D S++E+G  ++  +     +AV    +++   A +K +       N +  ++AD R+V+
Sbjct: 390 DNSRLETGTYSIAPQSFVFRDAVEMCTAVMLPQAEKKGVAFCHRVGNGVGELVADRRAVQ 449

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNE---EVILRVRDTGVGMTNYELEKAMKPFGQ 762
           QI LN+ +NA+ FT SGG + I       +    +   V DTG+G+   +L++   PF +
Sbjct: 450 QILLNLATNAVKFTQSGGCVTIDAARVMADGCPMLEFSVSDTGIGIEPEDLQRIGTPFVR 509

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
             NS     EG+GLGL + K +V+ + G   + S P +GT++ I  PL 
Sbjct: 510 AGNSYTQAQEGSGLGLSVVKGLVERHQGSMQLKSRPGEGTVVMIRLPLA 558


>gi|299532147|ref|ZP_07045541.1| PAS/PAC sensor hybrid histidine kinase [Comamonas testosteroni S44]
 gi|298719809|gb|EFI60772.1| PAS/PAC sensor hybrid histidine kinase [Comamonas testosteroni S44]
          Length = 716

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 101/596 (16%), Positives = 202/596 (33%), Gaps = 70/596 (11%)

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
                L  + +  +PE ED     + +    Q+   LQN      + ++           
Sbjct: 19  AAPLGLSANTQPLVPEDEDPLQALVAELRNYQHELELQNEVLNYSQAVAESASER----- 73

Query: 316 DEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIE----------IAG 364
                         P+P  V      +  AN       +    D +            A 
Sbjct: 74  ------FETLFASIPLPLLVVDEYDMVVQANAMAHRAFQPTEKDRLLINFKPFVHVNDAE 127

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH--TIQWNRENSLAMTFIPFEKAN 422
            ++T  +  K      +  V+   ++   +     +    +      +            
Sbjct: 128 RVTTAFEQAKAMGRAEVHEVLFQITEEFELCGDLHVAGVVVPQQNGPATWQYLCAVVNQG 187

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
                     +  E    +   +++     +L S++ +  D I  +++   I   N   +
Sbjct: 188 P---------LLAERKALQERNQQLYASERRLESVINSALDAIICVDQHQRITVFNPTAA 238

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
            LF    +D L  P   FL     ++    LT    L           G T   + + + 
Sbjct: 239 ALFLCSPQDALGSPLERFLPDAARALAFSSLTTQAVLG-------EMTGLTLSGREIPME 291

Query: 543 IIIKKLPFSSCYSLTM--HDISEWKQEKNKLSHAKKIAEKE--SSHKSDFLARVSHEIRT 598
           I +     SS  + T+   D++   + + + +  +    +             ++H+   
Sbjct: 292 ISVSFEHHSSGDTTTIFARDLTSRNRAEAQRNALETQLRESHKMQAVGTMAGGIAHDFNN 351

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
            + AI+G  E+ K    G   NP  +E    I+++G    D+V  +L  S+ +       
Sbjct: 352 IVGAILGNVELAKADSCG---NPAAMESLREIEKAGRRARDLVRQILTFSRND----LPE 404

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718
             PV + E +S+   L+++      I ++   +N++P +LAD   V+Q   N+ +NA+  
Sbjct: 405 RRPVQVQEVMSDTARLLRVTLPP-SIELQVQESNDLPPLLADPTQVEQALFNLCNNAMQA 463

Query: 719 TPSGGQII--------------ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764
             S   II                      E ++  V+D+G GM      +  +PF    
Sbjct: 464 IGSQRGIIQMRAMRIAPDSYQCERLGLAVAEYLVFMVQDSGPGMDVATQRRIFEPFFTTK 523

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820
                 G+GTGLGL +   ++  + G   + S   +G+   + FPL D +  H  +
Sbjct: 524 P----VGQGTGLGLSVVHGVMRTHGGAVDVHSELGQGSCFTLYFPLSDPTSSHSAL 575



 Score = 37.7 bits (86), Expect = 8.0,   Method: Composition-based stats.
 Identities = 24/237 (10%), Positives = 58/237 (24%), Gaps = 13/237 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D H  +   +              +G  L         D    +           G+ T
Sbjct: 224 VDQHQRITVFNPTAAALFLCSPQDALGSPLE----RFLPDAARALAFSSLTTQAVLGEMT 279

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
              + G    +P++++    +  + + +              N   A    L+ +    H
Sbjct: 280 GLTLSGR--EIPMEISVSFEHHSSGDTTTI----FARDLTSRNRAEAQRNALETQLRESH 333

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           +++   +      +D  +            K  S     A +      +           
Sbjct: 334 KMQAVGTMAGGIAHDFNNIVGAILGNVELAKADSCGNPAAMESLREIEKAGRRARDLVRQ 393

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
           +     F   +L +    Q    + + ++     L       +    D    L   T
Sbjct: 394 I---LTFSRNDLPERRPVQVQEVMSDTARLLRVTLPPSIELQVQESNDLPPLLADPT 447


>gi|298675068|ref|YP_003726818.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalobium evestigatum Z-7303]
 gi|298288056|gb|ADI74022.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalobium evestigatum Z-7303]
          Length = 797

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 73/502 (14%), Positives = 180/502 (35%), Gaps = 31/502 (6%)

Query: 314 YFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
             D+      + +D      + ++        N        ++  D          L   
Sbjct: 317 EQDDKTRKMEKVIDNIDTHIWYFADRRTYGLVNKPHANFFGFRKED----------LEYN 366

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW---NRENSLAMTFIPFEKANQFPENMP 429
                +      ++           +RL T +           ++     + +   +   
Sbjct: 367 DIYDVHLKQTAYLIKGLSDYVFENKSRLQTTEKLINKNGELRNLSITLTPEFDYNGDVDY 426

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
                 +  +   +K+++E   ++  ++ E   D + + + +G  L  N    +  GY  
Sbjct: 427 VICSGEDITEHEKSKKRIEESEIRYRTLFEDLIDAVLVQDLDGNFLDVNLTACEFLGYSK 486

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI--IIKK 547
            DIL+  +           +N +  ++            T     +   +S+ +     +
Sbjct: 487 ADILKMGYKDIDALEQVGNLNAFENDLYRHGRAV---FETKYIKNDGSTISVEVNSRFIQ 543

Query: 548 LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
                   L   DI+  K  + KL       E  +  K  F   + H++  P   + GF+
Sbjct: 544 YQGKPAILLVARDITGRKNAEEKLQEYADKLEHSNKLKDMFTDILRHDLLNPAGVVKGFT 603

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
           +++ +       +   ++  N I  S   +++++ +    +K+++ + +L FE   +   
Sbjct: 604 QLLISME----NDDYKLDVLNKIKASNEKLIELIQNASYFAKLDAME-DLEFEKQDISAI 658

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727
           +   +S  +  A +K I I        P I+ +   ++Q+  N+LSNA+ ++P   ++II
Sbjct: 659 LKSVVSDFEQQAKDKNIDIEFLAEGEYPAII-NPV-MEQVFANLLSNAVKYSPENSRVII 716

Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
                  +   +   D G G+ + + E     F ++        +G+GLGL + K +++ 
Sbjct: 717 DID-DIGKFWKVSFTDFGEGIPDEDKETIFTRFQRLEKD---SVKGSGLGLAIVKQIIEL 772

Query: 788 NMGKFYIFSTP-AKGTLIEIIF 808
           + G+  +   P  +G++  +  
Sbjct: 773 HDGEVGVDDNPEGRGSVFWVTL 794



 Score = 70.8 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 45/386 (11%), Positives = 105/386 (27%), Gaps = 42/386 (10%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            ++ D++G + + ++ L     +   K+IG+ +   +  ++ +  N I + L     +Y 
Sbjct: 216 VFSTDSNGEIIQCNKYLIDITKSSKEKIIGLNI--FNLPVNSEIKNCIRNALDGYTQFYE 273

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
                 + G NL +       P  S + +  G    G +       D +    R  +K  
Sbjct: 274 GEYKTVLTGKNLKIRAYF--TPDTSEDGKIVGC--IGTITDLTGKTDEQDDKTRKMEKVI 329

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
              +    + +  +    +    +     R ++   +       K      +       E
Sbjct: 330 DNIDTHIWYFADRRTYGLVNKPHANFFGFRKEDLEYNDIYDVHLKQTAYLIKGLSDYVFE 389

Query: 266 ESS-LPEQEDFHTINLNQYTKKQYFGTLQNNSKESF----EYLSHRNHPSLSAYFDEGEN 320
             S L   E     N              + + +             H       +E E 
Sbjct: 390 NKSRLQTTEKLINKNGELRNLSITLTPEFDYNGDVDYVICSGEDITEHEKSKKRIEESEI 449

Query: 321 LTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYK----------SVDDIEIAGGLSTL 369
                 +       V    GN    N +      Y            +D +E  G L+  
Sbjct: 450 RYRTLFEDLIDAVLVQDLDGNFLDVNLTACEFLGYSKADILKMGYKDIDALEQVGNLNAF 509

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
            +          +   +   D + I+       IQ+  + ++ +                
Sbjct: 510 ENDLYRHGRAVFETKYIKN-DGSTISVEVNSRFIQYQGKPAILLVAR------------- 555

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLC 455
                 +    +  + K++    +L 
Sbjct: 556 ------DITGRKNAEEKLQEYADKLE 575



 Score = 55.0 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 32/271 (11%), Positives = 81/271 (29%), Gaps = 20/271 (7%)

Query: 314 YFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
             ++ E      ++  P+  F    +G +   N   + +TK  S + I      +     
Sbjct: 197 ALEQSEKRHRSLIENLPLGVFSTDSNGEIIQCNKYLIDITK-SSKEKIIGLNIFN----- 250

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
             L  N+ IK  +    D           T+      +L +        ++  + +   G
Sbjct: 251 --LPVNSEIKNCIRNALDGYTQFYEGEYKTVLT--GKNLKIRAYFTPDTSEDGKIVGCIG 306

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
              +       +   + +  ++  +++     I            N+  +  FG+  ED+
Sbjct: 307 TITDLTGKTDEQ---DDKTRKMEKVIDNIDTHIWYFADRRTYGLVNKPHANFFGFRKEDL 363

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL--PF 550
                     + T  ++      +     R    +  +    E + LS+ +  +      
Sbjct: 364 EYNDIYDVHLKQTAYLIKGLSDYVFENKSRLQTTEKLINKNGELRNLSITLTPEFDYNGD 423

Query: 551 SSCYSLTMHDISEW----KQEKNKLSHAKKI 577
                 +  DI+E     K+ +      + +
Sbjct: 424 VDYVICSGEDITEHEKSKKRIEESEIRYRTL 454



 Score = 48.5 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/144 (11%), Positives = 43/144 (29%), Gaps = 6/144 (4%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +I    +E    +  S++E    G+   +  G I+  N+ +  +     E I+       
Sbjct: 192 KIADNALEQSEKRHRSLIENLPLGVFSTDSNGEIIQCNKYLIDITKSSKEKIIGLNIFNL 251

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTM 558
                 S + + +   L    +    +     T +   +                   T+
Sbjct: 252 ---PVNSEIKNCIRNALDGYTQFYEGEYKTVLTGKNLKIRAYFTPDTSEDGKIVGCIGTI 308

Query: 559 HDISEWKQEKNKLSHAKKIAEKES 582
            D++  K ++      K     ++
Sbjct: 309 TDLTG-KTDEQDDKTRKMEKVIDN 331



 Score = 43.1 bits (100), Expect = 0.21,   Method: Composition-based stats.
 Identities = 17/136 (12%), Positives = 44/136 (32%), Gaps = 14/136 (10%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D  G   +++    + +G     ++ M   D+  +  +   N   + L R      +T  
Sbjct: 466 DLDGNFLDVNLTACEFLGYSKADILKMGYKDIDALEQVGNLNAFENDLYRHGRAVFETKY 525

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRG----FGIVHVNRVDNDPRALGKRLDKKFS 205
              +G+ + V +          N  F  ++G      +        +     +    K  
Sbjct: 526 IKNDGSTISVEV----------NSRFIQYQGKPAILLVARDITGRKNAEEKLQEYADKLE 575

Query: 206 HLHEIKKGHSSVEKEK 221
           H +++K   + + +  
Sbjct: 576 HSNKLKDMFTDILRHD 591


>gi|295398525|ref|ZP_06808559.1| two component sensor histidine kinase [Aerococcus viridans ATCC
           11563]
 gi|294973248|gb|EFG49041.1| two component sensor histidine kinase [Aerococcus viridans ATCC
           11563]
          Length = 618

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 71/377 (18%), Positives = 164/377 (43%), Gaps = 16/377 (4%)

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
           +  + + ++  +  ++  +++A   G+ +++++ I+   N A+ ++ G   E I  + F 
Sbjct: 236 ELALQEFQITNQTQRMNKLVDAMMLGVVMVDKDHIVRLANPAIYEILGLE-EQIEGRRFE 294

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS--L 556
             L+      M +      +   +Q + +        E +L + II         Y    
Sbjct: 295 EVLQSYRLVQMLN-----QASKTKQKINEEIYLYYPREVILDVNIIHLSYEEVDAYFDTE 349

Query: 557 TMHDISEWKQEKN--KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
           T  +++     +    L +           +SDF++  SHE++TP+TA+ GF+E + +  
Sbjct: 350 TNEELTNPNDSEQIILLIYDITSIRHLEKVRSDFISNASHELKTPVTALQGFTEALLDGA 409

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                +   +E+   + +  N +  ++ D+LD++KIE  ++    E +  DE V +    
Sbjct: 410 I--EDHDTAVEFVKIMQKESNRLGSLIKDILDLAKIEQDQVQQTTELLEADELVEDVFQH 467

Query: 675 VQLYANEKRILIRTSFANNIPRI--LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
           +   A +K I +     N+ P +    +   + Q+  N++ NAI +    G + +  +  
Sbjct: 468 LSGRAQDKHINLVKD-DNSQPDVSFRGERGRILQVLTNLIHNAIIYNNPYGFVKVFIS-E 525

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
               +  ++ D G+G+   +L +  + F ++   +     GTGLGL + + +++   G  
Sbjct: 526 QENMIQFKISDNGIGIPQEDLPRIFERFYRVSKDRSTASGGTGLGLSIVRNILEHMGGGI 585

Query: 793 YIFSTPAKGTLIEIIFP 809
            + S   +GT   +  P
Sbjct: 586 EVDSVFGRGTSFTVYIP 602


>gi|229894116|ref|ZP_04509302.1| two component sensor kinase/response regulator protein RcsC
           [Yersinia pestis Pestoides A]
 gi|229704001|gb|EEO91014.1| two component sensor kinase/response regulator protein RcsC
           [Yersinia pestis Pestoides A]
          Length = 704

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 95/371 (25%), Positives = 160/371 (43%), Gaps = 29/371 (7%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
             ++E        I+ +   GI+I+   +G  + +N                  +   L 
Sbjct: 106 ALRLEEHEQFNRKIVASAPVGISILRISDGTNILSNELA-------------HNYISLLT 152

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
                     +T I+       ++ +    T     L +  +  +          + D+S
Sbjct: 153 NEDR----ERITRIICERQANFVDVM----TSNNNNLQISFVHSRYRNEDVAICVLVDVS 204

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
              + +  L      AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R
Sbjct: 205 ARVKMEESLQEMATAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPQGVDR 263

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                  ++ S  L+L I++D+LD SKIES ++ +     S  E ++   +       +K
Sbjct: 264 ---LVTAMNNSSGLLLKIISDILDFSKIESEQLKIEPSEFSTVEVITHITANYLPLVVKK 320

Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
           R+ +      ++PR I  D   ++Q+  N+L+NAI FT +G  II+         +  RV
Sbjct: 321 RLGLYCFIEPDVPRLIEGDPVRLQQVISNLLNNAIKFTDTG-CIILQVRVRD-CYLEFRV 378

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
           RDTGVG+ + E+ +   PF Q+    Q   +GTGLGL + + +V+   G   + S    G
Sbjct: 379 RDTGVGIDSREINQLFDPFFQVGTGVQRHFQGTGLGLAICEKLVNLMDGDVEVISELGMG 438

Query: 802 TLIEIIFPLYD 812
           ++  I  PLY 
Sbjct: 439 SIFAIRIPLYH 449


>gi|229589756|ref|YP_002871875.1| putative two-component system fusion protein [Pseudomonas
           fluorescens SBW25]
 gi|229361622|emb|CAY48502.1| putative two-component system, fusion protein [Pseudomonas
           fluorescens SBW25]
          Length = 1243

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 115/655 (17%), Positives = 213/655 (32%), Gaps = 48/655 (7%)

Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS--SLTEYYAHK 250
             A           L EI    +  +    ++ S       LR   ++   +L +     
Sbjct: 138 REATILVEQGIADGLKEIASRAADHQVRVSNLESAHRILDILRNSERIITANLAKMLVTG 197

Query: 251 DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY-----LSH 305
           D            +    + +  +         T  Q    +               L  
Sbjct: 198 DRAAGIAARDTCAALPPVVEQLREVMAAPQEVETLDQLTTAVAAACLAVEHLGEAPKLRG 257

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG----NLFYANPSFLLLTKYKSVDDIE 361
                  A   +        + +        ++          N + L     + V  +E
Sbjct: 258 GEALRHLAVLGDVAERLEAMLGELDEHVAHDANDIQAATGLLQNAAALSKRFAERVATLE 317

Query: 362 IAGGLSTLLDAPKLS---DNNAIKPVMLYRSDRTCIAASARLHTIQWNRE--NSLAMTFI 416
                  L  +P+++        +   L R   + +    +   +    +     A    
Sbjct: 318 AQTLSFRLSPSPEVASAVGAILDELSRLSRVLPSSVGLQTKATALTVYDQIAGYRAAFAR 377

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL----CSILEATSDGIAIINREG 472
             + +N       Q   E       + +   E     L      +L     G        
Sbjct: 378 FHQASNSLSGARDQVRNEARSAGLLVARFAGEARSEALVHNDRGMLATVVAGTVA----- 432

Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH---YLTEILSLDLRQTLEKIT 529
            IL  +        +     + +P                   +  +   D    + +  
Sbjct: 433 -ILLASAIA-----WSTSRFVAQPIVALASAMRRLAAGDLNAAIASVGRGDEIGIMTRAV 486

Query: 530 LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW-----KQEKN------KLSHAKKIA 578
               +    + +     +       +     ++E      +Q +       +L  A+  A
Sbjct: 487 RVFQENALRIRVLEAEAEAERQQVQASLERMVAERTDTLHQQTEVLEAQAVELIQARNQA 546

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
           E  +  KSDF+A VSHE+RTPLT I+   E +      P     +    +   R+   ++
Sbjct: 547 ETANQAKSDFVATVSHELRTPLTLILAPLEQLSAATLPPAD---WRVQIDRAQRNALRLM 603

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
           + VND+LD SK E+GK  L   P+ L++ V        + A  K   +  S    +  + 
Sbjct: 604 NRVNDILDFSKAEAGKFELCPAPIDLNKMVGVLAEDAAMVAEGKGCTLTCSIDPALGTVF 663

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
            D R  ++I LN++SNAI FTP+GG + ++ T    +   L V+D+G+G+   +L    +
Sbjct: 664 LDPRHFEKILLNLVSNAIKFTPAGGTVHLAVTALDGDRFELAVQDSGIGIAPDKLPLLFQ 723

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
            F QI NS      GTG+GL L K +V+   G+  + S P +G+   +  PL D 
Sbjct: 724 RFSQIDNSATRHYSGTGIGLALVKYLVELMGGEVGVNSEPGQGSCFFVRLPLGDE 778



 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 74/222 (33%), Gaps = 27/222 (12%)

Query: 606  FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK-------IESGKMNLH 658
             S+ + +   G +     ++ A  +         I+ +L  ++K       I + + +  
Sbjct: 1022 LSDFLSSDPKGKMLPGYLLKLAEVVTAE---QQGIIEELEQLTKGVDHIKAIVAAQQSYA 1078

Query: 659  F-----EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713
                  E VS+   + +A+ L       + + +    A ++P +  D   V  I +N++ 
Sbjct: 1079 VAVSVVETVSVPALIEDALRLSAGSLARQEVAVVKEIA-DLPLLSLDRHRVLLILVNLIG 1137

Query: 714  NAIHFTP----SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
            NA             I +  +      + + V D G G+    L +              
Sbjct: 1138 NARQAMDGVVDRNPCITLDASLVDGSVLRMSVADNGNGIAPEHLARIF-----SHGFTTR 1192

Query: 770  RGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFPL 810
            + +G G GL           G+  + S    +G    +  PL
Sbjct: 1193 K-DGHGFGLHSCALAAQEMGGRLTMHSDGAGQGATFTLDIPL 1233


>gi|153826164|ref|ZP_01978831.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae MZO-2]
 gi|149740105|gb|EDM54270.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae MZO-2]
          Length = 1146

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 89/382 (23%), Positives = 159/382 (41%), Gaps = 24/382 (6%)

Query: 441 RINKRKMEIEVMQLC---SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP- 496
           R +++  ++   QL     +L+A    I I + +  ++ TN A  K++    E    +P 
Sbjct: 481 RSSEQVAKLSTEQLRWLTELLDAIPSMIFISDEKDEVVLTNAAYRKIYHTCCEKGCVQPQ 540

Query: 497 --FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554
              +     +        + +    +         +             I   +     Y
Sbjct: 541 PECSFLALPDQHEAEFSIIIQAPKSNCSIGEHYFHVTRRA---------ISHPINQRKYY 591

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
               +DI+E K+ +  L  + + A +    ++ FLA VSHE+RTP+ A++G  E++ ++ 
Sbjct: 592 LTLFNDITELKETEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGLMEILASR- 650

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
              L +            S   +   VND+LD SKIE+ ++ L     +L + +   +  
Sbjct: 651 ---LKSSESQLLLTNAISSAERLKLHVNDILDFSKIEAQQLQLDIGLYNLADELGPLLRG 707

Query: 675 VQLYANEKRILIRTSFANN-IPRILADLRSVKQIALNILSNAIHFTPSGGQI-IISTTHT 732
            +  A  K I     ++ N +     D     QI  N+LSNAI FT  G  +  I     
Sbjct: 708 FEASAQLKEIEFDVIWSPNSLLLANFDALRFNQIVTNLLSNAIKFTDQGRVVFKIDVAPE 767

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
               + + V DTG GMT  ++E    PF Q  ++   R  GTGLG+ +   +++   GK 
Sbjct: 768 ---MLTIVVEDTGCGMTQMQIESLFVPFAQADSTITRRFGGTGLGMSIVANLIELMNGKI 824

Query: 793 YIFSTPAKGTLIEIIFPLYDTS 814
            + S   +GT I++  PL   +
Sbjct: 825 EVKSEFEQGTQIQVNLPLVTQT 846


>gi|170736607|ref|YP_001777867.1| Hpt sensor hybrid histidine kinase [Burkholderia cenocepacia MC0-3]
 gi|254249296|ref|ZP_04942616.1| Signal transduction histidine kinase [Burkholderia cenocepacia
           PC184]
 gi|124875797|gb|EAY65787.1| Signal transduction histidine kinase [Burkholderia cenocepacia
           PC184]
 gi|169818795|gb|ACA93377.1| Hpt sensor hybrid histidine kinase [Burkholderia cenocepacia MC0-3]
          Length = 1011

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 112/701 (15%), Positives = 232/701 (33%), Gaps = 47/701 (6%)

Query: 124 ILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFR--GF 181
            +     +    ++  +  W             L     +   P+ + +  F      G 
Sbjct: 82  EIDAKQASVRRSVINAELLWNSHPRHSHSAAEALARDGHVVLSPLRNVSDIFVAVTPDGL 141

Query: 182 GIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS 241
             V  +        L   +            G++          +   PPP +   + + 
Sbjct: 142 AGVESDEYVQLMERLTISVAAAERQSGMPLSGYAYSPDRNVLAIT---PPPSMPYHDLLE 198

Query: 242 SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301
            +                   +    +   +                   +    + +F+
Sbjct: 199 RIGVADTRTLIDRVAFNIADWSDPAVARYWRSTRRIAWEPPAIDPLTGKKVFRLVEPAFD 258

Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCP---IPFFVYSHGNLFYANPSFLLLTKYKSVD 358
              H      +   D   N+  + + + P   +   V   G +                 
Sbjct: 259 GPRHFM----TFVSDLDVNVLDDRLKQAPEDAVVMLVDQAGRVLL---EEDRTRASIDGA 311

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
            +                 + +    +   SDR      A ++   W    ++A+     
Sbjct: 312 ALMRHALAENAWRRGLDRFDESYLHGVFTISDRIADTGFAIVYAYSWR-TIAIAIWPTIV 370

Query: 419 EKANQFPENMPQNGIEPEDVDTRI-----NKRKMEIEVMQL-CSILEATSDGIAIINRE- 471
            +       +          D ++      + +   E  ++  +I+  +  GI +++ + 
Sbjct: 371 REFGVAALILAVLWALVIAFDLKVFAPVFRRSRRVFETDEMSRAIIATSPFGIVLVSLDT 430

Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
             +L  NR + +L+                      ++  Y        ++  +E     
Sbjct: 431 DTVLLRNR-MHELYESEAGA----------PPLHERMLARYRQGADGAPVQLDVEFPVTL 479

Query: 532 STKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
                + L +  +  +            DI+     +  L       +  +  KS FLA 
Sbjct: 480 DDGRARDLLVNFVRVRYRGKDTLLCGFSDITTRADTERAL-------DSANRAKSTFLAT 532

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           +SHEIRTPL A++G  E++           R     + +  +  ++LD++N++LD++KIE
Sbjct: 533 ISHEIRTPLNAMLGNLELL----DKAPDRNREKSRLHAVTSAARMLLDMLNNVLDMTKIE 588

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALN 710
           + +M L      +DE   + + L +  A  K + +R           + D   V+QI +N
Sbjct: 589 ADRMTLEATSFRIDELARDIVELFEPIARAKGVALRVDVDAQAARPYVGDPLRVRQIVVN 648

Query: 711 ILSNAIHFTPSGGQ-IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
           ++SNAI FT  G   + ++        V++RV D+G+GMT  +LE   +PF Q   S   
Sbjct: 649 LVSNAIKFTDRGTVALSVTAPVADGTPVMIRVSDSGIGMTAAQLEHVFEPFAQADESIAR 708

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           R  GTG+GLPL+  + ++  G+  + S P  G+   +  PL
Sbjct: 709 RFGGTGIGLPLSNKLAESMGGRIAVDSVPNVGSTFVVSLPL 749


>gi|116624414|ref|YP_826570.1| histidine kinase [Candidatus Solibacter usitatus Ellin6076]
 gi|116227576|gb|ABJ86285.1| histidine kinase [Candidatus Solibacter usitatus Ellin6076]
          Length = 1349

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 71/245 (28%), Positives = 123/245 (50%), Gaps = 8/245 (3%)

Query: 570  KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
            +L+ AK+ AE  S HK++FLA +SHEIRTP+  +IG + ++ +            +YA  
Sbjct: 769  ELNRAKEQAEAASRHKTEFLANMSHEIRTPMNGVIGMTGLLLDTELTT----EQRDYAGT 824

Query: 630  IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
            + RSG  +L ++ND+LD SK+E+GK+ +      L   + E   ++      +++ +   
Sbjct: 825  VRRSGESLLTLINDILDFSKVEAGKLAIEASAFDLRSTIEEVDEMLAPKIENRKLDLVLQ 884

Query: 690  FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRVR--DTG 745
            +    PR  + D   ++Q+  N++ NAI FT  G   I +          ++RV   DTG
Sbjct: 885  YPVGAPRHFVGDAGRIRQVVTNLVGNAIKFTGEGSIVIEVVCESQDEARAVMRVAIHDTG 944

Query: 746  VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
             G+ + ++    + F Q+  S   +  GTGLGL ++K +V    G   + S   +G+   
Sbjct: 945  PGIPSEKIGSLFEKFSQLDGSTTRKYGGTGLGLAISKQLVSLMGGSMAVSSRLGEGSTFS 1004

Query: 806  IIFPL 810
               PL
Sbjct: 1005 FTLPL 1009


>gi|325982917|ref|YP_004295319.1| PAS/PAC sensor signal transduction histidine kinase [Nitrosomonas
           sp. AL212]
 gi|325532436|gb|ADZ27157.1| PAS/PAC sensor signal transduction histidine kinase [Nitrosomonas
           sp. AL212]
          Length = 435

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 78/397 (19%), Positives = 164/397 (41%), Gaps = 33/397 (8%)

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRK-MEIEVMQLCSILEATSDGIAIINREGI 473
             P                    V      ++ + I + ++ S+  A  DGI I++    
Sbjct: 61  HSPASIPAGSGAWDEVYAHLARYVRQHSQSQEMLSIALKRMQSVTSAMPDGIVILDMNDR 120

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
           I   N    +  G  +   + +  T  + Q        ++  + +      L  I   + 
Sbjct: 121 IEWCNPVAEQHLGISLALDVGQQITYLVRQ------IPFVEYLTARQYSSPL--ILKQTR 172

Query: 534 KEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
            +  ++SL+++       +   +   DI+ +++ +                + DF+A VS
Sbjct: 173 LQGLIISLQLVPY---GYNQKLIISRDITRFEKIET--------------MRRDFIANVS 215

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HE+RTPLT I GF E +       + +         +      +  ++ DLL +S++E+ 
Sbjct: 216 HELRTPLTVIGGFLETL--SADDNVNSSFNKRALALMTEQTTRMQGLIEDLLILSRLENE 273

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLY-ANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712
           +  +  + V++     + +   +   A   +I +  +  + +   L     ++    N++
Sbjct: 274 QNKVSEKIVNVVNLAQDLLQDAESLSAGRHQIKLTVASQDQL---LGSEEELRSAFGNLV 330

Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           SNAI +TP GG+IIIS     ++ +   V+D+G+G+    + +  + F +I +S+     
Sbjct: 331 SNAIRYTPYGGEIIISWEKRHDQGLFF-VQDSGIGIEPEHIPRLTERFYRIDSSRSRETG 389

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GTGLGL + K +++ +  +  + S   KG+   I FP
Sbjct: 390 GTGLGLAIVKHVLNRHEARLEVISKVGKGSRFNIWFP 426


>gi|320103390|ref|YP_004178981.1| integral membrane sensor signal transduction histidine kinase
           [Isosphaera pallida ATCC 43644]
 gi|319750672|gb|ADV62432.1| integral membrane sensor signal transduction histidine kinase
           [Isosphaera pallida ATCC 43644]
          Length = 622

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 79/260 (30%), Positives = 139/260 (53%), Gaps = 11/260 (4%)

Query: 558 MHDI-SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
           + D+ ++  ++ ++L+ A     + +  KSDFLA +SHE+RTPL +I+GFSEV+      
Sbjct: 296 LRDVNADLDRKVDELAQANLALYEMNRLKSDFLATMSHELRTPLNSILGFSEVLAGSDQ- 354

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
              + ++  +AN I  SG ++L ++ND+LD++KIESGKM +  E  S  +      ++++
Sbjct: 355 --LSEKHRRFANNIMTSGRMLLTMINDILDLAKIESGKMEVRIENCSARDLCESLAAVMR 412

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
                K I ++    + +P I  D   VK+I  N+LSNA+ FTP GG++ +         
Sbjct: 413 DAFEAKNIDLKCVIDDQLPLIRQDPGKVKRIVSNLLSNAVKFTPEGGRVELRV-FAEGRF 471

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQI------PNSQQIRGEGTGLGLPLAKAMVDANMG 790
           ++++V DTG+G+   + E   + F Q+              +GTGLGL + + +     G
Sbjct: 472 LVIQVEDTGIGIAPEDQEAIFEKFRQLAQPQRDDAVLTREHQGTGLGLSIVRELCRLLEG 531

Query: 791 KFYIFSTPAKGTLIEIIFPL 810
              + S P  G++  +  PL
Sbjct: 532 DIKLVSQPGLGSIFTVRLPL 551


>gi|150018828|ref|YP_001311082.1| histidine kinase [Clostridium beijerinckii NCIMB 8052]
 gi|149905293|gb|ABR36126.1| histidine kinase [Clostridium beijerinckii NCIMB 8052]
          Length = 502

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 74/249 (29%), Positives = 126/249 (50%), Gaps = 10/249 (4%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +    K +L   K+ AE  +  KS+FLA +SHEIRTPL  IIG +++  +          
Sbjct: 5   DRALTKEELFKLKEAAEAANRAKSEFLANMSHEIRTPLNGIIGMTDLTLSTNL----TEE 60

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             E  + +    + +L ++N++LD+SKIE+ K+ +     ++   +   I      ANEK
Sbjct: 61  QKENLSIVKSCAHSLLSLINNILDLSKIEAEKVLIENVNFNIQVLIKNVIYTNLPKANEK 120

Query: 683 RILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTH----TSNEEV 737
            I +  +   NIP++L  D+  ++Q+  N++SNA+ FT SG  +II         +  E+
Sbjct: 121 YIQLHYTIDENIPQVLVGDVYRLEQVLNNLVSNAVKFTESGF-VIIKVRKINKSKNEYEI 179

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
              V D G+G++  E++   K F Q+  S   +  GTGLGL ++K +V+   G   + S 
Sbjct: 180 QFVVEDVGIGISRDEMQHLFKSFSQVDGSITRKYGGTGLGLSISKKLVELMGGNIEVESE 239

Query: 798 PAKGTLIEI 806
              G+    
Sbjct: 240 KGVGSKFYF 248


>gi|237738106|ref|ZP_04568587.1| two-component sensor histidine kinase [Fusobacterium mortiferum
           ATCC 9817]
 gi|229419986|gb|EEO35033.1| two-component sensor histidine kinase [Fusobacterium mortiferum
           ATCC 9817]
          Length = 613

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 91/371 (24%), Positives = 175/371 (47%), Gaps = 26/371 (7%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           +++  E  +  +I+E+ SDGI + + E  I+  NRA  +L     +++L++PF   L   
Sbjct: 257 KRLMTEKRKAEAIVESISDGIIVTDMENNIILVNRAAEELLNIEEKELLKQPF---LHAI 313

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS-----LRIIIKKLPFSSCYSLTMH 559
               +   + EIL+ D  ++  K    S  + +L++     +  II K        + + 
Sbjct: 314 NNKKIYDSVQEILNNDEIKSTMKQLEISLNKGELITYCKVFINSIISKNGERLGIVILLQ 373

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           DI++ K              +    K +F++ VSHE RTPLT+I    E++ ++  G L 
Sbjct: 374 DITKAK--------------ELDQMKDNFVSTVSHEFRTPLTSIGMAVELLSDKSIGEL- 418

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
           N    E    I    + +  ++ DLLD+S++ES K  ++F+   + + +  AI  ++   
Sbjct: 419 NDIQKELVTAIKLDNDRLKLLIKDLLDLSRLESRKTPMNFQECDIKKIIDFAIKPLRNLC 478

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG--QIIISTTHTSNEEV 737
             K + +     +N   ++AD   +  +  N + NAI +   G    I++      +E +
Sbjct: 479 ENKNVTLELGNIDNSTPVIADFNKISVVLTNFIGNAIKYGKEGEPNHILVE-AFKKDENL 537

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
           ++ V+D G G+   +LEK    + Q+  S   + EGTGLGL ++K ++  + G+ ++ S 
Sbjct: 538 VVAVKDEGRGIPQDQLEKIFNKYIQVKVSNDGKIEGTGLGLSISKEIIKNHNGEIWVDSK 597

Query: 798 PAKGTLIEIIF 808
             KG+      
Sbjct: 598 LGKGSTFYFSL 608


>gi|304391854|ref|ZP_07373796.1| two-component sensor histidine kinase protein [Ahrensia sp. R2A130]
 gi|303296083|gb|EFL90441.1| two-component sensor histidine kinase protein [Ahrensia sp. R2A130]
          Length = 526

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 96/228 (42%), Positives = 145/228 (63%)

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
           +  KS FLA +SHE+RTPL AI+GFSE++ N+  GP+ N  Y EY   I RSG  +L ++
Sbjct: 267 NLAKSRFLATMSHELRTPLNAILGFSEIMSNEVMGPIDNDNYKEYLADIHRSGAHLLKLI 326

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701
           N++LD+S+IE+G+  L+ EPV L  AV E+  +V+L AN+K++ +      ++P + AD 
Sbjct: 327 NEILDLSRIEAGRYELNEEPVKLGHAVEESQQMVKLKANQKKVQLVIQLQPDMPAVWADA 386

Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761
           R+V+QI LN+LSNA+ FTPSGG I +    TS     + +RDTG G+   E+   +  FG
Sbjct: 387 RAVRQIVLNLLSNALKFTPSGGTIWLKCGWTSGGGQYITIRDTGPGIPEEEIPIVLSSFG 446

Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           Q   + +   +GTGLGLP+ +A++  + G+F + S    GT +   FP
Sbjct: 447 QGSIAIKSAEQGTGLGLPIVQALMQMHDGRFDLRSKLRAGTEVTATFP 494


>gi|153803527|ref|ZP_01958113.1| histidine protein kinase PhoR [Vibrio cholerae MZO-3]
 gi|153827120|ref|ZP_01979787.1| phosphate regulon sensor kinase PhoR [Vibrio cholerae MZO-2]
 gi|229523455|ref|ZP_04412862.1| phosphate regulon sensor protein phoR [Vibrio cholerae TM 11079-80]
 gi|254285443|ref|ZP_04960407.1| histidine protein kinase PhoR [Vibrio cholerae AM-19226]
 gi|124120937|gb|EAY39680.1| histidine protein kinase PhoR [Vibrio cholerae MZO-3]
 gi|149738986|gb|EDM53298.1| phosphate regulon sensor kinase PhoR [Vibrio cholerae MZO-2]
 gi|150424305|gb|EDN16242.1| histidine protein kinase PhoR [Vibrio cholerae AM-19226]
 gi|229339818|gb|EEO04833.1| phosphate regulon sensor protein phoR [Vibrio cholerae TM 11079-80]
 gi|327483514|gb|AEA77921.1| Phosphate regulon sensor protein PhoR (SphS) [Vibrio cholerae
           LMA3894-4]
          Length = 433

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 75/402 (18%), Positives = 153/402 (38%), Gaps = 30/402 (7%)

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDT-RINKRKMEIEVMQLCSILEATSDGIAI 467
           ++           +                   R  ++++   + +  +  E+  D + +
Sbjct: 54  SAWLWDEKRLTPPSGTGNWESLFNGIYRLQQRHRKKRKELTNLIRRFRNGAESLPDAVVV 113

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
              EG I+  NR    L G+   D   +P +  L          ++  +   D    LE 
Sbjct: 114 FRSEGNIVWCNRLAQHLLGFRWPDDAGQPISNLLRTP------DFIKYLKKDDFTDPLEM 167

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
                +       L + I        + + + D+++ KQ +                + +
Sbjct: 168 ----RSPLNSDRMLELRIVPYTEGE-HLMVVRDVTQLKQLEG--------------MRRN 208

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           F A VSHE+RTP+T + G+ E+   +    L  P + +    +    N +  +VN LL +
Sbjct: 209 FFANVSHELRTPMTVLQGYLEM--TEDPDVLAGPMWSKAHGVMTEQLNRMNSLVNQLLTL 266

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707
           SKIE+  M    + V +   +          + E +  +      ++ ++LAD   ++  
Sbjct: 267 SKIEASPMVELDQVVDVPAMLEVLEKEAVSLSGEAQHKLHFEVDKSL-KVLADEDQLRSA 325

Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
             N++ NA+ +TP G QI +   + + +   L V D G G+    L +  + F ++  ++
Sbjct: 326 ISNLVYNAVKYTPPGAQIDVRW-YRTGKGACLEVEDKGEGIEPQHLHRLTERFYRVDKAR 384

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
                G+GLGL + K  +  +     I+S    G+    + P
Sbjct: 385 SRDTGGSGLGLAIVKHALAHHDTHLDIYSKVGVGSKFSFVLP 426


>gi|77359054|ref|YP_338629.1| sensor protein [Pseudoalteromonas haloplanktis TAC125]
 gi|76873965|emb|CAI85186.1| putative sensor protein [Pseudoalteromonas haloplanktis TAC125]
          Length = 1120

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 67/249 (26%), Positives = 125/249 (50%), Gaps = 9/249 (3%)

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + + +L  AK+ AE+  + KS+FLA +SHEIRTP+  ++G   ++KN +     + + 
Sbjct: 586 RIETEQQLVTAKETAEQAVAAKSEFLASMSHEIRTPMNGVLGMLNIVKNTKL----DQQQ 641

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
           + +      S   +L+I+ND+LD SKIE+GK+++     +L   + E +    L A +  
Sbjct: 642 MHHIELAQSSAQSLLNIINDILDFSKIEAGKLDIEKIQFNLPRLLGEVVESFALKAEQNN 701

Query: 684 ILIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH---TSNEEVIL 739
            ++        +  I++D   ++QI  N++SNA+ FT  G +I+++      T    ++ 
Sbjct: 702 TILILDATLITVSEIVSDPNRLRQILSNLISNAVKFTFDG-KIVVTAKIDETTDGTSLVC 760

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            + DTG+G+   +       F Q   S   +  GTGLGL + K + +   G+  + S   
Sbjct: 761 SIIDTGIGIKPEKHSTLFDSFTQADTSTTRQYGGTGLGLAIVKQLCELMGGEVSVTSMLN 820

Query: 800 KGTLIEIIF 808
           +G+      
Sbjct: 821 EGSTFSFSI 829


>gi|319651161|ref|ZP_08005293.1| hypothetical protein HMPREF1013_01905 [Bacillus sp. 2_A_57_CT2]
 gi|317397143|gb|EFV77849.1| hypothetical protein HMPREF1013_01905 [Bacillus sp. 2_A_57_CT2]
          Length = 468

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 75/250 (30%), Positives = 129/250 (51%), Gaps = 4/250 (1%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E  Q  N  +H     +KE   K DFLA VSHE+RTP++ + G+SE + ++         
Sbjct: 221 EIGQLANAFNHMSSSIQKEDEKKKDFLANVSHELRTPISYVKGYSEALISEM--AESEED 278

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             +Y   I R    +  +V DLLD+SK+ES +  L   P+ L + + +AI   +    EK
Sbjct: 279 RQKYLQLILRESKRMERLVGDLLDLSKLESDEYKLEKMPLPLGQLIEDAIEKYKPILREK 338

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
            + ++      +  I  D   ++QI  NI+ N+I +T  G +I I  +    ++ ++ + 
Sbjct: 339 NLDLQYRLDPEVI-INGDEGRIEQIIQNIMDNSIRYTAEG-RISIRLSQEKEDKCVIEIE 396

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG+G++   L K  + F ++   +     GTGLGL +A+ +V  + G+  + S   KGT
Sbjct: 397 DTGIGISEEHLSKIKQRFYRVNKGRTRSDGGTGLGLAIAEKLVKLHQGELTVLSELNKGT 456

Query: 803 LIEIIFPLYD 812
            + I+ PL++
Sbjct: 457 TVRIVLPLFE 466


>gi|257059466|ref|YP_003137354.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC
           8802]
 gi|256589632|gb|ACV00519.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC
           8802]
          Length = 442

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 85/257 (33%), Positives = 147/257 (57%), Gaps = 4/257 (1%)

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
            ++T+H I + ++    L    +   K S +KSD+L+ ++HE+RTPLT I+GF+++++ +
Sbjct: 184 IAITIHQI-QLEERLKDLESENQRLHKTSQNKSDYLSHINHELRTPLTGILGFAKMLREE 242

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
            +GPL N +  +Y N I  SG  +L +VND LD+SKIE+ +  +  E +++++    AIS
Sbjct: 243 LYGPL-NEKQKQYINGIAVSGEHLLALVNDFLDLSKIEAEREEIFLETIAVEDICLSAIS 301

Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
           +V   A E+ I +      N+     D R +KQI LN+LSNAI FT  G  + ++   + 
Sbjct: 302 IVDSKAKEQGINLIIEIGENVDFCTVDQRRIKQILLNLLSNAIKFTEKGS-VTLAVK-SD 359

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
            E +   + DTG+G+   + +K  +PF QI +    + +GTGLGL L++ +   + G   
Sbjct: 360 REMLTFCIIDTGIGIKQDDQKKLFEPFQQIQSHLSRKHKGTGLGLTLSRKLAQLHGGDLT 419

Query: 794 IFSTPAKGTLIEIIFPL 810
           + S   KG+   +  P+
Sbjct: 420 LTSEMGKGSCFTLHIPI 436


>gi|218246423|ref|YP_002371794.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC
           8801]
 gi|218166901|gb|ACK65638.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC
           8801]
          Length = 442

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 85/257 (33%), Positives = 147/257 (57%), Gaps = 4/257 (1%)

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
            ++T+H I + ++    L    +   K S +KSD+L+ ++HE+RTPLT I+GF+++++ +
Sbjct: 184 IAITIHQI-QLEERLKDLESENQRLHKTSQNKSDYLSHINHELRTPLTGILGFAKMLREE 242

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
            +GPL N +  +Y N I  SG  +L +VND LD+SKIE+ +  +  E +++++    AIS
Sbjct: 243 LYGPL-NEKQKQYINGIAVSGEHLLALVNDFLDLSKIEAEREEIFLETIAVEDICLSAIS 301

Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
           +V   A E+ I +      N+     D R +KQI LN+LSNAI FT  G  + ++   + 
Sbjct: 302 IVDSKAKEQGINLIIEIGENVDFCTVDQRRIKQILLNLLSNAIKFTEKGS-VTLAVK-SD 359

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
            E +   + DTG+G+   + +K  +PF QI +    + +GTGLGL L++ +   + G   
Sbjct: 360 REMLTFCIIDTGIGIKQDDQKKLFEPFQQIQSHLSRKHKGTGLGLTLSRKLAQLHGGDLT 419

Query: 794 IFSTPAKGTLIEIIFPL 810
           + S   KG+   +  P+
Sbjct: 420 LTSEMGKGSCFTLHIPI 436


>gi|310639938|ref|YP_003944696.1| sensor protein [Paenibacillus polymyxa SC2]
 gi|309244888|gb|ADO54455.1| Sensor protein [Paenibacillus polymyxa SC2]
          Length = 1046

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 71/244 (29%), Positives = 127/244 (52%), Gaps = 3/244 (1%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           ++ +  +        K +FLA  SHE+RTPL  II  ++ + + R+G   N         
Sbjct: 430 EVENLSRRLLTLDGLKDEFLANTSHELRTPLHGIINIAQSMLD-RYGAQFNEPQKHNLAL 488

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I   G  +  ++ND+LD S +++G++ L+  PV++  AV+  + ++     +K++     
Sbjct: 489 IVNVGRRLSYLINDILDFSNLKNGRLALNRRPVNVQTAVNSVLEVLGHNVGKKKLQFVKE 548

Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749
           + N++P++ AD   + QI  N+L NA+ FT  G +I+IS     N E+ + V+DTG G+ 
Sbjct: 549 WPNSLPKVDADEDRLNQILYNLLGNAMKFTEEG-EIVISAKVR-NREMEISVKDTGPGIA 606

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
              L    +PF +  N++     GTGLGL + + +V+ + G   + S   KG+      P
Sbjct: 607 PDHLSHIFEPFNRGANAEDKGYSGTGLGLGITRRLVELHGGYIRVESRLGKGSTFYFTLP 666

Query: 810 LYDT 813
           L +T
Sbjct: 667 LAET 670



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 58/396 (14%), Positives = 120/396 (30%), Gaps = 92/396 (23%)

Query: 458  LEATSDGIAIINREGIILSTN-RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
            +      +  ++ +G     N R + +L       +        +  +        L   
Sbjct: 708  VRNVPYRVLAVDDDG----VNLRVLEELLYATGCSV--------VAVDHAEEALQLLNGR 755

Query: 517  LSLD-------LRQTLEKITLGSTKEE-------------KLLSLRIIIKKLPFSSCYSL 556
               D       + +          +E              + L   I    +  ++ +  
Sbjct: 756  ARFDLVITDWMMPEMSGIELCRRIREGYSLSELPVLLLTARDLPGDIHAGFMAGANDFLR 815

Query: 557  TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL-ARV-SHEIRTPLTAIIGFSEVIKNQR 614
               D  E K     L + +  AE+    +  FL A++  H +   L  I+          
Sbjct: 816  KPVDAEELKARVRTLLNMRNSAEEAVRSEMAFLQAQIKPHFLYNALNVIVSTV------- 868

Query: 615  FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP--VSLD---EAVS 669
               +   +  E                  L+++S+   G  +       V L    E V 
Sbjct: 869  --AVDPDKAAEL-----------------LMELSQYLRGSFDFQNRENTVPLCKELELVE 909

Query: 670  EAISLVQLYANEK-RILIRT--SFANNIPRILADLRSVKQIALNILSNAIHFT----PSG 722
              ++L +    E+ ++ I    +  + IP +             I+ NAI        +G
Sbjct: 910  SYVALEKARFEERLQVTIEVGRNIRSLIPPLSIQP---------IVENAIRHGVMQRATG 960

Query: 723  GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
            G + +        + ++ V D GVG+    L++ +        S++      GL   + +
Sbjct: 961  GTVRVIVQ-EDGADFVVSVTDDGVGIPPERLQQLL--------SEEHVSSSVGL-RNIHR 1010

Query: 783  AMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
             ++        I S P +GT +    P    SHP +
Sbjct: 1011 RLIHMYGEGLRIESNPMQGTTVSFRVPETILSHPTE 1046


>gi|91212153|ref|YP_542139.1| hybrid sensory histidine kinase BarA [Escherichia coli UTI89]
 gi|117625014|ref|YP_854002.1| hybrid sensory histidine kinase BarA [Escherichia coli APEC O1]
 gi|218559774|ref|YP_002392687.1| hybrid sensory histidine kinase BarA [Escherichia coli S88]
 gi|218690909|ref|YP_002399121.1| hybrid sensory histidine kinase BarA [Escherichia coli ED1a]
 gi|237706586|ref|ZP_04537067.1| sensor-regulator [Escherichia sp. 3_2_53FAA]
 gi|331658897|ref|ZP_08359839.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           TA206]
 gi|91073727|gb|ABE08608.1| sensor-regulator, activates OmpR by phophorylation [Escherichia
           coli UTI89]
 gi|115514138|gb|ABJ02213.1| BarA, sensory histidine kinase; two-component regulator with UvrY
           [Escherichia coli APEC O1]
 gi|218366543|emb|CAR04296.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli S88]
 gi|218428473|emb|CAR09399.2| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Escherichia coli ED1a]
 gi|222034477|emb|CAP77219.1| Signal transduction histidine-protein kinase barA [Escherichia coli
           LF82]
 gi|226899626|gb|EEH85885.1| sensor-regulator [Escherichia sp. 3_2_53FAA]
 gi|294490869|gb|ADE89625.1| sensor histidine kinase/response regulator BarA [Escherichia coli
           IHE3034]
 gi|307625645|gb|ADN69949.1| hybrid sensory histidine kinase BarA [Escherichia coli UM146]
 gi|312947313|gb|ADR28140.1| hybrid sensory histidine kinase BarA [Escherichia coli O83:H1 str.
           NRG 857C]
 gi|315289301|gb|EFU48696.1| response regulator receiver domain protein [Escherichia coli MS
           110-3]
 gi|315298721|gb|EFU57975.1| response regulator receiver domain protein [Escherichia coli MS
           16-3]
 gi|320194925|gb|EFW69554.1| hybrid sensory histidine kinase BarA [Escherichia coli WV_060327]
 gi|323950997|gb|EGB46873.1| hsp90-like protein [Escherichia coli H252]
 gi|323957202|gb|EGB52926.1| hsp90-like protein [Escherichia coli H263]
 gi|331053479|gb|EGI25508.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           TA206]
          Length = 918

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 85/333 (25%), Positives = 153/333 (45%), Gaps = 17/333 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +FG+ +   +  P    +               L   +   +             +++ +
Sbjct: 193 IFGWRLMRDVTGPIRNMVNTVDR-----IRRGQLDSRVEGFMLGELDMLKNGINSMAMSL 247

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 248 AAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTP 307

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+ +       P       ++ N I+RS N +L I+ND+LD SK+E+GK+ L  
Sbjct: 308 LNGVIGFTRLTLKTELTPT----QRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILES 363

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P  L   + E ++L+   +++K + +  +  +++P  ++ D   ++QI  N++ NAI F
Sbjct: 364 IPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKF 423

Query: 719 TPSGGQ-IIISTTHTSNEEVILRV--RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T +G   I++     SN +V + V  RDTG+G+   +  +  + F Q   S   R  GTG
Sbjct: 424 TENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTG 483

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           LGL + + +V+   G     S P +G+      
Sbjct: 484 LGLVITQKLVNEMGGDISFHSLPNRGSTFWFHI 516


>gi|294012871|ref|YP_003546331.1| two-component system phosphate regulon sensor histidine kinase PhoR
           [Sphingobium japonicum UT26S]
 gi|292676201|dbj|BAI97719.1| two-component system phosphate regulon sensor histidine kinase PhoR
           [Sphingobium japonicum UT26S]
          Length = 418

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 79/355 (22%), Positives = 145/355 (40%), Gaps = 24/355 (6%)

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
             ++EA +D + +I   G I++ NRA  +L G                +           
Sbjct: 75  RDLMEAMADPLMLI-ERGRIVAANRAAQRLLGA--------HIEGEDARIAIRHPAAAER 125

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA 574
                 L + +    +G    ++   +RI            + + D              
Sbjct: 126 LASQAPLAEPVTIELVGLGARDQRWQMRIAPVGEDGHVRRLVHLAD-------------- 171

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
              A      + DF+A  SHE+RTPL  I+GF E + +   G   +     +   +D   
Sbjct: 172 HSGAHAAEKMRVDFVANASHELRTPLAGILGFIETLADPELGK-DDETRQRFLKIMDGEA 230

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
             +  +++DL+ +S+IE+ K  L    V L   V+E + + +   +E+   +    A  +
Sbjct: 231 RRMQRLIDDLISLSRIEAEKHRLPESAVDLSGLVAEVVGVFRASHSERGRDVEMEIAPGL 290

Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELE 754
           P    D   + Q+  N++ N++ +  +G  I +S +   N  + L V D G G+    L 
Sbjct: 291 PEAQGDRAQLSQLLHNLIGNSVKYGRAGTPIRVSLSDGPNGLLRLTVADEGEGIGPDHLP 350

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +  + F ++ + +     GTGLGL + K +V+ + G+  I S   KGT I I+ P
Sbjct: 351 RLTERFYRVDSGRSRAVGGTGLGLAIVKHIVERHRGRLDIASVLGKGTTISILLP 405


>gi|256422650|ref|YP_003123303.1| MCP methyltransferase, CheR-type with PAS/PAC sensor [Chitinophaga
            pinensis DSM 2588]
 gi|256037558|gb|ACU61102.1| MCP methyltransferase, CheR-type with PAS/PAC sensor [Chitinophaga
            pinensis DSM 2588]
          Length = 1303

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 107/773 (13%), Positives = 229/773 (29%), Gaps = 71/773 (9%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNTWYGK 146
            +D +  +   +    ++      +  G  L ++ +      +    + +LL  +  +   
Sbjct: 546  LDTNIRVVSANASFYRSFKMERKETEGKLLYELGNKQWNTSDLRSLMENLLTSRTPFANY 605

Query: 147  TTLWPIEGTNLYVPIDLAALPIYSRNRE----FSGFRGFGIVHVNRVDNDPRALGKRL-- 200
               +   G      I +    I S++ +             V   R     +    R   
Sbjct: 606  ELTYKSTGNGTRT-IMMNGQLITSQDLKEELILIAIEDITEVREARERIARKQEVVRNNE 664

Query: 201  DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH----LRMKNKVSSLTEYYAHKDDVLKT 256
            ++    L   + G         ++               M     S  +     D     
Sbjct: 665  ERLRLALEGTRTGTWDFNPLSKELVLSDRSRELFGITALMPLDFDSFLKVIHPADAAAAQ 724

Query: 257  EKYPLLTSEESSLPEQEDFHT--INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
             +     + + +     DF                    ++   +   L      + S  
Sbjct: 725  GRIYAALAGKDNGQINVDFRINISEEKVNWISCKAQVFFDDHNTAVRVLGVVTDVTESKQ 784

Query: 315  FDEGENLTPETVDKCPIPFFVYSHGN--------LFYANPSFLLLTKYKSVDDIEIAGGL 366
            F+       E  D+          G+        + + N  F       S          
Sbjct: 785  FE---KHLQEVNDRLNFALQTGRLGSWELDLTSGVIHGNEQFKSNYGLASQAGF----TY 837

Query: 367  STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
              LL      D    +  + +      +        I+W   +   +         +   
Sbjct: 838  EKLLAMILPEDVRRAEEALQHALSNRMLYVEEY--RIRWTDSSVHWIAATGQGVYEEDGS 895

Query: 427  NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
                 G+  +  + ++ +  ++        I +     I I  ++G     N+A  K  G
Sbjct: 896  VKKMIGVTMDITERKLAQLHLQQSEAYFRMIADTAPAMIWIAEKDGSFSFFNKAWQKYTG 955

Query: 487  YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
              ++      +   +           +    S   R+           +     L     
Sbjct: 956  RSLDQNKDNGWYDIMHPEDTDKWK--INFSRSSRDRKNFYSEFRLKRHDGTYHWLACSGI 1013

Query: 547  KLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKE-----------SSHKSDFLAR 591
                S      +     DI + K  ++ L    +                +     F+  
Sbjct: 1014 PRFNSQDEFVGFIGACTDIDDQKMVEDALERKVRERTIALEDANANLSKRNHELEQFVFI 1073

Query: 592  VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
             SH+++ PL  I  F++++++ + G        +Y   + +S   + D++ DL+  S++E
Sbjct: 1074 TSHDLQEPLRKIRLFADMLESVKPGTPTKIDTAQYLRKVKQSAIRMSDLIRDLIAYSRLE 1133

Query: 652  SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
             G+    F PV L++ V   I   +L   +K   I  +    +P I A    + Q+  N+
Sbjct: 1134 LGEN--AFLPVDLNQIVVNVIEDFELLIRDKNAKIDIT---ELPVIDAVPLQMNQLFYNL 1188

Query: 712  LSNAIHFTPSGG--QIIISTTHTSN-------------EEVILRVRDTGVGMTNYELEKA 756
            + NA+ F+   G  +I I+    S+                 + V D G+G      +K 
Sbjct: 1189 IGNALKFSIPNGECRITITANKISDSELNDLPLLPKGPGYYRIIVADNGIGFNQTYADKL 1248

Query: 757  MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
               F ++    + + EGTG+GL L + ++D + G    F    +G    II P
Sbjct: 1249 FVIFQRLNQ--KEKFEGTGIGLALCRKIMDIHNGDIQAFGVEQQGAAFHIIIP 1299



 Score = 50.8 bits (120), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 21/213 (9%), Positives = 65/213 (30%), Gaps = 5/213 (2%)

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
            + V  Y+ +   +A +      +    N    +     + +Q    +  + +   + D 
Sbjct: 459 EREVQRYKEELRAVAEAYEATNEELQSANEELKSLNEELEVSQEELQVINDELSTRNNDL 518

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
                ++    +   SI+    + + I++    ++S N +  + F    ++   K     
Sbjct: 519 LERNNQLNNARLYAESIVNTVHESLLILDTNIRVVSANASFYRSFKMERKETEGKLLYEL 578

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI----IIKKLPFSSCYSL 556
             +   +     L E L               +      ++ +    I  +        +
Sbjct: 579 GNKQWNTSDLRSLMENLLTSRTPFANYELTYKSTGNGTRTIMMNGQLITSQDLKEELILI 638

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
            + DI+E ++   +    K+   + +  +    
Sbjct: 639 AIEDITEVREA-RERIARKQEVVRNNEERLRLA 670


>gi|254281985|ref|ZP_04956953.1| phosphate regulon sensor kinase PhoR [gamma proteobacterium
           NOR51-B]
 gi|219678188|gb|EED34537.1| phosphate regulon sensor kinase PhoR [gamma proteobacterium
           NOR51-B]
          Length = 436

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 74/420 (17%), Positives = 152/420 (36%), Gaps = 33/420 (7%)

Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR--KME 448
                 S  L    W           P     +              +  R  +   ++ 
Sbjct: 34  GFAATVSGALLVWVWQVRKINRWLDSPETTPPESFGIWGVILDNIYLLQRRNREAQNRLA 93

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
             +  L   L +  D   II++   I   N +   L G    +   +P    L       
Sbjct: 94  SALDYLQDSLASMRDAALIIDKRSAIAWCNESARSLLGVQFPEDRGQPILNLLRMPEFHA 153

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568
                         +  +        +E  + L   + +        L   D+++  + +
Sbjct: 154 YLD----------SEDYQYPLQVLPPQEGGVCLEFEVSRFGDGDRLILV-RDVTDRIRLE 202

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
                           + DF+A VSHE+RTPLT I G  ++  +     +G         
Sbjct: 203 E--------------MRQDFVANVSHELRTPLTVIKGHIQMAIDNP--TMGPDHLQRSLA 246

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            +D     + +++ DLL +S+IES +     E V++D+ +   ++ ++    ++ I +  
Sbjct: 247 QVDAQTARMENLLTDLLWLSRIESMEHERKTEWVAVDKLLETLVAELRPGFQDREIELEI 306

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748
                   ++ D++ +     N++ NA+ ++P+   +II         V + V+D G G+
Sbjct: 307 RTG---YAVMGDVKQLHSAVSNLIINALKYSPAESPVIIRGFIEEQGYV-IEVQDNGPGI 362

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
               L +  + F ++  S+     GTGLGL + K + +A+  +  I S    G++  ++F
Sbjct: 363 EAGHLPRLTERFYRVDKSRSQATGGTGLGLAIVKHVANAHNAELRIQSEVGVGSVFALVF 422


>gi|121997445|ref|YP_001002232.1| multi-sensor hybrid histidine kinase [Halorhodospira halophila SL1]
 gi|121588850|gb|ABM61430.1| Hpt sensor hybrid histidine kinase [Halorhodospira halophila SL1]
          Length = 790

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 80/258 (31%), Positives = 140/258 (54%), Gaps = 12/258 (4%)

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + + +   A+  AE+ +  KS+FLA ++HEIRTP+ A++G ++++ +       + + ++
Sbjct: 214 RAQQESERARAEAERANRAKSEFLANMNHEIRTPMNAVLGRTQLLLDTDL----DAQQLD 269

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           +   I  S  ++L I+ND+LDISKIESGK+ +      L E + +  +L    A+EK + 
Sbjct: 270 HLGKIHNSSKMLLGIINDILDISKIESGKLEIEPHRFDLREVIDQVDTLFSAAASEKGLD 329

Query: 686 IRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIST-----THTSNEEVIL 739
           +      ++PR+L  D   + Q+  N+LSNAI FTP GG + ++             V  
Sbjct: 330 VTYDIQPDLPRMLIGDSLRLTQVLSNLLSNAIKFTPRGGTVELNLHEVGEADDDAAHVRF 389

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
           +VRD+G+GM   +L++  +PF Q   S   +  GTGLGL + + +V    G+  + S P 
Sbjct: 390 QVRDSGIGMDAEQLKRIFQPFEQADASTTRQYGGTGLGLEIGRRLVTNMGGRLEVTSRPG 449

Query: 800 KGTL--IEIIFPLYDTSH 815
           +G+     +  P+ D  H
Sbjct: 450 QGSRFFFTLRLPIDDPGH 467


>gi|327192761|gb|EGE59694.1| two-component sensor histidine kinase/response regulator hybrid
           protein [Rhizobium etli CNPAF512]
          Length = 644

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 89/523 (17%), Positives = 180/523 (34%), Gaps = 38/523 (7%)

Query: 317 EGENLTPETVDKCPI--PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
           + E      VD       + +   G +   N        YK  + +      S       
Sbjct: 12  QEEGRFRLLVDAITDYAIYMLSPEGIVTSWNTGAQRFKGYKPSEILGE--HFSRFYIDED 69

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
            +     + +                   + +     A   +         E +    I 
Sbjct: 70  RAAGIPERALATALEQGR---FEGEGWRQRKDGSRFWA-HVVIDPIRRPSGELIGFAKIT 125

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDIL 493
            +  + +  +  +     Q   +++  SD  I +++ EG + S N    ++ GY  E+I+
Sbjct: 126 RDLTERKAAENAIRQSEEQFRRLVQGVSDYAIYMLDPEGNVSSWNFGAERIKGYRPEEII 185

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553
            + F+ F      +      T +         E+      K+       I++  +     
Sbjct: 186 GRHFSTFYTPEDRAAGLPE-TALSVARAEGRFEREGWRVRKDGTRFWASIVVDVIRGDDG 244

Query: 554 YSL----TMHDISEWKQEKNKLSHAKKIAEKES--SHKSDFLARVSHEIRTPLTAIIGFS 607
             L       DI+E  + +  L  A++   +             ++H+    L A++G  
Sbjct: 245 DVLGFAKITRDITEKMETQRALEQAREELFQSQKMEAIGQLTGGIAHDFNNLLMAVLGSL 304

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
           E++K +    L         +   +       +   +L  S+    +  LH EP+ +   
Sbjct: 305 EILKKRMPQDLS---LTSLVDNAMQGAQRGAALTQRMLAFSR----RQELHMEPIDVSGL 357

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727
           V   + ++   +      I T +   +P IL D   ++   LN++ NA    P+GG+I +
Sbjct: 358 VRGMMDILS-RSLGPLTTIETYYPVRLPTILTDPNQLEMAILNLVVNARDAMPAGGRITL 416

Query: 728 STTHT----------SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
             +            +   + + V D G GM    LE+A+ PF          G+GTGLG
Sbjct: 417 RASEESIAAGKGPLSAGRYIKIAVVDEGEGMDAKTLEQAVTPFFTTKG----VGKGTGLG 472

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820
           L + + +   + G+  + STP +GT  E+ FP+       + +
Sbjct: 473 LSMVQGLATQSGGRLILKSTPGEGTTAELWFPVVTIEKRTEAV 515



 Score = 76.2 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 43/430 (10%), Positives = 114/430 (26%), Gaps = 43/430 (10%)

Query: 67  YLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH 126
            L  E  F       T    + +   G +   +    +  G    +++G           
Sbjct: 10  SLQEEGRFRLLVDAITDYAIYMLSPEGIVTSWNTGAQRFKGYKPSEILGEHFSRFYIDED 69

Query: 127 ID---PNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI 183
                P   +   L++   + G+      +G+  +  + +   PI   + E  GF    I
Sbjct: 70  RAAGIPERALATALEQGR-FEGEGWRQRKDGSRFWAHVVID--PIRRPSGELIGFAK--I 124

Query: 184 VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSS-VEKEKYDIFSQQSPPP---HLRMKNK 239
                         ++ +++F  L +    ++  +   + ++ S           R +  
Sbjct: 125 TRDLTERKAAENAIRQSEEQFRRLVQGVSDYAIYMLDPEGNVSSWNFGAERIKGYRPEEI 184

Query: 240 VSS-LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFH-TINLNQYTKKQYFGTLQNNSK 297
           +    + +Y  +D      +  L  +      E+E +    +  ++        ++ +  
Sbjct: 185 IGRHFSTFYTPEDRAAGLPETALSVARAEGRFEREGWRVRKDGTRFWASIVVDVIRGDDG 244

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP--------IPFFVYSHGNLFYANPSFL 349
           +   +       +             E + +               +   NL  A    L
Sbjct: 245 DVLGFAKITRDITEKMETQRALEQAREELFQSQKMEAIGQLTGGIAHDFNNLLMAVLGSL 304

Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
            + K +   D+ +   +   +   +       + +   R           +  I  +   
Sbjct: 305 EILKKRMPQDLSLTSLVDNAMQGAQRGAALTQRMLAFSRRQ------ELHMEPIDVSGLV 358

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL---EATSDGIA 466
              M  +                  P  +         ++E+  L  ++   +A   G  
Sbjct: 359 RGMMDILSRSLGPLTTIETYYPVRLPTILTDPN-----QLEMAILNLVVNARDAMPAG-- 411

Query: 467 IINREGIILS 476
                G I  
Sbjct: 412 -----GRITL 416



 Score = 62.7 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/425 (8%), Positives = 98/425 (23%), Gaps = 33/425 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + +D  G +   +    +  G    ++IG                    L   +     
Sbjct: 157 IYMLDPEGNVSSWNFGAERIKGYRPEEIIGRHFSTFYTPEDRAAGLPETALSVARAEGRF 216

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +   W +          +    I   + +  GF    I        + +   ++  ++  
Sbjct: 217 EREGWRVRKDGTRFWASIVVDVIRGDDGDVLGFAK--ITRDITEKMETQRALEQAREELF 274

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHL------RMKN--KVSSLTEYYAHKDDVLKTE 257
              +++          +D  +              RM     ++SL +            
Sbjct: 275 QSQKMEAIGQLTGGIAHDFNNLLMAVLGSLEILKKRMPQDLSLTSLVDNAMQGAQRGAAL 334

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
              +L           +   ++                      Y   R    L+     
Sbjct: 335 TQRMLAFSRRQ-ELHMEPIDVSGLVRGMMDILSRSLGPLTTIETYYPVRLPTILTDPNQL 393

Query: 318 GENLTPETV---DKCPIP--FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
              +    V   D  P      + +      A    L   +Y  +  ++   G+      
Sbjct: 394 EMAILNLVVNARDAMPAGGRITLRASEESIAAGKGPLSAGRYIKIAVVDEGEGMDAKTLE 453

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
             ++               T +  S        +      +            E      
Sbjct: 454 QAVTP----FFTTKGVGKGTGLGLSMVQGLATQSGGR---LILKSTPGEGTTAELWFPVV 506

Query: 433 IEPEDVDTRINK-RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
              +  +      ++ +    +L          I  ++ +G++L     + +  G+ V +
Sbjct: 507 TIEKRTEAVAELPQRDDDAQRRLR---------IVAVDDDGLVLMNTTLMLEDLGHTVFE 557

Query: 492 ILRKP 496
            +  P
Sbjct: 558 AMAGP 562


>gi|320160098|ref|YP_004173322.1| putative two-component sensor histidine kinase [Anaerolinea
           thermophila UNI-1]
 gi|319993951|dbj|BAJ62722.1| putative two-component sensor histidine kinase [Anaerolinea
           thermophila UNI-1]
          Length = 528

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 84/370 (22%), Positives = 153/370 (41%), Gaps = 24/370 (6%)

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
           ++    +   + + + D I I    G IL +NR    L GYP E ++ K     L+    
Sbjct: 173 LQAVTRRYRELFDDSIDPICITGLNGQILESNRQAIALTGYPAEVLVGKTMQELLKLPAE 232

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII--KKLPFSSCYSLTMHDISEW 564
            + +     + +L   QTL +  L  T     + + + +     P        + DI+E 
Sbjct: 233 WLKD----HVETLGAGQTLHQEALLWTASLSTVPVEVHVRKVAFPNGDVLQWILQDITER 288

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           KQ                + + D +A V H++R+PL+ II   E + N       +    
Sbjct: 289 KQL--------------DALRDDLMAMVYHDLRSPLSNIISSLE-MLNMLLPVSDDENLR 333

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
              +   RS   +  ++N LLDI ++E+G+         +   V EA+  +   A  K  
Sbjct: 334 ALLSIAIRSTGRMQRLINTLLDIYRLEAGQPITSRAMTEIAPLVYEAVDTILPVAENKGQ 393

Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744
            +      N+P +  D   ++++ +N+L NA  +T   G+I +S  +   E V   VRD 
Sbjct: 394 QVDVQIEPNLPPLNIDADMIRRVLINLLDNATKYTLFKGKITLSV-YRKGERVEFAVRDN 452

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G G+    LE     F ++ +  +   +G GLGL   +  V ++ G+ ++ S   +G+  
Sbjct: 453 GPGIPPDALEVIFDKFARLQS--ERFPKGIGLGLAFCRLAVRSHGGEIWVESKLNEGSCF 510

Query: 805 EIIFPLYDTS 814
               P+  T 
Sbjct: 511 TFALPIPQTE 520



 Score = 45.4 bits (106), Expect = 0.038,   Method: Composition-based stats.
 Identities = 42/324 (12%), Positives = 91/324 (28%), Gaps = 25/324 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
              +G + E + +     G  A  ++G  + ++  +      +H+ + L    T + +  
Sbjct: 194 TGLNGQILESNRQAIALTGYPAEVLVGKTMQELLKLPAEWLKDHV-ETLGAGQTLHQEAL 252

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           LW    +   VP+++    +   N +   +    I+          AL    D   + ++
Sbjct: 253 LWTASLST--VPVEVHVRKVAFPNGDVLQW----ILQDITERKQLDAL---RDDLMAMVY 303

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
              +   S      ++ +   P         + S+      +   L      +   E   
Sbjct: 304 HDLRSPLSNIISSLEMLNMLLPVSDDENLRALLSIAIRSTGRMQRLINTLLDIYRLEAGQ 363

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
                    I    Y        +  N  +  +     N P L+   D    +    +D 
Sbjct: 364 PITSRAMTEIAPLVYEAVDTILPVAENKGQQVDVQIEPNLPPLNIDADMIRRVLINLLDN 423

Query: 329 CP--------IPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
                     I   VY  G  + +A             D +E+       L + +     
Sbjct: 424 ATKYTLFKGKITLSVYRKGERVEFAVR---DNGPGIPPDALEVIFDKFARLQSERFPKGI 480

Query: 380 AIKPVMLY---RSDRTCIAASARL 400
            +         RS    I   ++L
Sbjct: 481 GLGLAFCRLAVRSHGGEIWVESKL 504


>gi|152983814|ref|YP_001346548.1| two-component sensor [Pseudomonas aeruginosa PA7]
 gi|150958972|gb|ABR80997.1| probable two-component sensor [Pseudomonas aeruginosa PA7]
          Length = 1215

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 113/611 (18%), Positives = 221/611 (36%), Gaps = 42/611 (6%)

Query: 237 KNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS 296
             ++++L +  A    + ++ +         S            ++  + +  G L    
Sbjct: 348 PEQIAALQKGQADLAIMSRSSRREETLRFTRSFLSTSFVLIARADEKGRAERVGNLDGKR 407

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLF--------YANPSF 348
                            Y          T+D   +  +                Y    F
Sbjct: 408 LAIPSG-HVGIQGVRDRYPQAAVVEVETTLDAMNL-VYEGRAEAAVVPLVSARYYIVRLF 465

Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR------LHT 402
                      +  A     +            K + L  S         R      +  
Sbjct: 466 HERLAVADQVALGPATANFAVRRGDTELQTILDKAL-LSISPGDLSDVVNRWRSPPGMSG 524

Query: 403 IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
             W     L    +                   +  D    ++ +  ++  + ++ ++  
Sbjct: 525 QTWVDYTRLIAEIVAAAAGLLLLSLGWVTYQRRQIRDRLRVEQALSDQLQFVEALTDSMP 584

Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT---PSVMNHYLTEILSL 519
             + + +  G +LS NR+     G   E +L +       +N    P    +YL  +   
Sbjct: 585 PPLYVRDANGRMLSCNRSYLSSVGLVAEQVLNRTVLELPMENFETGPQFHRNYLEAMRDG 644

Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH----DISEWKQEKNKLSHAK 575
              +++ ++ LG     +   +   I+    ++     +     DISE ++   +L  AK
Sbjct: 645 RTIESVHEVVLG----GRKCWIDHWIQPFRDANGTVRGVICGWLDISEHRKLVAELKEAK 700

Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
            +A++ S  K+ FLA +SHEIRTP+ A+IG  E+   +      +            S  
Sbjct: 701 NLADEASRAKTTFLATMSHEIRTPMNAVIGILELALKRADTGRVD---RSSIEIAYASAK 757

Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI- 694
            +L+++ D+LDI++IESG++ L  +  +L E V     + +  A +KR+ +      +I 
Sbjct: 758 SLLELIGDILDIARIESGRLGLSPKRANLRELVESVARVFEGLARQKRLSLILDIDASIN 817

Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNE--EVILRVRDTGVGMTNY 751
             +L D    KQI  N++SNAI FT  G   I I          +V L V DTG+G++  
Sbjct: 818 GDVLLDAMRFKQILSNLVSNAIKFTDEGSISIRIDGHLVEPSLLQVNLCVEDTGIGISLG 877

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF--- 808
           + ++  +PF Q+        EGTGLGL + +++ +   G+  + S   +GT +++     
Sbjct: 878 DQQQLFRPFAQVER-NVQNTEGTGLGLVICRSLCEMMGGRLVMSSALGQGTRVDVELRLQ 936

Query: 809 ---PLYDTSHP 816
              P+  +  P
Sbjct: 937 VLEPVSVSERP 947



 Score = 39.2 bits (90), Expect = 3.2,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 61/241 (25%), Gaps = 7/241 (2%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           DA+G +   +     ++G  A +++   + ++             + L+         ++
Sbjct: 591 DANGRMLSCNRSYLSSVGLVAEQVLNRTVLELPMENFETGPQFHRNYLEAMRDGRTIESV 650

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFR-GFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
             +        ID    P    N    G   G+             A  K          
Sbjct: 651 HEVVLGGRKCWIDHWIQPFRDANGTVRGVICGWL---DISEHRKLVAELKEAKNLADEAS 707

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
             K    +    +            L +  K +          ++       LL      
Sbjct: 708 RAKTTFLATMSHEIRTPMNAVI-GILELALKRADTGRVDRSSIEIAYASAKSLLELIGDI 766

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
           L +     +  L    K+     L  +    FE L+ +   SL    D   N     +D 
Sbjct: 767 L-DIARIESGRLGLSPKRANLRELVESVARVFEGLARQKRLSLILDIDASING-DVLLDA 824

Query: 329 C 329
            
Sbjct: 825 M 825


>gi|239908418|ref|YP_002955160.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239798285|dbj|BAH77274.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 685

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 95/538 (17%), Positives = 195/538 (36%), Gaps = 59/538 (10%)

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI-----PFFVYSHGNLFYANPSF 348
           + + E       R   +          +    ++  P             G + Y + + 
Sbjct: 8   DPAAEMRRQAESRAAAAPEDEDLSDAAMARLILEASPAYLIRYAVKDGKPGPVSYVSSNI 67

Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
                +   + +        L+      D+       L         A A  +  +    
Sbjct: 68  DR-FGFSREELLTGRRSPWDLIH----PDDRDRVEAALRDHADAGRDAFALDYRQRTPDG 122

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468
               +T       +     +    +  +  ++ + +R +E+       +L++    I  +
Sbjct: 123 GVRHVTDRIQLHRDAAGRVVAVQALVLDVTESVLARRDLEM-------VLDSAPIPIVKV 175

Query: 469 ----NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
               + +  +   N A  +LFG     +  K      E             +L+ +    
Sbjct: 176 RLGDDGDRRLEYQNPAAERLFGKGATGLSCKNSLCNKETCP----------VLADESGLV 225

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
            E+  L +T   + + +    ++LP S      M D++E  + + +L+ A + AE  +  
Sbjct: 226 RERECLINTLAGERV-MYKTARRLPGSPSIIEAMIDVTELMRTRQRLTRAMEAAEAANRA 284

Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
           KS FLA +SHEIRTP+  I+G  E+       P       +Y +   +S   +L+I+ND+
Sbjct: 285 KSQFLATMSHEIRTPMNGIMGMIELAMATELTP----EQRDYIDLARQSAVHLLEIINDI 340

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRS 703
           LD S+IE+G+M L     SL +A+   + L +  A      +    A ++P  ++ D   
Sbjct: 341 LDFSRIEAGRMELARSRFSLGQALGVCLRLFEAPAARSGNRLSLDIAPDVPGELVGDPGR 400

Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNE-------EVILRVRDTGVGMTNYELEKA 756
           + QI  N++SN + FT   G + ++     +         +   V D G+G+   +  + 
Sbjct: 401 LAQIVANLVSNGLKFT-KNGFVRVAVGLDPDAPRKSGALSLRFDVSDDGIGIPTDKQARI 459

Query: 757 MKPFGQIPNSQQI-------RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
              F Q+  S                    ++K++V    G+ ++ S P +G+     
Sbjct: 460 FDYFTQLDASLNRGAGGTGLGLA-------ISKSLVTLMSGRIWVASDPGRGSTFSFT 510


>gi|322834088|ref|YP_004214115.1| PAS/PAC sensor signal transduction histidine kinase [Rahnella sp.
           Y9602]
 gi|321169289|gb|ADW74988.1| PAS/PAC sensor signal transduction histidine kinase [Rahnella sp.
           Y9602]
          Length = 439

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 69/402 (17%), Positives = 150/402 (37%), Gaps = 35/402 (8%)

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
            + L +         ++       G+    +  R  +R++   + +  S  E+  D + +
Sbjct: 54  SHWLWLDRSITPPNGRWSWEPLFYGLNQMQIRNRRRRRELGQLIKRFRSGAESLPDAVVL 113

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
              +G I   N     L G+   +   +     L      +              +   +
Sbjct: 114 TTEDGNIFWCNGLAQDLLGFRWPEDNGQHIFNLLRYPEFRLWI----------QTRDFSR 163

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
                   E  +  R++           +   D+++ +Q +                + +
Sbjct: 164 ALNLQLNNEHYVEFRVMPY---SEGQLLMVARDVTQMRQLEG--------------ARRN 206

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           F A VSHE+RTPLT + G+ E++++     L  P   +  + +      +  +V  LL +
Sbjct: 207 FFANVSHELRTPLTVLQGYLEMMED---AKLEEPFRTKALDTMQEQTRRMDGLVKQLLTL 263

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN-EKRILIRTSFANNIPRILADLRSVKQ 706
           SKIE+       E V +   +      VQ  +N    ++ R +   +  ++  +   ++ 
Sbjct: 264 SKIEASANIDLHEKVDIPVMLGMLEREVQTLSNGRHEVVFRVN---DKLKVFGNEDQLRS 320

Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
              N++ NA++ TP+G +I +S   T +     ++ D G G+    L +  + F ++  +
Sbjct: 321 AVSNLVYNAVNHTPAGTRIEVSWQQTPHG-AQFQISDNGPGIAPQHLPRLTERFYRVDKA 379

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           +  +  G+GLGL + K  +  +  K  + S    GT      
Sbjct: 380 RSRQTGGSGLGLAIVKHALSHHHTKLEVMSEVGVGTRFMFTL 421


>gi|258592528|emb|CBE68837.1| putative Histidine kinase [NC10 bacterium 'Dutch sediment']
          Length = 781

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 92/591 (15%), Positives = 182/591 (30%), Gaps = 41/591 (6%)

Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302
           L        + +         S   +     +           +         +      
Sbjct: 73  LRSPEYTAFNRIPILVVSWTFSGADAEQIAANLGANAFLSAPYEPSELRASVQALLEGRR 132

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEI 362
                   +         +            F  S G           L +  S     +
Sbjct: 133 PQLSMRTLIVEDSPMQSKILSRAFAAHGYTVFTASTG------EEARRLFRDHSPQIAIL 186

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
              L  +     L +       M+        +    L  ++   +  +   F P    +
Sbjct: 187 DYHLPDITADRLLEEFKQAAVRMVAIMITANPSPELALQFMRMGADGHVRKPFDPEHLID 246

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
              +   +  +   +       R++     Q   + E  +D I   +  G   + NR   
Sbjct: 247 LCEKAWRERSLLAVEDLLEERTRQLRERERQYAQLFENANDVIYTHDLSGRFTAFNRMAE 306

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
           ++ GY   + L       +      + +    + +  ++ + +       T+    + L 
Sbjct: 307 QITGYTRSEALTMHVAQVIAPEYLGLHHEITAQNVRGEISRDVC-ELEIVTRGGHRVPLE 365

Query: 543 IIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
           +    +  +           D+SE K+ + +L  A+K+              V+H+    
Sbjct: 366 VSSGPIYRNGEVVGVQGIARDVSEQKRLEAQLRQAQKM-----EAIGTLAGGVAHDFNNL 420

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           LT I+G+S ++   +          + A  I+ +G     + N LL  ++   GK     
Sbjct: 421 LTPILGYSRLL---KLRGQPGEDVYQAAQVIEGAGERCAQLANRLLGFAR--GGKH--QE 473

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719
            PV L  A  E + L+    + KRI I           L D   ++Q+ LN+  NA    
Sbjct: 474 MPVDLHTAAREVVDLLSRTID-KRITITQRLCVEQAVALGDPSQIQQVILNLAVNARDAM 532

Query: 720 PSGGQIIIST--------------THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           P GG +   T                T  + V+L V DTG+G+      +  +PF     
Sbjct: 533 PHGGNLHFETDVVTLDNDYCRRNLGATVGDYVMLSVTDTGMGIPQEIQGRVFEPFFTTKE 592

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
                G+G+G+GL +   +V  + G   ++S    GT  ++ +PL     P
Sbjct: 593 P----GKGSGMGLAMVYGIVKNHGGTIRVYSEEGSGTSFKVYWPLATGVVP 639



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/274 (11%), Positives = 62/274 (22%), Gaps = 7/274 (2%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            +  D  G     +    +  G    + + M +  V    ++  ++ I     R      
Sbjct: 289 IYTHDLSGRFTAFNRMAEQITGYTRSEALTMHVAQVIAPEYLGLHHEITAQNVRGEISRD 348

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
              L  +      VP+++++ PIY RN E  G +G  I           A  ++  K  +
Sbjct: 349 VCELEIVTRGGHRVPLEVSSGPIY-RNGEVVGVQG--IARDVSEQKRLEAQLRQAQKMEA 405

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
                             I              +                 +    L   
Sbjct: 406 IGTLAGGVAHDFNNLLTPILGYSRLLKLRGQPGEDVYQAAQVIEGAGERCAQLANRLLGF 465

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
                 QE    ++              +      + L      +L       + +    
Sbjct: 466 ARGGKHQEMPVDLHTAAREVVDLLSRTIDKRITITQRLCVEQAVALGDPSQIQQVILNLA 525

Query: 326 V---DKCPI-PFFVYSHGNLFYANPSFLLLTKYK 355
           V   D  P      +    +   N          
Sbjct: 526 VNARDAMPHGGNLHFETDVVTLDNDYCRRNLGAT 559


>gi|190894746|ref|YP_001985039.1| putative two-component sensor histidine kinase [Rhizobium etli CIAT
            652]
 gi|190700407|gb|ACE94489.1| probable two-component sensor histidine kinase protein [Rhizobium
            etli CIAT 652]
          Length = 1211

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 103/783 (13%), Positives = 238/783 (30%), Gaps = 73/783 (9%)

Query: 79   IPRTVRFTWNIDAHGYLKEISEELPK----------TIGNYAFKMIGMRLCDVSDILH-I 127
                VR  W+++  G     ++               +G  + + +   L  +       
Sbjct: 453  DAVPVR-VWSVEPTGGSIYFNKRYQDHFRAVIADFDAVGEPSIEDL---LQQLIHPEDAP 508

Query: 128  DPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187
            D    +    +  +    +      +G  +Y   +    P    + +    + +G+    
Sbjct: 509  DVQRTLRQCFESGDGTAMRFRWREQDG--VYRWAECRVEPRRDEDGKVV--QWYGVSLDI 564

Query: 188  RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKY----------DIFSQQSPPPHLRMK 237
              +       +  +++ S L ++                      D F            
Sbjct: 565  DEEVRALEALRDRERELSQLVDMVPAQIRRLTPTGEPVFFNKRLIDFFGLDVGDMDQPGV 624

Query: 238  NKVSSLTEYYAHKDDV-LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS 296
            +++S++     H DD     +              +      +            L++ +
Sbjct: 625  SRLSAVIHTLVHPDDAPRLLQTVHRSLVSGDPFSIKYRMRRFDGAYRWVDGRAEPLRDQN 684

Query: 297  KESFEYLSHRNHP----SLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLL 351
                ++                  E E    + VD  P   +     G   + N   +  
Sbjct: 685  GAITQWYVISVDIDDEMRAQEALRERERELSQLVDMVPSLLWRLDQDGTPTFFNQRLIDF 744

Query: 352  TKYKSVDD-IEIAGGLSTLLDAPKLSDNNA--IKPVMLYRSDRTCIAASARLHTIQWNRE 408
                 +D  +     L+ L++A    D+ A   + +    +     +   RL   +    
Sbjct: 745  LGLDIIDMKMPGLTRLAALIEAAVHPDDAASLTEALHHSLATGERFSKQYRL---RRADG 801

Query: 409  NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468
                +        ++    +   G+  +  D    + ++      L  I+E     I   
Sbjct: 802  VYRWVRGSAEPLRDENGRIIQWYGLTHDIDDQLRIEEELRERERSLWQIVETLPAMIDCA 861

Query: 469  NREGIILSTNRAVSKLFGYPVEDILRK-------PFTVFLEQNTPSVMNHYLTEILSLDL 521
              +G  +  N  +    GY +E++               +  +  + +   L    SL  
Sbjct: 862  APDGEPVYRNPRLRDFLGYKLEELDGTGKTRLDGTLDAGVHPDDVASVK--LDYAHSLRT 919

Query: 522  RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS----LTMHDISEWKQEKNKLSHAKKI 577
             +   +       + +   +      +  +        +   DI    + +  L   ++ 
Sbjct: 920  GEPYARRHRLRRFDGEYRWVETRAAPMRNAEGVIVQWNVICLDIDGEVRAEEDLRQVREG 979

Query: 578  AEKESS--HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN-PRYIEYANYIDRSG 634
              + S     ++  A ++HE+  PL A++  S   +        N  R       I R  
Sbjct: 980  LARASQVASLAELSASIAHEVNQPLAAVVANSHACQRWLMADPPNMERAQRTVERIIRDA 1039

Query: 635  NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
            N   D+V+ +  + K  + +        +L   V+EA SL+   A  +R  I  S  +N+
Sbjct: 1040 NSAADVVSRIRALFKQSADR----RVHTALSGVVNEARSLMADEAARRRARIEVSVDDNL 1095

Query: 695  PRILADLRSVKQIALNILSNAIHFTPS--GGQIIISTTHTSNEEVILRVRDTGVGM-TNY 751
            P I  D   ++Q+ +N++ N I    +  G ++I          +   + D G GM +  
Sbjct: 1096 PLIAVDRTQIQQVLINLIRNGIEAMDAVTGDKVIEMHVRHMGNTIQTEISDRGYGMESPE 1155

Query: 752  ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
               K  +PF            G G+GL + +++V+ + G+ +       G  +    P+ 
Sbjct: 1156 ---KMFEPFFTTKEH------GMGMGLAICRSIVELHGGRLWAEKNQPHGATLIFTLPIE 1206

Query: 812  DTS 814
              +
Sbjct: 1207 PKA 1209



 Score =  155 bits (392), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 53/531 (9%), Positives = 144/531 (27%), Gaps = 43/531 (8%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFK----MIGMRLCDVSDILHIDPNNHIGDLLK--- 138
            W +   G     ++ +   +G          +      +  I+H D        L    
Sbjct: 326 VWRLTPEGEPTFFNKRMVDFLGLDVADSDKPDMSRLEAILLAIVHPDDTAEFRAALSHCL 385

Query: 139 -RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG 197
               T+  +  L   +G  +Y  +   A P+  +       + +G+ H            
Sbjct: 386 VTGETFAMRYRLRRADG--VYRWMSSRAEPLRDQAGNV--LQWYGLCHDIDDQVHAEEAL 441

Query: 198 KRLDKKFSHLHEIKKGHSSVEKEKY----------DIFSQQSPPPHLRMKNKVSSLTEYY 247
           ++ +++   + +         +             D F           +  +  L +  
Sbjct: 442 RQSERQLQQMIDAVPVRVWSVEPTGGSIYFNKRYQDHFRAVIADFDAVGEPSIEDLLQQL 501

Query: 248 AHKDDVLKTEKY-PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
            H +D    ++              +  +   +      +      ++   +  ++    
Sbjct: 502 IHPEDAPDVQRTLRQCFESGDGTAMRFRWREQDGVYRWAECRVEPRRDEDGKVVQWYGVS 561

Query: 307 NHP----SLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVD-DI 360
                         + E    + VD  P     +   G   + N   +        D D 
Sbjct: 562 LDIDEEVRALEALRDRERELSQLVDMVPAQIRRLTPTGEPVFFNKRLIDFFGLDVGDMDQ 621

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
                LS ++      D+       ++RS  +    S +    +++      +       
Sbjct: 622 PGVSRLSAVIHTLVHPDDAPRLLQTVHRSLVSGDPFSIKYRMRRFDGA-YRWVDGRAEPL 680

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
            +Q         I  +  D    +  +     +L  +++     +  ++++G     N+ 
Sbjct: 681 RDQNGAITQWYVISVDIDDEMRAQEALRERERELSQLVDMVPSLLWRLDQDGTPTFFNQR 740

Query: 481 VSKLFGYPVEDILRKPFTVF-------LEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
           +    G  + D+     T         +  +  + +   L   L+   R    K      
Sbjct: 741 LIDFLGLDIIDMKMPGLTRLAALIEAAVHPDDAASLTEALHHSLATGER--FSKQYRLRR 798

Query: 534 KEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEK 580
            +     +R   + L   +     +    HDI +  + + +L   ++   +
Sbjct: 799 ADGVYRWVRGSAEPLRDENGRIIQWYGLTHDIDDQLRIEEELRERERSLWQ 849



 Score =  101 bits (252), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 40/331 (12%), Positives = 87/331 (26%), Gaps = 16/331 (4%)

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
             + +  PE +    I L  +        L   +      L+  +         E E   
Sbjct: 256 AGQFAGDPESQKNKQIMLQLFLAISALSALIVAAISRQHQLATFSLHRSLEALREREREL 315

Query: 323 PETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVD-DIEIAGGLSTLLDAPKLSDNNA 380
            + VD  P   + +   G   + N   +        D D      L  +L A    D+ A
Sbjct: 316 SQLVDMVPSHVWRLTPEGEPTFFNKRMVDFLGLDVADSDKPDMSRLEAILLAIVHPDDTA 375

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
                L     T    + R + ++        M+       +Q    +   G+  +  D 
Sbjct: 376 EFRAALSHCLVTGETFAMR-YRLRRADGVYRWMSSRAEPLRDQAGNVLQWYGLCHDIDDQ 434

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG--YPVEDILRKP-- 496
              +  +     QL  +++A    +  +   G  +  N+     F       D + +P  
Sbjct: 435 VHAEEALRQSERQLQQMIDAVPVRVWSVEPTGGSIYFNKRYQDHFRAVIADFDAVGEPSI 494

Query: 497 ---FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553
                  +       +   L +         +        ++         ++       
Sbjct: 495 EDLLQQLIHPEDAPDVQRTLRQCFESGDGTAMRF--RWREQDGVYRWAECRVEPRRDEDG 552

Query: 554 ----YSLTMHDISEWKQEKNKLSHAKKIAEK 580
               +     DI E  +    L   ++   +
Sbjct: 553 KVVQWYGVSLDIDEEVRALEALRDRERELSQ 583



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/188 (8%), Positives = 50/188 (26%), Gaps = 13/188 (6%)

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
           +  +   F+     +           +        +   +     +L  +++     +  
Sbjct: 269 KQIMLQLFLAISALSALIVAAISRQHQLATFSLHRSLEALRERERELSQLVDMVPSHVWR 328

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVF-------LEQNTPSVMNHYLTEILSLD 520
           +  EG     N+ +    G  V D  +   +         +  +  +     L+  L   
Sbjct: 329 LTPEGEPTFFNKRMVDFLGLDVADSDKPDMSRLEAILLAIVHPDDTAEFRAALSHCLVTG 388

Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKK 576
             +T          +     +    + L   +     +    HDI +    +  L  +++
Sbjct: 389 --ETFAMRYRLRRADGVYRWMSSRAEPLRDQAGNVLQWYGLCHDIDDQVHAEEALRQSER 446

Query: 577 IAEKESSH 584
             ++    
Sbjct: 447 QLQQMIDA 454


>gi|162456778|ref|YP_001619145.1| hypothetical protein sce8495 [Sorangium cellulosum 'So ce 56']
 gi|161167360|emb|CAN98665.1| unnamed protein product [Sorangium cellulosum 'So ce 56']
          Length = 919

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 118/754 (15%), Positives = 252/754 (33%), Gaps = 60/754 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS-DILHIDPNNHIGDLLKRQNTWYGKT 147
           I +      ++    +  G  +  ++G ++ +V  D  +     HI  +L  +     ++
Sbjct: 44  IGSDERYGVVNRAYERWFGEDSGSVVGRQVREVIGDAAYAAVKPHITAVLAGR-PQDFES 102

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
            L   EG   +V I    +P    + +  GF  F +V             + L    + L
Sbjct: 103 RLTYREGRRRHVRIQ--YIPHLGASGDVRGF--FALVADVSEQKRAEDARRFLADASAAL 158

Query: 208 HEIKKGHSSVEKEKYDIFSQQS--------PPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
              +   +   +      +  +         P        V+      A     L    +
Sbjct: 159 DPAQGRDAGFRRVAALAVASVADLCAVHTLEPDGSVHARVVAHADPAKAELAARLARRGH 218

Query: 260 PLLTSEESSLPEQEDFHT--------INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
           PL        P +E  H         +  +    + +   L+     S   +  R    +
Sbjct: 219 PLPAPGTPPSPLREVLHGGHGRLLPDLAGHALAGEDHLAVLRELGCRSAVIVPIRGDGCV 278

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
            A           T D   + F       +  A    + L       + E          
Sbjct: 279 LAALTLASAEAERTFDAADLAFAEELSQRIEVALQR-VRLYDMARDAESEAR----RRFL 333

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
           A + +   A +        +   AA A   T       ++A   +    A          
Sbjct: 334 AEQEARRAAERAAQRMAGLQRITAALADALT-----SEAVAQVVVDIGVAAAGAYAGTIV 388

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSI-LEAT---SDG------IAIINREGIILSTNRAV 481
               ++++           V +   + L+A    +D       + + +RE          
Sbjct: 389 VTAGDELECLKEVGYGRETVERFRQMPLDAALPLTDALRTGAPVWLRSRE-------ECS 441

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
           ++        +     ++             +  +   + R   ++         +  + 
Sbjct: 442 ARYPPIASAVLSGATVSLCCLPLVVQERPIGVLGLSFAEPRPFDQEEQEFLVAVSRQCAQ 501

Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
            +   +L            +   ++   + +   + A +    K +F+A +SHE+R PL 
Sbjct: 502 AMERARLHEERAAF-----VERERRVALENARLYREAHEADRRKDEFIAMLSHELRNPLA 556

Query: 602 AIIGFSEVIK---NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
            +    E+++       G   +    +    ++R    ++ +V+DLLD+S+I  GK+ L 
Sbjct: 557 PLTTGLELLQMSAQMSAGERADRDDRQILATLERQVKTIVRLVDDLLDVSRITRGKIELK 616

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718
            E + +   V  A+  V+    ++   +  S    +  +  D   ++Q+ +N+L+NAI +
Sbjct: 617 RERLDVASVVMAAVESVRPLLVQRGHDLVLSVDRGV-FVHGDRVRLEQVVVNLLNNAIKY 675

Query: 719 TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
           T  GG++ ++    +  +  +RV DTGVG++   L +  +PF Q   +      G G+GL
Sbjct: 676 TNPGGRVSLACAAIA-GDARIRVTDTGVGISAELLPRVFEPFMQARRTLDRSQGGLGIGL 734

Query: 779 PLAKAMVDANMGKFYIFS-TPAKGTLIEIIFPLY 811
            L K + + + G+    S  P +GT I +  PL 
Sbjct: 735 TLVKRLGELHGGRVEALSGGPGEGTAISVWLPLA 768


>gi|309791219|ref|ZP_07685751.1| two-component hybrid sensor and regulator [Oscillochloris
           trichoides DG6]
 gi|308226781|gb|EFO80477.1| two-component hybrid sensor and regulator [Oscillochloris
           trichoides DG6]
          Length = 657

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 83/249 (33%), Positives = 137/249 (55%), Gaps = 5/249 (2%)

Query: 565 KQEKN---KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           ++ +     L  A    E+ S  K +FLA +SHE+RTPL  I+G +E++    +GP+ N 
Sbjct: 246 RRVEERTADLMVANAELERASRLKDEFLANMSHELRTPLNTILGRAEILAEGIYGPI-NQ 304

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
              E    +  SG  +L ++ND+LD+SKIE+GK+ L    V +      +I +V   A +
Sbjct: 305 EQHEAVRSMSESGRHLLALINDILDLSKIEAGKLELQLSLVDMVTLCEASIRMVAQSALK 364

Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-VILR 740
           K I + +S +  +  I AD R +KQI +N+LSNA+ FTP+GGQ+ +      +++ V   
Sbjct: 365 KEIRLHSSISPQVDVIYADERRLKQILVNLLSNAVKFTPAGGQVELEVQTDPDQQSVSFT 424

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V DTG+G+   ++ +  +PF QI      + +GTGLGL L + + +A+ G   + S    
Sbjct: 425 VSDTGIGIAEADMARLFQPFVQIDAGLTRQHDGTGLGLVLVQRLTEAHGGSVAVQSQEGL 484

Query: 801 GTLIEIIFP 809
           G+   +  P
Sbjct: 485 GSSFTVRLP 493


>gi|227537039|ref|ZP_03967088.1| possible two-component hybrid sensor and regulator
           [Sphingobacterium spiritivorum ATCC 33300]
 gi|227243131|gb|EEI93146.1| possible two-component hybrid sensor and regulator
           [Sphingobacterium spiritivorum ATCC 33300]
          Length = 720

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 71/242 (29%), Positives = 126/242 (52%), Gaps = 3/242 (1%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           ++    +     + +KS+FLA +SHE+RTPL +I+  S  + ++      N   IE A  
Sbjct: 33  EIQEKAEELALSTKYKSEFLANMSHELRTPLNSILLLS-RLMSENTEENLNEDQIESAKV 91

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I  SG  +L +++++LD+SKIE+GKM L ++ V L +   E  SL      EK + +   
Sbjct: 92  IQSSGTSLLSLIDEILDLSKIEAGKMELEYQHVRLSDVTQELNSLFAPIVKEKSLDLNIV 151

Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRVRDTGVG 747
              ++   I  D   + Q+  N+LSNAI FT  G   + I+   ++   ++  V+DTG+G
Sbjct: 152 VQPDLDSTIETDRLRLDQVLRNLLSNAIKFTSKGSITLTITEEQSNRNNIVFAVKDTGIG 211

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           +   + +   + F Q   S + +  GTGLGL +++ +     G+  + S   +G++  +I
Sbjct: 212 IAEEKQKIIFEAFQQADGSTRRKFGGTGLGLSISREIARLLGGEIRLQSKENEGSIFSLI 271

Query: 808 FP 809
            P
Sbjct: 272 IP 273


>gi|315125164|ref|YP_004067167.1| sensor protein [Pseudoalteromonas sp. SM9913]
 gi|315013677|gb|ADT67015.1| sensor protein [Pseudoalteromonas sp. SM9913]
          Length = 908

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 80/258 (31%), Positives = 127/258 (49%), Gaps = 13/258 (5%)

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                 ++E  +    L  AK+ ++  +  KS FLA +SHEIRTPL A+IGFS + K++ 
Sbjct: 512 LALSRLVAERTR---SLVKAKQQSDLANQAKSRFLANMSHEIRTPLNAVIGFSTLAKSED 568

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                      Y N I+ +   +L ++ND+LDISKIES K+ L   P  L+  ++   S+
Sbjct: 569 SA----ETLTGYLNKINLASKSLLSLINDVLDISKIESQKLTLEVAPFDLNALLARISSM 624

Query: 675 VQLYANEKRILIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
            +  A +K I  +             D+  ++QI LN+ SNAI FT  G ++ +S     
Sbjct: 625 FEQSAEQKGINWKVDNQLPTDIWFEGDVMRIEQILLNLCSNAIKFTYEG-EVSVSAYSKE 683

Query: 734 ----NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
                 ++ L ++D+G+G+   E  K    F Q  +S   +  GTGLGL +AK +     
Sbjct: 684 ITDRRRQITLTIKDSGIGIAPSEQSKLFDAFTQADSSTSRKFGGTGLGLAIAKELSLLMS 743

Query: 790 GKFYIFSTPAKGTLIEII 807
           G   + S P KG+   + 
Sbjct: 744 GDISVQSEPGKGSTFTLS 761


>gi|283786671|ref|YP_003366536.1| two-component sensor kinase/response regulator [Citrobacter
           rodentium ICC168]
 gi|282950125|emb|CBG89761.1| two-component sensor kinase/response regulator [Citrobacter
           rodentium ICC168]
          Length = 918

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 85/333 (25%), Positives = 154/333 (46%), Gaps = 17/333 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +FG+ +   +  P    +               L   +   +             +++ +
Sbjct: 193 IFGWRLMRDVTGPIRNMVNTVDR-----IRRGQLDSRVEGFMLGELDMLKNGINSMAMSL 247

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 248 AAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTP 307

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+ +          N    ++ N I+RS N +L I+ND+LD SK+E+GK+ L  
Sbjct: 308 LNGVIGFTRLTLKTEL----NTTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILES 363

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P +L   + E ++L+   +++K + +  +  N++P  ++ D   ++Q+  N++ NAI F
Sbjct: 364 IPFALRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKF 423

Query: 719 TPSGGQ-IIISTTHTSNEEVILRV--RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T +G   I++     SN +V + V  RDTG+G+   +  +  + F Q   S   R  GTG
Sbjct: 424 TENGNIDILVEKRSISNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTG 483

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           LGL + + +V+   G     S P +G+      
Sbjct: 484 LGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516


>gi|331648511|ref|ZP_08349599.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           M605]
 gi|281179787|dbj|BAI56117.1| two-component sensor kinase [Escherichia coli SE15]
 gi|330908812|gb|EGH37326.1| BarA sensory histidine kinase ( VarS GacS) [Escherichia coli AA86]
 gi|331042258|gb|EGI14400.1| signal transduction histidine-protein kinase BarA [Escherichia coli
           M605]
          Length = 918

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 85/333 (25%), Positives = 153/333 (45%), Gaps = 17/333 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +FG+ +   +  P    +               L   +   +             +++ +
Sbjct: 193 IFGWRLMRDVTGPIRNMVNTVDR-----IRRGQLDSRVEGFMLGELDMLKNGINSMAMSL 247

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 248 AAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTP 307

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+ +       P       ++ N I+RS N +L I+ND+LD SK+E+GK+ L  
Sbjct: 308 LNGVIGFTRLTLKTELTPT----QRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILES 363

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P  L   + E ++L+   +++K + +  +  +++P  ++ D   ++QI  N++ NAI F
Sbjct: 364 IPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKF 423

Query: 719 TPSGGQ-IIISTTHTSNEEVILRV--RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T +G   I++     SN +V + V  RDTG+G+   +  +  + F Q   S   R  GTG
Sbjct: 424 TENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTG 483

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           LGL + + +V+   G     S P +G+      
Sbjct: 484 LGLVITQKLVNEMGGDISFHSLPNRGSTFWFHI 516


>gi|239908881|ref|YP_002955623.1| sensor histidine kinase [Desulfovibrio magneticus RS-1]
 gi|239798748|dbj|BAH77737.1| sensor histidine kinase [Desulfovibrio magneticus RS-1]
          Length = 745

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 75/409 (18%), Positives = 156/409 (38%), Gaps = 18/409 (4%)

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKR--KMEIEVMQLCSILEATSDGIAIINREG 472
                       ++   G   + +   + +    +     +  +++E   + I + + E 
Sbjct: 329 LTARTGLVAKDGDIGLVGEAFDAMAQAMEEGILALRETEARFRTLVEQAPEAIVVADVER 388

Query: 473 I-ILSTNRAVSKLFGYPVEDILRKPFTVFLE---QNTPSVMNHYLTEILSLDLRQTLEKI 528
             I+  N     LFG   +++ R     F      +   V              + +   
Sbjct: 389 EAIVLVNARAEALFGCTEQELRRHGVHRFYASRQPDGKPVAESIRENWNRALAGEDIIVE 448

Query: 529 TLGSTKEEKLLSLRIIIKKLPFSSCYSLT---MHDISEWKQEKNKLSHAKKIAEKESSHK 585
                   + +   + + + P  +   +      DI++ K+E+  L HA + AE  +  K
Sbjct: 449 RWLINALGQHVVCEVRLVRFPSKNNVPMVRSSWIDITQRKREEEALRHAIQAAEAANRAK 508

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
           S FL  +SHEIRTP+  + G   ++++       +     Y      +   +  ++  +L
Sbjct: 509 SIFLDNMSHEIRTPINGVNGMLHLMQSTDL----DDEQRLYIENAKFACTRLSKLLTAIL 564

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSV 704
           D + +E+    L     S+   +++        A +K +         +P  ++ D   V
Sbjct: 565 DYTTLEANGPQLENRLFSVVGLLNKVKDAHVAMAIDKGLQFDVELDPAVPAHLIGDEGKV 624

Query: 705 KQIALNILSNAIHFTPSG-GQIIISTTHTS---NEEVILRVRDTGVGMTNYELEKAMKPF 760
            +I   ++ NA+ FT  G  Q+ + +          V+  + D+G+GM    L+   +PF
Sbjct: 625 AKILGCLVENALKFTLEGFVQVTVFSAPRDTAKGRSVVFAIADSGIGMEEDCLDSIFEPF 684

Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            Q   S   + +G GLGL  A  +  A  G+  + S P +GT + ++ P
Sbjct: 685 FQGETSYTRQFQGAGLGLAFACRLARAMGGEIAVESRPEQGTTMWLLLP 733


>gi|284037063|ref|YP_003386993.1| PAS/PAC sensor signal transduction histidine kinase [Spirosoma
           linguale DSM 74]
 gi|283816356|gb|ADB38194.1| PAS/PAC sensor signal transduction histidine kinase [Spirosoma
           linguale DSM 74]
          Length = 828

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 113/844 (13%), Positives = 243/844 (28%), Gaps = 108/844 (12%)

Query: 56  DQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIG 115
                S  ++    S N +    +    +  W  DA G     S       G    + +G
Sbjct: 2   SAENPSPLDSTETSSSNEYQQRLLTAFAQAFWETDAQGMATADSPSWRAFTGQTLQQWLG 61

Query: 116 MRLCDVSDILH-IDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNRE 174
                               + L+ Q+    +  L   + T  +   ++ A PI +    
Sbjct: 62  EGWLKAVHPEDHAYALEQWQEALRSQHPMNAEFRLQTPQAT--WCWTNVRASPILNAEGS 119

Query: 175 FSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ--SPPP 232
             G+ G  IV             ++ +++F  L              +    Q       
Sbjct: 120 IQGWMG--IVLDITPQKQAELALRKSEEQFRLLVTASSDIVYKMSPDWSRMEQLMGKSFL 177

Query: 233 HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL 292
               +   + L  Y   +D              +S    +      +             
Sbjct: 178 ADTTQPSATWLQTYIPAEDQPSVQAVIQQAIRTKSIFELEHRVRKADGTVGWTFSRAIPR 237

Query: 293 QNNSKESFEYLSHRNHPSLSAYFDEGEN----LTPETVDKCPIPFFVYSHGNLFYANPSF 348
            +      E+L   +  +     +E            ++      ++ +   +   N + 
Sbjct: 238 LDEQGRIQEWLGVASDITQRRQAEEALRQSEARLRAVLESIVDGVYIGTLEGITLINQTA 297

Query: 349 LLLTKYKSVDDIEIAGGL---STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405
           L    Y + D++    G           +      ++     R+ R        L   + 
Sbjct: 298 LEQLGYATPDELNRHVGTLAGEIQTRDWQTGVLIPLEQQAFARALRGERVVQDVLVRHRL 357

Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465
           + ++   +            + +    I  +  D     R++E    +L   +E    G 
Sbjct: 358 SGQDR--VVRCAAGPVLVDEQVVAAVAINADVTDIVRVHRQVEESERRLQQAIELAELGT 415

Query: 466 AIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
             I      I   +  V+  +G P    +   F   ++      +N  LT+ L  +    
Sbjct: 416 YTIEVATDRITK-SARVADWYGLPERTTVASSFGS-IQARDRQRVNQVLTDALRPESSSF 473

Query: 525 LEKI---TLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHA----- 574
            +         T ++++L     + +            + DI+  +Q +  L        
Sbjct: 474 YQVEYTIIHPRTGQQRILRTNGQVHRDASGQPLRVEGIVVDITTQRQSQLALEQQVAQRT 533

Query: 575 ------------------------------------------------KKIAEKESSHKS 586
                                                            +   + + +  
Sbjct: 534 QELAAAMQQLEATNEALVVTSGQYALLNQELRASTAEVGKANNDLEEANRQLSRSNQNLE 593

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
            F    SH+++ PL  I  F + +      P        Y   +  + + +  ++ DLL 
Sbjct: 594 QFAYIASHDLQEPLRKIQQFGD-LLKSHVPPSSEENA--YLERMQAAASRMSRLIKDLLA 650

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706
            S+I  G++    EPVSL + +      + L   E    I+     ++P +  +   ++Q
Sbjct: 651 FSRIAMGQVLA--EPVSLADVLRRVQDTLSLAIEESSAQIQLD---DLPTLPGNATQLEQ 705

Query: 707 IALNILSNAIHF--TPSGGQ-------------------IIISTTHTSNEEVILRVRDTG 745
           +  N+LSNAI F  T   G+                   + +  +  +     + V D G
Sbjct: 706 LFQNLLSNAIKFSRTNQAGEPIIPQIRITSQMMNANELGVTVKPSRAATSYYQIEVADNG 765

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G       +  + F ++    +    GTG+GL + + +VD + G   + S P +G    
Sbjct: 766 IGFDEKYTPRIFQVFQRLHG--RNEFAGTGVGLAIVQKVVDNHGGAISVSSQPGQGARFR 823

Query: 806 IIFP 809
           +  P
Sbjct: 824 VYLP 827


>gi|94496374|ref|ZP_01302951.1| PAS/PAC sensor signal transduction histidine kinase [Sphingomonas
           sp. SKA58]
 gi|94424120|gb|EAT09144.1| PAS/PAC sensor signal transduction histidine kinase [Sphingomonas
           sp. SKA58]
          Length = 782

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 114/748 (15%), Positives = 257/748 (34%), Gaps = 59/748 (7%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH-IDPNNH--IGDLLKRQNTWYGKT 147
             G L E ++ L K +G          L +++     I+P +   +  ++       GK+
Sbjct: 63  PDGRL-EAADRLAKWLGRTRAPNF---LSELTAEDGGIEPEDAHALAQVIAA-AQRAGKS 117

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
              P+ G +    + +   P      E  G     ++       D +A  + L  + + L
Sbjct: 118 FALPVRGIDSTRLLLVRGAPAGPELAESGG-----VLLWIFDATDSQAEIQSLRSQVAQL 172

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
            +  +  + + +        ++P   L + N    +    A     + T+   L+ S   
Sbjct: 173 RDALEALAGLVEAAPFPMWHRTPDLRLSLVNSAY-VRAVDAQDAADVITQGIELVESVGG 231

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH-------------PSLSAY 314
             PE      +  +Q  ++    T+    +                              
Sbjct: 232 VPPEAAAADAMARDQLVERMVPATIDGERRMMRVVDVPLGDAGIAGYAVDQHELEQARVE 291

Query: 315 FDEGENLTPETVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
               E    + +D+       +    +  + N  F+ L      + +  A     +LD  
Sbjct: 292 GRRLEAAQRDLLDRLSAGVARFGPDRMLRFWNQPFMSLFGL-RQEALADAPVFERVLDQM 350

Query: 374 KLSDNNAIKPVMLYRSDRTCIAA---SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
           + +                                     L +   P             
Sbjct: 351 RDARRLPEHRDFPAWRSERRDWFLSPEPVEENWLLQDGTHLRVYAQPLPD---------- 400

Query: 431 NGIEPEDVDTRINKRKMEIEVMQL----CSILEATSDGIAIINREGIILSTNRAVSKLFG 486
            G      + R  + ++      L     +  +   + I +   +G +   N     ++G
Sbjct: 401 -GGLLLIFEDRTEQVQLSSARDTLLRVRTATFDNLFESIGVFAADGRLQMWNSRFRTIWG 459

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNH-----YLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
              E +   P    L ++  S +        + E++     +  +++      + ++   
Sbjct: 460 ASEELLATHPRIDDLMRDVQSRLAKPEQGNLVRELVRAATVERKQRMGHVGFADGRIFEF 519

Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
             I            TM D+++ ++ +  L    +  E+    K+ F+  +S+E+RTPLT
Sbjct: 520 AAIPLP---DGNALFTMLDVTDSRRVEQVLRDRNEALEQADKIKTAFVTNMSYELRTPLT 576

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
            I GF+E++     G L  P   +Y + I +S   +  +++++LD+++ E+G + +   P
Sbjct: 577 TIAGFAEMMSAGYAGELSEP-AKDYVSGILQSTGRLSMLIDNVLDLTQSEAGTLPIERLP 635

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           + L +     +  ++  A  K + +       +  +  D R + Q   ++L NA+ +   
Sbjct: 636 LDLGDLARARVERLRAEAVAKGMDLALDLTPAVGVVRGDERRIGQCIDHLLENALTYCSR 695

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           G +I++    T++    + + D G G+         +P  +   ++       G+GLPLA
Sbjct: 696 GARILLHGDGTAD-RARIVISDNGPGIPTERQRAIFEPLVRAEQARSGAK--AGMGLPLA 752

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           + +V A+ G   + S   +GT+I I  P
Sbjct: 753 RQLVQAHGGTLKLVSKKGQGTMILIELP 780



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/383 (10%), Positives = 94/383 (24%), Gaps = 29/383 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            W+      L  ++    + +       +  +  ++ + +   P          ++    
Sbjct: 190 MWHRTPDLRLSLVNSAYVRAVDAQDAADVITQGIELVESVGGVPPEAAAADAMARDQLVE 249

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +     I+G    + +    +P+        G  G+ +          R  G+RL+    
Sbjct: 250 RMVPATIDGERRMMRVVD--VPLGDA-----GIAGYAV--DQHELEQARVEGRRLEAAQR 300

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHL--RMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
            L +      +       +     P   L    +  ++    +    D +    + P   
Sbjct: 301 DLLDRLSAGVARFGPDRMLRFWNQPFMSLFGLRQEALADAPVFERVLDQMRDARRLPEHR 360

Query: 264 SEESSLPEQEDFHTINLNQY--TKKQYFGTLQNNSKESFEY------LSHRNHPSLSAYF 315
              +   E+ D+             Q    L+  ++   +               LS+  
Sbjct: 361 DFPAWRSERRDWFLSPEPVEENWLLQDGTHLRVYAQPLPDGGLLLIFEDRTEQVQLSSAR 420

Query: 316 DEGENLTPETVDKC--PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
           D    +   T D     I  F    G L   N  F  +                 + D  
Sbjct: 421 DTLLRVRTATFDNLFESIGVFAAD-GRLQMWNSRFRTIWGASEELLATHPRIDDLMRDVQ 479

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
                     ++        +    R+  + +          IP    N           
Sbjct: 480 SRLAKPEQGNLVRELVRAATVERKQRMGHVGFADGRIFEFAAIPLPDGNA-------LFT 532

Query: 434 EPEDVDTRINKRKMEIEVMQLCS 456
             +  D+R  ++ +      L  
Sbjct: 533 MLDVTDSRRVEQVLRDRNEALEQ 555


>gi|254292589|ref|YP_003058612.1| Hpt sensor hybrid histidine kinase [Hirschia baltica ATCC 49814]
 gi|254041120|gb|ACT57915.1| Hpt sensor hybrid histidine kinase [Hirschia baltica ATCC 49814]
          Length = 943

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 86/252 (34%), Positives = 133/252 (52%), Gaps = 11/252 (4%)

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
           +    AK+ AE  ++ KSDFLA +SHEIRTP+  ++  +E++           R+  YA 
Sbjct: 263 HDYRMAKEDAEAANAAKSDFLATMSHEIRTPMNGLLVMAEMLSAANLSM----RHRRYAE 318

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I RSG  +L I+ND+LD+SKIESGK++L   P   D  V +   L    A    + I T
Sbjct: 319 IISRSGKSLLTIINDILDLSKIESGKLDLETAPFEPDAMVEDIACLFWEKARSNNVEIAT 378

Query: 689 SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEE---VILRVRD 743
             + N P+ IL D+  + Q+  N+++NA+ FT  GG +I +      N +   + + V D
Sbjct: 379 YISPNTPQSILGDVTRLNQVVTNLVNNALKFTEKGGVEIRVDGRLNKNGQRVRLRIDVID 438

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TG+G+    L++  + F Q   S   +  GTGLGL + K ++ A  G   + S   KG+ 
Sbjct: 439 TGIGIPADRLDQIFEAFSQADQSTTRKFGGTGLGLAVCKRLMHAMGGDVKVASAEGKGSC 498

Query: 804 IEII--FPLYDT 813
              I  FP+ +T
Sbjct: 499 FTAIADFPIVET 510


>gi|255039054|ref|YP_003089675.1| PAS/PAC sensor signal transduction histidine kinase [Dyadobacter
           fermentans DSM 18053]
 gi|254951810|gb|ACT96510.1| PAS/PAC sensor signal transduction histidine kinase [Dyadobacter
           fermentans DSM 18053]
          Length = 421

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 69/404 (17%), Positives = 148/404 (36%), Gaps = 49/404 (12%)

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
             +  L ++ +  ++GI +++++  I+  N    +LFGY   +++ +     + Q     
Sbjct: 15  RHIEMLDALFKHATEGIVVVDKQANIVMLNPKAKELFGYTDRELIGRKVETLIPQRFNRN 74

Query: 509 MNHYLTEILSLDLRQTLEK--ITLGSTKEEKLLSLRIIIKKLPFSSCYSLT--MHDISEW 564
              Y  E L     + +          K+     + + +     S    +   + DI+E 
Sbjct: 75  HVGYRDEYLEAPRARGMGHMMDLFARRKDGSEFPVEVSLSPFKTSDGEFVVSFVIDITER 134

Query: 565 KQEK-----------------NKLSHAKKIAEKE----------------------SSHK 585
           K+++                  +    +                            ++ K
Sbjct: 135 KKQESRIIEANLEIQKLNAELEERVQQRTEELAAAIKRIEQSQEEVVRALTKERELNNMK 194

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
           S F+   SHE RTPL  I+  +  +  +        +  ++   I  +   + +I+ND L
Sbjct: 195 SQFVTIASHEFRTPLATILSSA-SLIGRYARTEDEEKRQKHVQRIKSTVTNLTEILNDFL 253

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
            I K+E G+++       L+E     I  ++    E    +  ++         D + ++
Sbjct: 254 SIGKLEEGRIHAIPVLTDLNEFCKNLIEEIKGLCKE-GQQMNFTYEGE-AHAWLDKQLLR 311

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
            +  N+LSNAI ++  G  I +   +     + + V+D G+G+   +       F +  N
Sbjct: 312 NVLFNLLSNAIKYSEMGKSIFLRIKNW-GGLIRIEVQDQGIGIPEKDQGHIFDRFFRAHN 370

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +     +GTGLGL + +  ++   G     S    GT   +  P
Sbjct: 371 AGN--AQGTGLGLNIVQNYIELMGGTVRFQSEVNTGTTFFVELP 412



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/153 (11%), Positives = 44/153 (28%), Gaps = 16/153 (10%)

Query: 321 LTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEI--------------AGG 365
           +             V     N+   NP    L  Y   + I                 G 
Sbjct: 19  MLDALFKHATEGIVVVDKQANIVMLNPKAKELFGYTDRELIGRKVETLIPQRFNRNHVGY 78

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
               L+AP+      +  +   R D +       L   + +    +    I   +  +  
Sbjct: 79  RDEYLEAPRARGMGHMMDLFARRKDGSEFPVEVSLSPFKTSDGEFVVSFVIDITERKKQE 138

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458
             + +  +E + ++  + +R ++    +L + +
Sbjct: 139 SRIIEANLEIQKLNAELEER-VQQRTEELAAAI 170



 Score = 41.9 bits (97), Expect = 0.43,   Method: Composition-based stats.
 Identities = 15/160 (9%), Positives = 43/160 (26%), Gaps = 15/160 (9%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID-----PNNHIGDLLKRQNTW 143
           +D    +  ++ +  +  G    ++IG ++  +             + ++     R    
Sbjct: 34  VDKQANIVMLNPKAKELFGYTDRELIGRKVETLIPQRFNRNHVGYRDEYLEAPRARGMGH 93

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR----ALGKR 199
                    +G+    P++++  P  + + EF        V                   
Sbjct: 94  MMDLFARRKDGS--EFPVEVSLSPFKTSDGEFV----VSFVIDITERKKQESRIIEANLE 147

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK 239
           + K  + L E  +  +           Q        +  +
Sbjct: 148 IQKLNAELEERVQQRTEELAAAIKRIEQSQEEVVRALTKE 187


>gi|253699912|ref|YP_003021101.1| multi-sensor hybrid histidine kinase [Geobacter sp. M21]
 gi|251774762|gb|ACT17343.1| multi-sensor hybrid histidine kinase [Geobacter sp. M21]
          Length = 1322

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 97/744 (13%), Positives = 221/744 (29%), Gaps = 97/744 (13%)

Query: 86   TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
             + +   G +   +      +G    + + M + +++     +        LK++ +   
Sbjct: 518  VYWVTPEGEISYTNHAASTMLGYSREEFLRMAIAELNPAYRGESWTGYWQELKQKGSLQL 577

Query: 146  KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR-ALGKRLDKKF 204
            +T     +G  + V +                      V           AL  RL    
Sbjct: 578  ETAHRAKDGRMVPVEVTSNYCSYKGTEFN------CATVRDITERKRMELALEHRLAVLT 631

Query: 205  SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
              +  + +       +  ++ + Q                   AH    L T+      +
Sbjct: 632  EPMVNLARITVEDLFDLEELQAIQDSF--------------AEAHGVASLITDAQGRPVT 677

Query: 265  EESSLPEQ-EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
              S+  E  E     +      +     L    +                          
Sbjct: 678  RPSNFCELCEVIRGTDKGLANCRHSDAALVGMDRSGPCLQPC------------------ 719

Query: 324  ETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
                      +    G                          +   L  P L D+  +  
Sbjct: 720  -----LSGGLWDGGAGIHV-------------------GGYHVGNWLVGPVLDDSCDLGR 755

Query: 384  VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
            +  Y  +             +  R +      +         +         +      +
Sbjct: 756  MTQYADEIGADPVRYSDALSRVRRMSREQFEKVCRSLFQIAGQLSRMAIQNVQQAQHIAD 815

Query: 444  KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            + + E  +++   ++E + D I +++R+      NR+  +  G  ++ ++ +     L  
Sbjct: 816  RVRAEELLLEYRKVIECSQDQIYVLDRDYRYRMANRSFLEYRGVSLDQVVGRTAAEVLGD 875

Query: 504  NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL-TMHDIS 562
               + +   + + L+     + E     + +  +   +     +    S      + D +
Sbjct: 876  EFFASVKPQVDQCLA-GKAVSFEIENESAERGVRFEVVTFNPIEDKSGSIRVACVISDQT 934

Query: 563  EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
            E K    +L  ++K+              ++H+    LT I+G+  +++      L    
Sbjct: 935  EKKHLGEQLRQSQKM-----EAVGHLAGGIAHDFNNILTVIVGYGNLLEMDGSLTLH--- 986

Query: 623  YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
              E    I  +      +   LL  S+    +  ++   + L+  V++    + L    +
Sbjct: 987  QKEQVEQIVAASERGSQLTRGLLTFSR----RQIMNPSVLDLNALVNQIQKFL-LRIIGE 1041

Query: 683  RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS--------- 733
             I +  +       + AD   ++QI +N+ +NA    P GG + I               
Sbjct: 1042 DIRLLFNPYPEALNVFADASQLEQILMNLATNARDAMPEGGGLSIELAVQDIDEAYARSQ 1101

Query: 734  -----NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                      + V DTG GM     E+  +PF     S ++ G+GTGLG+ +   +V  +
Sbjct: 1102 GYGSPGRYACIMVSDTGEGMDQETRERIFEPFF----STKVVGKGTGLGMSIVYGIVKQH 1157

Query: 789  MGKFYIFSTPAKGTLIEIIFPLYD 812
             G   ++S P +GT  +I  PL +
Sbjct: 1158 KGFINVYSEPGEGTAFKIYLPLIE 1181



 Score = 86.6 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/307 (14%), Positives = 87/307 (28%), Gaps = 20/307 (6%)

Query: 287 QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV------DKCPIPFFVYSHGN 340
           Q             E L   N        DE        +      D   +       G 
Sbjct: 333 QEMARQAEERLRIEETLFFINECGARQREDELLAGICRYLCACLDADYAYVGELSAEKGR 392

Query: 341 LFYANPSFL-LLTKYKSVD-DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398
           +     SF       + ++ D+  A     +   P++  +   +   L R  +   A   
Sbjct: 393 IR--TRSFQGRNGVIEDLEYDLLGAPCQDVVGKTPRMHPSGVRELYPLQRMLQDLEAEGY 450

Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS-- 456
               ++       A+  +                +          + +    +  L    
Sbjct: 451 AGVPLR--DSQGNAIGVLAILSRRPLANLPIIETVLQIAGARVAQELEAMSHLEDLNLKD 508

Query: 457 -ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
             +E  +D +  +  EG I  TN A S + GY  E+ LR                 Y  E
Sbjct: 509 FTIENINDAVYWVTPEGEISYTNHAASTMLGYSREEFLRMAIAELNPAYRGESWTGYWQE 568

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCYSLTMHDISEWKQEKNKLSH 573
           +       +L+  T    K+ +++ + +         +     T+ DI+E K+ +  L H
Sbjct: 569 LKQKG---SLQLETAHRAKDGRMVPVEVTSNYCSYKGTEFNCATVRDITERKRMELALEH 625

Query: 574 AKKIAEK 580
              +  +
Sbjct: 626 RLAVLTE 632


>gi|124266005|ref|YP_001020009.1| PAS/PAC sensor hybrid histidine kinase [Methylibium petroleiphilum
           PM1]
 gi|124258780|gb|ABM93774.1| PAS/PAC sensor hybrid histidine kinase [Methylibium petroleiphilum
           PM1]
          Length = 975

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 90/383 (23%), Positives = 162/383 (42%), Gaps = 18/383 (4%)

Query: 442 INKRKMEIEVMQLCSI-LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
                ++    +L  I L+   + + +++  G  L  NRA  +  G  ++DI  +PF   
Sbjct: 23  RATDDVQTHREKLARIVLDELYEFVGLLDAHGTTLEINRAALEGAGIALDDIQGRPFWEA 82

Query: 501 LEQNTPSVMNHYLTEILSL---DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT 557
               T   +     E++           +    G    ++ + +   +  +  +S   + 
Sbjct: 83  RWWATSPEVRREQREVIRRAGEGEFVRRDFEIYGQQGGQETILIDYSLLPIRDNSGKIVF 142

Query: 558 M----HDISEWKQEKNKLSHAKKIAEKE-------SSHKSDFLARVSHEIRTPLTAIIGF 606
           +     +I++ K+ + +++   +  ++           KSDF A VSHE+RTPL  I+G 
Sbjct: 143 LLPEGRNITDKKRAEAEIARKNRELQRLLDKIQRLDDAKSDFFANVSHELRTPLALILGP 202

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
           SE +     G   +         I R+  +++  VNDLLD++K ++GKM L +  V L  
Sbjct: 203 SESLLATSEG--LSDAQRRDLRVIQRNAAMLMKHVNDLLDLAKFDAGKMALRYTRVDLAA 260

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726
            V    +  +  A E+ +         +  +  D +  ++I LN+LSNA  FTP  G+I 
Sbjct: 261 EVRTLAAHFEAVAAERSLSYVVQAPAAL-EVEVDQQMFERILLNLLSNAFKFTPDFGRIR 319

Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
            S     +  + L V D+G G+     E+  + F Q  +       GTGLGL +AK  VD
Sbjct: 320 CSLEANPDHSIQLVVEDSGCGVRADLREEIFERFHQAQSGTTRSFSGTGLGLAIAKEFVD 379

Query: 787 ANMGKFYIFSTPAKGTLIEIIFP 809
            + G   +      G    +  P
Sbjct: 380 LHTGTISVSDAIGGGAQFRVELP 402



 Score =  227 bits (579), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 92/674 (13%), Positives = 232/674 (34%), Gaps = 51/674 (7%)

Query: 181 FGIVHVNRVDNDPRALGKRLDK-----KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR 235
           FG +  +   N   ++   ++      +     EI +     +      FS  +      
Sbjct: 315 FGRIRCSLEANPDHSIQLVVEDSGCGVRADLREEIFERFHQAQSGTTRSFSG-TGLGLAI 373

Query: 236 MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN 295
            K  V   T   +  D +    ++ +     + L          L    + Q  GT++  
Sbjct: 374 AKEFVDLHTGTISVSDAIGGGAQFRVELPSRAPLGAYIRSVDSPLGNRNRGQIVGTIEEL 433

Query: 296 SKESFEYLS--HRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLT 352
            +  F+ +S    +   L    ++  ++    V+     F  V++   L     +     
Sbjct: 434 QRAEFDAVSDLSGSEKPLVLVAEDNADMRRFIVEVLSSDFRVVHAADGLQALTQARAQAP 493

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDN-----------NAIKPVMLYRSDRTCIAASARLH 401
                D +    G   L+   + +              A + + L     +      +  
Sbjct: 494 DAIITDLMMPKLGGDKLVSELRSTPELAHIPVLVLSAKADESLRLKLLSDSVQDYIVKPF 553

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT--------RINKRKMEIEVMQ 453
           + +        +  +   +     E   QN    +            + +   ++    +
Sbjct: 554 SSRELLVRVRNIVTMKLAREALQKELASQNEDLAQLTQQLIASKQGLQRSHDALKESERR 613

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
             ++ E T+ G+++ + +G + + N A+ ++ GY   +++     +   +         L
Sbjct: 614 WRAVYENTAVGVSLSDLQGNMHAANPALQEMLGYTESELIGLGNLMTDAEAGHEDRRLQL 673

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKN 569
             ++    +  + +      +    +   +    +P +S         + DI+  K+ + 
Sbjct: 674 ERLV-NGSQVEMRQQRRYRHRNGMTILANVRESLIPGTSDLPPTLITVVEDITTQKRAEV 732

Query: 570 KLSHAKKIAEKESSH--KSDFLARVSHEIRTPLTAII--GFSEVIKNQRFGPLGNPRYIE 625
           +L+  K    + S      +  A ++HE+  PLTA++  G +  ++     P  +    +
Sbjct: 733 ELAQTKDALARVSRVTTMGELAASIAHEVNQPLTAVVVNGHA-CLRWLSTEPRNDLEVQD 791

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
               I R  N   +++  +    K    +       V +D  V + I L +       + 
Sbjct: 792 AIQRIVRDANRASEVIARIRGFLK----RSKTDRTMVCMDNVVEDVIGLARDSLRSAGVQ 847

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT---SNEEVILRVR 742
           +     +++PR+ AD   ++Q+ LN++ N I    S   +             ++ + V 
Sbjct: 848 LIKHVDSDLPRVFADSVQLQQVILNLMMNGIEAMGSCATLERQLELRVVKHGGDIDVSVS 907

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D+G G+   + E+  + F            G G+GL + +++V+A+ G+ +  +   +G 
Sbjct: 908 DSGTGLVTADFERIFEAFYTTKPD------GMGMGLAICRSIVEAHGGRLWAQANKTQGL 961

Query: 803 LIEIIFPLYDTSHP 816
            ++   P+ + + P
Sbjct: 962 TLQFRLPIAEHAEP 975



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/255 (12%), Positives = 72/255 (28%), Gaps = 17/255 (6%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV-----SDILHIDPNNHIGDLLKR 139
           F   +DAHG   EI+    +  G     + G    +      S  +  +    I    + 
Sbjct: 46  FVGLLDAHGTTLEINRAALEGAGIALDDIQGRPFWEARWWATSPEVRREQREVIRRAGEG 105

Query: 140 QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199
           +         +  +G    + ID + LPI   + +       G            A    
Sbjct: 106 EFVRRDFEI-YGQQGGQETILIDYSLLPIRDNSGKIVFLLPEG--RNITDKKRAEA---E 159

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
           + +K   L  +      ++  K D F+  S      +   +       A  + +   ++ 
Sbjct: 160 IARKNRELQRLLDKIQRLDDAKSDFFANVSHELRTPLALILGPSESLLATSEGLSDAQRR 219

Query: 260 PLLTSEESS------LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
            L   + ++      + +  D    +  +   +     L    +    +          +
Sbjct: 220 DLRVIQRNAAMLMKHVNDLLDLAKFDAGKMALRYTRVDLAAEVRTLAAHFEAVAAERSLS 279

Query: 314 YFDEGENLTPETVDK 328
           Y  +        VD+
Sbjct: 280 YVVQAPAALEVEVDQ 294



 Score = 46.9 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 16/146 (10%), Positives = 46/146 (31%), Gaps = 3/146 (2%)

Query: 315 FDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
               E L    +D+       + +HG     N + L      ++DDI+          A 
Sbjct: 29  QTHREKLARIVLDELYEFVGLLDAHGTTLEINRAALEGAGI-ALDDIQGRPFWEARWWAT 87

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
                   + V+    +   +     ++  Q   + ++ + +      +   + +     
Sbjct: 88  SPEVRREQREVIRRAGEGEFVRRDFEIYGQQ-GGQETILIDYSLLPIRDNSGKIVFLLPE 146

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILE 459
                D +  + ++  +  +L  +L+
Sbjct: 147 GRNITDKKRAEAEIARKNRELQRLLD 172


>gi|171315610|ref|ZP_02904845.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ambifaria
           MEX-5]
 gi|171099281|gb|EDT44040.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ambifaria
           MEX-5]
          Length = 530

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 73/371 (19%), Positives = 150/371 (40%), Gaps = 23/371 (6%)

Query: 453 QLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
           +  +++ + +D  + +++  G I + N    ++ G+  ++I+   F+ F      +    
Sbjct: 30  RFQTVVASITDYAVFMLDPHGNIATWNAGAERIKGFRTDEIIGSHFSRFYPAEAIAAGRP 89

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQE 567
                 +       +       K+       + I  +         +     D++E K+ 
Sbjct: 90  AHALEAAAAYGH-FQDENWRVRKDGSRFWASVTITAVRDESHQLRGFIKITRDMTERKRV 148

Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRT---PLTAIIGFSEVIKNQRFGPLGNPRYI 624
           +          E  +     F+A ++HE+R    PL   IG  + + +   GP       
Sbjct: 149 EE--------LEAATRRLDVFIATLAHELRNQLAPLRHTIGILQGLPSSELGPA----LT 196

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           +  +  DR    ++ +V+DLLDI +I+S K+ L   P+++ + V  ++  +Q   + +  
Sbjct: 197 QCKDIADRQIEQLVRLVDDLLDIGRIKSDKVELKKAPLNVRDIVYRSVQGIQPKVDARGQ 256

Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744
            I          +  D   + Q+  N+L NA  ++P+G +I I      N  V + V D 
Sbjct: 257 QIVVRLPPAPVIVHGDDVRLVQVLYNLLDNASKYSPNGERIEIHVRTEQN-VVAIEVVDY 315

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTL 803
           G+G+     E    PF Q   +++    G GLGL ++K  VD + G     S     G+ 
Sbjct: 316 GIGIVPGAQESIFDPFEQENAAERHAPGGLGLGLAISKKFVDLHGGSITADSAGIGAGSS 375

Query: 804 IEIIFPLYDTS 814
             +  P  +++
Sbjct: 376 FTVRLPAAESN 386



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/285 (9%), Positives = 67/285 (23%), Gaps = 5/285 (1%)

Query: 48  SFEQ-SNFTDQNQESVSNTNYLDSENTFVFDPIPRTVR--FTWNIDAHGYLKEISEELPK 104
           + +Q       +  +      LD    F F  +  ++     + +D HG +   +    +
Sbjct: 2   TPDQPQPIPSDHPPAQHEQPLLDRYAEFRFQTVVASITDYAVFMLDPHGNIATWNAGAER 61

Query: 105 TIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLA 164
             G    ++IG           I        L       + +   W +          + 
Sbjct: 62  IKGFRTDEIIGSHFSRFYPAEAIAAGRPAHALEAAAAYGHFQDENWRVRKDGSRFWASVT 121

Query: 165 ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDI 224
              +   + +  GF    I            L     +    +  +     +        
Sbjct: 122 ITAVRDESHQLRGF--IKITRDMTERKRVEELEAATRRLDVFIATLAHELRNQLAPLRHT 179

Query: 225 FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYT 284
                  P   +   ++   +    + + L      LL        + E        +  
Sbjct: 180 IGILQGLPSSELGPALTQCKDIADRQIEQLVRLVDDLLDIGRIKSDKVELKKAPLNVRDI 239

Query: 285 KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
             +    +Q       + +  R  P+      +   L     +  
Sbjct: 240 VYRSVQGIQPKVDARGQQIVVRLPPAPVIVHGDDVRLVQVLYNLL 284



 Score = 41.2 bits (95), Expect = 0.80,   Method: Composition-based stats.
 Identities = 12/130 (9%), Positives = 39/130 (30%), Gaps = 7/130 (5%)

Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
           F +  HGN+   N     +  +++ + I      S    A  ++       +    +   
Sbjct: 44  FMLDPHGNIATWNAGAERIKGFRTDEIIG--SHFSRFYPAEAIAAGRPAHALEAAAAYG- 100

Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
                     ++ +     A +       ++  +      I  +  + +  + ++E    
Sbjct: 101 --HFQDENWRVRKDGSRFWA-SVTITAVRDESHQLRGFIKITRDMTERKRVE-ELEAATR 156

Query: 453 QLCSILEATS 462
           +L   +   +
Sbjct: 157 RLDVFIATLA 166


>gi|71908962|ref|YP_286549.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase, HAMP region:histidine
           kinase A, N-terminal:Hpt [Dechloromonas aromatica RCB]
 gi|71848583|gb|AAZ48079.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase, HAMP region:Histidine
           kinase A, N-terminal:Hpt [Dechloromonas aromatica RCB]
          Length = 923

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 82/252 (32%), Positives = 129/252 (51%), Gaps = 12/252 (4%)

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           Q   +L  AK+ AE  S  KS+FLA +SHEIRTP+  ++G +E++      P       +
Sbjct: 251 QRTRELRLAKEAAEAGSQAKSEFLATMSHEIRTPMNGVLGMTELLLGTELEPT----QRQ 306

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           +   ++RSG  +L I+ND+LD SKIE+GK+ L      L   + E++ L    A  K + 
Sbjct: 307 FVEAVERSGKHLLHIINDILDFSKIEAGKLELDVVDFDLRNLLEESLELFSQPARRKGLE 366

Query: 686 IRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIIS---TTHTSNE-EVILR 740
           +      +    +  D   ++QI  N+L NA+ FT +G +I++         N  ++ L 
Sbjct: 367 LVADLPPDEKLIVRGDPLRLRQIVTNLLGNAVKFTETG-EILLRLLVVEPRDNGLKLALV 425

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V DTG+G+     EK  + F Q   S   +  GTGLGL + + +VD   G+ ++ STP K
Sbjct: 426 VSDTGIGIPLDAQEKIFEHFLQADGSTTRKYGGTGLGLAICRHLVDMMGGRIHVESTPGK 485

Query: 801 GTLIEII--FPL 810
           G    +    PL
Sbjct: 486 GAAFTVELDLPL 497


>gi|110633906|ref|YP_674114.1| periplasmic sensor signal transduction histidine kinase
           [Mesorhizobium sp. BNC1]
 gi|110284890|gb|ABG62949.1| periplasmic sensor signal transduction histidine kinase
           [Chelativorans sp. BNC1]
          Length = 505

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 94/249 (37%), Positives = 152/249 (61%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I+E +  K     A+  AE+ +  KS FLA +SHE+RTPL AI+GFSEV+  +  GP+ N
Sbjct: 236 IAELETAKAVSDEARHRAEEANLAKSRFLASMSHELRTPLNAILGFSEVMAKEVLGPVQN 295

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
             Y EYA  + +SG  +L+++N++LD+S+IE+G+  L+ EP++L + V E   ++ L   
Sbjct: 296 VTYREYAKDVHQSGQHLLELINEILDLSRIEAGRYQLNEEPLALADIVHECCRMMDLKLK 355

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
            K I +   F  ++  ++AD R+V+QI+LN+LSNA+ FTPSGG+I +    TS     + 
Sbjct: 356 AKDIKLVQQFEPSLLNLMADERAVRQISLNLLSNAVKFTPSGGEIRVRVGWTSGGGQYIS 415

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           + D G G++  E+   +  FGQ   + +   +GTGLGLP+ + +   + G   + S   +
Sbjct: 416 ICDNGPGISEEEMPLVLSAFGQGSVAIKSAEQGTGLGLPIVQGLTHLHGGLLRLKSKLRE 475

Query: 801 GTLIEIIFP 809
           GT+  +IFP
Sbjct: 476 GTVATVIFP 484


>gi|319957220|ref|YP_004168483.1| integral membrane sensor hybrid histidine kinase [Nitratifractor
           salsuginis DSM 16511]
 gi|319419624|gb|ADV46734.1| integral membrane sensor hybrid histidine kinase [Nitratifractor
           salsuginis DSM 16511]
          Length = 1054

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 78/241 (32%), Positives = 121/241 (50%), Gaps = 11/241 (4%)

Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
           +   + +  K  FLA +SHEIRTPL  I+GF++++KN    P       E+ + I+ S +
Sbjct: 371 ETIVEANKAKDLFLANMSHEIRTPLNGIVGFTQLLKNTPLSP----DQQEFISVIENSSD 426

Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695
            +L IVND+LD+SKI + K+ L     +  E   +A+      A EK I        +IP
Sbjct: 427 NLLSIVNDILDLSKINADKIELEQIAFNAIEKFEDAVESYGAKAAEKNIDFGLFVDPSIP 486

Query: 696 -RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT----SNEEVILRVRDTGVGMTN 750
             ++ D   + Q+ +N++SNAI FT S G + +    T     +  +   VRDTG+G+T 
Sbjct: 487 KTLVGDPTKISQVIVNLVSNAIKFTNSNGDVEVLIEKTNETDKDATIYFAVRDTGIGITE 546

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL--IEIIF 808
            +  K    F Q       +  GTGLGL ++  +V+   GK  I S P KG+     +  
Sbjct: 547 EQKAKIFGAFSQADAGTSRKYGGTGLGLAISSKLVEKMGGKLDIESEPGKGSTFFFTLTL 606

Query: 809 P 809
           P
Sbjct: 607 P 607


>gi|262190977|ref|ZP_06049189.1| phosphate regulon sensor protein phoR [Vibrio cholerae CT 5369-93]
 gi|262033148|gb|EEY51674.1| phosphate regulon sensor protein phoR [Vibrio cholerae CT 5369-93]
          Length = 433

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 75/402 (18%), Positives = 153/402 (38%), Gaps = 30/402 (7%)

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDT-RINKRKMEIEVMQLCSILEATSDGIAI 467
           ++           +                   R  ++++   + +  +  E+  D + +
Sbjct: 54  SAWLWDEKRLTPPSGTGNWESLFNGIYRLQQRHRKKRKELTNLIRRFRNGAESLPDAVVV 113

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
              EG I+  NR    L G+   D   +P +  L          ++  +   D    LE 
Sbjct: 114 FRSEGNIVWCNRLAQHLLGFRWPDDAGQPISNLLRTP------DFIKYLKKDDFTDPLEM 167

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
                +       L + I        + + + D+++ KQ +                + +
Sbjct: 168 ----RSPLNSDRMLELRIVPYTEGE-HLMVVRDVTQLKQLEG--------------MRRN 208

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           F A VSHE+RTP+T + G+ E+   +    L  P + +    +    N +  +VN LL +
Sbjct: 209 FFANVSHELRTPMTVLQGYLEM--TEDPDVLAGPMWSKAHGVMTEQLNRMNSLVNQLLTL 266

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707
           SKIE+  M    + V +   +          + E +  +      ++ ++LAD   ++  
Sbjct: 267 SKIEASPMVELDQVVDVPAMLEVLEKEAVSLSGEAQHKLHFEVDKSL-KVLADEDQLRSA 325

Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
             N++ NA+ +TP G QI +   + + +   L V D G G+    L +  + F ++  ++
Sbjct: 326 ISNLVYNAVKYTPPGAQIDVRW-YRTGKGACLEVEDKGEGIEPQHLHRLTERFYRVDKAR 384

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
                G+GLGL + K  +  +     I+S    G+    + P
Sbjct: 385 SRDTGGSGLGLAIVKHALAHHDTHLDIYSKVGVGSKFSFVLP 426


>gi|218256903|ref|ZP_03474391.1| hypothetical protein PRABACTJOHN_00043 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225891|gb|EEC98541.1| hypothetical protein PRABACTJOHN_00043 [Parabacteroides johnsonii
           DSM 18315]
          Length = 529

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 103/530 (19%), Positives = 198/530 (37%), Gaps = 71/530 (13%)

Query: 322 TPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
                 K PI   +Y   GNL   N +   L   K  D I I    +    A ++     
Sbjct: 21  LENIYQKLPIGIELYDGEGNLIDLNETDEQLFAIKRTDIIGINLFENPNFPADQIHRLKK 80

Query: 381 IKPVMLYRSDRTCIAASA-----RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
            + V          A          H         L ++       ++         +  
Sbjct: 81  GEEVAF----DCQYAFDKIKTNQYYHINPQQENTILYLSIKCLPLKDEDENIYGYIIMFS 136

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDG--------I----AIINREGI-------ILS 476
           ++ +      +      +L +++    DG        I      I+ E         +  
Sbjct: 137 DETEKYKKIEETNELFNKLKTVI---GDGDSLMWEYDIKEDKMHIDLELRDPAKPSKLKE 193

Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN-HYLTEILSLDLRQTLEKITLGSTKE 535
            N               RK F   +  +    +      +++  +++    +       E
Sbjct: 194 CN------------LTSRKDFYQLVHPDDHQRVLTEAFEKLIKGEIKGYTAQYRRLFRDE 241

Query: 536 EKLLSLRIIIKKLPFSSCYSLTM---HDIS-------EWKQEKNKLSHAKKI---AEKES 582
              +   +   K   +      +    DI+       + +  + +          A++ +
Sbjct: 242 YIWVKAFVQPYKYDENGKPLKILYYLTDITNEINIREKLRAAEKERHQKNIELAKAQESN 301

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
             KS FLA +SHEIRTPL AI+GFS ++ +             Y + I+++ +L+L ++N
Sbjct: 302 KLKSMFLANMSHEIRTPLNAIVGFSSILAD--MQEEDMDERHFYVDIINKNSDLLLQLIN 359

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL--AD 700
           D+LD SKIE+G  ++H +     E   E  ++  L   +    +  SF  ++P +   +D
Sbjct: 360 DILDFSKIEAGTFDIHLKKFDFKEICEEIYAVHALKIPDH---VCFSFNRDLPSVELNSD 416

Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760
            + + Q+  N L+NAI FT  G +I +      + ++ + V DTG+G++          F
Sbjct: 417 PKRLTQVISNFLTNAIKFTSDG-EIKLDYLLEKD-KIYVSVTDTGIGISEEACNNIFDRF 474

Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            ++   +    +GTGLGL ++K++++   GK  ++ST  KG+      PL
Sbjct: 475 VKLNTHK----QGTGLGLSISKSIIEKLGGKIGVYSTLGKGSTFWFTLPL 520


>gi|260776660|ref|ZP_05885555.1| phosphate regulon sensor protein phoR [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260607883|gb|EEX34148.1| phosphate regulon sensor protein phoR [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 432

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 78/413 (18%), Positives = 160/413 (38%), Gaps = 36/413 (8%)

Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
             RL    W+ +            +         NGI       R  ++++   + +  +
Sbjct: 50  QMRLSAWLWDEKR-------LTPPSGSGNWESLFNGIYRLQQRQRKKRKELTNLIRRFRN 102

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
             E+  D + +   EG I+  N+    L G+   D   +P +  +         +     
Sbjct: 103 GAESLPDAVVVFRSEGNIVWCNKLAQHLLGFRWPDDSGQPISNLIRTPDFIKYLNKQDFS 162

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKK 576
             L++R  L    +          L + I        + + + D+S+ KQ +        
Sbjct: 163 EPLEMRSPLNVERM----------LELRIVPYTEGE-HLMVVRDVSQLKQLEG------- 204

Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
                   + +F A VSHE+RTP+T + G+ E+   +    +  P + +    +    N 
Sbjct: 205 -------MRRNFFANVSHELRTPMTVLQGYLEM--TEDPDMVVGPMWTKAHGVMTEQLNR 255

Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696
           +  +VN LL +SKIE+  M+   + V++   +          + +++  +     N++ R
Sbjct: 256 MNSLVNQLLTLSKIEAAPMHELEDVVNVPAMLDVLEKEAASLSGDQQHKLNFDIDNSL-R 314

Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKA 756
           +L D   ++    N++ NA+ +TP+G  + +    T+     L V D G G+    L + 
Sbjct: 315 VLGDEDQLRSAISNLVYNAVKYTPAGADVRVRWYQTAQG-ACLEVEDGGEGIEPQHLHRL 373

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            + F ++  ++     G+GLGL + K  +  +     I S    G+    + P
Sbjct: 374 TERFYRVDKARSRDTGGSGLGLAIVKHALTHHDSHLEIQSEVGVGSKFSFVLP 426


>gi|270263998|ref|ZP_06192266.1| hypothetical protein SOD_f02120 [Serratia odorifera 4Rx13]
 gi|270042191|gb|EFA15287.1| hypothetical protein SOD_f02120 [Serratia odorifera 4Rx13]
          Length = 908

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 90/335 (26%), Positives = 147/335 (43%), Gaps = 17/335 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           LF Y +   +  P    +               L   +   +             +++ +
Sbjct: 192 LFAYRLMRDVTGPIRNMVNTVDR-----IRRGQLDSRVEGFMLGELHMLKNGINSMAMSL 246

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 247 TAYHEEMQQNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTP 306

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+  +              +Y   I+RS N +L I+ND+LD SK+E+GK+ L  
Sbjct: 307 LNGVIGFTRQMLKTEMSVT----QTDYLQTIERSANNLLTIINDVLDFSKLEAGKLVLEH 362

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P SL E + E I L+   A+EK + +     N++P  ++ D   ++QI  N+L NAI F
Sbjct: 363 IPFSLRETLDEVIVLLAPSAHEKGLELTLDVHNDVPEQVIGDSLRLQQIITNLLGNAIKF 422

Query: 719 TPSGGQ-IIISTTHTSNEEVILRVR--DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T +G   I +        +V L V+  DTG+G++  +  +  + F Q   S   R  GTG
Sbjct: 423 TETGNIDIRVELRGLQERQVELEVQIHDTGIGISERQQSQLFQAFRQADASISRRHGGTG 482

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           LGL + + +V    G     S   +G+       L
Sbjct: 483 LGLVITQKLVKEMGGDICFHSQLNRGSTFWFHITL 517


>gi|227822277|ref|YP_002826248.1| two component sensor kinase [Sinorhizobium fredii NGR234]
 gi|227341277|gb|ACP25495.1| two component sensor kinase [Sinorhizobium fredii NGR234]
          Length = 511

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 98/249 (39%), Positives = 154/249 (61%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I+E +  K+    A++ AE+ +  KS FLA +SHE+RTPL AI+GFSEV+  +  GPL N
Sbjct: 238 IAELEVAKSMSDEARRRAEEANLAKSRFLASMSHELRTPLNAILGFSEVMSTEVLGPLNN 297

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
           P Y EY   I RSG  +L+++N++LD+S+IE+G+  L+ E V+L E   + I +VQL A 
Sbjct: 298 PTYKEYTVDIHRSGEHLLNLINEILDLSRIEAGRYELNEEAVNLVEIAEDCIGMVQLRAR 357

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
            K I I   F   +P +  D ++++Q+ALN+LSNA+ FTP+GG+I +    T+     + 
Sbjct: 358 GKNITIEPQFEQAMPSVWIDEKAMRQVALNLLSNAVKFTPAGGEITVKVGWTAGGGQYIS 417

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           ++D G G+   E+   +  FGQ   + +   +GTGLGLP+ +A++  + G+F + S   +
Sbjct: 418 IKDNGPGIPEEEIPIVLSAFGQGSIAIKSAEQGTGLGLPIVQAILAKHNGQFILRSKLRE 477

Query: 801 GTLIEIIFP 809
           GT    I P
Sbjct: 478 GTEAIAILP 486


>gi|113954151|ref|YP_731417.1| sensory box histidine kinase [Synechococcus sp. CC9311]
 gi|113881502|gb|ABI46460.1| sensory box histidine kinase [Synechococcus sp. CC9311]
          Length = 693

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 75/395 (18%), Positives = 174/395 (44%), Gaps = 41/395 (10%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            +++   ++  S++   +DG  +++ +G I+  N    +LF +   ++  + F   +   
Sbjct: 295 EELQAAQVKQASLIATMADGAVLLDEKGQIVLANPTARRLFRWEGRNLEGQDFLNSIPDL 354

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISE 563
             + ++  L  +L+        + ++G         L+ + +    +    ++TM D++ 
Sbjct: 355 LANELHEPLDGVLNQGRDSNELRSSIGEPPRTLRFVLQAVREPSGENLKGIAVTMQDLTR 414

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
                           + ++ +S F++ VSHE+RTPL  I  + E +  +    L +   
Sbjct: 415 --------------EVELNAAQSRFISNVSHELRTPLFNIKSYVETLY-EMGDQLSDTDK 459

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            E+    +   + +  +VND+LD+S++ES   ++ F  + L   + + +   QL A++K+
Sbjct: 460 QEFLGIANAETDRLTRLVNDVLDLSRLES-HPSVQFTELDLRPGLEQTLRSYQLNASDKQ 518

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-------- 735
           + +    + ++P IL +   + Q+  N++ NA+ F+ SG +I+I      +         
Sbjct: 519 VELDLEASIDLPDILGNWDLILQVLDNLVGNALKFSRSGSRIVIRAYAWPDSCWMGPLPE 578

Query: 736 ---------------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
                          ++ + V DTG G++  + ++  + F ++ N+      GTGLGL +
Sbjct: 579 DSLQAPQCEMVSPLPKLRVEVSDTGYGISEDKQQRIFERFYRVENAVHTEV-GTGLGLSI 637

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            + +++ +     + S P  GT      PL  +  
Sbjct: 638 VRGILEKHSSVIRMASEPDVGTTFWFDLPLAQSDQ 672


>gi|238761196|ref|ZP_04622173.1| Histidine kinase [Yersinia kristensenii ATCC 33638]
 gi|238761449|ref|ZP_04622425.1| Histidine kinase [Yersinia kristensenii ATCC 33638]
 gi|238700423|gb|EEP93164.1| Histidine kinase [Yersinia kristensenii ATCC 33638]
 gi|238700676|gb|EEP93416.1| Histidine kinase [Yersinia kristensenii ATCC 33638]
          Length = 966

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 89/391 (22%), Positives = 169/391 (43%), Gaps = 19/391 (4%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           R   + ++  + Q  +I+ A    + I      +   N   +      + D+L +     
Sbjct: 280 RRQAKLLQARLRQQETIINALPFAVFIRTTNDELAVYNSHFANAHQDKLNDMLNQNTEQA 339

Query: 501 LEQNTPSVMNH---YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-YSL 556
               T  +      Y   +L   L Q ++          +L  + + I  L  +      
Sbjct: 340 QWPMTNPLNREIDKYCRYVLQDRLPQMVDLSIEI---NGELRDIFLWIIPLDNAERSLLG 396

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
              DIS+ K  + +L  A+  AE  +  KS FLA +SHE+RTP+  I+G  E ++ +   
Sbjct: 397 GWLDISQRKTVERQLEAARVEAESANRTKSTFLATISHELRTPMYVIMGLLE-LELRSDQ 455

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
           P+           +  S   ++ +++D++D +KIE+G++++H   V   + +   + + Q
Sbjct: 456 PVD----KNTLATVSNSAQSLMLLLDDIIDSAKIEAGQLSVHPAEVDFRQEIGRMLLIYQ 511

Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ---IIISTTHT 732
             A+E+ + +     + IP  ++ D+  ++Q+  N+L NA+ FT  GG    I    T  
Sbjct: 512 PIADERHLKLSRWLDDQIPDLVIVDMLRMRQVMGNLLGNALKFTEQGGVSVDITWEATDE 571

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
               + + + DTG+G++        +PF Q    +  R  G+GLGL +   ++    G+ 
Sbjct: 572 KQGVMNIDITDTGIGISPAAQATLFQPFSQANEGKSPRFGGSGLGLWICHQLIHKMGGEI 631

Query: 793 YIFSTPAKGTLIEIIFPLY---DTSHPHDCI 820
            + S   KGT + I  PL     +  P D I
Sbjct: 632 TLESQLGKGTSLFITLPLEIATTSDLPPDSI 662


>gi|170741055|ref|YP_001769710.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
 gi|168195329|gb|ACA17276.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
          Length = 1057

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 102/765 (13%), Positives = 220/765 (28%), Gaps = 69/765 (9%)

Query: 94  YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIE 153
               +S    +  G     ++     D +    +    H G L + +       + + +E
Sbjct: 181 RFLYLSRGFERMTGVTTEAVL----TDPAAAYDLILPEHRGRLAEAERAAIRDLSDFDVE 236

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGF-GIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212
                    L    I S  R  +    + G++  +          +  + +     E  +
Sbjct: 237 APMRRPDGTLVQTRIISAPRLVADVVVWDGLLLDDTARKRTEERLRESEARLRLATEAAE 296

Query: 213 GHSSVEKEKYDIFSQQS---------PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
                     D     +         P   + M +  + L      +D         L  
Sbjct: 297 VGLWDVDVVNDSLFWPARVKAMFGISPDVPVSMADYYAGLHPED--RDVTSAAFAAALDP 354

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
           ++ +    +                 G            L      +     +E    + 
Sbjct: 355 TKRALYDVEYRTVGREDGVVRWVAAKGRGVFEGGRCVRVLGTAIDVTARKQAEEALRASE 414

Query: 324 ETVDKC----PIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
           E         P   +     G  ++ N         +  D ++  G  + +    +    
Sbjct: 415 EQFRVLSQVLPNFVWATDSAGTAYWFNDRVYAYAGLRPGD-LDGDGWHAVVHPDDRSRVA 473

Query: 379 NAIKPV-----------MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
                             L R+D       AR   +  +    +          +     
Sbjct: 474 EEWHAAVAVRSGYQSEYRLRRADGVYRWFLARAQPVLASDGKVVRWVGTS-TDIDDQKRM 532

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
           M       E ++ R+ +R  E +      +   + D + ++  +GI  + N A   + G+
Sbjct: 533 MTDLVRFNEVLEQRVAERTAEHDR-----VWRNSRDLLVVVGADGIFRAVNPAWQAILGH 587

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
              +++   F  F+  +        L + +S D     E          +L+S R  +  
Sbjct: 588 SPSEVVGHSFLEFIWPDDAEATLAALEQAVSADDLTDFENRYRHKDGTPRLISWRTSV-- 645

Query: 548 LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES--SHKSDFLARVSHEIRTPLTAIIG 605
              S        D++  K++   L  A++   +             V+H+    LT I  
Sbjct: 646 --ESDLVYAYGRDVTAEKRQAEALRQAEEALRQSQKLEAVGQLTGGVAHDFNNLLTIIRS 703

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
             + ++      L   R + Y   +  + +    +   LL  ++ ++    L  E + + 
Sbjct: 704 SVDFLRR---PDLAEERRVRYLTAVSDTVDRAAKLTGQLLAFARRQA----LKPETLDVG 756

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725
             +     L+       RI + T   ++   +  D+   +   +N+  NA       G +
Sbjct: 757 ARLRAVAELLDT-VTGARIRVMTDLPDHPCFVRVDVSQFETALVNMAVNARDAMGGEGTL 815

Query: 726 IISTTH------------TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
            +                 +   V + + DTG G+    L +  +PF          G+G
Sbjct: 816 TLRLECGVSLPPIRGHAGAAGRFVAVSLSDTGSGIAPAVLSRVFEPFFTTK----EIGKG 871

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
           TGLGL      V  + G   + S P +GT   +  P  +   P +
Sbjct: 872 TGLGLSQVFGFVKQSGGDVDVASVPGRGTTFTLYLPEVEPVAPAE 916



 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 46/518 (8%), Positives = 127/518 (24%), Gaps = 31/518 (5%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
                    ++   + +G+     +G R  ++   +  D    I   L  + TW     L
Sbjct: 44  GPELGFLY-NDAYAEILGDKHPAALGRRFHEIWPEIWPDIAPLIDKALAGEATWSENMLL 102

Query: 150 -WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                G +       +  P+       +G   F             A  +  + +   + 
Sbjct: 103 TMNRRGYDEQTWFTFSYSPVRDEQGRVAGM--FCACTETTGQVRAEASLREAEARLRAVT 160

Query: 209 EIKKGHS------SVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
           +   G +        +               +      + LT+  A  D +L   +  L 
Sbjct: 161 DHLPGGAVYQIATPRDGSSRRFLYLSRGFERMTGVTTEAVLTDPAAAYDLILPEHRGRLA 220

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFG----TLQNNSKESFEYLSHRNHPSLSAYFDEG 318
            +E +++ +  DF      +            +      +   +       +     +E 
Sbjct: 221 EAERAAIRDLSDFDVEAPMRRPDGTLVQTRIISAPRLVADVVVWDGLLLDDTARKRTEER 280

Query: 319 ENLTPETVDKCPIP--FFVYSHGNL---FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
              +   +          ++    +    +       +          +   ++      
Sbjct: 281 LRESEARLRLATEAAEVGLWDVDVVNDSLFWPARVKAMFGISPD----VPVSMADYYAGL 336

Query: 374 KLSDNNAIKPVMLYRSDRTCIA-ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
              D +          D T  A       T+         +              +   G
Sbjct: 337 HPEDRDVTSAAFAAALDPTKRALYDVEYRTVGREDGVVRWVAAKGRGVFEGGRC-VRVLG 395

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
              +    +  +  +     Q   + +   + +   +  G     N  V    G    D+
Sbjct: 396 TAIDVTARKQAEEALRASEEQFRVLSQVLPNFVWATDSAGTAYWFNDRVYAYAGLRPGDL 455

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
               +   +  +  S +       ++  +R   +        +          + +  S 
Sbjct: 456 DGDGWHAVVHPDDRSRVAEEWHAAVA--VRSGYQSEYRLRRADGVYRWFLARAQPVLASD 513

Query: 553 C----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
                +  T  DI + K+    L    ++ E+  + ++
Sbjct: 514 GKVVRWVGTSTDIDDQKRMMTDLVRFNEVLEQRVAERT 551


>gi|85059559|ref|YP_455261.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Sodalis glossinidius str. 'morsitans']
 gi|84780079|dbj|BAE74856.1| capsular synthesis sensor protein RcsC [Sodalis glossinidius str.
           'morsitans']
          Length = 958

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 93/370 (25%), Positives = 161/370 (43%), Gaps = 29/370 (7%)

Query: 446 KMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           ++E        I+ +   GI+I+   +G  L +N            +  ++  T  +   
Sbjct: 354 QLEENEQFNRKIVASAPVGISILRISDGTNLISNELAHNYLSMLTHEDRQR-ITHIICGQ 412

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564
             + ++                      T     L +  +  +    +     + D+S  
Sbjct: 413 QVNFVD--------------------VITSNNTNLQISFVHSRYRNQNVAICVLVDVSAR 452

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
            + +  L     +AE+ +  KS FLA VSHE+RTPL  IIG  + +   +  P G  R +
Sbjct: 453 VRMEESLQDMAAVAEQANQAKSMFLATVSHELRTPLYGIIGNLD-LLKTKALPDGVDRLV 511

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
              +    S  L+L+I++D+LD SKIES ++ +  +  S  E VS  +        +KR+
Sbjct: 512 MAMS---NSSALLLNIISDILDFSKIESEQLKIEPKEYSPRETVSYIVGSYLSLVVKKRL 568

Query: 685 LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
            +      ++P  +  D   ++Q+  N+L+NAI FT SG  I+++        ++  VRD
Sbjct: 569 GLYCFIDPDVPDSLRGDPVRLQQVLSNLLNNAIKFTRSG-NIVVTVYCRD-GYLLFSVRD 626

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TGVGM   E+ +   PF Q+    Q   +GTGLGL + + +V+   G   + S    G+ 
Sbjct: 627 TGVGMQTREVMQLFDPFVQLGEGGQRPIQGTGLGLAICEKLVNLMDGDIAVESERGLGSR 686

Query: 804 IEIIFPLYDT 813
             I  PLY  
Sbjct: 687 FTIRLPLYQA 696


>gi|146277153|ref|YP_001167312.1| PAS/PAC sensor signal transduction histidine kinase [Rhodobacter
           sphaeroides ATCC 17025]
 gi|145555394|gb|ABP70007.1| PAS/PAC sensor signal transduction histidine kinase [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 346

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 78/367 (21%), Positives = 146/367 (39%), Gaps = 29/367 (7%)

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
           ++      +LE     + +I  +  I S N    +LFG             ++       
Sbjct: 1   MQEQDAAQLLEGVPLPLVLIGPDERIRSANAPAQRLFGATSVA------RHYVMAMRQPA 54

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568
           +   +   L LD       I  G ++E     + +    +    C      DI+E +Q  
Sbjct: 55  LLDAIEGALRLDRPGRARHIITGPSREVTY-RVTVTPVPVAGERCALCAFEDITEQEQM- 112

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
                         + + DF+A VSHE+RTPLTA++GF E ++              +  
Sbjct: 113 -------------GAIRRDFVANVSHELRTPLTALLGFIETLQG--AAREDPAARARFLA 157

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            + R    +  +V DLL +S++E+ +       V +   + +A++ ++  A    + I  
Sbjct: 158 IMAREAGRMNRLVQDLLSLSRVEAEERVRPVTQVDVSAVIGQAVAALRPMAEAAGVAIER 217

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE------EVILRVR 742
           +       +  D   + Q+  N++ NA+ +  SG  + +  T   +        V + V 
Sbjct: 218 TGETGHLPLPGDADQLTQVFHNLIENAVKYGASGKLVTVEVTRDPDGLARLGPAVRIEVV 277

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G G+    L +  + F ++ N +     GTGLGL + K +V+ + G+F I S   KG+
Sbjct: 278 DRGEGIDAIHLPRLTERFYRVDNHRSREKGGTGLGLAIVKHIVNRHRGRFRIESELGKGS 337

Query: 803 LIEIIFP 809
              +  P
Sbjct: 338 RFIVTLP 344


>gi|115523391|ref|YP_780302.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisA53]
 gi|115517338|gb|ABJ05322.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisA53]
          Length = 878

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 88/380 (23%), Positives = 161/380 (42%), Gaps = 24/380 (6%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
           +RK EI  + L       SD +   + +G ++S      ++   P+  +        L  
Sbjct: 234 ERKTEIISLLLKDFQANASDWLWQTDVDGRLVSIPERFVEVSQLPLALLRGAAIADVLAM 293

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMH 559
            +P       T    +  R+ L  + +      K     +  K +               
Sbjct: 294 LSPDDRAAVATVTALMAKREPLHDVAVHVVVAGKPRLWSMTAKPVLDPDGRFAGYRGVGR 353

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           D++E  +           AE E+  KS+FLA +SHEIRTP+  ++G + V+   +     
Sbjct: 354 DVTERWRA--------DQAEAENRAKSEFLAMMSHEIRTPMNGVLGLANVLLETKL---- 401

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
           +P        I  SG+ +  I+ND+LD+SK+E+G+        S    +    +++   A
Sbjct: 402 DPEQHHAVATIRDSGDNLQRILNDILDLSKLEAGRFQFEMVDFSPHTLIGAVSAVIGPMA 461

Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-- 736
             K + +    A ++P  +  D   ++Q+ LN+ +NA+ FT  G +I IS   +  ++  
Sbjct: 462 KNKGLSVEIDVAKDLPETLTGDAARIRQVLLNLAANAVKFTERG-RIAISVLCSDRQDDS 520

Query: 737 --VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
             V  RV DTG+G+ +  +      F Q   +   R  GTGLGL +++ +V+   G+  +
Sbjct: 521 VSVEWRVVDTGIGIADDRVGSLFSDFAQADVTINRRFGGTGLGLAISRRIVEQMGGEIGV 580

Query: 795 FSTPAKGTL--IEIIFPLYD 812
            S    G+     +  P+ D
Sbjct: 581 SSVHGDGSTFYFRLRLPISD 600



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 41/375 (10%), Positives = 91/375 (24%), Gaps = 12/375 (3%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG---DLLKRQNT 142
            W  D  G L  I E   +        + G  + DV  +L  D    +     L+ ++  
Sbjct: 255 LWQTDVDGRLVSIPERFVEVSQLPLALLRGAAIADVLAMLSPDDRAAVATVTALMAKREP 314

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
            +       + G    +   + A P+   +  F+G+RG G                    
Sbjct: 315 LHDVAVHVVVAGKP-RLW-SMTAKPVLDPDGRFAGYRGVG--RDVTERWRADQAEAENRA 370

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
           K   L  +               +       L  +   +  T   +  +          L
Sbjct: 371 KSEFLA-MMSHEIRTPMNGVLGLANVLLETKLDPEQHHAVATIRDSGDNLQRILNDILDL 429

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
           +  E+   + E                      +K     +        +   D      
Sbjct: 430 SKLEAGRFQFEMVDFSPHTLIGAVSAVIGPMAKNKGLSVEIDVAKDLPETLTGDAARIR- 488

Query: 323 PETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVD--DIEIAGGLSTLLDAPKLSDNNA 380
              ++           G +  +           SV+   ++   G++        SD   
Sbjct: 489 QVLLNLAANAVKFTERGRIAISVLCSDRQDDSVSVEWRVVDTGIGIADDRVGSLFSDFAQ 548

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI-EPEDVD 439
               +  R   T +  +     ++         +         F   +P +     +   
Sbjct: 549 ADVTINRRFGGTGLGLAISRRIVEQMGGEIGVSSVHGDGSTFYFRLRLPISDRKISDHRL 608

Query: 440 TRINKRKMEIEVMQL 454
            R+    + + +  L
Sbjct: 609 DRVGADDLRMRIAML 623


>gi|283852919|ref|ZP_06370179.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfovibrio sp. FW1012B]
 gi|283571677|gb|EFC19677.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfovibrio sp. FW1012B]
          Length = 1137

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 91/588 (15%), Positives = 196/588 (33%), Gaps = 51/588 (8%)

Query: 241 SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF 300
           + L+     +D  L  E   +   E   L      H++ L++   +   G +        
Sbjct: 430 APLSWSLDVEDAGLLREP-GVRVGETEILDADNTSHSVILHRAVYESAKGEIAGLVGV-- 486

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDD 359
                      +      E       +   +  F +   G     NP+ L +   + +D 
Sbjct: 487 -LYDVSELKRAAEKLRLAEEKYRGIFENSALGIFRMTPDGRAVDVNPALLAMLGVEDLDT 545

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
           +    G   LLD    +       +     +   +    R           +        
Sbjct: 546 LAERRG--DLLDVLFSNRARFEALIGSAVDEDATVKFETRFVR---PDARLVTANINMRL 600

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
            A++        G+  +       +R +      L  +L+     ++  ++    +  NR
Sbjct: 601 VADRDGYLAYVEGVVEDVTKRHEAERALRESQEMLRLVLDNIPQLVSWKDKALRYIGANR 660

Query: 480 AVSKLFGY-PVEDILRK-PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
           A  + FG+  ++D++ +  + + L Q     +     +++  +  +T+            
Sbjct: 661 AFIEFFGFADLDDLMGRDDYALPLRQEDMDAVRATDVDVMRNN--RTVSGELAARNVRGA 718

Query: 538 LLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
            + L I    L       +    T  D+++    + +L  ++K+              ++
Sbjct: 719 DVLLEIKKVPLHDDRGAVVGVLSTAEDVTQKVSLERQLLQSQKM-----EAIGTLAGGIA 773

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI-ES 652
           H+    LT+II  +E+          +    +    + R+G     +V  +L  ++  ++
Sbjct: 774 HDFNNILTSIINSAELAL---MDLPPDEPIEDDMRRVLRAGERGSRLVKQILSFTRPSQA 830

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712
           G     F  +++ + VSEA  L++       I I            AD   + QI +N+ 
Sbjct: 831 G-----FAAINVVDVVSEAAGLIKASMPR-NIKIVVDTPETAVTCRADPTQLHQIVMNLC 884

Query: 713 SNAIHFTPS-GGQIIISTT-------------HTSNEEVILRVRDTGVGMTNYELEKAMK 758
           +NA       GG + ++                 +     L + DTG G+    ++K   
Sbjct: 885 TNAFQAMRETGGVLTLALAEDELDETLAGIVGVRAGRHARLSIVDTGPGIPPEIMDKIFD 944

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           PF         +GEGTGLGL + + +V  + G   + S P   T  ++
Sbjct: 945 PFFTTKQ----KGEGTGLGLAVVRGIVKGHRGAVRVVSQPGSRTGFDV 988



 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/324 (9%), Positives = 87/324 (26%), Gaps = 20/324 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN---HIGDLLKRQNT 142
            + +   G   +++  L   +G      +  R  D+ D+L  +       IG  +    T
Sbjct: 518 IFRMTPDGRAVDVNPALLAMLGVEDLDTLAERRGDLLDVLFSNRARFEALIGSAVDEDAT 577

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
              +T     +     V  ++    +  R+   +   G  +V      ++     +   +
Sbjct: 578 VKFETRFVRPDARL--VTANINMRLVADRDGYLAYVEG--VVEDVTKRHEAERALRESQE 633

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSP----PPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
               + +      S + +                   + + +         + + +   +
Sbjct: 634 MLRLVLDNIPQLVSWKDKALRYIGANRAFIEFFGFADLDDLMGRDDYALPLRQEDMDAVR 693

Query: 259 YPLLTSEE--SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
              +       ++  +     +       +     L ++       LS     +     +
Sbjct: 694 ATDVDVMRNNRTVSGELAARNVRGADVLLEIKKVPLHDDRGAVVGVLSTAEDVTQKVSLE 753

Query: 317 EGENLTP--ETVDKCPIPFFVYSHGNLF--YANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                +   E +         +   N+     N + L L      + IE    +  +L A
Sbjct: 754 RQLLQSQKMEAIGTLAGGIA-HDFNNILTSIINSAELALMDLPPDEPIE--DDMRRVLRA 810

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAA 396
            +       + +   R  +   AA
Sbjct: 811 GERGSRLVKQILSFTRPSQAGFAA 834


>gi|170725193|ref|YP_001759219.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
 gi|169810540|gb|ACA85124.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
          Length = 1240

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 71/251 (28%), Positives = 124/251 (49%), Gaps = 10/251 (3%)

Query: 563 EWKQEKN--KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           E K  +   +L  + K AE  S  KS+FLA +SHE+RTP+ AIIG S+++         +
Sbjct: 461 EQKVSERTSELVESHKRAEIASKAKSNFLAHMSHEVRTPMNAIIGLSQLMLKTSL----D 516

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
            R  ++   +  S +++L+ +ND+LD SKIE+ K+ L      L + +    ++    A 
Sbjct: 517 KRQRDFMEKVLSSSDVLLNTINDVLDYSKIEANKLTLDEFQFDLRDVLRRVTNISAYKAQ 576

Query: 681 EKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV-- 737
            K + +       +P   + D   + QI +N+ SNA+ FT  G  +I         ++  
Sbjct: 577 SKGVELLLDVDEKVPFHWIGDPTRLGQILINLASNAVKFTEKGEVVIRVKLLEQQGQLST 636

Query: 738 -ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
               + DTG+G+ ++ L +   PF QI +S   +  GTGLGL + + + +   G+ ++ S
Sbjct: 637 LRFSIIDTGIGIDHHRLNQLFSPFTQIDSSITRKYGGTGLGLAICRQLTELMNGRIWVDS 696

Query: 797 TPAKGTLIEII 807
              KG+     
Sbjct: 697 EINKGSQFHFT 707


>gi|86749269|ref|YP_485765.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris
           HaA2]
 gi|86572297|gb|ABD06854.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris
           HaA2]
          Length = 655

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 93/539 (17%), Positives = 192/539 (35%), Gaps = 57/539 (10%)

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYK 355
           +E+ E   HR      ++ +   +L    V   P   F V  H  +   NP+   L  + 
Sbjct: 9   RETREVHPHRRDDETMSFDNASASLLRALVHAAPDGIFLVDRHQRIALFNPACEGLFGWS 68

Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
           + + +         L             V   R D T +                     
Sbjct: 69  AREALGEDV---ATLIPDWRQQPALRSQVQARRRDGTTLT------------------VT 107

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
           +    +     ++     E +  +    +R +     ++ ++++   +G+ + +R G I 
Sbjct: 108 LATAASAADAASIVATVRERDITEQSRAERAIREADARVATLIQTVDNGVILTDRLGRIK 167

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGST 533
           + N A  +LFGY  ++++ +  ++         +   L      D    +   +   G  
Sbjct: 168 TFNLACRRLFGYQADEVIDRHISMLAPAANADAIQSLLRRGNQADEHGRIGTVRGMTGLR 227

Query: 534 KEEKLLSLRIIIKKL--PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
           ++     + +            + + + D+++ K  + +L+ A+K+              
Sbjct: 228 RDGGTFPMELSAGTTVQDGEPVFVVAIQDLTDRKHTEERLAQAQKM-----EIVGQLSGG 282

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           ++H+    LT I+G +E + +Q             A  I R+G    ++   LL  S+  
Sbjct: 283 IAHDFNNLLTVIVGNAEFLADQL---KARQDLRGLACEISRAGQRGAELTQRLLAFSR-- 337

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
             +  L    V  +E VS    L++     + I+I  +F   +    AD   ++   LN+
Sbjct: 338 --RQTLKPVAVDCNELVSSMHDLLR-RTLREDIVIDIAFGAELCAAFADPAQLESAILNL 394

Query: 712 LSNAIHFTPSGGQIIISTT--------------HTSNEEVILRVRDTGVGMTNYELEKAM 757
             NA      GG++ I+T                   + V++ + D G GM+   L++  
Sbjct: 395 SLNAQDAMLGGGRLSITTANVTLDASYQSLNQDVRPGDYVLIAITDNGSGMSKEVLDRVF 454

Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           +PF          G+G+GLGL +    V  + G   ++S P  GT + +  P      P
Sbjct: 455 EPFYTTK----EVGKGSGLGLSMVYGFVKQSNGHVSLYSEPGLGTTVRLYLPAVAAGRP 509



 Score = 46.9 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 29/267 (10%), Positives = 57/267 (21%), Gaps = 22/267 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN------- 141
            D  G +K  +    +  G  A ++I   +  ++   + D    I  LL+R N       
Sbjct: 160 TDRLGRIKTFNLACRRLFGYQADEVIDRHISMLAPAANAD---AIQSLLRRGNQADEHGR 216

Query: 142 --TWYGKTTLWPIEGTNLYVPIDLAA-LPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
             T  G T L    GT    P++L+A   +      F        +              
Sbjct: 217 IGTVRGMTGLRRDGGT---FPMELSAGTTVQDGEPVF-----VVAIQDLTDRKHTEERLA 268

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
           +  K                     I              +          +      E 
Sbjct: 269 QAQKMEIVGQLSGGIAHDFNNLLTVIVGNAEFLADQLKARQDLRGLACEISRAGQRGAEL 328

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
              L +       +      N    +                         + +      
Sbjct: 329 TQRLLAFSRRQTLKPVAVDCNELVSSMHDLLRRTLREDIVIDIAFGAELCAAFADPAQLE 388

Query: 319 ENLTPETVDKCPIPFFVYSHGNLFYAN 345
             +   ++             ++  AN
Sbjct: 389 SAILNLSL-NAQDAMLGGGRLSITTAN 414



 Score = 41.9 bits (97), Expect = 0.48,   Method: Composition-based stats.
 Identities = 26/315 (8%), Positives = 69/315 (21%), Gaps = 28/315 (8%)

Query: 47  DSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVR-FTWNIDAHGYLKEISEELPKT 105
            +  +             T   D+ +  +   +        + +D H  +   +      
Sbjct: 5   STQCRETREVHPHRRDDETMSFDNASASLLRALVHAAPDGIFLVDRHQRIALFNPACEGL 64

Query: 106 IGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAA 165
            G  A + +G  +  +       P        +R++   G T    +             
Sbjct: 65  FGWSAREALGEDVATLIPDWRQQPALRSQVQARRRD---GTTLTVTLATAASAADAASIV 121

Query: 166 LPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF 225
             +                      +      +  D + + L +       +      I 
Sbjct: 122 ATVRE--------------RDITEQSRAERAIREADARVATLIQTVDNGVILTDRLGRIK 167

Query: 226 SQQSP------PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE--DFHT 277
           +               + ++  S+    A+ D +    +      E   +          
Sbjct: 168 TFNLACRRLFGYQADEVIDRHISMLAPAANADAIQSLLRRGNQADEHGRIGTVRGMTGLR 227

Query: 278 INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY- 336
            +   +  +   GT   + +  F                  +    E V +         
Sbjct: 228 RDGGTFPMELSAGTTVQDGEPVFVVAIQDLTDRKHTEERLAQAQKMEIVGQLSGGIAHDF 287

Query: 337 -SHGNLFYANPSFLL 350
            +   +   N  FL 
Sbjct: 288 NNLLTVIVGNAEFLA 302


>gi|294664051|ref|ZP_06729455.1| capsular synthesis regulatory two-component sensor kinase and
           response regulator hybrid transcription regulator
           protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
 gi|292606178|gb|EFF49425.1| capsular synthesis regulatory two-component sensor kinase and
           response regulator hybrid transcription regulator
           protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
          Length = 1092

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 118/642 (18%), Positives = 208/642 (32%), Gaps = 36/642 (5%)

Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA 248
            D D  A   R+ +  S    I    + V  E +      +P       + V  +     
Sbjct: 125 ADTDRLATALRVVRDISAASLIDARKTGVTLEGFLY----TPDGSFLAASPVIKMDALRD 180

Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
            +D  ++      +   E  +         N     +       Q +  +    + H   
Sbjct: 181 ARDHGVEDFIRKRIAGVEHLVAAIPPHTLRNDRLLWRPADASDGQTSISQLVVPMFHDGR 240

Query: 309 ----PSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364
                +LS    +          + P  F +   GN    +P    L      D +    
Sbjct: 241 RQFTIALSLPDRQFMRFFLREEARRPGFFLLSQDGNENLGDP----LRDADEADLLAKIR 296

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
             +   D          +    +   R        ++   W                   
Sbjct: 297 AHAVQFDQVASEPVTLYRGGTFFVVQRISGPDWISVYAYSWGDVLGNLQHEFVTGALVCL 356

Query: 425 PENMPQNGIEP----EDVDTRINKRKMEIEVMQL-CSILEATSDGIAIINRE-GIILSTN 478
                                +N  +  IE      +I++    GI I   E   ++  N
Sbjct: 357 LALGLMWATVIYFDLRVTKPLLNSAEKLIEAEHFSEAIIDTLPVGIGIYAPETDSVVLEN 416

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
               ++ G+  +                 V+     E +       +E     +  +   
Sbjct: 417 GVAKRMLGHGHDS----------ADFYRHVIRERTAEAVPGTHHSFIEVQWDIAEGQSSY 466

Query: 539 LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
           + +     +        L + DI+E K  +  L  AK+ A++ +  KS FLA VSHEIRT
Sbjct: 467 IGVASSQTRFGGRPVILLGLVDINEHKANEMLLIQAKQTADEANRAKSIFLAIVSHEIRT 526

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
           PL   +G  E++     G        E+ + I RS + +L +VNDLLD +K+E+  + ++
Sbjct: 527 PLHGAMGHLELLARSPLGF----EQAEWVDMIRRSFDALLSLVNDLLDSTKLEANALKIN 582

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIH 717
             P+S +E              +  +        ++   +  D + + QI  N+L NA+ 
Sbjct: 583 PMPMSPNEVAERCARSFGASILQNDVAFYCMTDPDLDGVVEGDDQRLAQILQNLLGNAVK 642

Query: 718 FTPSGGQIIISTTHTSNE---EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           FT  G  +I S               V DTG+G+         KP  Q  +S   R  GT
Sbjct: 643 FTERGSIMISSRCLKQQGDTIWARFEVADTGIGIPASMQSAIFKPLAQADDSISRRFGGT 702

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           GLGL L + +     G+  + S P KG++  +  P    + P
Sbjct: 703 GLGLFLCRNLSRLMGGRISVSSEPGKGSVFRVDLPFKRNARP 744


>gi|172057192|ref|YP_001813652.1| histidine kinase [Exiguobacterium sibiricum 255-15]
 gi|171989713|gb|ACB60635.1| histidine kinase [Exiguobacterium sibiricum 255-15]
          Length = 546

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 103/561 (18%), Positives = 211/561 (37%), Gaps = 49/561 (8%)

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
                      +   + T +Q  G L  +  E    L HRN    +      E+     +
Sbjct: 13  RLKTGPFPLSEVKATETTDQQRIGQLTQDLVEVEHKLKHRNEMMEALATQNVESACETLL 72

Query: 327 DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
            K  +       G +       L     + V+DIE        L    L   + ++   +
Sbjct: 73  VKL-LHLVDLEAGAILLYRREQLSHLVTQGVEDIE--------LIEKDLDQYSVLRRAFV 123

Query: 387 YRSDRTCIAASA----RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
            R      AA       +     +    + + ++         E +         +   +
Sbjct: 124 MRKSVQLPAAEGMYESAVPVQSPSNGGVVGIIYLKHPFEQFNLEQVGDILDLSRKLGMTL 183

Query: 443 NKRKM--EIEVMQLCS--ILEATSDGIAIINREGIILSTNRAVSKLF---------GYPV 489
            +  +  ++E  ++ +  +L++  + +  I   G  +  N+A+  +F         G+  
Sbjct: 184 ERHLLFHQMEHEKIKTYQLLDSIREAVLYIESSGEQIYANQALLNMFPPKLVNQAQGFRH 243

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
                      ++Q     ++ Y+ ++++ ++                L +    I    
Sbjct: 244 AYERATSLFEHIDQAD--ALHDYIGQLMNGEIPG-ETIELSAFRGNLLLSAYAERIAIAN 300

Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                 L + D+++ K+   K              +S+F++ VSHE+RTPL++I+GF+E+
Sbjct: 301 VEWGMMLVLRDVTKEKELDLK--------------QSEFVSIVSHELRTPLSSIMGFTEL 346

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           +  +    L  PR  +Y   I      + ++++D+L+I K E        + + L + V 
Sbjct: 347 LMRR---TLDGPRQKKYLETIHSETVRLAELIDDILEIQKGEDLTQGTTKKRMDLKKLVF 403

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
           E   +  L +++ RI  R +F      + A    +KQ+  N++ NAI ++P GG I I  
Sbjct: 404 EMRPMFDLASSKHRI--RVAFEPGRYELTASEEKMKQLFTNLIMNAIKYSPDGGLIQIK- 460

Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
               +  + L V D G+G+    +      F +  NS   +  GTGLGL + + +V  + 
Sbjct: 461 GVVQDHLIRLTVEDEGIGIPEKSVPFIFDKFYRADNSDTRKIGGTGLGLAICQMIVKDHD 520

Query: 790 GKFYIFSTPAKGTLIEIIFPL 810
           G   + S    G+   + FP+
Sbjct: 521 GTISVQSEEGIGSTFTVEFPI 541


>gi|119512919|ref|ZP_01631982.1| Multi-sensor Hybrid Histidine Kinase [Nodularia spumigena CCY9414]
 gi|119462415|gb|EAW43389.1| Multi-sensor Hybrid Histidine Kinase [Nodularia spumigena CCY9414]
          Length = 632

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 75/492 (15%), Positives = 189/492 (38%), Gaps = 43/492 (8%)

Query: 339 GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398
           G    A      +  Y++  D   A      L   +L  ++ ++ +    ++        
Sbjct: 26  GEFQVAGCELSWIDNYQAAKDAIAAQNHDIYLVDYRLGIHSGLELLREAVANGCSSPIIL 85

Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458
               +    +  + +  +    A+   ++     +    +   + +++ E ++ Q  ++L
Sbjct: 86  ----LTGQGDREIDLEAMKAGAADYLEKSQLTAPLLERSIRYAMERKQTEQKIRQQAALL 141

Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
           +  +D I + + +  +L  N+A   L+G+   +++ K       +N   ++      ++ 
Sbjct: 142 DIATDAIFVHDIDDPVLFWNKAAEDLYGWKKAEVIGKKTHELWHENNQPLLQEAFQHLMQ 201

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF----SSCYSLTMHDISEWKQEKNKLSHA 574
                + E      TK  K + +      +           +   DI++ KQ +++   A
Sbjct: 202 HG---SWEGELHQRTKSGKEIIVESRWTLVQNFGNRPQSILVVNTDITQKKQLESQFLRA 258

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
           +++            + ++H++   L  I+  ++++++Q    + + R       +  + 
Sbjct: 259 QRL-----ESIGTLASGIAHDLNNVLAPIMMTAQLLESQ----MHDERSRRLLPILISNA 309

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
                +VN +L  ++   G+  L    + L   + E   +++     K I + +    ++
Sbjct: 310 KRGASLVNQVLSFTRGLEGERTL----LQLKHLIIEIQQIIKETFP-KSIEVTSQIPPHL 364

Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT--HTSNEE------------VILR 740
             +  D   + Q+ +N+  NA    P GG + I                       V++ 
Sbjct: 365 WTVSGDATQLHQVLMNLCVNARDAMPKGGNLKILAENLLVDENYARMNIDTQIGSYVVIT 424

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V DTG+G++   L++  +PF     +    G+GTGLGL     +++++ G   + S P K
Sbjct: 425 VMDTGMGISPEILDRIFEPFFTTKET----GKGTGLGLSTVMGIINSHGGFVKVQSQPGK 480

Query: 801 GTLIEIIFPLYD 812
           G+  ++  P  D
Sbjct: 481 GSQFQVYLPAQD 492



 Score = 45.4 bits (106), Expect = 0.037,   Method: Composition-based stats.
 Identities = 23/198 (11%), Positives = 49/198 (24%), Gaps = 19/198 (9%)

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
           LLT +     + E       +   K Q    L   S                   ++   
Sbjct: 85  LLTGQGDREIDLEAMKAGAADYLEKSQLTAPLLERSIRY---------AMERKQTEQKIR 135

Query: 321 LTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
                +D      FV+     + + N +   L  +K  + I                +NN
Sbjct: 136 QQAALLDIATDAIFVHDIDDPVLFWNKAAEDLYGWKKAEVIGKK-------THELWHENN 188

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
                  ++      +    LH    + +    +        N          +  +   
Sbjct: 189 QPLLQEAFQHLMQHGSWEGELHQRTKSGKEI-IVESRWTLVQNFGNRPQSILVVNTDITQ 247

Query: 440 TRINKRKMEIEVMQLCSI 457
            +  + +  +   +L SI
Sbjct: 248 KKQLESQF-LRAQRLESI 264


>gi|53712805|ref|YP_098797.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
 gi|52215670|dbj|BAD48263.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
          Length = 870

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 83/525 (15%), Positives = 167/525 (31%), Gaps = 42/525 (8%)

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIE 361
           +  +    +        +               Y     + + N S L +      +   
Sbjct: 366 IHAQTRLLIQNRLVAQRDEFDNVFHSIRDGVITYDTDFRIHFTNRSLLKMLHLPKDEAAR 425

Query: 362 IAGGLST--LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
              GL    +              +    ++ + +         + +  +   ++     
Sbjct: 426 PYEGLPAGSIFKIYNNGKEILRPMLKQVVTEESSVVIPENSFMQEVHSGSYFPVSGEVVP 485

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE---------ATSDGIAIINR 470
                 +            D        E++       ++             G+     
Sbjct: 486 IRAH-GKITGMALSARNISDE-------EMQKRFFRMAVDESSIYPWQYNIRTGLFTF-P 536

Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530
            G +                ++        +  +            L+  L Q+      
Sbjct: 537 AGFLTRF-GFAENKTTISRGEM-----DRMIHPDDQESAYEIFNRALA-GLSQSTRMSFR 589

Query: 531 GSTKEEKLLSLRIIIKKLPF-----SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
             + +            L                 I  +K  + +L+ A+  A +    K
Sbjct: 590 QLSGDGNYEWWEYRTSVLAGLTTDTPYSILGVCQSIQRYKTTEEELTAARDKALQADKLK 649

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
           S FLA +SHEIRTPL AI+GFS+++ +             +   I+++  L+L ++ND+L
Sbjct: 650 SAFLANMSHEIRTPLNAIVGFSDLLSDT--SGFTEEEVKLFIETINKNCGLLLALINDIL 707

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSV 704
           D+S+IESG M+  F   +L   +       +L      + +      N  + ++ D   +
Sbjct: 708 DLSRIESGTMDFQFAGHNLPLLMKNVYDSQRLNMPP-GVQLVLKLPENSKKYLVTDNVRL 766

Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764
           +Q+  N+++NA+ FT  G  I    T        L V DTG G++   L    + F ++ 
Sbjct: 767 QQVVNNLINNAVKFTTQGS-ITFGYTEEEPGYTSLFVEDTGKGISEDGLRHIFERFYKVD 825

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +      +G GLGL + + +V    G   + S    GT   +  P
Sbjct: 826 SFT----QGAGLGLSICQTIVGRLNGMITVASEEGHGTRFTVRLP 866


>gi|118579341|ref|YP_900591.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
 gi|118502051|gb|ABK98533.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
          Length = 785

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 85/592 (14%), Positives = 183/592 (30%), Gaps = 47/592 (7%)

Query: 237 KNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS 296
              V    +  A +                      E     +      +    T     
Sbjct: 88  AAMVGVQRDSLAGEPLERFITPEEHEAFLGRRTRLHESQERQSWEMRMLRDDGSTFWAQL 147

Query: 297 KESFEYLSHR----NHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLL 351
           +   E         +  +     +    L   T+D       ++ + G ++  N      
Sbjct: 148 QAIPEREGESWITLDDITARKRDESDLELKSFTLDNLAEEVLWLAADGTIWNINQVACEK 207

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411
             Y   + +     LS +   P+++           +        S+     +       
Sbjct: 208 LGYNRDELLN----LSVMDINPQMTKEGWRSFWEELKQTGNLKLESSH----RTRDGRCY 259

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471
               +         E      I  +    +  ++ ++    Q  ++  +   GI   +RE
Sbjct: 260 PTEVVANYFNRNGFEYCY--SIVRDITAHKNLEKALQDSEEQFRTLCNSAPIGIFSADRE 317

Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
           G  + +N    ++ G    + + K +T  +  +          E +S    +        
Sbjct: 318 GNSILSNPRWEEIAGLSAAECIGKGWTRAIHPDDREEQAKTWLEAMSTG--RVYSHEYRL 375

Query: 532 STKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
            T   K + +R +   +         Y  T+ DI+E +Q + ++   +K+          
Sbjct: 376 LTPLGKTIWVRALANPIKDPDGTVLGYVWTVEDITELQQSRQEILKTQKL-----ESLGV 430

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
               ++H+    LTAI+G    I   R       +  +     + +     D+   L+  
Sbjct: 431 LAGGIAHDFNNILTAILGN---ISLARLQLNDTAKVTKRLEEAETATTRAKDLTRQLITF 487

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707
           ++   G   L    + +   + EA        +   +  R    ++I  + AD   + Q+
Sbjct: 488 AR---GGEPLKK-NIDVSSLLREATDFA---LHGSNVKCRFDLPDDIWMVEADEAQLSQV 540

Query: 708 ALNILSNAIHFTPSGGQIIISTT---HTSNEE--VILRVRDTGVGMTNYELEKAMKPFGQ 762
             N++ NAI   P GG I I  +           V + V DTG G+  + +++   P+  
Sbjct: 541 IHNLVFNAIQAMPGGGTISIGASNVVSQEGGRKFVKISVTDTGTGIPAHHMQQIFDPYFS 600

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
              +        GLGL    +++  + GK    ST  +G+   +  P  D +
Sbjct: 601 TKENSI------GLGLATCHSILKKHGGKIRAASTLGRGSTFLVSLPAADQA 646



 Score = 70.8 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 52/511 (10%), Positives = 135/511 (26%), Gaps = 43/511 (8%)

Query: 35  ETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGY 94
           +   ++   P  +   +    +            D    ++       V +   I   G 
Sbjct: 21  QRNPAQPNEPPRNGSHRLPEREGGGRHCPQPGLKDILARYLDLFDLAPVGYV-TISQGGT 79

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPIE 153
           + E +      +G     + G  L         +        L + Q     +  +   +
Sbjct: 80  VVEANLTFAAMVGVQRDSLAGEPLERFITPEEHEAFLGRRTRLHESQERQSWEMRMLRDD 139

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
           G+       L A+P        +                 +     L+ K   L  + + 
Sbjct: 140 GSTF--WAQLQAIPEREGESWIT----------LDDITARKRDESDLELKSFTLDNLAEE 187

Query: 214 HSSVEKEKYDIFSQQSPPPHLRM-KNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ 272
              +  +       Q     L   ++++ +L+    +     +  +      +++   + 
Sbjct: 188 VLWLAADGTIWNINQVACEKLGYNRDELLNLSVMDINPQMTKEGWRSFWEELKQTGNLKL 247

Query: 273 EDFHTINLNQYTKKQYFGTLQNNSKE---SFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
           E  H     +    +      N +              H +L     + E       +  
Sbjct: 248 ESSHRTRDGRCYPTEVVANYFNRNGFEYCYSIVRDITAHKNLEKALQDSEEQFRTLCNSA 307

Query: 330 PIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388
           PI  F     GN   +NP +  +    + + I   G    +    +          M   
Sbjct: 308 PIGIFSADREGNSILSNPRWEEIAGLSAAECI-GKGWTRAIHPDDREEQAKTWLEAM--- 363

Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
           S     +   RL T       ++ +  +     +     +       +  + + +++++ 
Sbjct: 364 STGRVYSHEYRLLT---PLGKTIWVRALANPIKDPDGTVLGYVWTVEDITELQQSRQEI- 419

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
           ++  +L S+      G+      GI    N  ++ + G                 +T  V
Sbjct: 420 LKTQKLESL------GVL---AGGIAHDFNNILTAILG-------NISLARLQLNDTAKV 463

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
                    +    + L +  +   +  + L
Sbjct: 464 TKRLEEAETATTRAKDLTRQLITFARGGEPL 494



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/168 (12%), Positives = 40/168 (23%), Gaps = 19/168 (11%)

Query: 32  NGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDA 91
           NGFE   S   +       +    D  ++  +  N                    ++ D 
Sbjct: 271 NGFEYCYSIVRDITAHKNLEKALQDSEEQFRTLCNSAPIG--------------IFSADR 316

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQNTWYGKTTLW 150
            G     +    +  G  A + IG            +       + +     +  +  L 
Sbjct: 317 EGNSILSNPRWEEIAGLSAAECIGKGWTRAIHPDDREEQAKTWLEAMSTGRVYSHEYRLL 376

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
              G    + +   A PI   +    G+     V         R    
Sbjct: 377 TPLGKT--IWVRALANPIKDPDGTVLGYVW--TVEDITELQQSRQEIL 420


>gi|229525368|ref|ZP_04414773.1| phosphate regulon sensor protein phoR [Vibrio cholerae bv. albensis
           VL426]
 gi|229338949|gb|EEO03966.1| phosphate regulon sensor protein phoR [Vibrio cholerae bv. albensis
           VL426]
          Length = 433

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 75/402 (18%), Positives = 153/402 (38%), Gaps = 30/402 (7%)

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDT-RINKRKMEIEVMQLCSILEATSDGIAI 467
           ++           +                   R  ++++   + +  +  E+  D + +
Sbjct: 54  SAWLWDEKRLTPPSGTGNWESLFNGIYRLQQRHRKKRKELTNLIRRFRNGAESLPDAVVV 113

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
              EG I+  NR    L G+   D   +P +  L          ++  +   D    LE 
Sbjct: 114 FRSEGNIVWCNRLAQHLLGFRWPDDAGQPISNLLRTP------DFIKYLKKDDFTDPLEM 167

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
                +       L + I        + + + D+++ KQ +                + +
Sbjct: 168 ----RSPLNSDRMLELRIVPYTEGE-HLMVVRDVTQLKQLEG--------------MRRN 208

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           F A VSHE+RTP+T + G+ E+   +    L  P + +    +    N +  +VN LL +
Sbjct: 209 FFANVSHELRTPMTVLQGYLEM--TEDPDVLAGPMWSKAHGVMTEQLNRMNSLVNQLLTL 266

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707
           SKIE+  M    + V +   +          + E +  +      ++ ++LAD   ++  
Sbjct: 267 SKIEASPMVELDQVVDVPSMLEVLEKEAVSLSGEAQHKLHFEVDKSL-KVLADEDQLRSA 325

Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
             N++ NA+ +TP G QI +   + + +   L V D G G+    L +  + F ++  ++
Sbjct: 326 ISNLVYNAVKYTPPGAQIDVRW-YRTGKGACLEVEDKGEGIEPQHLHRLTERFYRVDKAR 384

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
                G+GLGL + K  +  +     I+S    G+    + P
Sbjct: 385 SRDTGGSGLGLAIVKHALAHHDTHLDIYSKVGVGSKFSFVLP 426


>gi|110596980|ref|ZP_01385270.1| PAS [Chlorobium ferrooxidans DSM 13031]
 gi|110341667|gb|EAT60127.1| PAS [Chlorobium ferrooxidans DSM 13031]
          Length = 999

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 103/575 (17%), Positives = 206/575 (35%), Gaps = 43/575 (7%)

Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
           + L+ E      +E+  +  Q      N     +   F  +Q+  +E             
Sbjct: 16  EELERELLKRCETEQELIENQAALRHQNSTLIRQSVEFFDVQHRLEEKSIERERSCERIE 75

Query: 312 SA--YFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLST 368
            A     E E+     +   P       H   + Y N S        SV        +  
Sbjct: 76  EAFGSLRESEHTLASVLVNSPDTIIAVDHDYRIIYVNRSMPCFHGTLSVGANLFDHIIGP 135

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
             +    +     +   L   +   I           +   +       F    Q  +  
Sbjct: 136 CREEYFQTLGTVFETGRLRVIESGFIH----------SGNAATIEVESRFAPCFQGEKVG 185

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
               +  +  + +  +  ++  +  L            ++ RE   +     + KL    
Sbjct: 186 FVVILASDISERKQMELDLKHSLHDLERFNR------LMVGRELRNIEMKAELEKLRAGR 239

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
             +   +  T  +              +L+++     +      +  +++     +I + 
Sbjct: 240 SREEEIRMHTDGMVSEDKVEDFTLEDHLLAIEKAGLFDF---LDSGTDEISRESDLIYRK 296

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH-----------KSDFLARVSHEIR 597
              +     + D ++ + E  + +   + + + +             KS FLA +SHEIR
Sbjct: 297 HQRTALLNLIEDANQARNELIETNRKLEESMRLTEEMARNAEAANAAKSQFLANMSHEIR 356

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TP+  +IG ++++   R           Y   I+ SG  +L I+ND+LD SKIE+  + L
Sbjct: 357 TPMNGVIGMADLLLETRLST----DQRNYVEIINGSGRNLLKIINDILDFSKIEARMLEL 412

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAI 716
                 L + + E   ++ L A +K + +      ++P  +  D   ++QI +N++ NA+
Sbjct: 413 DAIDFDLFDLLEEICGVLGLEARDKGLELLLITGFDLPFSLKGDPARIRQILVNLIGNAL 472

Query: 717 HFTPSGGQIIIST----THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
            FTP GG++++          N  +   VRDTG+G++  +L+K  +PF Q   S   +  
Sbjct: 473 RFTPEGGEVVLKVMVQQQTDRNAVIRFNVRDTGIGISADKLQKIFEPFTQADGSNIRKFG 532

Query: 773 GTGLGLPLAKAMVDAN-MGKFYIFSTPAKGTLIEI 806
           GTGLGL ++  +V     G  ++ S P  G     
Sbjct: 533 GTGLGLSISNDLVLKMGGGGIHVESEPGSGASFWF 567


>gi|119897666|ref|YP_932879.1| putative two-component sensor kinase [Azoarcus sp. BH72]
 gi|119670079|emb|CAL93992.1| putative two-component sensor kinase [Azoarcus sp. BH72]
          Length = 904

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 73/629 (11%), Positives = 182/629 (28%), Gaps = 30/629 (4%)

Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD 251
               + K  D+ F+   ++       +                  +           H+D
Sbjct: 283 RRVQVEKERDRLFNLSLDMLC-VVGFDGAFRRCNPAFEHILGYAPETLPGLPLLEIVHRD 341

Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
           D+  T +     +    +  +      + N          ++                + 
Sbjct: 342 DIASTLEQMRRLAGGEPVKFENRCRCADGNYKWLMWSINPVREEKLVYAVAHDITGRKAA 401

Query: 312 SAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
                          +        +   G + Y N +F  +  +   + +    G S   
Sbjct: 402 EEALRAESAFRKAMEESVLTGLRAIDLSGRIIYVNSAFCRMVGFSEKELV----GASEPF 457

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
                 D    +  +          +   +  I+      L   F      +        
Sbjct: 458 PYWPSEDLEFCRRNLELTLAGRAPPSGFEM-RIRRKNGERLDARFYLSPLIDLEGRQTGW 516

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPV 489
                +  + +  +  +E    +  ++L+     + + +     IL  NRA   + G+  
Sbjct: 517 MASVTDITEPKRVRAALEATHERFEAVLDGLDAAVFVADARTDEILFANRAFKTIHGF-- 574

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK-EEKLLSLRIIIKKL 548
            D + +                     L++                  +   +R    + 
Sbjct: 575 -DTVGRTVRGVAVPQPERGDYRVDPRGLTVGDLPRELFDGELQHPLSGRWYHVREHATRW 633

Query: 549 PFSSCY-SLTMHDISEWKQEKNKLSHAKKIAEKESSH--KSDFLARVSHEIRTPLTAIIG 605
                       DI++ KQ        ++  ++ +      +  + ++HE+  PL+AI  
Sbjct: 634 VDGRVVRMGIATDITDRKQTAEVSRQQEERLQRTARLITMGEMASTLAHELNQPLSAIAN 693

Query: 606 F-SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           + +  +   +         +               I+  + +  K    K       V +
Sbjct: 694 YCAGCVTRMQGDNWKQEDILGAMQKASFQAERAGKIIRRIREFVK----KSEPRRSAVQI 749

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT----P 720
            E + +A+    + A    I I  +   ++P + AD   ++Q+ LN++ N +       P
Sbjct: 750 GEVLDDALGFADIDARRVGIRIVAAVDPDLPAVYADRIMIEQVVLNLVRNGLDAMADTLP 809

Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
              ++++         V + V D G G+   + ++   PF         + EG G+GL +
Sbjct: 810 EERELVVRARAFGPHAVEVAVIDRGHGIGEEDRQRLFTPFYTT------KAEGMGMGLNI 863

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            +++++ + G+  +   P  GT+     P
Sbjct: 864 CRSIIEFHDGRLVVDGNPEGGTIFSFTLP 892



 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/496 (9%), Positives = 122/496 (24%), Gaps = 59/496 (11%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151
            G  +  +      +G     + G+ L ++     I         L        +     
Sbjct: 308 DGAFRRCNPAFEHILGYAPETLPGLPLLEIVHRDDIASTLEQMRRLAGGEPVKFENRCRC 367

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
            +G   Y  +  +  P+            + + H            +        + E  
Sbjct: 368 ADGN--YKWLMWSINPVREEK------LVYAVAHDITGRKAAEEALRAESAFRKAMEESV 419

Query: 212 KGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLKTEKYPL---LTSE 265
                       I    S          K  V +   +     + L+  +  L   L   
Sbjct: 420 LTGLRAIDLSGRIIYVNSAFCRMVGFSEKELVGASEPFPYWPSEDLEFCRRNLELTLAGR 479

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP----SLSAYFDEGENL 321
                 +      N  +   + Y   L +       +++          + A  +     
Sbjct: 480 APPSGFEMRIRRKNGERLDARFYLSPLIDLEGRQTGWMASVTDITEPKRVRAALEATHER 539

Query: 322 TPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVD------DIEIAGGLSTLLDAP 373
               +D      FV       + +AN +F  +  + +V        +         +D  
Sbjct: 540 FEAVLDGLDAAVFVADARTDEILFANRAFKTIHGFDTVGRTVRGVAVPQPERGDYRVDPR 599

Query: 374 KLSDNNAIKPVM--LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
            L+  +  + +     +   +      R H  +W     +                  + 
Sbjct: 600 GLTVGDLPRELFDGELQHPLSGRWYHVREHATRWVDGRVV------------------RM 641

Query: 432 GIEPEDVDTRINKRKMEIEVMQLC--SILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
           GI  +  D +        +  +L   + L    +  + +  E      N+ +S +  Y  
Sbjct: 642 GIATDITDRKQTAEVSRQQEERLQRTARLITMGEMASTLAHE-----LNQPLSAIANYCA 696

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
             + R     + +++    M     +           +  +  ++  +         ++ 
Sbjct: 697 GCVTRMQGDNWKQEDILGAMQKASFQAERAGKIIRRIREFVKKSEPRR------SAVQIG 750

Query: 550 FSSCYSLTMHDISEWK 565
                +L   DI   +
Sbjct: 751 EVLDDALGFADIDARR 766



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 60/469 (12%), Positives = 125/469 (26%), Gaps = 58/469 (12%)

Query: 119 CDVSDILHIDPNNHIG--DLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFS 176
            D      + P   +            YG+    P  G  L V + +         R   
Sbjct: 125 TDWLAGDALTPPQALAFNRARDFGRAVYGEAYRNPRGGMVLEVYVPV---------RHGR 175

Query: 177 GFRGFGI-VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR 235
           GFRG  + V+           G   +K    L   +    +V                +R
Sbjct: 176 GFRGAVVGVYSIEGMVRYLVPGWFAEKYRLALENGRGDTLAVNSA-------------VR 222

Query: 236 MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN 295
             ++  S         + L             ++P+      I             L+ +
Sbjct: 223 DTDETLSFQIPLDPPGNGLTLRATAFKA--HGAVPQALPAVLIVGLSVIVLWSLWMLRGH 280

Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYK 355
                +               E + L   ++D   +  F    G     NP+F  +  Y 
Sbjct: 281 VLRRVQVE------------KERDRLFNLSLDMLCVVGF---DGAFRRCNPAFEHILGYA 325

Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
             + +        LL+     D  +    M   +    +    R    +    N   + +
Sbjct: 326 P-ETLPGLP----LLEIVHRDDIASTLEQMRRLAGGEPVKFENRC---RCADGNYKWLMW 377

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
                     E      +  +    +  +  +  E     ++ E+   G+  I+  G I+
Sbjct: 378 SINPVR----EEKLVYAVAHDITGRKAAEEALRAESAFRKAMEESVLTGLRAIDLSGRII 433

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
             N A  ++ G+  ++++          +          E+                 K 
Sbjct: 434 YVNSAFCRMVGFSEKELVGASEPFPYWPSEDLEFCRRNLELTLAGRAPPSGFEMRIRRKN 493

Query: 536 EKLLSLRIIIKKLPF----SSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
            + L  R  +  L       + +  ++ DI+E K+ +  L    +  E 
Sbjct: 494 GERLDARFYLSPLIDLEGRQTGWMASVTDITEPKRVRAALEATHERFEA 542



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/279 (10%), Positives = 71/279 (25%), Gaps = 19/279 (6%)

Query: 66  NYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL 125
             L +E+ F        +     ID  G +  ++    + +G    +++G          
Sbjct: 403 EALRAESAFRKAMEESVLTGLRAIDLSGRIIYVNSAFCRMVGFSEKELVGASEP---FPY 459

Query: 126 HIDPNNHIGD-----LLKRQNTWYG-KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFR 179
               +           L  +    G +  +    G  L     L+  P+       +G+ 
Sbjct: 460 WPSEDLEFCRRNLELTLAGRAPPSGFEMRIRRKNGERLDARFYLS--PLIDLEGRQTGWM 517

Query: 180 GFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL----- 234
               V         RA  +   ++F  + +       V   + D     +          
Sbjct: 518 --ASVTDITEPKRVRAALEATHERFEAVLDGLDAAVFVADARTDEILFANRAFKTIHGFD 575

Query: 235 RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT-LQ 293
            +   V  +      + D     +   +      L + E  H ++   Y  +++    + 
Sbjct: 576 TVGRTVRGVAVPQPERGDYRVDPRGLTVGDLPRELFDGELQHPLSGRWYHVREHATRWVD 635

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP 332
                        +    +    + E     T     + 
Sbjct: 636 GRVVRMGIATDITDRKQTAEVSRQQEERLQRTARLITMG 674


>gi|169772727|ref|XP_001820832.1| two-component system protein A [Aspergillus oryzae RIB40]
 gi|83768693|dbj|BAE58830.1| unnamed protein product [Aspergillus oryzae]
          Length = 708

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 92/510 (18%), Positives = 192/510 (37%), Gaps = 27/510 (5%)

Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
                 + +          P+P  V     ++   + S L L+       +  +      
Sbjct: 56  AEHVTPQHDASLYRIYRYTPVPTIVADANLSIVEVSDSHLALSGQTRDTLLNTSICDIAP 115

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
              P     +    +    S +          +   ++++   +   P  +       + 
Sbjct: 116 SIVPVPDTASLYGAIRAAISTKQIQLIDDIHLS---DKKSYFRLQVTPIFQDRALIYIVF 172

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYP 488
           +   +  D     +     +       +++   D  I +++  G I + N   + + GY 
Sbjct: 173 EAHKDTRDRSDSQDHHHAYVN-ETYKILVDTVKDYAIFMLDTRGNITTWNPGAAIMKGYS 231

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
             +I+ K F+VF               +        +E       ++       ++I  +
Sbjct: 232 ASEIIGKHFSVFYSPEDRRNNKPG-RGLAVCLRDGRMEDEGWRYRQDGSRFWANVMITPV 290

Query: 549 PFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
                   +     D++E K  + +L       E+ S  K+DFLA +SHEIRTP+  +  
Sbjct: 291 YEFGRHVGFVKVTRDLTERKAAEGRLI---AAFEESSRLKTDFLANMSHEIRTPMNGMRL 347

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
              ++ +       +    EYA+ ++ S +++L I+ND+LD SK+ SG  +L  + V ++
Sbjct: 348 ALSMLTDTEL----DNNQREYASILEDSTSVLLQIINDILDYSKLSSGSFSLTSDIVEVE 403

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ 724
             V   +   +    +  + +  S   N P+ +  D    +Q+  N++ NA+ FT  G  
Sbjct: 404 SVVGAVVRNCKS-CLKPGVTLSCSMPPNFPQTMRGDPLRYRQVLQNLIGNAVKFTEKG-H 461

Query: 725 IIISTTHTSNEE------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
           + IST+   + E      V   V D+GVG+    +     PF +  ++ + + +GTGLGL
Sbjct: 462 VKISTSFAIDTEDPRMYNVSTEVVDSGVGVPGSAINTMFTPFTRFADTTRRKYQGTGLGL 521

Query: 779 PLAKAMVDANMGKFYIFSTP-AKGTLIEII 807
            + K++ +   G       P   G++    
Sbjct: 522 SICKSLAELMNGSVGYRPNPDGPGSVFWFT 551



 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/159 (13%), Positives = 44/159 (27%), Gaps = 10/159 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI--DPNNHIGDLLKRQNTW 143
            + +D  G +   +       G  A ++IG              +       +  R    
Sbjct: 208 IFMLDTRGNITTWNPGAAIMKGYSASEIIGKHFSVFYSPEDRRNNKPGRGLAVCLRDGRM 267

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +   +  +G+      ++   P+Y    EF   R  G V V R   + +A   RL   
Sbjct: 268 EDEGWRYRQDGS--RFWANVMITPVY----EFG--RHVGFVKVTRDLTERKAAEGRLIAA 319

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS 242
           F     +K    +    +              + +    
Sbjct: 320 FEESSRLKTDFLANMSHEIRTPMNGMRLALSMLTDTELD 358


>gi|307610980|emb|CBX00603.1| sensor histidine kinase [Legionella pneumophila 130b]
          Length = 773

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 86/409 (21%), Positives = 157/409 (38%), Gaps = 56/409 (13%)

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV----- 508
             SI ++  D   +++R+  I+  + A  +      + IL K        N         
Sbjct: 12  FKSIFDSLPDLYLLLDRDFNIVGVSDAYLQATMVSRKQILGKNVFDAFPDNPNDPKATGA 71

Query: 509 --MNHYLTEILSLDLRQTLEK----ITLGSTKEEKLLSLRIII------KKLPFSSCYSL 556
             +   L  +L      T+      I   + +                            
Sbjct: 72  KNLYASLLRVLKNKSADTMAIQKYDIQRPADRGGGFEERYWSPINTPVLGADQEVEYIIH 131

Query: 557 TMHDISEWK---------------------QEKNKLSHAKKIAEKESSH----------- 584
            + D++E+                      + + ++    +  ++ +             
Sbjct: 132 RVEDVTEFVHLKKTGSAQLKLMEELRTKAGEMEIEIYQRAQEIQEANKQLEEANKNLARL 191

Query: 585 ---KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
              K+ F A VSHE+RTPL  I+G  E++  ++  P            I  +  ++L  V
Sbjct: 192 DQIKTQFFANVSHELRTPLMLILGPLEMLLAEKKLPSF---VQNTLRRIQNNAQILLKHV 248

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701
           NDLL+ISK+++GKM LH+  + L + + + I+L +    E++++      + + +   D 
Sbjct: 249 NDLLNISKLDAGKMILHYANIDLVKLIQQTIALFEAQIPERKLVFSMDLPDEL-QAQIDP 307

Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761
             ++ I +NILSNAI FTP   ++ I     + E   L++ D G G+ +   E   + F 
Sbjct: 308 DKIQHILINILSNAIKFTPQNAKVRIRLVQINPETCRLQIEDNGPGIPSDLCETIFERFF 367

Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           QI         GTGLGL +AK  V+ + G     +    G +  I  PL
Sbjct: 368 QIEEPTTRTVGGTGLGLSIAKDFVELHGGSILAGNARNGGAIFTIELPL 416



 Score = 89.3 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 67/173 (38%), Gaps = 10/173 (5%)

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
           +K       F+   SH+++ PL A+      I  +  G + + +  +Y   + +  + + 
Sbjct: 587 KKAEDELDQFVYHASHDLKAPLPAMEHLISWI-EEDLGEMLSEQSKKYLLLLRQRASRMS 645

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
            +++ LL  +  +SG +      +  D  +++ I  +          +     + +P + 
Sbjct: 646 KLLDGLLKYA--QSGYVFDKVRIIHTDRLITDIIKKLNP-----PQTVTFQLEDTLPVLN 698

Query: 699 ADLRSVKQIALNILSNAIHFTP-SGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
                ++++   +L N+I       G III T    +      V D G G+  
Sbjct: 699 TCELPLREVFTALLDNSIRHHHRKDGHIIIGTK-EKDRFYEFFVADDGPGIEK 750


>gi|162450925|ref|YP_001613292.1| two-component system sensor histidine kinase/response regulator,
           hybrid [Sorangium cellulosum 'So ce 56']
 gi|161161507|emb|CAN92812.1| two-component system sensor histidine kinase/response regulator,
           hybrid [Sorangium cellulosum 'So ce 56']
          Length = 1051

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 82/361 (22%), Positives = 150/361 (41%), Gaps = 13/361 (3%)

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT---EILSLDLRQ 523
           +++  G    +N   ++  G    ++   PF           +   L       +     
Sbjct: 76  LLDAHGTSWESNHTSTRGAGVERREVHGVPFWECRWWQGSPEIQERLKDAVRRAARGEFV 135

Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM----HDISEWKQEKNKLSHAKKIAE 579
             +   LG  + EK +++   +  +       + M     D++E ++ + +++  +    
Sbjct: 136 RYDVEVLGGNEGEKRITIDFNLNPVKDRQGKVVFMIAEGRDVTEQRRLEREVAQHRDELA 195

Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639
                K++F+A VSHE RTPLT I+G  E   +     L             RS   +L 
Sbjct: 196 TLDRLKTEFVANVSHEFRTPLTLILGRVEDALSSPARSLAGDG----LAAAHRSTLRLLR 251

Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA 699
           +VN LLD S+IE+G++   F P  L    +E  S  +       + +          +  
Sbjct: 252 LVNTLLDFSRIEAGRLQTSFAPTDLARLTAELASSFRSLIEGAGLSLVVDCPPLPEPVYV 311

Query: 700 DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKP 759
           D    +++ +N+LSNA  FT  G +I +S     +  V L VRDTG G+ + EL +  + 
Sbjct: 312 DAAQWEKVVMNLLSNAFKFTFEG-EIAVSLRAHPD-HVELTVRDTGTGIPSEELPRIFER 369

Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819
           F ++  ++    EGTG+GL L + +V A+ G     ST  +G+   +  P        + 
Sbjct: 370 FHRVHGARGRSIEGTGIGLSLVQELVKAHGGSLRASSTVGQGSAFTVAIPRGRAHLSPER 429

Query: 820 I 820
           +
Sbjct: 430 V 430



 Score =  211 bits (536), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 58/308 (18%), Positives = 126/308 (40%), Gaps = 11/308 (3%)

Query: 510  NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN 569
              +L  I ++     +        +    L+  ++  +  +S        ++        
Sbjct: 733  EEHLRVIRTIGAHSFMCVPLARRGRLFGTLTFMVVRSERRYSRADLAAAEELGRRCALAV 792

Query: 570  KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI----E 625
              +   + A+   + + +FL+  SHE++TPLT +    + +  +      +   +    +
Sbjct: 793  DNARLYRDAQSAIALRDEFLSIASHELKTPLTPLALQIQTLMRRAPELCPDSERLPWLMD 852

Query: 626  YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL--YANEKR 683
                + R    +  +V +LLDIS+I +G++ L  E V L + V + +S  Q      E  
Sbjct: 853  RLGLVRRQSERLRRLVENLLDISRISAGRLALELEQVRLSDIVRQVVSRFQEGGEIAEAG 912

Query: 684  ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
              +  S A++      D   ++Q+  N++SNA+ +   G  I I+   +      L + D
Sbjct: 913  SRVTVSAADDAAGSW-DRVRLEQVVENLVSNALKYG-QGNPIEITVA-SMGSMATLTIAD 969

Query: 744  TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
             G+G+    + +    F +  ++      G G+GL +   +V+A  G   + S   +G+ 
Sbjct: 970  HGIGIAQEHIGRIFGRFERAVSA--RHYGGLGMGLYITTQVVEALDGSIEVSSVLGEGST 1027

Query: 804  IEIIFPLY 811
             ++  PL 
Sbjct: 1028 FKVTLPLA 1035


>gi|152987692|ref|YP_001349930.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PA7]
 gi|150962850|gb|ABR84875.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PA7]
          Length = 925

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 80/244 (32%), Positives = 139/244 (56%), Gaps = 10/244 (4%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  A+K A + S  KS+FLA +SHEIRTPL  I+GF+ +++     P    R  +Y + 
Sbjct: 269 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTNLLQKSELSP----RQQDYLST 324

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I +S   +L I+N++LD SKIE+GK+ L   P +L + + +A++++   A+EK++ + + 
Sbjct: 325 IQKSAESLLGIINEILDFSKIEAGKLVLENLPFNLRDLIQDALTMLAPAAHEKQLELVSL 384

Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN----EEVILRVRDT 744
              + P ++  D + +KQI  N++ NAI FT  GG + +            ++ + V+DT
Sbjct: 385 VYRDTPVQLQGDPQRLKQILTNLVGNAIKFT-QGGTVAVRAMLEDESDDRAQLRISVQDT 443

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G++  + +   K F Q  NS   +  GTGLGL ++K +++   G+  + STP +G   
Sbjct: 444 GIGLSEDDQQALFKAFSQADNSLSRQAGGTGLGLVISKRLIEQMGGEIGVDSTPGEGAEF 503

Query: 805 EIIF 808
            I  
Sbjct: 504 WISL 507


>gi|88706907|ref|ZP_01104606.1| two-component system sensory histidine kinase [Congregibacter
           litoralis KT71]
 gi|88698829|gb|EAQ95949.1| two-component system sensory histidine kinase [Congregibacter
           litoralis KT71]
          Length = 508

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 102/461 (22%), Positives = 189/461 (40%), Gaps = 38/461 (8%)

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSD---RTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
               L    L    A         +         +A    +       L  ++  F +  
Sbjct: 73  TDDRLAEEDLRSALAGIAATRSTVEALGGMGSDVTALQFNLLRESSTRLLASWRDFYERY 132

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVM----QLCSILEATSDGIAIINREGIILSTN 478
             P+           ++     +++E        Q  ++++ T   IA+ +    I    
Sbjct: 133 NDPDWQSDVDDPIPYLEASQRLKELEQRQAFIAVQRANVIDRT---IALTD---RIT--- 183

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
                + G+     L      FL + T   +         L   + L+        + +L
Sbjct: 184 -----VLGFIASIFLTATLGFFLVRYTNDNLKRLKRGTQRLGAGE-LDYRIDDIDDDGEL 237

Query: 539 LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
             L I    +              + ++  ++   AK+ A++ ++ KS FLA VSHE+RT
Sbjct: 238 GDLAIAFNTMSD------------KLRRAIDEEIDAKQSADEANAAKSRFLANVSHELRT 285

Query: 599 PLTAIIGFSEVIKNQRFG--PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           PL AIIG+SE++ ++     P+   +Y    + I  SG  +L +++D+LD+SKIE+GKM 
Sbjct: 286 PLNAIIGYSEMLHDELDDEAPVDREQYQSDLDKIVLSGRQLLALIDDILDLSKIETGKMT 345

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716
           L  E     EA++ A+  +         ++     +++P+I  D    +Q+ +N+LSNA 
Sbjct: 346 LVREAFHPGEALTMAVDALAPLLRRNGNVLECDDFSDLPQIHNDAVKFRQVIVNLLSNAA 405

Query: 717 HFTPSGGQIIISTTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
            FT  G  I +S +  ++  ++ + V DTG+GMT  +       F Q  ++      GTG
Sbjct: 406 KFTEQG-VIRVSASFEASSAQLSIAVSDTGIGMTEEQQALVFDAFVQAEDTTSNTYGGTG 464

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           LGL + +   +   G   + S+P +G++  +  P    S P
Sbjct: 465 LGLAICRDFCELMGGTIAVQSSPGEGSVFTVSLPADPESVP 505


>gi|253568196|ref|ZP_04845607.1| two-component system histidine kinase [Bacteroides sp. 1_1_6]
 gi|251842269|gb|EES70349.1| two-component system histidine kinase [Bacteroides sp. 1_1_6]
          Length = 499

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 99/507 (19%), Positives = 174/507 (34%), Gaps = 33/507 (6%)

Query: 323 PETVDKCPIPFFVYS-HGNLFYAN-PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
            E ++  P    +++ +G +   N  +   L  + SV+++        L       ++  
Sbjct: 11  DELLNILPDGVIIFNINGEVIQLNHQALTELHVHSSVNEMMPLSTND-LFKLLNNKEDIL 69

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
              +   R      +        +        +    F    +                 
Sbjct: 70  SVILEKIRQGEQTYSLPEHTFMQEQIDYTQFPIR-GDFATIKEEGHLKKILFFFRNITVE 128

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREG-IILSTNRAVSKLFGYPVED---ILRKP 496
              +         L + L+ T       +         NR    L G    +   +  + 
Sbjct: 129 LTQEYI-------LNTALQRTKIYPWYYDINRSEFTLDNRYFEHL-GISAGENNTLTMEE 180

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--- 553
           +   +  +    M       LS                +            +   S    
Sbjct: 181 YVNMIHPDDRQAMADAFIVQLSGMETFDKSVPFRLHRGDGTWEWFEGQSTYIANISGHPY 240

Query: 554 -YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
                   I E+K  +N L  A+K AE+    K  FLA +SHEIRTPL AI+GFS+VI +
Sbjct: 241 RLVGICMSIQEYKDIENTLIEARKKAEESDRLKMAFLANMSHEIRTPLNAIVGFSDVIGS 300

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
             +  L      ++   I  +   ++ +++D+LD+SKIES  +   F   SL   + +  
Sbjct: 301 T-YDELSEEERADFVRLISINSEHLVRLIDDVLDLSKIESNTIKFTFTDCSLRSLMIDVE 359

Query: 673 --SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
               ++  +    I IR S  N    I  D   +KQ+  N ++NA  FT  G  I     
Sbjct: 360 KEQTMKPISE---IEIRASLPNEDVYINTDATRLKQVISNFINNARKFTEKG-YIHFGYA 415

Query: 731 HT--SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                   V + V DTG G+     ++    F ++   +    +GTGLGL + K +V+  
Sbjct: 416 VDSVDASSVHVFVEDTGSGIPKECQKEIFDRFYKVDTFK----QGTGLGLSICKTIVEHL 471

Query: 789 MGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            G  ++ S   KG+   +  P    S 
Sbjct: 472 QGDIFVESETGKGSRFTVTLPFERQSE 498


>gi|239908975|ref|YP_002955717.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239798842|dbj|BAH77831.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 939

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 83/260 (31%), Positives = 133/260 (51%), Gaps = 9/260 (3%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E ++ + KL  AK +AE+ +  K+DFLA+V+HE+RTP+ AI G ++ + +          
Sbjct: 401 ENEKIRQKLEEAKVVAEQANKTKTDFLAKVTHEVRTPMNAIKGMNDYLLSTALTA----D 456

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             +    I  S + +L IVNDLLD+SKIE+GK+ L     +L   +     L+   AN+K
Sbjct: 457 QRDCLTAIKESSDHLLTIVNDLLDLSKIEAGKIVLETIDFNLKSVIESTTRLMLPLANKK 516

Query: 683 RILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGG----QIIISTTHTSNEEV 737
            + + T   ++    +  D   ++QI LN+ +NA+ FT  GG        +       E+
Sbjct: 517 NLELVTLLDDSADVVVRGDPARLRQILLNLTNNALKFTKLGGIAVTASATTDATAGGYEI 576

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
            + V DTGVG+    L+   +PF Q  +S   +  GTGLGL + K +V    G   + ST
Sbjct: 577 AITVSDTGVGIERARLDTIFEPFTQGDDSTSRKFGGTGLGLSVCKQLVGLMHGAITVEST 636

Query: 798 PAKGTLIEIIFPLYDTSHPH 817
           P +G+   +  PL    + H
Sbjct: 637 PGEGSSFTVRLPLAQGDYNH 656


>gi|284035528|ref|YP_003385458.1| PAS/PAC sensor signal transduction histidine kinase [Spirosoma
           linguale DSM 74]
 gi|283814821|gb|ADB36659.1| PAS/PAC sensor signal transduction histidine kinase [Spirosoma
           linguale DSM 74]
          Length = 752

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 112/753 (14%), Positives = 229/753 (30%), Gaps = 41/753 (5%)

Query: 76  FDPIPRTV-RFTWNIDAHGYLKEISEELPKTIGNYAFK-----MIGMRLCDVSDILH--- 126
             P  R V  F    DAHG L ++  E          +      +GM    + + L    
Sbjct: 16  ESPGKRPVFLFLPLRDAHGKLVDLWLETASLASLSVTEVCFSSWLGMPSSLLLEPLWQTL 75

Query: 127 -IDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVH 185
             D    +   L       GK T+ P+ G  L   ++    PI   + + +      ++ 
Sbjct: 76  EADLVGCLHYQLASGKL--GKVTVTPLPGRYLVELLEET-PPILD-DGDATDAI---VLR 128

Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE 245
                       + L   F    ++    +S  +      +      +   + K      
Sbjct: 129 TVEDYLQ--QKNRELKTFFDGALDMHSISNSQGRFFEVNHAFYQTLGYSPDELKQIPFLN 186

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
                +     E             +       +      +     +  +          
Sbjct: 187 LIHPDEQSWVYENLLRNILHHPVRNQVNRLRRKDGTYRVFEWN--AIGIDEVVYGSARDI 244

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAG 364
                                       +  +   N    +     +             
Sbjct: 245 TEREQAQEQLHALHERLQLATQAAGQGIWENNLEKNEIIWDDRLWEIHGLPPSKHKRSYA 304

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
                +     +   A + + L  +D    A     + I W    +  +           
Sbjct: 305 DYLQTIHPDDRAAFLAKRQLELAGTDDRLEAI----YRIHWPDGTTRWIETNGRIFRYPD 360

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSK 483
                  G+  +     +    +     +   I +   +   I + +   +L  N A  +
Sbjct: 361 GRPRRLIGVAWDITPRMLADAALRDSEQRFRQIADHVDEVFWIHSAQPFELLYINPAYER 420

Query: 484 LFGYPVEDILRKPFTVF--LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
           ++    E I   P +    + +     M  +  +  +    Q           +     +
Sbjct: 421 VWQRSCESIYEDPMSFMDGIVEEDKPAMQAFFQDYRAGKEGQM---DYQLERPDGSRCWV 477

Query: 542 RIIIKKLPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
            +    +  ++ +       + DIS  K+++  L  A    ++ S  KS F+A VSHE R
Sbjct: 478 SVRSFIVRDAAGHIIRHLGVVTDISSQKEKELVLQQALLRTQELSQLKSQFVATVSHEFR 537

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TPL  +    E+I              ++   I++    V D+++D L  S +ESG + +
Sbjct: 538 TPLATMQSSLELINYHLASAATPVPISKHLRVIEQEIEKVTDLLSDFLSASALESGNIRV 597

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
           +     L     E +S       ++R            ++ +D R V+ + +N+L+NA  
Sbjct: 598 NARWFDLVALCEELLSTHFSRRQDQRRT-HFLVEGTACQLYSDPRLVEHVLINLLANAFK 656

Query: 718 FTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
           F+ +     +      + EV++ V D G+G+   E     + F +  N+  IR  GTGLG
Sbjct: 657 FSTTDPP-TLRIEFKPS-EVVVYVIDQGIGIPLSEQGNLFQAFFRASNAGAIR--GTGLG 712

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           L +A+  V+   G   + S   KG+   +  P+
Sbjct: 713 LVIARQFVEHLCGHLGVESQEHKGSTFTMTLPI 745


>gi|163795844|ref|ZP_02189808.1| adenylate/guanylate cyclase [alpha proteobacterium BAL199]
 gi|159178877|gb|EDP63413.1| adenylate/guanylate cyclase [alpha proteobacterium BAL199]
          Length = 700

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 98/304 (32%), Positives = 161/304 (52%), Gaps = 2/304 (0%)

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL-PFSSCYSLTMHDISEWK- 565
              H  +  +   +    +    G   +   + +   ++ +    +     + + +    
Sbjct: 384 AAEHEASSAMQDLIVSMEDHFRSGRMDDPIPVEIGSEVEPVARQYNRVVARVREDTRRME 443

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           Q    L+ AK  AE  +  KS FLA +SHE+RTPL A+IGFS+++ N+ FG LG+ RY  
Sbjct: 444 QSVEALASAKSEAEAANRAKSAFLANMSHELRTPLNAVIGFSDLLGNEPFGKLGDDRYKT 503

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           YA  I  +G  +L +VNDLLD S+IE+GK+ LH   V +   V     +++  A  + + 
Sbjct: 504 YAEDIRMAGEHLLTLVNDLLDHSRIEAGKVELHEIDVDVRAVVRRVGRMMEDLAKNRGLT 563

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +      ++PR+ AD R V+Q+ LN++SNA+ FT SGG++ +      ++ + L V DTG
Sbjct: 564 LDLHIDADLPRLHADERLVRQVLLNLVSNAVKFTQSGGRVEVVGRLEPDDRIALVVADTG 623

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +GM   ++ +AM+PF Q+ +       GTGLGLPL  +MV  + G   + S    GT + 
Sbjct: 624 IGMDRGDIARAMEPFVQLNDRYDKSYGGTGLGLPLVNSMVRLHGGTLTVDSMKGHGTTVS 683

Query: 806 IIFP 809
           + FP
Sbjct: 684 VRFP 687


>gi|317470855|ref|ZP_07930236.1| hsp90-like protein [Anaerostipes sp. 3_2_56FAA]
 gi|316901682|gb|EFV23615.1| hsp90-like protein [Anaerostipes sp. 3_2_56FAA]
          Length = 1062

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 79/341 (23%), Positives = 152/341 (44%), Gaps = 22/341 (6%)

Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLT----EILSLDLRQTLEKITLGSTKEEKLLSL 541
           G    + L+  +   + +         L+                +       +     +
Sbjct: 568 GSDRYEKLKSAYMKLIHEYERDKFAAELSVDSIRQRIGAGETIYAREFR-RDYDGCYGWM 626

Query: 542 RIIIKKLPFSSCYSL--------TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
           RI I      +   +           +  + ++ +  L  A + A+K +  KS FLA++S
Sbjct: 627 RIHIILAESRNGIPVKVILAAHSVEEEKEQEERNRKALLAAYEAAKKANEAKSSFLAQMS 686

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           H+IRTP+ AI+G + +  ++   P    +  E    ID S + +LD++N++LD+SKIE G
Sbjct: 687 HDIRTPMNAIMGMTSIAASRINDP---EKVRECLTKIDMSSSHLLDLINEILDMSKIEKG 743

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNIL 712
           K+ L  EP  L E +++  S+ +  A +K   +     + +    + D   ++Q+ +N++
Sbjct: 744 KIELTEEPFCLRELITDINSITRPEALQKGQELLFRTVDVVHTDFIGDAGRIRQVLINLI 803

Query: 713 SNAIHFTPSGGQIIISTTHTSN-----EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
           +NA+ +T +GG+II+     +         +  V D G+GM    L     PF +  +S+
Sbjct: 804 TNAVKYTQNGGRIIVEVQEVTGRTPGAASFVFTVEDNGIGMDPDFLNYIFVPFSRADDSK 863

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
             R +GTGLG+ +A+ +V A  G     S   +G+   +  
Sbjct: 864 VRRVQGTGLGMSIAQGIVSAMNGNIQAESRKGQGSRFIVTL 904


>gi|254467263|ref|ZP_05080674.1| virulence sensor protein BvgS [Rhodobacterales bacterium Y4I]
 gi|206688171|gb|EDZ48653.1| virulence sensor protein BvgS [Rhodobacterales bacterium Y4I]
          Length = 804

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 109/584 (18%), Positives = 213/584 (36%), Gaps = 49/584 (8%)

Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
            + A +  V       L T     L      H+        +     L + +  + + ++
Sbjct: 102 PFVASEPQVRSYAGAALETGSGMRLGAICVAHSAPEQF--GEDTAAILSDLAAIATDLIT 159

Query: 305 HRNHP---SLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY--ANPSFLLLTKYKSVDD 359
                   + +A  D         ++      +V+   +  +   N        Y   + 
Sbjct: 160 RHTDQMLAAEAARKDARNAWLGRIIEASLHEIYVFDPVSWLFEEVNLGARRNLGYSRDEI 219

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
           +   G  +  +     ++  A     L   DR  +  S R         +   ++     
Sbjct: 220 L---GMTALDIKPDFTAEEFAALLAPLRAGDRQTLELSTRHQR---KDGSCYPVSIKLHL 273

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
                P       +  +  + R ++    +   +L   +EA +DG  + +++  ++  N 
Sbjct: 274 LEADRP---LYVAMVEDITEKRADQEAARLANERLSDAVEALADGFVLFDKDERLVLANS 330

Query: 480 AVSKLF---------GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530
             S++F         G    +I+       +          ++   +   + +  +   L
Sbjct: 331 TYSEMFPEGAEIVRPGVSYREIVTSLANSKVYGRPDIDTAAFIESRME--VFRAGDASQL 388

Query: 531 GSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
               + ++L       +      Y     D++E ++ + K   A             FLA
Sbjct: 389 LRISDGRVLKAYD---RRTADGGYVCLRVDVTELEEARAKAEAANAAKSA-------FLA 438

Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650
            +SHEIRTP+  I+G  ++I +    P       +    +  S   +L I+ND+LD+++I
Sbjct: 439 NMSHEIRTPMNGILGMLDLIADTPLTP----EQQDMLQTVTASSETLLAILNDVLDLARI 494

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN--NIPRILADLRSVKQIA 708
           E+G+  L   P S      +   L Q  A+ K I            PR+  D R ++QI 
Sbjct: 495 EAGREELDNAPFSPARVCRKVADLHQAVASHKGIAFEVDLGPGTEDPRL-GDARRIEQIL 553

Query: 709 LNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
            N+  NA+ FT +G ++ +S   T    ++L V DTG G+T  +  +    F Q   +  
Sbjct: 554 HNLCGNALKFTEAG-KVRLS-AWTGPGGLMLSVSDTGTGLTEDDQVRVFSKFEQAGPAAS 611

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI--EIIFPL 810
               GTGLGL + K +V+   G   + S P++GT I  ++  PL
Sbjct: 612 -ALGGTGLGLTIVKELVERMGGSLSVASAPSEGTEIQLQLSLPL 654



 Score = 45.8 bits (107), Expect = 0.030,   Method: Composition-based stats.
 Identities = 23/198 (11%), Positives = 58/198 (29%), Gaps = 18/198 (9%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN--TWYGKTTLWPI 152
            +E++    + +G    +++GM   D+      +    +   L+  +  T    T     
Sbjct: 201 FEEVNLGARRNLGYSRDEILGMTALDIKPDFTAEEFAALLAPLRAGDRQTLELSTRHQRK 260

Query: 153 EGTNLYVPIDLAAL----PIYSRNREFSGFRGFGIVHVNRV-DNDPRALGKRLDKKFSHL 207
           +G+   V I L  L    P+Y             +V        D  A     ++    +
Sbjct: 261 DGSCYPVSIKLHLLEADRPLY-----------VAMVEDITEKRADQEAARLANERLSDAV 309

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
             +  G    +K++  + +  +         ++      Y      L   K       ++
Sbjct: 310 EALADGFVLFDKDERLVLANSTYSEMFPEGAEIVRPGVSYREIVTSLANSKVYGRPDIDT 369

Query: 268 SLPEQEDFHTINLNQYTK 285
           +   +           ++
Sbjct: 370 AAFIESRMEVFRAGDASQ 387


>gi|310825009|ref|YP_003957367.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309398081|gb|ADO75540.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 837

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 114/737 (15%), Positives = 218/737 (29%), Gaps = 105/737 (14%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN--TW 143
            + +DA G+   +     +  G      +G  L +    +  +  +     L  +   + 
Sbjct: 52  VFQVDARGHFTVLGASWEELTGLKVASSLGSSLVEALHPVDRERASGWLRALASREQESL 111

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +  +    GT     ++L A    S   E  G      +         +      ++ 
Sbjct: 112 RQEVRILTRTGTC---WVELFAQSSPSIAGEVVGL-----LTDISERRRAQDAVTTRERC 163

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
            + + E+++   + E E Y      +P       ++V     +      +    K     
Sbjct: 164 LAAVVEVQRRLLTHEPEGYLYQDILAPLGRASGASRVYVFEAHRDVMGRLRVNHKAEWCM 223

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
           +  SS  E                    L+         L     P      D    L  
Sbjct: 224 AGISSRSETPA--------------EVALEEELFPEQAALLSAGQPLQFLTSDTPPKLQA 269

Query: 324 ETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
                                               +   G LS LL   ++        
Sbjct: 270 G-----------------------------------LTNLGILSVLLLPVRVHGEVFGFI 294

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
                         AR                     A               D      
Sbjct: 295 -------GFDNCVEARP-----------WEAVAVSLLAGAAGALSLALEQRSTDALRARA 336

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED-ILRKPFTVFLE 502
           +  +         ++E   D + +      +L  N A  +  G+  +D ++  P    L 
Sbjct: 337 EATLRRTEAGFHLLIEGFPDPVVVH-ANLQVLYANPAAVRYLGHEGQDGLVGLPLQRLLL 395

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHD 560
                 +  +++E  S  L     +      K+ + +   I+   + F           D
Sbjct: 396 PADHDALVRHVSEARS-GLTSVRSQDVTLLRKDGQQVVADIVTLGMTFEGWPALVTIARD 454

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV----IKNQRFG 616
            +E KQ + +L  + ++A           A ++HE+  PL+ +I   E     ++   F 
Sbjct: 455 FTERKQMQARLMLSDRMA-----SMGTLSAGIAHELNNPLSYVIANLEFVHATLQPAEFD 509

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
           P   P + +  +        V  IV  L   S++E  +         L   +     +  
Sbjct: 510 PARVPEWRQVLDEAREGAERVRQIVRQLKTFSRVEEERQEQVE----LHRVLDSVAQMAT 565

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG----GQIIISTTHT 732
               + R  +   +   +P I  +   + Q+ LN++ NA H  P G     +I ++T   
Sbjct: 566 SEV-KHRARLVKQYGP-LPAITGNDGKLFQVFLNLVINAAHAIPEGCVEDHEIRLATFED 623

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
                ++ VRDTG G+    L +  +PF         +G GTGLGL +   +V A+ G  
Sbjct: 624 ERGWAVVEVRDTGGGIRPENLSRIFEPFFTTKP----QGVGTGLGLSICLTLVRAHGGDI 679

Query: 793 YIFSTPAKGTLIEIIFP 809
            + ST  KGT+  ++ P
Sbjct: 680 TVESTVGKGTVFRVMLP 696



 Score = 58.1 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/177 (10%), Positives = 49/177 (27%), Gaps = 4/177 (2%)

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
                        G              +E + ++   + +     +  ++  G      
Sbjct: 6   VPGPGQGTRAGPVGTSQGPKPLARVGSDVEADALRYRLLAKHLRATVFQVDARGHFTVLG 65

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
            +  +L G  V   L       L        + +L  + S +     +++ + +      
Sbjct: 66  ASWEELTGLKVASSLGSSLVEALHPVDRERASGWLRALASREQESLRQEVRILTRTGTCW 125

Query: 539 LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
           + L                + DISE ++ ++ ++  ++        +   L    HE
Sbjct: 126 VELFAQSSPSIAGE-VVGLLTDISERRRAQDAVTTRERCLAAVVEVQRRLLT---HE 178


>gi|296532186|ref|ZP_06894941.1| possible PAS/PAC sensor hybrid histidine kinase [Roseomonas
           cervicalis ATCC 49957]
 gi|296267488|gb|EFH13358.1| possible PAS/PAC sensor hybrid histidine kinase [Roseomonas
           cervicalis ATCC 49957]
          Length = 835

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 102/566 (18%), Positives = 197/566 (34%), Gaps = 39/566 (6%)

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
           + ++  +  S  +     E  +T       +          ++     ++ R    L   
Sbjct: 40  RAQREAMDASHRTVTLMLELRNTAFEAVAARNVTLSNPGTEAETLLRPVTERLQAQLGRL 99

Query: 315 FDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
               ++   E+     +     S      A+              +  A    + L A  
Sbjct: 100 HAVMQDTALESAAAAALERSAQSLVARLEASLRLQRSAGLDYAMLLREASAERSRLTAQI 159

Query: 375 LS--DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
            +  +    +     R   T +     +  +       LA+  +              + 
Sbjct: 160 DAMIEAERAELAAFNRHYLTRVEQIRVMILLLALLAALLAVAAVWGLNRYLTSSASRYDT 219

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
           +   +  +    R++  E  +L SIL+   D I +++ E  I   N A ++ F  P  ++
Sbjct: 220 LAEANRASGEANRRLAEERGRLQSILDHARDPILLVDGEERIDLANAAAAEQFRLPPAEL 279

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
           +       +                        +        +       + +     + 
Sbjct: 280 IGLRIRSLVPGYGLR------------------QGEVQARRADGTAFPAELSVGS-TAAG 320

Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
                + D+SE                +  + KS+F++ VSHE+RTPLT+I     ++  
Sbjct: 321 ATVCILRDVSER--------------HRLDALKSEFVSTVSHELRTPLTSIRASLGLVMG 366

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
              G L  P   E      ++   ++ +VND+LDI KIESG+++   E VS    + +A+
Sbjct: 367 GVAGALPEP-VRELLGIAAKNAERLVLLVNDILDIEKIESGRLDFQRERVSARALLQQAV 425

Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
           +    Y  +  +            + AD++ ++Q+  N+LSNA  F+P GG + +S    
Sbjct: 426 AANAAYGAQFEVRFALDEGPEDALVYADVQRIQQVLANLLSNAAKFSPRGGVVEVSLGV- 484

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
                  RVRD G G+      +  + F Q   S   +  GTGLGL ++KA+V+ + G  
Sbjct: 485 DAGNAFFRVRDHGRGIPPEFRSRIFQRFAQADASDARQKGGTGLGLSISKAIVEHHAGSI 544

Query: 793 YIFSTPAKGTLIEIIFP--LYDTSHP 816
                   GT+     P  +   S P
Sbjct: 545 GFEEAEGGGTVFCFALPRLVERLSQP 570



 Score = 38.9 bits (89), Expect = 3.7,   Method: Composition-based stats.
 Identities = 33/395 (8%), Positives = 94/395 (23%), Gaps = 23/395 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D    +   +    +       ++IG+R+  +     +                   + 
Sbjct: 255 VDGEERIDLANAAAAEQFRLPPAELIGLRIRSLVPGYGLRQGEVQARRADGTAFPAELSV 314

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                G  + +  D++              +   +  V+     P    +          
Sbjct: 315 GSTAAGATVCILRDVS------ERHRLDALKSEFVSTVSHELRTPLTSIRASLGL----- 363

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
            +  G +    E        +     R+   V+ + +    +   L  ++  +       
Sbjct: 364 -VMGGVAGALPEPVRELLGIAAKNAERLVLLVNDILDIEKIESGRLDFQRERVSARALLQ 422

Query: 269 LPEQEDFHTINLNQYTKKQYFGT----LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
                +       +       G     +  + +   + L++    +       G      
Sbjct: 423 QAVAANAAYGAQFEVRFALDEGPEDALVYADVQRIQQVLANLLSNAAKFSPRGGVVEVSL 482

Query: 325 TVDKCPIPFFVYSHGNLF--YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
            VD     F V  HG                     D    GG    L   K    +   
Sbjct: 483 GVDAGNAFFRVRDHGRGIPPEFRSRIFQRFAQADASDARQKGGTGLGLSISKAIVEHHAG 542

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP-----FEKANQFPENMPQNGIEPED 437
            +    ++         L  +       L             + +     + ++ ++ + 
Sbjct: 543 SIGFEEAEGGGTVFCFALPRLVERLSQPLPAAPGARRRALIVEDDADIARLLRHMLDDDG 602

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREG 472
            D+ +     E       +  +A +  + + + +G
Sbjct: 603 WDSEVAHDAAEAFAWLDRARFDAMTLDLMLPDEDG 637


>gi|269966474|ref|ZP_06180558.1| putative histidine kinase [Vibrio alginolyticus 40B]
 gi|269828931|gb|EEZ83181.1| putative histidine kinase [Vibrio alginolyticus 40B]
          Length = 1060

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 84/264 (31%), Positives = 135/264 (51%), Gaps = 12/264 (4%)

Query: 559 HDISEWK--QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
             +S  K  Q K     AK  A K S  KS FLA +SHEIRTPL  +IG SEV+ +    
Sbjct: 375 RMLSRLKLTQAKEDAEQAKDDAIKASKAKSSFLANMSHEIRTPLNGVIGISEVLSDTSLT 434

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
                   +Y + I+ S  L+L ++ND+LD SKIESG + +      + E++ +  S++ 
Sbjct: 435 AT----QRDYVDTIETSSQLLLSLINDVLDFSKIESGMLLISPHSTCVRESIYDIASIIS 490

Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSN 734
             A EK I ++ + + N P  ++ D   ++Q+ +N +SNA+ FT  G  ++ + T    N
Sbjct: 491 PKAKEKGIDVQVNISRNTPYHVMLDDHRIRQVVMNFMSNAVKFTEQGSVELSVITREIKN 550

Query: 735 EE--VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
            E  +   V+D+G+G+   + +K   PF Q  NS   +  GTGLGL ++  +V+   G+ 
Sbjct: 551 GEAVIEFSVKDSGIGIDAQQQKKIFAPFAQEDNSTTRQFGGTGLGLAISTQLVELMGGEI 610

Query: 793 YIFSTPAKGTLIEIIF--PLYDTS 814
            + S   KG+        P+    
Sbjct: 611 QLESEKGKGSRFFFELTAPVVTQE 634


>gi|268679228|ref|YP_003303659.1| ATP-binding region ATPase domain protein [Sulfurospirillum
           deleyianum DSM 6946]
 gi|268617259|gb|ACZ11624.1| ATP-binding region ATPase domain protein [Sulfurospirillum
           deleyianum DSM 6946]
          Length = 1068

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 79/256 (30%), Positives = 135/256 (52%), Gaps = 10/256 (3%)

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           +    ++  KK AE+ S+ KS FLA +SHEIRTPL  IIGF+E++KN       +    E
Sbjct: 369 KAIENIAKEKKNAEEASAAKSIFLANMSHEIRTPLNGIIGFTELLKNSDL----DEEKRE 424

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           + + I++S   +L I+N++LD+SK+ES K+ +     S  +    A+ +    A EK I 
Sbjct: 425 FVDVIEKSSENLLAIINNILDLSKVESNKIEIDESLFSPIDEFENAVEVYGPKAAEKNIQ 484

Query: 686 IRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-----EVIL 739
           +      ++   +  D   +K++ +N++SNA+ FTP+ GQI +      N      +V+ 
Sbjct: 485 LSLYMDPSLHNYLKGDSVKIKEVLINLMSNAVKFTPNNGQITVEIKRLENAPLDKAKVLF 544

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            VRD+G+G+   ++E     F Q  ++   +  GTGLGL ++   +    GK  + S   
Sbjct: 545 SVRDSGIGINKEKIEGIFDAFNQADSTITRKFGGTGLGLTISSKYIALMGGKLDVESEEG 604

Query: 800 KGTLIEIIFPLYDTSH 815
           +G+    I  L ++S 
Sbjct: 605 QGSRFFFILDLPESSA 620


>gi|160890817|ref|ZP_02071820.1| hypothetical protein BACUNI_03262 [Bacteroides uniformis ATCC 8492]
 gi|156859816|gb|EDO53247.1| hypothetical protein BACUNI_03262 [Bacteroides uniformis ATCC 8492]
          Length = 1034

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 84/396 (21%), Positives = 171/396 (43%), Gaps = 28/396 (7%)

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATS---------DGIAIINREGIILSTNRAV 481
           +    +    +  +  +     +L   L             +G+     + I+   N   
Sbjct: 503 DVFAVDITARKDAENTLREINKKLEMTLGIARIIPWRWDLKEGLIYCEAQKILDHMNFTK 562

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
            K     V+ I    +   +       M+H    ++S  L+   E+  + +  E + ++ 
Sbjct: 563 EKNSTVQVDIIKASEYFRKIHPEDFERMHHVHENLISGKLQHIKEEYRIITEVEGRKITD 622

Query: 542 RI---IIKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
            +    +      + Y      ++  I+E K+++  L  A++ A++    KS FLA +SH
Sbjct: 623 WMETNAVIDQRDKNGYPISLVGSLLLITERKRQEEALIRAREKAQESDRLKSAFLANMSH 682

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           EIRTPL AI+GFS ++              E+ + I+ +  L+L +V+++LD+SKIE+  
Sbjct: 683 EIRTPLNAIVGFSSLL----TATENETERKEFISIIETNNQLLLQLVSNILDLSKIEANT 738

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714
           +  +++ V L++   +  + V+       + ++      +  +  +   + Q+ +N+L N
Sbjct: 739 LEFNYQNVDLNQLAKDVENTVRGRLQT-GVALQFVPEVPVCYVQTEHNRLSQVLINLLVN 797

Query: 715 AIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           A  FT  G +I+        EE+   V+DTG+G++    +K  + F ++        +GT
Sbjct: 798 AAKFTEKG-EIMFGYKIR-GEELYFYVKDTGIGISLENQKKIFERFTKVNTFI----QGT 851

Query: 775 GLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFP 809
           GLGL + K +V    G+  + S    KG+      P
Sbjct: 852 GLGLSICKNIVTKMKGRIGVESEGEGKGSTFWFTIP 887


>gi|312879447|ref|ZP_07739247.1| PAS/PAC sensor hybrid histidine kinase [Aminomonas paucivorans DSM
           12260]
 gi|310782738|gb|EFQ23136.1| PAS/PAC sensor hybrid histidine kinase [Aminomonas paucivorans DSM
           12260]
          Length = 809

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 85/643 (13%), Positives = 176/643 (27%), Gaps = 51/643 (7%)

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH-----LRMKNKVSSLTEYYAHKDDV 253
                   L +        +                           +          + 
Sbjct: 53  AARSLQGALLDAIPAPVFYKDLSGRYLGVNRAFAEFQGCPAGAFVGKTVYDVAPPELAEQ 112

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
              +   L    E  +   +              +   L+         +      +   
Sbjct: 113 YHAKDLELFRDGEMQVYASQ-MRNAQGELRDVVFHKAPLRGADGAVRGLIGVIQDVTERN 171

Query: 314 YFDEGENL----TPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
             +E            VD  P   ++    G     NP F      +  + +        
Sbjct: 172 RAEEALARSQGFLRTLVDTIPDLIWLKDPQGVFLSCNPPFERFLGAQEEEILGRR---DE 228

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
                  +        +   +    +     +     +         I     +     +
Sbjct: 229 DFLDRDQAAFFREHDRLAAEAGGPRVNEEWLVFR---DGSYQGLFETIKTPMWDLEGNLV 285

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
              GI  +    +  +  +        S +E    GI + + +  IL  N    ++ GY 
Sbjct: 286 GVLGISRDITAHKRTEEALRAGEELWRSYVENAPYGIFVTDGKRRILQANAEACRMSGYS 345

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            E++L +     L  ++         E+L         +    +T+  +     +   +L
Sbjct: 346 EEELLARSLPDLLVPDSLPEALSAFQEVLETGRSY---RELGFATRAGEPRRWSLAEVRL 402

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS--DFLARVSHEIRTPLTAIIGF 606
             +  +     DI+   + + +    ++        +S       V+H+    L  I+G 
Sbjct: 403 SPT-RFLGYARDITARLRAQREREQLREQLLHSQKMESVGRLAGGVAHDFNNMLGVILGQ 461

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
           +E+   +                I ++     D+   LL  ++ ++       + + L+E
Sbjct: 462 AEIALARTEPSNP---LHGALKEIRKAAARSADLTRQLLAFARKQASA----PQVLDLNE 514

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726
            V   + ++      + I +          +  D   V QI  N+  NA       G+I+
Sbjct: 515 TVEGLLGIL-HRLLGEDIRLDW-IPGEGGTVRMDPAQVDQILANLCVNARDAIDGVGRIV 572

Query: 727 ISTTHT---------------SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           I+T  T                 E  +L V D G GM         +PF          G
Sbjct: 573 IATARTTLREAPKEPVYGVAVPGEYAVLSVGDDGFGMDEETRSHLFEPFFTTKVP----G 628

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           +GTGLGL     +V  N G   + S P KG+   +  P +D +
Sbjct: 629 QGTGLGLATVYGLVTQNRGFLQVDSAPGKGSTFRVYLPWFDEA 671



 Score =  112 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 42/387 (10%), Positives = 91/387 (23%), Gaps = 29/387 (7%)

Query: 79  IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLL 137
                   +  D  G    ++    +  G  A   +G  + DV+     +       +L 
Sbjct: 63  DAIPAPVFYK-DLSGRYLGVNRAFAEFQGCPAGAFVGKTVYDVAPPELAEQYHAKDLELF 121

Query: 138 KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG 197
           +        + +   +G      +     P+   +    G    G++      N      
Sbjct: 122 RDGEMQVYASQMRNAQGELR--DVVFHKAPLRGADGAVRGL--IGVIQDVTERNRAEEAL 177

Query: 198 KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP--PHLRMKNKVSSLTEYYAHKDDVLK 255
            R       L +       ++  +    S   P        + ++    +      D   
Sbjct: 178 ARSQGFLRTLVDTIPDLIWLKDPQGVFLSCNPPFERFLGAQEEEILGRRDEDFLDRDQAA 237

Query: 256 --TEKYPLLTSEESSLPEQEDFHTINLNQY-TKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
              E   L          +E     + +     +     + +        L      +  
Sbjct: 238 FFREHDRLAAEAGGPRVNEEWLVFRDGSYQGLFETIKTPMWDLEGNLVGVLGISRDITAH 297

Query: 313 AYFDEGENLTPET----VDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
              +E      E     V+  P   FV      +  AN     ++ Y   + +     L 
Sbjct: 298 KRTEEALRAGEELWRSYVENAPYGIFVTDGKRRILQANAEACRMSGYSEEELLAR--SLP 355

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
            LL    L +  +                     + +     + A     +  A      
Sbjct: 356 DLLVPDSLPEALSAFQ-----------EVLETGRSYRELGFATRAGEPRRWSLAEVRLSP 404

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQL 454
               G   +       +R+ E    QL
Sbjct: 405 TRFLGYARDITARLRAQREREQLREQL 431



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 34/310 (10%), Positives = 76/310 (24%), Gaps = 13/310 (4%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL---HIDPNNHIGDLLKRQN 141
             W  D  G     +    + +G    +++G R  D  D         ++ +    +   
Sbjct: 194 LIWLKDPQGVFLSCNPPFERFLGAQEEEILGRRDEDFLDRDQAAFFREHDRLAA--EAGG 251

Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
               +  L   +G+   +   +   P++       G  G  I              +  +
Sbjct: 252 PRVNEEWLVFRDGSYQGLFETIK-TPMWDLEGNLVGVLG--ISRDITAHKRTEEALRAGE 308

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
           + +    E       V   K  I          RM           +  D ++       
Sbjct: 309 ELWRSYVENAPYGIFVTDGKRRILQAN--AEACRMSGYSEEELLARSLPDLLVPDSLPEA 366

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
           L++ +  L     +  +       +    +L         +L +    +           
Sbjct: 367 LSAFQEVLETGRSYRELGFATRAGEPRRWSLAEVRLSPTRFLGYARDITARLRAQREREQ 426

Query: 322 TPETVDKCP--IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
             E +            + G     N    ++     +  +      + L  A K     
Sbjct: 427 LREQLLHSQKMESVGRLAGGVAHDFNNMLGVILGQAEI-ALARTEPSNPLHGALKEIRKA 485

Query: 380 AIKPVMLYRS 389
           A +   L R 
Sbjct: 486 AARSADLTRQ 495


>gi|291543512|emb|CBL16621.1| PAS domain S-box [Ruminococcus sp. 18P13]
          Length = 549

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 78/364 (21%), Positives = 155/364 (42%), Gaps = 28/364 (7%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           R++  +  +  +I E   +G  I++R+  +LS N +  +L G   + +L +        N
Sbjct: 214 RELRRKQQEFAAITENMQEGFLILDRDTNVLSYNTSALRLLGAD-DAVLGQSVLKL---N 269

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564
                 H +   ++ +           +  +     +   + +        L + D++E 
Sbjct: 270 ASRSFRHAVERSIAGE-----HYERTMNHDDCHYHLIANPVHQEEEIIGAVLIILDVTEK 324

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
            Q +              + + +F A VSHE++TPLT+I GF+E+I +    P       
Sbjct: 325 DQRE--------------NLRREFTANVSHELKTPLTSISGFAEIILSGLAKP---EDIT 367

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
            +A+ I      ++ +V D++ +S+++   + +  EPV L E        +   A +K I
Sbjct: 368 HFASNIYAEAQRLITLVGDIIKLSQMDENSIPVGKEPVDLREIADSVRERLAHEAAKKHI 427

Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744
            +    ++    +    + + ++ LN+  NAI +   GG++ I+ +      V L V DT
Sbjct: 428 TLAVHGSHE--TVSGVPQILDEMVLNLCDNAIKYNVEGGRVDITVSRDPRGAVFLSVADT 485

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G+   + E+  + F ++  S      GTGLGL + K     +     + S   KGT I
Sbjct: 486 GIGIPQSDRERVFERFYRVDKSHSKEIGGTGLGLSIVKHGAAYHGATLALESELDKGTTI 545

Query: 805 EIIF 808
            + F
Sbjct: 546 TMTF 549


>gi|182415728|ref|YP_001820794.1| response regulator receiver sensor hybrid histidine kinase
           [Opitutus terrae PB90-1]
 gi|177842942|gb|ACB77194.1| response regulator receiver sensor hybrid histidine kinase
           [Opitutus terrae PB90-1]
          Length = 758

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 87/287 (30%), Positives = 137/287 (47%), Gaps = 10/287 (3%)

Query: 534 KEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
            +E    +R    +L  ++       +I      +  L  AK  AE     KS FLA +S
Sbjct: 181 ADELEARVRARTAELESANALL--HEEIGRRMLVELDLKRAKDAAEAADRAKSVFLANMS 238

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HEIRTP+  ++G + ++         NP   + A  + +SG  +L I+ND+LD SKIE+G
Sbjct: 239 HEIRTPMNGVLGMANLLLATPL----NPEQHDLAETLCQSGESLLTIINDILDFSKIEAG 294

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNIL 712
           +M L      L + +  A+ L    A  K + +  +    +PR +  D   ++QI LN++
Sbjct: 295 RMELEAIDFDLADNLELALDLHAEAAARKHLELVVNIDPAVPRHVRGDPGRLRQILLNLV 354

Query: 713 SNAIHFTPSGGQII-ISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
            NAI FT  G  ++ ++  H     V+LR  V DTG+G+  +  EK  +PF Q   S   
Sbjct: 355 GNAIKFTEKGEVVVKVTVDHNWPNRVLLRFAVTDTGIGIPEWVQEKLFQPFVQADTSTTR 414

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           R  G+GLGL + K + +   G   + S P +G+       L    HP
Sbjct: 415 RFGGSGLGLVICKRLAELMSGSIGVESKPNEGSTFWFTVELKHAFHP 461


>gi|15640739|ref|NP_230369.1| phosphate regulon sensor protein [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121590895|ref|ZP_01678218.1| histidine protein kinase PhoR [Vibrio cholerae 2740-80]
 gi|153818832|ref|ZP_01971499.1| histidine protein kinase PhoR [Vibrio cholerae NCTC 8457]
 gi|153823124|ref|ZP_01975791.1| histidine protein kinase PhoR [Vibrio cholerae B33]
 gi|227080899|ref|YP_002809450.1| histidine protein kinase PhoR [Vibrio cholerae M66-2]
 gi|229505664|ref|ZP_04395174.1| phosphate regulon sensor protein phoR [Vibrio cholerae BX 330286]
 gi|229510664|ref|ZP_04400143.1| phosphate regulon sensor protein phoR [Vibrio cholerae B33]
 gi|229513139|ref|ZP_04402605.1| phosphate regulon sensor protein phoR [Vibrio cholerae TMA 21]
 gi|229517786|ref|ZP_04407230.1| phosphate regulon sensor protein phoR [Vibrio cholerae RC9]
 gi|229608682|ref|YP_002879330.1| phosphate regulon sensor protein [Vibrio cholerae MJ-1236]
 gi|254847861|ref|ZP_05237211.1| histidine protein kinase PhoR [Vibrio cholerae MO10]
 gi|255744532|ref|ZP_05418483.1| phosphate regulon sensor protein phoR [Vibrio cholera CIRS 101]
 gi|262161334|ref|ZP_06030445.1| phosphate regulon sensor protein phoR [Vibrio cholerae INDRE 91/1]
 gi|298499142|ref|ZP_07008949.1| phosphate regulon sensor protein [Vibrio cholerae MAK 757]
 gi|9655163|gb|AAF93885.1| histidine protein kinase PhoR [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121547260|gb|EAX57383.1| histidine protein kinase PhoR [Vibrio cholerae 2740-80]
 gi|126510614|gb|EAZ73208.1| histidine protein kinase PhoR [Vibrio cholerae NCTC 8457]
 gi|126519341|gb|EAZ76564.1| histidine protein kinase PhoR [Vibrio cholerae B33]
 gi|227008787|gb|ACP04999.1| histidine protein kinase PhoR [Vibrio cholerae M66-2]
 gi|229344501|gb|EEO09475.1| phosphate regulon sensor protein phoR [Vibrio cholerae RC9]
 gi|229350032|gb|EEO14986.1| phosphate regulon sensor protein phoR [Vibrio cholerae TMA 21]
 gi|229350629|gb|EEO15570.1| phosphate regulon sensor protein phoR [Vibrio cholerae B33]
 gi|229357887|gb|EEO22804.1| phosphate regulon sensor protein phoR [Vibrio cholerae BX 330286]
 gi|229371337|gb|ACQ61760.1| phosphate regulon sensor protein phoR [Vibrio cholerae MJ-1236]
 gi|254843566|gb|EET21980.1| histidine protein kinase PhoR [Vibrio cholerae MO10]
 gi|255737563|gb|EET92957.1| phosphate regulon sensor protein phoR [Vibrio cholera CIRS 101]
 gi|262029084|gb|EEY47737.1| phosphate regulon sensor protein phoR [Vibrio cholerae INDRE 91/1]
 gi|297543475|gb|EFH79525.1| phosphate regulon sensor protein [Vibrio cholerae MAK 757]
          Length = 433

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 75/402 (18%), Positives = 153/402 (38%), Gaps = 30/402 (7%)

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDT-RINKRKMEIEVMQLCSILEATSDGIAI 467
           ++           +                   R  ++++   + +  +  E+  D + +
Sbjct: 54  SAWLWDEKRLTPPSGTGNWESLFNGIYRLQQRHRKKRKELTNLIRRFRNGAESLPDAVVV 113

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
              EG I+  NR    L G+   D   +P +  L          ++  +   D    LE 
Sbjct: 114 FRSEGNIVWCNRLAQHLLGFRWPDDAGQPISNLLRTP------DFIKYLKKDDFTDPLEM 167

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
                +       L + I        + + + D+++ KQ +                + +
Sbjct: 168 ----RSPLNSDRMLELRIVPYTEGE-HLMVVRDVTQLKQLEG--------------MRRN 208

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           F A VSHE+RTP+T + G+ E+   +    L  P + +    +    N +  +VN LL +
Sbjct: 209 FFANVSHELRTPMTVLQGYLEM--TEDPDVLAGPMWSKAHGVMTEQLNRMNGLVNQLLTL 266

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707
           SKIE+  M    + V +   +          + E +  +      ++ ++LAD   ++  
Sbjct: 267 SKIEASPMVELDQVVDVPAMLEVLEKEAVSLSGEAQHKLHFEVDKSL-KVLADEDQLRSA 325

Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
             N++ NA+ +TP G QI +   + + +   L V D G G+    L +  + F ++  ++
Sbjct: 326 ISNLVYNAVKYTPPGAQIDVRW-YRTGKGACLEVEDKGEGIEPQHLHRLTERFYRVDKAR 384

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
                G+GLGL + K  +  +     I+S    G+    + P
Sbjct: 385 SRDTGGSGLGLAIVKHALAHHDTHLDIYSKVGVGSKFSFVLP 426


>gi|239623825|ref|ZP_04666856.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239521856|gb|EEQ61722.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 1081

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 111/752 (14%), Positives = 252/752 (33%), Gaps = 60/752 (7%)

Query: 95  LKEISEELPKTIGNY-----AFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
              I++ + + +G         ++ G     +           I   L R   +  +  +
Sbjct: 56  FYFINQRMLRYLGYLDEKEFVEEIDGCISNCIHPEDRALAGQSIAAQLDRGEEYTVEYRM 115

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN-DPRALGKRLDKKFSHLH 208
              +G+  Y+ I        + +   +      +             +    +     + 
Sbjct: 116 RKKDGS--YIWIHDTGHKTVAEDGRPAITS---VCSDITAQKLAQLEVMNIYNNIPGAVF 170

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
             +        +  D                 + ++     +D  +  EK        ++
Sbjct: 171 RCRFDPDFSVIDANDGLFDFLGYSREEFAAMGNRMSAVIYPEDLAVMEEKLRAQLKHGNT 230

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKES----FEYLSHRNHPSLSAYFDEGENLTPE 324
           +  +      N                + E         +           +  E     
Sbjct: 231 IQNENRLVCKNGQVKWISIKAQLFTGENGEQYFYCVFVDATDEKNVQERVKELYEKELLY 290

Query: 325 TVDKCPIPFFVY--------SHGNLFYANPSFLLLTKYKSVDDIEIAGG--LSTLLDAPK 374
             +       V            +    + + +        + +    G  +        
Sbjct: 291 FAELSSEGGLVQGRLNVTQNRLESHASTDDASVAEIGDTYEEAVAKLAGSAVDAAYGRKI 350

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
           L D    + +  Y S +T      +  +I+     S   +       N    ++      
Sbjct: 351 LHDLQRERVLAGYASGKTTYHFDFQRRSIRR---GSFWCSASLRFCLNPESGDIICFFYT 407

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII-LSTNR--------AVSK-L 484
            +  +  + ++ +   + +L    +  ++     +    + +  N+           + +
Sbjct: 408 FDVTEKMVQEQ-LLYRIAELDY--DIVTEIDIQEDTHRPVSIRCNQKEQVPKPGRFQESI 464

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS-LDLRQTLEKITLGSTKEEKLLSLRI 543
            G   + + +     +L++     +  +L +  S   + +  ++  +   K  ++  +  
Sbjct: 465 RGIAAQCMEKAASEEYLQKLDYQYIKDHLEKEDSYSFIVEMRDRAGVMRVKRFQVFYINK 524

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEK----NKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
            + ++  S        D+++  +++      L+ A   AE+ ++ KSDFL+R+SHEIRTP
Sbjct: 525 ALGRVGMSR------TDVTDVVRKEQRQKEDLAAALVAAEQANAAKSDFLSRMSHEIRTP 578

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           + AIIG S +          + +  +  + I  S   +L ++ND+LD+S+IESGKM L  
Sbjct: 579 MNAIIGMSTIAAQSIG---DDEQVEDCISKIGISSRFLLSLINDILDMSRIESGKMLLKN 635

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHF 718
           E +  ++ ++   S+    A  + +         +      D   ++Q+ +NILSNAI F
Sbjct: 636 EKIPTEDFLNGINSICYAQAAARGVDYECIVDPVLDDYYMGDAMKLQQVLINILSNAIKF 695

Query: 719 TPSGGQIIISTTHTS----NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           T  GG++ +S         +  +   V DTG+GM    +    +PF Q          G+
Sbjct: 696 TKEGGKVTLSAALRRKTKNDAVLRFIVNDTGIGMGEEFIPHIFEPFSQESTGTTTPYGGS 755

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           GLGL ++K++VD   GK  + S    GT   +
Sbjct: 756 GLGLAISKSIVDMMDGKINVRSIKGIGTEFTV 787



 Score = 43.9 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 28/213 (13%), Positives = 65/213 (30%), Gaps = 23/213 (10%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFK--MIGMRLCDVSDILHIDP-NNHIGDLLKRQN 141
           F    D    + + ++ L   +G    +   +G R+  V     +      +   LK  N
Sbjct: 170 FRCRFDPDFSVIDANDGLFDFLGYSREEFAAMGNRMSAVIYPEDLAVMEEKLRAQLKHGN 229

Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRG----FGIVHVNRVDNDPRALG 197
           T   +  L    G   ++ I         + + F+G  G    + +      + + +   
Sbjct: 230 TIQNENRLVCKNGQVKWISI---------KAQLFTGENGEQYFYCVFVDATDEKNVQERV 280

Query: 198 KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257
           K L +K          + +    +  +   +      R+++  S+     A   D  +  
Sbjct: 281 KELYEKELL-------YFAELSSEGGLVQGRLNVTQNRLESHASTDDASVAEIGDTYEEA 333

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG 290
              L  S   +   ++  H +   +       G
Sbjct: 334 VAKLAGSAVDAAYGRKILHDLQRERVLAGYASG 366


>gi|297582942|ref|YP_003698722.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus selenitireducens MLS10]
 gi|297141399|gb|ADH98156.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus selenitireducens MLS10]
          Length = 807

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 105/591 (17%), Positives = 223/591 (37%), Gaps = 41/591 (6%)

Query: 242 SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301
           S++  Y  +DD + +         +     + +    N     +++      + ++E+ E
Sbjct: 238 SVSSPYTKRDDEIGSLSRSFEQMSKHIQNSEYELLAQNEEMKAQQEALEEYLSITEEAKE 297

Query: 302 YLSHRNH-PSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDI 360
            LS  NH   + A  +  ++            F         Y  P +L  T   +    
Sbjct: 298 KLSWMNHFNEMLALNNSRQDHLRAAFKFINQRFSFDKAAIRLYGTP-YLHATGLNTDQLT 356

Query: 361 EIAGGLSTLLDAPKLSD------NNAIKPVMLYRSDRTCIAASARLHTIQWNR-ENSLAM 413
           ++   +   L   K  D            + +     T    +  +  +Q         M
Sbjct: 357 DLDERMENRLIRLKDEDYVLMKREGVTDELGIRNGTVTVYELTVPVLNMQKQHIGYFTGM 416

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
            F    K     +     G     ++       ++       +I+E+ ++GI +++ +G 
Sbjct: 417 IFDNEIKETAVDDLRRILGQLEGALEVAHANELIKESKEINQAIIESINEGIQLVSNDGT 476

Query: 474 ILSTNRAVSKLFGYP-----VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528
           +L+ N    +L G        +D+L+  F      ++           +        +  
Sbjct: 477 LLAYNEYSCELVGCKLKDSLDQDVLQHKFNWVHPFSSQFEEPESFASFIIQATADMYDDF 536

Query: 529 TLGST-----KEEKLLSLRIIIKKLPFSS-CYSLTMHDISEWKQEKNKLSHAKKIAEKES 582
               T        + +++     ++   S        DI+                 +  
Sbjct: 537 KRFQTSAIIEGARRDIAIYSTSVRVGEESIGTVFVYRDITR--------------EAEVD 582

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
             K++ ++ V+HE+RTPL++I+GF+E + N+    +   R   Y   I      +  +VN
Sbjct: 583 RLKTELVSTVNHELRTPLSSIMGFTERMLNKD---VSEERRRVYLETILSESERLSQLVN 639

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702
           + LD+ KIES    +  EPV + +++ +A+S          + +  S  +   ++     
Sbjct: 640 NFLDLQKIESLPDEMDLEPVKISDSLRQAMSAFHPS-EHHELKVIDSLTDT--KVNGHSA 696

Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTS-NEEVILRVRDTGVGMTNYELEKAMKPFG 761
           S+ Q+ LN+LSNA  ++P GG I + T      + V++ + D G+G+   + ++    F 
Sbjct: 697 SLHQVFLNLLSNAQKYSPEGGTITVETELDDAKKNVLIHISDEGIGIAKKDHDRLFMKFS 756

Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
           +I +      +GTGLGL L+K +++A  G   + S   +G+   ++ PL +
Sbjct: 757 RIKDQHGGTIKGTGLGLALSKELMEAQGGDIRVRSEAGEGSTFTVVIPLKE 807


>gi|269962449|ref|ZP_06176799.1| histidine protein kinase PhoR [Vibrio harveyi 1DA3]
 gi|269832945|gb|EEZ87054.1| histidine protein kinase PhoR [Vibrio harveyi 1DA3]
          Length = 432

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 72/364 (19%), Positives = 149/364 (40%), Gaps = 29/364 (7%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           ++   + +  +  E+  D + +   EG I+  N+    L G+   +   +P +  +    
Sbjct: 92  ELTNLIRRFRNGAESLPDAVVVFRAEGNIVWCNKLAQHLLGFHWPEDSGQPISNLIRTPD 151

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
                +       L++R  L    +          L + I        + + + D+S+ K
Sbjct: 152 FIKYINKQDFSEPLEMRSPLNVERM----------LELRIVPYTEGE-HLMVVRDVSQLK 200

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           Q +                + +F A VSHE+RTP+T + G+ E+   +    +  P + +
Sbjct: 201 QLEG--------------MRRNFFANVSHELRTPMTVLQGYLEM--TEDPDMIVGPMWTK 244

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
               +    N +  +VN LL +SKIE+  M+   E V++   +          + + +  
Sbjct: 245 AHGVMTEQLNRMNSLVNQLLTLSKIEAAPMHELEEVVNVPSMLEVLEKEAVSLSGDDQHQ 304

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           ++    +++ R+L D   ++    N++ NA+ +TP G  I +    T+     L V D+G
Sbjct: 305 LKFDVDSSL-RVLGDDDQLRSAISNLVYNAVKYTPPGAHINVRWYQTAQG-ACLEVEDSG 362

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
            G+    L +  + F ++  ++     G+GLGL + K  +  +     I+S    G+   
Sbjct: 363 DGIEPQHLHRLTERFYRVDKARSRDTGGSGLGLAIVKHALSHHDSHLEIYSEVGVGSKFS 422

Query: 806 IIFP 809
            I P
Sbjct: 423 FILP 426


>gi|322421743|ref|YP_004200966.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           M18]
 gi|320128130|gb|ADW15690.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           M18]
          Length = 345

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 72/366 (19%), Positives = 163/366 (44%), Gaps = 29/366 (7%)

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
           E +      +LE    G   ++  G++L  NR   ++      +++ K   +        
Sbjct: 3   EEQQNIAARLLEEIDSGAVYLDASGMVLLMNRRAEEILHVGRSEVIGKRVDML------P 56

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQE 567
           +       +      + +E        +  ++ +R ++      +     + DIS  K+E
Sbjct: 57  LRTPVYRVLSENAQDEPVEVSI-----DGSVIQVRSLLLGGMQPAGELFQLRDISSDKKE 111

Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
           K                + +F+A ++H++++PLT I+G+ + +  +    + +P    + 
Sbjct: 112 K--------------RQREEFVAMMTHDLKSPLTVIMGYMQALMGEMPSKV-DPSLHLFV 156

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
             +D+S   +L +++D+LD  ++E+G + +  +P      +       +  A        
Sbjct: 157 KEMDKSAVKMLSMIDDVLDAYRLEAGLLQIDRQPCDARSLLDGCCRDGEQEAAVHGSYFL 216

Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747
           +   + IP +  D + + ++  N++ NA+ FTP  G I +++    N  ++++V DTG+G
Sbjct: 217 SDICDGIPTLDLDWKQITRVFANLIGNAVKFTPRRGTISVTSAIEDN-CLLVQVTDTGIG 275

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           +   EL +    + +   S     +GTGLGL ++KA+V+A+ G   + S   KG+   ++
Sbjct: 276 IPEDELPRIFNKYFRA--SGAHGFKGTGLGLTISKAIVEAHGGSIRVESAAGKGSRFSVL 333

Query: 808 FPLYDT 813
            PL++ 
Sbjct: 334 LPLHNE 339


>gi|315497728|ref|YP_004086532.1| multi-sensor hybrid histidine kinase [Asticcacaulis excentricus CB
           48]
 gi|315415740|gb|ADU12381.1| multi-sensor hybrid histidine kinase [Asticcacaulis excentricus CB
           48]
          Length = 1152

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 114/626 (18%), Positives = 239/626 (38%), Gaps = 34/626 (5%)

Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253
           +   + L    +   E+K    ++E+      ++      +R       +    A     
Sbjct: 107 KERQRVLPALLAQSPELKPQVDAIEERINLKMAELQRTMDIRRTQ---GMEAAAAEVGRH 163

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
           L      ++  E   +   E+       +   + +   + + +  +   +      +L  
Sbjct: 164 LGKNHMDIIRREIKEIEAAENARRQAGIRQRAEAFNTAILSTTATAILGVILTLTIALIV 223

Query: 314 YFDEGENLTPETVDKCPIPFFVYSHG--NLFYANPSF----LLLTKYKSVDDIEIAGGLS 367
                       +    +       G   L                 +S       GG+ 
Sbjct: 224 RRSTERQALQNWLSNGEVGLGAALSGDPALDEVGKRALSFLCDYLGAQSAAFYARDGGIL 283

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
                  +       P+ L   +      +A       +      ++          P +
Sbjct: 284 KQAATHGVP-AETALPLTLKLHEGVVGQVAAEGKIAVLSDLPDALLSV-GTSLGQWQPRH 341

Query: 428 MPQNGIEPEDVDTRINKR--KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
           +       +     + +     +I+   L ++LE +SD I++      + S N   ++  
Sbjct: 342 VVVAPAATDTQVDAVVEVGFMAKIDPATL-TLLERSSDIISVA-----VRSANYRATQ-- 393

Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
              +E+  R+   +  +     V N  L E         L          ++   L    
Sbjct: 394 QNLLEETQRQSEELQTQAEELRVNNEELEEQSRALKESHLRLE-------QQQAELEQTN 446

Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
            +L   +       D  +  +    ++   +  E+ S +KSDFLA +SHE+RTPL + + 
Sbjct: 447 VQLSEQARILEQQKD--DLNRSAADIALKAQELEQASRYKSDFLANMSHELRTPLNSSLI 504

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
            ++++ + R G L     +++A  I  SGN +L ++ND+LD+SKIE+G+M+++ EPVS  
Sbjct: 505 LAKLLADNRDGNLT-EEQVKFARTIQSSGNDLLALINDILDLSKIEAGQMDINAEPVSFR 563

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQ 724
              S+   + +  A EK +  R    + +P +  +D + ++Q+  N+LSNA+ FT  G  
Sbjct: 564 RLASDLTRMFEPLAGEKGLTFRVEAHDTLPDLFDSDRQRLEQVLKNLLSNALKFTERGSV 623

Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
           ++  +   +N +V   V DTG+G++  + +   + F Q  ++   +  GTGLGL +++ +
Sbjct: 624 VLRMSA--ANNKVHFAVSDTGIGISAEQQQSIFEAFRQADSTISRKYGGTGLGLSISREL 681

Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPL 810
                G   + S P +G++  +I PL
Sbjct: 682 SRLLGGHIELKSEPDEGSIFTLILPL 707


>gi|237714981|ref|ZP_04545462.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262409069|ref|ZP_06085614.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|229444814|gb|EEO50605.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262353280|gb|EEZ02375.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
          Length = 869

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 95/538 (17%), Positives = 185/538 (34%), Gaps = 37/538 (6%)

Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANP 346
               ++ N +ES   +  +    +     E  N               Y    ++ + N 
Sbjct: 349 IVWLMRANRRESKRRIQAQTRLLVQNKLVEQRNEFDNVFHSIRDGVITYDTDLHIHFTNR 408

Query: 347 SFLLLTKYKSVD--DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC--IAASARLHT 402
           S L +                  ++        +   K +    S      I   A +  
Sbjct: 409 SLLQMLHLPYEAGGRFYEGMMAGSIFKIYYNGQDILHKMLKQVASKGESVKIPQGAFMKE 468

Query: 403 IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
           +  ++   ++   +P    +             ++          E++       ++ +S
Sbjct: 469 VHSDKYFPVSGEIVPIRSKDAITGMALSARNISDE----------EMQKRFFDMAVDESS 518

Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVE--DILRKPFTVFLEQNTPSVMNHYLTEILSLD 520
                 + E       +   K  GY      ILR      +  +    +       L   
Sbjct: 519 IYPWQFDMETNCFIFPQGFLKRLGYDESVTTILRDEMDRTIHPDDLKEIRPLFNRAL-TG 577

Query: 521 LRQTLEKITLGSTKEEKLLSLRII---IKKLPFSSCY--SLTMHDISEWKQEKNKLSHAK 575
                           +          I  L   S Y        I  +K  + ++  A+
Sbjct: 578 EDSNTRLNFRQRNVNGEYEWWEYRSSVITGLTQDSLYNILGVCQSIQRYKTAEQEMREAR 637

Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
             A +    KS FLA +SHEIRTPL AI+GFS+++ +       +    ++   I+++  
Sbjct: 638 DKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDT--SGFTSEEIAQFIGTINKNCG 695

Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN-NI 694
           L+L ++ND+LD+S+IESG M   F   +L   +       +L      + +       + 
Sbjct: 696 LLLALINDILDLSRIESGTMEFMFAEHNLPLLLKTVHDSQRLNMPP-GVELVLRMPESDK 754

Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN---EEVILRVRDTGVGMTNY 751
             +  D   ++Q+  N+++NA  FT SG    I+  +  +       + V DTGVG++  
Sbjct: 755 KYLTTDNVRLQQVVNNLINNAAKFTSSG---FITFGYEDDEVPGYTRIFVEDTGVGISEE 811

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            +    + F ++ N      +G GLGL + + +++   G   + S   KGT   +  P
Sbjct: 812 GIRHIFERFYKVDNFT----QGAGLGLSICQTIIERLNGTISVTSEVGKGTRFTVRLP 865


>gi|218777944|ref|YP_002429262.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218759328|gb|ACL01794.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 782

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 87/609 (14%), Positives = 194/609 (31%), Gaps = 56/609 (9%)

Query: 237 KNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTI--NLNQYTKKQYFGTLQN 294
              +S L   + + +D     +  +    E+  P   + +       +   +     +  
Sbjct: 64  SEPISPLEHMHFYSEDGRLALESAIAECLETGKPFDLEVNRKTWRGREIWCRLTGEAVFE 123

Query: 295 NSKE---SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY-SHGNLFYANPSFLL 350
             +       +    +           E    + +   P   FV    G     N     
Sbjct: 124 EGEPKKVRGTFQDITSRKQAEIDLRSSEQKYHDYISHAPYGVFVTNEQGEYLEVNGEACR 183

Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
            T Y   + +      S  + +    +++        + D+   A       I+ + E  
Sbjct: 184 QTGYSEEELL------SMSILSLVPPESHEEGKAHFQKIDKNGKAY-GEFPLIRKDGEVR 236

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470
               F                G   +  D RI ++++      +  + +    G+   ++
Sbjct: 237 WWSVFATKLSE------TRFLGYTNDITDRRIMEQELRRRENLISRVFDILPVGLWFTDK 290

Query: 471 EGIILSTNRAVSKLFGYPV----EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
           +G +L  N    K++G       E+               +  +  L + ++  +    E
Sbjct: 291 KGQLLRGNPMGQKIWGGEPTVGQEEYGVFKARKLPSGEEVAPDDWALAKTVNQGVTILDE 350

Query: 527 K-ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH--DISEWKQEKNKLSHAKKIAEKESS 583
                    E++++               +  +   DI++ ++ + +    ++   +   
Sbjct: 351 MLEIEAFDGEKRVILNYTAPVLDHKGEVEAAVVVNLDITQRQKAEEEKQRLQRQLLQAQK 410

Query: 584 HKS--DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
            +S       V+H+    L  I+G +E+  +       +    E    I  +     ++ 
Sbjct: 411 MESVGRLAGGVAHDFNNMLGVIVGHAEMALD---ATAMDSEIREDLTEILDAAKRSANLT 467

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701
             LL  ++    K       ++++EAV+  + +++     + I +  + + ++  +  D 
Sbjct: 468 RQLLGFAR----KQTARPIVMNINEAVNSMLKMLRRLI-GENIELYWNPSPDVWPVEMDP 522

Query: 702 RSVKQIALNILSNAIHFTPSG-GQIII--------------STTHTSNEEVILRVRDTGV 746
             V QI  N+  N +     G G++ I              S   T  + V+L V D G 
Sbjct: 523 SQVDQILANLAVN-VKDAIQGIGRMTIATYKVCITNMKSPESADFTPGDYVVLEVGDNGK 581

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           GM    +    +PF          GEGTGLGL     +V  N G   + S   +GT+  I
Sbjct: 582 GMDEETMHMIFEPFFTTKG----VGEGTGLGLATVYGIVRQNKGFIKVESELGQGTVFRI 637

Query: 807 IFPLYDTSH 815
             P    + 
Sbjct: 638 YLPRSQKAE 646



 Score = 60.0 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/315 (9%), Positives = 83/315 (26%), Gaps = 21/315 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            +  +  G   E++ E  +  G    +++ M +  +      +        + +    YG
Sbjct: 165 VFVTNEQGEYLEVNGEACRQTGYSEEELLSMSILSLVPPESHEEGKAHFQKIDKNGKAYG 224

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +  L   +G   +  +            + S  R  G  +            +R +   S
Sbjct: 225 EFPLIRKDGEVRWWSVFAT---------KLSETRFLGYTNDITDRRIMEQELRRRENLIS 275

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
            + +I         +K  +         +          EY   K   L + +       
Sbjct: 276 RVFDILPVGLWFTDKKGQLLRGNPMGQKIWGGEPTVGQEEYGVFKARKLPSGEEVAPDDW 335

Query: 266 ESS---------LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
             +         L E  +    +  +     Y   + ++  E    +      +     +
Sbjct: 336 ALAKTVNQGVTILDEMLEIEAFDGEKRVILNYTAPVLDHKGEVEAAVVVNLDITQRQKAE 395

Query: 317 EGENLTPETVDKCP--IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
           E +      + +          + G     N    ++  +  +  ++     S + +   
Sbjct: 396 EEKQRLQRQLLQAQKMESVGRLAGGVAHDFNNMLGVIVGHAEM-ALDATAMDSEIREDLT 454

Query: 375 LSDNNAIKPVMLYRS 389
              + A +   L R 
Sbjct: 455 EILDAAKRSANLTRQ 469


>gi|116255237|ref|YP_771070.1| putative two component fused sensor/regulator transcriptional
           regulator [Rhizobium leguminosarum bv. viciae 3841]
 gi|115259885|emb|CAK02979.1| putative two component fused sensor/regulator transcriptional
           regulator [Rhizobium leguminosarum bv. viciae 3841]
          Length = 642

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 91/522 (17%), Positives = 179/522 (34%), Gaps = 38/522 (7%)

Query: 317 EGENLTPETVDKCPI--PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
           + E      VD       + +   G +   N        YK  + +      S       
Sbjct: 12  DEEGRFRLLVDAITDYAIYMLSPEGIVTSWNSGAQRFKGYKPPEILGE--HFSRFYLEED 69

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
            +     + +                   + +     A   I         E +    I 
Sbjct: 70  RAAGLPARALATAAEHGR---FEGEGWRQRKDGSRFWA-HVIIDPIRRPSGELIGYAKIT 125

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDIL 493
            +  + R  ++ +     Q   +++  SD  I +++  G + S N    ++ GY  ++I+
Sbjct: 126 RDLTERRAAEQAIRQSEEQFRRLVQGVSDYAIYMLDPTGNVSSWNFGAERIKGYRPQEII 185

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553
              F+ F             T +         E+      K+       I+I  +     
Sbjct: 186 GTHFSTFYTAEDREAGLPE-TALGIARAEGRFEREGWRVRKDGTRFWASIVIDAIRDEEG 244

Query: 554 ----YSLTMHDISEWKQEKNKLSHAKKIAEKES--SHKSDFLARVSHEIRTPLTAIIGFS 607
               ++    DI+E  + +  L  A++   +             ++H+    L A++G  
Sbjct: 245 NVLGFAKITRDITEKMETQRALEQAREELFQSQKMEAIGQLTGGIAHDFNNLLMAVLGSL 304

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
           E++K +    L         +   +       +   +L  S+    +  LH EP+ +   
Sbjct: 305 EILKKRMPQDLS---LTSLVDNAMQGAQRGAALTQRMLAFSR----RQELHVEPIDVSGL 357

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727
           V   + ++   +      I TSF   +P IL D   ++   LN++ NA    PSGG+I++
Sbjct: 358 VRGMMDMLS-RSLGPLTAIETSFPVRLPTILTDPNQLEMAILNLVVNARDAMPSGGRIVL 416

Query: 728 STTHT----------SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
             +                V + V D G GM    LE+A+ PF          G+GTGLG
Sbjct: 417 RASEESLPSGKIPLPPGRYVRIAVIDEGEGMDAKTLEQAITPFFTTKG----VGKGTGLG 472

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819
           L + + +   + G+  + S+  +GT +E+ FP+       + 
Sbjct: 473 LSMVQGLASQSGGRLMMKSSLGEGTTVELWFPVASVEQTTEA 514



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/342 (9%), Positives = 86/342 (25%), Gaps = 22/342 (6%)

Query: 67  YLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH 126
            LD E  F       T    + +   G +   +    +  G    +++G           
Sbjct: 10  SLDEEGRFRLLVDAITDYAIYMLSPEGIVTSWNSGAQRFKGYKPPEILGEHFSRFYLEED 69

Query: 127 IDPNNHIGDLLKR---QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI 183
                     L        + G+      +G+       +   PI   + E  G+    I
Sbjct: 70  -RAAGLPARALATAAEHGRFEGEGWRQRKDGS--RFWAHVIIDPIRRPSGELIGYAK--I 124

Query: 184 VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHS-----SVEKEKYDIFSQQSPPPHLRMKN 238
                         ++ +++F  L +    ++              F  +    +   + 
Sbjct: 125 TRDLTERRAAEQAIRQSEEQFRRLVQGVSDYAIYMLDPTGNVSSWNFGAERIKGYRPQEI 184

Query: 239 KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFH-TINLNQYTKKQYFGTLQNNSK 297
             +  + +Y  +D      +  L  +      E+E +    +  ++        +++   
Sbjct: 185 IGTHFSTFYTAEDREAGLPETALGIARAEGRFEREGWRVRKDGTRFWASIVIDAIRDEEG 244

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP--------IPFFVYSHGNLFYANPSFL 349
               +       +             E + +               +   NL  A    L
Sbjct: 245 NVLGFAKITRDITEKMETQRALEQAREELFQSQKMEAIGQLTGGIAHDFNNLLMAVLGSL 304

Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR 391
            + K +   D+ +   +   +   +       + +   R   
Sbjct: 305 EILKKRMPQDLSLTSLVDNAMQGAQRGAALTQRMLAFSRRQE 346



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 36/426 (8%), Positives = 94/426 (22%), Gaps = 35/426 (8%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + +D  G +   +    +  G    ++IG            +       L   +     
Sbjct: 157 IYMLDPTGNVSSWNFGAERIKGYRPQEIIGTHFSTFYTAEDREAGLPETALGIARAEGRF 216

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +   W +          +    I        GF    I        + +   ++  ++  
Sbjct: 217 EREGWRVRKDGTRFWASIVIDAIRDEEGNVLGFAK--ITRDITEKMETQRALEQAREELF 274

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHL------RMKN--KVSSLTEYYAHKDDVLKTE 257
              +++          +D  +              RM     ++SL +            
Sbjct: 275 QSQKMEAIGQLTGGIAHDFNNLLMAVLGSLEILKKRMPQDLSLTSLVDNAMQGAQRGAAL 334

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
              +L          E    ++                          R    L+     
Sbjct: 335 TQRMLAFSRRQELHVEPI-DVSGLVRGMMDMLSRSLGPLTAIETSFPVRLPTILTDPNQL 393

Query: 318 GENLTPETV---DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
              +    V   D  P        G +     +         +           ++D  +
Sbjct: 394 EMAILNLVVNARDAMPSG------GRIVL--RASEESLPSGKIPLPPGRYVRIAVIDEGE 445

Query: 375 LSDNNAIKPV---MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
             D   ++                            ++   +            E     
Sbjct: 446 GMDAKTLEQAITPFFTTKGVGKGTGLGLSMVQGLASQSGGRLMMKSSLGEGTTVELWFPV 505

Query: 432 GIEPEDVDTRINK-RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490
               +  +   ++ R+ E    +L          I  ++ +G++L     + +  G+ V 
Sbjct: 506 ASVEQTTEAAADRPRQEENATPRLR---------IVAVDDDGLVLMNTTLMLEDLGHTVF 556

Query: 491 DILRKP 496
           + +  P
Sbjct: 557 EAMAGP 562


>gi|319778176|ref|YP_004134606.1| pas sensor protein [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317171895|gb|ADV15432.1| PAS sensor protein [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 518

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 82/510 (16%), Positives = 180/510 (35%), Gaps = 45/510 (8%)

Query: 321 LTPETVDKCP--IPFFVYSHGNLFYANPSFLLLTKYK---------SVDDIEIAGGLSTL 369
           L  +  D+ P  I             N ++  LT ++         +  ++E  G    L
Sbjct: 19  LLSQMFDQAPGFIALLREPGHIFELTNAAYQRLTGHRQVIGKSVRDAFPELEGNGFFEHL 78

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
                  +      V +   +        R+            + F+             
Sbjct: 79  DHVYMTGEPYIGHGVKVGLRNIADGPVEERI------------LDFVYQPVKADDGRITA 126

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
                 +  +       + +    L SIL    D + +I+ +G I S + A   LFGY  
Sbjct: 127 IFIEGTDVSELSFANAALRLREDHLRSILATVPDAMVVIDEQGGIQSFSTAAETLFGYQS 186

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT--LEKITLGSTKEEKLLSLRIIIKK 547
            +++ +   + +        + YL   L+   R+   L +   G+ K+     + + + +
Sbjct: 187 GEVIGQNVKMLMPSPYRDEHDAYLLRYLTTGERRIIGLGRTVTGARKDGTTFPMELSVGE 246

Query: 548 LPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEKESS--HKSDFLARVSHEIRTPLTAI 603
           +   +   ++    D++E  + + ++   ++     +      +  + ++HEI  PLTAI
Sbjct: 247 MHPGTGRFFTGFCRDLTERHRAEARIQEQQQELLHMARFTALGEMASTLAHEINQPLTAI 306

Query: 604 IGFSEVIKN--QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI-SKIESGKMNLHFE 660
             + +  +   ++      P   +             D++  L D  ++ ES       +
Sbjct: 307 TNYLKGSRRLLEKSRDENAPMLRDAVEKAAEQALRAGDVIRHLRDFVARGES-----ERQ 361

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720
              L   + EA SL  + A E  +L+          +L D   ++Q+ LN++ NA+    
Sbjct: 362 VERLPMLIEEAASLALVGAREINLLVSYKLDPVAELVLTDRIQIQQVLLNLMRNAVEAMQ 421

Query: 721 --SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
                ++ ++T    +    + V DTG G+      +  +PF           +G G+GL
Sbjct: 422 DSPRRELKVTTIARDDGMAEVSVIDTGPGLAPEVSAQLFQPFVTTKK------QGMGVGL 475

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            + + +V+++ G  +  + P  GT      
Sbjct: 476 SICRTIVESHGGHIWAEAMPTGGTAFRFTL 505



 Score = 48.5 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 70/243 (28%), Gaps = 14/243 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNTWYGK 146
           ID  G ++  S       G  + ++IG  +  +    + D ++   +  L   +    G 
Sbjct: 165 IDEQGGIQSFSTAAETLFGYQSGEVIGQNVKMLMPSPYRDEHDAYLLRYLTTGERRIIGL 224

Query: 147 TTLW---PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                    +GT    P++L+   ++     F  F GF         +   A   R+ ++
Sbjct: 225 GRTVTGARKDGTTF--PMELSVGEMHPGTGRF--FTGF--CRDLTERHRAEA---RIQEQ 275

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
              L  + +  +  E           P   +    K S      +  ++           
Sbjct: 276 QQELLHMARFTALGEMASTLAHEINQPLTAITNYLKGSRRLLEKSRDENAPMLRDAVEKA 335

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
           +E++        H  +     + +          E    L+      ++       +   
Sbjct: 336 AEQALRAGDVIRHLRDFVARGESERQVERLPMLIEEAASLALVGAREINLLVSYKLDPVA 395

Query: 324 ETV 326
           E V
Sbjct: 396 ELV 398


>gi|254285404|ref|ZP_04960369.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae AM-19226]
 gi|150424676|gb|EDN16612.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           cholerae AM-19226]
          Length = 1146

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 89/382 (23%), Positives = 159/382 (41%), Gaps = 24/382 (6%)

Query: 441 RINKRKMEIEVMQLC---SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP- 496
           R +++  ++   QL     +L+A    I I + +  ++ TN A  K++    E    +P 
Sbjct: 481 RSSEQVAKLSTEQLRWLTELLDAIPSMIFISDEKDEVVLTNAAYRKIYHTCCEKGCVQPQ 540

Query: 497 --FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554
              +     +        + +    +         +             I   +     Y
Sbjct: 541 PECSFLALPDQHEAEFSIIIQAPKSNCSIGEHYFHVTRRA---------ISHPINQRKYY 591

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
               +DI+E K+ +  L  + + A +    ++ FLA VSHE+RTP+ A++G  E++ ++ 
Sbjct: 592 LTLFNDITELKETEQALRQSNEQALQAVEARNHFLAVVSHELRTPIAAMLGLMEILASR- 650

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
              L +            S   +   VND+LD SKIE+ ++ L     +L + +   +  
Sbjct: 651 ---LKSSESQLLLTNAISSAERLKLHVNDILDFSKIEAQQLQLDIGLYNLADELGPLLRG 707

Query: 675 VQLYANEKRILIRTSFANN-IPRILADLRSVKQIALNILSNAIHFTPSGGQI-IISTTHT 732
            +  A  K I     ++ N +     D     QI  N+LSNAI FT  G  +  I     
Sbjct: 708 FEASAQLKEIEFDVIWSPNSLLLANFDALRFNQIVTNLLSNAIKFTDQGRVVFKIDVAPE 767

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
               + + V DTG GMT  ++E    PF Q  ++   R  GTGLG+ +   +++   GK 
Sbjct: 768 ---MLTIVVEDTGCGMTQTQIESLFVPFAQADSTITRRFGGTGLGMSIVANLIELMNGKI 824

Query: 793 YIFSTPAKGTLIEIIFPLYDTS 814
            + S   +GT I++  PL   +
Sbjct: 825 EVKSKFEQGTQIQVNLPLVTQT 846


>gi|222056644|ref|YP_002539006.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           FRC-32]
 gi|221565933|gb|ACM21905.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           FRC-32]
          Length = 737

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 69/374 (18%), Positives = 147/374 (39%), Gaps = 20/374 (5%)

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
                +     +    LE+  D IAI +++  I   N A     G P   ++ +     +
Sbjct: 366 EMADNLRAGEKRFRLALESIPDMIAICDQQLRIQYVNPATISATGLPSSKLVGR-LDSEI 424

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS----LT 557
                 +    L + L     Q LE                +    L     +       
Sbjct: 425 WPELYKLWRPVLEKALETAKVQNLELELPSPKGSRHF---HVTYVPLMEEDGHVKELMGI 481

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
            HD +  KQ +++L    +   + +     F    SH+++ PL  +  + + + ++R+  
Sbjct: 482 THDYTVRKQAEDELKRTLEELIRSNRDLEQFAYVASHDLQEPLRMVASYVQ-LLDKRYRG 540

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
             + +   Y NY  +    +  ++ DLL   +I      + F+ V L+   +EA+  ++ 
Sbjct: 541 QLDQKADRYINYAIQGAKRMQTLIEDLLAYGRI---NRVVEFQQVDLNLVCAEAVKAMET 597

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ--IIISTTHTSNE 735
             +E    ++   A ++P +  D   +  +  N++ NAI +     Q  ++IS   T + 
Sbjct: 598 AISESGGAVQ---AADLPVVWGDKIQLFILFQNLIGNAIKYRRQDVQPLVLISARQTEDA 654

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            V + V+D G+G+     ++  + F ++    +    GTG+GL   + +V+ + G+ ++ 
Sbjct: 655 WV-ISVQDNGIGIEKQYFDRIFQIFQRLHA--REEYPGTGIGLASCRKIVERHGGRIWVE 711

Query: 796 STPAKGTLIEIIFP 809
           S P  G+      P
Sbjct: 712 SMPGNGSTFFFTIP 725



 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/132 (11%), Positives = 38/132 (28%), Gaps = 5/132 (3%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D    ++ ++       G  + K++G    ++   L+      +   L+           
Sbjct: 393 DQQLRIQYVNPATISATGLPSSKLVGRLDSEIWPELYKLWRPVLEKALET-AKVQNLELE 451

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
            P    + +  +    +P+   +       G  I H   V        KR  ++    + 
Sbjct: 452 LPSPKGSRHFHVT--YVPLMEEDGHVKELMG--ITHDYTVRKQAEDELKRTLEELIRSNR 507

Query: 210 IKKGHSSVEKEK 221
             +  + V    
Sbjct: 508 DLEQFAYVASHD 519


>gi|91201003|emb|CAJ74060.1| similar to sensor histidine kinase [Candidatus Kuenenia
           stuttgartiensis]
          Length = 792

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 82/481 (17%), Positives = 185/481 (38%), Gaps = 24/481 (4%)

Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
             +  +G +   N     +  Y+ ++++        L    K++  + +   +  ++  T
Sbjct: 322 MMLDLNGKILTVNRREEEIIGYQ-MEELVNKYVFDFLTIPSKITVISLLSMAVNKKAPTT 380

Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
            I   ++   I         +  +      +  + +       +  + +  + +++ E  
Sbjct: 381 EIEVISKNKQI--------LVMELDIIAVRERNDIIYMLAHFRDITERKNLELELKREKE 432

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
           +L  I+      + +I ++  I   N+ +        + I+               ++  
Sbjct: 433 KLDDIVSQIGADLLVIGKDKKIRWANKRLINNHPL-GKSIINHTCFDTFCNFQEDPVDCP 491

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT--MHDISEWKQEKNK 570
             ++         E++     K+ K  ++          +   +   + DI+E K+E+ +
Sbjct: 492 SFKVFKTAKINQTERMVYNHNKK-KFCNVISSPIFDKEGNVVQVLELIQDITEKKREEER 550

Query: 571 LSHAKKIAEKESSHKS--DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
               ++         S     A V+HEI TPL  I G ++    ++ G   N    E+  
Sbjct: 551 QKKLQQQLIHSDRLISIGRLAAGVAHEINTPLAIISGMTQGFLERKKG-FSNETIKEF-K 608

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            + +    +  IVN LL++S  E  +      P ++++ + + ++L+     +K   I  
Sbjct: 609 TMQKVAKRIEKIVNSLLELSHFEGNE---QPRPANINKIIKDTVALIIEPFTKKNKKIVL 665

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748
             ++ +P+I      ++Q+ +N+L NA   T SG  I I+T   +   + +   DTG G+
Sbjct: 666 KLSSRLPKIKGFAEQLQQVIMNLLINADDATDSGDTISITTGIKNKNTITITFEDTGKGI 725

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
              +L +   PF       +  G GTGLGL +   ++  + G  ++ S   KG   EI  
Sbjct: 726 PENQLSRVFDPFFT----DKEVGRGTGLGLSITYGIIKRHNGAIHVKSDVGKGAKFEINL 781

Query: 809 P 809
           P
Sbjct: 782 P 782



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 58/136 (42%), Gaps = 2/136 (1%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            +++    +   +    +D + +++  G IL+ NR   ++ GY +E+++ K    FL   
Sbjct: 301 SRIKTSEERYKMLFNYAADSMMMLDLNGKILTVNRREEEIIGYQMEELVNKYVFDFLTIP 360

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY-SLTMHDISE 563
           +   +   L+  ++     T E   +   K+  ++ L II  +      Y      DI+E
Sbjct: 361 SKITVISLLSMAVNKKAPTT-EIEVISKNKQILVMELDIIAVRERNDIIYMLAHFRDITE 419

Query: 564 WKQEKNKLSHAKKIAE 579
            K  + +L   K+  +
Sbjct: 420 RKNLELELKREKEKLD 435


>gi|300866718|ref|ZP_07111402.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300335318|emb|CBN56562.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 1199

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 84/283 (29%), Positives = 143/283 (50%), Gaps = 31/283 (10%)

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           +ISE KQ +  L  AK+ AE  +  KS+FLA +SHE+RTPL  I+G+++++   +     
Sbjct: 675 EISERKQAELALQQAKEAAEAANRAKSEFLANMSHELRTPLNGILGYTQIL---KMHDNL 731

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
             +  +    I   G  +L +++D+LD+SKIE+ KM L+   +     +     L Q+ A
Sbjct: 732 TSQQQDNLQTIQDCGGHLLTLIDDILDLSKIEAEKMELYPTELDFRNFIKSISDLFQMRA 791

Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-- 736
           ++K I       + +PR I AD + ++Q+ +N+L NA+ FT SGG +          E  
Sbjct: 792 SQKNIAFTCEELSQLPRSIYADEKRLRQVLINLLGNAVKFTNSGG-VTFKVGCLEGGEWG 850

Query: 737 ---------------------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
                                +  +V DTG+G+   +LE+   PF Q+ + +    EGTG
Sbjct: 851 LGTIGNNEQRTTNNYQLPIIKLRFQVEDTGIGIEASKLEEIFLPFHQV-SDRAYSTEGTG 909

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEI--IFPLYDTSHP 816
           LGL +++ +V    G+  + S   KG++  +    PL + S+P
Sbjct: 910 LGLSISQKLVKMMGGEIGVKSALNKGSIFWVDLELPLVENSYP 952



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 28/180 (15%), Positives = 59/180 (32%), Gaps = 18/180 (10%)

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDIL- 493
           E  D +  +  +         I EA+ + + I +  E   +  N  + ++ GY  ++I  
Sbjct: 168 EISDRKQAEAALRESERFTQQIAEASPNILYIHDLIEQRNIYINGQIRQVLGYTPQEIQN 227

Query: 494 --RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL---RIIIKKL 548
              K  +  +       +  Y  +I +       E       ++     L     I  + 
Sbjct: 228 MGCKLLSNLIHPEDIVKLQEYYQKIKNCSNGNIFEFDYRMKHQDGSWRWLKSRDAIFVRT 287

Query: 549 PFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
           P         T  DI+E KQ ++++       +  +            + +  LT I+G 
Sbjct: 288 PEGQVKQLLGTASDITEQKQTEDEIRLLLATTQAINRSL---------DFQDALTVILGL 338



 Score = 48.1 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/157 (9%), Positives = 40/157 (25%), Gaps = 5/157 (3%)

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVD-DI 360
              +     A   E E  T +  +  P   +++        Y N     +  Y   +   
Sbjct: 168 EISDRKQAEAALRESERFTQQIAEASPNILYIHDLIEQRNIYINGQIRQVLGYTPQEIQN 227

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
                LS L+    +         +   S+        R+     +       +      
Sbjct: 228 MGCKLLSNLIHPEDIVKLQEYYQKIKNCSNGNIFEFDYRM--KHQDGSWRWLKSRDAIFV 285

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
                +     G   +  + +  + ++ + +    +I
Sbjct: 286 RTPEGQVKQLLGTASDITEQKQTEDEIRLLLATTQAI 322


>gi|189424899|ref|YP_001952076.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi
           SZ]
 gi|189421158|gb|ACD95556.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi
           SZ]
          Length = 641

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 76/245 (31%), Positives = 127/245 (51%), Gaps = 8/245 (3%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
            L  AK+ AE  SS K  FLA++SHEIRTP+ AI G +E+  +Q      + +  E    
Sbjct: 261 ALKAAKEQAEAASSAKGAFLAQMSHEIRTPMNAISGLTELALDQA----PSAQQRELLEG 316

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I  + N +L ++N +LD SK+E+G + L   P +L + ++  +    +    K +   T 
Sbjct: 317 ISHAANHLLSLINQVLDFSKLEAGIVELEQIPFNLRQTLTATLLPFSVRVRSKGVRFETV 376

Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILR--VRDTG 745
            A+N+P R++ D   ++Q+ +N++ NA+ FT  G  +I +     +     LR  VRDTG
Sbjct: 377 LADNLPTRVIGDPTRLRQVLVNLVGNAVKFTRQGCIEIDVEKGEQTGNHCELRIMVRDTG 436

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+   ++ +   P+ Q   S      GTGLGL + K +++   G   + S P  GT   
Sbjct: 437 IGIPQEKIAQIFAPYSQAAASTTREFGGTGLGLSIVKQLLEVMQGTITVESQPGAGTCFS 496

Query: 806 IIFPL 810
           +  P+
Sbjct: 497 VSVPV 501


>gi|325274858|ref|ZP_08140873.1| multi-sensor hybrid histidine kinase [Pseudomonas sp. TJI-51]
 gi|324100006|gb|EGB97837.1| multi-sensor hybrid histidine kinase [Pseudomonas sp. TJI-51]
          Length = 917

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 93/390 (23%), Positives = 177/390 (45%), Gaps = 34/390 (8%)

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
              +    +  E  +L   +E        ++ +G +L   R    LF   +  +     +
Sbjct: 134 HRDLATEAVPAEAERLLGWVE------IELSHDGTLL---RGYRNLFTSLLLILACLVLS 184

Query: 499 VFLEQNTPSVMNHYLTEI-----------LSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
             L       +N  +  I           L   L            +    ++  +    
Sbjct: 185 GLLALRMSRSINDPIERIKHAVNQLKDGHLEERLPTMGSHELDELARGINRMAETLHNAH 244

Query: 548 LPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
                       D+ +  +       +L  A+K A + S  KS+FLA +SHEIRTPL  I
Sbjct: 245 EELQHSIDQATEDVRQNLETIEIQNIELDMARKEALEASRIKSEFLANMSHEIRTPLNGI 304

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +GF+ +++     P    R ++Y + I++S + +L I+N++LD SKIE+GK+ L   P +
Sbjct: 305 LGFTHLLQKSEMTP----RQLDYLSTIEKSADNLLGIINEILDFSKIEAGKLVLDSIPFN 360

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSG 722
           L + + + ++++   A+ K++ + +    + P  ++ D   +KQI  N++SNAI FT  G
Sbjct: 361 LRDLIQDTLTILAPAAHAKQLELLSLVYRDTPTSLVGDPLRLKQILTNLVSNAIKFTREG 420

Query: 723 GQIIIST----THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
             I++       H  + ++ + V+DTG+G++  ++    + F Q  NS   +  GTGLGL
Sbjct: 421 -TIVVRAMLDDEHEDHAQLRISVQDTGIGLSPQDVRTLFQAFSQADNSLARQPGGTGLGL 479

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            ++K +++   G+  + STP +G+   I  
Sbjct: 480 VISKRLIEQMGGEIGVDSTPGEGSQFWISL 509


>gi|168703357|ref|ZP_02735634.1| GAF sensor hybrid histidine kinase [Gemmata obscuriglobus UQM 2246]
          Length = 1156

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 118/647 (18%), Positives = 234/647 (36%), Gaps = 35/647 (5%)

Query: 176 SGFRGFGIVHVNRVDNDPRAL-------GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228
           +G RGF +    R      A         + L++  +   E      ++++       + 
Sbjct: 73  TGQRGFVLTGDERYLAPHTAAVGNIYTRLQDLERLTADNPEQAARVPAIKEHARTKIREL 132

Query: 229 SPPPHLRMKNKVSSLTEYYAHKDD--VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKK 286
                +R      +             + + +  +   E++    +++      + YT  
Sbjct: 133 EETIVVRRTKGFEAARAAVETDRGKNAMDSVRAQVEAMEQTEREVRKERLAAAGSAYTVT 192

Query: 287 QYFGTLQNNSKES-FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLF--Y 343
              G L      +    + +    S+ A   +   L  +T              ++    
Sbjct: 193 VVSGVLSGVLGVALSGVVGYLVRRSVRAGRRQEWLLAGQT--GLSQALVGDRALDVLGER 250

Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403
           A           +       GG    +    +    A  P  +   D     A     + 
Sbjct: 251 ALAFLAEYLGAHAGAFFAKDGGTFRRVATYGVPAGGA--PDRIGPDDGLAGQAIKAGRSF 308

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
                 +  +T                   E   V+  I    +         +L+  ++
Sbjct: 309 LLRDLPAGYLTVGSALGRGTPEHLAVVPLTEDGAVNAVIELGFVRAPRGDAAELLDRVAE 368

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
                +    + S N          +E+  R+       +   +           LD + 
Sbjct: 369 -----DVGLAVRSAN--YRAHLKDLLEETQRQS------EELQAQTEELRVSNEELDEQG 415

Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
              + T    ++++   L     +L   +       D  E  + K++L    +  E+ S 
Sbjct: 416 RALRETQTRLEQQQT-ELEQTNVQLEEQTQLMEAQRD--EATRAKSELQVQARELERASR 472

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
           +KSDFLA +SHE+RTPL + +  ++++ + R G L   +   YA  I  +GN +L ++ND
Sbjct: 473 YKSDFLANMSHELRTPLNSSLILAKLLADNRDGNLTAEQVR-YAETIRAAGNDLLALIND 531

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLR 702
           +LD+SKIE+G M +   PV L     +   + Q  A+EK++      A   P  I  D +
Sbjct: 532 ILDLSKIEAGHMEVRPGPVPLASLAEDLTRVFQPIADEKKLGFAVRLAPGCPEGIETDRQ 591

Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
            ++Q+  N+LSNA+ FT SG ++ +  +    + +   VRDTG+G+  ++ +   + F Q
Sbjct: 592 RLEQVLKNLLSNALKFTESG-EVALEASAAPGDRIAFAVRDTGIGIAEHQQQMVFEAFRQ 650

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
              +   +  GTGLGL +A+ +     G  ++ S P +G+   +  P
Sbjct: 651 ADGTTNRKHGGTGLGLSIARELARLLGGDIHLASEPGRGSTFTVTIP 697


>gi|298492280|ref|YP_003722457.1| PAS/PAC sensor signal transduction histidine kinase ['Nostoc
           azollae' 0708]
 gi|298234198|gb|ADI65334.1| PAS/PAC sensor signal transduction histidine kinase ['Nostoc
           azollae' 0708]
          Length = 533

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 96/510 (18%), Positives = 183/510 (35%), Gaps = 53/510 (10%)

Query: 331 IPFFVYSHGNLFYANPSFLLLTKYKSVDDI---------EIAGGLSTLLDAPKLSDNNAI 381
             F +  +  L Y N +   LT+Y   + +         +++      L        +  
Sbjct: 36  AAFCLGENAQLLYVNKATCCLTEYSREELLSMKVHELDVDLSLHNWLQLWQNLKHLEHDS 95

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
                         A   L  I++                              E     
Sbjct: 96  FKSRYRTKGGRVFLAEVNLRYIKYQDIEFGCAFIQDKGDGLIDLSIQEWTDDGREIKKNL 155

Query: 442 INKRK----------MEIEVMQLCSILEATSDGIAIINREGI-ILSTNRAVSKLFGYPVE 490
             +            + +   +   +LE+ +  I +I  +G  I   N A   L GY   
Sbjct: 156 QQELTVIQPQHIDTLLHLRESRFRFLLESINASIFLI--QGTQISYVNPAAELLTGYTKT 213

Query: 491 DIL-----RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
           ++L      +        N+P+  + Y              +     TK+ K   L  ++
Sbjct: 214 ELLTGFDLNQVIKSKKSHNSPANNSEY--------------QEIKILTKDGKERWLVGVM 259

Query: 546 KKL------PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
            +L             LT  DI+ +K  +++L    +  +  S  ++  +A V H+ RTP
Sbjct: 260 ARLNGVIDFHGQEVEILTAIDITNYKYVESELCQTLEKTKLLSELRAHLVAIVCHQFRTP 319

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  I  FS  +  +        + + +  +I      +  I++D+L ++K ES + +   
Sbjct: 320 LNVI-SFSNSLLKRHIDKWDEEKILPFIKHIQIGVEQINQILDDILFLAKAESVQFSFQP 378

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719
           E + L E   + IS + +  +E  I   +    N  ++  D R V+ I  N+L NAI ++
Sbjct: 379 EVIDLVEFCQDLISKMLIINSEYHINFDSR--GNCEKVWIDKRLVEPIVNNLLENAIKYS 436

Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
           P G  + +        EVI  V+D G+ +   +  +  +PF +   S   +  G GLGL 
Sbjct: 437 PIGSVVELRVDCHE-GEVIFHVKDQGIAIPEEDQNRLFEPFYR--GSNIDKVPGHGLGLS 493

Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           + K +V+ + G+  + S    GT   ++ P
Sbjct: 494 IVKTLVNLHGGQMRVVSKVGVGTTFTVVLP 523


>gi|300721895|ref|YP_003711173.1| Sensor protein BarA [Xenorhabdus nematophila ATCC 19061]
 gi|297628390|emb|CBJ88955.1| Sensor protein BarA [Xenorhabdus nematophila ATCC 19061]
          Length = 773

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 79/249 (31%), Positives = 127/249 (51%), Gaps = 10/249 (4%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           + + +  +L+ AKK A++    K++FLA +SHE+RTPL  +IGF+  +           +
Sbjct: 260 QLEIQNVELTIAKKRAQEAVRIKTEFLANMSHELRTPLNGVIGFTRQMLKTPITS----Q 315

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
            +EY   IDRS N +L I+ND+LD S++ES K+ L   P  L + V+E I L+   AN K
Sbjct: 316 QMEYLYVIDRSANNLLKIINDILDFSRLESNKLLLEQVPFLLRDTVNEVIELLTPAANVK 375

Query: 683 RILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----V 737
            + +     + +P ++  D   ++QI  N++ NAI FT  GG + +       +     +
Sbjct: 376 NLPLHHHIDDKLPNLMIGDPIRLQQILTNLIGNAIKFTDKGG-VTLDIKLRQQQHHLIQI 434

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
              V DTG+G+         + F Q   S      GTGLGL + K +V+   G+    S 
Sbjct: 435 DFTVTDTGIGIKPEHRPILFQAFNQADASITRHYGGTGLGLSITKRLVNEMKGEIDFISE 494

Query: 798 PAKGTLIEI 806
            +KGT+   
Sbjct: 495 VSKGTVFYF 503


>gi|225870884|ref|YP_002746831.1| sensor histidine kinase [Streptococcus equi subsp. equi 4047]
 gi|225700288|emb|CAW94548.1| sensor histidine kinase [Streptococcus equi subsp. equi 4047]
          Length = 450

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 90/406 (22%), Positives = 168/406 (41%), Gaps = 36/406 (8%)

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDT-RINKRKMEIEVMQLCSILEATSDGIAIINREG 472
            +          E M  +    +  D  R+    +  E  +L SIL   +DG+   NR G
Sbjct: 55  RYTDTINEKADIELMELSEQLNDLSDVFRLTHENLAQEKNRLASILAYMTDGVLATNRSG 114

Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
            I+  N    K      E  L K  T  L+ ++P      +++        TL +     
Sbjct: 115 KIIMINETAQKQLNLNREQALEKNITDLLDSDSPYTYRELVSKT----PIVTLNR----R 166

Query: 533 TKEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
               + +SLR+        S +     + +HD +E ++E+ +                 F
Sbjct: 167 NDTGEFVSLRLRFALNRRESGFISGLVVVLHDTTEQEKEERERRL--------------F 212

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
           ++ VSHE+RTPLT++  + E +     G L       +        N ++ +++DLL++S
Sbjct: 213 VSNVSHELRTPLTSVKSYLEAL---DEGALKEDIAPSFIKVSLDETNRMMRMISDLLNLS 269

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLV-----QLYANEKRILIRTSFANNIPRILADLRS 703
           +I++    L  E  +    ++  ++       Q  +  K   I   +      +  D   
Sbjct: 270 RIDNHVTQLSVEMTNFTAFMTSILNRFDLVKNQHTSTGKSYEIVRDYPITSIWLEIDNDK 329

Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
           + Q+  NIL+NAI ++P GG+II++   T   ++I+ + D G+G+   +L      F ++
Sbjct: 330 MTQVIENILNNAIKYSPDGGKIIVNMKTTDT-QLIISISDEGLGIPKKDLPLIFDRFYRV 388

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             ++     G GLGL +AK ++    G  +  S   KG+   I+ P
Sbjct: 389 DKARSRAQGGAGLGLAIAKEIIKQRRGFIWAKSDYGKGSTFTIVLP 434


>gi|225028824|ref|ZP_03718016.1| hypothetical protein EUBHAL_03110 [Eubacterium hallii DSM 3353]
 gi|224953845|gb|EEG35054.1| hypothetical protein EUBHAL_03110 [Eubacterium hallii DSM 3353]
          Length = 639

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 72/250 (28%), Positives = 133/250 (53%), Gaps = 7/250 (2%)

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           K+++  L  A++ A + +  KS FLA +SHEIRTP+  ++G +E+I  +          +
Sbjct: 187 KKQQVFLMQAREEAMEANRAKSTFLANMSHEIRTPINVMLGMNEMILRESESR----EVV 242

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           +YA  ++++GN +L ++N++LDI++IES K+++  E  SL + V E   +    A  K +
Sbjct: 243 QYAKSVEKAGNYLLSLINNILDITRIESKKLDIIEEKFSLRQLVQEVCLIGAKQAEAKNL 302

Query: 685 LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
                    +P+ +  D   +KQ+ LN+++NA+ +T  G ++ +        ++   V+D
Sbjct: 303 EFVVDVEETLPKYLEGDALHIKQVILNLINNAVKYTKKG-KVFLKVCQEEK-QISFSVKD 360

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TG+G+   ++E     F +    +    EG+GLGL +AK + +   G     S   KG+ 
Sbjct: 361 TGIGIKKEDMEALFDMFMRADIKRHRNIEGSGLGLTIAKELCEQMGGHIQAESIYGKGSN 420

Query: 804 IEIIFPLYDT 813
             + FPL D 
Sbjct: 421 FTVYFPLKDA 430


>gi|163848304|ref|YP_001636348.1| ATPase domain-containing protein [Chloroflexus aurantiacus J-10-fl]
 gi|222526218|ref|YP_002570689.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
 gi|163669593|gb|ABY35959.1| ATP-binding region ATPase domain protein [Chloroflexus aurantiacus
           J-10-fl]
 gi|222450097|gb|ACM54363.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
          Length = 920

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 98/610 (16%), Positives = 211/610 (34%), Gaps = 66/610 (10%)

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
                  G ++       I          R  +++ ++ +  +  D   ++         
Sbjct: 358 SSRNAVIGVTAGLALAAVIVGYWVARQITRPLDELVAVADAVSAGDLDRRSTVQAENELG 417

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY-----LSHRNHPSLSAYFDEGEN 320
             +    +    +     T +Q    LQ ++           L  +          +G  
Sbjct: 418 RLAFAFNQMTAHLLHLYQTSRQLNRELQIDAILQIATNSATDLQPQTEAIAIVPDTDGWR 477

Query: 321 LTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
               T                   N     L  Y     +  AGG+ + L  P L +   
Sbjct: 478 FRVRTNAPLNYATLTEHALTTLPVNGE-TQLVPYTDP--LLAAGGVQSALVVPLLREQQT 534

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
           I  ++    +R   +                         +   P       +    +  
Sbjct: 535 IGALIFAHPERNAFS-------------------------SAVLPHLQAIANMTVVALVN 569

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
            +     + +  Q  +IL + SDG+ + +  G I+  N A  +L                
Sbjct: 570 ALLYEAAQRDAEQRRAILASISDGVIVSDARGRIVLLNPAARQLL-------------QP 616

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTM 558
           +      +  H L         +   +     T   + L++      +   +     + +
Sbjct: 617 VLPAHADLSIHDLPLTGKEARSELFGRPEEVVTIGHRFLTVGRAPVCMTDGTRLGEVIVL 676

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
           HD++               A +    K+DF+A +SHE+RTPLT + G+ E+I  Q    L
Sbjct: 677 HDVT--------------SAIQIDRAKTDFIATISHELRTPLTIVRGYLELILRQSASAL 722

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
            +    +    + +S   +  +VN+ + ++ +++G++ +  +PV+L   + EA+   +  
Sbjct: 723 -DAEQRDMLEEVRQSAIQMTHLVNNAIMVANLDAGQIEVQIQPVALAPVIEEALRPYRAV 781

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738
            +E+ I +     +++P +LAD   +KQ    +  NA  +   G QI++S     ++ + 
Sbjct: 782 LSERDIQVLLVLPDDLPPVLADRELLKQALSQLFDNARRYVHQG-QILVSAGV-DSDTLW 839

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           L + DTG G+    + +    F ++  +   +  G GLGL + + +++   G   + STP
Sbjct: 840 LAISDTGPGIPTEIMGRLFTRFQRVDGNNSAQRGG-GLGLAITRQLLELQGGSITVTSTP 898

Query: 799 AKGTLIEIIF 808
            +G+   I  
Sbjct: 899 GQGSTFTIRL 908


>gi|312880454|ref|ZP_07740254.1| multi-sensor hybrid histidine kinase [Aminomonas paucivorans DSM
           12260]
 gi|310783745|gb|EFQ24143.1| multi-sensor hybrid histidine kinase [Aminomonas paucivorans DSM
           12260]
          Length = 817

 Score =  284 bits (726), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 104/654 (15%), Positives = 203/654 (31%), Gaps = 49/654 (7%)

Query: 184 VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL 243
               R+    R + + L  +   L   +K     +                 +  K S  
Sbjct: 39  FQEQRLLLASRQVLEVLAAQRMALLGFRKDQLLADGRVMARSPVVEMAVLPLLGGKPSPD 98

Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303
           + ++  +   L+   +    +             +    +   +    L      +   L
Sbjct: 99  SLHFLTRWLELRRRVFHHRGAVLLDAAGHPRLE-VGGGVFPADRVAQVLARLRGGAEPRL 157

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIA 363
                    +    G  L  E ++  P  F +Y      +       L        +  A
Sbjct: 158 VDLGGTPEESTVVLGIPLMREGMEAAPGGFVLYLLDPRQF-------LRGVLDPLPLPYA 210

Query: 364 GGLSTLLDAPKLSDNNAIKPVML-YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
           GG   L       +    +   L  R+D    A    +   +      L         A 
Sbjct: 211 GGRVRLRFPLSPEERGTREEDRLVARADLPGFAWLVEVSVPRDEVLRPLREKVRLLLGAA 270

Query: 423 QFPENMPQNGIEPEDVDTRIN--------KRKMEIEVMQLCSILEATSDGIAIINREGII 474
            F       G                   +R +     +   I+E + +GI  ++    +
Sbjct: 271 GFLVLALALGGLAMWNRRETQFYRHRYELERDLRASEERYRRIVETSLEGICALDEGFRV 330

Query: 475 LSTNRAVSKLFGYP-VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
           +  N  + ++ GY   E++L +P   FL             E+      +  E+      
Sbjct: 331 ILANPRLCEMLGYEKEEELLGRPVEEFLFPEDREDQR-LRHEVRRSGRGERYERRFRRRD 389

Query: 534 KEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS--DFL 589
            E     +     +            + D +   +     +  +    +    +S     
Sbjct: 390 GENLWAHVSASPVQDEEGRFCGSFAMLTDQTARVEADRLRARLEDQLLQAQKMESVGRLA 449

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
             V+H+    LT I+G++E +   +    G    +     ++R G    D+   LL  S+
Sbjct: 450 GGVAHDFNNLLTGILGYTE-LARGKL--EGQEGAVRDLEEVERLGRRATDLTRQLLAFSR 506

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709
               +  L  + V L+E + E++ L+      + + IR     ++  +  D    +Q+ +
Sbjct: 507 ----RQTLDPKVVDLNERIEESLRLL-DRLLGEDVQIRFRPGEDLGLVRVDPAQFEQVLV 561

Query: 710 NILSNAIHFTPSGGQIIISTTHTS--------------NEEVILRVRDTGVGMTNYELEK 755
           N+  NA    P GG + + T+H                   V+L V DTG GM       
Sbjct: 562 NLAVNARDAMPEGGILSLRTSHVELRAEAAVWYLEAAPGSYVLLEVSDTGTGMDEETRAH 621

Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             +PF          G+GTGLGL +   +V  + G  +++S P KG+  +I  P
Sbjct: 622 LFEPFFTTKP----VGKGTGLGLSMVYGIVKQHGGHLWVYSEPGKGSTFKIYLP 671



 Score = 67.4 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 31/286 (10%), Positives = 80/286 (27%), Gaps = 8/286 (2%)

Query: 89  IDAHGYLKEISEELPKTIGN-YAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
           +D    +   +  L + +G     +++G  + +       +      ++ +       + 
Sbjct: 324 LDEGFRVILANPRLCEMLGYEKEEELLGRPVEEFLFPEDREDQRLRHEVRRSGRGERYER 383

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                +G NL+  +  +A P+      F G   F ++       +   L  RL+ +    
Sbjct: 384 RFRRRDGENLWAHV--SASPVQDEEGRFCG--SFAMLTDQTARVEADRLRARLEDQLLQA 439

Query: 208 HEIKKGHSSVEKEKYDIFSQQSP-PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
            +++          +D  +  +    +  +        E      + ++           
Sbjct: 440 QKMESVGRLAGGVAHDFNNLLTGILGYTELARGKLEGQEGAVRDLEEVERLGRRATDLTR 499

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA-YFDEGENLTPET 325
             L                ++   +L+   +   E +  R  P               + 
Sbjct: 500 QLLAFSRRQTLDPKVVDLNERIEESLRLLDRLLGEDVQIRFRPGEDLGLVRVDPAQFEQV 559

Query: 326 VDKCPI-PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
           +    +        G +     S + L    +V  +E A G   LL
Sbjct: 560 LVNLAVNARDAMPEGGILSLRTSHVELRAEAAVWYLEAAPGSYVLL 605



 Score = 42.3 bits (98), Expect = 0.34,   Method: Composition-based stats.
 Identities = 21/281 (7%), Positives = 64/281 (22%), Gaps = 29/281 (10%)

Query: 138 KRQNTWYGKTTLWPIEGTNLYVPIDLA------ALPIYSRNREFSGFRGFGI-------- 183
           + + T      +   +       ++++        P+  + R   G  GF +        
Sbjct: 223 EERGTREEDRLVARADLPGFAWLVEVSVPRDEVLRPLREKVRLLLGAAGFLVLALALGGL 282

Query: 184 -------VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ----SPPP 232
                      R   +     +  ++++  + E          E + +            
Sbjct: 283 AMWNRRETQFYRHRYELERDLRASEERYRRIVETSLEGICALDEGFRVILANPRLCEMLG 342

Query: 233 HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL 292
           + + +  +    E +   +D         +         +  F   +            +
Sbjct: 343 YEKEEELLGRPVEEFLFPEDREDQRLRHEVRRSGRGERYERRFRRRDGENLWAHVSASPV 402

Query: 293 QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP--IPFFVYSHGNLFYANPSFLL 350
           Q+         +     +     D       + + +          + G     N     
Sbjct: 403 QDEEGRFCGSFAMLTDQTARVEADRLRARLEDQLLQAQKMESVGRLAGGVAHDFNNLLTG 462

Query: 351 LTKYKSVDD--IEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389
           +  Y  +    +E   G    L+  +     A        +
Sbjct: 463 ILGYTELARGKLEGQEGAVRDLEEVERLGRRATDLTRQLLA 503


>gi|170692837|ref|ZP_02883999.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia graminis
           C4D1M]
 gi|170142493|gb|EDT10659.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia graminis
           C4D1M]
          Length = 807

 Score =  284 bits (726), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 76/493 (15%), Positives = 169/493 (34%), Gaps = 39/493 (7%)

Query: 337 SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA 396
             G +   NP    +  Y   + +     L     A + +       +   R +      
Sbjct: 32  EDGRIRSWNPGGEAIHGYSEEEVLGQP--LDIFYSAEQRAKGLPQTALATARREGR---F 86

Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
                 ++ + + +   + +     +     +    I  +  D +     +     +   
Sbjct: 87  EGESWRLRKDGK-AFWASVVLTALRSSDGALLGFGEIVRDMTDKKAVHDAVLESERRFRL 145

Query: 457 ILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           +++  +D  I +++ EG + + N    ++ GY   +I+   F+ F      +        
Sbjct: 146 LVDGVTDYAIFMLSPEGRVTNWNSGAHRIKGYAANEIIGSHFSRFYTPEDAARGLPQ-RG 204

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLS 572
           + +       E       K        ++I  +  +     ++    DI+E  +    L 
Sbjct: 205 LEAAARDGRFESEGWRVRKNGSRFWAHVVIDAIRHNGTLVGFAKITRDITERMEATRLLE 264

Query: 573 HAKKIAEKES--SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
             +    +             V+H+    +  + G  E+++++      +    E  +  
Sbjct: 265 ETRVALVQSQKMEAIGKLTGGVAHDFNNVMQILRGNLELLESRH---KRDGWTRERLDKA 321

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
             +      + + LL   +    +  L    ++L  A+     L++  A  + + I T  
Sbjct: 322 IDAVERGAKLASQLLAFGR----QQPLRPIVINLASAIRGMDDLLR-RALGETVEIETVV 376

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT--------------HTSNEE 736
           A  +   L D+  ++ + LN+  NA      GG++ +  +                + + 
Sbjct: 377 AGGLWNTLVDVHQMENVILNLAINARDAMKEGGKLTMEVSNAMLDDHYVAGFPDVPAGQY 436

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           V+L V D+G GM    +++A  PF          GEGTGLGL +A   V  + G   I+S
Sbjct: 437 VMLAVTDSGTGMPPEVVQRAFDPFFTTKP----EGEGTGLGLSMAYGFVKQSGGHIRIYS 492

Query: 797 TPAKGTLIEIIFP 809
               GT ++I  P
Sbjct: 493 EVGHGTTVKIYLP 505



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 49/125 (39%), Gaps = 6/125 (4%)

Query: 458 LEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           L++  D  +  ++ +G I S N     + GY  E++L +P  +F      +      T +
Sbjct: 19  LQSLRDYAVIGLSEDGRIRSWNPGGEAIHGYSEEEVLGQPLDIFYSAEQRAKGLPQ-TAL 77

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLS 572
            +       E  +    K+ K     +++  L  S    L     + D+++ K   + + 
Sbjct: 78  ATARREGRFEGESWRLRKDGKAFWASVVLTALRSSDGALLGFGEIVRDMTDKKAVHDAVL 137

Query: 573 HAKKI 577
            +++ 
Sbjct: 138 ESERR 142



 Score = 67.4 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 36/318 (11%), Positives = 83/318 (26%), Gaps = 17/318 (5%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL---KRQNTWYGKTT 148
            G ++  +       G    +++G  L D+               L   +R+  + G++ 
Sbjct: 33  DGRIRSWNPGGEAIHGYSEEEVLGQPL-DIFYSAEQRAKGLPQTALATARREGRFEGESW 91

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +G   +  + L AL   S +    GF    IV                +++F  L 
Sbjct: 92  RLRKDGKAFWASVVLTAL--RSSDGALLGFGE--IVRDMTDKKAVHDAVLESERRFRLLV 147

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHL---RMKNKVSSLTEYYAHKDDVLKTE--KYPLLT 263
           +    ++          +  +   H       N++        +  +       +  L  
Sbjct: 148 DGVTDYAIFMLSPEGRVTNWNSGAHRIKGYAANEIIGSHFSRFYTPEDAARGLPQRGLEA 207

Query: 264 SEESSLPEQEDFH-TINLNQYTKKQYFGTLQ-NNSKESFEYLSHRNHPSLSAYFDEGENL 321
           +      E E +    N +++        ++ N +   F  ++      + A     E  
Sbjct: 208 AARDGRFESEGWRVRKNGSRFWAHVVIDAIRHNGTLVGFAKITRDITERMEATRLLEETR 267

Query: 322 TPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIA--GGLSTLLDAPKLSDNN 379
                 +        + G     N    +L     + +      G     LD    +   
Sbjct: 268 VALVQSQKMEAIGKLTGGVAHDFNNVMQILRGNLELLESRHKRDGWTRERLDKAIDAVER 327

Query: 380 AIKPVMLYRSDRTCIAAS 397
             K      +        
Sbjct: 328 GAKLASQLLAFGRQQPLR 345



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/255 (9%), Positives = 58/255 (22%), Gaps = 11/255 (4%)

Query: 57  QNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGM 116
            ++++V +   L+SE  F       T    + +   G +   +    +  G  A ++IG 
Sbjct: 127 TDKKAVHDA-VLESERRFRLLVDGVTDYAIFMLSPEGRVTNWNSGAHRIKGYAANEIIGS 185

Query: 117 RLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFS 176
                              L         ++  W +          +    I   N    
Sbjct: 186 HFSRFYTPEDAARGLPQRGLEAAARDGRFESEGWRVRKNGSRFWAHVVIDAIR-HNGTLV 244

Query: 177 GFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYD-------IFSQQS 229
           GF    I        +   L +          +++          +D       +     
Sbjct: 245 GFAK--ITRDITERMEATRLLEETRVALVQSQKMEAIGKLTGGVAHDFNNVMQILRGNLE 302

Query: 230 PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYF 289
                  ++  +      A        +    L +     P +     +           
Sbjct: 303 LLESRHKRDGWTRERLDKAIDAVERGAKLASQLLAFGRQQPLRPIVINLASAIRGMDDLL 362

Query: 290 GTLQNNSKESFEYLS 304
                 + E    ++
Sbjct: 363 RRALGETVEIETVVA 377


>gi|91223871|ref|ZP_01259135.1| putative histidine kinase [Vibrio alginolyticus 12G01]
 gi|91191363|gb|EAS77628.1| putative histidine kinase [Vibrio alginolyticus 12G01]
          Length = 1058

 Score =  284 bits (726), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 84/264 (31%), Positives = 135/264 (51%), Gaps = 12/264 (4%)

Query: 559 HDISEWK--QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
             +S  K  Q K     AK  A K S  KS FLA +SHEIRTPL  +IG SEV+ +    
Sbjct: 373 RMLSRLKLTQAKEDAEQAKDDAIKASKAKSSFLANMSHEIRTPLNGVIGISEVLSDTSLT 432

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
                   +Y + I+ S  L+L ++ND+LD SKIESG + +      + E++ +  S++ 
Sbjct: 433 AT----QRDYVDTIETSSQLLLSLINDVLDFSKIESGMLLISPHSTCVRESIYDIASIIS 488

Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSN 734
             A EK I ++ + + N P  ++ D   ++Q+ +N +SNA+ FT  G  ++ + T    N
Sbjct: 489 PKAKEKGIDVQVNISRNTPYHVMLDDHRIRQVVMNFMSNAVKFTEQGSVELSVITREIKN 548

Query: 735 EE--VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
            E  +   V+D+G+G+   + +K   PF Q  NS   +  GTGLGL ++  +V+   G+ 
Sbjct: 549 GEAVIEFSVKDSGIGIDAQQQKKIFAPFAQEDNSTTRQFGGTGLGLAISTQLVELMGGEI 608

Query: 793 YIFSTPAKGTLIEIIF--PLYDTS 814
            + S   KG+        P+    
Sbjct: 609 QLESEKGKGSRFFFELTAPVVTQE 632


>gi|309779243|ref|ZP_07674006.1| sensory box histidine kinase/response regulator [Ralstonia sp.
           5_7_47FAA]
 gi|308922047|gb|EFP67681.1| sensory box histidine kinase/response regulator [Ralstonia sp.
           5_7_47FAA]
          Length = 805

 Score =  284 bits (726), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 112/651 (17%), Positives = 211/651 (32%), Gaps = 42/651 (6%)

Query: 184 VHVNRVDNDPRALGKRLD-KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS 242
           V   R      A  K++D           + H S   + + +          R    V  
Sbjct: 12  VRAARETCAAPAARKQVDVFWVDDPLTGTRLHVSAGAQTWGVQPDSLCGIRDRWLVHVHP 71

Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302
                                       +        + +            ++      
Sbjct: 72  DDHVALRAAWEGLARGREFALEYRWLGTDDGQTREYRVRERG-YLLPRLDGASAHAVGVV 130

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIE 361
                     A   E E       +  P P   +     + +AN ++     ++  D + 
Sbjct: 131 EDVTQGQQTLAALTESEFQLQWLTESVPFPLVQIDPEHRVRFANRAYAQRLGFRHEDVLG 190

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                  L D    +    +   +        +     L          +   + P    
Sbjct: 191 R-----HLRDLMGEAAYARVLSHLNDAFAGQRVEFEMELQYRADVGRRFVHAAYSPQHGP 245

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
           +   + +    +  +  + +  + +      +  +++E   D IA ++RE   +  NRAV
Sbjct: 246 DGKVQAL--VCVVEDITERKEAEHERFRHQREFVTLVENAPDVIARLDRELRCMYVNRAV 303

Query: 482 SKLFGYPVEDILRKPFT-VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
           ++ FG     ++ K      L       +        ++   QTL           ++  
Sbjct: 304 TEAFGVTPAVMIGKTLAASPLATEVTRPLEDAARHAFAVGAEQTLALHLDVLDGRPRIAH 363

Query: 541 LRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLS-------HAKKIAEKESSHKSDFL 589
               +      +       L ++D++E  + + +          A+  AE  +  +  FL
Sbjct: 364 YNARVIPEADRNGAMESALLIIYDVTERTEAERERDALLLREQAARAQAEAAARARDQFL 423

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
           A VSHE+R+PL  I  ++ V+++Q  G  G P        I       + ++ DLLD ++
Sbjct: 424 AVVSHELRSPLNGIQNWAYVLESQIAG--GAPLMQRALAGIKTGVEQQVRLIEDLLDATR 481

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709
           + SGK+ L  EP  L  A+  A++ V   A E+ I + T+   +   I  D   V+QI  
Sbjct: 482 VMSGKLRLTREPFVLRTALERALNSVHALAAERHIALHTTIDLDDHEIDGDADRVEQIVW 541

Query: 710 NILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
           N+L+NAI FT  GG + +S      E   + VRD G G+    L     PF Q   +   
Sbjct: 542 NLLTNAIKFTQEGGDVWLSADLL-GEVARIVVRDNGRGIAPAFLPYLFDPFRQADGAHTR 600

Query: 770 RG--------EGTGLGLPLAKAMVDANMGKFYIFSTPAK-GTLIEIIFPLY 811
           R                   K + + + G+ Y  S   + G    +  PL+
Sbjct: 601 RTGGLGLGLAL--------VKRLTELHGGRVYARSEGDQHGAAFTVYLPLH 643



 Score = 67.4 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 21/253 (8%), Positives = 60/253 (23%), Gaps = 13/253 (5%)

Query: 78  PIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDL 136
                      ID    ++  +    + +G     ++G  L D+  +  +    +H+ D 
Sbjct: 154 TESVPFPLV-QIDPEHRVRFANRAYAQRLGFRHEDVLGRHLRDLMGEAAYARVLSHLNDA 212

Query: 137 LKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRAL 196
              Q   +     +  +       +  A  P +  + +        +V       +    
Sbjct: 213 FAGQRVEFEMELQYRAD--VGRRFVHAAYSPQHGPDGKVQAL--VCVVEDITERKEAEHE 268

Query: 197 GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP-------PPHLRMKNKVSSLTEYYAH 249
             R  ++F  L E      +    +                 P + +   +++       
Sbjct: 269 RFRHQREFVTLVENAPDVIARLDRELRCMYVNRAVTEAFGVTPAVMIGKTLAASPLATEV 328

Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
              +    ++      E +L    D                   + +      L      
Sbjct: 329 TRPLEDAARHAFAVGAEQTLALHLDVLDGRPRIAHYNARVIPEADRNGAMESALLIIYDV 388

Query: 310 SLSAYFDEGENLT 322
           +     +   +  
Sbjct: 389 TERTEAERERDAL 401


>gi|304392409|ref|ZP_07374350.1| histidine kinase [Ahrensia sp. R2A130]
 gi|303295513|gb|EFL89872.1| histidine kinase [Ahrensia sp. R2A130]
          Length = 866

 Score =  284 bits (726), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 117/705 (16%), Positives = 246/705 (34%), Gaps = 52/705 (7%)

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL-------D 201
                     +PI+     I        G   F        D    AL +          
Sbjct: 171 RLRSSAEAFEMPIETRNGNILEAQGRAFGSHAFVRFLSLTGDRAALALLESQYTSLMATT 230

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT----- 256
                L E       +   +  +               ++       H  D         
Sbjct: 231 DTMRTLLEAVPMPVWLRDREEGLTWANPAYVKSIDTADLAQAVASNQHLLDAGDRNRVSE 290

Query: 257 --EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
                       ++    +      +    +      ++++  ++   +       + + 
Sbjct: 291 QLHGAHDADGNAAARTTFQKRLHATMAGDRRTVDVTVIEHDGGQAGLAVDMSEVEQVQSD 350

Query: 315 FDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
                    +T+D+      ++  G  L + N +   L        ++ A   +   +  
Sbjct: 351 LRRTLQGHAQTLDQLATAVAIFDAGQKLAFHNQALADLWALAP-GFLDSAPSNAAFFNEL 409

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
           + SD  A +P                L  +    E +     +P  ++ +   N  + G 
Sbjct: 410 RDSDRIANQPDWAKW--------RGELLAVHHATEPAEHFWHLPDGRSLRVIANPHRQGG 461

Query: 434 EPEDVDTRINKRKMEIEVMQLCSI----LEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
                +    + +ME   + +  +    L+   + IA+   +G +  +N A+ +L+    
Sbjct: 462 VTWVFENITEQLEMESRYIAMTQVQGETLDHLGEAIAVFASDGRLKLSNPALQELWHLED 521

Query: 490 EDIL-RKPFTVFLEQNTPSVMNH-YLTEILSLDLRQTLEKITLGSTK--------EEKLL 539
           E +    P           +     + E    +     +++  G T         + +L 
Sbjct: 522 EQVAADTPIAEVARYCGEKLAEDGTVDEPGQAESAMVWDELVTGVTGVTDSRDTIDGRLH 581

Query: 540 SLRIII-----KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
            +   +       LP      L+  D+S+    +  L    +  E     K++FL  VS+
Sbjct: 582 LMEDRVLDYALVPLPNGQ-TLLSFADVSDSVSLEQTLLERNEALEAAQRLKNEFLEHVSY 640

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           E R PLT I GF+E+++   FGPL N +  EY ++I  S  ++  +V++LLD++ +++G 
Sbjct: 641 EFRAPLTNIKGFAEILQGGAFGPL-NEKQAEYIDHIASSSGVLHTLVDNLLDLATMDAGA 699

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714
           + L  E + L + +  A S V     ++ + +  +  ++   +  D   +++I  N+L N
Sbjct: 700 LELDLEQLDLADTLEAARSAVMPALKDRGLALEINVEDDTRFV-GDSDQIQKILGNLLQN 758

Query: 715 AIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           A  F+P GG I +    TS ++V++R+ D G G+     +   + F    ++ +    G 
Sbjct: 759 ASRFSPKGGTIRLD-GVTSGDDVVIRIADEGPGIPAEIRDTIFERFS--SSAVRSHKRGA 815

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL---YDTSHP 816
           GLGL +AKA+   + G   + S   +G       P+    + S P
Sbjct: 816 GLGLAVAKALCGLHGGALELDSAVEEGATFICRLPIRHDAEASQP 860


>gi|219854352|ref|YP_002471474.1| hypothetical protein CKR_1009 [Clostridium kluyveri NBRC 12016]
 gi|219568076|dbj|BAH06060.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 657

 Score =  284 bits (726), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 106/402 (26%), Positives = 167/402 (41%), Gaps = 46/402 (11%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
           + + E E+  L SI+E + D I   +   II S N+   KL+GY  ++I+    +  +  
Sbjct: 118 ELQREEEIETLASIVEYSEDAILSKDLNDIITSWNKGAEKLYGYKKDEIIGTHISKLIPD 177

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMH 559
            T   +   L +       +     T   TK  K + + I I  +          S    
Sbjct: 178 ETIGDVEIILDKTKKG--IEIYHHETTRLTKSGKKILVSICISPIYNREKKIIGASAIAR 235

Query: 560 DISEWKQEKN----------------------------KLSHAKKIAEKESSHKSDFLAR 591
           DIS+ K ++                             +L  AK  AE  +  K++FLA 
Sbjct: 236 DISDKKSKEKQLKEKYEELSAIYEELASTEEELRSNYIELEKAKIEAENANIAKANFLAN 295

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           +SHEIRTPL  IIG  ++I               Y   +  S   +LDI N++LDISKIE
Sbjct: 296 MSHEIRTPLNGIIGTIDLISLMEI----RECTRPYLEILRNSSTHLLDITNNILDISKIE 351

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALN 710
           SGK+ LH +   L   +   I  +    + K I         IP  ++ D   +KQI +N
Sbjct: 352 SGKIELHMKVFDLKNMLDTFIREISYACSNKNIKFTYFIDPLIPSELIGDELKLKQILIN 411

Query: 711 ILSNAIHFTPSGGQI-IISTTHTSNEEVI--LRVRDTGVGMTNYELEKAMKPF--GQIPN 765
           + +N++ FT  G  +  +      NE+VI    + DTG G+     ++  K F   Q+P 
Sbjct: 412 LFNNSLKFTKKGHILFKVKKISQVNEKVILEFSIEDTGTGIKEKFKKQIFKRFVYQQVPQ 471

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           ++      TGLGL ++K +V    G  +  S    G+     
Sbjct: 472 NEYYST--TGLGLLISKELVKIMNGDIWFESAENIGSTFSFT 511



 Score = 45.4 bits (106), Expect = 0.038,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 48/140 (34%), Gaps = 5/140 (3%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ-NTWYGKTT 148
           D +  +   ++   K  G    ++IG  +  +     I     I D  K+    ++ +TT
Sbjct: 143 DLNDIITSWNKGAEKLYGYKKDEIIGTHISKLIPDETIGDVEIILDKTKKGIEIYHHETT 202

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                G  + V I ++  PIY+R ++  G     I              K   ++ S ++
Sbjct: 203 RLTKSGKKILVSICIS--PIYNREKKIIGAS--AIARDISDKKSKEKQLKEKYEELSAIY 258

Query: 209 EIKKGHSSVEKEKYDIFSQQ 228
           E         +  Y    + 
Sbjct: 259 EELASTEEELRSNYIELEKA 278



 Score = 44.2 bits (103), Expect = 0.092,   Method: Composition-based stats.
 Identities = 14/107 (13%), Positives = 36/107 (33%), Gaps = 6/107 (5%)

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
            I++ +  I+  N+    +  Y  E++L       +  +    + + L    S +     
Sbjct: 22  LILDMQWKIICGNKKALSVLKYTKEELLSMTVFNLISSDEKRAVINQLKNFNSEE----F 77

Query: 526 EKITLGSTKEEKLLSLRIIIKKLP--FSSCYSLTMHDISEWKQEKNK 570
              T   TK+     + +    +    +      + DI+   Q + +
Sbjct: 78  HFNTFYCTKDSLKFPVEVSFIPMELNSNKIILNLIRDITLELQREEE 124


>gi|153953733|ref|YP_001394498.1| sensor protein [Clostridium kluyveri DSM 555]
 gi|146346614|gb|EDK33150.1| Predicted sensor protein [Clostridium kluyveri DSM 555]
          Length = 652

 Score =  284 bits (726), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 106/402 (26%), Positives = 167/402 (41%), Gaps = 46/402 (11%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
           + + E E+  L SI+E + D I   +   II S N+   KL+GY  ++I+    +  +  
Sbjct: 113 ELQREEEIETLASIVEYSEDAILSKDLNDIITSWNKGAEKLYGYKKDEIIGTHISKLIPD 172

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMH 559
            T   +   L +       +     T   TK  K + + I I  +          S    
Sbjct: 173 ETIGDVEIILDKTKKG--IEIYHHETTRLTKSGKKILVSICISPIYNREKKIIGASAIAR 230

Query: 560 DISEWKQEKN----------------------------KLSHAKKIAEKESSHKSDFLAR 591
           DIS+ K ++                             +L  AK  AE  +  K++FLA 
Sbjct: 231 DISDKKSKEKQLKEKYEELSAIYEELASTEEELRSNYIELEKAKIEAENANIAKANFLAN 290

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           +SHEIRTPL  IIG  ++I               Y   +  S   +LDI N++LDISKIE
Sbjct: 291 MSHEIRTPLNGIIGTIDLISLMEI----RECTRPYLEILRNSSTHLLDITNNILDISKIE 346

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALN 710
           SGK+ LH +   L   +   I  +    + K I         IP  ++ D   +KQI +N
Sbjct: 347 SGKIELHMKVFDLKNMLDTFIREISYACSNKNIKFTYFIDPLIPSELIGDELKLKQILIN 406

Query: 711 ILSNAIHFTPSGGQI-IISTTHTSNEEVI--LRVRDTGVGMTNYELEKAMKPF--GQIPN 765
           + +N++ FT  G  +  +      NE+VI    + DTG G+     ++  K F   Q+P 
Sbjct: 407 LFNNSLKFTKKGHILFKVKKISQVNEKVILEFSIEDTGTGIKEKFKKQIFKRFVYQQVPQ 466

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           ++      TGLGL ++K +V    G  +  S    G+     
Sbjct: 467 NEYYST--TGLGLLISKELVKIMNGDIWFESAENIGSTFSFT 506



 Score = 45.4 bits (106), Expect = 0.038,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 48/140 (34%), Gaps = 5/140 (3%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ-NTWYGKTT 148
           D +  +   ++   K  G    ++IG  +  +     I     I D  K+    ++ +TT
Sbjct: 138 DLNDIITSWNKGAEKLYGYKKDEIIGTHISKLIPDETIGDVEIILDKTKKGIEIYHHETT 197

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                G  + V I ++  PIY+R ++  G     I              K   ++ S ++
Sbjct: 198 RLTKSGKKILVSICIS--PIYNREKKIIGAS--AIARDISDKKSKEKQLKEKYEELSAIY 253

Query: 209 EIKKGHSSVEKEKYDIFSQQ 228
           E         +  Y    + 
Sbjct: 254 EELASTEEELRSNYIELEKA 273



 Score = 44.2 bits (103), Expect = 0.092,   Method: Composition-based stats.
 Identities = 14/107 (13%), Positives = 36/107 (33%), Gaps = 6/107 (5%)

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
            I++ +  I+  N+    +  Y  E++L       +  +    + + L    S +     
Sbjct: 17  LILDMQWKIICGNKKALSVLKYTKEELLSMTVFNLISSDEKRAVINQLKNFNSEE----F 72

Query: 526 EKITLGSTKEEKLLSLRIIIKKLP--FSSCYSLTMHDISEWKQEKNK 570
              T   TK+     + +    +    +      + DI+   Q + +
Sbjct: 73  HFNTFYCTKDSLKFPVEVSFIPMELNSNKIILNLIRDITLELQREEE 119


>gi|120555156|ref|YP_959507.1| multi-sensor hybrid histidine kinase [Marinobacter aquaeolei VT8]
 gi|120325005|gb|ABM19320.1| multi-sensor hybrid histidine kinase [Marinobacter aquaeolei VT8]
          Length = 956

 Score =  284 bits (726), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 84/263 (31%), Positives = 140/263 (53%), Gaps = 17/263 (6%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  A+K A + S  KS+FLA +SHEIRTPL  IIGF+E++           +  ++ N 
Sbjct: 277 ELDFARKEALEASRIKSEFLANMSHEIRTPLNGIIGFTELLLKSPLPR----QQRDHLNT 332

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I +S  ++L I+ND+LD SKIE+GK+ L   P  L + V E + ++   A+ K + +   
Sbjct: 333 IRKSSEILLTIINDILDFSKIEAGKLILDRVPFQLRDIVEEVMVMLAPAAHAKNLDLVPL 392

Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE------VILRVR 742
             N++P  I+ D   VKQ+  N+++NAI FT +G ++++  +    +       + L + 
Sbjct: 393 VYNDVPDNIMGDPLRVKQVITNLVNNAIKFTQTG-EVVLRASLEDEDTEHNRVTLRLSIT 451

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D+GVG++  + +     F Q   S   +  GTGLGL ++K +V+   GK  + S   KG+
Sbjct: 452 DSGVGLSRAQQQSLFNAFSQADASTARQYGGTGLGLAISKRLVEEMGGKIGLESELGKGS 511

Query: 803 LIEIIF-P----LYDTSHPHDCI 820
                  P      D+S P + +
Sbjct: 512 TFWFTLTPELSSTGDSSSPKEAL 534


>gi|150018231|ref|YP_001310485.1| integral membrane sensor hybrid histidine kinase [Clostridium
           beijerinckii NCIMB 8052]
 gi|149904696|gb|ABR35529.1| integral membrane sensor hybrid histidine kinase [Clostridium
           beijerinckii NCIMB 8052]
          Length = 748

 Score =  284 bits (726), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 88/265 (33%), Positives = 141/265 (53%), Gaps = 15/265 (5%)

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            ++   +L +AK  AEK +  KS+FLA +SHEIRTPL A+IGFSE++KN     + + ++
Sbjct: 421 LEKTNTELKYAKIEAEKANEAKSEFLANMSHEIRTPLNAVIGFSELLKNT----IKDEKH 476

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
             Y   I+ +GN +L I+ND+LD+SKIE+G++ L ++P+ L     E   + +     K 
Sbjct: 477 KSYIETINVAGNSLLTIINDILDLSKIEAGRIELQYKPLKLSNIFREIKYIFKQKTKSKN 536

Query: 684 ILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-----EV 737
           I        +    IL D   ++QI LN++ NA+ FT  G  + +S   T+++     + 
Sbjct: 537 IEFLLDIQEDFDESILLDEVRIRQILLNLVGNAVKFTDKG-YVKLSLKGTTSQNKSSVDF 595

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
            + + DTG+G+   E EK    F Q       +  GTGLGL + K + +   GK ++ S 
Sbjct: 596 RISIEDTGIGIAEGEREKIFDAFKQASGQSIKKFGGTGLGLSITKKLTEIMQGKIFVESI 655

Query: 798 PAKGTLIEIIF---PLYDTSH-PHD 818
             KG+   + F   P+  T   P D
Sbjct: 656 EGKGSTFYVEFYNVPIAATEELPED 680


>gi|298528569|ref|ZP_07015973.1| multi-sensor signal transduction histidine kinase
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298512221|gb|EFI36123.1| multi-sensor signal transduction histidine kinase
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 577

 Score =  284 bits (726), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 88/507 (17%), Positives = 175/507 (34%), Gaps = 33/507 (6%)

Query: 317 EGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
           + E      VDK P+P F+ + G+  Y N   L L +  S + +     +      P   
Sbjct: 84  DREKQYHFLVDKSPLPIFIQTGGSFSYLNSQALNLFRASSQEQMLGKPVIDH--VHPDFR 141

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           +    +   L R  +   A      TI      ++ +         Q  +         +
Sbjct: 142 EKVKQRIQSLNRDKQEVPALEQVFTTI---DGKNVDVNVQAVPFNFQGQDGAGVF--VQD 196

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
               + N+ ++      +  I+      IA+ +R    +  ++     +    + I R  
Sbjct: 197 ITGHKKNQEQLRAWHDLMQYIIRHDPSAIAVHDRNMNYIYVSQRYLDDYQVTRDVIGRHH 256

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCY 554
           + VF     P          L  ++  + +   +           +              
Sbjct: 257 YEVF--PEIPDKWRQVHARALQGEVISSDDDHFIRPDGSIDYTRWQCRPWYKADGSIGGI 314

Query: 555 SLTMHDISEWKQEKNKLSHAKK-----------IAEKESSHKSDFLARVSHEIRTPLTAI 603
            L    I+  KQ + +L    +             E+ +     F   VSH++R PL +I
Sbjct: 315 VLYTEVITRLKQTEIQLRELNQSLEQKVRERTARLEELNRELEAFSYSVSHDLRAPLRSI 374

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
            GFS+ +       L +    +Y   +  +   +  +++++L +S+I   K  L   PV 
Sbjct: 375 DGFSQALLEDCHDQLDDE-GKDYLQRVRSATQRMGHLIDEMLKLSRI--SKAELKPLPVD 431

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG- 722
           L +   +  + +     +  + I+           AD   ++ +  N+LSNA  FT    
Sbjct: 432 LSQLARKVCTELSQENPDHHVDIQIQ---ETLTAQADPALMEILLENLLSNAWKFTKDNP 488

Query: 723 -GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
              I +      ++EV   + D G G      ++   PF ++ ++   +  GTG+GL   
Sbjct: 489 DAAIEVGQKVLDSQEVFF-IADNGAGFDMQYAQQLFAPFKRLHSAD--KYPGTGIGLATC 545

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIF 808
             +V  + G+ +  S P KGT      
Sbjct: 546 ARIVKKHQGRIWADSEPEKGTTFFFTL 572


>gi|153216132|ref|ZP_01950287.1| histidine protein kinase PhoR [Vibrio cholerae 1587]
 gi|124114447|gb|EAY33267.1| histidine protein kinase PhoR [Vibrio cholerae 1587]
          Length = 433

 Score =  284 bits (726), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 75/402 (18%), Positives = 153/402 (38%), Gaps = 30/402 (7%)

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDT-RINKRKMEIEVMQLCSILEATSDGIAI 467
           ++           +                   R  ++++   + +  +  E+  D + +
Sbjct: 54  SAWLWDEKRLTPPSGTGNWESLFNGIYRLQQRHRKKRKELTNLIRRFRNGAESLPDAVVV 113

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
              EG I+  NR    L G+   D   +P +  L          ++  +   D    LE 
Sbjct: 114 FRSEGNIVWCNRLAQHLLGFRWPDDAGQPISNLLRTP------DFIKYLKKDDFTDPLEM 167

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
                +       L + I        + + + D+++ KQ +                + +
Sbjct: 168 ----RSPLNSDRMLELRIVPYTEGE-HLMVVRDVTQLKQLEG--------------MRRN 208

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           F A VSHE+RTP+T + G+ E+   +    L  P + +    +    N +  +VN LL +
Sbjct: 209 FFANVSHELRTPMTVLQGYLEM--TEDPDVLAGPMWSKAHGVMTEQLNRMNGLVNQLLTL 266

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707
           SKIE+  M    + V +   +          + E +  +      ++ ++LAD   ++  
Sbjct: 267 SKIEASPMVELDQVVDVPAMLEVLEKEAVSLSGEAQHKLHFEVDKSL-KVLADEDQLRSA 325

Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
             N++ NA+ +TP G QI +   + + +   L V D G G+    L +  + F ++  ++
Sbjct: 326 ISNLVYNAVKYTPPGAQIDVRW-YRTGKGACLEVEDKGEGIEPQHLHRLTERFYRVDKAR 384

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
                G+GLGL + K  +  +     I+S    G+    + P
Sbjct: 385 SRDTGGSGLGLAIVKHALAHHDTHLDIYSKVGVGSKFSFVLP 426


>gi|170720398|ref|YP_001748086.1| multi-sensor hybrid histidine kinase [Pseudomonas putida W619]
 gi|169758401|gb|ACA71717.1| multi-sensor hybrid histidine kinase [Pseudomonas putida W619]
          Length = 919

 Score =  284 bits (726), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 95/401 (23%), Positives = 179/401 (44%), Gaps = 34/401 (8%)

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
              +    +  E  +L   +E        ++ +G++L   R    LF   +  +     +
Sbjct: 134 HRDLATEAVPAEAERLLGWVE------IELSHDGMLL---RGYRNLFTSMLLILACLVLS 184

Query: 499 VFLEQNTPSVMNHYLTEI-----------LSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
             L       +N  +  I           L   L            +    ++  +    
Sbjct: 185 GLLAMRMSRTINDPIARIKHAVNQLKDGHLEERLPAMGSHELDELARGINRMAETLHSAH 244

Query: 548 LPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
                       D+ +  +       +L  A+K A + S  KS+FLA +SHEIRTPL  I
Sbjct: 245 EELQHSIDQATEDVRQNLETIEIQNIELDMARKEALEASRIKSEFLANMSHEIRTPLNGI 304

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +GF+ +++     P    R ++Y + I++S + +L I+N++LD SKIE+GK+ L   P +
Sbjct: 305 LGFTHLLQKSELTP----RQLDYLSTIEKSADNLLGIINEILDFSKIEAGKLVLDSIPFN 360

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSG 722
           L + V + ++++   A+ K++ + +    + P  ++ D   +KQI  N++SNAI FT  G
Sbjct: 361 LRDLVQDTLTILAPAAHAKQLELLSLIYRDTPSSLVGDPLRLKQILTNLVSNAIKFTREG 420

Query: 723 GQIIIST----THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
             I++          N ++ + V+DTG+G++  ++    + F Q  NS   +  GTGLGL
Sbjct: 421 -TIVVRAMLEDEQQDNAQLRISVQDTGIGLSPQDVRTLFQAFSQADNSLARQPGGTGLGL 479

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819
            ++K +++   G+  + STP +G+   I   L       + 
Sbjct: 480 VISKRLIEQMGGEIGVDSTPGEGSQFWISLSLPKAHDDSEA 520


>gi|332186402|ref|ZP_08388147.1| sensory box protein [Sphingomonas sp. S17]
 gi|332013770|gb|EGI55830.1| sensory box protein [Sphingomonas sp. S17]
          Length = 506

 Score =  284 bits (726), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 89/509 (17%), Positives = 184/509 (36%), Gaps = 34/509 (6%)

Query: 315 FDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
            D+       T+D+      V   G +    P+  LL  +     I  +  +  L     
Sbjct: 7   ADQLVRFVEGTLDRA--VLLVNCDGVVTGCTPAVELLFGWARESLIGRSAAV--LYPGAD 62

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
            +     K ++  +               + +    LA         +            
Sbjct: 63  AAAGQLAKDLVQAKLQ---SPLRLEGWRTRRDGSEFLA-DTSIVALRDDDGTLTGFGLGL 118

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
            +    R  ++ +    + + SIL    D + +I+  G+ILS + A  +LFGY   +I+ 
Sbjct: 119 SDITPLRAREQALHQSELHVRSILATVPDAMIVIDDAGVILSFSAAAERLFGYGEAEIVG 178

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQT--LEKITLGSTKEEKLLSLRIIIKKLPFSS 552
           +  ++ +        + Y+    +   R+   + ++  G  ++     + + + +     
Sbjct: 179 RNVSLLMPSPYRDQHDGYIARYEATGERRIIGIGRVVTGLRRDGTEFPMELSVGEARDEG 238

Query: 553 --CYSLTMHDISEWKQEKNKLSHAKKIAEKESS--HKSDFLARVSHEIRTPLTAIIGFSE 608
              ++  + D++  +  + ++   +      S         + ++HE+  PLTAI  + E
Sbjct: 239 LRIFTGFIRDLTAQQLAELRMKELQAELIHVSRVSAMGTMASTLAHELNQPLTAIANYLE 298

Query: 609 VIKNQRFGPLGNPR--YIEYANYIDRSGNLVLDIVNDLLDI-SKIESGKMNLHFEPVSLD 665
             ++       + R    E  +   R       IV  L D  ++ E+           L 
Sbjct: 299 AGRDLIDNDASDARPFLREAMDEAAREALRAGQIVRRLRDFVARGET-----EKAVHDLP 353

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ- 724
             + EA  L  L A E+ I + T F     R+LAD   V+Q+ +N+L NA      G + 
Sbjct: 354 AMIDEAARLGLLGATERGIRLFTHFDPTASRVLADRVQVQQVLVNLLRNAAEAVADGVRR 413

Query: 725 -IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
            + ++T       + + V DTG G+      +    F         +  G GLGL +++ 
Sbjct: 414 DVTVTTLRREGGVIDIAVADTGPGIDPAIAPRLFDAF------ASGKEHGMGLGLSISRT 467

Query: 784 MVDANMGKFYIFSTPAK----GTLIEIIF 808
           +V+A+ G+ +  S   +    GT+     
Sbjct: 468 IVEAHGGRIWAESRADEDGQRGTIFHFTL 496



 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 42/415 (10%), Positives = 104/415 (25%), Gaps = 17/415 (4%)

Query: 63  SNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS 122
           S+    D    FV   + R V      +  G +   +  +    G     +IG     + 
Sbjct: 2   SDALIADQLVRFVEGTLDRAVLLV---NCDGVVTGCTPAVELLFGWARESLIGRSAAVLY 58

Query: 123 DILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFG 182
                       DL++ +     +   W           D + + +   +   +GF G G
Sbjct: 59  PGADAAAGQLAKDLVQAKLQSPLRLEGWRTRRDGSEFLADTSIVALRDDDGTLTGF-GLG 117

Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP------PHLRM 236
           +               + +     +         V  +   I S  +            +
Sbjct: 118 LS-DITPLRAREQALHQSELHVRSILATVPDAMIVIDDAGVILSFSAAAERLFGYGEAEI 176

Query: 237 KNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS 296
             +  SL     ++D           T E   +        +  +           +   
Sbjct: 177 VGRNVSLLMPSPYRDQHDGYIARYEATGERRIIGIGRVVTGLRRDGTEFPMELSVGEARD 236

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYA--NPSFLLLTKY 354
           +    +       +     +         +        + +  +      N     +  Y
Sbjct: 237 EGLRIFTGFIRDLTAQQLAELRMKELQAELIHVSRVSAMGTMASTLAHELNQPLTAIANY 296

Query: 355 -KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
            ++  D+             +  D  A + +   +  R      AR  T +   +    +
Sbjct: 297 LEAGRDLIDNDASDARPFLREAMDEAAREALRAGQIVRRLRDFVARGETEKAVHDLPAMI 356

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV---MQLCSILEATSDGI 465
                       E   +     +   +R+   +++++      L +  EA +DG+
Sbjct: 357 DEAARLGLLGATERGIRLFTHFDPTASRVLADRVQVQQVLVNLLRNAAEAVADGV 411


>gi|307132370|ref|YP_003884386.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Dickeya dadantii 3937]
 gi|306529899|gb|ADM99829.1| hybrid sensory histidine kinase, in two-component regulatory system
           with UvrY [Dickeya dadantii 3937]
          Length = 921

 Score =  284 bits (726), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 86/333 (25%), Positives = 148/333 (44%), Gaps = 19/333 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           L  Y +   +  P    +       ++      L   +   +             +++ +
Sbjct: 190 LLAYRLMRDVTIPIRNMV-----ETVDRIRRGQLDSRVEGHMLGELDMLKNGINSMAMSL 244

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                          +D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 245 TAYHEEMQQNIDQATYDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTP 304

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+      +          +Y   I+RS N +L+I+ND+LD SK+E+GK+ L  
Sbjct: 305 LNGVIGFTRQTLKTQLTST----QKDYLQTIERSANNLLNIINDVLDFSKLEAGKLVLEN 360

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P SL   + E I L+   A+EK + +  +  +++P   + D   ++QI  N+L NAI F
Sbjct: 361 IPFSLHNTLDEVIMLLAHTAHEKGLELTLNIQHDVPEQFVGDPLRLQQIITNLLGNAIKF 420

Query: 719 TPSGGQIIISTTHTSNEEV----ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           T  G  I I       E +     ++++DTG+G+   +  +  + F Q   S   +  GT
Sbjct: 421 TEQG-NIDIRIEKRRQESLQVLLEIQIKDTGIGIAEAQQTQLFQAFRQADTSISRQHGGT 479

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           GLGL + + +V    G     S P +GT     
Sbjct: 480 GLGLVITQRLVREMGGDISFHSKPNQGTTFWCT 512


>gi|326203106|ref|ZP_08192972.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium papyrosolvens DSM 2782]
 gi|325986752|gb|EGD47582.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium papyrosolvens DSM 2782]
          Length = 594

 Score =  284 bits (726), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 84/364 (23%), Positives = 161/364 (44%), Gaps = 27/364 (7%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           ++  E  ++  I+ + S+G+   + E   L+ N A+S +              + +    
Sbjct: 255 QLFQEKGKMSDIISSISEGLVAFDLELKPLNYNNALSDIMNRSQPYKS----ELLVRDFD 310

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
              +N  LT +++      + K  +    +    +L  II      +   + + DISE +
Sbjct: 311 ALEINSLLTTVINEKKSCQIIKTWVNKKLK---FTLSPIIDNNENVTGCVVLVQDISESE 367

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + +                + DF+A VSHE RTPLT I G  E + +             
Sbjct: 368 RLE--------------QLRKDFIANVSHEFRTPLTVIKGSIEALNDGAIEK--KEDIER 411

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           Y + I     ++  +V DLL++S+++SGK++++ E V +   +S+    +Q  A +K+I 
Sbjct: 412 YYSRILSETKILQRLVGDLLELSRLQSGKISVNEEKVHIPSLLSDVTKSMQTIAVKKQIS 471

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           I  S    +P +L D   ++Q+    + NAI ++P   +I I         + +++ D G
Sbjct: 472 IEYSPIEAVPPVLGDYDRLRQLFTIFIDNAIKYSPEKTKISIEIAVK--GTLEIKIADKG 529

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
            G++  EL    + F +   S      GTGLGL +AK ++  + G   + S+  +GT + 
Sbjct: 530 YGISEEELPYVWERFYKTDKS--RESNGTGLGLSIAKHLIQLHGGNVTMQSSLEEGTTVT 587

Query: 806 IIFP 809
           +  P
Sbjct: 588 VYLP 591


>gi|237747982|ref|ZP_04578462.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
 gi|229379344|gb|EEO29435.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
          Length = 762

 Score =  284 bits (726), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 81/258 (31%), Positives = 133/258 (51%), Gaps = 8/258 (3%)

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           Q +  L  A + A+  ++ KS FL  +SH+IRTP+ AIIG + +       P    +  +
Sbjct: 224 QMRQILRQALESAQTANAAKSQFLFNMSHDIRTPMNAIIGMTTLALIHLNEP---QKIRD 280

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           Y   I  S   +L+++ND+LD+SKIE+GK+ L+ E   L E +    +++   A+ + + 
Sbjct: 281 YLVKISSSSKHLLELINDVLDMSKIENGKIALNDEEFVLPELIEHFCTIILQQAHTRHLT 340

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT-----HTSNEEVILR 740
           +  +      ++  D   + Q+ LNI  NA+ FTP+GG+I I        +         
Sbjct: 341 LDINTDLIHEKVTGDTLRINQMLLNIAGNALKFTPAGGKIDIQIRELPPQYAGYGTYQFI 400

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           + DTG+GM    +EK  +PF +  NS   + EGTGLG+ + K +VD   G+  + S P K
Sbjct: 401 ISDTGIGMPADFIEKIFEPFERAHNSIGNKIEGTGLGMAITKNIVDMMNGRIDVESEPGK 460

Query: 801 GTLIEIIFPLYDTSHPHD 818
           GT   +  PL   +  +D
Sbjct: 461 GTTFTVTVPLKLQNAEND 478


>gi|301061433|ref|ZP_07202203.1| PAS domain S-box protein [delta proteobacterium NaphS2]
 gi|300444472|gb|EFK08467.1| PAS domain S-box protein [delta proteobacterium NaphS2]
          Length = 662

 Score =  283 bits (725), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 80/415 (19%), Positives = 162/415 (39%), Gaps = 32/415 (7%)

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR--KMEIEVMQLCSILEATSDGI 465
              L    +           +         ++ ++++R   ++    +  S++E+  D I
Sbjct: 261 RQFLFQGLVILVILAGVLAIVLFEMRWSRILEKKVHQRTEALKKSEERYRSLVESAEDFI 320

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
             ++  G  LS N   +  FG   E  L K       ++        +  +         
Sbjct: 321 FSVDPAGKFLSVNSFTANFFGSRPEAFLGKELASQFPEDVAEKQLALIKRVYKHKKSMRD 380

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKE 581
           E        +   + +      L               DI+E K  + +L + +K+A   
Sbjct: 381 EFELKTGDHQ---IWISANFMPLKNEDGEVSAVLCIARDITENKVLERQLINTEKLASLG 437

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
           +       A V+HE+  PL  ++GF +++  +        +  E    I+R G     +V
Sbjct: 438 T-----LAAGVAHEVNNPLGVMLGFCDLLLRK---TEKGTQTFEDLKTIERQGLHCKQVV 489

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701
            +LL  +++E G          L+  V++ I++V+       + +  S A+++P +  + 
Sbjct: 490 ENLLSFARVEEGDSEFA----DLNYCVNDIINVVKHTLEMSHVELVQSLADDVPMVKGNP 545

Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTS-NEEVILRVRDTGVGMTNYELEKAMKPF 760
           R ++Q+ LN+++NA+     GG + I T     + + +++  D GVG+   +++   +PF
Sbjct: 546 RQLQQVFLNLINNAVVAMKGGGVLTIRTGQERIHRKAVVQFEDNGVGIKEEDMDHIFEPF 605

Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST----PAK--GTLIEIIFP 809
                     GEGTGLGL ++  ++    G     S     P K  GT+  I  P
Sbjct: 606 FTTKP----EGEGTGLGLFVSYGIIAKYGGSLDCVSHAEGIPGKPSGTIFTIKLP 656



 Score = 48.9 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/145 (12%), Positives = 39/145 (26%), Gaps = 8/145 (5%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTW- 143
           F +++D  G    ++       G+     +G    +++     D       L+KR     
Sbjct: 319 FIFSVDPAGKFLSVNSFTANFFGSRPEAFLGK---ELASQFPEDVAEKQLALIKRVYKHK 375

Query: 144 -YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
              +       G +  + I    +P+ + + E S      I      +          +K
Sbjct: 376 KSMRDEFELKTGDHQ-IWISANFMPLKNEDGEVSAV--LCIARDITENKVLERQLINTEK 432

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQ 227
             S           V      +   
Sbjct: 433 LASLGTLAAGVAHEVNNPLGVMLGF 457


>gi|254294996|ref|YP_003061019.1| Hpt sensor hybrid histidine kinase [Hirschia baltica ATCC 49814]
 gi|254043527|gb|ACT60322.1| Hpt sensor hybrid histidine kinase [Hirschia baltica ATCC 49814]
          Length = 1008

 Score =  283 bits (725), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 72/249 (28%), Positives = 124/249 (49%), Gaps = 11/249 (4%)

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           ++  +    A+K+A   +  KSDFLA +SHEIRTP+  ++G +E+I         + +  
Sbjct: 297 RRVLHDQVKARKLALSSNQIKSDFLATMSHEIRTPMNGVLGMAELIL----SAKPSKKIE 352

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
            YA  I  SGN +  I++D+LD SKIE+G+M L     ++ E + E   L  + A +K +
Sbjct: 353 SYAETILSSGNSLQRIIDDILDFSKIEAGRMELERVDCNVVELIDETGQLFAMRAQDKGV 412

Query: 685 LIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIII-----STTHTSNEEV 737
            I      ++P  +  D    +Q+  N +SNAI FT +G  Q+ +      +        
Sbjct: 413 EISIFSDPDMPSNVFLDPVRFRQVLDNFVSNAIKFTNTGSIQVKVFEIPDESLDEDGIRF 472

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
            + V DTG+G++     +  + F Q   S   +  GTGLGL + +++++   GK  + S 
Sbjct: 473 RVEVVDTGIGISEEAQSRIFEKFSQADTSTTRKFGGTGLGLSICQSIIELANGKIGVDSV 532

Query: 798 PAKGTLIEI 806
             +G+    
Sbjct: 533 EGEGSTFWF 541


>gi|144900532|emb|CAM77396.1| Signal transduction histidine kinase [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 640

 Score =  283 bits (725), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 78/266 (29%), Positives = 122/266 (45%), Gaps = 7/266 (2%)

Query: 551 SSCYSL--TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
              + L   +    E K  +  L  A+  AE+ +  KS FLA V HEIRTPL  I+G + 
Sbjct: 122 DDGFILSRVVRYAVERKNAEQALREARDKAEEAAQVKSLFLATVGHEIRTPLNGILGMAR 181

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
           ++ +       + R   +A  +  SG L+L +VND+LD S++E+  + L      L   V
Sbjct: 182 LLLDTPL----DQRQKVFAETVVSSGELLLGLVNDILDFSRLEADGLTLETTSFDLLNMV 237

Query: 669 SEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIII 727
            +   L+   A +K + +   F   +  ++  D   ++Q+ LN++ NAI FT +G  +I 
Sbjct: 238 EDIRLLMAPRAADKGLTLGCRFPPEVQRQVSGDPLRLRQVLLNLVGNAIKFTANGSVMIA 297

Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
                ++  V   V DTG+G+     +     F Q  +S   R  G GLGL + K +V  
Sbjct: 298 VAKEEASGMVRFSVSDTGIGIPEEARDILFNEFSQADSSVARRYGGAGLGLAICKRLVTL 357

Query: 788 NMGKFYIFSTPAKGTLIEIIFPLYDT 813
             G     STP  GT      P  D 
Sbjct: 358 MGGAIGFDSTPGSGTQFWFRIPFSDA 383


>gi|254446715|ref|ZP_05060190.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198256140|gb|EDY80449.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 778

 Score =  283 bits (725), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 95/472 (20%), Positives = 184/472 (38%), Gaps = 34/472 (7%)

Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405
            S   +    S   +     ++       L+  + I   +LY +        A     + 
Sbjct: 57  DSIARIVASNSEAALGFEDPVTAEEYVATLNQESDIVRAVLYDAQGQPF---ATYLRDRS 113

Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465
           +   S+           +                  +      I+   L S+L      I
Sbjct: 114 DTTPSIPQYTGGKVSPAKITFVREVRIEGELLGTLLVEASTRAIQEQFLLSLLN----AI 169

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
            +++  G I+      +   GY ++ ++ +P                   I +    +  
Sbjct: 170 IMLSV-GTII------AGFIGYGIQRLITRPLQEL----EGLATKVSRDRIYTRRATKRY 218

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN-KLSHAKKIAEKESSH 584
           E   +GS  E     L  +  +            D+      +  +L  A + A+  +  
Sbjct: 219 EDE-IGSLVESFNFMLESVQTRDEE---IQSNNRDLEMEVAARTIELRTAMEKAQSANKA 274

Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
           KS+FL+ +SHE+RTP+ AI+G S ++ ++      +     Y   I  S + +L ++ND+
Sbjct: 275 KSEFLSTMSHELRTPMNAIVGMSSLLMDKDL----DDERQSYIKIIRSSSDALLSLINDV 330

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRS 703
           LD SKIESG ++L  +P +L   + EA+ +V     +  I    +    +P I+  D+  
Sbjct: 331 LDYSKIESGHLDLEDQPFNLVNCLEEAMDIVAAPRRDAPIDFIVTIDPKLPAIVKGDVTR 390

Query: 704 VKQIALNILSNAIHFTPSGGQIIIS-----TTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
           ++Q+ +N+L NA+ FT  G  + +         + N    + + DTG+G+ +    +  +
Sbjct: 391 LRQVLINLLGNAVKFTQKG-HVWLEAKCCVVGESENVFASIAIHDTGIGIPDDRKHRLFQ 449

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            F Q+ +S   R  GTGLGL +++ +  A  G   + S    G+  +   PL
Sbjct: 450 TFSQVDSSMTRRFGGTGLGLAISQRLAMAMGGIIEVESEVGSGSTFQFTIPL 501


>gi|148975516|ref|ZP_01812387.1| putative sensor histidine kinase [Vibrionales bacterium SWAT-3]
 gi|145964944|gb|EDK30195.1| putative sensor histidine kinase [Vibrionales bacterium SWAT-3]
          Length = 684

 Score =  283 bits (725), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 84/278 (30%), Positives = 133/278 (47%), Gaps = 8/278 (2%)

Query: 536 EKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
              ++L + +  L F+    L +H + E K+       A   A+K S  KS FLA +SHE
Sbjct: 115 GLTVNLIVALALLTFAFSLILFIHRLFELKRNNLSYQEAADKAQKASEAKSLFLATMSHE 174

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           +RTP+  ++G +++IK             + A  I  SG  ++ I+ND+LD SK+E GKM
Sbjct: 175 LRTPMNGVLGIAQIIKEDSQSADT----RKQAQIIIDSGQHLVTILNDILDFSKVEQGKM 230

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRT--SFANNIPRILADLRSVKQIALNILS 713
            L   P S+ + V+     +   A +K I      +   NI +++ D    +QI  N+  
Sbjct: 231 ELELSPFSVTDVVTHLDKTLTPLATDKGISFVIKDNIPTNI-QLVGDSARTRQILFNLAG 289

Query: 714 NAIHFTPSGG-QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           NA+ FT SG  ++      T+   V + V DTG+G+   +++     F Q   S   +  
Sbjct: 290 NAVKFTESGKVEVEFEIAPTTPPSVNIMVSDTGIGIAEDKVDHIFTAFEQAELSTTRKFG 349

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           GTGLGL + K +V+   G   + S    GT   I  PL
Sbjct: 350 GTGLGLSIVKQLVELMGGTIDVSSQLNMGTCFTISLPL 387


>gi|186471683|ref|YP_001863001.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia phymatum
           STM815]
 gi|184197992|gb|ACC75955.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia phymatum
           STM815]
          Length = 789

 Score =  283 bits (725), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 89/498 (17%), Positives = 175/498 (35%), Gaps = 40/498 (8%)

Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
           F +   G +   NP    +  Y S + I     +  LL                     +
Sbjct: 29  FALTPDGFISTWNPGAAAIYGYTSDEIIGKHASI--LLPDDLHEREEFESEFHRAHEKGS 86

Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
            +    R    +    + L  + +     +     +    +  ++ + R     +     
Sbjct: 87  SVTEGWR----KRKDGSVLWASIVTTALVDANGTLLGFAKLVRDESEKRKAHEAVIGSER 142

Query: 453 QLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
           +   +++  SD  I +++ +G++ + N    ++ GY  E+I+   F+ F   +  +    
Sbjct: 143 RFRLLVDGVSDYAIFMLSPDGLVTNWNNGARRIKGYTAEEIIGSHFSRFYTPDDAAAGLP 202

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQE 567
               +         E       ++       +++  +   S   L       D++E ++ 
Sbjct: 203 Q-RALEIAAREGRFESEGWRVRRDGTRFVAHVVVDAIRDDSGTLLGFAKITRDVTERREA 261

Query: 568 KNKLSHAKKIAEKESSH--KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
              L  AK    +             V+H+    L  + G  E+++++      +   + 
Sbjct: 262 DKLLETAKAELFQAQKMEGIGKLTGGVAHDFNNVLQVLRGNLELLQSRC---ARDQWTMA 318

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
                  +      + + LL   + ++    L  EPV+L   V  A  L++  A  + I 
Sbjct: 319 RLGNAIEAVERGATLASQLLAFGRRQA----LRPEPVNLGAMVRGADDLLR-RALGETIE 373

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT--------------H 731
           + T  A  +     D   ++ + LN+  NA    P GG++ +                  
Sbjct: 374 VETVVAAGLWNAFVDGHQLENVLLNLAINARDAMPDGGKLTLELANAMLDDSYVRSFSDV 433

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
            + + V+L V DTG GM+   LEKA  PF          G+GTGLGL +A   V  + G 
Sbjct: 434 PAGQYVMLAVTDTGCGMSADVLEKAFDPFFTTKP----EGQGTGLGLSMAYGFVKQSGGH 489

Query: 792 FYIFSTPAKGTLIEIIFP 809
             I+S P  GT + I  P
Sbjct: 490 IRIYSEPGHGTAVRIYLP 507



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 36/384 (9%), Positives = 96/384 (25%), Gaps = 40/384 (10%)

Query: 60  ESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLC 119
             + N +  D+E+         T    + +   G++   +       G  + ++IG    
Sbjct: 2   PRIENADSRDAEHWATLWAASLTELAVFALTPDGFISTWNPGAAAIYGYTSDEIIGKHAS 61

Query: 120 DVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFR 179
            +      +      +  +        T  W        +   +    +   N    GF 
Sbjct: 62  ILLPDDLHEREEFESEFHRAHEKGSSVTEGWRKRKDGSVLWASIVTTALVDANGTLLGFA 121

Query: 180 GFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL----R 235
              +V                +++F  L +    ++        + +  +          
Sbjct: 122 K--LVRDESEKRKAHEAVIGSERRFRLLVDGVSDYAIFMLSPDGLVTNWNNGARRIKGYT 179

Query: 236 MKNKVSSLTEYYAHKDDVLKTEKYPLL--TSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293
            +  + S    +   DD         L   + E     +      +  ++        ++
Sbjct: 180 AEEIIGSHFSRFYTPDDAAAGLPQRALEIAAREGRFESEGWRVRRDGTRFVAHVVVDAIR 239

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP--------IPFFVYSHGNLFYAN 345
           ++S     +       +     D+        + +               +   N+    
Sbjct: 240 DDSGTLLGFAKITRDVTERREADKLLETAKAELFQAQKMEGIGKLTGGVAHDFNNVLQVL 299

Query: 346 PSFLLLTKYK-------------SVDDIEIAGGLSTLLDAPKLSDNNAIKPV-------- 384
              L L + +             +++ +E    L++ L A         +PV        
Sbjct: 300 RGNLELLQSRCARDQWTMARLGNAIEAVERGATLASQLLAFGRRQALRPEPVNLGAMVRG 359

Query: 385 ---MLYRSDRTCIAASARLHTIQW 405
              +L R+    I     +    W
Sbjct: 360 ADDLLRRALGETIEVETVVAAGLW 383



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/118 (14%), Positives = 46/118 (38%), Gaps = 5/118 (4%)

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
            +  +  +G I + N   + ++GY  ++I+ K  ++ L  +       + +E      + 
Sbjct: 27  AVFALTPDGFISTWNPGAAAIYGYTSDEIIGKHASILL-PDDLHEREEFESEFHRAHEKG 85

Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKI 577
           +         K+  +L   I+   L  ++   L     + D SE ++    +  +++ 
Sbjct: 86  SSVTEGWRKRKDGSVLWASIVTTALVDANGTLLGFAKLVRDESEKRKAHEAVIGSERR 143



 Score = 58.1 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 22/260 (8%), Positives = 59/260 (22%), Gaps = 18/260 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK---RQNT 142
            + +   G +   +    +  G  A ++IG                     L+   R+  
Sbjct: 156 IFMLSPDGLVTNWNNGARRIKGYTAEEIIGSHFSRFYTPDDA-AAGLPQRALEIAAREGR 214

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
           +  +      +GT     + + A  I   +    GF    I        +   L +    
Sbjct: 215 FESEGWRVRRDGTRFVAHVVVDA--IRDDSGTLLGFAK--ITRDVTERREADKLLETAKA 270

Query: 203 KFSHLHEIKKGHSSVEKEKYD-------IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255
           +     +++          +D       +            +++ +      A +     
Sbjct: 271 ELFQAQKMEGIGKLTGGVAHDFNNVLQVLRGNLELLQSRCARDQWTMARLGNAIEAVERG 330

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
                 L +       + +   +                 + E    ++     +     
Sbjct: 331 ATLASQLLAFGRRQALRPEPVNLGAMVRGADDLLRRALGETIEVETVVAAGLWNAFVDGH 390

Query: 316 DEGENLTPETV---DKCPIP 332
                L    +   D  P  
Sbjct: 391 QLENVLLNLAINARDAMPDG 410


>gi|269964118|ref|ZP_06178418.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269831143|gb|EEZ85302.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 1229

 Score =  283 bits (725), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 92/376 (24%), Positives = 167/376 (44%), Gaps = 14/376 (3%)

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
           E E   L  I++  +  + I   +  I  +N ++ +        I  +     L  N   
Sbjct: 548 EKEKQWLMVIIQEINSIVFIHGEDNQIQMSNCSLYRNNRCKGCTIQSRKGAKPLVDNVRE 607

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII-KKLPFSSCYSLTMHDISEWKQ 566
                L ++++                 + +   R  I             + DI+E K+
Sbjct: 608 -----LRQVIAGKRISDTTASNACKLGIQHVYRERKSILSPSSKKKFVLTVLQDITEQKE 662

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
            +  L  A++ A+     + +FLA +SHE+RTPL+A  G  +++  Q           E 
Sbjct: 663 REFALIDAQEKAQTAVRARENFLATMSHELRTPLSAAHGLLDLLTRQ----TNRESSKEL 718

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
                RS N +  +V+++LD SK+E+G++ +     +L   +S+ +   +  A  K +  
Sbjct: 719 ITQAMRSLNHLNLLVDEVLDYSKLEAGQLKVTPTKTNLVTTLSDVVRSFEPKAVSKGLDY 778

Query: 687 RTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           R +F   + P +  D   + QIA N+LSNA+ FT  G +I +S       ++IL++ DTG
Sbjct: 779 RVTFKPFVNPWLKVDAVRLVQIATNLLSNAVKFTTDG-EISVSVAMNE-GQLILKIADTG 836

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +GMT  +L+  ++PF Q  ++   +  GTGLGL +   +V+   G   I S    GT + 
Sbjct: 837 IGMTETQLDGILQPFVQADDTITRKYGGTGLGLSIVDRLVECMGGDLCIDSQFGLGTTMV 896

Query: 806 IIFPL-YDTSHPHDCI 820
           +  P+ +  + P   I
Sbjct: 897 VKLPVIFCEAEPQAAI 912


>gi|77359078|ref|YP_338653.1| sensor protein [Pseudoalteromonas haloplanktis TAC125]
 gi|76873989|emb|CAI85210.1| putative sensor protein; similar to LuxQ in Vibrio harveyi, similar
           to ArcB sensor in E. coli [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 896

 Score =  283 bits (725), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 82/246 (33%), Positives = 126/246 (51%), Gaps = 7/246 (2%)

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           ++   L   K+ A++ S  KS FLA +SHE+RTP+  I G   +   Q        +   
Sbjct: 508 RQTRTLRQEKQKADEASQIKSQFLANMSHEVRTPINGIKGLHYLALQQN----DWQQART 563

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           Y    D +  ++L ++NDLLD SK+E+GK++L  EPV +     E I+L+Q   + K + 
Sbjct: 564 YIEQADGALGVLLRVLNDLLDFSKMEAGKLDLMQEPVDIGRLAEEVINLIQFEVSVKSLE 623

Query: 686 IRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744
           I+  +  N    I  D   +KQ+ LN+L+NA+ FT  G  I +     S     L V DT
Sbjct: 624 IKLDYDKNTNLMINTDAIRLKQVLLNLLNNAVKFTAQGS-ITLKI-WQSKTMTYLSVSDT 681

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G++    +K  +PF Q  NS   +  GTGLGL + K +V+   G   + ST  +G+  
Sbjct: 682 GIGISKEAQKKLFRPFAQADNSTSRQYGGTGLGLSICKKLVELMGGAIDLKSTAGQGSTF 741

Query: 805 EIIFPL 810
               PL
Sbjct: 742 TFSLPL 747


>gi|330502139|ref|YP_004379008.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina NK-01]
 gi|328916425|gb|AEB57256.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina NK-01]
          Length = 971

 Score =  283 bits (725), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 105/483 (21%), Positives = 200/483 (41%), Gaps = 19/483 (3%)

Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
             V     +F+                I        L  A        ++   L      
Sbjct: 358 LLVVDEEQIFHDTNQLAERYLQIGYLLIAGLAAFYLLFFAL-----MWLRSRHLSNQLAE 412

Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
            I     + T     + S A+      + ++  E + Q G        + ++ + +    
Sbjct: 413 PIDGIVDMATSLGQGKYSPAVPDSHIAEVSRLAEAVQQAG-----KQLKASEHERQEAQS 467

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
            L  +LE+T++ +  I+   + +  +    + FG     +    F   +  +    +  +
Sbjct: 468 ILQLVLESTTESLWQIDTRDLTIDLSERFVRRFGLGARHLTLSEFNQRVHPDDLERLR-H 526

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIII-KKLPFSSCY----SLTMHDISEWKQE 567
           L ++ + +  +  +          + L L       L   + +    + T  DI+  KQ 
Sbjct: 527 LRKLFADNGEEYFDAEYRYLDCRGEYLWLLSRGKVLLRDENGWPLRIAGTHVDITRLKQV 586

Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
           ++ L HA   A   S  KS FL+ +SHE+RTPL AI GF+++I+ +           +Y+
Sbjct: 587 EDDLRHASLEALAASQAKSRFLSSMSHELRTPLNAIHGFAQLIEMEAQDKHDAKLEADYS 646

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
             I  +   +  +V+D+LD+S IES +  L F+P+ +   ++    LVQ    +K++ ++
Sbjct: 647 REIVNASRHLTSLVDDILDLSSIESRRQQLQFQPIEIGALLTGCAELVQPEVQQKQLQLQ 706

Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
              A + P  +  D R V+QI LN+LSNAI +    G I +     ++  V L V DTG 
Sbjct: 707 VMEAADPPLFVQGDPRRVRQILLNLLSNAIKYNSPRGTIRMGYEVRAD-CVRLWVDDTGP 765

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+++ +L +  +PF ++   +     GTG+GL L + +     G+  + S P  G+   +
Sbjct: 766 GLSSEQLAQLFQPFQRL-GRESSNIPGTGIGLVLCRELATLMDGEIGVRSEPGVGSRFWL 824

Query: 807 IFP 809
             P
Sbjct: 825 DIP 827



 Score = 39.2 bits (90), Expect = 2.9,   Method: Composition-based stats.
 Identities = 17/177 (9%), Positives = 38/177 (21%), Gaps = 3/177 (1%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            W ID      ++SE   +  G  A  +             ++   H+  L       Y 
Sbjct: 480 LWQIDTRDLTIDLSERFVRRFGLGARHLTLSEFNQRVHPDDLERLRHLRKLFADNGEEYF 539

Query: 146 KTTLWPIEGTNLYVPIDLAAL-PIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
                 ++    Y+ +       +   N      R  G               +    + 
Sbjct: 540 DAEYRYLDCRGEYLWLLSRGKVLLRDENG--WPLRIAGTHVDITRLKQVEDDLRHASLEA 597

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
               + K    S    +              ++ +     +     D   +      
Sbjct: 598 LAASQAKSRFLSSMSHELRTPLNAIHGFAQLIEMEAQDKHDAKLEADYSREIVNASR 654


>gi|115359830|ref|YP_776968.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ambifaria
           AMMD]
 gi|115285118|gb|ABI90634.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ambifaria
           AMMD]
          Length = 530

 Score =  283 bits (725), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 72/371 (19%), Positives = 154/371 (41%), Gaps = 23/371 (6%)

Query: 453 QLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
           +  +++ + +D  + +++  G I + N    ++ G+  ++I+   F+ F   +  +    
Sbjct: 30  RFQTVVASITDYAVFMLDPHGNIATWNAGAERIKGFRTDEIIGSHFSRFYPADAIAAGRP 89

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQE 567
                 +       +  +    K+       + I  +         +     D++E K+ 
Sbjct: 90  AHALEAAAAYGH-FQDESWRVRKDGSRFWASVTITAVRDESHQLRGFIKITRDMTERKRV 148

Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRT---PLTAIIGFSEVIKNQRFGPLGNPRYI 624
           +          E  +     F+A ++HE+R    PL   IG  + + +   GP       
Sbjct: 149 EE--------LEAATRRLDVFIATLAHELRNQLAPLRHTIGILQGLPSSELGPA----LT 196

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           +  +  DR    ++ +V+DLLDI +I+S K++L   PV++ + V  ++  +Q   + +  
Sbjct: 197 QCKDIADRQIEQLVRLVDDLLDIGRIKSDKVDLKKAPVNVRDIVYRSVQGIQPKVDARGQ 256

Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744
            I          +  D   + Q+  N+L NA  ++P+G +I +      N  V + + D 
Sbjct: 257 RIIVRLPPAPVIVHGDDVRLVQVLYNLLDNASKYSPNGERIELHVRTEQN-VVAIEIVDY 315

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTL 803
           G+G+     E    PF Q   +++    G GLGL ++K  VD + G     S     G+ 
Sbjct: 316 GIGIVPGAQESIFDPFEQEHAAERHAPGGLGLGLAISKKFVDLHGGGITADSAGIGAGST 375

Query: 804 IEIIFPLYDTS 814
             +  P+ +++
Sbjct: 376 FTVRLPIAESN 386



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/246 (8%), Positives = 60/246 (24%), Gaps = 6/246 (2%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ--NTW 143
            + +D HG +   +    +  G    ++IG           I        L        +
Sbjct: 43  VFMLDPHGNIATWNAGAERIKGFRTDEIIGSHFSRFYPADAIAAGRPAHALEAAAAYGHF 102

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             ++     +G+  +  + + A  +   + +  GF    I            L     + 
Sbjct: 103 QDESWRVRKDGSRFWASVTITA--VRDESHQLRGF--IKITRDMTERKRVEELEAATRRL 158

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
              +  +     +               P   +   ++   +    + + L      LL 
Sbjct: 159 DVFIATLAHELRNQLAPLRHTIGILQGLPSSELGPALTQCKDIADRQIEQLVRLVDDLLD 218

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
                  + +        +    +    +Q       + +  R  P+      +   L  
Sbjct: 219 IGRIKSDKVDLKKAPVNVRDIVYRSVQGIQPKVDARGQRIIVRLPPAPVIVHGDDVRLVQ 278

Query: 324 ETVDKC 329
              +  
Sbjct: 279 VLYNLL 284



 Score = 41.2 bits (95), Expect = 0.73,   Method: Composition-based stats.
 Identities = 12/130 (9%), Positives = 39/130 (30%), Gaps = 7/130 (5%)

Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
           F +  HGN+   N     +  +++ + I      S    A  ++       +    +   
Sbjct: 44  FMLDPHGNIATWNAGAERIKGFRTDEIIG--SHFSRFYPADAIAAGRPAHALEAAAAYG- 100

Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
                     ++ +     A +       ++  +      I  +  + +  + ++E    
Sbjct: 101 --HFQDESWRVRKDGSRFWA-SVTITAVRDESHQLRGFIKITRDMTERKRVE-ELEAATR 156

Query: 453 QLCSILEATS 462
           +L   +   +
Sbjct: 157 RLDVFIATLA 166


>gi|320160492|ref|YP_004173716.1| two-component sensor histidine kinase [Anaerolinea thermophila
           UNI-1]
 gi|319994345|dbj|BAJ63116.1| two-component sensor histidine kinase [Anaerolinea thermophila
           UNI-1]
          Length = 669

 Score =  283 bits (725), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 90/576 (15%), Positives = 199/576 (34%), Gaps = 46/576 (7%)

Query: 272 QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC-- 329
           +  + T        +     ++++  +    +      +          +  E  ++   
Sbjct: 96  RNPWITRWGEMRYFEWSNTVIRDDEGKVAFVIGMGMDVTEKEETLRTSQVMRERFERVFR 155

Query: 330 --PIPFFVYSHG--NLFYANPSFLLLTKYKSVDD----------IEIAGGLSTLLDAPKL 375
             P+   + S     +   N  F  + +                +E       L+     
Sbjct: 156 TNPLGIALVSGDSLTINDCNERFAAMLETPRSQLIGKDLVTLGMLETPYRFQELVYRHAR 215

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE---------------- 419
             N+  +   L  +          L  +    E  L +T                     
Sbjct: 216 FGNSLTEERALTTATGKTFHGRIALEPMDLMNEPMLVLTLQDVTSYVQVEYRLKQISADL 275

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
                  +     +  E       +R +E+   +L  I+    + IAI +  G ++  N+
Sbjct: 276 GRKVKESSAAYETVRRELQAEVGRRRALELSSRRLLDIIWEAGEAIAITDARGWVVYLNK 335

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQ--NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
           +   L G      + +  +   E+  N P V+   L  +                    +
Sbjct: 336 SARGLLGLDEHTPIAQHRSTLYEKYKNHPIVVEKILPALHQDG---LWRGELDWDPGTGE 392

Query: 538 LLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
            + L + I      +     +SL  HDI+E K+    +    +  ++E+  +S   +  S
Sbjct: 393 PVYLSMTILAHHDENGEVQNFSLIAHDITEEKRATEAIKREFQREKEEAVLRSYLFSATS 452

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           H+ RTPL+AI+  +E +           +  ++ + I  +   +  ++ D+L + ++E+ 
Sbjct: 453 HQFRTPLSAILSSTE-LLETYGQKWDWDKVSQHLHRIKTAAQQMNVLLEDILKVLRLETA 511

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713
           +  L  +PV L     E    V+   + +R  I        P +L+D   + Q+  N+L+
Sbjct: 512 REPLRVQPVDLRNLFRECADAVKNALDPQR-KIFLECEEQHPTLLSDSDLLWQVLENLLT 570

Query: 714 NAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
           NAI ++     +  +     +    +++RD G+G+   E+    +PF +   S  +   G
Sbjct: 571 NAIKYSSPQTWVYATIRPVESGY-QIQIRDEGMGVPPDEIPLVFEPFYRA--SNTVGIPG 627

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +GLGL + +  ++   G     S    G+++ I  P
Sbjct: 628 SGLGLMIVRKALERIHGTIDFSSELNHGSVVSITLP 663



 Score = 70.4 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/149 (12%), Positives = 47/149 (31%), Gaps = 3/149 (2%)

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL-EQNTPSV 508
               L ++L      + +++ +  I+  NR   ++ GY   ++                 
Sbjct: 19  SRNALENLLNTFQGVVVVLDPQFRIVFFNRTAEEVTGYTQTEVQGMNLADLFLPFEEKKG 78

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT--MHDISEWKQ 566
           +     ++LSL L        +    E +       + +        +     D++E ++
Sbjct: 79  VKDIFEQLLSLGLPNRYRNPWITRWGEMRYFEWSNTVIRDDEGKVAFVIGMGMDVTEKEE 138

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHE 595
                   ++  E+        +A VS +
Sbjct: 139 TLRTSQVMRERFERVFRTNPLGIALVSGD 167



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 44/419 (10%), Positives = 103/419 (24%), Gaps = 57/419 (13%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP--NNHIGDLLKRQNTWYGK 146
           +D    +   +    +  G    ++ GM L D+           +    LL        +
Sbjct: 37  LDPQFRIVFFNRTAEEVTGYTQTEVQGMNLADLFLPFEEKKGVKDIFEQLLSLGLPNRYR 96

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI-VHVNRVDNDPRALGKRLDKKFS 205
                  G   Y   + +   I     + +   G G+ V           + +   ++  
Sbjct: 97  NPWITRWGEMRYF--EWSNTVIRDDEGKVAFVIGMGMDVTEKEETLRTSQVMRERFERVF 154

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY----------------YAH 249
             + +     S +    +  +++        ++++                         
Sbjct: 155 RTNPLGIALVSGDSLTINDCNERFAAMLETPRSQLIGKDLVTLGMLETPYRFQELVYRHA 214

Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYT------------------KKQYFGT 291
           +     TE+  L T+   +   +     ++L                       KQ    
Sbjct: 215 RFGNSLTEERALTTATGKTFHGRIALEPMDLMNEPMLVLTLQDVTSYVQVEYRLKQISAD 274

Query: 292 LQNNSKESFEYLSHRNHPSL-----SAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYAN 345
           L    KES                     +       + + +      +    G + Y N
Sbjct: 275 LGRKVKESSAAYETVRRELQAEVGRRRALELSSRRLLDIIWEAGEAIAITDARGWVVYLN 334

Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405
            S   L        I      STL +  K       K +     D            + W
Sbjct: 335 KSARGLLGLDEHTPIAQ--HRSTLYEKYKNHPIVVEKILPALHQDGLWR------GELDW 386

Query: 406 NRENSLAMTFIPFEKA--NQFPENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEA 460
           +      +       A  ++  E    + I  +  + +     ++ E    +  ++L +
Sbjct: 387 DPGTGEPVYLSMTILAHHDENGEVQNFSLIAHDITEEKRATEAIKREFQREKEEAVLRS 445


>gi|218438404|ref|YP_002376733.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 7424]
 gi|218171132|gb|ACK69865.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 7424]
          Length = 404

 Score =  283 bits (725), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 76/247 (30%), Positives = 137/247 (55%), Gaps = 2/247 (0%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E ++++ ++    +  ++ S  KS FLA +SHE+RTP+ AI+GFS+++  +   PL  P 
Sbjct: 155 ELERQRRQIEIQNEQLQETSRLKSQFLATMSHELRTPINAIMGFSQMLLRRYPEPLT-PA 213

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             +    I  +   +L ++ND+LD SKIE+GK+ LH     L + V      ++  A  K
Sbjct: 214 QTDLVQRIFDNSKNLLTLLNDVLDFSKIEAGKLILHPHEFDLKQLVVLTTEELRSLAISK 273

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
            + ++       P+I+ D   +++I +N+LSNAI FT +GG + ++    + + + + V 
Sbjct: 274 NLSLQIQVEVENPKIINDQSCLRRILVNLLSNAIKFTETGG-VSVTVWELNPDLMAIAVE 332

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG+G+    LE   + F Q   +   +  GTGLGL ++++++    GK  + S   KG+
Sbjct: 333 DTGIGIAQEHLEHIFEVFRQADQTLTRKYGGTGLGLAISESLIKMMHGKITVTSELGKGS 392

Query: 803 LIEIIFP 809
           + +I FP
Sbjct: 393 IFQIEFP 399


>gi|239625873|ref|ZP_04668904.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239520103|gb|EEQ59969.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 840

 Score =  283 bits (725), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 78/261 (29%), Positives = 125/261 (47%), Gaps = 10/261 (3%)

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
           + L +      K     L   K+ AE  +  KSDFL+++SHEIRTPL  I+G +E+    
Sbjct: 295 FFLLLR--HREKLSSELLLAEKERAEAANRAKSDFLSQMSHEIRTPLNGIMGMAEL---G 349

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
           +       R     + I  S   +L ++ND+LD+SKIESGK+ LH E   L + +    +
Sbjct: 350 KSHTGEPDRMRNCLDKITLSSTHLLSLINDILDMSKIESGKIELHMERFDLGQLLRALTT 409

Query: 674 LVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIII---ST 729
           +  + A  ++I         I   +  D   + QI  N+LSNA+ FTP+ GQ+ +     
Sbjct: 410 VFHVQAVSRQIDYHIFLYGEIEEYLTGDSLRLNQILTNLLSNALKFTPAQGQVSLNVSEL 469

Query: 730 THTSNE-EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
               +   +   VRDTG G+    +++  + F Q  +    +  GTGLGLP+ K  V+  
Sbjct: 470 RRDESGIWLRFEVRDTGRGIAPENIDRVFEAFTQENSGIARQYGGTGLGLPITKNFVEMM 529

Query: 789 MGKFYIFSTPAKGTLIEIIFP 809
            G   + S    G++  +  P
Sbjct: 530 GGSITVSSKVGAGSIFTVDIP 550


>gi|83311835|ref|YP_422099.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82946676|dbj|BAE51540.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 716

 Score =  283 bits (725), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 81/643 (12%), Positives = 194/643 (30%), Gaps = 37/643 (5%)

Query: 182 GIVHVNRVDNDPRALGKRLDKKFSHLHEIK--KGHSSVEKEKYDIFSQQSPPPHLRMKNK 239
             +              R     +   E    +   +      D  + +       + + 
Sbjct: 94  ATIRSEAAILTSLQREIRSRGGVAAFDETAWYQMFMAHLDLFSDDPADKPMHALFFVDST 153

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLN---QYTKKQYFGTLQNNS 296
             +     ++          P          ++     I+ +             +    
Sbjct: 154 GIASASSVSNPTRQADASMRPYFIFHRDHPGDELHISEISQSKITGLWVFFLTQRINGPD 213

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP----FFVYSHGNLFYANPSFLLLT 352
                 L                N   E      +P      +            F    
Sbjct: 214 GSFQGVLGMSLRI----------NRFEELFAHLRLPADGSIVIQRLDGAPLFRHPFTEAF 263

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD-RTCIAASARLHTIQWNRENSL 411
                  +    G+           +       +   +        A     +       
Sbjct: 264 ATSQPGSLPRVAGMVAKGAGAHEQVSPFDGKTRIIGYNVGRHYPILASATVTREGALAGW 323

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471
             T   F         +               +R+  +   +L   ++   + I   +  
Sbjct: 324 YRTLSWFTGLGLAALGLGAILFIFALKHLGSLEREARMR--RLSQTVDQNPNMILTTDSR 381

Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
           G+I   N +  +  G+  + ++     +     TP  +   L + +            + 
Sbjct: 382 GVIDYANSSFYRFTGFEPDQVIGATPRILKSDETPPEVFVDLWQTIRAGREWRG--ELVN 439

Query: 532 STKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
             ++ +     ++I  +         +     DISE K+ + +++      ++ +    +
Sbjct: 440 RRRDGQTYWASVVISPVLDEESGLCGFVGMQEDISERKRIEGRVAELVAELKRSNEELEN 499

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           F    SH++R PL  I  +   +  +R     +    E+  +       +  ++ DLL+ 
Sbjct: 500 FAYVASHDLRQPLRMINSYL-GLLRKRLAASFDQEAEEFFAFASDGARRLDLMIVDLLEF 558

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707
           S+I  GK +   E + L+  V++ +  + +   +    I  S A  +P I  D   + ++
Sbjct: 559 SRI--GKQS-TREMLDLNGVVADGMQNLAVAIRDCGAEI--SVAPGLPTIPGDRSELTRL 613

Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNE-EVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
             N++ NA+ + P   + ++  +      E IL VRD G+G+    LEK    F ++ + 
Sbjct: 614 FQNLIGNALKYCPEERKPVVDISCRDGGREWILSVRDNGIGIEAECLEKVFGIFQRMVS- 672

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            + + EGTG+GL + + + + + G+ ++ S    G+   +  P
Sbjct: 673 -RDKYEGTGIGLAVCRKIAEHHGGRIWVESVVDHGSTFHVALP 714



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/182 (12%), Positives = 52/182 (28%), Gaps = 12/182 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKRQNTWYGKT 147
            D+ G +   +    +  G    ++IG     + SD    +    +   ++    W G+ 
Sbjct: 378 TDSRGVIDYANSSFYRFTGFEPDQVIGATPRILKSDETPPEVFVDLWQTIRAGREWRGEL 437

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                +G   +  + ++  P+        GF   G+                L  +    
Sbjct: 438 VNRRRDGQTYWASVVIS--PVLDEESGLCGF--VGMQEDISERKRIEGRVAELVAELKRS 493

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
           +E  +  + V              P   + + +  L +  A   D    E +   +    
Sbjct: 494 NEELENFAYVASHDLR-------QPLRMINSYLGLLRKRLAASFDQEAEEFFAFASDGAR 546

Query: 268 SL 269
            L
Sbjct: 547 RL 548


>gi|261218576|ref|ZP_05932857.1| integral membrane sensor signal transduction histidine kinase
           [Brucella ceti M13/05/1]
 gi|261221784|ref|ZP_05936065.1| integral membrane sensor signal transduction histidine kinase
           [Brucella ceti B1/94]
 gi|261315201|ref|ZP_05954398.1| integral membrane sensor signal transduction histidine kinase
           [Brucella pinnipedialis M163/99/10]
 gi|261317242|ref|ZP_05956439.1| integral membrane sensor signal transduction histidine kinase
           [Brucella pinnipedialis B2/94]
 gi|261320575|ref|ZP_05959772.1| integral membrane sensor signal transduction histidine kinase
           [Brucella ceti M644/93/1]
 gi|261751910|ref|ZP_05995619.1| integral membrane sensor signal transduction histidine kinase
           [Brucella suis bv. 5 str. 513]
 gi|261754568|ref|ZP_05998277.1| integral membrane sensor signal transduction histidine kinase
           [Brucella suis bv. 3 str. 686]
 gi|265988281|ref|ZP_06100838.1| integral membrane sensor signal transduction histidine kinase
           [Brucella pinnipedialis M292/94/1]
 gi|265997748|ref|ZP_06110305.1| integral membrane sensor signal transduction histidine kinase
           [Brucella ceti M490/95/1]
 gi|260920368|gb|EEX87021.1| integral membrane sensor signal transduction histidine kinase
           [Brucella ceti B1/94]
 gi|260923665|gb|EEX90233.1| integral membrane sensor signal transduction histidine kinase
           [Brucella ceti M13/05/1]
 gi|261293265|gb|EEX96761.1| integral membrane sensor signal transduction histidine kinase
           [Brucella ceti M644/93/1]
 gi|261296465|gb|EEX99961.1| integral membrane sensor signal transduction histidine kinase
           [Brucella pinnipedialis B2/94]
 gi|261304227|gb|EEY07724.1| integral membrane sensor signal transduction histidine kinase
           [Brucella pinnipedialis M163/99/10]
 gi|261741663|gb|EEY29589.1| integral membrane sensor signal transduction histidine kinase
           [Brucella suis bv. 5 str. 513]
 gi|261744321|gb|EEY32247.1| integral membrane sensor signal transduction histidine kinase
           [Brucella suis bv. 3 str. 686]
 gi|262552216|gb|EEZ08206.1| integral membrane sensor signal transduction histidine kinase
           [Brucella ceti M490/95/1]
 gi|264660478|gb|EEZ30739.1| integral membrane sensor signal transduction histidine kinase
           [Brucella pinnipedialis M292/94/1]
          Length = 532

 Score =  283 bits (725), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 92/349 (26%), Positives = 168/349 (48%), Gaps = 4/349 (1%)

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
             ++ EGI+ S +   +KL G   + +        +           L ++ +    + +
Sbjct: 134 FGLDIEGIVSSVDGETAKLLGVQPKMLEGTALIDRVHVADRVQYLSLLADLRAGMATRKV 193

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
           +            +      +        +L    +   ++  ++++  K   E E   K
Sbjct: 194 DVRLRSIE-NGNPVFRAYRFEGAGSDRAITLIGRSLEGEQKLLDEIAMLKAELESERIGK 252

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
              LA VSHE+RTPL +IIGFS+++ ++  G L + R  EYA  I +SG+ +L++VN +L
Sbjct: 253 GRLLATVSHELRTPLNSIIGFSDMLTHEIGGKLASDRQREYAGLIHQSGHYLLELVNAVL 312

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
           D S++E+G  ++  +     +AV    +++   A +K +       N +  ++AD R+V+
Sbjct: 313 DNSRLETGTYSIAPQSFVFRDAVEMCTAVMLPQAEKKGVAFCHRVGNGVGELVADRRAVQ 372

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNE---EVILRVRDTGVGMTNYELEKAMKPFGQ 762
           QI LN+ +NA+ FT SGG + I       +    +   V DTG+G+   +L++   PF +
Sbjct: 373 QILLNLATNAVKFTQSGGCVTIDAARVMADGCPMLEFSVSDTGIGIEPEDLQRIGTPFVR 432

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
             NS     EG+GLGL + K +V+ + G   + S P +GT++ I  PL 
Sbjct: 433 AGNSYTQAQEGSGLGLSVVKGLVELHQGSMQLKSRPGEGTVVMIRLPLA 481


>gi|160899763|ref|YP_001565345.1| PAS/PAC sensor hybrid histidine kinase [Delftia acidovorans SPH-1]
 gi|160365347|gb|ABX36960.1| PAS/PAC sensor hybrid histidine kinase [Delftia acidovorans SPH-1]
          Length = 749

 Score =  283 bits (725), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 102/607 (16%), Positives = 198/607 (32%), Gaps = 44/607 (7%)

Query: 235 RMKNKVSSLTEYYAHKDDVLKTE-KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293
           R   +  +++                  L +  + LP  E F          +     L+
Sbjct: 3   RFPQRQPAMSSPDHSDPPRDDEHLPLHALLAPGADLPPVERFPPFQPEDDPLQALVAELR 62

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLT 352
           N  +E    + +R      A  +             P+P  V      +  AN       
Sbjct: 63  NYQREL--EIQNRVLDYSQAVAESASERFEALFASIPLPLLVVDEHDMVVQANAMAHSAF 120

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
           +    D + +        D  +           L R++   +              +   
Sbjct: 121 QPSEHDRLLVNFAPFVHPDDAERVRETFSAARELGRTEAHEVCFEITEQHQLRADLHVAC 180

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDT---RINKRKMEIEVMQLCSILEATSDGIAIIN 469
           +                     P   +    +    ++ +   +L S++ +  D I  ++
Sbjct: 181 IAIPQQSGPPIAQYLCAVVDQGPLLAERLALQQRNHQLFLSERRLESVINSALDAIICLD 240

Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
            +  I   N   + LF  P  D L  P   FL     ++    LT    L          
Sbjct: 241 SDQRITVFNPTAAALFLCPPHDALGSPLERFLPDAAQALSFAPLTTQAVLG-------EM 293

Query: 530 LGSTKEEKLLSLRIIIKKLPFSSCYSLTM--HDISEWKQEKNKLSHAKKIAEKE--SSHK 585
              T   + + + + +     S   + T+   D++  K+ + + +  +    +       
Sbjct: 294 TARTASGREIPVEVSVSFEHHSGGETTTVFARDLTSRKKAEAQRNELEDQLRESHKMQAL 353

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
                 ++H+    + AI+G  E+ K    G   N   IE    I+++G    D+V  +L
Sbjct: 354 GTMAGGIAHDFNNIVGAILGNVELAKADCGG---NAAAIESLQEIEKAGRRARDLVRQIL 410

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
             S+ E        +PV   E + +   L+++      + ++      +P +LAD   V+
Sbjct: 411 TFSRNE----PPQRKPVQAREVMGDTARLLRVTLPPA-VELQVHVPPQLPPMLADAMQVE 465

Query: 706 QIALNILSNAIHF-TPSGGQIII-------------STTHTSNEEVILRVRDTGVGMTNY 751
           Q   N+ +NA+H      G I +                      V L V+D G GM   
Sbjct: 466 QALFNLCTNAMHALGERRGLIQMDADLVRPDQRLCERLGLPPVSYVALSVQDNGPGMDAR 525

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
            L++  +PF          G+GTGLGLP+   ++  + G   ++S P +G+   + FP  
Sbjct: 526 TLQRIFEPFFTTKP----VGQGTGLGLPVVHGVMRNHGGAVDVYSIPGQGSRFTLYFPPA 581

Query: 812 DTSHPHD 818
           D   P +
Sbjct: 582 DALAPAE 588



 Score = 43.5 bits (101), Expect = 0.17,   Method: Composition-based stats.
 Identities = 23/301 (7%), Positives = 67/301 (22%), Gaps = 13/301 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D+   +   +              +G  L    +    D    +           G+ T
Sbjct: 239 LDSDQRITVFNPTAAALFLCPPHDALGSPL----ERFLPDAAQALSFAPLTTQAVLGEMT 294

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                G    +P++++    +    E +                  A    L+ +    H
Sbjct: 295 ARTASGR--EIPVEVSVSFEHHSGGETTTV----FARDLTSRKKAEAQRNELEDQLRESH 348

Query: 209 EIKKGHSSVEKEKYDIFSQQSP---PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
           +++   +      +D  +          L   +   +     + ++      +   L  +
Sbjct: 349 KMQALGTMAGGIAHDFNNIVGAILGNVELAKADCGGNAAAIESLQEIEKAGRRARDLVRQ 408

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
             +    E      +           L   +      L     P L     +   +    
Sbjct: 409 ILTFSRNEPPQRKPVQAREVMGDTARLLRVTLPPAVELQVHVPPQLPPMLADAMQVEQAL 468

Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
            + C                 + L+    +  + + +       L           + + 
Sbjct: 469 FNLCTNAMHALGERRGLIQMDADLVRPDQRLCERLGLPPVSYVALSVQDNGPGMDARTLQ 528

Query: 386 L 386
            
Sbjct: 529 R 529


>gi|260170318|ref|ZP_05756730.1| two-component system histidine kinase [Bacteroides sp. D2]
 gi|315918681|ref|ZP_07914921.1| two-component system histidine kinase [Bacteroides sp. D2]
 gi|313692556|gb|EFS29391.1| two-component system histidine kinase [Bacteroides sp. D2]
          Length = 499

 Score =  283 bits (725), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 97/498 (19%), Positives = 180/498 (36%), Gaps = 27/498 (5%)

Query: 323 PETVDKCPIPFFVYSH-GNLFYANP-SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
            E ++  P    ++   G +   N  +F  L  + SV+D+      + L       ++  
Sbjct: 11  DELLNILPDGVIIFDTNGEVIQLNQQAFAELHVHPSVNDMLPFP-TNRLFKLLNKKEDIL 69

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
              +   R      +        +        +        ++   N          V+ 
Sbjct: 70  STILEKIRQGENTYSLPEHTFMQEQVDYTQFPIRGEFATIRDRTNLNKILFFFRNITVEL 129

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED---ILRKPF 497
                        L + L+ T       +      + +    +  G P  +   +  + +
Sbjct: 130 TQEYI--------LNTALQKTKIYPWYYDISRSEFTLDDRYFEHLGIPAGENNTLTMEEY 181

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---- 553
              +  +    M       LS +              +            +   S     
Sbjct: 182 VNMIHPDDRQPMADAFVVQLSGNTTFDKTVPFRLRRGDGTWEWFEGQSTYIANISGHPYR 241

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
                  I E+K  +N L  A+K AE+    K  FLA +SHEIRTPL AI+GFS+VI + 
Sbjct: 242 LVGICLSIQEYKDIENTLIEARKKAEESDRLKMAFLANMSHEIRTPLNAIVGFSDVIGST 301

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
            +  L      ++   I  +   ++ +++D+LD+SKIES  +   F   SL+  + +   
Sbjct: 302 -YDELSEEERADFVRLISINSEHLVRLIDDILDLSKIESNTIKFTFSNCSLNSLMMDIEK 360

Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII--STTH 731
             Q       I I++   +    I  D+  +KQ+  N ++NA  FT  G  I    +  +
Sbjct: 361 E-QAMKPISGIEIKSLLPDEDVYINTDITRLKQVICNFINNARKFTQKG-YIYFGYTLDN 418

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
            +   V + V DTG G+    L +    F ++   +    +GTGLGL + K +V+   G 
Sbjct: 419 RNANSVQIFVEDTGSGIPQECLNEIFDRFYKVDTFK----QGTGLGLSICKTIVEHLQGD 474

Query: 792 FYIFSTPAKGTLIEIIFP 809
            ++ S   +G+   +  P
Sbjct: 475 IFVESKIGEGSCFTVTLP 492


>gi|86360139|ref|YP_472028.1| serine/threonine kinase protein [Rhizobium etli CFN 42]
 gi|86284241|gb|ABC93301.1| probable serine/threonine kinase protein with two-component sensor
            domain [Rhizobium etli CFN 42]
          Length = 1968

 Score =  283 bits (725), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 90/648 (13%), Positives = 222/648 (34%), Gaps = 42/648 (6%)

Query: 183  IVHVNRVDNDPRALGKRLDKK------FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM 236
            ++ +             L +              +     +  E       +S   ++  
Sbjct: 1338 VLRMAVEQAGAERGLLILSRGGEPRIAAEATIRGEAILIELRNEAITGVMPESVLNYVLR 1397

Query: 237  KNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS 296
              ++ SL    A                    LP       I                  
Sbjct: 1398 MREIVSLDNVSAENAFAADPYIRHRAARSILCLPLINHAKLIGALYLENTLAGRVFAPGR 1457

Query: 297  KESFEYLSHRNHPSLS-----AYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLL 350
                + ++ +   +L          E E      V+   I  F+    G +  AN +FL 
Sbjct: 1458 IPVLKLIASQAASTLEITGLYRDLAEREARIGRLVEANIIGIFIRDIGGRIIEANEAFLQ 1517

Query: 351  LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
            +  Y   + +     L   L  P+  + +A     L     +           + +  + 
Sbjct: 1518 MVGYSRDELLAGQL-LDKELTPPEWRERDAKAEAELR-VTGSVRPFEKVYQ--RKDGGHV 1573

Query: 411  LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470
              M      +A+             +  +++  + ++     +  + ++  +D   +   
Sbjct: 1574 PVM----IGEASFEGAGSQAVAFVLDLSESKRAEERLRASETRFRTFVDHATDAFFLHTD 1629

Query: 471  EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530
            +  ++  NR   +  GY  E+++      F        +   +  + +    Q +   TL
Sbjct: 1630 DLTVIDVNRQACESLGYSREELIGMHPRDFDGAIDEKSLATLVDRVDAG---QPMTFETL 1686

Query: 531  GSTKEEKLLSLRIIIKKLPFSSCYSL--TMHDISEWKQEKNKLSHAKKIAEKESSH--KS 586
               K+     + + + K      +       DI++ +Q ++ +  A+      S      
Sbjct: 1687 HRRKDGTTFPVEVRVGKFRQEEQWFRLSLARDITDRRQAEDAIQLARAELAHVSRLTTMG 1746

Query: 587  DFLARVSHEIRTPLTAIIGF-SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
            + +A ++HE+R PLT ++   +  ++     P            +        ++++ + 
Sbjct: 1747 ELVASIAHEVRQPLTGLVSSGNACLRYLDADPRDIVSARRAIERMISDAFRASEVIDRIR 1806

Query: 646  DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
             ++K    K     + +++++ VSE I+LV        + +RT+ ++ +P I+ D   ++
Sbjct: 1807 AMAK----KSPERRDRLNINDIVSETIALVSTDLERSAVSLRTNLSDGLPPIVGDQVQIQ 1862

Query: 706  QIALNILSN---AIHFTPSGGQ-IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761
            Q+ LN++ N   A+  TP G + +++ST   +   V++ VRD G  +   ++    + F 
Sbjct: 1863 QVILNLIMNANDAMAATPKGARELVVSTEKAAPNAVLVAVRDRGPILDLAKIGDIFEAFF 1922

Query: 762  QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
                      +G G+GL +++++++A+ G+ +       G + +   P
Sbjct: 1923 STKP------KGMGMGLTISRSIIEAHKGRLWAMPNAPHGAIFQFTLP 1964



 Score = 64.3 bits (155), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 25/326 (7%), Positives = 83/326 (25%), Gaps = 31/326 (9%)

Query: 90   DAHGYLKEISEELPKTIGNYAFKMIGMRLCD--VSDILHIDPNNHIGDLLK-RQNTWYGK 146
            D  G + E +E   + +G    +++  +L D  ++     + +      L+   +    +
Sbjct: 1503 DIGGRIIEANEAFLQMVGYSRDELLAGQLLDKELTPPEWRERDAKAEAELRVTGSVRPFE 1562

Query: 147  TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                  +G   +VP+      I   + E +G +    V             +  + +F  
Sbjct: 1563 KVYQRKDGG--HVPVM-----IGEASFEGAGSQAVAFVLDLSESKRAEERLRASETRFRT 1615

Query: 207  LHEIKKGHSSV--EKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK--DDVLKTEKYPLL 262
              +       +  +       ++Q+       + ++  +         D+         +
Sbjct: 1616 FVDHATDAFFLHTDDLTVIDVNRQACESLGYSREELIGMHPRDFDGAIDEKSLATLVDRV 1675

Query: 263  TSEES-------------SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
             + +              + P +         +   +        + +++ + +      
Sbjct: 1676 DAGQPMTFETLHRRKDGTTFPVEVRVGKFRQEEQWFRLSLARDITDRRQAEDAIQLA--- 1732

Query: 310  SLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
                          E V            G +   N + L        D +     +  +
Sbjct: 1733 RAELAHVSRLTTMGELVASIAHEVRQPLTGLVSSGN-ACLRYLDADPRDIVSARRAIERM 1791

Query: 370  LDAPKLSDNNAIKPVMLYRSDRTCIA 395
            +     +     +   + +       
Sbjct: 1792 ISDAFRASEVIDRIRAMAKKSPERRD 1817



 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/283 (13%), Positives = 84/283 (29%), Gaps = 13/283 (4%)

Query: 69   DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID 128
             SE  F       T  F  + D    + +++ +  +++G    ++IGM   D    +   
Sbjct: 1608 ASETRFRTFVDHATDAFFLHTD-DLTVIDVNRQACESLGYSREELIGMHPRDFDGAIDEK 1666

Query: 129  PNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNR 188
                + D +        +T     +GT   V + +          +F     +  + + R
Sbjct: 1667 SLATLVDRVDAGQPMTFETLHRRKDGTTFPVEVRV---------GKFRQEEQWFRLSLAR 1717

Query: 189  VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA 248
               D R     +    + L  + +  +  E         + P   L              
Sbjct: 1718 DITDRRQAEDAIQLARAELAHVSRLTTMGELVASIAHEVRQPLTGLVSSGNACLRYLDAD 1777

Query: 249  HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
             +D V        + S+     E  D       +  +++    + +   E+   +S    
Sbjct: 1778 PRDIVSARRAIERMISDAFRASEVIDRIRAMAKKSPERRDRLNINDIVSETIALVSTDLE 1837

Query: 309  PSLSAYFDEGENLTPETV-DKCPIPFFVYSHGNLFYANPSFLL 350
             S  +      +  P  V D+  I   + +   +  AN +   
Sbjct: 1838 RSAVSLRTNLSDGLPPIVGDQVQIQQVILNL--IMNANDAMAA 1878


>gi|51246243|ref|YP_066127.1| two-component system sensory/regulatory protein [Desulfotalea
           psychrophila LSv54]
 gi|50877280|emb|CAG37120.1| probable two-component system sensory/regulatory protein (Ntr
           family) [Desulfotalea psychrophila LSv54]
          Length = 963

 Score =  283 bits (725), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 92/600 (15%), Positives = 196/600 (32%), Gaps = 54/600 (9%)

Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302
           +T       +             + +L   ++   +        Q F   Q++ +   + 
Sbjct: 260 VTPIKRITAESTAITNGERPPGGKLTLSGGDELSELASAFSGMSQKFAHSQDSLEALLKE 319

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIE 361
            +            E    T   +D   +    +   G +   N     +      + I 
Sbjct: 320 RN--------EQLLELREQTQAYLDIAAVMLIAFDCSGVITMINAKGREILGLSLDEAIG 371

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
           +             S+       +L R D   IA      TI        ++ F      
Sbjct: 372 LN------WFEHFSSNEKKEFFQLLLRKD---IAVENHETTIVTRSGEMRSIDFYSILLR 422

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
           +       +     +  + +  +      + +   I E    G  +++  G +L  N+  
Sbjct: 423 DSSGAVRGRLCSGTDITEQKQAEMFFLNSIERFKDIFEQAPIGYQLLDDRGALLEVNQTW 482

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
               GY   ++L K F  FL            + + +       E   L       L+++
Sbjct: 483 LDYLGYKKGEVLGKFFIGFLSPAGQLCFEEKFSYVKATGGVLAAELEVLKKDGASVLMAI 542

Query: 542 RIIIKKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS--DFLARVSHEIR 597
              I      SC      +HD+S  ++ + + +  ++   +    ++       ++H+  
Sbjct: 543 DGRISSADNDSCKKIHCILHDVSHERKIEAEKAKLEEQLRQAQRMETVGAMAGGIAHDFN 602

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
             L  I+G +E+ +     P GNP      + + ++      ++  +L  S+ E     +
Sbjct: 603 NILAVILGNAEMAREDI--PAGNPAIAN-IDEVLKASERAKSLIKQILSFSRKE----KM 655

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
              PV     V EA+  ++       I I    + +   +L D   + Q+ +N++ NA+H
Sbjct: 656 RLVPVHPQLLVREALKFLRSTTPS-SISIVQDISPDCGVVLLDPVQLHQLVMNLVINAVH 714

Query: 718 FTPSGGQIIIS-------------------TTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
                G++++                          E V L V D+GVGM    +++   
Sbjct: 715 AIEDRGEVVVRMQGVHLNNADFDQLALTTPCARAEGEYVQLSVTDSGVGMGRERIKRIFD 774

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL-YDTSHPH 817
            F    ++    G+GTG+GL L   +V  + G   + S   +G+   +  P+  +   P 
Sbjct: 775 LFYTTKDA----GKGTGMGLALVHEIVKIHSGFISVESDLGRGSSFNVYLPVTAEEETPQ 830



 Score = 41.2 bits (95), Expect = 0.72,   Method: Composition-based stats.
 Identities = 18/142 (12%), Positives = 42/142 (29%), Gaps = 9/142 (6%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNT--WYGKT 147
           D  G +  I+ +  + +G    + IG+   +       +       LL R++      +T
Sbjct: 346 DCSGVITMINAKGREILGLSLDEAIGLNWFE---HFSSNEKKEFFQLLLRKDIAVENHET 402

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
           T+    G      ID  ++ +   +    G    G                   ++F  +
Sbjct: 403 TIVTRSGE--MRSIDFYSILLRDSSGAVRGRLCSGT--DITEQKQAEMFFLNSIERFKDI 458

Query: 208 HEIKKGHSSVEKEKYDIFSQQS 229
            E       +  ++  +     
Sbjct: 459 FEQAPIGYQLLDDRGALLEVNQ 480


>gi|49473936|ref|YP_031978.1| hypothetical protein BQ02870 [Bartonella quintana str. Toulouse]
 gi|49239439|emb|CAF25788.1| hypothetical protein BQ02870 [Bartonella quintana str. Toulouse]
          Length = 435

 Score =  283 bits (725), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 127/427 (29%), Positives = 209/427 (48%), Gaps = 32/427 (7%)

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
            R    +   E  +A   +  E A Q P     +G   E    +     +        S+
Sbjct: 28  FREIAERLRGELEVAGAHLVEETAVQLPCAQTLSGNIIEQAFIKEPAAVL--------SL 79

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
           L+  +DGI  +N +G I S +RAV  L GY + ++ R+P +      + S++  Y   I 
Sbjct: 80  LDTATDGILWLNEQGFIQSVSRAVLALTGYEINELRRQPLSSLFTLQSRSLIEKYFKLIT 139

Query: 518 SLDLRQTLEKITL--GSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575
                Q   +  +    TK  K +++ + I  L   + Y++ + D+++      K     
Sbjct: 140 MKGKNQVFTRGEIADLVTKSSKNITVSMTIVSLAQQNSYAVMLSDMTDVMLSLEKKVEEN 199

Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
           K+              V HE+RTPL A+IGF+E++++ RFG + N RY  Y   I  SG 
Sbjct: 200 KMV------------GVVHEMRTPLNALIGFAEIMRDGRFGSIENERYRGYLRDIISSGK 247

Query: 636 LVLDIVNDLLDISKIESG------KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
            +L +VN LL+ SK             +  E   +   +  +++ ++  AN   I++R  
Sbjct: 248 HILSLVNQLLECSKANHSGSKNQINTPIIAETFDVISCLRASMAFLETQANHNGIIMRII 307

Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749
              ++P I    +  +QI  N+LSNAI FTPSGGQII+  ++   E V + V D GVGM+
Sbjct: 308 APVHVPFICVSQQIFRQIIWNLLSNAIRFTPSGGQIIVHVSYGKKECVKISVSDNGVGMS 367

Query: 750 NYELEKAMKPFGQIPNSQQIRGE----GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           + E+  A++P+GQ+    +  G+    GTGLGLP+ KAMV+ + G+F +FS P  GT +E
Sbjct: 368 DEEIVHALQPYGQVERKDRHSGDSVFVGTGLGLPICKAMVEESGGQFLLFSKPNHGTTVE 427

Query: 806 IIFPLYD 812
           + FP++ 
Sbjct: 428 MFFPVFH 434


>gi|218782929|ref|YP_002434247.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218764313|gb|ACL06779.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 832

 Score =  283 bits (725), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 101/687 (14%), Positives = 221/687 (32%), Gaps = 77/687 (11%)

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIK---KGHSSVEKEKYDIFSQQSPPPHLRMKNKVS 241
            + R   D   L   +++    + +          V +   D+   +             
Sbjct: 31  RILRSQEDLEQLSAFIEELPIGILDFDLETNRVVGVNRALRDLSGYEVHEAASMEPKDFL 90

Query: 242 SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF- 300
           +         D++K      L+ E  S   +  F T +  +   +     +  N K    
Sbjct: 91  A-----PESMDLMKNRVARSLSGEHISEHSEYAFFTKSGKKLWCQLAQRLILKNGKPWRI 145

Query: 301 --EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSV 357
                       L     EGE      ++     F+    HGN+ + +P+   L  Y   
Sbjct: 146 LAVVQDITYRKRLEKARQEGEEKFRNILENTQDCFYQTDIHGNVIWTSPATAKLLDYALD 205

Query: 358 DDIE---------IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
           + +                 LL+  + S   +   V+L R D T +  S           
Sbjct: 206 EVMGKNVARTFYARPEDRERLLETMRSSGKVSDYEVLLQRKDGTTVWVSTNSQYYTDENG 265

Query: 409 NSLAM--TFIPFEKANQFPENMPQN--------------------GIEPEDVDTRINKRK 446
               +   F       +  + + +                      ++ E    R +++ 
Sbjct: 266 VIQGVEGVFRDISAQRRAEKQLREAHAQLEQRVAERTRDLEEINRDLKEEIARRRTSEKA 325

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
           +     +  +ILE   DG   ++ +G     N A++K+     +++    +    ++ T 
Sbjct: 326 LNHSENKYRTILENIEDGYYEVDLKGNFTFFNAAMAKILDCTPDELQDLNYRKLADKETV 385

Query: 507 SVMNHYLTEILSLDLR-QTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISE 563
             +    +++       ++ +   +       LL++ + + +        +   + DI+E
Sbjct: 386 GKVFKVFSKVFKTGKPFKSADYQLVKKDGTRSLLNISVSLIRDMDGGNMGFRGVVRDITE 445

Query: 564 WKQEKNKLSHAKKIAEKES--SHKSDFLARVSHEIRTPLTAIIGFSE-VIKNQRFGPLGN 620
               + +    +    +             V+H+    L  + G    ++          
Sbjct: 446 RNAAEEEKRDLELKLLQAQKMEAMGTLAGGVAHDFNNLLMGLQGNVSLILLELGKDHPTY 505

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
            R  +   +I  +      +   LL  ++              +++ +++ + +      
Sbjct: 506 ERLKKLEGFIKDAT----GLTRQLLGFAR----GGKYEVTTTDINQLINKTLEIFGRT-- 555

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL- 739
            K I I  +   ++  +  D   ++Q+ LN+  NA    P GG + +ST +   +E+ + 
Sbjct: 556 RKGIRISRAL-GDVWPVDVDQGQIEQVLLNLYVNAGQAMPKGGNLKVSTRNVHLDEIFVA 614

Query: 740 ------------RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
                        V DTG+GM     +K   PF    +     G GTGLGL  A  ++  
Sbjct: 615 PHGLKKGRFVKTSVTDTGIGMDLATQQKVFDPFFTTKD----IGRGTGLGLSSAYGIMKN 670

Query: 788 NMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           + G   +FS P KG+   I  P  ++S
Sbjct: 671 HGGVINVFSKPGKGSTFNIYLPASESS 697



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/409 (8%), Positives = 91/409 (22%), Gaps = 58/409 (14%)

Query: 94  YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID-PNNHIGDLLKRQNTWYGKTTLWPI 152
            +  ++  L    G    +   M   D      +D   N +   L         +     
Sbjct: 62  RVVGVNRALRDLSGYEVHEAASMEPKDFLAPESMDLMKNRVARSL-SGEHISEHSEYAFF 120

Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212
             +   +   LA   I    +    +R   +V             +  ++KF ++ E  +
Sbjct: 121 TKSGKKLWCQLAQRLIL---KNGKPWRILAVVQDITYRKRLEKARQEGEEKFRNILENTQ 177

Query: 213 GHSSVEKEKYDIFSQQSPPPHL-------RMKNKVSSLTEYYAHKDDVL----------- 254
                     ++         L        M   V+          + L           
Sbjct: 178 DCFYQTDIHGNVIWTSPATAKLLDYALDEVMGKNVARTFYARPEDRERLLETMRSSGKVS 237

Query: 255 ----------------KTEKYPLLTSEESSLPEQEDFHTINLNQYTK---KQYFGTLQNN 295
                            T               +  F  I+  +  +   ++    L+  
Sbjct: 238 DYEVLLQRKDGTTVWVSTNSQYYTDENGVIQGVEGVFRDISAQRRAEKQLREAHAQLEQR 297

Query: 296 SKESFEYL---------SHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYAN 345
             E    L               +     +  EN     ++     ++ V   GN  + N
Sbjct: 298 VAERTRDLEEINRDLKEEIARRRTSEKALNHSENKYRTILENIEDGYYEVDLKGNFTFFN 357

Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405
            +   +      +                  +       +  +  +T     +  + +  
Sbjct: 358 AAMAKILDCTPDEL------QDLNYRKLADKETVGKVFKVFSKVFKTGKPFKSADYQLVK 411

Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
                  +        +    NM   G+  +  +    + +     ++L
Sbjct: 412 KDGTRSLLNISVSLIRDMDGGNMGFRGVVRDITERNAAEEEKRDLELKL 460



 Score = 54.6 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/147 (10%), Positives = 44/147 (29%), Gaps = 11/147 (7%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN--HIGDLLKRQNTWY 144
           +  D HG +   S    K +     +++G     V+   +  P +   + + ++      
Sbjct: 181 YQTDIHGNVIWTSPATAKLLDYALDEVMGKN---VARTFYARPEDRERLLETMRSSGKVS 237

Query: 145 GKTTLW-PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL-DK 202
               L    +GT   V +   +      N    G  G  +              +    +
Sbjct: 238 DYEVLLQRKDGTT--VWVSTNSQYYTDENGVIQGVEG--VFRDISAQRRAEKQLREAHAQ 293

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQS 229
               + E  +    + ++  +  +++ 
Sbjct: 294 LEQRVAERTRDLEEINRDLKEEIARRR 320



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/140 (12%), Positives = 44/140 (31%), Gaps = 6/140 (4%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYG 145
           + +D  G     +  + K +     ++  +    ++D   +         + K    +  
Sbjct: 345 YEVDLKGNFTFFNAAMAKILDCTPDELQDLNYRKLADKETVGKVFKVFSKVFKTGKPFKS 404

Query: 146 KTTLW-PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
                   +GT     ++++   I   +    GFRG  +V      N      + L+ K 
Sbjct: 405 ADYQLVKKDGT--RSLLNISVSLIRDMDGGNMGFRG--VVRDITERNAAEEEKRDLELKL 460

Query: 205 SHLHEIKKGHSSVEKEKYDI 224
               +++   +      +D 
Sbjct: 461 LQAQKMEAMGTLAGGVAHDF 480


>gi|254292570|ref|YP_003058593.1| histidine kinase [Hirschia baltica ATCC 49814]
 gi|254041101|gb|ACT57896.1| histidine kinase [Hirschia baltica ATCC 49814]
          Length = 814

 Score =  283 bits (725), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 116/743 (15%), Positives = 252/743 (33%), Gaps = 58/743 (7%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDV---SDILHIDPNNHIGDLLKRQNTWYGK 146
           D    L E   +L    G      +  RL  +        +      G  L+        
Sbjct: 101 DPAVRLLEGLGDLEARDGAGRDATLRERLMQLRTEGAPFSLTIIGPNGRFLEADG----- 155

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                  G    + +  + +     +    G RG           + R +  R    F  
Sbjct: 156 ----RTAGGRAVLWVSDSTIKGLEES----GARG--------RLEEARQIIARDPTAFLE 199

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
           +       +        +               +  + +     D  + ++   +LT + 
Sbjct: 200 MLGKAPFIAWRLSGAGRLQWVNESYLKAVEGKNLDHVLDRQIMLDQEIASQAQTVLTDKT 259

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
            S      +  I+  +   +     L      +          +     +       +T+
Sbjct: 260 ESRKT--RYIVIDGERRAMRVLMFPLSG--GVAGMAFDVSEEEAARETLERHRRAHDDTL 315

Query: 327 DKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGG---LSTLLDAPKLSDNNAIK 382
           +       ++     L + N  F  L        +E       L  L ++  L       
Sbjct: 316 NHVSDAVAIFGADRKLSFHNKHFEELWDLNPRFLLEKPSHGEFLDRLRESKLLPAQQKYS 375

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP-EDVDTR 441
                  D           + +   EN   +      +  +    +    +   +  D  
Sbjct: 376 DWRTKELD------YNTGGSKRSIDENMWMLPDGRTLQVTRQKHPLGGILLLFKDISDEL 429

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
             K      + Q  + L+  S+ +A+   +G +  +N +  KL+      +   P    +
Sbjct: 430 TLKANYNALINQQKATLDKLSEAVAVYGGDGGLRLSNASFEKLWQLEPAKLKNAPEFDEV 489

Query: 502 EQNTPSVMNH-YLTEILSLDL-----RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555
            +    + +   +   +   +         E        +  +++               
Sbjct: 490 AEMCAPLFHDKSVWAAIKGRVTNPTPEARQEFRGEMKRSDGSIVTFLTQPLP---DGATL 546

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
           +   D +  ++ +  L    +  +     K++F+  VS+++R+PLT I+G++E +++ + 
Sbjct: 547 IAFVDATASRRVEGALRERAEAFQAADRLKTEFVQNVSYQLRSPLTTILGYAEFLESGKQ 606

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
           G L N + +E  N I ++ + +  ++ ++LD++ IE+G+M+L  + + L   + E++ +V
Sbjct: 607 GSL-NAQQLENVNSILQASDHLSRLIENILDLATIEAGRMDLDLKDLDLKSLIDESVEMV 665

Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
              A + ++ I+      I  + AD R +KQI  N+L+NA+ FT +G  I +        
Sbjct: 666 VANAADTKVSIKVDCPATIGSMHADERRIKQILFNLLTNALRFTTAGDTIKVKAEKAE-G 724

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            + L+V DTG G+   +  +A   F    N       G GLGL L ++ V+ + G   + 
Sbjct: 725 VIRLQVTDTGKGVAYEQQAEAFDAFTSGDN------RGAGLGLALVRSFVELHGGWVAMK 778

Query: 796 STPAKGTLIEIIFPLYDTSHPHD 818
           S P KG  +    P  + + P D
Sbjct: 779 SKPTKGATVICCLP--EFASPKD 799


>gi|261403959|ref|YP_003240200.1| multi-sensor signal transduction histidine kinase [Paenibacillus
           sp. Y412MC10]
 gi|261280422|gb|ACX62393.1| multi-sensor signal transduction histidine kinase [Paenibacillus
           sp. Y412MC10]
          Length = 764

 Score =  283 bits (725), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 74/406 (18%), Positives = 162/406 (39%), Gaps = 28/406 (6%)

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
           +  L ++            N     +       +    + +     L S++  T+D I  
Sbjct: 374 DRRLEVSSRDELGQLAGRINAMTRNLGTYTSQLKQMVDENQSVKEYLESVINQTADAIHT 433

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
            +    ++S N+A  +L+G+   +++ +     +           +  + + +    +  
Sbjct: 434 TDTYERVISVNKAFEQLYGWKAHEVVGRKLA-LVPPAKEEEEKERIRRLRAGERLPPV-- 490

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
            T+   K+   + + I    +   +           D++E  + +  L  ++K+      
Sbjct: 491 ETVRLRKDGSTIEVSISTSLVRDENGEVTSMISVSRDVTERNRIEELLRRSEKLNTV--- 547

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
                 A V+HEIR PLT + GF + ++ Q      +     + + +    + +  IV++
Sbjct: 548 --GQLAAGVAHEIRNPLTTLRGFLQ-LQQQTHKANPD-----HIDLMLSELDRINLIVSE 599

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703
            L ++K ++    ++F+   +   + + IS +   A+   I  +  F      +  +   
Sbjct: 600 FLILAKPQA----INFQERDVGVIMGDVISFLDSQAHLYGIEFKLDFIEEPTFVHCEENQ 655

Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
           +KQ+ +N+L NAI   P GG I I  T    E++ + +RD G G+    +    +PF   
Sbjct: 656 LKQVFINLLKNAIEAMPEGGNIWIRLTRPQPEQIQIDIRDEGQGIPEDMMPHLGEPF--- 712

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
                 +  GTGLGL +++ ++  + G   I S    GT + I+ P
Sbjct: 713 ---ITNKETGTGLGLMVSQRIIQGHRGTMEIESEVGVGTRVSIVLP 755



 Score = 62.7 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/117 (15%), Positives = 41/117 (35%), Gaps = 4/117 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            D +  +  +++   +  G  A +++G +L  V      +    I  L   +     +T 
Sbjct: 434 TDTYERVISVNKAFEQLYGWKAHEVVGRKLALVPPAKEEEEKERIRRLRAGERLPPVETV 493

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
               +G+ + V I  +   +   N E +      +       N    L +R +K  +
Sbjct: 494 RLRKDGSTIEVSISTSL--VRDENGEVTSM--ISVSRDVTERNRIEELLRRSEKLNT 546


>gi|301069192|dbj|BAJ11975.1| histidine kinase ExpS [Pectobacterium carotovorum subsp.
           carotovorum]
          Length = 933

 Score =  283 bits (725), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 94/345 (27%), Positives = 154/345 (44%), Gaps = 19/345 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +F Y +   +  P    +       ++      L   +   +             +++ +
Sbjct: 193 IFAYRLMRDVTTPIRNMV-----DTVDRIRRGQLDSRVEGYMLGELDMLKNGINSMAMSL 247

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                          +D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 248 TAYHEEMQQNIDQATYDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTP 307

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+     Q      N    +Y   I+RS N +L+I+ND+LD SK+E+GK+ L  
Sbjct: 308 LNGVIGFT----RQTLKTPLNTTQTDYLLTIERSANNLLNIINDVLDFSKLEAGKLVLED 363

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P SL   + + + L+   A+EK + +  S  N++P   + D   ++QI  N+L NAI F
Sbjct: 364 IPFSLHNTLDDVVMLLAHTAHEKGLELTLSIQNDVPEQFVGDPLRIQQIITNLLGNAIKF 423

Query: 719 TPSGGQ-IIISTTHTSNEEVILRV--RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T  G   I +         V L V  RDTG+G+   +  +  + F Q   S   R  GTG
Sbjct: 424 TEQGNIDIRVEKRRQELHHVQLEVQIRDTGIGIAELQQSQLFQAFRQADTSISRRHGGTG 483

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTL--IEIIFPLYDTSHPHD 818
           LGL + + +V    G     S  +KG+     I  PL   + P +
Sbjct: 484 LGLVITQRLVKEMGGDISFQSELSKGSTFWFHITLPLNPHAIPTE 528


>gi|264678304|ref|YP_003278211.1| PAS/PAC sensor hybrid histidine kinase [Comamonas testosteroni
           CNB-2]
 gi|262208817|gb|ACY32915.1| PAS/PAC sensor hybrid histidine kinase [Comamonas testosteroni
           CNB-2]
          Length = 716

 Score =  283 bits (725), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 99/596 (16%), Positives = 199/596 (33%), Gaps = 70/596 (11%)

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
                L  + +  +PE ED     + +    Q+   LQN      + ++           
Sbjct: 19  AAPLGLSANTQPLVPEDEDPLQALVAELRNYQHELELQNEVLNYSQAVAESASER----- 73

Query: 316 DEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIE-------IAGGLS 367
                         P+P  V      +  AN       +    D +              
Sbjct: 74  ------FETLFASIPLPLLVVDEYDMVVQANAMAHRAFQPTEKDRLLINFKPFVHVNDTE 127

Query: 368 TL---LDAPKLSDNNAIKPVMLYRSDRTCIAASARLH--TIQWNRENSLAMTFIPFEKAN 422
            +    +  K      +  V+   ++   +     +    +      +            
Sbjct: 128 RVTTAFEQAKAMGRAEVHEVLFQITEEFELCGDLHVAGVVVPQQNGPATWQYLCAVVNQG 187

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
                     +  E    +   +++     +L S++ +  D I  +++   I   N   +
Sbjct: 188 P---------LLAERKALQERNQQLYASERRLESVINSALDAIICVDQHQRITVFNPTAA 238

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
            LF    +D L  P   FL     ++    LT    L           G T   + + + 
Sbjct: 239 ALFLCSPQDALGSPLERFLPDAARALAFSSLTTQAVLG-------EMTGLTLSGREIPME 291

Query: 543 IIIKKLPFSSCYSLTM--HDISEWKQEKNKLSHAKKIAEKE--SSHKSDFLARVSHEIRT 598
           I +     SS  + T+   D++   + + + +  +    +             ++H+   
Sbjct: 292 ISVSFEHHSSGDTTTIFARDLTSRNRAEAQRNALETQLRESHKMQAVGTMAGGIAHDFNN 351

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
            + AI+G  E+ K    G   NP  +E    I+++G    D+V  +L  S+ +       
Sbjct: 352 IVGAILGNVELAKADSCG---NPAAMESLREIEKAGRRARDLVRQILTFSRND----LPE 404

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718
             PV + E +S+   L+++      I ++   +N++P +LAD   V+Q   N+ +NA+  
Sbjct: 405 RRPVQVQEVMSDTARLLRVTLPP-SIELQVQESNDLPPLLADPTQVEQALFNLCNNAMQA 463

Query: 719 TPSGGQII--------------ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764
             S   II                      E ++  V+D+G GM      +  +PF    
Sbjct: 464 IGSQRGIIQMRAMRIAPDSYQCERLGLAVAEYLVFMVQDSGPGMDVATQRRIFEPFFTTK 523

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820
                 G+GTGLGL +   ++  + G   + S   +G+   + FPL D +  H  +
Sbjct: 524 P----VGQGTGLGLSVVHGVMRTHGGAVDVHSELGQGSCFTLYFPLSDPTSSHSAL 575



 Score = 37.7 bits (86), Expect = 8.1,   Method: Composition-based stats.
 Identities = 24/237 (10%), Positives = 58/237 (24%), Gaps = 13/237 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D H  +   +              +G  L         D    +           G+ T
Sbjct: 224 VDQHQRITVFNPTAAALFLCSPQDALGSPLE----RFLPDAARALAFSSLTTQAVLGEMT 279

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
              + G    +P++++    +  + + +              N   A    L+ +    H
Sbjct: 280 GLTLSGR--EIPMEISVSFEHHSSGDTTTI----FARDLTSRNRAEAQRNALETQLRESH 333

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           +++   +      +D  +            K  S     A +      +           
Sbjct: 334 KMQAVGTMAGGIAHDFNNIVGAILGNVELAKADSCGNPAAMESLREIEKAGRRARDLVRQ 393

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
           +     F   +L +    Q    + + ++     L       +    D    L   T
Sbjct: 394 I---LTFSRNDLPERRPVQVQEVMSDTARLLRVTLPPSIELQVQESNDLPPLLADPT 447


>gi|265764347|ref|ZP_06092915.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
 gi|263256955|gb|EEZ28301.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
          Length = 1039

 Score =  283 bits (725), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 95/524 (18%), Positives = 187/524 (35%), Gaps = 64/524 (12%)

Query: 317 EGENLTPETVDKCPIPFF----------VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
           E        +D  P+ +           V         NP F     ++  D +      
Sbjct: 402 EAMANYKNLIDNMPLLYMQEKLIVNKQGVADDLIYLNVNPHFEKHF-FRREDVVGKR--A 458

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
           S L           +  + +   +   I        I                      +
Sbjct: 459 SELFPESL---PEFLHFIQISLKENRAITFPYYFKKIDR----------FYDIVLKGAHQ 505

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI----------AIINREGIILS 476
               +    +  +    ++K+     +L   LE  +D I           + +    I  
Sbjct: 506 ENVIDIFCVDSTELHRAQQKLNATNHKLSMALE-VADIIPWKWDLLSKTILCDINKPIEL 564

Query: 477 T---NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLG 531
           +   N    +    P      K     + +     +     +++   L +  E  ++   
Sbjct: 565 SAQGNNISEEQLAVPDSQYFSK-----IYKEDRIRVEQAYKDLIEGRLEKVKEEYRVINI 619

Query: 532 STKEEKLLSLRI-IIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
                K+  +      +    +        +   I+  K+ + +L+ AK  AE+ +  KS
Sbjct: 620 RNHTHKIEWVEAQAAVETRDENGTPVTLVGSSQVITGRKKMEMELTSAKDRAEESNRLKS 679

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
            FLA +SHEIRTPL AI+GFS ++ +            EY + I+ +  L+L +++D+LD
Sbjct: 680 AFLANMSHEIRTPLNAIVGFSGILASTEEEEEK----QEYVSIIENNNALLLQLISDILD 735

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706
           +SKIE+G +   +  + L+  + +  S ++L      + +       +  +  +   + Q
Sbjct: 736 LSKIEAGTLEFQYSDIELNTELKKLESTLKLKLKSDDVQLEFVPGLPVCPVCTEKNRLSQ 795

Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSNE-EVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           + +N+++NAI FT  G    I   +     E+   V DTG G+   + E     F ++ +
Sbjct: 796 LIINLVTNAIKFTSRGS---IRFGYEHRGKELYFYVTDTGCGIPKDKQESIFGRFVKLNS 852

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
                 +GTGLGL + + +V+   G   + S   KG+      P
Sbjct: 853 F----AQGTGLGLSICRTLVEHMGGHIGVDSEEGKGSTFWFSLP 892


>gi|218779994|ref|YP_002431312.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218761378|gb|ACL03844.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 656

 Score =  283 bits (725), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 80/535 (14%), Positives = 185/535 (34%), Gaps = 47/535 (8%)

Query: 314 YFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                ++     +D      + V   GN  +++PS   +        I     LS ++  
Sbjct: 10  ESALAKDRFDSLLDITGDWMWEVCPEGNCIFSSPSVRFMIGRPPEALIGEN--LSRIITP 67

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
               D  A+    + R   +          +       + +        ++        G
Sbjct: 68  Q---DGEALLEPCIRRVLDSGEPFRDVEIPVLRKDGGEVILAVSGLPILDEDGRITGVRG 124

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
           +          ++ +     +  + +E+   G+ I +  G I+  N  ++++ GY     
Sbjct: 125 VSRNLTHQHWAEQALRKSEERYRNFIESAPIGMMISDTNGCIIYANEKMAEITGYERSAW 184

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
             + +   +  +   V+    T  ++  L              ++++ LR+I   +  S 
Sbjct: 185 QGRSYIDMVHPDDYGVILENRTRAIAT-LEPVDPYEIRIFNAAKEVVWLRLIPHSMYESD 243

Query: 553 --------CYSLTMHDISEWKQEKNKLSHAKKIAEK--ESSHKSDFLARVSHEIRTPLTA 602
                    +   + D++  K  + +    ++   +  +          V+H+    L  
Sbjct: 244 EYGNKSVAYFQNFIEDVTASKIAREEKIRLEQQLSQTHKMEALGALAGGVAHDFNNILYP 303

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           IIG+ E+  ++      NP        +  +      +V+ +L  S+ +  K+     P+
Sbjct: 304 IIGYVEMTLSEVG---DNPFAQGNLKEVLSAAERAQKLVDQILAFSRRKKEKLL----PM 356

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP-S 721
            +   V +A+SL++       + + T    +   +LAD   + Q+ +N+ +NA       
Sbjct: 357 RIQPVVKDALSLIRSSLP-HNVQLHTDINEDGGVVLADQTQIHQVVMNLCTNAYQSMRGR 415

Query: 722 GGQIIIS--------------TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
           GG + +S              T     + V L + D+G GM +   ++  +P+       
Sbjct: 416 GGVLGVSLKQCSIGWEDLNLHTRLKPGDYVRLCISDSGGGMDDAVKDRIFEPYFTTKGP- 474

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY---DTSHPHDC 819
               +G+G+GL +   +V    G   + S   KG++  I+ P+      S P   
Sbjct: 475 ---EKGSGMGLAVVHGIVAKYNGAITVESELGKGSVFTILLPVAAKNPGSAPESA 526



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/335 (9%), Positives = 91/335 (27%), Gaps = 27/335 (8%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP--NNHIGDLLKRQNTW 143
            W +   G     S  +   IG     +IG  L  +      +      I  +L     +
Sbjct: 29  MWEVCPEGNCIFSSPSVRFMIGRPPEALIGENLSRIITPQDGEALLEPCIRRVLDSGEPF 88

Query: 144 YGKTT-LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
                 +   +G    V + ++ LPI   +   +G RG  +       +      ++ ++
Sbjct: 89  RDVEIPVLRKDGG--EVILAVSGLPILDEDGRITGVRG--VSRNLTHQHWAEQALRKSEE 144

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS-----LTEYYAHKDDVLKTE 257
           ++ +  E       +      I         +    + +      +   +     V+   
Sbjct: 145 RYRNFIESAPIGMMISDTNGCIIYANEKMAEITGYERSAWQGRSYIDMVHPDDYGVILEN 204

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS------------- 304
           +   + + E   P +             +    ++  + +   + ++             
Sbjct: 205 RTRAIATLEPVDPYEIRIFNAAKEVVWLRLIPHSMYESDEYGNKSVAYFQNFIEDVTASK 264

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364
                 +       +    E +         +   N+ Y    ++ +T  +  D+    G
Sbjct: 265 IAREEKIRLEQQLSQTHKMEALGALAGGVA-HDFNNILYPIIGYVEMTLSEVGDNPFAQG 323

Query: 365 GLSTLLDAPKLSDNNAIKPVML-YRSDRTCIAASA 398
            L  +L A + +     + +    R     +    
Sbjct: 324 NLKEVLSAAERAQKLVDQILAFSRRKKEKLLPMRI 358


>gi|260426759|ref|ZP_05780738.1| phosphate regulon sensor protein PhoR [Citreicella sp. SE45]
 gi|260421251|gb|EEX14502.1| phosphate regulon sensor protein PhoR [Citreicella sp. SE45]
          Length = 346

 Score =  283 bits (725), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 78/362 (21%), Positives = 145/362 (40%), Gaps = 31/362 (8%)

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
             I+ A      +I  +  I + N     L G   E I  + F   L       +   + 
Sbjct: 6   RDIVAAVPLPSVLIRWDERIAAANSEAQALLG---EGIEGRHFITALR---QPTLLDAIE 59

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA 574
                   + L +      +++    +      L       LT  D++  +Q        
Sbjct: 60  GTFRDGAPR-LTRYLTSDDRQDTTFEVSCRAVPLGNGPGVLLTFQDVTHLEQV------- 111

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN-QRFGPLGNPRYIEYANYIDRS 633
                     + DF+A VSHE+RTPLTA++GF E +K   R   L   R   +   ++  
Sbjct: 112 -------GQMRRDFVANVSHELRTPLTALLGFIETLKGPAREDALARDR---FLGIMEAE 161

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693
              +  +V DLL +S++E+ +     EPV L   V   +S +   A E  + +       
Sbjct: 162 AGRMERLVGDLLSLSRVEADERVRPTEPVDLPSMVRSVLSGLAPLAEEAGVELAFELPEG 221

Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT------HTSNEEVILRVRDTGVG 747
              +  D   ++Q+ +N++ N + ++  G ++ +S +          + V++ V DTG G
Sbjct: 222 ALEVPGDPDQLRQVVVNLVENGVKYSGRGAEVKVSVSGPEYHSRLRGDAVVITVSDTGPG 281

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
                + +  + F ++ N +     GTGLGL + K +++ + G+  I S P  G    ++
Sbjct: 282 FDPLHIPRLTERFYRVDNHRSREMGGTGLGLAIVKHIINRHRGRLRIESRPGAGAQFRVV 341

Query: 808 FP 809
            P
Sbjct: 342 LP 343


>gi|160943810|ref|ZP_02091041.1| hypothetical protein FAEPRAM212_01308 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444984|gb|EDP21987.1| hypothetical protein FAEPRAM212_01308 [Faecalibacterium prausnitzii
           M21/2]
          Length = 648

 Score =  283 bits (725), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 78/257 (30%), Positives = 130/257 (50%), Gaps = 11/257 (4%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           + +++  KL  A +     +  K +FL  +SH+IRTP+ AIIGF+  +           +
Sbjct: 117 QLEEQNRKLELAVRHEAAANRAKREFLFNMSHDIRTPMNAIIGFT-SLAATHVD--NKEQ 173

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
            ++Y   I  S   +L ++ND+LD+S+IESGK+ +  + V L + V +  S++Q   + K
Sbjct: 174 VLDYLKKISTSSQHLLSLINDVLDMSRIESGKVKIEEKAVHLPDLVHDIRSIIQPNISSK 233

Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN-----EE 736
           R+ +     + +   I+ D   + Q+ LNILSNAI FTP+GG + I              
Sbjct: 234 RLSLFIDTMDVVDEDIITDPLRLNQVLLNILSNAIKFTPTGGMVSIRIAQKPGAPKGCGN 293

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
              R++D G+G+     +   + F +  +S     +GTGLGL + K +VD   G   + S
Sbjct: 294 YEFRIKDNGIGINKEFQKHIFEEFTREESSTVSGIQGTGLGLSITKNIVDLMGGTITLES 353

Query: 797 TPAKGTLIEI--IFPLY 811
            P KG+   +   FPL 
Sbjct: 354 EPGKGSEFIVNLCFPLS 370


>gi|45440820|ref|NP_992359.1| Signal transduction histidine kinase [Yersinia pestis biovar
           Microtus str. 91001]
 gi|229894056|ref|ZP_04509242.1| Sensor protein of zinc sigma-54-dependenttwo-component system
           [Yersinia pestis Pestoides A]
 gi|229903423|ref|ZP_04518536.1| Sensor protein of zinc sigma-54-dependenttwo-component system
           [Yersinia pestis Nepal516]
 gi|45435678|gb|AAS61236.1| Signal transduction histidine kinase [Yersinia pestis biovar
           Microtus str. 91001]
 gi|229679193|gb|EEO75296.1| Sensor protein of zinc sigma-54-dependenttwo-component system
           [Yersinia pestis Nepal516]
 gi|229703941|gb|EEO90954.1| Sensor protein of zinc sigma-54-dependenttwo-component system
           [Yersinia pestis Pestoides A]
 gi|320014313|gb|ADV97884.1| Sensor protein of zinc sigma-54-dependenttwo-component system
           [Yersinia pestis biovar Medievalis str. Harbin 35]
          Length = 607

 Score =  283 bits (725), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 82/376 (21%), Positives = 162/376 (43%), Gaps = 28/376 (7%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           ++++R+++        I+     G+   N E +I   N    K+FG   + +  +     
Sbjct: 237 QLSRRQLQDSKAISTEIINNLPIGLITTNEEQLISVVNHTAEKIFGISKDILTGQNIHQA 296

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL---- 556
           L      ++        S   +  +E       KE  ++ L I +  +   +   L    
Sbjct: 297 LPPEWNLLVK------KSQRHQPVIEHEIDYKLKEGLIIPLSISVANIVNHNGSFLGNIF 350

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
              D+ E +Q + ++   +K+         +  A V+HEIR PL++I GF++    +   
Sbjct: 351 IFRDMREVRQLQEEIRRKEKLV-----AIGNLAAGVAHEIRNPLSSIKGFAKYF--EGHS 403

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
           P G+    E A  + +  + +   V +LL + +      +L  + V+++E ++ ++ L++
Sbjct: 404 PQGSEEQ-ELAKVMIKEVDRLNRAVTELLGLVRPS----DLRIQLVNINEIIAHSLHLIR 458

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
             A+ K+I I+     N+PR+  D     Q  LN+  NAI      G + I+       +
Sbjct: 459 QDADSKKITIQFISNENLPRVEIDPDRFTQALLNLYLNAIQAMGRAGTLEIALALVEESK 518

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           + + V DTG G+   +LE    P+     S      GTGLGL + + +++ + G+  + S
Sbjct: 519 LRISVIDTGKGIRAEDLENIFNPYFTTKAS------GTGLGLAIVQKVIEEHQGRITVTS 572

Query: 797 TPAKGTLIEIIFPLYD 812
            P  GT  ++  PL  
Sbjct: 573 HPQSGTRFDMTIPLVQ 588



 Score = 37.7 bits (86), Expect = 9.2,   Method: Composition-based stats.
 Identities = 31/257 (12%), Positives = 61/257 (23%), Gaps = 11/257 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            +    +  ++    K  G     + G  +            N +    +R         
Sbjct: 264 TNEEQLISVVNHTAEKIFGISKDILTGQNIHQALPPEW----NLLVKKSQRHQPVIEHEI 319

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK-FSHL 207
            + ++   L +P+ ++   I + N  F G     I    R     +   +R +K      
Sbjct: 320 DYKLK-EGLIIPLSISVANIVNHNGSFLG--NIFIFRDMREVRQLQEEIRRKEKLVAIGN 376

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
                 H             +    H    ++   L +    + D L      LL     
Sbjct: 377 LAAGVAHEIRNPLSSIKGFAKYFEGHSPQGSEEQELAKVMIKEVDRLNRAVTELL---GL 433

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
             P       +N+N+          Q+   +        N        D           
Sbjct: 434 VRPSDLRIQLVNINEIIAHSLHLIRQDADSKKITIQFISNENLPRVEIDPDRFTQALLNL 493

Query: 328 KCPIPFFVYSHGNLFYA 344
                  +   G L  A
Sbjct: 494 YLNAIQAMGRAGTLEIA 510


>gi|254444627|ref|ZP_05058103.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198258935|gb|EDY83243.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 561

 Score =  283 bits (725), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 85/244 (34%), Positives = 137/244 (56%), Gaps = 4/244 (1%)

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + + +L  AK++AE+ +++KS+FLA +SHE+R+PL  +IGFS+ +  Q        R  E
Sbjct: 176 RYREELISAKEMAERTNAYKSEFLANMSHELRSPLNCVIGFSD-LIEQDVEEKCFERIGE 234

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           YA  I  +G  +L ++ ++LD+++I++GKM L    V LDE +    S+++L A EKR+ 
Sbjct: 235 YAGLIKAAGKHLLGMITEILDLARIDTGKMRLEKREVHLDELLELIASMLKLPAREKRLS 294

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           I         R  AD R + Q+  N+LSNAI F+  G +I +S      E V + V D G
Sbjct: 295 IELDCDP--IRFEADERRLHQVLHNLLSNAIKFSSEGSRIGVS-AQGQGEIVEIVVWDEG 351

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
            G+    L++  +PF Q+ +     GEG GLGL + K +VD + G+  + S    G+   
Sbjct: 352 RGIAPDWLDRIFEPFEQVESGDSELGEGAGLGLAIVKRIVDLHGGQVSVESELGVGSRFS 411

Query: 806 IIFP 809
           +  P
Sbjct: 412 VRLP 415


>gi|90425527|ref|YP_533897.1| PAS/PAC sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris BisB18]
 gi|90107541|gb|ABD89578.1| PAS/PAC sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris BisB18]
          Length = 513

 Score =  283 bits (725), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 79/529 (14%), Positives = 189/529 (35%), Gaps = 31/529 (5%)

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIA 363
             +    S             +++  I  + +         + +   L  +         
Sbjct: 1   MTDRKQPSLDERSRSERLQFGIEESGIGVWELNLATRQLSWSKTARDLFGFS-----GDK 55

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR-ENSLAMTFIPFEKAN 422
                +  +    ++ A   + L +S  +           +         +         
Sbjct: 56  PISYDIFLSLLTPEDRARTVLALKQSVDSGDNFDVEYRIERRPGSGTCHWVRARGGVVKA 115

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
           +        GI  +  D +  +  +  +  QL SIL+   D + +I+  GI+   + A  
Sbjct: 116 EDGTPRHLCGIILDIDDQKQLEEALRTQQSQLRSILDTVPDAMIVIDGHGIMRFFSSAAE 175

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT--LEKITLGSTKEEKLLS 540
           +LFGY   + + +  +  +     +  +++L    +   R    + +I  G  ++     
Sbjct: 176 RLFGYSEGEAIGRNVSELMAGPDRARHDNHLDRYRASGERHIIGIGRIVTGRRRDGTTFP 235

Query: 541 LRIIIK--KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS--HKSDFLARVSHEI 596
           + + I   +      ++  + D++E++Q + +L   +      S      +  + ++HE+
Sbjct: 236 IHLTIGEMRSGGEPHFTGFIRDLTEYQQTQARLHELQSELVHVSRLSAMGEMASALAHEL 295

Query: 597 RTPLTAIIGF---SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI-SKIES 652
             PL+AI  +   S  + +    P   P+     +           I+  L D  S+ ES
Sbjct: 296 NQPLSAISNYMKGSRRLLSGSNDP-NRPKIEAAMDRAAEQALRAGQIIRRLRDFVSRGES 354

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712
                     SL + + EA +L    A E+ +L+R +       +L D   ++Q+ +N+ 
Sbjct: 355 -----EKRVESLAKLIEEAGALGLTGAREQGVLLRFNLDRQSDMVLVDRVQIQQVLVNLF 409

Query: 713 SNAIHFT--PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
            NA+         +++++    ++  + + V DTG G  +       + F     +    
Sbjct: 410 RNAVEAMAHSDKRELVVANNRVADHMIEVAVSDTGSGFHDDVKSNLFQTFFTTKET---- 465

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819
             G G+GL +++++++A+ G+ +  +  A G       P   +    D 
Sbjct: 466 --GMGVGLSISRSIIEAHGGRMWAETNSAGGATFRFTLPAAASEDLADA 512



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 31/412 (7%), Positives = 91/412 (22%), Gaps = 18/412 (4%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMI--GMRLCDVSDILHIDPNNHIGDLLKRQNTW 143
            W ++        S+      G    K I   + L  ++          +   +   + +
Sbjct: 29  VWELNLATRQLSWSKTARDLFGFSGDKPISYDIFLSLLTPEDRARTVLALKQSVDSGDNF 88

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +  +    G+     +      + + +         GI+             +    +
Sbjct: 89  DVEYRIERRPGSGTCHWVRARGGVVKAEDGTPRHL--CGIILDIDDQKQLEEALRTQQSQ 146

Query: 204 FSHLHEIKKGHSSVEKEKYD---IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
              + +       V           S             +           D  + + + 
Sbjct: 147 LRSILDTVPDAMIVIDGHGIMRFFSSAAERLFGYSEGEAIGRNVSELMAGPDRARHDNHL 206

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
                            +   +     +   L      S               + + + 
Sbjct: 207 DRYRASGERHIIGIGRIVTGRRRDGTTFPIHLTIGEMRSGGEPHFTGFIRDLTEYQQTQA 266

Query: 321 LTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
              E   +      V     +     +                 G   LL      +   
Sbjct: 267 RLHELQSEL---VHVSRLSAMGEMASALAHELNQPLSAISNYMKGSRRLLSGSNDPNRPK 323

Query: 381 IKPVMLYRSDRTCIAA----SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           I+  M   +++   A       R    +   E  +       E+A        +      
Sbjct: 324 IEAAMDRAAEQALRAGQIIRRLRDFVSRGESEKRVESLAKLIEEAGALGLTGAREQGVLL 383

Query: 437 DVDTRINKRKMEIEVMQLCSIL----EATSDGIAIINREGIILSTNRAVSKL 484
             +       + ++ +Q+  +L        + +A  ++  ++++ NR    +
Sbjct: 384 RFNLDRQSDMVLVDRVQIQQVLVNLFRNAVEAMAHSDKRELVVANNRVADHM 435


>gi|291571943|dbj|BAI94215.1| multi-sensor hybrid histidine kinase, fragment [Arthrospira
           platensis NIES-39]
          Length = 730

 Score =  283 bits (725), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 74/313 (23%), Positives = 141/313 (45%), Gaps = 26/313 (8%)

Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKK----LPFSSCYSLTMHDISEWKQEKNKLSHAK 575
              +          ++  L+     ++             L +  +       N L   +
Sbjct: 2   RGEKVSALEDSWIREDGSLIYHGWTVRPWYRNSGEVGGIILVIIPL-------NNLVETR 54

Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
             A      KS FLA++SHEIRTP++ ++G  E++      P    +  +Y   I RS  
Sbjct: 55  NAALDAVQFKSRFLAQMSHEIRTPMSGVLGMVELLMQTHLTP----QQKDYTQTIYRSAK 110

Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695
            +L ++N++LD+SK+E+G+ +L      L + +   + L+ + A +K++ +      NIP
Sbjct: 111 HLLTVINEILDLSKLEAGETHLESHDFDLQDCLETVVDLLSVKAEDKQLELIILLEPNIP 170

Query: 696 R-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT----SNEEVILRVRDTGVGMTN 750
           R +  D   ++Q+ +N+++NAI FT SG  III  T          +   + DTG+G+++
Sbjct: 171 RYLKGDGMRLQQVLINLVNNAIKFTQSG-HIIIRLTPRFINQDQINIYFSIEDTGLGISD 229

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII--- 807
               +  +PF    ++   +  GTGLGL + + +V+   G+  + S    G++       
Sbjct: 230 ELQPQLFQPFSPASSATNRQYGGTGLGLSICQHLVNLMGGEIGVNSQEGDGSIFWFTANF 289

Query: 808 FP--LYDTSHPHD 818
            P  L +   P +
Sbjct: 290 LPSELSEIPAPKE 302


>gi|126462327|ref|YP_001043441.1| PAS/PAC sensor signal transduction histidine kinase [Rhodobacter
           sphaeroides ATCC 17029]
 gi|332558349|ref|ZP_08412671.1| PAS/PAC sensor signal transduction histidine kinase [Rhodobacter
           sphaeroides WS8N]
 gi|126103991|gb|ABN76669.1| PAS/PAC sensor signal transduction histidine kinase [Rhodobacter
           sphaeroides ATCC 17029]
 gi|332276061|gb|EGJ21376.1| PAS/PAC sensor signal transduction histidine kinase [Rhodobacter
           sphaeroides WS8N]
          Length = 346

 Score =  283 bits (725), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 79/362 (21%), Positives = 146/362 (40%), Gaps = 29/362 (8%)

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
            +LE     + +I  +  I + N    +LFG             ++       +   +  
Sbjct: 8   QLLEGVPLPLVLIGPDERIRAANAPAQRLFGAASVA------RHYVMAMRQPALLDAIEG 61

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575
            + LD       I  G ++E       +   ++   SC      DI+E +Q         
Sbjct: 62  AIRLDRPGRARYIITGPSREVTY-RATVTPVRIHGESCALCAFEDITEQEQM-------- 112

Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
                  + + DF+A VSHE+RTPLTA++GF E ++              +   + R   
Sbjct: 113 ------GAIRRDFVANVSHELRTPLTALLGFIETLQGAARD--DPAARSRFLGIMAREAG 164

Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695
            +  +V DLL +S++ES +      PV +   + +AI+ ++  A    + I+        
Sbjct: 165 RMNRLVQDLLSLSRVESEERVRPKTPVDVTAVIGQAIAALRPMAEAAGVEIQRQGEAGPI 224

Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE------EVILRVRDTGVGMT 749
            +  D   + Q+  N++ NA+ +  SG  + +  +            V + V D G G+ 
Sbjct: 225 LLPGDPDQLTQVFHNLIENAVKYGASGKLVTVGISRDPEGLARLGPAVRIEVVDRGEGID 284

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
              L +  + F ++ N +     GTGLGL + K +V+ + G+F I S   +G+   +  P
Sbjct: 285 AIHLPRLTERFYRVDNHRSREKGGTGLGLAIVKHIVNRHRGRFLIESELGQGSRFIVTLP 344

Query: 810 LY 811
           L 
Sbjct: 345 LA 346


>gi|51595548|ref|YP_069739.1| two component histidine kinase-sensor [Yersinia pseudotuberculosis
           IP 32953]
 gi|51588830|emb|CAH20444.1| possible 2-component Histidine kinase-sensor [Yersinia
           pseudotuberculosis IP 32953]
          Length = 604

 Score =  283 bits (725), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 82/376 (21%), Positives = 162/376 (43%), Gaps = 28/376 (7%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           ++++ +++        I+     G+   N E +I   N    K+FG   + +  +     
Sbjct: 234 QLSRHQLQDSKAISTEIINNLPIGLITTNEEQLISVVNHTAEKIFGISKDILTGQNIHQA 293

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL---- 556
           L      ++        S   +  +E       KE  ++ L I +  +   +   L    
Sbjct: 294 LPPEWNLLVK------KSQRHQPVIEHEFDYKLKEGLIIPLSISVANIVNHNGSFLGNIF 347

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
              D+ E +Q + ++   +K+A        +  A V+HEIR PL++I GF++    +   
Sbjct: 348 IFRDMREVRQLQEEIRRKEKLA-----AIGNLAAGVAHEIRNPLSSIKGFAKYF--EGHS 400

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
           P G+    E A  + +  + +   V +LL + +      +L  + V+++E ++ ++ L++
Sbjct: 401 PQGSEEQ-ELAKVMIKEVDRLNRAVTELLGLVRPS----DLRIQLVNINEIIAHSLHLIR 455

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
             A+ K+I I+     N+PR+  D     Q  LN+  NAI      G + I+       +
Sbjct: 456 QDADSKKITIQFISNENLPRVEIDPDRFTQALLNLYLNAIQAMGRAGTLEIALALVEESK 515

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           + + V DTG G+   +LE    P+     S      GTGLGL + + +++ + G+  + S
Sbjct: 516 LRISVIDTGKGIRAEDLENIFNPYFTTKAS------GTGLGLAIVQKVIEEHQGRITVTS 569

Query: 797 TPAKGTLIEIIFPLYD 812
            P  GT  ++  PL  
Sbjct: 570 HPQSGTRFDMTIPLVQ 585


>gi|88858180|ref|ZP_01132822.1| sensor protein barA [Pseudoalteromonas tunicata D2]
 gi|88819797|gb|EAR29610.1| sensor protein barA [Pseudoalteromonas tunicata D2]
          Length = 925

 Score =  283 bits (725), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 82/241 (34%), Positives = 135/241 (56%), Gaps = 8/241 (3%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L+ AKK A+  +  KSDFLA++SHE+RTPL  ++GF+  +         N    +Y + 
Sbjct: 274 QLNIAKKEAQDANRVKSDFLAKMSHELRTPLNGVVGFTRQLYKTPL----NKHQKDYLDT 329

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I+ S N +L I+ND+LD SK+E+G M L      L + V+E ++L+   A++K + +  +
Sbjct: 330 IELSANSLLAIINDILDFSKLEAGAMELESIHFQLRDTVNEVLTLLAPSAHDKNLELSIN 389

Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVILRVR--DTG 745
             +N+P  ++ D    KQI +N++SNAI FT SG   I +   H +N+   + V   D+G
Sbjct: 390 IHDNVPDSLIGDPTRFKQILINLISNAIKFTESGHVLIDVDCRHYANQRTSIFVAINDSG 449

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G++  + +     FGQ  +S   +  GTGLGL + K +V+A  G   + S   KG+   
Sbjct: 450 IGISANKQDALFSAFGQADSSITRKFGGTGLGLIITKHLVEAMGGHISLNSAVGKGSCFT 509

Query: 806 I 806
            
Sbjct: 510 F 510


>gi|262402892|ref|ZP_06079453.1| phosphate regulon sensor protein phoR [Vibrio sp. RC586]
 gi|262351674|gb|EEZ00807.1| phosphate regulon sensor protein phoR [Vibrio sp. RC586]
          Length = 433

 Score =  283 bits (725), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 75/402 (18%), Positives = 152/402 (37%), Gaps = 30/402 (7%)

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDT-RINKRKMEIEVMQLCSILEATSDGIAI 467
           ++           +                   R  ++++   + +  +  E+  D + +
Sbjct: 54  SAWLWDEKRLTPPSGTGNWESLFNGIYRLQQRHRKKRKELTNLIRRFRNGAESLPDAVVV 113

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
              EG I+  NR    L G+   D   +P +  L          ++  +   D    LE 
Sbjct: 114 FRSEGNIVWCNRLAQHLLGFRWPDDAGQPISNLLRTP------DFIKYLKKDDFTDPLEM 167

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
                +       L + I        + + + D+++ KQ +                + +
Sbjct: 168 ----RSPLNSDRMLELRIVPYTEGE-HLMVVRDVTQLKQLEG--------------MRRN 208

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           F A VSHE+RTP+T + G+ E+   +    L  P + +    +    N +  +VN LL +
Sbjct: 209 FFANVSHELRTPMTVLQGYLEM--TEDPDVLAGPMWSKAHGVMTEQLNRMNSLVNQLLTL 266

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707
           SKIE+  M    + V +   +          + + +  +      ++ ++LAD   ++  
Sbjct: 267 SKIEASPMVDLDQVVDVPAMLEVLEKEALSLSGDAQHKLHFEVDKSL-KVLADDDQLRSA 325

Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
             N++ NA+ +TP G QI +    +S     L V D G G+    L +  + F ++  ++
Sbjct: 326 ISNLVYNAVKYTPPGAQIDVRWYRSSKG-ACLEVEDKGEGIEPQHLHRLTERFYRVDKAR 384

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
                G+GLGL + K  +  +     I+S    G+    + P
Sbjct: 385 SRDTGGSGLGLAIVKHALAHHDSHLDIYSKVGVGSKFSFVLP 426


>gi|78356740|ref|YP_388189.1| periplasmic sensor hybrid histidine kinase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78219145|gb|ABB38494.1| periplasmic sensor hybrid histidine kinase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 907

 Score =  283 bits (725), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 78/266 (29%), Positives = 131/266 (49%), Gaps = 12/266 (4%)

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           +I E  + ++ L  AK++AE+    K +FLA +SHE RTP+ AIIG SEVI         
Sbjct: 355 EIEERIKAEHALREAKELAEEADKAKGEFLANISHEFRTPMNAIIGMSEVILKTELSAP- 413

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
                 +   ++++ + +LD++N +LD S+ ESGK  L   P  L    ++   +    A
Sbjct: 414 ---QRNHLTVLNKAAHSLLDLLNTILDFSRYESGKATLALSPFMLHAPFTQVHEMFLSAA 470

Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIST----THTSN 734
             K + ++   A ++PR +  D   ++QI +N++SNA+ FT +G  I I+       +  
Sbjct: 471 AAKGLPLQLELAPDMPRAVEGDEGKIRQILVNLVSNALKFTDTG-NITITCKAFPAPSGR 529

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
            ++   V DTG+G+   +       F Q   S      GTGLGL + K + D   G   +
Sbjct: 530 ADICFSVSDTGIGIEKEKHSAIFDSFTQADGSYTRTYGGTGLGLSICKLLADMMGGSITV 589

Query: 795 FSTPAKGTLIEIIFPLYDTSHPHDCI 820
            S P +G+   +  PL   + P + +
Sbjct: 590 RSAPRQGSTFTVCLPLK--AVPEERV 613


>gi|302916471|ref|XP_003052046.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256732985|gb|EEU46333.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 2624

 Score =  283 bits (725), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 76/258 (29%), Positives = 129/258 (50%), Gaps = 16/258 (6%)

Query: 562  SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
            ++ K  + +     K+AE+ +  KS FLA VSHE+RTPL  +IG SE++++       + 
Sbjct: 1918 TKAKDAEAEAKRNVKLAEEAAKAKSIFLANVSHELRTPLNGVIGNSELLRDSDL----DK 1973

Query: 622  RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV----QL 677
              +E A+ I  S +L+L ++ND+LD SK+E+ KM L+    + ++ V E +  V    + 
Sbjct: 1974 DQLEMADSIRVSADLLLTVINDILDFSKMEADKMKLYIIAFNPEDMVREVVRAVSYSNRE 2033

Query: 678  YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT----S 733
              ++K + I          I  D   + Q+  N++ N++ FT  G  I I          
Sbjct: 2034 KTSKKNVKIVQDINLPPMLIYGDPIRLHQVLGNLIGNSLKFTEDGS-ITIGARLDKETKE 2092

Query: 734  NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD-ANMGKF 792
            +  +   VRDTG+G+   +L K  +PF Q   S   +  G+GLGL + K++++    GK 
Sbjct: 2093 HAMLTFWVRDTGIGIPPQQLAKLFQPFSQADASTARKYGGSGLGLSICKSLIETMMKGKI 2152

Query: 793  YIFSTPAKGTL--IEIIF 808
             + S    GT     + F
Sbjct: 2153 RLESEENVGTTAWFTVTF 2170


>gi|306834321|ref|ZP_07467438.1| phosphate regulon sensor histidine kinase [Streptococcus bovis ATCC
           700338]
 gi|304423494|gb|EFM26643.1| phosphate regulon sensor histidine kinase [Streptococcus bovis ATCC
           700338]
          Length = 550

 Score =  283 bits (725), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 74/394 (18%), Positives = 156/394 (39%), Gaps = 32/394 (8%)

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
            P E       +     I     +    +  +E    +  +I+    +G+ +++    I+
Sbjct: 186 HPLENDAYEEISPLLRRIARHQKEVTEREVVIEQRQSEFDTIISKIKEGMILLDNNCRII 245

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
           S N+A   +       + +    +    +  + +   L       + Q           +
Sbjct: 246 SINQAAQDILQTDQTCLGKDMLQILRNLSLNNWLEKGLQGRKQEGILQL----------D 295

Query: 536 EKLLSLRIIIKKLPF-SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
           +    + +         +  ++   D++E  Q +                + +F A VSH
Sbjct: 296 DAHYKVMVRPIHSEDKVTGLAILFFDVTEQLQAE--------------QLRREFTANVSH 341

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           E++TPL  I G+SE++ +        P+   +A  I      ++ +V D++ +S ++  +
Sbjct: 342 ELKTPLHLISGYSEMLASDVVAQKDVPQ---FAEKIHSESQRMIQLVEDIIKLSHLDESE 398

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714
             L  EPV+L +   E +  +   ANE+ I +          I  +   +  +  N+  N
Sbjct: 399 -ELAMEPVNLYQISEEVLDSLSAKANERHINLHLLGEPA--YITGNHALIHSLIYNLCDN 455

Query: 715 AIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           AI +    G + +  T   ++ ++L V+DTGVG+   E E+  + F ++  S+  +  GT
Sbjct: 456 AIIYNRDKGDVTVDITSNEDD-IVLTVQDTGVGIAKDEQERIFERFYRVDKSRSKKLGGT 514

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           GLGL + K  V+ +     + S    GT + + F
Sbjct: 515 GLGLSIVKHAVNQHHADIKVESQLGLGTKMTVTF 548


>gi|33598500|ref|NP_886143.1| phosphate regulon sensor protein [Bordetella parapertussis 12822]
 gi|33603444|ref|NP_891004.1| phosphate regulon sensor protein [Bordetella bronchiseptica RB50]
 gi|33574629|emb|CAE39280.1| phosphate regulon sensor protein [Bordetella parapertussis]
 gi|33577568|emb|CAE34833.1| phosphate regulon sensor protein [Bordetella bronchiseptica RB50]
          Length = 436

 Score =  283 bits (725), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 85/455 (18%), Positives = 167/455 (36%), Gaps = 32/455 (7%)

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
            L TL      +    +   ++       +  +A    + W       ++    +  +  
Sbjct: 3   WLRTLFMIAFWAVMALLAQWLIGNPAGWLLFGAAMAAMLLWRSWRLHLVSRWAHDPESAP 62

Query: 425 PENMPQNGIEPEDVDT--RINKRKMEIEVMQLCSIL---EATSDGIAIINREGIILSTNR 479
           P  +         +    R   R++      + S+L   +A  DG+  +N +  I   NR
Sbjct: 63  PAAVGPWDDILAPLYRYTRARARELAETRETMQSMLAAAQALPDGVVTLNEDFQIDWANR 122

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
              +  G  +           L          ++         + +      + +E    
Sbjct: 123 MARRHLGLRLPADRGHNLLNLLRAP------EFVAYAHRGHWPEPILVRLSLNGQER--- 173

Query: 540 SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
            + +I      S+   L   D+++ ++ +                + DF+A VSHE+RTP
Sbjct: 174 -VMMIHLAGYASNQRLLISRDVTQIERLETT--------------RRDFVANVSHELRTP 218

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           LT + GF E ++      L   +  +Y   +      +  IV DLL +S +ES       
Sbjct: 219 LTVLAGFLETLRELPAEALPAEQRDQYMAMMHEQARRMQAIVEDLLTLSTLESS-PEADP 277

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719
             V +   +  A   V+  +N + +         +  +L     +     N+L+NA+ +T
Sbjct: 278 LAVDVGALLRTARQQVEALSNGRHV-FEWQIEEGL-DVLGSGTELASALSNLLTNAVRYT 335

Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
           P GG+I +     ++ E +  V+DTG+G+    L +  + F ++   +     GTGLGL 
Sbjct: 336 PDGGRITVRWRRGADGEALYSVQDTGIGIPARHLPRLTERFYRVDRGRSRAAGGTGLGLA 395

Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           + K +   +     I S P KG+   + FP    +
Sbjct: 396 ITKHIAMRHDADLLIDSEPGKGSTFTLRFPAERVT 430


>gi|221211821|ref|ZP_03584799.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia multivorans
           CGD1]
 gi|221167906|gb|EEE00375.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia multivorans
           CGD1]
          Length = 528

 Score =  283 bits (725), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 78/376 (20%), Positives = 148/376 (39%), Gaps = 20/376 (5%)

Query: 448 EIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
                +  +++ + +D  + +++ EG +++ N    ++ GY   +I+   F+ F      
Sbjct: 26  RFAEFRFQTVVASITDYAVFMLDTEGHVVTWNAGAERIKGYRASEIVGDHFSRFYPPEAL 85

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDIS 562
           +        +         E       K+  L    + I  +   S     +     D++
Sbjct: 86  AAGRPSY-GLREAATHGRFEDEGWRVRKDGSLFWANVTITAVRDESGELCGFIKITRDMT 144

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E ++ +          E  +   S F+A ++HE+R  L  +     V+++         +
Sbjct: 145 ERRRLEE--------LETSTHRLSVFIAMLAHELRNHLAPLRHSVGVLQSLPDPAPALAQ 196

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             +    + R    +  +V+DLLD+ +I SGK+ L   PV++ + V+  +  VQ     +
Sbjct: 197 CRDA---VHRQVAQLTRLVDDLLDVGRITSGKVELEDRPVTVRDLVARGVESVQPKLATR 253

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
              I          +  D   + Q+  N+L NA  F+P GG+I IS        V +RV 
Sbjct: 254 EQQIHVDLPPEPIVLRGDDARLVQVLHNLLDNASKFSPRGGRIDISARVE-GPVVAIRVI 312

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKG 801
           D GVG+    LE     F Q   +     +G GLGL + ++ V+ + G     S  P  G
Sbjct: 313 DRGVGIAPGALESIFDLFEQ-EGAAHRPTDGFGLGLAICRSFVELHGGMISAESDGPGHG 371

Query: 802 TLIEIIFPLYDTSHPH 817
               I  P+   +   
Sbjct: 372 ATFIIRLPVERAARAE 387



 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/304 (9%), Positives = 76/304 (25%), Gaps = 24/304 (7%)

Query: 58  NQESVSNTNYLDSENTFVFDPIPRTVR--FTWNIDAHGYLKEISEELPKTIGNYAFKMIG 115
              +    + L     F F  +  ++     + +D  G++   +    +  G  A +++G
Sbjct: 14  PSPAPDGGDLLHRFAEFRFQTVVASITDYAVFMLDTEGHVVTWNAGAERIKGYRASEIVG 73

Query: 116 MRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREF 175
                      +        L +       +   W +         ++    +   + E 
Sbjct: 74  DHFSRFYPPEALAAGRPSYGLREAATHGRFEDEGWRVRKDGSLFWANVTITAVRDESGEL 133

Query: 176 SGFRGFGIVHVNRVDNDPRALG----KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231
            GF    I            L     +         HE++   + +      + S   P 
Sbjct: 134 CGF--IKITRDMTERRRLEELETSTHRLSVFIAMLAHELRNHLAPLRHSVGVLQSLPDPA 191

Query: 232 PH------------LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTIN 279
           P              ++   V  L +        ++ E  P+   +  +   +     + 
Sbjct: 192 PALAQCRDAVHRQVAQLTRLVDDLLDVGRITSGKVELEDRPVTVRDLVARGVESVQPKLA 251

Query: 280 LNQYTKKQYFGT----LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV 335
             +             L+ +     + L +    +       G       V+   +   V
Sbjct: 252 TREQQIHVDLPPEPIVLRGDDARLVQVLHNLLDNASKFSPRGGRIDISARVEGPVVAIRV 311

Query: 336 YSHG 339
              G
Sbjct: 312 IDRG 315


>gi|218440934|ref|YP_002379263.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
 gi|218173662|gb|ACK72395.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
          Length = 1013

 Score =  283 bits (725), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 83/253 (32%), Positives = 136/253 (53%), Gaps = 15/253 (5%)

Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
           +  L  A + AE  +  KS+FLA +SHEIRTP+ AI+GF +++K++    +  P+   Y 
Sbjct: 514 QTALFKAAQQAEAANQAKSEFLANMSHEIRTPMNAILGFCDLLKDR----ITEPQTRGYV 569

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
           + I  SG  +L+++ND+LD+SKIE+GK+ L+FEP+ L E + E   +    A +K + + 
Sbjct: 570 DLISASGKTLLELINDILDLSKIEAGKLELNFEPLYLRELIQEIQQIFFQKALKKNLSLL 629

Query: 688 TSFANNIP-RILADLRSVKQIALNILSNAIHFTPSG-GQIIISTTHTSNE---------E 736
                N+P  IL D   ++QI  N++ NA+ FT  G  +I +      +           
Sbjct: 630 VEIQENVPNTILFDEIRLRQILFNVVGNALKFTEQGYVKISVDAQTNDDNCESNQTNTIN 689

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           +IL V D+G+G+   +  +    F Q       +  GTGLGL + + + +   GK  + S
Sbjct: 690 LILSVEDSGIGIAQDQQIRIFDAFKQTEGQSTRKYGGTGLGLAITRRLTEMLEGKIDLQS 749

Query: 797 TPAKGTLIEIIFP 809
              KGT+ + IFP
Sbjct: 750 EVGKGTIFKFIFP 762


>gi|327541868|gb|EGF28379.1| sensory transduction histidine kinase [Rhodopirellula baltica WH47]
          Length = 601

 Score =  283 bits (725), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 78/252 (30%), Positives = 126/252 (50%), Gaps = 8/252 (3%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E     ++ +       + +  K+DFLA +SHE+RTPL +IIGFSEV++        + +
Sbjct: 328 ELDARVDQFAQLNLQLYEANRLKTDFLANMSHELRTPLNSIIGFSEVLQ---GIDSLSEK 384

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
              YA+ I +SG L+L+++ND+LD++K+E+GKM +      L   V     ++Q  + +K
Sbjct: 385 QRRYASNIQKSGRLLLEMINDILDLAKVEAGKMEVRRSEFQLSRLVGAQCDMIQSLSEDK 444

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
            I +     +++P    D   + QI  N+LSNAI FTP GG I +      ++   L V 
Sbjct: 445 NISLSVEVPDDLPVAYQDPNKLGQILNNLLSNAIKFTPEGGMITVRVVDLHDDRFRLSVT 504

Query: 743 DTGVGMTNYELEKAMKPFGQIPN-----SQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
           DTGVG+ + +     + F Q               GTGLGL + K +     G+    S 
Sbjct: 505 DTGVGVADEDQPIIFQKFRQSKKVLDGDGLTREFAGTGLGLSIVKELAVLLGGEIDFQSE 564

Query: 798 PAKGTLIEIIFP 809
             +G+   +I P
Sbjct: 565 LGRGSTFWVILP 576


>gi|223938141|ref|ZP_03630038.1| multi-sensor hybrid histidine kinase [bacterium Ellin514]
 gi|223893185|gb|EEF59649.1| multi-sensor hybrid histidine kinase [bacterium Ellin514]
          Length = 846

 Score =  283 bits (725), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 93/666 (13%), Positives = 196/666 (29%), Gaps = 58/666 (8%)

Query: 174 EFSGFR----GFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS 229
           E  G+R    GF   +  R        G       S                  I + + 
Sbjct: 54  EVGGYRMAWVGFAEQNERRSVRPVACAGFESGYLESANITWADEPRGRGPVGTSIRTGEF 113

Query: 230 PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYF 289
                  ++         A       +   PL  +             ++  +  + +  
Sbjct: 114 CVTRNIPEDPAFHPWREQAVLRGYNSSIALPLRNNGRVFGTLSMYAEEVDAFESKEVEIL 173

Query: 290 GTLQNNSKESFEYLSHRNHPSLSA--YFDEGENLTPETVDKCPIPFFVYSHGN-LFYANP 346
             L  +       +        SA    +E +    +      +  +       L   + 
Sbjct: 174 KQLAEDLAFGLTVVLRTRAERRSAMEALEESQRKLEQAQRIAHVGHWERDLKTGLITCSD 233

Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
               +   +             L        +  +  V              R   I   
Sbjct: 234 EIYRILGLEPQP--GKLYRSEFLKLVHPEDRDRLVAEVDEATRLSQHFDVEYR---IIRP 288

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
                 +            ++    GI  +    +     +     +   + E+  +   
Sbjct: 289 DGGVRFLHSQGSVMRGDTKKSDRVFGIAQDITQRKRAIEALMESEQRFRQVTESIDEVFW 348

Query: 467 I--INREGIILSTNRAVSKLFGYPVEDILRKPFTVF--LEQNTPSVMNHYLTEILSLDLR 522
           +  ++R   I   + A  +++G   E + + P +    +     + +     +       
Sbjct: 349 LTNLDRNETI-YISPAYERIWGRTCESLYKSPQSWLEAVHPEDQARVKEAFQKFQKTG-- 405

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIA 578
            + E+       +     +      +          +    DI+E K+ + +   A+++ 
Sbjct: 406 -SFEQEFRILRPDGVQRWIHDRGFPVRDKQGNLYRLAGVAEDITERKELEKQFLRAQRM- 463

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
                        ++H++   L  I+   E++K +  G        +    I+ +     
Sbjct: 464 ----ESIGTLAGGIAHDLNNMLAPILMTCELMKMELPG----EENQQLIAMIEGNAKRGS 515

Query: 639 DIVNDLLDISK-IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697
           ++V  +L  ++ +E   ++L          + E  S++      K I I+T  A N+  +
Sbjct: 516 ELVKQVLSFARGVEGCYLSLQPR-----HLIREIASIIGETFP-KSIRIQTRIAENLWPL 569

Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIIS--------------TTHTSNEEVILRVRD 743
             D   + Q+ LN+  NA    PSGG + I+                      V+++V D
Sbjct: 570 SGDPTQLHQVMLNLSLNARDAMPSGGDLTITAENIEIDAANRPMNLQAKPGSYVVIKVTD 629

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TG G+     EK   PF          GEGTGLGL  A  +V ++ G   ++S P KG+ 
Sbjct: 630 TGTGIAPEMREKIFDPFFTTK----EVGEGTGLGLSTALGIVKSHSGFINVYSEPGKGST 685

Query: 804 IEIIFP 809
            E+  P
Sbjct: 686 FEVWLP 691


>gi|261212176|ref|ZP_05926462.1| phosphate regulon sensor protein phoR [Vibrio sp. RC341]
 gi|260838784|gb|EEX65435.1| phosphate regulon sensor protein phoR [Vibrio sp. RC341]
          Length = 433

 Score =  283 bits (725), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 75/402 (18%), Positives = 152/402 (37%), Gaps = 30/402 (7%)

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDT-RINKRKMEIEVMQLCSILEATSDGIAI 467
           ++           +                   R  ++++   + +  +  E+  D + +
Sbjct: 54  SAWLWDEKRLTPPSGTGNWESLFNGIYRLQQRHRKKRKELTNLIRRFRNGAESLPDAVVV 113

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
              EG I+  NR    L G+   D   +P +  L          ++  +   D    LE 
Sbjct: 114 FRSEGNIVWCNRLAQHLLGFRWPDDAGQPISNLLRTP------DFIKYLKKDDFTDPLEM 167

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
                +       L + I        + + + D+++ KQ +                + +
Sbjct: 168 ----RSPLNSDRMLELRIVPYTEGE-HLMVVRDVTQLKQLEG--------------MRRN 208

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           F A VSHE+RTP+T + G+ E+   +    L  P + +    +    N +  +VN LL +
Sbjct: 209 FFANVSHELRTPMTVLQGYLEM--TEDPDVLAGPMWSKAHGVMTEQLNRMNSLVNQLLTL 266

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707
           SKIE+  M    + V +   +          + + +  +      ++ ++LAD   ++  
Sbjct: 267 SKIEASPMVDLDQVVDVPAMLEVLEKEALSLSGDAQHKLHFEVDKSL-KVLADDDQLRSA 325

Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
             N++ NA+ +TP G QI +    +S     L V D G G+    L +  + F ++  ++
Sbjct: 326 ISNLVYNAVKYTPPGAQIDVRWYRSSKG-ACLEVEDKGEGIEPQHLHRLTERFYRVDKAR 384

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
                G+GLGL + K  +  +     I+S    G+    + P
Sbjct: 385 SRDTGGSGLGLAIVKHALAHHDSHLDIYSKVGVGSKFSFVLP 426


>gi|330504046|ref|YP_004380915.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina NK-01]
 gi|328918332|gb|AEB59163.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina NK-01]
          Length = 916

 Score =  283 bits (725), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 80/245 (32%), Positives = 143/245 (58%), Gaps = 8/245 (3%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  A+K A + S  KS+FLA +SHEIRTPL  I+GF+ +++     P    R  +Y + 
Sbjct: 269 ELDFARKEALEASRIKSEFLANMSHEIRTPLNGILGFTNLLQKSELSP----RQQDYLST 324

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I++S + +L I+N++LD SKIE+GK+ L   P +L + + + ++++   A+EK++ + + 
Sbjct: 325 IEKSADSLLGIINEVLDFSKIEAGKLVLESIPFNLRDLLQDTLTILAPAAHEKQLELVSL 384

Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII---ISTTHTSNEEVILRVRDTG 745
              + P  +  D   +KQ+  N++SNAI FT  G  ++   +    T + ++ + V DTG
Sbjct: 385 IYRDTPLALRGDPLRLKQVLTNLVSNAIKFTREGTIVMRAMVEDESTDSAQLRISVMDTG 444

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+++ +L    + F Q  NS   +  GTGLGL ++K +++   G+  + STP +G+   
Sbjct: 445 IGLSDEDLRALFQAFSQADNSLSRQAGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFW 504

Query: 806 IIFPL 810
           I   L
Sbjct: 505 ITLTL 509


>gi|298483471|ref|ZP_07001648.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
 gi|298270419|gb|EFI12003.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
          Length = 869

 Score =  283 bits (725), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 94/538 (17%), Positives = 184/538 (34%), Gaps = 37/538 (6%)

Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANP 346
               ++ N +ES   +  +    +     E  N               Y    ++ + N 
Sbjct: 349 IVWLMRANRRESKRRIQAQTRLLVQNKLVEQRNEFDNVFHSIRDGVITYDTDLHIHFTNR 408

Query: 347 SFLLLTKYKSVD--DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC--IAASARLHT 402
           S L +                  ++        +   K +    S      I   A +  
Sbjct: 409 SLLQMLHLPYEAGGRFYEGMMAGSIFKIYYNGQDILHKMLKQVASKGESVKIPQGAFMKE 468

Query: 403 IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
           +  ++   ++   +P    +             ++          E++       ++ +S
Sbjct: 469 VHSDKYFPVSGEIVPIRSKDAITGMALSARNISDE----------EMQKRFFDMAVDESS 518

Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVE--DILRKPFTVFLEQNTPSVMNHYLTEILSLD 520
                 + E       +   K  GY      I R      +  +    +       L   
Sbjct: 519 IYPWQFDMETNCFIFPQGFLKRLGYDESVTTIPRDEMDRTIHPDDLKEIRPLFNRAL-TG 577

Query: 521 LRQTLEKITLGSTKEEKLLSLRII---IKKLPFSSCY--SLTMHDISEWKQEKNKLSHAK 575
                           +          I  L   S Y        I  +K  + ++  A+
Sbjct: 578 EDSNTRLNFRQRNVNGEYEWWEYRSSVITGLTQDSLYNILGVCQSIQRYKTAEQEMREAR 637

Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
             A +    KS FLA +SHEIRTPL AI+GFS+++ +       +    ++   I+++  
Sbjct: 638 DKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDT--SGFTSEEIAQFIGTINKNCG 695

Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN-NI 694
           L+L ++ND+LD+S+IESG M   F   +L   +       +L      + +       + 
Sbjct: 696 LLLALINDILDLSRIESGTMEFMFAEHNLPLLLKTVHDSQRLNMPP-GVELVLRMPESDK 754

Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN---EEVILRVRDTGVGMTNY 751
             +  D   ++Q+  N+++NA  FT SG    I+  +  +       + V DTGVG++  
Sbjct: 755 KYLTTDNVRLQQVVNNLINNAAKFTSSG---FITFGYEDDEVPGYTRIFVEDTGVGISEE 811

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            +    + F ++ N      +G GLGL + + +++   G   + S   KGT   +  P
Sbjct: 812 GIRHIFERFYKVDNFT----QGAGLGLSICQTIIERLNGTISVTSEVGKGTRFTVRLP 865


>gi|269965136|ref|ZP_06179270.1| histidine protein kinase PhoR [Vibrio alginolyticus 40B]
 gi|269830122|gb|EEZ84349.1| histidine protein kinase PhoR [Vibrio alginolyticus 40B]
          Length = 432

 Score =  283 bits (725), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 72/364 (19%), Positives = 147/364 (40%), Gaps = 29/364 (7%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           ++   + +  +  E+  D + +   EG I+  N+    L G+   +   +P +  +    
Sbjct: 92  ELTNLIRRFRNGAESLPDAVVVFRAEGNIVWCNKLAQHLLGFHWPEDSGQPISNLIRTPD 151

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
                +       L++R  L    +          L + I        + + + D+S+ K
Sbjct: 152 FIKYLNKKDFSEPLEMRSPLNVERM----------LELRIVPYTEGE-HLMVVRDVSQLK 200

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           Q +                + +F A VSHE+RTP+T + G+ E+   +    +  P + +
Sbjct: 201 QLEG--------------MRRNFFANVSHELRTPMTVLQGYLEM--TEDPDMVVGPMWSK 244

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
               +    N +  +VN LL +SKIE+  M+   E V++   +          + + +  
Sbjct: 245 AHGVMTEQLNRMNSLVNQLLTLSKIEAAPMHELEEVVNVPAMLEVLEKEAVSLSGDNQHK 304

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           ++     ++ R+L D   ++    N++ NA+ +TP G  I +    TS     L V D+G
Sbjct: 305 LKFDVDASL-RVLGDDDQLRSAISNLVYNAVKYTPPGANINVRWFQTSQG-ACLEVEDSG 362

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
            G+    L +  + F ++  ++     G+GLGL + K  +  +     I S    G+   
Sbjct: 363 DGIEPQHLHRLTERFYRVDKARSRDTGGSGLGLAIVKHALSHHDSHLEIHSEVGVGSKFS 422

Query: 806 IIFP 809
            + P
Sbjct: 423 FVLP 426


>gi|189912856|ref|YP_001964745.1| Sensor histidine kinase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|189913181|ref|YP_001964410.1| Histidine kinase sensor protein [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|167777532|gb|ABZ95832.1| Sensor histidine kinase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167781249|gb|ABZ99546.1| Histidine kinase sensor protein [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 774

 Score =  283 bits (725), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 83/391 (21%), Positives = 162/391 (41%), Gaps = 24/391 (6%)

Query: 424 FPENMPQNGIEPEDVDTRINKRK--MEIEVMQLCSILEATSDGIAIINRE-GIILSTNRA 480
             E + +       ++ ++++    ++    +   + E + + IA+++ + G IL  N  
Sbjct: 397 QREEITELENLISILEIKLDRSAVDLQYSEEKYRYLFEFSREAIALVDADTGSILEANNQ 456

Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
              L GY   DI +      +  N  S    + +++ S  +    +   L     +  + 
Sbjct: 457 FRSLTGYTRGDITKMTIEDIILGNQVSNQLRFGSDLSSDTMLSLPDVEILAKDGSKLEVD 516

Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
           +      L     Y +     SE K+++                + +F++ VSHE+R+P+
Sbjct: 517 ISFTSILLSPKKRYQVQFRPNSERKEQE--------------RLQHEFISNVSHELRSPM 562

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI--SKIESGKMNLH 658
           T I G+ E  K+    P  N  +I     ID++   +  ++ +LL +  S+ E       
Sbjct: 563 TNIRGYLEFFKSDSSLPF-NKEHINMLEVIDKNAKRLSFLIENLLKLTTSR-EKDNEAEV 620

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718
            E       + + I +    A  K I    +    +  I        QI  N+  NA+ +
Sbjct: 621 IEIFDPVPVIEDVIHMNSHLAKGKPIEWDLTLKKGLL-IRGIRFEFSQIITNLYVNALKY 679

Query: 719 TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
           T  G +I IS     N +V + V DTG+G+      +    F +IP++   +  GTGLGL
Sbjct: 680 TFKG-KIGISLR-EFNGKVEIIVEDTGIGIDPNYKNQIFDRFFRIPSTDNKKIGGTGLGL 737

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            + K++V+   G+ ++ S+  +G+   I FP
Sbjct: 738 SIVKSLVEKMSGEIFVESSMGEGSKFTIYFP 768


>gi|148242922|ref|YP_001228079.1| two-component system sensor histidine kinase NblS [Synechococcus
           sp. RCC307]
 gi|147851232|emb|CAK28726.1| Two-component system sensor histidine kinase NblS [Synechococcus
           sp. RCC307]
          Length = 644

 Score =  283 bits (725), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 74/440 (16%), Positives = 172/440 (39%), Gaps = 36/440 (8%)

Query: 393 CIAASARLHTIQW-NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV 451
                  L  ++     +  A   +P         N         +     N  ++    
Sbjct: 209 TRPVKELLRGVRSVADGDFGARIALPVGGELGELLNGFNTMATQLEAYDEANIEELTAAQ 268

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
           ++  S++   +DG  +++ EG ++  N    +LF +    +  +     L  +    +  
Sbjct: 269 VKQQSLIATMADGALLLDPEGQVVLVNPTARRLFRWEGRKLEGQELLRLLPDSLTMELQE 328

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEK 568
               + S +      + ++      + L L +   +          ++T+ D++      
Sbjct: 329 PFDAVRSRERDSAEVRCSINEP--NRTLRLVLQAVRDGSGETLKGIAVTVQDLTR----- 381

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
                      + ++ +S F++ VSHE+RTPL  I  + E + +     L      E+  
Sbjct: 382 ---------EVELNAAQSRFISNVSHELRTPLFNIKSYVETLHD-MGDQLDEEMTREFLA 431

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
             +   + +  +VND+LD+S++ES ++   FEP  ++ A+ + +   +L A++K + +  
Sbjct: 432 TANAETDRLTRLVNDVLDLSRLESDRV-WSFEPTEVEAAMEQTLRTYKLNADDKGVSLDL 490

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE------------- 735
           +   ++PR+  +   + Q+  N++ NA+ F+ SG  + +      +              
Sbjct: 491 AVPPSLPRVRGNYDLLLQVFDNLVGNAVKFSTSGDMVQLRAYLWPDTCPIKADDASSPLP 550

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            + + V D+G G++  +  +  + F ++ N+      GTGLGL + + ++  +     + 
Sbjct: 551 RLRVEVADSGTGISEEDCRRVFERFYRVENAVHTEA-GTGLGLSIVRGILQKHGSDISMV 609

Query: 796 STPAKGTLIEIIFPLYDTSH 815
           S    GT      PL     
Sbjct: 610 SELGVGTTFWFDLPLEGADE 629


>gi|46578686|ref|YP_009494.1| sensory box histidine kinase [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120603748|ref|YP_968148.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           vulgaris DP4]
 gi|46448098|gb|AAS94753.1| sensory box histidine kinase [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120563977|gb|ABM29721.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           vulgaris DP4]
 gi|311232557|gb|ADP85411.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           vulgaris RCH1]
          Length = 756

 Score =  283 bits (725), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 79/598 (13%), Positives = 179/598 (29%), Gaps = 52/598 (8%)

Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291
           P    ++++ S           +       +         +     I   +   +     
Sbjct: 185 PLEGAESEILSFQRRVILLAAAVFLLGGGGIALLLDRFLTRPVGVLIEGTRRVAR--GEA 242

Query: 292 LQNNSKESFEYLSHRNHPSLSAYFD---------EGENLTPETVDKCPIPFFVYSH-GNL 341
           +  N+    + +            D            +   +  D+ P    V      L
Sbjct: 243 VNLNAVRQGDEIGELARAISRMSRDIVDKQEELNRQRDEYQQLFDQVPCTITVQDTSLRL 302

Query: 342 FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401
              N  F         +                    +      + R+  T +   +   
Sbjct: 303 LKYNREFRERFNPTPGEH----------CFKAYKGRTDKCPHCAVARTMETGLPHCSEES 352

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
               +   +  +        N     +    +  +    +  + ++    ++  +I    
Sbjct: 353 GYNADGTRAHWLVHT-TPVFNAEGAVVAAMEMCLDITARKELEERLRRSELKYHAIFNNI 411

Query: 462 SDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520
              + ++      I+  N     ++G+  E++  + F      +        L     L+
Sbjct: 412 PSAVFVLEEASLDIIDCNSTAEAVYGWKAEEVRGRNFLHLFAPDERERYASQLRAFTVLN 471

Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
             +  +            + + +   +        LT  DI++  + + K+  A K+A  
Sbjct: 472 RARHFK-----RDGTPFFVDIMLSPSEYNGRQVLLLTTSDITQRLEAEQKVIQAGKMAT- 525

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN--QRFGPLGNPRYIEYANYIDRSGNLVL 638
                 +    V+HE+  PLT I   S  +    ++  P+           +D   +   
Sbjct: 526 ----LGEMATGVAHELNQPLTVIKAASGFLLRKARKGEPVAPDVLSTMTAEMDAHVDRAS 581

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
            I+  + +  +    K ++  E VS++E +  A          + I I      + P ++
Sbjct: 582 RIIEHMREFGR----KSDIVLERVSVNEVLRSATEFFSRQMTVRGITIEWQLDASEPVVM 637

Query: 699 ADLRSVKQIALNILSNAIHFTPSGG-------QIIISTTHTSNEEVILRVRDTGVGMTNY 751
           A    ++Q+ +N+L NA                I + T  T   EV++ V D+G G+   
Sbjct: 638 AVANRLEQVVINLLLNARDAIEEHAAAHDARRVITLRTE-TDGREVVMEVCDSGPGIPRA 696

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             ++  +PF          G+GTGLGL ++  +V    G   +   P  G    +  P
Sbjct: 697 LQQRIFEPFFTTKK----VGKGTGLGLSISYGLVKDFGGSISVGDAPGGGARFTVRMP 750



 Score = 44.6 bits (104), Expect = 0.061,   Method: Composition-based stats.
 Identities = 30/246 (12%), Positives = 70/246 (28%), Gaps = 9/246 (3%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEG 154
           + + +       G  A ++ G        +   D        L+   T   +   +  +G
Sbjct: 425 IIDCNSTAEAVYGWKAEEVRGRNF---LHLFAPDERERYASQLRA-FTVLNRARHFKRDG 480

Query: 155 TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK--RLDKKFSHLHEIKK 212
           T  +V I L+  P     R+        I      +      GK   L +  + +     
Sbjct: 481 TPFFVDIMLS--PSEYNGRQVLLLTTSDITQRLEAEQKVIQAGKMATLGEMATGVAHELN 538

Query: 213 GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ 272
              +V K       +++        + +S++T       D        +      S    
Sbjct: 539 QPLTVIKAASGFLLRKARKGEPVAPDVLSTMTAEMDAHVDRASRIIEHMREFGRKSDIVL 598

Query: 273 EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP 332
           E   ++N    +  ++F         + E+    + P + A  +  E +    +      
Sbjct: 599 ERV-SVNEVLRSATEFFSRQMTVRGITIEWQLDASEPVVMAVANRLEQVVINLLLNARDA 657

Query: 333 FFVYSH 338
              ++ 
Sbjct: 658 IEEHAA 663


>gi|301061334|ref|ZP_07202116.1| PAS domain S-box protein [delta proteobacterium NaphS2]
 gi|300444653|gb|EFK08636.1| PAS domain S-box protein [delta proteobacterium NaphS2]
          Length = 633

 Score =  283 bits (725), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 74/377 (19%), Positives = 144/377 (38%), Gaps = 21/377 (5%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           R    ++      L +I++     I + N +G +   N     L G     I        
Sbjct: 266 RERTAELTRAKELLQTIIDNIPVMICLFNPDGNVRILNSHYRNLIGLDGRKIGDTDLAET 325

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
             Q  P++     +++          K     T   K L       +L   S       D
Sbjct: 326 -RQIDPTICREVWSQMKQGQRGW---KDFTIQTTYGKNLQTSWARVRLSDGS-VIGIGID 380

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           ISE K+ + +  H  +  ++ +    DF    SH+++ PL  I  F E++  +    +  
Sbjct: 381 ISERKRSEEQKEHYLEQLKRSNKELQDFAFVASHDLQEPLRKIQSFGELLVTEVHDSISA 440

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
               ++   +  +   +  +++ LL  S++ +      F  V+L EAV EA+  + +   
Sbjct: 441 E-GRDFLVRMQNAATRMRKLIDSLLAYSRVTTKTR--AFSQVNLVEAVEEALGNLAVLKE 497

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ-------IIISTTHTS 733
           EK+  +       +P +  D   + Q+  N++ NA+ F   G         + I    + 
Sbjct: 498 EKKASVEV---GELPTVEGDQVQMIQLFQNLIGNALKFHRKGVSPEIKIYALTIHGGRSD 554

Query: 734 NEEV-ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
             +V  + V+D G+G     L +   PF ++    +   EG G+GL + + +V+ + G  
Sbjct: 555 QADVYEIFVKDNGIGFDESYLSRIFTPFQRLHG--KSEYEGVGIGLAICRKIVERHGGHI 612

Query: 793 YIFSTPAKGTLIEIIFP 809
              S P  G +  +  P
Sbjct: 613 TATSNPGGGAVFIVTLP 629


>gi|172036101|ref|YP_001802602.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
           51142]
 gi|171697555|gb|ACB50536.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
           51142]
          Length = 1349

 Score =  283 bits (725), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 96/706 (13%), Positives = 208/706 (29%), Gaps = 93/706 (13%)

Query: 184 VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL 243
             +    ++ +    R     ++L          E        +     + + ++ +   
Sbjct: 224 ARLAAEASERKLAEARSQALIANLPGGAAFVVDRELRYLLAAGEALAIANFKPEDFIGHT 283

Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303
                  +     E              +   H               L NN+ + +  L
Sbjct: 284 IFEVLSSELTASYEPMYRKALAGEPFEHEHQAHD-----RWYISRGTPLYNNNGQVYAVL 338

Query: 304 SHRNHPSLSAYFDEGENLTPET----------VDKCPIPFFVYSHGNLFYANPSFLLLTK 353
                 +     +E      E           +     P  +           + +   K
Sbjct: 339 VVSYDITERKQAEEQLRRASEVDTFRVKLSDALRSLADPIDIEET-----VTRTAMTHFK 393

Query: 354 YKS---------VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
                          I        L     +   +    +                 T +
Sbjct: 394 ADRCYYCKIEDGKAIIGRDAFREGLPTVAGVYPLSNFVILQRIIETGHPFVVQNVYTTDK 453

Query: 405 WN-----------------------RENSLAMTFIPFEKANQFPENMPQNGIEPEDV--- 438
            +                        E    +  +     N     +       +     
Sbjct: 454 VDEDLRQLCIQLQVISYLDVPVIKNGEAVGVLCLVQSTPRNWTDLEVELAIETADRTWAA 513

Query: 439 -DTRINKRKMEIEVMQLCSILEATSDGIAII-----NREGIILSTNRAVSKLFGYPVEDI 492
            +    +  +     +  S+ E  +DG  I+     + +      N     +       +
Sbjct: 514 VERANAETALRKSEEKYRSLFENINDGFCIMKMLYDDHQ------NPVDCLILETSPSFV 567

Query: 493 LRKPFTV-------FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
                          ++ +  +       +++        E   + + + +   +++   
Sbjct: 568 THNKLIHAEDKTAKEVDPHLEAEWLENHNQVVVTGQPTQFE---IYNAQLDIWFNVKAFP 624

Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE------SSHKSDFLARVSHEIRTP 599
             LP    +++   +I++ KQ +       +  ++       +  K+ F   VSHE RTP
Sbjct: 625 HGLPDDDQFAVVFSNINDRKQAEANQIRLIQEQQRAESLAELNRTKTVFFNNVSHEFRTP 684

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           LT ++G  E    Q           E+     R+   +L +VN LLD S++E+ +M  ++
Sbjct: 685 LTLLLGPLEDAITQLESQEKPETVKEHLQLAHRNALRLLKLVNTLLDFSRVEAQRMEGNY 744

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719
           +P  L    ++  S+ +       +    +  +    I  D    ++I LN+LSNA  FT
Sbjct: 745 KPTDLAVYTADLASVFRSTLESAGLQFIVNCQSLSEPIWVDREMWEKIVLNLLSNAFKFT 804

Query: 720 PSGGQIIISTTHTSNEE---------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
            +G +I +S     ++           +L V+DTG+G+   EL    + F Q  ++Q   
Sbjct: 805 FAG-KIRVSLRGEEDKTNSSIETPKFAVLEVQDTGIGICPEELPHIFERFYQSKSNQGRS 863

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
            EG+G+GL L + +V  + G   + S   +GT   +  P      P
Sbjct: 864 YEGSGIGLSLVEELVKLHGGTVEVRSQLGQGTTFTVTLPTGTEHLP 909



 Score =  197 bits (502), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 54/245 (22%), Positives = 108/245 (44%), Gaps = 11/245 (4%)

Query: 567  EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
             + ++       E  +     F   VSH+++TPL  I  F E +  +  G         Y
Sbjct: 1098 LEAQVKTRTAQLEAINEELEAFSYSVSHDLQTPLRYISSFVERLHRKLEGNADASTLR-Y 1156

Query: 627  ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
             + ID++ +    +++DLL+ S+  S K  L    VS+ + V E  S ++     +  LI
Sbjct: 1157 LSIIDQAASQAHQMIDDLLEFSR--SSKTELVLTQVSMTQLVQEVRSQLKPEIGHR--LI 1212

Query: 687  RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ--IIISTTHTSNEEVILRVRDT 744
                   +P +  D + ++ +  N++SNA+ +T +  +  I I  ++T + E++  V D 
Sbjct: 1213 EWHIEP-LPEVQGDPKMLQLVWQNLMSNAVKYTCNCAKAMITIR-SNTDDSEIVFCVEDN 1270

Query: 745  GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
            G G      ++    F ++ +  Q +  GTG+GL   + ++  + G+ +      +G   
Sbjct: 1271 GAGFDMTYHDRLFSLFQRLHS--QEQFAGTGVGLANVRRIIHRHGGRVWAEGAVHQGAKF 1328

Query: 805  EIIFP 809
                P
Sbjct: 1329 YFSLP 1333



 Score = 54.6 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/160 (13%), Positives = 47/160 (29%), Gaps = 14/160 (8%)

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL-----CSILEATSDGI-AIINREGII 474
           A+     + Q     + +     +   E    +L      +++     G   +++RE   
Sbjct: 202 ADFTAVALLQYQQHTQVLLANKARLAAEASERKLAEARSQALIANLPGGAAFVVDRELRY 261

Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
           L        +  +  ED +       L     +       + L+ +              
Sbjct: 262 LLAAGEALAIANFKPEDFIGHTIFEVLSSELTASYEPMYRKALAGEP-----FEHEHQAH 316

Query: 535 EEKLLSLRIIIKKLPFSSCY--SLTMHDISEWKQEKNKLS 572
           +   +S R           Y   +  +DI+E KQ + +L 
Sbjct: 317 DRWYIS-RGTPLYNNNGQVYAVLVVSYDITERKQAEEQLR 355



 Score = 38.9 bits (89), Expect = 3.9,   Method: Composition-based stats.
 Identities = 10/132 (7%), Positives = 29/132 (21%), Gaps = 9/132 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D        + E            IG  + +V           +         +  +  
Sbjct: 255 VDRELRYLLAAGEALAIANFKPEDFIGHTIFEVLSSELTASYEPMYRKALAGEPFEHEHQ 314

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                             P+Y+ N +   +    + +            +R  +  +   
Sbjct: 315 AHDR-------WYISRGTPLYNNNGQV--YAVLVVSYDITERKQAEEQLRRASEVDTFRV 365

Query: 209 EIKKGHSSVEKE 220
           ++     S+   
Sbjct: 366 KLSDALRSLADP 377


>gi|149919726|ref|ZP_01908204.1| sensory box histidine kinase/response regulator [Plesiocystis
           pacifica SIR-1]
 gi|149819497|gb|EDM78927.1| sensory box histidine kinase/response regulator [Plesiocystis
           pacifica SIR-1]
          Length = 771

 Score =  283 bits (725), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 100/649 (15%), Positives = 205/649 (31%), Gaps = 69/649 (10%)

Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD 251
           DP A+ +            +    +            +    +   + V     Y     
Sbjct: 7   DPDAVRRADCADALSRRGHE--VVARGDLGLTEELPIASIVIVAGPHLVELCARYRRELR 64

Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS--HRNHP 309
                    L  +EE+     +DF  + ++           + +   + +      R  P
Sbjct: 65  ARWILGLGELSLAEEALAGGADDFLCVPMSPERLALRLTVAERSGAIAADVGGGSERADP 124

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYK-------SVDDIE 361
             S   +          D  P+P  +    G +   N     + + +        + ++ 
Sbjct: 125 LGSILPEISARQLRAIFDLVPLPALIAGRDGEIHQCNRELERMLRQRAGTVAGRRLAEVF 184

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
            A  ++ L    +       + + L          +A +  I                  
Sbjct: 185 DAREVAALTADIQTVSRVRERELSLRDRYGNDYRVAADVRWIPSGDG------------- 231

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
                     G+  +  + R+ +  +      L S+ EA+ DGI +   EG  +  N A 
Sbjct: 232 -------YIIGVFTDITERRLTEEALRQSEASLRSVFEASPDGIIVH-SEGRYVYVNPAA 283

Query: 482 SKLFGY-PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL- 539
               G    E ++       +  +  +     + ++      + ++ I    +  E  + 
Sbjct: 284 RAQLGIADSEALVGSSVYDRIHPSDVARARARVAKMFESGAPEPVQDIRFMRSDGEVFIG 343

Query: 540 SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
            +  I             + D  E +Q +++L  A ++A   +         V+HEI  P
Sbjct: 344 EVASIPATFMGVPAVISIIRDAGEQRQMQSQLYLADRLATVGTLAV-----GVAHEINNP 398

Query: 600 LTAIIGFSEVIKNQRFG---------------PLGNPRYIEYANYIDRSGNLVLDIVNDL 644
           L+ +IG   ++ ++                       R  E  +        V  I  DL
Sbjct: 399 LSWVIGNLGLLADELDEQVRMRDAPDHDPVAVAASRARIRELLSRTQEGTERVRRIARDL 458

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704
              ++ +SG      + V +   +   I +  L     R  +   +    P +L     +
Sbjct: 459 GRFARPDSG----DGQRVDVHALLDSTIEIADLQV-RHRARLLKHYQAVTP-VLGSEARL 512

Query: 705 KQIALNILSNAIHF----TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760
            Q+ LN+L NA       TP   ++ + T +  +  V + + DTG G+   +LE+   PF
Sbjct: 513 GQVFLNLLVNAAQAIAPGTPRNNRVDVYTRNLDDGRVEVEITDTGCGIPPDKLERIFDPF 572

Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
                     GEGTG+GL +   ++ A+ G+  + S    GT   +  P
Sbjct: 573 FTTKP----VGEGTGIGLAITHEIITAHGGELVVESQVDVGTRFFVRLP 617



 Score = 57.3 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 38/361 (10%), Positives = 83/361 (22%), Gaps = 23/361 (6%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
              G + + + EL + +   A  + G RL +V           +   ++  +    +   
Sbjct: 152 GRDGEIHQCNRELERMLRQRAGTVAGRRLAEV---FDAREVAALTADIQTVSRVRERELS 208

Query: 150 WPIE-GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                G +  V  D+  +P         G+   G+              ++ +     + 
Sbjct: 209 LRDRYGNDYRVAADVRWIPSGD------GYI-IGVFTDITERRLTEEALRQSEASLRSVF 261

Query: 209 EIKKGHSSVEKEK---YDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
           E       V  E    Y   + ++       +  V S      H  DV +         E
Sbjct: 262 EASPDGIIVHSEGRYVYVNPAARAQLGIADSEALVGSSVYDRIHPSDVARARARVAKMFE 321

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
             +    +D   +  +         ++          +S                L    
Sbjct: 322 SGAPEPVQDIRFMRSDGEVFIGEVASIPATFMGVPAVISIIRDAGEQRQMQSQLYLADRL 381

Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
                +   V         N     +     +   E+   +             A     
Sbjct: 382 ATVGTLAVGVAHE-----INNPLSWVIGNLGLLADELDEQVRMRDAPDHDPVAVAASRAR 436

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
           +          + R+  I  +          P     Q  +         E  D ++  R
Sbjct: 437 IRELLSRTQEGTERVRRIARDLGRF----ARPDSGDGQRVDVHALLDSTIEIADLQVRHR 492

Query: 446 K 446
            
Sbjct: 493 A 493


>gi|256828766|ref|YP_003157494.1| histidine kinase [Desulfomicrobium baculatum DSM 4028]
 gi|256577942|gb|ACU89078.1| histidine kinase [Desulfomicrobium baculatum DSM 4028]
          Length = 737

 Score =  283 bits (725), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 94/317 (29%), Positives = 147/317 (46%), Gaps = 27/317 (8%)

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH--DISEWKQEKNKLS 572
            I        LE       KE + L  R+           +L +   D +   Q   +L 
Sbjct: 2   SIRQKSSAHDLESELRACRKELRELKSRL------DERGLALNLQHEDAAGLTQLVAELD 55

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
            AK+ AE  S  KS FLA  SHEIRTP+ AIIG ++V+ N +  P            +  
Sbjct: 56  RAKQQAESASRMKSQFLANFSHEIRTPMNAIIGMTDVVLNTKVTP----EQHRALTIVKN 111

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
           +   +L+++N +LD+SKIE+G+  L   P  L   V   +S + L A EK + +      
Sbjct: 112 ASESLLNLINGVLDLSKIEAGQFALEVRPFDLRAEVERTVSTLGLTAAEKGLELICRLPP 171

Query: 693 NIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVG 747
           ++PR +  D   ++Q+ +N+L NA+ FTPSG  +  S            V  R+ DTG+G
Sbjct: 172 DMPRHMQGDPIRLRQVLMNLLGNALKFTPSG-HVCCSCQVEPKAGDDCVVRFRIEDTGIG 230

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE-- 805
           +   +L    + F Q+ +S      GTGLGL +++ +V    G  ++ STP +G+  E  
Sbjct: 231 IPADKLGTIFEDFTQVDSSSTRVYGGTGLGLSISRKLVQLMGGDIFVQSTPGQGSAFEFH 290

Query: 806 -----IIFPLYDTSHPH 817
                +  P  DT+H  
Sbjct: 291 ARLGQVSLP--DTAHAQ 305


>gi|149174474|ref|ZP_01853100.1| sensory box histidine kinase [Planctomyces maris DSM 8797]
 gi|148846584|gb|EDL60921.1| sensory box histidine kinase [Planctomyces maris DSM 8797]
          Length = 488

 Score =  283 bits (725), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 73/384 (19%), Positives = 157/384 (40%), Gaps = 20/384 (5%)

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF--GYPVEDILRK 495
              +     +  +   + S+L+    GI + + +  +  TN+A +     G   +    +
Sbjct: 107 TMLKARVNSLLKKEALVESVLDNLEIGILVFDAKQELEFTNQAANSFLLAGTDQKQTTSE 166

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555
                 +      +   L ++L+  + +   K      + E   +          S+ Y 
Sbjct: 167 SGLSLGKPVVEQTVIPELAKLLAKTIER---KEATFRRRTEFEFT------SNGISNQYR 217

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKS---DFLARVSHEIRTPLTAIIGFSEVIKN 612
               ++++  Q         +    E+  K+   +F++ V+HE++TP++ I  + E++ +
Sbjct: 218 AIATNLTDENQVALGTVVVVENIGVEADEKTQHAEFVSSVAHELKTPMSGIKAYIEMLID 277

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
               P       E   +I+   + +  +VN +L++++IESG + +      L++ +  A 
Sbjct: 278 GDCEP---EEADELYGFINDQIDRLTRLVNSMLNLARIESGVVEIKRHDHELNDILKTAA 334

Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
            ++   A EK I      ++    +  D   + Q  +N+LSNA+ +TP+G ++ + +   
Sbjct: 335 DVISPTATEKDIKFTAELSDMYLPVFVDKDMLGQAIINLLSNAVKYTPNGREVRLRSRME 394

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA-NMGK 791
                ++ VRDTG+G+    L      F ++         GTGLGL L   +V   + G 
Sbjct: 395 DT-TAVIEVRDTGLGIPENSLPHIFDRFYRV-PENNRSAAGTGLGLALVHFIVTNVHNGS 452

Query: 792 FYIFSTPAKGTLIEIIFPLYDTSH 815
             + S   +GT   +  PL     
Sbjct: 453 ISVQSQVDEGTCFTVTIPLGHKEQ 476


>gi|108759665|ref|YP_634982.1| sensory box histidine kinase [Myxococcus xanthus DK 1622]
 gi|108463545|gb|ABF88730.1| sensory box histidine kinase [Myxococcus xanthus DK 1622]
          Length = 631

 Score =  283 bits (725), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 100/638 (15%), Positives = 217/638 (34%), Gaps = 44/638 (6%)

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
           + F  L E     +++      + +             VS            +  +    
Sbjct: 10  EFFQALFEALDAPAAMCDPALRLVAVNDAFRRFCADQHVSVEEVARTLSGASVPADGASC 69

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
                  LP      +   +    +       + ++      +            +    
Sbjct: 70  DVELLPDLPGVVLTLSRRGDVVAVRARNEPELSRNRLVVAERALLEQARTEGVLLDLGRS 129

Query: 322 TPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
             E   +  +   V       +   SF +         +        L +          
Sbjct: 130 VAEAGGEEELVAAVARGVKELFPGRSFCIRITDSRTGGLTSLYAEGRLKEGAHEPLVLME 189

Query: 382 KPVMLYRSDRTCIAAS-----ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           + V     DR  +          +  +  +  + ++   +   +               +
Sbjct: 190 RAVEKTSLDRASLPVDRVAVLGEVPLLFQDSTHGVSAPLVASGQLFGAINMEYPADFVSD 249

Query: 437 DVDTRINKRKMEIE-----------------VMQLCSILEATSDGIAIINREGIILSTNR 479
                    ++  +                    L  +LE  +  I + NR+  ++  N+
Sbjct: 250 VPHDERVLLQLANQVAVAVKNAKLIDELTFVRKYLEDLLEKANALILVANRDKQVVVFNQ 309

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
           A+S L G+  E++L + F   + ++    +N  +   +  +   +    T   T     +
Sbjct: 310 ALSALTGFGKEEVLGRDFFWLIPESEHLRLNQLIAAAIRGEPVNSF--ETRLLTSSGAEV 367

Query: 540 SLRII----IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
            +       + +            DI+  K+ + ++ HA+K+A           A V HE
Sbjct: 368 RVSFATSSKLSQHGEVEGVIAIGQDITVVKELEKRIIHAEKLA-----SIGQLAASVVHE 422

Query: 596 IRTPLTAIIGFSEVIKNQ-RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           I  P+TA+  +++ +  + R  P  NP   E    I  S + +L    DL+  ++    +
Sbjct: 423 INNPMTAVATYADALLQRSRMTPGANPADQEKLRKILESSHRILRFTRDLVSYARPAQDR 482

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714
                E V L+  V  A+   +    + R+ I+  +   +P + A   ++ Q+ +N+++N
Sbjct: 483 ----PERVQLNAIVDMAVGFCEHVVAQARVTIQREY-IELPPLSAVRANLVQVFVNLITN 537

Query: 715 AIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           A H  P GG +I++T     ++ +++VRDTG G+    L++  +PF          G GT
Sbjct: 538 ACHAMPPGGSVILATG-RDGQDAVVKVRDTGTGIEPKHLQRIFEPFFTTKP----EGRGT 592

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
           GLGL + + +V+ + G+  + ST  +GT   +  PL  
Sbjct: 593 GLGLSICQGIVENHGGRLTVESTMGEGTTFIVRLPLQQ 630



 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 45/399 (11%), Positives = 101/399 (25%), Gaps = 44/399 (11%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKM--IGMRLCDVSDILH---------IDPNNHIGDLLK 138
           D    L  +++   +   +    +  +   L   S              D    +  L +
Sbjct: 27  DPALRLVAVNDAFRRFCADQHVSVEEVARTLSGASVPADGASCDVELLPDLPGVVLTLSR 86

Query: 139 RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
           R +           E       + +A   +  + R   G     +            L  
Sbjct: 87  RGDVVA---VRARNEPELSRNRLVVAERALLEQART-EGVL-LDLGRSVAEAGGEEELVA 141

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
            + +    L   +     +   +    +       L+       +    A +   L    
Sbjct: 142 AVARGVKELFPGRSFCIRITDSRTGGLTSLYAEGRLKEGAHEPLVLMERAVEKTSLDRAS 201

Query: 259 YP---LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
            P   +    E  L  Q+  H ++       Q FG +       F      +   L    
Sbjct: 202 LPVDRVAVLGEVPLLFQDSTHGVSAPLVASGQLFGAINMEYPADFVSDVPHDERVLLQLA 261

Query: 316 DE----------------GENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVD 358
           ++                      + ++K      V +    +   N +   LT +   +
Sbjct: 262 NQVAVAVKNAKLIDELTFVRKYLEDLLEKANALILVANRDKQVVVFNQALSALTGFGKEE 321

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
            +    G       P+       + +          +   RL T        + ++F   
Sbjct: 322 VL----GRDFFWLIPESEHLRLNQLIAAAIRGEPVNSFETRLLTSS---GAEVRVSFATS 374

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
            K +Q  E      I  +    +  ++++ I   +L SI
Sbjct: 375 SKLSQHGEVEGVIAIGQDITVVKELEKRI-IHAEKLASI 412



 Score = 45.0 bits (105), Expect = 0.047,   Method: Composition-based stats.
 Identities = 22/243 (9%), Positives = 64/243 (26%), Gaps = 12/243 (4%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMR-LCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +    +   ++ L    G    +++G      + +  H+  N  I   ++ +     +T 
Sbjct: 299 NRDKQVVVFNQALSALTGFGKEEVLGRDFFWLIPESEHLRLNQLIAAAIRGEPVNSFETR 358

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           L    G  + V    ++    S++ E  G    G      V  +        +K  S   
Sbjct: 359 LLTSSGAEVRVSFATSSK--LSQHGEVEGVIAIG--QDITVVKELEKRIIHAEKLASIGQ 414

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
                   +      + +                +T      D     +     +     
Sbjct: 415 LAASVVHEINNPMTAVATYADALLQRS------RMTPGANPADQEKLRKILE-SSHRILR 467

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
                  +        ++     + + +    E++  +   ++   + E   L+    + 
Sbjct: 468 FTRDLVSYARPAQDRPERVQLNAIVDMAVGFCEHVVAQARVTIQREYIELPPLSAVRANL 527

Query: 329 CPI 331
             +
Sbjct: 528 VQV 530


>gi|70730615|ref|YP_260356.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68344914|gb|AAY92520.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens
           Pf-5]
          Length = 1164

 Score =  283 bits (725), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 112/638 (17%), Positives = 229/638 (35%), Gaps = 40/638 (6%)

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY 246
              +       KRL+      +   +G   + ++  D           R+ +++    + 
Sbjct: 105 VADNPQQVDRLKRLEALQVEWNNFAQGMIDLRRQSGDYRGAVQAGRGKRLTDEIRKEYDD 164

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
               +  L+ E+   +T              + ++          L   SK   + L  +
Sbjct: 165 AVAMEQQLRLERNENVTRTTIFSVVLYLLFVVGISALLAYIGRRDLLALSKSYSDNLEAQ 224

Query: 307 NHPSLSAYFDE-GENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDI--EIA 363
              +          N   E  ++      +   G        F        V  +     
Sbjct: 225 EKSARRLEQQAWLRNGQTELAEQMLGQLSLNLLGRNIL---QFCAQYLGTPVAALYVREE 281

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
            G    + +   S     +   LY  +     A+     I+ +   +             
Sbjct: 282 HGGLRRVASYGFSREQEAQEQSLYSDEGLVGQAAQHKRLIRLDEVPADYFKVSSGLGDGS 341

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
               +     + + V+  I    +     +   +LE  +         G I         
Sbjct: 342 PRSVLVVPTRDDDRVNGVIELGFLRALSERDVELLELIA---------GNI--------- 383

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYL--TEILSLDLRQTLEKITLGSTKEEKL--- 538
             G  +E    +     +   T  +        E L     +  E+  +    +  L   
Sbjct: 384 --GTSIEAARYRQRLQEVLAETQQLNEELQVQQEELKTANEELEEQSRILKESQVHLETQ 441

Query: 539 -LSLRIIIKKLPFSSCYSLTMHDISEWK-----QEKNKLSHAKKIAEKESSHKSDFLARV 592
            + L    ++L   +       D  + K     + + +L    +  ++ S +KS+FLA +
Sbjct: 442 QVELEQTNEQLAEQAQILADQRDAMDRKNNELNEAQTQLEERAEELQRSSKYKSEFLANM 501

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHE+RTPL + +  ++++       L  P  +++A  I  +GN +L+++ND+LDISK+E+
Sbjct: 502 SHELRTPLNSSLILAKLLAENPQENLS-PEQVKFAESIYSAGNDLLNLINDILDISKVEA 560

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNI 711
           GK+ +  E  S+   V    SL Q    +K +  +       P++L  D + V+QI  N+
Sbjct: 561 GKLEVRPENASVPRLVDGLRSLFQPLTQDKGLEFKVELQPGAPQMLFTDRQRVEQILKNL 620

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           LSNA+ FT  G Q+ ++ +      +   V+D+G+G+   + +   + F Q   +   R 
Sbjct: 621 LSNAVKFTEKG-QVSLTVSAQPGAGIAFAVQDSGIGIAQDQQQSIFEAFRQADGTTNRRY 679

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            GTGLGL +++ +     G   + S P +G++  ++ P
Sbjct: 680 GGTGLGLSISRDLATLLGGSISVSSEPGRGSIFTLVLP 717


>gi|110638386|ref|YP_678595.1| PAS/PAC sensor signal transduction histidine kinase [Cytophaga
           hutchinsonii ATCC 33406]
 gi|110281067|gb|ABG59253.1| PAS/PAC sensor signal transduction histidine kinase [Cytophaga
           hutchinsonii ATCC 33406]
          Length = 577

 Score =  283 bits (725), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 84/369 (22%), Positives = 168/369 (45%), Gaps = 26/369 (7%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            K+ +E  ++ S++    D +  ++    IL  N    K+ G   E+++         +N
Sbjct: 220 AKLMMEKKRIESLINNMYDPVIGLDENLKILFVNEQAIKIIGISQEELIGHYTQELAIKN 279

Query: 505 TP-SVMNHYLTEILSLDLRQTLEKITLGSTKEE----KLLSLRIIIKKLPFSS--CYSLT 557
                +   L    +    + +      + KE     ++L + +            + + 
Sbjct: 280 DLVRTLVQDLMVAENTPSNKAIPIKIYSNNKEGYFEKEILHISVTPTGEQVKQLIGHVII 339

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
           + +I+E+K+                  K++F+A VSHE +TP+++I    ++++N++ G 
Sbjct: 340 LRNITEYKELDF--------------AKTNFIATVSHEFKTPISSIKMSLQLLENKQIGM 385

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
           L N         I    N +L I  +LL+++++ESG + L   P    E +  AI+  + 
Sbjct: 386 L-NEEQQNLLESIKEDANRLLKITGELLNMTQVESGNIQLSILPNDPKEILFYAINATKT 444

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737
            A +K I ++ +  +NIP +LAD      + +N+LSNAI ++     I ++     N +V
Sbjct: 445 QAEQKNISLKITAPDNIPHVLADNEKTAWVLINLLSNAIRYSYDNSTIQLAIASRDN-KV 503

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
            + V+DTG G+ +   +K    + ++P +   + EGTGLGL ++K  ++A  G   + S 
Sbjct: 504 TISVKDTGQGIASQYKDKIFNRYFRVPGT---KKEGTGLGLAISKEFIEAQGGSISVDSE 560

Query: 798 PAKGTLIEI 806
              G+   I
Sbjct: 561 FGSGSTFTI 569


>gi|293376810|ref|ZP_06623030.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Turicibacter sanguinis PC909]
 gi|292644562|gb|EFF62652.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Turicibacter sanguinis PC909]
          Length = 444

 Score =  283 bits (725), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 84/388 (21%), Positives = 158/388 (40%), Gaps = 33/388 (8%)

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVM-QLCSIL-EATSDGIAIINREGIILSTNRAVSK 483
           E     GI+   +   I +++       Q+ SI+  +  D + I+N  G +   N    K
Sbjct: 82  EQQEVLGIKYNKLMRFIQQQEYRNRRNMQIISIITNSIEDPMVILNISGELEYANNRFKK 141

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
                   +    F    +     V+   L  I     ++TLE        ++K      
Sbjct: 142 WVDLSA--LKTVSFNEVKQPELRKVLEDAL--ICETTRKKTLEI-------DQKFYISTA 190

Query: 544 IIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
                         +  HDI++ ++ +             +  K +F   VSHE++TP++
Sbjct: 191 NPIYNEHDDFNGSVIIFHDITDLQKYQ-------------NLQK-EFFGNVSHELKTPIS 236

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           AI G +E++ N            E+   I    N +  +V DLL I++ E  ++ +  E 
Sbjct: 237 AIKGCTEILLNG--AKNDPAALDEFLTMISDENNRMEQLVKDLLLINRYEFDQIKMKTEV 294

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
             L+E +++ I      A  K   I+   A    +I  D   +K   LN+L+NAIH++  
Sbjct: 295 FCLNELLTDCIVQPLNVAKLKHQKIKLE-APEQYQIEGDYIQLKHCFLNLLTNAIHYSGE 353

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
              I +       E   ++V D G+G+ + +L    + F ++  ++     GTGLGL + 
Sbjct: 354 NTTITVKAKAV-GEYYQIQVIDQGIGIPSADLPHIFERFYRVDRARSRHTGGTGLGLSIV 412

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +++++A+ G+  + S    GT   +  P
Sbjct: 413 QSIIEAHKGRIMVNSELNVGTTFTVSLP 440


>gi|171317408|ref|ZP_02906601.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria MEX-5]
 gi|171097425|gb|EDT42266.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria MEX-5]
          Length = 1242

 Score =  283 bits (725), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 104/621 (16%), Positives = 218/621 (35%), Gaps = 52/621 (8%)

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
           +       ++                        + + +  +       +D L   +  L
Sbjct: 212 RLAPLRERMQASIDGARNALAIAAPNLDAATAQGVTSALGRVAADILDGNDGLVALRARL 271

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
               E S+          + +          +     +   +  R     +  F      
Sbjct: 272 F--GEPSVTTHYHAKEDEVLRSLDALDVKLAEIADPFALRIVDARQRLDEAIAFRGRAAR 329

Query: 322 TPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
                          +      A        K+   +          L         +A 
Sbjct: 330 IASLSAAVNGGINALAFDLHMVAQSETAERLKHADAE----------LHKLAGALAGSAS 379

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
                  SD    A  A           ++         A +    +  + +  +    R
Sbjct: 380 ALRDALASDGQGNANRA----------QAVVALTTELAGAARRILTVKSDMLSNDVAMQR 429

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGI------ILSTNRAVSKLFGYPVEDILRK 495
           I    ++    +L +  E   D +  ++ +          +   A   +        +  
Sbjct: 430 IV-ADVDTTANRLAAYTEQ--DAV-RVDLQQRGIVSDVYRAVTSAFLMIVAVSFLLAIGG 485

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII-IKKLPFSSCY 554
                    + +     LT  ++               +    LSLR+    +   ++  
Sbjct: 486 FVISHRLGTSIARPLSSLTRTMA-------------RIRSGSDLSLRMSHKGRDEIAALI 532

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
           +     + E ++    L  A   AE  +S KSDFLAR+SHEIRTP+  ++G +E+++  R
Sbjct: 533 AGFNVMLDEIERRDVDLQAAIATAEAANSAKSDFLARMSHEIRTPMNGVLGMTELLQRTR 592

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                  +  ++ + + RSG  +L I++D+LD SKIE+GK+ L     +L + + + ++L
Sbjct: 593 LTS----KQRKFVDTVYRSGQTLLVIIDDILDFSKIEAGKLTLERIDFNLHQLLDDVVAL 648

Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
           ++  A  K + +    A+++P+ +  D   ++QI  N+L NAI FT  G  + +S +++ 
Sbjct: 649 LEPNARRKALELVYRRADSVPQRMRGDPVRLRQILTNLLGNAIKFTEHG-HVGLSASYSD 707

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
           +  ++  + D+G+G+      +  +PF Q  +S   +  GTGLGL +++ + +   G   
Sbjct: 708 DGRIVFTIADSGIGIPPDISAQLFRPFQQADSSTARKYGGTGLGLVISRQLAEMMGGTLT 767

Query: 794 IFSTPAKGTLIEIIFPLYDTS 814
           + S P KG++  +  P    S
Sbjct: 768 LDSAPGKGSVFTVTTPFEPAS 788


>gi|149927362|ref|ZP_01915617.1| Hpt sensor hybrid histidine kinase [Limnobacter sp. MED105]
 gi|149823854|gb|EDM83079.1| Hpt sensor hybrid histidine kinase [Limnobacter sp. MED105]
          Length = 418

 Score =  283 bits (725), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 77/282 (27%), Positives = 134/282 (47%), Gaps = 19/282 (6%)

Query: 543 IIIKKLPFSSCY--SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
           + +++   +          D+S+           K+ AE     KS+FLA +SHE+RTPL
Sbjct: 1   MTLQREAKAPGVSMYAVCLDVSDLVLA-------KEQAESADRAKSEFLATISHELRTPL 53

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
            AIIGFS++++ Q    L +P        I  S   +  I++D+L+ S+I++  + L   
Sbjct: 54  NAIIGFSKLLEEQ----LDDPELRGDVRNISSSATSLHLILSDVLEYSRIQANGLKLDPS 109

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFT 719
           P  LD  V +  SL +  A +K +          P  +  D   ++Q+  N++SNA+ FT
Sbjct: 110 PFDLDAMVRQVYSLNRNLALKKNLEFSLVNETEGPCFVHGDANRLRQVVQNLVSNALKFT 169

Query: 720 PSG-GQIIISTTHTSNE--EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
             G  ++ + T+  +    EV + V D+G+G++   L+K  + F Q       +  GTGL
Sbjct: 170 DIGYVKMRLMTSQPAQGRIEVFIEVVDSGIGISQPALQKLFQRFSQASREINRQYGGTGL 229

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEII--FPLYDTSHP 816
           GL + K +V+   G+  + S    G++  +    PL     P
Sbjct: 230 GLAICKGLVELMGGRIDVSSELGVGSVFTVSLNLPLASALSP 271


>gi|301064573|ref|ZP_07204969.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta
           proteobacterium NaphS2]
 gi|300441321|gb|EFK05690.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta
           proteobacterium NaphS2]
          Length = 485

 Score =  283 bits (725), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 68/266 (25%), Positives = 125/266 (46%), Gaps = 7/266 (2%)

Query: 551 SSCYSLTMHDIS---EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
           +     T+  IS   E K+  +  +   +  ++    K DF++ VSHE+RTPLT I   +
Sbjct: 222 ARGKFATIQPISSPPEIKELADHFNVMSERLQELDEMKIDFISHVSHELRTPLTVIKEAT 281

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
            ++ +  +         E      +  + ++D VN +LD+S++E+  M   F P  L   
Sbjct: 282 GMLLDGTY-ADSRESQQELLTITQQECDRLIDSVNRILDLSRMEAKMMEYVFVPCQLSPL 340

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727
           + E +  +   A  + I ++    +++P +  D   +KQ+  N++SNA+ F+  G  + +
Sbjct: 341 IQETVLKLAPIAIREEIRLQLKLQDHLPLVKMDEARIKQVLENLISNALKFSSKGDTVSV 400

Query: 728 STTHTSNEE--VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
            T    N +  + + V DTG G+    LE+    F +I    +    GTGLGL +AK +V
Sbjct: 401 RTAVQRNGQDCIQISVADTGTGIQKENLERIFDRFKRIERG-KETARGTGLGLSIAKHIV 459

Query: 786 DANMGKFYIFSTPAKGTLIEIIFPLY 811
             + G  +  S P +G+      P+ 
Sbjct: 460 TEHGGNIWAESAPGRGSTFFFTLPVS 485


>gi|254555782|ref|YP_003062199.1| histidine protein kinase; sensor protein [Lactobacillus plantarum
           JDM1]
 gi|254044709|gb|ACT61502.1| histidine protein kinase; sensor protein [Lactobacillus plantarum
           JDM1]
          Length = 467

 Score =  283 bits (725), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 78/402 (19%), Positives = 167/402 (41%), Gaps = 24/402 (5%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
                  P       +   +   +   R+ E++  +L  I+     G+ +I+    +  +
Sbjct: 88  ILLPQSDPLYSLAQAVNQLESYQKSQTRRAELQEKELMMIMRYLPVGVMVIDHRRQVQLS 147

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
           N A+S+L    V  +               ++   +T   +     TL         E  
Sbjct: 148 NPAMSELLQVSVNTVAHIYTKDIQLYALTKLIEDTITSGKNQRATITLTPAPNTQVVEAS 207

Query: 538 LLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
            + ++    +        L ++DI+E    +                + DF++  SHE++
Sbjct: 208 TVYIQGNRSQFQ----IVLMLYDITEVYMIE--------------QMQDDFVSNASHELK 249

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN- 656
           TP+TAI GF+E + +            ++ + I      ++D++ D+L +S+I +     
Sbjct: 250 TPITAISGFTETLLSGAKD--DPDTLDQFLHIIADESQRLIDLIQDVLSLSRIRAQNTTM 307

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716
           L   P+++   + + +++VQ     + + I      ++  I +D + + QI  N+L+NAI
Sbjct: 308 LTLVPLAVRPLIEQELAVVQQAIERQHLTINNQVDADL-MITSDSQKLSQIIKNLLTNAI 366

Query: 717 HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTG 775
            +    G + I+T  +      L V+DTG+G++  + ++  + F +   S+  +   GTG
Sbjct: 367 KYNRPHGSVTIATMVSHQTW-SLIVKDTGIGISADDQQRIFERFYRASPSRSQQLVSGTG 425

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
           LGL + + +V+A  G   + S    GT + +  PL  ++   
Sbjct: 426 LGLAIVQELVNAMHGTIDVVSQRGVGTTMTVTLPLAASASEQ 467


>gi|227329138|ref|ZP_03833162.1| hybrid sensory histidine kinase BarA [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 931

 Score =  283 bits (725), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 94/345 (27%), Positives = 155/345 (44%), Gaps = 19/345 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +F Y +   +  P    +       ++      L   +   +             +++ +
Sbjct: 193 IFAYRLMRDVTTPIRNMV-----DTVDRIRRGQLDSRVEGYMLGELDMLKNGINSMAMSL 247

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                          +D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 248 TAYHEEMQQNIDQATYDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTP 307

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+     Q      N    +Y   I+RS N +L+I+ND+LD SK+E+GK+ L  
Sbjct: 308 LNGVIGFT----RQTLKTPLNTTQTDYLLTIERSANNLLNIINDVLDFSKLEAGKLVLED 363

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P SL   + + + L+   A+EK + +  S  N++P   + D   ++QI  N+L NAI F
Sbjct: 364 IPFSLHNTLDDVVMLLAHTAHEKGLELTLSIQNDVPEQFVGDPLRIQQIITNLLGNAIKF 423

Query: 719 TPSGGQ-IIISTTHTSNEEVILRV--RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T  G   I +        +V L V  RDTG+G+   +  +  + F Q   S   R  GTG
Sbjct: 424 TEQGNIDIRVEKRRQELHQVQLEVQIRDTGIGIAELQQSQLFQAFRQADTSISRRHGGTG 483

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTL--IEIIFPLYDTSHPHD 818
           LGL + + +V    G     S  +KG+     I  PL   + P +
Sbjct: 484 LGLVITQRLVKEMGGDISFQSELSKGSTFWFHITLPLNPHAIPTE 528


>gi|150395255|ref|YP_001325722.1| integral membrane sensor hybrid histidine kinase [Sinorhizobium
           medicae WSM419]
 gi|150026770|gb|ABR58887.1| integral membrane sensor hybrid histidine kinase [Sinorhizobium
           medicae WSM419]
          Length = 739

 Score =  283 bits (725), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 110/447 (24%), Positives = 188/447 (42%), Gaps = 23/447 (5%)

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
           G + L      +D +A  PV         IAA+  L  +  +      ++ I        
Sbjct: 25  GAALLWQRRFWADPSAGAPVARLAYALAGIAAAMLLLAVGASAG-LHLLSAIIAAGGIAG 83

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
              +     E         +   +     L SI +A  D + + + +G ++  N A  +L
Sbjct: 84  AFLLLSGRDEASGSLRAGARETAQDAAAPLASIHDAMGDLVIVRDPDGKVMQANVAFHEL 143

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
            G      L         +  P    +++    S   R       L      +L+   I 
Sbjct: 144 CGCADARGLTCAELGLRFEPKPDPYRYFVHICTSAGTRLYDWHDVLVRDAHGRLMRHSIA 203

Query: 545 IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
                          D++E     ++   A++ AE+ S  KS  LA VSHEIRTPL+ I+
Sbjct: 204 --------------RDVTEDMLAASQREEARQRAEEASRAKSRLLATVSHEIRTPLSGIL 249

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           G S ++   R     +     Y   + +SG+ ++ +V DL+D S + +G+  L      L
Sbjct: 250 GMSRLLAETRL----SDEQKNYLVGMQQSGHTLVQLVEDLIDFSSLAAGRFQLRPSQQDL 305

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG 723
            + V   + ++   A+EK I I  + A  IP  +L D   ++Q+  N++ NA+ FT  GG
Sbjct: 306 RQTVENVVEMLSPRAHEKGIEIGATVAIEIPERMLFDAARLRQVLFNVVGNAVKFTEKGG 365

Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
            +I+S     N  + +RV D+G GM+   L +  + F Q    +  R +GTGLGL +++ 
Sbjct: 366 -VIVSVDIE-NGSLRIRVDDSGPGMSADALARVFEEFEQA-GDEAQRAKGTGLGLAISRR 422

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFPL 810
           +++A  G     S   KG+  EI FP+
Sbjct: 423 IMEAFGGSLTATSVSGKGSRFEIRFPM 449


>gi|90418498|ref|ZP_01226410.1| putative two-component signal transduction histidine kinase
           [Aurantimonas manganoxydans SI85-9A1]
 gi|90338170|gb|EAS51821.1| putative two-component signal transduction histidine kinase
           [Aurantimonas manganoxydans SI85-9A1]
          Length = 698

 Score =  283 bits (725), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 89/415 (21%), Positives = 167/415 (40%), Gaps = 21/415 (5%)

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470
           L ++ +                +    +  +  +R++        +++    D + + + 
Sbjct: 53  LRLSLLARTGVPLLVLTFISAVLIAVVLQWQARRRELSATNAIYRAMVRELPDCLNVKDV 112

Query: 471 EGIILSTNRAVSKLFGYP-VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
           +G  ++ N A + +       D+  K    F      +      T +L       ++++T
Sbjct: 113 DGRFIAANPATAAMMRVRGAADLTGKTDFDFYPPELATRFRADETAMLESGKAIRIDQMT 172

Query: 530 LGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
           +     E  L+      +              D++E K+               ++ K++
Sbjct: 173 VFPDDSEGWLNTLKAPFRDHTGRIVGIITYNRDVTEQKRN--------------AAVKNE 218

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           F+A +SHE+RTPLT+I G   +I     G L  P+          +   ++ ++ND+LD+
Sbjct: 219 FIATISHELRTPLTSIRGSLGLITAGVTGELP-PKAAHMVEIAHNNSERLVLLINDILDL 277

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707
            K+ESGKM    +   L   + +AIS    Y  E+R+ IR            D   + Q+
Sbjct: 278 EKLESGKMPFDLQHTRLRPLLDQAISSSSSYMPERRVTIRLVDEAPDIEAKTDPNRLHQV 337

Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
             NILSNAI F+P+GG + ++     ++ V + V D G G+     ++    F Q   + 
Sbjct: 338 FANILSNAIKFSPTGGTVTVTIARLGDDWVRMSVSDEGQGIPESFRKRIFGKFEQADATD 397

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP--LYDTSHPHDCI 820
             +  GTGLGL +AK +V+   G+     T   GT   +  P  +   + P   I
Sbjct: 398 NRQKGGTGLGLSIAKTIVEKLGGRIGFD-TGDTGTTFHVDLPEQVARQNDPAGVI 451



 Score = 38.1 bits (87), Expect = 6.4,   Method: Composition-based stats.
 Identities = 42/455 (9%), Positives = 94/455 (20%), Gaps = 47/455 (10%)

Query: 90  DAHGYLKEISEELPKTIGNY-AFKMIGMRLCDVSDILHID--PNNHIGDLLKRQNTWYGK 146
           D  G     +      +    A  + G    D            +    L   +     +
Sbjct: 111 DVDGRFIAANPATAAMMRVRGAADLTGKTDFDFYPPELATRFRADETAMLESGKAIRIDQ 170

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
            T++P +       ++    P         G     I +   V    R    + +   + 
Sbjct: 171 MTVFPDDSEG---WLNTLKAPFRDHTGRIVGI----ITYNRDVTEQKRNAAVKNEFIATI 223

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
            HE++   +S+      I +  +     +  + V       AH +          +   E
Sbjct: 224 SHELRTPLTSIRGSLGLITAGVTGELPPKAAHMV-----EIAHNNSERLVLLINDILDLE 278

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
                +  F   +           +  ++              +         N   +  
Sbjct: 279 KLESGKMPFDLQHTRLRPLLDQAISSSSSYMPERRVTIRLVDEAPDIEAKTDPNRLHQVF 338

Query: 327 DK-CPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
                    F  + G +              SV D     G+                  
Sbjct: 339 ANILSNAIKFSPTGGTVTVTIARLGDDWVRMSVSDEGQ--GIPESFRKRIFGKFEQADAT 396

Query: 385 MLYRSDRTCIAASARLHTIQWNRENS--------LAMTFIPFEKANQFPENMPQNGIEPE 436
              +   T +  S     ++                      E+  +  +        P 
Sbjct: 397 DNRQKGGTGLGLSIAKTIVEKLGGRIGFDTGDTGTTFHVDLPEQVARQNDPAGVIDHRPR 456

Query: 437 DVDTRINKRKMEIEVMQL----------------CSILEATSDGIAIINREGIILSTNRA 480
            +     +   EI    L                 ++L         ++    I     +
Sbjct: 457 VLVCEDERDIAEIVAAHLDAQGFASDIAPGIATARTLLSNFEYVAVTLD----IRLAGDS 512

Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
             +LF         +   V +           L  
Sbjct: 513 GIELFHEIRRSPRNRDLPVLVISAVADETREALNG 547


>gi|226310932|ref|YP_002770826.1| sporulation kinase [Brevibacillus brevis NBRC 100599]
 gi|226093880|dbj|BAH42322.1| sporulation kinase [Brevibacillus brevis NBRC 100599]
          Length = 470

 Score =  283 bits (725), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 96/507 (18%), Positives = 195/507 (38%), Gaps = 57/507 (11%)

Query: 316 DEGENLTPETVDKC-PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
               +L     D+     F +   G +F  NP+  +LT Y   +    +     + +  +
Sbjct: 9   WRSGHLYRSFFDQMIQATFLLDQFGRVFKGNPACQVLTGYSVEEWEGASFWKLAISEEQE 68

Query: 375 LSDNNAIKPV---------MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
           +        +              D T I             E   ++ +    +    P
Sbjct: 69  MVRLQTQFAMNGDPRPFFTAFRHKDGTSIPVHITYGAF---GEEGTSIGYYAMVQRLPAP 125

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
                   +                      +L+ + +G  I  R G +   N+A  +L 
Sbjct: 126 FGDSYGSKQCR--------------------VLDISGEGAFIF-RAGELQYVNQAGMQLV 164

Query: 486 GYPV-EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
           G    +++L  PF  F        +   +  +   +    +E   +        + +   
Sbjct: 165 GASGLDELLWYPFQSFFHPRDVPKIKGLIRTLEEGETASPIEVELIRLDGSRTEVEVCGT 224

Query: 545 IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
              +       + + DI+E K+ +  L +++K+A           A ++HEIR PLT++ 
Sbjct: 225 SMTMLDKLSMYILIRDITERKRAQEFLQNSEKLA-----LVGQLAAGIAHEIRNPLTSLK 279

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           GF ++++          R  EY + +      +  IV++LL ++K  +      FE   L
Sbjct: 280 GFVQLMQKDGM------RKPEYFSIMSSELARIEMIVSELLVLAKPHTA----VFEARDL 329

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724
              ++  ++L++  A  K+++I+  F + +P I  D   +KQ  +N L N I  T   G+
Sbjct: 330 SNLITHVVTLLETEAILKKVMIQVVFESEVPLIHCDENQLKQAFINFLKNGIEATAGNGE 389

Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
           I+I      +  V++R  D GVG+  +++ +  + F     +      GTGLGL +++ +
Sbjct: 390 IVIRLRCEDD-RVVIRFEDNGVGIPAHQMARLGEAFFTTKET------GTGLGLMVSRKI 442

Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPLY 811
           ++ + G   + STP  GT +E+  P+ 
Sbjct: 443 IENHRGTLRLISTPGNGTAVEVCLPIS 469



 Score = 44.2 bits (103), Expect = 0.089,   Method: Composition-based stats.
 Identities = 26/249 (10%), Positives = 66/249 (26%), Gaps = 6/249 (2%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
           T+ +D  G + + +       G    +  G     ++     +            +    
Sbjct: 26  TFLLDQFGRVFKGNPACQVLTGYSVEEWEGASFWKLAISEEQEMVRLQTQFAMNGDPRPF 85

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
            T     +GT++ V I   A   +       G+  + +V          + G +  +   
Sbjct: 86  FTAFRHKDGTSIPVHITYGA---FGEEGTSIGY--YAMVQRLPA-PFGDSYGSKQCRVLD 139

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
              E      + E +  +    Q        +        ++  +D          L   
Sbjct: 140 ISGEGAFIFRAGELQYVNQAGMQLVGASGLDELLWYPFQSFFHPRDVPKIKGLIRTLEEG 199

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
           E++ P + +   ++ ++   +    ++    K S   L         A      +     
Sbjct: 200 ETASPIEVELIRLDGSRTEVEVCGTSMTMLDKLSMYILIRDITERKRAQEFLQNSEKLAL 259

Query: 326 VDKCPIPFF 334
           V +      
Sbjct: 260 VGQLAAGIA 268


>gi|119489748|ref|ZP_01622506.1| two-component sensor histidine kinase [Lyngbya sp. PCC 8106]
 gi|119454322|gb|EAW35472.1| two-component sensor histidine kinase [Lyngbya sp. PCC 8106]
          Length = 1012

 Score =  283 bits (725), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 76/264 (28%), Positives = 121/264 (45%), Gaps = 7/264 (2%)

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
                    ++ +  L  A    +     K +FLA  SHE+RTPL  IIG +E + +   
Sbjct: 329 AVERATIALREREEDLERANTDLKHLDQLKDEFLANTSHELRTPLNGIIGIAESLIDGAT 388

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
           G L +         I  SG  +  +VND+LD SKI    ++L  +PV L       I+L 
Sbjct: 389 GQLSDLTQSN-LAMIVSSGRRLSSLVNDVLDFSKIRYSNIDLQLKPVDLYTITDLVITLS 447

Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN- 734
           Q    +K + +  S     P + AD   ++QI  N++ NAI FT +G Q+ I      N 
Sbjct: 448 QPLVGKKNLQLINSINPESPAVQADENRLQQILHNLVGNAIKFTAAG-QVEILAKKVDNL 506

Query: 735 ----EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
               E + + + DTG+G++  + E+  + F Q   +      GTGLGL + K +V+   G
Sbjct: 507 ESDQEFLKIVIADTGIGISEDKFEQIFESFEQASGTTAREYGGTGLGLAITKQLVELQGG 566

Query: 791 KFYIFSTPAKGTLIEIIFPLYDTS 814
           K  +FS   +G+      P+   +
Sbjct: 567 KIEVFSRLGEGSQFSFTLPIATEN 590


>gi|225567986|ref|ZP_03777011.1| hypothetical protein CLOHYLEM_04059 [Clostridium hylemonae DSM
           15053]
 gi|225163274|gb|EEG75893.1| hypothetical protein CLOHYLEM_04059 [Clostridium hylemonae DSM
           15053]
          Length = 1194

 Score =  283 bits (725), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 116/757 (15%), Positives = 239/757 (31%), Gaps = 71/757 (9%)

Query: 95  LKEISEELPKTIGNYAFK----MIGMRLCDVSDILHID-PNNHIGDLLKRQNTWYGKTTL 149
              I+  +   +G    +     I   + +       D  +  +   L++   +     +
Sbjct: 170 FYFINHNMLDYLGYENEEEFCLDIDGMIANCMHPDDRDMVDTEVAAQLEKGGEYAVDYRM 229

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
              +G+  Y+ +  +     + +   +      +          +     L   ++++  
Sbjct: 230 KKKDGS--YIWVHDSGRKTVAEDGRDAIAS---VCVDITAQKTAQEEVLHL---YNNIPG 281

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE---YYAHKDDVLKTEKYPLLTSEE 266
                   +       +          + + +++        H DD+           + 
Sbjct: 282 GVFRCRFDDDLSVIGANDGLYEFLGYGREEFAAMGNKMSAVIHPDDLGPISGNLTEQLKH 341

Query: 267 S-SLPEQEDFHTINLNQYTKK---QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
           S ++  +      +          Q F             + +     L    +E     
Sbjct: 342 SNAIHYENRVICKDGTVRWVSVKAQLFAEQNGERHFYCVLVDNTKEKRLQERANELYEQE 401

Query: 323 PETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
                +       +  G +              +V            ++    S  +   
Sbjct: 402 MTYFAELSSRDGAF-QGRINVTQNKLENYISTANVAVSRAGDSYEQTVEHLACSAVDPHY 460

Query: 383 PVMLYRSDRTCIAASARL---------HTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
              L  + +                     +     +           N    ++     
Sbjct: 461 GQKLRETLKRDKVLEDYAAGKADYNFSFLCRRKDGTAFWSGSNFHTCLNPETGDVMMFFY 520

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
             +  + R+ + ++  ++ +L        D I  I+    I +   +  +L G+  E   
Sbjct: 521 TQDITEQRL-QDQLLKKITKLDY------DLITEID----ITT---STYRLVGFSDEWKQ 566

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI---------------TLGSTKEEKL 538
                   +Q    +    + E       + L+                    +      
Sbjct: 567 AVLQQGDFQQEIRRIAESRMNEEARKVFLEKLDFEYMKSCLARQNSYTFILELTEDRGTR 626

Query: 539 LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK----LSHAKKIAEKESSHKSDFLARVSH 594
           +    +           +T  D+++  +++ +    L+ A   AE+ +  KSDFL+R+SH
Sbjct: 627 VKRFQVFYINEELGRVCMTWSDVTDVVRQEQRQKEELAAALVAAEQANVAKSDFLSRMSH 686

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           EIRTP+ AIIG S +          + +  +  + I  S   +L ++ND+LD+S+IESGK
Sbjct: 687 EIRTPMNAIIGMSTIAAQSIG---DDEQIEDCISKIGISSRFLLSLINDILDMSRIESGK 743

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILS 713
           M L  E +  +E ++   S+    A  K +         +      D   ++Q+ +NILS
Sbjct: 744 MLLKSERIPTEEFLNGINSICYSQAAVKNVDYECIIDPVLADYYVGDAMKLQQVLINILS 803

Query: 714 NAIHFTPSGGQIIISTTHTS----NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
           NAI FT  GG++  S         +  +   V DTGVGM    L    +PF Q       
Sbjct: 804 NAIKFTGEGGKVTFSAAERRKTKTDAVLRFIVNDTGVGMNEDFLPHIFEPFSQESTGTTA 863

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
              GTGLGL ++K +VD   GK  + S    GT   +
Sbjct: 864 LYGGTGLGLAISKNIVDLMDGKITVRSIKGIGTEFTV 900



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/303 (7%), Positives = 89/303 (29%), Gaps = 22/303 (7%)

Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLL 351
           +   S+       +     +     + + L  ++V    +  ++      ++ N + L  
Sbjct: 121 VAEPSRNQAGGEHYPQTLVVEHIAQQRQKLLNDSVPGGMMGGYIEEGFPFYFINHNMLDY 180

Query: 352 TKYKSVDDI-EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
             Y++ ++      G+      P   D    +            A   R+        + 
Sbjct: 181 LGYENEEEFCLDIDGMIANCMHPDDRDMVDTEVAAQLEK-GGEYAVDYRMK---KKDGSY 236

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI--I 468
           + +     +   +   +     +  +    +  + ++         +      G+     
Sbjct: 237 IWVHDSGRKTVAEDGRDA-IASVCVDITAQKTAQEEVLH-------LYNNIPGGVFRCRF 288

Query: 469 NREGIILSTNRAVSKLFGYPVED--ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
           + +  ++  N  + +  GY  E+   +    +  +  +    ++  LTE L       + 
Sbjct: 289 DDDLSVIGANDGLYEFLGYGREEFAAMGNKMSAVIHPDDLGPISGNLTEQLKHSNA--IH 346

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSC---YSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
                  K+  +  + +  +     +    +   + D ++ K+ + + +   +      +
Sbjct: 347 YENRVICKDGTVRWVSVKAQLFAEQNGERHFYCVLVDNTKEKRLQERANELYEQEMTYFA 406

Query: 584 HKS 586
             S
Sbjct: 407 ELS 409



 Score = 41.6 bits (96), Expect = 0.55,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 66/181 (36%), Gaps = 15/181 (8%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFK--MIGMRLCDVSDILHIDP-NNHIGDLLKRQN 141
           F    D    +   ++ L + +G    +   +G ++  V     + P + ++ + LK  N
Sbjct: 284 FRCRFDDDLSVIGANDGLYEFLGYGREEFAAMGNKMSAVIHPDDLGPISGNLTEQLKHSN 343

Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
             + +  +   +GT  +V +        +  R F     + ++  N          KRL 
Sbjct: 344 AIHYENRVICKDGTVRWVSVKAQLFAEQNGERHF-----YCVLVDNT-------KEKRLQ 391

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
           ++ + L+E +  + +    +   F  +      +++N +S+     +   D  +     L
Sbjct: 392 ERANELYEQEMTYFAELSSRDGAFQGRINVTQNKLENYISTANVAVSRAGDSYEQTVEHL 451

Query: 262 L 262
            
Sbjct: 452 A 452


>gi|153948998|ref|YP_001401784.1| sensory box histidine kinase [Yersinia pseudotuberculosis IP 31758]
 gi|152960493|gb|ABS47954.1| sensory box histidine kinase [Yersinia pseudotuberculosis IP 31758]
          Length = 604

 Score =  283 bits (725), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 83/376 (22%), Positives = 163/376 (43%), Gaps = 28/376 (7%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           ++++R+++        I+     G+   N E +I   N    K+FG   + +  +     
Sbjct: 234 QLSRRQLQDSKAISTEIINNLPIGLITTNEEQLISVVNHTAEKIFGISKDILTGQNIHQA 293

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL---- 556
           L      ++        S   +  +E       KE  ++ L I +  +   +   L    
Sbjct: 294 LPPEWNLLVK------KSQRHQPVIEHEIDYKLKEGLIIPLSISVANIVNHNGSFLGNIF 347

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
              D+ E +Q + ++   +K+A        +  A V+HEIR PL++I GF++    +   
Sbjct: 348 IFRDMREVRQLQEEIRRKEKLA-----AIGNLAAGVAHEIRNPLSSIKGFAKYF--EGHS 400

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
           P G+    E A  + +  + +   V +LL + +      +L  + V+++E ++ ++ L++
Sbjct: 401 PQGSEEQ-ELAKVMIKEVDRLNRAVTELLGLVRPS----DLRIQLVNINEIIAHSLHLIR 455

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
             A+ K+I I+     N+PR+  D     Q  LN+  NAI      G + I+       +
Sbjct: 456 QDADSKKITIQFISNENLPRVEIDPDRFTQALLNLYLNAIQAMGRAGALEIALALVEESK 515

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           + + V DTG G+   +LE    P+     S      GTGLGL + + +++ + G+  + S
Sbjct: 516 LRISVIDTGKGIRAEDLENIFNPYFTTKAS------GTGLGLAIVQKVIEEHQGRITVTS 569

Query: 797 TPAKGTLIEIIFPLYD 812
            P  GT  ++  PL  
Sbjct: 570 HPQSGTRFDMTIPLVQ 585



 Score = 37.7 bits (86), Expect = 7.6,   Method: Composition-based stats.
 Identities = 31/257 (12%), Positives = 63/257 (24%), Gaps = 11/257 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            +    +  ++    K  G     + G  +            N +    +R         
Sbjct: 261 TNEEQLISVVNHTAEKIFGISKDILTGQNIHQALPPEW----NLLVKKSQRHQPVIEHEI 316

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
            + ++   L +P+ ++   I + N  F G     I    R     +   +R +K  +  +
Sbjct: 317 DYKLK-EGLIIPLSISVANIVNHNGSFLG--NIFIFRDMREVRQLQEEIRRKEKLAAIGN 373

Query: 209 EIKKGHSSVEKEKYDIFSQQSP-PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
                   +      I         H    ++   L +    + D L      LL     
Sbjct: 374 LAAGVAHEIRNPLSSIKGFAKYFEGHSPQGSEEQELAKVMIKEVDRLNRAVTELL---GL 430

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
             P       +N+N+          Q+   +        N        D           
Sbjct: 431 VRPSDLRIQLVNINEIIAHSLHLIRQDADSKKITIQFISNENLPRVEIDPDRFTQALLNL 490

Query: 328 KCPIPFFVYSHGNLFYA 344
                  +   G L  A
Sbjct: 491 YLNAIQAMGRAGALEIA 507


>gi|332664922|ref|YP_004447710.1| adenylate/guanylate cyclase [Haliscomenobacter hydrossis DSM 1100]
 gi|332333736|gb|AEE50837.1| adenylate/guanylate cyclase [Haliscomenobacter hydrossis DSM 1100]
          Length = 1603

 Score =  283 bits (724), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 69/273 (25%), Positives = 120/273 (43%), Gaps = 10/273 (3%)

Query: 536  EKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
                  R+  ++            ++ + +++  K     +  ++    K  FLA  SHE
Sbjct: 859  GMFYRWRMTTQRQNLQQRE----RELQQEREQLEKERRMNERLQQVDKLKDQFLANTSHE 914

Query: 596  IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
            +RTPL  IIG SE +         +P        +  SG  +  +VND+LD SK+++  +
Sbjct: 915  LRTPLQGIIGLSEALLEDEL----DPERKANLTMVVSSGKRLNSLVNDILDFSKLKNADI 970

Query: 656  NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715
             L   P+SL       +  +      K I +  S + + P   AD   ++QI  N+L NA
Sbjct: 971  ELDLRPISLHSMADVVLKNISPLVAGKSIELLNSVSVDFPAASADENRLQQILYNLLGNA 1030

Query: 716  IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
            + FT SG  I I      + ++++ V DTG G+   + +   + F Q   S      GTG
Sbjct: 1031 VKFTESG-YIKID-ALERDNDLVVCVEDTGPGIPPDKRDAIFQEFTQGDASTTRAFSGTG 1088

Query: 776  LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            LGL ++K +V+ + G  ++ S   +G+      
Sbjct: 1089 LGLSISKRLVELHGGTMWLESEIDQGSKFFFSL 1121


>gi|169335410|ref|ZP_02862603.1| hypothetical protein ANASTE_01822 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258148|gb|EDS72114.1| hypothetical protein ANASTE_01822 [Anaerofustis stercorihominis DSM
           17244]
          Length = 526

 Score =  283 bits (724), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 100/504 (19%), Positives = 195/504 (38%), Gaps = 48/504 (9%)

Query: 334 FVYSHGNLFYANPSFLLLTKYKSVD-DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
            +  +    +AN  +  L  Y   + +++               +        +  +  +
Sbjct: 33  LLDEYFTTVWANDYYYDLIGYPKDEYEVKFKNRPDIYYKKHGYLNELEEITKTVIETINS 92

Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
             +  + +  +    +       +     ++       +     ++D  +     + +  
Sbjct: 93  GKSDYSIITRLPVKGKKGHVWVRMNATFTDEIINGKQVSYTVITNIDDLV-----QTQKT 147

Query: 453 QLCSILEATSD----GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
           QL +           GI   + E  +L       KL  Y  E          +      +
Sbjct: 148 QLITT-NNLPGLIFKGIIKNDNELELLDIQDKNDKLLNYKNEH------YNMMSDFNRQI 200

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII---IKKLPFSSCYSLT---MHDIS 562
           + ++L +I + +  + L K         + + ++I    I  +     Y      + D++
Sbjct: 201 IKNHLIDIKAGNHIRFLAK---LKDNNGENIWMQINADCIDWIREEPVYLFVCIDVTDLT 257

Query: 563 EWKQEKN-------KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
           + ++ +        +L  A K A+  +  KS+FL+ +SH+IRTP+ AI+G +E+ +    
Sbjct: 258 DLRKMQTKLEKQSVELQKALKEAKNANRAKSEFLSSMSHDIRTPMNAIMGMTEIAQMNI- 316

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
             L   +  +    I  SG  +L ++ND+LD+SKIESGKM L  +  SL E +   +S++
Sbjct: 317 --LNTDKVNDCLKKISISGQHLLGLINDVLDMSKIESGKMTLRNDSASLPEVLENVVSIL 374

Query: 676 QLYANEKR----ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
           Q     +     I IR     +      D   ++Q  +NILSNA  FTP  G I +    
Sbjct: 375 QPMVKSREQSFSIRIRNLVHED---FYFDALRLRQCFINILSNATKFTPEKGSITVDVEE 431

Query: 732 T-----SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
                    +++    DTG+G+    L      F +  + +  + EG+GLG+ + K +VD
Sbjct: 432 EYTGDPDYSKLMFTFTDTGIGIKEEFLNNIFDSFTREKDGRVDKTEGSGLGMAITKKIVD 491

Query: 787 ANMGKFYIFSTPAKGTLIEIIFPL 810
              G   + S    GT   +  PL
Sbjct: 492 IMNGTIEVKSKVGMGTTFIVTLPL 515


>gi|269960101|ref|ZP_06174478.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269835400|gb|EEZ89482.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 639

 Score =  283 bits (724), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 74/260 (28%), Positives = 136/260 (52%), Gaps = 8/260 (3%)

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
             +    + + ++  A+  AE  +  KS+FLA +SHEIRTP+  IIG + ++ + +    
Sbjct: 218 RSVERVSEHQLEIEEARDKAEVANRKKSEFLATMSHEIRTPMNGIIGIASLLGDTKL--- 274

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
            + +  ++ + I+ S N ++ I++D+LD SKIE+GK+ L     +L + + E   L  + 
Sbjct: 275 -DEQQKDFVSIINSSSNSLMVIIDDILDFSKIEAGKIELETATYNLLDLLHEVGRLHTVK 333

Query: 679 ANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNE- 735
           A +K + +       +P  +  D+  +KQ+  N+LSNA+ FT  G  ++++S  +  ++ 
Sbjct: 334 AQQKGLQLVCDIDAQLPSEVEGDVGRLKQVLSNLLSNAVKFTERGHVKLMVSQVNREDDI 393

Query: 736 -EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
             V  RV D+G+G+     +   + F Q   S   +  GTGLGL +  ++V+   G+  +
Sbjct: 394 ASVHFRVVDSGIGIAKENQQAVFEKFQQADGSTTRKYGGTGLGLAICSSLVEVMGGEIRL 453

Query: 795 FSTPAKGTLIEIIFPLYDTS 814
            S P  G+  E   PL   S
Sbjct: 454 TSEPGLGSCFEFTIPLNIVS 473


>gi|307592108|ref|YP_003899699.1| multi-sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7822]
 gi|306985753|gb|ADN17633.1| multi-sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7822]
          Length = 637

 Score =  283 bits (724), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 77/423 (18%), Positives = 177/423 (41%), Gaps = 35/423 (8%)

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
             +   +            ++ E ++ +  + K+  +  Q  S     + GIA ++  G 
Sbjct: 218 NALRIAQVKTQEAQQSAGALQQELIEHQQAEIKLREQEQQFRSTFNQAAVGIAHVSLTGQ 277

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
            L  N+ + ++ GY  E +L + F      +  ++  +Y+  +L+  + QT         
Sbjct: 278 WLRVNQKLCEILGYTNEQLLARTFQEITYPDDLTIDLNYVARMLNNQI-QTYSIEKRYIH 336

Query: 534 KEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD-- 587
           +   L+ + + +  +  ++     +   + DIS+ KQ + +    ++   + +       
Sbjct: 337 QNNFLIWVNLTVSLVRKANGEPKYFISVVEDISQRKQIEAERQQIQQELRQLNLELEQRV 396

Query: 588 ----------------FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
                           F   VSH++R PL  I GF+  +       + +     Y + I 
Sbjct: 397 IERTAQLQEINQELETFTYSVSHDLRAPLRTIQGFAVALLEDCGSQIED-FCKSYIDSII 455

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
                +  +++DLL  S++   +  +  +P +LD+ + +A+  +     EK   I+ +  
Sbjct: 456 DDAAQMNQLISDLLAYSRL--TRTEIILQPTALDQVLDQALKQLTTQIEEKHAQIQIALP 513

Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQ----IIISTTHTSN-EEVILRVRDTGV 746
             +P+++A   ++ Q+ +N+LSNA+ F     Q    I ++T    N + + L + D G+
Sbjct: 514 --LPQVMAHRSTLIQVIVNLLSNALKFIKPDIQPQIDIFVTTERQDNQDWIKLSIVDNGI 571

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+     E+  + F ++  ++     GTG+GL + +  ++   G+  + S   +G+   I
Sbjct: 572 GIAPEHQERVFQVFERLHGAES--YPGTGIGLAIVRKGLERMGGRVGVQSLLGQGSHFWI 629

Query: 807 IFP 809
             P
Sbjct: 630 ALP 632



 Score = 51.2 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 26/250 (10%), Positives = 77/250 (30%), Gaps = 9/250 (3%)

Query: 93  GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQ-NTWYGKTTLW 150
           G    ++++L + +G    +++     +++    +  + + +  +L  Q  T+  +    
Sbjct: 276 GQWLRVNQKLCEILGYTNEQLLARTFQEITYPDDLTIDLNYVARMLNNQIQTYSIEKRYI 335

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL-HE 209
                   + ++L    +   N E   F    +V          A  +++ ++   L  E
Sbjct: 336 HQNN--FLIWVNLTVSLVRKANGEPKYF--ISVVEDISQRKQIEAERQQIQQELRQLNLE 391

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
           +++       +  +I  +     +    +  + L         +L+     +    +S +
Sbjct: 392 LEQRVIERTAQLQEINQELETFTYSVSHDLRAPLRTIQGFAVALLEDCGSQIEDFCKSYI 451

Query: 270 -PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
               +D   +N        Y    +         L      +L     + E    +    
Sbjct: 452 DSIIDDAAQMNQLISDLLAYSRLTRTEIILQPTALDQVLDQALKQLTTQIEEKHAQIQIA 511

Query: 329 CPIP-FFVYS 337
            P+P    + 
Sbjct: 512 LPLPQVMAHR 521


>gi|296187919|ref|ZP_06856311.1| PAS domain S-box domain-containing protein [Clostridium
           carboxidivorans P7]
 gi|296047045|gb|EFG86487.1| PAS domain S-box domain-containing protein [Clostridium
           carboxidivorans P7]
          Length = 691

 Score =  283 bits (724), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 100/511 (19%), Positives = 198/511 (38%), Gaps = 24/511 (4%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
             L     +      + ++       V+     L   N +   +   K +  ++     S
Sbjct: 162 EILRNREKQHLMHLKDVINNISEGIMVFDTNEKLSLCNKAVFKILNLKVIQLVDE-SAFS 220

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE-NSLAMTFIPFEKANQFPE 426
               A  ++D        +Y   +        +  I+         +        N+  E
Sbjct: 221 EKYKAIYINDEGQTTEKTIYDYIKVKKTMRNMIFKIEDRVTFEIKYLELNISPILNKKDE 280

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI-ILSTNRAVSKLF 485
            +       +  ++R+++   E +   +  ++      IA+++  GI     N+   ++ 
Sbjct: 281 IIYTIMTIKDVTESRLHQINAEEQAAFIKDVVNTVDVPIAVVDYPGISYRLMNKKYEQIL 340

Query: 486 GYPVEDILRKPFTVFLEQNTPSV---MNHYLTEILSLDLRQTLE-KITLGSTKEEKLLSL 541
           GY    +  +      + +   V   +   L  +   +    +          EE+   +
Sbjct: 341 GYNNYIMFDEKALDCEKGSYKYVKGNLYKILNSVGEKNKPYAINPYKIEDDKGEERFYKI 400

Query: 542 RIIIKKLPFSS-CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
           +    K   S+    +   DI+E         +     EK +  K +F   +SHE+RTPL
Sbjct: 401 KFTPYKNKNSNTRIHIYGSDITEE-------VNHNIELEKITKLKDEFFTIISHELRTPL 453

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH-- 658
           T I    + +    +     P   +  + I+++ + +L ++N++LDISK E+G ++++  
Sbjct: 454 TIICSSLQ-LAYDVYDKEITPNMDKTLSRINQNCSRLLKLINNILDISKAEAGFLSVNNT 512

Query: 659 -FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
            FE V + E +   I+    YA  K I +          +  D    ++I LN+LSNAI 
Sbjct: 513 NFEAVYVSEVI---INSSNSYAVSKGIELIFDTNQEEINVRLDKDKYEKILLNLLSNAIK 569

Query: 718 FTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
           FTP G +II++          L V+D G+G+   ++      F Q+ +S   R EGTG+G
Sbjct: 570 FTPEGKKIIVTLKSEEE-YFYLSVKDFGIGIPGDKINSIFDRFSQLNSSLTRRAEGTGIG 628

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           L L K +++   G+  + S   KGT   +  
Sbjct: 629 LALVKKIIELMDGEIEVISEVGKGTEFIVKL 659


>gi|255527532|ref|ZP_05394399.1| histidine kinase [Clostridium carboxidivorans P7]
 gi|255508770|gb|EET85143.1| histidine kinase [Clostridium carboxidivorans P7]
          Length = 557

 Score =  283 bits (724), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 100/511 (19%), Positives = 198/511 (38%), Gaps = 24/511 (4%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
             L     +      + ++       V+     L   N +   +   K +  ++     S
Sbjct: 28  EILRNREKQHLMHLKDVINNISEGIMVFDTNEKLSLCNKAVFKILNLKVIQLVDE-SAFS 86

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE-NSLAMTFIPFEKANQFPE 426
               A  ++D        +Y   +        +  I+         +        N+  E
Sbjct: 87  EKYKAIYINDEGQTTEKTIYDYIKVKKTMRNMIFKIEDRVTFEIKYLELNISPILNKKDE 146

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI-ILSTNRAVSKLF 485
            +       +  ++R+++   E +   +  ++      IA+++  GI     N+   ++ 
Sbjct: 147 IIYTIMTIKDVTESRLHQINAEEQAAFIKDVVNTVDVPIAVVDYPGISYRLMNKKYEQIL 206

Query: 486 GYPVEDILRKPFTVFLEQNTPSV---MNHYLTEILSLDLRQTLE-KITLGSTKEEKLLSL 541
           GY    +  +      + +   V   +   L  +   +    +          EE+   +
Sbjct: 207 GYNNYIMFDEKALDCEKGSYKYVKGNLYKILNSVGEKNKPYAINPYKIEDDKGEERFYKI 266

Query: 542 RIIIKKLPFSS-CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
           +    K   S+    +   DI+E         +     EK +  K +F   +SHE+RTPL
Sbjct: 267 KFTPYKNKNSNTRIHIYGSDITEE-------VNHNIELEKITKLKDEFFTIISHELRTPL 319

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH-- 658
           T I    + +    +     P   +  + I+++ + +L ++N++LDISK E+G ++++  
Sbjct: 320 TIICSSLQ-LAYDVYDKEITPNMDKTLSRINQNCSRLLKLINNILDISKAEAGFLSVNNT 378

Query: 659 -FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
            FE V + E +   I+    YA  K I +          +  D    ++I LN+LSNAI 
Sbjct: 379 NFEAVYVSEVI---INSSNSYAVSKGIELIFDTNQEEINVRLDKDKYEKILLNLLSNAIK 435

Query: 718 FTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
           FTP G +II++          L V+D G+G+   ++      F Q+ +S   R EGTG+G
Sbjct: 436 FTPEGKKIIVTLKSEEE-YFYLSVKDFGIGIPGDKINSIFDRFSQLNSSLTRRAEGTGIG 494

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           L L K +++   G+  + S   KGT   +  
Sbjct: 495 LALVKKIIELMDGEIEVISEVGKGTEFIVKL 525


>gi|270308800|ref|YP_003330858.1| sensory box sensor histidine kinase [Dehalococcoides sp. VS]
 gi|270154692|gb|ACZ62530.1| sensory box sensor histidine kinase [Dehalococcoides sp. VS]
          Length = 392

 Score =  283 bits (724), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 86/393 (21%), Positives = 167/393 (42%), Gaps = 24/393 (6%)

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAII-----NREGIILSTNRAVSKLFGYPVE 490
           E    +     ++ E ++   +    +D I +      N    I   N A  K FGY  E
Sbjct: 9   EIAKLKQCNYALKKERLKYRELFNRANDAILLFKFNNPNEPVTITDANTAACKHFGYTYE 68

Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII--IKKL 548
           +++ K         T       L ++                 K  + + + I   I  L
Sbjct: 69  ELIGKTNLFIDSPETAIRGTEILNDLFIKGHEVL---EIAHKNKNGESIPVEINHKIIYL 125

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS-------HKSDFLARVSHEIRTPLT 601
              +     + DI+  K+ + +L  + +  ++           +  F+  + HE++TPLT
Sbjct: 126 AGDTMIISVIRDITARKKNEQELRESLEREKQLRETLENEISQRVTFMRALVHELKTPLT 185

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           +++  SE + ++      N  YI+           +   V++LLDI++ E G + L  EP
Sbjct: 186 SMLATSE-LLSKNLKEEPNHSYIKCL---YAGIQDLNLRVDELLDIARGEVGLLRLECEP 241

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           +++ E + +   +++         +  S  N++P ++AD + +KQ+ LN+L NA  +TP 
Sbjct: 242 LNIYELLKDVEEIIRPVFESNAQKLTISLQNSLPVVVADYKRLKQVILNLLDNATKYTPL 301

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           GG I +S   + N+ +++ V+D G GM+  E     K + +          G G+GL L+
Sbjct: 302 GGDIRLSAAAS-NKYLVIEVKDNGKGMSPKETGALFKLYSRSNKKGSPS--GLGIGLALS 358

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           K +VD + G+  + S   +G+      PL   +
Sbjct: 359 KMIVDLHEGEITVKSKLGEGSTFTFSIPLRPNA 391


>gi|86748489|ref|YP_484985.1| PAS/PAC sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris HaA2]
 gi|86571517|gb|ABD06074.1| PAS/PAC sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris HaA2]
          Length = 510

 Score =  283 bits (724), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 84/528 (15%), Positives = 197/528 (37%), Gaps = 32/528 (6%)

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIA 363
             +    S+     +    + +D+  +  + +         +P+   L    +   I+  
Sbjct: 1   MTDQAPSSSEALARDRRLQQGIDQYGVGSWELNLATRELAWSPTTRRLYGVTTDTPID-- 58

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
                 +    L D   +   +    DR        ++ +    +    +          
Sbjct: 59  --FDAFIALVDLEDRERVAQALQRSIDRGE--HLDIMYRVADRGQPRHWLRARG-GLIKV 113

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
                   GI  +    ++ ++++ ++  QL SIL+   D + +I+  GI+   + A  +
Sbjct: 114 EGTAGYLCGIVLDIDQQKVLEQELRLQQSQLRSILDTVPDAMILIDGRGIMRFFSSAAER 173

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT--LEKITLGSTKEEKLLSL 541
           +FG   ++ + +  +V + +   S  ++Y++   S   R    + +I  G  K+     +
Sbjct: 174 MFGLSEKEAIGQNISVLMPRPDASRHDNYISRYNSTGERHIIGIGRIVTGQRKDGTTFPI 233

Query: 542 RIIIKKLP--FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS--HKSDFLARVSHEIR 597
            + I ++       ++  + D++E++Q + +L   +      S      +  + ++HE+ 
Sbjct: 234 HLSIGEMESGGERYFTGFIRDLTEYQQTQARLHELQAELVHVSRLTAMGEMASALAHELN 293

Query: 598 TPLTAIIGF---SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI-SKIESG 653
            PL+AI  +   S  +      P   P+                 I+  L D  ++ ES 
Sbjct: 294 QPLSAISNYMKGSRRLLADSSDP-NVPKIEHAMERAAEQALRAGQIIRRLRDFVARGES- 351

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713
                    SL + V EA +L    A E+ +++R          L D   ++Q+ +N+  
Sbjct: 352 ----EKRVESLAKLVEEAGALGLTGAREQGVVLRFKLDPASDMALVDRVQIQQVLVNLFR 407

Query: 714 NAIHFT--PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           NA+         ++++S    +++ + + V DTG G          + F     +     
Sbjct: 408 NALEAMANSEKKELVVSNARVADQMIEISVADTGSGFHEDVKSSLFQTFFTTKET----- 462

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819
            G G+GL +++++++A+ G+ +  S P+ G       P        D 
Sbjct: 463 -GMGVGLSISRSIIEAHGGRMWAESNPSGGATFRFTLPAAAQEDLADA 509



 Score = 55.4 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/273 (7%), Positives = 66/273 (24%), Gaps = 10/273 (3%)

Query: 187 NRVDNDPRALGKRLDKKFSHL-HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE 245
               ++  A  +RL +          + + +  +  +   +++             +   
Sbjct: 5   APSSSEALARDRRLQQGIDQYGVGSWELNLATRELAWSPTTRRLYGVTTDTPIDFDAFIA 64

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES---FEY 302
               +D     +           L            ++  +   G ++            
Sbjct: 65  LVDLEDRERVAQALQRSIDRGEHLDIMYRVADRGQPRHWLRARGGLIKVEGTAGYLCGIV 124

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIE 361
           L       L       ++     +D  P     +   G + + + +   +      + I 
Sbjct: 125 LDIDQQKVLEQELRLQQSQLRSILDTVPDAMILIDGRGIMRFFSSAAERMFGLSEKEAIG 184

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
               +S L+  P  S ++          +R  I     +   + +               
Sbjct: 185 QN--ISVLMPRPDASRHDNYISRYNSTGERHIIGIGRIVTGQRKDGTTF---PIHLSIGE 239

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
            +        G   +  + +  + ++     +L
Sbjct: 240 MESGGERYFTGFIRDLTEYQQTQARLHELQAEL 272



 Score = 38.1 bits (87), Expect = 6.6,   Method: Composition-based stats.
 Identities = 27/249 (10%), Positives = 63/249 (25%), Gaps = 14/249 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTWYGKT 147
           ID  G ++  S    +  G    + IG  +  +        +++ I              
Sbjct: 158 IDGRGIMRFFSSAAERMFGLSEKEAIGQNISVLMPRPDASRHDNYISRYNSTGERHIIGI 217

Query: 148 TLW----PIEGTNLYVPIDLA-ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
                    +GT    PI L+         R F+GF     +         +A    L  
Sbjct: 218 GRIVTGQRKDGTTF--PIHLSIGEMESGGERYFTGF-----IRDLTEYQQTQARLHELQA 270

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
           +  H+  +           +++    S   +    ++         +   +    +    
Sbjct: 271 ELVHVSRLTAMGEMASALAHELNQPLSAISNYMKGSRRLLADSSDPNVPKIEHAMERAAE 330

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
            +   +               ++K+     +   +     L+      +   F       
Sbjct: 331 QAL-RAGQIIRRLRDFVARGESEKRVESLAKLVEEAGALGLTGAREQGVVLRFKLDPASD 389

Query: 323 PETVDKCPI 331
              VD+  I
Sbjct: 390 MALVDRVQI 398


>gi|152976031|ref|YP_001375548.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           cereus subsp. cytotoxis NVH 391-98]
 gi|152024783|gb|ABS22553.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           cytotoxicus NVH 391-98]
          Length = 506

 Score =  283 bits (724), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 93/498 (18%), Positives = 183/498 (36%), Gaps = 41/498 (8%)

Query: 322 TPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
                   P     +   G + + NPS   +  Y S +       L   +    +  + +
Sbjct: 34  YASLFQHNPDGIISLDLQGTILHINPSAEKILGYASHE-------LEQTVITAIVEKHIS 86

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
              +   ++  +      R+     N      +T +     ++    +       E  + 
Sbjct: 87  DHVLRYIKNTTSDYQTEYRISIYHKNGSKIDVITKLVPIFIHKQLTGVYAIIKPLEKSER 146

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
               + ++    +L +++ A    +   + EG  +  N      F +       K  +  
Sbjct: 147 I--AQILKESEKRLRTLMNAMPAFVIFKDHEGRWIEANDYALSCFDFHDVPYHGKKDSEL 204

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLG-----STKEEKLLSLRIIIKKLPFSSC-- 553
           ++ N              +D     ++  +        K    L L +    L  S    
Sbjct: 205 IQYN--EAYREAFLHCEEIDEIAWQKREIIHGEEFIIHKGTSNLILNLSKVPLFHSDGSR 262

Query: 554 --YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
               +   D++E K+ K  L  ++K+A           A ++HEIR PLT++ GF  ++K
Sbjct: 263 KGIIVMGRDVTELKETKKLLRKSEKLAVV-----GQLTAGIAHEIRNPLTSLKGFLTLLK 317

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
                P  + +   Y + +    + +  I +  + +SK +   ++ H     +   + E 
Sbjct: 318 -----PEISEQNKWYIDVMLSEISQMESITSQFMAMSKPQVLSIDFH----QIQTLIEEV 368

Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
           ++ +   A    + I       IP I  D   +KQ+ +NIL NAI   P GG I I T  
Sbjct: 369 VTFILPTAIMHSVHIIMDHTAVIPEIQCDGNQLKQVFINILKNAIEAMPDGGNIFIQTEA 428

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
             +E + +R+ D G G+    + +  +PF        ++ +GTGLGL +   +++ + GK
Sbjct: 429 LDSEFICIRIIDEGCGIPENRISRLGEPFY------SLKEKGTGLGLMICYKIIEEHQGK 482

Query: 792 FYIFSTPAKGTLIEIIFP 809
             I S    GT +EI  P
Sbjct: 483 LQILSEVNNGTTVEIYLP 500


>gi|315647361|ref|ZP_07900474.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           vortex V453]
 gi|315277563|gb|EFU40892.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           vortex V453]
          Length = 479

 Score =  283 bits (724), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 95/493 (19%), Positives = 194/493 (39%), Gaps = 37/493 (7%)

Query: 326 VDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
            ++  I   + S  G L  AN +   L  Y        A    ++     L +       
Sbjct: 13  FEQAVIGMAIVSLDGTLLKANTALSDLLGYTQQALTAGAQQAESI---RMLLNCIVQNVK 69

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
                 ++        HT     ++ L +      + +             +    R   
Sbjct: 70  ASQDHQQSINPFE---HTYHHPEKHMLYLNIHTGIELDTEKNPKSYWVQLEDRTLHRQLM 126

Query: 445 RKMEIEVMQL-------CSILEATSDGIAIINREGIILSTNRAVSKLF-GYPVEDILRKP 496
            ++E +  +L         +LE     + I  ++GI+   N A  ++       D+L   
Sbjct: 127 ERLEQKEQKLFEKEHTFLQLLEILPLSVLIT-KKGIVQYVNPAALRMVKATHPRDVLGIS 185

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556
             V ++ ++ + +           +  ++  +      +EK++S   I+      +    
Sbjct: 186 TDVVVDVSSHNDLIKRRMRYEKDGVIGSVNYLIRCLDGQEKIVSGCTIMVHYEGDTAALG 245

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
              DI+E + E++++  ++K+            A ++HEIR PLT+I GF +++++    
Sbjct: 246 IFKDITEQRIEEDRVMQSEKLTTA-----GQLAAGIAHEIRNPLTSINGFVKLLRSSESS 300

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
                    Y   I+     +  IVN+LL +SK +   ++    P+ +   + + I+L++
Sbjct: 301 NEL------YFEIIESELKRIELIVNELLVLSKPQGVHVS---GPIEVLPILEQIITLMK 351

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
           + A  K I I   + +    +  ++  +KQ+ +N+L NA+     GG I +     S   
Sbjct: 352 VQAALKNIEIIPHYPDVPISVQGEVNQLKQVFINLLKNAMEAMNQGGTITVDM-LRSGHN 410

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           V + V+D G+GMT  +++   +PF    ++      GTGLGL + K ++  + G   + S
Sbjct: 411 VQIVVQDEGIGMTPEQIQSLGQPFFTTKDT------GTGLGLMITKNIIHNHGGTMNVES 464

Query: 797 TPAKGTLIEIIFP 809
            P  GT   I  P
Sbjct: 465 VPDHGTTFTIQLP 477



 Score = 42.3 bits (98), Expect = 0.38,   Method: Composition-based stats.
 Identities = 20/163 (12%), Positives = 51/163 (31%), Gaps = 3/163 (1%)

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTK 353
                +                 E E+   + ++  P+   +   G + Y NP+ L + K
Sbjct: 115 QLEDRTLHRQLMERLEQKEQKLFEKEHTFLQLLEILPLSVLITKKGIVQYVNPAALRMVK 174

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
                D+        ++D    +D    +  M Y  D    + +  +  +    +     
Sbjct: 175 ATHPRDVLGI-STDVVVDVSSHNDLIKRR--MRYEKDGVIGSVNYLIRCLDGQEKIVSGC 231

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
           T +   + +     + ++  E    + R+ + +      QL +
Sbjct: 232 TIMVHYEGDTAALGIFKDITEQRIEEDRVMQSEKLTTAGQLAA 274


>gi|315125188|ref|YP_004067191.1| sensor protein [Pseudoalteromonas sp. SM9913]
 gi|315013701|gb|ADT67039.1| sensor protein [Pseudoalteromonas sp. SM9913]
          Length = 1117

 Score =  283 bits (724), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 104/557 (18%), Positives = 190/557 (34%), Gaps = 80/557 (14%)

Query: 314 YFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTL-LD 371
              E E +     +   +  + ++      + +     + +Y   +          L   
Sbjct: 289 REQESERMLEVMSNLAQVGAWSFNLEKKHVFWSDMTKKIFEYPLDE---QPKWSENLNYF 345

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
               S     K V          +    L  I  N +   A+     E  N     +   
Sbjct: 346 KEGESREKIAKLVERAIKHGE--SYETELEVINANGQPVWALVHGEAEHKNGRC--VRIF 401

Query: 432 GIEPEDVDTRINK---RKMEIEVMQLCSILEATSDGIAIINREGII-------------- 474
           G        +  +   RK+      L S+    SD I      G +              
Sbjct: 402 GSLQNIDARKKVELENRKIARFNETLASL--TVSDEIL----NGKLSQSKELITQSICQA 455

Query: 475 LSTNRAVSKLFGYPVEDILR-----KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--- 526
           L  N A  KLF      +++     +  +          +  + T I    +    +   
Sbjct: 456 LEVNCASIKLFNQQRTQLIQFASFNRSGSENNIPWLQETIPDFFTAIERKAIFCVDDAQQ 515

Query: 527 KITLGSTKEEKLLSLRII------IKKLPFSSCYSLTMHDI------------------- 561
              L   KE  L    +       I     S        DI                   
Sbjct: 516 HPYLAPIKESYLQPFSVKTMLCVLIPASSGSIGIVCAEQDIVRTWSHNEESFLIAVGALI 575

Query: 562 ------SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
                  +  + + +L  AK+ AE+    KS+FLA +SHEIRTP+  ++G   ++K  + 
Sbjct: 576 GSLYSSQQRIETEAQLVKAKEAAEQAVIAKSEFLASMSHEIRTPMNGVLGMLNIVKATQL 635

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
               + +   +      S   +L I+ND+LD SKIE+GK+++     +L   + E +   
Sbjct: 636 ----DQQQKHHIKLAQSSAESLLGIINDILDFSKIEAGKLDIENIQFNLPRLLGEVVESF 691

Query: 676 QLYANEKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
            L A +    +     +      ++D   ++QI  N++ NA+ FT   G+I+++   T  
Sbjct: 692 ALKAEQNNTTLILDATHITSSEFISDPNRLRQILSNLIGNAVKFT-QNGEILVTAKITHT 750

Query: 735 EEVIL---RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
            +  +    + D+G+G++  +       F Q   S   +  GTGLGL + K + +   G+
Sbjct: 751 LDATVLECAIADSGIGISAEKQPHLFDSFTQADTSTTRQYGGTGLGLAIVKQLCELMSGE 810

Query: 792 FYIFSTPAKGTLIEIIF 808
             + STP KG+      
Sbjct: 811 VNVSSTPNKGSTFSFFI 827


>gi|229084388|ref|ZP_04216668.1| hypothetical protein bcere0022_10280 [Bacillus cereus Rock3-44]
 gi|228698928|gb|EEL51633.1| hypothetical protein bcere0022_10280 [Bacillus cereus Rock3-44]
          Length = 441

 Score =  283 bits (724), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 69/246 (28%), Positives = 124/246 (50%), Gaps = 5/246 (2%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E  +     +      E E + + +FLA VSHE+RTPL+ I G+SE I +   G     +
Sbjct: 192 EIGRLGKAFNKMAHSLETEDAKRKEFLANVSHELRTPLSYIKGYSEAILD---GVAKGEQ 248

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             ++   I +    +  +V+DLLD++++E     L  +P+   + + + +   +L   EK
Sbjct: 249 QSKFMQLIHKEAGRMQRLVHDLLDLAQLEGEHFPLKKQPIVFAQLIEDVLETYELKWTEK 308

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           ++ I      +I  ++ D   ++Q+  N+L NAI +T   G I I      N    LR+ 
Sbjct: 309 QLRISKDLDPDII-VMIDEDRMQQVLHNLLDNAIRYTNQNGSIAIRLEKKDN-SCELRIE 366

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG+G+ +  LE+  + F ++  ++  +  GTGLGL + K +V  + G++ + S   KGT
Sbjct: 367 DTGIGIDSEHLEQLGERFYRVDKARSRQHGGTGLGLAIVKQIVYIHEGEWQVESEKGKGT 426

Query: 803 LIEIIF 808
            + I  
Sbjct: 427 TVIITL 432


>gi|172035081|ref|YP_001801582.1| two-component sensor histidine kinase [Cyanothece sp. ATCC 51142]
 gi|171696535|gb|ACB49516.1| two-component sensor histidine kinase [Cyanothece sp. ATCC 51142]
          Length = 453

 Score =  283 bits (724), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 84/236 (35%), Positives = 136/236 (57%), Gaps = 3/236 (1%)

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
            K  +  S +KSD+ + VSHE+RTPL  I+GFS++++ + +G L N +  +Y N I  SG
Sbjct: 202 NKKLKLSSHNKSDYFSHVSHELRTPLAGILGFSKMLREEIYGTL-NEKQKQYVNGIRVSG 260

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
             +L +VND LD+SKIE+ K  L  E V++++    AIS+VQ  ANE+ + +  + +  +
Sbjct: 261 EHLLALVNDFLDLSKIEANKEELFLETVAVEDICLAAISIVQPKANEQNLDLILNLSEQV 320

Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELE 754
                D R +KQI +N+LSNAI FT  G  + +      +  +   V DTG+G+   + +
Sbjct: 321 DFCTVDQRKIKQILINLLSNAIKFTEKGS-VTLQVKKIES-LLTFCVIDTGIGIKEEDQQ 378

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           K  +PF QI ++   + +GTGLGL L++ +   + G   + S   KG+   +  PL
Sbjct: 379 KLFQPFQQIHSNLNRKHKGTGLGLALSRKLAQLHQGNLTLTSEYGKGSCFTLELPL 434


>gi|163938904|ref|YP_001643788.1| GAF sensor hybrid histidine kinase [Bacillus weihenstephanensis
           KBAB4]
 gi|163861101|gb|ABY42160.1| GAF sensor hybrid histidine kinase [Bacillus weihenstephanensis
           KBAB4]
          Length = 896

 Score =  283 bits (724), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 77/340 (22%), Positives = 148/340 (43%), Gaps = 29/340 (8%)

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
            G  +  I+ +     L   + ++        +  +  QT  +      +E +  + ++ 
Sbjct: 406 LGLTIHSIMGRMRIQTLLHESQAMTEEL---QVQSEELQTQAEELQMQAEELRTTNEQLE 462

Query: 545 IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
            +               ++ +  K++L        + S +KS+FLA +SHE+RTPL +I+
Sbjct: 463 SRTEEAEQKT-------TDLEITKSELEEKASEILRSSKYKSEFLANMSHELRTPLNSIL 515

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
             SE+++      L +    E A  I  SG  +L ++ND+LD+SK+E+GK+++ FE  ++
Sbjct: 516 LLSEMLRENHDNHLSDDEI-ELATVIHSSGKDLLALINDILDLSKVEAGKLDVIFEATNI 574

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGG 723
            +  +         A +K +      ++ IP +   D + ++QI  N+LSNA  FT  G 
Sbjct: 575 SDMAANMHQNFLHIAAQKNVEFTIEDSDIIPNLFYTDAKRIEQIIKNLLSNAFKFTEKGS 634

Query: 724 QIIISTTHTS--------------NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
              +S                   N+ + + V+DTG+G+   + +   + F Q   +   
Sbjct: 635 ---VSLYFDPIETTNLSNEMQSISNDWITISVKDTGIGIATEQHQLIFEAFQQADGATIR 691

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +  GTGLGL + K       G   + S   +G+   +  P
Sbjct: 692 KYGGTGLGLSICKEFARLLGGWITLESNVGEGSTFTVYIP 731


>gi|110634292|ref|YP_674500.1| multi-sensor hybrid histidine kinase [Mesorhizobium sp. BNC1]
 gi|110285276|gb|ABG63335.1| multi-sensor hybrid histidine kinase [Chelativorans sp. BNC1]
          Length = 1038

 Score =  283 bits (724), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 101/470 (21%), Positives = 194/470 (41%), Gaps = 20/470 (4%)

Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
           +FL          + +  G +            A  P      D     A A   +    
Sbjct: 143 AFLAEYLDAQAGALYVRRGSTFGRSGVYGVPAGAPIPDRFKPGDGLLGQAVADRRSFVLR 202

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
                 + F       +    +       ++V+  +    ++    ++  +LE  S+ +A
Sbjct: 203 DVPENYLYFGSGLGRAKPRHLLIAPASVDDEVNAVLELGFLKEAGEEVGELLERISEPMA 262

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
           I  R     +  + + +      E++  +              N  L           + 
Sbjct: 263 IALRSARYRAQLQELLEETQRQAEELQTQS-------EELRSANEELENQSRSLQDSQVR 315

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
                    E+   L     +L   +       D  E  + +  L    +  E+ S +KS
Sbjct: 316 LE-------EQQAELEQSNAQLEEQTQLLEVQRD--ELSRAQGALQAKARDLEEASRYKS 366

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
           +FLA +SHE+RTPL +++  + ++ + R G L +   +++A  I+ +GN +L+++ND+LD
Sbjct: 367 EFLANMSHELRTPLNSLLIMARLLADNREGNLTSD-QVKFAETIETAGNDLLNLINDILD 425

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVK 705
           ISKIE+G + L  E V ++  + +  +  Q  A+EK +  R       P  I +D + ++
Sbjct: 426 ISKIEAGHIELQIERVRVEPMLEKLRATFQSSASEKGLNFRIETVPGTPDRIESDPQRIE 485

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           Q+  N LSNAI FT  G ++++S     +  +   VRDTG+G+   + +   + F Q   
Sbjct: 486 QVLKNFLSNAIKFTEKG-EVVLSVAEEEDGRIAFAVRDTGIGIPEDQQQAIFEAFRQADG 544

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP-LYDTS 814
           S   +  GTGLGL ++  +     G+  + ST  +G+   ++ P +YD +
Sbjct: 545 SINRKYGGTGLGLSISSELTRVLGGEIRVESTVGQGSSFILVVPKIYDAA 594


>gi|253567011|ref|ZP_04844462.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|251944135|gb|EES84644.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
          Length = 1039

 Score =  283 bits (724), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 96/524 (18%), Positives = 189/524 (36%), Gaps = 64/524 (12%)

Query: 317 EGENLTPETVDKCPIPFF----------VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
           E        +D  P+ +           V         NP F     ++  D +      
Sbjct: 402 EAMANYKNLIDNMPLLYMQEKLIVNEQGVADDLIYLNVNPHFEKHF-FRREDVVGKR--A 458

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
           S L           +  + +   +   I        I                      +
Sbjct: 459 SELFPESL---PEFLHFIQISLKENRAITFPYYFKKIDR----------FYDIVLKGAHQ 505

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI----------AIINREGIILS 476
               +    +  +    ++K+     +L   LE  +D I           + +    I  
Sbjct: 506 ENVIDIFCVDSTELHRAQQKLNATNHKLSMALE-VADIIPWKWDLLSKTILCDINKPIEL 564

Query: 477 T---NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLG 531
           +   N    +    P      K     + +     +     +++   L +  E  ++   
Sbjct: 565 SAQGNNVSEEQLAVPDSQYFSK-----IYKEDRIRVEQAYKDLIEGRLEKVKEEYRVINI 619

Query: 532 STKEEKLLSLRI-IIKKLPFSSCYSLTM----HDISEWKQEKNKLSHAKKIAEKESSHKS 586
                K+  +      +    +   +T+      I+  K+ + +L+ AK  AE+ +  KS
Sbjct: 620 RNHTHKIEWVEAQAAVETRDENGIPVTLVGSSQVITGRKKMEMELTSAKDRAEESNRLKS 679

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
            FLA +SHEIRTPL AI+GFS ++ +            EY + I+ +  L+L +++D+LD
Sbjct: 680 AFLANMSHEIRTPLNAIVGFSGILASTEEEEEK----QEYVSIIENNNALLLQLISDILD 735

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706
           +SKIE+G +   +  + L+  + +  S ++L      + +       +  +  +   + Q
Sbjct: 736 LSKIEAGTLEFQYSDIELNTELKKLESTLKLKLKSDDVQLEFVPGLPVCPVCTEKNRLSQ 795

Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSNE-EVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           + +N+++NAI FT  G    I   +     E+   V DTG G+   + E     F ++ +
Sbjct: 796 LIINLVTNAIKFTSRGS---IRFGYEHRGKELYFYVTDTGCGIPKDKQESIFGRFVKLNS 852

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
                 +GTGLGL + + +V+   G   + S   KG+      P
Sbjct: 853 F----AQGTGLGLSICRTLVEHMGGHIGVDSEQGKGSTFWFSLP 892


>gi|170748167|ref|YP_001754427.1| integral membrane sensor signal transduction histidine kinase
           [Methylobacterium radiotolerans JCM 2831]
 gi|170654689|gb|ACB23744.1| integral membrane sensor signal transduction histidine kinase
           [Methylobacterium radiotolerans JCM 2831]
          Length = 511

 Score =  283 bits (724), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 102/278 (36%), Positives = 161/278 (57%), Gaps = 6/278 (2%)

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
            +  L   +          E +Q K     A++ AE+ +  KS FLA +SHE+RTPL AI
Sbjct: 220 TVGALRSRAEKDAVF---GELEQAKANSDEARRRAEEANLAKSRFLATMSHELRTPLNAI 276

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +GFSEV+KN+ FG    P Y EY++ I  SG  +L+++N++LD+S+IE+G+  L+ EPV 
Sbjct: 277 LGFSEVMKNEVFGTHTAPSYREYSHDIHDSGMHLLNLINEILDLSRIEAGRYELNEEPVQ 336

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
           L   V E   ++ L A  K          ++PR+ AD R+++QI LN+LSNA+ FTP GG
Sbjct: 337 LAHVVEECRHMMGLRAKAKNQTFHDLVDGSLPRLWADERALRQIVLNLLSNAVKFTPPGG 396

Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
           +I +    T++    + V+D+G G+   EL   +  FG+   + +   +G+GLGLP+ K 
Sbjct: 397 EIWLKVGWTASGGQYVSVKDSGPGIPEDELGTVLSSFGRGSLAIKTAEQGSGLGLPIVKG 456

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFP---LYDTSHPHD 818
           +V+ + G+F + S P +GT + +  P   + DT  P D
Sbjct: 457 LVELHGGQFQLSSKPREGTEVVVTLPASRVMDTLPPVD 494


>gi|28897344|ref|NP_796949.1| phosphate regulon sensor protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153838055|ref|ZP_01990722.1| phosphate regulon sensor kinase PhoR [Vibrio parahaemolyticus
           AQ3810]
 gi|260364510|ref|ZP_05777131.1| phosphate regulon sensor kinase PhoR [Vibrio parahaemolyticus
           K5030]
 gi|260876306|ref|ZP_05888661.1| phosphate regulon sensor kinase PhoR [Vibrio parahaemolyticus
           AN-5034]
 gi|260898577|ref|ZP_05907073.1| phosphate regulon sensor kinase PhoR [Vibrio parahaemolyticus
           Peru-466]
 gi|260903267|ref|ZP_05911662.1| phosphate regulon sensor kinase PhoR [Vibrio parahaemolyticus
           AQ4037]
 gi|28805553|dbj|BAC58833.1| histidine protein kinase PhoR [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149748522|gb|EDM59381.1| phosphate regulon sensor kinase PhoR [Vibrio parahaemolyticus
           AQ3810]
 gi|308086857|gb|EFO36552.1| phosphate regulon sensor kinase PhoR [Vibrio parahaemolyticus
           Peru-466]
 gi|308092871|gb|EFO42566.1| phosphate regulon sensor kinase PhoR [Vibrio parahaemolyticus
           AN-5034]
 gi|308107959|gb|EFO45499.1| phosphate regulon sensor kinase PhoR [Vibrio parahaemolyticus
           AQ4037]
 gi|308114707|gb|EFO52247.1| phosphate regulon sensor kinase PhoR [Vibrio parahaemolyticus
           K5030]
 gi|328472631|gb|EGF43494.1| phosphate regulon sensor protein [Vibrio parahaemolyticus 10329]
          Length = 432

 Score =  283 bits (724), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 71/364 (19%), Positives = 147/364 (40%), Gaps = 29/364 (7%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           ++   + +  +  E+  D + +   EG I+  NR    L G+   +   +P +  +    
Sbjct: 92  ELTNLIRRFRNGAESLPDAVVVFRAEGNIVWCNRLAQHLLGFHWPEDSGQPISNLIRTPD 151

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
                +       L++R  L    +          L + I        + + + D+S+ K
Sbjct: 152 FIKYLNKKDFSEPLEMRSPLNVERM----------LELRIVPYTEGE-HLMVVRDVSQLK 200

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           Q +                + +F A VSHE+RTP+T + G+ E+   +    +  P + +
Sbjct: 201 QLEG--------------MRRNFFANVSHELRTPMTVLQGYLEM--TEDPDMIVGPMWTK 244

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
               +    N +  +VN LL +SKIE+  M+   + V++   +          + + +  
Sbjct: 245 AHGVMTEQLNRMNSLVNQLLTLSKIEAAPMHELEDVVNVPAMLEVLEKEAISLSGDDQHK 304

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           ++     ++ R+L D   ++    N++ NA+ +TP G  I +    T+     L V D+G
Sbjct: 305 LKFDVDTSL-RVLGDDDQLRSAISNLVYNAVKYTPPGANIHVRWYQTAQG-ACLEVEDSG 362

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
            G+    L +  + F ++  ++     G+GLGL + K  +  +     I S    G+   
Sbjct: 363 DGIEPQHLHRLTERFYRVDKARSRDTGGSGLGLAIVKHALSHHDSHLEIQSEVGVGSKFS 422

Query: 806 IIFP 809
            + P
Sbjct: 423 FVLP 426


>gi|158522821|ref|YP_001530691.1| multi-sensor signal transduction histidine kinase [Desulfococcus
           oleovorans Hxd3]
 gi|158511647|gb|ABW68614.1| multi-sensor signal transduction histidine kinase [Desulfococcus
           oleovorans Hxd3]
          Length = 498

 Score =  283 bits (724), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 79/396 (19%), Positives = 154/396 (38%), Gaps = 20/396 (5%)

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476
                    +    +  E   ++       +  E  ++ +I+E+   G+A+ ++ G ++ 
Sbjct: 115 RIVVERALDKIRLIHETEQLALERSRTLADLGTEKSRISAIVESLPTGVAVTDKNGTVVL 174

Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
            N +   L G   E         ++E      M        +                 E
Sbjct: 175 MNPSFKLLVGLAPETAPGADIATYIEDPVLCDMVRRTARGDNGGAADLFTHELSI--GGE 232

Query: 537 KLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
           K L  R    +          +T+ DI+  K                   KS+F+A+VSH
Sbjct: 233 KYLIARGRPVQAETGECIGTVVTLGDITSIKLL--------------DQLKSEFVAKVSH 278

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           E+R+PL+ I      +         +       +        ++ ++ DLLD+S+IESG 
Sbjct: 279 ELRSPLSTIHEQLGAVLRDMAEENDDNEDQYILSRAKEKTGGLIALIGDLLDLSRIESGG 338

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILS 713
           +  + +P+ L+  ++  +  +Q  A  +   +         P + AD  +++ I  N+++
Sbjct: 339 VTHNIQPIRLENLLASIVDFMQSRAAAREQRLSLELGTGPFPELTADPLALESIFGNLVA 398

Query: 714 NAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
           NA+ +T +GG +++           + V DTG G+     EK  + F ++ +       G
Sbjct: 399 NALQYTGNGGSVVVRADMED-GFFRVSVADTGFGVAEQHREKIFEKFFRVKDENTRFITG 457

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           TGLGLP+ K +V+   G   + S P KG+   +  P
Sbjct: 458 TGLGLPIVKGLVEQMGGTIDLASQPGKGSTFTVRLP 493


>gi|307546290|ref|YP_003898769.1| signal transduction histidine kinase [Halomonas elongata DSM 2581]
 gi|307218314|emb|CBV43584.1| signal transduction histidine kinase [Halomonas elongata DSM 2581]
          Length = 725

 Score =  283 bits (724), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 89/243 (36%), Positives = 132/243 (54%), Gaps = 6/243 (2%)

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
           ++L      AE  S  KS+FLA VSHEIRTPL  +IG SE++               YA+
Sbjct: 214 DELEVTAHRAESASQAKSEFLATVSHEIRTPLNGVIGMSELLSEHHL----PDGARHYAD 269

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I  S   +L+++ND+LD SKIE+G+++L    +SL E V+ A+SL   +A  K I +  
Sbjct: 270 TIHDSAQRLLELINDILDFSKIEAGRLDLETRSLSLSELVNGALSLFAPHAEAKGIHLVA 329

Query: 689 SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747
                +P  I++D   ++QI LN+LSNAI FT  G ++ +S     + E+ + V DTG G
Sbjct: 330 WIDPALPTHIVSDPGRLRQILLNLLSNAIKFTERG-EVRVSAFVADDGELGIDVVDTGCG 388

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           +      +  +PF Q   S   R  GTGLGL + K +V+A  G+  + S P  G+   + 
Sbjct: 389 IDEQRQAQLFEPFRQGDPSTARRFGGTGLGLAICKRLVEALRGRIGMESQPHLGSRCWVR 448

Query: 808 FPL 810
            PL
Sbjct: 449 LPL 451


>gi|239906645|ref|YP_002953386.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239796511|dbj|BAH75500.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 1136

 Score =  283 bits (724), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 93/668 (13%), Positives = 199/668 (29%), Gaps = 59/668 (8%)

Query: 178 FRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP----PH 233
           +    +V             K        L          + E                 
Sbjct: 354 YVMVLLVTNILRRRSVEEKIKDQVSFLETLVNTIPIPIYYKDESGQYRGCNPAFRALCGA 413

Query: 234 LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293
                 V +               +   L  E      + D    +   ++   +    +
Sbjct: 414 GDDPRTVDACAGVADSPLSRALDAEDAGLLREPGVRMAETDIEAADGTPHSVILHRAVYE 473

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPE----TVDKCPIPFF-VYSHGNLFYANPSF 348
           +   +    +      S      E   L  E      +   +  F +   G     NP+ 
Sbjct: 474 SAKGQIAGLVGVLYDVSELKRAAERLRLAEEKYRGIFENSALGIFRMTPDGAAVDVNPAM 533

Query: 349 LLLTKYKSVDDIEIAGG--LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
           L +     +D +    G  +  L              +     +        R       
Sbjct: 534 LSMLGVDDLDTLLRRRGDMVEVLFGG----RERFTALIDSAVDEDATAQFETRFVR---P 586

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
               +         A+         G+  +       +R +      L  +L+     ++
Sbjct: 587 DARQVTANVTIRLVADPEGYLAFVEGVVEDVTKRHEAERALRESQEMLRLVLDNIPQLVS 646

Query: 467 IINREGIILSTNRAVSKLFGYPV-EDILRKPFTVF-LEQNTPSVMNHYLTEILSLDLRQT 524
             ++    +  NRA    FG+    D++ +      L       +     +++  +  + 
Sbjct: 647 WKDKALRYMGANRAFIDFFGFDGLADLMGRDDAALPLRPEDVDAVRATDIDVMHHN--RP 704

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEK 580
           +             + L I    L       +    T  D+++    + +L  ++K+   
Sbjct: 705 VAGELAARNVRGLDVLLEIKKVPLHDDKGAVVGVLSTAEDVTQKVSLERQLLQSQKM--- 761

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
                      ++H+    LT+II  +E+          +    +    + ++G     +
Sbjct: 762 --EAIGTLAGGIAHDFNNILTSIINSTELAL---MDMAPDDPMEDDLRRVLKAGERGSRL 816

Query: 641 VNDLLDISKI-ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA 699
           V  +L  ++  ++G     F P+++ + V+EA  L++       I I     +      A
Sbjct: 817 VKQILSFTRPSQAG-----FAPINVADVVNEAAGLIRASLPR-NIKIVVETPDAPVACRA 870

Query: 700 DLRSVKQIALNILSNAIHFT-PSGGQIIIS-------------TTHTSNEEVILRVRDTG 745
           D   + QI +N+ +NA     P+GG + +                  +     + V DTG
Sbjct: 871 DPTQLHQIVMNLCTNAFQAMRPTGGVLALRLTEDSLDEDQAGQVGTRAGRCARITVADTG 930

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
            G+    ++K   PF     S + + EGTGLGL + + +V ++ G   + S P + T+ +
Sbjct: 931 PGIAGDIVDKIFDPFF----STKQKNEGTGLGLAVVRGIVKSHRGGVRVTSAPGEHTVFD 986

Query: 806 IIFPLYDT 813
           I  PL D 
Sbjct: 987 IFLPLLDE 994



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/325 (8%), Positives = 84/325 (25%), Gaps = 24/325 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN---HIGDLLKRQNT 142
            + +   G   +++  +   +G      +  R  D+ ++L          I   +    T
Sbjct: 517 IFRMTPDGAAVDVNPAMLSMLGVDDLDTLLRRRGDMVEVLFGGRERFTALIDSAVDEDAT 576

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF--GIVHVNRVDNDPRALGKRL 200
              +T     +   +   + +  +       +  G+  F  G+V      ++     +  
Sbjct: 577 AQFETRFVRPDARQVTANVTIRLVA------DPEGYLAFVEGVVEDVTKRHEAERALRES 630

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSP----PPHLRMKNKVSSLTEYYAHKDDVLKT 256
            +    + +      S + +                   + + +         + + +  
Sbjct: 631 QEMLRLVLDNIPQLVSWKDKALRYMGANRAFIDFFGFDGLADLMGRDDAALPLRPEDVDA 690

Query: 257 EKYPLLTSEE--SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
            +   +        +  +     +       +     L ++       LS     +    
Sbjct: 691 VRATDIDVMHHNRPVAGELAARNVRGLDVLLEIKKVPLHDDKGAVVGVLSTAEDVTQKVS 750

Query: 315 FDEGENLTP--ETVDKCPIPFFVYSHGNLF--YANPSFLLLTKYKSVDDIEIAGGLSTLL 370
            +     +   E +         +   N+     N + L L      D +E    L  +L
Sbjct: 751 LERQLLQSQKMEAIGTLAGGIA-HDFNNILTSIINSTELALMDMAPDDPME--DDLRRVL 807

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIA 395
            A +       + +   R  +   A
Sbjct: 808 KAGERGSRLVKQILSFTRPSQAGFA 832


>gi|163783845|ref|ZP_02178825.1| sensor histidine kinase HpkA [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880894|gb|EDP74418.1| sensor histidine kinase HpkA [Hydrogenivirga sp. 128-5-R1-1]
          Length = 338

 Score =  283 bits (724), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 70/352 (19%), Positives = 153/352 (43%), Gaps = 36/352 (10%)

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
           L+   +GI +I+ +  +   N+ V  L      +   K F   ++ N       YL  I+
Sbjct: 21  LDYLKEGIIVIDEDKTVNYANKYVENLLNIKEPE--GKHFADVIKNN-------YLYSII 71

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI 577
           + +  + +++  +    ++K   +++        +   + + DI+               
Sbjct: 72  AHEYDKDVQEEIII---DDKKFLVKV----YHIDNKKFVHLTDIT--------------P 110

Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
            E     K DF++ VSHE++TP+  + G  E ++ +      +    ++ +   +  N +
Sbjct: 111 FEVYKQAKKDFVSNVSHELKTPIAVLKGVIETLEAEE----NDKGKKKFISMAQKRINQM 166

Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697
             ++NDLL I+++ES +  +    ++L   + +    +     EK +        N  +I
Sbjct: 167 NTLINDLLIIARLESKEDKIIKTNINLKRFIDQIYEDLSHLTQEKNVKFYNKVNENF-KI 225

Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757
             D + +  +  N++ NAI +    G++ +       +  ++ V+DTG+G+    L    
Sbjct: 226 YGDEKKLSILLKNLIENAIKYNKENGKVEVK-GFLDKDYTVIEVKDTGIGIPKEALPLIF 284

Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           + F ++  S+     GTGLGL + K + +A+ GK  + ST  KG+  ++  P
Sbjct: 285 ERFYRVDKSRSRNVGGTGLGLSIVKHIAEAHKGKVSVESTLGKGSSFKVYLP 336


>gi|163792358|ref|ZP_02186335.1| PAS/PAC Sensor Signal Transduction Histidine Kinase [alpha
           proteobacterium BAL199]
 gi|159182063|gb|EDP66572.1| PAS/PAC Sensor Signal Transduction Histidine Kinase [alpha
           proteobacterium BAL199]
          Length = 528

 Score =  283 bits (724), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 104/317 (32%), Positives = 173/317 (54%), Gaps = 5/317 (1%)

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK---EEKLLSLRIIIKKLPFSSCY 554
                    + +    + +++  L   ++++ L + +   +    ++R     L  +S  
Sbjct: 172 ASLWPTFFETALVTMFSALIAAGLYLGIDRVVLRALRHALDHLQTAVRERDSALQETSDA 231

Query: 555 SLTM-HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
              +    +  K    +LS  +  A      KS FLA +SHE+RTPL AIIGFSE++  Q
Sbjct: 232 LALLARQNTRLKAASEELSRTRDAALTADRSKSMFLAAMSHELRTPLNAIIGFSEIMARQ 291

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
            +GP+G+ +Y +YAN I  SG+ +L +++D+LD+S++E+GK+ L  EP+ + E +     
Sbjct: 292 LYGPIGHAKYRDYANDIRSSGDHLLALIDDVLDLSRVEAGKLVLRREPLDVVEQIESCCR 351

Query: 674 LVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
           LVQ  A +  I +R + A N    IL D    +QI LN+L+NA+ FT +GG + +     
Sbjct: 352 LVQGRATDSGIDLRFAPAANPSATILGDRVRFRQILLNVLTNAVKFTDAGGSVQVDIGDD 411

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
           +   V++RV DTG+GM++ +LE+  +PF Q   S     EG GLGL L++A+V  + G  
Sbjct: 412 TAGTVVIRVADTGIGMSDDDLERVFRPFEQAGVSGARAVEGVGLGLALSRALVREHDGTL 471

Query: 793 YIFSTPAKGTLIEIIFP 809
            I S P +GT + + FP
Sbjct: 472 NIASAPGRGTTVTLSFP 488


>gi|78358273|ref|YP_389722.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio desulfuricans
            subsp. desulfuricans str. G20]
 gi|78220678|gb|ABB40027.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio desulfuricans
            subsp. desulfuricans str. G20]
          Length = 1151

 Score =  283 bits (724), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 83/529 (15%), Positives = 170/529 (32%), Gaps = 48/529 (9%)

Query: 306  RNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364
                         E       +  P+  F +    +    NP+   +  +++ D +    
Sbjct: 517  TARRRAEDSLRAAEEKYRSIFEGSPLGIFRIRPRDSFIDLNPALARMAGFENPDQLVQTL 576

Query: 365  GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
                    P+  D    +      S    I      HT       ++          ++ 
Sbjct: 577  --------PQDIDRLLEQMAATSSSSGDVIDFE---HTFTRGDGTAITAHITLRVARDRN 625

Query: 425  PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
             + +   G        ++ ++ +      L  +L+     ++  +     +  NR+ ++ 
Sbjct: 626  GDIVLLEGYAENVTQRKLAEQALSESQRMLQLVLDNIPQLVSWKDASLRYIGANRSFAQF 685

Query: 485  FGYPV-EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
            FG    ED + +     L     ++      E +              +  + K + L  
Sbjct: 686  FGIAELEDAIGRTDVEILPDEAQALRLREEDEEVIRSNTPRYRYKWSTTAADGKSVWLET 745

Query: 544  IIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                L     + +    T  D+++    + +L  ++K+              +SH+    
Sbjct: 746  NRVPLHDEQGHVVGLLTTAEDVTQKINLERQLLQSQKM-----EAIGTLAGGISHDFNNI 800

Query: 600  LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
            LT+II   E+  +                   ++      +V  +L  S+         F
Sbjct: 801  LTSIINSVELALSDVEAASIT---FNDLMRALKAAQRGSHLVKQILTFSRPSVEG----F 853

Query: 660  EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719
                ++EA++EA+ L++       I IR +       I AD   + Q+ +N+ +N+    
Sbjct: 854  VTTDINEALNEAVGLIKASLPR-NIEIRLAVPPRPSFIHADPTQIHQVIMNLCTNSFQAL 912

Query: 720  PS-GGQIIISTTHTS-------------NEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
               GG + I+                     + L V D G G+    L+K   PF     
Sbjct: 913  RETGGAMDINLEQEPVPEETAQELAISAGNYLKLTVSDNGPGIPQVILDKIFDPFFTTKG 972

Query: 766  SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
                + EGTGLGL +   +V A+ G   + S P + T  E+  P+ D  
Sbjct: 973  ----KTEGTGLGLAVVHGIVKAHRGAVRVSSDPFRRTAFEVWLPMLDAE 1017



 Score = 50.8 bits (120), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 74/235 (31%), Gaps = 9/235 (3%)

Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
            + +     VDDI I            + D N ++ + + +     + A ARL       
Sbjct: 306 AMQVLDGTPVDDIPIMSDPEAADSEAFIFDYNELRRLFITQ---EQLPAGARLINEPSRF 362

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
                  F     +      +    +    ++ R  ++K++ ++  L  +++     I  
Sbjct: 363 YELNKQVFWTIIISMVLLSVILVVLVMN-ILEKRRVEQKIKDQLSFLRLLMDTIPLPIFT 421

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT-EILSLDLRQTLE 526
            +  G  L  N+A    FG   + +L        +      +   +  ++L     +  +
Sbjct: 422 KDTTGSFLQCNKAFEDFFGVDRQSLLG--LAGNPDNLAVRALTDPVDVDMLRRPSVEIYD 479

Query: 527 KITLGSTKEEKLLSLR--IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579
           K   G     + + L                  + D +  ++ ++ L  A++   
Sbjct: 480 KTIEGPDGLPRNIILHKATHNNARGEVVGLVGVVFDYTARRRAEDSLRAAEEKYR 534



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/248 (6%), Positives = 50/248 (20%), Gaps = 20/248 (8%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + I       +++  L +  G      +   L        ID    + + +   ++  G
Sbjct: 544 IFRIRPRDSFIDLNPALARMAGFENPDQLVQTL-----PQDID---RLLEQMAATSSSSG 595

Query: 146 KTTLWP---IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
               +      G    +   +       RN +     G+                    +
Sbjct: 596 DVIDFEHTFTRGDGTAITAHITLRVARDRNGDIVLLEGYA--ENVTQRKLAEQALSESQR 653

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSP----PPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
               + +      S +                     +++ +          +      +
Sbjct: 654 MLQLVLDNIPQLVSWKDASLRYIGANRSFAQFFGIAELEDAIGRTDVEILPDEAQALRLR 713

Query: 259 YPLLTSEESSLPEQE---DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
                   S+ P           +      +     L +        L+     +     
Sbjct: 714 EEDEEVIRSNTPRYRYKWSTTAADGKSVWLETNRVPLHDEQGHVVGLLTTAEDVTQKINL 773

Query: 316 DEGENLTP 323
           +     + 
Sbjct: 774 ERQLLQSQ 781


>gi|41016068|dbj|BAD07400.1| histidine kinase [Cochliobolus heterostrophus]
          Length = 682

 Score =  283 bits (724), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 81/314 (25%), Positives = 133/314 (42%), Gaps = 29/314 (9%)

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII------KKLPFSSCYSLTMHDISEWK 565
            L  +     R +         K+       + I       +      +  T  DI++ K
Sbjct: 13  ILRVVKDAHGRASYSTEVRLRNKDGDYRWHLVRILLEKSLAETSDEETWYGTATDINDHK 72

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
             +  L       ++    KS FL+ +SHEIRTPL  I G    + +       N   +E
Sbjct: 73  LLEQTL-------KETMDAKSKFLSNMSHEIRTPLNGISGMVNFLLDSVL----NTEQLE 121

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           + N I  S + +L+++ND+LD+SK+E+G + L  E + L   + E   L    A +K + 
Sbjct: 122 HVNIIKASTDSLLNLINDILDLSKVEAGMIKLSMEWLHLPSLLEEVNDLNMGLAIQKGLE 181

Query: 686 IRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-------- 736
           +       +P  +  D   ++Q+ LN++ NAI FT  G +I I      ++         
Sbjct: 182 LNYLVDEGVPAEVKGDKFRIRQVLLNVVGNAIKFTEHG-EIFIRCKLQPSDRSRPLKENE 240

Query: 737 --VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
             +   V DTG G T+ E +   K F QI  S   +  GTGLGL ++   V+ + G+   
Sbjct: 241 TMIRFEVVDTGQGFTDAEAKYLFKRFSQIDASSTRQHGGTGLGLAISMQFVELHGGRMDA 300

Query: 795 FSTPAKGTLIEIIF 808
            S P KG+      
Sbjct: 301 RSAPGKGSTFFFTI 314


>gi|153836688|ref|ZP_01989355.1| RscS; sensor kinase protein [Vibrio parahaemolyticus AQ3810]
 gi|149750037|gb|EDM60782.1| RscS; sensor kinase protein [Vibrio parahaemolyticus AQ3810]
          Length = 785

 Score =  283 bits (724), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 75/277 (27%), Positives = 132/277 (47%), Gaps = 8/277 (2%)

Query: 537 KLLSLRIIIKKLPFSSCYSLTMH-DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
           +   L + +  +     +   +   +   KQ  ++L      AE+ +  KS FLA +SHE
Sbjct: 221 RFTWLFVFVAVMLLVGSFLYQLQYRMHNLKQLNSELEAETDKAERAAKAKSSFLAAMSHE 280

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           +RTP+  ++G S++I  +   P+      E+   I  SG  ++ I+ND+LD SK+E  K+
Sbjct: 281 LRTPMNGVLGISQLIAEETKEPVT----KEHIKVILDSGQHLMTILNDILDFSKVEENKL 336

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILADLRSVKQIALNILSN 714
            L   P  L++ ++   S +Q   +EK I +       N      D   ++QI  N+  N
Sbjct: 337 ELEKAPFHLEQVLTPVCSAIQPLIDEKSIELIVENDVPNNTEFTGDCARLRQILFNLAGN 396

Query: 715 AIHFTPSGGQIIISTTHT-SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
           A+ FT  G  ++I T     ++++++ V DTG+G+   +  +    F Q  +S   R  G
Sbjct: 397 AVKFTNEG-HVLIRTELNGEDKQLLIIVSDTGIGIAPDKQGRVFNSFEQADSSTTRRFGG 455

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           TGLGL + K + +   G   + S    GT   +  P+
Sbjct: 456 TGLGLAIVKKLTELMGGSITLKSVEGVGTQFIVTLPI 492


>gi|168180831|ref|ZP_02615495.1| sensory box histidine kinase [Clostridium botulinum NCTC 2916]
 gi|182668359|gb|EDT80338.1| sensory box histidine kinase [Clostridium botulinum NCTC 2916]
          Length = 702

 Score =  283 bits (724), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 90/496 (18%), Positives = 183/496 (36%), Gaps = 18/496 (3%)

Query: 322 TPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
               ++       V+     L   N +   + + K    ++I   ++           N 
Sbjct: 184 LNNVINNISEGILVFDKHSKLILWNKAIEQIGEMKIKKILDIKEIINEYDIYILDDHKNM 243

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
              +     D         L  ++ +      + +      ++  E +          D 
Sbjct: 244 KYKIKKMNPDYNSSVKDLLLKLVKKDTNKIKYIEYNSNPIMDENNEILYTISSIKNVTDL 303

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPV-----EDILR 494
             ++   E     +  +++     +A+++  +      N    +L           ++  
Sbjct: 304 IESQIISEERAEFIKYVVDCIELPLAVLDYPDLTYKLVNERYEELVERLHTKKIKGNLFG 363

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQ--TLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
                   +         L ++    +++     K  +  + EE+   +R I  +     
Sbjct: 364 NTVENIFRKEEFKEQLEVLQKMKDGTIKEYTFSPKKFILQSGEERFFKVRYIYHETKNKK 423

Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
              +   D++E  +   +L       EK +  K +F   +SHE+RTPLT I    + +  
Sbjct: 424 RVHIHGSDVTEEFKSNLEL-------EKVNKLKDEFFTIISHELRTPLTIIYSSLQ-LAY 475

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
             +    N    +    I+++   +L ++N++LDISK E+G + L+ E   +       +
Sbjct: 476 DIYPEDINLNIDKILKRINQNTARLLKLINNILDISKAEAGFLTLNNEYFDIVLETENIV 535

Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
           + +  YAN K I +          +  D    ++I LN+LSNA+ FTP    I ++    
Sbjct: 536 NSITNYANSKNINLIFDTTKEEEEVWIDKDKYERILLNLLSNAVKFTPENKSIYVTLKIY 595

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
            N    L V+D G G+   +++     F Q+ +S     EGTG+GL L K +VD   G+ 
Sbjct: 596 KNNF-KLIVKDEGRGIPKEKIDCIFNRFAQVNSSLSRSAEGTGIGLSLVKKIVDLMDGEI 654

Query: 793 YIFSTPAKGTLIEIIF 808
            ++S   KGT   +  
Sbjct: 655 KVYSILGKGTTFTVKI 670


>gi|158337906|ref|YP_001519082.1| two-component hybrid sensor and regulator [Acaryochloris marina
           MBIC11017]
 gi|158308147|gb|ABW29764.1| two-component hybrid sensor and regulator [Acaryochloris marina
           MBIC11017]
          Length = 888

 Score =  283 bits (724), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 73/259 (28%), Positives = 138/259 (53%), Gaps = 18/259 (6%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
            L  AK+ A+  ++ KS FLA +SHE+RTP+ A+IG + ++ N       + +  ++   
Sbjct: 359 ALVQAKRDADTANTAKSQFLANMSHELRTPMNAVIGMTGLLLNTDL----DLQQADFVET 414

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I  SG+ +L ++ND+LD SKIE+GK+    +P  L   + +A+ +V   A +K + +   
Sbjct: 415 IRSSGDALLSLINDILDFSKIEAGKLEFENQPFDLRICIEQALRIVAPRAVDKSLELAYL 474

Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----------VI 738
           F  + P  I+ D+  ++QI +N+L+N + FT +G ++++     + +           + 
Sbjct: 475 FEPDTPEWIIGDVTRLRQIIVNLLTNGVKFTDTG-EVVVYIQDVTADHAAPVRKGHHILQ 533

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           + V+DTG+G+    +++  K F Q+  S   +  GTGLGL +   + +   G+ ++ S  
Sbjct: 534 IVVKDTGIGIPADRMDRLFKSFSQVDASTTRKYGGTGLGLAICHRLCELMGGRMWVESDV 593

Query: 799 AKGT--LIEIIFPLYDTSH 815
            KG+     I  P+ D + 
Sbjct: 594 GKGSSFCFTISVPIADPAQ 612


>gi|152985475|ref|YP_001347049.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           PA7]
 gi|150960633|gb|ABR82658.1| probable sensor/response regulator hybrid [Pseudomonas aeruginosa
           PA7]
          Length = 918

 Score =  283 bits (724), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 76/258 (29%), Positives = 130/258 (50%), Gaps = 10/258 (3%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I+  K+E  +   A + A  E+  KS FLA++SHEIRTPL  ++G  +++++        
Sbjct: 384 INALKEEGFRSRQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPLDRG-- 441

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
                    I  SGN ++ ++ND+LD ++IESGK+ L      L+E +S+ ++L    A 
Sbjct: 442 --QAACVETIASSGNALMSVINDILDYARIESGKLQLERIDFDLEELLSDTLALFGAQAR 499

Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT----SNE 735
           EKR+ +       +PR +  D   ++Q+  N+L NA+ FT  G  + +           E
Sbjct: 500 EKRLRLHLGLDRGVPRRLNGDPTRLRQVLTNLLGNALKFTAEG-HVALRVQRRFDEAGRE 558

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            ++  V D+G+G++        + F Q  +S   R  G+GLGL +++ +V    G+  + 
Sbjct: 559 RLLYSVSDSGIGISAQAQATLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVS 618

Query: 796 STPAKGTLIEIIFPLYDT 813
           S P KGT   +  PL   
Sbjct: 619 SEPGKGTRFSVDLPLSPA 636


>gi|265990697|ref|ZP_06103254.1| integral membrane sensor signal transduction histidine kinase
           [Brucella melitensis bv. 1 str. Rev.1]
 gi|265994529|ref|ZP_06107086.1| integral membrane sensor signal transduction histidine kinase
           [Brucella melitensis bv. 3 str. Ether]
 gi|262765642|gb|EEZ11431.1| integral membrane sensor signal transduction histidine kinase
           [Brucella melitensis bv. 3 str. Ether]
 gi|263001481|gb|EEZ14056.1| integral membrane sensor signal transduction histidine kinase
           [Brucella melitensis bv. 1 str. Rev.1]
          Length = 532

 Score =  283 bits (724), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 92/349 (26%), Positives = 168/349 (48%), Gaps = 4/349 (1%)

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
             ++ EGI+ S +   +KL G   + +        +           L ++ +    + +
Sbjct: 134 FGLDIEGIVSSVDGETAKLLGVQPKMLEGTALIDRVHVADRVQYLSLLADLRAGMATRKV 193

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
           +            +      +        +L    +   ++  ++++  K   E E   K
Sbjct: 194 DVRLRSIE-NGNPVFRAYRFEGAGSDRAITLIGRSLEGEQKLLDEIAMLKAELESERIGK 252

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
              LA VSHE+RTPL +IIGFS+++ ++  G L + R  EYA  I +SG+ +L++VN +L
Sbjct: 253 GRLLATVSHELRTPLNSIIGFSDMLTHEIGGKLASDRQREYAGLIHQSGHYLLELVNAVL 312

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
           D S++E+G  ++  +     +AV    +++   A +K +       N +  ++AD R+V+
Sbjct: 313 DNSRLETGTYSIAPQSFVFRDAVEMCTAVMLPQAEKKGVDFCHRVGNGVGELVADRRAVQ 372

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNE---EVILRVRDTGVGMTNYELEKAMKPFGQ 762
           QI LN+ +NA+ FT SGG + I       +    +   V DTG+G+   +L++   PF +
Sbjct: 373 QILLNLATNAVKFTQSGGCVTIDAARVMADGCPMLEFSVSDTGIGIEPEDLQRIGTPFVR 432

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
             NS     EG+GLGL + K +V+ + G   + S P +GT++ I  PL 
Sbjct: 433 AGNSYTQAQEGSGLGLSVVKGLVERHQGSMQLKSRPGEGTVVMIRLPLA 481


>gi|158338165|ref|YP_001519342.1| two-component hybrid histidine kinase sensor and regulator
           [Acaryochloris marina MBIC11017]
 gi|158308406|gb|ABW30023.1| two-component hybrid histidine kinase sensor and regulator
           [Acaryochloris marina MBIC11017]
          Length = 417

 Score =  283 bits (724), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 96/418 (22%), Positives = 186/418 (44%), Gaps = 29/418 (6%)

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470
           L +              + +  +E +  +    +  + +   Q     +       + +R
Sbjct: 10  LLVIDDDEVDRMAVRRALGKTNLEVDLSEAEDGEAALSLLKNQQ---FDCIFVDFLLPDR 66

Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530
           +G  LS  + + +L        +  PF V   Q    +       ++       L K  +
Sbjct: 67  DG--LSLAKQLQRL-------QVDTPFVVLTGQGDEQIAVD----VMKAGAADYLAKHRI 113

Query: 531 GSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS--EWKQEKNKLSHAKKIAEKESSH---- 584
             T   + +   I + +   ++  +     I+  + +Q+  +L+H +   E ++      
Sbjct: 114 TPTTLARTIRSAIRLHRAEQAARAAKQKLQITNDQLRQQNEELAHHRAQIEAQNQELIKA 173

Query: 585 ---KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
              KS+F+A +SHE+RTP+ AI+GFS+++  Q   PL   + ++    I  +   +L +V
Sbjct: 174 YRLKSEFIATISHELRTPMNAIMGFSQLLLRQYPDPLS-EQQLDMVQRIFDNSRNLLTMV 232

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA-- 699
           N++LD SKIE+ ++ LH EP  L   +   I  +Q  A EK + ++      +  I    
Sbjct: 233 NEVLDFSKIEANRLELHPEPFQLSVPILATIQELQALAVEKALTLKAEIPETLQSIQLTN 292

Query: 700 DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKP 759
           D   ++++ +N++SNAI FT +G ++ +       +++ + V DTG+GMT  +L     P
Sbjct: 293 DPECLRRVLVNLISNAIKFTEAG-EVTLQLHQPQPDQIKISVVDTGIGMTPEQLSTIFDP 351

Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
           F Q   S      GTGLGL + +++V A  G+  + S P  G+   +  PL   + P+
Sbjct: 352 FCQADQSLTRHHSGTGLGLAITESLVKAMQGQISVSSQPGVGSTFTVELPLQVQTLPN 409


>gi|32477451|ref|NP_870445.1| sensory histidine protein kinase [Rhodopirellula baltica SH 1]
 gi|32448002|emb|CAD77522.1| sensory histidine protein kinase [Rhodopirellula baltica SH 1]
          Length = 718

 Score =  283 bits (724), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 90/478 (18%), Positives = 193/478 (40%), Gaps = 33/478 (6%)

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
                +      P++  + AI+   +            R   +         +  +P E 
Sbjct: 117 GERFLIEDARVDPRVVAHPAIEEYGIVSYAG--FPIRTRSGEVL---GTLCVVDIVPREW 171

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ-LCSILEATSDGIAIINREGIILSTNR 479
                E + +     E     I   + E +  +   ++++A+   + +++ +G +   N 
Sbjct: 172 TEDELETLRELSASVESEIELIAAAERERDHARMFQTMIQASPLSVIVMDYDGRVELWNE 231

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQ--NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
           A   +FG+   ++L  P  +  +   +    +   + +        T       +  E +
Sbjct: 232 ASEAIFGWTSAEVLGYPLPIIPDHKLDECQRIRDAVGDGSVFRCVDTYRAKGEDANGERR 291

Query: 538 LLSLRIIIKKLP----FSSCYSLTMHDIS-------EWKQEKNKLSHAKKIAEKESSHKS 586
            + + +    L      S    L + D++       E ++   +L   K +  +    K+
Sbjct: 292 TVHVNVSAVSLHRYDGHSDRILLIIDDVTQSHADTLERERLFRELQKEKALLSEMDERKN 351

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
            FLA ++HE+R PLT I    +++   RF      +  E +  ++   + ++ +++DL+D
Sbjct: 352 RFLALLAHELRNPLTPIGNAVDLL---RFAAKDPNQVNEISTVLESQVHQLVRLIDDLMD 408

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVK 705
           +S+I  G+++L  E VS+ + V+ +   V+   NE    +           +  D   + 
Sbjct: 409 VSRITRGRIDLQRETVSIHDIVANSCRAVESLCNEMGHELIRRTDPEQSLHVHGDYVRLT 468

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           Q+  N+L+NA  +TP  G+I IS       +V + V+D GVG+     +   + F Q+  
Sbjct: 469 QVVTNLLNNACKYTPPSGRIEISCGQVD-GQVEIAVKDNGVGIPPEHRKGIFEMFTQVDE 527

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYI-----FSTPAKGTLIEIIFPLYDTSHPHD 818
           + +    G G+GL L K +V+ + G+  +      ST   G+   I  P  D + P++
Sbjct: 528 TLKDSRGGLGIGLTLVKQLVELHGGRVSLVDSDDTST---GSEFRIHLPCLD-AKPNE 581



 Score = 43.9 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 75/241 (31%), Gaps = 12/241 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D  G ++  +E      G  + +++G  L  +     +D    I D +   + +    T
Sbjct: 220 MDYDGRVELWNEASEAIFGWTSAEVLGYPLP-IIPDHKLDECQRIRDAVGDGSVFRCVDT 278

Query: 149 LWPIE----GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
                    G    V ++++A+ ++  +          I+ +        A     ++ F
Sbjct: 279 YRAKGEDANGERRTVHVNVSAVSLHRYDGHSD-----RILLIIDDVTQSHADTLERERLF 333

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
             L + K   S +++ K    +  +    LR                     +   + T 
Sbjct: 334 RELQKEKALLSEMDERKNRFLALLAHE--LRNPLTPIGNAVDLLRFAAKDPNQVNEISTV 391

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
            ES + +        ++     +    LQ  +    + +++      S   + G  L   
Sbjct: 392 LESQVHQLVRLIDDLMDVSRITRGRIDLQRETVSIHDIVANSCRAVESLCNEMGHELIRR 451

Query: 325 T 325
           T
Sbjct: 452 T 452


>gi|88801182|ref|ZP_01116725.1| GGDEF family protein [Reinekea sp. MED297]
 gi|88776085|gb|EAR07317.1| GGDEF family protein [Reinekea sp. MED297]
          Length = 773

 Score =  283 bits (724), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 74/339 (21%), Positives = 149/339 (43%), Gaps = 11/339 (3%)

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
            L+G     ++             + +   +  ++S+ L        +        +++ 
Sbjct: 305 ALYGISSGIVMALKGHHIARYYLIANVAFIIPALISIGLNSLPNSTLMIEHIGLFAVAIE 364

Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
           +I+  L  S   SL   + S       +       A+     K  FLA VSHE+RTPL A
Sbjct: 365 VILLSLVISYQLSLVYKEKSANLIAAEEALTI---ADNAVRAKERFLANVSHELRTPLNA 421

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           I G  +++ +       +    E  + I  S + +L ++ND+LD++K+ +  + +  +P 
Sbjct: 422 IQGSVDLLSH----SSQDESLKEPIDMIQHSSSFLLFLINDILDLAKLNADMLTIDEQPF 477

Query: 663 SLDEAVSEAISLVQ-LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTP 720
           +L  ++ +  S+     AN  +     + + ++P  I+ D + ++Q+  N+LSNA  FT 
Sbjct: 478 NLHGSIQQICSIYSNSLANNAQTRFELTISPDVPTWIVGDEKRLEQVIANLLSNAFKFTE 537

Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
            G ++    T      +++ V+DTG+G+    L+     F Q  +S   +  GTGLGL +
Sbjct: 538 KG-KVTCRLTLKDTHTLMISVQDTGIGIKPDNLDAMFAAFTQADSSISRKYGGTGLGLRI 596

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLY-DTSHPHD 818
           +  +++   G+ +  S   +G+      PL    + P +
Sbjct: 597 SSKIIEQMGGEIWAESETGQGSTFTFTLPLVLAEAQPEN 635


>gi|303327059|ref|ZP_07357501.1| probable hybrid sensory kinase [Desulfovibrio sp. 3_1_syn3]
 gi|302863047|gb|EFL85979.1| probable hybrid sensory kinase [Desulfovibrio sp. 3_1_syn3]
          Length = 981

 Score =  283 bits (724), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 90/337 (26%), Positives = 157/337 (46%), Gaps = 21/337 (6%)

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYL--TEILSLDLRQTLEKITLGSTKEEKLLSLRI-- 543
           P  +++R   T  +       +   +       L  R  +E+        E+  ++ I  
Sbjct: 362 PYREVIRNWATENIVPEDRQTVLEKMSPKHFSDLAARGIMEEELEYRILSEREHAVFIKQ 421

Query: 544 --IIKKLPFSSCY--SLTMHDISEWKQEK----NKLSHAKKIAEKESSHKSDFLARVSHE 595
              + K   S      L   D++E + ++      L  A + A + +  KS+FL+ +SH+
Sbjct: 422 NITLTKDKRSGNIAGLLIAKDVTELRLKESLYIQALKDASESANQANKSKSEFLSSMSHD 481

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           IRTP+  IIG +E+    R       +  +  + I  S NL+LD++N++LD+SKIESG++
Sbjct: 482 IRTPMNGIIGMTEIA---RVNIQDTAKVQDCLHKITMSSNLLLDLINEVLDMSKIESGRL 538

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSN 714
            L+    ++ E V    + VQ    EK   +     + +    + D   ++QI +N++SN
Sbjct: 539 ALNEREFNIAELVETLFTAVQPLLKEKNHTLNVHINDVVHEDFIGDPLRLQQIFINLMSN 598

Query: 715 AIHFTPSGGQIIISTTHTSNE-----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
           AI +TP GG I  S +   +      +    +RD G+GMT   LE+   PF +   ++Q 
Sbjct: 599 AIKYTPEGGNIDFSISEFHDNSPAYSKFQFILRDNGMGMTPEFLERLFLPFERADEARQK 658

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
              GTGLG+ + + +V    G   + S P KGT   +
Sbjct: 659 NIAGTGLGMAITRNIVHMLGGDITVASEPGKGTTFTV 695


>gi|258405063|ref|YP_003197805.1| PAS/PAC sensor hybrid histidine kinase [Desulfohalobium retbaense
           DSM 5692]
 gi|257797290|gb|ACV68227.1| PAS/PAC sensor hybrid histidine kinase [Desulfohalobium retbaense
           DSM 5692]
          Length = 803

 Score =  283 bits (724), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 86/426 (20%), Positives = 162/426 (38%), Gaps = 32/426 (7%)

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVD-TRINKRKMEIEVMQLCSILEATSDGIA 466
            +   +   P   ++     +          +     ++ ++     + SIL +   GI 
Sbjct: 252 GSLCVVFQSPLAPSDNDKRFLSTIAAAISREEGRHQAEQAVQASNELISSILRSAPVGIG 311

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
           +++R+  I+  N  +  + GY  E++L +  +VF   N        +             
Sbjct: 312 LVDRDRTIVEVNDRLCAMTGYTKEELLHQHASVFYPSNDEFERVGNIKYEQLHG-EGYGN 370

Query: 527 KITLGSTKEEKLLSLRII---IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
              +   K+  L+ +R+    +     S   + +  +IS  K  K + +  +    + + 
Sbjct: 371 VEAIWQRKDTSLIHVRLTSTLLDPQDPSRGVTFSALNISGEKLAKEEQAKLQAQLAQSNK 430

Query: 584 H--KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
                     ++H+    L  I G  E++  +          +     I +S +    +V
Sbjct: 431 MESLGRLAGGIAHDFNNVLHVISGNLEMMALRSNS--QQAVGLNRIQTIQKSIDRASQLV 488

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701
             +L  S+    K   + + V L+E V + + +++  +  K I I T   + +P I AD 
Sbjct: 489 QQMLLFSR----KAESYKQSVDLNEEVEQTLHILE-RSVPKMISIETFLPDGLPPISADP 543

Query: 702 RSVKQIALNILSNAIHFTPSGGQ--------------IIISTTHTSNEEVILRVRDTGVG 747
             V+Q+ LN+ SNA    P+GG+              + + T       + L V DTG G
Sbjct: 544 VQVEQVLLNLGSNAEAAMPAGGRFIVETSDIFLDHDFVRMHTEAKEGRYICLSVSDTGHG 603

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           M +  L     PF          G+GTGLGL     +V A+ G    +S P KGT   I 
Sbjct: 604 MDDKTLNHVFDPFFTTK----EIGKGTGLGLASVYGIVRAHDGFIRCYSEPGKGTTFHIY 659

Query: 808 FPLYDT 813
           +P+  T
Sbjct: 660 WPVVST 665



 Score = 70.8 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 38/427 (8%), Positives = 100/427 (23%), Gaps = 61/427 (14%)

Query: 76  FDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD 135
           F   P   +   ++D  G   + +      +G     +IG    ++     ++       
Sbjct: 13  FTYAPLPYQ---SLDCDGNFLDFNSAFMNVLGYEKNDLIGRNFSELLHPDWVEHFKENFP 69

Query: 136 LLKRQNTWYGKTT-LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR 194
             K      G    +   +G++  + +       ++   EF   R   I           
Sbjct: 70  RFKAVGEILGVEFEMIKKDGSS--ILVHFHGKIQHNELGEFE--RTHCIFQDVSSQRAAE 125

Query: 195 ALGKRLDKKFSHL--------HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV------ 240
              +R +++F+ +         + KK   ++      +        +    + +      
Sbjct: 126 IALRRSEERFAQINKVLLELGTDYKKNIHNLTALAGQMLGGTCALYNRLEGDLLCSVGQW 185

Query: 241 ---------------SSLTEYYAHKDDVLKTEKYPLLTSEESS----------------- 268
                                Y  KDDVL  E  P     ++                  
Sbjct: 186 KTPVDYDPCDFPEGHICYDVIYQQKDDVLVIEDLPRSIYAQTDPNVNKYNLQTYVGKCVF 245

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
             +        + Q          +  S  +                     L    +  
Sbjct: 246 CSDDPVGSLCVVFQSPLAPSDNDKRFLSTIAAAISREEGRHQAEQAVQASNELISSILRS 305

Query: 329 CPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
            P+    V     +   N     +T Y   + +     +      P   +   +  +   
Sbjct: 306 APVGIGLVDRDRTIVEVNDRLCAMTGYTKEELLHQHASV----FYPSNDEFERVGNIKYE 361

Query: 388 RSDRTCIAASARLHTIQWNRENSLA-MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
           +        +      + +       +T    +  +              +   +  + K
Sbjct: 362 QLHGEGY-GNVEAIWQRKDTSLIHVRLTSTLLDPQDPSRGVTFSALNISGEKLAKEEQAK 420

Query: 447 MEIEVMQ 453
           ++ ++ Q
Sbjct: 421 LQAQLAQ 427



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 17/140 (12%), Positives = 43/140 (30%), Gaps = 2/140 (1%)

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
             +  S+          ++ +G  L  N A   + GY   D++ + F+  L  +      
Sbjct: 6   ENKWESMFTYAPLPYQSLDCDGNFLDFNSAFMNVLGYEKNDLIGRNFSELLHPDWVEHFK 65

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII--KKLPFSSCYSLTMHDISEWKQEK 568
                  ++     +E   +       L+     I   +L           D+S  +  +
Sbjct: 66  ENFPRFKAVGEILGVEFEMIKKDGSSILVHFHGKIQHNELGEFERTHCIFQDVSSQRAAE 125

Query: 569 NKLSHAKKIAEKESSHKSDF 588
             L  +++   + +    + 
Sbjct: 126 IALRRSEERFAQINKVLLEL 145


>gi|218662726|ref|ZP_03518656.1| probable two-component sensor histidine kinase protein [Rhizobium
           etli IE4771]
          Length = 570

 Score =  283 bits (724), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 102/249 (40%), Positives = 154/249 (61%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I+E +  K+    A++ AE+ +  KS FLA +SHE+RTPL AI+GFSEV+  +  GPL N
Sbjct: 183 IAELEVAKSMSDEARRRAEEANLAKSRFLASMSHELRTPLNAILGFSEVMSAEVMGPLAN 242

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
           P Y EYA  I RSG  +LD++N++LD+S+IE+GK  L  E +SL +   + I +VQL A 
Sbjct: 243 PTYKEYAGDIHRSGQHLLDLINEILDLSRIEAGKYELSEEAISLLDITEDCIGMVQLRAR 302

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
            K I I   F   +P I AD +S++Q+ LN+LSNA+ FTP GG+I +    T+     + 
Sbjct: 303 AKNIAISDQFERQLPAIWADEKSMRQVVLNLLSNAVKFTPQGGEIHVKVGWTAGGGQYIS 362

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           ++D G G+   E+   +  FGQ   + +   +GTGLGLP+ +A++  + G+F + S   +
Sbjct: 363 IKDNGPGIPEEEIPVVLSAFGQGSIAIKSAEQGTGLGLPIVQAILAKHDGQFLLKSKLRE 422

Query: 801 GTLIEIIFP 809
           GT +  I P
Sbjct: 423 GTEVIAILP 431


>gi|213857465|ref|ZP_03384436.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Typhi str. M223]
          Length = 513

 Score =  283 bits (724), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 80/267 (29%), Positives = 132/267 (49%), Gaps = 7/267 (2%)

Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
            +     + D+S   + +  L    + AE+ S  KS FLA VSHE+RTPL  IIG  + +
Sbjct: 1   ENVAICVLVDVSTRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-L 59

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
              +  P G  R       ++ S +L+L I++D+LD SKIES ++ +     S  E ++ 
Sbjct: 60  LQTKELPKGVDR---LVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNH 116

Query: 671 AISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
             +        K++ +      ++P  +  D   ++Q+  N+LSNAI FT  G  I++  
Sbjct: 117 ITANYLPLVVRKQLGLYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDIG-CIVLHV 175

Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
                + + +RVRDTGVG+   E+ +   PF Q+    Q   +GTGLGL + + ++    
Sbjct: 176 RC-DGDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMD 234

Query: 790 GKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           G   + S P  G+   +  PLY   +P
Sbjct: 235 GDISVDSEPGMGSQFTLRIPLYGAQYP 261


>gi|186686383|ref|YP_001869579.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186468835|gb|ACC84636.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 762

 Score =  283 bits (724), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 87/525 (16%), Positives = 178/525 (33%), Gaps = 46/525 (8%)

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
                       E      +   P   FVY+          +  +    S   +E   G 
Sbjct: 126 ERQRADDALRHSEERFRVALKNSP--IFVYNQDMEL----RYTWVYNPPSGLTVEEILGK 179

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
             L   P               +    I     +     +      +T  P    +Q   
Sbjct: 180 QDLDIMPGEDAQRLTTIKRGVLTIG--IGMREEVSITIKDTTRYYDLTVEPLRNESQAIL 237

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEV-MQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
            +    I+  +    + +RK+  E   +  ++L+ T+D I + +    I+  N+    L+
Sbjct: 238 GVTCASIDISERQAALRERKLAEEKIREQAALLDVTTDAICVRDLNNQIIFWNKGAETLY 297

Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
           G+   +   K  T  L       +   L +  S       +      TK  K + +    
Sbjct: 298 GWKATEAWGKNATELLFDEPSPEIEAALLQATSKGK---WQGELTKLTKMGKEILVASRW 354

Query: 546 KKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
             +               DI++ K  + +L  A+++            + ++H++   LT
Sbjct: 355 TLVCSEQGKPKAILTVDTDITDKKHLEAQLFRAQRL-----ESIGTLASGIAHDLNNILT 409

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
            I+  ++++      P  + R       ++ +     D+V  +L  ++   GK       
Sbjct: 410 PILAGAQLL--PLKFPDADERTHHLLEILEINARRGADLVKQVLSFARGVEGK----RIT 463

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           + L   + E   +++       I I T    ++  +  D   + Q+ +N+  NA    P+
Sbjct: 464 LQLRHLIVEVAKILKETFPR-SIQISTDVLQDLWMVSGDSTQLHQVLMNLCVNARDAMPN 522

Query: 722 GGQIIIS--------------TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
           GG +IIS                      + + V DTGVG++   L++  +PF    +  
Sbjct: 523 GGSLIISAENLLIDENYARMNLEAKEGPYIAITVSDTGVGISKEILDRIFEPFFTTKD-- 580

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
              G+GTGLGL     ++ ++ G   ++S    GT  ++  P  +
Sbjct: 581 --VGKGTGLGLSTVLGIIKSHGGFVNVYSELGSGTSFKVYLPAVE 623



 Score = 43.1 bits (100), Expect = 0.21,   Method: Composition-based stats.
 Identities = 25/381 (6%), Positives = 78/381 (20%), Gaps = 33/381 (8%)

Query: 70  SENTFVFDPIPRTVRFTWNIDAHGYLKEI-SEELPKTIGNYAFKMIGMRLCDVSDILHID 128
           SE  F        + F +N D       + +       G    +++G +  D+       
Sbjct: 137 SEERFRVALKNSPI-FVYNQDMELRYTWVYNPP----SGLTVEEILGKQDLDIMPGEDAQ 191

Query: 129 PNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIV---- 184
               I   +        +     I+ T  Y  + +   P+ + ++   G     I     
Sbjct: 192 RLTTIKRGVLTIGIGMREEVSITIKDTTRYYDLTV--EPLRNESQAILGVTCASIDISER 249

Query: 185 -HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL 243
               R         +          +       +  +              +        
Sbjct: 250 QAALRERKLAEEKIREQAALLDVTTDAIC-VRDLNNQIIFWNKGAETLYGWKATEAWGKN 308

Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303
                  +   + E   L  + +     +    T    +      +  + +   +    L
Sbjct: 309 ATELLFDEPSPEIEAALLQATSKGKWQGELTKLTKMGKEILVASRWTLVCSEQGKPKAIL 368

Query: 304 SHRNHPSLSAYFDEGENLTPET--VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIE 361
           +     +   + +           +         +   N+                  + 
Sbjct: 369 TVDTDITDKKHLEAQLFRAQRLESIGTLASGIA-HDLNNIL--------------TPILA 413

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
            A  L           ++ ++ + +       +             +           + 
Sbjct: 414 GAQLLPLKFPDADERTHHLLEILEINARRGADLVKQVLSFARGVEGKRITLQLRHLIVEV 473

Query: 422 NQF--PENMPQNGIEPEDVDT 440
            +           I  + +  
Sbjct: 474 AKILKETFPRSIQISTDVLQD 494


>gi|304392331|ref|ZP_07374272.1| two-component sensor/response regulator hybrid [Ahrensia sp.
           R2A130]
 gi|303295435|gb|EFL89794.1| two-component sensor/response regulator hybrid [Ahrensia sp.
           R2A130]
          Length = 708

 Score =  283 bits (724), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 85/387 (21%), Positives = 168/387 (43%), Gaps = 29/387 (7%)

Query: 430 QNGIEPEDVDTRINKR-KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
            N    + ++   ++  ++        S+ EA  D +   NR+G +   N   S LF   
Sbjct: 107 ANAALADRLEGLEDRSWEIRESEELHRSVAEAFGDVLIQRNRDGDVRHANETYSSLFDQQ 166

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
                       L ++        +    +   R    +       +  ++         
Sbjct: 167 R---------FALPESDIDAGTRDIMVETTQGQRWFAWRDLPARDLQSGMM--------- 208

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                      DI+  K  +++L+ A   A+  S  KS FLA +SHE+RTPL  ++G ++
Sbjct: 209 ----GIRSIARDITARKNHEHELAAAAAAAQAASEAKSRFLATISHEVRTPLNGVMGVAQ 264

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
           ++         +    ++ + +  SG+ +L ++ DLLD +++E G +++  EPV L++ +
Sbjct: 265 LLARTPL----DATQRDHLSILKTSGDTLLALIEDLLDTARMEQGDLSIQTEPVKLEQLL 320

Query: 669 SEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIII 727
               +++   A  K + I T     +P  ILAD   ++Q+ +N+L NA+ FT  G  + +
Sbjct: 321 EGVAAMMASRAAAKSLPISTYIDPTLPASILADGGRLRQVLVNLLGNALKFTDQGS-VSL 379

Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
                S +E+ L V DTG G+ + + ++  +PF Q  +       G GLGL +++ +V  
Sbjct: 380 CAHRHSIDELCLVVSDTGPGIADKDRDRIFQPFVQTDDGSTRAHNGAGLGLAISRHIVVR 439

Query: 788 NMGKFYIFSTPAKGTLIEIIFPLYDTS 814
             G   + +    G++  +  PL +  
Sbjct: 440 MGGDISVSTGKDSGSVFTVTLPLVNAD 466


>gi|254693343|ref|ZP_05155171.1| sensor histidine kinase [Brucella abortus bv. 3 str. Tulya]
          Length = 609

 Score =  283 bits (724), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 91/349 (26%), Positives = 167/349 (47%), Gaps = 4/349 (1%)

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
             ++ EGI+ S +   +KL G   + +        +           L ++ +    + +
Sbjct: 211 FGLDIEGIVSSVDGETAKLLGVQPKMLEGTALIDRVHVADRVQYLSLLADLRAGMATRKV 270

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
           +            +      +        +L    +   ++  ++++  K   E E   K
Sbjct: 271 DVRLRSIE-NGNPVFRAYRFEGAGSDRAITLIGRSLEGEQKLLDEIAMLKAELESERIGK 329

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
              LA VSHE+RTPL +IIGFS+++ ++    L + R  EYA  I +SG+ +L++VN +L
Sbjct: 330 GRLLATVSHELRTPLNSIIGFSDMLTHEIGSKLASDRQREYAGLIHQSGHYLLELVNAVL 389

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
           D S++E+G  ++  +     +AV    +++   A +K +       N +  ++AD R+V+
Sbjct: 390 DNSRLETGTYSIAPQSFVFRDAVEMCTAVMLPQAEKKGVAFCHRVGNGVGELVADRRAVQ 449

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNE---EVILRVRDTGVGMTNYELEKAMKPFGQ 762
           QI LN+ +NA+ FT SGG + I       +    +   V DTG+G+   +L++   PF +
Sbjct: 450 QILLNLATNAVKFTQSGGCVTIDAARVMADGCPMLEFSVSDTGIGIEPEDLQRIGTPFVR 509

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
             NS     EG+GLGL + K +V+ + G   + S P +GT++ I  PL 
Sbjct: 510 AGNSYTQAQEGSGLGLSVVKGLVERHQGSMQLKSRPGEGTVVMIRLPLA 558


>gi|114707276|ref|ZP_01440173.1| probable two-component sensor histidine kinase protein [Fulvimarina
           pelagi HTCC2506]
 gi|114537157|gb|EAU40284.1| probable two-component sensor histidine kinase protein [Fulvimarina
           pelagi HTCC2506]
          Length = 507

 Score =  283 bits (724), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 103/249 (41%), Positives = 155/249 (62%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           ISE ++ +     A++ AE  +  KS FLA +SHE+RTPL AI+GFSEV+ N+ FGPLG+
Sbjct: 245 ISELERSRILSDEARRRAEDANRAKSQFLATMSHELRTPLNAILGFSEVMMNEIFGPLGS 304

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
           P Y EY   I  SG  +L ++N++LD+S++E+G+  L+ E V L    ++  S V+L A 
Sbjct: 305 PNYKEYLTDIHSSGKHLLGVINEILDLSRVEAGQYALNEEAVDLSRIAADCASTVRLRAE 364

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
           +KRI I+  F   +P +  D R+++QI LN+LSNA+ FTP  G+II+    T+     + 
Sbjct: 365 DKRIAIQMHFEEGLPALWGDERALRQIVLNLLSNAVKFTPKSGEIILRVGWTAGGGQYVG 424

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V D G G+   E+   +  FGQ  N+ +   +GTGLGLP+ +A+V  + G+F + S   K
Sbjct: 425 VSDNGAGIPQDEIPTVLASFGQGSNAIKNAEQGTGLGLPIVQALVKLHDGQFELSSREGK 484

Query: 801 GTLIEIIFP 809
           GT +  IFP
Sbjct: 485 GTDVIAIFP 493


>gi|148262506|ref|YP_001229212.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter
           uraniireducens Rf4]
 gi|146396006|gb|ABQ24639.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter
           uraniireducens Rf4]
          Length = 510

 Score =  283 bits (724), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 83/507 (16%), Positives = 160/507 (31%), Gaps = 24/507 (4%)

Query: 312 SAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
           +      E       ++       V   G     N  F  +  Y   +        +   
Sbjct: 16  TQELQASEAHFRAIFNQAAAGIALVELDGRWLLVNQKFCDIVGYPEAEL------RNMNF 69

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
                 D+       + R     I              + + +            E    
Sbjct: 70  QEITHPDDLPADLENIRRLLADEIQHCLFEKRYIRKDGSVVWVNLSISLVRTIDDEPHYF 129

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI-AIINREGIILSTNRAVSKLFGYPV 489
             +  +    R  +  +     +   +       I      EG  +  N    +L GY  
Sbjct: 130 IAVAEDVTVRRRVEEALRESEEKFSRVFRNAPIAITISTLAEGRFVEVNDTFERLSGYRR 189

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
           EDI+ +  T       P      L  +      + LE      T    +  L  +I +L 
Sbjct: 190 EDIIGRTSTELGIWTNPDDRARMLEGLRGQGPVRDLEMSMSDKTGNVFVGLLSAVIIELN 249

Query: 550 FSSCYSLTMHDISEWKQEKNK-------LSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
                 + M D++  K+ + +       L+      E  +     F   VSH++R PLT 
Sbjct: 250 GEEYLLVLMKDVTARKRMEEEIEILNTNLASRAADLEAANKELEAFSYSVSHDLRKPLTN 309

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           I G+ + +  + +G   + +   +   I      +  +++ LL  S++  G   L  E V
Sbjct: 310 INGYCQ-LVLELYGDSLDEQCRRFLQEIYDGTLRMNHLIDTLLRFSQLTRG--ELRREAV 366

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
            L E   E  + + L    +R+         I  +  D R ++ +  N+L NA  ++   
Sbjct: 367 DLSEIAKEVAAKLSLEEPGRRVKF--DITEGI-TVTGDARLLRVVMENLLGNAWKYSGKQ 423

Query: 723 GQIIISTTHTS-NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
            + +I    T    +    VRD G+G    E ++  + FG++  +      G G+GL   
Sbjct: 424 EEALIEFGGTEVAGKPACFVRDNGIGFDMGEADRLFEAFGRLSGAT--EFAGHGIGLATV 481

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIF 808
           + ++  + G  +      KG       
Sbjct: 482 QRIIHRHGGHIWAEGEEGKGATFYFSL 508



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 17/146 (11%), Positives = 53/146 (36%), Gaps = 5/146 (3%)

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
              ++++       +I    + GIA++  +G  L  N+    + GYP  ++    F    
Sbjct: 14  QKTQELQASEAHFRAIFNQAAAGIALVELDGRWLLVNQKFCDIVGYPEAELRNMNFQEIT 73

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP----FSSCYSLT 557
             +        +  +L+ +++  L        K+  ++ + + I  +         +   
Sbjct: 74  HPDDLPADLENIRRLLADEIQHCL-FEKRYIRKDGSVVWVNLSISLVRTIDDEPHYFIAV 132

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESS 583
             D++  ++ +  L  +++   +   
Sbjct: 133 AEDVTVRRRVEEALRESEEKFSRVFR 158



 Score = 65.4 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 40/401 (9%), Positives = 104/401 (25%), Gaps = 35/401 (8%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTW-YGKTTL 149
            G    ++++    +G    ++  M   +++    +  +   I  LL  +      +   
Sbjct: 43  DGRWLLVNQKFCDIVGYPEAELRNMNFQEITHPDDLPADLENIRRLLADEIQHCLFEKRY 102

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
              +G+   V ++L+   + + + E   F    +     V        +  ++KFS +  
Sbjct: 103 IRKDGS--VVWVNLSISLVRTIDDEPHYF--IAVAEDVTVRRRVEEALRESEEKFSRVFR 158

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
                 ++       F        + + +    L+ Y         + +  + T+ +   
Sbjct: 159 NAPIAITISTLAEGRF--------VEVNDTFERLSGYRREDIIGRTSTELGIWTNPDDRA 210

Query: 270 PEQEDFHTI----NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
              E         +L      +               L+   +  +            E 
Sbjct: 211 RMLEGLRGQGPVRDLEMSMSDKTGNVFVGLLSAVIIELNGEEYLLVLMKDVTARKRMEEE 270

Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
           ++            +L  AN        Y    D+              L          
Sbjct: 271 IEILNTN-LASRAADLEAANKELEA-FSYSVSHDLRKPLTNINGYCQLVLELYGDSLDEQ 328

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
             R  +     + R++           +  +         E   +     E       K 
Sbjct: 329 CRRFLQEIYDGTLRMN---------HLIDTLLRFSQLTRGELRREAVDLSEIAKEVAAKL 379

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
            +E    ++    +  ++GI +   +  +L     +  L G
Sbjct: 380 SLEEPGRRVK--FD-ITEGITVTG-DARLLRV--VMENLLG 414



 Score = 55.4 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 37/301 (12%), Positives = 77/301 (25%), Gaps = 16/301 (5%)

Query: 69  DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID 128
           +SE  F        +  T +  A G   E+++   +  G     +IG    ++    + D
Sbjct: 148 ESEEKFSRVFRNAPIAITISTLAEGRFVEVNDTFERLSGYRREDIIGRTSTELGIWTNPD 207

Query: 129 PNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIV-HVN 187
               + + L+ Q            + T       L+A+ I     E +G     ++    
Sbjct: 208 DRARMLEGLRGQGPVRDLEMSM-SDKTGNVFVGLLSAVII-----ELNGEEYLLVLMKDV 261

Query: 188 RVDNDPRALGKRL-DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY 246
                     + L     S   +++  +  +E   Y +      P           L  Y
Sbjct: 262 TARKRMEEEIEILNTNLASRAADLEAANKELEAFSYSVSHDLRKPLTNINGYCQLVLELY 321

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
               D+  +     +           +     +     + +      +   +        
Sbjct: 322 GDSLDEQCRRFLQEIYDGTLRMNHLIDTLLRFSQLTRGELRREAVDLSEIAKEVAAKLSL 381

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
             P     FD  E +T     +          GN              K  + +   GG 
Sbjct: 382 EEPGRRVKFDITEGITVTGDARLLRVVMENLLGN--------AWKYSGKQEEALIEFGGT 433

Query: 367 S 367
            
Sbjct: 434 E 434


>gi|146301102|ref|YP_001195693.1| PAS/PAC sensor signal transduction histidine kinase [Flavobacterium
            johnsoniae UW101]
 gi|146155520|gb|ABQ06374.1| PAS/PAC sensor signal transduction histidine kinase [Flavobacterium
            johnsoniae UW101]
          Length = 1068

 Score =  283 bits (724), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 103/768 (13%), Positives = 225/768 (29%), Gaps = 69/768 (8%)

Query: 90   DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTW--YGKT 147
             A   ++ ++E   + +     + +   + D         +  +  + +    +      
Sbjct: 320  GADLVVEMVNETYLQIVDKTEEQTLHKSIFDSVPEAQETVHPLLSQVYEDGIPYFTNELL 379

Query: 148  TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                  G       +L   P+   N E +G    G  +        +      +K F +L
Sbjct: 380  VTLNRYGKQEDCYFNLVFHPLREENNEVTGVIVVG--YEVTDSVKAKYFLSESEKAFRNL 437

Query: 208  HEIKKGHSSVEKEKYDIFSQQSPPPHLRM----KNKVSSLTEYYAHKD-------DVLKT 256
                    ++ K    I    +      +     ++V          +       ++L  
Sbjct: 438  VMQSPIAMTIFKGHDYIIELANTAMLDEIWQKKPSEVIGKPALEVFPELLNQKFPELLDE 497

Query: 257  EKYPLLTSEESS------LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310
              Y   T  ES       +  +   + ++       +  G + +      +         
Sbjct: 498  VLYEGKTIRESEAIAYVNIKGKLKKYYLDYQYTPLFEKNGEISSIMITVNDVTEKVEARK 557

Query: 311  LSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
                 +E   L  E  +       V +   ++  N     L   K    I     L    
Sbjct: 558  KVEDAEERARLASEIAEIVTWDLNVNTQQLIYSDN--LPELFGLKKNIKISRQQILDRFY 615

Query: 371  DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
             A       A +  +            AR   +      +  +        ++    +  
Sbjct: 616  IADLPILEKAYQKALKTN----IYKYEAR---VLKPDNTTCWIRVHGKIFFDELQNPVKM 668

Query: 431  NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490
             G   +  D +     +     +   + ++    +   +  G I   N+++    G   E
Sbjct: 669  LGTVMDVTDEKNRHEILMKSEEKFRVLADSMPQFVWTSDAMGNIDYFNQSLYDFTGISKE 728

Query: 491  DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
            D+ +  +  F+         +   E +                 + +             
Sbjct: 729  DVEKNGWLQFIHPEDREGNVNRWMESVKTGEEYLF--ENRFRRHDGEYRWQLSRAIPQRN 786

Query: 551  SSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD-----------FLARVSHE 595
            +      +  T  DI   +   + L+       +E   K+            F    SH+
Sbjct: 787  AEGKIQMWVGTSTDIQNQRDFTDMLAKQVHDRTQELELKNRDLINMNIELQSFAYISSHD 846

Query: 596  IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
            ++ PL  I  F+  +       +   +   Y   I+ S   +  ++ DLL  S+  S + 
Sbjct: 847  LQEPLRKIQTFASRLAELDDQNIS-AKAKTYLERIEVSAKRMQTLIQDLLTYSRTNSAER 905

Query: 656  NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715
               F   +LDE V E +        EK+ +I          ++     ++Q+  N++ NA
Sbjct: 906  I--FVKTNLDEIVEEVLMDFSERIEEKKAVIDLH-PLGEGTVM--PFQLRQLLHNLIGNA 960

Query: 716  IHFTPSG--GQIIISTTHTSNEEV------------ILRVRDTGVGMTNYELEKAMKPFG 761
            + F+  G   QI I        ++             LR+ D G+G  +   E+  + F 
Sbjct: 961  LKFSRKGIPPQIQIKARRVVGHKLDFKVDYPNNIYFCLRISDNGIGFDDEYKERIFEVFQ 1020

Query: 762  QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            ++    +    GTG+GL + K +V+ + G     S   +G   +I  P
Sbjct: 1021 RLN--TESEFSGTGIGLAIVKKIVENHKGVIKARSEKGQGATFKIFLP 1066



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/197 (12%), Positives = 63/197 (31%), Gaps = 8/197 (4%)

Query: 389 SDRTCIAASARLHTIQWNRE-NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
           ++            I  N +   +  TF      ++         I  E  D    ++ +
Sbjct: 107 TEGEATWHEDLYLPIYRNGKMEDVYWTFSYSPVKSEGGNIAGVLVICNETTDKVNIRKNL 166

Query: 448 EIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
           E    +    L    + + I      I+   N  + +++     ++L KP    L +   
Sbjct: 167 EESNKRYRENLMQAPNAMCIFKGSSFIVEIANEPMLEIWEREEHEVLNKPIFKSLPEAAG 226

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK------KLPFSSCYSLTMHD 560
             +   L ++     R T  ++ +  T+  K++   I +                 + +D
Sbjct: 227 RGLEDILMQVYLTGERFTANELPVKLTRNGKVVDTFINVVYEALKEPDGTIYGIVASAND 286

Query: 561 ISEWKQEKNKLSHAKKI 577
           ++     +N +  ++K 
Sbjct: 287 VTLQVMARNTIEESEKR 303



 Score = 57.7 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 31/267 (11%), Positives = 69/267 (25%), Gaps = 14/267 (5%)

Query: 68  LDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI 127
           + SE  F         +F W  DA G +   ++ L    G     +              
Sbjct: 686 MKSEEKFRVLADSMP-QFVWTSDAMGNIDYFNQSLYDFTGISKEDVEKNGWLQFIHPEDR 744

Query: 128 DPN-NHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI-VH 185
           + N N   + +K    +  +      +G   Y      A+P  +   +   + G    + 
Sbjct: 745 EGNVNRWMESVKTGEEYLFENRFRRHDGE--YRWQLSRAIPQRNAEGKIQMWVGTSTDIQ 802

Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE 245
             R   D  A       +   L      + ++E + +   S           +    L +
Sbjct: 803 NQRDFTDMLAKQVHDRTQELELKNRDLINMNIELQSFAYISSH---------DLQEPLRK 853

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
                  + + +   +    ++ L   E               +    +  +   +    
Sbjct: 854 IQTFASRLAELDDQNISAKAKTYLERIEVSAKRMQTLIQDLLTYSRTNSAERIFVKTNLD 913

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIP 332
                +   F E        +D  P+ 
Sbjct: 914 EIVEEVLMDFSERIEEKKAVIDLHPLG 940


>gi|239815300|ref|YP_002944210.1| PAS/PAC sensor signal transduction histidine kinase [Variovorax
           paradoxus S110]
 gi|239801877|gb|ACS18944.1| PAS/PAC sensor signal transduction histidine kinase [Variovorax
           paradoxus S110]
          Length = 431

 Score =  283 bits (724), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 82/396 (20%), Positives = 155/396 (39%), Gaps = 27/396 (6%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
                          I     D     R+ E  + +  + ++A+ +G+ +++ +G I   
Sbjct: 47  LPTRGAGVWGELAERIRKLLRDREQQTRQAEDRLQEFLAAIQASPNGVILLDEQGRIEWC 106

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
           N+  +  FG   E  L +     +                       ++    G   +  
Sbjct: 107 NQTAAGQFGIDAERDLLQHLANLVRDPAFVAYLASWNYSRD----VVIDASGPGQGHQRS 162

Query: 538 L-LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
             + L + +     +    LT  DI+  +Q +              + + DF+A VSHEI
Sbjct: 163 HPVRLSVQVHPYAGNRRMLLT-RDITAVEQAE--------------AMRRDFVANVSHEI 207

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTPLT + GF E ++N    PL       Y + + +  + +  +VNDLL +S++E     
Sbjct: 208 RTPLTVLAGFVETLQN---LPLDADERARYLSLMSQQSHRMETLVNDLLTLSRLEGSAAP 264

Query: 657 LHFEPVSLDEAVSEAISL---VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713
              + + +   +++       +      +   +  +       I      ++    N+LS
Sbjct: 265 SGNQWIRIRALLAQCEDEGRGLSGRLAPQGHRLSFTIEAES-EISGAPTELQSAMSNLLS 323

Query: 714 NAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
           NAI +TP GG++ +S     +      VRDTG G+    + +  + F +I  S+     G
Sbjct: 324 NAIRYTPGGGEVAVSWRLLPDGRGEYAVRDTGPGIAAEHIPRLTERFYRIDRSRSRETGG 383

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           TGLGL + K +   +  +  I ST  KG+   ++FP
Sbjct: 384 TGLGLAIVKHIAQRHGAELRIQSTVGKGSRFALVFP 419


>gi|152987767|ref|YP_001348377.1| RcsC [Pseudomonas aeruginosa PA7]
 gi|150962925|gb|ABR84950.1| RcsC [Pseudomonas aeruginosa PA7]
          Length = 1083

 Score =  283 bits (724), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 92/578 (15%), Positives = 190/578 (32%), Gaps = 52/578 (8%)

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
           S  + L            +  + Q     +  ++         +HP      D      P
Sbjct: 168 SGSTRLAVPAIHAMAERERLRENQPMMVDRMLARLRETPPGAADHPVHWVRADRYRGQAP 227

Query: 324 ETVD----KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST---------LL 370
           E +       P   +     N      S L L +    + +       +         LL
Sbjct: 228 ELLGIVRVDLPEALWWRDEPNHLIVAASLLDLRRINDFEQLMERPVFDSYSLVSPEGDLL 287

Query: 371 DAPKLSDNNAIKPVMLYRS---------DRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                ++                         +A     +   +     L    +     
Sbjct: 288 VGETPAEGLGDGLNFTRHGVAIQLRSQPAGGWLAVYRIGYASFFRHAQWLLAGLLLVPAL 347

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI-ILSTNRA 480
                   +              +++        ++++     + +++++G  +++ N+ 
Sbjct: 348 VLGGWLGLRWYARSVVHPAHRAHQQLVESDTFSRTLIQTAPVALVVLSQDGRQLVTCNQL 407

Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
             +  G   E          L   +   +     ++      Q             + L 
Sbjct: 408 AGQWLGGAAE---------ILALTSRWKLLDAQGQVAGGICVQV----------GGRYLQ 448

Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
                 +   +       +DI+   + +  L+ AK+ A+  S  K+ FLA +SHEIRTPL
Sbjct: 449 AAFAATRYAGTEAVLCVFNDITVHCEAEAALASAKRAADAASQAKTLFLASMSHEIRTPL 508

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
             ++G              N R   Y   I  +   ++ +++D+LD+SKIE+G+M L   
Sbjct: 509 YGVLGT----LELLDLTELNERQRAYLRTIQGASGTLMQLISDVLDVSKIEAGQMALAPV 564

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFT 719
                E   E +      A  K +        ++P +++ D+  ++Q+  N++SNA+ FT
Sbjct: 565 VFDPLELTQEVLGSFSASAMAKGLQFYACIDPDVPAQLIGDVARIRQVLANLVSNAVKFT 624

Query: 720 PSGGQI-IISTTHTSNEEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
             G  +  +           L  +V DTG+G+   + ++  + F Q+P        GTGL
Sbjct: 625 DIGRVVLRLKLLSREEGRAALQWQVADTGIGIAIEQQKRLFEAFYQVPG--VPHAGGTGL 682

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           GL +   + +   G   + S    G+   ++  L +T 
Sbjct: 683 GLSICWHLAEMMGGTLRVVSEAGLGSSFSLVLDLPETE 720


>gi|168705275|ref|ZP_02737552.1| sensory transduction histidine kinase [Gemmata obscuriglobus UQM
           2246]
          Length = 551

 Score =  283 bits (724), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 78/248 (31%), Positives = 129/248 (52%), Gaps = 4/248 (1%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I++  ++ ++L+       + +  KS+FL+ +SHE+R PL +IIGFSEV+          
Sbjct: 280 IADLDRKVDELARVNMALFESNRLKSEFLSTMSHELRDPLNSIIGFSEVLI---AAENLT 336

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
            +   YA  I  SG  +  ++ND+L+++K+E+GKM LH EP +   A   A + ++  A 
Sbjct: 337 EKQQRYAGNIMTSGQRLTALINDILELAKLEAGKMRLHPEPFNAAAACEHAAAQIRPQAE 396

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
           +K I +R +   + P    D   V QI  N+LSNA+ FTP GG++ +    T   +++L 
Sbjct: 397 KKNIDVRVAADPHAPATRQDAGKVHQIITNLLSNAVKFTPEGGRVTLKAA-TDGTDLVLT 455

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V DTGVG+   E +   + F Q  N       GTGLGL + + +     G   + S   +
Sbjct: 456 VTDTGVGIAPEEQDLIFEKFRQAANPMTREQGGTGLGLSIVRELAKLLGGDVTVHSELGR 515

Query: 801 GTLIEIIF 808
           G+   +  
Sbjct: 516 GSTFTVRI 523


>gi|28898529|ref|NP_798134.1| putative histidine kinase [Vibrio parahaemolyticus RIMD 2210633]
 gi|260879574|ref|ZP_05891929.1| signal transduction histidine kinase [Vibrio parahaemolyticus
           AN-5034]
 gi|260894951|ref|ZP_05903447.1| signal transduction histidine kinase [Vibrio parahaemolyticus
           Peru-466]
 gi|260901039|ref|ZP_05909434.1| response regulator receiver domain protein [Vibrio parahaemolyticus
           AQ4037]
 gi|28806747|dbj|BAC60018.1| putative histidine kinase [Vibrio parahaemolyticus RIMD 2210633]
 gi|308086084|gb|EFO35779.1| signal transduction histidine kinase [Vibrio parahaemolyticus
           Peru-466]
 gi|308093366|gb|EFO43061.1| signal transduction histidine kinase [Vibrio parahaemolyticus
           AN-5034]
 gi|308110723|gb|EFO48263.1| response regulator receiver domain protein [Vibrio parahaemolyticus
           AQ4037]
          Length = 1051

 Score =  283 bits (724), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 80/256 (31%), Positives = 130/256 (50%), Gaps = 12/256 (4%)

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + K     AK  A + S  KS FLA +SHEIRTPL  +IG SEV+ +            +
Sbjct: 376 KAKEDAERAKDDAIEASKAKSSFLANMSHEIRTPLNGVIGISEVLADTPLTAT----QRD 431

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           Y + I+ S  L+L ++ND+LD SKIESG + +      + E++ +  S+V   A EK I 
Sbjct: 432 YVDTIETSSQLLLSLINDVLDFSKIESGMLLISPHSTCVRESIYDIASIVSPKAKEKGIE 491

Query: 686 IRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILR 740
           +  S + N P  I+ D   ++Q+ +N +SNA+ FT  G  + +S T   + E    +   
Sbjct: 492 LTVSISPNTPYHIVIDDHRLRQVIMNFMSNAVKFTERGS-VELSITTLESNESEAIIEFS 550

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V+D+G+G+   + ++   PF Q  +S   +  GTGLGL ++  +V+   G   + S   +
Sbjct: 551 VQDSGIGIDEQQQKRIFAPFAQEDDSTTRQFGGTGLGLAISTQLVELMGGSIQLESEKGR 610

Query: 801 GTLIEIIF--PLYDTS 814
           G+        P+    
Sbjct: 611 GSRFYFQLTAPISQAH 626


>gi|154250849|ref|YP_001411673.1| multi-sensor signal transduction histidine kinase [Parvibaculum
           lavamentivorans DS-1]
 gi|154154799|gb|ABS62016.1| multi-sensor signal transduction histidine kinase [Parvibaculum
           lavamentivorans DS-1]
          Length = 445

 Score =  283 bits (724), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 67/363 (18%), Positives = 147/363 (40%), Gaps = 29/363 (7%)

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           ++L    D + +++  G +L  N A   L G        +     L     + +   +  
Sbjct: 98  ALLNRLPDPLIVLDGTGRVLFANVAAEALVGTAS---TGRHVATVLRS---APLVTAIDG 151

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKL 571
           +++    +++E       +      + +I      S        + + DI+E ++ +   
Sbjct: 152 VIADGKARSIEYTVPVPVQRNYTAMVSVIADTGTPSPSSSKTIFMLLRDITEARRIE--- 208

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
                      + ++DF+A  SHE++TPL ++ GF + ++             ++   + 
Sbjct: 209 -----------AMRADFVAFASHELKTPLASLSGFIDTLRGHAKD--DPEARDKFLGIMS 255

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
                +  +++DLL +S+IE  +     + V L   V++    +   +    + I     
Sbjct: 256 DQATRMRHLIDDLLSLSRIELREHVRPSDAVDLFSVVNDIADGLTPLSERYEVEIGIHAP 315

Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EVILRVRDTGVGM 748
             +P +  D   + Q+  N+  NA+ +  +G +I IS           V L VRD G G+
Sbjct: 316 AGLPLVRGDREELGQVIQNLAENALRYGRTGKRIEISLAPDQKGGRPYVRLTVRDFGPGI 375

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
               + +  + F ++  +      GTGLGL + K +V+ + G   I S   +G++  ++ 
Sbjct: 376 AKEHIPRLTERFYRVDPAASRAKGGTGLGLAIVKHIVNRHEGTLTIESELGQGSVFSVLL 435

Query: 809 PLY 811
           P++
Sbjct: 436 PIF 438


>gi|238483285|ref|XP_002372881.1| sensor histidine kinase/response regulator, putative [Aspergillus
            flavus NRRL3357]
 gi|220700931|gb|EED57269.1| sensor histidine kinase/response regulator, putative [Aspergillus
            flavus NRRL3357]
          Length = 2341

 Score =  283 bits (724), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 74/250 (29%), Positives = 126/250 (50%), Gaps = 10/250 (4%)

Query: 565  KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
            K  + +  H  K+ E  +  KS FLA +SH++RTP+  +IG SE++K  +     +    
Sbjct: 1872 KVAEAEAKHNVKLKEDAAKAKSIFLANISHDLRTPMNGVIGLSELLKATKL----DKEQD 1927

Query: 625  EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
            EY   I    + +L ++ND+LD SK+E+GKM +   P+++ E +SE +  ++    ++ +
Sbjct: 1928 EYVESIRVCADTLLTLINDILDFSKLEAGKMKISTVPLNIKETISEVVRALRYTHRDRGL 1987

Query: 685  LIRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL-- 739
                      P   +L D   + QI +N+LSN+  FTP G   +    T      + L  
Sbjct: 1988 ETIEDLEKVPPDLVVLGDPVRLHQIFMNLLSNSYKFTPKGSVTVRARVTREGKGRIRLEC 2047

Query: 740  RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA-NMGKFYIFSTP 798
             V DTG+G+   +  +  +PF Q  +S      G+GLGL + KA+++    G  ++ STP
Sbjct: 2048 SVSDTGIGIPEEQKSRLFRPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGAIWLDSTP 2107

Query: 799  AKGTLIEIIF 808
              GT +    
Sbjct: 2108 GVGTTVTFHL 2117


>gi|107102594|ref|ZP_01366512.1| hypothetical protein PaerPA_01003658 [Pseudomonas aeruginosa PACS2]
          Length = 705

 Score =  283 bits (724), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 90/379 (23%), Positives = 163/379 (43%), Gaps = 19/379 (5%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF--T 498
           +  +  +   +    ++++     ++I   +G +L+ NR   +      E         +
Sbjct: 65  QRTEADLSGRLALKQALVDGIPYPVSIRTLDGRLLACNRNYLESLRMTREQARGTLLTDS 124

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM 558
            ++E +   +M+     +         +          +LL +   +          L +
Sbjct: 125 DWVEGSKARLMHQQCLAVARGGTASFTDMAVRI---GGQLLEIHHWVTPYRDRQGRVLGL 181

Query: 559 ----HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DI+E ++   +L  A + A++ +  KS FLA +SHEIRTP+ A+IG  E +  QR
Sbjct: 182 MNGWIDITERERLARQLREAMRQADEANRAKSVFLATMSHEIRTPMNAVIGILE-LVLQR 240

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
             P    R          +   +  ++ D+LD++KIESG + L  E V L   V     +
Sbjct: 241 LAPEQRERAS--LEVAYEAAGSLQLLIGDILDVAKIESGHLTLTPERVRLRHVVESVRRM 298

Query: 675 VQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
            +  A +K + +     +     +L D    KQ+  N++SNAI FT  G Q+ I     S
Sbjct: 299 FEGLARQKGLRLVVELDDAPGRDVLIDPLRFKQVLSNLVSNAIKFTERG-QVTIRLQERS 357

Query: 734 NEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
            +E    V + V D+G+G+   +  +  +PF Q+   +     GTGLGL + + +VD   
Sbjct: 358 LDEGRAIVRVDVEDSGIGIAPADQARLFQPFIQVAKGRT-VQGGTGLGLAICRKLVDLMG 416

Query: 790 GKFYIFSTPAKGTLIEIIF 808
           G   + S P KGT + +  
Sbjct: 417 GDVEMHSEPGKGTRVSLDL 435


>gi|298387810|ref|ZP_06997360.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
 gi|298259415|gb|EFI02289.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
          Length = 391

 Score =  283 bits (724), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 105/398 (26%), Positives = 169/398 (42%), Gaps = 35/398 (8%)

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP--------VEDIL 493
              RK+E       +IL+     I +I+ +  +L TN    +L G           + + 
Sbjct: 7   RESRKLEHTNHIASAILKNVHAYILLIDNDFKVLKTN--YYQLTGTQKGLEEKRVGDLLQ 64

Query: 494 RKP-------FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS----LR 542
            +                +  +                LE      T E+K +     + 
Sbjct: 65  CRNALSAEGGCGTHAYCGSCPIRCAIRQAFEQRRGFTDLEATLNVLTSEKKSVECDAVIS 124

Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
                L       LT+HDI++ K+ + +L+ AK+ AE     KS FLA +SHEIRTPL A
Sbjct: 125 GSYFLLNEEENMVLTVHDITQLKETEKQLTLAKEKAENADLSKSAFLANMSHEIRTPLNA 184

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           I GF+EV+              +Y   I  + +L+L +VND+LD+SKIE+G +   +  V
Sbjct: 185 ITGFAEVLA----SANTEEEKAQYQEIIKMNADLLLQLVNDILDMSKIEAGTLEFVYTKV 240

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIP--RILADLRSVKQIALNILSNAIHFTP 720
            ++  +S+   L Q+  N+    IR     ++P   I  D   V Q+  N  +NAI FT 
Sbjct: 241 DINLLLSDLRQLFQMRVNDAGKNIRIIAEPSLPSCSIETDRNRVAQVLSNFTTNAIKFTQ 300

Query: 721 SGGQIIISTTHTSNE-EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
            G    IS  + + + E+   V DTG G+   +L +    F ++   +    +GTGLGL 
Sbjct: 301 EG---TISIGYEARDTELYFYVTDTGAGIPADKLPEVFGRFVKLNKDK----KGTGLGLS 353

Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
           ++K +V+   G+    S   KG+      P      P 
Sbjct: 354 ISKTIVNKLEGQIGADSVEGKGSTFWFTIPYRTCGRPE 391


>gi|300767565|ref|ZP_07077475.1| histidine protein kinase; sensor protein [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
 gi|308179757|ref|YP_003923885.1| histidine protein kinase; sensor protein [Lactobacillus plantarum
           subsp. plantarum ST-III]
 gi|300494550|gb|EFK29708.1| histidine protein kinase; sensor protein [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
 gi|308045248|gb|ADN97791.1| histidine protein kinase; sensor protein [Lactobacillus plantarum
           subsp. plantarum ST-III]
          Length = 467

 Score =  283 bits (724), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 78/402 (19%), Positives = 167/402 (41%), Gaps = 24/402 (5%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
                  P       +   +   +   R+ E++  +L  I+     G+ +I+    +  +
Sbjct: 88  ILLPQSDPLYSLAQAVNQLESYQKSQTRRAELQEKELMMIMRYLPVGVMVIDHRRQVQLS 147

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
           N A+S+L    V  +               ++   +T   +     TL         E  
Sbjct: 148 NPAMSELLQVSVNTVAHIYTKDIQLYALTKLIEDTITSGKNQRATITLTPAPNTQVVEAS 207

Query: 538 LLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
            + ++    +        L ++DI+E    +                + DF++  SHE++
Sbjct: 208 TVYIQGNRSQFQ----IVLMLYDITEVYMIE--------------QMQDDFVSNASHELK 249

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN- 656
           TP+TAI GF+E + +            ++ + I      ++D++ D+L +S+I +     
Sbjct: 250 TPITAISGFTETLLSGAKD--DPDTLDQFLHIIADESQRLIDLIQDVLSLSRIRAQNTTM 307

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716
           L   P+++   + + +++VQ     + + I      ++  I +D + + QI  N+L+NAI
Sbjct: 308 LTLAPLAVRPLIEQELAVVQQAIERQHLTINNQVDADL-MITSDSQKLSQIIKNLLTNAI 366

Query: 717 HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTG 775
            +    G + I+T  +      L V+DTG+G++  + ++  + F +   S+  +   GTG
Sbjct: 367 KYNRPHGSVTIATMVSHQTW-SLIVKDTGIGISADDQQRIFERFYRASPSRSQQLVSGTG 425

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
           LGL + + +V+A  G   + S    GT + +  PL  ++   
Sbjct: 426 LGLAIVQELVNAMHGTIDVVSQRGVGTTMTVTLPLAASASEQ 467


>gi|2073556|gb|AAB53936.1| sensor/regulator protein RpfA [Pectobacterium carotovorum subsp.
           carotovorum]
          Length = 929

 Score =  283 bits (724), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 94/345 (27%), Positives = 156/345 (45%), Gaps = 19/345 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +F Y +   +  P    +       ++      L   +   +             +++ +
Sbjct: 192 IFAYRLMRDVTTPIRNMV-----DTVDRIRRGQLDSRVEGYMLGELDMLKNGINSMAMSL 246

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                          +D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 247 TAYHEEMQQNIDQATYDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTP 306

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+     Q      N    +Y   I+RS N +L+I+ND+LD SK+E+GK+ L  
Sbjct: 307 LNGLIGFT----RQTLKTPLNTTQTDYLLTIERSANNLLNIINDVLDFSKLEAGKLVLED 362

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P SL   + + + L+   A+EK + +  S  N++P   + D   ++QI  N+L NAI F
Sbjct: 363 IPFSLHNTLDDVVMLLAHTAHEKGLELTLSIQNDVPEQFVGDPLRIQQIITNLLGNAIKF 422

Query: 719 TPSGGQ-IIISTTHTSNEEVILRV--RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T  G   I +        +V+L V  RDTG+G+   +  +  + F Q   S   R  GTG
Sbjct: 423 TEQGNIDIRVEKRRQELHQVLLEVQIRDTGIGIAELQQSQLFQAFRQADTSISRRHGGTG 482

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTL--IEIIFPLYDTSHPHD 818
           LGL + + +V    G     S  +KG+     I  PL   + P +
Sbjct: 483 LGLVITQRLVKEMGGDISFQSELSKGSTFWFHITLPLNPHAIPTE 527


>gi|46123237|ref|XP_386172.1| hypothetical protein FG05996.1 [Gibberella zeae PH-1]
          Length = 2544

 Score =  283 bits (724), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 78/258 (30%), Positives = 130/258 (50%), Gaps = 16/258 (6%)

Query: 562  SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
            ++ K  + +     K+AE+ +  KS FLA VSHE+RTPL  +IG SE++++       N 
Sbjct: 1899 TKAKNAEAEAKRNVKLAEEAAKAKSIFLANVSHELRTPLNGVIGNSELLRDSEL----NR 1954

Query: 622  RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV----QL 677
              +E A+ I  S +L+L ++ND+LD SK+E+ KM L+    + ++ V E +  V    + 
Sbjct: 1955 DQLEMADSIRVSADLLLTVINDILDFSKMEADKMKLYIIAFNPEDMVREVVRAVSYSNRE 2014

Query: 678  YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH----TS 733
              ++K + I  S       I  D   + Q+  N++ N++ FT  G  I I          
Sbjct: 2015 KTSKKNVKIVQSINLPPMLIYGDPIRLHQVLGNLIGNSLKFTEDGS-ITIGARLDKETQE 2073

Query: 734  NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD-ANMGKF 792
            +  +   VRDTG+G+   +L K  +PF Q   S   +  G+GLGL + K++++    GK 
Sbjct: 2074 HATLTFWVRDTGIGIPPQQLAKLFQPFSQADASTARKYGGSGLGLSICKSLIETMMKGKI 2133

Query: 793  YIFSTPAKGTL--IEIIF 808
             + S    GT     + F
Sbjct: 2134 RLESEENVGTTAWFTVTF 2151


>gi|153941037|ref|YP_001392041.1| sensory box histidine kinase [Clostridium botulinum F str.
           Langeland]
 gi|170754687|ref|YP_001782369.1| sensory box histidine kinase [Clostridium botulinum B1 str. Okra]
 gi|152936933|gb|ABS42431.1| sensory box histidine kinase [Clostridium botulinum F str.
           Langeland]
 gi|169119899|gb|ACA43735.1| sensory box histidine kinase [Clostridium botulinum B1 str. Okra]
 gi|322807072|emb|CBZ04646.1| two-component sensor histidine kinase [Clostridium botulinum H04402
           065]
          Length = 702

 Score =  283 bits (724), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 90/496 (18%), Positives = 183/496 (36%), Gaps = 18/496 (3%)

Query: 322 TPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
               ++       V+     L   N +   + + K    ++I   ++           N 
Sbjct: 184 LNNVINNISEGILVFDKHSKLILWNKAIEQIGEMKIKKILDIEEIINEYDIYILDDHKNM 243

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
              +     D         L  ++ +      + +      ++  E +          D 
Sbjct: 244 KYKIKKMNPDYNSSVKDLLLKLVKKDTNKIKYIEYNSNPIMDENNEILYTISSIKNVTDL 303

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPV-----EDILR 494
             ++   E     +  +++     +A+++  +      N    +L           ++  
Sbjct: 304 IESQIISEERAEFIKYVVDCIELPLAVLDYPDLTYKLVNERYEELVERLHTKKIKGNLFG 363

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQ--TLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
                   +         L ++    +++     K  +  + EE+   +R I  +     
Sbjct: 364 NTVENIFRKEEFKEQLEVLQKMKDGTIKEYTFSPKKFILQSGEERFFKVRYIYHETKNKK 423

Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
              +   D++E  +   +L       EK +  K +F   +SHE+RTPLT I    + +  
Sbjct: 424 RVHIHGSDVTEEFKSNLEL-------EKVNKLKDEFFTIISHELRTPLTIIYSSLQ-LAY 475

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
             +    N    +    I+++   +L ++N++LDISK E+G + L+ E   +       +
Sbjct: 476 DIYPEDINLNIDKILKRINQNTARLLKLINNILDISKAEAGFLTLNNEYFDIVLETENIV 535

Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
           + +  YAN K I +          +  D    ++I LN+LSNA+ FTP    I ++    
Sbjct: 536 NSITNYANSKNINLIFDTTKEEEEVWIDKDKYERILLNLLSNAVKFTPENKSIYVTLKIY 595

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
            N    L V+D G G+   +++     F Q+ +S     EGTG+GL L K +VD   G+ 
Sbjct: 596 KNNF-KLIVKDEGRGIPKEKIDCIFNRFAQVNSSLSRSAEGTGIGLSLVKKIVDLMDGEI 654

Query: 793 YIFSTPAKGTLIEIIF 808
            ++S   KGT   +  
Sbjct: 655 KVYSILGKGTTFTVKI 670


>gi|159903936|ref|YP_001551280.1| two-component sensor histidine kinase [Prochlorococcus marinus str.
           MIT 9211]
 gi|159889112|gb|ABX09326.1| two-component sensor histidine kinase [Prochlorococcus marinus str.
           MIT 9211]
          Length = 686

 Score =  283 bits (724), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 77/395 (19%), Positives = 170/395 (43%), Gaps = 42/395 (10%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            +++   ++  S++   +DG  ++++EG I+  N    + F +   ++  +     L + 
Sbjct: 287 EELKSAQVKQQSLIATMADGAILLDQEGRIVLVNATARRFFRWEGRNLEGQELIDELPEI 346

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDIS 562
             + +   L  I +  + +  +           L  +   ++    S+    ++T+ D++
Sbjct: 347 IANDLQPTLVSIRNN-VLENYDLRCNIDEPSRTLRIVMQSVRDSTGSNLKGVAVTIQDLT 405

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
                            + ++ +S F++ VSHE+RTPL  I  + E + +     L    
Sbjct: 406 R--------------EVELNAAQSRFISNVSHELRTPLFNIKSYVETLHD-LNDKLTEEE 450

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
            IE+    +   + +  +VND+LD+SK+E+    + FE +++D  + + +   +L A +K
Sbjct: 451 KIEFLGIANSETDRLTRLVNDVLDLSKLETS-PKVKFEKLNIDPGIEQTLRNYKLNAEDK 509

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN-------- 734
           ++ +      N+P IL +   + Q+  N++ NA+ F+   G+++I      +        
Sbjct: 510 KVDLCHEIEENLPSILGNWDMLLQVLDNLVGNALKFSRRSGKLMIRAYTWPDICITSFKN 569

Query: 735 --------------EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
                           V + + DTG G++  +  K  + F ++ NS      GTGLGL +
Sbjct: 570 KSNDAPCCDVISPLPRVRVEISDTGCGISREDQLKIFERFYRVENSVHTEA-GTGLGLSI 628

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            K ++  +  +  + S P  GT      PL ++  
Sbjct: 629 VKGILGKHGSQIRMASEPEIGTTFWFDLPLSESDE 663


>gi|261324700|ref|ZP_05963897.1| integral membrane sensor signal transduction histidine kinase
           [Brucella neotomae 5K33]
 gi|261300680|gb|EEY04177.1| integral membrane sensor signal transduction histidine kinase
           [Brucella neotomae 5K33]
          Length = 532

 Score =  283 bits (724), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 92/349 (26%), Positives = 168/349 (48%), Gaps = 4/349 (1%)

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
             ++ EGI+ S +   +KL G   + +        +           L ++ +    + +
Sbjct: 134 FGLDIEGIVSSVDGETAKLLGVQPKMLEGTALIDRVHVADRVQYLSLLADLRAGMATRKV 193

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
           +            +      +        +L    +   ++  ++++  K   E E   K
Sbjct: 194 DVRLRSIE-NGNPVFRAYRFEGAGSDRAITLIGRSLEGEQKLLDEIAMLKAELESERIGK 252

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
              LA VSHE+RTPL +IIGFS+++ ++  G L + R  EYA  I +SG+ +L++VN +L
Sbjct: 253 GRLLATVSHELRTPLNSIIGFSDMLTHEIGGKLASDRQREYAGLIHQSGHYLLELVNAVL 312

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
           D S++E+G  ++  +     +AV    +++   A +K +       N +  ++AD R+V+
Sbjct: 313 DNSRLETGTYSIAPQSFVFRDAVEMCTAVMLPQAEKKGVAFCHRVGNGVGELVADRRAVQ 372

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNE---EVILRVRDTGVGMTNYELEKAMKPFGQ 762
           QI LN+ +NA+ FT SGG + I       +    +   V DTG+G+   +L++   PF +
Sbjct: 373 QILLNLATNAVKFTQSGGCVTIDAARVMADGCPMLEFSVSDTGIGIEPEDLQRIGTPFVR 432

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
             NS     EG+GLGL + K +V+ + G   + S P +GT++ I  PL 
Sbjct: 433 AGNSYTQAQEGSGLGLSVVKGLVELHQGSMQLKSRPGEGTVVMIRLPLA 481


>gi|94263706|ref|ZP_01287514.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
 gi|93455905|gb|EAT06064.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
          Length = 706

 Score =  283 bits (724), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 82/634 (12%), Positives = 193/634 (30%), Gaps = 45/634 (7%)

Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD 252
           P A    L++             +  +      S  +      +  +     +  A++  
Sbjct: 104 PLATMINLERGEPVRGFGGVILVASHRHDIQDLSDLNGKTIASVTRRSLGGYQTQAYELL 163

Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
               +    +   E+ +P       +   +         +        +           
Sbjct: 164 KQGIDPERDIVLLETEMPHDAAVEAMLSGRADAAMARSGIMEEMIAEGKLDPEAVRILRR 223

Query: 313 AYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                              P +                L    ++  +   G +S     
Sbjct: 224 RPEPGFPF-------ALSTPLYPEWPFAALAHTDEQTALLVASALYALPHGGTVSRASAI 276

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
              +     +PV     +               +      +  +    A      +    
Sbjct: 277 HGFTVPADYRPVEELMRELRLPPFDQAPRFTLRDAWQRWTIPIVGALVAVGLISLLSLAL 336

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSI--LEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490
                        + +     L ++  L +  +G+  ++  G     N +   + G   E
Sbjct: 337 YW----------ARRQAHREYLRTLNLLASLGEGVYGVDLHGSFTFINPSALAMLGCNEE 386

Query: 491 DILRKPFTVFLEQ-----NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
           ++L +                   +  +++ L     + LE+       +     + +++
Sbjct: 387 EVLGRDQHQLFHHHTAAGEPYPAQDCPISQTLGDGRPRRLEEWFWHRNGQG--FPVNLVV 444

Query: 546 KKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
             L              DIS+ K  + +L        + ++    F   VSH++R PL  
Sbjct: 445 TPLYEGRQLVGVVAAFQDISDRKAVEVEL-------RRSNADLEQFAYVVSHDLRQPLRM 497

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           I G+   +  +      +    E  ++       +  ++  LL+ S++  G+      P+
Sbjct: 498 INGYM-GLLERALNDKLDDETREMMDFAAGGARRMDQMLVSLLEYSRV--GRKGEPMAPL 554

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
           +  EAV+EA+  ++   N+    +R   +   P I+A      ++  N++ NA+ +   G
Sbjct: 555 ASREAVTEALHFLEPEINQTDAKVR--LSGQWPEIVASRDEFTRLWQNLIGNALKYRAPG 612

Query: 723 GQIIISTTHTSNEE-VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
               I    T+        ++D G+G+   + ++  K F ++    + + EGTG+GL + 
Sbjct: 613 RTPEIDLAVTAKGSFWEFTIKDNGIGIDPAQTDRLFKVFQRLH--TRDKYEGTGVGLAVC 670

Query: 782 KAMVDANMGKFYIFST-PAKGTLIEIIFPLYDTS 814
           + +V+ + G     S    KGT      P+  TS
Sbjct: 671 RKIVERHGGTITAESEGDGKGTTFRFTLPIQHTS 704



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 28/250 (11%), Positives = 65/250 (26%), Gaps = 15/250 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD------ILHIDPNNHIGDLLKR 139
            + +D HG    I+      +G    +++G     +          +   +  I   L  
Sbjct: 361 VYGVDLHGSFTFINPSALAMLGCNEEEVLGRDQHQLFHHHTAAGEPYPAQDCPISQTLGD 420

Query: 140 QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199
                 +   W   G     P++L   P+Y       G +  G+V   +  +D +A+   
Sbjct: 421 GRPRRLEEWFWHRNG--QGFPVNLVVTPLY------EGRQLVGVVAAFQDISDRKAVEVE 472

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
           L +  + L +     S   ++   + +         + +K+   T               
Sbjct: 473 LRRSNADLEQFAYVVSHDLRQPLRMINGYMGLLERALNDKLDDETREMMDFAAGGARRMD 532

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
            +L S                   +++     L     E  +  +               
Sbjct: 533 QMLVSLLE-YSRVGRKGEPMAPLASREAVTEALHFLEPEINQTDAKVRLSGQWPEIVASR 591

Query: 320 NLTPETVDKC 329
           +         
Sbjct: 592 DEFTRLWQNL 601


>gi|29346404|ref|NP_809907.1| two-component system histidine kinase [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|29338300|gb|AAO76101.1| two-component system histidine kinase [Bacteroides thetaiotaomicron
           VPI-5482]
          Length = 499

 Score =  283 bits (724), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 99/506 (19%), Positives = 172/506 (33%), Gaps = 31/506 (6%)

Query: 323 PETVDKCPIPFFVYS-HGNLFYANP-SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
            E +D  P    +++  G +   N  +   L  + SV+ +      + L       ++  
Sbjct: 11  DELLDILPDGVIIFNISGEVIQLNRQALTELHVHSSVNAMMPLP-TNILFKLLNNKEDIL 69

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
              +   R      + S      +        +    F    +                 
Sbjct: 70  SVILEKIRQGEQTYSLSEHTFMQEQVDYTQFPIR-GDFATIKEDGNLKKILFFFRNITVE 128

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED---ILRKPF 497
              +  +   + +              INR       NR    L G    +   +  + +
Sbjct: 129 LTQEYILNTALQRTR-----IYPWYYDINRS-EFTLDNRYFEHL-GISAGENNTLTMEEY 181

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---- 553
              +  +    M       LS                +            +   S     
Sbjct: 182 VNMIHPDDRQAMADAFIVQLSGMETFDKSVPFRLHRGDGTWEWFEGQSTYIANISGHPYR 241

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
                  I E+K  +N L  A+K AE+    K  FLA +SHEIRTPL AI+GFS+VI + 
Sbjct: 242 LVGICMSIQEYKDIENTLIEARKKAEESDRLKMAFLANMSHEIRTPLNAIVGFSDVIGST 301

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI- 672
            +  L      ++   I  +   ++ +++D+LD+SKIES  +   F   SL   + +   
Sbjct: 302 -YDELSEEERADFVRLISINSEHLVRLIDDVLDLSKIESNTIKFTFTDCSLRSLMIDVEK 360

Query: 673 -SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
              ++  +    I IR    N    I  D   +KQ+  N ++NA  FT  G  I      
Sbjct: 361 EQTMKPISE---IEIRALLPNEDVYINTDATRLKQVISNFINNARKFTEKG-YIHFGYAV 416

Query: 732 T--SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
                  V + V DTG G+     ++    F ++   +    +GTGLGL + K +V+   
Sbjct: 417 DSVDASSVHVFVEDTGSGIPKECQKEIFDRFYKVDTFK----QGTGLGLSICKTIVEHLQ 472

Query: 790 GKFYIFSTPAKGTLIEIIFPLYDTSH 815
           G   + S   KG+   +  P    + 
Sbjct: 473 GDISVESEMGKGSRFIVTLPFERQTE 498


>gi|172057054|ref|YP_001813514.1| integral membrane sensor signal transduction histidine kinase
           [Exiguobacterium sibiricum 255-15]
 gi|171989575|gb|ACB60497.1| integral membrane sensor signal transduction histidine kinase
           [Exiguobacterium sibiricum 255-15]
          Length = 575

 Score =  283 bits (724), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 88/477 (18%), Positives = 170/477 (35%), Gaps = 62/477 (12%)

Query: 334 FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393
            +    N+  AN     + +   +  I      +  L     +    I+  ++   +   
Sbjct: 152 LIEQLTNIEQANEGARQIIQLCVLLAIIGTTVFAFFLSTRITAPLRTIRQAVVEAGEGKF 211

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
                         + SL               N   + +     D       ++ E   
Sbjct: 212 --------------DQSLTQRSRDEIGDLALAFNEMSSQLNQYVTD-------LDKERHL 250

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
           L SIL   +DG+   +  G +L+TN                           P  +    
Sbjct: 251 LSSILRCMADGVLTFSESGELLATNPPAEAFL---------------AGGPVPDELIELF 295

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-CYSLTMHDISEWKQEKNKLS 572
             ++  +   T+        +E +   + +               + D++E +Q +    
Sbjct: 296 QTVMRKEKEMTVSFE-----REGRFYIIIVSPLLEQEEQIGAVAVLRDMTEAQQLE---- 346

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
                       ++DF+A VSHE+RTPL  + G+SE I +       +    E+A+ I  
Sbjct: 347 ----------KMRADFVANVSHELRTPLVMLQGYSEAIVDGM--TESDEATKEFASIIYD 394

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
               +  +VNDLLD++++E+G      E +         +   +    EKR+    +  +
Sbjct: 395 ESQRLSRLVNDLLDLARMEAGYQEKRIELIDAVPFAKRMVKKFKQMGLEKRVSFEVTGPD 454

Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752
              +  AD   + Q+  N+L NA+ +T  G +I I  T    E + L V D+G G+   +
Sbjct: 455 --VQFEADPDQMDQVMTNLLGNALRYTEDG-KIKIEIT-EDRETISLSVIDSGDGIPEED 510

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +      F +   ++     GTG+GL +   +V ++ G+  + S   KG++  I  P
Sbjct: 511 VPFVFDRFYKADKARTRGKTGTGIGLAIVANVVRSHDGEVQVESELGKGSVFRIQLP 567


>gi|239636842|ref|ZP_04677841.1| sensor protein ResE [Staphylococcus warneri L37603]
 gi|239597516|gb|EEQ80014.1| sensor protein ResE [Staphylococcus warneri L37603]
          Length = 586

 Score =  283 bits (724), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 67/398 (16%), Positives = 152/398 (38%), Gaps = 39/398 (9%)

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
                   ++  E          ++   +    +        S++ +  +G+  IN +  
Sbjct: 225 HITSVSTKDEIGELSRAFNNMSFEIQEHVE--ALSTSKNIRDSLINSMVEGVIGINEQKD 282

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
           I+ +N+   ++F               L+ N   ++   + +  +    Q  E       
Sbjct: 283 IILSNKMADQVF-------------HTLDDNAVELIEKQIEQTFNTKETQFQEIEANTRY 329

Query: 534 KEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
                + +   I ++           + D++                      K DF+A 
Sbjct: 330 ----YVIIMSYIDRIQNDGRSGIVAIIRDMT--------------NEHNLDQMKKDFIAN 371

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           VSHE+RTP+  + G++E I +            E    +      +  +VN+LL++++++
Sbjct: 372 VSHELRTPIALLQGYTESIVDGVVTE--PDEIHESLAIVLDESKRLNRLVNELLNVARMD 429

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
           +  +++  E   + + +++     +  A +  + ++   +N       D+  + Q+  N+
Sbjct: 430 AEGLSVEKESQPIADLLNKMRIKYRQQATDLELNMQFEVSNQQLWDY-DMDRMDQVLTNL 488

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           + NA  +T  G  I + T       + L + DTG G+    L++    F ++  S++   
Sbjct: 489 IDNASRYTQPGDTISVKTDEDDRSHI-LSIADTGTGIAPEHLQQVFDRFYKVDASRKRGK 547

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +GTGLGL + K +++ + G   + S   KGT   I  P
Sbjct: 548 QGTGLGLFICKMIIEEHGGTIEVESQVGKGTTFIIKLP 585


>gi|146312879|ref|YP_001177953.1| hybrid sensory histidine kinase BarA [Enterobacter sp. 638]
 gi|145319755|gb|ABP61902.1| Hpt sensor hybrid histidine kinase [Enterobacter sp. 638]
          Length = 918

 Score =  283 bits (724), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 82/333 (24%), Positives = 152/333 (45%), Gaps = 17/333 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +FG+ +   +  P    +               L   +   +             +++ +
Sbjct: 193 IFGWRLMRDVTSPIRNMVNTVDR-----IRRGQLDSRVEGFMLGELDMLKNGINSMAMSL 247

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 248 AAYHEEMQHNVDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTP 307

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+            NP   ++ + I+RS N +L I+ND+LD SK+E+GK+ L  
Sbjct: 308 LNGVIGFT----RLTLKSELNPTQRDHLHTIERSANNLLAIINDVLDFSKLEAGKLILES 363

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P  L   + E ++L+   +++K + +  +  N++P  ++ D   ++Q+  N++ NAI F
Sbjct: 364 IPFPLRSTLDEIVTLLAHSSHDKGLELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKF 423

Query: 719 TPSGGQ-IIISTTHTSNEEVILRV--RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T +G   +++     SN ++ + V  RDTG+G+   +  +  + F Q   S   R  GTG
Sbjct: 424 TENGNIDVLVEKRAISNNKLQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTG 483

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           LGL + + ++    G     S P +G+      
Sbjct: 484 LGLVITQKLLKEMGGDISFHSQPNRGSTFWFHI 516


>gi|77458871|ref|YP_348377.1| multi-sensor hybrid histidine kinase [Pseudomonas fluorescens
           Pf0-1]
 gi|77382874|gb|ABA74387.1| multi-sensor hybrid histidine kinase [Pseudomonas fluorescens
           Pf0-1]
          Length = 1163

 Score =  283 bits (724), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 104/636 (16%), Positives = 224/636 (35%), Gaps = 40/636 (6%)

Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA 248
            +       +RL    +      +    +++   D  S        R+ +++    E   
Sbjct: 107 DNPAQTDRLRRLQALQTEWATYAQSMIDLQRASGDYKSAVKAGKGKRLTDEIRKQFEDVI 166

Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
             + +L+  +   +                 ++          L N S+     L+ +  
Sbjct: 167 ETEQLLRASRNEDVRRTTIWSISLYLLFVAGISGLLAYVGRRDLVNLSQSYGATLAAQEA 226

Query: 309 PSLSAYFDE-GENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDI--EIAGG 365
            +          N   +  ++      V   G        F       +V  +      G
Sbjct: 227 SAKRLEQQAWLRNGQTQLAEQVLGQLTVNLLGRNIL---QFCAQYLGSAVAALYVREEHG 283

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
               +     S     +   +Y  +      + +   I+ +   S               
Sbjct: 284 GLKRVATYGFSREQEQQNQSIYSEEGLVGQVAQQARLIRLDSVPSDYFKVSSGLGEGLPR 343

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
             +     + E V+  I    +     +  ++LE  +         G I           
Sbjct: 344 SVLVVPTSDDERVNGVIELGFLRPLTDRDVALLELIA---------GNI----------- 383

Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYL--TEILSLDLRQTLEKITLGSTKEEKL----L 539
           G  +E    +     +   T  +        E L     +  E+  +    +  L    +
Sbjct: 384 GTSIEAARYRQRLQEVLAETQQLNEELQVQQEELKTANEELEEQSRILKESQAHLETQQV 443

Query: 540 SLRIIIKKLPFSSCYSLTMHDI-----SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
            L    ++L   +       D      +E  Q + +L    +  ++ S +KS+FLA +SH
Sbjct: 444 ELEQTNEQLAEQAQTLAEQRDAMDQKNTELNQAQVQLEERAEELQRSSKYKSEFLANMSH 503

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           E+RTPL + +  ++++       L     +++A  I  +GN +L+++ND+LDISK+E+GK
Sbjct: 504 ELRTPLNSSLILAKLLAENPQENLSAE-QVKFAESIYSAGNDLLNLINDILDISKVEAGK 562

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILS 713
           + +  E  S+         + +  A  K++        + P  +  D + ++Q+  N+LS
Sbjct: 563 LEVMPENTSVARLADGLRGMFEPLAAVKQLAFSVQLQPDAPSTLFTDRQRLEQVIKNLLS 622

Query: 714 NAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
           NA+ FT  G  + ++     ++ +   VRD+G+G+   + E   + F Q   +   +  G
Sbjct: 623 NAVKFTEHG-TVSLTIAGQPDDRIAFIVRDSGIGIAADQQESIFEAFRQADGTTNRKYGG 681

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           TGLGL +++ +     G   + S P +G++  ++ P
Sbjct: 682 TGLGLSISRDLATLLGGSISVSSAPGQGSVFTLVLP 717


>gi|253998422|ref|YP_003050485.1| histidine kinase [Methylovorus sp. SIP3-4]
 gi|253985101|gb|ACT49958.1| histidine kinase [Methylovorus sp. SIP3-4]
          Length = 1151

 Score =  283 bits (724), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 74/266 (27%), Positives = 138/266 (51%), Gaps = 6/266 (2%)

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
            + +   +    L + +I   +Q   +L  A+++AE+ +  KS ++  +SHE+RTPL +I
Sbjct: 655 RVAQEESNRQTGLLLREIELHRQTDAELQQARQVAEQANQAKSRYITGISHELRTPLNSI 714

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +G+++++ N    P            I RSG  +L ++   LDI++IESGK+    +P+ 
Sbjct: 715 LGYAQLLDNDVSIPAA---RQPAIRVIRRSGEHLLSLIEGTLDIARIESGKLTFDIKPLR 771

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSG 722
           L E + + + + +L A  K +        ++P  + AD + + QI +NIL NA+ FT  G
Sbjct: 772 LPEFIQQVVDMFELQARNKGLTFSYQLTGDLPDMVRADQKRLSQILINILGNAVKFTRQG 831

Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
           G ++    + + E  ++ + DTG G+   EL++  +PF +   +      GTGLGL ++K
Sbjct: 832 G-VVFRLRY-ARELAVIEIEDTGPGILKEELDEIFEPFARGSAANNSTVAGTGLGLTISK 889

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIF 808
            +     G+  + S    GT+ +I  
Sbjct: 890 MLTQLMGGELSVRSVVGSGTVFQIRL 915


>gi|222054943|ref|YP_002537305.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. FRC-32]
 gi|221564232|gb|ACM20204.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. FRC-32]
          Length = 661

 Score =  283 bits (724), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 78/527 (14%), Positives = 173/527 (32%), Gaps = 36/527 (6%)

Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
            +   D G ++         +   +     L   +     +  +++ + +        L 
Sbjct: 22  EALLSDMGLDMVKALSGNDALRLALKQDFALVLMDVQMPEMDGFETAELMRSNPKTRHLP 81

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
                +    +                  L       +  +         A +  E+  +
Sbjct: 82  IIFVTAGMKDMSYQFKGYDAGAVDYLLKPLEPAILRSKVRVFRALYTQRCALEERESTLE 141

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490
             +E    +       ++    +  +  E  + GIA +   G+++  N ++ +  GY   
Sbjct: 142 ALVEERTAELVRTTENLQESEERYRNAFELAAVGIAHVALNGLLVRVNASMCRDLGYDPG 201

Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
           ++ +            ++    +  +LS     + E       K   ++   + +     
Sbjct: 202 ELQKLTLAEITHGEDLALDQAEVQSLLS-GCTSSYEMEKRFLRKNGSIVWGHMAVALARG 260

Query: 551 SSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
            S     Y     +I+  KQ + +L  A+K+              ++H+    L+ IIG+
Sbjct: 261 ESGEPIHYITVFENITARKQLEQQLRQAQKM-----EAIGQLAGGIAHDFNNLLSVIIGY 315

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
              +   +     +       + I  +      +   LL  S+    K  +  +PV L+ 
Sbjct: 316 -GNLAQMKMDA--DDPLKCNLDQIIAAAEKAAQLTKGLLAFSR----KQEMKQQPVELNG 368

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726
            +     +++     + I + TSF      I  D   + Q+ +N+ +NA    P GG+  
Sbjct: 369 LIESVTKILK-RVIGEDIQLETSFHEGTLFINGDSGQIDQVLMNLATNARDAMPDGGKFT 427

Query: 727 ISTTHTS--------------NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           +ST                      ++ V D+G GM  + L+    PF          G+
Sbjct: 428 VSTALQEIEDSFIAMHGFGKPGAYALINVSDSGKGMDQHTLQNIFDPFFTTK----EVGK 483

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819
           GTGLG+ +   +V  + G   ++S P  GT   +  PL + +   + 
Sbjct: 484 GTGLGMSIVYGIVTQHNGYIKVYSEPDIGTTFRLYLPLIEDNQVEEA 530



 Score = 44.2 bits (103), Expect = 0.083,   Method: Composition-based stats.
 Identities = 10/112 (8%), Positives = 36/112 (32%), Gaps = 6/112 (5%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQ-NTWYGKTTL 149
           +G L  ++  + + +G    ++  + L +++    +  +   +  LL    +++  +   
Sbjct: 182 NGLLVRVNASMCRDLGYDPGELQKLTLAEITHGEDLALDQAEVQSLLSGCTSSYEMEKRF 241

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
               G+   V   +A       + E   +    +              ++  
Sbjct: 242 LRKNGSI--VWGHMAVALARGESGEPIHY--ITVFENITARKQLEQQLRQAQ 289


>gi|325522091|gb|EGD00759.1| two-component system capsular synthesis sensor histidine kinase
           [Burkholderia sp. TJI49]
          Length = 713

 Score =  283 bits (724), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 107/661 (16%), Positives = 210/661 (31%), Gaps = 47/661 (7%)

Query: 169 YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228
           Y  +++ +      +V         R    R       L  I    +         +   
Sbjct: 79  YDNDQQVTISPYPSVVFGVPGQTADRREIARYLSLSVLLARICAASAINRGYALVGYHYS 138

Query: 229 SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288
           +      +     +        +   +      +  E+    +         +      +
Sbjct: 139 THAGVFALVPNARTDDAALLTPEGRARAMDALRVDFED----QPSTGGHGRPHVRWLPPF 194

Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSF 348
              L    +      +  +    +    E        +   P     +    +F+   S 
Sbjct: 195 VDPLSGELRIRLAAQAQIDGEPFAVLVTEYAPDY--LLSWLPA----HPADGMFFVTTSD 248

Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML------YRSDRTCIAASARLHT 402
             L         + A     L         +  +PV                   A    
Sbjct: 249 NRLVATGPGIAQDDARITRLLRLDASRDLASTDEPVFRDGHVLFRGKLDNTGWTLAY--A 306

Query: 403 IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV----MQL-CSI 457
           + W    +                      +        +       +       L  S+
Sbjct: 307 LSWADVIANVALRAGLLLGASLLTIAIMWTLLVRFHHRMLAPVYARSQRVFDSESLCRSV 366

Query: 458 LEATSDGIAIINR-EGIILSTNRA-VSKL--FGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
           +E    G+ +I+R +G  +  +     ++   G     +  +            ++  Y 
Sbjct: 367 IEMAPIGLGLISRADGHFMLVSPVLAERIAQLGSDYRALSGQ------------IVEQYR 414

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH 573
           T   S  L+  L      +      L +     +        + + D++  +Q   +L  
Sbjct: 415 TRASSGPLQVDLVLPDAAADAAPLHLEVIACGARYQERDVLIVAVVDVTAKRQLVRQLEE 474

Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
           A + A+  ++ KS FLA +SHEIRTPL  I+G  E + ++    L           +  +
Sbjct: 475 AVRAADSANAAKSSFLAAMSHEIRTPLNVILGNLE-LLDRHALDLS---QRSRVRTLRTA 530

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693
              +L++V+ +LD SKIE+G M++      +   ++  +      A  K + +    A +
Sbjct: 531 AAGLLELVSGILDFSKIEAGAMSVESIEFDVMGVIARELGAFAPVAKAKGLSLFCEIAAS 590

Query: 694 -IPRILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDTGVGMT 749
              R+  D   + Q+  N+LSNAI FT  G    ++++        E+ + V DTG+G+ 
Sbjct: 591 RTQRMRGDPTRLAQVFGNLLSNAIKFTAQGHVTARVLVVRGECGAAELAIAVEDTGIGIG 650

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             +L K  K F Q+  +   R  GTGLGL L   +V A  G+  + S P  G+   +  P
Sbjct: 651 GADLHKLFKAFSQVDATITRRYGGTGLGLALCDRLVTAMGGRISVTSAPGAGSCFTVRVP 710

Query: 810 L 810
           L
Sbjct: 711 L 711


>gi|299134344|ref|ZP_07027537.1| PAS/PAC sensor signal transduction histidine kinase [Afipia sp.
           1NLS2]
 gi|298591091|gb|EFI51293.1| PAS/PAC sensor signal transduction histidine kinase [Afipia sp.
           1NLS2]
          Length = 507

 Score =  283 bits (724), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 78/486 (16%), Positives = 181/486 (37%), Gaps = 30/486 (6%)

Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399
                +P+   L    + + ++    LS +            + +    +D +      R
Sbjct: 35  RKLALSPTTRKLFGLSADESLDYTRFLSLI---EPEDRERTKRAIDRAIADVSHFDIQYR 91

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459
              I         +                  GI  +  + +  +  + I    L SILE
Sbjct: 92  ---ILSPHGTPHWVRTRSAVVK--QNGTAHMCGIVIDIEEQKQLEAALRIREGHLRSILE 146

Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL 519
              D + +I+  GI+   ++A  + FGY   + + +  ++ +     +  + YL    + 
Sbjct: 147 TIPDAMIVIDGRGIMQFFSKAAVRQFGYTEREAIGQNVSMLMPNPDSARHDGYLARYRAT 206

Query: 520 DLRQT--LEKITLGSTKEEKLLSLRIIIKKL--PFSSCYSLTMHDISEWKQEKNKLSHAK 575
             R    + +I  G  K+  +  + + I ++       ++  + D++E++Q + ++   +
Sbjct: 207 GERHIIGIGRIVSGKRKDGTIFPMHLSIGEMQTEGEPYFTGFVRDLTEYQQTQARMQELQ 266

Query: 576 KIAEKESS--HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI--EYANYID 631
                 S      +  + ++HE+  PL AI  + +  +        + R       +   
Sbjct: 267 SELVHVSRLTAMGEMASALAHELNQPLAAISNYMKGSRRLLASDTEDNRQKIESALDRAA 326

Query: 632 RSGNLVLDIVNDLLDI-SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
                   I+  L D  S+ ES K           + + EA +L    A E+ + +  + 
Sbjct: 327 EQAIRAGQIIRRLRDFVSRGESEKRVEKA-----SKLIEEAGALGLTGAREQGVSLHFNL 381

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ--IIISTTHTSNEEVILRVRDTGVGM 748
             +   +L D   ++Q+ +N+  NA+       Q  +I++++  +N+ + + V DTG G+
Sbjct: 382 EPDHDFVLVDRVQIQQVLVNLFRNALDAMTESTQRTMIVTSSRVANDMIEITVSDTGHGI 441

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
                 +  + F         +  G G+GL +++ +++A+ G+ +    PA G       
Sbjct: 442 AKEHQARMFQTFFTT------KITGMGVGLSISRTIIEAHGGRMWTEDNPAGGATFRFTL 495

Query: 809 PLYDTS 814
           P   + 
Sbjct: 496 PAAPSE 501



 Score = 40.8 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 39/397 (9%), Positives = 96/397 (24%), Gaps = 30/397 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIG-MRLCDVSDILHIDP-NNHIGDLLKRQNTW 143
           TW++D       +S    K  G  A + +   R   + +    +     I   +   + +
Sbjct: 27  TWDLDLATRKLALSPTTRKLFGLSADESLDYTRFLSLIEPEDRERTKRAIDRAIADVSHF 86

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +  +    GT  +V        +  +N         GIV          A  +  +  
Sbjct: 87  DIQYRILSPHGTPHWVRTR---SAVVKQNGT---AHMCGIVIDIEEQKQLEAALRIREGH 140

Query: 204 FSHLHEIKKGHSSVEK----------EKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253
              + E       V                 F         +  + +    +   H   +
Sbjct: 141 LRSILETIPDAMIVIDGRGIMQFFSKAAVRQFGYTEREAIGQNVSMLMPNPDSARHDGYL 200

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
            +             +         +   +      G +Q   +  F             
Sbjct: 201 ARYRATGER--HIIGIGRIVSGKRKDGTIFPMHLSIGEMQTEGEPYFTGFVRDLTEYQQT 258

Query: 314 YFDEGENLTPET-------VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
                E  +          + +         +  L   +       +  + D  +    +
Sbjct: 259 QARMQELQSELVHVSRLTAMGEMASALAHELNQPLAAISNYMKGSRRLLASDTEDNRQKI 318

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
            + LD        A + +   R   +   +  R+       E + A+      +      
Sbjct: 319 ESALDRAAEQAIRAGQIIRRLRDFVSRGESEKRVEKASKLIEEAGALGLTGAREQGVSLH 378

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
              +   +   VD    ++ +   V    + L+A ++
Sbjct: 379 FNLEPDHDFVLVDRVQIQQVL---VNLFRNALDAMTE 412



 Score = 39.2 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 32/329 (9%), Positives = 93/329 (28%), Gaps = 9/329 (2%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G ++  S+   +  G    + IG  +  +    + D   H G L + + T      
Sbjct: 155 IDGRGIMQFFSKAAVRQFGYTEREAIGQNVSMLMP--NPDSARHDGYLARYRATGERHII 212

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF-GIVHVNRVDNDPRALGKRLDKKFSHL 207
                 +       +  + +     +  G   F G V         +A  + L  +  H+
Sbjct: 213 GIGRIVSGKRKDGTIFPMHLSIGEMQTEGEPYFTGFVRDLTEYQQTQARMQELQSELVHV 272

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
             +           +++    +   +    ++    ++   ++   +++           
Sbjct: 273 SRLTAMGEMASALAHELNQPLAAISNYMKGSRRLLASDTEDNR-QKIESALDRAAEQAIR 331

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
           +               ++K+     +   +     L+      +S +F+   +     VD
Sbjct: 332 AGQIIRRLRDFVSRGESEKRVEKASKLIEEAGALGLTGAREQGVSLHFNLEPDHDFVLVD 391

Query: 328 KCP-----IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
           +       +  F  +   +  +    +++T  +  +D+       T     K       +
Sbjct: 392 RVQIQQVLVNLFRNALDAMTESTQRTMIVTSSRVANDMIEITVSDTGHGIAKEHQARMFQ 451

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSL 411
                +     +  S     I+ +     
Sbjct: 452 TFFTTKITGMGVGLSISRTIIEAHGGRMW 480


>gi|302879166|ref|YP_003847730.1| multi-sensor signal transduction histidine kinase [Gallionella
           capsiferriformans ES-2]
 gi|302581955|gb|ADL55966.1| multi-sensor signal transduction histidine kinase [Gallionella
           capsiferriformans ES-2]
          Length = 760

 Score =  283 bits (724), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 96/511 (18%), Positives = 199/511 (38%), Gaps = 36/511 (7%)

Query: 320 NLTPETVDKCPIPFFVYSHGNLFYANPSF-LLLTKYKSVDDIE----IAGGLSTLLDAPK 374
               +  +       +   G     NPS    L   +++   +     A  L+ +    +
Sbjct: 268 RKLKDNEEALLQAQQLARLGRWE-WNPSTNECLLSKEALQFFDFPDKRAYSLNEVFARMQ 326

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
           + D  A+   M             ++       E             +     +  +G  
Sbjct: 327 VQDQQAVDAAMRRLQQGG-DPFELKISITHS--EPHRFAQLRGAAVRDDTGLVIRVSGTL 383

Query: 435 PEDVDTRINKRKM--EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
            +  D +  +  +    +  +   +L+   DGI +++  G ++  N     + GY  E++
Sbjct: 384 QDISDEQRLQEVLSVAKDKEKFELLLQTAGDGIHLLDAGGNVVEVNDMFCHMLGYTREEL 443

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
           L+     +      +     L E L  +  Q+    T    K   ++ + I  K + +  
Sbjct: 444 LKMNVAQW----DANFSLQALAEKLKENFTQSNLFETKHRRKNGAIIDVEISAKAISYGG 499

Query: 553 CYSL--TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
              L     DISE K  + ++       ++ ++    F   VSH++R PL  +  + +++
Sbjct: 500 VPVLWNASRDISERKYAEERM-------KRTNAELEQFSYAVSHDMRQPLRMVASYLQLL 552

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
           + +    L + +   Y NY       +  ++  LLD S+I  G+    F PV    A+ E
Sbjct: 553 ELELGETLDDEK-RSYFNYAVDGAKRIDRMLEALLDYSRI--GRSADPFIPVDCRGALDE 609

Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS-T 729
           A+  +Q    + +  +  S A   P + A    + ++  N++ NA+ +  +G  + IS T
Sbjct: 610 AMKYLQPDILDAQADV--SIAGVWPELFASRDELVRLFQNLIGNAVKYRVAGRPVKISVT 667

Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
           +   + E  L + D GVG+   ++ +  K F ++    +   EGTG+GL L + +V+ + 
Sbjct: 668 SKIDSGEWSLCIEDNGVGINPVQINRLFKVFQRL--QTRDDYEGTGIGLALCRKIVEHHH 725

Query: 790 GKFYIFS-TPAKGTLIEIIFPL---YDTSHP 816
           G+ ++ S    +G    +  P+    DTS P
Sbjct: 726 GEIWVESDGEGQGCRFYVKLPVNHAVDTSLP 756



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/245 (10%), Positives = 57/245 (23%), Gaps = 15/245 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +DA G + E+++     +G    +++ M +        +     + + LK   T      
Sbjct: 419 LDAGGNVVEVNDMFCHMLGYTREELLKMNVAQWDANFSLQ---ALAEKLKENFTQSNLFE 475

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIV----HVNRVDNDPRALGKRLDKKF 204
                     + ++++A  I         + G  ++                 KR + + 
Sbjct: 476 TKHRRKNGAIIDVEISAKAIS--------YGGVPVLWNASRDISERKYAEERMKRTNAEL 527

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
                               + Q          +        YA             L  
Sbjct: 528 EQFSYAVSHDMRQPLRMVASYLQLLELELGETLDDEKRSYFNYAVDGAKRIDRMLEALLD 587

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
                   + F  ++      +       +      +       P L A  DE   L   
Sbjct: 588 YSRIGRSADPFIPVDCRGALDEAMKYLQPDILDAQADVSIAGVWPELFASRDELVRLFQN 647

Query: 325 TVDKC 329
            +   
Sbjct: 648 LIGNA 652


>gi|222056645|ref|YP_002539007.1| multi-sensor signal transduction histidine kinase [Geobacter sp.
            FRC-32]
 gi|221565934|gb|ACM21906.1| multi-sensor signal transduction histidine kinase [Geobacter sp.
            FRC-32]
          Length = 1001

 Score =  283 bits (724), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 82/655 (12%), Positives = 202/655 (30%), Gaps = 45/655 (6%)

Query: 185  HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244
                         +  ++ F           ++                +   ++     
Sbjct: 366  KHATELESLSKKLRESEELFREFFANAPIGLAIFGLDGRFQEVNQAYCRIIGYDREEVFQ 425

Query: 245  EYYAH-------KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297
              +           +    E   +L  E SS   ++     + +    +      ++   
Sbjct: 426  PGFTFMKVTHHDDIEENLAELNRVLKGETSSFFIEKRNIRKDGSIIWVRVSATQCRDPEG 485

Query: 298  ESFEYLSHRNHPSLSAYFDEGENLTPE----TVDKCPIPFFVY--SHGNLFYANPSFLLL 351
            +S   ++           +E   ++        D      F+     G +   N   L +
Sbjct: 486  KSARLIAIVEDIHDRKQAEEALRVSEANYRTIFDSANDGLFIQCAESGAILDVNQRVLEM 545

Query: 352  TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411
             KY+  + + +  G   L              V    +                      
Sbjct: 546  YKYRYDEILRLNIG--ELSAYSAGYTQERAMEVGRRAASGEPQLVEWLALA---KDGTQF 600

Query: 412  AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC-----SILEATSDGIA 466
             +     +      +      +  +  + +     ++    +L       +L  ++ GI 
Sbjct: 601  WVEVSLKKVILGGKD--RLLAVVRDISERKRVLEALQQNEERLRVSEDRLVLAQSAAGIG 658

Query: 467  IINREG--IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
            + N        + +     L G        + F   L  +    +     + ++    + 
Sbjct: 659  MWNVNLLTRESTFSNQYLSLLGIDRPPGSYEDFLALLHPDDRYQVMMETDQAIAQ--CRQ 716

Query: 525  LEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEK 580
             + +   +     L  +         S       +  + D+++ K+ +  L  A    E+
Sbjct: 717  FQAMFRVNWNNGSLRWIMGRGGVFCDSRQQPLRITGVIFDVTDRKKAEEDLKAAMDELER 776

Query: 581  ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
             +     F    SH+++ PL  + G+   +  +R+    + +   Y N+     + +  +
Sbjct: 777  SNRELEQFAYIASHDLQEPLRMVAGYV-KLLERRYKESLDEKAQTYINFAVDGTSRMQKL 835

Query: 641  VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILAD 700
            +  LL  S+I  G   +   PV  +   + A++ +     E    I    +  +P +  D
Sbjct: 836  IEGLLTYSRISRG---ISLLPVDTNIPFAAALANLDSAIRESNARIT---SETLPVVEGD 889

Query: 701  LRSVKQIALNILSNAIHFTPS--GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
               + Q+  N+L+N++ +       QI +S     NE +   V+D G+G+     ++  +
Sbjct: 890  ETQLMQLFQNLLANSLKYRKKCIPPQIYVSARREGNEWL-FSVQDNGIGIERGYYDEIFQ 948

Query: 759  PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
             F ++        +GTG+GL   K +V+ + GK ++ S P +G+      P   +
Sbjct: 949  IFRRLHAQD--EYQGTGIGLASCKKIVERHGGKIWVESEPGEGSTFFFTMPAARS 1001



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 38/384 (9%), Positives = 108/384 (28%), Gaps = 26/384 (6%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMI--GMRLCDVSDILHIDPNNHIGDLLKRQNTWYG-- 145
              G  +E+++   + IG    ++   G     V+    I+ N    + + +  T     
Sbjct: 400 GLDGRFQEVNQAYCRIIGYDREEVFQPGFTFMKVTHHDDIEENLAELNRVLKGETSSFFI 459

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +      +G+   + + ++A        +    R   IV             +  +  + 
Sbjct: 460 EKRNIRKDGSI--IWVRVSATQCRDPEGK--SARLIAIVEDIHDRKQAEEALRVSEANYR 515

Query: 206 HLHEIKKGHSSV---EKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
            + +       +   E       +Q+    +    +++  L            T++  + 
Sbjct: 516 TIFDSANDGLFIQCAESGAILDVNQRVLEMYKYRYDEILRLNIGELSAYSAGYTQERAME 575

Query: 263 TSEESSLPEQEDFHTI----NLNQYTKKQYFGT--LQNNSKESFEYLSHRNHPSLSAYFD 316
               ++  E +    +    +  Q+  +       L    +             +     
Sbjct: 576 VGRRAASGEPQLVEWLALAKDGTQFWVEVSLKKVILGGKDRLLAVVRDISERKRVLEALQ 635

Query: 317 EGENLTPETVDKCPIPFFVYSHGNLFYAN-----PSFLLLTKYKSVDDIEIAGGLSTLLD 371
           + E     + D+        S   +   N            +Y S+  I+   G      
Sbjct: 636 QNEERLRVSEDRL---VLAQSAAGIGMWNVNLLTRESTFSNQYLSLLGIDRPPGSYEDFL 692

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
           A    D+     +   ++   C    A +  + WN  +   +        +   + +   
Sbjct: 693 ALLHPDDRYQVMMETDQAIAQCRQFQA-MFRVNWNNGSLRWIMGRGGVFCDSRQQPLRIT 751

Query: 432 GIEPEDVDTRINKRKMEIEVMQLC 455
           G+  +  D +  +  ++  + +L 
Sbjct: 752 GVIFDVTDRKKAEEDLKAAMDELE 775



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 38/359 (10%), Positives = 99/359 (27%), Gaps = 21/359 (5%)

Query: 227 QQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKK 286
                  + +  K + L +   + ++  +  +  +L + +  +        +      + 
Sbjct: 158 ANKAASTITLALKNALLLQERINAEEAARANEQKVLQTLDRLMILVGVSSAVLSETTIQG 217

Query: 287 QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP--IPFFVYSHGNLFYA 344
                ++     +   ++   H         G       +  CP  + F +   G     
Sbjct: 218 TLNRAVEGAIAVTDAQVATSGHGYKEGSITIGALAYDAPLSPCPTDVTFTINRGG----- 272

Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
              ++ L +  S          +          +  +K ++  R + T   A   +    
Sbjct: 273 --VYMELLQKSSTIRFTQKELENHPEWWGLPEGHAPLKGLLGARLEGTGGEACGMILVSH 330

Query: 405 WNRENS-----LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459
                      + +T +    +        +N +E    +     +K+            
Sbjct: 331 KRHGEFTEEDEVMLTQLCQLTSLAIRHIEARNVVEKHATELESLSKKLRESEELFREFFA 390

Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL--RKPFTVFLEQNTPSVMNHYLTEIL 517
               G+AI   +G     N+A  ++ GY  E++      F      +        L  +L
Sbjct: 391 NAPIGLAIFGLDGRFQEVNQAYCRIIGYDREEVFQPGFTFMKVTHHDDIEENLAELNRVL 450

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLS 572
             +             K+  ++ +R+   +              + DI + KQ +  L 
Sbjct: 451 KGETSSFF-IEKRNIRKDGSIIWVRVSATQCRDPEGKSARLIAIVEDIHDRKQAEEALR 508


>gi|119715355|ref|YP_922320.1| ATPase domain-containing protein [Nocardioides sp. JS614]
 gi|119536016|gb|ABL80633.1| ATP-binding region, ATPase domain protein [Nocardioides sp. JS614]
          Length = 847

 Score =  283 bits (724), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 76/290 (26%), Positives = 144/290 (49%), Gaps = 19/290 (6%)

Query: 534 KEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
           +   ++ + + +  L   + +      +      + +L+ A+ +A + S  KS FLA +S
Sbjct: 283 RSPHVVEVSVGMTALVAIA-FVRMGRMLQWEVVARRELAAARDVALEASRSKSTFLATMS 341

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HEIRTP+  +IG + +++        + R  +YA  +  + N ++ I+ND+LD SK+E+G
Sbjct: 342 HEIRTPMNGVIGLTGLLEATDL----DERQRQYAEGVSSAANALMTIINDILDFSKVEAG 397

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNIL 712
           +++L      L + V E   L+   A  K + +    +  +P  +  D   ++Q+ LN+ 
Sbjct: 398 RLDLETIDFDLVQVVEEVAELIAEPAQSKGLELLAYCSPELPTCLRGDPSRLRQVLLNLA 457

Query: 713 SNAIHFTPSGGQIIISTTHTSNEE------------VILRVRDTGVGMTNYELEKAMKPF 760
           SNA+ FT  G ++++  +  ++ +            V   V DTG+G+   + E+  +PF
Sbjct: 458 SNAVKFTARG-EVLVRASLEASLQDGPEAGAEAGVVVRFEVTDTGIGVEEADRERLFEPF 516

Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            Q  +S   R  GTGLGL +++ +V A  G+  + S P  G+      PL
Sbjct: 517 SQADSSTTRRYGGTGLGLAISEHLVTAMGGQIGVDSRPGLGSTFWFTLPL 566


>gi|317051142|ref|YP_004112258.1| ATPase ATP-binding domain-containing protein [Desulfurispirillum
            indicum S5]
 gi|316946226|gb|ADU65702.1| ATP-binding region ATPase domain protein [Desulfurispirillum indicum
            S5]
          Length = 1150

 Score =  283 bits (724), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 77/322 (23%), Positives = 144/322 (44%), Gaps = 9/322 (2%)

Query: 497  FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS--TKEEKLLSLRIIIKKLPFSSC- 553
                +  +  S    ++        +              +++++ L   +     SS  
Sbjct: 827  IRKHIHPDDWSRYRSHMQAAARQASQVDYHGELEYRALRCDKQMIHLHDHVIGFRDSSAA 886

Query: 554  ---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
                     DIS  K+ +  L  ++  +E  +  KS F+A +SHE+RTPL AIIG+SE++
Sbjct: 887  LPSIFGATRDISRHKETEIMLLESRNRSELANRVKSQFMANMSHELRTPLNAIIGYSEML 946

Query: 611  KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
            + +         Y +    + ++G  +L I+ND+LD++ +ES    L  E   +     +
Sbjct: 947  QEEYRSDPQGQIYQD-MERVQKAGRQLLQIINDILDMADLESQTAQLQAESFDICSEARQ 1005

Query: 671  AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ-IIIST 729
                VQ   ++    +      NI  + +D + ++Q+ +++L+NA  FT +G   + +S 
Sbjct: 1006 VAQSVQAAIHKNGNTLDVRCDENIGTMYSDRQKIRQVLIHLLNNAGRFTENGQVALTVSA 1065

Query: 730  THTSNE-EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                +E  V+LRVRDTG+G+     E+  +PF    +S      G+GLGL +++   +  
Sbjct: 1066 EQRHSEPWVLLRVRDTGIGIDPSIHEQIFEPFTLGDSSSTRLYGGSGLGLSISRRFCEMM 1125

Query: 789  MGKFYIFSTPAKGTLIEIIFPL 810
             G   + S   KG    +  PL
Sbjct: 1126 GGAITLQSETGKGAEFTVALPL 1147


>gi|94499898|ref|ZP_01306434.1| two-component sensor PhoR [Oceanobacter sp. RED65]
 gi|94428099|gb|EAT13073.1| two-component sensor PhoR [Oceanobacter sp. RED65]
          Length = 433

 Score =  283 bits (724), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 79/412 (19%), Positives = 160/412 (38%), Gaps = 40/412 (9%)

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL----EA 460
           W+ +    +     ++  + P +    G   +DV     +        +L ++L    ++
Sbjct: 43  WHLKQLHKLHLWLQDQEEEPPTSHGLWGSTFDDVYRLQRRN--RKARARLKAVLKRVQDS 100

Query: 461 TS---DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
           T+   DG+ +++  G +   N+A S+L G      +  P T  +   +       +    
Sbjct: 101 TAALKDGVLMVDSNGNLEWWNKAASRLLGLREGSDINHPITNLVRDPSFKSYFDRIEYDT 160

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI 577
            L++   +               L   I  L       +   D+++ +  +         
Sbjct: 161 PLEINSPINHDVR----------LEFHIT-LFGRQDRLILCRDVTQLRHLE--------- 200

Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
                + + DF+A  SHE+RTPLT I G+ E   +  +      R+      +      +
Sbjct: 201 -----AMREDFVANASHELRTPLTVISGYLETFLD--YQDTLPSRWGRAIKQMHEQSQRM 253

Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697
            +++NDLL +S++E+   +    PV++   +          +  K+  I     +    I
Sbjct: 254 QNLINDLLLLSRLET-THSPDHSPVAVVSMLKRLQGDAITISQNKKHSIELEAED--VDI 310

Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757
           L     +     N++ NA+ +TP  G+I I   +   + V L V+D G+G+    + +  
Sbjct: 311 LGMDTELSSAFGNLVFNAVKYTPENGKIKIHW-YRDEQGVHLSVKDNGLGIDERHIPRLT 369

Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           + F +   S+     GTGLGL + K ++  + G+  I S    G+     FP
Sbjct: 370 ERFYRADASRHSNTGGTGLGLAIVKHVLLRHGGRLEIKSKLGAGSEFLCHFP 421


>gi|229016308|ref|ZP_04173254.1| hypothetical protein bcere0030_8850 [Bacillus cereus AH1273]
 gi|229022547|ref|ZP_04179077.1| hypothetical protein bcere0029_8980 [Bacillus cereus AH1272]
 gi|228738742|gb|EEL89208.1| hypothetical protein bcere0029_8980 [Bacillus cereus AH1272]
 gi|228744955|gb|EEL95011.1| hypothetical protein bcere0030_8850 [Bacillus cereus AH1273]
          Length = 896

 Score =  283 bits (724), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 78/341 (22%), Positives = 150/341 (43%), Gaps = 24/341 (7%)

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            +D++++            +    +  +L      T E        + +   L++  ++L
Sbjct: 395 HQDLIQQTVDNLGLTIHSIMGRMRIQTLLHESQAMTEELQVQSEELQTQAEELQMQAEEL 454

Query: 549 PFSSCYSLTMHDISEWKQEK-----NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
             ++    +  + +E K        ++L        + S +KS+FLA +SHE+RTPL +I
Sbjct: 455 RTTNEQLESRTEEAEQKTADLQITKSELEEKASELLRSSKYKSEFLANMSHELRTPLNSI 514

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +  SE+++      L +    E A  I  SG  +L ++ND+LD+SK+E+GK+++ FE  +
Sbjct: 515 LLLSEMLRENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDIIFEATN 573

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSG 722
           + +  +         A +K +      ++ IP +   D + ++QI  N+LSNA  FT  G
Sbjct: 574 ISDMAANMHQNFLHIAAQKNVEFMIEDSDTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKG 633

Query: 723 GQIIISTTHTS--------------NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
               +S    S               + + + V+DTG+G+   + +   + F Q   +  
Sbjct: 634 S---VSLHFDSIETTNLSHDMQSISKDWITISVKDTGIGIATEQHQLIFEAFQQADGATI 690

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            +  GTGLGL + K       G   + S   +G+   +  P
Sbjct: 691 RKYGGTGLGLSICKEFARLLGGWITLESNVGEGSTFTVYIP 731


>gi|225419699|ref|ZP_03762002.1| hypothetical protein CLOSTASPAR_06037 [Clostridium asparagiforme
           DSM 15981]
 gi|225041663|gb|EEG51909.1| hypothetical protein CLOSTASPAR_06037 [Clostridium asparagiforme
           DSM 15981]
          Length = 926

 Score =  283 bits (724), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 80/262 (30%), Positives = 140/262 (53%), Gaps = 10/262 (3%)

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKE-SSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
           + +++  +S   + +N L  ++  A +  S+ KS FL+++SHEIRTP+ AIIG +++   
Sbjct: 525 FIMSVILMSVRSRMRNALLQSRLEAAEAKSTAKSVFLSQMSHEIRTPMNAIIGLTDLTCK 584

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
           +R  P   P   +    I  S   +L ++ND+LD+S+IE+GKM +  +  SL   + E  
Sbjct: 585 ERDVP---PEIEKKLKKIRSSSQYLLALINDILDMSRIENGKMEIEQKDFSLSLVLQELQ 641

Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST--- 729
           S++   A +K +  +  F  +   +  D   ++Q+ +N+LSNA+ FTP+GG++ +     
Sbjct: 642 SMMSTQAEQKGLEFQVDFYVSHDWLAGDPVRLRQVLINLLSNAVKFTPAGGKVTLRVNEQ 701

Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
           +     E    V+DTGVG+   + E+    F Q+  S      GTGLGLP+++ +     
Sbjct: 702 SCGEEMEYRFSVQDTGVGIPYEDQERIFSSFEQLRPSISHSA-GTGLGLPISRNIARLMG 760

Query: 790 GKFYIFSTPAKGTLI--EIIFP 809
           G   + S P KG+     + FP
Sbjct: 761 GDLEVKSEPGKGSEFYMTLRFP 782


>gi|311693679|gb|ADP96552.1| multi-sensor hybrid histidine kinase [marine bacterium HP15]
          Length = 957

 Score =  283 bits (724), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 80/246 (32%), Positives = 133/246 (54%), Gaps = 12/246 (4%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  A+K A + S  KS+FLA +SHEIRTPL  IIGF+E++           +  ++ + 
Sbjct: 277 ELDFARKEALEASRIKSEFLANMSHEIRTPLNGIIGFTELLLKSPLPR----QQRDHLST 332

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I +S  ++L I+ND+LD SKIE+GK+ L   P  L + V E + ++   A+ K + +   
Sbjct: 333 IRKSSEILLTIINDILDFSKIEAGKLILDRVPFQLRDIVEEVMVMLAPAAHAKNLDLVPL 392

Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE------EVILRVR 742
             N++P  I+ D   VKQ+  N+++NAI FT +G ++++  +    E       + L + 
Sbjct: 393 VYNDVPDNIMGDPLRVKQVITNLVNNAIKFTQTG-EVVLRASLEEEEADTNRVTLRLSIT 451

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D+GVG++  + +     F Q   S   +  GTGLGL ++K +V+   GK  + S   KG+
Sbjct: 452 DSGVGLSRAQQQSLFNAFSQADASTARQYGGTGLGLAISKRLVEEMGGKIGLESELGKGS 511

Query: 803 LIEIIF 808
                 
Sbjct: 512 TFWFTL 517


>gi|83765603|dbj|BAE55746.1| unnamed protein product [Aspergillus oryzae]
          Length = 2341

 Score =  283 bits (724), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 74/250 (29%), Positives = 126/250 (50%), Gaps = 10/250 (4%)

Query: 565  KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
            K  + +  H  K+ E  +  KS FLA +SH++RTP+  +IG SE++K  +     +    
Sbjct: 1872 KVAEAEAKHNVKLKEDAAKAKSIFLANISHDLRTPMNGVIGLSELLKATKL----DKEQD 1927

Query: 625  EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
            EY   I    + +L ++ND+LD SK+E+GKM +   P+++ E +SE +  ++    ++ +
Sbjct: 1928 EYVESIRVCADTLLTLINDILDFSKLEAGKMKISTVPLNIKETISEVVRALRYTHRDRGL 1987

Query: 685  LIRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL-- 739
                      P   +L D   + QI +N+LSN+  FTP G   +    T      + L  
Sbjct: 1988 ETIEDLEKVPPDLVVLGDPVRLHQIFMNLLSNSYKFTPKGSVTVRARVTREGKGRIRLEC 2047

Query: 740  RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA-NMGKFYIFSTP 798
             V DTG+G+   +  +  +PF Q  +S      G+GLGL + KA+++    G  ++ STP
Sbjct: 2048 SVSDTGIGIPEEQKSRLFRPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGAIWLDSTP 2107

Query: 799  AKGTLIEIIF 808
              GT +    
Sbjct: 2108 GVGTTVTFHL 2117


>gi|255936613|ref|XP_002559333.1| Pc13g09080 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211583953|emb|CAP91977.1| Pc13g09080 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 2272

 Score =  283 bits (724), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 74/272 (27%), Positives = 129/272 (47%), Gaps = 11/272 (4%)

Query: 544  IIKKLPFSSCYSLTMHDISEW-KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
                +           +  +  K  + +  H  K+ E  +  KS FLA +SH++RTP+  
Sbjct: 1791 NASMIESQKRALALAREAEQKAKIAEAEAKHNVKLKEDAARAKSIFLANISHDLRTPMNG 1850

Query: 603  IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
            +IG SE++K        +    EY   I    + +L ++ND+LD SK+E+GKM +   P+
Sbjct: 1851 VIGLSELLKGTYL----DKEQDEYVESIRVCADTLLTLINDILDFSKLEAGKMKISTVPL 1906

Query: 663  SLDEAVSEAISLVQLYANEKRILIRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTP 720
            +L + +SE I  ++    ++ +    +     P   +L D   + QI +N+LSN+  FTP
Sbjct: 1907 NLKQTISEVIRALRYTHRDRGLETIENLDKVPPELVVLGDPVRLHQIFMNLLSNSYKFTP 1966

Query: 721  SGG-QIIISTTHTSNEEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
            +G   +           V L   V DTG+G+ + +  +  +PF Q   S +    G+GLG
Sbjct: 1967 AGSVTVKARVAREGTGRVRLECSVSDTGIGIPDEQKARLFRPFSQADASTERSYGGSGLG 2026

Query: 778  LPLAKAMVDA-NMGKFYIFSTPAKGTLIEIIF 808
            L + KA+++    G  ++ S P  GT +    
Sbjct: 2027 LSICKAIIEDVLGGAIWLESKPGVGTTVTFHL 2058


>gi|294645005|ref|ZP_06722736.1| PAS domain S-box [Bacteroides ovatus SD CC 2a]
 gi|294806981|ref|ZP_06765803.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b]
 gi|292639654|gb|EFF57941.1| PAS domain S-box [Bacteroides ovatus SD CC 2a]
 gi|294445816|gb|EFG14461.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b]
          Length = 862

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 94/538 (17%), Positives = 184/538 (34%), Gaps = 37/538 (6%)

Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANP 346
               ++ N +ES   +  +    +     E  N               Y    ++ + N 
Sbjct: 342 IVWLMRANRRESKRRIQAQTRLLVQNKLVEQRNEFDNVFHSIRDGVITYDTDLHIHFTNR 401

Query: 347 SFLLLTKYKSVD--DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC--IAASARLHT 402
           S L +                  ++        +   K +    S      I   A +  
Sbjct: 402 SLLQMLHLPYEAGGRFYEGMMAGSIFKIYYNGQDILHKMLKQVASKGESVKIPQGAFMKE 461

Query: 403 IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
           +  ++   ++   +P    +             ++          E++       ++ +S
Sbjct: 462 VHSDKYFPVSGEIVPIRSKDAITGMALSARNISDE----------EMQKRFFDMAVDESS 511

Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVE--DILRKPFTVFLEQNTPSVMNHYLTEILSLD 520
                 + E       +   K  GY      I R      +  +    +       L   
Sbjct: 512 IYPWQFDMETNCFIFPQGFLKRLGYDESVTTIPRDEMDRTIHPDDLKEIRPLFNRAL-TG 570

Query: 521 LRQTLEKITLGSTKEEKLLSLRII---IKKLPFSSCY--SLTMHDISEWKQEKNKLSHAK 575
                           +          I  L   S Y        I  +K  + ++  A+
Sbjct: 571 EDSNTRLNFRQRNVNGEYEWWEYRSSVITGLTQDSLYNILGVCQSIQRYKTAEQEMREAR 630

Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
             A +    KS FLA +SHEIRTPL AI+GFS+++ +       +    ++   I+++  
Sbjct: 631 DKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDT--SGFTSEEITQFIGTINKNCG 688

Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN-NI 694
           L+L ++ND+LD+S+IESG M   F   +L   +       +L      + +       + 
Sbjct: 689 LLLALINDILDLSRIESGTMEFMFAEHNLPLLLKTVHDSQRLNMPP-GVELVLRMPESDK 747

Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN---EEVILRVRDTGVGMTNY 751
             +  D   ++Q+  N+++NA  FT SG    I+  +  +       + V DTGVG++  
Sbjct: 748 KYLTTDNVRLQQVVNNLINNAAKFTSSG---FITFGYEDDEVPGYTRIFVEDTGVGISEE 804

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            +    + F ++ N      +G GLGL + + +++   G   + S   KGT   +  P
Sbjct: 805 GIRHIFERFYKVDNFT----QGAGLGLSICQTIIERLNGTISVTSEVGKGTRFTVRLP 858


>gi|237748048|ref|ZP_04578528.1| two-component hybrid sensor kinase/response regulator [Oxalobacter
           formigenes OXCC13]
 gi|229379410|gb|EEO29501.1| two-component hybrid sensor kinase/response regulator [Oxalobacter
           formigenes OXCC13]
          Length = 796

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 97/378 (25%), Positives = 162/378 (42%), Gaps = 26/378 (6%)

Query: 456 SILEAT----SDGIAII--NREGIILS-TNRAVSKLF----GYPVEDILRKPFTVFLEQN 504
           +I+E       D +  I  +    IL   N     L     G    + + +  T      
Sbjct: 136 TIVETAVKTEYDYVVYIEADTNSYILYTANYESGTLLPPVVGMDYTEEMIRFNTAHCPPG 195

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK---KLPFSSCYSLTMHDI 561
               +   +     L+   T  +  + +   E        I+        +    T  DI
Sbjct: 196 DREKLIAEMRLDNLLEKLSTANEHVIYTQMYENDRLAYKKIRFSFYDRSHNILLATRTDI 255

Query: 562 SE---WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
           +E    +Q+K  L  A   A   +  KS+FL+R+SH+IRTP+ AIIG + +         
Sbjct: 256 TEIINERQQKKLLQDALNAANVANRAKSEFLSRMSHDIRTPMNAIIGMTAIAGAHL---A 312

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
              R  +    I  S  L+L ++N++LD++KIESG++ L  E V+L + V+  +S++Q  
Sbjct: 313 NQERMSDCLQKITTSSRLLLSLINEVLDMAKIESGRIILSEEEVNLGDLVTSLLSMIQPD 372

Query: 679 ANEKRILIRTSF-ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN--- 734
             +K           +   ++ D + ++Q+ LN LSNAI +TP  G I+   T   +   
Sbjct: 373 LKKKGHRFDVHLFNIDEEWVICDSQRIQQVLLNFLSNAIKYTPDNGHIVFEITQLPSSEN 432

Query: 735 --EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
              +     RD G+GMT   LEK  +PF +         +GTGLG+ +AK + +   G  
Sbjct: 433 GFGKYRFIFRDNGIGMTPGFLEKVFEPFERADEVSIQSIQGTGLGMAIAKNIAEIMGGHI 492

Query: 793 YIFSTPAKGTLIEIIFPL 810
            + S   KGT   +  P+
Sbjct: 493 GVESEHGKGTTFTLTIPM 510


>gi|237746472|ref|ZP_04576952.1| two-component hybrid sensor kinase/response regulator [Oxalobacter
           formigenes HOxBLS]
 gi|229377823|gb|EEO27914.1| two-component hybrid sensor kinase/response regulator [Oxalobacter
           formigenes HOxBLS]
          Length = 765

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 83/254 (32%), Positives = 136/254 (53%), Gaps = 9/254 (3%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           + +  +N L  A + A+  ++ KS FL  +SH+IRTP+ AIIG +  +           R
Sbjct: 227 QEETMQNALREALESAQNANAAKSQFLFNMSHDIRTPMNAIIGMT-TLATLHLHEPS--R 283

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             +    I  S   +L ++ND+LD+SKIESGK+ L+ E   L E V+   +++Q  A+ +
Sbjct: 284 IRDCLGKISASSRHLLGLINDVLDMSKIESGKIALNNEEFDLPELVAGLFTILQQQASSR 343

Query: 683 RILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST-----THTSNEE 736
           R+ +  S +  +  +++ D   V QI LN++ NA+ FTP+GG+I ++       +     
Sbjct: 344 RLDLDISVSGIDHEKVIGDTLRVNQILLNLMGNALKFTPAGGRIRLAITELPPQYPGYGT 403

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
               V DTG+GM +  L+K   PF +   +   + EGTGLG+ + K +VD   G+  + S
Sbjct: 404 YRFVVSDTGIGMDSDFLKKIYNPFERAKTATGSKIEGTGLGMAITKNIVDMMNGQIDVQS 463

Query: 797 TPAKGTLIEIIFPL 810
            P KGT   +  PL
Sbjct: 464 EPGKGTTFTVTLPL 477


>gi|301310964|ref|ZP_07216893.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
 gi|300831027|gb|EFK61668.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
          Length = 769

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 81/382 (21%), Positives = 151/382 (39%), Gaps = 33/382 (8%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTN------RAVSK-----LFGYPVEDI 492
            R+ +    +   +L+A++      +    I+  N      R+        +F    ++ 
Sbjct: 399 ARQAQDLNQKYQLVLKASNMMTWTWDVRAEIIECNNVYLTQRSARDKGVNGIFKMSPDE- 457

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK-----K 547
               F   +  +    +   +  + S + +   E+I       E  + + I         
Sbjct: 458 ----FYSGVYPDDLDRLRDKMEALASGEGQPVDEEIRYLDDTGENYIWIEIYAITGKTDP 513

Query: 548 LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
           +            I + K  + +L   K   E+ +  KS FLA +SHEIRTPL AI+GFS
Sbjct: 514 VGKPIYLIGGTALIHQRKLMEQELRD-KAKVEESNRLKSAFLANMSHEIRTPLNAIVGFS 572

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
            ++         +    E+   I+ +  L+L +VND+LD+SKIE+G+M+  +   ++   
Sbjct: 573 NLLAQTN----PSEETKEFCEIIETNNELLLQLVNDILDLSKIEAGQMDFIYSEFNVSTL 628

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727
                   Q       + +          I ++   + Q+  N L+NA  FT  G  I +
Sbjct: 629 FRSLYQTFQSRVKG-GVTLYCEIPEQDCVIYSEKNRLTQVITNFLTNACKFTFQGS-IRM 686

Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
                 +  +   V+DTG G+    L    + F +  +      +GTGLGL + + +++ 
Sbjct: 687 GYKEREDG-LYFYVKDTGKGIERKNLPHVFERFAKFDSFI----QGTGLGLSICQTILEN 741

Query: 788 NMGKFYIFSTPAKGTLIEIIFP 809
             GK  + S   KG+      P
Sbjct: 742 LHGKIGVESEEGKGSTFWFTIP 763


>gi|254504682|ref|ZP_05116833.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Labrenzia alexandrii DFL-11]
 gi|222440753|gb|EEE47432.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Labrenzia alexandrii DFL-11]
          Length = 580

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 75/296 (25%), Positives = 139/296 (46%), Gaps = 9/296 (3%)

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK-NKLSHAKKIAEKE 581
           +  E+  +   + E+LL      +    +     T+ D+    +E+   L  A   A K 
Sbjct: 12  RRFERERMARKEAERLLE-DKSSELYEINQKLISTLGDLEAQVEERTAALKTAMSDAVKA 70

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
           +  KS FLA +SHEIRTP+  +IG + ++ +       +     YA  I  S + +L I+
Sbjct: 71  NEAKSQFLANISHEIRTPMNGVIGMATLLLDTSL----SDNQRHYATTIRESSDALLTII 126

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILAD 700
           ND+LD+SK+E+G++ L  E   L + +   + ++   A  + + + +     +   ++ D
Sbjct: 127 NDILDLSKLEAGRLELSNEEFQLADVIDGVLEILAPAAISRSLDLVSFLPMELQTSVVGD 186

Query: 701 LRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKP 759
              ++QI LN+  NA+ FT  G   + +S   + + +V   + DTG+G+   +L      
Sbjct: 187 AGRLRQILLNLAGNALKFTDKGTVAVRVSEAKS-SGKVRFEIEDTGIGIPQDQLPTLFDK 245

Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
           F Q+  S   +  GTGLGL + + ++    G+  + S   +G+L     PL     
Sbjct: 246 FVQVDPSSSRQHGGTGLGLAITRQLISLMGGRIGVQSEEREGSLFWFELPLLKDDQ 301


>gi|110834488|ref|YP_693347.1| sensor/response regulator hybrid [Alcanivorax borkumensis SK2]
 gi|110647599|emb|CAL17075.1| sensor/response regulator hybrid [Alcanivorax borkumensis SK2]
          Length = 930

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 79/243 (32%), Positives = 132/243 (54%), Gaps = 8/243 (3%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  A+K A K S  KS+FLA +SHEIRTPL  IIGF++++           R  EY + 
Sbjct: 276 ELDMARKEALKASHIKSEFLANMSHEIRTPLNGIIGFTKLLHRSPLSA----RQEEYLST 331

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I +S   +L I+ND+LD SKIE+GK++L   P++L + + +  +L+   A E+ +   + 
Sbjct: 332 IHKSAESLLAIINDVLDFSKIEAGKLSLDHTPLNLHDLIEDVQTLLAPMAQERGLEQASI 391

Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILRVRDTG 745
             +++P  +L D   ++Q+  N+LSNAI FT  G  ++ +           + + V DTG
Sbjct: 392 IYSDVPVALLGDPLRIRQVLTNLLSNAIKFTDHGSVVVRAMLEEDRGAEAIIKITVTDTG 451

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
            G++    +   + F Q   S + +  GTGLGL ++K +V++  G+  I S   +G+   
Sbjct: 452 HGLSQENQKNLFRAFTQTDQSARRQEGGTGLGLAISKRLVESMGGEIGIESCEERGSTFW 511

Query: 806 IIF 808
              
Sbjct: 512 FTL 514


>gi|221066121|ref|ZP_03542226.1| PAS/PAC sensor signal transduction histidine kinase [Comamonas
           testosteroni KF-1]
 gi|220711144|gb|EED66512.1| PAS/PAC sensor signal transduction histidine kinase [Comamonas
           testosteroni KF-1]
          Length = 465

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 86/457 (18%), Positives = 177/457 (38%), Gaps = 45/457 (9%)

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
           LL A  ++ +  +    +       I          WN    L         A      +
Sbjct: 21  LLWAYLVAPDATVGQQTVAAMAGALIGGWIWWLVDSWNGARLLRWLRQSELGAVPNLAGI 80

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSIL---EATSDGIAIINREGIILSTNRAVSKLF 485
                       R + ++++    +L  IL   +A+ +G+ +++ +G I   N+  +K F
Sbjct: 81  WGEAGVRMRRWIRQSVQQVQQGDQRLNDILSALQASPNGVVLLDAQGRIEWCNQIAAKQF 140

Query: 486 GYPVEDILRKPFTVFLEQNTPSVM---NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
           G+  E  + +     +     S       +  +++      T  +             ++
Sbjct: 141 GFDAERDVLQSIGNLVRNPQFSAYFVAQDFTHDLVMQGRESTPSR------------PVK 188

Query: 543 IIIKKLPFSSCY-SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
           + ++   +      L   D++  +Q +              + + DF+A VSHEIRTPLT
Sbjct: 189 LSVQLYGYGEGRKLLLARDVTALEQAE--------------AMRRDFVANVSHEIRTPLT 234

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
            + GF E ++N    PL       Y   + +    +  +V DLL +S++E   +  + + 
Sbjct: 235 VLAGFVETLQN---LPLEEAERNRYLELMAQQAERMQHLVEDLLTLSRLEGSPLPGNNDW 291

Query: 662 VSLDEAVSEAISLVQLYANE------KRILIRTSFANNI---PRILADLRSVKQIALNIL 712
           VS+ + ++   +  +  +N       K  ++       +     +      +     N+L
Sbjct: 292 VSVAQLLTRCENEARGLSNALTRKQSKPHVLNFPDEQVLRQAGELAGASAELHSAFSNLL 351

Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           +NA+ +TP+GGQI +      +      V+D+G G+    + +  + F ++  S+     
Sbjct: 352 ANAMRYTPAGGQIDVRWQLLPDGSARFAVKDSGPGIDERHVSRLTERFYRVDRSRSRDTG 411

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GTGLGL + K ++  +  K  I S   KG+   + FP
Sbjct: 412 GTGLGLAIVKHVLQRHGAKLSIESELGKGSEFAVTFP 448



 Score = 38.5 bits (88), Expect = 4.4,   Method: Composition-based stats.
 Identities = 36/356 (10%), Positives = 78/356 (21%), Gaps = 26/356 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +DA G ++  ++   K  G  A + +   + ++             D             
Sbjct: 123 LDAQGRIEWCNQIAAKQFGFDAERDVLQSIGNLVRNPQFSAYFVAQDFTH--------DL 174

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           +     +    P+ L+              R   +           A+ +      SH  
Sbjct: 175 VMQGRESTPSRPVKLSVQLYGYGEG-----RKLLLARDVTALEQAEAMRRDFVANVSHEI 229

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
                  +   E       +        +N+   L    A +   L  +   L   E S 
Sbjct: 230 RTPLTVLAGFVETLQNLPLEEAE-----RNRYLELMAQQAERMQHLVEDLLTLSRLEGSP 284

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
           LP   D+ ++       +     L N            N P        GE         
Sbjct: 285 LPGNNDWVSVAQLLTRCENEARGLSNALTRKQSKPHVLNFPDEQVLRQAGELAGASAELH 344

Query: 329 CPIPFFVYSHGNLFYANPSFLLLT-----KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
                 + +      A     +               +   G+     +        +  
Sbjct: 345 SAFSNLLANAMRYTPAGGQIDVRWQLLPDGSARFAVKDSGPGIDERHVSRLTERFYRVDR 404

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
                +  T +  +   H +Q +      ++                 G      +
Sbjct: 405 SRSRDTGGTGLGLAIVKHVLQRHGAK---LSIESELGKGSEFAVTFPPGRVRAVTE 457


>gi|86360302|ref|YP_472190.1| two-component sensor histidine kinase/response regulator hybrid
           protein [Rhizobium etli CFN 42]
 gi|86284404|gb|ABC93463.1| probable two-component sensor histidine kinase/response regulator
           hybrid protein [Rhizobium etli CFN 42]
          Length = 645

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 89/517 (17%), Positives = 177/517 (34%), Gaps = 38/517 (7%)

Query: 318 GENLTPETVDKCPI--PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
            E      VD       + +   G +   N        YK  + +      S        
Sbjct: 13  EEGRFRLLVDAITDYAIYMLSPEGIVTSWNTGAQRFKGYKPSEILGE--HFSRFYVDEDR 70

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
           +     + +                   + +     A   +     +   E +    I  
Sbjct: 71  AAGIPERALATALEQGR---FEGEGWRQRKDGSRFWA-HVVIDPIRHPSGELVGFAKITR 126

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILR 494
           +  + R  +  +     Q   +++  SD  I +++  G + S N    ++ GY  ++I+ 
Sbjct: 127 DLTERRAAEHAIRQSEEQFRRLVQGVSDYAIYMLDPNGNVSSWNFGAERIKGYRPDEIIG 186

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554
           + F+ F      +      T +         E+      K+       +++  +      
Sbjct: 187 RHFSTFYTPEDRAAGLPE-TALRVARAEGRFEREGWRVRKDGTRFWASVVVDVIRGDDGE 245

Query: 555 SL----TMHDISEWKQEKNKLSHAKKIAEKES--SHKSDFLARVSHEIRTPLTAIIGFSE 608
            L       DI+E  + +  L  A++   +             ++H+    L A++G  E
Sbjct: 246 VLGFAKITRDITEKMETQRALEQAREELFQSQKMEAIGQLTGGIAHDFNNLLMAVLGSLE 305

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
           ++K +    L         +   +       +   +L  S+    +  L  EP+ +   V
Sbjct: 306 ILKKRMPQDLS---LTSLVDNAMQGAQRGAALTQRMLAFSR----RQELLMEPIDVSGLV 358

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
              + ++   +      I TSF   +P IL D   ++   LN++ NA    PSGG+I++ 
Sbjct: 359 RGMMDILS-RSLGPLTTIETSFPVRLPTILTDPNQLEMAILNLVVNARDAMPSGGRIVLR 417

Query: 729 TTHT----------SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
            +            +   V + V D G GM    LE+A+ PF          G+GTGLGL
Sbjct: 418 ASEESIAAGKGPLSAGRYVRIAVIDEGEGMDTKTLEQAVTPFFTTKG----VGKGTGLGL 473

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            + + +   + G+  + S P +GT  E+ FP+     
Sbjct: 474 SMVQGLATQSGGRLILKSRPGEGTTAELWFPVVAVEQ 510



 Score = 74.3 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 34/342 (9%), Positives = 96/342 (28%), Gaps = 22/342 (6%)

Query: 67  YLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH 126
            L  E  F       T    + +   G +   +    +  G    +++G           
Sbjct: 10  SLSEEGRFRLLVDAITDYAIYMLSPEGIVTSWNTGAQRFKGYKPSEILGEHFSRFYVDED 69

Query: 127 ID---PNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI 183
                P   +   L++   + G+      +G+  +  + +   PI   + E  GF    I
Sbjct: 70  RAAGIPERALATALEQGR-FEGEGWRQRKDGSRFWAHVVID--PIRHPSGELVGFAK--I 124

Query: 184 VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSS-VEKEKYDIFSQQSPPPHLR--MKNKV 240
                         ++ +++F  L +    ++  +     ++ S       ++    +++
Sbjct: 125 TRDLTERRAAEHAIRQSEEQFRRLVQGVSDYAIYMLDPNGNVSSWNFGAERIKGYRPDEI 184

Query: 241 SS--LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFH-TINLNQYTKKQYFGTLQNNSK 297
                + +Y  +D      +  L  +      E+E +    +  ++        ++ +  
Sbjct: 185 IGRHFSTFYTPEDRAAGLPETALRVARAEGRFEREGWRVRKDGTRFWASVVVDVIRGDDG 244

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP--------IPFFVYSHGNLFYANPSFL 349
           E   +       +             E + +               +   NL  A    L
Sbjct: 245 EVLGFAKITRDITEKMETQRALEQAREELFQSQKMEAIGQLTGGIAHDFNNLLMAVLGSL 304

Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR 391
            + K +   D+ +   +   +   +       + +   R   
Sbjct: 305 EILKKRMPQDLSLTSLVDNAMQGAQRGAALTQRMLAFSRRQE 346



 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/231 (8%), Positives = 49/231 (21%), Gaps = 5/231 (2%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + +D +G +   +    +  G    ++IG                    L   +     
Sbjct: 157 IYMLDPNGNVSSWNFGAERIKGYRPDEIIGRHFSTFYTPEDRAAGLPETALRVARAEGRF 216

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +   W +          +    I   + E  GF       + R   +     + L++   
Sbjct: 217 EREGWRVRKDGTRFWASVVVDVIRGDDGEVLGF-----AKITRDITEKMETQRALEQARE 271

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
            L + +K  +  +          +    +    ++             L           
Sbjct: 272 ELFQSQKMEAIGQLTGGIAHDFNNLLMAVLGSLEILKKRMPQDLSLTSLVDNAMQGAQRG 331

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
            +       F              G ++         L        S    
Sbjct: 332 AALTQRMLAFSRRQELLMEPIDVSGLVRGMMDILSRSLGPLTTIETSFPVR 382


>gi|15599141|ref|NP_252635.1| two-component sensor [Pseudomonas aeruginosa PAO1]
 gi|9950133|gb|AAG07333.1|AE004812_8 probable two-component sensor [Pseudomonas aeruginosa PAO1]
          Length = 1212

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 108/604 (17%), Positives = 228/604 (37%), Gaps = 26/604 (4%)

Query: 225 FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYT 284
              Q  P       ++  L    A    + ++ K   +     S            +   
Sbjct: 336 LHFQVTPRSGGFPEQIGVLARKEADLAIMSRSSKREEMLRFTRSFLSTSYVLVTRADDKG 395

Query: 285 KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY- 343
           + +  G+L                     Y           +D   +  +          
Sbjct: 396 RAEIPGSLDGKRIAIPAG-HVGMQQVRERYPQASMVEVGVALDAMNL-VYEGRADAAVVP 453

Query: 344 -ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT 402
                + ++  ++    I     +        +   +A    +L ++  +          
Sbjct: 454 LVTARYYIVRLFRERLAIADLVPIGAATAHFAVRRGDAELQSILDKALLSISPDDLSDIV 513

Query: 403 IQWNRENS----LAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN-------KRKMEIEV 451
            +W           + +I                        R         ++ +  ++
Sbjct: 514 NRWRSPPGMSGQTWVDYILVITEILAIAAALLLLCLGWVTYQRRQIRVRARVEQALSDQL 573

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
             + ++ +     + + +  G +LS NR+  +  G   E+++ +       +N  +    
Sbjct: 574 RFVEALTDCMPPPLYVRDVNGRMLSCNRSYLQSVGLSSEEVMNRTVLELPMENFETAPEF 633

Query: 512 YLTEILSLDLRQTLEKIT-LGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEK 568
           + + ++++   +T+E +  +     E+ +   I   +              DI+E +Q  
Sbjct: 634 HRSYLMAMREGRTIEAVYPVALGGRERWIDHWIQPFRDSSGTIRGVICGWLDITEHRQLI 693

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
           ++L  AK +A++ S  K+ FLA +SHEIRTP+ A+IG  E+   +      +        
Sbjct: 694 DELEEAKNLADEASRAKTTFLATMSHEIRTPMNAVIGILELALKRAETGRVD---RSSIE 750

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
               S   +L+++ D+LDI++IESG+++L  +  +L E V     + +  A +KR+ +  
Sbjct: 751 IAYASAKSLLELIGDILDIARIESGRLSLSPKRANLRELVESVARVFEGLARQKRLSLVL 810

Query: 689 SFANNI-PRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNE--EVILRVRDT 744
              ++I   +L D    KQI  N++SNAI FT  G  +I I          +V L V DT
Sbjct: 811 EIDSSINGDVLLDAMRFKQILSNLVSNAIKFTDEGSIRIRIDGRQVEPSLLQVNLCVEDT 870

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G++  + ++  +PF Q+  + Q   EGTGLGL +++++ +   G+  + S   +GT I
Sbjct: 871 GIGISLGDQQQLFRPFAQVNRNLQ-NTEGTGLGLVISRSLCEMMGGRLVMSSELGQGTRI 929

Query: 805 EIIF 808
           ++  
Sbjct: 930 DVEL 933



 Score = 47.7 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 64/243 (26%), Gaps = 11/243 (4%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D +G +   +    +++G  + +++   + ++               L           +
Sbjct: 591 DVNGRMLSCNRSYLQSVGLSSEEVMNRTVLELPMENFETAPEFHRSYLMAMREGRTIEAV 650

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFR-GFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           +P+        ID    P    +    G   G+  +  +R   D     K L  + S   
Sbjct: 651 YPVALGGRERWIDHWIQPFRDSSGTIRGVICGWLDITEHRQLIDELEEAKNLADEASRAK 710

Query: 209 EIKKGHSSVE--KEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
                  S E       +              +V   +   A+       E    +    
Sbjct: 711 TTFLATMSHEIRTPMNAVIGILELALKRAETGRVDRSSIEIAYASAKSLLELIGDILDIA 770

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
                +       L+   K+     L  +    FE L+ +   SL    D   N     +
Sbjct: 771 RIESGR-------LSLSPKRANLRELVESVARVFEGLARQKRLSLVLEIDSSING-DVLL 822

Query: 327 DKC 329
           D  
Sbjct: 823 DAM 825


>gi|28900955|ref|NP_800610.1| putative sensor histidine kinase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260366168|ref|ZP_05778628.1| putative lipoprotein [Vibrio parahaemolyticus K5030]
 gi|260879810|ref|ZP_05892165.1| putative sensor histidine kinase [Vibrio parahaemolyticus AN-5034]
 gi|260894484|ref|ZP_05902980.1| putative sensor histidine kinase [Vibrio parahaemolyticus Peru-466]
 gi|28809401|dbj|BAC62443.1| putative sensor histidine kinase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308086387|gb|EFO36082.1| putative sensor histidine kinase [Vibrio parahaemolyticus Peru-466]
 gi|308092066|gb|EFO41761.1| putative sensor histidine kinase [Vibrio parahaemolyticus AN-5034]
 gi|308114882|gb|EFO52422.1| putative lipoprotein [Vibrio parahaemolyticus K5030]
          Length = 785

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 75/277 (27%), Positives = 132/277 (47%), Gaps = 8/277 (2%)

Query: 537 KLLSLRIIIKKLPFSSCYSLTMH-DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
           +   L + +  +     +   +   +   KQ  ++L      AE+ +  KS FLA +SHE
Sbjct: 221 RFTWLFVFVAVMLLVGSFLYQLQYRMHNLKQLNSELEAETDKAERAAKAKSSFLAAMSHE 280

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           +RTP+  ++G S++I  +   P+      E+   I  SG  ++ I+ND+LD SK+E  K+
Sbjct: 281 LRTPMNGVLGISQLIAEETKEPVT----KEHIKVILDSGQHLMTILNDILDFSKVEENKL 336

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILADLRSVKQIALNILSN 714
            L   P  L++ ++   S +Q   +EK I +       N      D   ++QI  N+  N
Sbjct: 337 ELEKAPFHLEQVLTPVCSAIQPLIDEKSIDLIVENDVPNNTEFTGDCARLRQILFNLAGN 396

Query: 715 AIHFTPSGGQIIISTTH-TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
           A+ FT  G  ++I T   + ++ +++ V DTG+G+   +  +    F Q  +S   R  G
Sbjct: 397 AVKFTNEG-HVLIRTELNSEDKHLLIIVSDTGIGIAPDKQGRVFNSFEQADSSTTRRFGG 455

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           TGLGL + K + +   G   + S    GT   +  P+
Sbjct: 456 TGLGLAIVKKLTELMGGSITLKSVEGVGTQFIVTLPI 492


>gi|254236839|ref|ZP_04930162.1| hypothetical protein PACG_02859 [Pseudomonas aeruginosa C3719]
 gi|126168770|gb|EAZ54281.1| hypothetical protein PACG_02859 [Pseudomonas aeruginosa C3719]
          Length = 1212

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 108/604 (17%), Positives = 228/604 (37%), Gaps = 26/604 (4%)

Query: 225 FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYT 284
              Q  P       ++  L    A    + ++ K   +     S            +   
Sbjct: 336 LHFQVTPRSGGFPEQIGVLARKEADLAIMSRSSKREEMLRFTRSFLSTSYVLVTRADDKG 395

Query: 285 KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY- 343
           + +  G+L                     Y           +D   +  +          
Sbjct: 396 RAEIPGSLDGKRIAIPAG-HVGMQQVRERYPQASMVEVGVALDAMNL-VYEGRADAAVVP 453

Query: 344 -ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT 402
                + ++  ++    I     +        +   +A    +L ++  +          
Sbjct: 454 LVTARYYIVRLFRERLAIADLVPIGAATAHFAVRRGDAELQSILDKALLSISPDDLSDIV 513

Query: 403 IQWNRENS----LAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN-------KRKMEIEV 451
            +W           + +I                        R         ++ +  ++
Sbjct: 514 NRWRSPPGMSGQTWVDYILVITEILAIAAALLLLCLGWVTYQRRQIRVRARVEQALSDQL 573

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
             + ++ +     + + +  G +LS NR+  +  G   E+++ +       +N  +    
Sbjct: 574 RFVEALTDCMPPPLYVRDVNGRMLSCNRSYLQSVGLSSEEVMNRTVLELPMENFETAPEF 633

Query: 512 YLTEILSLDLRQTLEKIT-LGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEK 568
           + + ++++   +T+E +  +     E+ +   I   +              DI+E +Q  
Sbjct: 634 HRSYLMAMREGRTIEAVYPVALGGRERWIDHWIQPFRDSSGTIRGVICGWLDITEHRQLI 693

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
           ++L  AK +A++ S  K+ FLA +SHEIRTP+ A+IG  E+   +      +        
Sbjct: 694 DELEEAKNLADEASRAKTTFLATMSHEIRTPMNAVIGILELALKRAETGRVD---RSSIE 750

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
               S   +L+++ D+LDI++IESG+++L  +  +L E V     + +  A +KR+ +  
Sbjct: 751 IAYASAKSLLELIGDILDIARIESGRLSLSPKRANLRELVESVARVFEGLARQKRLSLVL 810

Query: 689 SFANNI-PRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNE--EVILRVRDT 744
              ++I   +L D    KQI  N++SNAI FT  G  +I I          +V L V DT
Sbjct: 811 EIDSSINGDVLLDAMRFKQILSNLVSNAIKFTDEGSIRIRIDGRQVEPSLLQVNLCVEDT 870

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G++  + ++  +PF Q+  + Q   EGTGLGL +++++ +   G+  + S   +GT I
Sbjct: 871 GIGISLGDQQQLFRPFAQVNRNLQ-NTEGTGLGLVISRSLCEMMGGRLVMSSELGQGTRI 929

Query: 805 EIIF 808
           ++  
Sbjct: 930 DVEL 933



 Score = 47.7 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 64/243 (26%), Gaps = 11/243 (4%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D +G +   +    +++G  + +++   + ++               L           +
Sbjct: 591 DVNGRMLSCNRSYLQSVGLSSEEVMNRTVLELPMENFETAPEFHRSYLMAMREGRTIEAV 650

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFR-GFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           +P+        ID    P    +    G   G+  +  +R   D     K L  + S   
Sbjct: 651 YPVALGGRERWIDHWIQPFRDSSGTIRGVICGWLDITEHRQLIDELEEAKNLADEASRAK 710

Query: 209 EIKKGHSSVE--KEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
                  S E       +              +V   +   A+       E    +    
Sbjct: 711 TTFLATMSHEIRTPMNAVIGILELALKRAETGRVDRSSIEIAYASAKSLLELIGDILDIA 770

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
                +       L+   K+     L  +    FE L+ +   SL    D   N     +
Sbjct: 771 RIESGR-------LSLSPKRANLRELVESVARVFEGLARQKRLSLVLEIDSSING-DVLL 822

Query: 327 DKC 329
           D  
Sbjct: 823 DAM 825


>gi|317487012|ref|ZP_07945820.1| hsp90-like protein [Bilophila wadsworthia 3_1_6]
 gi|316921694|gb|EFV42972.1| hsp90-like protein [Bilophila wadsworthia 3_1_6]
          Length = 585

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 97/558 (17%), Positives = 185/558 (33%), Gaps = 42/558 (7%)

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
             + +   E      +  +   +    L N   E  + +S              +     
Sbjct: 54  GAALISALEGALRTGMGYHWSDEVLSDLLNKVGEQPDIVSLVITNRNGTVLMAADTKLIG 113

Query: 325 TVDKCPIPFFVYSHGNLFYAN--------PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
           T    P              N        P F +  ++          G    +    L 
Sbjct: 114 TSFLSPEVLAELDPTRQVKWNATELPDGMPVFQVYKQFSVPQGERRRHGGGHRMMRRGL- 172

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           D ++   +    ++ T +               +     +           +        
Sbjct: 173 DGDSCGMLEASIAEGTSLVIFVEYDLTPLEEAQAADEKHMAVMFGILVFVGLVGCITLFL 232

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
               R +++ ++        IL     GI   + +  I S N A   + G        + 
Sbjct: 233 IQSYRRSRKLVQETTAFSSEILRTLPVGIISTDMDDRITSINPAAQDITGLTRTAATGRG 292

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL-GSTKEEKLLSLRIIIKKL----PFS 551
               L           +  +L     Q   +      T  E+ + L I    +      +
Sbjct: 293 LHDLLPG---------VWAVLEGRTAQDAAREQEAWCTVGERRVPLAISASHIVTEEGEA 343

Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
              +L M D+ E ++ +++L    ++    +       A ++HE+R PL+AI G +    
Sbjct: 344 IGTALIMRDLGEIRRLQSELRRRDRLVALGNMA-----AGIAHEVRNPLSAIKGLARFFM 398

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
                P G+      A+ + R    +  +V DLLD ++ +     L+   V L+E V  A
Sbjct: 399 E--ASPEGSDESR-MADIMTREVLRLDKVVGDLLDFARPD----VLNLTDVGLNELVERA 451

Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
             +V+   + ++I            +  D   + Q+ LN+  NA+   P GG++++    
Sbjct: 452 RDMVRSDMDARKIRFEAELPEPPLSVRLDRDRMTQVLLNLFLNAVQAMPDGGRLMVRARM 511

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
               E+ L V DTG G+    L     P+     S      GTGLGL +   +V+A+ G 
Sbjct: 512 E-GTELALDVADTGCGIAPERLADIFSPYFTTKAS------GTGLGLSIVHKIVEAHDGT 564

Query: 792 FYIFSTPAKGTLIEIIFP 809
             + STP +GT+ ++ FP
Sbjct: 565 IEVASTPGEGTVFKLRFP 582



 Score = 58.1 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 37/257 (14%), Positives = 64/257 (24%), Gaps = 19/257 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            D    +  I+       G       G  L D+   +             R+        
Sbjct: 264 TDMDDRITSINPAAQDITGLTRTAATGRGLHDLLPGVWAVLEGRTAQDAAREQE------ 317

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSG----FRGFGIVHVNRVDNDPRALGKRLDKKF 204
            W   G    VP+ ++A  I +   E  G     R  G +   + +   R     L    
Sbjct: 318 AWCTVGE-RRVPLAISASHIVTEEGEAIGTALIMRDLGEIRRLQSELRRRDRLVALGNMA 376

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
           + +    +   S  K     F + SP       +  S + +    +   L      LL  
Sbjct: 377 AGIAHEVRNPLSAIKGLARFFMEASPEG-----SDESRMADIMTREVLRLDKVVGDLLDF 431

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
               +    D   +N      +    +  +  K  FE        S+    D    +   
Sbjct: 432 ARPDVLNLTDVG-LNELVERARDMVRSDMDARKIRFEAELPEPPLSVRLDRDRMTQVLLN 490

Query: 325 TVDKCPIPFFVYSHGNL 341
                         G L
Sbjct: 491 LFLNAVQAM--PDGGRL 505


>gi|153836217|ref|ZP_01988884.1| sensory transduction protein kinase [Vibrio parahaemolyticus
           AQ3810]
 gi|149750492|gb|EDM61237.1| sensory transduction protein kinase [Vibrio parahaemolyticus
           AQ3810]
          Length = 1051

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 80/256 (31%), Positives = 130/256 (50%), Gaps = 12/256 (4%)

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + K     AK  A + S  KS FLA +SHEIRTPL  +IG SEV+ +            +
Sbjct: 376 KAKEDAERAKDDAIEASKAKSSFLANMSHEIRTPLNGVIGISEVLADTPLTAT----QRD 431

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           Y + I+ S  L+L ++ND+LD SKIESG + +      + E++ +  S+V   A EK I 
Sbjct: 432 YVDTIETSSQLLLSLINDVLDFSKIESGMLLISPHSTCVRESIYDIASIVSPKAKEKGIE 491

Query: 686 IRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILR 740
           +  S + N P  I+ D   ++Q+ +N +SNA+ FT  G  + +S T   + E    +   
Sbjct: 492 LTVSISPNTPYHIVIDDHRLRQVIMNFMSNAVKFTERGS-VELSITTLESNESEAIIEFS 550

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V+D+G+G+   + ++   PF Q  +S   +  GTGLGL ++  +V+   G   + S   +
Sbjct: 551 VQDSGIGIDEQQQKRIFAPFAQEDDSTTRQFGGTGLGLAISTQLVELMGGSIQLESEKGR 610

Query: 801 GTLIEIIF--PLYDTS 814
           G+        P+    
Sbjct: 611 GSRFYFQLTAPISQAH 626


>gi|242242764|ref|ZP_04797209.1| histidine kinase [Staphylococcus epidermidis W23144]
 gi|242233900|gb|EES36212.1| histidine kinase [Staphylococcus epidermidis W23144]
          Length = 586

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 67/354 (18%), Positives = 147/354 (41%), Gaps = 32/354 (9%)

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           ++L +  +G+  IN +  I+ +N+    +  +             ++  +   +   +  
Sbjct: 259 TLLNSMVEGVLGINNQREIILSNKMADDIMRH-------------IDDFSKESIEQQIEA 305

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575
                  + LE            +S  I   +    S   + + D++             
Sbjct: 306 TFESQENEYLELEINTRYY--VFISSYIDSIQTNGRSGIVMVIRDMT------------- 350

Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
                    K DF+A VSHE+RTP++ + G++E I +            +    +     
Sbjct: 351 -NEHNLDQMKKDFIANVSHELRTPISLLQGYTESIVDGIVTE--PDEIRDSLAIVLDESK 407

Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695
            +  +VN+LL+++++++  +++  E   +   + +  S  ++ + E  + +     N   
Sbjct: 408 RLNRLVNELLNVARMDAEGLSVEKELQPIQHLLDKMESKYRMQSEELGLTMTFDSNNEEQ 467

Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755
               D+  + Q+  N++ NA  +T +G  I IS     ++  IL + DTG G+    L++
Sbjct: 468 LWNYDMDRMDQVLTNLIDNATRYTQAGDSIKISIE-EDSDFNILTITDTGTGIAPEHLKQ 526

Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
               F ++  +++   +GTGLGL + K +++A+ G+  + S   KGT   I  P
Sbjct: 527 VFDRFYKVDAARKRGKQGTGLGLFICKMIIEAHGGRIDVESELGKGTSFIIRLP 580


>gi|313200497|ref|YP_004039155.1| histidine kinase [Methylovorus sp. MP688]
 gi|312439813|gb|ADQ83919.1| histidine kinase [Methylovorus sp. MP688]
          Length = 1136

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 74/266 (27%), Positives = 138/266 (51%), Gaps = 6/266 (2%)

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
            + +   +    L + +I   +Q   +L  A+++AE+ +  KS ++  +SHE+RTPL +I
Sbjct: 640 RVAQEESNRQTGLLLREIELHRQTDAELQQARQVAEQANQAKSRYITGISHELRTPLNSI 699

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +G+++++ N    P            I RSG  +L ++   LDI++IESGK+    +P+ 
Sbjct: 700 LGYAQLLDNDVSIPAA---RQPAIRVIRRSGEHLLSLIEGTLDIARIESGKLTFDIKPLR 756

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSG 722
           L E + + + + +L A  K +        ++P  + AD + + QI +NIL NA+ FT  G
Sbjct: 757 LPEFIQQVVDMFELQARNKGLTFSYQLTGDLPDMVRADQKRLSQILINILGNAVKFTRQG 816

Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
           G ++    + + E  ++ + DTG G+   EL++  +PF +   +      GTGLGL ++K
Sbjct: 817 G-VVFRLRY-ARELAVIEIEDTGPGILKEELDEIFEPFARGSAANNSTVAGTGLGLTISK 874

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIF 808
            +     G+  + S    GT+ +I  
Sbjct: 875 MLTQLMGGELSVRSVVGSGTVFQIRL 900


>gi|294678370|ref|YP_003578985.1| DMSO/TMAO-sensor hybrid histidine kinase [Rhodobacter capsulatus SB
           1003]
 gi|294477190|gb|ADE86578.1| DMSO/TMAO-sensor hybrid histidine kinase [Rhodobacter capsulatus SB
           1003]
          Length = 817

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 98/456 (21%), Positives = 184/456 (40%), Gaps = 34/456 (7%)

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
           ++    GL  +  A  LS+    +   L     T   A+     ++        +     
Sbjct: 100 EVARRHGLRGVPLAMFLSNFKGYRDSYLRLVQMTGFPAATETLYLR-------LLRGFFD 152

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
                      +  ++          +++  E  +  +I E+    + +I+ EG I + N
Sbjct: 153 RAEIGICTQWGRGVVDAGQEQLLAENQRVVTEKNKYLTIFESIQTPVFLIDAEGAIENMN 212

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
            A + L    V      P +V+                         E            
Sbjct: 213 HAAALLLSKDVV-----PGSVYYGAAARRSFQGLFGLDPRGIGPLLPEHEIDTIDGRR-- 265

Query: 539 LSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
             + +  +++   S       ++  D+++          A++ AE  +  K+DFLA +SH
Sbjct: 266 -WVSVSTQEMLDVSRKFLGTVISFTDVTD-------ERRAREEAEALARAKTDFLATMSH 317

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           EIRTP+ +I G  E+++     P    R   Y   IDRS  ++  IV+++LD S+IE+G 
Sbjct: 318 EIRTPIHSIGGIVELLRQDDLPP----RAAGYVEAIDRSARVLTSIVSEILDYSRIEAGG 373

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEK-RILIRTSFANNIPRILADLRSVKQIALNILS 713
           M L      L E  +E   +++     K  +++      ++P +  D   ++QI LN+  
Sbjct: 374 MMLERVDFPLGEVTAEVARVIEPLVARKPGLVLHVDAPADLPCVSGDPAKLRQILLNLAG 433

Query: 714 NAIHFTPSGGQII-ISTTHTSNEEV--ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           NA+ FT +G  +I +     S   V     VRDTG G+ +  LE+  +PF Q  +S + +
Sbjct: 434 NAVKFTEAGAVVIGLDLISRSPGRVLVRFSVRDTGPGIASERLEQIFRPFTQSDSSIERK 493

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
             GTGLGL +++ + +    +  + S P +G+   +
Sbjct: 494 HGGTGLGLAISRRLAELMGAELTVESHPGEGSCFRL 529


>gi|326318684|ref|YP_004236356.1| multi-sensor hybrid histidine kinase [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323375520|gb|ADX47789.1| multi-sensor hybrid histidine kinase [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 1160

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 106/671 (15%), Positives = 225/671 (33%), Gaps = 47/671 (7%)

Query: 179 RGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKN 238
           RG  +  +N        +   L          +    + E      +          ++ 
Sbjct: 44  RGEAVRRINAAVESIVQIQYVLSILKDAETGQRGYLLAGEPRYLGPYETAEASLTTELER 103

Query: 239 K--VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS 296
              +   +     + + L       ++    ++  +            +        +  
Sbjct: 104 LRGLVGDSPRQLRRFEQLAPLARQKMSELHETIQLRLSGQADAALAVVRTDRGRATMDAI 163

Query: 297 KESFEYL--SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKY 354
           +     +  + R          E                 +     +     +       
Sbjct: 164 RSLVREMIAAEREELEERRAMWEDSARFAAYFTWGSSLLLLVFILGVAAMTAADHRTKAR 223

Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI--AASARLHTIQWNRENSLA 412
           ++     + G    +    +L +        L R     +  A  +  H           
Sbjct: 224 EAWVRSGLMGLSDEIRGDLRLDELGPRVLAYLARRLGARVGAAYVSDGHGTFRRFGAYAL 283

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV-------MQLCSILEATSDGI 465
               P   A                    +    +E++         +L  +L A  +G+
Sbjct: 284 SGSGPERIATGEGLVGQVAQTLQPVHARHVPASHLEVQSGVGHSTPAEL-VVLPAVHNGV 342

Query: 466 AI-------------INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
                          I+ + +        S+     V   + +     L   T       
Sbjct: 343 VQAVIELGFFRPVQPIDMDML-----SRASEQLAIAVRSAIDRTQLEALLDETQRQAEEL 397

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK------- 565
             +   L +    E        +E    +     +L  S+     + + ++         
Sbjct: 398 QAQQEELRV-SNEELEQQSRVLQESQAQMEAQQTELEQSN---AQLEEQTQQLEYQKQQL 453

Query: 566 -QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
            + ++ LS   +  E+ S +KS+FLA +SHE+RTPL + +  ++++ + + G L + +  
Sbjct: 454 LRAQDALSDKARDLEQASQYKSEFLANMSHELRTPLNSSLILAKLLADNKGGNLTDEQVR 513

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
            YA  I  +GN +L ++ND+LD++KIE+G+  +  EPV++  AV   +  ++  A EK +
Sbjct: 514 -YAETIHGAGNDLLTLINDILDLAKIEAGQATVDIEPVNVARAVQSIVEPLRPLAREKNL 572

Query: 685 LIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
                    +P +   D + + QI  N+LSNAI FT  G ++ +      +  V   VRD
Sbjct: 573 AFSAVVEPGVPDVLRTDAQRLGQILKNLLSNAIKFTERG-EVALRVAAQPDGRVAFSVRD 631

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TG+G+ +++ +   + F Q   S   +  GTGLGL +++ +     G   + ST  +G++
Sbjct: 632 TGIGIPDHQQKLIFEAFRQADGSTHRKYGGTGLGLSISRDLAQLLGGSVSVQSTSGQGSV 691

Query: 804 IEIIFPLYDTS 814
             ++ PL    
Sbjct: 692 FTLVLPLQPPE 702


>gi|319780208|ref|YP_004139684.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
 gi|317166096|gb|ADV09634.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 851

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 105/634 (16%), Positives = 217/634 (34%), Gaps = 28/634 (4%)

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244
                                 L +     + +  E   +              +  +  
Sbjct: 227 RSQARLKIENQRLAADHDTMIGLLDALNMPAWLRGEDGGLKWVNRAYADAV---EAENAE 283

Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
                K + L  +    + ++  + P  E   +  +    +         +   +     
Sbjct: 284 AAVREKKEFLGGQARDAIAAQHRTHPVFEQSLSTVIEGDRRVFAVTDFAGSDGSAGLACD 343

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIA 363
                ++   ++       +T+D+      ++     L + N +F  L   ++   +  A
Sbjct: 344 TSAIEAVRGEYERTVRSHADTLDQLNTAVAIFDTDEKLRFFNQAFQKLWGLEA-GFLHSA 402

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
              + LLD  +     A +P      +    A  A      W          +      +
Sbjct: 403 PDNALLLDRLRSEGKIAEQPEWRRWKEGLLGAYRAVESQEHWWHLPDGKTIRVVANPQPK 462

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
                    +  +       +  + ++       L+  ++G+A+   +G +  +N A + 
Sbjct: 463 GGVTWVFENLTEKMDLESRYQTAVRVQGE----TLDNLAEGVAVFGPDGRLRLSNPAFAT 518

Query: 484 LFGYPVE----DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
           L+G   E     +         ++             ++    +  ++          +L
Sbjct: 519 LWGLSGEAAKPSVHVSTIRDLCDRQAADSPWPGFVAAVTGFDDERRDRHGQTELNNGNVL 578

Query: 540 SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
           S  +I      +    +T  D+++    +  L    +  +K    K++F+  VS+E+R+P
Sbjct: 579 SYAMIPLP---NGQVMMTFVDVTDSVHVERALKDKNEALQKSDQLKNEFVQHVSYELRSP 635

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           LT IIGF+E++     GPL   +  EY  ++  S  ++L IVND+LD++ +++G M L  
Sbjct: 636 LTNIIGFTELLSQPTTGPLT-QKQREYVEHVSSSSAVLLTIVNDILDLATVDAGIMQLDI 694

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719
             V +D  ++ A  LV     E  I +    A+       D   V+QI  N+LSNA ++ 
Sbjct: 695 SEVQVDRTIAAAAELVADRLEEHSIRLEVEAASAPKTFHGDEVRVRQILYNLLSNAANYA 754

Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG----QIPNSQQIRGEGTG 775
           P    I ++  H ++  V   V D G GM    L+   + F              G    
Sbjct: 755 PEASTIRLTCRHLADG-VEFSVHDDGPGMPPDVLDSVFRRFEPRANGGRRRGAGLGL--- 810

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
               + K+ V+ + G   I +   KGT +   FP
Sbjct: 811 ---SIVKSFVELHGGSVRIETGKDKGTTVICTFP 841


>gi|298385742|ref|ZP_06995300.1| two-component system histidine kinase [Bacteroides sp. 1_1_14]
 gi|298261883|gb|EFI04749.1| two-component system histidine kinase [Bacteroides sp. 1_1_14]
          Length = 499

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 99/503 (19%), Positives = 169/503 (33%), Gaps = 25/503 (4%)

Query: 323 PETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
            E +D  P    +++ +G +   N          S  +  +    + L       ++   
Sbjct: 11  DELLDILPDGVIIFNINGEVIQLNRQAQTELHVHSSANEMMPLSTNDLFKLLNNKEDILS 70

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
             +   R      +        +        +    F    +                  
Sbjct: 71  VILEKIRQGEQTYSLPEHTFMQEQVDYTQFPIR-GDFATIKEDGNLKKILFFFRNITVEL 129

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED---ILRKPFT 498
             +  +   + +              INR       NR    L G    +   +  + + 
Sbjct: 130 TQEYILNTALQRTR-----IYPWYYDINRS-EFTLDNRYFEHL-GISAGENNTLTMEEYV 182

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----Y 554
             +  +    M       LS                +            +   S      
Sbjct: 183 NMIHPDDRQAMADAFIVQLSGMETFDKSVPFRLHRGDGTWEWFEGQSTYIANISGHPYRL 242

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                 I E+K  +N L  A+K AE+    K  FLA +SHEIRTPL AI+GFS+VI +  
Sbjct: 243 VGICMSIQEYKDIENTLIEARKKAEESDRLKMAFLANMSHEIRTPLNAIVGFSDVIGST- 301

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
           +  L      ++   I  +   ++ +++D+LD+SKIES  +   F   SL   + +    
Sbjct: 302 YDELSEEERADFVRLISINSEHLVRLIDDVLDLSKIESNTIKFTFTDCSLQSLMMDIEKE 361

Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS- 733
            Q       I IR SF N    I  D   +KQ+  N ++NA  FT  G  I         
Sbjct: 362 -QAMKPISEIEIRASFPNEDVYINTDATRLKQVVCNFINNARKFTEKG-YIHFGYAVDPV 419

Query: 734 -NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
             + V + V DTG G+     ++    F ++   +    +GTGLGL + K +V+   G  
Sbjct: 420 NADSVNIFVEDTGSGIPQECQKEIFDRFYKVDTFK----QGTGLGLSICKTIVEHLQGDI 475

Query: 793 YIFSTPAKGTLIEIIFPLYDTSH 815
            + S   KG+   +  P    + 
Sbjct: 476 SVESEMGKGSRFIVTLPFERQTE 498


>gi|226314835|ref|YP_002774731.1| sporulation kinase [Brevibacillus brevis NBRC 100599]
 gi|226097785|dbj|BAH46227.1| sporulation kinase [Brevibacillus brevis NBRC 100599]
          Length = 622

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 104/514 (20%), Positives = 203/514 (39%), Gaps = 39/514 (7%)

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEI 362
                  +     + E      +D       +Y       YA+PS   L  +   + +  
Sbjct: 137 DISERKKIEEALRQTEAKYRLLIDHTQDIVTIYDLSMRRIYASPSIEQL-GFVPAE-VTS 194

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
              L            +  + +M  +             ++  N  N ++         N
Sbjct: 195 PNNLQLTHPEDIPMFRDKFQEIMATKQ-----PVHFETRSMDRNG-NEVSFETRGIPILN 248

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
              +      +     + + ++  +         I E T D I I ++ G IL  + + S
Sbjct: 249 AVGDVQNVMLVSRNITERKYSEAALFKSENTNKIISEYTDDLILITDKNGDILYLSPSHS 308

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
           ++      +  R+     +       +  +   +L+    +         TK  K + L 
Sbjct: 309 RV--IETSEHCRQLTFAEIHPEDRQTVIDHFHLLLATKEAKIC--EFRFQTKNNKWIVLE 364

Query: 543 I----IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
                I+ K      + +   DI+E +  +  L  A+K++        +  A ++HEIR 
Sbjct: 365 SKGAPILTKTGDCDGFIIVSRDITERRHNEELLRKAEKLSV-----IGELAAGIAHEIRN 419

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
           PLT++ GF + +      P  N    +YA+ +    + +  IV++LL ++K  S    + 
Sbjct: 420 PLTSLKGFIQFL-----YPSMNDNQ-QYADIMLSELDRINFIVSELLVLAKPHS----IQ 469

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718
            +P+ L   +   ++L++  AN K I  RT+FA + P I  +   +KQ+ +NI+ NAI  
Sbjct: 470 IKPLPLIPLLENVLTLLRSEANLKNIDFRTAFAYH-PIIAGEENQLKQVFINIIKNAIEA 528

Query: 719 TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
               G+++I+TT   N +V++ + DTG G++   + K   PF         +  GTGLGL
Sbjct: 529 IDGHGEVVIATTLKDNHQVLITLTDTGCGISEEMIHKLGAPFFTT------KENGTGLGL 582

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
            ++  ++  + G   I S   +GT++EI  P+  
Sbjct: 583 MISSKIMKDHNGSLEIKSREHEGTMVEITLPIVQ 616



 Score = 76.2 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 43/429 (10%), Positives = 120/429 (27%), Gaps = 33/429 (7%)

Query: 74  FVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI 133
           F F     ++      D    +  ++    +  G    ++    LC      +      +
Sbjct: 33  FHFTTDAISI-----SDLDNNIVLVNHAFEQYYGWSMEEIYASPLC-FIPEEYKSETKQL 86

Query: 134 GDLLKRQNTW--YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN 191
            D ++         +T     +GT   + + L+A PI     +  G     I        
Sbjct: 87  FDAVRSMGVLLTNYETIRQRKDGT--KMDVILSAAPIKDETGKIIGAS--CITRDISERK 142

Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR-MKNKVSSLTEYYAHK 250
                 ++ + K+  L +  +   ++                L  +  +V+S        
Sbjct: 143 KIEEALRQTEAKYRLLIDHTQDIVTIYDLSMRRIYASPSIEQLGFVPAEVTSPNNLQLTH 202

Query: 251 DDVLKTEKYPLLTSEESSLPEQEDFHTIN--LNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
            + +   +        +  P   +  +++   N+ + +     + N   +    +    +
Sbjct: 203 PEDIPMFRDKFQEIMATKQPVHFETRSMDRNGNEVSFETRGIPILNAVGDVQNVMLVSRN 262

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
            +   Y +     +  T          Y+   +   + +  +L    S   +        
Sbjct: 263 ITERKYSEAALFKSENT----NKIISEYTDDLILITDKNGDILYLSPSHSRVIETSEHCR 318

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
            L   ++   +    +  +        A       Q      + +         +  +  
Sbjct: 319 QLTFAEIHPEDRQTVIDHFHLLLATKEAKICEFRFQTKNNKWIVLESKGAPILTKTGDCD 378

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA------IINREGIILST----- 477
               +  +  + R N+ ++  +  +L  I E  + GIA      + + +G I        
Sbjct: 379 GFIIVSRDITERRHNE-ELLRKAEKLSVIGE-LAAGIAHEIRNPLTSLKGFIQFLYPSMN 436

Query: 478 -NRAVSKLF 485
            N+  + + 
Sbjct: 437 DNQQYADIM 445



 Score = 75.4 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 51/130 (39%), Gaps = 6/130 (4%)

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
           L +    T+D I+I + +  I+  N A  + +G+ +E+I   P   F+ +   S      
Sbjct: 29  LKAFFHFTTDAISISDLDNNIVLVNHAFEQYYGWSMEEIYASPL-CFIPEEYKSETKQLF 87

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKN 569
             + S+ +  T    T+   K+   + + +    +   +   +       DISE K+ + 
Sbjct: 88  DAVRSMGVLLT-NYETIRQRKDGTKMDVILSAAPIKDETGKIIGASCITRDISERKKIEE 146

Query: 570 KLSHAKKIAE 579
            L   +    
Sbjct: 147 ALRQTEAKYR 156


>gi|323694410|ref|ZP_08108581.1| hypothetical protein HMPREF9475_03445 [Clostridium symbiosum
           WAL-14673]
 gi|323501491|gb|EGB17382.1| hypothetical protein HMPREF9475_03445 [Clostridium symbiosum
           WAL-14673]
          Length = 801

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 101/478 (21%), Positives = 196/478 (41%), Gaps = 39/478 (8%)

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
              D     D+ A++ +     +R  +  SA +     + E       I     ++   +
Sbjct: 175 HPHDRQVFYDSFALENIRNRARERQQM-ISAEVRRKDRSGEYRYC-ELIGIFYKDREGIS 232

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQL-CSILEA---TSDGIAIIN--REGIILSTNRAV 481
                   +  +    + +      +   ++ E+     +G    +  R+     +    
Sbjct: 233 EKMMLTYRDTDELAKARIRERQANRRFVRAVNESYDEIYEGELYTDYLRQWKGEKSTPYF 292

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL------TEILSLDLRQTLEKITLGSTKE 535
              F     + ++      +      V    L       +  +     T+    L  +  
Sbjct: 293 R--FSPSFSEQIKWAADTIVHPEEKEVFLSRLSPDRLKEDFENGKSEVTISYRRLTPSGS 350

Query: 536 EKLLSLRIIIKKLP-FSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLA 590
            +  SL + + ++        L + DI + K+E+     +L +A  +AEK +  K+DFL+
Sbjct: 351 YRWHSLYVRLSEMTIDCIRVMLYLKDIDDVKKEEERKQRELQNALAMAEKANEAKTDFLS 410

Query: 591 RVSHEIRTPLTAIIGFSEV----IKNQRFGPLGNP---------RYIEYANYIDRSGNLV 637
           R+SH+IRTP+  I+G + V    ++++  G              + +     I+ S   +
Sbjct: 411 RMSHDIRTPMNVIVGMASVARFVLQSEVKGTANLQCDEKTGNYAKLLNCLEKIEMSSAFL 470

Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697
           L ++ND+LD+SKIESGKM +    ++L +A+     +++  A E+R     S A  +   
Sbjct: 471 LSLINDILDMSKIESGKMKIANREMNLKDAIRNIKVMIEAQAEERRQTFLVSVAPEVGEF 530

Query: 698 L-ADLRSVKQIALNILSNAIHFTPSGGQII--ISTTHTSNEE--VILRVRDTGVGMTNYE 752
              D   + QI LN+L NA+ +TP  G+I   ++       E  +   + DTG+GM+   
Sbjct: 531 YYCDSLRLNQILLNLLGNALKYTPEQGEIRLCVTAGKVEAGEQLIWFIISDTGIGMSEEF 590

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           + +   PF Q         EGTGLGL +++ +V+   G     S P+KGT+  +  P+
Sbjct: 591 MARMFDPFEQQDFGGSRIFEGTGLGLSISRKLVELLNGTISAESEPSKGTVFTVKIPM 648


>gi|298530225|ref|ZP_07017627.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509599|gb|EFI33503.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 850

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 83/405 (20%), Positives = 167/405 (41%), Gaps = 23/405 (5%)

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNR 479
            +                  +  +++++         +EAT D I   + R G     + 
Sbjct: 304 ESVARNMGYGVWFLRHRAKRKQVEKELQKTNEIFTLAMEATQDAIWDWDIRSGT-TYFSP 362

Query: 480 AVSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
               + GY   ++ +    F   +       +   +   L      ++E   +    E  
Sbjct: 363 RWYTMLGYEPYELPQNYDSFLAVIHPADKDEVKKQMDGFLRQSENFSIEYRAVSKNGETL 422

Query: 538 LLSLRIIIKKLPFSSC---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
            +  R  + +          + T  D++E K  + +LS AKK AE  +  K  FL  ++H
Sbjct: 423 WILTRGKVVQSDEQGRPLRMAGTNVDMTERKLMEQELSQAKKSAETANRAKDRFLENMNH 482

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           E+RTPL  I+   + + +    P       EY      S + +L  +N +L++S ++   
Sbjct: 483 ELRTPLNGIMSVLQTLADSELKPAE----KEYVEMALNSSSQLLASLNKILELSSLQDDI 538

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILS 713
             +H +P  L E +S+ +S  Q  A  K+I +      ++P  +++D+  ++QI  N++ 
Sbjct: 539 QQVHPQPFVLHEEMSKLVSFFQPQARNKQIGLELDIQEDVPSWLVSDVGMLRQIVWNLVD 598

Query: 714 NAIHFTPSGGQIIISTTHTSNEE---------VILRVRDTGVGMTNYELEKAMKPFGQIP 764
           NA+ FT  G ++++  +  S+           ++  V DTG G+ +   +   +PF    
Sbjct: 599 NAVKFTHEG-KVVLRISKQSDSRQDSEATTVPLLFEVEDTGGGIPHEMQKDIFEPFVIGE 657

Query: 765 NSQQ-IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           +  Q  R +GTG+GL + + +V +  G+  + S    G+    I 
Sbjct: 658 HDIQFKRYQGTGIGLSVCRQLVRSLGGETGVESRKGLGSTFYFIL 702



 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/148 (6%), Positives = 43/148 (29%), Gaps = 5/148 (3%)

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIA 363
                 +     +   +    ++      + +       Y +P +  +  Y+  +  +  
Sbjct: 320 RAKRKQVEKELQKTNEIFTLAMEATQDAIWDWDIRSGTTYFSPRWYTMLGYEPYELPQNY 379

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
                ++      +        L +S+      S     +  N E    +T     ++++
Sbjct: 380 DSFLAVIHPADKDEVKKQMDGFLRQSE----NFSIEYRAVSKNGETLWILTRGKVVQSDE 435

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEV 451
               +   G   +  + ++ ++++    
Sbjct: 436 QGRPLRMAGTNVDMTERKLMEQELSQAK 463


>gi|325845381|ref|ZP_08168680.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Turicibacter sp. HGF1]
 gi|325488596|gb|EGC91006.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Turicibacter sp. HGF1]
          Length = 444

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 84/388 (21%), Positives = 158/388 (40%), Gaps = 33/388 (8%)

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVM-QLCSIL-EATSDGIAIINREGIILSTNRAVSK 483
           E     GI+   +   I +++       Q+ SI+  +  D + I+N  G +   N    K
Sbjct: 82  EQQEVLGIKYNKLMRFIQQQEYRNRRNMQIISIITNSIEDPMVILNISGELEYANNRFKK 141

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
                   +    F    +     V+   L  I     ++TLE        ++K      
Sbjct: 142 WVDLSA--LKTVSFNEVKQPELRKVLEDAL--ICETTRKKTLEI-------DQKFYISTA 190

Query: 544 IIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
                         +  HDI++ ++ +             +  K +F   VSHE++TP++
Sbjct: 191 NPIYNEHDDFNGSVIIFHDITDLQKYQ-------------NLQK-EFFGNVSHELKTPIS 236

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           AI G +E++ N            E+   I    N +  +V DLL I++ E  ++ +  E 
Sbjct: 237 AIKGCTEILLNG--AKNDPAVLDEFLTMISDENNRMEQLVKDLLLINRYEFDQIKMKTEV 294

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
             L+E +++ I      A  K   I+   A    +I  D   +K   LN+L+NAIH++  
Sbjct: 295 FCLNELLTDCIVQPLNVAKLKHQKIKLE-APEQYQIEGDYIQLKHCFLNLLTNAIHYSGE 353

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
              I +       E   ++V D G+G+ + +L    + F ++  ++     GTGLGL + 
Sbjct: 354 NTTITVKAKAV-GEYYQIQVIDQGIGIPSADLPHIFERFYRVDRARSRHTGGTGLGLSIV 412

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +++++A+ G+  + S    GT   +  P
Sbjct: 413 QSIIEAHKGRIMVNSELNVGTTFTVSLP 440


>gi|323168623|gb|EFZ54303.1| signal transduction histidine-protein kinase atoS [Shigella sonnei
           53G]
          Length = 597

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 82/368 (22%), Positives = 169/368 (45%), Gaps = 28/368 (7%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            + +         I+E  +DG+  I+R+G + + N A   + GY   +++ +P+++    
Sbjct: 254 AQALRETRTLNDLIIENAADGVIAIDRQGDVTTMNPAAEVITGYQRHELVGQPYSMLF-- 311

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMH 559
              +     + + L                ++ + + L +   ++  +        +   
Sbjct: 312 -DNTQFYSPVLDTLEHGTEHV-ALEISFPGRD-RTIELSVTTSRIHNTHGEMIGALVIFS 368

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           D++  K+ + +++ A+++A        + +A V+HE+R PLTAI G+ ++++ Q   P+ 
Sbjct: 369 DLTARKETQRRMAQAERLAT-----LGELMAGVAHEVRNPLTAIRGYVQILRQQTSDPI- 422

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
              + EY + + +  + +  ++  LL+ S+    +    ++ VSL+  V E + LVQ   
Sbjct: 423 ---HQEYLSVVLKEIDSINKVIQQLLEFSRPRHSQ----WQQVSLNALVEETLVLVQTAG 475

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
            + R+   +   N +  I AD   +KQ+ LNIL NA+    + G+I I T   S+ +  +
Sbjct: 476 VQARVDFISELDNELSPINADRELLKQVLLNILINAVQAISARGKIRIQTWQYSDSQQAI 535

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            + D G G+     +K   PF     S      GTGLGL L++ +++A+ G   + S P 
Sbjct: 536 SIEDNGCGIDLSLQKKIFDPFFTTKAS------GTGLGLALSQRIINAHQGDIRVASLPG 589

Query: 800 KGTLIEII 807
            G    +I
Sbjct: 590 YGATFTLI 597



 Score = 40.4 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/117 (10%), Positives = 37/117 (31%), Gaps = 6/117 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G +  ++       G    +++G     +    +    + + D L+          
Sbjct: 278 IDRQGDVTTMNPAAEVITGYQRHELVGQPYSMLF--DNTQFYSPVLDTLEHGTEHVALEI 335

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
            +P     + + +  +   I++ + E  G     I        + +    + ++  +
Sbjct: 336 SFPGRDRTIELSVTTS--RIHNTHGEMIGA--LVIFSDLTARKETQRRMAQAERLAT 388


>gi|320353794|ref|YP_004195133.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
           2032]
 gi|320122296|gb|ADW17842.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
           2032]
          Length = 778

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 101/662 (15%), Positives = 196/662 (29%), Gaps = 56/662 (8%)

Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS 242
           I+ +     D   + + L               +      +           ++      
Sbjct: 7   ILMIEDEAADFLLIKRHLRTGGLETDLHWVQEEAGLHRALEHGGWDVVLSDYKVPG--LD 64

Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302
             +  A   D L      L++         E F +   +   K + F  +    +   E 
Sbjct: 65  FAQSLAKIKDRLPDVPVILISGSIGEETAVELFKSGLADFVLKDRLFRLIPAIERCLNEA 124

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIE 361
              R   +  A     E L    ++      FV    G     N +        +    E
Sbjct: 125 GEKRKRRTAEARLVRNEQLMRSVLEGTADAVFVKDGEGKYLLFNAAAARFAGVMA----E 180

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
              G    +  P  +    I+   +  +          +  +                  
Sbjct: 181 QVIGHDDTVVFPPATAQKIIEQDRMIMASGRVNIFEDEVLHV---GGEIRCYLTTKGPTF 237

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC-------SILEATSDGIAIINREGII 474
               +     GI  +  D    +  ++ +  +         ++L+   D I  +  +  I
Sbjct: 238 ADDGQVNGLFGIAHDITDRIRAEVLLKNQEEEYRRLSQEYKTLLDNVPDVIVHLTNDYRI 297

Query: 475 LSTNRAVSKLFGY--PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
           L  NRA  ++F           +              +  +    S +     E   L  
Sbjct: 298 LWVNRAARQMFKLAEDSRSYQGRHCHEVFWSRPEQCTDCPIVRCASTECN---EIGFLSP 354

Query: 533 TKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
               +   +R I  +              DI+  ++ + +   A+K+             
Sbjct: 355 AHNGQEFEIRAIPMRNQAGEIGSIIEIARDITAHRKLEEQFRQAQKM-----ESIGTLAG 409

Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650
            ++H+    L+AI+G+ ++          +    +    +  +G     +  DLL  S+ 
Sbjct: 410 GIAHDFNNILSAILGYGDLALEDM---AEDHPARKSVQTMIEAGMRASHLTKDLLLFSR- 465

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710
              K     E V +++ +      ++     + IL +T  A     I AD   + Q+ +N
Sbjct: 466 ---KQVSQKEAVDINQIIGRIEKFIR-RIIGEDILCQTHLAKESLVIHADSHQMDQVLMN 521

Query: 711 ILSNAIHFTPSGGQIIISTTHT--------------SNEEVILRVRDTGVGMTNYELEKA 756
             +NA    P GG   I+T                       + V DTG GM    + K 
Sbjct: 522 FATNARDAMPGGGVFSITTERIRIDQDFIDLHGFGIPGPYARITVADTGKGMNPQTVAKI 581

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
             PF          G+GTGLGL +   ++  + G   + STP K T++ +  PL   + P
Sbjct: 582 FDPFFTTK----EMGKGTGLGLAVVYGIIKQHQGHIEVTSTPGKCTVLTVYLPLL-AADP 636

Query: 817 HD 818
           HD
Sbjct: 637 HD 638



 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/154 (12%), Positives = 41/154 (26%), Gaps = 12/154 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWY 144
            +  D  G     +    +  G  A ++IG     V               ++       
Sbjct: 155 VFVKDGEGKYLLFNAAAARFAGVMAEQVIGHDDTVVFPPATAQKIIEQDRMIMASGRVNI 214

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG------- 197
            +  +  + G      +     P ++ + + +G   FGI H          L        
Sbjct: 215 FEDEVLHVGGEI-RCYLTTKG-PTFADDGQVNGL--FGIAHDITDRIRAEVLLKNQEEEY 270

Query: 198 KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231
           +RL +++  L +            Y I       
Sbjct: 271 RRLSQEYKTLLDNVPDVIVHLTNDYRILWVNRAA 304


>gi|218128651|ref|ZP_03457455.1| hypothetical protein BACEGG_00222 [Bacteroides eggerthii DSM 20697]
 gi|217989106|gb|EEC55421.1| hypothetical protein BACEGG_00222 [Bacteroides eggerthii DSM 20697]
          Length = 527

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 94/535 (17%), Positives = 182/535 (34%), Gaps = 36/535 (6%)

Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE-TVDKCPIPFFVYS---HGNLFYANPS 347
           L+  + +  + LS           +   N   +  +DK     F+         +  N +
Sbjct: 9   LERENVQLKKELSVLKRKMELLESNRSLNSFSQHLIDKMQAIIFIKDVTNGFRYYRVNDA 68

Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
           F  +      + I        L    +           +       +             
Sbjct: 69  FCSIQHLSRQEVIGKTDY--DLFSLEEAEKYRRDDEATVSMRGDFTLREMVHFQ-----G 121

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME-------IEVMQLCSILEA 460
           E  + +              +    +  +  +    +R ME            + +I   
Sbjct: 122 EEKIILQTTKSYVETSEGNQLLVC-VSYDITEHIQKERMMESLMKDEQEAHQMMKAIFHK 180

Query: 461 TSDGIAIIN--REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN-HYLTEIL 517
               I I +   +      N+   ++   P E ++ K       +          +    
Sbjct: 181 LPSAILIKDIEDDYRFYIINQKFEQMCNMPKELLIGKTDYDIFPKEEADKYRQDDVAATS 240

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAK 575
             +    L    + S        L+ I     F          +D++   Q   +L  A 
Sbjct: 241 CEESDPMLIHEIVTSPDRGTHTHLQTIKFSFTFKRKKLLVCVGNDVTLQYQMMEQLRDAL 300

Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
             AE+  + K+ F+A +SHEIRTPL +IIGFS+++         +    EY   I  + N
Sbjct: 301 SKAEQADTLKAQFIANMSHEIRTPLNSIIGFSQLMAEAENQTDRD----EYNRIISLNNN 356

Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695
           L+L++  D+L++S ++S  M+   +         E   L++   +   +           
Sbjct: 357 LLLNLFEDVLNLSMLDSDNMSFKNDEFDFSAMFDELAVLMREKVSNPEVEFICENPLQTL 416

Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-TSNEEVILRVRDTGVGMTNYELE 754
            +  D   + Q+  N+++NA  FT  G    I   +   N+ V + V DTG+G+    L 
Sbjct: 417 MVKTDRERLTQVIGNLITNAAKFTGQG---YIKMGYARKNDGVQIYVEDTGLGIEEKNLV 473

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +    F        +  +GTGLGLP+ K++V+   G+ ++ S   KG+   +  P
Sbjct: 474 EVFDRF----KKLNVFIQGTGLGLPICKSIVNQMGGEIWVESEYGKGSTFYVWLP 524


>gi|167772720|ref|ZP_02444773.1| hypothetical protein ANACOL_04102 [Anaerotruncus colihominis DSM
           17241]
 gi|167665198|gb|EDS09328.1| hypothetical protein ANACOL_04102 [Anaerotruncus colihominis DSM
           17241]
          Length = 1108

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 103/474 (21%), Positives = 182/474 (38%), Gaps = 37/474 (7%)

Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
               +      L TL+   K SD        +  +D        R    + + +  + +T
Sbjct: 366 DDRGEFIRQLDLPTLISHLKQSDQECRLYCRILSNDGAFRWKRIRFTYYEGD-QTHILLT 424

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII 474
               ++  +                     R +  +V +   I     +   I + +GI 
Sbjct: 425 IQDVQEVREAKNRELVRNRIF-----ATAFRDLYDQVFEADLITNEIHE--IICDEDGI- 476

Query: 475 LSTNRAVSKLFG-YPVEDILRKPFTVFLEQNTPSVMNHYLT-EILSLDLRQTLEKITLGS 532
                   ++ G   + +++   +   +  +        +  + +   L  +        
Sbjct: 477 -------QRIPGGQTLREVIDYRWEHLIHPDFRRQYMQEMDMDTIPERLASSPSIYFEVR 529

Query: 533 TK----EEKLLSLRIIIKKLP---FSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKE 581
            K     ++     I I+ L     S    L M DI + ++E       L  A  +A   
Sbjct: 530 RKTSFTSDEYHWYSIQIQFLSKSYDSYKIMLYMRDIDQTRREDERNKRALQDALVLARDA 589

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
           +  KSDF++R+SH+IRTP+ AIIG + +            +  +    I  S   +L ++
Sbjct: 590 NRAKSDFISRMSHDIRTPMNAIIGMTAIAAANLG---NEAKISDCLQKIGVSAKFLLSLI 646

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILAD 700
           ND+LD+SKIESGK+ +     +    +    S+    A +K +        N P     D
Sbjct: 647 NDILDMSKIESGKVVIAQCEFNFHRMIQGISSVFGQQAAQKHLAFNVYLEENFPLTCTGD 706

Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKA 756
              + QI +N+LSNAI FTP GG++ +       +E    V   V DTGVG++    ++ 
Sbjct: 707 ELRINQILMNLLSNAIKFTPEGGRVSLRIERKKAKEHITLVRFEVADTGVGISPEFQKRI 766

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             PF Q         EGTGLG+ + + +V    G+  + S P KG+   +  PL
Sbjct: 767 FDPFEQESAGSGRVFEGTGLGMTITQNLVALMDGRISLESEPGKGSRFIVELPL 820



 Score = 46.2 bits (108), Expect = 0.024,   Method: Composition-based stats.
 Identities = 23/213 (10%), Positives = 62/213 (29%), Gaps = 32/213 (15%)

Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM------EIEVMQL 454
           H    +               N    ++ +  +       +  + ++      E E ++ 
Sbjct: 124 HRQLGDDGEYHWTVTRVVRVENPMSSDVLEITLSRNIDHEKQLEERLKVQQEMERERIRY 183

Query: 455 CSILEATSDGIAIINR--------EGII---LSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            + +E+T D +   +         EG+    +   +   +        + R   T F+  
Sbjct: 184 QTAVESTDDIMFEYDVSSDFFTAFEGVFQDGVRCTQRFEQ-----PGYLSRMELTGFIHP 238

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMH 559
           +    M   L        R   +      T   +     +I   + + +         + 
Sbjct: 239 DYIERMRDKLNG------RTLEDIEIRMLTPYTQEYHWFLIRGNMLYENNRPVLMIGMLR 292

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
           DI+  KQ + +    ++I     +   + +A +
Sbjct: 293 DITHIKQLELERESLERIYHFTVNQDYNLVATI 325


>gi|52842360|ref|YP_096159.1| response regulator TutC [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
 gi|19880987|gb|AAM00615.1| response regulator TutC-like protein [Legionella pneumophila]
 gi|52629471|gb|AAU28212.1| response regulator TutC [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
          Length = 816

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 85/409 (20%), Positives = 157/409 (38%), Gaps = 56/409 (13%)

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV----- 508
             SI ++  D   +++R+  I+  + A  +      + IL K        N         
Sbjct: 12  FKSIFDSLPDLYLLLDRDFNIVGVSDAYLQATMVSRKQILGKNVFDAFPDNPNDPKATGA 71

Query: 509 --MNHYLTEILSLDLRQTLEK----ITLGSTKEEKLLSLRIII------KKLPFSSCYSL 556
             +   L  +L      T+      I   + +                            
Sbjct: 72  KNLYASLLRVLKNKSADTMAIQKYDIQRPADRGGGFEERYWSPINTPVLGADQEVEYIIH 131

Query: 557 TMHDISEWK---------------------QEKNKLSHAKKIAEKESSH----------- 584
            + D++E+                      + + ++    +  ++ +             
Sbjct: 132 RVEDVTEFVHLKKTGSAQLKLMEELRTKAGEMEIEIYQRAQEIQEANKQLEEANKNLARL 191

Query: 585 ---KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
              K+ F A VSHE+RTPL  I+   E++  ++  P            I  +  ++L  V
Sbjct: 192 DQIKTQFFANVSHELRTPLMLILDPLEMLLAEKKLPSF---VQNTLRRIQNNAQILLKHV 248

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701
           NDLL+ISK+++GKM LH+  + L + + + I+L +    E++++      + + +   D 
Sbjct: 249 NDLLNISKLDAGKMILHYANIDLVKLIQQTIALFEAQIPERKLVFSMDLPDEL-QAQIDP 307

Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761
             ++ + +NILSNAI FTP   ++ I     + E   L++ D G G+ +   E   + F 
Sbjct: 308 DKIQHVLINILSNAIKFTPQNAKVRIRLVQINPETCRLQIEDNGPGIPSDLCETIFERFF 367

Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           QI  S      GTGLGL +AK  V+ + G     +    G +  I  PL
Sbjct: 368 QIEESTTRTVGGTGLGLSIAKDFVELHGGSILAGNARNGGAIFTIELPL 416



 Score =  157 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 96/232 (41%), Gaps = 12/232 (5%)

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
           +K       F+   SH+++ PL A+      I  +  G + + +  +Y   + +  + + 
Sbjct: 587 KKAEDELDQFVYHASHDLKAPLPAMEHLISWI-EEDLGEMLSEQSKKYLLLLRQRASRMS 645

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
            +++ LL  +  +SG +      +  D  +++ I  +          +     + +P + 
Sbjct: 646 KLLDGLLKYA--QSGYVFDKVRTIHTDRLITDIIKKLNP-----PQTVTFQLEDTLPVLN 698

Query: 699 ADLRSVKQIALNILSNAIHFTP-SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757
                ++++   +L N+I       G III T    +      V D G G+     ++  
Sbjct: 699 TCELPLREVFTALLDNSIRHHHRKDGHIIIGTK-EKDRFYEFFVADDGPGIEKKYQDRIF 757

Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           + F  +    ++    +G+GL +AK +V+   GK  + S   KG++   ++P
Sbjct: 758 QLFQTLQPRDKLET--SGVGLSIAKKIVEFQGGKISVESEKNKGSVFRFLWP 807


>gi|317139763|ref|XP_001817748.2| sensor histidine kinase/response regulator [Aspergillus oryzae RIB40]
          Length = 2326

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 74/250 (29%), Positives = 126/250 (50%), Gaps = 10/250 (4%)

Query: 565  KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
            K  + +  H  K+ E  +  KS FLA +SH++RTP+  +IG SE++K  +     +    
Sbjct: 1857 KVAEAEAKHNVKLKEDAAKAKSIFLANISHDLRTPMNGVIGLSELLKATKL----DKEQD 1912

Query: 625  EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
            EY   I    + +L ++ND+LD SK+E+GKM +   P+++ E +SE +  ++    ++ +
Sbjct: 1913 EYVESIRVCADTLLTLINDILDFSKLEAGKMKISTVPLNIKETISEVVRALRYTHRDRGL 1972

Query: 685  LIRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL-- 739
                      P   +L D   + QI +N+LSN+  FTP G   +    T      + L  
Sbjct: 1973 ETIEDLEKVPPDLVVLGDPVRLHQIFMNLLSNSYKFTPKGSVTVRARVTREGKGRIRLEC 2032

Query: 740  RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA-NMGKFYIFSTP 798
             V DTG+G+   +  +  +PF Q  +S      G+GLGL + KA+++    G  ++ STP
Sbjct: 2033 SVSDTGIGIPEEQKSRLFRPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGAIWLDSTP 2092

Query: 799  AKGTLIEIIF 808
              GT +    
Sbjct: 2093 GVGTTVTFHL 2102


>gi|107103463|ref|ZP_01367381.1| hypothetical protein PaerPA_01004533 [Pseudomonas aeruginosa PACS2]
          Length = 1212

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 108/604 (17%), Positives = 228/604 (37%), Gaps = 26/604 (4%)

Query: 225 FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYT 284
              Q  P       ++  L    A    + ++ K   +     S            +   
Sbjct: 336 LHFQVTPRSGGFPEQIGVLARKEADLAIMSRSSKREEMLRFTRSFLSTSYVLVTRADDKG 395

Query: 285 KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY- 343
           + +  G+L                     Y           +D   +  +          
Sbjct: 396 RAESPGSLDGKRIAIPAG-HVGMQQVRERYPQASMVEVGVALDAMNL-VYEGRADAAVVP 453

Query: 344 -ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT 402
                + ++  ++    I     +        +   +A    +L ++  +          
Sbjct: 454 LVTARYYIVRLFRERLAIADLVPIGAATAHFAVRRGDAELQSILDKALLSISPDDLSDIV 513

Query: 403 IQWNRENS----LAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN-------KRKMEIEV 451
            +W           + +I                        R         ++ +  ++
Sbjct: 514 NRWRSPPGMSGQTWVDYILVITEILAIAAALLLFCLGWVTYQRRQIRVRARVEQALSDQL 573

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
             + ++ +     + + +  G +LS NR+  +  G   E+++ +       +N  +    
Sbjct: 574 RFVEALTDCMPPPLYVRDVNGRMLSCNRSYLQSVGLSSEEVMNRTVLELPMENFETAPEF 633

Query: 512 YLTEILSLDLRQTLEKIT-LGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEK 568
           + + ++++   +T+E +  +     E+ +   I   +              DI+E +Q  
Sbjct: 634 HRSYLMAMREGRTIEAVYPVALGGRERWIDHWIQPFRDSSGTIRGVICGWLDITEHRQLI 693

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
           ++L  AK +A++ S  K+ FLA +SHEIRTP+ A+IG  E+   +      +        
Sbjct: 694 DELEEAKNLADEASRAKTTFLATMSHEIRTPMNAVIGILELALKRAETGRVD---RSSIE 750

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
               S   +L+++ D+LDI++IESG+++L  +  +L E V     + +  A +KR+ +  
Sbjct: 751 IAYASAKSLLELIGDILDIARIESGRLSLSPKRANLRELVESVARVFEGLARQKRLSLVL 810

Query: 689 SFANNI-PRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNE--EVILRVRDT 744
              ++I   +L D    KQI  N++SNAI FT  G  +I I          +V L V DT
Sbjct: 811 EIDSSINGDVLLDAMRFKQILSNLVSNAIKFTDEGSIRIRIDGRQVEPSLLQVNLCVEDT 870

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G++  + ++  +PF Q+  + Q   EGTGLGL +++++ +   G+  + S   +GT I
Sbjct: 871 GIGISLGDQQQLFRPFAQVNRNLQ-NTEGTGLGLVISRSLCEMMGGRLVMSSELGQGTRI 929

Query: 805 EIIF 808
           ++  
Sbjct: 930 DVEL 933



 Score = 47.7 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 64/243 (26%), Gaps = 11/243 (4%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D +G +   +    +++G  + +++   + ++               L           +
Sbjct: 591 DVNGRMLSCNRSYLQSVGLSSEEVMNRTVLELPMENFETAPEFHRSYLMAMREGRTIEAV 650

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFR-GFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           +P+        ID    P    +    G   G+  +  +R   D     K L  + S   
Sbjct: 651 YPVALGGRERWIDHWIQPFRDSSGTIRGVICGWLDITEHRQLIDELEEAKNLADEASRAK 710

Query: 209 EIKKGHSSVE--KEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
                  S E       +              +V   +   A+       E    +    
Sbjct: 711 TTFLATMSHEIRTPMNAVIGILELALKRAETGRVDRSSIEIAYASAKSLLELIGDILDIA 770

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
                +       L+   K+     L  +    FE L+ +   SL    D   N     +
Sbjct: 771 RIESGR-------LSLSPKRANLRELVESVARVFEGLARQKRLSLVLEIDSSING-DVLL 822

Query: 327 DKC 329
           D  
Sbjct: 823 DAM 825


>gi|148256774|ref|YP_001241359.1| cell cycle control histidine kinase CckA [Bradyrhizobium sp. BTAi1]
 gi|146408947|gb|ABQ37453.1| cell cycle control histidine kinase CckA [Bradyrhizobium sp. BTAi1]
          Length = 892

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 109/653 (16%), Positives = 217/653 (33%), Gaps = 48/653 (7%)

Query: 182 GIVHVNRVDNDPRALGKRLDKKFSHLHEIK-KGHSSVEKEKYDIFSQQSPPPHLRMKNKV 240
           GIV       D   +G   D  F  L     +GH       Y   +  +     R   +V
Sbjct: 113 GIVRFADKTTDDPVMGAIADHAFDGLAVTDPRGHVVYANAAYLAMTGAASAQEARPVERV 172

Query: 241 -SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
                +       +LK  +      EE  +   E      L    +              
Sbjct: 173 FIGNPDVSEAVFRLLKAAREGKRQQEEVRITAAEGGQARWLRMRVRPLGQTKRYARYAVW 232

Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVD 358
                 R+       F E ++   E +D  P  FF V   G+L Y N +      Y   +
Sbjct: 233 SIADITRDRERQEDVFQELQHAI-EYLDHAPCGFFSVSPEGSLVYVNATLANWLDYDLAE 291

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA-MTFIP 417
                     L  +  +S + A     +             +     + +   A +    
Sbjct: 292 IASG-----GLKLSDVVSGDGASLLTSIVAVPGEVRTEVFDIDLKMRSGKTMPARLYHKL 346

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
              A+  P       I     +    +R  E+  M+     + T   IA ++R G ++  
Sbjct: 347 AFGADGKPGASRTLVISRARDERSDPERAAEVRFMRF---FDHTPMAIATVDRGGAVVRA 403

Query: 478 NRAVSKLFG-YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
           N   +KL      +    K     + Q    ++   + +              +    +E
Sbjct: 404 NARYAKLAQSVSGDAAAAKSIFRTVSQRDRHLLIAAINQAAE-GQADIPPVEVMLDGAKE 462

Query: 537 KLLSLRIIIKKLPFSSCYSLTMHDI--SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
           +     +   +       +  ++ +  +E +  +N+++ ++K+              ++H
Sbjct: 463 RFGQFFVTAVEEDERETEAAIVYMLETTERRALENQINQSQKM-----EMVGQLAGGIAH 517

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           +    L+AI+  ++ + N       +P + +    I ++      +V  LL  S+    +
Sbjct: 518 DFNNVLSAIMMANDFLLNAH--KPTDPSFQDIMQ-IKQNATRAATLVRQLLAFSR----R 570

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714
             L  + + L +A+S+   L++    EK + +      ++  +  D+   +Q+ +N+  N
Sbjct: 571 QTLRPQVLDLGDALSDLTMLLRRLIGEK-VKLDLVHGRDLWPVKVDVSQFEQVVVNLAVN 629

Query: 715 AIHFTPSGGQIIISTT--------------HTSNEEVILRVRDTGVGMTNYELEKAMKPF 760
           A    P GG++ + T                   + V + + DTG G+     EK  +PF
Sbjct: 630 ARDAMPDGGKLSVRTANVSADEAAQGAYKGMPVADYVRIEISDTGTGIPAEIREKIFEPF 689

Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
                S +  G+GTGLGL     ++    G  Y+ S   KGT  +I  P +  
Sbjct: 690 F----STKEVGKGTGLGLSTVYGIIKQTGGFIYVDSEVGKGTTFQIFLPRHHV 738



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/373 (11%), Positives = 94/373 (25%), Gaps = 20/373 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL--KRQNTWYGK 146
            D  G++   +       G  A      R  +   I + D +  +  LL   R+     +
Sbjct: 141 TDPRGHVVYANAAYLAMTG--AASAQEARPVERVFIGNPDVSEAVFRLLKAAREGKRQQE 198

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                         + +   P+  + + ++ +  + I  + R       + + L     +
Sbjct: 199 EVRITAAEGGQARWLRMRVRPL-GQTKRYARYAVWSIADITRDRERQEDVFQELQHAIEY 257

Query: 207 LHEIKKGHSSVEKEKYDI-----FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE--KY 259
           L     G  SV  E   +      +         + +    L++  +     L T     
Sbjct: 258 LDHAPCGFFSVSPEGSLVYVNATLANWLDYDLAEIASGGLKLSDVVSGDGASLLTSIVAV 317

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
           P     E    + +      +      +           S   +  R     S      E
Sbjct: 318 PGEVRTEVFDIDLKMRSGKTMPARLYHKLAFGADGKPGASRTLVISRARDERSDPERAAE 377

Query: 320 NLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
                  D  P+    V   G +  AN  +  L +  S D         ++       D 
Sbjct: 378 VRFMRFFDHTPMAIATVDRGGAVVRANARYAKLAQSVSGDA----AAAKSIFRTVSQRDR 433

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
           + +   +   ++     A      +  +        F          E         E  
Sbjct: 434 HLLIAAINQAAEGQ---ADIPPVEVMLDGAKERFGQFFVTAVEEDERETEAAIVYMLETT 490

Query: 439 DTRINKRKMEIEV 451
           + R  + ++    
Sbjct: 491 ERRALENQINQSQ 503



 Score = 40.0 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 39/385 (10%), Positives = 102/385 (26%), Gaps = 20/385 (5%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMI--GMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144
           +++   G L  ++  L   +     ++   G++L DV           I  +     T  
Sbjct: 266 FSVSPEGSLVYVNATLANWLDYDLAEIASGGLKLSDVVSGDGASLLTSIVAVPGEVRTEV 325

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
               L    G    +P  L     +  + +    R   I       +DP    +    +F
Sbjct: 326 FDIDLKMRSGKT--MPARLYHKLAFGADGKPGASRTLVISRARDERSDPERAAEVRFMRF 383

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT--EYYAHKDDVLKTEKYPLL 262
                +               ++ +        +  ++ +     + +D  L        
Sbjct: 384 FDHTPMAIATVDRGGAVVRANARYAKLAQSVSGDAAAAKSIFRTVSQRDRHLLIAAINQA 443

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
              ++ +P  E        +   + +   ++ + +E+   + +    +     +   N +
Sbjct: 444 AEGQADIPPVEVMLD-GAKERFGQFFVTAVEEDERETEAAIVYMLETTERRALENQINQS 502

Query: 323 P--ETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
              E V +                N     +        +                  NA
Sbjct: 503 QKMEMVGQLAGGIAHD-------FNNVLSAIMMANDF-LLNAHKPTDPSFQDIMQIKQNA 554

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
            +   L R      +    L     +  ++L+       +     +         +    
Sbjct: 555 TRAATLVRQL-LAFSRRQTLRPQVLDLGDALS-DLTMLLRRLIGEKVKLDLVHGRDLWPV 612

Query: 441 RINKRKMEIEVMQLC-SILEATSDG 464
           +++  + E  V+ L  +  +A  DG
Sbjct: 613 KVDVSQFEQVVVNLAVNARDAMPDG 637


>gi|260754346|ref|ZP_05866694.1| integral membrane sensor signal transduction histidine kinase
           [Brucella abortus bv. 6 str. 870]
 gi|260757565|ref|ZP_05869913.1| integral membrane sensor signal transduction histidine kinase
           [Brucella abortus bv. 4 str. 292]
 gi|260761390|ref|ZP_05873733.1| integral membrane sensor signal transduction histidine kinase
           [Brucella abortus bv. 2 str. 86/8/59]
 gi|260883371|ref|ZP_05894985.1| integral membrane sensor signal transduction histidine kinase
           [Brucella abortus bv. 9 str. C68]
 gi|260667883|gb|EEX54823.1| integral membrane sensor signal transduction histidine kinase
           [Brucella abortus bv. 4 str. 292]
 gi|260671822|gb|EEX58643.1| integral membrane sensor signal transduction histidine kinase
           [Brucella abortus bv. 2 str. 86/8/59]
 gi|260674454|gb|EEX61275.1| integral membrane sensor signal transduction histidine kinase
           [Brucella abortus bv. 6 str. 870]
 gi|260872899|gb|EEX79968.1| integral membrane sensor signal transduction histidine kinase
           [Brucella abortus bv. 9 str. C68]
          Length = 532

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 92/349 (26%), Positives = 168/349 (48%), Gaps = 4/349 (1%)

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
             ++ EGI+ S +   +KL G   + +        +           L ++ +    + +
Sbjct: 134 FGLDIEGIVSSVDGETAKLLGVQPKMLEGTALIDRVHVADRVQYLSLLADLRAGMATRKV 193

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
           +            +      +        +L    +   ++  ++++  K   E E   K
Sbjct: 194 DVRLRSIE-NGNPVFRAYRFEGAGSDRAITLIGRSLEGEQKLLDEIAMLKAELESERIGK 252

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
              LA VSHE+RTPL +IIGFS+++ ++  G L + R  EYA  I +SG+ +L++VN +L
Sbjct: 253 GRLLATVSHELRTPLNSIIGFSDMLTHEIGGKLASDRQREYAGLIHQSGHYLLELVNAVL 312

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
           D S++E+G  ++  +     +AV    +++   A +K +       N +  ++AD R+V+
Sbjct: 313 DNSRLETGTYSIAPQSFVFRDAVEMCTAVMLPQAEKKGVAFCHRVGNGVGELVADRRAVQ 372

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNE---EVILRVRDTGVGMTNYELEKAMKPFGQ 762
           QI LN+ +NA+ FT SGG + I       +    +   V DTG+G+   +L++   PF +
Sbjct: 373 QILLNLATNAVKFTQSGGCVTIDAARVMADGCPMLEFSVSDTGIGIEPEDLQRIGTPFVR 432

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
             NS     EG+GLGL + K +V+ + G   + S P +GT++ I  PL 
Sbjct: 433 AGNSYTQAQEGSGLGLSVVKGLVERHQGSMQLKSRPGEGTVVMIRLPLA 481


>gi|167621903|ref|YP_001676688.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp.
           K31]
 gi|167351644|gb|ABZ74374.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp.
           K31]
          Length = 579

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 72/258 (27%), Positives = 125/258 (48%), Gaps = 6/258 (2%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E  +++  L    + A   S  KS FLA +SHE+RTP+  ++G +  +   +     +  
Sbjct: 189 ELLEQREVLRAQTEAANAASQAKSSFLAMMSHELRTPMNGVLGMAHALTLSKL----DSH 244

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
            + + + + RSG  ++ I+NDLLDISKIE+GK+ L   P  L E   +   L +  A+ K
Sbjct: 245 QVSHLDMLLRSGQGLMTILNDLLDISKIEAGKLELEIIPFDLSELGRQVEDLWRDAAHIK 304

Query: 683 RILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
            + +    A + P  +  D   ++Q+ +N++SNA+ FT  G ++ +S   + +    + V
Sbjct: 305 GVSLVCEVAFSGPHWVSGDPTRLRQVLINLVSNALKFTSQG-EVRLSIWRSEDGLCQIAV 363

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            DTG G+   +     + F Q   S   +  GTGLGL + K +V    G+  + S    G
Sbjct: 364 TDTGPGIPVNQQALLFQAFSQADASITRKFGGTGLGLAICKQLVSLMDGRIDLDSREGVG 423

Query: 802 TLIEIIFPLYDTSHPHDC 819
           +   +  PL       + 
Sbjct: 424 STFTVSLPLPTAEAVQEA 441


>gi|298387314|ref|ZP_06996867.1| two-component system sensor protein [Bacteroides sp. 1_1_14]
 gi|298259983|gb|EFI02854.1| two-component system sensor protein [Bacteroides sp. 1_1_14]
          Length = 538

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 94/514 (18%), Positives = 183/514 (35%), Gaps = 54/514 (10%)

Query: 324 ETVDKCPIPFFVYS---HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
           + +D  P P  V         +Y N    L +  K  + I   G     +   +      
Sbjct: 56  DILDNLPFPIMVKDIQNSFRYYYWNKESELQSGIKREEAI---GCTDYEIYGEERGRKYR 112

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
                L ++D       A       +   ++  T           +         +    
Sbjct: 113 DVDESLVQAD---KIYRAEESYSTVDG--AVHDTIAVKSIIKWKEKKKWLLVTRWDITRL 167

Query: 441 RINKRKMEIEVMQLCSILE-------ATSDGIAIINREGIILSTNRAVSKLFGYP----- 488
           +  +R++     +L   L        + + G+  I++  ++        +          
Sbjct: 168 KTYERELIAAKEELEKALNKQKLALKSVNFGLIYIDKNYLVQW-----EETTQIASLVKG 222

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
                 +                   + +            +  T +   +   +    +
Sbjct: 223 RHYTPGQICYKTSALRDTPCEQCAFQKAIEQGK-------IIRHTIQIDQVDFEVTATPV 275

Query: 549 PFSSCY-----SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
             +         L   DI+E  +    L  AK+ AE+ +  KS FLA +SHEIRTPL AI
Sbjct: 276 YDNEGIEIIGGLLRFEDITEKVKMDKMLQEAKEKAEESNRLKSAFLANMSHEIRTPLNAI 335

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           IGFS++I              EY   +  +  L+L +++D+LD+SKIE+G M     P  
Sbjct: 336 IGFSDMI----CQTGEEEEKQEYMKIVSSNNELLLQLIDDILDLSKIEAGTMEFTLAPTD 391

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
           +++ +      +Q       + I  +       +  D   + Q+ +N  +NA+ FTP G 
Sbjct: 392 INDLMEGICRQMQEKNTSPDVAITFTEKAEECILNTDRVRLSQVIINFTNNAMKFTPKGS 451

Query: 724 QIIISTTH---TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
              I   +    + +E+   V+DTG+G+   ++ +  + F ++        +GTGLGL +
Sbjct: 452 ---IQMGYRIDEAKDEIYFYVKDTGIGIPADKINEVFERFVKLNTF----AKGTGLGLAI 504

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
            + +V+   G     S   KG+      P+++ +
Sbjct: 505 CRVIVERLGGTIGADSKEGKGSCFWFRLPIHEKA 538


>gi|167032264|ref|YP_001667495.1| multi-sensor hybrid histidine kinase [Pseudomonas putida GB-1]
 gi|166858752|gb|ABY97159.1| multi-sensor hybrid histidine kinase [Pseudomonas putida GB-1]
          Length = 917

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 79/244 (32%), Positives = 143/244 (58%), Gaps = 10/244 (4%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  A+K A + S  KS+FLA +SHEIRTPL  I+GF+ +++     P    R ++Y + 
Sbjct: 271 ELDMARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSEMTP----RQLDYLST 326

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I++S + +L I+N++LD SKIE+GK+ L   P +L + + + ++++   A+ K++ + + 
Sbjct: 327 IEKSADNLLGIINEILDFSKIEAGKLVLDSIPFNLRDLIQDTLTILAPAAHAKQLELLSL 386

Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIST----THTSNEEVILRVRDT 744
              + P  ++ D   +KQI  N++SNAI FT  G  I++       H  + ++ + V+DT
Sbjct: 387 IYRDTPSSLIGDPLRLKQILTNLVSNAIKFTREG-TIVVRAMLDDEHEDHAQLRISVQDT 445

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G++  ++    + F Q  NS   +  GTGLGL ++K +++   G+  + STP +G+  
Sbjct: 446 GIGLSPQDVRTLFQAFSQADNSLARQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSQF 505

Query: 805 EIIF 808
            I  
Sbjct: 506 WISL 509


>gi|108762962|ref|YP_628459.1| sensory box histidine kinase [Myxococcus xanthus DK 1622]
 gi|108466842|gb|ABF92027.1| sensory box histidine kinase [Myxococcus xanthus DK 1622]
          Length = 642

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 75/571 (13%), Positives = 188/571 (32%), Gaps = 36/571 (6%)

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
               +   +                   ++     +                 +  A   
Sbjct: 94  APSAVAAEQGGPFHALGGRRIFPPEMSRQRGRGAPMSKAHIYEEGRSGWGAPGAAEARHP 153

Query: 317 EGENLTPETVD---KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
            G +  P  +           V +HG + + + +    T  +  +  +       L   P
Sbjct: 154 SGPDFAPALLRLGQALQAALIVDAHGRVLWMDDALTHATGPQG-EPFQGRSVAEVLARLP 212

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
            L+         L                +    E    +      +  +        G 
Sbjct: 213 WLAQAMQP---ALQGKAGVHEEPGLTAFVLPMFDEQGTLLGACARLQLPESSMGQVAEGG 269

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
                   +           L +  ++ ++G+ +++    + + N+    ++G   E ++
Sbjct: 270 LTRHAPESLAHMN-----SVLRATFDSIAEGVIVVDLNKRVTAFNKRFLDIWGLTEEMMV 324

Query: 494 RKPFTV-FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK-EEKLLSLRIIIKKLPFS 551
            +      +            T  +      + E         + ++L  + + +++  +
Sbjct: 325 DRDAERVLVRAAGGVKHPESFTSRIRERFEPSEEVDVETVELLDGRILERKSLPQRMGGA 384

Query: 552 S-CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
                 +  +++  +Q + +     + A++    + DFL+  +HE++TPLT +    +++
Sbjct: 385 IIGRVWSYREVTAERQAEAERERLLREAQEAIRVRDDFLSIAAHELKTPLTPLKLHLQML 444

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
           +    G  G+     + +      + +  +VNDLLD S+I+ G++ L   PV L E   +
Sbjct: 445 RQ--HGAEGDGASARHVDKSLMQVSRLTGLVNDLLDTSRIQEGRLTLKHGPVVLQELAHD 502

Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
            +S ++L +   R+            +L D   + Q+ +N++ NA  ++PSGG + +   
Sbjct: 503 VVSEMRLSSAHHRV--EYEAPEAPLVVLGDADRLAQVLVNLMENAFKYSPSGGTVRVRVA 560

Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS--------QQIRGEGTGLGLPLAK 782
                   + V+D G+G+   + E   + F +  N+                     +  
Sbjct: 561 REDR-HAHVSVQDEGIGIPRDQQEHLFERFFRARNAPISGFGGLGLGLY--------ICG 611

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
            +V+ + G+ ++ S    G+      PL  T
Sbjct: 612 DIVERHGGRLWVESVLGHGSTFRFTVPLAST 642



 Score = 39.6 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 43/455 (9%), Positives = 113/455 (24%), Gaps = 43/455 (9%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +DAHG +  + + L    G       G  + +V   L       +   ++          
Sbjct: 175 VDAHGRVLWMDDALTHATGPQGEPFQGRSVAEVLARL-----PWLAQAMQ--------PA 221

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR-ALGKRLDKKFSHL 207
           L    G +    +    LP++       G      +  + +       L +   +  +H+
Sbjct: 222 LQGKAGVHEEPGLTAFVLPMFDEQGTLLGACARLQLPESSMGQVAEGGLTRHAPESLAHM 281

Query: 208 HEIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
           + + +       E   +          + R  +      E    +D      +       
Sbjct: 282 NSVLRATFDSIAEGVIVVDLNKRVTAFNKRFLDIWGLTEEMMVDRDAERVLVRAAGGVKH 341

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
             S   +             ++ F   +    E+ E L  R     S     G  +    
Sbjct: 342 PESFTSR------------IRERFEPSEEVDVETVELLDGRILERKSLPQRMGGAIIGR- 388

Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL----LDAPKLSDNNAI 381
                   + Y          +       ++ + I +     ++    L  P       +
Sbjct: 389 -------VWSYREVTAERQAEAERERLLREAQEAIRVRDDFLSIAAHELKTPLTPLKLHL 441

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
           + +  + ++    +A     ++      +  +  +      Q      ++G         
Sbjct: 442 QMLRQHGAEGDGASARHVDKSLMQVSRLTGLVNDLLDTSRIQEGRLTLKHGPVVLQELAH 501

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGII--LSTNRAVSKLFGYPVEDILRKPFTV 499
               +M +         EA    + ++     +  +  N  +   F Y       +    
Sbjct: 502 DVVSEMRLSSAHHRVEYEAPEAPLVVLGDADRLAQVLVN-LMENAFKYSPSGGTVRVRVA 560

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
             +++    +      I         E+       
Sbjct: 561 REDRHAHVSVQDEGIGIPRDQQEHLFERFFRARNA 595


>gi|78221238|ref|YP_382985.1| PAS/PAC sensor hybrid histidine kinase [Geobacter metallireducens
           GS-15]
 gi|78192493|gb|ABB30260.1| PAS/PAC sensor hybrid histidine kinase [Geobacter metallireducens
           GS-15]
          Length = 508

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 92/489 (18%), Positives = 193/489 (39%), Gaps = 50/489 (10%)

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH-----TIQWNR 407
             ++++ +        LLD      +       + +     +      H      ++  +
Sbjct: 36  GLEALEMLAREHYDLILLDIRMPRLDGIEVLERIRQEWPELVVVMMTAHGSEDIAVEAMK 95

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
           + ++     PF   +               ++    +R++E E  ++ +IL+  ++ +  
Sbjct: 96  KGAVDYISKPFSSDDMKKRVERAIEYNRTRLENERLQREVEEERRKMEAILQGMAEALVA 155

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
           ++R+G+++S NR  ++LFG     +  +P    L    P+        + + +    +  
Sbjct: 156 VDRQGLVMSINRTAAELFGVDAAAVHARPVEELLSAAIPADRLPCRVVLATGEPCLDVAY 215

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESS 583
                    +++ +      L  ++   +     + DIS  K  + +             
Sbjct: 216 DLRLP---GRIVPVLSSAAPLANAAGEMIGSVEIIRDISALKALEQE------------- 259

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
            + DF++ +SH+++TP+TAIIG  +++K  R GP+ NP    Y +    S   ++D+++ 
Sbjct: 260 -REDFVSMLSHDLKTPITAIIGSIDLVKEGRLGPV-NPEQSMYLDAAVESCAEMVDMIDT 317

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703
           LLD+ + E+G+M        L   +   +   +  A    + +  S        L D + 
Sbjct: 318 LLDVHRFEAGRMVTTLVEEELGPLLQRTVGRFEPVARHSGLELTLSLPGAPVTFLVDRKQ 377

Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTH----------------------TSNEEVILRV 741
             ++  N+LSNA+ FT  GG I +                               +++ V
Sbjct: 378 FGRLLGNLLSNALKFTTEGG-IEVRAELPENAAAAAQGITPGAYPTERLPREGRYLLVSV 436

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            DTG G+    L      F Q  N +  +  GTGLGL   + ++DA+ G  +  S P +G
Sbjct: 437 SDTGAGIPADSLVTIFDRFVQARNRKMGKSSGTGLGLAFCRKVMDAHHGFIWAESEPDRG 496

Query: 802 TLIEIIFPL 810
           +   ++FPL
Sbjct: 497 STFRMLFPL 505



 Score = 51.2 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 45/424 (10%), Positives = 105/424 (24%), Gaps = 68/424 (16%)

Query: 22  TQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPR 81
           + D  KK+++   E  +++ EN       +                L +           
Sbjct: 107 SSDDMKKRVERAIEYNRTRLENERLQREVEEERRKMEAILQGMAEALVA----------- 155

Query: 82  TVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN 141
                  +D  G +  I+    +  G  A  +    + ++              +L    
Sbjct: 156 -------VDRQGLVMSINRTAAELFGVDAAAVHARPVEELLSAAIPADRLPCRVVLATGE 208

Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
                     + G    VP+  +A P+ +   E  G      V + R  +  +AL +  +
Sbjct: 209 PCLDVAYDLRLPGRI--VPVLSSAAPLANAAGEMIG-----SVEIIRDISALKALEQERE 261

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
              S L    K   +      D+            + ++  +    +   D        +
Sbjct: 262 DFVSMLSHDLKTPITAIIGSIDLVK----------EGRLGPVNPEQSMYLDAAVESCAEM 311

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
           +   ++ L +   F    +     ++  G L   +   FE ++  +   L+         
Sbjct: 312 VDMIDTLL-DVHRFEAGRMVTTLVEEELGPLLQRTVGRFEPVARHSGLELTLSLP----- 365

Query: 322 TPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
                   P+ F V            F  L      + ++               +  A 
Sbjct: 366 ------GAPVTFLVDR--------KQFGRLLGNLLSNALK--------FTTEGGIEVRAE 403

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
            P     + +     +     +       L                        +     
Sbjct: 404 LPENAAAAAQGITPGAYPTERLPREGRYLLV-----SVSDTGAGIPADSLVTIFDRFVQA 458

Query: 442 INKR 445
            N++
Sbjct: 459 RNRK 462


>gi|327542128|gb|EGF28621.1| multi-sensor hybrid histidine kinase [Rhodopirellula baltica WH47]
          Length = 690

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 91/478 (19%), Positives = 193/478 (40%), Gaps = 33/478 (6%)

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
                +      P++  + AI+   +            R   +         +  +P E 
Sbjct: 89  GERFLIEDARVDPRVVAHPAIEEYGIVSYAG--FPIRTRSGEVL---GTLCVVDVVPREW 143

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ-LCSILEATSDGIAIINREGIILSTNR 479
                E + +     E     I   + E +  +   ++++A+   + +++ +G +   N 
Sbjct: 144 TEDELETLRELSASVESEIELIAAAERERDHARMFQTMIQASPLSVIVMDYDGRVELWNE 203

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQ--NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
           A   +FG+   ++L  P  +  +   +    +   + +        T       +  E +
Sbjct: 204 ASEAIFGWTSAEVLGYPLPIIPDHKLDECQRIRDAVGDGSVFRCVDTYRAKGEDANGERR 263

Query: 538 LLSLRIIIKKLP----FSSCYSLTMHDIS-------EWKQEKNKLSHAKKIAEKESSHKS 586
            + + +    L      S    L + D++       E ++   +L   K +  +    K+
Sbjct: 264 TVHVNVSAVSLHRYDGHSDRILLIIDDVTQSHADTLERERLFRELQKEKALLSEMDERKN 323

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
            FLA ++HE+R PLT I    +++   RF      +  E +  ++   + ++ +++DL+D
Sbjct: 324 RFLALLAHELRNPLTPIGNAVDLL---RFAAKDPNQVNEISTVLESQVHQLVRLIDDLMD 380

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVK 705
           +S+I  G+++L  E VS+ + V+ +   V+   NE    +           +  D   + 
Sbjct: 381 VSRITRGRIDLQRETVSIHDIVANSCRAVESLCNEMGHELIRRTDPKQSLHVHGDYVRLT 440

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           Q+  N+L+NA  +TP  G+I IS       +V + V+D GVG+     +   + F Q+  
Sbjct: 441 QVVTNLLNNACKYTPPSGRIEISCGQVD-GQVEIAVKDNGVGIPPEHRKGIFEMFTQVDE 499

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYI-----FSTPAKGTLIEIIFPLYDTSHPHD 818
           + +    G G+GL L K +V+ + GK  +      ST   G+   I  P  D + P++
Sbjct: 500 TLKDSRGGLGIGLTLVKQLVELHGGKVSLVDSDDTST---GSEFRIHLPCLD-AKPNE 553



 Score = 46.2 bits (108), Expect = 0.024,   Method: Composition-based stats.
 Identities = 13/180 (7%), Positives = 44/180 (24%), Gaps = 13/180 (7%)

Query: 280 LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-H 338
           + +   +    TL+  S      +      + +    +   +    +   P+   V    
Sbjct: 139 VPREWTEDELETLRELSASVESEIEL---IAAAERERDHARMFQTMIQASPLSVIVMDYD 195

Query: 339 GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398
           G +   N +   +  + S + +         L        +  + +     D +      
Sbjct: 196 GRVELWNEASEAIFGWTSAEVLGYP------LPIIPDHKLDECQRIRDAVGDGSVFRCVD 249

Query: 399 RLHTIQWNR---ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
                  +      ++ +             +     I  +   +  +  + E    +L 
Sbjct: 250 TYRAKGEDANGERRTVHVNVSAVSLHRYDGHSDRILLIIDDVTQSHADTLERERLFRELQ 309



 Score = 44.2 bits (103), Expect = 0.10,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 75/241 (31%), Gaps = 12/241 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D  G ++  +E      G  + +++G  L  +     +D    I D +   + +    T
Sbjct: 192 MDYDGRVELWNEASEAIFGWTSAEVLGYPLP-IIPDHKLDECQRIRDAVGDGSVFRCVDT 250

Query: 149 LWPIE----GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
                    G    V ++++A+ ++  +          I+ +        A     ++ F
Sbjct: 251 YRAKGEDANGERRTVHVNVSAVSLHRYDGHSD-----RILLIIDDVTQSHADTLERERLF 305

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
             L + K   S +++ K    +  +    LR                     +   + T 
Sbjct: 306 RELQKEKALLSEMDERKNRFLALLAHE--LRNPLTPIGNAVDLLRFAAKDPNQVNEISTV 363

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
            ES + +        ++     +    LQ  +    + +++      S   + G  L   
Sbjct: 364 LESQVHQLVRLIDDLMDVSRITRGRIDLQRETVSIHDIVANSCRAVESLCNEMGHELIRR 423

Query: 325 T 325
           T
Sbjct: 424 T 424


>gi|261252536|ref|ZP_05945109.1| putative sensory box sensor histidine kinase/response regulator
           VieS [Vibrio orientalis CIP 102891]
 gi|260935927|gb|EEX91916.1| putative sensory box sensor histidine kinase/response regulator
           VieS [Vibrio orientalis CIP 102891]
          Length = 1198

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 93/367 (25%), Positives = 162/367 (44%), Gaps = 17/367 (4%)

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
           E E   L SI+      + I +R   ++ +N +      Y  +  L              
Sbjct: 527 EKEKEWLKSIITELDSWVFIHDRHNKLMLSNCS-----RYINKQCLGCTLNDNFSNQYLV 581

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK--LPFSSCYSLTMHDISEWK 565
                + ++LS            G     + +S +    +     +      + DISE K
Sbjct: 582 DNEEEVAKVLS-GQSIVDYHEVKGCDNNLRHISRQRKAIRSLTANTEYVLTVLDDISEQK 640

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI-KNQRFGPLGNPRYI 624
           Q +++L  A++ A++    +  FLA +SHE+RTP+ AI G  E+    ++ G     R  
Sbjct: 641 QRESELITAREEAQQAVIAREQFLATMSHELRTPIAAIQGSLELASLREKEG-----RTA 695

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           E      +S   +  +V+++LD SK+ + +  L+   V+L E + E+I   +  A  K +
Sbjct: 696 ELLVQAQKSTRHLNVLVDEVLDFSKLNAQQFILNPTKVNLLELLCESIRSYEQAAQAKGL 755

Query: 685 LIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
           + +      + R    D   + QI  N+LSNAI FT SG  + I  T T   E+ L + D
Sbjct: 756 VYQVEINPLVCRFAQMDEVRLVQILNNLLSNAIKFTSSGF-VKIEVTST-QAELKLTISD 813

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           +G+GM++ +++K +KPF Q       +  G+GLGL +   +V    G   + S P  G+ 
Sbjct: 814 SGIGMSSEQIDKVLKPFTQADAGVTRQYGGSGLGLSIVDKLVTCMDGNMSVESIPNVGSA 873

Query: 804 IEIIFPL 810
             +  PL
Sbjct: 874 FYLTIPL 880


>gi|281417008|ref|ZP_06248028.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum
           JW20]
 gi|281408410|gb|EFB38668.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum
           JW20]
          Length = 1160

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 73/248 (29%), Positives = 127/248 (51%), Gaps = 3/248 (1%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           + ++   +L    +  EK + ++S+FLA +SHE+RTPL +II  S+++  ++     + +
Sbjct: 516 DLERTTRELRLRTEELEKVNKYRSEFLANMSHELRTPLNSIILLSKMLARKKINEF-DEK 574

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
            +E    I+++G  +L ++ND+LD+SK+ESGKMNL+       E + +   + +  A EK
Sbjct: 575 DMEKIEVINKAGQELLRLINDVLDLSKVESGKMNLNIFTFHSSELMEDLRQMFESSAKEK 634

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI-IISTTHTSNEEVILRV 741
            I      + N   ++ D   + QI  N LSNA  FT  G  I           +VI  V
Sbjct: 635 NISFFVEDSINS-MLVGDRDKISQILRNFLSNAFKFTSEGSVILKAEMDKDRENDVIFSV 693

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            DTG+G+    +    + F Q+  +   +  GTGLGL ++K + D   G+  + S   +G
Sbjct: 694 TDTGIGIPEEHISDIFQEFRQVDGTISRKYGGTGLGLSISKKLADLMKGEIEVRSKIGEG 753

Query: 802 TLIEIIFP 809
           +   +  P
Sbjct: 754 STFFLKLP 761


>gi|149203885|ref|ZP_01880854.1| multi-sensor hybrid histidine kinase [Roseovarius sp. TM1035]
 gi|149143002|gb|EDM31044.1| multi-sensor hybrid histidine kinase [Roseovarius sp. TM1035]
          Length = 854

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 99/539 (18%), Positives = 192/539 (35%), Gaps = 26/539 (4%)

Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV-DKCPIPFFVYSHGNLFYANPS 347
             +L   +      +          Y             +   +         +     S
Sbjct: 68  LASLYALTGPEENLVDQVRRQFDILYSRATALRDGRVYREVLELDIAHADLDRVSELLAS 127

Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
            + +      D  +    L  L        +    P+    +    +AA A+    +   
Sbjct: 128 MVPIIDGDPGDIFKERARLIQL-------GSRMADPIRNIAARG--LAADAQRSDSERAA 178

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
             +  ++            +     +       R+   +   +  +L +IL  + D + +
Sbjct: 179 LTAKILSLAVLILMMLAALSSLLLLVWRVYRSYRMQAEQNISKSNRLTTILNTSQDAVLV 238

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH-----YLTEILSLDLR 522
           +  +G I  TN     L         R      L                L +  +    
Sbjct: 239 VGVDGWIEDTNARADDLLALTDRLTARIDLGDVLFCKGEDGTLKPLSGKLLRDTCASGPS 298

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES 582
           +  + I       E    L     +        L + DISE    + ++  +++ A    
Sbjct: 299 RREDVIVRNLEGREFAAELSADFARQGEGDICILFIRDISERLAAEAEIDRSREKALAGE 358

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
             K+ FLA +SHE+RTPL  I+G  E++ +    P       ++   +  SG L+L  + 
Sbjct: 359 RAKARFLAMISHEMRTPLNGILGALELLGDTGLTP----EQEKFTRIMRSSGQLLLTQIT 414

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT-SFANNIPRILADL 701
           D LD+++  + ++ L      LD+ ++E     Q  A  +   +R  +  +   R+  D 
Sbjct: 415 DALDLTQAAARQIVLRPAAFDLDQLLAELTETQQGPAQARGNSLRLLAPQDGFGRVTGDR 474

Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTH-----TSNEEVILRVRDTGVGMTNYELEKA 756
             + Q+ LN++SNAI FT  G +I +  +      T  + +  +V DTG+G++   L   
Sbjct: 475 ARIYQVLLNLVSNAIKFTRDG-EITLDVSRLSSKDTEPDMIEFQVIDTGIGISADNLPNV 533

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            + F ++ ++   R EGTGLGL +A+ +V    G   + S   +G+L  +  PL   S 
Sbjct: 534 FEDFMRVQDTTGDRPEGTGLGLGIARQLVKLMKGTIGVESELGEGSLFWVRLPLPAASA 592


>gi|315127524|ref|YP_004069527.1| phosphate regulon sensor protein phoR [Pseudoalteromonas sp.
           SM9913]
 gi|315016038|gb|ADT69376.1| phosphate regulon sensor protein phoR [Pseudoalteromonas sp.
           SM9913]
          Length = 448

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 67/368 (18%), Positives = 143/368 (38%), Gaps = 29/368 (7%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           R  + ++   + +     EA  D + ++  +  I+  N+   K+ G        +     
Sbjct: 87  RKKRNELAELIRRFRDGAEAVPDAVVVLQNDLSIVWCNQLALKVLGLQWPVDHGQRLDNL 146

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
           +     +                +           E++L  R++           + + D
Sbjct: 147 IRDPKFAKYM--------RRKEFSDALELESGHSVEQVLEFRVMPYANTQ---LLVVVRD 195

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           ++  KQ +                + DF+A VSHE+RTPLT + G+ E++ +    P   
Sbjct: 196 VTRLKQLE--------------QMRKDFVANVSHELRTPLTVVTGYLEMLDSDSLPP--P 239

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
             + +    +      +  +VN LL +S+IE  K + + + V + + +    +  Q    
Sbjct: 240 AMWNKAQTTMLEQCKRMDSLVNQLLSLSRIEGAKRHSNDKAVKVPQLLKLIETEAQSINQ 299

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
           +K   +  +   ++  I      ++    N++ NAIH++  GG+I +      NE+    
Sbjct: 300 DKGHQLIFNIDASL-DITGAEDELRSAFSNLVFNAIHYSKPGGKIEVCWQRN-NEQACFS 357

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V D G G+    + +  + F ++  ++     G+GLGL + K ++  +  +  I S   K
Sbjct: 358 VTDNGDGIAPEHINRLTERFYRVDKARSRTTGGSGLGLAITKHVLTRHGSQLKINSELGK 417

Query: 801 GTLIEIIF 808
           G+     F
Sbjct: 418 GSCFSFAF 425


>gi|304310368|ref|YP_003809966.1| putative response regulator receiver [gamma proteobacterium HdN1]
 gi|301796101|emb|CBL44306.1| putative response regulator receiver [gamma proteobacterium HdN1]
          Length = 1044

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 93/469 (19%), Positives = 194/469 (41%), Gaps = 26/469 (5%)

Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD--RTCIAASARLHTIQWNRENSLAMTF 415
           D  E   GL  + +        A+  + L      R   A   RL               
Sbjct: 308 DANEALAGLDFVRERAIWVGCIAVVILFLVAWTFARHISAPIQRLSEWAKTLSPGNLDAR 367

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII- 474
           +    A++  +              +++  ++     +  ++L++  D I     E  I 
Sbjct: 368 LDVVSADEIGDLGRVLDDMRH--HLKVSMDEISNAKERYQAVLDSI-DCIVW---EAQIS 421

Query: 475 ----LSTNRAVSKLFGYPVEDILRK-------PFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
               L  +  V  + G   +D   +        +  ++  +    ++   +  ++     
Sbjct: 422 PIRMLLVSGKVESVLGITNDDASEEKVSEWLLHWREWVHPDYHKALSQAFSHAITNAQDT 481

Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLP-FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES 582
            ++                I +             M DI++  + K ++  A+ +A   +
Sbjct: 482 FVQFQARHQNGNWVWFKAFISVVISGIRVVGLRGVMVDITDVYRAKEEVQKARDLAVSTA 541

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
            +KS FLA VSHEIRTP+  ++G  ++++        N    +      +SG  +L +V+
Sbjct: 542 ENKSRFLAIVSHEIRTPMNGLLGMLDLLRENNG---LNDEQKDTLQVAWQSGRNLLSLVD 598

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADL 701
           D++D ++IE+G+M  H+E  ++ E ++ A+++V   A ++ + +     +N+P  ++ D 
Sbjct: 599 DVMDFNRIEAGEMQFHYERTNIHELLNAALTMVAADAYKRGLDVGLVLESNLPELVVCDA 658

Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761
             V++I  N+LSNA+ FT  G  +++         + + V+DTGVG+   E ++  + F 
Sbjct: 659 VKVRRILANLLSNAVKFTQHGS-VLLWAEMLPGNRLYVEVKDTGVGIGAQEQQQLFQAFV 717

Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
              +S   R  G+GLGL LA+ +++A  G+  + S    G+      P+
Sbjct: 718 LGDSSSTRRHGGSGLGLVLAQRILEAMNGRIGVKSIKGLGSSFYFELPV 766


>gi|134291112|ref|YP_001114881.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia vietnamiensis
           G4]
 gi|134134301|gb|ABO58626.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia vietnamiensis
           G4]
          Length = 529

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 75/374 (20%), Positives = 145/374 (38%), Gaps = 19/374 (5%)

Query: 448 EIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
                +  +++ A +D  + +++ +G + + NR   ++ GY   +IL   F+ F      
Sbjct: 25  RFAEFRFETVVGAITDYAVFMLDPQGNVATWNRGAERIKGYLPAEILGHHFSRFYPPEAI 84

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDIS 562
           +        +         E       K+       + I  +         +     D++
Sbjct: 85  AAGRPAF-GLQEAVAHGGFEDEGWRVRKDGSRFWASVTITAVRGPGGQLVGFIKITRDMT 143

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E K+            E  +   S F+A ++HE+R  L  +     V+++    P   P 
Sbjct: 144 ERKRL--------AELEASTHRLSVFIAMLAHELRNHLAPLRHSVGVLQS---LPEPAPA 192

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             +  + + R    +  +V+DLLD+ +I +GK+ L   PV++ + V   +  VQ     +
Sbjct: 193 LAQCRDAVHRQVGQLTRLVDDLLDVGRITAGKLELDTAPVTIRDLVCRGVESVQPKLAAR 252

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
              +R    +    +  D   + Q+  N+L NA  F+  G QI I          ++RV 
Sbjct: 253 EQHLRVDVPDAPLVVRGDAARLVQVLHNLLDNASKFSQYGSQIDIGARMED-GAAVIRVS 311

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKG 801
           D G+G+    LE     F Q   +  +  +G GLGL + ++ V+ + G     S  P +G
Sbjct: 312 DRGIGIAPGALESIFDLFDQGNATGTLASDGFGLGLAICRSFVELHGGAISAESAGPGQG 371

Query: 802 TLIEIIFPLYDTSH 815
               +  P      
Sbjct: 372 ATFVVRLPAEPADQ 385



 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/262 (9%), Positives = 62/262 (23%), Gaps = 15/262 (5%)

Query: 74  FVFDP--IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN 131
           F F+      T    + +D  G +   +    +  G    +++G           I    
Sbjct: 29  FRFETVVGAITDYAVFMLDPQGNVATWNRGAERIKGYLPAEILGHHFSRFYPPEAIAAGR 88

Query: 132 HIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN 191
               L +       +   W +          +    +     +  GF    I        
Sbjct: 89  PAFGLQEAVAHGGFEDEGWRVRKDGSRFWASVTITAVRGPGGQLVGF--IKITRDMTERK 146

Query: 192 DPRALG----KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247
               L     +         HE++   + +      + S   P P       ++   +  
Sbjct: 147 RLAELEASTHRLSVFIAMLAHELRNHLAPLRHSVGVLQSLPEPAPA------LAQCRDAV 200

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
             +   L      LL     +  + E        +    +   ++Q       ++L   +
Sbjct: 201 HRQVGQLTRLVDDLLDVGRITAGKLELDTAPVTIRDLVCRGVESVQPKLAAREQHL-RVD 259

Query: 308 HPSLSAYFDEGENLTPETVDKC 329
            P              + +   
Sbjct: 260 VPDAPLVVRGDAARLVQVLHNL 281


>gi|218780746|ref|YP_002432064.1| histidine kinase [Desulfatibacillum alkenivorans AK-01]
 gi|218762130|gb|ACL04596.1| histidine kinase [Desulfatibacillum alkenivorans AK-01]
          Length = 485

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 90/266 (33%), Positives = 146/266 (54%), Gaps = 19/266 (7%)

Query: 563 EWKQEKNKLSHA-KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           E ++E+++  H  +   E     KSDFL+ VSHE+RTPL AI+GFS+V++ + FG L N 
Sbjct: 205 EREEEQSQRVHRLRLALEHAKRAKSDFLSSVSHELRTPLNAILGFSQVLQEEYFGGL-NT 263

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
           +  +Y N I  SG  +LD++ND+LD+S++ESG+M L  EP+ +   +  ++ L++  A +
Sbjct: 264 KQKQYVNDILESGKHLLDLINDILDLSRVESGEMKLEVEPLLISFILESSLHLIREKAFK 323

Query: 682 KRILIRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN----- 734
             I I    ++ I    ILAD   +KQI  N+LSNA  FTP  G I +      +     
Sbjct: 324 HGIEITVDVSDEIREMAILADHTKLKQILFNLLSNAAKFTPDKGAICVGARVIHDPVDGG 383

Query: 735 ---------EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
                      + + VRD+G+G+   + ++    F Q+      +  GTGLGLPLAK +V
Sbjct: 384 GSQDLDDNPGWIEVFVRDSGIGIEGDDKKRVFDDFYQVSAGLSGKTPGTGLGLPLAKRLV 443

Query: 786 DANMGKFYIFST-PAKGTLIEIIFPL 810
           + + G+ ++ S    +G+      P+
Sbjct: 444 ELHGGRIWVESEGRHQGSCFVFTLPI 469


>gi|157369035|ref|YP_001477024.1| hybrid sensory histidine kinase BarA [Serratia proteamaculans 568]
 gi|157320799|gb|ABV39896.1| multi-sensor hybrid histidine kinase [Serratia proteamaculans 568]
          Length = 906

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 88/335 (26%), Positives = 148/335 (44%), Gaps = 17/335 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           LF Y +   +  P    +               L   +   +             +++ +
Sbjct: 192 LFAYRLMRDVTGPIRNMVNTVDR-----IRRGQLDSRVEGFMLGELHMLKNGINSMAMSL 246

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 247 TAYHEEMQQNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTP 306

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+  +              +Y   I+RS N +L I+ND+LD SK+E+GK+ L  
Sbjct: 307 LNGVIGFTRQMLKTEMSVT----QTDYLQTIERSANNLLTIINDVLDFSKLEAGKLVLEH 362

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P +L E + E I L+   A+EK + +     N++P  ++ D   ++QI  N+L NAI F
Sbjct: 363 IPFALRETLDEVIVLLAPSAHEKGLELTLDVHNDVPEQVIGDSLRLQQIITNLLGNAIKF 422

Query: 719 TPSGGQ-IIISTTHTSNEEVILRVR--DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T +G   I +      + ++ L V+  DTG+G++  +  +  + F Q   S   R  GTG
Sbjct: 423 TETGNIDIRVELRGQQDRQMELEVQIHDTGIGISERQQSQLFQAFRQADASISRRHGGTG 482

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           LGL + + +V    G     S   +G+       L
Sbjct: 483 LGLVITQKLVKEMGGDICFHSQLNRGSTFWFHITL 517


>gi|59712594|ref|YP_205370.1| phosphate regulon sensor protein [Vibrio fischeri ES114]
 gi|59480695|gb|AAW86482.1| sensory histidine kinase in two-component regulatory system with
           PhoB [Vibrio fischeri ES114]
          Length = 431

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 72/369 (19%), Positives = 146/369 (39%), Gaps = 29/369 (7%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +  ++++   + +     EA  D + +   EG I+  N     L G+   D   +P T  
Sbjct: 87  KKRRKELSGLIRRFRQGAEALPDAVVVFRHEGNIVWCNTLAQSLLGFRWPDDSGQPITNL 146

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
           +                   + Q  +      +      +L I I        Y + + D
Sbjct: 147 IRTPDFVQYL----------MGQHFDFPLDMKSPINSDKTLEIRIAPYSDGE-YLMVVRD 195

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           +S+ KQ +                + +F A VSHE+RTP+T + G+ E+  ++    L  
Sbjct: 196 VSQIKQLEG--------------MRRNFFANVSHELRTPMTVLRGYLEM--SEDPDMLVG 239

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
           P +      +    + +  +V  LL +SKIE+   ++  + V +   +          + 
Sbjct: 240 PMWNRAHGVMTEQLSRMEGLVEQLLTLSKIEAAATSMLEDRVDVPSMLDILEKEAVALSG 299

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
           E+   I  +  +N+ ++  D   ++    N++ NA+  T  G +II+    T +    L+
Sbjct: 300 ERNHKITFNVDHNL-KVKGDEDQLRSAISNLVYNAVKHTTDGAEIIVDWQSTFSG-AELK 357

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V D+G G+    + +  + F ++  ++     G+GLGL + K  +  +  +  I S   K
Sbjct: 358 VTDSGQGIEPQHIPRLTERFYRVDKARSRETGGSGLGLAIVKHALSHHDSQLEIKSKLGK 417

Query: 801 GTLIEIIFP 809
           G+      P
Sbjct: 418 GSTFSFTLP 426


>gi|329925071|ref|ZP_08280015.1| putative heme sensor protein HssS [Paenibacillus sp. HGF5]
 gi|328940190|gb|EGG36522.1| putative heme sensor protein HssS [Paenibacillus sp. HGF5]
          Length = 459

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 58/254 (22%), Positives = 115/254 (45%), Gaps = 8/254 (3%)

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
           +T  D  E  Q  +  S   K   +    + +F++ VSHEI++PL +I GFS+ ++ +R 
Sbjct: 212 VTRRD--ELGQLADHFSQMAKGLAQLEQMRQEFVSNVSHEIQSPLASIQGFSQTLQTKR- 268

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
             L   +   Y + I+     +  +   LL ++ ++  +  L      + E + + +   
Sbjct: 269 --LSEEQQQHYLSIIEAESRRMSQLSKQLLMLASLDKEENILDKSTFDVAEQIKQVLFHT 326

Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
           +     K + I  S       +  D + + Q+  N+++N+I FT   G I +      N 
Sbjct: 327 EWSWRSKDLTIDMSLPPT--YVYGDQQLLHQVWTNLITNSIKFTVPEGAISLRV-IEHNT 383

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
           +  + + DTG+G+    L      F ++  ++      +GLGL + + +V+ + G+  + 
Sbjct: 384 QCRIEISDTGIGIPPEHLPHIFNRFYRVDEARDRSEGSSGLGLSITQKIVELHGGRIEVT 443

Query: 796 STPAKGTLIEIIFP 809
           S P KGT   +I P
Sbjct: 444 SQPGKGTTFTVILP 457


>gi|298251742|ref|ZP_06975545.1| integral membrane sensor signal transduction histidine kinase
           [Ktedonobacter racemifer DSM 44963]
 gi|297546334|gb|EFH80202.1| integral membrane sensor signal transduction histidine kinase
           [Ktedonobacter racemifer DSM 44963]
          Length = 489

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 75/240 (31%), Positives = 126/240 (52%), Gaps = 6/240 (2%)

Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
             +    + + ++ V+HE+R PL  I G+ E++++Q   P       E    +    +L+
Sbjct: 236 LSRSEQLRRNLVSDVAHELRNPLMNIRGYLELLQDQVLEPTP-----ETLASLYEETSLL 290

Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697
             +V DL D+S  E+G+++L  +P+ L +  S+A+ +VQ +  EK++ +  S  +++P I
Sbjct: 291 NRLVADLQDVSLAEAGQLHLTRQPIELADIASQAVQIVQPHLAEKQLTLHVSIPSDLPHI 350

Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757
            AD   V QI  N+LSNAI  TPS G+I ++   +    V + VRDTGVG+    L    
Sbjct: 351 EADQERVAQILRNLLSNAIRHTPSQGEICLAAGLSEAG-VHISVRDTGVGIAPEHLPYLF 409

Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
           + F +   S+     GTGLGL + K +V A+ G+  + S   KGT      P+   +  H
Sbjct: 410 ERFYRADFSRARATGGTGLGLAIVKQVVQAHGGQVSVESQVGKGTCFTFTLPVAALAPAH 469


>gi|253698713|ref|YP_003019902.1| histidine kinase [Geobacter sp. M21]
 gi|251773563|gb|ACT16144.1| histidine kinase [Geobacter sp. M21]
          Length = 588

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 77/249 (30%), Positives = 130/249 (52%), Gaps = 8/249 (3%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           + K    +L  AK+ AE  +  KS FLA +SHEIRTP+  ++G +E++ +       + +
Sbjct: 175 QQKAIIAELREAKEAAEAANRAKSQFLANMSHEIRTPMNGVLGMAELLLHSEL----DEK 230

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
              YA  +  SG  +LDI+ND+L+ISKIE+GK+ +   P  L E    A+ L +     K
Sbjct: 231 QKSYAKMLHHSGESLLDIINDILNISKIEAGKLEIERIPFDLHETARGAVELYREVGRGK 290

Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNE--EVI 738
            + +      ++PR +  D   ++Q+ +N+++N + FT  G  Q+ +S    +     V 
Sbjct: 291 GVAVELQIEEDVPRCVAGDPNRLRQVLINVVNNGLKFTEKGSVQVRVSLVEQNQNGQYVG 350

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
             V+DTG+G+    +      F Q+  S   +  GTGLGL +AK +V+   G+  + S P
Sbjct: 351 FEVKDTGIGIPADSIGAIFDLFAQVDGSTTRKYGGTGLGLAIAKQLVELMGGEIGVESEP 410

Query: 799 AKGTLIEII 807
            +G+    I
Sbjct: 411 GQGSTFTFI 419


>gi|312890874|ref|ZP_07750403.1| histidine kinase [Mucilaginibacter paludis DSM 18603]
 gi|311296657|gb|EFQ73797.1| histidine kinase [Mucilaginibacter paludis DSM 18603]
          Length = 510

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 77/252 (30%), Positives = 132/252 (52%), Gaps = 8/252 (3%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I + K+ + +L  +K IA K +  KS FL+ +SHEIRTP+ A+IGF+ ++          
Sbjct: 111 IDKAKELETQLILSKDIAVKAALTKSQFLSTMSHEIRTPMNAVIGFTHLLLQLS----PR 166

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
           P  +EY   +  S   +L ++ND+LD SKIE+G++       S+ + VS     +   AN
Sbjct: 167 PEQMEYLKLLKFSAENLLVLINDILDFSKIEAGRVEFEEADFSIKDLVSNIRLALLQKAN 226

Query: 681 EKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE--- 736
           EK I ++    +++P ++  D   + QI  N++SNA+ FT  G   I+++ H   ++   
Sbjct: 227 EKNIQLKLLMDHDLPDVVKGDPVRIGQILTNLISNAVKFTKEGKVTIVASLHKKYDDYTI 286

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           V   V DTG+G+   +L+     F Q  +    +  GTGLGL + K +++    +  + S
Sbjct: 287 VDFEVIDTGIGIAANKLDDIFDSFTQAASDTTRKFGGTGLGLTITKRLLELMNSEIKVKS 346

Query: 797 TPAKGTLIEIIF 808
            P KG++     
Sbjct: 347 EPGKGSVFYFSL 358


>gi|159901028|ref|YP_001547275.1| integral membrane sensor signal transduction histidine kinase
           [Herpetosiphon aurantiacus ATCC 23779]
 gi|159894067|gb|ABX07147.1| integral membrane sensor signal transduction histidine kinase
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 386

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 82/259 (31%), Positives = 140/259 (54%), Gaps = 3/259 (1%)

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
           L  ++IS+ KQ +  L  AK+ AE  +  KS FLA +SHE+RTPL AIIG+SE +  +  
Sbjct: 126 LLANEISQRKQIEQSLLAAKEEAELANRSKSQFLAMMSHELRTPLNAIIGYSE-LLQEDA 184

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
                P Y++  + I  +G  +L ++ND+LD+SKIE+G+M L  +     E +++    +
Sbjct: 185 EADQLPNYVQDLSTIRNAGVHLLGLINDVLDLSKIEAGRMELFGQDFRAIELINDLELYI 244

Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
           Q    +    +    A ++  + +DL+ ++QI LN+L+NA  FT  G  I +       +
Sbjct: 245 QPQIAKNNNRLVLDVAKDLGVMHSDLQKLRQILLNLLTNASKFTQQG-TITLR-AKRDGD 302

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            +   V DTG+GM++  +    +PF Q   S   R  GTGLGL +++++     G   + 
Sbjct: 303 WLHFEVVDTGIGMSSEHVANLFQPFVQAEQSTAARFGGTGLGLAISRSLARLLGGDIMVE 362

Query: 796 STPAKGTLIEIIFPLYDTS 814
           S   +G+  ++I P +  +
Sbjct: 363 SVLGQGSNFQLIVPAFQLA 381


>gi|318605169|emb|CBY26667.1| putative Histidine protein kinase sensor [Yersinia enterocolitica
           subsp. palearctica Y11]
          Length = 1185

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 91/383 (23%), Positives = 170/383 (44%), Gaps = 16/383 (4%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK---PF 497
           R     +   + Q  SI+ A    + I    G +   N   +K     + D+L     P 
Sbjct: 505 RRQAALLHARLRQQESIINALPFAVFIRTAAGELAVYNSHFAKAHQDKLNDLLNHNNEPA 564

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-YSL 556
              +       ++ Y   +L+    Q ++   L      +L  + + I  L  +      
Sbjct: 565 NWPMTSPLDREIDKYCRLVLTHRKPQMVD---LSLEINGELRDIFLWIIPLDNAERSLLG 621

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
              DIS+ K  + +L  A+  AE  +  KS FLA +SHE+RTP+ AI+G  E ++ +   
Sbjct: 622 GWLDISQRKTVERQLEAARVEAESANRTKSTFLATISHELRTPMYAIMGLLE-LEIRSEQ 680

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
           P+           + +S   ++ +++D++D +KIE+G++++H   V   + +    ++ Q
Sbjct: 681 PVD----KNTLVTVSKSAQSLMLLLDDIIDSAKIEAGQLSVHPAVVDFRQEIERMFTIYQ 736

Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSN 734
             A+E+ +       N IP  ++ D+  V+Q+  N+L NA+ FT  G   + I+     +
Sbjct: 737 PIADERNLRFSGWVDNQIPDLVMVDMLRVRQVMGNLLGNALKFTEQGSVSVDITWEAIDD 796

Query: 735 EEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
           +  +  + + DTG+G++        +PF Q       R  G+GLGL +   ++    G+ 
Sbjct: 797 KHGVTNIDITDTGIGISPAAQATLFQPFSQANEGNSPRFGGSGLGLWICHQLIHKMGGEI 856

Query: 793 YIFSTPAKGTLIEIIFPLYDTSH 815
            + S   KGT + I  PL   S 
Sbjct: 857 TLESQLGKGTSLFITLPLEVASA 879


>gi|300813035|ref|ZP_07093418.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|300496005|gb|EFK31144.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
          Length = 552

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 80/366 (21%), Positives = 159/366 (43%), Gaps = 40/366 (10%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            ++     +L ++ +A  +G+ +I+ +  IL +N AV  L G    D L       +++N
Sbjct: 215 EQLHHREKELKTVTDAMLEGLILIDLDDQILLSNPAVVSLLGLHDTDPLPDDVKEIIDKN 274

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISE 563
           +       +                    +  + + +              S+ + D++E
Sbjct: 275 SRLAHAEGI------------------VERNGRNIQISASPITSRKILKGTSILVVDVTE 316

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
              E+                + +F A VSHE++TPL +I+G +E+++N     +     
Sbjct: 317 EYHEEQV--------------RREFTANVSHELKTPLQSIMGSAELLENHL---VKEEDR 359

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
             +   I  S   +L +++D++ +S ++  +       ++L   V+EA+  +Q  A+   
Sbjct: 360 DSFYKKIHESSAQLLTLIDDIIRLSHLDENQ-RFEEIKLNLKSPVTEALEALQSSADRHG 418

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
           I + T+ ++    ILA+ R V +IA N++ N+I +    G+  I+       + IL+V D
Sbjct: 419 IKLETNLSDT--MILANFRLVYEIAYNLIDNSIRYNKEKGKTKITVK-EHRGQAILQVTD 475

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TG+G+      +  + F ++  S   +  GTGLGL + K  V    G   + S   KG+ 
Sbjct: 476 TGIGIPQEAQNRIFERFYRVDKSHSRKTGGTGLGLSIVKHAVQQCHGTIRLESELGKGST 535

Query: 804 IEIIFP 809
             +IFP
Sbjct: 536 FTVIFP 541


>gi|86360451|ref|YP_472339.1| two-component sensor histidine kinase protein [Rhizobium etli CFN
           42]
 gi|86284553|gb|ABC93612.1| probable two-component sensor histidine kinase protein [Rhizobium
           etli CFN 42]
          Length = 702

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 83/600 (13%), Positives = 199/600 (33%), Gaps = 50/600 (8%)

Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
             D      ++  + + +++   +      + +            ++      +      
Sbjct: 122 PDDTSRLASEWHEIMASKNAREVEGRLRRADGHYRWCTLRQKPRFDSDGNVVRWYGVVLD 181

Query: 309 PSLSAYFD-----------EGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKS 356
                  +             E      ++  P+  +     G+  + N S+L     + 
Sbjct: 182 IEDRKQAENALKETKTALAASEENLSLIINSLPVLVWSARPDGSADFVNQSWLDYAG-RP 240

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
            D I   G L           ++    V +++ D      +     I+    N     F 
Sbjct: 241 ADQILEWGFLD------LYHPDDIPGMVAIWKRDLEHSDHTVLKGRIRGADGNYRWFYFS 294

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINK-------RKMEIEVMQLCSILEATSDGIAIIN 469
             +  +     +   G   +  D +  +         +     +L  I+           
Sbjct: 295 GRKLIDANG-VVRWFGCNIDIEDLQAAENALRESETALRESEHKLSLIINTIPAMAWSCT 353

Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
            +G +   NR +    G PVE+I+   F      +    M     +I++    + ++   
Sbjct: 354 PDGRLEYFNRNLIDYVGLPVEEIVGFGFYRMFHPDDVEPMRVAWDDIVATKKSRPVDARI 413

Query: 530 LGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESS--HK 585
             +  E +  +LR         +   +   + DI + K+ +  L  ++      +     
Sbjct: 414 RRADGEYRWFNLRQSPLLDRDGNVVRWYGVVVDIEDRKRAEESLRQSQSNLAHVTRMTAT 473

Query: 586 SDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
            +    ++HE+  PL AI+  +   ++  + G     +    A  I + G+   DI+  +
Sbjct: 474 GELAVSIAHEVNQPLMAIVTNAGTCLRWLQPGHTDIEQARLAAERIVKDGHRAGDIIASI 533

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704
               +  + K     E   L  A+   + L++     + I +          ++AD   +
Sbjct: 534 ----RAMAQKSPARMEQTDLKGALHHVLDLLRGELRHRDIELDLDLPQRSLEVIADRTQL 589

Query: 705 KQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761
           +Q+ LN++ N+     +     +I I      ++ V + V DTG G+++  L++  + F 
Sbjct: 590 QQVVLNLVMNSAEAMAASSGDRRIGIRCAEDEHQFVKVSVSDTGRGISSDALDRVFETFY 649

Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI---FSTPAKGTLIEIIFPLYDTSHPHD 818
                      G G+GL + +++V+A+ G+ +     S    G +     P+ + +   D
Sbjct: 650 STKAD------GIGMGLSICRSIVEAHGGRIWASATDSQV--GAVFTFTLPMAEVTAADD 701



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 54/537 (10%), Positives = 122/537 (22%), Gaps = 53/537 (9%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            W+  + G L   ++     IG    ++ G R   +               +        
Sbjct: 84  VWSATSDGMLDFANQHFLDFIGAPLEQISGERFYGIFHPDDTSRLASEWHEIMASKNARE 143

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR-------ALGK 198
                     +      L   P +  +      R +G+V                     
Sbjct: 144 VEGRLRRADGHYR-WCTLRQKPRFDSDGNVV--RWYGVVLDIEDRKQAENALKETKTALA 200

Query: 199 RLDKKFSHLHEIKKGHSSVEKEK--YDIFSQQSPPPHLRMKNKV--SSLTEYYAHKDDVL 254
             ++  S +           +     D  +Q       R  +++      + Y   D   
Sbjct: 201 ASEENLSLIINSLPVLVWSARPDGSADFVNQSWLDYAGRPADQILEWGFLDLYHPDDIPG 260

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF----------EYLS 304
               +            +      + N          L + +                 +
Sbjct: 261 MVAIWKRDLEHSDHTVLKGRIRGADGNYRWFYFSGRKLIDANGVVRWFGCNIDIEDLQAA 320

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIA 363
                       E E+     ++  P   +  +  G L Y N + +       V++I   
Sbjct: 321 ENALRESETALRESEHKLSLIINTIPAMAWSCTPDGRLEYFNRNLIDYVGL-PVEEIVGF 379

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
           G               A   ++  +  R      AR   I+                 ++
Sbjct: 380 GFYRMFHPDDVEPMRVAWDDIVATKKSR---PVDAR---IRRADGEYRWFNLRQSPLLDR 433

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII------LST 477
               +   G+  +  D +  +  +      L  +   T+ G   ++    +      + T
Sbjct: 434 DGNVVRWYGVVVDIEDRKRAEESLRQSQSNLAHVTRMTATGELAVSIAHEVNQPLMAIVT 493

Query: 478 NRAVS-KLFGYPVEDILRKPFTVFLEQNTPSVMNHYL-----------TEILSLDLRQTL 525
           N     +       DI +                  +             +   DL+  L
Sbjct: 494 NAGTCLRWLQPGHTDIEQARLAAERIVKDGHRAGDIIASIRAMAQKSPARMEQTDLKGAL 553

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES 582
             +      E +   + +    L         + D ++ +Q    L      A   S
Sbjct: 554 HHVLDLLRGELRHRDIELD---LDLPQRSLEVIADRTQLQQVVLNLVMNSAEAMAAS 607



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 43/134 (32%), Gaps = 6/134 (4%)

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           I++     +     +G++   N+      G P+E I  + F      +  S +     EI
Sbjct: 76  IIDLIPAMVWSATSDGMLDFANQHFLDFIGAPLEQISGERFYGIFHPDDTSRLASEWHEI 135

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLS 572
           ++    +  E        +       +  K    S      +   + DI + KQ +N L 
Sbjct: 136 MASKNAR--EVEGRLRRADGHYRWCTLRQKPRFDSDGNVVRWYGVVLDIEDRKQAENALK 193

Query: 573 HAKKIAEKESSHKS 586
             K        + S
Sbjct: 194 ETKTALAASEENLS 207


>gi|33865087|ref|NP_896646.1| two-component sensor histidine kinase [Synechococcus sp. WH 8102]
 gi|33638771|emb|CAE07066.1| two-component sensor histidine kinase [Synechococcus sp. WH 8102]
          Length = 680

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 76/395 (19%), Positives = 167/395 (42%), Gaps = 44/395 (11%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            ++    ++  S++   +DG  +++ +G I+  N    +LF +    +  +     L   
Sbjct: 287 EELTAAQVKQQSLIATMADGAILLDEQGRIVLANPTARRLFRWEGRKLEGQELVAELPDL 346

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDI 561
               +   L  +L         + ++G     + L + +   +          ++T+ D+
Sbjct: 347 LAIELQAPLDLLLISGADSEDLRCSVGEPS--RTLRIVMQAVRDASGESLKGIAVTVQDL 404

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           +                 + ++ +S F++ VSHE+RTPL  I  + E + +     L   
Sbjct: 405 TR--------------EVELNAAQSRFISNVSHELRTPLFNIKSYVETLHD-LGDQLSPE 449

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
            + E+    +   + +  +VND+LD+S++ESG+  + FE ++L  A+ + +   +L A++
Sbjct: 450 EHKEFLGVANDETDRLTRLVNDVLDLSRLESGR-AVQFEAMNLLPAMEQTLRAYRLNADD 508

Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE------ 735
           K + +      ++P +L +   + Q+  N++ NA+ F+ SGG + +      +       
Sbjct: 509 KHVKLELDAPEDLPEVLGNWDLLLQVLDNLVGNALKFSRSGGTLALRAYPWPDTCPVGSP 568

Query: 736 ----------------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
                            + + V DTG G++  + E+    F ++ N+      GTGLGL 
Sbjct: 569 NDEQAGPSCALSSPLPRLRVEVADTGCGISAADQERIFDRFFRVENAVHTEV-GTGLGLS 627

Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           + + +++ +  K  + S P  GT      PL    
Sbjct: 628 IVRGILEKHGTKVSMASEPEVGTTFWFDLPLGQAD 662


>gi|186681478|ref|YP_001864674.1| GAF sensor signal transduction histidine kinase [Nostoc punctiforme
           PCC 73102]
 gi|186463930|gb|ACC79731.1| GAF sensor signal transduction histidine kinase [Nostoc punctiforme
           PCC 73102]
          Length = 683

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 82/263 (31%), Positives = 133/263 (50%), Gaps = 12/263 (4%)

Query: 557 TMHDISEWKQEKNKLSHAKK--------IAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
            M  +++ KQ   +    +          AE  +  +S+FLA +SHE+ TPLT +IG S 
Sbjct: 415 LMQTLTQEKQTLEQRVIERTIGLRDALLAAEAANRLRSEFLATISHELLTPLTYVIGMSS 474

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
            +     G L   R  +Y   I  SG  +L+++ND+LD+S+IE+GK  L+    SL    
Sbjct: 475 TLLRWPLGELS-QRQRDYLQTIHDSGEHLLEMINDILDLSQIEAGKTALNISEFSLVNVA 533

Query: 669 SEAISLVQLYANEKRILIRTSF--ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726
            +A+  ++  A  ++I +        +  R  AD   V QI  N+L+NAI FTP  G + 
Sbjct: 534 EKALESLRNKATSEQINLNLDLQIDPSRDRFTADAERVAQILSNLLTNAIKFTPESGNVT 593

Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
           +      +   I +V DTG+G+   +L    + F Q+    + R EGTGLGL L K +V+
Sbjct: 594 LRLWVEDD-TAIFQVEDTGIGIREEQLPLLFEKFQQLDTPYRRRYEGTGLGLALTKQLVE 652

Query: 787 ANMGKFYIFSTPAKGTLIEIIFP 809
            + G+  + ST + G++  +  P
Sbjct: 653 LHRGRIEVESTISIGSIFTVWIP 675


>gi|268610406|ref|ZP_06144133.1| PAS/PAC sensor signal transduction histidine kinase [Ruminococcus
           flavefaciens FD-1]
          Length = 553

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 79/365 (21%), Positives = 154/365 (42%), Gaps = 29/365 (7%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           ++     Q   I+ + S+GI I +++  +++ N A + L G          + +   +  
Sbjct: 217 ELRTNQDQFELIMGSMSEGIIIADQKLNVVAQNTAAAGLLGSSSFRTGHSIYALNNSEGF 276

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
              +   L    S           +  T       +    + +      ++ + DI+E +
Sbjct: 277 RRCLLDALGGRRS---------ECIIHTGNGDREIIASPARSMEMVCGVAVFIMDITEKQ 327

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + +                + +F A VSHE++TPLT I G S+++     G +       
Sbjct: 328 KLET--------------MRREFTANVSHELKTPLTTIYGISDMLAG---GIVKAEDVAG 370

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           +   I      ++ +V D + +SK++ G +    E V L   V E +S ++L A EK + 
Sbjct: 371 FGENIRSEAERLISLVTDTIALSKLDEGTVIGEKETVELIPFVEEILSRLELAAAEKGVS 430

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
             TS +     I  +   + +   NI  N I +   GG + +  +    + V++ V+DTG
Sbjct: 431 --TSVSGENISIKCERLLLSETLYNICDNGIKYNKQGGSLEVIIS-EKKKHVLITVKDTG 487

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+ + + ++  + F +   S+  + +GTGLGL + K  V    G   + STP +GT   
Sbjct: 488 IGIPHEQQDRIFERFYRGDKSRSGKIKGTGLGLSIVKHSVMRMGGNIRVESTPDRGTTFT 547

Query: 806 IIFPL 810
           I  P+
Sbjct: 548 IELPV 552


>gi|320104460|ref|YP_004180051.1| multi-sensor hybrid histidine kinase [Isosphaera pallida ATCC
           43644]
 gi|319751742|gb|ADV63502.1| multi-sensor hybrid histidine kinase [Isosphaera pallida ATCC
           43644]
          Length = 976

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 83/272 (30%), Positives = 141/272 (51%), Gaps = 15/272 (5%)

Query: 559 HDIS--EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            D+S  E  +       A   A++ +  KS FLA +SHEIRTPLT I+G++E++ +Q   
Sbjct: 506 RDLSLAETCRTWISQRIASLRADEANRSKSSFLASMSHEIRTPLTLILGYTEMLMDQETE 565

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
           P       E    +  +G  +L ++ND+LD+SKIE+GK+   FEPV   + + + +   Q
Sbjct: 566 PWKT----EALRVVRHNGEYLLALLNDILDLSKIEAGKLETRFEPVDPFDLLRDVVDPFQ 621

Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTS- 733
             A  K + +  + A  +PR ++ D   V+Q+ +N++ NA+ FT  G  +++ S      
Sbjct: 622 PRARAKGLRLELTCATPLPRRVVTDPVRVRQVLVNLIGNALKFTDQGSVRVVASAEWEPT 681

Query: 734 ---NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
                 + + V DTG+GMT  ++ +  +PF Q+  S   R EGTGLGL +++ +     G
Sbjct: 682 TGSARWIEIAVHDTGIGMTPEQMSRLFRPFEQVDPSLTRRHEGTGLGLAISRRLARMLGG 741

Query: 791 KFYIFSTPAKGTLIEIIF---PLYDTSHPHDC 819
              + S   +G++    F   P  D + P+  
Sbjct: 742 NITVESVAGQGSVFRFRFTPEPESDLALPNPA 773


>gi|91976178|ref|YP_568837.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisB5]
 gi|91682634|gb|ABE38936.1| cell cycle control histidine kinase CckA [Rhodopseudomonas
           palustris BisB5]
          Length = 850

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 114/680 (16%), Positives = 226/680 (33%), Gaps = 46/680 (6%)

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFR-GFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK- 211
           G     P  L  L + +    F  F    GIV       D   L    +  F  +     
Sbjct: 44  GRADAQPYILGLLALLAMVGLFMLFAFAAGIVGFADRAADDPVLRAIAEGAFDGIAVTDP 103

Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271
           +GH       Y   +  +    +R   +V       +     L          +E     
Sbjct: 104 RGHVVYANSAYLALTGAATMQDVRPVERVFIGNPDVSEAVFRLLKAAREGKRLQEEVRVA 163

Query: 272 QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI 331
             D       +   +      +   +  +                +      E +D  P 
Sbjct: 164 GADGAQGRWMRMRVRPLGPGKREARQTVWSLADITRDREHQEDVFQELQHAIEYLDHAPC 223

Query: 332 PFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390
            FF V + GNL Y N +      +   +      G   L     +S + A     +    
Sbjct: 224 GFFSVNADGNLVYVNATLANWLDHDLAEI-----GSGGLKLGDIVSGDGAALLTSIVPEP 278

Query: 391 RTCIAASARLHTIQWNRENS-LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449
                    +     N +   + +       A+  P       I     +    +R  EI
Sbjct: 279 GEVKTEVFDIDLKMRNGKTMPVRLYHKLAFGADGAPGASRTLVISRARDERLDPQRAAEI 338

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG-YPVEDILRKPFTVFLEQNTPSV 508
             M+     + T   IA +++ G+++  N   +KL           K     +     + 
Sbjct: 339 RFMRF---FDHTPMAIATVDKSGVVVRANARFAKLAQSLDPTGAAAKSILAAVNIRDRNT 395

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT-MHDISEWKQE 567
           +   + +  +           +    +E+     +        +  ++  + + +E +  
Sbjct: 396 LGGAIDQA-AQGQADIAPVEVMLDGAKERWGQFFVTAVADDGDAEAAIVYLLETTERRAL 454

Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
           +N+++ A+K+              ++H+    L+AI+  ++ + N       +P + +  
Sbjct: 455 ENQVNQAQKMDT-----IGQLAGGIAHDFNNVLSAIMMANDFLLNAH--KPTDPSFQDIM 507

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
             I ++      +V  LL  S+    K  L  + + L EA+++   L++    EK + + 
Sbjct: 508 Q-IKQNATRAATLVRQLLAFSR----KQTLRPQVLDLREALTDIDRLLKRLIGEK-VTLT 561

Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST--------------THTS 733
                ++ R+ AD+   +Q+ +N+  NA    P GG++ I T                 +
Sbjct: 562 MPHGRDLWRVKADVSQFEQVIVNLAVNARDAMPDGGKLTIRTCNVTAADAAQLAHKGMPA 621

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
            + V + V DTG G+    ++K  +PF     S +  G+GTGLGL     ++    G  Y
Sbjct: 622 ADYVRIDVSDTGTGIPADIVDKIFEPFF----STKEVGKGTGLGLSTVYGIIKQTGGFVY 677

Query: 794 IFSTPAKGTLIEIIFPLYDT 813
           + S P KGT  +I  P +D 
Sbjct: 678 VDSEPGKGTTFQIFLPRHDA 697



 Score = 55.0 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 45/379 (11%), Positives = 99/379 (26%), Gaps = 22/379 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL--KRQNTWYGK 146
            D  G++   +       G  A  M  +R  +   I + D +  +  LL   R+     +
Sbjct: 101 TDPRGHVVYANSAYLALTG--AATMQDVRPVERVFIGNPDVSEAVFRLLKAAREGKRLQE 158

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                         + +   P+    RE      + +  + R       + + L     +
Sbjct: 159 EVRVAGADGAQGRWMRMRVRPLGPGKREARQTV-WSLADITRDREHQEDVFQELQHAIEY 217

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPP-----PHLRMKNKVSSLTEYYAHKDDVLKTE--KY 259
           L     G  SV  +   ++   +           + +    L +  +     L T     
Sbjct: 218 LDHAPCGFFSVNADGNLVYVNATLANWLDHDLAEIGSGGLKLGDIVSGDGAALLTSIVPE 277

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
           P     E    + +  +   +      +           S   +  R            E
Sbjct: 278 PGEVKTEVFDIDLKMRNGKTMPVRLYHKLAFGADGAPGASRTLVISRARDERLDPQRAAE 337

Query: 320 NLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
                  D  P+    V   G +  AN  F  L +            L+ +    + +  
Sbjct: 338 IRFMRFFDHTPMAIATVDKSGVVVRANARFAKLAQSLDPTGAAAKSILAAVNIRDRNTLG 397

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
            AI      ++D            +  +        F     A+   +         E  
Sbjct: 398 GAIDQAAQGQAD--IAPVE-----VMLDGAKERWGQFFVTAVAD-DGDAEAAIVYLLETT 449

Query: 439 DTRINKRKMEIEVMQLCSI 457
           + R  + ++  +  ++ +I
Sbjct: 450 ERRALENQV-NQAQKMDTI 467


>gi|91783786|ref|YP_558992.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia xenovorans
           LB400]
 gi|91687740|gb|ABE30940.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia xenovorans
           LB400]
          Length = 657

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 86/541 (15%), Positives = 178/541 (32%), Gaps = 45/541 (8%)

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI--PFFVYSHGNLFYANPSFLLLT 352
           +   + + +   N P+ +      +      +        F + + G +   N   L   
Sbjct: 5   DVPSAGQNVEPANVPAPTRMNPAADVDYWALMQAIEDYAIFLLDATGRIVSCNTGALKQA 64

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
            Y   + I      S       ++ +     +                  ++ N     +
Sbjct: 65  GYTEREIIGQ--HFSCFYTEDAVARDWPAYELQQASLTGR---FEDEGWRVRKNGTTFWS 119

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINRE 471
              +     N          I  +    R     +     +   ++++  D  I +++ +
Sbjct: 120 -NVVITAIRNDAGILTGFAKITRDLTARRDYLEALRQSEERFRLLVDSVKDYAIFMLDPQ 178

Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
           G ++S N   +++ GY  E+I+ + F+ F      +       E+        +E     
Sbjct: 179 GNVVSWNEGAARIKGYTREEIVGRHFSTFYPPEDAAAGKPA-RELAIARQIGHVEDEGWR 237

Query: 532 STKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
             K+       + I  +   S     ++    D++            ++  E+       
Sbjct: 238 VRKDGTTFWANVNITAVYDESKRLCGFAKVTRDLT--------ERRQREELERSGERMRQ 289

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           FLA ++HE+R PL  +     V++ +        R  +    IDR    +  +V+DLLD+
Sbjct: 290 FLATLAHELRNPLAPVRNAIGVMQLETGISPTLARSRDL---IDRQVTHLTRLVDDLLDV 346

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707
            +I S K+ L    V L E V+  I   + + +     +          +  D+  + Q+
Sbjct: 347 GRIMSNKVELRVGRVDLAEVVARGIEAARPFTDAHEQRVVAHMPLEPISVRGDMTRLVQV 406

Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS- 766
             N+L NA  F+P G  + I          +L VRD G G+    L++    F Q   + 
Sbjct: 407 LQNLLHNASKFSPVGSVVDI-VARIDFHMAVLEVRDAGCGIALRSLDRIFDLFAQEKEAQ 465

Query: 767 -------QQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFPLYDTSHPHD 818
                                 K++V+ + G     S  P  G+   +  PL   + P +
Sbjct: 466 TIGEGGLGIGLTL--------CKSLVEMHGGSIVASSEGPGSGSTFTLSLPL--AAAPSN 515

Query: 819 C 819
            
Sbjct: 516 A 516



 Score = 68.5 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 26/297 (8%), Positives = 73/297 (24%), Gaps = 8/297 (2%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + +D  G +   +E   +  G    +++G                   +L   +   + 
Sbjct: 172 IFMLDPQGNVVSWNEGAARIKGYTREEIVGRHFSTFYPPEDAAAGKPARELAIARQIGHV 231

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRAL----GKRLD 201
           +   W +         ++    +Y  ++   GF    +            L     +   
Sbjct: 232 EDEGWRVRKDGTTFWANVNITAVYDESKRLCGFAK--VTRDLTERRQREELERSGERMRQ 289

Query: 202 KKFSHLHEIKKGHSSVEKEKYDI-FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
              +  HE++   + V      +       P   R ++ +     +     D L      
Sbjct: 290 FLATLAHELRNPLAPVRNAIGVMQLETGISPTLARSRDLIDRQVTHLTRLVDDLLDVGRI 349

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
           +    E  +   +    +       + +    +                 ++      +N
Sbjct: 350 MSNKVELRVGRVDLAEVVARGIEAARPFTDAHEQRVVAHMPLEPISVRGDMTRLVQVLQN 409

Query: 321 LTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
           L        P+   V     + +   + L +        +     +  L    K + 
Sbjct: 410 LLHNASKFSPVGSVVDIVARIDFH-MAVLEVRDAGCGIALRSLDRIFDLFAQEKEAQ 465



 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/404 (9%), Positives = 104/404 (25%), Gaps = 10/404 (2%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + +DA G +   +    K  G    ++IG           +  +    +L +   T   
Sbjct: 44  IFLLDATGRIVSCNTGALKQAGYTEREIIGQHFSCFYTEDAVARDWPAYELQQASLTGRF 103

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +   W +         ++    I +     +GF    I        D     ++ +++F 
Sbjct: 104 EDEGWRVRKNGTTFWSNVVITAIRNDAGILTGFAK--ITRDLTARRDYLEALRQSEERFR 161

Query: 206 HLHEIKKGHS-SVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEKYPLL 262
            L +  K ++  +   + ++ S       ++   + ++        +  +     K    
Sbjct: 162 LLVDSVKDYAIFMLDPQGNVVSWNEGAARIKGYTREEIVGRHFSTFYPPEDAAAGKPARE 221

Query: 263 TSEESSLPEQEDFHTI---NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
            +    +   ED       +   +        + + SK    +       +     +E E
Sbjct: 222 LAIARQIGHVEDEGWRVRKDGTTFWANVNITAVYDESKRLCGFAKVTRDLTERRQREELE 281

Query: 320 NLTPETVDKCPIPFFVYSHGNLFYANP-SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
                             +      N    + L    S         +   +       +
Sbjct: 282 RSGERMRQFLATLAHELRNPLAPVRNAIGVMQLETGISPTLARSRDLIDRQVTHLTRLVD 341

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
           + +    +  +          L  +      +        E+       +    +  +  
Sbjct: 342 DLLDVGRIMSNKVELRVGRVDLAEVVARGIEAARPFTDAHEQRVVAHMPLEPISVRGDMT 401

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
                 + +     +  S + +  D +A I+    +L    A  
Sbjct: 402 RLVQVLQNLLHNASKF-SPVGSVVDIVARIDFHMAVLEVRDAGC 444


>gi|77463472|ref|YP_352976.1| two-component sensor histidine kinase [Rhodobacter sphaeroides
           2.4.1]
 gi|77387890|gb|ABA79075.1| Probable two-component sensor histidine kinase [Rhodobacter
           sphaeroides 2.4.1]
          Length = 346

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 79/362 (21%), Positives = 147/362 (40%), Gaps = 29/362 (8%)

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
            +LE     + +I  +  I + N    +LFG             ++       +   +  
Sbjct: 8   QLLEGVPLPLVLIGPDERIRAANAPAQRLFGAASVA------RHYVMAMRQPALLDAIEG 61

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575
            + LD       I  G ++E       +   ++   SC      DI+E +Q         
Sbjct: 62  AIRLDRPGRARYIITGPSREVTY-RATVTPVRIHGESCALCAFEDITEQEQM-------- 112

Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
                  + + DF+A VSHE+RTPLTA++GF E ++              +   + R   
Sbjct: 113 ------GAIRRDFVANVSHELRTPLTALLGFIETLQGAARD--DPAARSRFLGIMAREAG 164

Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695
            +  +V DLL +S++ES +      PV +   + +AI+ ++  A    + I+        
Sbjct: 165 RMNRLVQDLLSLSRVESEERVRPKTPVDVTAVIGQAIAALRPMAEAAGVEIQRQGEAGPI 224

Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE------EVILRVRDTGVGMT 749
            +  D   + Q+  N++ NA+ +  SG  + +  +  +         V + V D G G+ 
Sbjct: 225 LLPGDPDQLTQVFHNLIENAVKYGASGKLVTVGISRDAEGLARLGPAVRIEVVDRGEGID 284

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
              L +  + F ++ N +     GTGLGL + K +V+ + G+F I S   +G+   +  P
Sbjct: 285 AIHLPRLTERFYRVDNHRSREKGGTGLGLAIVKHIVNRHRGRFLIESELGQGSRFIVTLP 344

Query: 810 LY 811
           L 
Sbjct: 345 LA 346


>gi|254242634|ref|ZP_04935956.1| hypothetical protein PA2G_03393 [Pseudomonas aeruginosa 2192]
 gi|126196012|gb|EAZ60075.1| hypothetical protein PA2G_03393 [Pseudomonas aeruginosa 2192]
          Length = 1212

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 108/604 (17%), Positives = 228/604 (37%), Gaps = 26/604 (4%)

Query: 225 FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYT 284
              Q  P       ++  L    A    + ++ K   +     S            +   
Sbjct: 336 LHFQVTPRSGGFPEQIGVLARKEADLAIMSRSSKREEMLRFTRSFLSTSYVLVTRADDKG 395

Query: 285 KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY- 343
           + +  G+L                     Y           +D   +  +          
Sbjct: 396 RAESPGSLDGKRIAIPAG-HVGMQQVRERYPQASMVEVGVALDAMNL-VYEGRADAAVVP 453

Query: 344 -ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT 402
                + ++  ++    I     +        +   +A    +L ++  +          
Sbjct: 454 LVTARYYIVRLFRERLAIADLVPIGAATAHFAVRRGDAELQSILDKALLSISPDDLSDIV 513

Query: 403 IQWNRENS----LAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN-------KRKMEIEV 451
            +W           + +I                        R         ++ +  ++
Sbjct: 514 NRWRSPPGMSGQTWVDYILVITEILAIAAALLLLCLGWVTYQRRQIRVRARVEQALSDQL 573

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
             + ++ +     + + +  G +LS NR+  +  G   E+++ +       +N  +    
Sbjct: 574 RFVEALTDCMPPPLYVRDVNGRMLSCNRSYLQSVGLSSEEVMNRTVLELPMENFETAPEF 633

Query: 512 YLTEILSLDLRQTLEKIT-LGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEK 568
           + + ++++   +T+E +  +     E+ +   I   +              DI+E +Q  
Sbjct: 634 HRSYLMAMREGRTIEAVYPVALGGRERWIDHWIQPFRDSSGTIRGVICGWLDITEHRQLI 693

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
           ++L  AK +A++ S  K+ FLA +SHEIRTP+ A+IG  E+   +      +        
Sbjct: 694 DELEEAKNLADEASRAKTTFLATMSHEIRTPMNAVIGILELALKRAETGRVD---RSSIE 750

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
               S   +L+++ D+LDI++IESG+++L  +  +L E V     + +  A +KR+ +  
Sbjct: 751 IAYASAKSLLELIGDILDIARIESGRLSLSPKRANLRELVESVARVFEGLARQKRLSLVL 810

Query: 689 SFANNI-PRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNE--EVILRVRDT 744
              ++I   +L D    KQI  N++SNAI FT  G  +I I          +V L V DT
Sbjct: 811 EIDSSINGDVLLDAMRFKQILSNLVSNAIKFTDEGSIRIRIDGRQVEPSLLQVNLCVEDT 870

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G++  + ++  +PF Q+  + Q   EGTGLGL +++++ +   G+  + S   +GT I
Sbjct: 871 GIGISLGDQQQLFRPFAQVNRNLQ-NTEGTGLGLVISRSLCEMMGGRLVMSSELGQGTRI 929

Query: 805 EIIF 808
           ++  
Sbjct: 930 DVEL 933



 Score = 47.7 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 64/243 (26%), Gaps = 11/243 (4%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D +G +   +    +++G  + +++   + ++               L           +
Sbjct: 591 DVNGRMLSCNRSYLQSVGLSSEEVMNRTVLELPMENFETAPEFHRSYLMAMREGRTIEAV 650

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFR-GFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           +P+        ID    P    +    G   G+  +  +R   D     K L  + S   
Sbjct: 651 YPVALGGRERWIDHWIQPFRDSSGTIRGVICGWLDITEHRQLIDELEEAKNLADEASRAK 710

Query: 209 EIKKGHSSVE--KEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
                  S E       +              +V   +   A+       E    +    
Sbjct: 711 TTFLATMSHEIRTPMNAVIGILELALKRAETGRVDRSSIEIAYASAKSLLELIGDILDIA 770

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
                +       L+   K+     L  +    FE L+ +   SL    D   N     +
Sbjct: 771 RIESGR-------LSLSPKRANLRELVESVARVFEGLARQKRLSLVLEIDSSING-DVLL 822

Query: 327 DKC 329
           D  
Sbjct: 823 DAM 825


>gi|153808637|ref|ZP_01961305.1| hypothetical protein BACCAC_02935 [Bacteroides caccae ATCC 43185]
 gi|149128959|gb|EDM20176.1| hypothetical protein BACCAC_02935 [Bacteroides caccae ATCC 43185]
          Length = 869

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 97/539 (17%), Positives = 186/539 (34%), Gaps = 39/539 (7%)

Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANP 346
               ++ N +E+   +  +    +     E  N               Y    ++ + N 
Sbjct: 349 IVWLIRVNRREAKRRVQVQTRLLVQNKMVEQRNEFDNIFHSIRDGVITYDTDLHIHFTNR 408

Query: 347 SFLLLTKYKSV--DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
           S L +          +       ++        +   K +         +         +
Sbjct: 409 SLLQMLHLPFDIGGRVYEGMMAGSIFKVYHNGQDILHKMLKEVAKTGKSVMIPQGAFMKE 468

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD- 463
            + +    ++       ++            E     ++ R +  E MQ     +   D 
Sbjct: 469 VHSDKYFPVSGEIVPIFSRE-----------EITGMALSARNISDEEMQKR-FFDMAVDE 516

Query: 464 -GI--AIINREGIILSTNRAVSKLFGYPVE--DILRKPFTVFLEQNTPSVMNHYLTEILS 518
             I     + E       +      GY      I RK     +  +    +     + LS
Sbjct: 517 SAIYPWQFDMETNCFIFPQGFLVRLGYDEAVTTISRKEMDRTIHPDDIKEIRVLFDKALS 576

Query: 519 LDLRQT-LEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHA 574
            +   T L         E +    R  I                  I  +K  + ++  A
Sbjct: 577 GEEESTRLNFRQRNVKGEYEWWEYRSSIVTGLTQDSLYNILGVCQSIQRYKTAEQEMREA 636

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
           +  A +    KS FLA +SHEIRTPL AI+GFS+++ +            ++   I+++ 
Sbjct: 637 RDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDT--SNFTEEEVTQFIATINKNC 694

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NN 693
            L+L ++ND+LD+S+IESG M   F   +L   +       +L      + +       +
Sbjct: 695 GLLLALINDILDLSRIESGTMEFMFAEHNLPLLLKTVHDSQRLNMPA-GVELVLRMPAGD 753

Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN---EEVILRVRDTGVGMTN 750
              +  D   ++Q+  N+++NA  FT SG    I+  +  +       + V DTGVG++ 
Sbjct: 754 KKYLTTDNVRLQQVVNNLINNAAKFTGSG---FITFGYEEDEEPGYTRIFVEDTGVGISE 810

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             +    + F ++ N      +G GLGL + + +V+   G   + S   KGT   +  P
Sbjct: 811 EGIRHIFERFYKVDNFT----QGAGLGLSICQTIVERLKGTISVTSEVGKGTRFTVRLP 865


>gi|114776327|ref|ZP_01451372.1| sensory transduction histidine kinase [Mariprofundus ferrooxydans
           PV-1]
 gi|114553157|gb|EAU55555.1| sensory transduction histidine kinase [Mariprofundus ferrooxydans
           PV-1]
          Length = 1180

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 84/252 (33%), Positives = 128/252 (50%), Gaps = 6/252 (2%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
             +  + +L    +   + S  K+ FLA  SHE+RTPL AIIGFSE++ N R GPL N +
Sbjct: 468 RLRAREVELEIINEELVQASEAKNQFLANTSHELRTPLNAIIGFSELMGNPRMGPL-NSK 526

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
              Y   I  SG  +L I+NDLLDIS+IE+G M +  +     E  ++ ++ +   A+ K
Sbjct: 527 QHRYVENIHSSGKRLLKIINDLLDISRIEAGMMVVEEQVFPPREVANQVMAEMTSLASLK 586

Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIS----TTHTSNEEV 737
            + +      +  + I  D   + Q+ +N++ NAI FTP GG + +S           E+
Sbjct: 587 GLKLTMDACPDEGQLIRTDRGKLHQMMVNLVGNAIKFTPEGGSVTLSMEINVVSARQREL 646

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
           ++ V+D G+G+   +LEK  +PF Q+        EGTGLGL L +  V    G     S 
Sbjct: 647 VVHVKDNGIGIPAADLEKIFEPFVQVHGGLARAYEGTGLGLALTRRQVRMLGGDVSGESR 706

Query: 798 PAKGTLIEIIFP 809
              G+   I  P
Sbjct: 707 EGDGSTFIIRLP 718


>gi|90022762|ref|YP_528589.1| putative periplasmic ligand-binding sensor protein [Saccharophagus
            degradans 2-40]
 gi|89952362|gb|ABD82377.1| ATP-binding region, ATPase-like protein [Saccharophagus degradans
            2-40]
          Length = 1653

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 66/254 (25%), Positives = 116/254 (45%), Gaps = 9/254 (3%)

Query: 559  HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
              I E    +  L  AK  AE  +  KS+FLA +SHEIRTPL  ++G   ++K  +    
Sbjct: 980  RAIRERDNAQQALVKAKNAAELAARTKSEFLAMMSHEIRTPLNGVLGMLNLVKRTQL--- 1036

Query: 619  GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
               +     +    S   +L+++ND+LD SK+++GK++L     ++   + +    +   
Sbjct: 1037 -EDKQRYQIDIAKSSAESLLNLINDILDFSKVDAGKLDLEVVDFNIITLLEDIAHAMAGR 1095

Query: 679  ANEKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-- 735
            A E+   +           +  D   ++QI +N++ NAI FT   G++ ++ + T N   
Sbjct: 1096 ALERGNELIIDTTKLEFTYLSGDPSRLRQILVNLIGNAIKFT-QNGEVTVTASLTKNTSG 1154

Query: 736  -EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
              + + V DTG+G+   ++      F Q+  S   +  GTGLGL + K +     G   I
Sbjct: 1155 FNLNISVADTGIGIAEEKIPLLFSAFTQVDASTTRKYGGTGLGLAICKKLCALMGGDINI 1214

Query: 795  FSTPAKGTLIEIIF 808
             S    G+      
Sbjct: 1215 TSQEGNGSEFSFQI 1228



 Score =  112 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 34/324 (10%), Positives = 96/324 (29%), Gaps = 10/324 (3%)

Query: 266 ESSLPEQEDFHTINLNQYTK---KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
               P +++F   +                              +         +     
Sbjct: 367 GRYGPYEKEFIRRDGTLLPVIMNGMLVTDSNGEKLIWSIVEDITSRKQAELALAQNRKQL 426

Query: 323 PETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
            + +D   +  + ++   G +   N  +  +  Y  +D   ++    T    P+  D + 
Sbjct: 427 EQIIDSTSVAIWDWNIVTGEIV-INERWAEIIGYSLMDLEPVSIDTWTNFTHPE--DLDK 483

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
              ++    +               +      +      +     + +   G   +  + 
Sbjct: 484 SSELLNAHWNGESNHYQCEARMHHKDGHWVWVLDSGKVIEWTSEGKPLRMVGTHLDITEQ 543

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           + ++R +E   ++L +  + + + + II+REG     N        +  +D     +  F
Sbjct: 544 KESQRLIEQSQIELKNFFDLSPNFMCIIDREGFFERINDTFLSQLDFTRDDFFSCKYIDF 603

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
           +  +   +   +  ++ S  L Q      +        L L+      P S     T  D
Sbjct: 604 VHPDDREITQDHFEKMKSGALTQVFTNRYM--HSNGDYLYLQWYTFADPASGMVYTTALD 661

Query: 561 ISEWKQEKNKLSHAKKIAEKESSH 584
           I+  K ++ +++  +++    S  
Sbjct: 662 ITNQKLDEKRMARQQEMLLSMSEQ 685



 Score = 99.7 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 69/639 (10%), Positives = 176/639 (27%), Gaps = 63/639 (9%)

Query: 74  FVFDPIPRTV-RFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH 132
           F   P+   + RFT      G   E +  L   +G  A ++ G    +++  ++ D    
Sbjct: 304 FELSPVGIALNRFT-----DGKYVETNTALENMLGYSADELHGKTYLEITSPVYEDHQKA 358

Query: 133 IGDLLKR-QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN 191
           + + LK        +      +GT   +P+ +  + +   N E      + IV       
Sbjct: 359 VINSLKNYGRYGPYEKEFIRRDGTL--LPVIMNGMLVTDSNGE---KLIWSIVEDITSRK 413

Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS--------PPPHLRMKNKVSSL 243
                  +  K+   + +                                L   +  +  
Sbjct: 414 QAELALAQNRKQLEQIIDSTSVAIWDWNIVTGEIVINERWAEIIGYSLMDLEPVSIDTWT 473

Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ-----NNSKE 298
              +    D            E +    +   H  + +          ++        + 
Sbjct: 474 NFTHPEDLDKSSELLNAHWNGESNHYQCEARMHHKDGHWVWVLDSGKVIEWTSEGKPLRM 533

Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSV 357
              +L            ++ +       D  P     +   G     N +FL    +   
Sbjct: 534 VGTHLDITEQKESQRLIEQSQIELKNFFDLSPNFMCIIDREGFFERINDTFLSQLDFTRD 593

Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
           D        S         D+  I      +     +        +  N +      +  
Sbjct: 594 D------FFSCKYIDFVHPDDREITQDHFEKMKSGALTQVFTNRYMHSNGDYLYLQWYT- 646

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
                  P +        +  + ++++++M  +   L S+ E    G   +N E   +  
Sbjct: 647 ----FADPASGMVYTTALDITNQKLDEKRMARQQEMLLSMSEQGRIGAWEVNLEEQQMYW 702

Query: 478 NRAVSKLFGYPVEDILRKP--FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
           +     +                 + E  +   ++  L   ++  +  ++E   + +   
Sbjct: 703 STMTKDIHEVDANYTPHYESAIDFYKEGESRDTISRLLNLAINKGIPASIELPIITAKHN 762

Query: 536 EKLLSLRIIIK-KLPFSSCYSLTMHDISEWKQEKN-------KLSHAKKIAEKESSHKSD 587
           E+ +S+ +  + +         ++ DI   K+ +        KL     +    ++ ++ 
Sbjct: 763 ERWVSVTVQPEFRNKQCIRLFGSIQDIDARKRIEQGVQLANTKLEKQMTLVNAIAAAQAS 822

Query: 588 FL--ARVSHEIRTPLTAIIGFSEV---IKNQRFGPLGNPRYIEYANYIDRSG-NLVLDIV 641
           F+    ++   R  L  ++  +E      ++      N  YI      +RS  +      
Sbjct: 823 FIQQTDIAIAFRNLLDGVLELAESEYGFVSEILYTEKNEPYIRTHAIANRSTHDR----- 877

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
                 +   + +     E  +LD  +  A++  +    
Sbjct: 878 -----YNAFFAAQGENPIEFFNLDSLLGAAVTSCKPVIA 911



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 47/354 (13%), Positives = 93/354 (26%), Gaps = 35/354 (9%)

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
           +  +    +       +      I        +Y   L+ N                   
Sbjct: 82  EPSQEEFASFAAPLFNQNTQLRNIAAAPGMVIKYMHPLEGNEAAIG---LDFRATPAQKE 138

Query: 315 FDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFL---LLTKYKSVDDIEIAGGLSTLLD 371
             E    T + V   P+       G +    P F          S   +     L     
Sbjct: 139 AAERAERTGQLVLAGPVNLKQGGQGFIGRI-PVFTYNKQNNTKSSWGLLSTVIDLDRFYS 197

Query: 372 APKLSDNNAIKPVMLYRSD------------RTCIAASARLHTIQWNRENSLAMTF---- 415
           A  ++  N    + L   D                 A A L  +     +          
Sbjct: 198 ATGITQFNETLQLALRGKDAKGAQGQVFYGDEALFHADAVLLEVSVPSGSWQLAILPKQG 257

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM----QLCSILEATSDGIAIINR- 470
                 +     +    I    +   I    +         +   + E +  GIA +NR 
Sbjct: 258 WANSAEDSALLRIILLLIILAILIPIIISVNLLANRHDSDLKFRGLFELSPVGIA-LNRF 316

Query: 471 -EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
            +G  + TN A+  + GY  +++  K +               +  + +       EK  
Sbjct: 317 TDGKYVETNTALENMLGYSADELHGKTYLEITSPVYEDHQKAVINSLKNYGRYGPYEKEF 376

Query: 530 LGSTKEEKLLSLRIIIKKLPFSSC---YSLTMHDISEWKQEKNKLSHAKKIAEK 580
           +    +  LL + +    +  S+        + DI+  KQ +  L+  +K  E+
Sbjct: 377 IRR--DGTLLPVIMNGMLVTDSNGEKLIWSIVEDITSRKQAELALAQNRKQLEQ 428


>gi|330862468|emb|CBX72625.1| phosphate regulon sensor protein phoR [Yersinia enterocolitica
           W22703]
          Length = 357

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 66/358 (18%), Positives = 134/358 (37%), Gaps = 35/358 (9%)

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
           +  S  E+  D + +   +G I   N    +L G+   +   +     L     S     
Sbjct: 18  RFRSGAESLPDAVIMTTIDGNIFWCNGLAQQLLGFRWPEDNGQHILNLLRYPEFSQYL-- 75

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572
                    +Q   +           +  R++           +   D+++ +Q +    
Sbjct: 76  --------QQQEFSRPLTLQLNNGYYVEFRVMPY---SEGQLLMVARDVTQMRQLEG--- 121

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF-GPLGNPRYIEYANYID 631
                       + +F A VSHE+RTPLT + G+ E++ +Q   GPL +    +    + 
Sbjct: 122 -----------ARRNFFANVSHELRTPLTVLQGYLEMMHDQELVGPLRD----KALGTMQ 166

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
                +  +V  LL +S+IE+       E V +   +      VQ  +N +   I     
Sbjct: 167 EQTKRMDGLVKQLLTLSRIEAAPNVDMNEQVDIPRMLKMLQHEVQALSNGRH-EITFRIN 225

Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751
             + ++  +   ++    N++ NA++ TP G +I +    T       +V D G G+   
Sbjct: 226 EQL-KVFGNEDQLRSAVSNLVYNAVNHTPDGTKIEVCWQRTPQG-AQFQVSDNGPGIGPE 283

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            + +  + F ++  ++  +  G+GLGL + K  +  +  +  + S    GT      P
Sbjct: 284 HVPRLTERFYRVDKARSRQTGGSGLGLAIVKHALSHHDARLDVMSEIGLGTRFIFTLP 341


>gi|218289691|ref|ZP_03493899.1| PAS/PAC sensor signal transduction histidine kinase
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218240148|gb|EED07332.1| PAS/PAC sensor signal transduction histidine kinase
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 429

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 88/394 (22%), Positives = 167/394 (42%), Gaps = 27/394 (6%)

Query: 420 KANQFPENMPQNGIEPEDVDTRINK-RKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
           +    P  +          +        +  E   L  IL+  + G+  +  +G +   N
Sbjct: 51  EYRSRPAEIAIFRHFNRMAERIQETLADLSQERDILRHILQNMTTGVIYLRSDGQVQMVN 110

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL-GSTKEEK 537
            A  +LF  PVE    +             +   +   L      + E     G T   +
Sbjct: 111 HAAERLFRRPVEQWKDRDHWTVFR---NYQLGSAIDHALLFGTPWSGEFQIRDGVTVAVR 167

Query: 538 LLSLRIIIKKLPFSSC---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
           L+ +    +    +       + ++D+SEW++ +                +SDF+A VSH
Sbjct: 168 LVPISAAPRMRNKADGRHDVLMLVNDVSEWRRLE--------------RMRSDFVANVSH 213

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           E++TP+ AI GF+E + +   G +      ++   I      + ++V+DLL++SK+E+  
Sbjct: 214 ELKTPIAAIRGFAETLLD---GDVDEEAREKFLRTIYEESLRMGNLVSDLLELSKLEASD 270

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714
            ++    V L E +  A+  V+  ANEK I I       +  + A+   + Q+ LN+L+N
Sbjct: 271 SHVDPVAVDLYEVLVRAVDRVRPVANEKEITIELPREQRL-HVWAEPDLLLQVFLNLLTN 329

Query: 715 AIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           AIH++P   ++ ++     +  V + V+D G+G+    L +  + F ++   +     GT
Sbjct: 330 AIHYSPPKSRVCVTWDVLVD-RVKVHVKDNGIGIPKESLPRVFERFYRVHKDRSRASGGT 388

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           GLGL + K +V A  G+  + S   KG+      
Sbjct: 389 GLGLAIVKHIVTALGGEVGVESEEGKGSDFWFTL 422


>gi|32474805|ref|NP_867799.1| histidine kinase (PhoR1) [Rhodopirellula baltica SH 1]
 gi|32445345|emb|CAD75346.1| putative histidine kinase (PhoR1) [Rhodopirellula baltica SH 1]
          Length = 445

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 91/407 (22%), Positives = 176/407 (43%), Gaps = 23/407 (5%)

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK-MEIEVMQLCSILEATSDGIAII 468
            L + F  +  + Q            E++     + + +  E  Q  S L   SDG+ ++
Sbjct: 54  GLLLVFRHWHSSQQDDAVSAYVRDSTEEIQKWQERLRCLHAETRQNASALLQLSDGVIVL 113

Query: 469 NREGIILSTNRAVSKLFGYP-VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
            ++  +L  N +  +L G    + +L + FT  +       +   +   +     Q    
Sbjct: 114 AKDFSVLLINPSAVRLLGLKKRDALLGRCFTELVR---VPQLLASIRSAVREQQPQEFTV 170

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
                    + L +R+ +          L++ D +E ++ +                + +
Sbjct: 171 EVHDQ-GVMRPLRVRVDLIDTGEEPNLQLSLRDETEARRVEE--------------MRRE 215

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           F+A VSHE++TPL AI G++E +  +          + +   I      +  +V++++ +
Sbjct: 216 FIANVSHELKTPLAAIKGYAETV--ELAVQDDPDAALHFMQQIMSQCLRLERLVHEMMQL 273

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707
           ++ ++G  NLH   VSL E VS+AI   +  A    + +     +   +I+AD  +   I
Sbjct: 274 ARAQAGPANLHLSSVSLSEIVSDAIRTYEPVAAANGLDLIQEVPSGEAKIIADREATLTI 333

Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
           A N++ NA+ +TPSGG+I +S      ++  L V DTGVG+   E ++  + F +   ++
Sbjct: 334 ANNLIGNALRYTPSGGEIRVSI-VEQTDQWALVVEDTGVGIPYSEQQRIFERFYRGSRNE 392

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           +    GTGLGL + K +  A  G   + STP +G+   +  P    S
Sbjct: 393 ESSTSGTGLGLAIVKHLTQAQQGDVSVTSTPGEGSRFCVCLPAVQAS 439


>gi|291436898|ref|ZP_06576288.1| two-component system sensor kinase [Streptomyces ghanaensis ATCC
            14672]
 gi|291339793|gb|EFE66749.1| two-component system sensor kinase [Streptomyces ghanaensis ATCC
            14672]
          Length = 1831

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 121/739 (16%), Positives = 259/739 (35%), Gaps = 58/739 (7%)

Query: 120  DVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFR 179
            D++  + I+    +  L    NT     TL         V  ++    I     +  G  
Sbjct: 890  DLTRQVSIEARGEVAQLADTINT--MVKTLSAFAEQVTKVAREVGTDGILGGQAQVPGVA 947

Query: 180  GFGIVHVNRVDNDPRALGKRLDKKFSHL---HEIKKGHSSVEKEKYDIFSQQSPPPHLRM 236
            G           +  A       +   +      K   +            +       M
Sbjct: 948  G--TWKDLTESVNQMASNLTGQVRNIAMVTTAIAKGDLTKKIDIDARGEILELKTTINTM 1005

Query: 237  KNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTI-----NLNQYTKKQYFGT 291
             +++SS  E        + TE    L  +         +  +      +     +Q    
Sbjct: 1006 VDQLSSFAEEVTRVAREVGTEGQ--LGGQARVRDVDGTWRDLTESVNEMAGNLTRQVRAI 1063

Query: 292  LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLL 351
             +  +  +   L+ +     S    E ++   + +             +    N + +  
Sbjct: 1064 ARVATAVTRGDLNLKIDVDASGEIQELQDYINKMIANLRDTTIANKEQDWLKGNLARISA 1123

Query: 352  TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI-AASARLHTIQWNRENS 410
                  D +E    L      P +S  +    + +   D   +  A      ++      
Sbjct: 1124 LMQGRRD-LEDVASLIMSELTPVVSAQHGAFFLAMPLVDGEDVSDADDDQFELRMLGSYG 1182

Query: 411  LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470
             +M  +P                +   +        ++I       + EA    + ++  
Sbjct: 1183 YSMGSMPTSFRPGEGLIGTAAVEKRTILVENAPTGYLKISS----GLGEAPPAQVIVLPV 1238

Query: 471  --EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY-----LTEILSLDLRQ 523
              EG +L       +L  +     ++K F   + +   + +N          +L      
Sbjct: 1239 LFEGKVLGV----VELASFTPFTAIQKDFLNQIAEMIATSVNTISVNTKTERLLKQSQEL 1294

Query: 524  TLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT-MHDI----SEWKQEKNKLSHAKKIA 578
            T +     +  E++  +L+    +L   +        DI    +E ++ +  L    +  
Sbjct: 1295 TEQLRERSAELEQRQKALQASNAELEEKAELLARQNRDIEVKNTEIEEARQVLEERAEQL 1354

Query: 579  EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
                 +KS+FLA +SHE+RTPL +++  ++++ +   G L  P+ +E+A  I  +G+ +L
Sbjct: 1355 AVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNAEGNLS-PKQVEFAETIHGAGSDLL 1413

Query: 639  DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RI 697
             ++ND+LD+SK+E+GKM++    ++L + V    +  +    EK + +    +  +P  +
Sbjct: 1414 QLINDILDLSKVEAGKMDVSPTRIALVQLVDYVEATFRPLTAEKGLDLSVRVSPELPATL 1473

Query: 698  LADLRSVKQIALNILSNAIHFTPSGGQIII--------------------STTHTSNEEV 737
              D + + Q+  N+LSNA+ FT SG   ++                    S T    + +
Sbjct: 1474 HTDEQRLLQVLRNLLSNAVKFTDSGSVELVIRPARDDVPQAIREQLLEAGSLTDPDADLI 1533

Query: 738  ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
               V DTG+G+   ++    + F Q   +   +  GTGLGL +++ +     G+ +  S 
Sbjct: 1534 AFSVSDTGIGIAASKMRVIFEAFKQADGTTSRKYGGTGLGLSISREIAQLLGGEIHAQSE 1593

Query: 798  PAKGTLIEIIFPLYDTSHP 816
            P +G+   +  PL+ +  P
Sbjct: 1594 PGRGSTFTLYLPLHPSELP 1612


>gi|288957536|ref|YP_003447877.1| two-component sensor histidine kinase [Azospirillum sp. B510]
 gi|288909844|dbj|BAI71333.1| two-component sensor histidine kinase [Azospirillum sp. B510]
          Length = 423

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 101/386 (26%), Positives = 187/386 (48%), Gaps = 19/386 (4%)

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNT 505
            E     L + L+ +++  A+ + E  ++  N  + +      + ++   PF        
Sbjct: 29  AEALAENLTAALDLSAESFALFDHEDRLVHANERLKRDLPTIADRLVPGVPFEELARGFA 88

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTK------EEKLLSLRIIIKKLPFSSCYSLTMH 559
            +       E  +  +   L++             + + L  R             +   
Sbjct: 89  LADPRLATEEERAAWIAARLDRHHRLEPPMVVPLADGRWLLSREHAVP----GGVLVHYT 144

Query: 560 DISEWK-------QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
           D++  K         + +   A+  AE  S  KS FLA++SHE+RTPL A++GFSE++  
Sbjct: 145 DVTMLKLNEERLRLREAEARAARGEAEAASRAKSAFLAQMSHELRTPLNAVLGFSEMLLT 204

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
           + FGPLGNPRY  Y   I  +G  +L +++D+L++S+++ G M +  E V LD      +
Sbjct: 205 EAFGPLGNPRYRSYVGDIRDAGTHLLALIDDILELSRLDGGGMPMAAEGVDLDMLSLRVV 264

Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
           + ++  A E  +++R   A ++P +  D +S+ Q+  N+LSNA+  T  GG+++++    
Sbjct: 265 TALREAAAEGGVIMRREVAPDLPLLQGDAQSLTQMLTNLLSNAVTHTRPGGEVVLTAHLM 324

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
            +  + + V DTGVG+   +L + + PF    ++      GTGLGLP+ K +V+ + G+ 
Sbjct: 325 PDGGIGVMVADTGVGIPTADLPRILDPFDPPDSTIARNSCGTGLGLPIVKRLVEMHGGRM 384

Query: 793 YIFSTPAKGTLIEIIFPLYDTSHPHD 818
            + S P  GT + ++FP  + S P D
Sbjct: 385 ELTSQPGVGTSVVLVFP-AERSLPRD 409


>gi|308070734|ref|YP_003872339.1| signal transduction histidine kinase [Paenibacillus polymyxa E681]
 gi|305860013|gb|ADM71801.1| Signal transduction histidine kinase [Paenibacillus polymyxa E681]
          Length = 556

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 82/322 (25%), Positives = 156/322 (48%), Gaps = 18/322 (5%)

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSS 552
           K   +           H      +  +   ++     +  +K E  + + +  K+L   S
Sbjct: 79  KDIPIIFISANSKEAEHLFAGYSAGGIDYMVKPFIPQILKSKIEGFVQMYLTNKRLKTQS 138

Query: 553 CYSLTMHDISEW-KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
              + +H  ++  ++  ++L  AK+ AE  ++ K++FLA +SHEIRTP+  +IG  +++ 
Sbjct: 139 ---MLLHQKTQQLEKMNSELIAAKEAAEIAANAKTEFLAMMSHEIRTPMNGVIGMIDLLM 195

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
                        EYA+ I RS + ++ ++ND+LD +K+ESGKM +   P  L   + E 
Sbjct: 196 ETELQS----DQQEYADIIRRSADALVAVINDILDFTKLESGKMEVEEYPFDLVSCIKEV 251

Query: 672 ISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
            SL  +  N K + +       +P +   D+  ++Q+ +N++SNA+ FT  GG + +  +
Sbjct: 252 FSLFTVEVNRKNLELVYFLDEQMPPVLYGDMGRLRQVLINLVSNAVKFTDQGG-VYVFAS 310

Query: 731 HTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
                +    V   V+DTG+G+ + ++E+  +PF Q+ +S   +  GTGLGL + K +V+
Sbjct: 311 VKEQSDNGLTVEFSVKDTGIGIDSAKVERLFQPFSQLDSSMTRKYGGTGLGLAICKTLVN 370

Query: 787 ANMGKFYIF-STPAKGTLIEII 807
              G   +  S   +G      
Sbjct: 371 MMGGDIRVDMSGE-QGVTFHFT 391


>gi|82703325|ref|YP_412891.1| multi-sensor hybrid histidine kinase [Nitrosospira multiformis ATCC
           25196]
 gi|82411390|gb|ABB75499.1| multi-sensor hybrid histidine kinase [Nitrosospira multiformis ATCC
           25196]
          Length = 866

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 101/694 (14%), Positives = 213/694 (30%), Gaps = 74/694 (10%)

Query: 184 VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYD---IFSQQSPPPHLRMKNKV 240
           V V           ++ ++ F            V +       +            +  +
Sbjct: 39  VTVIAQQQRSEQALQQSEELFRGFANAAPAMLWVTEPDGFCSFLSQGWYEFTGQDEEEGL 98

Query: 241 SSLTEYYAHKDDVLKTEKYPLLTSEE-SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE- 298
                   H +D  +  K  L  +E       +      +              +   + 
Sbjct: 99  GFGWLNAVHPEDREEASKNFLFANERKEEFFLEYRLRRADGVYRWIIDAGRPRFSLEGQF 158

Query: 299 ---SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKY 354
              +   L   +   +     E         +      +V        Y NP+   +  Y
Sbjct: 159 LGYAGNLLDITDRKQVEKDLQESREYLRAIFESVGDGLYVMGPDFRCTYLNPAGAAMLGY 218

Query: 355 KSVDDI-EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
           ++ + +      +             +  PV L   +         +   + +       
Sbjct: 219 QARELLGRHLHDIIHHTHPGGGHRAVSESPVALAVREGVPARVDDDVF-WRKDGRPVPVT 277

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM------EIEVMQLCSILEATSDGI-- 465
             +     +  P          +  + + ++ KM      E     L + +   S  +  
Sbjct: 278 YSVSPIMVDGRP--AGAVVAYRDVTEQKQSEEKMAALLGTEKGRAVLLARVANASKSMNV 335

Query: 466 -AIINREGIILSTNRAVSKLFG-----------------YPVEDILRKPFTVFLEQNTPS 507
              ++    IL+       + G                      +  K          P 
Sbjct: 336 EWSVDSIARILT--EEARSMLGAHQAVTSVTISENWAQAIRAVSLSDKYAHYHAYSEKPD 393

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLL-----------SLRIIIKKLPFSSCYSL 556
               Y+    +    +  ++        +               L + +      +   +
Sbjct: 394 GSGIYMEVCRTNCPMRMTQQEMEAHPAWKGFGKHAKDHPPMRGWLAVPLIGHGGKNLGLV 453

Query: 557 TMHDISEWKQEKN----------------KLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
            + D ++ +  +                 + ++  +   ++   K +FLA ++HE+R PL
Sbjct: 454 QLTDKTQGEFTEEDEAILVQLAAIASAGIENAYLYEQVREQDRRKDEFLATLAHELRNPL 513

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
             +     V+   +  P            ++R    ++ +++DLLD+S+I SGK+ L  E
Sbjct: 514 APVRNGLAVL---KLAPSMEATVRTR-EIMERQVEHMVHLIDDLLDVSRITSGKVQLKKE 569

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720
            V +   +  A+ L +    E +  +  S       + AD   + Q+  N+L+NA  +T 
Sbjct: 570 WVDVRAVLDAALELSRPLIKENQHRLFISNPKESLLLDADPTRMTQVVSNLLNNAAKYTS 629

Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
            GGQI +S       EVI+RVRD GVG+T+  L +  + F Q+  +      G G+GL L
Sbjct: 630 KGGQIELSAE-RDGSEVIIRVRDNGVGLTSEALLEVFELFSQVGKTLDRSQGGLGIGLAL 688

Query: 781 AKAMVDANMGKFYIFST-PAKGTLIEIIFPLYDT 813
            K +V+ + G     S    +G+   +  PL  T
Sbjct: 689 VKRLVEMHNGSITAESQGLGQGSTFVVRLPLPPT 722



 Score =  129 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 37/336 (11%), Positives = 98/336 (29%), Gaps = 21/336 (6%)

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
           +    +E    +  +Q                + +               + E L     
Sbjct: 4   TRFGLEERDVLVTGSQRAGFPTEDDRLLLELAANQVTVIAQQQRSEQALQQSEELFRGFA 63

Query: 327 DKCPIPFFVYSHGNLF-YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
           +  P   +V        + +  +   T     + +    G   L          A K  +
Sbjct: 64  NAAPAMLWVTEPDGFCSFLSQGWYEFTGQDEEEGL----GFGWLNAVHPEDREEASKNFL 119

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
                +       RL   +        +      + +   + +   G   +  D +  ++
Sbjct: 120 FANERKEEFFLEYRL---RRADGVYRWIIDAGRPRFSLEGQFLGYAGNLLDITDRKQVEK 176

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            ++     L +I E+  DG+ ++  +      N A + + GY   ++L +     +    
Sbjct: 177 DLQESREYLRAIFESVGDGLYVMGPDFRCTYLNPAGAAMLGYQARELLGRHLHDIIHHTH 236

Query: 506 PSVMNHYLTE-----ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLT 557
           P   +  ++E      +   +   ++       K+ + + +   +  +          + 
Sbjct: 237 PGGGHRAVSESPVALAVREGVPARVDDDVFWR-KDGRPVPVTYSVSPIMVDGRPAGAVVA 295

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
             D++E KQ + K+             ++  LARV+
Sbjct: 296 YRDVTEQKQSEEKM----AALLGTEKGRAVLLARVA 327



 Score = 70.4 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/210 (8%), Positives = 60/210 (28%), Gaps = 12/210 (5%)

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
              +                  + +++ ++           A    + +   +G     +
Sbjct: 24  PTEDDRLLLELAANQVTVIAQQQRSEQALQQSEELFRGFANAAPAMLWVTEPDGFCSFLS 83

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
           +   +  G   E+ L   +   +        +     + + + ++           +   
Sbjct: 84  QGWYEFTGQDEEEGLGFGWLNAVHPEDREEASKNF--LFANERKEEFFLEYRLRRADGVY 141

Query: 539 LSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
             +    +           Y+  + DI++ KQ +  L  +++          D L  +  
Sbjct: 142 RWIIDAGRPRFSLEGQFLGYAGNLLDITDRKQVEKDLQESREYLRAIFESVGDGLYVMGP 201

Query: 595 EIR-TPLT----AIIGF-SEVIKNQRFGPL 618
           + R T L     A++G+ +  +  +    +
Sbjct: 202 DFRCTYLNPAGAAMLGYQARELLGRHLHDI 231



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 35/302 (11%), Positives = 84/302 (27%), Gaps = 22/302 (7%)

Query: 33  GFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAH 92
           GF TE    ++        +  T   Q+  S      SE  F            W  +  
Sbjct: 22  GFPTE----DDRLLLELAANQVTVIAQQQRSEQALQQSEELFRGFANAAPA-MLWVTEPD 76

Query: 93  GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTWYGKTTLWP 151
           G+   +S+   +  G    + +G    +       +  +       +R+  ++ +  L  
Sbjct: 77  GFCSFLSQGWYEFTGQDEEEGLGFGWLNAVHPEDREEASKNFLFANERKEEFFLEYRLRR 136

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
            +G  +Y  I  A  P +S   +F G+ G  +              +   +    + E  
Sbjct: 137 ADG--VYRWIIDAGRPRFSLEGQFLGYAGNLL--DITDRKQVEKDLQESREYLRAIFESV 192

Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK-----------DDVLKTEKYP 260
                V    +       P     +  +   L   + H              V ++    
Sbjct: 193 GDGLYVMGPDFRCTYLN-PAGAAMLGYQARELLGRHLHDIIHHTHPGGGHRAVSESPVAL 251

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
            +     +  + + F   +            +  + + +   +++R+        ++   
Sbjct: 252 AVREGVPARVDDDVFWRKDGRPVPVTYSVSPIMVDGRPAGAVVAYRDVTEQKQSEEKMAA 311

Query: 321 LT 322
           L 
Sbjct: 312 LL 313



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/137 (10%), Positives = 33/137 (24%), Gaps = 12/137 (8%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI-------DPNNHIGDLLK 138
            + +        ++      +G  A +++G  L D+    H          +     + +
Sbjct: 196 LYVMGPDFRCTYLNPAGAAMLGYQARELLGRHLHDIIHHTHPGGGHRAVSESPVALAVRE 255

Query: 139 RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
                      W  +G    VP+  +  PI   +   +G                     
Sbjct: 256 GVPARVDDDVFWRKDGRP--VPVTYSVSPIM-VDGRPAGA--VVAYRDVTEQKQSEEKMA 310

Query: 199 RLDKKFSHLHEIKKGHS 215
            L         +    +
Sbjct: 311 ALLGTEKGRAVLLARVA 327


>gi|302036187|ref|YP_003796509.1| putative hybrid histidine kinase [Candidatus Nitrospira defluvii]
 gi|300604251|emb|CBK40583.1| putative Hybrid histidine kinase [Candidatus Nitrospira defluvii]
          Length = 945

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 101/518 (19%), Positives = 186/518 (35%), Gaps = 34/518 (6%)

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364
                S+             T         + +   +  A   +   +   S+  I+   
Sbjct: 18  IEIRQSIEQATQARALAVSRTFSMVGAAAVLDNLFRIQEAFGRYAQDSDILSILIIDPDN 77

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
            +    +  ++      + +           A    H    +   +L +      + +  
Sbjct: 78  MIVAATNPRQIGQQLTDETLAQAH----ETNAETISHGQTVDGVPTLLVATPLLNEQDIA 133

Query: 425 PENMPQNGIEPEDVDTRINKRKM-EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
                +  +     +     R +  + V+ + + +     GI             R +S 
Sbjct: 134 AWVRIEFSLAAMQEELTREARHLFLLSVLFMGATISVAQLGI-------------RRMSG 180

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           LF    E + +   T+          +       S         +            +  
Sbjct: 181 LFRETAEKLQKTLHTLHCVSEQAPSGDAASDHDNSHASPSCKGDLEQVVD------LVET 234

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN--KLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
               L   +    +  D  E    +   +L  AK+ AE  +  KS FLA +SHEIRTP+ 
Sbjct: 235 TTTLLTTQAQRLQSFTDSLEQAVRERTTELHQAKEAAEAANRAKSQFLANMSHEIRTPMN 294

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
            ++G +E++ +         +       + RSG  ++DI+N++LD SKIE+GK+ L    
Sbjct: 295 GVLGMTELLLSTAL----TQKQRSLTETLHRSGTGLMDIINEILDFSKIEAGKLKLERIE 350

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTP 720
             L + V +A+ L    A  K + +      +IP  ++ D   ++QI LN++ NAI FT 
Sbjct: 351 FGLRQTVEDAVDLFAETAGRKHLELTCFVPPDIPDTVIGDPVRLRQILLNLVGNAIKFTQ 410

Query: 721 SGG---QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
           SG     + + T  T+N  +  R+RDTGVG+      +  + F Q  NS   +  GTGLG
Sbjct: 411 SGDVAVTLELVTPTTTNLTLKFRIRDTGVGIPEATQARLFQAFSQADNSTTRKFGGTGLG 470

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
           L + K +     G   + S   +G+       L   + 
Sbjct: 471 LAIVKQLALLMGGDVGVDSVSGQGSTFWFTVELEQAAQ 508


>gi|237746831|ref|ZP_04577311.1| two-component hybrid sensor kinase/response regulator [Oxalobacter
           formigenes HOxBLS]
 gi|229378182|gb|EEO28273.1| two-component hybrid sensor kinase/response regulator [Oxalobacter
           formigenes HOxBLS]
          Length = 872

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 99/383 (25%), Positives = 162/383 (42%), Gaps = 17/383 (4%)

Query: 440 TRINKRKMEIEV---MQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRK 495
            R+  R+++        L  I +       + N   G +   +     + G     + R 
Sbjct: 192 QRMAYRRIQERRFHDDVLQIISDNAGHVFLLYNFYTGEMEYVSPNAFGVLGIQRSVLKRY 251

Query: 496 PFTVFLE--QNTPSVMNHYLTEILSLDLRQTLEKITLG-STKEEKLLSLRIIIKKLPFSS 552
           P         +  + +  +   +  L      E       T  ++ +S+ I   +   +S
Sbjct: 252 PLLFVDRCSPDRAAEIGKWFNGVDVLKHPVFHEVQFTNPETGSKRWISISIYPVREKDNS 311

Query: 553 CYSLTM--HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
                    D+S+ KQ +  L  A   AEK +  KS FL+R+SHEIRTP+ AIIG + + 
Sbjct: 312 QLRCIFSITDLSDIKQAQQVLKDALFNAEKANEAKSSFLSRMSHEIRTPMNAIIGMTTIA 371

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
                      +     + I  S   +L ++ND+LD+SKIESGKM +  +P  L E +  
Sbjct: 372 AT---VMNDRAKLENCLSKIALSSRHLLMLINDVLDVSKIESGKMTVTKDPFELGELMQN 428

Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST- 729
             S++   A  K+             +  D+  + QI +NILSNA+ FTP  G++ +   
Sbjct: 429 IGSIIYSQAITKKQHFEIVTNVRHETLRGDILRLNQILINILSNAVKFTPENGRVRLQVE 488

Query: 730 ----THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
                HT    +   + D+G GM+   L +   PF Q  +      EGTGLG+P+ K +V
Sbjct: 489 EIAKRHTDQIWLRFTISDSGRGMSPEFLNRLFMPFEQENDGSGKLVEGTGLGMPITKNLV 548

Query: 786 DANMGKFYIFSTPAKGTLIEIIF 808
               G   + S P KGT+  +  
Sbjct: 549 TLMNGTINVESVPGKGTVFTVEI 571


>gi|218889772|ref|YP_002438636.1| putative two-component sensor [Pseudomonas aeruginosa LESB58]
 gi|218769995|emb|CAW25757.1| probable two-component sensor [Pseudomonas aeruginosa LESB58]
          Length = 1212

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 108/604 (17%), Positives = 228/604 (37%), Gaps = 26/604 (4%)

Query: 225 FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYT 284
              Q  P       ++  L    A    + ++ K   +     S            +   
Sbjct: 336 LHFQVTPRSGGFPEQIGVLARKEADLAIMSRSSKREEMLRFTRSFLSTSYVLVTRADDKG 395

Query: 285 KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY- 343
           + +  G+L                     Y           +D   +  +          
Sbjct: 396 RAESPGSLDGKRIAIPAG-HVGMQQVRERYPQASMVEVGVALDAMNL-VYEGRADAAVVP 453

Query: 344 -ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT 402
                + ++  ++    I     +        +   +A    +L ++  +          
Sbjct: 454 LVTARYYIVRLFRERLAIADLVPIGAATAHFAVRRGDAELQSILDKALLSISPDDLSDIV 513

Query: 403 IQWNRENS----LAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN-------KRKMEIEV 451
            +W           + +I                        R         ++ +  ++
Sbjct: 514 NRWRSPPGMSGQTWVDYILVITEILAIAAALLLLCLGWVTYQRRQIRVRARVEQALSDQL 573

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
             + ++ +     + + +  G +LS NR+  +  G   E+++ +       +N  +    
Sbjct: 574 RFVEALTDCMPPPLYVRDVNGRMLSCNRSYLQSVGLSSEEVMNRTVLELPMENFETAPEF 633

Query: 512 YLTEILSLDLRQTLEKIT-LGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEK 568
           + + ++++   +T+E +  +     E+ +   I   +              DI+E +Q  
Sbjct: 634 HRSYLMAMREGRTIEAVYPVALGGRERWIDHWIQPFRDSSGTIRGVICGWLDITEHRQLI 693

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
           ++L  AK +A++ S  K+ FLA +SHEIRTP+ A+IG  E+   +      +        
Sbjct: 694 DELEEAKNLADEASRAKTTFLATMSHEIRTPMNAVIGILELALKRAETGRVD---RSSIE 750

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
               S   +L+++ D+LDI++IESG+++L  +  +L E V     + +  A +KR+ +  
Sbjct: 751 IAYASAKSLLELIGDILDIARIESGRLSLSPKRANLRELVESVARVFEGLARQKRLSLVL 810

Query: 689 SFANNI-PRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNE--EVILRVRDT 744
              ++I   +L D    KQI  N++SNAI FT  G  +I I          +V L V DT
Sbjct: 811 EIDSSINGDVLLDAMRFKQILSNLVSNAIKFTDEGSIRIRIDGRQVEPSLLQVNLCVEDT 870

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G++  + ++  +PF Q+  + Q   EGTGLGL +++++ +   G+  + S   +GT I
Sbjct: 871 GIGISLGDQQQLFRPFAQVNRNLQ-NTEGTGLGLVISRSLCEMMGGRLVMSSELGQGTRI 929

Query: 805 EIIF 808
           ++  
Sbjct: 930 DVEL 933



 Score = 47.7 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 64/243 (26%), Gaps = 11/243 (4%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D +G +   +    +++G  + +++   + ++               L           +
Sbjct: 591 DVNGRMLSCNRSYLQSVGLSSEEVMNRTVLELPMENFETAPEFHRSYLMAMREGRTIEAV 650

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFR-GFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           +P+        ID    P    +    G   G+  +  +R   D     K L  + S   
Sbjct: 651 YPVALGGRERWIDHWIQPFRDSSGTIRGVICGWLDITEHRQLIDELEEAKNLADEASRAK 710

Query: 209 EIKKGHSSVE--KEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
                  S E       +              +V   +   A+       E    +    
Sbjct: 711 TTFLATMSHEIRTPMNAVIGILELALKRAETGRVDRSSIEIAYASAKSLLELIGDILDIA 770

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
                +       L+   K+     L  +    FE L+ +   SL    D   N     +
Sbjct: 771 RIESGR-------LSLSPKRANLRELVESVARVFEGLARQKRLSLVLEIDSSING-DVLL 822

Query: 327 DKC 329
           D  
Sbjct: 823 DAM 825


>gi|16611830|gb|AAL27373.1|AF426171_4 HydH [Yersinia pestis]
          Length = 607

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 82/376 (21%), Positives = 162/376 (43%), Gaps = 28/376 (7%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           ++++ +++        I+     G+   N E +I   N    K+FG   + +  +     
Sbjct: 237 QLSRHQLQDSKAISTEIINNLPIGLITTNEEQLISVVNHTAEKIFGISKDILTGQNIHQA 296

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL---- 556
           L      ++        S   +  +E       KE  ++ L I +  +   +   L    
Sbjct: 297 LPPEWNLLVK------KSQRHQPVIEHEFDYKLKEGLIIPLSISVANIVNHNGSFLGNIF 350

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
              D+ E +Q + ++   +K+A        +  A V+HEIR PL++I GF++    +   
Sbjct: 351 IFRDMREVRQLQEEIRRKEKLA-----AIGNLAAGVAHEIRNPLSSIKGFAKYF--EGHS 403

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
           P G+    E A  + +  + +   V +LL + +      +L  + V+++E ++ ++ L++
Sbjct: 404 PQGSEEQ-ELAKVMIKEVDRLNRAVTELLGLVRPS----DLRIQLVNINEIIAHSLHLIR 458

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
             A+ K+I I+     N+PR+  D     Q  LN+  NAI      G + I+       +
Sbjct: 459 QDADSKKITIQFISNENLPRVEIDPDRFTQALLNLYLNAIQAMGRAGTLEIALALVEESK 518

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           + + V DTG G+   +LE    P+     S      GTGLGL + + +++ + G+  + S
Sbjct: 519 LRISVIDTGKGIRAEDLENIFNPYFTTKAS------GTGLGLAIVQKVIEEHQGRITVTS 572

Query: 797 TPAKGTLIEIIFPLYD 812
            P  GT  ++  PL  
Sbjct: 573 HPQSGTRFDMTIPLVQ 588


>gi|258512528|ref|YP_003185962.1| PAS/PAC sensor signal transduction histidine kinase
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257479254|gb|ACV59573.1| PAS/PAC sensor signal transduction histidine kinase
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 429

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 88/394 (22%), Positives = 167/394 (42%), Gaps = 27/394 (6%)

Query: 420 KANQFPENMPQNGIEPEDVDTRINK-RKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
           +    P  +          +        +  E   L  IL+  + G+  +  +G +   N
Sbjct: 51  EYRSRPAEIAIFRHFNRMAERIQETLADLSQERDILRHILQNMTTGVIYLRSDGQVQMVN 110

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL-GSTKEEK 537
            A  +LF  PVE    +             +   +   L      + E     G T   +
Sbjct: 111 HAAERLFRRPVEQWKDRDHWTVFR---NYQLGSAIDHALLFGTPWSGEFQIRDGVTVAVR 167

Query: 538 LLSLRIIIKKLPFSSC---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
           L+ +    +    +       + ++D+SEW++ +                +SDF+A VSH
Sbjct: 168 LVPISAAPRMRNKADGRHDVLMLVNDVSEWRRLE--------------RMRSDFVANVSH 213

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           E++TP+ AI GF+E + +   G +      ++   I      + ++V+DLL++SK+E+  
Sbjct: 214 ELKTPIAAIRGFAETLLD---GDVDEEAREKFLRTIYEESLRMGNLVSDLLELSKLEASD 270

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714
            ++    V L E +  A+  V+  ANEK I I       +  + A+   + Q+ LN+L+N
Sbjct: 271 SHVDPVAVDLYEVLVRAVDRVRPVANEKEITIELPREQRL-HVWAEPDLLLQVFLNLLTN 329

Query: 715 AIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           AIH++P   ++ ++     +  V + V+D G+G+    L +  + F ++   +     GT
Sbjct: 330 AIHYSPPKSRVCVTWDVLVD-RVKVHVKDNGIGIPKESLPRVFERFYRVHKDRSRASGGT 388

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           GLGL + K +V A  G+  + S   KG+      
Sbjct: 389 GLGLAIVKHIVTALGGEVGVESEEGKGSDFWFTL 422


>gi|317492786|ref|ZP_07951210.1| phosphate regulon sensor kinase PhoR [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316918908|gb|EFV40243.1| phosphate regulon sensor kinase PhoR [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 440

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 73/409 (17%), Positives = 148/409 (36%), Gaps = 47/409 (11%)

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
            + L +       A +        G+       R  +R++ + + +  S  E+  D I +
Sbjct: 45  SHWLWVDRSMTPPAGRGSWEPLFYGLYQMQQRNRRRRRELALLIKRFRSGAESLPDAIIM 104

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
              EG I   N     L G+   +   +     L     +               Q   +
Sbjct: 105 TTEEGNIFWCNGLAQHLLGFRWPEDNGQHILNLLRYPEFTQYL----------QSQDFTR 154

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
                    + +  R++           +   D+++ +Q +                + +
Sbjct: 155 PLTLHLNNGRFVEFRVMPY---AEGQLLMVARDVTQTRQLEGT--------------RRN 197

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           F A VSHE+RTPLT + G+ E++ ++       P   +    +      +  +V  LL +
Sbjct: 198 FFANVSHELRTPLTVLQGYLEMMNDEDMAA---PVRQKALVTMQEQTRRMDSLVKQLLTL 254

Query: 648 SKIESGKMNLHFEPVSLDEAVSE--AISLVQLYA-----NEKRILIRTSFANNIPRILAD 700
           SKIE+        P++L+E V     + +++  A         I  R +   +  ++  +
Sbjct: 255 SKIEAAP------PIALNEIVDIPVMLHMLEREALSLSNGRHEITFRIN---DKLKVFGN 305

Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760
              ++    N++ NA++ TP G +I +    T+       V D G G+    L    + F
Sbjct: 306 DDQLRSAVSNLVYNAVNHTPDGTKIEVCWQQTAQG-AQFEVSDNGPGIAPEHLGHLTERF 364

Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            ++  ++  +  G+GLGL + K  ++ +     I S    GT      P
Sbjct: 365 YRVDKARSRQTGGSGLGLAIVKHALNHHEATLNIMSEIGLGTRFVFTLP 413


>gi|158337549|ref|YP_001518724.1| circadian input kinase [Acaryochloris marina MBIC11017]
 gi|158307790|gb|ABW29407.1| circadian input kinase [Acaryochloris marina MBIC11017]
          Length = 735

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 89/298 (29%), Positives = 148/298 (49%), Gaps = 7/298 (2%)

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH 573
            + L     Q  E+  L    E   +++ I    L           D  + +Q   +L  
Sbjct: 302 HQCLHPRQWQVQEQDLLKRMAE--HVAIAIHQAALQDQVRQHKQTLD-KQVEQRTQELHA 358

Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
           A   A+  +  KSDFLA +SHE+RTPLT +IG S  +     GPL + +       I  S
Sbjct: 359 ALLAAQSSNQAKSDFLATMSHELRTPLTCVIGMSATLLRWSLGPLTD-KQRSCLQTIHDS 417

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR--TSFA 691
           G  +L+++ND+LD S ++SGK  L+    SL   V + + +++  A+  ++ ++      
Sbjct: 418 GEHLLELINDILDFSHVQSGKATLNVSDFSLTTLVQQLLQVMRDKADAHQVQLKANLKIP 477

Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751
               R +ADLR V+QI +++  NAI FTP GG++ +     +N  V+ +V DTG+G+++ 
Sbjct: 478 PERDRFIADLRRVQQILISLTDNAIKFTPMGGKVTLRVWVETN-TVVFQVEDTGIGISSS 536

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +L    + F Q+  S     EG GLGL LA+  V  + G   + S   +G++  +  P
Sbjct: 537 QLPHLFEKFQQLDGSYHRTYEGAGLGLALAQQCVTLHQGWIDVSSEEGQGSIFTVQLP 594


>gi|330809673|ref|YP_004354135.1| histidine kinase, Hybrid [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327377781|gb|AEA69131.1| putative Histidine kinase, Hybrid [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 642

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 83/520 (15%), Positives = 179/520 (34%), Gaps = 39/520 (7%)

Query: 318 GENLTPETVDKCPI-PFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
            E      +D       ++    G +   N        Y   + +      S        
Sbjct: 13  EEQRFRLLIDAVVDYAIYMTDPSGIITSWNSGARRFKGYAESEILGQ--HFSRFYTDQDR 70

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
           +     + +     +            ++ +     +   I     +Q    +    I  
Sbjct: 71  AAGLPQRALDTAVQEGR---FEGEGWRVRKDGTLFWSHVVIDPIIDSQSGTLLGFAKITR 127

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILR 494
           +  D ++ +  ++    Q   ++++ +D  I +++ +G + + N    ++ GY   + + 
Sbjct: 128 DLTDRKMAEETLKQSEQQFRLLVQSVTDYAIYMLDPQGQVTNWNLGAQRIKGYLPAEAIG 187

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554
           + F++F               +         EK      K+       ++I  +   +  
Sbjct: 188 QHFSMFYTPEDRDTG-EPQRALSIAASEGRFEKKGWRMRKDGTRFMAHVVIDAIRSDTGT 246

Query: 555 SL----TMHDISEWKQEKNKLSHAKKIAEKES--SHKSDFLARVSHEIRTPLTAIIGFSE 608
            L       DI++  Q +  L  A++   +             ++H+    LT I+G  E
Sbjct: 247 LLGFAKITRDITDATQAQQALEQAREALFQSQKLQAIGQLTGGIAHDFNNLLTVILGNLE 306

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
           +++ +       P+  +  +   +     + +   +L  ++    +  L +E V L   V
Sbjct: 307 IVRKRM---PNEPKLTQLLDNATQGALRGVSLTQRMLAFAR----RQKLTYESVELSALV 359

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
                L+Q       I I+T FA  +  +LAD+  ++   LN+ +NA    P GGQ++I+
Sbjct: 360 QGISGLLQSSL-GPSIHIQTRFAEALSPVLADVNQLELAILNLATNARDAMPHGGQLMIT 418

Query: 729 TTHT------------SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
                               + L + D G GM    L  A+ PF          G+GTGL
Sbjct: 419 ADERQGCDAAPDKPMAPGRYICLAITDEGEGMDEATLASAVDPFFTTKG----VGKGTGL 474

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           GL +   + +   G+  + S    GT  ++  P+ +   P
Sbjct: 475 GLSMVHGLAEQLGGRLTLRSQKGVGTTAQLWLPVANNPAP 514



 Score = 60.0 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/277 (9%), Positives = 73/277 (26%), Gaps = 15/277 (5%)

Query: 60  ESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLC 119
           E+   T  ++ E  F            +  D  G +   +    +  G    +++G    
Sbjct: 3   ENAPKTPLMNEEQRFRLLIDAVVDYAIYMTDPSGIITSWNSGARRFKGYAESEILGQHFS 62

Query: 120 DVSDILHIDPNNHIGDLLKR---QNTWYGKTTLWPIEGTNLYVPIDLAALPIYS-RNREF 175
                            L     +  + G+      +GT  +  + +   PI   ++   
Sbjct: 63  RF-YTDQDRAAGLPQRALDTAVQEGRFEGEGWRVRKDGTLFWSHVVID--PIIDSQSGTL 119

Query: 176 SGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL- 234
            GF    I              K+ +++F  L +    ++    +     +  +      
Sbjct: 120 LGFAK--ITRDLTDRKMAEETLKQSEQQFRLLVQSVTDYAIYMLDPQGQVTNWNLGAQRI 177

Query: 235 --RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTI---NLNQYTKKQYF 289
              +  +         +  +   T +     S  +S    E        +  ++      
Sbjct: 178 KGYLPAEAIGQHFSMFYTPEDRDTGEPQRALSIAASEGRFEKKGWRMRKDGTRFMAHVVI 237

Query: 290 GTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
             +++++     +       + +    +      E +
Sbjct: 238 DAIRSDTGTLLGFAKITRDITDATQAQQALEQAREAL 274



 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/252 (11%), Positives = 55/252 (21%), Gaps = 13/252 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL---KRQNT 142
            + +D  G +   +    +  G    + IG            D        L     +  
Sbjct: 158 IYMLDPQGQVTNWNLGAQRIKGYLPAEAIGQHFSMFYTPEDRD-TGEPQRALSIAASEGR 216

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
           +  K      +GT     + + A  I S      GF    I          +   ++  +
Sbjct: 217 FEKKGWRMRKDGTRFMAHVVIDA--IRSDTGTLLGFAK--ITRDITDATQAQQALEQARE 272

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
                 +++          +D          L     V            +L       L
Sbjct: 273 ALFQSQKLQAIGQLTGGIAHDF--NNLLTVILGNLEIVRKRMPNEPKLTQLLDNATQGAL 330

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
                +           L   + +     +Q  S      L    H            L 
Sbjct: 331 RGVSLTQRMLAFARRQKLTYESVEL-SALVQGISGLLQSSLGPSIHIQTRFAEALSPVLA 389

Query: 323 PETVDKCPIPFF 334
              V++  +   
Sbjct: 390 D--VNQLELAIL 399


>gi|302879698|ref|YP_003848262.1| histidine kinase [Gallionella capsiferriformans ES-2]
 gi|302582487|gb|ADL56498.1| histidine kinase [Gallionella capsiferriformans ES-2]
          Length = 430

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 76/369 (20%), Positives = 152/369 (41%), Gaps = 30/369 (8%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           ++ K+K+  E++ +     A  +G+A +N    I   N      FG   +  + +  T  
Sbjct: 87  KLTKQKLANELLNIEQATAALPEGVASLNEANRIEWCNPLAEHHFGLNAQRDIMQDITYL 146

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
           +          YL                +  +     + L I +     +    L   D
Sbjct: 147 VR---QPEFIDYLQA-------GDFAAPLVMRSARHDDMVLSIKLVFYGDNKR-LLISRD 195

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I++ ++ +                + DF+A VSHE+RTPLT + GF E +++     L +
Sbjct: 196 ITQLERIET--------------MRRDFVANVSHELRTPLTVVNGFVENLQD--MPDLSH 239

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
            +       +      +  +V+DLL +S++ES +  L  E V +   +SE    +     
Sbjct: 240 DKIQRALQLMAEQTRRMDHLVSDLLTLSRLESDQSPLKIESVDMYSLLSEV--SLDGEML 297

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
                  +  A    ++  +   ++    N++SNA+ +TP GG I +   ++   + +  
Sbjct: 298 SGGRHQHSMDATGPAKLSGNRDELRSAFSNLVSNAVRYTPDGGTISLRW-YSRAGQPVFS 356

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           VRD+G+G+    + +  + F ++  S+     GTGLGL + K +   +  K  + S   +
Sbjct: 357 VRDSGIGIEAQHIPRLTERFYRVDRSRSRETGGTGLGLAIVKHIALRHQAKLEVCSEEGR 416

Query: 801 GTLIEIIFP 809
           G+   ++FP
Sbjct: 417 GSTFSLVFP 425


>gi|229165941|ref|ZP_04293706.1| hypothetical protein bcere0007_9170 [Bacillus cereus AH621]
 gi|228617494|gb|EEK74554.1| hypothetical protein bcere0007_9170 [Bacillus cereus AH621]
          Length = 883

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 78/341 (22%), Positives = 150/341 (43%), Gaps = 24/341 (7%)

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            +D++++            +    +  +L      T E        + +   L++  ++L
Sbjct: 382 HQDLIQQTVDNLGLTIHSIMGRMRIQTLLHESQAMTEELQVQSEELQTQAEELQMQAEEL 441

Query: 549 PFSSCYSLTMHDISEWKQEK-----NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
             ++    +  + +E K        ++L        + S +KS+FLA +SHE+RTPL +I
Sbjct: 442 RTTNEQLESRTEEAEQKTADLQITKSELEEKASEILRSSKYKSEFLANMSHELRTPLNSI 501

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +  SE+++      L +    E A  I  SG  +L ++ND+LD+SK+E+GK+++ FE  +
Sbjct: 502 LLLSEMLRENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIFEATN 560

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSG 722
           + +  +         A +K +      ++ IP +   D + ++QI  N+LSNA  FT  G
Sbjct: 561 ISDMAANMHQNFLHIAAQKNVEFTIEDSDIIPDLFYTDAKRIEQIIKNLLSNAFKFTEKG 620

Query: 723 GQIIISTTHTS--------------NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
               +S                   N+ + + V+DTG+G+   + +   + F Q   +  
Sbjct: 621 S---VSLHFDPIETTNLSNEMQSISNDWITISVKDTGIGIATEQHQLIFEAFQQADGATI 677

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            +  GTGLGL + K       G   + S   +G+   +  P
Sbjct: 678 RKYGGTGLGLSICKEFARLLGGWITLESNVGEGSTFTVYIP 718


>gi|254458425|ref|ZP_05071850.1| PAS/PAC sensor signal transduction histidine kinase
           [Campylobacterales bacterium GD 1]
 gi|207084733|gb|EDZ62020.1| PAS/PAC sensor signal transduction histidine kinase
           [Campylobacterales bacterium GD 1]
          Length = 514

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 100/380 (26%), Positives = 176/380 (46%), Gaps = 12/380 (3%)

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
           +       +    K+E +  QL   ++  S  ++  N +GII   N+A  ++ GY ++++
Sbjct: 143 VVEHIETLKNRNSKLENKNTQLNKAID-ASVLVSKSNTKGIITYANQAFIEVSGYSLDEL 201

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
           +     +    +T   + H + + +          +     K+     + + I  +  + 
Sbjct: 202 IGNSHNIVRHSDTEDELYHDMWKTIRSKK--VWRGMLKNKAKDGHDYYVDVTIVPVLNTK 259

Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
                   I   + E   L  A + A++    K  FLA +SHE+RTPLTAI+GFS++I  
Sbjct: 260 NRISEFLSI---RYEVTNLVLATRKAQESQMAKEQFLANMSHELRTPLTAILGFSQMIMA 316

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
           +   P          + I+ +G  +L  VN +LD+SKIESG+M   F+   L     E  
Sbjct: 317 RADTP---EIISNCVSKINIAGINLLTQVNTILDLSKIESGQMTYQFDNFQLKPLFEELR 373

Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS-TTH 731
            +++  A +K I +      +   +  D  S+KQ+ +N+LSNAI FT     + IS T +
Sbjct: 374 VILESQAKDKNISLIMPM-IDKEEMHGDKLSIKQVFMNLLSNAIKFTAINTTVEISYTCN 432

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV-DANMG 790
              +E I +V D G G+   +++   +PF Q  NS+     GTGLGL + K +V D + G
Sbjct: 433 IEQKEHIFKVYDQGDGVDEKDIQTLFEPFYQGENSRINATPGTGLGLAICKKIVTDVHKG 492

Query: 791 KFYIFSTPAKGTLIEIIFPL 810
           K  + +    G+   +  P+
Sbjct: 493 KIGVENIKNGGSCFYMTIPI 512



 Score = 46.9 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 11/72 (15%), Positives = 26/72 (36%), Gaps = 1/72 (1%)

Query: 93  GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWP 151
           G +   ++   +  G    ++IG     V      D   + +   ++ +  W G      
Sbjct: 181 GIITYANQAFIEVSGYSLDELIGNSHNIVRHSDTEDELYHDMWKTIRSKKVWRGMLKNKA 240

Query: 152 IEGTNLYVPIDL 163
            +G + YV + +
Sbjct: 241 KDGHDYYVDVTI 252


>gi|238763419|ref|ZP_04624382.1| Histidine kinase [Yersinia kristensenii ATCC 33638]
 gi|238763500|ref|ZP_04624462.1| Histidine kinase [Yersinia kristensenii ATCC 33638]
 gi|238698282|gb|EEP91037.1| Histidine kinase [Yersinia kristensenii ATCC 33638]
 gi|238698363|gb|EEP91117.1| Histidine kinase [Yersinia kristensenii ATCC 33638]
          Length = 1189

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 89/378 (23%), Positives = 170/378 (44%), Gaps = 16/378 (4%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           R   + ++  + Q  SI+ A    + I  ++G +   N   +      + D+L +     
Sbjct: 505 RRQAKLLQARLRQQESIINALPFAVFIRTKKGELAVYNNHFAAAHQDKLNDMLNQKTEQA 564

Query: 501 LEQNTPSVMNH---YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-YSL 556
               T  +      Y   +L     Q ++   L      +L  + + I  L  +      
Sbjct: 565 QWPMTSPLDREIDKYCRYVLRDRQPQMVD---LSLEINNELRDIFLWIIPLDNAERSLLG 621

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
              DIS+ K  + +L  A+  AE  +  KS FLA +SHE+RTP+ AI+G  E ++ +   
Sbjct: 622 GWLDISQRKTVERELEAARVEAESANRTKSTFLATISHELRTPMYAIMGLLE-LEIRSDQ 680

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
           P+           + +S   ++ +++D++D +KIE+G++++H   V   + +    ++ Q
Sbjct: 681 PVD----KNTLVTVSKSAQSLMLLLDDIIDSAKIEAGQLSVHPAVVDFRQEIERMFTIYQ 736

Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ---IIISTTHT 732
             A+E+ +       ++IP  ++ D+  V+Q+  N+L NA+ FT  GG    I   +   
Sbjct: 737 PIADERNLRFSGWLDDHIPDLVMVDMLRVRQVMGNLLGNALKFTEQGGVSVDITWESIDE 796

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
            +  + + + DTG+G++        +PF Q       R  G+GLGL +   ++    G+ 
Sbjct: 797 KHGIMNIDITDTGIGISPAAQATLFQPFSQANEGTSPRFGGSGLGLWICHQLIHKMGGEI 856

Query: 793 YIFSTPAKGTLIEIIFPL 810
            + S   KGT + I  PL
Sbjct: 857 TLESQLGKGTSLFITLPL 874


>gi|332161273|ref|YP_004297850.1| putative virulence sensor protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325665503|gb|ADZ42147.1| putative virulence sensor protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 1239

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 91/383 (23%), Positives = 170/383 (44%), Gaps = 16/383 (4%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK---PF 497
           R     +   + Q  SI+ A    + I    G +   N   +K     + D+L     P 
Sbjct: 559 RRQAALLHARLRQQESIINALPFAVFIRTAAGELAVYNSHFAKAHQDKLNDLLNHNNEPA 618

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-YSL 556
              +       ++ Y   +L+    Q ++   L      +L  + + I  L  +      
Sbjct: 619 NWPMTSPLDREIDKYCRLVLTHRKPQMVD---LSLEINGELRDIFLWIIPLDNAERSLLG 675

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
              DIS+ K  + +L  A+  AE  +  KS FLA +SHE+RTP+ AI+G  E ++ +   
Sbjct: 676 GWLDISQRKTVERQLEAARVEAESANRTKSTFLATISHELRTPMYAIMGLLE-LEIRSEQ 734

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
           P+           + +S   ++ +++D++D +KIE+G++++H   V   + +    ++ Q
Sbjct: 735 PVD----KNTLVTVSKSAQSLMLLLDDIIDSAKIEAGQLSVHPAVVDFRQEIERMFTIYQ 790

Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSN 734
             A+E+ +       N IP  ++ D+  V+Q+  N+L NA+ FT  G   + I+     +
Sbjct: 791 PIADERNLRFSGWVDNQIPDLVMVDMLRVRQVMGNLLGNALKFTEQGSVSVDITWEAIDD 850

Query: 735 EEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
           +  +  + + DTG+G++        +PF Q       R  G+GLGL +   ++    G+ 
Sbjct: 851 KHGVTNIDITDTGIGISPAAQATLFQPFSQANEGNSPRFGGSGLGLWICHQLIHKMGGEI 910

Query: 793 YIFSTPAKGTLIEIIFPLYDTSH 815
            + S   KGT + I  PL   S 
Sbjct: 911 TLESQLGKGTSLFITLPLEVASA 933


>gi|221126281|ref|XP_002164625.1| PREDICTED: similar to histidine kinase [Hydra magnipapillata]
          Length = 547

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 79/275 (28%), Positives = 130/275 (47%), Gaps = 9/275 (3%)

Query: 538 LLSLRIIIKKLPF-SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
              +   +   P   +     + DI+   + +  + HA + AE+ +  KS FLA +SHEI
Sbjct: 3   WARVSARVFATPDHRNAVLGVLEDITPSYEARQAIEHAHQQAEEANRAKSSFLANMSHEI 62

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTP+ AI+G S +++        N R   Y N I  S   +L I+ND+LD SKIE+GK+ 
Sbjct: 63  RTPMNAIMGMSYLVQKTEL----NERQRGYLNKIQSSSQHLLGIINDILDYSKIEAGKLG 118

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNA 715
           +      LD+ +     LV   A  K + +       +P +++ D   + QI +N  +NA
Sbjct: 119 IEHIEFELDKVLDNLAGLVGDKAASKGLELVFDVDKQVPLQLVGDPLRLGQILVNYANNA 178

Query: 716 IHFTPSGGQ-IIISTTHTSNEEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           + FT  G   I +     S   V+    VRDTG+G++  +     + F Q   S   +  
Sbjct: 179 VKFTERGEIDIRVRVQEESTSHVVLHFAVRDTGIGISEEQKSVLFQSFQQADASTTRKFG 238

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           GTGLGL +++ +     G+  + ST  +G+     
Sbjct: 239 GTGLGLAISRQLAQMMEGEVGVDSTFGQGSTFWFT 273


>gi|251796742|ref|YP_003011473.1| GAF sensor signal transduction histidine kinase [Paenibacillus sp.
           JDR-2]
 gi|247544368|gb|ACT01387.1| GAF sensor signal transduction histidine kinase [Paenibacillus sp.
           JDR-2]
          Length = 595

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 88/330 (26%), Positives = 151/330 (45%), Gaps = 16/330 (4%)

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
               ++FG            + L        +  +  +      +  E     S  +   
Sbjct: 278 HRACEMFGIKSL------LLIPLVAKDRVFGDVVIPTMNKCREYEPGEIEFCQSIADVTA 331

Query: 539 LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
            +L   I        YS+ +  + E +Q   KL    K  E  +  KSDF+A +SHE+RT
Sbjct: 332 TALANAIHTEHLD--YSVNVRSM-ELQQANFKLEGLVKELEYLNELKSDFIATLSHELRT 388

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
           P+TA+ G  ++++ +  G L N   ++      +S   +L+ VN+LLD +K+E+GK  L 
Sbjct: 389 PITAVKGTVDILRKEVLGKL-NDSQLDLLETAGKSIERLLNQVNELLDFAKMENGKFELM 447

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSF-ANNIPRILADLRSVKQIALNILSNAIH 717
           +     +E + EA  +V    N+K++ +     A     + AD   + QI LN+LSN+I 
Sbjct: 448 YSEFDFEELIREATHIVDSLINKKKLELAVEIHAGENRTMRADRERILQILLNLLSNSIK 507

Query: 718 FTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
           FTP  G+I I      NE   + V DTG+G+   + +     F Q+ N       GTGLG
Sbjct: 508 FTPQRGKITIKAYMEDNEM-TIEVIDTGIGIPVEKQKNIFTKFYQVNNQIN----GTGLG 562

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           L +++ +++ + GK    ST  +G++ +  
Sbjct: 563 LAISRQLIEMHGGKISFESTEGEGSVFKFT 592


>gi|37521385|ref|NP_924762.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
           7421]
 gi|35212382|dbj|BAC89757.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
           7421]
          Length = 448

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 74/258 (28%), Positives = 134/258 (51%), Gaps = 5/258 (1%)

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
             + D  E +        ++  AE  +  K +FLA +SHE+RTPL  IIG+++++K    
Sbjct: 181 AIVVDELELRLSLESAEQSRLAAEAANRAKDEFLALLSHELRTPLNPIIGWTQMLKR--- 237

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
           G +   + +E    I+R+  L   ++ DLLD+++IE GK +   +PV L   V  A+  V
Sbjct: 238 GSVAADKQVEVLEIIERNAKLQNQLIQDLLDVARIEQGKFSHRPQPVILSGVVQAAVEAV 297

Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
           +  A +  + +    A  +P ++ D   ++Q+  N+L+NAI FTPSGG + +     + +
Sbjct: 298 RTLAKDAGVALEVEVAERLPEVMVDPTRMQQVVWNLLTNAIKFTPSGGWVQLHL-VEAAD 356

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            + L V D+G G++   +    + F Q  ++   R  G GLGL + + +V+ + G+ +  
Sbjct: 357 CLCLVVSDSGTGISPAFIPHLFERFRQAGDAGTRRQGGLGLGLFIVRYIVELHGGRVWAK 416

Query: 796 S-TPAKGTLIEIIFPLYD 812
           S    KG +  +  PL +
Sbjct: 417 SDGQGKGAVFTVELPLCE 434


>gi|13476392|ref|NP_107962.1| two-component, sensor histidine kinase [Mesorhizobium loti
           MAFF303099]
 gi|14027153|dbj|BAB54107.1| two-component, sensor histidine kinase [Mesorhizobium loti
           MAFF303099]
          Length = 356

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 106/348 (30%), Positives = 171/348 (49%), Gaps = 28/348 (8%)

Query: 484 LFGYPVEDILRKPFTV----FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
           + G     +  +         L               LS      + +     T++  ++
Sbjct: 1   MPGVTRASLEGRMLAFASERRLANTNGPQGGATFERQLSDGRWLQVNE---LKTRDGGIV 57

Query: 540 SLRIIIKKL--------PFSSCYSLTMHDIS-----------EWKQEKNKLSHAKKIAEK 580
           S+   I ++                T+HD+S           E      K     + AE 
Sbjct: 58  SVGSDITQIKLHQEKLVDSERRLMATIHDLSLARRAEEERSRELVDLNRKYMKETERAEA 117

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            +  KS+FLA +SHE+RTPL AIIGFSE+++   FGPLG+ RY EYA  I+ SG  +L +
Sbjct: 118 ANRAKSEFLANMSHELRTPLNAIIGFSELMEQGLFGPLGSARYEEYATDINSSGKYLLGV 177

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILAD 700
           +ND+LD+SKIE+G+ +L  E + L   +SE + +V L A +K I + T  A+ +  + AD
Sbjct: 178 INDILDMSKIEAGQFSLDQEQIDLGPLISETVRVVSLQAAQKAITVETRIADAL-SLFAD 236

Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760
            R++KQI +N+LSNA+ FT  GG I +     ++  ++L + D G G+    L K  +PF
Sbjct: 237 RRAIKQIVINLLSNAVKFTGQGGHISVR-ARNTSGALVLTIEDNGCGIPKEALGKLGRPF 295

Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            Q+ N       G+GLGL +++++ +   G   I ST   GT++ +  
Sbjct: 296 EQVQNQFSKNHAGSGLGLAISRSLAELQGGALKIRSTEGVGTIVSVRI 343


>gi|88858301|ref|ZP_01132943.1| hypothetical protein PTD2_12964 [Pseudoalteromonas tunicata D2]
 gi|88819918|gb|EAR29731.1| hypothetical protein PTD2_12964 [Pseudoalteromonas tunicata D2]
          Length = 884

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 83/260 (31%), Positives = 149/260 (57%), Gaps = 7/260 (2%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E  +  ++L  A   AE+ S  KS FLA +SHEIRTPLTAI+GF+E +  +      + +
Sbjct: 387 ELAKMNHQLEKAMNQAEQASQLKSRFLANMSHEIRTPLTAIMGFTEQMLTKE----PDDK 442

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             ++ N + R+   +L+++N++LD+SKIE+ K+ +  +P+ L + + +  S+V + A +K
Sbjct: 443 KAQHLNTVLRNSKHLLELINNILDLSKIEAEKLEVERQPLELSQLIEDINSVVHVLAQDK 502

Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN-EEVILR 740
            +     +   +PR + +D+  +KQ+ LN+ +NA+ FT  G  + ++ +   +  ++  +
Sbjct: 503 NLTFAVEYDYPLPRTLNSDITRLKQVLLNVCTNAVKFTAEGS-VTLAISAKHSLSQLEFK 561

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V+DTG+GM+N ELE+  KPF Q  +S   +  GTGLGL ++K +     G   + S   +
Sbjct: 562 VQDTGIGMSNQELERIFKPFEQADSSTTRKFGGTGLGLCISKNLAQLLGGDITVTSKQTQ 621

Query: 801 GTLIEIIFPLYDTSHPHDCI 820
           G+   I    ++   P D I
Sbjct: 622 GSCFLITVACHNEHIPVDII 641


>gi|319763168|ref|YP_004127105.1| phosphate regulon sensor kinase phor [Alicycliphilus denitrificans
           BC]
 gi|330825231|ref|YP_004388534.1| PAS/PAC sensor signal transduction histidine kinase [Alicycliphilus
           denitrificans K601]
 gi|317117729|gb|ADV00218.1| phosphate regulon sensor kinase PhoR [Alicycliphilus denitrificans
           BC]
 gi|329310603|gb|AEB85018.1| PAS/PAC sensor signal transduction histidine kinase [Alicycliphilus
           denitrificans K601]
          Length = 458

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 83/426 (19%), Positives = 163/426 (38%), Gaps = 47/426 (11%)

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459
           L  ++ + E + A        A + P     + +              +  + +  + L+
Sbjct: 51  LRWLRQDGEPARA-------PALRGPWGEACDRMRRLLRQREQRAAASDARLQEFLAALQ 103

Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN---HYLTEI 516
           A+ +G+ +++ +G I   N+  ++ FG   E  L +     L     S       Y   +
Sbjct: 104 ASPNGVILLDAQGRIEWCNQTAAQHFGLQAERDLMQSVGNLLRDPAFSNYLAAGDYAQGV 163

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKK 576
           L      +              ++L + +          L+  D++  +Q +        
Sbjct: 164 LLPGRESSAAH----------PVTLSVQLHPYGDGRRLMLS-RDVTALEQAE-------- 204

Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
                 + + DF+A VSHEIRTPLT ++GF E ++     PL       Y   + +    
Sbjct: 205 ------AMRRDFVANVSHEIRTPLTVLVGFVETLQT---LPLQEDERARYLGLMAQQAAR 255

Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY--------ANEKRILI-R 687
           +  +V DLL +S++E        E V +   +       +          A + R +   
Sbjct: 256 MQHLVQDLLTLSRLEGSPPPGMAEWVPVCALLRHCEDEARALSATLARTPAQQHRFVFPT 315

Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747
              A    ++      ++    N+++NA+ +TP+GG I ++    ++      VRDTG G
Sbjct: 316 PGQAQAAGQVAGIAAELQSALANLVNNAVRYTPAGGSITVAWEPLADGGARFTVRDTGPG 375

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           +    L +  + F ++  S+     GTGLGL + K +V  +     I S   +G++  + 
Sbjct: 376 LAPEHLPRITERFYRVDRSRSRDTGGTGLGLAIVKHVVQRHGAALEISSVLGQGSVFGVR 435

Query: 808 FPLYDT 813
           FP    
Sbjct: 436 FPAARV 441



 Score = 45.0 bits (105), Expect = 0.049,   Method: Composition-based stats.
 Identities = 36/306 (11%), Positives = 76/306 (24%), Gaps = 25/306 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +DA G ++  ++   +  G  A + +         + ++  +    + L   +   G   
Sbjct: 112 LDAQGRIEWCNQTAAQHFGLQAERDLMQS------VGNLLRDPAFSNYLAAGDYAQG--V 163

Query: 149 LWPIEGTNLYVPIDLA--ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
           L P   ++   P+ L+    P     R         +           A+ +      SH
Sbjct: 164 LLPGRESSAAHPVTLSVQLHPYGDGRR-------LMLSRDVTALEQAEAMRRDFVANVSH 216

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
                        E       Q        + +   L    A +   L  +   L   E 
Sbjct: 217 EIRTPLTVLVGFVETLQTLPLQE-----DERARYLGLMAQQAARMQHLVQDLLTLSRLEG 271

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
           S  P   ++  +       +     L      +         P+       G+       
Sbjct: 272 SPPPGMAEWVPVCALLRHCEDEARALSATLARTPAQQHRFVFPTPGQAQAAGQVAGIAAE 331

Query: 327 DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
            +  +   V +        P+   +T          A             ++        
Sbjct: 332 LQSALANLVNNA---VRYTPAGGSITVAWEPLADGGARFTVRDTGPGLAPEHLPRITERF 388

Query: 387 YRSDRT 392
           YR DR+
Sbjct: 389 YRVDRS 394



 Score = 40.4 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 19/238 (7%), Positives = 53/238 (22%), Gaps = 8/238 (3%)

Query: 225 FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYT 284
              +            ++                   L     S         +  +   
Sbjct: 1   MPWRFAIFLCAQALGAAAGGWAAGPWGLAAGVALASWLCWGWESWQGLRVLRWLRQDGEP 60

Query: 285 KK-QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLF 342
            +          + +    L  +      A  D         +   P    +    G + 
Sbjct: 61  ARAPALRGPWGEACDRMRRLLRQREQRA-AASDARLQEFLAALQASPNGVILLDAQGRIE 119

Query: 343 YANPSFLLLTKYKSVDDIEIAGG---LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399
           + N +       ++  D+  + G             + + A   ++  R        +  
Sbjct: 120 WCNQTAAQHFGLQAERDLMQSVGNLLRDPAFSNYLAAGDYAQGVLLPGRESSAAHPVTLS 179

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
           +    +     L +       A +  E M ++ +     + R     +   V  L ++
Sbjct: 180 VQLHPYGDGRRLML--SRDVTALEQAEAMRRDFVANVSHEIRTPLTVLVGFVETLQTL 235


>gi|213498009|emb|CAR92188.1| PhoR protein [Serratia sp. ATCC 39006]
          Length = 440

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 61/358 (17%), Positives = 131/358 (36%), Gaps = 35/358 (9%)

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
           +  S  E+  D + I   EG ++  NR    L G+   +   +     L     +     
Sbjct: 99  RFRSGAESLPDAVVITTEEGTMIWCNRLAQHLLGFRWPEDNGQNILNLLRYPEFTEYMQL 158

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572
                     +      +        +  R++           +   D+++ +Q +    
Sbjct: 159 ----------RDFSGPLMLLLNNSYHVEFRVMPY---SEGQLLIVARDVTQMRQLEG--- 202

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
                       + +F A VSHE+RTPLT + G+ E++ ++           +  N +  
Sbjct: 203 -----------ARRNFFANVSHELRTPLTVLQGYLEMMSDESLDATL---QAKALNTMQE 248

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN-EKRILIRTSFA 691
               +  +V  LL +S+IE+       E V +   +       +  +     I+ R +  
Sbjct: 249 QTRRMDGLVKQLLTLSRIEAATAIDLSEEVDIPLMLRVLQREAETLSQGRHEIIFRVN-- 306

Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751
               ++  +   ++    N++ NA++ TP G +I +    T +     +V D G G+   
Sbjct: 307 -EQLKVFGNEDQLRSAVSNLVYNAVNHTPKGTRIEVCWQQTPSG-AQFQVSDNGPGIAPK 364

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            L +  + F ++  ++  +  G+GLGL + K  +  +  +  + S    G+      P
Sbjct: 365 HLPRLTERFYRVDKARSRQTGGSGLGLAIVKHALGHHDSRLEVISEEGIGSRFMFTLP 422


>gi|194477156|ref|YP_002049335.1| multi-sensor signal transduction histidine kinase [Paulinella
           chromatophora]
 gi|171192163|gb|ACB43125.1| multi-sensor signal transduction histidine kinase [Paulinella
           chromatophora]
          Length = 696

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 78/430 (18%), Positives = 175/430 (40%), Gaps = 41/430 (9%)

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
            +    +      +  +          + E  +    +     +V Q  S++   +DG  
Sbjct: 252 GDFQARIVLSVSGELGELVNGFNDMASQLEVYERANIEEVTAAQVKQ-QSLIATMADGAV 310

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
           +++  G I+  N    +LF +   ++  +     L       ++  L  +++     T  
Sbjct: 311 LLDAFGRIVLANPTARRLFHWEGRNLEGQDLVKELPTALALELSAPLIALVNGSKDITDV 370

Query: 527 KITLGS-TKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
           +   G   +  +++   +           ++T+ D++                 + ++ +
Sbjct: 371 RCKSGKPVRTLRIVLQSVKDASGTTVKGIAMTIQDLTR--------------EVELNAAQ 416

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
           + F++ VSHE+RTPL  I  + E + + +   L      E+ +  +   + +  +VN++L
Sbjct: 417 NRFISNVSHELRTPLFNIKSYVETLYDLK-DQLSEKEKNEFLSIANEETDRLTRLVNNIL 475

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
           D+SK+ESG++ + FE + L  A+ + +   +L A +K + +     +N  +IL +   + 
Sbjct: 476 DLSKLESGRV-VSFEIMELKPAMDQTLRNYRLNAKDKSVELVLDAYSNELKILGNWDLLL 534

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSN----------------------EEVILRVRD 743
           Q   N++ NA+ FT +GG++I+ T                             + + + D
Sbjct: 535 QAINNLVGNALKFTENGGRLILKTYPWPEVNSIFKLIPTSNRNSHKLNQISRMMRVEIAD 594

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TG G++  +     + F ++ N+      GTGLGL + + +V+ +     + S P  GT 
Sbjct: 595 TGCGISLQDQSHIFERFYRVENTVHTET-GTGLGLSIVRGIVEKHSSCIKVVSKPGVGTT 653

Query: 804 IEIIFPLYDT 813
                 L D+
Sbjct: 654 FWFDLTLEDS 663


>gi|192292822|ref|YP_001993427.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris
            TIE-1]
 gi|192286571|gb|ACF02952.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris
            TIE-1]
          Length = 1415

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 102/694 (14%), Positives = 221/694 (31%), Gaps = 38/694 (5%)

Query: 139  RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
            R   +  +   W  EG +  +P    A  +   +   +G     +   N    D  A   
Sbjct: 603  RAQAYLDEAIGWLDEGGDADLPAASGAQDLGIVSAPAAGRPHILLADDNHDMRDYVARLL 662

Query: 199  RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
                +   + +      +V+K + D+       P L     + +L    A  D  +    
Sbjct: 663  GDAYEVEAVGDGVAALEAVKKRRPDLVLSDVMMPRLDGLGLLKALRSDPAVADLPVIFLS 722

Query: 259  YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
                   +    E      ++     ++       N    +    + R   +L       
Sbjct: 723  ARAGEEAKLEGLEAGADDYLSKPFSARELLTRVRANLDTAAIRRTALRTEYALRQEAQAA 782

Query: 319  ENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGG--LSTLLDAPKL 375
                   +      F          Y N +   L    + + I          +L     
Sbjct: 783  RQHAEGILASISDGFIALDEQYRFTYVNAAAERLIASTAGELIGKVYWDVYPMMLGTKIE 842

Query: 376  SDNNAIKPVMLYRSDRTCIAASARLHTIQWN--RENSLAMTFIPFEKANQFPENMPQNGI 433
                      +     +    S R   ++       S+++ F    +  +    +     
Sbjct: 843  QAYRRAMTERVACEFESYHPPSKRWFELRVAPTNGKSISVYFRDITEQKKAEAALRDINE 902

Query: 434  EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
            + E+        +++ +  +L +I  A+    A+++ +G++L  NR      G  +ED++
Sbjct: 903  QLEE-QVAERTAELQQKEARLRTIFAASYTYQALLDVDGVVLDANRTSLAGIGGQLEDVI 961

Query: 494  RKPFTVFLEQNTPSVMNHYLT---EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
             KP        +   +   +     +++       E          +   L++   + P 
Sbjct: 962  GKPVWATPWFGSTPGLPEMIRSDIAVVAAGETVRRELHVNLPAGGWRWFDLQMRPVQDPQ 1021

Query: 551  SSCYSLT--MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                ++     DI+E ++ +     A+K+              V+H+    LT I   ++
Sbjct: 1022 GQVIAIVPEAVDITERRKAEEAFRQAQKM-----EAIGQLTGGVAHDFNNMLTVIRSSAD 1076

Query: 609  VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
            +++ +   P    R   Y + I  + +    +   LL  ++  +     + E     E +
Sbjct: 1077 LLRRRELPP---ERVRRYVDAISDTADRAAKLTGQLLTFARRHAQ----NREVFDAAEHI 1129

Query: 669  SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
             +   +++  A   R +     A     + AD        +N+++NA       G + +S
Sbjct: 1130 EDVSDMLKT-ALGSRAVFNLDIAERPLPVEADTNQFDAALVNLVANARDAMDGHGTLTVS 1188

Query: 729  TTHTS----------NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
             T ++             V + + DTG G+   ++E+  +PF    +     G GTGLGL
Sbjct: 1189 VTRSAPTPQEAAAGSRGFVEVSIADTGCGIPREQIERIFEPFFTTKD----IGRGTGLGL 1244

Query: 779  PLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
                  V  + G   + S    GT I +  PL D
Sbjct: 1245 SQVYGFVQQSGGTINVDSAIGCGTTITLRLPLSD 1278



 Score =  264 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 94/592 (15%), Positives = 183/592 (30%), Gaps = 51/592 (8%)

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
            E      +          F      +     +        L   + +        +   
Sbjct: 2   AEDTPGGHLGRIDAVPDSLFLGRGELASLMRAFDWASTPIGLPESWPQALKTAVRIMLTS 61

Query: 330 PIPFFVYSHGNLFY-ANPSFLLLTKYKSVDDIEIA---------GGLSTLLDAPKLSDNN 379
             P ++     L Y  N  +  +   K    +              ++ LL         
Sbjct: 62  QQPIWIGWGTELTYLYNDPYKSIIGGKHPWALGRPTSEVWSEIWEDIAPLLAKATSGHEG 121

Query: 380 AIKPVMLYRSDRTCIAASARL----HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
                 L   +R               I  +  +   + F       Q      Q  +  
Sbjct: 122 TYVEAQLLIMERNGFPEETYYTFSYSPIPTDDGSPGGI-FCANTDDTQRVITERQLSLLR 180

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSD-----GIAIINREGII--------LSTNRAV- 481
           +   +    R +     +  + L           I + +  G          +  +    
Sbjct: 181 DLAASAAESRSVGQACERSAAALATDPQDLPFALIYLTDLGGGHAELAASSGIDASHPAV 240

Query: 482 ---SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL------GS 532
                L G      + + F +      P + + +     +   RQ   +  +      G 
Sbjct: 241 KPTLALAGGDEPWPVAEAFRLNAPVVVPDLRDRFGVAFPTGGWRQPPTRAVVLPIPASGD 300

Query: 533 TKEEKLLSLRIIIKKLPFS--SCYSLTMH-----DISEWKQEKNKLSHAKKIAEKESSHK 585
           T    LL   +   +L  S    +   +       I+     + +   A +   +    K
Sbjct: 301 TGRSGLLIAGLNPFRLYDSAYQDFLALVSGQISSAITNADAYQEERRRA-EALAEIDRAK 359

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
           + F + VSHE RTPLT ++   E    +                  R+G  +L +VN LL
Sbjct: 360 TAFFSNVSHEFRTPLTLMLSPLEEALGRDGIA---DEQRTLLGIAHRNGLRLLKLVNTLL 416

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
           D ++IE+G++  HF PV L    +E  S  +   +   +            +  D    +
Sbjct: 417 DFARIEAGRVTAHFTPVDLSSFTAELASNFRSALDRAGLRFVIEAPPLPQPVYVDRDMWE 476

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNE-EVILRVRDTGVGMTNYELEKAMKPFGQIP 764
           +I LN+LSNA  FT  G +I++      +    ++ V DTG G+   E+    + F ++ 
Sbjct: 477 KIVLNLLSNAFKFTFEG-EIVVRVGPDPDGRHAVIEVSDTGTGIPEAEIPHLFERFRRVE 535

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
            ++    EG+G+GL L + ++  + G   + S   +G+   +  P      P
Sbjct: 536 GARGRSIEGSGIGLALVQELIKLHSGSIDVESEIGRGSTFRVTLPFGSAHLP 587



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 32/346 (9%), Positives = 75/346 (21%), Gaps = 20/346 (5%)

Query: 97  EISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL--KRQNTWYGKTTLWPIEG 154
             ++     IG      +G    +V   +  D    +              +  +    G
Sbjct: 76  LYNDPYKSIIGGKHPWALGRPTSEVWSEIWEDIAPLLAKATSGHEGTYVEAQLLIMERNG 135

Query: 155 TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214
                    +  PI + +    G   F     +            L    +   E +   
Sbjct: 136 FPEETYYTFSYSPIPTDDGSPGGI--FCANTDDTQRVITERQLSLLRDLAASAAESRSVG 193

Query: 215 SSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQED 274
            + E+    + +     P   +                 +      +  +   +    E 
Sbjct: 194 QACERSAAALATDPQDLPFALIYLTDLGGGHAELAASSGIDASHPAVKPTLALA-GGDEP 252

Query: 275 FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF 334
           +      +         L++    +F     R  P+ +          P + D       
Sbjct: 253 WPVAEAFRLNAPVVVPDLRDRFGVAFPTGGWRQPPTRAVVLP-----IPASGDTGRSGLL 307

Query: 335 VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394
           +         + ++       S       G +S+ +           +   L   DR   
Sbjct: 308 IAGLNPFRLYDSAYQDFLALVS-------GQISSAITNADAYQEERRRAEALAEIDRAKT 360

Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
           A       +       L +   P E+A        +          
Sbjct: 361 AF---FSNVSHEFRTPLTLMLSPLEEALGRDGIADEQRTLLGIAHR 403



 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/353 (7%), Positives = 83/353 (23%), Gaps = 23/353 (6%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD-ILHIDPNNHIGDLLKRQNTWYGKT 147
            +D       ++    + I + A ++IG    DV   +L           +  +     ++
Sbjct: 800  LDEQYRFTYVNAAAERLIASTAGELIGKVYWDVYPMMLGTKIEQAYRRAMTERVACEFES 859

Query: 148  TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
               P          +L   P   ++                      A  + ++++    
Sbjct: 860  YHPPS-----KRWFELRVAPTNGKSISV-------YFRDITEQKKAEAALRDINEQLEEQ 907

Query: 208  HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
               +      ++ +       S      + +    + +        +  +   ++     
Sbjct: 908  VAERTAELQQKEARLRTIFAASYTYQALL-DVDGVVLDANRTSLAGIGGQLEDVIGKPVW 966

Query: 268  SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
            + P       +     +        +   +E    L               ++   + + 
Sbjct: 967  ATPWFGSTPGLPEMIRSDIAVVAAGETVRRELHVNLPAGGWRWFDLQMRPVQDPQGQVIA 1026

Query: 328  KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIA-GGLSTLLDAPKLSDNNAIKPVML 386
              P    +        A      +      + I    GG++   +             +L
Sbjct: 1027 IVPEAVDITERRKAEEAFRQAQKM------EAIGQLTGGVAHDFNNMLTV--IRSSADLL 1078

Query: 387  YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
             R +         +  I    + +  +T      A +  +N           D
Sbjct: 1079 RRRELPPERVRRYVDAISDTADRAAKLTGQLLTFARRHAQNREVFDAAEHIED 1131


>gi|153834633|ref|ZP_01987300.1| phosphate regulon sensor kinase PhoR [Vibrio harveyi HY01]
 gi|148868945|gb|EDL67999.1| phosphate regulon sensor kinase PhoR [Vibrio harveyi HY01]
          Length = 432

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 71/364 (19%), Positives = 149/364 (40%), Gaps = 29/364 (7%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           ++   + +  +  E+  D + +   EG I+  N+    L G+   +   +P +  +    
Sbjct: 92  ELTNLIRRFRNGAESLPDAVVVFRAEGNIVWCNKLAQHLLGFHWPEDSGQPISNLIRTPD 151

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
                +       L++R  L    +          L + I        + + + D+S+ K
Sbjct: 152 FIKYINKQDFSEPLEMRSPLNVERM----------LELRIVPYTEGE-HLMVVRDVSQLK 200

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           Q +                + +F A VSHE+RTP+T + G+ E+   +    +  P + +
Sbjct: 201 QLEG--------------MRRNFFANVSHELRTPMTVLQGYLEM--TEDPDMIVGPMWTK 244

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
               +    N +  +VN LL +SKIE+  M+   + V++   +          + + +  
Sbjct: 245 AHGVMTEQLNRMNSLVNQLLTLSKIEAAPMHELEDVVNVPSMLEVLEKEAVSLSGDDKHK 304

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           ++    +++ R+L D   ++    N++ NA+ +TP G  I +    T+     L V D+G
Sbjct: 305 LKFDVDSSL-RVLGDDDQLRSAISNLVYNAVKYTPPGAHINVRWYQTAQG-ACLEVEDSG 362

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
            G+    L +  + F ++  ++     G+GLGL + K  +  +     I+S    G+   
Sbjct: 363 DGIEPQHLHRLTERFYRVDKARSRDTGGSGLGLAIVKHALSHHDSHLEIYSEVGVGSKFS 422

Query: 806 IIFP 809
            I P
Sbjct: 423 FILP 426


>gi|28377604|ref|NP_784496.1| histidine protein kinase; sensor protein [Lactobacillus plantarum
           WCFS1]
 gi|28270437|emb|CAD63339.1| histidine protein kinase; sensor protein [Lactobacillus plantarum
           WCFS1]
          Length = 467

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 76/403 (18%), Positives = 171/403 (42%), Gaps = 26/403 (6%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
                  P       +   +   +   R+ E++  +L  I+     G+ +I+    +  +
Sbjct: 88  ILLPQSDPLYSLAQAVNQLESYQKSQTRRAELQEKELMMIMRYLPVGVMVIDHRRQVQLS 147

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
           N A+S+L    V  +      ++ +      +   + + ++    Q      +      +
Sbjct: 148 NPAMSELLQVSVNTVA----HIYTKDIQLYALTKLIEDTITSGKNQRATITLI-PAPNTQ 202

Query: 538 LLSLRIIIKKLPFSS-CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
           ++    +  +   S     L ++DI+E    +                + DF++  SHE+
Sbjct: 203 VVEASTVYIQGNRSQFQIVLMLYDITEVYMIE--------------QMQDDFVSNASHEL 248

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           +TP+TAI GF+E + +            ++ + I      ++D++ D+L +S+I +    
Sbjct: 249 KTPITAISGFTETLLSGAKD--DPDTLDQFLHIIADESQRLIDLIQDVLSLSRIRAQNTT 306

Query: 657 -LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715
            L   P+++   + + +++VQ     + + I      ++  I +D + + QI  N+L+NA
Sbjct: 307 MLTLAPLAVRPLIEQELAVVQQAIERQHLTINNQVDADL-MITSDSQKLSQIIKNLLTNA 365

Query: 716 IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGT 774
           I +    G + I+T  +      L V+DTG+G++  + ++  + F +   S+  +   GT
Sbjct: 366 IKYNRPHGSVTIATMVSHQTW-SLIVKDTGIGISADDQQRIFERFYRASPSRSQQLVSGT 424

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
           GLGL + + +V+A  G   + S    GT + +  PL  ++   
Sbjct: 425 GLGLAIVQELVNAMHGTIDVVSQRGVGTTMTVTLPLVASASEQ 467


>gi|299532291|ref|ZP_07045684.1| PAS/PAC sensor signal transduction histidine kinase [Comamonas
           testosteroni S44]
 gi|298719699|gb|EFI60663.1| PAS/PAC sensor signal transduction histidine kinase [Comamonas
           testosteroni S44]
          Length = 458

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 82/452 (18%), Positives = 172/452 (38%), Gaps = 47/452 (10%)

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
           ++    +    +       I          WN    L         A      +      
Sbjct: 20  VAPGATVLQQCVAAMTGALIGGWIWWLVDSWNGARLLHWLRQSELGAVPNLAGIWGEASV 79

Query: 435 PEDVDTRINKRKMEIEVMQLCSIL---EATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
                 R + ++++    +L  IL   +A+ +G+ +++ +G I   N+  +K FG+  E 
Sbjct: 80  RMRRWIRQSVQQVQQGDQRLNDILSALQASPNGVVLLDAQGRIEWCNQISAKQFGFDAER 139

Query: 492 ILRKPFTVFLEQNTPSVM---NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            + +     +     S       +  +++      T  +             +++ ++  
Sbjct: 140 DVLQSIGNLVRDPQFSAYFAAQDFSHDLVMQGRESTPSR------------PVKLSVQLY 187

Query: 549 PFSSCY-SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
            +      L   D++  +Q +              + + DF+A VSHEIRTPLT + GF 
Sbjct: 188 GYGEGRKLLLARDVTALEQAE--------------AMRRDFVANVSHEIRTPLTVLAGFV 233

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
           E ++N    PL       Y   + +    +  +V DLL +S++E   +  + + VS+ + 
Sbjct: 234 ETLQN---LPLEEDERRRYLELMAQQAERMQHLVEDLLTLSRLEGSPLPSNNDWVSVAQL 290

Query: 668 VSEAISLVQ------LYANEKRILIRTSFANNIPRILAD----LRSVKQIALNILSNAIH 717
           ++   +  +           K  ++       + +   D       +     N+L+NA+ 
Sbjct: 291 LNRCENEARGLSNALTRKQAKPHVLNFPDEQALRQA-GDLAGASAELHSAFSNLLANAMR 349

Query: 718 FTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
           +TP+GGQI +      +      V+D+G G+    + +  + F ++  S+     GTGLG
Sbjct: 350 YTPAGGQIDVRWQLLPDGSARFAVKDSGPGIDEKHVSRLTERFYRVDRSRSRDTGGTGLG 409

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           L + K ++  +  +  I S   KG+   + FP
Sbjct: 410 LAIVKHVLQRHGARLSIESELGKGSEFAVTFP 441



 Score = 38.1 bits (87), Expect = 7.1,   Method: Composition-based stats.
 Identities = 36/326 (11%), Positives = 78/326 (23%), Gaps = 23/326 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +DA G ++  ++   K  G  A + +   +       ++  +         Q+ +     
Sbjct: 116 LDAQGRIEWCNQISAKQFGFDAERDVLQSI------GNLVRDPQFSAYFAAQD-FSHDLV 168

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           +   E T    P+ L+              R   +           A+ +      SH  
Sbjct: 169 MQGRESTPSR-PVKLSVQLYGYGEG-----RKLLLARDVTALEQAEAMRRDFVANVSHEI 222

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
                  +   E       +        + +   L    A +   L  +   L   E S 
Sbjct: 223 RTPLTVLAGFVETLQNLPLEE-----DERRRYLELMAQQAERMQHLVEDLLTLSRLEGSP 277

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
           LP   D+ ++       +     L N            N P   A    G+         
Sbjct: 278 LPSNNDWVSVAQLLNRCENEARGLSNALTRKQAKPHVLNFPDEQALRQAGDLAGASAELH 337

Query: 329 CPIPFFVYSHGNLFYANPSFLLLT-----KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
                 + +      A     +               +   G+     +        +  
Sbjct: 338 SAFSNLLANAMRYTPAGGQIDVRWQLLPDGSARFAVKDSGPGIDEKHVSRLTERFYRVDR 397

Query: 384 VMLYRSDRTCIAASARLHTIQWNREN 409
                +  T +  +   H +Q +   
Sbjct: 398 SRSRDTGGTGLGLAIVKHVLQRHGAR 423


>gi|78187853|ref|YP_375896.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium luteolum DSM
           273]
 gi|78167755|gb|ABB24853.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium luteolum DSM
           273]
          Length = 814

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 93/696 (13%), Positives = 209/696 (30%), Gaps = 58/696 (8%)

Query: 154 GTNLYVPIDLAALPIYSRNR--EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
           G+       ++ +P ++R      +   G  I+     +    A        F  L +  
Sbjct: 3   GSLNVASHTISQVPGFARKALETVTAHIGAAIIQARHEEEIATAKT-----NFEVLFDTI 57

Query: 212 KGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEKYPLLTSE-ESS 268
                +      +               +++      + H ++  K  +  +      + 
Sbjct: 58  DDFLFIVDMDGLVIHTNETVRQRLGYSTDELQGCHVLHFHPEEQRKEAEANITAMLKGTG 117

Query: 269 LPEQEDFHTINLNQYTKKQYFGTL--QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
                   T +      +         +                      E E    E  
Sbjct: 118 DACLVPLRTKSGELIPVETRVTPGTWNSRPVLFGTSRDMSERMRAEETLMESERRFRELT 177

Query: 327 DKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
           +  P+P F +   G + Y+N     +  Y   ++      ++    A +          M
Sbjct: 178 EFLPLPLFEINRQGMVTYSNNKSTEVFGYT-KEEFADNFPVARFTVAEERDRALLNMSQM 236

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
           L        A S      + +      + +       Q        GI  +  D +  + 
Sbjct: 237 LA---GQRPANSTEYGATKKDGSRIPMLLYS--SPIMQEGVIKGIRGIAIDLTDLKQAED 291

Query: 446 KME------IEVMQLCSILEATSDGIAIINREGI--ILSTNRAVSKLFGYPVEDILRKPF 497
            +         V +  ++++     +  INREG   ILS        F     +      
Sbjct: 292 ALRNIAIQQRLVSEFQALIDNIPGAVYRINREGKTVILSMVDDFQNEFSKERFEAELFNE 351

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYS 555
              +  +    +      I      +TL    + ++   + +  R           +   
Sbjct: 352 PSIIHPDDLEAVLGSNRTIGESGTSETLTYRIISASGTVRWIEDRRTPAFGEDGTFNGID 411

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKS--DFLARVSHEIRTPLTAIIGFSEVIKNQ 613
             + DI+E  + +      +         ++       ++H+    LT ++G++E+    
Sbjct: 412 GILFDITERVRIQEDKRELESRLRNTQRLETIGTLAGGIAHDFNNILTPVLGYAEM---G 468

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
                      +Y   I ++     ++V+ +L  S+ +          V++   ++EA+ 
Sbjct: 469 ALEVPVENHLRDYFREIVQAAERAKNLVSQILTFSRAQ----ESEATAVNMQSIITEALK 524

Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS-GGQIIIST--- 729
           L++       I I+ +       ILAD   + Q+ +N+ +NA       GG + +     
Sbjct: 525 LLRPSIPS-TITIKRNLDQKCGNILADPSQIHQVIVNLCTNAFQAMEQSGGTLSLELGEI 583

Query: 730 -----------THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
                             + L + DTG GM    +E+  +PF    +      +GTGLGL
Sbjct: 584 APGSERLKMFPRLEQLNCIHLSITDTGSGMDEATMERIFEPFFTTKS----VNKGTGLGL 639

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
            +   ++ +  G+  + S P  G    +  P+ +  
Sbjct: 640 SVVHGIITSYNGEITVESQPGIGATFHVYLPVINEE 675



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 43/454 (9%), Positives = 112/454 (24%), Gaps = 44/454 (9%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNT 142
           F + +D  G +   +E + + +G    ++ G  +                I  +LK    
Sbjct: 60  FLFIVDMDGLVIHTNETVRQRLGYSTDELQGCHVLHF-HPEEQRKEAEANITAMLKGTG- 117

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
                 +     +   +P++    P    +R       FG                  ++
Sbjct: 118 --DACLVPLRTKSGELIPVETRVTPGTWNSRPVL----FGTSRDMSERMRAEETLMESER 171

Query: 203 KFSHLHEIKKGHS-SVEKEKYDIFSQQSPPPH-----LRMKNKVSSLTEYYAHKDDVLKT 256
           +F  L E        + ++    +S                +         A + D    
Sbjct: 172 RFRELTEFLPLPLFEINRQGMVTYSNNKSTEVFGYTKEEFADNFPVARFTVAEERDRALL 231

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYT---------KKQYFGTLQNNSKESFEYLSHRN 307
               +L  +  +   +      + ++           ++     ++  + +  +     +
Sbjct: 232 NMSQMLAGQRPANSTEYGATKKDGSRIPMLLYSSPIMQEGVIKGIRGIAIDLTDLKQAED 291

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGN--LFYANPSFLLLTKYKSVDDIEIAG 364
                A      +     +D  P   + +   G   +      F      +  +      
Sbjct: 292 ALRNIAIQQRLVSEFQALIDNIPGAVYRINREGKTVILSMVDDFQNEFSKERFEA----- 346

Query: 365 GLSTLLDAPK-LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
               L + P  +  ++    +   R+      +    + I         +         +
Sbjct: 347 ---ELFNEPSIIHPDDLEAVLGSNRTIGESGTSETLTYRIISASGTVRWIEDRRTPAFGE 403

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI--LEATSDGIAIINREGIILSTNRAV 481
                  +GI  +  +    +        +L +   LE            GI    N  +
Sbjct: 404 DGTFNGIDGILFDITERVRIQEDKRELESRLRNTQRLETIGTL-----AGGIAHDFNNIL 458

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           + + GY     L  P    L      ++      
Sbjct: 459 TPVLGYAEMGALEVPVENHLRDYFREIVQAAERA 492



 Score = 41.6 bits (96), Expect = 0.52,   Method: Composition-based stats.
 Identities = 30/286 (10%), Positives = 76/286 (26%), Gaps = 14/286 (4%)

Query: 86  TWNIDAHGYLKEIS--EELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTW 143
            + I+  G    +S  ++         F+        +     ++        +    T 
Sbjct: 317 VYRINREGKTVILSMVDDFQNEFSKERFEAELFNEPSIIHPDDLEAVLGSNRTIGESGTS 376

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
              T    I  +     I+    P +  +  F+G  G  I+         +   + L+ +
Sbjct: 377 ETLTYRI-ISASGTVRWIEDRRTPAFGEDGTFNGIDG--ILFDITERVRIQEDKRELESR 433

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
             +   ++   +      +D  +  +P         +    E +         +      
Sbjct: 434 LRNTQRLETIGTLAGGIAHDFNNILTPVLGYAEMGALEVPVENHLRDYFREIVQAAERAK 493

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
           +  S +                      +Q+   E+ + L      +++   +  +    
Sbjct: 494 NLVSQILTFSRAQESEATAV-------NMQSIITEALKLLRPSIPSTITIKRNLDQKCGN 546

Query: 324 ETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
              D   I   + +      A  +        S++  EIA G   L
Sbjct: 547 ILADPSQIHQVIVNL--CTNAFQAMEQSGGTLSLELGEIAPGSERL 590


>gi|332992705|gb|AEF02760.1| sensory box histidine kinase/response regulator [Alteromonas sp.
           SN2]
          Length = 929

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 77/245 (31%), Positives = 130/245 (53%), Gaps = 7/245 (2%)

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           ++K +L       +  +  KS+FLAR+SHEIRTP+ AI+G    +       + N     
Sbjct: 400 KQKRELRELALNLQNATDAKSEFLARMSHEIRTPVNAIVG----LTKLTQKSVVNEEQKT 455

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
             + I++S   +L ++ND+LD SKIE+GK+N+  E   LD+ V + I L  + A EKRI 
Sbjct: 456 NLSQIEQSSQTLLGVINDVLDFSKIEAGKLNIESEVFELDKLVEQVIRLHGINAKEKRIE 515

Query: 686 IRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNE-EVILRVR 742
           +    A ++P ++  D   ++Q+  N+LSNAI FT  G   + ++  ++ +   +   V+
Sbjct: 516 LLQYVARDVPLQVSGDALRIEQVLNNLLSNAIKFTDEGMVFVSVNKKYSEHGVLLEFSVK 575

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG+G++  ++E     F Q   S   +  GTGLGL + K +V    G+ ++ S   +G 
Sbjct: 576 DTGIGLSTNQIESLFDAFTQADESITRKYGGTGLGLSICKHLVSLMGGEIWVESKLGQGA 635

Query: 803 LIEII 807
                
Sbjct: 636 TFFFT 640


>gi|315497659|ref|YP_004086463.1| integral membrane sensor signal transduction histidine kinase
           [Asticcacaulis excentricus CB 48]
 gi|315415671|gb|ADU12312.1| integral membrane sensor signal transduction histidine kinase
           [Asticcacaulis excentricus CB 48]
          Length = 598

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 113/423 (26%), Positives = 192/423 (45%), Gaps = 15/423 (3%)

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAM-----TFIPFEKANQFPENMPQNGIEPEDVD 439
                    ++ +  L  I ++      +     +F     A           + P    
Sbjct: 123 RRLILLGAALSVAVTLFAILFSLMRLFPLPDIVESFWLSSVAVITLVTGLGLSLLPALRM 182

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
                R +E + ++  ++L      I +++ EG +LS         G  +  +++     
Sbjct: 183 RTEAVRGVEHDRIRFLTLLSEQPHLIIVVDGEGRLLSA--YGETPPGLDMALLMKHGLIT 240

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH 559
                    +   L            E   +     +  + L +   +          + 
Sbjct: 241 CAHVPHRLGLMQALEAAQDTGRA---EAGFMPHAALDHFIRLNL---RRGADGKLYGVLS 294

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           D S     +++L  A++ A+  +  KS FLA +SHE+RTPL A+IGFS++++ Q FGPL 
Sbjct: 295 DASLQHAREDELETARQEAQALNEGKSRFLAGMSHELRTPLNAVIGFSDIMRQQMFGPLT 354

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
             +Y EY+  I  SG  VLD+VND+LD+SKIE+ +  L  E     E VS A+ L+   A
Sbjct: 355 G-KYAEYSQLIWESGQHVLDLVNDVLDMSKIEASRYELSLERFDAREPVSAALRLILATA 413

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
           +EK + +++        + AD R++KQ+ LN+LSNA+ FTP GG I +  + T    + +
Sbjct: 414 HEKGVTVKSVLPPTPLEVTADKRAIKQMCLNLLSNAVKFTPQGGTITLMLSETGQHSIDI 473

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
           ++ DTGVG+   +L++  KP+ Q    +Q    GTGLGL L +A+   + G+  I S   
Sbjct: 474 QITDTGVGIAPEDLKRLGKPYEQSGPMEQRAM-GTGLGLSLVQALAGLHRGRMTIESELG 532

Query: 800 KGT 802
            GT
Sbjct: 533 VGT 535


>gi|124003503|ref|ZP_01688352.1| two-component system sensor histidine kinase/response regulator,
            hybrid, putative [Microscilla marina ATCC 23134]
 gi|123991072|gb|EAY30524.1| two-component system sensor histidine kinase/response regulator,
            hybrid, putative [Microscilla marina ATCC 23134]
          Length = 1356

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 76/260 (29%), Positives = 130/260 (50%), Gaps = 5/260 (1%)

Query: 556  LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
            + +    E  Q+K +++   +  +  +  +S+F + +SHE+RTPLT I+  +E +     
Sbjct: 809  VVVQRTYELAQQKEEIASQAEKLKVLNQVQSNFFSGISHELRTPLTLIVEPAEKLLQYNQ 868

Query: 616  GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
               G      Y   I  +   +L ++N L+D SK+ESGKM L     SL + + E I+  
Sbjct: 869  EEPG----KRYTQTILGNAQRLLRLINQLMDFSKLESGKMTLQLSNNSLYQLLVEVIASF 924

Query: 676  QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
            +L A +K I ++ + +N       D   V+++  N++SNA+ FTP+ G I +    + + 
Sbjct: 925  ELLAQQKNIELKLTASNQALHYKFDHDKVEKVVFNLISNALKFTPTQGNIEVHLWQSPD- 983

Query: 736  EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            EV + V DTG+G+   +L      F Q+  S      GTG+GL L K +V+ + G   + 
Sbjct: 984  EVKITVTDTGIGIAPADLPFVFDRFYQVDGSTTKNYPGTGIGLALVKELVELHEGSIEVT 1043

Query: 796  STPAKGTLIEIIFPLYDTSH 815
            S   KG+   + FP    S 
Sbjct: 1044 SQENKGSTFVVKFPFTSVSA 1063


>gi|119491241|ref|XP_001263209.1| sensor histidine kinase/response regulator, putative [Neosartorya
            fischeri NRRL 181]
 gi|119411369|gb|EAW21312.1| sensor histidine kinase/response regulator, putative [Neosartorya
            fischeri NRRL 181]
          Length = 2332

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 77/251 (30%), Positives = 127/251 (50%), Gaps = 12/251 (4%)

Query: 565  KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
            K  + +  H  K+ E  +  KS FLA +SH++RTP+  +IG SE++K        N    
Sbjct: 1867 KVAEAEAKHNVKLKEDAARAKSIFLANISHDLRTPMNGVIGLSELLKGTNL----NKEQD 1922

Query: 625  EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
            EY   I    + +L ++ND+LD SK+E+GKM +   P+++ E +SE +  ++    ++ +
Sbjct: 1923 EYVESIRVCADTLLTLINDILDFSKLEAGKMKISTVPLNVKETISEVVRALRYTHRDRGL 1982

Query: 685  LIRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIIS--TTHTSNEEVILR 740
            +         P   +L D   + QI +N+LSN+  FTP G  I +    +      V L 
Sbjct: 1983 VTIEDLDKVPPDLVVLGDPVRLHQIFMNLLSNSYKFTPKGS-ITVRAKVSREGKNRVRLE 2041

Query: 741  --VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA-NMGKFYIFST 797
              V DTG+G+   +  +  KPF Q  +S      G+GLGL + KA+++    G  ++ ST
Sbjct: 2042 CAVSDTGIGIPEEQKSRLFKPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGAIWLDST 2101

Query: 798  PAKGTLIEIIF 808
            P  GT +    
Sbjct: 2102 PGVGTTVTFHL 2112


>gi|296272696|ref|YP_003655327.1| multi-sensor hybrid histidine kinase [Arcobacter nitrofigilis DSM
           7299]
 gi|296096870|gb|ADG92820.1| multi-sensor hybrid histidine kinase [Arcobacter nitrofigilis DSM
           7299]
          Length = 1183

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 81/245 (33%), Positives = 124/245 (50%), Gaps = 6/245 (2%)

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
            +L  AK  AE+ +  KS+FLA +SHEIRTP+  IIG S +    R     N +   Y  
Sbjct: 471 KELEIAKIKAEESTKAKSEFLANMSHEIRTPMNGIIGMSHLALQTRL----NDKQKNYIE 526

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            ID     +L+I+ND+LD SKIE+GK+NL     +L E +   ++++     EK + +  
Sbjct: 527 KIDICAKNLLNILNDILDFSKIEAGKLNLEKVEFNLFETIENIVNIIDFSVYEKNLELVV 586

Query: 689 SFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747
           S+  ++      D   + QI  N+LSNAI FT  G QI +  T          ++DTG+G
Sbjct: 587 SYGTDVGKNFYGDNLRLAQILTNLLSNAIKFTNDG-QIGVYITKIDINRYQFEIKDTGIG 645

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           +T  +  K  + F Q       +  GTGLGL ++K +++   GK ++ S    G+     
Sbjct: 646 LTEEQQTKLFQSFSQADGGTTRKYGGTGLGLTISKQLIELMNGKIWVESQINVGSRFIFQ 705

Query: 808 FPLYD 812
             L D
Sbjct: 706 IDLED 710


>gi|270263529|ref|ZP_06191798.1| PAS/PAC sensor signal transduction histidine kinase [Serratia
           odorifera 4Rx13]
 gi|270042413|gb|EFA15508.1| PAS/PAC sensor signal transduction histidine kinase [Serratia
           odorifera 4Rx13]
          Length = 438

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 68/416 (16%), Positives = 146/416 (35%), Gaps = 36/416 (8%)

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
            + L +         ++       G+       R  +R++ + + +  S  E+  D + +
Sbjct: 54  SHWLWVDRSMTPPPGRWSWEPLFYGLYQMQQRNRRRRRELALLIKRFRSGAESLPDAVVM 113

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
              EG I   N     L G+   +   +     L     S              +Q   +
Sbjct: 114 TTVEGNIFWCNGLAQHLLGFRWPEDNGQHILNLLRYPEFSHYL----------QQQEFTR 163

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
                   E  +  R++           +   D+++ +Q +                + +
Sbjct: 164 PLTLQLNNEHYVEFRVMPY---SEGQLLMVARDVTQMRQLEG--------------ARRN 206

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           F A VSHE+RTPLT + G+ E++ ++        +       +      +  +V  LL +
Sbjct: 207 FFANVSHELRTPLTVLQGYLEMMSDEELDGSLRGKA---LGTMQEQTRRMDGLVKQLLTL 263

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707
           S+IE+       E V +   +   +       +     I       + ++  +   ++  
Sbjct: 264 SRIEAAPNVDMNERVDI-PLMLRVLQREAQSLSGDNHEITFRVNEQL-KVFGNDDQLRSA 321

Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
             N++ NA++ TP G  I +S   T N     +V D G G+    + +  + F ++  ++
Sbjct: 322 VSNLVYNAVNHTPKGTHIEVSWQQTPNG-AQFQVSDNGPGIAAEHIPRLTERFYRVDKAR 380

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP---LYDTSHPHDCI 820
             +  G+GLGL + K  +  +  +  I S    GT      P   +   +   + +
Sbjct: 381 SRQTGGSGLGLAIVKHALSHHDARLEILSEQGIGTRFIFTLPNRLIVPAALSENAV 436


>gi|261410070|ref|YP_003246311.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus sp. Y412MC10]
 gi|261286533|gb|ACX68504.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus sp. Y412MC10]
          Length = 459

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 58/254 (22%), Positives = 115/254 (45%), Gaps = 8/254 (3%)

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
           +T  D  E  Q  +  S   K   +    + +F++ VSHEI++PL +I GFS+ ++ +R 
Sbjct: 212 VTRRD--ELGQLADHFSQMAKGLAQLEQMRQEFVSNVSHEIQSPLASIQGFSQTLQTKR- 268

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
             L   +   Y + I+     +  +   LL ++ ++  +  L      + E + + +   
Sbjct: 269 --LSEEQQQHYLSIIEAESRRMSQLSKQLLMLASLDKEENILDKSTFDVAEQIKQVLFHT 326

Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
           +     K + I  S       +  D + + Q+  N+++N+I FT   G I +      N 
Sbjct: 327 EWNWRSKDLTIDMSLPPT--YVYGDQQLLHQVWTNLITNSIKFTAPEGAISLRV-IEHNT 383

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
           +  + + DTG+G+    L      F ++  ++      +GLGL + + +V+ + G+  + 
Sbjct: 384 QCRIEISDTGIGIPQEHLPHIFNRFYRVDEARDRSEGSSGLGLSITQKIVELHGGRIEVT 443

Query: 796 STPAKGTLIEIIFP 809
           S P KGT   +I P
Sbjct: 444 SQPGKGTTFTVILP 457


>gi|157148322|ref|YP_001455641.1| hybrid sensory histidine kinase BarA [Citrobacter koseri ATCC
           BAA-895]
 gi|157085527|gb|ABV15205.1| hypothetical protein CKO_04139 [Citrobacter koseri ATCC BAA-895]
          Length = 918

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 83/334 (24%), Positives = 152/334 (45%), Gaps = 19/334 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +FG+ +   +  P    +               L   +   +             +++ +
Sbjct: 193 IFGWRLMRDVTGPIRNMVNTVDR-----IRRGQLDSRVEGFMLGELDMLKNGINSMAMSL 247

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 248 AAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTP 307

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+ +          N    ++ N I+RS N +L I+ND+LD SK+E+GK+ L  
Sbjct: 308 LNGVIGFTRLTLKTEL----NTTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILES 363

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P  L   + E ++L+   +++K + +  +  N++P  ++ D   ++Q+  N++ NAI F
Sbjct: 364 IPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKF 423

Query: 719 TPSGGQIIISTTHTS----NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           T SG  I I     +      ++ +++RDTG+G+   +  +  + F Q   S   R  GT
Sbjct: 424 TESG-NIDILVEKRALSNTKVQIEIQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGT 482

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           GLGL + + +V+   G     S P +G+      
Sbjct: 483 GLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHI 516


>gi|121705970|ref|XP_001271248.1| sensor histidine kinase/response regulator, putative [Aspergillus
            clavatus NRRL 1]
 gi|119399394|gb|EAW09822.1| sensor histidine kinase/response regulator, putative [Aspergillus
            clavatus NRRL 1]
          Length = 2333

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 77/290 (26%), Positives = 133/290 (45%), Gaps = 14/290 (4%)

Query: 536  EKLLSLRII-IKKLPFSSCYSLTMHDISEW-KQEKNKLSHAKKIAEKESSHKSDFLARVS 593
             ++  +       +           +  +  K  + +  H  K+ E  +  KS FLA +S
Sbjct: 1837 REVRRVSATNAAMIEAQKRALAQAREAEQKAKVAEAEAKHNVKLKEDAAKAKSIFLANIS 1896

Query: 594  HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
            H++RTP+  +IG SE++K        N    EY   I    + +L ++ND+LD SK+E+G
Sbjct: 1897 HDLRTPMNGVIGLSELLKGTNL----NKEQDEYVESIRVCADTLLTLINDILDFSKLEAG 1952

Query: 654  KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR--ILADLRSVKQIALNI 711
            KM +   P+++ E +SE +  ++    ++ +          P   +L D   + QI +N+
Sbjct: 1953 KMKISTVPLNIRETISEVVRALRYTHRDRGLETIEDLDKVPPDLVVLGDPVRLHQIFMNL 2012

Query: 712  LSNAIHFTPSGGQIIIS--TTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQ 767
            LSN+  FTP G  I +    +      + L   V DTG+G+   +  +  KPF Q  +S 
Sbjct: 2013 LSNSYKFTPKGS-ITVRAKVSREGKGRLRLECAVSDTGIGIPEEQKSRLFKPFSQADSST 2071

Query: 768  QIRGEGTGLGLPLAKAMVDA-NMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
                 G+GLGL + KA+++    G  ++ STP  GT +           P
Sbjct: 2072 ARSYGGSGLGLSICKAIIEDVLGGAIWLDSTPGVGTTVTFRLSFSKAKDP 2121


>gi|239904902|ref|YP_002951640.1| two-component sensor histidine kinase [Desulfovibrio magneticus
           RS-1]
 gi|239794765|dbj|BAH73754.1| two-component sensor histidine kinase [Desulfovibrio magneticus
           RS-1]
          Length = 488

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 77/452 (17%), Positives = 170/452 (37%), Gaps = 28/452 (6%)

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
            L     +            R     +A    +     + +    +  +P  + +     
Sbjct: 38  RLAANAGILALAGAVFWFFTRRLSRSLAEVVDVARAIGDGDYRRRLHLLPGGEFSVLAGA 97

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
           + Q     E          +  +  QL +IL+   + + +++  G +   N A+++L   
Sbjct: 98  VNQMARGIEANI-----ATIVAQKTQLQAILDGMREAVMVLDAAGRVRVANPALARLAPI 152

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG--STKEEKLLSLRII- 544
               + R+P  V          +  L    +    ++  +           ++  + ++ 
Sbjct: 153 AANPLGRRPIEVIPSPELQLACDRLLAADPAGPEAESAAEAVTLEARFGPGRVYEVSLVR 212

Query: 545 -IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
              +    +   L  HD+SE ++               S  + DF A V+HE+RTPLT+I
Sbjct: 213 LPGRDGAEAGAVLVFHDVSETRKL--------------SRVRRDFAANVTHELRTPLTSI 258

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
            G++E +      P        +   I ++ N +  +V+D+L+++++E G+         
Sbjct: 259 KGYAETLLG--AAPELAAEKRRFLEVILKNANHMSKMVDDILNLARLEDGQGPAPDARAE 316

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
              A+++A+   +  A  + + +  +       +  D   + Q+  N+L NAI F+P  G
Sbjct: 317 AGAALADAVRECEPLAQARALELVRALPEAGLAVACDQGQLAQVWRNLLENAIRFSPESG 376

Query: 724 QIIISTTHT-SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
           +I ++         V   V D G G+   E E+  + F ++   +      TGLGL + +
Sbjct: 377 RIELAAAPDPDRGLVRCSVLDQGPGIPPEERERVFERFYRVERHRSKTPGSTGLGLAIVR 436

Query: 783 AMVDANMGKFYIFSTPAK--GTLIEIIFPLYD 812
            +V+ + G+ ++     +  G       P+  
Sbjct: 437 HIVERHGGRVWVERGRGEMAGAAFHFTLPMAQ 468



 Score = 40.4 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 29/348 (8%), Positives = 69/348 (19%), Gaps = 31/348 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG--- 145
           +DA G ++  +  L +     A   +G R  +V     +                     
Sbjct: 133 LDAAGRVRVANPALARLA-PIAANPLGRRPIEVIPSPELQLACDRLLAADPAGPEAESAA 191

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +            V  +++ + +  R+   +G     + H          + +      +
Sbjct: 192 EAVTLEARFGPGRVY-EVSLVRLPGRDGAEAGA--VLVFHDVSETRKLSRVRRDFAANVT 248

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
           H             E     + +      R    +     + +   D +           
Sbjct: 249 HELRTPLTSIKGYAETLLGAAPELAAEKRRFLEVILKNANHMSKMVDDILNLARLEDGQG 308

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
            +     E    +       +            +                    NL    
Sbjct: 309 PAPDARAEAGAALADAVRECEPLAQARALELVRALPEAGLAVACDQGQLAQVWRNLLENA 368

Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
           +   P        G +  A           + D        S L   P +      +   
Sbjct: 369 IRFSP------ESGRIELA----------AAPDPDRGLVRCSVLDQGPGIPPEERERVFE 412

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
            +             H  +      L +  +             + G 
Sbjct: 413 RF--------YRVERHRSKTPGSTGLGLAIVRHIVERHGGRVWVERGR 452



 Score = 37.7 bits (86), Expect = 8.5,   Method: Composition-based stats.
 Identities = 24/257 (9%), Positives = 55/257 (21%), Gaps = 13/257 (5%)

Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270
            +  +             S  P      +  +           +       L+   S   
Sbjct: 9   LRAAAVCVGVAALALGLSSLVPTTATPGQRLAANAGILALAGAVFWFFTRRLS--RSLAE 66

Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN-LTPETVDKC 329
             +    I    Y ++ +       S  +            +      +       +D  
Sbjct: 67  VVDVARAIGDGDYRRRLHLLPGGEFSVLAGAVNQMARGIEANIATIVAQKTQLQAILDGM 126

Query: 330 PIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388
                V    G +  ANP+   L    +        G   +   P      A   ++   
Sbjct: 127 REAVMVLDAAGRVRVANPALARLAPIAA-----NPLGRRPIEVIPSPELQLACDRLLAAD 181

Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
                  ++A   T++                  +         +  +  +TR   R   
Sbjct: 182 PAGPEAESAAEAVTLEARFGPGRVYEVSLVRLPGRDGAEAGAVLVFHDVSETRKLSRVRR 241

Query: 449 IEVM----QLCSILEAT 461
                   +L + L + 
Sbjct: 242 DFAANVTHELRTPLTSI 258


>gi|119486633|ref|ZP_01620683.1| Periplasmic Sensor Signal Transduction Histidine Kinase [Lyngbya
           sp. PCC 8106]
 gi|119456250|gb|EAW37382.1| Periplasmic Sensor Signal Transduction Histidine Kinase [Lyngbya
           sp. PCC 8106]
          Length = 536

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 89/306 (29%), Positives = 151/306 (49%), Gaps = 25/306 (8%)

Query: 529 TLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK-NKLSHAKKIAEKESSHKSD 587
                 EE   +++I +         +  ++ + +   E   +L  AK +AE  +  KS 
Sbjct: 230 VANQVGEESDFAIQIPVTTDDEIGELTYALNHLIQRVAEYTEELEKAKVLAESANRSKSV 289

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           FLA +SHE+RTPL AIIG+SE++ ++    LG   ++     I  +G  + D+++D+LDI
Sbjct: 290 FLANMSHELRTPLNAIIGYSEMLHDEADD-LGCHDFLPDLEKIQTAGRHLRDMISDILDI 348

Query: 648 SKIESGKMNLHFEPVSLD-EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706
           SKIE+G + L+ E  S++ + + + I+  +  A + R  ++    N I ++ ADL  V+Q
Sbjct: 349 SKIEAGHVTLYLEDFSVEKQLLKDVITTTKPLAEKNRNTVKIEIKNEIGQMYADLPKVRQ 408

Query: 707 IALNILSNAIHFTPSGGQIIISTTH---------------------TSNEEVILRVRDTG 745
           I LN+LSNA  FT  G  I I                            + +I +V DTG
Sbjct: 409 ILLNLLSNACKFTQDG-VITIVVKRVKSKPSSTRRTLSSGSRFGGNQMQQYLIFKVIDTG 467

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +GM++ + +   K F Q   S   R  GTGLGL +++ + +   G   + S   KG+   
Sbjct: 468 IGMSDEQQKLIFKAFTQADASTTKRFGGTGLGLAISQRLCEILGGGITVESQEGKGSTFI 527

Query: 806 IIFPLY 811
           +  P++
Sbjct: 528 VWLPVH 533


>gi|308125838|ref|ZP_07663534.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030]
 gi|308111657|gb|EFO49197.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030]
          Length = 778

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 80/256 (31%), Positives = 130/256 (50%), Gaps = 12/256 (4%)

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + K     AK  A + S  KS FLA +SHEIRTPL  +IG SEV+ +            +
Sbjct: 376 KAKEDAERAKDDAIEASKAKSSFLANMSHEIRTPLNGVIGISEVLADTPLTAT----QRD 431

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           Y + I+ S  L+L ++ND+LD SKIESG + +      + E++ +  S+V   A EK I 
Sbjct: 432 YVDTIETSSQLLLSLINDVLDFSKIESGMLLISPHSTCVRESIYDIASIVSPKAKEKGIE 491

Query: 686 IRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILR 740
           +  S + N P  I+ D   ++Q+ +N +SNA+ FT  G  + +S T   + E    +   
Sbjct: 492 LTVSISPNTPYHIVIDDHRLRQVIMNFMSNAVKFTERGS-VELSITTLESNESEAIIEFS 550

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V+D+G+G+   + ++   PF Q  +S   +  GTGLGL ++  +V+   G   + S   +
Sbjct: 551 VQDSGIGIDEQQQKRIFAPFAQEDDSTTRQFGGTGLGLAISTQLVELMGGSIQLESEKGR 610

Query: 801 GTLIEIIF--PLYDTS 814
           G+        P+    
Sbjct: 611 GSRFYFQLTAPISQAH 626


>gi|197334573|ref|YP_002156818.1| phosphate regulon sensor kinase PhoR [Vibrio fischeri MJ11]
 gi|197316063|gb|ACH65510.1| phosphate regulon sensor kinase PhoR [Vibrio fischeri MJ11]
          Length = 431

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 73/369 (19%), Positives = 146/369 (39%), Gaps = 29/369 (7%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +  ++++   + +     EA  D + +   EG I+  N     L G+   D   +P T  
Sbjct: 87  KKRRKELSGLIRRFRQGAEALPDAVVVFRHEGNIVWCNTLAQSLLGFRWPDDSGQPITNL 146

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
           +                   + Q  +      +      +L I I        Y + + D
Sbjct: 147 IRTPDFVQYL----------MDQHFDFPLDMKSPINNNKTLEIRIAPYSDGE-YLMVVRD 195

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           +S+ KQ +                + +F A VSHE+RTP+T + G+ E+  ++    L  
Sbjct: 196 VSQIKQLEG--------------MRRNFFANVSHELRTPMTVLRGYLEM--SEDPDMLVG 239

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
           P +      +    + +  +V  LL +SKIE+   ++  + V +   +          + 
Sbjct: 240 PMWNRAHGVMTEQLSRMEGLVEQLLTLSKIEAAATSMLEDRVDVPSMLDILEKEAVALSG 299

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
           E+   I  +  +N+ ++  D   ++    N++ NA+  T  G +II+    T +    LR
Sbjct: 300 ERNHKITFNVDHNL-KVKGDEDQLRSAISNLVYNAVKHTTDGAEIIVDWQSTFSG-AELR 357

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V D+G G+    + +  + F ++  ++     G+GLGL + K  +  +  +  I S   K
Sbjct: 358 VTDSGQGIEPQHIPRLTERFYRVDKARSRETGGSGLGLAIVKHALSHHDSQLEIKSKLGK 417

Query: 801 GTLIEIIFP 809
           G+      P
Sbjct: 418 GSTFSFTLP 426


>gi|172062273|ref|YP_001809924.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ambifaria
           MC40-6]
 gi|171994790|gb|ACB65708.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ambifaria
           MC40-6]
          Length = 530

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 70/371 (18%), Positives = 154/371 (41%), Gaps = 23/371 (6%)

Query: 453 QLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
           +  +++ + +D  + +++  G + + N    ++ G+  ++I+   F+ F   +  +    
Sbjct: 30  RFQTVVASITDYAVFMLDPHGNVATWNAGAERIKGFRTDEIIGSHFSRFYPADAIAAGRP 89

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQE 567
                 +       +  +    K+       + I  +         +     D++E K+ 
Sbjct: 90  AHALEAAAAYGH-FQDESWRVRKDGSRFWASVTITAVRDESHQLRGFIKITRDMTERKRV 148

Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRT---PLTAIIGFSEVIKNQRFGPLGNPRYI 624
           +          E  +     F+A ++HE+R    PL   IG  + +     GP       
Sbjct: 149 EE--------LEAATRRLDVFIATLAHELRNQLAPLRHTIGILQGLPASELGPA----LT 196

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           +  +  DR    ++ +V+DLLDI +I+S K++L   PV++ + V  ++  ++   + +  
Sbjct: 197 QCKDIADRQIEQLVRLVDDLLDIGRIKSDKVDLKKAPVNVRDIVYRSVQGIEPKVDARGQ 256

Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744
            I          +  D   + Q+  N+L NA  ++P+G +I +      N  V +++ D 
Sbjct: 257 RIIVRLPPAPVIVHGDDVRLVQVLYNLLDNASKYSPNGERIELHVRTEQN-VVAIQIVDY 315

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTL 803
           G+G+     E    PF Q   +++    G GLGL ++K  VD + G     S     G+ 
Sbjct: 316 GIGIVPGAQESIFDPFEQENAAERHAPGGLGLGLAISKKFVDLHGGSITADSAGIGAGST 375

Query: 804 IEIIFPLYDTS 814
             +  P+ +++
Sbjct: 376 FTVRLPIAESN 386



 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/285 (8%), Positives = 70/285 (24%), Gaps = 17/285 (5%)

Query: 58  NQESVSNTNYLDSENTFVFDPIPRTVRF-----------TWNIDAHGYLKEISEELPKTI 106
           +Q   + ++   +++           RF            + +D HG +   +    +  
Sbjct: 4   DQPQPNPSDQPPAQHEQPLLDRYAEFRFQTVVASITDYAVFMLDPHGNVATWNAGAERIK 63

Query: 107 GNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ--NTWYGKTTLWPIEGTNLYVPIDLA 164
           G    ++IG           I        L        +  ++     +G+  +  + + 
Sbjct: 64  GFRTDEIIGSHFSRFYPADAIAAGRPAHALEAAAAYGHFQDESWRVRKDGSRFWASVTIT 123

Query: 165 ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDI 224
           A  +   + +  GF    I            L     +    +  +     +        
Sbjct: 124 A--VRDESHQLRGF--IKITRDMTERKRVEELEAATRRLDVFIATLAHELRNQLAPLRHT 179

Query: 225 FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYT 284
                  P   +   ++   +    + + L      LL        + +        +  
Sbjct: 180 IGILQGLPASELGPALTQCKDIADRQIEQLVRLVDDLLDIGRIKSDKVDLKKAPVNVRDI 239

Query: 285 KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
             +    ++       + +  R  P+      +   L     +  
Sbjct: 240 VYRSVQGIEPKVDARGQRIIVRLPPAPVIVHGDDVRLVQVLYNLL 284



 Score = 40.4 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/130 (9%), Positives = 39/130 (30%), Gaps = 7/130 (5%)

Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
           F +  HGN+   N     +  +++ + I      S    A  ++       +    +   
Sbjct: 44  FMLDPHGNVATWNAGAERIKGFRTDEIIG--SHFSRFYPADAIAAGRPAHALEAAAAYG- 100

Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
                     ++ +     A +       ++  +      I  +  + +  + ++E    
Sbjct: 101 --HFQDESWRVRKDGSRFWA-SVTITAVRDESHQLRGFIKITRDMTERKRVE-ELEAATR 156

Query: 453 QLCSILEATS 462
           +L   +   +
Sbjct: 157 RLDVFIATLA 166


>gi|309792039|ref|ZP_07686515.1| ATPase domain-containing protein [Oscillochloris trichoides DG6]
 gi|308225932|gb|EFO79684.1| ATPase domain-containing protein [Oscillochloris trichoides DG6]
          Length = 801

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 80/365 (21%), Positives = 152/365 (41%), Gaps = 30/365 (8%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           +++ +  +  +IL + SDG+ + ++ G+I+  N A   +         R  F        
Sbjct: 445 QVQQDAKERQAILTSISDGVLVCDQHGMIVLLNHAAETILELQDWQERRIHFDEL----- 499

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISE 563
                  L  +                  E + ++L                + +HDI+E
Sbjct: 500 ------PLEAVPQQREMFGTRHDDQFRLGE-RYITLSRAAVVAEDGQSLGTVIVLHDITE 552

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
                         A      K+DF+A +SHE+RTPLT I G+++++   R         
Sbjct: 553 --------------AVLMDQAKTDFIATISHELRTPLTVIRGYTDLLLRGRGEEAPTTDQ 598

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            E    +      + +IVN+ + I+ +ESG++    +P  ++  +S A+S ++     K 
Sbjct: 599 AELLEQVRLRAVDMTNIVNNAIMIADLESGQLETDLQPQDVELVLSMALSPLRQGFESKN 658

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
           + I    A ++P +LAD   +++    IL NA+ +T  GG + I  T  +  E+ +   D
Sbjct: 659 LSINLELAPDLPPVLADREQLRRAFGQILDNALRYTHQGG-VTIQATVRNAHEIEVHFSD 717

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TG G+    L +    F ++         G+GLGL + + +++   G   + STP +G+ 
Sbjct: 718 TGTGIPAEMLPRLFMRFQRVEG-NNSAQRGSGLGLAITRQLIERQGGHVTVISTPGEGST 776

Query: 804 IEIIF 808
             I  
Sbjct: 777 FTITL 781


>gi|320352270|ref|YP_004193609.1| multi-sensor signal transduction histidine kinase [Desulfobulbus
           propionicus DSM 2032]
 gi|320120772|gb|ADW16318.1| multi-sensor signal transduction histidine kinase [Desulfobulbus
           propionicus DSM 2032]
          Length = 955

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 106/780 (13%), Positives = 224/780 (28%), Gaps = 103/780 (13%)

Query: 95  LKEISEELPKTIGNYAFKM----IGMRLCDVSDILHIDPNNHIGDLLKR----QNTWYGK 146
             EI++     +G    ++          D++    +     +   L      +  ++  
Sbjct: 179 YMEINDHCFLVLGYQPGELPSLQYIETWWDLAHPDDL---PSVQAALDAHLVGETPFFDC 235

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                 +  +     + A +            R FG                R  ++   
Sbjct: 236 QYRLRHKEGHWIWIHETAQVLQRDAAGSP--LRVFGAFTEISGHKQAEVELARARREADT 293

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
           + +              +             R ++ +         + +    E + L  
Sbjct: 294 IIQQFLDSLIAVDTDLRLTRVNQATCSLLGYRQEDLLGQPVFVLFQEPEAKVRETFSLFQ 353

Query: 264 SEE--SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL-----SHRNHPSLSAYFD 316
           +E        +  +   +            L+N        +                  
Sbjct: 354 TEGDNERRNVELRYRAKDGASLPMSFNLSLLRNEEDGQPLGVVAGAKDISRLRFALEEVS 413

Query: 317 EGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
                  +  +  P+    V+    +   NP+F  +    S          S LL    L
Sbjct: 414 RQNAYIEKLFEILPVGLVAVWPSHEIATTNPAFQEILNQWSARLQVSQKECSQLLIQSAL 473

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
           ++  + +   + R +        R+   +                     +         
Sbjct: 474 AEWTSNRQCFMVRIEEQGQIGFFRIACARITGS-----------------DANGFFLTFV 516

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
           +  + ++     E + + L   +E   DG+ I +    I   N AV    GY  E+ L K
Sbjct: 517 DVTEEKLA----EEQRLLLSKAVEQGKDGVVITDSSYRIRYVNPAVLAASGYEAEEYLGK 572

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-- 553
                 E        + + ++L      +         K+  +    I    +       
Sbjct: 573 TPWDLREDLVEPASMNEIRQVLDRGETWSGTLEMW--KKDGSIAEEEITTSAMRNEQGEI 630

Query: 554 --YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS---- 607
             +     D++E ++ + +L        ++        A V+HEI TP+  I        
Sbjct: 631 SHFVTVKRDVTELRRLQQQL-----ALAQKLESIGQLAAGVAHEINTPMQYIQNNLAFFE 685

Query: 608 ------EVIKNQRFGPLGNP-------------------RYIEYANYIDRSGNLVLDIVN 642
                 E +  +      N                       E    +      V+ I++
Sbjct: 686 QSFADIERLLKEITKSADNTPSAKLTTLMQEVNLDFLLTEIPESLQEVKEGIRRVVRIIS 745

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702
            L + S       +     + ++ A+  AI + +       + + T FA ++P +     
Sbjct: 746 ALREFSHPG----DSVRVNIDINHALENAIIVSRNEWKYVAV-LDTEFAEDLPLVFCYPD 800

Query: 703 SVKQIALNILSNAIHFT--------PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELE 754
            + Q+ LN+L NA H             G+I++ST   ++  V +R+ D G G+      
Sbjct: 801 QLNQMFLNLLINAAHAIGRAREAEPERPGRILVSTRREAD-WVAVRIGDNGCGIPKKIRH 859

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           +   PF          G+GTG GL +A ++V  + G+    S P +GT   I+ PL   +
Sbjct: 860 RIFDPFFTTK----EVGKGTGQGLAIAHSIVGNHNGQIDCTSIPGQGTEFTILLPLGPQT 915



 Score = 78.5 bits (192), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 35/376 (9%), Positives = 108/376 (28%), Gaps = 28/376 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL-----KRQNTW 143
           +D    L  +++     +G     ++G        +L  +P   + +       +  N  
Sbjct: 305 VDTDLRLTRVNQATCSLLGYRQEDLLGQP----VFVLFQEPEAKVRETFSLFQTEGDNER 360

Query: 144 YGKTTLWP-IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
                 +   +G +L +  +L+ L     + +  G                     R + 
Sbjct: 361 RNVELRYRAKDGASLPMSFNLSLL-RNEEDGQPLGV--VAGAKDISRLRFALEEVSRQNA 417

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
               L EI           ++I +       +  +               ++++      
Sbjct: 418 YIEKLFEILPVGLVAVWPSHEIATTNPAFQEILNQWSARLQVSQKECSQLLIQSALAEWT 477

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
           ++ +  +   E+   I   +    +  G+      ++  +       +     +E   L 
Sbjct: 478 SNRQCFMVRIEEQGQIGFFRIACARITGS------DANGFFLTFVDVTEEKLAEEQRLLL 531

Query: 323 PETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
            + V++      +      + Y NP+ L  + Y++ + +              L +  ++
Sbjct: 532 SKAVEQGKDGVVITDSSYRIRYVNPAVLAASGYEAEEYLGKTPWD----LREDLVEPASM 587

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
             +          + +  +        +            N+  E      ++ +  + R
Sbjct: 588 NEIRQVLDRGETWSGTLEMW---KKDGSIAEEEITTSAMRNEQGEISHFVTVKRDVTELR 644

Query: 442 INKRKMEIEVMQLCSI 457
             ++++ +   +L SI
Sbjct: 645 RLQQQLAL-AQKLESI 659



 Score = 70.4 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 47/151 (31%), Gaps = 6/151 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL-HIDPNNHIGDLLKRQNTWYGKT 147
            D+   ++ ++  +    G  A + +G    D+ + L      N I  +L R  TW G  
Sbjct: 545 TDSSYRIRYVNPAVLAASGYEAEEYLGKTPWDLREDLVEPASMNEIRQVLDRGETWSGTL 604

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
            +W  +G+     I  +A  + +   E S F    +                L +K   +
Sbjct: 605 EMWKKDGSIAEEEITTSA--MRNEQGEISHF--VTVKRDVTEL-RRLQQQLALAQKLESI 659

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKN 238
            ++  G +                      +
Sbjct: 660 GQLAAGVAHEINTPMQYIQNNLAFFEQSFAD 690


>gi|189467629|ref|ZP_03016414.1| hypothetical protein BACINT_04019 [Bacteroides intestinalis DSM
           17393]
 gi|189435893|gb|EDV04878.1| hypothetical protein BACINT_04019 [Bacteroides intestinalis DSM
           17393]
          Length = 534

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 82/386 (21%), Positives = 165/386 (42%), Gaps = 21/386 (5%)

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAI--INREGIILSTNRAVSKLFGYPVEDIL 493
           E       +R++      L SI+      I +   +    +L  N +++  +G       
Sbjct: 163 EIAVREYKEREVRAS-NTLGSIMNNMGVDIYVNSFDSHD-MLYANASMAAPYGGIRHFEG 220

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK-EEKLLSLRIIIKKLPFSS 552
           +K +       T          ++  + + T           ++    +           
Sbjct: 221 KKCWQALYTDKTGECEFCPKRHLIDENGQPTRVYSWDYQRPFDKCWFRVFSAAFPWIDGQ 280

Query: 553 -CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
             + +T  DI   K+ + +L  AK+ AE     KS FLA +SHEIRTPL AI+GF+ ++ 
Sbjct: 281 MAHVITSVDIDHQKKIEEELRIAKEKAENLDRLKSAFLANMSHEIRTPLNAIVGFASMLV 340

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
            +            Y   +  +  L+L +++D+LD+SKIE+G ++ +   +++ +   + 
Sbjct: 341 EED----DKKERQGYIEIMQENTELLLQLISDILDLSKIEAGTLDFNMGYLNIKDFCEDI 396

Query: 672 ISLVQLYANEKRILIRTSFANNIP--RILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
           +   ++   +K + +    A+N+P  RI  D + + Q+  N ++NA+ FT  G QI +  
Sbjct: 397 LRGYEIK-EDKPVPVL--LASNLPDYRIYTDKKRLMQVVTNFINNALKFTSEG-QITLEY 452

Query: 730 T-HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                  E+   V DTG+G+    + +    F ++        +GTGLGL + +++++  
Sbjct: 453 HFKEDTNEIEFSVTDTGIGIAPDAVGQVFDRFVKLNTF----SKGTGLGLSICRSIIEHL 508

Query: 789 MGKFYIFSTPAKGTLIEIIFPLYDTS 814
            G   + S    G+      P  +++
Sbjct: 509 GGTIGLESEVGVGSRFWFTHPCAESA 534


>gi|306842152|ref|ZP_07474821.1| integral membrane sensor signal transduction histidine kinase
           [Brucella sp. BO2]
 gi|306287739|gb|EFM59170.1| integral membrane sensor signal transduction histidine kinase
           [Brucella sp. BO2]
          Length = 522

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 94/355 (26%), Positives = 169/355 (47%), Gaps = 4/355 (1%)

Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL 519
           A  D    ++ EGI+ S +   +KL G   + +        +           L ++ + 
Sbjct: 118 AAGDMQFGLDIEGIVSSVDGETAKLLGVQPKMLEGTALIDRVHVADRVQYLSLLADLRAG 177

Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579
              + ++            +      +        +L    +   ++  ++++  K   E
Sbjct: 178 MATRKVDVRLRSIE-NGNPVFRAYRFEGAGSDRAITLIGRSLEGEQKLLDEIAMLKAELE 236

Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639
            E   K   LA VSHE+RTPL +IIGFS+++ ++  G L + R  EYA  I +SG+ +L+
Sbjct: 237 SERIGKGRLLATVSHELRTPLNSIIGFSDMLTHEIGGKLASDRQREYAGLIHQSGHYLLE 296

Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA 699
           +VN +LD S++E+G  ++  +     +AV    +++   A +K +       N +  ++A
Sbjct: 297 LVNAVLDNSRLETGTYSIAPQSFVFRDAVEMCTAVMLPQAEKKGVAFCHRVGNGVGELVA 356

Query: 700 DLRSVKQIALNILSNAIHFTPSGGQIIISTTH---TSNEEVILRVRDTGVGMTNYELEKA 756
           D R+V+QI LN+ +NA+ FT SGG + I            +   V DTG+G+   +L++ 
Sbjct: 357 DRRAVQQILLNLATNAVKFTQSGGCVTIDAARVMADGGPMLEFSVSDTGIGIDLEDLQRI 416

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
             PF +  NS     EG+GLGL + K +V+ + G   + S P +GT++ I  PL 
Sbjct: 417 GTPFVRAGNSYTQAQEGSGLGLSVVKGLVELHQGSMQLKSRPGEGTVVMIRLPLA 471


>gi|126173617|ref|YP_001049766.1| PAS/PAC sensor signal transduction histidine kinase [Shewanella
           baltica OS155]
 gi|152999897|ref|YP_001365578.1| PAS/PAC sensor signal transduction histidine kinase [Shewanella
           baltica OS185]
 gi|160874522|ref|YP_001553838.1| PAS/PAC sensor signal transduction histidine kinase [Shewanella
           baltica OS195]
 gi|217974138|ref|YP_002358889.1| PAS/PAC sensor-containing signal transduction histidine kinase
           [Shewanella baltica OS223]
 gi|125996822|gb|ABN60897.1| PAS/PAC sensor signal transduction histidine kinase [Shewanella
           baltica OS155]
 gi|151364515|gb|ABS07515.1| PAS/PAC sensor signal transduction histidine kinase [Shewanella
           baltica OS185]
 gi|160860044|gb|ABX48578.1| PAS/PAC sensor signal transduction histidine kinase [Shewanella
           baltica OS195]
 gi|217499273|gb|ACK47466.1| PAS/PAC sensor signal transduction histidine kinase [Shewanella
           baltica OS223]
 gi|315266761|gb|ADT93614.1| PAS/PAC sensor signal transduction histidine kinase [Shewanella
           baltica OS678]
          Length = 432

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 70/372 (18%), Positives = 150/372 (40%), Gaps = 33/372 (8%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           R    ++   + +     EA  D   +++ E  IL  N+    + G+       +     
Sbjct: 87  RRRVGQLAALLARFRQGAEALPDAAVVLDSEHNILWCNKLAQLILGFVWPQDNGQRIDNL 146

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
           +     S           L+L   +         + +LL +RI+           L   D
Sbjct: 147 IRHPDFSAYIKSAQYKEPLELPSPV--------SDRRLLEIRIMAY---GDRQLLLIARD 195

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I+  +Q +                + +F+A VSHE++TPLT + G+ E++++       +
Sbjct: 196 ITRIRQLEG--------------MRKEFVANVSHELKTPLTVLQGYLEMMQSM---AEPD 238

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIE-SGKMNLHFEPVSLDEAVSEAISLVQLYA 679
              ++    + +    +  +V  LL +S+IE +  +NL    V++ + +       +  A
Sbjct: 239 SMNVKPLALMQQQTRRMQSMVEQLLMLSRIEDAADINLEHT-VNMTQLMEVLKEEAKALA 297

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
            + R  +       +     +   ++    N++SNAI +T  GG+I +     +   +  
Sbjct: 298 QD-RYELSFYCEPGLDS-HGNELQLRSACSNLISNAIRYTEPGGKITVQWRSMATGAI-F 354

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V DTG G+    + +  + F ++ +++  +  G+GLGL + K  ++ +  +  I S   
Sbjct: 355 SVTDTGEGIAPQHIGRLTERFYRVDSARSRQTGGSGLGLAIVKHALNHHHSELKISSEVG 414

Query: 800 KGTLIEIIFPLY 811
           KG+    + PL+
Sbjct: 415 KGSTFSFVIPLH 426


>gi|94500324|ref|ZP_01306857.1| Signal transduction histidine kinase [Oceanobacter sp. RED65]
 gi|94427623|gb|EAT12600.1| Signal transduction histidine kinase [Oceanobacter sp. RED65]
          Length = 896

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 93/371 (25%), Positives = 159/371 (42%), Gaps = 17/371 (4%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF--GYPVEDILRK-PFTVF 500
           + K +   +QL +  ++   GI         L+ ++ + ++F  G P         F   
Sbjct: 218 QEKQKQHRIQLAA--DSAKLGIWEYQLSNGKLTWDKTMWRIFNAGKPANADEALATFKAR 275

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTM 558
           L     S +     + ++       +        E K +    II+     +      T 
Sbjct: 276 LHPLDKSRVMDLFYQAVNQQTPFHTQFRIQTDDSEIKTIKADAIIEYDVDGNATAIVGTN 335

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            DIS  +Q++  L  A+  AE  +  K DFLA +SHEIRTP+  I+G  E++KN     L
Sbjct: 336 QDISAQQQQEQALIDARMAAEHAARVKGDFLASMSHEIRTPMNGIMGMLELLKNTELTTL 395

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
                 +  N    S   +L ++ND+LD SKIE+ ++ L     +L   + E    +   
Sbjct: 396 ----QAQRVNIALSSSKSLLVLINDILDFSKIEADRLILEEIDFNLRSLLGELTEALSQL 451

Query: 679 ANEKRILIRTS-FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT----S 733
           A  K I +       +   +  D   ++QI  N++SNAI FT  G +++I  +       
Sbjct: 452 AESKNIELVLDTVEVHQDMVKGDPSRIRQIITNLISNAIKFTHQG-EVLIRVSLQEYSLD 510

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
             +V   V+D+G+G+T  + +K    F Q  +S      GTGLGL + K + +A  G+  
Sbjct: 511 QWQVNFSVKDSGIGITQGQQKKLFDAFSQADSSTTREYGGTGLGLAIVKKLCEAMDGQIR 570

Query: 794 IFSTPAKGTLI 804
           + S    G+  
Sbjct: 571 VKSKMNIGSEF 581


>gi|314933668|ref|ZP_07841033.1| sensor protein SrrB [Staphylococcus caprae C87]
 gi|313653818|gb|EFS17575.1| sensor protein SrrB [Staphylococcus caprae C87]
          Length = 588

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 65/354 (18%), Positives = 148/354 (41%), Gaps = 32/354 (9%)

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           S+L +  +G+  IN + +++ +N+                    F++  +   +   + +
Sbjct: 259 SLLNSMVEGVLGINDQRVVIFSNKMA-------------DDIIHFIDDFSKESIEQQIEK 305

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575
                  + LE            ++  I   +    S   + + D++             
Sbjct: 306 TFESKGTEFLEIEISTRYY--VFITSYINRIQPNGRSGIVVIIRDMT------------- 350

Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
                    K DF+A VSHE+RTP++ + G++E I +            +    +     
Sbjct: 351 -NEHNLDQMKKDFIANVSHELRTPISLLQGYTESIVDGIVTE--PDEIRDSLGVVLDESK 407

Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695
            +  +VN+LL+++++++  +++  E   +   + +  +  ++ A++  + +  +  N+  
Sbjct: 408 RLNRLVNELLNVARMDAEGLSVEKEVQPIKNLLDKMKAKYRMQADDLGLTMEFNSGNDHL 467

Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755
               D+  + Q+  N++ NA  +T  G  I + T     +  IL + DTG G+    L++
Sbjct: 468 LWDYDMDRMDQVLTNLIDNASRYTQPGDTIAV-TASKDEQYNILYISDTGTGIAPEHLQQ 526

Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
               F ++  S++   +GTGLGL + K +++ + G+  + S   KGT   I  P
Sbjct: 527 VFDRFYKVDASRKRGKQGTGLGLFICKMIIEEHGGQIDVKSELGKGTTFIIKLP 580


>gi|153832055|ref|ZP_01984722.1| sensor kinase VbsS [Vibrio harveyi HY01]
 gi|148871670|gb|EDL70511.1| sensor kinase VbsS [Vibrio harveyi HY01]
          Length = 1216

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 91/376 (24%), Positives = 165/376 (43%), Gaps = 14/376 (3%)

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
           E E   L  I++  +  + I      I  +N ++ +        I  +     L  N   
Sbjct: 535 EKEKQWLMDIIQEINSIVFIHGEGNQIQMSNCSLYRNKRCKGCTIENRNSAKPLVNNVVE 594

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII-KKLPFSSCYSLTMHDISEWKQ 566
                L ++++                 + +   R  I             + DI+E ++
Sbjct: 595 -----LRQVIAGKRISDTTAAKNCKLGIQHVYRERKSIFSPSSKKQFVLTVLQDITEQQE 649

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
            +  L  A++ A+     + +FLA +SHE+RTPL+A  G  +++  Q      N    E 
Sbjct: 650 RELALIVAQERAQTAVRARENFLATMSHELRTPLSAAHGLLDLLTRQA----DNDSSKEL 705

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
                RS N +  +V+++LD SK+E+G++ +      +   + + +   +  A  K +  
Sbjct: 706 ITQAMRSLNHLNLLVDEVLDYSKLEAGQLKVTPVKTDVVTTLCDVVRSFEPKAVSKGLDY 765

Query: 687 RTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           R +F     P +  D   + QI  N+LSNA+ FT  G +I +S       ++IL++ DTG
Sbjct: 766 RVTFKPFANPWLKVDAVRLVQITTNLLSNAVKFTSDG-EINVSVAMNE-GQLILKIADTG 823

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +GMT+ +LE  ++PF Q  ++   +  GTGLGL +   +V+   G+  I S    GT + 
Sbjct: 824 IGMTDSQLEGILQPFVQADDTITRKYGGTGLGLSIVDRLVECMGGELCIDSQFGLGTTVV 883

Query: 806 IIFPLYD-TSHPHDCI 820
           +  P+    S+P   I
Sbjct: 884 VKLPIILCESNPRPAI 899


>gi|295087894|emb|CBK69417.1| PAS domain S-box [Bacteroides xylanisolvens XB1A]
          Length = 869

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 91/536 (16%), Positives = 183/536 (34%), Gaps = 33/536 (6%)

Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANP 346
               ++ N +ES   +  +    +     E  N               Y    ++ + N 
Sbjct: 349 IVWLMRANRRESKRRIQAQTRLLVQNKLVEQRNEFDNVFHSIRDGVITYDTDLHIHFTNR 408

Query: 347 SFLLLTK--YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
           S L +    Y+S           ++        +     +    +    +         +
Sbjct: 409 SLLQMLHLPYESGGRFYEGMMAGSIFKIYYNGQDILHSMLKQVAAKGESVKIPQGAFMKE 468

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
            + +    ++       ++               +        E++       ++ +S  
Sbjct: 469 VHSDKYFPVSGEIVPIRSKDTITGMALSARNISNE--------EMQKRFFDMAVDESSIY 520

Query: 465 IAIINREGIILSTNRAVSKLFGYPVE--DILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522
               + E       +   K  GY      I R      +  +    ++      L     
Sbjct: 521 PWQFDMETNCFIFPQGFLKRLGYDESVTTISRDEMDRTIHPDDLKEISPLFNRAL-TGED 579

Query: 523 QTLEKITLGSTKEEKLLSLRII---IKKLPFSSCY--SLTMHDISEWKQEKNKLSHAKKI 577
                         +          I  L   S Y        I  +K  + ++  A+  
Sbjct: 580 SNTRLNFRQRNVNGEYEWWEYRSSVITGLTQDSLYNILGVCQSIQRYKTAEQEMREARDK 639

Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
           A +    KS FLA +SHEIRTPL AI+GFS+++ +       +    ++   I+++  L+
Sbjct: 640 ALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDT--SGFTSEEIAQFIGTINKNCGLL 697

Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN-NIPR 696
           L ++ND+LD+S+IESG M   F   +L   +       +L      + +       +   
Sbjct: 698 LALINDILDLSRIESGTMEFMFAEHNLPLLLKTVHDSQRLNMPP-GVELVLRMPESDKKY 756

Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN---EEVILRVRDTGVGMTNYEL 753
           +  D   ++Q+  N+++NA  FT SG    I+  +  +       + V DTGVG++   +
Sbjct: 757 LTTDNVRLQQVVNNLINNAAKFTSSG---FITFGYEDDEVPGYTRIFVEDTGVGISEEGI 813

Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
               + F ++ N      +G GLGL + + +++   G   + S   KGT   +  P
Sbjct: 814 RHIFERFYKVDNFT----QGAGLGLSICQTIIERLNGTISVTSEVGKGTRFTVRLP 865


>gi|237723104|ref|ZP_04553585.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
 gi|229447626|gb|EEO53417.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
          Length = 789

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 91/536 (16%), Positives = 183/536 (34%), Gaps = 33/536 (6%)

Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANP 346
               ++ N +ES   +  +    +     E  N               Y    ++ + N 
Sbjct: 269 IVWLMRANRRESKRRIQAQTRLLVQNKLVEQRNEFDNVFHSIRDGVITYDTDLHIHFTNR 328

Query: 347 SFLLLTK--YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
           S L +    Y+S           ++        +     +    +    +         +
Sbjct: 329 SLLQMLHLPYESGGRFYEGMMAGSIFKIYYNGQDILHSMLKQVAAKGESVKIPQGAFMKE 388

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
            + +    ++       ++               +        E++       ++ +S  
Sbjct: 389 VHSDKYFPVSGEIVPIRSKDTITGMALSARNISNE--------EMQKRFFDMAVDESSIY 440

Query: 465 IAIINREGIILSTNRAVSKLFGYPVE--DILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522
               + E       +   K  GY      I R      +  +    ++      L     
Sbjct: 441 PWQFDMETNCFIFPQGFLKRLGYDESVTTISRDEMDRTIHPDDLKEISPLFNRAL-TGED 499

Query: 523 QTLEKITLGSTKEEKLLSLRII---IKKLPFSSCY--SLTMHDISEWKQEKNKLSHAKKI 577
                         +          I  L   S Y        I  +K  + ++  A+  
Sbjct: 500 SNTRLNFRQRNVNGEYEWWEYRSSVITGLTQDSLYNILGVCQSIQRYKTAEQEMREARDK 559

Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
           A +    KS FLA +SHEIRTPL AI+GFS+++ +       +    ++   I+++  L+
Sbjct: 560 ALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDT--SGFTSEEIAQFIGTINKNCGLL 617

Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN-NIPR 696
           L ++ND+LD+S+IESG M   F   +L   +       +L      + +       +   
Sbjct: 618 LALINDILDLSRIESGTMEFMFAEHNLPLLLKTVHDSQRLNMPP-GVELVLRMPESDKKY 676

Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN---EEVILRVRDTGVGMTNYEL 753
           +  D   ++Q+  N+++NA  FT SG    I+  +  +       + V DTGVG++   +
Sbjct: 677 LTTDNVRLQQVVNNLINNAAKFTSSG---FITFGYEDDEVPGYTRIFVEDTGVGISEEGI 733

Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
               + F ++ N      +G GLGL + + +++   G   + S   KGT   +  P
Sbjct: 734 RHIFERFYKVDNFT----QGAGLGLSICQTIIERLNGTISVTSEVGKGTRFTVRLP 785


>gi|158338239|ref|YP_001519416.1| serine/threonine protein kinase and signal transduction histidine
            kinase (STHK) with GAF and PAS/PAC sensor [Acaryochloris
            marina MBIC11017]
 gi|158308480|gb|ABW30097.1| serine/threonine protein kinase and signal transduction histidine
            kinase (STHK) with GAF and PAS/PAC sensor [Acaryochloris
            marina MBIC11017]
          Length = 2040

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 87/262 (33%), Positives = 138/262 (52%), Gaps = 16/262 (6%)

Query: 566  QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
            Q   +L  A+  AE  +  KSDFLA +SHE+RTPL AI+GFS+++      P       E
Sbjct: 1557 QRTQQLRTAQLEAEHANQAKSDFLASMSHELRTPLNAILGFSQLMAQDARLP---QHLGE 1613

Query: 626  YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
                I+RSG  +LD++ND+L +SKIE+GK  L  +  +  E +     ++QL A  K + 
Sbjct: 1614 SLAIINRSGEHLLDLINDVLALSKIEAGKTTLQLDTFNFYEFLQAIHGMLQLRAKSKNLD 1673

Query: 686  IRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-------- 736
                 + +IP ++ AD R ++QI +N+L NAI FT  G ++ +  T+  ++         
Sbjct: 1674 FHFEQSPDIPEVIQADERKLRQILINLLGNAIKFTEQG-RVTLRVTNAHSQSEGLTPPDI 1732

Query: 737  --VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
              +   V DTG G+   EL+   + F Q  +  + R +GTGLGLP++++ V    G+  +
Sbjct: 1733 SVLQFEVEDTGAGIAKDELDSVFEAFVQTQSGIKSR-QGTGLGLPISQSFVQLMGGQLQV 1791

Query: 795  FSTPAKGTLIEIIFPLYDTSHP 816
             S    GT      P+  T+ P
Sbjct: 1792 RSEEGIGTCFFFNLPVLVTTTP 1813


>gi|138895943|ref|YP_001126396.1| two component system histidine kinase [Geobacillus
           thermodenitrificans NG80-2]
 gi|196248834|ref|ZP_03147534.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. G11MC16]
 gi|134267456|gb|ABO67651.1| Two component system histidine kinase [Geobacillus
           thermodenitrificans NG80-2]
 gi|196211710|gb|EDY06469.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. G11MC16]
          Length = 468

 Score =  282 bits (722), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 67/266 (25%), Positives = 123/266 (46%), Gaps = 3/266 (1%)

Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                ++++    E  +     +       KE   K +FLA VSHE+RTPL+ I G+SE 
Sbjct: 206 GDYGAAISVRTDDEIGRLAQAFNQMADAIAKEDERKREFLANVSHELRTPLSYIKGYSEA 265

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           + +             +   I R    +  +V DLLD++++E   + L   PV+  + + 
Sbjct: 266 LLSGL--ARTKEEEQSHLRLIHRETERMERLVRDLLDLAQLEGQSVPLERAPVAFAQVIE 323

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
           + + + +    +KR+ +       +  +  D   ++Q+  N+L NAI +TP GG + +  
Sbjct: 324 DVMDMYRPIITQKRLTLTCDLDYELI-VDGDADRLEQVVRNLLDNAIRYTPEGGAVTVRL 382

Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
           +  S+ E  L +RDTG G+   +L    + F ++  ++  +  GTGLGL + K +V  + 
Sbjct: 383 SRFSDTEGELVIRDTGKGIPKDQLPLLGQRFFRVDRARTRKEGGTGLGLAIVKQIVALHG 442

Query: 790 GKFYIFSTPAKGTLIEIIFPLYDTSH 815
           G     S   +GT + +  PL     
Sbjct: 443 GAIQFDSDLGQGTTVSVRLPLVQEEE 468


>gi|16127714|ref|NP_422278.1| tyrosine kinase DivL [Caulobacter crescentus CB15]
 gi|221236534|ref|YP_002518971.1| two-component sensor histidine kinase divL [Caulobacter crescentus
           NA1000]
 gi|21759092|sp|Q9RQQ9|DIVL_CAUCR RecName: Full=Sensor protein divL
 gi|13425208|gb|AAK25446.1| tyrosine kinase DivL [Caulobacter crescentus CB15]
 gi|220965707|gb|ACL97063.1| two-component sensor histidine kinase divL [Caulobacter crescentus
           NA1000]
          Length = 769

 Score =  282 bits (722), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 102/653 (15%), Positives = 217/653 (33%), Gaps = 37/653 (5%)

Query: 175 FSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL 234
             G     +  +     D    G     +F+   +       +           +    +
Sbjct: 134 VEGRAAGALAWLRLAPIDRADSGLPTAARFAAFVDSVVEPCWIAGADGQAIWGNAAF--V 191

Query: 235 RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294
           R     S+     A K      +   +  + +    E   +  +   +   +     L  
Sbjct: 192 RAVGAASAQAPALAGKSFDRGADAVVVEAAGKGERREALRWINVEGRRRAFRLSAQPLDG 251

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTK 353
                F          +   F +      ET++       ++S    L Y N +F  L  
Sbjct: 252 GGVGVFCADVTEI-EDVRDAFKKHVEAHDETLNHIAEAVAIFSQTRRLSYHNTAFAELWG 310

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
            +    +        +LD  +                       A L   +     +  +
Sbjct: 311 LEP-AWLADRPTHGEVLDRLRQRRRLPETIDYAGWKA-------AELARYEDLGPQADDL 362

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL----CSILEATSDGIAIIN 469
             +P  +  +        G           + +++ +   L     + L+  +D +A+  
Sbjct: 363 WDLPDGRTLKVVRQPHPLGGMLLIYSDITGELRLKAQYNALIQVQQATLDKLNDAVAVFG 422

Query: 470 REGIILSTNRAVSKLFGYPVEDILRK-PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528
            +G +   N A    +      +     F   +E   P + +      L   +     ++
Sbjct: 423 SDGRLRLHNEAFETFWNVTPHALEAAGDFEGVVELCVPRLHDLSFWRELKGRVADPDPQM 482

Query: 529 T-----LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
                    T + +++  +             +   D+++ +  ++ L+       +   
Sbjct: 483 RAPTSGEVRTSDSRIVLYQSRPLP---DGATLIAFADVTDTRDLQSALADRSAALAEAER 539

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
            K DF+  VS+E+RTPLT IIG+SE+++        + R   +   +  +   +   ++D
Sbjct: 540 LKRDFVGNVSYELRTPLTTIIGYSELLER---ADGISERGRNHVAAVRAAATQLARSIDD 596

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703
           +LD+++I++G+M L  E + + + +  A       A    + +      ++  I  D + 
Sbjct: 597 VLDMAQIDAGEMALEIEDIRVSDLLLNAQERALKDAQLGGVTLAVECEEDVGLIRGDGKR 656

Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
           + Q   +++ NA+  TP GG++ +S    +  EV L V DTG G+  +        F   
Sbjct: 657 LAQTLDHLVENALRQTPPGGRVTLS-ARRALGEVRLDVSDTGRGVPFHVQAHIFDRFV-- 713

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
                    G GLGL L KA+V+ + G   + S P  G+      P  +T  P
Sbjct: 714 ----GRDRGGPGLGLALVKALVELHGGWVALESEPGNGSTFTCHLP--ETQQP 760


>gi|322831385|ref|YP_004211412.1| multi-sensor hybrid histidine kinase [Rahnella sp. Y9602]
 gi|321166586|gb|ADW72285.1| multi-sensor hybrid histidine kinase [Rahnella sp. Y9602]
          Length = 916

 Score =  282 bits (722), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 92/344 (26%), Positives = 154/344 (44%), Gaps = 17/344 (4%)

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
           + LF Y +   +  P    +               L   +   +             +++
Sbjct: 190 ATLFAYRLMRDVTGPIRNMVNTVDR-----IRRGQLDSRVEGNMPGELSMLKNGINSMAM 244

Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIR 597
            +                D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+R
Sbjct: 245 SLTAYHEEVQQNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELR 304

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TPL  +IGF+         P       +Y   I+RS N +L I+ND+LD SK+E+GK+ L
Sbjct: 305 TPLNGVIGFTRQTLKTPLSPT----QADYLQTIERSANHLLTIINDVLDFSKLEAGKLVL 360

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAI 716
              P SL E + E + L+   A++K + +  +  NN+P  +L D   ++Q+  N+L NAI
Sbjct: 361 EHIPFSLREMLDEVVILLAHTAHDKGLELTLNVHNNVPENVLGDPMRMQQVVTNLLGNAI 420

Query: 717 HFTPSGGQ-IIISTTHTSNEEVILRVR--DTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
            FT +G   I +     +N +V L V+  DTG+G++  +  +  + F Q   S   R  G
Sbjct: 421 KFTETGNIDINVELRSQNNLQVELEVQIHDTGIGISERQQSQLFQAFRQADASISRRHGG 480

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
           TGLGL + + +V    G    +S   +G+       L    + H
Sbjct: 481 TGLGLVITQRLVKEMGGDISFYSQLNRGSTFWFHVTLELNENRH 524


>gi|255589130|ref|XP_002534846.1| two-component sensor protein histidine protein kinase, putative
           [Ricinus communis]
 gi|223524480|gb|EEF27535.1| two-component sensor protein histidine protein kinase, putative
           [Ricinus communis]
          Length = 534

 Score =  282 bits (722), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 82/309 (26%), Positives = 136/309 (44%), Gaps = 13/309 (4%)

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575
           +      +T          E +   LR   +++   +      +D    ++ + +L  AK
Sbjct: 2   LEQQVSARTERIEQQNRLLERQTEELREQERQVRRRTNELALAND--ALQENEERLYQAK 59

Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
           + AE  +  KS+FLA +SHE+RTPL  +IG                   E       +  
Sbjct: 60  QRAEDATRQKSEFLANMSHEMRTPLAGVIGMLGFALRD---TGLKESTREQILRGQANAQ 116

Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695
            +L I+NDLLD SKIE+GK+ +     +LDEA+S   +L +  A    +        ++P
Sbjct: 117 SLLAIINDLLDFSKIEAGKLTIENIDFALDEAISHVATLFEEQAGAHSVGFAVQLDPDLP 176

Query: 696 R-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTS------NEEVILRVRDTGVG 747
           R ++ D   ++QI +N++ NA  FT SG   + +               +   V+DTG+G
Sbjct: 177 RFVVGDPTRLRQILVNLVGNAFKFTESGSVTVHVERRAEDQHDRAGRNMIRFSVQDTGIG 236

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           +    L +  + F Q   +   R  GTGLGL + + +V+   G   + STP  G+    +
Sbjct: 237 IAPDALPRLFQKFEQADATTTRRYGGTGLGLAICRQLVELMGGTIGVASTPGVGSTFSFV 296

Query: 808 FPLYDTSHP 816
            PL D   P
Sbjct: 297 LPLADGVQP 305


>gi|71908720|ref|YP_286307.1| PAS/PAC sensor signal transduction histidine kinase [Dechloromonas
           aromatica RCB]
 gi|71848341|gb|AAZ47837.1| PAS/PAC sensor signal transduction histidine kinase [Dechloromonas
           aromatica RCB]
          Length = 799

 Score =  282 bits (722), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 95/717 (13%), Positives = 216/717 (30%), Gaps = 51/717 (7%)

Query: 116 MRLCDVSDILHIDPNNHIGDLL--KRQNTWYGKTT---LWPIEGTNLYVPIDLAALPIYS 170
               ++  I+ +D +  +  +   +   T+ G+             L V   + +     
Sbjct: 109 RDAPEIQAIIWVDTDGKVEWVAPNESTATFVGEQLSGVRLAALQEALRVRRTVVSPDYRD 168

Query: 171 RNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP 230
             +  +      +   +       AL   L+                         +   
Sbjct: 169 DTQRPTHDIILPVQRGSADIGAFIALQ-SLETLLRATLPTVFTARYSLTVLDAANREVLS 227

Query: 231 PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG 290
              ++  ++  S T      ++ L                     + +            
Sbjct: 228 NSSVKPTDRQLSGTISLELPNNRL---------------GLNIVAYRVGGAWLPFVPAGL 272

Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-----FVYSHGNLFYAN 345
            +      +   +  R H    A  +E                      +   G + + N
Sbjct: 273 IIILTVIATITLIKLRQHARHRAATEEELRAAYAFRQAMSESLITGLRAIDLEGRITFVN 332

Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405
            +F  +T +   + + I                + I   +  ++      AS     I  
Sbjct: 333 AAFCRMTGFDESELVGIKPPYPYWPPEEFNRLQHNIDTALAGKA-----PASGFEMRIMR 387

Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465
              +   +            + M       +  + +  + ++E    +  ++++     +
Sbjct: 388 KNGDRFDVRLYFSPLIGTDGQQMGWMASMNDITEPKRVRVELERAHERFVTVIDGLDSAV 447

Query: 466 AIINRE-GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
            + + + G IL  NRA   +FG+          T     N   +    L         + 
Sbjct: 448 HVADVQTGEILFANRAFQNIFGFDTVGRNSAQVTAPCRPNPEWLARDPLQISAEELPCEL 507

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSCY-SLTMHDISEWKQEKNKLSHAKKIAEKESS 583
            +      T       L     +             DI++ K  +      +K  E+ S 
Sbjct: 508 FDGEIQH-TLSGHWYHLHERAIRWVDGRTVRVQIGADITDKKHIEEVNLQQQKRLEQTSR 566

Query: 584 H--KSDFLARVSHEIRTPLTAIIGF-SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
                +  + ++HE+  PL+AI  + +  +K  + G       +               I
Sbjct: 567 LITMGEMASSLAHELNQPLSAIANYCAGCVKRMQAGNYRLDDLLAAMQKASSQAERAGKI 626

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILAD 700
           +  + D+ K    K + + +P++L+E V EA +   + A      I      N+PRI+ D
Sbjct: 627 IRRMRDMVK----KGDPNRQPIALEELVDEARAFADIEAQRTGTQIIVDLPENLPRIVVD 682

Query: 701 LRSVKQIALNILSNAIHFTP----SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKA 756
              ++Q+ LN++ N I           Q+ +         + + V D G G+   ++EK 
Sbjct: 683 RIMIEQVLLNLVKNGIEAMSDVPFERRQLSLQAKVVDERMLEISVTDQGHGLAEEDIEKI 742

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
             PF           EG G+GL + +++++ + G+ ++      GT+     P+ +T
Sbjct: 743 FAPFYTTKP------EGMGIGLAICRSIIEFHQGRLWVEPRREGGTVFHFTVPIEET 793



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/254 (7%), Positives = 68/254 (26%), Gaps = 14/254 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI--DPNNHIGDLLKRQNTWYGK 146
           ID  G +  ++    +  G    +++G++               ++I   L  +    G 
Sbjct: 322 IDLEGRITFVNAAFCRMTGFDESELVGIKPPYPYWPPEEFNRLQHNIDTALAGKAPASGF 381

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND-PRALGKRLDKKFS 205
                 +  +    + L   P+   + +  G+     ++           L +  ++  +
Sbjct: 382 EMRIMRKNGD-RFDVRLYFSPLIGTDGQQMGWM--ASMNDITEPKRVRVELERAHERFVT 438

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK----DDVLKTEKYPL 261
            +  +       + +  +I        ++   + V   +           + L  +   +
Sbjct: 439 VIDGLDSAVHVADVQTGEILFANRAFQNIFGFDTVGRNSAQVTAPCRPNPEWLARDPLQI 498

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ---NNSKESFEYLSHRNHPSLSAYFDEG 318
              E        +     L+ +    +   ++     +          +   +     + 
Sbjct: 499 SAEELPCELFDGEIQHT-LSGHWYHLHERAIRWVDGRTVRVQIGADITDKKHIEEVNLQQ 557

Query: 319 ENLTPETVDKCPIP 332
           +    +T     + 
Sbjct: 558 QKRLEQTSRLITMG 571


>gi|260892913|ref|YP_003239010.1| integral membrane sensor signal transduction histidine kinase
           [Ammonifex degensii KC4]
 gi|260865054|gb|ACX52160.1| integral membrane sensor signal transduction histidine kinase
           [Ammonifex degensii KC4]
          Length = 473

 Score =  282 bits (722), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 64/244 (26%), Positives = 121/244 (49%), Gaps = 5/244 (2%)

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           +   +L       ++  + + DF+A VSHE+RTPL+ I G++E I +   G +       
Sbjct: 232 KLAAELEKRIAELKRMDAARRDFVAAVSHELRTPLSIIQGYTEAILD---GMVTPEEMKL 288

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           Y + I      +  + ++LLD+ ++E+G + +  E + L E  S+  +  Q      ++ 
Sbjct: 289 YLDTIREEVERLKRLTDELLDLRRLETGAIKIRQEKLDLGEIASQVAARFQAAPEASKLH 348

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
                +     +L D   ++Q+ +N+L NA  FTP+GG + +        EV+L V+DTG
Sbjct: 349 FHVEVSPRSL-VLGDKDRLEQVIINLLDNAFRFTPAGGSVTLRVESAPE-EVVLTVQDTG 406

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
            G+   EL    + F +   ++     G+GLGL + K +V+ + G+  + S P +G+  +
Sbjct: 407 PGIPPEELPYIWEKFYRSDKARARTTGGSGLGLAIVKQIVELHGGRVEVQSRPGEGSTFK 466

Query: 806 IIFP 809
           +  P
Sbjct: 467 VTLP 470


>gi|254470428|ref|ZP_05083832.1| sensory box sensor histidine kinase/response regulator
           [Pseudovibrio sp. JE062]
 gi|211960739|gb|EEA95935.1| sensory box sensor histidine kinase/response regulator
           [Pseudovibrio sp. JE062]
          Length = 854

 Score =  282 bits (722), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 102/639 (15%), Positives = 213/639 (33%), Gaps = 50/639 (7%)

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
           L +         +   ++   + P     ++   SS  +       + +  +     +EE
Sbjct: 99  LADHNGRIIYANQSYAELTGARGPADVRTVERVFSSDPDAADAIFRLSQAVRTGRYATEE 158

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE-------SFEYLSHRNHPSLSAYFDEGE 319
             LP       +       +     L+ ++          ++        +      +  
Sbjct: 159 VRLP--NAVGEVASGARWYRITVRPLEQDAAVGVDSGITIWQVSDITRDRTEQENSFQEL 216

Query: 320 NLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
                 +D  P  FF     G L Y N +      Y     I        L     +   
Sbjct: 217 QRVINFLDHAPCGFFSSDSTGKLVYLNATLADWLGYDLTQFISG-----ELSLKDIVRGE 271

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
            A     L  S+      S  +  +  +    L +  +                +     
Sbjct: 272 GAALVEALQGSEGEVKTESFDIDLVTRSG-TGLPVRLVHRVPFGADGLAGDSRTLVINRS 330

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
               ++  +    ++       T   IA I++ G +  TN    +LF            T
Sbjct: 331 AGNDDEEALRAAEVRFSRFFNNTPVAIASIDKNGRVERTNGPFMRLFEQGEGLGKDVKLT 390

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP--FSSCYSL 556
            F+ +N  + +   L E            ++L    + +  +  +   +          +
Sbjct: 391 EFVAENDRAALQGALEEAALGKSEIAPLDVSLEGNGDPRSATFYVSAVQDGQAGEDAAVI 450

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            + + ++ +  + + + ++K+              V+H+    LTAIIGFS+++      
Sbjct: 451 YVLETTQQRALEAQFAQSQKM-----QAIGQLAGGVAHDFNNVLTAIIGFSDLLLASHRP 505

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
              +P + +  N I ++ N    +V  LL  S+    +  L  + ++L + +++   L+ 
Sbjct: 506 T--DPAFQDIMN-IKQNANRAAGLVRQLLAFSR----RQTLRPQELALADVLADVSILLD 558

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST------- 729
               EK I ++      +  ++AD+  ++Q+ +N+  NA      GG++ I T       
Sbjct: 559 RLLGEK-IELKLVHGRELWPVMADVNQLEQVIVNLAVNARDAMEGGGEVSIRTLNVDEDA 617

Query: 730 --------THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
                        E V++ V D G GM+   ++K  +PF     S +  G+GTGLGL   
Sbjct: 618 SKTYENTRGMPPGEYVLIEVADNGHGMSQDVMDKIFEPFF----STKDVGKGTGLGLSTV 673

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820
             +V    G  +  S    GT   I FP + T+   + +
Sbjct: 674 YGIVKQTGGYVFCTSEVGVGTTFRIFFPRHITTEKEEVV 712



 Score = 68.5 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 27/264 (10%), Positives = 69/264 (26%), Gaps = 11/264 (4%)

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTK 353
                F   +                L    ++       +   +G + YAN S+  LT 
Sbjct: 59  AVVGVFSLFAMAIGLLRFISKSHRNPLAESFMNSLDDGVLLADHNGRIIYANQSYAELTG 118

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN---RENS 410
            +   D+         + +      +AI  +              RL             
Sbjct: 119 ARGPADVRTV----ERVFSSDPDAADAIFRLSQAVRTGRYATEEVRLPNAVGEVASGARW 174

Query: 411 LAMTFIPFEKANQFPENMPQ-NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469
             +T  P E+      +         +    R  +     E+ ++ + L+    G    +
Sbjct: 175 YRITVRPLEQDAAVGVDSGITIWQVSDITRDRTEQENSFQELQRVINFLDHAPCGFFSSD 234

Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPFT-VFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528
             G ++  N  ++   GY +   +    +   + +   + +   L         ++ +  
Sbjct: 235 STGKLVYLNATLADWLGYDLTQFISGELSLKDIVRGEGAALVEALQGSEGEVKTESFDID 294

Query: 529 TLGSTKEEKLLSLRIIIKKLPFSS 552
            +  +     + L +         
Sbjct: 295 LVTRSGTGLPVRL-VHRVPFGADG 317



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 49/524 (9%), Positives = 147/524 (28%), Gaps = 51/524 (9%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDV--SDILHIDPNNHIGDLLKRQNTWYGKT 147
           D +G +   ++   +  G      +   +  V  SD    D    +   ++    +  + 
Sbjct: 101 DHNGRIIYANQSYAELTGARGPADV-RTVERVFSSDPDAADAIFRLSQAVRTGR-YATEE 158

Query: 148 TLWP-----IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
              P     +     +  I +  L   +     SG   + +  + R   +     + L +
Sbjct: 159 VRLPNAVGEVASGARWYRITVRPLEQDAAVGVDSGITIWQVSDITRDRTEQENSFQELQR 218

Query: 203 KFSHLHEIKKGHSSVEKEKYDI-----FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257
             + L     G  S +     +      +        +  +   SL +     +     E
Sbjct: 219 VINFLDHAPCGFFSSDSTGKLVYLNATLADWLGYDLTQFISGELSLKD-IVRGEGAALVE 277

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK----ESFEYLSHRNHPSLSA 313
                  E  +     D  T +      +                    ++         
Sbjct: 278 ALQGSEGEVKTESFDIDLVTRSGTGLPVRLVHRVPFGADGLAGDSRTLVINRSAGNDDEE 337

Query: 314 YFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                E       +  P+    +  +G +   N  F+ L +    + +     L+  +  
Sbjct: 338 ALRAAEVRFSRFFNNTPVAIASIDKNGRVERTNGPFMRLFEQG--EGLGKDVKLTEFVAE 395

Query: 373 -PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
             + +   A++   L +S+   +       +++ N +   A  ++   +  Q  E+    
Sbjct: 396 NDRAALQGALEEAALGKSEIAPLDV-----SLEGNGDPRSATFYVSAVQDGQAGEDAAVI 450

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
            +        +  +  + +  ++ +I +            G+    N  ++ + G+    
Sbjct: 451 YVLETTQQRALEAQFAQSQ--KMQAIGQLAG---------GVAHDFNNVLTAIIGFSDLL 499

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
           +            T       +    + +    L +  L  ++ + L    + +  +   
Sbjct: 500 LASHR-------PTDPAFQDIMNIKQNANRAAGLVRQLLAFSRRQTLRPQELALADVLAD 552

Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIA--EKESSHKSDFLARVS 593
                 + D    ++ + KL H +++     + +     +  ++
Sbjct: 553 ---VSILLDRLLGEKIELKLVHGRELWPVMADVNQLEQVIVNLA 593



 Score = 43.1 bits (100), Expect = 0.20,   Method: Composition-based stats.
 Identities = 37/309 (11%), Positives = 78/309 (25%), Gaps = 16/309 (5%)

Query: 87  WNIDAHGYLKEISEELPKTIGNY-AFKMIGM-RLCDVSDILHIDPNNHIGDLLKRQNTWY 144
           ++ D+ G L  ++  L   +G      + G   L D+           +        T  
Sbjct: 231 FSSDSTGKLVYLNATLADWLGYDLTQFISGELSLKDIVRGEGAALVEALQGSEGEVKTES 290

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
               L    GT   +P+ L     +  +      R   I       ND     +  + +F
Sbjct: 291 FDIDLVTRSGTG--LPVRLVHRVPFGADGLAGDSRTLVINR--SAGNDDEEALRAAEVRF 346

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS----LTEYYAHKDDVLKTEKYP 260
           S          +   +   +     P   L  + +       LTE+ A  D         
Sbjct: 347 SRFFNNTPVAIASIDKNGRVERTNGPFMRLFEQGEGLGKDVKLTEFVAENDRAALQGALE 406

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
                +S +   +     N +  +   Y   +Q+        + +    +     +    
Sbjct: 407 EAALGKSEIAPLDVSLEGNGDPRSATFYVSAVQDGQAGEDAAVIYVLETTQQRALEAQFA 466

Query: 321 LTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
            + +            + G     N     +  +  +  +                  NA
Sbjct: 467 QSQKM-----QAIGQLAGGVAHDFNNVLTAIIGFSDL-LLASHRPTDPAFQDIMNIKQNA 520

Query: 381 IKPVMLYRS 389
            +   L R 
Sbjct: 521 NRAAGLVRQ 529


>gi|52548497|gb|AAU82346.1| signal transduction histidine kinase [uncultured archaeon
           GZfos17A3]
          Length = 424

 Score =  282 bits (722), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 80/248 (32%), Positives = 136/248 (54%), Gaps = 4/248 (1%)

Query: 563 EWKQEK-NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           E K  +  K        E+ +  K+DFL+  SHE+RTPLT +    ++++    G L + 
Sbjct: 166 ETKNAELKKAMEHMADLEEVTRMKTDFLSITSHELRTPLTPMKSQLQMLQEGYMGKL-DK 224

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
           +  +    + R+   + +++ D+LDIS+IE+G++ L F  ++L++AV EAI + + +A  
Sbjct: 225 KQEKSIEVVLRNLTRLENLIGDILDISRIEAGRIKLSFNSMNLNDAVKEAIKMQEAFAKG 284

Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
           K I IR   A  +P I+ D   ++Q   N+L+NAI F+   G++II T     + V   +
Sbjct: 285 KNIEIRAKLAE-MPNIIGDAERLRQAIGNLLNNAIKFSEKTGKVIIETK-RLGKNVRFSI 342

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            D G+G++  + +K  KPF QI +S      GTGLGL + K ++ A+ GK +  S   KG
Sbjct: 343 TDYGIGISKTDQKKLFKPFTQIDSSMGREHVGTGLGLAITKGIIQAHNGKIWAESELGKG 402

Query: 802 TLIEIIFP 809
           +    + P
Sbjct: 403 STFYFVIP 410


>gi|239909145|ref|YP_002955887.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239799012|dbj|BAH78001.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 581

 Score =  282 bits (722), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 81/383 (21%), Positives = 154/383 (40%), Gaps = 30/383 (7%)

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL--EQN 504
           +   + ++ +I E    G+ +  R+   +  N   ++L G P E ++ +         + 
Sbjct: 53  LAQALREMETIFENALVGMVLA-RDNRFVKINARGAELLGCPGEQLIGRTAEALFDAPEA 111

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII---IKKLPFSSCYSLTMHDI 561
             + +     ++    L             +   L+LR     I     +        DI
Sbjct: 112 YQAFVRQAYDDMRQHGLHVG---EHQFLRPDGTRLTLRTAARQISPGNAAEGVVWAFDDI 168

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           ++ K+   +L  +K+ AE  S  K+ FLA +SHE+RTPL  I+G ++++ ++     G+ 
Sbjct: 169 TDQKRLAEELLASKRAAEAASRAKTQFLANISHELRTPLNGILGIAQLLLDKG----GDE 224

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
              EY   I +S   + +IV +LLD+S +E+G++ L      L   ++  +      +  
Sbjct: 225 ETREYLGVIRQSAATLTNIVGELLDLSNVEAGRLRLAPREFELAAELTPLLRNFMAQSLP 284

Query: 682 KRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH--------- 731
           +       F   +P  I+ D   +KQI +N++ NA  +T  G  + +             
Sbjct: 285 RSFEFSYFFDPGLPERIIGDANRIKQILINLVGNAFKYTRRG-HVTVRVAPGGEAAGPGA 343

Query: 732 ------TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
                      + L V DTG+G+         +PFG   +    +  G GLGL +A+ + 
Sbjct: 344 EGFAAPEGRARLRLVVEDTGIGIEPGRERSIFEPFGIGEDYLTKKYSGAGLGLAIARRLA 403

Query: 786 DANMGKFYIFSTPAKGTLIEIIF 808
               G     S P +G+      
Sbjct: 404 RMMGGDVTFVSEPGRGSTFTATL 426



 Score = 38.9 bits (89), Expect = 4.1,   Method: Composition-based stats.
 Identities = 22/239 (9%), Positives = 58/239 (24%), Gaps = 14/239 (5%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL--LKRQNTWYGKTT 148
                 +I+    + +G    ++IG     + D               +++     G+  
Sbjct: 75  RDNRFVKINARGAELLGCPGEQLIGRTAEALFDAPEAYQAFVRQAYDDMRQHGLHVGEHQ 134

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREF-SGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
               +GT          L + +  R+   G    G+V       D + L + L       
Sbjct: 135 FLRPDGTR---------LTLRTAARQISPGNAAEGVVWAFDDITDQKRLAEELLASKRAA 185

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
               +     +         ++P   +    ++           + L   +    T    
Sbjct: 186 EAASRA--KTQFLANISHELRTPLNGILGIAQLLLDKGGDEETREYLGVIRQSAATLTNI 243

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
                +  +          + F      +     +++     S    +     L    +
Sbjct: 244 VGELLDLSNVEAGRLRLAPREFELAAELTPLLRNFMAQSLPRSFEFSYFFDPGLPERII 302


>gi|229028788|ref|ZP_04184892.1| hypothetical protein bcere0028_8950 [Bacillus cereus AH1271]
 gi|228732520|gb|EEL83398.1| hypothetical protein bcere0028_8950 [Bacillus cereus AH1271]
          Length = 883

 Score =  282 bits (722), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 79/338 (23%), Positives = 150/338 (44%), Gaps = 18/338 (5%)

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            +D++++            +    +  +L      T E        + +   L++  ++L
Sbjct: 382 HQDLIQQTVDNLGLTIHSIMGRMRIQTLLHESQAMTEELQVQSEELQTQAEELQMQAEEL 441

Query: 549 PFSSCYSLTMHDISEWKQEK-----NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
             ++    +  + +E K        ++L        + S +KS+FLA +SHE+RTPL +I
Sbjct: 442 RTTNEQLESRTEEAEQKTADLQITKSELEEKASELLRSSKYKSEFLANMSHELRTPLNSI 501

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +  SE++K      L +    E A  I  SG  +L ++ND+LD+SK+E+GK+++ FE  +
Sbjct: 502 LLLSEMLKENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDIIFEATN 560

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSG 722
           + +  +         A +K +      ++ IP +   D + ++QI  N+LSNA  FT  G
Sbjct: 561 ISDMAANMHQNFLHIAAQKNVEFTIEDSDIIPDLFYTDAKRIEQIIKNLLSNAFKFTEKG 620

Query: 723 -----------GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
                        +       SN+ + + V+DTG+G+   + +   + F Q   +   + 
Sbjct: 621 FVSLHFDSIETANLSHEMQSISNDWMKISVKDTGIGIAKEQHQLIFEAFQQADGATIRKY 680

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            GTGLGL + K       G   + S   +G+   +  P
Sbjct: 681 GGTGLGLSICKEFARLLGGWITLESNVGEGSTFTVYIP 718


>gi|167630635|ref|YP_001681134.1| signal transduction histidine kinase, putative [Heliobacterium
           modesticaldum Ice1]
 gi|167593375|gb|ABZ85123.1| signal transduction histidine kinase, putative [Heliobacterium
           modesticaldum Ice1]
          Length = 490

 Score =  282 bits (722), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 78/506 (15%), Positives = 181/506 (35%), Gaps = 43/506 (8%)

Query: 317 EGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
           + ++      +   +   +    G    AN +F  +  Y   + +               
Sbjct: 7   KEQDDYRLIFEHAAVGLCLNDLEGKCLKANKAFCSIVGYSEQELL------HMRFQDFSH 60

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
            D+   +   L R     +     L     NR   + +        +Q+   +       
Sbjct: 61  PDDVETEGEYLRRLHSGELDG-YTLEKRYINRSRLIWVQLTIVPIKDQYGRLVYTLAQVQ 119

Query: 436 EDVDTRINKRKMEIEVMQLC-----------SILEATSDGIAIINREGIILSTNRAVSKL 484
           +  + +  + ++  +   L                 + D + ++  +G     N A S +
Sbjct: 120 DITEEKRIEAELHSQTELLREERDSAENQIRQFFSLSVDLMCVVGMDGYYKQINSAFSHV 179

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
            GY  E+++  P+   + ++    +     E      +   +       K+     +   
Sbjct: 180 LGYSEEELMATPYLSLIHEDDQIKVKALNWEQFKS--QPLRDLEVRHRCKDGSYRWISWT 237

Query: 545 IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
                 +        D++  KQ + +L    ++            A + HEIR P+T + 
Sbjct: 238 SVVNLQTGLIYGVGRDVTVQKQLEQELLSIDRLNIIA-----RMAAGLGHEIRNPMTTVR 292

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           GF +++         N     Y   +    +    I+ + L  ++    + +   +P +L
Sbjct: 293 GFLQIMSKMD----ENEERRRYFELMISELDRANAIITEFLSFTR----RKSKDPQPSNL 344

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724
              V +   L+Q  A  +   I+   A ++P ++ D + ++Q+  N++ N +     G  
Sbjct: 345 KRLVEDFFPLLQADALREDKWIQLELA-DVPDLILDEKEIRQLLFNLVRNGLEAMAPGKC 403

Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
           + I T    ++ V+L++ D G G+++ +++    PF    +      +GTGLGLP+A  +
Sbjct: 404 VTIRTAV-DDDVVVLQIEDQGSGISDKDMKNLGVPFFTTKD------KGTGLGLPIAYNI 456

Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPL 810
              +  K  + S+  KG+   + FP+
Sbjct: 457 ASRHKAKITVESSS-KGSCFSVHFPI 481



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 61/153 (39%), Gaps = 12/153 (7%)

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
           +  E      I E  + G+ + + EG  L  N+A   + GY  +++L   F  F   +  
Sbjct: 5   LSKEQDDYRLIFEHAAVGLCLNDLEGKCLKANKAFCSIVGYSEQELLHMRFQDFSHPDDV 64

Query: 507 SVMNHYLTEILSLDLRQ-TLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SLTMHDI 561
                YL  + S +L   TLEK  +  +   +L+ +++ I  +             + DI
Sbjct: 65  ETEGEYLRRLHSGELDGYTLEKRYINRS---RLIWVQLTIVPIKDQYGRLVYTLAQVQDI 121

Query: 562 SEWKQEKNKLSHA----KKIAEKESSHKSDFLA 590
           +E K+ + +L       ++  +   +    F +
Sbjct: 122 TEEKRIEAELHSQTELLREERDSAENQIRQFFS 154



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 46/391 (11%), Positives = 106/391 (27%), Gaps = 32/391 (8%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D  G   + ++     +G    +++ MR  D S    ++        L       G T  
Sbjct: 27  DLEGKCLKANKAFCSIVGYSEQELLHMRFQDFSHPDDVETEGEYLRRLHSGE-LDGYTLE 85

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
                 +  + + L  +PI  +            V     +    A      +      +
Sbjct: 86  KRYINRSRLIWVQLTIVPIKDQYGRLV--YTLAQVQDITEEKRIEAELHSQTELLREERD 143

Query: 210 IKKG--------------HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255
             +                  ++     I S  S       +  +++      H+DD +K
Sbjct: 144 SAENQIRQFFSLSVDLMCVVGMDGYYKQINSAFSHVLGYSEEELMATPYLSLIHEDDQIK 203

Query: 256 TEKYPLLTSEESSLPEQEDFHT-INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
            +       +   L + E  H   + +                             L   
Sbjct: 204 VKALNWEQFKSQPLRDLEVRHRCKDGSYRWISWTSVVNLQTGLIYGVGRDVTVQKQLEQE 263

Query: 315 FDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
               + L    + +       +   N       FL +     +D+ E       L+ +  
Sbjct: 264 LLSIDRL--NIIARMAAG-LGHEIRNPMTTVRGFLQIM--SKMDENEERRRYFELMISEL 318

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
              N  I   + +   ++     + L  +  +        F P  +A+   E+       
Sbjct: 319 DRANAIITEFLSFTRRKSKDPQPSNLKRLVED--------FFPLLQADALREDKWIQLEL 370

Query: 435 PEDVDTRINKRKMEIEVMQL-CSILEATSDG 464
            +  D  ++++++   +  L  + LEA + G
Sbjct: 371 ADVPDLILDEKEIRQLLFNLVRNGLEAMAPG 401


>gi|304406484|ref|ZP_07388140.1| integral membrane sensor hybrid histidine kinase [Paenibacillus
           curdlanolyticus YK9]
 gi|304344542|gb|EFM10380.1| integral membrane sensor hybrid histidine kinase [Paenibacillus
           curdlanolyticus YK9]
          Length = 1088

 Score =  282 bits (722), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 68/253 (26%), Positives = 124/253 (49%), Gaps = 5/253 (1%)

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           +   ++    +        K +FLAR SHE+RTPL  IIG +E + +   G   +     
Sbjct: 414 KAFRQVEQLSERLLSLDKLKDEFLARTSHELRTPLHGIIGLTESLLDGPAGSRLSAEENG 473

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           +   I  SG  +  +VND+LD SK+ + ++ LH   +++ + V   + L++  A  K +L
Sbjct: 474 HLQLIRSSGQRLAHLVNDILDFSKLRNREIQLHPVTINVHQIVELVLHLLRPLAEGKGLL 533

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +       + ++ AD   + Q+  N++ NA  FT  G  ++IS    +  ++ + ++DTG
Sbjct: 534 LINEVPPAL-QVRADENRLHQMLHNLVGNATKFTLQG-HVVISARKQAR-QITINIKDTG 590

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+    L    + F Q+  +   R  GTG+GL + K +V+ + G+ +  STP  G+   
Sbjct: 591 IGIAQESLGVIFESFEQLDPTTNSRFGGTGIGLSITKKLVELHGGRIWAESTPGLGSSFS 650

Query: 806 IIFPLYDTSHPHD 818
              P  + S   D
Sbjct: 651 FTLP--EASEETD 661


>gi|196230439|ref|ZP_03129301.1| PAS/PAC sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
 gi|196225369|gb|EDY19877.1| PAS/PAC sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
          Length = 657

 Score =  282 bits (722), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 104/491 (21%), Positives = 196/491 (39%), Gaps = 14/491 (2%)

Query: 328 KCPIPFFVYSHGNLFYAN-PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
             P    +         N  +  +L   +++   E A  L+ L   P  SD   +     
Sbjct: 30  GVPTLICLNLADLATRINCDAGAVLLAEEALASPEFASFLAALRAQPTWSDLPILLLTHS 89

Query: 387 Y-RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
             R   T I    R  T     E   + T +             Q  +     +    +R
Sbjct: 90  APREHATAIVIRLRPATFVTLLERPFSTTTLISSVEAALRSRQRQWQVRDLLAEREAAQR 149

Query: 446 KMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVED-ILRKPFTVFLEQ 503
            +     +L    +A + G        G ++  N      FG P    +  + F   L  
Sbjct: 150 ALAESEERLRLATDAANVGTWDFFPLTGELI-WNDHCRAHFGLPPGATVNYQVFLAGLHP 208

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH---- 559
           +    M+  +  +LS +    +++        + +        +  F+   ++       
Sbjct: 209 DDRVRMDGVIAAMLSPEGNGRMDEEYRTIGFTDGVERWIAARGRTTFADGRAVRFTGTAV 268

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           DI+E K+ + ++  A   AE  ++ K  FLA +SHE+RTPLT ++     + +    P  
Sbjct: 269 DITERKRNEERIREAMAQAEAANAAKDHFLATLSHELRTPLTPVLMS---LADHVTNPTL 325

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL-Y 678
                +    I R+  L   +++DLLD++++  GK+ LH E V +   + EA+ +     
Sbjct: 326 PADLRDDLAMIRRNVELEARLIDDLLDLTRVSRGKIELHTEMVDVHLVLQEALEICTAND 385

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738
              ++I++          + AD   ++QI  N+++NA+ F+P+G ++ I T++     V 
Sbjct: 386 TVRRQIVVCLETGAKQHHLQADRARLQQIFWNLINNALKFSPNGSRVNIRTSNPRPNRVA 445

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST- 797
           + VRD G+G+   +L      F Q   S   R  G GLGL ++KA+V+ + G+ +  S  
Sbjct: 446 IEVRDEGIGIAPEKLPHLFDAFEQGGRSVTKRFGGLGLGLAISKALVELHNGQIHAHSEG 505

Query: 798 PAKGTLIEIIF 808
             +G    + F
Sbjct: 506 QNRGATFTVEF 516


>gi|239928573|ref|ZP_04685526.1| sensory histidine kinase [Streptomyces ghanaensis ATCC 14672]
          Length = 1800

 Score =  282 bits (722), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 121/739 (16%), Positives = 259/739 (35%), Gaps = 58/739 (7%)

Query: 120  DVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFR 179
            D++  + I+    +  L    NT     TL         V  ++    I     +  G  
Sbjct: 859  DLTRQVSIEARGEVAQLADTINT--MVKTLSAFAEQVTKVAREVGTDGILGGQAQVPGVA 916

Query: 180  GFGIVHVNRVDNDPRALGKRLDKKFSHL---HEIKKGHSSVEKEKYDIFSQQSPPPHLRM 236
            G           +  A       +   +      K   +            +       M
Sbjct: 917  G--TWKDLTESVNQMASNLTGQVRNIAMVTTAIAKGDLTKKIDIDARGEILELKTTINTM 974

Query: 237  KNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTI-----NLNQYTKKQYFGT 291
             +++SS  E        + TE    L  +         +  +      +     +Q    
Sbjct: 975  VDQLSSFAEEVTRVAREVGTEGQ--LGGQARVRDVDGTWRDLTESVNEMAGNLTRQVRAI 1032

Query: 292  LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLL 351
             +  +  +   L+ +     S    E ++   + +             +    N + +  
Sbjct: 1033 ARVATAVTRGDLNLKIDVDASGEIQELQDYINKMIANLRDTTIANKEQDWLKGNLARISA 1092

Query: 352  TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI-AASARLHTIQWNRENS 410
                  D +E    L      P +S  +    + +   D   +  A      ++      
Sbjct: 1093 LMQGRRD-LEDVASLIMSELTPVVSAQHGAFFLAMPLVDGEDVSDADDDQFELRMLGSYG 1151

Query: 411  LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470
             +M  +P                +   +        ++I       + EA    + ++  
Sbjct: 1152 YSMGSMPTSFRPGEGLIGTAAVEKRTILVENAPTGYLKISS----GLGEAPPAQVIVLPV 1207

Query: 471  --EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY-----LTEILSLDLRQ 523
              EG +L       +L  +     ++K F   + +   + +N          +L      
Sbjct: 1208 LFEGKVLGV----VELASFTPFTAIQKDFLNQIAEMIATSVNTISVNTKTERLLKQSQEL 1263

Query: 524  TLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT-MHDI----SEWKQEKNKLSHAKKIA 578
            T +     +  E++  +L+    +L   +        DI    +E ++ +  L    +  
Sbjct: 1264 TEQLRERSAELEQRQKALQASNAELEEKAELLARQNRDIEVKNTEIEEARQVLEERAEQL 1323

Query: 579  EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
                 +KS+FLA +SHE+RTPL +++  ++++ +   G L  P+ +E+A  I  +G+ +L
Sbjct: 1324 AVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNAEGNLS-PKQVEFAETIHGAGSDLL 1382

Query: 639  DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RI 697
             ++ND+LD+SK+E+GKM++    ++L + V    +  +    EK + +    +  +P  +
Sbjct: 1383 QLINDILDLSKVEAGKMDVSPTRIALVQLVDYVEATFRPLTAEKGLDLSVRVSPELPATL 1442

Query: 698  LADLRSVKQIALNILSNAIHFTPSGGQIII--------------------STTHTSNEEV 737
              D + + Q+  N+LSNA+ FT SG   ++                    S T    + +
Sbjct: 1443 HTDEQRLLQVLRNLLSNAVKFTDSGSVELVIRPARDDVPQAIREQLLEAGSLTDPDADLI 1502

Query: 738  ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
               V DTG+G+   ++    + F Q   +   +  GTGLGL +++ +     G+ +  S 
Sbjct: 1503 AFSVSDTGIGIAASKMRVIFEAFKQADGTTSRKYGGTGLGLSISREIAQLLGGEIHAQSE 1562

Query: 798  PAKGTLIEIIFPLYDTSHP 816
            P +G+   +  PL+ +  P
Sbjct: 1563 PGRGSTFTLYLPLHPSELP 1581


>gi|238760518|ref|ZP_04621653.1| Histidine kinase [Yersinia aldovae ATCC 35236]
 gi|238701270|gb|EEP93852.1| Histidine kinase [Yersinia aldovae ATCC 35236]
          Length = 1270

 Score =  282 bits (722), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 89/386 (23%), Positives = 163/386 (42%), Gaps = 13/386 (3%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           R     +   ++Q  SI+ A    + I   +G +   N   +      + D+L       
Sbjct: 581 RRQAALLHARLLQQESIINALPFAVFIRTSDGELAVYNSHFANAHQDKLNDLLNHNNEHA 640

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-YSLTMH 559
               T  +          +   +  + + L      +L  + + I  L  +         
Sbjct: 641 NWPMTNPLDREIDKYCRLVLTDRKSQLVDLSLEINGELRDIFLWIIPLDNTERSLLGGWL 700

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           DIS+ K  + +L  A+  AE  +  KS FLA +SHE+RTP+ AI+G  E+          
Sbjct: 701 DISQRKTVERELEAARVEAESANRTKSTFLATISHELRTPMYAIMGLLELEIRS-----D 755

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
            P        + +S   ++ +++D++D +KIE+G++++H       + +    S+ Q  A
Sbjct: 756 KPVEKNTLVTVSKSAQSLMLLLDDIIDSAKIEAGQLSVHPAVTDFRQEIERMFSIYQPIA 815

Query: 680 NEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQ---IIISTTHTSNE 735
           +E+ +       N IP++ + D+  V+Q+  N+L NA+ FT  G     I    +     
Sbjct: 816 DERGLHFSGWLDNQIPQLLMVDMLRVRQVMGNLLGNALKFTEQGSVSVDITWEASDEEQG 875

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            + + + DTG+G++        +PF Q    +  R  G+GLGL +   ++    G+  + 
Sbjct: 876 VMNIDITDTGIGISPAAQATLFQPFSQANEGKSPRFGGSGLGLWICHQLIHKMGGQITLE 935

Query: 796 STPAKGTLIEIIFPLYDTSH---PHD 818
           S   KGT + I  PL   S    P D
Sbjct: 936 SQLGKGTSLFITLPLDIASSDDLPQD 961


>gi|189347557|ref|YP_001944086.1| multi-sensor hybrid histidine kinase [Chlorobium limicola DSM 245]
 gi|189341704|gb|ACD91107.1| multi-sensor hybrid histidine kinase [Chlorobium limicola DSM 245]
          Length = 990

 Score =  282 bits (722), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 103/577 (17%), Positives = 205/577 (35%), Gaps = 41/577 (7%)

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
               +   L+ E       E   L +Q      N+    K       +   ++    L  
Sbjct: 8   ELLSRFLELEKESQRSRQIEFELLEKQAVLREQNIKLIRKSIELSDYKRQLEDKNYELEL 67

Query: 306 RNHPSLSAY--FDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEI 362
                  A     E EN     +   P           + Y N  F  L+     + + +
Sbjct: 68  SRRELEKALVSLRESENTLSTVLVNSPDTIIAVDIRHRIIYFNRDFP-LSHRSLQEGLHL 126

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
              +             A+       S  + I+            +              
Sbjct: 127 CDCIVPSSHDEYHRAIEAVFRSGHAHSLESLIS----------QGDGGTVEVESKLGPCF 176

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
                     +  +  + +  +R+++  + +L            ++ RE   +     + 
Sbjct: 177 INGTVGSVVILVSDITERKRMERELKRSLDELERFNR------VMVGREMRSIELKAELD 230

Query: 483 KLFG-YPVEDILRKPF------TVFLEQNTPSVMNHYL--TEILSLDLRQTLEKITLGST 533
           +L G    +D+           +  L     +  + +L   E +  +L +  E   +  +
Sbjct: 231 RLRGGLASDDLAGMDVNRKQVSSCSLNSMPAAGFSDWLCPAENIQDELSEEPEGDCMFKS 290

Query: 534 KEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
           ++   L   +    L  +      M      ++ +       K A + +  KS FLA +S
Sbjct: 291 RQRSALLNLVEDADLARNQLIETNMKLGESVRKTEE----MAKSAREANEAKSRFLANMS 346

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HEIRTP+  +IG S+++ +       +    +Y   I  SG  +L I+ND+LD SKIE+ 
Sbjct: 347 HEIRTPMNGVIGMSDILLDTSL----DIEQRKYVETIISSGKNLLKIINDILDFSKIEAN 402

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNIL 712
           ++ L     +L + + +  +L+   A EK + +       +P R+  D   ++QI +N++
Sbjct: 403 RLELDHIDFNLIDLLEDVGTLLGFEAYEKELELVFRTGPTLPLRLKGDPARLRQILVNLV 462

Query: 713 SNAIHFTPSGGQII-ISTTHTSNEEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
           SNAI FT  G  ++       ++E+V++   V DTG+G+         +PF Q   +   
Sbjct: 463 SNAIKFTHEGEVVLDAVLERETSEQVVIGFTVSDTGIGIEEERKGSIFEPFVQADGTTIR 522

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           +  GTGLGL ++  + +       + S    G++   
Sbjct: 523 KYGGTGLGLSISSHLAEKMGSGITVQSRIGTGSVFRF 559


>gi|332992628|gb|AEF02683.1| two-component hybrid sensor and regulator [Alteromonas sp. SN2]
          Length = 687

 Score =  282 bits (722), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 76/259 (29%), Positives = 127/259 (49%), Gaps = 9/259 (3%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I    +   K       A++ +  KS+FL+ +SHE+RTP+  + G  E+  +        
Sbjct: 173 IQHLYEASEKAETEALKAQEANRAKSEFLSSMSHELRTPMNGLFGMIELAMDNPSKSEN- 231

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
                Y      +G  +L ++ND+LD+SKIE+GK+ +   PV L + + E +S+ ++Y  
Sbjct: 232 -----YLRKAKTAGRQLLTLINDILDLSKIEAGKIVVGKGPVDLLQLLDEVVSIQRIYCQ 286

Query: 681 EKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEE-V 737
            K +    +    + P I  D+  + QI  N+LSNAI FT SG   + +S   T++   +
Sbjct: 287 NKGLDFHYNKQQTLAPIIQGDITRIAQILHNLLSNAIKFTESGSVTLSVSQAVTASGNTL 346

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
           +  V+DTG+G+ + +L    + F Q   S      GTGLGL +AK +     G     ST
Sbjct: 347 LFSVKDTGIGIDSDKLSTIFQKFEQADQSTTRHYGGTGLGLSIAKELAQLMDGNILATST 406

Query: 798 PAKGTLIEIIFPLYDTSHP 816
              G+   +  P+ + S P
Sbjct: 407 LGAGSEFTLTLPVVEESLP 425


>gi|322420355|ref|YP_004199578.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M18]
 gi|320126742|gb|ADW14302.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M18]
          Length = 947

 Score =  282 bits (722), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 94/653 (14%), Positives = 212/653 (32%), Gaps = 56/653 (8%)

Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL--RMKNKV 240
           +               RL  +   + +     + ++  +  +     P      R   + 
Sbjct: 176 LAKEIEGHKKSEIANARLLLRQRAILDNLPMMAWLKDTESRLEMINEPYARACGRTIEEC 235

Query: 241 SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ-EDFHTINLNQYTKKQYFGTLQNNSKES 299
              T+      ++ +           S      E+                 L +     
Sbjct: 236 IGKTDLELFPREMAEEFLADDRAVCVSGRKRHFEEQIATQDGIRWHSTSKTPLFDELGRV 295

Query: 300 FEYLSHRNHPSLSAYFD----EGENLTPETVDKCP-IPFFVY-SHGNLFYANPSFLLLTK 353
                     +     +    E E      ++  P +    Y   G + + N +  +L  
Sbjct: 296 VGTTGIARDITERKQAEKALVESEERFRSLMENIPNVAVQGYALDGTVLFWNRASEILYG 355

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
           Y + + +  A  L   L  P    +   + +   +   T I A   L  ++ +       
Sbjct: 356 YSAQEAL-GANLLE--LIIPDEMQDGVKEAIGWMQESGTPIPA-GELLLMRKDGSRVPVF 411

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
           +                  ++ +    +  +  +   +    + LE+T+DGI ++NR G 
Sbjct: 412 SSHALLSP--VGRPPEFFCVDVDLTKRKKAEDLLSYAISLTNASLESTADGILVVNRNGK 469

Query: 474 ILSTNRAVSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
           I   NR   +L+  P E ++   K   +    +  +  + +L ++  L          L 
Sbjct: 470 IAQWNRKFIELWHVPEELLVTDVKDPVLAYLTSQMAHPDEFLAKVTELYEHPEASSQDLL 529

Query: 532 STKEEKLLSLRIIIKKLPFS-SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
           +  + +L        ++         +  D++  K+ + +     ++  ++         
Sbjct: 530 TLADGRLFDRYSQPLEIGKEIVGRFWSFRDVTGHKRHQQE-----QLKIEKLESLGLLAG 584

Query: 591 RVSHEIRTPLTAIIG---FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
            ++H+    LT ++G   F++++ +                  +++     ++   LL  
Sbjct: 585 GIAHDFNNILTGVMGNISFAQMLLDPSHKSFKP------LAEAEKASLRATELARQLLTF 638

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707
           ++          + +SL + V+E++ LV   +N K I+      +    I AD   + Q+
Sbjct: 639 AR----GGEPVRKIISLQDVVNESVELVLSGSNVKGII---DIPDATHAIDADEGQLSQV 691

Query: 708 ALNILSNAIHFTPSGGQIIISTTHT-----------SNEEVILRVRDTGVGMTNYELEKA 756
             NI+ NA    P GG + ++  +                V L + D G GM    + K 
Sbjct: 692 LHNIVINAAQAMPGGGTLTVTARNETLTETNDMSLNPGSYVRLTIADRGCGMPEAVMTKI 751

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             P+    ++      G GLGL  A ++V  + G   + S   +GT+  I  P
Sbjct: 752 FDPYFTTKSA------GNGLGLASAYSIVTRHGGHIGVDSVLDRGTVFTIHLP 798



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 40/414 (9%), Positives = 110/414 (26%), Gaps = 30/414 (7%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK 146
           W  D    L+ I+E   +  G    + IG    ++      +        +       G+
Sbjct: 209 WLKDTESRLEMINEPYARACGRTIEECIGKTDLELFPREMAEEFLADDRAV----CVSGR 264

Query: 147 TTLWP--IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
              +   I   +       +  P++       G  G  I                 +++F
Sbjct: 265 KRHFEEQIATQDGIRWHSTSKTPLFDELGRVVGTTG--IARDITERKQAEKALVESEERF 322

Query: 205 SHLHEIKK--GHSSVEKEKYDIFSQQSPPPHLRMKNKVS----SLTEYYAHKDDVLKTEK 258
             L E            +   +F  ++         + +     L      +      E 
Sbjct: 323 RSLMENIPNVAVQGYALDGTVLFWNRASEILYGYSAQEALGANLLELIIPDEMQDGVKEA 382

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY----LSHRNHPSLSAY 314
              +    + +P  E                  L +      E+    +           
Sbjct: 383 IGWMQESGTPIPAGELLLMRKDGSRVPVFSSHALLSPVGRPPEFFCVDVDLTKRKKAEDL 442

Query: 315 FDEGENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
                +LT  +++       V   +G +   N  F+ L      +++ +      +L   
Sbjct: 443 LSYAISLTNASLESTADGILVVNRNGKIAQWNRKFIELWHVP--EELLVTDVKDPVLAYL 500

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
                +  + +           AS++      +      +     +      E + +   
Sbjct: 501 TSQMAHPDEFLAKVTELYEHPEASSQDLLTLADGR----LFDRYSQPLEIGKEIVGRFWS 556

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST--NRAVSKLF 485
             +    + ++++ ++++ +L S+      G    +   I+     N + +++ 
Sbjct: 557 FRDVTGHKRHQQE-QLKIEKLESL--GLLAGGIAHDFNNILTGVMGNISFAQML 607


>gi|189502365|ref|YP_001958082.1| hypothetical protein Aasi_0999 [Candidatus Amoebophilus asiaticus
            5a2]
 gi|189497806|gb|ACE06353.1| hypothetical protein Aasi_0999 [Candidatus Amoebophilus asiaticus
            5a2]
          Length = 2272

 Score =  282 bits (722), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 106/614 (17%), Positives = 211/614 (34%), Gaps = 56/614 (9%)

Query: 241  SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF 300
             SL++   +++  L +    LL         Q     I L +         ++N   +  
Sbjct: 1487 PSLSKLAINQETTLSSNTLRLLDLSSILKASQTISSEIELPKLLHGMLQIIIENVGAQKG 1546

Query: 301  EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSV--D 358
              L      SLS   +   + T   + + P+  + +    + +    F           D
Sbjct: 1547 AVLFVEADDSLSVQAEYATDGTITILQQIPLEDWTHGAHIVIHHVKRFHQWIVIDDATKD 1606

Query: 359  DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL--HTIQWNRENSLAMTFI 416
            ++  A        +   + +    P+M +   +  +     L  H     R  +  +   
Sbjct: 1607 ELFKADP----YISQAQAKSILCIPLMSHMELKAILYVENNLMTHAFTPERAQTALILTA 1662

Query: 417  PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ-----LCSILEATSDGIA--IIN 469
                + Q      +     + +  +  +R++  E +      L   LEA+  G      +
Sbjct: 1663 QMAISLQNARYFAEQMALTQQLAEQSARRQLAEESLHTVTHDLKLALEASRAGTWNWWFD 1722

Query: 470  REGIILSTNRAVSKLFGYPVEDILRKP--FTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
                I   +     LFG   ++       F   +       +   L +    D    LE 
Sbjct: 1723 TN-RIT-WDATHCALFGMTPDEFKGTYDAFLERVHPKDRERLKQTLEQCKEHDSFHDLEY 1780

Query: 528  ITLGSTKEEKLLSLRIIIKKLPFSSC---YSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
              +     +++++    + +   +      +    DI+E K+ + +   A + AEK+   
Sbjct: 1781 QIIWPDSSQRMMAAHGRVYRDLKTGRPIKMAGVCLDITERKKLEQERMEAFEQAEKKERQ 1840

Query: 585  KS-----------DFLARVSHEIRTPLTAIIGFSEVIKNQRFG------------PLGNP 621
            ++           +F+  V HE+R P+  I      ++ +               P+   
Sbjct: 1841 RADEAERYFKQQAEFVNTVCHEVRNPMNGISNTVSFMEEKLTSLKAYKKSLPTSLPVLEE 1900

Query: 622  ---RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
                  E    I +  N  + ++N +L+ S++E+GK  L  +P      + E I L    
Sbjct: 1901 LVQTLEEDIKTIQQCVNHQIAVINGVLNWSRLEAGKEELISKPFKPRTIIEEMIPLFTAQ 1960

Query: 679  ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT--SNEE 736
               K + +          I  D    K + +N++SNAI FT  G  I IS  +       
Sbjct: 1961 LKTKHLDLLVVLPEEAIAIKGDPERFKIVLINLISNAIKFTEKG-HIKISLQNQAVDASH 2019

Query: 737  VILRV--RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
            V L +   DTG+GMT  E     + F +       + EG+GLGL ++K ++    G   +
Sbjct: 2020 VQLTICMEDTGIGMTPEEQSHLFQQFSR---PLSSQYEGSGLGLAISKKLLGLMGGTIQV 2076

Query: 795  FSTPAKGTLIEIIF 808
             S   +G++  I  
Sbjct: 2077 DSVKGQGSVFTIHL 2090


>gi|156932728|ref|YP_001436644.1| hybrid sensory histidine kinase BarA [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156530982|gb|ABU75808.1| hypothetical protein ESA_00517 [Cronobacter sakazakii ATCC BAA-894]
          Length = 919

 Score =  282 bits (722), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 87/337 (25%), Positives = 153/337 (45%), Gaps = 17/337 (5%)

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
           A + LF + +   +  P    +               L   +   +             +
Sbjct: 189 ACAVLFAWRLMRDVTAPIRNMVNTVDR-----IRRGQLDSRVEGFMLGELDMLKNGINSM 243

Query: 540 SLRIIIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHE 595
           ++ +                D+ E  ++      +L  AKK A++ +  KS+FLA +SHE
Sbjct: 244 AMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHE 303

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           +RTPL  +IGF+ +       P       ++ N I+RS N +L I+ND+LD SK+E+GK+
Sbjct: 304 LRTPLNGVIGFTRLTLKTDLTPT----QRDHLNTIERSANNLLSIINDVLDFSKLEAGKL 359

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSN 714
            L   P  L   + E ++L+   A++K + +  S  +++P  ++ D   ++Q+  N++ N
Sbjct: 360 LLESIPFPLRSTLDEVVTLLAHSAHDKGLELTISVRHDVPDNVIGDPLRLQQVITNLVGN 419

Query: 715 AIHFTPSGGQ-IIISTTHTSNEEVILRV--RDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           AI FT  G   I++     SN +V + V  RDTG+G+   +  +  + F Q   S   R 
Sbjct: 420 AIKFTDHGNIDIVVEKRAISNNKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRH 479

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            GTGLGL + + +V+   G     S P +G+      
Sbjct: 480 GGTGLGLVITQKLVNEMGGDISFHSQPHRGSTFWFHI 516


>gi|83951998|ref|ZP_00960730.1| phosphate regulon sensor histidine kinase, putative [Roseovarius
           nubinhibens ISM]
 gi|83837004|gb|EAP76301.1| phosphate regulon sensor histidine kinase, putative [Roseovarius
           nubinhibens ISM]
          Length = 347

 Score =  282 bits (722), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 70/349 (20%), Positives = 146/349 (41%), Gaps = 29/349 (8%)

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
           +I R+  I + N     L G   E ++ + F   L       +   + + L+  + Q   
Sbjct: 21  VIGRDERIHAVNDQARALLG---EHLVGRHFITALR---QPAVMDAIEDCLASQVPQV-G 73

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
           +       ++    ++    +    +   ++  D++                E+    + 
Sbjct: 74  RYLGNDGAQDTTYRVQAAWVEFAGKAGVLVSFEDVT--------------PMERAGQMRR 119

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
           DF+A VSHE+RTPLTA++GF E ++    G         +   +    N +  +V DLL 
Sbjct: 120 DFVANVSHELRTPLTAMMGFIETLQGPARGDTAASD--RFLATMYSEANRMERLVRDLLA 177

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706
           +S++ES +     + V L   V      ++       + +      +   +  D   ++Q
Sbjct: 178 LSRVESEERVRPNQTVDLAGLVRSVAHTLRPLLENSEVTLDLELPQSDTELPGDADQLRQ 237

Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSNE------EVILRVRDTGVGMTNYELEKAMKPF 760
           +  N++ NA+ +   G  + ++ +H  N+       ++L VRD G G++   + +  + F
Sbjct: 238 VVTNLIENAVKYGGKGKTVTVTLSHAENDPMLRRDALLLSVRDEGPGISEIHIPRLTERF 297

Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            ++ + +     GTGLGL + K +V  + G+  I S   +G++  +I P
Sbjct: 298 YRVDSHRSREMGGTGLGLAIVKHIVSRHRGRLRIESELGQGSVFRVILP 346


>gi|110679868|ref|YP_682875.1| phosphate regulon sensor protein, putative [Roseobacter
           denitrificans OCh 114]
 gi|109455984|gb|ABG32189.1| phosphate regulon sensor protein, putative [Roseobacter
           denitrificans OCh 114]
          Length = 347

 Score =  282 bits (722), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 75/360 (20%), Positives = 150/360 (41%), Gaps = 31/360 (8%)

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           +L A    +  I     I+S N A   L G   + +  + +  FL       +   +  +
Sbjct: 8   VLAALPMPVLAIGGSERIVSANDAAKALLG---QGVSGRHYVTFLR---QPQLIETIAAV 61

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKK 576
           L     +  +  +    ++      R+ +  L       L+  D+S  +Q          
Sbjct: 62  LQDSQPRVSQYFSSDGIEDTTF---RVTVGVLANMRVVLLSFQDVSHLEQ---------- 108

Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
                   + DF+A VSHE+RTPLTA++GF E ++              + + ++     
Sbjct: 109 ----ADQMRRDFVANVSHELRTPLTALMGFIETLRG--PAREDAAARDRFLDIMEGEAGR 162

Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696
           +  +V DLL +S++E  +     + V+L + V      +   AN+  +++          
Sbjct: 163 MNRLVGDLLSLSRVEGNQRVRPQDRVNLSDVVQSVARTLAPLANDTSVVLECDLPQQPVI 222

Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE------VILRVRDTGVGMTN 750
           ++ D   + Q+  N++ NA+ +  SGG++ I  T  + +       V++ V D G G+  
Sbjct: 223 LIGDADQLMQVITNLVENAVKYGGSGGRVAIKLTEVARDTSLRAPGVLISVTDFGPGIDP 282

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             L +  + F +  + +     GTGLGL + K +++ + G+  I S   +G+   ++ PL
Sbjct: 283 VHLPRLTERFYRADSHRSRALGGTGLGLAIVKHIINRHRGRLRIDSELGQGSTFTVVLPL 342


>gi|228990403|ref|ZP_04150368.1| hypothetical protein bpmyx0001_11650 [Bacillus pseudomycoides DSM
           12442]
 gi|228996504|ref|ZP_04156143.1| hypothetical protein bmyco0003_10910 [Bacillus mycoides Rock3-17]
 gi|228763136|gb|EEM12044.1| hypothetical protein bmyco0003_10910 [Bacillus mycoides Rock3-17]
 gi|228768929|gb|EEM17527.1| hypothetical protein bpmyx0001_11650 [Bacillus pseudomycoides DSM
           12442]
          Length = 466

 Score =  282 bits (722), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 67/229 (29%), Positives = 117/229 (51%), Gaps = 5/229 (2%)

Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
           + +F A VSHE+RTPL+ I G+SE I +   G     +  ++   I R    +  +V+DL
Sbjct: 239 RKEFSANVSHELRTPLSYIKGYSEAILD---GVAKGQQQSKFTQLIHREAGRMQRLVHDL 295

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704
           LD++++E     L  +P+   + + + +   +L   EK + I T    +I  +  D   +
Sbjct: 296 LDLAQLEGDHFPLKKQPIVFAQLIEDVLETYELKCMEKELYISTDLDPDII-VTIDEDRM 354

Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764
           +Q+  N+L NAI +T   G I I        +  L+++DTG+G+    LE+  + F ++ 
Sbjct: 355 QQVLHNLLDNAIRYTNQNGNISIQLKKKDR-QCELKIKDTGIGIDAEHLEQLGERFYRVD 413

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
             +  R  GTGLGL + K +V  + G++ + S   KGT + I  P  + 
Sbjct: 414 KGRSRRHGGTGLGLAIVKQIVHIHDGEWRVESEKGKGTTVIIKLPANEE 462


>gi|332712371|ref|ZP_08432298.1| PAS domain S-box protein [Lyngbya majuscula 3L]
 gi|332348845|gb|EGJ28458.1| PAS domain S-box protein [Lyngbya majuscula 3L]
          Length = 375

 Score =  282 bits (722), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 73/382 (19%), Positives = 162/382 (42%), Gaps = 19/382 (4%)

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
            D +  K  +      L S++E + + IA+ +RE   +  N A+S+ FG    +++ K  
Sbjct: 6   SDRKPAKLFLSSREDLLESLVENSPECIAVFDREFRYVYANPALSQAFGIAQSELIGKTH 65

Query: 498 TVFLEQNTP-SVMNHYLTEILSLDLRQTLEKITLGSTK----EEKLLSLRIIIKKLPFSS 552
                      + +  + ++ +    + +E   +        +  L+        + F  
Sbjct: 66  HDLQMPEDFIHLWDRAMEKVFATGQEKRIEFQWITENGLQFYQSCLVPELASHGSVEFVL 125

Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
            YS  + D    +    + S + +  +  +     F    SH+++ PL  +  F+E++  
Sbjct: 126 GYSCNISD----RITNTEFSRSIEQLQNSNRELEQFAYVASHDLQEPLRKVKSFTELLVE 181

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
           +  G L      +Y  YI      +  ++ DLL  S++  G+  L FEP  + E + + +
Sbjct: 182 EYQGKLDGE-ADKYMAYIVDGVFRMQTLIKDLLAYSRL--GRSELTFEPTDIAEVLEQVL 238

Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF-TPSGGQIIISTTH 731
             + +   E   +I       +P I A+ + + ++  N++SN I F + +  +I I    
Sbjct: 239 ENLSVTIKENHAVITHD---PLPTIPANPQHMVELFQNLISNGIKFRSEATPEIHIEAQL 295

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
             ++ + + VRD G+G+ +   E+    F ++    + +  GTG+GL + + +V  + G 
Sbjct: 296 QESQWL-IGVRDNGIGIPSKYAERIFSIFQRLHG--RSKYPGTGIGLAICQKIVQCHGGN 352

Query: 792 FYIFSTPAKGTLIEIIFPLYDT 813
            ++ S    G+      P++ +
Sbjct: 353 IWVESESGVGSRFYFTLPIHQS 374



 Score = 42.3 bits (98), Expect = 0.36,   Method: Composition-based stats.
 Identities = 6/38 (15%), Positives = 11/38 (28%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI 127
           D        +  L +  G    ++IG    D+      
Sbjct: 37  DREFRYVYANPALSQAFGIAQSELIGKTHHDLQMPEDF 74


>gi|229589127|ref|YP_002871246.1| putative two-component system sensor kinase [Pseudomonas
           fluorescens SBW25]
 gi|229360993|emb|CAY47855.1| putative two-component system, sensor kinase [Pseudomonas
           fluorescens SBW25]
          Length = 989

 Score =  282 bits (722), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 113/655 (17%), Positives = 219/655 (33%), Gaps = 43/655 (6%)

Query: 169 YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228
               +     +GF +     + +          ++          +           S Q
Sbjct: 116 RDAGQVVLQAKGFALSLPFTLSHAAG-FTAEDTRRALAFGVQLSDYYGGYWASSFYASPQ 174

Query: 229 SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288
                   +  ++        +   L  E+Y  + S    L + +     +      +  
Sbjct: 175 LFVFTPNDEASLAVPGIGGLRQHRPLLREQYRGVVSRLHQLQQSQSLLLTDSRVRWVRAP 234

Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSF 348
               +N+               L A   +G       VD       V     +   +   
Sbjct: 235 LQLYKNSRSVVAMIGLDAPAALLPANQPQGMLTLAAVVDTSQ----VDEFERVLQLSVYN 290

Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
                    D +  + G   +       ++  ++  ML           A  +       
Sbjct: 291 QFTLISPQGDVLLGSLGDEQMAPLGLSFNSQGLRFKMLSEGGEHWTGLYAISYQDFLRYA 350

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI-LEATSDGIAI 467
               +       A         +  +   V      ++   E      I L     G+ +
Sbjct: 351 KWPLLGLGLTFLAAVLLGWWINHWYKTRIVIPAQRAQERLFESEAFNRIMLHNAPAGLCV 410

Query: 468 INR-EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
           + R +  +L  N+   +L G                          +  + + D   T  
Sbjct: 411 VRRSDCQLLLENQRALQLGG----------------------TAQLVEALRANDGPDTPG 448

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
           +  +    + + L + ++  +      +    +DI+    E  +L  A++ A   +  K+
Sbjct: 449 E--MCLAVQGRYLQVVVVAARYEGEDVFLCGCNDITRHVDETLQLDQARQEATAANEAKT 506

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
            FLA +SHEIRTPL  ++G  E++         + R  +Y   I  S  ++  +++++LD
Sbjct: 507 VFLATMSHEIRTPLYGVLGNLELMALTDM----SERQRQYLEIIQGSSTVLFQLISNVLD 562

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVK 705
           +SKIESG+M +   P S  + V E++      A  K + I       +P ++L D   ++
Sbjct: 563 VSKIESGQMAVEAAPFSPRQLVEESVLGFAATARNKGLQIDAEIDPQVPLQLLGDAGRIR 622

Query: 706 QIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
           QI  N+L NAI FT SG    ++ +         +  +V DTGVG+ +  LE+  KPF Q
Sbjct: 623 QILHNLLGNAIKFTESGRVRLRLTVQALLEDEVALQWQVTDTGVGIPDKALEQLFKPFYQ 682

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE--IIFPLYDTSH 815
           +   Q     G GLGL +   + +   G   + S P  G+     I  P+  ++ 
Sbjct: 683 VAGGQDGN--GAGLGLSICSRLSELMGGTMRVVSEPGLGSSFSLFITLPILSSAE 735


>gi|197116465|ref|YP_002136892.1| response receiver histidine kinase response regulator [Geobacter
           bemidjiensis Bem]
 gi|197085825|gb|ACH37096.1| response receiver histidine kinase response regulator [Geobacter
           bemidjiensis Bem]
          Length = 578

 Score =  282 bits (722), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 72/249 (28%), Positives = 130/249 (52%), Gaps = 8/249 (3%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           + K    +L  AK+ AE  +  KS FLA +SHEIRTP+  ++G +E++ +       + +
Sbjct: 175 QQKAIIAELHEAKEAAEAANRAKSQFLANMSHEIRTPMNGVLGMAELLLHSEL----DEK 230

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
              Y   + +SG  +L I+ND+L+ISKIE+G++ +   P  L E    A+ L +     K
Sbjct: 231 QKSYVKILHQSGESLLGIINDILNISKIEAGRLEIERIPFDLHETARGAVELYREVGRRK 290

Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVI 738
            + +      ++PR ++ D   ++Q+ +N+++N + FT  G    ++ +   + + + V 
Sbjct: 291 GVAVELQIEEDVPRCVVGDPSRLRQVLINVVNNGLKFTDKGSVQVRVTLVEQYQNGQYVA 350

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
             V+DTG+G+    +      F Q+  S   +  GTGLGL +AK +V+   G   + S P
Sbjct: 351 FEVKDTGIGIPADCIGDIFGLFAQVDGSTTRKYGGTGLGLAIAKQLVELMGGAIGVESEP 410

Query: 799 AKGTLIEII 807
            +G+    I
Sbjct: 411 GQGSTFTFI 419


>gi|148655755|ref|YP_001275960.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp.
           RS-1]
 gi|148567865|gb|ABQ90010.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp.
           RS-1]
          Length = 711

 Score =  282 bits (722), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 101/662 (15%), Positives = 230/662 (34%), Gaps = 52/662 (7%)

Query: 179 RGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG--HSSVEKEKYDIFSQQSPPPHLRM 236
           R   +    +  + P      +      +   +    H   +             P +  
Sbjct: 70  RAVWVCEYPQSGDAPELTLDAISGAADAMRLRRPIIVHPQEQALLARDVRVLLVAPLIAR 129

Query: 237 KNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS 296
              + +L    AH      ++   L+ +    +      H    +   + Q   TL + +
Sbjct: 130 DETLGALAICSAHATRTFDSKDVALIRALSGQIALVIMSHRSCESVERRTQELKTLNDIA 189

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYA---NPSFLLLTK 353
                 L             +  +     V+   +     + G+L +          L  
Sbjct: 190 SVVTSTLDT--REVYRLVVQQLSDYFH--VEAGSLLLVDEATGDLEFVMTIEGGEEKLAG 245

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH-TIQWNRENSLA 412
           ++      + G +        + D +         S+ T  +  + L   +        A
Sbjct: 246 FRVPAGQGVVGHVVRTGRWEIVHDVSRDPRFYRQISEATGFSTRSILCVPMIAKGRVIGA 305

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE----VMQLCSILEATSDGIAII 468
           +  +     +   E+  +       +   I   ++  +      ++ S+L +T+DGI + 
Sbjct: 306 IELLNKIGGDFDEEDALRLMRMAAFIAVAIENARLFQQVTAGRDRMASVLRSTADGILMA 365

Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528
           +  G I   N    ++ G P E ++ +     + +      +                  
Sbjct: 366 DMRGEIQIANPLAVEICGCPEESLIGRRIDDVVAELYARAHDITTPSWSQEVAVPAQISD 425

Query: 529 TLGSTKEEKLLSLRIIIKKL--PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
              ++   + + L  +             L + DI++ +  +                + 
Sbjct: 426 LAFASGAHRYVRLIRLPVYDAQNEPRGELLILRDITQERDLE--------------QLRE 471

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
           D+ + + H++R PLT+I+    +++    GP+   +  E      +    +L ++N LLD
Sbjct: 472 DYTSMLVHDLRAPLTSIMNGVMMLQRGIVGPVT-EQQQELLKIAYQGSQTMLHLINTLLD 530

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706
           ISK+E G+M+L  +P+ +   + +AI  +Q  A+ + + I    A  +P +  D   + +
Sbjct: 531 ISKMEQGRMDLDLKPLPIFSVIDQAIERLQHLASSRGVTIEQRLAPYLPPVEIDGEKIVR 590

Query: 707 IALNILSNAIHFTPSGGQIIISTTH------------------TSNEEVILRVRDTGVGM 748
           +  N+L NAI F+P+ G + I                       S + +++ V+D G G+
Sbjct: 591 VLQNLLDNAIKFSPAQGVVTIGAFLAGGTHAPPDDVPVHVTFNDSRDYLVVWVQDRGPGI 650

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
                ++  + FGQ+   +  +  GTGLGL   +  V+A+ G+ ++ S    G++     
Sbjct: 651 PPAYFQRIFEKFGQV---RGRKVRGTGLGLTFCRLAVEAHGGRIWVESEEGAGSVFAFAL 707

Query: 809 PL 810
           P+
Sbjct: 708 PI 709



 Score = 38.9 bits (89), Expect = 3.9,   Method: Composition-based stats.
 Identities = 28/240 (11%), Positives = 69/240 (28%), Gaps = 6/240 (2%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D  G ++  +    +  G     +IG R+ DV   L+   ++       ++     + + 
Sbjct: 366 DMRGEIQIANPLAVEICGCPEESLIGRRIDDVVAELYARAHDITTPSWSQEVAVPAQISD 425

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
                +  +  + L  LP+Y    E  G     I+     + D   L    +   S L  
Sbjct: 426 LAFA-SGAHRYVRLIRLPVYDAQNEPRG--ELLILRDITQERDLEQL---REDYTSMLVH 479

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
             +   +       +  +    P    + ++  +    +     L      +   E+  +
Sbjct: 480 DLRAPLTSIMNGVMMLQRGIVGPVTEQQQELLKIAYQGSQTMLHLINTLLDISKMEQGRM 539

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
                   I        +    L ++   + E       P +    ++   +    +D  
Sbjct: 540 DLDLKPLPIFSVIDQAIERLQHLASSRGVTIEQRLAPYLPPVEIDGEKIVRVLQNLLDNA 599


>gi|332703410|ref|ZP_08423498.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332553559|gb|EGJ50603.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 696

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 87/435 (20%), Positives = 169/435 (38%), Gaps = 42/435 (9%)

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468
                      ++     ++    ++    +    +R +  +   L ++ + T D +++ 
Sbjct: 274 PVYQQNAGDEIQSLAEAFDVMAATLKDHIGELETARRGLARQEQLLHTVFDVTPDLVSLQ 333

Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528
           +   +    N+A  + F    E+++ +            +      +IL   +  + E  
Sbjct: 334 DERLVYRLVNKAFRRYFSLSGEEVVGRTDKDIFPSGQGVLSEDENRQILETGMPLSKEIY 393

Query: 529 TLGSTKEEKLLSLRIIIKKLPFSS---------CYSLTMHDISEWKQEKNKLSHAKKIAE 579
                +  +   +  +       +            LT  DIS  K+ + +L  ++K+ +
Sbjct: 394 VQ-RGENRRWFHVVKVPVYDGEPADSARPPRIIGLLLTARDISVIKRYQEQLIQSQKMED 452

Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639
                       V+HEI TPL  I+G+S+++         + R  E    I++   +   
Sbjct: 453 -----LGKLAGGVAHEINTPLGIILGYSQILLEDL---PKDSREREDVAVIEKQTQVCRK 504

Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA 699
           IV DLL  S+    +M   +  V L+E++ E ++LV+    ++R+ I     + +P I  
Sbjct: 505 IVADLLGFSR----QMESSWAEVDLNESIREVVALVRHIFQQERVFIEMQLDDGVPPIRG 560

Query: 700 DLRSVKQIALNILSNAIHFTPSGGQIIISTTH-TSNEEVILRVRDTGVGMTNYELEKAMK 758
           D   +KQ+ LN+LSNA     + G ++I T        V++ V DTG G++   + +   
Sbjct: 561 DKEKLKQVWLNLLSNAFDAIGADGTMVIRTKLCKHRRRVVVTVADTGKGISQDHMAQIFD 620

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS---------------TPAKGTL 803
           PF          G GTGLGL ++  ++  + GK    S                   GT+
Sbjct: 621 PFFTTKP----VGAGTGLGLSVSFGIIKDHKGKISAVSPAPVEYLGMGQEDGRPVGPGTV 676

Query: 804 IEIIFPLYDTSHPHD 818
             I  PL D   P D
Sbjct: 677 FIIELPLTDEGLPED 691


>gi|170760827|ref|YP_001788079.1| sensory box histidine kinase [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169407816|gb|ACA56227.1| sensory box histidine kinase [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 702

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 81/398 (20%), Positives = 158/398 (39%), Gaps = 17/398 (4%)

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILST 477
              ++  E +          D   ++   E     +  +++     +A+++  +      
Sbjct: 282 PIIDENNEILYTISSIKNVTDLIESQIISEERAEFIKYVVDCIELPLAVLDYPDLTYRLV 341

Query: 478 NRAVSKLFGYPVE-----DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ--TLEKITL 530
           N    +L           ++          +         L ++    +++     K  +
Sbjct: 342 NERYEELVERLHAKKIKGNLFGNTVENIFRKEEFKEQLEVLQKMKDGTIKEYTFSPKKFI 401

Query: 531 GSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
             + EE+   +R I  +        +   D++E  +   +L       EK +  K +F  
Sbjct: 402 LQSGEERFFKVRYIYHETKNKKRVHIHGSDVTEEFKSNLEL-------EKVNKLKDEFFT 454

Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650
            +SHE+RTPLT I    + +    +    N    +    I+++   +L ++N++LDISK 
Sbjct: 455 IISHELRTPLTIIYSSLQ-LAYDIYPEDINLNIDKILKRINQNTARLLKLINNILDISKA 513

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710
           E+G + L+ E   +       ++ +  YAN K I +          +  D    ++I LN
Sbjct: 514 EAGFLTLNNEYFDIVWETENIVNSITNYANSKNINLIFDTTKEEEEVWIDKDKYERILLN 573

Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           +LSNA+ FTP    I ++     N    L V+D G G+   +++     F Q+ +S    
Sbjct: 574 LLSNAVKFTPENKSIYVTLKIYKNNF-KLIVKDEGRGIPKEKIDCIFNRFAQVNSSLSRS 632

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            EGTG+GL L K +VD   G+  ++S    GT   +  
Sbjct: 633 AEGTGIGLSLVKKIVDLMDGEIKVYSILGNGTTFTVKI 670


>gi|330808999|ref|YP_004353461.1| histidine kinase, Hybrid [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327377107|gb|AEA68457.1| putative histidine kinase, Hybrid [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 1239

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 114/645 (17%), Positives = 208/645 (32%), Gaps = 34/645 (5%)

Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS--SLTEYYAHK 250
             A           L  I    +  E    +I S       LR   ++   ++ +     
Sbjct: 138 REATILVEQGIADGLKGIDARAAEHEARVSNIESAHRILDILRDGERIIIVNVAKMLVSG 197

Query: 251 DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310
           D    T       +    + +  +       + T  Q    +   SK   E+L       
Sbjct: 198 DGAAVTAARNACAALPPVVEQLRELMEAPQERETLDQLATAVAAVSKAV-EHLGETPKLR 256

Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
                        + V++  +             N          +   +          
Sbjct: 257 GDEALRH-LAAVEDLVERLDVMLGEVDEHVSRDENDIQAATGLLHNAAALSKRFAERVAT 315

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
              +           +  S    +   +RL  +       L     P   ++Q       
Sbjct: 316 LEAQTLSFRLSPSAEVAGSVGEILDELSRLARV-LPSSVGLQAKATPLTVSDQIAGYRAA 374

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSIL------EATSDGIAIINREGIILSTNRAVSKL 484
                +  +     R       +   +L      +A SD +   +R G++ +       +
Sbjct: 375 FARFNQASNALSGARDQVRNEARSAGLLVARFAGQARSDALIHNDR-GMLATIVAGTVAI 433

Query: 485 F-----GYPVEDILRKPFTVFLEQNTPSVMNHY---LTEILSLDLRQTLEKITLGSTKEE 536
                  +     + +P                   +      D    + +      +  
Sbjct: 434 LLAGAIAWSTSRFIAQPIVALASVMRRLAAGDLNAKIASAERGDEIGIMTRAVRVFQENA 493

Query: 537 KLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN-----------KLSHAKKIAEKESSHK 585
             + +     +       +     ++E     +           +L  A+  AE  +  K
Sbjct: 494 LRIRVLEAEAEAERQQVQASLERMVAERTDALHHQTEVLEAQAIELIQARNQAETANQAK 553

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
           SDF+A VSHE+RTPLT I+   E +      P          +   R+   +++ VND+L
Sbjct: 554 SDFVATVSHELRTPLTLILAPLEQLSAATTPPADWHVQ---VDRAQRNALRLMNRVNDIL 610

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
           D SK E+GK  L   PV L++ V        + A  K   +  S    +  +  D R  +
Sbjct: 611 DFSKAEAGKFELCPMPVDLNKTVGVLAEDAAMVAEGKGCTLTCSIDPALGTVFLDPRHFE 670

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           +I LN++SNAI FTP+GG + ++ T    E     V+D+G+G+   +L    + F QI N
Sbjct: 671 KILLNLVSNAIKFTPAGGTVHLTVTALDGERFEFAVQDSGIGIAPDKLPLLFQRFSQIDN 730

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           S      GTG+GL L K +V+   G+  + S P +G+   +  PL
Sbjct: 731 SATRHYSGTGIGLALVKDLVELMGGEVGVNSEPGQGSCFFVRLPL 775



 Score =  104 bits (259), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 74/222 (33%), Gaps = 27/222 (12%)

Query: 606  FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK-------IESGKMNLH 658
             S+ +     G +     ++ A  + +       I+ +L  ++K       I + + +  
Sbjct: 1021 LSDFLTKDHKGKMLPDYLLKLAKVVAQE---QQGIIEELGQLTKGIDHIKTIVAAQQSYA 1077

Query: 659  F-----EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713
                  E V + E + +A+ +       + + +    A ++P +  D   +  I +N+++
Sbjct: 1078 VAVSIVETVPVAELIDDALRMSAGLLARQEVTVVKDIA-DLPLLPLDRHRMLLILVNLIN 1136

Query: 714  NAIHF----TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
            NA             +  S +      + + V D G G+    L +              
Sbjct: 1137 NAKQALDGVIDRSRCVTFSASLADGAVLRITVADNGNGIAPEHLARIF-----SHGFTTR 1191

Query: 770  RGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFPL 810
            + +G G GL           G   + S    +G    +  PL
Sbjct: 1192 K-DGHGFGLHSCALAAQEMGGSLTVRSDGAGQGATFILDIPL 1232


>gi|299131770|ref|ZP_07024965.1| multi-sensor hybrid histidine kinase [Afipia sp. 1NLS2]
 gi|298591907|gb|EFI52107.1| multi-sensor hybrid histidine kinase [Afipia sp. 1NLS2]
          Length = 845

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 119/686 (17%), Positives = 234/686 (34%), Gaps = 47/686 (6%)

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFR-GFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK- 211
           G +   P  L  + + +    F+ F    GIV       +   +    D  F  L     
Sbjct: 46  GRSHAQPFILGLISLLAMVGLFTLFAFAAGIVRFADRGAENPLMKPMADNAFDGLAVTDA 105

Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271
           +GH       Y   +  +    +R   +V       +     L          +E     
Sbjct: 106 RGHIVYYNNAYLALTGAANVQEVRPVERVFIGNPDVSEAVFRLLKAAKEGKRQQEEVRVT 165

Query: 272 QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI 331
             +     L    +       ++           R+       F E ++   E +D  P 
Sbjct: 166 DAERGARWLRMRVQPLGHSRRESRYAVWSVADITRDRERQEDVFQELQHAI-EYLDHAPC 224

Query: 332 PFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390
            FF V   G+L Y N +      Y   +       L+ +L     +   +I P       
Sbjct: 225 GFFSVTPGGDLAYVNATLSNWLDYDLAEIGSGGLRLTDILSGDGAALLTSITPEPGEVKT 284

Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450
                   R+ + +        +       A+  P       I     +    +R  E+ 
Sbjct: 285 -EVFDVDLRMRSGKTMPAR---LYHKLAFGADGVPGASRTLVINRARDEHADPQRAAEVR 340

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLF-GYPVEDILRKPFTVFLEQNTPSVM 509
            M+     + T   IA ++R+G I+  N   +KL  G   +    K     + +     +
Sbjct: 341 FMRF---FDHTPMAIATVDRDGQIVRANARFAKLTQGLSAQASANKSIFAVVHERDRGEV 397

Query: 510 NHYL-TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568
              L            +E +  G         +  +      +    + + + +E +Q +
Sbjct: 398 TAILGRATEGQGDIPPVEAMLDGDKDRWGQFFVTSVEHDERDAEVAIVYLLETTEKRQLE 457

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
           N+ + ++K+              ++H+    L+AI+  ++ + N       +P + +   
Sbjct: 458 NQFAQSQKM-----QAVGQLAGGIAHDFNNVLSAIMMANDFLLNAH--KPTDPSFQDIMQ 510

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I ++      +V  LL  S+    +  L  + + L +A+S+   L++    EK + +  
Sbjct: 511 -IKQNATRAATLVRQLLAFSR----RQTLRPQVLDLGDALSDLTMLLKRLIGEK-VKLDV 564

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT--------------HTSN 734
               ++  +  D+   +Q+ +N+  NA    P GG++ + T+                + 
Sbjct: 565 VHGRDLWPVKVDVSQFEQVIVNLAVNARDAMPEGGKLAVKTSNVSAQDVARLQAKGMPAA 624

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
           + V + V DTG GMT   ++K  +PF     S +  G+GTGLGL     +V    G  Y+
Sbjct: 625 DYVRIEVSDTGTGMTAEIVDKIFEPFF----STKEVGKGTGLGLSTVYGIVKQTGGFIYV 680

Query: 795 FSTPAKGTLIEIIFP---LYDTSHPH 817
            STP +GT+  I  P   +   + P 
Sbjct: 681 DSTPGQGTMFSIYLPRHIVEKDAEPQ 706



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/379 (11%), Positives = 98/379 (25%), Gaps = 22/379 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL--KRQNTWYGK 146
            DA G++   +       G  A  +  +R  +   I + D +  +  LL   ++     +
Sbjct: 103 TDARGHIVYYNNAYLALTG--AANVQEVRPVERVFIGNPDVSEAVFRLLKAAKEGKRQQE 160

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                 +       + +   P+   +R  S +  + +  + R       + + L     +
Sbjct: 161 EVRV-TDAERGARWLRMRVQPL-GHSRRESRYAVWSVADITRDRERQEDVFQELQHAIEY 218

Query: 207 LHEIKKGHSSVEKEKYD-----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT--EKY 259
           L     G  SV             S         + +    LT+  +     L T     
Sbjct: 219 LDHAPCGFFSVTPGGDLAYVNATLSNWLDYDLAEIGSGGLRLTDILSGDGAALLTSITPE 278

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
           P     E    +        +      +           S   + +R     +      E
Sbjct: 279 PGEVKTEVFDVDLRMRSGKTMPARLYHKLAFGADGVPGASRTLVINRARDEHADPQRAAE 338

Query: 320 NLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
                  D  P+    V   G +  AN  F  LT+  S          + + +  +    
Sbjct: 339 VRFMRFFDHTPMAIATVDRDGQIVRANARFAKLTQGLSAQASANKSIFAVVHERDRGEVT 398

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
             +                A L     + +      F      +   +         E  
Sbjct: 399 AILG--RATEGQGDIPPVEAML-----DGDKDRWGQFFVTSVEHDERDAEVAIVYLLETT 451

Query: 439 DTRINKRKMEIEVMQLCSI 457
           + R  + +   +  ++ ++
Sbjct: 452 EKRQLENQF-AQSQKMQAV 469


>gi|94967723|ref|YP_589771.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus
           Koribacter versatilis Ellin345]
 gi|94549773|gb|ABF39697.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus
           Koribacter versatilis Ellin345]
          Length = 620

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 96/635 (15%), Positives = 208/635 (32%), Gaps = 45/635 (7%)

Query: 197 GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVS-SLTEYYAHKDD 252
            +    + + + +           +  I +                +  S+         
Sbjct: 10  PEESVVRLAAIVDSSDDAILGTDTQGTINTWNPAAEKMFGYSADEILGQSVLLLIPPSLH 69

Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
               E +  +   E     +         +         +++               S  
Sbjct: 70  AEHAENFERIARGERIEHYETQRLQRGGGRIDVSFTLSGIRDREGRMLGAAMIARELSAK 129

Query: 313 AYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
              +         V+           +G +   N +   L  YK+ D I         + 
Sbjct: 130 RRDEAVRARLAAIVESSDDAIIAKDLNGVVTDWNAAAERLFGYKAEDIIG------RSIL 183

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
           A    +    +PV+L +            H +  +    L ++       +     +  +
Sbjct: 184 AIIPPELQHEEPVILSKIRAGHRMEHYETHRLHKSGRR-LEVSVTISPIRDSSGRVIGAS 242

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
               +  + R     ++     L +I+E++ D I   N +G+I S N A  +LFGY  E+
Sbjct: 243 KFARDISEKRR----LQTVRSILAAIVESSDDAIVSKNLDGVITSWNAAAERLFGYTAEE 298

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
           I+ +     + +         +T + + +  +     T    K  + + + + +  +   
Sbjct: 299 IIGQSVLRIIPRELQHEEPGIITRLRAGE--RIDHYETRRRKKNGESIDVSLTVSPIRDE 356

Query: 552 SCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
               +     + DIS+ K  +  +   ++ A           A ++HE+  PL AI   S
Sbjct: 357 RGTVIGGSKILRDISDRKIAEAAIIEKERFA-----AAGRLAATLAHEVNNPLEAITNLS 411

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
             + +   G   +      A  + +      +I    L   +    K+ L    VSL E 
Sbjct: 412 -YLLSIHEG--LDSEAANLAALLLKEVQRAGEITRQTLVYYR--ESKVPL---LVSLREV 463

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727
           V+  +   +     K + + ++       +      ++Q+  N+L NA+   P GG + I
Sbjct: 464 VASVLRAKRSKLELKNVHVDSALPEPF-FVEGYPGELRQVLENLLDNALDAVPDGGHLQI 522

Query: 728 ---STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
               +   +NE V+L + D G G+      K  +PF         + +G+GLGL +++++
Sbjct: 523 QGSRSVSAANERVLLSICDNGPGIPAELAGKIFEPFFTTK-----KEKGSGLGLWVSQSI 577

Query: 785 VDANMGKFYIFS-TPAKGTLIEIIFPLYDTSHPHD 818
           V  + G   + S    + T+  +  P      P D
Sbjct: 578 VKKHQGTIEVRSNQENRETVFTLNLPAARLPEPAD 612



 Score =  110 bits (275), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 40/371 (10%), Positives = 101/371 (27%), Gaps = 16/371 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI-LHIDPNNHIGDLLKRQNTWYGKT 147
            D  G +   +    K  G  A +++G  +  +    LH +   +   + + +   + +T
Sbjct: 31  TDTQGTINTWNPAAEKMFGYSADEILGQSVLLLIPPSLHAEHAENFERIARGERIEHYET 90

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                 G  + V   L+   I  R     G     I           A+  RL       
Sbjct: 91  QRLQRGGGRIDVSFTLSG--IRDREGRMLGAA--MIARELSAKRRDEAVRARLAAIVESS 146

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS-SLTEYYAHKDDVLKTEKYPLLTSEE 266
            +       +     D  +        + ++ +  S+      +    +      + +  
Sbjct: 147 DDAIIA-KDLNGVVTDWNAAAERLFGYKAEDIIGRSILAIIPPELQHEEPVILSKIRAGH 205

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
                +      +  +         ++++S             S         ++    V
Sbjct: 206 RMEHYETHRLHKSGRRLEVSVTISPIRDSSGRVIGASKFARDISEKRRLQTVRSILAAIV 265

Query: 327 DKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
           +            G +   N +   L  Y + + I      S L   P+   +     + 
Sbjct: 266 ESSDDAIVSKNLDGVITSWNAAAERLFGYTAEEIIGQ----SVLRIIPRELQHEEPGIIT 321

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
             R+         R    +     S+ ++       ++    +  + I  +  D +I + 
Sbjct: 322 RLRAGERIDHYETRR---RKKNGESIDVSLTVSPIRDERGTVIGGSKILRDISDRKIAEA 378

Query: 446 KMEIEVMQLCS 456
            + IE  +  +
Sbjct: 379 AI-IEKERFAA 388



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/389 (10%), Positives = 98/389 (25%), Gaps = 39/389 (10%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ-NTWYGKTT 148
           D +G + + +    +  G  A  +IG  +  +           I   ++      + +T 
Sbjct: 154 DLNGVVTDWNAAAERLFGYKAEDIIGRSILAIIPPELQHEEPVILSKIRAGHRMEHYETH 213

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                G  L V + ++  PI   +    G   F                + +    + + 
Sbjct: 214 RLHKSGRRLEVSVTIS--PIRDSSGRVIGASKFA--RDISEK----RRLQTVRSILAAIV 265

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHL--RMKNKVSSLTEYYAHKDDVLKTEK--YPLLTS 264
           E        +     I S  +    L      ++   +       ++   E      L +
Sbjct: 266 ESSDDAIVSKNLDGVITSWNAAAERLFGYTAEEIIGQSVLRIIPRELQHEEPGIITRLRA 325

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
            E     +      N            +++               S     +        
Sbjct: 326 GERIDHYETRRRKKNGESIDVSLTVSPIRDERGTVIGGSKILRDISDRKIAEA------- 378

Query: 325 TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
                     +        A         ++  + +E    LS LL   +  D+ A    
Sbjct: 379 ---------AIIEKERFAAAGR-LAATLAHEVNNPLEAITNLSYLLSIHEGLDSEAANLA 428

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
            L   +        R   + +       +  +    A+       +  ++   VD+ + +
Sbjct: 429 ALLLKEVQRAGEITRQTLVYYRESKVPLLVSLREVVASVLRAKRSKLELKNVHVDSALPE 488

Query: 445 --------RKMEI-EVMQLCSILEATSDG 464
                    ++       L + L+A  DG
Sbjct: 489 PFFVEGYPGELRQVLENLLDNALDAVPDG 517


>gi|313681453|ref|YP_004059191.1| integral membrane sensor hybrid histidine kinase [Sulfuricurvum
           kujiense DSM 16994]
 gi|313154313|gb|ADR32991.1| integral membrane sensor hybrid histidine kinase [Sulfuricurvum
           kujiense DSM 16994]
          Length = 1088

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 73/251 (29%), Positives = 129/251 (51%), Gaps = 10/251 (3%)

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            ++   +  + K+ A + S  KS FLA +SHEIRTPL  I+GF+E++K+       +   
Sbjct: 382 LERIIEQTLNDKQYAMEASEAKSMFLANMSHEIRTPLNGIVGFTELLKDTEL----HDEQ 437

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            E+ + I++S   +L+I+N++LD+SKIES K+ +     +  +    A+ +  + A+EK 
Sbjct: 438 REFIDIIEKSSENLLEIINNILDLSKIESNKLEIEEIVFNPIDEFESAVEVYGVRASEKH 497

Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS-----NEEV 737
           I +      ++   +  D   +K++ +N+LSNA+ FT SGG I +              +
Sbjct: 498 IDLACYVDPSLERPLKGDPTKIKEVIINLLSNAVKFTNSGGAISVDIRRIECEILNRTRI 557

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
             +V+D G+G+T+ +  +  + F Q   S   +  GTGLGL ++   V+    K  + S 
Sbjct: 558 RFQVKDNGIGVTSEQRSRIFEAFSQADTSITRKYGGTGLGLTISSRFVELMGSKLDLESE 617

Query: 798 PAKGTLIEIIF 808
           P  GT      
Sbjct: 618 PGNGTSFFFTL 628


>gi|295677129|ref|YP_003605653.1| multi-sensor signal transduction histidine kinase [Burkholderia sp.
           CCGE1002]
 gi|295436972|gb|ADG16142.1| multi-sensor signal transduction histidine kinase [Burkholderia sp.
           CCGE1002]
          Length = 437

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 74/409 (18%), Positives = 164/409 (40%), Gaps = 35/409 (8%)

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK-----RKMEIEVMQLCSILEATSDGI 465
                +      + P      G     +     +     R++E +  +    ++A+ +G+
Sbjct: 52  RLWRLLDAPVYGEVPSAPGIWGEIYYRLHKLAKRWHAQVRQVEQQHSRFIQAIQASPNGV 111

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
           A+++    I   N      FG   +  LR+  T  +          ++  + S    + L
Sbjct: 112 AMLDDHDQIEWCNAISESHFGLDAKRDLRQHITHLVRHP------DFVRYLNSHRYEEML 165

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
               +    +++   L + +      +   +   DI+E ++                + +
Sbjct: 166 ---IMRGMGDKRQNVLSVQVFPYGD-NRKLVLSQDITELERT--------------DAMR 207

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
            DF+A VSHE++TPLT + GF E ++     PLG      Y + +++  + +  IV+DLL
Sbjct: 208 RDFVANVSHELKTPLTVLSGFLETMRE---LPLGEAERARYLDLMEQQASRMRHIVSDLL 264

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
            ++ +E        + + +   +       Q  +++    I       +  +      + 
Sbjct: 265 VLATLEGDNKPPSDQMIDMQAVLRHLHDDAQSLSSDHH-KIVFEADEAL-TVTGVETEIL 322

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
               N+++NAI +TP GG I ++         +  V D+G+G+   ++ +  + F ++  
Sbjct: 323 SAFGNLVTNAIRYTPDGGSIKVNWRAQ-GGHAVFSVTDSGLGIPAADIPRLTERFYRVDR 381

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           S+     GTGLGL + K ++  +  +  + S   +G+   + FP+Y T+
Sbjct: 382 SRSRDTGGTGLGLAIVKHVLQRHDAQLEVKSEEGRGSTFTVRFPVYRTA 430


>gi|258623635|ref|ZP_05718626.1| histidine protein kinase PhoR [Vibrio mimicus VM573]
 gi|258626941|ref|ZP_05721743.1| histidine protein kinase PhoR [Vibrio mimicus VM603]
 gi|262165036|ref|ZP_06032773.1| phosphate regulon sensor protein phoR [Vibrio mimicus VM223]
 gi|262172205|ref|ZP_06039883.1| phosphate regulon sensor protein phoR [Vibrio mimicus MB-451]
 gi|258580765|gb|EEW05712.1| histidine protein kinase PhoR [Vibrio mimicus VM603]
 gi|258584086|gb|EEW08844.1| histidine protein kinase PhoR [Vibrio mimicus VM573]
 gi|261893281|gb|EEY39267.1| phosphate regulon sensor protein phoR [Vibrio mimicus MB-451]
 gi|262024752|gb|EEY43420.1| phosphate regulon sensor protein phoR [Vibrio mimicus VM223]
          Length = 433

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 75/402 (18%), Positives = 153/402 (38%), Gaps = 30/402 (7%)

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDT-RINKRKMEIEVMQLCSILEATSDGIAI 467
           ++           +                   R  ++++   + +  +  E+  D + +
Sbjct: 54  SAWLWDEKRLTPPSGTGNWESLFNGIYRLQQRHRKKRKELTNLIRRFRNGAESLPDAVVV 113

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
              EG I+  NR    L G+   D   +P +  L          ++  +   D    LE 
Sbjct: 114 FRSEGNIVWCNRLAQHLLGFRWPDDAGQPISNLLRTP------DFIKYLKKDDFTDPLEM 167

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
                +       L + I        + + + D+++ KQ +                + +
Sbjct: 168 ----RSPLNSDRMLELRIVPYTEGE-HLMVVRDVTQLKQLEG--------------MRRN 208

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           F A VSHE+RTP+T + G+ E+   +    L  P + +    +    N +  +VN LL +
Sbjct: 209 FFANVSHELRTPMTVLQGYLEM--TEDPDVLAGPMWSKAHGVMTEQLNRMNSLVNQLLTL 266

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707
           SKIE+  M    + V +   +          + + +  +      ++ ++LAD   ++  
Sbjct: 267 SKIEASPMVDLDQVVDVPAMLEVLEKEALSLSGDAQHKLHFEVDKSL-KVLADEDQLRSA 325

Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
             N++ NA+ +TP+G QI +    +S     L V D G G+    L +  + F ++  ++
Sbjct: 326 ISNLVYNAVKYTPAGAQIDVRWYRSSKG-ACLEVEDKGEGIEPQHLHRLTERFYRVDKAR 384

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
                G+GLGL + K  +  +     I+S    G+    + P
Sbjct: 385 SRDTGGSGLGLAIVKHALAHHDTHLDIYSKVGVGSKFSFVLP 426


>gi|146341889|ref|YP_001206937.1| two-component sensor histidine kinase [Bradyrhizobium sp. ORS278]
 gi|146194695|emb|CAL78720.1| Putative two-component sensor histidine kinase with multiple PAS
           domains and a CheY-like response regulator receiver
           domain [Bradyrhizobium sp. ORS278]
          Length = 843

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 112/651 (17%), Positives = 215/651 (33%), Gaps = 48/651 (7%)

Query: 182 GIVHVNRVDNDPRALGKRLDKKFSHLHEIK-KGHSSVEKEKYDIFSQQSPPPHLRMKNKV 240
           GIV       D   +G   D  F  L     +GH       Y   +  +     R   +V
Sbjct: 63  GIVRFADKAADDPVMGAIADHAFDGLAVTDPRGHVVYANAAYLSMTGAASAQEARPVERV 122

Query: 241 -SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
                +       +LK  +      EE  +   E      L    +              
Sbjct: 123 FIGNPDVSEAVFRLLKAAREGKRQQEEVRITASEGGQGRWLRMRVRPLGQTKRYQRYAVW 182

Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVD 358
                 R+       F E ++   E +D  P  FF V   G L Y N +      Y   +
Sbjct: 183 SIADITRDRERQEDVFQELQHAI-EYLDHAPCGFFSVNPEGGLVYVNATLANWLDYDLAE 241

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA-MTFIP 417
                 G   L  A  +S + A     +             +       +   A +    
Sbjct: 242 I-----GSGGLKLADVVSGDGASLLTSIVAVPGEVRTEVFDIDLKMRGGKTMPARLYHKL 296

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
              A+  P       I     +    +R  E+  M+     + T   IA ++R G ++  
Sbjct: 297 AFGADGKPGASRTLVISRARDERSDPERAAEVRFMRF---FDHTPMAIATVDRGGAVVRA 353

Query: 478 NRAVSKLFG-YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
           N   +KL      +    K     + Q    ++   + +              +     E
Sbjct: 354 NARYAKLAQSVSGDVAAAKSIFRAVSQRDRHLLIAAINQAAE-GQADIPPVEVMLEGARE 412

Query: 537 KLLSLRIIIKKL--PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
           +     +         +    + + + +E +  +N+++ ++K+              ++H
Sbjct: 413 RFGQFFVTAVDEDERETEAAIVYLLETTERRALENQINQSQKM-----EMVGQLAGGIAH 467

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           +    L+AI+  ++ + N       +P + +    I ++      +V  LL  S+    +
Sbjct: 468 DFNNVLSAIMMANDFLLNAH--KPTDPSFQDIMQ-IKQNATRAATLVRQLLAFSR----R 520

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714
             L  + + L +A+S+   L++    EK + +  S   ++  +  D+   +Q+ +N+  N
Sbjct: 521 QTLRPQVLDLGDALSDLTMLLRRLIGEK-VKLDLSHGRDLWPVKVDVSQFEQVIVNLAVN 579

Query: 715 AIHFTPSGGQIIISTT--------------HTSNEEVILRVRDTGVGMTNYELEKAMKPF 760
           A    P GG++ + T                   + V + + DTG G+     EK  +PF
Sbjct: 580 ARDAMPDGGKLSVRTANVTAEETAQAAYKGMPVADYVKIEISDTGTGIPAEIREKIFEPF 639

Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
                S +  G+GTGLGL     ++    G  Y+ S   KGT  +I  P +
Sbjct: 640 F----STKEVGKGTGLGLSTVYGIIKQTGGFIYVDSEVGKGTAFQIFLPRH 686



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/373 (11%), Positives = 90/373 (24%), Gaps = 20/373 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL--KRQNTWYGK 146
            D  G++   +       G  A      R  +   I + D +  +  LL   R+     +
Sbjct: 91  TDPRGHVVYANAAYLSMTG--AASAQEARPVERVFIGNPDVSEAVFRLLKAAREGKRQQE 148

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                         + +   P+  + + +  +  + I  + R       + + L     +
Sbjct: 149 EVRITASEGGQGRWLRMRVRPL-GQTKRYQRYAVWSIADITRDRERQEDVFQELQHAIEY 207

Query: 207 LHEIKKGHSSVEKEKYDI-----FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE--KY 259
           L     G  SV  E   +      +         + +    L +  +     L T     
Sbjct: 208 LDHAPCGFFSVNPEGGLVYVNATLANWLDYDLAEIGSGGLKLADVVSGDGASLLTSIVAV 267

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
           P     E    + +      +      +           S   +  R     S      E
Sbjct: 268 PGEVRTEVFDIDLKMRGGKTMPARLYHKLAFGADGKPGASRTLVISRARDERSDPERAAE 327

Query: 320 NLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
                  D  P+    V   G +  AN  +  L    +           ++  A    D 
Sbjct: 328 VRFMRFFDHTPMAIATVDRGGAVVRANARYAKL----AQSVSGDVAAAKSIFRAVSQRDR 383

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
           + +   +   ++     A      +           F          E         E  
Sbjct: 384 HLLIAAINQAAEGQ---ADIPPVEVMLEGARERFGQFFVTAVDEDERETEAAIVYLLETT 440

Query: 439 DTRINKRKMEIEV 451
           + R  + ++    
Sbjct: 441 ERRALENQINQSQ 453



 Score = 42.3 bits (98), Expect = 0.33,   Method: Composition-based stats.
 Identities = 36/403 (8%), Positives = 110/403 (27%), Gaps = 23/403 (5%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK 146
           ++++  G L  ++  L   +     + IG     ++D++  D  + +  ++        +
Sbjct: 216 FSVNPEGGLVYVNATLANWLDYDLAE-IGSGGLKLADVVSGDGASLLTSIVAVPGEVRTE 274

Query: 147 TTLWPIEGTNLYV-PIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
                ++       P  L     +  + +    R   I       +DP    +    +F 
Sbjct: 275 VFDIDLKMRGGKTMPARLYHKLAFGADGKPGASRTLVISRARDERSDPERAAEVRFMRFF 334

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA--HKDDVLKTEKYPLLT 263
               +               ++ +        +  ++ + + A   +D  L         
Sbjct: 335 DHTPMAIATVDRGGAVVRANARYAKLAQSVSGDVAAAKSIFRAVSQRDRHLLIAAINQAA 394

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
             ++ +P  E        +   + +   +  + +E+   + +    +     +   N + 
Sbjct: 395 EGQADIPPVEVMLE-GARERFGQFFVTAVDEDERETEAAIVYLLETTERRALENQINQSQ 453

Query: 324 --ETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
             E V +                N     +        +                  NA 
Sbjct: 454 KMEMVGQLAGGIAHD-------FNNVLSAIMMANDF-LLNAHKPTDPSFQDIMQIKQNAT 505

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
           +   L R      +    L     +  ++L+       +     +         +    +
Sbjct: 506 RAATLVRQL-LAFSRRQTLRPQVLDLGDALS-DLTMLLRRLIGEKVKLDLSHGRDLWPVK 563

Query: 442 INKRKMEIEVMQLC-SILEATSDGIAIINREGIILSTNRAVSK 483
           ++  + E  ++ L  +  +A  DG      +  + + N    +
Sbjct: 564 VDVSQFEQVIVNLAVNARDAMPDG-----GKLSVRTANVTAEE 601


>gi|115391625|ref|XP_001213317.1| hypothetical protein ATEG_04139 [Aspergillus terreus NIH2624]
 gi|114194241|gb|EAU35941.1| hypothetical protein ATEG_04139 [Aspergillus terreus NIH2624]
          Length = 2330

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 76/250 (30%), Positives = 126/250 (50%), Gaps = 10/250 (4%)

Query: 565  KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
            K  + +  H  K+ E  +  KS FLA +SH++RTP+  +IG SE++K  +     N    
Sbjct: 1863 KVAEAEAKHNVKLKEDAAKAKSIFLANISHDLRTPMNGVIGLSELLKGTKL----NREQD 1918

Query: 625  EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
            EY   I    + +L ++ND+LD SK+E+GKM +   P+++ E +SE +  ++    ++ +
Sbjct: 1919 EYVESIRVCADTLLTLINDILDFSKLEAGKMKISTVPLNIKETISEVVRALRYTHRDRGL 1978

Query: 685  LIRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILR- 740
                      P   +  D   + QI +N+LSN+  FTP G   +    T      V L  
Sbjct: 1979 ETIEDLDKVPPDLVVFGDPVRLHQIFMNLLSNSYKFTPKGSVTVAARVTREGKGRVRLEC 2038

Query: 741  -VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA-NMGKFYIFSTP 798
             V DTG+G+   +  +  +PF Q  +S      G+GLGL + KA+++    G  ++ STP
Sbjct: 2039 AVTDTGIGIPEEQKSRLFRPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGAIWLDSTP 2098

Query: 799  AKGTLIEIIF 808
             KGT +    
Sbjct: 2099 GKGTTVTFHL 2108


>gi|6435833|gb|AAF08344.2|AF083422_1 tyrosine kinase DivL [Caulobacter crescentus CB15]
          Length = 769

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 102/653 (15%), Positives = 217/653 (33%), Gaps = 37/653 (5%)

Query: 175 FSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL 234
             G     +  +     D    G     +F+   +       +           +    +
Sbjct: 134 VEGRAAGALAWLRLAPIDRADSGLPTAARFAAFVDSVVEPCWIAGADGQAIWGNAAF--V 191

Query: 235 RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294
           R     S+     A K      +   +  + +    E   +  +   +   +     L  
Sbjct: 192 RAVGAASAHAPALAGKSFDRGADAEVVEAAGKGERREALRWINVEGRRRAFRLSAQPLDG 251

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTK 353
                F          +   F +      ET++       ++S    L Y N +F  L  
Sbjct: 252 GGVGVFCADVTEI-EDVRDAFKKHVEAHDETLNHIAEAVAIFSQTRRLSYHNTAFAELWG 310

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
            +    +        +LD  +                       A L   +     +  +
Sbjct: 311 LEP-AWLADRPTHGEVLDRLRQRRRLPETIDYAGWKA-------AELARYEDLGPQADDL 362

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL----CSILEATSDGIAIIN 469
             +P  +  +        G           + +++ +   L     + L+  +D +A+  
Sbjct: 363 WDLPDGRTLKVVRQPHPLGGMLLIYSDITGELRLKAQYNALIQVQQATLDKLNDAVAVFG 422

Query: 470 REGIILSTNRAVSKLFGYPVEDILRK-PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528
            +G +   N A    +      +     F   +E   P + +      L   +     ++
Sbjct: 423 SDGRLRLHNEAFETFWNVTPHALEAAGDFEGVVELCVPRLHDLSFWRELKGRVADPDPQM 482

Query: 529 T-----LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
                    T + +++  +             +   D+++ +  ++ L+       +   
Sbjct: 483 RAPTSGEVRTSDSRIVLYQSRPLP---DGATLIAFADVTDTRDLQSALADRSAALAEAER 539

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
            K DF+  VS+E+RTPLT IIG+SE+++        + R   +   +  +   +   ++D
Sbjct: 540 LKRDFVGNVSYELRTPLTTIIGYSELLER---ADGISERGRNHVAAVRAAATQLARSIDD 596

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703
           +LD+++I++G+M L  E + + + +  A       A    + +      ++  I  D + 
Sbjct: 597 VLDMAQIDAGEMALEIEDIRVSDLLLNAQERALKDAQLGGVTLAVECEEDVGLIRGDGKR 656

Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
           + Q   +++ NA+  TP GG++ +S    +  EV L V DTG G+  +        F   
Sbjct: 657 LAQTLDHLVENALRQTPPGGRVTLS-ARRALGEVRLDVSDTGRGVPFHVQAHIFDRFV-- 713

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
                    G GLGL L KA+V+ + G   + S P  G+      P  +T  P
Sbjct: 714 ----GRDRGGPGLGLALVKALVELHGGWVALESEPGNGSTFTCHLP--ETQQP 760


>gi|332712423|ref|ZP_08432350.1| PAS domain S-box protein [Lyngbya majuscula 3L]
 gi|332348897|gb|EGJ28510.1| PAS domain S-box protein [Lyngbya majuscula 3L]
          Length = 518

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 85/401 (21%), Positives = 168/401 (41%), Gaps = 30/401 (7%)

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
                ++    ++ +     Q  S++E+  +    I+  G  +  N A +   G+ VE+ 
Sbjct: 121 RVRRLIEANRAEKTLREREKQYRSVVESVKEVFFQIDATGHWIFLNSAWTTFTGFTVEES 180

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
           L K    F++ +           +++ +     +      TK  K     I I       
Sbjct: 181 LGKNCLKFIDPDDQERYQQLWQSLVNGEKDS-FKHEIRYVTKTGKCRWGEINIHSSLMID 239

Query: 553 CYSLTMH------------------------DISEWKQEKNKLSHAKKIAEKESSHKSDF 588
                                          DI E ++    +  + +  ++ S  KS  
Sbjct: 240 GVVTGFSGMLQDTTELRKAQALEKEKIKLEADIQERERRSEIIRKSLEQEKELSELKSRV 299

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
           ++ +SHE RTP+  I   +E +  +    L   + +++   I  +   +  ++ +++ + 
Sbjct: 300 ISTISHEFRTPMMMIQSSTE-LLAKYSEKLSEDKRLKHFQQIGWAVEHMNQLLTNVIFLD 358

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIA 708
           K ESG+++ H E ++L++   + I+ +Q+  +     I  S  +N  ++  D + V QI 
Sbjct: 359 KTESGELDCHPEYLNLEKLCQKIINNLQVTLSS-DYKIDFSTQSNSSQVNLDEQLVGQIL 417

Query: 709 LNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
            NILSNA+ ++P GG I          E IL +RD+G+G+ + E ++    F +   +  
Sbjct: 418 TNILSNAVKYSPQGGIIKFDVFCQPE-EAILTIRDSGIGIPSKEKQRVFDSFYRA--TNV 474

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
              +GTGLGL +AK  V+ + GK  + S    GT  ++I P
Sbjct: 475 GAIKGTGLGLAIAKKCVELHRGKINLDSEVGVGTKFQVILP 515



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/208 (12%), Positives = 62/208 (29%), Gaps = 12/208 (5%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ--NTWY 144
           + IDA G+   ++       G    + +G       D    +    +   L     +++ 
Sbjct: 154 FQIDATGHWIFLNSAWTTFTGFTVEESLGKNCLKFIDPDDQERYQQLWQSLVNGEKDSFK 213

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            +       G   +  I++ +  +       +GF G  ++         +AL K   K  
Sbjct: 214 HEIRYVTKTGKCRWGEINIHSSLMID--GVVTGFSG--MLQDTTELRKAQALEKEKIKLE 269

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
           + + E ++    + K                +K++V S   +      ++      LL  
Sbjct: 270 ADIQERERRSEIIRKSLEQEKELSE------LKSRVISTISHEFRTPMMMIQSSTELLAK 323

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTL 292
               L E +         +  +     L
Sbjct: 324 YSEKLSEDKRLKHFQQIGWAVEHMNQLL 351


>gi|209522685|ref|ZP_03271243.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
 gi|209496734|gb|EDZ97031.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
          Length = 1263

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 120/590 (20%), Positives = 224/590 (37%), Gaps = 73/590 (12%)

Query: 288  YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV--YSHGNLFYAN 345
               T Q   K      + R   +  A   E E          P P  +     G     N
Sbjct: 447  AERTQQLEQKVKIAEAAVRERKAAEAALRESEQKFSTAFHAAPHPITISRLDDGIHLEVN 506

Query: 346  PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405
             SF L+T Y + + I        L    +             +     +    +   I+ 
Sbjct: 507  ESFCLVTGYNAEEIINRTLDELNLWVYSEQRSEMLDLIAQNRQVRNFELEFRTKNGEIRS 566

Query: 406  NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV-MQLCS------IL 458
               ++  +     E       ++       E +  +  + ++  ++  +L S      I 
Sbjct: 567  GLVSADIINLNSQECLLSSSNDITDRRRAEEALRRQFERERLLRQITEELRSSLDPQQIF 626

Query: 459  EATSDGI---AIINREGIILSTN------RAVSKLFGYPVEDILRKPFTVFLEQ------ 503
            +  ++ I     ++R  I    +      +AV++        IL + + +          
Sbjct: 627  QTAANRIGQTFGVDRCTIYTYLSSPTPQIKAVAEYLKCEYPPILNQEYPLEDYPYIDRIL 686

Query: 504  -----------NTPSVMNHYLTEILSLDLRQTLEKITLGST-KEEKLLSLRIIIKKLPFS 551
                       NT   +   L      +++  L   T   +     +   +    +    
Sbjct: 687  SQDIAITHENINTDKNLQGALEFCQQFEIQSLLAIRTSYRSQPNGAIYLSQCSNSRTWTD 746

Query: 552  S------------CYSLTMHDISEWKQEKN--------KLSHAKKIAEKESSHKSDFLAR 591
                           +L   ++ E ++++          L  A++ A+  +  KS FLA 
Sbjct: 747  EEIDLLESVAAKMGIALAQANLLEREKQQRLKLATQNIALEEARRAADAANRAKSTFLAN 806

Query: 592  VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
            +SHE+RTPL AI+GFS+++ +      G+         I+RSG  +L+++ND+LD+SKIE
Sbjct: 807  MSHELRTPLNAILGFSQLMSDNPIFAEGSQE----LAIINRSGEHLLELINDILDLSKIE 862

Query: 652  SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALN 710
            +GK+ L      L   +     + +L A  K I++  +   ++PR +L D + ++Q+ +N
Sbjct: 863  AGKITLEMNHFDLHRLLETLEEMFKLKAAHKDIVLNINRPLDLPRYLLGDEKKLRQVLIN 922

Query: 711  ILSNAIHFTPSGGQIIIST--------THTSNEEV--ILRVRDTGVGMTNYELEKAMKPF 760
            +L+NAI FT +G ++ + T         HT +  V     V DTG G++  E++     F
Sbjct: 923  LLANAIKFTTAG-EVTLYTKTLPTPKEAHTDSNTVLMQFIVEDTGPGISPQEIDALFDAF 981

Query: 761  GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             Q    +  + EGTGLGLP+++  V    G   + ST   G+      PL
Sbjct: 982  VQTETGKYSQ-EGTGLGLPISRKFVQLMGGDITVDSTMGVGSKFIFEIPL 1030



 Score = 42.3 bits (98), Expect = 0.36,   Method: Composition-based stats.
 Identities = 15/114 (13%), Positives = 39/114 (34%), Gaps = 4/114 (3%)

Query: 47  DSFEQSNFTDQNQESVSNTNYLDSENTF--VFDPIPRTVRFTWNIDAHGYLKEISEELPK 104
           +   +       +   +     +SE  F   F   P  +     +D  G   E++E    
Sbjct: 454 EQKVKIAEAAVRERKAAEAALRESEQKFSTAFHAAPHPIT-ISRLD-DGIHLEVNESFCL 511

Query: 105 TIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLY 158
             G  A ++I   L +++  ++ +  + + DL+ +          +  +   + 
Sbjct: 512 VTGYNAEEIINRTLDELNLWVYSEQRSEMLDLIAQNRQVRNFELEFRTKNGEIR 565


>gi|119486144|ref|ZP_01620204.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
 gi|119456635|gb|EAW37764.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
          Length = 1410

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 75/256 (29%), Positives = 128/256 (50%), Gaps = 26/256 (10%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E ++    L+  +  A   +  KS+FLA +SHEIRTP+ A+IG + ++ + R        
Sbjct: 653 ERQKTAQDLAKVRDEALAATKAKSEFLATMSHEIRTPMNAVIGMTGLLLDTRLTST---- 708

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             +Y   I  S + +L ++ND+LD SKIESGK+ L   P  L   + E++ L+   A  K
Sbjct: 709 QQDYVETIRSSSDALLSLINDILDFSKIESGKLELEQHPFDLRTCIEESLDLLATKAVSK 768

Query: 683 RILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII----------ISTTH 731
            I +        P +++ D   ++QI +N+LSNA+ FT +G  +I          +S  +
Sbjct: 769 NIELAYLIDPITPSKVIGDGARLRQILVNLLSNAVKFTETGEVVISLKAVSLEPIVSEEN 828

Query: 732 TSNE-----------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
                          ++   VRDTG+G+    + +  K F Q+ +S   +  GTGLGL +
Sbjct: 829 LDENSTETTTQPNRYQIQFAVRDTGIGIPPARMNRLFKSFSQVDSSTSRQYGGTGLGLVI 888

Query: 781 AKAMVDANMGKFYIFS 796
           +K + +   G+ ++ S
Sbjct: 889 SKRLAEMMGGQMWVES 904



 Score = 74.3 bits (181), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 73/220 (33%), Gaps = 14/220 (6%)

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
           ++ L     L        V+           + ++  I  + + SL ++ +  ++     
Sbjct: 289 IAVLFVGAILGG--ITLFVLERLVLSRLSDLNNQVSNISSSGDLSLQVSVLGEDELGNLA 346

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
           E + Q     ED D          +  +   + E ++D I   + +GIIL  + A   L 
Sbjct: 347 ETINQMLRALEDADHDR-----LQQEERYRLLAEHSTDMITRHSVDGIILYASPACRILL 401

Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
           GY  E+++      FL     + +      +L  ++  T+        K    +      
Sbjct: 402 GYEPEELINCTAAEFLHPRDLNALVKAHFFVLRQNVTYTI--TYRIRHKNGNYIWFETTS 459

Query: 546 KKLP-----FSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
             +       S        DIS+ KQ + +L  ++     
Sbjct: 460 SAIRTSENEDSQEIIGVSRDISDRKQREQQLQDSEASIRA 499



 Score = 46.2 bits (108), Expect = 0.022,   Method: Composition-based stats.
 Identities = 15/121 (12%), Positives = 33/121 (27%), Gaps = 2/121 (1%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151
            G +   S      +G    ++I     +      ++        + RQN  Y  T    
Sbjct: 387 DGIILYASPACRILLGYEPEELINCTAAEFLHPRDLNALVKAHFFVLRQNVTYTITYRIR 446

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
            +  N  +  +  +  I +   E       G+              +  +     L++I 
Sbjct: 447 HKNGNY-IWFETTSSAIRTSENE-DSQEIIGVSRDISDRKQREQQLQDSEASIRALYQIT 504

Query: 212 K 212
            
Sbjct: 505 S 505


>gi|154244584|ref|YP_001415542.1| PAS/PAC sensor hybrid histidine kinase [Xanthobacter autotrophicus
           Py2]
 gi|154158669|gb|ABS65885.1| PAS/PAC sensor hybrid histidine kinase [Xanthobacter autotrophicus
           Py2]
          Length = 695

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 88/522 (16%), Positives = 195/522 (37%), Gaps = 42/522 (8%)

Query: 321 LTPETVDKCP-IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
           L        P     + S G   +AN  F+        + I+           P + ++ 
Sbjct: 28  LFTALFQSIPGRAVLLDSSGVCRFANQEFMDFLGRSRDEVIDRPV---QDFLEPSVFESY 84

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
           A     ++  ++    A      +    +  L     P+   +     +   G+  +  D
Sbjct: 85  APLMERVFGGEQVRRVAWVDYGRL---GKRYLEEVISPYRV-DLTGPVVGCFGVGRDLTD 140

Query: 440 TRINKRKM-EIEVMQLCS------ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
            +  + ++      Q+ +      I+    DGI +++ EG ++  N A  ++FGY  E+ 
Sbjct: 141 MKHQEMEIVRRTQAQMEAEAYHAAIVGTALDGIVVVDEEGSVVDFNPAAEQIFGYRKEEA 200

Query: 493 LRKPFTVFL-EQNTPSVMNHYLTEILSLDLRQTLEK--ITLGSTKEEKLLSLRIIIKKLP 549
           L +     L      +     +   L+  + + + +         +   + + + I  + 
Sbjct: 201 LGRSIAELLVPPELRAAHAAGMRSYLATGITRLIGRRLELPALLADGTRIPIELAITDVT 260

Query: 550 FSSC--YSLTMHDISEWKQEKNKLSHAKKIAEKESS--HKSDFLARVSHEIRTPLTAIIG 605
                 ++  M D+   K+ + ++   +    ++         LA V+HE+  PL+ + G
Sbjct: 261 RGERRLFAAHMRDLRAAKRAEEEIKRQRNALHQKEKLAALGSLLAGVAHELNNPLSVVTG 320

Query: 606 FSEVIKNQRF--------GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
            + +++ Q          G     + I+  + I+ + +    IV   LD+++    +   
Sbjct: 321 QTMLLREQVLKEANVRSGGLPTLDKVIQRCDRIETATHRCARIVRSFLDMAR----QREA 376

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
                +L +   EA+ L+        + +    A  +PR++ D   + Q+ LN+L NA  
Sbjct: 377 ERRSTNLADVAREAVELLGYNMRASGVKVSLDIAPGLPRLMLDAGQIHQVLLNLLVNAQQ 436

Query: 718 FTPSGG---QIIISTTHT-SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
                    ++ +S         V++RV D G G+      +   PF         +G G
Sbjct: 437 ALEEKAGERRVAVSVAVDADRNAVLIRVADNGPGIAENIRSRIFDPFFTTKP----QGVG 492

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
           TG+GL +++ +++A+ G   + + P  G L  I  PL + + 
Sbjct: 493 TGIGLAVSRGLIEAHGGTLELGTGPDGGALFTIQLPLEEVAA 534



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/255 (7%), Positives = 57/255 (22%), Gaps = 19/255 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D+ G  +  ++E    +G    ++I   + D  +    +    + + +           
Sbjct: 43  LDSSGVCRFANQEFMDFLGRSRDEVIDRPVQDFLEPSVFESYAPLMERVFGGEQVRR--V 100

Query: 149 LWPIEGTNLYVPIDLAALPIY-SRNREFSGFRGFGIVHVNRVDNDPR-------ALGKRL 200
            W   G      ++    P          G   FG+                        
Sbjct: 101 AWVDYGRLGKRYLEEVISPYRVDLTGPVVGC--FGVGRDLTDMKHQEMEIVRRTQAQMEA 158

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLKTE 257
           +   + +         V  E+  +             R +  +           ++    
Sbjct: 159 EAYHAAIVGTALDGIVVVDEEGSVVDFNPAAEQIFGYRKEEALGRSIAELLVPPELRAAH 218

Query: 258 KYP----LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
                  L T     +  + +   +  +                E   + +H      + 
Sbjct: 219 AAGMRSYLATGITRLIGRRLELPALLADGTRIPIELAITDVTRGERRLFAAHMRDLRAAK 278

Query: 314 YFDEGENLTPETVDK 328
             +E        + +
Sbjct: 279 RAEEEIKRQRNALHQ 293



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/318 (11%), Positives = 86/318 (27%), Gaps = 20/318 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNT-WYG 145
           +D  G + + +    +  G    + +G  + ++     +   +   +   L    T   G
Sbjct: 176 VDEEGSVVDFNPAAEQIFGYRKEEALGRSIAELLVPPELRAAHAAGMRSYLATGITRLIG 235

Query: 146 KTTLWP-IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
           +    P +      +PI+LA   +    R          +   R         KR     
Sbjct: 236 RRLELPALLADGTRIPIELAITDVTRGERRLFAAH----MRDLRAAKRAEEEIKRQRNAL 291

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
               ++    S +    +++       P   +  +   L E    + +V       L   
Sbjct: 292 HQKEKLAALGSLLAGVAHELN-----NPLSVVTGQTMLLREQVLKEANVRSGGLPTLDKV 346

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
            +     +   H       +        +   + S               ++   +    
Sbjct: 347 IQRCDRIETATHRCARIVRSF-LDMARQREAERRSTNLADVAREAVELLGYNMRASGVKV 405

Query: 325 TVDKCP-IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
           ++D  P +P  +   G +       LL     +   +E   G    +      D +    
Sbjct: 406 SLDIAPGLPRLMLDAGQIHQV----LLNLLVNAQQALEEKAG-ERRVAVSVAVDADRNAV 460

Query: 384 VMLYRSDRTCIAASARLH 401
           ++    +   IA + R  
Sbjct: 461 LIRVADNGPGIAENIRSR 478



 Score = 43.9 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 18/149 (12%), Positives = 40/149 (26%), Gaps = 7/149 (4%)

Query: 310 SLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
             +    E E      V         V   G++   NP+   +  Y+  + +     ++ 
Sbjct: 150 RRTQAQMEAEAYHAAIVGTALDGIVVVDEEGSVVDFNPAAEQIFGYRKEEALGR--SIAE 207

Query: 369 LLDAPKLSDNNAIK-PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
           LL  P+L   +A      L       I     L  +  +      +            E 
Sbjct: 208 LLVPPELRAAHAAGMRSYLATGITRLIGRRLELPALLADGTR---IPIELAITDVTRGER 264

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
                   +    +  + +++ +   L  
Sbjct: 265 RLFAAHMRDLRAAKRAEEEIKRQRNALHQ 293


>gi|148256248|ref|YP_001240833.1| PAS/PAC sensor hybrid histidine kinase [Bradyrhizobium sp. BTAi1]
 gi|146408421|gb|ABQ36927.1| PAS/PAC sensor hybrid histidine kinase [Bradyrhizobium sp. BTAi1]
          Length = 822

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 100/678 (14%), Positives = 208/678 (30%), Gaps = 65/678 (9%)

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVE-----KEKYDIFSQQSPPPHLRMKNK 239
           H+  +  D     + L ++ + L  I++           +E +             +  +
Sbjct: 24  HIEEIARDRDQAYRALQEREAELARIQRIARVGGVEVDLREGFRNRRSPEYLIIHGLPEE 83

Query: 240 VSSLTEYYA----HKDDVLKTEK---YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL 292
            ++ T        H DD +K E+     + + +E    E       +      +      
Sbjct: 84  AANETHEDWVNRVHPDDRIKAEQDFIAAVNSKQEDYTTEYRIIRPSDGEIRWIRVIARIE 143

Query: 293 QN----NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLF-YANPS 347
           ++      +    ++   +     A   E E       D  P+P ++        + N +
Sbjct: 144 RDWNGRAIRLVGAHIDVTDQMLAQAKLRESEERFRLIADSAPVPIWLTRLDRTRSFVNRA 203

Query: 348 FLLLTKYKSVDDIE-------IAGGLSTLLDAPKLSDNNAI---KPVMLYRSDRTCIAAS 397
           ++        + +            L  +L   +  + +           R+D       
Sbjct: 204 YVDFLGLSHDEALAFDWRKALHPEDLPRILAQQQTGECSLKPFFLEARYRRADGHWRWLR 263

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR--KMEIEVMQLC 455
           +     +W+                   +   +     E ++ RI +R  ++E    ++ 
Sbjct: 264 SESQP-RWDANGQHIGFIGVAHDVTAAKQGEIELRRINETLEERIRERTAQLEANEARMR 322

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           +I + ++   AI++ EG I   NR           D++  P            ++  L +
Sbjct: 323 AIFDTSNQYQAILDTEGRITHVNRIAVDGMRAGGVDVIGHPLWDAPWFVHTPGVSEMLRK 382

Query: 516 ILSLDLRQT-LEKITLGSTKEE-KLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKL 571
             +  L                 +   L +        +         DI+E  Q +  L
Sbjct: 383 AFARVLAGDSFRTEVRLDFANGDRHFELSMRPLFDQHDAIMGAVAEAVDITERIQGEELL 442

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
             ++K+              V+H+    LT I   ++ ++ +    L   R   Y + I 
Sbjct: 443 RQSQKM-----EAVGQLTGGVAHDFNNLLTIIRSATDFLRRRD---LPEERRRRYVDAIS 494

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
            +      +   LL  ++    +  L  +  ++ E V   + L++      RI I  +  
Sbjct: 495 ETVERASKLTGQLLAFAR----RQPLTPQVFNVGEQVESVVQLIRPLV-GSRIQIELAVT 549

Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS------------NEEVIL 739
                 LAD+   +   +N+  NA       G++ IS   T                + +
Sbjct: 550 ETSLFTLADIAQFQTALINLAVNARDAMNGEGRLTISMRSTDTLPALRGQSARPGAFIAI 609

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V DTG G+    L    +PF          G+GTGLGL  A      + G   + S   
Sbjct: 610 SVADTGAGIAPQHLNAIFEPFFTTK----EVGKGTGLGLSQAFGFAKQSEGDIAVESRLG 665

Query: 800 KGTLIEIIFPLYDTSHPH 817
           +G    I  P    + P 
Sbjct: 666 QGATFTIYLP--QAAAPQ 681



 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 25/312 (8%), Positives = 76/312 (24%), Gaps = 6/312 (1%)

Query: 279 NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH 338
           N     + +    +   +               +    +        + +      V   
Sbjct: 2   NSADAPRDEVVPDIAGAAALRQHIEEIARDRDQAYRALQEREAELARIQRIARVGGVEVD 61

Query: 339 GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398
               + N           + +          ++     D    +   +   +      + 
Sbjct: 62  LREGFRNRRSPEYLIIHGLPEEAANETHEDWVNRVHPDDRIKAEQDFIAAVNSKQEDYTT 121

Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458
               I+ +      +  I   + +     +   G   +  D  + + K+     +   I 
Sbjct: 122 EYRIIRPSDGEIRWIRVIARIERDWNGRAIRLVGAHIDVTDQMLAQAKLRESEERFRLIA 181

Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
           ++    I +   +      NRA     G   ++ L   +   L       +     +   
Sbjct: 182 DSAPVPIWLTRLDRTRSFVNRAYVDFLGLSHDEALAFDWRKALHPEDLPRILA--QQQTG 239

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHA 574
               +           +     LR   +    ++     +    HD++  KQ + +L   
Sbjct: 240 ECSLKPFFLEARYRRADGHWRWLRSESQPRWDANGQHIGFIGVAHDVTAAKQGEIELRRI 299

Query: 575 KKIAEKESSHKS 586
            +  E+    ++
Sbjct: 300 NETLEERIRERT 311



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/366 (7%), Positives = 84/366 (22%), Gaps = 39/366 (10%)

Query: 56  DQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIG 115
           D   + ++     +SE  F        V   W          ++      +G    + + 
Sbjct: 159 DVTDQMLAQAKLRESEERFRLIADSAPVP-IWLTRLDRTRSFVNRAYVDFLGLSHDEALA 217

Query: 116 MRLCDVSDILHIDPNNHIGDLLKRQN----TWYGKTTLWPIEGTNLYVPIDLAALPIYSR 171
                      +     I    +        ++ +      +G   +  +   + P +  
Sbjct: 218 FDWRKALHPEDL---PRILAQQQTGECSLKPFFLEARYRRADGH--WRWLRSESQPRWDA 272

Query: 172 NREFSGFRGFGIVHVNRVDNDPR------------------ALGKRLDKKFSHLHEIKKG 213
           N +  GF   G+ H                           A  +  + +   + +    
Sbjct: 273 NGQHIGF--IGVAHDVTAAKQGEIELRRINETLEERIRERTAQLEANEARMRAIFDTSNQ 330

Query: 214 HSSVEKEKYDIFSQQS------PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
           + ++   +  I               + +         ++ H   V +  +         
Sbjct: 331 YQAILDTEGRITHVNRIAVDGMRAGGVDVIGHPLWDAPWFVHTPGVSEMLRKAFARVLAG 390

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP--ET 325
                E            +     L +        ++     +     +E    +   E 
Sbjct: 391 DSFRTEVRLDFANGDRHFELSMRPLFDQHDAIMGAVAEAVDITERIQGEELLRQSQKMEA 450

Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
           V +       +   NL     S     + + + +      +  + +  + +     + + 
Sbjct: 451 VGQLTGGVA-HDFNNLLTIIRSATDFLRRRDLPEERRRRYVDAISETVERASKLTGQLLA 509

Query: 386 LYRSDR 391
             R   
Sbjct: 510 FARRQP 515


>gi|307244128|ref|ZP_07526246.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Peptostreptococcus stomatis DSM 17678]
 gi|306492499|gb|EFM64534.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Peptostreptococcus stomatis DSM 17678]
          Length = 426

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 78/368 (21%), Positives = 167/368 (45%), Gaps = 30/368 (8%)

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRKPFTVFLEQNT 505
           ++ +  QL +I+++ S+GI +I+    +   N        +     +   P +  ++ + 
Sbjct: 81  LDNKNRQLDAIIKSVSNGIIVIDINKRVYLINSVARDYIDFRSSGKLEGMPISSIVKND- 139

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT----MHDI 561
              +  ++  + +  +  ++ K         ++  ++I   K+       ++    + DI
Sbjct: 140 --ELLDFI--VYNAGMSTSVSKEI--KDTSGRIFKVKIDPVKMHLEKDLVISSVINIEDI 193

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           SE  + +              + + DF A VSHE++TPLT+I GF E +K      + + 
Sbjct: 194 SERIRLE--------------NIRRDFAANVSHELKTPLTSIQGFIETLKVND-DNIESA 238

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
               + + ID   + +  ++ND+L +S IE G + L  E V L +   + + L +    +
Sbjct: 239 TRKRFLDIIDNESSRLRILINDILMLSSIE-GDIVLSLEKVDLKKENKKILDLFEDKMVK 297

Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
           K++ I   + N +  I       K++ +N++SNAI +   GG + +S      ++  + +
Sbjct: 298 KQVNIYFEY-NGLETIQTHREYYKELMINLISNAIKYNRPGGYVKVSF-FEDEDDYRICI 355

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            D G+G+   E E+  + F ++  S+    +GTGLGL + K ++ +  G   + S   +G
Sbjct: 356 EDNGIGIGVEEQERIFERFYRVTKSRNKEIDGTGLGLAIVKHIILSLGGDIGLESVLGQG 415

Query: 802 TLIEIIFP 809
           +  +I  P
Sbjct: 416 SKFKISLP 423


>gi|282898666|ref|ZP_06306654.1| Histidine kinase, HAMP region protein [Cylindrospermopsis
           raciborskii CS-505]
 gi|281196534|gb|EFA71443.1| Histidine kinase, HAMP region protein [Cylindrospermopsis
           raciborskii CS-505]
          Length = 644

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 81/258 (31%), Positives = 136/258 (52%), Gaps = 7/258 (2%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           +   K    +L  A K A+  ++ KS FLA  SHE+R PL  II    ++++        
Sbjct: 385 VERLKAWTEELEMAWKEAKSANTVKSQFLANTSHELRNPLNIIINCVRLVRDGLCD--DK 442

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
              +E+    D +   +L I+NDLLDISKIE+GK+++   P+ L + + E I+L  +   
Sbjct: 443 EEELEFLKKADDTAIHLLGIINDLLDISKIEAGKLSVVMIPLELRQLLLEVINLQSVNVQ 502

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EV 737
           +K + ++   +  +  I  D   +KQ+ +N++ NA  FT  G  I IST          V
Sbjct: 503 KKGLQLKCEISEQVIPIKGDRIKLKQVLINVIGNATKFTEEGS-ITISTKVIKQHSKLYV 561

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS- 796
           ++ V DTG+G+   + +K  +PF  +  +   + EGTGLGL +++ +++   GK  + S 
Sbjct: 562 VISVVDTGIGIDPQQQQKLFRPFVMVDGTTTRKFEGTGLGLAISRNLIELMGGKITLESL 621

Query: 797 TPAKGTLIEIIFPLYDTS 814
              +GT ++II PL D S
Sbjct: 622 GLNRGTTVKIILPLIDIS 639


>gi|126658520|ref|ZP_01729668.1| sensory transduction histidine kinase [Cyanothece sp. CCY0110]
 gi|126620262|gb|EAZ90983.1| sensory transduction histidine kinase [Cyanothece sp. CCY0110]
          Length = 400

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 86/245 (35%), Positives = 140/245 (57%), Gaps = 3/245 (1%)

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
           +K+    +  +  S HKSD+L+ VSHE+RTPL  I+GFS++++ + +G L N +  +Y N
Sbjct: 157 DKIQSDNQKLQSYSDHKSDYLSHVSHELRTPLAGILGFSKMLREEIYGTL-NDKQKQYVN 215

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I  SG  +L +VND LD+SKIE+ K  L  E V++++    AIS+VQ  A+E+ + +  
Sbjct: 216 GIRISGEHLLALVNDFLDLSKIEANKEELFLETVAVEDICLAAISMVQPKADEQNLNLLL 275

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748
             ++ +     D R +KQI +N+LSNAI FT  G  + +         +   V DTG+G+
Sbjct: 276 KLSDQVDFCKVDQRKIKQILINLLSNAIKFTEKGS-VTLEVDKID-CLLTFCVVDTGIGI 333

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
              + +K  +PF QI ++   + +GTGLGL L+K +   + G   + S   KG+   +  
Sbjct: 334 KEEDQQKLFQPFQQIHSNLSRKHKGTGLGLALSKKLAQLHQGDLTLQSEYGKGSCFTLEL 393

Query: 809 PLYDT 813
           PL + 
Sbjct: 394 PLREV 398


>gi|261250376|ref|ZP_05942951.1| sensory box histidine kinase/response regulator [Vibrio orientalis
           CIP 102891]
 gi|260938945|gb|EEX94932.1| sensory box histidine kinase/response regulator [Vibrio orientalis
           CIP 102891]
          Length = 1199

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 85/387 (21%), Positives = 160/387 (41%), Gaps = 26/387 (6%)

Query: 436 EDVDTRINKRKMEIEVMQ-----LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490
                 + +  ++ EV       L  +LEA  + +   + +  I + ++           
Sbjct: 330 AIAQESLRQTTLKQEVQNNLYAALR-LLEALYEQVITQDEQLQIDTLSQTTQDYLSLFTH 388

Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI-----TLGSTKEEKLLSLRIII 545
               +     LE          +  I      Q +        T        +    +++
Sbjct: 389 LTALRSEKSQLELALTQSHQDIINAIQPGFESQLVAVEESGNITTNLAIGGGIFLFTLLL 448

Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
             L  +  ++         ++   KL+ A+  A   ++ KSDFLA +SHEIRTP+ AIIG
Sbjct: 449 LGLLANKSHAA-------LERFAEKLAVARDEANSANTAKSDFLANMSHEIRTPMNAIIG 501

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
            S +                Y + +  S + +L ++ND+LD SKIE+GK+++      L+
Sbjct: 502 MSYLALKTDLTKA----QRNYIHKVKLSADSLLGLINDILDFSKIEAGKLDIENVDFHLE 557

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG- 723
             +    +LV L A+E+ + +      ++P  ++ D   + Q+ +N+ +NA+ FT  G  
Sbjct: 558 NVLDNITNLVGLRASERGLELLIHIERDVPTTLVGDPLRLGQVLINLANNAVKFTEKGEI 617

Query: 724 QIIISTTHTSNEEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           +I +       ++V     V D+G+GMT  + +K    F Q  +S   +  GTGLGL ++
Sbjct: 618 KISVRVAKRQGDDVELEFSVEDSGIGMTKEQTDKLFSKFTQADSSTTRKYGGTGLGLAIS 677

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIF 808
           K +     G   + S   +G+      
Sbjct: 678 KELSQLMGGDIRVESEFGQGSRFSFSI 704


>gi|255009663|ref|ZP_05281789.1| putative two-component system histidne kinase/reponse regulator
           fusion protein [Bacteroides fragilis 3_1_12]
 gi|313147448|ref|ZP_07809641.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
 gi|313136215|gb|EFR53575.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
          Length = 1014

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 85/400 (21%), Positives = 167/400 (41%), Gaps = 32/400 (8%)

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATS------DGI---AIINREGIILSTNRAVSKLFG 486
           +  +  + ++K+     +L   L+  +      D +    + +    I  ++        
Sbjct: 491 DSTELHLAQQKLTATNHKLSMALDVANIIPWKWDLLSKTILCDINKPIELSSPG--NNVN 548

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRI- 543
                +    +   + +     +     +++     +  E  ++        K+  +   
Sbjct: 549 DEQLAVPDTQYFSKIFKEDRKRVEQAYKDLIEGRTDKVKEEYRVINVQNHTHKVEWVEAQ 608

Query: 544 IIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
              +    +        +   I++ K+ + +L+ AK  AE+ +  KS FLA +SHEIRTP
Sbjct: 609 AAVESRDENGNPTTLVGSSLVITKRKKMEMELTTAKDRAEESNRLKSAFLANMSHEIRTP 668

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L AI+GFS ++ +            EY N I+ +  L+L +++D+LD+SKIE+G +   +
Sbjct: 669 LNAIVGFSGILASTD----EEEEKREYVNIIENNNTLLLQLISDILDLSKIEAGTLEFQY 724

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719
             V L+  + E  S +QL    + + +      +   +  +   V Q+ +N+++NAI FT
Sbjct: 725 SNVELNAVMKELESTLQLKIKSEAVKLEFVPPADRCLVHLEKNRVSQLIINLVTNAIKFT 784

Query: 720 PSGGQIIISTTHTSNE-EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
             G    I   +     E+   V DTG G+   E E     F ++ +      +GTGLGL
Sbjct: 785 EKGS---IRFGYELRGKELYFYVADTGCGIAKDEQESIFGRFVKLNSF----AQGTGLGL 837

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFP--LYDTSHP 816
            + + +V+   G   + S   KG+      P     T+ P
Sbjct: 838 SICQTLVNHMGGHIGVESEKGKGSTFWFTLPYEAASTAEP 877


>gi|192360747|ref|YP_001981263.1| two-component hybrid sensor and regulator [Cellvibrio japonicus
           Ueda107]
 gi|190686912|gb|ACE84590.1| two-component hybrid sensor and regulator [Cellvibrio japonicus
           Ueda107]
          Length = 758

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 98/490 (20%), Positives = 202/490 (41%), Gaps = 33/490 (6%)

Query: 334 FVYSHGNLFY-ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
            + S+  L +  N S ++    K + ++ + GG         ++         L    + 
Sbjct: 155 LLSSNDRLLFEVNRSNIINHGLKPLPELILNGGTE-----IDVARLYREGQASLVAMQKQ 209

Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG--IEPEDVDTRINKRKMEIE 450
             A    L  +    E   A+     ++  +  +N+ Q+   I  +++  +  + ++E  
Sbjct: 210 LQAREKTLRQLSDKTEEQAALNRRLEQQLAELNQNIRQSDALIANQNLQLQEQEAQLEKN 269

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKL------FGYPVEDILRKPFTVFLEQN 504
             +  ++L+   +              N    +L           + + +   T+ +++ 
Sbjct: 270 KQERTALLQEMDE---------RTRELNAQKVQLQTISTTIETREKRLTQLDETIRIQEA 320

Query: 505 TPSVMNHYLTEILSL---DLRQTLEKITLGSTKEEKLLSLRIII-KKLPFSSCYSLTMHD 560
             +     +  +              + L       + ++ +    K   +   +    D
Sbjct: 321 EIAAQKRAIAGLDETVDAQKTTLRYMLGLVILGVLLIFTIFVAYHMKRRDNQRLAAHSKD 380

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           +   +  K++L+ AK+ AE  S  KS+FL+ +SHE+RTPL AIIG++E++  +      +
Sbjct: 381 L---QIAKDRLAIAKRKAEDASQAKSEFLSLMSHELRTPLQAIIGYTELVIEE-LKLDSD 436

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
            R+++    +  +G  +L ++N +LD++KIESG M+L    V L   V EA   V     
Sbjct: 437 DRHVKDLERVIHNGERLLRLINGVLDMAKIESGSMDLDLTEVRLSSLVDEARGTVAPLLE 496

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
           +  I +     +      AD   +  I +N+L NA  F P G  + I   +   E++ + 
Sbjct: 497 KSEIQVVQEVDDGESLPKADPEKLLHILINLLGNASKFAPKG-VVSIK-AYHRAEKIYIS 554

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V DTG+GM+  + +    PF Q  +    + +G+GLGL + + + +   G   + S   K
Sbjct: 555 VADTGIGMSPEQQQHIFDPFRQADSGTTRKYQGSGLGLSITRQLCELMGGSIRVESELGK 614

Query: 801 GTLIEIIFPL 810
           G+   +  PL
Sbjct: 615 GSTFIVELPL 624


>gi|207722618|ref|YP_002253054.1| composite two-component regulatory protein (sensor kinase and
           response regulator hybrid) [Ralstonia solanacearum
           MolK2]
 gi|206587800|emb|CAQ18382.1| composite two-component regulatory protein (sensor kinase and
           response regulator hybrid) [Ralstonia solanacearum
           MolK2]
          Length = 797

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 103/634 (16%), Positives = 215/634 (33%), Gaps = 48/634 (7%)

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           ++  G               +P      + +  +      H       +       +   
Sbjct: 35  DLLDGTRLHVSAAARQAWGVAPDTLCGSRERWLAHVHPGDHAALGAAWQGLA----QGRD 90

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS----HRNHPSLSAYFDEGENLTPE 324
              +  +  I+  ++  ++    L      +   +             A   E E     
Sbjct: 91  FALEYRWIGIDGAEHRVRECGYRLPAQDGAATHAVGVVEDMTQRLRTLAELTESEFQLQW 150

Query: 325 TVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
             +  P P   +     + +AN ++       +VD +        + D         +  
Sbjct: 151 LAESIPFPIVQLGPDHRIRFANHAYAQRFGLPAVDLLGR-----HVRDLMGHDAYQRVLA 205

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
            ++       +     L       +    +      +     + +    I  +  + +  
Sbjct: 206 HLMKGFAGQRVDFEMEL-EYPPAGQGRRFIHAAYTPQRGSDGKVVALVCIIEDITERKEA 264

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF-LE 502
           +R+      +  +++E   D IA ++     +  NRAV++ FG P  +++ +  +   L 
Sbjct: 265 ERERFRHQREFVTLMENAPDIIARLDPALRCVYINRAVTEAFGVPSGELIGRTLSDSGLP 324

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGS-TKEEKLLSLRIIIKKLPFSSC----YSLT 557
                 +             Q L        T+  ++      +              L 
Sbjct: 325 ARVAQPLEAAAQCAFDTGSEQALTLHLKADATRPPRVAHYNARVIPEADRHGEIESALLI 384

Query: 558 MHDISEWKQEKNKLS-------HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
           ++D++E  + + +          A+  AE  +  +  FLA VSHE+R+PL  I  ++ V+
Sbjct: 385 IYDVTERTEAERERDALLLREQAARAQAEAAAHARDQFLAVVSHELRSPLNGIQSWAYVL 444

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
           +NQ     G        + I       + ++ DLLD +++ SGK+ L  +P  L  A+  
Sbjct: 445 ENQLAD--GPELVRRALSGIRTGVAQQVRLIEDLLDATRVMSGKLRLTRQPFPLRTALER 502

Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
           A+  V+  A E+RI +  +++ +   I  D   ++QI  N+LSNAI FT  GG + ++  
Sbjct: 503 ALDSVRAQAAERRITLHEAWSLDAQEIDGDADRIQQIVWNLLSNAIKFTQEGGDVWLAAD 562

Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG--------EGTGLGLPLAK 782
            +  E   + VRD G G+    +     PF Q   S   R                   K
Sbjct: 563 MS-GEAARIVVRDNGRGIAPAFVPHLFDPFRQADGSYTRRTGGLGLGLAL--------VK 613

Query: 783 AMVDANMGKFYIFS-TPAKGTLIEIIFPLYDTSH 815
            + + + G  +  S    +G    +  PL++ + 
Sbjct: 614 RLTELHGGLVHAHSDGEQRGATFAVYLPLHEGAE 647



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 35/391 (8%), Positives = 76/391 (19%), Gaps = 20/391 (5%)

Query: 72  NTFVFDPIPRTVRFTWNIDA-HGYLKEISEELPKTIGNYAFKMIG--MRLCDVSDILHID 128
           +          +   W  D   G    +S    +  G     + G   R           
Sbjct: 17  SAPRRSSGTEPLDVFWVDDLLDGTRLHVSAAARQAWGVAPDTLCGSRERWLAHVHPGDHA 76

Query: 129 PNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNR 188
                   L +   +  +     I+G    V      LP              G+V    
Sbjct: 77  ALGAAWQGLAQGRDFALEYRWIGIDGAEHRVRECGYRLPAQDGAAT----HAVGVVEDMT 132

Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA 248
                 A     + +   L E            + I               V  L  +  
Sbjct: 133 QRLRTLAELTESEFQLQWLAESIPFPIVQLGPDHRIRFANHAYAQRFGLPAVDLLGRHVR 192

Query: 249 HKD-----DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303
                     +          +      + ++      +      +   + +  +    +
Sbjct: 193 DLMGHDAYQRVLAHLMKGFAGQRVDFEMELEYPPAGQGRRFIHAAYTPQRGSDGKVVALV 252

Query: 304 SHRNHPSLSAYFDEGE----NLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVD 358
                 +     +             ++  P             Y N +        S +
Sbjct: 253 CIIEDITERKEAERERFRHQREFVTLMENAPDIIARLDPALRCVYINRAVTEAFGVPSGE 312

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
            I      S L   P                  +  A +  L                  
Sbjct: 313 LIGRTLSDSGL---PARVAQPLEAAAQCAFDTGSEQALTLHLKADATRPPRVAHYNARVI 369

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEI 449
            +A++  E      I  +  +    +R+ + 
Sbjct: 370 PEADRHGEIESALLIIYDVTERTEAERERDA 400



 Score = 68.5 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 34/401 (8%), Positives = 86/401 (21%), Gaps = 18/401 (4%)

Query: 56  DQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIG 115
           D  Q   +     +SE    +            +     ++  +    +  G  A  ++G
Sbjct: 130 DMTQRLRTLAELTESEFQLQWLAESIPFPIV-QLGPDHRIRFANHAYAQRFGLPAVDLLG 188

Query: 116 MRLCDV-SDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNRE 174
             + D+     +     H+      Q   +     +P  G      I  A  P    + +
Sbjct: 189 RHVRDLMGHDAYQRVLAHLMKGFAGQRVDFEMELEYPPAGQGRRF-IHAAYTPQRGSDGK 247

Query: 175 FSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP---- 230
                   I+       +      R  ++F  L E      +                  
Sbjct: 248 VVAL--VCIIEDITERKEAERERFRHQREFVTLMENAPDIIARLDPALRCVYINRAVTEA 305

Query: 231 --PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288
              P   +  +  S +   A     L+        +                        
Sbjct: 306 FGVPSGELIGRTLSDSGLPARVAQPLEAAAQCAFDTGSEQALTLHLKADATRPPRVAHYN 365

Query: 289 FGTL--QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANP 346
              +   +   E    L      +     +   +                      +A  
Sbjct: 366 ARVIPEADRHGEIESALLIIYDVTERTEAERERDAL-----LLREQAARAQAEAAAHARD 420

Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
            FL +  ++    +      + +L+         ++  +                 +   
Sbjct: 421 QFLAVVSHELRSPLNGIQSWAYVLENQLADGPELVRRALSGIRTGVAQQVRLIEDLLDAT 480

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
           R  S  +         +       + +  +  + RI   + 
Sbjct: 481 RVMSGKLRLTRQPFPLRTALERALDSVRAQAAERRITLHEA 521



 Score = 57.7 bits (138), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 26/257 (10%), Positives = 66/257 (25%), Gaps = 13/257 (5%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
            +D       I+  + +  G  + ++IG  L D      +             +T   + 
Sbjct: 288 RLDPALRCVYINRAVTEAFGVPSGELIGRTLSDSGLPARVAQPLEAAAQCA-FDTGSEQA 346

Query: 148 TLWPIEGTNLYVPIDLAA----LPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
               ++      P         +P   R+ E        I++      +       L  +
Sbjct: 347 LTLHLKADATRPPRVAHYNARVIPEADRHGEIE--SALLIIYDVTERTEAERERDALLLR 404

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
                   +  +    +   + S +   P   +++    L    A   ++++     + T
Sbjct: 405 EQAARAQAEAAAHARDQFLAVVSHELRSPLNGIQSWAYVLENQLADGPELVRRALSGIRT 464

Query: 264 SEESSLPEQEDFHTI------NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
                +   ED           L    +     T    + +S    +     +L   +  
Sbjct: 465 GVAQQVRLIEDLLDATRVMSGKLRLTRQPFPLRTALERALDSVRAQAAERRITLHEAWSL 524

Query: 318 GENLTPETVDKCPIPFF 334
                    D+     +
Sbjct: 525 DAQEIDGDADRIQQIVW 541


>gi|302382311|ref|YP_003818134.1| integral membrane sensor signal transduction histidine kinase
           [Brevundimonas subvibrioides ATCC 15264]
 gi|302192939|gb|ADL00511.1| integral membrane sensor signal transduction histidine kinase
           [Brevundimonas subvibrioides ATCC 15264]
          Length = 580

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 107/407 (26%), Positives = 194/407 (47%), Gaps = 17/407 (4%)

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
                 +              +    +     +TR+     E    ++ ++L +      
Sbjct: 157 GAPRTVIGMATVSAVLAAVAAVLAVRLAWRIRETRLA--IAEETTRRVEALLSSQPGLTL 214

Query: 467 IINREGIILSTNRAVS-KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
           +++  G +     +    L    V+ +  +     +       +       L     Q  
Sbjct: 215 VLDASGRVYGAYGSAPPALL---VDALFEQGLIAAVHAPDRRPILDAFDAALKGQPAQIS 271

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSC---YSLTMHDISEWKQEKNKLSHAKKIAEKES 582
                   +      + +I+++   ++          D +     +  L  A+  AE ++
Sbjct: 272 FAPRQALDR-----RVTLIVRRADDAAGHPRLIAQAFDGTRQFATEIGLEAARAEAEAQN 326

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
           + K+ FLA +SHE+RTPL A++GFS+V++ + FGPL  P+Y EYA+ I  +G+ +LD++ 
Sbjct: 327 AGKTRFLANMSHELRTPLNAVLGFSDVMRQRLFGPLS-PKYAEYADNIHEAGSHLLDLIG 385

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702
           D+LD+SKIE+ +  L  EP    E VS A++LV+  A +  + + +   ++   + AD R
Sbjct: 386 DVLDVSKIEAERYELSREPFDAREVVSAAVALVRGTATDGGVTLASLLPDDPLAVEADRR 445

Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
           ++KQI LN+LSNAI FTPSGG + ++   T    + + V DTGVG+   +L++  +PF Q
Sbjct: 446 ALKQITLNLLSNAIKFTPSGGSVTLTLE-TIGPYLEMVVADTGVGIAARDLKRLGRPFEQ 504

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
              + Q   +GTGLGL L +A+ + + G+  I ST  +GT + +  P
Sbjct: 505 AGEADQRA-KGTGLGLSLVRALAELHGGRMSIESTLGEGTAVTVRLP 550


>gi|91225175|ref|ZP_01260397.1| histidine protein kinase PhoR [Vibrio alginolyticus 12G01]
 gi|91190118|gb|EAS76389.1| histidine protein kinase PhoR [Vibrio alginolyticus 12G01]
          Length = 432

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 71/364 (19%), Positives = 146/364 (40%), Gaps = 29/364 (7%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           ++   + +  +  E+  D + +   EG I+  N+    L G+   +   +P +  +    
Sbjct: 92  ELTNLIRRFRNGAESLPDAVVVFRAEGNIVWCNKLAQHLLGFHWPEDSGQPISNLIRTPD 151

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
                +       L++R  L    +          L + I        + + + D+S+ K
Sbjct: 152 FIKYLNKKDFSEPLEMRSPLNVERM----------LELRIVPYTEGE-HLMVVRDVSQLK 200

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           Q +                + +F A VSHE+RTP+T + G+ E+   +    +    + +
Sbjct: 201 QLEG--------------MRRNFFANVSHELRTPMTVLQGYLEM--TEDPDMVVGSMWSK 244

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
               +    N +  +VN LL +SKIE+  M+   E V++   +          + + +  
Sbjct: 245 AHGVMTEQLNRMNSLVNQLLTLSKIEAAPMHELEEVVNVPAMLEVLEKEAVSLSGDNQHK 304

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           ++     ++ R+L D   ++    N++ NA+ +TP G  I +    TS     L V D+G
Sbjct: 305 LKFDVDASL-RVLGDDDQLRSAISNLVYNAVKYTPPGANINVRWFQTSQG-ACLEVEDSG 362

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
            G+    L +  + F ++  ++     G+GLGL + K  +  +     I S    G+   
Sbjct: 363 DGIEPQHLHRLTERFYRVDKARSRDTGGSGLGLAIVKHALSHHDSHLEIHSEVGVGSKFS 422

Query: 806 IIFP 809
            + P
Sbjct: 423 FVLP 426


>gi|88861266|ref|ZP_01135898.1| hypothetical protein PTD2_09494 [Pseudoalteromonas tunicata D2]
 gi|88816747|gb|EAR26570.1| hypothetical protein PTD2_09494 [Pseudoalteromonas tunicata D2]
          Length = 896

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 77/246 (31%), Positives = 127/246 (51%), Gaps = 6/246 (2%)

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           KQ +  L   K+ ++K +  KS+FLA +SHEIRTP+  I G   ++  Q        +  
Sbjct: 513 KQTEK-LRLEKQKSDKANKIKSEFLANMSHEIRTPINGIKGLHYLVLQQ----TDMRKVK 567

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           EY +  + + +++L ++ND+LD SKIE+GK+ L +  V      S+  +LV+   N K I
Sbjct: 568 EYIHQAENAVDVLLKVLNDILDFSKIEAGKLQLEYSEVYFTALFSQLETLVRTELNNKDI 627

Query: 685 LIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
            +   +    P  +  D   +KQ+ LN+L+NAI FT   G+I ++     N+++   V+D
Sbjct: 628 TLLIHYPKISPLSMFTDKIRLKQVLLNLLNNAIKFTEPDGKIELTMVQLDNKQLRFSVKD 687

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
            G+G+ +   ++    F Q  NS   +  GTGLGL + K +V+   GK    S    G+ 
Sbjct: 688 NGIGIADLAQKQLFDAFTQADNSTSRKYGGTGLGLSICKHLVELMGGKIGFVSELNVGSE 747

Query: 804 IEIIFP 809
                P
Sbjct: 748 FYFTLP 753


>gi|229004155|ref|ZP_04161956.1| hypothetical protein bmyco0002_11200 [Bacillus mycoides Rock1-4]
 gi|228757016|gb|EEM06260.1| hypothetical protein bmyco0002_11200 [Bacillus mycoides Rock1-4]
          Length = 466

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 67/229 (29%), Positives = 117/229 (51%), Gaps = 5/229 (2%)

Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
           + +F A VSHE+RTPL+ I G+SE I +   G     +  ++   I R    +  +V+DL
Sbjct: 239 RKEFSANVSHELRTPLSYIKGYSEAILD---GVAKGQQQSKFTQLIHREAGRMQRLVHDL 295

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704
           LD++++E     L  +P+   + + + +   +L   EK + I T    +I  +  D   +
Sbjct: 296 LDLAQLEGDHFPLKKQPIVFAQLIEDVLETYELKCMEKELYISTDLDPDII-VTIDEDRM 354

Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764
           +Q+  N+L NAI +T   G I I        +  L+++DTG+G+    LE+  + F ++ 
Sbjct: 355 QQVLHNLLDNAIRYTNQNGNISIQLKKKDR-QCELKIKDTGIGIDAEHLEQLGERFYRVD 413

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
             +  R  GTGLGL + K +V  + G++ + S   KGT + I  P  + 
Sbjct: 414 KGRSRRHGGTGLGLAIVKQIVHIHDGEWRVESEKGKGTTVIIKLPANEE 462


>gi|52079393|ref|YP_078184.1| two-component sensor histidine kinase [Bacillus licheniformis ATCC
           14580]
 gi|52784753|ref|YP_090582.1| hypothetical protein BLi00981 [Bacillus licheniformis ATCC 14580]
 gi|319646826|ref|ZP_08001055.1| sensor protein [Bacillus sp. BT1B_CT2]
 gi|52002604|gb|AAU22546.1| two-component sensor histidine kinase [Bacillus licheniformis ATCC
           14580]
 gi|52347255|gb|AAU39889.1| putative protein [Bacillus licheniformis ATCC 14580]
 gi|317391414|gb|EFV72212.1| sensor protein [Bacillus sp. BT1B_CT2]
          Length = 674

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 98/564 (17%), Positives = 203/564 (35%), Gaps = 47/564 (8%)

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ--NNSKESFEYLSHRNHPSLSA 313
               P+   E+  L  Q  + T+   + +        Q           L+      ++ 
Sbjct: 151 AANAPVSGGEDGQLHLQHLYRTVKELEASNDALVSANQKLQEENRKLTALNRAFEKKVNE 210

Query: 314 YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
                 ++            F+     L    P    +   K+ D    A  L+      
Sbjct: 211 LNTLKNDMNNLLTSTNIAAVFLDQELKLKLFTPEAANMFDLKNEDLSRPADKLTERFKYE 270

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
             +D+            RT       +   +       A+  IP+  +    E       
Sbjct: 271 GYADDLR----------RTLYENKTVVKEFEMPDGGWYAVKMIPYYTSGNMVE--GIVVT 318

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
                + ++    + I        ++ +   I I + +G +   N+   ++FG   +DI+
Sbjct: 319 FTNVTELKMTNEALHISSQ----AIDQSPANILITSVDGSVTYANKRFCRMFGKHQDDII 374

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553
                    ++          + +      +         +E++    +I +  +  S+ 
Sbjct: 375 GGNVFDIYRKHFHCEDLTRFWKRVLEKKPWSG--ELNYQDEEQQDRWEQISLVPVEDSAG 432

Query: 554 ----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                 L   DI+  K+ +  L     +  +  S      A ++HEIR PLT++ GF ++
Sbjct: 433 NVQQVMLISEDITNQKRSEKML-----MKSEMLSAVGQLAAGIAHEIRNPLTSLKGFLQL 487

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           +   +          +YA  +      +  I+N+ L ++K +S      F+PV ++  V 
Sbjct: 488 MIQSK------KYQKDYAEVMMSEFIRLEAIINEFLVLAKTKSNT----FDPVQVNSIVE 537

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS-GGQIIIS 728
           +   +++  A    + I    + ++P ILA    +KQ+ +NIL NAI       G I I 
Sbjct: 538 DVCMVLESQAVLNNVRIEKQLSGDLPEILAVSNELKQVFINILKNAIEAMEDAEGFITIR 597

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
            ++   + V +   D G G++   LEK  +PF         + +GTGLGL +   +++ +
Sbjct: 598 -SYFEKDSVFITFEDQGKGISKEVLEKLGEPFYTT------KEKGTGLGLMVTFKIIENH 650

Query: 789 MGKFYIFSTPAKGTLIEIIFPLYD 812
            G  +  S   KGT++++  P+ +
Sbjct: 651 GGSIHFESEEGKGTIVKLKLPIKE 674



 Score = 48.1 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 10/111 (9%), Positives = 31/111 (27%), Gaps = 5/111 (4%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKRQNTWYGKTTLW 150
            G +   ++   +  G +   +IG  + D+     H +        +  +  W G+    
Sbjct: 352 DGSVTYANKRFCRMFGKHQDDIIGGNVFDIYRKHFHCEDLTRFWKRVLEKKPWSGELNY- 410

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
             +         ++ +P+          +   I            +  + +
Sbjct: 411 -QDEEQQDRWEQISLVPVEDSAGNVQ--QVMLISEDITNQKRSEKMLMKSE 458


>gi|54302218|ref|YP_132211.1| two-component sensor [Photobacterium profundum SS9]
 gi|46915639|emb|CAG22411.1| hypothetical two-component sensor [Photobacterium profundum SS9]
          Length = 680

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 78/253 (30%), Positives = 132/253 (52%), Gaps = 10/253 (3%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           ++  +   ++L  A++ AE+ +  KS+FLA +SHEIRTP+  IIG S +++         
Sbjct: 53  VNRIRDHYDELELAREEAEEANRKKSEFLANMSHEIRTPMNGIIGLSSLLQEMDM----P 108

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
               EY   ++ S   +LD++ND+LD SKIE+G++ L    ++L E   E  S+  + A+
Sbjct: 109 KDQKEYIQMLNISSLSLLDLINDILDFSKIEAGRLELEHTSLNLFELNKEVESIFLVKAS 168

Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE--- 736
           EK I  + S    IP  +L D   ++Q+  N++SNAI FT +G  + + T   ++ +   
Sbjct: 169 EKSIAFQCSIDKRIPPMLLGDATQLRQVLNNLVSNAIKFTHTG-YVHLHTQLETDTDTET 227

Query: 737 -VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            +   V D+G+G++  + E     F Q   S   +  GTGLGL + + +V    G+  I 
Sbjct: 228 TIRFEVIDSGIGVSADKHEAVFDKFQQADGSTTRKYGGTGLGLSICRQIVHLMGGEIKIS 287

Query: 796 STPAKGTLIEIIF 808
           S   KG+      
Sbjct: 288 SEVDKGSTFYFTI 300


>gi|317485574|ref|ZP_07944451.1| hsp90-like protein [Bilophila wadsworthia 3_1_6]
 gi|316923254|gb|EFV44463.1| hsp90-like protein [Bilophila wadsworthia 3_1_6]
          Length = 1176

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 87/306 (28%), Positives = 141/306 (46%), Gaps = 21/306 (6%)

Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579
                L +      + EK L     + +               + +    +L  AK+ A+
Sbjct: 339 RRTAQLNQELAKYDRAEKELRESRAMLEQSNVELEHRVSERTRDLQAINAELQLAKEAAD 398

Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSE-VIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
             ++ KS FLA +SHEIRTPL  I+ F+E  +  ++  P        Y   I +S   +L
Sbjct: 399 AATTAKSQFLANISHEIRTPLHGIMAFAELALLKEKTPP------HRYLRAILQSSRALL 452

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI-PRI 697
           +I+NDLLD+SKIE+G + L   P  LD+ V    ++    A+   I +      N+   +
Sbjct: 453 EIINDLLDVSKIEAGHLELEQAPFMLDDVVHHVCTVALHNAHAGGIELVVDMDPNMQIAL 512

Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTT-----------HTSNEEVILR--VRDT 744
           + D   ++QI +N+++NA+ FT  GGQI ++                   V +   VRDT
Sbjct: 513 IGDAGRLQQIIMNLVTNAVKFTGPGGQICVTLKQGHAEPLPSDTCPEQRRVQIICFVRDT 572

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           GVG+    L +  +PF Q+  S   R  GTGLGL + + +V+   G+ ++ S P  G+  
Sbjct: 573 GVGIAPEFLGQLFQPFRQVDASTTRRHGGTGLGLCICRQLVEMMHGEIWVESEPNVGSTF 632

Query: 805 EIIFPL 810
               PL
Sbjct: 633 AFSIPL 638


>gi|238753119|ref|ZP_04614568.1| hypothetical protein yrohd0001_39490 [Yersinia rohdei ATCC 43380]
 gi|238708669|gb|EEQ00938.1| hypothetical protein yrohd0001_39490 [Yersinia rohdei ATCC 43380]
          Length = 1195

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 92/386 (23%), Positives = 167/386 (43%), Gaps = 18/386 (4%)

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
           +  E    + ++ ++E ++    ++  A    + +++ EG + S N A +  F   + + 
Sbjct: 557 LSREIRMRKKSQLELETQLSFRQTLSNAIPMPVYVLSMEGELCSYNHAFTTFFSPELREE 616

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ--TLEKITL---GSTKEEKLLSLRIIIKK 547
           +R            + +   +   +   L     L    +   G      L  L + I  
Sbjct: 617 IRTSLFDSRHP--LAGIFSTIRHDVEKGLPSDSVLAHHLILNNGQEDRHILHWLTLCIMP 674

Query: 548 LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
                       DI+E KQ    L   K  A + +  KS FLA +SHEIRTP++ I+GF 
Sbjct: 675 ANVPPTIICGWQDITESKQLMKALQIEKDKAIQANQAKSSFLASMSHEIRTPISTIMGFL 734

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
           E++      P  N    E       S   +L ++ ++LD+ KIESG      E V ++  
Sbjct: 735 ELLSTHNQSP--NEE-KESIQLAYASAQHLLGLIGNILDMEKIESGNFEPSPEWVDVELL 791

Query: 668 VSEAISLVQLYANEKRILIRT-SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726
           +   +   +  A +K++ +   +       +  D ++ +Q+  N LSNAI FT  G  I 
Sbjct: 792 IESTLRAFEGLAKQKQLQLTFVNRLVKGEYLWLDPQAFRQVLSNFLSNAIKFTQQGS-IE 850

Query: 727 IS----TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
           +     T   +  ++I+ V DTG G++  E +   KPF Q   S   +  G+GLGL + +
Sbjct: 851 VRAETHTESAAQTQLIMSVTDTGPGISQEEQQLLFKPFSQT--SSGKQQTGSGLGLMICR 908

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIF 808
            ++    G+  +FS P +GT + ++ 
Sbjct: 909 ELILRMNGEIKMFSQPGQGTTLTVML 934


>gi|186685533|ref|YP_001868729.1| integral membrane sensor hybrid histidine kinase [Nostoc
           punctiforme PCC 73102]
 gi|186467985|gb|ACC83786.1| integral membrane sensor hybrid histidine kinase [Nostoc
           punctiforme PCC 73102]
          Length = 937

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 82/329 (24%), Positives = 153/329 (46%), Gaps = 12/329 (3%)

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
           + + G      + +P     + +          ++   ++    E   L  +       L
Sbjct: 365 ATILGVYTSRWIARPILHLSQASESIAAGELNQQV---EIPSVNELGRLAQSFNRMAQQL 421

Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKN--KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
           R     +  ++      ++  E + E+   +L  AK  A+  +  KSDFLA +SHE+RTP
Sbjct: 422 RDSFTTIEQTNQQLAKTNEELESRVEERTHELKEAKLTADAANHAKSDFLANMSHELRTP 481

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  I+G+++++         + +     + I + G+ +L ++ND+LD+SKIE+GK+ L  
Sbjct: 482 LNGILGYAQILARTA----SDEKQQRGIDIIYQCGSHLLTLINDILDLSKIEAGKLELQL 537

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P  L   +   + + ++ A +K I        N    I+AD + ++Q+ +N+L NAI F
Sbjct: 538 VPFYLPAFLQSVVEICRIKAEQKSIEFIYQPPENSAMGIVADEKRLRQVLINLLGNAIKF 597

Query: 719 TPSGGQI-IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
           T  G     +         +   ++DTG+GM+  +LEK   PF Q+ +S + + EGTGLG
Sbjct: 598 TDKGSVTFRVEVLLGDITNLRFYIQDTGIGMSPQQLEKIFLPFEQVGDS-KRQSEGTGLG 656

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           L +++  V+    K  + S    G+    
Sbjct: 657 LAISQRFVELMASKIQVESQLGVGSKFFF 685


>gi|259415156|ref|ZP_05739078.1| periplasmic sensor hybrid histidine kinase [Silicibacter sp.
           TrichCH4B]
 gi|259349066|gb|EEW60820.1| periplasmic sensor hybrid histidine kinase [Silicibacter sp.
           TrichCH4B]
          Length = 770

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 80/266 (30%), Positives = 140/266 (52%), Gaps = 10/266 (3%)

Query: 555 SLTMHD-ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
              + D  +E  + +  L  A++ AE  S  KS+FLA +SHEIRTP+  +IG +EV++  
Sbjct: 217 VGVLEDSFAERDEREQALERAREQAEIASRAKSEFLANMSHEIRTPMNGVIGMAEVLRET 276

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
           +  P        Y + I +SGN +L I+ND+L+ SKIE+GK+ L     +L   V + + 
Sbjct: 277 KLTP----DQEMYTDTIVKSGNALLTIINDILNFSKIEAGKLELTQATFNLRTVVEDVVM 332

Query: 674 LVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIIS-TT 730
           L+   A EK + +   +  ++      D   ++QI  N++ NA+ FT  G   I ++ T+
Sbjct: 333 LLAPKAAEKWVQLTLRYDPDLVEFYDGDAGRIRQIITNVVGNAVKFTSQGSVHIDVTGTS 392

Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
                ++ + V DTG+G+   +L++    F Q+  +     EGTGLGL ++  ++    G
Sbjct: 393 RGKEMDLRISVVDTGIGIPAEKLDRIFHAFEQVDGAATRSFEGTGLGLAISTRLLQLMKG 452

Query: 791 KFYIFSTPAKGTLIE--IIFPLYDTS 814
           + ++ S+  KG++    I  P  D +
Sbjct: 453 RIHVTSSEGKGSVFTIDITLPTSDRA 478


>gi|209527277|ref|ZP_03275787.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
 gi|209492265|gb|EDZ92610.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
          Length = 1051

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 68/267 (25%), Positives = 137/267 (51%), Gaps = 18/267 (6%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           + +Q+  +L      A   +  KS+FLA +SHE+RTPL AI+GF+++++  R       +
Sbjct: 545 QTQQQAAELKRVADAANVANRAKSEFLANMSHELRTPLNAILGFTQLLQRDRTLA---AK 601

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
           + EY   +++SG  +L+++ND+L++SKIE+G++  +     +   +     ++QL A  K
Sbjct: 602 HQEYIKIVNQSGQHLLELINDVLEMSKIEAGRITCNPTEFDIKRCLPAIQVMLQLKAESK 661

Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNE----- 735
            + +      ++P+ +  D   ++Q+ +N++SNAI FT  G   + +S      +     
Sbjct: 662 GLTLNFQVEESVPKFVRTDESKLRQVLVNLISNAIKFTQDGEVSLRVSVGGVDEDLGLSD 721

Query: 736 -------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                   ++  + DTG G+ + E+    + F Q    ++ + +GTGLGL +++  V+  
Sbjct: 722 EDWVSNTYLLFEIIDTGCGIASEEINDLFQAFKQTKAGRESQ-QGTGLGLVISQRFVNLM 780

Query: 789 MGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            G+  + S P +G+      P+     
Sbjct: 781 GGEIKVSSKPGEGSCFSFQIPVGVADQ 807


>gi|253702516|ref|YP_003023705.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           M21]
 gi|251777366|gb|ACT19947.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           M21]
          Length = 342

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 68/366 (18%), Positives = 158/366 (43%), Gaps = 31/366 (8%)

Query: 448 EIEVMQLCS-ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
           + E  ++ + +LE    G+  ++  G +L  N    +L       +L +   +       
Sbjct: 2   QEEPEKIAAMLLERIDCGVVHLDDTGKVLLVNSKAEELLHVQRGQVLGRRVDML------ 55

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQ 566
            +       +        +E        E  ++ +R               + D++  ++
Sbjct: 56  PLRTPLYRVLSEDSRDAPVEMSL-----EGTVVQVRSFGLPAECGGGELYQLRDVTAERK 110

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
           E+ +                 F+A ++H++++PLT I+G+ + +  ++     +P    +
Sbjct: 111 ERRQREE--------------FVAMMTHDLKSPLTVIMGYIQALLGEK--AKIDPSLHLF 154

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
              +D+S   +L +++D+LD  ++E+G + +      +   +       +  A       
Sbjct: 155 LGEMDKSSVKMLSMIDDVLDAYRLEAGLLQIDRRRCDIHPLLEGCSRDGEREAAVHGSCF 214

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
           ++   ++IP +  D + + ++  N++ NA+ FTP  G I  S+       + ++V DTG+
Sbjct: 215 QSELCDDIPPLELDAKQISRVFANLIGNAVKFTPRRGTITFSSEVRD-GFLRVQVADTGI 273

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+   EL +    + +  ++     +GTGLGL ++KA+V+A+ G   + ST  KG+   +
Sbjct: 274 GIPPEELPRIFNQYFRAQSA--HGFKGTGLGLTISKAIVEAHGGSIGVESTAGKGSRFSV 331

Query: 807 IFPLYD 812
           + PL +
Sbjct: 332 LLPLQE 337


>gi|144898537|emb|CAM75401.1| PAS/PAC sensor hybrid histidine kinase [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 613

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 89/624 (14%), Positives = 186/624 (29%), Gaps = 62/624 (9%)

Query: 215 SSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQED 274
             ++ + +  +   SP          + ++   A   + L                +   
Sbjct: 28  RRMDGDGHIRYEWFSPNVETIFGFAPAEMSVTRAGALNALHWADRDDHVRTVRRSADDGR 87

Query: 275 FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA---YFDEGENLTPETVDKCPI 331
                    +       L+ +++   +   H            +   E+     +D    
Sbjct: 88  PCVELFRIISADGQTHWLRGSARPQRQADGHVVWDGAWMDITRWMRAEHHFQTVMDHAED 147

Query: 332 PFFVYSHGN-LFYANPSFLLLTKYK----SVDDIEIAGGLSTLLDAPKLSDN-------N 379
                   + + +AN +   L  +         +      S     P    +        
Sbjct: 148 CILTVDCESGIEWANAATERLFGWAEGGLRGQCLMELIQQSCPPGRPSCHGDQMLACFQR 207

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
               V+  R+D +       +  ++ +   SL +                   I  +   
Sbjct: 208 GTGEVVAIRTDGSTFPFEMTVSEVRSDGRLSLIV-------------------IGRDISR 248

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
            +  +  +     +L    EA   GI + + +G I  +N A   + G   +       T 
Sbjct: 249 RKQTESVLAETEQRLRLTFEAAPMGILVADADGRIRESNPAFHFMSGSHSKITDTARLTD 308

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-----SCY 554
           F+  +    M                 +    +  +      R+       S        
Sbjct: 309 FIPASALPSM--------QTATDGVFCREIAVTGPKGDERRWRLTGSHFHASEKATLPSL 360

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKES--SHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
            L + DI+E  +   +    +++  +             ++HE+   L  I+  +E++  
Sbjct: 361 LLLVEDITETIRAAEERRQMERVLTEGQKLEALGRLAGGIAHELNNMLGPILMGAEMLLR 420

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
                  + +     + I  +     DIV  +L   + E   +N     V L   V +  
Sbjct: 421 ---SATLDDKNRSRCDRIIEAAKHGRDIVRGVLAYCRQERQDLN----AVDLVAVVRQ-F 472

Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
           S +        I +      +   ++ +   + QI LN+ +N        G + +S    
Sbjct: 473 SELAGSILPPAIRLDQHIGPDQAMVMGNGGQITQILLNLANNGRDAMGGKGALAVSLEVV 532

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
              + +L+V DTG GM+     +   PF          G+GTGLGL +   +V A  G+ 
Sbjct: 533 D-GDAVLKVSDTGCGMSEKVAARIFDPFFTTKP----VGQGTGLGLSVVHGLVTAMGGRV 587

Query: 793 YIFSTPAKGTLIEIIFPLYDTSHP 816
            + S   +GT   I  PL D + P
Sbjct: 588 SVKSVSGQGTTFTITLPLADMACP 611


>gi|239995946|ref|ZP_04716470.1| sensory box histidine kinase/response regulator [Alteromonas
           macleodii ATCC 27126]
          Length = 932

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 80/254 (31%), Positives = 131/254 (51%), Gaps = 9/254 (3%)

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           +Q++  L    +  +K +  KSDFLAR+SHEIRTPL AIIG +  +  +      +    
Sbjct: 399 RQQRKALDALTQDLQKATKAKSDFLARMSHEIRTPLNAIIGLT-KLSQR---AAEDKDQQ 454

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
                I+ +   +L I+ND+LD SKIE+GK+++     +LD  V++ I L    A EK I
Sbjct: 455 TNLIQIEGASQTLLSIINDILDFSKIEAGKLDIESTQFNLDALVNQTIRLHLGRAEEKHI 514

Query: 685 LIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT---SNEEVILR 740
            +    + ++P  ++ D   ++QI  N++SNA+ FT  G  I +S   T    + ++   
Sbjct: 515 ELIQHISRDVPLNLIGDPLRIQQILSNLVSNALKFTEDG-LISVSVRCTHNVEDIQLEFE 573

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V+DTG+G+ + +     +PF Q   S   R  GTGLGL + K +V    G+ ++ S   K
Sbjct: 574 VKDTGIGLNSTQKALLFQPFNQGDESISRRYGGTGLGLAICKQLVTLMGGEIWVESQLGK 633

Query: 801 GTLIEIIFPLYDTS 814
           G        +   +
Sbjct: 634 GASFHFTVTVKQDA 647


>gi|237746473|ref|ZP_04576953.1| two-component hybrid sensor kinase/response regulator [Oxalobacter
           formigenes HOxBLS]
 gi|229377824|gb|EEO27915.1| two-component hybrid sensor kinase/response regulator [Oxalobacter
           formigenes HOxBLS]
          Length = 853

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 97/458 (21%), Positives = 182/458 (39%), Gaps = 39/458 (8%)

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
            D+           +    A      T +     +           +         G+  
Sbjct: 112 EDHENYFQAYRKIREGEKTA----TTTYRLKDGQTWREVIFTTISEDDDGRPTFVVGLSG 167

Query: 436 EDVDTRINKRKMEIEVMQLCSILEAT----SDGIAIINRE-GIILSTNRAVSKLFGYPVE 490
           +  +     +K E+E ++L SI + T     D I I N E G         S  F     
Sbjct: 168 DITE----HKKAELENIKLQSIYDFTIQRNYDCILIWNVETGTYE---ARFSDRFDARGM 220

Query: 491 DILRKP------FTVFL--EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK-EEKLLSL 541
               +       F      E++    ++  L   L   L +  +      +    +L   
Sbjct: 221 PPFGRNTSGVRKFAALFVCEEDRRPFLDEMLNASLPEKLDREKDIHLYFRSPQNGELRHK 280

Query: 542 RIIIKKLPF-SSCYSLTMHDISEWKQEKNKLSHAKKIAEKE----SSHKSDFLARVSHEI 596
            + +  +        +T+ DI +  +++ +   A   A +     +  KS FL+R+SH++
Sbjct: 281 ELSLCYIGNKRQRILMTLRDIHDMLKKEEQHRQALTEAFEAAKSANEAKSHFLSRMSHDM 340

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTP+ AIIG + + KN    P    +  +    ID S   +L+++N++LD  +IESGK  
Sbjct: 341 RTPMNAIIGLTTIAKNH---PGDTGKIRDCLEKIDTSSQHLLNLINEVLDTCRIESGKFF 397

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF-ANNIPRILADLRSVKQIALNILSNA 715
           L  +P +L   + + +++ +     ++  +R +        I  D + +++I LNILSNA
Sbjct: 398 LEEKPFTLSGLIGDTLAMTRPAIQRQKHTLRVNVRQLEHETIKGDPQRIQEIFLNILSNA 457

Query: 716 IHFTPSGGQIIISTTHTSN-----EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           I +TP GG I  + + +               D G+GM++   +K  +PF +  +S+   
Sbjct: 458 IKYTPDGGVITWTISESEAAIRGVGCYRFVFEDNGIGMSDEFRKKIFEPFEREKDSRTNH 517

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            +GTGLG+ +A  +     G   + S   KG+   +  
Sbjct: 518 IQGTGLGMTIALTIARLMNGSIDVESEAGKGSRFTVTL 555


>gi|115372064|ref|ZP_01459376.1| cyanobacterial phytochrome A [Stigmatella aurantiaca DW4/3-1]
 gi|115371029|gb|EAU69952.1| cyanobacterial phytochrome A [Stigmatella aurantiaca DW4/3-1]
          Length = 865

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 106/869 (12%), Positives = 241/869 (27%), Gaps = 115/869 (13%)

Query: 48  SFEQSNFTDQNQESVSNT-NYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTI 106
           + ++    D +            + + F         +  W     G     ++      
Sbjct: 4   TEQRLPEPDISSPPPGELLGEDSASDAFRRIAEAIP-QLVWTTRPDGSFDYYNQRWYDYT 62

Query: 107 GNYAFKMIGMRLCDVSDILHI-DPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAA 165
           G    +  G           + +        L+    +  +      +G  LY      A
Sbjct: 63  GLTPGQAHGDGWQGPFHPDDLPEALRRWQHSLRTGEPYEVEYRCRRHDG--LYRWFLGRA 120

Query: 166 LPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF 225
            P+          + FG               + L +  S L        ++E     + 
Sbjct: 121 SPVRDGAGRII--KWFGTCTDIDDPKRATESMRFLAEASSLLSSELNPEVTLEALSQLVV 178

Query: 226 SQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ------------- 272
            + +    + +  +  +L +      D  K      +     S PE              
Sbjct: 179 PRLADWCSIELAQEDGTLRQVSVAHVDPEKVRFAQEMRRRYPSRPEDTHGITQVARTGVP 238

Query: 273 ----EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS---------------- 312
               E    + +      ++   L+  +  S   L                         
Sbjct: 239 EFAPELTDEMLVTGAWDAEHLRLLRELAPRSSMVLPLTARGRTLGAMVLVNAESRRHFTF 298

Query: 313 -----------------------AYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSF 348
                                        E      +       +V +  G +   +PS+
Sbjct: 299 EDLSLAGQLAVRAALAVDNARFYEEAVHAEQRFRSLITATAQAVWVTAPDGTVLEDSPSW 358

Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM-----------LYRSDRTCIAAS 397
             LT     +    +G L  +    +     A +  M           + R D       
Sbjct: 359 RALTGQT-YEQWRGSGWLDAVHPEDRERIGVAWRESMAQRRIYEVEYLIRRPDGRYTPTL 417

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC-- 455
           AR   +     +         +   Q         +E E    R    + ++        
Sbjct: 418 ARAVPVVNADGSIREWIGTHTDLEAQREAEAAARLLESEQSARRHEALRADVSAALAQPG 477

Query: 456 -----------SILEATSDG---IAIINREGIILSTNRAVSK----------LFGYPVED 491
                      +++         + +++RE  +L    +  +            G     
Sbjct: 478 SSLQVLQGACEALVRHLGVARARVWLLDREEQLLHARVSAGQGPTQDEPPPLALGVSPIG 537

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEI-LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
            + +    ++  +        + E+ L  +         +   +   +L+L         
Sbjct: 538 RIAQSRKPWVVHDVRHSPGPEIAELSLPEEKVSFAGYPLVLGEQLIGVLALASTQPFSRD 597

Query: 551 SSCYSLTMHDI----SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
                    +I     E ++ +  L    +   + +     F    SH+++ PL  +  +
Sbjct: 598 IVDVLAAAAEIITQGVERRRAEEALRLHAQELARSNEELQQFAYVASHDLQEPLRMVASY 657

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
           ++++  +  G L +    E+  Y     N +  ++ DLL  S++ +   +L     SL  
Sbjct: 658 TQLLGRRYRGKL-DADADEFIRYAVDGVNRMQRLIQDLLAYSRVGTRGRDLKPCE-SLKP 715

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF-TPSGGQI 725
               A   ++    E    +       +P +LAD   + Q+  N++ NA+ F  P   ++
Sbjct: 716 L-ERAQENLRAMLQETGGAVEVE--GTLPTVLADESQLVQLFQNLVGNALKFHGPVPPRV 772

Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
           ++       E     V+D G+G+     E+    F ++    +    GTG+GL + K +V
Sbjct: 773 VVRAESQGAEGWRFTVKDNGLGIDPQYFERIFVIFQRLHG--REEYPGTGIGLAICKKIV 830

Query: 786 DANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           + + G+  + S P +G+      P    +
Sbjct: 831 ERHGGRIGVESQPGEGSTFWFTLPAAPPA 859


>gi|282897504|ref|ZP_06305505.1| Histidine kinase, HAMP region protein [Raphidiopsis brookii D9]
 gi|281197599|gb|EFA72494.1| Histidine kinase, HAMP region protein [Raphidiopsis brookii D9]
          Length = 647

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 83/258 (32%), Positives = 134/258 (51%), Gaps = 7/258 (2%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           +   K    +L  A K A+  ++ KS FLA  SHE+R PL  II    ++++        
Sbjct: 386 VERLKAWTEELEMAWKEAKSANTVKSQFLANTSHELRNPLNIIINCVRLVRDGLCD--DK 443

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
              +E+    D +   +L I+NDLLDISKIE+GK+++   P+ L + + E I+L  +   
Sbjct: 444 EEELEFLKKADDTAIHLLGIINDLLDISKIEAGKLSVVMIPLELRQLLLEVINLQSVNVE 503

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EV 737
           +K + ++      I  I  D   +KQ+ +N++ NA  FT  G  I IST          V
Sbjct: 504 KKGLQLKCEILEQIIPIKGDRIKLKQVLINVIGNATKFTEEGS-ITISTKTIQQNSKLYV 562

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS- 796
           ++ V DTG+G+   +  K  +PF  +  S   + EGTGLGL +++ +++   GK  + S 
Sbjct: 563 VISVVDTGIGIDPQQQHKLFRPFVMVDGSTTRKFEGTGLGLAISRNLIELMGGKISLESL 622

Query: 797 TPAKGTLIEIIFPLYDTS 814
              +GT ++II PL D S
Sbjct: 623 GLNRGTTVKIILPLIDIS 640


>gi|256004999|ref|ZP_05429971.1| GAF sensor hybrid histidine kinase [Clostridium thermocellum DSM
           2360]
 gi|255991068|gb|EEU01178.1| GAF sensor hybrid histidine kinase [Clostridium thermocellum DSM
           2360]
          Length = 1105

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 73/248 (29%), Positives = 127/248 (51%), Gaps = 3/248 (1%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           + ++   +L    +  EK + ++S+FLA +SHE+RTPL +II  S+++  ++     + +
Sbjct: 516 DLERTTRELRLRTEELEKVNKYRSEFLANMSHELRTPLNSIILLSKMLARKKINEF-DEK 574

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
            +E    I+++G  +L ++ND+LD+SK+ESGKMNL+       E + +   + +  A EK
Sbjct: 575 DMEKIEVINKAGQELLRLINDVLDLSKVESGKMNLNIFTFHSSELMEDLRQMFESSAKEK 634

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI-IISTTHTSNEEVILRV 741
            I      + N   ++ D   + QI  N LSNA  FT  G  I           +VI  V
Sbjct: 635 NISFFVEDSINS-MLVGDRDKISQILRNFLSNAFKFTSEGSVILKAEMDKDRENDVIFSV 693

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            DTG+G+    +    + F Q+  +   +  GTGLGL ++K + D   G+  + S   +G
Sbjct: 694 TDTGIGIPEEHISDIFQEFRQVDGTISRKYGGTGLGLSISKKLADLMKGEIEVRSKIGEG 753

Query: 802 TLIEIIFP 809
           +   +  P
Sbjct: 754 STFFLKLP 761


>gi|329910714|ref|ZP_08275357.1| multi-sensor hybrid histidine kinase [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327546114|gb|EGF31175.1| multi-sensor hybrid histidine kinase [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 1105

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 88/420 (20%), Positives = 167/420 (39%), Gaps = 35/420 (8%)

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG 472
           +   P          +   G        +   R+ +IE++     L         +  E 
Sbjct: 274 VQISPVYFREAEDVALAMAGTARLLATRQRVLRERDIELVTAQR-LSRMGSWNWTLGSE- 331

Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
            ++  +    ++FG                 +   V+   L    +    +  +      
Sbjct: 332 -VVRASEETCRMFGRATIPAFAAQKHAMFAPDVWDVLEQALYRTATTG--ELCDLEIQAR 388

Query: 533 TKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAK------------- 575
                        + +  S         T+ DISE K+ +N+L   +             
Sbjct: 389 RSTGDTFWAHYCCEAIRDSRHRIVGLRGTVQDISERKRAQNELDRYRNDLEALVTSRTIE 448

Query: 576 -----KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
                  AE  +  KSDFLA +SHE+RTPL A+IG + ++         +PR  ++A+ I
Sbjct: 449 LEQARDAAESANRAKSDFLATMSHELRTPLHAVIGLTRLL----GAAPISPRQRDHADNI 504

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
             S   +  +++D+LD S+IE+GK+ L   P SL+  +    +++ +   +K +      
Sbjct: 505 LLSAEALQTMIDDILDFSRIEAGKLQLEHLPFSLNAILRTTATVIGIGLVDKPVEACFDI 564

Query: 691 ANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVI--LRVRDTGV 746
             ++P  +L D   ++Q+ LN+ SNA+ FT +G  I+ +     +   +      RD+G+
Sbjct: 565 DPDMPDLVLGDSLRLQQVLLNLASNAVKFTDAGSIIVQLLCEPRAGGRIALKFIFRDSGI 624

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+   +L+   + F Q   S   R  G+GLGL +++ + D   G   + S P +G+    
Sbjct: 625 GIPAAQLDTIFEQFTQADTSTTRRYGGSGLGLAISRRLADLMRGTISVDSQPGQGSTFCF 684


>gi|94495744|ref|ZP_01302324.1| two-component signal transduction histidine kinase [Sphingomonas
           sp. SKA58]
 gi|94425132|gb|EAT10153.1| two-component signal transduction histidine kinase [Sphingomonas
           sp. SKA58]
          Length = 439

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 78/354 (22%), Positives = 147/354 (41%), Gaps = 24/354 (6%)

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           S+LE  SD + ++  +G I   NRA  +L G                +            
Sbjct: 86  SMLEGISDPLMLV-EKGRIARANRAAMRLLGV--------HIEGEDARIAIRHPAAAERL 136

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575
             +  L + +    +G    ++   +R+       +    + + D S             
Sbjct: 137 ASTAPLAEPIMIELVGLGTRDQRWQMRVAPVGAVATMRRLVHLVDHS------------- 183

Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
                    + DF+A  SHE+RTPL  I+GF E + +   G     R   +   +D    
Sbjct: 184 -GTHAAERMRVDFVANASHELRTPLAGILGFIETLADPELGKDVETRQR-FLKIMDGEAR 241

Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695
            +  +++DL+ +S+IE+ K       V L E V+E + + +    ++   +    A ++ 
Sbjct: 242 RMQRLIDDLISLSRIEAEKYRTPDSAVDLSELVAEVVGVFRSSHGDRGRDVEMEIAPSLA 301

Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755
            +L D   + Q+  N++ N++ +   G  I ++ +  S+    L V D G G+    L +
Sbjct: 302 PVLGDRAQLSQLIHNLIGNSVKYGRPGTPIRVTLSEGSSGMARLCVADEGEGIGPDHLPR 361

Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             + F ++ + +     GTGLGL + K +V+ + G+  I ST  KGT I ++ P
Sbjct: 362 LTERFYRVDSGRSRAMGGTGLGLAIVKHIVERHRGRLDIASTLGKGTSITVLLP 415


>gi|121728605|ref|ZP_01681625.1| histidine protein kinase PhoR [Vibrio cholerae V52]
 gi|147675436|ref|YP_001216210.1| phosphate regulon sensor protein [Vibrio cholerae O395]
 gi|262168826|ref|ZP_06036521.1| phosphate regulon sensor protein phoR [Vibrio cholerae RC27]
 gi|121629113|gb|EAX61557.1| histidine protein kinase PhoR [Vibrio cholerae V52]
 gi|146317319|gb|ABQ21858.1| histidine protein kinase PhoR [Vibrio cholerae O395]
 gi|227012544|gb|ACP08754.1| histidine protein kinase PhoR [Vibrio cholerae O395]
 gi|262022944|gb|EEY41650.1| phosphate regulon sensor protein phoR [Vibrio cholerae RC27]
          Length = 433

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 75/402 (18%), Positives = 152/402 (37%), Gaps = 30/402 (7%)

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDT-RINKRKMEIEVMQLCSILEATSDGIAI 467
           ++           +                   R  ++++   + +  +  E+  D + +
Sbjct: 54  SAWLWDEKRLTPPSGTGNWESLFNGIYRLQQRHRKKRKELTNLIRRFRNGAESLPDAVVV 113

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
              EG I+  NR    L G+   D   +P +  L          ++  +   D    LE 
Sbjct: 114 FRSEGNIVWCNRLAQHLLGFRWPDDAGQPISNLLRTP------DFIKYLKKDDFTDPLEM 167

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
                +       L + I        + + + D+++ KQ +                + +
Sbjct: 168 ----RSPLNSDRMLELRIVPYTEGE-HLMVVRDVTQLKQLEG--------------MRRN 208

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           F A VSHE+RTP+T + G+ E+   +    L  P + +    +    N +  +VN LL +
Sbjct: 209 FFANVSHELRTPMTVLQGYLEM--TEDPDVLAGPMWSKAHGVMTEQLNRMNSLVNQLLTL 266

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707
           SKIE+  M    + V +   +          + E    +      ++ ++LAD   ++  
Sbjct: 267 SKIEASPMVELDQVVDVPAMLEVLEKEAVSLSGEALHKLHFEVDKSL-KVLADEDQLRSA 325

Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
             N++ NA+ +TP G QI +   + + +   L V D G G+    L +  + F ++  ++
Sbjct: 326 ISNLVYNAVKYTPPGAQIDVRW-YRTGKGACLEVEDKGEGIEPQHLHRLTERFYRVDKAR 384

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
                G+GLGL + K  +  +     I+S    G+    + P
Sbjct: 385 SRDTGGSGLGLAIVKHALAHHDTHLDIYSKVGVGSKFSFVLP 426


>gi|258592529|emb|CBE68838.1| Sensor protein (fragment) [NC10 bacterium 'Dutch sediment']
          Length = 683

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 87/370 (23%), Positives = 148/370 (40%), Gaps = 43/370 (11%)

Query: 450 EVMQLCSIL------EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
              QL SI       + ++DGIA+ +    I               +             
Sbjct: 4   SETQLDSIFGQEVSQDQSTDGIAMSDCADAIAYI----ETRLRQQTQQYQVFQLEHEQLM 59

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                              + LE+     T+E +  ++ +                  + 
Sbjct: 60  AAMLGERDA-RLAEQRTYLERLEQEVQDRTREVRDYAVTLE-----------------TA 101

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            K  +      +  +E  +  KS+FLA +SHEIRTP+  IIG +E++ +           
Sbjct: 102 NKALEQA----RAQSEIAARLKSEFLANMSHEIRTPMNGIIGMTELVLDTHLST----EQ 153

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            EY + +  S   +L ++ND+LD SKIE+GK+NL   P SL E +   +  + L A  K 
Sbjct: 154 REYLDLVKSSAESLLGLLNDILDCSKIEAGKLNLEAIPFSLGEILHATLRPLTLQAGRKD 213

Query: 684 ILIRTSFANN-IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI---- 738
           + +      + +  ++ D   ++QI +N++SNAI FT  GG I +        ++     
Sbjct: 214 LTLTWEILPDVLDTLVGDPTRLRQIVVNLVSNAIKFTERGG-IAVRAQAIVEADLRQCVL 272

Query: 739 -LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
              V DTG+G+   +      PF Q+  S   +  GTGLGL +   +V    G+ ++ S 
Sbjct: 273 YCSVTDTGIGIPPEKRHVIFDPFIQVDGSTTRQYGGTGLGLTITAHLVTMMGGRIWVESE 332

Query: 798 PAKGTLIEII 807
           P  G+     
Sbjct: 333 PGLGSTFHFT 342


>gi|291613756|ref|YP_003523913.1| multi-sensor hybrid histidine kinase [Sideroxydans lithotrophicus
           ES-1]
 gi|291583868|gb|ADE11526.1| multi-sensor hybrid histidine kinase [Sideroxydans lithotrophicus
           ES-1]
          Length = 837

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 65/255 (25%), Positives = 123/255 (48%), Gaps = 10/255 (3%)

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + +N+++ A + A + S  KSDFL+ +SHE+RTPL  +IG  +++   R     +    +
Sbjct: 170 KLRNQVNQALEEARRASKAKSDFLSNMSHEMRTPLNGVIGAGDLLLGTRL----DDEQKD 225

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
               + +S +L+L +++++LD+SKIESGK+        L + V+  + +      +K I 
Sbjct: 226 LVATLKKSAHLLLKLIDNILDLSKIESGKLVSEKTDFDLHKLVNSTLEMFLPQVEKKGIS 285

Query: 686 IRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV----ILR 740
           +   F       +  D   ++Q+ +N++ NAI FT  G  + +        ++       
Sbjct: 286 LSVRFTPETCFMLQGDPLHLQQVLINLVGNAIKFTSKGS-VELRIATLQQGDLQTLLRFE 344

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V DTG+G++     +  + F Q   +      GTGLG  ++K +V+   GK  + S    
Sbjct: 345 VIDTGIGISPQAQGRIFESFTQADQNITRIYGGTGLGTTISKQLVELMGGKMGVQSEQGI 404

Query: 801 GTLIEIIFPLYDTSH 815
           G++     P +  S 
Sbjct: 405 GSIFWFEIPFFKQSA 419


>gi|149280707|ref|ZP_01886817.1| sensor histidine kinase/response regulator fusion protein
           [Pedobacter sp. BAL39]
 gi|149228531|gb|EDM33940.1| sensor histidine kinase/response regulator fusion protein
           [Pedobacter sp. BAL39]
          Length = 1160

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 89/259 (34%), Positives = 133/259 (51%), Gaps = 16/259 (6%)

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           Q +  +S   K  E  S +KS+FLA +SHE+RTPL +I+  + ++K  R   L N   I+
Sbjct: 470 QAREAISLKAKELEVSSKYKSEFLANMSHELRTPLNSILILARILKENRPENL-NEDQIK 528

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           YA  I  +GN +L ++ND+LD+SKIESGK++L  EPV  +       SL    A  K I 
Sbjct: 529 YAGVIHNAGNDLLTLINDILDLSKIESGKVDLILEPVKPESVAYSMESLFSELAKSKHIE 588

Query: 686 IRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV------- 737
             T   NN+P  I+ D   V+Q+A N+LSNA  FTP  G+I  S    +   +       
Sbjct: 589 FSTLLGNNLPDSIITDQSRVEQVAKNLLSNAFKFTPEQGKITFSIQRAAAGTLFYSDQLK 648

Query: 738 -------ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
                   + V DTG+G+   + +   + F Q   S   +  GTGLGL ++K + +   G
Sbjct: 649 DTSEDILAIAVTDTGIGIAESKQKLIFEAFQQEDGSTSRKYGGTGLGLSISKELANIMGG 708

Query: 791 KFYIFSTPAKGTLIEIIFP 809
           +  + S P +G+      P
Sbjct: 709 EIQLKSKPGEGSTFTFFIP 727


>gi|153947703|ref|YP_001401134.1| sensor histidine kinase/response regulator [Yersinia
           pseudotuberculosis IP 31758]
 gi|152959198|gb|ABS46659.1| sensor histidine kinase/response regulator [Yersinia
           pseudotuberculosis IP 31758]
          Length = 1286

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 89/378 (23%), Positives = 169/378 (44%), Gaps = 16/378 (4%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG---YPVEDILRKPF 497
           R   + +   ++Q  SI+ A    + I    G +   N   + +     Y + +   +P 
Sbjct: 548 RRQAKLLHARLLQQESIINALPFAVFIRTASGELAVYNSHFADVHSDKLYDMLNQTHEPA 607

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF-SSCYSL 556
              +       ++ Y   +L     Q ++          ++  + + I  L         
Sbjct: 608 HWPMTSPLDREIDKYCRSVLLNRKPQLVDLSVEIK---GEIRDIFLWIIPLNNAEQGLLG 664

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
              DIS+ K  + +L  A+  AE  +  KS FLA +SHE+RTP+ AI+G  E+       
Sbjct: 665 GWLDISQRKTVERQLEAARVEAESANRTKSTFLATISHELRTPMYAIMGLLELEIRS--- 721

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
               P   +    + +S   ++ +++D++D +KIE+G++++H   V   + +    +L Q
Sbjct: 722 --NRPVEKDTLVTVSKSAQSLMLLLDDIIDSAKIEAGQLSIHPTAVDFHQEMERMFTLYQ 779

Query: 677 LYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSN 734
             ANE+ +       ++IP + +AD+  V+Q+  N+L NA+ FT  G   + I+   +  
Sbjct: 780 PIANERGLRFSGWLDDHIPPLLMADMLRVRQVMGNLLGNALKFTEQGSVSVDITWEPSDE 839

Query: 735 EEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
           +  +  + + DTG+G++        +PF Q    +  R  G+GLGL +   ++    GK 
Sbjct: 840 QHGVMNIDITDTGIGISPAAQATLFQPFSQANEGKSPRFGGSGLGLWICHQLIHKMGGKI 899

Query: 793 YIFSTPAKGTLIEIIFPL 810
            + S   KGT + I  PL
Sbjct: 900 ALESQLGKGTSLLITLPL 917


>gi|269104721|ref|ZP_06157417.1| sensor protein LuxQ [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268161361|gb|EEZ39858.1| sensor protein LuxQ [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 570

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 84/257 (32%), Positives = 138/257 (53%), Gaps = 7/257 (2%)

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            K   N    A+K AE       DFLA ++HE+RTPL  ++G +E++ +           
Sbjct: 191 RKISMNNAISAQKRAENSERSTRDFLAMINHELRTPLNGLLGAAELLADTSLSS----EQ 246

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            +  + ++ SG L+  I+NDLLD SKI +G + L  +P +  + ++    +++  A EK+
Sbjct: 247 KKLLDTLNNSGELLRAIINDLLDYSKISAGMLELIIKPFNPHQIINNLADIMRYQAQEKQ 306

Query: 684 ILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           +L+     N +P  +L D   +KQI +N+++NAI FT  G  I+ +T      ++I +V+
Sbjct: 307 LLLTLVIDNTVPNCLLGDEDRIKQIFVNLINNAIKFTNRGSIILNTTWCED--KLIFQVK 364

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG+G+T  +  K  KPF Q+  S Q   EGTGLGL + K + +   G+  + S P +G+
Sbjct: 365 DTGIGITEGQQLKLFKPFSQVDISSQRIHEGTGLGLAICKQLCELMSGEIKLISIPEQGS 424

Query: 803 LIEIIFPLYDTSHPHDC 819
              +I PL     P D 
Sbjct: 425 TFTVILPLKLCDTPLDI 441


>gi|320353304|ref|YP_004194643.1| PAS/PAC sensor signal transduction histidine kinase [Desulfobulbus
           propionicus DSM 2032]
 gi|320121806|gb|ADW17352.1| PAS/PAC sensor signal transduction histidine kinase [Desulfobulbus
           propionicus DSM 2032]
          Length = 570

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 95/579 (16%), Positives = 202/579 (34%), Gaps = 66/579 (11%)

Query: 284 TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLF 342
                   L +  +   E L         A  + G     +  D  P+ +  V   G + 
Sbjct: 10  AASDEADRLLDELERQNEELRLA-----RAEVEAGLRKYYDLYDFAPVGYCTVSRDGLVL 64

Query: 343 YANPSFLLLTKYKSVDDI----------EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
            +N +  LL     +  +          E    L+  L+     ++ A   + +   +  
Sbjct: 65  ESNLAGALLLGVDRLRVLRCPLAGFVVREGRNDLARFLERVFSGEHKATGELRVPDGEGG 124

Query: 393 CIAASARLHTIQWN-RENSLAMTFIPFEKANQFPENM------PQNGIEPEDVDTRINKR 445
                    + +    E    +  +   ++ Q    +       +  ++           
Sbjct: 125 VRHLYLEGGSFETPLGEQQCRIAMMDITQSRQTSAELEHYRYHLEELVQQRTSQLEEANL 184

Query: 446 KMEIEVMQLCSILEAT-SDGIAIIN---REGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
           ++  +   L SI +A  S G+ + +    +  I   +    KLFG+  +++L    ++  
Sbjct: 185 RLREQTENLTSIYQAMDSIGLIVCSLEENDARIDIFSAGAEKLFGHRQDEVLGASVSLIY 244

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SLT 557
                +++   +  +   +  Q+ +   +   K        I                  
Sbjct: 245 PPAANAMVADMVRRLRQGEAMQSFDSTLV--RKSGDCFPAVISFHPFARQDGLFTKAVGG 302

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFL--------------------ARVSHEIR 597
             DISE    +N+L       E+    ++  L                    A ++HE  
Sbjct: 303 CRDISELMYIQNQLQAMNDELERRVEQRTRELQETQRQYLHAEKLSAIGKLSASIAHEFN 362

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
            PL  I+   + +K +    +                + + +++  L D ++  S +   
Sbjct: 363 NPLQGILSILKGLKKR---AILEEEDRVLLEAAIAESDRIKELIRQLQDFNRPSSDR--- 416

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
               V + ++++  + L       KRI +R  +A  +P ILA    +KQ+ LN+L+NA  
Sbjct: 417 -KAVVDVHQSLNSVLLLHTSDFKGKRIELRLDYAERLPHILAVPDQIKQVFLNLLANAAD 475

Query: 718 FT-PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
              PSGG I ++T    +  V + V D G+G+   +++   +PF           +GTGL
Sbjct: 476 ACRPSGGVITVTTRLVDD-RVAVTVEDNGIGIVPEDMDLIFQPFYTTKP----EVKGTGL 530

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
           GL ++  +V  + G+  + S P +G    ++ P+ +  H
Sbjct: 531 GLSVSYGIVKDHQGEIRVESRPGEGARFTVLLPVGNRYH 569



 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 70/173 (40%), Gaps = 7/173 (4%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
              A     +   + +E ++ + R+ + ++E  + +   + +    G   ++R+G++L +
Sbjct: 7   IGPAASDEADRLLDELERQNEELRLARAEVEAGLRKYYDLYDFAPVGYCTVSRDGLVLES 66

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
           N A + L G     +LR P   F+ +   + +  +L  + S + + T          E  
Sbjct: 67  NLAGALLLGVDRLRVLRCPLAGFVVREGRNDLARFLERVFSGEHKATG--ELRVPDGEGG 124

Query: 538 LLSLRIIIK----KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
           +  L +        L    C    M DI++ +Q   +L H +   E+    ++
Sbjct: 125 VRHLYLEGGSFETPLGEQQCRIAMM-DITQSRQTSAELEHYRYHLEELVQQRT 176



 Score = 41.6 bits (96), Expect = 0.57,   Method: Composition-based stats.
 Identities = 28/265 (10%), Positives = 71/265 (26%), Gaps = 13/265 (4%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI-LHIDPNNHIGDLLKRQNTWYGKTTLW 150
              +   S    K  G+   +++G  +  +     +    + +  L + +      +TL 
Sbjct: 214 DARIDIFSAGAEKLFGHRQDEVLGASVSLIYPPAANAMVADMVRRLRQGEAMQSFDSTLV 273

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRV--------DNDPRALGKRLDK 202
              G     P  ++  P   ++  F+  +  G                     L +R+++
Sbjct: 274 RKSGDCF--PAVISFHPFARQDGLFT--KAVGGCRDISELMYIQNQLQAMNDELERRVEQ 329

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
           +   L E ++ +   EK         S         +          K  +L+ E   LL
Sbjct: 330 RTRELQETQRQYLHAEKLSAIGKLSASIAHEFNNPLQGILSILKGLKKRAILEEEDRVLL 389

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
            +  +     ++      +          + +  +     L            +   +  
Sbjct: 390 EAAIAESDRIKELIRQLQDFNRPSSDRKAVVDVHQSLNSVLLLHTSDFKGKRIELRLDYA 449

Query: 323 PETVDKCPIPFFVYSHGNLFYANPS 347
                   +P  +        AN +
Sbjct: 450 ERLPHILAVPDQIKQVFLNLLANAA 474


>gi|148269219|ref|YP_001243679.1| histidine kinase [Thermotoga petrophila RKU-1]
 gi|147734763|gb|ABQ46103.1| histidine kinase [Thermotoga petrophila RKU-1]
          Length = 493

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 78/410 (19%), Positives = 166/410 (40%), Gaps = 37/410 (9%)

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
           +      + +   P  +  +  + +         ++     R++E     +  IL    +
Sbjct: 105 RMFGSLIVLLNHQPSMEETEIFKVLSFLSAI--VLENIKLYRELEETYNYVNVILNGLPE 162

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
           GI +    G I   N    +                               E +SL  ++
Sbjct: 163 GIFVY-SSGEIKFQNEKFKE---------------ENFPDEVLKKAISLSEEAISLRTQR 206

Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
             E I       E+  S+  I   L         + +++E K+ +          ++   
Sbjct: 207 VGEVI-----SGEEFFSITSIPLVLGSEVQALTIVENVTESKELER--------LKRIDR 253

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
            K++F+A +SHE+RTPLTAI  ++E I N     L      E+   I    + + +++N+
Sbjct: 254 MKTEFIANISHELRTPLTAIKAYAETIYNT-LEELDLGTLKEFLEVIMDQSSHLENLLNE 312

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLR 702
           LLD S++E   + ++ E + L   +  A++ ++ +A+   + +        P     D  
Sbjct: 313 LLDFSRLERKSLQINREKIDLCGLIESAVNAIKEFASSHNVNVLFESNVPCPVEAYVDPT 372

Query: 703 SVKQIALNILSNAIHFTP---SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKP 759
            ++Q+ LN+L+N + ++        + +      +  V++ V D G+G+ ++  ++  + 
Sbjct: 373 RIRQVLLNLLNNGVKYSKKDVPDKYVRVILD-EKDGGVLITVEDNGIGIPDHAKDRIFEQ 431

Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           F ++ +S      GTGLGL + K +V+ + GK ++ S   KG+   +  P
Sbjct: 432 FYRVDSSLTYEVPGTGLGLTITKEIVELHGGKIWVESEVGKGSRFFVWIP 481


>gi|300870080|ref|YP_003784951.1| putative phosphate regulon sensor protein [Brachyspira pilosicoli
           95/1000]
 gi|300687779|gb|ADK30450.1| putative phosphate regulon sensor protein [Brachyspira pilosicoli
           95/1000]
          Length = 588

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 83/374 (22%), Positives = 162/374 (43%), Gaps = 35/374 (9%)

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
           + E  +L  +LE  + GI  +N++  I   N+           DI  +      E     
Sbjct: 244 QTEKEKLNYVLENIAQGIIAVNKKKEIFFINQFAIDFL-----DIGERAVNNLNEIIKDE 298

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT--MHDISEWK 565
            +   +   + L      +        +E  + + I I  +  +   S      D+++ +
Sbjct: 299 NVIKKIDNAIELGRFSKFD-------SKEHNMDIEITIIPIRNNENISALIKFEDVTDIR 351

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + + +              K DF    SHE++TPLT+I+G+SE++     G   N     
Sbjct: 352 KLEIE--------------KQDFFINASHELKTPLTSILGYSELLLATGGGKNLND---- 393

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           + N I+     + ++V D+L +S+IE+       E + + E +       +L A ++ I 
Sbjct: 394 FLNRINTEALRMKELVMDMLTLSRIEANWQETIDEKMDIKEIILNVYDSNKLKAQKRDIT 453

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           I  +  +    I+A+   + ++  N++ NAI +T  GG + I  + T  ++ I  V+DTG
Sbjct: 454 IDLNIESA--FIMANKEKITEVINNLVDNAIKYTDDGGNVKIILS-TDKDKAIFTVKDTG 510

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
            G+    L +  + F ++ N++ ++  GTGLGL + K + +      ++ S    GT I 
Sbjct: 511 CGIAPQYLNRIFERFFRVKNNKYLKVNGTGLGLTIVKNICNNYNADIHVKSEENVGTEIS 570

Query: 806 IIFPLYDTSHPHDC 819
           ++F LYD     + 
Sbjct: 571 VVFKLYDEEKEKNI 584


>gi|83594057|ref|YP_427809.1| multi-sensor hybrid histidine kinase [Rhodospirillum rubrum ATCC
           11170]
 gi|83576971|gb|ABC23522.1| multi-sensor hybrid histidine kinase [Rhodospirillum rubrum ATCC
           11170]
          Length = 834

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 113/659 (17%), Positives = 212/659 (32%), Gaps = 51/659 (7%)

Query: 182 GIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS 241
            I    R   D  A  +   +  S          +       +       P   M  ++S
Sbjct: 76  AIDRSGRRLADSEARIRDFAQSSSDWFWETGPTLAYTYASPRLLDLSGNDPAKIMGQRLS 135

Query: 242 SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301
            L              + P      +            L         G           
Sbjct: 136 DLCPDPRSDAAERIATRRPFRDLALTVDLGDGYRRHFRLAGRPVLDDRGVFAGYRG---A 192

Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDI 360
            +      + SA  +   +L  + VD     F ++   G L   N S+       +   +
Sbjct: 193 GVDVTGEIAASARSEALRDLMFDAVDSISEGFVLFDPEGRLVVVNDSYRYAYPQLADHLV 252

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF-IPFE 419
                   L  A +  D  A K +              RLH  +    N   ++    + 
Sbjct: 253 PGITFEELLKVAARGRDLGAEKDLR--------GWIDERLHRHREGGTNDCKLSDGRWYR 304

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
                        +  +  + +    ++  +   L + ++ T   +A+++     L  +R
Sbjct: 305 IGEHETRGGGLVKVLMDITEMKTGADRLAQQTALLRTFVDETPVAVAMVDATLRYLRVSR 364

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
                FG    DI+ +   V +       +N Y   +        +E+  +      + L
Sbjct: 365 RWRTEFGLEDRDIIGQRHDVVMPSLPDDWLNDYEQALSG----VAIEREEVSIDLGGRTL 420

Query: 540 SLRIIIKK----LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
            LR                 +T  +I+E KQ +  L  ++K+              ++HE
Sbjct: 421 WLRRREYPWFLEDGTVGGLMMTAENITERKQAELALLQSQKM-----EAVGQLAGGIAHE 475

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
               LT+I GF+ + +     P    R       + RS +    + + LL+ S+  + + 
Sbjct: 476 FNNMLTSIGGFARMAQRT---PERLERVTMCLAEVVRSADRAAGLTSQLLNFSRRTTEEE 532

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715
            L    + L   + E  + ++     +RI +    A     +LA+   + Q  +N+  NA
Sbjct: 533 TLR---IPLGALLDELRTFLKPVL-GERIALDLRCAVESLFVLANRDRLHQALVNLCINA 588

Query: 716 IHFTPSGGQIIISTTHT--------------SNEEVILRVRDTGVGMTNYELEKAMKPFG 761
                 GG +II T H               + +  +LRV D+G G+   +L +  +PF 
Sbjct: 589 RDAMAEGGTVIIETGHGVPPERLRCRHPHLGAGQHAVLRVIDSGCGIPEEDLPRVFEPFF 648

Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820
                   +G+GTGLGLP+  AM +   G   + S   +GT + +  PL D +     I
Sbjct: 649 TTKA----QGKGTGLGLPMVYAMAEQANGAVELDSIVGRGTTVTLYLPLADGAAAAPTI 703



 Score = 94.7 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 38/383 (9%), Positives = 97/383 (25%), Gaps = 32/383 (8%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK 146
           W           S  L    GN   K++G RL D+      DP +   + +  +  +   
Sbjct: 103 WETGPTLAYTYASPRLLDLSGNDPAKIMGQRLSDLCP----DPRSDAAERIATRRPFRDL 158

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                + G        LA  P+      F+G+RG G+      +    A  + L      
Sbjct: 159 ALTVDL-GDGYRRHFRLAGRPVLDDRGVFAGYRGAGV--DVTGEIAASARSEALRDLMFD 215

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
             +       +   +  +                  L      ++ +    +   L +E+
Sbjct: 216 AVDSISEGFVLFDPEGRLVVVNDSY-RYAYPQLADHLVPGITFEELLKVAARGRDLGAEK 274

Query: 267 SSLPEQEDFHTINLN----------QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
                 ++    +                +      +         +      + +    
Sbjct: 275 DLRGWIDERLHRHREGGTNDCKLSDGRWYRIGEHETRG-GGLVKVLMDITEMKTGADRLA 333

Query: 317 EGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
           +   L    VD+ P+    V +       +  +      +  D I     +      P L
Sbjct: 334 QQTALLRTFVDETPVAVAMVDATLRYLRVSRRWRTEFGLEDRDIIGQRHDV----VMPSL 389

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWN-RENSLAMTFIPFEKANQFPENMPQNGIE 434
            D+       L   ++     +     +  +    +L +    +    +           
Sbjct: 390 PDD------WLNDYEQALSGVAIEREEVSIDLGGRTLWLRRREYPWFLEDGTVGGLMMTA 443

Query: 435 PEDVDTRINKRKMEIEVMQLCSI 457
               + +  +  +     ++ ++
Sbjct: 444 ENITERKQAELALLQS-QKMEAV 465


>gi|45441480|ref|NP_993019.1| putative histidine protein kinase sensor [Yersinia pestis biovar
           Microtus str. 91001]
 gi|45436341|gb|AAS61896.1| putative Histidine protein kinase sensor [Yersinia pestis biovar
           Microtus str. 91001]
          Length = 1289

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 89/378 (23%), Positives = 168/378 (44%), Gaps = 16/378 (4%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG---YPVEDILRKPF 497
           R   + +   ++Q  SI+ A    + I    G +   N   + +     Y + +   +P 
Sbjct: 595 RRQAKLLHARLLQQESIINALPFAVFIRTASGELAVYNSHFADVHSDKLYDMLNQTHEPA 654

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF-SSCYSL 556
              +       ++ Y   +L     Q ++           +  + + I  L         
Sbjct: 655 HWPMTSPLDREIDKYCRSVLLNRKPQLVDLSVEIK---GDIRDIFLWIIPLNNAEQGVLG 711

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
              DIS+ K  + +L  A+  AE  +  KS FLA +SHE+RTP+ AI+G  E+       
Sbjct: 712 GWLDISQRKTVERQLEAARVEAESANRTKSTFLATISHELRTPMYAIMGLLELEIRS--- 768

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
               P   +    + +S   ++ +++D++D +KIE+G++++H   V   + +    +L Q
Sbjct: 769 --NRPVEKDTLVTVSKSAQSLMLLLDDIIDSAKIEAGQLSIHPTAVDFHQEMERMFTLYQ 826

Query: 677 LYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSN 734
             ANE+ +       ++IP + +AD+  V+Q+  N+L NA+ FT  G   + I+   +  
Sbjct: 827 PIANERGLRFSGWLDDHIPPLLMADMLRVRQVMGNLLGNALKFTEQGSVSVDITWEPSDE 886

Query: 735 EEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
           +  +  + + DTG+G++        +PF Q    +  R  G+GLGL +   ++    GK 
Sbjct: 887 QHGVMNIDITDTGIGISPAAQATLFQPFSQANEGKSPRFGGSGLGLWICHQLIHKMGGKI 946

Query: 793 YIFSTPAKGTLIEIIFPL 810
            + S   KGT + I  PL
Sbjct: 947 ALESQLGKGTSLLITLPL 964


>gi|317052639|ref|YP_004113755.1| PAS sensor protein [Desulfurispirillum indicum S5]
 gi|316947723|gb|ADU67199.1| PAS sensor protein [Desulfurispirillum indicum S5]
          Length = 970

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 82/379 (21%), Positives = 156/379 (41%), Gaps = 26/379 (6%)

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINRE---GIILSTNRAVSKLFGYPVED--ILR 494
              N+  +  +  +    L  +  GI I + +   G +   +  +  L+G    +    +
Sbjct: 348 QAFNRLLLSRDEQRQRLFLATSGVGIGIWDYDMSAGTMT-WDEQMFALYGATPGEEADAQ 406

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC- 553
           + +   +  +    +N  L   L  +   + E   +      + +    ++ +       
Sbjct: 407 RIWESRVHPDDLESVNQLLHSALQGESFFSAEFRIVLPDGNIRWIKANAVVLRADGDGGE 466

Query: 554 ---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
                 T  DISE K+ +                KS F++ VSHE+RTPLT+I G   +I
Sbjct: 467 PLRVIGTNWDISEQKRVE--------------LMKSQFVSTVSHELRTPLTSINGSLGLI 512

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
                G L + +  +  +   ++   +  ++NDLLD+ KI +GKM        L   V +
Sbjct: 513 AGGAVGELPS-QARQLVDIAYKNSQRLGYLINDLLDMEKIAAGKMRFDMILQELMPIVEQ 571

Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
           A+   + Y  +  +       ++   +  D + + Q+  N+LSNA  F+ S  ++ I+  
Sbjct: 572 AMEANEAYGRQFNVTFALVERDDSMLVRVDAQRLMQVLSNLLSNAAKFSASAERVEIAV- 630

Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
              N +V + VRD G G++     +    F Q  +S   +  GTGLGL +AK +V+   G
Sbjct: 631 MAQNNQVRVEVRDQGPGISPELQARLFTKFTQADSSDTRQKGGTGLGLAIAKELVERMGG 690

Query: 791 KFYIFSTPAKGTLIEIIFP 809
              + S   +G++     P
Sbjct: 691 TIGVHSEVGRGSVFFFELP 709


>gi|262384058|ref|ZP_06077194.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
 gi|262294956|gb|EEY82888.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
          Length = 768

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 81/382 (21%), Positives = 152/382 (39%), Gaps = 33/382 (8%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTN------RAVSK-----LFGYPVEDI 492
            R+ +    +   +L+A++      +    I+  N      R+        +F    ++ 
Sbjct: 398 ARQAQDLNQKYQLVLKASNMMTWTWDVRAEIIECNNVYLTQRSARDKGVNGIFKMSPDE- 456

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK-----K 547
               F   +  +    +   +  + S + +   E+I       E  + + I         
Sbjct: 457 ----FYSGVYPDDLDRLRDKMEALASGEGQPVDEEIRYLDDTGENYIWIEIYAITGKTDP 512

Query: 548 LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
           +            I + K  + +L   K   E+ +  KS FLA +SHEIRTPL AI+GFS
Sbjct: 513 VGKPIYLIGGTALIHQRKLMEQELRD-KAKVEESNRLKSAFLANMSHEIRTPLNAIVGFS 571

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
            ++         +    E+   I+ +  L+L +VND+LD+SKIE+G+M+  +   ++   
Sbjct: 572 NLLAQTN----PSEETKEFCEIIETNNELLLQLVNDILDLSKIEAGQMDFIYSEFNVSTL 627

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727
                   Q    +  + +          I ++   + Q+  N L+NA  FT  G  I +
Sbjct: 628 FRSLYQTFQSRVKD-GVTLYCEIPEQDCVIYSEKNRLTQVITNFLTNACKFTFQGS-IRM 685

Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
                 +  +   V+DTG G+    L    + F +  +      +GTGLGL + + +++ 
Sbjct: 686 GYKEREDG-LYFYVKDTGKGIERKNLPHVFERFAKFDSFI----QGTGLGLSICQTILEN 740

Query: 788 NMGKFYIFSTPAKGTLIEIIFP 809
             GK  + S   KG+      P
Sbjct: 741 LHGKIGVDSEEGKGSTFWFTIP 762


>gi|261252150|ref|ZP_05944723.1| phosphate regulon sensor protein phoR [Vibrio orientalis CIP
           102891]
 gi|260935541|gb|EEX91530.1| phosphate regulon sensor protein phoR [Vibrio orientalis CIP
           102891]
          Length = 402

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 79/414 (19%), Positives = 160/414 (38%), Gaps = 36/414 (8%)

Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
             RL T  W+ +            +         NGI       R  ++++   + +  +
Sbjct: 20  QMRLSTWLWDEKR-------LTPPSGSGNWESLFNGIYRLQQRQRKKRKELTNLIRRFRN 72

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
             E+  D + +   EG I+  N+    L G+   D   +P +  +         +     
Sbjct: 73  GAESLPDAVVVFRSEGNIVWCNKLAQHLLGFRWPDDSGQPISNLIRTPDFIKYLNKQDFS 132

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKK 576
             L++R  L    +          L + I        + + + D+S+ KQ +        
Sbjct: 133 EPLEMRSPLNVERM----------LELRIVPYTEGE-HLMVVRDVSQLKQLEG------- 174

Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
                   + +F A VSHE+RTP+T + G+ E+   +    +  P + +    +    N 
Sbjct: 175 -------MRRNFFANVSHELRTPMTVLQGYLEM--TEDPDMVVGPMWTKAHGVMTEQLNR 225

Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696
           +  +VN LL +SKIE+  M+   + V++   +          + +    +     +N+ R
Sbjct: 226 MNSLVNQLLTLSKIEAAPMHELEDVVNVPAMLEVLEKEAASLSGDLGHKLSFDVDSNL-R 284

Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKA 756
           +L D   ++    N++ NA+ +TP+G  I +    ++     L V D+G G+    L + 
Sbjct: 285 VLGDDDQLRSAISNLVYNAVKYTPAGADIKVRWYQSAQG-AHLEVEDSGDGIEPQHLHRL 343

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            + F ++  ++     G+GLGL + K  +  +     I S    G+      P+
Sbjct: 344 TERFYRVDKARSRDTGGSGLGLAIVKHALTHHDSHLEISSEVGVGSKFAFTLPV 397


>gi|163754675|ref|ZP_02161797.1| multi-sensor signal transduction histidine kinase [Kordia algicida
           OT-1]
 gi|161325616|gb|EDP96943.1| multi-sensor signal transduction histidine kinase [Kordia algicida
           OT-1]
          Length = 660

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 89/552 (16%), Positives = 186/552 (33%), Gaps = 43/552 (7%)

Query: 274 DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD----EGENLTPETVDKC 329
             +T N      +     + + +++           +    FD    E EN     +   
Sbjct: 132 RVYTKNKGVRWVQINASLIFDANEKPIAAQGIIRDITDQKKFDDKLIESENRLSTLILNL 191

Query: 330 PIPFFVYSHGN-LFYANPSFLLLTKYK-SVDDIEIAGGLST------LLDAPKLSDNNAI 381
                +      +   N  F  + K   S + ++     +       L   PKL  N   
Sbjct: 192 DSAVLLEDENRNIVLTNAKFCEIFKIPVSPELLKGQDCSNAAEESKILFKDPKLFINTIN 251

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
           + +   +              +       L + FIP     +            +    R
Sbjct: 252 RILHEKKQ--------VIGTELTMADGTILELDFIPIL---KGGTYKGHLWTYRDISLNR 300

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
              + +E +  +  SI+   + G+  ++ +  IL  N++  ++ GY  ++++ +      
Sbjct: 301 KYSKSLEAQKEKYSSIIANMNLGLVEVDNDDKILMVNQSFCEMSGYDEDELIGQIGGKLF 360

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK----LPFSSCYSLT 557
                  +     +        +         K+    +  I                  
Sbjct: 361 PIAEDENIIERENKKRLNGTSNSY--EINVKDKQGTPKNWLISGAPNYNLDGEVIGSIGI 418

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
             DI+E K  + +     +  EK ++   ++   VSH++++PL +I      IK    G 
Sbjct: 419 HLDITELKNLEKQKEKILEKLEKSNNELYEYAHIVSHDLKSPLRSINALVSWIKMDNEGK 478

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
             +P        I+ +  ++ ++++++L+ S   +G      + V L+  + +   L +L
Sbjct: 479 FDDPTLQN-LKLIEDTLEIMENLISNILEYS--SAGSETAASKEVDLNTTMED---LHRL 532

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS-GGQIIISTTHTSNEE 736
               + I I  +    +P +  D    +Q+  N++SNAI F     G + I         
Sbjct: 533 LFVPEHISI--NILKKLPVVKGDPTKFQQLFQNLMSNAIKFCDKDNGIVEIDV-VEEPSF 589

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
               VRD G+G+     ++  K F     S     E TG+GL + K +VD   G  ++ S
Sbjct: 590 YQFSVRDNGIGIDKKFHDRIFKIFH----SLNKSKESTGIGLSIVKKIVDLYEGNIWLES 645

Query: 797 TPAKGTLIEIIF 808
              +GT      
Sbjct: 646 ELGEGTTFFFTI 657



 Score = 78.1 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 39/321 (12%), Positives = 93/321 (28%), Gaps = 20/321 (6%)

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
           +  +   +             +     ++             +  L A   E  +     
Sbjct: 3   QEQIDILQRALKREKEARRAAEKILEDKSRELYILSEELKVTNSKLEASVSEKTSQLAGV 62

Query: 326 VDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
            +     + V    GN+   N +   L  Y  ++  E     S +          +   +
Sbjct: 63  FENIIDAYLVMDLGGNVLKMNDAACELFGYNILE--ETLNVTSLIYKEDVAYAFESFSEL 120

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
           +           S     +    +    +        +   + +   GI  +  D +   
Sbjct: 121 I------EKGRFSNYTARVYTKNKGVRWVQINASLIFDANEKPIAAQGIIRDITDQKKFD 174

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP--VEDILRKPFTVFLE 502
            K+     +L +++      + + +    I+ TN    ++F  P   E +  +  +   E
Sbjct: 175 DKLIESENRLSTLILNLDSAVLLEDENRNIVLTNAKFCEIFKIPVSPELLKGQDCSNAAE 234

Query: 503 QN-----TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL-RIIIKKLPFSSCYSL 556
           ++      P +  + +  IL  + +Q +         +  +L L  I I K      +  
Sbjct: 235 ESKILFKDPKLFINTINRIL-HEKKQVIGTELT--MADGTILELDFIPILKGGTYKGHLW 291

Query: 557 TMHDISEWKQEKNKLSHAKKI 577
           T  DIS  ++    L   K+ 
Sbjct: 292 TYRDISLNRKYSKSLEAQKEK 312



 Score = 71.2 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 44/381 (11%), Positives = 107/381 (28%), Gaps = 27/381 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYA-FKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGK 146
           +D  G + ++++   +  G     + +   +  +     +        +L+++   +   
Sbjct: 73  MDLGGNVLKMNDAACELFGYNILEETL--NVTSLIYKEDVAYAFESFSELIEKGR-FSNY 129

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
           T     +   +   + + A  I+  N +    +G  I+                + + S 
Sbjct: 130 TARVYTKNKGVR-WVQINASLIFDANEKPIAAQG--IIRDITDQKKFDDKLIESENRLST 186

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
           L         +E E  +I    +       + +  ++    +     ++     K P L 
Sbjct: 187 LILNLDSAVLLEDENRNIVLTNAKFCEIFKIPVSPELLKGQDCSNAAEESKILFKDPKLF 246

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTL--------QNNSKESFEYLSHRNHPSLSAYF 315
               +    E    I             L               + Y     +   S   
Sbjct: 247 INTINRILHEKKQVIGTELTMADGTILELDFIPILKGGTYKGHLWTYRDISLNRKYSKSL 306

Query: 316 DEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
           +  +      +    +    V +   +   N SF  ++ Y   + I   GG   L   P 
Sbjct: 307 EAQKEKYSSIIANMNLGLVEVDNDDKILMVNQSFCEMSGYDEDELIGQIGG--KLF--PI 362

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
             D N I+     R + T  +    +            +        N   E +   GI 
Sbjct: 363 AEDENIIERENKKRLNGTSNSYEINV--KDKQGTPKNWL-ISGAPNYNLDGEVIGSIGIH 419

Query: 435 PEDVDTRINKRKMEIEVMQLC 455
            +  + +  +++ E  + +L 
Sbjct: 420 LDITELKNLEKQKEKILEKLE 440



 Score = 44.2 bits (103), Expect = 0.087,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 50/127 (39%), Gaps = 9/127 (7%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGM---RLCDVSDILHIDPNNHIGDLLKRQNTWY 144
            +D    +  +++   +  G    ++IG    +L  +++  +I    +   L     +  
Sbjct: 326 EVDNDDKILMVNQSFCEMSGYDEDELIGQIGGKLFPIAEDENIIERENKKRL--NGTSNS 383

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF--GIVHVNRVDNDPRALGKRLDK 202
            +  +   +GT     I  +  P Y+ + E  G  G    I  +  ++     + ++L+K
Sbjct: 384 YEINVKDKQGTPKNWLI--SGAPNYNLDGEVIGSIGIHLDITELKNLEKQKEKILEKLEK 441

Query: 203 KFSHLHE 209
             + L+E
Sbjct: 442 SNNELYE 448


>gi|71909646|ref|YP_287233.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase, HAMP region:histidine
           kinase A, N-terminal [Dechloromonas aromatica RCB]
 gi|71849267|gb|AAZ48763.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase, HAMP region:Histidine
           kinase A, N-terminal [Dechloromonas aromatica RCB]
          Length = 659

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 86/280 (30%), Positives = 137/280 (48%), Gaps = 11/280 (3%)

Query: 545 IKKLPFSSCYSLTMHDISEWKQEK--NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
           + ++           D  E   ++    LS AK+ AE  S  KS FL+ +SHE+RTP+ A
Sbjct: 230 LAEIAERDRQLADQRDHLEDTVQERTQALSVAKEAAEAASRAKSTFLSNMSHELRTPMNA 289

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           IIG + ++K Q   PL     ++    ID + N +L ++ND+LD+SKI++ +M L     
Sbjct: 290 IIGMTYMLKRQNADPL----QVDKLGKIDNAANHLLQLLNDVLDLSKIDAERMTLEQTAF 345

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNI--PRILADLRSVKQIALNILSNAIHFTP 720
           S+ E  ++  SL+   A   R+       + +   R+L D   ++Q+ LN+  NAI FT 
Sbjct: 346 SIPELAADVASLLTPRAESARLRFILDVDSRLKGLRLLGDPLRLQQVLLNLAGNAIKFTE 405

Query: 721 SGGQIIISTTHTSNE---EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
            G   I++     +E    + L VRDTG+G+    + +   PF Q   S   +  GTGLG
Sbjct: 406 RGEVRIVARVVEDDEKAVHIELSVRDTGIGIAPEAIGRIFNPFEQADGSTTRKYGGTGLG 465

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
           LP+ + +V    G+  + STP  G+       L      H
Sbjct: 466 LPICQRLVRLMGGEIQVVSTPGAGSEFTFTVRLQRAEPLH 505


>gi|302343425|ref|YP_003807954.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM
           2075]
 gi|301640038|gb|ADK85360.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM
           2075]
          Length = 847

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 92/634 (14%), Positives = 193/634 (30%), Gaps = 50/634 (7%)

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
            + E++    ++E      +S   P    +M    S L             +    L+ +
Sbjct: 104 AVKEMRARDQALEIVVMTAYSDVPPGRIAQMAPPPSKLLYMQKPFHAHELRQLVASLSDK 163

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
             S  E E        +  ++       N S             +  A     E      
Sbjct: 164 WRSQRELERTQRELERRVEERTAQLAQANASLREE----IERRRANQAELARSEQNLRLI 219

Query: 326 VDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
           +D  P+   +    G +   N + L L+ +   +D+        +         +   P 
Sbjct: 220 LDCLPVGLMITDSAGKVLRVNAAALKLSGHAHENDLLGRHCREII-------AEHEQSPW 272

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
                        + L  +         +  +    A +            +  + +  +
Sbjct: 273 PPSAEPGPSQPCESTLMRLSGEG-----LPVLVSAIALKLDGQDVLLQAIADLSERKNWE 327

Query: 445 RKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
           R +     +   ++E    GI   +      LS N  + +  GY  ++ L       L  
Sbjct: 328 RALNESEARYRQLVEFAPAGIYEFDFSASRFLSVNEVMLEYTGYDRDEFLALRPEKLLTP 387

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL---TMHD 560
            +         ++L+ D+           TK  + +   +    +       +     +D
Sbjct: 388 ESLRDYLGQQKQLLAGDISSQTN-EYQFYTKSGRTMWALVNANFVFDGQGRLVGRVVAND 446

Query: 561 ISEWKQEKNKLSHAKKIAEKES--SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
           I+  KQ +      +    +             V+H+    L A+IGF+E+   +     
Sbjct: 447 ITARKQAEQDKVLMESRIRQAQKMEALGSLAGGVAHDFNNILNAVIGFTELTLRELG--- 503

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
                  Y  ++ ++G    ++V  +L  S+          +P+ +   V E + L++  
Sbjct: 504 EQETPKAYLKHVLQAGRRASELVRQILTFSR----GGEPEKKPIHVAIVVKEVLKLLRAS 559

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT-------- 730
                I I+ +  N    +LAD   + Q+ +N+ +NA       G + +           
Sbjct: 560 LPA-GIEIKQNIQNADELVLADPSQIHQVMMNLCANAAQAMGESGLLTVELRKVTLGRPL 618

Query: 731 ------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
                       V L V D G G+    + +  +P+    ++      GTGLGL +   +
Sbjct: 619 ELDMASLPPGPYVQLVVADNGPGVEPAHIGRIFEPYFSTKSA----SGGTGLGLAVVHGI 674

Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
           V    G   + S P  G    +  P+   +   D
Sbjct: 675 VKGLDGAIDVKSAPGAGCQFRVFLPIPGLAADDD 708



 Score = 47.7 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 30/312 (9%), Positives = 74/312 (23%), Gaps = 20/312 (6%)

Query: 94  YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY--GKTTLWP 151
               ++E + +  G    + + +R   +     +         L   +      +   + 
Sbjct: 357 RFLSVNEVMLEYTGYDRDEFLALRPEKLLTPESLRDYLGQQKQLLAGDISSQTNEYQFYT 416

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
             G  ++  +   A  ++       G     + +              ++ +     +++
Sbjct: 417 KSGRTMWALV--NANFVFDGQGRLVGRV---VANDITARKQAEQDKVLMESRIRQAQKME 471

Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271
              S      +D            + N V   TE    +    +T K  L    ++    
Sbjct: 472 ALGSLAGGVAHDF---------NNILNAVIGFTELTLRELGEQETPKAYLKHVLQAGRRA 522

Query: 272 QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI 331
            E    I       +     +             R          +      E V     
Sbjct: 523 SELVRQILTFSRGGEPEKKPIHVAIVVKEVLKLLRASLPAGIEIKQNIQNADELV--LAD 580

Query: 332 PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR 391
           P  ++       AN +         +  +E+            ++       V L  +D 
Sbjct: 581 PSQIHQVMMNLCANAA--QAMGESGLLTVELRKVTLGRPLELDMASLPPGPYVQLVVADN 638

Query: 392 TCIAASARLHTI 403
                 A +  I
Sbjct: 639 GPGVEPAHIGRI 650


>gi|221067277|ref|ZP_03543382.1| PAS/PAC sensor hybrid histidine kinase [Comamonas testosteroni
           KF-1]
 gi|220712300|gb|EED67668.1| PAS/PAC sensor hybrid histidine kinase [Comamonas testosteroni
           KF-1]
          Length = 751

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 101/628 (16%), Positives = 211/628 (33%), Gaps = 57/628 (9%)

Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271
             +++     +   S+ +PPP L + +    L    A     L      L  S +  +P+
Sbjct: 15  PAYTAGNSACFMSSSEPTPPPLLPVIDGGLPLHALLAPGAAPL-----GLNASTQPLVPD 69

Query: 272 QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI 331
            +D     + +    Q+   LQN      + ++           +             P+
Sbjct: 70  DDDPLQALVAELRNYQHELELQNEVLNYSQAVA-----------ESASERFETLFASIPL 118

Query: 332 PFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390
           P  V      +  AN       +    D + I           +       +   L R++
Sbjct: 119 PLLVVDEYDMVVQANAMAHRAFQPTEKDRLLINFKPFVHFKDAERVTTAFEQAKALGRAE 178

Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR---INKRKM 447
              +              +   +          +          P   + +      +++
Sbjct: 179 VHEVLFRITDEFELCGDLHVAGVIVPQQNGPATWQYLCAVVNQGPLLAERKALQERNQQL 238

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
                +L S++ +  D I  +++   I   N   + LF    +D L  P   FL     +
Sbjct: 239 YASERRLESVINSALDAIICVDQYQRITVFNPTAAALFLCSPQDALGSPLERFLPDAARA 298

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM--HDISEWK 565
           +    LT    L           G T   + + + I +     SS  + T+   D++   
Sbjct: 299 LAFSSLTTQAVLG-------EMTGLTMAGREIPMEISVSFEHHSSGDTTTIFARDLTSRN 351

Query: 566 QEKNKLSHAKKIAEKE--SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
           + + + +  +    +             ++H+    + AI+G  E+    +     NP  
Sbjct: 352 RAEAQRNALETQLRESHKMQAVGTMAGGIAHDFNNIVGAILGNVELA---KVDSANNPAA 408

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
           +E    I+++G    D+V  +L  S+ +         PV + E +S+   L+++      
Sbjct: 409 MESLREIEKAGRRARDLVRQILTFSRND----LPERRPVQVQEVMSDTARLLRVTLPP-S 463

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHF-TPSGGQIIIS-------------T 729
           I ++   +  +P ++AD   V+Q   N+ +NA+       G I +               
Sbjct: 464 IELQVLESEGLPPLMADPTQVEQALFNLCNNAMQAIGNQRGFIQMRAMRIAPDHYQCERL 523

Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
                E ++  V+D+G G+      +  +PF          G+GTGLGL +   ++  + 
Sbjct: 524 GLPVAEYLVFMVQDSGPGIDIVTQRRIFEPFFTTKP----VGQGTGLGLSVVHGVMRTHG 579

Query: 790 GKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
           G   + S   +G+   + FPL + S  H
Sbjct: 580 GAVDVHSELGQGSCFTLYFPLGEPSGSH 607


>gi|254228693|ref|ZP_04922117.1| phosphate regulon sensor kinase PhoR [Vibrio sp. Ex25]
 gi|151938872|gb|EDN57706.1| phosphate regulon sensor kinase PhoR [Vibrio sp. Ex25]
          Length = 432

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 71/364 (19%), Positives = 147/364 (40%), Gaps = 29/364 (7%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           ++   + +  +  E+  D + +   EG I+  N+    L G+   +   +P +  +    
Sbjct: 92  ELTNLIRRFRNGAESLPDAVVVFRAEGNIVWCNKLAQHLLGFHWPEDSGQPISNLIRTPD 151

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
                +       L++R  L    +          L + I        + + + D+S+ K
Sbjct: 152 FIKYLNKKDFSEPLEMRSPLNVERM----------LELRIVPYTEGE-HLMVVRDVSQLK 200

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           Q +                + +F A VSHE+RTP+T + G+ E+   +    +  P + +
Sbjct: 201 QLEG--------------MRRNFFANVSHELRTPMTVLQGYLEM--TEDPDMVVGPMWSK 244

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
               +    N +  +VN LL +SKIE+  M+   + V++   +          + + +  
Sbjct: 245 AHGVMTEQLNRMNSLVNQLLTLSKIEAAPMHELEDVVNVPAMLEVLEKEAVSLSGDNQHK 304

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           ++     ++ R+L D   ++    N++ NA+ +TP G  I +    TS     L V D+G
Sbjct: 305 LKFDVDASL-RVLGDDDQLRSAISNLVYNAVKYTPPGANINVRWFQTSQG-ACLEVEDSG 362

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
            G+    L +  + F ++  ++     G+GLGL + K  +  +     I S    G+   
Sbjct: 363 DGIEPQHLHRLTERFYRVDKARSRDTGGSGLGLAIVKHALSHHDAHLEIHSEVGVGSKFS 422

Query: 806 IIFP 809
            + P
Sbjct: 423 FVLP 426


>gi|167646307|ref|YP_001683970.1| PAS/PAC sensor signal transduction histidine kinase [Caulobacter
           sp. K31]
 gi|167348737|gb|ABZ71472.1| PAS/PAC sensor signal transduction histidine kinase [Caulobacter
           sp. K31]
          Length = 509

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 79/486 (16%), Positives = 173/486 (35%), Gaps = 26/486 (5%)

Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
             +   G +   N +   +  Y   + +              +++      +     D  
Sbjct: 31  VLLDPQGVILDMNNA-TEVVGYWPPEQVRGRSH-ELFYPPDGIAEGRPAADLSAAVKDSL 88

Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
                     +  +    LA         ++       + I  +       +  +E    
Sbjct: 89  L---ERDAWRVCHDGSEYLA-RLTINALWDESGVLRGFSCIARDITVDVAVRASIEAREQ 144

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
            L SIL    D + II+  G I S + A  +LFGY   ++L +  +  + +      + Y
Sbjct: 145 HLQSILATVPDAMIIIDERGTITSFSAAAERLFGYGESELLGRNISCLMPEPDRGRHDQY 204

Query: 513 LTEILSLDLRQTL--EKITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEK 568
           +   L    R+ +   ++ +G  ++     + + + +        ++  + D++  ++++
Sbjct: 205 IAHYLETGERRVIGMGRVVVGQRRDGTTFPMELSVGQAGEDGSRIFTGFVRDLTAKERDE 264

Query: 569 NKLSHAKKIAEKESS--HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR--YI 624
            +L   +      S         + ++HEI  PLTA+  + E I++   G     R    
Sbjct: 265 LRLKELQAELVHVSRLSAMGTMASTLAHEINQPLTAVANYLETIRDLLIGDAEIDRSLLR 324

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           E              IV  L D       + ++      L   + EA +L  + A E+ +
Sbjct: 325 EAVGEAASETLRAGFIVRRLRDF----VARGDVDKSIEDLPRLIEEAGNLALVGARERGV 380

Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG--QIIISTTHTSNEEVILRVR 742
                F       L D   ++Q+ +N++ NA+         ++ +ST    +  + + V 
Sbjct: 381 RSFFRFDLEATPALVDRVQIQQVLVNLMRNAVEAMAESEVRELTVSTLLRPDGAIEVSVE 440

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG G+++    +  + F         + EG GLGL + + +++A+ G+    + P  GT
Sbjct: 441 DTGPGISDEIAPRLFQAFV------SSKAEGMGLGLSICRTIIEAHGGRILADALPGGGT 494

Query: 803 LIEIIF 808
                 
Sbjct: 495 AFRFTL 500



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/251 (12%), Positives = 64/251 (25%), Gaps = 18/251 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTWY--- 144
           ID  G +   S    +  G    +++G  +  +        ++  I   L+         
Sbjct: 160 IDERGTITSFSAAAERLFGYGESELLGRNISCLMPEPDRGRHDQYIAHYLETGERRVIGM 219

Query: 145 -GKTTLWPIEGTNLYVPIDLA-ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
                    +GT    P++L+        +R F+GF         R          RL +
Sbjct: 220 GRVVVGQRRDGTTF--PMELSVGQAGEDGSRIFTGF--------VRDLTAKERDELRLKE 269

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
             + L  + +  +              P   +    +          + D     +    
Sbjct: 270 LQAELVHVSRLSAMGTMASTLAHEINQPLTAVANYLETIRDLLIGDAEIDRSLLREAVGE 329

Query: 263 TSEESSLPE--QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
            + E+                    K      +   +     L       + ++F     
Sbjct: 330 AASETLRAGFIVRRLRDFVARGDVDKSIEDLPRLIEEAGNLALVGARERGVRSFFRFDLE 389

Query: 321 LTPETVDKCPI 331
            TP  VD+  I
Sbjct: 390 ATPALVDRVQI 400



 Score = 52.3 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 42/393 (10%), Positives = 99/393 (25%), Gaps = 26/393 (6%)

Query: 89  IDAHGYLKEISEELPKTIGN-YAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
           +D  G + +++    + +G     ++ G           I       DL         + 
Sbjct: 33  LDPQGVILDMN-NATEVVGYWPPEQVRGRSHELFYPPDGIAEGRPAADLSAAVKDSLLER 91

Query: 148 TLWPI--EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
             W +  +G+     + + AL  +  +    GF    I     VD   RA  +  ++   
Sbjct: 92  DAWRVCHDGSEYLARLTINAL--WDESGVLRGFS--CIARDITVDVAVRASIEAREQHLQ 147

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPP------PHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
            +         +  E+  I S  +            +  +  S       +    +   +
Sbjct: 148 SILATVPDAMIIIDERGTITSFSAAAERLFGYGESELLGRNISCLMPEPDRGRHDQYIAH 207

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
            L T E   +           +  T        Q     S  +       +     +   
Sbjct: 208 YLETGERRVIGMGRVVVGQRRDGTTFPMELSVGQAGEDGSRIFTGFVRDLTAKERDELRL 267

Query: 320 NLTPETVDKCPIPFFVYSHGNLFYA--NPSFLLLTKYKS--VDDIEIAGGLSTLLDAPKL 375
                 +        + +  +      N     +  Y     D +     +   L    +
Sbjct: 268 KELQAELVHVSRLSAMGTMASTLAHEINQPLTAVANYLETIRDLLIGDAEIDRSLLREAV 327

Query: 376 SDN-----NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
            +       A   V   R           +  +    E +  +  +   +          
Sbjct: 328 GEAASETLRAGFIVRRLRDFVARGDVDKSIEDLPRLIEEAGNLALVGARERGVRSFFRFD 387

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
               P  VD    ++ +   V  + + +EA ++
Sbjct: 388 LEATPALVDRVQIQQVL---VNLMRNAVEAMAE 417



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/108 (16%), Positives = 40/108 (37%), Gaps = 5/108 (4%)

Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
           +A+   I +++ +G+IL  N A   +  +P E +  +   +F   +  +       ++ +
Sbjct: 24  QASGYAIVLLDPQGVILDMNNATEVVGYWPPEQVRGRSHELFYPPDGIAEGRPA-ADLSA 82

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDIS 562
                 LE+       +      R+ I  L         +S    DI+
Sbjct: 83  AVKDSLLERDAWRVCHDGSEYLARLTINALWDESGVLRGFSCIARDIT 130


>gi|116622423|ref|YP_824579.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116225585|gb|ABJ84294.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 690

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 92/564 (16%), Positives = 192/564 (34%), Gaps = 63/564 (11%)

Query: 285 KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFY 343
            ++   + +    E                  + E      V         Y     L +
Sbjct: 4   PREELESQRVRELEELLTREIGARKRAEEALSQSEARFRFIVKGFSEMVLAYDMDRRLTF 63

Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403
            N +   LT Y + + ++  G +        +  ++  + +  +    T ++     + +
Sbjct: 64  VNAAAQSLTGYSAAE-LQQEGFIC------WVHPDDRGRMLGYWDRLFTGLSFQEEEYRL 116

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
                    M+       +     +   G E E  + R+ +  + I   +  ++ E +  
Sbjct: 117 VTRDGRVKWMSASWGPLMDDNGRQVGVQGREREVTERRMAEETLRIREQRYRTLFEESPF 176

Query: 464 GIA------------IINREG----------------------IILSTNRAVSKLFGYPV 489
            +              +   G                       IL  N A  + +G   
Sbjct: 177 PMWEEDFSEVKRFLDALRARGIREVGSHLMQNREDLAECVRRIRILDVNHAARQFYGVST 236

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
           +D L    +  L++    V+   +  +         E  T     E++ +S+ + ++  P
Sbjct: 237 KDELMGDLSRILDEEGWDVICAEMASLADGASMFKAEFETRTILGEQRTVSMIVSLEPSP 296

Query: 550 FS-SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
              S   ++  DI++ K+ + +   ++K+              ++H+    L  I G+SE
Sbjct: 297 GDWSRVIVSFFDITDRKRLEEQFLQSQKL-----ESLGRLAGGIAHDFNNLLMVITGYSE 351

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
           ++ +       + R +     I  +G+   ++   LL  S+ + G    H   + L+  V
Sbjct: 352 LLLSDAG---LSQRTMTGLREIRCAGDRGAELTGQLLAFSRKQIG----HPRALDLNALV 404

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
            E+  +++     + + +  S       I AD   + Q+ +N++ NA    P GG + I 
Sbjct: 405 RESQGMLE-RLLGEDVRLAVSLDPAASAIRADRGQMHQVLMNLVVNAREAMPEGGTLWIE 463

Query: 729 TTHTSN---EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
           T + +      V LRV DTGVGM         +PF     +     +GTGLGL     +V
Sbjct: 464 TANVTEGGLGYVRLRVADTGVGMDERTRLLVFEPFFTTKGA----SKGTGLGLATVFGVV 519

Query: 786 DANMGKFYIFSTPAKGTLIEIIFP 809
               G   + S P  G +  +  P
Sbjct: 520 TQAGGHISVTSEPGHGAVFNLYLP 543



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/382 (8%), Positives = 98/382 (25%), Gaps = 11/382 (2%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D    L  ++       G  A ++                     D L    ++  +   
Sbjct: 56  DMDRRLTFVNAAAQSLTGYSAAELQQEGFICWVHPDDRGRMLGYWDRLFTGLSFQEEEYR 115

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
             +        +  +  P+   N    G +G                 +  ++++  L E
Sbjct: 116 L-VTRDGRVKWMSASWGPLMDDNGRQVGVQGRE--REVTERRMAEETLRIREQRYRTLFE 172

Query: 210 IKKGHSSVEK--EKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
                   E   E               + + +    E  A     ++         +  
Sbjct: 173 ESPFPMWEEDFSEVKRFLDALRARGIREVGSHLMQNREDLAECVRRIRILDVNHAARQFY 232

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
            +  +++    +L++   ++ +  +        +  S       +      +      V 
Sbjct: 233 GVSTKDEL-MGDLSRILDEEGWDVICAEMASLADGASMFKAEFETRTILGEQRTVSMIVS 291

Query: 328 KCPIPF----FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
             P P      + S  ++           + + ++ +    G         L        
Sbjct: 292 LEPSPGDWSRVIVSFFDITDRKRLEEQFLQSQKLESLGRLAGGIAHDFNNLLMVITGYSE 351

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
           ++L  +  +    +  L  I+   +    +T      + +   +     +     +++  
Sbjct: 352 LLLSDAGLSQRTMTG-LREIRCAGDRGAELTGQLLAFSRKQIGHPRALDLNALVRESQGM 410

Query: 444 KRKMEIEVMQLCSILEATSDGI 465
             ++  E ++L   L+  +  I
Sbjct: 411 LERLLGEDVRLAVSLDPAASAI 432


>gi|329930198|ref|ZP_08283811.1| PAS domain S-box protein [Paenibacillus sp. HGF5]
 gi|328935220|gb|EGG31701.1| PAS domain S-box protein [Paenibacillus sp. HGF5]
          Length = 764

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 73/406 (17%), Positives = 162/406 (39%), Gaps = 28/406 (6%)

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
           +  L ++            N     +       +    + +     L S++  T+D I  
Sbjct: 374 DRRLEVSSRDELGQLAGRINAMTRNLGTYTSQLKQMVDENQSVKEYLESVINQTADAIHT 433

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
            +    ++S N+A  +L+G+   +++ +     +           +  + + +    +  
Sbjct: 434 TDTYERVISVNKAFEQLYGWKAHEVVGRKLA-LVPPAKEEEEKERIRRLRAGERLPPV-- 490

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
            T+   K+   + + I    +   +           D++E  + +  L  ++K+      
Sbjct: 491 ETVRLRKDGSTIEVSISTSLVRDENGEVTSMISVSRDVTERNRIEELLRRSEKLNTV--- 547

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
                 A V+HEIR PLT + GF + ++ Q      +     + + +    + +  IV++
Sbjct: 548 --GQLAAGVAHEIRNPLTTLRGFLQ-LQQQTHQANPD-----HIDLMLSELDRINLIVSE 599

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703
            L ++K ++    ++F+   +   + + IS +   A+   I  +  F      +  +   
Sbjct: 600 FLILAKPQA----INFQERDVGIIMGDVISFLDSQAHLYGIEFKLDFIEEPTFVHCEENQ 655

Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
           +KQ+ +N+L NAI   P GG I I  T    +++ + +RD G G+    +    +PF   
Sbjct: 656 LKQVFINLLKNAIEAMPEGGNIWIRLTRPQVDQIQIDIRDEGQGIPEDMMPHLGEPF--- 712

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
                 +  GTGLGL +++ ++  + G   I S    GT + I+ P
Sbjct: 713 ---ITNKETGTGLGLMVSQRIIQGHRGTMEIESEVGVGTRVSIVLP 755



 Score = 62.7 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/117 (15%), Positives = 41/117 (35%), Gaps = 4/117 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            D +  +  +++   +  G  A +++G +L  V      +    I  L   +     +T 
Sbjct: 434 TDTYERVISVNKAFEQLYGWKAHEVVGRKLALVPPAKEEEEKERIRRLRAGERLPPVETV 493

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
               +G+ + V I  +   +   N E +      +       N    L +R +K  +
Sbjct: 494 RLRKDGSTIEVSISTSL--VRDENGEVTSM--ISVSRDVTERNRIEELLRRSEKLNT 546


>gi|322418768|ref|YP_004197991.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
 gi|320125155|gb|ADW12715.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
          Length = 850

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 103/616 (16%), Positives = 188/616 (30%), Gaps = 50/616 (8%)

Query: 219 KEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTI 278
              + I       P  ++     +L E         +          E+   +      I
Sbjct: 116 DADFFITDVAPLAPSRQIVGLKLNLPEPKMASRLARERRTPVYTRPFEAIQGKPSF--EI 173

Query: 279 NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH 338
            +  Y    + G                       Y     +     +   P    V   
Sbjct: 174 WVPVYRGDTFLGLFGGVYSCDKLLQQLITQTRPRMYHLSLTDSGGRLLASSPQLEAVDRG 233

Query: 339 G--NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA 396
                   + +  ++ +              TLL    L     +   +           
Sbjct: 234 FLKESVITDDASGVMLRVTRYQ--SRTDWRLTLLKGISLLLVMGMGYALRMLKLEIDERR 291

Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
            A     +   E    +      +     +      +E E  + R  +  +     +L  
Sbjct: 292 RAEEEVKRKAAELVEEVAVRQAVQETLQEQAAL---LEEEIAERRQAEEALRESEERLRL 348

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYP-VEDILRKPFTVFLEQNTPSVMNHYLTE 515
           +L++T + I  I  +GI    NRA  ++ GY   E++L K     +  + P        E
Sbjct: 349 LLDSTGEAIYGIGIDGICTFCNRACLRMLGYQGEEELLGKNMHSVMHHSYPDGRKMPEEE 408

Query: 516 ILSL-----DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQE 567
             +           +E        +     +                 +   + +E +Q 
Sbjct: 409 CSAHLTMLQGKGSHVEDEVFWR-ADGTSFPVEYWSHPQVKEGKVVGAVVAFINTTERRQL 467

Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
           + +   ++K+              V+H+    L+ I G +E   ++R    G P   +Y 
Sbjct: 468 EEQFRQSQKM-----ESIGRLAGGVAHDFNNMLSVITGAAE--LSRRKAEEGAP-IGQYL 519

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
             I  +     DI   LL  S+ E     +  + V+L++ + E+  ++    +E  + + 
Sbjct: 520 ELIINAARRSSDITRQLLAFSRKE----VVSPKAVNLNQLIEESNKILTRLISE-DVRLS 574

Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT--------------HTS 733
              A  I  +L D   V QI +N+  NA    P GG + I T                  
Sbjct: 575 FHPAPEIWSVLIDPSQVDQILINLAVNARDAMPDGGSLAIETANVQISNYYAYLHPDARP 634

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
            + V L V DTG GM    L    +PF          G+GTGLGL     +V  N G   
Sbjct: 635 GDYVRLTVSDTGHGMDKATLAHVFEPFFTTKA----VGKGTGLGLSTVYGIVSQNGGFIN 690

Query: 794 IFSTPAKGTLIEIIFP 809
           ++S P +G + +I  P
Sbjct: 691 VYSEPGQGAVFKIYLP 706



 Score = 41.2 bits (95), Expect = 0.67,   Method: Composition-based stats.
 Identities = 25/259 (9%), Positives = 67/259 (25%), Gaps = 18/259 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNY-AFKMIGMRLCDVSDILHIDPNNHIGD-------LL 137
            + I   G     +    + +G     +++G  +  V    + D      +       +L
Sbjct: 357 IYGIGIDGICTFCNRACLRMLGYQGEEELLGKNMHSVMHHSYPDGRKMPEEECSAHLTML 416

Query: 138 KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG 197
           + + +       W  +GT+   P++  + P   +  +  G     +  +N  +       
Sbjct: 417 QGKGSHVEDEVFWRADGTSF--PVEYWSHP-QVKEGKVVGAV---VAFINTTERRQLEEQ 470

Query: 198 KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV-SSLTEYYAHKDDVLKT 256
            R  +K   +  +  G +        + +  +     + +                   +
Sbjct: 471 FRQSQKMESIGRLAGGVAHDFNNMLSVITGAAELSRRKAEEGAPIGQYLELIINAARRSS 530

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
           +    L +             +N       +    L +       + +      L     
Sbjct: 531 DITRQLLAFSRKEVVSPKAVNLNQLIEESNKILTRLISEDVRLSFHPAPEIWSVLIDPSQ 590

Query: 317 EGE---NLTPETVDKCPIP 332
             +   NL     D  P  
Sbjct: 591 VDQILINLAVNARDAMPDG 609


>gi|219848609|ref|YP_002463042.1| histidine kinase [Chloroflexus aggregans DSM 9485]
 gi|219542868|gb|ACL24606.1| histidine kinase [Chloroflexus aggregans DSM 9485]
          Length = 910

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 82/252 (32%), Positives = 134/252 (53%), Gaps = 3/252 (1%)

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           ++ E ++ + +L  A+  AE  S  KS FLA +SHE+RTPLTAIIG+S+ +  Q      
Sbjct: 371 EVQERRRIEQELIRARDAAEAASRAKSTFLATMSHELRTPLTAIIGYSQ-LLEQLVDKGI 429

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
                     I  +GN +L ++ND+LDISKIE+G+M +  E   + + V +A++ V    
Sbjct: 430 YETVAHDVRRIRAAGNHLLTLINDILDISKIEAGRMTISVEYADVADLVRDAVNTVLPQM 489

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV-- 737
            +    ++     +I  + +D   V+Q  +N+LSNA  FT +G   +  T +     +  
Sbjct: 490 EKNHNRLQLHCPPDIGMLNSDATKVRQALINLLSNAAKFTENGTVTLTVTRYEDEGRLWF 549

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
              V DTG+G+   +L+K  K F QI +S   +  GTGLGL L++ + +   G+  + ST
Sbjct: 550 RFTVADTGIGIPPDKLDKLFKAFSQIDDSPTRKYGGTGLGLALSQRLCELVGGRITVQST 609

Query: 798 PAKGTLIEIIFP 809
              G++  I  P
Sbjct: 610 VGVGSVFTIEVP 621


>gi|254475691|ref|ZP_05089077.1| alkaline phosphatase synthesis sensor protein PhoR [Ruegeria sp.
           R11]
 gi|214029934|gb|EEB70769.1| alkaline phosphatase synthesis sensor protein PhoR [Ruegeria sp.
           R11]
          Length = 346

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 73/362 (20%), Positives = 150/362 (41%), Gaps = 36/362 (9%)

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
           +EA      ++++    ++ N A   L G     ++ + F   L       +   +   L
Sbjct: 10  MEAMPLPAVLVDQSERFIAANAAAKTLLG---AHLVGRHFATILR---QPSVAAAIEGCL 63

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF---SSCYSLTMHDISEWKQEKNKLSHA 574
                ++  +       ++    + +               +++ DI+E +Q        
Sbjct: 64  HDRQPRS-ARHLSNDGAQDTTFEVCLRYIPGIGAVNGGAALVSLTDITEREQ-------- 114

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE-YANYIDRS 633
                  S  + DF+A VSHE+RTPLTA++GF E +   R     +    E +   +   
Sbjct: 115 ------ASQMRRDFVANVSHELRTPLTALMGFIETL---RGPARDDAAARERFLEIMQGE 165

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693
            N +  +V DLL ++++ES +     E + L   ++  +  ++  A  K + +       
Sbjct: 166 ANRMNRLVGDLLSLNRVESEERVRPREQLDLGAHLASTLKSLEPVAQGKEVSLALEVPQT 225

Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE------EVILRVRDTGVG 747
              +  D   ++Q+  N++ NAI +   G Q+++  + +  +       V ++V D G G
Sbjct: 226 PTLVTGDPDQLQQVFTNLVENAIKYG--GNQVLVRLSLSDRDPAVRSAAVRVQVIDNGAG 283

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           +    L +  + F ++   +     GTGLGL + K +V+ + G+  + S+  KGT   +I
Sbjct: 284 IDPIHLPRLTERFYRVDTHRSREQGGTGLGLAIVKHIVNRHRGRMRVESSAGKGTTFTVI 343

Query: 808 FP 809
            P
Sbjct: 344 LP 345


>gi|162448698|ref|YP_001611065.1| histidine kinase [Sorangium cellulosum 'So ce 56']
 gi|161159280|emb|CAN90585.1| histidine kinase [Sorangium cellulosum 'So ce 56']
          Length = 740

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 102/684 (14%), Positives = 208/684 (30%), Gaps = 72/684 (10%)

Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS 242
           +VH+ R     R        +     E      +   E+  + +  +          V +
Sbjct: 79  LVHMLRPIERLRQYAVAHRLQSGAGVEDTSSGGAAPPEEVVLAAANAAYDTPLAFATVWA 138

Query: 243 LTEYYAHKD-DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301
           ++    +    +      P  +              + L        +  L      +  
Sbjct: 139 VSWGLLYLPVTMALYLIAPDQSPLGVQRGVALALFALALFAAALPLAYSILGRLLAPAAG 198

Query: 302 YLSHRNHPSLSAYFDEGENLTPETV-----------DKCPIPFFVYSHGNLFYANPSFLL 350
            +S        +   +G +L    V                     + G    A P   L
Sbjct: 199 VISLIARERGLSMPGKGYSLAVRLVILGACLAIAPTSWMAAMVLGETAG---PAKPGLKL 255

Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
                S+  +  A   +  L          +  V+     R  +    R+     +   +
Sbjct: 256 TLAIFSMVAVTWAPVCAGFLAGALAGPLQQVAAVIQKIVQRGEVDRLERIPVYFKDEIGA 315

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470
           LA          +               +     +       QL ++L+   +G+   +R
Sbjct: 316 LAGGVNAMVDRLEESSRR----TRSYLAERERLLQDAAQRAAQLGAVLDNLVEGVFACDR 371

Query: 471 EGIILSTNRAVSKLFGYP-VEDILRK------PFTVFLEQNTPSVMNHYLTEILS-LDLR 522
           +G +   N +  +L G     +   +              +  +     L  + +     
Sbjct: 372 QGRLTMINASGLRLLGLSGRSEQAGRMVEEVMDLGRMRHSDGRAFTRDELPMVRALAGET 431

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS----LTMHDISEWKQEKNKLSHAKKIA 578
              E+  L   +  + + LR     +               D++E               
Sbjct: 432 IVQEEQVLADGRAGRDVFLRTSAAPIRSEGGAVLGAVAVARDVTE--------------L 477

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
            +    K  F+   +HE++TP+  + G++  +              +    IDR  + + 
Sbjct: 478 MELDLVKDQFIRVGAHELKTPVAIMKGYALALLRNSNDLPAP--RRKMLEAIDRGADRIN 535

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
            IV+DLL IS++    + +  E V L E V E++  V   A+  R+ +    A   P + 
Sbjct: 536 RIVDDLLAISQVTLDVLQVSEEDVDLKELVQESVDRVAKSASRHRVRLSLD-AERPPVVR 594

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----------------------- 735
           AD   ++Q+  ++L NA+ ++P GG + +                               
Sbjct: 595 ADPERLRQVLASLLDNAVKYSPDGGDVDVRVAVAERAPASSPPSSCDAALFSQRHGAAPR 654

Query: 736 -EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
            E ++ VRD GVG+  +  E+  + F +     +    G G+GL LAK M+  + G+ + 
Sbjct: 655 FEAVVSVRDQGVGIPAHRQERIFERFFRAHTDTRHDYGGMGIGLFLAKDMITRHGGRIWF 714

Query: 795 FSTPAKGTLIEIIFPLYDTSHPHD 818
            S    G+      PL   +   D
Sbjct: 715 ESEEDSGSTFYFTLPLSSEAPAAD 738



 Score = 45.4 bits (106), Expect = 0.042,   Method: Composition-based stats.
 Identities = 37/356 (10%), Positives = 76/356 (21%), Gaps = 21/356 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNY-AFKMIGMRLCDVSDILHIDPNNHIG---------D 135
            +  D  G L  I+    + +G     +  G  + +V D+  +  ++             
Sbjct: 366 VFACDRQGRLTMINASGLRLLGLSGRSEQAGRMVEEVMDLGRMRHSDGRAFTRDELPMVR 425

Query: 136 LLKRQNTWYGKTTLWPIEGTNLY-VPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR 194
            L  +     +  L   +G     V +  +A PI S      G     +        +  
Sbjct: 426 ALAGETIVQEEQVL--ADGRAGRDVFLRTSAAPIRSEGGAVLGA--VAVARDVTELMELD 481

Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254
            +  +  +  +H  +                S   P P  +M   +    +      D L
Sbjct: 482 LVKDQFIRVGAHELKTPVAIMKGYALALLRNSNDLPAPRRKMLEAIDRGADRINRIVDDL 541

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
                  L   + S  E  D   +      +     +                       
Sbjct: 542 LAISQVTLDVLQVS-EEDVDLKELVQESVDRVAKSASRHRVRLSLDAERPPVVRADPERL 600

Query: 315 FDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDD--IEIAGGLSTLLDA 372
                +L    V   P                     +   S D        G +   +A
Sbjct: 601 RQVLASLLDNAVKYSPDG---GDVDVRVAVAERAPASSPPSSCDAALFSQRHGAAPRFEA 657

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
                +  +      +         A   T        + +               
Sbjct: 658 VVSVRDQGVGIPAHRQERIFERFFRAHTDTRHDYGGMGIGLFLAKDMITRHGGRIW 713


>gi|22126271|ref|NP_669694.1| histidine protein kinase sensor [Yersinia pestis KIM 10]
 gi|108807298|ref|YP_651214.1| signal transduction histidine kinase [Yersinia pestis Antiqua]
 gi|21959245|gb|AAM85945.1|AE013841_10 putative Histidine protein kinase sensor [Yersinia pestis KIM 10]
 gi|108779211|gb|ABG13269.1| signal transduction histidine kinase [Yersinia pestis Antiqua]
          Length = 1283

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 89/378 (23%), Positives = 168/378 (44%), Gaps = 16/378 (4%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG---YPVEDILRKPF 497
           R   + +   ++Q  SI+ A    + I    G +   N   + +     Y + +   +P 
Sbjct: 589 RRQAKLLHARLLQQESIINALPFAVFIRTASGELAVYNSHFADVHSDKLYDMLNQTHEPA 648

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF-SSCYSL 556
              +       ++ Y   +L     Q ++           +  + + I  L         
Sbjct: 649 HWPMTSPLDREIDKYCRSVLLNRKPQLVDLSVEIK---GDIRDIFLWIIPLNNAEQGVLG 705

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
              DIS+ K  + +L  A+  AE  +  KS FLA +SHE+RTP+ AI+G  E+       
Sbjct: 706 GWLDISQRKTVERQLEAARVEAESANRTKSTFLATISHELRTPMYAIMGLLELEIRS--- 762

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
               P   +    + +S   ++ +++D++D +KIE+G++++H   V   + +    +L Q
Sbjct: 763 --NRPVEKDTLVTVSKSAQSLMLLLDDIIDSAKIEAGQLSIHPTAVDFHQEMERMFTLYQ 820

Query: 677 LYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSN 734
             ANE+ +       ++IP + +AD+  V+Q+  N+L NA+ FT  G   + I+   +  
Sbjct: 821 PIANERGLRFSGWLDDHIPPLLMADMLRVRQVMGNLLGNALKFTEQGSVSVDITWEPSDE 880

Query: 735 EEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
           +  +  + + DTG+G++        +PF Q    +  R  G+GLGL +   ++    GK 
Sbjct: 881 QHGVMNIDITDTGIGISPAAQATLFQPFSQANEGKSPRFGGSGLGLWICHQLIHKMGGKI 940

Query: 793 YIFSTPAKGTLIEIIFPL 810
            + S   KGT + I  PL
Sbjct: 941 ALESQLGKGTSLLITLPL 958


>gi|51596248|ref|YP_070439.1| two-component sensor [Yersinia pseudotuberculosis IP 32953]
 gi|51589530|emb|CAH21160.1| possible two-component sensor [Yersinia pseudotuberculosis IP
           32953]
          Length = 1342

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 89/378 (23%), Positives = 169/378 (44%), Gaps = 16/378 (4%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG---YPVEDILRKPF 497
           R   + +   ++Q  SI+ A    + I    G +   N   + +     Y + +   +P 
Sbjct: 601 RRQAKLLHARLLQQESIINALPFAVFIRTASGELAVYNSHFADVHSDKLYDMLNQTHEPA 660

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF-SSCYSL 556
              +       ++ Y   +L     Q ++          ++  + + I  L         
Sbjct: 661 HWPMTSPLDREIDKYCRSVLLNRKPQLVDLSVEIK---GEIRDIFLWIIPLNNAEQGLLG 717

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
              DIS+ K  + +L  A+  AE  +  KS FLA +SHE+RTP+ AI+G  E+       
Sbjct: 718 GWLDISQRKTVERQLEAARVEAESANRTKSTFLATISHELRTPMYAIMGLLELEIRS--- 774

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
               P   +    + +S   ++ +++D++D +KIE+G++++H   V   + +    +L Q
Sbjct: 775 --NRPVEKDTLVTVSKSAQSLMLLLDDIIDSAKIEAGQLSIHPTAVDFHQEMERMFTLYQ 832

Query: 677 LYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSN 734
             ANE+ +       ++IP + +AD+  V+Q+  N+L NA+ FT  G   + I+   +  
Sbjct: 833 PIANERGLRFSGWLDDHIPPLLMADMLRVRQVMGNLLGNALKFTEQGSVSVDITWEPSDE 892

Query: 735 EEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
           +  +  + + DTG+G++        +PF Q    +  R  G+GLGL +   ++    GK 
Sbjct: 893 QHGVMNIDITDTGIGISPAAQATLFQPFSQANEGKSPRFGGSGLGLWICHQLIHKMGGKI 952

Query: 793 YIFSTPAKGTLIEIIFPL 810
            + S   KGT + I  PL
Sbjct: 953 ALESQLGKGTSLLITLPL 970


>gi|294661194|ref|YP_003573070.1| hypothetical protein Aasi_1629 [Candidatus Amoebophilus asiaticus
            5a2]
 gi|227336345|gb|ACP20942.1| hypothetical protein Aasi_1629 [Candidatus Amoebophilus asiaticus
            5a2]
          Length = 2279

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 94/565 (16%), Positives = 195/565 (34%), Gaps = 59/565 (10%)

Query: 292  LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLL 351
            ++N   +    L      ++    +   + T  T+ K P+  + +    +          
Sbjct: 1556 IENAGAQQGAVLFVEAGDTVVVQAEYASDNTITTLQKIPLADWEHGAHTVIQYVKRLHQS 1615

Query: 352  TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL------HTIQW 405
                    ++ A         P ++   A   + +    +T + A   L      H    
Sbjct: 1616 V------VLDNATIHEQFKIDPYINRTQAKSILCIPLLKQTELRAILYLENNLMTHAFTP 1669

Query: 406  NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ-----LCSILEA 460
                ++ +       + +    + +     + +  +  +RK+  E +      L   LEA
Sbjct: 1670 EHMQTVLILTAQIAISLENARYVAEQLALTQQLAEQSTRRKIAEESLHVVTHDLKLALEA 1729

Query: 461  TSDGIA--IINREGIILSTNRAVSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEI 516
            +  G     I+   ++   +  +  LFG   +      +     +           +   
Sbjct: 1730 SQAGTWSWWIDSNKVV--WDATMYALFGLTPDTFRGTFEEVRERVHPEDKEQFEKNIDNC 1787

Query: 517  LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---YSLTMHDISEWKQEKNKLSH 573
            +      +++   +     + +++    + +   S      +    DI+E K+ +     
Sbjct: 1788 VKQSTPHSIDYRVIWPDGSQHMITAHGQVYRDTTSGSPIKMTGVCLDITERKKLEQDRLE 1847

Query: 574  AKKIAEKESSHK-----------SDFLARVSHEIRTPLTAIIGFSEVI---------KNQ 613
            A + A+++   +            +F+  V HEIR P+  I      +           +
Sbjct: 1848 ALQQAKEKEQQRADEAERYFKQQEEFINTVCHEIRNPMNGISNTVVFLEEKITSLKKLKE 1907

Query: 614  RFGPLGNPRYIEYA-------NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
                   P   E           I    N  L ++N +L++S++E+GK  L  +P     
Sbjct: 1908 SLPGSFQPELKELLPTLEEDIQTIQHCVNHQLVVINGVLNLSRLEAGKEKLLLKPFKPKT 1967

Query: 667  AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG-QI 725
             + E+I L       K++ +          I  D    K I +N++SNAI FT  G  +I
Sbjct: 1968 IIEESILLFTSQLKTKQLNLIIDLPKQAIAIQGDPERFKMILINLISNAIKFTEKGHIKI 2027

Query: 726  IISTTHTSNEEV--ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
               T    +  V  ++RV DTG+GMT  E     + F +       + EG+GLGL ++K 
Sbjct: 2028 SFQTQAVDSTHVELVIRVEDTGIGMTPEEQSCLFQRFSR---PLSSQYEGSGLGLAISKK 2084

Query: 784  MVDANMGKFYIFSTPAKGTLIEIIF 808
            ++D   G   + S   +G+   I  
Sbjct: 2085 LLDLMGGTIQVDSVKGQGSTFTIHL 2109


>gi|298491151|ref|YP_003721328.1| histidine kinase ['Nostoc azollae' 0708]
 gi|298233069|gb|ADI64205.1| histidine kinase ['Nostoc azollae' 0708]
          Length = 613

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 87/342 (25%), Positives = 161/342 (47%), Gaps = 9/342 (2%)

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
            A  +L      +  +      L  ++  VM   +         +          +    
Sbjct: 132 DAAIRLEDLQQMERQKPRIAWPLVDDSRDVMAWLIIATAKPRDHREQIHPLQIQLRS--- 188

Query: 539 LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
              ++I K +   +     +  I  W+Q   +L++  +  E+ +  K+ FLA  SHEIRT
Sbjct: 189 ---QLITKTIQHFNTALAQLRQIQFWQQRCQQLANFNQELERTNQLKNQFLANTSHEIRT 245

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
           PL++IIGF+ ++  Q + P    R+ EY + I  SG  +LD++ND+LD+SKIE+ ++ + 
Sbjct: 246 PLSSIIGFTHLLLAQGYEPE-RQRHQEYLHIIQSSGKHLLDLINDILDLSKIEANQLEVQ 304

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718
           +E V +       ++LV+  A  K + +R    N++  ++ D   +KQ+ LN+L NA+ F
Sbjct: 305 WEIVEVSTLCRNVLALVKEKAANKGLKLRLEIENDVTNLVVDPLRLKQMLLNLLFNAVKF 364

Query: 719 TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
           T  G  + +  +      +   V DTG+G++     +  +P+ QI N      EG+GLGL
Sbjct: 365 TNLGS-VGLRVSIKDL-YLRFSVWDTGIGISQENQTRLFRPYSQIINPGAGSNEGSGLGL 422

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820
            + + + + + G   + S   +G+   I+ PL       + I
Sbjct: 423 VVTQQLAEIHGGYLELESAIDQGSCFTIVLPLKPQGRASEAI 464


>gi|148554082|ref|YP_001261664.1| multi-sensor hybrid histidine kinase [Sphingomonas wittichii RW1]
 gi|148499272|gb|ABQ67526.1| multi-sensor hybrid histidine kinase [Sphingomonas wittichii RW1]
          Length = 829

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 101/567 (17%), Positives = 203/567 (35%), Gaps = 23/567 (4%)

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
            +     +   +L     +       ++  +   T Q     S        +   SA  D
Sbjct: 38  GESRRSEATRQALQSSFVYQREVERLFSLIKDAETGQRGYLISGSPAFLGPYDDASAKID 97

Query: 317 EGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLT-KYKSVDDIEIAGGLSTLLDAPKL 375
                                   L  A  + +      +     E A          + 
Sbjct: 98  AQVRQVERLRPDYADDMQFARLKQLIAAKFAEMRQVIDMRDRTGPEAAAVRLRQGLGKRQ 157

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
            D+       +       +A   R    +  R  ++  + I F                 
Sbjct: 158 MDSIRSIIGEMEAQADREVAELQRHQAERLARNRTIIWSAIGFIAVIAGLLGFLLGRGRR 217

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
            +        +         +I ++ +DGI +IN  G I + N A  ++FGY  E +LR+
Sbjct: 218 TNNRLAFEHHEAAARQ---RAIFDSATDGIILINPSGSIETINHAAERMFGYSAEQLLRR 274

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSC 553
             +  ++    +        I    L++T      G  ++ + + + +++    LP    
Sbjct: 275 DISTLVDIAPGNGAFLERLGIRDGQLQKTELIDLTGRDRQGEPVPVDVVLGTMPLPDGIH 334

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
               + D +  K+                  K DF++ VSHE+RTPLT+++G   ++++ 
Sbjct: 335 IVAALRDAAGRKEI--------------DRLKDDFISTVSHELRTPLTSVVGSLTLLRSG 380

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
             G L        A   + +   ++ ++ND+LDI +I  G+M   +  + L + +++A  
Sbjct: 381 AAGQLPAEAQR-LAEIAETNSQRLIRLINDILDIDQIRKGRMAFEYAVIDLRDVMTKAAH 439

Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
            +Q  A+ + I I T   +      AD   + Q+A N+LSNA+ F+P    +        
Sbjct: 440 AMQGLADRRSIRIETLMPSTPVMACADADRLVQVAGNLLSNAVKFSPEEATVRFELIEGR 499

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
           ++ V +++ D+G G+           F +     +    GTGLGL +++ +V ++ G+  
Sbjct: 500 DDHV-IQITDSGPGIPAEFANNIFHRFARGSQPSRQIIAGTGLGLAISREIVRSHGGEIS 558

Query: 794 IFSTPAKGTLIEIIFPLYDTSHPHDCI 820
             +    G       P  DT+   + I
Sbjct: 559 FENRAEGGARFAFSIP-RDTTQASEAI 584



 Score = 40.8 bits (94), Expect = 0.89,   Method: Composition-based stats.
 Identities = 73/607 (12%), Positives = 176/607 (28%), Gaps = 80/607 (13%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147
           I+  G ++ I+    +  G  A +++     D+S ++ I P N    + L  ++    KT
Sbjct: 247 INPSGSIETINHAAERMFGYSAEQLLRR---DISTLVDIAPGNGAFLERLGIRDGQLQKT 303

Query: 148 TLWPIEGTNLY-----VPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
            L  + G +       V + L  +P+           G  IV   R     + + +  D 
Sbjct: 304 ELIDLTGRDRQGEPVPVDVVLGTMPLPD---------GIHIVAALRDAAGRKEIDRLKDD 354

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
             S +    +   +       +    +         +++ + E  + +   L  +   + 
Sbjct: 355 FISTVSHELRTPLTSVVGSLTLLRSGAAGQLPAEAQRLAEIAETNSQRLIRLINDILDID 414

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
              +  +  +     +             L +      E L         A  D    + 
Sbjct: 415 QIRKGRMAFEYAVIDLRDVMTKAAHAMQGLADRRSIRIETLMPSTPVMACADADRLVQVA 474

Query: 323 PETVDKCP----------IPFFVYSHGNLF------------YANPSFLLLTKYKSVDDI 360
              +                       ++             +AN  F    +       
Sbjct: 475 GNLLSNAVKFSPEEATVRFELIEGRDDHVIQITDSGPGIPAEFANNIFHRFARGSQPSRQ 534

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC-----IAASARLHTIQWNRENSLAMTF 415
            IAG    L  + ++  ++  +     R++        I       +      ++  +  
Sbjct: 535 IIAGTGLGLAISREIVRSHGGEISFENRAEGGARFAFSIPRDTTQASEAIEIGSARLLIC 594

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG--I 473
                A +  +++        D  T + +           +IL   +    + + +G  +
Sbjct: 595 EDDADAGRTVQSILTAHGYASDHVTTMREAIAHARSQPYAAILLDMT----LADADGSDV 650

Query: 474 ILST-N------RAVSKLFGY-PVEDILRKPFTVFLE-QNTPSVMNHYLTEILSLDLRQT 524
           I +  N        +  + G  P  DI  +P+  +L+    P  +   +   +    +  
Sbjct: 651 IRAITNDPGTGKPPIIVISGIAPPADIDHQPYAGWLQKPFDPRRLIQLIQRAIRRQGQS- 709

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
            + + L    +     L              L    +S  +   ++      + +     
Sbjct: 710 -KAVILHIDDDGDTRELFAAAL---AGRGLLLNATSLSSARAILDERRPDAIVLDLGLPD 765

Query: 585 KSDFLARVSHEIRT---PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL-DI 640
            S  LA +S EI++   PL  I+  ++ +         +      A+ +       L  +
Sbjct: 766 GSG-LALLS-EIKSWDKPLPVIVYSAQEM---------DEETRRLADAVLVKSRRALPKL 814

Query: 641 VNDLLDI 647
            + +LDI
Sbjct: 815 TSTVLDI 821


>gi|296387528|ref|ZP_06877003.1| putative two-component sensor [Pseudomonas aeruginosa PAb1]
          Length = 981

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 107/604 (17%), Positives = 227/604 (37%), Gaps = 26/604 (4%)

Query: 225 FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYT 284
              Q  P       ++  L    A    + ++ K   +     S            +   
Sbjct: 336 LHFQVTPRSGGFPEQIGVLARKEADLAIMSRSSKREEMLRFTRSFLSTSYVLVTRADDKG 395

Query: 285 KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY- 343
           + +  G+L                     Y           +D   +  +          
Sbjct: 396 RAESPGSLDGKRIAIPAG-HVGMQQVRERYPQASMVEVGVALDAMNL-VYEGRADAAVVP 453

Query: 344 -ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT 402
                + ++  ++    I     +        +   +A    +L ++  +          
Sbjct: 454 LVTARYYIVRLFRERLAIADLVPIGAATAHFAVRRGDAELQSILDKALLSISPDDLSDIV 513

Query: 403 IQWNRENS----LAMTFIPFEKANQFPENMPQNGIEPEDV-------DTRINKRKMEIEV 451
            +W           + +I                                  ++ +  ++
Sbjct: 514 NRWRSPPGMSGQTWVDYILVITEILAIAAALLLFCLGWVTYQRRQIRARARVEQALSDQL 573

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
             + ++ +     + + +  G +LS NR+  +  G   E+++ +       +N  +    
Sbjct: 574 RFVEALTDCMPPPLYVRDVNGRMLSCNRSYLQSVGLSSEEVMNRTVLELPMENFETAPEF 633

Query: 512 YLTEILSLDLRQTLEKIT-LGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEK 568
           + + ++++   +T+E +  +     E+ +   I   +              DI+E +Q  
Sbjct: 634 HRSYLMAMREGRTIEAVYPVALGGRERWIDHWIQPFRDSSGTIRGVICGWLDITEHRQLI 693

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
           ++L  AK +A++ S  K+ FLA +SHEIRTP+ A+IG  E+   +      +        
Sbjct: 694 DELEEAKNLADEASRAKTTFLATMSHEIRTPMNAVIGILELALKRAETGRVD---RSSIE 750

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
               S   +L+++ D+LDI++IESG+++L  +  +L E V     + +  A +KR+ +  
Sbjct: 751 IAYASAKSLLELIGDILDIARIESGRLSLSPKRANLRELVESVARVFEGLARQKRLSLVL 810

Query: 689 SFANNI-PRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNE--EVILRVRDT 744
              ++I   +L D    KQI  N++SNAI FT  G  +I I          +V L V DT
Sbjct: 811 EIDSSINGDVLLDAMRFKQILSNLVSNAIKFTDEGSIRIRIDGRQVEPSLLQVNLCVEDT 870

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G++  + ++  +PF Q+  + Q   EGTGLGL +++++ +   G+  + S   +GT I
Sbjct: 871 GIGISLGDQQQLFRPFAQVNRNLQ-NTEGTGLGLVISRSLCEMMGGRLVMSSELGQGTRI 929

Query: 805 EIIF 808
           ++  
Sbjct: 930 DVEL 933



 Score = 48.1 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 64/243 (26%), Gaps = 11/243 (4%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D +G +   +    +++G  + +++   + ++               L           +
Sbjct: 591 DVNGRMLSCNRSYLQSVGLSSEEVMNRTVLELPMENFETAPEFHRSYLMAMREGRTIEAV 650

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFR-GFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           +P+        ID    P    +    G   G+  +  +R   D     K L  + S   
Sbjct: 651 YPVALGGRERWIDHWIQPFRDSSGTIRGVICGWLDITEHRQLIDELEEAKNLADEASRAK 710

Query: 209 EIKKGHSSVE--KEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
                  S E       +              +V   +   A+       E    +    
Sbjct: 711 TTFLATMSHEIRTPMNAVIGILELALKRAETGRVDRSSIEIAYASAKSLLELIGDILDIA 770

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
                +       L+   K+     L  +    FE L+ +   SL    D   N     +
Sbjct: 771 RIESGR-------LSLSPKRANLRELVESVARVFEGLARQKRLSLVLEIDSSING-DVLL 822

Query: 327 DKC 329
           D  
Sbjct: 823 DAM 825


>gi|254420881|ref|ZP_05034605.1| PAS fold family [Brevundimonas sp. BAL3]
 gi|196187058|gb|EDX82034.1| PAS fold family [Brevundimonas sp. BAL3]
          Length = 1245

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 101/850 (11%), Positives = 217/850 (25%), Gaps = 135/850 (15%)

Query: 69   DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID 128
            DSE  F            W  D  G ++  +  L    G  A  + G             
Sbjct: 277  DSETRFRLLADTAPSP-IWLTDVDGAVEFANIALTDFYGGTAASLSGHGWKQTIHPDD-Q 334

Query: 129  PNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRG--FGIVHV 186
            P         R +                +  + +A  P + +   F G+ G  F     
Sbjct: 335  PQVEAAQAGARPDLRPYGFEARFRRHDGAWRWMRVAVEPRFDKAGVFLGYAGISFDTTEN 394

Query: 187  NRVDNDPRALGK------RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV 240
                       +       L  +   L +       VE     + +           +  
Sbjct: 395  REALETAARAQRQQAFLLALSDRLRDLSDPGLIMREVEASIGRLIAADRVGYGEIDPDSG 454

Query: 241  SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFH------------------------ 276
                      DD    +   L    E  + +                             
Sbjct: 455  LISVTSQWTADDGAVRDSISLDAFGEGLIADLAQGRTVRIDDVYEDPRTADVAGAFDAIG 514

Query: 277  ---------------------TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
                                   +  +   +     L+  +  ++  +            
Sbjct: 515  TRALIRAPLIRAGRLRAFLFAHASGPRRWTEAEARLLEEVAARTWTEV---ERARAETQT 571

Query: 316  DEGENLTPETVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
             E E       D  P+  +V        + N +++        +    A   S+L     
Sbjct: 572  RESEERFRAIADTAPVLIWVTDQDRQRSFVNQAYVDFFG-ADYESARAADWRSSLHPDDV 630

Query: 375  LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
                  ++      +     +  AR    + +      +      +       +   G+ 
Sbjct: 631  ---ARIVQESANGEATGQPFSMEAR---YRRHDGEWRWLKSFSRPRLTGQA-VVGFVGVA 683

Query: 435  PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
             +  D R  + ++    ++  ++ ++    I + +    I+  N+      G      L 
Sbjct: 684  FDVTDMREAQARLTESEVRFRTVADSAPALIWMTDATPSIIFGNKRYRIFCGIRSNRQLA 743

Query: 495  KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--S 552
              +   +  +  +V +           R          T   + +    + +        
Sbjct: 744  DAWRRLIHPDDETVFDAAFARAFQARDRFEALSRVNHPTLGLRWIRTEGVPRFDASGVFQ 803

Query: 553  CYSLTMHDISEWKQEKNKLSHAKK--------------------IAEKESSHKSDFLARV 592
             Y     D+++ K+ ++ L    +                    +  +           V
Sbjct: 804  GYVGASLDVTDAKRAEDDLKRINELLEDRVAEALTEKAAAEAHLMHAQRMEAVGRLTGGV 863

Query: 593  SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
            +H+    LT +IG  ++I           +  +       +      + + LL  S+ ++
Sbjct: 864  AHDFNNLLTVVIGALDIILRSD----DPAKKKKLGEAALAAARRGESLTHQLLAFSRRQA 919

Query: 653  GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712
                L  E + L+  + E   L++  A  + +  +        R   D    +   LN++
Sbjct: 920  ----LRPEAIDLNGLIREGEPLLR-RAVGEAVDFKVKLKRGGVRANVDPAQFEAALLNLI 974

Query: 713  SNAIHF----------------------TPSGGQIIIST-----------THTSNEEVIL 739
             NA                            G +I + T                + V +
Sbjct: 975  VNARDALGDVTGGPMRDGAPMGAPPAAQVREGARITVQTMTCSVEPGQVAELAPGDYVCV 1034

Query: 740  RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
             V D G GM    +++  +PF          G+GTGLGL         + G  +I ST  
Sbjct: 1035 SVSDNGSGMPAEVIDRVFEPFFTTKP----VGKGTGLGLSQVYGFARQSGGGVHIASTVG 1090

Query: 800  KGTLIEIIFP 809
            +G+ I +  P
Sbjct: 1091 RGSEIRLYLP 1100



 Score =  111 bits (278), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 40/536 (7%), Positives = 109/536 (20%), Gaps = 57/536 (10%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            W  D  G +  ++ +  +                       D    +      ++    
Sbjct: 168 LWMTDETGRIIHLNND-QRLFWGGLDDPSDFDADAFLHPDDRDHVLSVCRQ-ADRDHVAY 225

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
                       +  +   A P  + +  F G  G  I           A  +  + +F 
Sbjct: 226 VVEGRHRRHDGEWRVLRSEARPRLNADGRFMGMIGVNI--DVTEARAAEAALRDSETRFR 283

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSP----PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
            L +       +      +                        +     D          
Sbjct: 284 LLADTAPSPIWLTDVDGAVEFANIALTDFYGGTAASLSGHGWKQTIHPDDQPQVEAAQAG 343

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
              +      +  F   +      +       + +     Y       + +    E    
Sbjct: 344 ARPDLRPYGFEARFRRHDGAWRWMRVAVEPRFDKAGVFLGYAGISFDTTENREALETAAR 403

Query: 322 ----------TPETVDKCPIPFFVYSH-----GNLFYANPSFL----------------- 349
                       + +     P  +        G L  A+                     
Sbjct: 404 AQRQQAFLLALSDRLRDLSDPGLIMREVEASIGRLIAADRVGYGEIDPDSGLISVTSQWT 463

Query: 350 ----LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL---HT 402
                +    S+D     G ++ L     +  ++  +            A   R      
Sbjct: 464 ADDGAVRDSISLDAFGE-GLIADLAQGRTVRIDDVYEDPRTADVAGAFDAIGTRALIRAP 522

Query: 403 IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV----DTRINKRKMEIEVMQLCSIL 458
           +         +                             +    + +      +  +I 
Sbjct: 523 LIRAGRLRAFLFAHASGPRRWTEAEARLLEEVAARTWTEVERARAETQTRESEERFRAIA 582

Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
           +     I + +++      N+A    FG   E      +   L  +  + +        +
Sbjct: 583 DTAPVLIWVTDQDRQRSFVNQAYVDFFGADYESARAADWRSSLHPDDVARIVQESANGEA 642

Query: 519 LDLRQTLEKITLGSTKEEKLLSL-RIIIKKLPFSS--CYSLTMHDISEWKQEKNKL 571
               Q           + +   L      +L   +   +     D+++ ++ + +L
Sbjct: 643 TG--QPFSMEARYRRHDGEWRWLKSFSRPRLTGQAVVGFVGVAFDVTDMREAQARL 696



 Score = 87.8 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 25/271 (9%), Positives = 72/271 (26%), Gaps = 15/271 (5%)

Query: 313 AYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
           A  DE E       +  P+  ++    G + + N    L                S    
Sbjct: 148 ARIDETEGRLQIVSELAPVMLWMTDETGRIIHLNNDQRLFWG--------GLDDPSDFDA 199

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
              L  ++    + + R       A       + +      +      + N     M   
Sbjct: 200 DAFLHPDDRDHVLSVCRQADRDHVAYVVEGRHRRHDGEWRVLRSEARPRLNADGRFMGMI 259

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
           G+  +  + R  +  +     +   + +     I + + +G +   N A++  +G     
Sbjct: 260 GVNIDVTEARAAEAALRDSETRFRLLADTAPSPIWLTDVDGAVEFANIALTDFYGGTAAS 319

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
           +    +   +  +    +             +           +     +R+ ++     
Sbjct: 320 LSGHGWKQTIHPDDQPQVEAAQAGARPD--LRPYGFEARFRRHDGAWRWMRVAVEPRFDK 377

Query: 552 SCYS----LTMHDISEWKQEKNKLSHAKKIA 578
           +           D +E ++     + A++  
Sbjct: 378 AGVFLGYAGISFDTTENREALETAARAQRQQ 408


>gi|299146759|ref|ZP_07039827.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
 gi|298517250|gb|EFI41131.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
          Length = 869

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 93/536 (17%), Positives = 184/536 (34%), Gaps = 33/536 (6%)

Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANP 346
               ++ N +ES   +  +    +     E  N               Y    ++ + N 
Sbjct: 349 IVWLMRANRRESKRRIQAQTRLLVQNKLVEQRNEFDNVFHSIRDGVITYDTDLHIHFTNR 408

Query: 347 SFLLLTK--YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
           S L +    Y+S           ++        +   K +    S    +         +
Sbjct: 409 SLLQMLHLPYESGGRFYEGMMAGSIFKIYYNGQDILHKMLKQVASKGESVKIPQGAFMKE 468

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
            + +    ++       ++               +        E++       ++ +S  
Sbjct: 469 VHSDKYFPVSGEIVPIRSKDTITGMALSARNISNE--------EMQKRFFDMAVDESSIY 520

Query: 465 IAIINREGIILSTNRAVSKLFGYPVE--DILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522
               + E       +   K  GY      I R      +  +    ++      L     
Sbjct: 521 PWQFDMETNCFIFPQGFLKRLGYDESVTTISRDEMDRTIHPDDLKEISPLFNRAL-TGED 579

Query: 523 QTLEKITLGSTKEEKLLSLRII---IKKLPFSSCY--SLTMHDISEWKQEKNKLSHAKKI 577
                         +          I  L   S Y        I  +K  + ++  A+  
Sbjct: 580 SNTRLNFRQRNVNGEYEWWEYRSSVITGLTQDSLYNILGVCQSIQRYKTAEQEMREARDK 639

Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
           A +    KS FLA +SHEIRTPL AI+GFS+++ +       +    ++   I+++  L+
Sbjct: 640 ALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDT--SGFTSEEIAQFIGTINKNCGLL 697

Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN-NIPR 696
           L ++ND+LD+S+IESG M   F   +L   +       +L      + +       +   
Sbjct: 698 LALINDILDLSRIESGTMEFMFAEHNLPLLLKTVHDSQRLNMPP-GVELVLRMPESDKIY 756

Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN---EEVILRVRDTGVGMTNYEL 753
           +  D   ++Q+  N+++NA  FT SG    I+  +  +       + V DTGVG++   +
Sbjct: 757 LTTDNVRLQQVVNNLINNAAKFTSSG---FITFGYEDDEVPGYTRIFVEDTGVGISEEGI 813

Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
               + F ++ N      +G GLGL + + +++   G   + S   KGT   +  P
Sbjct: 814 RHIFERFYKVDNFT----QGAGLGLSICQTIIERLNGTISVTSEVGKGTRFTVRLP 865


>gi|94268677|ref|ZP_01291254.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
 gi|93451507|gb|EAT02332.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
          Length = 706

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 83/634 (13%), Positives = 192/634 (30%), Gaps = 45/634 (7%)

Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD 252
           P A    L++             +  +      S         +  +     +  A++  
Sbjct: 104 PLATMINLERGEPVRGFGGVILVASHRHDIQDLSDLKGKTIASVTRRSLGGYQTQAYELL 163

Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
               +    +   E+ +P       +   +         +        +          S
Sbjct: 164 KQGIDPERDIVLLETEMPHDAAVEAMLSGRADAAMARSGIMEEMIAEGKLDPEAVRILRS 223

Query: 313 AYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                              P +                L    ++  +   G +S     
Sbjct: 224 RPEPGFPF-------ALSTPLYPEWPFAALAHTDEQTALLVASALYALPHGGTVSRASAI 276

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
              +     +PV     +               +      +  +    A      +    
Sbjct: 277 HGFTVPADYRPVEELMRELRLPPFDQAPRFTLHDAWQRWTIPLVGALVAVGLISLLSLAL 336

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSI--LEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490
                        + +     L ++  L +  +G+  ++  G     N +   + G   E
Sbjct: 337 YW----------ARRQAHREYLRTLNLLASLGEGVYGVDLHGSCTFINSSALAMLGCNEE 386

Query: 491 DILRKPFTVFLEQ-----NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
           ++L +                   +  +++ L     + LE+       +     + +++
Sbjct: 387 EVLGRDQHQLFHHHTAAGEPYPAQDCPISQTLEDGRPRRLEEWFWHRNGQG--FPVNLVV 444

Query: 546 KKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
             L              DIS+ K  + +L        + ++    F   VSH++R PL  
Sbjct: 445 TPLYEGRQLVGVVAAFQDISDRKAVEVEL-------RRSNADLEQFAYVVSHDLRQPLRM 497

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           I G+   +  +      +    E  ++       +  ++  LL+ S++  G+      P+
Sbjct: 498 INGYM-GLLERALNDKLDDETREMMDFAAGGARRMDQMLVSLLEYSRV--GRKGEPMAPL 554

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
           +  EAV EA+  ++   NE    +R   +   P ++A      ++  N++ NA+ +   G
Sbjct: 555 ASREAVEEALEFLEPAINEANATVR--ISGQWPELIASRDEFTRLWQNLIGNALKYRAPG 612

Query: 723 GQIIISTTHTSNEE-VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
               I    T+        ++D G+G+   + ++  K F ++    + + EGTG+GL + 
Sbjct: 613 RTPEIDLAVTAKGSFWEFTIKDNGIGIDPAQTDRLFKVFQRLH--TRDKYEGTGVGLAVC 670

Query: 782 KAMVDANMGKFYIFST-PAKGTLIEIIFPLYDTS 814
           + +V+ + G     S    KGT      P+  TS
Sbjct: 671 RKIVERHGGTITAESEGDGKGTTFRFTLPIQHTS 704



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/250 (11%), Positives = 66/250 (26%), Gaps = 15/250 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD------ILHIDPNNHIGDLLKR 139
            + +D HG    I+      +G    +++G     +          +   +  I   L+ 
Sbjct: 361 VYGVDLHGSCTFINSSALAMLGCNEEEVLGRDQHQLFHHHTAAGEPYPAQDCPISQTLED 420

Query: 140 QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199
                 +   W   G     P++L   P+Y       G +  G+V   +  +D +A+   
Sbjct: 421 GRPRRLEEWFWHRNG--QGFPVNLVVTPLY------EGRQLVGVVAAFQDISDRKAVEVE 472

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
           L +  + L +     S   ++   + +         + +K+   T               
Sbjct: 473 LRRSNADLEQFAYVVSHDLRQPLRMINGYMGLLERALNDKLDDETREMMDFAAGGARRMD 532

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
            +L S                   +++     L+       E  +               
Sbjct: 533 QMLVSLLE-YSRVGRKGEPMAPLASREAVEEALEFLEPAINEANATVRISGQWPELIASR 591

Query: 320 NLTPETVDKC 329
           +         
Sbjct: 592 DEFTRLWQNL 601


>gi|292492324|ref|YP_003527763.1| phosphate regulon sensor kinase PhoR [Nitrosococcus halophilus Nc4]
 gi|291580919|gb|ADE15376.1| phosphate regulon sensor kinase PhoR [Nitrosococcus halophilus Nc4]
          Length = 436

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 80/401 (19%), Positives = 155/401 (38%), Gaps = 34/401 (8%)

Query: 421 ANQFPENMPQNGIEPEDVDTRINKR----KMEIEVMQLCSILEATSDGIAIINREGIILS 476
                E     GI  E    R   R    K+   + +      A  D   ++N++  I  
Sbjct: 57  RAPPREVGIMEGIVREIDFMRQRHRSRKSKLSHHLKRFQKATAALPDATIVLNQDDEIEW 116

Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL-DLRQTLEKITLGSTKE 535
            N    +L G      + +  T  +       +      + S  +L   +          
Sbjct: 117 ANEVSRRLLGLKSPWDVGQRITNLIRHPDFVELMALGRNVASTVELPSPINPELH----- 171

Query: 536 EKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
                L I +          L + DI+   + +                + DF+A VSHE
Sbjct: 172 -----LNIRMVPYGQGQR-LLVVRDITRLHRLE--------------RMRRDFVANVSHE 211

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           +RTPLT + G+ EV+  +  G      ++     +      +  ++ DLL +S++E+   
Sbjct: 212 LRTPLTVLRGYLEVL--EGGGNGNPEVWVRSFKTMQDQVARMQHLIEDLLMLSRLENRNK 269

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715
                PV++ E +       ++ + +++  IR     ++  +  D R +     N++ NA
Sbjct: 270 KPAEVPVAVPEMLEGICREARMLSGDRQHQIRLKAETSL-WLRGDERELHSAFSNLVVNA 328

Query: 716 IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           I +TP+ G I +     ++ +  L VRDTG G+    L +  + F ++   +     GTG
Sbjct: 329 IRYTPAQGSITLHWFKQAD-QPCLEVRDTGEGIAAEHLPRLTERFYRVDKGRSREKGGTG 387

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           LGL + K +++ +  +  + S   KG++   +FP   +  P
Sbjct: 388 LGLAIVKHVLNHHEARLEVESELGKGSVFRCLFPAERSHRP 428


>gi|291566274|dbj|BAI88546.1| two-component sensor histidine kinase [Arthrospira platensis
           NIES-39]
          Length = 709

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 103/598 (17%), Positives = 197/598 (32%), Gaps = 84/598 (14%)

Query: 278 INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV-Y 336
           +   +   +     L        +Y       +     +           +      +  
Sbjct: 120 LTGREVWLETTIVPLMKTGATPEKYWVVTQDITERKAIELELTQLSWVASQTDNAVIICD 179

Query: 337 SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA 396
            HGN+ + N +F  +T Y   +   +  G  + L  P    ++A     +    +     
Sbjct: 180 RHGNIEWVNEAFTWITGYTLAEVNGLTPG--SFLQGPL---SDAETIDQIRTCLKEHKPY 234

Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
              L   + N      ++       N   +      IE +  D +  +  +    ++  S
Sbjct: 235 RGELLNYKRNGTPY-WLSISITPIFNHQGDLTKFIAIETDISDRKQIEEALRQSEVRNRS 293

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           ++EA  D +  +NR G+ L    +         +++L K       ++      HYL   
Sbjct: 294 LIEAIPDLMFRLNRGGVFLDYFPSKDDRV-TQSKEVLGKTVEEVFSEDLAWWTRHYLELT 352

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKK 576
           L+    Q+ E +      EE   +      K          + DI++ K  +  L   ++
Sbjct: 353 LTSGQSQSGEYMLPF---EEGWRTYEARYVKSGDD-VVLAIVRDITDRKAIEAALLVEQQ 408

Query: 577 IAEKESSHK-----------------------SDFLARVSHEIRTPLTAIIGFSEVI--- 610
           + +++++                            +A V+HEI  PL  I G    +   
Sbjct: 409 LEKQKAAQLEKALDKLQRTQTQLIQAEKLSSLGQMVAGVAHEINNPLAFIHGNLIYLDTC 468

Query: 611 ---------KNQRFGPLGNPRYIEYANYI----------------DRSGNLVLDIVNDLL 645
                       ++ P   P   E    I                    + + +IV  L 
Sbjct: 469 IKDIQYMLCMYHKYYPEPVPELKEAVADIDVDFLLDDLPKALESMKLGTHRIQEIVTSLR 528

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF---ANNIPRILADLR 702
           + S+++  KM      V L E +   + ++Q     K     T+       +PR+     
Sbjct: 529 NFSRLDEAKMK----AVDLHEGIESTLLILQNRLKAKAEQGETNIIRDYGELPRVECHAS 584

Query: 703 SVKQIALNILSNAIHF---TPSGGQIIISTTHTSNEE------VILRVRDTGVGMTNYEL 753
            + Q+ +N++SNAI      P+  +I I T     E       V++ + D G G+     
Sbjct: 585 QINQVFMNLISNAIDALENRPAPREITIRTRLEVAEYEENMDMVVVEISDNGPGIPESVR 644

Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM-VDANMGKFYIFSTPAKGTLIEIIFPL 810
           ++   PF          G+GTGLGL ++  + V+ + GK    S   KGT   I  PL
Sbjct: 645 QQIFNPFFTTKP----VGKGTGLGLAISHQIVVEKHGGKIEGISELGKGTRFIISLPL 698



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 26/166 (15%), Positives = 61/166 (36%), Gaps = 8/166 (4%)

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
            P          +   T+    + + E+  L  ++  T+ G  + ++ GI++  N A  +
Sbjct: 12  EPLVAAYQRAVADLTKTKQQLHESQQELWDLRQVVNRTTPGAWV-DQNGILVEINEAFIE 70

Query: 484 LFGYPVEDILRKPFTVFLEQN-TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
           +FGY  E+++ +P  +      +       +  ++               T   + + L 
Sbjct: 71  VFGYGAEELIGRPHPLLNSSCYSGDFWEEKVWSVVRSG--GIWRGELQNCTLTGREVWLE 128

Query: 543 IIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
             I  L  +      Y +   DI+E K  + +L+    +A +  + 
Sbjct: 129 TTIVPLMKTGATPEKYWVVTQDITERKAIELELTQLSWVASQTDNA 174



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/395 (10%), Positives = 106/395 (26%), Gaps = 37/395 (9%)

Query: 81  RTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP--NNHIGDLLK 138
           RT    W +D +G L EI+E   +  G  A ++IG     ++   +        +  +++
Sbjct: 48  RTTPGAW-VDQNGILVEINEAFIEVFGYGAEELIGRPHPLLNSSCYSGDFWEEKVWSVVR 106

Query: 139 RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
               W G+     + G    V ++   +P+         +  + +               
Sbjct: 107 SGGIWRGELQNCTLTGR--EVWLETTIVPLMKTGATPEKY--WVVTQDITERKAIE---L 159

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK-NKVSSLTEYYAHKDDVLKTE 257
            L +      +        ++     +  ++          +V+ LT     +  +   E
Sbjct: 160 ELTQLSWVASQTDNAVIICDRHGNIEWVNEAFTWITGYTLAEVNGLTPGSFLQGPLSDAE 219

Query: 258 KYPLLTS---EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS----HRNHPS 310
               + +   E      +   +  N   Y        + N+  +  ++++      +   
Sbjct: 220 TIDQIRTCLKEHKPYRGELLNYKRNGTPYWLSISITPIFNHQGDLTKFIAIETDISDRKQ 279

Query: 311 LSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPS-------FLLLTKYKSVDDIEI 362
           +     + E      ++  P   F +   G      PS          +      +    
Sbjct: 280 IEEALRQSEVRNRSLIEAIPDLMFRLNRGGVFLDYFPSKDDRVTQSKEVLGKTVEEVFSE 339

Query: 363 --AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
             A      L+    S  +     ML   +               + ++ +         
Sbjct: 340 DLAWWTRHYLELTLTSGQSQSGEYMLPFEEG----WRTYEARYVKSGDDVVLAIVRDITD 395

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
                  +       E    +    ++E  + +L 
Sbjct: 396 RKAIEAALLV-----EQQLEKQKAAQLEKALDKLQ 425


>gi|145598493|ref|YP_001162569.1| signal transduction histidine kinase [Yersinia pestis Pestoides F]
 gi|145210189|gb|ABP39596.1| signal transduction histidine kinase [Yersinia pestis Pestoides F]
          Length = 1333

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 89/378 (23%), Positives = 168/378 (44%), Gaps = 16/378 (4%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG---YPVEDILRKPF 497
           R   + +   ++Q  SI+ A    + I    G +   N   + +     Y + +   +P 
Sbjct: 595 RRQAKLLHARLLQQESIINALPFAVFIRTASGELAVYNSHFADVHSDKLYDMLNQTHEPA 654

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF-SSCYSL 556
              +       ++ Y   +L     Q ++           +  + + I  L         
Sbjct: 655 HWPMTSPLDREIDKYCRSVLLNRKPQLVDLSVEIK---GDIRDIFLWIIPLNNAEQGLLG 711

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
              DIS+ K  + +L  A+  AE  +  KS FLA +SHE+RTP+ AI+G  E+       
Sbjct: 712 GWLDISQRKTVERQLEAARVEAESANRTKSTFLATISHELRTPMYAIMGLLELEIRS--- 768

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
               P   +    + +S   ++ +++D++D +KIE+G++++H   V   + +    +L Q
Sbjct: 769 --NRPVEKDTLVTVSKSAQSLMLLLDDIIDSAKIEAGQLSIHPTAVDFHQEMERMFTLYQ 826

Query: 677 LYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSN 734
             ANE+ +       ++IP + +AD+  V+Q+  N+L NA+ FT  G   + I+   +  
Sbjct: 827 PIANERGLRFSGWLDDHIPPLLMADMLRVRQVMGNLLGNALKFTEQGSVSVDITWEPSDE 886

Query: 735 EEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
           +  +  + + DTG+G++        +PF Q    +  R  G+GLGL +   ++    GK 
Sbjct: 887 QHGVMNIDITDTGIGISPAAQATLFQPFSQANEGKSPRFGGSGLGLWICHQLIHKMGGKI 946

Query: 793 YIFSTPAKGTLIEIIFPL 810
            + S   KGT + I  PL
Sbjct: 947 ALESQLGKGTSLLITLPL 964


>gi|327189034|gb|EGE56220.1| putative two-component sensor histidine kinase/response regulator
           hybrid protein [Rhizobium etli CNPAF512]
          Length = 802

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 96/749 (12%), Positives = 220/749 (29%), Gaps = 89/749 (11%)

Query: 129 PNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIV---- 184
           P   + D L  +                  +P+ +   P        +GF    +     
Sbjct: 63  PELILLDALSPEGRGLEDCRRLKGNAVTRDIPVIIVVSP-QDEQTRIAGFAAGAVDCVSN 121

Query: 185 ------------HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP 232
                           +      L +R ++  + L  + +G    +++   + S      
Sbjct: 122 LVSAAELVARIKRHIELGAAQAHLRRRNEQLDTALASMGQGVCLFDEDGRLLLSNNRYAE 181

Query: 233 HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT- 291
              +   V    +       +         TS    L      +  +  Q   K+     
Sbjct: 182 VYGLDPAVIHPGQSLEDILKLRADVGAVPATSTSDYLAWAVATNMGDAPQDWIKELKTGQ 241

Query: 292 -LQNNSKESFE--------------------YLSHRNHPSLSAYFDEGENLTPETVDKCP 330
            ++   + + E                      +H                     +  P
Sbjct: 242 IIRGYHQRTPEGGWVSTHEDITQAWFAEKALAEAHAQAERAEQEARAAHARLLAAFEVVP 301

Query: 331 IPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389
               ++         N  +  L        ++       L    +               
Sbjct: 302 EGLVLFDAEDRFVLWNRRYEQLYAESGDMLVKGMRFEDRLRTGLECGQYPEA-----VGR 356

Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449
           ++  +      H    ++               +        GI  +  D       +++
Sbjct: 357 EQEWLEERLAHHAEPTSKHEQRLPGNRWIRIEERRISEGGSVGIRVDITD-------LKM 409

Query: 450 EVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
           +      + E     + + +RE    L  N+A    +GY +E  L               
Sbjct: 410 QEASFRLLFEGNPMPMWVYDRETLKFLHVNQAAIDHYGYRLEQFLTMTLRDIQAPQD--- 466

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQ 566
            +     +   +              +   + + +    L         + + D++E K+
Sbjct: 467 ADRATAAVFDAEDPAATTCSFRHLKADGGAIEVTVYSTCLNHKGKAASLMAVVDVTEAKR 526

Query: 567 EK-------------------------NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
            +                          +L    +  ++ +  +  F++  SHE RTPL 
Sbjct: 527 AEKALLQHRDTLEEMVRSRTVELARQTEELERMLEQEKQINELQRQFVSMASHEFRTPLA 586

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
            I G ++ +  ++          E A+ I  S + +L+++  +L   +++ G++ +  +P
Sbjct: 587 VIDGAAQRLIRRK-EAATPEFLAEKADQIRSSVSRMLELMESILAAGRLDHGRITIVPKP 645

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
            S+ E +    +  +  +  +              I  D  ++ Q+  N+ SNA+ + P 
Sbjct: 646 CSIAEIIETCSA--RQESIRRSHRFLLKLDELPETIYGDRPALDQVFSNLFSNAVKYAPD 703

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
              + +S      E V + VRD G+G+   +L K  + + +  +S  I   GTG+GL L 
Sbjct: 704 SPNVHVS-GWQEGERVCITVRDEGIGIDADDLPKMFQRYFRARSSTGIA--GTGIGLNLV 760

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           K +V+ + G   + S+   GT   +  P+
Sbjct: 761 KQIVELHGGTIDVASSRGNGTTFTLRIPI 789



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/402 (10%), Positives = 105/402 (26%), Gaps = 37/402 (9%)

Query: 90  DAHGYLKEISEELPKTIGNYAF--------KMIGMRLCDVSDILHIDPNNHIGDLLKR-- 139
           D  G L   +    +  G            + I     DV  +     ++++   +    
Sbjct: 167 DEDGRLLLSNNRYAEVYGLDPAVIHPGQSLEDILKLRADVGAVPATSTSDYLAWAVATNM 226

Query: 140 QNTWYGKTTLWP----IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA 195
            +              I G +   P            + +  F    +   +        
Sbjct: 227 GDAPQDWIKELKTGQIIRGYHQRTPEGGWVSTHEDITQAW--FAEKALAEAHAQAERAEQ 284

Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV-- 253
             +    +     E+      +   +            L  ++    +            
Sbjct: 285 EARAAHARLLAAFEVVPEGLVLFDAEDRFVLWNRRYEQLYAESGDMLVKGMRFEDRLRTG 344

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINL----NQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
           L+  +YP     E    E+   H         Q      +  ++         +  R   
Sbjct: 345 LECGQYPEAVGREQEWLEERLAHHAEPTSKHEQRLPGNRWIRIEERRISEGGSVGIRVDI 404

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYSHGNL--FYANPSFLLLTKYK-------SVDDI 360
           +     +    L     +  P+P +VY    L   + N + +    Y+       ++ DI
Sbjct: 405 TDLKMQEASFRL---LFEGNPMPMWVYDRETLKFLHVNQAAIDHYGYRLEQFLTMTLRDI 461

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYR--SDRTCIAASARLHTIQWNRENSLAMTFIPF 418
           +          A   +++ A          +D   I  +     +    + +  M  +  
Sbjct: 462 QAPQDADRATAAVFDAEDPAATTCSFRHLKADGGAIEVTVYSTCLNHKGKAASLMAVVDV 521

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
            +A +  + + Q+    E++       ++  +  +L  +LE 
Sbjct: 522 TEAKRAEKALLQHRDTLEEMVRSRTV-ELARQTEELERMLEQ 562



 Score = 46.6 bits (109), Expect = 0.018,   Method: Composition-based stats.
 Identities = 25/281 (8%), Positives = 65/281 (23%), Gaps = 22/281 (7%)

Query: 71  ENTFVFDPIPRTVRFTWNIDAH-GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP 129
           E +F        +   W  D        +++      G    + + M L D+      D 
Sbjct: 411 EASFRLLFEGNPMP-MWVYDRETLKFLHVNQAAIDHYGYRLEQFLTMTLRDIQAP--QDA 467

Query: 130 NNHIGDLLKRQNTWYGKT--TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187
           +     +   ++             +G  + V +    L    +           +V V 
Sbjct: 468 DRATAAVFDAEDPAATTCSFRHLKADGGAIEVTVYSTCLNHKGKAASLM-----AVVDVT 522

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ------SPPPHLRMKNKVS 241
                 +AL +  D     +       +   +E   +  Q+               ++  
Sbjct: 523 EAKRAEKALLQHRDTLEEMVRSRTVELARQTEELERMLEQEKQINELQRQFVSMASHEFR 582

Query: 242 SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301
           +           L   K        +   +Q       + +  +        ++ + +  
Sbjct: 583 TPLAVIDGAAQRLIRRKEAATPEFLAEKADQIRSSVSRMLELMESILAAGRLDHGRITIV 642

Query: 302 YLSHRNHP-----SLSAYFDEGENLTPETVDKCPIPFFVYS 337
                        S         +     +D+ P   +   
Sbjct: 643 PKPCSIAEIIETCSARQESIRRSHRFLLKLDELPETIYGDR 683


>gi|82703416|ref|YP_412982.1| PAS/PAC sensor signal transduction histidine kinase [Nitrosospira
           multiformis ATCC 25196]
 gi|82411481|gb|ABB75590.1| PAS/PAC sensor signal transduction histidine kinase [Nitrosospira
           multiformis ATCC 25196]
          Length = 670

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 100/595 (16%), Positives = 202/595 (33%), Gaps = 43/595 (7%)

Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302
           L       +   +    PL+   +  L  +      +   Y  + +        +  F  
Sbjct: 80  LEVEREFDETSFRALIDPLMKGGKEILVFEATHLRADGTHYPVEVHLELSTRPEQVQFLV 139

Query: 303 LS--HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDD 359
           ++          A     E      V+  P   ++    G+  + N  +   T     + 
Sbjct: 140 MAFDLTARRRAEAKLRANEARFRTMVNTIPQLAWIGETDGSRSWYNQRWYDYTGTTPEEM 199

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
           +   G     +  P+L      +      ++   +        ++               
Sbjct: 200 M---GWGWQKVHDPQLLPEVIKRWSEATAAE-QPLDMEI---PLRGADGELRVFLTRAEP 252

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
             N+  + +   G   +  D R+ +        +L  ++E  S+G+ I +    +L  N 
Sbjct: 253 LRNEDGQVVQWFGTNTDVHDQRLREEAQRETEKRLQVVMEHMSEGLIISDFNRNLLRWNP 312

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTP--------SVMNHYLTEILSLDLRQTLEKITLG 531
           A  ++      + +      F               +    LT IL  +    LE     
Sbjct: 313 AALRMHEIENAEEVFGSLHNFARIYELSTTEGNVVPIDQWPLTRILRGEHLHDLELRIRR 372

Query: 532 STKEE-KLLSLRIIIKKLPFSSCY-SLTMHDISEWKQEKNKLSHAK-----------KIA 578
             KE  ++ S    + +   S     LT+ DI+E KQ +  L  AK              
Sbjct: 373 LDKEWLRIFSYSGTVLRYENSKGLAFLTIKDITERKQAEEALRDAKVNLEYKVNERTAQL 432

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
             +S    +F   VSH++R PL  I G+S ++    +  L +     +   +  +   + 
Sbjct: 433 LAKSKELENFCYSVSHDLRAPLRGIAGYSRLLLENYYERL-DEEGRSFLTNVRSATKHMT 491

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
           D++ DLL  SK+E  +  L    + L   VS+ ++      N + + +  S  +    + 
Sbjct: 492 DLIEDLLSYSKLE--RRKLSSMVIRLPAFVSKVLAQFGD--NLQNVRLTVSMDD--FHVR 545

Query: 699 ADLRSVKQIALNILSNAIHFT--PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKA 756
           AD   +     N++ NA+ F+       I I    + +  + L VRD G+G      +K 
Sbjct: 546 ADPDGLAIALRNLVDNAVKFSIHAPEPTIEIRAWTSDSNCI-LCVRDNGIGFDMRFYDKI 604

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
            + F ++   +     GTG+GL + +  ++   G+ +  S    G +  +  PL 
Sbjct: 605 FEIFQRL--QRAEEYPGTGIGLAMVQKAMERMGGRVWAESQVGAGAVFYLQLPLS 657



 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/254 (8%), Positives = 58/254 (22%), Gaps = 17/254 (6%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK 146
           W  +  G     ++      G    +M+G     V D   +     I    +        
Sbjct: 173 WIGETDGSRSWYNQRWYDYTGTTPEEMMGWGWQKVHDPQLL--PEVIKRWSEATAAEQPL 230

Query: 147 TTLWPIEGTNLYVPIDL-AALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
               P+ G +  + + L  A P+ + + +    + FG               +  +K+  
Sbjct: 231 DMEIPLRGADGELRVFLTRAEPLRNEDGQVV--QWFGTNTDVHDQRLREEAQRETEKRLQ 288

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
            + E       +     ++         +        +     +   + +          
Sbjct: 289 VVMEHMSEGLIISDFNRNLLRWNPAALRMHEIENAEEVFGSLHNFARIYELSTTEGNVVP 348

Query: 266 ESSLP------------EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
               P             +     ++        Y GT+                 +   
Sbjct: 349 IDQWPLTRILRGEHLHDLELRIRRLDKEWLRIFSYSGTVLRYENSKGLAFLTIKDITERK 408

Query: 314 YFDEGENLTPETVD 327
             +E        ++
Sbjct: 409 QAEEALRDAKVNLE 422


>gi|253699905|ref|YP_003021094.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21]
 gi|251774755|gb|ACT17336.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21]
          Length = 642

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 91/517 (17%), Positives = 172/517 (33%), Gaps = 40/517 (7%)

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIP----FFVYSHGNLFYANPSFLLLTKYKSVDDIE 361
                L A   E E    +  +          F           P+   L      D   
Sbjct: 22  AARLELQAKNAELERARNDLENFLSCAWTATVFFDRELRPTRLTPTLAQLLDLSPAD--- 78

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                  LL       +       L       +     +     + +         F   
Sbjct: 79  ----TGELLRKLCRRLDWPSADAELRSVVGGAVVPEREVS----DLQTGHQFLLRLFPYL 130

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
           N   E         +  D ++  +++     +  ++ E T D I + +R    +  N+A 
Sbjct: 131 NAEGETEGAVLKLIDISDYKLADQRLL----EYRAVFECTGDMIYVFDRGYRFILANKAY 186

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
            +      E+++ +     L     + +   +    +       E       K  + + +
Sbjct: 187 LECHRVRHEELIGRTVRDLLGPAMFAEIKGRIDACFA-GEEVIFESRYDYPAKGVRDILI 245

Query: 542 RIIIKKLPFS-SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
                K        +  + D++E  Q + +L HA+K+              ++H+    L
Sbjct: 246 TYTPLKNGDRVDRVACLIKDMTERTQLEEQLRHAQKM-----EAIGTLAGGIAHDFNNLL 300

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
           T I G++ +I+    G          A  I  S     ++   LL  S+    K  ++  
Sbjct: 301 TVIAGYASLIQFNSQGS----EVASMAAEIQGSVERAAEMTRGLLAFSR----KQEVNLM 352

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720
           PV L++ V      ++    E  I +   F++    + +D   ++Q+  N++ NA    P
Sbjct: 353 PVDLNQLVEGLHKSLRRLITE-DIELAVEFSDAPLIVSSDKGQLEQVLFNLVVNARDAMP 411

Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
           SGG++ I T  +     ++ V DTGVGM+    ++A +PF            GTGLGL  
Sbjct: 412 SGGRLSIRTERSQLNHALITVADTGVGMSREVQDRAFEPFFTTKELGV----GTGLGLST 467

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
              ++  + G   + S P  GT+  I  PL     P 
Sbjct: 468 CYGIIKKHNGVIELQSEPGAGTVFSIYLPLS-AQQPE 503



 Score = 39.2 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 27/251 (10%), Positives = 56/251 (22%), Gaps = 11/251 (4%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL-HIDPNNHIGDLLKRQNTWY 144
            +  D        ++   +       ++IG  + D+       +    I      +   +
Sbjct: 170 IYVFDRGYRFILANKAYLECHRVRHEELIGRTVRDLLGPAMFAEIKGRIDACFAGEEVIF 229

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
                +P +G      I +   P+ + +R     R   ++             +   K  
Sbjct: 230 ESRYDYPAKG---VRDILITYTPLKNGDRV---DRVACLIKDMTERTQLEEQLRHAQKME 283

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
           +                  I    S        ++V+S+        +        LL  
Sbjct: 284 AIGTLAGGIAHDFNNLLTVIAGYASLIQFNSQGSEVASMAAEIQGSVERAAEMTRGLLAF 343

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
                        +N       +    L     E     S       S      + L   
Sbjct: 344 -SRKQEVNLMPVDLNQLVEGLHKSLRRLITEDIELAVEFSDAPLIVSSDKGQLEQVLFNL 402

Query: 325 TV---DKCPIP 332
            V   D  P  
Sbjct: 403 VVNARDAMPSG 413


>gi|158422717|ref|YP_001524009.1| sensor protein [Azorhizobium caulinodans ORS 571]
 gi|158329606|dbj|BAF87091.1| sensor protein [Azorhizobium caulinodans ORS 571]
          Length = 553

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 115/461 (24%), Positives = 193/461 (41%), Gaps = 10/461 (2%)

Query: 361 EIAGGLSTLLDAPKLSDNNAIKP--VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
           +   G  +L   P  + +  ++     L    R   AA   L  +       L +     
Sbjct: 71  DQRQGAGSLNAQPDAARSGRVRTSLRDLAGVGRHSAAALGALAFMCALAGGGLLLAAALG 130

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL-CSILEATSDGIAIINREGIILST 477
                 PE     G              + +   +L  S++      + +  R G +L  
Sbjct: 131 LSETGLPEGGWLLGCGLISAALSAVAAGLSLAAERLDRSMMGVDLALVTLHGRGGEVLGL 190

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
             A +     P +  L +     +           L+                   + E 
Sbjct: 191 EHADAARAHVPEDAWLGQGLFDRVLVPDRPAFLAALSTAAHGLSATESVCEVRLRCEGEG 250

Query: 538 ----LLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
                + + +                DI   K +  +   A+  AE+ +  KS FLA +S
Sbjct: 251 EAPDFVWMELRCVPAGEDRAR-AHWRDIHAVKIQLEEDHRARTEAERANLAKSRFLAAMS 309

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HE+RTPL  I+GFSE++       +   R  +YA  I  SG  +L +VND+LD+S++E+G
Sbjct: 310 HELRTPLNTILGFSELLATDTEQRIDARRKEDYARIIHESGQHLLGVVNDILDLSRVEAG 369

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713
              L FE + +   V   + +V L A  + I + T     +PR +AD R+V+Q+ LN+LS
Sbjct: 370 AYELSFEHIDMAHLVDGCVEMVGLDAARRNIKVTTLLPARLPRPMADQRAVRQMTLNLLS 429

Query: 714 NAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
           NA+ F+  GG + ++ +   N  V L VRD+G GM+  E+E+  +PF Q     + R  G
Sbjct: 430 NAVKFSEHGGLVEVNVSAQ-NGVVSLSVRDSGAGMSPAEVERLGEPFFQA-GDAERRARG 487

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           +GLGL + +A+V  + G F + S+   GT + I  P+  +S
Sbjct: 488 SGLGLAVVRALVKLHDGAFEVTSSVGGGTTVTISLPVRRSS 528


>gi|328544444|ref|YP_004304553.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [polymorphum gilvum SL003B-26A1]
 gi|326414186|gb|ADZ71249.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Polymorphum gilvum SL003B-26A1]
          Length = 517

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 94/249 (37%), Positives = 153/249 (61%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I+E +Q       +++ AE+ +  KS FLA +SHE+RTPL AI+GFSE++K++  GP+ N
Sbjct: 239 IAELEQANAVSDESRRRAEEANLAKSRFLATMSHELRTPLNAILGFSEIMKDEVLGPMAN 298

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
           P Y  YA  I  SG  +L+++N++LD+S+IE+G+  L+ E V+L + V +  +++Q+ A 
Sbjct: 299 PTYRSYAADIHGSGQHLLNLINEILDLSRIEAGRYELNEEAVTLIDIVEDCRTMMQIRAK 358

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
            K I IR S  + +PR+ AD R+++Q+ LN+LSNA+ FTPS G++ I           + 
Sbjct: 359 AKDITIRESHEDGLPRLWADERAIRQVILNLLSNAVKFTPSSGEVTIRIGAAPGGGQFVS 418

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           +RD G G+   E+   ++ FGQ   + +    GTGLGL + +A+V  + G F + S   +
Sbjct: 419 IRDNGPGIPEDEIPIVLQAFGQGAIAIKSAEAGTGLGLSIVQALVAQHGGTFELKSRLRE 478

Query: 801 GTLIEIIFP 809
           GT   +  P
Sbjct: 479 GTEAIVTLP 487


>gi|260903020|ref|ZP_05911415.1| putative lipoprotein [Vibrio parahaemolyticus AQ4037]
 gi|308108337|gb|EFO45877.1| putative lipoprotein [Vibrio parahaemolyticus AQ4037]
          Length = 785

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 75/277 (27%), Positives = 133/277 (48%), Gaps = 8/277 (2%)

Query: 537 KLLSLRIIIKKLPFSSCYSLTMH-DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
           +   L + +  +     +   +   +   KQ  ++L      AE+ +  KS FLA +SHE
Sbjct: 221 RFTWLFVFVAVMLLVGSFLYQLQYRMHNLKQLNSELEAETDKAERAAKAKSSFLAAMSHE 280

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           +RTP+  ++G S++I  +   P+      E+   I  SG  ++ I+ND+LD SK+E  K+
Sbjct: 281 LRTPMNGVLGISQLIAEETKEPVT----KEHIKVILDSGQHLMTILNDILDFSKVEENKL 336

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILADLRSVKQIALNILSN 714
            L   P  L++ ++   S +Q   +EK I +       N      D   ++QI  N+  N
Sbjct: 337 ELEEAPFHLEQVLTPVCSAIQPLIDEKSIELIVENDVPNNTEFTGDCARLRQILFNLAGN 396

Query: 715 AIHFTPSGGQIIISTTH-TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
           A+ FT  G  ++I T   + ++++++ V DTG+G+   +  +    F Q  +S   R  G
Sbjct: 397 AVKFTNEG-HVLIRTELNSEDKQLLIIVSDTGIGIAPDKQGRVFNSFEQADSSTTRRFGG 455

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           TGLGL + K + +   G   + S    GT   +  P+
Sbjct: 456 TGLGLAIVKKLTELMGGSITLKSVEGVGTQFIVTLPI 492


>gi|257870290|ref|ZP_05649943.1| histidine kinase [Enterococcus gallinarum EG2]
 gi|257804454|gb|EEV33276.1| histidine kinase [Enterococcus gallinarum EG2]
          Length = 580

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 73/363 (20%), Positives = 159/363 (43%), Gaps = 29/363 (7%)

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
               QL  +L     G+ II+++  +L  N  + +  G      L +PFT  +       
Sbjct: 237 ASEQQLYGLLNELMIGVFIIDQDDRLLLLNPTMQEQLGIEALPQLPQPFTEVIHDTQLIQ 296

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568
           + +++ E        +L++    S    ++L + +   +L   +      +D++  +Q +
Sbjct: 297 LIYHMNE-----QTPSLQEEIALSDDHPRVLDVTL---RLFNENELLGISYDLTRVRQLE 348

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
                           + DF+  VSHE++TP+T++IGF+E + +           + +  
Sbjct: 349 --------------KMQKDFVGNVSHELKTPVTSLIGFTETLLDGAL--EDRETLVSFLK 392

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I +    + +++ +++ +SK +S   +   + ++L   + + I   +  A EK++    
Sbjct: 393 IIQKDAYRLENLIQEIILLSK-DSHSFDYTAQEINLRALIEQIIRSYEPIAREKQLSFII 451

Query: 689 SFANNIPRILADLRSVKQ-IALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747
           +    +  I    R + Q I  N++ NA++++ S G I +  ++ +  ++ L VRD G+G
Sbjct: 452 NGPEEL--IFISKRELLQPILKNLIENAVNYSKSQGTIQVDYSYRAK-QLQLSVRDQGIG 508

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           +   +  +  + F ++  ++     GTGLGL + K       G   + S P  G+   I 
Sbjct: 509 IDREDQVRIFERFYRVDKARTRNSGGTGLGLAIVKDYTKLLGGTITVDSFPGAGSTFTIT 568

Query: 808 FPL 810
            PL
Sbjct: 569 LPL 571


>gi|186895282|ref|YP_001872394.1| histidine kinase [Yersinia pseudotuberculosis PB1/+]
 gi|186698308|gb|ACC88937.1| histidine kinase [Yersinia pseudotuberculosis PB1/+]
          Length = 1342

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 89/378 (23%), Positives = 169/378 (44%), Gaps = 16/378 (4%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG---YPVEDILRKPF 497
           R   + +   ++Q  SI+ A    + I    G +   N   + +     Y + +   +P 
Sbjct: 601 RRQAKLLHARLLQQESIINALPFAVFIRTASGELAVYNSHFADVHSDKLYDMLNQTHEPA 660

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF-SSCYSL 556
              +       ++ Y   +L     Q ++          ++  + + I  L         
Sbjct: 661 HWPMTSPLDREIDKYCRSVLLNRKPQLVDLSVEIK---GEIRDIFLWIIPLNNAEQGLLG 717

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
              DIS+ K  + +L  A+  AE  +  KS FLA +SHE+RTP+ AI+G  E+       
Sbjct: 718 GWLDISQRKTVERQLEAARVEAESANRTKSTFLATISHELRTPMYAIMGLLELEIRS--- 774

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
               P   +    + +S   ++ +++D++D +KIE+G++++H   V   + +    +L Q
Sbjct: 775 --NRPVEKDTLVTVSKSAQSLMLLLDDIIDSAKIEAGQLSIHPTAVDFHQEMERMFTLYQ 832

Query: 677 LYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSN 734
             ANE+ +       ++IP + +AD+  V+Q+  N+L NA+ FT  G   + I+   +  
Sbjct: 833 PIANERGLRFSGWLDDHIPPLLMADMLRVRQVMGNLLGNALKFTEQGSVSVDITWEPSDE 892

Query: 735 EEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
           +  +  + + DTG+G++        +PF Q    +  R  G+GLGL +   ++    GK 
Sbjct: 893 QHGVMNIDITDTGIGISPAAQATLFQPFSQANEGKSPRFGGSGLGLWICHQLIHKMGGKI 952

Query: 793 YIFSTPAKGTLIEIIFPL 810
            + S   KGT + I  PL
Sbjct: 953 ALESQLGKGTSLLITLPL 970


>gi|88801458|ref|ZP_01116986.1| sensory box sensor histidine kinase [Polaribacter irgensii 23-P]
 gi|88782116|gb|EAR13293.1| sensory box sensor histidine kinase [Polaribacter irgensii 23-P]
          Length = 652

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 90/487 (18%), Positives = 193/487 (39%), Gaps = 33/487 (6%)

Query: 341 LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400
               +     +      +++     L   ++A    D N I+ ++               
Sbjct: 171 HIRWSDEMYKIFDLD--ENLNNENLLDVFINAIHPYDKNRIEKILAKNITGAI--FRVMN 226

Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
           + I     +  ++  +   + +   + + Q G   +  + +I +  ++       ++L A
Sbjct: 227 YRIVRGDGSIRSVHALWGREYSDSGQLIAQFGFLQDITEQKIAENTIKESEKMYRTLLNA 286

Query: 461 TSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRKPFTVFLEQNTPSVMNHYLTEILSL 519
           + +GI I++ +G I   +  + ++FG     + +  PF  F+       M   L+   S 
Sbjct: 287 SPEGIFIMDLKGRITEISDIILEIFGAGDKSEFIGVPFFNFIPSTEVQKMKEILSNAKSE 346

Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKI 577
            L Q +E I     + + +  L I + +        Y   + DIS+ K+ + +L+ ++++
Sbjct: 347 GLIQNIEFILTRKNQSQFICELSITLIQEADGRPDAYMAIIRDISQRKKIEQQLNRSERM 406

Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSE--VIKNQRFGPLGNPRYIEYANYIDRSGN 635
           A        +  + ++HEI  PL +I    E   +K +    +    + + +  I     
Sbjct: 407 A-----SLGEMASGMAHEINQPLLSITLGIENLFMKIENLKAVDESYFNKKSEKIFEDIL 461

Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695
            +  I++ +   S+              ++E+++ AIS++        I +     NNIP
Sbjct: 462 RIGRIIDHVRAFSR---DHDEYISTSFDINESINNAISMISEQFKHHGITLDLQLDNNIP 518

Query: 696 RILADLRSVKQIALNILSNAIHFTPSGG----------QIIISTTHTSNEEVILRVRDTG 745
            I+ +    +Q+ LN+L+NA   T               I+I T H       + V+D G
Sbjct: 519 SIIGNTYRFEQVILNLLTNA-KDTLQETKKTSKSDFKKTIVIRTYHDDYSNF-IEVKDNG 576

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
            G+    +E+ M PF    ++     +GTGLGL ++  ++    G   + S P  GT  +
Sbjct: 577 NGIKPEVIERIMLPFYTTKSA----SKGTGLGLSISFGIIKELKGSIDVESNPESGTTFK 632

Query: 806 IIFPLYD 812
           I  P+ +
Sbjct: 633 ISVPIPE 639


>gi|330813169|ref|YP_004357408.1| phosphate regulon [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486264|gb|AEA80669.1| phosphate regulon [Candidatus Pelagibacter sp. IMCC9063]
          Length = 374

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 68/355 (19%), Positives = 145/355 (40%), Gaps = 28/355 (7%)

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           IL    D I +I++   I+  N++    FG    +I        +     S     +  +
Sbjct: 47  ILNQIPDQILVIDKLKNIVFANQSALNRFG---GNIKDSHIAEVIR---TSKFLDGIDFV 100

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKK 576
           +  ++   ++      T +    ++              + + D++E  + +        
Sbjct: 101 IEKNIPTAVKTEIQTPTYQAYEANIFQAPI-FENERSIIILLRDLTEIYKIQ-------- 151

Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
                   KSDF+A VSH++RTPL +I    E I              ++   + +    
Sbjct: 152 ------QIKSDFVANVSHQLRTPLQSIKMGLETI-------DDKDSQKKFLPIMLQEAYR 198

Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696
           + +++ DLL +SKIE  +     + ++L+E ++   S  +   ++K I +      +   
Sbjct: 199 MENLIKDLLILSKIEQQEHIKPKDIINLNEIINYVKSSNKESLDKKNITLDIDIPEDATN 258

Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKA 756
           ++ D   + ++  N++ N+I ++    +I + T   ++ ++ +  +D G+G+    L + 
Sbjct: 259 VIGDKDKLIEVFSNLVDNSIKYSEPQKKIHVETYKKNSHQIEIVFKDQGIGIPKDLLPRV 318

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
            + F Q    +     GTGLGL +AK ++  + G   I S    G+   I  PL 
Sbjct: 319 SERFFQADPKKSRVVGGTGLGLAIAKHIIIQHRGNLRIESEEGIGSKFIINLPLA 373


>gi|323343405|ref|ZP_08083632.1| two component system sensor histidine kinase/response regulator
           hybrid [Prevotella oralis ATCC 33269]
 gi|323095224|gb|EFZ37798.1| two component system sensor histidine kinase/response regulator
           hybrid [Prevotella oralis ATCC 33269]
          Length = 880

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 81/336 (24%), Positives = 150/336 (44%), Gaps = 17/336 (5%)

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
               +  +  KP+          V       +L  +   + ++  L S  +     +   
Sbjct: 271 LQLAMNILEGKPYKRDNYLKGALVTRDNAGVLLMQNEEMSKQRSRLYSLHDR----VDTY 326

Query: 545 IKKLPFSSCYSLTMHDISEWKQ-----EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
           + +      Y +    I+                 +++ E+ ++ K  F   +SHE+RTP
Sbjct: 327 LAQYNHQKVYIVLFCIITLLLIGFITYIYRTAVMKRRMEEEATNAKLQFFTNISHELRTP 386

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           LT I    E I +         +       + R+ N++  +V ++LD  KI++GKM L  
Sbjct: 387 LTLIADPVEHIIDDENLTR---QQRTMLQIVRRNVNILTRLVGEILDFRKIQNGKMTLTL 443

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719
              +L + + + I +    A +K+I +    +++I R+ AD+  V++I  N+LSNA+ FT
Sbjct: 444 SDFNLSDCLKQWIDVFAATARKKKIALELECSDDI-RMRADIYKVERICYNLLSNAVKFT 502

Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
             GG+I +    T  ++V + V DTG+G+   EL +  + F Q+ +S    G GTG+GL 
Sbjct: 503 QEGGRITLKAA-TDGDKVSICVTDTGMGIAKDELSRIFERFYQVKDSY---GGGTGIGLA 558

Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
           + K+  + + G   + S   KGT   +  PL +  H
Sbjct: 559 IVKSFAELHHGTAVVDSEEGKGTTFTVTLPLTNNDH 594


>gi|299139100|ref|ZP_07032276.1| multi-sensor signal transduction histidine kinase [Acidobacterium
           sp. MP5ACTX8]
 gi|298598780|gb|EFI54942.1| multi-sensor signal transduction histidine kinase [Acidobacterium
           sp. MP5ACTX8]
          Length = 459

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 73/399 (18%), Positives = 160/399 (40%), Gaps = 31/399 (7%)

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476
           P               ++ E                +L  +L++  D +  ++  G I  
Sbjct: 68  PHSDLPFEEFEELAASLDAESARQTKQFEATAESQRKLELLLDSMQDLVVAVDSAGRISW 127

Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
           TN  +++L       +  +     ++      +       L        E+  +G     
Sbjct: 128 TNAPMARLMSSSSGSV--RTGHALVQTIREPEVLACARIALEERT--VAEREAVGFN-TG 182

Query: 537 KLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
           ++ ++              + + DI+  +Q +                + +F+A VSHE+
Sbjct: 183 RIYAVSAAP---MAEGGAVVVLRDITRLQQME--------------RTQKEFVANVSHEL 225

Query: 597 RTPLTAIIGFSEVIKNQ-RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           RTPLT+I+G+ E++ +          +  E+ + I ++   +  +  DLL ++K++SG+ 
Sbjct: 226 RTPLTSIMGYVELLIDDGNADANMTAQSREFFDAILKNAQRMGRLTEDLLVMAKVDSGEQ 285

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANE-KRILIRTSFANNIPRILADLRSVKQIALNILSN 714
            ++  PV +   + E+I+       +  R+ I          ++AD  +V Q+  N++ N
Sbjct: 286 KINPAPVRVAALLQESIAAASGLLKDDARLEIAAMVDTE---VMADTDAVVQVLSNLIEN 342

Query: 715 AIHFTP--SGGQIIISTTHTSN--EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           A+++     G  ++++    +     V   VRD G G+     E+  + F +   ++   
Sbjct: 343 ALNYGRGAHGSLVVMAAEMVAGPPSMVKFSVRDFGAGIAFEHRERIFERFYRADKARSRE 402

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             GTGLGL +AK +V+++ G  ++ S   +G+      P
Sbjct: 403 SGGTGLGLSIAKHLVESHGGTIWVESDLGRGSRFCFTLP 441


>gi|114800094|ref|YP_760221.1| sensor histidine kinase/response regulator [Hyphomonas neptunium
           ATCC 15444]
 gi|114740268|gb|ABI78393.1| sensor histidine kinase/response regulator [Hyphomonas neptunium
           ATCC 15444]
          Length = 944

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 80/244 (32%), Positives = 134/244 (54%), Gaps = 8/244 (3%)

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
             L+   + AE+ +  KS FLA +SHEIRTP+ AI+GF  +I      P    +  ++ +
Sbjct: 185 EALTQRTREAEEANRAKSLFLASMSHEIRTPMNAILGFCHLIARTDLSP----KQKDHVS 240

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I+ +G  +L ++ND+LD SK E+GK+ L   P  +  A++  I+LV + A+ KR+ + T
Sbjct: 241 KINDAGVSLLRLINDILDFSKNEAGKLTLEARPFDVRAAITNQINLVNIDADNKRVKLET 300

Query: 689 SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII---ISTTHTSNEEVILRVRDT 744
             +  +PR I+ D     Q+ LN+LSNA+ FT +G  I+   ++++   +  + L VRD+
Sbjct: 301 RISPAVPRKIIGDELRFNQVVLNLLSNAVKFTENGTVIVRADVASSQDRDVVLELSVRDS 360

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+GM   +  K  K F Q  +S   +  GTGLGL + + +V+   G   + S   +G+  
Sbjct: 361 GIGMDEQQQAKLFKSFSQADSSTTRQFGGTGLGLAICRQIVEQMGGNIRVESKIGEGSTF 420

Query: 805 EIIF 808
               
Sbjct: 421 TFRI 424


>gi|160886260|ref|ZP_02067263.1| hypothetical protein BACOVA_04267 [Bacteroides ovatus ATCC 8483]
 gi|260173623|ref|ZP_05760035.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|315921886|ref|ZP_07918126.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|156108145|gb|EDO09890.1| hypothetical protein BACOVA_04267 [Bacteroides ovatus ATCC 8483]
 gi|313695761|gb|EFS32596.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 869

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 92/536 (17%), Positives = 183/536 (34%), Gaps = 33/536 (6%)

Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANP 346
               ++ N +ES   +  +    +     E  N               Y    ++ + N 
Sbjct: 349 IVWLMRANRRESKRRIQAQTRLLVQNKLVEQRNEFDNVFHSIRDGVITYDTDLHIHFTNR 408

Query: 347 SFLLLTK--YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
           S L +    Y+S           ++        +     +    S    +         +
Sbjct: 409 SLLQMLHLPYESGGRFYEGMMAGSIFKIYYNGQDILHSMLKQVASKGESVKIPQGAFMKE 468

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
            + +    ++       ++               +        E++       ++ +S  
Sbjct: 469 VHSDKYFPVSGEIVPIRSKDTITGMALSARNISNE--------EMQKRFFDMAVDESSIY 520

Query: 465 IAIINREGIILSTNRAVSKLFGYPVE--DILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522
               + E       +   K  GY      I R      +  +    ++      L     
Sbjct: 521 PWQFDMETNCFIFPQGFLKRLGYDESVTTISRDEMDRTIHPDDLKEISPLFNRAL-TGED 579

Query: 523 QTLEKITLGSTKEEKLLSLRII---IKKLPFSSCY--SLTMHDISEWKQEKNKLSHAKKI 577
                         +          I  L   S Y        I  +K  + ++  A+  
Sbjct: 580 SNTRLNFRQRNVNGEYEWWEYRSSVITGLTQDSLYNILGVCQSIQRYKTAEQEMREARDK 639

Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
           A +    KS FLA +SHEIRTPL AI+GFS+++ +       +    ++   I+++  L+
Sbjct: 640 ALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDT--SGFTSEEIAQFIGTINKNCGLL 697

Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN-NIPR 696
           L ++ND+LD+S+IESG M   F   +L   +       +L      + +       +   
Sbjct: 698 LALINDILDLSRIESGTMEFMFAEHNLPLLLKTVHDSQRLNMPP-GVELVLRMPESDKKY 756

Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN---EEVILRVRDTGVGMTNYEL 753
           +  D   ++Q+  N+++NA  FT SG    I+  +  +       + V DTGVG++   +
Sbjct: 757 LTTDNVRLQQVVNNLINNAAKFTSSG---FITFGYEDDEVPGYTRIFVEDTGVGISEEGI 813

Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
               + F ++ N      +G GLGL + + +++   G   + S   KGT   +  P
Sbjct: 814 RHIFERFYKVDNFT----QGAGLGLSICQTIIERLNGTISVTSEVGKGTRFTVRLP 865


>gi|78224191|ref|YP_385938.1| PAS/PAC sensor hybrid histidine kinase [Geobacter metallireducens
           GS-15]
 gi|78195446|gb|ABB33213.1| PAS/PAC sensor hybrid histidine kinase [Geobacter metallireducens
           GS-15]
          Length = 807

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 111/543 (20%), Positives = 214/543 (39%), Gaps = 30/543 (5%)

Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANP 346
            + T+ + +       +HR   + S+ +          VD          +  NL +   
Sbjct: 32  IYQTVSDITVSDRLADTHRLLAASSSAYQRYRLFVNGVVDAIDTGRVSEDAVHNLEHTTV 91

Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
               +T      D       +  L A    D +  K + L  +     A  + L      
Sbjct: 92  ELKSITTGDRSSDFSSLAARTNALLAHLRKDRSFGKVLPLRDTINGIDADLSALAAQCDE 151

Query: 407 RENSLAM--------TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458
               + +          I    A      +    I          +  +     ++  + 
Sbjct: 152 TNRQMILENINSTQSRKIMVFTALALGALVTLALIVMLIRHVTRFELVLRESEERMRVMF 211

Query: 459 EATSDGIAIINREGI-ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
           E+ + GI +I+ +   I+  N    +L G   E+++  P       +       +     
Sbjct: 212 ESINAGIVLIDCDNNSIVDVNPTALRLHGGTKEELIGYPSERLFHGDNVRTDPEH----D 267

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI 577
                   + +      E   +   +    +        +  D+S+    + +L  AK+ 
Sbjct: 268 EGKAIDISKGMLSLCNGERLPVLESVNYVAINGRRYMLKSFVDLSKQMTLETELLAAKEA 327

Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
           AE  S  KS FLA +SHEIRTP+ AIIG+++++K +       P+  +Y N I+ SG  +
Sbjct: 328 AEAASRAKSIFLASMSHEIRTPMNAIIGYAQLLKREGNLA---PQQGQYLNVINNSGEHL 384

Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697
           L ++ND+L++SKIESG +NL   P +    + +  SL    A +K++         +P +
Sbjct: 385 LKLINDILEMSKIESGTVNLTPVPFNFHNLLHDVESLFADRARQKKLRFDVRLQGEVPVV 444

Query: 698 L-ADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEE---------VILRVRDTGV 746
           L AD   V+Q+ +N++ NA+ FT  G   + +S++  S ++         + + V D+G+
Sbjct: 445 LDADEMKVRQVLINMIGNALKFTDEGTIAVTVSSSTDSPDKERDTYGETAITVDVEDSGI 504

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY-IFSTPAKGTLIE 805
           G++  E ++    F Q  + +  R  GTGLG+P+++       G  + +   P  G+   
Sbjct: 505 GISAEEADQVFALFEQTESGR-RRIGGTGLGMPISRQFARLMGGDLFLVRGEPGIGSAFR 563

Query: 806 IIF 808
            +F
Sbjct: 564 FVF 566


>gi|218887817|ref|YP_002437138.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218758771|gb|ACL09670.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 1007

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 104/664 (15%), Positives = 205/664 (30%), Gaps = 69/664 (10%)

Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253
               + L  + +          +    +      + P   +  +++   +T         
Sbjct: 231 EEFARGLVTRLAACGLEPSYMLAETPFELSRLITEEPWDMVVAESEAPGMTWQEVLMLVR 290

Query: 254 LKTEKYPL---LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310
              E  P      + +  L  +      +        + G          E    R    
Sbjct: 291 GVREDVPFVLVAPAADEGLALEAVREGADEVLCADDWHLGPAFMRLVR--EAERRRTLSV 348

Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAG----- 364
                +         V+   +  F     G LF ANP+F  +  Y S D +  A      
Sbjct: 349 HWREINRDARQWRGMVEGTVLGIFRCRPWGELFSANPAFADMFGYPSPDALFEAIRSGGA 408

Query: 365 --------GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
                        L    L      + +   R +           T +    ++  ++  
Sbjct: 409 AGVAPGATMPEGWLPGGFLDRATLDRMLNTLRDEGEVRDFE---TTARRADGSTFWISVN 465

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476
              +     E     G   +    +  +  +     +     ++  D I I++    +  
Sbjct: 466 ARVQRGSTGEISGIEGTVEDIDRRKAVENMIIRAKQEWEKTFDSVPDIIMIMDAGQRVRR 525

Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
           +N A+ +L G   +D++ +     L  +  +         +     +T E          
Sbjct: 526 SNMALGRLLGLHPKDLVGRHCNDVLGASVMADDVCAAIRAMPWGESRTEELYLPSL---G 582

Query: 537 KLLSLRIII-----------KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
               + +              +   +    L  HDIS  KQ + +L  A+K+        
Sbjct: 583 GHFLVTLSPFLADSQYDGEPVREGDAPGTVLVAHDISSRKQLEARLRQAQKM-----EAI 637

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
                 ++H+    L  ++G++E+  +Q                +  +G    D++  +L
Sbjct: 638 GTLAGGIAHDFNNILGVMMGYTEMSLDQ---TEEGDAQHRRLTEVLAAGRRARDLIRQIL 694

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
             S+ E         P+     + E + L++       + IR   A   P +LA+L  ++
Sbjct: 695 TFSRQE----EPSRLPLPPLAPIKETVRLLRATLPA-NVDIRLDLAETGP-LLANLSQLQ 748

Query: 706 QIALNILSNAIHFTPS-GGQIIISTTHTS--------------NEEVILRVRDTGVGMTN 750
           Q+ +N+ +NA H     GG + ++                        LRVRDTG G+  
Sbjct: 749 QVIMNLCANAAHAMKEHGGVLHLALDAVELDEDEAAARSLPAPGGYARLRVRDTGHGIPA 808

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             +E    PF           EGTG+GL L   +V A+ G   + ST   GT  E++ PL
Sbjct: 809 DIMENIFDPFFTTKKPD----EGTGMGLALVHGIVTAHGGAVAVQSTVGVGTEFEVLLPL 864

Query: 811 YDTS 814
              +
Sbjct: 865 APQA 868



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/401 (8%), Positives = 87/401 (21%), Gaps = 48/401 (11%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCD---------VSDILHIDPNNHIGDL 136
            +     G L   +       G  +   +   +            +      P   +   
Sbjct: 371 IFRCRPWGELFSANPAFADMFGYPSPDALFEAIRSGGAAGVAPGATMPEGWLPGGFLDRA 430

Query: 137 --------LKRQNTWYG-KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187
                   L+ +      +TT    +G+  ++ +   A        E SG  G   V   
Sbjct: 431 TLDRMLNTLRDEGEVRDFETTARRADGSTFWISV--NARVQRGSTGEISGIEG--TVEDI 486

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEK----------YDIFSQQSPPPHLRMK 237
                   +  R  +++    +       +                +          R  
Sbjct: 487 DRRKAVENMIIRAKQEWEKTFDSVPDIIMIMDAGQRVRRSNMALGRLLGLHPKDLVGRHC 546

Query: 238 NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297
           N V   +         ++   +    +EE  LP       + L+ +     +        
Sbjct: 547 NDVLGASVMADDVCAAIRAMPWGESRTEELYLPSLGGHFLVTLSPFLADSQYDGEPVREG 606

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSV 357
           ++   +   +  S     +       +            + G     N    ++  Y   
Sbjct: 607 DAPGTVLVAHDISSRKQLEARLRQAQKM-----EAIGTLAGGIAHDFNNILGVMMGYT-- 659

Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
                       LD  +  D    +   +  + R       ++ T     E S       
Sbjct: 660 ---------EMSLDQTEEGDAQHRRLTEVLAAGRRARDLIRQILTFSRQEEPSRLPLPPL 710

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458
                             +          +   + QL  ++
Sbjct: 711 APIKETVRLLRATLPANVDIRLDLAETGPLLANLSQLQQVI 751



 Score = 41.6 bits (96), Expect = 0.63,   Method: Composition-based stats.
 Identities = 43/395 (10%), Positives = 106/395 (26%), Gaps = 31/395 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS-DILHIDPNNHIGDLLKRQNTWYGKT 147
           +DA   ++  +  L + +G +   ++G    DV    +  D        +    +   + 
Sbjct: 517 MDAGQRVRRSNMALGRLLGLHPKDLVGRHCNDVLGASVMADDVCAAIRAMPWGES-RTEE 575

Query: 148 TLWPIEGTNLYVPIDLA---ALPIYSRN--REFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
              P  G   +  + L+   A   Y     RE        + H         A  +   +
Sbjct: 576 LYLPSLGG--HFLVTLSPFLADSQYDGEPVREGDAPGTVLVAHDISSRKQLEARLR-QAQ 632

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
           K   +  +  G   +  +  +I         + +        ++    + +    +   L
Sbjct: 633 KMEAIGTLAGG---IAHDFNNILGVMMGYTEMSLDQTEEGDAQHRRLTEVLAAGRRARDL 689

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
             +  +   QE+   + L          T++         +  R   + +       +  
Sbjct: 690 IRQILTFSRQEEPSRLPLP--PLAPIKETVRLLRATLPANVDIRLDLAETGPLLANLSQL 747

Query: 323 PETVDKC---PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA------- 372
            + +               G L  A  +  L     +   +   GG + L          
Sbjct: 748 QQVIMNLCANAAHAMKEHGGVLHLALDAVELDEDEAAARSLPAPGGYARLRVRDTGHGIP 807

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA------NQFPE 426
             + +N         + D       A +H I      ++A+                 P+
Sbjct: 808 ADIMENIFDPFFTTKKPDEGTGMGLALVHGIVTAHGGAVAVQSTVGVGTEFEVLLPLAPQ 867

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
              +  +  +   +      +  +   L +I+ A 
Sbjct: 868 AGEEAAMRADSAHSGSGLALVVDDEAPLAAIMGAM 902


>gi|193215941|ref|YP_001997140.1| integral membrane sensor signal transduction histidine kinase
           [Chloroherpeton thalassium ATCC 35110]
 gi|193089418|gb|ACF14693.1| integral membrane sensor signal transduction histidine kinase
           [Chloroherpeton thalassium ATCC 35110]
          Length = 500

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 65/246 (26%), Positives = 119/246 (48%), Gaps = 1/246 (0%)

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           +   K+ H   + ++      +F+A +SH++RTPL +I G+ E I  ++       +  +
Sbjct: 243 EMAAKIEHTMNLLKENEKLLREFIANISHDLRTPLASIEGYMETIILKKHLLSEKEKQ-Q 301

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           Y N I ++   +  +VN LLD+SK+E+ ++ L  EP S+ E + + +      A    I 
Sbjct: 302 YFNTILKNTRTLNRLVNQLLDLSKLEARQVKLKPEPFSITELIQDVMLKFNPQATASNIS 361

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +   F ++ P + ADL  + ++  N++ NA + T   G I +         + +RV+DTG
Sbjct: 362 LNAHFPSHTPFVFADLGLIDRVLQNLIGNAFNHTEENGCIDVEIEMLDEYTMYVRVQDTG 421

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
            G+   +L+     F Q    +     G GLGL +AK +++ +     + ST   GT   
Sbjct: 422 KGIAPEDLKHIFDRFYQGDKVRSKHKSGAGLGLTIAKKIMELHHSTLDVESTLGVGTTFS 481

Query: 806 IIFPLY 811
              P+Y
Sbjct: 482 FKLPVY 487


>gi|241663307|ref|YP_002981667.1| PAS/PAC sensor signal transduction histidine kinase [Ralstonia
           pickettii 12D]
 gi|240865334|gb|ACS62995.1| PAS/PAC sensor signal transduction histidine kinase [Ralstonia
           pickettii 12D]
          Length = 442

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 75/404 (18%), Positives = 160/404 (39%), Gaps = 35/404 (8%)

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDT-----RINKRKMEIEVMQLCSILEATSDGI 465
                +      + P  +   G     +       R    ++E +  +    ++A+ +G+
Sbjct: 52  RLWRVLDSPAYGEIPSALGLWGEVYYRLHRLMKGWRTQVLQVEQQHSRFIQAIQASPNGV 111

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
            +++ E  I   N    + FG   +  LR+  T  + +        ++  +   +  + L
Sbjct: 112 LMLDGEDQIEWCNAVAEEHFGLSAKRDLRQRITHLIRRP------EFVRYLARGEFEEPL 165

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
               +G  K+  ++S +I+           L   DI++ +  +              + +
Sbjct: 166 TMHDVGPHKQ-SIISAQILPY---GEDRKLLVSQDITKLENTE--------------AMR 207

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
            DF+A VSHE++TPLT + GF E +++    PL       Y + +      +  +V DLL
Sbjct: 208 RDFVANVSHELKTPLTVLSGFLETVRD---IPLPEEDKRRYLDMMHTQAMRMQHLVEDLL 264

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
            ++ +E         PV +   + +    ++  +  +   +  +    +  +      + 
Sbjct: 265 ALATLEGNPEPPSLAPVPMQRMMLQLQHDIEALSAGRH-TVSMTCDPGV-SVCGAELELL 322

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
               N+ SNA+ +TP GG I +          +  V DTG+G+    + +  + F ++  
Sbjct: 323 SAFSNLASNAVRYTPDGGSIRLDWGVRD-GHAVYSVTDTGIGIAPEHIPRLTERFYRVDR 381

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           S+     GTGLGL + K ++  + G+  + S   KG+    +FP
Sbjct: 382 SRSRDTGGTGLGLAIVKHVLSRHGGELQVTSEHGKGSTFRAVFP 425


>gi|78043472|ref|YP_360244.1| sensor histidine kinase [Carboxydothermus hydrogenoformans Z-2901]
 gi|77995587|gb|ABB14486.1| sensor histidine kinase [Carboxydothermus hydrogenoformans Z-2901]
          Length = 488

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 68/254 (26%), Positives = 128/254 (50%), Gaps = 7/254 (2%)

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           Q   +L        K   ++ +FLA VSHE+RTPLT I G++E + +   G + + +  E
Sbjct: 236 QMAAQLEKYIIAYNKREQNRREFLANVSHELRTPLTIIQGYTEALLD---GIVTDEKIRE 292

Query: 626 -YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
            +   I +    +  + N+LLD++ IE G+  L FE + L     +  +  +    EK I
Sbjct: 293 EHLKNILQEAERLKAMANELLDLASIEEGREKLKFEKIDLANFAQDCFNAFKTQFFEKGI 352

Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744
            +         +++ D   + ++  N+LSNA+ FTP+GG++         ++  + V+D+
Sbjct: 353 ELELEVNVQDGKVVGDRSKLLRVVGNLLSNALKFTPAGGKVKFEV-IEGEKDYQIHVKDS 411

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G G+   +LEK  + F ++  ++  +  G GLGL + K++V+A+ G+ +  + P  G   
Sbjct: 412 GPGIPEQDLEKIFERFYKVDKARSSK--GFGLGLAITKSIVEAHGGQIFARNNPEGGAKF 469

Query: 805 EIIFPLYDTSHPHD 818
            ++ P    S  +D
Sbjct: 470 TVVLPKLPPSAGND 483


>gi|310824676|ref|YP_003957034.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309397748|gb|ADO75207.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 882

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 106/869 (12%), Positives = 241/869 (27%), Gaps = 115/869 (13%)

Query: 48  SFEQSNFTDQNQESVSNT-NYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTI 106
           + ++    D +            + + F         +  W     G     ++      
Sbjct: 21  TEQRLPEPDISSPPPGELLGEDSASDAFRRIAEAIP-QLVWTTRPDGSFDYYNQRWYDYT 79

Query: 107 GNYAFKMIGMRLCDVSDILHI-DPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAA 165
           G    +  G           + +        L+    +  +      +G  LY      A
Sbjct: 80  GLTPGQAHGDGWQGPFHPDDLPEALRRWQHSLRTGEPYEVEYRCRRHDG--LYRWFLGRA 137

Query: 166 LPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF 225
            P+          + FG               + L +  S L        ++E     + 
Sbjct: 138 SPVRDGAGRII--KWFGTCTDIDDPKRATESMRFLAEASSLLSSELNPEVTLEALSQLVV 195

Query: 226 SQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ------------- 272
            + +    + +  +  +L +      D  K      +     S PE              
Sbjct: 196 PRLADWCSIELAQEDGTLRQVSVAHVDPEKVRFAQEMRRRYPSRPEDTHGITQVARTGVP 255

Query: 273 ----EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS---------------- 312
               E    + +      ++   L+  +  S   L                         
Sbjct: 256 EFAPELTDEMLVTGAWDAEHLRLLRELAPRSSMVLPLTARGRTLGAMVLVNAESRRHFTF 315

Query: 313 -----------------------AYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSF 348
                                        E      +       +V +  G +   +PS+
Sbjct: 316 EDLSLAGQLAVRAALAVDNARFYEEAVHAEQRFRSLITATAQAVWVTAPDGTVLEDSPSW 375

Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM-----------LYRSDRTCIAAS 397
             LT     +    +G L  +    +     A +  M           + R D       
Sbjct: 376 RALTGQT-YEQWRGSGWLDAVHPEDRERIGVAWRESMAQRRIYEVEYLIRRPDGRYTPTL 434

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC-- 455
           AR   +     +         +   Q         +E E    R    + ++        
Sbjct: 435 ARAVPVVNADGSIREWIGTHTDLEAQREAEAAARLLESEQSARRHEALRADVSAALAQPG 494

Query: 456 -----------SILEATSDG---IAIINREGIILSTNRAVSK----------LFGYPVED 491
                      +++         + +++RE  +L    +  +            G     
Sbjct: 495 SSLQVLQGACEALVRHLGVARARVWLLDREEQLLHARVSAGQGPTQDEPPPLALGVSPIG 554

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEI-LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
            + +    ++  +        + E+ L  +         +   +   +L+L         
Sbjct: 555 RIAQSRKPWVVHDVRHSPGPEIAELSLPEEKVSFAGYPLVLGEQLIGVLALASTQPFSRD 614

Query: 551 SSCYSLTMHDI----SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
                    +I     E ++ +  L    +   + +     F    SH+++ PL  +  +
Sbjct: 615 IVDVLAAAAEIITQGVERRRAEEALRLHAQELARSNEELQQFAYVASHDLQEPLRMVASY 674

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
           ++++  +  G L +    E+  Y     N +  ++ DLL  S++ +   +L     SL  
Sbjct: 675 TQLLGRRYRGKL-DADADEFIRYAVDGVNRMQRLIQDLLAYSRVGTRGRDLKPCE-SLKP 732

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF-TPSGGQI 725
               A   ++    E    +       +P +LAD   + Q+  N++ NA+ F  P   ++
Sbjct: 733 L-ERAQENLRAMLQETGGAVEVE--GTLPTVLADESQLVQLFQNLVGNALKFHGPVPPRV 789

Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
           ++       E     V+D G+G+     E+    F ++    +    GTG+GL + K +V
Sbjct: 790 VVRAESQGAEGWRFTVKDNGLGIDPQYFERIFVIFQRLHG--REEYPGTGIGLAICKKIV 847

Query: 786 DANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           + + G+  + S P +G+      P    +
Sbjct: 848 ERHGGRIGVESQPGEGSTFWFTLPAAPPA 876


>gi|119512212|ref|ZP_01631301.1| two-component hybrid sensor and regulator [Nodularia spumigena
           CCY9414]
 gi|119463110|gb|EAW44058.1| two-component hybrid sensor and regulator [Nodularia spumigena
           CCY9414]
          Length = 506

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 86/387 (22%), Positives = 164/387 (42%), Gaps = 15/387 (3%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
              ++ +     +L ++L + SD +   N +  +   N A   L G+   D   K  T+ 
Sbjct: 123 HQLEQDLRENRDKLATLLNSMSDAVIATNEQAKVTFMNPAAELLTGWKQADAQGKDITII 182

Query: 501 LEQNTP---SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SC 553
                    + + + + ++L       L + T   TK+ K + +      +         
Sbjct: 183 FNIVDEITEAALENPVLKVLRDQKVVYLGEFTSLITKDGKKVPIGDSASPIMRRPNQIDG 242

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
             +   D+SE +Q +  L  A     + +  KS F++ VSH+ R PLT I    E +   
Sbjct: 243 VVVVFWDLSERRQTE-FLERALNQERELNHLKSLFISTVSHDFRNPLTVIQTAVE-LIEI 300

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
           +   L   +   Y   I  +   +  ++ D+L + + + GK+  H + ++L++   E I+
Sbjct: 301 QGDSLTATKKTTYLKRIKGAVESMKQLMEDVLFMGRSDVGKVECHPDIINLEQLCREVIA 360

Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
              L  N     I  +  +     L D + +  I +N+LSNA+ ++P    I +      
Sbjct: 361 EFSLVTNG-GHEIIFTCHSKCTDALIDEKLLNYILINLLSNAVKYSPQNQNIHVDLNCDY 419

Query: 734 NEEVIL-RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
            E++++ RV+D G+G+   + ++  + F +   S     +GTGLGL + K  V+A+ G+ 
Sbjct: 420 REQIVILRVQDQGIGIPEVDQKRLFESFYRA--SNVQSIQGTGLGLLIVKRCVEAHQGEI 477

Query: 793 YIFSTPAKGTLIEIIFPL--YDTSHPH 817
              S    GT   +I PL      HP 
Sbjct: 478 SFTSQVGVGTTFTVILPLNYSVAHHPQ 504


>gi|225418770|ref|ZP_03761959.1| hypothetical protein CLOSTASPAR_05994 [Clostridium asparagiforme
           DSM 15981]
 gi|225041704|gb|EEG51950.1| hypothetical protein CLOSTASPAR_05994 [Clostridium asparagiforme
           DSM 15981]
          Length = 1133

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 119/758 (15%), Positives = 239/758 (31%), Gaps = 73/758 (9%)

Query: 95  LKEISEELPKTIGNYAFK----MIGMRLCDVSDILH-IDPNNHIGDLLKRQNTWYGKTTL 149
              I+  +   +G          IG  + +        + +  +   L  ++ +     +
Sbjct: 170 FYFINRHMLDYLGYENEAEFTADIGGMISNCRHPDDRAEVSRLLTAQLAEKDEYAVDYRM 229

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL-----DKKF 204
              +GT  Y+ +        + +   +      +          +     L        F
Sbjct: 230 KKKDGT--YIWVHDLGRRTVAEDGRAAVAS---VCVDITAQKTAQDEVLHLYNNIPGGVF 284

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
               +            ++                 + ++     +D  +  +K      
Sbjct: 285 RCRFDEDFSVIDANDGLFEFIGYSRDEFAAM----GNRMSAVIYPEDLSVMAQKLKEQLK 340

Query: 265 EESSLPEQEDFHTINLNQYT---KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
             +++  Q      + +      K Q F             +   +   L    +E    
Sbjct: 341 YGNTIHNQNRLICKDGSVKWISVKAQLFTEQNGEQHFYCVLVDITDEKRLQERNNELYEQ 400

Query: 322 TPETVDKCP---------IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                 +           I        +        +          +E     +   + 
Sbjct: 401 EIAYFAELSSRDGTFQGRINITGNRLESYISTADVAVGRVGDTYEQTVENLAASAVDSEY 460

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
                    +  +L       +         +       + T        +  + +    
Sbjct: 461 GDFIRETLRREKVLADYKAGRVDYHFNFLRRRKVGTAFWSDTNFRSCLNPETGDIILFF- 519

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
              +  + R+ ++ ++  + +L    +  ++           +  + A  +L G+  E I
Sbjct: 520 YTQDVTEQRLQEQLLKK-ITKLDY--DIITE-----------IDISTAGYRLVGFSDEWI 565

Query: 493 LRKPFTVFLEQNTPS---------VMNHYLTEI------LSLDLRQTLEKITLGSTKEEK 537
              P      Q                 +L ++        L  + +   I     K   
Sbjct: 566 PSVPMEGDFRQEIRRIAGLSMGEAAQKEFLEKLDFGYMKRQLRQQNSYTFILELMEKGGP 625

Query: 538 LLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK----LSHAKKIAEKESSHKSDFLARVS 593
            +    +           +T  D+++  +++ K    L+ A   AE+ ++ KSDFL+R+S
Sbjct: 626 RIKRFQVFYINEELGRVCMTRADVTDVVRQEQKQKEELAAALVAAEQANAAKSDFLSRMS 685

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HEIRTP+ AIIG S +          + +  +  + I  S   +L ++ND+LD+S+IESG
Sbjct: 686 HEIRTPMNAIIGMSTIAAQSIG---DDEQVADCISKIGISSRFLLSLINDILDMSRIESG 742

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNIL 712
           KM L  E +  ++ +    S+    A  K +         +      D   ++Q+ +NIL
Sbjct: 743 KMLLKSERIPTEDFLGGINSICYSQAAVKGVEYECIVDPVLSDYYMGDAMKLQQVLINIL 802

Query: 713 SNAIHFTPSGGQIIIST----THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
           SNAI FT  GG++  S        S+  +   V DTGVGM    L    +PF Q      
Sbjct: 803 SNAIKFTGEGGKVTFSAMERRKIKSDAILRFVVNDTGVGMNEEFLPHIFEPFSQESTGTT 862

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
               GTGLGL ++K +VD   GK  + S    GT   +
Sbjct: 863 ALYGGTGLGLAISKNIVDMMDGKISVRSIKGIGTEFTV 900



 Score = 43.1 bits (100), Expect = 0.20,   Method: Composition-based stats.
 Identities = 28/211 (13%), Positives = 70/211 (33%), Gaps = 15/211 (7%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFK--MIGMRLCDVSDILHIDP-NNHIGDLLKRQN 141
           F    D    + + ++ L + IG    +   +G R+  V     +      + + LK  N
Sbjct: 284 FRCRFDEDFSVIDANDGLFEFIGYSRDEFAAMGNRMSAVIYPEDLSVMAQKLKEQLKYGN 343

Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
           T + +  L   +G+  ++ +        +  + F     + ++     +        RL 
Sbjct: 344 TIHNQNRLICKDGSVKWISVKAQLFTEQNGEQHF-----YCVLVDITDEK-------RLQ 391

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
           ++ + L+E +  + +    +   F  +      R+++ +S+         D  +     L
Sbjct: 392 ERNNELYEQEIAYFAELSSRDGTFQGRINITGNRLESYISTADVAVGRVGDTYEQTVENL 451

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTL 292
             S   S        T+   +       G +
Sbjct: 452 AASAVDSEYGDFIRETLRREKVLADYKAGRV 482


>gi|220933274|ref|YP_002512173.1| Hpt sensor hybrid histidine kinase [Thioalkalivibrio sp. HL-EbGR7]
 gi|219994584|gb|ACL71186.1| Hpt sensor hybrid histidine kinase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 866

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 67/250 (26%), Positives = 117/250 (46%), Gaps = 11/250 (4%)

Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
             A + +  K  FLA +SHE+RTPL  +IG S+++ +       N    +    I  S  
Sbjct: 196 DRANEANQAKPRFLANMSHELRTPLNGVIGMSDLLMDTPL----NDEQRDLGRSIHTSAR 251

Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695
           ++L ++ ++LDIS+IESGK++   E   L   V   + + +  A  K + +      ++P
Sbjct: 252 VLLGLIENILDISRIESGKLSSEREDFDLHRLVHGTLGMFEAQARGKGLHLGARIDPSVP 311

Query: 696 -RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-----TSNEEVILRVRDTGVGMT 749
             +  D   ++Q+ +N++ NA+ FT  G Q+ +S             +  +VRDTG+G+ 
Sbjct: 312 FALHGDALHLRQVLVNLIGNALKFTERG-QVELSVQLLEAPAEDAVRLRFKVRDTGIGIP 370

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
                +  + F Q   +   R  GTGLG  +A+ +V    G   + S   +GT      P
Sbjct: 371 EEAQARIFESFEQADTTVTRRYGGTGLGTTIARQLVQLMGGTMGLESRVGEGTTFYFDLP 430

Query: 810 LYDTSHPHDC 819
           L   + P + 
Sbjct: 431 LGRQAIPEEA 440


>gi|187925975|ref|YP_001892320.1| PAS/PAC sensor hybrid histidine kinase [Ralstonia pickettii 12J]
 gi|241665459|ref|YP_002983818.1| PAS/PAC sensor hybrid histidine kinase [Ralstonia pickettii 12D]
 gi|187727729|gb|ACD28893.1| PAS/PAC sensor hybrid histidine kinase [Ralstonia pickettii 12J]
 gi|240867486|gb|ACS65146.1| PAS/PAC sensor hybrid histidine kinase [Ralstonia pickettii 12D]
          Length = 794

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 101/596 (16%), Positives = 195/596 (32%), Gaps = 40/596 (6%)

Query: 238 NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297
            +  +      H       +                  H     +             + 
Sbjct: 63  EQWLAHVHPDDHAALRAAWDGLARGQDFVLEYRWIGVDHREQRVRERGYLMPSPNGGPAH 122

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKS 356
                              E E       +  P P   +     + +AN ++        
Sbjct: 123 AVGVIEDVTQRQQTLTALTESEFQLQWLTESVPFPLVQIDPEHRVRFANRAYAQRFGMLP 182

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
              +      S L      +    I   +        +     L   +      +   + 
Sbjct: 183 DAVVG-----SHLRAVMGEAAYARILAHLGEGFAGRRVDFEIELPYPEDIGSRFVHAAYS 237

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476
           P +  +   + +    +E +  + +  +R+      +  +++E   D IA ++R+   + 
Sbjct: 238 PQQGPDGSVQAL--VCLEEDITERKEAERERYRHQREFVTLVENAPDVIARLDRDLHCVY 295

Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL-SLDLRQTLEKITLGSTKE 535
            N AV   FG     +  +  +      T +        +  +    QTL        + 
Sbjct: 296 VNCAVIHAFGVTPAAMTGRTLSASPLPATVAGPLDAAARLAFTTGAEQTLTLHLDAGERR 355

Query: 536 EKLLSLRIIIKKLPFSSCYS----LTMHDISEWKQEKNKL-------SHAKKIAEKESSH 584
             +    + +      +       L ++D++E  + + +          A+  AE  +  
Sbjct: 356 TGIAHYNVRVIPEEDRTGTIESAMLIVYDVTERTEAERERDALLLREQTARAHAEAATLA 415

Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
           +  FLA VSHE+R+PL  I  ++ V++NQ     G+P        I       + ++ DL
Sbjct: 416 RDQFLAVVSHELRSPLNGIQNWTYVLENQLSD--GSPLVQRALAGIKTGVEQQVRLIEDL 473

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704
           LD +++ SGK+ L  EP  L  A+  A++ V+  A E+ I +  +       I  D   V
Sbjct: 474 LDATRVMSGKLRLTREPFVLSLAIERALNSVRALAAERGITLHVASLLEAHEIDGDADRV 533

Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764
           +QI  N+L+NAI FT  GG + +S      E   + VRD G G+    L     PF Q  
Sbjct: 534 EQIVWNLLTNAIKFTHEGGDVWLSADLV-GEVARIVVRDNGRGIGPAFLPYLFDPFRQAD 592

Query: 765 NSQQIRG--------EGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFPLY 811
            +   R                   K + + + G+ +  S     G +  +  PL+
Sbjct: 593 GAHTRRTGGLGLGLAL--------VKRLTELHGGRVHAHSDGERSGAVFTVYLPLH 640



 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/350 (8%), Positives = 79/350 (22%), Gaps = 18/350 (5%)

Query: 56  DQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIG 115
           D  Q   + T   +SE    +            ID    ++  +    +  G     ++G
Sbjct: 129 DVTQRQQTLTALTESEFQLQWLTESVPFPLV-QIDPEHRVRFANRAYAQRFGMLPDAVVG 187

Query: 116 MRLCDV-SDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNRE 174
             L  V  +  +     H+G+    +   +     +P +  + +  +  A  P    +  
Sbjct: 188 SHLRAVMGEAAYARILAHLGEGFAGRRVDFEIELPYPEDIGSRF--VHAAYSPQQGPDGS 245

Query: 175 FSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP---- 230
                   +        +      R  ++F  L E      +                  
Sbjct: 246 VQAL--VCLEEDITERKEAERERYRHQREFVTLVENAPDVIARLDRDLHCVYVNCAVIHA 303

Query: 231 ---PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287
               P       +S+          +    +    T  E +L    D             
Sbjct: 304 FGVTPAAMTGRTLSASPLPATVAGPLDAAARLAFTTGAEQTLTLHLDAGERRTGIAHYNV 363

Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPS 347
                ++ +      +      +     +   +                       A   
Sbjct: 364 RVIPEEDRTGTIESAMLIVYDVTERTEAERERDAL-----LLREQTARAHAEAATLARDQ 418

Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397
           FL +  ++    +      + +L+      +  ++  +            
Sbjct: 419 FLAVVSHELRSPLNGIQNWTYVLENQLSDGSPLVQRALAGIKTGVEQQVR 468


>gi|209546371|ref|YP_002278261.1| PAS/PAC sensor hybrid histidine kinase [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209539228|gb|ACI59161.1| PAS/PAC sensor hybrid histidine kinase [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 642

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 87/517 (16%), Positives = 176/517 (34%), Gaps = 38/517 (7%)

Query: 318 GENLTPETVDKCPI--PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
            E      VD       + +   G +   N        YK  + +      S        
Sbjct: 13  DEGRFRLLVDAITDYAIYMLSPEGIITSWNTGAQRFKGYKPSEILGE--HFSRFYLEEDR 70

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
           +     + +   +               + +     A   I     +   E +    I  
Sbjct: 71  AAGTPERALATAKEQGR---FEGEGWRQRKDGSRFWA-HVIIDPIRHPSGELIGFAKITR 126

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILR 494
           +  + R  +  +     Q   +++  SD  I +++  G + S N    ++ GY  ++I+ 
Sbjct: 127 DLTERRAAENAIRQSEEQFRRLVQGVSDYAIYMLDPSGNVSSWNFGAERIKGYRPDEIIG 186

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554
           + F+ F      +      T +         E+      K+       ++I  +      
Sbjct: 187 RHFSTFYTLEDRAAGMPQ-TALGIARAEGRFEREGWRVRKDGTRFWASVVIDAIRGDDGQ 245

Query: 555 SL----TMHDISEWKQEKNKLSHAKKIAEKES--SHKSDFLARVSHEIRTPLTAIIGFSE 608
            +       DI+E  + +  L  A++   +             ++H+    L A++G  E
Sbjct: 246 VIGFAKITRDITEKMETQRALEQAREELFQSQKMEAIGQLTGGIAHDFNNLLMAVLGSLE 305

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
           ++K +      +       +   +       +   +L  S+    +  LH EP+ +   V
Sbjct: 306 ILKKRM---PQDRSLTSLVDNAMQGAQRGAALTQRMLAFSR----RQELHMEPIDVSGLV 358

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
              + ++   +      I TSF   +P IL D   ++   LN++ NA    PSGG+I++ 
Sbjct: 359 RGMMDMLS-RSLGPLTRIETSFPIRLPTILTDPNQLEMAILNLVVNARDAMPSGGRILLR 417

Query: 729 TTHT----------SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
                             + + V D G GM    +E+A+ PF          G+GTGLGL
Sbjct: 418 AAEESVPSGKGLLPPGRYIRIAVIDEGEGMDAKTMEQAITPFFTTKG----VGKGTGLGL 473

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            + + +   + G+  + S   +GT  E+ FP+     
Sbjct: 474 SMVQGLASQSGGRLMLKSRLGEGTTAELWFPVVTLEQ 510



 Score = 73.1 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/434 (9%), Positives = 108/434 (24%), Gaps = 39/434 (8%)

Query: 67  YLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH 126
            L+ E  F       T    + +   G +   +    +  G    +++G           
Sbjct: 10  SLNDEGRFRLLVDAITDYAIYMLSPEGIITSWNTGAQRFKGYKPSEILGEHFSRFYLEED 69

Query: 127 I---DPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI 183
                P   +    ++   + G+      +G+       +   PI   + E  GF    I
Sbjct: 70  RAAGTPERALATAKEQGR-FEGEGWRQRKDGS--RFWAHVIIDPIRHPSGELIGFAK--I 124

Query: 184 VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL----RMKNK 239
                         ++ +++F  L +    ++    +     S  +         R    
Sbjct: 125 TRDLTERRAAENAIRQSEEQFRRLVQGVSDYAIYMLDPSGNVSSWNFGAERIKGYRPDEI 184

Query: 240 VSSLTEYYAHKDDVLKTEKY-PLLTSEESSLPEQEDFH-TINLNQYTKKQYFGTLQNNSK 297
           +      +   +D         L  +      E+E +    +  ++        ++ +  
Sbjct: 185 IGRHFSTFYTLEDRAAGMPQTALGIARAEGRFEREGWRVRKDGTRFWASVVIDAIRGDDG 244

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP--IPFFVYSHGNLFYANPSFLLLTKYK 355
           +   +       +             E + +          + G     N   + +    
Sbjct: 245 QVIGFAKITRDITEKMETQRALEQAREELFQSQKMEAIGQLTGGIAHDFNNLLMAVLG-- 302

Query: 356 SVDDIEIAGGLSTLLDA------PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
           S++ ++        L +             A+   ML  S R  +       +       
Sbjct: 303 SLEILKKRMPQDRSLTSLVDNAMQGAQRGAALTQRMLAFSRRQELHMEPIDVSGLVRGMM 362

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469
            +    +      +    +    I  +     +    + +         +A   G     
Sbjct: 363 DMLSRSLGPLTRIETSFPIRLPTILTDPNQLEMAILNLVVNAR------DAMPSG----- 411

Query: 470 REGIILSTNRAVSK 483
             G IL   RA  +
Sbjct: 412 --GRILL--RAAEE 421


>gi|29347950|ref|NP_811453.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|253572542|ref|ZP_04849944.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
 gi|29339852|gb|AAO77647.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|251837957|gb|EES66046.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
          Length = 391

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 103/398 (25%), Positives = 168/398 (42%), Gaps = 35/398 (8%)

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP--------VEDIL 493
              RK+E       +IL+     I +I+ +  +L TN    +L G           + + 
Sbjct: 7   RESRKLEHTNHIASAILKNVHAYILLIDNDFKVLKTN--YYQLTGTQKGLEEKRVGDLLQ 64

Query: 494 RKP-------FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS----LR 542
            +                +  +                L       T E+K +     + 
Sbjct: 65  CRNALSAEGGCGTHAYCGSCPIRCAIRQAFEQRRGFTDLNATLNVLTSEKKSVECDAVIS 124

Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
                L       LT+HDI++ KQ + +L+ AK+ AE     KS FLA +SHEIRTPL A
Sbjct: 125 GSYFLLNEEENMVLTVHDITQLKQAEKQLALAKEKAENADLSKSTFLANMSHEIRTPLNA 184

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           I GF+E++              +Y   I  + +L+L +VND+LD+SKIE+G +   +  V
Sbjct: 185 ITGFAEILA----SANTEEEKAQYQEIIKMNADLLLQLVNDILDMSKIEAGTLEFVYTKV 240

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIP--RILADLRSVKQIALNILSNAIHFTP 720
            ++  +S+   L Q+  N+    I+     ++P   I  D   V Q+  N  +NAI FT 
Sbjct: 241 DINLLLSDLRQLFQMKVNDAGGNIQIIAEPSLPSCSIETDRNRVAQVLSNFTTNAIKFTQ 300

Query: 721 SGGQIIISTTHTSNE-EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
            G    IS  + + + E+   V DTG G+   +L +    F ++   +    +GTGLGL 
Sbjct: 301 EG---TISIGYEARDTELYFYVTDTGAGIPADKLPEVFGRFVKLNKDK----KGTGLGLS 353

Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
           ++K +V+   G+    S   KG+      P      P 
Sbjct: 354 ISKTIVNKLEGQIGADSVEGKGSTFWFTIPYRTCGRPE 391


>gi|221639331|ref|YP_002525593.1| sensor protein [Rhodobacter sphaeroides KD131]
 gi|221160112|gb|ACM01092.1| Sensor protein [Rhodobacter sphaeroides KD131]
          Length = 346

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 79/362 (21%), Positives = 145/362 (40%), Gaps = 29/362 (8%)

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
            +LE     + +I  +  I   N    +LFG             ++       +   +  
Sbjct: 8   QLLEGVPLPLVLIGPDERIRVANVPAQRLFGAASVA------RHYVMAMRQPALLDAIEG 61

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575
            + LD       I  G ++E       +   ++   SC      DI+E +Q         
Sbjct: 62  AIRLDRPGRARYIITGPSREVTY-RATVTPVRIHGESCALCAFEDITEQEQM-------- 112

Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
                  + + DF+A VSHE+RTPLTA++GF E ++              +   + R   
Sbjct: 113 ------GAIRRDFVANVSHELRTPLTALLGFIETLQGAARD--DPAARSRFLGIMAREAG 164

Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695
            +  +V DLL +S++ES +      PV +   + +AI+ ++  A    + I+        
Sbjct: 165 RMNRLVQDLLSLSRVESEERVRPKTPVDVTAVIGQAIAALRPMAEAAGVEIQRQGEAGPI 224

Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE------EVILRVRDTGVGMT 749
            +  D   + Q+  N++ NA+ +  SG  + +  +            V + V D G G+ 
Sbjct: 225 LLPGDPDQLTQVFHNLIENAVKYGASGKLVTVGISRDPEGLARLGPAVRIEVVDRGEGID 284

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
              L +  + F ++ N +     GTGLGL + K +V+ + G+F I S   +G+   +  P
Sbjct: 285 AIHLPRLTERFYRVDNHRSREKGGTGLGLAIVKHIVNRHRGRFLIESELGQGSRFIVTLP 344

Query: 810 LY 811
           L 
Sbjct: 345 LA 346


>gi|320355420|ref|YP_004196759.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
           2032]
 gi|320123922|gb|ADW19468.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
           2032]
          Length = 1106

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 96/673 (14%), Positives = 199/673 (29%), Gaps = 50/673 (7%)

Query: 163 LAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK----FSHLHEIKKGHSSVE 218
           LAA P   + R         +              +  ++K    F  + E+       +
Sbjct: 311 LAARPAREQIRNQE------LRREVADRKRAEEELRLSEQKYAAIFRLMPEMAGITRMSD 364

Query: 219 KEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTI 278
               ++            +  +   +          +     ++         +    T 
Sbjct: 365 GCFLEVNDGFIAMTGYEREETLGRTSVGLGLWTQEARAGAMAIIHERGWLENYEFVLTTK 424

Query: 279 NLNQYTKKQYFGTL--QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY 336
           + ++     +   +         F               +         +   P   ++ 
Sbjct: 425 SGDRRDALMFMRPITVWGEDCIYFMAHDITALKQAQQVLETERARLRNLLQTVPAMIWMK 484

Query: 337 SHGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIA 395
               +    N  F             I G       A + +D          ++      
Sbjct: 485 DPDGVYLSCNNRFEQFFGTSEA---HIVGKTDYDFVAREQADFFRAND---RKAIDNGQP 538

Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
                        +   +  I     +     +   G+  +  + +  + ++  E  +  
Sbjct: 539 TINEEWITYAADGHRELLETIKTPIYDDSGRLLGVLGVAWDITEKKRIEEELRTERARFV 598

Query: 456 SILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILRKPFTV-FLEQNTPSVMNHYL 513
           +++++    +   +         +R   +L GYPVE    K F    L       ++ + 
Sbjct: 599 NLVDSVDGIVWEADAHTFAFTYVSRQAERLLGYPVEAWAAKGFWRAHLHPEDREHVSAHA 658

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS-LTMHDISEWKQEKNKLS 572
                      LE   L    E   +   + +        +    M D +  K+E+ +  
Sbjct: 659 QAKTRAGEDHVLEYRFLAENGETVWMQDMVTVVAENGVPRWRRGIMVDTTGRKEEEREKR 718

Query: 573 HAKKIAEKES--SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
             +    +             V+H+    L+ I+G++++ K+ +  P    +   Y N I
Sbjct: 719 RLEAQLRQAQKMEAVGRLAGGVAHDFNNQLSVILGYADLAKSSQPSP---DKMRGYLNQI 775

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
            R+     DI   LL  S+ E+    +  + + L+  V      +      + I      
Sbjct: 776 IRAATQSRDITRQLLAFSRQEA----ISPQVLDLNAVVKGVHKGL-GRLIREDIRFEVRL 830

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT--------------HTSNEE 736
           A+ +  I  D   V Q+ +N++ NA      GG + ++T                T+ + 
Sbjct: 831 ADGLWPIHMDPTQVDQVIMNLVVNARDAMEQGGLLTVTTANVHLDAAFVRHYPEITAGDY 890

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           V L V DTG GM    L    +PF     S    G+GTGLGL     +V  N G   + S
Sbjct: 891 VRLTVSDTGSGMGPETLAHIFEPFYTTKES----GKGTGLGLATIYGIVSQNRGLVLVES 946

Query: 797 TPAKGTLIEIIFP 809
               GT+ ++  P
Sbjct: 947 EVGVGTVFKVFLP 959



 Score =  134 bits (338), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 56/460 (12%), Positives = 124/460 (26%), Gaps = 28/460 (6%)

Query: 126 HIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGF--RGFGI 183
           + +    +   +  +             G  L   +     P+++      G   R +GI
Sbjct: 157 NPEQYAAVRQAMASRRPILAGPHRLVQGGEGLIARV-----PVFTAANRPPGTEPRYWGI 211

Query: 184 VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL 243
           V V    +    +G     K   +   K  H            +      + M   V   
Sbjct: 212 VSVVTRVDALLDVGGVEATKGFAIGLRKVDHQGGPGLILRGEERLFADNPVCMPVNVPGT 271

Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303
                     ++   +P  T  +S L      +++ +  +         +   +      
Sbjct: 272 QWQIC----AVRKGGWPRKTPIDSPLFWIGLLNSLLVAAFIWSLAARPAREQIRNQELRR 327

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPI--PFFVYSHGNLFYANPSFLLLTKYKSVDDIE 361
              +           E          P        S G     N  F+ +T Y+  + + 
Sbjct: 328 EVADRKRAEEELRLSEQKYAAIFRLMPEMAGITRMSDGCFLEVNDGFIAMTGYEREETLG 387

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                  L              + +             L T   +R ++L     P    
Sbjct: 388 RTSVGLGLWTQ-----EARAGAMAIIHERGWLENYEFVLTTKSGDRRDALMF-MRPITVW 441

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
            +         +  +    +  ++ +E E  +L ++L+     I + + +G+ LS N   
Sbjct: 442 GEDC----IYFMAHDITALKQAQQVLETERARLRNLLQTVPAMIWMKDPDGVYLSCNNRF 497

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
            + FG     I+ K    F+ +           + +      T+ +  +    +     L
Sbjct: 498 EQFFGTSEAHIVGKTDYDFVAREQADFFRANDRKAIDNGQP-TINEEWITYAADGHRELL 556

Query: 542 RIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKI 577
             I   +   S           DI+E K+ + +L   +  
Sbjct: 557 ETIKTPIYDDSGRLLGVLGVAWDITEKKRIEEELRTERAR 596



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/376 (7%), Positives = 91/376 (24%), Gaps = 22/376 (5%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTW--YGKTTL 149
            G   E+++      G    + +G     V   L           +  +  W    +  L
Sbjct: 364 DGCFLEVNDGFIAMTGYEREETLGRT--SVGLGLWTQEARAGAMAIIHERGWLENYEFVL 421

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
               G      + +  + ++  +        + + H        + + +    +  +L +
Sbjct: 422 TTKSGDRRDALMFMRPITVWGED------CIYFMAHDITALKQAQQVLETERARLRNLLQ 475

Query: 210 IKKGHSSVEKEKYDIFS--QQSPPPHLRMKNKVSSLTEYYAHKDDVL---KTEKYPLLTS 264
                  ++       S   +        +  +   T+Y     +     +      + +
Sbjct: 476 TVPAMIWMKDPDGVYLSCNNRFEQFFGTSEAHIVGKTDYDFVAREQADFFRANDRKAIDN 535

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP----SLSAYFDEGEN 320
            + ++ E+   +  + ++   +     + ++S      L           +         
Sbjct: 536 GQPTINEEWITYAADGHRELLETIKTPIYDDSGRLLGVLGVAWDITEKKRIEEELRTERA 595

Query: 321 LTPETVDKCPIPFFVYSHGN--LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
                VD      +          Y +     L  Y            + L    +   +
Sbjct: 596 RFVNLVDSVDGIVWEADAHTFAFTYVSRQAERLLGYPVEAWAAKGFWRAHLHPEDREHVS 655

Query: 379 NAIKPVMLYRSD-RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
              +       D        A      W ++    +      +  +          E E 
Sbjct: 656 AHAQAKTRAGEDHVLEYRFLAENGETVWMQDMVTVVAENGVPRWRRGIMVDTTGRKEEER 715

Query: 438 VDTRINKRKMEIEVMQ 453
              R+  +  + + M+
Sbjct: 716 EKRRLEAQLRQAQKME 731



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/284 (8%), Positives = 60/284 (21%), Gaps = 17/284 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTWY 144
            W  D  G     +    +  G     ++G    D       D         +       
Sbjct: 481 IWMKDPDGVYLSCNNRFEQFFGTSEAHIVGKTDYDFVAREQADFFRANDRKAIDNGQPTI 540

Query: 145 GKT-TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
            +    +  +G      ++    PIY  +    G  G  +              +    +
Sbjct: 541 NEEWITYAADGH--RELLETIKTPIYDDSGRLLGVLG--VAWDITEKKRIEEELRTERAR 596

Query: 204 FSHLHEIKKGHSSVEKE-------KYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256
           F +L +   G                    +    P      K       +    + +  
Sbjct: 597 FVNLVDSVDGIVWEADAHTFAFTYVSRQAERLLGYPVEAWAAKGFWRAHLHPEDREHVSA 656

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
                  + E  +  +  F   N      +     +  N    +         +     +
Sbjct: 657 HAQAKTRAGEDHV-LEYRFLAENGETVWMQDMVTVVAENGVPRWRR-GIMVDTTGRKEEE 714

Query: 317 EGENLTPETVDKCP--IPFFVYSHGNLFYANPSFLLLTKYKSVD 358
             +      + +          + G     N    ++  Y  + 
Sbjct: 715 REKRRLEAQLRQAQKMEAVGRLAGGVAHDFNNQLSVILGYADLA 758


>gi|256840790|ref|ZP_05546298.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256738062|gb|EEU51388.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 622

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 102/514 (19%), Positives = 192/514 (37%), Gaps = 42/514 (8%)

Query: 319 ENLTPETVDKCPIPFFVYSHGNL---FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
           + L    +D+ P+  FV    N     Y N     +T  ++ + IE         +A   
Sbjct: 131 QELINTILDRLPLGVFVKDGDNHFNYLYWNHFMEEITGIETRE-IEGHDDFEVNYNALMT 189

Query: 376 SDNNAIKPVML------YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
           ++      + +       R      +AS     I+  +         P   A        
Sbjct: 190 AEERLETDMNVIKTGLTARFKGKVKSASGDYRDIEVAKYPISLNNGKPLVLALWRDITSE 249

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSIL---EATS---DGIAIINREGIILSTNRAVSK 483
                       + K  + I  ++ CSI    ++T    D +  +N        N     
Sbjct: 250 LATENTLRRTRILTKMALRISDIRTCSIFIDPDSTHNFKDSVVTLN------DWNTMSED 303

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD--LRQTLEKITLGSTKEEKLLSL 541
           +        + +        +     ++  T +   +    +   ++     KE     +
Sbjct: 304 MIEVSWGQFISR-----AHPDDQEHYHNMFTRLCRGEISEARIEARMLFPGKKEYVWREV 358

Query: 542 RIIIKKLPFSSCYSLTM---HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
              + +       S+ +    +I E K ++  L  AK  AE     KS +LA +SHEIRT
Sbjct: 359 FATVYERDDKGRPSVILGCSTNIQERKNQELSLEEAKVKAEAADKMKSKYLADMSHEIRT 418

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
           PL AI GFSE++         +   + Y + I  +  L++ ++ND+LDISKIE+  + + 
Sbjct: 419 PLNAITGFSELMA----FADTDEERMSYYDVIKMNNQLLMQLINDILDISKIEADAIKIT 474

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718
           +E + + E +    +  +L      + +      +      D   + Q+  N+++NAI  
Sbjct: 475 YEQLDVSELMDTIYASAKLRVPG-GVKLVLEKEADHHMFGTDSMRLLQLINNLVNNAIKN 533

Query: 719 TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
           T  G  I +      ++++   VRDTG+G+   +L+     F +         EG GLGL
Sbjct: 534 TKEGS-ITMGYAIQPDDQLRFYVRDTGIGIDKEKLKDVFDRFVK----INDYMEGIGLGL 588

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
            + K +V    G  ++ S    G+    I P ++
Sbjct: 589 AICKGLVVKMGGSIHVTSELGVGSEFSFILPSHE 622


>gi|67525287|ref|XP_660705.1| hypothetical protein AN3101.2 [Aspergillus nidulans FGSC A4]
 gi|40744496|gb|EAA63672.1| hypothetical protein AN3101.2 [Aspergillus nidulans FGSC A4]
 gi|259485951|tpe|CBF83407.1| TPA: Histidine kinase D5 [Source:UniProtKB/TrEMBL;Acc:Q6WJ27]
            [Aspergillus nidulans FGSC A4]
          Length = 1879

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 100/659 (15%), Positives = 210/659 (31%), Gaps = 86/659 (13%)

Query: 224  IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY 283
              S + P  +  ++   S+      HK  + + ++     S  S     +          
Sbjct: 781  RLSGKEPDSYFGIQRSKSTRDSSSQHKSRLARVKEAATSPSAISPGKACDTVTQDPNITV 840

Query: 284  TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET----VDKCPIPFFVYS-- 337
                        S        H N+   +    E    T       ++  P+  F+    
Sbjct: 841  PSPHETKPSSIVSPTQTSSRHHSNNSFYAQLQRESRPFTDAVAQLMLNSVPLHLFLAKPQ 900

Query: 338  HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397
             G + + N  F    + +  +        +          +N            +     
Sbjct: 901  SGEVIWTNSKFDAYRRSQPQEQKSRDPWQN----IHDSERDNVATKWAKALLTGSQFTER 956

Query: 398  ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL--- 454
             R+     +        F      +   E +   G   +  +  + + K   E  +    
Sbjct: 957  VRVKRF-NDESAYRWFIFRANPLLSSTGEVLYWIGSFLDIHEQHVTELKAAQEREKFAID 1015

Query: 455  ---CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT------ 505
                +   +    +        ++  N       G  +ED L   F   +  +       
Sbjct: 1016 AKYRAFSNSVPQIVFEATEVRGLIFVNEQWHLYTGQNLEDALNFGFAKHVHHDDLEKCGL 1075

Query: 506  ---------------------------------PSVMNHYLTEILSLDLRQTLEKI---- 528
                                              +   + L E++   +           
Sbjct: 1076 LSIYLASGAQKNATTAQSSEQPPEPSGPRAENQEARFGNRLDELVKRGVASVQRDENGRV 1135

Query: 529  -----TLGSTKEEKLLSLRIIIKKLP------FSSCYSLTMHDISEWKQEKNKLSHAKKI 577
                     +K        + + ++         + +  T  DI++ K  + +L+ A + 
Sbjct: 1136 FYSTEIRLRSKGGDFRWHLVRLVRVETSSFGSGEASWYGTCTDINDRKNLERELNKAMQQ 1195

Query: 578  AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
               +   K+ F + +SHEIRTPL  I+G    I +               + I  S   +
Sbjct: 1196 LNNQMESKTKFFSNMSHEIRTPLNGILGTIPFILDTSLDT----DQRRMLDTIQNSSTNL 1251

Query: 638  LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR- 696
             ++V+++LD+S++E+GKM+L      +   + + I  V   A +K + +      ++P  
Sbjct: 1252 RELVDNILDVSRVEAGKMSLVGSWFHVRSVIEDVIDTVSSRAIDKGLEMNYLMDVDVPPM 1311

Query: 697  ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI---------LRVRDTGVG 747
            ++ D   ++QI +N++ NA+ FT  G +I I  +   +   I           V DTG G
Sbjct: 1312 VIGDRFRIRQILINLVGNAVKFTAQG-EIHIRCSIYHDPNAIHKPTEILMNFDVVDTGKG 1370

Query: 748  MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
             +  + E+ M+ F Q+  +   +  G+GLGL L+K +V+ + G+    S   +G     
Sbjct: 1371 FSAQDAERLMQRFSQLGTNASQQNAGSGLGLFLSKQLVEMHGGRLTPSSKEGQGAKFSF 1429


>gi|332977098|gb|EGK13902.1| sensor histidine kinase BaeS [Desmospora sp. 8437]
          Length = 461

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 72/254 (28%), Positives = 117/254 (46%), Gaps = 8/254 (3%)

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
           +   D  E+ +     +   K  ++    + + +A V+HE+RTPLT + G  E I+ +  
Sbjct: 194 VVSRD--EYGKTAKAFNQMSKQLQQAEEARKNLVADVAHELRTPLTVLQGKLEWIQQR-- 249

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
              G P   E    +      +  +V+DL  +S  E+ K+ L  +P  L   +   I  +
Sbjct: 250 ---GQPVRPENLLPLQDELIRLNRLVDDLHQLSLAEAKKLPLDQKPTDLPVLLRRIIDRI 306

Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
           Q  A+ K + IR      IP I  D   + Q+ LN+L+NA+ +TP GG + +  T     
Sbjct: 307 QPDADRKGVEIRLHCDAGIPPISVDPNRITQVFLNLLTNALRYTPPGGSVKVDITKKKEG 366

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            + ++V DTGVG+    L      F +   S+     G GLGL +AK  V A+ G   + 
Sbjct: 367 -LQIQVSDTGVGIPPEHLPHLFNRFYRTDESRARNRGGMGLGLAIAKEFVLAHHGTIEVE 425

Query: 796 STPAKGTLIEIIFP 809
           S P +GT   +  P
Sbjct: 426 SAPDQGTTFIVELP 439


>gi|323492298|ref|ZP_08097454.1| putative two-component regulatory system multi-sensor hybrid
           histidine kinase [Vibrio brasiliensis LMG 20546]
 gi|323313462|gb|EGA66570.1| putative two-component regulatory system multi-sensor hybrid
           histidine kinase [Vibrio brasiliensis LMG 20546]
          Length = 1197

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 88/455 (19%), Positives = 181/455 (39%), Gaps = 34/455 (7%)

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
            +    V +   D    A   R +          A++ +    +++   +     ++ E 
Sbjct: 260 ASITSQVDIASKDLLRSAVELRTYQKSKLDAAQQAVSTVQLAISDKLAISSSLLLLQTEI 319

Query: 438 VDTRI-------------NKRKMEIEVMQLC---SILEATSDGIAIINREGIILSTNRAV 481
            + +               +   +    +L    ++LE+  + +   + +  + +  +A 
Sbjct: 320 SEAQQTDRDYAMTLNPAQQEELAQAVEQKLTFIVNLLESLYEQVTTADEQLQVDALMQAS 379

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI----TLGSTKEEK 537
            +      + + ++       +   +     L +I  +  +Q                  
Sbjct: 380 EQYLQLFTQLVGQRTQEHQQIERLDTNYQQLLAKIEPIYQQQLDIVENSGSITTKMAFGG 439

Query: 538 LLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
            + L  ++     ++     +       +   KL+ A+  A   +  KSDFLA +SHEIR
Sbjct: 440 AVFLVTLLLLGLLANKSHAALE------RFAAKLAVARDEANSANRAKSDFLANMSHEIR 493

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TP+ AIIG S +                Y + +  S + +L ++ND+LD SKIE+GK+++
Sbjct: 494 TPMNAIIGMSYLALKTDLTKA----QRNYIHKVKLSADSLLGLINDILDFSKIEAGKLDI 549

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAI 716
                 L+  +    +LV L A+E+ + +      ++P  ++ D   + QI +N+ +NA+
Sbjct: 550 EQVDFHLENVLDNISNLVGLRASERGLELLIHIDRDVPTTLVGDPLRLGQILINLANNAV 609

Query: 717 HFTPSGG-QIIISTTHTSNEEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
            FT  G  +I I     + ++++    V D+G+GMT  +  K    F Q  +S   +  G
Sbjct: 610 KFTEKGEIKISIRVVERNGDDLVLQFSVEDSGIGMTPEQTAKLFSKFTQADSSTTRKYGG 669

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           TGLGL ++K +     G   + S   KG+      
Sbjct: 670 TGLGLAISKELSQLMGGDIEVQSEAGKGSCFSFSI 704


>gi|294495906|ref|YP_003542399.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
 gi|292666905|gb|ADE36754.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
          Length = 933

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 87/519 (16%), Positives = 197/519 (37%), Gaps = 37/519 (7%)

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGG 365
                    D   +L     D+     F++S  G +  AN S   +      D + +   
Sbjct: 428 ERGKTYMMLDNTMHLYRSLFDRSNDAIFIHSSEGAIIDANRSACKIIGCSHSDMLSMK-- 485

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCI-----------AASARLHTIQWNRENSLAMT 414
           ++ L              V    ++ +                  + +   ++EN++ ++
Sbjct: 486 IADLYPQESRYVAQLKSAVQSTFNEGSTRFESKMKHMNNSIIDVEISSSMLDKENNIMLS 545

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII 474
            +      +  E   ++  +  +        +++     + ++ +    GI ++N++  +
Sbjct: 546 IVRDITERKKYELELESYRKNLEELVDQRTSELQTANSWVSALYDNAPIGIGVLNKDLEL 605

Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQN-----TPSVMNHYLTEILSLDLRQTLEKIT 529
           +  N+ +++L G P E I+ K       +         +    L +  S +L     K  
Sbjct: 606 IDLNKGMTELTGIPREKIVGKSLFSIFTEGSSNYIDKDLGVSILEKQFSTELHWLCNKKH 665

Query: 530 LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
           +      + L L+   KK         T  DI+  KQ +  L       EK +  K  F 
Sbjct: 666 ICIQFNSQPLGLKDSPKK------VIFTAQDITRRKQAEIALKDYAGQLEKSNEMKDLFT 719

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
             + H++  P   + GF++++           + I + + I  +   ++D++ +   +SK
Sbjct: 720 DIMRHDLLNPANIVKGFTDILIKNE----KEEKKIHFLSRIRDNTERLIDMIENTAYLSK 775

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709
           +ES +  L  + + L   ++  IS +   A  + + I        P + A+   +K++ +
Sbjct: 776 LESTE-TLELQKMDLGRVLTSCISEMTPLAENENMGITYDLQQPYP-VQANPV-IKEVFI 832

Query: 710 NILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
           N+LSNAI ++P    I +      ++   + ++D G G+ + +       F +       
Sbjct: 833 NLLSNAIKYSPPESSIHVGVQ-EKDDSFKVMIKDKGFGIADDDKPYIFNRFSRAQKG--- 888

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTP-AKGTLIEII 807
             +GTGLGL + K +V+ + G   +   P  KG++  + 
Sbjct: 889 SIKGTGLGLAIVKRIVELHGGSVGVEDNPGGKGSVFWVY 927



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/139 (15%), Positives = 43/139 (30%), Gaps = 3/139 (2%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK 146
           +++++ G +  IS ++ +  G +  +MI     D      ++   +I + +   +    K
Sbjct: 148 YSLNSEGNIVYISPKVQEY-GLHPDQMIFRPFTDYIYADDMEEWLNIFNNITSVDHLPLK 206

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
             +                 PIY     F G  G  IV       +     +   + F  
Sbjct: 207 AQIRIQNDNQELHWFQNHIDPIYDEMGNFMGING--IVREINRRKEAELHSQEQSEAFRF 264

Query: 207 LHEIKKGHSSVEKEKYDIF 225
           L            E  D+ 
Sbjct: 265 LARACNQFVDPFFEDIDLL 283



 Score = 47.3 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/150 (13%), Positives = 56/150 (37%), Gaps = 6/150 (4%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
           + +++        +L +T++    +N EG I+  +  V + +G   + ++ +PFT ++  
Sbjct: 126 EIELKRARYDYDFLLGSTNEIPYSLNSEGNIVYISPKVQE-YGLHPDQMIFRPFTDYIYA 184

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS----LTMH 559
           +      +    I S+D    L+         ++L   +  I  +             + 
Sbjct: 185 DDMEEWLNIFNNITSVD-HLPLKAQIRIQNDNQELHWFQNHIDPIYDEMGNFMGINGIVR 243

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
           +I+  K+ +       +     +   + F+
Sbjct: 244 EINRRKEAELHSQEQSEAFRFLARACNQFV 273


>gi|323526815|ref|YP_004228968.1| multi-sensor signal transduction histidine kinase [Burkholderia sp.
           CCGE1001]
 gi|323383817|gb|ADX55908.1| multi-sensor signal transduction histidine kinase [Burkholderia sp.
           CCGE1001]
          Length = 437

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 78/412 (18%), Positives = 164/412 (39%), Gaps = 35/412 (8%)

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK-----RKMEIEVMQLCSILEATS 462
                   +      + P      G     +     +     R++E +  +    ++A+ 
Sbjct: 49  HKERLWRLLDAPVYGEVPSAPGIWGEIYYRLHKLAKRWHAQVRQVEQQHSRFIQAIQASP 108

Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522
           +G+A+++    I   N      FG   +  LR+  T  + Q       +           
Sbjct: 109 NGVAMLDDHDQIEWCNAISEVHFGLDAKRDLRQHITHLVRQPDFVRYLN----------S 158

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES 582
              E++ +     EK  ++  +       +   +   DI+E ++                
Sbjct: 159 HQYEEMLIMRGMGEKRQNVLSVQVFPYGENRKLVLSQDITELERT--------------D 204

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
           + + DF+A VSHE++TPLT + GF E ++     PL       Y + +++  + +  IVN
Sbjct: 205 AMRRDFVANVSHELKTPLTVLSGFLETMRE---LPLAEAERTRYLDLMEQQASRMRHIVN 261

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702
           DLL ++K+E        + + +   +       +  +++    I      ++  +     
Sbjct: 262 DLLVLAKLEGDNKPPSDQMIDMRAVLRHLRDDAESLSSDHH-TITFEADESL-TVTGVET 319

Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
            +     N+++NAI +TP GG I +S   T     +  V D+G+G+   ++ +  + F +
Sbjct: 320 EILSAFGNLVTNAIRYTPDGGTIKVSW-LTQGGAAVFAVTDSGLGIPAADIPRLTERFYR 378

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           +  S+     GTGLGL + K ++  +  +  + S   +G+   + FPLY T+
Sbjct: 379 VDRSRSRDTGGTGLGLAIVKHVLQRHDAQLDVKSEEGRGSTFSVRFPLYRTA 430


>gi|209883796|ref|YP_002287653.1| phosphate regulon, two-component sensor histidine kinase
           [Oligotropha carboxidovorans OM5]
 gi|209871992|gb|ACI91788.1| phosphate regulon, two-component sensor histidine kinase
           [Oligotropha carboxidovorans OM5]
          Length = 433

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 73/360 (20%), Positives = 149/360 (41%), Gaps = 25/360 (6%)

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
            +++ A  +   +++R G +L  N   +++   P                  + +   + 
Sbjct: 86  RAVIAAMPEPTVLLDRVGRVLHLNAQAAQI--APALRHRELALFALRSPEIIAALRDAIA 143

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA 574
                     +E++ +    E  +  L++  +     +C+ +T  D +  ++ +      
Sbjct: 144 -TREPQRATYVERVPVERWMELAVTPLQVPTEFGGIDNCFLMTFRDQTPLRRAEE----- 197

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE-YANYIDRS 633
                     ++DF+A  SHE+RTPL A+ GF + ++        +P+  E +   +   
Sbjct: 198 ---------MRADFVANASHELRTPLAALSGFIDTLQ---GPARDDPKARERFLGIMHAQ 245

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693
              +  +++DLL +S++E          V L   + + +  +++ A E+ ++I T     
Sbjct: 246 ATRMARLIDDLLSLSRVELSAHVRPEARVDLVAILRQVVDGLEVLAGERGVVIETQLPEG 305

Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH----TSNEEVILRVRDTGVGMT 749
              I  D   + ++  N++ N + +  SGG++ +S T         EV + VRD G G+ 
Sbjct: 306 PVFISGDTEELLRVFENLIENGLKYGASGGRVTVSLTQVSPDEGTPEVRVAVRDYGPGIA 365

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
              L +  + F +          GTGLGL LAK +V  + G+  I S   KG    + FP
Sbjct: 366 PEHLPRLTERFYRTDVGDSRAQGGTGLGLSLAKHIVSRHGGRLLIESVFGKGATFTVCFP 425


>gi|327308180|ref|XP_003238781.1| serine/threonine protein kinase [Trichophyton rubrum CBS 118892]
 gi|326459037|gb|EGD84490.1| serine/threonine protein kinase [Trichophyton rubrum CBS 118892]
          Length = 2415

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 73/251 (29%), Positives = 134/251 (53%), Gaps = 12/251 (4%)

Query: 565  KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
            K  + + +H  K+ E  +  KS FLA +SH++RTP+T +IG SE++K  +     +P+  
Sbjct: 1866 KIAEVEANHNVKLKEDAAKAKSIFLANISHDLRTPMTGVIGLSELLKATKL----DPKQD 1921

Query: 625  EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
             Y   I    + +L ++ND+LD SK+E+GKM +   P++L + ++E +  ++    EK +
Sbjct: 1922 VYVESIRVCADTLLTLINDILDFSKLEAGKMKVSIVPINLRQTIAEVVRALRYTHREKGL 1981

Query: 685  LIRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVI 738
                   +  P   ++ D   + QI +N+LSN+  FTP G  + +      +      V 
Sbjct: 1982 DTVEDLDSIDPDLLVMGDPVRLHQIFMNLLSNSYKFTPVGS-VTVRAIVEEDTPEKIRVT 2040

Query: 739  LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA-NMGKFYIFST 797
             +V DTG+G++  +L++  +PF Q  +S      G+GLGL + KA+++    G+ ++ S 
Sbjct: 2041 CKVADTGIGISEEQLDRLFRPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGRIWLQSK 2100

Query: 798  PAKGTLIEIIF 808
              +GT +    
Sbjct: 2101 EGEGTTVTFTL 2111


>gi|160936268|ref|ZP_02083641.1| hypothetical protein CLOBOL_01164 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441078|gb|EDP18802.1| hypothetical protein CLOBOL_01164 [Clostridium bolteae ATCC
           BAA-613]
          Length = 1122

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 98/380 (25%), Positives = 169/380 (44%), Gaps = 16/380 (4%)

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVED--ILRKP 496
                R+          +     + I I + E G I   +R   ++ G        +   
Sbjct: 341 RANASREAVRRDRIFTLMTHYVPNVIVIADSESGAIEYASRNTEQVLGIEDAFGNAIEDK 400

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--- 553
           F   +  +    +   ++ +   D      K+       +K + L +    +        
Sbjct: 401 FLSCISGSDRQAVLDLISRVRKGDCASGSLKLHFTRPDIQKDIVLSLNAYLISEQDSSQR 460

Query: 554 -YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
             ++T+ DI+E +Q + +L  A +   + ++ KS FLA +SH+IRTPL A+IG + +   
Sbjct: 461 FITVTLEDITEREQSRRRLEEALESEARANAAKSTFLASMSHDIRTPLNAVIGLTNLAL- 519

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
             + P  + +  E    I  S  L+L ++ND+LD+SKIESGKM L      L E +S  +
Sbjct: 520 --YSPEDSKKVTECLQKIANSSQLLLGLINDVLDMSKIESGKMQLAETEFELGEWLSGVV 577

Query: 673 SLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
           ++ Q     +      +  N    +L  D   + Q+  N+L NA+ FTP  G+I +  T 
Sbjct: 578 TVTQSQTGVRSQHFDVNVWNITHELLCGDTVRLGQVLTNVLGNAVKFTPKDGEIYLDITE 637

Query: 732 TSNEE-----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
             +++      + RV DTGVGM+   + +  + F +  NS +   +GTGLG+ + K +VD
Sbjct: 638 VPSQDPSFASFVFRVSDTGVGMSREYMGRIFEMFSRDQNSYKQGIQGTGLGMAITKRIVD 697

Query: 787 ANMGKFYIFSTPAKGTLIEI 806
              G   + S P KGT   I
Sbjct: 698 LMGGTIRVESEPEKGTTFTI 717



 Score = 40.8 bits (94), Expect = 0.98,   Method: Composition-based stats.
 Identities = 17/153 (11%), Positives = 46/153 (30%), Gaps = 5/153 (3%)

Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH--GNLFYANPSFLLLTKYKSVDD 359
            L      + S      + +        P    +     G + YA+ +   +   +    
Sbjct: 335 MLVFVVRANASREAVRRDRIFTLMTHYVPNVIVIADSESGAIEYASRNTEQVLGIEDA-- 392

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
                     L     SD  A+  ++       C + S +LH  + + +  + ++   + 
Sbjct: 393 -FGNAIEDKFLSCISGSDRQAVLDLISRVRKGDCASGSLKLHFTRPDIQKDIVLSLNAYL 451

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
            + Q            +  +   ++R++E  + 
Sbjct: 452 ISEQDSSQRFITVTLEDITEREQSRRRLEEALE 484


>gi|297570384|ref|YP_003691728.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296926299|gb|ADH87109.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 567

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 87/492 (17%), Positives = 170/492 (34%), Gaps = 46/492 (9%)

Query: 314 YFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
              + ++      D   +    +    N+   N     L       DI        +  A
Sbjct: 81  ELQQAKDELEAIFDTTGVGISIIDRDFNVQRCNEKQRQLLVDPDRPDIIGHSCFE-IYCA 139

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
                                      L      +     +   PF   +          
Sbjct: 140 RDSPGMGCPAMETFATGRPA-------LVRDVKKKNKYFNVITTPFA-KDADGTVSQVIE 191

Query: 433 IEPEDVDTRINKRKMEIEVM-------QLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
           +  +  D +  +   + +         +L +++E+ S+G+ ++N EG+I + N A   + 
Sbjct: 192 VALDITDKKQAELAEQQQRQYYLQEKNKLATVIESLSEGLLVVNPEGVITTCNHAAVDIS 251

Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII- 544
           GYP E ++ +                 L E+L+   ++         T   +   L    
Sbjct: 252 GYPEEALMNQALAGPFP---------ALAELLATG-QEPSGTEFTHRTPAGEERLLSADS 301

Query: 545 ---IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
                         +T  DI+  K++   L  A+K+A           A V+HE+ TPL 
Sbjct: 302 NRMPAPPGEGVGRVITFRDITTEKKKAQMLFRAEKLA-----AIGQLSAGVAHELNTPLA 356

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           +I+G++ ++              E    I         I+  LL  ++ E+ +     + 
Sbjct: 357 SILGYARLLIKDDNLTSA---QQERLEIIAEQTRRSSTIIKALLSFAR-EARQPGRTRQA 412

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
             L+  + +AI L+     ++RI +       +P ++AD   ++Q+ +N++ N +     
Sbjct: 413 CDLNGIIEKAIPLLTTDLEKRRIELELELQP-LPPVIADPGELEQVVINLVLNGMQAIGQ 471

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
            G+I +ST+      V+L+V D G G+T     +   PF          GEGTGLGL + 
Sbjct: 472 EGRIRVSTSTQEQN-VLLQVADNGPGITPEHRSRIFDPFYSTKP----VGEGTGLGLSIC 526

Query: 782 KAMVDANMGKFY 793
             ++    G   
Sbjct: 527 AGIIGDLGGSIE 538



 Score = 41.6 bits (96), Expect = 0.58,   Method: Composition-based stats.
 Identities = 22/256 (8%), Positives = 57/256 (22%), Gaps = 32/256 (12%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ++  G +   +       G     ++   L          P   + +LL       G   
Sbjct: 234 VNPEGVITTCNHAAVDISGYPEEALMNQALA--------GPFPALAELLATGQEPSGTEF 285

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                     +   L+A           G            +   +A      +K + + 
Sbjct: 286 THRTPAGEERL---LSADSNRMPAPPGEGVGRVITFRDITTEK-KKAQMLFRAEKLAAIG 341

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           ++  G                          +          D++   ++  L    E +
Sbjct: 342 QLSAGV---------------AHELNTPLASILGYARLLIKDDNLTSAQQERLEIIAEQT 386

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
                    +       +Q        ++++ +              D  +      ++ 
Sbjct: 387 RRSSTIIKALLSFAREARQ-----PGRTRQACDLNGIIEKAIPLLTTDLEKRRIELELEL 441

Query: 329 CPIPFFVYSHGNLFYA 344
            P+P  +   G L   
Sbjct: 442 QPLPPVIADPGELEQV 457


>gi|256843982|ref|ZP_05549469.1| signal transduction histidine kinase [Lactobacillus crispatus
           125-2-CHN]
 gi|256613887|gb|EEU19089.1| signal transduction histidine kinase [Lactobacillus crispatus
           125-2-CHN]
          Length = 552

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 79/366 (21%), Positives = 158/366 (43%), Gaps = 40/366 (10%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            ++     +L ++ +A  +G+ +I+ +  IL +N AV  L G    D L       +++N
Sbjct: 215 EQLHHREKELKTVTDAMQEGLILIDLDDWILLSNPAVVSLLGLHDTDPLPDDVKEIIDKN 274

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISE 563
           +       +                    +  + + +              S+ + D++E
Sbjct: 275 SRLAHTEGI------------------VERNGRNIQISASPIISRKILKGTSILVVDVTE 316

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
              E+                + +F A VSHE++TPL +I+G +E+++N     + +   
Sbjct: 317 EYHEEQV--------------RREFTANVSHELKTPLQSIMGSAELLENHL---VKDEDR 359

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
             +   I  S   +L +++D++ +S ++  +       ++L   V+E +  +Q  A    
Sbjct: 360 DGFYKKIHESSAQLLTLIDDIIRLSHLDENQ-RFEEIKLNLKSPVTEVLEALQGSAYRHG 418

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
           I + T+ ++    ILA+ R V +IA N++ N+I +    G+  I+       + IL+V D
Sbjct: 419 IKLETNLSDT--MILANFRLVYEIAYNLIDNSIRYNKEKGKTKITVK-EHRGQAILQVAD 475

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TG+G+      +  + F ++  S   +  GTGLGL + K  V    G   + S   KG+ 
Sbjct: 476 TGIGIPQEAQNRIFERFYRVEKSHSRKTGGTGLGLSIVKHAVQQCHGTIRLESELGKGST 535

Query: 804 IEIIFP 809
             +IFP
Sbjct: 536 FTVIFP 541


>gi|262199162|ref|YP_003270371.1| multi-sensor signal transduction histidine kinase [Haliangium
           ochraceum DSM 14365]
 gi|262082509|gb|ACY18478.1| multi-sensor signal transduction histidine kinase [Haliangium
           ochraceum DSM 14365]
          Length = 571

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 79/364 (21%), Positives = 156/364 (42%), Gaps = 31/364 (8%)

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
           +  E  +  ++LE  ++ +  ++ +  I   N A  +L     + +   PF   +     
Sbjct: 236 LAAERARFKAVLEGMNEAVITLDDQRRITLINHAAIRLLAVDGDPL-GLPFIELVRTPAI 294

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQ 566
             +      +      +  E    G+        ++  I      +   L MHD+++ ++
Sbjct: 295 HKL------LAEGSDIEVCEFELPGTPPRR----IQARITPPDEGTNRILVMHDVTDIRK 344

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY-IE 625
            +                + DF+A VSHE+RTP++ I   SE + +   G + +P Y   
Sbjct: 345 LETV--------------RRDFVANVSHELRTPVSIIRANSETLID---GAMSDPVYGQR 387

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
               + R+   +  +V+DLLD+S++E+ +     + +SL EAV  A+  V+  A  K I 
Sbjct: 388 LLAALHRNSERLSRLVDDLLDLSRLEANRYQFERDELSLAEAVRRAVDSVERSAQSKSIE 447

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +     + + R+  D +++ QI +N L NAI +TP  G++ I       + V + V D G
Sbjct: 448 LSCEIDDEL-RVRTDPKALDQILVNYLDNAIKYTPKDGRVRIEVQL-DADTVRVDVVDNG 505

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
            G+     ++  + F ++   +     GTGLGL + K + ++  G   +      G+   
Sbjct: 506 PGIAPQHRKRIFERFYRVDPGRSRDMGGTGLGLSIVKHLAESLEGDAGMEPAKPHGSRFW 565

Query: 806 IIFP 809
           +  P
Sbjct: 566 LSLP 569


>gi|260587105|ref|ZP_05853018.1| sensor histidine kinase [Blautia hansenii DSM 20583]
 gi|260542595|gb|EEX23164.1| sensor histidine kinase [Blautia hansenii DSM 20583]
          Length = 549

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 74/368 (20%), Positives = 149/368 (40%), Gaps = 31/368 (8%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
                    +  +   I E   +G  +I++   +LS N +  KL G       +   T+ 
Sbjct: 211 HREIEDARKQQEEFSLITENMEEGFLVIDKHTEVLSYNSSALKLLGDSKWQGRQSILTLN 270

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK-KLPFSSCYSLTMH 559
             +    ++   L                      E+   +      +    +   + + 
Sbjct: 271 RSEEFQGIVEQVLEG----------HHTVRMMEFPERSCQIAANPVWQGKEVTGAVIIIL 320

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           D++E  + +                + +F A VSHE++TPLT+I GF+E+IK+   G + 
Sbjct: 321 DVTERMRGE--------------QLRREFTANVSHELKTPLTSISGFAEIIKD---GFVK 363

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
                 +A+ I +    ++ +VND++ IS+++ G++    E V L +   E +  ++  A
Sbjct: 364 PEDTKVFASRIFKEAQRLITLVNDVIKISQLDEGEIVYQKEQVDLYQLSKEVLHRIEHSA 423

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
            EK + +    ++   ++      + ++  N+  N + +   GG + ++     N +V +
Sbjct: 424 KEKDVKLYLEGSH--VQVSTVRMILDEVLFNLCENGLKYNKQGGSLTVTLK-EENNKVEI 480

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V DTG+G+   E  +  + F ++  S      GTGLGL + K        K  + STP 
Sbjct: 481 SVEDTGIGIPEGEQSRVFERFYRVDKSHSKAIGGTGLGLSIVKHGCMYLGAKVDVESTPG 540

Query: 800 KGTLIEII 807
            G+   I 
Sbjct: 541 VGSKFTIT 548


>gi|254429345|ref|ZP_05043052.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Alcanivorax sp. DG881]
 gi|196195514|gb|EDX90473.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Alcanivorax sp. DG881]
          Length = 771

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 77/243 (31%), Positives = 129/243 (53%), Gaps = 8/243 (3%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  A+K A K S  KS+FLA +SHEIRTPL  I+GF++++      P    R  +Y + 
Sbjct: 270 ELDMARKEALKASHIKSEFLANMSHEIRTPLNGILGFTKLLDRSPMTP----RQEDYLST 325

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I +S   +L I+ND+LD SKIE+GK++L   P++L + + +  +L+   A E+ +     
Sbjct: 326 IHKSAESLLAIINDVLDFSKIEAGKLSLDHTPLNLHDLIEDVQTLLAPMAQERGLEQAAI 385

Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILRVRDTG 745
             +++P  +L D   ++Q+  N++SNAI FT  G  ++ +           + + V DTG
Sbjct: 386 IYSDVPVALLGDPLRIRQVLTNLVSNAIKFTDQGSVVVRAMLEEDRGAEAIIKITVTDTG 445

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
            G+     +     F Q   S + +  GTGLGL ++K +V+   G+  I S   +G+   
Sbjct: 446 PGLNPEAQKDLFSAFTQADQSARRQEGGTGLGLAISKRLVEGMGGEIGIDSREGRGSTFW 505

Query: 806 IIF 808
              
Sbjct: 506 FTL 508


>gi|186682973|ref|YP_001866169.1| GAF sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186465425|gb|ACC81226.1| GAF sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 2198

 Score =  281 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 88/460 (19%), Positives = 173/460 (37%), Gaps = 37/460 (8%)

Query: 370  LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF-IPFEKANQFPENM 428
            L +              +  +      +     I      S  +       +A+     +
Sbjct: 1323 LISSYAYRERRHLANRFHLGEGLVGQCALEKERILLTDVPSDYVRIASGLGEASPLNAVV 1382

Query: 429  PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
                 E +               + L +  +  ++ IAI+         N   + +    
Sbjct: 1383 LPVLFEGQVTAVIELASFRRFSEIHL-TFFDQLTESIAIV--------LNTIAASM---R 1430

Query: 489  VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
             E++L++  ++  E  T         + L    +       L      +   L+    +L
Sbjct: 1431 TEELLKQSQSLAEELQTQQNELRETNKRLEQQAQSLKTSEDLLK---GQQEELQQTNAEL 1487

Query: 549  PFSSCYSLTMHDISEWKQEKNK-----LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
               +          E K  + +     L    +     S +KS+FLA +SHE+RTPL ++
Sbjct: 1488 EEKAELLAMQKKEVERKNREIEQARMSLEDKAEQLALSSKYKSEFLANMSHELRTPLNSL 1547

Query: 604  IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
            +  ++++ +     L   + +EY+  I  +G  +L ++ND+LD++KIESG M++    + 
Sbjct: 1548 LILAKLLADNIDNNLTT-KQVEYSQTIYSAGTDLLALINDILDLAKIESGTMSIDMTQMP 1606

Query: 664  LDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSG 722
            L E   +     +  A  K +     F  ++P  I  D++ ++Q+  N+LSNA  FT  G
Sbjct: 1607 LVELGEQIERTFRQVAQSKGLAFTIEFTPDLPTTIYTDIKRLQQVLKNLLSNAFKFTEQG 1666

Query: 723  GQIIISTTHTSNEE-------------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
             ++ +                      +   V DTG+G+   + +   + F Q   S   
Sbjct: 1667 -EVRLQIAVAKQGWSNDQVTLNRAQNVIAFSVSDTGIGIAPDKQKVIFEAFQQADGSTSR 1725

Query: 770  RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            R  GTGLGL +++ +     G+  + S P +G+     FP
Sbjct: 1726 RYGGTGLGLSISREIARLFGGEIKLTSQPGQGSTFTFFFP 1765


>gi|296137700|ref|YP_003644944.1| Conserved hypothetical protein containing histidine kinase domain
            [Salinibacter ruber M8]
 gi|295981869|emb|CBH22827.1| Conserved hypothetical protein containing histidine kinase domain
            [Salinibacter ruber M8]
          Length = 1618

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 136/822 (16%), Positives = 243/822 (29%), Gaps = 119/822 (14%)

Query: 87   WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK 146
            W  D        S+ + +         I     D+   L          LL+   T   +
Sbjct: 821  WEADLQTGEVNWSDRIYEIHEMEPGAEI-----DLEKGLSFYTPESRERLLEATETLVEE 875

Query: 147  TTLWPIE-----GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
               + +E            I +A  P  S      G     I  V     D     +   
Sbjct: 876  GRPYDLELQIETAEGNRRWIRVAGAPAESPGGPAEG----EITKVAGALQDITERKEEKR 931

Query: 202  KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
            ++   +  +  G   V  E       +       M  +       +    ++  T    +
Sbjct: 932  RRKQVISRVTDGILKVNSEWRVTLVNEQAEAAYGMSEEKMLGRSLWDVFGELEGTRFEEV 991

Query: 262  LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
                  S    E     +               +    F +              E +  
Sbjct: 992  YRKAMRSREPAEIEEHYSGMGEWFDVQVYP-NGDGGLDFYFRVITERKEREEALREAKRR 1050

Query: 322  TPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
                ++  P         +L Y       +      +++  +     L +          
Sbjct: 1051 YQTLIENFPDGGAFLFDEDLRYVLAGGEKIGVVGGPEEVIGSTVREVLPEEI----AERQ 1106

Query: 382  KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
                    +               +      +  +P    +             +  + R
Sbjct: 1107 ARYFRRALEGKRCDFEEE------HGGRRYRVQALPVWNED--GTVSSGIAFAQDITERR 1158

Query: 442  INKR---------------------KMEIEVMQLCSILEATSDGIAIIN---REGIILST 477
              K                      ++E +        E  S G    +    EG     
Sbjct: 1159 RRKEKLKQRKEELKRKKEELKQRKKELERKNDLFERAQEIASVGAWEHDLRADEGN---W 1215

Query: 478  NRAVSKLFGYPVE-DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
                 ++ G+P++ D   +             +   L E +       LE        E 
Sbjct: 1216 TEKAYEILGHPLDADANPEDSLRHYHPEDQPRVREALMEAVENGKSSDLEVRVGSDGDEV 1275

Query: 537  KLLSLRIIIKKLPFSS-----CYSLTMHDISEWKQEKNKLSHAKKIAEKE---------- 581
            + + +R   ++   +          T+ DI++ K+ +  L  AK+  E+           
Sbjct: 1276 RWVRIRGEPQREDGNPEGEVARIRGTIQDITDRKEREEALRAAKEETERSRKEAEEARQE 1335

Query: 582  -------------------------SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
                                     S  KS  LA +SHEIRTPLT+IIGF+E++  +  G
Sbjct: 1336 AEEARQEAEEAKEEAEEARREAEEASRLKSALLANMSHEIRTPLTSIIGFAEMLGREAAG 1395

Query: 617  PLGNPR--YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                       YA+ I+RSG  +L+ +N +L++SK+++G+M +   PV L E    A   
Sbjct: 1396 LELPEESPLPGYASTIERSGKRLLETLNGVLNLSKLQAGQMEMEAGPVDLSEQARLAAGE 1455

Query: 675  VQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
            ++  A EK I +      +   +  AD   V+ +  N+LSNAI +T  GG + + T    
Sbjct: 1456 LRPEAEEKEISLELETGGDPAALAEADEGGVQIVLRNLLSNAIKYTDEGG-VTVRTYRED 1514

Query: 734  NE--------------------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
             +                      +L V DTG+GM     E   KPF Q         EG
Sbjct: 1515 GDQEDGDQKDRDQEDGNPQEDIWAVLEVEDTGIGMDPEVAEGLFKPFRQASEGLSREYEG 1574

Query: 774  TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            TG+GL + +  V    G   + +   +GT + +  PL   + 
Sbjct: 1575 TGIGLAVTREAVAQMGGSVEVDTQKGQGTCMTVRLPLAGETE 1616



 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 50/409 (12%), Positives = 112/409 (27%), Gaps = 40/409 (9%)

Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD 251
           +    G+ L +    L     G S   +      S +        ++           ++
Sbjct: 285 EEEIAGRHLKEALPRLARALNGESPGAEPSGKNPSGKELEGKKGPEDNEGPEDNEELREN 344

Query: 252 DVLKTEK-YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310
                EK      S E  L E              +   G            +  ++   
Sbjct: 345 GRRSEEKFSAEKPSAEEKLLEVPAGGGEARYYRPVESQAGRGAGRL------VVLQDVTE 398

Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVD-------DIEI 362
                 E  +      ++ P    V+   G +  ANP F   T ++  D       D++ 
Sbjct: 399 RELRRRERASRLEALFNQSPDMINVHDAEGRILEANPRFFEKTGHEEEDLQGMKVWDLDR 458

Query: 363 AGGLSTLLD--APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
           +      L+  A     +         R D +       +  ++   +            
Sbjct: 459 SISREEALELWAGMEPGDRRRLEGTYRRKDGSAFPVEVDIRRLRLEGKGQFM-------- 510

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG---IILST 477
                       I  +  D ++ +RK++ E  +L ++ E+    +     EG    +   
Sbjct: 511 -----------AISRDITDRKVAERKLQRERDRLETLFESLPSPVVRCRAEGGRATVEEA 559

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
           N A ++ F    E+   +     L           +      +     E   + +  E +
Sbjct: 560 NPAFAETFPIGQEEAEGQDLNDLLVPAGQKDAAAEIDRRAVEEGPVEHEVRRVAAGGEVR 619

Query: 538 LLSLRIIIK-KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
              L++  +              DI++ K+ + +L  A+ + +      
Sbjct: 620 DFQLQVAGRQPEEGPPEIYAIYTDITDRKRRERRLQRAEALFQNAQDAL 668



 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 52/517 (10%), Positives = 128/517 (24%), Gaps = 61/517 (11%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           DA G + E +    +  G+    + GM++ D+   +  +    +   ++  +    + T 
Sbjct: 425 DAEGRILEANPRFFEKTGHEEEDLQGMKVWDLDRSISREEALELWAGMEPGDRRRLEGTY 484

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
              +G+   V +D+  L +  +  +F       I              +R   +   L E
Sbjct: 485 RRKDGSAFPVEVDIRRLRLEGK-GQFM-----AISRDITDRKVAERKLQRERDRLETLFE 538

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
                    + +    + +   P       +          +D+L         +E    
Sbjct: 539 SLPSPVVRCRAEGGRATVEEANPAFAETFPIGQEEAEGQDLNDLLVPAGQKDAAAEIDRR 598

Query: 270 P------EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
                  E E        +    Q     +   +   E  +     +     +       
Sbjct: 599 AVEEGPVEHEVRRVAAGGEVRDFQLQVAGRQPEEGPPEIYAIYTDITDRKRRERRLQRAE 658

Query: 324 ETVDKCPIPFFVYS-------------------------------HGNLFYANPSFLLLT 352
                     F+                                   ++   NP+F   T
Sbjct: 659 ALFQNAQDALFIVDVESGGASDGGASGSRDGAAREQGGAPGEGGLSFSVRRVNPAFEGKT 718

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
             +S +D+        +  A   ++        + R +         +         +  
Sbjct: 719 GLES-EDLRGKDPKE-VFGAEVGAEIEEKYRECIRREEPMEYGEEVPI------GGETTY 770

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE- 471
            T      A    E     G      + R  +  +  +   L    +    G    + + 
Sbjct: 771 WTTRIAPVAAG-GETQMIIGTARNVTEDRRREETLRRQKSLLEQTQKLA--GAWEADLQT 827

Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
           G +  ++R        P  +I  +    F    +   +      ++       LE     
Sbjct: 828 GEVNWSDRIYEIHEMEPGAEIDLEKGLSFYTPESRERLLEATETLVEEGRPYDLELQIET 887

Query: 532 STKEEKLLSLRIIIKKLPFSSC------YSLTMHDIS 562
           +    + + +     + P           +  + DI+
Sbjct: 888 AEGNRRWIRVAGAPAESPGGPAEGEITKVAGALQDIT 924



 Score = 88.9 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 49/401 (12%), Positives = 103/401 (25%), Gaps = 33/401 (8%)

Query: 181 FGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV 240
            G   +       +  G +L   F         ++      Y +     P          
Sbjct: 165 VGFCMLAEPLRRAQVGGGKLAGLFGLTALPLGANAIGYATPYLLDLSHEPVGVAAFALGA 224

Query: 241 SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF 300
            +L      +      E+ P L        +  +     L    ++            S 
Sbjct: 225 FALKRGQLEEASRAGREERPSLVLSAGGRVQNYNQAAAELLPALREGIPQ-----EGTSE 279

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDI 360
           E        +     +    L      + P              NPS   L   K  +D 
Sbjct: 280 EGTPQEEEIAGRHLKEALPRLARALNGESPGA-------EPSGKNPSGKELEGKKGPEDN 332

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
           E       L +  + S+                 +A  +L  +      +          
Sbjct: 333 EGPEDNEELRENGRRSEEKFSAEKP---------SAEEKLLEVPAGGGEARY----YRPV 379

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
            +Q      +  +  +  +  + +R+    +    ++   + D I + + EG IL  N  
Sbjct: 380 ESQAGRGAGRLVVLQDVTERELRRRERASRLE---ALFNQSPDMINVHDAEGRILEANPR 436

Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
             +  G+  ED+            +          +   D R+          K+     
Sbjct: 437 FFEKTGHEEEDLQGMKVWDLDRSISREEALELWAGMEPGDRRRL---EGTYRRKDGSAFP 493

Query: 541 LRIIIKKLP--FSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579
           + + I++L       +     DI++ K  + KL   +   E
Sbjct: 494 VEVDIRRLRLEGKGQFMAISRDITDRKVAERKLQRERDRLE 534



 Score = 81.2 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 45/445 (10%), Positives = 105/445 (23%), Gaps = 51/445 (11%)

Query: 179 RGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKN 238
           RG G + V +   +     +    +   L        +V   +  I              
Sbjct: 385 RGAGRLVVLQDVTERELRRRERASRLEALFNQSPDMINVHDAEGRILEANPRFFEKTGHE 444

Query: 239 KVSSLTEYYAHKDDVLKTEKY-PLLTSEES--SLPEQEDFHTINLNQYTKKQYFGTLQNN 295
           +           D  +  E+   L    E       +  +   + + +  +     L+  
Sbjct: 445 EEDLQGMKVWDLDRSISREEALELWAGMEPGDRRRLEGTYRRKDGSAFPVEVDIRRLRLE 504

Query: 296 SKESFEYL--SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG----NLFYANPSFL 349
            K  F  +     +            +      +  P P            +  ANP+F 
Sbjct: 505 GKGQFMAISRDITDRKVAERKLQRERDRLETLFESLPSPVVRCRAEGGRATVEEANPAFA 564

Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
                   +       L+ LL      D  A     + R           +  +      
Sbjct: 565 ETFPIGQEEAEGQ--DLNDLLVPAGQKDAAAE----IDRRAVEEGPVEHEVRRVA-AGGE 617

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469
                                  I  +  D +  +R+++       ++ +   D + I++
Sbjct: 618 VRDFQLQ-VAGRQPEEGPPEIYAIYTDITDRKRRERRLQRAE----ALFQNAQDALFIVD 672

Query: 470 --------------REGI----------------ILSTNRAVSKLFGYPVEDILRKPFTV 499
                         R+G                 +   N A     G   ED+  K    
Sbjct: 673 VESGGASDGGASGSRDGAAREQGGAPGEGGLSFSVRRVNPAFEGKTGLESEDLRGKDPKE 732

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH 559
                  + +     E +  +      +      +     +    +     +     T  
Sbjct: 733 VFGAEVGAEIEEKYRECIRREEPMEYGEEVPIGGETTYWTTRIAPVAAGGETQMIIGTAR 792

Query: 560 DISEWKQEKNKLSHAKKIAEKESSH 584
           +++E ++ +  L   K + E+    
Sbjct: 793 NVTEDRRREETLRRQKSLLEQTQKL 817


>gi|322420323|ref|YP_004199546.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M18]
 gi|320126710|gb|ADW14270.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M18]
          Length = 1126

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 99/739 (13%), Positives = 221/739 (29%), Gaps = 92/739 (12%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + +   G + E++      +G    +   M + D+           + D LK + +   
Sbjct: 319 VYWVSRDGGICEVNGAASGMLGYSEEEFQAMTISDLRLGCGTVQWREMWDALKEKGSLQF 378

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +      +G    VP+++ A   +S            IV             +      +
Sbjct: 379 EAVHLARDGR--KVPVEITA-NYFSYAGN---EYDCAIVRDITERKRMEEALEHRLAVLT 432

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
                                             +  L E  A +D   +      + ++
Sbjct: 433 EPMVHVCEIRM---------------------EDLFDLEELQAIQDSFAEATGVASIITD 471

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
               P     +   L Q   ++    L N           R+   L      G  + P  
Sbjct: 472 ADGKPVTRPSNFCELCQDIIRKSELGLAN---------CMRSDACLGNVDPSGPRVQPCL 522

Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
                        G     N     L        +E    L  ++      +  A +   
Sbjct: 523 SGGLWDGGASIHVGGHHVGN----WLVG----QVLEEECDLERMM--AYADEIGADRAEY 572

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
                       ++   +                      +         +       K+
Sbjct: 573 RRALAGVTRMPRSQFQRV-------------CGALFQIAGQLSRMAMQNVQQAQHISEKK 619

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           + E ++++   ++E + D I +++ +      N A  +      E ++ +       +  
Sbjct: 620 RSEEQLLEYLKVIECSRDLICVMDSDYRYRMANGAFLRYRDLAQEQVVGRTVAEVHGEEF 679

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-CYSLTMHDISEW 564
            +    ++   L+       E       +  + +++     +           + D +E 
Sbjct: 680 FAGTRQHIDACLA-GQSVRFEMEQAFPERGVRSVTVTYTPVQDQGGHTRIVCVISDQTEK 738

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           K  + +L  ++K+              ++H+    LT I+G+  +++      L   +  
Sbjct: 739 KHLEEQLRQSQKM-----EAVGHLAGGIAHDFNNILTVIVGYGNLLELDGSLTL---QQR 790

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           E    +  +      +   LL  S+    K  ++   + L+  V +    + L    + +
Sbjct: 791 EQVGQVISAAERGSQLTRGLLAFSR----KQVMNPRVLDLNALVGQVQKFL-LRIIGEDV 845

Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS----------- 733
            ++        ++ AD   V+Q+ +N+ +N+    P GG + I T               
Sbjct: 846 ELQFHPVPEQMKVFADGSQVEQVLMNLATNSRDAMPDGGVLSIETCWQEIDEAYARSQGY 905

Query: 734 ---NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
                   L V DTG+GM     E+  +PF     S ++ G+GTGLG+ +   +V  + G
Sbjct: 906 GNPGRYACLMVSDTGIGMDRGTRERIFEPFF----STKVVGKGTGLGMSIVYGIVKQHKG 961

Query: 791 KFYIFSTPAKGTLIEIIFP 809
              ++S P +GT  +I  P
Sbjct: 962 FINVYSEPGEGTTFKIYLP 980



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/201 (11%), Positives = 57/201 (28%), Gaps = 11/201 (5%)

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
              +        L         +L +                        +     +RK 
Sbjct: 236 WRAQEGSPYHKALARWSHGGAAALHVLPSWLAPTLAGLVAFLALAAVFIVLLRLQVQRKT 295

Query: 448 EIEVMQLCSI------LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
              +  L ++      ++   D +  ++R+G I   N A S + GY  E+      +   
Sbjct: 296 LEAMHHLEALNLKKFAMDNMKDAVYWVSRDGGICEVNGAASGMLGYSEEEFQAMTISDLR 355

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY--SLTMH 559
                         +       +L+   +   ++ + + + I      ++        + 
Sbjct: 356 LGCGTVQWREMWDALKEKG---SLQFEAVHLARDGRKVPVEITANYFSYAGNEYDCAIVR 412

Query: 560 DISEWKQEKNKLSHAKKIAEK 580
           DI+E K+ +  L H   +  +
Sbjct: 413 DITERKRMEEALEHRLAVLTE 433


>gi|256842305|ref|ZP_05547809.1| phosphate regulon sensor kinase PhoR [Parabacteroides sp. D13]
 gi|256736189|gb|EEU49519.1| phosphate regulon sensor kinase PhoR [Parabacteroides sp. D13]
          Length = 571

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 83/392 (21%), Positives = 180/392 (45%), Gaps = 30/392 (7%)

Query: 424 FPENMPQNGIEPEDVD-TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
                  N +     +  +     +      + +I+ + ++ I  ++R+  IL  N    
Sbjct: 201 EGVAKSFNRMAERLTEYRKSTLADIIQGKKYIEAIVNSITEPIIGLDRDRKILFANNEAL 260

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
            +     E+++ K  +    +N   ++   + E++    ++  E + + +  +E    ++
Sbjct: 261 TILNLKRENVIGKSASELSLRND--LLRRLVRELIQPGEKK--EPLKIYADNKESYFQVQ 316

Query: 543 IIIKKLPFSS------CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
            I  ++  +          + + +I+E+K              +  S K+ F++ +SHE+
Sbjct: 317 YIPIRVLENGEAEVYVGDVILLKNITEFK--------------ELDSAKTTFISTISHEL 362

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           +TP++AI+   +++++ R G + N      A  I  S N +L+I ++LL ++++E+GK+ 
Sbjct: 363 KTPISAIMMSLKLLEDARVGAM-NDEQKALAESIKESSNRLLEITSELLKMTQVEAGKLQ 421

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716
           L+ +     E +  AI   Q+ A+     I   +   I ++  D   +  +  N+LSNAI
Sbjct: 422 LNPKITKPIELIEYAIKANQVQADRFNCHIEVEYPEKISKLFVDSEKIAWVLTNLLSNAI 481

Query: 717 HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
           H+TP  G+III      +  V + V+D G G+     +     + ++P +   + +G+GL
Sbjct: 482 HYTPENGRIIIGARQQDH-SVEIYVQDFGKGIDPRYHQSIFDRYFRVPGT---KVQGSGL 537

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           GL ++K  V+A+ G   + S   KG+   I F
Sbjct: 538 GLAISKDFVEAHGGTLSVDSAVGKGSTFVIKF 569


>gi|116330886|ref|YP_800604.1| sensor histidine kinase and response regulator of a two component
           complex [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
 gi|116124575|gb|ABJ75846.1| Sensor histidine kinase and response regulator of a two component
           complex [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
          Length = 1231

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 79/261 (30%), Positives = 148/261 (56%), Gaps = 7/261 (2%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E +  KN +    +  E    +KS+FLA +SHE+RTPL +++  S+ + + +   L +  
Sbjct: 548 ELELAKNDIEQKTEQLELSGKYKSEFLANMSHELRTPLNSLLILSKDLADNKKKNL-DED 606

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
            +E AN I +SG+ +L ++N++LD+SKIESGKM+++ E V L   V + IS  +L A +K
Sbjct: 607 QVESANIIYKSGHDLLVLINEVLDLSKIESGKMSVNLERVVLRTFVKDLISGFKLQATKK 666

Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
           ++ +   +  ++P  I  D + + QI  N++SNA+ FT  G +I +     ++++++  V
Sbjct: 667 KLDLDLIYYEDLPEKIRTDPQRLDQILKNLISNALKFTERG-RIQLEVKRQNSDKILFSV 725

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            D+G+G+   +     + F Q+  S   +  GTGLGL +++ +     G+ ++ S   KG
Sbjct: 726 IDSGIGIPEEKYSAIFEAFQQVDGSTSRKYGGTGLGLSISRELAGLLGGEIHLKSKVNKG 785

Query: 802 TLIEIIFPLY----DTSHPHD 818
           +   ++ P+     +TS P +
Sbjct: 786 STFSLLLPIEGKRNETSIPKE 806


>gi|119946606|ref|YP_944286.1| fused histidine kinase sensor/response regulator [Psychromonas
           ingrahamii 37]
 gi|119865210|gb|ABM04687.1| fused histidine kinase sensor and response regulator containing
           ATPase domain [Psychromonas ingrahamii 37]
          Length = 1121

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 73/247 (29%), Positives = 134/247 (54%), Gaps = 6/247 (2%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
             +Q  + L  AK++AE  +  KS +LA +SHE+RTPL  ++G+++++      P    +
Sbjct: 649 AHEQTSSALQVAKEVAEAANEAKSRYLAGLSHELRTPLNVLLGYAQLLSRDPALPF---K 705

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             E    + R+G  + D++  LL+ISKIE+G++NL  +  +L   + + + + Q+ A++K
Sbjct: 706 QREIIGIVKRNGEHLADLIEGLLEISKIEAGRVNLQRDEFNLKAILQQLVDMFQMQASKK 765

Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
           R+      + N+P  +  D + ++QI +N++SNAI +T  G  +    T+  +E     V
Sbjct: 766 RLKFYYLASPNLPDYVATDKQRLRQILINLISNAIKYTEQGS-VTFKVTYR-SEVAHFSV 823

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            DTG G++    E   KPF QI N       GTGLGL +++++ +   G+  + S+  +G
Sbjct: 824 IDTGPGISKSNQELIFKPFEQIRNDHTKAISGTGLGLTISRSLAELMGGEISLTSSIGQG 883

Query: 802 TLIEIIF 808
           +      
Sbjct: 884 STFNFRL 890


>gi|73538298|ref|YP_298665.1| PAS/PAC sensor hybrid histidine kinase [Ralstonia eutropha JMP134]
 gi|72121635|gb|AAZ63821.1| PAS/PAC sensor hybrid histidine kinase [Ralstonia eutropha JMP134]
          Length = 678

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 101/516 (19%), Positives = 190/516 (36%), Gaps = 28/516 (5%)

Query: 318 GENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
             ++    +D  P P       G     N +       +    +      + +   P   
Sbjct: 36  QRDVLAAIIDAAPYPMVARDARGRFVAVNVALEDFLDIRRQTMLGKTMEDAGV---PPNI 92

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
                 P+   R+    +  + R   ++        + F                    +
Sbjct: 93  VAAVASPIARARASGQRVDETLR---VRDAAGEWHDLLFATQPLRLPDGTEAGTVSATID 149

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE--GI--ILSTNRAVSKLFGYPVEDI 492
                  ++        L  I +A       +  E  G       +    +  G+  E +
Sbjct: 150 ITAQLAAEQAALEAKRVLDEIADALPVASFQLCAEPGGRYWFSYFSAKAERYRGWSAERL 209

Query: 493 LRKPFTVF--LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI-IIKKLP 549
           L      +  +       M   L +  +       E   L    E + L L +    + P
Sbjct: 210 LAVVDGEYPSIHPEDRLKMADALHQSAAAQSAAQFELRILV-DGETRWLRLFVGAPARDP 268

Query: 550 FSS-CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                +S    D ++  ++   L+ A+  AE  +  K+ FLA ++HEIRTPL A+IG  E
Sbjct: 269 SGQLRWSGYAGDATDEHRQLEALAAARAAAEGAAQAKARFLATMTHEIRTPLAAVIGALE 328

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
           +++    G   + +        D +  L+++I++ +LD S++E+G++ L   P+ L   V
Sbjct: 329 LLR----GSPMSAQQASEVALADNAARLLMEILDGILDYSRLEAGQLALESLPLDLRALV 384

Query: 669 SEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIII 727
              + + +     K++         +   +L D   +K+I LN++ NA+ FT  GG I +
Sbjct: 385 ESVMQVHRPAVAAKQLAFAFEADARVAVALLGDPTRLKEILLNLIGNAVKFTAQGG-ITV 443

Query: 728 STTH----TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
                     ++ V L V DTGVG+   + E+   PF Q  +S   R  G+GLGL + + 
Sbjct: 444 RLDLLEDMEEHQRVSLSVADTGVGIDARQQEQLFAPFSQADSSISRRFGGSGLGLAICRR 503

Query: 784 MVDANMGKFYIFSTPAKGTLIE--IIFPLYDTSHPH 817
           + +   G   + S P  GT I   +  P+  +  P 
Sbjct: 504 LAERMGGTLTLQSQPGAGTTIVLCVTLPVAMSPVPQ 539



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/250 (9%), Positives = 55/250 (22%), Gaps = 16/250 (6%)

Query: 79  IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDL 136
                      DA G    ++  L   +      M+G  + D     +I       I   
Sbjct: 45  DAAPYPMVAR-DARGRFVAVNVALEDFLDIRRQTMLGKTMEDAGVPPNIVAAVASPIARA 103

Query: 137 LKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRAL 196
                    +T     +    +  +  A  P+   +   +G     I             
Sbjct: 104 RASGQRV-DETLRVR-DAAGEWHDLLFATQPLRLPDGTEAGTVSATI--DITAQLAAEQA 159

Query: 197 GKRLDKKFSHLHEIKK--GHSSVEKEKYDIFSQQSPPPHLRMKN-------KVSSLTEYY 247
                +    + +           +     +         R +         V       
Sbjct: 160 ALEAKRVLDEIADALPVASFQLCAEPGGRYWFSYFSAKAERYRGWSAERLLAVVDGEYPS 219

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
            H +D LK       ++   S  + E    ++      + + G    +      +  +  
Sbjct: 220 IHPEDRLKMADALHQSAAAQSAAQFELRILVDGETRWLRLFVGAPARDPSGQLRWSGYAG 279

Query: 308 HPSLSAYFDE 317
             +      E
Sbjct: 280 DATDEHRQLE 289


>gi|261213592|ref|ZP_05927873.1| integral membrane sensor signal transduction histidine kinase
           [Brucella abortus bv. 3 str. Tulya]
 gi|260915199|gb|EEX82060.1| integral membrane sensor signal transduction histidine kinase
           [Brucella abortus bv. 3 str. Tulya]
          Length = 532

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 91/349 (26%), Positives = 167/349 (47%), Gaps = 4/349 (1%)

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
             ++ EGI+ S +   +KL G   + +        +           L ++ +    + +
Sbjct: 134 FGLDIEGIVSSVDGETAKLLGVQPKMLEGTALIDRVHVADRVQYLSLLADLRAGMATRKV 193

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
           +            +      +        +L    +   ++  ++++  K   E E   K
Sbjct: 194 DVRLRSIE-NGNPVFRAYRFEGAGSDRAITLIGRSLEGEQKLLDEIAMLKAELESERIGK 252

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
              LA VSHE+RTPL +IIGFS+++ ++    L + R  EYA  I +SG+ +L++VN +L
Sbjct: 253 GRLLATVSHELRTPLNSIIGFSDMLTHEIGSKLASDRQREYAGLIHQSGHYLLELVNAVL 312

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
           D S++E+G  ++  +     +AV    +++   A +K +       N +  ++AD R+V+
Sbjct: 313 DNSRLETGTYSIAPQSFVFRDAVEMCTAVMLPQAEKKGVAFCHRVGNGVGELVADRRAVQ 372

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNE---EVILRVRDTGVGMTNYELEKAMKPFGQ 762
           QI LN+ +NA+ FT SGG + I       +    +   V DTG+G+   +L++   PF +
Sbjct: 373 QILLNLATNAVKFTQSGGCVTIDAARVMADGCPMLEFSVSDTGIGIEPEDLQRIGTPFVR 432

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
             NS     EG+GLGL + K +V+ + G   + S P +GT++ I  PL 
Sbjct: 433 AGNSYTQAQEGSGLGLSVVKGLVERHQGSMQLKSRPGEGTVVMIRLPLA 481


>gi|332702333|ref|ZP_08422421.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332552482|gb|EGJ49526.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 539

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 90/517 (17%), Positives = 180/517 (34%), Gaps = 59/517 (11%)

Query: 319 ENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDD-IEIAGGLSTLLDAPKLS 376
           E +     +  P    V   +  L   N +F    + K  D   +   G         + 
Sbjct: 28  EEMYRNIFEGVPCLVAVLDRNFRLVSWNRTFSEHMEVKPGDCCYQAFWGRDCKCVRCPVE 87

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           +  A                        +   +            +   E +    +  +
Sbjct: 88  ETFADGRFHTSEETGA------------YKDGSLAHWIVTTAPVTDASGEIVGAIKMCLD 135

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILRK 495
               +  + K++    +  +I       I +++ E   I+  N   +  +G+  ++++  
Sbjct: 136 ITSRKALEEKLKRSEEKYHAIFSDFPYSIFLLDTESLAIIDCNARTTASYGFSHDELVGT 195

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555
            F           +   L       LR           K  +   + I   +  +     
Sbjct: 196 CFLDLFRDGDKQAIAADL-------LRSGHIHQARHGRKNGQAFYVAIRASRCEYPGRKV 248

Query: 556 LTMH--DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
           L +   DI++  + + +L  A K+A        +    ++HE+  PLT I    ++I  +
Sbjct: 249 LLVTTSDITKRLETEQQLIQASKMAT-----LGEMATGMAHELNQPLTVIQSGVDLILRK 303

Query: 614 --RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
             +   L +      A  +    +   +I+N + +  +    K +L  EPV   E +  A
Sbjct: 304 LSQGQALDSETLRNVAELMAEHVDRAANIINHMREFGR----KSDLRREPVQAGEVLRRA 359

Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN----------------- 714
             + +     + I +R    + +P ILAD   ++Q+ +NIL N                 
Sbjct: 360 FDIFREQFALRGIEVRFELDDGLPDILADRNRLEQVFINILINARDALEAECAGGPDASD 419

Query: 715 --AIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
             A+   P+  ++++ T    ++ V++R+RDTGVG+     EK  +PF          G+
Sbjct: 420 SWAVEAGPADKRLML-TATAQDDWVLIRIRDTGVGVPPALREKIFEPFFTTK----EVGK 474

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GTGLGL +   +V  + G   +  T   GT   + FP
Sbjct: 475 GTGLGLSITYGIVKDHGGNVEVEPTAGPGTCFLLRFP 511



 Score = 38.5 bits (88), Expect = 4.6,   Method: Composition-based stats.
 Identities = 32/381 (8%), Positives = 87/381 (22%), Gaps = 34/381 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D +  L   +    + +                          + +          + T
Sbjct: 45  LDRNFRLVSWNRTFSEHMEVKPGDCC---YQAFWGRDCKCVRCPVEETFADGRFHTSEET 101

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +G+  +  +  A  P+   + E  G     +              KR ++K+  + 
Sbjct: 102 GAYKDGSLAHWIVTTA--PVTDASGEIVGA--IKMCLDITSRKALEEKLKRSEEKYHAIF 157

Query: 209 EIKKGHSSVEKEKYDIF---SQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
                   +   +       + ++   +    +++         +D   +     LL S 
Sbjct: 158 SDFPYSIFLLDTESLAIIDCNARTTASYGFSHDELVGTCFLDLFRDGDKQAIAADLLRSG 217

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP-- 323
                          N           +         L   +  +     ++        
Sbjct: 218 H-----IHQARHGRKNGQAFYVAIRASRCEYPGRKVLLVTTSDITKRLETEQQLIQASKM 272

Query: 324 ETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
            T+ +         +  L        L+ +  S      A    TL +  +L   +  + 
Sbjct: 273 ATLGEMATGMAHELNQPLTVIQSGVDLILRKLSQ---GQALDSETLRNVAELMAEHVDRA 329

Query: 384 VML--------YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
             +         +SD       A     +              E   +  + +P    + 
Sbjct: 330 ANIINHMREFGRKSDLRREPVQAGEVLRRAFDIFREQFALRGIEVRFELDDGLPDILADR 389

Query: 436 EDVDTRI------NKRKMEIE 450
             ++          +  +E E
Sbjct: 390 NRLEQVFINILINARDALEAE 410


>gi|296158186|ref|ZP_06841018.1| multi-sensor signal transduction histidine kinase [Burkholderia sp.
           Ch1-1]
 gi|295891522|gb|EFG71308.1| multi-sensor signal transduction histidine kinase [Burkholderia sp.
           Ch1-1]
          Length = 437

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 78/409 (19%), Positives = 165/409 (40%), Gaps = 35/409 (8%)

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK-----RKMEIEVMQLCSILEATSDGI 465
                +      + P      G     +     +     R++E +  +    ++A+ +G+
Sbjct: 52  RLWRLLDAPVYGEVPSAPGIWGEIYYRLHKLAKRWHAQVRQVEQQHSRFIQAIQASPNGV 111

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
           A+++    I   N      FG   +  LR+  T  + Q        ++  + S    + L
Sbjct: 112 AMLDDHDQIEWCNAISELHFGLDAKRDLRQHITHLVRQP------DFVRYLNSHRYEEML 165

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
               +    +++   L + +      +   +   DI+E ++                + +
Sbjct: 166 ---IMRGMGDKRQNVLSVQVFPY-GENRKLVLSQDITELERT--------------DAMR 207

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
            DF+A VSHE++TPLT + GF E ++     PL       Y   +++  + +  IVNDLL
Sbjct: 208 RDFVANVSHELKTPLTVLSGFLETMRE---LPLSEGERSRYLELMEQQASRMRHIVNDLL 264

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
            ++K+E        + + +   +       Q  +++    I       +  +      + 
Sbjct: 265 VLAKLEGDNKPPSDQMIDMRAVLRHLRDDAQSLSSDHH-KIVFDVDEGL-TVTGVETEIL 322

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
               N+++NAI +TP GG I +S  H      +  V D+G+G+   ++ +  + F ++  
Sbjct: 323 SAFGNLVTNAIRYTPDGGAIRVSW-HAQGGNAVFSVTDSGLGIPTADIPRLTERFYRVDR 381

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           S+     GTGLGL + K ++  +  +  + S   +G+   + FP+Y T+
Sbjct: 382 SRSRDTGGTGLGLAIVKHVLQRHDAQLDVKSEEGRGSTFTVRFPVYRTA 430


>gi|189467251|ref|ZP_03016036.1| hypothetical protein BACINT_03637 [Bacteroides intestinalis DSM
           17393]
 gi|189435515|gb|EDV04500.1| hypothetical protein BACINT_03637 [Bacteroides intestinalis DSM
           17393]
          Length = 536

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 100/518 (19%), Positives = 188/518 (36%), Gaps = 39/518 (7%)

Query: 311 LSAYFDEGENLTPETVDKCPIPFF---VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
                 E   L  E ++  PIP     +  + N  + N     L      D I       
Sbjct: 35  EWEEMKEDNFLMRELLNNLPIPTTVKDIKDNCNYLFWNKKSEDLYSVSQDDLIGKNAS-- 92

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
                P    +   +                  H I  +    +   +         P  
Sbjct: 93  ---VLPPEICSAFQQTDRETIRSGQSNTFQ---HLILADGCEHVLSMYKQLLYYKGEPRW 146

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST---NRAVSKL 484
           +       +  +    + ++E   +Q   +L+AT   +   +     ++    N      
Sbjct: 147 L--ISAAVDVTEATEKRCQLEQLDLQHRLLLKATGMKLWTWDLRRKEITWKRDNEGA--- 201

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE--KLLSLR 542
                  +      + +       +   L  +   +     ++      ++       + 
Sbjct: 202 ---TDRVVDADEHLLLILPEYRENIYRALDRLNRKETD-FFDEEFQLRNEDGTLSWREIY 257

Query: 543 IIIKKLPFSSCYSLTM---HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
             + +   +    + +     I + K  +  L  AK+ AE+ +  KS FLA +SHEIRTP
Sbjct: 258 GAVYQYDENGEPVVLVGGTLMIDKRKALEQDLREAKEKAEEANRLKSAFLANMSHEIRTP 317

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L +I+GFS ++              EY   I  +  L+L +V+D+L++SK+E+G   L+ 
Sbjct: 318 LNSIVGFSSIL----TMTEDMEEKKEYNQLIQHNNTLLLKVVDDVLELSKLEAGDFKLYP 373

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719
               L + V E+ +  ++ A+ K + +R         +  D + VK+I  N LSNA+  T
Sbjct: 374 AWFCLSDLVVESAAECRMKADGK-LDVRVDKPEQDYMVELDAQYVKRILSNFLSNALKNT 432

Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
            SG  I I+ +      V + V+DTG G+   +L      F ++ +      +G GLGLP
Sbjct: 433 QSG-HIDIAYSMVDGG-VKISVKDTGCGIPQDKLPVVFDRFEKVDSF----AQGVGLGLP 486

Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
           + K++ ++  G   + S    GT   +  P      P 
Sbjct: 487 ICKSIAESMGGTIGVTSEVGAGTAFWVTLPCATAPTPQ 524


>gi|33591408|ref|NP_879052.1| phosphate regulon sensor protein [Bordetella pertussis Tohama I]
 gi|33571050|emb|CAE40538.1| phosphate regulon sensor protein [Bordetella pertussis Tohama I]
 gi|332380809|gb|AEE65656.1| phosphate regulon sensor protein [Bordetella pertussis CS]
          Length = 436

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 85/455 (18%), Positives = 167/455 (36%), Gaps = 32/455 (7%)

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
            L TL      +    +   ++       +  +A    + W       ++    +  +  
Sbjct: 3   WLRTLFMIAFWAVMALLAQWLIGDPAGWLLFGAATAAMLLWRSWRLHLVSRWAHDPESAP 62

Query: 425 PENMPQNGIEPEDVDT--RINKRKMEIEVMQLCSIL---EATSDGIAIINREGIILSTNR 479
           P  +         +    R   R++      + S+L   +A  DG+  +N +  I   NR
Sbjct: 63  PAAVGPWDDILAPLYRYTRARARELAETRETMQSMLAAAQALPDGVVTLNEDFQIDWANR 122

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
              +  G  +           L          ++         + +      + +E    
Sbjct: 123 MARRHLGLRLPADRGHNLLNLLRAP------EFVAYAHRGHWPEPILVRLSLNGQER--- 173

Query: 540 SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
            + +I      S+   L   D+++ ++ +                + DF+A VSHE+RTP
Sbjct: 174 -VMMIHLAGYASNQRLLISRDVTQIERLETT--------------RRDFVANVSHELRTP 218

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           LT + GF E ++      L   +  +Y   +      +  IV DLL +S +ES       
Sbjct: 219 LTVLAGFLETLRELPAEALPAEQRDQYMAMMHEQARRMQAIVEDLLTLSTLESS-PEADP 277

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719
             V +   +  A   V+  +N + +         +  +L     +     N+L+NA+ +T
Sbjct: 278 LAVDVGALLRTARQQVEALSNGRHV-FEWQIEEGL-DVLGSGTELASALSNLLTNAVRYT 335

Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
           P GG+II+     ++ E +  V+DTG+G+    L +  + F ++   +     GTGLGL 
Sbjct: 336 PDGGRIIVRWRRGADGEALYSVQDTGIGIPARHLPRLTERFYRVDRGRSRAAGGTGLGLA 395

Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           + K +   +     I S   KG+   + FP    +
Sbjct: 396 ITKHIAMRHDADLLIDSELGKGSTFTLRFPAERVT 430


>gi|327538858|gb|EGF25501.1| sensory box histidine kinase [Rhodopirellula baltica WH47]
          Length = 417

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 91/407 (22%), Positives = 176/407 (43%), Gaps = 23/407 (5%)

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK-MEIEVMQLCSILEATSDGIAII 468
            L + F  +  + Q            E++     + + +  E  Q  S L   SDG+ ++
Sbjct: 26  GLLLVFRHWHSSQQDDAVAAYVRDSTEEIQKWQERLRCLHAETRQNASALLQLSDGVIVL 85

Query: 469 NREGIILSTNRAVSKLFGYP-VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
            ++  +L  N +  +L G    + +L + FT  +       +   +   +     Q    
Sbjct: 86  AKDFSVLLINPSAVRLLGLKKRDALLGRCFTELVR---VPQLLASIRSAVREQQPQEFTV 142

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
                    + L +R+ +          L++ D +E ++ +                + +
Sbjct: 143 EVHDQ-GVMRPLRVRVDLIDTGEEPNLQLSLRDETEARRVEE--------------MRRE 187

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           F+A VSHE++TPL AI G++E +  +          + +   I      +  +V++++ +
Sbjct: 188 FIANVSHELKTPLAAIKGYAETV--ELAVQDDPDAALHFMQQIMSQCLRLERLVHEMMQL 245

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707
           ++ ++G  NLH   VSL E VS+AI   +  A    + +     +   +I+AD  +   I
Sbjct: 246 ARAQAGPANLHLSSVSLSEIVSDAIRTYEPVAAANGLDLIQEVPSGEAKIIADREATLTI 305

Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
           A N++ NA+ +TPSGG+I +S      ++  L V DTGVG+   E ++  + F +   ++
Sbjct: 306 ANNLIGNALRYTPSGGEIRVSI-VEQTDQWALVVEDTGVGIPYSEQQRIFERFYRGSRNE 364

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           +    GTGLGL + K +  A  G   + STP +G+   +  P    S
Sbjct: 365 ESSTSGTGLGLAIVKHLTQAQQGDVSVTSTPGEGSRFCVCLPAVQAS 411


>gi|312960762|ref|ZP_07775267.1| hypothetical protein PFWH6_2670 [Pseudomonas fluorescens WH6]
 gi|311284420|gb|EFQ62996.1| hypothetical protein PFWH6_2670 [Pseudomonas fluorescens WH6]
          Length = 1234

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 122/657 (18%), Positives = 229/657 (34%), Gaps = 28/657 (4%)

Query: 168 IYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ 227
            +SR RE +     GI    +  +   A  +         H +      V +    I + 
Sbjct: 133 HHSRMREATTLIEQGIADGLKDLDTRAAEHQARVSNIESAHRML----DVLRNGERITTA 188

Query: 228 QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287
                 L      ++           +  +   ++ + ++     +    I       + 
Sbjct: 189 NVARMLLSGDGTAATAARNACAALQPVVEQLREVMGTADAKENLDQLAAAITAAGLAVEH 248

Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPS 347
                +    E+   L+     +       G+       D   I             N +
Sbjct: 249 LGEAPKLRGGEALRQLAAVGDVAERLEAQLGDVDGQVAHDASDI-----QAATGLLHNAA 303

Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA---IKPVMLYRSDRTCIAASARLHTIQ 404
            L     + V  +E       L  + +++D       +   + R   + +   A    + 
Sbjct: 304 ALSKRFAERVATLEAQTLSFRLSPSAEIADAVGTLLDELSRVARVLPSSVGTQANATPVT 363

Query: 405 WNRE--NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL----CSIL 458
              +     A      + +N   +   Q   E       + +   +     L      +L
Sbjct: 364 VKDQIAGYRAAFARFRQASNALSDARDQVRNEARSAGLLVARFAGQARSDALVHNDRGML 423

Query: 459 EATSDGIAIINREGIILSTNRAVSKL----FGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
                G   I   G I  +               +  +        +           +T
Sbjct: 424 ATIIAGTVAILLAGAIAWSTSRFVAQPIVALASVMRRLAAGDLRTGIASVERGDEIGIMT 483

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN-KLSH 573
             + +     L    L +  E +   ++  ++++      ++T+H  +E  + +  +L  
Sbjct: 484 RAVRVFQENALRIRVLEAEAEAERQQVQASLERMVAER--TVTLHHQTEVLEAQAIELIQ 541

Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
           A+  A+  +  KSDF+A VSHE+RTPLT I+   E +      P     +        R+
Sbjct: 542 ARNQADSANQAKSDFVATVSHELRTPLTLILAPLEQLSAATLVPAD---WRVQIERAQRN 598

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693
              +++ VND+LD SK E+GK  +    V L+ AV        + A  K   +  S    
Sbjct: 599 ALRLMNRVNDILDFSKAEAGKFEVCPTLVDLNNAVGVLAEDAAMVAEGKGCTLTCSIDPA 658

Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753
           +  +  D R  ++I LN++SNAI FTP+GG + ++ T    E   L V+D+G+G+   EL
Sbjct: 659 LGTVFLDPRHFEKILLNLVSNAIKFTPAGGTVHLAVTPLDGERFELAVQDSGIGIAPEEL 718

Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
               + F QI NS      GTG+GL L K +V+   G+  + S P +G+   +  PL
Sbjct: 719 PLLFQRFSQIDNSATRHYSGTGIGLALVKDLVELMGGEVGVSSEPGRGSCFFVRLPL 775



 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 76/223 (34%), Gaps = 29/223 (13%)

Query: 606  FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK-------IESGKMNLH 658
             S+ + N   G +     ++ A  +         IV +L  ++K       I + + +  
Sbjct: 1017 LSDFLANDPKGKMLPDYLLKLAEVVTAE---QQGIVEELGQLTKGIDHIKTIVAAQQSYA 1073

Query: 659  F-----EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713
                  E VS+   V +A+ +       + + +    A ++P +  D   V  I +N++S
Sbjct: 1074 VAVSVVETVSVAGLVDDALRMSAGSLERQGVTLVKRIA-DLPLLPLDRHRVLLILVNLIS 1132

Query: 714  NAIHFTPSG-----GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
            NA      G       + +         + + V D G G+T   L +             
Sbjct: 1133 NA-KHALEGVADRSPCVTLDACLVDASVLRISVTDNGNGITPEHLARIF-----SHGFTT 1186

Query: 769  IRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFPL 810
             + EG G GL           G+  + S    +G    +  PL
Sbjct: 1187 RK-EGHGFGLHSCALAAQEMGGRLTVHSDGAGQGATFTLDIPL 1228


>gi|239831952|ref|ZP_04680281.1| PAS domain S-box-containing protein [Ochrobactrum intermedium LMG
           3301]
 gi|239824219|gb|EEQ95787.1| PAS domain S-box-containing protein [Ochrobactrum intermedium LMG
           3301]
          Length = 858

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 98/629 (15%), Positives = 206/629 (32%), Gaps = 51/629 (8%)

Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270
            +G      + Y + +  +    +R  + V +     +     L       L+++E    
Sbjct: 104 ARGQIVYANQAYAMMTGVANAEGVRSLDNVLTAEPAASDAIYRLTNAVRDGLSAQEEVRL 163

Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL-------SHRNHPSLSAYFDEGENLTP 323
                     +              + + F+            +  +    F +      
Sbjct: 164 SGGLSREGRGSLAPVWYRIKARPIEAGQEFKSPLVAWQIADISDERAEQERFFQELQEAI 223

Query: 324 ETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
             +D  P  FF     G + Y N +               +  L+ ++    ++      
Sbjct: 224 NHLDHAPAGFFSADPSGRIIYLNATLAEWLGVDLTQFTPGSLTLNDIVAGSGMA------ 277

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
            +   +++      +     +      SLA+ F    +A +         I  +  +   
Sbjct: 278 LIKAVKAEPGTSRNTVIDLDLIKRNGQSLAVRFYHRVQAARDGTRGTSRTIVLDRAEGED 337

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG--YPVEDILRKPFTVF 500
           +   +    ++      +    IA ++  G IL TN     +F      + I        
Sbjct: 338 SSMALRSAEVRFTRFFNSAPMAIAAVDSAGHILRTNARFLDIFAPVVDRDAIDGNAKLEI 397

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL----PFSSCYSL 556
           +         +                 T+    EE+ +   +                +
Sbjct: 398 VVHERDRETFNRALAAAFAGQASISPVDTVLPGNEERHIRFYMSPVTDLGGERAEEAAII 457

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
           +  + +E K  +N+++ ++K+              ++H+    LTAII  S+++      
Sbjct: 458 SAVETTEQKALENQMAQSQKM-----QAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNH-- 510

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
              +P + +  N I ++ N    +V  LL  S+    +  L  E + L + +++ + ++ 
Sbjct: 511 RASDPSFPDIMN-IKQNANRAASLVRQLLAFSR----RQTLRPEVLDLTDVLAD-LRMLL 564

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT------ 730
                K I ++     ++  + ADL   +Q+A+N+  NA    P GG+I + T       
Sbjct: 565 ARLVGKDIELKIDHGRDLWSVKADLGQFEQVAVNLAVNARDAMPEGGEITLRTRNVPMQE 624

Query: 731 --------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
                       + V+  V DTG G+    LEK  +PF          G+GTGLGL +  
Sbjct: 625 AAKLHYRDLPEADYVVFEVEDTGTGIPADVLEKIFEPFFTTK----EVGKGTGLGLSMVY 680

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
            ++    G  Y  S   KGT  +I  P +
Sbjct: 681 GIIKQTGGFIYCDSEVGKGTTFKIFLPRH 709



 Score = 70.8 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 24/241 (9%), Positives = 70/241 (29%), Gaps = 7/241 (2%)

Query: 318 GENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
            ++L    +D  P    +    G + YAN ++ ++T   + + +      + L   P  S
Sbjct: 84  EQDLAHSFMDSQPEGTVISDARGQIVYANQAYAMMTGVANAEGVRSLD--NVLTAEPAAS 141

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           D        +                 +  R +   + +    +  +  +      +  +
Sbjct: 142 DAIYRLTNAVRDGLSAQEEVRLSGGLSREGRGSLAPVWYRIKARPIEAGQEFKSPLVAWQ 201

Query: 437 DVDTRINKRKMEIEVMQLC-SI--LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
             D    + + E    +L  +I  L+    G    +  G I+  N  +++  G  +    
Sbjct: 202 IADISDERAEQERFFQELQEAINHLDHAPAGFFSADPSGRIIYLNATLAEWLGVDLTQFT 261

Query: 494 RKPFT-VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
               T   +   +   +   +           ++   +    +   +     ++     +
Sbjct: 262 PGSLTLNDIVAGSGMALIKAVKAEPGTSRNTVIDLDLIKRNGQSLAVRFYHRVQAARDGT 321

Query: 553 C 553
            
Sbjct: 322 R 322



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 49/419 (11%), Positives = 109/419 (26%), Gaps = 36/419 (8%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDV--SDILHIDPNNHIGDLLKRQNTWYGKT 147
           DA G +   ++      G    + +   L +V  ++    D    + + ++   +   + 
Sbjct: 103 DARGQIVYANQAYAMMTGVANAEGV-RSLDNVLTAEPAASDAIYRLTNAVRDGLSAQEEV 161

Query: 148 TL-----WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
            L         G+   V   + A PI +     S    + I  ++    +     + L +
Sbjct: 162 RLSGGLSREGRGSLAPVWYRIKARPIEAGQEFKSPLVAWQIADISDERAEQERFFQELQE 221

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR------MKNKVSSLTEYYAHKDDVLKT 256
             +HL     G  S +     I+   +    L           ++           ++K 
Sbjct: 222 AINHLDHAPAGFFSADPSGRIIYLNATLAEWLGVDLTQFTPGSLTLNDIVAGSGMALIKA 281

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN--NSKESFEYLSHRNHPSLSAY 314
            K    TS  + +                       ++          L        S  
Sbjct: 282 VKAEPGTSRNTVIDLDLIKRNGQSLAVRFYHRVQAARDGTRGTSRTIVLDRAEGEDSSMA 341

Query: 315 FDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLT-KYKSVDDIEIAGGLSTLLDA 372
               E       +  P+    V S G++   N  FL +       D I+    L  ++  
Sbjct: 342 LRSAEVRFTRFFNSAPMAIAAVDSAGHILRTNARFLDIFAPVVDRDAIDGNAKLE-IVVH 400

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
            +  +         +    +       L     N E  +     P               
Sbjct: 401 ERDRETFNRALAAAFAGQASISPVDTVL---PGNEERHIRFYMSPVTDLGGERAEEAAII 457

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSI----------LEATSDGIAIINREGIILSTNRAV 481
              E  + +  + +M  +  ++ ++                 I + +    +L TN   
Sbjct: 458 SAVETTEQKALENQM-AQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSD---LLLTNHRA 512



 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 51/152 (33%), Gaps = 11/152 (7%)

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
           E     S +++  +G  I +  G I+  N+A + + G    + +R    V   +   S  
Sbjct: 84  EQDLAHSFMDSQPEGTVISDARGQIVYANQAYAMMTGVANAEGVRSLDNVLTAEPAASDA 143

Query: 510 NHYLTEILSLDLRQTLEKITLG---STKEEKLLSLRIIIKKLPFSSC-------YSLTMH 559
            + LT  +   L    E    G         L  +   IK  P  +         +  + 
Sbjct: 144 IYRLTNAVRDGLSAQEEVRLSGGLSREGRGSLAPVWYRIKARPIEAGQEFKSPLVAWQIA 203

Query: 560 DIS-EWKQEKNKLSHAKKIAEKESSHKSDFLA 590
           DIS E  +++      ++         + F +
Sbjct: 204 DISDERAEQERFFQELQEAINHLDHAPAGFFS 235


>gi|326796891|ref|YP_004314711.1| multi-sensor hybrid histidine kinase [Marinomonas mediterranea
           MMB-1]
 gi|326547655|gb|ADZ92875.1| multi-sensor hybrid histidine kinase [Marinomonas mediterranea
           MMB-1]
          Length = 1061

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 78/247 (31%), Positives = 123/247 (49%), Gaps = 6/247 (2%)

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           Q + KL  AK  AE+ +  KSDFLA +SHEIRTPL  +IG   ++               
Sbjct: 536 QSREKLRLAKAEAEEANRAKSDFLANMSHEIRTPLNGVIGSLTLVLQSASIA---KEQRG 592

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
             +   +S   +L+I+ND+LD+SKIE+G + L  +PVSL E   E   L++  A EK ++
Sbjct: 593 LLDISRQSALTLLEIINDILDLSKIEAGNLILDRKPVSLTELTKETGELLRAKALEKGLV 652

Query: 686 IRT-SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVI-LRVR 742
               S       ++ D   ++QI LN+L NA+ FT  G   + I     + +  + + V 
Sbjct: 653 FNIPSTPLPAIEVIGDPLRIRQILLNLLGNALKFTHEGEVNLAIRARFENEKYWLSMAVS 712

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG+G++  +  +  + F Q  +S      GTGLGL + K +     G+ ++ S    G+
Sbjct: 713 DTGIGLSEEQKRQLFQRFKQADSSTTRLYGGTGLGLSICKEIAALMDGEIHVESELGSGS 772

Query: 803 LIEIIFP 809
                 P
Sbjct: 773 TFTFEAP 779


>gi|311693144|gb|ADP96017.1| extracellular solute-binding protein, family 3 [marine bacterium
           HP15]
          Length = 902

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 112/617 (18%), Positives = 217/617 (35%), Gaps = 59/617 (9%)

Query: 242 SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301
           S  +     D         L  +  +    +      +  Q  +     +    S    E
Sbjct: 195 SPVDVVLRVDTDRDLLYQVLNKAIAAIGHNEHRTIRQSWLQADQPSLERSGLELSGSDME 254

Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSVDDI 360
           +L  + HP L   F         T D  P          L    N  F        +D  
Sbjct: 255 WL--KQHPDLKVAFRADWPPFEYTQDGRPTGLVPDLLTRLETELNVRFTRTVAGSRMDAE 312

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
           E        +           +  +  R+  T   A A     ++  +     T      
Sbjct: 313 EKLRSGEVDILPGLSRTPRTEEAFLFTRAYLTVPIALAIRDDGRFIGDLRELRTERVGVV 372

Query: 421 ANQFPENMPQNGIEPEDV--DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
                 +         D+     + +  + +    L  ++         + R G    +N
Sbjct: 373 NRHAAHDYLLINHPNLDLYPMDTVEEGLLALSNGDLDVMVTHIPAVSYTVARLG---LSN 429

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
               ++          +            V+N  L  + + +      +      ++E  
Sbjct: 430 ---LRITSITPYQYDLRLAVRKDNPELHRVLNKALGSLEASETESIYNRWIHLDIEQETD 486

Query: 539 LSLRIIIKKLPFSSCYSLTM--------HDISEWKQEKNKLSHAK--------------K 576
            ++   +  +  +    L           ++ E  + +N L  ++              +
Sbjct: 487 YTVVRRVVLI--AILVVLIFLYWNRKLSREVDERIRSENALRRSEDELRAAKLEAERLAR 544

Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
            AE  S  KS+FLA +SHEIRTP+ A+IG+S+++ N     + +P+   Y + I      
Sbjct: 545 EAEAASLAKSEFLANMSHEIRTPMNAVIGYSDLLSN----SVTDPQQRNYLDAIRAGSRS 600

Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP- 695
           +L ++ND+LD+S+IE+GKM L +  VS+   + +   +  L A E+ I +  S  + +P 
Sbjct: 601 LLMLINDILDLSRIEAGKMRLDYSAVSVRRLLDDVRHIFDLRAREQGITLEVSVDSRMPG 660

Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIII----------STTHTSNEE--------V 737
            ++ D   ++Q+  N++ NAI FT  GG + +          S     N E        +
Sbjct: 661 AMMLDETRLRQVLFNLVGNAIKFTHDGG-VTVRATAKPLKKRSAEAEQNPEAPERQYYKL 719

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
           I+ V D+G+G+   ++E+    F Q       R  GTGLGL +++ +     G+  + S 
Sbjct: 720 IVTVSDSGIGIPPDQVERIFDAFEQQEGQNTRRYGGTGLGLAISRKLARMMGGELEVESE 779

Query: 798 PAKGTLIEIIFPLYDTS 814
              G++  +  P  + +
Sbjct: 780 QGSGSVFTVTLPRVEAT 796


>gi|322417990|ref|YP_004197213.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M18]
 gi|320124377|gb|ADW11937.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M18]
          Length = 685

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 92/484 (19%), Positives = 168/484 (34%), Gaps = 40/484 (8%)

Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
           LT   +   IE     +       L   +  +  +  +            + +  +R   
Sbjct: 88  LTDTATPLIIEGEHLANIFTGQLFLEPPDRGRFQLQAKRFG----FEEAAYLLAVDRVPI 143

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470
           +    +    A                + +   + ++     ++  I+    +GI + +R
Sbjct: 144 ITQEKLDQNLAFIANLTELLALQGLTQLRSLEVQERLSESEERMQQIIACAREGIIVYDR 203

Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530
                  NR + ++ GY  E +L K           + +   L  +L  +   +LE    
Sbjct: 204 GMRYQIWNRYMEQMSGYRAEQVLGKLPHEAFPMLKQAGVVERLQRVLGGEPVDSLEFEFQ 263

Query: 531 GSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
                 +       ++ L  +         T+ DI+  K+ + +L  A+K+         
Sbjct: 264 FPN-TGRSGWCSDTMEPLKNADGEIVGAIGTIRDITLHKKTEEQLRQAQKM-----ESVG 317

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
                V+H+    LT I+G ++ +   R  P  + R       I  +      I   LL 
Sbjct: 318 RLAGGVAHDFNNMLTVIMGQAQ-LAKMRISP--HHRLWPALEQIWTAAQRSSRITRQLLA 374

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706
            S+ E     +  +PV+L++ ++EA   + L   E+ I +      ++  +  D   + Q
Sbjct: 375 FSRKE----IIDPQPVNLNQLIAEAQKTL-LRLIEESITLACLPGTDLWTVKMDPSQIDQ 429

Query: 707 IALNILSNAIHFTPSGGQIIISTT--------------HTSNEEVILRVRDTGVGMTNYE 752
           + +N+  NA    P GG + I T                   + V LRV DTG+GM    
Sbjct: 430 VLMNLAVNARDAMPDGGVLSIQTENVHLSRKDCQHLRDAVPGDYVQLRVSDTGIGMGQEV 489

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
           LE    PF          G+GTGLGL     +V  N G   ++S    GT  +I  P   
Sbjct: 490 LEHIFDPFYTTK----EIGKGTGLGLATVYGIVRQNGGFIDVYSELRHGTAFKIYLPRVT 545

Query: 813 TSHP 816
              P
Sbjct: 546 DEIP 549



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 27/297 (9%), Positives = 57/297 (19%), Gaps = 16/297 (5%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D     +  +  + +  G  A +++G    +   +L           +            
Sbjct: 202 DRGMRYQIWNRYMEQMSGYRAEQVLGKLPHEAFPMLKQAGVVERLQRVLGGEPVDSLEFE 261

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
           +    T           P+ + + E  G    G +    +        ++  K  S    
Sbjct: 262 FQFPNTGRSGWCSDTMEPLKNADGEIVGA--IGTIRDITLHKKTEEQLRQAQKMESVGRL 319

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
                         I  Q          +                 +     L +     
Sbjct: 320 AGGVAHDFNNMLTVIMGQAQLAKMRISPHHRLWPALEQIWTAAQRSSRITRQLLAFSRKE 379

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV--- 326
                   +N      ++    L   S                      + L    V   
Sbjct: 380 IIDPQPVNLNQLIAEAQKTLLRLIEESITLACLPGTDLWTVKMDPSQIDQVLMNLAVNAR 439

Query: 327 DKCPIP---------FFVYSHG--NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
           D  P             +      +L  A P   +  +            L  + D 
Sbjct: 440 DAMPDGGVLSIQTENVHLSRKDCQHLRDAVPGDYVQLRVSDTGIGMGQEVLEHIFDP 496


>gi|146307491|ref|YP_001187956.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
           mendocina ymp]
 gi|145575692|gb|ABP85224.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
           mendocina ymp]
          Length = 631

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 75/254 (29%), Positives = 128/254 (50%), Gaps = 11/254 (4%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E +Q   +L  A++ +E+ +  KSDFLA +SHE+RTP+  ++G  ++++        N  
Sbjct: 239 EQQQAIAELIQAREESEQANRAKSDFLAMMSHELRTPMNGVLGMLQLLETTSL----NDE 294

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             EYA     S   +L ++ND+LD S+IE G + L   P +L E +  ++ + Q  A ++
Sbjct: 295 QTEYAALATESTEHLLKVINDILDFSRIERGALELEAIPFNLLELLQGSVQVFQHSAQQR 354

Query: 683 RILIRTSFANNI--PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL- 739
            + +       +    +  D   ++QI +N++ NA+ FT  G QI + T     ++ +L 
Sbjct: 355 GLQLLLETQPGLQQLEVRGDPTRIRQILVNLIGNALKFTEEG-QIRVETRWQPLDDQVLW 413

Query: 740 ---RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
               V D+G+G+    LE     F Q   S   R  GTGLGLP+A+ + +   G     S
Sbjct: 414 FTCAVHDSGIGIDAERLEHMFDAFQQADTSISRRYGGTGLGLPIARTLAERMGGTLQAES 473

Query: 797 TPAKGTLIEIIFPL 810
              KG++  +  PL
Sbjct: 474 QLGKGSVFTLEIPL 487


>gi|94265547|ref|ZP_01289294.1| PAS [delta proteobacterium MLMS-1]
 gi|93453947|gb|EAT04297.1| PAS [delta proteobacterium MLMS-1]
          Length = 825

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 98/503 (19%), Positives = 194/503 (38%), Gaps = 49/503 (9%)

Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
           +        +  ++        +L A   + + A+  +   R+  + +     L  +   
Sbjct: 37  ALRQCRSPAAAGELLRRQPPEAILLALPPTTDAALPAIAELRTHSSHLP----LLALSER 92

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM----EIEVMQLCSILEATS 462
            +   A   +     +   +++         +     + ++         +L   L    
Sbjct: 93  DDTEFAFQVLAAGVQDYLVKSLLTASALERAIHLARVRMQLASGLRESRQRLELALAGAD 152

Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKP--FTVFLEQNTPSVMNHYLTEILSLD 520
            G+   +    + + +     + GY     L         +       + + +   L+  
Sbjct: 153 LGLWEWHLATDLFTLDGQWDTILGYHPAQPLTATEIRQQLIHPADLPRLQNAIKRHLAGA 212

Query: 521 LRQTLEKITLGSTKEEKLLSL--RIIIKKLPFSSC---YSLTMHDISEWKQEKNKLSHAK 575
              T+E       +    + +  R  + +          + +  +I++ K  +  L  + 
Sbjct: 213 TP-TMEAEYRWHHRTGHWVWVLDRGRVVEWADDGTPLKMAGSNLNINQRKAAEEVLRRSH 271

Query: 576 KIAEKESSH---------------------KSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
           +     +                       KS+FLA +SHEIRTPL  IIG SE++    
Sbjct: 272 RQLAAANRRQAAASAEASRQAAAAAAANRAKSEFLANMSHEIRTPLNGIIGLSELLA--A 329

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                +P +  YA  I  SG  +L I+ND+LD SKIE+G + L     +L +AV+  + L
Sbjct: 330 APENLDPEHRRYAGLIHDSGQALLTIINDILDFSKIEAGHLELAERQFNLHDAVTTTLEL 389

Query: 675 VQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
            +     + I ++  ++  +P  +L D + ++Q+ LN+LSNA+ FT SG +I++      
Sbjct: 390 AKATTGARDIPLKLEYSPELPGELLGDPQRLRQVLLNLLSNALKFTESG-EIVLRLAAAD 448

Query: 734 NEE--------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
                      +   V+DTG+G+    LE+  + F Q   S      GTGLGL + + +V
Sbjct: 449 QAPATSAPALPISFTVKDTGIGIAAERLEQIFEAFNQADTSSTRHQAGTGLGLAIVRRLV 508

Query: 786 DANMGKFYIFSTPAKGTLIEIIF 808
            A  G   + S P +G+  ++I 
Sbjct: 509 TAMGGTIEVESEPGQGSSFQVII 531


>gi|86160538|ref|YP_467323.1| GAF sensor hybrid histidine kinase [Anaeromyxobacter dehalogenans
            2CP-C]
 gi|85777049|gb|ABC83886.1| GAF sensor hybrid histidine kinase [Anaeromyxobacter dehalogenans
            2CP-C]
          Length = 1853

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 69/249 (27%), Positives = 131/249 (52%), Gaps = 3/249 (1%)

Query: 562  SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
            SE +     L    +  +  S +KS+FLA +SHE+RTPL +++  S+++   R G L   
Sbjct: 1433 SEVELASRSLEEKAEQLQLISRYKSEFLANMSHELRTPLNSLLILSKMLAENRDGNLTVE 1492

Query: 622  RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
              +++A+ +  SG+ +L ++N++LD+SKIE+GKM +      L+    +     +  A  
Sbjct: 1493 -QVKFASTVYTSGHELLGLINEILDLSKIEAGKMPIEPRDTRLESVRDDLEQTFRHVAEH 1551

Query: 682  KRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
            K +  +   A ++P  I  D   ++QI  N++SNA  FT  G ++++  +  +   +   
Sbjct: 1552 KGLGFQVRMAPDLPDRIHTDPTRLQQILKNLISNAFKFTERG-EVVLEVSPAAGGALAFA 1610

Query: 741  VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
            VRDTG+G+   + +   + F Q   +   +  GTGLGL +++ +     G   + S P +
Sbjct: 1611 VRDTGIGIPADKQKLIFEAFQQADGTTSRKYGGTGLGLTISREIARLLGGSIEVESAPGR 1670

Query: 801  GTLIEIIFP 809
            G++  ++ P
Sbjct: 1671 GSVFTLVLP 1679


>gi|83310971|ref|YP_421235.1| PAS/PAC domain-containing protein [Magnetospirillum magneticum AMB-1]
 gi|82945812|dbj|BAE50676.1| PAS/PAC domain [Magnetospirillum magneticum AMB-1]
          Length = 1218

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 102/799 (12%), Positives = 230/799 (28%), Gaps = 96/799 (12%)

Query: 88   NIDAHGY--LKEISEELPKTIGNYAFKMIGMR---LCDVSDILHIDPNNHIGDLLKRQNT 142
             +   G   +   S+   + IG    +M  +    L ++      D    + D + R   
Sbjct: 314  RMSPDGRRRMLYASQGAERLIGITPAEMCRLPSDRLLELRHPD--DRERTLADTIDRLGR 371

Query: 143  WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
                +  W +   +  V    ++  +  R+         G++     + +      R  +
Sbjct: 372  QDEVSLRWRLARPSGTVSWVRSSERLVGRDGA--DLLVEGLLQDCGAEVEVEDELARRVR 429

Query: 203  KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
            +   + +      S   E   +    SP         V        +   ++  E   + 
Sbjct: 430  ELKAVADYAPDWESWLDEDGGL-RWLSPGVEKVTGYTVEECRALAGYPRSLVCDEDLGVF 488

Query: 263  TSEESSLPE-------QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY- 314
             +  ++                              +  +   +   L  R      A  
Sbjct: 489  DTAMAAAGAGSAVADIDIRIRRRWGEASWCSLSIQPVIADGHPAGLRLCIRRIDRRKAAE 548

Query: 315  -----FDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
                  +E        +D       V +  G + YAN +   L  +++   +        
Sbjct: 549  QMLHQREEEIARVLAALDLVREAVIVSNAEGTISYANAAAARLLGFEAAAALRGHPW--R 606

Query: 369  LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
             L     S    +  +    + R   +    L       E ++ +               
Sbjct: 607  TLGLAGSSSAPFLDIIESSLASRGAWSGELVLG----QGEGAIYLDTRFARMPQD----- 657

Query: 429  PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
                +  +    ++   ++     +  ++ E   D I ++   G I+  N     +FG+ 
Sbjct: 658  GFIAVLTDIGARKLADEQLRENQERYRALFETAGDAIFLMEGAG-IIDCNPRAEAVFGHG 716

Query: 489  VEDILRKPFTVFLEQNTPSVMNHYLTE---ILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
              ++       F            +     +             LG  K+  L+ L + +
Sbjct: 717  RGELQGHGLHDFAPPRQTDGRESKVVAAGLLAKALGGHPQAYEWLGRHKDGSLIHLDVTL 776

Query: 546  --KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE--SSHKSDFLARVSHEIRTPLT 601
                          + D++E ++ +++  H ++   +             V+H+    L 
Sbjct: 777  TCVPRRGRPYLVAVVRDVTERRRREDEQRHLEQQLAQARKLEALGQLAGGVAHDFNNILG 836

Query: 602  AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
            AI GF++++ ++        R   Y   I  + +    +V  +L  S+    +  +    
Sbjct: 837  AIRGFADLLSDEVPAGSPGER---YVRRILTASDRAKGVVRQILAFSR----RSEVSHGT 889

Query: 662  VSLDEAVSEAISLVQLYANE-KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF-- 718
            V L     E + L++        +            +  D   + Q+ LN++ NA     
Sbjct: 890  VDLGRLAEECLGLLRASLPATTGLTFNHGAGAAGTVVDGDRDQLSQVILNLVINANDALD 949

Query: 719  -------------------------------------TPSGGQIIISTTH--TSNEEVIL 739
                                                 T +GG +   T         V L
Sbjct: 950  GVPGDIQVIVARSGDGAELRRLTSRTRPELALAVEVETDAGGGVTAFTGRFDPDRPHVTL 1009

Query: 740  RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
             + D+G G+    +  A  PF     ++    +GTGLGL +  ++V A+ G   + S P 
Sbjct: 1010 SIIDSGPGIPQAVIAHAFDPFFTTKAAR----QGTGLGLAVVHSIVLAHHGAIVVRSHPD 1065

Query: 800  KGTLIEIIFPLYDTSHPHD 818
            +G   +I+ P+       +
Sbjct: 1066 RGCRFDIVLPMGQGDAAAE 1084



 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 61/549 (11%), Positives = 133/549 (24%), Gaps = 62/549 (11%)

Query: 78  PIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL 137
           P        W++DA G L      L   +G      + +    V  +   D    +   L
Sbjct: 40  PAVAAADCLWSVDARGRLI----ALSAPLGVS----LPLPWWRVVRLERTDR-RALAISL 90

Query: 138 KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG 197
           K    + G        G      +DL+            G+ G  +V  +    D    G
Sbjct: 91  KSGQPFSGLRASLR-RGPLAGTGLDLSGR------GRHGGWSGAALVRDDPPLPDFGTDG 143

Query: 198 KRLDKKFSHLHEIKKGHSSVE-------KEKYDIFSQQSPPPHLRMKNKVS--------- 241
           +R       + E      +V        +    +  + +        + V          
Sbjct: 144 RRGADLIQAVLEQTATALAVGTVFVARRERDGTLIPEFAAADPAVGGDIVGHPYRSLGTA 203

Query: 242 -------SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294
                        A   D              ++      F               +  +
Sbjct: 204 CGDVLSTGRPLVVAAGLDERYPLLGRFRRLGVTAYAGAPLFDGSEAPGGVLVALGTSPFD 263

Query: 295 NSKESFEYLSHRNH--------PSLSAYFDEGENLTPETVDKCPIPFFVYS-----HGNL 341
           +       L+                             +D  P   +           +
Sbjct: 264 DPSRVEAILAAAARCVAPHFRAALEERRLSHAAARFSSLLDNLPGMAYRVRMSPDGRRRM 323

Query: 342 FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401
            YA+     L      +   +    S  L   +  D+                  S R  
Sbjct: 324 LYASQGAERLIGITPAEMCRLP---SDRLLELRHPDDRERTLADTIDRLGRQDEVSLRWR 380

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
             + +   S   +       +     +   G+  +       + ++   V +L ++ +  
Sbjct: 381 LARPSGTVSWVRSSERLVGRDGAD--LLVEGLLQDCGAEVEVEDELARRVRELKAVADYA 438

Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVED---ILRKPFTVFLEQNTPSVMNHYLTEILS 518
            D  + ++ +G +   +  V K+ GY VE+   +   P    +      V +  +    +
Sbjct: 439 PDWESWLDEDGGLRWLSPGVEKVTGYTVEECRALAGYP-RSLVCDEDLGVFDTAMAAAGA 497

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRI-IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI 577
                 ++        E    SL I  +      +   L +  I   K  +  L   ++ 
Sbjct: 498 GSAVADIDIRIRRRWGEASWCSLSIQPVIADGHPAGLRLCIRRIDRRKAAEQMLHQREEE 557

Query: 578 AEKESSHKS 586
             +  +   
Sbjct: 558 IARVLAALD 566



 Score =  100 bits (248), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 62/549 (11%), Positives = 142/549 (25%), Gaps = 65/549 (11%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTW- 143
           F    +  G L     E           ++G     +            GD+L       
Sbjct: 167 FVARRERDGTLI---PEFAAADPAVGGDIVGHPYRSLGT--------ACGDVLSTGRPLV 215

Query: 144 --YGKTTLWPIEGTNLYVPIDL-AALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
              G    +P+ G    + +   A  P++  +    G             +   A+    
Sbjct: 216 VAAGLDERYPLLGRFRRLGVTAYAGAPLFDGSEAPGGVLVALGTSPFDDPSRVEAILAAA 275

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
            +  +           +        S     P +  + ++S                   
Sbjct: 276 ARCVAPHFRAALEERRLSHAAARFSSLLDNLPGMAYRVRMSPDGRRRMLYASQGAERLIG 335

Query: 261 LLTSEESSLPEQE--DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
           +  +E   LP     +    +  + T       L    + S  +   R   ++S      
Sbjct: 336 ITPAEMCRLPSDRLLELRHPDDRERTLADTIDRLGRQDEVSLRWRLARPSGTVSWVRSSE 395

Query: 319 ENLTPETVDKCPIPF---------------------------------FVYSHGNLFYAN 345
             +  +  D                                       ++   G L + +
Sbjct: 396 RLVGRDGADLLVEGLLQDCGAEVEVEDELARRVRELKAVADYAPDWESWLDEDGGLRWLS 455

Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405
           P    +T Y   +   +AG   +L+    L   +         S    I    R    +W
Sbjct: 456 PGVEKVTGYTVEECRALAGYPRSLVCDEDLGVFDTAMAAAGAGSAVADIDIRIRR---RW 512

Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC---SILEATS 462
              +  +++  P                       +  ++ +     ++    + L+   
Sbjct: 513 GEASWCSLSIQPVI---ADGHPAGLRLCIRRIDRRKAAEQMLHQREEEIARVLAALDLVR 569

Query: 463 DGIAIINREGIILSTNRAVSKLFGYP-VEDILRKPFTVF-LEQNTPSVMNHYLTEILSLD 520
           + + + N EG I   N A ++L G+     +   P+    L  ++ +     +   L+  
Sbjct: 570 EAVIVSNAEGTISYANAAAARLLGFEAAAALRGHPWRTLGLAGSSSAPFLDIIESSLASR 629

Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
              + E +     + E  + L     ++P    +   + DI   K    +L   ++    
Sbjct: 630 GAWSGELVL---GQGEGAIYLDTRFARMPQD-GFIAVLTDIGARKLADEQLRENQERYRA 685

Query: 581 ESSHKSDFL 589
                 D +
Sbjct: 686 LFETAGDAI 694


>gi|323486665|ref|ZP_08091986.1| hypothetical protein HMPREF9474_03737 [Clostridium symbiosum
           WAL-14163]
 gi|323400046|gb|EGA92423.1| hypothetical protein HMPREF9474_03737 [Clostridium symbiosum
           WAL-14163]
          Length = 1207

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 114/750 (15%), Positives = 246/750 (32%), Gaps = 56/750 (7%)

Query: 95  LKEISEELPKTIGNYAFK----MIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTL 149
              I++++   +G  + +     IG  + +          +  +   ++  + +  +  +
Sbjct: 170 FYFINKQMLNYLGYESEEEFVEDIGGLVSNCMHPGDRRRVDEEVESQIRENDRYVVEYRM 229

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL-DKKFSHLH 208
              +G+  Y+ +      + + +   +      +     V    +     L +     + 
Sbjct: 230 KKKDGS--YIWVHDLGRVVTAEDGRLA---ISSVCLDITVQKHAQQEVMNLYNNIPGAVF 284

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
             +        +  D   +             + ++     +D  +  +K        ++
Sbjct: 285 RCRFDPDYSVIDANDGLFEYIGYTREEFAAMGNRMSAVIHPEDLAVMADKLSSQLLHGNT 344

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
           +  +      + +                E   Y    +             L  + +  
Sbjct: 345 IHNENRLVCKDGSVKWVSVKAQLFSELQGERHFYCVCLDITEEKQLQKHVRELYEKELSY 404

Query: 329 CPI--PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
                       G L  +           +V    I      +++    S  +A     +
Sbjct: 405 FAEISSVGGCLQGRLNVSKNRVENYLSSTAVPIAGIGETYDEIIENLAASAVDAEYGRNI 464

Query: 387 YRSDRTC----------IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
             +              +  S          E     T        +  + +       +
Sbjct: 465 LCALNRKKVLADYAAGKVNYSFEFLRRNEAGELFWGSTGFSSCLHPETGDVIAFF-YTKD 523

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINR---EGIILSTNRAVSKLFGYPVEDIL 493
             + ++ ++        L +I     D IA ++       I++    ++       E + 
Sbjct: 524 ITEAKLQEQ-------LLGTIASLDYDAIAEVDMVKGSRRIINFKHGLTNTVSEKGEYLE 576

Query: 494 R-KPFTVFLEQNTPSVMNHYLTEI------LSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
             +           +    YL ++        L+ + +   +      +  +   R    
Sbjct: 577 ALRNVAD--RCMDEAAREEYLAKMNFTYMKEQLENQDSYSFVLELKEDDGSVRVKRYQAF 634

Query: 547 KLPFSSCYSLTMH-DISEWKQEK----NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
            +            D+++  + +     +L+ A   AE+ ++ KSDFL+R+SHEIRTP+ 
Sbjct: 635 YISKELGRVCITRTDVTDVARREQRQKEELASALIAAEQANAAKSDFLSRMSHEIRTPMN 694

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           AIIG +  I  Q  G   + +  +  + I  S   +L ++ND+LD+S+IESGKM L  + 
Sbjct: 695 AIIGMTA-IAAQALG--NDEQVADCISKIGISSRFLLSLINDILDMSRIESGKMLLKNDK 751

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTP 720
           +  +E ++   S+    A  K +         +      D   ++Q+ +NIL NAI FT 
Sbjct: 752 IPTEEFLNGINSICYSQAAVKDVEYECIVDPVLDDYYIGDAMKLQQVLINILGNAIKFTR 811

Query: 721 SGGQIIISTTHTS----NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
            GG++  S         +  +   + DTG+GM    L     PF Q          GTGL
Sbjct: 812 EGGKVTFSAAVKRKMKNDAVIRFVINDTGIGMDEDYLPHIFDPFSQESTGTTSLYGGTGL 871

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           GL ++K++VD   GK  + S    GT   +
Sbjct: 872 GLAISKSIVDLMDGKITVRSIKGLGTEFTV 901



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 27/286 (9%), Positives = 82/286 (28%), Gaps = 20/286 (6%)

Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLL 351
                    E   +     + +   + + L  E+V    +  ++      ++ N   L  
Sbjct: 121 FAEPGSSQREGEHYPLTLVVESIARQRQELLNESVPGGMMGGYIGEGFPFYFINKQMLNY 180

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411
             Y+S ++     G                + V     +        R+        + +
Sbjct: 181 LGYESEEEFVEDIGGLVSNCMHPGDRRRVDEEVESQIRENDRYVVEYRMK---KKDGSYI 237

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI--IN 469
            +  +      +    +  + +  +    +  ++++        ++       +     +
Sbjct: 238 WVHDLGRVVTAEDGR-LAISSVCLDITVQKHAQQEV-------MNLYNNIPGAVFRCRFD 289

Query: 470 REGIILSTNRAVSKLFGYPVED--ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
            +  ++  N  + +  GY  E+   +    +  +     +VM   L+  L      T+  
Sbjct: 290 PDYSVIDANDGLFEYIGYTREEFAAMGNRMSAVIHPEDLAVMADKLSSQLLHGN--TIHN 347

Query: 528 ITLGSTKEEKLLSLRIII---KKLPFSSCYSLTMHDISEWKQEKNK 570
                 K+  +  + +      +L     +     DI+E KQ +  
Sbjct: 348 ENRLVCKDGSVKWVSVKAQLFSELQGERHFYCVCLDITEEKQLQKH 393



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/403 (8%), Positives = 97/403 (24%), Gaps = 35/403 (8%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFK--MIGMRLCDVSDILHIDP-NNHIGDLLKRQN 141
           F    D    + + ++ L + IG    +   +G R+  V     +    + +   L   N
Sbjct: 284 FRCRFDPDYSVIDANDGLFEYIGYTREEFAAMGNRMSAVIHPEDLAVMADKLSSQLLHGN 343

Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF-GIVHVNRVDNDPRALGKRL 200
           T + +  L   +G+  +V +            E  G R F  +      +   +   + L
Sbjct: 344 TIHNENRLVCKDGSVKWVSVKAQLF------SELQGERHFYCVCLDITEEKQLQKHVREL 397

Query: 201 DKKFSHLHEIKKGHSSVEK----------EKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK 250
            +K               +          E Y   +           +++       A  
Sbjct: 398 YEKELSYFAEISSVGGCLQGRLNVSKNRVENYLSSTAVPIAGIGETYDEIIENLAASAVD 457

Query: 251 DDVLKT--------EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302
            +  +         +      + + +   +          +     F +  +        
Sbjct: 458 AEYGRNILCALNRKKVLADYAAGKVNYSFEFLRRNEAGELFWGSTGFSSCLHPETGDVIA 517

Query: 303 LSHRNHPSLSAYFDEGENLTPET-VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIE 361
             +    + +   ++          D       V     +             K      
Sbjct: 518 FFYTKDITEAKLQEQLLGTIASLDYDAIAEVDMVKGSRRIINFKHGLTNTVSEKGEYLEA 577

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
           +       +D     +  A       +       + + +  ++ +  +     +  F  +
Sbjct: 578 LRNVADRCMDEAAREEYLAKMNFTYMKEQLENQDSYSFVLELKEDDGSVRVKRYQAFYIS 637

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
            +            +  D    +   + +  +L S L A    
Sbjct: 638 KELG---RVCITRTDVTDVARRE---QRQKEELASALIAAEQA 674


>gi|332532699|ref|ZP_08408575.1| hypothetical protein PH505_ah00830 [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332037915|gb|EGI74364.1| hypothetical protein PH505_ah00830 [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 888

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 80/251 (31%), Positives = 143/251 (56%), Gaps = 10/251 (3%)

Query: 562 SEWKQEKN---KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
           S  K  +    +L  A   AE+ +  KS FLA +SHEIRTPLTAI+GF+E +       +
Sbjct: 383 SRTKALEAMNSQLELAIGQAEQANQLKSRFLANMSHEIRTPLTAIMGFTEQLL--HNDKV 440

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
            N +   + + I R+   +L+++N++LD+SKIE+ K+ +    +++ + V +  S++Q  
Sbjct: 441 ANDKQ--HLSTILRNSKHLLELINNILDLSKIEAEKLAVDLSALNVVQLVHDIESIIQPL 498

Query: 679 ANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-TSNEE 736
           A EK++ +   +   +PR I +D+  +KQI +NI +NA+ FT +G  + I   +  ++++
Sbjct: 499 AQEKQLTLNIDYQLPLPRTIYSDVTRLKQILINIANNAVKFTENGS-VSICVHYLQASQK 557

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           +   ++DTG+GM+ +++E+  KPF Q   +   R  GTGLGL ++K +     G   + S
Sbjct: 558 LEFVIKDTGIGMSEHQIERVFKPFEQADATTTRRFGGTGLGLCISKNLALLLGGDVTLES 617

Query: 797 TPAKGTLIEII 807
               G+   I 
Sbjct: 618 EVGVGSRFTIR 628


>gi|294637120|ref|ZP_06715431.1| sensor kinase protein RcsC [Edwardsiella tarda ATCC 23685]
 gi|291089691|gb|EFE22252.1| sensor kinase protein RcsC [Edwardsiella tarda ATCC 23685]
          Length = 999

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 119/578 (20%), Positives = 201/578 (34%), Gaps = 56/578 (9%)

Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
            D  ++        S          F   N  +          Q +    +         
Sbjct: 200 ADFSIRNVPLEGGNSLRLLQQRVNHFRNNNDKEQVLYWVVPGAQRDVGALYITAPVYAAT 259

Query: 310 SLSAYFDEGENLTPETVDK---CPIPF-FVYSHGNLFYA---NPSFLLLTKYKSVDD--I 360
            L A     + L  E +      PI    +   G++  +   N   L L      DD   
Sbjct: 260 HLEAVLGIEQTLRLEELTNPSVLPIGVTLLSDDGDVLLSYAENGGALPLLNGLPEDDNYF 319

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
               G  TLL   KL  +       L                ++   E    +       
Sbjct: 320 GYNSGYDTLLLKKKLRPSGLTIVYSL---------------PVRVLLERFNLLLINAIVL 364

Query: 421 ANQFPENMPQNGIEPED---VDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILS 476
                  +       E    +    N  ++E        I+ +   GI+I+   +G  + 
Sbjct: 365 NLISALVLFVLTWLFERKMFLPAENNALRLEEHEQFNRKIVASAPVGISILRVSDGSNIL 424

Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
           +N                  +T              +  +L+ +    L+ I    T + 
Sbjct: 425 SNELA-------------HNYTRQFTPEDRQ----RIVRLLNEEQVSVLDVI----TAQN 463

Query: 537 KLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
           + L +  +  +          M D+S   + +  L      AE+ S  KS FLA VSHE+
Sbjct: 464 QNLQISFVRSRYRNEEVAICAMVDVSTRVKMEESLQEMAAAAEQASQSKSMFLATVSHEL 523

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTPL  IIG  ++++ +                +  S  L+L I+ND+LD SKIES ++ 
Sbjct: 524 RTPLYGIIGNLDLLRTKTL----PEEVQRLLGAMSNSSGLLLKIINDILDFSKIESEQLK 579

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNA 715
           +        E +   I         KR+ +      ++P  I  D+  ++Q+  N+LSNA
Sbjct: 580 IEPGRFVAREVIPHIIGNYLPLVVRKRLTLYCFIEPDVPAEISGDIMRIQQVLSNLLSNA 639

Query: 716 IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           I FT +G  II+         +  R+RDTG+G+   ++ +   PF Q+ +  Q    GTG
Sbjct: 640 IKFTDTG-CIILQARVNDF-YLEFRIRDTGMGIPARDVLRLFDPFFQVGSGVQRHFHGTG 697

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
           LGL + + +V    G   + S P  G++  I  P+Y  
Sbjct: 698 LGLAICEKLVSLMDGDIAVESEPGLGSIFTIRLPMYQA 735


>gi|262196464|ref|YP_003267673.1| signal transduction histidine kinase with CheB and CheR activity
            [Haliangium ochraceum DSM 14365]
 gi|262079811|gb|ACY15780.1| signal transduction histidine kinase with CheB and CheR activity
            [Haliangium ochraceum DSM 14365]
          Length = 2468

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 115/766 (15%), Positives = 231/766 (30%), Gaps = 87/766 (11%)

Query: 91   AHGYLKEISEELPKTIGNYAFKMI-GMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
              G +K ++  L + +G     +  G+   D+         +     L+R          
Sbjct: 1611 RDGRMKRLNPALMRLLGLSDEDVARGLTWLDLIPAERASLYDEAMAQLERTG-------- 1662

Query: 150  WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVH---VNRVDNDPRALGKRLDKKFSH 206
                G    V +  +   I + +  F   +G   V             A   +L      
Sbjct: 1663 --RVGPAERVLVAKSGRHIPALSSSFQIGQGDEFVTFIVDLTEQKQAAAERAKLAAIVES 1720

Query: 207  -----LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
                 L +   G         +     +    +    ++     +    D +L       
Sbjct: 1721 SDDAILSQSLDGRIESWNRGAERLYGYAADEAIGRPVEILIPATHGDENDRLLAGVSAGD 1780

Query: 262  LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
               +  ++  ++    + ++  T       +      S             A   E E+ 
Sbjct: 1781 TVVQHETMRLRKSGAEVPVS-ITMSAIIDEMGACVGISMVTRDITEQKRAEARLRESEDR 1839

Query: 322  TPE-------TVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
              E            P+             AN   L L + +S         + TLL A 
Sbjct: 1840 YRENAAEMEAVYATLPVGLGLSDRQHTFLRANERLLELLELESARV--CDSAIETLLPAL 1897

Query: 374  KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
             +     I  +       +      R                      +   +    + +
Sbjct: 1898 AVHVAPLIDQIF-----ESGEPILNREFRAASGGGVERHWLSSFAPVFDTDEQVRAVSWM 1952

Query: 434  EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI- 492
              +  +    + ++     +   +L  +   + + +  G +L+ + A +   GY ++D+ 
Sbjct: 1953 VQDVTERTEAETRLRESEWRFRQVLVNSPLPMMMYDDAGRVLALSEAWTATTGYQLDDMP 2012

Query: 493  -LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
             + +   +        V+ +  +   S    + +E        EE+ +            
Sbjct: 2013 SIGRWAELAYRDEAGDVLTYLGSLWSSEASGEHIELRVFAKDGEERTILFSGAPLGTSPD 2072

Query: 552  SCYSLTM--HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                      D++E KQ +  L        + S+ K  FLA + HE+R PL AI G +E+
Sbjct: 2073 GRRLRLWAGTDLTERKQAEEAL-------REASAQKDQFLAMLGHELRNPLAAIRGAAEL 2125

Query: 610  IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
            +     G     R       I+R    +  +++ LLD+S++  GK+ L  + V + E + 
Sbjct: 2126 LLLSDGGGDELERTR---GIIERQSAHMAKLIDGLLDVSRVVLGKIVLDSKVVDVVEILR 2182

Query: 670  EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
            + +           + +R         I  D   + QI  N+L+NA+ FT + G I IS 
Sbjct: 2183 DLMQDHADRIERSGLSLRLDLPGEPIWIDGDRVRLTQIFGNLLANALQFTSAPGTITISA 2242

Query: 730  T---HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM-- 784
                 +     ++RVRDTG G+    L    +PF Q                  A+ +  
Sbjct: 2243 ETIGSSPAGTALVRVRDTGAGIAPELLPHVFEPFRQA-----------------AQNIDR 2285

Query: 785  ---------------VDANMGKFYIFS-TPAKGTLIEIIFPLYDTS 814
                           V+ + G     S    +G    +  PL   +
Sbjct: 2286 AAGGLGLGLALVRGLVELHGGHIEASSGGAERGAQFTLHLPLAQRA 2331



 Score =  130 bits (327), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 53/495 (10%), Positives = 127/495 (25%), Gaps = 41/495 (8%)

Query: 103  PKTIGNYAFKMIG-MRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWP-IEGTNLYV 159
               +G      +      +      +      + +++                +G  L+V
Sbjct: 1222 EALLGEVVEAPLSLDTWMERVHPDDVARLEQELSEIVHGTRQLQVLEYRLRHRDGRYLHV 1281

Query: 160  PIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS-HLHEIKKGHSSVE 218
             +                 R  G++          A     +++    +  +  G  +  
Sbjct: 1282 EVHA-----RDTVGADGVTRRNGVILNVHARKQAEAELADRERRMRLAVGALDAGVFAHA 1336

Query: 219  KEKYDIFSQQS---------PPPHLRMKNKVSSLTEYYAHKDDVLK--TEKYPLLTSEES 267
            +   +     +         P            L     H+DDV      +   +     
Sbjct: 1337 EPVGEELYLSARWLGMLGLAPSALPPAPRFYDWLQAELIHEDDVASFANARAAFVAGHTG 1396

Query: 268  SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL-----SHRNHPSLSAYFDEGENLT 322
             L  +        +    +     +  + +     L                  E E   
Sbjct: 1397 KLDLELRLRHAEGHWMWGRMVADAVARDDEGRLLRLTGLLWDVTAAKEAERRLRESEENF 1456

Query: 323  PETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
                +  P   +     G L Y N   L L      +  +    L  +  + + +   A 
Sbjct: 1457 RRLAESIPHMVWTARPSGGLDYCNQRALELLGRSQAELSQPDAWLEAIHPSERAAVTAAW 1516

Query: 382  KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK---------ANQFPENMPQNG 432
               M   S      A  RL           ++  +P                   +   G
Sbjct: 1517 HEAM---SLGREFRADLRLRDASCGAYRWHSVHAVPAHGDGDRDAPAGERTGARVLRWFG 1573

Query: 433  IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
                  + +  + ++     +L    E +  GI  + R+G +   N A+ +L G   ED+
Sbjct: 1574 TFTNIHERKAFEDRLSESEQRLQRTFEGSPLGIVFLQRDGRMKRLNPALMRLLGLSDEDV 1633

Query: 493  -LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
                 +   +     S+ +  + ++         E++ +   K  + +       ++   
Sbjct: 1634 ARGLTWLDLIPAERASLYDEAMAQLERTGRVGPAERVLVA--KSGRHIPALSSSFQIGQG 1691

Query: 552  SCYSLTMHDISEWKQ 566
              +   + D++E KQ
Sbjct: 1692 DEFVTFIVDLTEQKQ 1706



 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 47/547 (8%), Positives = 124/547 (22%), Gaps = 57/547 (10%)

Query: 69   DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI-GMRLCDVSDILHI 127
            +SE  F            W     G L   ++   + +G    ++       +       
Sbjct: 1451 ESEENFRRLAESIP-HMVWTARPSGGLDYCNQRALELLGRSQAELSQPDAWLEAIHPSER 1509

Query: 128  DPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSR------NREFSGF--- 178
                            +             Y    + A+P +          E +G    
Sbjct: 1510 AAVTAAWHEAMSLGREFRADLRLRDASCGAYRWHSVHAVPAHGDGDRDAPAGERTGARVL 1569

Query: 179  RGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP---HLR 235
            R FG                  +++     E         +    +            L 
Sbjct: 1570 RWFGTFTNIHERKAFEDRLSESEQRLQRTFEGSPLGIVFLQRDGRMKRLNPALMRLLGLS 1629

Query: 236  MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN 295
             ++    LT       +        +   E +      +   +  +         + Q  
Sbjct: 1630 DEDVARGLTWLDLIPAERASLYDEAMAQLERTGRVGPAERVLVAKSGRHIPALSSSFQ-- 1687

Query: 296  SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKY 354
              +  E+++     +               V+         S  G +   N     L  Y
Sbjct: 1688 IGQGDEFVTFIVDLTEQKQAAAERAKLAAIVESSDDAILSQSLDGRIESWNRGAERLYGY 1747

Query: 355  KSVDDIEIAGGL----------STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
             + + I     +            LL      D       M  R     +  S  +  I 
Sbjct: 1748 AADEAIGRPVEILIPATHGDENDRLLAGVSAGDTVVQHETMRLRKSGAEVPVSITMSAI- 1806

Query: 405  WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC-------SI 457
                             ++    +  + +  +  + +  + ++     +         ++
Sbjct: 1807 ----------------IDEMGACVGISMVTRDITEQKRAEARLRESEDRYRENAAEMEAV 1850

Query: 458  LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
                  G+ + +R+   L  N  + +L       +        L       +   + +I 
Sbjct: 1851 YATLPVGLGLSDRQHTFLRANERLLELLELESARVCDSAIETLL-PALAVHVAPLIDQIF 1909

Query: 518  SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS----LTMHDISEWKQEKNKLSH 573
                   L +    ++              +  +          + D++E  + + +L  
Sbjct: 1910 ESGEP-ILNREFRAASGGGVERHWLSSFAPVFDTDEQVRAVSWMVQDVTERTEAETRLRE 1968

Query: 574  AKKIAEK 580
            ++    +
Sbjct: 1969 SEWRFRQ 1975



 Score = 99.7 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/458 (9%), Positives = 104/458 (22%), Gaps = 33/458 (7%)

Query: 154  GTNLYVPIDLAALPIYSRNREFSG---FRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
            GT +   + L        +R+        G  I    R      A      +    +   
Sbjct: 1142 GTEVIGAVSLFTRRRRLVDRQLVHSLDAIGTTIGEFVRRSEAESATRLSEMRLRMAIDAA 1201

Query: 211  KKGH--SSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
                  S V   +              ++  +S  T       D +   +  L      +
Sbjct: 1202 AAVVFESDVGARQVRSLFGSEALLGEVVEAPLSLDTWMERVHPDDVARLEQELSEIVHGT 1261

Query: 269  LPE---QEDFHTINLNQYTKKQYFG---TLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
                  +      +      + +          ++ +   L+        A   + E   
Sbjct: 1262 RQLQVLEYRLRHRDGRYLHVEVHARDTVGADGVTRRNGVILNVHARKQAEAELADRERRM 1321

Query: 323  PETVDKCPIPFFVYSH--GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
               V       F ++   G   Y +  +L +                 L       D+ A
Sbjct: 1322 RLAVGALDAGVFAHAEPVGEELYLSARWLGMLGLAPSALPPAPRFYDWLQAELIHEDDVA 1381

Query: 381  IKP-VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
                                L                     +     +   G+  +   
Sbjct: 1382 SFANARAAFVAGHTGKLDLELRLRHAEGHWMWGRMVADAVARDDEGRLLRLTGLLWDVTA 1441

Query: 440  TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP-FT 498
             +  +R++         + E+    +      G +   N+   +L G    ++ +   + 
Sbjct: 1442 AKEAERRLRESEENFRRLAESIPHMVWTARPSGGLDYCNQRALELLGRSQAELSQPDAWL 1501

Query: 499  VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE-EKLLSLRIIIKKLPFSS----- 552
              +  +  + +     E +SL                        +              
Sbjct: 1502 EAIHPSERAAVTAAWHEAMSLGRE--FRADLRLRDASCGAYRWHSVHAVPAHGDGDRDAP 1559

Query: 553  ----------CYSLTMHDISEWKQEKNKLSHAKKIAEK 580
                       +  T  +I E K  +++LS +++  ++
Sbjct: 1560 AGERTGARVLRWFGTFTNIHERKAFEDRLSESEQRLQR 1597



 Score = 62.7 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/401 (10%), Positives = 105/401 (26%), Gaps = 25/401 (6%)

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
            L + F+ L +  +        +  +  +      L    +   + E             
Sbjct: 474 ALRELFTTLSKPWRLFQRAGAARPLLMRRGRSTGRLPRIAQRPPVDEVDIASAARDAMLA 533

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
             +  S   S   +  +   ++  Y          +   +    L  R   +L       
Sbjct: 534 VRVPPSVAVSHEGRVLYVHGDIGAYLHYPKGEPRLDLLADLRADLVTRVRAALYKC---- 589

Query: 319 ENLTPETVDKCPIPFFVYSHGNLFYANPS-----------FLLLTKYKSVDDIE--IAGG 365
                 TV+    P      G    A+P+           F  +   +  DD        
Sbjct: 590 -RRDGVTVEALSTPERGGGPGTRITASPAPQLGEGAAVLSFEQVAGVEPADDTVPVETPE 648

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
              L++  +   N   + +     +        R    +    N    +     +A    
Sbjct: 649 QENLIEQLERELNATREDLRNTVEELESANEELRTSHEESMSMNEELQSANEELEAMTEE 708

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
                  +   +   +    ++E     L +   +T      ++ E  I     A ++  
Sbjct: 709 LRSLNEELATINRQLKDKIGQLEKTHDDLSNFFASTKLATLFLDDERRIKRFTPAAAEFL 768

Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
               E+   +             ++  +  +L   + +T E      T + +    R++ 
Sbjct: 769 QLD-EEDEGRRIDDIARPLLHMDLDDDVAAVLDELIPRTRE----LQTPDGRWFVRRVLP 823

Query: 546 KKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
            +           T  DI+E K+   +L   +++    +  
Sbjct: 824 YRTEARRIEGVVATWTDITELKRTAAQLEVRERMQGVIARL 864


>gi|37678908|ref|NP_933517.1| phosphate regulon sensor protein [Vibrio vulnificus YJ016]
 gi|37197649|dbj|BAC93488.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
          Length = 432

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 74/426 (17%), Positives = 159/426 (37%), Gaps = 36/426 (8%)

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
           V         +    RL    W+ +            +         NG+       R  
Sbjct: 37  VATALQLGWHLHNQVRLSAWLWDEKR-------LTPPSGSGNWESLFNGLYRLQQRQRRK 89

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
           ++++   + +  +  E+  D + +   EG I+  N+    L G+   +   +P +  L  
Sbjct: 90  RKELTNLIRRFRNGAESLPDAVVVFRAEGNIVWCNKLAQHLLGFHWPEDSGQPISNLLRT 149

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                          L++   L              +L + I        + + + D+++
Sbjct: 150 PDFIKYLSGNDFSEPLEMSSPLNVER----------TLELRIVPYTEGE-HLMVVRDVTQ 198

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            KQ +                + +F A VSHE+RTP+T + G+ E+   +    L  P +
Sbjct: 199 LKQLEG--------------MRRNFFANVSHELRTPMTVLQGYLEM--TEDPDMLVGPMW 242

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            +    +    N +  +VN LL +SKIE+  ++   E V +   +          + + +
Sbjct: 243 GKAHRVMTEQLNRMNSLVNQLLTLSKIEASPIHELDEVVDVPAMLEVLEKEAVSLSGDNQ 302

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
             I       + ++ AD   ++    N++ NA+ +TP+G  + +   + +++   L V D
Sbjct: 303 HAISFQVDKAL-KVYADEDQLRSAISNLVYNAVKYTPAGANVQVRW-YRNSKGACLEVED 360

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           +G G+    + +  + F ++  ++     G+GLGL + K  +  +     I S    G+ 
Sbjct: 361 SGDGIEPQHIHRLTERFYRVDKARSRDTGGSGLGLAIVKHALTHHDTHLDIQSKVGSGSK 420

Query: 804 IEIIFP 809
              + P
Sbjct: 421 FSFVLP 426


>gi|310658354|ref|YP_003936075.1| histidine kinase [Clostridium sticklandii DSM 519]
 gi|308825132|emb|CBH21170.1| putative Histidine kinase [Clostridium sticklandii]
          Length = 965

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 86/259 (33%), Positives = 137/259 (52%), Gaps = 8/259 (3%)

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
                 +I   +Q +  L  AKK A++ +  KS F+AR+SHEIRTPL AI G + ++K  
Sbjct: 293 IIRLRKEIRVREQIQKDLKKAKKEADEANEFKSGFMARMSHEIRTPLNAITGMAYLLKKT 352

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
                       Y + I ++ N +L I+ND+LD SKIE+GK+ +     S+D+ +   ++
Sbjct: 353 DISLT----QSMYVDRITQASNNMLSIINDILDFSKIEAGKVEIEEASFSIDDIIQNVVN 408

Query: 674 LVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQ---IIIST 729
           +V     E+ I  R S  + +P   + D + ++Q+ LNIL+NA  FT  G     I +  
Sbjct: 409 IVSYKIEEQEIGFRLSKDSQLPNWFIGDPKRIEQVLLNILNNAAKFTQKGEVALDIRLIA 468

Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
             +    +   ++DTG+GMT  ++EK   PF Q  +S   R  G+GLGL + K +V+   
Sbjct: 469 KESDIYHISFNIKDTGIGMTQQQVEKLFSPFVQGDSSINRRFGGSGLGLSIVKNLVEMMG 528

Query: 790 GKFYIFSTPAKGTLIEIIF 808
           G   +FSTP +G+   I  
Sbjct: 529 GSINVFSTPDEGSTFIINL 547


>gi|167957382|ref|ZP_02544456.1| two-component sensor kinase, probably involved in phosphate sensing
           [candidate division TM7 single-cell isolate TM7c]
          Length = 619

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 84/375 (22%), Positives = 162/375 (43%), Gaps = 34/375 (9%)

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP---SVMNHY 512
           +I+ + SDG+ +    G I+  N A  ++ G+   D L       L+        + +  
Sbjct: 48  TIIRSISDGVIMTKDSGQIILINPAAQRMIGWSAADALGLHINSVLKFEDEKGNPISDTA 107

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572
              ++SL  ++      +  TK  K L++ ++I  L       +   D +          
Sbjct: 108 HPVVVSLANKKVQRINLVVVTKSNKKLNISLMITPL-DEGGVIVVFRDTT---------- 156

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
                   E   +++F++  SHE+RTP+ +I G+  +  N +   + + +  EY +    
Sbjct: 157 ----KERAEEREQAEFISTASHEMRTPVASIEGYLGLALNPKVSKI-DAKAYEYISKAHE 211

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI------ 686
           S   +  ++ DLL+IS+ E G++      V+  +   +A   +   A EK + +      
Sbjct: 212 SAQYLGRLLRDLLEISRAEDGRLKNRITAVNAIDISRKATEDLIKEAREKGLNLLYKPTG 271

Query: 687 ------RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
                   + +  +  + AD   +++   N++ NAI +TPSG QI +    + NE +   
Sbjct: 272 GRSKSGDVTISP-VLYVRADKDRLQECLSNLIENAIKYTPSG-QIAVDVNAS-NEYIRFS 328

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V DTG+G+   ++    + F ++ NS      G+GLGL L + MV++  G+    ST  K
Sbjct: 329 VSDTGIGIPPEDIPHLFQKFYRVDNSDTREINGSGLGLYLTRRMVESMNGRIGATSTRNK 388

Query: 801 GTLIEIIFPLYDTSH 815
           G+   I  P    + 
Sbjct: 389 GSTFYIDLPRIRNAQ 403


>gi|254229817|ref|ZP_04923223.1| tmao reductase sytem sensor tors [Vibrio sp. Ex25]
 gi|262395617|ref|YP_003287470.1| sensor protein TorS [Vibrio sp. Ex25]
 gi|151937653|gb|EDN56505.1| tmao reductase sytem sensor tors [Vibrio sp. Ex25]
 gi|262339211|gb|ACY53005.1| sensor protein TorS [Vibrio sp. Ex25]
          Length = 987

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 79/255 (30%), Positives = 128/255 (50%), Gaps = 9/255 (3%)

Query: 564 WKQEKNKLSHA--KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
            +  +  L+HA  +K AE+ S  KS FLA +SHEIRTP+  ++G + ++ +    P+   
Sbjct: 447 RRLNEEVLNHAKARKQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLIDSGLNPI--- 503

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
               YA  I+RSG  +L I+ND+LD SKIE+G + +      L + V +   L+   A E
Sbjct: 504 -QKRYAEIINRSGKTLLAILNDVLDYSKIEAGHLEIRHMGFDLHQMVEDTFQLMNSRAQE 562

Query: 682 KRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVIL 739
           KR+L      +++ R    D+  + Q+  N++ NAI FT  G   I +S       +V+ 
Sbjct: 563 KRLLFSYHIESDVSRYWKGDVTRISQVLNNLVGNAIKFTDEGEIDIYVSLNPEDESQVLF 622

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V DTG+G+   +       F Q       +  GTGLGL ++K +++A  G   + S   
Sbjct: 623 EVSDTGIGIAKKDQRTLFDAFTQAEGGMS-QTGGTGLGLAISKRIIEAMGGILEVDSEEG 681

Query: 800 KGTLIEIIFPLYDTS 814
            G+      PL ++ 
Sbjct: 682 HGSRFWFSIPLEESE 696


>gi|256828525|ref|YP_003157253.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfomicrobium baculatum DSM 4028]
 gi|256577701|gb|ACU88837.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfomicrobium baculatum DSM 4028]
          Length = 744

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 99/550 (18%), Positives = 198/550 (36%), Gaps = 57/550 (10%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
               +   E E       +  P+  F     G L   N +   +  Y S DD  ++ G  
Sbjct: 211 ERQVSTLAESEEKYRVIFNNSPVGIFRSTLDGELLEGNAALGNMFGYASRDDFLVSSG-- 268

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
            L   P  +D++A +   L        A S+ +  ++ +  +   +      + +     
Sbjct: 269 -LRVEPVYADSSA-REAYLRELLAASGALSSEMKFVRKDGTHFEGV-LTASIQQDAEGRP 325

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFG 486
           +  NG+  +    +  ++++     +   +   + D I ++N  EG I+  N A S+L G
Sbjct: 326 VFLNGVVEDVSARKKAEKRLRQSEEKFSRLFRLSPDVIVVMNMTEGRIIDVNEAFSRLTG 385

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
           +   + + K          P++       + +      ++              L   + 
Sbjct: 386 FAYHEAVGKTAQELGLYADPAMRELVRRRMQTSGQIDNVDFSLGCKDGRTISCVLSSQLL 445

Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
            +   SC    + D++E+K+ +  +  ++K+            A V+HEI  PL  I+  
Sbjct: 446 TVGDESCVMAVLRDVTEFKRMQELMIQSEKMISVGGIA-----AGVAHEINNPLGIIMVS 500

Query: 607 SEVIKNQRFGPLGN---------------PRYI------EYANYIDRSGNLVLDIVNDLL 645
           S+ +  +                       RY+      ++   I  +     DI+  +L
Sbjct: 501 SQNLVQRTRPDFSKNIEAAENIGLDMNLFDRYMRVRGLYDFVKNIQDAAVRAADIIRHML 560

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISL------VQLYANEKRILIRTSFANNIPRILA 699
           D S+    +         L   +  A  L      ++   + K+I I+   A N P +  
Sbjct: 561 DFSR----RSESRRTICDLRTVIERAAHLAGNDFELKKSYDFKKIDIQWECAENFPPVSC 616

Query: 700 DLRSVKQIALNILSNAIHFTPSG------GQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753
               ++Q+ LN+  NA     S        +I++     ++  V+L V D G GM     
Sbjct: 617 TETEIEQVFLNLFRNAAQAMASAQPQIMAPRIVVRMKAEAD-RVVLEVEDNGPGMPPEVQ 675

Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA-NMGKFYIFSTPAKGTLIEIIFPLYD 812
            +A +PF            GTGLGL ++  ++   + G+  + S P +GT   I  P+ +
Sbjct: 676 RRAFEPFFTTKPPGV----GTGLGLSVSYFIITRSHDGQMRLESRPGQGTHFTIELPVPE 731

Query: 813 T--SHPHDCI 820
                  +CI
Sbjct: 732 PGGQKEDECI 741



 Score = 43.9 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 17/184 (9%), Positives = 46/184 (25%), Gaps = 18/184 (9%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH---IGDLLKRQNT 142
            +     G L E +  L    G  +     +      + ++ D +     + +LL     
Sbjct: 235 IFRSTLDGELLEGNAALGNMFGYASRDDFLVSSGLRVEPVYADSSAREAYLRELLAASGA 294

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
              +      +GT+    +  +               G  +V             ++ ++
Sbjct: 295 LSSEMKFVRKDGTHFEGVLTASIQ--QDAEGRPVFLNG--VVEDVSARKKAEKRLRQSEE 350

Query: 203 KFSHLHEIKKGH-----------SSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD 251
           KFS L  +                 V +    +          +   ++    +    + 
Sbjct: 351 KFSRLFRLSPDVIVVMNMTEGRIIDVNEAFSRLTGFAYHEAVGKTAQELGLYADPAMREL 410

Query: 252 DVLK 255
              +
Sbjct: 411 VRRR 414



 Score = 40.8 bits (94), Expect = 0.92,   Method: Composition-based stats.
 Identities = 13/152 (8%), Positives = 42/152 (27%), Gaps = 15/152 (9%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW- 150
            G + +++E   +  G    + +G    ++     +  +  + +L++R+    G+     
Sbjct: 370 EGRIIDVNEAFSRLTGFAYHEAVGKTAQEL----GLYADPAMRELVRRRMQTSGQIDNVD 425

Query: 151 ----PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                 +G  +   +    L +   +          ++         + L  + +K  S 
Sbjct: 426 FSLGCKDGRTISCVLSSQLLTVGDES------CVMAVLRDVTEFKRMQELMIQSEKMISV 479

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKN 238
                     +      I             +
Sbjct: 480 GGIAAGVAHEINNPLGIIMVSSQNLVQRTRPD 511


>gi|116696024|ref|YP_841600.1| signal transduction histidine kinase [Ralstonia eutropha H16]
 gi|113530523|emb|CAJ96870.1| signal transduction histidine kinase containing a receiver domain
           (hybrid) [Ralstonia eutropha H16]
          Length = 1109

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 116/716 (16%), Positives = 228/716 (31%), Gaps = 54/716 (7%)

Query: 112 KMIGMRLCDVSDILH-IDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDL---AALP 167
           +    R+ ++S   + +  ++ +   L+   T     +   +E   L  P  +    + P
Sbjct: 66  EYFIRRMAEISGPEYRLVRSDRLAGQLEAMLTGVPPGSARAVEVPGLTNPATMLMGTSAP 125

Query: 168 IYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ 227
              R    S    F I         P+ +             +             + ++
Sbjct: 126 AAQRPATVSHIVRFAIFERAYWGKAPQRMRSAFLAADGSQAYVTPALPGAPGLNGPLLAE 185

Query: 228 QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287
                   + N+ S   +        L T  Y         L         + N      
Sbjct: 186 VVSNWAKALANR-SREAQAETPVASPLWTGPYQGTIERGPILSCFLPVLDASGNLVAYGA 244

Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPS 347
               ++    +     +                             F    G L Y    
Sbjct: 245 TAIPVRALMDDVSIPDATHTASGSR-------------------AMFFDGQGRLLYRGSD 285

Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
              L      + +    G      A    +  ++    + R      A +  L     + 
Sbjct: 286 AGWLRPQALGERVARELGSGGQSVAYWF-EQGSLMIGRMERDHGWRAAYAYPLSQALADH 344

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI-A 466
            ++LA   + +                   V  + +  ++E       ++++A   G+  
Sbjct: 345 GSALAAALLLYGLGVLAVLTGAGMLRRRMLVPMQEDAERIEDSERFNRTVMQAAPVGLRV 404

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
           +   +  +   N   ++          R      L                  D    LE
Sbjct: 405 VRTADAHVRLENALAAQWLPLDTRTAGRPWLDQML--------------ARRGDQPARLE 450

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
                     + + +     +          +HD++  ++    L+ A+++A++ S+ KS
Sbjct: 451 LQVPSGHGGARDVLVVGRHTRFEGEDVLLCAIHDVTGEREAHRALARARRLADEASAAKS 510

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
            FLA +SHEIRTPL  ++G  E++   +          E  + I  S  ++L I++DLLD
Sbjct: 511 QFLAAMSHEIRTPLYGMLGTLELLSLTQMAH----SQREMLSTIQSSSQVLLQILDDLLD 566

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706
            S+ E+G++ L   P    + +   +      A +K I +       +P ++ D   V+Q
Sbjct: 567 YSRAEAGQIELDAVPFDPVDLLESTVRAQAPIALQKGIALPCYPQPGLPCLIGDPVRVRQ 626

Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSNEE---------VILRVRDTGVGMTNYELEKAM 757
           I  N+L NA+ FT  G  +I+        E         + L V DTG G+      +  
Sbjct: 627 IIGNLLDNALKFTAQG-HVIVRLQRAPQSEAPDADGRIGIQLEVADTGPGIAPEVQARLF 685

Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
           +PF Q   S   R  G+GLGL + + +     G   + S P KG++  ++  L + 
Sbjct: 686 EPFVQADASTARRFGGSGLGLSICRRLAALMDGSISVQSEPGKGSVFRVLLRLPEA 741


>gi|86750880|ref|YP_487376.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           HaA2]
 gi|86573908|gb|ABD08465.1| multi-sensor hybrid histidine kinase / cell cycle control histidine
           kinase CckA [Rhodopseudomonas palustris HaA2]
          Length = 874

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 113/680 (16%), Positives = 225/680 (33%), Gaps = 46/680 (6%)

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFR-GFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK- 211
           G     P  L  L + +    F  F    GIV       D   L    +  F  +     
Sbjct: 71  GRAEAQPYILGLLALLAMVGLFMLFAFAAGIVGFADRAADDPVLRAIAEGAFDGIAVTDA 130

Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271
           +GH       Y   +  +    +R   +V       +     L          +E     
Sbjct: 131 RGHVVYANPVYLALTGAATMQDVRPVERVFIGNPDVSEAVFRLLKAAREGKRLQEEVRVA 190

Query: 272 QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI 331
             D       +   +      +   +  +                +      E +D  P 
Sbjct: 191 GADGAQGRWMRMRVRPLGPGKREAKQTVWSLADITRDREHQEDVFQELQHAIEYLDHAPC 250

Query: 332 PFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390
            FF V S GNL Y N +      +   +      G   L     +S + A     +    
Sbjct: 251 GFFSVDSAGNLVYVNATLANWLDHDLAEI-----GSGGLKLGDIVSGDGAALLTSIVPEP 305

Query: 391 RTCIAASARLHTIQWNRENS-LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449
                    +     + +   + +       A+  P       I     +    +R  EI
Sbjct: 306 GEVKTEVFDIDLKMRSGKTMPVRLYHKLAFGADGAPGASRTLVISRARDERLDPQRAAEI 365

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG-YPVEDILRKPFTVFLEQNTPSV 508
             M+     + T   IA +++ G ++  N   +KL           +     +     + 
Sbjct: 366 RFMRF---FDHTPMAIATVDKAGAVVRANARFAKLAQSLDPSGGAARSILAAVSTRDRAT 422

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT-MHDISEWKQE 567
           +   + +  +           +    +E+     +        +  ++  + + +E +  
Sbjct: 423 LGAAIDQA-AQGQADIAPVEVMLDGAKERWGQFFVTAVADDGDAEAAIVYLLETTERRAL 481

Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
           +N+++ A+K+              ++H+    L+AI+  ++ + N       +P + +  
Sbjct: 482 ENQVNQAQKMDT-----IGQLAGGIAHDFNNVLSAIMMANDFLLNAH--KPTDPSFQDIM 534

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
             I ++      +V  LL  S+    K  L  + + L EA+++   L++    EK + + 
Sbjct: 535 Q-IKQNATRAATLVRQLLAFSR----KQTLRPQVLDLGEALTDIDRLLKRLIGEK-VSLE 588

Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT--------------HTS 733
                ++ R+ AD+   +Q+ +N+  NA    P GG++ I T+                +
Sbjct: 589 MQHGRDLWRVKADVSQFEQVIVNLAVNARDAMPDGGKLAIRTSNVPAAEAAQLAHKGMPA 648

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
            + V + V DTG G+    ++K  +PF     S +  G+GTGLGL     ++    G  Y
Sbjct: 649 ADYVRIDVSDTGTGIPADIVDKIFEPFF----STKEVGKGTGLGLSTVYGIIKQTGGFVY 704

Query: 794 IFSTPAKGTLIEIIFPLYDT 813
           + S P KGT   I  P +D 
Sbjct: 705 VDSEPGKGTTFHIFLPRHDA 724



 Score = 58.1 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 47/379 (12%), Positives = 104/379 (27%), Gaps = 22/379 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL--KRQNTWYGK 146
            DA G++   +       G  A  M  +R  +   I + D +  +  LL   R+     +
Sbjct: 128 TDARGHVVYANPVYLALTG--AATMQDVRPVERVFIGNPDVSEAVFRLLKAAREGKRLQE 185

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                         + +   P+    RE      + +  + R       + + L     +
Sbjct: 186 EVRVAGADGAQGRWMRMRVRPLGPGKREAKQTV-WSLADITRDREHQEDVFQELQHAIEY 244

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPP-----PHLRMKNKVSSLTEYYAHKDDVLKTE--KY 259
           L     G  SV+     ++   +           + +    L +  +     L T     
Sbjct: 245 LDHAPCGFFSVDSAGNLVYVNATLANWLDHDLAEIGSGGLKLGDIVSGDGAALLTSIVPE 304

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
           P     E    + +      +      +           S   +  R            E
Sbjct: 305 PGEVKTEVFDIDLKMRSGKTMPVRLYHKLAFGADGAPGASRTLVISRARDERLDPQRAAE 364

Query: 320 NLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
                  D  P+    V   G +  AN  F  L        ++ +GG +  + A   + +
Sbjct: 365 IRFMRFFDHTPMAIATVDKAGAVVRANARFAKL-----AQSLDPSGGAARSILAAVSTRD 419

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
            A     + ++ +    A      +  +        F     A+   +         E  
Sbjct: 420 RATLGAAIDQAAQGQ--ADIAPVEVMLDGAKERWGQFFVTAVAD-DGDAEAAIVYLLETT 476

Query: 439 DTRINKRKMEIEVMQLCSI 457
           + R  + ++  +  ++ +I
Sbjct: 477 ERRALENQV-NQAQKMDTI 494


>gi|54294995|ref|YP_127410.1| sensor histidine kinase [Legionella pneumophila str. Lens]
 gi|53754827|emb|CAH16314.1| sensor histidine kinase [Legionella pneumophila str. Lens]
          Length = 816

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 85/409 (20%), Positives = 157/409 (38%), Gaps = 56/409 (13%)

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV----- 508
             SI ++  D   +++R+  I+  + A  +      + IL K        N         
Sbjct: 12  FKSIFDSLPDLYLLLDRDFNIVGVSDAYLQATMVSRKQILGKNVFDAFPDNPNDPKATGA 71

Query: 509 --MNHYLTEILSLDLRQTLEK----ITLGSTKEEKLLSLRIII------KKLPFSSCYSL 556
             +   L  +L      T+      I   + +                            
Sbjct: 72  KNLYASLLRVLKNKSADTMAIQKYDIQRPADQGGGFEERYWSPINTPVLGADQEVEYIIH 131

Query: 557 TMHDISEWK---------------------QEKNKLSHAKKIAEKESSH----------- 584
            + D++E+                      + + ++    +  ++ +             
Sbjct: 132 RVEDVTEFVHLKKTGSAQLKLMEELRTKAGEMEIEIYQRAQEIQEANKQLEEANKNLARL 191

Query: 585 ---KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
              K+ F A VSHE+RTPL  I+G  E++  ++  P           +I  +  ++L  V
Sbjct: 192 DQIKTQFFANVSHELRTPLMLILGPLEMLLAEKKLPSF---VQNTLRHIQNNAQILLKHV 248

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701
           NDLL+ISK+++GKM LH+  + L + + + I+L +    E++++      + + +   D 
Sbjct: 249 NDLLNISKLDAGKMILHYANIDLVKLIQQTIALFEAQIPERKLVFSMDLPDEL-QAQIDP 307

Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761
             ++ + +NILSNAI FTP   ++ I     + E   L++ D G G+ +   E   + F 
Sbjct: 308 DKMQHVLINILSNAIKFTPQNAKVRIRLVQINPETCRLQIEDNGPGIPSDLCETIFERFF 367

Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           QI         GTGLGL +AK  V+ + G          G +  I  PL
Sbjct: 368 QIEEPTTRTVGGTGLGLSIAKDFVELHGGSILAGDARNGGAIFTIELPL 416



 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 96/232 (41%), Gaps = 12/232 (5%)

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
           +K       F+   SH+++ PL A+      I  +  G + + +  +Y   + +  + + 
Sbjct: 587 KKAEDELDQFVYHASHDLKAPLPAMEHLISWI-EEDLGEMLSEQSKKYLLLLRQRASRMS 645

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
            +++ LL  +  +SG +      +  D  +++ I  +          +     + +P + 
Sbjct: 646 KLLDGLLKYA--QSGYVFDKVRTIHTDRLITDIIKKLNP-----PQTVTFQLEDTLPVLN 698

Query: 699 ADLRSVKQIALNILSNAIHFTP-SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757
                ++++   +L N+I       G III T    +      V D G G+     ++  
Sbjct: 699 TCELPLREVFTALLDNSIRHHHSKDGHIIIGTK-EKDRFYEFFVADDGPGIEKKYQDRIF 757

Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           + F  +    ++    +G+GL +AK +V+   GK  + S   KG++   ++P
Sbjct: 758 QLFQTLQPRDKLET--SGVGLSIAKKIVEFQGGKISVESEKNKGSVFRFLWP 807


>gi|84387561|ref|ZP_00990579.1| hypothetical protein V12B01_11270 [Vibrio splendidus 12B01]
 gi|84377609|gb|EAP94474.1| hypothetical protein V12B01_11270 [Vibrio splendidus 12B01]
          Length = 863

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 82/248 (33%), Positives = 124/248 (50%), Gaps = 10/248 (4%)

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           Q   +L  AK+ A   +  KS FLA +SHEIRTPL  IIG +E++   +          E
Sbjct: 352 QHNKELVEAKEDAISANKAKSAFLANMSHEIRTPLNGIIGMAEILSQSQLSAN----QQE 407

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
               I+ S + +L ++ND+LD+SKIESG + L      L EAV +++S++   A  K I 
Sbjct: 408 VLGDIESSSHSLLVLLNDILDLSKIESGNLMLSPHNADLREAVYDSVSVILSKAISKDIE 467

Query: 686 IRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS----NEEVILR 740
           +  +  +   P++  D   V+Q+  N+LSNAI FT  G  I     +T       ++   
Sbjct: 468 LDINIDSQTPPQLFFDEYRVRQVLTNLLSNAIKFTSKG-TITTDIAYTPMSLGRGKLECS 526

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V DTG+G+   +LE   +PF Q   S   +  GTGLGL + + +VD   G     S   +
Sbjct: 527 VSDTGIGIEPEKLESIFEPFTQEDGSITRQFGGTGLGLAICRQLVDLMGGYITARSVKGE 586

Query: 801 GTLIEIIF 808
           G+      
Sbjct: 587 GSTFTFCL 594


>gi|262276590|ref|ZP_06054399.1| phosphate regulon sensor protein phoR [Grimontia hollisae CIP
           101886]
 gi|262220398|gb|EEY71714.1| phosphate regulon sensor protein phoR [Grimontia hollisae CIP
           101886]
          Length = 431

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 66/366 (18%), Positives = 148/366 (40%), Gaps = 31/366 (8%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           +++   + +  +  E+  D + +   +G I+  N+   +L G+ + D   +     +   
Sbjct: 91  KELTNLIRRFRNGAESLPDAVVVFEHDGSIVWCNKLAQELLGFRMPDDAGQYIANLIR-- 148

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564
                  YL      +  +    +    T E + +              Y + + DI++ 
Sbjct: 149 -TPEFIEYLGRAELGEPFEMRSTLHASKTLEFRTMPY--------AEGEYLMVVRDITQL 199

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           KQ +                + +F A VSHE+RTP+T + G+ E+  ++    L  P + 
Sbjct: 200 KQLEG--------------MRRNFFANVSHELRTPMTVLRGYLEM--SEDPDMLAGPMWN 243

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESG-KMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
           +    +      +  +V  LL +SKIE+  K+ L  + V +   +       +  + +K 
Sbjct: 244 KAHGVMTEQLTRMESLVEQLLTLSKIEASVKIALD-QKVDVPAMLDVLEKEARTLSGDKA 302

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
                   +++ ++L D   ++    N++ NA+  TP+  +I +    +      L V D
Sbjct: 303 HDFEFDIDHSL-KVLGDEDQLRSAISNLVYNAVKHTPASAKIKVRWFKSRKG-PRLEVID 360

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           +G G+    +++  + F ++  ++     G+GLGL + K  ++ +  +  I S   +G+ 
Sbjct: 361 SGEGIAPQHIDRLTERFYRVDKARSRETGGSGLGLAIVKHALNHHESELEINSKVGEGST 420

Query: 804 IEIIFP 809
                P
Sbjct: 421 FSFTLP 426


>gi|167644627|ref|YP_001682290.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp.
           K31]
 gi|167347057|gb|ABZ69792.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp.
           K31]
          Length = 570

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 71/259 (27%), Positives = 125/259 (48%), Gaps = 7/259 (2%)

Query: 552 SCYSLTMHDISEWKQEKN-KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
           +  +  + D     +     L  A+  A++ +  KS FLA +SHE+RTP+  ++G +  +
Sbjct: 166 AGLAAYVLDAMRLVRASALALEKAQIEAQEANRAKSAFLAMMSHELRTPMNGVLGMAHAL 225

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
            + +     + R  +Y   I +SG+ ++ I+ND+LD+SKIE+ K+     P  +     +
Sbjct: 226 GSTQL----DARQADYVETIVQSGDGLMAILNDILDLSKIEARKLEFEITPFDIRALGRQ 281

Query: 671 AISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
              +    A  K + +    A   P  +  D   V+QI LN++SNA+ FT  G ++ +  
Sbjct: 282 LQRVWSETARRKGLSLTLDVAPETPQWLAGDPARVRQILLNLVSNALKFTEEG-RVALRI 340

Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
              +   V + V DTG GM+  +  K   PF Q   S   R  GTGLGL + + + +   
Sbjct: 341 APHAAGGVEITVSDTGAGMSPEQQAKLFTPFVQGDASIARRFGGTGLGLSICRELAEMMG 400

Query: 790 GKFYIFSTPAKGTLIEIIF 808
           G+    S P +G+   ++ 
Sbjct: 401 GRVTADSRPGEGSTFTVVL 419


>gi|52550550|gb|AAU84399.1| two-component hybrid sensor and regulator [uncultured archaeon
           GZfos9E5]
          Length = 424

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 78/248 (31%), Positives = 136/248 (54%), Gaps = 4/248 (1%)

Query: 563 EWKQEK-NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           E K  +  K        E+ +  K+DFL+  SHE+RTPLT +    ++++    G L + 
Sbjct: 166 ETKNAELKKAMEHMADLEEVTRMKTDFLSITSHELRTPLTPMKSQLQMLQEGYMGKL-DK 224

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
           +  +    + R+   + +++ D+LD+S+IE+G++ L F+ ++L++AV EAI + + +A  
Sbjct: 225 KQEKSIEVVLRNLTRLENLIGDILDLSRIEAGRIKLSFDSMNLNDAVKEAIKMQEAFAKG 284

Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
           K I I    A  +P I+ D   ++Q   N+L+NAI F+   G++II T     + V   +
Sbjct: 285 KNIEISAKLAE-MPNIIGDAERLRQAIGNLLNNAIKFSEKTGKVIIETK-RLGKNVQFSI 342

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            D G+G++  + +K  KPF QI +S      GTGLGL + K ++ A+ GK +  S   KG
Sbjct: 343 TDYGIGISKADQKKLFKPFTQIDSSMGREHVGTGLGLAITKGIIQAHNGKIWAESELGKG 402

Query: 802 TLIEIIFP 809
           +    + P
Sbjct: 403 STFYFVIP 410


>gi|332702373|ref|ZP_08422461.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332552522|gb|EGJ49566.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 659

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 82/436 (18%), Positives = 165/436 (37%), Gaps = 30/436 (6%)

Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
             +D  C                        + K      +   +         ++ +R+
Sbjct: 235 RNTDLPCWHFDQTAQAPDDGERLHTCAKCNFYRKRPGDEVSQLADSFRNMVWSIKLYRRR 294

Query: 447 MEIEVMQLCSILEATSDGIAIINREGI-ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           +     +  S+  +  D + +++   + IL  N    +L+GY   ++    F + L+ + 
Sbjct: 295 LRESEEKYRSLFVSGPDPVFVVDHHDVSILDANPRAEELYGYSKGELQGMNF-MDLDPDF 353

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLG-STKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564
            S    Y   +        L KI      ++   ++L              + + DI+E 
Sbjct: 354 NSQCRPYFDTLGEEKSCVYLTKIMHFKRGRQPFYVNLHACPISYKGRHAVIIAVTDITEM 413

Query: 565 KQEKNKLSHAKKIAEKESSHKS--DFLARVSHEIRTPLTAIIGFSEVI--KNQRFGPLGN 620
            ++  +L        + S  K+  +  A ++HE+  PL AI   S+ +   +++   +  
Sbjct: 414 IEKDAQL-------IQASKMKTLGEMSAGIAHELNQPLNAIKMGSDFLSMMSEQGREIPT 466

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
               +    I    +   +I+N L    +    K +   E + ++ ++   +++V     
Sbjct: 467 ENMHQVTVEISAQVDRATEIINTLRAFGR----KAHFVKELLDVNRSIRGVMNIVGQQFK 522

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT-------PSGGQIIISTTHTS 733
              + +    A N+P ILA    ++Q+  N++SNA           P  G+I+I T+   
Sbjct: 523 LSNVDVELDLAENLPTILAHDNRLQQVLFNLVSNARDAILDRGDRVPGDGKIVIRTS-AD 581

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
           N  V + V DTGVG+   +L K  +PF          G+G GLGL ++  +V    G   
Sbjct: 582 NGSVTVSVSDTGVGIAEDDLHKVFEPFFTTKEL----GQGMGLGLSISYGIVKDYNGDIR 637

Query: 794 IFSTPAKGTLIEIIFP 809
           I S   +G+   + FP
Sbjct: 638 IRSRKGEGSTFTLTFP 653



 Score = 42.3 bits (98), Expect = 0.33,   Method: Composition-based stats.
 Identities = 36/274 (13%), Positives = 75/274 (27%), Gaps = 19/274 (6%)

Query: 76  FDPIPRTVRFTWNIDAHGY-LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG 134
           F   P      + +D H   + + +    +  G    ++ GM   D+    +     +  
Sbjct: 306 FVSGPDP---VFVVDHHDVSILDANPRAEELYGYSKGELQGMNFMDLDPDFNSQCRPYF- 361

Query: 135 DLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI-VHVNRVDNDP 193
           D L  + +    T +   +       ++L A PI      + G     I V       + 
Sbjct: 362 DTLGEEKSCVYLTKIMHFKRGRQPFYVNLHACPI-----SYKGRHAVIIAVTDITEMIEK 416

Query: 194 RALG------KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247
            A        K L +  + +        +  K   D  S  S          +  +T   
Sbjct: 417 DAQLIQASKMKTLGEMSAGIAHELNQPLNAIKMGSDFLSMMSEQGREIPTENMHQVTVEI 476

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
           + + D        L      +    ++   +N +        G     S    E     N
Sbjct: 477 SAQVDRATEIINTLRAFGRKA-HFVKELLDVNRSIRGVMNIVGQQFKLSNVDVELDLAEN 535

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNL 341
            P++ A+ +  + +    V              +
Sbjct: 536 LPTILAHDNRLQQVLFNLVSNARDAIL-DRGDRV 568


>gi|317154358|ref|YP_004122406.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316944609|gb|ADU63660.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 599

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 91/397 (22%), Positives = 165/397 (41%), Gaps = 32/397 (8%)

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDI--LRKPFTV 499
            + ++  E  +L +  E    G    + + G I+  N   +++ GY  +        +  
Sbjct: 78  EEIELGAERYRLSA--EGAHIGTWDWDIKTGDIVF-NEEFARMLGYEFDAFPPFYASWEA 134

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR-----IIIKKLPFSSCY 554
            +  +    +   LT+ L     +         T + +   +          ++      
Sbjct: 135 LVHPDDKPGVLAALTDHLKGRTEE-FTSEYRVLTADNRWKWILDKGRVFKWDEVGKPRRA 193

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                D++E +  +  L  AK++AE  +  K+ FLA +SHEIRTPL  I+G   ++++  
Sbjct: 194 LGVHIDLTEQRAAEEALESAKEVAESANIAKTQFLANMSHEIRTPLNGILGMLRLLRDHD 253

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
             P       EY    + SG  +L I+ND+L +S+IE+  +++  E ++L       + +
Sbjct: 254 LPP----EQAEYVTTAETSGRNLLAILNDVLSLSQIEANAVHVCQEGLNLPLLADAVLRV 309

Query: 675 VQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
            +   +   + +  +    IP  + AD   ++QI  N++ NA+ FT +G  + I  T   
Sbjct: 310 FKAQIDNSGVELGFTIDPTIPHDLCADQGKLRQILFNLVGNALKFTRNGS-VRIDITAAD 368

Query: 734 NEE------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
           +        +I  V DTG+G+   +L     PF Q   S   +  G GLGLP+   +V  
Sbjct: 369 DRRHPGDIILIFAVEDTGIGIAQDQLVSVFAPFTQADGSYARKYGGAGLGLPIVSRLVSL 428

Query: 788 NMGKFYIFSTPAKGTLIEII--------FPLYDTSHP 816
             G   I S P +GTL+            P Y    P
Sbjct: 429 LGGSVCIDSQPGQGTLVVFSVAARADHGLPAYAAERP 465


>gi|299529743|ref|ZP_07043178.1| periplasmic sensor hybrid histidine kinase [Comamonas testosteroni
           S44]
 gi|298722261|gb|EFI63183.1| periplasmic sensor hybrid histidine kinase [Comamonas testosteroni
           S44]
          Length = 943

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 107/620 (17%), Positives = 210/620 (33%), Gaps = 68/620 (10%)

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP-PHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
           D+        +  + S+E         ++   P        + LTE  A +   ++    
Sbjct: 126 DRADVKQASARIIYLSLEHSTAKRLGAETAARPSPVSPGTTAWLTEALAERAPAIEAGSR 185

Query: 260 PLLTSEESSLPEQED-FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
             +        E +  F    L+    +Q +  L+ +   S       +     A +D  
Sbjct: 186 APIVWLRPPTDEMDRIFLFTPLDAAHPEQTWIGLEVDGVASVIASECASDGGSYALYDTN 245

Query: 319 ENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
             +   T+   P+P           A          +                       
Sbjct: 246 SRI---TLHGGPLPMMGD-----TVATQLTQDSFGVQ--------------------GGT 277

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQ---WNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
              + ++L +S             ++       +S  M                ++    
Sbjct: 278 WFPENLVLVKSVGEAQWKLVYYVPMRDVLTRSAHSFWMAGGVAAVLAAIVLLAVRHIKRK 337

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILR 494
                      +   +     I+E    G++++ R +G +L +N A  +L          
Sbjct: 338 LVAPALRQYAALVDSLALNNKIIEVAPVGLSLVRRSDGRLLVSNDAARRLL--------- 388

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554
                    +        + +  +    +  E       ++ + + L             
Sbjct: 389 ---------DEHDSWREDIRQATTRAGSRECEL------RDGRSVILTFASMPYQSEDVV 433

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
              + DI+  K+ +  L  AK  A++ +  K+ F A +SHEIRTPL  I+G  E++    
Sbjct: 434 ICGISDITVQKEVERSLRSAKLAADQVNEAKTMFFATLSHEIRTPLYGIVGTMELLALTG 493

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                N +  +Y N I +S   +L  +ND LD+S+IE+G+  L+   VS  E +   ++ 
Sbjct: 494 L----NVQQQQYLNTIQQSSATLLRTINDTLDLSRIEAGRQELYIAEVSPAELLERVVAN 549

Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHT 732
               A  K +LI       +P  + AD   + Q+  N++ NA+ FT +G   + +S  + 
Sbjct: 550 FAARAQGKGLLIYGLCDVGVPSSVRADSARILQVLNNLVGNAVKFTEAGRVAVRVSAENL 609

Query: 733 SNEEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
               +    +V DTGVG+      +  +P+ +   S +    G+GLGL + + + D   G
Sbjct: 610 QPGRIRLKFQVADTGVGIRAEAQAQLFEPYFRADASAKEDISGSGLGLAICRRLSDLMGG 669

Query: 791 KFYIFSTPAKGT--LIEIIF 808
              + S    GT     +  
Sbjct: 670 SLSVVSEKGLGTSITFAVTL 689


>gi|157369285|ref|YP_001477274.1| phosphate regulon sensor protein [Serratia proteamaculans 568]
 gi|157321049|gb|ABV40146.1| PAS/PAC sensor signal transduction histidine kinase [Serratia
           proteamaculans 568]
          Length = 438

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 68/416 (16%), Positives = 146/416 (35%), Gaps = 36/416 (8%)

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
            + L +         ++       G+       R  +R++ + + +  S  E+  D + +
Sbjct: 54  SHWLWVDRSMTPPPGRWSWEPLFYGLYQMQQRNRRRRRELALLIKRFRSGAESLPDAVVM 113

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
              EG I   N     L G+   +   +     L     S              +Q   +
Sbjct: 114 TTVEGNIFWCNGLAQHLLGFRWPEDNGQHILNLLRYPEFSHYL----------QQQEFTR 163

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
                   E  +  R++           +   D+++ +Q +                + +
Sbjct: 164 PLTLQLNNEHYVEFRVMPY---SEGQLLMVARDVTQMRQLEG--------------ARRN 206

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           F A VSHE+RTPLT + G+ E++ ++        +       +      +  +V  LL +
Sbjct: 207 FFANVSHELRTPLTVLQGYLEMMSDEELDGSLRGKA---LGTMQEQTRRMDGLVKQLLTL 263

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707
           S+IE+       E V +   +   +       +     I       + ++  +   ++  
Sbjct: 264 SRIEAAPNVEMNERVDI-PLMLRVLQREAQSLSGGNHEISFRVNEQL-KVFGNDDQLRSA 321

Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
             N++ NA++ TP G  I +S   T N     +V D G G+    + +  + F ++  ++
Sbjct: 322 VSNLVYNAVNHTPKGTNIEVSWQQTPNG-AQFQVSDNGPGIAAEHIPRLTERFYRVDKAR 380

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP---LYDTSHPHDCI 820
             +  G+GLGL + K  +  +  +  I S    GT      P   +   +   + +
Sbjct: 381 SRQTGGSGLGLAIVKHALSHHDARLEILSEQGIGTRFIFTLPNRLIVPAALSENAV 436


>gi|77359607|ref|YP_339182.1| sensory transduction histidine kinase [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76874518|emb|CAI85739.1| conserved protein of unknown function ; putative sensory
           transduction histidine kinase [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 893

 Score =  281 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 75/243 (30%), Positives = 136/243 (55%), Gaps = 12/243 (4%)

Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
            AE+ +  KS FLA +SHEIRTPLTAI+GF+E +       + N +   + + I R+   
Sbjct: 405 QAEQANQLKSRFLANMSHEIRTPLTAIMGFTEQLL--HNDKITNNKQ--HLSTILRNSKH 460

Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP- 695
           +L+++N++LD+SKIE+ K+ +   P+++   + +  S+++  A +K++ +  ++   +P 
Sbjct: 461 LLELINNILDLSKIEAEKIAVEQAPLNVVRLMHDIESIIEPLAQQKKLKLSINYQLPLPH 520

Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755
            I +D   +KQI +NI SNA+ FT  G  + I+  +  ++E++  ++D+G+GM   ++++
Sbjct: 521 TINSDETRLKQILINIASNAVKFTEQG-HVSITVHYLPSQELMFVIQDSGIGMVESQIKR 579

Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF------P 809
              PF Q   +   R  GTGLGL ++K +     G   + S    G+   I        P
Sbjct: 580 LFTPFEQADATTTRRFGGTGLGLCISKNLAQRLGGDITVKSELDVGSCFTITIACNLQTP 639

Query: 810 LYD 812
           L D
Sbjct: 640 LAD 642


>gi|7272187|gb|AAA23034.2| histidine protein kinase [Caulobacter crescentus CB15]
          Length = 597

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 104/357 (29%), Positives = 181/357 (50%), Gaps = 11/357 (3%)

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
           L ++L+        +  +G + +   A     G    D++ +  T          +   +
Sbjct: 206 LETLLDGLPHLAIAVRGQGQVTAVRGAAP--PGVTRADLVNRGLTGAAAPGDRQRLTAAI 263

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH 573
            +              LG     ++++L +        +     + DI+  +  ++ L  
Sbjct: 264 AQAHREGSASLTFNPALGVE---RVVALDMHRV---APNQLVGVLRDITVERHREHALDQ 317

Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
           A+  AE  ++ ++ FLA +SHE+RTPL AI+GFS++++ + FGPL + RY EYA  I  S
Sbjct: 318 ARIDAEALAAGRARFLANMSHELRTPLNAIMGFSDIMRARMFGPLSD-RYAEYAELIHES 376

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693
           G  +LD++ND+LD+SKIE+ +  L        EAV  A+ L+++ ++   + +R      
Sbjct: 377 GGHLLDLINDVLDMSKIEAERFELQRGVFDAREAVQAAMRLLRVQSDTAGVQLRGVLPPG 436

Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753
              + AD R++KQI LN++SNA+ FTP GGQ+ + T H  +  + + V DTGVG++  +L
Sbjct: 437 ELEVDADRRALKQIVLNLVSNALKFTPRGGQVTV-TAHGYDGVLEIVVADTGVGISPEDL 495

Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           E+  +P+ Q   ++Q    GTGLGL L +A      G+  I S    GT + +  P+
Sbjct: 496 ERLGRPYEQAGGAEQRA-RGTGLGLSLVRAFAQLLGGEMVIESRLGAGTTVSVRLPV 551


>gi|85711169|ref|ZP_01042229.1| Phosphate regulon sensor histidine kinase (contains PAS domain)
           [Idiomarina baltica OS145]
 gi|85695082|gb|EAQ33020.1| Phosphate regulon sensor histidine kinase (contains PAS domain)
           [Idiomarina baltica OS145]
          Length = 435

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 69/363 (19%), Positives = 143/363 (39%), Gaps = 30/363 (8%)

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
           +   + +     EA  D   +  R+G +L +N+     FG    D      +  +     
Sbjct: 93  LAQLLRRFREAAEALPDAAIVFRRDGSLLWSNQLAQFYFGLKWPDDAGMRLSNLIRHP-- 150

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQ 566
                + + +   +  + L   +         L + I +        Y L   D+++ KQ
Sbjct: 151 ----EFFSYLSKGNFEEALTIPSPARDS----LDIEIRVMPYSDDQ-YLLVARDVTQIKQ 201

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
                           + + DF+A VSHE++TPLT + G+ E++++    P       + 
Sbjct: 202 L--------------DNLRKDFVANVSHELKTPLTVLQGYLEMVEDPAMTP--PAMMTKA 245

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
              + R    +  +++ LL++S++E+   ++    V     + +  +  +  A  K I +
Sbjct: 246 VGEMQRQSERMRLLIDQLLELSRMETPSHDVFERVVDAPSLLQQLQTEAEKLAKTKSINV 305

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
               A    ++     +++    N+++NAI +   GG I ++       EV   V DTG 
Sbjct: 306 HFDVAP--VKVYGKEDALRSAMQNLITNAIRYNQEGGDIRVTWQMV-GSEVEFSVEDTGP 362

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+ +  L +  + F ++   +     GTGLGL + K  +  +  +  + S   KG+    
Sbjct: 363 GIASEHLPRLTERFYRVDKDRNSERGGTGLGLSIVKQALQHHNCELQVNSALGKGSRFWF 422

Query: 807 IFP 809
             P
Sbjct: 423 RLP 425


>gi|323136675|ref|ZP_08071756.1| integral membrane sensor signal transduction histidine kinase
           [Methylocystis sp. ATCC 49242]
 gi|322397992|gb|EFY00513.1| integral membrane sensor signal transduction histidine kinase
           [Methylocystis sp. ATCC 49242]
          Length = 511

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 102/249 (40%), Positives = 155/249 (62%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I+E +Q K     A++ AE+ +  KS FLA +SHE+RTPL AI+GFSEV+K + FGP  N
Sbjct: 239 ITELEQAKANSDEARRRAEEANLAKSRFLATMSHELRTPLNAILGFSEVLKGELFGPHAN 298

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
           P Y +Y+N I  SG  +L ++N++LD+S++E+G+  L  E VSL     E   L+ + A 
Sbjct: 299 PAYRDYSNDIHSSGQHLLMLINEILDLSRVEAGRYELKEESVSLVGVAQECRHLLTIRAQ 358

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
           ++ I +      ++PRI AD R+V+Q+ LN+L+NAI FTP GGQ+ I    TS     + 
Sbjct: 359 KRDIRMIEVVEPSLPRIWADERAVRQVILNLLTNAIKFTPQGGQVTIKVGWTSAGGQYIA 418

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           ++D G G+   E+   M  FG+   +Q+   EGTGLGLP+ K +V+ + G+F + S   +
Sbjct: 419 IKDNGPGIPEDEIAVVMSSFGRGMLAQKNADEGTGLGLPIVKGLVELHGGQFVLKSKVRE 478

Query: 801 GTLIEIIFP 809
           GT   ++FP
Sbjct: 479 GTDAIVVFP 487


>gi|317969046|ref|ZP_07970436.1| multi-sensor signal transduction histidine kinase [Synechococcus
           sp. CB0205]
          Length = 670

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 79/447 (17%), Positives = 175/447 (39%), Gaps = 42/447 (9%)

Query: 393 CIAASARLHTIQ-WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV 451
                  L  ++     +  A   +P         +   +     +     N  ++    
Sbjct: 221 TQPVKELLRGVRSIAGGDFEARIALPVGGELGELLDGFNDMASQLEAYNEANIEELTAAQ 280

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
           ++  S++   +DG  +++ EG ++  N    +LF +   ++        L +     +  
Sbjct: 281 VKQQSLIATMADGALLLDSEGRVVLVNPTARRLFRWEGRNLEGTRLMDELPEGLNLELQT 340

Query: 512 YLTEILSLDLRQTLEKITLGSTKEE-KLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570
            L  +L  D   +  + + G      +++   +           ++T+ D++        
Sbjct: 341 PLESLLENDKESSDVRCSFGEPPRTLRIVLQSVRDASGETLKGIAVTVQDLTR------- 393

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
                    + ++ +S F++ VSHE+RTPL  I  + E + +     L      ++    
Sbjct: 394 -------EVELNAAQSRFISNVSHELRTPLFNIKSYVETLHD-MGEQLSEEDRRDFLAIA 445

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
           +   + +  +VND+LD+S++ES +     E V L  A+ + +   +L A EK + +    
Sbjct: 446 NAETDRLTRLVNDVLDLSRLESDR-AWSMEAVELGPAMEQTLRNYKLNAKEKGVELDLHV 504

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII-------------STTHTSNE-- 735
            + +PR+  +   + Q+  N++ N + FT +GG++ +             ST    +   
Sbjct: 505 TDELPRVRGNWDLLLQVLDNLVGNGLKFTAAGGRLSLRAYPWPDICTIDPSTAANPDNPA 564

Query: 736 --------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
                   ++ + + DTG G++  + EK    F ++ N+      GTGLGL + + +++ 
Sbjct: 565 CELTAPLPKLRVEISDTGSGISREDQEKIFDRFYRVENAVHTEV-GTGLGLSIVRGILEK 623

Query: 788 NMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           +     + S    GT      PL D  
Sbjct: 624 HGATVRMVSELNVGTTFWFDLPLEDAD 650


>gi|304406284|ref|ZP_07387941.1| integral membrane sensor hybrid histidine kinase [Paenibacillus
           curdlanolyticus YK9]
 gi|304344868|gb|EFM10705.1| integral membrane sensor hybrid histidine kinase [Paenibacillus
           curdlanolyticus YK9]
          Length = 791

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 81/248 (32%), Positives = 127/248 (51%), Gaps = 7/248 (2%)

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           K+   +L  A   A K +  KS FLA +SHE+RTPL AIIG+SE+   +    LG   ++
Sbjct: 278 KERTAQLEQAHDEAIKANMIKSQFLANMSHELRTPLNAIIGYSEM-LAEEAEELGEQIFV 336

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           E    I  +G  +L ++ND+LDISKIE+GKM +H E   L   + + I+ V+   ++   
Sbjct: 337 EDLGKIRNAGKHLLTLINDILDISKIEAGKMEIHMETFELSGLIQDVITTVKPLIDKNGN 396

Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILRV 741
            +             D+  ++QI +N+LSNA  FT   G I +       +       RV
Sbjct: 397 KL--DXXXXXXXXXTDITKLRQILINLLSNASKFT-QNGTISLEVNREPRKGRTGYCFRV 453

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
           +DTG+GM+  ++EK  +PF Q  +S   +  GTGLGL ++ +  +   G   + S    G
Sbjct: 454 KDTGIGMSPEQVEKLFQPFMQADSSTTRKYGGTGLGLAISHSFSELMDGSIQVESEMGAG 513

Query: 802 TLIEIIFP 809
           ++     P
Sbjct: 514 SIFTCWLP 521


>gi|332305741|ref|YP_004433592.1| integral membrane sensor hybrid histidine kinase [Glaciecola
           agarilytica 4H-3-7+YE-5]
 gi|332173070|gb|AEE22324.1| integral membrane sensor hybrid histidine kinase [Glaciecola
           agarilytica 4H-3-7+YE-5]
          Length = 911

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 87/294 (29%), Positives = 141/294 (47%), Gaps = 23/294 (7%)

Query: 538 LLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
           +++  + +  L   +  ++    +    +    L+ AK  A+K +  KS FLA +SHEIR
Sbjct: 497 IVAFSMTLILLMN-NRQAVLSRKVEIRTRA---LALAKHEADKANKAKSQFLANMSHEIR 552

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TPL AIIGFS++ K           +  Y + I  S + +L I+ND+LDISKIES K+ L
Sbjct: 553 TPLNAIIGFSQLAKRSN----DLAEHQSYIHKISSSSDTLLAIINDILDISKIESEKLVL 608

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR---ILADLRSVKQIALNILSN 714
                 L + ++ A ++ +  A+ K +    +  +N+P       D   ++QI +N+ SN
Sbjct: 609 EEMEFDLHDILNRASTMFEPGASIKNV--DWALEDNLPAGLFFKGDPLRIEQIVINLCSN 666

Query: 715 AIHFTPSGGQIIISTTHTSN-------EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
           AI FT  G  ++ +T    N         + + V+DTG+G+T  +     + F Q   S 
Sbjct: 667 AIKFTQQGRIVLHATLLEHNKNESPPTARIQITVKDTGIGITPAQQGNLFRAFSQADTST 726

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI--EIIFP-LYDTSHPHD 818
             R  GTGLGL ++  +     G   I S    G+     I  P L + S P +
Sbjct: 727 TRRFGGTGLGLAISNELTQLMQGSLTIESEEGVGSEFTLTITLPTLANLSTPRE 780


>gi|3320466|gb|AAC82662.1| RcsC [Proteus mirabilis]
          Length = 507

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 78/267 (29%), Positives = 131/267 (49%), Gaps = 7/267 (2%)

Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
            +          + DIS   + +  L +    AE+ +  KS FLA VSHE+RTPL  IIG
Sbjct: 2   SRYQNEDVAICVLVDISARVKMERSLQNMATAAEQANQAKSMFLATVSHELRTPLYGIIG 61

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
             E+++        N         +D S +L+L I++D+LD SKIES ++ +  +P +  
Sbjct: 62  NLELLQ----SLTQNEETARLLKTMDNSSSLLLKIISDILDFSKIESKQLKIDVKPFNCR 117

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQ 724
           + VS  IS       +K + I      ++P+I+  D   V+Q+  N+L+N+I FT +G  
Sbjct: 118 QVVSFVISNYLPLIAKKDLAIYCFIEPDVPKIVNNDPVRVQQVISNLLNNSIKFTTTG-C 176

Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
           I +   +     +   + DTG G+    L +  +PF Q+  + +   EGTGLGL + + +
Sbjct: 177 ITLHL-YRDEYYLYFDIHDTGRGINEKMLHQLFEPFFQVSQNTESASEGTGLGLAICEKL 235

Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPLY 811
           ++   G   + S    G+   +  PLY
Sbjct: 236 INLMDGDISVVSQENVGSRFTVRIPLY 262


>gi|298493114|ref|YP_003723291.1| CBS sensor hybrid histidine kinase ['Nostoc azollae' 0708]
 gi|298235032|gb|ADI66168.1| CBS sensor hybrid histidine kinase ['Nostoc azollae' 0708]
          Length = 1118

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 80/298 (26%), Positives = 147/298 (49%), Gaps = 18/298 (6%)

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
                 + +    +L     +L     + +   D++E +Q   +L+       + +  K 
Sbjct: 349 HELKVLSGD-SEFTLTTENSELLTEDLWLVLATDVTEQQQLFKELAAKNADLIQLNRLKD 407

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
           +FLA +SHE++TPLTA++G S ++ +Q+ G L N R   YA+ I +SG  ++ ++ND+LD
Sbjct: 408 EFLACISHELKTPLTAVLGLSRLLVDQQLGEL-NERQARYASLIHQSGRHLMSVINDILD 466

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE---------------KRILIRTSFA 691
           ++++E+G+M L   PV + E    A+S V+   N+               +      S  
Sbjct: 467 LTRMETGQMELTPSPVQIREVCDHALSEVKTLHNQPSKFIHSSRSESKHSQDHQFSLSIE 526

Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751
             + +I+AD   ++Q+ +++LSNA  FT + G+I +         +   V DTG+G+  +
Sbjct: 527 PGLEQIVADELRLRQMLVHLLSNAFKFTETSGEIGLRVNRWE-GWIAFTVWDTGIGIPEH 585

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +     + F Q+ N    + EGTGLGL L +A+   + G     S   KG+   ++ P
Sbjct: 586 QQHLIFQKFQQLENPLTRQFEGTGLGLVLTRALARLHGGDVSFLSQEGKGSQFTLLLP 643


>gi|160899371|ref|YP_001564953.1| Hpt sensor hybrid histidine kinase [Delftia acidovorans SPH-1]
 gi|160364955|gb|ABX36568.1| Hpt sensor hybrid histidine kinase [Delftia acidovorans SPH-1]
          Length = 976

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 96/366 (26%), Positives = 159/366 (43%), Gaps = 20/366 (5%)

Query: 455 CSILEATSDGIAIIN-REGIILSTNR---AVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
            +I+     G+ +++ +E  +L  N       +      E    +    FL         
Sbjct: 384 RTIIAMAPYGLGLLDFKEKKMLLENSMMYKYKESLVLDDESTGERLIEYFLRFYGEK--- 440

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT--MHDISEWKQEK 568
            YL            E +         +  L +I+ K  +     L     DI+  KQ +
Sbjct: 441 -YLDGKKPEYSPVVSEIVVSY---NGTIAELSVIMVKARYQGRRVLLCGFADITAHKQVQ 496

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
             L  A+K AE+ +  KS FLA +SHEIRTPL AI+G  E++         +        
Sbjct: 497 RNLEDARKAAEEANQEKSSFLAAMSHEIRTPLNAILGNLEILGRSSM----SEEQQTRLA 552

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I  S + +L ++ND+LD SKIESG+M++      L   + +  ++ +  A E  I    
Sbjct: 553 TISSSSHSLLTLLNDVLDFSKIESGQMSVELTSFDLKSVIRQVAAIYKPLAAESGIEFSL 612

Query: 689 SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747
              +++    + D   +KQI  N+LSN++ FT +G +I +  +  +  E+ ++V DTG+G
Sbjct: 613 ILDDSLKDGYIGDGERIKQILNNLLSNSLKFTKAG-KIDVFASDRA-GELKIKVSDTGIG 670

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           +   +       F Q  +       GTGLGL L + M     G+   FS P KG++ E+ 
Sbjct: 671 IHPSQHAFIFDAFKQAGSDIAAEFGGTGLGLTLCQRMAHLMGGEIRFFSVPGKGSIFELT 730

Query: 808 FPLYDT 813
            P Y  
Sbjct: 731 VPAYHA 736


>gi|254243036|ref|ZP_04936358.1| hypothetical protein PA2G_03824 [Pseudomonas aeruginosa 2192]
 gi|126196414|gb|EAZ60477.1| hypothetical protein PA2G_03824 [Pseudomonas aeruginosa 2192]
          Length = 595

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 90/558 (16%), Positives = 198/558 (35%), Gaps = 41/558 (7%)

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
                 ++    Q DF  +                       YL  + H          +
Sbjct: 72  RETPDGQALERSQNDFRRVLEQGRANTVDSAEQAALDGVRNAYLQLQAHTPALLEAPMAD 131

Query: 320 -NLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEI--AGGLSTLLDAPKLS 376
            +   E  +             L   +   L L      +      A  ++ LL    ++
Sbjct: 132 NDGFSEAFNGL----------RLRLQDLQQLALAGISEAETSARHRAYLVAGLLGLVGVA 181

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
                       + R                E    +T  P     +  +   + G+  E
Sbjct: 182 ILLIGFVTAHSIARRFGAPIETLARAADRIGEGDFDVTL-PMTNVAEVGQLTRRFGLMAE 240

Query: 437 DVD--TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
            +    + +  ++     +L ++L++  DG+ I + +G I   N    +      +   +
Sbjct: 241 ALRQYRKTSVEEVLSGERRLQAVLDSIDDGLVIFDNQGRIEHANPVAIRQLFVSNDPHGK 300

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-- 552
           +   +  + +    +   L   +  +    L    +    E +LL+  +     P     
Sbjct: 301 RIDEILSDVDVQEAVEKALLGEVQDEAMPDL---VVDVAGESRLLAWSLYPVTHPGGHSV 357

Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
              L + D++E +  +                +S+F+ R SHE+RTP+T +   +  +  
Sbjct: 358 GAVLVVRDVTEQRAFE--------------RVRSEFVLRASHELRTPVTGMQ-MAFSLLR 402

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
           +R       R  +    +D   + ++ ++NDLL+ S+ ++G   L      L + +++A 
Sbjct: 403 ERLDFPAESREADLIQTVDEEMSRLVLLINDLLNFSRYQTGMQKLELASCDLVDLLTQAQ 462

Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
                    +R+ ++    + +PR+  D   ++++  N+L NA+  +  GGQI +     
Sbjct: 463 QRFIPKGEARRVSLQLELGDELPRLQLDRLQIERVIDNLLENALRHSSEGGQIHLQ-ARR 521

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
             + V++ V D G G+   +  +  +PF Q+      +  G GLGL L K ++  + G+ 
Sbjct: 522 QGDRVLIAVEDNGEGIPFSQQGRIFEPFVQV----GRKKGGAGLGLALCKEIIQLHGGRI 577

Query: 793 YIFSTPAKGTLIEIIFPL 810
            + S P +G    ++ P+
Sbjct: 578 AVRSQPGQGARFYMLLPV 595


>gi|328470858|gb|EGF41769.1| putative sensor histidine kinase [Vibrio parahaemolyticus 10329]
          Length = 785

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 75/277 (27%), Positives = 132/277 (47%), Gaps = 8/277 (2%)

Query: 537 KLLSLRIIIKKLPFSSCYSLTMH-DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
           +   L + +  +     +   +   +   KQ  ++L      AE+ +  KS FLA +SHE
Sbjct: 221 RFTWLFVFVAVMLLVGSFLYQLQYRMHNLKQLNSELEAETDKAERAAKAKSSFLAAMSHE 280

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
           +RTP+  ++G S++I  +   P+      E+   I  SG  ++ I+ND+LD SK+E  K+
Sbjct: 281 LRTPMNGVLGISQLIAEETKEPVT----KEHIKVILDSGQHLMTILNDILDFSKVEENKL 336

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILADLRSVKQIALNILSN 714
            L   P  L++ ++   S +Q   +EK I +       N      D   ++QI  N+  N
Sbjct: 337 ELEEAPFHLEQVLTPVCSAIQPLIDEKSIELIVENDVPNNTEFTGDCARLRQILFNLAGN 396

Query: 715 AIHFTPSGGQIIISTTHT-SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
           A+ FT  G  ++I T     ++++++ V DTG+G+   +  +    F Q  +S   R  G
Sbjct: 397 AVKFTNEG-HVLIRTELNGEDKQLLIIVSDTGIGIAPDKQGRVFNSFEQADSSTTRRFGG 455

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           TGLGL + K + +   G   + S    GT   +  P+
Sbjct: 456 TGLGLAIVKKLTELMGGSITLKSVEGVGTQFIVTLPI 492


>gi|125972809|ref|YP_001036719.1| GAF sensor hybrid histidine kinase [Clostridium thermocellum ATCC
           27405]
 gi|125713034|gb|ABN51526.1| GAF sensor hybrid histidine kinase [Clostridium thermocellum ATCC
           27405]
          Length = 1160

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 72/248 (29%), Positives = 127/248 (51%), Gaps = 3/248 (1%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           + ++   +L    +  EK + ++S+FLA +SHE+RTPL +II  S+++  ++     + +
Sbjct: 516 DLERTTRELRLRTEELEKVNKYRSEFLANMSHELRTPLNSIILLSKMLARKKINEF-DEK 574

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
            +E    I+++G  +L ++ND+LD+SK+ESGKMNL+       E + +   + +  A EK
Sbjct: 575 DMEKIEVINKAGQELLRLINDVLDLSKVESGKMNLNIFTFHSSELMEDLRQMFESSAKEK 634

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI-IISTTHTSNEEVILRV 741
            I      + N   ++ D   + QI  N LSNA  FT  G  I           ++I  V
Sbjct: 635 NISFFVEDSINS-MLVGDRDKISQILRNFLSNAFKFTSEGSVILKAEMDKDRENDLIFSV 693

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            DTG+G+    +    + F Q+  +   +  GTGLGL ++K + D   G+  + S   +G
Sbjct: 694 TDTGIGIPEEHISDIFQEFRQVDGTISRKYGGTGLGLSISKKLADLMKGEIEVRSKIGEG 753

Query: 802 TLIEIIFP 809
           +   +  P
Sbjct: 754 STFFLKLP 761


>gi|332527233|ref|ZP_08403301.1| multi-sensor hybrid histidine kinase [Rubrivivax benzoatilyticus JA2]
 gi|332111653|gb|EGJ11634.1| multi-sensor hybrid histidine kinase [Rubrivivax benzoatilyticus JA2]
          Length = 1233

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 95/766 (12%), Positives = 216/766 (28%), Gaps = 66/766 (8%)

Query: 86   TWNIDAHGYLKEISEELPKTIGNYAFKMIGMR--LCDVSDILHIDPNNHIGDLLKRQNTW 143
             W++D       ++    + +G  A                  +       D     +  
Sbjct: 327  LWDVDLVSNRVSVNARWHELLGLPATAGERDTAEWAARVHPEDLPGVVAQRDRHLEGHLP 386

Query: 144  YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
              +           ++ +      + +R       R  G +       + +   +R +++
Sbjct: 387  RFEALYRLRHEDGRWIWVLARGA-VTARGARGEPQRMTGTLLDVTERTEAQRALERSEQQ 445

Query: 204  FSHLHEIKKGHSSVEK----------EKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253
             +   +                        +    +     R  ++V  L +       +
Sbjct: 446  LAVTLQSLGDAVVATDRDSRVTRMNLAAERLSGWPAAEAAGRPLDEVLPLFD-QGRGHRI 504

Query: 254  LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS- 312
                   L   E   L       T +  +   +     ++         +      S   
Sbjct: 505  AGPVATVLARGEVVELANDTMLLTRDGRRLYIEDSAAPIRGRDGTIDGVVMVFRDVSERY 564

Query: 313  ---AYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
                   E E L     D  P P       G   +AN ++           +        
Sbjct: 565  EARRALRERERLLAGITDALPGPVARLDIEGRYLFANAAYRDWYGV-DPARLVGRPMREV 623

Query: 369  LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
            L        + A +   + R     +        +      + A+        N      
Sbjct: 624  L--GEAAHAHVAPQLARVRR--GETVRFEM---PLTTADGVARALFVTLVPDRNADGSMQ 676

Query: 429  PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
                +  +  D +  +        +  ++LE    G+ +   +  +   N    K FG  
Sbjct: 677  GHFVLVVDISDIKRAEDARRASERRARALLENLLIGVVVHEPDLSVREANATALKWFGAA 736

Query: 489  VEDILRKPFT----VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL-SLRI 543
                LR+         ++ +   +    L    +L   + +  + +G  ++ + +     
Sbjct: 737  DLAGLRRRIADGQPQLVDDDGTPLPPARLPVAQALREGRRVADLLVGLKQDGQPIRWALC 796

Query: 544  IIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                L           +T  DI+  +  + +    +    ++          ++H+    
Sbjct: 797  DAVPLGDERGGIEAVVVTFADITSRR--EAERLEQRLRDAQKLEAIGTLAGGIAHDFNNM 854

Query: 600  LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
            L  I+G     +              + +    +G   + +V  +L  S+ E+G+  L  
Sbjct: 855  LAGILGRLARAREDLQAGRPAE---GHLDEAVGAGLRAVALVRQILAFSRGETGQRELQP 911

Query: 660  EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719
                L+  + +  ++++       + + T         + D   ++Q+ +N+ +NA H  
Sbjct: 912  ----LEPVLRDTAAMLRAMVPA-GVRLETRLPPQPVGAVVDATQLQQVLMNLATNAWHAL 966

Query: 720  PS--GGQIII--------------STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
            P   GG+I I                   +     L VRD G G+      +   PF   
Sbjct: 967  PPDGGGRIEIGLEPLSAAAAAALQEPALAAGAAAHLWVRDNGCGIPEEIRGRLFDPFFTT 1026

Query: 764  PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
                   G+GTGLGL +   +V A+ G   + STP  G++  +  P
Sbjct: 1027 KP----VGKGTGLGLSVVHGIVAAHGGAIRVDSTPGAGSVFHVYLP 1068



 Score =  127 bits (320), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 51/438 (11%), Positives = 106/438 (24%), Gaps = 17/438 (3%)

Query: 141 NTWYGKTTLWPIEGTNLYVPIDLAALPIYSR--NREFSGFRGFGIVHVNRVDNDPRALGK 198
               G   L P           L  LP++       F       +    R   D R +  
Sbjct: 129 QPRAGLLHLLPPAADAQGAWRMLMLLPVHDGWLAASFDAGYARVVQQSVRYAPDMRTVLA 188

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
               +        +  ++V+  +      +     L    +    T     +  ++ + +
Sbjct: 189 HGGGRIVMAEPPMRDIAAVDLARAGGAFGRHRDSGLDTSVQQGPSTITGEQRMFLMASLR 248

Query: 259 YPLLTSEESSLPEQEDFHT---INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
            PL   E   L               + T              +            +   
Sbjct: 249 APLAPVEPPLLLTVSRSREQILAGWRRQTLLDTALFALAALLSTGAMALMHRRQRRALER 308

Query: 316 DEGENLTPETVDKCPIPFF--VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
           +  E      V          V    N    N  +  L    +          +  +   
Sbjct: 309 ERQEAERLGLVVSGADLVLWDVDLVSNRVSVNARWHELLGLPATAGERDTAEWAARVHPE 368

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
            L    A +       +       A       +      +            E     G 
Sbjct: 369 DLPGVVAQRD---RHLEGHLPRFEALYRLRHEDGRWIWVLARGAVTARGARGEPQRMTGT 425

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
             +  +    +R +E    QL   L++  D +   +R+  +   N A  +L G+P  +  
Sbjct: 426 LLDVTERTEAQRALERSEQQLAVTLQSLGDAVVATDRDSRVTRMNLAAERLSGWPAAEAA 485

Query: 494 RKPFTVFLEQNTP---SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
            +P    L          +   +  +L+      L   T+  T++ + L +      +  
Sbjct: 486 GRPLDEVLPLFDQGRGHRIAGPVATVLARGEVVELANDTMLLTRDGRRLYIEDSAAPIRG 545

Query: 551 S----SCYSLTMHDISEW 564
                    +   D+SE 
Sbjct: 546 RDGTIDGVVMVFRDVSER 563



 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 46/417 (11%), Positives = 115/417 (27%), Gaps = 16/417 (3%)

Query: 188 RVDNDPRALGKRLDKKFSHL--HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE 245
           R   +   LG  +      L   ++     SV    +++    +           + +  
Sbjct: 308 RERQEAERLGLVVSGADLVLWDVDLVSNRVSVNARWHELLGLPATAGERDTAEWAARVHP 367

Query: 246 YYAHK--DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303
                      +  +  L   E       ED   I +         G      + +   L
Sbjct: 368 EDLPGVVAQRDRHLEGHLPRFEALYRLRHEDGRWIWVLARGAVTARGARGEPQRMTGTLL 427

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEI 362
                       +  E     T+               +   N +   L+ + + +    
Sbjct: 428 DVTERTEAQRALERSEQQLAVTLQSLGDAVVATDRDSRVTRMNLAAERLSGWPAAEA-AG 486

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
                 L    +   +    PV    +    +  +     +  +    L +         
Sbjct: 487 RPLDEVLPLFDQGRGHRIAGPVATVLARGEVVELANDTMLLTRDGRR-LYIEDSAAPIRG 545

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
           +         +  +  +    +R +      L  I +A    +A ++ EG  L  N A  
Sbjct: 546 RDGTIDGVVMVFRDVSERYEARRALRERERLLAGITDALPGPVARLDIEGRYLFANAAYR 605

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
             +G     ++ +P    L +   + +   L  +      +T+      +T +    +L 
Sbjct: 606 DWYGVDPARLVGRPMREVLGEAAHAHVAPQLARVRRG---ETVRFEMPLTTADGVARALF 662

Query: 543 IIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
           + +     +      + + + DIS+ K+ ++    +++ A       +  +  V HE
Sbjct: 663 VTLVPDRNADGSMQGHFVLVVDISDIKRAEDARRASERRARALLE--NLLIGVVVHE 717


>gi|302340321|ref|YP_003805527.1| integral membrane sensor hybrid histidine kinase [Spirochaeta
           smaragdinae DSM 11293]
 gi|301637506|gb|ADK82933.1| integral membrane sensor hybrid histidine kinase [Spirochaeta
           smaragdinae DSM 11293]
          Length = 862

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 83/252 (32%), Positives = 138/252 (54%), Gaps = 10/252 (3%)

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            K+ + +L  AK  AE  +  K+ FLA +SHEIRTP+ AI+GF+E+++ +      +PR 
Sbjct: 355 RKRSERELRRAKNEAESANRTKTIFLANMSHEIRTPMNAILGFTEILEAEER----DPRR 410

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            +Y   I+ SG  +L I+NDLLD+SK+E+ K+ L  EP  +   + E   +    A +K 
Sbjct: 411 RKYIEAINSSGTTLLAIINDLLDLSKVEADKIVLKPEPTDITSLMEELRYIYAPLAEKKH 470

Query: 684 ILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNE----EV 737
           +++    A   P  +L D   ++QI +N++ NAI FT  GG +I+I+T   S E    ++
Sbjct: 471 LILDVEIATATPEALLIDRTRLRQILVNLVGNAIKFTTVGGVRIVINTWKQSEESTSVDL 530

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
            + V D+G G+   + E+    F Q   +   +  GTGLGL +++ +     G   + S+
Sbjct: 531 RIDVADSGPGIAVSDQERIFGIFEQGEVAWDRKYGGTGLGLAISRRLSTLMGGTISLTSS 590

Query: 798 PAKGTLIEIIFP 809
           P +G +  I  P
Sbjct: 591 PGEGAIFSIELP 602


>gi|238499603|ref|XP_002381036.1| two-component osmosensing histidine kinase (Bos1), putative
           [Aspergillus flavus NRRL3357]
 gi|220692789|gb|EED49135.1| two-component osmosensing histidine kinase (Bos1), putative
           [Aspergillus flavus NRRL3357]
          Length = 900

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 76/255 (29%), Positives = 128/255 (50%), Gaps = 12/255 (4%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           +S  +    + + A++ AE  +  KS+FLA +SHEIRTP+  IIG +++  +        
Sbjct: 278 VSNLRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDD---LK 334

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
           P   E  N +    N +L I++D+LDISKIE+ +M +   P ++   V  A+  + + AN
Sbjct: 335 PYTREMLNVVHNLANSLLTIIDDILDISKIEANRMVIESIPFTVRGTVFNALKTLAVKAN 394

Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV-- 737
           EK + +     N +P  +  D   ++QI LN++ NAI FT  G ++ ++   +  E+   
Sbjct: 395 EKFLSLTYQVDNTVPDYVTGDPFRLRQIILNLVGNAIKFTEHG-EVKLTIRKSDREQCAA 453

Query: 738 -----ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
                   V DTG+G+   +L+     F Q   S   R  GTGLGL ++K +V+   G  
Sbjct: 454 NEYAFEFSVSDTGIGIEEDKLDLIFDTFQQADGSTTRRFGGTGLGLSISKRLVNLMGGDV 513

Query: 793 YIFSTPAKGTLIEII 807
           ++ S    G+     
Sbjct: 514 WVTSEYGHGSTFHFT 528


>gi|224367481|ref|YP_002601644.1| putative aerobic respiration control sensor protein ArcB
           [Desulfobacterium autotrophicum HRM2]
 gi|223690197|gb|ACN13480.1| putative aerobic respiration control sensor protein ArcB
           [Desulfobacterium autotrophicum HRM2]
          Length = 549

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 83/397 (20%), Positives = 159/397 (40%), Gaps = 34/397 (8%)

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
             +    ++  ++    +   + E        +N  G  +  N A   L GY +E+++ K
Sbjct: 20  RIIALEKSEASLKENSSKFRRLYENFPLPSQSLNANGYFIEVNPAWLNLLGYSLEEVIGK 79

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555
           PF+ FL  +       +   +  +     +E   +   K+  L+ + +            
Sbjct: 80  PFSDFLHPDWKKHFKEHFPILKRIGEVLGVEFEMV--KKDGSLILVSLNGNISKDEYGKV 137

Query: 556 ----LTMHDISEWKQEKNKLSHAKKIAEKE--SSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                   DI+E KQ ++K+       ++             ++H+    L  I G++++
Sbjct: 138 QQTHCVFQDITEQKQNEDKIKKITAQLQQSHKMEAIGILAGGIAHDFNNILFPIFGYTQM 197

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           + +    P  +P +    + I  +G    D+V  +L  S+  SG      +PV +   V 
Sbjct: 198 LIDDI--PEDSP-FRSSLDEILAAGMRARDLVKQILTFSRQGSG----DLQPVQMQLIVI 250

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS-GGQIIIS 728
           EA+ L++     K I I+ +  ++   I AD   + QI +N+ +NA H     GG+I I 
Sbjct: 251 EALKLIRSSIP-KSIEIKQNIQSDCGLIKADPTQIHQIIMNLATNAYHAMEETGGKIDIK 309

Query: 729 TT-------------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
                              + V+L + D G G+   +L+K  +P+    N    + +GTG
Sbjct: 310 LQEVTLGEDAWTNENLQPGKYVLLTITDNGCGIPQSQLDKIFEPYFTTKN----KDKGTG 365

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
           LGL +   +V    G   ++S   KGT + I  PL +
Sbjct: 366 LGLSIVYGIVKKYKGNIKVYSEVGKGTAVHIYLPLIE 402



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/204 (11%), Positives = 64/204 (31%), Gaps = 12/204 (5%)

Query: 63  SNTNYLDSENTFV--FDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCD 120
           S  +  ++ + F   ++  P   +   +++A+GY  E++      +G    ++IG    D
Sbjct: 27  SEASLKENSSKFRRLYENFPLPSQ---SLNANGYFIEVNPAWLNLLGYSLEEVIGKPFSD 83

Query: 121 VSDILHIDPNNHIGDLLKRQNTWYGKTT-LWPIEGTNLYVPIDLAALPIYSRNREFSGFR 179
                          +LKR     G    +   +G+   + + L          +    +
Sbjct: 84  FLHPDWKKHFKEHFPILKRIGEVLGVEFEMVKKDGSL--ILVSLNGNISKDEYGKVQ--Q 139

Query: 180 GFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL--RMK 237
              +              K++  +    H+++          +D  +   P       + 
Sbjct: 140 THCVFQDITEQKQNEDKIKKITAQLQQSHKMEAIGILAGGIAHDFNNILFPIFGYTQMLI 199

Query: 238 NKVSSLTEYYAHKDDVLKTEKYPL 261
           + +   + + +  D++L       
Sbjct: 200 DDIPEDSPFRSSLDEILAAGMRAR 223



 Score = 46.9 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 29/243 (11%), Positives = 76/243 (31%), Gaps = 16/243 (6%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
               A   E  +      +  P+P   + ++G     NP++L L  Y S++++       
Sbjct: 25  EKSEASLKENSSKFRRLYENFPLPSQSLNANGYFIEVNPAWLNLLGY-SLEEVIGKPFSD 83

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
            L    K           + +     +     +        + + ++       +++ + 
Sbjct: 84  FLHPDWKKHFKEH---FPILKRIGEVLGVEFEMV---KKDGSLILVSLNGNISKDEYGKV 137

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
              + +  +  + + N+ K++    QL        + I I+   GI    N  +  +FGY
Sbjct: 138 QQTHCVFQDITEQKQNEDKIKKITAQLQQ--SHKMEAIGIL-AGGIAHDFNNILFPIFGY 194

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
               I   P       +   ++   +            + +T        L  +++ +  
Sbjct: 195 TQMLIDDIPEDSPFRSSLDEILAAGMRA-----RDLVKQILTFSRQGSGDLQPVQMQLIV 249

Query: 548 LPF 550
           +  
Sbjct: 250 IEA 252


>gi|331082888|ref|ZP_08332009.1| hypothetical protein HMPREF0992_00933 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330400029|gb|EGG79682.1| hypothetical protein HMPREF0992_00933 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 549

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 75/368 (20%), Positives = 150/368 (40%), Gaps = 31/368 (8%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
                    +  +   I E   +G  +I++   +LS N +  KL G       +   T+ 
Sbjct: 211 HREIEDARKQQEEFSLITENMEEGFLVIDKHTEVLSYNSSALKLLGDSKWQGRQSILTLN 270

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK-KLPFSSCYSLTMH 559
             +    ++   L                      E+   +      +    +   + + 
Sbjct: 271 RSEEFQGIVEQVLEG----------HHTVRMMEFPERSCQIAANPVWQGKEVTGAVIIIL 320

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           D++E  + +                + +F A VSHE++TPLT+I GF+E+IK+   G + 
Sbjct: 321 DVTERMRGE--------------QLRREFTANVSHELKTPLTSISGFAEIIKD---GFVK 363

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
                 +A+ I +    ++ +VND++ IS+++ G++    E V L +  SE +  ++  A
Sbjct: 364 PEDTKVFASRIFKEAQRLITLVNDVIKISQLDEGEIVYQKEQVDLYQLSSEVLHRIEHSA 423

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
            EK + +    ++   ++      + ++  N+  N + +   GG + ++     N +V +
Sbjct: 424 KEKDVKLYLEGSH--VQVSTVRMILDEVLFNLCENGLKYNKQGGSLTVTLK-EENNKVEI 480

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V DTG+G+   E  +  + F ++  S      GTGLGL + K        K  + STP 
Sbjct: 481 SVEDTGIGIPEGEQSRVFERFYRVDKSHSKAIGGTGLGLSIVKHGCMYLGAKVDVESTPG 540

Query: 800 KGTLIEII 807
            G+   I 
Sbjct: 541 VGSKFTIT 548


>gi|293372644|ref|ZP_06619026.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
 gi|292632453|gb|EFF51049.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
          Length = 862

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 91/536 (16%), Positives = 183/536 (34%), Gaps = 33/536 (6%)

Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANP 346
               ++ N +ES   +  +    +     E  N               Y    ++ + N 
Sbjct: 342 IVWLMRANRRESKRRIQAQTRLLVQNKLVEQRNEFDNVFHSIRDGVITYDTDLHIHFTNR 401

Query: 347 SFLLLTK--YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
           S L +    Y+S           ++        +     +    +    +         +
Sbjct: 402 SLLQMLHLPYESGGRFYEGMMAGSIFKIYYNGQDILHSMLKQVAAKGESVKIPQGAFMKE 461

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
            + +    ++       ++               +        E++       ++ +S  
Sbjct: 462 VHSDKYFPVSGEIVPIRSKDTITGMALSARNISNE--------EMQKRFFDMAVDESSIY 513

Query: 465 IAIINREGIILSTNRAVSKLFGYPVE--DILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522
               + E       +   K  GY      I R      +  +    ++      L     
Sbjct: 514 PWQFDMETNCFIFPQGFLKRLGYDESVTTISRDEMDRTIYPDDLKEISPLFNRAL-TGED 572

Query: 523 QTLEKITLGSTKEEKLLSLRII---IKKLPFSSCY--SLTMHDISEWKQEKNKLSHAKKI 577
                         +          I  L   S Y        I  +K  + ++  A+  
Sbjct: 573 SNTRLNFRQRNVNGEYEWWEYRSSVITGLTQDSLYNILGVCQSIQRYKTAEQEMREARDK 632

Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
           A +    KS FLA +SHEIRTPL AI+GFS+++ +       +    ++   I+++  L+
Sbjct: 633 ALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDT--SGFTSEEIAQFIGTINKNCGLL 690

Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN-NIPR 696
           L ++ND+LD+S+IESG M   F   +L   +       +L      + +       +   
Sbjct: 691 LALINDILDLSRIESGTMEFMFAEHNLPLLLKTVHDSQRLNMPP-GVELVLRMPESDKKY 749

Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN---EEVILRVRDTGVGMTNYEL 753
           +  D   ++Q+  N+++NA  FT SG    I+  +  +       + V DTGVG++   +
Sbjct: 750 LTTDNVRLQQVVNNLINNAAKFTSSG---FITFGYEDDEVPGYTRIFVEDTGVGISEEGI 806

Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
               + F ++ N      +G GLGL + + +++   G   + S   KGT   +  P
Sbjct: 807 RHIFERFYKVDNFT----QGAGLGLSICQTIIERLNGTISVTSEVGKGTRFTVRLP 858


>gi|253701498|ref|YP_003022687.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21]
 gi|251776348|gb|ACT18929.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21]
          Length = 849

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 78/417 (18%), Positives = 152/417 (36%), Gaps = 41/417 (9%)

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
           I   KA Q         +E +  +    +  +     +L  +L++  + I  I+ +G   
Sbjct: 309 IRERKAAQEHLQDQAVLLEEQIDERWQAEEALRGSEERLRLLLDSAGEAIYGIDLQGNCT 368

Query: 476 STNRAVSKLFG-YPVEDILRKPFTVFLEQNTP-----SVMNHYLTEILSLDLRQTLEKIT 529
             N+A  ++ G +  +  L +     +  + P           + + L  +    +    
Sbjct: 369 FCNKACLRMLGAHSPDQYLGRNMHDIIHHSYPDGTPMPRKACKVHQTLREEQGCHVNDEV 428

Query: 530 LGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
                +     +                 +   DI++ K+ + +   ++K+         
Sbjct: 429 FWR-ADGSSFPVEYWSHPQVKDGKVVGAVVAFIDITDRKRLEEQYRQSQKM-----ESVG 482

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
                V+H+    L+ I+G +E +  ++       +   Y   I  +     +I   LL 
Sbjct: 483 RLAGGVAHDFNNMLSVILGAAE-LSRRKLKEG--EQIDAYLEVITNAAKRSSEITRQLLA 539

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706
            S+ E     +   P+ L++ + E+  ++    +E  I +  +    +  +  D   V Q
Sbjct: 540 FSRKE----VVSPRPLDLNQLILESNKILARLISE-DIELSFTPDPGLWTVSIDPSQVDQ 594

Query: 707 IALNILSNAIHFTPSGGQIIISTT--------------HTSNEEVILRVRDTGVGMTNYE 752
           I +N+  NA    P+GG++ I T                 S + V L V DTG GM    
Sbjct: 595 ILMNLAVNARDAMPNGGRLSIETRNLRLTGDCSQIHPDAHSGDYVQLTVSDTGQGMDKAT 654

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +E   +PF          G+GTGLGL     +V  N G   ++S P +GT+  I  P
Sbjct: 655 VEHIFEPFFTTKEL----GKGTGLGLATVYGIVTQNRGFINVYSEPGQGTVFRINLP 707



 Score = 48.1 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/258 (10%), Positives = 58/258 (22%), Gaps = 16/258 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIG-NYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144
            + ID  G     ++   + +G +   + +G  + D+    + D         K   T  
Sbjct: 358 IYGIDLQGNCTFCNKACLRMLGAHSPDQYLGRNMHDIIHHSYPDGTPMPRKACKVHQTLR 417

Query: 145 GK-------TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG 197
            +          W  +G++   P++  + P   ++ +  G     I              
Sbjct: 418 EEQGCHVNDEVFWRADGSSF--PVEYWSHP-QVKDGKVVGAVVAFI--DITDRKRLEEQY 472

Query: 198 KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257
           ++  K  S                  I            + +                +E
Sbjct: 473 RQSQKMESVGRLAGGVAHDFNNMLSVILGAAELSRRKLKEGEQIDAYLEVITNAAKRSSE 532

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
               L +             +N       +    L +   E                   
Sbjct: 533 ITRQLLAFSRKEVVSPRPLDLNQLILESNKILARLISEDIELSFTPDPGLWTVSIDPSQV 592

Query: 318 GENLTPETV---DKCPIP 332
            + L    V   D  P  
Sbjct: 593 DQILMNLAVNARDAMPNG 610


>gi|225174413|ref|ZP_03728412.1| integral membrane sensor signal transduction histidine kinase
           [Dethiobacter alkaliphilus AHT 1]
 gi|225170198|gb|EEG78993.1| integral membrane sensor signal transduction histidine kinase
           [Dethiobacter alkaliphilus AHT 1]
          Length = 558

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 71/254 (27%), Positives = 125/254 (49%), Gaps = 6/254 (2%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           ++E K+    L    +   + S  KS+F+A ++HE+RTPLT+I+ F E++ ++  GP+ N
Sbjct: 305 LTEGKKSLAVL---NQKLSENSRLKSEFMATMTHELRTPLTSIVAFCELLLDEIPGPI-N 360

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
               E    I  S   ++ ++ND+LD++K E+G + L  E V L++        +   A 
Sbjct: 361 EEQQENLMDIKTSAQQLMLLINDILDMAKFEAGHLRLDKENVDLNDVFRAVRRTMSSIAY 420

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
           +  + +  S A ++P +  D   ++Q+  N+++NA+  +  GG + I      NE   + 
Sbjct: 421 QNGVRLDVS-AVDLPLVYGDPERLRQMLSNLIANAVKHSKEGGYVHI-YAKADNEFAAIS 478

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V D G G+    +    + F Q  +S + R  GTGLGL L K + +   G   + S   +
Sbjct: 479 VEDNGDGIPPELMPHIFEKFRQGEDSLKRRRNGTGLGLALVKTLAELQDGNISVNSEVGE 538

Query: 801 GTLIEIIFPLYDTS 814
           GT   I  P     
Sbjct: 539 GTTFTIHIPFAKQE 552


>gi|167583130|ref|ZP_02376004.1| putative two-component regulatory system, sensor kinase protein
           [Burkholderia thailandensis TXDOH]
          Length = 1108

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 115/679 (16%), Positives = 226/679 (33%), Gaps = 43/679 (6%)

Query: 168 IYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ 227
           +    R    +    +  V +           L+   + +   ++   S +K        
Sbjct: 57  LRRDERTAQNYEQDIVDTVLQNRAALVTASLMLELHANGILPAQRT--SGDKGCVAGMPA 114

Query: 228 QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287
           QSP P L      +      A +   ++        S       +             + 
Sbjct: 115 QSPHPELEEGCDTAVQLLSAAGQSPSIEMVLADGSASYRHGFTTRLPSPARQQPAEATRD 174

Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG--NLFYAN 345
               + +  +                +         +++        +       +    
Sbjct: 175 LADAVLDRFRSRGIDPVVAARERRVVWLAVPAPAGKQSIQLVGASIVLNKQQIYAVVLTG 234

Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML-----YRSDRTCIAASARL 400
            +F  L    ++D +     +      P + D++  +  M+      R D +        
Sbjct: 235 MNFHDLLGQPAMDTLMAEPIIVDGDGHPLVPDSDVAQARMIDAKLQARQDGSLHWIPGFG 294

Query: 401 HTIQW--------------------NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
             ++                     +      +  +    A              + +  
Sbjct: 295 WALRRSPVIPGFGHMLHLLPLQMLIHAMRYELLLILSVAAALIALLVATFRYWNYQFLTR 354

Query: 441 RINKRKMEIEVMQL-CSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRKPFT 498
              +    +E   L   ++ AT  G+ I+ R    I+  N+    + G    D   +   
Sbjct: 355 TYAEASRALESEMLNHLLVHATPVGLCIVRRKNLEIMVANQIARSVLGLTSADT--RLPE 412

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM 558
               + +       L    S   +             +  L +     +L     +   +
Sbjct: 413 ALCSEFSMQRGEDALLNRNSHIYQFPFSLE---REPHDVHLEITYAPARLSHEEVFFCAI 469

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            D++E  + +  L  AK   E  +  K +F A +SHEIRTPL++++G  E++      P 
Sbjct: 470 ADMTEHHRAEQVLREAKLTTEAAAKAKVNFFASMSHEIRTPLSSLVGNIELVALGPLAP- 528

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
                 E    +  S   +L +VND+LD SKI+ G+++L  E  S+ E +S   +   L 
Sbjct: 529 ---EQRERVRAMQVSAEGLLQVVNDVLDFSKIDIGELSLSEEWRSMTELLSRLAASYALL 585

Query: 679 ANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737
           A  + + +  +F   IP R+  D   V QI  N+LSNA  FT SG +I +    T    +
Sbjct: 586 ATRQGLKLYLNFDRTIPTRLHFDPVRVSQIINNLLSNAFKFTQSG-KITLRARWTEPN-L 643

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
            + V D+G+G+ +   ++  +PF Q  +++  +  GTGLGL +   + +   G   + S 
Sbjct: 644 EISVIDSGIGIPDALRDRLFQPFTQGDSNRLAQARGTGLGLSICARLCELMNGHIALDSA 703

Query: 798 PAKGTLIEIIFPLYDTSHP 816
              GT I +  PL     P
Sbjct: 704 VGVGTHITVTLPLRSADSP 722


>gi|118579571|ref|YP_900821.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
 gi|118502281|gb|ABK98763.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
          Length = 645

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 111/531 (20%), Positives = 184/531 (34%), Gaps = 80/531 (15%)

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365
                     E E     T+   PIP F +     + + N +   L+  ++ + I     
Sbjct: 41  ERRKGEEALRESEQRLSATIQGSPIPTFVIDREQKIIHWNRALEQLSNIRADEVIGSDLA 100

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCI---AASARLHTIQWNRENSLAMTFIPFEKAN 422
                      D        L   + T         +    +   E   A  F P     
Sbjct: 101 WKAFY------DKERPTLANLLVREETSSLSSWYRGKFSKSRLVDEAYEATDFFPKWG-- 152

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
                                      E  +  S+      G   +N + II   N  + 
Sbjct: 153 ---------------------------EEGKWHSLFTNLPGGSFTVNHDYIIEEVNDVLC 185

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
            + GY  E+++ +P  +   +            I  L         T    K+  L+ + 
Sbjct: 186 DVTGYTREELIGQPCGIICPKGPHHCP------IFDLGKESIDNSETTVKAKDSNLVPII 239

Query: 543 IIIKKLPFSSCYSLT--MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
              +++   S   +     DI+E K  + +L HA+K+              V+H+    L
Sbjct: 240 KSARRITVGSREVIVENFQDITEQKLLEAQLGHAQKM-----EAVGQLAGGVAHDFNNIL 294

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
           TAIIG+  +++ +  G   +    +Y N I  S      + N LL  S+    K  +H  
Sbjct: 295 TAIIGYGNLLQMKVGG---DETLEKYVNQILYSAERAATLTNSLLAFSR----KHIIHVR 347

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720
            VSL+E ++ A  L+     E  I +R     +   ILAD   ++Q+ +N+++NA    P
Sbjct: 348 EVSLNEIIARAEKLLSRLVPE-DIELRVLVGPDC-SILADSTQMEQVLMNLVTNARDSMP 405

Query: 721 SGGQIIISTTH--------------TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
            GG++ IST                     V +   D GVGM     E+  +PF     +
Sbjct: 406 DGGRLTISTEPAFLDREFVHRQGYGEPGSFVKVTFSDNGVGMDEGIRERIFEPFFTTKET 465

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD-TSHP 816
               G+GTGLGL +   +V  + G   + S P +GT   I  PL   T  P
Sbjct: 466 ----GKGTGLGLAIVYGIVKQHEGYIDVSSQPGRGTTFTIYLPLITATDQP 512


>gi|320354830|ref|YP_004196169.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
           2032]
 gi|320123332|gb|ADW18878.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
           2032]
          Length = 946

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 105/674 (15%), Positives = 222/674 (32%), Gaps = 61/674 (9%)

Query: 163 LAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKY 222
           L  +P++        F   G +      +     G  L      +  ++   ++ E+   
Sbjct: 179 LNQIPMHDE-GYVLLFSRSGTILHAPDTSFIGREGSHLHGPQEDIALLRSRIAAQEQTLV 237

Query: 223 DIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQ 282
            + +              + +       D+   +    L+T  +  L     F +     
Sbjct: 238 RLRTDPIGGGPRADGAVFAVVYPVSLPGDN---SWSIVLVTPAQKVLGAMAAFRSQ---- 290

Query: 283 YTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNL 341
                    + +    SF    +             +      +D  P+  F+    G +
Sbjct: 291 -WLVVTGLAVVSVGLLSFFLSGNLAKRREEQRLQAMKEQLAGLLDLAPMGVFLLDPRGVV 349

Query: 342 FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401
            YAN     L    +   +     +  L        +         +      A      
Sbjct: 350 VYANQEAKRLVTDTTEAVVAGRPLIDFL------HRSCRPAVAAQIKDSIAGQAVQVEAA 403

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
            +     +   +           P  +         V     +RK      +L + ++  
Sbjct: 404 QLLTASGSLRDVVITA------TPYQIGSLQQCILIVRDVSAERKSAAWQRRLAAAVDQV 457

Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
            + + I++ +GII   N A+ ++ GY   +   +P  +   +   +  +    +++ L  
Sbjct: 458 KEAVLIVDDQGIIEYANVALGEMTGYSRGECGGQPARMLWAREQDAHFDQKFEDVVKLG- 516

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKI 577
            +      +   K+  L      +  +  +      Y L   DI+   +   ++  A+K+
Sbjct: 517 -EVWRGRIVNQRKDGSLFVAAATVSPVRDTMGAITHYVLVQRDITHEVEIDARMRQAQKM 575

Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
                         ++H+    L  IIGF+++   Q               +I + G   
Sbjct: 576 -----EAIGTLAGGIAHDFNNILGGIIGFTDMALLQCAPGT---ELHSNLLHIRQGGKRA 627

Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697
            D+V  +L  S+  +        PV +   + E++ L++       I I+     N  ++
Sbjct: 628 ADLVQQILTFSRQSAE----EKSPVVVAALIQESLKLMRATLPA-TIDIKQELWENTAKV 682

Query: 698 LADLRSVKQIALNILSNAIHFT--PSGGQIIISTT------------HTSNEEVILRVRD 743
           +A    ++QI +N+ +NA  ++    GG++ +               H + + + L V D
Sbjct: 683 MAAPVQIQQIVMNLCANAF-YSMKEKGGRLTLRLRRKRAAELGKTGDHEAGDWLALVVED 741

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TG GM N  L++   PF          GEGTG+GL +   +V    G+  + S P +GT+
Sbjct: 742 TGQGMENETLQRIFTPFFTTKKP----GEGTGMGLSVVHGIVRDLGGEITVRSQPEEGTV 797

Query: 804 IEIIFPLYDTSHPH 817
             ++ PL D   PH
Sbjct: 798 FTVLLPLVDQ-EPH 810



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 12/114 (10%), Positives = 35/114 (30%), Gaps = 5/114 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL-HIDPNNHIGDLLKRQNTWYGKT 147
           +D  G ++  +  L +  G    +  G     +         +    D++K    W G+ 
Sbjct: 464 VDDQGIIEYANVALGEMTGYSRGECGGQPARMLWAREQDAHFDQKFEDVVKLGEVWRGRI 523

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
                +G+       ++  P+       + +    +      + +  A  ++  
Sbjct: 524 VNQRKDGSLFVAAATVS--PVRDTMGAITHY--VLVQRDITHEVEIDARMRQAQ 573



 Score = 51.2 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 27/286 (9%), Positives = 75/286 (26%), Gaps = 17/286 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMI-GMRLCDVSDILHIDPNNHIGDLLK---RQN 141
            + +D  G +   ++E  + + +    ++ G  L D            +   +K      
Sbjct: 340 VFLLDPRGVVVYANQEAKRLVTDTTEAVVAGRPLIDFLHRSC---RPAVAAQIKDSIAGQ 396

Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
               +         +L   + + A P    + +    +   IV     +    A  +RL 
Sbjct: 397 AVQVEAAQLLTASGSLR-DVVITATPYQIGSLQ----QCILIVRDVSAERKSAAWQRRLA 451

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
                + E           +Y   +      + R +         +A + D    +K+  
Sbjct: 452 AAVDQVKEAVLIVDDQGIIEYANVALGEMTGYSRGECGGQPARMLWAREQDAHFDQKFED 511

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
           +         +      + + +        +++       Y+  +   +     D     
Sbjct: 512 VVKLGEVWRGRIVNQRKDGSLFVAAATVSPVRDTMGAITHYVLVQRDITHEVEIDARMRQ 571

Query: 322 TPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
             +            + G     N     +  +  +  ++ A G  
Sbjct: 572 AQKM-----EAIGTLAGGIAHDFNNILGGIIGFTDMALLQCAPGTE 612


>gi|170697001|ref|ZP_02888097.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           ambifaria IOP40-10]
 gi|170138175|gb|EDT06407.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           ambifaria IOP40-10]
          Length = 1034

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 115/636 (18%), Positives = 209/636 (32%), Gaps = 37/636 (5%)

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY 246
              D    A    L    + +      +     E Y   ++      +  +++     + 
Sbjct: 116 RTGDRAEVARYLSLSVLLARICAASSINRGRTLEGYHYSTRTGLFALIPHRDR----DDP 171

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
                +        L    E   P   D      +      +   +    +      +  
Sbjct: 172 ALVSPESRARVLDALSVDFERPYPGITDARP---HVRWLAPFTDPVSGRQRIRLAAEARD 228

Query: 307 NHPSLSAYFDEGEN--LTPETVDKCPIPFF--VYSHGNLFYANPSFLLLTKYKSVDDIEI 362
           N    +    E     L     D  P   F    + G L   +P+     + +S+  +  
Sbjct: 229 NGKPFAVLVTEYPPEYLLSWLADYRPEGMFYITTADGQLVTMDPTAGETGRVESLLKLNP 288

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ--WNRENSLAMTFIPFEK 420
             G ++   AP   D      ++ +          A   +           A T      
Sbjct: 289 WRGGASSSSAPVFRD----GFLLFHGKLEPTGWTLAYALSWTDIAAGVARSAGTLGAATL 344

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL-CSILEATSDGIAIINRE-GIILSTN 478
                           +      + +   +   L  S++E    G+ +I R+ G  +  +
Sbjct: 345 LALMVMWGLLLRFHRREFVPLYARSQRVFDSEALCRSVIEMAPIGLGLIARDDGHFMLVS 404

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
            A+  +      D               S +                + +          
Sbjct: 405 PALRDMVERIGGD----------YHALSSEVADAWQARGDAGGVLHGDLLVGDVQAAGLH 454

Query: 539 LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
           L       +   +      + D++  +Q   +L  A + A+  ++ KS FLA +SHEIRT
Sbjct: 455 LEFIACGARYQDTDVLIAAVADMTAKRQLVQQLEEAVRAADSANAAKSSFLAAMSHEIRT 514

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
           PL  I+G  E+++        + R     + +  S   +L +V+D+LD SKIE+G M++ 
Sbjct: 515 PLNVILGNLELLERSALDATQHGR----VHTLRTSATSLLALVSDILDFSKIEAGAMSVE 570

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSF-ANNIPRILADLRSVKQIALNILSNAIH 717
                L  AV   ++     A  K + +   F A++  R+  D     Q+  N+LSNA+ 
Sbjct: 571 SIAFDLTAAVERELNAFATIAKAKGVQLFCEFHASSTQRMRGDPTRFAQVLRNLLSNALK 630

Query: 718 FTPSGGQIIIST---THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           FT  G   +            E+ + V DTG+G+      K    F Q+  S   R  GT
Sbjct: 631 FTDVGRVTVRVAVVAERHDAPELSVEVEDTGIGIAAEHRRKLFNAFSQVDTSITRRYGGT 690

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           GLGL L   +V A  G+  + S P  G+   ++ PL
Sbjct: 691 GLGLALCDRLVAAMGGRIAVESEPGFGSRFSVLLPL 726


>gi|146306761|ref|YP_001187226.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp]
 gi|145574962|gb|ABP84494.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp]
          Length = 916

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 80/253 (31%), Positives = 142/253 (56%), Gaps = 8/253 (3%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  A+K A + S  KS+FLA +SHEIRTPL  I+GF+ +++     P    R  +Y   
Sbjct: 269 ELDFARKEALEASRIKSEFLANMSHEIRTPLNGILGFTNLLQKSELSP----RQQDYLAT 324

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I++S + +L I+N++LD SKIE+GK+ L   P +L + + + ++++   A+EK++ + + 
Sbjct: 325 IEKSADSLLGIINEVLDFSKIEAGKLVLESIPFNLRDLLQDTLTILAPAAHEKQLELISL 384

Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII---ISTTHTSNEEVILRVRDTG 745
              + P  +  D   +KQ+  N++SNAI FT  G  ++   +      + ++ + V DTG
Sbjct: 385 IYRDTPLALRGDPLRLKQVLTNLVSNAIKFTREGTIVMRAMVEDESVDSAQLRISVMDTG 444

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+++ +L    + F Q  NS   +  GTGLGL ++K +++   G+  + STP +G+   
Sbjct: 445 IGLSDEDLRALFQAFSQADNSLSRQAGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFW 504

Query: 806 IIFPLYDTSHPHD 818
           I   L       D
Sbjct: 505 ISLSLPKARDDAD 517


>gi|226939100|ref|YP_002794171.1| PhoR [Laribacter hongkongensis HLHK9]
 gi|226714024|gb|ACO73162.1| PhoR [Laribacter hongkongensis HLHK9]
          Length = 449

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 77/419 (18%), Positives = 161/419 (38%), Gaps = 39/419 (9%)

Query: 410 SLAMTFIPFEKANQFPENMP-----QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
           +L + ++   +    PE +       + +  +    + N++K+   + +  +  EA  DG
Sbjct: 51  ALLLRWLRAPRPECIPEGIGSWQQVFSALYRQARQQQFNQKKLSSTLERFINAGEAMPDG 110

Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
           + +++    I   N    +  G   +  +       + Q               L L  T
Sbjct: 111 VVVLDDSDRIEWINPMAVEHLGLDRQRDVGNLIANLVRQPGFHAFLTAEQHSQPLILHLT 170

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
                +          L + +     S+   L   DI++  + +                
Sbjct: 171 QPHELV----------LSVQLVPF-DSTRKLLLSRDITQLDRVQTVHR------------ 207

Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
             DF+A VSHE+RTPLT I GF E + +      G     ++   +      +  +V DL
Sbjct: 208 --DFVANVSHELRTPLTVIGGFVETLSD--MDAPGPDILRQFLPLMMEQARRMQVLVEDL 263

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN-EKRILIRTSFANNIPRILADLRS 703
           L +S++ESG  +  FE + + E +       +  ++    + +      ++         
Sbjct: 264 LTLSRLESGGKSQPFERIGMSELLHTLKVEAEGLSHGRHHVELAICTPCDL---WGAPNE 320

Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
           +     N++SNA+ +TP GG+I +          +  V D G+G+    + +  + F ++
Sbjct: 321 LHSALGNLVSNAVRYTPDGGRIRLLWQMQ-GGRAVFSVEDNGIGIAREHIPRLTERFYRV 379

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP--HDCI 820
              +     GTGLGL + K ++  +  +  + S P +G++   +FP    + P  H+ +
Sbjct: 380 DRGRSRSTGGTGLGLAIVKHILARHSARLEVDSEPERGSVFSAVFPPERLAEPSNHEAL 438


>gi|166009411|ref|ZP_02230309.1| sensor histidine kinase/response regulator [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166210747|ref|ZP_02236782.1| sensor histidine kinase/response regulator [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167401078|ref|ZP_02306581.1| sensor histidine kinase/response regulator [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|165991966|gb|EDR44267.1| sensor histidine kinase/response regulator [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166207927|gb|EDR52407.1| sensor histidine kinase/response regulator [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167049467|gb|EDR60875.1| sensor histidine kinase/response regulator [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|262361878|gb|ACY58599.1| Histidine protein kinase sensor [Yersinia pestis D106004]
 gi|262365983|gb|ACY62540.1| Histidine protein kinase sensor [Yersinia pestis D182038]
          Length = 1242

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 89/378 (23%), Positives = 168/378 (44%), Gaps = 16/378 (4%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG---YPVEDILRKPF 497
           R   + +   ++Q  SI+ A    + I    G +   N   + +     Y + +   +P 
Sbjct: 548 RRQAKLLHARLLQQESIINALPFAVFIRTASGELAVYNSHFADVHSDKLYDMLNQTHEPA 607

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF-SSCYSL 556
              +       ++ Y   +L     Q ++           +  + + I  L         
Sbjct: 608 HWPMTSPLDREIDKYCRSVLLNRKPQLVDLSVEIK---GDIRDIFLWIIPLNNAEQGVLG 664

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
              DIS+ K  + +L  A+  AE  +  KS FLA +SHE+RTP+ AI+G  E+       
Sbjct: 665 GWLDISQRKTVERQLEAARVEAESANRTKSTFLATISHELRTPMYAIMGLLELEIRS--- 721

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
               P   +    + +S   ++ +++D++D +KIE+G++++H   V   + +    +L Q
Sbjct: 722 --NRPVEKDTLVTVSKSAQSLMLLLDDIIDSAKIEAGQLSIHPTAVDFHQEMERMFTLYQ 779

Query: 677 LYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSN 734
             ANE+ +       ++IP + +AD+  V+Q+  N+L NA+ FT  G   + I+   +  
Sbjct: 780 PIANERGLRFSGWLDDHIPPLLMADMLRVRQVMGNLLGNALKFTEQGSVSVDITWEPSDE 839

Query: 735 EEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
           +  +  + + DTG+G++        +PF Q    +  R  G+GLGL +   ++    GK 
Sbjct: 840 QHGVMNIDITDTGIGISPAAQATLFQPFSQANEGKSPRFGGSGLGLWICHQLIHKMGGKI 899

Query: 793 YIFSTPAKGTLIEIIFPL 810
            + S   KGT + I  PL
Sbjct: 900 ALESQLGKGTSLLITLPL 917


>gi|326423716|ref|NP_759462.2| phosphate regulon sensor kinase PhoR [Vibrio vulnificus CMCP6]
 gi|319999076|gb|AAO08989.2| phosphate regulon sensor kinase PhoR [Vibrio vulnificus CMCP6]
          Length = 432

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 74/426 (17%), Positives = 159/426 (37%), Gaps = 36/426 (8%)

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
           V         +    RL    W+ +            +         NG+       R  
Sbjct: 37  VATALQLGWHLHNQVRLSAWLWDEKR-------LTPPSGSGNWESLFNGLYRLQQRQRRK 89

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
           ++++   + +  +  E+  D + +   EG I+  N+    L G+   +   +P +  L  
Sbjct: 90  RKELTNLIRRFRNGAESLPDAVVVFRAEGNIVWCNKLAQHLLGFHWPEDSGQPISNLLRT 149

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                          L++   L              +L + I        + + + D+++
Sbjct: 150 PDFIKYLSGNDFSEPLEMCSPLNVER----------TLELRIVPYTEGE-HLMVVRDVTQ 198

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            KQ +                + +F A VSHE+RTP+T + G+ E+   +    L  P +
Sbjct: 199 LKQLEG--------------MRRNFFANVSHELRTPMTVLQGYLEM--TEDPDMLVGPMW 242

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            +    +    N +  +VN LL +SKIE+  ++   E V +   +          + + +
Sbjct: 243 GKAHRVMTEQLNRMNSLVNQLLTLSKIEASPIHELDEVVDVPAMLEVLEKEAVSLSGDNQ 302

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
             I       + ++ AD   ++    N++ NA+ +TP+G  + +   + +++   L V D
Sbjct: 303 HAISFQVDKAL-KVYADEDQLRSAISNLVYNAVKYTPAGASVQVRW-YRNSKGACLEVED 360

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           +G G+    + +  + F ++  ++     G+GLGL + K  +  +     I S    G+ 
Sbjct: 361 SGDGIEPQHIHRLTERFYRVDKARSRDTGGSGLGLAIVKHALTHHDTHLDIQSKVGSGSK 420

Query: 804 IEIIFP 809
              + P
Sbjct: 421 FSFVLP 426


>gi|209695879|ref|YP_002263809.1| phosphate regulon sensor protein [Aliivibrio salmonicida LFI1238]
 gi|208009832|emb|CAQ80140.1| histidine kinase PhoR (phosphate regulon sensor protein)
           [Aliivibrio salmonicida LFI1238]
          Length = 432

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 71/369 (19%), Positives = 147/369 (39%), Gaps = 29/369 (7%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           +  ++++ + + +     EA  D + +   EG I+  N     L G+   +    P T  
Sbjct: 87  KKRRKELSVLIRRFRQGAEALPDAVVVFRHEGNIVWCNSLAQSLLGFRWPEDSGHPITNL 146

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
           +               + LD+   +          +K L +RI          Y + + D
Sbjct: 147 IRPPDFVQYLLAQQFDIPLDMPSPIN--------SDKTLEIRIAPY---SEGEYLMVVRD 195

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           +++ KQ +                + +F A VSHE+RTP+T + G+ E+  ++    L  
Sbjct: 196 VTQIKQLEG--------------MRRNFFANVSHELRTPMTVLRGYLEM--SEDPDMLVG 239

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
           P +      +      +  +V  LL +SKIE+   ++  + V +   +       Q  + 
Sbjct: 240 PMWNRAHGVMTEQLTRMEGLVEQLLTLSKIEAAATSMLEDEVDVPAMLDILEKEAQALSG 299

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
           ++   I  +    + ++  D   ++    N++ NA+  T  G  I+I    +S     L+
Sbjct: 300 DRNHNITFNID-RLLKVQGDEDQLRSAISNLVYNAVKHTTDGANIVIDWRLSSAG-AKLK 357

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V D+G G+    + +  + F ++  ++     G+GLGL + K  +  +  +  I S   K
Sbjct: 358 VTDSGQGIEAQHIHRLTERFYRVDKARSRETGGSGLGLAIVKHALSHHDSQLEIQSKLGK 417

Query: 801 GTLIEIIFP 809
           G+    + P
Sbjct: 418 GSTFSFVLP 426


>gi|257458984|ref|ZP_05624103.1| sensor histidine kinase/response regulator [Campylobacter gracilis
           RM3268]
 gi|257443369|gb|EEV18493.1| sensor histidine kinase/response regulator [Campylobacter gracilis
           RM3268]
          Length = 1517

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 78/242 (32%), Positives = 123/242 (50%), Gaps = 10/242 (4%)

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
           + K  AE  +  KS FLA +SHEIRTPL  IIGF+E++KN       +    +Y + I++
Sbjct: 396 YQKGAAEDANKAKSIFLANMSHEIRTPLNGIIGFTELLKNTDL----DEEKRDYVDTIEK 451

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
           S   +L I+N++LD+SKIES K+ L     +  +    A+ +    A EK I I      
Sbjct: 452 SSENLLTIINNILDVSKIESNKVELEDILFNPIQDFESAVEIYVAKAAEKNIDILLYIDP 511

Query: 693 NIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-----VILRVRDTGV 746
            +   +  D+  +K++ +N++SNA+ FTP  G I++      ++      V   V DTG+
Sbjct: 512 TLVHHLYGDITKIKEVLINLMSNAVKFTPEHGTIVVEILREPSKAPGEAIVTFSVEDTGI 571

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G++  +L      F Q  ++   +  GTGLGL ++   V    GK  + ST  KGT    
Sbjct: 572 GISEDKLANVFNAFSQADSTITRKYGGTGLGLTISSKYVAMMGGKLQVKSTVGKGTRFYF 631

Query: 807 IF 808
             
Sbjct: 632 TL 633


>gi|297569538|ref|YP_003690882.1| multi-sensor signal transduction histidine kinase [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296925453|gb|ADH86263.1| multi-sensor signal transduction histidine kinase [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 648

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 96/631 (15%), Positives = 203/631 (32%), Gaps = 75/631 (11%)

Query: 236 MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN 295
            K +V++  E  A        E        +     +E                  L ++
Sbjct: 39  YKQQVAADLEARAALLHTKVVELVAAGELSQLQDYCREAGAAAATRLTVIAPDGRVLADS 98

Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTPET-----VDKCPIPFFVYSHGNLFYANPSFLL 350
            ++  +  +H   P ++A                  +       +     +     + L 
Sbjct: 99  VEQPAQMENHAGRPEVAAALAGETASAVRLSRSTGDETLYRAIPLRRDETVIGVLRTALP 158

Query: 351 LTKYK-SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
           LT  + ++ +I     +  LL A  +     +    L R      A + R     +    
Sbjct: 159 LTAVQQALHEINRQIVIGGLLIALIVVLVAWLVARRLSRPLEEMRAGADRFAAGHFE--- 215

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469
                     +            +             +E +  QL +++ +  +G+  ++
Sbjct: 216 ------RSIREEGAEELAGLARAMNRMAAQLATRLYTIEYQRSQLQAVVGSMVEGVITVD 269

Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM-------------------- 509
               +L  NRA S+L       +  K   V +  +    +                    
Sbjct: 270 GSARLLELNRAASQLLDIEPRQVRGKSIEVAIRNSGLKKLIRRTLTADAPVEGEFALLDL 329

Query: 510 --NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII-----------------KKLPF 550
                        L++  E                                         
Sbjct: 330 QGRERFCTARGNRLQRGAEHSPEARAAGRGATRGASRPFYTDSLNGQSEMMPTGEASDQG 389

Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
           +    L + D++  ++ +              + + DF+A VSHE++TP+T+I GF+E +
Sbjct: 390 TPGAVLVISDLTRIRRLE--------------NLRRDFVANVSHELKTPITSIEGFAETL 435

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG--KMNLHFEPVSLDEAV 668
            +         +   +   I +    +  I+ DLL +S+IE    +       + + E +
Sbjct: 436 LDGALDE--PEQARRFTTIILQQSRRLHAIIEDLLALSRIEQEGKRRATELAELPVLETL 493

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
             A       A  + I +    +  + R   +   ++Q  +N++ NAI +  +G  I IS
Sbjct: 494 QVAARTCADRAAAREITLEVDASPTL-RAWINPALLEQALVNLIDNAIKYGHAGRPIKIS 552

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
               + +E++L V D G G+ +  L +  + F ++  ++     GTGLGL + K +  A+
Sbjct: 553 -GQPAGDEILLSVSDQGPGIPSEALPRLFERFYRVDKARSTSLGGTGLGLSIVKHIAQAH 611

Query: 789 MGKFYIFSTPAKGTLIEIIFP-LYDTSHPHD 818
            G+  + S   +G+   +  P     S PH+
Sbjct: 612 GGRVGVHSVLNRGSTFTLYLPGNSPDSRPHN 642



 Score = 37.7 bits (86), Expect = 9.0,   Method: Composition-based stats.
 Identities = 32/285 (11%), Positives = 74/285 (25%), Gaps = 21/285 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D    L E++    + +     ++ G  +        +     I   L       G+  
Sbjct: 268 VDGSARLLELNRAASQLLDIEPRQVRGKSIEVAIRNSGL--KKLIRRTLTADAPVEGEFA 325

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           L  ++G                    F   RG  +        + RA G+   +  S   
Sbjct: 326 LLDLQGRE-----------------RFCTARGNRLQRGAEHSPEARAAGRGATRGASRPF 368

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
                +   E       S Q  P  + + + ++ +      + D +    + L T   S 
Sbjct: 369 YTDSLNGQSEMMPTGEASDQGTPGAVLVISDLTRIRRLENLRRDFVANVSHELKTPITSI 428

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
               E    ++      +Q         ++S    +        +  ++        + +
Sbjct: 429 EGFAETL--LDGALDEPEQARRFTTIILQQSRRLHAIIEDLLALSRIEQEGKRRATELAE 486

Query: 329 CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
            P+   +           +   +T          A     LL+  
Sbjct: 487 LPVLETLQVAARTCADRAAAREITLEVDASPTLRAWINPALLEQA 531


>gi|322421333|ref|YP_004200556.1| multi-sensor signal transduction histidine kinase [Geobacter sp.
           M18]
 gi|320127720|gb|ADW15280.1| multi-sensor signal transduction histidine kinase [Geobacter sp.
           M18]
          Length = 878

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 104/797 (13%), Positives = 236/797 (29%), Gaps = 130/797 (16%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGKTTLW 150
            G ++ +++   +  G    ++IG     V      D       +  +  +    +T   
Sbjct: 100 QGQIESLNQAAERMFGWLPQEIIGQHFTSVLPQFTDDKRLMRESEGFEEGDLRNHETIGC 159

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFG-IVHVNRVDNDPRALGKRLDKKFSHLHE 209
             +G +  V I ++ +       +  G   F  ++H            +   +    L +
Sbjct: 160 RRDGASFPVLITISKI-------DVVGPPLFAAMIHDISERKRAATALEEQREFSLKLVQ 212

Query: 210 IKKGHSSVEKEKYDIFSQQSP---PPHLRMKN--------------KVSSLTEYYAHKDD 252
                  V      +            +R                 +  +L +       
Sbjct: 213 DAAVPCFVLSPDRRVLVWNKACEELTGIRAAEVIGTGRHWQGFYDNEQPTLADVVLDGAP 272

Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
           +    K    T  +  L  ++    +             ++N   E    +      +  
Sbjct: 273 LELYGKCRASTFGKDGLQCEKWLRDVGGKDRYLFFDAVPVRNGKGEVIAVIETLQDLTDR 332

Query: 313 AYFDEGENLTPE----TVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
              +E    + E         P    + +   G    AN +F+ +  Y   + +  +   
Sbjct: 333 KNAEESMEKSEEKFFKAFHASPDGIVINTKTEGLFIEANEAFIGMLGYSREEVVGHSSRE 392

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
             L   P        + +     +         +     +      +        N    
Sbjct: 393 LGLWVDPG----QRARIIDQTNREGVVRNVEISIRV--KSGLIRTFLWSSDIIDLNDRDC 446

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCS---------------------ILEATSDGI 465
                    +  D + N+R++     +L S                      ++  +D +
Sbjct: 447 L---IVTVRDITDQKENERQLLRSKAELTSKHEELSALFGQVESVKREWEKTMDCINDMV 503

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
            +++ +G I   NRA  +  G P  +I+ + +   ++ +                +    
Sbjct: 504 ILLDPDGRIKRCNRATMEFVGLPYGEIIGRDWQQVMQTDMFVPPLD--------GINSFY 555

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSS-----CYSLTMHDISEWKQE---------KNKL 571
                  T       L +   +             +T++DI++ KQ          + K 
Sbjct: 556 CSEIRLETSNR---WLSVTYYRDSDDGDLEQSGAVVTINDITQTKQAALDLTEAYTELKA 612

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTP---------------------LTAIIGFSEVI 610
           +H + I +++ +      A V+HE+  P                     + A  G  + +
Sbjct: 613 THNQMIQQEKMASIGQLAAGVAHEVNNPTGYIISNLGTLAKYQTRLMDFINAQSGTIDTL 672

Query: 611 KNQRFGPLGNPRYIEYANYID-----------RSGNLVLDIVNDLLDISKIESGKMNLHF 659
                  + + R     +YI                 + +IV  L   S+ +  +     
Sbjct: 673 DRTEQEKIASLRKQMKIDYIIGDLPSLVSESLDGAERIKNIVQSLKCFSRKDDDRSTTA- 731

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719
              S+ + +   I+++      K   ++  +   IP I    + + Q+ +N++ NA H  
Sbjct: 732 ---SITDCLDSTINIIWNEIKYK-ATLKKEY-GEIPAIRCYPQKLSQVFMNLIVNAAHAL 786

Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
              G+I + T    N+ V + V DTG G+      +  +PF          G+GTGLGL 
Sbjct: 787 GETGEITVRT-WKKNDAVYITVTDTGSGIPEEIRGRVFEPFFTTK----EIGKGTGLGLS 841

Query: 780 LAKAMVDANMGKFYIFS 796
           ++  +V  + G+  + S
Sbjct: 842 ISYEIVRKHGGEITVES 858



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/151 (21%), Positives = 59/151 (39%), Gaps = 8/151 (5%)

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
            P            +   ++      L SI+E     +   N +G I S N+A  ++FG+
Sbjct: 61  APFVWAIVARPLRAVALSELARTEAVLKSIVE----AVVCFNSQGQIESLNQAAERMFGW 116

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
             ++I+ + FT  L Q T       + E    +        T+G  ++     + I I K
Sbjct: 117 LPQEIIGQHFTSVLPQFTDDK--RLMRESEGFEEGDLRNHETIGCRRDGASFPVLITISK 174

Query: 548 LPFSSC--YSLTMHDISEWKQEKNKLSHAKK 576
           +       ++  +HDISE K+    L   ++
Sbjct: 175 IDVVGPPLFAAMIHDISERKRAATALEEQRE 205



 Score = 44.6 bits (104), Expect = 0.065,   Method: Composition-based stats.
 Identities = 36/422 (8%), Positives = 92/422 (21%), Gaps = 74/422 (17%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMI--GMRLCDVSDILHIDPNNHIGDLLKRQNTWY-- 144
           +     +   ++   +  G  A ++I  G          + +    + D++         
Sbjct: 221 LSPDRRVLVWNKACEELTGIRAAEVIGTGRHWQ----GFYDNEQPTLADVVLDGAPLELY 276

Query: 145 GKTTL------------WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192
           GK               W  +       +   A+P+ +   E         +       +
Sbjct: 277 GKCRASTFGKDGLQCEKWLRDVGGKDRYLFFDAVPVRNGKGEVIAV--IETLQDLTDRKN 334

Query: 193 PRALGKRL---------------------DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231
                ++                      +  F   +E   G     +E+    S +   
Sbjct: 335 AEESMEKSEEKFFKAFHASPDGIVINTKTEGLFIEANEAFIGMLGYSREEVVGHSSRELG 394

Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQ----YTKKQ 287
             +    +   + +               + +    +     D   +N         +  
Sbjct: 395 LWVDPGQRARIIDQTNREGVVRNVEISIRVKSGLIRTFLWSSDIIDLNDRDCLIVTVRDI 454

Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE---TVDKCPIPFFVYS-HGNLFY 343
                        +      H  LSA F + E++  E   T+D       +    G +  
Sbjct: 455 TDQKENERQLLRSKAELTSKHEELSALFGQVESVKREWEKTMDCINDMVILLDPDGRIKR 514

Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA----R 399
            N + +        + I                         + ++D             
Sbjct: 515 CNRATMEFVGLPYGEIIGR-------------------DWQQVMQTDMFVPPLDGINSFY 555

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459
              I+    N         +  +   E         +   T+     +     +L +   
Sbjct: 556 CSEIRLETSNRWLSVTYYRDSDDGDLEQSGAVVTINDITQTKQAALDLTEAYTELKATHN 615

Query: 460 AT 461
             
Sbjct: 616 QM 617


>gi|116053634|ref|YP_793961.1| putative two-component sensor [Pseudomonas aeruginosa UCBPP-PA14]
 gi|296392349|ref|ZP_06881824.1| putative two-component sensor [Pseudomonas aeruginosa PAb1]
 gi|313111575|ref|ZP_07797374.1| putative two-component sensor [Pseudomonas aeruginosa 39016]
 gi|115588855|gb|ABJ14870.1| putative two-component sensor [Pseudomonas aeruginosa UCBPP-PA14]
 gi|310883876|gb|EFQ42470.1| putative two-component sensor [Pseudomonas aeruginosa 39016]
          Length = 595

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 92/558 (16%), Positives = 200/558 (35%), Gaps = 41/558 (7%)

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH-PSLSAYFDEG 318
                 ++    Q DF  +                       YL  + H P+L       
Sbjct: 72  REKPDGQALERSQNDFRRVLEQGRANTVDGAEQAALDGVRDAYLQLQAHTPALLKAPMAD 131

Query: 319 ENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEI--AGGLSTLLDAPKLS 376
            +   E  +             L   +   L L      +      A  ++ LL    ++
Sbjct: 132 NDGFSEAFNTL----------RLRLQDLQQLALAGISDAETSARHRAYLVAGLLGLVGVA 181

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
                       + R                E    +T  P     +  +   + G+  E
Sbjct: 182 ILLIGFVTAHSIARRFGAPIETLARAADRIGEGDFDVTL-PMTNVAEVGQLTRRFGLMAE 240

Query: 437 DVD--TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
            +    + +  ++     +L ++L++  DG+ I + +G I   N    +      +   +
Sbjct: 241 ALRQYRKTSVEEVLSGERRLQAVLDSIDDGLVIFDNQGRIEHANPVAIRQLFVSNDPHGK 300

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-- 552
           +   +  + +    +   L   +  +    L    +    E +LL+  +     P     
Sbjct: 301 RIDEILSDVDVQEAVEKALLGEVQDEAMPDL---VVDVAGESRLLAWSLYPVTHPGGHSV 357

Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
              L + D++E +  +                +S+F+ R SHE+RTP+T +   +  +  
Sbjct: 358 GAVLVVRDVTEQRAFE--------------RVRSEFVLRASHELRTPVTGMQ-MAFSLLR 402

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
           +R       R  +    +D   + ++ ++NDLL+ S+ ++G   L      L + +++A 
Sbjct: 403 ERLDFPAESREADLIQTVDEEMSRLVLLINDLLNFSRYQTGMQKLELASCDLVDLLTQAQ 462

Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
                    +R+ ++    + +PR+  D   ++++  N+L NA+  +  GGQI +     
Sbjct: 463 QRFTPKGEARRVSLQLELGDELPRLQLDRLQIERVIDNLLENALRHSSEGGQIHLQ-ARR 521

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
             + V++ V D G G+   +  +  +PF Q+      +  G GLGL L K ++  + G+ 
Sbjct: 522 QGDRVLIAVEDNGEGIPFSQQGRIFEPFVQV----GRKKGGAGLGLALCKEIIQLHGGRI 577

Query: 793 YIFSTPAKGTLIEIIFPL 810
            + S P +G    ++ P+
Sbjct: 578 AVRSQPGQGARFYMLLPV 595


>gi|150006789|ref|YP_001301532.1| two-component system sensor histidine kinase [Parabacteroides
           distasonis ATCC 8503]
 gi|149935213|gb|ABR41910.1| two-component system sensor histidine kinase [Parabacteroides
           distasonis ATCC 8503]
          Length = 571

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 85/394 (21%), Positives = 178/394 (45%), Gaps = 34/394 (8%)

Query: 424 FPENMPQNGIEPEDVD-TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
                  N +     +  +     +      + +I+ + ++ I  ++R+  IL  N    
Sbjct: 201 EGVAKSFNRMAERLTEYRKSTLADIIQGKKYIEAIVNSITEPIIGLDRDRKILFANNEAL 260

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE--EKLLS 540
            +     E+++ K  +        S+ N  L  ++   ++ + +K  L    +  E    
Sbjct: 261 TILNLKRENVIGKSASEL------SLRNDLLRRLVRELIQPSEKKEPLKIYADNKESYFQ 314

Query: 541 LRIIIKKLPFSS------CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
           ++ I  ++  +          + + +I+E+K              +  S K+ F++ +SH
Sbjct: 315 VQYIPIRVSENGEAEVYVGDVILLKNITEFK--------------ELDSAKTTFISTISH 360

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           E++TP++AI+   +++++ R G + N      A  I  S N +L+I ++LL ++++E+GK
Sbjct: 361 ELKTPISAIMMSLKLLEDARVGAM-NDEQKALAESIKESSNRLLEITSELLKMTQVEAGK 419

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714
           + L+ +     E +  AI   Q+ A+     I   +   I ++  D   +  +  N+LSN
Sbjct: 420 LQLNPKITKPIELIEYAIKANQVQADRFNCHIEVEYPEKISKLFVDSEKIAWVLTNLLSN 479

Query: 715 AIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           AIH+TP  G+III      +  V + V+D G G+     +     + ++P +   + +G+
Sbjct: 480 AIHYTPENGRIIIGARQQDH-SVEIYVQDFGKGIDPRYHQSIFDRYFRVPGT---KVQGS 535

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           GLGL ++K  V+A+ G   + S   KG+   I F
Sbjct: 536 GLGLAISKDFVEAHGGTLSVDSAVGKGSTFVIKF 569


>gi|91204590|emb|CAJ70818.1| conserved hypothetical protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 546

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 82/256 (32%), Positives = 125/256 (48%), Gaps = 17/256 (6%)

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF------------- 615
            +L  A +  +     KS FL+ VSHE+RTPLTAIIGF+ +IK +               
Sbjct: 290 RELKDANQKLQDLDKAKSGFLSTVSHELRTPLTAIIGFTNIIKKRLDTFIFPQIETNAIK 349

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
                 +  E  N I   G  + +++ND+LD++KIE+GK+       S+ E +  A +  
Sbjct: 350 SQKAIQQIKENINIILSEGERLTNLINDVLDLAKIEAGKIEWKRHQTSVTEVIMNATAAT 409

Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST-THTSN 734
                +K + +      NIP    D     Q+ +N++SNAI FT  G    IS     ++
Sbjct: 410 TALIEQKGLALNVDIEKNIPDFYGDKNRFIQVVINLISNAIKFTDKGA---ISCYAKQTD 466

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
            ++ + V DTGVG+    LEK    F Q+ ++   +  GTGLGLP+ K +V+ + G  + 
Sbjct: 467 NKIQVTVMDTGVGIAPENLEKIFDKFKQVGDTLTNKPGGTGLGLPICKQIVEYHGGSIHA 526

Query: 795 FSTPAKGTLIEIIFPL 810
            S P KGT      PL
Sbjct: 527 ESEPNKGTAFSFTIPL 542


>gi|113475126|ref|YP_721187.1| GAF sensor hybrid histidine kinase [Trichodesmium erythraeum
           IMS101]
 gi|110166174|gb|ABG50714.1| GAF sensor hybrid histidine kinase [Trichodesmium erythraeum
           IMS101]
          Length = 853

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 79/251 (31%), Positives = 124/251 (49%), Gaps = 8/251 (3%)

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG-----PLGNPRY 623
             L  A + AE  +  KS+FLA +SHE+RTPLT +IG S  +    +G      +   + 
Sbjct: 462 QDLYDAVQSAESANRAKSEFLATMSHELRTPLTCVIGISSTLLQWSYGNRGAKKMPIQKQ 521

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            +Y   I  SG  +L+++ND+LD+S++E+GK  L     SL +   E +   +  A +  
Sbjct: 522 RDYLKIIHDSGEHLLELINDILDLSQVEAGKTVLKISEFSLSKISYELLQNFREKAEQNE 581

Query: 684 ILIRTS--FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
           + +         +    AD R VKQI  N+LSN I FTP+GG + +          I +V
Sbjct: 582 VKLIFEPTVNPQLDLFAADQRRVKQILFNLLSNGIKFTPNGGSVRLKV-MRYKNTAIFQV 640

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            DTG+G++  +     K F Q+ +    +  GTGLGL L K +V+ + G   + ST   G
Sbjct: 641 EDTGMGISQEQKPLLFKKFQQLNSPYNRQQGGTGLGLALTKQLVELHNGIIEVESTVNVG 700

Query: 802 TLIEIIFPLYD 812
           +   +  P   
Sbjct: 701 STFTVKLPAQQ 711


>gi|45358683|ref|NP_988240.1| ATPase-like ATP-binding protein [Methanococcus maripaludis S2]
 gi|45047549|emb|CAF30676.1| ATP-binding protein, ATPase-like:Histidine kinase, HAMP
           region:Histidine kinase A, N-terminal:Bacterial sensor
           protein C-term [Methanococcus maripaludis S2]
          Length = 614

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 64/247 (25%), Positives = 129/247 (52%), Gaps = 4/247 (1%)

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            K + + L  +    ++  + KS+ L+ VSHE+RTPLTAI+G+ E++K++  G L   + 
Sbjct: 370 LKSDAHTLKTSFDELKEVDNLKSEILSIVSHELRTPLTAILGYVELLKDETAGKLS-EKQ 428

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            E+ + I  + + +  I +++ D+  +++  +++  + ++L + V++ +     +A  K 
Sbjct: 429 KEFISVISENSDRLKRITDNMSDLVTVDNKILDIKRDRINLKKEVNDILRSFDYFAESKN 488

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
           I++     N    I  D   + Q+  N++ NAI F+    ++ +         + L + D
Sbjct: 489 IVLLEDVDN--LDIKGDKSKIHQVLSNLIENAIKFSKKQTKVTV-MGFEDKGNIHLEITD 545

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
            G G+    L K    F QI +S +    G+GLGL + K +V+++ G  ++ S   KGT 
Sbjct: 546 QGPGIPKEHLGKIFDKFYQIDSSSKREVGGSGLGLAVCKKIVESHGGSIWVESKIGKGTT 605

Query: 804 IEIIFPL 810
           + ++FPL
Sbjct: 606 VHVMFPL 612


>gi|294054948|ref|YP_003548606.1| histidine kinase [Coraliomargarita akajimensis DSM 45221]
 gi|293614281|gb|ADE54436.1| histidine kinase [Coraliomargarita akajimensis DSM 45221]
          Length = 638

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 83/317 (26%), Positives = 146/317 (46%), Gaps = 28/317 (8%)

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRI----IIKKLPFSSCYSLTMHDISEWKQEKNK 570
             L   L +  E        E++L+          ++L      +L+M + +E  + + +
Sbjct: 148 ATLRTTLHERSEAERRWRRAEQELVDANADLIKRARELQDGRRIALSMMEDAELARVELE 207

Query: 571 LSHAK------------KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
             + +              A+  +  KS FLA +SHEIRTPL  +IGF +++        
Sbjct: 208 AINTRLGEVIEQAKSAAHHADVANEAKSSFLATMSHEIRTPLNGVIGFIDMLSQTEL--- 264

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
            N    EY   +  S   ++ ++ND+LD SKIESG+M      ++L   + E   L    
Sbjct: 265 -NAEQQEYIQSLQMSSETLMALINDILDFSKIESGRMEFETRSINLVRLLRETTQLFFGE 323

Query: 679 ANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-- 735
           A +K + ++  F+  +PR+   D   ++QI +N+L NA+ FT +G  I ++         
Sbjct: 324 AAKKGVELKLDFSEEVPRVVRGDETRIRQILINLLGNAVKFTDTGS-IAVAVHCYEPWTT 382

Query: 736 ----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
               E+   + D+G+GMT  ++ K   PF Q  +S   +  GTGLGL + K + +A  G+
Sbjct: 383 GEVCEIEFEITDSGIGMTEDQVSKLFHPFLQADSSTTRKFGGTGLGLAICKRLSEAMGGR 442

Query: 792 FYIFSTPAKGTLIEIIF 808
            +  ST  +G+   +  
Sbjct: 443 IWATSTVGEGSCFFVRI 459


>gi|117618556|ref|YP_854589.1| virulence sensor protein BvgS [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117559963|gb|ABK36911.1| virulence sensor protein BvgS [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 1195

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 109/621 (17%), Positives = 224/621 (36%), Gaps = 21/621 (3%)

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
           + ++ +   +    + ++   ++P   L++ +         +  ++      +      +
Sbjct: 321 VADLLQVLRAKLGVEIEVVPVKTPGQMLQLLDGGQVDIAVLSPSEERRSRYLFSRAFVLD 380

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
                    H     +   K     +  +              +   +    + L     
Sbjct: 381 PLAYVVGVRHEATAPETLLKTGTVAIIKDFISEQAIEEEYGKLTTRKFERIEDALRCVAS 440

Query: 327 DKCPIPFFVYSHGNLFYANPSFLLLTKYK-SVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
           + C +           Y N  F         + D    G    +     +  +   + + 
Sbjct: 441 ETCDVTVLPLRVAKY-YINSKFPDSLLITGELFDSIPIGAAFAVSPKQHMLRDILDRVIA 499

Query: 386 LYRSDRTC-----IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
           +   D           S +   I W          I           +    +  +    
Sbjct: 500 IIPPDELEGLSNRWRVSTQQEAITWQELVREFGGIIALIMLLTIWIGLWGLSLHKQVRQR 559

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           R  +  +  ++  +  +++ T   I   +RE  ++  N   +  FG     +L       
Sbjct: 560 RAAEVALSAQLKFIEDLVDGTPHPIYARDREDRLVLCNSTYASFFGEDKSRLLGSTMAED 619

Query: 501 L-EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL-SLRIIIKKLPFSSCYSLTM 558
           +      + +   L+   ++   +  +     +T    +   ++                
Sbjct: 620 VQRWPFLAPLFEDLSTARTVRCARQGDHRLSMATGSVAVYHWVQPYYDLEGNVQGGIGGW 679

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE-VIKNQRFGP 617
            D+SE  +   +L+ A + A++ +  KS FLA +SHEIRTP+ AIIG  E  ++  R   
Sbjct: 680 IDVSERLRLLEELALASQDAQEANRAKSTFLATMSHEIRTPMNAIIGLLELTLRRDRL-- 737

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
             +       +    S   +L ++ D+LDISKIESG++ L  EP  +    +  +++   
Sbjct: 738 --HEEDKTSLSIAHGSAKDLLSLIGDILDISKIESGRLELRPEPHEITALTASVVTVFTA 795

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST-THTSNEE 736
            A +K + +  + A     +  D    KQI  N++SNAI +T  G  + +   + TS+  
Sbjct: 796 LARQKNLQLELA-AGEPRWVQIDGICYKQILSNLISNAIKYTEQGA-VRVELQSKTSDGW 853

Query: 737 VILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
             L+  +RDTG+G+   E  +  +PFGQ    + I+  GTGLGL +++++ ++  G   +
Sbjct: 854 CTLQLVIRDTGIGIAPAEQARLFQPFGQARQPEHIQRSGTGLGLMISRSLCESMGGSLLL 913

Query: 795 FSTPAKGTLIEIIF--PLYDT 813
            S P  GT I I    PL   
Sbjct: 914 ESEPGHGTCISIEMKVPLASA 934



 Score = 38.9 bits (89), Expect = 4.1,   Method: Composition-based stats.
 Identities = 27/238 (11%), Positives = 53/238 (22%), Gaps = 17/238 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCD------VSDILHIDPNNHIGDLLKR 139
            +  D    L   +       G    +++G  + +          L  D +        R
Sbjct: 584 IYARDREDRLVLCNSTYASFFGEDKSRLLGSTMAEDVQRWPFLAPLFEDLSTARTVRCAR 643

Query: 140 QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199
           Q                +Y  +     P Y       G  G  I                
Sbjct: 644 QG---DHRLSMATGSVAVYHWVQ----PYYDLEGNVQGGIGGWI--DVSERLRLLEELAL 694

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
             +     +  K    +    +       +    L +  +   L E       +      
Sbjct: 695 ASQDAQEANRAKSTFLATMSHEIRT-PMNAIIGLLELTLRRDRLHEEDKTSLSIAHGSAK 753

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
            LL+     L +     +  L    +      L  +    F  L+ + +  L     E
Sbjct: 754 DLLSLIGDIL-DISKIESGRLELRPEPHEITALTASVVTVFTALARQKNLQLELAAGE 810


>gi|218439787|ref|YP_002378116.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
 gi|218172515|gb|ACK71248.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
          Length = 936

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 74/260 (28%), Positives = 136/260 (52%), Gaps = 19/260 (7%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +    + +   +  + ++ES  KS FLA V HE+RTPL A+ G + ++ + +       +
Sbjct: 251 QHLSSEQESQTSLHLLQQESLAKSQFLAMVGHELRTPLNAVTGMTGLLLDTKLTN----Q 306

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             E+ N I  SG  +L ++N++LD +KIE+ K+ L   P  L +++ EA+ L    A+E+
Sbjct: 307 QREFINIIRNSGETLLTMINNILDFAKIEANKLELEETPFELGQSIEEALHLFVPQASER 366

Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNE----- 735
           ++ +      + P  I+ D+  +KQI +N+LSNA+ FT SG  ++ ++ T  +       
Sbjct: 367 KLELAYLIEPHTPNAIIGDVTRLKQILVNLLSNAVKFTESGEVVVYVNATPVTQHPVTPQ 426

Query: 736 --------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
                   E+   V+D+G+G+   ++++  K F Q+  S   +  GTGLGL ++K + + 
Sbjct: 427 KDKSSPLYEIRFAVKDSGIGIPREKMDRLFKSFSQVDASTSRKYGGTGLGLAISKRLTEM 486

Query: 788 NMGKFYIFSTPAKGTLIEII 807
             GK +  S   KG+     
Sbjct: 487 MGGKMWFHSVEGKGSTFYFT 506


>gi|162450950|ref|YP_001613317.1| two-component histidine kinase [Sorangium cellulosum 'So ce 56']
 gi|161161532|emb|CAN92837.1| two-component histidine kinase [Sorangium cellulosum 'So ce 56']
          Length = 637

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 86/638 (13%), Positives = 196/638 (30%), Gaps = 36/638 (5%)

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV-SSLTE 245
                   A     +     + +       V   +  I       P     + + +S+ E
Sbjct: 13  ADALKRQLAELGGAEALLQAILDSTSDCILVISPEGTILLSGRALPRASSASLLRTSIYE 72

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL-- 303
           + A +           +    +S   +      + +    +     +    + +   +  
Sbjct: 73  HIAPETREAARSCVERVVRSGASDSCECTIPGEHGHAARYEVKVSPILRGGRVATLLVIC 132

Query: 304 -SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIE 361
                  +  A     E      +        +    G++   N S   +    S +   
Sbjct: 133 ADVTERRATEAALRRSEERYRSVIAALDEGIVLQDASGSIEACNASAERILGLTSAEMAG 192

Query: 362 I--AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
                     +       +  + P ++          +  +   +   + +         
Sbjct: 193 RESRDPRWRAVHEDGAPFDGDLHPAIVTLRTGAPQK-NVIMGVHRPEGDMAWISINSQPL 251

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
                           +  + + ++ ++     +  +     + GI  ++ EG  L  N 
Sbjct: 252 LRPSESIPYAVVTSFHDITERKRSEEELRRSEERFRATFNQAAVGIGQVSVEGRWLRLNE 311

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
               L GY   ++    F               +  ILS ++ QT  +      K  +L+
Sbjct: 312 KFCDLVGYSHAEMTNLTFQQITYPPDLPHDIENVRRILSGEV-QTASREKRYVRKGGELV 370

Query: 540 SLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
             ++ +  +  +S     + +   DI++ K  +                + +FL   SHE
Sbjct: 371 WTKVTVSLVRHASGAPAYFVVIAEDITDRKHVEET--------------RQEFLTIASHE 416

Query: 596 IRTPLTAIIGFSEVIKNQRF----GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           ++TPLT ++   + +          P      I     ++     +  +V +LLDIS+I 
Sbjct: 417 LKTPLTPVMLRVQALLRMYRRAGGPPPAAEEVIPKLEAVEALLGRLHRLVEELLDISQIT 476

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
           +  M +  E V L   + + +S            +       +     D   ++QI  N+
Sbjct: 477 AAPMTVAPEEVDLSALLRDILSGHAPLLRRAACPVTVDAPTALRG-HWDPVRLEQIISNL 535

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           LSNA  +   G  + ++   +  +   L VRD G+G+   + E+  + F +   +     
Sbjct: 536 LSNASKYGG-GKPVDVALEAS-GDMARLTVRDRGIGIAAADHERIFRCFQRA--TTSRHY 591

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            G GLGL + +   +A  G   + S   +G    +  P
Sbjct: 592 SGFGLGLWIVREAAEAMGGAVRVESRLGEGARFTVELP 629



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/236 (8%), Positives = 62/236 (26%), Gaps = 8/236 (3%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI--DPNNHIGDLLKRQNTWYG 145
            +   G    ++E+    +G    +M  +    ++    +  D  N    L     T   
Sbjct: 299 QVSVEGRWLRLNEKFCDLVGYSHAEMTNLTFQQITYPPDLPHDIENVRRILSGEVQTASR 358

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +       G  ++  + ++   +   +   + F    I              +      S
Sbjct: 359 EKRYVRKGGELVWTKVTVSL--VRHASGAPAYF--VVIAEDITDRKHVEETRQEFLTIAS 414

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
           H  +       +  +      +++  P    +  +  L    A    + +  +  L  S+
Sbjct: 415 HELKTPLTPVMLRVQALLRMYRRAGGPPPAAEEVIPKLEAVEALLGRLHRLVEELLDISQ 474

Query: 266 ESSLPEQEDFHTINLNQYTKK--QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
            ++ P       ++L+   +        L   +       +              +
Sbjct: 475 ITAAPMTVAPEEVDLSALLRDILSGHAPLLRRAACPVTVDAPTALRGHWDPVRLEQ 530


>gi|159127382|gb|EDP52497.1| sensor histidine kinase/response regulator, putative [Aspergillus
            fumigatus A1163]
          Length = 2333

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 77/251 (30%), Positives = 129/251 (51%), Gaps = 12/251 (4%)

Query: 565  KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
            K  + +  H  K+ E  +  KS FLA +SH++RTP+  +IG SE++K    G + +    
Sbjct: 1868 KVAEAEAKHNVKLKEDAARAKSIFLANISHDLRTPMNGVIGLSELLK----GTILSKEQD 1923

Query: 625  EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
            EY   I    + +L ++ND+LD SK+E+GKM +   P+++ E +SE +  ++    ++ +
Sbjct: 1924 EYVESIRVCADTLLTLINDILDFSKLEAGKMKISTVPLNVKETISEVVRALRYTHRDRGL 1983

Query: 685  LIRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIIS--TTHTSNEEVILR 740
            +         P   +L D   + QI +N+LSN+  FTP G  I +    +      V L 
Sbjct: 1984 VTIEDLDKVPPDLVVLGDPVRLHQIFMNLLSNSYKFTPKGS-ITVRAKVSREGKNRVRLE 2042

Query: 741  --VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA-NMGKFYIFST 797
              V DTG+G+   +  +  KPF Q  +S      G+GLGL + KA+++    G  ++ ST
Sbjct: 2043 CAVSDTGIGIPEEQKSRLFKPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGAIWLDST 2102

Query: 798  PAKGTLIEIIF 808
            P  GT +    
Sbjct: 2103 PGVGTTVTFHL 2113


>gi|317128714|ref|YP_004094996.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus cellulosilyticus DSM 2522]
 gi|315473662|gb|ADU30265.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus cellulosilyticus DSM 2522]
          Length = 483

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 69/244 (28%), Positives = 122/244 (50%), Gaps = 3/244 (1%)

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           +   KL+  +         ++DF+A +SHE+RTPLTA+ GF E +++            +
Sbjct: 235 RMAEKLNTIENERGTLEKRRNDFIANISHELRTPLTAMKGFLEALQDGLV--KDTESQQK 292

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           Y   + R    +  +VNDL+D+ K+E   ++L    V L E + +    +Q     +   
Sbjct: 293 YYAIMYRETEYLNHLVNDLMDLIKLERQDISLDLYCVHLQEIIRKVALNLQPSIESRNND 352

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           I     +NIP ++ D   ++QI  NI+ NA  FT +G  I I       + V +++ D G
Sbjct: 353 IIIDAPDNIPPVIGDSIRLEQIFKNIIHNANKFTENGS-ITIKLEEHCKDNVCVKISDNG 411

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+ +Y++++  + F ++   +Q +  GTGLGL + K +V  + G+  + S    GT   
Sbjct: 412 IGIPSYDVKRIWERFFKVDRVRQKKERGTGLGLAIVKELVQLHHGEITVESELGVGTTFT 471

Query: 806 IIFP 809
           I FP
Sbjct: 472 IFFP 475


>gi|297568711|ref|YP_003690055.1| histidine kinase [Desulfurivibrio alkaliphilus AHT2]
 gi|296924626|gb|ADH85436.1| histidine kinase [Desulfurivibrio alkaliphilus AHT2]
          Length = 510

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 76/251 (30%), Positives = 126/251 (50%), Gaps = 5/251 (1%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E + +   L  AK+ AE  +  KS FLA +SHE+RTPL AIIG+SE++        G   
Sbjct: 247 ELEAQSRLLQQAKETAESANRAKSRFLANMSHELRTPLNAIIGYSELLLEDA-SEWGEWE 305

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             E    I  +G  +L +++D+LDISKIE+G+++LH E V  +  +++ ++ ++    + 
Sbjct: 306 ISEDLEKIKSAGQHLLMLISDILDISKIEAGRLDLHLEEVQWEPLLNDVVNTIRPLVVKN 365

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST---THTSNEEVIL 739
              ++         +  D   ++Q+  N+LSNA  FT  G +I++            +  
Sbjct: 366 NNRLQVDTPPEEITLFTDATKLRQVLYNLLSNATKFTTDG-EIMLKASLCRLRRQPRLEF 424

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V D+G+GM+  +L K  +PF Q  +S   +  GTGLGL +++       G     S P 
Sbjct: 425 AVSDSGIGMSEEQLAKIFQPFTQADSSTTRKYGGTGLGLVISRYFCRMMGGDIKATSRPG 484

Query: 800 KGTLIEIIFPL 810
            G    +  PL
Sbjct: 485 AGATFTVSLPL 495


>gi|70999294|ref|XP_754366.1| sensor histidine kinase/response regulator [Aspergillus fumigatus
            Af293]
 gi|66852003|gb|EAL92328.1| sensor histidine kinase/response regulator, putative [Aspergillus
            fumigatus Af293]
          Length = 2333

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 77/251 (30%), Positives = 129/251 (51%), Gaps = 12/251 (4%)

Query: 565  KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
            K  + +  H  K+ E  +  KS FLA +SH++RTP+  +IG SE++K    G + +    
Sbjct: 1868 KVAEAEAKHNVKLKEDAARAKSIFLANISHDLRTPMNGVIGLSELLK----GTILSKEQD 1923

Query: 625  EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
            EY   I    + +L ++ND+LD SK+E+GKM +   P+++ E +SE +  ++    ++ +
Sbjct: 1924 EYVESIRVCADTLLTLINDILDFSKLEAGKMKISTVPLNVKETISEVVRALRYTHRDRGL 1983

Query: 685  LIRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIIS--TTHTSNEEVILR 740
            +         P   +L D   + QI +N+LSN+  FTP G  I +    +      V L 
Sbjct: 1984 VTIEDLDKVPPDLVVLGDPVRLHQIFMNLLSNSYKFTPKGS-ITVRAKVSREGKNRVRLE 2042

Query: 741  --VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA-NMGKFYIFST 797
              V DTG+G+   +  +  KPF Q  +S      G+GLGL + KA+++    G  ++ ST
Sbjct: 2043 CAVSDTGIGIPEEQKSRLFKPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGAIWLDST 2102

Query: 798  PAKGTLIEIIF 808
            P  GT +    
Sbjct: 2103 PGVGTTVTFHL 2113


>gi|317151881|ref|YP_004119929.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316942132|gb|ADU61183.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 670

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 101/628 (16%), Positives = 203/628 (32%), Gaps = 43/628 (6%)

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS-----LTEYYAHKDDVLKTEKYP 260
            +      +S  E+    I     P     + ++        L  Y   ++   +   + 
Sbjct: 52  EMRGEAIAYSVAERGGSHILDNNVPQLLALIFDETRLHQRKYLVSYIFIENQAGEILAHT 111

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
           L      +L           +          + + +    E L    +   + +    ++
Sbjct: 112 LTRPLPENLLTNRLPAGAQDSIKLVYLDGEPVFDLAAAINEGL----YRIGTVHVGLNKS 167

Query: 321 LTPETVDKCPIPFFVYSHG--NLFYANPSFLLLTKYKSVDDIEI------AGGLSTLLDA 372
                V K  + F  +  G   +     S+L     + V D+         G     L  
Sbjct: 168 HIDALVGKLRVAFLGFISGVIAITIFLSSWLTRYITRPVSDLTRLSDEISRGNFDIPLKL 227

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
               D +A +      +D  C        T     E     +   + K          + 
Sbjct: 228 GPDEDWDASRCPAFTNTDLPCWHFDQARSTASPGGEYRKCASCTFYRKHEGDEVVQLADS 287

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVED 491
                   ++ +R++     +  S+ ++  D I +++   G I   N    +L+GY    
Sbjct: 288 FRNMVWSIKLYRRRLRESEEKYRSLFDSGPDPIFVVDCETGEIRDANPRAVELYGYSRAA 347

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
           +    F      +    +N ++            ++I      E   +++          
Sbjct: 348 LHGMRFVELGPDHNEKCVNFFVDG--GGGCVYFPKQIHYKRDNEPFFVNMHACPISYRGH 405

Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE--V 609
               + + DI+E  ++  +L  A K+         +  A V+HEI  PL AI   S+   
Sbjct: 406 HAIIIAVTDITEMIEKDAQLIQASKM-----KSLGEMSAGVAHEINQPLNAIKMGSDFLC 460

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           +  +    +    ++E    I    +   +I+N L    +    K +   E V L++ V 
Sbjct: 461 LMGEENADVPKEHFMEVVREISIQVDRAAEIINTLRSFGR----KSDFMEERVDLNQPVR 516

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT-------PSG 722
             +S+++       I         +  ++A    ++Q+  N+++NA             G
Sbjct: 517 AVLSMLRRQFELDNISFDLELTEGLAPVMAHSNRLQQVVFNLVANARDAINDKSSPHDEG 576

Query: 723 GQIIISTTH-TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
               IS         V + V DTG G+   + EK  +PF     +    G+G GLGL + 
Sbjct: 577 SDRRISIRSGAEGASVFIEVEDTGSGIDEEDREKIFEPFFTTKEA----GQGMGLGLAIT 632

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             +V    G   I S   KG++  + FP
Sbjct: 633 YGIVKDYGGDIRIRSEKGKGSVFRMQFP 660


>gi|238898708|ref|YP_002924389.1| hybrid sensory histidine kinase in two-component regulatory system
           with UvrY [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229466467|gb|ACQ68241.1| hybrid sensory histidine kinase in two-component regulatory system
           with UvrY [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 874

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 73/242 (30%), Positives = 124/242 (51%), Gaps = 10/242 (4%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L   KK  +++S  KS+FLA +SHE+RTPL ++IGF+     Q       P   +Y   
Sbjct: 221 ELEMTKKKVQEDSHMKSEFLANISHELRTPLNSVIGFA----RQTLKTSLTPTQTDYIKT 276

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           + +S + +L I+ND+LD SK+ + K+ L   P  L + V E + L+   A+EK + +   
Sbjct: 277 MKQSAHNLLSIINDVLDFSKLNAKKLILDHIPFQLRKNVDEVMILLAHSAHEKGLELILK 336

Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH----TSNEEVILRVRDT 744
             +++P  ++ D    +QI  N+L NAI FT  G  II+         ++  +++ ++DT
Sbjct: 337 IHHDVPDWVMGDPMRFQQIITNLLGNAIKFTEKG-HIIVQVALIAKKEASIHLLVEIQDT 395

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G G+   +  +  + F Q   S      GTGLGL + + +V A  G+    S   +G+  
Sbjct: 396 GKGIAPEQQAELFQAFIQTDASISRCHGGTGLGLAITRKLVQAMQGEINFDSQVNQGSTF 455

Query: 805 EI 806
             
Sbjct: 456 RF 457


>gi|116328008|ref|YP_797728.1| sensor histidine kinase and response regulator of a two component
           complex [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|116120752|gb|ABJ78795.1| Sensor histidine kinase and response regulator of a two component
           complex [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
          Length = 1252

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 98/385 (25%), Positives = 186/385 (48%), Gaps = 33/385 (8%)

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
            TRI   +++ +  +L  + E   +       +  IL   R   +      E++  +   
Sbjct: 471 QTRIQSEELQTQQEELKQMNEELEE-------QTQIL---RQQQEELKQMNEELEEQTQI 520

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM 558
           +  +Q     MN  L     +  +Q  E        EE+  +L +  K            
Sbjct: 521 LRQQQEELKQMNEELEGQTQILRQQQEELKVSNEELEEQTRALEMRNK------------ 568

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
               E +  KN +    +  E    +KS+FLA +SHE+RTPL +++  S+ + + +   L
Sbjct: 569 ----ELELAKNDIEQKTEQLELSGKYKSEFLANMSHELRTPLNSLLILSKDLADNKKKNL 624

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
            +   +E AN I +SG+ +L ++N++LD+SKIESGKM+++ E V L   V + IS  +L 
Sbjct: 625 -DEDQVESANIIYKSGHDLLVLINEVLDLSKIESGKMSVNLERVVLRTFVKDLISGFKLQ 683

Query: 679 ANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737
           A +K++ +   +  ++P  I  D + + QI  N++SNA+ FT  G +I +     +++++
Sbjct: 684 ATKKKLDLDLIYYEDLPEKIRTDPQRLDQILKNLISNALKFTERG-RIQLEVKRQNSDKI 742

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
           +  V D+G+G+   +     + F Q+  S   +  GTGLGL +++ +     G+ ++ S 
Sbjct: 743 LFSVIDSGIGIPEEKYSAIFEAFQQVDGSTSRKYGGTGLGLSISRELAGLLGGEIHLKSK 802

Query: 798 PAKGTLIEIIFPLY----DTSHPHD 818
             KG+   ++ P+     +TS P +
Sbjct: 803 VNKGSTFSLLLPIEGKRNETSIPKE 827


>gi|186683452|ref|YP_001866648.1| PAS/PAC sensor signal transduction histidine kinase [Nostoc
            punctiforme PCC 73102]
 gi|186465904|gb|ACC81705.1| PAS/PAC sensor signal transduction histidine kinase [Nostoc
            punctiforme PCC 73102]
          Length = 1019

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 118/870 (13%), Positives = 250/870 (28%), Gaps = 137/870 (15%)

Query: 51   QSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYA 110
            Q N         +       ++ F   P    V      D  G +KE +      +    
Sbjct: 179  QQNEELAIARETAELERRRYQDLFDLAPNAYLV-----TDLAGIIKEANYVTAALLSVRQ 233

Query: 111  FKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIY 169
              ++G        +   +P+     + L                G   + P  +  + +Y
Sbjct: 234  NYLVGKPF----ILFIAEPDRKTFMNKLTNLQQVQDWEVELQSRGGTAF-PASIKMVAMY 288

Query: 170  SRNREFSGFRGF--------GIVHVN-------RVDNDPRALGKRLDKKFSHLHEIKKGH 214
                +  G+R           I+             N      +        + +     
Sbjct: 289  DSQGQQIGWRWLLCDISEQQAILRDRQQAEKDLHRINAVLQAQQEASIDGILIVDENLTV 348

Query: 215  SSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ-- 272
            +S  ++   ++             K+           D    +   L    E S  ++  
Sbjct: 349  TSFNQKFSQLWQIPVALLERGDARKLLEWVLNQLVNPDEFVAKVEYLYQHPEQSSRDEIF 408

Query: 273  -------EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
                   + +                L++     + Y     +    A     +      
Sbjct: 409  LKSGKIFDRYSAPVRKHQGVCGETSALEDYYGRIWYYRDITEYKQAEAELRASKQRLALL 468

Query: 326  VDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
            +++ P+    ++    +   N +   +  Y + + +         +       +      
Sbjct: 469  IEQTPLAIIEWNTNFEVQIWNRAAERIFGYTTEEMLGNRF---ETIVPENARKHVNEIIT 525

Query: 385  MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
             L        + +     +  +    +   +          + +    +  +  + +   
Sbjct: 526  ALLTQRGRSFSVNN---NVTKDGRTMVCEWYN-NPLIAPDGQVIGVASMVLDITERKQA- 580

Query: 445  RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRKPFTVFLEQ 503
               E E  +  +++E +SD I I + EG +L  N A  K+ G   +E    K    F   
Sbjct: 581  ---EEEQQKFVALIENSSDFIGIASMEGQVLYVNPAGLKMVGLNSLEAAKTKSMDDFHSP 637

Query: 504  NTPSVMNHYLTEILSLDLRQTLEKITLGSTKE-EKLLS----LRIIIKKLPFSS-CYSLT 557
               + +   +  ++S       +        +    +     + ++         C  + 
Sbjct: 638  EAFAELIQQILPLMSQ--HGFWQGEFRHRHFQTGIEIPTDCNIFMVKHPETGEPFCQVVV 695

Query: 558  MHDISEWKQEKNKLSHAKKIAEKESSHK-----------------------SDFLARVSH 594
              DI+E KQ K  L  ++    +++                             +A V+H
Sbjct: 696  ARDITERKQAKEALLKSEAQLRQQAEELKVALREVQHAQTHLIQSEKMSSLGQLVAGVAH 755

Query: 595  EIRTPLTAIIGFSEVIKN------------QRFGPLGNPRYIEYANYIDR---------- 632
            EI  P+  I G     K             Q   P   P   ++A  I+           
Sbjct: 756  EINNPVNFIYGNLSPAKEYTRDLISLLQLYQSHYPEPIPEIQDFAERIELDFLKSDLPQI 815

Query: 633  ------SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK---- 682
                    + +  IV  L   S+++  +M      V + E +   + ++Q          
Sbjct: 816  LNSMNIGADRIRKIVLSLRTFSRLDEAEMK----AVDIHEGIDSTLMILQSRFKGNDQHA 871

Query: 683  RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS----GGQ------------II 726
            +I I   +   +P +      + Q+ +NILSNAI         GG+            I 
Sbjct: 872  KIQIIKEY-GKLPLVECYAGQLNQVFMNILSNAIDALEERVESGGKADKKNNQCPIPIIT 930

Query: 727  ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV- 785
            I T      +VI+R+ D G+G+     ++   PF          G+GTG+GL ++  ++ 
Sbjct: 931  ICTQLQEPNQVIIRIADNGLGIPENVKKQLFNPFFTTKP----IGKGTGMGLAISYQIIT 986

Query: 786  DANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            + + G     S P +G    I  PL   S 
Sbjct: 987  ERHGGSVECISQPGQGAEFVIKIPLMQNSQ 1016



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/312 (11%), Positives = 78/312 (25%), Gaps = 53/312 (16%)

Query: 318 GENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
                 + V+    P FV          N ++     +   + I  +          +  
Sbjct: 22  SPAFLHQMVNSISDPIFVKDRQHCWVLFNDNYCNFIGHSREELIGKSDY--DFFPQAEAD 79

Query: 377 DNNAIKPVMLYR-----SDRTCIAASARLHTIQWN--------RENSLAMTFIPFEKANQ 423
                  ++        S      A    H I               L  +       NQ
Sbjct: 80  VFRQKDELVFTTNIINESQDLFTDAQGITHLISTKKSCFEDETGNKFLVGSIRDIILPNQ 139

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEI--------------EVMQL--------------C 455
             + +       +  D       +                +  +L               
Sbjct: 140 VDKVLGVTDRVTDITDLMQTCEALRETLEELQVVEEELRQQNEELAIARETAELERRRYQ 199

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
            + +   +   + +  GII   N   + L       ++ KPF +F+ +       + LT 
Sbjct: 200 DLFDLAPNAYLVTDLAGIIKEANYVTAALLSVRQNYLVGKPFILFIAEPDRKTFMNKLTN 259

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKL 571
           +     +Q  +      ++        I +  +  S      +   + DISE +      
Sbjct: 260 L-----QQVQDWEVELQSRGGTAFPASIKMVAMYDSQGQQIGWRWLLCDISEQQAILRDR 314

Query: 572 SHAKKIAEKESS 583
             A+K   + ++
Sbjct: 315 QQAEKDLHRINA 326



 Score = 48.5 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/129 (13%), Positives = 44/129 (34%), Gaps = 5/129 (3%)

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
           +++  + N ++       L  ++ + SD I + +R+   +  N       G+  E+++ K
Sbjct: 8   DNLAQKHNTQQQNFSPAFLHQMVNSISDPIFVKDRQHCWVLFNDNYCNFIGHSREELIGK 67

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-- 553
               F  Q    V       + + ++    E   L +  +     +          +   
Sbjct: 68  SDYDFFPQAEADVFRQKDELVFTTNI--INESQDLFTDAQGITHLISTKKSCFEDETGNK 125

Query: 554 -YSLTMHDI 561
               ++ DI
Sbjct: 126 FLVGSIRDI 134


>gi|330503212|ref|YP_004380081.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
           mendocina NK-01]
 gi|328917498|gb|AEB58329.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
           mendocina NK-01]
          Length = 656

 Score =  281 bits (719), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 76/254 (29%), Positives = 128/254 (50%), Gaps = 11/254 (4%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E +Q   +L  A++ +E+ +  KSDFLA +SHE+RTP+  ++G  ++++        N  
Sbjct: 264 EQQQAIAELIQAREESEQANRAKSDFLAMMSHELRTPMNGVLGMLQLLETTSL----NDE 319

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             EYA     S   +L ++ND+LD S+IE G + L   P +L E +  +I + Q  A ++
Sbjct: 320 QSEYAALATESTEHLLKVINDILDFSRIERGALELEAIPFNLLELLQGSIQVFQHSAQQR 379

Query: 683 RILIRTSFANNI--PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL- 739
            + +       +    +  D   ++QI +N++ NA+ FT  G  I + T     ++ +L 
Sbjct: 380 GLQLLLDAQPGLERLEVRGDPTRIRQILVNLIGNALKFTEEG-HIRVETHWQPLDDQVLW 438

Query: 740 ---RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
               VRD+G+G+    LE     F Q   S   R  GTGLGLP+A+ + +   G     S
Sbjct: 439 FTCAVRDSGIGIDGERLEHMFDAFQQADTSISRRYGGTGLGLPIARTLAERMGGTLRAES 498

Query: 797 TPAKGTLIEIIFPL 810
              KG++  +  PL
Sbjct: 499 QLGKGSVFTLEIPL 512


>gi|300312677|ref|YP_003776769.1| two component hybrid sensor histidine kinase/response regulator
           protein [Herbaspirillum seropedicae SmR1]
 gi|300075462|gb|ADJ64861.1| two component hybrid sensor histidine kinase/response regulator
           protein [Herbaspirillum seropedicae SmR1]
          Length = 1160

 Score =  281 bits (719), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 110/641 (17%), Positives = 225/641 (35%), Gaps = 37/641 (5%)

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244
                     A  + L        +       +  +   +          R  +  ++L 
Sbjct: 92  QARAALPGEIARLRALLADNPDQLQRLSQIEGITND--KLQELAETIDLRRKGDAAAALA 149

Query: 245 EYYAHKD----DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF 300
              + +     D ++T    +   E   L  ++      ++  T   + G+         
Sbjct: 150 VVQSDRGKMSMDRVRTLAREMEGEERDLLAARQSDWRDAVSFSTAVAWGGSGLLLVLIVA 209

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDI 360
             ++                      ++            L     SFL       V  I
Sbjct: 210 AAMTTSRDYRQREKQAWIRAGQMGLAERLQG---EQRLDALGDNTLSFLTAYLNAQVGAI 266

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
            +             + ++A  P  L+        A+     +         +T      
Sbjct: 267 YLRSDGGDFERFASHALDDADGPRTLHSGQGLLGQAAKLNRAMHVKDVPEDYLTISSAVG 326

Query: 421 ANQFPE----NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476
             Q  E        +G+     +    ++    E   L  + +     IA+ + +     
Sbjct: 327 RRQPRELMVVPASADGMVQAVFELGFLRQVRPEEEELLARLSDQI--AIAVRSSKDR--- 381

Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
               + +L     E+  R+   +  +Q    V N  L E         L   T  +    
Sbjct: 382 --TRLEELL----EETQRQSEELQAQQEELRVNNEELEEQGQALKASQLRLETQQAE--- 432

Query: 537 KLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
               L     +L   +       D  +  + +  L       E+ + +KS+FLA +SHE+
Sbjct: 433 ----LEETNAQLEEQTQLLELQKD--DLAKTQVVLVEKATELERANQYKSEFLANMSHEL 486

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTPL + +  ++++ + + G L + +   +A  I  +GN +L ++ND+LD+SK+E+GK++
Sbjct: 487 RTPLNSTLILAKLLADNKQGNLSDEQVR-FAQTISSAGNDLLALINDILDLSKMEAGKLD 545

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNA 715
           +  E   L +   E  +   + A +K +  +      +P+ +  D++ + QI  N+LSNA
Sbjct: 546 IVPESFPLTKLADELSASFAITAQQKGLGFKVEVEPGVPQRMETDIQRLGQILKNLLSNA 605

Query: 716 IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           I FT  G ++ +     +   +   VRDTG+G+   + +   + F Q   S   +  GTG
Sbjct: 606 IKFTEKG-EVSLRIYPDAGGRIAFAVRDTGIGIGEDQHQFIFEAFRQADGSTHRKYGGTG 664

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF-PLYDTSH 815
           LGL +++ +     G   + S   +G++  +   PLY +  
Sbjct: 665 LGLSISRDLAHLLGGDIRVTSRLGEGSIFTLSLPPLYSSEQ 705


>gi|90022757|ref|YP_528584.1| PAS/PAC sensor signal transduction histidine kinase [Saccharophagus
           degradans 2-40]
 gi|89952357|gb|ABD82372.1| PAS/PAC sensor signal transduction histidine kinase [Saccharophagus
           degradans 2-40]
          Length = 481

 Score =  281 bits (719), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 98/487 (20%), Positives = 188/487 (38%), Gaps = 36/487 (7%)

Query: 330 PIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388
           P           + +A+     +  ++  + +E       L        N A    +   
Sbjct: 18  PDGIIALDADRCILFASELAQSILGWQKTE-LEGKHIHDILCI-----PNIATTHNIQAC 71

Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
                    +   +  W       ++        + P    +      +     N+ +M+
Sbjct: 72  PLCQTDNIDSETQSSNWLTGTGEYISVDYRVIPIESPHQTTRLISFSANHHRIHNQAEMK 131

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
               +L   ++     +   +R+G +L  N A+ +       D   +        N    
Sbjct: 132 ----KLADYVDNNPAPLVEFDRDGQMLFGNPALQEALLDWGFDAEGQ--AKIFPNN---- 181

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568
           +     + L      T E++TL    +   LS           +       DIS+ K  +
Sbjct: 182 LFSLCEQCLDSGASITGEEVTL----DNTYLSWHFHPIFSEGVTTVLGYAFDISKQKNAE 237

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
            +        E  +  + DF A++ HE+RTPL AIIGFS+V+   R     + R      
Sbjct: 238 LE------AKEARAQARRDFYAKMMHELRTPLNAIIGFSDVLL-WRSAAKLDERDNTALR 290

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I  +G  + +++ D LDISKIE+GKM +  E       + E    ++  A  K +   +
Sbjct: 291 NIKVAGIQLNEMITDTLDISKIEAGKMVVEPETFVASLLLQEMQEQMRYLAEAKGLTYHS 350

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE------EVILRVR 742
               +IP   +D + ++Q+  N++SNAI +T SG  + +S   T+N       E+++ V 
Sbjct: 351 VSNADIP-FHSDKKKIRQVLANLISNAIKYTKSG-DVRVSVIQTTNSIQTTESELVITVT 408

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG+G+   ++    + + ++  S+    +GTG+GL L   ++    G+  + S   +G+
Sbjct: 409 DTGIGIPEDQINSLFEAYQRVKESKNKDIQGTGIGLALVWELIHLLNGEIKVESIYGQGS 468

Query: 803 LIEIIFP 809
                FP
Sbjct: 469 TFTAKFP 475


>gi|57866958|ref|YP_188631.1| sensor histidine kinase SrrB [Staphylococcus epidermidis RP62A]
 gi|57637616|gb|AAW54404.1| sensor histidine kinase SrrB [Staphylococcus epidermidis RP62A]
          Length = 589

 Score =  281 bits (719), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 66/354 (18%), Positives = 147/354 (41%), Gaps = 32/354 (9%)

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           ++L +  +G+  IN +  I+ +N+    +  +             ++  +   +   +  
Sbjct: 262 TLLNSMVEGVLGINNQREIILSNKMADDIMRH-------------IDDFSKESIEQQIEA 308

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575
                  + LE            +S  I   +    S   + + D++             
Sbjct: 309 TFESQQNEYLELEINTRYY--VFISSYIDRIQTNGRSGIVMVIRDMT------------- 353

Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
                    K DF+A VSHE+RTP++ + G++E I +            +    +     
Sbjct: 354 -NEHNLDQMKKDFIANVSHELRTPISLLQGYTESIVDGIVTE--PDEIRDSLAIVLDESK 410

Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695
            +  +VN+LL+++++++  +++  E   +   + +  S  ++ + E  + +     N+  
Sbjct: 411 RLNRLVNELLNVARMDAEGLSVEKELQPIQHLLDKMESKYRMQSEELGLTMTFDSNNDEQ 470

Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755
               D+  + Q+  N++ NA  +T +G  I IS     ++  IL + DTG G+    L++
Sbjct: 471 LWNYDMDRMDQVLTNLIDNATRYTQAGDSIKISID-EDSDFNILTITDTGTGIAPEHLKQ 529

Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
               F ++  +++   +GTGLGL + K +++ + G+  + S   KGT   I  P
Sbjct: 530 VFDRFYKVDAARKRGKQGTGLGLFICKMIIEEHGGRIDVESELGKGTSFIIRLP 583


>gi|27468093|ref|NP_764730.1| staphylococcal respiratory response protein SrrB [Staphylococcus
           epidermidis ATCC 12228]
 gi|251810908|ref|ZP_04825381.1| histidine kinase [Staphylococcus epidermidis BCM-HMP0060]
 gi|282876083|ref|ZP_06284950.1| sensor protein SrrB [Staphylococcus epidermidis SK135]
 gi|293366548|ref|ZP_06613225.1| sensor histidine kinase SrrB [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|27315639|gb|AAO04774.1|AE016748_8 staphylococcal respiratory response protein SrrB [Staphylococcus
           epidermidis ATCC 12228]
 gi|251805588|gb|EES58245.1| histidine kinase [Staphylococcus epidermidis BCM-HMP0060]
 gi|281295108|gb|EFA87635.1| sensor protein SrrB [Staphylococcus epidermidis SK135]
 gi|291319317|gb|EFE59686.1| sensor histidine kinase SrrB [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329725412|gb|EGG61895.1| sensor protein SrrB [Staphylococcus epidermidis VCU144]
 gi|329735207|gb|EGG71499.1| sensor protein SrrB [Staphylococcus epidermidis VCU045]
 gi|329737238|gb|EGG73492.1| sensor protein SrrB [Staphylococcus epidermidis VCU028]
          Length = 588

 Score =  281 bits (719), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 66/354 (18%), Positives = 147/354 (41%), Gaps = 32/354 (9%)

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           ++L +  +G+  IN +  I+ +N+    +  +             ++  +   +   +  
Sbjct: 261 TLLNSMVEGVLGINNQREIILSNKMADDIMRH-------------IDDFSKESIEQQIEA 307

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575
                  + LE            +S  I   +    S   + + D++             
Sbjct: 308 TFESQQNEYLELEINTRYY--VFISSYIDRIQTNGRSGIVMVIRDMT------------- 352

Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
                    K DF+A VSHE+RTP++ + G++E I +            +    +     
Sbjct: 353 -NEHNLDQMKKDFIANVSHELRTPISLLQGYTESIVDGIVTE--PDEIRDSLAIVLDESK 409

Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695
            +  +VN+LL+++++++  +++  E   +   + +  S  ++ + E  + +     N+  
Sbjct: 410 RLNRLVNELLNVARMDAEGLSVEKELQPIQHLLDKMESKYRMQSEELGLTMTFDSNNDEQ 469

Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755
               D+  + Q+  N++ NA  +T +G  I IS     ++  IL + DTG G+    L++
Sbjct: 470 LWNYDMDRMDQVLTNLIDNATRYTQAGDSIKISID-EDSDFNILTITDTGTGIAPEHLKQ 528

Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
               F ++  +++   +GTGLGL + K +++ + G+  + S   KGT   I  P
Sbjct: 529 VFDRFYKVDAARKRGKQGTGLGLFICKMIIEEHGGRIDVESELGKGTSFIIRLP 582


>gi|315125214|ref|YP_004067217.1| sensor protein [Pseudoalteromonas sp. SM9913]
 gi|315013727|gb|ADT67065.1| sensor protein [Pseudoalteromonas sp. SM9913]
          Length = 896

 Score =  281 bits (719), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 79/247 (31%), Positives = 133/247 (53%), Gaps = 8/247 (3%)

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           L   K+ A++ S+ KS FLA +SHEIRTP+  I G   +   Q+       +   Y    
Sbjct: 513 LRQEKQKADEASAIKSQFLANMSHEIRTPINGIKGMHYLALQQQ----DWQQAKGYIEQA 568

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
           D + +++L ++ND+LD SK+E+GK+ L  EPV+L +   + + L+Q     K + ++  +
Sbjct: 569 DGALSVLLRVLNDVLDFSKMEAGKLELMQEPVNLKQLAEDIVGLMQFEVESKSLSLKLEY 628

Query: 691 ANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749
            ++   IL  D   +KQI LN+L+NA+ FT  G  I +     S++     V DTG+G++
Sbjct: 629 DSDAHLILNTDPIRLKQILLNLLNNAVKFTAKG-CITLKI-WQSSKMTYFSVNDTGIGIS 686

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +   ++  KPF Q  +S   +  GTGLGL + K +V+   G   + S+   G+      P
Sbjct: 687 SAAQKQLFKPFSQADSSTSRQYGGTGLGLSICKKLVELMGGAIDLKSSEGHGSTFTFSLP 746

Query: 810 LYDTSHP 816
           ++ +S P
Sbjct: 747 VH-SSLP 752


>gi|223939259|ref|ZP_03631140.1| Hpt sensor hybrid histidine kinase [bacterium Ellin514]
 gi|223892091|gb|EEF58571.1| Hpt sensor hybrid histidine kinase [bacterium Ellin514]
          Length = 844

 Score =  281 bits (719), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 79/282 (28%), Positives = 128/282 (45%), Gaps = 23/282 (8%)

Query: 545 IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
           + +L     Y        +  ++   L    +  E+ +  KS+FLA +SHE+RTP+  +I
Sbjct: 147 LGQLQRDEAYQALRESQKQLVEKNASLVALNQKLEEATLAKSEFLANMSHEVRTPMNGVI 206

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           G + ++ +            EY      S + +L I+ND+LD SKIESGK++L   P  L
Sbjct: 207 GMTALLLDTEL----TDEQREYVEATRSSADAMLTIINDILDFSKIESGKLDLESHPFEL 262

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG 723
              + EA+ L+   A EK + +  S  + IP+IL  D+  ++QI +N++ NA+ FT  G 
Sbjct: 263 HTCIEEALDLLAPKAAEKDLDLAYSVDDAIPKILVGDVTRLRQILVNLIGNAVKFTNEG- 321

Query: 724 QIIISTTHTSNE-----------------EVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
           ++ I                          +   VRDTGVG+   +  +  K F Q+  S
Sbjct: 322 EVFIQVKPAPKHFNDRDRSASSITGPDMWMLQFSVRDTGVGIPIDKQHRLFKSFQQVDAS 381

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
                 GTGLGL + K + +   G   + S   KG+      
Sbjct: 382 TTRHYGGTGLGLAICKKLSELMGGDIQVESDAGKGSTFHFTI 423


>gi|308271006|emb|CBX27616.1| hypothetical protein N47_H24380 [uncultured Desulfobacterium sp.]
          Length = 575

 Score =  281 bits (719), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 69/357 (19%), Positives = 154/357 (43%), Gaps = 30/357 (8%)

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           ++E    G+  ++    I S N A   +   P  +++ K     L +     + + +T  
Sbjct: 239 LVENMPIGLIAVDGNRKIASFNSAAGSILSLPFPEVIGKKIKEVLPE----GLLNLITGA 294

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLS 572
            +      +    + +    +++ L + +  L   +     + +   D+SE +  + +++
Sbjct: 295 QNQSGAAEINIDCVLN--NGRIIPLEVGVSILKDENANFIGHIILFKDLSEVQSLRREVA 352

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
            ++++A   S       A ++HEIR PL++I G +                 + A  + +
Sbjct: 353 RSQRLASLGS-----LAAGIAHEIRNPLSSIKGLATYFIEHN----EKEEDKDIAKIMIQ 403

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
             + +  +V+ L+++++     +++  +P  L   + ++I L++  A EK I I      
Sbjct: 404 EVDRLNRVVSQLVELARP----VSISKKPAPLKSVIEDSIKLLKREALEKNIKITIHIPP 459

Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752
              +I  D   + Q+ LN+  NAI     GG++ +  +      + ++V DTG G+   +
Sbjct: 460 EEIQIALDKDRITQVLLNLYLNAIESMEKGGRLSVDVSKKDKGAI-IKVSDTGSGIKKED 518

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           L     P+    ++      GTGLGL +   +++A+ GK  + S P + T+  I  P
Sbjct: 519 LALVFDPYFTTKST------GTGLGLAIVYNIIEAHGGKITVQSRPGQETVFTIFLP 569


>gi|170740792|ref|YP_001769447.1| integral membrane sensor signal transduction histidine kinase
           [Methylobacterium sp. 4-46]
 gi|168195066|gb|ACA17013.1| integral membrane sensor signal transduction histidine kinase
           [Methylobacterium sp. 4-46]
          Length = 512

 Score =  281 bits (719), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 105/247 (42%), Positives = 154/247 (62%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E +Q K     A++ AE+ +  KS FLA +SHE+RTPL AI+GFSEV+KN+ FGP  +P 
Sbjct: 240 ELEQAKANSDEARRRAEEANLAKSRFLATMSHELRTPLNAILGFSEVMKNEVFGPHASPS 299

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
           Y EY+  I  SG  +L+++N++LD+S+IE+G+  L+ E V L   V E   ++ L A  K
Sbjct: 300 YQEYSTDIHESGLHLLNLINEILDLSRIEAGRYELNEEAVQLAYVVEECRHMMGLRARAK 359

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
               R     ++PR+ AD R+V+QI LNILSNAI FTP GG+I I    TS+    + ++
Sbjct: 360 NQNFRELVDPSLPRLWADERAVRQIVLNILSNAIKFTPPGGEITIKVGWTSSGGQYVSIK 419

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG G+   E+   M  FG+   + +   +G+GLGLP+ K +VD + G F + S P +GT
Sbjct: 420 DTGPGIPEDEIPTVMSSFGRGSLAIKTAEQGSGLGLPIVKGLVDLHGGGFQLKSKPREGT 479

Query: 803 LIEIIFP 809
            + + FP
Sbjct: 480 EVIVTFP 486


>gi|262384786|ref|ZP_06077918.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
 gi|262293502|gb|EEY81438.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
          Length = 571

 Score =  281 bits (719), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 83/392 (21%), Positives = 179/392 (45%), Gaps = 30/392 (7%)

Query: 424 FPENMPQNGIEPEDVD-TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
                  N +     +  +     +      + +I+ + ++ I  ++R+  IL  N    
Sbjct: 201 EGVAKSFNRMAERLTEYRKSTLADIIQGKKYIEAIVNSITEPIIGLDRDRKILFANNEAL 260

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
            +     E+++ K  +    +N   ++   + E++    ++  E + + +  +E    ++
Sbjct: 261 TILNLKRENVIGKSASELSLRND--LLRRLVRELIQPGEKK--ESLKIYADNKESYFQVQ 316

Query: 543 IIIKKLPFSS------CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
            I  ++  +          + + +I+E+K              +  S K+ F++ +SHE+
Sbjct: 317 YIPIRVLENGEAEVYVGDVILLKNITEFK--------------ELDSAKTTFISTISHEL 362

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           +TP++AI+   +++++ R G + N      A  I  S N +L+I ++LL ++++E+GK+ 
Sbjct: 363 KTPISAIMMSLKLLEDARVGAM-NDEQKALAESIKESSNRLLEITSELLKMTQVEAGKLQ 421

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716
           L+ +     E +  AI   Q+ A+     I   +   I ++  D   +  +  N+LSNAI
Sbjct: 422 LNPKITKPIELIEYAIKANQVQADRFNCHIEVEYPEKISKLFVDSEKIAWVLTNLLSNAI 481

Query: 717 HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
           H+TP  G+III         V + V+D G G+     +     + ++P +   + +G+GL
Sbjct: 482 HYTPENGRIIIG-ARQQGHSVEIYVQDFGKGIDPRYHQSIFDRYFRVPGT---KVQGSGL 537

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           GL ++K  V+A+ G   + S   KG+   I F
Sbjct: 538 GLAISKDFVEAHGGTLSVDSAVGKGSTFVIKF 569


>gi|153004892|ref|YP_001379217.1| histidine kinase [Anaeromyxobacter sp. Fw109-5]
 gi|152028465|gb|ABS26233.1| histidine kinase [Anaeromyxobacter sp. Fw109-5]
          Length = 927

 Score =  281 bits (719), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 97/624 (15%), Positives = 215/624 (34%), Gaps = 40/624 (6%)

Query: 213 GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ 272
              S  +   D F    P         + +     +    ++  E   L T   + L   
Sbjct: 313 ALFSGARVDADTFVLTLPMFRREEALTLFAFIGGLSAGTGMVIVETIALSTMVCNDLVMP 372

Query: 273 EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP 332
                 +L     +   G L +  + +   +    +       +    +    +    + 
Sbjct: 373 VLLRMRSLRLNEWRDVSGLLLSIRRLAIGAILLLGYAYFRVAGEAYALVAIGLISFAAVA 432

Query: 333 FFV------------YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
            F                G     +  F +      +     +G L     +  L     
Sbjct: 433 QFAPAILGGIYWRGGTRAGAFAGLSAGFAVWAYTLLLPSFAKSGWLPASFLSEGLLGVAL 492

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
           +KP  L+             H + W+   ++ +       +        Q  +  +  + 
Sbjct: 493 LKPQQLFGLTG----MDEIPHALFWSMLANVGLYVAVSVASRPGVSETSQAALFVDVFER 548

Query: 441 RIN--KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
                + ++        S+ +            G  L   RA      Y     +     
Sbjct: 549 THAFDRSRLWRGSA---SVQDLLP-------LTGRFLGPERAREAFLAYARRRGVGSLEA 598

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM 558
           +  + +        L   +     + L    +          L  ++  L  +S      
Sbjct: 599 LPADADLVHFAETQLAGAIGGASARVLVASVVQEEPLG----LDEVMDILDEASQVRAYS 654

Query: 559 HDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
            ++ +  +       +L  A    ++    K +F++ V+HE+RTPLT+I  FSE++++  
Sbjct: 655 RELEQKSRALETASAELRAANAQLQELDRMKDEFMSSVTHELRTPLTSIRAFSEILRDDP 714

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
             P+     + +   I +    +  +++ LLD++KIESG    H   + + EA+ +++  
Sbjct: 715 KAPI--AERVRFLAIIVKESERLTRLIDQLLDMAKIESGNAEWHAAELDVREAIQDSVEA 772

Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
                 +  + +  +     PR+ AD   + Q+ +N+LSNA+ F P GG++ +       
Sbjct: 773 TSQLFRDSGVELAVALQPA-PRVRADRDRLVQVIMNLLSNAVKFCPRGGRVEVRLAPAPE 831

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
             V + V+D G G++  + +   + F Q+ ++   +  GTGLGLP+++ +V+   G+ ++
Sbjct: 832 G-VRVDVQDDGPGISPADQDIIFEKFRQVSDTLTGKPRGTGLGLPISRRIVEHFGGRLWV 890

Query: 795 FSTPAKGTLIEIIFPLYDTSHPHD 818
            S   +G     + PL   +   +
Sbjct: 891 ESELGRGATFSFVLPLDAAAQAAE 914


>gi|15806193|ref|NP_294898.1| sensory box sensor histidine kinase [Deinococcus radiodurans R1]
 gi|6458911|gb|AAF10744.1|AE001966_6 sensory box sensor histidine kinase [Deinococcus radiodurans R1]
          Length = 1131

 Score =  281 bits (719), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 100/780 (12%), Positives = 230/780 (29%), Gaps = 77/780 (9%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
             D  G ++ ++  + +     A +++G  L  +          H+   L  + ++   TT
Sbjct: 375  TDDQGRVRLVNRAMAEQFRTPANELVGHPLTML----------HVDRRLDDRASFQSITT 424

Query: 149  LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
             +     + +         +  +NR         +V             +  +++   + 
Sbjct: 425  PYQRSDGSRFYGEAQRNEVLGPQNRLLGHLE---VVRDVSERVAADQALRDEERRSRAIL 481

Query: 209  EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
            +       V   + +I    +       +  V S  +        L   +  +  S   S
Sbjct: 482  DTIPHMLWVSGPQGEITYVNTQHREQLGELGVRSRLDPADVPAYDLMWHEAYIHLSTARS 541

Query: 269  LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG----ENLTPE 324
               Q         +   +     L +   ++ E+++           +      E     
Sbjct: 542  -TVQIRVGPDGEERRWFEVRVAPLLDEDGQAREWVASATDIHDRLLAERDAQTNEARYRG 600

Query: 325  TVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTL------LDAPKLSD 377
             V+  P   ++    G   Y N  +      ++  D+  A                  S 
Sbjct: 601  VVEGMPQIVWLADPQGQATYFNRRWEEYVGPQAGTDLIAALHPDDREDYRLRWAQAISSG 660

Query: 378  NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
                    L            R   I+ ++   L          +          +  + 
Sbjct: 661  RPFEAEHRLRNELGEYRTFVTRGLPIRGSQGEVLEWVGT-TTDVDDSVYAENAARLLADV 719

Query: 438  VDTRINKRK--MEIEVMQLCSILEA---------------------TSDGI-------AI 467
             +  + +    +     +  ++LE                      + DG+         
Sbjct: 720  TEALVVRAGDPLAQRRERYEAVLELVMSRLMEAGTIWTLARPGEEPSPDGVELTELASCA 779

Query: 468  INREGI---ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS--LDLR 522
             N +     I+ T R +++      E        +         +   L  +      + 
Sbjct: 780  SNPDWRLPHIVQTVRVLAQRVAQTREPEYVLTHPLLHAVEVSGGVLQPLVGMDGTVHGVL 839

Query: 523  QTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQ-----EKNKLSHAKKI 577
                +  L     E +  +   +     +        D     +      + ++      
Sbjct: 840  GLAHRHPLHDRDHELIFEIASRLTTALENDTLREQATDAQHELRQLNQSLEERVQRRTLE 899

Query: 578  AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
             E+ +     F   VSH++RTPL  I+GF ++++      L       Y   I  +   +
Sbjct: 900  LEEANRELEAFSYSVSHDLRTPLRHIVGFGDLLRKDSAEALSPKSQR-YLGVITDAAGRM 958

Query: 638  LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697
              +++ LL+ S++  G+  L   PV L E V      ++     + + +       +P++
Sbjct: 959  SGLIDSLLEFSRM--GRQPLRLVPVDLTELVERVWQNLEPDRQGREVRLTLR---PLPQV 1013

Query: 698  LADLRSVKQIALNILSNAIHF--TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755
              D   ++ +  N+LSNA+ +  T    Q+ +           + V D GVG      +K
Sbjct: 1014 PGDPALLELVFQNLLSNALKYSRTREVAQVTV-AASEDGGAARITVTDNGVGFDPKYTDK 1072

Query: 756  AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
                F ++   +    +G G+GL   + +V  + G+    S P +G    ++ PL     
Sbjct: 1073 LFGVFQRLH--RAEEFDGIGIGLANVRRIVTRHGGQVSGSSVPGEGATFTVVLPLRQEQE 1130



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 50/434 (11%), Positives = 130/434 (29%), Gaps = 36/434 (8%)

Query: 173 REFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP 232
              + F    +       +          + FS   ++ + +S V+   +  +S+    P
Sbjct: 56  GRINDFGKLLVATRAFWLSQADPPTPSRFRSFSAGLDLGERYSDVQALGFVRWSETRLTP 115

Query: 233 HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL 292
                + +S L       D  +            + +      + +NL       Y   L
Sbjct: 116 PRLSPSSLSPLRPDVP--DGGIAIFPLQTKQPYRAPIQFIAPPNAVNLRALGFDMYSEPL 173

Query: 293 QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPS----- 347
           +  + +S    S  +          G N TP++     +P +  + G+            
Sbjct: 174 RRAAMDSGRLSSEMHATYPLHLVQGGVNGTPQSGFLLFMPVWRAADGSAAQPGQGQLLGF 233

Query: 348 -FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI------------ 394
            +L +   + V  ++ + G         L+    +    L  +    +            
Sbjct: 234 VYLAIRSAEFVQSLDESYGHDRPTSRILLAGRPLLGEEGLSPAAPGLVAQPPLQLAGQTW 293

Query: 395 ------AASARLHTIQWNRENSLAMTFIPFEKAN--QFPENMPQNGIEPEDVDTRINKRK 446
                  A+     + W       +  +    A      + + +   E  + +    +R+
Sbjct: 294 QVSYAPPATFASEPLNWLSPLLALLGLVASGGAFLISRAQVVARESAEAANRELSELERR 353

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
            +    +  +I  A  D  A  + +G +   NRA+++ F  P  +++  P T+       
Sbjct: 354 QQQARAEFEAIFHAMQDAAAFTDDQGRVRLVNRAMAEQFRTPANELVGHPLTML--HVDR 411

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQ 566
            + +    + ++   +++      G  +  ++L              +   + D+SE   
Sbjct: 412 RLDDRASFQSITTPYQRSDGSRFYGEAQRNEVL------GPQNRLLGHLEVVRDVSERVA 465

Query: 567 EKNKLSHAKKIAEK 580
               L   ++ +  
Sbjct: 466 ADQALRDEERRSRA 479


>gi|157364230|ref|YP_001470997.1| histidine kinase [Thermotoga lettingae TMO]
 gi|157314834|gb|ABV33933.1| histidine kinase [Thermotoga lettingae TMO]
          Length = 488

 Score =  281 bits (719), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 77/371 (20%), Positives = 156/371 (42%), Gaps = 34/371 (9%)

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
                +E  +  +  I  +    + +++        N   S L          +      
Sbjct: 146 KQHEVVEETMRYMQQIFNSFPQMVVVLDSNL-----NPVFSNL----------QYIHHQK 190

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDI 561
           + +    +    + +L+  +RQ +E         E   S+     +        +T+ D+
Sbjct: 191 DSDLVKTIEKVASTVLTTKMRQIIEVEL-----NESFYSIIAENVEYEDQPQVLITITDV 245

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           +  K+ +                K+DF+A VSHE+RTPLTAI  ++E I       +   
Sbjct: 246 TNTKELEK--------LRAADRLKTDFIATVSHELRTPLTAIKAYTETILADP-ESMDKD 296

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
               +   + +    +  ++++LLD +K+E   M L      L E + + I  +  +A  
Sbjct: 297 TLTGFLQIVYKESLHLESLLDELLDFAKLEQKAMVLEKSKFDLTELIMQVIQSMSEFARS 356

Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ---IIISTTHTSNEEVI 738
           K++ ++    +    I+AD + ++Q+ +N++SN I ++        + +S   T  + VI
Sbjct: 357 KKVKLQC-VKSKPIYIVADQKRIRQVLINLISNGIKYSKEEASEKYVKLSAE-THQDSVI 414

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           + V D G+G+      K  + F +  +    R EGTGLGL ++K +V+ + G+ +  S P
Sbjct: 415 ISVADNGIGIEKQHQNKIFEKFFRADSVFDYRTEGTGLGLAISKEIVELHGGQIWFESKP 474

Query: 799 AKGTLIEIIFP 809
            +GT+  +  P
Sbjct: 475 HEGTVFYVKIP 485


>gi|120611809|ref|YP_971487.1| PAS/PAC sensor hybrid histidine kinase [Acidovorax citrulli
           AAC00-1]
 gi|120590273|gb|ABM33713.1| PAS/PAC sensor hybrid histidine kinase [Acidovorax citrulli
           AAC00-1]
          Length = 750

 Score =  281 bits (719), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 95/600 (15%), Positives = 187/600 (31%), Gaps = 55/600 (9%)

Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302
           L       D    +   P   + E + P  +           +      +        E 
Sbjct: 9   LLPPDPEDDRGTASGSGPAGPAGEPAGPPGDGGDNRRQPGRPEGPVAALIAELRAYQAEL 68

Query: 303 LSHRNHPSLS-AYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDD- 359
                    S A  +             P+   V      +  AN       +    D  
Sbjct: 69  EVQNKVLRYSQAAAESASERFETLFASVPLALMVLDEHDMVVQANSMAHRCFQPTESDRP 128

Query: 360 ---------IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS----ARLHTIQWN 406
                       A  +    +  +   +     V+    D           AR+   Q +
Sbjct: 129 LTSLMPFVSAADAARVRATFEQARDHGHGEASEVVFPIGDGDAGIIGDLYIARIEAPQAD 188

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
                          +Q P    +  ++      +    ++     +L +++ +  D I 
Sbjct: 189 GAPEQWQFLCAVV--DQGPLVAERRALQQSATALQERNVQLYASERRLEAVINSALDAII 246

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
            +++   I   N   + LF     D L  P   FL     ++    L     L       
Sbjct: 247 CVDQNQRITVFNPTAAALFQCATADALGSPLDRFLPDAVQALTFAQLATQAVLG------ 300

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM--HDISEWKQEKNKLSHAKKIAEKE--S 582
              +  T   K L++ + +     +   + T+   D++  K+ +   +  +    +    
Sbjct: 301 -EMVALTASGKELAVEVSVSFERHAEGETTTVFARDLTGRKKAEAHRNELEAQLRESHKM 359

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
                    ++H+    L+AI+G  E+ K            +E    I+++G    D+V 
Sbjct: 360 QAVGTMAGGIAHDFNNILSAILGNVELAKADCAAGSP---VLESLREIEKAGRRARDLVR 416

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702
            +L  S+ E          V + EA+ +   L+++      I +R     ++P +LAD  
Sbjct: 417 QILTFSRNE----PPRRTAVPVAEAIHDTERLLRVTLPPA-IELRLQLDRHLPAMLADAT 471

Query: 703 SVKQIALNILSNAIHF-TPSGGQIII-------------STTHTSNEEVILRVRDTGVGM 748
            V+Q  LN+ +NAIH    + G + +                    E V + V D G G+
Sbjct: 472 QVEQALLNLCTNAIHAIGDARGTVCVEASAVQPDHRLCERLALPHGEYVAISVVDNGPGI 531

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
                 +  +PF          G+GTGLGL +   ++  + G   + S P +G+   + F
Sbjct: 532 DPATQLRIFEPFFTTKP----VGQGTGLGLAVVHGVMRTHGGAVDVQSAPGEGSRFTLFF 587



 Score = 46.9 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 25/280 (8%), Positives = 65/280 (23%), Gaps = 13/280 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D +  +   +              +G  L    D    D    +           G+  
Sbjct: 248 VDQNQRITVFNPTAAALFQCATADALGSPL----DRFLPDAVQALTFAQLATQAVLGEMV 303

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                G  L V + ++        R   G                 A    L+ +    H
Sbjct: 304 ALTASGKELAVEVSVSF------ERHAEGETTTVFARDLTGRKKAEAHRNELEAQLRESH 357

Query: 209 EIKKGHSSVEKEKYDIFSQQSP---PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
           +++   +      +D  +  S       L   +  +      + ++      +   L  +
Sbjct: 358 KMQAVGTMAGGIAHDFNNILSAILGNVELAKADCAAGSPVLESLREIEKAGRRARDLVRQ 417

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
             +    E      +           L   +      L  +    L A   +   +    
Sbjct: 418 ILTFSRNEPPRRTAVPVAEAIHDTERLLRVTLPPAIELRLQLDRHLPAMLADATQVEQAL 477

Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365
           ++ C                 +  +   ++  + + +  G
Sbjct: 478 LNLCTNAIHAIGDARGTVCVEASAVQPDHRLCERLALPHG 517


>gi|1825465|gb|AAD12184.1| utilizing regulatory protein tutC [Thauera aromatica]
          Length = 979

 Score =  281 bits (719), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 87/397 (21%), Positives = 165/397 (41%), Gaps = 20/397 (5%)

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQL-CSILEATSDGIAIINREGIILSTNRAVSKLFG 486
           +       +          ++    +L   +L+   + + +++ +G  L  N+A     G
Sbjct: 11  ISAVLRVRDVTLR--AVDDLQTYREKLARVVLDGLYEFVGLLDAKGNTLEINQAALDGAG 68

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK---ITLGSTKEEKLLSLRI 543
             +EDI  KPF                 ++++        +      G    E+ + +  
Sbjct: 69  TRLEDIRDKPFWEARWWQVSRETQEEQRKLIARASAGEFVRCDVEIYGRASGEETIVVDY 128

Query: 544 IIKKLPFSSCYSLTM----HDISEWKQEKNKLSHAKKIAE-------KESSHKSDFLARV 592
            I  +   +   + +     +I++ K  + +L+   +  +       +    K++F A +
Sbjct: 129 SILPIRDCNGKVVFLLPEGRNITDKKLAEAELARKNEELQHLLEKIRQLDEAKNEFFANL 188

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHE+RTPL+ I+G  E +        G  R     + I R+   +L  VNDLLD++K+++
Sbjct: 189 SHELRTPLSLILGSVESLLADSGDYSGVQRVD--LDVIQRNAITLLKYVNDLLDLAKLQA 246

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712
            K+ LH+  V L        +  +  A  K +      A        D+   ++I LN+L
Sbjct: 247 EKLQLHYSRVDLAAVTRMICAHFEALAEYKCLSYVID-APAFMEAEVDVEKYERIVLNLL 305

Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           SNA  F+P GG+I  S + T    ++L ++D+G G+   +  +    F Q  + +  +  
Sbjct: 306 SNAFKFSPDGGRIRCSLSATGTGRILLSIQDSGPGIPADQQSEIFGRFRQGGDIKSRQFG 365

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GTGLGL + K  V  + G   +   P  G L +I  P
Sbjct: 366 GTGLGLTIVKDFVCLHGGVVVVSDAPGGGALFQIELP 402



 Score =  248 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 89/613 (14%), Positives = 216/613 (35%), Gaps = 34/613 (5%)

Query: 220 EKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTIN 279
               +    +P      + ++        + + V K  +    + + S+   +      +
Sbjct: 381 HGGVVVVSDAPGGGALFQIELPRNAPSGVYVNAVAKAGELSPTSFDISAWGLEGRSEWTS 440

Query: 280 LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG 339
               + +     +++N                 +   +GE    E +   P    +    
Sbjct: 441 AEGASDRPRILIVEDNVDMRCFIGRVLIDEYQISVAADGEQAL-ELITSSPPDLVITDLM 499

Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399
               +    +   + +          LS   D        A           +     AR
Sbjct: 500 MPKVSGQLLVKEMRSRGDLANVPILVLSAKADDGLRIKLLAESVQDYVVKPFSATELRAR 559

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459
           +  +   +    A+      +++   +   Q  I     + + +   ++    +  ++ E
Sbjct: 560 VRNLVTMKRARDALQRALDSQSDDLSQLTRQ--IIDNRQELQRSHDALQESESRWRAVYE 617

Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL 519
            ++ GI + N +G+ILS N+A  K+ GY  +++     +  + ++    +   ++ ++S 
Sbjct: 618 NSAAGIVLTNLDGLILSANQAFQKMVGYAEDELRVIEISDLVPEHDREKIRSRVSNLISG 677

Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPF----SSCYSLTMHDISEWKQEKNKLSHAK 575
            +    +       K+ +++   +    +P     S        DI+E  Q + +L+ A+
Sbjct: 678 RVD-DYQVQRQCRRKDGRMMWANVRASLIPGLANQSPMVVRIFDDITEKIQTEAELARAR 736

Query: 576 KIAEKESS--HKSDFLARVSHEIRTPLTAII----GFSEVIKNQRFGPLGNPRYIEYANY 629
           +   +        +  A ++HE+  PL AI+         + ++    L     +E    
Sbjct: 737 EKLTRVMRVTAMGELAASIAHELNQPLAAIVTNGHASLRWLGSEPCNLL---EAVEAVRR 793

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I    N   +I+  +    +   G+       V + + V++  ++V   A    I +R  
Sbjct: 794 IIHDANRASEIIKRIRGFLQRGEGR----RSAVDIFQVVADVAAIVSDMARSHCIDMRYQ 849

Query: 690 FANNIPRILADLRSVKQIALNILSNAIHF----TPSGGQIIISTTHTSNEEVILRVRDTG 745
               +  ++AD   ++Q+ LN+  N I          G++ I+ T +    + + V D+G
Sbjct: 850 AVGQLSLVIADKVQLQQVILNLCINGIESIVGGNSERGELSITVTQSDKRFLTVSVHDSG 909

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF--STPAKGTL 803
            G+   E E     F         + EG G+GL +++++++A+ G+  +   ST   G  
Sbjct: 910 PGLAPGEAENVFDAFYT------SKVEGLGMGLAISRSIIEAHGGRLDVLSPSTEG-GCT 962

Query: 804 IEIIFPLYDTSHP 816
                P  + + P
Sbjct: 963 FCFTLPTEEMASP 975



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/173 (12%), Positives = 53/173 (30%), Gaps = 6/173 (3%)

Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDE---GENLTPETVDKCPIPF-FVYSHGNLFYANP 346
           T  N+S      +      +L A  D     E L    +D        + + GN    N 
Sbjct: 2   TSNNSSVSDISAVLRVRDVTLRAVDDLQTYREKLARVVLDGLYEFVGLLDAKGNTLEINQ 61

Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
           + L       ++DI                     + ++   S    +     ++  + +
Sbjct: 62  AALDGAG-TRLEDIRDKPFWEARWWQVSRETQEEQRKLIARASAGEFVRCDVEIYG-RAS 119

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459
            E ++ + +      +   + +          D ++ + ++  +  +L  +LE
Sbjct: 120 GEETIVVDYSILPIRDCNGKVVFLLPEGRNITDKKLAEAELARKNEELQHLLE 172



 Score = 45.0 bits (105), Expect = 0.048,   Method: Composition-based stats.
 Identities = 20/247 (8%), Positives = 74/247 (29%), Gaps = 12/247 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN-HIGDLLKRQ-NTWYGK 146
            +  G +   ++   K +G    ++  + + D+      +     + +L+  + + +  +
Sbjct: 626 TNLDGLILSANQAFQKMVGYAEDELRVIEISDLVPEHDREKIRSRVSNLISGRVDDYQVQ 685

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                 +G  ++  +  + +P  +        +   +V +     +       L +    
Sbjct: 686 RQCRRKDGRMMWANVRASLIPGLAN-------QSPMVVRIFDDITEKIQTEAELARAREK 738

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
           L  + +  +  E           P   + + N  +SL    +   ++L+  +       +
Sbjct: 739 LTRVMRVTAMGELAASIAHELNQPLAAI-VTNGHASLRWLGSEPCNLLEAVEAVRRIIHD 797

Query: 267 SSLPEQ--EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
           ++   +  +           ++      Q  +  +           +   +     L+  
Sbjct: 798 ANRASEIIKRIRGFLQRGEGRRSAVDIFQVVADVAAIVSDMARSHCIDMRYQAVGQLSLV 857

Query: 325 TVDKCPI 331
             DK  +
Sbjct: 858 IADKVQL 864



 Score = 44.6 bits (104), Expect = 0.074,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 56/193 (29%), Gaps = 11/193 (5%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCD-----VSDILHIDPNNHIGDLLKR 139
           F   +DA G   EI++      G     +      +     VS     +    I      
Sbjct: 46  FVGLLDAKGNTLEINQAALDGAGTRLEDIRDKPFWEARWWQVSRETQEEQRKLIARASAG 105

Query: 140 QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199
           +             G    V +D + LPI   N +       G            A    
Sbjct: 106 EFVRCDVEIYGRASGEETIV-VDYSILPIRDCNGKVVFLLPEG--RNITDKKLAEA---E 159

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
           L +K   L  + +    +++ K + F+  S      +   + S+    A   D    ++ 
Sbjct: 160 LARKNEELQHLLEKIRQLDEAKNEFFANLSHELRTPLSLILGSVESLLADSGDYSGVQRV 219

Query: 260 PLLTSEESSLPEQ 272
            L   + +++   
Sbjct: 220 DLDVIQRNAITLL 232


>gi|325917911|ref|ZP_08180084.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas vesicatoria
           ATCC 35937]
 gi|325535891|gb|EGD07714.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas vesicatoria
           ATCC 35937]
          Length = 951

 Score =  281 bits (719), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 100/773 (12%), Positives = 216/773 (27%), Gaps = 81/773 (10%)

Query: 99  SEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNT-WYGKTTLWPIEGTNL 157
           ++     +G      +G  L ++           I        + +          G   
Sbjct: 63  NDAYAPILGPRQPHALGAPLRELWADAWEAVRAPIEAAFVGNASRFEEVPIAMNRYGVPE 122

Query: 158 YVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSV 217
                 +  PIY+ +    G   F + +        +A      ++   L E      + 
Sbjct: 123 DTWWTFSFSPIYADDGSIGGA--FCVTNEVTARMRAQARLADEHERLIRLFEQAPMFMAF 180

Query: 218 EKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT---------SEESS 268
                      +P     + ++            D L+      L          +  + 
Sbjct: 181 LSGPQHRVEFANPCYSRLIGHRDVIGRPLAEALPDALEQGHVRRLDEVYRSGRAYAANAL 240

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESF----EYLSHRNHPSLSAYFDEGENLTPE 324
           + + +        +      +  +            + L   +  SL     E E    +
Sbjct: 241 VYDVQAVPGGPTERRLLDLVYQPIAGADGTVSGIFVQGLDITDRISLERAVREAEVRNRQ 300

Query: 325 TVDKCPIPFFVYSH--GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
            +D       + +   G +   N     +  +   + +     L        ++    + 
Sbjct: 301 ILDSVMDYAIIATDMRGRVTSWNEGARRILGWTEAEMLGQ--SLERTFTPEDVARRQILI 358

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
                    + +     +                      +    +    +  +    R+
Sbjct: 359 EAAAALESGSGMDERWHMR----KSGERFWANGSLMVLREETGVAIGFVKVLRDRTVERL 414

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT---- 498
               +     +L +++ A+S  I     +        +  +L          +P      
Sbjct: 415 ASEALIKSERRLDALVRASSQAIFSATADW-------SALRLHAGNGLLDDGRPANARWQ 467

Query: 499 -VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYS 555
             ++  +  + +   +   +S      LE   L   ++ +   LR +           + 
Sbjct: 468 QEWIHPDDRASLAQAVHAAISDKAALELELRVLDRHQQIRWTLLRAVPLLDADGGIEEWF 527

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKS--------------------DFLARVSHE 595
            T  D+S+ +Q + +L    +  E+    +S                         ++H+
Sbjct: 528 GTASDVSDRRQAEEQLRLLTETLEERVRERSAALLLAEEKLRQSQKMEAVGQLTGGLAHD 587

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
               LT+I    E +   R       R   Y      S      +   LL  S+    + 
Sbjct: 588 FNNLLTSITVGLE-LLQARVEQGKYDRLERYVEMAQTSAARAAALTQRLLAFSR----RQ 642

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715
            L    V +D  +     ++        I ++ + A    ++L D   ++   LN+  NA
Sbjct: 643 TLAPSAVEVDALIHGMREIIS-RTLGPSITLQVTPAPQPWKVLVDAPQLENALLNLCLNA 701

Query: 716 IHFTPSGGQIIISTTHT-------------SNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
               P GG++ IS  +                + V L V+DTG GMT   + K  +PF  
Sbjct: 702 RDAMPDGGRLTISLHNRSLDSAAAQHLDLPPGDYVCLSVQDTGTGMTEEVMSKVFEPFFT 761

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
                   G+GTGLGL +       + G   I S    GT + +  P +  +H
Sbjct: 762 TKP----IGQGTGLGLSMIYGFTRQSGGHVRIDSEVGVGTTMALYLPRFTGTH 810



 Score = 85.8 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/388 (8%), Positives = 101/388 (26%), Gaps = 19/388 (4%)

Query: 79  IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLL 137
               +   +       ++  +    + IG+    +IG  L +         +   + ++ 
Sbjct: 172 EQAPMFMAFLSGPQHRVEFANPCYSRLIGHR--DVIGRPLAEALPDALEQGHVRRLDEVY 229

Query: 138 KRQNTWYGKTTLWPIE----GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193
           +    +     ++ ++    G      +DL   PI   +   SG   F            
Sbjct: 230 RSGRAYAANALVYDVQAVPGGPTERRLLDLVYQPIAGADGTVSGI--FVQGLDITDRISL 287

Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF-----SQQSPPPHLRMKNKVSSLTEYYA 248
               +  + +   + +    ++ +  +            +        +    SL   + 
Sbjct: 288 ERAVREAEVRNRQILDSVMDYAIIATDMRGRVTSWNEGARRILGWTEAEMLGQSLERTFT 347

Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFH-TINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
            +D   +        + ES     E +H   +  ++        L+  +  +  ++    
Sbjct: 348 PEDVARRQILIEAAAALESGSGMDERWHMRKSGERFWANGSLMVLREETGVAIGFVKVLR 407

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
             ++     E    +   +D         S   +F A   +  L  +     ++     +
Sbjct: 408 DRTVERLASEALIKSERRLDALVRA----SSQAIFSATADWSALRLHAGNGLLDDGRPAN 463

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
                  +  ++         +  +  AA      +    +             +     
Sbjct: 464 ARWQQEWIHPDDRASLAQAVHAAISDKAALELELRVLDRHQQIRWTLLRAVPLLDADGGI 523

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLC 455
               G   +  D R  + ++ +    L 
Sbjct: 524 EEWFGTASDVSDRRQAEEQLRLLTETLE 551



 Score = 43.9 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 22/200 (11%), Positives = 59/200 (29%), Gaps = 20/200 (10%)

Query: 454 LCSILE---ATSDGI-AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
           L + ++   ++ + +  +          N A + + G      L  P       +    +
Sbjct: 36  LRNAIDLLLSSPESMYLVWGEALTF-FYNDAYAPILGPRQPHALGAPLRELWA-DAWEAV 93

Query: 510 NHYLTEILSLDLRQTLEKIT---LGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEW 564
              +      +  +  E           E+   +                    ++++  
Sbjct: 94  RAPIEAAFVGNASRFEEVPIAMNRYGVPEDTWWTFSFSPIYADDGSIGGAFCVTNEVTAR 153

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVS---H--EIRTPLTA-IIGFSEVI---KNQRF 615
            + + +L+   +   +       F+A +S   H  E   P  + +IG  +VI     +  
Sbjct: 154 MRAQARLADEHERLIRLFEQAPMFMAFLSGPQHRVEFANPCYSRLIGHRDVIGRPLAEAL 213

Query: 616 GPLGNPRYIEYANYIDRSGN 635
                  ++   + + RSG 
Sbjct: 214 PDALEQGHVRRLDEVYRSGR 233


>gi|317152240|ref|YP_004120288.1| ATPase ATP-binding domain-containing protein [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316942491|gb|ADU61542.1| ATP-binding region ATPase domain protein [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 507

 Score =  281 bits (719), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 76/270 (28%), Positives = 126/270 (46%), Gaps = 22/270 (8%)

Query: 554 YSLTMHDISEWKQEKN---KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
           Y+ T+ D       +    +L  A+K AE  S  KSDFLA VSHEIRTP+ A++G +E +
Sbjct: 202 YASTLRDFLNKHLIETRNVELEVARKAAEAASQAKSDFLAAVSHEIRTPMNAVLGMTEAV 261

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
            +       + R  +Y      S   +LD++ND+LD S+IE+G++ L  E   L   V  
Sbjct: 262 LHTPL----DARQRDYVETARESALHLLDVLNDILDFSRIEAGRLRLVSEDFDLPAVVHS 317

Query: 671 AISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
           A+  V L A +K + +        PR +  D   ++Q+ +N+L N + FT  G  + ++ 
Sbjct: 318 AMKTVGLEAGQKGVALDFEMMEGAPRFLRGDPGRLRQVLINLLGNGVKFTEQGA-VRVTV 376

Query: 730 THTSNEE-------------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
                 +             V   V D+G G+     +   + F Q   +   R  G+GL
Sbjct: 377 GPWDGGQGGESPPDPERPVGVRFSVSDSGPGIPPEFGQAIFEAFRQGDGTTSRRYGGSGL 436

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           GL + + +V    G+  + ST  +G+   +
Sbjct: 437 GLAICRDLVRLMGGEITVRSTVGRGSEFIL 466


>gi|282163958|ref|YP_003356343.1| putative histidine kinase [Methanocella paludicola SANAE]
 gi|282156272|dbj|BAI61360.1| putative histidine kinase [Methanocella paludicola SANAE]
          Length = 779

 Score =  281 bits (719), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 90/739 (12%), Positives = 219/739 (29%), Gaps = 54/739 (7%)

Query: 94  YLKEISEELPKTIG-NYAFKMIGMRLCDVSDILHID-PNNHIGDLLKRQNTW-YGKTTLW 150
            +  I+E   + +G     +++G  L D+    + +   + I  ++  ++     +    
Sbjct: 75  RVAYINEAGARILGAPDPGEVVGKALEDIIHPDYREIVQDRINAMIGSESAVPIVEEKYL 134

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGF-GIVHVNRVDNDPRALGKRLDKKFSHLHE 209
            ++G  + V +       ++    + G      +              K       +  +
Sbjct: 135 RVDGRAVDVDV-------WAMRFTYKGASAILAVFKDITERKRAEEALKLTQFALDNFGD 187

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA-HKDDVLKTEKYPLLTSEESS 268
                +   +  Y   +      + R +     + +    +  + +       +    + 
Sbjct: 188 SAIWVTKDGRLAYVNQAACRSLGYSREELLSMHIWDIDPGYSPEKIWELWPVRMLDHNTK 247

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
                      +        +    +                      E E    +  D 
Sbjct: 248 FESTHVASDGRVFPVEVTSCYTRYGDEEYLITFDRDITERKQAEKVLQESEERFRKVFDN 307

Query: 329 CPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
                 +          N  F  +T Y   + +   G     +  P     +  +   L 
Sbjct: 308 AATGILIADVDRGYQAVNDRFCEITGYSR-EKLLTMGCED--IVHPDDQAMDIAEVQRLV 364

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
           R + +      R          ++          N   E      +  +  + +  +  +
Sbjct: 365 RGEASSF---MRDLRYVHASGRTIWARVNVSLMRNSDHEEPRIIAVIEDITERKQAEGAL 421

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
                +   ++E  +  I   +R+G I   N    + FGY  E+IL +     +   T S
Sbjct: 422 RESKERYRELVENANSIILRADRDGNITYFNEYAQRFFGYTGEEILGRNAIGTIIPATDS 481

Query: 508 VMNHY---LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHD 560
              +    L ++L       +        K  +L+ +    K +              +D
Sbjct: 482 AGRNLAMMLDDLLQHPEAYRMNVH-QNRRKNGELVWISWTNKAIYDDEGNVAGLFSIGND 540

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I+  K  + +L+ A+  AE        +L  + H+I       +G+ E+  N   G    
Sbjct: 541 ITPLKMAEEELNKARVQAEL-------YLDLMGHDINNMHQVALGYLELASNMPPG---- 589

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
                  N           ++ ++  + K   G      + +++   + +          
Sbjct: 590 EEQARLLNKPVEVLQRSARLIQNVRKLQKHREG--VFQTQKINVSRMLVDVQGEYGA-IP 646

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS---TTHTSNEEV 737
            KR+++  +       + A+   +  +  N++SNA+  T     II+          +  
Sbjct: 647 NKRVMLNVNGHEGCI-VRANE-LLHDVFANLVSNAVKHTGDKADIIVGLDIVKDNDRQYC 704

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
            + V D G G+ +   ++       +      +  G GLGL L K++V++  G+ Y+   
Sbjct: 705 RVIVEDDGPGIPDESKDRIFNR--TLKG--TNKARGMGLGLYLVKSLVESYNGRVYVEDR 760

Query: 798 PA----KGTLIEIIFPLYD 812
                 KG    ++ P  +
Sbjct: 761 VNGDHTKGARFVVMLPAIE 779



 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 37/386 (9%), Positives = 100/386 (25%), Gaps = 20/386 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            W     G L  +++   +++G    +++ M + D+      +    +  +    +    
Sbjct: 190 IWVT-KDGRLAYVNQAACRSLGYSREELLSMHIWDIDPGYSPEKIWELWPVRMLDHNTKF 248

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           ++T    +G    V +              +                   + +  +++F 
Sbjct: 249 ESTHVASDGRVFPVEVTSCYTRYGDEEYLIT------FDRDITERKQAEKVLQESEERFR 302

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT---EYYAHKDDVL--KTEKYP 260
            + +       +        +       +   ++   LT   E   H DD      E   
Sbjct: 303 KVFDNAATGILIADVDRGYQAVNDRFCEITGYSREKLLTMGCEDIVHPDDQAMDIAEVQR 362

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ----NNSKESFEYLSHRNHPSLSAYFD 316
           L+  E SS      +   +      +     ++       +                   
Sbjct: 363 LVRGEASSFMRDLRYVHASGRTIWARVNVSLMRNSDHEEPRIIAVIEDITERKQAEGALR 422

Query: 317 EGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
           E +    E V+            GN+ Y N        Y   + +      + +   P  
Sbjct: 423 ESKERYRELVENANSIILRADRDGNITYFNEYAQRFFGYTGEEILGRNAIGTII---PAT 479

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
                   +ML    +   A    +H  +      + +++      +          I  
Sbjct: 480 DSAGRNLAMMLDDLLQHPEAYRMNVHQNRRKNGELVWISWTNKAIYDDEGNVAGLFSIGN 539

Query: 436 EDVDTRINKRKMEIEVMQLCSILEAT 461
           +    ++ + ++    +Q    L+  
Sbjct: 540 DITPLKMAEEELNKARVQAELYLDLM 565


>gi|77359552|ref|YP_339127.1| phosphate regulon sensor protein phoR [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76874463|emb|CAI85684.1| phosphate regulon sensor protein phoR [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 443

 Score =  281 bits (719), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 66/368 (17%), Positives = 143/368 (38%), Gaps = 29/368 (7%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           R  + ++   + +     EA  D + ++  +  I   N+   K+ G        +     
Sbjct: 87  RKKRNELSALIHRFRDGAEAIPDAVIVLQNDLTIYWCNQLALKVLGLQWPTDQGQRLDNL 146

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
           + +   +   H       L+L        +    E +++                + + D
Sbjct: 147 IREPKFAKYMHRGQFTEPLELESGHNIEQIL---EFRVMPYAST--------QLMVVVRD 195

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           ++  KQ +                + DF+A VSHE+RTPLT + G+ E++ +    P   
Sbjct: 196 VTRLKQLE--------------QMRKDFVANVSHELRTPLTVVTGYLEMMDSDMMPP--P 239

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
             + +  N +      +  +V  LL +S+IE  +   + + V++   ++   +       
Sbjct: 240 AMWNKAQNTMLEQCKRMDSLVTQLLSLSRIEGARKQNNDKAVNVPLLLNYIQTEANSINQ 299

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
           +K+  +  +   ++  I      ++    N++ NAIH+T  GG+I I      N+     
Sbjct: 300 QKKHQLIFNIDTSL-DISGSADELRSAFSNLVFNAIHYTKPGGKITICWQ-RQNDRACFS 357

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V D G G+    + +  + F ++  ++     G+GLGL + K ++  +  +  I S   +
Sbjct: 358 VTDNGDGIAPEHINRLTERFYRVDKARSRTTGGSGLGLAITKHVLTRHNSQLKISSVLGQ 417

Query: 801 GTLIEIIF 808
           G+     F
Sbjct: 418 GSCFSFDF 425


>gi|186681986|ref|YP_001865182.1| GAF sensor signal transduction histidine kinase [Nostoc punctiforme
           PCC 73102]
 gi|186464438|gb|ACC80239.1| GAF sensor signal transduction histidine kinase [Nostoc punctiforme
           PCC 73102]
          Length = 595

 Score =  281 bits (719), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 82/260 (31%), Positives = 136/260 (52%), Gaps = 16/260 (6%)

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
              +L  A++ AE+ S  KS+FLA VSHEIRTPL  +IGF ++I              ++
Sbjct: 314 LYEELEVARQKAEEASRLKSEFLANVSHEIRTPLNGMIGFLKLILEGMAD--DPEEQNQF 371

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
                     +L+I+ND+LDI+KIE+GKM L + PV L+E  S+  S ++  A  + +  
Sbjct: 372 LAEAHNLSIHLLNIINDILDIAKIEAGKMELTYAPVKLNELFSDVESFMRPQAEMRNLSF 431

Query: 687 RTSFA--NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST-------THTSN--- 734
           R      ++   + ++ + + Q+ LN+L NAI FT  GG + +S                
Sbjct: 432 RMQMPATSDEIIVQSNYQRLLQVMLNLLGNAIKFTHEGG-VTVSADLVLKKSKLQDQQFP 490

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
             V +RV DTG+G++  + +K  + F Q+  S+  +  GTGLGL +++ +V+A  G+ + 
Sbjct: 491 GLVRVRVADTGIGVSLDKQDKLFQLFSQVDGSRTRQYGGTGLGLAISQKLVEAMGGEVHF 550

Query: 795 FS-TPAKGTLIEIIFPLYDT 813
           +S     G+ +    PLY  
Sbjct: 551 YSLGEGLGSTVTFTVPLYQQ 570


>gi|17228616|ref|NP_485164.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17130467|dbj|BAB73078.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 1932

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 80/373 (21%), Positives = 153/373 (41%), Gaps = 35/373 (9%)

Query: 456  SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
            +  +  ++ IAI+         N   + +     E++L++  ++  E  T         +
Sbjct: 1133 TFFDQLTESIAIV--------LNTIAASM---RTEELLKQSQSLAEELQTQQSELRETNQ 1181

Query: 516  ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK----- 570
             L    +       L      +   L+    +L   +          E K  + +     
Sbjct: 1182 RLEQQAQSLKASEDLLR---GQQEELQQTNAELEEKAELLALQKKEVERKNREIEQARRS 1238

Query: 571  LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
            L    +     S +KS+FLA +SHE+RTPL +++  +  +           + +EY+  I
Sbjct: 1239 LEEKAEQLALSSRYKSEFLANMSHELRTPLNSLLILA-KLLTDNVDSNLTAKQVEYSQTI 1297

Query: 631  DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
              +GN +L ++ND+LD++KIESG M++H  P+ L E   +        A  K +      
Sbjct: 1298 YSAGNELLALINDILDLAKIESGTMSIHATPIPLSELAEQIERGFGQIAQNKGLTFAVEL 1357

Query: 691  ANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE------------- 736
            A  +P  +  D++ ++Q+  N+LSNA  FT  G ++ +                      
Sbjct: 1358 APELPTTVNTDIKRLQQVLKNLLSNAFKFTERG-EVRLRIEVAKPGWNPNQQPLNPAQNV 1416

Query: 737  VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
            +   V DTG+G+   + +   + F Q   +   +  GTGLGL +++ +     G+  + S
Sbjct: 1417 IAFAVSDTGIGIAADKQKIIFEAFQQADGTTSRKYGGTGLGLSISREIAHLLGGEIKLTS 1476

Query: 797  TPAKGTLIEIIFP 809
             P +G+      P
Sbjct: 1477 HPGQGSTFTFYLP 1489


>gi|296822116|ref|XP_002850232.1| two-component sensor protein histidine protein kinase [Arthroderma
            otae CBS 113480]
 gi|238837786|gb|EEQ27448.1| two-component sensor protein histidine protein kinase [Arthroderma
            otae CBS 113480]
          Length = 2349

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 73/251 (29%), Positives = 135/251 (53%), Gaps = 12/251 (4%)

Query: 565  KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
            K  + + +H  K+ E  +  KS FLA +SH++RTP+T +IG SE++K  +     +P+  
Sbjct: 1834 KVAEVEANHNVKLKEDAAKAKSIFLANISHDLRTPMTGVIGLSELLKATKL----DPKQD 1889

Query: 625  EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
             Y   I    + +L ++ND+LD SK+E+GKM +   P++L + ++E +  ++    EK +
Sbjct: 1890 VYVESIRVCADTLLTLINDILDFSKLEAGKMKVSIVPINLRQTIAEVVRALRYTHREKGL 1949

Query: 685  LIRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN--EEVILR 740
                   +  P   ++ D   + QI +N+LSN+  FTP G  + +      +  E++ + 
Sbjct: 1950 ETVEDLDSIDPNLLVMGDPVRLHQIFMNLLSNSYKFTPKGS-VTVQAIVEEDTPEQIRVT 2008

Query: 741  --VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA-NMGKFYIFST 797
              V DTG+G++  +L +  +PF Q  +S      G+GLGL + KA+++    G+ ++ S 
Sbjct: 2009 CKVADTGIGISEEQLVRLFRPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGRIWLQSK 2068

Query: 798  PAKGTLIEIIF 808
              +GT +    
Sbjct: 2069 EGEGTTVTFTL 2079


>gi|241113525|ref|YP_002973360.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium
            leguminosarum bv. trifolii WSM1325]
 gi|240861733|gb|ACS59399.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium
            leguminosarum bv. trifolii WSM1325]
          Length = 1211

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 91/779 (11%), Positives = 224/779 (28%), Gaps = 63/779 (8%)

Query: 79   IPRTVRFTWNIDAHGYLKEISEELPKTI-------GNYAFKMIGMRLCDVSDILHIDPNN 131
                VR  W+++  G     ++              + A   I   L  +          
Sbjct: 453  DAVPVR-IWSVEPTGGSTYFNKRYQDHFRAVIANFDSQAEPRIDELLQQLIHPEDASAVQ 511

Query: 132  H-IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVD 190
              + +  +  +    +      +G  +Y   +    P    +      + +G+      +
Sbjct: 512  RTLRNCFEAGSGSAMRFRWLEKDG--VYRWAECRVEPRRDDDGTVV--QWYGVSLDIDEE 567

Query: 191  NDPRALGKRLDKKFSHLHEIKKGHSSVEKEKY----------DIFSQQSPPPHLRMKNKV 240
                   +  +++ S L ++                      D F            +++
Sbjct: 568  VRALEALRDRERELSQLVDMVPVQIRRLTPGGEPVFFNKRLIDFFGLDVGDMDKPGMSRL 627

Query: 241  SSLTEYYAHKDDV-LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
            SS+     H DD     E      +       +      +            L++ S   
Sbjct: 628  SSVIHTLVHPDDASRLLETVHHSLASGDPFSIKYRMLRFDGAYRWVDGRAEPLRDQSGAI 687

Query: 300  FEYLSHRNHP----SLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKY 354
             ++                  + E    + VD  P   + +   G   + N   +     
Sbjct: 688  MQWYVISVDIDDEMRAQEALRDRERELSQLVDMVPSLLWRLNPEGAPTFFNQRLIDFLGL 747

Query: 355  KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
              VD  +        L    +  ++A                 +  + ++        + 
Sbjct: 748  DIVDTEKPGVSRLAALIEAAVHPDDAAGLERALNHSFATGERFSSQYRLRRADGVYRWVK 807

Query: 415  FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII 474
                   +Q    +   G+  +  D    +  +      L  ++E     I     +G  
Sbjct: 808  GSAEPLRDQSGRIVQWYGLSHDIDDQLRVEEALRERERSLWQLVETLPAMIDCAAPDGEP 867

Query: 475  LSTNRAVSKLFGYPVEDILRK-------PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
            +  ++ +    GY ++++               +  +  + +    +  LS        +
Sbjct: 868  IYRSQQLRDFLGYNLDELDGTGKTRLEGTLDAGVHPDDVAGVKENYSHSLSSGEP--YAR 925

Query: 528  ITLGSTKEEKLLSLRIIIKKLPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESS 583
                   + +   +      +  +        +   DI      +  L  A++   + S 
Sbjct: 926  RHRLRRHDGEYRWVETRAAPMRNAEGVIVQWNVICLDIDGQVHAEEDLRRAREGLARASQ 985

Query: 584  --HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN-PRYIEYANYIDRSGNLVLDI 640
                ++  A ++HE+  PL A++  S   +        N  R       I R  N   D+
Sbjct: 986  VASLAELSASIAHEVNQPLAAVVANSHACQRWLMAEPPNMERAQRTVERIIRDANSAADV 1045

Query: 641  VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILAD 700
            V+ +  + K    +         L   V+E  +L+   A  + + +     + +P I  D
Sbjct: 1046 VSRIRALFKQSVDRRIPST----LSGIVNEVRNLMADEAWRRHVRMEVELDDTLPLIAID 1101

Query: 701  LRSVKQIALNILSNAIHFTPS--GGQIIISTTHTSNEEV-ILRVRDTGVGMT-NYELEKA 756
               ++Q+ +N++ N I    +  G ++ +         +    + D G G+       K 
Sbjct: 1102 RVQIQQVLINLIRNGIEAMDATTGDRV-VEIRVRQIGNILQTEISDRGQGIDFPE---KM 1157

Query: 757  MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
             +PF         +  G G+GL + +++V+ + G+ +       G  +    P+   + 
Sbjct: 1158 FEPFFTT------KENGMGMGLAICRSIVELHGGRLWAEKNNPHGATLLFTLPIETKAA 1210



 Score =  154 bits (388), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 55/534 (10%), Positives = 147/534 (27%), Gaps = 43/534 (8%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMI--GMRLCDVSDILHIDPN------NHIGDLL 137
            W +   G     +  +   +G         GM   +      + P+      + +   L
Sbjct: 326 VWRLTPEGEPTFFNRRMVDFLGLDVADSDRPGMSRLEAVLQATVHPDDTAGFRDALRHCL 385

Query: 138 KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG 197
               ++  +  L   +G  LY  +   A P+  +       + +G+ H            
Sbjct: 386 ATGESFVMRYRLRRADG--LYRWMSSRAEPMRDQAGN--TVQWYGLCHDIDDQMRAEEAV 441

Query: 198 KRLDKKFSHLHEIKKGHSSVEKEKY----------DIFSQQSPPPHLRMKNKVSSLTEYY 247
           +R +++   + +         +             D F         + + ++  L +  
Sbjct: 442 RRSERQLQQMIDAVPVRIWSVEPTGGSTYFNKRYQDHFRAVIANFDSQAEPRIDELLQQL 501

Query: 248 AHKDDVLKTEKY-PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
            H +D    ++         S    +  +   +      +      +++     ++    
Sbjct: 502 IHPEDASAVQRTLRNCFEAGSGSAMRFRWLEKDGVYRWAECRVEPRRDDDGTVVQWYGVS 561

Query: 307 NHP----SLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVD-DI 360
                         + E    + VD  P+    +   G   + N   +        D D 
Sbjct: 562 LDIDEEVRALEALRDRERELSQLVDMVPVQIRRLTPGGEPVFFNKRLIDFFGLDVGDMDK 621

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
                LS+++      D+ +     ++ S  +    S +   ++++      +       
Sbjct: 622 PGMSRLSSVIHTLVHPDDASRLLETVHHSLASGDPFSIKYRMLRFDGA-YRWVDGRAEPL 680

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
            +Q    M    I  +  D    +  +     +L  +++     +  +N EG     N+ 
Sbjct: 681 RDQSGAIMQWYVISVDIDDEMRAQEALRDRERELSQLVDMVPSLLWRLNPEGAPTFFNQR 740

Query: 481 VSKLFGYPVEDI-------LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
           +    G  + D        L       +  +  + +   L    +   R           
Sbjct: 741 LIDFLGLDIVDTEKPGVSRLAALIEAAVHPDDAAGLERALNHSFATGER--FSSQYRLRR 798

Query: 534 KEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESS 583
            +     ++   + L   S   +      HDI +  + +  L   ++   +   
Sbjct: 799 ADGVYRWVKGSAEPLRDQSGRIVQWYGLSHDIDDQLRVEEALRERERSLWQLVE 852



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 42/324 (12%), Positives = 84/324 (25%), Gaps = 16/324 (4%)

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
           PE +  + I L  +     F  L   +      L+            + E    + VD  
Sbjct: 263 PESQKHNQIMLQLFLAISAFSALIVAAISRQHQLAVLTLHQNVETLRDRERELSQLVDMV 322

Query: 330 PIPFF-VYSHGNLFYANPSFLLLTKYKSVD-DIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
           P   + +   G   + N   +        D D      L  +L A    D+ A     L 
Sbjct: 323 PSHVWRLTPEGEPTFFNRRMVDFLGLDVADSDRPGMSRLEAVLQATVHPDDTAGFRDALR 382

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
               T  +   R + ++        M+       +Q    +   G+  +  D    +  +
Sbjct: 383 HCLATGESFVMR-YRLRRADGLYRWMSSRAEPMRDQAGNTVQWYGLCHDIDDQMRAEEAV 441

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-------PVEDILRKPFTVF 500
                QL  +++A    I  +   G     N+     F           E  + +     
Sbjct: 442 RRSERQLQQMIDAVPVRIWSVEPTGGSTYFNKRYQDHFRAVIANFDSQAEPRIDELLQQL 501

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL---- 556
           +     S +   L           +        K+         ++         +    
Sbjct: 502 IHPEDASAVQRTLRNCFEAGSGSAMRF--RWLEKDGVYRWAECRVEPRRDDDGTVVQWYG 559

Query: 557 TMHDISEWKQEKNKLSHAKKIAEK 580
              DI E  +    L   ++   +
Sbjct: 560 VSLDIDEEVRALEALRDRERELSQ 583



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/190 (8%), Positives = 50/190 (26%), Gaps = 13/190 (6%)

Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465
                +   F+     +           +   +    N   +     +L  +++     +
Sbjct: 267 KHNQIMLQLFLAISAFSALIVAAISRQHQLAVLTLHQNVETLRDRERELSQLVDMVPSHV 326

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF-------LEQNTPSVMNHYLTEILS 518
             +  EG     NR +    G  V D  R   +         +  +  +     L   L+
Sbjct: 327 WRLTPEGEPTFFNRRMVDFLGLDVADSDRPGMSRLEAVLQATVHPDDTAGFRDALRHCLA 386

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHA 574
                 +         +     +    + +   +     +    HDI +  + +  +  +
Sbjct: 387 TGESFVMR--YRLRRADGLYRWMSSRAEPMRDQAGNTVQWYGLCHDIDDQMRAEEAVRRS 444

Query: 575 KKIAEKESSH 584
           ++  ++    
Sbjct: 445 ERQLQQMIDA 454


>gi|83309922|ref|YP_420186.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82944763|dbj|BAE49627.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 795

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 97/755 (12%), Positives = 219/755 (29%), Gaps = 58/755 (7%)

Query: 77  DPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL 136
                 VR  + I+A G +   S  LP  +G     +        +    I  +  I   
Sbjct: 77  SAGLPEVRNVFIINADGKVT--SSTLPSMLGL---DLSRRPYFMTAAQTPIHGHLIITP- 130

Query: 137 LKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF------------GIV 184
                      ++ P+ G        + A PI S    F+G                G+V
Sbjct: 131 ----------PSVSPVTGKLG----LVVARPITSPVGTFAGLIAVALNPEFFSGALSGVV 176

Query: 185 H-VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL 243
                        G  L +       +     S      D   +      +   +     
Sbjct: 177 EGDVDRAVVANMDGNVLARLPDPGLHVGSSIRSG-PLFSDYLPKARAGTFIAPSSFDGQD 235

Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303
                   +         +T++ +      +   +                         
Sbjct: 236 RLASYQALNHQPIVVSVGITTQAALRRWTVNTLVMAGIGLLFSTVL-----LGAALQLER 290

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY-ANPSFLLLTKYKSVDDIEI 362
             R            E      VD        Y+        N ++         D +  
Sbjct: 291 RERERRGAETALKASEESYRILVDDQDDLIHRYTQDTTLITVNRAYARFYGQTP-DSLIG 349

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
              +  L       D      +   ++             +       L + +      +
Sbjct: 350 RKWIEFL------PDEERTFSLSCLQALNHIQPYREDRRRVVRPDGQELWIEWRTTALYD 403

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAV 481
                     +  +  D+   ++ +                   +I+   G I   N + 
Sbjct: 404 ALDNLTGYQTVGRDVTDSHRAQQAISEREELYSQSFHRNPAIKLLIDPKSGAITDANDSA 463

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
           +  +GYP + +           +   + +      +  + R+ L      S+ + + + +
Sbjct: 464 ALFYGYPADVLKHMNIQDINVASAAEIEHEM--AAVENEGRKFLRFRHRLSSGDIRDVEV 521

Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
                 +   +  S  + D+S+  + + +L        + ++    F    SH++R PL 
Sbjct: 522 YSSPLHVGGRAYLSSIVVDVSDRNRFEAELQAKTAELARSNAELEQFAYVASHDLRQPLR 581

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
            +  +   +  +  G   +    E+  Y       +  ++  LLD S++  G   L    
Sbjct: 582 MVTSYV-TLLERHLGETLDESSREFIGYTISGVRRMDALIKGLLDYSRVGRGGETL--SD 638

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           + L+E V+++ + + L  +     +       +PRIL     + ++  N++ NA+ +   
Sbjct: 639 LDLEEVVADSCANLGLTGSSDEATVLVEHP--LPRILGISSELIRLFQNLIGNAVKYRHP 696

Query: 722 GGQIIISTTHTSNE-EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
             +  I  +      E I+ V D G+G+     E+    F ++    +   EGTG+GL +
Sbjct: 697 ERKPEIRLSSRRQGNEWIITVEDNGLGIGAEHFERIFGMFQRLHA--EGEFEGTGIGLAI 754

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            + +V  + G+ ++ S    G+   +  P    + 
Sbjct: 755 CRKIVTTHGGRIWVESEEGAGSRFMVALPASRAAA 789


>gi|225181550|ref|ZP_03734992.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Dethiobacter alkaliphilus AHT 1]
 gi|225167798|gb|EEG76607.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Dethiobacter alkaliphilus AHT 1]
          Length = 544

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 78/369 (21%), Positives = 150/369 (40%), Gaps = 32/369 (8%)

Query: 444 KRKMEIEVMQLCS-ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            R+ME E  QL   I      G+  +N  G I   N+    L                  
Sbjct: 201 HREMETEYNQLRDEIFSDLKLGVLTVNVSGKITYMNKTAQNLLHAENHWDT--------- 251

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHD 560
                     L+  L  + R     + +   +  +  S+                    D
Sbjct: 252 -AVTQEFQRLLSGTLHENTRHNQYILNVPFPEGTRYYSVNTAPLLGEDGEVTGAVSVFQD 310

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           ++E K  + ++   +K +        +  A  +HEIR P+T + GF +++  +       
Sbjct: 311 VTEQKILEAEMLQMEKFSLVA-----ELAAGTAHEIRNPMTTMRGFLQILAKEFKSGT-- 363

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
            +  EY   +    +    I+ + L ++K  +     +     L   + E   L++  + 
Sbjct: 364 -KGYEYCELMIEEIDRANAIIKEFLLLTKPAA----PNLRECDLHVILEEIFMLIESKSL 418

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
            + + +   +A ++P + AD   +KQ+ LN+ +NAI   P+GG++ I+T+ + N  V++R
Sbjct: 419 LEDVKLNKRYAKSLPLVEADPAQIKQVFLNLATNAIQAMPAGGELTIATSVS-NGTVVVR 477

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
             DTG G+   +L +   PF         + +GTGLGL ++  +++ + G+ +  STP K
Sbjct: 478 FTDTGCGIEEAQLARLFDPFFTT------KEQGTGLGLTISYRIIEGHRGRLHADSTPGK 531

Query: 801 GTLIEIIFP 809
           GT   +  P
Sbjct: 532 GTTFYVELP 540


>gi|149909264|ref|ZP_01897920.1| putative histidine protein kinase PhoR [Moritella sp. PE36]
 gi|149807581|gb|EDM67529.1| putative histidine protein kinase PhoR [Moritella sp. PE36]
          Length = 432

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 70/411 (17%), Positives = 160/411 (38%), Gaps = 31/411 (7%)

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459
           L+  Q+     L +         +       NGI       +  ++++ + + +     E
Sbjct: 46  LYRSQYVLHKWLWVERSATPPEGKGSWESIFNGIYRLQRRHKRKRKELRMVIRRFREGAE 105

Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL 519
           A  D +  ++ +  I+  N+   ++ G    +   +     +          ++  + S 
Sbjct: 106 ALPDAVVALDTDFSIMWCNKLAQQMIGLKWPEDAHQHIGNLIRTP------DFIQYLNSK 159

Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579
           D R+ LE  +     +    +L I +              D++E +Q +           
Sbjct: 160 DYREPLEITSPIHHAK----TLEIRVMTYTDDQSML-VARDVTELRQLEQV--------- 205

Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639
                + +F+  VSHE+RTPLT + G+ E+++       G+  +      +      +  
Sbjct: 206 -----RRNFMGNVSHELRTPLTVLKGYLEMLE----PDEGDKMFARAHKVMSEQTARMDS 256

Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA 699
           +VN LL +S+IE+ +     + V +   +S     V +   +K + +     + +   + 
Sbjct: 257 LVNQLLALSRIEAAQAVDFEKQVDIPFMLSMLEQEVLILGADKALKVEFHVEHGL-FAMG 315

Query: 700 DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKP 759
           D   ++    N++ NA+ +TP  G++++    TS       V D G G++   +    + 
Sbjct: 316 DESQLRSAVSNLIYNAVRYTPEQGKVVVEWKQTSAGG-SFSVTDNGDGISAEHVHHLTER 374

Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           F ++ +++     G+G+GL + K ++  +     I S   +G+      PL
Sbjct: 375 FYRVDDARSRDSGGSGIGLSIVKHVLSNHDSVLDIDSKVNEGSCFSFTLPL 425


>gi|145300783|ref|YP_001143624.1| two-component system hybrid sensor histidine kinase/response
           regulator protein [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142853555|gb|ABO91876.1| two-component system hybrid sensor histidine kinase/response
           regulator protein [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 890

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 80/244 (32%), Positives = 129/244 (52%), Gaps = 10/244 (4%)

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
            +L  A ++AE  +  KSDFLA +SHEIRTP+ AI+G + +    R     +P+  +Y  
Sbjct: 144 QELEQAYELAESATRAKSDFLANMSHEIRTPMNAILGMAHLALQTRL----DPQQADYVG 199

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I RS   +L I+ND+LD SKIE+GK++L      LD  +    +LV   A  K I +  
Sbjct: 200 KIQRSAQHLLGIINDILDFSKIEAGKLDLEQIEFDLDHVLENLATLVGEKAEAKGIELLF 259

Query: 689 SFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN--EEVIL--RVRD 743
              + +  +   D   + QI +N  +NA+ FT  G +I++  T      +EV+L   V+D
Sbjct: 260 EVDHQLDTLLYGDPLRLGQILINYANNAVKFTEQG-EILVKVTCLEKLPKEVLLHCSVQD 318

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TG+GM+  + ++  + F Q  +S   +  GTGLGL +++ +     G+  + S P KG+ 
Sbjct: 319 TGIGMSQEQQQRLFQSFQQADSSTTRKYGGTGLGLAISRELAALMGGEVGVQSEPGKGST 378

Query: 804 IEII 807
               
Sbjct: 379 FWFT 382


>gi|269139680|ref|YP_003296381.1| integral membrane sensor hybrid histidine kinase [Edwardsiella
           tarda EIB202]
 gi|267985341|gb|ACY85170.1| integral membrane sensor hybrid histidine kinase [Edwardsiella
           tarda EIB202]
 gi|304559549|gb|ADM42213.1| Two-component sensor protein RcsC [Edwardsiella tarda FL6-60]
          Length = 956

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 92/372 (24%), Positives = 157/372 (42%), Gaps = 29/372 (7%)

Query: 444 KRKMEIEVMQLCSILEATSDGI-AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
             ++E        I+ +   GI  +  R+G  + +N                  +     
Sbjct: 352 ALRLEEHEQFNRKIVASAPVGISILRTRDGSNILSNELA-------------HNYISQFT 398

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
                     +T I+  +    L+ IT+    + + L +  +  +          M D+S
Sbjct: 399 PEDRQ----RITRIICEEPVSVLDVITV----QNQNLQISFVRSRYRNEDVAICAMVDVS 450

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
              + +  L      AE+ S  KS FLA VSHE+RTPL  IIG  ++++ +         
Sbjct: 451 ARVKMEESLQEMAAAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLRTKTL----PEE 506

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                  +  S  L+L I+ND+LD SKIES ++ +        E +   I         K
Sbjct: 507 VQRLLGAMSNSSGLLLKIINDILDFSKIESEQLKIEPGRFVPREVIPHIIGNYLPLVVRK 566

Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
           R+ +      ++P  +  D+  ++Q+  N+LSNAI FT +G  II+         +  RV
Sbjct: 567 RLTLYCFIEPDVPEALSGDIMRIQQVLSNLLSNAIKFTDTG-CIILQARVNDF-YLEFRV 624

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
           RDTG+G+   ++ +   PF Q+ +  Q    GTGLGL + + +V    G   + S+P  G
Sbjct: 625 RDTGLGIPPRDVLRLFDPFFQVGSGVQRHFHGTGLGLAICEKLVSLMDGDIAVESSPGLG 684

Query: 802 TLIEIIFPLYDT 813
           ++  I  P+Y  
Sbjct: 685 SIFTIRLPMYQA 696


>gi|253999966|ref|YP_003052029.1| PAS/PAC sensor signal transduction histidine kinase [Methylovorus
           sp. SIP3-4]
 gi|253986645|gb|ACT51502.1| PAS/PAC sensor signal transduction histidine kinase [Methylovorus
           sp. SIP3-4]
          Length = 450

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 79/381 (20%), Positives = 164/381 (43%), Gaps = 34/381 (8%)

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
            ++ ++   + +      A  DG+ ++N   +I   N    +  G  ++  + +P +  +
Sbjct: 94  RSQTQLSSALDRFRHAASALPDGVVLLNGHDLIEWCNPPAERHLGLSMKQDVGQPISYLV 153

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDI 561
             +       +++ + S +    ++  +      +  L L+II   +       L   DI
Sbjct: 154 RSS------DFISYLDSHNYTDPIKLKSWRLA--DTTLELQIIPFGINQK---LLISRDI 202

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           S+ ++ +                + DF+A VSHE+RTPLT + GF E + +         
Sbjct: 203 SQLEKVE--------------HMRRDFIANVSHELRTPLTVVGGFLETLSD--MDGAVPD 246

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
               Y + +      +  +V DLL +S++E+         + ++  +S  ++  +  +N+
Sbjct: 247 STRSYFDMMQEQTGRMRRLVEDLLTLSQLENSPTIPQDTEIDINALLSMVMNEARGLSND 306

Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
           +   I       +  +   L  +     N++SNAI +TP+GG I IS      + V   V
Sbjct: 307 RH-TITLEADTTL-NLTGALEELHSALGNLVSNAIRYTPTGGSIHISWKTRGTDGV-FSV 363

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
           +DTG+G+    +++  + F ++  S+     GTGLGL + K ++  +  +  I S   KG
Sbjct: 364 KDTGLGIEQQHIDRLTERFYRVDRSRSRETGGTGLGLSIVKHILTRHQARLDIESEFGKG 423

Query: 802 TLIEIIFP----LYDTSHPHD 818
           +    +FP    ++ TS P +
Sbjct: 424 STFSAVFPKARLVHKTSTPSN 444


>gi|153009454|ref|YP_001370669.1| multi-sensor hybrid histidine kinase [Ochrobactrum anthropi ATCC
           49188]
 gi|151561342|gb|ABS14840.1| multi-sensor hybrid histidine kinase [Ochrobactrum anthropi ATCC
           49188]
          Length = 857

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 97/627 (15%), Positives = 206/627 (32%), Gaps = 51/627 (8%)

Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270
            +G      + Y + +  +    +R  + V +     +     L       L+++E    
Sbjct: 103 ARGQIVYANQAYAVMTGVANAEGVRSLDNVLTAEPAASDAIYRLTNAVRDGLSAQEEVRL 162

Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSK-------ESFEYLSHRNHPSLSAYFDEGENLTP 323
                   + +              +         +++     +  +    F +      
Sbjct: 163 SGGLSREGHGSLAPVWYRIKARPVEAGHEFKSPFVAWQIADISDERAEQERFFQELQEAI 222

Query: 324 ETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
             +D  P  FF     G + Y N +               +  L+ ++    ++      
Sbjct: 223 NHLDHAPAGFFSADPSGRIIYLNATLAEWLGVDLTQFTPGSLTLNDIVAGSGMA------ 276

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
            +   +++      +     +      SLA+ F    +A +         I  +  +   
Sbjct: 277 LIKAVKAEPGTSRNTVIDLDLIKRNGQSLAVRFYHRVQAARDGTRGTSRTIVLDRAEGED 336

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG--YPVEDILRKPFTVF 500
           +   +    ++      +    IA ++  G IL TN     +F      + I        
Sbjct: 337 SSMALRSAEVRFTRFFNSAPMAIAAVDSAGHILRTNARFLDIFAPVVDRDAIDGNAKLEI 396

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL----PFSSCYSL 556
           +         +                 T+    EE+ +   +                +
Sbjct: 397 VVHERDRETFNRALAAAFAGQASISPVDTVLPGNEERHIRFYMSPVTDLGGERAEEAAII 456

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
           +  + +E K  +N+++ ++K+              ++H+    LTAII  S+++      
Sbjct: 457 SAVETTEQKALENQMAQSQKM-----QAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNHRA 511

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
              +P + +  N I ++ N    +V  LL  S+    +  L  E + L + +++ + ++ 
Sbjct: 512 --SDPSFPDIMN-IKQNANRAASLVRQLLAFSR----RQTLRPEVLDLTDVLAD-LRMLL 563

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT------ 730
                K I ++     ++  + ADL   +Q+A+N+  NA    P GG+I + T       
Sbjct: 564 ARLVGKDIELKIDHGRDLWPVKADLGQFEQVAVNLAVNARDAMPDGGEITLRTRNVSTQE 623

Query: 731 --------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
                       + V+  V DTG G+    LEK  +PF          G+GTGLGL +  
Sbjct: 624 VAKLHYRDLPEADYVVFEVEDTGTGIPADVLEKIFEPFFTTK----EVGKGTGLGLSMVY 679

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFP 809
            ++    G  Y  S   KGT  +I  P
Sbjct: 680 GIIKQTGGFIYCDSEVGKGTTFKIFLP 706



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 23/241 (9%), Positives = 68/241 (28%), Gaps = 7/241 (2%)

Query: 318 GENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
            ++L    +D  P    +    G + YAN ++ ++T   + + +      + L   P  S
Sbjct: 83  EQDLAHSFMDSQPEGTVISDARGQIVYANQAYAVMTGVANAEGVRSLD--NVLTAEPAAS 140

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           D        +                 +    +   + +    +  +         +  +
Sbjct: 141 DAIYRLTNAVRDGLSAQEEVRLSGGLSREGHGSLAPVWYRIKARPVEAGHEFKSPFVAWQ 200

Query: 437 DVDTRINKRKMEIEVMQLC-SI--LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
             D    + + E    +L  +I  L+    G    +  G I+  N  +++  G  +    
Sbjct: 201 IADISDERAEQERFFQELQEAINHLDHAPAGFFSADPSGRIIYLNATLAEWLGVDLTQFT 260

Query: 494 RKPFT-VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
               T   +   +   +   +           ++   +    +   +     ++     +
Sbjct: 261 PGSLTLNDIVAGSGMALIKAVKAEPGTSRNTVIDLDLIKRNGQSLAVRFYHRVQAARDGT 320

Query: 553 C 553
            
Sbjct: 321 R 321



 Score = 65.8 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 49/419 (11%), Positives = 111/419 (26%), Gaps = 36/419 (8%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDV--SDILHIDPNNHIGDLLKRQNTWYGKT 147
           DA G +   ++      G    + +   L +V  ++    D    + + ++   +   + 
Sbjct: 102 DARGQIVYANQAYAVMTGVANAEGV-RSLDNVLTAEPAASDAIYRLTNAVRDGLSAQEEV 160

Query: 148 TL-----WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
            L         G+   V   + A P+ + +   S F  + I  ++    +     + L +
Sbjct: 161 RLSGGLSREGHGSLAPVWYRIKARPVEAGHEFKSPFVAWQIADISDERAEQERFFQELQE 220

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR------MKNKVSSLTEYYAHKDDVLKT 256
             +HL     G  S +     I+   +    L           ++           ++K 
Sbjct: 221 AINHLDHAPAGFFSADPSGRIIYLNATLAEWLGVDLTQFTPGSLTLNDIVAGSGMALIKA 280

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN--NSKESFEYLSHRNHPSLSAY 314
            K    TS  + +                       ++          L        S  
Sbjct: 281 VKAEPGTSRNTVIDLDLIKRNGQSLAVRFYHRVQAARDGTRGTSRTIVLDRAEGEDSSMA 340

Query: 315 FDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLT-KYKSVDDIEIAGGLSTLLDA 372
               E       +  P+    V S G++   N  FL +       D I+    L  ++  
Sbjct: 341 LRSAEVRFTRFFNSAPMAIAAVDSAGHILRTNARFLDIFAPVVDRDAIDGNAKLE-IVVH 399

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
            +  +         +    +       L     N E  +     P               
Sbjct: 400 ERDRETFNRALAAAFAGQASISPVDTVL---PGNEERHIRFYMSPVTDLGGERAEEAAII 456

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSI----------LEATSDGIAIINREGIILSTNRAV 481
              E  + +  + +M  +  ++ ++                 I + +    +L TN   
Sbjct: 457 SAVETTEQKALENQM-AQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSD---LLLTNHRA 511



 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 51/152 (33%), Gaps = 11/152 (7%)

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
           E     S +++  +G  I +  G I+  N+A + + G    + +R    V   +   S  
Sbjct: 83  EQDLAHSFMDSQPEGTVISDARGQIVYANQAYAVMTGVANAEGVRSLDNVLTAEPAASDA 142

Query: 510 NHYLTEILSLDLRQTLEKITLG---STKEEKLLSLRIIIKKLPFSSC-------YSLTMH 559
            + LT  +   L    E    G         L  +   IK  P  +         +  + 
Sbjct: 143 IYRLTNAVRDGLSAQEEVRLSGGLSREGHGSLAPVWYRIKARPVEAGHEFKSPFVAWQIA 202

Query: 560 DIS-EWKQEKNKLSHAKKIAEKESSHKSDFLA 590
           DIS E  +++      ++         + F +
Sbjct: 203 DISDERAEQERFFQELQEAINHLDHAPAGFFS 234


>gi|307298320|ref|ZP_07578124.1| Hpt sensor hybrid histidine kinase [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306916406|gb|EFN46789.1| Hpt sensor hybrid histidine kinase [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 776

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 87/279 (31%), Positives = 142/279 (50%), Gaps = 11/279 (3%)

Query: 537 KLLSLRIIIKKLPFSSCYSLTMH---DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
           +++S+      +  +           ++ + +  +  L  AK+ AE  +  KS F+AR+S
Sbjct: 89  RIISIFGAFVGVAMAVSIYWIFRLKKEVRKRELIQIDLERAKREAEDANEFKSSFMARMS 148

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HEIRTPL AI G + ++K              Y + I ++ N +L I+ND+LD SKIE+G
Sbjct: 149 HEIRTPLNAITGMAYLLKKTEISLT----QSMYVDRITQASNNMLSIINDILDFSKIEAG 204

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNIL 712
           K+ L     S+D+ + + +++V     E+ I  R S    IP     D + ++QI LNIL
Sbjct: 205 KVELEITSFSMDQIIQDVVNIVSYKIEEQGIGFRLSKDPLIPNWFFGDQKRIEQILLNIL 264

Query: 713 SNAIHFTPSGGQ---IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
           +NA  FT +G     + +         +   VRDTG+GMT  +++    PF Q  ++   
Sbjct: 265 NNAAKFTSAGEVSLDVRLVAKENEKYHLSFSVRDTGIGMTEEQIKNLFMPFIQGDSTINR 324

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           R  G+GLGL + K +V+   GK  +FSTP +G+   I  
Sbjct: 325 RFGGSGLGLSIVKNLVEMMGGKIEVFSTPGEGSTFIIHL 363


>gi|148262988|ref|YP_001229694.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Geobacter uraniireducens Rf4]
 gi|146396488|gb|ABQ25121.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Geobacter uraniireducens Rf4]
          Length = 362

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 74/380 (19%), Positives = 157/380 (41%), Gaps = 36/380 (9%)

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
           E       +I+++  DG+ +++ +G+I   N A  ++ G          F+   +     
Sbjct: 4   EHLQEYYANIIDSVGDGVIVLDIQGVITLLNPAAEEIAGISRRQAKGAHFSALFKGED-- 61

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL----PFSSCYSLTMHDISE 563
           ++   + +  +  +    +   +      +L+ +      L           L + D++ 
Sbjct: 62  ILLEMVNKTAATGMT-ISDHENIVLKMTGRLIPISATTSPLLMANGERIGTILILRDLTN 120

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            ++ +  +  A +++           A ++HEI+ PL  I G +++++ +      N   
Sbjct: 121 IRELEEAVRQADRLST-----LGALAAGLAHEIKNPLGGIKGAAQLLEMEL---PDNAEL 172

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            +    + +    V  IV +LL+++        L    V+L + + + I L +   +++R
Sbjct: 173 RDCTRVMLKEVQRVNRIVEELLELA----SPRKLDLTKVNLHKILGDIILLQKRTVDDRR 228

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN--------- 734
           +  +  F  +IP ILAD   + Q+ LN++ NA+    + G I +S+   ++         
Sbjct: 229 VTFQQHFDPSIPPILADEALLTQLFLNLIKNAVEAVGAVGLIKVSSRVLADYSMTQKGEG 288

Query: 735 --EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
               V + V D G G+   +LE    PF         + +GTGLGL +   +V  + G  
Sbjct: 289 RSRMVAIEVSDDGPGILKEQLEHLFTPFYTT------KAKGTGLGLAICHKIVAEHRGMI 342

Query: 793 YIFSTPAKGTLIEIIFPLYD 812
            + S P KGT   ++ PL  
Sbjct: 343 RVDSEPTKGTTFTVMLPLIQ 362


>gi|319892475|ref|YP_004149350.1| Osmosensitive K+ channel histidine kinase KdpD [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317162171|gb|ADV05714.1| Osmosensitive K+ channel histidine kinase KdpD [Staphylococcus
           pseudintermedius HKU10-03]
 gi|323464422|gb|ADX76575.1| signal transduction histidine kinase SsrB [Staphylococcus
           pseudintermedius ED99]
          Length = 585

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 72/398 (18%), Positives = 160/398 (40%), Gaps = 41/398 (10%)

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
           +P +  ++  E           + T I+   +        +++ +  +G+  IN +  I+
Sbjct: 216 VPIQTRDEIGELAMTFNKMSRSIQTHID--ALTTSKNIRDTLINSMVEGVLGINHKKQII 273

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
            +N    ++                  ++   + N  + +       +  E         
Sbjct: 274 ISNALAERML-------------SEFNESDREMFNLQIEDTFESQKTEYREYEM-----N 315

Query: 536 EKLLSLRII---IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
           ++   + +      +          + D++   + +                K DF+A V
Sbjct: 316 QRFYVIIMSHIKKIQTNGEGGLVAIVRDMTNEHELEQV--------------KKDFIASV 361

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHE+RTP++ + G++E I +            E+   +      +  +VN+LL+++K+++
Sbjct: 362 SHELRTPISLLQGYTESIVDGVVTE--PEEINEFLTVVLDESKRLSRLVNELLNVAKMDA 419

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA-DLRSVKQIALNI 711
             +N+  E   + + V +     +  A E  + +       +  +   D   ++Q+  N+
Sbjct: 420 EGLNVTQELQPMQDLVRKMAMKYRQQAQELNLTLDFQMDGEMASLWYYDFDRMEQVLTNL 479

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           + NA  +T  G  I I  T   + ++ L + DTGVG+    LEK  + F ++ ++++   
Sbjct: 480 VDNASRYTQPGDTISIKATADHDHQI-LTIEDTGVGIAPQHLEKLFERFYKVDSARKRGS 538

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +GTGLGL + + +V+A+ G   + S   KGT   I  P
Sbjct: 539 QGTGLGLFITRMIVNAHGGHIRVESELDKGTKFIISLP 576


>gi|260777592|ref|ZP_05886485.1| sensor protein TorS [Vibrio coralliilyticus ATCC BAA-450]
 gi|260605605|gb|EEX31890.1| sensor protein TorS [Vibrio coralliilyticus ATCC BAA-450]
          Length = 958

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 110/669 (16%), Positives = 231/669 (34%), Gaps = 31/669 (4%)

Query: 161 IDLAALPIYSRNREFSGF--RGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVE 218
           +  +A+P     R+ S    R    V             K   + FS L  + +    + 
Sbjct: 44  VVNSAIPSMIEARQVSELSSRIIASVQTLSNSKSELQRQKAGKELFSQLESLLQHIKQLG 103

Query: 219 KEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTI 278
            + +D     +    ++              K  VL+ E             E E+    
Sbjct: 104 SDSFDSKLLSTLEADVQTVIDTLVELGIVVEKKLVLEKELSTRTVELREQASELEELTRT 163

Query: 279 NLNQYT--KKQYFGTLQNNSKESFEYLS-HRNHPSLSAYFDEGENLTPETVDKCPIPFFV 335
            ++  +         + +  + +    +       +    D  E L    +    +   +
Sbjct: 164 QVSNTSTIAIANVTHIYDLIENAQTSQAYQALDTLVEVDLDLAERLHELHLLAFKMLNHI 223

Query: 336 YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIA 395
                +   +            + +     +   + A +    +     +L + ++  + 
Sbjct: 224 EEARTISDIDR-----IHTVREEFVSNLEIMKRRVRAVEDPTRSIQMAELLTQLEKGEVV 278

Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
                   Q  R +   M     + +              +     ++K K  +   QL 
Sbjct: 279 FDVLHQRYQNERASQQLMQDTLIQFSALNTTVNKLVDDSNQATTRAVDKLKTTLNYAQLS 338

Query: 456 SILEATSDGIAIINREGIILSTN---RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN-H 511
             +      + +I     ++  +   R              +    + ++ N        
Sbjct: 339 LTIITVLGMLIVILIVWKVVYVSVLKRLAEYSSALSSIAQGQLNVDITVKGNDELAHMGQ 398

Query: 512 YLTEILSLDLRQTLEKITLG---STKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568
            +    +      +   +        +E    L  ++ +          + D ++    +
Sbjct: 399 AIITARNTAQSLKVVAESEAKAKRELQEHKEHLEELVTERTHQ------LQDTNKRLNHE 452

Query: 569 NKLSHA-KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
                  ++ AE+ S  K+ FLA +SHEIRTP+  ++G + ++K        N +   + 
Sbjct: 453 VLNHAKARRQAEQASRAKTAFLATMSHEIRTPMNGVLGTARLLKETGL----NSKQGHFV 508

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
           + I+RSG  +L I+ND+LD SKIE+G + +     +L + V +   L+   A EK I I 
Sbjct: 509 DVINRSGTTLLAILNDVLDYSKIEAGHLEIRPVDFNLFDMVKDVQQLLDGRAKEKNIEIS 568

Query: 688 TSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVILRVRDTG 745
           T   +++ + +  D+  + Q+  N++ NA+ FT  G   I ++     + +V+  V DTG
Sbjct: 569 TLIESDVSQFLYGDVTRISQVLTNLVGNAVKFTEQGHVDIYVTYDPGQDGQVLFEVSDTG 628

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G++  E E     F Q       +  GTGLGL ++K +V+A  G   + S   +G+   
Sbjct: 629 IGISQEEQETLFDAFTQASGGMSSK-GGTGLGLAISKRIVEAMGGFLQLESEVGQGSRFS 687

Query: 806 IIFPLYDTS 814
              PL   S
Sbjct: 688 FSVPLSQGS 696


>gi|260599137|ref|YP_003211708.1| hybrid sensory histidine kinase BarA [Cronobacter turicensis z3032]
 gi|260218314|emb|CBA33302.1| Signal transduction histidine-protein kinase barA [Cronobacter
           turicensis z3032]
          Length = 919

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 94/510 (18%), Positives = 194/510 (38%), Gaps = 37/510 (7%)

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST- 368
                  + E+     ++   +            +    + +   +  + +         
Sbjct: 33  RYHDLQRQLEDAGASIIEPLAVASEYGMSLQNKESVRQLVSVLHRRHSEIVRAISVYDRD 92

Query: 369 --LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
             L        + +   +    +  T ++ +      + +    + +   P       P+
Sbjct: 93  NKLFVTSNYQLDPSELQLPNGAALPTGLSVT------RRDD---MLILRTPVVSERYSPD 143

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
               +  +           ++++  ++L    E     + ++           A + LF 
Sbjct: 144 ESEVSDAKLSANPLGYVALELDLRSVRLQQYQEIAISLLMML--------ICMACAVLFA 195

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
           + +   +  P    +               L   +   +             +++ +   
Sbjct: 196 WRLMRDVTAPIRNMVNTVDR-----IRRGQLDSRVEGFMLGELDMLKNGINSMAMSLAAY 250

Query: 547 KLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
                        D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTPL  
Sbjct: 251 HEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNG 310

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           +IGF+ +       P       ++ N I+RS N +L I+ND+LD SK+E+GK+ L   P 
Sbjct: 311 VIGFTRLTLKTDLTPT----QRDHLNTIERSANNLLSIINDVLDFSKLEAGKLLLESIPF 366

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPS 721
            L   + E ++L+   A++K + +  S  +++P  ++ D   ++Q+  N++ NAI FT  
Sbjct: 367 PLRSTLDEVVTLLAHSAHDKGLELTISVRHDVPDNVIGDPLRLQQVITNLVGNAIKFTDH 426

Query: 722 GGQ-IIISTTHTSNEEVILRV--RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
           G   I++     SN +V + V  RDTG+G+   +  +  + F Q   S   R  GTGLGL
Sbjct: 427 GNIDIVVEKRAISNNKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGL 486

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            + + +V+   G     S P +G+      
Sbjct: 487 VITQKLVNEMGGDISFHSQPHRGSTFWFHI 516


>gi|261416190|ref|YP_003249873.1| histidine kinase [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|261372646|gb|ACX75391.1| histidine kinase [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|302327682|gb|ADL26883.1| sensor histidine kinase/response regulator [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 794

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 81/410 (19%), Positives = 162/410 (39%), Gaps = 28/410 (6%)

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD---GIAIINREGIILSTNRAVSKLF 485
                     +    K + +    +  +++   SD    +  ++ E  +   +     +F
Sbjct: 250 HIVVTLENVDEEESAKAERKAIANRDMAVISGLSDDFGCVVYVDYE-TLSEVHYRFDPMF 308

Query: 486 -----GYPVEDILRKPFTVFLEQNTPSVMNHYL-TEILSLDLRQTLEKITLG-----STK 534
                G+   D   +   V ++                   +   +++  +         
Sbjct: 309 DEMVPGWSKIDNFGERLKVLVDTVVHPSDRESFCAATEPTKVLDMVDREHMYFVNFRLQV 368

Query: 535 EEKLLSLRIIIKKLPF-SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
             + +  +I   K     +      H +    + +       + AE  +  KS FL  +S
Sbjct: 369 GGEDIYYQIKFVKDENFKNHVIAGFHSVDAETKREMA---NLEKAELANKAKSAFLFNMS 425

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           H+IRTPL A+IGF+++            + ++       S   +L ++ND+LD+S+IESG
Sbjct: 426 HDIRTPLNAMIGFTDMAVKNID---DKAKALDCLGKSKLSSEHLLSLINDVLDMSRIESG 482

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT-SFANNIPRILADLRSVKQIALNIL 712
           K+ L   PV+LDE   + + +++  A +K +             +  D   + Q+ +N++
Sbjct: 483 KVELDLNPVNLDENGEDCVPMLRSLAEKKNVHFEFAHHDIQNRYVYVDFLRLNQVIINVV 542

Query: 713 SNAIHFTPSGGQIIIST-----THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
           SNA+ +TPSGG + +                + ++DTG+GM+    +     F +   S 
Sbjct: 543 SNAVKYTPSGGSVTVDITQIPSEREGYGLYQIVIKDTGIGMSAEYQQHLFDEFSRERTST 602

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
             + +GTGLGL + K +VD   G   + S   +G+   I  P+    +P 
Sbjct: 603 VSKQQGTGLGLAITKRIVDMMEGSIDVESKVGEGSKFTIRIPMRIQENPE 652


>gi|237721045|ref|ZP_04551526.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229449880|gb|EEO55671.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 628

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 111/524 (21%), Positives = 202/524 (38%), Gaps = 32/524 (6%)

Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSV 357
             E     +  S        E L        PI   +Y   G L   N   L +   +  
Sbjct: 117 ISEVQDGPDMASAYQALQYSERLLSNIFKYLPIGIELYDMDGVLVDLNDKELEMFHIEKK 176

Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
           +D+         +   ++ +         +          +     Q     ++ +    
Sbjct: 177 EDVLGINIFDNPIFPKEMKERLKKNEDADFTFRYDFSKVGSYYQNTQKQG--TIDLVTKV 234

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
               +   + +    I  +  +T +   K++        + +    G A  N    ILS 
Sbjct: 235 TTLYDSEHQPINYLLINADKTETTVAYNKIQEFEEFFELVGDYAKVGYAHFN----ILSG 290

Query: 478 NRAVSKLFGYPVEDILRKPFTVFL------EQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
           +    K +   V +    P +           +  +++  +L +     L   L K    
Sbjct: 291 HGYAQKSWYRNVGEADETPLSDIFGTYRHFHPDDRALLIRFLDDARK-GLTTQLSKEMRV 349

Query: 532 STKEEKLLSLRII--IKKLPFSSCYSLTMH---DISEWKQEKNKLSHAKKIAEKESSHKS 586
             ++       +   +KK          +    DI+E K+ +  L  A+  AE     KS
Sbjct: 350 LREDGTYTWTHVNLLVKKYAPQDRIIEIISINYDITELKRTEEMLVKARDKAEASDRLKS 409

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
            FLA +SHEIRTPL AI+GFS ++ +             Y + I  +  L+L+++ND++D
Sbjct: 410 AFLANMSHEIRTPLNAIVGFSSLLTSTENAA----EKELYNSLIGHNNKLLLNLINDVID 465

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706
           +SKIESG + L  + V+L E + E+++          + + T++  +   +  D   +KQ
Sbjct: 466 LSKIESGYLELRLDWVNLTELLDESVAEYAHQVPS-GVELLTNYPAHDSLVELDRLRIKQ 524

Query: 707 IALNILSNAIHFTPSGGQIIISTTHT-SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           I  N LSNA+  T +G    +   +   ++ V + V+DTG G+    LEK  + F ++ +
Sbjct: 525 ILSNFLSNALKNTTTG---HVEVFYEVDHQSVRIGVKDTGRGIPQNMLEKIFERFEKLDS 581

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
                 +G GLGLP+ K +V+   G+  + S    GT   I  P
Sbjct: 582 F----AQGAGLGLPICKLIVEKMNGRILVDSQLGIGTTFIIELP 621



 Score = 40.4 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 10/97 (10%), Positives = 29/97 (29%)

Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
                         +       E      E +       +  D     + ++     L +
Sbjct: 83  EVVYLLDTVKGSVWVRSKVCFQETDEDGNEIVYGISEVQDGPDMASAYQALQYSERLLSN 142

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
           I +    GI + + +G+++  N    ++F    ++ +
Sbjct: 143 IFKYLPIGIELYDMDGVLVDLNDKELEMFHIEKKEDV 179


>gi|227878533|ref|ZP_03996467.1| phosphate regulon sensor histidine kinase [Lactobacillus crispatus
           JV-V01]
 gi|227861867|gb|EEJ69452.1| phosphate regulon sensor histidine kinase [Lactobacillus crispatus
           JV-V01]
          Length = 552

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 80/366 (21%), Positives = 159/366 (43%), Gaps = 40/366 (10%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            ++     +L ++ +A  +G+ +I+ +  IL +N AV  L G    D L       +++N
Sbjct: 215 EQLHHREKELKTVTDAMQEGLILIDLDDWILLSNPAVVSLLGLHDTDPLPDDVKEIIDKN 274

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISE 563
           +       +                    +  + + +              S+ + D++E
Sbjct: 275 SRLAHTEGI------------------VERNGRNIQISASPIISRKILKGTSILVVDVTE 316

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
              E+                + +F A VSHE++TPL +I+G +E+++N     + +   
Sbjct: 317 EYHEEQV--------------RREFTANVSHELKTPLQSIMGSAELLENHL---VKDEDR 359

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
             +   I  S   +L +++D++ +S ++  +       ++L   V+EA+  +Q  A    
Sbjct: 360 DGFYKKIHESSAQLLTLIDDIIRLSHLDENQ-RFEEIKLNLKSPVTEALEALQGSAYRHG 418

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
           I + T+ ++    ILA+ R V +IA N++ N+I +    G+  I+       + IL+V D
Sbjct: 419 IKLETNLSDT--MILANFRLVYEIAYNLIDNSIRYNKEKGKTKITVK-EHRGQAILQVAD 475

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TG+G+      +  + F ++  S   +  GTGLGL + K  V    G   + S   KG+ 
Sbjct: 476 TGIGIPQEAQNRIFERFYRVEKSYSRKTGGTGLGLSIVKHAVQQCHGTIRLESELGKGST 535

Query: 804 IEIIFP 809
             +IFP
Sbjct: 536 FTVIFP 541


>gi|224476604|ref|YP_002634210.1| respiratory response protein SrrB [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222421211|emb|CAL28025.1| staphylococcal respiratory response protein SrrB [Staphylococcus
           carnosus subsp. carnosus TM300]
          Length = 584

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 73/395 (18%), Positives = 153/395 (38%), Gaps = 35/395 (8%)

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII 474
                  ++  E      I   D+   I++      +    S++ +  +G+  IN +  I
Sbjct: 219 VNDINSKDEIGELAHSFNIMSSDIQRHIDEISASKNIRD--SLINSMVEGVLGINEKREI 276

Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
           + +N    K+             +  L           +         Q  +        
Sbjct: 277 ILSNEMAKKM-------------SEQLRTTKKEQFTEQMDRTFKEKEIQFQDYEVNNR-- 321

Query: 535 EEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
              ++ +  I +  P  S     + D++                 +    K DF+A VSH
Sbjct: 322 -FYVVIMSYIEQFQPNQSGVVAIIRDMT--------------NEHQLDQMKKDFIANVSH 366

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           E+RTP+  + G++E I +            +  + +      +  +VN+LL+++++++  
Sbjct: 367 ELRTPIALLQGYTESIVDGVVSE--PDEIRDSLSIVLDETQRLNRLVNELLNVARMDAEG 424

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714
           ++++ E   +D  +       +  A + +I I  +          D   ++Q+  N++ N
Sbjct: 425 LSVNKEVQPIDPLLERMQMKYRQQAEDLQIDINLAPNTEGQLWYYDTDRMEQVLTNLVDN 484

Query: 715 AIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           A  +T  G  I IST+ +   ++ L V DTG G+    ++     F ++  S++   EGT
Sbjct: 485 ASRYTSPGDAIKISTSESDKYDI-LYVTDTGSGIAPEHIDLVFDRFYKVDASRKRGKEGT 543

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GLGL + + +++A  G   + S   +GT   I  P
Sbjct: 544 GLGLFICRMIIEAQGGTIDLKSRLGEGTTFIIKLP 578


>gi|153833582|ref|ZP_01986249.1| MmoS [Vibrio harveyi HY01]
 gi|148870109|gb|EDL69056.1| MmoS [Vibrio harveyi HY01]
          Length = 641

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 74/253 (29%), Positives = 133/253 (52%), Gaps = 8/253 (3%)

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + + ++  A+  AE  +  KS+FLA +SHEIRTP+  IIG + ++ + +     + +  +
Sbjct: 225 EHQLEIEQARDKAEVANRKKSEFLATMSHEIRTPMNGIIGIASLLGDTKL----DEQQKD 280

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           + + I+ S N ++ I++D+LD SKIE+GK+ L     +L + + E   L  + A +K + 
Sbjct: 281 FVSIINSSSNSLMVIIDDILDFSKIEAGKIELEATTYNLLDLLHEVGRLHTVKAQQKGLQ 340

Query: 686 IRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNE--EVILRV 741
           +       +P  +  D+  +KQ+  N+LSNA+ FT  G  ++++S      +   V  RV
Sbjct: 341 LVCDIDPQLPLEVKGDMGRLKQVLSNLLSNAVKFTERGHVKLMVSQVSREADVAGVHFRV 400

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            D+G+G+     +   + F Q   S   +  GTGLGL +  ++V+   G+  + S P  G
Sbjct: 401 VDSGIGIAKENQQTVFEKFQQADGSTTRKYGGTGLGLAICSSLVEVMGGEIRLTSEPGLG 460

Query: 802 TLIEIIFPLYDTS 814
           +  E   PL   S
Sbjct: 461 SYFEFTIPLNIVS 473


>gi|189424232|ref|YP_001951409.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter
           lovleyi SZ]
 gi|189420491|gb|ACD94889.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter
           lovleyi SZ]
          Length = 551

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 86/511 (16%), Positives = 179/511 (35%), Gaps = 51/511 (9%)

Query: 314 YFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                ++      D   +    +  +  +   N     L      +D+            
Sbjct: 70  ELQVAKDELQAIFDATGVGISIIDRNFRILRCNEKQRTLLLAPEAEDVTGCYCFDA-YGN 128

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
                 +                  A    I    +     T       ++  +      
Sbjct: 129 RNAPVEHCPAKYTFATGQP------AVAREIVKRGKYFQVATTPFA--RDENNKVTTVIE 180

Query: 433 IEPEDVDTRINKRKMEIEVM-------QLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
           +  +  + ++ ++  + +         +L ++LE+ S+G+ +      ILS NR+ + + 
Sbjct: 181 VSLDITEKKMAEQSEKEQRDFYLTEKSKLATVLESLSEGLLVAGTNDRILSVNRSATMIL 240

Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
                +++    T      +           L+  +          +        L + +
Sbjct: 241 QRDEAELIGLALTDLFPVISVE---------LTDPMEIIQGLELTCTQARANECHLSLNM 291

Query: 546 KKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
             L  +        +T  +I+E K+++      +K+     S      A V+HE+ TPL 
Sbjct: 292 APLLDNEMKRIGRVITFRNITEEKKQQELYHRTEKL-----SAIGQLSAGVAHELNTPLG 346

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           +I+G++ ++  Q        +  E    I         I+  LL+ S+  +       + 
Sbjct: 347 SILGYARLLLKQEN---LTQQQREQLAVIAEQAKKSGTIIQALLNFSR-HAQPTQCRLDA 402

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
             L+  +  A+ L+    ++++I++ T     IP++ AD   ++Q+ LN++ NA+    S
Sbjct: 403 CDLNSVIKNALCLLTTELSKRKIILTTDL-ELIPKVCADPWGIEQVVLNLVMNALQAIGS 461

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
            G+I I         V L V+D+G G+ +    +   PF          GEGTGLGL + 
Sbjct: 462 QGEIRIIVRRQPEG-VRLEVQDSGPGIPDEVRSRIFDPFFTTKPF----GEGTGLGLSIC 516

Query: 782 KAMVDANMGKFYI---FSTPAKGTLIEIIFP 809
             +V+ N G   I    S   +GT   +I P
Sbjct: 517 AGIVNENGGNIDIVKSDS---RGTTFVVILP 544


>gi|320157316|ref|YP_004189695.1| phosphate regulon sensor protein PhoR (SphS) [Vibrio vulnificus
           MO6-24/O]
 gi|319932628|gb|ADV87492.1| phosphate regulon sensor protein PhoR (SphS) [Vibrio vulnificus
           MO6-24/O]
          Length = 432

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 74/426 (17%), Positives = 159/426 (37%), Gaps = 36/426 (8%)

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
           V         +    RL    W+ +            +         NG+       R  
Sbjct: 37  VATALQLGWHLHNQVRLSAWLWDEKR-------LTPPSGSGNWESLFNGLYRLQQRQRRK 89

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
           ++++   + +  +  E+  D + +   EG I+  N+    L G+   +   +P +  L  
Sbjct: 90  RKELTNLIRRFRNGAESLPDAVVVFRAEGNIVWCNKLAQHLLGFHWPEDSGQPISNLLRT 149

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                          L++   L              +L + I        + + + D+++
Sbjct: 150 PDFIKYLSGNDFSEPLEMCSPLNVER----------TLELRIVPYTEGE-HLMVVRDVTQ 198

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            KQ +                + +F A VSHE+RTP+T + G+ E+   +    L  P +
Sbjct: 199 LKQLEG--------------MRRNFFANVSHELRTPMTVLQGYLEM--TEDPDMLVGPMW 242

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            +    +    N +  +VN LL +SKIE+  ++   E V +   +          + + +
Sbjct: 243 GKAHRVMTEQLNRMNSLVNQLLTLSKIEASPIHELDEVVDVPAMLEVLEKEAVSLSGDNQ 302

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
             I       + ++ AD   ++    N++ NA+ +TP+G  + +   + +++   L V D
Sbjct: 303 HAISFQVDKAL-KVYADEDQLRSAISNLVYNAVKYTPAGANVQVRW-YRNSKGACLEVED 360

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           +G G+    + +  + F ++  ++     G+GLGL + K  +  +     I S    G+ 
Sbjct: 361 SGDGIEPQHIHRLTERFYRVDKARSRDTGGSGLGLAIVKHALTHHDTHLDIQSQVGSGSK 420

Query: 804 IEIIFP 809
              + P
Sbjct: 421 FSFVLP 426


>gi|170751607|ref|YP_001757867.1| multi-sensor hybrid histidine kinase [Methylobacterium radiotolerans
            JCM 2831]
 gi|170658129|gb|ACB27184.1| multi-sensor hybrid histidine kinase [Methylobacterium radiotolerans
            JCM 2831]
          Length = 1224

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 88/778 (11%), Positives = 205/778 (26%), Gaps = 72/778 (9%)

Query: 86   TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
             + +D    +   + E  +  G            +   I          +  +       
Sbjct: 322  LFTVDMADNVLTPTPEFCRLYGLPEQASYPATAFEGLVIPEDAHLVSTAESRREGGPPRD 381

Query: 146  KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
                     T     I       +  +     F G  +          R      ++++ 
Sbjct: 382  VEYRIRRPDTGELRWIARKGEIDHDPSGRPVRFSG--VARDVTEQRKARDALAVSEERYR 439

Query: 206  HLHEIKKG----HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
             L +           ++  +  +        +    + +           D++  E    
Sbjct: 440  TLFDSIDEGFCVIRFLDGPRGPLSDYVHVEANRAFAHHLGIDDAVGRTLRDIIPDEGAEG 499

Query: 262  LTS--EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
                  +     +            +       +       E        +     +   
Sbjct: 500  WLGIYGDVLRTGEPVRFQRQFAPNGRHLEVAAHRVEPASRREVAVLFTDVTARKEAEAAL 559

Query: 320  NLTPETV-DKCPIPFFVYSHGNLFY------------ANPSFLLLTKYKSVDDIEIAGGL 366
              +     +         + G +               + +F           +   G  
Sbjct: 560  RASEALARENVQRVQLALAAGAIIGTWLWDLPNDRFTVDAAFACAFGLDP--ALGREGIP 617

Query: 367  STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
               +      D+ A     +  +        A  + ++        +      +      
Sbjct: 618  LARIVETVHPDDQAGLAEAINVAIARGGPY-AHQYRVRRADGRYYWIEANGRVEHAADGT 676

Query: 427  NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS------------------DGIAII 468
             M   G+  +  D R  + + +     L ++ E  +                  D + + 
Sbjct: 677  PMSFPGVLLDVEDRRAVEAERDRVAADLRALNETLAAQVAERTHERDRIWHVSRDMLGVA 736

Query: 469  NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528
            +  G+ +S N A  ++ G+   DI+ K        +        +  + +  L  TL   
Sbjct: 737  DANGVWVSINPAWHRILGWDYHDIVGKTSEWLEHPDDRERTRAEVAHLAAGGL--TLAFE 794

Query: 529  TLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES--SHKS 586
                 ++    +L      +           D++  K+    L  A++   +        
Sbjct: 795  NRFRARDGSYRTLSWTAVPV--EGLLYCVSRDVTLEKERAETLLQAEEALRQSQKLEAVG 852

Query: 587  DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
                 V+H+    LT I   ++++K      L   R + Y   I  + +    +   LL 
Sbjct: 853  QLTGGVAHDFNNLLTVIKSSTDLLKR---PDLTEDRRVRYIAAISDTVDRAAKLTGQLLA 909

Query: 647  ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706
             ++ ++    L  E      +V     +V+      RI +     +    I AD      
Sbjct: 910  FARRQA----LRPEVFDAGRSVKSIGEMVETL-TGARIAVSIRVGDEPCHIHADPSQFDT 964

Query: 707  IALNILSNAIHFTPSGGQIIISTTHTS------------NEEVILRVRDTGVGMTNYELE 754
              +N+  NA       G++ IS                  + V + + DTG G+   +++
Sbjct: 965  ALVNMAVNARDAMDGEGRLDISVEAVGIVPAMRSHPAMVGDYVRIALSDTGSGIPAEQID 1024

Query: 755  KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
            +  +PF          G+GTGLGL         + G+  + S   +GT   +  P  +
Sbjct: 1025 RIFEPFFTTKG----VGQGTGLGLSQVFGFAKQSGGEVKVESEVGRGTTFALYLPRAE 1078



 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 45/549 (8%), Positives = 125/549 (22%), Gaps = 67/549 (12%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID---PNNHIGDLLKRQNTWYG 145
           +D    +   S      +G    +M G           +    P + +    ++      
Sbjct: 198 LDLDARVTGWSAGAEVILGWSEAEMRGRPAHVFFTEEDVAAGIPEDEMRGAREKGRG-ND 256

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +      +G+  +   ++  +P++  +    G+    I+      +         + +  
Sbjct: 257 ERWHLRKDGSRFFAAGEM--MPLHDEDGGLVGYLK--ILRDRTGQHLAGKALAEAEMRLR 312

Query: 206 H----------LHEIKKGHSSVEKEKYDI--FSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253
                        ++     +   E   +    +Q+  P    +  V     +     + 
Sbjct: 313 KAQAAGGVGLFTVDMADNVLTPTPEFCRLYGLPEQASYPATAFEGLVIPEDAHLVSTAES 372

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
            +    P         P+  +   I           G     S  + +    R      A
Sbjct: 373 RREGGPPRDVEYRIRRPDTGELRWIARKGEIDHDPSGRPVRFSGVARDVTEQRKARDALA 432

Query: 314 YFDEGENLTPETVDKCPIPFFVYSHGN----------LFYANPSFLLLTKYKSVDDIEIA 363
             +E         D     F V    +             AN +F              A
Sbjct: 433 VSEE---RYRTLFDSIDEGFCVIRFLDGPRGPLSDYVHVEANRAFAHHLGIDD------A 483

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
            G +     P       +                 R           L +     E A++
Sbjct: 484 VGRTLRDIIPDEGAEGWLGIYGDVLRTGEP----VRFQRQFAPNGRHLEVAAHRVEPASR 539

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLC--------SILEATSDGIAIIN-REGII 474
               +       +    +  +  +                ++      G  + +      
Sbjct: 540 REVAVLF----TDVTARKEAEAALRASEALARENVQRVQLALAAGAIIGTWLWDLPNDRF 595

Query: 475 LSTNRAVSKLFGYPV----EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530
              + A +  FG       E I        +  +  + +   +   ++            
Sbjct: 596 T-VDAAFACAFGLDPALGREGIPLARIVETVHPDDQAGLAEAINVAIARGGP--YAHQYR 652

Query: 531 GSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
               + +   +    +    +      +   + D+ + +  + +           +   +
Sbjct: 653 VRRADGRYYWIEANGRVEHAADGTPMSFPGVLLDVEDRRAVEAERDRVAADLRALNETLA 712

Query: 587 DFLARVSHE 595
             +A  +HE
Sbjct: 713 AQVAERTHE 721



 Score = 81.2 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 37/450 (8%), Positives = 105/450 (23%), Gaps = 38/450 (8%)

Query: 167 PIYSRNREFSGFRGFGIVHVNRVD--NDPRALGKRLDKKFSHLHEIKKGHSSVEKE---- 220
                 R  +   G+GI+        +D   L  R+      L  +  G     K     
Sbjct: 7   AARDPAR-LAALDGYGILDTPAEQGFDDIVLLASRICGTPVALVSLVAGDRQWFKARVGF 65

Query: 221 ---KYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDF-- 275
              +  +          +    V           D       P L     +  E  D   
Sbjct: 66  DPCETPLSQSVCAHALRQPGLLVIPDLTEDPRTRDNPLVTDEPRLRFYAGARLETPDGMP 125

Query: 276 ----HTINLNQYTKKQYFGTLQNNSKESFEYLS-------HRNHPSLSAYFDEGENLTPE 324
                 I+     +       ++    + + ++                   E      +
Sbjct: 126 LGTLCVIDGTPRPEGLTLEQAESLQALARQVMAQMDLHRSMAERDDALRQVREAATRHRQ 185

Query: 325 TVDKCPI--PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
            +D         +     +   +    ++  +   +       +        ++      
Sbjct: 186 ILDSAIDYAMVTLDLDARVTGWSAGAEVILGWSEAEMRGRPAHV--FFTEEDVAAGIPED 243

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
            +   R           L   + +     A         ++    +    I  +     +
Sbjct: 244 EMRGAREKGRGNDERWHL---RKDGSRFFA-AGEMMPLHDEDGGLVGYLKILRDRTGQHL 299

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
             + +    M+L     A   G+  ++    +L+      +L+G P +          L 
Sbjct: 300 AGKALAEAEMRLRKAQAAGGVGLFTVDMADNVLTPTPEFCRLYGLPEQASYPATAFEGLV 359

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-----CYSLT 557
               + +             +  +        +   L       ++          +S  
Sbjct: 360 IPEDAHLVSTAESRREGGPPR--DVEYRIRRPDTGELRWIARKGEIDHDPSGRPVRFSGV 417

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
             D++E ++ ++ L+ +++          +
Sbjct: 418 ARDVTEQRKARDALAVSEERYRTLFDSIDE 447


>gi|168183173|ref|ZP_02617837.1| sensory box histidine kinase [Clostridium botulinum Bf]
 gi|237796198|ref|YP_002863750.1| sensory box histidine kinase [Clostridium botulinum Ba4 str. 657]
 gi|182673684|gb|EDT85645.1| sensory box histidine kinase [Clostridium botulinum Bf]
 gi|229263232|gb|ACQ54265.1| sensory box histidine kinase [Clostridium botulinum Ba4 str. 657]
          Length = 702

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 89/496 (17%), Positives = 182/496 (36%), Gaps = 18/496 (3%)

Query: 322 TPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
               ++       V+     L   N +   + + K    ++I   ++           N 
Sbjct: 184 LNNVINNISEGILVFDKHSKLILWNKAIEQIGEMKIKKILDIKEIINEYDIYILDDHKNM 243

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
              +     D         L  ++ +      + +      ++  E +          D 
Sbjct: 244 KYKIKKMNPDYNSSVKDLLLKLVKKDTNKIKYIEYNSNPIMDENNEILYTISSIKNVTDL 303

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPV-----EDILR 494
             ++   E     +  +++     +A+++  +      N    +L           ++  
Sbjct: 304 IESQIISEERAEFIKYVVDCIELPLAVLDYPDLTYKLVNERYEELVERLHTKKIKGNLFG 363

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQ--TLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
                   +         L ++    +++     K  +  + EE+   +R I  +     
Sbjct: 364 NTVENIFRKEEFKEQLEVLQKMKDGTIKEYTFSPKKFILQSGEERFFKVRYIYHETKNKK 423

Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
              +   D++E  +   +L       EK +  K +F   +SHE+RTPLT I    + +  
Sbjct: 424 RVHIHGSDVTEEFKSNLEL-------EKVNKLKDEFFTIISHELRTPLTIIYSSLQ-LAY 475

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
             +    N    +    I+++   +L ++N++LDISK E+G + L+ E   +       +
Sbjct: 476 DIYPEDINLNIDKILKRINQNTARLLKLINNILDISKAEAGFLTLNNEYFDIVWETENIV 535

Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
           + +  YAN K I +          +  D    ++I LN+LSNA+ FTP    I ++    
Sbjct: 536 NSITNYANSKNINLIFDTTKEEEEVWIDKDKYERILLNLLSNAVKFTPENKSIYVTLKIY 595

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
            N    L V+D G G+   +++     F Q+ +S     EGTG+GL L K +VD   G+ 
Sbjct: 596 KNNF-KLIVKDEGRGIPKEKIDCIFNRFAQVNSSLSRSAEGTGIGLSLVKKIVDLMDGEI 654

Query: 793 YIFSTPAKGTLIEIIF 808
            ++S    GT   +  
Sbjct: 655 KVYSILGNGTTFTVKI 670


>gi|123442879|ref|YP_001008383.1| putative virulence sensor protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122089840|emb|CAL12696.1| putative virulence sensor protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 1274

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 91/384 (23%), Positives = 172/384 (44%), Gaps = 18/384 (4%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK---PF 497
           R     +   ++Q  SI+ A    + I    G +   N   ++     + D+L     P 
Sbjct: 594 RRQAALLHARLLQQESIINALPFAVFIRTAAGELAVYNSHFAEAHQDKLNDLLNHNNEPA 653

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-YSL 556
              +       ++ Y  ++L+    Q ++   L      +L  + + I  L  +      
Sbjct: 654 NWPMTSPLDREIDKYCRQVLTHRKPQMVD---LSLEINGELRDIFLWIIPLDNAERSLFG 710

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
              DIS+ K  + +L  A+  AE  +  KS FLA +SHE+RTP+ AI+G  E ++ +   
Sbjct: 711 GWLDISQRKTVERQLEAARVEAESANRTKSTFLATISHELRTPMYAIMGLLE-LEIRSEQ 769

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
           P+           + +S   ++ +++D++D +KIE+G++++H   V   + +    ++ Q
Sbjct: 770 PVD----KNTLVTVSKSAQSLMLLLDDIIDSAKIEAGQLSVHPAVVDFRQEIERMFTIYQ 825

Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT--- 732
             A+E+ +       N IP  ++ D+  V+Q+  N+L NA+ FT  G  + +  T     
Sbjct: 826 PIADERNLRFSGWVDNQIPDLVMVDMLRVRQVMGNLLGNALKFTEQGS-VSVDMTWEAID 884

Query: 733 SNEEVI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
               V+ + + DTG+G++        +PF Q    +  R  G+GLGL +   ++    G+
Sbjct: 885 DKHGVMNIDITDTGIGISPAAQATLFQPFSQANEGKSPRFGGSGLGLWICHQLIHKMGGE 944

Query: 792 FYIFSTPAKGTLIEIIFPLYDTSH 815
             + S   KGT + I  PL   S 
Sbjct: 945 ITLESQLGKGTSLFITLPLEVASA 968


>gi|212211801|ref|YP_002302737.1| two component system histidine kinase [Coxiella burnetii CbuG_Q212]
 gi|212010211|gb|ACJ17592.1| two component system histidine kinase [Coxiella burnetii CbuG_Q212]
          Length = 657

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 78/371 (21%), Positives = 159/371 (42%), Gaps = 24/371 (6%)

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED-ILRKPFTVF-LEQNTPSV 508
              L  I+      I   ++  I    N+  ++ FGY  +  I+ K    F   +     
Sbjct: 9   EEALLEIINNVPHYIFWKDKNLIFRGCNKMFAEQFGYKDQSGIIGKTDEDFPWSKELRKK 68

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEW 564
                  ++     + L+        +  + ++ +                    DI++ 
Sbjct: 69  YRQDDLSVIETGKPK-LDYEESQVQADGSIKTVLVSKVPYRNKEGNIVGILGIYTDITKR 127

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           K+ +  L        K +  KS+FLA + H++RTPLT II  +E +    +      +  
Sbjct: 128 KRMEESL-------RKANKVKSEFLANMGHDLRTPLTGIILIAEYL----WKKQTEEKDK 176

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           + +  +  +G  +L  +N++L+I+ +E+G ++   +  SL + + +  ++++    +K++
Sbjct: 177 QLSKDLILAGKQLLHFINEVLEITNVEAGNIDYEKKSFSLKKLIDQVFAMLRPSFQQKQL 236

Query: 685 LIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTH--TSNEEVILR- 740
                +  +IP +L      + +I +N+L N++ FT  G Q+ I T     S  +V++  
Sbjct: 237 AFYNDYDPHIPEVLIGSEIMIFRILMNLLGNSLKFTEEG-QVTIQTKLANRSGNQVLIEL 295

Query: 741 -VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V DTG+G+   E +     F ++  S   +  G+GLGL L K   +A  G+  + S P 
Sbjct: 296 IVSDTGIGIPKEEHKNIFAQFKRLTPSYASKYRGSGLGLFLVKTYAEALQGQVTLESEPG 355

Query: 800 KGTLIEIIFPL 810
           +G+      PL
Sbjct: 356 RGSRFICTIPL 366


>gi|163792987|ref|ZP_02186963.1| sensor/response regulator hybrid [alpha proteobacterium BAL199]
 gi|159181633|gb|EDP66145.1| sensor/response regulator hybrid [alpha proteobacterium BAL199]
          Length = 528

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 98/305 (32%), Positives = 162/305 (53%), Gaps = 19/305 (6%)

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568
            NH L +I +      + +  L    +++   L+    +L                 Q  
Sbjct: 223 FNHMLEQIETQHRELMVYREQLERLVDDRTTQLQDANVRLH----------------QTV 266

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
             L  +K   E  +  KS+FLA +SHE+RTPL AIIGFS+++ NQ FG LG+ RY +YA 
Sbjct: 267 ADLQESKSELESANRFKSEFLANMSHELRTPLNAIIGFSDIMVNQLFGKLGDARYEDYAK 326

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I  S N +++I+ D+LD ++IE GK+ L    VS+D  + +A+ ++    + +RI +  
Sbjct: 327 DIHYSANHLIEIIGDILDTTRIEFGKLELQEATVSVDGLLEDALRIISPSIHAQRIKLEQ 386

Query: 689 S-FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747
                  P++  D   V+QI +N+LSNA+ FT  GG I I         + + + DTG+G
Sbjct: 387 QALPLPGPKLRCDPIRVRQILINLLSNAVKFTDPGGAISIGVKIRDG--IEITITDTGIG 444

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           +   +LE+ + PF Q+ ++   + +GTGLGL L+K +++ + GK  + S   +GT + I 
Sbjct: 445 IDEADLERVVTPFAQVEHAFARKYQGTGLGLSLSKTLMECHQGKLTLSSRLGEGTAVTIY 504

Query: 808 FPLYD 812
           FP + 
Sbjct: 505 FPAFR 509


>gi|29655049|ref|NP_820741.1| two component system histidine kinase [Coxiella burnetii RSA 493]
 gi|154707750|ref|YP_001423668.1| two component system histidine kinase [Coxiella burnetii Dugway
           5J108-111]
 gi|29542318|gb|AAO91255.1| two component system histidine kinase [Coxiella burnetii RSA 493]
 gi|154357036|gb|ABS78498.1| two component system histidine kinase [Coxiella burnetii Dugway
           5J108-111]
          Length = 657

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 78/371 (21%), Positives = 159/371 (42%), Gaps = 24/371 (6%)

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED-ILRKPFTVF-LEQNTPSV 508
              L  I+      I   ++  I    N+  ++ FGY  +  I+ K    F   +     
Sbjct: 9   EEALLEIINNVPHYIFWKDKNLIFRGCNKMFAEQFGYKDQSGIIGKTDEDFPWSKELRKK 68

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEW 564
                  ++     + L+        +  + ++ +                    DI++ 
Sbjct: 69  YRQDDLSVIETGKPK-LDYEESQVQADGSIKTVLVSKVPYRNKEGNIVGILGIYTDITKR 127

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           K+ +  L        K +  KS+FLA + H++RTPLT II  +E +    +      +  
Sbjct: 128 KRMEESL-------RKANKVKSEFLANMGHDLRTPLTGIILIAEYL----WKKQTEEKDK 176

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           + +  +  +G  +L  +N++L+I+ +E+G ++   +  SL + + +  ++++    +K++
Sbjct: 177 QLSKDLILAGKQLLHFINEVLEITNVEAGNIDYEKKSFSLKKLIDQVFAMLRPSFQQKQL 236

Query: 685 LIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTH--TSNEEVILR- 740
                +  +IP +L      + +I +N+L N++ FT  G Q+ I T     S  +V++  
Sbjct: 237 AFYNDYDPHIPEVLIGSEIMIFRILMNLLGNSLKFTEEG-QVTIQTKLANRSGNQVLIEL 295

Query: 741 -VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V DTG+G+   E +     F ++  S   +  G+GLGL L K   +A  G+  + S P 
Sbjct: 296 IVSDTGIGIPKEEHKNIFAQFKRLTPSYASKYRGSGLGLFLVKTYAEALQGQVTLESEPG 355

Query: 800 KGTLIEIIFPL 810
           +G+      PL
Sbjct: 356 RGSRFICTIPL 366


>gi|256849456|ref|ZP_05554888.1| signal transduction histidine kinase [Lactobacillus crispatus
           MV-1A-US]
 gi|256713572|gb|EEU28561.1| signal transduction histidine kinase [Lactobacillus crispatus
           MV-1A-US]
          Length = 552

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 80/366 (21%), Positives = 159/366 (43%), Gaps = 40/366 (10%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            ++     +L ++ +A  +G+ +I+ +  IL +N AV  L G    D L       +++N
Sbjct: 215 EQLHHREKELKTVTDAMQEGLILIDLDDWILLSNPAVVSLLGLHDTDPLPDDVKEIIDKN 274

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISE 563
           +       +                    +  + + +              S+ + D++E
Sbjct: 275 SRLAHTEGI------------------VERNGRNIQISASPIISRKILKGTSILVVDVTE 316

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
              E+                + +F A VSHE++TPL +I+G +E+++N     + +   
Sbjct: 317 EYHEEQV--------------RREFTANVSHELKTPLQSIMGSAELLENHL---VKDEDR 359

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
             +   I  S   +L +++D++ +S ++  +       ++L   V+EA+  +Q  A    
Sbjct: 360 DGFYKKIHESSAQLLTLIDDIIRLSHLDENQ-RFEEIKLNLKSPVTEALEALQGSAYRHG 418

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
           I + T+ ++    ILA+ R V +IA N++ N+I +    G+  I+       + IL+V D
Sbjct: 419 IKLETNLSDT--MILANFRLVYEIAYNLIDNSIRYNKEKGKTKITVK-EHRGQAILQVAD 475

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TG+G+      +  + F ++  S   +  GTGLGL + K  V    G   + S   KG+ 
Sbjct: 476 TGIGIPQEAQNRIFERFYRVEKSHSRKTGGTGLGLSIVKHAVQQCHGTIRLESELGKGST 535

Query: 804 IEIIFP 809
             +IFP
Sbjct: 536 FTVIFP 541


>gi|170744165|ref|YP_001772820.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium sp. 4-46]
 gi|168198439|gb|ACA20386.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium sp. 4-46]
          Length = 513

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 76/461 (16%), Positives = 177/461 (38%), Gaps = 26/461 (5%)

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
             A    ++   +   + R+             ++ +   +  +      + +     + 
Sbjct: 60  FQARIHPEDRPGRAAAIARALAEGGTYEVDYRALRPDGRTA-WLRSRGRVELDAAGRPLR 118

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
             G+       +  +  +      L SIL+   D + +I+ E  I S + A  +LFG+  
Sbjct: 119 HRGVVFSIDAQKRAEDDLRAREAHLQSILDTVPDAMVVIDAEARIHSFSAAAERLFGHAA 178

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKK 547
            +++ +   + + +      + YL        R+ +   +I  G  ++     + + I +
Sbjct: 179 AEVIGRNVNLLMPEPDRQRHDGYLARYHRTGERRIIGTARIVTGQRRDGSTFPMELAIGE 238

Query: 548 LPFSSCYS--LTMHDISEWKQEKNKLSHAKKIAEKESS--HKSDFLARVSHEIRTPLTAI 603
           +           + D++E ++ + KL   +      S      +  + ++HE+  PL A+
Sbjct: 239 MRSGERVFYTGFITDLTERQETQAKLQELQAELVHVSRLSAMGEMASALAHELNQPLGAV 298

Query: 604 IGFS---EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI-SKIESGKMNLHF 659
             ++     + +Q  G     R ++  + +         I+  L D  ++ E+ K     
Sbjct: 299 SNYARGCRRLLDQAGGVPS--RALDAIDRVAEQALRAGQIIRRLRDFVARGETDK---RI 353

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719
           EPVS    + EA +L  + A E+ ++ R+     +  +LAD   ++Q+ +N++ NA    
Sbjct: 354 EPVS--RLIEEASALALVGAREQGVVFRSRLDPQVRAVLADRVQIQQVLVNLIRNAREAM 411

Query: 720 P--SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
                 +I +     +   V + V DTG G+     ++  +PF     +      G G+G
Sbjct: 412 QPVPRREITVEARPAAPGMVEIAVADTGPGIAPEVADRLFQPFVTTKAT------GLGVG 465

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
           L + +++V+A+ G+  +    A G    +  P        +
Sbjct: 466 LSICRSIVEAHGGRLAVARNAAGGATFSLTLPAARVVESQE 506



 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/388 (8%), Positives = 93/388 (23%), Gaps = 26/388 (6%)

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244
              R+  DP  L   LD+       +     +V           +    L   +   +  
Sbjct: 5   RPARIGLDPSELRATLDEAGICTWSLDPATGAVAASAACDALFGADEGSLTSLD---AFQ 61

Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE----SF 300
                +D   +        +E  +          +      +       + +        
Sbjct: 62  ARIHPEDRPGRAAAIARALAEGGTYEVDYRALRPDGRTAWLRSRGRVELDAAGRPLRHRG 121

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDD 359
              S              E      +D  P     + +   +   + +   L  + + + 
Sbjct: 122 VVFSIDAQKRAEDDLRAREAHLQSILDTVPDAMVVIDAEARIHSFSAAAERLFGHAAAEV 181

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
           I     L  L+  P    ++          +R  I  +  +   + +             
Sbjct: 182 IGRNVNL--LMPEPDRQRHDGYLARYHRTGERRIIGTARIVTGQRRDGSTFPM---ELAI 236

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI--LEATSDGIAIINREGIILST 477
              +  E +   G   +  + +  + K++    +L  +  L A  +  + +  E      
Sbjct: 237 GEMRSGERVFYTGFITDLTERQETQAKLQELQAELVHVSRLSAMGEMASALAHEL----- 291

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS-TKEE 536
           N+ +  +  Y             +       ++    + L         +  +     ++
Sbjct: 292 NQPLGAVSNYARGCRRLLDQAGGVPSRALDAIDRVAEQALRAGQIIRRLRDFVARGETDK 351

Query: 537 KLLSLR-----IIIKKLPFSSCYSLTMH 559
           ++  +           L  +    +   
Sbjct: 352 RIEPVSRLIEEASALALVGAREQGVVFR 379



 Score = 46.9 bits (110), Expect = 0.015,   Method: Composition-based stats.
 Identities = 30/247 (12%), Positives = 63/247 (25%), Gaps = 11/247 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           IDA   +   S    +  G+ A ++IG  +  +        ++       R        T
Sbjct: 157 IDAEARIHSFSAAAERLFGHAAAEVIGRNVNLLMPEPDRQRHDGYLARYHRTGERRIIGT 216

Query: 149 LWPIEG---TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
              + G        P++LA   + S  R F  + GF          + +    +L +  +
Sbjct: 217 ARIVTGQRRDGSTFPMELAIGEMRSGERVF--YTGF-----ITDLTERQETQAKLQELQA 269

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV-SSLTEYYAHKDDVLKTEKYPLLTS 264
            L  + +  +  E           P   +    +    L +               +   
Sbjct: 270 ELVHVSRLSAMGEMASALAHELNQPLGAVSNYARGCRRLLDQAGGVPSRALDAIDRVAEQ 329

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
              +               T K+     +   + S   L       +         +   
Sbjct: 330 ALRAGQIIRRLRDFVARGETDKRIEPVSRLIEEASALALVGAREQGVVFRSRLDPQVRAV 389

Query: 325 TVDKCPI 331
             D+  I
Sbjct: 390 LADRVQI 396


>gi|115378951|ref|ZP_01466084.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|310818264|ref|YP_003950622.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|115364027|gb|EAU63129.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309391336|gb|ADO68795.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 639

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 115/651 (17%), Positives = 225/651 (34%), Gaps = 38/651 (5%)

Query: 181 FGIVHVNRVDNDPRALGKRLDKKFSHLH--EIKKGHSSVEKEKYDI--FSQQSPPPHLRM 236
           F ++        P A     +     L   +      +              +    +  
Sbjct: 5   FRVLRRA-GGPPPEAFQTLFEVLDEPLALCDGDLRLQAANPPFLRFCTAHGTTAEGMVAG 63

Query: 237 KNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS 296
             +  S       +D      + PL       L       T+ +    +       +   
Sbjct: 64  MVQTLSQEPGLVPEDGDSSDVEVPLPGRRCVLLTVARRGDTVAVRGRLEPGRLMVAERAL 123

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKS 356
            E           S S     GE      V +     F      +   +     LT   +
Sbjct: 124 LEQARTEGVLLDLSRSVAEASGEEELVAAVARGVKELFPSRTFCIRIVDARTCGLTSLYA 183

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
              ++   G    L   + +       +    SDR  +A    L         S  +   
Sbjct: 184 EGRLKE--GAHEPLVLKRSAVARTHLEMARLPSDRVMVAREVPLIFTGTALGVSAPLVAS 241

Query: 417 -----------PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE----VMQLCSILEAT 461
                      P         +          V   +   K+  E       L  +LE  
Sbjct: 242 GQLFGAINMEYPEGLEADVSHDERVLLQLANQVAVAVRNAKLIDELTFVRKYLEDLLERA 301

Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
           +  I + NR+  ++  N+A+S L G+  E++L K    F+ ++        L+  +  + 
Sbjct: 302 NALILVANRDRQVVVFNQALSALTGFAKEEVLGKDVFAFIPEDEQLRFGAMLSAAMRGER 361

Query: 522 RQTLEKITLGSTKEEKL-LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
             ++E       +E ++  +   ++              DI+  K+ + ++ HA+K+A  
Sbjct: 362 VNSIETRLRSRDREVRVTFATSHMLTPQGEVEGVIAIGQDITVMKELEKRIIHAEKLA-- 419

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
                    A V HEI  P+TA+  ++E +         +    +    I  S + +L  
Sbjct: 420 ---SIGQLAASVVHEINNPMTAVATYAEALLMNARLRPNSTAEQDKLKKIRESSDRILRF 476

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILAD 700
             DL+  ++    K     E V L+  + +A+S  +   +  ++ +   +A  +P + A 
Sbjct: 477 TRDLVSYARPAKEK----PEQVPLESILEQAVSYCEHVVSHAKVNVERDYAP-LPPVSAV 531

Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760
             ++ Q+ +N+++NA H   SGG++++ST     + V+L VRDTG G+    L     PF
Sbjct: 532 RANLVQVFVNLITNACHAMVSGGKVMLSTRRDGQDAVVL-VRDTGTGIDPKHLGHIFDPF 590

Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
                     G+GTGLGL + + +V+++ G+  + ST  +GT+  +  PL 
Sbjct: 591 FTTK----EEGKGTGLGLSIVQGIVESHGGRITVDSTLGEGTVFTLRLPLA 637



 Score = 41.2 bits (95), Expect = 0.79,   Method: Composition-based stats.
 Identities = 19/237 (8%), Positives = 55/237 (23%), Gaps = 12/237 (5%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEG 154
           +   ++ L    G    +++G  +              +     R        T      
Sbjct: 314 VVVFNQALSALTGFAKEEVLGKDVFAFIPEDEQLRFGAMLSAAMRGERVNSIETRLRS-- 371

Query: 155 TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214
            +  V +  A   + +   E  G    G      V  +        +K  S         
Sbjct: 372 RDREVRVTFATSHMLTPQGEVEGVIAIG--QDITVMKELEKRIIHAEKLASIGQLAASVV 429

Query: 215 SSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQED 274
             +      + +              + L      + D LK  K    +           
Sbjct: 430 HEINNPMTAVATYAEALLMN------ARLRPNSTAEQDKLK--KIRESSDRILRFTRDLV 481

Query: 275 FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI 331
            +     +  ++    ++   +    E++      ++   +     ++    +   +
Sbjct: 482 SYARPAKEKPEQVPLESILEQAVSYCEHVVSHAKVNVERDYAPLPPVSAVRANLVQV 538


>gi|257062029|ref|YP_003139917.1| CBS sensor hybrid histidine kinase [Cyanothece sp. PCC 8802]
 gi|256592195|gb|ACV03082.1| CBS sensor hybrid histidine kinase [Cyanothece sp. PCC 8802]
          Length = 851

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 76/267 (28%), Positives = 136/267 (50%), Gaps = 5/267 (1%)

Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
            +      Y +   D++E ++   +L+       + +  K +FLA +SHE+++PLTA++G
Sbjct: 313 SEDLGGEIYLVLATDVTEQQRLCQELAAKNADLVQLNRLKDEFLACISHELKSPLTAVVG 372

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
            S ++  Q+ G L N R + YA  I RSG  ++ +VNDLLD++++E+G++ L F P+++ 
Sbjct: 373 LSSLLGEQKVGEL-NTRQVHYAELIYRSGRQLMTLVNDLLDLTRLETGQLKLSFLPLNIK 431

Query: 666 EAVSEAISLVQLYANEKR---ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
                A   +      K    + I       +  ILAD   + Q+ +++L NA+ FT + 
Sbjct: 432 NICERAYHSIIEKYQSKTDVPLSINLDIEPALKFILADELRLHQMLVHLLDNAMKFTQAE 491

Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
           G++ I  +   N  +   V DTG+G+         + F Q+ N    + EGTGLGL L +
Sbjct: 492 GKVGIRVSRWEN-WIAFTVWDTGIGIPEESQHLIFQKFQQLENPLTRKFEGTGLGLVLTQ 550

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFP 809
            +  A+ G     S   +G+   ++ P
Sbjct: 551 RLARAHGGDISFISKEGQGSQFTLLLP 577


>gi|148252133|ref|YP_001236718.1| PAS/PAC sensor hybrid histidine kinase [Bradyrhizobium sp. BTAi1]
 gi|146404306|gb|ABQ32812.1| PAS/PAC sensor hybrid histidine kinase [Bradyrhizobium sp. BTAi1]
          Length = 1193

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 92/650 (14%), Positives = 195/650 (30%), Gaps = 58/650 (8%)

Query: 190  DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP---HLRMKNKVSSLTEY 246
                R      ++ +S   E              I +             +  V    ++
Sbjct: 430  TEAARDHFAARERLYSAAVESSNDAIVTLALDGTITAWNPAAETMLGYAAEEAVGRQADF 489

Query: 247  YAHKDDVLKTEKYPLLTSEESSLPEQEDFH-TINLNQYTKKQYFGTLQNNSKESFEYLSH 305
                D + + +   L  +    +   E      +            +++ + +       
Sbjct: 490  VVPADRMAEAQDILLRVARGERIQHFETVRIRKDGEHILVSLSVSPIKSPTGQIIGASKI 549

Query: 306  RNHPSLSAYFDEGENLT----PETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDI 360
                + S   ++             +       +    G L   +PS   +  Y   + I
Sbjct: 550  ARDITESRKTEQALRQQTEERRRIFETSQDLILITDRSGILVQVSPSVEAILGYTPAEMI 609

Query: 361  EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
               G        P        +   L  S       ++    +  +              
Sbjct: 610  GRNG---ADFIHPDDLQKARDE---LRASRHGLSPRNSDGRYVHKDGRVVTLSWTS---- 659

Query: 421  ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
             N          I  +  ++R+ +  +        +I+E   D    ++ +G IL+ N  
Sbjct: 660  -NWSEPVQRHFFIGRDMTESRLAQETLRESEQLARNIIETALDAFVQVDAKGAILNWNSQ 718

Query: 481  VSKLFGYPVEDILRKPFTVFLEQNTP-SVMNHYLTEILSLDLRQTLE----KITLGSTKE 535
              K+FG+P  +IL K     +  +     +   L  I+       L     +  +   ++
Sbjct: 719  AEKIFGWPRAEILGKDVFDLITIDDEGEELRSALGRIVLTGEASALGIGRRREVIVRRRD 778

Query: 536  EKLLSLRIIIKKLPFSSCYS--LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
             +     + +  L   + +       D+++    +      +    ++          ++
Sbjct: 779  GRDFKAEVSVTALKTRNGFVFNGFFRDLTDKIAAEE-----RIRQSEKMEAIGQLTGGIA 833

Query: 594  HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
            H+    LT I G  E++          P+       ID +     D+   LL  ++    
Sbjct: 834  HDFNNILTVITGTIEILA---AAVAKEPQLAAITRMIDEAAARGADLTQHLLAFAR---- 886

Query: 654  KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713
            +  L    V ++  V +   L++     ++I I + F +       D   +    +N+  
Sbjct: 887  RQPLQPREVDVNMLVIDTAKLLRPTL-GEQIEIESVFQDETCAAHVDPNQLATAIINLAL 945

Query: 714  NAIHFTPSGGQIIISTTH--------------TSNEEVILRVRDTGVGMTNYELEKAMKP 759
            NA    PSGG++I+ T                      ++ V D+G G+    ++K   P
Sbjct: 946  NARDAMPSGGKLILETGWADLDENYASLYDDVRPGRYAMIAVSDSGSGIPAAIIDKVFNP 1005

Query: 760  FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            F          G+GTGLGL +    V  + G   I+S    GT I +  P
Sbjct: 1006 FFTSKGP----GKGTGLGLSMVYGFVKQSSGHVRIYSEEGHGTTIRMYLP 1051



 Score =  132 bits (332), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 56/501 (11%), Positives = 139/501 (27%), Gaps = 48/501 (9%)

Query: 106 IGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAA 165
           +G   F   G     +   L +D       L            +    G  L+ P     
Sbjct: 214 VGTPVFSPDGKPFAILM--LDLDMRPIFAHLRSAARPGAQL-YVVNARGDYLFHP----- 265

Query: 166 LPIYSRNREFSGFRGFGIVHVNRVDNDPRALG------KRLDKKFSHLHEIKKGHSSVEK 219
                 +REF+  RG      +   +   A G      + L         +    + +  
Sbjct: 266 ----ESDREFASKRGGSTRWQDDFPSLASATGSTQGFARILHDDAKRPGGVAFAPAMLAG 321

Query: 220 EKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTIN 279
           +++    +  P             T        +L       + +   + P  +    + 
Sbjct: 322 QEWVAVIETIPNTAFMAPALAIRKTAIEVGLIAMLCAAALAFVVARSLTRPINQLTQAVE 381

Query: 280 LNQYTKK-----QYFGTLQNNSKESFEYLSHRNHPSLSAYFD---------------EGE 319
                +      +  G     ++     L      +     +                 E
Sbjct: 382 SVGRGESVKIPLEAVGETGVLARAFARVLEEVRAKTAELEREVQEHYLTEAARDHFAARE 441

Query: 320 NLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
            L    V+        +   G +   NP+   +  Y + + +            P     
Sbjct: 442 RLYSAAVESSNDAIVTLALDGTITAWNPAAETMLGYAAEEAVGRQAD----FVVPADRMA 497

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
            A   ++                 I+ + E+ L ++       +   + +  + I  +  
Sbjct: 498 EAQDILLRVARGERIQHFETV--RIRKDGEHIL-VSLSVSPIKSPTGQIIGASKIARDIT 554

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
           ++R  ++ +  +  +   I E + D I I +R GI++  + +V  + GY   +++ +   
Sbjct: 555 ESRKTEQALRQQTEERRRIFETSQDLILITDRSGILVQVSPSVEAILGYTPAEMIGRNGA 614

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM 558
            F+  +        L                    K+ ++++L            +    
Sbjct: 615 DFIHPDDLQKARDELRASRHG--LSPRNSDGRYVHKDGRVVTLSWTSNWSEPVQRHFFIG 672

Query: 559 HDISEWKQEKNKLSHAKKIAE 579
            D++E +  +  L  ++++A 
Sbjct: 673 RDMTESRLAQETLRESEQLAR 693



 Score = 97.8 bits (242), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 35/373 (9%), Positives = 93/373 (24%), Gaps = 15/373 (4%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH--IDPNNHIGDLLKRQNTWYGKTTL 149
            G +   +      +G  A + +G +  D         +  + +  + + +   + +T  
Sbjct: 461 DGTITAWNPAAETMLGYAAEEAVGRQ-ADFVVPADRMAEAQDILLRVARGERIQHFETVR 519

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
              +G   ++ + L+  PI S   +  G     I              ++  ++   + E
Sbjct: 520 IRKDGE--HILVSLSVSPIKSPTGQIIGASK--IARDITESRKTEQALRQQTEERRRIFE 575

Query: 210 IKKGHSSVEKEKYDIFSQQ---SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY-PLLTSE 265
             +    +      +                  +      + H DD+ K           
Sbjct: 576 TSQDLILITDRSGILVQVSPSVEAILGYTPAEMIGRNGADFIHPDDLQKARDELRASRHG 635

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
            S       +   +    T        +   +  F                E E L    
Sbjct: 636 LSPRNSDGRYVHKDGRVVTLSWTSNWSEPVQRHFFIGRDMTESRLAQETLRESEQLARNI 695

Query: 326 VDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
           ++        V + G +   N     +  +   + +         +D       +A+  +
Sbjct: 696 IETALDAFVQVDAKGAILNWNSQAEKIFGWPRAEILGKDVFDLITIDDEGEELRSALGRI 755

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
           +L            R   ++                  +       NG   +  D    +
Sbjct: 756 VLTGEASALGIGRRREVIVRRRDGRDFKAEVSVTALKTRNGFV--FNGFFRDLTDKIAAE 813

Query: 445 RKMEIEVMQLCSI 457
            ++     ++ +I
Sbjct: 814 ERIRQS-EKMEAI 825



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/330 (10%), Positives = 92/330 (27%), Gaps = 22/330 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGKT 147
            D  G L ++S  +   +G    +MIG    D      +    + +       +      
Sbjct: 584 TDRSGILVQVSPSVEAILGYTPAEMIGRNGADFIHPDDLQKARDELRASRHGLSPRNSDG 643

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                +G      + L+    +S   +    R F I          +   +  ++   ++
Sbjct: 644 RYVHKDGRV----VTLSWTSNWSEPVQ----RHFFIGRDMTESRLAQETLRESEQLARNI 695

Query: 208 HEIKKGHSSVEKEKYDIFSQQS-------PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
            E           K  I +  S        P    +   V  L       +++       
Sbjct: 696 IETALDAFVQVDAKGAILNWNSQAEKIFGWPRAEILGKDVFDLITIDDEGEELRSALGRI 755

Query: 261 LLTSEESSLP----EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
           +LT E S+L      +      +   +  +     L+  +   F          ++A   
Sbjct: 756 VLTGEASALGIGRRREVIVRRRDGRDFKAEVSVTALKTRNGFVFNGFFRDLTDKIAAEER 815

Query: 317 EGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
             ++   E + +         +  L     +  +L    + +       ++ ++D     
Sbjct: 816 IRQSEKMEAIGQLTGGIAHDFNNILTVITGTIEILAAAVAKE--PQLAAITRMIDEAAAR 873

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
             +  + ++ +   +        ++ +  +
Sbjct: 874 GADLTQHLLAFARRQPLQPREVDVNMLVID 903



 Score = 44.6 bits (104), Expect = 0.064,   Method: Composition-based stats.
 Identities = 31/261 (11%), Positives = 66/261 (25%), Gaps = 27/261 (10%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
            +DA G +   + +  K  G    +++G  + D+  I   D    +   L  +    G+ 
Sbjct: 705 QVDAKGAILNWNSQAEKIFGWPRAEILGKDVFDLITID--DEGEELRSAL-GRIVLTGEA 761

Query: 148 TLW-----------PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRAL 196
           +               +G +    + + AL   +      GF   G              
Sbjct: 762 SALGIGRRREVIVRRRDGRDFKAEVSVTALKTRN------GFVFNGFFRDLTDKIAAEER 815

Query: 197 GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKN-KVSSLTEYYAHKDDVLK 255
            ++ +K  +                  I            K  +++++T           
Sbjct: 816 IRQSEKMEAIGQLTGGIAHDFNNILTVITGTIEILAAAVAKEPQLAAITRMIDEAAARGA 875

Query: 256 TEKYPLLTSEES----SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
                LL               +   I+  +  +      ++  S    E  +    P+ 
Sbjct: 876 DLTQHLLAFARRQPLQPREVDVNMLVIDTAKLLRPTLGEQIEIESVFQDETCAAHVDPNQ 935

Query: 312 SAYFDEGENLTPETVDKCPIP 332
            A       L     D  P  
Sbjct: 936 LATAIINLALNAR--DAMPSG 954


>gi|126651922|ref|ZP_01724114.1| sensor histidine kinase [Bacillus sp. B14905]
 gi|126591191|gb|EAZ85300.1| sensor histidine kinase [Bacillus sp. B14905]
          Length = 915

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 73/260 (28%), Positives = 129/260 (49%), Gaps = 15/260 (5%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E ++ K +L  + +     S++KS+FLA +SHE+RTPL +I+  SE++       L +  
Sbjct: 483 ELEKAKQELEESAEQLILNSNYKSEFLANMSHELRTPLNSILILSEMLAENNQDHLTDEE 542

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             E+A  I  SG  +L ++ND+LD+SK+E+GK+++ F  V++ E   +        A +K
Sbjct: 543 -AEFAKVIHSSGEDLLALINDILDLSKVEAGKLDIIFNEVNVSEVPVQIEHTFAPVAMKK 601

Query: 683 RILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN------- 734
            I    S A+N+  +   D +  +QI  N+LSNA  FT  G  + ++    +        
Sbjct: 602 NIDFHISKADNVVDVFYTDEKRFQQIVKNLLSNAFKFTEHGS-VTLAINQLAQRQLTSNM 660

Query: 735 -----EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
                + + + V DTG+G+   + +   + F Q   +   +  GTGLGL + K       
Sbjct: 661 QDISTDWLEITVSDTGIGIPKDKHQLIFESFQQADGATVRKYGGTGLGLSICKEFAKLLG 720

Query: 790 GKFYIFSTPAKGTLIEIIFP 809
           G   + S   +G++  +  P
Sbjct: 721 GWITLQSEEGQGSIFTLTIP 740


>gi|223043250|ref|ZP_03613297.1| sensor protein SrrB (Staphylococcal respiratory responseprotein B)
           [Staphylococcus capitis SK14]
 gi|222443461|gb|EEE49559.1| sensor protein SrrB (Staphylococcal respiratory responseprotein B)
           [Staphylococcus capitis SK14]
          Length = 588

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 65/354 (18%), Positives = 148/354 (41%), Gaps = 32/354 (9%)

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           S+L +  +G+  IN + +++ +N+                    F++  +   +   + +
Sbjct: 259 SLLNSMVEGVLGINDQRVVIFSNKMA-------------DDIIHFIDDFSKESIEQQIEK 305

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575
                  + LE            ++  I   +    S   + + D++             
Sbjct: 306 TFESKGTEFLEIEISTRYY--VFITSYINRIQPNGRSGIVVIIRDMT------------- 350

Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
                    K DF+A VSHE+RTP++ + G++E I +            +    +     
Sbjct: 351 -NEHNLDQMKKDFIANVSHELRTPISLLQGYTESIVDGIVTE--PDEIRDSLGVVLDESK 407

Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695
            +  +VN+LL+++++++  +++  E   +   + +  +  ++ A++  + +  +  N+  
Sbjct: 408 RLNRLVNELLNVARMDAEGLSVEKEVQPIKNLLDKMKAKYRMQADDLGLTMEFNSGNDHL 467

Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755
               D+  + Q+  N++ NA  +T  G  I + T     +  IL + DTG G+    L++
Sbjct: 468 LWDYDMDRMDQVLTNLIDNASRYTQPGDAIAV-TASKDEQYNILYISDTGTGIAPEHLQQ 526

Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
               F ++  S++   +GTGLGL + K +++ + G+  + S   KGT   I  P
Sbjct: 527 VFDRFYKVDASRKRGKQGTGLGLFICKMIIEEHGGQIDVKSELGKGTTFIIKLP 580


>gi|28898321|ref|NP_797926.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|153839423|ref|ZP_01992090.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus
           AQ3810]
 gi|260361910|ref|ZP_05774917.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus
           K5030]
 gi|260878657|ref|ZP_05891012.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus
           AN-5034]
 gi|260894876|ref|ZP_05903372.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus
           Peru-466]
 gi|28806538|dbj|BAC59810.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|149747047|gb|EDM58035.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus
           AQ3810]
 gi|308087860|gb|EFO37555.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus
           Peru-466]
 gi|308091142|gb|EFO40837.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus
           AN-5034]
 gi|308114538|gb|EFO52078.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus
           K5030]
          Length = 576

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 95/381 (24%), Positives = 171/381 (44%), Gaps = 33/381 (8%)

Query: 463 DGIAIINREGI-----ILSTNRAV---SKLFGYPVEDILRKPFTVFLEQNTPSVMNH--- 511
           D I I   +       ++STN        L G  ++  L     +  E        +   
Sbjct: 70  DFIVITRDDNRYPFKTLISTNSVFDKVEWLHGNTMDRALNGECILLFEPAKLLEFENLNS 129

Query: 512 ----YLTEILSLDLRQ-TLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQ 566
               ++  ++   +R    + I L    ++   S+        F       + DI   ++
Sbjct: 130 FVKTHVNSVILTGIRSEVTQSIILLIGAQKGHFSIENKETLRRFRPLIERAVIDIETKEK 189

Query: 567 EKN-------KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
            +        +L+ A++ AE  +  KS+FLA +SHEIRTPL +++G  ++++        
Sbjct: 190 LQRIVEVRTTQLARAREEAELANQSKSEFLAMMSHEIRTPLNSVLGMLDILRQSTL---- 245

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
           +    +  N ++ S  L+L I++D+LD+SKIESG   L+ + + L++ V+  IS  +  A
Sbjct: 246 SDEQFDALNQMECSAELLLAIISDILDLSKIESGSFQLNEQWIHLNDTVTFVISQQKQVA 305

Query: 680 NEKRILIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738
             K +        ++  +   D   + QI  N++ NAI FT SG  + +S     N+EV+
Sbjct: 306 ITKNLSFNFDCQISSDKQYWIDSTRLSQILFNLIGNAIKFTDSGS-VSVSVA-EENDEVV 363

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           + + DTG+G++  +       F Q   S   R  GTGLGL + K +V+   G+  + S  
Sbjct: 364 VSISDTGIGISRAKQAHLFTAFHQGDRSITRRFGGTGLGLAITKHLVEMMRGEISVKSRE 423

Query: 799 AKGTLIEIIFPL---YDTSHP 816
            +G+   I  P+   Y+ S P
Sbjct: 424 NEGSDFTIRIPVLTRYNQSRP 444


>gi|309782478|ref|ZP_07677202.1| phosphate regulon sensor kinase PhoR [Ralstonia sp. 5_7_47FAA]
 gi|308918815|gb|EFP64488.1| phosphate regulon sensor kinase PhoR [Ralstonia sp. 5_7_47FAA]
          Length = 442

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 75/404 (18%), Positives = 160/404 (39%), Gaps = 35/404 (8%)

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDT-----RINKRKMEIEVMQLCSILEATSDGI 465
                +      + P  +   G     +       R    ++E +  +    ++A+ +G+
Sbjct: 52  RLWRVLDSPAYGEIPSALGLWGEVYYRLHRLMKGWRTQVLQVEQQHSRFIQAIQASPNGV 111

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
            +++ E  I   N    + FG   +  LR+  T  + +        ++  +   +  + L
Sbjct: 112 LMLDGEDQIEWCNAVAEEHFGLSAKRDLRQRITHLIRRP------EFVRYLARGEFEEPL 165

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
               +G  K+  ++S +I+           L   DI++ +  +              + +
Sbjct: 166 TMHDVGPHKQ-SIISAQILPY---GEDRKLLVSQDITKLENTE--------------AMR 207

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
            DF+A VSHE++TPLT + GF E +++    PL       Y + +      +  +V DLL
Sbjct: 208 RDFVANVSHELKTPLTVLSGFLETVRD---IPLPEEDKRRYLDMMHTQAMRMQHLVEDLL 264

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
            ++ +E         PV +   + +    ++  +  +   +  +    +  +      + 
Sbjct: 265 ALATLEGNPEPPSLAPVPMQRMMLQLQHDIEALSAGRH-TVSMTCDPAV-SVCGAELELL 322

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
               N+ SNA+ +TP GG I +          +  V DTG+G+    + +  + F ++  
Sbjct: 323 SAFSNLASNAVRYTPDGGSIRLDWGVRD-GHAVYSVTDTGIGIAPEHIPRLTERFYRVDR 381

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           S+     GTGLGL + K ++  + G+  + S   KG+    +FP
Sbjct: 382 SRSRDTGGTGLGLAIVKHVLSRHGGELQVTSEHGKGSTFRAVFP 425


>gi|254456888|ref|ZP_05070316.1| sensor protein GacS [Campylobacterales bacterium GD 1]
 gi|207085680|gb|EDZ62964.1| sensor protein GacS [Campylobacterales bacterium GD 1]
          Length = 761

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 92/306 (30%), Positives = 141/306 (46%), Gaps = 12/306 (3%)

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
             +    L EI S   R  ++        + K ++  I                D     
Sbjct: 84  REISADELFEICSHFRRSMIDFSY-DKDLDSKEMANEISYIFDKNFRGILKYYTD----- 137

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
               KL  A+  A+K S  K  FL+ +SHEIRTPL AI+GF  ++ ++        ++  
Sbjct: 138 TIFQKLIDARLEADKASQAKEYFLSNMSHEIRTPLNAILGFVNLLIDEDVSK----KHRT 193

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           Y + I  SG  +L I+ND+LD SK+ SG+  +  +  SL + +S  + L    AN K I 
Sbjct: 194 YLDIILNSGENLLSIINDILDFSKLRSGEFTIEPKIFSLHDEISHTMELFVASANVKDIT 253

Query: 686 IRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744
           I +    +IP  + AD   +KQI  N LSNAI FTP+GG I +      +  + L V D+
Sbjct: 254 ITSFIDPHIPKELYADALRIKQILSNFLSNAIKFTPNGGHISVEAAC-HHGILKLSVTDS 312

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G+   ++E     F Q  +SQQ   +GTGLGL +   +     G  +  S    G+  
Sbjct: 313 GIGIAEEDIENIFTAFAQAQHSQQKNCDGTGLGLSICHQLARHMNGSVHAKSIVGNGSEF 372

Query: 805 EIIFPL 810
            +  P+
Sbjct: 373 WVEMPV 378


>gi|262275800|ref|ZP_06053609.1| multi-sensor hybrid histidine kinase [Grimontia hollisae CIP
           101886]
 gi|262219608|gb|EEY70924.1| multi-sensor hybrid histidine kinase [Grimontia hollisae CIP
           101886]
          Length = 1085

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 79/279 (28%), Positives = 133/279 (47%), Gaps = 20/279 (7%)

Query: 555 SLTMHD-ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
             +  D I    Q + +L + K++AE  S  K+ FLA +SHEIRTP+  +IG  +++   
Sbjct: 382 LSSFRDHIISRNQAREQLLYQKELAESASKAKAQFLAAMSHEIRTPMNGVIGMIDILLRS 441

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
           +     +   +  AN +  S   +L I+ND+LD S+IE+GKM +    +SL +   + + 
Sbjct: 442 KL----DMSQMSIANTVRESALSLLSIINDILDFSRIEAGKMRIDNVTLSLRQIAEQVMD 497

Query: 674 LVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-------- 724
            +   A EK + +    + ++P  +  D   +KQI  NI+ N I F+  GGQ        
Sbjct: 498 NLATEAVEKNVSLTLFVSPDVPSSLCGDPTRIKQILFNIIGNGIKFS--GGQSHRGEVQV 555

Query: 725 -IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
            I        N ++ + +RD G+G++  +LE   +PF Q   S   R  G+GLGL +++ 
Sbjct: 556 WITADIAKDGNAKISIEIRDNGIGISQDKLESIFRPFMQAEYSTTRRYGGSGLGLAISRN 615

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFPL---YDTSHPHDC 819
           +     G     S    G+   +   L    + S P  C
Sbjct: 616 IASLMGGTITANSEEGIGSTFTVNLHLRVPEENSAPDAC 654


>gi|282600301|ref|ZP_05973770.2| sensor kinase protein RcsC [Providencia rustigianii DSM 4541]
 gi|282565779|gb|EFB71314.1| sensor kinase protein RcsC [Providencia rustigianii DSM 4541]
          Length = 927

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 87/369 (23%), Positives = 169/369 (45%), Gaps = 32/369 (8%)

Query: 446 KMEIEVMQLCSILEATSDGIAII--NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
           ++E        I+ +   GI I+  +  G ILS N      F    ++  ++  ++    
Sbjct: 334 RLEEHEQFNHKIVASAPVGIIILRLSDGGNILS-NELAHNYFRLLNDEDKQRILSII--- 389

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                 ++Y+  + +                    L +  +  +          + DIS 
Sbjct: 390 --RQKSSNYIDVVTT----------------SGTHLQISFVNSRYQNEDVAICVLIDISI 431

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             Q +  L      AE+ +  KS FLA VSHE+RTPL  IIG  E+++        + + 
Sbjct: 432 RVQMEKSLQDVADAAEQANQAKSMFLATVSHELRTPLYGIIGNIELLQRYDL----SDKA 487

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
           +   + +D S +L+L I++D+LD SKIES ++ +  +  +  +  +  ++     A++K 
Sbjct: 488 VRLVSTMDNSSSLLLQIISDILDFSKIESEQLKIENKSFNCRDVFAFVLANYVPLASKKH 547

Query: 684 ILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           I + +    NIP ++ +D   ++Q+  NI++N+I FT SG  +++      +  + + ++
Sbjct: 548 ISLYSYVEPNIPDLMLSDAVRLQQVISNIVNNSIKFTDSGF-VMLHV-WKDSNYLKIEIK 605

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D+G+GMT   + +   PF Q+ +      +GTGLGL + + +++   G   + S    G+
Sbjct: 606 DSGIGMTPAVVMQLFDPFFQVYDQNNG-HKGTGLGLAICEKLINLMDGDIAVNSQAGLGS 664

Query: 803 LIEIIFPLY 811
              I  PLY
Sbjct: 665 TFTIRIPLY 673


>gi|104773979|ref|YP_618959.1| phosphate regulon sensor histidine kinase [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC 11842]
 gi|116513987|ref|YP_812893.1| Signal transduction histidine kinase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
 gi|103423060|emb|CAI97765.1| Phosphate regulon sensor histidine kinase [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC 11842]
 gi|116093302|gb|ABJ58455.1| Signal transduction histidine kinase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
          Length = 552

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 79/366 (21%), Positives = 159/366 (43%), Gaps = 40/366 (10%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            ++     +L ++ +A  +G+ +I+ +  IL +N AV  L G    D L       +++N
Sbjct: 215 EQLHHREKELKTVTDAMLEGLILIDLDDQILLSNPAVVSLLGLHDTDPLPDDVKEIIDKN 274

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISE 563
           +       +                    +  + + +              S+ + D+++
Sbjct: 275 SRLAHAEGI------------------VERNGRNIQISASPITSRKILKGTSILVVDVTK 316

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
              E+                + +F A VSHE++TPL +I+G +E+++N     +     
Sbjct: 317 EYHEEQV--------------RREFTANVSHELKTPLQSIMGSAELLENHL---VKEEDR 359

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
             +   I  S   +L +++D++ +S ++  +       ++L   V+EA+  +Q  A+   
Sbjct: 360 DSFYKKIHESSAQLLTLIDDIIRLSHLDENQ-RFEEIKLNLKSPVTEALEALQSSADRHG 418

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
           I + T+ ++    ILA+ R V +IA N++ N+I +    G+  I+       + IL+V D
Sbjct: 419 IKLETNLSDT--MILANFRLVYEIAYNLIDNSIRYNKEKGKTKITVK-EHRGQAILQVAD 475

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TG+G+      +  + F ++  S   +  GTGLGL + K  V    G   + S   KG+ 
Sbjct: 476 TGIGIPQEAQNRIFERFYRVDKSHSRKTGGTGLGLSIVKHAVQQCHGTIRLESELGKGST 535

Query: 804 IEIIFP 809
             +IFP
Sbjct: 536 FTVIFP 541


>gi|313123614|ref|YP_004033873.1| sensor protein [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312280177|gb|ADQ60896.1| Sensor protein [Lactobacillus delbrueckii subsp. bulgaricus ND02]
          Length = 552

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 81/376 (21%), Positives = 161/376 (42%), Gaps = 40/376 (10%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            ++     +L ++ +A  +G+ +I+ +  IL +N AV  L G    D L       +++N
Sbjct: 215 EQLHHREKELKTVTDAMLEGLILIDLDDQILLSNPAVVSLLGLHDTDPLPDDVKEIIDKN 274

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISE 563
           +       +                    +  + + +              S+ + D++E
Sbjct: 275 SRLAHAEGI------------------VERNGRNIQISASPITSRKILKGTSILVVDVTE 316

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
              E+                + +F A VSHE++TPL +I+G +E+++N     +     
Sbjct: 317 EYHEEQV--------------RREFTANVSHELKTPLQSIMGSAELLENHL---VKEEDR 359

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
             +   I  S   +L +++D++ +S ++  +       ++L   V+EA+  +Q  A+   
Sbjct: 360 DSFYKKIHESSAQLLTLIDDIIRLSHLDENQ-RFEEIKLNLKSPVTEALEALQSSADRHG 418

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
           I + T+ ++    ILA+ R V +IA N++ N+I +    G+  I+       + IL+V D
Sbjct: 419 IKLETNLSDT--MILANFRLVYEIAYNLIDNSIRYNKEKGKTKITVK-EHRGQAILQVAD 475

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TG+G+      +  + F ++  S   +  GTGLGL + K  V    G   + S   KG++
Sbjct: 476 TGIGIPQEAQNRIFERFYRVDKSHSRKTGGTGLGLSIVKHAVQQCHGTIRLESELGKGSI 535

Query: 804 IEIIFPLYDTSHPHDC 819
             +IFP        D 
Sbjct: 536 FTVIFPALPAGADDDS 551


>gi|298376615|ref|ZP_06986570.1| His Kinase A domain-containing protein [Bacteroides sp. 3_1_19]
 gi|298266493|gb|EFI08151.1| His Kinase A domain-containing protein [Bacteroides sp. 3_1_19]
          Length = 605

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 103/514 (20%), Positives = 193/514 (37%), Gaps = 42/514 (8%)

Query: 319 ENLTPETVDKCPIPFFVYSHGNL---FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
           + L    +D+ P+  FV    N     Y N     +T  ++ + IE         +A   
Sbjct: 114 QELINTILDRLPLGVFVKDGDNHFNYLYWNHFMEEITGIETRE-IEGHDDFEVNYNALMT 172

Query: 376 SDNNAIKPVML------YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
           ++      + +       R      +AS     I+  +         P   A        
Sbjct: 173 AEERLETDMNVIKTGLTARFKGKVKSASGDYRDIEVAKYPISLNNGKPLVLALWRDITSE 232

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSIL---EATS---DGIAIINREGIILSTNRAVSK 483
                       + K  + I  ++ CSI    ++T    D +  +N        N     
Sbjct: 233 LATENTLRRTRILTKMALRISDIRTCSIFIDPDSTHNFKDSVVTLN------DWNTMSED 286

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD--LRQTLEKITLGSTKEEKLLSL 541
           +        + +        +     ++  T +   +    +   ++     KE     +
Sbjct: 287 MIEVSWGQFISR-----AHPDDQEHYHNMFTRLCRGEISEARIEARMLFPGKKEYVWREV 341

Query: 542 RIIIKKLPFSSCYSLTM---HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
              + +       S+ +    +I E K ++  L  AK  AE     KS +LA +SHEIRT
Sbjct: 342 FATVYERDDKGRPSVILGCSTNIQERKNQELSLEEAKVKAEAADKMKSKYLADMSHEIRT 401

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
           PL AI GFSE++         +   + Y + I  +  L++ ++ND+LDISKIE+  + + 
Sbjct: 402 PLNAITGFSELMA----FADTDEERMSYYDVIKMNNQLLMQLINDILDISKIEADAIKIT 457

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718
           +E + + E +    +  +L      + +      +      D   + Q+  N+++NAI  
Sbjct: 458 YEQLDVSELMDTIYASAKLRVPG-GVKLVLEKEADHHMFGTDSMRLLQLINNLVNNAIKN 516

Query: 719 TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
           T  G  I +  T   ++++   VRDTG+G+   +L+     F +         EG GLGL
Sbjct: 517 TKEGS-ITMGYTIQPDDQLRFYVRDTGIGIDKEKLKDVFDRFVK----INDYMEGIGLGL 571

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
            + K +V    G  ++ S    G+    I P ++
Sbjct: 572 AICKGLVVKMGGSIHVTSELGVGSEFSFILPSHE 605


>gi|258404339|ref|YP_003197081.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfohalobium retbaense DSM 5692]
 gi|257796566|gb|ACV67503.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfohalobium retbaense DSM 5692]
          Length = 408

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 83/388 (21%), Positives = 158/388 (40%), Gaps = 24/388 (6%)

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
              ++ +  + R +  ++E +  ++ +IL+  SD + +++ +  ILS N+     F    
Sbjct: 21  FQEVQRKVAELRHSNEELEHKQREIQAILDGISDIMLVLSADMRILSVNQVFFDHF--EE 78

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
            + + K           +       E +          I   + +  +   L   ++  P
Sbjct: 79  PNPVGKYCFEVFRGQAKACRGCPARESMRSGEVCKETAIFKVNGRNRQYDMLASPLQDTP 138

Query: 550 FSSCYSLTM-HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                 L    D++  K+ + +   A+K+A           A V+HE+  PL  I GF++
Sbjct: 139 GQEGRVLLFKRDVTLEKEYQAQFYQAEKMATIGM-----LAAGVAHEVNNPLAGIQGFAQ 193

Query: 609 VIKN------QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
            I        +         + EY   I +  N   +IV  LL  S+         F  +
Sbjct: 194 GILRRLPRVQEAVDEELANDFQEYTETILQECNRCQEIVRTLLTFSRPR----ESAFCSL 249

Query: 663 SLDEAVSEAISLVQLYANEK-RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           S++  + + + ++Q        +L++      +P +  D   +KQ+ LN+L+NA+     
Sbjct: 250 SMNNLIRDTLKVLQHRIKRHQGLLLQEDLEPELPLVCGDEPHLKQVILNLLTNALDAIGE 309

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
            G I I T+ T + +V L V DTG G+    L+K  +PF          G GTG+GL   
Sbjct: 310 EGVITIRTSSTES-QVALCVEDTGEGIPEEHLDKLFEPFFTTKP----VGRGTGIGLSTC 364

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             +V  + G+  + S P KG+   ++ P
Sbjct: 365 YTIVHNHGGEISVKSAPEKGSRFCVVLP 392


>gi|239827300|ref|YP_002949924.1| histidine kinase [Geobacillus sp. WCH70]
 gi|239807593|gb|ACS24658.1| histidine kinase [Geobacillus sp. WCH70]
          Length = 468

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 66/248 (26%), Positives = 122/248 (49%), Gaps = 3/248 (1%)

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           +     +   K   +E   K +FLA VSHE+RTPL+ + G+SE I              +
Sbjct: 224 RLAKAFNVMAKAIAEEDMRKREFLANVSHELRTPLSYVKGYSEAILQGLV--KTEEEERK 281

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           Y   I R  + +  +V DLLD++++E   + L   P+   + + + ++  + +  +K+I 
Sbjct: 282 YVQLIHREADRMERLVRDLLDLARLEGNNVPLQKTPLVFAQVIEDTVAKYEPFLQKKQIT 341

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +     ++I  +  D   ++Q+  N+L NA+ +TP+ G+I I     S+    L +RD+G
Sbjct: 342 LNMELDHDII-LEGDADRLEQVVQNLLDNAVRYTPAEGKIHIRLKKVSDASCQLIIRDSG 400

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
            G+   +L    + F ++  ++  +  GTGLGL + K ++  + G    FS   KG  + 
Sbjct: 401 KGVPKEKLPLLGQRFYRVDQARTRKEGGTGLGLAIVKQIISLHNGTISFFSEEGKGMEVV 460

Query: 806 IIFPLYDT 813
           I  P+Y  
Sbjct: 461 IQLPIYTE 468


>gi|150008033|ref|YP_001302776.1| putative two-component system sensor histidine kinase
           [Parabacteroides distasonis ATCC 8503]
 gi|149936457|gb|ABR43154.1| putative two-component system sensor histidine kinase
           [Parabacteroides distasonis ATCC 8503]
          Length = 622

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 103/514 (20%), Positives = 193/514 (37%), Gaps = 42/514 (8%)

Query: 319 ENLTPETVDKCPIPFFVYSHGNL---FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
           + L    +D+ P+  FV    N     Y N     +T  ++ + IE         +A   
Sbjct: 131 QELINTILDRLPLGVFVKDGDNHFNYLYWNHFMEEITGIETRE-IEGHDDFEVNYNALMT 189

Query: 376 SDNNAIKPVML------YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
           ++      + +       R      +AS     I+  +         P   A        
Sbjct: 190 AEERLETDMNVIKTGLTARFKGKVKSASGDYRDIEVAKYPISLNNGKPLVLALWRDITSE 249

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSIL---EATS---DGIAIINREGIILSTNRAVSK 483
                       + K  + I  ++ CSI    ++T    D +  +N        N     
Sbjct: 250 LATENTLRRTRILTKMALRISDIRTCSIFIDPDSTHNFKDSVVTLN------DWNTMSED 303

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD--LRQTLEKITLGSTKEEKLLSL 541
           +        + +        +     ++  T +   +    +   ++     KE     +
Sbjct: 304 MIEVSWGQFISR-----AHPDDQEHYHNMFTRLCRGEISEARIEARMLFPGKKEYVWREV 358

Query: 542 RIIIKKLPFSSCYSLTM---HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
              + +       S+ +    +I E K ++  L  AK  AE     KS +LA +SHEIRT
Sbjct: 359 FATVYERDDKGRPSVILGCSTNIQERKNQELSLEEAKVKAEAADKMKSKYLADMSHEIRT 418

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
           PL AI GFSE++         +   + Y + I  +  L++ ++ND+LDISKIE+  + + 
Sbjct: 419 PLNAITGFSELMA----FADTDEERMSYYDVIKMNNQLLMQLINDILDISKIEADAIKIT 474

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718
           +E + + E +    +  +L      + +      +      D   + Q+  N+++NAI  
Sbjct: 475 YEQLDVSELMDTIYASAKLRVPG-GVKLVLEKEADHHMFGTDSMRLLQLINNLVNNAIKN 533

Query: 719 TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
           T  G  I +  T   ++++   VRDTG+G+   +L+     F +         EG GLGL
Sbjct: 534 TKEGS-ITMGYTIQPDDQLRFYVRDTGIGIDKEKLKDVFDRFVK----INDYMEGIGLGL 588

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
            + K +V    G  ++ S    G+    I P ++
Sbjct: 589 AICKGLVVKMGGSIHVTSELGVGSEFSFILPSHE 622


>gi|84503541|ref|ZP_01001592.1| Probable sensory transduction histidine kinase [Oceanicola
           batsensis HTCC2597]
 gi|84388031|gb|EAQ01079.1| Probable sensory transduction histidine kinase [Oceanicola
           batsensis HTCC2597]
          Length = 837

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 98/523 (18%), Positives = 192/523 (36%), Gaps = 11/523 (2%)

Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLL 350
             +  +       +    P L   +D     T    D       +         +     
Sbjct: 45  AAEQVAGAPRPSDAKAALPELRRRYDILYARTQTLRDSVMSRPAIAGTDIGEEFSALAPQ 104

Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
           +       D      ++ +   P+L+   A     + R         A           S
Sbjct: 105 IFAMADQIDAADTALIAAV---PELTPRLARLREPVRRILTFGNHTLAVQADATRQDIAS 161

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470
           +                        E   +    R+      +L +I   + D I + + 
Sbjct: 162 VLTRLAAAVAVLLVTLATMTLLFRREAGVSDRQMRENRATSARLETIFSTSRDAIVVFDP 221

Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530
           +G ILS NRA  ++FG   +          L  +T  V        L       L+    
Sbjct: 222 QGRILSMNRAGQQMFGTGGDARQAARIDDLLTSDTDGVAKPVSGRELFGTAAAGLKTGLR 281

Query: 531 --GSTKEEKLLSLRIII--KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
             G   + +   + I +     P S      + D+S     +++L  ++  A      K+
Sbjct: 282 LKGLRSDGRAFPVEISVDTAARPGSDICVGVIRDVSRQAAAEDELKQSRDTALAGEKAKA 341

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQ-RFGPLGNPRYIE-YANYIDRSGNLVLDIVNDL 644
            FL  VSHE+RTPL  I+G  ++++++    P  +    + Y   +  +   +L +V+++
Sbjct: 342 RFLGVVSHEMRTPLNGILGTVQLVEDEIERSPEDSSTVRDTYLPVLRNASQSLLSLVDEV 401

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704
           LD+++IE G + L   P        + +      A +    I      ++  ++ D   +
Sbjct: 402 LDLTQIE-GGVRLAARPFDPGALARDLVLAESARAADNGNEITLRGDRDVGPVIGDPERL 460

Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764
           +Q+  N+L+NA+ FT  G +I +       + V  ++ DTG GM+  EL+     F +  
Sbjct: 461 RQVLGNLLANAVKFTRDG-RISLEMHRAGADIVEFQISDTGFGMSREELDTVFDDFVRTG 519

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
            + + + +GTGLGL +A+ +V+A  G+  + S   +G+L  + 
Sbjct: 520 AAVENQVQGTGLGLGIARTIVEAMGGEIGVESEAGEGSLFWVR 562



 Score = 40.0 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 24/265 (9%), Positives = 54/265 (20%), Gaps = 17/265 (6%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D  G +  ++    +  G         R+ D+           +           G  T 
Sbjct: 220 DPQGRILSMNRAGQQMFGTGGDARQAARIDDLLTSDTDGVAKPVSGRELFGTAAAGLKTG 279

Query: 150 WPIEG---TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
             ++G        P++++                 G++             K+       
Sbjct: 280 LRLKGLRSDGRAFPVEISV----DTAARPGSDICVGVIRDVSRQAAAEDELKQSRDTALA 335

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
             + K     V   +              +++++    E  +   D           S  
Sbjct: 336 GEKAKARFLGVVSHEMRTPLNGILGTVQLVEDEIERSPEDSSTVRDTYLPVLRNASQSLL 395

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
           S + E  D   I        + F              +               ++ P   
Sbjct: 396 SLVDEVLDLTQIEGGVRLAARPFDPGALARDLVLAESARAADNGNEITLRGDRDVGPVIG 455

Query: 327 D----------KCPIPFFVYSHGNL 341
           D                     G +
Sbjct: 456 DPERLRQVLGNLLANAVKFTRDGRI 480


>gi|83858886|ref|ZP_00952408.1| sensor histidine kinase/response regulator [Oceanicaulis alexandrii
           HTCC2633]
 gi|83853709|gb|EAP91561.1| sensor histidine kinase/response regulator [Oceanicaulis alexandrii
           HTCC2633]
          Length = 570

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 77/233 (33%), Positives = 121/233 (51%), Gaps = 11/233 (4%)

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
           +  KS FLA +SHEIRTPL  ++G + V+   +     + R  +    I  SG+ +L  +
Sbjct: 181 NQAKSQFLANMSHEIRTPLNGVLGMTAVLALSKL----DERQRKAVEVIRMSGDHLLSTL 236

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI----PRI 697
           ND+LD++KI++G+M++      L +   +  +L    A +  +     +   +     R+
Sbjct: 237 NDILDLAKIDAGQMDVETVEFVLGDVAEQIEALYAPQAEKAGLSFSLRYEQGVSAHSLRV 296

Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-TSNEEVILRVRDTGVGMTNYELEKA 756
             D   + QI  N++SNA+ FT  GG + +S       EE+ILRVRDTG GMT  +LE+ 
Sbjct: 297 -GDPTRLSQIVHNLVSNALKFTRKGG-VRLSFAQDEDTEELILRVRDTGCGMTVDQLERV 354

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             PF Q   S      GTGLGL + K +++   G+  + S P  GTL  +  P
Sbjct: 355 FMPFTQADASTSREYGGTGLGLSIVKRLLEVMKGRIDVESEPDVGTLFTVYLP 407


>gi|162448894|ref|YP_001611261.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
 gi|161159476|emb|CAN90781.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
          Length = 918

 Score =  281 bits (718), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 113/697 (16%), Positives = 220/697 (31%), Gaps = 77/697 (11%)

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP-------HLRMKNK 239
            R     R + +        L         V   +  +  Q                   
Sbjct: 78  RREVERLRVITQHERGLLDALLSESPHGIIVSDIQGKLILQNRASERIWAGSSTAENVEG 137

Query: 240 VSSLTEYYA--HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297
                 ++      +         L+  E+   E+  F   +            L +   
Sbjct: 138 WGRYRAFHPDGRPFEGGDWSMARCLSRRETVPAEEIHFQRFDGTHGMLLGSCAPLFSPEG 197

Query: 298 ESFEYLSHRNHPSLSAYFDEGEN----LTPETVDKCPIPFFVYSH-GNLFYANPSFLLLT 352
           E    +S     +     +            T+             G + + N     LT
Sbjct: 198 EMLGAVSIFADITQFKQLEADLRVSKTKFSTTLKSIGDAVISTDGTGRIDFMNAVAETLT 257

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
            +   +  +            + + ++   PV         I        ++ +    LA
Sbjct: 258 GWTLDEAKDRRLS-DVFRIISEQTRHDLDNPVTEVLRHGGIIGLDDTTLLLRKDGSE-LA 315

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTR----------INKRKMEIEVMQLCSILEA-- 460
           +        ++  E +    +  +  + R             R++ +  +   S L    
Sbjct: 316 IDSNGAPIRSEEGELVGLVLVFRDVTEKRLADKRRYFIGEASRQLALSGLDYESTLANVA 375

Query: 461 ------TSDGIAI--INREG---------------------------------IILSTNR 479
                  +D   +  +  +G                                  + +  R
Sbjct: 376 RLAVPHIADATVVDIVEPDGSLGRLAAVHASDTKKALGRDLPARYPTDPEVPRAVHAVLR 435

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQ---NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
               L    VE +  +            + +    YL  +  L +R  +        +  
Sbjct: 436 CGESLLLPEVEGMAWQRAASLKPGNECWSGAHDPAYLALLRELGVRSAMIVPLRARDRTR 495

Query: 537 KLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
             ++L        ++        ++  +       +   + +++ +  K +FLA +SHE+
Sbjct: 496 GAITLLSTEPSRRYTVEDLALAEELCNFAALALDNAQLYRESQQVNRAKDEFLATLSHEL 555

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTPLTAI+G++ +++    G L    ++     I+R+G L   +V DLLD S+I +GK+ 
Sbjct: 556 RTPLTAILGWARMLRQ---GSLKPDTHVRALEAIERNGTLQAQLVEDLLDASRIITGKLR 612

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716
           L    V L   ++ AI  V+  A+ K I +      N   I  D   ++Q+  N+LSNAI
Sbjct: 613 LDVMLVDLPPIINAAIDAVRHGADAKGIELLVQLDPNAGPISGDQTRLQQVVWNLLSNAI 672

Query: 717 HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
            FTP GG++ I     +     ++V DTG G+    L      F Q  ++      G GL
Sbjct: 673 KFTPRGGKVSIQLG-RAEGLARIQVSDTGQGIVPEFLPYVFDRFRQADSTSTRPHSGLGL 731

Query: 777 GLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFPLYD 812
           GL +A+ +++ + G     S    KG    +  PL  
Sbjct: 732 GLAIARHLIELHGGTVKAESAGDGKGATFTVDIPLAP 768



 Score =  115 bits (289), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 37/371 (9%), Positives = 93/371 (25%), Gaps = 17/371 (4%)

Query: 237 KNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS 296
            +         A                   ++ E +          +       L  + 
Sbjct: 8   PDMPIVAALAQARALLYDAARTTEQRRLIGPTVMEIDRAIVSLDPTASASFELTPLAASV 67

Query: 297 KESFEYLSHRNHPSLSAYF--DEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLT- 352
                 +                   L    + + P    V    G L   N +   +  
Sbjct: 68  PPVDTEIEALRREVERLRVITQHERGLLDALLSESPHGIIVSDIQGKLILQNRASERIWA 127

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
              + +++E  G         +  +              T  A                 
Sbjct: 128 GSSTAENVEGWGRYRAFHPDGRPFEGGDWSMARCLSRRETVPAEEIHFQRF---DGTHGM 184

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG 472
           +        +   E +    I  +    +  +  + +   +  + L++  D +   +  G
Sbjct: 185 LLGSCAPLFSPEGEMLGAVSIFADITQFKQLEADLRVSKTKFSTTLKSIGDAVISTDGTG 244

Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY---LTEILSLDLRQTLEKIT 529
            I   N     L G+ +++   +  +      +    +     +TE+L       L+  T
Sbjct: 245 RIDFMNAVAETLTGWTLDEAKDRRLSDVFRIISEQTRHDLDNPVTEVLRHGGIIGLDDTT 304

Query: 530 LGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
           L   K+   L++      +           L   D++E +    +     + + + +   
Sbjct: 305 LLLRKDGSELAIDSNGAPIRSEEGELVGLVLVFRDVTEKRLADKRRYFIGEASRQLALSG 364

Query: 586 SDF---LARVS 593
            D+   LA V+
Sbjct: 365 LDYESTLANVA 375



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 50/396 (12%), Positives = 105/396 (26%), Gaps = 23/396 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCD----VSDILHIDPNNHIGDLLKRQNT-- 142
            D  G +  ++       G    +    RL D    +S+    D +N + ++L+      
Sbjct: 240 TDGTGRIDFMNAVAETLTGWTLDEAKDRRLSDVFRIISEQTRHDLDNPVTEVLRHGGIIG 299

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRAL----GK 198
               T L   +G+   + ID    PI S   E  G     +                 G+
Sbjct: 300 LDDTTLLLRKDGS--ELAIDSNGAPIRSEEGELVGL--VLVFRDVTEKRLADKRRYFIGE 355

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
              +      + +   ++V +      +  +    +     +  L   +A          
Sbjct: 356 ASRQLALSGLDYESTLANVARLAVPHIADATVVDIVEPDGSLGRLAAVHASDTKKALGRD 415

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
            P     +  +P                +  G     +          +     AY    
Sbjct: 416 LPARYPTDPEVPRAVHAVLRCGESLLLPEVEGMAWQRAASLKPGNECWSGAHDPAYLALL 475

Query: 319 ENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL------LDA 372
             L   +    P+     + G +   +         + +   E     + L      L  
Sbjct: 476 RELGVRSAMIVPLRARDRTRGAITLLSTEPSRRYTVEDLALAEELCNFAALALDNAQLYR 535

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
                N A    +   S       +A L   +  R+ SL                  Q  
Sbjct: 536 ESQQVNRAKDEFLATLSHELRTPLTAILGWARMLRQGSLKPDTHVRALEAIERNGTLQAQ 595

Query: 433 IEPEDVDTRI---NKRKMEIEVMQLCSILEATSDGI 465
           +  + +D       K ++++ ++ L  I+ A  D +
Sbjct: 596 LVEDLLDASRIITGKLRLDVMLVDLPPIINAAIDAV 631


>gi|116333281|ref|YP_794808.1| Signal transduction histidine kinase [Lactobacillus brevis ATCC
           367]
 gi|116098628|gb|ABJ63777.1| Signal transduction histidine kinase [Lactobacillus brevis ATCC
           367]
          Length = 447

 Score =  281 bits (718), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 89/427 (20%), Positives = 180/427 (42%), Gaps = 38/427 (8%)

Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
             ++R     + ++  I+     +  +         + P       I       R  +R+
Sbjct: 51  RWAERRITILTKKVEGIRHAETPAHVLLS------PRDPFYRLALQINYLQTHQRKVQRQ 104

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
           +  +  +  ++L+    G+ +I+R   +   N A+ +          ++P +      T 
Sbjct: 105 VAGQNQEFATLLDYLPIGVMVIDRYRKVELANPAMEQFL--------QQPISPRRHPFTQ 156

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKE---EKLLSLRIIIKKLPFSSCYSLTMH-DIS 562
            V    L  +++  L +   +           E+ +  R I           L +  D++
Sbjct: 157 DVRQFELASLINSALSERQTQHQTLKLPGSPHERTVDARAIYTATSQDYFQVLVLLYDVT 216

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E                     + DF++  SHE++TP+TAI GF++ +           +
Sbjct: 217 E--------------VYAVEQMQMDFMSNASHELKTPVTAISGFAKTLLAGAKD--DPEK 260

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
            +E+   ID+    +++++ND+L IS IESG  N+    V L   V+  ++L+   A   
Sbjct: 261 SVEFLQIIDQQSERLVELINDVLTISHIESGN-NVEMTTVPLGHLVASQVNLLTPLATVN 319

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
            I +    A+ + ++  D R + QI  N+LSNAI +    G++ ++ T T+++   L V+
Sbjct: 320 HITLHNQVASEL-QVTTDQRKLDQILKNVLSNAIKYNRPQGRVTVTATVTAHDW-QLIVQ 377

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIR-GEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
           DTG+G+   + ++  + F +   S   +   GTGLGL + + +V +  GK  + S    G
Sbjct: 378 DTGIGIAPQDQQRVFERFYRADVSHSNQLVSGTGLGLAIVRELVQSLNGKIDLQSELGTG 437

Query: 802 TLIEIIF 808
           T + + F
Sbjct: 438 TTVTMTF 444


>gi|187929099|ref|YP_001899586.1| multi-sensor signal transduction histidine kinase [Ralstonia
           pickettii 12J]
 gi|187725989|gb|ACD27154.1| multi-sensor signal transduction histidine kinase [Ralstonia
           pickettii 12J]
          Length = 442

 Score =  281 bits (718), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 75/404 (18%), Positives = 160/404 (39%), Gaps = 35/404 (8%)

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDT-----RINKRKMEIEVMQLCSILEATSDGI 465
                +      + P  +   G     +       R    ++E +  +    ++A+ +G+
Sbjct: 52  RLWRVLDSPAYGEIPSALGLWGEVYYRLHRLMKGWRTQVLQVEQQHSRFIQAIQASPNGV 111

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
            +++ E  I   N    + FG   +  LR+  T  + +        ++  +   +  + L
Sbjct: 112 LMLDGEDQIEWCNAVAEEHFGLSAKRDLRQRITHLIRRP------EFVRYLARGEFEEPL 165

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
               +G  K+  ++S +I+           L   DI++ +  +              + +
Sbjct: 166 TMHDVGPHKQ-SIISAQILPY---GEDRKLLVSQDITKLENTE--------------AMR 207

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
            DF+A VSHE++TPLT + GF E +++    PL       Y + +      +  +V DLL
Sbjct: 208 RDFVANVSHELKTPLTVLSGFLETVRD---IPLPEEDKRRYLDMMHTQAMRMQHLVEDLL 264

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
            ++ +E         PV +   + +    ++  +  +   +  +    +  +      + 
Sbjct: 265 ALATLEGNPEPPSLAPVPMQRMMLQLQHDIEALSAGRH-TVSMTCDPAV-SVCGAELELL 322

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
               N+ SNA+ +TP GG I +          +  V DTG+G+    + +  + F ++  
Sbjct: 323 SAFSNLASNAVRYTPDGGTIRLDWGVRD-GHAVYSVTDTGIGIAPEHIPRLTERFYRVDR 381

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           S+     GTGLGL + K ++  + G+  + S   KG+    +FP
Sbjct: 382 SRSRDTGGTGLGLAIVKHVLSRHGGELQVTSEHGKGSTFRAVFP 425


>gi|104780548|ref|YP_607046.1| GacS sensor kinase protein [Pseudomonas entomophila L48]
 gi|95109535|emb|CAK14236.1| GacS sensor kinase protein [Pseudomonas entomophila L48]
          Length = 918

 Score =  281 bits (718), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 101/468 (21%), Positives = 190/468 (40%), Gaps = 41/468 (8%)

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
             A      + A  L   +      L         A   +     +      +       
Sbjct: 63  RQAPAQLERIAAQALEQTDVRAVAFLAADRTRLAHAGPSMLNQPPSGGTGTQLLQR--TG 120

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
            +     MP  G   +     +    +  E  +L   +E        ++ +G +L   R 
Sbjct: 121 NDATRYLMPVFGHHRD-----LATDAVPAEAERLLGWVE------IELSHDGTLL---RG 166

Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI-----------LSLDLRQTLEKIT 529
              LF   +  I+    T  L       +N  +  I           L   L        
Sbjct: 167 YRNLFTSLLLIIVCLSLTALLAVRMSRTINGPINRIKHTVNQLKDGHLEERLPAMGSHEL 226

Query: 530 LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHK 585
                    ++  +                D+ +  +       +L  A+K A + S  K
Sbjct: 227 DELAAGINRMAETLHSAHEELQHSIDQATEDVRQNLETIEIQNIELDMARKEALEASRIK 286

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
           S+FLA +SHEIRTPL  I+GF+ +++     P    R ++Y   I++S + +L I+N++L
Sbjct: 287 SEFLANMSHEIRTPLNGILGFTHLLQKSELTP----RQLDYLGTIEKSADNLLGIINEIL 342

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI-RTSFANNIPRILADLRSV 704
           D SKIE+GK+ L   P +L + + + ++++   A+ K++ +    + +    ++ D   +
Sbjct: 343 DFSKIEAGKLVLDSIPFNLRDLIQDTLTILAPAAHAKQLELLSLVYRDTPLSLVGDPLRL 402

Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDTGVGMTNYELEKAMKPF 760
           KQI  N++SNAI FT  G  I++      ++    ++ + V+DTG+G++  ++    + F
Sbjct: 403 KQILTNLVSNAIKFTREG-TIVVRAMLEDDQDDTVQLRISVQDTGIGLSPQDVRTLFQAF 461

Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            Q  NS   +  GTGLGL ++K +++   G+  + STP +G+   I  
Sbjct: 462 SQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSQFWISL 509


>gi|224369669|ref|YP_002603833.1| two-component hybrid sensor and transmitter protein
           [Desulfobacterium autotrophicum HRM2]
 gi|223692386|gb|ACN15669.1| two-component hybrid sensor and transmitter protein
           [Desulfobacterium autotrophicum HRM2]
          Length = 617

 Score =  281 bits (718), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 90/325 (27%), Positives = 152/325 (46%), Gaps = 12/325 (3%)

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556
               +      ++  +L ++ +   +       +G     + L +     +L   S    
Sbjct: 199 LGGIIAICVSLILVSFLRQLQAYLKQLHHSMEIIGRGDLSEKLEVSGN-DELSQISGAIN 257

Query: 557 TMHD-----ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
              D      +  +Q  N+LS AK+ AEK S  K+ FLA +SHE RTPL AIIGFS  I 
Sbjct: 258 LTTDNLKRLHTVLEQRVNELSLAKEEAEKASRAKNVFLANMSHEFRTPLNAIIGFSSHIA 317

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
                   +P   ++ + I  SGN +L ++N +L +SKIE+GK  ++    +L + +++ 
Sbjct: 318 Q---SAALDPEERKHLSIISNSGNHLLTLINSVLAMSKIEAGKTEVNERTTNLQDLLADI 374

Query: 672 ISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
            ++  L A EK +        ++P  +  D   + QI +N+++NAI FT  GG + +   
Sbjct: 375 HAMFSLKAAEKALSFDLICHPDLPAIVQVDDVKLWQILINLINNAIKFTARGG-VKVIVE 433

Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
                E++ ++RDTG GM   E      PF Q+  + Q   EGTGLGL + ++ +    G
Sbjct: 434 KNDTPEILFKIRDTGPGMAKDEQAMIFDPFVQL-ATDQGINEGTGLGLAICRSYIHLMGG 492

Query: 791 KFYIFSTPAKGTLIEIIFPLYDTSH 815
           +  + S   KG+      PL   + 
Sbjct: 493 EVKVDSVRGKGSTFFFSIPLKTLAE 517


>gi|212712306|ref|ZP_03320434.1| hypothetical protein PROVALCAL_03392 [Providencia alcalifaciens DSM
           30120]
 gi|212685052|gb|EEB44580.1| hypothetical protein PROVALCAL_03392 [Providencia alcalifaciens DSM
           30120]
          Length = 928

 Score =  281 bits (718), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 89/369 (24%), Positives = 167/369 (45%), Gaps = 32/369 (8%)

Query: 446 KMEIEVMQLCSILEATSDGIAII--NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
           ++E        I+ +   GI I+  +  G ILS N      F    +D  ++  T+    
Sbjct: 334 RLEEHEQFNHKIVASAPVGIIILRLSDGGNILS-NELAHNYFRLLNDDDKQRILTII--- 389

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                 ++Y+  + +                    L +  +  +          + DIS 
Sbjct: 390 --RQKSSNYIDVVAT----------------NGTHLQISFVNSRYQNEDVAICVLIDISI 431

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             Q +  L      AE+ +  KS FLA VSHE+RTPL  IIG  E+++        + + 
Sbjct: 432 RVQMEKSLQDVADAAEQANQAKSMFLATVSHELRTPLYGIIGNIELLQRYEL----SDKA 487

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
           +   + +D S +L+L I++D+LD SKIES ++ +  +  +     +  ++     A +K+
Sbjct: 488 VRLVSTMDNSSSLLLQIISDILDFSKIESKQLKIENKLFNCRNVFAYVLANYVPLATKKQ 547

Query: 684 ILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           + + +    NIP ++ +D   ++Q+  NI++N+I FT SG  +++         + + V+
Sbjct: 548 VSLYSYIEPNIPDLMLSDPVRLQQVISNIVNNSIKFTDSGF-VMLHV-WKDENYLKIEVK 605

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D+G+GMT   + +   PF Q+ +      +GTGLGL + + +++   G   + S    G+
Sbjct: 606 DSGIGMTPAVVMQLFDPFFQVYDQNNG-HKGTGLGLAICEKLINLMDGDIAVDSQAGLGS 664

Query: 803 LIEIIFPLY 811
              I  PLY
Sbjct: 665 RFTIRIPLY 673


>gi|17549895|ref|NP_523235.1| composite two-component sensor kinase and response regulator hybrid
           transcription regulator protein [Ralstonia solanacearum
           GMI1000]
 gi|17432151|emb|CAD18827.1| probable composite two-component regulatory (sensor kinase and
           response regulator hybrid) transcription regulator
           protein [Ralstonia solanacearum GMI1000]
          Length = 796

 Score =  281 bits (718), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 102/634 (16%), Positives = 211/634 (33%), Gaps = 49/634 (7%)

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           ++  G               SP      +    +      H       +       +   
Sbjct: 35  DLLDGTRLHVSAAARQRWGMSPETLCGPREHWLAHVHSGDHAALRAAWQGLA----QGRD 90

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS----HRNHPSLSAYFDEGENLTPE 324
              +  +   +  ++  ++    L      +   +             A   E E     
Sbjct: 91  FALEYRWIGTDGAEHRVRECGYRLPAQGGAATHAVGVVEDMTQRLRTLAELTESEFQLQW 150

Query: 325 TVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
             +  P P       + + +AN ++       + D +        + +         +  
Sbjct: 151 LAESIPFPIVQLGPDHCIRFANHAYAQRFGLPAADVLGR-----HVRELMGHEAYQRVLA 205

Query: 384 VMLYRSDRTCIAASARL-HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
            ++       +     L +         +   + P    +   + +    I  +  + + 
Sbjct: 206 HLMKGFAGQRVDFEMELEYPYVGPGRRFIHAAYTPQRGPD--GKVVALVCIIEDITERKE 263

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF-L 501
            +R+      +  +++E   D IA ++     +  NRAV++ FG P  +++ +  +   L
Sbjct: 264 AERERFRHQREFVTLVENAPDIIARLDPALRCVYINRAVTEAFGVPSGELIGQALSDSGL 323

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLT 557
                  +             Q L            +      +              L 
Sbjct: 324 PACITGPLEAAAQCAFDTGGEQALTLHLEADAARPHVAHYNARVIPEADRHGEMESALLI 383

Query: 558 MHDISEWKQEKNKLS-------HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
           ++D+SE  + + + +        A+  AE  +  +  FLA VSHE+R+PL  I  ++ V+
Sbjct: 384 IYDVSERTEAERERNALLLREQAARAQAEAAAHARDQFLAVVSHELRSPLNGIQSWAYVL 443

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
           +NQ     G+         I       + ++ DLLD +++ SGK+ L  +P  L  A+  
Sbjct: 444 ENQL--AEGSQPVQRALAGIRTGVAQQVRLIEDLLDATRVMSGKLRLTRQPFPLRTALER 501

Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
           A+  V+  A E+RI +  +++     I  D   ++QI  N+LSNAI FT  GG + ++  
Sbjct: 502 ALDSVRAQAAERRITLHEAWSLGTEEIDGDADRIQQIVWNLLSNAIKFTQEGGDVWLAAD 561

Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG--------EGTGLGLPLAK 782
            +  E   + VRD G G+    +     PF Q   S   R                   K
Sbjct: 562 VS-GEVARIVVRDNGRGIAPAFVPHLFDPFRQADGSHTRRTGGLGLGLAL--------VK 612

Query: 783 AMVDANMGKFYIFS-TPAKGTLIEIIFPLYDTSH 815
            + + + G  +  S     G +  +  PL++ + 
Sbjct: 613 RLTELHGGLVHAQSDGEQHGAIFTVYLPLHEGAE 646



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/400 (9%), Positives = 91/400 (22%), Gaps = 17/400 (4%)

Query: 56  DQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIG 115
           D  Q   +     +SE    +            +     ++  +    +  G  A  ++G
Sbjct: 130 DMTQRLRTLAELTESEFQLQWLAESIPFPIV-QLGPDHCIRFANHAYAQRFGLPAADVLG 188

Query: 116 MRLCDV-SDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNRE 174
             + ++     +     H+      Q   +     +P  G      I  A  P    + +
Sbjct: 189 RHVRELMGHEAYQRVLAHLMKGFAGQRVDFEMELEYPYVGPGRRF-IHAAYTPQRGPDGK 247

Query: 175 FSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP---- 230
                   I+       +      R  ++F  L E      +                  
Sbjct: 248 VVAL--VCIIEDITERKEAERERFRHQREFVTLVENAPDIIARLDPALRCVYINRAVTEA 305

Query: 231 --PPHLRMKNKVSSLTEYYAHKDDVLKTEKY-PLLTSEESSLPEQEDFHTINLNQYTKKQ 287
              P   +  +  S +   A     L+        T  E +L    +      +      
Sbjct: 306 FGVPSGELIGQALSDSGLPACITGPLEAAAQCAFDTGGEQALTLHLEADAARPHVAHYNA 365

Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPS 347
                 +   E    L      S     +   N                      +A   
Sbjct: 366 RVIPEADRHGEMESALLIIYDVSERTEAERERNAL-----LLREQAARAQAEAAAHARDQ 420

Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
           FL +  ++    +      + +L+      +  ++  +                 +   R
Sbjct: 421 FLAVVSHELRSPLNGIQSWAYVLENQLAEGSQPVQRALAGIRTGVAQQVRLIEDLLDATR 480

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
             S  +         +       + +  +  + RI   + 
Sbjct: 481 VMSGKLRLTRQPFPLRTALERALDSVRAQAAERRITLHEA 520



 Score = 51.2 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 28/255 (10%), Positives = 63/255 (24%), Gaps = 10/255 (3%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK-RQNTWYGK 146
            +D       I+  + +  G  + ++IG  L D      I                    
Sbjct: 288 RLDPALRCVYINRAVTEAFGVPSGELIGQALSDSGLPACITGPLEAAAQCAFDTGGEQAL 347

Query: 147 TTLWPIEGTNLYVPID-LAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           T     +    +V       +P   R+ E        I++      +       L  +  
Sbjct: 348 TLHLEADAARPHVAHYNARVIPEADRHGEME--SALLIIYDVSERTEAERERNALLLREQ 405

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
                 +  +    +   + S +   P   +++    L    A     ++     + T  
Sbjct: 406 AARAQAEAAAHARDQFLAVVSHELRSPLNGIQSWAYVLENQLAEGSQPVQRALAGIRTGV 465

Query: 266 ESSLPEQEDFHTI------NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
              +   ED           L    +     T    + +S    +     +L   +  G 
Sbjct: 466 AQQVRLIEDLLDATRVMSGKLRLTRQPFPLRTALERALDSVRAQAAERRITLHEAWSLGT 525

Query: 320 NLTPETVDKCPIPFF 334
                  D+     +
Sbjct: 526 EEIDGDADRIQQIVW 540


>gi|254229567|ref|ZP_04922980.1| Signal transduction histidine kinase [Vibrio sp. Ex25]
 gi|262394235|ref|YP_003286089.1| signal transduction histidine kinase [Vibrio sp. Ex25]
 gi|151937940|gb|EDN56785.1| Signal transduction histidine kinase [Vibrio sp. Ex25]
 gi|262337829|gb|ACY51624.1| signal transduction histidine kinase [Vibrio sp. Ex25]
          Length = 573

 Score =  281 bits (718), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 98/431 (22%), Positives = 187/431 (43%), Gaps = 56/431 (12%)

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATS--------------------------D 463
           Q  ++   V+ +  +++  +   +  +IL A S                          D
Sbjct: 11  QEALQEALVELKQARQRERLLADENKAILSAISAMSEAKNRHEIFTGLNNVLKKYINFDD 70

Query: 464 GIAIINREGI-----ILSTNRAV---SKLFGYPVEDILRKPFTVFLEQNTPSVMN----- 510
            I +   +       ++STN      S L G   E  L     +  E +  +        
Sbjct: 71  FIVLTRDDERYSFKTLISTNSVFDNISWLHGNASERALNGECILLFEPDRLAEFINLNSF 130

Query: 511 --HYLTEILSLDLRQTLEKITLGSTK-EEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQE 567
              ++  ++   +R  + +  +     ++   S+        F       + DI   ++ 
Sbjct: 131 IKSHVNSVVLTGIRSEVTQTVILLIGAKKGHFSIENKETLRRFRPLIERAVIDIETKEKL 190

Query: 568 KN-------KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           +        +L+ A++ AE  +  KS+FLA +SHEIRTPL +++G  +++K        +
Sbjct: 191 QRIVEVRTTQLAKAREEAELANRSKSEFLAMMSHEIRTPLNSVLGMLDILKQSTL----S 246

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
              I+  + ++ S  L+L I++D+LD+SKIESG+  L+ + V+L + V+  IS  +  A 
Sbjct: 247 EEQIDALSQMECSAELLLAIISDILDLSKIESGRFQLNEQWVNLRDTVTFVISQQKQIAK 306

Query: 681 EKRILIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
           +K +  + +       +   D   + QI  N++ NAI FT  G ++ +S +   + E+++
Sbjct: 307 KKSLQFKLNCMVTTDKQFWIDSTRLSQILFNLIGNAIKFTDEG-EVKVSVS-EQDTELVI 364

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            + DTG+G++  + E     F Q   S   R  GTGLGL + K +V+   GK  + S   
Sbjct: 365 SISDTGIGISKAKQEHLFTAFHQGDRSITRRFGGTGLGLAITKHLVEMMRGKIIVKSDEH 424

Query: 800 KGTLIEIIFPL 810
            G+   I  P+
Sbjct: 425 VGSTFTIKIPV 435


>gi|163846960|ref|YP_001635004.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222524780|ref|YP_002569251.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
 gi|163668249|gb|ABY34615.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222448659|gb|ACM52925.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
          Length = 751

 Score =  281 bits (718), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 106/652 (16%), Positives = 216/652 (33%), Gaps = 58/652 (8%)

Query: 184 VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKE--KYDIFSQQSPPPHLRMKNKVS 241
           +   R  +         D+    + + ++   + E+    +D     S     R+ N  +
Sbjct: 111 LQGTRRSDVRLDRLMAFDRSGRTIVDFERPPLAGEETYITHDSIDLSSAWFTSRILNGEA 170

Query: 242 SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ-NNSKESF 300
                           +   L +        E    + +           +Q +      
Sbjct: 171 DERGDKYAGLIQFSNTQTLYLATIAPVRRGNEVVGGLIVAIRIDNLLNTVVQQSRLDGII 230

Query: 301 EYLSHRNHPSLSAYFDEGENLTP-ETVDKC-----PIPFFVYSHGNL------------- 341
            Y    N  + +            E V +      P    +++   +             
Sbjct: 231 LYDQEGNLIATTFSSQARPAPLRQELVSQVKANPDPYGQTLFTIETINGVEYQFAYVPLT 290

Query: 342 FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401
                + ++ T     + +     +S LL     S    I  + L+ + R        L 
Sbjct: 291 IRGGRAGIMATARTREEVLLTWNNISPLLVLITFSLGLGIAVLGLWVARRITRPLE-ELA 349

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
                  N            N+      Q     E +   + + + E       +I+E+ 
Sbjct: 350 ETASAIVNGDLQRRASVNTQNEIGVLARQFNRMTEYLIELLAQVRAEARQRT--AIVESI 407

Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
           +DGI  I+  G I S NRA  +L G   +  L K  +              L  +     
Sbjct: 408 TDGIIFIDVHGEIRSINRATRRLLGLSDDTALPKRLSDL-----------PLEPLTEGIP 456

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAE 579
               ++     T  + ++ L +   +        Y   + D++E                
Sbjct: 457 GFGDQRAQNLYTLGDYIVRLSVEDVREDDGHLLGYVAVLQDLTEEVMV------------ 504

Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639
                K++F+  +SHE+RTPLT I G ++++     GPL +     +   I    N + +
Sbjct: 505 --DRAKTNFIGTISHELRTPLTVIRGNADLLARGLAGPLEDE-QKSFVEAIRLQANNMTN 561

Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA 699
           ++++++ I+ ++SG +    EP+ +   + +AI   Q     K + +       +P++LA
Sbjct: 562 LISNVITIANLDSGSLKSTLEPIEVQRPIEDAIWQTQGQIKAKGLRLEVEIPKKLPKVLA 621

Query: 700 DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKP 759
           D   V+ I L +L NA  +T +G  I +      +  + + V DTG G+     ++  + 
Sbjct: 622 DFDHVRTIMLQLLDNARRYTSAG-TITVRVMPQPD-TLRIEVSDTGRGIPPNLHQQIFER 679

Query: 760 FGQIPN---SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           F +             G GLGL + K +++   G   + S P +G+      
Sbjct: 680 FFRGDGTSEGINSSERGIGLGLAICKQLIERLGGTIGVESAPGQGSTFFFTL 731


>gi|319938401|ref|ZP_08012796.1| hypothetical protein HMPREF9488_03632 [Coprobacillus sp. 29_1]
 gi|319806489|gb|EFW03153.1| hypothetical protein HMPREF9488_03632 [Coprobacillus sp. 29_1]
          Length = 562

 Score =  281 bits (718), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 76/371 (20%), Positives = 164/371 (44%), Gaps = 41/371 (11%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           R + R++++E +++  IL+  ++G  +++    ILS N   + + G        K +  F
Sbjct: 224 RKSMREVKLERIKMDEILKQMNEGFVLLDENYKILSINAKATSILG------NMKTYDQF 277

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
           ++      + + L   +     +              + +  I    L      +L   D
Sbjct: 278 MDYLYYPEIINALENNIPKQEIEI--------KINHNIYACYISRIDL----GTTLLFVD 325

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I+  K+ +                +S+F + VSHE++TP+T+I G+S+++     G + +
Sbjct: 326 ITVAKKAE--------------KMRSEFFSNVSHELKTPMTSIRGYSDLLVQ---GLVHD 368

Query: 621 PRYIEY-ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
                     I    N +  ++ND+L +S+IE+  + +   P+ +   V E +   Q+  
Sbjct: 369 ETQKHMMLEKIQEEVNSMSTLINDILMLSRIENMDIEVEMMPMKMKGLVDEVLESYQVEL 428

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI- 738
           ++  I + T F +     + + + +  +  N++ NAI +    G + ++       + + 
Sbjct: 429 SKHDITMHTDFTD--LTYIGNHQQIYTLLNNLIGNAIKYNIDHGHVFVNV--EDQGQAMK 484

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           + V+DTG+G+   +  +  + F ++   +  +  GTGLGL + K +V    G  ++ S  
Sbjct: 485 VTVKDTGIGIPLADQSRIFERFYRVDKGRSKQRGGTGLGLAIVKHIVSHYKGVIHLTSEL 544

Query: 799 AKGTLIEIIFP 809
            +GT IEII P
Sbjct: 545 GQGTTIEIILP 555


>gi|315644230|ref|ZP_07897400.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus vortex V453]
 gi|315280605|gb|EFU43894.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus vortex V453]
          Length = 460

 Score =  281 bits (718), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 56/251 (22%), Positives = 112/251 (44%), Gaps = 7/251 (2%)

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            D  E  Q  +  S   K   +    + +F++ VSHEI++PL +I GFS+ ++ +R   L
Sbjct: 215 RD--ELGQLADHFSQMAKGIAQLEQMRQEFVSNVSHEIQSPLASIQGFSQTLQTKR---L 269

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
              +   Y + I+     +  +   LL ++ ++  +  L      + E + + +   +  
Sbjct: 270 SEEQQQHYLSIIEAESRRMSQLSKQLLMLASLDKEENILEKSTFDVAEQIKQVLFHTEWS 329

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738
              K + +  S  +    I  D + + Q+  N+++N+I FT   G I +  T   N    
Sbjct: 330 WRSKELTMDMSLPST--YIHGDQQLLHQVWTNLMTNSIKFTAPEGIISLRITGQDNPSCS 387

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           + + DTG+G+    L      F ++  ++      +GLGL + + +V  + G+  + S P
Sbjct: 388 IEISDTGIGIPPEHLPHIFDRFYRVDEARDRSEGSSGLGLAITQKIVQMHGGRIEVTSQP 447

Query: 799 AKGTLIEIIFP 809
            +GT   +  P
Sbjct: 448 GEGTTFTVTLP 458


>gi|197106264|ref|YP_002131641.1| sensory box histidine kinase FixL [Phenylobacterium zucineum HLK1]
 gi|196479684|gb|ACG79212.1| sensory box histidine kinase FixL [Phenylobacterium zucineum HLK1]
          Length = 498

 Score =  281 bits (718), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 84/483 (17%), Positives = 190/483 (39%), Gaps = 26/483 (5%)

Query: 338 HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397
            G       +   L    +++ +     L  L     ++            +    +A  
Sbjct: 18  AGFGVAIGATAACLMLRLALEPVIHDRALFLLFVPALMAAAAVGGFAPALAATVVSLAIH 77

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
           A L       + +  ++ + F            +  +    +T      +E     L SI
Sbjct: 78  AALMGDSLVSDTANLISAVVFALLGLLSGLAGSHLRKM-VAETEHALEDLETREAHLRSI 136

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
           L+   D + +I+  G++ S + A  +LFG+   + + +  +V +        + YL   L
Sbjct: 137 LDTVPDAMIVIDEHGVMQSFSAAAERLFGWTAAESIGRNVSVLMPNPYRDAHDGYLHRYL 196

Query: 518 SLDLRQT--LEKITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKNKLSH 573
           S   R+   + ++ +G  K+     + + + ++       ++  + D++E +  + +L  
Sbjct: 197 STGERRIIGIGRVVVGERKDGSTFPMELSVGEMRVGERRFFTGFVRDLTERQATERRLQD 256

Query: 574 AKKIAEKESS--HKSDFLARVSHEIRTPLTAIIGFSE---VIKNQRFGPLGNPRYIEYAN 628
            +      +      +  + ++HE+  PL+A   + +    + +Q   PL  P+  +  N
Sbjct: 257 LQSELVHVARLTALGEMASALAHELNQPLSAAANYVKGSVRLLDQE--PLDKPKIKDALN 314

Query: 629 YIDRSGNLVLDIVNDLLDI-SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
                      I+  L D  +K E+          SL + + EA +L  + A E+ + + 
Sbjct: 315 LAGEQTLRAGQIIRRLRDFVAKGEA-----ERSLESLPQLLEEAGALAMVGAKERGVRLS 369

Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHFTP--SGGQIIISTTHTSNEEVILRVRDTG 745
              +  +  +LAD   ++Q+ LN++ NAI      +  ++++S     +E V + V DTG
Sbjct: 370 FQISPEVGLVLADKVQIQQVVLNLMRNAIDAMEGSARRELVVSARPVEDEMVEISVADTG 429

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
            G++    +   +PF           EG G+GL +++ +V+A+ G+ ++   P  G +  
Sbjct: 430 PGVSPEVADHLFQPFITTKR------EGMGVGLSISRTIVEAHGGRIWVEPNPKGGAIFR 483

Query: 806 IIF 808
              
Sbjct: 484 FTL 486



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 42/335 (12%), Positives = 87/335 (25%), Gaps = 20/335 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWY--- 144
           ID HG ++  S    +  G  A + IG  +  +    + D  + ++   L          
Sbjct: 147 IDEHGVMQSFSAAAERLFGWTAAESIGRNVSVLMPNPYRDAHDGYLHRYLSTGERRIIGI 206

Query: 145 -GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                    +G+    P++L+   +    R F  F GF      R   + +A  +RL   
Sbjct: 207 GRVVVGERKDGSTF--PMELSVGEMRVGERRF--FTGF-----VRDLTERQATERRLQDL 257

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR-MKNKVSSLTEYYAHKDDVLKTEKYPLL 262
            S L  + +  +  E           P             L +        +K       
Sbjct: 258 QSELVHVARLTALGEMASALAHELNQPLSAAANYVKGSVRLLDQEPLDKPKIKDALNLAG 317

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
                +                ++      Q   +     +       +   F     + 
Sbjct: 318 EQTLRAGQIIRRLRDFVAKGEAERSLESLPQLLEEAGALAMVGAKERGVRLSFQISPEVG 377

Query: 323 PETVDKCPIPFFVYSHGN--LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
               DK  I   V +     +     S        +    +    +S     P +S   A
Sbjct: 378 LVLADKVQIQQVVLNLMRNAIDAMEGSARRELVVSARPVEDEMVEISVADTGPGVSPEVA 437

Query: 381 I---KPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
               +P +  + +   +  S     ++ +      
Sbjct: 438 DHLFQPFITTKREGMGVGLSISRTIVEAHGGRIWV 472



 Score = 46.9 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 17/150 (11%), Positives = 43/150 (28%), Gaps = 6/150 (4%)

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364
                     +  E      +D  P     +  HG +   + +   L  + + + I    
Sbjct: 117 AETEHALEDLETREAHLRSILDTVPDAMIVIDEHGVMQSFSAAAERLFGWTAAESIGRN- 175

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
            +S L+  P    ++      L   +R  I     +   + +                + 
Sbjct: 176 -VSVLMPNPYRDAHDGYLHRYLSTGERRIIGIGRVVVGERKDGSTFPM---ELSVGEMRV 231

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
            E     G   +  + +  +R+++    +L
Sbjct: 232 GERRFFTGFVRDLTERQATERRLQDLQSEL 261


>gi|150396809|ref|YP_001327276.1| integral membrane sensor signal transduction histidine kinase
           [Sinorhizobium medicae WSM419]
 gi|150028324|gb|ABR60441.1| integral membrane sensor signal transduction histidine kinase
           [Sinorhizobium medicae WSM419]
          Length = 511

 Score =  281 bits (718), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 101/249 (40%), Positives = 153/249 (61%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I+E +  K+    A++ AE+ +  KS FLA +SHE+RTPL AI+GFSEV+  +  GPL N
Sbjct: 238 IAELEVAKSMSDEARRRAEEANLAKSRFLASMSHELRTPLNAILGFSEVMSTEVLGPLSN 297

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
           P Y EY   I RSG  +L+++N++LD+S+IE+GK  L  + V+L E V + I +VQL A 
Sbjct: 298 PTYKEYTLDIHRSGEHLLNLINEILDLSRIEAGKYELSEDAVNLAEIVEDCIGMVQLRAR 357

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
            K I I   F   +P + AD ++++Q+ LN+LSNA+ FTPSGG++ +    T+     L 
Sbjct: 358 SKNITIGQQFEQAMPSVWADEKAMRQVTLNLLSNAVKFTPSGGEVSVKVGWTAGGGQYLS 417

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           +RD G G+   E+   +  FGQ   + +   +GTGLGLP+ +A++  + G+F + S    
Sbjct: 418 IRDNGPGIPEEEIPIVLSAFGQGSIAIKSAEQGTGLGLPIVQAILAKHNGQFILRSKLRV 477

Query: 801 GTLIEIIFP 809
           GT    I P
Sbjct: 478 GTEAIAILP 486


>gi|325125675|gb|ADY85005.1| Sensor histidine kinase [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 552

 Score =  281 bits (718), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 79/366 (21%), Positives = 159/366 (43%), Gaps = 40/366 (10%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            ++     +L ++ +A  +G+ +I+ +  IL +N AV  L G    D L       +++N
Sbjct: 215 EQLHHREKELKTVTDAMLEGLILIDLDDQILLSNPAVVSLLGLHDTDPLPDDVKEIIDKN 274

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISE 563
           +       +                    +  + + +              S+ + D+++
Sbjct: 275 SRLAHAEGI------------------VERNGRNIQISASPITSRKILKGTSILVVDVTK 316

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
              E+                + +F A VSHE++TPL +I+G +E+++N     +     
Sbjct: 317 EYHEEQV--------------RREFTANVSHELKTPLQSIMGSAELLENHL---VKEEDR 359

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
             +   I  S   +L +++D++ +S ++  +       ++L   V+EA+  +Q  A+   
Sbjct: 360 DSFYKKIHESSAQLLTLIDDIIRLSHLDENQ-RFEEIKLNLKSPVTEALEALQSSADRHG 418

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
           I + T+ ++    ILA+ R V +IA N++ N+I +    G+  I+       + IL+V D
Sbjct: 419 IKLETNLSDT--MILANFRLVYEIAYNLIDNSIRYNKEKGKTKITVK-EHRGQAILQVAD 475

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TG+G+      +  + F ++  S   +  GTGLGL + K  V    G   + S   KG+ 
Sbjct: 476 TGIGIPQEAQNRIFERFYRVDKSHSRKTGGTGLGLSIVKHAVQQCHGTIRLESELGKGST 535

Query: 804 IEIIFP 809
             +IFP
Sbjct: 536 FTVIFP 541


>gi|226946856|ref|YP_002801929.1| phosphate regulon histidine protein kinase PhoR [Azotobacter
           vinelandii DJ]
 gi|226721783|gb|ACO80954.1| phosphate regulon histidine protein kinase; PhoR [Azotobacter
           vinelandii DJ]
          Length = 440

 Score =  281 bits (718), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 80/373 (21%), Positives = 157/373 (42%), Gaps = 36/373 (9%)

Query: 444 KRKMEIEVMQLCSILE-------ATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
           +R+ +    +L ++++       A  D + +++ EG +   NRA   L G        +P
Sbjct: 83  QRRDQRVRGRLQAVIDRVQESTAALKDAVIMLDAEGNLEWWNRAAETLLGLKTPQDSGQP 142

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556
            T  +                SL+L   L               L++ I +        +
Sbjct: 143 ITNLVRHPQFKTYMDQSNFSASLELPSPLNDRLY----------LQVQITRYGNGE-QLM 191

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            + D++  +Q +                + DF+A VSHE+RTPLT I G+ E +      
Sbjct: 192 LVRDVTHVRQLE--------------QMRKDFVANVSHELRTPLTVIAGYLEPMLEHADE 237

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
              NPR+      + +    + ++++DLL ++++E+       +PV ++  +   +   Q
Sbjct: 238 V--NPRWRRPLQQMQQQAERMKNLLDDLLLLARLEANDNQQLRQPVEVEPLLQAIVKDAQ 295

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
           + +      I      ++  +  +   +     N++ NA+ +TP GG+I +    +  + 
Sbjct: 296 ILSGADEHRILLDAEPDL-ALKGNEAELSSAFSNLVYNAVKYTPPGGEIRLRW-WSDRDG 353

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
             L V+DTG+G+ +  L +  + F ++  S+     GTGLGL + K  +  + G+  I S
Sbjct: 354 AHLSVQDTGIGIESRHLTRLTERFYRVDASRSASTGGTGLGLAIVKHALIHHNGRLEIAS 413

Query: 797 TPAKGTLIEIIFP 809
            P KG+L    FP
Sbjct: 414 EPGKGSLFTCHFP 426


>gi|152971650|ref|YP_001336759.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238896247|ref|YP_002920983.1| hybrid sensory histidine kinase BarA [Klebsiella pneumoniae
           NTUH-K2044]
 gi|150956499|gb|ABR78529.1| hybrid sensory histidine kinase in two-component regulatory system
           with UvrY [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|238548565|dbj|BAH64916.1| hybrid sensory histidine kinase in two-component regulatory system
           with UvrY [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 916

 Score =  281 bits (718), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 84/333 (25%), Positives = 150/333 (45%), Gaps = 17/333 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +FG+ +   +  P    +               L   +   +             +++ +
Sbjct: 193 IFGWRLMRDVTGPIRNMVNTVDR-----IRRGQLDSRVEGFMLGELDMLKNGINSMAMSL 247

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 248 AAYHEEMQHNVDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTP 307

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+ +          N    ++   I+RS N +L I+ND+LD SK+E+GK+ L  
Sbjct: 308 LNGVIGFTRLTLKTDL----NATQRDHLTTIERSANNLLAIINDVLDFSKLEAGKLILES 363

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P  L  ++ E ++L+   A++K + +  +  NN+P  ++ D   ++QI  N++ NAI F
Sbjct: 364 IPFLLRTSLDEVVTLLAHSAHDKGLELTLNIKNNVPDNVIGDPLRLQQIVTNLVGNAIKF 423

Query: 719 TPSGGQ-IIISTTHTSNEEVILRVR--DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T  G   +++     SN  V + ++  DTG+G+   +  +  + F Q   S   R  GTG
Sbjct: 424 TEHGNIDVLVEQRAISNSRVQIEIQIHDTGIGIPERDQSRLFQAFRQADASISRRHGGTG 483

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           LGL + + +V    G     S P +G+      
Sbjct: 484 LGLVITQRLVKEMGGDISFHSQPNRGSTFWFHI 516


>gi|144900463|emb|CAM77327.1| Sensor histidine kinase [Magnetospirillum gryphiswaldense MSR-1]
          Length = 796

 Score =  281 bits (718), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 98/651 (15%), Positives = 207/651 (31%), Gaps = 63/651 (9%)

Query: 185 HVNRVDNDPRALGKRLDKKFSH-LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL 243
              R       L   LD +    L     G              Q   P    K++ S+ 
Sbjct: 56  QDRRAAMHAHTLAAALDSETRACLVVAADGTELHRNPLARRLLGQVTDPLAPFKDRASAD 115

Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303
                  D +        +   E SLP       ++  +                 +   
Sbjct: 116 DRVLDDLDRLAAAAMVGAVRKAEFSLPT------LDGGREWFTVEIRPA-GPGAVIWLVE 168

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEI 362
                 ++            + +D  P+      S G +  AN            + I  
Sbjct: 169 DVSPRRAIEETLRRENEWLADFIDFLPVGVYCADSDGIIRTANHRLAEWLGGTPSELIGH 228

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
              L  +L      +   +  + L                             +     +
Sbjct: 229 --SLEDVLGQTPDPEAERV-ELRLMGRGGEVF------------------QAMLAHSVFD 267

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
           +  E   ++ +  + V     +R +     +   + +    GIA+I  +G I + N A+ 
Sbjct: 268 EGGEIRTRSVVVRDMVPEHQWERALRTAERRFRWLFDDAPVGIALIEPDGSIGACNLALQ 327

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
            + G   + ++ +    ++           L  +LS  L            + + +  L 
Sbjct: 328 AMMGIDHDGMIGRRLADYIAAEQQDSAAEQLARVLSGSLPGA-HLDVRLKGRRDLIAQLF 386

Query: 543 IIIKKLPFS-SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
           +       + S   +   D +E +  + + + ++K+              V+H+    LT
Sbjct: 387 VSPTHEDGAISGLIVHFIDATEQRNLEVQFAQSQKM-----QAMGQLAGGVAHDFNNLLT 441

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           A+IGF +++  +     G+P + +    + ++ N    +V  LL  S+ ++    L    
Sbjct: 442 AMIGFCDLLLQRHGA--GDPSFADIMQ-VRQNANRAASLVRQLLAFSRRQA----LQPRL 494

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           +++ +A++E  +L++     + I ++      +  +  D     Q+ +N+  NA    P 
Sbjct: 495 LNVTDALAELSTLLR-RLLGETIDLKLVHGRQLGLVRVDPGQFDQVIINLAVNARDAMPG 553

Query: 722 GGQIIISTT--------------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
           GG + I T                 + + V++ V D+G G+    L +  +PF     S 
Sbjct: 554 GGMLTIRTNAVTVDQPVQRGPELMPAGQYVLIEVTDSGTGIARENLGRIFEPFF----ST 609

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
           +  G GTGLGL     +V    G   + S   +G    I  P ++     +
Sbjct: 610 KEVGAGTGLGLSTVYGIVRQTDGFIVVDSEIGQGATFAIYLPRFEADPAQE 660



 Score = 55.4 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/306 (10%), Positives = 79/306 (25%), Gaps = 25/306 (8%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            +  D+ G ++  +  L + +G    ++IG  L DV      DP                
Sbjct: 198 VYCADSDGIIRTANHRLAEWLGGTPSELIGHSLEDVLGQ-TPDPEA-------------- 242

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +     + G    V   + A  ++    E        +V     ++      +  +++F 
Sbjct: 243 ERVELRLMGRGGEVFQAMLAHSVFDEGGEIRTRS--VVVRDMVPEHQWERALRTAERRFR 300

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV--SSLTEYYAHKDDVLKTEKYPLLT 263
            L +      ++ +    I +       +   +               +   +    L  
Sbjct: 301 WLFDDAPVGIALIEPDGSIGACNLALQAMMGIDHDGMIGRRLADYIAAEQQDSAAEQLAR 360

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
               SLP       +   +    Q F +  +        + H    +     +     + 
Sbjct: 361 VLSGSLPGAHLDVRLKGRRDLIAQLFVSPTHEDGAISGLIVHFIDATEQRNLEVQFAQSQ 420

Query: 324 ETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
           +      +       G     N     +  +  +  ++  G              NA + 
Sbjct: 421 KMQAMGQLA-----GGVAHDFNNLLTAMIGFCDL-LLQRHGAGDPSFADIMQVRQNANRA 474

Query: 384 VMLYRS 389
             L R 
Sbjct: 475 ASLVRQ 480



 Score = 45.8 bits (107), Expect = 0.030,   Method: Composition-based stats.
 Identities = 30/368 (8%), Positives = 90/368 (24%), Gaps = 32/368 (8%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150
           A G     +    + +G     +   +    +D   +D  + +            + +L 
Sbjct: 83  ADGTELHRNPLARRLLGQVTDPLAPFKDRASADDRVLDDLDRLAAAAMVGAVRKAEFSLP 142

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
            ++G   +  +++             G   + +  V+        L +  +     +  +
Sbjct: 143 TLDGGREWFTVEIRPA--------GPGAVIWLVEDVSPRRAIEETLRRENEWLADFIDFL 194

Query: 211 KKGHSSVEKEK-YDIFSQQSPPPHLRMKNKVSSLTEYYA---HKDDVLKTEKYPLLTSEE 266
             G    + +      + +         +++   +         D   +  +  L+    
Sbjct: 195 PVGVYCADSDGIIRTANHRLAEWLGGTPSELIGHSLEDVLGQTPDPEAERVELRLMGRGG 254

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
                        +  ++     G ++  S    + +               E       
Sbjct: 255 EVFQ--------AMLAHSVFDEGGEIRTRSVVVRDMVPEHQWER---ALRTAERRFRWLF 303

Query: 327 DKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
           D  P+    +   G++   N +   +        I+  G +   L     ++        
Sbjct: 304 DDAPVGIALIEPDGSIGACNLALQAMMG------IDHDGMIGRRLADYIAAEQQDSAAEQ 357

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
           L R     +   A L  ++      L               +              +  +
Sbjct: 358 LARVLSGSLPG-AHL-DVRLKGRRDLIAQLFVSPTHEDGAISGLIVHFIDATEQRNLEVQ 415

Query: 446 KMEIEVMQ 453
             + + MQ
Sbjct: 416 FAQSQKMQ 423



 Score = 43.9 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/191 (10%), Positives = 50/191 (26%), Gaps = 5/191 (2%)

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
           RSDR        L            +   P         +          V   +  R+ 
Sbjct: 2   RSDRRVSPLPWTLGAAVAALAGMAVLEAGPL-VPAMAAASAVALITTAALVRRWMQDRRA 60

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
            +    L + L++ +    ++  +G  L  N    +L G   + +         +     
Sbjct: 61  AMHAHTLAAALDSETRACLVVAADGTELHRNPLARRLLGQVTDPLAPFKDRASADDRVLD 120

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQE 567
            ++      +   +R+  E          +  ++ I              + D+S  +  
Sbjct: 121 DLDRLAAAAMVGAVRKA-EFSLPTLDGGREWFTVEIRPA---GPGAVIWLVEDVSPRRAI 176

Query: 568 KNKLSHAKKIA 578
           +  L    +  
Sbjct: 177 EETLRRENEWL 187


>gi|330012191|ref|ZP_08307324.1| signal transduction histidine-protein kinase BarA [Klebsiella sp.
           MS 92-3]
 gi|328533893|gb|EGF60561.1| signal transduction histidine-protein kinase BarA [Klebsiella sp.
           MS 92-3]
          Length = 916

 Score =  281 bits (718), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 84/333 (25%), Positives = 150/333 (45%), Gaps = 17/333 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +FG+ +   +  P    +               L   +   +             +++ +
Sbjct: 193 IFGWRLMRDVTGPIRNMVNTVDR-----IRRGQLDSRVEGFMLGELDMLKNGINSMAMSL 247

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 248 AAYHEEMQHNVDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTP 307

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+ +          N    ++   I+RS N +L I+ND+LD SK+E+GK+ L  
Sbjct: 308 LNGVIGFTRLTLKTDL----NATQRDHLTTIERSANNLLAIINDVLDFSKLEAGKLILES 363

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P  L  ++ E ++L+   A++K + +  +  NN+P  ++ D   ++QI  N++ NAI F
Sbjct: 364 IPFLLRTSLDEVVTLLAHSAHDKGLELTLNIKNNVPDNVIGDPLRLQQIVTNLVGNAIKF 423

Query: 719 TPSGGQ-IIISTTHTSNEEVILRVR--DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T  G   +++     SN  V + ++  DTG+G+   +  +  + F Q   S   R  GTG
Sbjct: 424 TEHGNIDVLVEQRAISNSRVQIEIQIHDTGIGIPERDQSRLFQAFRQADASISRRHGGTG 483

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           LGL + + +V    G     S P +G+      
Sbjct: 484 LGLVITQRLVKEMGGDISFHSQPNRGSTFWFHI 516


>gi|288933810|ref|YP_003437869.1| multi-sensor hybrid histidine kinase [Klebsiella variicola At-22]
 gi|288888539|gb|ADC56857.1| multi-sensor hybrid histidine kinase [Klebsiella variicola At-22]
          Length = 916

 Score =  281 bits (718), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 84/333 (25%), Positives = 150/333 (45%), Gaps = 17/333 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +FG+ +   +  P    +               L   +   +             +++ +
Sbjct: 193 IFGWRLMRDVTGPIRNMVNTVDR-----IRRGQLDSRVEGFMLGELDMLKNGINSMAMSL 247

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 248 AAYHEEMQHNVDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTP 307

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+ +          N    ++   I+RS N +L I+ND+LD SK+E+GK+ L  
Sbjct: 308 LNGVIGFTRLTLKTDL----NATQRDHLTTIERSANNLLAIINDVLDFSKLEAGKLILES 363

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P  L  ++ E ++L+   A++K + +  +  NN+P  ++ D   ++QI  N++ NAI F
Sbjct: 364 IPFLLRTSLDEVVTLLAHSAHDKGLELTLNIKNNVPDNVIGDPLRLQQIVTNLVGNAIKF 423

Query: 719 TPSGGQ-IIISTTHTSNEEVILRVR--DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T  G   +++     SN  V + ++  DTG+G+   +  +  + F Q   S   R  GTG
Sbjct: 424 TEHGNIDVLVEQRAISNSRVQIEIQIHDTGIGIPERDQSRLFQAFRQADASISRRHGGTG 483

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           LGL + + +V    G     S P +G+      
Sbjct: 484 LGLVITQRLVKEMGGDISFHSQPNRGSTFWFHI 516


>gi|116626238|ref|YP_828394.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116229400|gb|ABJ88109.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 760

 Score =  281 bits (718), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 98/633 (15%), Positives = 206/633 (32%), Gaps = 54/633 (8%)

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMK----NKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
           + +G   V+ E   IFS Q     L +      + S  T  Y    D  ++     L   
Sbjct: 15  VPEGIWVVDPEGRTIFSNQRMAEILGVAFESMPQQSCFTCVYPEDADSARSNFARALAG- 73

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA----YFDEGENL 321
               P        + +          + N+    F  L   +  +            E  
Sbjct: 74  -DRRPFDFRLQRADGSPVWVSITCMPMNNDDGVPFGLLGMFSEITERKLAVDALRASEER 132

Query: 322 TPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
             E ++   +          L   N  F  +  Y   + +       +L +     D   
Sbjct: 133 LWEIINVASVGVAQTDLTARLEMVNDRFCAIFGYAREELLGK-----SLRELSHPDDLLN 187

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
           I                     I+ +    +          +   +      +  E  + 
Sbjct: 188 IVEQTRRLLSGEIPYLCVDKRHIRKDGA-IIWSRVHKSCIRDLAGQPTHTIVVLEEITEA 246

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
            + +  ++    +  ++ ++    I++ +     +  +  +    G   E +    F   
Sbjct: 247 VLAQAALKESEERFRAMADSAPVLISLWDTGLNPIFCSSHLLAFAGRTEEQLRTGGFEDL 306

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLT 557
           +  +    ++  +   +    +   E        + +  S+         +     Y + 
Sbjct: 307 VHPDDLERVDAAVRAAVQ--RQGAFEIEVRMRRADGEYRSMLTNGTPRFAAGTYAGYVMI 364

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
             DI+E+K+++  L   +K+            A ++H+    L  I+  +E+I     G 
Sbjct: 365 TVDITEFKRKQEYLMAMQKL-----ESLGVLAAGIAHDFNNLLGGILASAELI--SAGGE 417

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
            G P   E    I  +     +IV  L+       G+ +  F  V + + V+E + L+++
Sbjct: 418 QGAPLDEESLLRIRTAAIRGGEIVRQLMAY----GGEESQAFSSVEIPQLVNEMLELLKI 473

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS-GGQIIISTTH----- 731
               KR ++   F   +P + A+   ++Q+ LN++ NA        G I I+        
Sbjct: 474 SI-SKRAVLNVDFPAGLPSVRANTAQLRQVVLNLIVNASEALEDTQGVIAITAARVSGDD 532

Query: 732 ------TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
                  S + V L V D+G GMT     +   PF         +  G GLGL   + ++
Sbjct: 533 YQPAVLASQDYVSLTVSDSGCGMTEEVQARIFDPFFT------SKFAGRGLGLASVQGII 586

Query: 786 DANMGKFYIFSTPAKGTLIEIIFPLY--DTSHP 816
            ++ G  ++ S P +G+  E++ P+     S P
Sbjct: 587 RSHGGAIHVTSAPGRGSRFEVLLPVASEPVSEP 619



 Score =  108 bits (271), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 33/266 (12%), Positives = 83/266 (31%), Gaps = 14/266 (5%)

Query: 321 LTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
           +    V   P   +V    G   ++N     +    + + +      + +   P+ +D+ 
Sbjct: 7   MYRRVVMAVPEGIWVVDPEGRTIFSNQRMAEILGV-AFESMPQQSCFTCVY--PEDADSA 63

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
                     DR           +Q    + + ++       N         G+  E  +
Sbjct: 64  RSNFARALAGDRRPFDF-----RLQRADGSPVWVSITCMPMNNDDGVPFGLLGMFSEITE 118

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
            ++    +     +L  I+   S G+A  +    +   N     +FGY  E++L K    
Sbjct: 119 RKLAVDALRASEERLWEIINVASVGVAQTDLTARLEMVNDRFCAIFGYAREELLGKSLRE 178

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----S 555
               +    +      +LS ++   L        K+  ++  R+    +   +       
Sbjct: 179 LSHPDDLLNIVEQTRRLLSGEIP-YLCVDKRHIRKDGAIIWSRVHKSCIRDLAGQPTHTI 237

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKE 581
           + + +I+E    +  L  +++     
Sbjct: 238 VVLEEITEAVLAQAALKESEERFRAM 263



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 37/386 (9%), Positives = 104/386 (26%), Gaps = 31/386 (8%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTWY 144
            W +D  G     ++ + + +G     M              D         L      +
Sbjct: 19  IWVVDPEGRTIFSNQRMAEILGVAFESMPQQSCFTCVYPEDADSARSNFARALAGDRRPF 78

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
                   +G+   V + +  +P+ + +    G  G  +              +  +++ 
Sbjct: 79  DFRLQ-RADGSP--VWVSITCMPMNNDDGVPFGLLG--MFSEITERKLAVDALRASEERL 133

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQS---PPPHLRMKNKVSSLTEYYAHKDDVLKTEKY-- 259
             +  +     +       +               +  +       +H DD+L   +   
Sbjct: 134 WEIINVASVGVAQTDLTARLEMVNDRFCAIFGYAREELLGKSLRELSHPDDLLNIVEQTR 193

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS----AYF 315
            LL+ E   L   +     +      + +   +++ + +    +      + +    A  
Sbjct: 194 RLLSGEIPYLCVDKRHIRKDGAIIWSRVHKSCIRDLAGQPTHTIVVLEEITEAVLAQAAL 253

Query: 316 DEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLL----TKYKSVDDIEIAGGLSTLLD 371
            E E       D  P+   ++  G     NP F          ++ + +   G      +
Sbjct: 254 KESEERFRAMADSAPVLISLWDTG----LNPIFCSSHLLAFAGRTEEQLRTGG-----FE 304

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
                D+       +  + +   A    +   + + E    +T                 
Sbjct: 305 DLVHPDDLERVDAAVRAAVQRQGAFEIEVRMRRADGEYRSMLTNG--TPRFAAGTYAGYV 362

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSI 457
            I  +  + +  +  + + + +L S+
Sbjct: 363 MITVDITEFKRKQEYL-MAMQKLESL 387



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 29/204 (14%), Positives = 68/204 (33%), Gaps = 28/204 (13%)

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
                ++ A  +GI +++ EG  + +N+ ++++ G   E + ++     +          
Sbjct: 6   EMYRRVVMAVPEGIWVVDPEGRTIFSNQRMAEILGVAFESMPQQSCFTCVYPEDADSARS 65

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQE 567
                L+ D R            +   + + I    +               +I+E K  
Sbjct: 66  NFARALAGDRRP---FDFRLQRADGSPVWVSITCMPMNNDDGVPFGLLGMFSEITERKLA 122

Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT-----------AIIGFS-EVIKNQRF 615
            + L  +++   +  +  S  +A      +T LT           AI G++ E +  +  
Sbjct: 123 VDALRASEERLWEIINVASVGVA------QTDLTARLEMVNDRFCAIFGYAREELLGKSL 176

Query: 616 GPLGNPRYIEYANYIDRSGNLVLD 639
             L +P   +    I      +L 
Sbjct: 177 RELSHP---DDLLNIVEQTRRLLS 197



 Score = 77.4 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 32/383 (8%), Positives = 96/383 (25%), Gaps = 37/383 (9%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
             D    L+ +++      G    +++G  L ++S    +     +  + + +    G+ 
Sbjct: 146 QTDLTARLEMVNDRFCAIFGYAREELLGKSLRELSHPDDL-----LNIVEQTRRLLSGEI 200

Query: 148 TLWPIEGTNLY-----VPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
               ++  ++      +   +    I     + +      ++         +A  K  ++
Sbjct: 201 PYLCVDKRHIRKDGAIIWSRVHKSCIRDLAGQPTHT--IVVLEEITEAVLAQAALKESEE 258

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSP--PPHLRMKNKV--SSLTEYYAHKDDVLKTEK 258
           +F  + +      S+     +     S       R + ++      +     D       
Sbjct: 259 RFRAMADSAPVLISLWDTGLNPIFCSSHLLAFAGRTEEQLRTGGFEDLVHPDDLERVDAA 318

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
                  + +   +      +    +     GT +  +     Y+      +      E 
Sbjct: 319 VRAAVQRQGAFEIEVRMRRADGEYRS-MLTNGTPRFAAGTYAGYVMITVDITEFKRKQEY 377

Query: 319 ENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
                +          V + G     N            + +      + L+ A      
Sbjct: 378 LMAMQKL-----ESLGVLAAGIAHDFN------------NLLGGILASAELISAGGEQGA 420

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
              +  +L                + +  E S A + +   +       + +  I    V
Sbjct: 421 PLDEESLLRIRTAAIRGGEIVRQLMAYGGEESQAFSSVEIPQLVNEMLELLKISISKRAV 480

Query: 439 DTRINKRKM---EIEVMQLCSIL 458
                   +        QL  ++
Sbjct: 481 LNVDFPAGLPSVRANTAQLRQVV 503


>gi|325292721|ref|YP_004278585.1| sensory box histidine kinase/response regulator [Agrobacterium sp.
           H13-3]
 gi|325060574|gb|ADY64265.1| sensory box histidine kinase/response regulator [Agrobacterium sp.
           H13-3]
          Length = 862

 Score =  281 bits (718), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 103/647 (15%), Positives = 204/647 (31%), Gaps = 51/647 (7%)

Query: 190 DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH 249
            +D  A           L    KGH       Y   S  +    ++    + S +     
Sbjct: 83  QSDGLARRFLSAHPDGTLITDAKGHMVYANATYCRMSGTTKASDIQSLETLLSRSRESTE 142

Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
               L           E     +      +   +  +     L++   E+       +  
Sbjct: 143 ALYRLINVLREGRDGYEEFRLLKPLGEATSGGPHWYRLKGRVLKDAGGEALHVFQIADIT 202

Query: 310 SLSAYFDEGENLTPET---VDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365
                 +            +D  P  FF     G + Y N +               +  
Sbjct: 203 PEREDQERFFRELQNAIDYLDHAPAGFFSAGRKGEIVYLNATLSEWLGIDLAQFSPGSMT 262

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
           +S ++    ++   ++ P    +     +    R    + N ++  A         +  P
Sbjct: 263 VSDIVAGEGMALIESVHPQGSAKRT-EILDLDMR----RVNGQSMPARLVHQVTSKDGAP 317

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
                  +       +  +       M+       T   IA ++ EG IL  N    KLF
Sbjct: 318 GESRTIVLMR----PKGQEDTESSSAMRFTRFFNNTPMAIASLDGEGRILRINAPFLKLF 373

Query: 486 -GYPVEDILRK--PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
            G    D + +       +  N    +   L E             +   + E +     
Sbjct: 374 SGVVGRDDIDRGVALEAIIHDNEKPRLEQALAEA-KDRQGDIAPFDSRHPSDEGRHFRFY 432

Query: 543 IIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
           +                +   +++E K  + +++  +K+     +        ++H+   
Sbjct: 433 VNAVIDQDDEAPEEVAIVYAIEVTEQKALETQMAQTQKM-----NAVGTLAGGIAHDFNN 487

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
            LTAI+  S+ +  Q      +P + +    I R+ N    +V  LL  S+    K  + 
Sbjct: 488 VLTAILLSSDHLLLQARPA--DPSFADLME-IKRNANRAAVLVRQLLAFSR----KQTMR 540

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718
              ++L + + +   LV    +   + +   +  ++  +  DL   +Q+ +N+  NA   
Sbjct: 541 PAILNLTDVIGDLRMLVDRLISGTNVKLEVDYGRDLWPVKTDLSQFEQVLINLCVNARDA 600

Query: 719 TPSGGQIIISTTHTSNEE--------------VILRVRDTGVGMTNYELEKAMKPFGQIP 764
            P GG+I I T +   +E              V++ V D G G+    ++K  +PF    
Sbjct: 601 MPDGGKITIRTRNVDADEAAALGRPEVPAEDMVMVEVADNGTGIPPEIMDKIFEPFFTTK 660

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
           +     G+GTGLGL +   +V  + G  Y  S   KGT   I  P +
Sbjct: 661 D----VGKGTGLGLSMVYGIVKQSGGYIYPESEVGKGTAFRIYLPRH 703



 Score = 68.1 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 40/383 (10%), Positives = 90/383 (23%), Gaps = 24/383 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN---NHIGDLLKRQNTWYG 145
            DA G++   +    +  G      I   L  +              I  L + ++ +  
Sbjct: 102 TDAKGHMVYANATYCRMSGTTKASDI-QSLETLLSRSRESTEALYRLINVLREGRDGYEE 160

Query: 146 KTTLWPIEG--TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
              L P+    +       L    +     E      F I  +     D     + L   
Sbjct: 161 FRLLKPLGEATSGGPHWYRLKGRVLKDAGGEALHV--FQIADITPEREDQERFFRELQNA 218

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
             +L     G  S  ++   ++   +    L +   ++  +       D++  E   L+ 
Sbjct: 219 IDYLDHAPAGFFSAGRKGEIVYLNATLSEWLGID--LAQFSPGSMTVSDIVAGEGMALIE 276

Query: 264 SEESSLPE------QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
           S               D   +N      +        +             P      + 
Sbjct: 277 SVHPQGSAKRTEILDLDMRRVNGQSMPARLVHQVTSKDGAPGESRTIVLMRPKGQEDTES 336

Query: 318 GEN-LTPETVDKCPIPFFVYSH-GNLFYANPSFLLLT-KYKSVDDIEIAGGLSTLLDAPK 374
                     +  P+        G +   N  FL L       DDI+    L  ++   +
Sbjct: 337 SSAMRFTRFFNNTPMAIASLDGEGRILRINAPFLKLFSGVVGRDDIDRGVALEAIIHDNE 396

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
                                  +R      +               +            
Sbjct: 397 KPRLE-QALAEAKDRQGDIAPFDSRH---PSDEGRHFRFYVNAVIDQDDEAPEEVAIVYA 452

Query: 435 PEDVDTRINKRKMEIEVMQLCSI 457
            E  + +  + +M  +  ++ ++
Sbjct: 453 IEVTEQKALETQM-AQTQKMNAV 474


>gi|300087186|ref|YP_003757708.1| PAS/PAC sensor hybrid histidine kinase [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299526919|gb|ADJ25387.1| PAS/PAC sensor hybrid histidine kinase [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 648

 Score =  281 bits (718), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 91/522 (17%), Positives = 183/522 (35%), Gaps = 35/522 (6%)

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH--GNLFYANPSFLLLTKYKSVDDIE 361
             +N           E       +  P    V     GN+   NP       Y   + I 
Sbjct: 8   DEQNPQLPPEDLPAKEFHYRRLFETAPDGILVIDTETGNIIDVNPVLTDKFGYPRQEIIN 67

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                   L       N   +        +T       L    +  +    +       +
Sbjct: 68  KPIWELGFLKKVFSDRNKLDELA------QTDYMFIEDLSLETFTGKE---LKVDLVGNS 118

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
            +             + +    + +++    +L +++E    GIA ++++G  +  N   
Sbjct: 119 YEVEHQKLIQLRLQLNRERTEAELRLDESRQRLNNLIEMAPIGIA-LSQQGNTIYANTRY 177

Query: 482 SKLFGYPV-EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
            K+FGY   E+++   F   +   +      ++T      ++   +    G  K+     
Sbjct: 178 LKMFGYENLEELVGTSFLNQIAPQSRVEAVEFVTR-QEQGVKADTDHEFQGIRKDGSQFP 236

Query: 541 LRIIIKKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEKESS--HKSDFLARVSHEI 596
            +  + ++   +         D+++ KQ + +    +  AE  S      +  A ++HEI
Sbjct: 237 FQTSVDRVELENGDALIGYFIDVTKRKQVELENHVLRDKAEMSSRLAAVGEMAAGIAHEI 296

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
             PLT +IGFSE++  ++  P       E    I+     V +IV  +L  ++    +  
Sbjct: 297 NNPLTGVIGFSELLLERKDLP---DDMKEELTIINAGSQRVKEIVKRMLTFAR----QHE 349

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN-- 714
           L     S+ E +   + +         I +   +  ++P + AD   ++Q+ LNI+ N  
Sbjct: 350 LVQSSASIAELLDNTLEMRAYVLRTSNIEVVREYDPDLPWMTADAGQLQQVFLNIIVNAE 409

Query: 715 -AIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
            A+      G++ + T       V + + D G G+      +  +PF          GEG
Sbjct: 410 YAMKKVHGRGRLTVGTERVDE-RVRVTIEDDGGGIPTDARSRLFQPFFTTKEP----GEG 464

Query: 774 TGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFPLYDTS 814
           TGLGL L++ +V  + G     +  P  G    I  P+   +
Sbjct: 465 TGLGLSLSRGIVAEHGGTID-ENGLPGVGARFIIDLPIITAT 505



 Score = 41.6 bits (96), Expect = 0.51,   Method: Composition-based stats.
 Identities = 30/361 (8%), Positives = 107/361 (29%), Gaps = 24/361 (6%)

Query: 89  IDAH-GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
           ID   G + +++  L    G    ++I   + ++  +  +  + +  D L + +  + + 
Sbjct: 40  IDTETGNIIDVNPVLTDKFGYPRQEIINKPIWELGFLKKVFSDRNKLDELAQTDYMFIED 99

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                  T   + +DL        +++    R    + +NR   +         ++ ++L
Sbjct: 100 LSLETF-TGKELKVDLVGNSYEVEHQKLIQLR----LQLNRERTEAELRLDESRQRLNNL 154

Query: 208 HEIKKGHSSVEKEKYDIFSQQS---PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
            E+     ++ ++   I++         +  ++  V +           ++  ++     
Sbjct: 155 IEMAPIGIALSQQGNTIYANTRYLKMFGYENLEELVGTSFLNQIAPQSRVEAVEFVTRQE 214

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
           +        +F  I  +           +   +     + +    +     +   ++  +
Sbjct: 215 QGVKADTDHEFQGIRKDGSQFPFQTSVDRVELENGDALIGYFIDVTKRKQVELENHVLRD 274

Query: 325 TVDKCP--IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
             +           + G     N            + +    G S LL   K   ++  +
Sbjct: 275 KAEMSSRLAAVGEMAAGIAHEIN------------NPLTGVIGFSELLLERKDLPDDMKE 322

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
            + +  +  +          + + R++ L  +     +       M    +   +++   
Sbjct: 323 ELTIINA-GSQRVKEIVKRMLTFARQHELVQSSASIAELLDNTLEMRAYVLRTSNIEVVR 381

Query: 443 N 443
            
Sbjct: 382 E 382


>gi|167629750|ref|YP_001680249.1| two-component sensor histidine kinase [Heliobacterium modesticaldum
           Ice1]
 gi|167592490|gb|ABZ84238.1| two-component sensor histidine kinase [Heliobacterium modesticaldum
           Ice1]
          Length = 598

 Score =  281 bits (718), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 76/368 (20%), Positives = 163/368 (44%), Gaps = 28/368 (7%)

Query: 456 SILEATSDGI-AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ-----NTPSVM 509
           +++ A+ DGI    ++ G  +  N +  +LFG   E +      +F          P  +
Sbjct: 245 ALMNASKDGIAFYTSKHGEWV-CNASFGELFGIDEEVLHFDDTDLFYRAIQDKLEEPEKV 303

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKE-EKLLSLRIIIKKL-PFSSCYSLTMHDISEWKQE 567
              L + L  D+ + L    +    E  + + L +   ++      + L   D++  K+ 
Sbjct: 304 AAILQQDLQRDVVERLGPWRVSVLSEPARSVDLYLNPVEVKREVLGWLLIFRDVT--KET 361

Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
           +                +S++ +  +HEIRTPL +I G+ ++        +       Y 
Sbjct: 362 EFH------------RLRSEYFSAATHEIRTPLASIDGYIDMALE---PGVAAEEQRHYL 406

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
           N    + + +  +V+++LD+ K+++      F+ ++++  ++       + A +K +  R
Sbjct: 407 NQAKANLSRLHQLVSNILDLEKLQASLPGHRFQLLAVETLLTPIADNYAILAAKKGLQFR 466

Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747
              A  +P +  D   + Q   N+LSNA+ +T +G    I  +   + ++ + V DTG+G
Sbjct: 467 CDIAPGLPLLYGDEIRLGQALSNLLSNAVKYTLAGSC-GIQASLKED-KIRIDVWDTGIG 524

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           ++  E+    + F +  N    +  GTGLGL + K +++++ G+  + S   +GT   I+
Sbjct: 525 LSELEMRHLFERFYRAENEVTRKTTGTGLGLSIVKTIIESHGGEIAVSSHLGRGTTFTIL 584

Query: 808 FPLYDTSH 815
            P+ D S 
Sbjct: 585 LPIVDVSQ 592


>gi|189424607|ref|YP_001951784.1| Hpt sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189420866|gb|ACD95264.1| Hpt sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 929

 Score =  281 bits (718), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 70/251 (27%), Positives = 127/251 (50%), Gaps = 9/251 (3%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  Q   ++  AK+ AE  S  KS+FLA +SHEIRTP+  I+G +E++ +       NP+
Sbjct: 260 QLMQSGEEMRIAKEQAEASSRAKSEFLANMSHEIRTPMNGILGMTELLMDTEL----NPQ 315

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             +Y   +  S   ++DI+ND+LD SKIE G++     P  L   + + +  + + A +K
Sbjct: 316 QFDYLRSVKVSAENLMDIINDILDFSKIEVGRLETEAIPFMLRSMLGQTLRTLSVRAAQK 375

Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEE---V 737
            + +      ++P  ++ D   ++Q+ LN+  NA+ FT  G  ++++S       +   +
Sbjct: 376 GLELVFQVDPDLPDTLIGDPGRLRQVLLNLAGNAVKFTDQGEVELLVSKQQELPGKELLL 435

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
              VRD G+G++    ++   PF Q   S   +  GTGLGL ++  +V    G+  + S 
Sbjct: 436 RFEVRDRGIGISPEHQQRIFAPFEQADLSTTKKYGGTGLGLAISSRLVQLMGGEIGLESV 495

Query: 798 PAKGTLIEIIF 808
             +G+      
Sbjct: 496 AGQGSTFWFTL 506


>gi|186686479|ref|YP_001869675.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186468931|gb|ACC84732.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 761

 Score =  281 bits (718), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 106/598 (17%), Positives = 214/598 (35%), Gaps = 65/598 (10%)

Query: 275 FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP--SLSAYFDEGENLTPETVDKCPIP 332
             +    +Y++++         + + E +   +    +     ++      E  D  P  
Sbjct: 21  LQSTASERYSQQELTTEAFAELQIALEEMKIASEELQATRIAVEKERQRYQELFDFAPDG 80

Query: 333 FFVYSH-GNLFYANPSFLLLTKYKSVDDIEIA----------GGLSTLLDAPKLSDNNAI 381
           + V    G +  AN +  +L        I                   L   +  D    
Sbjct: 81  YLVTDTYGTILEANQATTILLNISQRFLIRKPLVSFIGQSDHQAFFNYLTQLQHLDRGGE 140

Query: 382 KPVMLYRSDRTCIAASARLHTIQWN-RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
             V L   ++ C   +  + T+  +  +       +      +  E+  +   E E    
Sbjct: 141 WEVCLQPREKLCFDVALTVVTVCNDLGKPVALRWLMRDISKRKRLESEREQLFEREQAAR 200

Query: 441 RI------------NKRKMEIEVMQLCSILEATSDGIAIINREGIILST---NRAV---- 481
                            ++    +   + L   +        +  I+     N A     
Sbjct: 201 IAAEAAQRRSNFLAEASRVLASSLDYRNTLTTVAQLAVPTLADWCIVDVVENNSAAFNNP 260

Query: 482 ---------SKLFG-----YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
                      L       YP+           L    P ++ + L   L        E 
Sbjct: 261 VIAASDPQKEALVRKLRQRYPISIDADYGLPKVLRTGKPELVANILEYSL-QRKAWNDEY 319

Query: 528 ITLGSTKEEKLLSLRI------IIKKLPFSSCYSLTMHDIS------EWKQEKNKLSHAK 575
           + L   K   ++ L++       I           T  D++      +      + +   
Sbjct: 320 LNLLQVKSYMVVPLQVRQHKLGTIVFASTQLGRYYTTVDLAMAEQLAQRAASAIENAQLY 379

Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
             A++ +  K +FLA VSHE+RTPL +++G+ ++I++++       +       I+R+  
Sbjct: 380 WQAQEANRIKDEFLAIVSHELRTPLNSMLGWVQIIRHRKLDEAITSKA---LETIERNAK 436

Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695
           L   +++D+LDIS+I  GK+ L+   V L   ++ AI  +   +  K I + ++  +++ 
Sbjct: 437 LQSKLIDDILDISRIVQGKIRLNLRKVDLVIVINTAIEAIYPTSEIKDIQVESNLDSSVG 496

Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755
            I+ D   ++Q+  N+LSNA+ FTPSGG++ +      N    + V DTG G++   L  
Sbjct: 497 EIMGDAERLQQVVWNLLSNAVKFTPSGGRVEVCLKQV-NSNAQISVSDTGKGISGEFLPY 555

Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFPLYD 812
             + F Q  ++      G GLGL + + +V+ + G  Y  S     G    ++ PL +
Sbjct: 556 IFERFRQADSTTTRVDGGLGLGLAIVRHLVEIHSGTVYAVSEGEGLGATFTVLLPLIE 613


>gi|255036993|ref|YP_003087614.1| Hpt sensor hybrid histidine kinase [Dyadobacter fermentans DSM
           18053]
 gi|254949749|gb|ACT94449.1| Hpt sensor hybrid histidine kinase [Dyadobacter fermentans DSM
           18053]
          Length = 854

 Score =  281 bits (718), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 75/255 (29%), Positives = 133/255 (52%), Gaps = 11/255 (4%)

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
              DI++    + +L  AK+ AE  S  K  FLA +SHEIRTPL +IIG++E +KN+   
Sbjct: 328 IFTDIAKSNDYRQQLEEAKEEAEYHSMAKQRFLANMSHEIRTPLQSIIGYAEALKNEEKP 387

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
              +         +  +   +L +VN++LD S+I S +        S++  ++E + +++
Sbjct: 388 RKQD------LETLHSASEHLLYLVNEVLDYSRIISDRFTFEERVFSINPLLNEVVQVLR 441

Query: 677 LYANEKRILIRTS--FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
             A  K +++R       N+  +  D   ++Q+  N+L+NAI FT +G  ++  T H + 
Sbjct: 442 PTALSKGLILRLENSLKPNL-YLHGDPFRLRQVLYNLLTNAIKFTENGEVVLKVTGHETG 500

Query: 735 EEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
               +   + DTG+G++  ++E+    F Q   S Q +  GTGLGL + KA+V+   G  
Sbjct: 501 NAAKIEYQISDTGIGLSADQVERIFNQFEQADPSIQRKYGGTGLGLSIVKALVEGMSGNI 560

Query: 793 YIFSTPAKGTLIEII 807
           ++ S P +GT   + 
Sbjct: 561 HVTSKPGEGTTFFVT 575


>gi|212527504|ref|XP_002143909.1| sensor histidine kinase/response regulator, putative [Penicillium
            marneffei ATCC 18224]
 gi|210073307|gb|EEA27394.1| sensor histidine kinase/response regulator, putative [Penicillium
            marneffei ATCC 18224]
          Length = 2403

 Score =  281 bits (718), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 75/250 (30%), Positives = 124/250 (49%), Gaps = 10/250 (4%)

Query: 565  KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
            K  + + +H  K+ E  +  KS FLA VSH++RTP+  +IG SE++K  +     +    
Sbjct: 1866 KIAEAEANHNVKLKEDAARAKSVFLANVSHDLRTPMNGVIGLSELLKGTKL----DKEQD 1921

Query: 625  EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
             Y   I    + +L ++ND+LD SK+E+GKM +   P+SL E +SE +  ++    ++ +
Sbjct: 1922 NYVESIRVCADTLLTLINDILDFSKLEAGKMKISTVPLSLKETISEVVRALRYTHRDRGL 1981

Query: 685  LIRTSFA--NNIPRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL-- 739
                          ++ D   + QI +N+LSN+  FTP G  ++           V L  
Sbjct: 1982 ETIEDLDMVPEDLVVMGDPVRLHQIFMNLLSNSYKFTPKGHVKVTAMVVREGKGRVRLEC 2041

Query: 740  RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA-NMGKFYIFSTP 798
             V DTG+G+      +  +PF Q  NS      G+GLGL + KA+++    G  ++ STP
Sbjct: 2042 SVSDTGIGIPEEHKSRLFRPFSQADNSTARSYGGSGLGLSICKAIIEDVLGGLIWLDSTP 2101

Query: 799  AKGTLIEIIF 808
              GT +    
Sbjct: 2102 GVGTTVTFQL 2111


>gi|67923164|ref|ZP_00516653.1| ATP-binding region, ATPase-like:Histidine kinase A, N-terminal
           [Crocosphaera watsonii WH 8501]
 gi|67855006|gb|EAM50276.1| ATP-binding region, ATPase-like:Histidine kinase A, N-terminal
           [Crocosphaera watsonii WH 8501]
          Length = 445

 Score =  280 bits (717), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 86/255 (33%), Positives = 140/255 (54%), Gaps = 8/255 (3%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
             K+ + +     K  +   ++KSD+ + VSHE+RT L  I+G S+++K + +GPL N +
Sbjct: 194 RIKKIELE----NKQLKSSKNNKSDYFSHVSHELRTTLAGILGLSKMLKQELYGPL-NEK 248

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             EY N I  SG  +L +VND LD+SKIE+ K  L  E V++++     IS++Q  A+E+
Sbjct: 249 QKEYVNGIRVSGEHLLALVNDFLDLSKIEADKEELFLENVTVEDICLATISIIQPKADEQ 308

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
            I I    +  +     D R +KQI +N++SNAI FT  G  + +      N  +   V 
Sbjct: 309 NIDIILKVSEQVDFCTVDQRKIKQILINLMSNAIKFTEEGS-VTLQVEKVDN-WLKFCVI 366

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG+G+   + +K  +PF QI +    + +GTGLGL L++ +   + G+  + S   KG+
Sbjct: 367 DTGIGIKEEDQKKLFQPFQQIHSKLSRQHKGTGLGLALSRKLAQLHEGELTLTSEYGKGS 426

Query: 803 LIEIIFPLYDTSHPH 817
              +  PL   S P+
Sbjct: 427 CFTLELPL-KLSQPN 440


>gi|302872938|ref|YP_003841571.1| signal transduction histidine kinase, LytS [Clostridium
           cellulovorans 743B]
 gi|307686548|ref|ZP_07628994.1| signal transduction histidine kinase, LytS [Clostridium
           cellulovorans 743B]
 gi|302575795|gb|ADL49807.1| signal transduction histidine kinase, LytS [Clostridium
           cellulovorans 743B]
          Length = 1028

 Score =  280 bits (717), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 72/253 (28%), Positives = 124/253 (49%), Gaps = 3/253 (1%)

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            +   ++ +   NK     +   K    K +FLA  SHE+RTPL  II  +E + +   G
Sbjct: 421 VIVMTTQLEDMLNKEKTLTEKLTKLDKLKDEFLANTSHELRTPLNGIINMTEAVLSGAEG 480

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
            + N       + +  SG  + ++VND+LD+S+++   + L+ +     + +   +++ +
Sbjct: 481 YV-NDMQRRNLSLVVSSGKRLNNLVNDILDMSRLKYKDIRLNRKTYDAKKLIFSVVNIFE 539

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
                K++ I  S    +P IL D     QI  NI+ NA+ FT  G +I +ST    N  
Sbjct: 540 YIKPNKQVRIELSIEEKLPFILVDEDRFNQILFNIIGNAMKFTHKG-KIAVSTERIDN-F 597

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           V +R+ DTG+G++  +L++    F QI  S   +  G GLGL + K +V+ + G   + S
Sbjct: 598 VEIRIEDTGIGISEDKLDQIWNAFEQIDASITRKYGGMGLGLSITKNLVELHGGSINVES 657

Query: 797 TPAKGTLIEIIFP 809
              KGT+     P
Sbjct: 658 QINKGTIFRFTVP 670



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 43/273 (15%), Positives = 91/273 (33%), Gaps = 69/273 (25%)

Query: 550  FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                       ++E K+   K    +    +    K  FL  V       +  I+   + 
Sbjct: 811  EVDELLARTKTLTELKKSVIKAFDMEMAFLQA-QIKPHFLFNV-------INTIVALCD- 861

Query: 610  IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
                      +   IE+++Y+  S            D   +E        + ++L++ + 
Sbjct: 862  ----DNPEEASELLIEFSSYLRSS-----------FDFRNLE--------QAIALEKEIE 898

Query: 670  EAISLVQLYANE--KRILIRTSFANNI----PRILADLRSVKQIALNILSNAIHFT---- 719
               S ++L      +++ I     ++I    P +         +   ++ NA+       
Sbjct: 899  YVNSYLKLEKARFGEKLTIEFDIDDSIKAKIPPL---------VIQPLVENAVKHGVMKK 949

Query: 720  PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
              GG + +S    +N E+ + V+D GVG++   L+        + N  + R  G      
Sbjct: 950  SEGGTVRLSIK-ETNGEINVSVKDDGVGISKDILQGI------LKNDSKRRSVG------ 996

Query: 780  LAKAM---VDANMGK-FYIFSTPAKGTLIEIIF 808
              K +   +    G+   I S   +GT I+   
Sbjct: 997  -VKNIDKRLKRISGRGLQINSNEGEGTEIQFSI 1028


>gi|153806245|ref|ZP_01958913.1| hypothetical protein BACCAC_00500 [Bacteroides caccae ATCC 43185]
 gi|149130922|gb|EDM22128.1| hypothetical protein BACCAC_00500 [Bacteroides caccae ATCC 43185]
          Length = 500

 Score =  280 bits (717), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 105/532 (19%), Positives = 187/532 (35%), Gaps = 65/532 (12%)

Query: 313 AYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANP-SFLLLTKYKSVDDIEIAG------ 364
              +E      E ++  P    +   +G +   N  +   L  + SV+ +          
Sbjct: 1   MEVNEQTLYDDELLNILPDGVIILDINGKIIQLNQQALTELHVHSSVNTMMPLPTSQIFK 60

Query: 365 -------GLSTLLDAPKLSDNN---AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
                   LST+L+     +          +  + D T         TI+        + 
Sbjct: 61  LLNNKEDILSTILEKISQGERIYTLPEHTYIQEQVDHTQFPIRGEFATIRNKGNLKTILF 120

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDT---RINKRKMEIEVMQLCSILEATSDGIAIINRE 471
           F          E +    ++   +      IN+ +                     ++  
Sbjct: 121 FFRNITVELTQEYILNTALQRTRIYPWYYDINRSE-------------------FTLD-- 159

Query: 472 GIILSTNRAVSKLFGYPVED---ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528
                 NR  + L G P  +   +  + +   +  +    M       LS          
Sbjct: 160 ------NRYFTHL-GIPAGENNTLTMEEYVSMIHPDDRQTMADAFVVQLSGIETFDKAVP 212

Query: 529 TLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
                 +            +   S            I E+K  +N L  A+K AE+    
Sbjct: 213 FRLRRGDGTWEWFEGQSTYIANISGHPYRLVGICMSIQEYKDIENTLIEARKKAEESDRL 272

Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
           K  FLA +SHEIRTPL AI+GFS+VI +  +  L +    ++   I  +   ++ +++D+
Sbjct: 273 KMAFLANMSHEIRTPLNAIVGFSDVIAST-YNELSDEERADFVRLISINSEHLVRLIDDI 331

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704
           LD+SKIES  +   +   SL   + +     Q       I I+    ++   I  D   +
Sbjct: 332 LDLSKIESNTIKFTYSCCSLKSMMKDIEKE-QAVKQLPEIEIKALLPDDDIYINTDATRL 390

Query: 705 KQIALNILSNAIHFTPSGGQIII--STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
           KQ+  N ++NA  FT  G  I    ++    ++ V L V DTG G+     ++    F +
Sbjct: 391 KQVICNFINNARKFTEKG-YIHFGFTSHSEKDQLVYLFVEDTGEGIPQECQKEIFDRFYK 449

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           +   +    +GTGLGL + K +V+   G   + S   KG+   +  P    S
Sbjct: 450 VNTFK----QGTGLGLSICKTIVEHLQGSISVESEIGKGSRFIVTLPFKRQS 497


>gi|327482523|gb|AEA85833.1| sensor histidine kinase/response regulator [Pseudomonas stutzeri
           DSM 4166]
          Length = 1170

 Score =  280 bits (717), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 108/634 (17%), Positives = 230/634 (36%), Gaps = 55/634 (8%)

Query: 182 GIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS 241
           GI    R   +      R  +     ++ +   +     +  + ++++    +     + 
Sbjct: 131 GIAR--RSAGESIVEYVRTRRGLDLTNQRRTLLNEFIATERQLRAERTDTSEIVTTALIG 188

Query: 242 SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301
               +      +L       LT+  ++  E       +     K+ ++ T Q    ES  
Sbjct: 189 GFLLFSLIFSGLLVFLGRRDLTTLSATYSESLRKQQAHAEALEKQAWYRTGQTQLSESII 248

Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLL---LTKYKSVD 358
                   +L A      N     +D      +V   G L            L   +S++
Sbjct: 249 G-----ELALPALGQGVLNFLSRYIDAAVGALYVVQDGKLQRVAEYAYDPEHLQSARSLE 303

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
                 G + L       ++     + +  +       +  +  ++ +      +     
Sbjct: 304 VGTGLVGQAALERRMMALEDLPAGYLKVTSALGDTTPRAVLIVPVEDSG-----LLNGVI 358

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
           E     P     + +      +  +  +      +L  +L  T      +N E  +    
Sbjct: 359 ELGFLRPLREQDSELLRRIAPSIGSAIEAARYRQRLQKVLAETQQ----LNEELQVQ--- 411

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
               +      E++  +   +     + + M     E+   + +   +   L   +++  
Sbjct: 412 ---QEELRAANEELEEQSNALR---ESQTHMEEQQAELEQTNEQLAEQTEALARQRDQ-- 463

Query: 539 LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKK--IAEKESSHKSDFLARVSHEI 596
                                D    +  + +L   ++    ++ S +KS+FLA +SHE+
Sbjct: 464 --------------------MDEKNQRLNEAQLMLEQRADELQRASRYKSEFLANMSHEL 503

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTPL + +  ++++ +   G L     +++A  I  +GN +L ++ND+LDISK+E+GK+ 
Sbjct: 504 RTPLNSSLILAKLLADNPAGNLS-EEQVQFARSIYSAGNDLLTLINDILDISKVEAGKLE 562

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNA 715
           +H E   L   V    SL    A EK +      A+++P  +  D + ++QI  N+L+NA
Sbjct: 563 VHPELTILARLVDGMKSLFLPQAMEKALSFSVELADDLPPTLFTDRQRLEQILKNLLANA 622

Query: 716 IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
             FT  G  + +         +   VRDTG+G+   +     + F Q   +   R  GTG
Sbjct: 623 FKFTEKGS-VTLRVEPRDGGMLAFAVRDTGIGIAPEQQAAIFEAFRQADGTTNRRYGGTG 681

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           LGL +++ + +   G+  + S P  G+   ++ P
Sbjct: 682 LGLSISRELANLLGGQIEVQSAPGAGSTFTLVLP 715


>gi|262041527|ref|ZP_06014724.1| sensor protein GacS [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|259041088|gb|EEW42162.1| sensor protein GacS [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
          Length = 916

 Score =  280 bits (717), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 84/333 (25%), Positives = 150/333 (45%), Gaps = 17/333 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +FG+ +   +  P    +               L   +   +             +++ +
Sbjct: 193 IFGWRLMRDVTGPIRNMVNTVDR-----IRRGQLDSRVEGFMLGELDMLKNGINSMAMSL 247

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 248 AAYHEEMQHNVDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTP 307

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+ +          N    ++   I+RS N +L I+ND+LD SK+E+GK+ L  
Sbjct: 308 LNGVIGFTRLTLKTDL----NATQRDHLTTIERSANNLLAIINDVLDFSKLEAGKLILES 363

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P  L  ++ E ++L+   A++K + +  +  NN+P  ++ D   ++QI  N++ NAI F
Sbjct: 364 IPFLLRTSLDEVVTLLAHSAHDKGLELTLNIKNNVPDNVIGDPLRLQQIVTNLVGNAIKF 423

Query: 719 TPSGGQ-IIISTTHTSNEEVILRVR--DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T  G   +++     SN  V + ++  DTG+G+   +  +  + F Q   S   R  GTG
Sbjct: 424 TEHGNIDVLVEQRAISNSRVQIEIQIHDTGIGIPERDQSRLFQAFRQADASISRRHGGTG 483

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           LGL + + +V    G     S P +G+      
Sbjct: 484 LGLVITQRLVKEMGGDISFHSQPNRGSTFWFHI 516


>gi|238920517|ref|YP_002934032.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Edwardsiella ictaluri 93-146]
 gi|238870086|gb|ACR69797.1| sensor kinase protein RcsC [Edwardsiella ictaluri 93-146]
          Length = 984

 Score =  280 bits (717), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 92/372 (24%), Positives = 156/372 (41%), Gaps = 29/372 (7%)

Query: 444 KRKMEIEVMQLCSILEATSDGI-AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
             ++E        I+ +   GI  +  R+G  + +N                  +     
Sbjct: 380 ALRLEEHEQFNRKIVASAPVGISILRARDGSNILSNELA-------------HNYISQFT 426

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
                     +T I+  +    L+ IT+    + + L +  +  +          M D+S
Sbjct: 427 PEDRQ----RITRIICEEPISVLDVITV----QNQNLQISFVRSRYRNEDVAICAMVDVS 478

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
              + +  L      AE+ S  KS FLA VSHE+RTPL  IIG  ++++ +         
Sbjct: 479 ARVKMEESLQEMAAAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLRTKTL----PEE 534

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                  +  S  L+L I+ND+LD SKIES ++ +        E +   I         K
Sbjct: 535 VQRLLGAMSNSSGLLLKIINDILDFSKIESEQLKIEPGRFVPREVIPHIIGNYLPLVVRK 594

Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
           R+ +       +P  +  D+  ++Q+  N+LSNAI FT +G  II+         +  RV
Sbjct: 595 RLTLYCFIEPEVPEALSGDIMRIQQVLSNLLSNAIKFTDTG-CIILQARVNDF-YLEFRV 652

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
           RDTG+G+   ++ +   PF Q+ +  Q    GTGLGL + + +V    G   + S+P  G
Sbjct: 653 RDTGLGIPPRDVLRLFDPFFQVGSGVQRHFHGTGLGLAICEKLVSLMDGDIAVESSPGLG 712

Query: 802 TLIEIIFPLYDT 813
           ++  I  P+Y  
Sbjct: 713 SIFTIRLPMYQA 724


>gi|206578572|ref|YP_002236863.1| signal transduction histidine-protein kinase BarA [Klebsiella
           pneumoniae 342]
 gi|206567630|gb|ACI09406.1| signal transduction histidine-protein kinase BarA [Klebsiella
           pneumoniae 342]
          Length = 916

 Score =  280 bits (717), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 84/333 (25%), Positives = 150/333 (45%), Gaps = 17/333 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +FG+ +   +  P    +               L   +   +             +++ +
Sbjct: 193 IFGWRLMRDVTGPIRNMVNTVDR-----IRRGQLDSRVEGFMLGELDMLKNGINSMAMSL 247

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 248 AAYHEEMQHNVDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTP 307

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+ +          N    ++   I+RS N +L I+ND+LD SK+E+GK+ L  
Sbjct: 308 LNGVIGFTRLTLKTDL----NATQRDHLTTIERSANNLLAIINDVLDFSKLEAGKLILES 363

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P  L  ++ E ++L+   A++K + +  +  NN+P  ++ D   ++QI  N++ NAI F
Sbjct: 364 IPFLLRTSLDEVVTLLAHSAHDKGLELTLNIKNNVPDNVIGDPLRLQQIVTNLVGNAIKF 423

Query: 719 TPSGGQ-IIISTTHTSNEEVILRVR--DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T  G   +++     SN  V + ++  DTG+G+   +  +  + F Q   S   R  GTG
Sbjct: 424 TEHGNIDVLVEQRAISNSRVQIEIQIHDTGIGIPERDQSRLFQAFRQADASISRRHGGTG 483

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           LGL + + +V    G     S P +G+      
Sbjct: 484 LGLVITQRLVKEMGGDISFHSQPNRGSTFWFHI 516


>gi|197283967|ref|YP_002149839.1| phosphate regulon sensor protein [Proteus mirabilis HI4320]
 gi|227358159|ref|ZP_03842500.1| phosphate regulon sensor protein (two-component histidine kinase)
           [Proteus mirabilis ATCC 29906]
 gi|194681454|emb|CAR40292.1| phosphate regulon sensor protein (two-component histidine kinase)
           [Proteus mirabilis HI4320]
 gi|227161495|gb|EEI46532.1| phosphate regulon sensor protein (two-component histidine kinase)
           [Proteus mirabilis ATCC 29906]
          Length = 430

 Score =  280 bits (717), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 73/402 (18%), Positives = 138/402 (34%), Gaps = 33/402 (8%)

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
              L +         +        GI       R  +R++   + +  S  E+  D + +
Sbjct: 54  SKWLWLDRSVLPPEGKGGWEPIFYGIRQTQQRNRKRRRELGDLIKRFRSGAESLPDAVVM 113

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
           I  EG I   N     L G+   D   +     L                         +
Sbjct: 114 ITNEGNIFWCNSLAQHLLGFRWPDDNGQNIFNLLRYPDFLHYF----------TVADFSR 163

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
               +     ++  R++           +   D++E  + +              + + D
Sbjct: 164 PLTIALNNGAIVEFRVMPY---ADDQRLMVARDVTEKNKLE--------------NSRRD 206

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           F A VSHE+RTPLT I G+ E+++        NP   +    +      +  +V  LL +
Sbjct: 207 FFANVSHELRTPLTVIQGYLEMMEEN---TAENPAEHKVIKTMQEQAKRMDLLVQQLLQL 263

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707
           S+IES         V +   +   +       ++++  I     +    +  +   ++  
Sbjct: 264 SRIESAPHIDLNTVVDMPALL-SVLEHDAHSLSQEQQNIIFDIDHK-WAVRGNEEQLRSA 321

Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
             N++ NAI+ TP G  I +S        +   V D G G++   L +  + F ++  ++
Sbjct: 322 VSNLVYNAINHTPEGTTIRVSWKKVPQGML-FSVSDNGPGISAEHLTRLTERFYRVDKAR 380

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
                GTGLGL + K  +  +     I S    G+    I P
Sbjct: 381 SRHTGGTGLGLAIVKKSLQHHHSILNIESKVGVGSTFSFIMP 422


>gi|13473249|ref|NP_104816.1| hybrid sensory histidine kinase [Mesorhizobium loti MAFF303099]
 gi|14023997|dbj|BAB50602.1| Hybrid sensory histidine kinase [Mesorhizobium loti MAFF303099]
          Length = 786

 Score =  280 bits (717), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 86/327 (26%), Positives = 147/327 (44%), Gaps = 18/327 (5%)

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            ++   +      +     ++    T +             L       L  +  I+   
Sbjct: 150 ADEWSYREIRNQNDLFVQPMLVRVRTAMDEERHLADASSDRLLLWASGLLFGVLAIVA-- 207

Query: 549 PFSSCYSLTMHDISEW-KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
                       + +  ++   + + +   AE     KS+FLA +SHEIRTP+  ++G +
Sbjct: 208 ------FWIFRPMEQAIRRAFAQSAESLFKAEAADRAKSEFLANMSHEIRTPMNGVLGMA 261

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
           E++      P    R   + + I +SGN +L I+ND+LD SKI +G++ L   P  L EA
Sbjct: 262 ELLAKTELTP----RQKTFTDVIVKSGNALLTIINDILDFSKINAGQLTLDPAPFRLTEA 317

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII 726
           V +  +LV     EK + +       +P  ++ D    +QI  N++ NA+ FT  G  ++
Sbjct: 318 VEDVATLVSARVAEKNLELIVRVDPRLPAHVVGDAGRFRQIVTNLVGNAVKFTEKG-HVL 376

Query: 727 ISTTHTSNEEVI---LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
           I     +  +V+   LRV DTG+G+   +L+   + F Q+  S   R EGTGLGL +A  
Sbjct: 377 IDVGGETVNDVVQLRLRVEDTGIGIPAEKLQNVFEKFAQVDGSSTRRHEGTGLGLAIAAR 436

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFPL 810
           +VD   GK  + S   +G++     PL
Sbjct: 437 LVDLMAGKIGVESEIGRGSVFWFAVPL 463


>gi|212634121|ref|YP_002310646.1| phosphate regulon sensor protein PhoR [Shewanella piezotolerans
           WP3]
 gi|212555605|gb|ACJ28059.1| Phosphate regulon sensor protein PhoR [Shewanella piezotolerans
           WP3]
          Length = 440

 Score =  280 bits (717), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 83/413 (20%), Positives = 163/413 (39%), Gaps = 36/413 (8%)

Query: 409 NSLAMTFIPFEKANQFPENMPQN-GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
           N            N          GI       R    ++   + +     EA  D   +
Sbjct: 54  NFWLWHDRRLTPPNGSGSWEGVFNGIYRLQGKNRKRVSQLAFLLGRFRQGAEALPDAAVV 113

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
           ++ E  IL  N+    L G+       +     +     S           L+L   L  
Sbjct: 114 LDSEHNILWCNKLAQLLLGFVWPQDNGQRIDNLIRHPDFSNYLKLAEYQEPLELAAPL-- 171

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
                  E +LL +RI+      S    L   DI+  +Q +                + +
Sbjct: 172 ------SEGRLLEIRIM---GYGSGQLLLIARDITRVRQLEG--------------MRKE 208

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           F+A VSHE++TPLT + G+ E++++       N   +   + + +  + +  +V  LL +
Sbjct: 209 FVANVSHELKTPLTVLQGYLEMMQSMEEPGSPN---VRALDQMQQQTSRMRSMVEQLLAL 265

Query: 648 SKIE-SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706
           S+IE SG ++L  + V++ + + + +    L   +K+  +       +  +  +   ++ 
Sbjct: 266 SRIEDSGDVDLEVK-VNMSQMM-DILRDEALALAQKQYDVTLYCEPGL-DMYGNEVQLRS 322

Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
              N++SNAI +T  GG I IS    ++      V D+G G+    + +  + F ++ ++
Sbjct: 323 ACTNLISNAIRYTEPGGNIDISWRKIASGG-EFSVSDSGEGIAPQHISRLTERFYRVDSA 381

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP--LYDTSHPH 817
           +  +  GTGLGL + K  ++ +  +  + S   KG+    + P  L + S P 
Sbjct: 382 RSRQSGGTGLGLAITKHALNHHQSELMVSSQLGKGSTFSFVIPPNLIEYSQPE 434


>gi|197119311|ref|YP_002139738.1| substrate-binding sensor histidine kinase response regulator
            [Geobacter bemidjiensis Bem]
 gi|197088671|gb|ACH39942.1| periplasmic substrate-binding sensor histidine kinase response
            regulator, PAS and Hist_Kin_Sens domain-containing
            protein [Geobacter bemidjiensis Bem]
          Length = 1279

 Score =  280 bits (717), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 112/753 (14%), Positives = 237/753 (31%), Gaps = 101/753 (13%)

Query: 86   TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
             + +   G +   +      +G    + + M + +++    ++  N     LK + T   
Sbjct: 477  VYWVTPQGSIWYANHAASAMLGYSREEFLCMAVAELNPAYPMEVWNEYWQELKLKGTLQL 536

Query: 146  KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR-ALGKRLDKKF 204
            +T     +G  + V I                      V           AL  RL    
Sbjct: 537  ETAHRAKDGRMVPVEITSNYCSYNGTEFN------CATVRDIAERKHMELALEHRLAVLT 590

Query: 205  SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
              +  + +       +  ++ + Q                   +H    L T+      +
Sbjct: 591  EPMVNLARITVEDLFDLEELQAIQDSF--------------AESHGVASLITDAQGRPVT 636

Query: 265  EESSLPEQ-EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
              S+  E  E            +     L    +                          
Sbjct: 637  RPSNFCELCEVIRGTEAGLANCRHSDAALVGMDRSGPCLQPC------------------ 678

Query: 324  ETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
                      +    G           L        ++ +  L  ++     +D     P
Sbjct: 679  -----LSGGLWDGGAGIHVGGYHVGNWLVG----QVLDESCDLERMVQ---YADEIGADP 726

Query: 384  VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
            V             A     + +RE    +    F+ A Q      QN  + + +  R+ 
Sbjct: 727  VRYR---------DALSRVQRMSREQFEKVCRSLFQIAGQLSRMAIQNVQQAQHIADRVR 777

Query: 444  KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
              ++ +E      ++E + D I +I+R+      NR+  +     +++++ +     L +
Sbjct: 778  SEELLLE---YRKVIECSQDQICVIDRDYRYRIANRSFLEYRRMSLDEVVGRTVAEVLGE 834

Query: 504  NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---YSLTMHD 560
               + +   + E L+ +            + E+   SL +    +   S     +  + D
Sbjct: 835  ELFAEVKPQVDECLAGNAVS---FEIETESAEQGARSLAVAYNPIEDKSGSIRVACVISD 891

Query: 561  ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
             +E K    +L  ++K+              ++H+    LT I+G+  +++         
Sbjct: 892  QTEKKHLGEQLRQSQKM-----EAVGHLAGGIAHDFNNILTVIVGYGNLLE---MDGSLT 943

Query: 621  PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
            P   E    I  +      +   LL  S+    +  ++   + L+  V++    + L   
Sbjct: 944  PHQKEQVEQIVAASERGAQLTRGLLTFSR----RQIMNPCVLDLNALVNQIQKFL-LRII 998

Query: 681  EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS------- 733
             + I +R +   +   + AD   ++QI +N+ +NA    P GG + I T           
Sbjct: 999  GEDIRLRFNPHPDALNVWADASQLEQILMNLATNARDAMPQGGGLSIETGVQEIDEAYAR 1058

Query: 734  -------NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
                        + V DTG GM     E+  +PF     S ++ G+GTGLG+ +   +V 
Sbjct: 1059 SQGYGSPGRYACMMVSDTGEGMDQKTRERIFEPFF----STKVVGKGTGLGMSIVYGIVK 1114

Query: 787  ANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819
             + G   ++S P +GT  +I  PL +     + 
Sbjct: 1115 QHKGFINVYSEPGEGTAFKIYLPLIEREAEQEA 1147



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 44/306 (14%), Positives = 88/306 (28%), Gaps = 20/306 (6%)

Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV------DKCPIPFFVYSHGNL 341
                  +     E L   N        DE      + +      D   +   +   G +
Sbjct: 293 EMARQAEDRLRIEETLFFINECGARQREDELLAGICQYLCACLDTDYAFVGELLAEKGRI 352

Query: 342 FYANPSFL-LLTKYKSVD-DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399
                SF       + ++ D+  A     +  A ++  +   +   L R  +   A    
Sbjct: 353 R--TRSFQGRGGGIEDLEYDLLGAPCQDVVGKALRIHPSGVRELYPLQRMLQDLEAEGYA 410

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS--- 456
              ++       A+  +                +          + +    +  L     
Sbjct: 411 GLPLR--DSQGNAIGILAILSRRPLANLPIIGTVLRIAGARMAQELEAMSHLEDLNLKDF 468

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
            +E  +D +  +  +G I   N A S + GY  E+ L              V N Y  E+
Sbjct: 469 TIENINDAVYWVTPQGSIWYANHAASAMLGYSREEFLCMAVAELNPAYPMEVWNEYWQEL 528

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCYSLTMHDISEWKQEKNKLSHA 574
                  TL+  T    K+ +++ + I         +     T+ DI+E K  +  L H 
Sbjct: 529 KLKG---TLQLETAHRAKDGRMVPVEITSNYCSYNGTEFNCATVRDIAERKHMELALEHR 585

Query: 575 KKIAEK 580
             +  +
Sbjct: 586 LAVLTE 591


>gi|182415595|ref|YP_001820661.1| integral membrane sensor hybrid histidine kinase [Opitutus terrae
           PB90-1]
 gi|177842809|gb|ACB77061.1| integral membrane sensor hybrid histidine kinase [Opitutus terrae
           PB90-1]
          Length = 606

 Score =  280 bits (717), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 85/288 (29%), Positives = 135/288 (46%), Gaps = 18/288 (6%)

Query: 534 KEEKLLSLRIIIK---------KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
            +       I I          +L            I E ++    LS AK+ A+  +  
Sbjct: 175 PDGGWTLALITITYALFLINTMRLHHGD-LRRLWQLIFENEELVGTLSQAKERADAANRA 233

Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
           KSDFLA +SHEIRTP+  I+G  +V+     G                S   ++ ++ND+
Sbjct: 234 KSDFLATMSHEIRTPMNGIMGMLQVL----HGSSLTVEQRAQVEIAGNSAESLMRLLNDI 289

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRS 703
           LD SKIESGK+        L  A+ + +SL++  A EK + +     +N+P  ++ D   
Sbjct: 290 LDFSKIESGKLEFESVSFDLKAALHDVVSLLRPRAAEKGLALELHLPDNLPDHVIGDSVR 349

Query: 704 VKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760
           +KQ+ LN+  NAI FT  G    ++ +S   T++  V   VRDTG+GM +   +K  + F
Sbjct: 350 LKQVLLNLTGNAIKFTEQGEVALRVRVSQRDTTSARVGFSVRDTGIGMDDATRQKLFQLF 409

Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            Q  +S   R  GTGLGL +++ + +   GK  + S+P +G       
Sbjct: 410 SQGDSSMNRRFGGTGLGLAISQRLAEHMGGKIEVRSSPGQGAEFSFEL 457


>gi|170078960|ref|YP_001735598.1| two-component hybrid sensor kinase/response regulator
           [Synechococcus sp. PCC 7002]
 gi|169886629|gb|ACB00343.1| two-component hybrid sensor and regulator (His Kinase A domain
           protein) [Synechococcus sp. PCC 7002]
          Length = 372

 Score =  280 bits (717), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 74/352 (21%), Positives = 146/352 (41%), Gaps = 26/352 (7%)

Query: 481 VSKLFGYPVEDI--LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
            +++ GY   ++    + +   L  +  + +   L +  +   +Q  E        +   
Sbjct: 31  FTRVLGYSAAEMGNDCQTWLERLYPDDQTKVLATLEQAFAQ--QQAYELDYRFQHHDGSY 88

Query: 539 LSLRIIIKK------LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
           + ++                     M DIS+ KQ +  + +A    ++ +  K+ F+   
Sbjct: 89  VWIQDRGVPKDITAQDSDQFWVIGVMRDISDRKQVELDMHNALMREKELNQLKTRFIDIA 148

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHE RTPLT+I+GF+E +  Q            +   I  +   +  +V+D+L +S++++
Sbjct: 149 SHEFRTPLTSILGFTE-LLEQYAHKFNPEAQRRHLQRIKGAAQRLQTLVDDVLSVSRVDA 207

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV-------- 704
           G++ L   PV  +    + I  +Q+        IR  F   +P+   D R +        
Sbjct: 208 GQLTLEPAPVHFEGLCQDIIEELQVVF-GHTHPIRFDF---VPQYQGDRRLLPVLDAKII 263

Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764
           + I  N+LSNA+ ++  G  + +        ++ + + D G+G+   +L    +PF +  
Sbjct: 264 RHILSNLLSNALKYSFPGEAVSLVVCCGDR-QISITITDRGIGIPQADLPHLFEPFHRAQ 322

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           N    +  GTGLGL + K  +D + G   + S    GT   +  P    S P
Sbjct: 323 N--VGKIPGTGLGLHIVKRYIDLHNGTIMVASLVNSGTTFRVKIPCSFVSKP 372


>gi|94270842|ref|ZP_01291836.1| PAS:Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93450644|gb|EAT01749.1| PAS:Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 650

 Score =  280 bits (717), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 84/411 (20%), Positives = 156/411 (37%), Gaps = 33/411 (8%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
                       QN +  +  + RI + ++E E  +   +      G   ++ +G+IL  
Sbjct: 113 ARVEVGRRLVKTQNALAEKIEELRIAQAEIEAERARYFELYNLAPAGYCTLSEQGLILEA 172

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
           N   + L G    ++L++PF+ F+ +        +  ++   D     E        +  
Sbjct: 173 NLTAATLLGVNRGELLKQPFSRFILKEDQDTYYRHHKQLFDTDQPH--EYELRLVKADGT 230

Query: 538 LLSLRIIIKKLPFSSCY---SLTMHDISEWKQEKNKLSHAKKIAEKESSHKS--DFLARV 592
           L                    + M DI+E KQ + +        ++    +S       V
Sbjct: 231 LFWAHQAATAAQAEEGAPVCRMVMSDITERKQVEAEQEKLHMQLQQAQKMESVGRLAGGV 290

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           +H+    L+ I+G+  ++  Q           +    I  +GN    +   LL  S+   
Sbjct: 291 AHDFNNMLSVILGYGALLLQQLR---PGDPLRDEVQEIVTAGNRSAALTRQLLAFSR--- 344

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712
            K +L  E + L+  V     ++      + I +  + +  + R+LAD   ++Q+ +N+ 
Sbjct: 345 -KQSLQPEVLDLNALVRNLEKML-PRLIGEDIKLELALSEKLDRVLADPGQIEQVIINLA 402

Query: 713 SNAIHFTPSGGQIIISTT--------------HTSNEEVILRVRDTGVGMTNYELEKAMK 758
            NA    P GG+++I T+                  + V+L + DTG GM    L K   
Sbjct: 403 VNARDAMPMGGKLLIETSEVELGDAYGQNHPGVVPGKYVMLAISDTGCGMEKELLAKIFD 462

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           PF          G+GTGLGL     +V  + G  +++S P  GT  +I  P
Sbjct: 463 PFFTTK----EMGKGTGLGLATVYGIVKQSGGNIWVYSEPGHGTTFKIYLP 509



 Score = 38.1 bits (87), Expect = 5.7,   Method: Composition-based stats.
 Identities = 30/350 (8%), Positives = 87/350 (24%), Gaps = 22/350 (6%)

Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP----PHLRMKNKVS 241
            +   N   A+ +    + +   +       ++K      +           L + ++V 
Sbjct: 9   DSTSRNMLAAILREAGHEVTETFDGAGAWEELQKPDAPRLAILDWMMPGMDGLEVVHRVR 68

Query: 242 SLTEYYAHKDDVLKTEKY-PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF 300
            +         +L  +     + +   +          +  +   +   G     ++ + 
Sbjct: 69  GVETDQPPYLIMLTAKGEKADIIAGLDAGANDYLAKPFDAGEMLARVEVGRRLVKTQNAL 128

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDD 359
                    +  A  +       E  +  P  +  +   G +  AN +   L      + 
Sbjct: 129 AEKIEELRIAQ-AEIEAERARYFELYNLAPAGYCTLSEQGLILEANLTAATLLGVNRGEL 187

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
           ++             L ++         +   T       L  ++ +     A       
Sbjct: 188 LKQP------FSRFILKEDQDTYYRHHKQLFDTDQPHEYELRLVKADGTLFWAHQAATAA 241

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI--LEATSDGIAIINREGIILST 477
           +A +            +  + +  + + E   MQL     +E+           G+    
Sbjct: 242 QAEEGAPVCRMV--MSDITERKQVEAEQEKLHMQLQQAQKMESVGRL-----AGGVAHDF 294

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
           N  +S + GY    + +      L      ++                 +
Sbjct: 295 NNMLSVILGYGALLLQQLRPGDPLRDEVQEIVTAGNRSAALTRQLLAFSR 344


>gi|323691353|ref|ZP_08105628.1| hypothetical protein HMPREF9475_00490 [Clostridium symbiosum
           WAL-14673]
 gi|323504693|gb|EGB20480.1| hypothetical protein HMPREF9475_00490 [Clostridium symbiosum
           WAL-14673]
          Length = 748

 Score =  280 bits (717), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 84/273 (30%), Positives = 136/273 (49%), Gaps = 22/273 (8%)

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           K +  ++  AK+ AE  +  KS FL+ +SH+IRTP+ AIIG +  I  +  G     R  
Sbjct: 340 KGQYLEIIRAKEEAEAANRAKSMFLSNMSHDIRTPMNAIIGMT-RIARENIG--DGERVE 396

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           +    ID S  L+L I+ND+LD+SKIE+ K+ L  E  S+   +     +++  A  K++
Sbjct: 397 DCLKKIDISSRLLLGIINDVLDMSKIEARKVELAREAFSMGAMIDSNRMIMERQAENKQL 456

Query: 685 LIR---TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST-----THTSNEE 736
            +    T+  ++   ++ D   + QI +NILSNA+  TP GG+I         T   +  
Sbjct: 457 TLEFKKTNLNHD--AVVGDSVRLSQIIMNILSNAVKCTPEGGRITFEIIELPCTREDSGR 514

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
               + DTGVGM+    +   +PF Q  +  + R +GTGLG+ + K +V+   G   + S
Sbjct: 515 YRFVISDTGVGMSEEFQKHIFEPFTQENDYGRSRYKGTGLGMAITKKLVELMGGTVEVES 574

Query: 797 TPAKGTLIEI--IFPLYD-------TSHPHDCI 820
              +GT+  +    PL         T  P D +
Sbjct: 575 RQGEGTVFRVELELPLASQEEVQSGTKEPEDSV 607


>gi|190894857|ref|YP_001985150.1| putative two-component sensor histidine kinase/response regulator
           hybrid protein [Rhizobium etli CIAT 652]
 gi|190700518|gb|ACE94600.1| probable two-component sensor histidine kinase/response regulator
           hybrid protein [Rhizobium etli CIAT 652]
          Length = 780

 Score =  280 bits (717), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 96/749 (12%), Positives = 221/749 (29%), Gaps = 89/749 (11%)

Query: 129 PNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIV---- 184
           P   + D L  +                  +P+ +   P        +GF    +     
Sbjct: 41  PELILLDALSPEGRGLEDCRRLKGNAVTRDIPVIIVVSP-QDEQTRIAGFAAGAVDCVSN 99

Query: 185 ------------HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP 232
                           +      L +R ++  + L  + +G    +++   + S      
Sbjct: 100 LVSAAELVARIKRHIELGAAQAHLRRRNEQLDTALASMGQGVCLFDEDGRLLLSNNRYAE 159

Query: 233 HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT- 291
              +   V    +       + +       TS    L      +  +  Q   K+     
Sbjct: 160 VYGLDPAVIHPGQSLEDILKLREDVGAVPATSTSDYLAWAVATNMGDAPQDWIKELKTGQ 219

Query: 292 -LQNNSKESFE--------------------YLSHRNHPSLSAYFDEGENLTPETVDKCP 330
            ++   + + E                      +H                     +  P
Sbjct: 220 IIRGYHQRTPEGGWVSTHEDITQAWFAEKALAEAHAQAERAEQEARAAHARLLAAFEVVP 279

Query: 331 IPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389
               ++         N  +  L        ++       L    +               
Sbjct: 280 EGLVLFDAEDRFVLWNRRYEQLYAESGDMLVKGMRFEDRLRTGLECGQYPEA-----VGR 334

Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449
           ++  +      H    ++               +        GI  +  D       +++
Sbjct: 335 EQEWLEERLAHHAEPTSKHEQRLPGNRWIRIEERRISEGGSVGIRVDITD-------LKM 387

Query: 450 EVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
           +      + E     + + +RE    L  N+A    +GY +E  L               
Sbjct: 388 QEASFRLLFEGNPMPMWVYDRETLKFLHVNQAAIDHYGYRLEQFLTMTLRDIQAPQD--- 444

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQ 566
            +     +   +              +   + + +    L         + + D++E K+
Sbjct: 445 ADRATAAVFDAEDPAATTCSFRHLKADGGAIEVTVYSTCLNHKGKAASLMAVVDVTEAKR 504

Query: 567 EK-------------------------NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
            +                          +L    +  ++ +  +  F++  SHE RTPL 
Sbjct: 505 AEKALLQHRDTLEEMVRSRTVELARQTEELERMLEQEKQINELQRQFVSMASHEFRTPLA 564

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
            I G ++ +  ++          E A+ I  S + +L+++  +L   +++ G++ +  +P
Sbjct: 565 VIDGAAQRLIRRK-EAATPEFLAEKADQIRSSVSRMLELMESILAAGRLDHGRITIVPKP 623

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
            S+ E +    +  +  +  +              I  D  ++ Q+  N+ SNA+ + P 
Sbjct: 624 CSIAEIIETCSA--RQESIRRSHRFLLKLDELPETIYGDRPALDQVFSNLFSNAVKYAPD 681

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
              + +S      E V + VRD G+G+   +L K  + + +  +S  I   GTG+GL L 
Sbjct: 682 SPNVHVS-GWQEGERVCITVRDEGIGIDADDLPKMFQRYFRARSSTGIA--GTGIGLNLV 738

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           K +V+ + G   + S+   GT   +  P+
Sbjct: 739 KQIVELHGGTIDVASSRGNGTTFTLRIPI 767



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 42/402 (10%), Positives = 105/402 (26%), Gaps = 37/402 (9%)

Query: 90  DAHGYLKEISEELPKTIGNYAF--------KMIGMRLCDVSDILHIDPNNHIGDLLKR-- 139
           D  G L   +    +  G            + I     DV  +     ++++   +    
Sbjct: 145 DEDGRLLLSNNRYAEVYGLDPAVIHPGQSLEDILKLREDVGAVPATSTSDYLAWAVATNM 204

Query: 140 QNTWYGKTTLWP----IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA 195
            +              I G +   P            + +  F    +   +        
Sbjct: 205 GDAPQDWIKELKTGQIIRGYHQRTPEGGWVSTHEDITQAW--FAEKALAEAHAQAERAEQ 262

Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV-- 253
             +    +     E+      +   +            L  ++    +            
Sbjct: 263 EARAAHARLLAAFEVVPEGLVLFDAEDRFVLWNRRYEQLYAESGDMLVKGMRFEDRLRTG 322

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINL----NQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
           L+  +YP     E    E+   H         Q      +  ++         +  R   
Sbjct: 323 LECGQYPEAVGREQEWLEERLAHHAEPTSKHEQRLPGNRWIRIEERRISEGGSVGIRVDI 382

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYSHGNL--FYANPSFLLLTKYK-------SVDDI 360
           +     +    L     +  P+P +VY    L   + N + +    Y+       ++ DI
Sbjct: 383 TDLKMQEASFRL---LFEGNPMPMWVYDRETLKFLHVNQAAIDHYGYRLEQFLTMTLRDI 439

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYR--SDRTCIAASARLHTIQWNRENSLAMTFIPF 418
           +          A   +++ A          +D   I  +     +    + +  M  +  
Sbjct: 440 QAPQDADRATAAVFDAEDPAATTCSFRHLKADGGAIEVTVYSTCLNHKGKAASLMAVVDV 499

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
            +A +  + + Q+    E++       ++  +  +L  +LE 
Sbjct: 500 TEAKRAEKALLQHRDTLEEMVRSRTV-ELARQTEELERMLEQ 540



 Score = 46.2 bits (108), Expect = 0.023,   Method: Composition-based stats.
 Identities = 25/281 (8%), Positives = 65/281 (23%), Gaps = 22/281 (7%)

Query: 71  ENTFVFDPIPRTVRFTWNIDAH-GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP 129
           E +F        +   W  D        +++      G    + + M L D+      D 
Sbjct: 389 EASFRLLFEGNPMP-MWVYDRETLKFLHVNQAAIDHYGYRLEQFLTMTLRDIQAP--QDA 445

Query: 130 NNHIGDLLKRQNTWYGKT--TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187
           +     +   ++             +G  + V +    L    +           +V V 
Sbjct: 446 DRATAAVFDAEDPAATTCSFRHLKADGGAIEVTVYSTCLNHKGKAASLM-----AVVDVT 500

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ------SPPPHLRMKNKVS 241
                 +AL +  D     +       +   +E   +  Q+               ++  
Sbjct: 501 EAKRAEKALLQHRDTLEEMVRSRTVELARQTEELERMLEQEKQINELQRQFVSMASHEFR 560

Query: 242 SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301
           +           L   K        +   +Q       + +  +        ++ + +  
Sbjct: 561 TPLAVIDGAAQRLIRRKEAATPEFLAEKADQIRSSVSRMLELMESILAAGRLDHGRITIV 620

Query: 302 YLSHRNHP-----SLSAYFDEGENLTPETVDKCPIPFFVYS 337
                        S         +     +D+ P   +   
Sbjct: 621 PKPCSIAEIIETCSARQESIRRSHRFLLKLDELPETIYGDR 661


>gi|260223358|emb|CBA33843.1| hypothetical protein Csp_B21070 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 538

 Score =  280 bits (717), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 77/256 (30%), Positives = 131/256 (51%), Gaps = 14/256 (5%)

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
           + D++       +L  A   AE  +  KS FLA +SHE+RTP   ++G   ++++     
Sbjct: 111 LEDLTH------ELREAHFRAEAANRGKSQFLANMSHELRTPFNGMLGMMSLLESTPLTT 164

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
                  +Y      S N +L ++ND+LD+S +ESGKM L+ EPV L   ++E  +L+  
Sbjct: 165 A----QTDYIKTAKGSANHLLTLLNDILDVSALESGKMTLNPEPVQLPALLNEVNALMHP 220

Query: 678 YANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNE 735
            A EK++         +P  +LAD   +KQI  N+++NA+ FT  GG  + I +   ++ 
Sbjct: 221 LAVEKQLKFSIVVQAELPAWVLADATRLKQILFNLVNNALKFTDHGGVTLTIVSRPRTDG 280

Query: 736 E--VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
              +   V DTG+GM ++ L +  + F Q+      +  GTGLGL +++ +     G   
Sbjct: 281 NTGLAFLVEDTGIGMDDHVLSRLFQRFYQVDGGLARKFGGTGLGLEISQTLARMMGGAIE 340

Query: 794 IFSTPAKGTLIEIIFP 809
           + ST  KG++  +  P
Sbjct: 341 VESTLGKGSVFTLHLP 356


>gi|253574616|ref|ZP_04851957.1| PAS sensor protein [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251846321|gb|EES74328.1| PAS sensor protein [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 565

 Score =  280 bits (717), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 83/373 (22%), Positives = 166/373 (44%), Gaps = 35/373 (9%)

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
            E  +L  +++A   GI +++++G I+S N    +L+    ++    P     E      
Sbjct: 218 REAEKLQQMMDAAPLGIVLLDQQGYIISINETFLQLYRTYQKE----PNESRREDLLLRR 273

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTK-------EEKLLSLRIIIKKLPFSS---CYSLTM 558
           ++  L+ +    +   +E+   G TK       +  +        +   S+        +
Sbjct: 274 LSDVLSGVPIESIASRVEQSLEGQTKVTDLIKADNHIYFTSTSPIQKSKSNEVIGAVAIV 333

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            DI+E +  + +L+H +++     S      A ++HEIR P+  + GF ++++ +    L
Sbjct: 334 QDITELETLRMELNHVERL-----SLVGQMAAGITHEIRNPMAVVRGFLQLMREKSPPTL 388

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
            +     Y   +    +    I+ND L +++       +  E   L + + E   L+   
Sbjct: 389 DH-----YYRIVMEELDRANGIINDFLSLAQ----NRPVESEKCHLHDIIKELTPLLWAD 439

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738
           AN +   I     +++P +L + + +KQ+ LN+  NA+      GQ+ + T  T    ++
Sbjct: 440 ANLRGQTIEVKLDDSMPELLLNAKEIKQLILNLSRNAMEAMAEKGQLTLETRVTDQGGLL 499

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           + V DTG G+ + + EK  +PF           +GTGLGL L  ++V+ + GK  + ST 
Sbjct: 500 V-VSDTGPGIPSGQREKLFEPFFTTKA------KGTGLGLALCLSIVERHGGKITVDSTE 552

Query: 799 AKGTLIEIIFPLY 811
            +GT   ++FPL 
Sbjct: 553 GQGTTFTVLFPLS 565


>gi|270159474|ref|ZP_06188130.1| sensory box histidine kinase/response regulator [Legionella
           longbeachae D-4968]
 gi|289165724|ref|YP_003455862.1| sensory box sensor histidine kinase/response regulator [Legionella
           longbeachae NSW150]
 gi|269987813|gb|EEZ94068.1| sensory box histidine kinase/response regulator [Legionella
           longbeachae D-4968]
 gi|288858897|emb|CBJ12819.1| putative sensory box sensor histidine kinase/response regulator
           [Legionella longbeachae NSW150]
          Length = 556

 Score =  280 bits (717), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 84/379 (22%), Positives = 166/379 (43%), Gaps = 11/379 (2%)

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRKPF 497
           +    K +++       +I+      +  +++  + L  N   +K       +DI+ K  
Sbjct: 30  ERSKFKNELQAIHEYYDNIIALMPGHVYWLDKNNVFLGCNDLQAKNAQLKSRKDIVGKTN 89

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-CYSL 556
                ++    +N     ++   +  T E+  + +       S ++ ++           
Sbjct: 90  FDMPWRDQAEELNKVNQLVMETGIPHTAEEYAVMANGMGIYYSQKVPLRNQKNEVIGVLG 149

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
              DI+E K+ +  L  AK+ AE  +  K++F+A +SH+I TPL+ I+G S++++ +   
Sbjct: 150 ISLDITERKKMEVALRRAKENAEVANQAKNEFIANMSHDIHTPLSGIVGMSKLLEEKE-- 207

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES-GKMNLHFEPVSLDEAVSEAISLV 675
              NP   +YA +I  SG  +L+++N ++DI   +S  + ++H E   L + + +   LV
Sbjct: 208 --QNPERKQYARWIHESGEQLLELLNGVMDIVATDSLREDDVHEELFELRKNIQDIAHLV 265

Query: 676 QLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTS 733
           Q     K+I +       +P  I+ D   + ++ LN++ NAI FT +G   I +      
Sbjct: 266 QPTLQMKKIKLNIEIDEAVPNTIITDATKIHRVLLNLVGNAIKFTDNGSVTIKVEVLSLE 325

Query: 734 NEE--VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
           N    +   V DTG+G+      K    F +   S +    G G+GL +A+  +    G+
Sbjct: 326 NNYTQLRFSVIDTGIGIPAELQSKIFDRFFRAIPSYKSTHSGYGVGLHIAQKYLSLLGGE 385

Query: 792 FYIFSTPAKGTLIEIIFPL 810
             + S   KG+       L
Sbjct: 386 INLESEIGKGSTFYFTLTL 404


>gi|167647260|ref|YP_001684923.1| PAS/PAC sensor hybrid histidine kinase [Caulobacter sp. K31]
 gi|167349690|gb|ABZ72425.1| PAS/PAC sensor hybrid histidine kinase [Caulobacter sp. K31]
          Length = 922

 Score =  280 bits (717), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 107/764 (14%), Positives = 228/764 (29%), Gaps = 81/764 (10%)

Query: 95  LKEISEELPKTIGNYAFKMIGMR---LCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151
           +  ++       G  A + IG     L DV+  +  D  + I + L R            
Sbjct: 52  IVYVNAAFETLTGYSAREAIGRNCRFLQDVA--VDRDTVSRIAEALARDGAAAADILNRR 109

Query: 152 IEGTNLYVPIDLAALPIYSRNRE----------FSG-FRGFGIVHVNRVDNDPRALGKRL 200
            + T       L    +   +             +G +    +V   RV     A  +  
Sbjct: 110 RDETPF--WNRLNITTLRDDSGAAVYRFATQVDVTGEYADEIVVEHLRVSRQRLAEAQER 167

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSP-----PPHLRMKNKVSSLTEYYAHKDDVLK 255
            +    +                +   +        P    K   +S      H DD L+
Sbjct: 168 LRVAQAIAGAAGAWEWDIAAGTLVADVRFANLYGLDPVAAAKGLPTSTFFAPVHPDDRLR 227

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
            +         + +  ++     +   +       T  +   +   +       +     
Sbjct: 228 LKIAVSGALHGAEVFARDYRVMRDGVVHWVSARGRTYLDAQDQPVRFSGVLADITDQKRV 287

Query: 316 DEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
           +E   +         +  F Y  G      +  F  L    +   +              
Sbjct: 288 EEQLLMAQT---AGGVGSFEYLSGYGTADVSEQFCRLLGLHAATSLP---------VRTI 335

Query: 375 LSDNNAIKPVMLYRSDRTC-IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
            +  +   P+++   D       +     I               E        +   G+
Sbjct: 336 NALVHPDDPLIIQGRDGQHAFGPAFHEFRIHRADNGEERWLASRGEYRPHGAGGVSFIGV 395

Query: 434 EPEDVDTRINKRKMEIEVMQLC-----------SILEATSDGIAIINREGIILSTNRAVS 482
             +   T+ ++ ++ +    L             +   + D + +I  +G+  + N A  
Sbjct: 396 IYDITSTKHSEEQLRMLTETLEVRVAARTQERDRVWNLSRDLLHVIGPDGLYRAANPAWK 455

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
            L GY   D++       +  +           ++        +       K+   L + 
Sbjct: 456 TLLGYDQADLVGAAAGSLVHPDDREAALERF--VILSRGEPMDDFDCRMRAKDGTYLWVN 513

Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
                +           D+++ K  +++L  ++K+              ++H+    LT 
Sbjct: 514 WTA--MSEGDAIYGIGRDVTQRKALEDQLRQSQKM-----EAVGQLTGGLAHDFNNMLTG 566

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           I+G  + +  +R           + +   +SG     + + LL  S+    +  L   P+
Sbjct: 567 ILGGID-MARRRIAEGRVGDVDRFLDAAMQSGQRAAALTHRLLAFSR----RQTLDNRPL 621

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
            +         L++     +++ +R   A ++   +AD   ++   LN+  NA    P G
Sbjct: 622 DVGALTVSMEDLLR-RTLGEQVSLRIDVAPDLWAAVADDNQLESAILNLGINARDAMPDG 680

Query: 723 GQIIISTT--------------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
           G++II+                  + + V + V DTG GM    LEK   PF        
Sbjct: 681 GELIIAARNVHLADWELASSDHAEAGDYVAISVTDTGTGMPPEVLEKVFDPFYTTKPL-- 738

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
             G+GTGLGL +    +  + G   I S   +GT I++  P + 
Sbjct: 739 --GQGTGLGLSMIYGFIQQSRGHVVIDSEEGRGTTIQLFLPRHQ 780


>gi|300865283|ref|ZP_07110097.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
 gi|300336756|emb|CBN55247.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
          Length = 498

 Score =  280 bits (717), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 72/405 (17%), Positives = 166/405 (40%), Gaps = 28/405 (6%)

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII----N 469
              PF+          Q  ++            ++     + SIL ++ DGIA      N
Sbjct: 109 ITKPFQVEEVLARIDTQIALQKLQNKLEEQNALLQQSQSLIASILNSSLDGIAAFATVRN 168

Query: 470 REGIIL-----STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
           +E  I+       N +V  +     E+++ K     +  +  + +      ++       
Sbjct: 169 QERKIVDFQWILVNHSVEAILDLKSEELVGKYLLEEMPLHRKNGLFDLYVSVVETGEP-- 226

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
           L+       ++     L+I+  KL     +++T H+I+  KQ + +L+       + ++ 
Sbjct: 227 LDTEFYYEQEKLSPCWLQIVAVKLND--GFAVTFHNITARKQAEEELA-------RSNAE 277

Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
              F    SH+++ PL+ I  +++ +   R+    +   +++   + +    +  +++DL
Sbjct: 278 LEQFAYVASHDLQAPLSTIASYAQ-LLEGRYRDKIDANAMKFIQKMIKGSVRMQSLIDDL 336

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704
           L+ S++   K +  FEP   ++   EA   + L   + +  +      ++P ++ D   +
Sbjct: 337 LEYSRV--SKKSKDFEPTDCNQIFEEACGNLHLAIRKNQATVSRC---DLPTVIGDCSQM 391

Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764
            Q+  N++ NAI +      II         + +  V D G+G+ +   E+  + F ++ 
Sbjct: 392 VQVFQNLIGNAIKYRRDEPPIIHLNAERRETDWLFSVSDNGIGIDSKHSERIFQIFQRLH 451

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
              Q    GTG+GL + + +V+ + G+ ++ S    G +     P
Sbjct: 452 --TQEEYTGTGIGLAICQKIVERHGGQIWVESQLGAGAIFYFTLP 494


>gi|291571832|dbj|BAI94104.1| two-component sensor histidine kinase [Arthrospira platensis
           NIES-39]
          Length = 860

 Score =  280 bits (717), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 105/801 (13%), Positives = 240/801 (29%), Gaps = 100/801 (12%)

Query: 82  TVRFTWNIDAHGYLKEISEELPKTIGNYAF-KMIGMRLCDV-SDILHIDPNNHIGDLLKR 139
                W  D        + +  +  G     +++G    D+            +   +  
Sbjct: 86  PQAIFWK-DCDSVYLGCNRQFAEKAGLQHPREIVGKTDHDLPWTPQEAKLYQELDRQVMS 144

Query: 140 QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199
             +   K        T   + ++   +P+ +      G  G           D     + 
Sbjct: 145 SKSPQIKLRGTRHLVTGAEILVETTKIPLDNHQGNIVGLLGI-----LDDIGDRLQQEEL 199

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP--PHLRMKNKVSSLTEYYAHKDDVLKTE 257
           L ++ + +     G +    +    +  ++            +   T    + +D ++  
Sbjct: 200 LKQRLAAIEAGTDGIALQTSQGVFTYVNRAYLEMFGYSKTEDILGKTWQELYDEDEIEYI 259

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
           +  +          + ++     ++     +F    + +K     +      +     + 
Sbjct: 260 QREVSPV----FAAENEWQGELRSRRQDGSFFIQEMSLTKSVAGVVCICRDVTDRKQAEA 315

Query: 318 GENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIA-GGLSTLLDAPKL 375
              L  + V+       +     N FY NP+F  +   ++ ++     GG+S     P++
Sbjct: 316 TLMLYKQAVESSSDAIAMADAQWNHFYQNPAFSEMFGCETPEEFNQVFGGISGAYTDPQI 375

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
                 +                     +        +        +     +       
Sbjct: 376 PAQIFAEISQGKNWVGEVEH--------RAKNNRVFQVLLRASAIKDGQGNILGAVASLT 427

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILR 494
           +    +  +  +      L    E    G   ++ E G I   +  V ++ G   +  L 
Sbjct: 428 DITARKKAEANLREITSDLQEAQELAHIGNWELDLETGEIT-WSDEVFRILGL--DQTLG 484

Query: 495 KP----FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
            P               ++   L E  +      +E   L        + ++        
Sbjct: 485 MPSVDECLQCYHPEDRPLIEKALAETRNNGTACQVEARILRDDNSVSYVHVKFKAILNHD 544

Query: 551 SSCY--SLTMHDISEWKQEKNKLSHAKKIAEKE----------------SSHKSDFLARV 592
           +       T+ DI+E K+ +  L    +  EK                  S     +A V
Sbjct: 545 NQIVSLFGTIMDITERKRAEIHLQQQTEKLEKALVKLKRTQTQLIQSEKMSGLGQMVAGV 604

Query: 593 SHEIRTPLTAIIGFSEVIKN-QRFGPLGNPRYIEY------------------------- 626
           +HEI  P+  I+G    ++   +   L    Y +Y                         
Sbjct: 605 AHEINNPVGFIVGNVSHLEEYTQDLLLLIESYRQYYTEPPLAITELIEEIDLNFLITDIP 664

Query: 627 --ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA----N 680
              N I      + +IVN L   S++   ++      V + + +   + +++        
Sbjct: 665 QLINSIQNGARRIQEIVNSLQTFSRLNESEIK----EVDIHQGIDSTLMILKSRLRLLPK 720

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF--------TPSGGQIIISTTHT 732
           ++ I++  ++  ++P+I      + Q+ L+I +NAI          +     + I+T   
Sbjct: 721 QREIMVIKNY-GDLPKIECYAGQINQVFLHIFNNAIDALKNPASQESSKQPTLTITTGLH 779

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM-VDANMGK 791
            N+   +R+ D GVG+      +   PF          G+GTGLGL ++  + VD + GK
Sbjct: 780 KNKLAFIRIADNGVGIPEELRSRIFDPFFTTKP----VGQGTGLGLSVSYQIVVDLHKGK 835

Query: 792 FYIFSTPAKGTLIEIIFPLYD 812
               S    G+   I  P+++
Sbjct: 836 LNCTSEMGMGSEFCIQIPIHN 856



 Score = 47.7 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/134 (11%), Positives = 37/134 (27%), Gaps = 5/134 (3%)

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRKPFTVFLEQNTPSVMNHY 512
           L  +++     I   + + + L  NR  ++  G     +I+ K           + +   
Sbjct: 78  LQMVIDYVPQAIFWKDCDSVYLGCNRQFAEKAGLQHPREIVGKTDHDLPWTPQEAKLYQE 137

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEK 568
           L   +       ++            + +      L             + DI +  Q++
Sbjct: 138 LDRQVMSSKSPQIKLRGTRHLVTGAEILVETTKIPLDNHQGNIVGLLGILDDIGDRLQQE 197

Query: 569 NKLSHAKKIAEKES 582
             L       E  +
Sbjct: 198 ELLKQRLAAIEAGT 211


>gi|332142241|ref|YP_004427979.1| sensory box histidine kinase/response regulator [Alteromonas
           macleodii str. 'Deep ecotype']
 gi|327552263|gb|AEA98981.1| sensory box histidine kinase/response regulator [Alteromonas
           macleodii str. 'Deep ecotype']
          Length = 1070

 Score =  280 bits (717), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 77/247 (31%), Positives = 128/247 (51%), Gaps = 9/247 (3%)

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           +Q++  L    +   K +  KSDFLAR+SHEIRTPL AIIG +  +  +      +    
Sbjct: 414 RQQRKTLDTLTQDLRKATKAKSDFLARMSHEIRTPLNAIIGLT-KLSQR---AAEDKEQQ 469

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
                I+ +   +L I+ND+LD SKIE+GK+++     +LD  V++ I L    A EK I
Sbjct: 470 TNLIQIEGASQTLLSIINDILDFSKIEAGKLDIESTQFNLDALVNQTIRLHLARAQEKHI 529

Query: 685 LIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT---SNEEVILR 740
            +    + ++P  ++ D   ++Q+  N+LSNA+ FT  G  I +S        + ++   
Sbjct: 530 ELIQHISRDVPLNLIGDPLRIQQVLNNLLSNALKFTEDG-LISVSVRCEQVSEDIQLEFE 588

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V+D+GVG+++       +PF Q   +   R  GTGLGL + K +     G+ ++ S   K
Sbjct: 589 VKDSGVGLSSAHQALLFQPFNQGDETISRRYGGTGLGLAICKQLTALMGGEIWVESQLGK 648

Query: 801 GTLIEII 807
           G++    
Sbjct: 649 GSIFHFT 655


>gi|320161971|ref|YP_004175196.1| putative two-component sensor histidine kinase [Anaerolinea
            thermophila UNI-1]
 gi|319995825|dbj|BAJ64596.1| putative two-component sensor histidine kinase [Anaerolinea
            thermophila UNI-1]
          Length = 1349

 Score =  280 bits (717), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 105/690 (15%), Positives = 223/690 (32%), Gaps = 71/690 (10%)

Query: 192  DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD 251
            +        + K     +  +      +                +      +  Y A   
Sbjct: 663  EQDERISAKENKPVPAGQALEQEVIRLQRAIRTDDYNREVQRRGVGEPRPGVFAYLAVPL 722

Query: 252  DVLKTEKYPLL----TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
            +        L            PEQE+      NQ         L   ++     L+  N
Sbjct: 723  NTGARTIGALSLFSKDPRVEYTPEQENLAQSIANQVAGAIVKARLLEETERRALQLTTLN 782

Query: 308  HPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLL------------TKYK 355
              +             + + +  +       G+L   + +   L               +
Sbjct: 783  EMTRQLTSTLELEPLLQNILRSAVDILSCDAGSLLLIDEATEELVFRVVVSPVANTLLNR 842

Query: 356  SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ----------- 404
             +   +   G +     P + ++ +  P    ++DR     +  L  I            
Sbjct: 843  RLPPGKGVVGQAVKSRQPIIVNDVSKYPEWFSQTDRQTGYFTHALLAIPLMVKDKVIGVI 902

Query: 405  -----WNRENSL-----AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
                  +           ++    + A            +    +       M+    +L
Sbjct: 903  EVINKKDGSAFTRDDQDLLSAFAAQAAVAIENARLYTMTDQALAERVEELSIMQRIDREL 962

Query: 455  CSILEATSDG-----------------IAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
             + L+ T                    I I+   G+ +  ++  +             P 
Sbjct: 963  NTSLDTTRAMRTTLEWAMRRSGAQAGLIGILQENGLRIMASQGYAD--ELEPFQNAPLPL 1020

Query: 498  TVFLEQNTPSVMNHYLTEILSLDLRQTLE------KITLGSTKEEKLLSLRIIIKKLPFS 551
              +               +   D  + L        I +        + L         S
Sbjct: 1021 EQYNLDEALQEAVPMRRSLTEEDGARLLRSARSQILIPIRRETNTIGVILLESTSPEQAS 1080

Query: 552  SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
                  +  +S+        +   +  +  +  KS+F++ V+HE++ P+T++ G++E++ 
Sbjct: 1081 EEIMDFLSRLSDHASIAIFNAQLYQAVQNANLAKSEFVSFVAHELKNPMTSVKGYTELLA 1140

Query: 612  NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
                GP+ N     + N I  +   +  +V+DL D+SKIE G++ L F+ VSL E V   
Sbjct: 1141 AGAVGPV-NEAQANFLNTIRANIERMNTLVSDLNDLSKIEVGRLRLEFKAVSLAEVVEGV 1199

Query: 672  ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
            +   +   +EK+  +  +   ++P   AD   ++Q+ +N++SNA  +TP GG I+++   
Sbjct: 1200 VRSTRRQIDEKKQTLEIAIPADLPPAWADRTRLEQVLVNLVSNAHKYTPQGGHILVAAER 1259

Query: 732  TSNEE--------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
              N          + + V+D G+G++  + +K  + F +  + +     GTGLGL + K+
Sbjct: 1260 AKNVWNPEGVPEVIHVWVKDDGIGISEEDQKKIFQKFFRSEDPKTREVPGTGLGLNITKS 1319

Query: 784  MVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
            +V+   G  +  S   KGT      P+   
Sbjct: 1320 LVEMQGGNIWFESEFRKGTTFHFTVPISQQ 1349


>gi|167588844|ref|ZP_02381232.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ubonensis Bu]
          Length = 496

 Score =  280 bits (717), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 90/348 (25%), Positives = 162/348 (46%), Gaps = 15/348 (4%)

Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
           +   + +G +   N       G  +E    + +  FL  +   +     T  +   +   
Sbjct: 1   MWTADPDGWVDYMNCRGLGYGGVTLEQAQAQGWESFLHPDDLQLAIDTWTRAIQSGVEFE 60

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEK 580
           +E        +                      +  T  DI + KQ        +  AE+
Sbjct: 61  IEYRLR-RACDGAYRWFLCRALPFRDRDGKIVKWFGTETDIEDLKQA-------RAAAER 112

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            +  KSDFL+ +SHE+R+PL AI+GF++++ +    P   P      + I R+G  +L++
Sbjct: 113 ANRAKSDFLSSMSHELRSPLNAILGFAQLMASDL--PPPTPSQQASIDQILRAGWHLLEL 170

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILAD 700
           +ND+LD++KIESG++ +  EPVSL +A+ E  S+++  A ++ I +      +   + AD
Sbjct: 171 INDVLDLAKIESGQVAISPEPVSLRDALRECESMIEPQARQRGIRVSFPEVESHCHVRAD 230

Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760
               +QI LN+LSNAI +    G + +     +   + + VRDTG+G++  +L +  +PF
Sbjct: 231 RTRFRQILLNLLSNAIKYNRPSGAVDVDCDLRAPGRIRVSVRDTGLGLSQEQLGQLFQPF 290

Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            ++        EGTG+GL +AK + +   G     ST  KG++  I  
Sbjct: 291 NRL-GQDAGAEEGTGIGLVVAKRLTELMGGAIGADSTVGKGSVFWIEL 337



 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/226 (10%), Positives = 50/226 (22%), Gaps = 15/226 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID-PNNHIGDLLKRQNTWY 144
            W  D  G++  ++       G    +              +    +     ++    + 
Sbjct: 1   MWTADPDGWVDYMNCRGLGYGGVTLEQAQAQGWESFLHPDDLQLAIDTWTRAIQSGVEFE 60

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
                        Y      ALP   R+ +    + FG                      
Sbjct: 61  -IEYRLRRACDGAYRWFLCRALPFRDRDGKIV--KWFGTETDIEDLKQA-------RAAA 110

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
              +  K    S    +              M + +   T       D +    + LL  
Sbjct: 111 ERANRAKSDFLSSMSHELRSPLNAILGFAQLMASDLPPPTPSQQASIDQILRAGWHLL-- 168

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310
               + +  D   I   Q        +L++  +E    +  +    
Sbjct: 169 --ELINDVLDLAKIESGQVAISPEPVSLRDALRECESMIEPQARQR 212


>gi|329115712|ref|ZP_08244429.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Streptococcus parauberis NCFD 2020]
 gi|326906117|gb|EGE53031.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Streptococcus parauberis NCFD 2020]
          Length = 445

 Score =  280 bits (717), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 79/377 (20%), Positives = 170/377 (45%), Gaps = 34/377 (9%)

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
              T   K  ++     L ++L   + G+ +++R+  I+  +++       P      K 
Sbjct: 89  RNQTEQQKASIKGMSENLQALLSHLTMGMFLVDRKKNIVIHSKS------LPNYFPDTKI 142

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCY 554
               L+  + + +   + +       +T++K   G  + + +L + ++     +  +   
Sbjct: 143 DFKVLDDISRTDIKSLVKQTFLS--TKTIKKELRGFHEGDLILEVTVVPILNDVQETEQV 200

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
            + ++D++  +  +                  DF++  SHE+RTP+T+I GF+E IK+  
Sbjct: 201 LVLLYDLTMIRNYE--------------KLNMDFISNASHELRTPVTSIKGFAETIKSMP 246

Query: 615 FGPLGNPRY--IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
                +      E+ + I      +  IV  +L +SK+   K  L    + L+E +    
Sbjct: 247 ----QDEEVLKKEFLDIIYNESLRLEHIVEHMLTLSKV--KKTQLQKTDIDLNEFLQYIG 300

Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
           + ++    +K + ++     N+  I +D   + QI LN+LSNAI +T  GG I++ T   
Sbjct: 301 NSLKHQLQQKHLHLKYDLEANVI-IESDKYLLSQIILNLLSNAIRYTEDGGDIMVITR-E 358

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
           + + + + V+DTG+G++  E+E+  + F ++   +  +  GTGLGL + K +     GK 
Sbjct: 359 TKDNITICVKDTGIGISQLEIERIFERFYRVNKGRSRQSGGTGLGLSIVKELSQILSGKI 418

Query: 793 YIFSTPAKGTLIEIIFP 809
            + S   +G++  +  P
Sbjct: 419 SVSSQLGQGSIFTLTLP 435


>gi|313109380|ref|ZP_07795342.1| putative two-component sensor [Pseudomonas aeruginosa 39016]
 gi|310881844|gb|EFQ40438.1| putative two-component sensor [Pseudomonas aeruginosa 39016]
          Length = 1212

 Score =  280 bits (717), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 107/604 (17%), Positives = 227/604 (37%), Gaps = 26/604 (4%)

Query: 225 FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYT 284
              Q  P       ++  L    A    + ++ K   +     S            +   
Sbjct: 336 LHFQVTPRSGGFPEQIGVLARKEADLAIMSRSSKREEMLRFTRSFLSTSYVLVTRADDKG 395

Query: 285 KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY- 343
           + +  G+L                     Y           +D   +  +          
Sbjct: 396 RAESPGSLDGKRIAIPAG-HVGMQQVRERYPQASMVEVGVALDAMNL-VYEGRADAAVVP 453

Query: 344 -ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT 402
                + ++  ++    I     +        +   +A    +L ++  +          
Sbjct: 454 LVTARYYIVRLFRERLAIADLVPIGAATAHFAVRRGDAELQSILDKALLSISPDDLSDIV 513

Query: 403 IQWNRENS----LAMTFIPFEKANQFPENMPQNGIEPEDV-------DTRINKRKMEIEV 451
            +W           + +I                                  ++ +  ++
Sbjct: 514 NRWRSPPGMSGQTWVDYILVITEILAIAAALLLFCLGWVTYQRRQIRARARVEQALSDQL 573

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
             + ++ +     + + +  G +LS NR+  +  G   E+++ +       +N  +    
Sbjct: 574 RFVEALTDCMPPPLYVRDVNGRMLSCNRSYLQSVGLSSEEVMNRTVLELPMENFETAPEF 633

Query: 512 YLTEILSLDLRQTLEKIT-LGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEK 568
           + + ++++   +T+E +  +     E+ +   I   +              DI+E +Q  
Sbjct: 634 HRSYLMAMREGRTIEAVYPVALGGRERWIDHWIQPFRDSSGTIRGVICGWLDITEHRQLI 693

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
           ++L  AK +A++ S  K+ FLA +SHEIRTP+ A+IG  E+   +      +        
Sbjct: 694 DELEEAKNLADEASRAKTTFLATMSHEIRTPMNAVIGILELALKRAETGRVD---RSSIE 750

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
               S   +L+++ D+LDI++IESG+++L  +  +L E V     + +  A +KR+ +  
Sbjct: 751 IAYASAKSLLELIGDILDIARIESGRLSLSPKRANLRELVESVARVFEGLARQKRLSLVL 810

Query: 689 SFANNI-PRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNE--EVILRVRDT 744
              ++I   +L D    KQI  N++SNAI FT  G  +I I          +V L V DT
Sbjct: 811 EIDSSINGDVLLDAMRFKQILSNLVSNAIKFTDEGSIRIRIDGRQVEPSLLQVNLCVEDT 870

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G++  + ++  +PF Q+  + Q   EGTGLGL +++++ +   G+  + S   +GT I
Sbjct: 871 GIGISLGDQQQLFRPFAQVNRNLQ-NTEGTGLGLVISRSLCEMMGGRLVMSSELGQGTRI 929

Query: 805 EIIF 808
           ++  
Sbjct: 930 DVEL 933



 Score = 48.1 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 64/243 (26%), Gaps = 11/243 (4%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D +G +   +    +++G  + +++   + ++               L           +
Sbjct: 591 DVNGRMLSCNRSYLQSVGLSSEEVMNRTVLELPMENFETAPEFHRSYLMAMREGRTIEAV 650

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFR-GFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           +P+        ID    P    +    G   G+  +  +R   D     K L  + S   
Sbjct: 651 YPVALGGRERWIDHWIQPFRDSSGTIRGVICGWLDITEHRQLIDELEEAKNLADEASRAK 710

Query: 209 EIKKGHSSVE--KEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
                  S E       +              +V   +   A+       E    +    
Sbjct: 711 TTFLATMSHEIRTPMNAVIGILELALKRAETGRVDRSSIEIAYASAKSLLELIGDILDIA 770

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
                +       L+   K+     L  +    FE L+ +   SL    D   N     +
Sbjct: 771 RIESGR-------LSLSPKRANLRELVESVARVFEGLARQKRLSLVLEIDSSING-DVLL 822

Query: 327 DKC 329
           D  
Sbjct: 823 DAM 825


>gi|254524346|ref|ZP_05136401.1| Two component regulator three Y motif family [Stenotrophomonas sp.
            SKA14]
 gi|219721937|gb|EED40462.1| Two component regulator three Y motif family [Stenotrophomonas sp.
            SKA14]
          Length = 1167

 Score =  280 bits (717), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 123/719 (17%), Positives = 240/719 (33%), Gaps = 72/719 (10%)

Query: 143  WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSG---------FRGFGIVHVNRVDNDP 193
            W   +    ++G  L     L+A       R + G          +G   +  +  +   
Sbjct: 326  WRRFSIWNQLDGKPLDSQYLLSAA--SDGQRYYVGSAHGVYQLDAQGTLRLLASDREIGS 383

Query: 194  RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253
             A+   L +    L   + G  SV                  ++ ++  + +     D  
Sbjct: 384  GAVWSVLPRPDGRLWLGRAGRISVYDPASRALQDWRIEGGADLRQRIDLMRQA---PDGT 440

Query: 254  LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ-NNSKESFEYLSHRNHPSLS 312
            +      L   + S+       + ++  +         ++ +   +++           +
Sbjct: 441  VWLSVMNLGLQQRSADGRVLRSYPLDDFRKAADSPIEQIRFDAHGKAWVMGEMGIWREQA 500

Query: 313  AYFDEGENLTPETVDKC----PIPFFVYSHGNLFYANPSFLLLTKYKSVD---------- 358
              F+    ++   +       P   ++   G L       + L   + VD          
Sbjct: 501  GRFEAVPGVSSGLIFDLVWVDPQQLWLARQGALERYQWDGMSLRLIQRVDGSAGVPPVSM 560

Query: 359  ---DIEIAGGLSTLLDAPKLS-DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
                +   G +        L  D  A +  +    D    A               LA+ 
Sbjct: 561  GGLALADDGRVWATTPRGLLRWDPKARRLQLFNERDGLSDAEFTSRPPAVNADGRVLAVA 620

Query: 415  FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINREGI 473
                   +    ++          + R+ +                  D G  ++  +  
Sbjct: 621  QTGLVAFDVNAVDVALPASSLVIAEVRVRRDDARGWQP--------LPDTGTLLLGPDDR 672

Query: 474  ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
             L  +   ++L  Y      R  F V                 LS     +       +T
Sbjct: 673  DLQID---ARLLSYANPQGNRYRFRVRGYDQDWVEQGGDGQRTLSRLPTGSYVIEVQAAT 729

Query: 534  KEEKLLS---LRIIIKKLPFSSCYSLT----------------MHDISEWKQEKNKLSHA 574
                      L++ +    + S  ++                 +      +Q+     H 
Sbjct: 730  ANGAWTPSQQLKVKVLPPWWRSGMAIFGYILIGSLLLLILAWSIRVRLRRRQQWQLTVHK 789

Query: 575  KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
            +++AE+ S  KS FLA + HE+RTP+T ++G SE++      P+       YA  I ++G
Sbjct: 790  QELAEQASQAKSRFLATLGHEVRTPMTGVLGMSELLLATPLDPV----QRSYAGSIQQAG 845

Query: 635  NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
            + +L +VND LD+++IE+G++ L   P  L   + +   L+Q  A ++R+  +       
Sbjct: 846  SHLLRLVNDALDLARIEAGRLELDLRPFDLAGLLDQVQVLMQPMAKQRRLEFQRGNDPQG 905

Query: 695  P-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN-EEVILRVRDTGVGMTNYE 752
            P  +  D   V+QI LN+L NAI FT  G  + ++     N   V   V D+G G+   +
Sbjct: 906  PISVSGDEMRVRQILLNLLGNAIKFTERG-HVGLAVRLEDNGGGVCFEVYDSGPGINAEQ 964

Query: 753  LEKAMKPFGQIPNSQQ-IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             E+    F Q    +   R  G+GLGL + + +  A  G+  + S+P KG    +  PL
Sbjct: 965  QERLFHRFEQADGPRTASRYGGSGLGLAICQELAVAMGGRIDVESSPGKGARFRVRLPL 1023


>gi|153955731|ref|YP_001396496.1| sensor kinase [Clostridium kluyveri DSM 555]
 gi|219856100|ref|YP_002473222.1| hypothetical protein CKR_2757 [Clostridium kluyveri NBRC 12016]
 gi|146348589|gb|EDK35125.1| Predicted sensor kinase [Clostridium kluyveri DSM 555]
 gi|219569824|dbj|BAH07808.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 617

 Score =  280 bits (717), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 75/368 (20%), Positives = 158/368 (42%), Gaps = 14/368 (3%)

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRKPFTVFLEQNTPSVMNHY 512
              + E + + I + +  G I+  N++ S+L G      +  K           S +   
Sbjct: 220 FHMLFEDSVNSIIVHD-NGRIIYANQSASRLLGCEDPLKLNDKSLYDHYRDEDISSIRKK 278

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK--LPFSSCYSLTMHDISEWKQEKNK 570
              I+   L + + +  + + K    +S++                 + D++  KQ ++ 
Sbjct: 279 YINIIDEKLSKIVNEENILNCK-GNTISVKNTSSFFIYDGKPVILTFLLDLTSQKQMESL 337

Query: 571 LSHAKKIAEKESSHKS------DFLARVSHEIRTPLTAIIGFSEVI--KNQRFGPLGNPR 622
            + A+K  +  +  K       DF   +SHE +TP+  I    + +     ++      +
Sbjct: 338 KNTAEKNLKLLNETKEFNTLIMDFFINMSHEFKTPINVIFVAIQTMDIYLNKYDSEDMKK 397

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
              Y   + ++   ++ ++N++ DI++++SG ++L+ + + +   V +    V  + + K
Sbjct: 398 CKSYLKTMKQNCLRLIRLINNITDITRVDSGFISLNKKNMDIVSVVEDITQSVASHIDSK 457

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
            I +          +  D   +++I LN+LSNA  +T S G I ++      + V++ V 
Sbjct: 458 NIELIFDTNTEEKIMAFDPNKMERIMLNLLSNAFKYTNSQGTIYVNVE-DRGDTVLITVE 516

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G G+   +L+   + FGQ   S     EG+G+GL L K+ V  + GK  + S   +G+
Sbjct: 517 DDGDGIPEDKLQVIFERFGQANRSLSREHEGSGVGLYLVKSFVTMHNGKIEVTSVQGRGS 576

Query: 803 LIEIIFPL 810
              I  P+
Sbjct: 577 KFSIELPV 584


>gi|323483203|ref|ZP_08088594.1| hypothetical protein HMPREF9474_00343 [Clostridium symbiosum
           WAL-14163]
 gi|323403476|gb|EGA95783.1| hypothetical protein HMPREF9474_00343 [Clostridium symbiosum
           WAL-14163]
          Length = 748

 Score =  280 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 84/273 (30%), Positives = 136/273 (49%), Gaps = 22/273 (8%)

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           K +  ++  AK+ AE  +  KS FL+ +SH+IRTP+ AIIG +  I  +  G     R  
Sbjct: 340 KGQYLEIIRAKEEAEAANRAKSMFLSNMSHDIRTPMNAIIGMT-RIARENIG--DGERVE 396

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           +    ID S  L+L I+ND+LD+SKIE+ K+ L  E  S+   +     +++  A  K++
Sbjct: 397 DCLKKIDISSRLLLGIINDVLDMSKIEARKVELAREAFSMGAMIDSNRMIMERQAENKQL 456

Query: 685 LIR---TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST-----THTSNEE 736
            +    T+  ++   ++ D   + QI +NILSNA+  TP GG+I         T   +  
Sbjct: 457 TLEFKKTNLNHD--AVVGDSVRLSQIIMNILSNAVKCTPEGGRITFEIIELPCTREDSGR 514

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
               + DTGVGM+    +   +PF Q  +  + R +GTGLG+ + K +V+   G   + S
Sbjct: 515 YRFVISDTGVGMSEEFQKHIFEPFTQENDYGRSRYKGTGLGMAITKKLVELMGGTVEVES 574

Query: 797 TPAKGTLIEI--IFPLYD-------TSHPHDCI 820
              +GT+  +    PL         T  P D +
Sbjct: 575 RQGEGTVFRVELELPLASQEEVQSGTKEPEDSV 607


>gi|255016481|ref|ZP_05288607.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_7]
 gi|298377751|ref|ZP_06987702.1| two-component sensor histidine kinase [Bacteroides sp. 3_1_19]
 gi|298265454|gb|EFI07116.1| two-component sensor histidine kinase [Bacteroides sp. 3_1_19]
          Length = 571

 Score =  280 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 85/394 (21%), Positives = 178/394 (45%), Gaps = 34/394 (8%)

Query: 424 FPENMPQNGIEPEDVD-TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
                  N +     +  +     +      + +I+ + ++ I  ++R+  IL  N    
Sbjct: 201 EGVAKSFNRMAERLTEYRKSTLADIIQGKKYIEAIVNSITEPIIGLDRDRKILFANNEAL 260

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE--EKLLS 540
            +     E+++ K  +        S+ N  L  ++   ++ + +K  L    +  E    
Sbjct: 261 TILNLKRENVIGKSASEL------SLRNDLLRRLVRELIQPSEKKEPLKIYADNKESYFQ 314

Query: 541 LRIIIKKLPFSS------CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
           ++ I  ++  +          + + +I+E+K              +  S K+ F++ +SH
Sbjct: 315 VQYIPIRVLENGEAEVYVGDVILLKNITEFK--------------ELDSAKTTFISTISH 360

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           E++TP++AI+   +++++ R G + N      A  I  S N +L+I ++LL ++++E+GK
Sbjct: 361 ELKTPISAIMMSLKLLEDARVGAM-NDEQKALAESIKESSNRLLEITSELLKMTQVEAGK 419

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714
           + L+ +     E +  AI   Q+ A+     I   +   I ++  D   +  +  N+LSN
Sbjct: 420 LQLNPKITKPIELIEYAIKANQVQADRFNCHIEVEYPEKISKLFVDSEKIAWVLTNLLSN 479

Query: 715 AIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           AIH+TP  G+III      +  V + V+D G G+     +     + ++P +   + +G+
Sbjct: 480 AIHYTPENGRIIIGARQQDH-SVEIYVQDFGKGIDPRYHQSIFDRYFRVPGT---KVQGS 535

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           GLGL ++K  V+A+ G   + S   KG+   I F
Sbjct: 536 GLGLAISKDFVEAHGGTLSVDSAVGKGSTFVIKF 569


>gi|254458661|ref|ZP_05072085.1| Nitrate and nitrite sensing family [Campylobacterales bacterium GD
           1]
 gi|207084427|gb|EDZ61715.1| Nitrate and nitrite sensing family [Campylobacterales bacterium GD
           1]
          Length = 1088

 Score =  280 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 74/251 (29%), Positives = 127/251 (50%), Gaps = 10/251 (3%)

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            ++   +    K+ A++ S  KS FLA +SHEIRTPL  I+GF+E++K+   G       
Sbjct: 384 LEKIIAQTREDKESAQEASEAKSMFLANMSHEIRTPLNGIVGFTELLKDTGLG----EEQ 439

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            E+   I++S   +L+I+N++LD+SKIES K+ +     +  +    A+ +  + A+EK 
Sbjct: 440 HEFVEIIEKSSENLLEIINNILDLSKIESNKLEIEDIVFNPIDEFESAVEVYAVRASEKH 499

Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIII---STTHTSNE--EV 737
           I +       +   +  D   +K+I +N+LSNA+ FT S G I +         +    V
Sbjct: 500 IDLGCFIDPTLEHPLKGDPTKIKEIIINLLSNAVKFTSSAGSINVDIRRVECDQDGKTRV 559

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
              V+D+G+G+T+ +  +  + F Q   S   +  GTGLGL ++   V+   G+  + S 
Sbjct: 560 RFEVQDSGIGVTSEQKSRIFEAFSQADTSITRKYGGTGLGLTISSRFVELMGGELDLHSE 619

Query: 798 PAKGTLIEIIF 808
              GT      
Sbjct: 620 TGSGTTFFFTI 630


>gi|163801557|ref|ZP_02195455.1| putative sensory box sensor histidine kinase/response regulator
           VieS [Vibrio sp. AND4]
 gi|159174474|gb|EDP59276.1| putative sensory box sensor histidine kinase/response regulator
           VieS [Vibrio sp. AND4]
          Length = 1235

 Score =  280 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 89/372 (23%), Positives = 161/372 (43%), Gaps = 13/372 (3%)

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
           E E   L  I++  +  + I   +  I  +N ++     Y  +             +   
Sbjct: 554 EKEKQWLMDIIQEINSIVFIHGEDNQIQMSNCSL-----YRNKRCKGCTIESRHSASPLV 608

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII-KKLPFSSCYSLTMHDISEWKQ 566
                L ++++                 + +   R  I             + DI+E ++
Sbjct: 609 DNAAELQQVIAGKRLSDTTAAKNCKLGIQHVYRERKSILSPSSKKKFVLTIIQDITEQQE 668

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
            +  L  A++ A+     +  FLA +SHE+RTPL+A  G  +++  Q           E 
Sbjct: 669 RELALIVAQERAQTAVRARESFLATMSHELRTPLSAAHGLLDLLTRQADSGNS----KEL 724

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
                RS N +  +V+++LD SK+E+G++ +      +   + + +   +  A  K +  
Sbjct: 725 ITQAMRSLNHLNLLVDEVLDYSKLEAGQLKVTPIQTDVLTTLCDVVRSFEPKAVSKGLDY 784

Query: 687 RTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           R  F   N P +  D   + QIA N+LSNA+ FT  G +I +S   +   ++IL+V DTG
Sbjct: 785 RVLFKPFNTPWLKVDPVRLVQIATNLLSNAVKFTSDG-EINVSVALSER-KLILKVADTG 842

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +GM++ +LE  ++PF Q  ++   +  GTGLGL +   +V    G+ YI S    GT + 
Sbjct: 843 IGMSDTQLEGILQPFVQADDTITRKYGGTGLGLSIVDRLVKCMGGELYIDSQLGLGTTML 902

Query: 806 IIFPLYDTSHPH 817
           +  P+      H
Sbjct: 903 VKLPIVPCEPCH 914


>gi|146340227|ref|YP_001205275.1| sensor histidine kinase [Bradyrhizobium sp. ORS278]
 gi|146193033|emb|CAL77043.1| sensor histidine kinase with multiple PAS and a response regulator
           receiver domain [Bradyrhizobium sp. ORS278]
          Length = 860

 Score =  280 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 97/669 (14%), Positives = 202/669 (30%), Gaps = 60/669 (8%)

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244
              +      A  +R+ +      ++++G  +    +Y I     P              
Sbjct: 75  RALQEREAELARIQRIGRVGGVEVDLREGFRNRRSPEYLIIHGLPPEAANETHEDWVR-- 132

Query: 245 EYYAHKDDVLKTEK---YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301
               H DD  K E+     + + +E    E       +      +      ++ +  +  
Sbjct: 133 --RIHPDDRAKAEQDFIAAVKSKQEDYTTEYRIIRPNDGEIRWIRVIARIERDRNGRAIR 190

Query: 302 YLSHRNHPS----LSAYFDEGENLTPETVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKS 356
            +      +      A   E E       D  P+P +V        + N +++       
Sbjct: 191 LVGAHIDVTDQMLAQAKLRESEERFRLIADSAPVPIWVTKLDRTRSFVNQAYVDFLGLPH 250

Query: 357 VDDIE-------IAGGLSTLLDAPKLSDNNAI---KPVMLYRSDRTCIAASARLHTIQWN 406
            + +            L  +L   +  + +           R D       +     +W+
Sbjct: 251 DEAMAFDWRKVLHPEDLPRILAQQQSGECSLKPFFLEARYRRVDGEWRWLRSESQP-RWD 309

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR--KMEIEVMQLCSILEATSDG 464
                              +   +     E ++ RI +R  ++E    ++ +I + ++  
Sbjct: 310 ANGRHIGFIGVAHDVTAAKQGEIELRRINETLEERIRERTSQLEANEARMRAIFDTSNQY 369

Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
            AI++ EG I   NR           D++ +P          + ++  L +  +  L   
Sbjct: 370 QAILDTEGRITHANRIAVMGMRAGGVDVIGQPLWNAPWFADTTGVSDMLRKAFARVLSGD 429

Query: 525 -LEKITLGSTKEE-KLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEK 580
                         +   L +        +         D++E  Q +  L  ++K+   
Sbjct: 430 SFRTEVRLEFANGDRHFELSMRPLFDQHEAIMGAVAEAVDVTERIQGEELLRQSQKM--- 486

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
                      V+H+    LT I   ++ ++ +    L   R   Y + I  +      +
Sbjct: 487 --EAVGQLTGGVAHDFNNLLTIIRSATDFLRRRD---LPEERRRRYVDAISETVERASKL 541

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILAD 700
              LL  ++    +  L  +  ++ E V   + L++      RI I  +  +     LAD
Sbjct: 542 TGQLLAFAR----RQPLTPQVFNVGEQVESVVQLIRPLV-GSRIHIELAIDDARLFTLAD 596

Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTS------------NEEVILRVRDTGVGM 748
           +   +   +N+  NA       G++ I    T                + + V DTG G+
Sbjct: 597 IAQFQTALINLAVNARDAMNGEGRLTIGVQRTDHIPSLRGQTARPGAFIAISVSDTGAGI 656

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
               +    +PF          G+GTGLGL  A      + G   + S    G    I  
Sbjct: 657 APQNINAIFEPFFTTK----EVGKGTGLGLSQAFGFAKQSEGDIAVDSRLGHGATFTIYL 712

Query: 809 PLYDTSHPH 817
           P    + P 
Sbjct: 713 P--QAAAPQ 719



 Score =  105 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 32/326 (9%), Positives = 87/326 (26%), Gaps = 9/326 (2%)

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
              +LP Q   +  +  +              +   E    R+    +    E E    +
Sbjct: 29  RPLALPVQVSMNRADAPRDEVLPEAAGAAELRQHIEEIARDRDQAYRALQEREAELARIQ 88

Query: 325 TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
            + +          G     +P +L++         E        +     +        
Sbjct: 89  RIGRVGGVEVDLREGFRNRRSPEYLIIHGLPPEAANETHEDWVRRIHPDDRAKAEQDFIA 148

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
            +          +     I+ N      +  I   + ++    +   G   +  D  + +
Sbjct: 149 AVKSKQE---DYTTEYRIIRPNDGEIRWIRVIARIERDRNGRAIRLVGAHIDVTDQMLAQ 205

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            K+     +   I ++    I +   +      N+A     G P ++ +   +   L   
Sbjct: 206 AKLRESEERFRLIADSAPVPIWVTKLDRTRSFVNQAYVDFLGLPHDEAMAFDWRKVLHPE 265

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHD 560
               +     +       +           + +   LR   +    ++     +    HD
Sbjct: 266 DLPRILA--QQQSGECSLKPFFLEARYRRVDGEWRWLRSESQPRWDANGRHIGFIGVAHD 323

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKS 586
           ++  KQ + +L    +  E+    ++
Sbjct: 324 VTAAKQGEIELRRINETLEERIRERT 349



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/417 (7%), Positives = 95/417 (22%), Gaps = 39/417 (9%)

Query: 56  DQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIG 115
           D   + ++     +SE  F        V   W          +++     +G    + + 
Sbjct: 197 DVTDQMLAQAKLRESEERFRLIADSAPVP-IWVTKLDRTRSFVNQAYVDFLGLPHDEAMA 255

Query: 116 MRLCDVSDILHIDPNNHIGDLLKRQN----TWYGKTTLWPIEGTNLYVPIDLAALPIYSR 171
                V     +     I    +        ++ +     ++G   +  +   + P +  
Sbjct: 256 FDWRKVLHPEDL---PRILAQQQSGECSLKPFFLEARYRRVDGE--WRWLRSESQPRWDA 310

Query: 172 NREFSGFRGFGIVHVNRVDNDPRALGKR------------------LDKKFSHLHEIKKG 213
           N    GF   G+ H            +R                   + +   + +    
Sbjct: 311 NGRHIGF--IGVAHDVTAAKQGEIELRRINETLEERIRERTSQLEANEARMRAIFDTSNQ 368

Query: 214 HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ- 272
           + ++   +  I               V  + +   +      T     +  +  +     
Sbjct: 369 YQAILDTEGRITHANRIAVMGMRAGGVDVIGQPLWNAPWFADTTGVSDMLRKAFARVLSG 428

Query: 273 -----EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP--ET 325
                E            +     L +  +     ++     +     +E    +   E 
Sbjct: 429 DSFRTEVRLEFANGDRHFELSMRPLFDQHEAIMGAVAEAVDVTERIQGEELLRQSQKMEA 488

Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
           V +       +   NL     S     + + + +      +  + +  + +     + + 
Sbjct: 489 VGQLTGGVA-HDFNNLLTIIRSATDFLRRRDLPEERRRRYVDAISETVERASKLTGQLLA 547

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             R              ++   +    +            +       +     T +
Sbjct: 548 FARRQPLTPQVFNVGEQVESVVQLIRPLVGSRIHIELAIDDARLFTLADIAQFQTAL 604


>gi|163846840|ref|YP_001634884.1| histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|222524660|ref|YP_002569131.1| integral membrane sensor signal transduction histidine kinase
           [Chloroflexus sp. Y-400-fl]
 gi|163668129|gb|ABY34495.1| Histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|222448539|gb|ACM52805.1| integral membrane sensor signal transduction histidine kinase
           [Chloroflexus sp. Y-400-fl]
          Length = 479

 Score =  280 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 75/230 (32%), Positives = 130/230 (56%), Gaps = 5/230 (2%)

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG---NPRYIEYANYIDRSGNLVLD 639
             KS+F+A +SHE+RTPL  IIGFS  +            + + ++    I RSG  +L 
Sbjct: 243 RSKSNFMATMSHELRTPLNIIIGFSTAMLEHPEMYGDVRIDEQVLQDIAEIRRSGQHLLG 302

Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA 699
           ++ND+LD++K+E+GK+ L+   ++L   + E +   Q   N++ I +R  +   +P + A
Sbjct: 303 LINDILDLAKVEAGKLELNKTNLALGPLLEETLRTAQALINDRPIQLRREYREPLPTVFA 362

Query: 700 DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKP 759
           D   V+Q+ LN++SNA  FT +G +I +        E++L VRDTG+G+   + E+  + 
Sbjct: 363 DEVRVRQVLLNLVSNACKFTHAG-EIAVGARV-DTNEIVLWVRDTGIGIAPADQERIFQQ 420

Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           F QI N+   +  GTGLGL + + +V+ + G+ ++ S   KG++     P
Sbjct: 421 FEQIENADTRQHAGTGLGLSICRWLVELHGGRMWVESELGKGSIFFFSLP 470


>gi|328468861|gb|EGF39821.1| putative histidine kinase [Vibrio parahaemolyticus 10329]
          Length = 1051

 Score =  280 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 78/255 (30%), Positives = 127/255 (49%), Gaps = 10/255 (3%)

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + K     AK  A + S  KS FLA +SHEIRTPL  +IG SEV+ +            +
Sbjct: 376 KAKEDAERAKDDAIEASKAKSSFLANMSHEIRTPLNGVIGISEVLADTPLTAT----QRD 431

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           Y + I+ S  L+L ++ND+LD SKIESG + +      + E++ +  S+V     EK I 
Sbjct: 432 YVDTIETSSQLLLSLINDVLDFSKIESGMLLISPHSTCVRESIYDIASIVSPKVKEKGIE 491

Query: 686 IRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQ---IIISTTHTSNEEVILRV 741
           +  S + N P  I+ D   ++Q+ +N +SNA+ FT  G     I    ++ S   +   V
Sbjct: 492 LTVSISPNTPYHIVIDDHRLRQVIMNFMSNAVKFTERGSVELSITTLESNESEAVIEFSV 551

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
           +D+G+G+   + ++   PF Q  +S   +  GTGLGL ++  +V+   G   + S   +G
Sbjct: 552 QDSGIGIDEQQQKRIFAPFAQEDDSTTRQFGGTGLGLAISTQLVELMGGSIQLESEKGRG 611

Query: 802 TLIEIIF--PLYDTS 814
           +        P+    
Sbjct: 612 SRFYFQLTAPISQAH 626


>gi|262046125|ref|ZP_06019088.1| signal transduction histidine kinase [Lactobacillus crispatus
           MV-3A-US]
 gi|260573455|gb|EEX30012.1| signal transduction histidine kinase [Lactobacillus crispatus
           MV-3A-US]
          Length = 544

 Score =  280 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 80/366 (21%), Positives = 159/366 (43%), Gaps = 40/366 (10%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            ++     +L ++ +A  +G+ +I+ +  IL +N AV  L G    D L       +++N
Sbjct: 207 EQLHHREKELKTVTDAMQEGLILIDLDDWILLSNPAVVSLLGLHDTDPLPDDVKEIIDKN 266

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISE 563
           +       +                    +  + + +              S+ + D++E
Sbjct: 267 SRLAHTEGI------------------VERNGRNIQISASPIISRKILKGTSILVVDVTE 308

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
              E+                + +F A VSHE++TPL +I+G +E+++N     + +   
Sbjct: 309 EYHEEQV--------------RREFTANVSHELKTPLQSIMGSAELLENHL---VKDEDR 351

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
             +   I  S   +L +++D++ +S ++  +       ++L   V+EA+  +Q  A    
Sbjct: 352 DGFYKKIHESSAQLLTLIDDIIRLSHLDENQ-RFEEIKLNLKSPVTEALEALQGSAYRHG 410

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
           I + T+ ++    ILA+ R V +IA N++ N+I +    G+  I+       + IL+V D
Sbjct: 411 IKLETNLSDT--MILANFRLVYEIAYNLIDNSIRYNKEKGKTKITVK-EHRGQAILQVAD 467

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TG+G+      +  + F ++  S   +  GTGLGL + K  V    G   + S   KG+ 
Sbjct: 468 TGIGIPQEAQNRIFERFYRVEKSHSRKTGGTGLGLSIVKHAVQQCHGTIRLESELGKGST 527

Query: 804 IEIIFP 809
             +IFP
Sbjct: 528 FTVIFP 533


>gi|255534129|ref|YP_003094501.1| ATPase [Pedobacter heparinus DSM 2366]
 gi|255347113|gb|ACU06439.1| ATP-binding region ATPase domain protein [Pedobacter heparinus DSM
           2366]
          Length = 1196

 Score =  280 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 85/321 (26%), Positives = 151/321 (47%), Gaps = 24/321 (7%)

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT-----------M 558
              L E L     Q  E        E     L    +++  S                 +
Sbjct: 435 RKKLQEFLEETQAQAEELQAQHRELEGLNAELEAQTQRIQTSEEELRVQQEELLQSNQEL 494

Query: 559 HDISEWKQEKNKLSHAK--------KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
            + +   +EKN+L   +        +  E+ + +KS+FLA +SHE+RTPL +I+  S+++
Sbjct: 495 EERTSLLEEKNQLIQERNLDIQHKAEQLEQSTKYKSEFLANMSHELRTPLNSILLLSKLM 554

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
              +     +  YIEYA  I  SG  +L +++++LD+SKIE+GKM L F  V++ E  ++
Sbjct: 555 SENK---ELDKEYIEYAEVIQSSGQGLLGLIDEILDLSKIEAGKMKLEFTDVNITEVATD 611

Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
             SL    A  K + +     ++I  I  D   ++QI  N+LSNAI FT +G ++ ++  
Sbjct: 612 MRSLFSPLAKNKNLDLVIDVESDISGINTDRMRLEQILKNLLSNAIKFTSTG-KVALTVK 670

Query: 731 HTSNEE-VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
                + ++ +V DTG+G+   +     + F Q   S + +  GTGLGL +++ +     
Sbjct: 671 QDDAGKAILFKVTDTGIGIPLDKQGLIFEAFQQADGSTRRKFGGTGLGLSISRELSKLLG 730

Query: 790 GKFYIFSTPAKGTLIEIIFPL 810
           G+  + S    G+   +  P+
Sbjct: 731 GEIELTSKENVGSEFTLALPV 751


>gi|325263100|ref|ZP_08129835.1| sensor histidine kinase/response regulator [Clostridium sp. D5]
 gi|324031493|gb|EGB92773.1| sensor histidine kinase/response regulator [Clostridium sp. D5]
          Length = 959

 Score =  280 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 109/654 (16%), Positives = 204/654 (31%), Gaps = 49/654 (7%)

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS--LTEYYAHKDDVLKT 256
            L        E ++  ++  +   D          +    ++           +      
Sbjct: 39  WLGGGEKQKAEGREAVAACFRAGRDGMIACDMSEEVYHTMELGGDCYLCEGVSRLRSRPE 98

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA--- 313
            +  L T +  +   +E    +          F  ++++     E          SA   
Sbjct: 99  TEAYLDTVQRVTFVFREKGDGLETVHIHNSVPFAEIKDDELFPVEAGREAFQRLQSALNL 158

Query: 314 ---YFDEGENLTPETVDKCPIPFFVYSH---GNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
               +        +  +  P     +S      +   N        Y S +         
Sbjct: 159 KNKEYSHQAKFLEQLYNTVPCGILQFSTEKEHEVISLNRMTWEFYGYSSEEAYRQE---- 214

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ--WNRENSLAMTFIPFEKANQFP 425
             + +P  +  +     ++   D   +      +             +        +   
Sbjct: 215 --IKSPLQTVQDKDYDWIMSIIDGLELNGEPASYRRHCVKPGGEEAWINVAMGRIVDSNG 272

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEV----MQLCSILEATSDGIAIINREGIILST---N 478
           E +    +  +       +   E E       L + +      I  +N           N
Sbjct: 273 EEV-IQAVFTDITGRVQLEMAQEQERILENRFLRAAIYTVYPLIMSVNLTKNTYKCFVDN 331

Query: 479 RAVSKL-FGYPVEDILRKPFTVFLEQNTPSVM----NHYLTEILSLDLRQTLEKITLGST 533
           +    +       D++ K                     L +      R+       G  
Sbjct: 332 QKEYSIPVKGTYTDLMTKSLPFIYPSYQEDFASIWDREELLKRFENGEREIY-MELKGKG 390

Query: 534 KEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK--------LSHAKKIAEKESSHK 585
            +     L I +  +       +   D+ +    + +        L  A   A+  +  K
Sbjct: 391 LDGVYHWLAIHVIYVENPFNNDVLAIDLVQLLDAQRQEQARQEQLLRDALSSAKAANRAK 450

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
           SDFL+R+SH+IRTP+ AIIG S +    +          +    ID S   +L ++ND+L
Sbjct: 451 SDFLSRMSHDIRTPMNAIIGMSTI---GQLKNEDTKTVKDCFQKIDASSRYLLSLINDIL 507

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSV 704
           D+S+IE+GKM +  E       V E   ++     EK +         +  + + D   +
Sbjct: 508 DMSRIENGKMEIAHEIFDFKAFVDEVNQIIYPQTVEKEVDYDMRCREPLEAQYIGDSLRM 567

Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSN----EEVILRVRDTGVGMTNYELEKAMKPF 760
           KQI +N+LSN++ FTPSGG I I             +   V+DTG+GM++  ++K   PF
Sbjct: 568 KQILMNLLSNSLKFTPSGGYISIDIKEERRTNGFAYMEFVVQDTGIGMSDQFMQKVFLPF 627

Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
            Q          G+GLGL +   +V    G   + S    GT   +  P    S
Sbjct: 628 EQEEPGNARNNVGSGLGLSIVYNLVQLMGGSIQVKSEKNAGTTFIVSVPFQIVS 681


>gi|237808149|ref|YP_002892589.1| Hpt sensor hybrid histidine kinase [Tolumonas auensis DSM 9187]
 gi|237500410|gb|ACQ93003.1| Hpt sensor hybrid histidine kinase [Tolumonas auensis DSM 9187]
          Length = 675

 Score =  280 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 80/333 (24%), Positives = 142/333 (42%), Gaps = 18/333 (5%)

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILS---LDLRQTLEKITLGSTKEEKLLSLRIIIK 546
              +       +      V   Y             Q    + LG +   +   LR +  
Sbjct: 74  HQAINHSLECLINHEPLPVPLRYFESAGLYYYAWAIQDFGALLLGRSAPFREGLLREMEP 133

Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
            +   +    +       K  +  +  A+  A+  +  KS FLA +SHEIRTPL A+I  
Sbjct: 134 LVNKLALALTSCRQYQRLKLAQQSMIQARDEAQAANKAKSHFLATMSHEIRTPLNAVINL 193

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
           SE++   +     + R  +    +   G  +L +VND+LD S+IE+G++ L      L +
Sbjct: 194 SELLLETQL----DDRQRKLTQGVCEGGRSLLQLVNDVLDFSRIEAGRLELVTTSFRLHD 249

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQI 725
            +    SL +  A  K++    S + ++P ++A D   ++QI  N+L+NAI FT  G  +
Sbjct: 250 LLDGLASLFEKEAVIKKLHFGLSISPDVPDVIAADPSRLRQILQNLLANAIKFTEKGS-V 308

Query: 726 IISTTHTSNEE---------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
            I+    +  +         +I  + DTG+G++  + ++  + F Q+  +   R  G+GL
Sbjct: 309 SIAVRMLAANQQKPPDSVPMMIFHISDTGIGISESDQQRLFQEFSQVDTNLDRRFGGSGL 368

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GL +A  +V    GK    S    G+      P
Sbjct: 369 GLAIAARLVMLMGGKIGCHSVAGIGSTFWFTLP 401


>gi|254432221|ref|ZP_05045924.1| drug sensory protein A [Cyanobium sp. PCC 7001]
 gi|197626674|gb|EDY39233.1| drug sensory protein A [Cyanobium sp. PCC 7001]
          Length = 680

 Score =  280 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 79/450 (17%), Positives = 176/450 (39%), Gaps = 46/450 (10%)

Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK-RKMEIEV 451
                  L  ++     +                    N +  E    +     ++    
Sbjct: 222 TQPVKELLRGVRQVAGGNFGARIALPIGGELGELLEGFNAMTAELEVYKAANIEELTAAQ 281

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
           ++  S++   +DG  +++  G I+  N    +LF +    +  +     L +     ++ 
Sbjct: 282 VKQESLIATMADGAVLLDANGAIVLANPTARRLFRWEGRKLEGQELITELPERLAIELHS 341

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEK 568
            L  ++         +  +G     + L + +   +          ++T+ D++      
Sbjct: 342 ALENVMIGQQEAADVRCNVGEPP--RTLRIVLQPVRDASGESLKGIAMTVQDLTR----- 394

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
                      + ++ +S F++ VSHE+RTPL  I  + E + +     L      E+  
Sbjct: 395 ---------EVELNAAQSRFISNVSHELRTPLFNIKSYVETLHD-LGDQLSEEEKKEFLG 444

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
             +   + +  +VND+LD+S++ES +    FEP+ +  A+ + +   +L A +K + +  
Sbjct: 445 IANAETDRLTRLVNDVLDLSRLESDR-AWSFEPLEVGPAIEQTLRTYRLNAEDKGVKLLF 503

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE------------- 735
                +PR+LA+   + Q+  N++ NA+ FT  GGQI++      +              
Sbjct: 504 ESEEPLPRVLANWDLLLQVFDNLVGNALKFTAEGGQIVLRAYPWPDRCLIDPDALPSGDL 563

Query: 736 ----------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
                      + + + D+G G++  + ++  + F ++ N+      GTGLGL + + ++
Sbjct: 564 PHCDLTSPLPRLRIEIGDSGCGISEADQDRIFERFFRVENAVHFEA-GTGLGLSIVRGIL 622

Query: 786 DANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
           D +  +  + S P  GT      PL D+  
Sbjct: 623 DKHGTQIRMVSEPGIGTSFWFELPLEDSDQ 652


>gi|290511110|ref|ZP_06550479.1| two-component system, NarL family, sensor histidine kinase BarA
           [Klebsiella sp. 1_1_55]
 gi|289776103|gb|EFD84102.1| two-component system, NarL family, sensor histidine kinase BarA
           [Klebsiella sp. 1_1_55]
          Length = 916

 Score =  280 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 84/333 (25%), Positives = 150/333 (45%), Gaps = 17/333 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           +FG+ +   +  P    +               L   +   +             +++ +
Sbjct: 193 IFGWRLMRDVTGPIRNMVNTVDR-----IRRGQLDSRVEGFMLGELDMLKNGINSMAMSL 247

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 248 AAYHEEMQHNVDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTP 307

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+ +          N    ++   I+RS N +L I+ND+LD SK+E+GK+ L  
Sbjct: 308 LNGVIGFTRLTLKTDL----NATQRDHLTTIERSANNLLAIINDVLDFSKLEAGKLILES 363

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P  L  ++ E ++L+   A++K + +  +  NN+P  ++ D   ++QI  N++ NAI F
Sbjct: 364 IPFLLRTSLDEVVTLLAHSAHDKGLELTLNIKNNVPDNVIGDPLRLQQIVTNLVGNAIKF 423

Query: 719 TPSGGQ-IIISTTHTSNEEVILRVR--DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T  G   +++     SN  V + ++  DTG+G+   +  +  + F Q   S   R  GTG
Sbjct: 424 TEHGNIDVLVEQRAISNSRVQIEIQIHDTGIGIPERDQSRLFQAFRQADASISRRHGGTG 483

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           LGL + + +V    G     S P +G+      
Sbjct: 484 LGLVITQRLVKEMGGDISFHSQPNRGSTFWFHI 516


>gi|238789481|ref|ZP_04633266.1| Histidine kinase [Yersinia frederiksenii ATCC 33641]
 gi|238722431|gb|EEQ14086.1| Histidine kinase [Yersinia frederiksenii ATCC 33641]
          Length = 1190

 Score =  280 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 93/430 (21%), Positives = 183/430 (42%), Gaps = 21/430 (4%)

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
              ++  +S     +   K +     +    +     + R   + +   + Q  SI+ A 
Sbjct: 468 PASFDDRSSENEWLMLALKISSGILLVFGLYLCYLVFNKRRQAKLLHTRLQQQESIINAL 527

Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH---YLTEILS 518
              + I  + G +   N   +      + D+L +         T  +      Y   +L 
Sbjct: 528 PFAVFIRTKNGELAVYNNHFADAHQDKLNDMLNQNIEQANWPMTSPLDREIDKYCRYVLL 587

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-YSLTMHDISEWKQEKNKLSHAKKI 577
               Q ++   L      +L  + + I  L  +         DIS+ K  + +L  A+  
Sbjct: 588 DRKPQMVD---LSLEINGELRDIFLWIIPLNNAERSLLGGWLDISQRKTVERELEAARVE 644

Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
           AE  +  KS FLA +SHE+RTP+ AI+G  E ++ +   P+           + ++   +
Sbjct: 645 AESANRTKSTFLATISHELRTPMYAIMGLLE-LEIRNEQPVD----KNTLVTVSKTAQSL 699

Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697
           + +++D++D +KIE+G++++H   V   + +    ++ Q  A+E+R+   +   + IP +
Sbjct: 700 MLLLDDIIDSAKIEAGQLSVHPAVVDFRQEMERMFTIYQPIADERRLRFTSWMDDQIPDL 759

Query: 698 -LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS----NEEVILRVRDTGVGMTNYE 752
            +AD+  ++Q+  N+L NA+ FT  GG + +  T          + + + DTG+G++   
Sbjct: 760 LMADMLRIRQVMGNLLGNALKFTEHGG-VSVDITWEPMDEKRGIMNIDITDTGIGISPAA 818

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY- 811
                +PF Q    +  R  G+GLGL +   ++    G+  + S   KGT + I  PL  
Sbjct: 819 QATLFQPFSQANEGKSPRFGGSGLGLWICHQLIHKMGGQITLESQLGKGTSLFITLPLEV 878

Query: 812 --DTSHPHDC 819
                 P D 
Sbjct: 879 ATSDDLPQDS 888


>gi|256423951|ref|YP_003124604.1| PAS/PAC sensor signal transduction histidine kinase [Chitinophaga
           pinensis DSM 2588]
 gi|256038859|gb|ACU62403.1| PAS/PAC sensor signal transduction histidine kinase [Chitinophaga
           pinensis DSM 2588]
          Length = 384

 Score =  280 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 79/385 (20%), Positives = 167/385 (43%), Gaps = 22/385 (5%)

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVED 491
           ++  + + R  + +++       +++E   D  I +++ +G IL+ N+   K+ GY   +
Sbjct: 11  LQHTERELRAARLELKQTRDNYQNMVEEVKDYAILLMDIDGNILNWNKGAEKIKGYTASE 70

Query: 492 ILRKPFTVFLEQNTPSVM--NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
           I+ K F +F      + +     L   +       ++       K+  L    + I  + 
Sbjct: 71  IIGKNFRLFYTARDRASLVPEQLLHSAVKDGR---VQHEGWRVRKDGALFWSNVTITAIH 127

Query: 550 FSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
                   +    HD+++ +  +       +  E ++S    F    SH+++ PL +I  
Sbjct: 128 NRDGQVTGFLKITHDLTDKRLAEENSRLYTEKLEIKNSELEQFTYIASHDLQEPLRSISS 187

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
            +E+I  Q  G L +     Y ++I +S N +  ++  LLD S++  GK  L  + V  +
Sbjct: 188 LAEMISEQYHGKL-DETADTYLHFILQSVNRMSQLIKGLLDYSRL--GKAKLDPQ-VDCN 243

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ- 724
             +   ++ +Q    +   +I       +P + A    +K +  N++SNAI F     Q 
Sbjct: 244 VIMETVLADLQSAIKDSNAIINVK---QLPVLSAYPMELKLLFQNLISNAIKFRKKDQQL 300

Query: 725 -IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
            + IS   T +  +  + +D G+G+     +K  + F ++ +  +   EGTG+GL   K 
Sbjct: 301 YVNISACLTDDGWI-FQFQDNGIGIDQRFSDKIFEIFQRLHS--KSAYEGTGIGLAHCKK 357

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIF 808
           +V  + G+ ++ S P +G+    I 
Sbjct: 358 IVAMHNGRIWVDSIPGEGSKFYFII 382



 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/113 (15%), Positives = 37/113 (32%), Gaps = 8/113 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH---IDPNNHIGDLLKRQNTWYG 145
           +D  G +   ++   K  G  A ++IG              + P   +   +K       
Sbjct: 47  MDIDGNILNWNKGAEKIKGYTASEIIGKNFRLFYTARDRASLVPEQLLHSAVKDGR-VQH 105

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
           +      +G   +  + + A  I++R+ + +GF    I H            +
Sbjct: 106 EGWRVRKDGALFWSNVTITA--IHNRDGQVTGFLK--ITHDLTDKRLAEENSR 154


>gi|90411150|ref|ZP_01219163.1| hypothetical two-component sensor [Photobacterium profundum 3TCK]
 gi|90327996|gb|EAS44317.1| hypothetical two-component sensor [Photobacterium profundum 3TCK]
          Length = 850

 Score =  280 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 78/253 (30%), Positives = 130/253 (51%), Gaps = 10/253 (3%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           ++  +    +L  A++ AE+ +  KS+FLA +SHEIRTP+  IIG S +++         
Sbjct: 223 VNRIRNHYEELELAREEAEEANRKKSEFLANMSHEIRTPMNGIIGLSSLLQEMDM----P 278

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
               EY N ++ S   +LD++ND+LD SKIE+G++ L    ++L E   E  S+  + A+
Sbjct: 279 KDQKEYINMLNISSLSLLDLINDILDFSKIEAGRLELEHTSLNLFELNKEVESIFLVKAS 338

Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE--- 736
           EK I  + S    IP  +L D   ++Q+  N++SNAI FT +G  + + T   +  +   
Sbjct: 339 EKSIAFQCSIDKRIPPMLLGDATQLRQVLNNLVSNAIKFTHTG-YVHLHTQLETETDTET 397

Query: 737 -VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            +   V D+G+G++    +     F Q   S   +  GTGLGL + + +V    G+  I 
Sbjct: 398 TIRFEVIDSGIGVSVDMHDAVFDKFQQADGSTTRKYGGTGLGLSICRQIVHLMGGEIKIN 457

Query: 796 STPAKGTLIEIIF 808
           S   KG+      
Sbjct: 458 SEVGKGSTFYFTI 470


>gi|329733745|gb|EGG70071.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Staphylococcus epidermidis VCU045]
          Length = 239

 Score =  280 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 70/256 (27%), Positives = 139/256 (54%), Gaps = 21/256 (8%)

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
             + +HDI+  ++ +              + + +F+A VSHE++TP+T+I GF+E +   
Sbjct: 1   MVVVLHDITNLQKLE--------------NLRREFVANVSHELKTPITSIKGFAETLIE- 45

Query: 614 RFGPLGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
             G   + + ++ + N I +  N +  +V DLLD+S IE  K  L    ++L E     I
Sbjct: 46  --GAKNDEQSLDMFLNIILKESNRIESLVTDLLDLSHIEQQK-ELEINYMNLSELAINII 102

Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
             +Q  A  KRI I++    ++  I A    + Q+  N+LSNAI+++    ++I+   + 
Sbjct: 103 DNLQTQAYNKRIKIQSEIEKDVI-IEAHENKIAQVITNLLSNAINYSSEDNKVIVRV-YR 160

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
           ++ +V L ++D G+G++  + ++  + F ++  ++     GTGLGL + K +V+A+ G+ 
Sbjct: 161 NDNKVYLEIQDYGIGISETDQKRIFERFYRVDKARSRDSGGTGLGLSITKHIVEAHNGRI 220

Query: 793 YIFSTPAKGTLIEIIF 808
            + S P KG++ +++F
Sbjct: 221 DVKSAPGKGSIFKVLF 236


>gi|298242541|ref|ZP_06966348.1| multi-sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297555595|gb|EFH89459.1| multi-sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 593

 Score =  280 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 84/402 (20%), Positives = 168/402 (41%), Gaps = 45/402 (11%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           R+ E+E  +L  ++ + ++G+ I + EG + S N++   + G              L + 
Sbjct: 205 RQAELERQRLELVIRSMAEGLLITDAEGAVTSLNQSARHMLGQANVHFQLNIPLHELAKE 264

Query: 505 TPSVMNHYLTEILSLDLR--QTLEKITLGSTKEEKL-LSLRIIIKKLPFSS-------CY 554
                   L +     L+      +        E + L+L +    L  +          
Sbjct: 265 NAVPWLERLADTAQEALQGKTVTNQELFIGEGNETVPLTLHVSAAPLYAADDVTSPPIGI 324

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI---- 610
              ++D++  KQ +                K +F++ VSHE+RTPLTAI G+++ +    
Sbjct: 325 VAVLNDVTSMKQVE--------------RLKDEFVSVVSHELRTPLTAIKGYTQHLVRRV 370

Query: 611 -------------KNQRFGPLGNPRY-IEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
                         N    P     Y +   N I      +  +VNDLLD+S+++ G++ 
Sbjct: 371 ERRLRKLRGTPPQLNPLPTPEPPESYDLRSLNIIQSQTEHLERLVNDLLDLSQLQWGQLQ 430

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716
           L +E   L + ++E +  +Q  A +    +         RI+AD + + Q+  NIL NAI
Sbjct: 431 LQYEEFYLTDLLNEYVHTIQNSAEQH--TLYLDIQTRDTRIIADRKRIGQVIGNILDNAI 488

Query: 717 HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
            ++P+GG++ +        E ++ + D G+G++    +   + F ++ N+   +  G GL
Sbjct: 489 KYSPNGGKVTVRLQ-RQQGEFLVSIIDEGIGVSLEHYDHIFERFYRVHNTSTQQYSGIGL 547

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
           GL + + ++  + G+ +  +    GT      P    +  H+
Sbjct: 548 GLFVTREIITRHGGRIWFTNNQHIGTTFYFTLPPTTRTASHE 589


>gi|254521427|ref|ZP_05133482.1| sensory box histidine kinase/response regulator [Stenotrophomonas
           sp. SKA14]
 gi|219719018|gb|EED37543.1| sensory box histidine kinase/response regulator [Stenotrophomonas
           sp. SKA14]
          Length = 914

 Score =  280 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 99/787 (12%), Positives = 214/787 (27%), Gaps = 84/787 (10%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNT-W 143
             W           ++     +G    + +G  L  +           I      Q + +
Sbjct: 3   LVW--GPELVFL-FNDAYAPILGPRLPQAMGAPLRSLWADAWPAVREPIERAFAGQGSRF 59

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                     G         +   ++  + + +G   F +          +    R +++
Sbjct: 60  ENVPVAMNRYGQPEDTWWTFSFSALHGDDEQVAGA--FCVTKEVTGMIVAQQKLARENER 117

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
              L E      +         +  +P     + ++            + +      LL 
Sbjct: 118 LIALFEKSPMFMAFLTGPEHRIALVNPGYEQLIGHRQVLGRPLVEALPEAVDQGYVDLLD 177

Query: 264 S---------EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
                           +          ++     F   ++ + +           +    
Sbjct: 178 EVYRTGEPYIGRKVAYDSGVPQPGFGPRHIVDVVFQPCKDEAGQVNGIFVQGLDLTPQVA 237

Query: 315 FDE----GENLTPETVDKCPIPFFVYSH--GNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
            ++     E    + +D       + +   G +   N        +   + +    GL  
Sbjct: 238 LEQHLSLTEARHRQIMDSARDYAMIATDMDGLITLWNRGAEETLGWHESEVLGQHAGL-- 295

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
           L     L  N   + +   R              ++                     E +
Sbjct: 296 LYLQDDLQANRFQQNMQHARLHGGLSGERW----LRRRDGGRFWAQGSMTLLRGGEGEAV 351

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI---ILSTNRAVSKLF 485
               +  +    R     +     +L +++ A +  +  I+ +     ++      ++L 
Sbjct: 352 GFVVVFRDRTSERTAADALAQSERRLAALVSAATQSLYSISADWQQMSLIYRQGDAAEL- 410

Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
                D         +       ++  + E L       LE        +  +  +++  
Sbjct: 411 ----RDAQGSWREQLIHPGDRLAVDAAIDEALQ--ATSALEVEHRTLLPDASVRWVQLRA 464

Query: 546 KKLPFSSC----YSLTMHDISEWKQEKNKLSH--------------------AKKIAEKE 581
             L         +     DI++ +  + +L                       +    ++
Sbjct: 465 VPLLDDHGRVKEWFGAASDITDRRIAQQRLQQLTLTLEERVQSRTAELMAMEERLRQGQK 524

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
                     ++H+    LTA+    E +   R           Y        +    + 
Sbjct: 525 MESLGQLTGGIAHDFNNMLTAVSMGLE-LLEMRVEQGRVDGLERYLEMARSGADRAAALT 583

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701
             LL  S+    +  L    V +   VS  + ++   +    I I T F +    +  D 
Sbjct: 584 QRLLAFSR----RQTLAPSSVRVAALVSGMLDIL-NRSIGPSINIETRFEDFEDAVRVDA 638

Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTS-------------NEEVILRVRDTGVGM 748
             ++   LN+  NA    P GG IIIS++  +              + V L VRDTG GM
Sbjct: 639 PQLENALLNLCINARDAMPGGGTIIISSSTEALAGTRSERLGLPAGDYVRLSVRDTGTGM 698

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
               LEK  +PF          G+GTGLGL +       + G+  + S P  GT + +  
Sbjct: 699 DASVLEKVFEPFFTTKP----IGQGTGLGLSMIYGFTRQSGGQVDVESAPGAGTTMHLYL 754

Query: 809 PLYDTSH 815
           P  D + 
Sbjct: 755 PKSDPAQ 761


>gi|161830457|ref|YP_001597583.1| PAS/histidine kinase/ATPase domain-containing protein [Coxiella
           burnetii RSA 331]
 gi|161762324|gb|ABX77966.1| PAS domain S-box/His Kinase A (phosphoacceptor) domain/ATPase,
           histidine kinase-, DNA gyrase B-, and HSP90-like
           domain/response regulator receiver domain/Hpt domain
           protein [Coxiella burnetii RSA 331]
          Length = 657

 Score =  280 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 78/371 (21%), Positives = 159/371 (42%), Gaps = 24/371 (6%)

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED-ILRKPFTVF-LEQNTPSV 508
              L  I+      I   ++  I    N+  ++ FGY  +  I+ K    F   +     
Sbjct: 9   EEALLEIINNVPHYIFWKDKNLIFRGCNKMFAEQFGYKDQSGIIGKTDEDFPWSKELRKK 68

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEW 564
                  ++     + L+        +  + ++ +                    DI++ 
Sbjct: 69  YRQDDLSVIETGKPK-LDYEESQVQADGSIKTVLVSKVPYRNKEGNIVGILGIYTDITKR 127

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           K+ +  L        K +  KS+FLA + H++RTPLT II  +E +    +      +  
Sbjct: 128 KRMEESL-------RKANKVKSEFLANMGHDLRTPLTGIILIAEYL----WKKQTEEKDK 176

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           + +  +  +G  +L  +N++L+I+ +E+G ++   +  SL + + +  ++++    +K++
Sbjct: 177 QLSKDLILAGKQLLHFINEVLEITNVEAGNIDYEKKSFSLKKLIDQVFAMLRPSFQQKQL 236

Query: 685 LIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTH--TSNEEVILR- 740
                +  +IP +L      + +I +N+L N++ FT  G Q+ I T     S  +V++  
Sbjct: 237 AFYNDYDPHIPEVLIGSEIMIFRILMNLLGNSLKFTEEG-QVTIQTKLANRSGNQVLIEL 295

Query: 741 -VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V DTG+G+   E +     F ++  S   +  G+GLGL L K   +A  G+  + S P 
Sbjct: 296 IVSDTGIGIPKEEHKNIFAQFKRLTPSYANKYRGSGLGLFLVKTYAEALQGQVTLESEPG 355

Query: 800 KGTLIEIIFPL 810
           +G+      PL
Sbjct: 356 RGSRFICTIPL 366


>gi|54294799|ref|YP_127214.1| transmission sensor LetS [Legionella pneumophila str. Lens]
 gi|53754631|emb|CAH16115.1| Legionella transmission sensor LetS [Legionella pneumophila str.
           Lens]
          Length = 910

 Score =  280 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 78/248 (31%), Positives = 128/248 (51%), Gaps = 12/248 (4%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E K  +  L   K    ++S  KS+F+A +SHEIRTP+  +IGF+ V+   +  PL    
Sbjct: 278 EEKNIELSLEKKKTE--EKSRQKSEFIANMSHEIRTPMNGVIGFTNVLLESKLDPL---- 331

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
            ++Y   I  S   +L I+N +LD SKI++GK+NL   P+ +   + E +SL    A++K
Sbjct: 332 QLDYVKTIKSSAQDLLSIINAILDFSKIDAGKLNLDCIPLDVRGCIDEVLSLASPNAHKK 391

Query: 683 RILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----V 737
            I +      N+P  +L D   +KQI  N+++NA+ FT  G  ++I T      +    +
Sbjct: 392 VIDLIPITDINVPKMVLGDPLRIKQIISNLVTNAVKFTDHG-YVLIRTKIEQETDKDYTL 450

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
           +  + DTG+G++  +  K    F Q   S   R  G+GLGL + K + +   G+  + S 
Sbjct: 451 LFAITDTGIGISPEDQTKLFTAFNQADTSITRRYGGSGLGLVICKKLCEEMHGRISLTSE 510

Query: 798 PAKGTLIE 805
             KG+   
Sbjct: 511 INKGSTFS 518


>gi|319400834|gb|EFV89053.1| sensor protein srrB [Staphylococcus epidermidis FRI909]
          Length = 586

 Score =  280 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 66/354 (18%), Positives = 146/354 (41%), Gaps = 32/354 (9%)

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           ++L +  +G+  IN +  I+ +N+    +  +             ++  +   +   +  
Sbjct: 259 TLLNSMVEGVLGINNQREIILSNKMADDIMRH-------------IDDFSKESIEQQIEA 305

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575
                  + LE            +S  I   +    S   + + D++             
Sbjct: 306 TFESQENEYLELEINTRYY--VFISSYIDRIQTNGRSGIVMVIRDMT------------- 350

Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
                    K DF+A VSHE+RTP++ + G++E I +            +    +     
Sbjct: 351 -NEHNLDQMKKDFIANVSHELRTPISLLQGYTESIVDGIVTE--PDEIRDSLAIVLDESK 407

Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695
            +  +VN+LL+++++++  +++  E   +   + +  S  ++ + E  + +     N   
Sbjct: 408 RLNRLVNELLNVARMDAEGLSVEKELQPIQHLLDKMESKYRMQSEELGLTMTFDSNNEEQ 467

Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755
               D+  + Q+  N++ NA  +T +G  I IS     ++  IL + DTG G+    L++
Sbjct: 468 LWNYDMDRMDQVLTNLIDNATRYTQAGDSIKISID-EDSDFNILTITDTGTGIAPEHLKQ 526

Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
               F ++  +++   +GTGLGL + K +++ + G+  + S   KGT   I  P
Sbjct: 527 VFDRFYKVDAARKRGKQGTGLGLFICKMIIEEHGGRIDVESELGKGTSFIIRLP 580


>gi|15600677|ref|NP_254171.1| two-component sensor [Pseudomonas aeruginosa PAO1]
 gi|107104586|ref|ZP_01368504.1| hypothetical protein PaerPA_01005665 [Pseudomonas aeruginosa PACS2]
 gi|218894587|ref|YP_002443457.1| putative two-component sensor [Pseudomonas aeruginosa LESB58]
 gi|9951818|gb|AAG08869.1|AE004961_4 probable two-component sensor [Pseudomonas aeruginosa PAO1]
 gi|218774816|emb|CAW30634.1| probable two-component sensor [Pseudomonas aeruginosa LESB58]
          Length = 595

 Score =  280 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 90/558 (16%), Positives = 198/558 (35%), Gaps = 41/558 (7%)

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
                 ++    Q DF  +                       YL  + H          +
Sbjct: 72  RETPDGQALERSQNDFRRVLEQGRANTVDSAEQAALDGVRDAYLQLQAHTPALLEAPMAD 131

Query: 320 -NLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEI--AGGLSTLLDAPKLS 376
            +   E  +             L   +   L L      +      A  ++ LL    ++
Sbjct: 132 NDGFSEAFNGL----------RLRLQDLQQLALAGISEAETSARHRAYLVAGLLGLVGVA 181

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
                       + R                E    +T  P     +  +   + G+  E
Sbjct: 182 ILLIGFVTAHSIARRFGAPIETLARAADRIGEGDFDVTL-PMTNVAEVGQLTRRFGLMAE 240

Query: 437 DVD--TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
            +    + +  ++     +L ++L++  DG+ I + +G I   N    +      +   +
Sbjct: 241 ALRQYRKTSVEEVLSGERRLQAVLDSIDDGLVIFDNQGRIEHANPVAIRQLFVSNDPHGK 300

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-- 552
           +   +  + +    +   L   +  +    L    +    E +LL+  +     P     
Sbjct: 301 RIDEILSDVDVQEAVEKALLGEVQDEAMPDL---VVDVAGESRLLAWSLYPVTHPGGHSV 357

Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
              L + D++E +  +                +S+F+ R SHE+RTP+T +   +  +  
Sbjct: 358 GAVLVVRDVTEQRAFE--------------RVRSEFVLRASHELRTPVTGMQ-MAFSLLR 402

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
           +R       R  +    +D   + ++ ++NDLL+ S+ ++G   L      L + +++A 
Sbjct: 403 ERLDFPAESREADLIQTVDEEMSRLVLLINDLLNFSRYQTGMQKLELASCDLVDLLTQAQ 462

Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
                    +R+ ++    + +PR+  D   ++++  N+L NA+  +  GGQI +     
Sbjct: 463 QRFIPKGEARRVSLQLELGDELPRLQLDRLQIERVIDNLLENALRHSSEGGQIHLQ-ARR 521

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
             + V++ V D G G+   +  +  +PF Q+      +  G GLGL L K ++  + G+ 
Sbjct: 522 QGDRVLIAVEDNGEGIPFSQQGRIFEPFVQV----GRKKGGAGLGLALCKEIIQLHGGRI 577

Query: 793 YIFSTPAKGTLIEIIFPL 810
            + S P +G    ++ P+
Sbjct: 578 AVRSQPGQGARFYMLLPV 595


>gi|78355605|ref|YP_387054.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78218010|gb|ABB37359.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 763

 Score =  280 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 86/533 (16%), Positives = 191/533 (35%), Gaps = 56/533 (10%)

Query: 313 AYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
                 E      V       + +    N  Y +P +  +  ++  +        ++ + 
Sbjct: 250 QALRNSEERYSLAVGGTNDGIWDWDLISNKVYFSPRWKEIIGFQDHEIPNEIPEWTSRVH 309

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
              L+       + L R     + A    + ++    +   +        +   +     
Sbjct: 310 PDDLAKILKAHEMYLSR----ELPAFEVEYRLRHKDGSYRWILGRGLALWSDADQPYRMA 365

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
           G   +  D + ++R++     +L +IL +    I  ++  GIIL  NR   +       D
Sbjct: 366 GAHTDITDRKESERELLATKNRLDNILNSMPSLIVGVSDNGIILQWNRTAEEETSVSARD 425

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
            +  PF   L + +   +   + + L+     +LE+  +  +   +   + I        
Sbjct: 426 AIGTPFENTLPEFSF--LMGKVLQSLNSGETISLERKAITYSDRVRTFDIIIYPVTERGE 483

Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
               + + D+++  + +  +   +K+            A ++HEI  PL  I+  ++ I 
Sbjct: 484 HSAVIRIDDVTDRIRIEEMMVQTEKMM-----SVGGLAAGMAHEINNPLGGILQGAQNIV 538

Query: 612 NQRFGPLGNPRYI---------------------EYANYIDRSGNLVLDIVNDLLDISKI 650
            +    +                            + + I  SGN    IV+++L+ S+ 
Sbjct: 539 RRISTEIKANHAAADEVGCDLTAIRAYMEKRGITRFLDGIQESGNRAAKIVSNMLEFSRR 598

Query: 651 ESGKMNLHFEPVSLDEAVSEAISL------VQLYANEKRILIRTSFANNIPRILADLRSV 704
              +  L      +   + + + L      ++   + + I +   +A ++P I      +
Sbjct: 599 SESRRQLA----DMHALMDKTVELAANDYDLKKKYDFRHIELVRDYAPDLPGIHCTPTEI 654

Query: 705 KQIALNILSNAIHFT---PSGG----QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757
           +Q+ LN+L N+       P       +I + T    + +V ++V D G GM     ++  
Sbjct: 655 EQVLLNLLKNSAQAMAGRPKDSTEPPRITLRTRLQHD-KVCIQVLDNGPGMDEETRKRVF 713

Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMV-DANMGKFYIFSTPAKGTLIEIIFP 809
           +PF    +     GEGTGLGL ++  ++   + G F + S P KG    I+ P
Sbjct: 714 EPFFTTKS----VGEGTGLGLSVSYFIITTNHGGSFTVDSEPGKGACFTILLP 762


>gi|262197751|ref|YP_003268960.1| histidine kinase [Haliangium ochraceum DSM 14365]
 gi|262081098|gb|ACY17067.1| histidine kinase [Haliangium ochraceum DSM 14365]
          Length = 678

 Score =  280 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 86/480 (17%), Positives = 183/480 (38%), Gaps = 39/480 (8%)

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
            +S  +      D+        +   +   A S +L  I        A  F     +   
Sbjct: 65  DISPRIAMRGTRDSVDNVARTAHLLQQNTRAISEQLEYITQTLFAMSAFNFSTDVPSRGT 124

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
            + +         +   + +  +    +Q  S+L +  + + +++  G ++  NRA+ +L
Sbjct: 125 SDPVDGLADAVRLLQEELARSAVPSSHVQ--SLLSSMPNPVGMLDLRGRVVQQNRAMERL 182

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
                     +     L +   +     + E                      L  +  +
Sbjct: 183 LKSNQNGDFMEWLNACLPEARRAKGRLEIAEWQDPVQISYKIADIELHY----LFFVAPL 238

Query: 545 IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
           +     +  + +   D+++    + +L  AK+IAE  +  +  F+  +SHEIRTPL  I+
Sbjct: 239 VSHFDDTEGFVVVGIDMTQQVWIEKELERAKEIAESHARARFSFVTNMSHEIRTPLHGIL 298

Query: 605 GFSEVIKNQ-RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           G +E++    +   +      ++A  I   G  +  ++ D++D S I+  ++ L  +P  
Sbjct: 299 GSTELLLGSLKSMDIDPMDIEKHAKTIQTCGQHLHALITDIMDFSHIDGNRIKLEQQPFD 358

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPR---------------------ILADLR 702
           L   + + +   +   +  +  + T   N +P                      +  D +
Sbjct: 359 LPNLLRDCMENAKRAHSGVQEGVITRITNTLPPSPGGDSSVATRVSVGDDVPRFVAGDAK 418

Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTS--------NEEVILRVRDTGVGMTNYELE 754
            +KQ+  N+LSNA+ FT S G + +    +            + + + DTG+G+   + +
Sbjct: 419 RIKQVITNLLSNALKFT-SHGTVEVRALLSEKLGDPGAEQARLRIEIVDTGIGIPQAKQD 477

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT--LIEIIFPLYD 812
           +  +PF Q   S      GTGLGL + + ++D   GK  I S P +G+    E++ P+  
Sbjct: 478 RLFEPFEQADVSSTRAYGGTGLGLAIVRGLIDIMNGKLGIESKPGEGSNFWFEVVLPVAR 537


>gi|320158481|ref|YP_004190859.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           vulnificus MO6-24/O]
 gi|319933793|gb|ADV88656.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           vulnificus MO6-24/O]
          Length = 1199

 Score =  280 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 89/381 (23%), Positives = 164/381 (43%), Gaps = 22/381 (5%)

Query: 436 EDVDTRINKRKM-EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED--- 491
           + +       ++ + ++  L  +L+     I+I + +G ++ +N+A    F    E+   
Sbjct: 523 DSLRQSEKVVELSQHQISWLTKLLDTIPSMISISDSKGRLVLSNQAYQASFRQCRENGCV 582

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
            L    +              + ++ + +         +             I+      
Sbjct: 583 DLESVCSFLHLSEREQAEFEEIIQVPASECGMGERFYHVTRKA---------ILHDQMEM 633

Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
           + Y     DIS+ KQ +  L  + + A +    ++ FLA VSHE+RTP+ A++G  E++ 
Sbjct: 634 THYLTLFSDISDLKQTELALRESNRAALQAVEARNQFLAVVSHELRTPIAAMLGLMEILS 693

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
           ++    L N    +  +    S   +   VND+LD SKIE+ ++ L  +   + E +   
Sbjct: 694 HR----LSNSESQQLLDNAICSAERLSLHVNDILDFSKIEASQLQLDIQEYRIIEELGPV 749

Query: 672 ISLVQLYANEKRILIRTSFANNIPRILA--DLRSVKQIALNILSNAIHFTPSGGQIIIST 729
           +   +  A  K +     +      I A  D   V QI  N+LSNA+ FT  G QI ++ 
Sbjct: 750 LRSFEASAQLKGLQFDVHWQPTA-YIDAQYDALRVNQIVSNLLSNAVKFTEVG-QIKVAI 807

Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
               N  + + + DTG GMT  +L+   +PF Q   S   R  GTGLG+ + K+++D   
Sbjct: 808 ACDENA-LSIEIVDTGCGMTEAQLDCVFQPFVQADTSITRRFGGTGLGMSIVKSLLDLMG 866

Query: 790 GKFYIFSTPAKGTLIEIIFPL 810
           G    +S   +GT + +  P+
Sbjct: 867 GTIAFYSELEQGTKVSVWIPV 887


>gi|313201939|ref|YP_004040597.1| PAS/PAC sensor signal transduction histidine kinase [Methylovorus
           sp. MP688]
 gi|312441255|gb|ADQ85361.1| PAS/PAC sensor signal transduction histidine kinase [Methylovorus
           sp. MP688]
          Length = 444

 Score =  280 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 79/381 (20%), Positives = 164/381 (43%), Gaps = 34/381 (8%)

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
            ++ ++   + +      A  DG+ ++N   +I   N    +  G  ++  + +P +  +
Sbjct: 88  RSQTQLSSALDRFRHAASALPDGVVLLNGHDLIEWCNPPAERHLGLSMKQDVGQPISYLV 147

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDI 561
             +       +++ + S +    ++  +      +  L L+II   +       L   DI
Sbjct: 148 RSS------DFISYLDSHNYTDPIKLKSWRLA--DTTLELQIIPFGINQK---LLISRDI 196

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           S+ ++ +                + DF+A VSHE+RTPLT + GF E + +         
Sbjct: 197 SQLEKVE--------------HMRRDFIANVSHELRTPLTVVGGFLETLSD--MDGAVPD 240

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
               Y + +      +  +V DLL +S++E+         + ++  +S  ++  +  +N+
Sbjct: 241 STRSYFDMMQEQTGRMRRLVEDLLTLSQLENSPTIPQDTEIDINALLSMVMNEARGLSND 300

Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
           +   I       +  +   L  +     N++SNAI +TP+GG I IS      + V   V
Sbjct: 301 RH-TITLEADTTL-NLTGALEELHSALGNLVSNAIRYTPTGGSIHISWKTRGTDGV-FSV 357

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
           +DTG+G+    +++  + F ++  S+     GTGLGL + K ++  +  +  I S   KG
Sbjct: 358 KDTGLGIEQQHIDRLTERFYRVDRSRSRETGGTGLGLSIVKHILTRHQARLDIESEFGKG 417

Query: 802 TLIEIIFP----LYDTSHPHD 818
           +    +FP    ++ TS P +
Sbjct: 418 STFSAVFPKARLVHKTSSPSN 438


>gi|212693148|ref|ZP_03301276.1| hypothetical protein BACDOR_02655 [Bacteroides dorei DSM 17855]
 gi|212664253|gb|EEB24825.1| hypothetical protein BACDOR_02655 [Bacteroides dorei DSM 17855]
          Length = 494

 Score =  280 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 102/500 (20%), Positives = 190/500 (38%), Gaps = 35/500 (7%)

Query: 321 LTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
           L+ + ++  P    F+ ++G +   N   +   +    D       +S ++   +   N 
Sbjct: 13  LSKQILNILPSALIFMDANGTIERINDEAIHELELGDRDIKGEN--ISQIISILRNHQNI 70

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
             + +   + +   I                  +  I F    +      +  +    + 
Sbjct: 71  IPELIEALKHEEKIIDFPKATFIKS-------ELQNIRFIAERRIASVFTKKKLSQMILS 123

Query: 440 TRINKRKMEIEVMQLCSILEATSDGI----AIINREGIILSTNRAVSKLFGYPVED--IL 493
            R  + ++  +      I+              + E   L  +    K    P +D  + 
Sbjct: 124 FRNIEGELTQQH-----IINMALSLTKIYPWFYDMEKKKLIIDARWFKYLNIPTKDYTLT 178

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553
            + F  +L  +    + + LT  ++     T          +            L     
Sbjct: 179 EEEFAAYLHPDDRDTLMNALTNQIA-GNLNTEAFTYRLKQSDGSWEWFEEQSLYLEQIEG 237

Query: 554 ----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                      I E K  + KL  A+  AE+    KS FLA +SHEIRTPL AIIGFS +
Sbjct: 238 APYRIIGACQSIQEHKNAEEKLMFARDKAEQSDKLKSAFLANMSHEIRTPLNAIIGFSNL 297

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           + ++           E+ + I+++   +L +++D++D+SKIES  +    +  SL + +S
Sbjct: 298 LVSEEM---DGEESKEFVSIINQNCEQLLVLISDIIDMSKIESNSIEFKIQKQSLHQILS 354

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
           E      L    K I  R         I+ D    KQ+  N+++NAI FT  G  I + +
Sbjct: 355 EIYQCQSLNIPSK-IEFRLELPEEDTEIMIDTTRFKQVINNLINNAIKFTMYG-HITLGS 412

Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
               N  + + V+DTG+GM   +L    + F ++ + +     G GLGL + K +++   
Sbjct: 413 KILQNGTIDIYVKDTGMGMPQEKLAHIFERFYKMDSFK----PGAGLGLSICKTIIEHMQ 468

Query: 790 GKFYIFSTPAKGTLIEIIFP 809
           G+  + S   KG+   I  P
Sbjct: 469 GEINVTSIEGKGSNFTITIP 488


>gi|209966599|ref|YP_002299514.1| Complexhybrid Signal Transduction Protein [Rhodospirillum centenum
           SW]
 gi|209960065|gb|ACJ00702.1| Complexhybrid Signal Transduction Protein [Rhodospirillum centenum
           SW]
          Length = 795

 Score =  280 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 99/609 (16%), Positives = 190/609 (31%), Gaps = 30/609 (4%)

Query: 226 SQQSPPPHLRMKNKVSSLTEYYAHKDDV-LKTEKYPLLTSEESSLPEQEDFHTINLNQYT 284
             + PP        V+      A                     L    D         +
Sbjct: 62  GMRPPPCLADTGPGVAGPGVAEAVPGTASALAVPVEARGEIFGVLTLLRDRRRARFGTES 121

Query: 285 KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY-SHGNLFY 343
                   +       +   HR      A            +   P   ++    G+  +
Sbjct: 122 LALAAELGRRAGAALAQARDHRKAQDSEARERTLSLELSALMAAVPAAVWIAGDRGDRVW 181

Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH-- 401
            N +   L             G S  + A        ++ +     D T     A L   
Sbjct: 182 MNGTAARLLHLSQAAPQGDPQGASQGVVADPDVVLRQVRRLRRGGEDLTPADLLAHLVKP 241

Query: 402 ------------TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449
                        ++    +   +       A     +        +    R  +R +  
Sbjct: 242 DCPEGGQRNVELELRARGGSVRHLLGNVAPLAGPAGGSRGSIAAFVDVTAMRRAERTLRA 301

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
              +   + +     +   +R G +   N   S   G P        +   +       +
Sbjct: 302 NEHRFREMADMVPAVVWTADRHGRVTYVNARWSDWTGTPATAAAAGRWADCVHPGDRDRV 361

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWK 565
                  ++       E      T +            L  +      +  T  DI + +
Sbjct: 362 LDRWRASVADG--SPFEVEYRLRTADGGSRWHLCRALPLRGARGGIAAWFGTSVDIEDRR 419

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
             + +L  A+++AE+    KS FLA  SH++R P  A+        +     L  P   E
Sbjct: 420 VAEEELREARRVAEQADRAKSQFLAAASHDLRQPFQAMRLL----LHLLTDRLDRPEQRE 475

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
            A+ +  +     +++  LLDIS +++G ++    PV L   +   +S  +  A  K + 
Sbjct: 476 LAHKLSVALGSGEELLRALLDISILDAGTVSPAIAPVELTPLLVRLVSEAKPQATAKGLR 535

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +R    +     L D   ++++  N+LSNA+ +T +GG  I+       + V + V DTG
Sbjct: 536 LRLRIRSA--AALTDAVLLERMLRNVLSNAVKYTAAGG--ILVACRPRGDRVRVEVWDTG 591

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
            G+    L+   + F Q+ N ++ R +G GLGL + +           + S P +GT+  
Sbjct: 592 RGIPEDRLDTVFEEFVQLGNPERDRSKGLGLGLSIVRRAARMLGHPIRLISRPGRGTVFM 651

Query: 806 IIFPLYDTS 814
           I  P   ++
Sbjct: 652 IELPAARSA 660



 Score = 67.4 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 27/256 (10%), Positives = 55/256 (21%), Gaps = 13/256 (5%)

Query: 74  FVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI 133
           F            W  D HG +  ++       G  A      R  D       D     
Sbjct: 306 FREMADMVPA-VVWTADRHGRVTYVNARWSDWTGTPATAAAAGRWADCVHPGDRDRVLDR 364

Query: 134 GDL-LKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192
               +   + +  +  L   +G + +      ALP+            FG          
Sbjct: 365 WRASVADGSPFEVEYRLRTADGGSRWHLCR--ALPLRGARGGI--AAWFGTSVDIEDRRV 420

Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD 252
                +   +        K    +             P   +R+   + +       + +
Sbjct: 421 AEEELREARRVAEQADRAKSQFLAAASHDLR-----QPFQAMRLLLHLLTDRLDRPEQRE 475

Query: 253 VLKTEKYPLLTSEESSLPEQE--DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310
           +       L + EE      +        ++          L        +  +      
Sbjct: 476 LAHKLSVALGSGEELLRALLDISILDAGTVSPAIAPVELTPLLVRLVSEAKPQATAKGLR 535

Query: 311 LSAYFDEGENLTPETV 326
           L         LT   +
Sbjct: 536 LRLRIRSAAALTDAVL 551


>gi|312885615|ref|ZP_07745251.1| integral membrane sensor hybrid histidine kinase [Mucilaginibacter
           paludis DSM 18603]
 gi|311301927|gb|EFQ78960.1| integral membrane sensor hybrid histidine kinase [Mucilaginibacter
           paludis DSM 18603]
          Length = 783

 Score =  280 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 70/246 (28%), Positives = 125/246 (50%), Gaps = 8/246 (3%)

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           +    L  A+  AE+    KS+FL+ +SHEIRTPL ++IG S ++          P  +E
Sbjct: 397 RVSFALKRARAQAEQGLKAKSEFLSTMSHEIRTPLNSVIGMSHLLLKTN----PRPDQVE 452

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           + + +  S N +L IVND+LD +KIE+GK+      + +       ++ +Q  AN+K I 
Sbjct: 453 HLDVMLFSANNLLAIVNDILDYNKIEAGKIVFEHTEMDIASIAGNIVAGLQNSANDKGIG 512

Query: 686 IRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ---IIISTTHTSNEEVILRV 741
           ++    + +   ++ D   + Q+  N++ NAI FT +GG    I +      +  + + V
Sbjct: 513 LKLQVDSALNNKVIGDPTRLFQVISNLVHNAIKFTQAGGVEVGITVKGQTEHDVTLSIWV 572

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
           +DTG+G++  + +   + F Q  +S      GTGLGL ++K +++       + S   KG
Sbjct: 573 KDTGIGISKDKQKLIFERFTQADSSTSRGFGGTGLGLAISKRILELQNSTLQLESEEGKG 632

Query: 802 TLIEII 807
           +    I
Sbjct: 633 STFYFI 638


>gi|260566424|ref|ZP_05836894.1| sensory box histidine kinase/response regulator [Brucella suis bv.
           4 str. 40]
 gi|260155942|gb|EEW91022.1| sensory box histidine kinase/response regulator [Brucella suis bv.
           4 str. 40]
          Length = 891

 Score =  280 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 102/627 (16%), Positives = 212/627 (33%), Gaps = 53/627 (8%)

Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271
           +G      + Y   +  +    +R  ++V +     +     L       L+++E     
Sbjct: 138 RGQIVYANQAYARMTGATDADGIRPLDQVLASEPAASDAIYRLTNAVRDGLSAQEEVRIS 197

Query: 272 QEDFHTINLNQY--TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE-----NLTPE 324
                  N +      +     L+  ++     ++ +         ++            
Sbjct: 198 GGLSRGANGSLAPVWYRIKARALEGGAEFKGPLVAWQVADISEERAEQERFFQELQEAIN 257

Query: 325 TVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
            +D  P  FF     G + Y N +               +  L+ ++    ++       
Sbjct: 258 HLDHAPAGFFSANPAGRIIYLNATLAEWLGVDLTQFTPGSLTLNDIVAGSGMA------L 311

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
           +   +++      +     +      SLA+ F    +  +         I  +  +   +
Sbjct: 312 IKAVKAEPGTSRNTVIDLDLIKRNGQSLAVRFYHRVQTARDGMPGTTRTIVLDRAEGDDS 371

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF-GYPVEDILRKP--FTVF 500
                   ++      +    IA ++ EG  L TN     +F G    D + +       
Sbjct: 372 SVAQRSAEVRFTRFFNSAPMAIAAVDAEGHTLRTNARFLDIFSGVVDRDAIDRRVKLENV 431

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF----SSCYSL 556
           + +      N  LT   +          T+    EE+ +   +                +
Sbjct: 432 VHERDRETFNKALTAAFA-GQASISPVDTVLPGNEERHIRFYMSPVTDLGGEAAEEAAVI 490

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
           +  + +E K  +N+++ ++K+              ++H+    LTAII  S+++      
Sbjct: 491 SAVETTEQKALENQMAQSQKM-----QAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNH-- 543

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
              +P + +  N I ++ N    +V  LL  S+    +  L  E + L + +++ + ++ 
Sbjct: 544 RASDPSFPDIMN-IKQNANRAASLVRQLLAFSR----RQTLRPEVLDLTDVLAD-LRMLL 597

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT------ 730
                K I ++     ++  + ADL   +Q+A+N+  NA    P GGQI + T       
Sbjct: 598 ARLVGKDIELKIDHGRDLWPVKADLGQFEQVAVNLAVNARDAMPEGGQITLRTRNIPAAD 657

Query: 731 --------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
                       + V+  V DTG G+    LEK  +PF          G+GTGLGL +  
Sbjct: 658 AAKLHYRDLPEADYVVFEVEDTGTGIPADVLEKIFEPFFTTK----EVGKGTGLGLSMVY 713

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFP 809
            ++    G  Y  S   KGT  +I  P
Sbjct: 714 GIIKQTGGFIYCDSEVGKGTTFKIFLP 740



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/238 (11%), Positives = 66/238 (27%), Gaps = 7/238 (2%)

Query: 319 ENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
           ++L    +D  P    +    G + YAN ++  +T     D I     +  L   P  SD
Sbjct: 118 QDLAHSFMDTQPEGTVISDPRGQIVYANQAYARMTGATDADGIRPLDQV--LASEPAASD 175

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
                   +                 +    +   + +    +A +         +  + 
Sbjct: 176 AIYRLTNAVRDGLSAQEEVRISGGLSRGANGSLAPVWYRIKARALEGGAEFKGPLVAWQV 235

Query: 438 VDTRINKRKMEIEVMQLC-SI--LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
            D    + + E    +L  +I  L+    G    N  G I+  N  +++  G  +     
Sbjct: 236 ADISEERAEQERFFQELQEAINHLDHAPAGFFSANPAGRIIYLNATLAEWLGVDLTQFTP 295

Query: 495 KPFT-VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
              T   +   +   +   +           ++   +    +   +     ++     
Sbjct: 296 GSLTLNDIVAGSGMALIKAVKAEPGTSRNTVIDLDLIKRNGQSLAVRFYHRVQTARDG 353



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 48/420 (11%), Positives = 102/420 (24%), Gaps = 38/420 (9%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD--ILHIDPNNHIGDLLKRQNTWYGKT 147
           D  G +   ++   +  G      I   L  V        D    + + ++   +   + 
Sbjct: 136 DPRGQIVYANQAYARMTGATDADGI-RPLDQVLASEPAASDAIYRLTNAVRDGLSAQEEV 194

Query: 148 TL-----WPIEGTNLYVPIDLAALPIYSRNREFSG-FRGFGIVHVNRVDNDPRALGKRLD 201
            +         G+   V   + A  +     EF G    + +  ++    +     + L 
Sbjct: 195 RISGGLSRGANGSLAPVWYRIKARALEGGA-EFKGPLVAWQVADISEERAEQERFFQELQ 253

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR------MKNKVSSLTEYYAHKDDVLK 255
           +  +HL     G  S       I+   +    L           ++           ++K
Sbjct: 254 EAINHLDHAPAGFFSANPAGRIIYLNATLAEWLGVDLTQFTPGSLTLNDIVAGSGMALIK 313

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN--NSKESFEYLSHRNHPSLSA 313
             K    TS  + +                     T ++          L        S 
Sbjct: 314 AVKAEPGTSRNTVIDLDLIKRNGQSLAVRFYHRVQTARDGMPGTTRTIVLDRAEGDDSSV 373

Query: 314 YFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLT-KYKSVDDIEIAGGLSTLLD 371
                E       +  P+    V + G+    N  FL +       D I+    L  ++ 
Sbjct: 374 AQRSAEVRFTRFFNSAPMAIAAVDAEGHTLRTNARFLDIFSGVVDRDAIDRRVKLENVVH 433

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
                  N            +       L     N E  +     P              
Sbjct: 434 ERDRETFNKALTAAFAGQA-SISPVDTVL---PGNEERHIRFYMSPVTDLGGEAAEEAAV 489

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSI----------LEATSDGIAIINREGIILSTNRAV 481
               E  + +  + +M  +  ++ ++                 I + +    +L TN   
Sbjct: 490 ISAVETTEQKALENQM-AQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSD---LLLTNHRA 545



 Score = 48.5 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 45/134 (33%), Gaps = 12/134 (8%)

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY-LT 514
           S ++   +G  I +  G I+  N+A +++ G    D   +P    L     +    Y LT
Sbjct: 123 SFMDTQPEGTVISDPRGQIVYANQAYARMTGATDAD-GIRPLDQVLASEPAASDAIYRLT 181

Query: 515 EILSLDLRQTLEKITLG---STKEEKLLSLRIIIKKLPFSSC-------YSLTMHDISEW 564
             +   L    E    G         L  +   IK               +  + DISE 
Sbjct: 182 NAVRDGLSAQEEVRISGGLSRGANGSLAPVWYRIKARALEGGAEFKGPLVAWQVADISEE 241

Query: 565 KQEKNKLSHAKKIA 578
           + E+ +     + A
Sbjct: 242 RAEQERFFQELQEA 255


>gi|302805691|ref|XP_002984596.1| hypothetical protein SELMODRAFT_120617 [Selaginella moellendorffii]
 gi|300147578|gb|EFJ14241.1| hypothetical protein SELMODRAFT_120617 [Selaginella moellendorffii]
          Length = 468

 Score =  280 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 72/251 (28%), Positives = 131/251 (52%), Gaps = 11/251 (4%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E +    +L  ++  AE+ S  KS+FLA +SHEIRTP+ AIIG + +  +          
Sbjct: 12  ELELANKELQESQAAAEEASRAKSEFLANMSHEIRTPIHAIIGMASLALDTNL----TEE 67

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             E+ + + +S + +L IVN +LD++KIE+G++ L   P ++ + +S  + ++Q+ A +K
Sbjct: 68  QREHLDTVAQSADSLLHIVNTILDLAKIEAGRLELEHVPFNVCDLLSSTMKMLQVSARQK 127

Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI--IIS----TTHTSNE 735
            + +    +  +P+ ++ D   ++Q  LN++ NAI FT  G      +S           
Sbjct: 128 DLDMSWEVSAEVPQQLIGDAGRLQQCILNLVGNAIKFTQRGSVFLNHVSNDPQRREEEAV 187

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            V+  V+DTG+G++  + ++  K F Q   S      GTGLGL + + +V    G+ ++ 
Sbjct: 188 CVLFSVKDTGIGISQEKQKEVFKAFSQADTSITRLYGGTGLGLSIVERLVAMMGGRIWLE 247

Query: 796 STPAKGTLIEI 806
           S   KG+    
Sbjct: 248 SEAGKGSTFYF 258


>gi|251788450|ref|YP_003003171.1| hybrid sensory histidine kinase BarA [Dickeya zeae Ech1591]
 gi|247537071|gb|ACT05692.1| Hpt sensor hybrid histidine kinase [Dickeya zeae Ech1591]
          Length = 922

 Score =  280 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 88/332 (26%), Positives = 149/332 (44%), Gaps = 17/332 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           L  Y +   +  P    +       ++      L   +   +             +++ +
Sbjct: 191 LLAYRLMRDVTTPIRNMV-----ETVDRIRRGQLDSRVEGYMLGELDMLKNGINSMAMSL 245

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                          +D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 246 TAYHEEMQQNIDQATYDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTP 305

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+     Q           +Y   I+RS N +L+I+ND+LD SK+E+GK+ L  
Sbjct: 306 LNGVIGFT----RQTLKTQLTTTQKDYLQTIERSANNLLNIINDVLDFSKLEAGKLVLEN 361

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P SL   + E I L+   A+EK + +  +  +++P   + D   ++QI  N+L NAI F
Sbjct: 362 IPFSLHNTLDEVIMLLAHTAHEKGLELTLNIQHDVPEQFVGDPLRLQQIVTNLLGNAIKF 421

Query: 719 TPSGGQ-IIISTTHTSNEEV--ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T  G   I I      N +V   ++++DTG+G+   +  +  + F Q   S   +  GTG
Sbjct: 422 TEQGNIDIRIEKRKQENLQVLLEIQIKDTGIGIAEAQQTQLFQAFRQADTSISRQHGGTG 481

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           LGL + + +V    G     S P +GT     
Sbjct: 482 LGLVITQRLVREMGGDISFHSKPNQGTTFWCT 513


>gi|146284197|ref|YP_001174350.1| sensor histidine kinase/response regulator [Pseudomonas stutzeri
           A1501]
 gi|145572402|gb|ABP81508.1| sensor histidine kinase/response regulator [Pseudomonas stutzeri
           A1501]
          Length = 1170

 Score =  280 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 107/634 (16%), Positives = 230/634 (36%), Gaps = 55/634 (8%)

Query: 182 GIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS 241
           GI    R   +      R  +     ++ +   +     +  + ++++    +     + 
Sbjct: 131 GIAR--RSAGESIVEYVRTRRGLDLTNQRRTLLNEFIATERQLRAERTDTSEIVTTALIG 188

Query: 242 SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301
               +      +L       LT+  ++  E       +     K+ ++ T Q    ES  
Sbjct: 189 GFLLFSLIFSGLLVFLGRRDLTTLSATYSESLRKQQAHAEALEKQAWYRTGQTQLSESII 248

Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLL---LTKYKSVD 358
                   +L A      N     +D      +V   G L            L   +S++
Sbjct: 249 G-----ELALPALGQGVLNFLSRYIDAAVGALYVVQDGKLQRVAEYAYDPEHLQSARSLE 303

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
                 G + L       ++     + +  +       +  +  ++ +      +     
Sbjct: 304 VGTGLVGQAALERRMMALEDLPAGYLKVTSALGDTTPRAVLIVPVEDSG-----LLNGVI 358

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
           E     P     + +         +  +      +L  +L  T      +N E  +    
Sbjct: 359 ELGFLRPLREQDSELLRRIAPGIGSAIEAARYRQRLQKVLAETQQ----LNEELQVQ--- 411

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
               +      E++  +   +     + + M     E+   + +   +   L   +++  
Sbjct: 412 ---QEELRAANEELEEQSNALR---ESQTHMEEQQAELEQTNEQLAEQTEALARQRDQ-- 463

Query: 539 LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKK--IAEKESSHKSDFLARVSHEI 596
                                D    +  + +L   ++    ++ S +KS+FLA +SHE+
Sbjct: 464 --------------------MDEKNQRLNEAQLMLEQRADELQRASRYKSEFLANMSHEL 503

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTPL + +  ++++ +   G L +   +++A  I  +GN +L ++ND+LDISK+E+GK+ 
Sbjct: 504 RTPLNSSLILAKLLADNPDGNLSDD-QVQFARSIYSAGNDLLTLINDILDISKVEAGKLE 562

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNA 715
           +H E   L   V    +L    A EK +      A+++P  +  D + ++QI  N+L+NA
Sbjct: 563 VHPELTILSRLVDGMKNLFLPQAMEKALSFSVELADDLPPTLFTDRQRLEQILKNLLANA 622

Query: 716 IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
             FT  G  + +         +   VRDTG+G+   +     + F Q   +   R  GTG
Sbjct: 623 FKFTEKGS-VTLRVEPRDGGMLAFAVRDTGIGIAPEQQAAIFEAFRQADGTTNRRYGGTG 681

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           LGL +++ + +   G+  + S P  G+   ++ P
Sbjct: 682 LGLSISRELANLLGGQIEVQSAPGAGSTFTLVLP 715


>gi|15965635|ref|NP_385988.1| putative sensor histidine kinase transmembrane protein
           [Sinorhizobium meliloti 1021]
 gi|307314039|ref|ZP_07593652.1| integral membrane sensor signal transduction histidine kinase
           [Sinorhizobium meliloti BL225C]
 gi|307321216|ref|ZP_07600618.1| integral membrane sensor signal transduction histidine kinase
           [Sinorhizobium meliloti AK83]
 gi|15074816|emb|CAC46461.1| Putative sensor histidine kinase transmembrane protein
           [Sinorhizobium meliloti 1021]
 gi|306893118|gb|EFN23902.1| integral membrane sensor signal transduction histidine kinase
           [Sinorhizobium meliloti AK83]
 gi|306899161|gb|EFN29800.1| integral membrane sensor signal transduction histidine kinase
           [Sinorhizobium meliloti BL225C]
          Length = 511

 Score =  280 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 101/249 (40%), Positives = 154/249 (61%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I+E +  K+    A++ AE+ +  KS FLA +SHE+RTPL AI+GFSEV+  +  GPL N
Sbjct: 238 IAELEVAKSMSDEARRRAEEANLAKSRFLASMSHELRTPLNAILGFSEVMSTEVLGPLSN 297

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
           P Y EY   I RSG  +L+++N++LD+S+IE+GK  L  + V+L E V + I +VQL A 
Sbjct: 298 PTYKEYTLDIHRSGEHLLNLINEILDLSRIEAGKYELSEDAVNLAEIVEDCIGMVQLRAR 357

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
            K I I   F   +P + AD ++++Q+ LN+LSNA+ FTPSGG++ +    T+     L 
Sbjct: 358 GKNITIGHQFEQAMPSVWADEKAMRQVTLNLLSNAVKFTPSGGEVSVKVGWTAGGGQYLS 417

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           +RD G G+   E+   +  FGQ   + +   +GTGLGLP+ +A++  + G+F + S   +
Sbjct: 418 IRDNGPGIPEEEIPIVLSAFGQGSIAIKSAEQGTGLGLPIVQAILAKHGGQFILRSKLRE 477

Query: 801 GTLIEIIFP 809
           GT    I P
Sbjct: 478 GTEAIAILP 486


>gi|76787305|ref|YP_330515.1| sensor histidine kinase [Streptococcus agalactiae A909]
 gi|77405024|ref|ZP_00782124.1| sensor histidine kinase [Streptococcus agalactiae H36B]
 gi|76562362|gb|ABA44946.1| sensor histidine kinase [Streptococcus agalactiae A909]
 gi|77176318|gb|EAO79087.1| sensor histidine kinase [Streptococcus agalactiae H36B]
          Length = 551

 Score =  280 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 74/385 (19%), Positives = 169/385 (43%), Gaps = 32/385 (8%)

Query: 426 ENMPQNGIEPEDVDTRINKRKM--EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           E +       +    +I  +K+  +    +  +I+    +G+ +++ +  I+S N    K
Sbjct: 194 EEITPLLRRLDSHQAKIQHQKLLLQKRQKEFDTIISKIKEGMILLDDQARIVSINAEALK 253

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           LF    +      +           +   L +++   L+   ++  +G       + +R 
Sbjct: 254 LFQINDD------WHGRFMMEVSRDL--TLKDLIDQGLKGKKKEANIGIENNHYRVLVRP 305

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
                   +   + + D+++  Q +                + +F A VSHE++TPL  I
Sbjct: 306 TTDNNR-VTGLVVLLFDVTDQLQME--------------QLQREFTANVSHELKTPLHVI 350

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
            G+SE++ NQ    + N    ++A  I +    ++ +V D++++S ++  +  L  E V+
Sbjct: 351 SGYSELLANQM---VPNEEVPQFAAKIHKESERLVKLVEDIINLSHLDEQE-KLPQETVN 406

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
           L +   + +  +Q  A++K I I  +    I  +  +   +  +  N+  NAI +    G
Sbjct: 407 LYDLTQKVLEGLQAKADKKHIQINFNGEEAI--LRGNPVLLNSLVYNLCDNAITYNHEKG 464

Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
           Q+ ++  ++ +  + L V DTG+G+   + ++  + F ++  S+     GTGLGL + K+
Sbjct: 465 QVNVTLKNSPD-TITLEVSDTGLGIAEKDKKRIFERFYRVDKSRSKIVGGTGLGLSIVKS 523

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIF 808
            +D + G   + S   +GT + ++ 
Sbjct: 524 ALDFHNGSIKVDSHLGQGTTMTVLL 548


>gi|95931127|ref|ZP_01313852.1| multi-sensor signal transduction histidine kinase [Desulfuromonas
           acetoxidans DSM 684]
 gi|95132817|gb|EAT14491.1| multi-sensor signal transduction histidine kinase [Desulfuromonas
           acetoxidans DSM 684]
          Length = 588

 Score =  280 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 89/406 (21%), Positives = 177/406 (43%), Gaps = 32/406 (7%)

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKR--KMEIEVMQLCSILEATSDGIAIINREGI 473
           +P          +         +     +    ++ E  +   I+ + SDG+ + + +G 
Sbjct: 207 VPVLFGGLSGALIGMYLTRNRRLLIAQQEAGTFLQQEKERTDDIITSISDGLLVTDSDGR 266

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
           +   N A  +L   P  +++ +  T  L+Q +    +++L         Q        +T
Sbjct: 267 VELVNPAAEELLDIPAANLIGQTLTAILQQASVEDHSNFLKPGNIGHSAQ-----IKLNT 321

Query: 534 KEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
           ++  L ++      +           L +HD +E                +    KS+FL
Sbjct: 322 QDGSLRTVHARTAAVHNDQRCSGEIVLLLHDNTE--------------EHRIDRMKSEFL 367

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
           +  +H ++TP+TAI G+SE++ +Q    L N    E+  YI      +  ++++LLDIS+
Sbjct: 368 STATHNLKTPITAITGYSELLMSQ--DQLSNDEQQEFLAYIHDKAWQLNKLIDNLLDISR 425

Query: 650 IESGK-MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIA 708
           +ESG+ + L    V     ++E  +       + R      F      +  DL  +  + 
Sbjct: 426 VESGREVRLEKSDVKAQTLINEIEAFCDSQ--QTRCEFHDQFEQTDSLLYIDLSKIVLVM 483

Query: 709 LNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
            N++SNAI F+P GG+I + T + +     +++ D G+GM++ E  +    F +   S+ 
Sbjct: 484 ENLISNAIKFSPGGGRISL-TGNKTGNSYEIKITDEGIGMSDDECCQVFDRFYRADVSES 542

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
              +G GLGL L K +V+A+ G+ ++ S P +GT +    P+ + +
Sbjct: 543 -APQGFGLGLTLVKQLVEAHGGEVHVHSIPRQGTTVSFQLPIRNGA 587



 Score = 37.7 bits (86), Expect = 7.9,   Method: Composition-based stats.
 Identities = 6/34 (17%), Positives = 15/34 (44%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS 122
            D+ G ++ ++    + +   A  +IG  L  + 
Sbjct: 261 TDSDGRVELVNPAAEELLDIPAANLIGQTLTAIL 294


>gi|22538096|ref|NP_688947.1| sensor histidine kinase [Streptococcus agalactiae 2603V/R]
 gi|77412888|ref|ZP_00789092.1| sensor histidine kinase [Streptococcus agalactiae 515]
 gi|22535002|gb|AAN00820.1|AE014280_12 sensor histidine kinase [Streptococcus agalactiae 2603V/R]
 gi|77161028|gb|EAO72135.1| sensor histidine kinase [Streptococcus agalactiae 515]
          Length = 551

 Score =  280 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 74/385 (19%), Positives = 169/385 (43%), Gaps = 32/385 (8%)

Query: 426 ENMPQNGIEPEDVDTRINKRKM--EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           E +       +    +I  +K+  +    +  +I+    +G+ +++ +  I+S N    K
Sbjct: 194 EEITPLLRRLDSHQAKIQHQKLLLQKRQKEFDTIISKIKEGMILLDDQARIVSINAEALK 253

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           LF    +      +           +   L +++   L+   ++  +G       + +R 
Sbjct: 254 LFQINDD------WHGRFMMEVSRDL--TLKDLIDQGLKGKKKEANIGIENNHYRVLVRP 305

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
                   +   + + D+++  Q +                + +F A VSHE++TPL  I
Sbjct: 306 TTDNNR-VTGLVVLLFDVTDQLQME--------------QLQREFTANVSHELKTPLHVI 350

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
            G+SE++ NQ    + N    ++A  I +    ++ +V D++++S ++  +  L  E V+
Sbjct: 351 SGYSELLANQM---VPNEEVPQFAAKIHKESERLVKLVEDIINLSHLDEQE-KLPQETVN 406

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
           L +   + +  +Q  A++K I I  +    I  +  +   +  +  N+  NAI +    G
Sbjct: 407 LYDLTQKVLEGLQAKADKKHIQINFNGEEAI--LRGNPVLLNSLVYNLCDNAITYNHEKG 464

Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
           Q+ ++  ++ +  + L V DTG+G+   + ++  + F ++  S+     GTGLGL + K+
Sbjct: 465 QVNVTLKNSPD-TITLEVSDTGLGIAEKDKKRIFERFYRVDKSRSKIVGGTGLGLSIVKS 523

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIF 808
            +D + G   + S   +GT + ++ 
Sbjct: 524 ALDFHNGSIKVDSHLGQGTTMTVLL 548


>gi|312889647|ref|ZP_07749196.1| multi-sensor signal transduction histidine kinase [Mucilaginibacter
           paludis DSM 18603]
 gi|311297869|gb|EFQ74989.1| multi-sensor signal transduction histidine kinase [Mucilaginibacter
           paludis DSM 18603]
          Length = 656

 Score =  280 bits (716), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 97/669 (14%), Positives = 223/669 (33%), Gaps = 74/669 (11%)

Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254
                L   F  + +    H    +  +   + +    +   +    S+           
Sbjct: 8   QELSTLQSIFEGIDDAIFCHDLDMRITHWNPAAEQLFGYSHEEIIDESVYLLIPQDRQQE 67

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
           K +    +         +    T    +         +++   +                
Sbjct: 68  KMDIMRDIMEGRRIGHFKTIRRTREGVEIPVSITISPIRDQEGQVTGSSQIARSIIEENA 127

Query: 315 FDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
            +E +      V          S  G +   N     +  Y   + I     +S L+   
Sbjct: 128 AEEKQARLAAIVASSDDAIVGKSLQGIITSWNIGAEKMFGYTEQEAIGQ--HISLLIPPE 185

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQW-NRENSLAMTFIPFEKANQFPENMPQNG 432
           +L++ +    ++        +       TI+       L ++       N+  E +  + 
Sbjct: 186 RLNEEDI---IIGNIRAGKKVD---HFQTIRRTKGGQQLHISLTVSPILNKAGEIIGASK 239

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATS-----DGIAIINREGIILSTNRAVSKLFG- 486
           I       +  +R +   + ++  IL + S     D    ++ + I+     A ++L G 
Sbjct: 240 IARNITAQKEAERSVAKSMERME-ILNSISKSINED----LDLQHILQRVTDATTRLTGA 294

Query: 487 ------YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT-LEKITLGSTKE---- 535
                 Y   D   + + ++     P           +  +         +    +    
Sbjct: 295 DFGAFFYNRVDQGGESYWLYTISGAPRAAFENFPMPRNTAVFHPTFSGEDVVRVDDITKD 354

Query: 536 --------------EKLLSLRIIIKKLPFSSCYS-----------LTMHD------ISEW 564
                           L  +  +   +   S                  +      ++  
Sbjct: 355 PRYGKNSPYFGMPKGHLPVVSYLAVPVITHSGVVIGGLFFGHKQAGIFKEEHEDLVVTVA 414

Query: 565 KQEKNKLSHAK--KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
            Q    + +++  +  +  S+ K +F+A  SHE++TPLT++ GF ++++      + +  
Sbjct: 415 SQAAVAIDNSRLFEEVKDLSNKKDEFIALASHELKTPLTSMSGFLQILERT----VPDGI 470

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
              +A    +    + ++VNDL DISKI++GK+ L+FEP  L + + E     +      
Sbjct: 471 AKSFAEKALKQLAKLNELVNDLFDISKIQAGKLQLNFEPFDLSDLLDEITDTFEQTHPHY 530

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
            + +    A+    +  D   ++Q+  N+L NA+ + P   ++ +     +  EV + V+
Sbjct: 531 NLKM---AADGELLVSGDKMRLEQVLTNLLGNAVKYAPDAREVSM-IAIRTGNEVRISVK 586

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G G+     +     F ++   Q+ +  G GLGL ++K ++D + G+ ++ STP  G 
Sbjct: 587 DQGPGILPENQQHIFSQFYRVKE-QERKTSGLGLGLYISKDIIDRHGGRIWVESTPGHGA 645

Query: 803 LIEIIFPLY 811
                 P +
Sbjct: 646 TFTFSLPAF 654



 Score =  113 bits (284), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 34/277 (12%), Positives = 93/277 (33%), Gaps = 18/277 (6%)

Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
                 +  +      +      F +     + + NP+   L  Y   + I+     S  
Sbjct: 2   TRLQHSQELSTLQSIFEGIDDAIFCHDLDMRITHWNPAAEQLFGYSHEEIIDE----SVY 57

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
           L  P+      +  +      R            +      + ++       +Q  +   
Sbjct: 58  LLIPQDRQQEKMDIMRDIMEGRRIGHFKTIR---RTREGVEIPVSITISPIRDQEGQVTG 114

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
            + I    ++    +   E +  +L +I+ ++ D I   + +GII S N    K+FGY  
Sbjct: 115 SSQIARSIIE----ENAAEEKQARLAAIVASSDDAIVGKSLQGIITSWNIGAEKMFGYTE 170

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
           ++ + +  ++ +     +  +  +  I +          T+  TK  + L + + +  + 
Sbjct: 171 QEAIGQHISLLIPPERLNEEDIIIGNIRAGKK--VDHFQTIRRTKGGQQLHISLTVSPIL 228

Query: 550 FSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKES 582
             +   +       +I+  K+ +  ++ + +  E  +
Sbjct: 229 NKAGEIIGASKIARNITAQKEAERSVAKSMERMEILN 265



 Score = 62.7 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/272 (9%), Positives = 69/272 (25%), Gaps = 10/272 (3%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD-LLKRQNTWYGKTT 148
           D    +   +    +  G    ++I   +  +           I   +++ +   + KT 
Sbjct: 28  DLDMRITHWNPAAEQLFGYSHEEIIDESVYLLIPQDRQQEKMDIMRDIMEGRRIGHFKTI 87

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               EG  + +P+ +   PI  +  + +G     I      +N       RL    +   
Sbjct: 88  RRTREG--VEIPVSITISPIRDQEGQVTGSSQ--IARSIIEENAAEEKQARLAAIVASSD 143

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           +   G S            +    +   +     ++     +    +      + + +  
Sbjct: 144 DAIVGKSLQGIITSWNIGAEKMFGYTEQEAIGQHISLLIPPERLNEEDIIIGNIRAGKKV 203

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
              Q    T    Q         + N + E         + +     +     + E ++ 
Sbjct: 204 DHFQTIRRTKGGQQLHISLTVSPILNKAGEIIGASKIARNITAQKEAERSVAKSMERMEI 263

Query: 329 CPIPFF-----VYSHGNLFYANPSFLLLTKYK 355
                      +     L     +   LT   
Sbjct: 264 LNSISKSINEDLDLQHILQRVTDATTRLTGAD 295


>gi|262382720|ref|ZP_06075857.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
 gi|262295598|gb|EEY83529.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
          Length = 767

 Score =  280 bits (716), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 130/747 (17%), Positives = 257/747 (34%), Gaps = 53/747 (7%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           DAHG L+ I++   +  G             V +I+++  +  +   L  +    G+   
Sbjct: 46  DAHGVLRSINDHALRMYGVD-------DRTSVVNIVNLYKSPFVDSELLARIQ-SGEDIS 97

Query: 150 WPIEGTNLYVPID--------------LAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA 195
              E     V  D              +  +PI+SR +   G     I+  N + +    
Sbjct: 98  LEFEYDFDRVNKDAYYSSHNKDTMIYGVKVIPIWSRKKHLIGH----ILLANDMTSVKEV 153

Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK---VSSLTEYYAHKDD 252
             +  + K +    +K  + +      +             K      + L   +     
Sbjct: 154 EFRTEESKKNLEMAMKAANMASWVYDVNKKVFNPLYGLTVAKKNMPMEAVLDILHPQDRA 213

Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
            L      L+ +E         F+      Y   +    L    +   + +  +   +  
Sbjct: 214 PLIRLFSQLIGNEIEQGQMTLRFYNEQEEMYRYYESRMRLSTEHRGKLQIIGTQMDITER 273

Query: 313 AYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVD-DIEIAGGLSTLLD 371
               +         D       +      F  N            D   +    +S  +D
Sbjct: 274 LQMAKKAQDLIAKRDLAMKVSNIVHWD--FDVNSQKFESYNDPINDYVSDRLLTVSEYMD 331

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE-KANQFPENMPQ 430
                D +     M        +  +          E      F+      ++  + +  
Sbjct: 332 VIYPEDRSVFYDAMQSLIAGKNVTINFTCRIQTKYDETWQYCDFMGVPFDQDENGDIIRY 391

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPV 489
            G        +   R+++    ++    +         + +     + N  ++    Y  
Sbjct: 392 TGFRQNIPKIQQLNRELKERNYKIELSFKTVGMSYWDFDVKSLKFSAFNDPINDF--YSE 449

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK-EEKLLSLRIIIKKL 548
           + I  + +      +    +  Y+  +    + +         TK +++  +L +   ++
Sbjct: 450 KTITPEDYLNATHPDDVVFVRKYMEHMFR-GIDKDFNVKYRSKTKWDDEWQTLLVTGIQV 508

Query: 549 PFSS-----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
                     Y+    + ++W++   +L   K+ AE     KS FLA +SHEIRTPL AI
Sbjct: 509 ERDKEGHVTRYTGITINNTKWEKMIQQLKELKEKAELSDRLKSAFLANMSHEIRTPLNAI 568

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +GFSE++              EY N I  +  L+L ++ND+LD+SKIESG +    E  +
Sbjct: 569 VGFSELM----VTCDDPEEKKEYINIIQSNNELLLRLINDILDLSKIESGIIERRKENFN 624

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
           L +  +E    +Q       + +R    N+   +L D   +KQ+ +N L+NA+  T SG 
Sbjct: 625 LAKVCNELFVTIQAKMTNPNVELRLDGPNSECWVLLDRNRLKQVWMNFLTNAVKCTKSG- 683

Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
            I +         + + V DTG+G+ +   +K    F ++        +GTGLGL +++A
Sbjct: 684 YIKMGYGIEREG-LRIYVEDTGIGIPDDLHDKVFTRFEKL----NEFSQGTGLGLTISRA 738

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFPL 810
           +V+A  G+    S    G+      PL
Sbjct: 739 IVEAAGGEVGFTSKLGVGSTFWAWLPL 765



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/314 (9%), Positives = 86/314 (27%), Gaps = 35/314 (11%)

Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY-ANPSFLLLTKY 354
            + S E         +S   +E    T       P+   +Y    +    N   L +   
Sbjct: 5   EENSQENDDVIIEKEISKLIEEQRLFTESIYACLPVGIEIYDAHGVLRSINDHALRMYGV 64

Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL--------HTIQWN 406
                +     +  L  +P +        ++        I+                  +
Sbjct: 65  DDRTSVVN---IVNLYKSPFV-----DSELLARIQSGEDISLEFEYDFDRVNKDAYYSSH 116

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
            ++++          ++    +    +  +    +  + + E     L   ++A +    
Sbjct: 117 NKDTMIYGVKVIPIWSRKKHLIGHILLANDMTSVKEVEFRTEESKKNLEMAMKAANMASW 176

Query: 467 IINREGIILSTNRAVSKLFGYP--VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
           + +    +   N     L+G     +++  +     L     + +    ++++  ++ Q 
Sbjct: 177 VYDVNKKV--FNP----LYGLTVAKKNMPMEAVLDILHPQDRAPLIRLFSQLIGNEIEQG 230

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEK 580
            +       ++E++        +L            T  DI+E  Q   K        + 
Sbjct: 231 -QMTLRFYNEQEEMYRYYESRMRLSTEHRGKLQIIGTQMDITERLQMAKKAQDLIAKRDL 289

Query: 581 ESSHKSDFLARVSH 594
                   ++ + H
Sbjct: 290 AMK-----VSNIVH 298


>gi|168000947|ref|XP_001753177.1| cytokinin receptor AtCKI2-like protein [Physcomitrella patens
           subsp. patens]
 gi|162695876|gb|EDQ82218.1| cytokinin receptor AtCKI2-like protein [Physcomitrella patens
           subsp. patens]
          Length = 970

 Score =  280 bits (716), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 93/622 (14%), Positives = 187/622 (30%), Gaps = 69/622 (11%)

Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291
               +                 +  + +P   +   S    E                  
Sbjct: 14  FARPVTPGSGGRLTTDLPATGAIGKQSFPKEGTFIDSDHFMELLERSGSGDSHLASLMRL 73

Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLL 350
            ++    +   L  +     SA  +     T    +    P +    G  L   +P +  
Sbjct: 74  YEDRQVNAVNLLKQQLETLNSARLEAERRQTQIMEENFYEPMYAVGEGSTLSEDSPRYEH 133

Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
                         G  T     +       +               AR +         
Sbjct: 134 YLGDDGPGSWSSVPGSDTCSLEMEGDSFGPAEYWRDR----------ARSYAKLLTDSIR 183

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470
                +                IE            +   + +           I   + 
Sbjct: 184 REEQLVEKLNEYASMPPSNWQPIEELRTHLHRFDNFLRFSLRK-------APIVIGHQDN 236

Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530
           +        A   L     E+++ K        +  + +  +  E++     +  E    
Sbjct: 237 DLRHRFIYNAFPTL---SEEEVIGKTDLEIFRGSGVAEVMDFKREVIRKGRPEKREIHFN 293

Query: 531 GSTKEEKLLSLRIIIK--KLPFSSCYSLTMHDISEW-----------------KQEKNKL 571
                EK   + +     +   +   +    D+SE                  K  + +L
Sbjct: 294 TDLFGEKTFLVAVEPVLSQSGEAMGINYVAMDVSEQVDKRERISRLREQVAVQKAMEAEL 353

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
                I E+    K   LA +SHEIR+PL+ ++  +EV+   +     +    +  + + 
Sbjct: 354 HKTIHITEEAMRAK-QMLATMSHEIRSPLSGVVSMAEVLATTQL----DEEQRQLVDVMV 408

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
            SG+LVL ++ND+LD+SK++SG M    +     E V   + +       K +++     
Sbjct: 409 SSGDLVLQLINDILDLSKVQSGAMKFEAKKFRPREVVKHVLQMALANTQSKNLILEGRIY 468

Query: 692 NNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTT-------------------- 730
           +++P  ++ D+  ++Q+  N++ NAI FT  G  + IS                      
Sbjct: 469 DDVPLEVIGDVLRIRQVFTNLVGNAIKFTHEG-NVTISVRVVPPPPPSIERAAKNEPAVD 527

Query: 731 --HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                   ++  V D+G+G+    L    + + Q+  +   +  GTGLGL + K +V+  
Sbjct: 528 EGVEDTVWLLCEVSDSGIGIPESALPTLFEKYTQVSATHARKYGGTGLGLAICKNLVELM 587

Query: 789 MGKFYIFSTPAKGTLIEIIFPL 810
            G   + S    G+      PL
Sbjct: 588 GGNLTVVSKENHGSTFSFALPL 609


>gi|91774843|ref|YP_544599.1| multi-sensor signal transduction histidine kinase [Methylobacillus
           flagellatus KT]
 gi|91708830|gb|ABE48758.1| multi-sensor signal transduction histidine kinase [Methylobacillus
           flagellatus KT]
          Length = 442

 Score =  280 bits (716), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 77/380 (20%), Positives = 147/380 (38%), Gaps = 29/380 (7%)

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
            + I  E      ++ ++   + +      A  DG+ ++N    I   N       G  +
Sbjct: 76  FSAIYYEKRRHHRSQAQISSALDRFRHAASALPDGVVLLNGNDQIEWCNPTAESQLGLSM 135

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
                +P T  +          YL      +  +     T+G+T E +L+   I      
Sbjct: 136 RQDAGQPITYLVRPTD---FIQYLQAQNYSEPIKLKSWRTIGATLEIQLVPFGI------ 186

Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
             +   L   D+S  ++ +                + DF+A VSHE+RTPLT + GF E 
Sbjct: 187 --NQKLLISRDVSHMEKLET--------------MRRDFIANVSHELRTPLTVVGGFLET 230

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           + +             Y   +      +  ++ DLL +S++E+         + L   ++
Sbjct: 231 LMDMEGAV--PESTRAYFGMMQEQTGRMRRLIEDLLTLSQLENSPEAPQETEIDLGTLLN 288

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
             +      +  K   I          I      +     N++SNA+ +TP GG+I +  
Sbjct: 289 MLLHEGVSLSQGKH-EITLEPVEPGLFIKGATEELHSALGNLVSNAVRYTPQGGKINLKL 347

Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
                 +++  VRDTG+G+    +++  + F ++  S+     GTGLGL + K ++  + 
Sbjct: 348 FLR-GNDIVFSVRDTGIGIEQQHIDRLTERFYRVDRSRSRETGGTGLGLSIVKHILTRHQ 406

Query: 790 GKFYIFSTPAKGTLIEIIFP 809
           G+  I S   KG++   + P
Sbjct: 407 GRLEIESEAGKGSIFSAVLP 426


>gi|331701702|ref|YP_004398661.1| multi-sensor signal transduction histidine kinase [Lactobacillus
           buchneri NRRL B-30929]
 gi|329129045|gb|AEB73598.1| multi-sensor signal transduction histidine kinase [Lactobacillus
           buchneri NRRL B-30929]
          Length = 463

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 85/412 (20%), Positives = 173/412 (41%), Gaps = 31/412 (7%)

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469
                 +P       P     + +       +   + +     +L +IL +   G+ +I+
Sbjct: 75  VHHQPAVPLFVEPDNPLKGVADQLNELQSRQQDEGKSIRNSNAELITILSSLPVGVMVID 134

Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL--DLRQTLEK 527
               ++  N  +S + G        +     +   T  + N+ L  ++    D  ++ ++
Sbjct: 135 STHDVIFANHKMSVMLG--------RDILTQVHPYTQDIRNYQLLSLIENVYDSHKSQQE 186

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
                          ++  +L       + M+DIS+    K                + D
Sbjct: 187 EIQSVGATSVTWDTSVVFNQLENDFHILVIMYDISDIINVK--------------QMQID 232

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           FL   SHE++TP+TAI GF++ +             +E+   ID+  + +  +V D+L I
Sbjct: 233 FLRNASHELKTPITAISGFTKTLLGGAMD--DKKSLVEFLKIIDQQSDQLASLVQDVLTI 290

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707
           S I++G  N H++P++L + +   ++  Q       + I      ++  ++AD  ++ +I
Sbjct: 291 SHIQNGT-NYHYKPLALHDFIDAELASYQSMIQGNHVAIHNQVPEHV-EVIADTTTLTRI 348

Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
             N++SNA+ +    G++ I T   ++    L V DTG+G+   ++ +  + F +  +S+
Sbjct: 349 LRNLVSNAVKYNRPNGEVNI-TYSDNDSYWQLHVSDTGIGIAQKDISRLFERFYRADDSR 407

Query: 768 QI-RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY-DTSHPH 817
              +  GTGLGL + K MVDA  G   + S    G+   + FP+  D   P+
Sbjct: 408 TKQKVSGTGLGLSIVKEMVDAVGGTIDVKSQRGVGSTFTVNFPIVKDRDQPN 459


>gi|320158979|ref|YP_004191357.1| CheY-like receiver [Vibrio vulnificus MO6-24/O]
 gi|319934291|gb|ADV89154.1| CheY-like receiver [Vibrio vulnificus MO6-24/O]
          Length = 881

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 88/258 (34%), Positives = 135/258 (52%), Gaps = 15/258 (5%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I E +Q+  ++ HAK+ A   +  KS FLA +SHEIRTPL  IIG +E++          
Sbjct: 350 IDEKQQQMVEIIHAKESAISANRAKSVFLANMSHEIRTPLNGIIGMTEILSQSELSS--- 406

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
            +  E    ID S   +L ++ND+LD+SKIESG +N+  +   + E V +A++L Q  A 
Sbjct: 407 -QQKEILGDIDTSSQSLLILLNDILDLSKIESGNLNISLQEADIRETVYQAMTLFQSKAT 465

Query: 681 EKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIIST-------THT 732
            K I +  +   +IP +++AD   +KQ+  N++ NAI FT  G    IST        H 
Sbjct: 466 SKNIELHITMGEDIPAKVMADDHRIKQVLTNLVGNAIKFTKEG---YISTFVNYQADEHD 522

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
               +  +V DTG+G+   +LE   +PF Q  +S   +  GTGLGL + + +V    G+ 
Sbjct: 523 HQGYLTFKVTDTGIGIDQAKLETIFEPFTQEDDSITRQFGGTGLGLAICRQLVAMMGGEL 582

Query: 793 YIFSTPAKGTLIEIIFPL 810
              ST   G+      P+
Sbjct: 583 TATSTKGLGSCFSFTIPV 600


>gi|295690287|ref|YP_003593980.1| integral membrane sensor hybrid histidine kinase [Caulobacter
           segnis ATCC 21756]
 gi|295432190|gb|ADG11362.1| integral membrane sensor hybrid histidine kinase [Caulobacter
           segnis ATCC 21756]
          Length = 672

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 76/260 (29%), Positives = 141/260 (54%), Gaps = 12/260 (4%)

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
            +    +  AE+ +  K+DFLA +SHE+RTPLTA++GF+++++ Q   P  +     Y  
Sbjct: 287 AQRRRLQAAAEEAAHVKADFLANMSHELRTPLTAVLGFAQLVERQ---PELSAETRAYVQ 343

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            +  +G  +   +ND+LD SK+E+G++++  +P+S+ E   EA+ +    A EK +L+R 
Sbjct: 344 RVTSAGKALRATINDILDFSKLEAGQVDIKPQPMSVAELTREAVDMFAAQAREKGVLLRL 403

Query: 689 SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN-EEVILRVRDTGV 746
           +  +++P  I AD   ++Q+ LN++ NA+ FT  G +I +     +  + ++  V DTG 
Sbjct: 404 ADLSDLPLLIEADPDRLRQVLLNLIGNAVKFTEVG-EIAVQARLDARADHIVFEVSDTGP 462

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           GM+  + ++  + F Q+      +  GTGLGL + K +V+A  G   + S   +G+    
Sbjct: 463 GMSADQSKRLFQRFSQVDAGAARKHGGTGLGLAICKGLVEAMGGSIGVDSRQGQGSRFWF 522

Query: 807 IF------PLYDTSHPHDCI 820
                   P  + S P + +
Sbjct: 523 TIPAILAEPASEPSTPAEVV 542


>gi|289423124|ref|ZP_06424939.1| two-component sensor histidine kinase [Peptostreptococcus
           anaerobius 653-L]
 gi|289156455|gb|EFD05105.1| two-component sensor histidine kinase [Peptostreptococcus
           anaerobius 653-L]
          Length = 435

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 78/367 (21%), Positives = 167/367 (45%), Gaps = 27/367 (7%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           +++ +  QL +I+++ ++GI +++    I   N+    L G   + I+       ++   
Sbjct: 80  EVQSKNDQLDAIIKSVTNGILVVDINKKIYLANKEAKLLLGCDSQAIVEG--EYVIDVIR 137

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SLTMHDI 561
              +  +L  + ++ +  ++ K      +  ++  ++I   ++           + + D+
Sbjct: 138 DGGLKDFL--VYNIGINYSITKEL--KVEGNRIYRVKIDPVRMQDIDNLSISTVVNIEDV 193

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           +E ++ +N               + DF A VSHE++TPLT+I GF E +K++    +   
Sbjct: 194 TEMRKLENV--------------RRDFAANVSHELKTPLTSIQGFVETLKSKDED-ISPE 238

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
               + + I+     +  ++ND+L IS IE G++ L  E  S+ E       L+   A  
Sbjct: 239 VRKRFLDIIENESRRLTILINDILLISSIE-GQVELTKEEFSIREVSEYVGDLLNEKAER 297

Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
             + +   ++N    I       K + +N+++N I +   GG++ I      +  ++L +
Sbjct: 298 YSVSVNFDYSNIDDLIYTQKEYFKDLLINLVTNGIKYNQKGGKVEIKYR-QDSTRLVLEI 356

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            D G+G+   +L++  + F ++  S+    EGTGLGL + K +V +   K ++ S    G
Sbjct: 357 EDNGIGIDKDDLDRIFERFYRVSRSRSQNIEGTGLGLAIVKHIVRSLDAKIFVESELGLG 416

Query: 802 TLIEIIF 808
           T   I F
Sbjct: 417 TKFTIEF 423


>gi|256828778|ref|YP_003157506.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfomicrobium baculatum DSM 4028]
 gi|256577954|gb|ACU89090.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfomicrobium baculatum DSM 4028]
          Length = 683

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 86/435 (19%), Positives = 166/435 (38%), Gaps = 27/435 (6%)

Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
                 R       +   +  T + + K          +         R+ +++++   M
Sbjct: 244 HFDEQGRKSLKSKGKTGQVCATCLFYRKREGDEVIQLADSFMSMVWSIRLYRKRLQESEM 303

Query: 453 QLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
           +  S+ ++  D I +++     IL  N    +L+ Y   ++L   F + L  +      +
Sbjct: 304 KYRSLFDSGPDPIFVVDCNTDRILDANPRAEELYEYSKGELLGVSF-MVLGHDQVRECLN 362

Query: 512 YLTEILSLDLRQTLEKITLGSTKEE-KLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570
            L E  +        K+      E    +++         +    + + DI+E  ++  +
Sbjct: 363 SLNEAQTNSGCVYYPKVLHYKKGERPFYVNMHACPISYGGTHAMIVAVTDITEMMEKDAQ 422

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI--KNQRFGPLGNPRYIEYAN 628
           L  A K+         +  A ++HEI  PL AI   SE +    ++   +   +  + A 
Sbjct: 423 LVQAAKMKT-----LGEMSAGIAHEINQPLNAIKMGSEYLNLLIEQNRQVTETQIRDMAT 477

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I +  +   DI+N+L    K    K  L  E V ++E +   +S++    + +RI IR 
Sbjct: 478 EISQQVDRATDIINNLRAFGK----KSGLVMERVDMNEPIRGVLSIIGRQFSIQRITIRL 533

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSG--------GQIIISTTHTSNEEVILR 740
                +P I      ++Q+  N+L+NA               G I++ T +T +  V   
Sbjct: 534 ELGEGLPYIKGHNNRLQQVFFNLLNNARDAIQEKMENEPGMWGDILVRT-YTQDGRVFAS 592

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
             D G G+ +    K  +PF     +    G+G GLGL +   +V    G   I S P +
Sbjct: 593 FADNGPGIADSVRNKIFEPFFTTKQT----GKGMGLGLAITYGIVRDYGGIITIDSQPGQ 648

Query: 801 GTLIEIIFPLYDTSH 815
           GT   + FP  ++  
Sbjct: 649 GTTFILSFPSVESHQ 663



 Score = 41.6 bits (96), Expect = 0.51,   Method: Composition-based stats.
 Identities = 23/157 (14%), Positives = 51/157 (32%), Gaps = 13/157 (8%)

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
                E E       D  P P FV       +  ANP    L +Y   + + ++  +   
Sbjct: 295 RKRLQESEMKYRSLFDSGPDPIFVVDCNTDRILDANPRAEELYEYSKGELLGVSFMV--- 351

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
           L   ++ +   +  +   +++  C+     LH      E    +       +      M 
Sbjct: 352 LGHDQVREC--LNSLNEAQTNSGCVYYPKVLH--YKKGERPFYVNMHACPISYGGTHAM- 406

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
                 +  +      ++ ++  ++ ++ E  S GIA
Sbjct: 407 -IVAVTDITEMMEKDAQL-VQAAKMKTLGE-MSAGIA 440


>gi|121605276|ref|YP_982605.1| multi-sensor hybrid histidine kinase [Polaromonas naphthalenivorans
           CJ2]
 gi|120594245|gb|ABM37684.1| multi-sensor hybrid histidine kinase [Polaromonas naphthalenivorans
           CJ2]
          Length = 1124

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 112/656 (17%), Positives = 216/656 (32%), Gaps = 53/656 (8%)

Query: 191 NDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK 250
            +    G    +    L E       V        + Q P       +  + L E     
Sbjct: 77  AEKEIAGVHYLRPLRSLQEQVARSRLVAAAYRSGQADQRPELVRVQASIKAGLAELDQID 136

Query: 251 DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310
             +    +                   +++         G LQ++      ++   ++  
Sbjct: 137 AQLGGELESTAKLGIIKENALFLSRRLLDVPPVNTDALHGMLQDDISTLVAHVGDISNLI 196

Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
           L    D    L    + K P    +     L     S   + K            L  L 
Sbjct: 197 LDPDLDSYY-LMEAVLLKLPDAADLLLQARLLVQARSQAPMQKLPLRAKEGENADLIRLS 255

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
              + + +           +        RL     +   S          A +       
Sbjct: 256 GLIESNLSRTQYGAQTAFKNEKTGQLKLRLT----DAVQSYNQAIKDAVAALRSLTEPEA 311

Query: 431 NGIEPEDVDTRINKRKM------EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
                +     + + +       E E  +L ++L+              I S  +   ++
Sbjct: 312 VPASADTAGQLLTRGQAANYVLGERESAELETLLKT------------RIQSFQQ---RM 356

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI--TLGSTKEEKLLSLR 542
            G  V         ++L     + +   +T +     R    +    +     ++L  + 
Sbjct: 357 LGVIVFVAAVLTVVLYLLLAFYAGVMRTVTRLREASERMLDNREDKAITLDTHDELGEVV 416

Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNK---------LSHAKKIAEKESSHKSDFLARVS 593
           +   ++        T  ++   +    +         L  A+++AE+    K+ FLA +S
Sbjct: 417 LAFNRVADRMRTEKTQAEVESRRARAAEEEVRSRESELVRARQVAEEAVRAKAAFLATMS 476

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HEIRTPL  ++G S ++         +    +    I  S + +L +++D+LD SKIESG
Sbjct: 477 HEIRTPLNGVVGMSTLLAETAL----DAEQRDILQTIRLSSDQLLAVISDILDFSKIESG 532

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-----ILADLRSVKQIA 708
           + +L  EPVS+   + EA  +    A EK I +               IL D+  ++QI 
Sbjct: 533 RFDLESEPVSVHNMIEEACDIAAPRAREKGIELIVDVPGAAAGGPPPAILGDVTRLRQIL 592

Query: 709 LNILSNAIHFTPSGGQIIISTTHTSNEE------VILRVRDTGVGMTNYELEKAMKPFGQ 762
           +N+++NA+ FT  G  + + +      +      +   V DTG+G+    +    + F Q
Sbjct: 593 INLVNNAVKFTEHGA-VSVHSRLAEAPDEQGLALIEFSVHDTGIGIPPERVGALFEAFMQ 651

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
           +  S   +  GTGLGL + K +V+   GK  + S   KG++            P +
Sbjct: 652 VDASTTRKYGGTGLGLAICKRLVELMGGKISVTSKLGKGSIFSFTVRAALAELPKE 707


>gi|77409121|ref|ZP_00785835.1| sensor histidine kinase [Streptococcus agalactiae COH1]
 gi|77172249|gb|EAO75404.1| sensor histidine kinase [Streptococcus agalactiae COH1]
          Length = 551

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 73/386 (18%), Positives = 166/386 (43%), Gaps = 34/386 (8%)

Query: 426 ENMPQNGIEPEDVDTRINKRKM--EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           E +       +    +I  +K+  +    +  +I+    +G+ +++ +  I+S N    K
Sbjct: 194 EEITPLLRRLDSHQAKIQHQKLLLQKRQKEFDTIISKIKEGMILLDDQARIVSINAEALK 253

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           LF    +          +E +    +   + + L    ++           E     + +
Sbjct: 254 LFQINDDW----HGRFMMEVSRDLTLKDLIDQGLKGKKKEA------NIDIENNHYRVLV 303

Query: 544 IIKKLPFS-SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
                    +   + + D+++  Q +                + +F A VSHE++TPL  
Sbjct: 304 RPTTDNNRVTGLVVLLFDVTDQLQME--------------QLQREFTANVSHELKTPLHV 349

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           I G+SE++ NQ    + N    ++A  I +    ++ +V D++++S ++  +  L  E V
Sbjct: 350 ISGYSELLANQM---VPNEEVPQFAAKIHKESERLVKLVEDIINLSHLDEQE-KLPQETV 405

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
           +L +   + +  +Q  A++K I I  +    I  +  +   +  +  N+  NAI +    
Sbjct: 406 NLYDLTQKVLEGLQAKADKKHIQINFNGEEAI--LRGNPVLLNSLVYNLCDNAITYNHEK 463

Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
           GQ+ ++  ++ +  + L V DTG+G+   + ++  + F ++  S+     GTGLGL + K
Sbjct: 464 GQVNVTLKNSPD-TITLEVSDTGLGIAEKDKKRIFERFYRVDKSRSKIVGGTGLGLSIVK 522

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIF 808
           + +D + G   + S   +GT + ++ 
Sbjct: 523 SALDFHNGSIKVDSHLGQGTTMTVLL 548


>gi|326796477|ref|YP_004314297.1| integral membrane sensor hybrid histidine kinase [Marinomonas
           mediterranea MMB-1]
 gi|326547241|gb|ADZ92461.1| integral membrane sensor hybrid histidine kinase [Marinomonas
           mediterranea MMB-1]
          Length = 854

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 85/291 (29%), Positives = 145/291 (49%), Gaps = 17/291 (5%)

Query: 538 LLSLRIII-KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK------------ESSH 584
              L   I +++       +   D SE  + +++    +    +             S+ 
Sbjct: 316 FYWLLGRIERRIHAGEKRIIEERDRSEGLRLQSETLRVEAEEHRESAERARDDAEKASAV 375

Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
           KS+FLA++SHE+RTPL AIIG SE++        G+  YIE    + RS   +L+++N++
Sbjct: 376 KSEFLAKMSHELRTPLNAIIGLSEMMHEDAV-EFGDEDYIEPLERVVRSSKHLLNLINEI 434

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704
           LDISKIE+GKM L    +  D  + E    V+  A  K +      + ++  I+ D   +
Sbjct: 435 LDISKIEAGKMELSEAELDFDAVLEEVFQTVEPIAKGKPLSFEYE-SASVGVIVGDALRI 493

Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764
           KQI  N+LSNA+ FT SG ++ +      ++++ + V DTG+GM+  + E   + F Q+ 
Sbjct: 494 KQIFFNLLSNAVKFTESG-KVKLKV-VEQSDQLQVDVIDTGLGMSIEQTETLFQDFVQVD 551

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
           +S   + EGTGLGL +++       G   + S   KG++  +  P+   S 
Sbjct: 552 SSVNRKFEGTGLGLAISRRFARMMNGDITVQSEVGKGSVFSVRLPVKRVSQ 602


>gi|317051405|ref|YP_004112521.1| PAS sensor protein [Desulfurispirillum indicum S5]
 gi|316946489|gb|ADU65965.1| PAS sensor protein [Desulfurispirillum indicum S5]
          Length = 811

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 82/567 (14%), Positives = 187/567 (32%), Gaps = 55/567 (9%)

Query: 281 NQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HG 339
           +  T     G +   +   F  L  RN    +      E    E      +  + ++   
Sbjct: 259 SLQTIGFAVGGIGAGAFVLFLLLLVRNQRRFNRALQLSEYRLREAQRIASVGNWEWNIEN 318

Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399
           N  + +     +   K              +          +  V    +D +       
Sbjct: 319 NALHWSDEIYRIFGLKPQQFTATYDAFLARVHP--CDRQRVVAAVNASVADGSPYDID-- 374

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM------- 452
            H I         +              +   G   +    +  ++++            
Sbjct: 375 -HRILLPDGQERVVREQGEVIFR-DGRAVTMTGTVHDITRVKRVEQELTASEEKHRNLSE 432

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
           +  ++L    D IA I+R+  I   N A   L+G   E I        +  ++       
Sbjct: 433 RFVAVLNGIPDAIAEIDRQYTIRWVNDAARFLYGRDPEVITGNHCHHLIADSSEPCSECP 492

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNK 570
           + ++       +  K   G+    ++  +  +      S      +   D++E    + +
Sbjct: 493 VRQVFETSTPASQTKYLSGN----RIWEINAVPANFHDSTFDTVIIVGRDVTERTHMQQE 548

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN---------QRFGP---- 617
              A  +     S      A V+HEI  P   I+  + V+++         +R       
Sbjct: 549 AMRAAHL-----SLMGQLSAGVAHEINNPNNFIMLNTSVLQDIWGDISMLLERMHAHQPL 603

Query: 618 --------LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
                          +  + I R    +  IV+ L + S  E   +    + V +++ + 
Sbjct: 604 HAGGFTFDELRDEIPQMLSRIHRGSQRIKVIVDHLKEFSSQEKATL---RDDVEINQVIR 660

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS-GGQIIIS 728
           + ++++     +     R    + +P +      ++Q+ +N++ NA+  T     ++I++
Sbjct: 661 DGLTMMANEIRKHGEQFRLELTDQLPLLRGRGPRLEQVIINLVMNALEATHGMQEEVIVA 720

Query: 729 TTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
           +   ++   V + V DTG G+    L+   +PF     +      GTGLGL + +++++ 
Sbjct: 721 SRFNADTSMVEVTVSDTGCGIEPDTLKHLFEPFFTTKYA----AGGTGLGLAICQSIIEE 776

Query: 788 NMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           +MG   + S+P  GT   +  P+   +
Sbjct: 777 HMGSIRVDSSPGIGTTFTVSLPVSRKA 803


>gi|188534845|ref|YP_001908642.1| hybrid sensory histidine kinase BarA [Erwinia tasmaniensis Et1/99]
 gi|188029887|emb|CAO97771.1| Signal transduction histidine-protein kinase BarA [Erwinia
           tasmaniensis Et1/99]
          Length = 909

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 95/351 (27%), Positives = 162/351 (46%), Gaps = 23/351 (6%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           LF Y +   +  P    +       ++      L   +   +             +++ +
Sbjct: 193 LFAYRLMRDVTGPIRNMVS-----AVDRIRRGQLDSRVEGYMLGELDVLKNGINSMAMSL 247

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                           D+ E  ++      +L  AK+ A++ +  KS+FLA +SHE+RTP
Sbjct: 248 TAYHEEMQQNIDQATSDLRETLEQMEIQNVELDLAKRRAQEAARIKSEFLANMSHELRTP 307

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+     Q      N    +Y + I+RS N +L I+ND+LD SK+E+GK+ L  
Sbjct: 308 LNGVIGFT----RQTLKTALNSTQRDYLHTIERSANNLLGIINDVLDFSKLEAGKLVLET 363

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P  L   + E + L+   A+EK + +  +  +++P  I+ D   ++QI +N+L NAI F
Sbjct: 364 IPFPLRATLDEVVVLLAQSAHEKGLELTLNIQSDVPDNIIGDPMRMQQIIVNLLGNAIKF 423

Query: 719 TPSGGQ-IIISTTHTSNEEVILRVR--DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T SG   I +    +SN  + L V+  DTG+G+++ +  +  + F Q   S   R  GTG
Sbjct: 424 TESGNIDIRVEKRASSNNRMELEVQIHDTGIGISDKQQSQLFQAFRQADASISRRHGGTG 483

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY----DTSHPH--DCI 820
           LGL + + +V+   G+    S   +G+       L       S PH  DC+
Sbjct: 484 LGLVITQKLVNEMGGEISFHSRLHRGSTFWFHVNLALNPNAASDPHIMDCL 534


>gi|322696596|gb|EFY88386.1| putative histidine kinase HHK2p [Metarhizium acridum CQMa 102]
          Length = 2074

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 109/619 (17%), Positives = 196/619 (31%), Gaps = 103/619 (16%)

Query: 235  RMKNKVSSLTEYYAHKDDVL-KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293
            +    +S+      H DD     + +                   +             +
Sbjct: 1102 QTVADLSADPWGSIHPDDRAGYLKAWGHSLRTGEQFSRSVRIKRFDGAYRWFYARAVASK 1161

Query: 294  NNSKESFEYLSHRNHP----------SLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLF 342
            +      ++L                +     +  E       +  P   F       + 
Sbjct: 1162 DKRGVIMQFLGSYMDIHDQHIAELKAARQEEIEASEAKHRLLANLIPQIIFTATEDDAIT 1221

Query: 343  YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT 402
            +AN  +L  T     D + +              D+ A   + +     +   A +    
Sbjct: 1222 FANDQWLSYTGQSFEDSLGLG------FMDHVHPDDLARCRIPIEHGGESLNDARSPPEE 1275

Query: 403  IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL--CSILEA 460
                  +S      P  +  Q    + ++G+                 +  L    + E 
Sbjct: 1276 KDHGGASSSGTQTSPTARNVQQQPAVGKSGMRNVQPALSRASSSGSESIYSLPSAELTEL 1335

Query: 461  TSDGIA--IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
               GI     +  G +  T                                         
Sbjct: 1336 ARKGIIKVTTDTSGRLSYT----------------------------------------- 1354

Query: 519  LDLRQTLEKITLGSTKEEKLLSLRIIIKKL------PFSSCYSLTMHDISEWKQEKNKLS 572
                          +K  +     I   ++        +S Y  +  DI++ K  + KL 
Sbjct: 1355 --------TEVRLRSKTGEYRWHLIRCVEIDTFDFGRGASSYFGSATDINDHKLLEAKL- 1405

Query: 573  HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
                  ++    K  FL+ +SHEIRTPL  I G    +++       N    +Y N I  
Sbjct: 1406 ------KEAMESKGRFLSNMSHEIRTPLIGISGMVSFLQDTTL----NEEQRDYTNTIQT 1455

Query: 633  SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
            S N ++ I+ND+LD+SK+++G M L +E       + +   LV   A  KR+ +      
Sbjct: 1456 SANSLIMIINDILDLSKVDAGMMKLKYEWFHTRSLIEDVNELVSTMAIAKRLELNYLVEA 1515

Query: 693  NIP-RILADLRSVKQIALNILSNAIHFTPSG---GQIIISTTH------TSNEEVILRVR 742
            ++P  +  D   ++Q+ LN++ NAI FT  G    +  + T         +   +   + 
Sbjct: 1516 DVPAWVKGDKVRIRQVLLNVIGNAIKFTAEGEVFSRCRVYTEEDPVVCNENEIMLQFAIT 1575

Query: 743  DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
            DTG G T  E E   KPF QI  S   +  G+GLGL +++ +V+ + GK    + P KG+
Sbjct: 1576 DTGRGFTKEEAELIFKPFSQIDGSSTRQHGGSGLGLVISRQLVELHGGKMEGTAIPGKGS 1635

Query: 803  LIE----IIFPLYDTSHPH 817
                      P     HP+
Sbjct: 1636 TFTFTARFTLP-SPEDHPN 1653



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/208 (12%), Positives = 46/208 (22%), Gaps = 16/208 (7%)

Query: 316  DEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
               + L    +D  P   FV     G   + N  FL        D      G        
Sbjct: 1062 PPSDRLKGLILDSLPAHVFVSLPQTGETVWVNSRFLSYRGQTVADLSADPWG-----SIH 1116

Query: 374  KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
                   +K            +   R   I+                 ++    M   G 
Sbjct: 1117 PDDRAGYLKAWGHSLRTGEQFS---RSVRIKRFDGAYRWFYARAVASKDKRGVIMQFLGS 1173

Query: 434  EPEDVDTRINK------RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
              +  D  I +       ++E    +   +       I     +  I   N       G 
Sbjct: 1174 YMDIHDQHIAELKAARQEEIEASEAKHRLLANLIPQIIFTATEDDAITFANDQWLSYTGQ 1233

Query: 488  PVEDILRKPFTVFLEQNTPSVMNHYLTE 515
              ED L   F   +  +  +     +  
Sbjct: 1234 SFEDSLGLGFMDHVHPDDLARCRIPIEH 1261



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/141 (12%), Positives = 39/141 (27%), Gaps = 10/141 (7%)

Query: 457  ILEATSDGIAI-INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
            IL++    + + + + G  +  N       G  V D+   P+   +  +  +        
Sbjct: 1071 ILDSLPAHVFVSLPQTGETVWVNSRFLSYRGQTVADLSADPWGS-IHPDDRAGYLKAWGH 1129

Query: 516  ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM----HDISEWKQEKNKL 571
             L    +    +       +                    +       DI +    +  L
Sbjct: 1130 SLRTGEQ--FSRSVRIKRFDGAYRWFYARAVASKDKRGVIMQFLGSYMDIHDQHIAE--L 1185

Query: 572  SHAKKIAEKESSHKSDFLARV 592
              A++   + S  K   LA +
Sbjct: 1186 KAARQEEIEASEAKHRLLANL 1206


>gi|218674838|ref|ZP_03524507.1| probable two-component sensor histidine kinase protein [Rhizobium
           etli GR56]
          Length = 332

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 95/280 (33%), Positives = 147/280 (52%), Gaps = 5/280 (1%)

Query: 533 TKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
             + +   LR+ +     +          + D+S  +Q + +       AE  +  KS F
Sbjct: 5   RDQRQFAYLRMDMTARRDADGELAAVIAQLRDVSVEQQLRAEAQSRAADAESANDAKSRF 64

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
           LA VSHE+RTPL AI+GFS+++  + FG   N R  EY   +  SG  +L +VN +LD+S
Sbjct: 65  LAAVSHELRTPLNAILGFSDILIGEYFGKFENDRQREYVGLVRESGAHLLSVVNTMLDMS 124

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIA 708
           KIE+G+  L  E   +  +V    S++ L A  K + + +     +  I+AD R+++QI 
Sbjct: 125 KIEAGRYELILEAFDISASVRSCESMLALQAKSKGVTLTSRIQRGLGEIVADQRAIQQIL 184

Query: 709 LNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
           +N++ NA+ FT +GG + +         + L V DTG+G+   +L    +PF QI N   
Sbjct: 185 INLVGNAVKFTEAGGVVSVDAAARD-GILKLTVSDTGIGIAADKLAMLGQPFVQIQNDYT 243

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            R EGTGLGL L K +V  + G F I S P +GT+I I  
Sbjct: 244 RRFEGTGLGLSLVKGLVALHGGNFAIASQPGEGTIITIEI 283


>gi|109899844|ref|YP_663099.1| Hpt sensor hybrid histidine kinase [Pseudoalteromonas atlantica T6c]
 gi|109702125|gb|ABG42045.1| Hpt sensor hybrid histidine kinase [Pseudoalteromonas atlantica T6c]
          Length = 1498

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 85/267 (31%), Positives = 135/267 (50%), Gaps = 19/267 (7%)

Query: 562  SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
            S+ +Q   +   A+++AE+ S  KSDFLA +SHEIRTP+  ++G +EV+ +    P    
Sbjct: 842  SQLEQAVVETEKARRLAEQASKEKSDFLAIMSHEIRTPMNGVLGMTEVLLSSDLKP---- 897

Query: 622  RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
            +   +A  + RSG L+LD++N++LD SK+E+GK  L   PV L+  + E   L    A  
Sbjct: 898  KQQHFAQLVYRSGRLLLDLLNNILDFSKLEAGKATLESVPVDLEALIEEVCDLFSEAAYN 957

Query: 682  KRILIRTSFANN-IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH------TSN 734
            K + I    +   +P++  D   ++QI  N+ SNAI FT  G ++ +S            
Sbjct: 958  KGLNINAILSPEPLPQVYGDPARLRQIIANLTSNAIKFTERG-EVNVSIRRVACHDTEHE 1016

Query: 735  EE-----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
                    +  V+DTG+GM     +K  + F Q   S   +  GTGLGL + K +     
Sbjct: 1017 GNNKYSGFVFCVQDTGIGMAPDRQQKVFEMFTQADASTTRKYGGTGLGLAICKQLTVLMG 1076

Query: 790  GKFYIFSTPAKGTLIEII--FPLYDTS 814
            G+  + S   +G+   +    PL DTS
Sbjct: 1077 GQIGVQSNIGEGSRFSVKIDLPLSDTS 1103


>gi|75910949|ref|YP_325245.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
 gi|75704674|gb|ABA24350.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
          Length = 630

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 73/492 (14%), Positives = 191/492 (38%), Gaps = 43/492 (8%)

Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399
               AN     +  Y++             L   +L   + ++ +    +D         
Sbjct: 27  EFRVANCELEWVDNYEAAKVAIANNQHDIYLVDYRLGSRSGLELLREAIADGCTSPIIL- 85

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459
              +    +  + +  +     +   +N     +    +   I ++++E ++ +  ++L+
Sbjct: 86  ---LTGQGDAEIDIEAMKAGAVDYLEKNQLNAPLLERSILYAIERKQIEKKIREQAALLD 142

Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL 519
             +D I + + +G +L  N A ++L+G+   + +        ++   +++   L E+   
Sbjct: 143 IANDAIFVQDLDGNVLFWNEAAARLYGWQKAEAINNKIQNLWQEKNLALLQKSLNELQQK 202

Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPF----SSCYSLTMHDISEWKQEKNKLSHAK 575
               + +     +TK  + + +      +      S C  +   +I++ KQ + +   A+
Sbjct: 203 G---SWKGELYQTTKSGREIIVESRWTLVHEFGNKSQCILVVNTEITQKKQLEAQFLRAQ 259

Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
           ++            + ++H++   L  I+  ++++++Q    + + R       +  +  
Sbjct: 260 RL-----ESIGTLASGIAHDLNNVLAPILMTAQLLESQ----IKDERSQRLLPILITNAK 310

Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695
              ++V  +L  ++   G+  L    + L   V E   +++     K I +    + N+ 
Sbjct: 311 RGANLVKQVLSFTRGLEGERTL----LQLKHLVGEIQQIIKETFP-KSIELAAHISQNLW 365

Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTT--------------HTSNEEVILRV 741
            +  D   + Q+ +N+  NA    P GG + I+                      V++ V
Sbjct: 366 TVSGDATQLHQVLMNLCVNARDAMPKGGTLKITAENFLIDENYARMNIDAKVGPYVVVTV 425

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            DTG+G+++  L++  +PF          G+GTGLGL     ++ ++ G   +++   +G
Sbjct: 426 TDTGIGISSDILDRIFEPFFTTKEL----GKGTGLGLSTVLGIIKSHGGFINVYTEEGEG 481

Query: 802 TLIEIIFPLYDT 813
           +  ++  P  DT
Sbjct: 482 SQFKVYLPAQDT 493


>gi|150025735|ref|YP_001296561.1| two-component system sensor histidine kinase [Flavobacterium
           psychrophilum JIP02/86]
 gi|149772276|emb|CAL43754.1| Probable two-component system sensor histidine kinase
           [Flavobacterium psychrophilum JIP02/86]
          Length = 576

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 84/371 (22%), Positives = 164/371 (44%), Gaps = 23/371 (6%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           K+  E  +L +++    D I  ++ +G IL  N    K+ G  +++++ K       +N 
Sbjct: 224 KLSFEKKRLETLINNMHDPIVGLDEQGFILFANNEALKIMGVKLDEVIGKLAANLALKND 283

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDI 561
                              ++    G     +   + IIIK     +       + + +I
Sbjct: 284 LVKSLIMTELEDEKQKAVPMKIFADGKESYFEKEIVNIIIKPTGEENTIYIGDVIILRNI 343

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           + +K+                  K++F+A +SHE++TP+++I    ++++ ++ G + N 
Sbjct: 344 TPFKELDF--------------AKTNFIATISHELKTPISSIKFSLQLLEKEQTG-ILNE 388

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
                   I      +L I  +LL++S++E+G + L+ E  +  + V  A   V++ A +
Sbjct: 389 EQKYLVESIQDDSQRLLKITGELLELSQVETGNIQLNIEKSNPYDIVYYATEAVKIQAEQ 448

Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
           K+I +       +P I AD      + +N L+NAI ++    +II+      N  +I +V
Sbjct: 449 KQIELVVEADEKLPNIKADKEKTAWVLINFLTNAIKYSSENSKIIVKLK-QENNHIIFQV 507

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            DTG G+ N    K    + QIP S ++   GTGLGL ++K  ++A  G   + S    G
Sbjct: 508 IDTGKGIDNRYKSKVFDKYFQIPGSHKL---GTGLGLAISKEFIEAQNGTISVESELGLG 564

Query: 802 TLIEIIFPLYD 812
           +   +   LY+
Sbjct: 565 STFAVKLKLYN 575


>gi|126658538|ref|ZP_01729685.1| Multi-sensor Hybrid Histidine Kinase [Cyanothece sp. CCY0110]
 gi|126620125|gb|EAZ90847.1| Multi-sensor Hybrid Histidine Kinase [Cyanothece sp. CCY0110]
          Length = 746

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 83/259 (32%), Positives = 143/259 (55%), Gaps = 11/259 (4%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E ++   +L  AKK+A++ +  KSDFL+ +SHE+RTPL  I+G++++++         P 
Sbjct: 273 EKQEYTEQLEKAKKMADEANQAKSDFLSNISHELRTPLNGILGYAQILERN---SNLTPL 329

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             +    I  SGN +L ++NDLLD+SKIE+ K++L+   +     ++  + ++   A +K
Sbjct: 330 QTDGLRIIHNSGNHLLTLINDLLDLSKIEARKLDLYPTDIDFHTFLNTVVEMIHTKARQK 389

Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI-IIST---THTSNEEV 737
            I++      N+P+ +  D + ++QI LN+L N + FT  G  I  +     + T N+  
Sbjct: 390 DIVLVYLPDPNLPKAVQVDEKRLRQILLNLLGNGVKFTDQGKVIFKVQVTPLSLTINQTF 449

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
              + DTGVG+    LE   KPF Q+ N  Q R EGTGLGL ++K +++   G+  + S 
Sbjct: 450 RFEIIDTGVGINEEYLETVFKPFEQVGN-VQHRSEGTGLGLAISKQLIELMGGELKVESK 508

Query: 798 PAKGTLIE--IIFPLYDTS 814
             +G+     I  P+  T+
Sbjct: 509 VNQGSKFWFDIALPVIKTN 527


>gi|72160690|ref|YP_288347.1| GAF sensor hybrid histidine kinase [Thermobifida fusca YX]
 gi|71914422|gb|AAZ54324.1| GAF sensor hybrid histidine kinase [Thermobifida fusca YX]
          Length = 1406

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 72/261 (27%), Positives = 140/261 (53%), Gaps = 14/261 (5%)

Query: 563  EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
            + ++ +  L       +  S +KS+FLA +SHE+RTPL +++  + ++ +     L  P+
Sbjct: 936  QIERARRSLEDRAHQLQVSSKYKSEFLANMSHELRTPLNSLLILARLLADNSEKNLT-PK 994

Query: 623  YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             +E+A  I ++G+ +L ++N++LD+SK+E+G+M L+   VS+ + V    +  +  A+EK
Sbjct: 995  QVEFAQTIYKAGSDLLQLINEILDLSKVEAGRMELNPSHVSISQLVDYVEASFRPLASEK 1054

Query: 683  RILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQ------------IIIST 729
             +      + ++P ++  D + ++Q+  N+LSNA+ FT SG              I + T
Sbjct: 1055 GLAFAVEVSPDVPDQLWTDEQRLQQVLRNLLSNAVKFTSSGEVRLVIEPAWAVEDIDVDT 1114

Query: 730  THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
                +E +   V DTG+G+   +L+   + F Q       R  GTGLGL +++ M +   
Sbjct: 1115 FTDPDEVIAFSVIDTGIGIPEDKLQLIFEAFHQGDGGTSRRFGGTGLGLSISRNMAELLG 1174

Query: 790  GKFYIFSTPAKGTLIEIIFPL 810
            G+  + ST  +G+   ++ P+
Sbjct: 1175 GEIRVSSTVGEGSTFTLLLPV 1195


>gi|253701316|ref|YP_003022505.1| Hpt sensor hybrid histidine kinase [Geobacter sp. M21]
 gi|251776166|gb|ACT18747.1| Hpt sensor hybrid histidine kinase [Geobacter sp. M21]
          Length = 818

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 77/261 (29%), Positives = 128/261 (49%), Gaps = 13/261 (4%)

Query: 565 KQEKNKLSHAKKI---AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           +Q +  L   ++    A+  +  KSDFLA++SHEIRTP+  ++G +E++ N         
Sbjct: 163 RQLEESLEEVRRAMESAQSANRAKSDFLAQMSHEIRTPMYGVLGMTELLLNTDLSK---- 218

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
               +   + RSG  +L I+N++LD SKIE+G+M L   P  L +  ++A+++    A +
Sbjct: 219 EQARFVESVRRSGEALLGIINNILDFSKIEAGRMELETIPFDLHQLAADAVAMFAEDAAK 278

Query: 682 KRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-TSNEEVIL 739
           K I +       +P     D   ++Q+ +N+L NA+ FTP G  + +S +       V +
Sbjct: 279 KGIALSCRIEPGLPGMFQGDPGRLRQVMVNLLGNAVKFTPEGA-VTLSVSLAREPALVRV 337

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V DTG+G++    E+    F Q   S   R  GTGLGL +AK + +   G   + S P 
Sbjct: 338 TVEDTGIGISRESQERIFDHFAQGDESMTRRYGGTGLGLAIAKQLTELMGGVMELSSEPG 397

Query: 800 KGTLIEIIF---PLYDTSHPH 817
           +G          P +    P 
Sbjct: 398 EGASFSFTVALKPHHKAPRPE 418


>gi|332293016|ref|YP_004431625.1| PAS/PAC sensor signal transduction histidine kinase [Krokinobacter
           diaphorus 4H-3-7-5]
 gi|332171102|gb|AEE20357.1| PAS/PAC sensor signal transduction histidine kinase [Krokinobacter
           diaphorus 4H-3-7-5]
          Length = 651

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 100/665 (15%), Positives = 211/665 (31%), Gaps = 65/665 (9%)

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS---- 242
            R     +   + L++K   L+   +       +  D+  +++       +N V +    
Sbjct: 7   AREKAARKEAERILEEKSLELYHKSEELRVSNSKLEDVVKERTSELEGVFENIVDAYVVM 66

Query: 243 --------------------------LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFH 276
                                     L +     ++    E + +LT++ +    Q    
Sbjct: 67  ELSGNVIKMNDAAITLLGYTLEDNFNLWDIVHPDENDKVVEGFEVLTTKGAITDFQIKII 126

Query: 277 TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG----ENLTPETVDKCPIP 332
             + +          + N+  +           +     ++     EN     +      
Sbjct: 127 MSSGSIKLVHINASIVFNDEGKPIAAQGIVRDITQDKAAEQRLIDSENRLSALILNLESG 186

Query: 333 FFVYSHGN-LFYANPSFLLLTKY-KSVDDIEIAGGLSTLLDAPKL---SDNNAIKPVMLY 387
             +      +   N  F        S + +          D+  L    +    +   L 
Sbjct: 187 ILLEDEHRNIVITNNRFCDFFNIPSSPEQLIGVNCEHAAEDSKHLFKDPEEFVSRINTLT 246

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
           R     ++   +L   +        +    F    +            +    R  +  +
Sbjct: 247 RKKEQALSDELKLVDGR--------ILERDFIPIYEEGIYKGHLWTYRDVTLRRKFRESI 298

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
           E E  +   I+   + G+  +N +  +L  N +   L GY  E++L K     L      
Sbjct: 299 EAERQKYSDIIANMNLGLIEVNLDDEVLMINNSFELLSGYTEEELLGKKAKEILLTPASQ 358

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWK 565
                           + E   +  + E K   +                    DI+E K
Sbjct: 359 KQLTQENNDRLSGASNSYEVQAITKSGELKHWLISGAPNYNLNGKVIGSIGIHLDITELK 418

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
             + +  +  K  EK +    ++   VSH++++PL +I      IK+             
Sbjct: 419 SLEIQKENLLKKLEKSNDELQEYAHVVSHDLKSPLRSINALVNWIKDDNEDVFTKET-KS 477

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ-LYANEKRI 684
           +   ID +   +  +++D+L+ S +  G  N   E V+L E +++  +L+          
Sbjct: 478 HLEMIDTTLEKMEQLISDVLEYSSV--GSENAPREKVNLQEVLADIETLLHCPE------ 529

Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP-SGGQIIISTTHTSNEEVILRVRD 743
            I  +   ++P +  D   ++Q+  N++SNAI +     G I +  T  +       V+D
Sbjct: 530 HITLNIHPDLPTVNGDKVKLQQLFQNLMSNAIRYCDKEEGLIEVGYT-ENKTHYTFTVKD 588

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
            G+G+     +K  K F     S     + TG+GL + K +VD   G  ++ S   +GT 
Sbjct: 589 NGIGIPKEYHDKIFKIFQ----SLNNHKDSTGIGLSIVKKIVDLYKGSIWLESNVGEGTT 644

Query: 804 IEIIF 808
                
Sbjct: 645 FFFTL 649



 Score = 71.2 bits (173), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 39/382 (10%), Positives = 104/382 (27%), Gaps = 31/382 (8%)

Query: 93  GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPI 152
           G + ++++     +G          L D+      D      ++L  +           +
Sbjct: 70  GNVIKMNDAAITLLGYTLEDNF--NLWDIVHPDENDKVVEGFEVLTTKGAITDFQIKIIM 127

Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212
              ++ + + + A  +++   +    +G  IV     D          + + S L    +
Sbjct: 128 SSGSIKL-VHINASIVFNDEGKPIAAQG--IVRDITQDKAAEQRLIDSENRLSALILNLE 184

Query: 213 GHSSVEKEKYDIFSQQ----SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
               +E E  +I                  ++  +   +A +D     +      S  ++
Sbjct: 185 SGILLEDEHRNIVITNNRFCDFFNIPSSPEQLIGVNCEHAAEDSKHLFKDPEEFVSRINT 244

Query: 269 LPEQEDFHTINLNQYTKKQYFG----TLQNNS---KESFEYLSHRNHPSLSAYFDEGENL 321
           L  +++    +  +    +        +          + Y             +     
Sbjct: 245 LTRKKEQALSDELKLVDGRILERDFIPIYEEGIYKGHLWTYRDVTLRRKFRESIEAERQK 304

Query: 322 TPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
             + +    +    V     +   N SF LL+ Y   +++        LL          
Sbjct: 305 YSDIIANMNLGLIEVNLDDEVLMINNSFELLSGYT-EEELLGKKAKEILLTPASQKQLTQ 363

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
                L  +  +       +  I  + E    +        N   + +   GI  +  + 
Sbjct: 364 ENNDRLSGASNS-----YEVQAITKSGELKHWL-ISGAPNYNLNGKVIGSIGIHLDITEL 417

Query: 441 RINK-------RKMEIEVMQLC 455
           +  +       +K+E    +L 
Sbjct: 418 KSLEIQKENLLKKLEKSNDELQ 439


>gi|25011985|ref|NP_736380.1| sensor histidine kinase [Streptococcus agalactiae NEM316]
 gi|24413528|emb|CAD47606.1| Unknown [Streptococcus agalactiae NEM316]
          Length = 551

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 74/385 (19%), Positives = 168/385 (43%), Gaps = 32/385 (8%)

Query: 426 ENMPQNGIEPEDVDTRINKRKM--EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           E +       +    +I  +K+  +    +  +I+    +G+ +++ +  I+S N    K
Sbjct: 194 EEITPLLRRLDSHQAKIQHQKLLLQKRQKEFDTIISKIKEGMILLDDQARIVSINAEALK 253

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           LF    +      +           +   L +++   L+   ++  +G       + +R 
Sbjct: 254 LFQINDD------WHGRFMMEVSRDL--TLKDLIDQGLKGKKKEANIGIENNHYRVLVRP 305

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
                   +   + + D+++  Q +                + +F A VSHE++TPL  I
Sbjct: 306 TTDNNR-VTGLVVLLFDVTDQLQME--------------QLQREFTANVSHELKTPLHVI 350

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
            G+SE++ NQ    + N    ++A  I +    ++ +V D++ +S ++  +  L  E V+
Sbjct: 351 SGYSELLANQM---VPNEEVPQFAAKIHKESERLVKLVEDIISLSHLDEQE-KLPQETVN 406

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
           L +   + +  +Q  A++K I I  +    I  +  +   +  +  N+  NAI +    G
Sbjct: 407 LYDLTQKVLEGLQAKADKKHIQINFNGEEAI--LRGNPVLLNSLVYNLCDNAITYNHEKG 464

Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
           Q+ ++  ++ +  + L V DTG+G+   + ++  + F ++  S+     GTGLGL + K+
Sbjct: 465 QVNVTLKNSPD-TITLEVSDTGLGIAEKDKKRIFERFYRVDKSRSKIVGGTGLGLSIVKS 523

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIF 808
            +D + G   + S   +GT + ++ 
Sbjct: 524 ALDFHNGSIKVDSHLGQGTTMTVLL 548


>gi|327441258|dbj|BAK17623.1| signal transduction histidine kinase [Solibacillus silvestris
           StLB046]
          Length = 525

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 82/369 (22%), Positives = 157/369 (42%), Gaps = 28/369 (7%)

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
           +  +   L    E  +D IA+ + E  +++ N A  KL+G+  E+ L +     +     
Sbjct: 177 LNSKHAYLHLFFEQANDAIAVFDLEDRVIAVNPAFEKLYGWSKEEALGR-ILPLIPPERV 235

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS----LTMHDIS 562
                 + ++            T+   K+      ++ +  +           +   DIS
Sbjct: 236 EESKKRIEDLKLGKKYHL--HETIDMRKDGTFFDAQLSLSPILSPHGEIIGSSVISRDIS 293

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
             K+ +N +  ++K+         +  A V+HEIR P+T I G+ +++      P     
Sbjct: 294 YIKENENLILQSEKL-----KLVGELAAGVAHEIRNPMTVISGYVQMMNEDPNSP----- 343

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
           Y EY   I      +  I+++ L +SK ++ +    + P++L EA+SE +  +Q     K
Sbjct: 344 YYEYTKLIQNETERIELILSEFLVLSKPQANQ----YAPINLAEALSEVVQFLQYEFQSK 399

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-EVILRV 741
            I +          IL +   +KQ+ +N+  NAI      G I +    + +  E+ +++
Sbjct: 400 AISLNIINEFLNITILGNKNQLKQVFINLFKNAIEAINEDGSITLQVCKSKDGKEIYIQM 459

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            DTG G+  + LE+  +PF         + +GTGLG+ +   +V  + G   I S    G
Sbjct: 460 IDTGCGIPPHVLERIFEPFYTT------KTKGTGLGMMIINKIVQDHQGSIQIKSKQHVG 513

Query: 802 TLIEIIFPL 810
           T I + FP+
Sbjct: 514 TEILLTFPI 522



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 36/114 (31%), Gaps = 4/114 (3%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D    +  ++    K  G    + +G  L  +      +    I DL   +     +T  
Sbjct: 199 DLEDRVIAVNPAFEKLYGWSKEEALGRILPLIPPERVEESKKRIEDLKLGKKYHLHETID 258

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
              +GT  +    L+  PI S + E  G     I        +   L  + +K 
Sbjct: 259 MRKDGT--FFDAQLSLSPILSPHGEIIGSS--VISRDISYIKENENLILQSEKL 308



 Score = 45.4 bits (106), Expect = 0.038,   Method: Composition-based stats.
 Identities = 17/161 (10%), Positives = 44/161 (27%), Gaps = 17/161 (10%)

Query: 326 VDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
            ++      V+     +   NP+F  L  +   + +         L  P+  + +  +  
Sbjct: 188 FEQANDAIAVFDLEDRVIAVNPAFEKLYGWSKEEALGRILP----LIPPERVEESKKRIE 243

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
            L                                   +   E +  + I  +    + N+
Sbjct: 244 DLKLGK----KYHLHETIDMRKDGTFFDAQLSLSPILSPHGEIIGSSVISRDISYIKENE 299

Query: 445 RKMEIEVMQLCSILEATSDGIA------IINREGIILSTNR 479
             + ++  +L  + E  + G+A      +    G +   N 
Sbjct: 300 -NLILQSEKLKLVGE-LAAGVAHEIRNPMTVISGYVQMMNE 338


>gi|116751158|ref|YP_847845.1| putative PAS/PAC sensor protein [Syntrophobacter fumaroxidans MPOB]
 gi|116700222|gb|ABK19410.1| PAS/PAC sensor hybrid histidine kinase [Syntrophobacter
           fumaroxidans MPOB]
          Length = 1109

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 99/658 (15%), Positives = 205/658 (31%), Gaps = 62/658 (9%)

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
               F  + E        +    D+         L                 D+   ++ 
Sbjct: 331 FRILFHSIPEPLALAIGDDAAVVDVNESFCRFLGLSRAEIEGRPFMVLDIWHDLEDRDQI 390

Query: 260 PLLTSEESSLPEQE---DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
             L +  + + + E      +               Q      F         +      
Sbjct: 391 QNLQTAGTEVQDLECRLRTQSGAAKYVLLSTAKVETQTQKGRLFILKDITARKAAEMALQ 450

Query: 317 EGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
                     D  P   F       L  AN  +           I     L   L     
Sbjct: 451 GQSTTLQTIFDAVPALIFYKDLENRLMRANQLWFETFGLSEAAVIGK--SLDEFLLKADA 508

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
                   + +  S+R        +         +L +        +     +   G   
Sbjct: 509 ERFYRDD-LEVIASNRAKKDILGEIQV----NGKTLWLKTQKIPYRDSAGRVVGIIGFSE 563

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
                +  + ++     +L  I++   D   +++ EG +++ NRA+ ++ G    ++L +
Sbjct: 564 NITAGKRAEDELLESRQRLSDIIDFLPDATFVMDEEGTVIAWNRAIEEMTGVKASEMLGR 623

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLD------------LRQTLEKITLGSTKEEKLLSLRI 543
               +            +  +L                   LE      + + +   L  
Sbjct: 624 GNYEYSLPFYGVRRPILIDLVLDHGCEFAGEYQGMTIKESMLEAEAFVPSLKGERACLYG 683

Query: 544 IIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAE--KESSHKSDFLARVSHEIR 597
               L  S    +    ++ DI+E K+ + +    +       ++         ++H+  
Sbjct: 684 KASVLRNSKGKIVGAIESIRDITERKRAEEERELLELQLRQVHKTEAIGTLAGGIAHDFN 743

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
             L  I+G++E +    F      R  E  + + ++ +   ++V  +LD S+        
Sbjct: 744 NILGIIMGYAE-LARMEFPRETTAR--ESIDEVLKATHRAKELVRQILDFSR----TREY 796

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI----LADLRSVKQIALNILS 713
             +P+ L   V E + L++         I    A  +P +    LAD   + Q+ +N+ +
Sbjct: 797 ERKPLRLVPVVKEVLKLLRASLPS---SIEMDQAEELPAVGDLVLADPTQIHQVLMNLAT 853

Query: 714 NAIHFTP-SGGQIIIS--------------TTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
           NA H      G++ ++                 +  + + L V DTG GM+   LE+   
Sbjct: 854 NAAHAMRGKEGRLRVALSPVSFDSLDPTRPVELSPGKYLDLAVEDTGHGMSQDILERIFD 913

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           P+     +    GEGTGLGL +A  +V  + G   +FS P +GT++ +  P+ ++  P
Sbjct: 914 PYFTTKKA----GEGTGLGLSVAHGIVKNHGGAIRVFSEPGQGTVVHVYLPVLESVEP 967



 Score = 73.1 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/387 (8%), Positives = 87/387 (22%), Gaps = 25/387 (6%)

Query: 70  SENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP 129
           SE  F              I     + +++E   + +G    ++ G     +     ++ 
Sbjct: 327 SEEKFRILFHSIPEPLALAIGDDAAVVDVNESFCRFLGLSRAEIEGRPFMVLDIWHDLED 386

Query: 130 NNHIGDLLKRQNTWYGKTTLWPI-EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNR 188
            + I +L                  G   YV +  A +   ++           I+    
Sbjct: 387 RDQIQNLQTAGTEVQDLECRLRTQSGAAKYVLLSTAKVETQTQKGRLF------ILKDIT 440

Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL--RMKNKVSSLTEY 246
                    +        + +        +  +  +              +  V   +  
Sbjct: 441 ARKAAEMALQGQSTTLQTIFDAVPALIFYKDLENRLMRANQLWFETFGLSEAAVIGKSLD 500

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFH--TINLNQYTKKQYFGTLQNNSKESFEYLS 304
                   +      L    S+  +++      +N      K      ++++      + 
Sbjct: 501 EFLLKADAERFYRDDLEVIASNRAKKDILGEIQVNGKTLWLKTQKIPYRDSAGRVVGIIG 560

Query: 305 ----HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDD 359
                           E      + +D  P   FV    G +   N +   +T  K+ + 
Sbjct: 561 FSENITAGKRAEDELLESRQRLSDIIDFLPDATFVMDEEGTVIAWNRAIEEMTGVKASEM 620

Query: 360 IEIAG--------GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411
           +            G+   +    + D+                   A         E + 
Sbjct: 621 LGRGNYEYSLPFYGVRRPILIDLVLDHGCEFAGEYQGMTIKESMLEAEAFVPSLKGERA- 679

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDV 438
            +        N   + +       +  
Sbjct: 680 CLYGKASVLRNSKGKIVGAIESIRDIT 706



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 23/175 (13%), Positives = 53/175 (30%), Gaps = 3/175 (1%)

Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458
           RL      +    +  F       +  E      I  E +  +  + ++     +   + 
Sbjct: 278 RLRDQVLRQGPGESWDFKVDTGPTEVIELASAFRIMSERI--KAREWELGKSEEKFRILF 335

Query: 459 EATSDGIAI-INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
            +  + +A+ I  +  ++  N +  +  G    +I  +PF V    +     +       
Sbjct: 336 HSIPEPLALAIGDDAAVVDVNESFCRFLGLSRAEIEGRPFMVLDIWHDLEDRDQIQNLQT 395

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572
           +    Q LE      +   K + L     +          + DI+  K  +  L 
Sbjct: 396 AGTEVQDLECRLRTQSGAAKYVLLSTAKVETQTQKGRLFILKDITARKAAEMALQ 450


>gi|30249267|ref|NP_841337.1| sensory transduction histidine kinase [Nitrosomonas europaea ATCC
           19718]
 gi|30180586|emb|CAD85199.1| Sensory transduction histidine kinases [Nitrosomonas europaea ATCC
           19718]
          Length = 452

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 82/415 (19%), Positives = 157/415 (37%), Gaps = 31/415 (7%)

Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK-MEIEVMQL 454
               +HT+    +             ++              V     +R  +   + +L
Sbjct: 42  VIYHIHTLYCLEQWLHHSDLSYATVPDRSGLWGVVFARLARFVRRHDKERLGLNTSLERL 101

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
                A  +GI I+  +  I   N A  +  G  +E    +  T  + Q           
Sbjct: 102 QRATSALPEGIVILGDKDQIEWCNSAAERHLGLNLEMDAGQHITRMVRQVRFVAYLDM-- 159

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA 574
                       K  L +    + + L I I          L   D++ +++ +      
Sbjct: 160 --------GDFSKPFLLNQSRLRDVLLSIQIVPYGD-REKLLISQDVTRFEKIEI----- 205

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
                     + DF+A VSHE+RTPLT I GF E +  +    +           +    
Sbjct: 206 ---------MRRDFVANVSHELRTPLTVIGGFLETLLEEN--KISGEMEKNALRLMSDQA 254

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
             +  +V DLL +S++E+   NL  E V + + +       Q  +  + + I  + A++ 
Sbjct: 255 IRMRRLVEDLLTLSRLENAGNNLTEEQVDVVKLLQGLYQEAQSLSAGRHV-ISLNLASHA 313

Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELE 754
             +L     ++    N++SNA+ +TP  G I ++     N + +  V+D+G+G+    + 
Sbjct: 314 -MLLGSEDELRSAFENLISNAVRYTPESGIISLNWVVE-NGKGLFYVQDSGIGIEPNHIP 371

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +  + F ++  S+     GTGLGL + K +++ +     I S P  G++  I FP
Sbjct: 372 RLTERFYRVDRSRSRETGGTGLGLAIVKHVLNRHQASMEITSQPGAGSIFRIWFP 426


>gi|323138197|ref|ZP_08073269.1| multi-sensor hybrid histidine kinase [Methylocystis sp. ATCC 49242]
 gi|322396449|gb|EFX98978.1| multi-sensor hybrid histidine kinase [Methylocystis sp. ATCC 49242]
          Length = 816

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 103/670 (15%), Positives = 209/670 (31%), Gaps = 46/670 (6%)

Query: 165 ALPIYSRNREFSGFR-GFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSV-EKEKY 222
           AL ++     F  F    G++  +             D     L   K     V   E Y
Sbjct: 29  ALALFGVAGIFFLFAYAVGLIQFSTRVARNDVTKLIADTSGEGLLVTKGDLQIVYANEAY 88

Query: 223 DIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQ 282
                      L+   ++ S     +     L           E                
Sbjct: 89  MALCGARDAAGLQAVERLFSGPPEVSEAIYRLAQAARAGTAHVEDLRLSPPLTGLGPFGW 148

Query: 283 YTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNL 341
           Y  +             +                +      + +D  P  FF V   G +
Sbjct: 149 YRIRVRPLPQAGPRAALWAVADVTADRQRQENVFQELQHAIDFLDHAPAGFFSVGPDGEI 208

Query: 342 FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401
            Y N +      Y           LST++     +   A+            +       
Sbjct: 209 SYMNKTLAGWLGYDLTQVGSGGATLSTVIANNGAALLAAVAG------SPGEVKTEQIDL 262

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
            ++     SL +  +      Q         +          +  +    ++      +T
Sbjct: 263 DLRCRNGRSLPVRLLHQVAFGQDGAAGASRTLVLNRAAGEQPEDNLRAAEVRFARFFNST 322

Query: 462 SDGIAIINREGIILSTNRAVSKLF-----GYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
              IA ++ EG +L +N A ++L      G    D         L +   + +   + + 
Sbjct: 323 PMAIATLDAEGRLLGSNAAFARLLPQALKGGQGSDSAPWAVLADLNERDSASLRSAIQDA 382

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKK 576
           +          +        +     +   +        +   D SE ++ + + + ++K
Sbjct: 383 VEGKSDIRPVNVAFDDGAAPRSARFFVSPAEDAGKKGAMIYALDTSEQRKLQEEFAQSQK 442

Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
           +     +        ++H+    LTAIIG+S+++ +       +P + +    I  + N 
Sbjct: 443 M-----NAVGQLAGGIAHDFNNMLTAIIGYSDLLLSSHRPT--DPAFRD-IRQIKETANR 494

Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696
              +   LL  S+    +  L  + + L +A+SE   L++    EK   +      ++  
Sbjct: 495 AAGLTRQLLAFSR----RQTLRPQVLQLSDALSELQILLRRVVGEKN-ELDLRHGRDLWF 549

Query: 697 ILADLRSVKQIALNILSNAIHFTPS-GGQIIISTTHTSN--------------EEVILRV 741
           + AD+   +Q+ +N++ NA    P  GG++ I T +                 + V++ V
Sbjct: 550 VKADITQFEQVIINLVVNARDAMPETGGRVQIRTRNAPKADCAGFNEPELPSADYVLIEV 609

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            D+G G+     EK  +PF          G+GTGLGL     ++  + G  ++ S   +G
Sbjct: 610 EDSGSGIPPEVKEKIFEPFFTTK----EVGKGTGLGLSTVFGIIKQSGGFIFVDSEVGRG 665

Query: 802 TLIEIIFPLY 811
           T+  I  P +
Sbjct: 666 TIFRIFLPRH 675



 Score = 42.3 bits (98), Expect = 0.38,   Method: Composition-based stats.
 Identities = 26/314 (8%), Positives = 74/314 (23%), Gaps = 8/314 (2%)

Query: 79  IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK 138
                 F +++   G +  +++ L   +G    ++ G     +S ++  +    +  +  
Sbjct: 193 DHAPAGF-FSVGPDGEISYMNKTLAGWLGYDLTQV-GSGGATLSTVIANNGAALLAAVAG 250

Query: 139 RQNTWYGKTTLWPIEGTNLY-VPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG 197
                  +     +   N   +P+ L     + ++      R   +V        P    
Sbjct: 251 SPGEVKTEQIDLDLRCRNGRSLPVRLLHQVAFGQDGAAGASR--TLVLNRAAGEQPEDNL 308

Query: 198 KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257
           +  + +F+          +    +  +    +    L  +          A    +    
Sbjct: 309 RAAEVRFARFFNSTPMAIATLDAEGRLLGSNAAFARLLPQALKGGQGSDSAPWAVLADLN 368

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
           +    +   +     E    I                    S    + +    + A    
Sbjct: 369 ERDSASLRSAIQDAVEGKSDIRPVNVAFDDGAAPRSARFFVSPAEDAGKKGAMIYALDTS 428

Query: 318 GENLTPETVDKCP--IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
            +    E   +          + G     N     +  Y  +  +             + 
Sbjct: 429 EQRKLQEEFAQSQKMNAVGQLAGGIAHDFNNMLTAIIGYSDL-LLSSHRPTDPAFRDIRQ 487

Query: 376 SDNNAIKPVMLYRS 389
               A +   L R 
Sbjct: 488 IKETANRAAGLTRQ 501


>gi|323529678|ref|YP_004231830.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1001]
 gi|323386680|gb|ADX58770.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1001]
          Length = 781

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 77/493 (15%), Positives = 170/493 (34%), Gaps = 39/493 (7%)

Query: 337 SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA 396
             G +   NP    +  ++  + I     L     A + +       +   R +      
Sbjct: 32  EDGRIRSWNPGGEAIHGFREEEVIGQP--LEIFYTAEERAKGLPHTALATARREGR---F 86

Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
                 ++ + +     + +     +     +    I  +  D +     +     +   
Sbjct: 87  EGEGWRLRKDGK-VFWASVVLTALRSPDGGLVGFGEIVRDMTDKKTVHEAVLESERRFRL 145

Query: 457 ILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           +++  +D  I +++ EG++ + N    ++ GY   +I+   F+ F      +        
Sbjct: 146 LVDGVTDYAIFMLSPEGMVTNWNSGARRIKGYTASEIIGSHFSRFYTPEDAAKGLPQ-RG 204

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLS 572
           + +       E       K+       ++I  +        ++    DI+E  +    L 
Sbjct: 205 LAAAARDGRFESEGWRVRKDGTRFWAHVVIDAIRDGGTLVGFAKITRDITERMEATRLLE 264

Query: 573 HAKKIAEKES--SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
             +    +             V+H+    +  + G  E+++++      +    E  +  
Sbjct: 265 ETRVALVQSQKMEAIGKLTGGVAHDFNNVMQILRGNLELLESRH---KRDGWTRERLDKA 321

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
             +      + + LL   +    +  L    ++L  A+     L++  A  + + I T  
Sbjct: 322 IDAVERGAKLASQLLAFGR----QQPLRPIVINLAAAIRGMDDLLR-RALGETVQIETVV 376

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT--------------HTSNEE 736
           A  +   L D+  ++ + LN+  NA      GG++ +  +                + + 
Sbjct: 377 AGGLWNTLVDVHQLENVILNLAINARDAMKEGGKLTMEVSNAMLDDQYVVGFPDVPAGQY 436

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           V+L V DTG GM    +++A  PF          GEGTGLGL +A   V  + G   I+S
Sbjct: 437 VMLAVTDTGTGMPPEVVQRAFDPFFTTKP----EGEGTGLGLSMAYGFVKQSGGHIRIYS 492

Query: 797 TPAKGTLIEIIFP 809
               GT ++I  P
Sbjct: 493 EVGHGTTVKIYLP 505



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/128 (13%), Positives = 48/128 (37%), Gaps = 8/128 (6%)

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
           L S+ +     +  ++ +G I S N     + G+  E+++ +P  +F      +    + 
Sbjct: 19  LRSLRDY---AVTGLSEDGRIRSWNPGGEAIHGFREEEVIGQPLEIFYTAEERAKGLPH- 74

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKN 569
           T + +       E       K+ K+    +++  L       +     + D+++ K    
Sbjct: 75  TALATARREGRFEGEGWRLRKDGKVFWASVVLTALRSPDGGLVGFGEIVRDMTDKKTVHE 134

Query: 570 KLSHAKKI 577
            +  +++ 
Sbjct: 135 AVLESERR 142



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/319 (10%), Positives = 81/319 (25%), Gaps = 19/319 (5%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK---RQNTWYGKTT 148
            G ++  +       G    ++IG  L ++               L    R+  + G+  
Sbjct: 33  DGRIRSWNPGGEAIHGFREEEVIGQPL-EIFYTAEERAKGLPHTALATARREGRFEGEGW 91

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFG-IVHVNRVDNDPRALGKRLDKKFSHL 207
               +G   +  + L AL   S +    G  GFG IV                +++F  L
Sbjct: 92  RLRKDGKVFWASVVLTAL--RSPDG---GLVGFGEIVRDMTDKKTVHEAVLESERRFRLL 146

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHL----RMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
            +    ++        + +  +              + S    +   +D  K      L 
Sbjct: 147 VDGVTDYAIFMLSPEGMVTNWNSGARRIKGYTASEIIGSHFSRFYTPEDAAKGLPQRGLA 206

Query: 264 SEESSLPEQEDF--HTINLNQYTKKQYFGTLQN-NSKESFEYLSHRNHPSLSAYFDEGEN 320
           +       + +      +  ++        +++  +   F  ++      + A     E 
Sbjct: 207 AAARDGRFESEGWRVRKDGTRFWAHVVIDAIRDGGTLVGFAKITRDITERMEATRLLEET 266

Query: 321 LTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIA--GGLSTLLDAPKLSDN 378
                  +        + G     N    +L     + +      G     LD    +  
Sbjct: 267 RVALVQSQKMEAIGKLTGGVAHDFNNVMQILRGNLELLESRHKRDGWTRERLDKAIDAVE 326

Query: 379 NAIKPVMLYRSDRTCIAAS 397
              K      +        
Sbjct: 327 RGAKLASQLLAFGRQQPLR 345



 Score = 55.4 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/244 (8%), Positives = 51/244 (20%), Gaps = 10/244 (4%)

Query: 68  LDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI 127
           L+SE  F       T    + +   G +   +    +  G  A ++IG            
Sbjct: 137 LESERRFRLLVDGVTDYAIFMLSPEGMVTNWNSGARRIKGYTASEIIGSHFSRFYTPEDA 196

Query: 128 DPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187
                   L         ++  W +          +    I        GF    I    
Sbjct: 197 AKGLPQRGLAAAARDGRFESEGWRVRKDGTRFWAHVVIDAIRDG-GTLVGFAK--ITRDI 253

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYD-------IFSQQSPPPHLRMKNKV 240
               +   L +          +++          +D       +            ++  
Sbjct: 254 TERMEATRLLEETRVALVQSQKMEAIGKLTGGVAHDFNNVMQILRGNLELLESRHKRDGW 313

Query: 241 SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF 300
           +      A        +    L +     P +     +                 + +  
Sbjct: 314 TRERLDKAIDAVERGAKLASQLLAFGRQQPLRPIVINLAAAIRGMDDLLRRALGETVQIE 373

Query: 301 EYLS 304
             ++
Sbjct: 374 TVVA 377


>gi|149917886|ref|ZP_01906381.1| Serine/Threonine protein kinase and Signal Transduction Histidine
            Kinase (STHK) with GAF and PAS/PAC sensor [Plesiocystis
            pacifica SIR-1]
 gi|149821406|gb|EDM80808.1| Serine/Threonine protein kinase and Signal Transduction Histidine
            Kinase (STHK) with GAF and PAS/PAC sensor [Plesiocystis
            pacifica SIR-1]
          Length = 1891

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 106/703 (15%), Positives = 208/703 (29%), Gaps = 65/703 (9%)

Query: 157  LYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSS 216
               P  LAAL    R R  +  RG          +        L        +    +S 
Sbjct: 1208 ARPPRQLAALRHLERARTLAAARG---CRWLEGLSAELITQIALAPSPGSPDDALSSYSL 1264

Query: 217  VEK----EKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ 272
              +      Y  +  + P   LR  +    L ++   +            ++   SL   
Sbjct: 1265 GARLMALRAYSSWGARLPAERLREASLPDELADFGPREGSSGGRLAASTSSAPGRSLASS 1324

Query: 273  EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP 332
                      + +         +   S   ++                LT    D     
Sbjct: 1325 NKASLELRRGHGQGGVQALDYESVVRSVSAIAMGLGLDEVVAQVLRAALTNAGADH--GA 1382

Query: 333  FFVYSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTLLDA-PKLSDNNAIKPVMLYRSD 390
              +  +G +           T     +    +  L       P       ++       D
Sbjct: 1383 LVLERNGRVGLVGVAQLAPDTGEVESEVFPRSLALDQAEQRVPTSLIRLVMRTSQALILD 1442

Query: 391  RTCIAASARLH----------------TIQWNRENSLAMTFIPFEKA-----NQFPENMP 429
                 A+AR H                 ++ +      +              +      
Sbjct: 1443 DLEDPANARFHGDPYLDATAARSLLVMPVRLDDRPLGVLALEHHGSPGSFHAARLDALQL 1502

Query: 430  QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
              G     +D       +     +  S+++   D IA++   G +   NR+         
Sbjct: 1503 IVGQAARALDRARIHGALLESETRWRSLVDGAPDLIALLGERGRVEFVNRS------QGP 1556

Query: 490  EDILRKPFTVFLEQNTPS--VMNHYLTEILSLDLRQTLEKITLGSTKEE--KLLSLRI-- 543
                 +       +++      +  +   L       L+        +   +    R+  
Sbjct: 1557 RPDEHRAILERFAESSLPKQAWSQAVAAALEFSRGSELDLELPALAADTPARHFHARLAP 1616

Query: 544  --IIKKLPFSSCYSLTMHDISEWKQEKNKLSH--AKKIAEKESSHKSDFLARVSHEIRTP 599
                 +        +   +++  K+ + + S    +   ++         + V+HEI  P
Sbjct: 1617 LATPAEDHAQGRVIVIATEVTATKRAEAERSRLATQLRQQQRLEAIGTLASGVAHEINNP 1676

Query: 600  LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
            +  I+ ++E++   R  P       E+A  I R    V  IV DLL  S+ E  +    F
Sbjct: 1677 IQGILSYAELLDEDRDKP---EVVGEFALEIRRESERVATIVRDLLTFSRSEERQP---F 1730

Query: 660  EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF- 718
            E V     +   ++L+++     R+ +R       P +    + ++Q+ +N+++NA    
Sbjct: 1731 EAVRFASVLDSMMTLLRVTLEHDRVELRIVGLEQAPSLRCRPQQLRQVLINLITNARDAL 1790

Query: 719  ----TPSGGQ--IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
                T  G    I +  T      + +RV D G G+    L +   PF         R E
Sbjct: 1791 NSADTGEGAPKAIEVRVTSERPNWLTIRVEDNGPGIPPEVLPRIFDPFYTTKG----RHE 1846

Query: 773  GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            GTGLGL L+  +V  + G+  + S P +G    I  PL   + 
Sbjct: 1847 GTGLGLALSHGIVSEHGGQLSVDSPPGRGACFRIDLPLAGPAE 1889


>gi|124003498|ref|ZP_01688347.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Microscilla marina ATCC 23134]
 gi|123991067|gb|EAY30519.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Microscilla marina ATCC 23134]
          Length = 1338

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 76/248 (30%), Positives = 119/248 (47%), Gaps = 5/248 (2%)

Query: 563  EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
            E  Q+K +++   +  ++    KS F + VSHE+RTPLT IIG +E I +          
Sbjct: 805  ELAQQKEEIASQAEKLKEMDQIKSHFFSNVSHELRTPLTLIIGPAEQILHSAESTTT--- 861

Query: 623  YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
               ++  I  +   +L ++N LLD SK+ESGK+ L  +       +   I   +L AN+K
Sbjct: 862  -QSHSKSILSNAQRLLKLINQLLDFSKLESGKLILQLKTGKFHVFLKNIIYSFELLANQK 920

Query: 683  RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
             I ++            D   ++++  N+LSNA+ FTP  G + I         V ++V 
Sbjct: 921  NIGLKLLLHQEEIMGEFDHDKLEKVFFNLLSNALKFTPENGLVTIEVKQKEE-MVQIKVS 979

Query: 743  DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
            DTG+G+    L      F Q+  SQ    EGTG+GL L K +++ + G     S   KGT
Sbjct: 980  DTGIGIPPQSLPFIFDRFYQVDGSQTRTHEGTGIGLSLVKELLELHGGNIKASSEVDKGT 1039

Query: 803  LIEIIFPL 810
               I  P+
Sbjct: 1040 TFFIQLPI 1047


>gi|302558048|ref|ZP_07310390.1| sensor histidine kinase/response regulator [Streptomyces griseoflavus
            Tu4000]
 gi|302475666|gb|EFL38759.1| sensor histidine kinase/response regulator [Streptomyces griseoflavus
            Tu4000]
          Length = 1406

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 118/739 (15%), Positives = 250/739 (33%), Gaps = 58/739 (7%)

Query: 120  DVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFR 179
            D++  + I+    +  L    N      TL         V  ++    I        G  
Sbjct: 475  DLTRQVTIEARGELAQLADTIN--IMVRTLSSFAEQVTKVAREVGTDGILGGQAHVPGVA 532

Query: 180  GFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK 239
            G           +  A       +   +         + K K DI ++          N 
Sbjct: 533  G--TWKDLTESVNQMASNLTGQVRNIAMVTTAIAKGDLTK-KIDIDARGEILELKTTINT 589

Query: 240  VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
            +      +A +   +  E          +     D    +L +   +      +     +
Sbjct: 590  LVGQLSSFAEEVTRVAREVGTEGQLGGQARVRDVDGTWRDLTESVNEMAGNLTRQVRAIA 649

Query: 300  FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTK------ 353
                +            +      E  D             +  AN     L        
Sbjct: 650  RVATAVTRGDLNLKIDVDASGEIQELQDNINKMIANLRDTTI--ANKEQDWLKGNLARIS 707

Query: 354  --YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA-SARLHTIQWNRENS 410
               +   D+E    L      P +S  +    + +   D   +       + ++      
Sbjct: 708  ALMQGRRDLEDVASLIMSELTPVVSAQHGAFFLSMPLVDGEDVGVTEDDQYELRMLGSYG 767

Query: 411  LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470
             ++  +P                +   +        ++I       + EA    + ++  
Sbjct: 768  YSLGSMPTTFRPGEGLIGTAAMEKRTILVENAPSGYLKISS----GLGEAPPAQVIVLPV 823

Query: 471  --EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY-----LTEILSLDLRQ 523
              EG +L       +L  +     ++K F   + +   + +N          +L+     
Sbjct: 824  LFEGTVLGV----IELASFTPFTHIQKDFLNQIAEMIATSVNTISVNTKTESLLAQSQEL 879

Query: 524  TLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT-MHDI----SEWKQEKNKLSHAKKIA 578
            T +     +  E++  +L+    +L   +        DI    +E ++ +  L    +  
Sbjct: 880  TEQLRERSAELEQRQKALQASNAELEEKAELLARQNRDIEVKNTEIEEARQVLEERAEQL 939

Query: 579  EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
                 +KS+FLA +SHE+RTPL +++  ++++ +     L  P+ +E+A  I  +G+ +L
Sbjct: 940  AVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNADANLS-PKQVEFAETIHGAGSDLL 998

Query: 639  DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RI 697
             ++ND+LD+SK+E+GKM++    ++L + V    +  +    EK + +    +  +P  +
Sbjct: 999  QLINDILDLSKVEAGKMDVSPTRIALVQLVDYVEATFRPLTAEKGLDLSVRVSPELPATL 1058

Query: 698  LADLRSVKQIALNILSNAIHFTPSGGQIII--------------------STTHTSNEEV 737
              D + + Q+  N+LSNA+ FT SG   ++                    S T      +
Sbjct: 1059 HTDEQRLLQVLRNLLSNAVKFTDSGSVELVIRPARDDVPQAIREQLLETGSLTDPDGGLI 1118

Query: 738  ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
               V DTG+G+   ++    + F Q   +   +  GTGLGL +++ +     G+ +  S 
Sbjct: 1119 AFSVSDTGIGIAASKMRVIFEAFKQADGTTSRKYGGTGLGLSISREIAQLLGGEIHAQSE 1178

Query: 798  PAKGTLIEIIFPLYDTSHP 816
            P +G+   +  PL  +  P
Sbjct: 1179 PGRGSTFTLYLPLNPSELP 1197


>gi|254696348|ref|ZP_05158176.1| sensory box histidine kinase, hypothetical [Brucella abortus bv. 2
           str. 86/8/59]
          Length = 581

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 119/587 (20%), Positives = 227/587 (38%), Gaps = 43/587 (7%)

Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ--------NNS 296
                    + +E   L  ++     E++ F    + +       G  +          S
Sbjct: 5   AVDMANASQVISEGRELFGAQARQRLERDRFAEPVVQEQLTAVVHGDRRVFDVIDVSAES 64

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYK 355
                        ++            ET+D+      ++     L + N +F+ L    
Sbjct: 65  GSVGLGFDLTEVQAVRDELSRTLKSHAETLDQLSTAVAIFDPEMKLQFFNQAFVKLWGL- 123

Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
            V  +E     + + D  +       +P      D    A  A         E    M  
Sbjct: 124 DVAWLETRPSNTLIFDRLRAEGKLPEQPEWRKWKDSLLSAYRAV--------EPEEHMWH 175

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI----LEATSDGIAIINRE 471
           +P  +  +   N    G      +    K ++E     L  +    L+  ++ +A+   +
Sbjct: 176 LPDTRTMRVVANPHPQGGVTWFFENMTEKFELEGRYNTLIKVQGETLDHLAEAVAVFGSD 235

Query: 472 GIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530
           G +  +N + + L+  P E +      ++  +       +    + +S       ++   
Sbjct: 236 GRLRLSNPSFAALWSLPSEMVREGTHISIIAKLCNQRGGDGLWEDFVSTVTGFLDQRDGR 295

Query: 531 ---GSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
                  +  +LS  ++           LT  D+++  + +  L    +  E     K+D
Sbjct: 296 MGQVELSDGAILSFAVVPLP---KGQTMLTFIDVTDTVRVERALKEKNEALELADQIKND 352

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           F+  VS+E+R+PLT IIGF+E+++   FG L N R +EY +YI  S +++L IVND+LD+
Sbjct: 353 FVQHVSYELRSPLTNIIGFTELLQTPAFGSL-NERQLEYLDYISTSSSVLLTIVNDILDL 411

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707
           + +++G M L    VS+ EA+S A S V     +  I +    A+++    AD   V+Q+
Sbjct: 412 ATVDAGIMELEIGDVSVVEAISAAASRVSERLRDHNIGLDVDIADDVDVFKADANRVRQV 471

Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN-- 765
             N+LSNA+++ P G  I++        +V+  V D G GM +  L+   K F   PN  
Sbjct: 472 LFNLLSNAVNYAPEGSNIVLQVA-RDGADVVFAVHDDGHGMPSEVLDTVFKRFQSYPNGG 530

Query: 766 ---SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
                 +          + K+ V+ + G+  I +   +GT +   FP
Sbjct: 531 RRRGAGLGLA-------IVKSFVELHGGRVEIDTGEERGTTVICRFP 570


>gi|302380593|ref|ZP_07269058.1| PAS domain S-box protein [Finegoldia magna ACS-171-V-Col3]
 gi|302311536|gb|EFK93552.1| PAS domain S-box protein [Finegoldia magna ACS-171-V-Col3]
          Length = 567

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 80/366 (21%), Positives = 167/366 (45%), Gaps = 33/366 (9%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           +++     + +I +   +G+ ++++   +LS N++   LFG        +PF      N 
Sbjct: 232 ELQERSTTIKTITDNMREGLILLDKNMNVLSVNKSAEFLFGASDSRYEGRPFISL---NR 288

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS---SCYSLTMHDIS 562
              ++  + +++S      +     G       + L + I  +      +   L + D S
Sbjct: 289 DLKIHSAIKDVISTKTAHHINIEMQG-------ILLSMYIAPVLDEENINGVLLFLVDES 341

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  + +                + +F A VSHE+++PLT+I G++E+I+N    P     
Sbjct: 342 DKIKAE--------------KRRREFSANVSHELKSPLTSINGYAEMIENNMVSP---EN 384

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             ++A+ I + G  +L+++++++ +SK++    N+     + ++ + E I   Q   + K
Sbjct: 385 VSKFASIIHQEGLRLLELIDNIIKLSKLDESGDNVEKTLFNPEKIIDEIIKSNQNKLDSK 444

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           +I I T    N   I  +   +K++  N+++NAI +    G+I IS     N++  +   
Sbjct: 445 QIEIITDLQENCL-IYGNENLIKEMIENLVTNAIKYNKISGKIKISI-FKDNDKTKIICE 502

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG+G+     ++  + F  +  S+  + E TGLGL + K +VD + G   + S    GT
Sbjct: 503 DTGIGIAEKYQKRVFERFFVVDKSRSSQ-ESTGLGLSIIKHIVDIHDGTIELESKLDVGT 561

Query: 803 LIEIIF 808
            I I  
Sbjct: 562 KITITI 567


>gi|298292394|ref|YP_003694333.1| integral membrane sensor hybrid histidine kinase [Starkeya novella
           DSM 506]
 gi|296928905|gb|ADH89714.1| integral membrane sensor hybrid histidine kinase [Starkeya novella
           DSM 506]
          Length = 1129

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 73/274 (26%), Positives = 145/274 (52%), Gaps = 6/274 (2%)

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
            + +   +   +L M +I   K+   KL  AK+ AE  +  KS ++  +SHE+RTPL AI
Sbjct: 636 RVAQEESNRQTALLMREIEAHKRTDAKLQKAKEAAEAANLAKSRYVVGISHELRTPLNAI 695

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +G++++++     P   P   +    + RS   +  +++ LLDISKIE+G+++L  + V 
Sbjct: 696 LGYAQLLERDTSIP---PHRRDAIRVVRRSAEHLSGLIDGLLDISKIEAGRLHLTRDEVR 752

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSG 722
           + + + + + + +L A  K I       + +P +   D + ++Q+ +N+LSNAI FT  G
Sbjct: 753 IADFLDQLVDMFRLQATAKGIDFVYVRPDRLPAVVYTDEKRLRQVLINLLSNAIKFTDRG 812

Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
            ++ +  ++  N+     V D+G+G+   +  +  +PF +   +      G GLGL + K
Sbjct: 813 -RVALRVSYR-NQVAEFEVEDSGIGIPAADHRRIFEPFERGERAGTYSTAGIGLGLTITK 870

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
            + +   G+  + STP +G+  ++   L + ++P
Sbjct: 871 LLTEIMGGEISLTSTPGEGSSFKVKLMLSEVTNP 904


>gi|70730996|ref|YP_260737.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68345295|gb|AAY92901.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens
           Pf-5]
          Length = 918

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 92/612 (15%), Positives = 196/612 (32%), Gaps = 49/612 (8%)

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
            L    +    V+     +         +    + ++            K    P L   
Sbjct: 92  ALVLTARDLVEVDSTHSQLLYLVPEQGLVSTLYEPAATGTGQPPS----KAVDAPWLRQL 147

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
           +    +                     +           H +   L     E +      
Sbjct: 148 DQRAVQDLLARHPEARTLWYWAGIDGNKQVYLLRPVDEHHASEGWLGLELTEIDLALDPL 207

Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
                      + G L   + ++ +      +   E + GL  L              ++
Sbjct: 208 GLHQGKYLLYDADGALVLHSANWQVPGSLSRLQADEDSFGLHRL--------GGLPDYIV 259

Query: 386 LYRSDRTCIAASARLHTIQ--WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
           L +S             +            T +           +    I    V+  + 
Sbjct: 260 LNKSVGNAGWRLVYYAPVSQLLRDSRGPLYTTLLVTLLLFAVIFLGARYIRLRLVEPAVR 319

Query: 444 K-RKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
               +   V      +E    G+ ++ R+ G ++  N +  +                  
Sbjct: 320 HYSALADSVSLNRRFIEVAPVGLCLMRRDNGRLILCNESGRRWL---------------- 363

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDI 561
                + +      IL     +        +  +   + L          +     + D+
Sbjct: 364 -----ASVPGLRERILDEPPARVHAIE--HALDDGTFIQLTCAPTGYNGVAAVLCCISDV 416

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           +++K  +  L  AK ++++ +  K+ FL+ +SHEIRTP+  I+G  E+++          
Sbjct: 417 TDFKVAEQSLLQAKLLSDQANHEKTLFLSTLSHEIRTPMYGILGSLEMLRTTALSA---- 472

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
           +  +Y     ++ + ++  +ND LD+S IESG+++L   P S    V E        A  
Sbjct: 473 QQGDYLEATQQASSALMRTINDTLDMSLIESGRLSLTSAPFSPVRLVEEVAFSYSARARS 532

Query: 682 KRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----E 736
           K + +  +   N+   ++ D   ++QI  N++SNAI FT SG  +++     +       
Sbjct: 533 KGLRLYVTLDPNVAERVVGDGERIRQILNNLVSNAIKFTESG-HVVLRLHAEAGPSQAPR 591

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           +  +V D+G G+         +P+ ++P+    +  GTGLGL + + +     G+    S
Sbjct: 592 LRFQVVDSGPGIAPEFQANLFEPYYRVPSWLGQKAPGTGLGLAICQRLATMMQGQLSAIS 651

Query: 797 TPAKGTLIEIIF 808
            P  G+      
Sbjct: 652 EPGLGSSFSFSL 663


>gi|163847394|ref|YP_001635438.1| histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|222525240|ref|YP_002569711.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
 gi|163668683|gb|ABY35049.1| Histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|222449119|gb|ACM53385.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
          Length = 718

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 82/616 (13%), Positives = 197/616 (31%), Gaps = 48/616 (7%)

Query: 222 YDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLN 281
             ++   +P P       +++L    +    ++            + +          L 
Sbjct: 118 GLLYPFTTPSPWTDNPLTLTTLVPVGSFLLSIITVLALVWFGQRRNLVALDWRARYDQLR 177

Query: 282 QYTKKQYFG---TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH 338
           +  K+Q  G   +  +  +      +        +     +++  + +D       V   
Sbjct: 178 REQKQQVAGLEASNNDLRERLRRMEALGESLRAISSSLSLDDVLRQILDSLTHMLGVQRI 237

Query: 339 GNL-------------FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
            N+                N +            +        L       +        
Sbjct: 238 DNVALTLARDNGLEHQILHNDAQQSDWATALAQVVITEKRTVLLDAHEIAQEPVWHSLAD 297

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
                   +         +     S+           +       +      +       
Sbjct: 298 QQWQAALSVPLFDPDQPDRIRGALSVVSRQSEAFSPAEERHLTSFSIQAMIAIRNAELHV 357

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           ++  +   L +IL   +DG+ + +  G +   N    +   +                  
Sbjct: 358 QLSRQQAMLSAILHDMADGLIVYDEAGNVYLDNAVARQAIAHSAA----------YNGRL 407

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK-KLPFSSCYSLTMHDISEW 564
              +     ++    +  + E I  G  ++ +   +   +    P +    L +HDI++ 
Sbjct: 408 ADHLIDTARQLYQSKVSFSKE-IIDGEAEQARWYQIHATLVNPSPDTCLAVLVLHDITDQ 466

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV-IKNQRFGPLGNPRY 623
           K ++                + +F+ +++HE+R PL  + G  ++ +K            
Sbjct: 467 KVQE--------------RQRREFIGKLAHELRNPLNVLNGNLDIVLKESDKVGTLTEAQ 512

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
             +   +  S   +   + +L++I++  + ++ L     ++ + +       Q  A    
Sbjct: 513 RYFLGEVKDSYKRLWKRIEELIEINRNGTSQLKLRPVRTNIIDIIINTCVQQQQPAKSHG 572

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
           + +     + +P +  D   + Q+  N++ NAI   P GGQI +S     +  V++ V D
Sbjct: 573 VDLCWEVPDQLPDMFLDEERIGQVLTNLIENAIKAMPDGGQITVSAEQQQD-YVLVHVTD 631

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQ-IRGEGT--GLGLPLAKAMVDANMGKFYI-FSTPA 799
           TG+G+   ++EK   P+ Q+P+       + T  GLGL + K  V+A+ G+ +I  S   
Sbjct: 632 TGIGIPADQIEKVFLPYHQVPSHVNGRETKNTHLGLGLAICKQFVEAHNGRIWISHSEVG 691

Query: 800 KGTLIEIIFPLYDTSH 815
           KGT      P+   + 
Sbjct: 692 KGTRFTFSLPIMPETE 707


>gi|325290339|ref|YP_004266520.1| multi-sensor hybrid histidine kinase [Syntrophobotulus glycolicus
           DSM 8271]
 gi|324965740|gb|ADY56519.1| multi-sensor hybrid histidine kinase [Syntrophobotulus glycolicus
           DSM 8271]
          Length = 894

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 74/248 (29%), Positives = 127/248 (51%), Gaps = 8/248 (3%)

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            K+ +  +  AK+ AE  +  KS+FLA++SHEIRTPL  IIG+ + +    F      + 
Sbjct: 294 RKKAEETMKAAKEEAETANKAKSEFLAQMSHEIRTPLHTIIGY-QYLLENTF---LEEKQ 349

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            EY   +  +   +L+I+N++LD SK+E+ KM L      L   + +  S++++    K+
Sbjct: 350 TEYVRNLGLASKNLLEIINEILDFSKLEAKKMVLEAVDFDLYLLIEDLCSMLEVEIRRKK 409

Query: 684 ILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEV--IL 739
           +    +   ++PR +  D   +KQ+ LN+LSN I FT  G  Q+ +      N  V    
Sbjct: 410 LQFNFTIKPDVPRYLKGDTTRLKQVILNLLSNGIKFTHEGSLQLFVELKEQKNRTVMLCF 469

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V DTG+G+   ++E+  + F Q   S   +  G+GLGL ++K +V    G  ++ S   
Sbjct: 470 HVADTGIGIPQRQIEQLFEVFTQGDTSTSRKYGGSGLGLAISKKIVRLMGGDIFLKSVVG 529

Query: 800 KGTLIEII 807
           +G+     
Sbjct: 530 EGSTFSFT 537


>gi|312961645|ref|ZP_07776143.1| multi-sensor hybrid histidine kinase [Pseudomonas fluorescens WH6]
 gi|311283904|gb|EFQ62487.1| multi-sensor hybrid histidine kinase [Pseudomonas fluorescens WH6]
          Length = 917

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 79/243 (32%), Positives = 142/243 (58%), Gaps = 8/243 (3%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  A+K A + S  KS+FLA +SHEIRTPL  I+GF+ +++     P    R ++Y   
Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSELTP----RQLDYLGT 325

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I++S + +L I+N++LD SKIE+GK+ L   P +L + + + ++++   A+ K++ + + 
Sbjct: 326 IEKSADNLLGIINEILDFSKIEAGKLVLDSIPFNLRDLLQDTLTILAPAAHAKQLELVSL 385

Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQI---IISTTHTSNEEVILRVRDTG 745
              + P  ++ D   +KQI  N++SNAI FT  G  +   +I      N ++ + V+DTG
Sbjct: 386 VYRDTPLSLVGDPLRLKQILTNLISNAIKFTREGTIVARAMIEDEQEDNVQLRISVQDTG 445

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+++ ++    + F Q  NS   +  GTGLGL ++K +++   G+  + STP +G+   
Sbjct: 446 IGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFW 505

Query: 806 IIF 808
           I  
Sbjct: 506 ISL 508


>gi|189467145|ref|ZP_03015930.1| hypothetical protein BACINT_03529 [Bacteroides intestinalis DSM
           17393]
 gi|189435409|gb|EDV04394.1| hypothetical protein BACINT_03529 [Bacteroides intestinalis DSM
           17393]
          Length = 979

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 81/392 (20%), Positives = 155/392 (39%), Gaps = 30/392 (7%)

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDG---------IAIINREGIILSTNRAVSKLFG 486
           +       +  +     +L   L               +     E I+   N    +   
Sbjct: 453 DITARNEAENALREINKKLEMTLSVARIIPWRWDLKNDMITCESEQILAHMNFTKEEGST 512

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL--SLRII 544
                I    +   +       M      ++S  L+   E+  + +  E +     L   
Sbjct: 513 PQAHIIKASEYFRKMHPEDLERMQQVHKNLISGKLQHAKEEFRIITEVEGRKFIDWLETN 572

Query: 545 IKKLP-FSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                            ++  I+E K+++  L  A++ A +    KS FLA +SHEIRTP
Sbjct: 573 AIVDQYDEQGSPISLVGSLLLITERKRQEKALIAAREKALESERLKSAFLANMSHEIRTP 632

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L AI+GFS ++              E+ + I+ +  L+L +V+D+LD+SKIE+  +  ++
Sbjct: 633 LNAIVGFSSLL----TATEDEQEREEFISIIENNNQLLLQLVSDILDLSKIEANTLEFNY 688

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719
             V L+    +  S V+       +++          +  +   + Q+ +N+L NA  FT
Sbjct: 689 RDVDLNGLAKDVESTVRRRLKP-NVVLEFIPGAAQCHVQTEKNRLSQVLINLLVNATKFT 747

Query: 720 PSGGQIIISTTHTSNE-EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
            +G    I+  +     E+   V+DTG+G++  +  K  + F ++        +GTGLGL
Sbjct: 748 QTGS---ITFGYEIRGKELYFYVKDTGMGISQEDQNKIFERFTKVDTFT----QGTGLGL 800

Query: 779 PLAKAMVDANMGKFYIFST-PAKGTLIEIIFP 809
            + K +++   G+  + S    KG+      P
Sbjct: 801 SICKNIIEKMKGRIGVESEGKGKGSTFWFTVP 832


>gi|46580534|ref|YP_011342.1| sensory box histidine kinase/response regulator [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|46449953|gb|AAS96602.1| sensory box histidine kinase/response regulator [Desulfovibrio
           vulgaris str. Hildenborough]
          Length = 823

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 104/640 (16%), Positives = 199/640 (31%), Gaps = 48/640 (7%)

Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD 251
            P      L +   H         +             P   + ++  +  L+   A   
Sbjct: 58  APEEDIHALARTLHHAGIAAAYTLATTPHTLSSALIDEPWDMVLVRPGLPGLSPTDALHL 117

Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN-SKESFEYLSHRNHPS 310
                     +        E                    L  + ++ + E    R H  
Sbjct: 118 ARAARSDLQCVALLHREETESAMALLKGGMDDVVVADDPILPAHMTRLAREAARRREHSR 177

Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
           L              VD   +  F     G+L +AN +F  +  +     +         
Sbjct: 178 LWRDMRHDVQQWRGMVDNTLLGIFRCQPWGDLVHANAAFAHILGHDDPAALVQQLRTE-- 235

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
            +   L  N     +             A LH +         +        +   E + 
Sbjct: 236 -NRSFLDKNRMEHFLSRLSERDCIDDFEADLHKV---DGTLTRVMLHARIIRDDNGEALS 291

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
             G   +    +  +  +     +     ++  D I I + E  I   N+A+ +L G   
Sbjct: 292 IEGTMEDIERRKSFEAVIINAKQEWEKTFDSVPDVIIIFSPELRIRRCNKALGRLLGLHP 351

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK-- 547
            D++ +     L   +       L          T E        +     + +   +  
Sbjct: 352 RDLVGRRCEEVLGSGSSPNDACALLRSQESAGFSTGELHLPFLGGD---FLVTLSPLQTG 408

Query: 548 --LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
                +    +  HDIS  K+ +++L  A+K+              ++H+    L  ++G
Sbjct: 409 QNDEPAGDIVMVAHDISNRKRLESQLRQAQKM-----EAIGTLAGGIAHDFNNILGVMMG 463

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
           ++E+  +Q      +       + +  +G    DI++ +L +S+ E        + +SL 
Sbjct: 464 YTEMSLDQ---ADEDSPMHRRLSEVLEAGKRARDIIHQILTMSRQE----EPSRQMLSLS 516

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP-SGGQ 724
             V E + L++       + IR    +  P +LA+   ++Q+ +N+ +NA H     GG 
Sbjct: 517 SPVRETLRLLRATLPA-NVDIRVDIEDTAP-VLANQSQIQQVVMNLCTNAAHAMRAKGGV 574

Query: 725 IIISTTHTS--------------NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           + ++                        LRVRDTG G+ +   E    PF          
Sbjct: 575 LTVALDAVDLSAEEAQQRSLEGPATFARLRVRDTGHGIPSEIRENIFDPFFTTKKPD--- 631

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            EGTG+GL L   +V  + G     ST   GT  EI+ P+
Sbjct: 632 -EGTGMGLALVHGIVTGHGGHVSFTSTAGFGTEFEILLPV 670



 Score = 43.1 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 33/331 (9%), Positives = 86/331 (25%), Gaps = 22/331 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIG-NYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144
            +     G L   +      +G +    ++     +    L  +   H    L  ++   
Sbjct: 200 IFRCQPWGDLVHANAAFAHILGHDDPAALVQQLRTENRSFLDKNRMEHFLSRLSERDCID 259

Query: 145 GKTTLWP-IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                   ++GT     + L A  I   N E     G   +          A+     ++
Sbjct: 260 DFEADLHKVDGTLTR--VMLHARIIRDDNGEALSIEG--TMEDIERRKSFEAVIINAKQE 315

Query: 204 FSHLHEIKKGH----------SSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253
           +    +                   K    +          R   +V            +
Sbjct: 316 WEKTFDSVPDVIIIFSPELRIRRCNKALGRLLGLHPRDLVGRRCEEVLGSGSSPNDACAL 375

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
           L++++    ++ E  LP             T         +        ++H        
Sbjct: 376 LRSQESAGFSTGELHLPFLG-----GDFLVTLSPLQTGQNDEPAGDIVMVAHDISNRKRL 430

Query: 314 YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
                +    E +         +   N+      +  ++  ++ +D  +   LS +L+A 
Sbjct: 431 ESQLRQAQKMEAIGTLAGGIA-HDFNNILGVMMGYTEMSLDQADEDSPMHRRLSEVLEAG 489

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
           K + +   + + + R +       +    ++
Sbjct: 490 KRARDIIHQILTMSRQEEPSRQMLSLSSPVR 520


>gi|89092215|ref|ZP_01165169.1| two-component sensor PhoR [Oceanospirillum sp. MED92]
 gi|89083303|gb|EAR62521.1| two-component sensor PhoR [Oceanospirillum sp. MED92]
          Length = 468

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 79/404 (19%), Positives = 150/404 (37%), Gaps = 40/404 (9%)

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL-------EATSDGIA 466
                +++ + PE     G   +++     ++       +L +I+        A  D I 
Sbjct: 54  WLQSRDESQEPPEAPGHWGELFDELSRIQRRQ--SGRENRLRNIITRFQESTSALPDAIL 111

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
           II++   +   N + ++L G   +D   KP    L          Y       D      
Sbjct: 112 IIDKSNNMEWWNGSANRLLGLSNKDDRGKPVMNLLRD---PRFIRYYKRAQYTDP----- 163

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
                 +     + ++  I +            D+S   + +                + 
Sbjct: 164 --ITLPSPAHTDIQIQYQITRFGEGDRIL-VARDVSRLMRLEQT--------------RQ 206

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
           DF+A  SHE+RTPLT I G+ E   +Q          +     + +    + ++V+DLL 
Sbjct: 207 DFVANASHELRTPLTVIRGYLETFLDQELPRP----LLRGLGSMQQQARRMENLVSDLLL 262

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706
           +S++E+       +P+ L   V+  +   +   NEK    +     +   +      +  
Sbjct: 263 LSRLEASHQISDEQPIQLQSVVNHIMEGAEQLGNEKGHRFKLDIDPD-HDLCGQEIELHS 321

Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
              N++ NA+ +TPS G I +             V+D G G+ +  L +  + F ++  S
Sbjct: 322 AFSNLVYNAVRYTPSEGDISVKWWVDDQG-AHFSVKDNGPGIESIHLPRLTERFYRVDES 380

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           +     GTGLGL + K ++  + G+  I S   KG+     FPL
Sbjct: 381 RSSASGGTGLGLAIVKHVLARHNGQLTIKSKIGKGSTFACHFPL 424


>gi|297807105|ref|XP_002871436.1| hypothetical protein ARALYDRAFT_909030 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297317273|gb|EFH47695.1| hypothetical protein ARALYDRAFT_909030 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 923

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 88/421 (20%), Positives = 158/421 (37%), Gaps = 53/421 (12%)

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
           +E +    +   + +E     L  IL+     +   +++   L        L     +DI
Sbjct: 201 MESQSAPVQELTQNLERAEGFLHFILQNAPIVMGHQDKDLRYLFIYNKYPSL---REQDI 257

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
           L K                +  E+L        E          K   + +         
Sbjct: 258 LGKTDVEIFHGGGVKESQDFKREVLEKGKASKREITFTTDLFGSKTFLIYVEPVYNKAGE 317

Query: 553 --CYSLTMHDISE-----------------WKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
               +    +++E                  K  +++L+    I E+    K   LA +S
Sbjct: 318 KIGINYMGMEVTEQVDKREKMAKLREDNAVRKAMESELNKTIHITEETMRAK-QMLATMS 376

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HEIR+PL+ ++G +E++   R     +    +  N +  SG+LVL ++ND+LD+SK+ESG
Sbjct: 377 HEIRSPLSGVVGMAEILSTTRL----DKEQRQLLNVMISSGDLVLQLINDILDLSKVESG 432

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNIL 712
            M L        E V   +        +K + +  + A+++P  ++ D+  ++QI  N++
Sbjct: 433 VMKLEATKFRPREVVKHVLQTAAASL-KKSLTLEGNIADDVPIEVVGDVLRIRQILTNLI 491

Query: 713 SNAIHFTPSGGQ-IIIST-----------------THTSNE------EVILRVRDTGVGM 748
           SNAI FT  G   I +                       N        +   V DTG+G+
Sbjct: 492 SNAIKFTHEGNVGIKLQVISEPSFARDNTLTADTEEQEQNGLTETSVWICCDVWDTGIGI 551

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
               +    K + Q       +  GTGLGL + K +V+   G+  + S   +G+    I 
Sbjct: 552 PENAIPCLFKKYMQASADHARKYGGTGLGLAICKQLVELMGGQLTVTSRVNEGSTFTFIL 611

Query: 809 P 809
           P
Sbjct: 612 P 612


>gi|218248943|ref|YP_002374314.1| histidine kinase [Cyanothece sp. PCC 8801]
 gi|218169421|gb|ACK68158.1| histidine kinase [Cyanothece sp. PCC 8801]
          Length = 828

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 76/267 (28%), Positives = 136/267 (50%), Gaps = 5/267 (1%)

Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
            +      Y +   D++E ++   +L+       + +  K +FLA +SHE+++PLTA++G
Sbjct: 290 SEDLGGEIYLVLATDVTEQQRLCQELAAKNADLVQLNRLKDEFLACISHELKSPLTAVVG 349

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
            S ++  Q+ G L N R + YA  I RSG  ++ +VNDLLD++++E+G++ L F P+++ 
Sbjct: 350 LSSLLGEQKVGEL-NTRQVHYAELIYRSGRQLMTLVNDLLDLTRLETGQLKLSFLPLNIK 408

Query: 666 EAVSEAISLVQLYANEKR---ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
                A   +      K    + I       +  ILAD   + Q+ +++L NA+ FT + 
Sbjct: 409 NICERAYHSIIEKYQSKTDVPLSINLDIEPALKFILADELRLHQMLVHLLDNAMKFTQAE 468

Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
           G++ I  +   N  +   V DTG+G+         + F Q+ N    + EGTGLGL L +
Sbjct: 469 GKVGIRVSRWEN-WIAFTVWDTGIGIPEESQHLIFQKFQQLENPLTRKFEGTGLGLVLTQ 527

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFP 809
            +  A+ G     S   +G+   ++ P
Sbjct: 528 RLARAHGGDISFISKEGQGSQFTLLLP 554


>gi|293603145|ref|ZP_06685579.1| phosphate regulon sensor histidine kinase protein PhoR
           [Achromobacter piechaudii ATCC 43553]
 gi|292818539|gb|EFF77586.1| phosphate regulon sensor histidine kinase protein PhoR
           [Achromobacter piechaudii ATCC 43553]
          Length = 435

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 82/450 (18%), Positives = 174/450 (38%), Gaps = 32/450 (7%)

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
            L TL      +    +   ++       +  +A    + W       ++          
Sbjct: 3   WLRTLFLVALWAVIALLAQWLIGDPAGWIVLCTALAAMLLWRSWRLTLVSHWANHPDTSP 62

Query: 425 PENMPQNGIEPEDVDT--RINKRKMEIEVMQLCSIL---EATSDGIAIINREGIILSTNR 479
           P ++         +    R   R++      +  +L   +A  DG   +N +  I   NR
Sbjct: 63  PASVGPWDDILAPLYRYTRARARELTETRDTMQGMLAAAQALPDGAVTLNEDFQIDWCNR 122

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
              +  G  +           L          ++         + +  + LG   +E+L+
Sbjct: 123 MARQHLGLRLPADRGHNLLNLLRAP------EFVEYAHRSAWPEPI-LVRLGQQGQERLM 175

Query: 540 SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
            +++       S+   L   D+++ ++ +                + DF+A VSHE+RTP
Sbjct: 176 MMQLTAY---ASNQRLLITRDVTQIERLETT--------------RRDFVANVSHELRTP 218

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           LT + GF E +++     L   +  +Y + +      +  IV DLL +S +ES   +   
Sbjct: 219 LTVLAGFLETLRDMPADALPEEQRAQYIDMMHEQAQRMQAIVEDLLTLSTLESSPGS-DP 277

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719
             +++   + +A   ++  +  + + ++    + +  +L     +     N+L+NA+ +T
Sbjct: 278 RAINMSALLQKARQQIEALSGGRHV-LQWHIDDTL-DVLGAETELTSALSNLLTNAVRYT 335

Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
           P GG I +     ++      V+DTG+G+    L +  + F ++   +     GTGLGL 
Sbjct: 336 PDGGTITVRWEREADGGARYSVQDTGIGIPARHLPRLTERFYRVDRGRSRAVGGTGLGLA 395

Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           + K +   +  +  I S P KG++  + FP
Sbjct: 396 ITKHIAMRHDAELLITSEPGKGSVFALRFP 425


>gi|156973340|ref|YP_001444247.1| phosphate regulon sensor protein [Vibrio harveyi ATCC BAA-1116]
 gi|156524934|gb|ABU70020.1| hypothetical protein VIBHAR_01027 [Vibrio harveyi ATCC BAA-1116]
          Length = 432

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 71/364 (19%), Positives = 149/364 (40%), Gaps = 29/364 (7%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           ++   + +  +  E+  D + +   EG I+  N+    L G+   +   +P +  +    
Sbjct: 92  ELTNLIRRFRNGAESLPDAVVVFRAEGNIVWCNKLAQHLLGFHWPEDSGQPISNLIRTPD 151

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
                +       L++R  L    +          L + I        + + + D+S+ K
Sbjct: 152 FIKYINKQDFSEPLEMRSPLNVERM----------LELRIVPYTEGE-HLMVVRDVSQLK 200

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           Q +                + +F A VSHE+RTP+T + G+ E+   +    +  P + +
Sbjct: 201 QLEG--------------MRRNFFANVSHELRTPMTVLQGYLEM--TEDPDMIVGPMWTK 244

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
               +    N +  +VN LL +SKIE+  M+   + V++   +          + + +  
Sbjct: 245 AHGVMTEQLNRMNSLVNQLLTLSKIEAAPMHELEDVVNVPIMLEVLEKEAVSLSGDDQHQ 304

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           ++    +++ R+L D   ++    N++ NA+ +TP G  I +    T+     L V D+G
Sbjct: 305 LKFDVDSSL-RVLGDDDQLRSAISNLVYNAVKYTPPGAHINVRWYQTAQG-ACLEVEDSG 362

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
            G+    L +  + F ++  ++     G+GLGL + K  +  +     I+S    G+   
Sbjct: 363 DGIEPQHLHRLTERFYRVDKARSRDTGGSGLGLAIVKHALSHHDSHLEIYSEVGVGSKFS 422

Query: 806 IIFP 809
            I P
Sbjct: 423 FILP 426


>gi|196228263|ref|ZP_03127130.1| integral membrane sensor hybrid histidine kinase [Chthoniobacter
           flavus Ellin428]
 gi|196227666|gb|EDY22169.1| integral membrane sensor hybrid histidine kinase [Chthoniobacter
           flavus Ellin428]
          Length = 1079

 Score =  280 bits (716), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 102/628 (16%), Positives = 217/628 (34%), Gaps = 61/628 (9%)

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK-YPLLTSEESS 268
              G +S   E   I   ++  P L     + +     A  D           +   ++ 
Sbjct: 33  HSLGVASARHELQGIEYARALLPVLHDVQLLRASDATAAEGDRARHRADLQHDMAQLDAV 92

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA-YFDEGENLTPETVD 327
                    ++       +    +      +                  E  + +  T+D
Sbjct: 93  DARLRANLRLSQKWAALAERCRKILEAPPSAGTQDELARIARSGLGLIQEVADHSELTLD 152

Query: 328 KCPIPFFVYSHG------NLFYANPSFLLLTKYKSVDDI---------EIAGGLSTLLDA 372
             P  ++    G      +    + ++  LT       +          I G +  L   
Sbjct: 153 PEPGSYYFMDLGLLKLPEHAELVSQAWSRLTAGAPGQPLDTTTRYDLRRITGVIDYLHTQ 212

Query: 373 PKLSDNNAIKPVMLYRSD-----RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
              +   A                   +    L +  W  E S   T +       +   
Sbjct: 213 ASEALAKAQTAAPQAAGHLQIPKPVSDSIERALSSNTWRLEPSTLATALTARLDADYQLA 272

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
              + +  + +  RI++ +          ++ +   G+  +    +I+S         G+
Sbjct: 273 DKVSFVLVDLLHQRIDRLQ--------RRVILSLVIGVLGL----LIVSA-------LGW 313

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE---EKLLSLRII 544
            +   + +P          +         L   +     +  +G   +     +++ R  
Sbjct: 314 SLIRDITQPL-----GELSTTAQAIEEGELDAPVTVRHRRDEIGRLADALRRMIIAQRQS 368

Query: 545 IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
            +KL  ++   L  ++  + K  + +  H    A   +  K DFLA +SHEIRTP+  II
Sbjct: 369 RQKLVENNLEMLAANEKLQAKTAEAE--HLAVEATAANRAKRDFLAVMSHEIRTPMNGII 426

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           G +E+  N    P+      EY   +  S   +L+++ND+LD SKIE+G++ L      L
Sbjct: 427 GMTELALNSGVTPI----QQEYLEMVRSSAETLLELLNDILDFSKIEAGRLELEHIDFDL 482

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG 723
            + + + +  + + A+   + +      ++P  +  D   ++Q+ +N++ NA+ FT  G 
Sbjct: 483 RDLLGDTMQALGVRAHAHGLELALQIRPDVPDALTGDPHRLRQVVVNLVGNALKFTERG- 541

Query: 724 QIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
           ++ +   +  + +    +   VRDTG+G+      +    F Q  +S   R  G+GLGL 
Sbjct: 542 EVTVLVENDPSGDEKVRLRFVVRDTGIGIPPEAQARIFNAFSQADSSTTRRFGGSGLGLA 601

Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEII 807
           +   +V    G+  + S   +G+     
Sbjct: 602 ITSQLVGMMGGQINVESQVGQGSTFTFT 629


>gi|219849075|ref|YP_002463508.1| histidine kinase [Chloroflexus aggregans DSM 9485]
 gi|219543334|gb|ACL25072.1| histidine kinase [Chloroflexus aggregans DSM 9485]
          Length = 482

 Score =  280 bits (716), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 74/230 (32%), Positives = 132/230 (57%), Gaps = 5/230 (2%)

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF---GPLGNPRYIEYANYIDRSGNLVLD 639
             KS+F+A +SHE+RTPL  IIGFS  +            + + ++    I RSG  +L 
Sbjct: 243 RSKSNFMATMSHELRTPLNIIIGFSTAMIEHPEMYGDVKIDEQVLQDIAEIRRSGQHLLG 302

Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA 699
           ++ND+LD++KIE+GK+ L+   ++L   + E I   Q    ++ I +R  + +++P +LA
Sbjct: 303 LINDILDLAKIEAGKLELNRTNLALPPLLDETIRTAQALIGDRPIQLRREYHDSLPTVLA 362

Query: 700 DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKP 759
           D   ++Q+ LN++SNA  FT  G +I +     ++ +V+L VRDTG+G+   + E+  + 
Sbjct: 363 DEVRIRQVLLNLVSNACKFTHMG-EIAVGARAETD-QVVLWVRDTGIGIAPADQERIFQQ 420

Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           F Q+ N+      GTGLGL + + +++ + G+ ++ S   KG++     P
Sbjct: 421 FEQVENADTRHHAGTGLGLSICRWLIELHGGRMWLESEVGKGSIFFFSLP 470


>gi|240278708|gb|EER42214.1| sensor histidine kinase/response regulator [Ajellomyces capsulatus
            H143]
          Length = 2390

 Score =  280 bits (716), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 91/430 (21%), Positives = 170/430 (39%), Gaps = 41/430 (9%)

Query: 410  SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL-CSILE-----ATSD 463
             L       E  +    +        + +  +I    +      L  ++L+       S+
Sbjct: 1707 WLVAAASDHENGDVAFADGLAFSEVEDKMAQQITHYTLRTREPVLVHNVLDDERFSNVSE 1766

Query: 464  GIAIINREGI------ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
              A  N +G       I+  N     L G            V  + N+ +  N  +  ++
Sbjct: 1767 AYASRNPQGKSVIALPIIQAN----NLLGV---------IHVEGKPNSFTQRNLVVLRLV 1813

Query: 518  SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW-KQEKNKLSHAKK 576
               +  +L    L     +           +           +     K  + +  H  K
Sbjct: 1814 CNQVGISLANAFLYRNASKHS---AANAAMVEAQKRALSLAREAERKSKVAEAEAKHNVK 1870

Query: 577  IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
            + E  +  KS FLA VSH++RTP+  +IG SE++K        +     Y   I    + 
Sbjct: 1871 LKEDAAKAKSIFLANVSHDLRTPMNGVIGLSELLKKTNL----DREQDGYVESIRVCADT 1926

Query: 637  VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696
            +L ++ND+LD SK+E+GKM +   P++L E ++E +  ++    ++ +          P 
Sbjct: 1927 LLTLINDILDFSKLEAGKMKVSTVPLNLRETIAEVVRALRYTHRDRGLQTIEDLDGVDPN 1986

Query: 697  --ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILR--VRDTGVGMTNY 751
              +L D   + QI +N+LSN+  FTP G   +        +  + +   V DTG+G++  
Sbjct: 1987 LLVLGDPVRLHQIFMNLLSNSYKFTPKGSVTVKAKAADEDDGRIRITCKVADTGIGISGE 2046

Query: 752  ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA-NMGKFYIFSTPAKGTLIEIIFPL 810
            +L +  +PF Q  +S      G+GLGL + KA+++    GK ++ S    GT +      
Sbjct: 2047 QLVRLFRPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGKIWLQSEEGVGTTVTFTL-- 2104

Query: 811  YDTSHPHDCI 820
              +  P + +
Sbjct: 2105 VLSKAPKNAV 2114


>gi|307153178|ref|YP_003888562.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC
           7822]
 gi|306983406|gb|ADN15287.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC
           7822]
          Length = 572

 Score =  280 bits (716), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 78/260 (30%), Positives = 123/260 (47%), Gaps = 16/260 (6%)

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
              +L  A   AE+ S  KS+FLA  +HE+RTPL  IIGF  +I +            E+
Sbjct: 289 LYQELEQATHAAEEASRLKSEFLASTTHELRTPLNGIIGFLRLILDGMAD--DPEEQREF 346

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
                 S   +L+++ND+LD++KIE+GKM L+  PV L+E      +     A +K +  
Sbjct: 347 LEEAHNSALHLLNLINDILDLAKIEAGKMVLNLSPVDLNELFEAVNNFTCPQAQQKNLSF 406

Query: 687 RTSFANNIPRI--LADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-------TSNEE- 736
           +    +    I    + + + Q+ LN++ NAI FT  GG I++S             E  
Sbjct: 407 KLKKPHTHTPILLYGNYQRLLQVMLNLVGNAIKFTHEGG-IVVSAEVVKKKIFCHDQEFP 465

Query: 737 --VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
               + V DTG+G++  +  K  + F QI  S      GTGLGL +++ +V A  G+   
Sbjct: 466 AIAKISVADTGIGVSLEQQAKLFEKFVQIDGSHTKAYGGTGLGLAISQKLVQAMGGQIDF 525

Query: 795 FS-TPAKGTLIEIIFPLYDT 813
           +S     G+ +    PL   
Sbjct: 526 YSMGEGLGSTVTFTVPLCQV 545


>gi|332140179|ref|YP_004425917.1| phosphate regulon sensor protein PhoR [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327550201|gb|AEA96919.1| phosphate regulon sensor protein PhoR [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 433

 Score =  280 bits (716), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 73/379 (19%), Positives = 145/379 (38%), Gaps = 30/379 (7%)

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
             GI       R  ++++   V +     EA  D   +++ +  I+  NR      G   
Sbjct: 76  YEGIYYLQRRNRNKRKELGELVKRFREGSEALPDAAVVVDAKACIIWCNRLARLDLGLKW 135

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
                +     L          ++    + + +  +       T   K    RI+     
Sbjct: 136 PQDSGRRIDNLLRHP------EFIQYFHAGNYKYPI--EVPSPTNPNKTFEYRIMPY--- 184

Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                 L   DI+   Q +                + DF+A VSHE+RTPLT I G+ E+
Sbjct: 185 GEEHLLLIARDITRVSQLEE--------------MRKDFVANVSHELRTPLTVINGYLEI 230

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           +         +P   +    +    + + +++ DLL +S+IE+    ++   V++   ++
Sbjct: 231 L---PVDEESDPFMHKAMKEMTSQTHRMQNLIEDLLVLSRIEASSERIYENVVNIPTVLA 287

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
           +     Q    EK   I       +  +      ++    N++ NA+H+TP+GG+I +  
Sbjct: 288 QVEREAQALNKEKNHKINFHIDEEL-YVFGVETELRSACSNLVFNAVHYTPAGGEINVYW 346

Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
               N      V D G G+    L +  + F ++  ++  +  G+GLGL + K ++  + 
Sbjct: 347 RRKPNG-AQFSVVDNGDGIEPNHLNRLTERFYRVDKARSRKTGGSGLGLSIVKHVLSHHN 405

Query: 790 GKFYIFSTPAKGTLIEIIF 808
            +  I ST  +G+    + 
Sbjct: 406 SRLEITSTLGEGSNFSFVL 424


>gi|224540067|ref|ZP_03680606.1| hypothetical protein BACCELL_04980 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518298|gb|EEF87403.1| hypothetical protein BACCELL_04980 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 1039

 Score =  280 bits (716), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 81/389 (20%), Positives = 164/389 (42%), Gaps = 29/389 (7%)

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST--NRAVSKLFGYPVEDILRK 495
            +    ++K+     +L   L+  +      + +   +    NR +        +++   
Sbjct: 516 TELHKAQQKLSATNSKLAMALDVANIVPWKWDLKSKTILCDINRPIE--LSTDEQEVEDS 573

Query: 496 PFTVF-------LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI----I 544
             +V        + +     +     +++     +  E+  + + ++  L  +       
Sbjct: 574 QLSVPDSQYFSKIFKEDRERVKQAYRDLIEGRAEKVKEEYRIVNVQKNNLHKVEWVEAQA 633

Query: 545 IKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
             +             +   I+  K+ + +L+ AK++AE+ +  KS FLA +SHEIRTPL
Sbjct: 634 AVEARDEDGKPLTLVGSSLVITNRKKMEQELTTAKELAEESNRLKSAFLANMSHEIRTPL 693

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
            AI+GFS ++ +            EY + I+ +  L+L +++D+LD+SKIE+G + L++ 
Sbjct: 694 NAIVGFSGILASTEEEEEK----QEYVSIIENNNTLLLQLISDILDLSKIEAGTLELNYS 749

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720
            + L+E + E      L      + +             +   + Q+ +N+++NAI FT 
Sbjct: 750 NIELNELMRELERGFLLRVKTDAVKLEFVEPAGPCMAYTEKNRLSQLMINLVTNAIKFTE 809

Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
            G  I        N E+   V DTG G+   + +     F ++ +      +GTGLGL +
Sbjct: 810 KGS-IRFGYEMREN-ELYFYVADTGCGIPKDKQQNIFGRFVKLNSF----AQGTGLGLSI 863

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            K ++D   G+  + S   KG+      P
Sbjct: 864 CKTLMDHMGGRIGVESEEGKGSTFWFTLP 892


>gi|153208203|ref|ZP_01946613.1| PAS domain S-box/His Kinase A (phosphoacceptor) domain/ATPase,
           histidine kinase-, DNA gyrase B-, and HSP90-like
           domain/response regulator receiver domain/Hpt domain
           protein [Coxiella burnetii 'MSU Goat Q177']
 gi|165923914|ref|ZP_02219746.1| PAS domain S-box/His Kinase A (phosphoacceptor) domain/ATPase,
           histidine kinase-, DNA gyrase B-, and HSP90-like
           domain/response regulator receiver domain/Hpt domain
           protein [Coxiella burnetii RSA 334]
 gi|212217917|ref|YP_002304704.1| two component system histidine kinase [Coxiella burnetii CbuK_Q154]
 gi|120576108|gb|EAX32732.1| PAS domain S-box/His Kinase A (phosphoacceptor) domain/ATPase,
           histidine kinase-, DNA gyrase B-, and HSP90-like
           domain/response regulator receiver domain/Hpt domain
           protein [Coxiella burnetii 'MSU Goat Q177']
 gi|165916639|gb|EDR35243.1| PAS domain S-box/His Kinase A (phosphoacceptor) domain/ATPase,
           histidine kinase-, DNA gyrase B-, and HSP90-like
           domain/response regulator receiver domain/Hpt domain
           protein [Coxiella burnetii RSA 334]
 gi|212012179|gb|ACJ19559.1| two component system histidine kinase [Coxiella burnetii CbuK_Q154]
          Length = 657

 Score =  280 bits (716), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 78/371 (21%), Positives = 159/371 (42%), Gaps = 24/371 (6%)

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED-ILRKPFTVF-LEQNTPSV 508
              L  I+      I   ++  I    N+  ++ FGY  +  I+ K    F   +     
Sbjct: 9   EEALLEIINNVPHYIFWKDKNLIFRGCNKMFAEQFGYKDQSGIIGKTDEDFPWSKELRKK 68

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEW 564
                  ++     + L+        +  + ++ +                    DI++ 
Sbjct: 69  YRQDDLSVIETGKPK-LDYEESQVQADGSIKTVLVSKVPYRNKEGNIVGILGIYTDITKR 127

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           K+ +  L        K +  KS+FLA + H++RTPLT II  +E +    +      +  
Sbjct: 128 KRMEESL-------RKANKVKSEFLANMGHDLRTPLTGIILIAEYL----WKKQTEEKDK 176

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           + +  +  +G  +L  +N++L+I+ +E+G ++   +  SL + + +  ++++    +K++
Sbjct: 177 QLSKNLILAGKQLLHFINEVLEITNVEAGNIDYEKKSFSLKKLIDQVFAMLRPSFQQKQL 236

Query: 685 LIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTH--TSNEEVILR- 740
                +  +IP +L      + +I +N+L N++ FT  G Q+ I T     S  +V++  
Sbjct: 237 AFYNDYDPHIPEVLIGSEIMIFRILMNLLGNSLKFTEEG-QVTIQTKLANRSGNQVLIEL 295

Query: 741 -VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V DTG+G+   E +     F ++  S   +  G+GLGL L K   +A  G+  + S P 
Sbjct: 296 IVSDTGIGIPKEEHKNIFAQFKRLTPSYASKYRGSGLGLFLVKTYAEALQGQVTLESEPG 355

Query: 800 KGTLIEIIFPL 810
           +G+      PL
Sbjct: 356 RGSRFICTIPL 366


>gi|218440688|ref|YP_002379017.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
 gi|218173416|gb|ACK72149.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
          Length = 1964

 Score =  280 bits (716), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 71/261 (27%), Positives = 128/261 (49%), Gaps = 16/261 (6%)

Query: 563  EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
            E +Q +  L    +     S +KS+FLA +SHE+RTPL +++  ++++ +     L  P+
Sbjct: 1231 EIEQARRSLEEKAEQLALTSRYKSEFLANMSHELRTPLNSLLILAKLLADNVENNLT-PK 1289

Query: 623  YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             +EYA  I  SG+ +L ++ND+LD++KIESG M++  E + L E   +     +  A++K
Sbjct: 1290 QVEYAATIHSSGSDLLGLINDILDLAKIESGTMSVEIEQMQLAEVRHQLDRAFRQIAHDK 1349

Query: 683  RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----- 736
             +    +F   +P+ I  D + ++Q+  N+LSNA  FT  G Q+ +              
Sbjct: 1350 GLDFEINFDPRLPKAIYTDSKRLQQVLKNLLSNAFKFTAKG-QVSLEVEPAYQGWSQDHE 1408

Query: 737  --------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                    +   V DTG+G+   +     + F Q   +   +  GTGLGL +++ +    
Sbjct: 1409 ILNQAELVISFSVSDTGIGIAPEKQRLIFEAFQQADGTTSRQYGGTGLGLSISREIARLL 1468

Query: 789  MGKFYIFSTPAKGTLIEIIFP 809
             G+  + S    G+   +  P
Sbjct: 1469 GGEITVISRLGHGSTFTLYLP 1489


>gi|254425827|ref|ZP_05039544.1| PAS fold family [Synechococcus sp. PCC 7335]
 gi|196188250|gb|EDX83215.1| PAS fold family [Synechococcus sp. PCC 7335]
          Length = 708

 Score =  280 bits (716), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 104/746 (13%), Positives = 219/746 (29%), Gaps = 91/746 (12%)

Query: 113 MIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172
           MIG     V           +   L+R+      T     +  +  + +D        + 
Sbjct: 1   MIGSSPRQVEHQ--------LQQQLEREGLITKIT-----DAIHQTLDLDQILHTAVDQV 47

Query: 173 REFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP 232
           R F       +   N              +  + L    +      +        +    
Sbjct: 48  RNFLQTDRVIVFRFNSNWKGVVEAESVSPEWPAILGMNIRDSCFNSEYVGTYRKGRISTI 107

Query: 233 HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL 292
                  V S          V      P++   E  L      H     +  + +    L
Sbjct: 108 SDIHTATVDSCYVELLRNVQVRSNLVVPIVQ--EEYLWGLLIAHHCAGPRQWQPESTQLL 165

Query: 293 QNNSKESFEYLSHRN-----------HPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGN 340
           +  + +    +                  + A     E          P+  F     G 
Sbjct: 166 KQVATQMGIAIQQAELYQTTRRELIERRRIQAALQASEVRFRSLSAFAPVGIFQTDLDGR 225

Query: 341 LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400
             Y N  +  +      + +  +               N         ++ +  +   R 
Sbjct: 226 CIYTNAKWQEIAGMSLEESLGDSWAQ----AIHPDDRENVFAAWNRSIAEESDFSMEFRF 281

Query: 401 -----HTIQWNRENSLAMTFIPFEKANQF-PENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
                  ++W    + AM        +    + +   G+  +  + +  ++K+  +    
Sbjct: 282 LKKSTKEVRWVFSRATAMRSQGVFDKDSLIGKIIGYVGVNEDITERKRAEQKIREQ---- 337

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
            ++++  +D I + +  G I   ++  +KL+G+  E+ L K  +  L++     +   L 
Sbjct: 338 AALIDIATDAIFVRDLAGRITFWSKGATKLYGWQPEEALGKNASQLLKKRDKVTVEEALV 397

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNK 570
             L        +     STK  K + +          +           DI+E KQ +  
Sbjct: 398 TTLKQG---FWQGEFTQSTKANKNILVASRWTLERDDANNPKFILEVNTDITEKKQLEAH 454

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
               +K+              V+H++   LT I+G ++ +       +      E  + +
Sbjct: 455 YYQTQKL-----ESLGQLARGVAHDLSNILTPILGIAQ-LLRLTLNDVDTSTQ-EQLDIL 507

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
           ++S      +V  +L  +K   G ++       +   + E I++ Q    +  I IR   
Sbjct: 508 EQSAKRGAKMVRQILTFAK---GDLDPQTTA-DVIVLLQEVINVAQQGFPD-SIEIRFDI 562

Query: 691 ANNIP------RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS----------- 733
                       +  D   + Q+ +N+  NA      GG + +S                
Sbjct: 563 PTEEDIDRLHREVAIDSTRLHQVFMNLCVNARDAMVEGGVLTVSIDTIDVNEASINKDEV 622

Query: 734 ----------NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
                        +++ V DTGVG+     ++   PF    +      +GTGLGL     
Sbjct: 623 ITGKDIEMLAGHYIVVTVADTGVGIAPEVRDRIFDPFFTTKSPD----KGTGLGLATVLG 678

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFP 809
           +V    G   + S   +GT I++  P
Sbjct: 679 IVRKAGGFLKVSSELGQGTEIKVYLP 704



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 44/460 (9%), Positives = 116/460 (25%), Gaps = 46/460 (10%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQNTWY 144
            +  D  G     + +  +  G    + +G            +         +  ++ + 
Sbjct: 217 IFQTDLDGRCIYTNAKWQEIAGMSLEESLGDSWAQAIHPDDRENVFAAWNRSIAEESDFS 276

Query: 145 GKTTLWPIEGTNLYVPIDLAALP-----IYSRN---REFSGFRGFGIVHVNRVDNDPRAL 196
            +        T     +   A       ++ ++    +  G+   G+             
Sbjct: 277 MEFRFLKKS-TKEVRWVFSRATAMRSQGVFDKDSLIGKIIGY--VGVNEDITERKRAEQK 333

Query: 197 GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL---RMKNKVSSLTEYYAHKDDV 253
            +        L +I      V      I         L   + +  +         K D 
Sbjct: 334 IREQA----ALIDIATDAIFVRDLAGRITFWSKGATKLYGWQPEEALGKNASQLLKKRDK 389

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
           +  E+  + T ++     +    T           +   ++++      L      +   
Sbjct: 390 VTVEEALVTTLKQGFWQGEFTQSTKANKNILVASRWTLERDDANNPKFILEVNTDITEKK 449

Query: 314 YFDE--GENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
             +    +    E++ +            L        LL    +  D      L  L  
Sbjct: 450 QLEAHYYQTQKLESLGQLARGVAHDLSNILTPILGIAQLLRLTLNDVDTSTQEQLDILEQ 509

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
           + K       + +   + D             Q   +  + +  +       FP+++   
Sbjct: 510 SAKRGAKMVRQILTFAKGDLDP----------QTTADVIVLLQEVINVAQQGFPDSIEIR 559

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSIL--------EATSD-GIAIINREGIILSTNRAV- 481
              P + D     R++ I+  +L  +         +A  + G+  ++ +   +  N A  
Sbjct: 560 FDIPTEEDIDRLHREVAIDSTRLHQVFMNLCVNARDAMVEGGVLTVSIDT--IDVNEASI 617

Query: 482 ---SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
                + G  +E +      V +      +       I  
Sbjct: 618 NKDEVITGKDIEMLAGHYIVVTVADTGVGIAPEVRDRIFD 657


>gi|327485718|gb|AEA80124.1| Sensor protein torS [Vibrio cholerae LMA3894-4]
          Length = 984

 Score =  280 bits (716), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 71/239 (29%), Positives = 117/239 (48%), Gaps = 8/239 (3%)

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
           ++ AE+ S  KS FLA +SHEIRTP+  ++G + ++++             Y   I+RSG
Sbjct: 460 RQQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLQDTTLTAT----QQHYVQVINRSG 515

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
             +L I+ND+LD SKIE+G + +H     L   V E   L+Q  A EK I +      ++
Sbjct: 516 RSLLAILNDVLDYSKIEAGHLEIHHTHFDLYRLVRETHELMQSRAREKGITLTYHIDEDV 575

Query: 695 PRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-VILRVRDTGVGMTNYE 752
            +    D   + Q+  N++ N I FT  G ++ I      + + +   V D+G+G+   E
Sbjct: 576 TQYWQGDEIRIGQVLNNLVGNGIKFTEQG-EVRIRVRLAPDGQGIRFAVEDSGIGIAEEE 634

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
                  F Q    +  +  GTGLGL +++ +V A  G+  + S   +G+      PL 
Sbjct: 635 QATLFDAFTQADAGR-RKLGGTGLGLAISRKLVQAMGGELQLDSQLGQGSCFWFTLPLS 692


>gi|284035042|ref|YP_003384972.1| PAS/PAC sensor signal transduction histidine kinase [Spirosoma
            linguale DSM 74]
 gi|283814335|gb|ADB36173.1| PAS/PAC sensor signal transduction histidine kinase [Spirosoma
            linguale DSM 74]
          Length = 1060

 Score =  280 bits (716), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 99/802 (12%), Positives = 230/802 (28%), Gaps = 109/802 (13%)

Query: 76   FDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD 135
             DP  R             +  I+  L + +G  A K++G RL DV   L  + +  +  
Sbjct: 302  EDPDNRP--------PDFRISLINSLLEEILGQSAMKVVGKRLTDVF--LDANASGLLSR 351

Query: 136  LLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA 195
             +        +    P           ++  P               ++         + 
Sbjct: 352  CITGIEGGIVQEFELPFTLGKHAGWYRVSMAPQDDH-----------LILAMTEVTGMKR 400

Query: 196  LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY----AHKD 251
                  ++   L+ +  G    +     + + + P   +     V     +        +
Sbjct: 401  AQLGHHRQAELLNSVLNG---SQNSIIVLEAIRDPTGRIVDFRYVLQNDTHRKRIGRADN 457

Query: 252  DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY----------FGTLQNNSKESFE 301
             +L      L    +  L    +         T+ ++             ++        
Sbjct: 458  QLLGRTMLELFPQFQYLLDHYAEVVITGQPFRTETEFNYGQSTVWCDISAVKREDGVILT 517

Query: 302  YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS------------HGNLFYANPSFL 349
                           +   L     D  P    ++                    N    
Sbjct: 518  IQDKSPQKRAEQQLQDQAQLLKSISDNTPAGLVLWEAVRDNTPERKVIDFRYRMTNLMNT 577

Query: 350  LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
             +T Y +   I    G   L   P+         +                +    +   
Sbjct: 578  YVTGYPAEALI----GRDLLTLFPRFRGTELEMALRETLETGRTQRMVFTYYRETADG-- 631

Query: 410  SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI-- 467
                 FI         +         +  +    +     +   +  +++A   GI +  
Sbjct: 632  WFDAQFIRIGDGRSTDK---VLMTYMDVTEAHQAQLVQRQQADLMKLVIDAQPTGIVLYE 688

Query: 468  ------INRE-GIIL-----STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
                   + + G I+       N    +L G    +++           + + +   L +
Sbjct: 689  PVREETTDGQPGKIIDFTLMLVNEKQRQLTGRSDAELIGHRVKSLFSSESSNELFDELVK 748

Query: 516  ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575
            +     R+        +               +        T  D+++ K ++  L    
Sbjct: 749  VAETGQRKEWLLPYFSNVIRGWF-----QSSLIRHGDQVLFTFLDVTDLKHQQQALELTN 803

Query: 576  KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
                + + +   F    SH+++ PL  I  F +V+    +G + +   ++  N +  S  
Sbjct: 804  HELRRSNENLQKFAYVASHDLQEPLRKIQSFGDVL-TSIYGHVLDLTGLDMINRMQGSAQ 862

Query: 636  LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695
             + +++  LL  S++ +    +   PV L + +++ +  + +   E   +I       +P
Sbjct: 863  RMSELIRHLLTYSRLST--QLVETGPVPLTDLLTQTLDDLAIPIQESNAIIEL---GELP 917

Query: 696  RILADLRSVKQIALNILSNAIHF-----TPS----GGQII----------ISTTHTSNEE 736
             +  D   ++Q+  N+LSNAI +     +P     G Q+                  N  
Sbjct: 918  VVHGDKGQLRQLFQNLLSNAIKYRLPDISPKVQITGQQVKRRDLPATLRLTRIAREKNGN 977

Query: 737  V----ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
                  + + D G+G     L++  + F ++    +   EGTG+GL + + +V+ + G  
Sbjct: 978  APQYYRIDITDNGIGFDEKYLDRIFEVFQRLHG--RGVYEGTGIGLAICQKVVENHQGAL 1035

Query: 793  YIFSTPAKGTLIEIIFPLYDTS 814
               S P +G    +  P+    
Sbjct: 1036 TATSRPGEGATFTVYLPVLQNH 1057



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/508 (8%), Positives = 130/508 (25%), Gaps = 56/508 (11%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGKTTLW 150
                 I++   +  G    +++G  L ++     I+   +   ++ K       +    
Sbjct: 181 DFQFVMINDAGIRLGGYKREELLGRTLWEIYPATKINGLFDDYVNVYKTGQPVEKENYYP 240

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
             +   L+  + +    +         +     +   +     +A   +   +   +   
Sbjct: 241 EYD---LWRDVKI----VRVPKGVMVTYVDITEIRKPKEAIRQQAKLLKRVLEGVPVGIA 293

Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY---------YAHKDDVLKTEKYPL 261
                  E++  +            +  ++   +                +        +
Sbjct: 294 VLDVIRSEEDPDNRPPDFRISLINSLLEEILGQSAMKVVGKRLTDVFLDANASGLLSRCI 353

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
              E   + E E   T+  +    +       ++   +   +                 L
Sbjct: 354 TGIEGGIVQEFELPFTLGKHAGWYRVSMAPQDDHLILAMTEV--TGMKRAQLGHHRQAEL 411

Query: 322 TPETVDKCPIPFFVYS-----HGNLFYA-----NPSFLLLTKYKSVDDIEIAGGLSTLLD 371
               ++       V        G +        N +            +     +  L  
Sbjct: 412 LNSVLNGSQNSIIVLEAIRDPTGRIVDFRYVLQNDTHRKRIGRADNQLLGRT--MLELFP 469

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
             +   ++  + V+               +      ++++       ++ +         
Sbjct: 470 QFQYLLDHYAEVVI----TGQPFRTETEFNY----GQSTVWCDISAVKREDG------VI 515

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR-----------EGIILSTNRA 480
               +    +  +++++ +   L SI + T  G+ +              +     TN  
Sbjct: 516 LTIQDKSPQKRAEQQLQDQAQLLKSISDNTPAGLVLWEAVRDNTPERKVIDFRYRMTNLM 575

Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
            + + GYP E ++ +       +   + +   L E L     Q +       T +    +
Sbjct: 576 NTYVTGYPAEALIGRDLLTLFPRFRGTELEMALRETLETGRTQRMVFTYYRETADGWFDA 635

Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEK 568
             I I     +    +T  D++E  Q +
Sbjct: 636 QFIRIGDGRSTDKVLMTYMDVTEAHQAQ 663



 Score = 65.0 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 34/359 (9%), Positives = 86/359 (23%), Gaps = 44/359 (12%)

Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302
               + H  +     +Y  +         +  F     +              +     Y
Sbjct: 77  FDHLHPHWAETNLEHQYRKVIETGQPARFEFKFDQPGQSLPVWYDISAVRLEENSVVVSY 136

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS----------HGNLFYANPSFLLLT 352
                     A      ++  +  D       V+                  N + + L 
Sbjct: 137 HDIT-QSKADAEASRLSSVLQQAFDVSVNGITVFEAIHDEQGEVVDFQFVMINDAGIRLG 195

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
            YK  + +     L  +  A K++        +               +  +++    + 
Sbjct: 196 GYKREELLGRT--LWEIYPATKING--LFDDYVNVYKTGQ--PVEKENYYPEYDLWRDVK 249

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN--- 469
           +  +P                  +  + R  K  +  +   L  +LE    GIA+++   
Sbjct: 250 IVRVP----------KGVMVTYVDITEIRKPKEAIRQQAKLLKRVLEGVPVGIAVLDVIR 299

Query: 470 ---------REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520
                     +  I   N  + ++ G     ++ K  T        S +       +   
Sbjct: 300 SEEDPDNRPPDFRISLINSLLEEILGQSAMKVVGKRLTDVFLDANASGLLSRCITGIEGG 359

Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579
           + Q  E              + +            L M +++  K+ +       ++  
Sbjct: 360 IVQEFELPFTLGKHAG-WYRVSMAP----QDDHLILAMTEVTGMKRAQLGHHRQAELLN 413


>gi|238920900|ref|YP_002934415.1| hybrid sensory histidine kinase BarA [Edwardsiella ictaluri 93-146]
 gi|238870469|gb|ACR70180.1| signal transduction histidine-protein kinase BarA [Edwardsiella
           ictaluri 93-146]
          Length = 918

 Score =  280 bits (716), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 87/333 (26%), Positives = 152/333 (45%), Gaps = 17/333 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           LF Y +   +  P    +               L   +   +             +++ +
Sbjct: 188 LFSYRLMRDVTGPIRNMVNTVDR-----IRRGQLDSRVEGHMLGELDMLKNGINSMAMSL 242

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 243 TAYHEEMQQNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTP 302

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+  +             I+Y + I+RS N +L I+ND+LD SK+E+GK+ L  
Sbjct: 303 LNGVIGFTRQVMKTPLSAT----QIDYLHTIERSANNLLTIINDVLDFSKLEAGKLVLEH 358

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P  L E + E  +L+   A++K + +  +  N++P  +L D   ++Q+  N+L NAI F
Sbjct: 359 IPFMLRETIDEVATLLAPSAHDKGLELTLNVHNDVPEHVLGDPMRLQQVLTNLLGNAIKF 418

Query: 719 TPSGG---QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T  G    +I + +  +   E+ ++V DTG+G++  +  +  + F Q   S   R  GTG
Sbjct: 419 TEKGNIDIRIELRSQTSQAVELEIQVHDTGIGISERQQSQLFQAFRQADASITRRHGGTG 478

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           LGL + + +++   G     S P KG+      
Sbjct: 479 LGLVITQKLINEMGGDIAFHSQPHKGSTFWFHI 511


>gi|209517280|ref|ZP_03266124.1| PAS sensor protein [Burkholderia sp. H160]
 gi|209502289|gb|EEA02301.1| PAS sensor protein [Burkholderia sp. H160]
          Length = 1790

 Score =  280 bits (716), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 113/730 (15%), Positives = 241/730 (33%), Gaps = 55/730 (7%)

Query: 96   KEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGT 155
               S  L    G+ +      R  ++   +  +             T+  K  L   E  
Sbjct: 1101 LYHSLALAAVHGSASAD----RQAEIKADITANIEAFARWAKSCPITFAHKHLLLRAELD 1156

Query: 156  NLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHS 215
             L     + A+  Y      +G +GF            +AL   L  +      +++   
Sbjct: 1157 RLNG-HAMRAMRFYEHAARSAGEQGF---------VQDQALANELAAQCCLAAGLERAAY 1206

Query: 216  SVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDF 275
            +  +E  + +SQ      +   +++  +++  A     +  E+        + +   +  
Sbjct: 1207 AYLREARECYSQWGAHGKVEQLDRLYPMSKPEAAPISRVTIEERGEQLDLATIVKTAQAI 1266

Query: 276  HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI--PF 333
                + +   K    T   ++      L            +         V + P   P 
Sbjct: 1267 SGEMVLENLMKSLVTTAIEHAGAERGLLILPQGTLQRVEAEAIIQGGRVIV-QLPQQPPI 1325

Query: 334  FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393
             V    +L     S                 G        K + +    P++        
Sbjct: 1326 PVALPDSLLRYVASTHEPVVIDDASAENRFSGDP--YIRQKCARSVLCLPLLKQAGLIGV 1383

Query: 394  IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
            +     L    +  +    +  +  + A                       R +     +
Sbjct: 1384 LYLENNLAPGVFAPKRIALLKLLASQAAIALENARLY--------------RDLAEREAK 1429

Query: 454  LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV--FLEQNTPSVMNH 511
            +  ++++   GI I + EG IL  N A  ++ GY  +D+L    +             N 
Sbjct: 1430 IRRLVDSNIVGILIADLEGRILEANDAFLRMLGYGPDDLLVGRLSWRDLTPPEWIERTNT 1489

Query: 512  YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-CYSLTMHDISEWKQEKNK 570
               ++    + Q  EK      K+   + + I +  L  ++      + D+SE K+ + +
Sbjct: 1490 EWEKLEKTGILQPYEKEYF--RKDGSRVPVLIGVAMLGENATQAIGFVLDLSELKRVEAE 1547

Query: 571  LSHAKKIAEKESS--HKSDFLARVSHEIRTPLTAI-IGFSEVIKNQRFGPLGNPRYIEYA 627
                +      +         A +SHE++ P+ A  +  S  +++    P          
Sbjct: 1548 ARQMQLELAHANRVTAIGQLAASISHEMKQPIAATTVNASTGLRSLGLDPPNVEEARRAF 1607

Query: 628  NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
              I R      +++  +  +      K  +  E + ++EA+ E ++L    AN   + +R
Sbjct: 1608 ERIVRDARRAGEVIKRIHGL----VIKAPMSNEILQINEAIREVMALTSGEANRNGVSVR 1663

Query: 688  TSFANNIPRILADLRSVKQIALNILSNAIHFT----PSGGQIIISTTHTSNEEVILRVRD 743
               A ++P I  D   ++Q+ LN++ NAI           ++ I T       V + VRD
Sbjct: 1664 PRLAEDLPPIKGDRVQIQQVILNLIINAIDAMSAVDDRPRELTIDTAVIEPGVVRVAVRD 1723

Query: 744  TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
            +G G+    +E+  +PF     S      G G+GLP+  ++V+A+ G+ +  + P +G +
Sbjct: 1724 SGPGIAPENIERLFEPFYTTKAS------GMGMGLPICNSIVEAHGGRLWASNDPDRGAI 1777

Query: 804  IEIIFPLYDT 813
             +   P+   
Sbjct: 1778 FQFTLPINPA 1787



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/244 (9%), Positives = 70/244 (28%), Gaps = 20/244 (8%)

Query: 90   DAHGYLKEISEELPKTIGNYAFKMI-GM-RLCDVSDILHIDPNNHIGDLLKRQNTWY-GK 146
            D  G + E ++   + +G     ++ G     D++    I+  N   + L++       +
Sbjct: 1445 DLEGRILEANDAFLRMLGYGPDDLLVGRLSWRDLTPPEWIERTNTEWEKLEKTGILQPYE 1504

Query: 147  TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
               +  +G+   VP+ +    +     +  GF     V          A  +++  + +H
Sbjct: 1505 KEYFRKDGS--RVPVLIGVAMLGENATQAIGF-----VLDLSELKRVEAEARQMQLELAH 1557

Query: 207  LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
             + +           +++    +        +             +  +     ++    
Sbjct: 1558 ANRVTAIGQLAASISHEMKQPIAATTVN--ASTGLRSLGLDPPNVEEARRAFERIVRDAR 1615

Query: 267  SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
             +    +  H +             + N   +  E +      +       G ++ P   
Sbjct: 1616 RAGEVIKRIHGL--------VIKAPMSNEILQINEAIREVMALTSGEANRNGVSVRPRLA 1667

Query: 327  DKCP 330
            +  P
Sbjct: 1668 EDLP 1671


>gi|330829872|ref|YP_004392824.1| response regulator receiver [Aeromonas veronii B565]
 gi|328805008|gb|AEB50207.1| Response regulator receiver [Aeromonas veronii B565]
          Length = 608

 Score =  280 bits (716), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 79/260 (30%), Positives = 136/260 (52%), Gaps = 8/260 (3%)

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           +Q  +KL  A + AE  +  KS FLA +SHEIRTP+  I+G   ++ ++      +PR  
Sbjct: 209 QQLNDKLLRANQAAEAGTRAKSSFLANMSHEIRTPMNGILGMLSLLADRDM----DPRER 264

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           +Y      S N +L ++ND+LD+SK+E GK+ L   P  L + + +  +L+Q   + K I
Sbjct: 265 DYLETARESANHLLGLLNDILDVSKLEEGKIELQLAPHHLPQLLEDIRALMQSNCDAKGI 324

Query: 685 LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTH--TSNEEVILR 740
            +  + A + P  ++ D   V+QI  N++SNAI FT  G   I + +T        + + 
Sbjct: 325 KLTLTVAPDTPEWLMIDPLRVRQILFNLVSNAIKFTHQGEVNIRVDSTLLEQDRHSIRIS 384

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           ++DTG+GM+  +L+   + F Q   S   +  G+GLGL +++ +     G   + S+   
Sbjct: 385 IQDTGIGMSKSQLKNLFQRFAQADVSITRQYGGSGLGLEISRNLARLMGGDISVESSEGH 444

Query: 801 GTLIEIIFPLYDTSHPHDCI 820
           G+    I+P   T+    C+
Sbjct: 445 GSTFTYIWPARATTPSIVCL 464


>gi|163759717|ref|ZP_02166802.1| probable two-component sensor histidine kinase protein [Hoeflea
           phototrophica DFL-43]
 gi|162283314|gb|EDQ33600.1| probable two-component sensor histidine kinase protein [Hoeflea
           phototrophica DFL-43]
          Length = 510

 Score =  280 bits (716), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 96/249 (38%), Positives = 156/249 (62%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I+E +  K+    A++ AE+ +  KS FLA +SHE+RTPL AI+GFSEV+  +  GP+GN
Sbjct: 237 IAELEVAKSVSDEARRRAEESNLAKSRFLASMSHELRTPLNAILGFSEVMSGEVLGPVGN 296

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
             Y EY   I RSG  +L+++N++LD+S+IE+G+ +L+   ++L +   + I L+QL A 
Sbjct: 297 ESYKEYVGDIHRSGQHLLNLINEILDLSRIEAGRYDLNESALALSDIAQDCIGLIQLKAR 356

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
            K I I  +F  ++P + AD +S++Q+ LN+LSNA+ FTPSGG+I +    T+     + 
Sbjct: 357 SKSITINEAFEEDLPMVWADEKSIRQVVLNLLSNAVKFTPSGGEIRVKLGWTAGGGQYIA 416

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           ++D G G+   E+   +  FGQ   + +   +GTGLGLP+ +A++  + G+F + S   +
Sbjct: 417 IKDNGPGIAEEEIPVVLSAFGQGSVAIKSAEQGTGLGLPIVQAILAKHGGEFVLKSKLRE 476

Query: 801 GTLIEIIFP 809
           GT    I P
Sbjct: 477 GTEGIAILP 485


>gi|160934161|ref|ZP_02081548.1| hypothetical protein CLOLEP_03029 [Clostridium leptum DSM 753]
 gi|156866834|gb|EDO60206.1| hypothetical protein CLOLEP_03029 [Clostridium leptum DSM 753]
          Length = 947

 Score =  280 bits (716), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 76/259 (29%), Positives = 132/259 (50%), Gaps = 8/259 (3%)

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
           + + +  I   +    K+    + AE  S  KSDFL+R+SHEIRTP+ AI+G +++    
Sbjct: 540 FLVALLLIFRSRLHSAKMKLELEKAEAGSRAKSDFLSRMSHEIRTPMNAIVGLADL---T 596

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
              P    +       I  S   +L ++ND+LD+S+IESGKM L   P SL+  + +  S
Sbjct: 597 EMIPSLPEKAQINLTKIKTSSRYLLSLINDILDMSRIESGKMELEQNPFSLNVLLCDIES 656

Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-- 731
           ++   A  + +  R          + D   ++Q+ LN+LSNA  FTPSGG + +  T   
Sbjct: 657 MLTAEAERRELTFRVEKNLQHDVFIGDTVRLRQVILNLLSNAFKFTPSGGTVWLRVTEPS 716

Query: 732 --TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
              +   V+++V DTG+G++    ++  + F Q+  +   + +GTGLGL +++ ++    
Sbjct: 717 FTETTGNVLVQVIDTGIGISEENQKRIFRSFEQVGPNAT-KCQGTGLGLAISRNIIKLMG 775

Query: 790 GKFYIFSTPAKGTLIEIIF 808
           G+  + S   KG+      
Sbjct: 776 GEILVKSELGKGSEFSFSI 794


>gi|116748069|ref|YP_844756.1| PAS/PAC sensor signal transduction histidine kinase
           [Syntrophobacter fumaroxidans MPOB]
 gi|116697133|gb|ABK16321.1| PAS/PAC sensor signal transduction histidine kinase
           [Syntrophobacter fumaroxidans MPOB]
          Length = 753

 Score =  280 bits (716), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 95/381 (24%), Positives = 173/381 (45%), Gaps = 30/381 (7%)

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
           D R    ++E    +  S++E+  D I  ++  G+I + N+ ++++FG   E++  +   
Sbjct: 373 DIRRYTGELERSEAKYRSLIESAEDMIFTLDSAGVIKTANQHMARVFGVSGEELAGQSLF 432

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL--PFSSCYSL 556
            FL +   +     + + LS D  Q  E       +E    +++ I  +           
Sbjct: 433 RFLPREQATEQLDIVRKALSSDKAQRAESGFNLHDRE-LWFNIQYIPVREAGREHEHVLG 491

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
              DI++ K  + +L +++K+A   +       A V+HEI  P+  ++GF +++  +   
Sbjct: 492 IARDITDRKNLERQLINSEKLASLGT-----LAAGVAHEINNPIGIMLGFCDLMLERM-- 544

Query: 617 PLGNPRYIEY--ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
              +P  +EY     I+R G     IV  LL  +++     +       L+E + E +S+
Sbjct: 545 ---DPGTMEYNDLKTIERHGLHCKSIVERLLSFARMSEEAED----RCDLNENIQEVVSV 597

Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI-IISTTHTS 733
           V+   +  RI + T+ A+++P +  D R ++Q+ LN++ NAIH     G + IIS T   
Sbjct: 598 VKHTLDINRIRLETALASDLPPVNIDSRGLQQVLLNLVGNAIHAMDGDGVLRIISRTGRR 657

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
            E+V L V DTG G+    + K   PF          GEGTGLGL ++  +V    G   
Sbjct: 658 EEDVELIVADTGCGIRKELIAKIFDPFFTTKK----VGEGTGLGLSVSYGIVSKYGGTVE 713

Query: 794 IFST-----PAK-GTLIEIIF 808
             S      P + GT+  +  
Sbjct: 714 CASHAEEDGPGETGTVFTVTL 734


>gi|332530115|ref|ZP_08406065.1| signal transduction histidine kinase-like protein [Hylemonella
           gracilis ATCC 19624]
 gi|332040588|gb|EGI76964.1| signal transduction histidine kinase-like protein [Hylemonella
           gracilis ATCC 19624]
          Length = 814

 Score =  280 bits (716), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 85/347 (24%), Positives = 155/347 (44%), Gaps = 24/347 (6%)

Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530
           +G + + N    ++    V+ +                    +  I     R+  ++   
Sbjct: 193 DGKLQAGNPRFEQITNQMVQAV----------PEEFRPTFEAMQRISGDLHRELDQRELA 242

Query: 531 GSTKEEKLLSLRIIIKKLPFSSCYSL------TMHDISEWKQEKNKLSHAKKIAEKESSH 584
            ++  + L  L     + P +    L       +  + E + ++  L  AK+ AE  +  
Sbjct: 243 LTSLRQALARLLPDAPQDPATQGMDLGALADLVLQVVREREADRVTLQEAKQAAEAANRA 302

Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
           KS+FLA +SHEIRTP+  I+G +        G    P+   Y   + RS + +L ++ND+
Sbjct: 303 KSEFLAVMSHEIRTPMNGIVGMT----GLALGTTLTPQQRGYLTMVRRSADALLGVINDV 358

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI-PRILADLRS 703
           LD SKIE+G++ L   P  L   V   ++ +   A EK + +    A +   R++ D   
Sbjct: 359 LDFSKIEAGRLTLDPRPFRLHALVRSTLASLDNQAREKGLRLAYEPAEDFSHRLIGDPGR 418

Query: 704 VKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVI--LRVRDTGVGMTNYELEKAMKPF 760
           ++QI +N++ NAI F+ +G   + + T    + +V+    V+D G+G+T  + +   +PF
Sbjct: 419 LRQILVNLVGNAIKFSETGAITVRVRTEALRDGQVVLRFEVQDQGIGITPSQQQAIFQPF 478

Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
            Q   S      GTGLGL +   +V A  G+  + S P +G+     
Sbjct: 479 TQADASITRHYGGTGLGLAICGKLVQAMEGEIGVRSAPGQGSTFHFT 525


>gi|293380946|ref|ZP_06626979.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Lactobacillus crispatus 214-1]
 gi|290922477|gb|EFD99446.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Lactobacillus crispatus 214-1]
          Length = 552

 Score =  280 bits (716), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 80/366 (21%), Positives = 158/366 (43%), Gaps = 40/366 (10%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            ++     +L ++ +A  +G+ +I+ +  IL +N AV  L G    D L       +++N
Sbjct: 215 EQLHHREKELKTVTDAMQEGLILIDLDDWILLSNPAVVSLLGLHDTDPLPDDVKEIIDKN 274

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISE 563
           +       +                    +  + + +              S+ + D++E
Sbjct: 275 SRLAHTEGI------------------VERNGRNIQISASPIISRKILKGTSILVVDVTE 316

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
              E+                +  F A VSHE++TPL +I+G +E+++N     + +   
Sbjct: 317 EYHEEQV--------------RRKFTANVSHELKTPLQSIMGSAELLENHL---VKDEDR 359

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
             +   I  S   +L +++D++ +S ++  +       ++L   V+EA+  +Q  A    
Sbjct: 360 DGFYKKIHESSAQLLTLIDDIIRLSHLDENQ-RFEEIKLNLKSPVTEALEALQGSAYRHG 418

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
           I + T+ ++    ILA+ R V +IA N++ N+I +    G+  I+       + IL+V D
Sbjct: 419 IKLETNLSDT--MILANFRLVYEIAYNLIDNSIRYNKEKGKTKITVK-EHRGQAILQVAD 475

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TG+G+      +  + F ++  S   +  GTGLGL + K  V    G   + S   KG+ 
Sbjct: 476 TGIGIPQEAQNRIFERFYRVEKSHSRKTGGTGLGLSIVKHAVQQCHGTIRLESELGKGST 535

Query: 804 IEIIFP 809
             +IFP
Sbjct: 536 FTVIFP 541


>gi|188026160|ref|ZP_02961099.2| hypothetical protein PROSTU_03091 [Providencia stuartii ATCC 25827]
 gi|188021856|gb|EDU59896.1| hypothetical protein PROSTU_03091 [Providencia stuartii ATCC 25827]
          Length = 922

 Score =  280 bits (716), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 90/378 (23%), Positives = 166/378 (43%), Gaps = 31/378 (8%)

Query: 446 KMEIEVMQLCSILEATSDGIAII--NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
           ++E        I+ +   GI I+  +  G ILS N      F    ED  ++  T+  ++
Sbjct: 327 RLEEHEQFNHKIVASAPVGIIILRLSDGGNILS-NELAHDYFRLLSEDDKQRILTIIRQK 385

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
           ++                           T     L +  +  +          + DIS 
Sbjct: 386 SSNY---------------------IDVVTSSSTHLQISFVNSRYQNEDVAICVLIDISI 424

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             Q +  L      AE+ +  KS FLA VSHE+RTPL  IIG  E+++        + + 
Sbjct: 425 RVQMEKSLQDVADAAEQANHAKSMFLATVSHELRTPLYGIIGNIELLQRLEL----SDKA 480

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
                 +D S +L+L I++D+LD SKIES ++N+ ++  +  +  +  ++       +K+
Sbjct: 481 NRLVTTMDNSSSLLLQIISDILDFSKIESNQLNIEYKLFNCRDVFAFVLANYLPLVAKKQ 540

Query: 684 ILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           I + +    N+P +L +D   ++Q+  NI++N+I FT SG   +          + + ++
Sbjct: 541 IALYSFIEPNVPDLLLSDAVRLQQVISNIINNSIKFTDSGF--VFFYVWRDENYLKIEIK 598

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D+G+GM    + +   PF Q+ +   +  +GTGLGL + + +++   G   + S    G+
Sbjct: 599 DSGIGMPQAVVLQLFDPFFQVHDQNNLGHKGTGLGLAICEKLINLMDGDIEVNSQIGLGS 658

Query: 803 LIEIIFPLYDTSHPHDCI 820
              I  PLY   +    I
Sbjct: 659 SFIIRIPLYGQKYTEHAI 676


>gi|91784527|ref|YP_559733.1| phosphate sensor signal transduction histidine kinase, PhoR
           [Burkholderia xenovorans LB400]
 gi|91688481|gb|ABE31681.1| phosphate sensor signal transduction histidine kinase, PhoR
           [Burkholderia xenovorans LB400]
          Length = 437

 Score =  280 bits (716), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 77/409 (18%), Positives = 165/409 (40%), Gaps = 35/409 (8%)

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK-----RKMEIEVMQLCSILEATSDGI 465
                +      + P      G     +     +     R++E +  +    ++A+ +G+
Sbjct: 52  RLWRLLDAPVYGEVPSAPGIWGEIYYRLHKLAKRWHAQVRQVEQQHSRFIQAIQASPNGV 111

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
           A+++    I   N      FG   +  LR+  T  + Q        ++  + S    + L
Sbjct: 112 AMLDDHDQIEWCNAISELHFGLDAKRDLRQHITHLVRQP------DFVRYLNSHRYEEML 165

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
               +    +++   L + +      +   +   DI+E ++                + +
Sbjct: 166 ---IMRGMGDKRQNVLSVQVFPY-GENRKLVLSQDITELERT--------------DAMR 207

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
            DF+A VSHE++TPLT + GF E ++     PL       Y   +++  + +  IV+DLL
Sbjct: 208 RDFVANVSHELKTPLTVLSGFLETMRE---LPLSEGERSRYLELMEQQASRMRHIVSDLL 264

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
            ++K+E        + + +   +       Q  +++    I       +  +      + 
Sbjct: 265 VLAKLEGDNKPPSDQMIDMRAVLRHLRDDAQSLSSDHH-KIVFDADEGL-TVTGVETEIL 322

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
               N+++NAI +TP GG I +S  H      +  V D+G+G+   ++ +  + F ++  
Sbjct: 323 SAFGNLVTNAIRYTPDGGAIRVSW-HAQGGHAVFSVTDSGLGIPAADIPRLTERFYRVDR 381

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           S+     GTGLGL + K ++  +  +  + S   +G+   + FP+Y T+
Sbjct: 382 SRSRDTGGTGLGLAIVKHVLQRHDAQLDVKSEEGRGSTFTVRFPVYRTA 430


>gi|323698979|ref|ZP_08110891.1| integral membrane sensor hybrid histidine kinase [Desulfovibrio sp.
           ND132]
 gi|323458911|gb|EGB14776.1| integral membrane sensor hybrid histidine kinase [Desulfovibrio
           desulfuricans ND132]
          Length = 672

 Score =  280 bits (716), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 76/245 (31%), Positives = 129/245 (52%), Gaps = 8/245 (3%)

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
              ++  AK+ AE  ++ KS FLA +SHEIRTP+ AI+G ++++         +     Y
Sbjct: 271 ALEQVRRAKQAAEVANAAKSSFLASMSHEIRTPMNAILGMADILWETEL----SEDQARY 326

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
            +    +G  +L+I++D+LD+SKIE+G + L      L E +     ++Q  A++K + +
Sbjct: 327 VDVFRTAGENLLEILDDILDLSKIEAGHLTLEKTWFPLTEILDRTCGVIQTKASKKGLGL 386

Query: 687 RTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVI--LRVR 742
               A  +P RI  D   ++Q+  N+L NAI FT +G   + +      +E V+    + 
Sbjct: 387 SCVAAPEVPARINGDPTRLRQVLFNLLGNAIKFTDAGSVAMNVDIASRDDEGVVLHFSIT 446

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTGVG++  +L    + F Q  +S   +  GTGLGL ++K +V    G+ +  STP KG+
Sbjct: 447 DTGVGVSGDKLGAIFEAFTQADSSTTRQFGGTGLGLAISKELVQMMGGRIWAESTPGKGS 506

Query: 803 LIEII 807
                
Sbjct: 507 TFHFT 511


>gi|323491597|ref|ZP_08096776.1| phosphate regulon sensor protein [Vibrio brasiliensis LMG 20546]
 gi|323314173|gb|EGA67258.1| phosphate regulon sensor protein [Vibrio brasiliensis LMG 20546]
          Length = 433

 Score =  280 bits (716), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 79/414 (19%), Positives = 165/414 (39%), Gaps = 38/414 (9%)

Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
             RL    W+ +            +         NGI       R  ++++   + +  +
Sbjct: 50  QMRLSAWLWDEKR-------LTPPSGTGNWESLFNGIYRLQQRQRKKRKELTNLIRRFRN 102

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
             E+  D + +   EG I+  N+    L G+   D   +P +  +          ++  +
Sbjct: 103 GAESLPDAVVVFRSEGNIVWCNKLAQHLLGFRWPDDSGQPISNLVRTP------DFIHYL 156

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKK 576
              D  + LE  +  +   ++++ LRI+         + + + DI++ +Q +        
Sbjct: 157 NKQDFSEPLEMRSPLNV--DRMIELRIVPYM---EGEHLMVVRDITQLQQLEG------- 204

Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
                   + +F A VSHE+RTP+T + G+ E+   +    +  P + +    +    + 
Sbjct: 205 -------MRRNFFANVSHELRTPMTVLQGYLEM--TEDPDVVAGPMWNKAHGVMTEQLSR 255

Query: 637 VLDIVNDLLDISKIESGKMNLHFEP-VSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695
           +  +VN LL +SKIE+    L  E  V++   +          + +    +     N++ 
Sbjct: 256 MNTLVNQLLTLSKIEASS-TLELEDIVNVPAMLEVLEKEAASLSGDLEHKLTFEVDNDL- 313

Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755
           R+L D   ++    N++ NA+ +TP+G  I +    T+     L V+D+G G+    L +
Sbjct: 314 RVLGDDDQLRSAISNLVYNAVKYTPAGADIHVRWYKTAQG-AHLEVKDSGDGIEPQHLHR 372

Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             + F ++  ++     G+GLGL + K  +  +     I S    G+      P
Sbjct: 373 LTERFYRVDKARSRDTGGSGLGLAIVKHALSHHDSHLEISSEVGVGSTFAFTLP 426


>gi|319790225|ref|YP_004151858.1| PAS/PAC sensor signal transduction histidine kinase [Thermovibrio
           ammonificans HB-1]
 gi|317114727|gb|ADU97217.1| PAS/PAC sensor signal transduction histidine kinase [Thermovibrio
           ammonificans HB-1]
          Length = 384

 Score =  280 bits (716), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 82/360 (22%), Positives = 146/360 (40%), Gaps = 32/360 (8%)

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
               L   L    +GI I++  G I+ TNR   +L     ED   K F   ++      +
Sbjct: 53  RSKLLARALSLIREGIVIMDPYGRIVFTNRFARELLDIKPED-TGKFFYQAIKNFD---I 108

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN 569
              + E  +   +   EK               + I          L + D++  KQ + 
Sbjct: 109 VSLINEAFNEKYKVWQEKKVKDR---------YVQIIFGSDMDEKVLLLIDLTPIKQYE- 158

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
                        + K DF+A  SHE++TPL A+    E ++ +      NP+   +   
Sbjct: 159 -------------NLKKDFIANASHELKTPLAALKLSLEALEEECG---NNPKASHFVKR 202

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
                  +  ++ D L +S+++S  + +  + V L   V E +  +  +   K++ ++ S
Sbjct: 203 ALERITFMEQLIEDFLTLSRLDSTNLTVKLQEVELLPLVREILKGLSDFIVRKQLKVKLS 262

Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749
                  + AD + +  +  N++ NAI +   GG+I IS      +EV + V DTG G+ 
Sbjct: 263 VPQEA-AVYADEKMLYAVLKNLIDNAIKYNRDGGEIEISFR-EHAKEVEISVCDTGYGIP 320

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
              L    + F ++  S+  +  GTGLGL + K  VD   GK  + +   +GT   +  P
Sbjct: 321 KSHLPFIFERFYRVERSRSRKLGGTGLGLSIVKLAVDKMGGKVEVETREGEGTCFRVYLP 380


>gi|260461500|ref|ZP_05809747.1| histidine kinase [Mesorhizobium opportunistum WSM2075]
 gi|259032570|gb|EEW33834.1| histidine kinase [Mesorhizobium opportunistum WSM2075]
          Length = 779

 Score =  280 bits (716), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 104/482 (21%), Positives = 192/482 (39%), Gaps = 26/482 (5%)

Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
           SF+ L + + +  +      S ++       N+    V    ++        R  T    
Sbjct: 6   SFIRLVRIRYLSGLLAFALASAIIIFALNRVNSFRHEVDALSANLVIFTRDLRNATSFSE 65

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
             +S                +  +   E E +  ++   +  +    L  +  A+ +G  
Sbjct: 66  TTSSAWRAETRDALTTAARGHSERLTGEIETLSAQLAAIRSRLSAGTLNELEAASVNGDL 125

Query: 467 IINREGIILSTN--RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
             +   ++ + N      K   +   +I  +            ++    T +        
Sbjct: 126 FWSPRDMVRNFNLMSVAQKTDEWSSREIRNQNDLFV-----QPMLVRVRTAMDEERHLAD 180

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW-KQEKNKLSHAKKIAEKESS 583
           +    L       L ++  ++               + +  ++   + + +   AE    
Sbjct: 181 VASDRLLLWASGLLFAVLAVVA--------FWIFRPMEQAIRRAFAQSAESLFKAEAADR 232

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
            KS+FLA +SHEIRTP+  ++G +E++           R   + + I +SGN +L I+ND
Sbjct: 233 AKSEFLANMSHEIRTPMNGVLGMAELLAKTELTA----RQKTFTDVIVKSGNALLTIIND 288

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLR 702
           +LD SKI +G++ L   P  L EAV +  +LV     EK + +       +P  ++ D  
Sbjct: 289 ILDFSKINAGQLTLDPAPFRLAEAVEDVATLVSARVAEKNLELIVRVDPRLPTYVVGDAG 348

Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI---LRVRDTGVGMTNYELEKAMKP 759
             +QI  N++ NA+ FT  G  ++I     +   V+   LRV DTG+G+   +L+   + 
Sbjct: 349 RFRQIVTNLVGNAVKFTEKG-HVLIDVGGETVNGVVQLKLRVEDTGIGIPAEKLQNVFEK 407

Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY-DTSHPHD 818
           F Q+  S   R EGTGLGL +A  +VD   GK  + S   +G++     PL   T+   D
Sbjct: 408 FAQVDGSSTRRHEGTGLGLAIAARLVDLMAGKIGVESEIGRGSVFWFAVPLPLHTAQARD 467

Query: 819 CI 820
            I
Sbjct: 468 EI 469


>gi|171059490|ref|YP_001791839.1| PAS/PAC sensor signal transduction histidine kinase [Leptothrix
           cholodnii SP-6]
 gi|170776935|gb|ACB35074.1| PAS/PAC sensor signal transduction histidine kinase [Leptothrix
           cholodnii SP-6]
          Length = 445

 Score =  280 bits (716), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 82/429 (19%), Positives = 163/429 (37%), Gaps = 46/429 (10%)

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT--RINKRKMEIEVMQLCSI 457
           L  ++    +   + ++   +    P      G     ++   +  +R +  E  +L   
Sbjct: 46  LVNLRDALRSQALVNWLRGTQEGGAPRGGQMWGELAYRIERALQQRERALVTERQRLAQF 105

Query: 458 L---EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
           L   E + +G+ +++ +  I   N   +  FG      L +  T  +          YL 
Sbjct: 106 LLAIEVSPNGVLLLDADEQISWCNSVAADHFGLNPVRDLGQRITNLVR---APAFVAYLQ 162

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA 574
                +    +           + L+L + + +        +  +D++E  + +      
Sbjct: 163 AGDYDEAVPVINH--------GRDLTLSV-LVRPYGEGLRLILSNDVTERLRSEG----- 208

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
                     + DF+A VSHEIRTPLT + GF E + N    PL  P        +    
Sbjct: 209 ---------MRRDFVANVSHEIRTPLTVLGGFVETMSN---LPLTEPERKRVLTLMTLQT 256

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
             +  +V DLL ++++E        + VS+    ++  + +   A  K   +    +   
Sbjct: 257 QRMQTLVADLLILAQLEGSPRPAVDQWVSVRGLFAQVETEI--VALSKGRHLLGFKSEGC 314

Query: 695 PRIL----------ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744
           P +L               +     N+ SNA+ +TP GG+I +        + +  VRD 
Sbjct: 315 PDVLAEDGADCLLAGSETELLSAFTNLCSNAVRYTPEGGRIDVRWLRRPGGDGVFEVRDN 374

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G+    L +  + F ++  S+     GTGLGL + K ++  + G+  + S P +G+  
Sbjct: 375 GLGIAREHLPRLTERFYRVDGSRSRETGGTGLGLSIVKHVMQRHGGQLEVESEPGRGSCF 434

Query: 805 EIIFPLYDT 813
            ++FP    
Sbjct: 435 RLVFPAARV 443


>gi|94264445|ref|ZP_01288234.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93455135|gb|EAT05357.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 1009

 Score =  280 bits (716), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 70/251 (27%), Positives = 128/251 (50%), Gaps = 11/251 (4%)

Query: 564 WKQEKNKLSHAKKIA---EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
            K +++    A+++A   +  +  KS+FLA +SHEIRTPL  +IG + ++         N
Sbjct: 336 RKWQEDARLKAEEMARDAQAANLAKSEFLANMSHEIRTPLNGVIGMTGLLLETEL----N 391

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
            +   YA  +  SG  +L ++ND+LD+SKIE+ ++ L      L   + +  + + + A+
Sbjct: 392 SQQRRYAETMLYSGESLLSLINDILDLSKIEARQLELEEIEFDLAGTIDDFAATMAVRAH 451

Query: 681 EKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVI 738
           E+ + +   F+  + P +  D   ++Q+  N++ N+I FT  G   I +S+     E V+
Sbjct: 452 ERGLELICLFSPGLSPLVKGDCGRLRQVLANLVGNSIKFTEKGEVAIKVSSRDKDEENVL 511

Query: 739 --LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
               + DTGVG+   +L    + F Q+  S   +  GTGLGL + + +VD   G+  + S
Sbjct: 512 LSFEISDTGVGIPQEKLTTIFEKFSQVDASTTRKYGGTGLGLAITRQLVDLMGGEITVSS 571

Query: 797 TPAKGTLIEII 807
               G++    
Sbjct: 572 REGSGSVFSFT 582


>gi|310640016|ref|YP_003944774.1| sensor protein [Paenibacillus polymyxa SC2]
 gi|309244966|gb|ADO54533.1| Sensor protein [Paenibacillus polymyxa SC2]
          Length = 481

 Score =  280 bits (716), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 81/258 (31%), Positives = 133/258 (51%), Gaps = 8/258 (3%)

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            ++ K  L    K     S +KSDF+A +SHE+RTPL +II  ++ I N++   L     
Sbjct: 213 LQKAKVILEERAKQLMMASQYKSDFMATMSHELRTPLNSIINLAQ-IINEQGKELDEDEL 271

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            +Y++ I  SG+ +L ++ND+LD+SK+E+G M +  EPVS+ E     +   ++ A +K 
Sbjct: 272 YQYSDLIYASGHDLLQLINDILDLSKVEAGHMEIVSEPVSVREIAQGMMMHFEVTAKDKN 331

Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQI-IISTTH-----TSNEE 736
           +        +IP  I +D + V+QI  N+LSNA  FT  G  +  IST H        + 
Sbjct: 332 LEFNLKVHEHIPDEIRSDSKRVQQILRNLLSNAFKFTHKGRVLLEISTQHLDRKGQEGDW 391

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           V+  V+DTG+G++  +     + F Q   S   +  GTGLGL +++       G   + S
Sbjct: 392 VVFAVKDTGIGISKLQQHVIFEAFQQANGSINRKYGGTGLGLSISRDFSRLLGGFIRLES 451

Query: 797 TPAKGTLIEIIFPLYDTS 814
              KG+   +  P+  + 
Sbjct: 452 EEGKGSTFSLYLPMCPSD 469


>gi|299529745|ref|ZP_07043180.1| Proline sensor PrlS [Comamonas testosteroni S44]
 gi|298722263|gb|EFI63185.1| Proline sensor PrlS [Comamonas testosteroni S44]
          Length = 1079

 Score =  280 bits (716), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 99/596 (16%), Positives = 208/596 (34%), Gaps = 42/596 (7%)

Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291
           P  +    V ++    +H     +     +   ++ +  E      ++            
Sbjct: 153 PARQFSLSVPAVAADSSHTPLTRRVLLSVVQAIQQHASSESPQGVRLDSPIEW------- 205

Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY-----ANP 346
            + ++      +            D     +            +++   +         P
Sbjct: 206 -RRDADLPGAMIGVLPVSLPLDADDAQSGTSGNVY-----AATLFTRDRISASERPSFQP 259

Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
           ++      +    + I  G     D      ++    + L   +    A     ++    
Sbjct: 260 AYDDFWLMRRDSGVLIGEGRLPAADDIGFKASSEGLILRLADKNGDWTAVYLLGYSSFIK 319

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC-SILEATSDGI 465
               L +  +             +        D      + E E+     ++L      +
Sbjct: 320 NHAWLPVGALTTLLLVLAGGLGFRRWYRLHVTDPAQAAAQSEQEMDAFNLTLLGTVPVAL 379

Query: 466 AIINRE-GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
            ++ R  G +  +N   ++  G   +  L                N  L +I+      +
Sbjct: 380 CVLYRSTGKVAFSNELAAQWLGIGADAELH----------NAPGANGLLRQIMGTTKPGS 429

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
           +E I      + + L +R +  +            D+S   + +     AK  A++    
Sbjct: 430 IESI---QGLDGRPLHVRFVPTRYKSQDVVLCVFADVSARAEMERTQEQAKVQAQRAVEA 486

Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
           KS FLA +SHEIRTPL  ++G  E++         +     + ++I  S  ++  +++D+
Sbjct: 487 KSTFLASMSHEIRTPLYGLLGTLEILAMTPL----SDEQRRHIDHIQNSSGILQQLISDI 542

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRS 703
           LD++KIESG++ L        E V  A++       +K ++I      ++P  +  D   
Sbjct: 543 LDVTKIESGQLALEAAAFDPGELVQRAVASCAPAGEQKGLVIYGCVDTSVPACVYGDAGR 602

Query: 704 VKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVI--LRVRDTGVGMTNYELEKAMKPF 760
           ++QI  ++L NAI FT +G  I  +      +E+V   L+V D+G G+   E ++  +PF
Sbjct: 603 IRQILTSLLGNAIKFTNAGHVITRLRAESLQDEKVRLCLQVVDSGPGIGPEERKRLFEPF 662

Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
            +I N       G G+GL L+  +      + ++ S P  G+   +   L   S P
Sbjct: 663 YRI-NGGSHTVGGMGIGLALSARLARLMGSELHVTSEPGLGSSFSVDLVLEKGSPP 717


>gi|120602149|ref|YP_966549.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfovibrio vulgaris DP4]
 gi|120562378|gb|ABM28122.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfovibrio vulgaris DP4]
          Length = 823

 Score =  280 bits (716), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 104/640 (16%), Positives = 199/640 (31%), Gaps = 48/640 (7%)

Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD 251
            P      L +   H         +             P   + ++  +  L+   A   
Sbjct: 58  APEEDIHALARTLHHAGIAAAYTLATTPHTLSSALIDEPWDMVLVRPGLPGLSPTDALHL 117

Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN-SKESFEYLSHRNHPS 310
                     +        E                    L  + ++ + E    R H  
Sbjct: 118 ARAARSDLQCVALLHREETESAMALLKGGMDDVVVADDPILPAHMARLAREAARRREHSR 177

Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
           L              VD   +  F     G+L +AN +F  +  +     +         
Sbjct: 178 LWRDMRHDVQQWRGMVDNTLLGIFRCQPWGDLVHANAAFAHILGHDDPAALVQQLRTE-- 235

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
            +   L  N     +             A LH +         +        +   E + 
Sbjct: 236 -NRSFLDKNRMEHFLSRLSERDCIDDFEADLHKV---DGTLTRVMLHARIIRDDNGEALS 291

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
             G   +    +  +  +     +     ++  D I I + E  I   N+A+ +L G   
Sbjct: 292 IEGTMEDIERRKSFEAVIINAKQEWEKTFDSVPDVIIIFSPELRIRRCNKALGRLLGLHP 351

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK-- 547
            D++ +     L   +       L          T E        +     + +   +  
Sbjct: 352 RDLVGRRCEEVLGSGSSPNDACALLRSQESAGFSTGELHLPFLGGD---FLVTLSPLQTG 408

Query: 548 --LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
                +    +  HDIS  K+ +++L  A+K+              ++H+    L  ++G
Sbjct: 409 QNDEPAGDIVMVAHDISNRKRLESQLRQAQKM-----EAIGTLAGGIAHDFNNILGVMMG 463

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
           ++E+  +Q      +       + +  +G    DI++ +L +S+ E        + +SL 
Sbjct: 464 YTEMSLDQ---ADEDSPMHRRLSEVLEAGKRARDIIHQILTMSRQE----EPSRQMLSLS 516

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP-SGGQ 724
             V E + L++       + IR    +  P +LA+   ++Q+ +N+ +NA H     GG 
Sbjct: 517 SPVRETLRLLRATLPA-NVDIRVDIEDTAP-VLANQSQIQQVVMNLCTNAAHAMRAKGGV 574

Query: 725 IIISTTHTS--------------NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           + ++                        LRVRDTG G+ +   E    PF          
Sbjct: 575 LTVALDAVDLSAEEAQQRSLEGPATFARLRVRDTGHGIPSEIRENIFDPFFTTKKPD--- 631

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            EGTG+GL L   +V  + G     ST   GT  EI+ P+
Sbjct: 632 -EGTGMGLALVHGIVTGHGGHVSFTSTAGFGTEFEILLPV 670



 Score = 43.1 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 33/331 (9%), Positives = 86/331 (25%), Gaps = 22/331 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIG-NYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144
            +     G L   +      +G +    ++     +    L  +   H    L  ++   
Sbjct: 200 IFRCQPWGDLVHANAAFAHILGHDDPAALVQQLRTENRSFLDKNRMEHFLSRLSERDCID 259

Query: 145 GKTTLWP-IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                   ++GT     + L A  I   N E     G   +          A+     ++
Sbjct: 260 DFEADLHKVDGTLTR--VMLHARIIRDDNGEALSIEG--TMEDIERRKSFEAVIINAKQE 315

Query: 204 FSHLHEIKKGH----------SSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253
           +    +                   K    +          R   +V            +
Sbjct: 316 WEKTFDSVPDVIIIFSPELRIRRCNKALGRLLGLHPRDLVGRRCEEVLGSGSSPNDACAL 375

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
           L++++    ++ E  LP             T         +        ++H        
Sbjct: 376 LRSQESAGFSTGELHLPFLG-----GDFLVTLSPLQTGQNDEPAGDIVMVAHDISNRKRL 430

Query: 314 YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
                +    E +         +   N+      +  ++  ++ +D  +   LS +L+A 
Sbjct: 431 ESQLRQAQKMEAIGTLAGGIA-HDFNNILGVMMGYTEMSLDQADEDSPMHRRLSEVLEAG 489

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
           K + +   + + + R +       +    ++
Sbjct: 490 KRARDIIHQILTMSRQEEPSRQMLSLSSPVR 520


>gi|323143008|ref|ZP_08077714.1| PAS domain S-box protein [Succinatimonas hippei YIT 12066]
 gi|322417202|gb|EFY07830.1| PAS domain S-box protein [Succinatimonas hippei YIT 12066]
          Length = 584

 Score =  280 bits (716), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 83/379 (21%), Positives = 172/379 (45%), Gaps = 40/379 (10%)

Query: 440 TRINKRKMEIEV---------MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490
            +I K++++IE           +   I ++ ++G+ ++NR+GIIL+ N+   K+F    +
Sbjct: 214 RKIEKQQLQIESQLEELVSKNEEFLVITKSMTEGLLLLNRQGIILTVNKTARKIFNVSED 273

Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII-IKKLP 549
            I  K        NT +     L +     + +          K+ +   +R   I    
Sbjct: 274 CI-GKSILSIDRTNTYTQEFLLLDKKTKQKIVEIQ--------KDGRDYQIRYNQIIVNN 324

Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
             + ++L + D++E ++ +                + +F A VSHE++TPL +IIG +E+
Sbjct: 325 RIAGFALIVIDVTEKRRAE--------------RQRQEFTANVSHELKTPLQSIIGCAEL 370

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           I+N   G + N     +A  I   G+ ++ ++ D++ +S+++    ++H E VS ++   
Sbjct: 371 IEN---GLVKNGDLEAFAGRIRSQGSRLVRLIEDIILLSRLDELHESMH-ETVSFNQITK 426

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
           E    +   A E  I +     +         R + ++  N+  NA+ +    G + + T
Sbjct: 427 EVFESIAHKAEEHHIELIKEGPD--ITYYGVYRYLYELIYNLCDNAVKYGKDQGYVKVIT 484

Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
              + +++I++V+D G+G+      +  + F ++  S   R  GTGLGL + K +V  + 
Sbjct: 485 E-ETEKKIIIKVKDNGIGIPIEHQARIFERFYRVDKSPPRRMGGTGLGLSIVKRVVLFHK 543

Query: 790 GKFYIFSTPAKGTLIEIIF 808
           GK  + S    G+   + F
Sbjct: 544 GKIKLESKEGVGSTFIVCF 562


>gi|255535261|ref|YP_003095632.1| two-component sensor histidine kinase [Flavobacteriaceae bacterium
           3519-10]
 gi|255341457|gb|ACU07570.1| two-component sensor histidine kinase [Flavobacteriaceae bacterium
           3519-10]
          Length = 576

 Score =  280 bits (716), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 76/365 (20%), Positives = 162/365 (44%), Gaps = 28/365 (7%)

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
             ++ +++    D +  I+    +L  N    K+ G   E  + +        N   ++ 
Sbjct: 228 KKRIETLINNLHDPVIGIDENKKVLFANGEALKISGIKKEHFIGRQIQDVAVTND--LVR 285

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-------CYSLTMHDISE 563
             + E++  ++ +T E + + +  +E      +I  ++  +         + + + +I+ 
Sbjct: 286 DLIKELIQPEVGKTKEPLKIFADGKESYFEKELIDIQVVPTGEKVSQLIGHVILLRNITP 345

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
           +K              +    K++F+  VSHE +TP++++    ++++N   G L     
Sbjct: 346 FK--------------ELDVAKTNFIGTVSHEFKTPISSMKMSIQLLENDHVGTLNTE-Q 390

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            E    I    N +L I  +LL+++++ESG + L  EP    E V  A+   +  A +K+
Sbjct: 391 KELVENIKDDANRLLKITRELLNLTQVESGNIQLSQEPADPKELVRRAVEATKTPAEQKK 450

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
           + +  +   N+ ++LAD      I +N++SNAI ++  GG + +  +    + V   V+D
Sbjct: 451 MTVEATLPENVSQVLADEEKTVWILINLISNAIRYSYEGGTVKVKVS-EEGDHVKFTVKD 509

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
            G G+    L K    + ++P +   + EGTGLGL ++K  ++A  G   + S    G+ 
Sbjct: 510 QGSGIPEQYLAKVFDRYFRVPGT---QKEGTGLGLAISKEFIEAQGGTLRVESVWGSGSS 566

Query: 804 IEIIF 808
                
Sbjct: 567 FHFTL 571


>gi|254512486|ref|ZP_05124553.1| alkaline phosphatase synthesis sensor protein PhoR
           [Rhodobacteraceae bacterium KLH11]
 gi|221536197|gb|EEE39185.1| alkaline phosphatase synthesis sensor protein PhoR
           [Rhodobacteraceae bacterium KLH11]
          Length = 343

 Score =  280 bits (716), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 68/362 (18%), Positives = 146/362 (40%), Gaps = 31/362 (8%)

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
           L  ++ A      +++R   I++ N     L G     I  + F   L       +   +
Sbjct: 6   LSELVAAIPLPALLVDRAERIVAANTEARTLLG---HVIEGRHFATILR---QPQVIDLV 59

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH 573
            + L         +       ++    +      +  +        D++  +Q       
Sbjct: 60  EQCLRSQQPGK-ARHLSNDGAQDTTFEVECRY--MNGTDKVLAVFQDVTHLEQ------- 109

Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
                      + DF+A VSHE+RTPLTA++GF E ++              +   +   
Sbjct: 110 -------AGQMRRDFVANVSHELRTPLTALMGFIETLRGPARD--DTAARDRFLQIMTDE 160

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693
            N +  +V DLL ++++ES +     EP+ L   +   ++ ++  A++  + +     + 
Sbjct: 161 ANRMNRLVGDLLSLNRVESEERVRPKEPLKLTGLIRSTLNTLKPLADDASVRLSLDAPDE 220

Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE------VILRVRDTGVG 747
              ++ D   ++Q+  N++ NAI +  SGG + +  T +  +       V +++ D G G
Sbjct: 221 PVEMVGDSDQLRQVFTNLVENAIKYGGSGGVVDVIVTLSERDTAMRGPAVRIKIVDQGPG 280

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           +    L +  + F +  + +     GTGLGL + K +++ + G+  + S   +G +  +I
Sbjct: 281 IDAKHLPRLTERFYRADSHRSRELGGTGLGLAIVKHILNRHRGRLRVESELGQGAVFTVI 340

Query: 808 FP 809
            P
Sbjct: 341 LP 342


>gi|87123661|ref|ZP_01079511.1| two-component sensor histidine kinase [Synechococcus sp. RS9917]
 gi|86168230|gb|EAQ69487.1| two-component sensor histidine kinase [Synechococcus sp. RS9917]
          Length = 685

 Score =  280 bits (716), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 75/394 (19%), Positives = 168/394 (42%), Gaps = 40/394 (10%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            ++    ++  S++   +DG  +++ EG I+  N    +LF +   ++  +     L   
Sbjct: 285 EELTAAQVKQASLIATMADGAVLLDAEGRIVLANPTARRLFRWEGRNLESQELLDELPHL 344

Query: 505 TPSVMNHYLTEILSL-DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
               ++  L  +L+     + L       ++  +++   +           ++T+ D++ 
Sbjct: 345 LAIELHAPLDALLNGISDSEDLRCSIDDPSRTLRIVLQSVRDASGESLKGIAVTIQDLTR 404

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
                           + ++ +S F++ VSHE+RTPL  I  + E + +     L     
Sbjct: 405 --------------EVELNAAQSRFISNVSHELRTPLFNIKSYVETLHD-MGDQLSEEET 449

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            E+    +   + +  +VND+LD+S++ES +  + FE ++L  A+ + +   +L A++K+
Sbjct: 450 KEFLGVANAETDRLTRLVNDVLDLSRLESNR-PVQFEAMALTPALEQTLRNYKLNADDKQ 508

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-------- 735
           + +R      +P IL +   + Q+  N++ NA+ F+  GG +++      +         
Sbjct: 509 VSLRLDVPIELPEILGNWDLLLQVLDNLVGNALKFSRQGGVLMLRAYTWPDSCWMPAARQ 568

Query: 736 --------------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
                          V + V DTG G++  + ++    F ++ N+      GTGLGL + 
Sbjct: 569 EESAPHCDLISPLPRVRIEVADTGFGISEADQQRIFDRFYRVENAVHTEV-GTGLGLSIV 627

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
           + +V+ +    ++ S P  GT       L  +  
Sbjct: 628 RGIVEKHGSTIHMASEPEVGTTFWFDLALAQSDQ 661


>gi|294498311|ref|YP_003562011.1| two-component sensor histidine kinase/response regulator [Bacillus
           megaterium QM B1551]
 gi|294348248|gb|ADE68577.1| two-component sensor histidine kinase/response regulator [Bacillus
           megaterium QM B1551]
          Length = 917

 Score =  280 bits (716), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 75/261 (28%), Positives = 126/261 (48%), Gaps = 16/261 (6%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E +  K  L       E  S +KS+FLA +SHE+RTPL +I+  SE+++      L    
Sbjct: 483 ELEAAKEDLEEKAHQLELNSQYKSEFLANMSHELRTPLNSILILSEMLEENAAKTLSEDE 542

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             EYA  I  SG  +L ++ND+LD+SK+ESGK+++    +++ E   +        A +K
Sbjct: 543 -EEYARIIHSSGKDLLALINDILDLSKVESGKLDVLLAEMNMSELPDQIERNFSHVAEQK 601

Query: 683 RILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE------ 735
           ++ ++ + A ++P I   D +  +QI  N+LSNA  FT SG  + +S    ++       
Sbjct: 602 KVQLKINKAQDVPNIIHTDEKRFQQIVKNLLSNAFKFTESGS-VTVSIQRVADHRLTTAM 660

Query: 736 -------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                   + + V DTG+G+   + +   + F Q   +   +  GTGLGL +        
Sbjct: 661 RTVDTDCWLEIAVADTGIGIPKEKHQLIFEAFQQADGATVRKYGGTGLGLSICSEFAKLL 720

Query: 789 MGKFYIFSTPAKGTLIEIIFP 809
            G   + S   KG+   +  P
Sbjct: 721 GGWISLSSEVGKGSTFTLYLP 741


>gi|225375400|ref|ZP_03752621.1| hypothetical protein ROSEINA2194_01025 [Roseburia inulinivorans DSM
           16841]
 gi|225212736|gb|EEG95090.1| hypothetical protein ROSEINA2194_01025 [Roseburia inulinivorans DSM
           16841]
          Length = 954

 Score =  280 bits (716), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 83/256 (32%), Positives = 126/256 (49%), Gaps = 10/256 (3%)

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
            +L  A   A + +  KSDFLAR+SHEIRTP+ AI+G +E+ K+    P    +  +Y +
Sbjct: 551 EQLLEAVDQANRANQAKSDFLARMSHEIRTPMNAIVGLTEIAKHYEDDP---KKIEDYLD 607

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            ID S  ++L+I+ND+LD+S IE+ KM +  EP  L E +    ++ +    +K I+   
Sbjct: 608 KIDVSSKVLLNIINDILDMSSIENKKMKIAKEPFDLHEILMSVCTIYEPQCRQKGIVFEV 667

Query: 689 SFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT----HTSNEEVILRVRD 743
                    ++ D   V QI LN++SNA  FT SGG+I I                 V D
Sbjct: 668 QDEEVTHTYLIGDGLRVNQILLNLVSNAYKFTSSGGKITIKVKELYVKEEKAYFNFLVED 727

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TG GM+     +  +PF Q   +   +  G+GLGL +AK  V+   G   + S   +GT 
Sbjct: 728 TGEGMSEEMQTRLFQPFEQESATTAQKHGGSGLGLSIAKNFVELMSGSISVKSKKGEGTT 787

Query: 804 IEIIFP--LYDTSHPH 817
             +  P      + P 
Sbjct: 788 FVVSIPFEFEQAAEPE 803


>gi|311103715|ref|YP_003976568.1| phosphate regulon sensor kinase PhoR [Achromobacter xylosoxidans
           A8]
 gi|310758404|gb|ADP13853.1| phosphate regulon sensor kinase PhoR [Achromobacter xylosoxidans
           A8]
          Length = 435

 Score =  280 bits (716), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 83/450 (18%), Positives = 171/450 (38%), Gaps = 32/450 (7%)

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
            L TL      +    +   ++       + + A    + W       ++          
Sbjct: 3   WLRTLFLVALWAVAALLAQWLIGDPAGWILFSVALAAMLLWRSWRLHLVSHWANHPDTSP 62

Query: 425 PENMPQNGIEPEDVDT--RINKRKMEIEVMQLCSIL---EATSDGIAIINREGIILSTNR 479
           P ++         +    R   R++      +  +L   +A  DG   +N +  I   NR
Sbjct: 63  PASVGPWDDILAPLYRYTRARARELNETQNTMQGMLAAAQALPDGAVTLNEDFQIDWCNR 122

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
              +  G  +           L          ++           +  + LG   +E+L+
Sbjct: 123 MARQHLGLRLPADRGHNLLNLLRAP------EFVEYAHRPSWPDPI-LVRLGQQGQERLM 175

Query: 540 SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
            +++       S+   L   D+++ ++ +                + DF+A VSHE+RTP
Sbjct: 176 MMQLTAY---ASNQRLLITRDVTQIERLETT--------------RRDFVANVSHELRTP 218

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           LT + GF E +++     L   +  +Y + +      +  IV DLL +S +ES   +   
Sbjct: 219 LTVLAGFLETLRDMPADALPAEQREQYIDMMHEQAQRMQAIVEDLLTLSTLESSPGS-DP 277

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719
             V++   + +A   ++  +  + + +      ++  +L     +     N+L+NA+ +T
Sbjct: 278 RAVNMGALLQKARQQIEALSGGRHV-LEWHIDESL-DVLGAETELTSALSNLLTNAVRYT 335

Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
           P GG I +      +      V+DTG+G+    L +  + F ++   +     GTGLGL 
Sbjct: 336 PDGGTITVRWEREEDGGARYSVQDTGIGIPARHLPRLTERFYRVDRGRSRAVGGTGLGLA 395

Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           + K +   +  +  I S P KG++  + FP
Sbjct: 396 ITKHIAMRHDAELLITSEPGKGSVFALRFP 425


>gi|300867045|ref|ZP_07111713.1| putative adenylate/guanylate cyclase [Oscillatoria sp. PCC 6506]
 gi|300334942|emb|CBN56879.1| putative adenylate/guanylate cyclase [Oscillatoria sp. PCC 6506]
          Length = 1122

 Score =  280 bits (716), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 76/273 (27%), Positives = 125/273 (45%), Gaps = 20/273 (7%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           + K+    L    +  +     K++FLA  SHE+RTPL  IIG +E + +   G L    
Sbjct: 410 QLKESFAALEKQNEDLKDLDKLKNEFLANTSHELRTPLNGIIGIAESLIDGATGELPQST 469

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                  I  SG  + ++VND+LD SK+    + L  +P+ L    +  ++L Q  A +K
Sbjct: 470 QAN-LTLIASSGRRLANLVNDILDFSKLRHNNLELRLKPLDLRAVTNVVLTLSQPLAAQK 528

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH----------- 731
            + +  + A + P   AD   ++QI  N++ NAI FTP G  + +S              
Sbjct: 529 DLQLINAIAADFPPAAADEDRLQQILHNLVGNAIKFTPIG-TVTVSAEVVIGSEQLPITD 587

Query: 732 ----TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
               T+N ++ + V DTG+G+   + ++  + F Q   S      GTGLGL + K +V+ 
Sbjct: 588 SQLSTANYQLAITVSDTGIGIPADKFDRIFESFEQAEGSTAREYGGTGLGLAVTKQLVEL 647

Query: 788 NMGKFYIFSTPAKGTLIEIIFP---LYDTSHPH 817
           + GK  + S    G+      P   +   S P 
Sbjct: 648 HGGKINVKSQLGVGSQFTFTLPASTVKAESTPQ 680


>gi|255012859|ref|ZP_05284985.1| two-component hybrid sensor kinase/response regulator [Bacteroides
           sp. 2_1_7]
          Length = 1041

 Score =  280 bits (716), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 86/409 (21%), Positives = 167/409 (40%), Gaps = 30/409 (7%)

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATS------DGI---AIINREGIILSTNRA 480
            +    +  +    ++ +     +L   L+  +      D +    + +      + N  
Sbjct: 513 VDIFMVDVSELAKTQQVLRTVNQKLSMSLDVANVTPWKWDLVQHTILCDVN---KAVNVN 569

Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE--KL 538
            S LF      +    +   + +     +      ++   + +  E+  + +  +    L
Sbjct: 570 FSGLFDENQLTVPDTEYFSKIYKEDREKVRKAYESLILGKVNKIKEEYRIYNPNKGLHGL 629

Query: 539 LSLRI-IIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
             +      +    +        +   IS+ K+ + +L  AK  AE+ +  KS FLA +S
Sbjct: 630 EWVEACAAVEKKDENGKPLTLVGSSLIISDRKEVERELLEAKNKAEESNRLKSAFLANMS 689

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HEIRTPL AI+GFS ++              EYA  I+ +  L+L ++ND+LD+SKIE+G
Sbjct: 690 HEIRTPLNAIVGFSNILAETDVL----EEKQEYAEIIENNNALLLQLINDILDLSKIEAG 745

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713
            +   +  V ++  +S+    +      + + +          +      + Q+ +N+L+
Sbjct: 746 TLEFVYSDVDVNTLLSDLERSMSKRVVNENVRLVFERKEKDCYVSIAKNRLMQVIINLLT 805

Query: 714 NAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
           NAI FT  G  I    +  + + +   V DTG G++  + E     F ++ +      +G
Sbjct: 806 NAIKFTDQGS-ISYGYSCLNKKMLRFYVSDTGRGISVEQQEAIFDRFVKLDSF----AQG 860

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP--HDCI 820
           TGLGL + + +VD   G+  + S   KG+     FP      P   D I
Sbjct: 861 TGLGLSICRMIVDHLGGEMGVESEIGKGSTFWFTFPYKAPEKPVREDVI 909


>gi|150009899|ref|YP_001304642.1| two-component hybrid sensor kinase/response regulator
           [Parabacteroides distasonis ATCC 8503]
 gi|149938323|gb|ABR45020.1| two-component system sensor histidine kinase, with response
           regulator receiver domain [Parabacteroides distasonis
           ATCC 8503]
          Length = 1041

 Score =  280 bits (716), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 86/409 (21%), Positives = 167/409 (40%), Gaps = 30/409 (7%)

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATS------DGI---AIINREGIILSTNRA 480
            +    +  +    ++ +     +L   L+  +      D +    + +      + N  
Sbjct: 513 VDIFMVDVSELAKTQQVLRTVNQKLSMSLDVANVTPWKWDLVQHTILCDVN---KAVNVN 569

Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE--KL 538
            S LF      +    +   + +     +      ++   + +  E+  + +  +    L
Sbjct: 570 FSGLFDENQLTVPDTEYFSKIYKEDREKVRKAYESLILGKVNKIKEEYRIYNPNKGLHGL 629

Query: 539 LSLRI-IIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
             +      +    +        +   IS+ K+ + +L  AK  AE+ +  KS FLA +S
Sbjct: 630 EWVEACAAVEKKDENGKPLTLVGSSLIISDRKEVERELLEAKNKAEESNRLKSAFLANMS 689

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HEIRTPL AI+GFS ++              EYA  I+ +  L+L ++ND+LD+SKIE+G
Sbjct: 690 HEIRTPLNAIVGFSNILAETDVL----EEKQEYAEIIENNNALLLQLINDILDLSKIEAG 745

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713
            +   +  V ++  +S+    +      + + +          +      + Q+ +N+L+
Sbjct: 746 TLEFVYSDVDVNTLLSDLERSMSKRVVNENVRLVFERKEKDCYVSIAKNRLMQVIINLLT 805

Query: 714 NAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
           NAI FT  G  I    +  + + +   V DTG G++  + E     F ++ +      +G
Sbjct: 806 NAIKFTDQGS-ISYGYSCLNKKMLRFYVSDTGRGISVEQQEAIFDRFVKLDSF----AQG 860

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP--HDCI 820
           TGLGL + + +VD   G+  + S   KG+     FP      P   D I
Sbjct: 861 TGLGLSICRMIVDHLGGEMGVESEIGKGSTFWFTFPYKAPEKPVREDVI 909


>gi|303247813|ref|ZP_07334081.1| histidine kinase [Desulfovibrio fructosovorans JJ]
 gi|302490714|gb|EFL50615.1| histidine kinase [Desulfovibrio fructosovorans JJ]
          Length = 479

 Score =  280 bits (716), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 91/483 (18%), Positives = 182/483 (37%), Gaps = 34/483 (7%)

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH-------TIQW 405
              + +  ++   +  L   P  +       + + R  R      +RL          + 
Sbjct: 14  GSAAPEAHKLPQHVLRLSPGPLRTMPFRRLTLDVARDGRESFMTPSRLRSCQAAPDPGRP 73

Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465
           +   +   T                  +  +  + +    + E+   ++ +IL+  +D +
Sbjct: 74  DDGMAHPPTLEDLIGIEHSKLGF-YQELRQKVQELQEAHEESEVRRQEIAAILDGITDIM 132

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE-ILSLDLRQT 524
            +++++  I+S N    +LF  P  +   +       +               S  + + 
Sbjct: 133 MVLSKDLRIISVNHVFHELFNIPRPE--GQHCYRIFREGEHPCPECPAHRSFKSNAVCRC 190

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
           +    +G       +    I       S   +   D++   + ++K   A+K+A      
Sbjct: 191 MGTFKIGGVPRRFEMVASPIHNPDSPESRILIFKRDVTLETEYQSKYYQAEKMATIGM-- 248

Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKN------QRFGPLGNPRYIEYANYIDRSGNLVL 638
                A V+HEI  PLTA+ G +E I+       +R          EY   I        
Sbjct: 249 ---LAAGVAHEINNPLTAVYGLAEGIRRRLPAIQERVSEALYADVAEYTETILMECRRCR 305

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN---EKRILIRTSFANNIP 695
           DIV  +L  S+       L F PV L+E V++ +++++ +     ++ + +  +  + +P
Sbjct: 306 DIVRSMLSFSRP----HTLAFSPVCLNEVVTDTLNILRGHLEACGKQGLRLTVNLFDPLP 361

Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755
            +  D   +KQ+ LNIL N++      G+I I+T   ++  V L V DTG G+    ++K
Sbjct: 362 TVPGDEAQLKQVLLNILVNSMDAIAGEGEITITTHPENDNTVNLSVEDTGCGIPPENMDK 421

Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
              PF          G+G G+GL     +V  + G   + S    GT + +  PL D+  
Sbjct: 422 LFNPFFTTKP----VGKGIGIGLAACYGIVREHHGFIEVASEVGLGTHVTVKLPL-DSGQ 476

Query: 816 PHD 818
           P +
Sbjct: 477 PSE 479


>gi|289677061|ref|ZP_06497951.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase, HAMP region:histidine
           [Pseudomonas syringae pv. syringae FF5]
          Length = 654

 Score =  280 bits (716), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 76/243 (31%), Positives = 140/243 (57%), Gaps = 8/243 (3%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  A+K A + S  KS+FLA +SHEIRTPL  I+GF+ +++     P    R  +Y   
Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSELTP----RQFDYLGT 325

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I++S + +L I+N++LD SKIE+GK+ L   P +L + + + ++++   A+ K++ + + 
Sbjct: 326 IEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSL 385

Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQI---IISTTHTSNEEVILRVRDTG 745
              + P  +  D   ++QI  N++SNAI FT  G  +   ++      + ++ + V+DTG
Sbjct: 386 VYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAMLEDETEEHAQLRISVQDTG 445

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+++ ++    + F Q  NS   +  GTGLGL ++K +++   G+  + STP +G+   
Sbjct: 446 IGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFW 505

Query: 806 IIF 808
           I  
Sbjct: 506 ISL 508


>gi|254423212|ref|ZP_05036930.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Synechococcus sp. PCC 7335]
 gi|196190701|gb|EDX85665.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Synechococcus sp. PCC 7335]
          Length = 852

 Score =  280 bits (716), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 76/299 (25%), Positives = 143/299 (47%), Gaps = 23/299 (7%)

Query: 537 KLLSLRIIIKKLPFSS----CYSLTMHDISE-WKQEK---NKLSHAKKIAEKESSHKSDF 588
           + L++ + I  L  ++      +  +  +S    Q +    +L      A   +  KS+F
Sbjct: 307 RRLAITLTIVGLGSAAILLLGVNRLVRQLSRSRLQIESYSQQLEKTALAANTANKAKSEF 366

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQR-----FGPLGNPRYIEYANYIDRSGNLVLDIVND 643
           LA +SHE+RTPL AI+GF++++++       F    +  Y  Y   I RSG  +L ++ND
Sbjct: 367 LANMSHELRTPLNAILGFTQLMQSDHANTTYFQKERSSDYNNYLGIISRSGGHLLTLIND 426

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLR 702
           +L +SKIE+G++ L      L   +     ++ + A  K I +       +P+ +  D  
Sbjct: 427 VLSMSKIEAGRLTLDPTCFDLRYLLRTLEEMLSMRAEAKAITLSVQVDQAVPQFVKTDEA 486

Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI---LRVRDTGVGMTNYELEKAMKP 759
            ++Q+ +N++ NAI FTP+G  + +S +  +   +      + DTGVG++  +L     P
Sbjct: 487 KLRQVLVNLVGNAIKFTPTGS-VTLSVSCENIPSLYRLNFSIVDTGVGISAEDLSCLFDP 545

Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
           F Q   ++    +GTGLGL +++  V    G+  + S   +G+           + P +
Sbjct: 546 FFQASRTRT-AHQGTGLGLAISQRFVQMMGGEINVESIVDQGSTFSFSI----QAQPAE 599


>gi|220924683|ref|YP_002499985.1| histidine kinase [Methylobacterium nodulans ORS 2060]
 gi|219949290|gb|ACL59682.1| histidine kinase [Methylobacterium nodulans ORS 2060]
          Length = 513

 Score =  280 bits (716), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 104/251 (41%), Positives = 155/251 (61%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E +Q K     A++ AE+ +  KS FLA +SHE+RTPL AI+GFSEV+KN+ FGP  +P 
Sbjct: 240 ELEQAKANSDEARRRAEEANLAKSRFLATMSHELRTPLNAILGFSEVMKNEVFGPHASPS 299

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
           Y EY+  I  SG  +L+++N++LD+S+IE+G+  L+ E V L   V E   ++ L A  K
Sbjct: 300 YQEYSTDIHDSGMHLLNLINEILDLSRIEAGRYELNEEAVQLAYVVEECRHMMALRARAK 359

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
             + R     ++PR+ AD R+V+Q+ LNILSNAI FTP GG+I I    TS+    + ++
Sbjct: 360 NQVFRELVDPSLPRLWADERAVRQVVLNILSNAIKFTPPGGEITIKVGWTSSGGQYVSIK 419

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG G+   E+   M  FG+   + +   +G+GLGLP+ K +VD + G F + S P +GT
Sbjct: 420 DTGPGIPEDEIPTVMSSFGRGSLAIKTAEQGSGLGLPIVKGLVDLHGGGFRLKSKPREGT 479

Query: 803 LIEIIFPLYDT 813
            + + FP    
Sbjct: 480 EVIVTFPAARV 490


>gi|86750506|ref|YP_487002.1| periplasmic sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris HaA2]
 gi|86573534|gb|ABD08091.1| periplasmic sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris HaA2]
          Length = 530

 Score =  280 bits (716), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 104/249 (41%), Positives = 156/249 (62%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I E +Q K     A+  AE  +  KS FLA++SHE+RTPL AI+GFSEV+K++ FG    
Sbjct: 240 IGELEQAKAISDEARHRAEAANVAKSRFLAQMSHELRTPLNAILGFSEVMKSEIFGAHAV 299

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
           P Y EY+  I  SG  +L+++N++LD+S+IE+G+  L+ E +SL   V++   L++L A+
Sbjct: 300 PVYKEYSADIHNSGVHLLNLINEILDLSRIEAGRYELNEEAISLVHVVTDCHHLLKLRAS 359

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
            + I I   F   +PRI  D R+V+Q+ LN+LSN+I FTP GG+I +    T++    L 
Sbjct: 360 SRGITIHEVFEQGMPRIWGDERAVRQVVLNLLSNSIKFTPQGGEIWLKVGWTASGGQYLS 419

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V+DTG G+   E+   +  FGQ  NS +   +G GLGLP+AK++VD + G F + S    
Sbjct: 420 VKDTGSGIPEEEIPVVLASFGQGSNSIKSAEQGAGLGLPIAKSLVDMHGGTFTLKSKLRI 479

Query: 801 GTLIEIIFP 809
           GT + + FP
Sbjct: 480 GTEVIVTFP 488


>gi|311104253|ref|YP_003977106.1| His Kinase A phosphoacceptor domain-containing protein 4
           [Achromobacter xylosoxidans A8]
 gi|310758942|gb|ADP14391.1| His Kinase A phosphoacceptor domain protein 4 [Achromobacter
           xylosoxidans A8]
          Length = 964

 Score =  279 bits (715), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 107/674 (15%), Positives = 213/674 (31%), Gaps = 63/674 (9%)

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            +T L  + G+++     +   P     R F G  G   V       D       L ++ 
Sbjct: 92  RETLLRAVAGSSVRNTDRI---PAQQTPRTF-GQTGQINVIPLTNGADAYEWALILTRRN 147

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
                       V      I       P         +    +A   D  K     L   
Sbjct: 148 RA---------DVAAANARIVYTTLAEPGSTHLALDDTRRSSHALSRDTEKWLYETLAAR 198

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
             +  PE      + +   T       L          L            +  +  +  
Sbjct: 199 HATPNPEDGRAPVVWIRPLTDSHDHLFLY-------TPLDTTGREQTWVGLEVDDIASVI 251

Query: 325 TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
             +               Y + S + L                          +     +
Sbjct: 252 AAEHASDG-----ASYALYDSDSRVALQGGSEPTASNSISARLARDSFGFQGQSWLPHSL 306

Query: 385 MLYRSDRTCIAASARL---HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
            L ++                +  +  ++L          +       ++  +       
Sbjct: 307 ALSKAVGEAGWRLIYYVPTQDVLRHGASALWAVGAVAACLSAVVLLGVRHIRDKLVSPAM 366

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
            ++  +   +     I+E    G++++   +G  + +N A   L                
Sbjct: 367 RHQTALIDSLALNRKIIEVAPIGLSLVRPADGTQVISNEAARHLL--------------- 411

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
                    + +  +  +   +    +       + + +SL          +     + D
Sbjct: 412 ------DAHDSWREDTRAAGDQTGRHE---YQLGDGRTVSLTYAATNYQSENVVICAISD 462

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           IS  K+ +  L +AK+ A++ +  K+ F A +SHEIRTPL  I+G  E++          
Sbjct: 463 ISAQKEVERTLRNAKQAADQANDAKTLFFATISHEIRTPLYGILGTLELLALTPMTT--- 519

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
            +  +Y + + +S + +L  +ND LD+S++E+G  +L     S  E +   ++     A 
Sbjct: 520 -QQQQYLHTMQQSSSTLLRTINDTLDLSRMEAGHEDLILSEFSPTEMLEGVVANYAARAQ 578

Query: 681 EKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQI---IISTTHTSNEE 736
            K + I       +P  +  D   ++QI  N++SN++ FT +G  +     S        
Sbjct: 579 GKGLQIFAIAGTGMPAMVRGDPTRLQQILNNLVSNSVKFTEAGRVVLRATTSAVAAGKAT 638

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           +  +V DTGVG+      +  +P+ +  + Q     GTGLGL +++ +VD   G   + S
Sbjct: 639 LRFQVADTGVGIRAESQTQLFEPYFRAHSGQVQDAAGTGLGLAISRRLVDLMGGSLSLVS 698

Query: 797 TPAKGT--LIEIIF 808
               GT     I  
Sbjct: 699 EVGLGTSITFAITL 712


>gi|124005780|ref|ZP_01690619.1| two-component hybrid sensor and regulator [Microscilla marina ATCC
           23134]
 gi|123988848|gb|EAY28454.1| two-component hybrid sensor and regulator [Microscilla marina ATCC
           23134]
          Length = 662

 Score =  279 bits (715), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 84/328 (25%), Positives = 146/328 (44%), Gaps = 40/328 (12%)

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
           +  +  T+ L        + Y+ +I        ++K  L    + + + L   + +L   
Sbjct: 96  LNNQVPTLLLVIEHHPDAHQYIFQIQQEGKESAIQKELLAV--QNRSIELEKELLQLKNE 153

Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
                      E K+ +                KS+F A +SHE+RTPL  IIG ++++ 
Sbjct: 154 -----------ELKRIEQF--------------KSNFFAEISHELRTPLNGIIGLTDLLL 188

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
                 + NP + +Y   I  SGN ++ IVND+LD+SKIESG+M      ++L E +   
Sbjct: 189 E----VMTNPHHADYLKAIQSSGNHLVTIVNDVLDMSKIESGQMQFEETHINLPEMLQNI 244

Query: 672 ISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQ-III-- 727
           +   +    +K I + T  A ++P  +L D   + QI  N++ NAI FT  G   I I  
Sbjct: 245 VLSFKQKFMQKGIQVNTVLATDVPEEVLGDKVRLTQILYNLVGNAIKFTSEGEVSIEITF 304

Query: 728 -----STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
                S       ++   V+D+G+G+    L++  +P+ Q          GTGLGL + +
Sbjct: 305 VAPVPSADQAEQIQLDFIVKDSGIGIKKERLQQIFEPYQQASKQTTRLYGGTGLGLSIVR 364

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            +++   G   + S   +GT+   + PL
Sbjct: 365 QLIELQGGHISVNSRWGEGTIFNFVLPL 392


>gi|239907556|ref|YP_002954297.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239797422|dbj|BAH76411.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 1011

 Score =  279 bits (715), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 72/250 (28%), Positives = 126/250 (50%), Gaps = 8/250 (3%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E  +  + L  AK+ AE  S  KS FLA  SHEIRTP+  IIG   ++   R     + +
Sbjct: 353 EQSRMNDVLQKAKEAAESGSRAKSAFLANTSHEIRTPMNGIIGMCNLLLGTRL----SDK 408

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
            +E+   +  S N ++ ++ND+LD SKI++GK +L      L   ++  +  + +   +K
Sbjct: 409 QLEFVRTVHYSANTLMAVINDILDFSKIDAGKFSLEIIEFDLRRVLNMTLRPLTIACQQK 468

Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNE--EVI 738
            + +    + ++P  +  D   ++Q+  N++ NAI FT  G   + +     S+    + 
Sbjct: 469 GVELILVVSPHMPVFLRGDPARLQQVINNLVGNAIKFTERGEVAVCVDFLSESDGVAYIR 528

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
             V+DTG+GM+  + E   KPF Q+ +S   R  GTGLGL ++  +++   G+  + S  
Sbjct: 529 FSVKDTGIGMSPQQQEIIFKPFEQVDSSLTRRFGGTGLGLAISSHLIELMGGQLSVESIL 588

Query: 799 AKGTLIEIIF 808
            KG+      
Sbjct: 589 GKGSEFFFEI 598


>gi|226310516|ref|YP_002770410.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC
           100599]
 gi|226093464|dbj|BAH41906.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC
           100599]
          Length = 478

 Score =  279 bits (715), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 74/243 (30%), Positives = 127/243 (52%), Gaps = 4/243 (1%)

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
              KL   ++        ++DFLA VSHE+RTPLTAI GF E +++            +Y
Sbjct: 234 MAQKLEKVEQERHHLEQVRNDFLANVSHELRTPLTAIQGFLEALQDGLV--EEEEARQKY 291

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
              +      V  +V+DL+D+ K+E+ ++NL   PV + + ++         A EK + +
Sbjct: 292 YAVMYTETMQVNRLVDDLMDLMKLENNEVNLVKFPVDVADVMNRVAFSFHQEAEEKGLHM 351

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
                + +PRI AD   + QI  N++ NA+ FT +G +I +  +    E V ++V DTG+
Sbjct: 352 GVEVEDELPRIYADKDRIAQILKNLVKNALKFTSAG-EIRMRASL-DGEYVQIQVIDTGM 409

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+   +L++  + F ++   +    +GTGLGL + K +V+ + GK  + S+P KG+   I
Sbjct: 410 GIAADDLDRIWERFFKVDRGRSKNNKGTGLGLAIVKELVELHDGKCRVESSPGKGSTFTI 469

Query: 807 IFP 809
             P
Sbjct: 470 WLP 472


>gi|159899882|ref|YP_001546129.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159892921|gb|ABX06001.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 733

 Score =  279 bits (715), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 82/663 (12%), Positives = 228/663 (34%), Gaps = 50/663 (7%)

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244
                              F       K   + ++++                  +    
Sbjct: 91  TELPSLLAEIEAYSSQRPLFIERLPELKTLIAEQQQELSTTIDLRRSQGFEAAQAIVLEN 150

Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
           +   H D + +     L      +L ++     +N+ +      F TL            
Sbjct: 151 QGKQHMDSIRQIIDQLLDRENIRAL-DRAAQTKLNVQRAGLALAFATLVATGFVIGTMAL 209

Query: 305 HRNHPSLSAYFDEGENLTPE----TVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDD 359
                              E    T+             G + + N     +T +     
Sbjct: 210 TERDVRRRELAANELRNQREWFAVTLASIGDAVLTTDIDGKISFMNHIATTITGWPEQQA 269

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
           +  +      +  P ++      PV    + R     +     +       +A+      
Sbjct: 270 LGQSIHTVAAIFDP-ITKQELAHPVNTALAQRQI--VTLSNSVVMRQGNGYVAIEDSAAP 326

Query: 420 KANQFPENMPQNGIEPEDVDTRINK---RKMEIEVMQLCSILE----------------A 460
             ++  + +    +  +  +   ++   R +     +L + ++                +
Sbjct: 327 IYDREQQVIGAVMVFRDVSERYRDEFGQRLLRTLHNRLAATIDLAQVLETSTAVPTPSFS 386

Query: 461 TSDGI-AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL 519
            + G+  +++ +   LS+  +  +                       + + +   +I+  
Sbjct: 387 AACGLYLLLDADEEPLSSYSSAHEPL-----------LNWQQHPAFAAALANSQAQIIDQ 435

Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHAK 575
            L +      +   +++    L   I  L     +         ++S+      + ++  
Sbjct: 436 ALPEPYHSAIIIPFRDQH--QLSGAIVFLHDQHRFDQIDVELAEELSQRMVLAIEQAYLY 493

Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE-VIKNQRFGPLGNPRYIEYANYIDRSG 634
           + A+     +  FL+  SHE++ PLT ++G S+  ++      L + R       I+   
Sbjct: 494 RQAQNAVRLRDVFLSIASHELKNPLTTLLGQSQLSLRRLERLNLVDERLQRSLQAIEAQA 553

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
           + +  +V  LLD+S+IE+G++++  + + L + + + ++ + +  +  ++    + ++  
Sbjct: 554 SRMNKMVTALLDVSRIETGQLDIQHDQIDLAQLLQQLVNDLAITIDHHQLSYHCT-SSQP 612

Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELE 754
            +++ D   ++Q+ +N+++NA+ ++P   ++++     +  + I+++RD G+G+    + 
Sbjct: 613 IQVVGDPIRLEQVFVNLINNAMKYSPEQTEVLVRADRNAQ-QAIVQIRDHGIGIPAESIP 671

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
                F +  N+ +    G G+GL + K +VD + G   + S   +G+L  +  PL  T 
Sbjct: 672 NLFTRFYRASNAARSHVAGLGIGLFVVKEIVDLHGGSIEVSSQVGQGSLFTVYLPL-QTG 730

Query: 815 HPH 817
           +P 
Sbjct: 731 NPQ 733



 Score = 54.6 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 26/207 (12%), Positives = 65/207 (31%), Gaps = 11/207 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD----LLKRQN 141
               D  G +  ++       G    + +G  +  V+ I        +       L ++ 
Sbjct: 242 VLTTDIDGKISFMNHIATTITGWPEQQALGQSIHTVAAIFDPITKQELAHPVNTALAQRQ 301

Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR---ALGK 198
                 ++   +G    V I+ +A PIY R ++  G     +               L +
Sbjct: 302 IVTLSNSVVMRQGNGY-VAIEDSAAPIYDREQQVIGA--VMVFRDVSERYRDEFGQRLLR 358

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
            L  + +   ++ +   +        FS       L   ++    +   AH+  +L  ++
Sbjct: 359 TLHNRLAATIDLAQVLETSTAVPTPSFSAACGLYLLLDADEEPLSSYSSAHEP-LLNWQQ 417

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTK 285
           +P   +  ++   Q     +    ++ 
Sbjct: 418 HPAFAAALANSQAQIIDQALPEPYHSA 444


>gi|150015425|ref|YP_001307679.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium beijerinckii NCIMB 8052]
 gi|149901890|gb|ABR32723.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium beijerinckii NCIMB 8052]
          Length = 357

 Score =  279 bits (715), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 66/238 (27%), Positives = 121/238 (50%), Gaps = 6/238 (2%)

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
           +   K        + DF++ VSHEI++PLT+I GF+ ++K    G L   +   YA+ I+
Sbjct: 120 NRMAKELGSLEKLRQDFISDVSHEIQSPLTSISGFATLLKK---GSLDKDQISHYASIIE 176

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
                +  +  +LL +S +ES   NL+ +   +++ +   + +++   + K I +  S  
Sbjct: 177 TESKRLSKLSENLLRLSNLESEDNNLNLKKYEINKQIESVLLMLEPQWSAKNITLDISLE 236

Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751
             I  I  D   + Q+ +N+L+NAI FTP  G I ++  +  +  V  +V DTG+G+++ 
Sbjct: 237 ETI--ICGDEDLLSQVFINLLNNAIKFTPENGNIGVNLYNNEDG-VECKVSDTGIGISSE 293

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +  +  + F +   ++     G GLGL + K ++D + GK  + S   KGT   I  P
Sbjct: 294 DQPRIFERFYKADKARNRSLGGNGLGLSIVKKIIDLHGGKISLTSEIGKGTEFIIWLP 351


>gi|116051986|ref|YP_789171.1| two-component sensor [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115587207|gb|ABJ13222.1| probable two-component sensor [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 1212

 Score =  279 bits (715), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 107/604 (17%), Positives = 227/604 (37%), Gaps = 26/604 (4%)

Query: 225 FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYT 284
              Q  P       ++  L    A    + ++ K   +     S            +   
Sbjct: 336 LHFQVTPRSGGFPEQIGVLARKEADLAIMSRSSKREEMLRFTRSFLSTSYVLVTRADDKG 395

Query: 285 KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY- 343
           + +  G+L                     Y           +D   +  +          
Sbjct: 396 RAESPGSLDGKRIAIPAG-HVGMQQVRERYPQASIVEVGVALDAMNL-VYEGRADAAVVP 453

Query: 344 -ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT 402
                + ++  ++    I     +        +   +A    +L ++  +          
Sbjct: 454 LVTARYYIVRLFRERLAIADLVPIGAATAHFAVRRGDAELQSILDKALLSISPDDLSDIV 513

Query: 403 IQWNRENS----LAMTFIPFEKANQFPENMPQNGIEPEDV-------DTRINKRKMEIEV 451
            +W           + +I                                  ++ +  ++
Sbjct: 514 NRWRSPPGMSGQTWVDYILVITEILAIAAALLLFCLGWVTYQRRQIRARARVEQALSDQL 573

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
             + ++ +     + + +  G +LS NR+  +  G   E+++ +       +N  +    
Sbjct: 574 RFVEALTDCMPPPLYVRDVNGRMLSCNRSYLQSVGLSSEEVMNRTVLELPMENFETAPEF 633

Query: 512 YLTEILSLDLRQTLEKIT-LGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEK 568
           + + ++++   +T+E +  +     E+ +   I   +              DI+E +Q  
Sbjct: 634 HRSYLMAMREGRTIEAVYPVALGGRERWIDHWIQPFRDSSGTIRGVICGWLDITEHRQLI 693

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
           ++L  AK +A++ S  K+ FLA +SHEIRTP+ A+IG  E+   +      +        
Sbjct: 694 DELEEAKNLADEASRAKTTFLATMSHEIRTPMNAVIGILELALKRAETGRVD---RSSIE 750

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
               S   +L+++ D+LDI++IESG+++L  +  +L E V     + +  A +KR+ +  
Sbjct: 751 IAYASAKSLLELIGDILDIARIESGRLSLSPKRANLRELVESVARVFEGLARQKRLSLVL 810

Query: 689 SFANNI-PRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNE--EVILRVRDT 744
              ++I   +L D    KQI  N++SNAI FT  G  +I I          +V L V DT
Sbjct: 811 EIDSSINGDVLLDAMRFKQILSNLVSNAIKFTDEGSIRIRIDGRQVEPSLLQVNLCVEDT 870

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G++  + ++  +PF Q+  + Q   EGTGLGL +++++ +   G+  + S   +GT I
Sbjct: 871 GIGISLGDQQQLFRPFAQVNRNLQ-NTEGTGLGLVISRSLCEMMGGRLVMSSELGQGTRI 929

Query: 805 EIIF 808
           ++  
Sbjct: 930 DVEL 933



 Score = 47.7 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 64/243 (26%), Gaps = 11/243 (4%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D +G +   +    +++G  + +++   + ++               L           +
Sbjct: 591 DVNGRMLSCNRSYLQSVGLSSEEVMNRTVLELPMENFETAPEFHRSYLMAMREGRTIEAV 650

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFR-GFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           +P+        ID    P    +    G   G+  +  +R   D     K L  + S   
Sbjct: 651 YPVALGGRERWIDHWIQPFRDSSGTIRGVICGWLDITEHRQLIDELEEAKNLADEASRAK 710

Query: 209 EIKKGHSSVE--KEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
                  S E       +              +V   +   A+       E    +    
Sbjct: 711 TTFLATMSHEIRTPMNAVIGILELALKRAETGRVDRSSIEIAYASAKSLLELIGDILDIA 770

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
                +       L+   K+     L  +    FE L+ +   SL    D   N     +
Sbjct: 771 RIESGR-------LSLSPKRANLRELVESVARVFEGLARQKRLSLVLEIDSSING-DVLL 822

Query: 327 DKC 329
           D  
Sbjct: 823 DAM 825


>gi|219852596|ref|YP_002467028.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanosphaerula palustris E1-9c]
 gi|219546855|gb|ACL17305.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanosphaerula palustris E1-9c]
          Length = 761

 Score =  279 bits (715), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 79/580 (13%), Positives = 185/580 (31%), Gaps = 80/580 (13%)

Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS---HGNLFYA 344
                   +    E+ +            E +      V   P+  +  S     N+ + 
Sbjct: 194 AGLVTNAITGADEEFKNIAARKHAEEALKEAQAQLAFLVSSTPVVLYRCSASGDFNVTFI 253

Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
           + +  L   Y++ + ++             +  ++                A+A    + 
Sbjct: 254 SDNVQLQLGYEAHEFMD-----DPAFWPDHIHPDDREHVFERLHRLIKDGTATAEYRLLG 308

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM----------------- 447
            +               +   + +   G   +    +  +  +                 
Sbjct: 309 KDG-TYRWTHDEARVGRDANDQPVEFLGYWIDITKRKHAELALIHSNEELNGLNEELNAL 367

Query: 448 -------------------------EIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
                                         +L   L+ +  G    +        N    
Sbjct: 368 NEELTAAQEEMEMNNEELMTTEKMLRESEARLALALDISGMGTLDCD------MVNHTSW 421

Query: 483 K------LFGY--PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
           +      +FGY  P      K F   +      ++     +  +   +            
Sbjct: 422 RSLRHDQIFGYETPPSTWNLKIFFDHVLPEDREMVRKVFCDAFAS--QSNWSFECRIRRA 479

Query: 535 EEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
           + ++  +         ++         + DI+E KQ +       +     +     +  
Sbjct: 480 DGEIRWIEKTGLGQYDNAGRPLRVLGLLLDITERKQFEATQEEYAEKLMASNEELQRYAY 539

Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650
             SH+++ PL +I+ FSE++  +  G L      EY  +I   G  + +++ DLL +S+I
Sbjct: 540 VASHDLQEPLRSIVSFSELLNRRYRGKLDKD-ADEYIRFIVDGGVRMQNLIKDLLQVSRI 598

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710
           E+      F P      V+++I  ++   +E   ++       +P ++AD   ++Q+  N
Sbjct: 599 ETQAQP--FAPTDARTVVADSIRSLETPIHEISAVVTVD---PLPIVMADPSQLEQVFTN 653

Query: 711 ILSNAIHFTPSGGQIIISTTHTS-NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
           ++ NAI +       +I+ +     +     VRD G+G+ +   ++  + F ++      
Sbjct: 654 LIGNAIKYRRPEVPPVITISAERYGDWWEFSVRDNGIGIESEFFDRIFEMFRRLH--TID 711

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             EGTG+GL + K +V+ + G+  + S P +G+      P
Sbjct: 712 EYEGTGIGLAIVKRIVERHGGRIRVESKPGEGSTFFFTLP 751


>gi|91788129|ref|YP_549081.1| multi-sensor signal transduction histidine kinase [Polaromonas sp.
           JS666]
 gi|91697354|gb|ABE44183.1| multi-sensor signal transduction histidine kinase [Polaromonas sp.
           JS666]
          Length = 451

 Score =  279 bits (715), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 77/421 (18%), Positives = 157/421 (37%), Gaps = 29/421 (6%)

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459
           L  ++  +                       +       +     ++ +  + +  + ++
Sbjct: 55  LRWLRAEQGREAPAMVSSQLPRLPGVWEEVVDRTRRLLKNRDQQLQESQARLDEFLAAMQ 114

Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL 519
           A+  G+ +++ +G I   N+  ++ FG+ V+  + +     + +            + S 
Sbjct: 115 ASPSGVVLLDTQGRIEWCNQMATQHFGFDVQRDVMQHIANLVREPAFKAY------LASG 168

Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579
           +    +      ST   + + L + +          L+  DI+  +  +           
Sbjct: 169 NYSHDVVIPGSLSTPA-RPVKLSVHVHSYGKDRKLLLS-RDITAVELAE----------- 215

Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639
              + + DF+A VSHEIRTPLT + GF E +   R  PL  P    Y   + +    +  
Sbjct: 216 ---AMRRDFVANVSHEIRTPLTVLSGFIETL---RTLPLEEPERARYLALMAQQSQRMQT 269

Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAV---SEAISLVQLYANEKRILIRTSFANNIPR 696
           +VNDLL +S++E        + ++    +    +    +      +   +          
Sbjct: 270 LVNDLLTLSRLEGSPFPGANDWITTSALLVQCEQEARALSAVIAPRGHRLEFDAGPAS-E 328

Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKA 756
           I      +     N+++NA+ +TP  G + +S     +      VRDTG G+    L + 
Sbjct: 329 IAGVQTELYSAMSNLVTNAVRYTPETGLVSVSWKLLKDGRGQFEVRDTGPGIEPEHLPRL 388

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
            + F +I  S+     GTGLGL + K +   +  + +I S P  G+   +IFP       
Sbjct: 389 TERFYRIDRSRSRETGGTGLGLAIVKHVAQRHGAELHIDSQPGHGSRFSLIFPAARIRPA 448

Query: 817 H 817
           H
Sbjct: 449 H 449


>gi|255013265|ref|ZP_05285391.1| putative two-component system sensor histidine kinase [Bacteroides
           sp. 2_1_7]
          Length = 622

 Score =  279 bits (715), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 103/514 (20%), Positives = 193/514 (37%), Gaps = 42/514 (8%)

Query: 319 ENLTPETVDKCPIPFFVYSHGNL---FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
           + L    +D+ P+  FV    N     Y N     +T  ++ + IE         +A   
Sbjct: 131 QELINTILDRLPLGVFVKDGDNHFNYLYWNHFMEEITGIETRE-IEGHDDFEVNYNALMT 189

Query: 376 SDNNAIKPVML------YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
           ++      + +       R      +AS     I+  +         P   A        
Sbjct: 190 AEERLETDMNVIKTGLTARFKGKVKSASGDYRDIEVAKYPISLNNGKPLVLALWRDITSE 249

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSIL---EATS---DGIAIINREGIILSTNRAVSK 483
                       + K  + I  ++ CSI    ++T    D +  +N        N     
Sbjct: 250 LATENTLRRTRILTKMALRISDIRTCSIFIDPDSTHNFKDSVVTLN------DWNTMSED 303

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD--LRQTLEKITLGSTKEEKLLSL 541
           +        + +        +     ++  T +   +    +   ++     KE     +
Sbjct: 304 MIEVSWGQFISR-----AHPDDQEHYHNMFTRLCRGEISEARIEARMLFPGKKEYVWREV 358

Query: 542 RIIIKKLPFSSCYSLTM---HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
              + +       S+ +    +I E K ++  L  AK  AE     KS +LA +SHEIRT
Sbjct: 359 FATVYERDEKGRPSVILGCSTNIQERKNQELSLEEAKVKAEAADKMKSKYLADMSHEIRT 418

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
           PL AI GFSE++         +   + Y + I  +  L++ ++ND+LDISKIE+  + + 
Sbjct: 419 PLNAITGFSELMA----FADTDEERMSYYDVIKMNNQLLMQLINDILDISKIEADAIKIT 474

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718
           +E + + E +    +  +L      + +      +      D   + Q+  N+++NAI  
Sbjct: 475 YEQLDVSELMDTIYASAKLRVPG-GVKLVLEKEADHHMFGTDSMRLLQLINNLVNNAIKN 533

Query: 719 TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
           T  G  I +  T   ++++   VRDTG+G+   +L+     F +         EG GLGL
Sbjct: 534 TKEGS-ITMGYTIQPDDQLRFYVRDTGIGIDKEKLKDVFDRFVK----INDYMEGIGLGL 588

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
            + K +V    G  ++ S    G+    I P ++
Sbjct: 589 AICKGLVVKMGGSIHVTSELGVGSEFSFILPSHE 622


>gi|301312439|ref|ZP_07218355.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
 gi|300829622|gb|EFK60276.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
          Length = 1045

 Score =  279 bits (715), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 95/516 (18%), Positives = 190/516 (36%), Gaps = 49/516 (9%)

Query: 317 EGENLTPETVDKCPIPFFVYSHGN--------LFYANPSFLLLTKYKSVDDIEIAGGLST 368
              +   +  +  P+P+               +   N +F      K     +    ++ 
Sbjct: 409 RLLSRYRDLFNNMPLPYIRQRLIREGTQIDVQVLDVNHAFEEKIAPKDFVVNKHGKEIAN 468

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
           L+          +  V                            +  +P  + N      
Sbjct: 469 LIGGSY---PLLLSAVPTVLESGKSFTCEYYFEPT----GLYYTIIIMPTSEENV----- 516

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNR-------- 479
             +    +  D    +  ++    +L   LEA        N  EG I+  ++        
Sbjct: 517 -VDAFFIDITDIHKFQTHLKAMNHKLAMALEAADLLPWRYNLAEGKIIYESKVHPGDNIE 575

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST--KEEK 537
                      ++  K +   +  +  + +     ++ +  +++  ++  L      E++
Sbjct: 576 TAE----VHTHEVSLKEYFSKIHPSFRACVEKAFDDLCNGKIKKVRKEYCLERLIPGEDR 631

Query: 538 LLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
                I +     +S        +   I+E KQ ++ L  A+  AE+ +  KS FLA +S
Sbjct: 632 HEWEEIQVMAEYDASGKPKALIGSTISITERKQLEHDLRMARDKAEESNKLKSAFLANMS 691

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HEIRTPL AI+GFS ++ +            E+A+ I+ + +L+L ++ND+LD+SKIE+G
Sbjct: 692 HEIRTPLNAIVGFSNILASTD----DLEDKKEFADIIENNNSLLLQLINDILDLSKIEAG 747

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713
            +   ++ V ++  + +      L      + I          I  D   + Q+ +N+L+
Sbjct: 748 TLEFTYDYVDINAVLRDLEQSAHLKNKNPDVQISFKDYLEPCVIYTDRNRLSQLMINLLN 807

Query: 714 NAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
           NA+ FT +G  I+       +  +   V DTG G+   + +     F ++        +G
Sbjct: 808 NAMKFTQAGS-ILFGYKLRDDNTLWFYVEDTGCGIPENKRKDIFGRFVKLNTF----AQG 862

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           TGLGL + + +V    G   + S   KG+      P
Sbjct: 863 TGLGLSICEMIVTQMKGTIGVDSVEGKGSRFWFTLP 898


>gi|238788612|ref|ZP_04632404.1| Sensor kinase protein rcsC [Yersinia frederiksenii ATCC 33641]
 gi|238723207|gb|EEQ14855.1| Sensor kinase protein rcsC [Yersinia frederiksenii ATCC 33641]
          Length = 949

 Score =  279 bits (715), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 93/372 (25%), Positives = 158/372 (42%), Gaps = 29/372 (7%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
             ++E        I+ +   GI+I+   +G  + +N                  +   L 
Sbjct: 351 ALRLEEHEQFNRKIVASAPVGISILRISDGTNILSNELA-------------HNYINLLT 397

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
                 +   + E  +  +           T     L +  +  +          + D+S
Sbjct: 398 NEDRERITRIICEQQANFVDVM--------TSNNNNLQISFVHSRYRNEDVAICVLVDVS 449

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
              + +  L      AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R
Sbjct: 450 SRVKMEESLQEMAAAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPQGVDR 508

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                  ++ S  L+L I++D+LD SKIES ++ +     S  E ++   +       +K
Sbjct: 509 ---LVTAMNNSSGLLLKIISDILDFSKIESEQLKIEPSEFSTVEVITHITANYLPLVVKK 565

Query: 683 RILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
           R+ +      ++PR++  D   ++Q+  N+L+NAI FT +G  II+         +  RV
Sbjct: 566 RLGLYCFIEPDVPRLMQGDAVRLQQVISNLLNNAIKFTDTG-CIILQVRVR-GYYLEFRV 623

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
           RDTGVG+   E+ +   PF Q+    Q   +GTGLGL + + +V+   G   + S    G
Sbjct: 624 RDTGVGINAREINQLFDPFFQVGTGVQRHFQGTGLGLAICEKLVNLMDGDVEVVSELGMG 683

Query: 802 TLIEIIFPLYDT 813
           ++  I  PLY  
Sbjct: 684 SIFAIRIPLYQA 695


>gi|325105694|ref|YP_004275348.1| integral membrane sensor signal transduction histidine kinase
           [Pedobacter saltans DSM 12145]
 gi|324974542|gb|ADY53526.1| integral membrane sensor signal transduction histidine kinase
           [Pedobacter saltans DSM 12145]
          Length = 353

 Score =  279 bits (715), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 57/247 (23%), Positives = 126/247 (51%), Gaps = 4/247 (1%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E K+   +        ++E+  + +FL  +SHE++TPL +I G+ EV+++     +    
Sbjct: 94  EVKEWAKEKKIEIDELKREAIFRKEFLTNLSHELKTPLFSIGGYLEVLEDSDLTDV--EE 151

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
              +   I  + + +  ++ DL +ISK+ESG++ L+ +   +   + E + L++L A + 
Sbjct: 152 TQRFLKKISNNVDRLSILIKDLDEISKLESGEIPLNIKKFDITVLIKEVLELMELEAEKH 211

Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
            I +      ++P  ++AD   ++Q+ +N++ N+I +    G   ++     ++++++ V
Sbjct: 212 HIELLFKQKYDVPTFVMADRDKIRQVLVNLIGNSIKYGKENGTTFVTV-FEMHDQILVEV 270

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            D G+G+    L++  + F +   S+     G+GLGL + K +V+A+     + STP  G
Sbjct: 271 TDNGIGIEEKNLKRLFERFFRTDFSRSRNIGGSGLGLAIVKHIVEAHDQAINVRSTPGIG 330

Query: 802 TLIEIIF 808
           +      
Sbjct: 331 STFGFTL 337


>gi|260760720|ref|ZP_05873063.1| histidine kinase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260671152|gb|EEX57973.1| histidine kinase [Brucella abortus bv. 2 str. 86/8/59]
          Length = 574

 Score =  279 bits (715), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 119/581 (20%), Positives = 227/581 (39%), Gaps = 43/581 (7%)

Query: 251 DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ--------NNSKESFEY 302
              + +E   L  ++     E++ F    + +       G  +          S      
Sbjct: 4   ASQVISEGRELFGAQARQRLERDRFAEPVVQEQLTAVVHGDRRVFDVIDVSAESGSVGLG 63

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIE 361
                  ++            ET+D+      ++     L + N +F+ L     V  +E
Sbjct: 64  FDLTEVQAVRDELSRTLKSHAETLDQLSTAVAIFDPEMKLQFFNQAFVKLWGL-DVAWLE 122

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                + + D  +       +P      D    A  A         E    M  +P  + 
Sbjct: 123 TRPSNTLIFDRLRAEGKLPEQPEWRKWKDSLLSAYRAV--------EPEEHMWHLPDTRT 174

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI----LEATSDGIAIINREGIILST 477
            +   N    G      +    K ++E     L  +    L+  ++ +A+   +G +  +
Sbjct: 175 MRVVANPHPQGGVTWFFENMTEKFELEGRYNTLIKVQGETLDHLAEAVAVFGSDGRLRLS 234

Query: 478 NRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL---GST 533
           N + + L+  P E +      ++  +       +    + +S       ++         
Sbjct: 235 NPSFAALWSLPSEMVREGTHISIIAKLCNQRGGDGLWEDFVSTVTGFLDQRDGRMGQVEL 294

Query: 534 KEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
            +  +LS  ++           LT  D+++  + +  L    +  E     K+DF+  VS
Sbjct: 295 SDGAILSFAVVPLP---KGQTMLTFIDVTDTVRVERALKEKNEALELADQIKNDFVQHVS 351

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           +E+R+PLT IIGF+E+++   FG L N R +EY +YI  S +++L IVND+LD++ +++G
Sbjct: 352 YELRSPLTNIIGFTELLQTPAFGSL-NERQLEYLDYISTSSSVLLTIVNDILDLATVDAG 410

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713
            M L    VS+ EA+S A S V     +  I +    A+++    AD   V+Q+  N+LS
Sbjct: 411 IMELEIGDVSVVEAISAAASRVSERLRDHNIGLDVDIADDVDVFKADANRVRQVLFNLLS 470

Query: 714 NAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN-----SQQ 768
           NA+++ P G  I++        +V+  V D G GM +  L+   K F   PN        
Sbjct: 471 NAVNYAPEGSNIVLQVA-RDGADVVFAVHDDGHGMPSEVLDTVFKRFQSYPNGGRRRGAG 529

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +          + K+ V+ + G+  I +   +GT +   FP
Sbjct: 530 LGLA-------IVKSFVELHGGRVEIDTGEERGTTVICRFP 563


>gi|27365916|ref|NP_761444.1| signal transduction histidine kinase [Vibrio vulnificus CMCP6]
 gi|27362065|gb|AAO10971.1| Signal transduction histidine kinase [Vibrio vulnificus CMCP6]
          Length = 574

 Score =  279 bits (715), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 75/243 (30%), Positives = 134/243 (55%), Gaps = 7/243 (2%)

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
            +L+ A++ +E+ +  KS+FLA +SHE+RTPL +++G  +V+K           +I   +
Sbjct: 199 RELALAREESERANRAKSEFLAMMSHELRTPLNSVLGMLDVLKQSDMSAG----HINLLS 254

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
           +++ S  L+L I++D+LD+SKIESG+ +L  + +++++ V+  +S  QL A  K + I  
Sbjct: 255 HMESSAGLLLAIISDILDLSKIESGEFSLSPQWININDTVTFVVSQQQLVAATKGLNIEL 314

Query: 689 SFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747
           S   ++      D   + Q+  N++ NA+ FT  G QI I      N+E+ + V DTG+G
Sbjct: 315 SIELDDKRHYWLDPSRLSQVLFNLIGNAVKFTQQG-QIDIRVNLE-NDELSISVIDTGIG 372

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           +   ++      F Q  +S   +  GTGLGL + K +V+   G   + S   KG+   + 
Sbjct: 373 IEKDKISSLFTAFKQADSSITRKFGGTGLGLAITKHLVELMSGTVRVSSQFGKGSTFVVK 432

Query: 808 FPL 810
            P+
Sbjct: 433 IPV 435


>gi|253995499|ref|YP_003047563.1| PAS/PAC sensor signal transduction histidine kinase [Methylotenera
           mobilis JLW8]
 gi|253982178|gb|ACT47036.1| PAS/PAC sensor signal transduction histidine kinase [Methylotenera
           mobilis JLW8]
          Length = 539

 Score =  279 bits (715), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 83/537 (15%), Positives = 182/537 (33%), Gaps = 26/537 (4%)

Query: 287 QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANP 346
                L ++   S + +  R      +  D        T+       F         A+P
Sbjct: 6   PTVDALIDSMTPSADEVQSRKDFLEFSERDSQLLKELGTLLAPLEGVFADLLSEHLDAHP 65

Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
           +      +   D +               + +     +                     +
Sbjct: 66  AIAA--SHIHPDQLSQLKQKQRGYFKQIFTGDYGPGYIKSRLRVGVTYQQLGLEPRWHLS 123

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV---------MQLCSI 457
             +      +P        +               +   ++ I             L  +
Sbjct: 124 AYSKYLSWVLPEVMRLVDNDAERFLAYSTAITKIAMFDSELSISAYFHADHEMLRLLAQV 183

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
            E+  + + I + +G +L  N++V+K+ GY  + ++ KP    L +  P++     T ++
Sbjct: 184 FESNLEAVIIADVKGNMLHVNKSVAKITGYVPDALIGKPMQGLLAELEPTLYQDLWTTVI 243

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSH 573
                   +       ++       + +  +  S+           DI+ +KQ +  L+ 
Sbjct: 244 GGGQ---WQGEIWLRNQQGGDYLAWMNMNAVKDSAGKVMQVIAEFSDITAFKQTQEALAQ 300

Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
             +     +     F    SH+++ PL  +  +++++  +    L      E+  Y    
Sbjct: 301 RTEELANSNRELEQFAYVASHDLQEPLRMVASYTQLLARRYKDKLDQD-ANEFIGYAVDG 359

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693
              +  ++ DLL +S+I +    +     S+   +  A+S ++L   E   ++       
Sbjct: 360 ATRMQALIIDLLTMSRIGTHGKQMETCETSVG--LERAVSNLRLAIEESGAVVTRD---P 414

Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753
           +PR+ AD+  + Q+  N++ N I F      II         E +  VRD G+G+     
Sbjct: 415 MPRLDADVSQLTQLFQNLIGNGIKFRGDTSPIIHVGAEKKEGEWLFSVRDNGIGIAPDFF 474

Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           E+    F ++    +    GTG+GL + K +V+ + GK +I S   KG +     P+
Sbjct: 475 ERIFIIFQRLHG--KHEYPGTGIGLSVCKKIVERHGGKIWIESEVGKGAVFYFTLPI 529



 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/242 (9%), Positives = 61/242 (25%), Gaps = 6/242 (2%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D  G +  +++ + K  G     +IG  +  +   L       +   +     W G+  L
Sbjct: 195 DVKGNMLHVNKSVAKITGYVPDALIGKPMQGLLAELEPTLYQDLWTTVIGGGQWQGEIWL 254

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND-PRALGKRLDKKFSHLH 208
              +G +    +++ A  +     +    +                AL +R ++  +   
Sbjct: 255 RNQQGGDYLAWMNMNA--VKDSAGKV--MQVIAEFSDITAFKQTQEALAQRTEELANSNR 310

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           E+++       +  +     +    L  +     L +               +       
Sbjct: 311 ELEQFAYVASHDLQEPLRMVASYTQLLARRYKDKLDQDANEFIGYAVDGATRMQALIIDL 370

Query: 269 LPEQEDF-HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
           L       H   +             +N + + E              D   +   +   
Sbjct: 371 LTMSRIGTHGKQMETCETSVGLERAVSNLRLAIEESGAVVTRDPMPRLDADVSQLTQLFQ 430

Query: 328 KC 329
             
Sbjct: 431 NL 432


>gi|237709891|ref|ZP_04540372.1| two-component system histidine kinase [Bacteroides sp. 9_1_42FAA]
 gi|237725439|ref|ZP_04555920.1| two-component system histidine kinase [Bacteroides sp. D4]
 gi|229436126|gb|EEO46203.1| two-component system histidine kinase [Bacteroides dorei 5_1_36/D4]
 gi|229455984|gb|EEO61705.1| two-component system histidine kinase [Bacteroides sp. 9_1_42FAA]
          Length = 494

 Score =  279 bits (715), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 84/322 (26%), Positives = 141/322 (43%), Gaps = 14/322 (4%)

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
           +  + F  +L  +    + + LT  ++     T          +            L   
Sbjct: 177 LTEEEFAAYLHPDDRDTLMNALTNQIA-GNLNTEAFTYRLKQSDGSWEWFEEQSLYLEQI 235

Query: 552 SC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
                        I E K  + KL  A+  AE+    KS FLA +SHEIRTPL AIIGFS
Sbjct: 236 EGAPYRIIGACQSIQEHKNAEEKLMFARDKAEQSDKLKSAFLANMSHEIRTPLNAIIGFS 295

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
            ++ ++           E+ + I+++   +L +++D++D+SKIES  +    +  SL + 
Sbjct: 296 NLLVSEEM---DGEESKEFVSIINQNCEQLLVLISDIIDMSKIESNSIEFKIQKQSLHQI 352

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727
           +SE      L    K I  R         I+ D    KQ+  N+++NAI FT  G  I +
Sbjct: 353 LSEIYQCQSLNIPSK-IEFRLELPEEDTEIMIDTTRFKQVINNLINNAIKFTMYG-HITL 410

Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
            +    N  + + V+DTG+GM   +L    + F ++ + +     G GLGL + K +++ 
Sbjct: 411 GSKILQNGTIDIYVKDTGMGMPQEKLAHIFERFYKMDSFK----PGAGLGLSICKTIIEH 466

Query: 788 NMGKFYIFSTPAKGTLIEIIFP 809
             G+  + S   KG+   I  P
Sbjct: 467 MQGEINVTSIEGKGSNFTITIP 488


>gi|87118375|ref|ZP_01074274.1| serine/threonine kinase with two-component sensor domain [Marinomonas
            sp. MED121]
 gi|86166009|gb|EAQ67275.1| serine/threonine kinase with two-component sensor domain [Marinomonas
            sp. MED121]
          Length = 2128

 Score =  279 bits (715), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 77/241 (31%), Positives = 130/241 (53%), Gaps = 10/241 (4%)

Query: 569  NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
             +L+ AK  AE+ +  KS FLA +SHEIRTP+ A+IG S ++   +     N    +Y N
Sbjct: 1503 KQLTLAKLQAEEANQAKSMFLATMSHEIRTPMNAVIGLSHLVLKTQL----NLEQKDYLN 1558

Query: 629  YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
             I  S  ++L ++N +LD SKIE+ K+ L   P +L++ +  + S+  + A EK + +  
Sbjct: 1559 KILESAEILLGLINSVLDFSKIEAHKLALESIPFNLNDVIENSTSICSIKAKEKGLALNI 1618

Query: 689  SFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRD 743
                 +IP +  D   ++QI +N+ +NA+ FT  G Q+ I      NE+    +   + D
Sbjct: 1619 HCHNADIPLLQGDPLRLQQILINLANNAVKFTRIG-QVDIHIHLEPNEQDLAQLKFEIVD 1677

Query: 744  TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
            TGVGM   +++     F Q  +S   +  GTGLGL ++K +++   G+ ++ S   KG+ 
Sbjct: 1678 TGVGMNKKQIDNLFSSFSQGDDSITRQYGGTGLGLAISKELIELMGGEIWVNSEMGKGST 1737

Query: 804  I 804
             
Sbjct: 1738 F 1738


>gi|268591166|ref|ZP_06125387.1| sensor kinase protein RcsC [Providencia rettgeri DSM 1131]
 gi|291313393|gb|EFE53846.1| sensor kinase protein RcsC [Providencia rettgeri DSM 1131]
          Length = 924

 Score =  279 bits (715), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 92/369 (24%), Positives = 164/369 (44%), Gaps = 31/369 (8%)

Query: 446 KMEIEVMQLCSILEATSDGIAII--NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
           ++E        I+ +   GI I+     G ILS N      F    +D  ++  T+    
Sbjct: 334 RLEEHEQFNHKIVASAPVGIIILRLTDGGNILS-NELAHDYFRLLNDDDKQRILTII--- 389

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                 ++Y+  + +                    L +  +  +          + DIS 
Sbjct: 390 --RQKSSNYIDVVTT----------------NGTHLQISFVNSRYQNEDVAICVLVDISI 431

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             Q +  L      AE+ +  KS FLA VSHE+RTPL  IIG  E+++          + 
Sbjct: 432 RVQMEKSLQDVADAAEQANHAKSMFLATVSHELRTPLYGIIGNIELLQRYEL----PEKA 487

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
               + +D S +L+L I++D+LD SKIES ++ +  +  +  E  +  ++       +K+
Sbjct: 488 TRLVSTMDNSSSLLLQIISDILDFSKIESKQLKIESKLFNCREVFAFVLANYLPLVTKKK 547

Query: 684 ILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           I + +    NIP ++  D   ++Q+  NI++N+I FT SG   ++         + + +R
Sbjct: 548 ISLYSFIEPNIPDLILNDPVRLQQVISNIVNNSIKFTESGF--VLLYVWKDENYLKIEIR 605

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D+G+GMT+  + K   PF Q+ +   +  +GTGLGL + + +V+   G   + S    G+
Sbjct: 606 DSGIGMTHAVVMKLFDPFFQVYDQNNMGHKGTGLGLAICEKLVNLMDGDIEVSSQIGLGS 665

Query: 803 LIEIIFPLY 811
              I  PLY
Sbjct: 666 SFTIRIPLY 674


>gi|83954602|ref|ZP_00963313.1| sensory transduction histidine kinase [Sulfitobacter sp. NAS-14.1]
 gi|83840886|gb|EAP80057.1| sensory transduction histidine kinase [Sulfitobacter sp. NAS-14.1]
          Length = 798

 Score =  279 bits (715), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 96/647 (14%), Positives = 210/647 (32%), Gaps = 54/647 (8%)

Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFS-----------QQSPP 231
           I+      +  R            + ++ +  S +   + D+ +                
Sbjct: 175 IIRPAAASDGTRDHDAAFLGVAFAMVDVDEIFSDLFAAQNDLITLDVSFYDENGTPFQHH 234

Query: 232 PHLRMKNKVSSLTEYYAHKD-DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG 290
           P +       +      H       T  +    + E++ P    +  + L+         
Sbjct: 235 PTVASDAPAPAFEFSRNHTGYGQRMTLHWASTPAFEAAQPNNAKWIVLALSLTITALILM 294

Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFL 349
                 K +          +        E  +   ++   +P   V   G + + N +  
Sbjct: 295 IQSVILKRNLTINQTVADKTRELETQHQEKRS--ILENAMLPIISVRQSGEILHLNDAAR 352

Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
                  +         +       L        + ++R+D       A++         
Sbjct: 353 QH-----LIAAGHRKDATGDFVQDLLP------EIDIHRADGG-----AKVVVPPHKGTT 396

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469
                 +                +  +  D+     K+     +    L +   G+  I+
Sbjct: 397 ESRTLEVEKNTWLTADAETRITLMLRDITDSERRTLKIAETEQRWSLALSSAHIGVFDID 456

Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPFT--VFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
            E      +     +  +P +   + P+   +       + +   +       +    E 
Sbjct: 457 LENGTSVVSDTWRDIMHHPADPACQNPYYGKMQHVHPDDAAVVKKIELACLNGMTDRAEA 516

Query: 528 ITLGSTKEEKLLSL---RIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKES 582
                  ++    +    +++++              DI+E  + +              
Sbjct: 517 RFRIRVGQDNWRWIKSDAVVVERAKNGRALRMLGIQIDITESNKLE-------------- 562

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
             K DF+A VSHE+RTPLT+I G    +   +     +   +        + + ++ +VN
Sbjct: 563 QMKHDFVATVSHELRTPLTSIKGAL-GLLEAQTQDDPDAGAVRLVQIATANCDRLVALVN 621

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702
           D+LD+ KI +G M +  +P  L + V+ A   V+ YA+E ++ I     +    +L D  
Sbjct: 622 DILDMEKINAGSMTVVPKPEKLGDIVTLAAEQVEPYASEWKVEIDVDTPDPDHHVLTDKN 681

Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
            + Q+  N+LSNA  F      + ++T     +   + V + G G++    E+  +PF Q
Sbjct: 682 RIMQVLTNLLSNACKFAYPETAVTVTTAPV-GDMTKISVTNLGNGISKEFRERIFQPFSQ 740

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
              S   +  GTGLGL +++ +V+A  G+    S P + T+     P
Sbjct: 741 AEASNTRQRGGTGLGLNISRHLVEAMGGEIGFDSVPGEETVFWFTCP 787


>gi|293371966|ref|ZP_06618367.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
 gi|292633084|gb|EFF51664.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
          Length = 500

 Score =  279 bits (715), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 99/515 (19%), Positives = 181/515 (35%), Gaps = 59/515 (11%)

Query: 323 PETVDKCPIPFFVYSHGN-LFYANP-SFLLLTKYKSVDDIEIAG-------------GLS 367
            + ++  P    +      +   N  +F  L  + SV+ +                  LS
Sbjct: 11  DDLLNILPDGVIILDINREVIQLNQQAFTELHVHSSVNAMMPLPTNKIFKLLNKKEDILS 70

Query: 368 TLLDAPKLSDNN---AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
           T+L+  +             M  + D T         T++        + F         
Sbjct: 71  TILEEIRQGKKVYSLPEHTFMQEQVDYTQFPIRGEFATMENEEGEKNILFFFRNITVELT 130

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
            E +    ++   +         +I   +              ++             + 
Sbjct: 131 QEYILNTALQRTRIYPWYY----DISRSEF------------TLD---------DRYFEH 165

Query: 485 FGYPVED---ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
            G P  +   +  + +   +  +    M       LS +              +      
Sbjct: 166 LGIPAGENNTLTMEEYVNMIHPDDRQTMADAFVVQLSGNTTFDKTVPFRLRRGDGTWEWF 225

Query: 542 RIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
                 +   S            I E+K  +N L  A+K AE+    K  FLA +SHEIR
Sbjct: 226 EGQSTYIANISGHPYRLVGICLSIQEYKDIENTLIEARKKAEESDRLKMAFLANMSHEIR 285

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TPL AI+GFS+VI +  +  L      ++   I  +   ++ +++D+LD+SKIES  +  
Sbjct: 286 TPLNAIVGFSDVIGST-YDELSEEERADFVRLISINSEHLVRLIDDILDLSKIESNTIKF 344

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
            +   SL   + +     Q+  N   I I+    ++   I  D   +KQ+  N ++NA  
Sbjct: 345 TYSNYSLKSIMKDIEKE-QVVKNVPEIEIKAILPDDDIYITTDATRLKQVICNFINNARK 403

Query: 718 FTPSGGQIIIS--TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           FT  G  I         +++ V L V DTG G+     ++    F ++   +    +GTG
Sbjct: 404 FTEEG-YIHFGFMVNPENDDSVCLFVEDTGEGIPQECQKEIFDRFYKVNTFK----QGTG 458

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           LGL + K +V+   G   + S   +G+   +  PL
Sbjct: 459 LGLSICKTIVEHLQGSISVVSEVGRGSRFTVTLPL 493


>gi|260175189|ref|ZP_05761601.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|315923421|ref|ZP_07919661.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|313697296|gb|EFS34131.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
          Length = 391

 Score =  279 bits (715), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 95/388 (24%), Positives = 156/388 (40%), Gaps = 31/388 (7%)

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN-------------RAVSKLFGYP 488
              RK+E       +IL+     I +I+ +  +L TN             + V  L    
Sbjct: 7   RESRKLERTSHIAGAILKNVHAFILLIDNDFKVLKTNYYQKTGTRKGTEEKRVGDLLQCR 66

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS----LRII 544
                           +  +                LE      T +   +     +   
Sbjct: 67  NALAAEGGCGTHSFCGSCPIRTAIRQAFEQRRNFTDLEATLSVVTSDNTTVECDAVISGS 126

Query: 545 IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
              L       +T+HD++  KQ + +L  AK+ AEK     S FLA +SHEIRTPL AI 
Sbjct: 127 YFLLNEEENMVITVHDVTRRKQAEKELQLAKEKAEKADISNSAFLANMSHEIRTPLNAIT 186

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           GF+EV+              +Y   I  + +L++ +VND+LD+SKIE+G +      V +
Sbjct: 187 GFAEVL----GSATTEEEKAQYQEIIKMNADLLMQLVNDILDMSKIEAGTLEFVQTTVDV 242

Query: 665 DEAVSEAISLVQLYANEKR--ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
           ++ +S+   L Q+  N+    I I    + +   I  D   V Q+  N   NAI FT  G
Sbjct: 243 NQLLSDLQQLFQMRVNDAGGKIQIIAEPSCSSCMIQTDRNRVAQVLSNFAGNAIKFTHEG 302

Query: 723 GQIIISTTHTSNE-EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
               I   + +   E+   V+DTG G+   +L    + F ++   +    +G GLGL ++
Sbjct: 303 S---IRLGYEARNTELYFYVKDTGAGIPAEKLPDVFERFVKLNKDK----KGAGLGLSIS 355

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           + +V    G+    S   +G+      P
Sbjct: 356 QTIVAKLGGQIGADSVEGEGSTFWFTIP 383


>gi|209884541|ref|YP_002288398.1| multi-sensor hybrid histidine kinase [Oligotropha carboxidovorans
           OM5]
 gi|209872737|gb|ACI92533.1| multi-sensor hybrid histidine kinase [Oligotropha carboxidovorans
           OM5]
          Length = 846

 Score =  279 bits (715), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 106/687 (15%), Positives = 216/687 (31%), Gaps = 48/687 (6%)

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFR-GFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212
           G +   P  L  L + +    F+ F    GIV       +   +    D  F  L     
Sbjct: 47  GRSQAQPFILGLLALLAMVGLFTLFAFAAGIVRFADRVAENPLMRPMADHAFDGLAVTDA 106

Query: 213 GHSSV-EKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271
               V     Y   +  +    +R   +V       +     L          +E     
Sbjct: 107 RGQIVYFNNAYLALTGANGAQDVRPVERVFIGNPDVSEAVFRLLKAAKEGKRQQEEVRIT 166

Query: 272 QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI 331
             +     L    +       ++           R+       F E ++   E +D  P 
Sbjct: 167 DAERGARWLRMRVQPLGQSRRESRYVVWSVADITRDRERQEDVFQELQHAI-EYLDHAPC 225

Query: 332 PFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390
            FF V   G+L Y N +      Y   +       L+ +L              +L    
Sbjct: 226 GFFSVTPTGDLAYVNATLANWLDYDLAEIGSGGLKLTDILSG--------DGASLLTSIT 277

Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK-MEI 449
                    +  +     N   M    + K     +              R         
Sbjct: 278 PEPGEVKTEVFDVDLRMRNGKTMPARLYHKLAFGADGAAGASRTLVINRARDEHADPQRA 337

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG-YPVEDILRKPFTVFLEQNTPSV 508
             ++     + T   IA ++  G I+  N   +KL      +    K     +       
Sbjct: 338 AEVRFMRFFDHTPMAIATVDSSGQIVRANARFAKLTQSLSAQAAANKSIFAVVHDRDRGE 397

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT--MHDISEWKQ 566
           +   +                +   ++++     +   +            + + +E +Q
Sbjct: 398 VTAIIGRAAE-GQGDIPPVEAMLDGEKDRWAQFFVTSVEHDERDAEVAIVYLLETTEKRQ 456

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
            +N+ + ++K+              ++H+    L+AI+  ++ + N       +P + + 
Sbjct: 457 LENQFNQSQKM-----QAVGQLAGGIAHDFNNVLSAIMMANDFLLNAH--KPTDPSFQDI 509

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
              I ++      +V  LL  S+    +  L  + + L +A+S+   L++    EK + +
Sbjct: 510 MQ-IKQNATRAATLVRQLLAFSR----RQTLRPQVLDLGDALSDLTMLLKRLIGEK-VKL 563

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT--------------HT 732
                 ++  +  D+   +Q+ +N+  NA    P GG++++ T+                
Sbjct: 564 DVIHGRDLWPVRVDVSQFEQVIVNLAVNARDAMPEGGKLVVKTSNVAAQEIGRLGIKEMP 623

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
           + + V + V D+G GM    ++K  +PF     S +  G+GTGLGL     +V    G  
Sbjct: 624 AADYVRIDVGDSGTGMPPEVMDKIFEPFF----STKEVGKGTGLGLSTVYGIVKQTGGFI 679

Query: 793 YIFSTPAKGTLIEIIFPLYDTSHPHDC 819
           Y+ ST  +GT   I  P +      + 
Sbjct: 680 YVDSTQGEGTTFSIYLPRHIVEKEAEA 706



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 48/380 (12%), Positives = 100/380 (26%), Gaps = 24/380 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL--KRQNTWYGK 146
            DA G +   +       G    + +  R  +   I + D +  +  LL   ++     +
Sbjct: 104 TDARGQIVYFNNAYLALTGANGAQDV--RPVERVFIGNPDVSEAVFRLLKAAKEGKRQQE 161

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                 +       + +   P+  ++R  S +  + +  + R       + + L     +
Sbjct: 162 EVRI-TDAERGARWLRMRVQPL-GQSRRESRYVVWSVADITRDRERQEDVFQELQHAIEY 219

Query: 207 LHEIKKGHSSVEKEKYD-----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
           L     G  SV             +         + +    LT+  +     L T   P 
Sbjct: 220 LDHAPCGFFSVTPTGDLAYVNATLANWLDYDLAEIGSGGLKLTDILSGDGASLLTSITP- 278

Query: 262 LTSEESSLPEQEDFHTINL---NQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
              E  +     D    N          +        +  S   + +R     +      
Sbjct: 279 EPGEVKTEVFDVDLRMRNGKTMPARLYHKLAFGADGAAGASRTLVINRARDEHADPQRAA 338

Query: 319 ENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
           E       D  P+    V S G +  AN  F  LT+  S          + + D  +   
Sbjct: 339 EVRFMRFFDHTPMAIATVDSSGQIVRANARFAKLTQSLSAQAAANKSIFAVVHDRDRGEV 398

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
              I                A L     + E      F      +   +         E 
Sbjct: 399 TAIIG--RAAEGQGDIPPVEAML-----DGEKDRWAQFFVTSVEHDERDAEVAIVYLLET 451

Query: 438 VDTRINKRKMEIEVMQLCSI 457
            + R  + +   +  ++ ++
Sbjct: 452 TEKRQLENQF-NQSQKMQAV 470


>gi|153805851|ref|ZP_01958519.1| hypothetical protein BACCAC_00090 [Bacteroides caccae ATCC 43185]
 gi|149130528|gb|EDM21734.1| hypothetical protein BACCAC_00090 [Bacteroides caccae ATCC 43185]
          Length = 396

 Score =  279 bits (715), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 86/374 (22%), Positives = 158/374 (42%), Gaps = 27/374 (7%)

Query: 448 EIEVMQLCS-ILEATSDGIAIINREGIILST--NRAVSKLFGYPVEDILRKPFTVFLEQN 504
           E    +  + IL+A  D + + + +  I+    + + + + G   ++I        L   
Sbjct: 36  ERFREKYSTRILDALPDMLTVFDHDANIIELASSPSTNHVEGINADNITHSNVKDILPPE 95

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564
               +   +  ++      T     +    +  L      I  L  +        DISE 
Sbjct: 96  AYESVRQNMDRVILTGESSTSRHDLML---DGILHHYENRIFPL-DNEYLLCMCRDISEQ 151

Query: 565 -------KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
                  K+++ +L  A+  AE+    KS FLA +SHEIRTPL AI+GFS+++ +     
Sbjct: 152 WNAEQTNKKQQKELEAARIKAEESDRLKSAFLANMSHEIRTPLNAIVGFSKLVID----A 207

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
                  +YA  I+R+  ++L++ ND+LD+S +E+  ++ +  P+ L +   +       
Sbjct: 208 ECTNEKEQYAEIIERNSEILLNLFNDILDLSSLEADSLSFNIRPIKLIDICLQLEQQFCY 267

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS-NEE 736
              +    +     +    +  D   + QI  N+LSNA  FTP G    I   +    + 
Sbjct: 268 KV-KNGTKLILDDVDTELYVSGDWNRIIQIISNLLSNAAKFTPKG---EIHFGYREKEDF 323

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           V   V+D+G+G+    +    + F           +GTGLGL L + +V+   G+ ++ S
Sbjct: 324 VEFYVKDSGIGIPAERVATIFQRF----GKINDFVQGTGLGLTLCRMLVEKMGGRIWLRS 379

Query: 797 TPAKGTLIEIIFPL 810
              KG+      PL
Sbjct: 380 QEGKGSRFYFTLPL 393


>gi|301309055|ref|ZP_07215000.1| two-component sensor histidine kinase [Bacteroides sp. 20_3]
 gi|300833081|gb|EFK63706.1| two-component sensor histidine kinase [Bacteroides sp. 20_3]
          Length = 571

 Score =  279 bits (715), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 85/394 (21%), Positives = 178/394 (45%), Gaps = 34/394 (8%)

Query: 424 FPENMPQNGIEPEDVD-TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
                  N +     +  +     +      + +I+ + ++ I  ++R+  IL  N    
Sbjct: 201 EGVAKSFNRMAERLTEYRKSTLADIIQGKKYIEAIVNSITEPIIGLDRDRKILFANNEAL 260

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE--EKLLS 540
            +     E+++ K  +        S+ N  L  ++   ++ + +K  L    +  E    
Sbjct: 261 TILNLKRENVIGKSASEL------SLRNDLLRRLVRELIQPSEKKEPLKIYADNKESYFQ 314

Query: 541 LRIIIKKLPFSS------CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
           ++ I  ++  +          + + +I+E+K              +  S K+ F++ +SH
Sbjct: 315 VQYIPIRVLENGEAEVYVGDVILLKNITEFK--------------ELDSAKTTFISTISH 360

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           E++TP++AI+   +++++ R G + N      A  I  S N +L+I ++LL ++++E+GK
Sbjct: 361 ELKTPISAIMMSLKLLEDARVGAM-NDEQKALAESIKESSNRLLEITSELLKMTQVETGK 419

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714
           + L+ +     E +  AI   Q+ A+     I   +   I ++  D   +  +  N+LSN
Sbjct: 420 LQLNPKITKPIELIEYAIKANQVQADRFNCHIEVEYPEKISKLFVDSEKIAWVLTNLLSN 479

Query: 715 AIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           AIH+TP  G+III      +  V + V+D G G+     +     + ++P +   + +G+
Sbjct: 480 AIHYTPENGRIIIGARQQDH-SVEIYVQDFGKGIDPRYHQSIFDRYFRVPGT---KVQGS 535

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           GLGL ++K  V+A+ G   + S   KG+   I F
Sbjct: 536 GLGLAISKDFVEAHGGTLSVDSAVGKGSTFVIKF 569


>gi|294507245|ref|YP_003571303.1| protein containing histidine kinase domain [Salinibacter ruber M8]
 gi|294343573|emb|CBH24351.1| protein containing histidine kinase domain [Salinibacter ruber M8]
          Length = 746

 Score =  279 bits (715), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 100/552 (18%), Positives = 190/552 (34%), Gaps = 62/552 (11%)

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLST 368
           +     +  E       +      +  +    L + N +   +  Y S  ++        
Sbjct: 187 AAWKKVENQEARLRSIAENVSDGIYRSTPDEGLVFGNQALADMFGYSSPQELLQMDS-EA 245

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
           L   P   D        L R          R    +     +           ++     
Sbjct: 246 LYAEP---DKRKQLAAELRRGTSELDGMEIRF---RRKDGTTFTGLLSGTVVRDEEGTAQ 299

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD------------------------- 463
             +G        +  +  ++   ++L + L   +D                         
Sbjct: 300 YYDGAITNITQLKEQQHALQKRRVKLEA-LYTATDSLLRASSRKEVGQVLTELVQDTLGY 358

Query: 464 -GIAIINREGIILSTNRAVS------------KLFGYPVEDILRKPFTVFLEQNTPSVMN 510
            G++    EG +L                   ++ G        +     +  +      
Sbjct: 359 RGVSTRFAEGGVLKPTHVAESVHEFMPERPAFEIGGESAIAEAYRTGETLIVPDLQKAEI 418

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI---IIKKLPFSSCYSLTMHDISEWKQ- 566
               +  +L     +     G           +       +     Y++ + D  + +Q 
Sbjct: 419 DDPNDYGALRSAVVVPLGEHGVFSVGSPTPGAVGTFDTHLIEVLGTYAMVVLDRLQQEQV 478

Query: 567 ---EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP-- 621
               K +   A+  A + S  KS FLA +SHEIRTPLT+IIGF++ I  +       P  
Sbjct: 479 LRSAKEQAERARARAVEASKAKSAFLANMSHEIRTPLTSIIGFADAIGEEIQSLKDCPDE 538

Query: 622 ----RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
               +   ++  + + G  +LD ++ +L++SK+ESG++ L  E V L E   +    ++ 
Sbjct: 539 ANLVQLDRFSELVGQGGKRLLDTLDAVLNLSKLESGQIELAEEAVDLVEKTRQVAEELRP 598

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737
            A EK + +      +     AD   V+ +  N+LSN I +T  GG + +    T+ + V
Sbjct: 599 SAQEKDLRLDLQMGADEILARADEGGVQIVLQNLLSNGIKYTEEGG-VQVRVHRTAEDAV 657

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
            L V D+G+GM     E   +PF Q       + EG+G+GL + K  V+   G+  + + 
Sbjct: 658 -LEVEDSGIGMEPERAEALFEPFRQASEGLSRKFEGSGVGLAVTKKAVEQMDGRVDVETE 716

Query: 798 PAKGTLIEIIFP 809
             KG+   +  P
Sbjct: 717 KGKGSRFVVRLP 728



 Score = 46.6 bits (109), Expect = 0.017,   Method: Composition-based stats.
 Identities = 28/307 (9%), Positives = 73/307 (23%), Gaps = 20/307 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            +       L   ++ L    G  + + +     +       D    +   L+R  +   
Sbjct: 210 IYRSTPDEGLVFGNQALADMFGYSSPQELLQMDSEALYAE-PDKRKQLAAELRRGTSELD 268

Query: 146 --KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +      +GT       L+   +         + G  I ++ ++     AL KR  K 
Sbjct: 269 GMEIRFRRKDGTTFTGL--LSGTVVRDEEGTAQYYDG-AITNITQLKEQQHALQKRRVKL 325

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
            +          +  +++              +               +    +   +  
Sbjct: 326 EALYTATDSLLRASSRKEVGQV-------LTELVQDTLGYRGVSTRFAEGGVLKPTHVAE 378

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
           S    +PE+  F     +   +    G            +   N                
Sbjct: 379 SVHEFMPERPAFEIGGESAIAEAYRTGETLIVPDLQKAEIDDPNDYGALRSAVVVPLGEH 438

Query: 324 ETVD-KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
                  P P  V +             +    ++  ++       L  A + ++    +
Sbjct: 439 GVFSVGSPTPGAVGTFDTHLI------EVLGTYAMVVLDRLQQEQVLRSAKEQAERARAR 492

Query: 383 PVMLYRS 389
            V   ++
Sbjct: 493 AVEASKA 499


>gi|218780146|ref|YP_002431464.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218761530|gb|ACL03996.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 651

 Score =  279 bits (715), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 74/514 (14%), Positives = 177/514 (34%), Gaps = 40/514 (7%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
               +   +  ++    ++       +   G +  AN   + ++  ++++++     L  
Sbjct: 21  ARDLSRLGDSSDIFSAVINNANEAVLITQDGVIQAANKKAMEISG-RTMEELSSKPFLEF 79

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
           L       D        L R D        +L  ++   ++           A  +    
Sbjct: 80  LHPE----DRQLAMERYLTRLDGREP--EEKLWVVRLMDKSGGLRYLESRGAAIPYEGKA 133

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
                  +       + ++     Q   ++E  SD I II ++  +   NRA + + GY 
Sbjct: 134 AVLHFFTDVTRRLQAEAQIRASEAQYRYLVENASDAICII-QDQELRFFNRAAAAMLGYT 192

Query: 489 VEDILRKPFTVFLEQNTP-SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
            +++L       +  +    V+N +L  +    +        +  + +     L   + +
Sbjct: 193 PQEVLEIDLLDLVHPDFRERVVNAHLKRLKGEKVPNPYNFDAIAKSGKRINAQLTAAVIE 252

Query: 548 LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
                   + + D++E ++ + ++  A+++              ++H+    L A+ G +
Sbjct: 253 WEGRPALLVLVRDVTESRKREEQIQQARRM-----EALGALAGGIAHDFNNLLMAVQGHA 307

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
            ++         + +  +    I++      ++ + LL  +K           P +L+  
Sbjct: 308 SLML---LSSDLDRKKAKSLRCIEQCVRSGAELTSQLLGYAK----GGKYQVRPHNLNTI 360

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727
           +    ++       K I I    +  +     D   ++Q+ LNI  NA H    GG + I
Sbjct: 361 IENTAAMFGR--ARKEIRIHLDLSPELWASEVDRAQIEQVLLNIYVNAWHAMDPGGDLFI 418

Query: 728 ST-------------THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
            +                  +   + + DTGVGM     ++  +PF       +  G GT
Sbjct: 419 RSCNCTVDEVQARGMEVAPGKFAKISITDTGVGMDEDTRKRIFEPFFTT----REMGRGT 474

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           GLG+  A  +V  + G  +++S   +G    +  
Sbjct: 475 GLGMASAYGIVKNHGGFIHVYSEKGRGATFSVFL 508


>gi|282898162|ref|ZP_06306153.1| Histidine Kinase [Raphidiopsis brookii D9]
 gi|281196693|gb|EFA71598.1| Histidine Kinase [Raphidiopsis brookii D9]
          Length = 624

 Score =  279 bits (715), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 82/260 (31%), Positives = 136/260 (52%), Gaps = 6/260 (2%)

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
           Y +    I   K     L       E ++  K+ FLA  SHEIRTPLT+IIGF+E++  Q
Sbjct: 208 YLIQTQKIQTLKYSYQSLLQFSYNLEHKNKLKNQFLANTSHEIRTPLTSIIGFTELLLAQ 267

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
            +      R+ EY   I  SG  +L ++ND+LD+SKIE+ ++ + +E V +       ++
Sbjct: 268 GYQAE-RERHQEYLQIIQSSGKHLLSLINDILDLSKIEANQLEVQWEVVDIPSLCKSVLA 326

Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
           LV+  A +K + ++   + ++  +L D   +KQ+ LN+L NAI FT  G  + +      
Sbjct: 327 LVKEKAGDKGLKLQIQISEDVSTLLVDPLRLKQMLLNLLFNAIKFTNVGS-VGLRVVIKD 385

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI---RGEGTGLGLPLAKAMVDANMG 790
           +  +   V DTGVG++  +L    +P+ Q+ N+      +  GTGLGL + K + + + G
Sbjct: 386 S-WLRFTVWDTGVGISEEDLSLLFRPYTQLVNTINTQIDKNHGTGLGLIVTKQLAEIHGG 444

Query: 791 KFYIFSTPAKGTLIEIIFPL 810
              + S   +G+   II PL
Sbjct: 445 SIEVRSQLNQGSEFTIILPL 464


>gi|158339071|ref|YP_001520248.1| two-component hybrid sensor and regulator histidine kinase
            [Acaryochloris marina MBIC11017]
 gi|158309312|gb|ABW30929.1| two-component hybrid sensor and regulator histidine kinase
            [Acaryochloris marina MBIC11017]
          Length = 1764

 Score =  279 bits (715), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 132/796 (16%), Positives = 255/796 (32%), Gaps = 97/796 (12%)

Query: 79   IPRTVRFTWNIDAHGYLKEISEELPKTIGN-YAFKMIGMRLCDV-SDILHIDPNNHIGDL 136
                    W  D        ++   +  G   A  +IG    ++       + +      
Sbjct: 753  DSIPQAIFWK-DKASRYLGCNQAFAQEAGFNTAEDIIGKTDQEMPWSSEEAEWHRLSDLE 811

Query: 137  LKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRAL 196
            +              +        +D   +P+++   +  G  G                
Sbjct: 812  VMNSKQPQFHVLETHLRADGTKTWLDTNKVPLHNLKGQVVGLLG--TSEDITERIQIETE 869

Query: 197  GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256
             ++  ++   L EI             + S       L   ++ S  T        ++ +
Sbjct: 870  LQQQLQREQVLSEITNQIRRSLDLDVLLKSAVDQLRDLFQVSRCSFFTYSDQPNSQLILS 929

Query: 257  EKYPLLTSEESSLPEQEDF-------------HTINLNQYTKKQYFGTLQNN----SKES 299
             +       E++L +                     ++   ++    T +      S   
Sbjct: 930  AQAYAHPEWEAALSDPLPTSDHPRFIKLLANDRVHAVSDIWQEPSLSTTEKELLSTSLRI 989

Query: 300  FEYLSHRNH--------------PSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYAN 345
              YLS R                     +  +  +L      +  I              
Sbjct: 990  GAYLSVRTAFKHHPNGIIFLDQCERRRNWTKDEISLLGAVAAQLGIAVAHADLLADEQKQ 1049

Query: 346  PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM-LYRSDRTCIAASARLHTIQ 404
               L L  ++  ++I         L           + V  + +S    +     +  ++
Sbjct: 1050 RQNLNLQNHRLQEEIVNRNQAEKALAKQLEKAELLEQIVRQIRQSLEPQLIFRTAVTQVR 1109

Query: 405  WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN---------KRKMEIEVMQLC 455
                      +   E A      M    + PE                +   + +  +  
Sbjct: 1110 KLLAVDRVCIYRFIEDAGYSQGMMVAEEVLPEFPSALTAQVRDQCFGDEYATQYQNGRFQ 1169

Query: 456  SILEATSDGIAIINREGIILSTNRAVSKLFGYPVED----ILRKPFTVFL-------EQN 504
            ++ +    G+     E  I         LF          +        L        ++
Sbjct: 1170 AVADIYDAGL----SECHIEI-----LDLFHIRANLVLPLLQGDNLWGLLCIHQCSGPRS 1220

Query: 505  TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564
                   ++ +I +       +   L   + ++ + L +  ++L F++            
Sbjct: 1221 WQPDEIEFVQKIANQLGIALYQAELLLKEQHQRHV-LSVRSQELTFNNQQLA-------- 1271

Query: 565  KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
             + K +   A++ AE+ +  KS FLA +SHE+RTPL AI+GFS++I      P      +
Sbjct: 1272 -KAKQEAETAQRKAEQANRAKSIFLANMSHELRTPLNAILGFSQLISRDPSTPN---YQL 1327

Query: 625  EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
            E    I+RSG  +L ++ND+L +SKIE+G+ +L  + V L   +    +++ L A +K +
Sbjct: 1328 EQLEIINRSGEHLLALINDVLTMSKIEAGRSSLRSQIVDLPLLLDTVENMLGLKAEKKGL 1387

Query: 685  LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-------- 735
             +        P  I  D   ++Q+ +N+LSNAI FT SG    +     SN         
Sbjct: 1388 KLIFDRGLTPPHYIRTDPGKLRQVLMNLLSNAIKFTTSG---HVQLCLESNTLDTPEGAG 1444

Query: 736  -----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
                 +V   V DTG G+   EL+   +PF Q    +Q + EGTGLGL +++  V    G
Sbjct: 1445 VPPLLDVRFTVSDTGSGIAPEELKLLFEPFAQTETGRQSQ-EGTGLGLAISRQFVQIMGG 1503

Query: 791  KFYIFSTPAKGTLIEI 806
                 S   +GT +  
Sbjct: 1504 NLTAHSIHNQGTTLTF 1519



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/358 (11%), Positives = 97/358 (27%), Gaps = 31/358 (8%)

Query: 238 NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297
            +V++       + D+    +  L+  ++S     ++     L     ++   +L +   
Sbjct: 514 QQVANQFAVAVQQADLAIQLQQELVERQQSDRALAQELQRSQLLGKIAQKVHESLDSLHV 573

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-------NLFYANPSFLL 350
                +  R     S       + T E      + F  Y           +  A+  +  
Sbjct: 574 FETAVVEIRRALKASRCNIYIYSATDE--PHFSLMFHDYEADYPDRGPEIVRLADHEYAR 631

Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
               +S   +        LL       N      M+          +  +   Q +R   
Sbjct: 632 RLVSQSEAIVSPQVQSDPLLANGLPMVNALSIQSMVSIRTSYQGDVNGAITISQCDRIRD 691

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS-------------- 456
             +  +    A      +               + ++  +  QL +              
Sbjct: 692 WTLEEVDLLAAVATEVGI-ALAHANLLAQELQQRAQLSQKNQQLQTEIEEKKQTQTLLKL 750

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT-- 514
           ++++    I   ++    L  N+A ++  G+   + +       +  ++     H L+  
Sbjct: 751 VMDSIPQAIFWKDKASRYLGCNQAFAQEAGFNTAEDIIGKTDQEMPWSSEEAEWHRLSDL 810

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF----SSCYSLTMHDISEWKQEK 568
           E+++    Q     T     +     L      L            T  DI+E  Q +
Sbjct: 811 EVMNSKQPQFHVLETHLR-ADGTKTWLDTNKVPLHNLKGQVVGLLGTSEDITERIQIE 867


>gi|83644635|ref|YP_433070.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83632678|gb|ABC28645.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 957

 Score =  279 bits (715), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 81/246 (32%), Positives = 136/246 (55%), Gaps = 10/246 (4%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  A+K A + S  KS+FLA +SHEIRTPL  IIGF+ ++     GP    +  +  N 
Sbjct: 278 ELDMARKEAIEASRVKSEFLANMSHEIRTPLNGIIGFTHLLLKSNLGP----QQRDQLNT 333

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I +S  ++L I+ND+LD SKIE+GK+ L    V+L E V + ++++   A+EK + +   
Sbjct: 334 ILKSSEILLTIINDILDFSKIEAGKLVLDNTTVNLQEIVEDVLTMLAPGAHEKNLDLAGL 393

Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDT 744
             +++P  I+ D   +KQI  N+++N I FT SG ++++        +    + + V D+
Sbjct: 394 VYSDVPSHIMGDPLRIKQIVTNLVNNGIKFTQSG-EVVVRVMLEDESDESSLIKITVTDS 452

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           GVG++  + +     F Q   S   R  GTGLGL +++ + +   G+  + S   KG+  
Sbjct: 453 GVGLSRVQQQTLFSAFSQADASTARRFGGTGLGLVISRRLTEQMGGQIGVESELGKGSTF 512

Query: 805 EIIFPL 810
            I  P+
Sbjct: 513 WIELPV 518


>gi|67924970|ref|ZP_00518357.1| GAF:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal
           [Crocosphaera watsonii WH 8501]
 gi|67853183|gb|EAM48555.1| GAF:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal
           [Crocosphaera watsonii WH 8501]
          Length = 568

 Score =  279 bits (715), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 90/466 (19%), Positives = 171/466 (36%), Gaps = 54/466 (11%)

Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450
               A    +  I   ++ +  +  +     +     +  + +       +    K+  +
Sbjct: 104 GQTFALELVISPILPKQKQATTVLVMGHPLQDNDLSLINNSALPTHPDPYQKLLTKIARK 163

Query: 451 VMQ---LCSI----LEATSDG-------IAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
           + +   L +I    +++  +        +  I  E   L           Y   ++  + 
Sbjct: 164 IRRTLNLETIWQQTVDSLGEALQVSRCLMIAIGPEQGYLDV--KAEYCLPYCPSELGSRL 221

Query: 497 FTVFLEQNTPSVMNHY---LTEILSLDLRQTLEKITLGS--------------TKEEKLL 539
                     ++         ++L    +     I                   +     
Sbjct: 222 IPQEEPLWQQALNQREPLIFEQLLENSSQVQSNLIVSTFYQNQRNGLICLQQCDRSRYWS 281

Query: 540 SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
              I + +       +   H          +L  A   AE+ S  KSDFLA  +HE+RTP
Sbjct: 282 PAEIELIQELADQVGTAIAH-----ATLYQELEQATLAAEEASRLKSDFLASTTHELRTP 336

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  IIGF ++I +            E+     +S   +L+++ND+LDI+KIE+GKM+L  
Sbjct: 337 LNGIIGFLKLILDGMAD--DAEEQQEFLEEAHKSALHLLNLINDILDIAKIEAGKMDLEL 394

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR--ILADLRSVKQIALNILSNAIH 717
             V L E      +     A  K +  R+   + +    +  + + + Q+ LN++SNAI 
Sbjct: 395 GAVELAELFQAVDNFTLPQAQRKHLEFRSKLPSTLTPIVVYGNYQRLLQVMLNLVSNAIK 454

Query: 718 FTPSGGQIIISTTHTSN----------EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
           FT  G  I+++                  V + V DTG+G++  +  K  + F Q+  S 
Sbjct: 455 FTHEGS-IVVNAEIVKKKIHHQNQEFPGHVKVSVTDTGIGVSLDKQAKLFEKFVQVDGSH 513

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFPLYD 812
                GTGLGL +++ +V+A  G+   +S     G+ +    PL  
Sbjct: 514 TKAYGGTGLGLAISQKLVEAMGGQVEFYSMGEGLGSTVTFTVPLEQ 559


>gi|58580142|ref|YP_199158.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84622139|ref|YP_449511.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
 gi|58424736|gb|AAW73773.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84366079|dbj|BAE67237.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
          Length = 769

 Score =  279 bits (715), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 71/250 (28%), Positives = 119/250 (47%), Gaps = 10/250 (4%)

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + + +L  AK+ AE     K +FLA +SHEIRTPL  II   E+I + +          +
Sbjct: 92  ELEQELLRAKQAAEAAMLAKGEFLATMSHEIRTPLNGIIPMLELISSGQLSL----DQRD 147

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
                  S   +L IV+D+LD SK+E+ K+ L     +L E +   + L+Q  A  +++ 
Sbjct: 148 MLQTATSSSLQLLRIVDDILDYSKLEANKLELEITTFNLRELLDGVVQLLQRTAEGRQLR 207

Query: 686 IRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH----TSNEEVILR 740
           +      ++   +  D   ++Q+  N++ NAI FT  G  + I         +   +  +
Sbjct: 208 LSLDIEPSVRLLVRGDPIRLRQVLGNLIGNAIKFTERGS-VDIQLRRLGETRAQHLLRFQ 266

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           VRDTG+G+   +  +  + F Q   S      GTGLGL + K ++D   G+  + S P +
Sbjct: 267 VRDTGIGIAPDQQTRLFRSFAQADASTTRLYGGTGLGLAICKRIIDLMGGRIGVESEPGR 326

Query: 801 GTLIEIIFPL 810
           G+      PL
Sbjct: 327 GSTFWFEIPL 336


>gi|223940459|ref|ZP_03632310.1| Hpt sensor hybrid histidine kinase [bacterium Ellin514]
 gi|223890862|gb|EEF57372.1| Hpt sensor hybrid histidine kinase [bacterium Ellin514]
          Length = 832

 Score =  279 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 81/262 (30%), Positives = 132/262 (50%), Gaps = 15/262 (5%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  Q   +L  A+  AE  +  K++FLA +SHEIRTP+  +I  + ++         N  
Sbjct: 132 QLTQTNRELEAARVAAETAARAKAEFLANMSHEIRTPMNGVIAMTGLLLETNL----NNE 187

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
              Y   I  S   +L I+ND+LD SKIESGK+ L   P +L   V EA+ L+   A EK
Sbjct: 188 QRSYVETIHSSSESLLTIINDILDFSKIESGKLELEHRPFNLRMGVEEALDLLATKAAEK 247

Query: 683 RILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNE--- 735
           ++ +     ++IP  +  D+  ++Q+ +N+LSN I FT  G     + I +         
Sbjct: 248 KLDLAYQMDDDIPSHVHGDVTRLRQVLVNLLSNGIKFTNEGEVFVHVKIHSASPEPTADD 307

Query: 736 ----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
               ++   VRDTG+G+   ++++  K F Q   S   +  GTGLGL ++K +V+   GK
Sbjct: 308 ATRLQLHFTVRDTGIGIHPTQIDRLFKSFSQADASTTRQYGGTGLGLAISKRLVELMGGK 367

Query: 792 FYIFSTPAKGTLIEIIFPLYDT 813
            ++ ST  +G+    + P    
Sbjct: 368 MWVESTLQRGSTFHFLIPFRPA 389


>gi|326478067|gb|EGE02077.1| serine/threonine protein kinase [Trichophyton equinum CBS 127.97]
          Length = 2408

 Score =  279 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 73/251 (29%), Positives = 134/251 (53%), Gaps = 12/251 (4%)

Query: 565  KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
            K  + + +H  K+ E  +  KS FLA +SH++RTP+T +IG SE++K  +     +P+  
Sbjct: 1866 KVAEVEANHNVKLKEDAAKAKSIFLANISHDLRTPMTGVIGLSELLKATKL----DPKQD 1921

Query: 625  EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
             Y   I    + +L ++ND+LD SK+E+GKM +   P++L + ++E +  ++    EK +
Sbjct: 1922 VYVESIRVCADTLLTLINDILDFSKLEAGKMKVSIVPINLRQTIAEVVRALRYTHREKGL 1981

Query: 685  LIRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVI 738
                   +  P   ++ D   + QI +N+LSN+  FTP+G  + +      +      V 
Sbjct: 1982 ETVEDLDSIDPDLLVMGDPVRLHQIFMNLLSNSYKFTPAGS-VTVRAIVEEDTPEKIRVT 2040

Query: 739  LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA-NMGKFYIFST 797
             +V DTG+G++  +L +  +PF Q  +S      G+GLGL + KA+++    G+ ++ S 
Sbjct: 2041 CKVADTGIGISEEQLVRLFRPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGRIWLQSK 2100

Query: 798  PAKGTLIEIIF 808
              +GT +    
Sbjct: 2101 EGEGTTVTFTL 2111


>gi|295703661|ref|YP_003596736.1| two-component sensor histidine kinase/response regulator [Bacillus
           megaterium DSM 319]
 gi|294801320|gb|ADF38386.1| two-component sensor histidine kinase/response regulator [Bacillus
           megaterium DSM 319]
          Length = 917

 Score =  279 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 75/261 (28%), Positives = 126/261 (48%), Gaps = 16/261 (6%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E +  K  L       E  S +KS+FLA +SHE+RTPL +I+  SE+++      L    
Sbjct: 483 ELEAAKEDLEEKAHQLELNSQYKSEFLANMSHELRTPLNSILILSEMLEENAAKTLSEDE 542

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             EYA  I  SG  +L ++ND+LD+SK+ESGK+++    +++ E   +        A +K
Sbjct: 543 -EEYARIIHSSGKDLLALINDILDLSKVESGKLDVLLAEMNMSELPDQIERNFSHVAEQK 601

Query: 683 RILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE------ 735
           ++ ++ + A ++P I   D +  +QI  N+LSNA  FT SG  + +S    ++       
Sbjct: 602 KVQLKINKAQDVPDIIHTDEKRFQQIVKNLLSNAFKFTESGS-VTVSIQRVADHRLTTAM 660

Query: 736 -------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                   + + V DTG+G+   + +   + F Q   +   +  GTGLGL +        
Sbjct: 661 RTIDTDCWLEIAVADTGIGIPKEKHQLIFEAFQQADGATVRKYGGTGLGLSICSEFAKLL 720

Query: 789 MGKFYIFSTPAKGTLIEIIFP 809
            G   + S   KG+   +  P
Sbjct: 721 GGWISLSSEVGKGSTFTLYLP 741


>gi|302504154|ref|XP_003014036.1| hypothetical protein ARB_07756 [Arthroderma benhamiae CBS 112371]
 gi|291177603|gb|EFE33396.1| hypothetical protein ARB_07756 [Arthroderma benhamiae CBS 112371]
          Length = 2418

 Score =  279 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 73/251 (29%), Positives = 134/251 (53%), Gaps = 12/251 (4%)

Query: 565  KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
            K  + + +H  K+ E  +  KS FLA +SH++RTP+T +IG SE++K  +     +P+  
Sbjct: 1874 KIAEVEANHNVKLKEDAAKAKSIFLANISHDLRTPMTGVIGLSELLKATKL----DPKQD 1929

Query: 625  EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
             Y   I    + +L ++ND+LD SK+E+GKM +   P++L + ++E +  ++    EK +
Sbjct: 1930 VYVESIRVCADTLLTLINDILDFSKLEAGKMKVSIVPINLRQTIAEVVRALRYTHREKGL 1989

Query: 685  LIRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVI 738
                   +  P   ++ D   + QI +N+LSN+  FTP+G  + +      +      V 
Sbjct: 1990 NTIEDLDSIDPDLLVMGDPVRLHQIFMNLLSNSYKFTPAGS-VTVRAIVEEDTPEKIRVT 2048

Query: 739  LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA-NMGKFYIFST 797
             +V DTG+G++  +L +  +PF Q  +S      G+GLGL + KA+++    G+ ++ S 
Sbjct: 2049 CKVADTGIGISEEQLVRLFRPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGRIWLQSK 2108

Query: 798  PAKGTLIEIIF 808
              +GT +    
Sbjct: 2109 EGEGTTVTFTL 2119


>gi|256827840|ref|YP_003156568.1| GAF sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM
           4028]
 gi|256577016|gb|ACU88152.1| GAF sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM
           4028]
          Length = 1356

 Score =  279 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 100/507 (19%), Positives = 195/507 (38%), Gaps = 41/507 (8%)

Query: 333 FFVYSHGNLFYANPSFL--LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390
           FF++  G L   +         ++  +   E   G + L                 +   
Sbjct: 443 FFLHDDGELVLTSSYAFTNRQGQFSRLRVGEGLVGQAALEGEILTFARVEDGAPPFHFGP 502

Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450
              +   A            L   F+   +    P +        +          M   
Sbjct: 503 GEIVP--AHFLAAPVFMGKELLGAFLVGREYAFSPLHRQFI---TDIAKNTAVLFNMATS 557

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSK---LFGYPVEDILRKPFTVFLEQNTPS 507
              +  +L    +      ++ ++   N  + +   +      ++  +   + +     +
Sbjct: 558 RGMIADLLRQAQE------QQEMLRVANEELEEQTNMLKESQSELQAQQEELQVTNEELA 611

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQE 567
                L E       Q  E  ++     E+ + L      +   +          E  + 
Sbjct: 612 EQTRALKESERRMQDQQNELRSVNDKLGERAMELEEQKSAIRRKN---------KELLRA 662

Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
           + +L    +  E  S +KS+FLA +SHE+RTPL +I+  S+++ + + G L  P+  E A
Sbjct: 663 QEQLKLKAQELESASRYKSEFLANMSHELRTPLNSILILSQLLSHNKEGNLS-PKQTEAA 721

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
           + I+ SG  +L ++N++LD+SK+E+GK+ LH E + L   +S+   + +  A EK +   
Sbjct: 722 SAINSSGADLLRLINEILDLSKVEAGKVELHLEEMPLTSMISDLQRVFKGVAVEKGVAFL 781

Query: 688 TSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH------------TSN 734
                 +P  +L D   ++Q+  N+LSNA  FT  G  + +S +             ++ 
Sbjct: 782 VEQDPALPETMLTDTHRLQQVLRNLLSNAFKFTDHGS-VTLSISRPGPEVDLPEGIPSAE 840

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
           E + + V D G+G+   +     + F Q   S   +  GTGLGL +++ +     G+  +
Sbjct: 841 EAICIAVTDMGIGIPEDKQGTIFEAFRQADGSTSRKYGGTGLGLSISRELTKLLGGEIRL 900

Query: 795 FSTPAKGTLIEIIFPL-YDTSHPHDCI 820
            S   KG+   +I PL +    P D I
Sbjct: 901 RSQEGKGSTFSLILPLRHHADAPTDEI 927


>gi|153874727|ref|ZP_02002839.1| sensory transduction histidine kinase [Beggiatoa sp. PS]
 gi|152068810|gb|EDN67162.1| sensory transduction histidine kinase [Beggiatoa sp. PS]
          Length = 250

 Score =  279 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 77/237 (32%), Positives = 122/237 (51%), Gaps = 11/237 (4%)

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
             KS F+A +SHE+RTPL AI+G+SE+++      +G   ++     I  +G  +L ++N
Sbjct: 1   MAKSQFIANMSHELRTPLNAILGYSEILQEDAQ-EIGEADFVTDLVKIHSAGKHLLGLIN 59

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702
           D+LD+SKIE+GKM ++ E   L   + E IS +Q   +++  ++   FA N+ ++ AD  
Sbjct: 60  DVLDLSKIEAGKMEIYLEHFELQSLLKEVISTIQPLISKRDNILHLEFAENLGKMEADQT 119

Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHT---------SNEEVILRVRDTGVGMTNYEL 753
            ++Q  LN+LSNA  FT + G I                  + +   V DTG+GMT  + 
Sbjct: 120 KIRQSLLNLLSNAAKFT-NNGIITFFVNRQTANSENSEFKRDWIEFGVSDTGIGMTKTQK 178

Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            K    F Q   S   +  GTGLGL + K  ++   G   + S    G+  +I  PL
Sbjct: 179 NKIFHAFSQADASTTRKYGGTGLGLVITKCFIEMMGGTITVESDYEHGSTFKIRLPL 235


>gi|56475503|ref|YP_157092.1| two-component sensor kinase [Aromatoleum aromaticum EbN1]
 gi|56311546|emb|CAI06191.1| Two-component sensor kinase [Aromatoleum aromaticum EbN1]
          Length = 843

 Score =  279 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 84/641 (13%), Positives = 185/641 (28%), Gaps = 30/641 (4%)

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY 246
                    + K  D+ F+   ++      ++                   +        
Sbjct: 217 RTHVQRRVQVEKERDRLFNLSLDLLCIV-GLDGVFRRANPAFERILGYAPDDLPGHPLLD 275

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
             H DDV  T +     S    +  +     ++ +          ++             
Sbjct: 276 LVHPDDVSDTVEQMRRLSGGEPVSLENRCRCVDGSFKWLAWSINPVREEKLVYAVAHDIT 335

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365
              +         +      +        +   G + YAN +F  +  ++  + I    G
Sbjct: 336 GRKAGEDALRAESSFRKAMEESVVTGMRAIDLDGRITYANAAFCRMVGFEPEELI----G 391

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
           +S       L D       +          A   +  I+      L   F      +   
Sbjct: 392 VSRPFPYWPLEDLQLCSDNLDLTLLGRAPPAGFEM-RIRRKNGERLDARFYLSPLIDNSG 450

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSKL 484
                     +  + +  +  +E    +  ++L+     + + +     IL  NRA   +
Sbjct: 451 TQTGWMASVTDITEPKRIRAALEAAHERFEAVLDGLEAAVFVADAGSDEILFANRAFKSI 510

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK-EEKLLSLRI 543
            G+   D + +                     L                    +   +R 
Sbjct: 511 HGF---DAVGRTVQGVAVPQPERGDYRLDPRALKPADVPRELFDGELQHPLSGRWYHVRE 567

Query: 544 IIKKLPFSSCY-SLTMHDISEWKQEKNKLSHAKKIAEKESSH--KSDFLARVSHEIRTPL 600
              +             DI+E KQ         +  ++ S      +  + ++HE+  PL
Sbjct: 568 RATRWVDGRVVRMGIATDITERKQTAEVSRQQAERLQRTSRLITMGEMASTLAHELNQPL 627

Query: 601 TAIIGFS-EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
            AI  +    +   + G + +   +               I+  + +  K    K     
Sbjct: 628 AAIANYCMGCVTRIQSGNVRSEDLLVAMQKASFQAERAGKIIRRVREFVK----KSEPRR 683

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719
             V + E + +AI   ++ A      I    A  +P + AD   ++Q+ LN++ N +   
Sbjct: 684 SAVQIGEVLDDAIGFAEIDARRMSSRIVADVAAGLPAVFADRIMIEQVVLNLVKNGLDSM 743

Query: 720 ---PSGGQI-IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
              P   ++ ++         + + V D G G+      +   PF         + EG G
Sbjct: 744 SDLPRDQRVLVVRARALGPSAIEVSVMDRGHGIDEDARARLFTPFYTT------KTEGMG 797

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           +GL + +++++ + G+  + S P  GT+     P    S P
Sbjct: 798 MGLNICRSIIEFHDGRLVVDSNPEGGTIFSFTLPTEVASEP 838



 Score =  107 bits (267), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 41/471 (8%), Positives = 115/471 (24%), Gaps = 53/471 (11%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +   G  +  +    + +G     + G  L D+     +         L        +  
Sbjct: 244 VGLDGVFRRANPAFERILGYAPDDLPGHPLLDLVHPDDVSDTVEQMRRLSGGEPVSLENR 303

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
              ++G+  +  +  +  P+            + + H            +        + 
Sbjct: 304 CRCVDGS--FKWLAWSINPVREEK------LVYAVAHDITGRKAGEDALRAESSFRKAME 355

Query: 209 EIKKGHSSVEKEKYDIFSQQSPP--PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT--- 263
           E              I    +           ++  ++  + +            L    
Sbjct: 356 ESVVTGMRAIDLDGRITYANAAFCRMVGFEPEELIGVSRPFPYWPLEDLQLCSDNLDLTL 415

Query: 264 -SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP----SLSAYFDEG 318
                    +      N  +   + Y   L +NS     +++          + A  +  
Sbjct: 416 LGRAPPAGFEMRIRRKNGERLDARFYLSPLIDNSGTQTGWMASVTDITEPKRIRAALEAA 475

Query: 319 ENLTPETVDKCPIPFFVYSHG--NLFYANPSFLLLTKYKSVD------DIEIAGGLSTLL 370
                  +D      FV   G   + +AN +F  +  + +V        +         L
Sbjct: 476 HERFEAVLDGLEAAVFVADAGSDEILFANRAFKSIHGFDAVGRTVQGVAVPQPERGDYRL 535

Query: 371 DAPKLSDNNAIKPVM--LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
           D   L   +  + +     +   +      R    +W     +                 
Sbjct: 536 DPRALKPADVPRELFDGELQHPLSGRWYHVRERATRWVDGRVV----------------- 578

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLC--SILEATSDGIAIINREGIILSTNRAVSKLFG 486
            + GI  +  + +        +  +L   S L    +  + +  E      N+ ++ +  
Sbjct: 579 -RMGIATDITERKQTAEVSRQQAERLQRTSRLITMGEMASTLAHE-----LNQPLAAIAN 632

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
           Y +  + R        ++    M     +           +  +  ++  +
Sbjct: 633 YCMGCVTRIQSGNVRSEDLLVAMQKASFQAERAGKIIRRVREFVKKSEPRR 683



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/275 (10%), Positives = 73/275 (26%), Gaps = 15/275 (5%)

Query: 68  LDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIG--MRLCDVSDIL 125
           L +E++F        V     ID  G +   +    + +G    ++IG          + 
Sbjct: 344 LRAESSFRKAMEESVVTGMRAIDLDGRITYANAAFCRMVGFEPEELIGVSRPFP-YWPLE 402

Query: 126 HIDP-NNHIGDLLKRQNTWYG-KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI 183
            +   ++++   L  +    G +  +    G  L     L+  P+   +   +G+     
Sbjct: 403 DLQLCSDNLDLTLLGRAPPAGFEMRIRRKNGERLDARFYLS--PLIDNSGTQTGWM--AS 458

Query: 184 VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL-----RMKN 238
           V         RA  +   ++F  + +  +    V     D     +           +  
Sbjct: 459 VTDITEPKRIRAALEAAHERFEAVLDGLEAAVFVADAGSDEILFANRAFKSIHGFDAVGR 518

Query: 239 KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT-LQNNSK 297
            V  +      + D     +          L + E  H ++   Y  ++     +     
Sbjct: 519 TVQGVAVPQPERGDYRLDPRALKPADVPRELFDGELQHPLSGRWYHVRERATRWVDGRVV 578

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP 332
                         +    +       T     + 
Sbjct: 579 RMGIATDITERKQTAEVSRQQAERLQRTSRLITMG 613


>gi|311234273|gb|ADP87127.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfovibrio vulgaris RCH1]
          Length = 772

 Score =  279 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 104/640 (16%), Positives = 199/640 (31%), Gaps = 48/640 (7%)

Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD 251
            P      L +   H         +             P   + ++  +  L+   A   
Sbjct: 7   APEEDIHALARTLHHAGIAAAYTLATTPHTLSSALIDEPWDMVLVRPGLPGLSPTDALHL 66

Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN-SKESFEYLSHRNHPS 310
                     +        E                    L  + ++ + E    R H  
Sbjct: 67  ARAARSDLQCVALLHREETESAMALLKGGMDDVVVADDPILPAHMTRLAREAARRREHSR 126

Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
           L              VD   +  F     G+L +AN +F  +  +     +         
Sbjct: 127 LWRDMRHDVQQWRGMVDNTLLGIFRCQPWGDLVHANAAFAHILGHDDPAALVQQLRTE-- 184

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
            +   L  N     +             A LH +         +        +   E + 
Sbjct: 185 -NRSFLDKNRMEHFLSRLSERDCIDDFEADLHKV---DGTLTRVMLHARIIRDDNGEALS 240

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
             G   +    +  +  +     +     ++  D I I + E  I   N+A+ +L G   
Sbjct: 241 IEGTMEDIERRKSFEAVIINAKQEWEKTFDSVPDVIIIFSPELRIRRCNKALGRLLGLHP 300

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK-- 547
            D++ +     L   +       L          T E        +     + +   +  
Sbjct: 301 RDLVGRRCEEVLGSGSSPNDACALLRSQESAGFSTGELHLPFLGGD---FLVTLSPLQTG 357

Query: 548 --LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
                +    +  HDIS  K+ +++L  A+K+              ++H+    L  ++G
Sbjct: 358 QNDEPAGDIVMVAHDISNRKRLESQLRQAQKM-----EAIGTLAGGIAHDFNNILGVMMG 412

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
           ++E+  +Q      +       + +  +G    DI++ +L +S+ E        + +SL 
Sbjct: 413 YTEMSLDQ---ADEDSPMHRRLSEVLEAGKRARDIIHQILTMSRQE----EPSRQMLSLS 465

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP-SGGQ 724
             V E + L++       + IR    +  P +LA+   ++Q+ +N+ +NA H     GG 
Sbjct: 466 SPVRETLRLLRATLPA-NVDIRVDIEDTAP-VLANQSQIQQVVMNLCTNAAHAMRAKGGV 523

Query: 725 IIISTTHTS--------------NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           + ++                        LRVRDTG G+ +   E    PF          
Sbjct: 524 LTVALDAVDLSAEEAQQRSLEGPATFARLRVRDTGHGIPSEIRENIFDPFFTTKKPD--- 580

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            EGTG+GL L   +V  + G     ST   GT  EI+ P+
Sbjct: 581 -EGTGMGLALVHGIVTGHGGHVSFTSTAGFGTEFEILLPV 619



 Score = 43.1 bits (100), Expect = 0.20,   Method: Composition-based stats.
 Identities = 33/331 (9%), Positives = 86/331 (25%), Gaps = 22/331 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIG-NYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144
            +     G L   +      +G +    ++     +    L  +   H    L  ++   
Sbjct: 149 IFRCQPWGDLVHANAAFAHILGHDDPAALVQQLRTENRSFLDKNRMEHFLSRLSERDCID 208

Query: 145 GKTTLWP-IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                   ++GT     + L A  I   N E     G   +          A+     ++
Sbjct: 209 DFEADLHKVDGTLTR--VMLHARIIRDDNGEALSIEG--TMEDIERRKSFEAVIINAKQE 264

Query: 204 FSHLHEIKKGH----------SSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253
           +    +                   K    +          R   +V            +
Sbjct: 265 WEKTFDSVPDVIIIFSPELRIRRCNKALGRLLGLHPRDLVGRRCEEVLGSGSSPNDACAL 324

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
           L++++    ++ E  LP             T         +        ++H        
Sbjct: 325 LRSQESAGFSTGELHLPFLG-----GDFLVTLSPLQTGQNDEPAGDIVMVAHDISNRKRL 379

Query: 314 YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
                +    E +         +   N+      +  ++  ++ +D  +   LS +L+A 
Sbjct: 380 ESQLRQAQKMEAIGTLAGGIA-HDFNNILGVMMGYTEMSLDQADEDSPMHRRLSEVLEAG 438

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
           K + +   + + + R +       +    ++
Sbjct: 439 KRARDIIHQILTMSRQEEPSRQMLSLSSPVR 469


>gi|282899811|ref|ZP_06307773.1| Multi-sensor Hybrid Histidine Kinase [Cylindrospermopsis
           raciborskii CS-505]
 gi|281195293|gb|EFA70228.1| Multi-sensor Hybrid Histidine Kinase [Cylindrospermopsis
           raciborskii CS-505]
          Length = 1024

 Score =  279 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 81/552 (14%), Positives = 195/552 (35%), Gaps = 48/552 (8%)

Query: 286 KQYFGTLQNNSKESFEYLSHR--NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY 343
           +Q          +  E L      H        E E      ++   +  + ++      
Sbjct: 358 EQKVAKRTEELVQLNETLQAEIKQHQKTEIALRESETRLTLALEVAKMGIWDWN----LI 413

Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTL--LDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401
            N      +              S    L      ++  +    L  +       +    
Sbjct: 414 TNDYMWSESVGPMYGLPRGTISPSCYEDLLKLIHPEDAEVLSNQLRIALDNKSGFNIEFR 473

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
            I W   +   +T       N+  E     G        +  ++K+  +     ++L+  
Sbjct: 474 AI-WPDGSLHWLTSTAQVFCNEKGEATRMIGTVQNISTYKQKEQKLYEQ----AALLDIA 528

Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
           +D I + + +  IL  N+   +++G+  E+ + K           + M   +  + ++  
Sbjct: 529 TDAIFVRDFQTEILFWNQGALRIYGWTKEEAIGKHLRDLF--CQKTAMKQEVIALKAVVR 586

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKI 577
             + + +     K  + +++      +           +   DI++ KQ + +    +++
Sbjct: 587 SGSWQGVLRKYKKSGEQVTVESRWTLMFDGDGQPKSILIVDTDITDKKQLEEQFLRTQRL 646

Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
                         ++H++   LT I+G ++++K +      +  + +    I+ +    
Sbjct: 647 -----ESIGTLACGIAHDLNNILTPILGSAQLLKRKSLQ--DHITHPQLLTMIEDNATRA 699

Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697
             +V  +   +K  S +  +    V +   + E ++L +     K I ++T  ANN+  +
Sbjct: 700 SSLVKQVFSFAKGASNEWTI----VQIKHLILEIVNLAKHTFP-KSIKLKTKIANNLSTV 754

Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTT-------------HTSNEEVILRVRDT 744
             D   + QI +N++ NA++  PSGG + I+                     +++ + DT
Sbjct: 755 FGDSTELYQIMINLVVNALNAMPSGGVLTIAAENTFIDGNNLINEKLQQGHYILITIIDT 814

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+GM+    +K  +PF          G G+G+GL +   ++  + G    ++   +G+  
Sbjct: 815 GIGMSQAVADKIFEPFFTTK----ENGLGSGIGLSIVSRIIQKHNGHLQFYTQQGQGSKF 870

Query: 805 EIIFPLYDTSHP 816
           E+  P  +  HP
Sbjct: 871 EVFLPSIEAPHP 882



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 58/152 (38%), Gaps = 6/152 (3%)

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
           I     E+E  +   + E T     + ++ GII + NR  S L     + ++ KP  VF+
Sbjct: 226 IAHELAELEKTRYHQLFELTPYCYLVTDKVGIIKNANRTASTLLSVKKQYLIGKPIIVFI 285

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF----SSCYSLT 557
                      + +      +++ E+      ++ KL    + I  +         +   
Sbjct: 286 APKYRQQFTCQIADF--QPQQESPEQEIYLQPRKGKLFPASVKIVGIYDPHKKEHSWIWL 343

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
           +++IS+ K+ + +L        +E    ++ L
Sbjct: 344 INNISDRKKAEQELEQKVAKRTEELVQLNETL 375


>gi|270158810|ref|ZP_06187467.1| PAS sensor histidine kinase domain protein [Legionella longbeachae
           D-4968]
 gi|289166395|ref|YP_003456533.1| sensory box histidine kinase/response regulator [Legionella
           longbeachae NSW150]
 gi|269990835|gb|EEZ97089.1| PAS sensor histidine kinase domain protein [Legionella longbeachae
           D-4968]
 gi|288859568|emb|CBJ13536.1| putative sensory box histidine kinase/response regulator
           [Legionella longbeachae NSW150]
          Length = 874

 Score =  279 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 90/377 (23%), Positives = 159/377 (42%), Gaps = 23/377 (6%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT---VFLE 502
            +E E   L ++L+   DGI   N  G I   N  + K       D              
Sbjct: 264 AIENEKEFLNAMLDNLEDGIIACNAAGRITVLNHTIQKYINSNKSDKNIDNILGYLNLFT 323

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTM 558
            N   +         +L+         +  TK   +  + I  +K+  S        + +
Sbjct: 324 MNNTPISPDEFPLKRALNGELIRGIELMMHTKNNGVRHVVIDGQKIINSQANNLGAVIVI 383

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
           HDI+E KQ +                K +F++ VSHE+RTPLT+I G   ++ +   G  
Sbjct: 384 HDITELKQTE--------------KLKDEFVSTVSHELRTPLTSIRGSLGLLVSGIMGAF 429

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
              +  +  +  + + + +L ++ND+LDI KIE+GKM+   + V L++ V E+I + ++Y
Sbjct: 430 P-EKVKKLLDIANTNCDRLLLLINDILDIEKIEAGKMDFELKVVELNQVVKESIDINKMY 488

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738
           A +  + I  +  +    +  D   + Q+  N+LSNA  F+     + +S        V 
Sbjct: 489 AEKFGVNIDLAPNDEEYLVSVDSGRLMQVLANLLSNACKFSHENENVTVSVKQI-GSSVR 547

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           + + + GVG++     +  + F Q  +S      GTGLGL ++K +++   G  +  S P
Sbjct: 548 VSITNRGVGISPEFQSRIFQKFSQGDSSTTRGKGGTGLGLNISKTIIEKLGGALHFESKP 607

Query: 799 AKGTLIEIIFPLYDTSH 815
              T      PL    H
Sbjct: 608 NDLTTFYFDLPLVRQPH 624


>gi|254489912|ref|ZP_05103107.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Methylophaga thiooxidans DMS010]
 gi|224464997|gb|EEF81251.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Methylophaga thiooxydans DMS010]
          Length = 690

 Score =  279 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 74/247 (29%), Positives = 125/247 (50%), Gaps = 9/247 (3%)

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
             L    +IA++    K  FLA +SHEIR+PL  ++G + ++K            I+   
Sbjct: 305 EVLLSRNRIAKQTDIAKDAFLASMSHEIRSPLNGVVGMTSLLKETHL----TEEQIKMVK 360

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            ID S + +  I+ D+LD SKI + K+ L +  V L E     I +    A EK   IR 
Sbjct: 361 AIDTSTSHLSAIIGDILDFSKISANKIELDYHAVKLVELFQSCIDITLPQAEEKSQYIRL 420

Query: 689 SFANNIPRIL--ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILRVRD 743
           S + ++  +   AD   +KQI +N+LSNA+ FT   G I ++ +  +N++   + + V D
Sbjct: 421 SVSQSLKTVFFKADSTRLKQIVINLLSNAVKFTGMQGNIELAISADTNDQMPVLKIMVSD 480

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
            G+GM++ ++ +  + F Q   S   +  GTGLGL +++ + +   G   + S   KG+ 
Sbjct: 481 NGIGMSDDQIARLFERFSQADVSTTRKYGGTGLGLAISRNLAELMGGHITVTSKVDKGSR 540

Query: 804 IEIIFPL 810
             +  PL
Sbjct: 541 FIVTLPL 547


>gi|194292537|ref|YP_002008444.1| two-component sensor response receiver component, histidine kinase
           [Cupriavidus taiwanensis LMG 19424]
 gi|193226441|emb|CAQ72390.1| two-component sensor response receiver component, histidine kinase
           [Cupriavidus taiwanensis LMG 19424]
          Length = 1122

 Score =  279 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 110/693 (15%), Positives = 223/693 (32%), Gaps = 52/693 (7%)

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +  L   +     +   L A+P     R            + R    P A          
Sbjct: 79  EYRLVRSDRPATELEASLMAVPA-GSARAVDAPGLINAATLMRGAPVPGAERSAAVSHMI 137

Query: 206 HLHEIKKGHSSVEKEKYDIF--------SQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257
                ++ +     +             +  +P     +      + +  ++    L   
Sbjct: 138 RFAIFERAYWGAAPQGVRSVFLMADGSEALVTPALPAALPLSGPLVADAVSNWAKALARR 197

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
                 +  +  P     +     Q      F  ++N +     Y +             
Sbjct: 198 TREASATTPAGTPLWAGPYPDISGQEPMLSCFLPVRNATGALLGYAATAIPVRALMGGGG 257

Query: 318 GENLTPETVDKCP-IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
               TP           F    G L +       L  +   + +      S         
Sbjct: 258 VPGTTPAGEPVAGKRAIFFDERGKLLFQGRDAGWLLPHALSERVARELAGSEHGVGYWF- 316

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           +  ++    +        A +  L     +   +LA   + +           +      
Sbjct: 317 EQGSLMIGSIAPGQGWRAAYAYPLSQALADHGLALAAALLLYGLGIAAVLQGARMVRHRI 376

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGI-AIINREGIILSTNRAVSKLFGYPVEDILRK 495
            V  + N  ++E       ++++A   G+  +   +  + + N   ++            
Sbjct: 377 LVPMQRNAERIEDSERFNRTVMQAAPVGLRVVRTADAHVRAENALAAQ------------ 424

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE--KLLSLRIIIKKLPFSSC 553
               +L  +  +    +L  +L+      +             + + +     +      
Sbjct: 425 ----WLPLDARTQGRPWLDAMLAQRGETPVRLEVRVPAGAGAARDVLVVGRRTRFEGQDA 480

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
               +HD++E ++   +L+ A+++A++ S+ K  FLA +SHEIRTPL  ++G        
Sbjct: 481 LLCAIHDVTEEREAHRELARARQLADEASAAKLRFLATMSHEIRTPLYGMLGT----LEL 536

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
                      E  + I  S  ++L I++DLLD S+ E+G+M+L   P    + +   + 
Sbjct: 537 LSLTSLAHGQREMLSTIQASSQVLLQILDDLLDYSRAEAGRMHLDSVPFDPVDLLESTVR 596

Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
                A +K + +       +P +  D   V+QI  N+L NA+ FT SG  +I+      
Sbjct: 597 GHAPLALQKGLALSCYPEPGLPCLSGDPVRVRQIIGNLLGNALKFTASG-HVIVRLRRAP 655

Query: 734 NEE---------------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
             +               +++ V DTG G+     EK  +PF Q   S   R  GTGLGL
Sbjct: 656 ASDQPDVPRPADAAGTVALLIEVADTGPGIAPEVQEKLFEPFVQADPSTARRYGGTGLGL 715

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIE--IIFP 809
            + + +     G   + S P KG++    +  P
Sbjct: 716 SICRRLAALMDGSVSVHSEPGKGSVFRALLRLP 748


>gi|301307858|ref|ZP_07213814.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
 gi|300834201|gb|EFK64815.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
          Length = 767

 Score =  279 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 130/747 (17%), Positives = 257/747 (34%), Gaps = 53/747 (7%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           DAHG L+ I++   +  G             V +I+++  +  +   L  +    G+   
Sbjct: 46  DAHGVLRSINDHALRMYGVD-------DRTSVVNIVNLYKSPFVDSELLARIQ-SGEDIS 97

Query: 150 WPIEGTNLYVPID--------------LAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA 195
              E     V  D              +  +PI+SR +   G     I+  N + +    
Sbjct: 98  LEFEYDFDRVNKDAYYSSYNKDTMIYGVKVIPIWSRKKHLIGH----ILLANDMTSVKEV 153

Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK---VSSLTEYYAHKDD 252
             +  + K +    +K  + +      +             K      + L   +     
Sbjct: 154 EFRTEESKKNLEMAMKAANMASWVYDVNKKVFNPLYGLTVAKKNMPMEAVLDILHPQDRA 213

Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
            L      L+ +E         F+      Y   +    L    +   + +  +   +  
Sbjct: 214 PLIRLFSQLIGNEIEQGQMTLRFYNEQEEMYRYYESRMRLSTEHRGKLQIIGTQMDITER 273

Query: 313 AYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVD-DIEIAGGLSTLLD 371
               +         D       +      F  N            D   +    +S  +D
Sbjct: 274 LQMAKKAQDLIAKRDLAMKVSNIVHWD--FDVNSQKFESYNDPINDYVSDRLLTVSEYMD 331

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE-KANQFPENMPQ 430
                D +     M        +  +          E      F+      ++  + +  
Sbjct: 332 VIYPEDRSVFYDAMQSLIAGKNVTINFTCRIQTKYDETWQYCDFMGVPFDQDENGDIIRY 391

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPV 489
            G        +   R+++    ++    +         + +     + N  ++    Y  
Sbjct: 392 TGFRQNIPKIQQLNRELKERNYKIELSFKTVGMSYWDFDVKSLKFSAFNDPINDF--YSE 449

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK-EEKLLSLRIIIKKL 548
           + I  + +      +    +  Y+  +    + +         TK +++  +L +   ++
Sbjct: 450 KTITPEDYLNATHPDDVVFVRKYMEHMFR-GIDKDFNVKYRSKTKWDDEWQTLLVTGIQV 508

Query: 549 PFSS-----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
                     Y+    + ++W++   +L   K+ AE     KS FLA +SHEIRTPL AI
Sbjct: 509 ERDKEGHVTRYTGITINNTKWEKMIQQLKELKEKAELSDRLKSAFLANMSHEIRTPLNAI 568

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +GFSE++              EY N I  +  L+L ++ND+LD+SKIESG +    E  +
Sbjct: 569 VGFSELM----VTCDDPEEKKEYINIIQSNNELLLRLINDILDLSKIESGIIERRKENFN 624

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
           L +  +E    +Q       + +R    N+   +L D   +KQ+ +N L+NA+  T SG 
Sbjct: 625 LAKVCNELFVTIQAKMTNPNVELRLDGPNSECWVLLDRNRLKQVWMNFLTNAVKCTKSG- 683

Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
            I +         + + V DTG+G+ +   +K    F ++        +GTGLGL +++A
Sbjct: 684 YIKMGYGIERKG-LRIYVEDTGIGIPDDLHDKVFTRFEKL----NEFSQGTGLGLTISRA 738

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFPL 810
           +V+A  G+    S    G+      PL
Sbjct: 739 IVEAAGGEVGFTSKLGVGSTFWAWLPL 765



 Score = 51.2 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 30/314 (9%), Positives = 87/314 (27%), Gaps = 35/314 (11%)

Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY-ANPSFLLLTKY 354
            + S E         +S   +E    T       P+   +Y    +    N   L +   
Sbjct: 5   EENSQENDDVIIEKEISKLIEEQRLFTESIYACLPVGIEIYDAHGVLRSINDHALRMYGV 64

Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN-------- 406
                +     +  L  +P +        ++        I+        + N        
Sbjct: 65  DDRTSVVN---IVNLYKSPFV-----DSELLARIQSGEDISLEFEYDFDRVNKDAYYSSY 116

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
            ++++          ++    +    +  +    +  + + E     L   ++A +    
Sbjct: 117 NKDTMIYGVKVIPIWSRKKHLIGHILLANDMTSVKEVEFRTEESKKNLEMAMKAANMASW 176

Query: 467 IINREGIILSTNRAVSKLFGYP--VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
           + +    +   N     L+G     +++  +     L     + +    ++++  ++ Q 
Sbjct: 177 VYDVNKKV--FNP----LYGLTVAKKNMPMEAVLDILHPQDRAPLIRLFSQLIGNEIEQG 230

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEK 580
            +       ++E++        +L            T  DI+E  Q   K        + 
Sbjct: 231 -QMTLRFYNEQEEMYRYYESRMRLSTEHRGKLQIIGTQMDITERLQMAKKAQDLIAKRDL 289

Query: 581 ESSHKSDFLARVSH 594
                   ++ + H
Sbjct: 290 AMK-----VSNIVH 298


>gi|196228645|ref|ZP_03127511.1| multi-sensor signal transduction histidine kinase [Chthoniobacter
           flavus Ellin428]
 gi|196226926|gb|EDY21430.1| multi-sensor signal transduction histidine kinase [Chthoniobacter
           flavus Ellin428]
          Length = 891

 Score =  279 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 92/683 (13%), Positives = 202/683 (29%), Gaps = 71/683 (10%)

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244
              R       L +        + +  +    V      I             +      
Sbjct: 213 RELRARKTSTQLQQAARDYAESIVDTVREPLVVLDRDMRIERANRAYYGT-FGSNPEETE 271

Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ----------- 293
            +   +    +     L    + +L   + F  +            T+            
Sbjct: 272 HHLLVEVGSGQWNGPELGKLLQEALKFDKRFDDLEWEYQHADGSHRTMLLNGCKLSRPES 331

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP--IPFFVYSHGNLFYANPSFLLL 351
            +                       E      VD       F +   G +   +     +
Sbjct: 332 QSEAVLLAMEDITVRKKAEQELRTSEERYRTIVDSVTGYAIFMLDPDGKVANWSRGAERI 391

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411
             YKS + I      S    A  ++     + +   R              ++ +     
Sbjct: 392 KGYKSTEIIGR--HFSRFYPAEDVAAGKPERELTEAREKGR---VEDEGWRVRKDGTRFF 446

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471
           A   I     +   +      +  +  +       +E   +   ++ ++      ++  +
Sbjct: 447 ANAIISAV-RDANGQLKGFVKLVRDVTERHR----IEQMHVHFRALFDSLPGLYVVLTPD 501

Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV-------MNHYLTEILSLDLRQT 524
             I++ + A  K      E +L   F      N           +   L  +L     +T
Sbjct: 502 FGIVAVSDAFLKATMTEREGLLGHKFFDVFPDNPNDPNATGETNLRASLNRVLKSHRSET 561

Query: 525 LE-KITLGSTKEEKLLSLRIII------KKLPFSSCYSLTMHDISEWKQEKNKLSHAKK- 576
           +  +       +                            + D++++ ++K +     + 
Sbjct: 562 MAIQKYDIRRPDGTFEERYWSPVNSPVLGADRRIEYLIHRVEDVTDFVKQKREAGQNVEI 621

Query: 577 -----------------------IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
                                       +S    F   VSH++R PL  I GF++ +   
Sbjct: 622 KNRLDNMEAEVFRSSQRVQAANNQLRAANSELEAFSYSVSHDLRAPLRHIDGFAD-LLGN 680

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
             G   + +   Y   I  S   +  +++DLL  S+I  G+  +    V+L+  V E I 
Sbjct: 681 HAGSTLDDKGKRYLKTISDSAKRMGALIDDLLVFSRI--GRAEMKRTNVNLNALVDEVIQ 738

Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-T 732
            +++  + + ++ +      +P   AD   ++Q+ +N+L+NA+ +T      +I   +  
Sbjct: 739 ELRIETSARNVVWKRQ---ELPAADADPALLRQVLVNLLANAVKYTRPKDPAVIEVGYVK 795

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
             +E  L VRD GVG     + K    F ++   +    EGTG+GL   + ++  + G+ 
Sbjct: 796 KGDEDALYVRDNGVGFDMTYVGKLFGVFQRLH--RAEEFEGTGIGLANVQRIIVRHGGRV 853

Query: 793 YIFSTPAKGTLIEIIFPLYDTSH 815
           +  S   +G       P+   S+
Sbjct: 854 WAESQLGEGATFYFTLPIASGSN 876



 Score = 68.5 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 37/323 (11%), Positives = 90/323 (27%), Gaps = 17/323 (5%)

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
            + E  L  +     I   +  ++ +  T + +  E+FE      H SL        +  
Sbjct: 50  RTREVRLELERATVQIVDAETAERGFLLTGKADFLETFEPSLQAAHASLERLRTLTTDNP 109

Query: 323 PET--VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
            +   +D    P        +                  + + GG        ++ +   
Sbjct: 110 EQVKHLDHLQ-PLLEQ---RITRLRDQIKARESGGPDAAVGMVGGSEGRQLMQQVREEIR 165

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
                    D   I  + +    +W    +L    +           +       E    
Sbjct: 166 Q------MGDVEEILLAKQSEATRWASRTTLTAVVLGSAAMVVLM-LVSVITTRRELRAR 218

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           + + +  +       SI++   + + +++R+  I   NRA    FG   E+         
Sbjct: 219 KTSTQLQQAARDYAESIVDTVREPLVVLDRDMRIERANRAYYGTFGSNPEETEHHLLVEV 278

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII----IKKLPFSSCYSL 556
                       L +      ++  +        +    ++ +      +    S    L
Sbjct: 279 GSGQWNGPELGKLLQEALKFDKRFDDLEWEYQHADGSHRTMLLNGCKLSRPESQSEAVLL 338

Query: 557 TMHDISEWKQEKNKLSHAKKIAE 579
            M DI+  K+ + +L  +++   
Sbjct: 339 AMEDITVRKKAEQELRTSEERYR 361



 Score = 64.3 bits (155), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 41/404 (10%), Positives = 98/404 (24%), Gaps = 36/404 (8%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + +D  G +   S    +  G  + ++IG           +       +L + +     
Sbjct: 372 IFMLDPDGKVANWSRGAERIKGYKSTEIIGRHFSRFYPAEDVAAGKPERELTEAREKGRV 431

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +   W +         +     +   N +  GF    +V      +    +       F 
Sbjct: 432 EDEGWRVRKDGTRFFANAIISAVRDANGQLKGF--VKLVRDVTERHRIEQMHVHFRALFD 489

Query: 206 HLH----------------EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH 249
            L                 +     +  E+E           P        +  T   A 
Sbjct: 490 SLPGLYVVLTPDFGIVAVSDAFLKATMTEREGLLGHKFFDVFPDNPNDPNATGETNLRAS 549

Query: 250 KDDVLKTEKYPLLTS------EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303
            + VLK+ +   +              E+  +  +N       +    L +  ++  +++
Sbjct: 550 LNRVLKSHRSETMAIQKYDIRRPDGTFEERYWSPVNSPVLGADRRIEYLIHRVEDVTDFV 609

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYAN---PSFLLLTKYKSVDDI 360
             +     +       +     V +        ++  L  AN    +F     +     +
Sbjct: 610 KQKREAGQNVEIKNRLDNMEAEVFRSSQRVQAANN-QLRAANSELEAFSYSVSHDLRAPL 668

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVML------YRSDRTCIAASARLHTIQWNRENSLAMT 414
               G + LL     S  +      L       +     I        I         + 
Sbjct: 669 RHIDGFADLLGNHAGSTLDDKGKRYLKTISDSAKRMGALIDDLLVFSRIGRAEMKRTNVN 728

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458
                  ++  + +         V  R      + +   L  +L
Sbjct: 729 LNALV--DEVIQELRIETSARNVVWKRQELPAADADPALLRQVL 770



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 41/434 (9%), Positives = 118/434 (27%), Gaps = 30/434 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTWYGK 146
           +D    ++  +     T G+   +     L +V       P     + + LK    +   
Sbjct: 246 LDRDMRIERANRAYYGTFGSNPEETEHHLLVEVGSGQWNGPELGKLLQEALKFDKRFDDL 305

Query: 147 TTLW-PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
              +   +G+  +  + L    +     +         +    V        +  ++++ 
Sbjct: 306 EWEYQHADGS--HRTMLLNGCKLSRPESQSEAV--LLAMEDITVRKKAEQELRTSEERYR 361

Query: 206 HLHEIKKGHSS--VEKEKYDIFSQQSPPPHLRMKNKVS---SLTEYYAHKDDVLKTEKYP 260
            + +   G++   ++ +       +        K+        + +Y  +D      +  
Sbjct: 362 TIVDSVTGYAIFMLDPDGKVANWSRGAERIKGYKSTEIIGRHFSRFYPAEDVAAGKPERE 421

Query: 261 LLTSEESSLPEQEDFH-TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
           L  + E    E E +    +  ++        +++ + +   ++      +     ++  
Sbjct: 422 LTEAREKGRVEDEGWRVRKDGTRFFANAIISAVRDANGQLKGFVKLVRDVTERHRIEQMH 481

Query: 320 NLTPETVDKCP-IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
                  D  P +   +     +   + +FL  T  +    +          D P   + 
Sbjct: 482 VHFRALFDSLPGLYVVLTPDFGIVAVSDAFLKATMTEREGLLGHKF-FDVFPDNPNDPNA 540

Query: 379 NAIKPVM----LYRSDRTCIAASARLHTIQWNRENSLAMTFIPF--EKANQFPENMPQNG 432
                +                + + + I+          + P                 
Sbjct: 541 TGETNLRASLNRVLKSHRSETMAIQKYDIRRPDGTFEERYWSPVNSPVLGADRRIEYLIH 600

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN---RAV---SKLFG 486
              +  D    KR+   + +++ + L+     +        + + N   RA     + F 
Sbjct: 601 RVEDVTDFVKQKREA-GQNVEIKNRLDNMEAEV--FRSSQRVQAANNQLRAANSELEAFS 657

Query: 487 YPVEDILRKPFTVF 500
           Y V   LR P    
Sbjct: 658 YSVSHDLRAPLRHI 671


>gi|161618989|ref|YP_001592876.1| PAS domain-containing protein [Brucella canis ATCC 23365]
 gi|161335800|gb|ABX62105.1| PAS domain S-box [Brucella canis ATCC 23365]
          Length = 898

 Score =  279 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 102/627 (16%), Positives = 212/627 (33%), Gaps = 53/627 (8%)

Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271
           +G      + Y   +  +    +R  ++V +     +     L       L+++E     
Sbjct: 145 RGQIVYANQAYARMTGATDADGIRPLDQVLASEPAASDAIYRLTNAVRDGLSAQEEVRIS 204

Query: 272 QEDFHTINLNQY--TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE-----NLTPE 324
                  N +      +     L+  ++     ++ +         ++            
Sbjct: 205 GGLSRGANGSLAPVWYRIKARALEGGAEFKGPLVAWQVADISEERAEQERFFQELQEAIN 264

Query: 325 TVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
            +D  P  FF     G + Y N +               +  L+ ++    ++       
Sbjct: 265 HLDHAPAGFFSANPAGRIIYLNATLAEWLGVDLTQFTPGSLTLNDIVAGSGMA------L 318

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
           +   +++      +     +      SLA+ F    +  +         I  +  +   +
Sbjct: 319 IKAVKAEPGTSRNTVIDLDLIKRNGQSLAVRFYHRVQTARDGMPGTTRTIVLDRAEGDDS 378

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF-GYPVEDILRKP--FTVF 500
                   ++      +    IA ++ EG  L TN     +F G    D + +       
Sbjct: 379 SVAQRSAEVRFTRFFNSAPMAIAAVDAEGHTLRTNARFLDIFSGVVDRDAIDRRVKLENV 438

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF----SSCYSL 556
           + +      N  LT   +          T+    EE+ +   +                +
Sbjct: 439 VHERDRETFNKALTAAFA-GQASISPVDTVLPGNEERHIRFYMSPVTDLGGEAAEEAAVI 497

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
           +  + +E K  +N+++ ++K+              ++H+    LTAII  S+++      
Sbjct: 498 SAVETTEQKALENQMAQSQKM-----QAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNH-- 550

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
              +P + +  N I ++ N    +V  LL  S+    +  L  E + L + +++ + ++ 
Sbjct: 551 RASDPSFPDIMN-IKQNANRAASLVRQLLAFSR----RQTLRPEVLDLTDVLAD-LRMLL 604

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT------ 730
                K I ++     ++  + ADL   +Q+A+N+  NA    P GGQI + T       
Sbjct: 605 ARLVGKDIELKIDHGRDLWPVKADLGQFEQVAVNLAVNARDAMPEGGQITLRTRNIPAAD 664

Query: 731 --------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
                       + V+  V DTG G+    LEK  +PF          G+GTGLGL +  
Sbjct: 665 AAKLHYRDLPEADYVVFEVEDTGTGIPADVLEKIFEPFFTTK----EVGKGTGLGLSMVY 720

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFP 809
            ++    G  Y  S   KGT  +I  P
Sbjct: 721 GIIKQTGGFIYCDSEVGKGTTFKIFLP 747



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/238 (11%), Positives = 66/238 (27%), Gaps = 7/238 (2%)

Query: 319 ENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
           ++L    +D  P    +    G + YAN ++  +T     D I     +  L   P  SD
Sbjct: 125 QDLAHSFMDTQPEGTVISDPRGQIVYANQAYARMTGATDADGIRPLDQV--LASEPAASD 182

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
                   +                 +    +   + +    +A +         +  + 
Sbjct: 183 AIYRLTNAVRDGLSAQEEVRISGGLSRGANGSLAPVWYRIKARALEGGAEFKGPLVAWQV 242

Query: 438 VDTRINKRKMEIEVMQLC-SI--LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
            D    + + E    +L  +I  L+    G    N  G I+  N  +++  G  +     
Sbjct: 243 ADISEERAEQERFFQELQEAINHLDHAPAGFFSANPAGRIIYLNATLAEWLGVDLTQFTP 302

Query: 495 KPFT-VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
              T   +   +   +   +           ++   +    +   +     ++     
Sbjct: 303 GSLTLNDIVAGSGMALIKAVKAEPGTSRNTVIDLDLIKRNGQSLAVRFYHRVQTARDG 360



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 48/420 (11%), Positives = 102/420 (24%), Gaps = 38/420 (9%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD--ILHIDPNNHIGDLLKRQNTWYGKT 147
           D  G +   ++   +  G      I   L  V        D    + + ++   +   + 
Sbjct: 143 DPRGQIVYANQAYARMTGATDADGI-RPLDQVLASEPAASDAIYRLTNAVRDGLSAQEEV 201

Query: 148 TL-----WPIEGTNLYVPIDLAALPIYSRNREFSG-FRGFGIVHVNRVDNDPRALGKRLD 201
            +         G+   V   + A  +     EF G    + +  ++    +     + L 
Sbjct: 202 RISGGLSRGANGSLAPVWYRIKARALEGGA-EFKGPLVAWQVADISEERAEQERFFQELQ 260

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR------MKNKVSSLTEYYAHKDDVLK 255
           +  +HL     G  S       I+   +    L           ++           ++K
Sbjct: 261 EAINHLDHAPAGFFSANPAGRIIYLNATLAEWLGVDLTQFTPGSLTLNDIVAGSGMALIK 320

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN--NSKESFEYLSHRNHPSLSA 313
             K    TS  + +                     T ++          L        S 
Sbjct: 321 AVKAEPGTSRNTVIDLDLIKRNGQSLAVRFYHRVQTARDGMPGTTRTIVLDRAEGDDSSV 380

Query: 314 YFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLT-KYKSVDDIEIAGGLSTLLD 371
                E       +  P+    V + G+    N  FL +       D I+    L  ++ 
Sbjct: 381 AQRSAEVRFTRFFNSAPMAIAAVDAEGHTLRTNARFLDIFSGVVDRDAIDRRVKLENVVH 440

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
                  N            +       L     N E  +     P              
Sbjct: 441 ERDRETFNKALTAAFAGQA-SISPVDTVL---PGNEERHIRFYMSPVTDLGGEAAEEAAV 496

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSI----------LEATSDGIAIINREGIILSTNRAV 481
               E  + +  + +M  +  ++ ++                 I + +    +L TN   
Sbjct: 497 ISAVETTEQKALENQM-AQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSD---LLLTNHRA 552



 Score = 48.5 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 45/134 (33%), Gaps = 12/134 (8%)

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY-LT 514
           S ++   +G  I +  G I+  N+A +++ G    D   +P    L     +    Y LT
Sbjct: 130 SFMDTQPEGTVISDPRGQIVYANQAYARMTGATDAD-GIRPLDQVLASEPAASDAIYRLT 188

Query: 515 EILSLDLRQTLEKITLG---STKEEKLLSLRIIIKKLPFSSC-------YSLTMHDISEW 564
             +   L    E    G         L  +   IK               +  + DISE 
Sbjct: 189 NAVRDGLSAQEEVRISGGLSRGANGSLAPVWYRIKARALEGGAEFKGPLVAWQVADISEE 248

Query: 565 KQEKNKLSHAKKIA 578
           + E+ +     + A
Sbjct: 249 RAEQERFFQELQEA 262


>gi|332535352|ref|ZP_08411148.1| putative sensor protein [Pseudoalteromonas haloplanktis ANT/505]
 gi|332035225|gb|EGI71733.1| putative sensor protein [Pseudoalteromonas haloplanktis ANT/505]
          Length = 1104

 Score =  279 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 66/249 (26%), Positives = 119/249 (47%), Gaps = 9/249 (3%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  + + KL  AK+ AE+    KS+FLA +SHEIRTP+  ++G   +IK  +     + +
Sbjct: 570 QRIETEQKLVSAKETAEQAVEAKSEFLASMSHEIRTPMNGVLGMLNIIKQTQL----DLQ 625

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
              +      S   +L+I+ND+LD SKIE+GK+++     +L   + E +    L   + 
Sbjct: 626 QKHHIELAQSSAQSLLNIINDILDFSKIEAGKLDIENVQFNLPRLLGEVVESFALKVEQN 685

Query: 683 RILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH---TSNEEVI 738
              +        +  I++D   ++QI  N++ NA+ FT   G+++I+      T    + 
Sbjct: 686 NTKLILDATQITVSEIISDPNRLRQILNNLIGNAVKFT-IDGEVVITARIDETTDGSFLQ 744

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
             + DTG+G+   +       F Q   S   +  GTGLGL + K + +   G+  + S  
Sbjct: 745 CSIIDTGIGIDPKKQASLFDSFTQADASTTRQFGGTGLGLAIVKQLCELMNGEVSVNSMQ 804

Query: 799 AKGTLIEII 807
            +G+     
Sbjct: 805 GEGSTFSFT 813



 Score = 39.6 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 44/130 (33%), Gaps = 11/130 (8%)

Query: 450 EVMQLCSILEATSD----GIAIINREGIILSTNRAVSKLFGYP--VEDILRKPFTVFLEQ 503
              Q   +LEA SD    G    N E   +  +    KLF YP   +    K    F + 
Sbjct: 273 RQQQNEKMLEAMSDLAQIGAWSFNLETKQVYWSDMTKKLFKYPLNSQPEWPKDLNYFKKG 332

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHD 560
            +   +   +   +       +E   +   +E + + + +  +    +        ++ +
Sbjct: 333 TSRETIKPLIERAIKYGESYEVELEVM--DEEGESVWVLVHGEAERKNGRCTRIFGSLQN 390

Query: 561 ISEWKQEKNK 570
           I   K+ + +
Sbjct: 391 IDTRKKIELE 400


>gi|298247501|ref|ZP_06971306.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297550160|gb|EFH84026.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 509

 Score =  279 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 92/519 (17%), Positives = 188/519 (36%), Gaps = 59/519 (11%)

Query: 316 DEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
              E+     +        +    G +     ++L +T       I +        D   
Sbjct: 27  QTQEDYLHTILRHVQGYLVILDVEGVIIDVIETWLPITALPKEKQIGVPLWQVGWWDELP 86

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
                    +         I  SAR HT++         ++I     ++           
Sbjct: 87  HEQEQIKGEIARAAK-GHPIRGSARYHTVE---GEERCSSYIFNPIIDEQGMVTCIVHQA 142

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
            +  + +  +        +L  I E + D I++I+ EG  +  N A  KL GY  ED++ 
Sbjct: 143 FDITEQKRKE-------EELRHIFEMSLDIISVIDMEGRYIQVNPAFEKLLGYKPEDVIG 195

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554
           +    ++  +   +    +  +   +  Q         TK+     +    +        
Sbjct: 196 RDSLDYVHPDDVKIKLTEMKRLQRGEAIQ--AAENRYRTKDGTYRWIAWSARPNLDEGVI 253

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ- 613
            +  H I E K ++                +  FL+  SHE+RTPLT I    ++++ + 
Sbjct: 254 YIVAHGIDEQKAQE--------------QLRDTFLSMASHELRTPLTGISTSLQMMRKRL 299

Query: 614 -RFGPLGNPRYIEYANYIDRSGNLVL-------DIVNDLLDISKIESGKMNLHFEPVSLD 665
               P    ++IE  + + ++             I+ND++D +++  G++ ++  P+ L 
Sbjct: 300 KLLTPEQPEKFIETTDRLQKNLERAEQQVTAECRIINDIVDANRMAQGRLAINPLPIDLI 359

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725
             + + I   Q+   E+R  +       IP ++ D   + Q+  NIL+NAI ++P    I
Sbjct: 360 CIMRQVIGDAQITNPERRFELTVPAEPYIP-VIVDAMRISQVLDNILTNAIKYSPDDKPI 418

Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ------------QIRGEG 773
            I+    +   V + V D G+G+T  E ++  + F Q+P  +                  
Sbjct: 419 KINVEVNAK-HVKVAVHDEGLGLTPEEQKRVWERFYQVPGRRIQGGPGGSMGLGLGLY-- 475

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
                 + + ++  + GK  + S P +G+    I PL  
Sbjct: 476 ------ICQTIISLHGGKIGVESEPDQGSTFYFILPLNQ 508



 Score = 61.2 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 67/243 (27%), Gaps = 18/243 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTW-YGKT 147
           ID  G   +++    K +G     +IG    D      +         L+R       + 
Sbjct: 169 IDMEGRYIQVNPAFEKLLGYKPEDVIGRDSLDYVHPDDVKIKLTEMKRLQRGEAIQAAEN 228

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                +GT  Y  I  +A P              G++++     D +   ++L   F  +
Sbjct: 229 RYRTKDGT--YRWIAWSARPNLDE----------GVIYIVAHGIDEQKAQEQLRDTFLSM 276

Query: 208 HEI-KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
                +   +       +  ++          K    T+      +  + +    +T+E 
Sbjct: 277 ASHELRTPLTGISTSLQMMRKRLKLLTPEQPEKFIETTDRLQKNLERAEQQ----VTAEC 332

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
             + +  D + +   +         L    ++        N           E   P  V
Sbjct: 333 RIINDIVDANRMAQGRLAINPLPIDLICIMRQVIGDAQITNPERRFELTVPAEPYIPVIV 392

Query: 327 DKC 329
           D  
Sbjct: 393 DAM 395


>gi|188588291|ref|YP_001921255.1| Two component system histidine kinase [Clostridium botulinum E3
           str. Alaska E43]
 gi|188498572|gb|ACD51708.1| Two component system histidine kinase [Clostridium botulinum E3
           str. Alaska E43]
          Length = 681

 Score =  279 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 92/245 (37%), Positives = 140/245 (57%), Gaps = 2/245 (0%)

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           K     L  A K  ++    KS FLA +SHE+RTPL+AII  SE++K + FG L N + +
Sbjct: 424 KLRTEDLREAIKGLKEADKIKSLFLANMSHELRTPLSAIITCSEILKEEIFGEL-NSKQL 482

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           ++   I  SGN +L ++N++LDISKIE+GKM L     S+ +   E+ S+++  A  K I
Sbjct: 483 KHITNILNSGNHLLHLINNVLDISKIEAGKMKLTIGEYSISDIAMESFSVLKSLAYRKNI 542

Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744
            I  +   +   I  D   +KQI  N++SN+I FT  GG+I I+ T      + L + D 
Sbjct: 543 EINLNIEPSDFIIKIDANKLKQILYNLISNSIKFTEEGGKIQINITKN-LAYMKLIIEDN 601

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G+   + ++    F Q+ NS + + EGTGLGLPL K +V+ + G+ ++ S    GT I
Sbjct: 602 GIGIKKEDQKRIFNEFEQVDNSYERKYEGTGLGLPLTKKLVEMHGGEIFLISNIGTGTKI 661

Query: 805 EIIFP 809
            I  P
Sbjct: 662 IITIP 666


>gi|99078583|ref|YP_611841.1| periplasmic sensor hybrid histidine kinase [Ruegeria sp. TM1040]
 gi|99035721|gb|ABF62579.1| two-component hybrid sensor and regulator [Ruegeria sp. TM1040]
          Length = 770

 Score =  279 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 81/267 (30%), Positives = 137/267 (51%), Gaps = 12/267 (4%)

Query: 555 SLTMHD-ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
              + D  +E  + +  L HA++ AE  S  KS+FLA +SHEIRTP+  +IG +EV++  
Sbjct: 217 VGVLEDSFAERDEREKALEHAREQAEIASRAKSEFLANMSHEIRTPMNGVIGMAEVLRET 276

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
              P        Y   I +SGN +L I+ND+L  SKIE+GK+ L     +L   + + I 
Sbjct: 277 ELTP----DQELYTETIVKSGNALLSIINDILSFSKIEAGKLELTQATFNLRTVIEDVIM 332

Query: 674 LVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
           L+   A EK + +   +  ++      D   ++QI  N++ NA+ FT  G  + I  T  
Sbjct: 333 LLAPKAAEKWVQLTLRYDPDLAEFYDGDAGRIRQIVTNVVGNAVKFTSRGS-VHIDVTGV 391

Query: 733 SNEEV---ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
           +  ++    + V DTG+G+   +L++    F Q+  +     EGTGLGL ++  ++    
Sbjct: 392 ARGQLMDLRISVVDTGIGIPAEKLDRIFHAFEQVDGAATRNFEGTGLGLAISTRLLQMMK 451

Query: 790 GKFYIFSTPAKGTLIE--IIFPLYDTS 814
           G+ ++ S+  KG++    I  P  D +
Sbjct: 452 GRIHVTSSEGKGSVFTIDISLPTSDRA 478


>gi|300691228|ref|YP_003752223.1| sensor histidine kinase in two-component regulatory system with
           phoB [Ralstonia solanacearum PSI07]
 gi|299078288|emb|CBJ50936.1| sensor histidine kinase in two-component regulatory system with
           phoB [Ralstonia solanacearum PSI07]
          Length = 443

 Score =  279 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 75/404 (18%), Positives = 160/404 (39%), Gaps = 35/404 (8%)

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDT-----RINKRKMEIEVMQLCSILEATSDGI 465
                +      + P  +   G     +       R    ++E +  +    ++A+ +G+
Sbjct: 52  RLWRVLESPAYGEIPSALGLWGEVYYRLHRLMKGWRTQVLQVEQQHSRFIQAIQASPNGV 111

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
            +++ E  I   N    + FG   +  LR+  T  + +        ++  +   +  + L
Sbjct: 112 LMLDGEDQIEWCNAVAEEHFGLSAKRDLRQRITHLIRRP------EFVRYLARGEFEEPL 165

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
               +G  K+  +++ +++           L   DI++ +  +              + +
Sbjct: 166 TMRDMGPHKQ-SIVAAQVLPY---GEDRKLLVSQDITKLENTE--------------AMR 207

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
            DF+A VSHE++TPLT + GF E +++    PL       Y + +      +  +V DLL
Sbjct: 208 RDFVANVSHELKTPLTVLSGFLETVRD---LPLSEDDKRRYLDMMHVQATRMQHLVEDLL 264

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
            ++ +E         PV +   + +     +  +  +   I  +   ++  +      + 
Sbjct: 265 ALATLEGNSEPPSVTPVPMQRVMLQLQHDAEALSAGRH-AISMTCDPSV-SVCGAELELL 322

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
               N++SNAI +TP GG+I +  T       +  V DTG+G+    + +  + F ++  
Sbjct: 323 SAFSNLVSNAIRYTPEGGRISLGWTARD-GHAVFAVTDTGIGIAPEHIPRLTERFYRVDR 381

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           S+     GTGLGL + K ++  +     + S   KG+     FP
Sbjct: 382 SRSRDTGGTGLGLAIVKHVLSRHGADLQVSSERGKGSTFRASFP 425


>gi|291515872|emb|CBK65082.1| Signal transduction histidine kinase [Alistipes shahii WAL 8301]
          Length = 623

 Score =  279 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 99/573 (17%), Positives = 208/573 (36%), Gaps = 56/573 (9%)

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
             + +  L  +      N      +  FGT++  ++ + E     +            + 
Sbjct: 85  TANGDRCLQVRAVA-AANDPLTGVRSVFGTVRRVTEGTPENAELASINQSYKATQRNYSH 143

Query: 322 TPETVDKCPIP-----FFVYSHGNLF-----YANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
             + ++  PI            G        Y N     +    +    +   G +    
Sbjct: 144 LAQLIEHLPIGYLRVNILRDKSGEAVDYLLSYINQQAGRILGIHT----QGHAGKTAREV 199

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
                 +      +          +         + + +           ++        
Sbjct: 200 GIDPLKHIPTFEHI-------PSCSFWEQTGKSPDGKRTCRFLIYNTPGDDEL------V 246

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR---EGIILSTNRAVSKLFGYP 488
            +  +  D   ++ +++        + +    G    N    EG    T    +K +G  
Sbjct: 247 ILLEDITDATRSREQLDDFEHLFNLVSDFAHVGCVSYNPLTGEG---YTKGPWAKNYGEA 303

Query: 489 VEDILRKPFTVF--LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE-KLLSLRIII 545
                 +    +  +  +    +      + + ++R  + ++ + S +E  + + + ++ 
Sbjct: 304 ENTPASQILGHWRQVHPDDRQHLEEEFERLKTGEIRTFVNEVRIVSDQEPMRWIKIHLLC 363

Query: 546 KKLPFSSCYS---LTMHDISEWKQEKNK-LSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
           +               +DISE K+ + + L  AKK AE+ +  KS FLA +SHEIRTPL 
Sbjct: 364 RDYRPEEGVIDLACVNYDISELKRTEEEELREAKKRAEESNKLKSAFLANMSHEIRTPLN 423

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           AI+GFSE++ ++      +    EY + I R+  L+L I++D+LD+++IESG+ ++    
Sbjct: 424 AIVGFSELLADESR----HETRREYTDIILRNNTLLLQIISDVLDLARIESGRTDIERTQ 479

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS--VKQIALNILSNAIHFT 719
               +   E    ++L      + +R      +P          + Q+  N   NA+ FT
Sbjct: 480 FDARDLCREVADSLRLQ-RRPGVELRVE--EGLPEFPVTEYRKGLAQVLNNFTRNALKFT 536

Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
             G  + I         +   VRDTG+G+   + E+  + F ++        +GTGLGL 
Sbjct: 537 EKGS-VTIGFRRIP-GHIRFYVRDTGIGIAPEDRERIFERFVKLDTFT----QGTGLGLS 590

Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
           + K++ +   G   + S   +G+   I  P  +
Sbjct: 591 ICKSIAEQLGGSVGVDSVAGEGSCFRIDIPAGE 623



 Score = 38.9 bits (89), Expect = 3.3,   Method: Composition-based stats.
 Identities = 23/195 (11%), Positives = 64/195 (32%), Gaps = 15/195 (7%)

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
           +     L   L+A+  G   ++     ++ +R  + LFG     I  +   +   +   +
Sbjct: 5   QAAPDLLQKSLDASGVGWWQLDFGQREMTCSRLAADLFGADRTRISFEEVYLLPGEEHRA 64

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEE--KLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
            +    T   +L +  +L++  + +  +   ++ ++      L        T+  ++E  
Sbjct: 65  RIY---TRCAALKVSDSLDETFVTANGDRCLQVRAVAAANDPLTGVRSVFGTVRRVTEGT 121

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
            E  +L+   +  +    + S     + H               ++              
Sbjct: 122 PENAELASINQSYKATQRNYSHLAQLIEH----------LPIGYLRVNILRDKSGEAVDY 171

Query: 626 YANYIDRSGNLVLDI 640
             +YI++    +L I
Sbjct: 172 LLSYINQQAGRILGI 186


>gi|29347984|ref|NP_811487.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|29339886|gb|AAO77681.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 419

 Score =  279 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 93/382 (24%), Positives = 161/382 (42%), Gaps = 32/382 (8%)

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
           E  +L SIL+  +    +I+R+ I+ +TN     L          K     L      V 
Sbjct: 38  ESKELTSILQNINVYYLLIDRDLIVHNTN--YYTLNHLTPAQGEEKRVGDLLHCRNAIVA 95

Query: 510 NH---------------YLTEILSLDLRQTLEKITLGSTKEEKL-----LSLRIIIKKLP 549
                                       + L+      +++EK      +S+     K+ 
Sbjct: 96  GECGKHEQCKLCCIRTSISKAFYEKRSFKKLDASMQLLSEDEKTVIPCDVSVSGTYLKIN 155

Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                 LT++D++E +  +  L   ++ A      KS F+A +SHE+RTPL AIIGFS +
Sbjct: 156 GEERMVLTVYDVTELRNMQRLLDVERENAISADKLKSAFIANMSHEVRTPLNAIIGFSGL 215

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           +               Y + I  +   +L +VND+ D+S+I++G +N  +     ++ + 
Sbjct: 216 MA----TATSEEEKKMYTDIISENNERLLRLVNDIFDLSQIDAGVLNFVYSEFDANDLLR 271

Query: 670 EAISLVQLYANEKR-ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
           E   L  +  NE   + +          + ++ + + Q+  N+L NA+ FT +G +I   
Sbjct: 272 ELEGLFGMRLNENPLVTLVCEAHLEPIMMHSEKQRIIQVLTNLLHNAMKFTKTG-EIRFG 330

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                 +EV   V DTG+G+   E EK    F ++        +GTGLGL L++ +V   
Sbjct: 331 CRMEGTDEVYFYVSDTGIGIPKEEQEKIFSRFTKLD----REMQGTGLGLTLSQTIVHNL 386

Query: 789 MGKFYIFSTPAKGTLIEIIFPL 810
            G+F + S   KG+    I PL
Sbjct: 387 GGRFGVESEVGKGSTFLFILPL 408


>gi|251772640|gb|EES53205.1| Multi-sensor signal transduction histidine kinase [Leptospirillum
           ferrodiazotrophum]
          Length = 546

 Score =  279 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 78/538 (14%), Positives = 191/538 (35%), Gaps = 13/538 (2%)

Query: 274 DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF 333
             H +   +  +K      + + ++++  ++  +  ++S+      +  PE VD+     
Sbjct: 5   ASHELKARRMAEKLQLSPEEIDRRKAYLGIAPDDARAVSSLESYVRDRAPEFVDRLHERI 64

Query: 334 FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393
            ++                K +  +       +S + D   + +  A+            
Sbjct: 65  LLFPDAAAILEKAHAQSWLKARHAEYFVEL--VSGVYDMDYVLNRLAVGITHQEIGLGPE 122

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
              ++    ++W  + S      P  K     E + +  +    +           +   
Sbjct: 123 WVQASFGLFLEWILQCSRQDPSSPLAKNPVLMEVLSKLTLFDSGLVMDSYFMAEREKAEV 182

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
           L  + +  ++ + I++ +G I   NR    L GY  E+I+ +P   F   +         
Sbjct: 183 LSRVFDTNAEVVWILDGQGRIRHANRTTRTLTGYSPEEIVARPVPEFFLPSEDRPSPRLA 242

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKL 571
               S       +   +   K+   +++   +  L         L   D +  K+ +  L
Sbjct: 243 DLEESAAREGHWQGELVVRRKDGSGVTVWATLNLLGEEKGQGTILEFRDRTAEKKTEQDL 302

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
                   + +     F    SH+++ PL  +  +++++  +  G L      E+  +  
Sbjct: 303 VAKTADLVRSNRDLEQFAYVASHDLQEPLRMVTSYTQLLARRYKGQLSAE-ADEFIGFAV 361

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
                +  ++N LL  S+++S    L      ++  +  A+  ++L   E    I     
Sbjct: 362 DGAVRMQALINALLAYSRVDSRGKPL--VVCDMNAVLDHALDNLRLALEESGASIVR--- 416

Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV-ILRVRDTGVGMTN 750
            ++PR++ D   + Q+  N++ NA+ F       ++        ++  + V D G+G+ +
Sbjct: 417 GDLPRVMGDPVQLMQLLQNLVGNAVKFRAKDRPPVVEIAAQKEGDLWRIHVSDNGIGIDS 476

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
              ++    F ++    +    GTG+GL + K +V+ + G   + ST   G+      
Sbjct: 477 QYFDRIFVIFQRLH--TKEEYPGTGIGLAMCKRIVERHGGTIDVSSTFGSGSTFTFTL 532



 Score = 65.4 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 17/139 (12%), Positives = 39/139 (28%), Gaps = 9/139 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK---RQNT 142
            W +D  G ++  +       G    +++   + +        P+  + DL +   R+  
Sbjct: 194 VWILDGQGRIRHANRTTRTLTGYSPEEIVARPVPEFFLPSEDRPSPRLADLEESAAREGH 253

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
           W G+  +   +G+ + V   L  L       E  G            +            
Sbjct: 254 WQGELVVRRKDGSGVTVWATLNLL------GEEKGQGTILEFRDRTAEKKTEQDLVAKTA 307

Query: 203 KFSHLHEIKKGHSSVEKEK 221
                +   +  + V    
Sbjct: 308 DLVRSNRDLEQFAYVASHD 326


>gi|17987640|ref|NP_540274.1| histidine protein kinase DIVJ [Brucella melitensis bv. 1 str. 16M]
 gi|17983351|gb|AAL52538.1| histidine protein kinase divj [Brucella melitensis bv. 1 str. 16M]
          Length = 435

 Score =  279 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 92/349 (26%), Positives = 168/349 (48%), Gaps = 4/349 (1%)

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
             ++ EGI+ S +   +KL G   + +        +           L ++ +    + +
Sbjct: 37  FGLDIEGIVSSVDGETAKLLGVQPKMLEGTALIDRVHVADRVQYLSLLADLRAGMATRKV 96

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
           +            +      +        +L    +   ++  ++++  K   E E   K
Sbjct: 97  DVRLRSIE-NGNPVFRAYRFEGAGSDRAITLIGRSLEGEQKLLDEIAMLKAELESERIGK 155

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
              LA VSHE+RTPL +IIGFS+++ ++  G L + R  EYA  I +SG+ +L++VN +L
Sbjct: 156 GRLLATVSHELRTPLNSIIGFSDMLTHEIGGKLASDRQREYAGLIHQSGHYLLELVNAVL 215

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
           D S++E+G  ++  +     +AV    +++   A +K +       N +  ++AD R+V+
Sbjct: 216 DNSRLETGTYSIAPQSFVFRDAVEMCTAVMLPQAEKKGVDFCHRVGNGVGELVADRRAVQ 275

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNE---EVILRVRDTGVGMTNYELEKAMKPFGQ 762
           QI LN+ +NA+ FT SGG + I       +    +   V DTG+G+   +L++   PF +
Sbjct: 276 QILLNLATNAVKFTQSGGCVTIDAARVMADGCPMLEFSVSDTGIGIEPEDLQRIGTPFVR 335

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
             NS     EG+GLGL + K +V+ + G   + S P +GT++ I  PL 
Sbjct: 336 AGNSYTQAQEGSGLGLSVVKGLVERHQGSMQLKSRPGEGTVVMIRLPLA 384


>gi|313617213|gb|EFR89705.1| alkaline phosphatase synthesis sensor protein PhoR [Listeria
           innocua FSL S4-378]
          Length = 254

 Score =  279 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 68/259 (26%), Positives = 129/259 (49%), Gaps = 20/259 (7%)

Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
              L +HDI++ +  +N               +S+F+  VSHE++TP+TA+ GF+E + +
Sbjct: 11  GIILLLHDITQIRHLENV--------------RSEFVTNVSHELKTPVTALKGFAETLLD 56

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
                       ++   I    + +  ++ D+L +S+IE   +  + EPV +DE + ++ 
Sbjct: 57  GAM--YDEMLLKKFLTIIKEESDRLHRLIMDILALSRIEQNPVAENIEPVDVDEVIEQSS 114

Query: 673 SLVQLYANEKRILIRTSFANNIPRILA--DLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
             +   A EK I +       IP I+   D   ++QI +N+LSNAI++TP  G++ +   
Sbjct: 115 RTIFEMATEKNIQVSV-PEKTIPPIIIETDRDKLQQILINLLSNAINYTPVDGKVEVKL- 172

Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
                EVI+ V D G+G+   ++++  + F ++  ++     GTGLGL + K +V+   G
Sbjct: 173 INQEAEVIIEVTDNGIGIPAKDIDRVFERFYRVDKARSRHSGGTGLGLSIVKHLVENCGG 232

Query: 791 KFYIFSTPAKGTLIEIIFP 809
           +  + S    G+   +  P
Sbjct: 233 RIEVESQEEVGSTFRVTLP 251


>gi|153868974|ref|ZP_01998688.1| two-component system sensory histidine kinase [Beggiatoa sp. PS]
 gi|152074468|gb|EDN71320.1| two-component system sensory histidine kinase [Beggiatoa sp. PS]
          Length = 324

 Score =  279 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 74/244 (30%), Positives = 126/244 (51%), Gaps = 5/244 (2%)

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
            +   A+  AE+ +  KS F+A ++HE+RTPL AIIG+SE+++ +           +   
Sbjct: 68  EESQKARVQAEEANKAKSIFVANMTHELRTPLNAIIGYSEMLQEEAEDTGQKDLVPD-LE 126

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I  +G  +L ++ND+LD SK+E+GKM L+ E   ++  + + I  ++    +    +  
Sbjct: 127 KIASAGKHLLALINDVLDFSKVEAGKMGLYLEEFEINTMLQDVIGTIKQVIEKNNNHLIV 186

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST---THTSNEEVILRVRDTG 745
           ++  N+  + +D+  V+Q   N+LSNA  FT +G  I +     +    + + L+V DTG
Sbjct: 187 NYPKNLGIMQSDVTKVRQCLFNLLSNANKFTETG-TITLQANRYSQKGEDWISLKVSDTG 245

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +GMT  ++EK    F Q   S   +  GTGLGL + K       G+  + S   KG+   
Sbjct: 246 IGMTADQIEKVFLAFTQADASTTRKYGGTGLGLVITKQFCQMMGGEVNVESQFGKGSTFS 305

Query: 806 IIFP 809
           I  P
Sbjct: 306 INLP 309


>gi|83944051|ref|ZP_00956508.1| sensory transduction histidine kinase [Sulfitobacter sp. EE-36]
 gi|83845298|gb|EAP83178.1| sensory transduction histidine kinase [Sulfitobacter sp. EE-36]
          Length = 798

 Score =  279 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 98/640 (15%), Positives = 209/640 (32%), Gaps = 51/640 (7%)

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEK--------YDIFSQQSPPPHLRMKN 238
           +    DP A    +      + EI     + + +          +  +     P +    
Sbjct: 182 SDGTRDPDAAFLGVAFAMVDVDEIFSDLFAAQNDLITLDVSFYDENGTPFQHHPTVASDA 241

Query: 239 KVSSLTEYYAHKD-DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297
              +      H       T  +    + E++ P    +  + L+               K
Sbjct: 242 PAPAFEFSRDHTGYGQRMTLHWASTPAFEAAQPNNAKWIVLALSLTITALILIIQSVILK 301

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKS 356
            +          +        E  +   ++   +P   V   G + + N +         
Sbjct: 302 RNLTINQTVADKTRELETQHQEKRS--ILENAMLPIISVRQSGEILHLNDAARQHLIAAG 359

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
                    +  LL    +   +    V++     T    +  +    W           
Sbjct: 360 HRKDATGDFVQDLLPEVDIHRADGGAKVVVPPHKGTTEPRTLEVEKNTW----------- 408

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476
                           +  +  D+     K+     +    L +   G+  I+ E     
Sbjct: 409 -----LTADAETRITLMLRDITDSERRTLKIAETEQRWSLALSSAHIGVFDIDLENGTSV 463

Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQ--NTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
            +     +  +P +   + P+   ++      + +   +       +    E        
Sbjct: 464 VSDTWRDIMHHPADPACQNPYYDKMQHVHPDDAAVVKKIELACLNGMTDRAEARFRIRVG 523

Query: 535 EEKLLSL---RIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
           ++    +    +++++              DI+E  + +                K DF+
Sbjct: 524 QDNWRWIKSDAVVVERAKNGRALRMLGIQIDITESNKLE--------------QMKHDFV 569

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
           A VSHE+RTPLT+I G    +   +     +   +        + + ++ +VND+LD+ K
Sbjct: 570 ATVSHELRTPLTSIKGAL-GLLEAQTQDDPDAGAVRLVQIATANCDRLVALVNDILDMEK 628

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709
           I +G M +  +P  L + V+ A   V+ YA+E ++ I     +    +L D   + Q+  
Sbjct: 629 INAGSMTVVPKPEKLGDIVTLAAEQVEPYASEWKVEIDVDTPDPDHHVLTDKNRIMQVLT 688

Query: 710 NILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
           N+LSNA  F      + ++T     +   + V + G G++    E+  +PF Q   S   
Sbjct: 689 NLLSNACKFAYPETAVTVTTAPV-GDMTKISVTNLGNGISEEFRERIFQPFSQAEASNTR 747

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +  GTGLGL +++ +V+A  G+    S P + T+     P
Sbjct: 748 QRGGTGLGLNISRHLVEAMGGEIGFDSVPGEETVFWFTCP 787


>gi|253568655|ref|ZP_04846066.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251842728|gb|EES70808.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 513

 Score =  279 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 89/513 (17%), Positives = 177/513 (34%), Gaps = 50/513 (9%)

Query: 324 ETVDKCPIPFF---VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
           + +D  P P     +      +Y N    L +  K  + +        +    +      
Sbjct: 29  DILDNLPFPIMVKDIQDSFRYYYWNKESELQSGIKREEAVGCTDY--EIYGEERGRRYRD 86

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
           +   ++           A       +    +  T           +         +    
Sbjct: 87  VDESLVQAGK----VYRAEESYSTVDG--IVHDTIAVKSIIKWKEKKKWLLVTRWDITRL 140

Query: 441 RINKRKMEIEVMQLCSILE-------ATSDGIAIINREGIILSTNRAVSKLFGYP----- 488
           +  +R++     +L   L        + + G+  I++  ++        +          
Sbjct: 141 KTYERELIAAKEELEKALNKQKLALKSVNFGLIYIDKNYLVQW-----EETTQIASLVKG 195

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
                 +                   + +          I      ++    +       
Sbjct: 196 RHYTPGQICYKTSALRDTPCGQCAFQKAIEQGK-----IIRHTIRIDQVDFEVTATPVYD 250

Query: 549 PFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
              +      L   DI+E  +    L  AK+ AE+ +  KS FLA +SHEIRTPL AIIG
Sbjct: 251 NEGTEIIGGLLRFEDITEKVKMDKMLQEAKEKAEESNRLKSAFLANMSHEIRTPLNAIIG 310

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
           FS++I              EY   +  +  L+L +++D+LD+SKIE+G M     P  ++
Sbjct: 311 FSDMI----CQTGEEEEKQEYMKIVSSNNELLLQLIDDILDLSKIEAGTMEFTLAPTDIN 366

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725
           + +      +Q       + I  +       +  D   + Q+ +N  +NA+ FTP G   
Sbjct: 367 DLMEGICRQMQEKNTSPDVAITFTEKAEECILNTDRVRLSQVIINFTNNAMKFTPKGS-- 424

Query: 726 IISTTH---TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
            I   +    + +E+   V+DTG+G+   ++ +  + F ++        +GTGLGL + +
Sbjct: 425 -IQMGYRIDEAKDEIYFYVKDTGIGIPADKINEVFERFVKLNTF----AKGTGLGLAICR 479

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            +V+   G     S   +G+      P+   S+
Sbjct: 480 VIVERLGGTIGADSKEGEGSCFWFRLPITQKSN 512


>gi|94263541|ref|ZP_01287352.1| PAS:ATP-binding region, ATPase-like:Histidine kinase, HAMP
           region:Histidine kinase A-like [delta proteobacterium
           MLMS-1]
 gi|93456074|gb|EAT06221.1| PAS:ATP-binding region, ATPase-like:Histidine kinase, HAMP
           region:Histidine kinase A-like [delta proteobacterium
           MLMS-1]
          Length = 579

 Score =  279 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 114/601 (18%), Positives = 206/601 (34%), Gaps = 59/601 (9%)

Query: 236 MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN 295
           +   V S     A +  +    +    T          D    +     ++       ++
Sbjct: 19  LSAAVISTGLIIAERALLKSDLEERGATIARILSSVTLDALLSHDYATMQRYTAEIAGDD 78

Query: 296 SKESFEYLSHRNHPSLSAYFDEGE---------NLTPETVDKCPIPFFVYSHGNLFYANP 346
           S  S   + H          D+G           L  E +    I F       + +   
Sbjct: 79  SIRSIAVIRHDGRLLAGELPDQGPGILLAEHPIRLGDEELGLIRIGFSTARLDTITWWII 138

Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
           +  +L        +        +L    L     ++  +   +D            I+ N
Sbjct: 139 AATVLLVVALH--LIGLLFTDLVLKRTVLFPLRDLQNAIKTVADGDLR------QRIEGN 190

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR-KMEIEVMQLCSILEATSDGI 465
                     P E                +  +     + ++++E  +L +I+   +DG+
Sbjct: 191 G---------PREFDEIAGTFNEMAHKLQDSFEVIAEHQHRLDLEKQKLAAIVGCMADGL 241

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
            + + EG+I   N +  ++ GY   ++L    +             Y    L  D     
Sbjct: 242 FVTDNEGVITVFNASAVQITGYQENEVLGSNCSELF-----RSTLCYDACALMHDDESRH 296

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAEKE 581
              T   T+  + L++ +    L  ++        T  DIS  K+        +K+A   
Sbjct: 297 NIETYLVTRAGESLTVAVSSAVLRDNAGQRVGGVQTFRDISAEKKRHELYCRTEKLA--- 353

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
                   A V+HEI TPL  IIG++ +IK          R       I         I+
Sbjct: 354 --ATGQLAAGVAHEINTPLGNIIGYAGLIKPDADPGANAER----VAIIIEQARKCSHII 407

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701
             LLD ++  +        PV L+  V   + +++L  ++K I +    A  +P   AD 
Sbjct: 408 RGLLDYARSSA----TTPSPVDLNALVRRVVEMLRLQLDKKEITLELHCA-VLPVFAADE 462

Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761
           R V+Q+ +N+L NAI     GG+I + T  T    V+L++RD+G G++     +   PF 
Sbjct: 463 RKVEQVVMNLLLNAIQAVAPGGRIELQTWSTEK-RVLLKIRDSGPGISEEMQSRIFDPFF 521

Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY---DTSHPHD 818
                    GEGTGLGL +   ++    G   + S   +GT   +  P+    +   P D
Sbjct: 522 TTKP----VGEGTGLGLAICAGIIAELQGSIDLESD-GEGTSFTVNIPITPEGEHDEPSD 576

Query: 819 C 819
            
Sbjct: 577 S 577



 Score = 40.0 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 16/233 (6%), Positives = 56/233 (24%), Gaps = 11/233 (4%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            +  D  G +   +    +  G    +++G    ++           +      ++    
Sbjct: 241 LFVTDNEGVITVFNASAVQITGYQENEVLGSNCSELFRSTLCYDACALMH--DDESRHNI 298

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +T L    G +  + + +++  +     +  G  G         +     L  R +K  +
Sbjct: 299 ETYLVTRAGES--LTVAVSSAVLRDNAGQRVG--GVQTFRDISAEKKRHELYCRTEKLAA 354

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQ-----SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
                      +     +I            P    +     + +       +     Y 
Sbjct: 355 TGQLAAGVAHEINTPLGNIIGYAGLIKPDADPGANAERVAIIIEQARKCSHIIRGLLDYA 414

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
             ++   S  +        +     +     +      +   +   +   +  
Sbjct: 415 RSSATTPSPVDLNALVRRVVEMLRLQLDKKEITLELHCAVLPVFAADERKVEQ 467


>gi|48374260|gb|AAT41952.1| putative two component sensor histidine kinase [Fremyella
           diplosiphon Fd33]
          Length = 975

 Score =  279 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 135/934 (14%), Positives = 272/934 (29%), Gaps = 164/934 (17%)

Query: 15  TSNCKGNTQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTDQNQESVSNTNYLDSENTF 74
           T  C  N+  L++      F  +KS+ E+   + F      D ++E + +     S+   
Sbjct: 68  TEECLTNSDGLTRF-----FLIKKSRVEDEYGNHFLVGIIRDISKEKLQSAKVCSSKQVL 122

Query: 75  VFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNY-AFKMIGMRLCDVSDILHIDPNNHI 133
                   +   W  D +      +++  + +G     ++IG    ++      D  N  
Sbjct: 123 EQVINNIPLATYWK-DFNSVYLGCNQQFAEIMGKDCPNQIIGKTDYELMQQ--QDNVNLF 179

Query: 134 GD----LLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRV 189
            +    +++ Q   YG    + I+     + ++   + +      F G            
Sbjct: 180 WESDFQVIESQKPEYGIVQCY-IKADGKQLWLETNKITLKDEQNNFIGI--LVTCQDITA 236

Query: 190 DNDPRALGKR------------------------LDKKFSHLHEIKKGH---SSVEKEKY 222
             +                               L      + +              + 
Sbjct: 237 RKEAELALAEKVSLAAFHVAVNTAITQSSTLKECLKGCTDAIVKHLNAAFARVWTLNAQE 296

Query: 223 DIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQ 282
           ++   Q+        +           K  ++  E+ P LT+     P   D        
Sbjct: 297 NVLELQASSGMYTHIDGPHRRVPVGMFKIGLIAEERQPHLTNAVLEDPRVGDKEWAKREG 356

Query: 283 YTK----------------------KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
                                         TL      + E                 E 
Sbjct: 357 MVAFAGYPLILDGNLVGVIAMFARHPLTELTLDALKLSANEIALGIKRLQAEEALQTSEG 416

Query: 321 LTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
                V+      + V   G   + N +   +  Y+  + I      S      ++    
Sbjct: 417 KYRHLVETSQDMIWSVDDKGYFIFVNQAVQTIYGYEPEEMIGR--HYSEFEPPEQIHQGL 474

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
            I P  L  S+ +     A +          L +        ++    +   G       
Sbjct: 475 NIVPQTL--SEESVFHYEAVVLA---KDGRRLNLLCNACLLRDEIGNIIGTTGTATNITQ 529

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
            +  ++ +      L +  EA+ DGI II+   ++ S N+  + L+  P E +       
Sbjct: 530 HKQAEQALLRSHAILQAQQEASIDGILIIDENRLVASYNQNFADLWQIPPEVLETGDDRQ 589

Query: 500 FLEQNTPS-----VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-- 552
            L+               +  +       + ++I L   K  ++        +    +  
Sbjct: 590 LLQWVLEQLKNPTEFLTKVEYLYQHLEEYSRDEILL---KSGRIFDRYSAPVRSLAGNCY 646

Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAE-----------------------KESSHKSDFL 589
                  DI+E KQ +  L +++                           ++ S     +
Sbjct: 647 GRIWYFRDITERKQAEAALLNSEARLRQQAQQLQAALRELQQTQTQLVQSEKMSSLGQLV 706

Query: 590 ARVSHEIRTPLTAIIGFSEV----------IKN--QRFGPLGNPRYIEYANYID----RS 633
           A V+HEI  P+  I G              +    Q++ P   P   ++   I+    RS
Sbjct: 707 AGVAHEINNPVNFIYGNLNHANTYSKDLLTLLELYQKYYPQPVPEIADFVELIELDFLRS 766

Query: 634 ------------GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
                        N + +IV  L   S+++  +M      V++ + +   + ++Q     
Sbjct: 767 DFPQILKSMEIGANRIREIVLSLRTFSRLDEAEMK----AVNIHQGIDSTLMILQSRLKG 822

Query: 682 KR----ILIRTSFANNIPRILADLRSVKQIALNILSNAIH-----------FTPS----- 721
                 I +   +  N+P +      + Q+ +NIL NAI             T       
Sbjct: 823 NNQVPKITVIKEY-GNLPLVECYSGQLNQVLMNILVNAIDVLEDAVINNQLSTAELLSIK 881

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
             QI I T    N +V + + D G G+ +   ++   PF          G+GTG+GL ++
Sbjct: 882 NPQIYIQTEFLDNHQVKIIIADNGAGIPDNIKQRIFDPFFTTKP----VGKGTGMGLAIS 937

Query: 782 KAMV-DANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
             ++   + G     S P +GT   I  PL   S
Sbjct: 938 YQIITKKHGGSLECTSQPGQGTKFVITIPLTQKS 971



 Score =  101 bits (252), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 58/550 (10%), Positives = 149/550 (27%), Gaps = 58/550 (10%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL-KRQNTWY 144
            +  D+  +   ++    + IG +  ++IG    D+      D      + +        
Sbjct: 8   VFVKDSQHHWVFLNNAYCRLIGFHESELIGKSEYDIFPKKQADRLYEKDEFIFNTGIVQE 67

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            +  L   +G   +  I  +   +         F   GI+     +    A      +  
Sbjct: 68  TEECLTNSDGLTRFFLIKKS--RVEDEYGN--HFL-VGIIRDISKEKLQSAKVCSSKQVL 122

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK----VSSLTEYYAHKDDVLKTEKYP 260
             +       +  +               +  K+     +         + D +      
Sbjct: 123 EQVINNIPLATYWKDFNSVYLGCNQQFAEIMGKDCPNQIIGKTDYELMQQQDNVNLFWES 182

Query: 261 LLTSEESSLPEQEDFH---TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
                ES  PE          +  Q   +    TL++        L      +     + 
Sbjct: 183 DFQVIESQKPEYGIVQCYIKADGKQLWLETNKITLKDEQNNFIGILVTCQDITARKEAEL 242

Query: 318 GENLTPETVD---KCPIPF---------FVYSHGNLF-YANPSFLLLTKYKSVD---DIE 361
                                              +  + N +F  +    + +   +++
Sbjct: 243 ALAEKVSLAAFHVAVNTAITQSSTLKECLKGCTDAIVKHLNAAFARVWTLNAQENVLELQ 302

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA-----RLHTIQWNRENSLAMTFI 416
            + G+ T +D P       +  + L   +R     +A     R+   +W +   +     
Sbjct: 303 ASSGMYTHIDGPHRRVPVGMFKIGLIAEERQPHLTNAVLEDPRVGDKEWAKREGMVAFAG 362

Query: 417 PFEKANQFPENMPQNGIEPEDVD------------------TRINKRKMEIEVMQLCSIL 458
                +     +          +                      +  ++    +   ++
Sbjct: 363 YPLILDGNLVGVIAMFARHPLTELTLDALKLSANEIALGIKRLQAEEALQTSEGKYRHLV 422

Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
           E + D I  ++ +G  +  N+AV  ++GY  E+++ + ++ F          + + + LS
Sbjct: 423 ETSQDMIWSVDDKGYFIFVNQAVQTIYGYEPEEMIGRHYSEFEPPEQIHQGLNIVPQTLS 482

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS----LTMHDISEWKQEKNKLSHA 574
                      +   K+ + L+L      L            T  +I++ KQ +  L  +
Sbjct: 483 --EESVFHYEAVVLAKDGRRLNLLCNACLLRDEIGNIIGTTGTATNITQHKQAEQALLRS 540

Query: 575 KKIAEKESSH 584
             I + +   
Sbjct: 541 HAILQAQQEA 550



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/120 (15%), Positives = 48/120 (40%), Gaps = 1/120 (0%)

Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
           SD + + + +   +  N A  +L G+   +++ K       +     +      I +  +
Sbjct: 5   SDPVFVKDSQHHWVFLNNAYCRLIGFHESELIGKSEYDIFPKKQADRLYEKDEFIFNTGI 64

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY-SLTMHDISEWKQEKNKLSHAKKIAEK 580
            Q  E+    S    +   ++    +  + + +    + DIS+ K +  K+  +K++ E+
Sbjct: 65  VQETEECLTNSDGLTRFFLIKKSRVEDEYGNHFLVGIIRDISKEKLQSAKVCSSKQVLEQ 124


>gi|326470773|gb|EGD94782.1| serine/threonine protein kinase [Trichophyton tonsurans CBS 112818]
          Length = 2374

 Score =  279 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 73/251 (29%), Positives = 134/251 (53%), Gaps = 12/251 (4%)

Query: 565  KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
            K  + + +H  K+ E  +  KS FLA +SH++RTP+T +IG SE++K  +     +P+  
Sbjct: 1866 KVAEVEANHNVKLKEDAAKAKSIFLANISHDLRTPMTGVIGLSELLKATKL----DPKQD 1921

Query: 625  EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
             Y   I    + +L ++ND+LD SK+E+GKM +   P++L + ++E +  ++    EK +
Sbjct: 1922 VYVESIRVCADTLLTLINDILDFSKLEAGKMKVSIVPINLRQTIAEVVRALRYTHREKGL 1981

Query: 685  LIRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVI 738
                   +  P   ++ D   + QI +N+LSN+  FTP+G  + +      +      V 
Sbjct: 1982 ETVEDLDSIDPDLLVMGDPVRLHQIFMNLLSNSYKFTPAGS-VTVRAIVEEDTPEKIRVT 2040

Query: 739  LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA-NMGKFYIFST 797
             +V DTG+G++  +L +  +PF Q  +S      G+GLGL + KA+++    G+ ++ S 
Sbjct: 2041 CKVADTGIGISEEQLVRLFRPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGRIWLQSK 2100

Query: 798  PAKGTLIEIIF 808
              +GT +    
Sbjct: 2101 EGEGTTVTFTL 2111


>gi|163854785|ref|YP_001629083.1| phosphate regulon sensor protein [Bordetella petrii DSM 12804]
 gi|163258513|emb|CAP40812.1| phosphate regulon sensor protein [Bordetella petrii]
          Length = 432

 Score =  279 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 77/412 (18%), Positives = 151/412 (36%), Gaps = 29/412 (7%)

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV--MQLCSI 457
           L    W           P                          +   E       + + 
Sbjct: 41  LFWRSWRLRAVSYWAHHPETSPPASVGPWDDILAPLYRYTRARARELAETRETVQGMLAA 100

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
            +A  DG+  +N +  I   NR      G  +           L          ++    
Sbjct: 101 AQALPDGVVTLNEDFQIEWCNRVARHHLGLSLPADRGHNLLNLLRAP------EFVAYAH 154

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI 577
             D  + +  + L    +E+++ + +       S+   L   D+++ ++ +         
Sbjct: 155 RDDWPEPI-LVRLAHAGQERVMMMHLAAY---ASNRRLLITRDVTQIEKLETT------- 203

Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
                  + DF+A VSHE+RTPLT + GF E +++     L + +  +Y + +      +
Sbjct: 204 -------RRDFVANVSHELRTPLTVLAGFLETLRDMPADALDDEQREQYMSMMHEQAQRM 256

Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697
             IV DLL +S +ES         V+L   +  A   ++  +  +          ++  +
Sbjct: 257 QAIVEDLLTLSTLESSPGT-DPRAVNLPGLLRTARQQIEALSAGRH-DFAWHIDESL-DV 313

Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757
           L     +     N+L+NA+ +TP GG+I +     ++      V+DTG+G+    L +  
Sbjct: 314 LGAETELASAMSNLLTNAVRYTPDGGRITVRWQGEADGAARFSVQDTGIGIAALHLPRLT 373

Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           + F ++   +     GTGLGL + K +   +  +  I S   KG++  + FP
Sbjct: 374 ERFYRVDRGRSRAAGGTGLGLAITKHIAIRHDAELLITSEVGKGSVFALHFP 425


>gi|119945449|ref|YP_943129.1| sensor histidine kinase PAS domain-containing protein [Psychromonas
           ingrahamii 37]
 gi|119864053|gb|ABM03530.1| PAS/PAC sensor signal transduction histidine kinase [Psychromonas
           ingrahamii 37]
          Length = 506

 Score =  279 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 97/499 (19%), Positives = 185/499 (37%), Gaps = 28/499 (5%)

Query: 317 EGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
           + + L    ++  P     + S+  +  AN +FL  ++      I     L  +     L
Sbjct: 30  QYQQLYDMLLNATPSSVLLIDSNFRITSANRNFLTRSQRTLSATIGCR--LREVFPIVIL 87

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
              +  + +     +    +   R+ T +          +      +          +  
Sbjct: 88  ERMDIKQQIQEVF-NTHKASVGQRM-TYRAPGVPFKTYYYRILPIESSEQCE-QVMLLME 144

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
           +  D       M      L SI+E+ SD +  ++ EG IL+ N A  KL G+    +  K
Sbjct: 145 DITDQIRLSEDMRRVESHLGSIVESASDLMLSLDTEGRILTWNSAAEKLSGFTFLKVQGK 204

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--- 552
            F  F + +    +  +   I       +L       +K+   +S+  I   +       
Sbjct: 205 FFFEFFKASEHLEIKTFFINICIN--VCSLNAEWELISKKGIEISVAWIFSPMKDDDAKT 262

Query: 553 -CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
                   D++E ++ + +L  ++K+A             ++HEIR PL      ++ + 
Sbjct: 263 VGIVAVGRDLTEQRKLEVELRQSQKLA-----ALGVMAGGIAHEIRNPLAVCSSAAQFLM 317

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
            +    L      E A  I  S      I+ +LL  S+    +   +  P+ LD  + E 
Sbjct: 318 EE---GLPLEFRTECAKKIQVSLEKASCIIENLLRFSRPSCEQ---NMVPMDLDTVLCET 371

Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
           I L+   A   +I I          +      ++Q+ +N   NAI+  P GG++ I    
Sbjct: 372 IMLIANQAKVYKIEIVYLPIGKCSLVSGIFTLLQQVFMNFFLNAINAMPEGGELGIILE- 430

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
              +E ++ +RDTG G+    L+    PF     +    G+G GLGL L  ++V  + G 
Sbjct: 431 QQGDEALVCIRDTGTGILEGALDNIFDPFHTSSPA----GKGVGLGLSLCYSIVKQHRGS 486

Query: 792 FYIFSTPAKGTLIEIIFPL 810
             + S   KG+   ++ P+
Sbjct: 487 ISVDSMVGKGSTFTVLLPI 505


>gi|307294607|ref|ZP_07574449.1| histidine kinase [Sphingobium chlorophenolicum L-1]
 gi|306879081|gb|EFN10299.1| histidine kinase [Sphingobium chlorophenolicum L-1]
          Length = 418

 Score =  279 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 80/355 (22%), Positives = 147/355 (41%), Gaps = 24/355 (6%)

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
             +LE  SD + +I   G I++ NRA  +L G     I  +   + +     +     L 
Sbjct: 75  RGLLEGISDPLMLI-ERGRIIAANRAALRLLG---AHIEGEDARIAIRHPAAAERLASLA 130

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA 574
            +        +    +G    E+   +RI            + + D S            
Sbjct: 131 PMAE-----PVMIELVGLGTREQRWQMRIAPVGEDDHVRRLVHLADHS------------ 173

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
              A      + DF+A  SHE+RTPL  I+GF E + +   G   +     +   +D   
Sbjct: 174 --GAHAAEKMRVDFVANASHELRTPLAGILGFIETLADPDLGK-DDETRQRFLKIMDGEA 230

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
             +  +++DL+ +S+IE+ K       V L   V+E + + +    E+   +    A ++
Sbjct: 231 RRMQRLIDDLISLSRIEAEKYRAPDSAVDLSGLVAEVVGVFRTSHGERGREVEMDIAPDL 290

Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELE 754
           P +  D   + Q+  N++ N++ +  +G  I ++     +    L V D G G+    L 
Sbjct: 291 PDVQGDRAQLSQLLHNLIGNSVKYGKAGTPIRVTLNDGPSGMTRLTVADEGEGIGPDHLP 350

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +  + F ++ + +     GTGLGL + K +V+ + G+  I S   KGT I I+ P
Sbjct: 351 RLTERFYRVDSGRSRAIGGTGLGLAIVKHIVERHRGRLDIASALGKGTAISILLP 405


>gi|326424287|ref|NP_762701.2| CheY-like receiver [Vibrio vulnificus CMCP6]
 gi|319999673|gb|AAO07691.2| FOG: CheY-like receiver [Vibrio vulnificus CMCP6]
          Length = 881

 Score =  279 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 88/258 (34%), Positives = 135/258 (52%), Gaps = 15/258 (5%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I E +Q+  ++ HAK+ A   +  KS FLA +SHEIRTPL  IIG +E++          
Sbjct: 350 IDEKQQQMVEIIHAKESAISANRAKSVFLANMSHEIRTPLNGIIGMTEILSQSELSS--- 406

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
            +  E    ID S   +L ++ND+LD+SKIESG +N+  +   + E V +A++L Q  A 
Sbjct: 407 -QQKEILGDIDTSSQSLLILLNDILDLSKIESGNLNISLQEADIRETVYQAMTLFQSKAT 465

Query: 681 EKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIIST-------THT 732
            K I +  +   +IP +++AD   +KQ+  N++ NAI FT  G    IST        H 
Sbjct: 466 SKNIELHITMGEDIPAKVMADDHRIKQVLTNLVGNAIKFTKEG---YISTFVNYQADEHD 522

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
               +  +V DTG+G+   +LE   +PF Q  +S   +  GTGLGL + + +V    G+ 
Sbjct: 523 HQGYLTFKVTDTGIGIDQAKLETIFEPFTQEDDSITRQFGGTGLGLAICRQLVAMMGGEL 582

Query: 793 YIFSTPAKGTLIEIIFPL 810
              ST   G+      P+
Sbjct: 583 TATSTKGLGSCFSFTIPV 600


>gi|209547459|ref|YP_002279377.1| multi-sensor signal transduction histidine kinase [Rhizobium
            leguminosarum bv. trifolii WSM2304]
 gi|209538703|gb|ACI58637.1| multi-sensor signal transduction histidine kinase [Rhizobium
            leguminosarum bv. trifolii WSM2304]
          Length = 1211

 Score =  279 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 98/805 (12%), Positives = 235/805 (29%), Gaps = 69/805 (8%)

Query: 56   DQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPK----------T 105
            D + +  +     +SE           VR  W+++        ++               
Sbjct: 430  DIDDQVRAEEAVRESERALQQMIDAVPVR-VWSLEPTSGSVYFNKRYQDHFRAVIADFDA 488

Query: 106  IGNYAFKMIGMRLCDVSDILH-IDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLA 164
            +G    + +   L  +       D    + +  +       +      +  ++Y   +  
Sbjct: 489  LGEPRIEDL---LRQLIHPEDAPDVQRTLRNCFESGGGTAMRFRWREKD--DVYRWAECR 543

Query: 165  ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKY-- 222
              P +  +      + +G+      +       +  +++ S L ++              
Sbjct: 544  VEPRHDDDGRVV--QWYGVSLDIDEEVRALEALRDRERELSQLVDMVPAQIRRLTPTGEP 601

Query: 223  --------DIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV-LKTEKYPLLTSEESSLPEQE 273
                    D F            +++S++     H DD     +      +       + 
Sbjct: 602  VFFNKRLIDFFGLDVGDMDKPGVSRLSAVINTLVHPDDAPRLLQTVHRSLASGDPFSIKY 661

Query: 274  DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP----SLSAYFDEGENLTPETVDKC 329
                 +            L++ +    ++                  + E    + VD  
Sbjct: 662  RMRRFDGAYRWVDGRAEPLRDQNGTITQWYVISVDIDDEMRAQEALRDRERELSQLVDMV 721

Query: 330  PIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL--LDAPKLSDNNAIKPVML 386
            P   +     G   + N           +     A G+S L  L    +  ++A      
Sbjct: 722  PSLLWRLDPEGTPTFFNQRLKDFLGLDIIG--REAPGVSRLTDLIEAAVHPDDATSLAKA 779

Query: 387  YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
                       ++ + ++        +        ++    +   G+  +  D    +  
Sbjct: 780  LNQSLATGERFSKQYRLRRADGIYRWVRGSAEPLRDESGRIVQWYGLSHDIDDQLRVEEA 839

Query: 447  MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK-------PFTV 499
            +      L  I+E     I     +G  +  N  +    GY +E++              
Sbjct: 840  LRERERSLWKIVETLPAMIDCAAPDGEPVYRNPQLRDFLGYKLEELDGTGKTRLDGTLDA 899

Query: 500  FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS---- 555
             +  +  + +       LS        +       + +   +      +  +        
Sbjct: 900  GVHPDDVAGVKENYAHSLSTGEP--YARRHRLRRYDGEYRWVETRAAPMRNAEGVIVQWN 957

Query: 556  LTMHDISEWKQEKNKLSHAKKIAEKESS--HKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
            +   D+    + +  L  A++   + S     ++  A ++HE+  PL A++  S   +  
Sbjct: 958  VICLDVDAEVRAEEDLRQAREGLARASQVASLAELSASIAHEVNQPLAAVVANSHACQRW 1017

Query: 614  RFGPLGN-PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
                  N  R       I R  N   D+V+ +  + K  + +        +L   V EA 
Sbjct: 1018 LMAEPPNMERAQRTVERIIRDANSAADVVSRIRALFKQSADR----RVHTTLFGVVDEAR 1073

Query: 673  SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP--SGGQIIISTT 730
            +L+   A  +R  I      N+P I  D   ++Q+ +N++ N I       G ++I    
Sbjct: 1074 NLMAAEAARRRARIDVEVDGNLPLIAIDRVQIQQVLINLIRNGIEAMDTVDGDRVIGMRV 1133

Query: 731  HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
                  +   + D G G+     EK  +PF         +  G G+GL + +++V+ + G
Sbjct: 1134 RHMGNAIQTEISDRGQGI--EFPEKMFEPFFTT------KENGMGMGLAICRSIVELHGG 1185

Query: 791  KFYIFSTPAKGTLIEIIFPLYDTSH 815
            + +       G  +    P+   + 
Sbjct: 1186 RLWAEKNDPHGATLIFTLPIETKAA 1210



 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 52/531 (9%), Positives = 137/531 (25%), Gaps = 43/531 (8%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMI--GMRLCD-----VSDILHIDP-NNHIGDLL 137
            W +   G     +  +   +G         GM   +     +          + +   L
Sbjct: 326 VWRLTPEGEPTFFNRRMVDFLGFDVADTDRPGMSRLEAVIEAIIHPDDAAGFRDALNHCL 385

Query: 138 KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG 197
                +  +  L   +G  +Y  +   A P+  ++      + +G+ H            
Sbjct: 386 VTGENFAMRYRLRRADG--IYHWMSSRAEPMRDQSGSIV--QWYGLCHDIDDQVRAEEAV 441

Query: 198 KRLDKKFSHLHEIKKGHSSVEKEKY----------DIFSQQSPPPHLRMKNKVSSLTEYY 247
           +  ++    + +         +             D F           + ++  L    
Sbjct: 442 RESERALQQMIDAVPVRVWSLEPTSGSVYFNKRYQDHFRAVIADFDALGEPRIEDLLRQL 501

Query: 248 AHKDDVLKTEKY-PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
            H +D    ++              +  +   +      +       ++     ++    
Sbjct: 502 IHPEDAPDVQRTLRNCFESGGGTAMRFRWREKDDVYRWAECRVEPRHDDDGRVVQWYGVS 561

Query: 307 NHP----SLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVD-DI 360
                         + E    + VD  P     +   G   + N   +        D D 
Sbjct: 562 LDIDEEVRALEALRDRERELSQLVDMVPAQIRRLTPTGEPVFFNKRLIDFFGLDVGDMDK 621

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
                LS +++     D+       ++RS  +    S +    +++      +       
Sbjct: 622 PGVSRLSAVINTLVHPDDAPRLLQTVHRSLASGDPFSIKYRMRRFDGA-YRWVDGRAEPL 680

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
            +Q         I  +  D    +  +     +L  +++     +  ++ EG     N+ 
Sbjct: 681 RDQNGTITQWYVISVDIDDEMRAQEALRDRERELSQLVDMVPSLLWRLDPEGTPTFFNQR 740

Query: 481 VSKLFGYP--VEDILRKP-----FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
           +    G      +              +  +  + +   L + L+   R    K      
Sbjct: 741 LKDFLGLDIIGREAPGVSRLTDLIEAAVHPDDATSLAKALNQSLATGER--FSKQYRLRR 798

Query: 534 KEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEK 580
            +     +R   + L   S   +      HDI +  + +  L   ++   K
Sbjct: 799 ADGIYRWVRGSAEPLRDESGRIVQWYGLSHDIDDQLRVEEALRERERSLWK 849



 Score = 65.4 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 17/191 (8%), Positives = 52/191 (27%), Gaps = 15/191 (7%)

Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465
             +  +   F+     +           +   +  R +   +     +L  +++     +
Sbjct: 267 KHKQIMLQLFLAISAFSALIVAAISRQHQLAVLTLRQSVETLREREQELSQLVDMVPSHV 326

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKP--------FTVFLEQNTPSVMNHYLTEIL 517
             +  EG     NR +    G+ V D   +P            +  +  +     L   L
Sbjct: 327 WRLTPEGEPTFFNRRMVDFLGFDVAD-TDRPGMSRLEAVIEAIIHPDDAAGFRDALNHCL 385

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSH 573
                +           +     +    + +   S     +    HDI +  + +  +  
Sbjct: 386 VTG--ENFAMRYRLRRADGIYHWMSSRAEPMRDQSGSIVQWYGLCHDIDDQVRAEEAVRE 443

Query: 574 AKKIAEKESSH 584
           +++  ++    
Sbjct: 444 SERALQQMIDA 454


>gi|115379211|ref|ZP_01466329.1| histidine protein kinase AsgD [Stigmatella aurantiaca DW4/3-1]
 gi|310820022|ref|YP_003952380.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|115363798|gb|EAU62915.1| histidine protein kinase AsgD [Stigmatella aurantiaca DW4/3-1]
 gi|309393094|gb|ADO70553.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 665

 Score =  279 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 95/693 (13%), Positives = 221/693 (31%), Gaps = 48/693 (6%)

Query: 132 HIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN 191
            + +L++ +         W  +  +  +  +  A P    + +  G     +    R   
Sbjct: 3   ALAELIESE--LSLLVRRWTGQVQDQ-LSFEAHAGP--DVHGQVQGVLRELVF-CLRRGA 56

Query: 192 DPRALGKRLDKKFSHLH---EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA 248
            P    +  +  F        ++    + +  +  I             ++V  L+++++
Sbjct: 57  VPEPGLRASEHSFQRHRMGCRLEALVRAYDLLRGVIMDLMEERLLPVTLSEVRVLSDFFS 116

Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
                  +E +P   +  + L E E                  L+  + E    L     
Sbjct: 117 TAIREGVSEHHPRSEALVARLAENEGQEGAPARPLGTMTDITGLKQAADERERLLGEVEA 176

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
                            + K P              N  +  L        +        
Sbjct: 177 ARNRLLSVFENAPAFLALLKGPEHVM-------EVVNTPYQRLVGTGRK--LVGLSVAEA 227

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE---NSLAMTFIPFEKANQFP 425
           L   P++     +  +       T    +                + + F+     +   
Sbjct: 228 L---PEVVPQGFVALLDGVYRTGTPYIGNETFARFDRQGRGELEEVCVNFVYQPLRDARG 284

Query: 426 ENMPQNGIEPEDVDTRINKRKME-------IEVMQLCSILEATSDGIAIINREGIILSTN 478
           +         +  +   ++++ E           QL  + +A    ++++  E      N
Sbjct: 285 QVDGIFVFGFDITEQVQSRQRAETLARKVQASETQLRQVTDAIPVLVSLVTAEERYGFAN 344

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
           +A    FG+P E ++ +P    + +   +V+  Y+   L+ +     +          + 
Sbjct: 345 KAYEDWFGHPRETLIGRPVREVIGEAAYAVLGPYVQRGLAGESFSFEQHGVPYRFGGTRD 404

Query: 539 LSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
           + +     +        Y   + DI+  ++ +  L    +  +         +  VSH++
Sbjct: 405 VKVTFNPYRDMNGQPDGYVALLQDITVQRRMEAALKRQAEFEQH-------LIGIVSHDL 457

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE-SGKM 655
           R+PL AI   +  +  +      + R  +    I  +    + +V DLLD ++    G +
Sbjct: 458 RSPLGAIHLGATAMARRED---LDERSRKSVMRIQNAAERAIRMVKDLLDFTQARLGGGI 514

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715
            +   P +L E     +  V+     + + +R S          D   + Q+  N+++NA
Sbjct: 515 RIERRPTNLHELARGVVDEVEAAYPARELRVRRSGDGRGSW---DPDRLSQVVQNLVTNA 571

Query: 716 IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           + ++P    I + T    + EV L V + G  +    L    +P  +        G   G
Sbjct: 572 LKYSPDDTPIQVET-FGVDGEVTLSVHNQGAPIPPELLASLFQPLTRGTAEIDTAGRSVG 630

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           LGL + +++V+A+ G+  + ST   GT   +  
Sbjct: 631 LGLYIVQSIVEAHGGRVEVQSTAEVGTTFTVRL 663


>gi|169824287|ref|YP_001691898.1| two-component sensor histidine kinase [Finegoldia magna ATCC 29328]
 gi|167831092|dbj|BAG08008.1| two-component sensor histidine kinase [Finegoldia magna ATCC 29328]
          Length = 567

 Score =  279 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 80/366 (21%), Positives = 167/366 (45%), Gaps = 33/366 (9%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           +++     + +I +   +G+ ++++   +LS N++   LFG        +PF      N 
Sbjct: 232 ELQERSTTIKTITDNMREGLILLDKNMNVLSVNKSAEFLFGASDSRYEGRPFISL---NR 288

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS---SCYSLTMHDIS 562
              ++  + +++S      +     G       + L + I  +      +   L + D S
Sbjct: 289 DLKIHSAIKDVISTKTAHHINIEMQG-------ILLSMYIAPVLDEENINGVLLFLVDES 341

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  + +                + +F A VSHE+++PLT+I G++E+I+N    P     
Sbjct: 342 DKIKAE--------------KRRREFSANVSHELKSPLTSINGYAEMIENNMVSP---EN 384

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             ++A+ I + G  +L+++++++ +SK++    N+     + ++ + E I   Q   + K
Sbjct: 385 VSKFASIIHQEGLRLLELIDNIIKLSKLDESGDNIEKILFNPEKIIDEIIKSNQNKLDSK 444

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           +I I T    N   I  +   +K++  N+++NAI +    G+I IS     N++  +   
Sbjct: 445 QIEIITDLQENCL-IYGNENLIKEMIENLVTNAIKYNKISGKIKISI-FKDNDKTKIICE 502

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG+G+     ++  + F  +  S+  + E TGLGL + K +VD + G   + S    GT
Sbjct: 503 DTGIGIAEKYQKRVFERFFVVDKSRSSQ-ESTGLGLSIIKHIVDIHDGTIELESKLDVGT 561

Query: 803 LIEIIF 808
            I I  
Sbjct: 562 KITITI 567


>gi|115351649|ref|YP_773488.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria AMMD]
 gi|115281637|gb|ABI87154.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria AMMD]
          Length = 705

 Score =  279 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 77/253 (30%), Positives = 142/253 (56%), Gaps = 6/253 (2%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E ++    L  A   AE  +S KSDFLAR+SHEIRTP+  ++G +E+++  R       +
Sbjct: 5   EIERRDVDLQAAIATAEAANSAKSDFLARMSHEIRTPMNGVLGMTELLQRTRLTS----K 60

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             ++ + + RSG  +L I++D+LD SKIE+GK+ L     +L + + + ++L++  A  K
Sbjct: 61  QRKFVDTVYRSGQTLLVIIDDILDFSKIEAGKLTLERIDFNLHQLLDDVVALMEPNAQRK 120

Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
            + +    A+++P+ +  D   ++QI  N+L NAI FT  G  + +S  ++ +  ++ ++
Sbjct: 121 ELELVYQRADSVPQRMRGDPVRLRQILTNLLGNAIKFTEHG-HVALSAAYSDDGRIVFKI 179

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            D+G+G+      +  +PF Q  +S   +  GTGLGL +++ + +   G   + STP KG
Sbjct: 180 ADSGIGIAPDVAAQLFRPFQQADSSTARKYGGTGLGLVISRQLAEMMGGTLALDSTPGKG 239

Query: 802 TLIEIIFPLYDTS 814
           ++  +  P    S
Sbjct: 240 SVFTVTTPFEPAS 252


>gi|315648818|ref|ZP_07901913.1| multi-sensor signal transduction histidine kinase [Paenibacillus
           vortex V453]
 gi|315275786|gb|EFU39138.1| multi-sensor signal transduction histidine kinase [Paenibacillus
           vortex V453]
          Length = 604

 Score =  279 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 80/465 (17%), Positives = 170/465 (36%), Gaps = 84/465 (18%)

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
           V    +              +               + ++  +         + + T++ 
Sbjct: 185 VSYRVAKGLTSPLEKITRVARRISRLEYDARVK-IHRQDEIGQLAQAINAMADSLQTQL- 242

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            R +      L S+L   + GI ++NR G I+  NRA  K  G   E I  K +    + 
Sbjct: 243 -RTIRDNEDLLQSVLNNMTGGIVMVNRAGQIILVNRAAEKTLGIDAEVITGKSYRELKQH 301

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMH 559
              + +         L+ ++   +        E ++ L  +  +              + 
Sbjct: 302 YELTKLME-----EGLESKEDFHEERNLYYPVEAIIRLDGVTMRQEEEEDSYRGMLFLLQ 356

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE----------- 608
           D+S+ ++ +                +S+F+A VSHE++TPL A+ GF+E           
Sbjct: 357 DVSDIRRLE--------------RMRSEFVANVSHELKTPLAAVKGFAETLLGGGVTDEK 402

Query: 609 -------VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
                  +                    I      +  ++ D+L++SKIES ++ + + P
Sbjct: 403 TSRSFLQI--------------------IYDESERLNRLIGDILELSKIESKRIQMDYSP 442

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           + L         +++  A +KRI +       +  +  D   ++QI +N+LSNAI++T  
Sbjct: 443 IHLSVFFDTISEMMRTVAEKKRITLELDIPEEL-FMEGDEDKLRQIFMNLLSNAINYTQE 501

Query: 722 GGQIIISTTHT-----SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI------- 769
           GG++ ++         +++ V   V D+G+G+   +L +  + F ++  ++         
Sbjct: 502 GGRVKLTAREQHNNGSADDMVEFVVTDSGIGIPKKDLPRIFERFYRVDKARSRGSGGTGL 561

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
                     + K +VD + G   + S    G+   I  P+   +
Sbjct: 562 GLS-------IVKHLVDLHHGTIKVESELGTGSSFIIDLPVLQET 599


>gi|260220546|emb|CBA28192.1| hypothetical protein Csp_A06050 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 640

 Score =  279 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 78/283 (27%), Positives = 140/283 (49%), Gaps = 15/283 (5%)

Query: 533 TKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
                 + L +I+  +   S +          +++ ++L  A+  AE+ +  KSDFLA +
Sbjct: 208 ESSGSRVMLVLILFGIAARSRWVA--------ERQTDELRQARDAAEQANQAKSDFLANM 259

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHEIRTP+  ++G + ++         N    +YA  I  SG  +L I+ND+LD+SKIE+
Sbjct: 260 SHEIRTPMNGVLGMTGLLLESNL----NKEQRDYATSICHSGEALLAIINDILDLSKIEA 315

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNI 711
           G+M     P SLD  V   +S++++ A +K +              + D   ++Q+  N+
Sbjct: 316 GRMEFESNPFSLDVLVDSVVSVLRIRAEDKGVFFSVGLPEGDGMDYVGDSLRIRQVLFNL 375

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           L NA+ FT  G ++ +     +N  +   VRD+G+G++   L +    F Q+ +S   + 
Sbjct: 376 LGNAVKFTMQG-EVRLEIKVITNG-LRFEVRDSGIGISQEGLARIFSNFVQVDSSTSRKF 433

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
            GTGLGL +++ +V+   G   + S   +G+      PL  + 
Sbjct: 434 GGTGLGLVISRKLVEGMNGSMGVESELGQGSCFSFELPLKQSE 476


>gi|224370164|ref|YP_002604328.1| predicted two-component sensor histidine kinase [Desulfobacterium
           autotrophicum HRM2]
 gi|223692881|gb|ACN16164.1| predicted two-component sensor histidine kinase [Desulfobacterium
           autotrophicum HRM2]
          Length = 495

 Score =  279 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 85/462 (18%), Positives = 171/462 (37%), Gaps = 28/462 (6%)

Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
           S  DI+     S L + PK   N  ++ V+        +         + +   S  +  
Sbjct: 44  SGQDIKGQFCHSALYNLPKPCANCPVREVIRTGKPTISLP--------RMDNCTSACLYA 95

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
            P E        +         +D    +R        L +++ +  DG+   +  G IL
Sbjct: 96  YPMEIKENDTPAIVVLDFHLPSLDECDERRIA--SNAFLRNLIYSAVDGVIAADMTGRIL 153

Query: 476 STNRAVSKLFGYPVEDILRK-PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
             NRA +++ GY  E+            +     +  YL                L   +
Sbjct: 154 IFNRAATEITGYSKEEAFESLDIRNLYPKGDAHRIMGYLRSDAHGKKGVIRSYKQLALQR 213

Query: 535 EEKLLSLRIIIKKLPFSSCYSLT---MHDISEWKQEKNKLSHAKKIAEKESSH--KSDFL 589
           +   + + +    +        T    HD++   + + +L   +    +           
Sbjct: 214 DGTTIPISLNASIVYEGDREIATIGFFHDLTGTLRMEAELEKTQTQLLQAEKMSSLGKLA 273

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
           A V+H++  PL  I  F++++  +      +       + I R       IV +LL+ ++
Sbjct: 274 AGVAHQLNNPLGGITLFAQLMLEEH---ELSDDAKSDLSRIQRDAERCSAIVKELLEFAR 330

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709
               + N    P  ++  VS  + L++  +  + I I  ++   +P+I AD + +  + +
Sbjct: 331 ----QTNREVRPHDINTIVSRTLFLLKNQSIFQNIDIVETYDKTLPQIPADGQQLNHVFM 386

Query: 710 NILSNAIHFTPSGGQIIISTTHT-SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
           NI+ N        G++ I T  +     V + + DTG G+    L    +PF        
Sbjct: 387 NIILNGADAMAGKGRLEIRTGFSADQTMVKIEISDTGPGIDKNLLSTIFEPFFTTK---- 442

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             G+GTGLGL +A  +++++ G+ +  +    GT   I+ PL
Sbjct: 443 EVGKGTGLGLSMAYGIIESHGGRIWAENREPTGTRFIILLPL 484



 Score = 45.0 bits (105), Expect = 0.047,   Method: Composition-based stats.
 Identities = 32/206 (15%), Positives = 61/206 (29%), Gaps = 25/206 (12%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL---------KRQ 140
           D  G +   +    +  G    +       +  DI ++ P      ++         K+ 
Sbjct: 147 DMTGRILIFNRAATEITGYSKEEAF-----ESLDIRNLYPKGDAHRIMGYLRSDAHGKKG 201

Query: 141 NTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
                K      +GT   +PI L A  +Y  +RE +     G  H         A    L
Sbjct: 202 VIRSYKQLALQRDGTT--IPISLNASIVYEGDREIAT---IGFFHDLTGTLRMEA---EL 253

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
           +K  + L + +K  S  +          +P   + +  ++  L E+    D      +  
Sbjct: 254 EKTQTQLLQAEKMSSLGKLAAGVAHQLNNPLGGITLFAQLM-LEEHELSDDAKSDLSRIQ 312

Query: 261 LLTSEESSL--PEQEDFHTINLNQYT 284
                 S++     E     N     
Sbjct: 313 RDAERCSAIVKELLEFARQTNREVRP 338



 Score = 44.2 bits (103), Expect = 0.093,   Method: Composition-based stats.
 Identities = 16/145 (11%), Positives = 35/145 (24%), Gaps = 10/145 (6%)

Query: 313 AYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
                        +             G +   N +   +T Y   +  E      +L  
Sbjct: 123 ERRIASNAFLRNLIYSAVDGVIAADMTGRILIFNRAATEITGYSKEEAFE------SLDI 176

Query: 372 APKLSDNNAIKPVMLYRSD--RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
                  +A + +   RSD         +           ++ ++           E + 
Sbjct: 177 RNLYPKGDAHRIMGYLRSDAHGKKGVIRSYKQLALQRDGTTIPISLNASIVYEGDRE-IA 235

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQL 454
             G   +   T   + ++E    QL
Sbjct: 236 TIGFFHDLTGTLRMEAELEKTQTQL 260


>gi|218781801|ref|YP_002433119.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218763185|gb|ACL05651.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 681

 Score =  279 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 90/553 (16%), Positives = 198/553 (35%), Gaps = 49/553 (8%)

Query: 287 QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYAN 345
                 + + ++    L        ++  +  ++L     +   +    V     +  AN
Sbjct: 5   AGPAPNKGDLEKRIFELEAELELLRASGANGEDDLFRTMYESSNVGIARVALDFTILEAN 64

Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405
            ++  +  Y   + I         + AP+    N  K   L   D    +       I+ 
Sbjct: 65  RAYCGMLGYSEEELIGK---TLQEITAPESIPENIEKQKQLR--DLKIDSFRMEKEFIRK 119

Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465
           +   +  +        N+  E     G   +  D +  + ++     +  ++ E    G+
Sbjct: 120 DGSQAWGL-LHASVIKNRQGEAQYFLGSVADITDRKKVEAELRESEFKYRTLFENMEQGV 178

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRK----PFTVFLEQNTPSVMNHYL--TEILSL 519
                 G +   N    +LFG   ++ L +    P     ++    +        + LS 
Sbjct: 179 FYQKDTGEMFDANSRALELFGLTRDEFLGRTSMHPEWKVFDEEGNPLKPEDYPSRKTLST 238

Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-----YSLTMHDISEWKQEKNKLSHA 574
                 + + + + ++++++ L +                 +T+HD++  +  + +LS +
Sbjct: 239 GRAIRDQVVGVYNPRKKQMVWLSVSAIPQCGHDHELPCQVFVTLHDLTALRNMQRRLSQS 298

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
            K+              ++H+    L+ ++G +E+  +       +    E    I  +G
Sbjct: 299 HKL-----EAIGTLAGGIAHDFNNLLSVVLGNAELAVSD---TPHDSPAAESLLEIQSAG 350

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
               D+V  LL+ +K E  +  L    V     V E+I  ++       + I+     N 
Sbjct: 351 MRARDVVRQLLEFAKPEGKRKQL----VDFIGIVQESIRFLRATIPS-TVDIQVKILINK 405

Query: 695 PRILADLRSVKQIALNILSNAIHFT-PSGGQIIISTTHTS-------------NEEVILR 740
             ++AD  ++ Q+ +N+ +NA H     GG + ++                   E V L 
Sbjct: 406 APVMADPSNLYQVMINLCTNAAHAMAGRGGVLGVNVARHESNGEDPDFFALAPGEYVRLS 465

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V DTG+GM      K   P+       +  GEG G+GL +   +++ + G+ ++ S P K
Sbjct: 466 VSDTGIGMDAQTQNKIFDPYFTT----RDVGEGAGMGLAVVHGILETHGGRIHVESEPEK 521

Query: 801 GTLIEIIFPLYDT 813
           G+   ++FPL   
Sbjct: 522 GSTFTVVFPLASA 534



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 56/380 (14%), Positives = 108/380 (28%), Gaps = 40/380 (10%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK--RQNTWYG 145
            +     + E +      +G    ++IG  L +++    I  N      L+  + +++  
Sbjct: 53  RVALDFTILEANRAYCGMLGYSEEELIGKTLQEITAPESIPENIEKQKQLRDLKIDSFRM 112

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +      +G+       L A  I +R  E   F G   V          A  +  + K+ 
Sbjct: 113 EKEFIRKDGSQA--WGLLHASVIKNRQGEAQYFLG--SVADITDRKKVEAELRESEFKYR 168

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
            L E  +     +K+  ++F   S         ++  LT         +  E        
Sbjct: 169 TLFENMEQGVFYQKDTGEMFDANSRAL------ELFGLTRDEFLGRTSMHPEWKVFDEEG 222

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
               PE              +     + N  K+   +LS    P      +         
Sbjct: 223 NPLKPEDYPSRKTLSTGRAIRDQVVGVYNPRKKQMVWLSVSAIPQCGHDHE--------- 273

Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEI-AGGLSTLLDAPKLSDNNAIKPV 384
               P   FV  H      N     L++   ++ I   AGG++   +      +  +   
Sbjct: 274 ---LPCQVFVTLHDLTALRNMQ-RRLSQSHKLEAIGTLAGGIAHDFNNLL---SVVLGNA 326

Query: 385 MLYRSD-RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
            L  SD      A+  L  IQ     +  +     E A    +                 
Sbjct: 327 ELAVSDTPHDSPAAESLLEIQSAGMRARDVVRQLLEFAKPEGKRKQLVDFIGIV------ 380

Query: 444 KRKMEIEVMQLCSILEATSD 463
               +  +  L + + +T D
Sbjct: 381 ----QESIRFLRATIPSTVD 396


>gi|218438439|ref|YP_002376768.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
 gi|218171167|gb|ACK69900.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
          Length = 585

 Score =  279 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 82/255 (32%), Positives = 132/255 (51%), Gaps = 4/255 (1%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E  Q       A+  AE+ +  K +FL  +SHE+RTPLTAI+G+S+++K          +
Sbjct: 193 ERNQLLKNEHSARLEAEQLNQIKDEFLMMLSHELRTPLTAILGWSQLLKKGLITQKN--K 250

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             +    I+R+  L   +V+DLLD+S+I + K+ L  EP+ L+  +   +  + L A  K
Sbjct: 251 VDKALETIERNAKLESKLVDDLLDVSRILANKLILKKEPIDLEFIIKLTLDSILLTAQAK 310

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
            I I+T   +   ++  D + ++Q+  ++LSNAI FT  GG I I+ T   NE   + + 
Sbjct: 311 EITIKTLIQSPNLKVWGDKQRLQQVFWHLLSNAIKFTGEGGVITITLT-QDNERAKIIIH 369

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKG 801
           DTG G+    L    K F Q  +S Q    G G+GL +A  +V+ + G+    S    KG
Sbjct: 370 DTGQGIKPELLPFVFKRFWQADSSSQRIAGGLGIGLSIAHRLVELHNGQIQAESLGEEKG 429

Query: 802 TLIEIIFPLYDTSHP 816
               +I PL  + +P
Sbjct: 430 ATFTVILPLQHSENP 444


>gi|218782041|ref|YP_002433359.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218763425|gb|ACL05891.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 1110

 Score =  279 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 94/594 (15%), Positives = 200/594 (33%), Gaps = 48/594 (8%)

Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303
            +    +              E +    +     +   Q      +      S  +F+ L
Sbjct: 405 DKTQTEESIRAYARTIGADEEECAKAFWETPSMNVEEFQRIADLLYTFANTLSDMAFQNL 464

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKC-----PIPFFVYSHGNLFYANPSFLLLTKYKSVD 358
                 +     +E          K       +   +   G   Y + +      +K  D
Sbjct: 465 QQARFIAERKQAEEAIKRHQSLHSKLVANIGDVIVIIDQEGVSRYKSANIEKHFGWKPED 524

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
            +  +   +     P+  +        L R          R    +        + F   
Sbjct: 525 VLGKSTWDN---VHPEDIEGAKKFFADLAREPDKTGVLECR---YRRKDGAFRWIEFTGV 578

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
                 P+     G   +  + +  ++ +     +  ++  A+  GIAI ++ G+IL  N
Sbjct: 579 SLF-HDPDINGILGNYHDITERKEAEKSLRESEARFKALHNASFGGIAIHDK-GVILDCN 636

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
           + +S++ G+ VE+++     + + + +  ++   +                +G  K  + 
Sbjct: 637 QGLSQISGHTVEELIGMDGLLLIAEQSRDLVMGNILAGYEKP------YEAMGVRKNGEE 690

Query: 539 LSLRIIIKKLPFSSCYSLT--MHDISEWKQEKNKLSHAKKIAEKESSHKS--DFLARVSH 594
             LR+  + +P+           DI+E K  + +    +    +    +S       V+H
Sbjct: 691 FPLRLEARNIPYQGKQVRVVEFRDITESKAAEAEREKLQSQLLQAQKMESVGRLAGGVAH 750

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           +    L+ I+G +E+  ++      NP + +  + I  +     DI   LL  ++    K
Sbjct: 751 DFNNMLSVIMGHAEMAMDEMDPA--NPVFAD-LSEIFSAAQRSADITRQLLAFAR----K 803

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714
             +  + + L+  V   + +++     + I +  +  NN+  +  D   + QI  N+  N
Sbjct: 804 QTIAPKVLDLNHTVEGMLKMLRRLI-GEDIDLVWAPHNNLWAVNMDPTQIDQILANLCVN 862

Query: 715 AIHFTPSGGQIIISTTH-------------TSNEEVILRVRDTGVGMTNYELEKAMKPFG 761
           A       G+I+I T+                 + V+L V D G GM     E   +PF 
Sbjct: 863 ARDAIDGVGKIVIETSKVSITDSPDQNSEARPGDYVVLAVSDDGKGMDFQTQENLFEPFF 922

Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
               S +   +GTGLGL +   +V  N G   + S   +G   +I  P +    
Sbjct: 923 ----STKDVDKGTGLGLAMVYGIVKQNKGFITVQSEVGQGAAFKIHLPKHTAPA 972



 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 56/513 (10%), Positives = 130/513 (25%), Gaps = 64/513 (12%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D +G   ++++   + +G    ++IG    D       +         K      G   
Sbjct: 174 LDENGCFIQVNQTWLQILGYAREEVIGRPFSDFLHPDWKEHFKENFPRFKAIGEILGVEF 233

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND-PRALGKRLDKKFSHL 207
               +    ++ +            +F   +   I+           AL KRL      +
Sbjct: 234 YMRKK-DGAFILVSFNGKIGKDAKGDFK--QTHCILQDITEQKRTQDALEKRLLALTRPM 290

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
            + +  H        D+   Q           V+SL    A +     +    L +    
Sbjct: 291 EDPEDVHLQDLFSIKDLQKFQD---EFSAAMNVASLITTPAGEPITAPSNFTRLCSELIR 347

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
           S          + +        G           + +  +          G++L    + 
Sbjct: 348 STEIGRANCHKSDSILGAHHQNGPAVRPCLSGGLWDAGASIIV------GGKHLANWLIG 401

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
           +      V        +  ++         +            + P ++     +   L 
Sbjct: 402 Q------VRDKTQTEESIRAYARTIGADEEE------CAKAFWETPSMNVEEFQRIADLL 449

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
                                                              + +  +  +
Sbjct: 450 Y-----------------------------TFANTLSDMAFQNLQQARFIAERKQAEEAI 480

Query: 448 EIEVMQLCSILEATSDGIAIINREG--IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           +        ++    D I II++EG     S N  + K FG+  ED+L K     +    
Sbjct: 481 KRHQSLHSKLVANIGDVIVIIDQEGVSRYKSAN--IEKHFGWKPEDVLGKSTWDNVHPED 538

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR---IIIKKLPFSSCYSLTMHDIS 562
                 +  ++   +  +T         K+     +    + +   P  +      HDI+
Sbjct: 539 IEGAKKFFADLAR-EPDKTGVLECRYRRKDGAFRWIEFTGVSLFHDPDINGILGNYHDIT 597

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
           E K+ +  L  ++   +   +    F     H+
Sbjct: 598 ERKEAEKSLRESEARFKALHNA--SFGGIAIHD 628



 Score = 98.9 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 27/272 (9%), Positives = 72/272 (26%), Gaps = 11/272 (4%)

Query: 314 YFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
            +            + P    +    G +   N     L      +    +         
Sbjct: 23  EYRSAAQKYQALFHQFPYGITISDENGEILETNVVAEELLGILKDEHESRSINPEDWNII 82

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
                   ++      + R     S  +  +  +      + +     A    +      
Sbjct: 83  RPDGSPMPLEEWAAVVALRENRVVSKVMGVVGKDGG----VAWFNVAAAPLHLKGYGVVI 138

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
                 D    ++ +     +   + E    G   ++  G  +  N+   ++ GY  E++
Sbjct: 139 TYHNISDKIQTEKALTDSEKRFQMLFENAPLGYQSLDENGCFIQVNQTWLQILGYAREEV 198

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
           + +PF+ FL  +             ++   + L        K+   + +    K    + 
Sbjct: 199 IGRPFSDFLHPDWKEHFKENFPRFKAIG--EILGVEFYMRKKDGAFILVSFNGKIGKDAK 256

Query: 553 CYS----LTMHDISEWKQEKNKLSHAKKIAEK 580
                    + DI+E K+ ++ L        +
Sbjct: 257 GDFKQTHCILQDITEQKRTQDALEKRLLALTR 288



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 21/154 (13%), Positives = 51/154 (33%), Gaps = 5/154 (3%)

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490
                   +      +      +  ++      GI I +  G IL TN    +L G   +
Sbjct: 8   EDFARRSAELEKRLGEYRSAAQKYQALFHQFPYGITISDENGEILETNVVAEELLGILKD 67

Query: 491 DILRKPF----TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
           +   +         +  +   +       +++L   + + K+     K+  +    +   
Sbjct: 68  EHESRSINPEDWNIIRPDGSPMPLEEWAAVVALRENRVVSKVMGVVGKDGGVAWFNVAAA 127

Query: 547 KLPFSS-CYSLTMHDISEWKQEKNKLSHAKKIAE 579
            L        +T H+IS+  Q +  L+ ++K  +
Sbjct: 128 PLHLKGYGVVITYHNISDKIQTEKALTDSEKRFQ 161



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 34/308 (11%), Positives = 80/308 (25%), Gaps = 10/308 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G  +  S  + K  G     ++G    D      I+        L R+    G   
Sbjct: 501 IDQEGVSRYKSANIEKHFGWKPEDVLGKSTWDNVHPEDIEGAKKFFADLAREPDKTGVLE 560

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                    +  I+   + ++  + + +G  G    H      +     +  + +F  LH
Sbjct: 561 CRYRRKDGAFRWIEFTGVSLF-HDPDINGILGN--YHDITERKEAEKSLRESEARFKALH 617

Query: 209 EIKKGHSSVEKEKYDIFSQQ-SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
               G  ++  +   +   Q           ++  +       +         +L   E 
Sbjct: 618 NASFGGIAIHDKGVILDCNQGLSQISGHTVEELIGMDGLLLIAEQSRDLVMGNILAGYEK 677

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP---- 323
                             +      Q       E+       +  A  ++ ++       
Sbjct: 678 PYEAMGVRKNGEEFPLRLEARNIPYQGKQVRVVEFRDITESKAAEAEREKLQSQLLQAQK 737

Query: 324 -ETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
            E+V +       +   N+         +   +      +   LS +  A + S +   +
Sbjct: 738 MESVGRLAGGVA-HDFNNMLSVIMGHAEMAMDEMDPANPVFADLSEIFSAAQRSADITRQ 796

Query: 383 PVMLYRSD 390
            +   R  
Sbjct: 797 LLAFARKQ 804


>gi|310643958|ref|YP_003948716.1| sensor protein [Paenibacillus polymyxa SC2]
 gi|309248908|gb|ADO58475.1| Sensor protein [Paenibacillus polymyxa SC2]
          Length = 556

 Score =  279 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 82/321 (25%), Positives = 153/321 (47%), Gaps = 16/321 (4%)

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPFSS 552
           K   +           H      +  +   ++     +  +K E  + + +  K+L   S
Sbjct: 79  KDIPIIFISANSKEAEHLFAGYSAGGIDYMVKPFIPQILKSKIEGFVQMYLTNKRLKTQS 138

Query: 553 CYSLTMHDIS-EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
              + +H  + E ++  ++L  AK+ AE  ++ K++FLA +SHEIRTP+  +IG  +++ 
Sbjct: 139 ---MLLHQKTQELEKMNSELIAAKEAAEIAANAKTEFLAMMSHEIRTPMNGVIGMIDLLM 195

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
                        EYA+ I RS + ++ ++ND+LD +K+ESGKM +   P  L   + E 
Sbjct: 196 ETELQN----DQQEYADIIRRSADALVAVINDILDFTKLESGKMEVEEYPFDLVSCIKEV 251

Query: 672 ISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
            SL  +  N K + +        P +   D+  ++Q+ +N++SNA+ FT  GG + +  +
Sbjct: 252 FSLFTVEVNRKNLELVYFLDEQTPPVLYGDMGRLRQVLINLVSNAVKFTDQGG-VYVFAS 310

Query: 731 HTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
                +    V   V+DTG+G+   ++ +   PF Q+ +S   +  GTGLGL + K +VD
Sbjct: 311 VKERSDNGLTVEFSVKDTGIGIDPAKVGRLFHPFSQLDSSMTRKYGGTGLGLAICKTLVD 370

Query: 787 ANMGKFYIFSTPAKGTLIEII 807
              G   + ++  +G      
Sbjct: 371 MMGGDIRVDTSGEQGVAFHFT 391


>gi|291279597|ref|YP_003496432.1| hypothetical protein DEFDS_1208 [Deferribacter desulfuricans SSM1]
 gi|290754299|dbj|BAI80676.1| hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 816

 Score =  279 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 82/247 (33%), Positives = 134/247 (54%), Gaps = 6/247 (2%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E K +K +L    K   K   +K++F+A +SHE+RTPL +I+G +E+I         +  
Sbjct: 265 ELKVQKIELEEYSKRLNKLQQYKNEFIANMSHELRTPLNSIVGLTELILKNNQ---LDNE 321

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             E    I+ SG  +L+I+ND+LD+SKIESGK++L  E + L E +    ++++   NEK
Sbjct: 322 LKEKLKIINLSGKQLLNIINDILDLSKIESGKIDLEIEEIDLTETIDYVSNIIKPQCNEK 381

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
            I  +  F      I  D   + QI LN+LSN++ +T   G I +       + +I+ V+
Sbjct: 382 NISFKVIFKAKNYLINTDKYKLTQILLNLLSNSVKYTEENGLIELIIE-EDTKYIIIHVK 440

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG+G+    ++   +PF      ++   +GTGLGLPL K +V+   GK  + S   +GT
Sbjct: 441 DTGIGIPEDLMQNLFEPFVT--MGRKFNVQGTGLGLPLTKKLVNLLGGKIAVKSKVGEGT 498

Query: 803 LIEIIFP 809
           +  +  P
Sbjct: 499 IFTVYIP 505


>gi|166713792|ref|ZP_02244999.1| two-component system sensor protein [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 746

 Score =  279 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 71/250 (28%), Positives = 121/250 (48%), Gaps = 10/250 (4%)

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + + +L  AK+ AE  +  K +FLA +SHEIRTPL  II   E+I + +          +
Sbjct: 69  KLEQELLRAKQAAEAATLAKGEFLATMSHEIRTPLNGIIPMLELISSGQLSL----DQRD 124

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
                  S   +L IV+D+LD SK+E+ K+ L     +L E ++  + L+Q  A  +++ 
Sbjct: 125 MLQTATSSSLQLLRIVDDILDYSKLEANKLELEITTFNLRELLNGVVQLLQRTAEGRQLR 184

Query: 686 IRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH----TSNEEVILR 740
           +      ++   +  D   ++Q+  N++ NAI FT  G  + I         +   +  +
Sbjct: 185 LSLDIEPSVRLLVRGDPIRLRQVLGNLIGNAIKFTERGS-VDIQLRRLGETRAQHLLRFQ 243

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           VRDTG+G+   +  +  + F Q   S      GTGLGL + K ++D   G+  + S P +
Sbjct: 244 VRDTGIGIAPDQQARLFRSFAQADASTTRLYGGTGLGLAICKRIIDLMGGRIGVESEPGR 303

Query: 801 GTLIEIIFPL 810
           G+      PL
Sbjct: 304 GSTFWFEIPL 313


>gi|57233723|ref|YP_182237.1| sensory box sensor histidine kinase [Dehalococcoides ethenogenes
           195]
 gi|57224171|gb|AAW39228.1| sensory box sensor histidine kinase [Dehalococcoides ethenogenes
           195]
          Length = 392

 Score =  279 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 82/401 (20%), Positives = 169/401 (42%), Gaps = 29/401 (7%)

Query: 433 IEPEDVDTRINKRK-----MEIEVMQLCSILEATSDGIAII-----NREGIILSTNRAVS 482
           +E +++   + + K     ++ E ++   +    +D I +      N    I   N A  
Sbjct: 1   METDELKEELARLKQCNYTLKKERLKYRELFNRANDAILLFKFNSPNEPVTITEANTAAC 60

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
           K FGY  E+++ K         T       L+++                 K  + + + 
Sbjct: 61  KHFGYTYEELIGKTNLFIDSPETAIRGTEILSDLFEKGHEVL---EIAHKNKNGESIPVE 117

Query: 543 II--IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS-------HKSDFLARVS 593
           I   +  L   +     + DI+  K+ + +L  + +  ++           +  F+  + 
Sbjct: 118 INHKLIYLAGDTMVISVIRDITARKKNEQELRESLEREKQLRETLENEISQRVTFMRALV 177

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HE++TPLT+++  SE++       L       Y   +      +   +++LLDI++ E G
Sbjct: 178 HELKTPLTSMLATSELLSKN----LKEEPNQSYMKCLYAGIQDLNLRIDELLDIARGEIG 233

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713
            + L  EP+++ E + +   +++         +  +  N +P ++AD + +KQ+ LN+L 
Sbjct: 234 LLRLECEPLNIYELLKDVNEIMKPVFESNAQKLTINIQNPLPIMIADYKRLKQVILNLLD 293

Query: 714 NAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
           NA  +T  GG I +    T ++ +I+ VRD G GM+  E     K + +          G
Sbjct: 294 NAAKYTNVGGDIRL-CASTDDKYLIIEVRDNGKGMSLKETSNLFKLYSRSHKKGSPS--G 350

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
            G+GL L+K ++D + G+  + S   +G+      PL   +
Sbjct: 351 LGIGLALSKMIIDLHQGEIRVKSKLGEGSTFTFSIPLRPEA 391


>gi|300088098|ref|YP_003758620.1| PAS/PAC sensor signal transduction histidine kinase
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527831|gb|ADJ26299.1| PAS/PAC sensor signal transduction histidine kinase
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 407

 Score =  279 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 82/379 (21%), Positives = 157/379 (41%), Gaps = 23/379 (6%)

Query: 446 KMEIEVMQLCSILEATSDGIAIIN-REG---IILSTNRAVSKLFGYPVEDILRKPFTVFL 501
            +     +   +    +D I +    +G   ++L  N+  ++  GY ++++ R   + F 
Sbjct: 34  AIRESEEKFRMLFHNANDAIFLWEIHDGFPSVLLEANQVAARRLGYTMDEMPRLRTSDF- 92

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII--IKKLPFSSCYSLTMH 559
              + +        + SL   +     ++   K+     + I   + +L           
Sbjct: 93  ---SLASEEESRANVASLLQSRHGTFESVHKRKDGTTFPVEISSHVFELGEKKVILSIAR 149

Query: 560 DISEWKQEKNKLSHAKKIAEKESSH-------KSDFLARVSHEIRTPLTAIIGFSEVIKN 612
           DIS  K+ + +L+      +            + DF   + HE++TPLT +I   EV+ +
Sbjct: 150 DISLRKKSEQELTALYHREKDLRLALETEISKRIDFTRSLVHELKTPLTPMIASGEVLLD 209

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
              G       +  A  I R    +   +NDLLD ++ E G + +  +P+ +   + +  
Sbjct: 210 ILEG----ENELRLAGNIYRGAINLERRINDLLDFARGEMGVLKVTRQPLDISPILLDLA 265

Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
           + V    + K+  +     + +P + AD   ++QI LN+L+NA  FTP GGQIII     
Sbjct: 266 AEVSPQFDRKQQSLELCLPDRLPAVSADEDRLRQILLNLLTNAGKFTPRGGQIIIGAKV- 324

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
               + L V D G G+   E      P+ ++ +      +G G+GL L K +V  + G+ 
Sbjct: 325 DGNMLQLSVADNGRGIGQAEQASIFVPYYRVEDDIDPN-DGMGIGLTLCKMLVTLHGGEI 383

Query: 793 YIFSTPAKGTLIEIIFPLY 811
           +  S   +G+      PL 
Sbjct: 384 WFESEKGQGSTFYFTLPLA 402



 Score = 41.9 bits (97), Expect = 0.43,   Method: Composition-based stats.
 Identities = 37/297 (12%), Positives = 90/297 (30%), Gaps = 18/297 (6%)

Query: 37  EKSKKENPCHDSFEQSNFTDQNQESVSNTNYL-DSENTFV--FDPIPRTVRFTWNIDAHG 93
           + +K +       ++   T     S +N + + +SE  F   F      + F W I   G
Sbjct: 4   KNAKSQAELIAEIDRLQATADASSSPANCDAIRESEEKFRMLFHNANDAI-FLWEI-HDG 61

Query: 94  ---YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ-NTWYGKTTL 149
               L E ++   + +G    +M  +R  D S     +   ++  LL+ +  T+  ++  
Sbjct: 62  FPSVLLEANQVAARRLGYTMDEMPRLRTSDFSLASEEESRANVASLLQSRHGTF--ESVH 119

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
              +GT    P+++++       ++        I     +          L  +   L  
Sbjct: 120 KRKDGTTF--PVEISSHVFELGEKKVI----LSIARDISLRKKSEQELTALYHREKDLRL 173

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT-SEESS 268
             +   S   +       +   P   M      L +    ++++           + E  
Sbjct: 174 ALETEISKRIDFTRSLVHELKTPLTPMIASGEVLLDILEGENELRLAGNIYRGAINLERR 233

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
           + +  DF    +      +    +     +    +S +      +      +  P  
Sbjct: 234 INDLLDFARGEMGVLKVTRQPLDISPILLDLAAEVSPQFDRKQQSLELCLPDRLPAV 290



 Score = 38.1 bits (87), Expect = 7.1,   Method: Composition-based stats.
 Identities = 17/179 (9%), Positives = 41/179 (22%), Gaps = 19/179 (10%)

Query: 290 GTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-----LFYA 344
             L              + P+      E E              F++   +     L  A
Sbjct: 10  AELIAEIDRLQATADASSSPANCDAIRESEEKFRMLFHNANDAIFLWEIHDGFPSVLLEA 69

Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
           N        Y   +   +    ++        ++ A    +L     T  +   R     
Sbjct: 70  NQVAARRLGYTMDEMPRLR---TSDFSLASEEESRANVASLLQSRHGTFESVHKR----- 121

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI---EVMQLCSILEA 460
                +  +            + +    I  +    + +++++         L   LE 
Sbjct: 122 -KDGTTFPVEISSHVFELGEKKVI--LSIARDISLRKKSEQELTALYHREKDLRLALET 177


>gi|188991136|ref|YP_001903146.1| histidine kinase/response regulator hybrid protein [Xanthomonas
           campestris pv. campestris str. B100]
 gi|167732896|emb|CAP51090.1| histidine kinase/response regulator hybrid protein [Xanthomonas
           campestris pv. campestris]
          Length = 937

 Score =  279 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 110/769 (14%), Positives = 226/769 (29%), Gaps = 72/769 (9%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP--I 152
           +   ++    ++ +     +G  + +V D             L+    +  +    P   
Sbjct: 48  VMLYNDAYIPSMADRHPWALGQPVSEVWDASWEQVAPPFRRCLQTGEGFEQRHVELPMVR 107

Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGI-----VHVNRVDNDPRALGKRL---DKKF 204
            G       + +A PI   +    G    GI     V  +R+        +RL      F
Sbjct: 108 RGVPEMTYWNFSAAPIRGEDGSIVGLFNQGIEITETVRADRLRAAEAERQRRLFEQAPGF 167

Query: 205 SHLHEIKKGHSSVEKEKY-DIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
           + +    +   +     Y  +   +                + +    D + +     + 
Sbjct: 168 TAILHGPEHVFAFVNAAYLRLVGGRDMLGMSVRAGLPELEGQGFYELLDSVYSTGERFVA 227

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF----EYLSHRNHPSLSAYFDEGE 319
           S   ++  Q         Q      +  +++++        +     +         E E
Sbjct: 228 S---AVSIQLQRTGTGAEQRFVDFVYEPVKDDAGRVTGIFVQGFDTTDAQQAQQALRESE 284

Query: 320 NLTPETVDKCPIPFFVYS----------HGNLFYANPSFLLLTKYKSV---DDIEIAGGL 366
                  +     F +               +   NP+F   T    V      E+  G+
Sbjct: 285 KRYRMLFENIDAGFCIAEVKFDAQGQAIDHRMLAVNPAFERHTGLTDVVGKWSSELLPGI 344

Query: 367 STLLDAPKLSDNNAIKPVML-YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
                        + +P+     + R      A L     +  +   +      +     
Sbjct: 345 EQEWHEAYGRVARSGEPMRFEREAARLGRWYDAHLFPAGTHDNHVAMLIVDITPRRRVEQ 404

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA-VSKL 484
           +    N    + V   + +R++          +++T   +   + +  IL+ N A    L
Sbjct: 405 QLRDLNETLEQRVVEALAERRL------FADFVDSTDAAVLACDMDFTILALNTASAEAL 458

Query: 485 ---FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
              +G            +       + +  +    LS D    LE       +  +   +
Sbjct: 459 RLAYGVSAHVGDNLLGLLDGLPEHRAQVARHWGRALSGDEFLVLE-EFGDPARALRHYEV 517

Query: 542 RIIIKKLPFSSCYSL--TMHDISEWKQEKNKLSHAKKIAEKES--SHKSDFLARVSHEIR 597
           R    +              D+++  Q +  L  A++   +             ++H+  
Sbjct: 518 RFSQLRDRHGGRVGAFQVAQDVTDRVQTEASLEVAREALRQSQKMEAVGQLTGGLAHDFN 577

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
             LT I G  E +   R G         Y     ++      + + LL  S+    +  L
Sbjct: 578 NLLTGISGSLE-LMQTRMGQGRFDDVECYIAVAQKAAGRAAALTHRLLAFSR----RQTL 632

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
             +P  ++  ++    L++       I + T     +   L D   ++   LN+  NA  
Sbjct: 633 APKPTDVNALIAGMEDLIR-RTVGPSIELTTVAEQALWPALVDPSQLENALLNLCLNARD 691

Query: 718 FTPSGGQIIISTT-------------HTSNEEVILRVRDTGVG--MTNYELEKAMKPFGQ 762
             P GG+I I T                  E + L V DTG G  M    + +  +PF  
Sbjct: 692 AMPDGGRITIETANSWLNHSATQQNEVPDGEYLSLCVSDTGTGTGMPEDVIARVFEPFFT 751

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
                   GEGTGLGL +       + G+  + ST  +GT + I  P +
Sbjct: 752 TKP----IGEGTGLGLSMIYGFAQQSGGQVRVSSTVGEGTTVCIHVPRH 796



 Score = 65.0 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 40/400 (10%), Positives = 102/400 (25%), Gaps = 47/400 (11%)

Query: 90  DAHGYLKEISEELPKTIGNYA----------FKMIGMRLCDVSDILHIDPNNHIGDLLKR 139
                   ++    + +G              ++ G    ++ D ++      +      
Sbjct: 173 GPEHVFAFVNAAYLRLVGGRDMLGMSVRAGLPELEGQGFYELLDSVYSTGERFVASA--- 229

Query: 140 QNTWYGKTTLWPIEGTN-LYVPIDLAALPIYSRNREFSG--FRGFGIVHVNRVDNDPRAL 196
                  +      GT      +D    P+       +G   +GF            +  
Sbjct: 230 ------VSIQLQRTGTGAEQRFVDFVYEPVKDDAGRVTGIFVQGF----DTTDAQQAQQA 279

Query: 197 GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ---SPPPHLRMKNKVSSLTEYYAHKDDV 253
            +  +K++  L E       + + K+D   Q              + + LT+        
Sbjct: 280 LRESEKRYRMLFENIDAGFCIAEVKFDAQGQAIDHRMLAVNPAFERHTGLTDVVGKWSSE 339

Query: 254 LKTE-KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
           L    +     +        E            + Y   L                 +  
Sbjct: 340 LLPGIEQEWHEAYGRVARSGEPMRFEREAARLGRWYDAHLFPAGTHDNHVAMLIVDITPR 399

Query: 313 AYFDEGENLTPETVDKCPI---------PFFVYSHG-NLFYANPSFLLL-TKYKSVDDIE 361
              ++      ET+++  +           FV S    +   +  F +L     S + + 
Sbjct: 400 RRVEQQLRDLNETLEQRVVEALAERRLFADFVDSTDAAVLACDMDFTILALNTASAEALR 459

Query: 362 IAGGLST--LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT---FI 416
           +A G+S     +   L D        + R     ++       ++   + + A+      
Sbjct: 460 LAYGVSAHVGDNLLGLLDGLPEHRAQVARHWGRALSGD-EFLVLEEFGDPARALRHYEVR 518

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
             +  ++    +    +  +  D    +  +E+    L  
Sbjct: 519 FSQLRDRHGGRVGAFQVAQDVTDRVQTEASLEVAREALRQ 558



 Score = 46.9 bits (110), Expect = 0.015,   Method: Composition-based stats.
 Identities = 43/428 (10%), Positives = 109/428 (25%), Gaps = 62/428 (14%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151
              +  ++    +  G     ++G    ++   +  + +   G +        G+   + 
Sbjct: 313 DHRMLAVNPAFERHTGLT--DVVGKWSSELLPGIEQEWHEAYGRV-----ARSGEPMRFE 365

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
            E   L    D    P  + +   +      ++             + L++         
Sbjct: 366 REAARLGRWYDAHLFPAGTHDNHVA-----MLIVDITPRRRVEQQLRDLNETLEQRVVEA 420

Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271
                +  +  D  S  +      M   + +L    A    +       +  +    L  
Sbjct: 421 LAERRLFADFVD--STDAAVLACDMDFTILALNTASAEALRLAYGVSAHVGDNLLGLLDG 478

Query: 272 QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI 331
             + H   + ++  +   G               R        F +  +     V    +
Sbjct: 479 LPE-HRAQVARHWGRALSGD--EFLVLEEFGDPARALRHYEVRFSQLRDRHGGRVGAFQV 535

Query: 332 PFFVYS----HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
              V        +L  A  +     K ++V  +   GGL+   +      + +++ +   
Sbjct: 536 AQDVTDRVQTEASLEVAREALRQSQKMEAVGQL--TGGLAHDFNNLLTGISGSLELMQTR 593

Query: 388 RSDRTCIAASARLHTIQWNRE-----NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR- 441
                       +   Q             + F   +     P ++       ED+  R 
Sbjct: 594 MGQGRFDDVECYIAVAQKAAGRAAALTHRLLAFSRRQTLAPKPTDVNALIAGMEDLIRRT 653

Query: 442 ---------INKRKM--------EIEVMQLCSIL---EATSDGIAIINREGIIL------ 475
                    + ++ +        ++E   L   L   +A  DG       G I       
Sbjct: 654 VGPSIELTTVAEQALWPALVDPSQLENALLNLCLNARDAMPDG-------GRITIETANS 706

Query: 476 STNRAVSK 483
             N + ++
Sbjct: 707 WLNHSATQ 714


>gi|149174808|ref|ZP_01853433.1| sensory box histidine kinase [Planctomyces maris DSM 8797]
 gi|148846502|gb|EDL60840.1| sensory box histidine kinase [Planctomyces maris DSM 8797]
          Length = 654

 Score =  279 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 74/373 (19%), Positives = 146/373 (39%), Gaps = 20/373 (5%)

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
            Q   ++E +   + +IN+E  I+  N A S  FGY  E++L +     L Q        
Sbjct: 274 EQFELLIEESPVAMIMINQEREIIIANPATSNFFGYTKEELLGEKIEKLLPQRYRPQHPQ 333

Query: 512 YLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKL---PFSSCYSLTMHDISEWKQ 566
            +         + L+  +  +G   +     + I I  +           ++ DIS+WK 
Sbjct: 334 QVASFFKDGKSRHLDVGRDLIGLHGDGHEFPVEIFINYVQTTRSGPAVICSVVDISKWKN 393

Query: 567 EKNKLSHAKKIAEKESSHKS-------DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
            + +     +  ++ +            F    SH+++ PL  +    + +    +    
Sbjct: 394 AEAENRRQSEELKRSNLALESINSELEQFAYIASHDLQEPLRKVASCCQ-MLKDDYEDKL 452

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
           +     +  Y       +  +VNDLL+ S+I  G +    +P    +A  EA+  +    
Sbjct: 453 DDDGRMWIGYAIEGAVRMRQLVNDLLEFSRI--GTLGYDPQPTDAHQACQEALYNLSDSI 510

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
            + +  I       +P +LAD + + Q+  N++ N I +      +I         +   
Sbjct: 511 EQNKAQIICR---PLPVVLADKQRLIQLFQNLIGNGIKYCREELTVIEIGAEPDGSQWKF 567

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            ++D G+G+     E+  + F ++    +    GTG+GL + K +VD + GK ++ S   
Sbjct: 568 YIKDNGIGIAPEFHERIFQIFQRLH--LKNEYSGTGIGLAICKKVVDKSGGKIWLESQVG 625

Query: 800 KGTLIEIIFPLYD 812
           KGT      P  D
Sbjct: 626 KGTTFYFTLPAED 638


>gi|15888688|ref|NP_354369.1| two component sensor kinase [Agrobacterium tumefaciens str. C58]
 gi|15156426|gb|AAK87154.1| two component sensor kinase [Agrobacterium tumefaciens str. C58]
          Length = 861

 Score =  279 bits (715), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 103/647 (15%), Positives = 202/647 (31%), Gaps = 51/647 (7%)

Query: 190 DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH 249
            +D  A           L    KGH       Y   S  +    ++    + S +     
Sbjct: 83  QSDGLARRFLSAHPEGTLITDAKGHMVYANATYCRMSGTTKASDIQSLETLLSRSRESTE 142

Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
               L           E     +          +  +     L++   E        +  
Sbjct: 143 ALYRLINVLREGRDGYEEFRLLKPLGDDTGAGPHWYRLKGRVLKDAGGEGLHVFQIADIT 202

Query: 310 SLSAYFDEGENLTPET---VDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365
                 +            +D  P  FF     G + Y N +               +  
Sbjct: 203 PEREDQERFFRELQNAIDYLDHAPAGFFSASRKGEIVYLNATLSEWLGIDLAQFSPGSMT 262

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
           +S ++    ++  +++ P    +     +    R    + N ++  A         +  P
Sbjct: 263 ISDIVAGEGMALIDSVHPQGTAKRT-EILDLDMR----RVNGQSMPARLVHQVTAKDGAP 317

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
                  +      ++  +       M+       T   IA ++ EG IL  N    KLF
Sbjct: 318 GESRTIVLMR----SKGQEDTESSSAMRFTRFFNNTPMAIASLDGEGRILRINAPFLKLF 373

Query: 486 -GYPVEDILRK--PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
            G    D + +       L  N    +   L E             +   + E +     
Sbjct: 374 SGVVGRDDIDRGVALETVLHDNEKPRLEQALAEA-KDRQGDIAPFDSRHPSDEGRHFRFY 432

Query: 543 IIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
           +                +   +++E K  + +++  +K+     +        ++H+   
Sbjct: 433 VNAVIDQDDEAPEEVAIVYAIEVTEQKALETQMAQTQKM-----NAVGTLAGGIAHDFNN 487

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
            LTAI+  S+ +  Q      +P + +    I R+ N    +V  LL  S+    K  + 
Sbjct: 488 VLTAILLSSDHLLLQARPA--DPSFADLME-IKRNANRAAVLVRQLLAFSR----KQTMR 540

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718
              ++L + + +   LV    +   + +   +  ++  +  DL   +Q+ +N+  NA   
Sbjct: 541 PAVLNLTDVIGDLRMLVDRLISGTNVKLEVDYGRDLWPVKTDLSQFEQVLINLCVNARDA 600

Query: 719 TPSGGQIIISTTHTS--------------NEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764
            P GG+I I T +                 + V++ V D G G+    ++K  +PF    
Sbjct: 601 MPDGGKITIRTRNVDEKEIAALGRPEFPAEDMVMVEVADNGTGIPPEIMDKIFEPFFTTK 660

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
                 G+GTGLGL +   +V  + G  Y  S   KGT   I  P +
Sbjct: 661 ----EVGKGTGLGLSMVYGIVKQSGGYIYPESEVGKGTAFRIYLPRH 703



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/383 (10%), Positives = 91/383 (23%), Gaps = 24/383 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN---NHIGDLLKRQNTWYG 145
            DA G++   +    +  G      I   L  +              I  L + ++ +  
Sbjct: 102 TDAKGHMVYANATYCRMSGTTKASDI-QSLETLLSRSRESTEALYRLINVLREGRDGYEE 160

Query: 146 KTTLWPI--EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
              L P+  +         L    +     E  G   F I  +     D     + L   
Sbjct: 161 FRLLKPLGDDTGAGPHWYRLKGRVLKDAGGE--GLHVFQIADITPEREDQERFFRELQNA 218

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
             +L     G  S  ++   ++   +    L +   ++  +       D++  E   L+ 
Sbjct: 219 IDYLDHAPAGFFSASRKGEIVYLNATLSEWLGID--LAQFSPGSMTISDIVAGEGMALID 276

Query: 264 SEESSLPE------QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
           S               D   +N      +        +                    + 
Sbjct: 277 SVHPQGTAKRTEILDLDMRRVNGQSMPARLVHQVTAKDGAPGESRTIVLMRSKGQEDTES 336

Query: 318 GEN-LTPETVDKCPIPFFVYSH-GNLFYANPSFLLLT-KYKSVDDIEIAGGLSTLLDAPK 374
                     +  P+        G +   N  FL L       DDI+    L T+L   +
Sbjct: 337 SSAMRFTRFFNNTPMAIASLDGEGRILRINAPFLKLFSGVVGRDDIDRGVALETVLHDNE 396

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
                                  +R      +               +            
Sbjct: 397 KPRLE-QALAEAKDRQGDIAPFDSRH---PSDEGRHFRFYVNAVIDQDDEAPEEVAIVYA 452

Query: 435 PEDVDTRINKRKMEIEVMQLCSI 457
            E  + +  + +M  +  ++ ++
Sbjct: 453 IEVTEQKALETQM-AQTQKMNAV 474


>gi|56475528|ref|YP_157117.1| fusion Na-dependent permease/histidine kinase domain-containing
           protein [Aromatoleum aromaticum EbN1]
 gi|56311571|emb|CAI06216.1| Fusion protein of probable Na-dependent permease domain and
           histidine kinase domain of putative two-component sensor
           [Aromatoleum aromaticum EbN1]
          Length = 918

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 81/343 (23%), Positives = 155/343 (45%), Gaps = 13/343 (3%)

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
               + F    +   ++      +    + +  +    L+  +     ++ + S  +E+ 
Sbjct: 577 ARAERAF---TDYARQRGLAGIDQIQPDAGLVQFAETQLAGAIGSASARVMVASVVQEEP 633

Query: 539 LSLRIIIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSH 594
           L L  ++  L  +S      H++ E  +       +L  A +  ++    K DF++ VSH
Sbjct: 634 LGLDEVMDILDEASQVRAYSHELEEKSRALESATAELRAANERLKELDRLKDDFMSSVSH 693

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           E+RTPLT+I  FSE++ +     L +   + +   I      +  +VN +LD++KIESG 
Sbjct: 694 ELRTPLTSIRAFSEMLLDDPDIALPD--RMRFLGIIVSETERLTRLVNQVLDLAKIESGH 751

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714
              H   + +   V +A+        ++   +     +  P + AD   + Q+ LN+LSN
Sbjct: 752 AEWHNSDIDMRALVEQAVDTTAQLFRDRGATVELVLPDEAPHLKADHDRLVQVMLNLLSN 811

Query: 715 AIHFTPSG-GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
           A  F P G G+I ++    +  +V + V D G G+         + F Q  + +    +G
Sbjct: 812 AAKFVPQGAGRIRVALKSEA-GQVRVEVSDNGPGIPPELHGVIFEKFRQGGDERSR-PQG 869

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           TGLGLP+++ +V+   G+ ++ S P  GT+   + PL+   HP
Sbjct: 870 TGLGLPISRQIVEHFGGRLWVESPPGHGTVFTFVLPLH-APHP 911


>gi|83747136|ref|ZP_00944180.1| Hypothetical Protein RRSL_03094 [Ralstonia solanacearum UW551]
 gi|207738543|ref|YP_002256936.1| composite two-component regulatory protein (sensor kinase and
           response regulator hybrid) [Ralstonia solanacearum
           IPO1609]
 gi|83726266|gb|EAP73400.1| Hypothetical Protein RRSL_03094 [Ralstonia solanacearum UW551]
 gi|206591911|emb|CAQ58817.1| composite two-component regulatory protein (sensor kinase and
           response regulator hybrid) [Ralstonia solanacearum
           IPO1609]
          Length = 797

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 105/634 (16%), Positives = 216/634 (34%), Gaps = 48/634 (7%)

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           ++  G               +P      + +   L   +      L      L    +  
Sbjct: 35  DLLDGTRLHVSAAARQAWDVAPDTLCGSRERW--LAHVHPGDHAALGAAWQGLAQGHD-- 90

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS----HRNHPSLSAYFDEGENLTPE 324
              +  +  I+  ++  ++    L      +   +             A   E E     
Sbjct: 91  FALEYRWIGIDGAEHRVRECGYRLPAQDGAATHAVGVVEDMTQRLRTLAELTESEFQLQW 150

Query: 325 TVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
             +  P P   +     + +AN ++       +VD +        + D         +  
Sbjct: 151 LAESIPFPIVQLGPDHRIRFANHAYAQRFGLPAVDLLGR-----HVRDLMGHDAYQRVLA 205

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
            ++       +     L       +    +      +     + +    I  +  + +  
Sbjct: 206 HLMKGFAGQRVDFEMEL-EYPPAGQGRRFIHAAYTPQRGSDGKVVALVCIIEDITERKEA 264

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF-LE 502
           +R+      +  +++E   D IA ++     +  NRAV++ FG P  +++ +  +   L 
Sbjct: 265 ERERFRHQREFVTLMENAPDIIARLDPALRCVYINRAVTEAFGVPSGELIGRTLSDSGLP 324

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGS-TKEEKLLSLRIIIKKLPFSSC----YSLT 557
                 +             Q L        T+  ++      +              L 
Sbjct: 325 ARVAQPLEAAAQCAFDTGSEQALTLHLKADATRPPRVAHYNARVIPEADRHGDIESALLI 384

Query: 558 MHDISEWKQEKNKLS-------HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
           ++D++E  + + +          A+  AE  +  +  FLA VSHE+R+PL  I  ++ V+
Sbjct: 385 IYDVTERTEAERERDALLLREQAARAQAEAAAHARDQFLAVVSHELRSPLNGIQSWAYVL 444

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
           +NQ     G        + I       + ++ DLLD +++ SGK+ L  +P  L  A+  
Sbjct: 445 ENQLAD--GPELVRRALSGIRTGVAQQVRLIEDLLDATRVMSGKLRLTRQPFPLRTALER 502

Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
           A+  V+  A E+RI +  +++ +   I  D   ++QI  N+LSNAI FT  GG + ++  
Sbjct: 503 ALDSVRAQAAERRITLHEAWSLDAQEIDGDTDRIQQIVWNLLSNAIKFTQEGGDVWLAAD 562

Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG--------EGTGLGLPLAK 782
            +  E   + VRD G G+    +     PF Q   S   R                   K
Sbjct: 563 MS-GEAARIVVRDNGRGIAPAFVPHLFDPFRQADGSYTRRTGGLGLGLAL--------VK 613

Query: 783 AMVDANMGKFYIFS-TPAKGTLIEIIFPLYDTSH 815
            + + + G  +  S    +G    +  PL++ + 
Sbjct: 614 RLTELHGGLVHAHSDGEQRGATFAVYLPLHEGAE 647



 Score = 68.5 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 33/401 (8%), Positives = 86/401 (21%), Gaps = 18/401 (4%)

Query: 56  DQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIG 115
           D  Q   +     +SE    +            +     ++  +    +  G  A  ++G
Sbjct: 130 DMTQRLRTLAELTESEFQLQWLAESIPFPIV-QLGPDHRIRFANHAYAQRFGLPAVDLLG 188

Query: 116 MRLCDV-SDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNRE 174
             + D+     +     H+      Q   +     +P  G      I  A  P    + +
Sbjct: 189 RHVRDLMGHDAYQRVLAHLMKGFAGQRVDFEMELEYPPAGQGRRF-IHAAYTPQRGSDGK 247

Query: 175 FSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP---- 230
                   I+       +      R  ++F  L E      +                  
Sbjct: 248 VVAL--VCIIEDITERKEAERERFRHQREFVTLMENAPDIIARLDPALRCVYINRAVTEA 305

Query: 231 --PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288
              P   +  +  S +   A     L+        +                        
Sbjct: 306 FGVPSGELIGRTLSDSGLPARVAQPLEAAAQCAFDTGSEQALTLHLKADATRPPRVAHYN 365

Query: 289 FGTL--QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANP 346
              +   +   +    L      +     +   +                      +A  
Sbjct: 366 ARVIPEADRHGDIESALLIIYDVTERTEAERERDAL-----LLREQAARAQAEAAAHARD 420

Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
            FL +  ++    +      + +L+         ++  +                 +   
Sbjct: 421 QFLAVVSHELRSPLNGIQSWAYVLENQLADGPELVRRALSGIRTGVAQQVRLIEDLLDAT 480

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
           R  S  +         +       + +  +  + RI   + 
Sbjct: 481 RVMSGKLRLTRQPFPLRTALERALDSVRAQAAERRITLHEA 521



 Score = 55.4 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/257 (9%), Positives = 66/257 (25%), Gaps = 13/257 (5%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
            +D       I+  + +  G  + ++IG  L D      +             +T   + 
Sbjct: 288 RLDPALRCVYINRAVTEAFGVPSGELIGRTLSDSGLPARVAQPLEAAAQCA-FDTGSEQA 346

Query: 148 TLWPIEGTNLYVPIDLAA----LPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
               ++      P         +P   R+ +        I++      +       L  +
Sbjct: 347 LTLHLKADATRPPRVAHYNARVIPEADRHGDIE--SALLIIYDVTERTEAERERDALLLR 404

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
                   +  +    +   + S +   P   +++    L    A   ++++     + T
Sbjct: 405 EQAARAQAEAAAHARDQFLAVVSHELRSPLNGIQSWAYVLENQLADGPELVRRALSGIRT 464

Query: 264 SEESSLPEQEDFHTI------NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
                +   ED           L    +     T    + +S    +     +L   +  
Sbjct: 465 GVAQQVRLIEDLLDATRVMSGKLRLTRQPFPLRTALERALDSVRAQAAERRITLHEAWSL 524

Query: 318 GENLTPETVDKCPIPFF 334
                    D+     +
Sbjct: 525 DAQEIDGDTDRIQQIVW 541


>gi|163760024|ref|ZP_02167108.1| Hybrid sensory histidine kinase [Hoeflea phototrophica DFL-43]
 gi|162282982|gb|EDQ33269.1| Hybrid sensory histidine kinase [Hoeflea phototrophica DFL-43]
          Length = 848

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 80/288 (27%), Positives = 141/288 (48%), Gaps = 22/288 (7%)

Query: 537 KLLSLRIIIKKLPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
           K L + + I  +     +     +    IS  +Q+  +   A   A+     KS+FLA +
Sbjct: 226 KFLVVTMAILLVLGGGVFVPIDIIIRQMISRLQQKTKETDLALTKAKAADRAKSEFLATM 285

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHEIRTP+  ++G +E++           R   + + I +SGN +L+I+ND+LD SKI++
Sbjct: 286 SHEIRTPMNGVLGMAELLTRTDLDT----RQRTFTDVILKSGNALLEIINDILDFSKIDA 341

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNI 711
           G+M L  +P SL +   +  +L+     EK I +    A  +P +++ D   V+QI  N+
Sbjct: 342 GQMVLAPKPFSLVDTAEDVATLMSSRVVEKDIELAVRIAPGLPDQLIGDPGRVRQILTNL 401

Query: 712 LSNAIHFTPSGGQIIISTTHTS----NEE--------VILRVRDTGVGMTNYELEKAMKP 759
           + NA+ FT  G  +++          + E        + + V DTG+G+   +++     
Sbjct: 402 VGNAVKFTEQG-HVMVEINWKDVEPEDGEGASSRRLALSISVSDTGIGIPPDKIDAVFDK 460

Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           F Q+  S   + EGTGLGL +A  +V+   G+  + ST  +G+     
Sbjct: 461 FSQVDGSSTRKHEGTGLGLAIATRLVELMGGQIKLESTVGEGSTFSFT 508


>gi|329923873|ref|ZP_08279236.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Paenibacillus sp. HGF5]
 gi|328941046|gb|EGG37350.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Paenibacillus sp. HGF5]
          Length = 893

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 78/264 (29%), Positives = 127/264 (48%), Gaps = 11/264 (4%)

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
             ++L    K  EK S +KS FLA +SHE+RTPL +++  S+++   + G L       Y
Sbjct: 479 AASELEKYAKELEKSSKYKSQFLANMSHELRTPLNSMLILSQILAENKQGNLTEEEQ-HY 537

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
           A  I  SG+ +L+++ND+LD+SK+E+GKM +  + V+L E            A  K +  
Sbjct: 538 ATVIHNSGSELLNLINDILDLSKVEAGKMQIEMDLVNLTELPELMQGYFSKSAESKNLEF 597

Query: 687 RTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQ---------IIISTTHTSNEE 736
               ++++P  + +D   + QI  N+LSNAI FT SG           I+ S    S + 
Sbjct: 598 DIEMSDDLPDMMYSDGMRLHQILRNLLSNAIKFTESGSVKLRVKKMNSIVTSDFIISGDV 657

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           +   V DTG+G+    L+   + F Q   +   +  GTGLGL ++  +     G   + S
Sbjct: 658 IAFSVEDTGIGIAAEHLQPIFEAFQQGEETTARKFGGTGLGLSISLHLAKLLGGYITVES 717

Query: 797 TPAKGTLIEIIFPLYDTSHPHDCI 820
               G+   +  PL       D +
Sbjct: 718 EEGIGSTFILYLPLVTEGGEADSL 741


>gi|238795584|ref|ZP_04639099.1| Phosphate regulon sensor protein phoR [Yersinia mollaretii ATCC
           43969]
 gi|238720703|gb|EEQ12504.1| Phosphate regulon sensor protein phoR [Yersinia mollaretii ATCC
           43969]
          Length = 424

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 67/358 (18%), Positives = 132/358 (36%), Gaps = 37/358 (10%)

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
           +  S  E+  D + I   +G I   N    +L G+   +   +     L     S     
Sbjct: 99  RFRSGAESLPDAVVITTIDGNIFWCNGLAQQLLGFRWPEDNGQHILNLLRYPEFSQYL-- 156

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572
                    +QT  +           +  R++           +   D+++ +Q +    
Sbjct: 157 --------QQQTFSRPLTLQLNNGYYVEFRVMPY---SEGQLLMVARDVTQMRQLEG--- 202

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
                       + +F A VSHE+RTPLT + G+ E++ +Q        +       +  
Sbjct: 203 -----------ARRNFFANVSHELRTPLTVLQGYLEMMHDQELAGPLRDKA---LGTMQE 248

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN-EKRILIRTSFA 691
               +  +V  LL +S+IE+       E V +   +      VQ  +N    I  R +  
Sbjct: 249 QTKRMDGLVKQLLTLSRIEAAPNVDMNERVDIPLMLKVLQHEVQALSNGRHEITFRVN-- 306

Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751
               ++  +   ++    N++ NA++ TP G +I +    T       +V D G G+   
Sbjct: 307 -EQLKVFGNEDQLRSAVSNLVYNAVNHTPEGTKIEVCWQQTPQG-AQFQVSDNGPGIGPE 364

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            + +  + F ++  ++  +  G+GLGL + K  +  +  +  + S    GT    I P
Sbjct: 365 HVPRLTERFYRVDKARSRQTGGSGLGLAIVKHALSHHDARLEVMSEIGLGTRF--ILP 420


>gi|330895745|gb|EGH28034.1| PAS protein [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 289

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 84/276 (30%), Positives = 135/276 (48%), Gaps = 24/276 (8%)

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
             D++E K+ +  L       E  S  KS+FLA +SHE+RTPL A+IGFSE +++   G 
Sbjct: 2   ARDVTERKRFERTLEEKNIELEHASHMKSEFLATMSHELRTPLNAVIGFSEALRDGMVGD 61

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
           + +     Y   I  SG  +L ++ND+LD+SK+E+G M L  E V LDE +S ++ +V+ 
Sbjct: 62  MTDA-QRRYIGDIFNSGQHLLSLINDILDLSKVEAGMMTLELESVDLDELLSNSLLIVRE 120

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS---- 733
            A  + I ++         +  D R  KQI  N+L+NA+ F+  GG + ++         
Sbjct: 121 QAALQHIQLKLETEAEFGELELDRRKTKQIVYNLLANAVKFSEPGGWVTLAVRLVPASQA 180

Query: 734 -------------------NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
                               + + L V DTG+G+   ++ K  K F QI +    + EGT
Sbjct: 181 GLIDGDWPTYGFTLPSGDCEQFLELSVSDTGIGIAQSDMNKLFKAFSQIDSGLARKFEGT 240

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           GLGL + K + + + G   + S    G    +  P+
Sbjct: 241 GLGLAMVKQLTELHGGCVAVASVKDLGARFVVWLPI 276


>gi|328473673|gb|EGF44508.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus
           10329]
          Length = 576

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 96/381 (25%), Positives = 171/381 (44%), Gaps = 33/381 (8%)

Query: 463 DGIAIINREGI-----ILSTNRAV---SKLFGYPVEDILRKPFTVFLEQNTPSVMNH--- 511
           D I I   +       ++STN        L G  +E  L     +  E        +   
Sbjct: 70  DFIVITRDDSRYPFKTLISTNSVFDKVEWLHGNTMERALNGECILLFEPAKLLEFENLNS 129

Query: 512 ----YLTEILSLDLRQ-TLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQ 566
               ++  ++   +R    + I L    ++   S+        F       + DI   ++
Sbjct: 130 FVKTHVNSVILTGIRSEVTQSIILLIGAQKGHFSIENKETLRRFRPLIERAVIDIETKEK 189

Query: 567 EKN-------KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
            +        +L+ A++ AE  +  KS+FLA +SHEIRTPL +++G  ++++        
Sbjct: 190 LQRIVEVRTTQLARAREEAELANQSKSEFLAMMSHEIRTPLNSVLGMLDILRQSTL---- 245

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
           +    +  N ++ S  L+L I++D+LD+SKIESG   L+ + + L++ V+  IS  +  A
Sbjct: 246 SDEQFDALNQMECSAELLLAIISDILDLSKIESGSFQLNEQWIHLNDTVTFVISQQKQVA 305

Query: 680 NEKRILIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738
             K +        ++  +   D   + QI  N++ NAI FT SG  + +S     N+EV+
Sbjct: 306 ITKNLSFNFDCQISSDKQYWIDSTRLSQILFNLIGNAIKFTDSGS-VSVSVA-EENDEVV 363

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           + + DTG+G++  +       F Q   S   R  GTGLGL + K +V+   G+  + S  
Sbjct: 364 VSISDTGIGISRAKQAHLFTAFHQGDRSITRRFGGTGLGLAITKHLVEMMRGEISVKSRE 423

Query: 799 AKGTLIEIIFPL---YDTSHP 816
            +G+   I  P+   Y+ S P
Sbjct: 424 NEGSDFTIRIPVLTRYNQSRP 444


>gi|89889870|ref|ZP_01201381.1| putative sensory transduction histidine kinase, PAS fold
           [Flavobacteria bacterium BBFL7]
 gi|89518143|gb|EAS20799.1| putative sensory transduction histidine kinase, PAS fold
           [Flavobacteria bacterium BBFL7]
          Length = 659

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 85/523 (16%), Positives = 179/523 (34%), Gaps = 35/523 (6%)

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLT--K 353
                               E EN     +        +    G +   N  F       
Sbjct: 159 AAQGIVRDITKSDEDEKKLIESENRLSTLILNLENAVLLEDENGKIVLTNHKFCEYFEIP 218

Query: 354 YKSVDDIEIAGGLST-----LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
            K  + +       +     L D P        + + L +              +  N  
Sbjct: 219 LKPEEIVGNDYHKISDNYKFLFDDPDYFIQRVDEILSLKKM--------VIGDELIMNNG 270

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468
             L   FIP  +++             +    R   + +E +  +  SI+     G+  +
Sbjct: 271 RILERDFIPIIESD---NYKGHLWSYRDVTLKRSYSKSLEAQKQKYSSIIANMHLGLVEV 327

Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528
           + E  I+  N++ +++ GY  E+++ +  +     +    +    T         + E +
Sbjct: 328 DTEEKIIMVNQSFTQMSGYTEEEVVGRKASSLFLDSDDVHIFKEQTRKRLRGESSSYEVV 387

Query: 529 TLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
               + E +   +          +         DI++ K  + +         K +    
Sbjct: 388 VNIKSNERRHWLISGAPNYDLEGNVTGSIGIHLDITDLKNLEIQKELLLAQLAKSNDELH 447

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
           ++   VSH++++PL +I      +K        +   ++  + I+ +   +  ++ D+LD
Sbjct: 448 EYAHIVSHDLKSPLRSIDALVNWLKADNLDKF-DEISLKNLSLIEETLEKMEQLIGDILD 506

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706
            S + S      F  +  +E V   + L+++      I I  +    +P+I  D   V Q
Sbjct: 507 YSSLNSSNE--EFTEIDCNELV---VDLIKVIYVPNHIEI--NLKGILPKINGDRTKVNQ 559

Query: 707 IALNILSNAIHFTP-SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           +  N+LSNA+ F     G I +S     +     +++D G+G+     +K  K F     
Sbjct: 560 LFQNLLSNAVKFIDKEKGIIEVSC-IELDNHYQFQIKDNGIGIDPAFHDKIFKIFH---- 614

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           +     + TG+GL + K +VD + GK ++ S   +GT      
Sbjct: 615 ALNKNKDSTGIGLSIVKKIVDLHQGKIWLESKVGEGTTFFFTL 657



 Score = 74.3 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 45/331 (13%), Positives = 101/331 (30%), Gaps = 35/331 (10%)

Query: 276 HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH--PSLSAYFDEGENLTPETVDKCPIPF 333
             +   +  +KQ    L+  + E +E      H    L    DE  +      +     +
Sbjct: 11  RALERERAARKQAEKILEQKAAELYELTQKLRHSNEKLEVLIDEKTSELNGVFENIVDAY 70

Query: 334 FVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
            V    GN+   N   + L       D          +  P   +N       L   + +
Sbjct: 71  VVTDLYGNVLKMNNPAIDLL----EADFTNESINLMDIVMPSEYENVLELFQKLLH-NGS 125

Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
                 ++ T     ++   +        +   +     GI  +   +  +++K+     
Sbjct: 126 LTDVHVKIQT---KNQHLKLVHINCSIIYDAQGKAKAAQGIVRDITKSDEDEKKLIESEN 182

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP--VEDILRKPFTVF-----LEQNT 505
           +L +++    + + + +  G I+ TN    + F  P   E+I+   +           + 
Sbjct: 183 RLSTLILNLENAVLLEDENGKIVLTNHKFCEYFEIPLKPEEIVGNDYHKISDNYKFLFDD 242

Query: 506 PSVMNHYLTEILSLDLRQTLEKITL---GSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
           P      + EILSL     +    +   G   E   +     I +      +  +  D++
Sbjct: 243 PDYFIQRVDEILSLKK-MVIGDELIMNNGRILERDFIP----IIESDNYKGHLWSYRDVT 297

Query: 563 EWKQEKNKLSHAKKIAEKESSHK-SDFLARV 592
                   L  +   + +    K S  +A +
Sbjct: 298 --------LKRSYSKSLEAQKQKYSSIIANM 320



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 12/136 (8%), Positives = 43/136 (31%), Gaps = 10/136 (7%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
            +D    +  +++   +  G    +++G +   +     +D ++      + +    G++
Sbjct: 326 EVDTEEKIIMVNQSFTQMSGYTEEEVVGRKASSL----FLDSDDVHIFKEQTRKRLRGES 381

Query: 148 TLWPIEGTN----LYVPIDLAALPIYSRNREFSGFRGFGI-VHVNRVDNDPRALGKRLDK 202
           + + +            + ++  P Y      +G  G  + +   +     + L      
Sbjct: 382 SSYEVVVNIKSNERRHWL-ISGAPNYDLEGNVTGSIGIHLDITDLKNLEIQKELLLAQLA 440

Query: 203 KFSHLHEIKKGHSSVE 218
           K +          S +
Sbjct: 441 KSNDELHEYAHIVSHD 456


>gi|15893728|ref|NP_347077.1| sensory transduction histidine kinase [Clostridium acetobutylicum
           ATCC 824]
 gi|15023292|gb|AAK78417.1|AE007558_7 Sensory transduction histidine kinase [Clostridium acetobutylicum
           ATCC 824]
 gi|325507851|gb|ADZ19487.1| Sensory transduction histidine kinase [Clostridium acetobutylicum
           EA 2018]
          Length = 637

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 82/504 (16%), Positives = 187/504 (37%), Gaps = 32/504 (6%)

Query: 322 TPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
               +D  P    +   +G     N         K              +      D   
Sbjct: 127 IDRIIDSIPFLVIIKNENGKHIKVNKEAREFYGVKEE------------IKKDNKLDKYN 174

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
              +   + +             + N E +L +  IP    N          I+ +    
Sbjct: 175 YSELNNLKIESESSKTFCEQVLNKDNEERTLYVIAIPVTINNNE---KFTVIIKSDIT-- 229

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV-EDILRKPFTV 499
           +    ++E     L ++ ++  + I I +    ++  N+   +LFG    ++I+ K +T 
Sbjct: 230 KFQNNQIENNGENLKNLFKSVPEAIFIHD-NTKVIYLNKVAKELFGCEKLQEIIGKDYTN 288

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH 559
            ++    ++     + +   +      +I          +   +            + + 
Sbjct: 289 LIKI--QNISEDKKSNLNGTEYNIRSAEIVRTCDNRVLKVEFLVEKYLYRDKEIELVVVW 346

Query: 560 DISEWKQEKNKLSHAKKIAEKESS------HKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
           D+    + +   +   +  +  +        K+ F+  +SHE+RTPL  I+   +V+   
Sbjct: 347 DMEYKTKMEELKNRMSEKNDFLNKVLYYSNAKTQFMGTISHELRTPLNIILSALQVMDLY 406

Query: 614 RFGPLGNPR---YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
                   +   Y +Y+  + ++G  +L ++N+ +DI++IE G   L+F   ++   V +
Sbjct: 407 ANYGDLEEKCRVYEKYSVVMKQNGYRLLKMINNFMDITQIEDGARKLNFVQGNIVTIVED 466

Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
               V  +  +K   I          ++ D   +++I LN+LSNA+ FT     I ++  
Sbjct: 467 VTLAVAAFLKDKGKNIIFDTDVEEKIMIFDKEKIERIVLNLLSNAVKFTGKDANIRVAI- 525

Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
           H     + + V D G+G+   + +   + F Q+  +   + EG+G+GL + K +V+ + G
Sbjct: 526 HDVGSNIQISVEDNGMGIPEDKKKMIFERFFQLDKTFTRKNEGSGIGLSIVKLLVELHDG 585

Query: 791 KFYIFSTPAKGTLIEIIFPLYDTS 814
              + S    G+   +  P+  ++
Sbjct: 586 TIEVKSKVGIGSEFTVKLPVRKSN 609


>gi|326791209|ref|YP_004309030.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium lentocellum DSM 5427]
 gi|326541973|gb|ADZ83832.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium lentocellum DSM 5427]
          Length = 475

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 60/251 (23%), Positives = 120/251 (47%), Gaps = 4/251 (1%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E  +  N  +H     ++    + +F++ VSHE++TPL++I   +E +  Q   P+    
Sbjct: 223 EIAELGNAFNHMTDQLQRVEQSRQEFVSNVSHELKTPLSSIKVLTESLMFQEDVPV--EM 280

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
           Y E+   I+   + + +I++DLL + +++  ++ L+   V ++E     +  +   A +K
Sbjct: 281 YKEFFEDINSEVDRLNNIISDLLTLVRLDQREIPLNIANVDINEMTQNILKRLTPLAKKK 340

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
            I +      +I     D         N++ NAI +TPSGG++ +    +  ++  + V+
Sbjct: 341 EIKLIYESHKDIIA-EIDEVKFTLALTNLIENAIKYTPSGGEVGVVIQ-SDLQDAFISVQ 398

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG+G+   E  +  + F +   ++     GTGLGL +    V  + G   + S   KG+
Sbjct: 399 DTGIGIAKEEQSRIFERFYRTDKTRNRETGGTGLGLAITYKTVIMHNGSIQVESEEGKGS 458

Query: 803 LIEIIFPLYDT 813
           +  + FPL   
Sbjct: 459 VFSVQFPLRHV 469


>gi|332653532|ref|ZP_08419277.1| sensor histidine kinase [Ruminococcaceae bacterium D16]
 gi|332518678|gb|EGJ48281.1| sensor histidine kinase [Ruminococcaceae bacterium D16]
          Length = 551

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 72/358 (20%), Positives = 153/358 (42%), Gaps = 31/358 (8%)

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
           +  ++ E  S+G  +++R G +LS N+      G            +   ++    ++  
Sbjct: 222 EFAALTENMSEGFLLMDRHGHVLSYNKGALNQLGAQAPQGEVNALVLNRSESFRQAVDEV 281

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-CYSLTMHDISEWKQEKNKL 571
           L+   S  + +             +   L               + + D++E +Q ++  
Sbjct: 282 LSGHRSQQMLRL----------NGRCCQLLANPVMQGEEQMGAVMVLLDVTEQEQRED-- 329

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
                        + +F A VSHE++TPLT+I G +E++++   G +       +A+ I 
Sbjct: 330 ------------LRREFTANVSHELKTPLTSISGIAEIMQS---GMVKAEDVQGFASDIY 374

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
           +    ++ +V D++ +S+++ G +N+  E V L +   E    ++  A +  + I+T   
Sbjct: 375 QEAQRLIALVEDIIRLSQLDEGAVNMEREDVDLFQLSLEVTKRLESAAQKNDVTIKT--M 432

Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751
               ++    R + ++  N+  NAI +   GG + ++        V + V D G+G+   
Sbjct: 433 GRSVQVHGVRRVLDEMIYNLCDNAIKYNRRGGTVAVTVGPVEGG-VEVSVEDNGIGIPAE 491

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +  +  + F ++  S      GTGLGL + K     + G+  + STP KGT + ++ P
Sbjct: 492 DQNRVFERFYRVDKSHSKDISGTGLGLSIVKHGAALHDGQIRLESTPGKGTTVTLLLP 549


>gi|281418943|ref|ZP_06249961.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium thermocellum JW20]
 gi|281407400|gb|EFB37660.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium thermocellum JW20]
          Length = 463

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 73/240 (30%), Positives = 124/240 (51%), Gaps = 7/240 (2%)

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           L++  +    +   K+DF+A +SHE+RTPLT+I+G+   I +            E  + I
Sbjct: 231 LNYMAQEVANQQKMKNDFIASISHELRTPLTSIMGWIITINSGDID--SKEELKEGLDII 288

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
           +R    + ++V++LLD SK ++G + L    V+L E +      ++  A  K I +    
Sbjct: 289 ERESKRLAELVDELLDFSKFDAGIITLRKSVVNLGELLKYIKRQMEPRAERKGITMTIDV 348

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
             ++P I AD   +KQ+ +NI+ N+  FT  GG I I      N  V++R+ D+G G+  
Sbjct: 349 DEHLPLIEADENRLKQVFINIIDNSFKFTQKGGYIDIIGRKNENG-VLIRIEDSGCGIPE 407

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            +L +  + F +  N       G+GLGL +   +V  + GK  I ST  KGT +++I P+
Sbjct: 408 EDLPRVKQRFFKGSNVVS----GSGLGLAICDEIVRLHNGKIDIESTVGKGTRVDVILPV 463


>gi|119947312|ref|YP_944992.1| sensor histidine kinase [Psychromonas ingrahamii 37]
 gi|119865916|gb|ABM05393.1| sensor histidine kinase with ATPase domain [Psychromonas ingrahamii
           37]
          Length = 1278

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 72/262 (27%), Positives = 126/262 (48%), Gaps = 15/262 (5%)

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           +  ++ K  +       EK S +KS+FLA +SHE+RTPL +++  S+ +     G L N 
Sbjct: 549 TVIERAKQAVEIQANNLEKASRYKSEFLANMSHELRTPLNSLLILSQSLAKNSQGNL-NE 607

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
              E A  I   G  +L ++ND+LD+SK+E+GK+++HFE  S++  +       +  AN+
Sbjct: 608 EQQEDARVIYEGGQSLLALINDILDLSKVEAGKLDIHFEQFSINNLLVNLGRQFKPVANK 667

Query: 682 KRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIIST----------- 729
           K + +     + +     +D + ++Q+  N+LSN I FT  G  + +             
Sbjct: 668 KGVELCFDKEDVLSDDFFSDPQRIEQVLRNLLSNGIKFTHHG-TVSLKVIQPGPSVRFDN 726

Query: 730 -THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                   +   V DTG+G++    E   + F Q   S      GTGLGL +++ +V   
Sbjct: 727 PALRGRNTLGFAVSDTGIGISADNQESVFEAFQQGDGSTSRNYGGTGLGLTISRELVKLM 786

Query: 789 MGKFYIFSTPAKGTLIEIIFPL 810
            G+  + S   +G+   +  PL
Sbjct: 787 GGEIQLQSKEGEGSTFTLYLPL 808


>gi|261211606|ref|ZP_05925893.1| signal transduction histidine kinase [Vibrio sp. RC341]
 gi|260838956|gb|EEX65588.1| signal transduction histidine kinase [Vibrio sp. RC341]
          Length = 569

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 87/305 (28%), Positives = 143/305 (46%), Gaps = 17/305 (5%)

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK------- 568
           +++    Q    + +     +   SL        F       + DI   ++         
Sbjct: 134 LITGIQAQVSNSVLILIGHNKGQFSLETKATLSRFRPLLERAISDIEHKEELIKLVEIRT 193

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
            +L  A+K AE+ +  KS+FLA +SHE+RTPL A++G  +V++             E   
Sbjct: 194 RELRLAQKFAEQANQSKSNFLAMMSHELRTPLNAVLGLIDVLRGD-----STSYQAELLE 248

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI-- 686
            ++ S  L+L I+ND+LD+S+IESG  +LH   V L + + +++   +  A EK I    
Sbjct: 249 QMENSAELLLIIINDVLDLSRIESGHFSLHCHWVDLKKKLDQSLVYHRQIAQEKGIAFNV 308

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
           +T     +     D   + QI  NI+ NAI FT SG Q+ I   +    +V  RV+DTG+
Sbjct: 309 QTHINERL-EYYTDSARLTQILFNIVGNAIKFTKSG-QVDIDLIY-GTHQVTFRVKDTGI 365

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+    +++   PF Q  NS      GTGLGL + K +++   G   + S    GT   +
Sbjct: 366 GIEKNRIDRLFTPFIQADNSITRNYGGTGLGLAITKHLIELMGGSIQVESELEVGTTFIL 425

Query: 807 IFPLY 811
             P++
Sbjct: 426 QVPIH 430


>gi|257867535|ref|ZP_05647188.1| histidine kinase [Enterococcus casseliflavus EC30]
 gi|257873864|ref|ZP_05653517.1| histidine kinase [Enterococcus casseliflavus EC10]
 gi|257801591|gb|EEV30521.1| histidine kinase [Enterococcus casseliflavus EC30]
 gi|257808028|gb|EEV36850.1| histidine kinase [Enterococcus casseliflavus EC10]
          Length = 578

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 75/369 (20%), Positives = 158/369 (42%), Gaps = 29/369 (7%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           R       QL  +L     G+ IIN E  +L  N  + +  G      L +PFT  +   
Sbjct: 234 RAYAASEQQLYGLLSELMIGVFIINEENQLLLLNPTMQEQLGMETAPTLPQPFTEVIHDT 293

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564
               + +        D        T  S +  K+L + +   +    +      +D++  
Sbjct: 294 QLIQLIYQFN-----DETPIFHAETTLSGERSKVLDVTL---RSFQENQLIGISYDLTRI 345

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           +Q +                + DF+  VSHE++TP+T++IGF+E + +            
Sbjct: 346 RQLE--------------KMQKDFVGNVSHELKTPVTSLIGFTETLLDG--AKEDPETLQ 389

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
            +   I +    + +++ D++ +S+ +S       +P++  E + + +      A +K++
Sbjct: 390 TFLEIIQKDAYRLKNLIQDIIQLSQ-DSDSFQYVDQPINFSELLQQVVQTYGPAAGKKQL 448

Query: 685 LIRTSFANNIPRILADLRSVKQ-IALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
             +       P IL+  + + Q I  N++ NA+ ++  GG I +S +   +++++ +V+D
Sbjct: 449 TFQFEGPE--PFILSTKKELLQPIVKNLVENAVTYSKPGGVITLSYS-EQDDQLLFQVQD 505

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
            G+G+   + E+  + F ++  ++     GTGLGL + K       G   + S P  G+ 
Sbjct: 506 QGIGIDEEDQERIFERFYRVDKARARNSGGTGLGLAIVKDYTKLLGGSIKVDSFPKIGST 565

Query: 804 IEIIFPLYD 812
             +  PL++
Sbjct: 566 FTVTLPLHE 574


>gi|298528298|ref|ZP_07015702.1| multi-sensor signal transduction histidine kinase
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511950|gb|EFI35852.1| multi-sensor signal transduction histidine kinase
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 592

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 82/417 (19%), Positives = 174/417 (41%), Gaps = 30/417 (7%)

Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM-EIEVMQLC 455
           + RL  +    ++     F    + +   E  P         +      ++   +   L 
Sbjct: 198 TFRLKPMIKMAQSIGQGNFQQRIQDSPGREFDPLVEAINRMAEDVEKSMELVSSQKSDLE 257

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           +I+    DG+A ++ +G I+S N++  K+F +      +KP  +F   +  +     L  
Sbjct: 258 TIVNGIKDGLAALDNQGRIISCNQSFKKIFQHLDTINGKKPVEIFFNNSLQAACEEVLGN 317

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575
            +       LE        +EK   + ++      +    + +HDI++ K  +       
Sbjct: 318 SMKQTRTMELEI-------KEKFYDVHVVSPSDQQNIGAIILLHDITDLKNLE------- 363

Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
                  S + DF+A  SHE+RTPLT+I G++E +       +   +  E    + ++ +
Sbjct: 364 -------SIRKDFVANASHELRTPLTSIKGYTETMLQHPD--IMQEKGTELLQVVIKNTD 414

Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNI 694
            ++ +++D+L +S+IES +  +  + V L   + ++ +    Y   K I+  +       
Sbjct: 415 NMIRLLDDILQLSRIESTQDQVALDDVDLAAVIFKSWNNCSHYTEGKNIVFESELEQEGQ 474

Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELE 754
             +  +   + Q+  N+  N+I F P  G I +        +V + V+D G G+   E +
Sbjct: 475 LLVRGEAEYLGQVFQNLFENSIKFVPGEGFIQV-LVRQEGNQVWVGVQDNGPGIPAAEQQ 533

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPA--KGTLIEIIF 808
           +  + F +     + + +GTGLGL + K ++ A  G+ ++ S  P    G ++    
Sbjct: 534 RIFERFYR-VKKDKKKVKGTGLGLAICKNIIKAFGGRIWVESPVPGSDSGCIVWFSL 589


>gi|307721459|ref|YP_003892599.1| Hpt sensor hybrid histidine kinase [Sulfurimonas autotrophica DSM
           16294]
 gi|306979552|gb|ADN09587.1| Hpt sensor hybrid histidine kinase [Sulfurimonas autotrophica DSM
           16294]
          Length = 764

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 91/306 (29%), Positives = 145/306 (47%), Gaps = 12/306 (3%)

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
             +    L EI S   R  +E         +++    I                D     
Sbjct: 84  REISADELFEICSNFRRSMIEFTYDAKVNSKEIFE-DISYIFDKNFKGILKYYTD----- 137

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
               KL  A++ A + +  K  FL+ +SHEIRTPL AI+GF  ++ ++        ++  
Sbjct: 138 SIFQKLIDARQEALRAAQAKEYFLSNMSHEIRTPLNAILGFVNLLMDEDISN----KHRN 193

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           Y + I  SG  +L I+ND+LD SK+ SG+ N+  +  SL E +S  + L    AN K I 
Sbjct: 194 YLDIILNSGENLLSIINDILDFSKLRSGEFNIEAKVFSLHEELSHTMELFVASANSKDIT 253

Query: 686 IRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744
           I +     IP  +  D+  +KQI  N LSNAI FTP GG I +  +   N+++ + V D 
Sbjct: 254 ITSFIDPRIPKELFGDVLRIKQIVSNFLSNAIKFTPVGGVIKVEASC-HNQQLTISVNDN 312

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           GVG+   +L+     F Q  +S+    EG+GLGL ++  + +   GK ++ S   +G+  
Sbjct: 313 GVGINKEDLQNIFVAFTQARSSEHDNKEGSGLGLCISHQLAELMHGKVHVNSKVGEGSTF 372

Query: 805 EIIFPL 810
            +  P+
Sbjct: 373 WLDIPV 378


>gi|229131904|ref|ZP_04260769.1| hypothetical protein bcere0014_8470 [Bacillus cereus BDRD-ST196]
 gi|228651495|gb|EEL07465.1| hypothetical protein bcere0014_8470 [Bacillus cereus BDRD-ST196]
          Length = 896

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 77/340 (22%), Positives = 150/340 (44%), Gaps = 29/340 (8%)

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
            G  +  I+ +     L   + ++        +  +  QT  +      +E +  + ++ 
Sbjct: 406 LGLTIHSIMGRMRIQTLLHESQAMTEEL---QVQSEELQTQAEELQMQAEELRTTNEQLE 462

Query: 545 IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
            +               ++ +  K++L        + S +KS+FLA +SHE+RTPL +I+
Sbjct: 463 SRTEEAEQKT-------TDLEITKSELEEKASEILRSSKYKSEFLANMSHELRTPLNSIL 515

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
             SE+++      L +    E A  I  SG  +L ++ND+LD+SK+E+GK+++ FE  ++
Sbjct: 516 LLSEMLRENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIFEATNI 574

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGG 723
            +  +         A +K + +  + ++ IP +   D + ++QI  N+LSNA  FT  G 
Sbjct: 575 SDMAANMQQNFLHIAAQKNVELTIADSDIIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGS 634

Query: 724 QIIISTTHTS--------------NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
              +S    S               + + + V+DTG+G+   + +   + F Q   +   
Sbjct: 635 ---VSLHFDSIETTNLSHDMQSISKDWMTISVKDTGIGIATEQHQLIFEAFQQADGATIR 691

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +  GTGLGL + K       G   + S   +G+   +  P
Sbjct: 692 KYGGTGLGLSICKEFARLLGGWITLESNLGEGSTFTVYIP 731


>gi|209522722|ref|ZP_03271280.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
 gi|209496771|gb|EDZ97068.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
          Length = 1493

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 90/360 (25%), Positives = 157/360 (43%), Gaps = 42/360 (11%)

Query: 475 LSTNRAVSKLF----GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530
           +S N  +  L          D+  +P           +    +  + +    +    I L
Sbjct: 608 VSYNPYIEALLTSDRAIASTDVFSEPLLESSIPLCRRMALKSMLAVRTSYQDEPNGIIML 667

Query: 531 GSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKK-------------I 577
              ++ +    R  I+ L   +        I++ K  + ++   +               
Sbjct: 668 HQCQQMRE-WNRDEIEFLEDVASQVGIT--IAQAKLLEVEVKSHRALEAKNQALEEAKLA 724

Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
           AE  S  KS+FLA +SHEIRTP+ A+IG + ++ +    P       ++   I  SG+ +
Sbjct: 725 AEIASRAKSEFLATMSHEIRTPMNAVIGMTGLLLDMELTP----EQRDFVETIRTSGDAL 780

Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-R 696
           L I+ND+LD SKIESGK+ L  +P  L   + E + L+   A+EK + +      + P  
Sbjct: 781 LTIINDILDFSKIESGKLELEKQPFKLRNCLEECLELLSGRADEKGLELAYIIDPSTPKT 840

Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEE----------------VIL 739
           IL D+  ++Q+ +N++SNAI FT  G  I+ +  TH   ++                +  
Sbjct: 841 ILGDVTRLRQVLVNLVSNAIKFTSEGEVILAVKATHPDAKKDVKKSDDSDFTESHYVLQF 900

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            VRDTG+G+    +++  K F Q+  S      GTGLGL +++ +     GK ++ S   
Sbjct: 901 EVRDTGIGIPPDRIDRLFKAFSQVDASTTREYGGTGLGLAISQRLSQLMNGKMWVASWVN 960


>gi|222055079|ref|YP_002537441.1| multi-sensor signal transduction histidine kinase [Geobacter sp.
           FRC-32]
 gi|221564368|gb|ACM20340.1| multi-sensor signal transduction histidine kinase [Geobacter sp.
           FRC-32]
          Length = 678

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 92/519 (17%), Positives = 210/519 (40%), Gaps = 25/519 (4%)

Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYK 355
           S  S  ++   N    +       +  PE  +           G  F    +        
Sbjct: 179 SDSSHGHVLASNDDPSAKGLRIELSRYPELQEMI-------RTGKAFVVKDA-KRHPLLA 230

Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
            V +        T+L  P   +   I  ++L                  +          
Sbjct: 231 EVREYIEDIDFDTILVIPIHHEQEIIGALILRTKGGEN----------SFGSRELAFCQS 280

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ---LCSILEATSDGIAIINREG 472
           I    AN          +  E  + R  K K+E E+ +      + E  S+G+ ++N  G
Sbjct: 281 IADAAANAIKNASLFEKVLEESDELRETKEKLEKELREKTVYEGLFEHASEGLMVLNAAG 340

Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH-YLTEILSLDLRQTLEKITLG 531
                NR+ +++ GY  + +L+     FL + +  V    ++   L  +  +  + +   
Sbjct: 341 QPQYVNRSAAEMLGYSGKQMLKMSLKDFLAEESLQVGMENHINFFLGREFSRKYDVLFKT 400

Query: 532 STKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
           S+ E++ +++ +   +L  +      + D++  +++++ L+ A +  +     KS+F+  
Sbjct: 401 SSGEKRCVAVSVSNHRLEGNYAILALI-DVTRERRDQHLLAEANERLKALDLLKSEFIYT 459

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
            ++++R P+  +      ++      L      E+ +    S + ++D++ +LLD S+ +
Sbjct: 460 ATNDLRLPVAVLHSNCLQLRESDTENLT-ETQCEHLDAAIESCDRLMDLIEELLDSSRFD 518

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
                L     ++ + + E  +++  +A+   + +  +   +      D   +K +  N+
Sbjct: 519 LKDYALTIGKQNIMDPIREVYTVLAPFASGNGVQMTVTSLQSDIFGSFDGDKIKCVLTNL 578

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           + NAI FTP GG+I IS     + E+ + + DTG G+    + +    F  + +++    
Sbjct: 579 IGNAIKFTPRGGEIGISVD-ADDLELKISISDTGEGIPEAYVTRIFNEFYHLKSAKGSLK 637

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           +G+GLGL ++K ++DA+ G+ ++ S+  +GT      PL
Sbjct: 638 KGSGLGLAVSKRIIDAHNGRIWVESSEDRGTTFSFAIPL 676



 Score = 39.2 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 23/170 (13%), Positives = 56/170 (32%), Gaps = 7/170 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP--NNHIGDLLKRQNTWYGK 146
           ++A G  + ++    + +G    +M+ M L D      +     NHI   L R+ +    
Sbjct: 336 LNAAGQPQYVNRSAAEMLGYSGKQMLKMSLKDFLAEESLQVGMENHINFFLGREFSRKYD 395

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                  G    V + ++   +      ++      +    R  +      +RL      
Sbjct: 396 VLFKTSSGEKRCVAVSVSNHRL---EGNYAILALIDVTRERRDQHLLAEANERLKALD-- 450

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256
           L + +  +++    +  +    S    LR  +  +       H D  +++
Sbjct: 451 LLKSEFIYTATNDLRLPVAVLHSNCLQLRESDTENLTETQCEHLDAAIES 500


>gi|159487203|ref|XP_001701623.1| chlamyopsin-5 sensory rhodopsin [Chlamydomonas reinhardtii]
 gi|158280842|gb|EDP06598.1| chlamyopsin-5 sensory rhodopsin [Chlamydomonas reinhardtii]
          Length = 1441

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 75/260 (28%), Positives = 129/260 (49%), Gaps = 5/260 (1%)

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
             I+    E+       +  +     K  F++ +SHE+RTPL  IIG S+ +     G +
Sbjct: 291 RLIAMRIVEEGNRIQVIQELKDLVEQKERFMSSMSHELRTPLNGIIGLSDALLVGSCGEI 350

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
            N + ++    I  SG  +L+++ND+LD + +  GK+ +  E V+L   V + I L Q  
Sbjct: 351 -NDQALKTITTIKTSGARLLNLINDILDAASMRKGKLTIKHEKVNLKRVVDDVIDLCQPL 409

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738
           A    + +      N+P +L D   + Q+  N++ N+  FT SG  I IS     + EV 
Sbjct: 410 AKR-GVKLVNDLRENVPFVLGDTGRIIQVFHNLIGNSCKFTHSG-NISISAAVKDD-EVE 466

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           + V DTG+G+   + ++    F Q+  S   +  GTGLGL L K +V+A+ G+  + S  
Sbjct: 467 VAVADTGIGIPEDKFDQIFLAFEQVDMSVTRKYGGTGLGLNLVKQLVEAHGGRISVKSRE 526

Query: 799 AKGTLIEIIFPLYDTSHPHD 818
            +GT       ++ + HP++
Sbjct: 527 NQGTTFYFTLKIH-SEHPNE 545


>gi|149914850|ref|ZP_01903379.1| phosphate regulon sensor histidine kinase, putative [Roseobacter
           sp. AzwK-3b]
 gi|149811038|gb|EDM70875.1| phosphate regulon sensor histidine kinase, putative [Roseobacter
           sp. AzwK-3b]
          Length = 349

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 84/368 (22%), Positives = 155/368 (42%), Gaps = 31/368 (8%)

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
           L ++L+A      +I R   IL+ N     L G   + I+ + F   L       +   +
Sbjct: 6   LSTLLDAIPLPAVLIGRGERILAANDQARALLG---QLIVGRHFITALR---QPPVLDAI 59

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH 573
              L    R+T  +       ++    + +       +S   +   DI+  +Q       
Sbjct: 60  ENTLRDGTRRT-TRYLGSEGGQDTSFVVTVSRVDTAAASGALVCFEDITHLEQ------- 111

Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE-YANYIDR 632
                      + DF+A VSHE+RTPLTA++GF E ++       G+PR  E +   +  
Sbjct: 112 -------AGQMRRDFVANVSHELRTPLTALMGFIETLQG---PAKGDPRASERFLGVMLS 161

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
               +  +V DLL +S++E+ +     + V L + +S     ++  A    + +     +
Sbjct: 162 EAQRMERLVRDLLSLSRVEADERVRPTDRVDLGKCLSGVGHSLRPVAEAADVHLALDLPD 221

Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE------EVILRVRDTGV 746
               +  D+  + Q+A N++ NAI +   G  + I  T  +N         I+ VRD G 
Sbjct: 222 TPVIVPGDVDQLTQVATNLVENAIKYGGKGKTVHIGLTTDANALSLRGPAAIVTVRDEGP 281

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+    + +  + F +I + +     GTGLGL + K +V+ + G+  I S   +GT   +
Sbjct: 282 GIDAVHIPRLTERFYRIDSHRSREMGGTGLGLAIVKHIVNRHRGRLRIDSELGQGTEFRV 341

Query: 807 IFPLYDTS 814
           I P +  +
Sbjct: 342 ILPAFPQA 349


>gi|94265844|ref|ZP_01289575.1| ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
 gi|93453619|gb|EAT04012.1| ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
          Length = 696

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 95/401 (23%), Positives = 173/401 (43%), Gaps = 33/401 (8%)

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             + R+++ K+  +   L +IL+ T D +A+ +   + L+ N+A     G   ++I  K 
Sbjct: 306 IEELRLSENKLGRQKQLLKTILDVTPDLVALQDENMVYLAANKAFCGYLGRKEDEITGKT 365

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556
               L         H   ++L      + E +T G   ++    +++ + +         
Sbjct: 366 DFDLLSAEQADQNYHEDMQVLLSRTPLSKEIMTKGRQGKKWHHVVKVPVLEDERIIGLLS 425

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
           T  DI+  KQ + KL H++K+ +            V+HEI TPL+ I+G+++++      
Sbjct: 426 TSRDITVIKQYQEKLIHSQKMED-----LGRLAGGVAHEINTPLSIILGYAQLLLQDI-- 478

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
              +    +    I++       IV DLL  S+      +   E + ++E++ E  SLV+
Sbjct: 479 -PPDEPVAQDVAIIEKQTQACRKIVADLLSFSR----GTDQAREKMDINESIREVTSLVE 533

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-TSNE 735
               + RI I     + IP I  +   ++Q+ +N+L+NA     S G I I T       
Sbjct: 534 HIFRQNRITILQRLDDQIPPIHGNRERLRQVWMNLLNNAADAIGSDGSIQIKTKLCAHRR 593

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            +++ V DTG G+T ++L+K  +PF     +     +GTGLGL L   ++  + G+    
Sbjct: 594 RLVVSVADTGSGITEHDLDKIFEPFFTTKPAD----KGTGLGLSLTFGIIKDHGGRISAL 649

Query: 796 STP---------------AKGTLIEIIFPLYDTSHPHD-CI 820
           S                   GT+  +  PL   S P D CI
Sbjct: 650 SPVPSEYMEFPAEFEHSAGPGTVFFVELPLEGESLPDDECI 690



 Score = 43.9 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 19/245 (7%), Positives = 52/245 (21%), Gaps = 7/245 (2%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTT 148
           D +      ++     +G    ++ G    D+      D   +    +L  +     +  
Sbjct: 338 DENMVYLAANKAFCGYLGRKEDEITGKTDFDLLSAEQADQNYHEDMQVLLSRTPLSKEIM 397

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +G        +  +P+    R   G           V    +       K      
Sbjct: 398 ---TKGRQGKKWHHVVKVPVLEDER-IIGL--LSTSRDITVIKQYQEKLIHSQKMEDLGR 451

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
                   +      I             ++  +       K      +    L S    
Sbjct: 452 LAGGVAHEINTPLSIILGYAQLLLQDIPPDEPVAQDVAIIEKQTQACRKIVADLLSFSRG 511

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
             +  +   IN +          +   ++ +         P +    +    +    ++ 
Sbjct: 512 TDQAREKMDINESIREVTSLVEHIFRQNRITILQRLDDQIPPIHGNRERLRQVWMNLLNN 571

Query: 329 CPIPF 333
                
Sbjct: 572 AADAI 576


>gi|255693529|ref|ZP_05417204.1| putative two-component sensor histidine kinase [Bacteroides
           finegoldii DSM 17565]
 gi|260620730|gb|EEX43601.1| putative two-component sensor histidine kinase [Bacteroides
           finegoldii DSM 17565]
          Length = 480

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 74/369 (20%), Positives = 167/369 (45%), Gaps = 23/369 (6%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            +++     + +I+ +  + I  ++    IL  N     +     E++L K       +N
Sbjct: 128 AEIKAAKNYMETIINSVKEPIIGLDNAMTILFINDEALSILNLQREEVLWKSAQEIALRN 187

Query: 505 TPSVMNHY-LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS---SCYSLTMHD 560
                    + +          E + + +  +E    ++ +      +     Y + + +
Sbjct: 188 DLLRRLLRGVQDSFDEKNTAKNEPLKIYADNKESYFQMKCMKTGREGTSQKEGYVILLKN 247

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I+E+K              +  S K+ F++ +SHE++TP++AI+   +++++ R G L +
Sbjct: 248 ITEFK--------------ELDSAKTTFISTISHELKTPISAILMSLQLLEDSRVGSLND 293

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
            +  E A  I  + + +L I ++LL+++++ESGK+ L        E +  AI   ++ A 
Sbjct: 294 EQQ-ELAQSIQDNSDRLLSITSELLNMTQVESGKLQLKPRVTKPIELIEYAIKANRVQAE 352

Query: 681 EKRILIRTSFANN-IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
           +  I +   +    + ++  D   +  +  N++SNAI ++   G+III    T +  + +
Sbjct: 353 KFNIQVEVQYPEEKMGKLFVDSEKIAWVLTNLVSNAIRYSAENGRIIIGARKTKDNWIEM 412

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            VRD G G+     +   + + ++P +   + +G+GLGL ++K  V+A+ G   + S   
Sbjct: 413 FVRDFGKGIDPRYHQSIFEHYFRVPGT---KVQGSGLGLSISKDFVEAHGGTLTVESEIG 469

Query: 800 KGTLIEIIF 808
           KG+   +  
Sbjct: 470 KGSCFTLRL 478


>gi|237727241|ref|ZP_04557722.1| two-component system sensor histidine kinase [Bacteroides sp. D4]
 gi|229434097|gb|EEO44174.1| two-component system sensor histidine kinase [Bacteroides dorei
           5_1_36/D4]
          Length = 1045

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 92/418 (22%), Positives = 168/418 (40%), Gaps = 38/418 (9%)

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE---------ATSD 463
           +        N   E    +    +  +    ++ +     +L   LE            D
Sbjct: 500 VNTFYDVVLNCSTEPDMVDVFCMDSTELHNAQQMLSATNHKLSMALEVANIVPWKWNLKD 559

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVED---ILRKPFTVFLEQNTPSVMNHYLTEILSLD 520
              + +    I     A++ + G   ED   +  K +   + +     +     ++    
Sbjct: 560 HTILCDLNRPI-----AMAAMPGSISEDQLSVSDKQYFAKIIKEDRPRVIQAYRDLADGK 614

Query: 521 LRQTLEKITLGSTKEEKLLSLRI----IIKKLPFSSC----YSLTMHDISEWKQEKNKLS 572
           + +  E        + K   +         +    +        +   I+E K  +N+L 
Sbjct: 615 IEKVKE-EYRVLANDGKHWKIDWVEAQAAVETRDKNGKPLTLVGSSLIINERKTMENELL 673

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
            AK  AE+ +  KS FLA +SHEIRTPL AIIGFS ++              EY N I+ 
Sbjct: 674 SAKDRAEESNRLKSAFLANMSHEIRTPLNAIIGFSNILA----TAEEEQEKQEYINIIES 729

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
           +  L+L +++D+LD+SKIE+G ++  +  V L++ +SE  S+V+       I +      
Sbjct: 730 NNTLLLQLISDILDLSKIEAGTLDFSYSNVELNDILSEIESVVRYRTETSGIQLIAHKGL 789

Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-SNEEVILRVRDTGVGMTNY 751
               I  +   + Q+  N+L+NA  FT  G    I+  +     E+   V+DTG G+   
Sbjct: 790 PSCPIKTEKNRLMQVLNNLLNNASKFTSQGS---ITFGYELCGRELYFYVKDTGCGIPAD 846

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           ++      F ++ +      +GTGLGL + + +V+   G+  + S   KG+      P
Sbjct: 847 KVNSIFGRFVKLNSF----VQGTGLGLSICQTIVEHMGGRIGVESEEGKGSTFWFTIP 900


>gi|116748776|ref|YP_845463.1| PAS/PAC sensor hybrid histidine kinase [Syntrophobacter
           fumaroxidans MPOB]
 gi|116697840|gb|ABK17028.1| PAS/PAC sensor hybrid histidine kinase [Syntrophobacter
           fumaroxidans MPOB]
          Length = 822

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 87/455 (19%), Positives = 160/455 (35%), Gaps = 34/455 (7%)

Query: 371 DAPKLSDNNAIKPVMLYRSDR--TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
            +P         P  L  +    + +           N  N +  T +     N+     
Sbjct: 238 ISPVSELFGTAAPWQLLLAMGALSILVLGGTAVAWHINGRNLVLQTGLKEAARNRLELEG 297

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
               +E E  + +  +  +     +   ++E  ++ I I  ++G+I   N     L G+ 
Sbjct: 298 KNFQLEREIAERKKVEDALRESEEKYRLVVENANEAIFIT-QDGVIKFPNPKTLSLTGFT 356

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            +++        L       +       L  +              EE  L    +    
Sbjct: 357 TDELTSANLAELLHSEDRQTVLQEHANTLESNSTSRYAFRAFRKNGEELWLEANSVPSTW 416

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                    + DI+  K+ + +L HA K+              ++H+    L  I G++E
Sbjct: 417 EERPAILNFIRDITLQKKLQAQLFHAHKM-----EAIGTLAGGIAHDFNNLLQVIQGYAE 471

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
           ++    FG   +  + +    I  +     ++   LL  S+    ++     P+ L+  +
Sbjct: 472 MLL---FGKEQDDPFQKELEEIFFAAKRGGELTRQLLTFSR----RIESKPRPIHLNRQI 524

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
            E   L++     K I I  + A ++  + AD    +Q+ +N+  NA    P GG + I 
Sbjct: 525 VETRKLLERTIP-KMITIELNLATDLRPVNADPAQFEQVLMNLAVNARDAMPEGGVLTIE 583

Query: 729 TT--------------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           T                +  E V+L V D G G+    LE   +PF     S +  G GT
Sbjct: 584 TRNVVLDELFCMGQVGVSPGEYVMLSVSDNGHGIDAGTLEHIFEPFY----STKGVGRGT 639

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GLGL +   +V ++ G    FS   KGT  +I  P
Sbjct: 640 GLGLAMVYGIVQSHAGCILCFSEAGKGTRFDIYLP 674


>gi|320354894|ref|YP_004196233.1| histidine kinase [Desulfobulbus propionicus DSM 2032]
 gi|320123396|gb|ADW18942.1| histidine kinase [Desulfobulbus propionicus DSM 2032]
          Length = 717

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 75/249 (30%), Positives = 128/249 (51%), Gaps = 8/249 (3%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E +Q+  +L  AKK AE  +  KS+FLA +SHEIRTP+  IIGF++++ +       +  
Sbjct: 176 EIRQQTAELRAAKKEAEAANIAKSEFLAAMSHEIRTPMNGIIGFTDMLLDTGL----DEE 231

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             E+A  I RS + +L ++ND+LD SK+E+GK++L   P   +    +   LV+     +
Sbjct: 232 QQEFAQTIKRSASALLSLINDILDFSKVEAGKLDLECIPFDPEITAQDVCDLVRPKVASR 291

Query: 683 RILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL- 739
            I +     + +P  ++ D    +Q+ +N++ N+  FT  G  ++ I+    + E + L 
Sbjct: 292 PIEVLCRIDDTLPANVMGDPGRYRQVLVNLMGNSAKFTKKGELELAIAVDDETEETITLH 351

Query: 740 -RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
            R+RDTG+G+   +LE   + F Q   S      GTGLGL + + +     G  +  S  
Sbjct: 352 ARIRDTGIGIPEEKLESIFEAFRQADGSTTREYGGTGLGLSICRKIAALMHGHVWAESEL 411

Query: 799 AKGTLIEII 807
             G+     
Sbjct: 412 DVGSTFHFT 420


>gi|283853026|ref|ZP_06370283.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           sp. FW1012B]
 gi|283571563|gb|EFC19566.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           sp. FW1012B]
          Length = 477

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 83/392 (21%), Positives = 160/392 (40%), Gaps = 27/392 (6%)

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
              +  +  + +   ++ E+   ++ +IL+  +D + ++ ++  I+S NR   +LF  P 
Sbjct: 95  YQELRQKVQELQEAHQESELRRQEIAAILDGITDIMMVLTKDLRIISVNRVFHELFNVPR 154

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
            +   +                        +        T     + +   +       P
Sbjct: 155 PE--GQHCYRLFRSGDKPCPECPAHRSFKSNAVCR-CMGTFKIAGQVRQFEMVASPIHNP 211

Query: 550 F--SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
               S   +   D++  ++ + K   A+K+A           A V+HEI  PLTA+ G +
Sbjct: 212 DSPESRILIFKRDVTMEQEYQAKYYQAEKMATIGM-----LAAGVAHEINNPLTAVYGLA 266

Query: 608 EVIKNQ------RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           E I+ +                 EY   I        DIV  +L  S+       L F P
Sbjct: 267 EGIRRRLPAIRAAVDEPLFADVAEYTETILMECRRCRDIVRSMLSFSRP----HTLAFSP 322

Query: 662 VSLDEAVSEAISLVQLYANEKR---ILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718
           V L+E V++ +++++ + +E+    + +  +  +++P +  D   +KQ+ LNIL+NA+  
Sbjct: 323 VCLNEVVTDTLNILRGHLDERGQQGLRLTVNLFDSLPTVPGDEAQLKQVLLNILANAMDA 382

Query: 719 TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
            P  G+I ++T   ++  V L V DTG G+    ++K   PF          G+G G+GL
Sbjct: 383 IPGEGEITVTTHPENDNTVNLSVEDTGCGIPPENMDKLFNPFFTTKP----VGKGIGIGL 438

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
               ++V  + G   + S    GT   +  PL
Sbjct: 439 AACYSIVREHHGVIEVASEVGLGTHFTVKLPL 470


>gi|265750529|ref|ZP_06086592.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_33FAA]
 gi|263237425|gb|EEZ22875.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_33FAA]
          Length = 1045

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 92/418 (22%), Positives = 168/418 (40%), Gaps = 38/418 (9%)

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE---------ATSD 463
           +        N   E    +    +  +    ++ +     +L   LE            D
Sbjct: 500 VNTFYDVVLNCSTEPDMVDVFCMDSTELHNAQQMLSATNHKLSMALEVANIVPWKWNLKD 559

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVED---ILRKPFTVFLEQNTPSVMNHYLTEILSLD 520
              + +    I     A++ + G   ED   +  K +   + +     +     ++    
Sbjct: 560 HTILCDLNRPI-----AMAAMPGSISEDQLSVSDKQYFAKIIKEDRPHVIQAYRDLADGK 614

Query: 521 LRQTLEKITLGSTKEEKLLSLRI----IIKKLPFSSC----YSLTMHDISEWKQEKNKLS 572
           + +  E        + K   +         +    +        +   I+E K  +N+L 
Sbjct: 615 IEKVKE-EYRVLANDGKHWKIDWVEAQAAVETRDKNGKPLTLVGSSLIINERKTMENELL 673

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
            AK  AE+ +  KS FLA +SHEIRTPL AIIGFS ++              EY N I+ 
Sbjct: 674 SAKDRAEESNRLKSAFLANMSHEIRTPLNAIIGFSNILA----TAEEEQEKQEYINIIES 729

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
           +  L+L +++D+LD+SKIE+G ++  +  V L++ +SE  S+V+       I +      
Sbjct: 730 NNTLLLQLISDILDLSKIEAGTLDFSYSNVELNDILSEIESVVRYRTETSGIQLIAHKGL 789

Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-SNEEVILRVRDTGVGMTNY 751
               I  +   + Q+  N+L+NA  FT  G    I+  +     E+   V+DTG G+   
Sbjct: 790 PSCPIKTEKNRLMQVLNNLLNNASKFTSQGS---ITFGYELCGRELYFYVKDTGCGIPAD 846

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           ++      F ++ +      +GTGLGL + + +V+   G+  + S   KG+      P
Sbjct: 847 KVNSIFGRFVKLNSF----VQGTGLGLSICQTIVEHMGGRIGVESEEGKGSTFWFTIP 900


>gi|238752982|ref|ZP_04614442.1| Histidine kinase [Yersinia rohdei ATCC 43380]
 gi|238708804|gb|EEQ01062.1| Histidine kinase [Yersinia rohdei ATCC 43380]
          Length = 1197

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 89/390 (22%), Positives = 172/390 (44%), Gaps = 19/390 (4%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF--- 497
           R     +   + Q  SI+ A    + I  + G +   N   +      ++ +L       
Sbjct: 507 RRQANLLHTRLQQQESIINALPFAVFIRTKNGELAVYNSHFASAHQDKLDGMLNNNIKKA 566

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-YSL 556
              +       ++ Y   +L     Q ++   L      +L  + + I  L  +      
Sbjct: 567 DWPMNSQLDREIDKYCRYVLLDRKPQMVD---LSLDINGELRDIFLWIIPLDNAERSLLG 623

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
              DIS+ K  + +L  A+  AE  +  KS FLA +SHE+RTP+ AI+G  E ++ +   
Sbjct: 624 GWLDISQRKTVERELEAARVEAESANRTKSTFLATISHELRTPMYAIMGLLE-LEIRNDQ 682

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
           P+      +    + +S   ++ +++D++D +KIE+G++++H   V   + +    ++ Q
Sbjct: 683 PVD----KDTLVTVSKSAQSLMLLLDDIIDSAKIEAGQLSVHPAVVDFRQEIERMFTIYQ 738

Query: 677 LYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSN 734
             A+E+ +       + IP + + D+  V+Q+  N+L NA+ FT  G   + I+   T  
Sbjct: 739 PIADERNLRFSAWVDDQIPDLLMIDMLRVRQVMGNLLGNALKFTEQGSVSVDITWEPTDE 798

Query: 735 EEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
           +  +  + + DTG+G++        +PF Q    +  R  G+GLGL +   ++    G+ 
Sbjct: 799 KHGVMNIDITDTGIGISPGAQATLFQPFSQANEGESPRFGGSGLGLWICHQLIHKMGGQI 858

Query: 793 YIFSTPAKGTLIEIIFPLYDTSH---PHDC 819
            + S   KGT + I  PL   +    P D 
Sbjct: 859 TLESQLGKGTSLFITLPLETATADDLPQDA 888


>gi|298530785|ref|ZP_07018187.1| multi-sensor signal transduction histidine kinase
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298510159|gb|EFI34063.1| multi-sensor signal transduction histidine kinase
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 693

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 85/422 (20%), Positives = 167/422 (39%), Gaps = 40/422 (9%)

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468
                      +      ++    ++    +    ++ +  +   L +I+  T D I + 
Sbjct: 275 RVYRQLVGDEIQDLSEAFDVMALTVKNHINELIEREKTIVQQQGLLKTIMNVTPDFITLQ 334

Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528
           +R       ++A    F    +DIL +       +       H   +ILS     + E  
Sbjct: 335 DRNLKYQFASKAFCDYFDLKEDDILGRTDFEIFPEEQADSNYHEDRQILSTGRPLSKE-- 392

Query: 529 TLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
            +  +++ + + + ++   +           LT  DI+  K+ + +L  ++K+ +     
Sbjct: 393 -VTLSRKGREVWMHVLKVPVYDQEKNIIGLLLTARDITMLKKYQEQLIQSQKMED----- 446

Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
                  V+HEI TPL  I+G+++++  +    + N  + E    I++   +   IV DL
Sbjct: 447 LGRLAGGVAHEINTPLGIILGYTQLLLEE----VENDEWAEDLKTIEKQTKICRKIVADL 502

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704
           L  S+          +PV ++ ++ E I LV+   +   I I  S   NIP  + D   +
Sbjct: 503 LGFSRYSQS----TSQPVDMNRSLEEVIKLVEHVLSLSHIRIYKSLDPNIPPFVGDHERL 558

Query: 705 KQIALNILSNAIHFTPSGGQIIISTTH-TSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
           KQ+ LN+++NA       G I + +      + +I+ + DTG G+    L K   PF   
Sbjct: 559 KQVWLNLINNAADAIGQDGVIYVKSKLCAHRQRIIISIADTGAGIEEESLSKIFDPFFTT 618

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP---------------AKGTLIEIIF 808
            +     G+GTGLGL ++  ++  + G     S P                 GT+  +  
Sbjct: 619 KS----VGKGTGLGLSVSFGIIKDHGGDISALSPPPVEYLPRDFPRSPSYGPGTVFIVEL 674

Query: 809 PL 810
           PL
Sbjct: 675 PL 676



 Score = 47.7 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 12/117 (10%), Positives = 31/117 (26%), Gaps = 6/117 (5%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTT 148
           D +   +  S+            ++G    ++      D   +    +L        + T
Sbjct: 335 DRNLKYQFASKAFCDYFDLKEDDILGRTDFEIFPEEQADSNYHEDRQILSTGRPLSKEVT 394

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           L         V + +  +P+Y + +   G           +    +    +  K   
Sbjct: 395 LSRK---GREVWMHVLKVPVYDQEKNIIGL--LLTARDITMLKKYQEQLIQSQKMED 446


>gi|158333594|ref|YP_001514766.1| sensory transduction histidine kinase [Acaryochloris marina
           MBIC11017]
 gi|158303835|gb|ABW25452.1| sensory transduction histidine kinase [Acaryochloris marina
           MBIC11017]
          Length = 726

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 87/512 (16%), Positives = 180/512 (35%), Gaps = 39/512 (7%)

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV--YSHGNLFYANPSFLLLTKYKSVDDI 360
            +  +     +     E    +     P P  +     G L   N SFL L    + + +
Sbjct: 244 DAIASRQQAESDLRLSEEKFSKAFRASPNPITMSTLEDGCLVEVNDSFLDLFGLTASEVL 303

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
               G ++L         + ++ +     D        RL     N +    +      K
Sbjct: 304 ----GRTSLELDLWADPADRMQMIQAILKDGIIRNYEYRLC--DRNGKEKTVLYSSEQLK 357

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
            N     +       +  + +  +  +E    +   +++   D I ++N +G  +  N+ 
Sbjct: 358 VNDQDCILSVI---NDITERKEAEIALEASEERFRMLVDQAVDAIYVVNEQGQFVDVNQQ 414

Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
                GY  +++L        +  +     +    +L  D    L  I     K+     
Sbjct: 415 ACANLGYTRDELLGCRVPDIQKSLSDDDFVNLWQRLLPKD---PLTFIGTHQRKDGSQFP 471

Query: 541 LRIIIK--KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
           + + +   +            DI+E +Q +           +  +   +  A + HE+R 
Sbjct: 472 VEVRLGLFEAGEEQLLLALARDITERRQAEKD--------RERLAEIGELAAMIVHEVRN 523

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
           PLT ++      +          R              +  ++N++L  +K    +  L 
Sbjct: 524 PLTTVLMGLNSFQRMDL----PDRAKLRLQLALEESERLQRLLNEILLYAK----QQKLD 575

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718
              V L++  ++ +  +Q   +     I+   A+    + AD+  +KQ+ +N++SNA   
Sbjct: 576 TTAVELNQLFADMLPTLQEMPSAADRPIQLMPADESAWVDADIDKLKQVFINLVSNACEA 635

Query: 719 TPSGGQIIISTTHTS-NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
            P G  II      +  ++V + V + G  +    L +  KPF    +S      G GLG
Sbjct: 636 VPEGEPIIWQLQIVALQDQVKIEVNNGGDPIPADVLPQLTKPFFTTKSS------GNGLG 689

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           L + K +V+ + G+  I S+ A GT + +  P
Sbjct: 690 LAITKRIVETHGGELVIQSSAASGTTVTVSLP 721



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 43/319 (13%), Positives = 95/319 (29%), Gaps = 26/319 (8%)

Query: 34  FETEKSKKENPCHD---SFEQSNFTDQNQESVSNTNYLD---SENTFVFDPIPRTVRFTW 87
           FE+ ++  ++   D   +FEQ     ++  +       D   SE  F           T 
Sbjct: 217 FESTQNPPDDELGDVIQTFEQMFNQIRDAIASRQQAESDLRLSEEKFSKAFRASPNPITM 276

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH---IGDLLKRQNTWY 144
           +    G L E+++      G  A +++G    ++   L  DP +    I  +LK      
Sbjct: 277 STLEDGCLVEVNDSFLDLFGLTASEVLGRTSLEL--DLWADPADRMQMIQAILKDGIIRN 334

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            +  L    G    V      L +  ++   S      +++      +     +  +++F
Sbjct: 335 YEYRLCDRNGKEKTVLYSSEQLKVNDQDCILS------VINDITERKEAEIALEASEERF 388

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQ--QSPPPHLRMKNKVSSLTEYYAH---KDDVLKTEKY 259
             L +       V  E+        Q+       ++++             DD       
Sbjct: 389 RMLVDQAVDAIYVVNEQGQFVDVNQQACANLGYTRDELLGCRVPDIQKSLSDDDFVNLWQ 448

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
            LL   +  L         + +Q+  +   G     + E    L+     +     ++  
Sbjct: 449 RLLP--KDPLTFIGTHQRKDGSQFPVEVRLGLF--EAGEEQLLLALARDITERRQAEKDR 504

Query: 320 NLTPETVDKCPIPFFVYSH 338
               E  +   +      +
Sbjct: 505 ERLAEIGELAAMIVHEVRN 523



 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/250 (8%), Positives = 67/250 (26%), Gaps = 12/250 (4%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + ++  G   +++++    +G    +++G R+ D+   L  D   ++   L  ++    
Sbjct: 399 IYVVNEQGQFVDVNQQACANLGYTRDELLGCRVPDIQKSLSDDDFVNLWQRLLPKDPLTF 458

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
             T    +G+   V + L                   +              +RL +   
Sbjct: 459 IGTHQRKDGSQFPVEVRLGLFEAGEEQ------LLLALARDITERRQAEKDRERLAEIGE 512

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP--LLT 263
               I      V      +    +    + + ++     +    + + L+       L  
Sbjct: 513 LAAMI---VHEVRNPLTTVLMGLNSFQRMDLPDRAKLRLQLALEESERLQRLLNEILLYA 569

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR-NHPSLSAYFDEGENLT 322
            ++       + + +  +     Q   +  +   +             +        NL 
Sbjct: 570 KQQKLDTTAVELNQLFADMLPTLQEMPSAADRPIQLMPADESAWVDADIDKLKQVFINLV 629

Query: 323 PETVDKCPIP 332
               +  P  
Sbjct: 630 SNACEAVPEG 639


>gi|325090376|gb|EGC43686.1| histidine kinase [Ajellomyces capsulatus H88]
          Length = 2345

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 91/430 (21%), Positives = 170/430 (39%), Gaps = 41/430 (9%)

Query: 410  SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL-CSILE-----ATSD 463
             L       E  +    +        + +  +I    +      L  ++L+       S+
Sbjct: 1662 WLVAAASDHENGDVAFADGLAFSEVEDKMAQQITHYTLRTREPVLVHNVLDDERFSNVSE 1721

Query: 464  GIAIINREGI------ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
              A  N +G       I+  N     L G            V  + N+ +  N  +  ++
Sbjct: 1722 AYASRNPQGKSVIALPIIQAN----NLLGV---------IHVEGKPNSFTQRNLVVLRLV 1768

Query: 518  SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW-KQEKNKLSHAKK 576
               +  +L    L     +           +           +     K  + +  H  K
Sbjct: 1769 CNQVGISLANAFLYRNASKHS---AANAAMVEAQKRALSLAREAERKSKVAEAEAKHNVK 1825

Query: 577  IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
            + E  +  KS FLA VSH++RTP+  +IG SE++K        +     Y   I    + 
Sbjct: 1826 LKEDAAKAKSIFLANVSHDLRTPMNGVIGLSELLKKTNL----DREQDGYVESIRVCADT 1881

Query: 637  VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696
            +L ++ND+LD SK+E+GKM +   P++L E ++E +  ++    ++ +          P 
Sbjct: 1882 LLTLINDILDFSKLEAGKMKVSTVPLNLRETIAEVVRALRYTHRDRGLQTIEDLDGVDPN 1941

Query: 697  --ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILR--VRDTGVGMTNY 751
              +L D   + QI +N+LSN+  FTP G   +        +  + +   V DTG+G++  
Sbjct: 1942 LLVLGDPVRLHQIFMNLLSNSYKFTPKGSVTVKAKAADEDDGRIRITCKVADTGIGISGE 2001

Query: 752  ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA-NMGKFYIFSTPAKGTLIEIIFPL 810
            +L +  +PF Q  +S      G+GLGL + KA+++    GK ++ S    GT +      
Sbjct: 2002 QLVRLFRPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGKIWLQSEEGVGTTVTFTL-- 2059

Query: 811  YDTSHPHDCI 820
              +  P + +
Sbjct: 2060 VLSKAPKNAV 2069


>gi|218260366|ref|ZP_03475722.1| hypothetical protein PRABACTJOHN_01385 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224557|gb|EEC97207.1| hypothetical protein PRABACTJOHN_01385 [Parabacteroides johnsonii
           DSM 18315]
          Length = 502

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 109/518 (21%), Positives = 185/518 (35%), Gaps = 52/518 (10%)

Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYSHG---NLFYANPSFLLLTKYKSVDDIEIAGGLS 367
           L   + +   L    VD  P+  FV   G      Y++P    L      D +       
Sbjct: 11  LEQEYKDLSGLLSNIVDSVPMYLFVKDTGDEFRYVYSSPMMNQLYGQYMGDVVGRTDF-- 68

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
            L   P ++     K + + ++ +       R      +RE  L          ++  + 
Sbjct: 69  ELFSDPVVAQAFRDKDLEVLKTGKVQ-----RFTEQMIDREGVLRFIDTMKMLVSREGKA 123

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCS----------ILEATSD-GIAIINREGIILS 476
               G+  +    R  + + +    +L            I +  ++     + + G I+ 
Sbjct: 124 PYLLGMSWDVTHQRQIEEQQQENNKRLALSCQAGKIYPWIWDVVNETAELSLTQNGEIVH 183

Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
           T              I  + FT  +  +   +    +      +    L          +
Sbjct: 184 T-------------FISHESFTEKIHPDEQQMYRDVVNAFARGETDS-LRLSFRCRYFSD 229

Query: 537 KLLSLR-IIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
           + + L  I                  + DI+  KQ +  +   K++AE+    KS F+A 
Sbjct: 230 EYVWLEKIGEVYEYDKDGKPSKAIGILRDITTDKQHEEDVRA-KRLAEESDRMKSAFIAN 288

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           +SHEIRTPL AI+GFS ++              EY   I  S   +L ++ D+LDISKIE
Sbjct: 289 MSHEIRTPLNAIVGFSTLLAQ----ADTEEEKQEYLRIIQSSNEFLLQLIGDILDISKIE 344

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
           SGK+   +    L+E            A    + I      N   I ++   + Q+  N 
Sbjct: 345 SGKLEFIYTSFRLNEIFQPQERAFSFRAEP-GVRIIFETDGNDYYIESEKTRLTQVLTNF 403

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           LSNA+ FT SG  I      T    + + V DTG G+    L      F ++   +    
Sbjct: 404 LSNAVKFTSSGS-IRFGYRLTETG-IYVYVTDTGSGIAKKHLSTVFDRFVKLDMFK---- 457

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +GTGLGL + K ++    G+  + S   KG+      P
Sbjct: 458 QGTGLGLSICKTIISILKGEIGVESEEGKGSTFWFTIP 495


>gi|237716267|ref|ZP_04546748.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262407872|ref|ZP_06084420.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|229443914|gb|EEO49705.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262354680|gb|EEZ03772.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
          Length = 628

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 112/524 (21%), Positives = 202/524 (38%), Gaps = 32/524 (6%)

Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSV 357
             E     +  S        E L        PI   +Y   G L   N   L +   +  
Sbjct: 117 ISEVQDGPDMASAYQALQYSERLLSNIFKYLPIGIELYDMDGVLVDLNDKELEMFHIEKK 176

Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
           +D+         +   ++ +         +          +     Q     ++ +    
Sbjct: 177 EDVLGINIFDNPIFPKEMKERLKKNEDADFTFRYDFSKVGSYYQNTQKQG--TIDLMTKV 234

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
               N   + +    I  +  +T +   K++        + +    G A  N    ILS 
Sbjct: 235 TTLYNSEHQPINYLLINADKTETTVAYNKIQEFEEFFELVGDYAKVGYAHFN----ILSG 290

Query: 478 NRAVSKLFGYPVEDILRKPFTVFL------EQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
           +    K +   V +    P +           +  +++  +L +     L   L K    
Sbjct: 291 HGYAQKSWYRNVGEAYETPLSDIFGTYRHFHPDDRALLIRFLDDAR-NGLTTQLSKEMRV 349

Query: 532 STKEEKLLSLRII--IKKLPFSSCYSLTMH---DISEWKQEKNKLSHAKKIAEKESSHKS 586
             ++       +   +KK          +    DI+E K+ +  L  A+  AE     KS
Sbjct: 350 LREDGTYTWTHVNLLVKKYAPQDRIIEIISINYDITELKRTEEMLVKARDKAEASDRLKS 409

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
            FLA +SHEIRTPL AI+GFS ++ +             Y + I  +  L+L+++ND++D
Sbjct: 410 AFLANMSHEIRTPLNAIVGFSSLLTSTENAA----EKELYNSLIGHNNKLLLNLINDVID 465

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706
           +SKIESG + L  + V+L E + E+++          + + T++  +   +  D   +KQ
Sbjct: 466 LSKIESGYLELRPDWVNLTELLDESVAEYAHQVPS-GVELLTNYPAHDSLVELDRLRIKQ 524

Query: 707 IALNILSNAIHFTPSGGQIIISTTHT-SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           I  N LSNA+  T +G    +   +   ++ V + V+DTG G+    LEK  + F ++ +
Sbjct: 525 ILSNFLSNALKNTTTG---HVEIFYEVDHQSVRIGVKDTGRGIPQNMLEKIFERFEKLDS 581

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
                 +G GLGLP+ K +V+   G+  + S    GT   I  P
Sbjct: 582 F----AQGAGLGLPICKLIVEKMNGRILVDSQLGIGTTFIIELP 621



 Score = 40.4 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 10/97 (10%), Positives = 29/97 (29%)

Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
                         +       E      E +       +  D     + ++     L +
Sbjct: 83  EVVYLLDTVKGSVWVRSKVCFQETDEDGNEIVYGISEVQDGPDMASAYQALQYSERLLSN 142

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
           I +    GI + + +G+++  N    ++F    ++ +
Sbjct: 143 IFKYLPIGIELYDMDGVLVDLNDKELEMFHIEKKEDV 179


>gi|319781102|ref|YP_004140578.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
 gi|317166990|gb|ADV10528.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 779

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 81/262 (30%), Positives = 134/262 (51%), Gaps = 11/262 (4%)

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           ++   + + +   AE     KS+FLA +SHEIRTP+  ++G +E++      P    R  
Sbjct: 214 RRAFAESAESLFKAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKTDLTP----RQK 269

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
            + + I +SGN +L I+ND+LD SKI +G++ L   P  L EAV +  +LV     EK +
Sbjct: 270 TFTDVIVKSGNALLTIINDILDFSKINAGQLTLDPAPFRLSEAVEDVATLVSARVAEKNL 329

Query: 685 LIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI---LR 740
            +       +P  ++ D    +QI  N+L NA+ FT  G  ++I        +V+   +R
Sbjct: 330 ELIVRVDPRLPAHVVGDAGRFRQIITNLLGNAVKFTEKG-HVLIDVGGEIVNDVVQLKIR 388

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V DTG+G+   +L+   + F Q+  S   R EGTGLGL +A  +VD   GK  + S   +
Sbjct: 389 VEDTGIGIPAEKLQNVFEKFAQVDGSSTRRHEGTGLGLAIAARLVDLMAGKIGVESEIGR 448

Query: 801 GTLIEII--FPLYDTSHPHDCI 820
           G++       P +  +   + +
Sbjct: 449 GSVFWFAVPLPAHQAAARDEIV 470


>gi|312883344|ref|ZP_07743070.1| sensor histidine kinase LuxQ [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309368960|gb|EFP96486.1| sensor histidine kinase LuxQ [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 848

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 91/381 (23%), Positives = 167/381 (43%), Gaps = 32/381 (8%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           R+++    Q   +   +   IAI + E  + S N +  ++F    + + +      L   
Sbjct: 349 RRLDETEKQFSDLFNFSLSPIAIWSIEDTVPSLNPSAERIF---PDAVSKHQLVESLAP- 404

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM---HDI 561
                  ++           +                R  +  +         M    DI
Sbjct: 405 -------HINLCFKGATLTGINISVHSKV-------YRWNLSPILSDDKIVKIMAQGQDI 450

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           + +   + +   A+K AE  + +++DFLAR+SHE+RTPL  I+G ++++K    G + + 
Sbjct: 451 TSFVMAEKESDEARKEAEASAKNQADFLARMSHELRTPLNGIMGVAQLLK----GRMVDK 506

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
           + IE    +  SG  +L ++ND+LD SKIE    N+      L +       +      E
Sbjct: 507 QDIEKMEVLCSSGEHLLAVLNDILDFSKIEQSSFNIEGAKFHLSDLGYSIEKVFGPICFE 566

Query: 682 KRI--LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE--- 736
           K +   +R++  ++I  + +D   + Q+  N++SNA+ FT  G ++++S +++   E   
Sbjct: 567 KGLMFELRSNIEDDI-WVFSDQVRLNQVIYNLVSNAVKFTHEG-EVVLSLSYSQGSEFSQ 624

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           + + V DTG+G+ N  LE    PF Q          G+GLGL + +++V    GK  + S
Sbjct: 625 LHIEVSDTGIGIKNERLEAIFDPFVQAGPDTTQIYGGSGLGLAIVQSLVTTMGGKVGVES 684

Query: 797 TPAKGTLIEIIFPLYDTSHPH 817
               GT   I  P+  TS  H
Sbjct: 685 VYGSGTRFFITVPIQLTSSDH 705


>gi|306838397|ref|ZP_07471242.1| PAS domain-containing protein [Brucella sp. NF 2653]
 gi|306406537|gb|EFM62771.1| PAS domain-containing protein [Brucella sp. NF 2653]
          Length = 857

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 98/622 (15%), Positives = 201/622 (32%), Gaps = 43/622 (6%)

Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271
           +G      + Y   +  +    +R  ++V +     +     L       L+++E     
Sbjct: 104 RGQIVYANQAYARMTGATDADGIRPLDQVLASEPAASDAIYRLTNAVRDGLSAQEEVRIS 163

Query: 272 QEDFHTINLNQY--TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE-----NLTPE 324
                  N +      +     L+  ++     ++ +         ++            
Sbjct: 164 GGLSRGANGSLAPVWYRIKARALEGGAEFKGPLVAWQVADISEERAEQERFFQELQEAIN 223

Query: 325 TVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
            +D  P  FF     G + Y N +               +  L+ ++    ++       
Sbjct: 224 HLDHAPAGFFSANPAGRIIYLNATLAEWLGVDLTQFTPGSLTLNDIVAGSGMA------L 277

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
           +   +++      +     +      SLA+ F    +  +         I  +  +   +
Sbjct: 278 IKAVKAEPGTSRNTVIDLDLIKRNGQSLAVRFYHRVQTARDGMPGTTRTIVLDRAEGDDS 337

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG--YPVEDILRKPFTVFL 501
                   ++      +    IA ++ EG  L TN     +F      + I R+     +
Sbjct: 338 SVAQRSAEVRFTRFFNSAPMAIAAVDAEGHTLRTNARFLDIFSGVVDRDAIDRRVKLENV 397

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDI 561
                    +                 T+    EE+ +   +                 I
Sbjct: 398 VHERDRETFNKALAAAFAGQASISPVDTVLPGNEERHIRFYMSPVTDLGGEAAEEAAI-I 456

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           S  +  + K    +    ++          ++H+    LTAII  S+++         +P
Sbjct: 457 SAVETTEQKALENQMAQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNHRA--SDP 514

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
            + +  N I ++ N    +V  LL  S+    +  L  E + L + +++ + ++      
Sbjct: 515 SFPDIMN-IKQNANRAASLVRQLLAFSR----RQTLRPEVLDLTDVLAD-LRMLLARLVG 568

Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT----------- 730
           K I ++     ++  + ADL   +Q+A+N+  NA    P GGQI + T            
Sbjct: 569 KDIELKIDHGRDLWPVKADLGQFEQVAVNLAVNARDAMPEGGQITLRTRNIPAADAAKLH 628

Query: 731 ---HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
                  + V+  V DTG G+    LEK  +PF          G+GTGLGL +   ++  
Sbjct: 629 YRDLPEADYVVFEVEDTGTGIPADVLEKIFEPFFTTK----EVGKGTGLGLSMVYGIIKQ 684

Query: 788 NMGKFYIFSTPAKGTLIEIIFP 809
             G  Y  S   KGT  +I  P
Sbjct: 685 TGGFIYCDSEVGKGTTFKIFLP 706



 Score = 70.4 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/238 (11%), Positives = 66/238 (27%), Gaps = 7/238 (2%)

Query: 319 ENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
           ++L    +D  P    +    G + YAN ++  +T     D I     +  L   P  SD
Sbjct: 84  QDLAHSFMDTQPEGTVISDPRGQIVYANQAYARMTGATDADGIRPLDQV--LASEPAASD 141

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
                   +                 +    +   + +    +A +         +  + 
Sbjct: 142 AIYRLTNAVRDGLSAQEEVRISGGLSRGANGSLAPVWYRIKARALEGGAEFKGPLVAWQV 201

Query: 438 VDTRINKRKMEIEVMQLC-SI--LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
            D    + + E    +L  +I  L+    G    N  G I+  N  +++  G  +     
Sbjct: 202 ADISEERAEQERFFQELQEAINHLDHAPAGFFSANPAGRIIYLNATLAEWLGVDLTQFTP 261

Query: 495 KPFT-VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
              T   +   +   +   +           ++   +    +   +     ++     
Sbjct: 262 GSLTLNDIVAGSGMALIKAVKAEPGTSRNTVIDLDLIKRNGQSLAVRFYHRVQTARDG 319



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 47/420 (11%), Positives = 103/420 (24%), Gaps = 38/420 (9%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD--ILHIDPNNHIGDLLKRQNTWYGKT 147
           D  G +   ++   +  G      I   L  V        D    + + ++   +   + 
Sbjct: 102 DPRGQIVYANQAYARMTGATDADGI-RPLDQVLASEPAASDAIYRLTNAVRDGLSAQEEV 160

Query: 148 TL-----WPIEGTNLYVPIDLAALPIYSRNREFSG-FRGFGIVHVNRVDNDPRALGKRLD 201
            +         G+   V   + A  +     EF G    + +  ++    +     + L 
Sbjct: 161 RISGGLSRGANGSLAPVWYRIKARALEGGA-EFKGPLVAWQVADISEERAEQERFFQELQ 219

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR------MKNKVSSLTEYYAHKDDVLK 255
           +  +HL     G  S       I+   +    L           ++           ++K
Sbjct: 220 EAINHLDHAPAGFFSANPAGRIIYLNATLAEWLGVDLTQFTPGSLTLNDIVAGSGMALIK 279

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN--NSKESFEYLSHRNHPSLSA 313
             K    TS  + +                     T ++          L        S 
Sbjct: 280 AVKAEPGTSRNTVIDLDLIKRNGQSLAVRFYHRVQTARDGMPGTTRTIVLDRAEGDDSSV 339

Query: 314 YFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLT-KYKSVDDIEIAGGLSTLLD 371
                E       +  P+    V + G+    N  FL +       D I+    L  +  
Sbjct: 340 AQRSAEVRFTRFFNSAPMAIAAVDAEGHTLRTNARFLDIFSGVVDRDAIDRRVKLENV-V 398

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
             +  +         +    +       L     N E  +     P              
Sbjct: 399 HERDRETFNKALAAAFAGQASISPVDTVL---PGNEERHIRFYMSPVTDLGGEAAEEAAI 455

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSI----------LEATSDGIAIINREGIILSTNRAV 481
               E  + +  + +M  +  ++ ++                 I + +    +L TN   
Sbjct: 456 ISAVETTEQKALENQM-AQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSD---LLLTNHRA 511



 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 45/134 (33%), Gaps = 12/134 (8%)

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY-LT 514
           S ++   +G  I +  G I+  N+A +++ G    D   +P    L     +    Y LT
Sbjct: 89  SFMDTQPEGTVISDPRGQIVYANQAYARMTGATDAD-GIRPLDQVLASEPAASDAIYRLT 147

Query: 515 EILSLDLRQTLEKITLG---STKEEKLLSLRIIIKKLPFSSC-------YSLTMHDISEW 564
             +   L    E    G         L  +   IK               +  + DISE 
Sbjct: 148 NAVRDGLSAQEEVRISGGLSRGANGSLAPVWYRIKARALEGGAEFKGPLVAWQVADISEE 207

Query: 565 KQEKNKLSHAKKIA 578
           + E+ +     + A
Sbjct: 208 RAEQERFFQELQEA 221


>gi|226944603|ref|YP_002799676.1| hybrid histidine kinase [Azotobacter vinelandii DJ]
 gi|226719530|gb|ACO78701.1| hybrid histidine kinase [Azotobacter vinelandii DJ]
          Length = 642

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 83/278 (29%), Positives = 142/278 (51%), Gaps = 9/278 (3%)

Query: 534 KEEKLLSLRIIIKK--LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
           K+  L+ +R+ + +  LP    +   + DI++    +  L    + AE+ ++ KS FLA 
Sbjct: 3   KDGSLMPIRLAVGRVDLPDEVLFVGFVTDITDRYTLEASLRETAERAEQAAAAKSTFLAN 62

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           +SHEIRTP+ +IIGF+E++      P+       + N I +S   +L ++ND+LD +K+E
Sbjct: 63  MSHEIRTPMNSIIGFTELLLQSNLSPV----QRNHLNTIRQSSRSLLGLLNDILDTTKME 118

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALN 710
            G + L     SL     +  S + L A  KR+ + T +  ++P     D   + Q+  N
Sbjct: 119 KGGLELERTDFSLKGLAMQIESSLYLGAQSKRLTLATHYPRDMPEHFQGDPLRLLQVLTN 178

Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           ++ NAI FT  G ++ +  +H  +  V ++VRDTG+GMT  +      PF Q   S   R
Sbjct: 179 LVGNAIKFTERG-RVDVVFSHEED-MVHVQVRDTGIGMTPQQAASIFAPFTQADASISRR 236

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
             GTGLG  +A  +V+   G+  + S   +G+   +  
Sbjct: 237 FGGTGLGTTIAHQLVELMGGRIGVESELGRGSTFHVYL 274


>gi|71083870|ref|YP_266590.1| phosphate regulon [Candidatus Pelagibacter ubique HTCC1062]
 gi|71062983|gb|AAZ21986.1| phosphate regulon [Candidatus Pelagibacter ubique HTCC1062]
          Length = 347

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 81/355 (22%), Positives = 151/355 (42%), Gaps = 27/355 (7%)

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
           L+   D + I+++   +   N++    FG    DI+ K  ++ L     + +   +   +
Sbjct: 15  LDEMMDQVIILDKFKNVFFANKSAVARFG---NDIIGKNISLILRD---ANLLESIDLAI 68

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKL---PFSSCYSLTMHDISEWKQEKNKLSHA 574
                Q L+        +    ++ II   L          + + D++E  + +      
Sbjct: 69  QDKSSQVLDVEIKLPIFQ--FYNVNIIPDSLNESEDEHSVIIFLKDLTEIYKTQQF---- 122

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
                     KSDF+A VSHE+RTPL +I    E I +            ++   + +  
Sbjct: 123 ----------KSDFVANVSHELRTPLQSIKLGLETINDGHASN-DFEMQKKFLPIMMQQT 171

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
             + +++NDLL +SKIE  +       + L E ++  I L      +K+I I  +  ++ 
Sbjct: 172 ERMENLINDLLSLSKIELQEHIRPTTELDLKEIITHVIKLNSELVKKKKIKIENNITDDT 231

Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELE 754
            +I  D   + +I  N++ NA  ++ S   I IS     +  ++  ++D GVG+    L 
Sbjct: 232 YKISGDRNRLIEIFTNLIDNACKYSDSDTVIKISLVKKMD-TILFSIKDQGVGIPKKYLS 290

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +  + F ++  ++     GTGLGL + K +V+ +     I ST  KGT   I FP
Sbjct: 291 RITERFFRVDPARSKDAGGTGLGLAIVKHIVNQHRATMDIISTEGKGTEFTIEFP 345


>gi|83951462|ref|ZP_00960194.1| Multi-sensor Signal Transduction Histidine Kinase [Roseovarius
           nubinhibens ISM]
 gi|83836468|gb|EAP75765.1| Multi-sensor Signal Transduction Histidine Kinase [Roseovarius
           nubinhibens ISM]
          Length = 445

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 80/440 (18%), Positives = 175/440 (39%), Gaps = 22/440 (5%)

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF-EKANQFPENMPQNG 432
              D + ++  +           S       +N E            + +     +   G
Sbjct: 20  HPEDLSRLETALEEHLAGHTNRVSIDYRLRPFNSEEWRWFRTDASCTEWDAGGVALNLVG 79

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
            + E    +  +  ++     L S+++ T  G A++  +G+ + +N+A+ +  GY  ++ 
Sbjct: 80  TQWEISKRKRMELALKQSEEDLRSLVDNTPIGSALVALDGVCIRSNKALRRYLGYSADEF 139

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
            +  F   +      V N  +  +L      + E       K+  ++   +         
Sbjct: 140 AKLNFKTLIHWEDLPVHNDNVA-LLLNGHAASFEMERRYIRKDGNVVWGHVCCVLARDVD 198

Query: 553 C----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                Y + + DI+  ++ +                K DF+   SHEIRTP+T I G  +
Sbjct: 199 GNPQHYVVQIIDITAQRRLEE--------------MKRDFINLASHEIRTPVTTITGALD 244

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
            I +  +    + +  E  +   R  + +  I++DLLD  ++ +  M L      + + +
Sbjct: 245 -IAHMLYSKGTDKKLAELLSIAKRGSDRLRSILDDLLDFDRVSASTMALTIVRCDITDVI 303

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
           + AI+      +E+   I  S ++ +     D   ++++ ++++SNA  ++P  G+I+I+
Sbjct: 304 NHAIARSAKILDERSAKISLSQSDEVIEWHCDPIMLQKVLISLISNAAKYSPKNGEIVIT 363

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
            +      + + VRD G+G+     E A +PF Q   S     +  G GL +++ ++   
Sbjct: 364 ASV-DAANLAICVRDYGIGIPLEFHEHAFEPFWQRDPSDARAHQSIGFGLSVSRHVIRQM 422

Query: 789 MGKFYIFSTPAKGTLIEIIF 808
            G+  I      GT  +I+ 
Sbjct: 423 GGELSIEPVDGPGTEFKIVL 442



 Score = 46.9 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 22/207 (10%), Positives = 48/207 (23%), Gaps = 13/207 (6%)

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTIN-LNQYTKKQYFGTLQNNSKESFEYL- 303
            +      L+T     L    + +         N       +      + ++      L 
Sbjct: 19  VHPEDLSRLETALEEHLAGHTNRVSIDYRLRPFNSEEWRWFRTDASCTEWDAGGVALNLV 78

Query: 304 ----SHRNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVD 358
                      +     + E      VD  PI    V   G    +N +      Y + +
Sbjct: 79  GTQWEISKRKRMELALKQSEEDLRSLVDNTPIGSALVALDGVCIRSNKALRRYLGYSADE 138

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
                    TL+    L  +N    ++L   +    +       I+ +  N +       
Sbjct: 139 F--AKLNFKTLIHWEDLPVHNDNVALLL---NGHAASFEMERRYIRKDG-NVVWGHVCCV 192

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKR 445
              +             +    R  + 
Sbjct: 193 LARDVDGNPQHYVVQIIDITAQRRLEE 219



 Score = 39.6 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 15/129 (11%), Positives = 38/129 (29%), Gaps = 4/129 (3%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151
            G     ++ L + +G  A +   +    +     +  +N    LL   +    +     
Sbjct: 118 DGVCIRSNKALRRYLGYSADEFAKLNFKTLIHWEDLPVHNDNVALLLNGHAASFEMERRY 177

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
           I      V   +  +     +     +    +V +  +    R    + D      HEI+
Sbjct: 178 IRKDGNVVWGHVCCVLARDVDGNPQHY----VVQIIDITAQRRLEEMKRDFINLASHEIR 233

Query: 212 KGHSSVEKE 220
              +++   
Sbjct: 234 TPVTTITGA 242


>gi|300703823|ref|YP_003745425.1| sensor histidine kinase in two-component regulatory system with
           phob [Ralstonia solanacearum CFBP2957]
 gi|299071486|emb|CBJ42808.1| sensor histidine kinase in two-component regulatory system with
           phoB [Ralstonia solanacearum CFBP2957]
          Length = 443

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 74/404 (18%), Positives = 160/404 (39%), Gaps = 35/404 (8%)

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDT-----RINKRKMEIEVMQLCSILEATSDGI 465
                +      + P  +   G     +       R    ++E +  +    ++A+ +G+
Sbjct: 52  RLWRVLESPAYGEIPSALGLWGEVYYRLHRLMKGWRTQVLQVEQQHSRFIQAIQASPNGV 111

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
            +++ E  I   N      FG   +  LR+  T  + +        ++  +   +  + L
Sbjct: 112 LMLDGEDQIEWCNAVAEAHFGLSAKRDLRQRITHLIRRP------EFVRYLARGEFEEPL 165

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
               +G  K+  ++S +++           L   DI++ +  +              + +
Sbjct: 166 TMRDMGLHKQ-SIVSAQVLPY---GEDRKLLVSQDITKLENTE--------------AMR 207

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
            DF+A VSHE++TPLT + GF E +++    PL       Y   +      +  +V DLL
Sbjct: 208 RDFVANVSHELKTPLTVLSGFLETVRD---LPLSEDDKRRYLEMMHVQATRMQHLVEDLL 264

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
            ++ +E         PV +   + +     +  +  +   I  +   ++  +      + 
Sbjct: 265 ALATLEGNPEPPSVTPVPMQRMMLQLQHDAEALSAGRH-AISMTCDPSV-SVCGAELELL 322

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
               N++SNAI +TP+GG+I +  +       +  V DTG+G+    + +  + F ++  
Sbjct: 323 SAFSNLVSNAIRYTPAGGRIGLDWSARD-GHAVFSVTDTGIGIAPEHIPRLTERFYRVDR 381

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           S+     GTGLGL + K ++  +  +  + S   +G+     FP
Sbjct: 382 SRSRDTGGTGLGLAIVKHVLSRHGAELQVSSERGQGSTFRASFP 425


>gi|187924828|ref|YP_001896470.1| multi-sensor signal transduction histidine kinase [Burkholderia
           phytofirmans PsJN]
 gi|187716022|gb|ACD17246.1| multi-sensor signal transduction histidine kinase [Burkholderia
           phytofirmans PsJN]
          Length = 437

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 77/409 (18%), Positives = 164/409 (40%), Gaps = 35/409 (8%)

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK-----RKMEIEVMQLCSILEATSDGI 465
                +      + P      G     +     +     R +E +  +    ++A+ +G+
Sbjct: 52  RLWRLLDAPVYGEVPSAPGIWGEIYYRLHKLAKRWHAQVRSVEQQHSRFIQAIQASPNGV 111

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
           A+++    I   N      FG   +  LR+  T  + Q        ++  + S    + L
Sbjct: 112 AMLDDHDQIEWCNAISELHFGLDAKRDLRQHITHLVRQP------DFVRYLNSHRYEEML 165

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
               +    +++   L + +      +   +   DI+E ++                + +
Sbjct: 166 ---IMRGMGDKRQNVLSVQVFPY-GENRKLVLSQDITELERT--------------DAMR 207

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
            DF+A VSHE++TPLT + GF E ++     PL       Y   +++  + +  IVNDLL
Sbjct: 208 RDFVANVSHELKTPLTVLSGFLETMRE---LPLSEAERSRYLELMEQQASRMRHIVNDLL 264

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
            ++K+E        + + +   +       +  +++    I       +  +      + 
Sbjct: 265 VLAKLEGDNKPPSDQMIDMRAVLRHLRDDAENLSSDHH-KIVFDTDEGL-TVTGVETEIL 322

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
               N+++NAI +TP GG I ++  H      I  V D+G+G+   ++ +  + F ++  
Sbjct: 323 SALGNLVTNAIRYTPDGGAIKVAW-HAQGGSAIFSVTDSGLGIPAADIPRLTERFYRVDR 381

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           S+     GTGLGL + K ++  +  +  + S   +G+   + FP+Y T+
Sbjct: 382 SRSRDTGGTGLGLAIVKHVLQRHDAQLDVKSEEGRGSTFTVRFPVYRTA 430


>gi|323977442|gb|EGB72528.1| response regulator receiver domain-containing protein [Escherichia
           coli TW10509]
          Length = 1197

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 88/421 (20%), Positives = 167/421 (39%), Gaps = 16/421 (3%)

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
            W+  +                  +    +       ++ +  +E ++    ++ ++  +
Sbjct: 528 TWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISFRKALSDSLPN 587

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--NTPSVMNHYLTEILSLDL 521
              ++N +G ++S N A    F          P         +  S ++    E      
Sbjct: 588 PTYVVNWQGNVISHNSAFEHYFTADYYKNAMLPLENSDSPFKDVFSNVHEVTAETKENRT 647

Query: 522 RQTLEKITL-GSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
             +       G  K        +       ++ Y     DI+E +   + L   +  A  
Sbjct: 648 IYSQVFEINNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLIHALEVERNKAIN 707

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            +  KS FLA +SHEIRTP+++I+GF E++       L   + +E  +    +G  +L +
Sbjct: 708 ATVAKSQFLATMSHEIRTPISSIMGFLELLS---GSGLSKEQRVEAISLAYATGQSLLGL 764

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR---I 697
           + ++LD+ KIESG   L  + V +   V          A  K I +  + ++ +P    +
Sbjct: 765 IGEILDVDKIESGNYQLQPQWVDIPALVQNTCHSFGAIAASKSIAL--NCSSTLPERYLV 822

Query: 698 LADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMTNYELE 754
             D ++ KQ+  N+LSNA+ FT  G  +I  S  H  +   ++   + DTG G++  E +
Sbjct: 823 KIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLVHIDDNHAVIKMTIMDTGSGLSQEEQQ 882

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           +  K + Q       +  G+GLGL + K ++    G   + S P  GT   I  P+  T 
Sbjct: 883 QLFKRYSQTTAG--RQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVEITQ 940

Query: 815 H 815
            
Sbjct: 941 Q 941


>gi|313888990|ref|ZP_07822649.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312844976|gb|EFR32378.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 556

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 70/364 (19%), Positives = 147/364 (40%), Gaps = 31/364 (8%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           R++E E   + +IL+   + + I++    +L+ N +  ++F     +IL +     +   
Sbjct: 220 REIERERDTINTILKNMRESLVIVDENKNLLAVNDSAREIFK-SKREILGENIINLIRDE 278

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564
               M          +         +    +         + +        +   D +E 
Sbjct: 279 EILKMTD--------EALMGKSIEAITRIGDRDYKYYVNPVYEDKRVRGLLILFIDETE- 329

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
                          +    + +F + VSHE++TPLT+I GFSE++ N            
Sbjct: 330 -------------EIRALRLREEFSSNVSHELKTPLTSISGFSELLVNNLVEDKDKE--- 373

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
            +   I      +L +V D++ IS +E+   +   E V L E +SE +   +    EK +
Sbjct: 374 GFYKLIYDDSKRLLSLVEDIMKISGLENAG-DYDKEEVDLREIISEVLKGYENLIEEKNL 432

Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744
            ++      +     +   + ++  N+++N + +   GG++ I  +        + + DT
Sbjct: 433 EVKLEGQGTVFE---NRTMIWELFSNLINNGLKYNKEGGRLDIKISEEERAY-KIIIADT 488

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G+   +L +  + F ++  S+  +  GTGLGL + K ++    GK  I S   +GT  
Sbjct: 489 GIGIPQEDLARIFERFYRVDKSRSRKVGGTGLGLSIVKHILQKIGGKVKISSQLGQGTTF 548

Query: 805 EIIF 808
           E++ 
Sbjct: 549 ELLL 552


>gi|308067293|ref|YP_003868898.1| signal transduction histidine kinase [Paenibacillus polymyxa E681]
 gi|305856572|gb|ADM68360.1| Signal transduction histidine kinase [Paenibacillus polymyxa E681]
          Length = 481

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 83/262 (31%), Positives = 134/262 (51%), Gaps = 10/262 (3%)

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            D  E ++ K  L    K     S +KSDF+A +SHE+RTPL +II  ++ I N++   L
Sbjct: 210 RD--ELQKAKVILEERAKQLMMASQYKSDFMATMSHELRTPLNSIINLAQ-IINEQGKEL 266

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
                 +Y++ I  SG+ +L ++ND+LD+SK+E+G M +  EPVS+ E     +   ++ 
Sbjct: 267 DEDELDQYSDLIYASGHDLLQLINDILDLSKVEAGHMEIVSEPVSVREIAQVMMMHFEVT 326

Query: 679 ANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQI-IISTTH----- 731
           A +K +         IP  I +D + V+QI  N+LSNA  FT  G  +  IST H     
Sbjct: 327 AKDKNLEFSLKEHEPIPNEIRSDSKRVQQILRNLLSNAFKFTHEGRILLEISTQHLNQKG 386

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
              + V+  V+DTG+G++  +     + F Q   S   +  GTGLGL +++       G 
Sbjct: 387 QEGDWVVFAVKDTGIGISKLQQHVIFEAFQQANGSINRKYGGTGLGLSISRDFSRLLGGF 446

Query: 792 FYIFSTPAKGTLIEIIFPLYDT 813
             + S   KG+   +  P+  +
Sbjct: 447 IRLESEEGKGSTFSLYLPMCPS 468


>gi|294646778|ref|ZP_06724401.1| PAS domain S-box [Bacteroides ovatus SD CC 2a]
 gi|294807691|ref|ZP_06766484.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b]
 gi|292637938|gb|EFF56333.1| PAS domain S-box [Bacteroides ovatus SD CC 2a]
 gi|294445127|gb|EFG13801.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b]
          Length = 623

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 112/524 (21%), Positives = 202/524 (38%), Gaps = 32/524 (6%)

Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSV 357
             E     +  S        E L        PI   +Y   G L   N   L +   +  
Sbjct: 112 ISEVQDGPDMASAYQALQYSERLLSNIFKYLPIGIELYDMDGVLVDLNDKELEMFHIEKK 171

Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
           +D+         +   ++ +         +          +     Q     ++ +    
Sbjct: 172 EDVLGINIFDNPIFPKEMKERLKKNEDADFTFRYDFSKVGSYYQNTQKQG--TIDLMTKV 229

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
               N   + +    I  +  +T +   K++        + +    G A  N    ILS 
Sbjct: 230 TTLYNSEHQPINYLLINADKTETTVAYNKIQEFEEFFELVGDYAKVGYAHFN----ILSG 285

Query: 478 NRAVSKLFGYPVEDILRKPFTVFL------EQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
           +    K +   V +    P +           +  +++  +L +     L   L K    
Sbjct: 286 HGYAQKSWYRNVGEAYETPLSDIFGTYRHFHPDDRALLIRFLDDAR-NGLTTQLSKEMRV 344

Query: 532 STKEEKLLSLRII--IKKLPFSSCYSLTMH---DISEWKQEKNKLSHAKKIAEKESSHKS 586
             ++       +   +KK          +    DI+E K+ +  L  A+  AE     KS
Sbjct: 345 LREDGTYTWTHVNLLVKKYAPQDRIIEIISINYDITELKRTEEMLVKARDKAEASDRLKS 404

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
            FLA +SHEIRTPL AI+GFS ++ +             Y + I  +  L+L+++ND++D
Sbjct: 405 AFLANMSHEIRTPLNAIVGFSSLLTSTENAA----EKELYNSLIGHNNKLLLNLINDVID 460

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706
           +SKIESG + L  + V+L E + E+++          + + T++  +   +  D   +KQ
Sbjct: 461 LSKIESGYLELRPDWVNLTELLDESVAEYAHQVPS-GVELLTNYPAHDSLVELDRLRIKQ 519

Query: 707 IALNILSNAIHFTPSGGQIIISTTHT-SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           I  N LSNA+  T +G    +   +   ++ V + V+DTG G+    LEK  + F ++ +
Sbjct: 520 ILSNFLSNALKNTTTG---HVEIFYEVDHQSVRIGVKDTGRGIPQNMLEKIFERFEKLDS 576

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
                 +G GLGLP+ K +V+   G+  + S    GT   I  P
Sbjct: 577 F----AQGAGLGLPICKLIVEKMNGRILVDSQLGIGTTFIIELP 616



 Score = 40.4 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 10/97 (10%), Positives = 29/97 (29%)

Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
                         +       E      E +       +  D     + ++     L +
Sbjct: 78  EVVYLLDTVKGSVWVRSKVCFQETDEDGNEIVYGISEVQDGPDMASAYQALQYSERLLSN 137

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
           I +    GI + + +G+++  N    ++F    ++ +
Sbjct: 138 IFKYLPIGIELYDMDGVLVDLNDKELEMFHIEKKEDV 174


>gi|256838460|ref|ZP_05543970.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
 gi|256739379|gb|EEU52703.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
          Length = 1045

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 95/516 (18%), Positives = 190/516 (36%), Gaps = 49/516 (9%)

Query: 317 EGENLTPETVDKCPIPFFVYSHGN--------LFYANPSFLLLTKYKSVDDIEIAGGLST 368
              +   +  +  P+P+               +   N +F      K     +    ++ 
Sbjct: 409 RLLSRYRDLFNNMPLPYIRQRLIREGTQIDVQVLDVNHAFEEKIAPKDFVVNKRGKEIAN 468

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
           L+          +  V                            +  +P  + N      
Sbjct: 469 LIGGSY---PLLLSAVPTVLESGKSFTYEYYFEPT----GLYYTIIIMPTSEENV----- 516

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNR-------- 479
             +    +  D    +  ++    +L   LEA        N  EG I+  ++        
Sbjct: 517 -VDAFFIDITDIHKFQTHLKAMNHKLAMALEAADLLPWRYNLAEGKIIYESKVHPGDNIE 575

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST--KEEK 537
                      ++  K +   +  +  + +     ++ +  +++  ++  L      E++
Sbjct: 576 TAE----VHTHEVSLKEYFSKIHPSFRACVEKAFDDLCNGKIKKVRKEYCLERLIPGEDR 631

Query: 538 LLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
                I +     +S        +   I+E KQ ++ L  A+  AE+ +  KS FLA +S
Sbjct: 632 HEWEEIQVMVEYDASGKPKALIGSTISITERKQLEHDLRMARDKAEESNKLKSAFLANMS 691

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HEIRTPL AI+GFS ++ +            E+A+ I+ + +L+L ++ND+LD+SKIE+G
Sbjct: 692 HEIRTPLNAIVGFSNILASTD----DLEDKKEFADIIENNNSLLLQLINDILDLSKIEAG 747

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713
            +   ++ V ++  + +      L      + I          I  D   + Q+ +N+L+
Sbjct: 748 TLEFTYDYVDINAVLRDLEQSAHLKNKNPDVQISFKDYLEPCVIYTDRNRLSQLMINLLN 807

Query: 714 NAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
           NA+ FT +G  I+       +  +   V DTG G+   + +     F ++        +G
Sbjct: 808 NAMKFTQAGS-ILFGYKLKDDNTLWFYVEDTGCGIPENKRKDIFGRFVKLNTF----AQG 862

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           TGLGL + + +V    G   + S   KG+      P
Sbjct: 863 TGLGLSICEMIVTQMKGTIGVDSVEGKGSRFWFTLP 898


>gi|238797459|ref|ZP_04640958.1| Sensor kinase protein rcsC [Yersinia mollaretii ATCC 43969]
 gi|238718730|gb|EEQ10547.1| Sensor kinase protein rcsC [Yersinia mollaretii ATCC 43969]
          Length = 1001

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 96/378 (25%), Positives = 163/378 (43%), Gaps = 29/378 (7%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
             ++E        I+ +   GI+I+   +G  + +N                  +   L 
Sbjct: 395 ALRLEEHEQFNRKIVASAPVGISILRISDGTNILSNELA-------------HNYINLLT 441

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
                 +   + E  +  +           T     L +  +  +          + D+S
Sbjct: 442 NEDRERITRIICEQQANFVDVM--------TSNNNNLQISFVHSRYRNEDVAICVLVDVS 493

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
              + +  L      AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R
Sbjct: 494 SRVKMEESLQEMAAAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPQGVDR 552

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                  ++ S  L+L I++D+LD SKIES ++ +     S  E ++   +       +K
Sbjct: 553 ---LVTAMNNSSGLLLKIISDILDFSKIESEQLKIEPSEFSTVEVITHISANYLPLVVKK 609

Query: 683 RILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
           R+ +      N+PR++  D   ++Q+  N+L+NAI FT +G  II+       + +  RV
Sbjct: 610 RLGLYCFIEPNVPRVMMGDSVRLQQVISNLLNNAIKFTDTG-CIILQVRVR-GDYLEFRV 667

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
           RDTGVG+ + E+ +   PF QI    Q   +GTGLGL + + +V+   G   + S    G
Sbjct: 668 RDTGVGINSREINQLFDPFFQIGTGVQRHFQGTGLGLAICEKLVNLMDGDVEVISELGMG 727

Query: 802 TLIEIIFPLYDTSHPHDC 819
           ++  I  PLY   + H+ 
Sbjct: 728 SIFAIRIPLYLAENRHEA 745


>gi|332707075|ref|ZP_08427133.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
 gi|332354100|gb|EGJ33582.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
          Length = 907

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 81/243 (33%), Positives = 134/243 (55%), Gaps = 10/243 (4%)

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
            +++ AK  AE  +  KS+FL+ +SHE+RTPL  I+G+++++K +        R  +   
Sbjct: 433 AEIAEAKDKAEVANQAKSEFLSNMSHELRTPLNGILGYAQILKREHNLSF---RQTDGLE 489

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I +SG  +L ++ND+LD+SKIE+ KM L+ + +     +   + ++++ A EK IL + 
Sbjct: 490 IIHKSGIHLLTLINDILDLSKIEARKMELYPDDIHFANFLDSVVGVIKMRALEKDILFKY 549

Query: 689 SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS----NEEVILRVRD 743
              +N+P  I+AD + ++Q+ LN+L NAI FT  G Q+ +             +   + D
Sbjct: 550 QTESNLPIGIIADEKRLRQVLLNLLGNAIKFTEQG-QVTLGVRVKEYQVNTSTICFDIID 608

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TGVGM   +L K   PF Q+    Q R EGTGLGL + K +V+   G+  + S   KG+ 
Sbjct: 609 TGVGMNPQQLHKIFLPFEQV-GDTQRRSEGTGLGLAITKQLVELMGGELKVTSELGKGSK 667

Query: 804 IEI 806
              
Sbjct: 668 FWF 670


>gi|330811069|ref|YP_004355531.1| histidine kinase, Hybrid [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379177|gb|AEA70527.1| Putative histidine kinase, Hybrid [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 633

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 79/351 (22%), Positives = 149/351 (42%), Gaps = 24/351 (6%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL-- 541
           + G   +   ++   +  +    ++     T +++  L   L +         K +    
Sbjct: 151 IVGMSSDAFSQRQQEILFKAAILALFALLFTFLVARRLATNLSRPIRDIGNAVKAIQQGD 210

Query: 542 RIIIKKLPFSSCYSLTMHDI-----------SEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
                 +   +        I            E  Q   +L   ++ AEK +S KS+FLA
Sbjct: 211 YSTPLPIVDDAELGALSRHINNLADGLGQASREQHQAMAQLIKTREEAEKANSAKSEFLA 270

Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650
            +SHE+RTP+  ++G  ++++  R          EY      S   +L ++ND+LD S+I
Sbjct: 271 MMSHELRTPMNGVLGMLQLLETTRM----TDEQHEYTALASESTEHLLKVINDILDFSRI 326

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI--PRILADLRSVKQIA 708
           E   + L   P +L E VS      Q  A ++++ +     +++   ++  D   ++QI 
Sbjct: 327 ERSALELEHIPFNLAELVSSCAQSFQHSAAQRKLGLDLLVPDDMQALQVQGDPTRIRQIL 386

Query: 709 LNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIP 764
           +N++ NA+ FT  G ++ +     + +         VRD+G+G+    LE+    F Q  
Sbjct: 387 VNLIGNALKFTEQG-RVTVQCQWQALDHELLWFTCTVRDSGIGIPAESLERMFDAFQQAD 445

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
           NS   R  GTGLGLP+A+ + +   G     S   +G++  +  PL  +  
Sbjct: 446 NSISRRYGGTGLGLPIARTLAERMGGTLRAQSEEGQGSVFTLEIPLALSRQ 496


>gi|218886320|ref|YP_002435641.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218757274|gb|ACL08173.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 686

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 78/418 (18%), Positives = 156/418 (37%), Gaps = 35/418 (8%)

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILST 477
            K          +         R+ +++++    +  S+ ++  D I +++  +  IL  
Sbjct: 272 RKRGGDEVIQLADSFRNMVWSIRLYRKRLQESEGKYRSLFDSGPDPIFVVDCTDLRILDA 331

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT---LGSTK 534
           N    +++GY   ++   P T     +     +     +                +   K
Sbjct: 332 NPRAVEMYGYTRAELNGLPLTAL-GGDVMRECSAVFDTVFDGGDAAGGCLNIPKAMQVRK 390

Query: 535 EEKLLSLRII--IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS--DFLA 590
           +  +  + +              ++  DISE       +        + +  KS  +  A
Sbjct: 391 DGSVFHVNLHACPISYRGRPAIIVSTTDISE-------MMDKDAQIIQAAKMKSLGEMSA 443

Query: 591 RVSHEIRTPLTAIIGFSEVIKN--QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
            V+HE+  PL AI   S+ +    ++  P+   R  E A  I    +   +I+N L    
Sbjct: 444 GVAHELNQPLNAIRMGSDFLSLVIEQGLPVPQSRLHEVARDICTQVDRATEIINTLRSFG 503

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIA 708
           +    K +   EP+ ++      + LV+     + + ++   A  +P + A    ++Q+ 
Sbjct: 504 R----KADTVIEPLDINRPTRAVLPLVERQFLLQNVEVKLDLAEGLPPVRAHENRLQQVF 559

Query: 709 LNILSNAIHF------TPSG--GQIIISTTHTSNEEVIL-RVRDTGVGMTNYELEKAMKP 759
            N+++NA         T  G  G I I+T   ++   ++  V D G G+     E+  +P
Sbjct: 560 FNLVTNARDAILDRARTDGGLRGVITIATRAEADGNAVVATVSDNGAGIPEALREQIFQP 619

Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
           F     +    G+G GLGL +   +V    G   I ST  KGT   +  P +  + PH
Sbjct: 620 FFTTKVT----GQGMGLGLSIVYGIVRDYGGDIRIESTEGKGTAFHVRLPAHRDTPPH 673



 Score = 47.7 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/125 (13%), Positives = 33/125 (26%), Gaps = 16/125 (12%)

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVD-------DIEI 362
                E E       D  P P FV       +  ANP  + +  Y   +        +  
Sbjct: 297 RKRLQESEGKYRSLFDSGPDPIFVVDCTDLRILDANPRAVEMYGYTRAELNGLPLTALGG 356

Query: 363 AGGLS--TLLDAPKLSDNNAIKPV-----MLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
                   + D      + A   +     M  R D +    +     I +    ++ ++ 
Sbjct: 357 DVMRECSAVFDTVFDGGDAAGGCLNIPKAMQVRKDGSVFHVNLHACPISYRGRPAIIVST 416

Query: 416 IPFEK 420
               +
Sbjct: 417 TDISE 421



 Score = 39.6 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 28/267 (10%), Positives = 68/267 (25%), Gaps = 14/267 (5%)

Query: 76  FDPIPRTVRFTWNID-AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG 134
           FD  P      + +D     + + +    +  G    ++ G+ L  +   +  + +    
Sbjct: 311 FDSGPDP---IFVVDCTDLRILDANPRAVEMYGYTRAELNGLPLTALGGDVMRECSAVFD 367

Query: 135 DLLKRQNTWYG-----KTTLWPIEGTNLYVPIDLAALPI--YSRNREFSGFRGFGIVHVN 187
            +    +   G     K      +G+  +  ++L A PI    R            +   
Sbjct: 368 TVFDGGDAAGGCLNIPKAMQVRKDGSVFH--VNLHACPISYRGRPAIIVSTTDISEMMDK 425

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247
                  A  K L +  + +        +  +   D  S          ++++  +    
Sbjct: 426 DAQIIQAAKMKSLGEMSAGVAHELNQPLNAIRMGSDFLSLVIEQGLPVPQSRLHEVARDI 485

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
             + D        L +    +    E    IN                     +      
Sbjct: 486 CTQVDRATEIINTLRSFGRKADTVIEPL-DINRPTRAVLPLVERQFLLQNVEVKLDLAEG 544

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFF 334
            P + A+ +  + +    V        
Sbjct: 545 LPPVRAHENRLQQVFFNLVTNARDAIL 571


>gi|288918126|ref|ZP_06412483.1| PAS/PAC sensor hybrid histidine kinase [Frankia sp. EUN1f]
 gi|288350508|gb|EFC84728.1| PAS/PAC sensor hybrid histidine kinase [Frankia sp. EUN1f]
          Length = 679

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 85/527 (16%), Positives = 173/527 (32%), Gaps = 56/527 (10%)

Query: 325 TVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
            +D  P         G +   N     L  Y   + +     +  L+     + + A + 
Sbjct: 12  LLDAAPDAIVGVRPDGRIVLVNAQAEWLFGYSREELVGQP--VEILVPEVFRAAHPARRG 69

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
             L       + A   L  ++ +     A   +      +  E         +    +  
Sbjct: 70  AYLADPRPRPMGAGMELAALRRDGTQFPAEISLSAV---RTAEGTFVTAAIRDVTSRKRA 126

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
           +            +LEA  D I  +  +G I   N    +LFGY  ++++ +   + + +
Sbjct: 127 EA-------MFRGLLEAAPDAIVGVRPDGRIALVNAQAERLFGYGRDELVGQSVEILVPE 179

Query: 504 NTPSVMNHYLTEILSLDLRQTL--EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT--MH 559
           +   +   +     S    + +          ++       I +  L       ++  + 
Sbjct: 180 SARHLHPQHRERYFSDPRPRPMGAGMQLAARRRDGTEFPAEISLSALETEDGLLVSAAIR 239

Query: 560 DISEWK-----------QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
           D+++             Q + +    +    +           V+H+    L  II ++ 
Sbjct: 240 DVTDRLEAQAERERLRAQAERERLEVQLHQSQRLESLGQLAGGVAHDFNNLLAVIINYTT 299

Query: 609 VIKNQRFGPLGN-----PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
            +                   +    I R+      + + LL   + E     +  +P+ 
Sbjct: 300 FVGEVVTDAAKVQGGRWESARQDIEQIQRAAERAAQLTHQLLAFGRRE----VVQPKPLD 355

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
           L+  V +   L++    E  + + TS    +  +LAD+  ++Q+ +N+  NA    P GG
Sbjct: 356 LNGVVHDMEQLLRRTLGEH-VELHTSAYPGLWPVLADVGQIEQVLVNLAVNARDAMPGGG 414

Query: 724 QIIISTT--------------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
            + I T                     V LRV D+G GM    + +A +PF         
Sbjct: 415 TLTIDTANVRVNEETAGTRPGARPGRFVHLRVSDSGTGMRPEVVTRAFEPFFTTKA---- 470

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           +GEG+GLGL     ++    G   I ST   GT +  + P  + + P
Sbjct: 471 KGEGSGLGLATVYGIITQAGGHVEIISTVDVGTTVSAMLPAIEGAVP 517



 Score = 83.9 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 48/130 (36%), Gaps = 4/130 (3%)

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           S+L+A  D I  +  +G I+  N     LFGY  E+++ +P  + + +   +        
Sbjct: 11  SLLDAAPDAIVGVRPDGRIVLVNAQAEWLFGYSREELVGQPVEILVPEVFRAAHPARRGA 70

Query: 516 ILSLDLRQTL--EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT--MHDISEWKQEKNKL 571
            L+    + +          ++       I +  +  +    +T  + D++  K+ +   
Sbjct: 71  YLADPRPRPMGAGMELAALRRDGTQFPAEISLSAVRTAEGTFVTAAIRDVTSRKRAEAMF 130

Query: 572 SHAKKIAEKE 581
               + A   
Sbjct: 131 RGLLEAAPDA 140



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/268 (8%), Positives = 52/268 (19%), Gaps = 32/268 (11%)

Query: 206 HLHEIKKGHSSVEKEKYDIF---SQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
            L +         +    I    +Q         +  V    E    +            
Sbjct: 11  SLLDAAPDAIVGVRPDGRIVLVNAQAEWLFGYSREELVGQPVEILVPEVFRAAHPARRGA 70

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
              +           +   +    Q+   +  ++  + E                 E + 
Sbjct: 71  YLADPRPRPMGAGMELAALRRDGTQFPAEISLSAVRTAEGTFVTAAIRDVTSRKRAEAMF 130

Query: 323 PETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEI--------------AGGLS 367
              ++  P         G +   N     L  Y   + +                     
Sbjct: 131 RGLLEAAPDAIVGVRPDGRIALVNAQAERLFGYGRDELVGQSVEILVPESARHLHPQHRE 190

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
                P+     A   +   R D T   A   L  ++      ++          +    
Sbjct: 191 RYFSDPRPRPMGAGMQLAARRRDGTEFPAEISLSALETEDGLLVSAAIRDVTDRLEA--- 247

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLC 455
                           + + + E  +L 
Sbjct: 248 -----------QAERERLRAQAERERLE 264



 Score = 57.7 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 19/248 (7%), Positives = 56/248 (22%), Gaps = 18/248 (7%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL-LKRQNTWY----G 145
             G +  ++ +     G    +++G  +  +   +    +       L            
Sbjct: 25  PDGRIVLVNAQAEWLFGYSREELVGQPVEILVPEVFRAAHPARRGAYLADPRPRPMGAGM 84

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +      +GT    P +++   + +    F        +          A+ +       
Sbjct: 85  ELAALRRDGTQF--PAEISLSAVRTAEGTFVTAA----IRDVTSRKRAEAMFR---GLLE 135

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
              +   G     +        +    + R +    S+          L  +      S+
Sbjct: 136 AAPDAIVGVRPDGRIALVNAQAERLFGYGRDELVGQSVEILVPESARHLHPQHRERYFSD 195

Query: 266 ESSLP----EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
               P     Q      +  ++  +     L+                 L A  +     
Sbjct: 196 PRPRPMGAGMQLAARRRDGTEFPAEISLSALETEDGLLVSAAIRDVTDRLEAQAERERLR 255

Query: 322 TPETVDKC 329
                ++ 
Sbjct: 256 AQAERERL 263



 Score = 42.3 bits (98), Expect = 0.34,   Method: Composition-based stats.
 Identities = 23/241 (9%), Positives = 62/241 (25%), Gaps = 15/241 (6%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI--LHIDPNNHIGDLLKRQNTWYGKTT 148
             G +  ++ +  +  G    +++G  +  +      H+ P +        +    G   
Sbjct: 146 PDGRIALVNAQAERLFGYGRDELVGQSVEILVPESARHLHPQHRERYFSDPRPRPMGAGM 205

Query: 149 LW---PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF- 204
                  +GT     I L+AL          G      +       + +A  +RL  +  
Sbjct: 206 QLAARRRDGTEFPAEISLSALETED------GLLVSAAIRDVTDRLEAQAERERLRAQAE 259

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
               E++   S   +    +    +   +  +   ++  T       D  K +     ++
Sbjct: 260 RERLEVQLHQSQRLESLGQLAGGVAHDFNNLLAVIINYTTFVGEVVTDAAKVQGGRWESA 319

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
            +     ++             Q     +    +      +     +            E
Sbjct: 320 RQDI---EQIQRAAERAAQLTHQLLAFGRREVVQPKPLDLNGVVHDMEQLLRRTLGEHVE 376

Query: 325 T 325
            
Sbjct: 377 L 377


>gi|251778814|ref|ZP_04821734.1| Two component system histidine kinase [Clostridium botulinum E1
           str. 'BoNT E Beluga']
 gi|243083129|gb|EES49019.1| Two component system histidine kinase [Clostridium botulinum E1
           str. 'BoNT E Beluga']
          Length = 681

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 92/245 (37%), Positives = 140/245 (57%), Gaps = 2/245 (0%)

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           K     L  A K  ++    KS FLA +SHE+RTPL+AII  SE++K + FG L N + +
Sbjct: 424 KLRTEDLREAIKGLKEADKIKSLFLANMSHELRTPLSAIITCSEILKEEIFGEL-NSKQL 482

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           ++   I  SGN +L ++N++LDISKIE+GKM L     S+ +   E+ S+++  A  K I
Sbjct: 483 KHVTNILNSGNHLLHLINNVLDISKIEAGKMKLTIGEYSISDIAMESFSVLKSLAYRKNI 542

Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744
            I  +   +   I  D   +KQI  N++SN+I FT  GG+I I+ T      + L + D 
Sbjct: 543 EINLNIEPSDFIIKIDANKLKQILYNLISNSIKFTEEGGKIQINITKN-LAYMKLIIEDN 601

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G+   + ++    F Q+ NS + + EGTGLGLPL K +V+ + G+ ++ S    GT I
Sbjct: 602 GIGIKKEDQKRIFNEFEQVDNSYERKYEGTGLGLPLTKKLVEMHGGEIFLISNIGTGTKI 661

Query: 805 EIIFP 809
            I  P
Sbjct: 662 IITIP 666


>gi|169830118|ref|YP_001700276.1| two component system histidine kinase [Lysinibacillus sphaericus
           C3-41]
 gi|168994606|gb|ACA42146.1| two component system histidine kinase [Lysinibacillus sphaericus
           C3-41]
          Length = 916

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 73/260 (28%), Positives = 129/260 (49%), Gaps = 15/260 (5%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E ++ K +L  + +     S++KS+FLA +SHE+RTPL +I+  SE++       L +  
Sbjct: 483 ELEKAKQELEESAEQLILNSNYKSEFLANMSHELRTPLNSILILSEMLAENSQDHLTDEE 542

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             E+A  I  SG  +L ++ND+LD+SK+E+GK+++ F  V++ E   +        A +K
Sbjct: 543 -TEFAKVIHSSGEDLLALINDILDLSKVEAGKLDIIFNEVNMSEVPVQIEHTFAPVAMKK 601

Query: 683 RILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIIST------------ 729
            I    S A+++  +   D +  +QI  N+LSNA  FT  G  + ++             
Sbjct: 602 NIDFHISKADHVVDVFYTDEKRFQQIIKNLLSNAFKFTEHGS-VTLAINQLAQSQLTSNM 660

Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
              S++ + + V DTG+G+   + +   + F Q   +   +  GTGLGL + K       
Sbjct: 661 QDISDDWLEITVSDTGIGIPKDKHQLIFESFQQADGATVRKYGGTGLGLSICKEFAKLLG 720

Query: 790 GKFYIFSTPAKGTLIEIIFP 809
           G   + S   +G+   +  P
Sbjct: 721 GWITLQSEEGQGSSFTLTIP 740


>gi|119469670|ref|ZP_01612539.1| putative sensor protein [Alteromonadales bacterium TW-7]
 gi|119446917|gb|EAW28188.1| putative sensor protein [Alteromonadales bacterium TW-7]
          Length = 1118

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 68/248 (27%), Positives = 121/248 (48%), Gaps = 7/248 (2%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  + + +L  AK++AE+  + KS+FLA +SHEIRTP+  ++G   +IK  +     + +
Sbjct: 585 QRIEAEQELVEAKELAEQAVAAKSEFLATMSHEIRTPMNGVLGMLNIIKQTKL----DQQ 640

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
              +      S   +L+I+ND+LD SK+E+GK+N+     +L + + E +    L   + 
Sbjct: 641 QAHHIELAQSSAESLLNIINDILDFSKMEAGKLNIDSIQFNLPKLLGEVVESFALKVEQN 700

Query: 683 RILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT--HTSNEEVIL 739
              +        +  I++D   ++QI  N++ NA+ FT +G  III+     T    +  
Sbjct: 701 NTKLILDATQITVSEIISDPNRLRQILNNLIGNAVKFTKNGDVIIIARVDDSTDGAFLEC 760

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V DTG+G+   +       F Q   S   +  GTGLGL + K + +   G   + S   
Sbjct: 761 SVIDTGIGINKNQQTSLFNSFTQADTSTTRQFGGTGLGLTIVKQLCELMDGSVNVNSVEG 820

Query: 800 KGTLIEII 807
           +G+     
Sbjct: 821 EGSTFSFS 828



 Score = 44.2 bits (103), Expect = 0.079,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 42/130 (32%), Gaps = 11/130 (8%)

Query: 450 EVMQLCSILEATSD----GIAIINREGIILSTNRAVSKLFGYPVEDILRKP--FTVFLEQ 503
              +   +LE  SD    G    N E   +  +    KLF YP+    + P   + F E 
Sbjct: 288 RQQKNERMLETMSDLAQIGAWSFNLETKQVYWSDMTKKLFKYPLNTQPQWPEDLSYFKEG 347

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM---HD 560
            +   +   L   +       +E   +    E + + + +  +    +           +
Sbjct: 348 ESRETIKPLLERAIKYGHSYEVELEVIN--GEGEAVWVLVNAEAEHKNGRCVRIFGSLQN 405

Query: 561 ISEWKQEKNK 570
           I   K+ + +
Sbjct: 406 IDTRKKIELE 415


>gi|86144435|ref|ZP_01062767.1| hypothetical protein MED222_08498 [Vibrio sp. MED222]
 gi|85837334|gb|EAQ55446.1| hypothetical protein MED222_08498 [Vibrio sp. MED222]
          Length = 880

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 81/245 (33%), Positives = 121/245 (49%), Gaps = 10/245 (4%)

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
            +L  AK+ A   +  KS FLA +SHEIRTPL  IIG +E++   +          E   
Sbjct: 372 KELIIAKEDAISANKAKSVFLANMSHEIRTPLNGIIGMAEILSQSQLSAN----QQEVLE 427

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I+ S + +L ++ND+LD+SKIESG + L      L EAV +++S++   A  K I +  
Sbjct: 428 DIESSSHSLLVLLNDILDLSKIESGNLMLSPHNADLREAVYDSVSVILSKAISKDIELDI 487

Query: 689 SFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS----NEEVILRVRD 743
           +     P ++  D   V+Q+  N+LSNAI FT  G  I     +T       ++   V D
Sbjct: 488 NIDAQTPTQLFFDEYRVRQVLTNLLSNAIKFTSKG-TITTDIAYTPMSLGRGKLECSVSD 546

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TG+G+   +LE   +PF Q   S   +  GTGLGL + + +VD   G     S    G+ 
Sbjct: 547 TGIGIEPEKLESIFEPFTQEDGSITRQFGGTGLGLAICRQLVDLMGGYITARSVKGGGST 606

Query: 804 IEIIF 808
                
Sbjct: 607 FTFCL 611


>gi|171059132|ref|YP_001791481.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
 gi|170776577|gb|ACB34716.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
          Length = 846

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 87/466 (18%), Positives = 171/466 (36%), Gaps = 35/466 (7%)

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
            A     +  SD+      +  H+I         +                         
Sbjct: 23  AAFASAWILLSDKAVEWLFSSPHSITLAATLKGWVFVAVTSVVLYVLVRRQTERERQTRA 82

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK-PF 497
           + R  +  +  E   L  +      G    +      S    V+++F             
Sbjct: 83  ERRKAEEALRAERELLAGMSAIGHIGGWSFDPLTHEGSWTEEVARIFDLDPSHPFDMATG 142

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT 557
               E  +   ++  +    +L  R   +   +  + + ++ S+  +      +      
Sbjct: 143 LSCFEGESRQRIDAAIAAACTLGTR--YDIELVLKSPKGRIKSVSTVGIPEMQNGRVVRV 200

Query: 558 ---MHDISEWKQEKNKLSHAKKIAEKESS------------------HKSDFLARVSHEI 596
              + D+SE K+   +L+  +   E                       KS FLA +SHEI
Sbjct: 201 RGYLQDLSEQKRLTQELADYRDHLEDLVRKRTVQLDEARARAEAANRAKSSFLANMSHEI 260

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTPL AI+G + +++        + +  +    ID + + +L +++D+LD+SK+E+G+  
Sbjct: 261 RTPLNAILGLARLLRRSTL----DAQQADRIAKIDDAAHHLLGLISDVLDLSKVEAGRQA 316

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716
           L  +   L   +++  + V   A  K + ++         +  D   ++Q  LN ++NA+
Sbjct: 317 LDADDFELGALMAQVGNAVAHQAAAKGLALQIQAPPAPLWLRGDAGRLRQALLNYMANAV 376

Query: 717 HFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
            FTP+G  +       +  E    +   VRD+G+G+    L +    F Q   S   R  
Sbjct: 377 KFTPTG-WVRFDVQCEAAGERAVRLHFDVRDSGIGIAPEHLPRLFNDFEQGDKSTTRRFG 435

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI--EIIFPLYDTSHP 816
           GTGLGL + +++V+   G   + S P +G+     +  P      P
Sbjct: 436 GTGLGLAVTRSLVELMGGSVGVDSAPGQGSRFWLHVTLPRGVAPSP 481


>gi|218778006|ref|YP_002429324.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218759390|gb|ACL01856.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 949

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 114/769 (14%), Positives = 240/769 (31%), Gaps = 96/769 (12%)

Query: 88  NIDAHGYLKEIS---EELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144
            +   G     +       +  G  +  + GM L  +              ++       
Sbjct: 95  RLILDGQPIYANAGSPPWNQIKGLDSEHLSGMGLIPIMHG---------AKVIACFGLAS 145

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            K    PIE       ++L A  +           G  I  +       +      ++KF
Sbjct: 146 HKLKAVPIE---ARTAVELIATTV-----------GNAIARI-----QAQEALVESEEKF 186

Query: 205 SHLHEIKKGH--SSVEKEKYDIFSQQSPPPHLRMKNKVSS--LTEYYAHKDDVLKTEKYP 260
             L E +K    S          S          +++V      ++     D      Y 
Sbjct: 187 RFLAENQKDVVLSVGLDRTIRYCSPAIKEFAGYGRDEVEGRDFLDFVVEDKDRRFLGDYT 246

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
              +++      E             +   T Q  +       +     S     ++   
Sbjct: 247 PEQAQKRDAMTVEFLFQPKNRDPFFVEIVTTRQFENNRVIALNAIMRDISKRKRAEQSLE 306

Query: 321 LTPETVDKC---PIPFFVYSHG---------NLFYANPSFLLLTKYKSVDDIEIAGGLST 368
              + +      P  F VY            ++ +A+PS   +   ++  D +    +  
Sbjct: 307 NNEKQLRSLMEAPANFAVYRLRYDPEKPLSVSVVFASPSLKTIFGIENPMDFDTWWDI-- 364

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
                 + +++              ++          +   S  +  I     +      
Sbjct: 365 ------IHEDDRTAFAQGMLISMNQMSFQRSARYCHPDGSRSGWLKVIASNTFDDMGRPE 418

Query: 429 PQNGIEPEDVDTRINKR-------KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
             NG+  +       +R       ++E    +   ++E  ++ I II +  ++   N+A+
Sbjct: 419 YTNGVVLDITGRMEAERNLIESKRELEQSEEKYRLLVENANEAIGII-QHNVLKFPNQAM 477

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ-TLEKITLGSTKEEKLLS 540
             L GY   +         +              +L  D    +L    +  +   K  +
Sbjct: 478 CSLLGYDGNETNYIDVFKQIHPLDKGRARDAFEHLLDSDEPHKSLSLRVVARSGATKWAT 537

Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
             ++  K          + D++  K  + KL  A+K+              ++H     L
Sbjct: 538 ANLVRIKWEDEPAAMAIIRDVTNEKHLETKLRQAQKM-----EAIGTLAGGIAHNFNNLL 592

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
             I+GF+E+  +         R  E    +  + +   D+V+ +L  S+ +S    +   
Sbjct: 593 NIIMGFTELTMSDMRPKT---RSRENLQQVLNASHRAKDLVSQILTFSRQDS----MEKS 645

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720
           P++L    ++A+ L+Q       +++ +        I  +   +KQ+ +N+ +NA+    
Sbjct: 646 PINLGALAADAVRLLQATLPA-TVVVNSKIPPEPCPIKGNDTQIKQLIMNLGTNAVQAMN 704

Query: 721 -SGGQIII----------STTHTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
             GG + +               +       + L V DTG GM    L +   P+     
Sbjct: 705 GKGGALSLLLDNVEAEAWELEMEAPGLLIPAIRLMVTDTGRGMDAKTLAQIFDPYFTTLE 764

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
                G+GTGLGL +   +V A+ G   + STP KGT   ++FP  + +
Sbjct: 765 P----GQGTGLGLSVVHGIVKAHGGSISVRSTPGKGTSFTVLFPRLEDA 809



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 45/410 (10%), Positives = 106/410 (25%), Gaps = 52/410 (12%)

Query: 68  LDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI 127
           ++SE  F F    +      ++     ++  S  + +  G    ++ G    D       
Sbjct: 180 VESEEKFRFLAENQ-KDVVLSVGLDRTIRYCSPAIKEFAGYGRDEVEGRDFLDFVVE--- 235

Query: 128 DPNNHIG-----DLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFG 182
           D +         +  ++++    +    P      +V I           R+F   R   
Sbjct: 236 DKDRRFLGDYTPEQAQKRDAMTVEFLFQPKNRDPFFVEIVT--------TRQFENNRVIA 287

Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHS-------SVEKEKYDIFSQQSPPPHLR 235
           +  + R  +  +   + L+     L  + +  +         + EK    S     P L+
Sbjct: 288 LNAIMRDISKRKRAEQSLENNEKQLRSLMEAPANFAVYRLRYDPEKPLSVSVVFASPSLK 347

Query: 236 MKNKVS-----SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY-TKKQYF 289
               +             H+DD     +  L++  + S      +   + ++    K   
Sbjct: 348 TIFGIENPMDFDTWWDIIHEDDRTAFAQGMLISMNQMSFQRSARYCHPDGSRSGWLKVIA 407

Query: 290 GTLQNNSKES-----------FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH 338
               ++                   + RN        ++ E      V+       +  H
Sbjct: 408 SNTFDDMGRPEYTNGVVLDITGRMEAERNLIESKRELEQSEEKYRLLVENANEAIGIIQH 467

Query: 339 GNLFYANPSFLLLTKYKSVDD-----------IEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
             L + N +   L  Y   +            ++               + +    + + 
Sbjct: 468 NVLKFPNQAMCSLLGYDGNETNYIDVFKQIHPLDKGRARDAFEHLLDSDEPHKSLSLRVV 527

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
                   A+A L  I+W  E +                 + Q       
Sbjct: 528 ARSGATKWATANLVRIKWEDEPAAMAIIRDVTNEKHLETKLRQAQKMEAI 577


>gi|323967797|gb|EGB63209.1| response regulator receiver domain-containing protein [Escherichia
           coli M863]
 gi|327252012|gb|EGE63684.1| sensor protein evgS [Escherichia coli STEC_7v]
          Length = 1197

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 87/421 (20%), Positives = 169/421 (40%), Gaps = 16/421 (3%)

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
            W+  +                  +    +       ++ +  +E ++    ++ ++  +
Sbjct: 528 TWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISFRKALSDSLPN 587

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--NTPSVMNHYLTEILSLDL 521
              ++N +G ++S N A    F          P         +  S ++    E      
Sbjct: 588 PTYVVNWQGNVISHNSAFEHYFTADYYKNAMLPLENSDSPFKDVFSNVHEVTAETKENRT 647

Query: 522 RQTLEKITLGSTKEEKL-LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
             +        T++  +     +       ++ Y     DI+E +   + L   +  A  
Sbjct: 648 IYSQVFEINNGTEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLIHALEVERNKAIN 707

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            +  KS FLA +SHEIRTP+++I+GF E++       L   + +E  +    +G  +L +
Sbjct: 708 ATVAKSQFLATMSHEIRTPISSIMGFLELLS---GSGLSKEQRVEAISLAYATGQSLLGL 764

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR---I 697
           + ++LD+ KIESG   L  + V +   V          A  K I +  + ++ +P    +
Sbjct: 765 IGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIAL--NCSSTLPERYLV 822

Query: 698 LADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMTNYELE 754
             D ++ KQ+  N+LSNA+ FT  G  +I  S  H  +   ++   + DTG G++  E +
Sbjct: 823 KIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLVHIDDNHAVIKMTIMDTGSGLSQEEQQ 882

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           +  K + Q       +  G+GLGL + K ++    G   + S P  GT   I  P+  T 
Sbjct: 883 QLFKRYSQTTAG--RQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVEITQ 940

Query: 815 H 815
            
Sbjct: 941 Q 941


>gi|298483936|ref|ZP_07002106.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
 gi|298269845|gb|EFI11436.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
          Length = 533

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 82/382 (21%), Positives = 167/382 (43%), Gaps = 21/382 (5%)

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAI--INREGIILSTNRAVSKLFGYPVEDIL 493
           E       +R++      L SI+      I +   +    +L  N +++  +G       
Sbjct: 162 EIAVREYKEREVRASKT-LSSIMNNMGVDIYVNSFDSHD-MLYANESMAAPYGDIEHFEG 219

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK-EEKLLSL-RIIIKKLPFS 551
           +K +    +  T          ++  + + T           ++    +       +   
Sbjct: 220 KKCWQALYKDKTGECEFCPKKHLIDENGQPTKVYSWDYQRPFDKCWFRVFSAAFAWIDGQ 279

Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
             + +T  DI+  K  + +L  AK+ AE     KS FLA +SHEIRTPL AI+GF+ ++ 
Sbjct: 280 IAHVITSVDINHQKTIEEELRVAKEKAENLDRLKSAFLANMSHEIRTPLNAIVGFASLLI 339

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
                        +Y + +  +  L+L +++D+LD+SKIE+G ++   + + +     + 
Sbjct: 340 ESD----DKKERQDYVDIMQENTELLLQLISDILDLSKIEAGTLDFTMDHLDIKSFCEDI 395

Query: 672 ISLVQLYANEKRILIRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
           +    +   +K + +    A ++P   I  D + + Q+  N ++NA+ FT  G QI++  
Sbjct: 396 MRNYDIK-EDKPVPVL--LAPDLPEYYIYTDKKRLMQVITNFINNALKFTNEG-QIMLEY 451

Query: 730 THT-SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
            H   + E+   V DTG+G+   ++++    F ++ +      +GTGLGL + +++++  
Sbjct: 452 RHKAESNEIEFAVTDTGMGIAPDKVDQVFDRFVKLNSF----SKGTGLGLSICRSIIEHL 507

Query: 789 MGKFYIFSTPAKGTLIEIIFPL 810
            G   + S    G+      PL
Sbjct: 508 GGTIGVESEMGVGSRFWFTHPL 529


>gi|241667026|ref|YP_002985110.1| PAS/PAC sensor hybrid histidine kinase [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240862483|gb|ACS60148.1| PAS/PAC sensor hybrid histidine kinase [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 642

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 90/518 (17%), Positives = 177/518 (34%), Gaps = 38/518 (7%)

Query: 317 EGENLTPETVDKCPI--PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
           + E      VD       + +   G +   N        YK  + +      S       
Sbjct: 12  DEEGRFRLLVDAITDYAIYMLSPEGIVTSWNAGAQRFKGYKPSEILGE--HFSRFYLEED 69

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
            +     + +                   + +     A   +         E +    I 
Sbjct: 70  RAAGLPQRALATAEEHGR---FEGEGWRRRKDGSRFWA-HVVIDPIRRPSGELIGYAKIT 125

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDIL 493
            +  + R  +  +     Q   +++  SD  I +++  G + S N    ++ GY  ++I+
Sbjct: 126 RDLTERRAAENAIRQSEEQFRRLVQGVSDYAIYMLDPVGKVSSWNFGAERIKGYRPQEII 185

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553
            + F+ F             T +         E+      K+       I+I  +     
Sbjct: 186 GQHFSTFYTPEDREAGLPE-TALGIARAEGRFEREGWRVRKDGTRFWASIVIDAIRDEEG 244

Query: 554 YSL----TMHDISEWKQEKNKLSHAKKIAEKES--SHKSDFLARVSHEIRTPLTAIIGFS 607
             L       DI+E  + +  L  A++   +             ++H+    L A++G  
Sbjct: 245 DVLGFAKITRDITEKMETQRALEQAREELFQSQKMEAIGQLTGGIAHDFNNLLMAVLGSL 304

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
           E++K +    L         +   +       +   +L  S+    +  LH EP+ +   
Sbjct: 305 EILKKRMPQDLA---LTSLVDNAMQGAQRGAALTQRMLAFSR----RQELHMEPIDVSGL 357

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727
           V   + ++   +     +I TSF   +P I+ D   ++   LN++ NA    PSGG+I++
Sbjct: 358 VRGMMDMLS-RSLGPLTMIETSFPVRLPTIVTDPNQLEMAILNLVVNARDAMPSGGRIVL 416

Query: 728 STTHT----------SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
             +                V + V D G GM    LE+A+ PF          G+GTGLG
Sbjct: 417 RASEESLPSGKGPLSPGRYVRIAVIDEGEGMDAKTLEQAITPFFTTKG----VGKGTGLG 472

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
           L + + +   + G+  + S+  +GT  E+ FP+     
Sbjct: 473 LSMVQGLASQSGGRLMMKSSLGEGTTAELWFPVALAEQ 510



 Score = 73.9 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 32/342 (9%), Positives = 91/342 (26%), Gaps = 22/342 (6%)

Query: 67  YLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH 126
            LD E  F       T    + +   G +   +    +  G    +++G           
Sbjct: 10  SLDEEGRFRLLVDAITDYAIYMLSPEGIVTSWNAGAQRFKGYKPSEILGEHFSRFYLEED 69

Query: 127 IDPNNHIGDLLKR---QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGI 183
                     L        + G+      +G+  +  + +   PI   + E  G+    I
Sbjct: 70  -RAAGLPQRALATAEEHGRFEGEGWRRRKDGSRFWAHVVID--PIRRPSGELIGYAK--I 124

Query: 184 VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSS-VEKEKYDIFSQQSPPPHLR--MKNKV 240
                         ++ +++F  L +    ++  +      + S       ++     ++
Sbjct: 125 TRDLTERRAAENAIRQSEEQFRRLVQGVSDYAIYMLDPVGKVSSWNFGAERIKGYRPQEI 184

Query: 241 SS--LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFH-TINLNQYTKKQYFGTLQNNSK 297
                + +Y  +D      +  L  +      E+E +    +  ++        +++   
Sbjct: 185 IGQHFSTFYTPEDREAGLPETALGIARAEGRFEREGWRVRKDGTRFWASIVIDAIRDEEG 244

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP--------IPFFVYSHGNLFYANPSFL 349
           +   +       +             E + +               +   NL  A    L
Sbjct: 245 DVLGFAKITRDITEKMETQRALEQAREELFQSQKMEAIGQLTGGIAHDFNNLLMAVLGSL 304

Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR 391
            + K +   D+ +   +   +   +       + +   R   
Sbjct: 305 EILKKRMPQDLALTSLVDNAMQGAQRGAALTQRMLAFSRRQE 346



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 33/426 (7%), Positives = 95/426 (22%), Gaps = 35/426 (8%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + +D  G +   +    +  G    ++IG            +       L   +     
Sbjct: 157 IYMLDPVGKVSSWNFGAERIKGYRPQEIIGQHFSTFYTPEDREAGLPETALGIARAEGRF 216

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +   W +          +    I     +  GF    I        + +   ++  ++  
Sbjct: 217 EREGWRVRKDGTRFWASIVIDAIRDEEGDVLGFAK--ITRDITEKMETQRALEQAREELF 274

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHL------RMKNKVS--SLTEYYAHKDDVLKTE 257
              +++          +D  +              RM   ++  SL +            
Sbjct: 275 QSQKMEAIGQLTGGIAHDFNNLLMAVLGSLEILKKRMPQDLALTSLVDNAMQGAQRGAAL 334

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
              +L           +   ++                          R    ++     
Sbjct: 335 TQRMLAFSRRQ-ELHMEPIDVSGLVRGMMDMLSRSLGPLTMIETSFPVRLPTIVTDPNQL 393

Query: 318 GENLTPETV---DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
              +    V   D  P        G +     +                     ++D  +
Sbjct: 394 EMAILNLVVNARDAMPSG------GRIVL--RASEESLPSGKGPLSPGRYVRIAVIDEGE 445

Query: 375 LSDNNAIKPV---MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
             D   ++                            ++   +            E     
Sbjct: 446 GMDAKTLEQAITPFFTTKGVGKGTGLGLSMVQGLASQSGGRLMMKSSLGEGTTAELWFPV 505

Query: 432 GIEPEDVDTRINK-RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490
            +  +  +    + +++E    +L          I  ++ +G++L     + +  G+ V 
Sbjct: 506 ALAEQVTEAAAERPQQVENGPRRLR---------IVAVDDDGLVLMNTTLMLEDLGHTVF 556

Query: 491 DILRKP 496
           + +  P
Sbjct: 557 EAMAGP 562


>gi|158334723|ref|YP_001515895.1| two-component hybrid sensor and regulator [Acaryochloris marina
           MBIC11017]
 gi|158304964|gb|ABW26581.1| two-component hybrid sensor and regulator [Acaryochloris marina
           MBIC11017]
          Length = 883

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 77/263 (29%), Positives = 133/263 (50%), Gaps = 20/263 (7%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  +   ++  ++  AE  +  KS FLA +SHE+RTPL AI+GFS+++       L    
Sbjct: 363 QQAELLKQVRESRDKAEAANKAKSAFLANMSHELRTPLNAILGFSQLLARDENLTL---E 419

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             +  N I+RSG+ +L ++ND+LD+SKIE+GK+ L+ +   L   +     +  L A  K
Sbjct: 420 QKQTLNTINRSGSHLLSLINDVLDMSKIEAGKIALNPKNCDLLPLLDSLQEMFALKAKSK 479

Query: 683 RILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIIST------------ 729
            +++    ++ +P  I  D   ++Q+ +N+L+NA+ FT  G  + +              
Sbjct: 480 GLVLNIQKSSQLPSHIRVDESRLRQVLINLLTNALKFTDVGS-VTLRVFTQPLPAPFSLN 538

Query: 730 --THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
             T   +  +   V DTG+G+ N EL+   + F Q  +S +   EGTGLGL +    +  
Sbjct: 539 QETLQPSLSLCFDVEDTGIGIANNELDHIFEAFIQT-SSGRRSHEGTGLGLAICHHFIHL 597

Query: 788 NMGKFYIFSTPAKGTLIEIIFPL 810
             G   I S   +GT + +  P+
Sbjct: 598 MEGDIQIQSQLGQGTTVSVQIPV 620


>gi|114769299|ref|ZP_01446925.1| Probable two-component sensor histidine kinase [alpha
           proteobacterium HTCC2255]
 gi|114550216|gb|EAU53097.1| Probable two-component sensor histidine kinase [alpha
           proteobacterium HTCC2255]
          Length = 353

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 70/359 (19%), Positives = 149/359 (41%), Gaps = 24/359 (6%)

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
             IL   +  + +++    I   N++    +    E    + F+  +   +       L 
Sbjct: 6   RYILNGLTLPVFVVDPNRKISFINKSAKMRY---TEAYSGQLFSELI---SSKKCIDALE 59

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA 574
            +L+ +   T   I          +SL  +           L+  D+S  ++ +      
Sbjct: 60  TVLNGEPNATANVILQEVVPTSFRVSLSRLDADSEPLPSCVLSFEDVSHIQEAE------ 113

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
                     + DF+A VSHE+R+PLTA+ GF E ++              +   +    
Sbjct: 114 --------QMRHDFVANVSHELRSPLTALSGFVETLQGN--AANDKEARERFLEMMSNEA 163

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
           + +  ++ DLL +SK+++ +     E V L + +S   S +   A    I ++ +F+N +
Sbjct: 164 DRMARLIGDLLSLSKLQASERVAPTEQVDLFKILSSVSSSLSGLAERNSIKLKLNFSNFM 223

Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE--EVILRVRDTGVGMTNYE 752
           P +  +   + Q+  N++ NAI ++ +G  + +S          + + + DTG G+   +
Sbjct: 224 PLVTGNADELTQVFQNLIENAIKYSGNGSVVSVSFKPPKEGKSHLCISIEDTGEGIDPTQ 283

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
           + +  + F ++   +     GTGLGL + K ++  + G   I S   KG++  +  P++
Sbjct: 284 IPRLTERFYRVDKGRSRAQGGTGLGLAIVKHILIRHRGWLKISSQLGKGSIFAVYLPIF 342


>gi|289628366|ref|ZP_06461320.1| response regulator, sensor histidine kinase component GacS
           [Pseudomonas syringae pv. aesculi str. NCPPB3681]
          Length = 841

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 76/243 (31%), Positives = 140/243 (57%), Gaps = 8/243 (3%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  A+K A + S  KS+FLA +SHEIRTPL  I+GF+ +++     P    R  +Y   
Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSELTP----RQFDYLGT 325

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I++S + +L I+N++LD SKIE+GK+ L   P +L + + + ++++   A+ K++ + + 
Sbjct: 326 IEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSL 385

Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQI---IISTTHTSNEEVILRVRDTG 745
              + P  +  D   ++QI  N++SNAI FT  G  +   ++      + ++ + V+DTG
Sbjct: 386 VYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAMLEDETEEHAQLRISVQDTG 445

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+++ ++    + F Q  NS   +  GTGLGL ++K +++   G+  + STP +G+   
Sbjct: 446 IGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFW 505

Query: 806 IIF 808
           I  
Sbjct: 506 ISL 508


>gi|254787892|ref|YP_003075321.1| MASE1/CHASE/His Kinase A/ATPase domain-containing protein
           [Teredinibacter turnerae T7901]
 gi|237684334|gb|ACR11598.1| MASE1/CHASE/His Kinase A/ATPase domain protein [Teredinibacter
           turnerae T7901]
          Length = 757

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 83/251 (33%), Positives = 138/251 (54%), Gaps = 6/251 (2%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E +++  +L+ A   A   +S KS FLA +SHE+RTPL +IIGFS  +            
Sbjct: 510 EVRKKTQELTQALDDARHANSAKSLFLASMSHELRTPLNSIIGFSVRLLKNLNQSKDPKS 569

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
           Y      I+R+G  +L+++ND+LD+SK+E+GKM++  E VSL   + E ++ +   A  K
Sbjct: 570 YRS-LEVIERNGRHLLNLINDILDLSKVEAGKMSIDREWVSLKTLLDETVTSLTPLAESK 628

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VIL 739
            + +       +  + AD + + Q+ LN++SN I +T +GG I IS+   S E    V +
Sbjct: 629 GLTLELKMVE-VANVFADQKRLAQVLLNLVSNGIKYTSTGG-ISISSRRESREGHEGVAI 686

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V DTGVG+   ++++  + + Q+         GTGLGL LA+ +V+ + G+  +FS   
Sbjct: 687 DVVDTGVGIKPEDIDRVFRRYEQLDEPSHSSEVGTGLGLALAEELVNLHGGRLSVFSEYG 746

Query: 800 KGTLIEIIFPL 810
           +G+      PL
Sbjct: 747 EGSCFTCWLPL 757


>gi|229590478|ref|YP_002872597.1| putative two-component system histidine kinase/response regulator
           fusion [Pseudomonas fluorescens SBW25]
 gi|229362344|emb|CAY49246.1| putative two-component system histidine kinase/response regulator
           fusion [Pseudomonas fluorescens SBW25]
          Length = 1184

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 109/638 (17%), Positives = 225/638 (35%), Gaps = 40/638 (6%)

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY 246
              +       KRL+   +  +   +    +++   D  S        R+ +++    + 
Sbjct: 124 VADNPQQVDRLKRLEAMQAEWNNYAQSMIDMQRSSGDYRSAVKAGRGKRLTDEIRKEYDD 183

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
               +   +  +   +T              + L+ +        L + S      L+ +
Sbjct: 184 AVAMEQQFRIARNEEVTRTTVISVTLYLAFVLGLSGFLAYIGRKNLVSLSDSYSANLASQ 243

Query: 307 NHPSLSAYFDE-GENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDI--EIA 363
              +          N   E  ++      +   G        F        V  +     
Sbjct: 244 QKIARRLEQQAWLRNGQTELAEQVLGQLTLNMLGRNIL---QFFAQYMGSVVAALYVREE 300

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
            G    +     S     +   +Y  +     A+     I+ +                 
Sbjct: 301 HGGLKRVATYGFSREQEQREQAIYSDEGIVGQAAQLDRLIRLDDVPVDYFKVSSGLGEGA 360

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
               +     + + V+  +    +     +   +LE  +         G I         
Sbjct: 361 ARSVLVMPTSDDDRVNGVLELGFLRPLQERDEELLELIA---------GNI--------- 402

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYL--TEILSLDLRQTLEKITLGSTKEEKL--- 538
             G  +E    +     +   T  +        E L     +  E+  +    +  L   
Sbjct: 403 --GTSIEAARYRQRLQEVLAETQQLNEELQVQQEELKTANEELEEQSRILKESQAHLETQ 460

Query: 539 -LSLRIIIKKLPFSSCYSLTMHDISEWK-----QEKNKLSHAKKIAEKESSHKSDFLARV 592
              L    ++L   +       D  + K     Q + +L    +  ++ S +KS+FLA +
Sbjct: 461 QAELEQTNEQLAEQTQTLAEQRDAMDRKNVELNQAQLELEDRAEELQRSSKYKSEFLANM 520

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHE+RTPL + +  ++++       L     +++A  I  +GN +L+++ND+LDISK+E+
Sbjct: 521 SHELRTPLNSSLILAKLLAENPQENLSAE-QVKFAESIYSAGNDLLNLINDILDISKVEA 579

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNI 711
           GK+ +  E  S+   V     + +  A ++++  +       P +L  D + ++QI  N+
Sbjct: 580 GKLEVRPENSSVARLVDGLRGMFEPLAADRKLGFQVDVQEGSPTMLFTDRQRLEQILKNL 639

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           LSNAI FT  G  + +S +    E +   VRD+G+G+   + E   + F Q   +   R 
Sbjct: 640 LSNAIKFTEQG-DVSLSVSRAPGEGIAFTVRDSGIGIAPDQQESIFEAFRQADGTTNRRY 698

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            GTGLGL +++ +     G   + S P KG++  ++ P
Sbjct: 699 GGTGLGLSISRDLAALLGGYISVASEPGKGSIFTLVLP 736


>gi|90022761|ref|YP_528588.1| Signal transduction histidine kinase-like protein [Saccharophagus
           degradans 2-40]
 gi|89952361|gb|ABD82376.1| ATP-binding region, ATPase-like protein [Saccharophagus degradans
           2-40]
          Length = 861

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 68/248 (27%), Positives = 115/248 (46%), Gaps = 10/248 (4%)

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + +++L    +   +    KS+FLA +SHEIRTP+  +IG    + +       +P    
Sbjct: 180 RLRHRLKQKNEELSEALKAKSEFLANMSHEIRTPMNGVIG----MLDVALLSETSPEKHR 235

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           Y +    S   +L I+ND+LD SK+E+GK+ L      +D+ V E +      A +  + 
Sbjct: 236 YLSVARNSAQSLLGIINDILDFSKVEAGKLELEAIDTDIDDLVHEVLVNFSGLAEQNDVE 295

Query: 686 IRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS--NEEVILR-- 740
           +    +  I   +  D   +KQI  N++ NA+ FTP G ++++        +  + L   
Sbjct: 296 LIADISPTISHLVKCDPGRIKQILNNLVGNALKFTPHG-EVLVKARAEKLVSGRIQLHFL 354

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           VRDTG+G+     +     F Q   S   +  GTGLGL +AK + +   G   + S   K
Sbjct: 355 VRDTGIGIAAQNQKHLFDSFTQADTSTTRKYGGTGLGLSIAKRLCETMNGAISLESYEGK 414

Query: 801 GTLIEIIF 808
           G+      
Sbjct: 415 GSTFAFFI 422


>gi|220908400|ref|YP_002483711.1| multi-sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7425]
 gi|219865011|gb|ACL45350.1| multi-sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7425]
          Length = 500

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 86/465 (18%), Positives = 181/465 (38%), Gaps = 15/465 (3%)

Query: 358 DDIEIAG--GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
             +E         +L    L D   +  +   ++    +                     
Sbjct: 44  AALEQLNKTAFDVILLDLSLPDAQGLDTIAQVQAAVPYLPIVVLTGLQDKTIARQAVAQG 103

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
                                 ++     R+++        +   T   +++++ +G++L
Sbjct: 104 AQDYLVKGQLSVELLLKTVSYAIERTQILRRLQESENCFRGVFNQTFQFMSLLSPDGVVL 163

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT-EILSLDLRQTLEKITLGSTK 534
             N+   ++ G+  E ++           +      +L   +L     +T++      T 
Sbjct: 164 DINQVTREVSGFQDEAVINTFIWEAPYWQSSEQSKRWLETAVLRAAQGETIQSELQSCTS 223

Query: 535 EEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
           ++  L L   IK L  S            DIS+ K+ + ++  + +  ++ S  K+ F++
Sbjct: 224 DQIPLWLDFSIKPLKNSKGDINLLIAEGRDISKLKRAEAEIRRSLEKEQELSQMKNKFIS 283

Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650
            +SHE R+P+  I    +++++     L     I++   +  S +  L +++++L + + 
Sbjct: 284 MISHEFRSPMAIISSAIDLLEDNE---LSEDEKIKFYQKMRSSIDQTLQLIDEVLLLGRA 340

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710
            +G++ L   P+ L++  SE +  +QL    +   I         ++  D   +KQI  N
Sbjct: 341 -TGRVELEHSPLDLEKYCSEIVETLQLTTGREH-QIIYVCEGTSGQVGMDSFLLKQIIDN 398

Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           +LSNAI ++P  G I  + +  SN + I  ++D G+G+   +  K    F +       +
Sbjct: 399 LLSNAIKYSPKSGMIRFTLSLQSN-QAIFCIQDWGIGIPEQDQAKLFTAFKRA--GNVYK 455

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            +GTGLGL + K  VD   GK  + S    GT   +  PL  T  
Sbjct: 456 IQGTGLGLAIVKQCVDLLHGKIEVESQEGCGTTFTVTLPLSLTEA 500


>gi|332712276|ref|ZP_08432204.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
 gi|332349082|gb|EGJ28694.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
          Length = 549

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 77/270 (28%), Positives = 143/270 (52%), Gaps = 27/270 (10%)

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG------NPRYI 624
           L  AK+ AE  +  KS+FLA +SHE+RTPL  I+G++++++                + +
Sbjct: 141 LQEAKEKAEVANQAKSEFLANMSHELRTPLNGILGYAQILQRDAALAASKGERNLTAKQL 200

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           E    I +SG+ +L ++ND+LD+SKIE+GKM L+    +L   + E + ++++ A+EK I
Sbjct: 201 EGLKIIQKSGSHLLTLINDILDLSKIEAGKMALYPTEFNLLTFLEEVVGIIRMRASEKNI 260

Query: 685 LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE------- 736
           ++R     N+P  + AD + ++Q+ +N+L NA+ FT  G  +  +     ++        
Sbjct: 261 VLRFEQNTNLPTGVKADEKRLRQVLINLLDNAVKFTDQG-NVTFNVGVIEDQNPTSLDQG 319

Query: 737 ---------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
                    +   V DTG+G++  +LE   +PF Q  +S+     GTGLGL +++ +V+ 
Sbjct: 320 KDSQIQHRTIRFEVIDTGIGISPQQLETIFQPFEQTGDSKYRAA-GTGLGLAISRQLVEF 378

Query: 788 NMGKFYIFSTPAKGTLIE--IIFPLYDTSH 815
              +  + S   KG++    +  P+   + 
Sbjct: 379 MGSQLNVKSELIKGSMFWFDVALPVVKVTE 408


>gi|229010405|ref|ZP_04167609.1| hypothetical protein bmyco0001_8650 [Bacillus mycoides DSM 2048]
 gi|228750825|gb|EEM00647.1| hypothetical protein bmyco0001_8650 [Bacillus mycoides DSM 2048]
          Length = 896

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 77/340 (22%), Positives = 150/340 (44%), Gaps = 29/340 (8%)

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
            G  +  I+ +     L   + ++        +  +  QT  +      +E +  + ++ 
Sbjct: 406 LGLTIHSIMGRMRIQTLLHESQAMTEEL---QVQSEELQTQAEELQMQAEELRTTNEQLE 462

Query: 545 IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
            +               ++ +  K++L        + S +KS+FLA +SHE+RTPL +I+
Sbjct: 463 SRTEEAEQKT-------TDLEITKSELEEKASEILRSSKYKSEFLANMSHELRTPLNSIL 515

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
             SE+++      L +    E A  I  SG  +L ++ND+LD+SK+E+GK+++ FE  ++
Sbjct: 516 LLSEMLRENHDNHLSDDEI-ELATVIHSSGKDLLTLINDILDLSKVEAGKLDVIFEATNI 574

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGG 723
            +  +         A +K + +  + ++ IP +   D + ++QI  N+LSNA  FT  G 
Sbjct: 575 SDMAANMQQNFLHIAAQKNVELTIADSDIIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGS 634

Query: 724 QIIISTTHTS--------------NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
              +S    S               + + + V+DTG+G+   + +   + F Q   +   
Sbjct: 635 ---VSLHFDSIETTNLSHDMQSISKDWMTISVKDTGIGIATEQHQLIFEAFQQADGATIR 691

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +  GTGLGL + K       G   + S   +G+   +  P
Sbjct: 692 KYGGTGLGLSICKEFARLLGGWITLESNLGEGSTFTVYIP 731


>gi|90023479|ref|YP_529306.1| two-component sensor PhoR [Saccharophagus degradans 2-40]
 gi|89953079|gb|ABD83094.1| ATP-binding region, ATPase-like protein [Saccharophagus degradans
           2-40]
          Length = 434

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 74/404 (18%), Positives = 159/404 (39%), Gaps = 34/404 (8%)

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI---NKRKMEIEVMQLCSILEATSDGI 465
            +  +              +     E   +  +     K +++  V ++  +  A +DG+
Sbjct: 53  EAWIIAARRKTNPRNELYGIFGEIAEDVVLLRKRYQKEKLRLQAVVSRVQDMTSALTDGV 112

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
            +++  G I   N A  ++F    +       T  +          ++    +      L
Sbjct: 113 VLLDSLGNIEWWNEAAKQMFDL-RDVDHGHKLTNIIRHPR------FVKYFENGKYGDPL 165

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
           E    G    ++ L  +I            + + D++   + +                +
Sbjct: 166 ELE--GIRHPDQHLQFQIHPF---GQGERLVVLRDVTRVYKLE--------------QMR 206

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
            DF+A VSHE+RTPLT + G+ E + +    P   P +      +      +  ++NDL+
Sbjct: 207 KDFVANVSHELRTPLTVVRGYIETLSD---APSIPPAWARALTAMQGQCQRMTALINDLI 263

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
            ++K+E+ +  +  E V +   +   +S  Q    E    +     +N+  +  + + ++
Sbjct: 264 TLTKLETDEREIRQEAVDIGPLIQTIMSDAQALNGESTHTLIHKGDDNL-VLRGNEKELR 322

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
               N++ NA+ ++P G +I +  T   ++ V++ V DTGVG+    L +  + F ++  
Sbjct: 323 SAVSNLVFNAMKYSPDGCKIEVQYTANEHD-VVISVSDTGVGIDPKHLPRLTERFYRVDG 381

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            +     GTGLGL + K ++  +  +  I S   KG+     FP
Sbjct: 382 GRATTMGGTGLGLAIVKHVLLRHDAQLRISSKVGKGSTFSCHFP 425


>gi|75911081|ref|YP_325377.1| PAS/PAC sensor signal transduction histidine kinase [Anabaena
           variabilis ATCC 29413]
 gi|75704806|gb|ABA24482.1| PAS/PAC sensor signal transduction histidine kinase [Anabaena
           variabilis ATCC 29413]
          Length = 971

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 118/809 (14%), Positives = 254/809 (31%), Gaps = 97/809 (11%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK-RQNTW 143
           F    D       +S    + I     ++       +    H +    + + +     T 
Sbjct: 179 FCLKPDGTMTFPYVSSGCRELIERSPQELQD-DASLIFANTHPEDMIGLQEAIANSAKTL 237

Query: 144 YGKTTLWPI-EGTNLYVPIDLAALPIYSRNREFSGFRGF-------GIVHVNRVDNDPRA 195
                 W I   +     +   + P      E + +           ++   +  +    
Sbjct: 238 QNFEYEWRIITSSGQIKWVQGVSRPERQPGGEITWYGYLLDISEQQAVLRERKQADQQLQ 297

Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS------LTEYYAH 249
              +L +      +       V  ++ +    +  P   R+     +        E    
Sbjct: 298 QQAQLLQSIWEGVDYGICVLDVLDDEAEFRYVKINPAMHRISLLPVASFIGKTTAESLPP 357

Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
           +   L  ++Y        SL  +++F  +N  +         L +++ +  + +      
Sbjct: 358 EIADLYRQRYQQCIKSRKSLVFEDNFL-VNDKETWWFVNITPLGDSNSQISQLVVTATEI 416

Query: 310 SLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
           +     ++   L    ++       F    G   + N + L L     +D ++    +  
Sbjct: 417 TERKQAEQERQLFVSLIENSSDFIGFATLAGKPLFLNEAGLKLVGLDGLDALKNLHIMDF 476

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
                +       K +M   ++R       R    Q + E  +        K+++  + +
Sbjct: 477 FFPEDQEY---MDKHIMRVVNERGLWQGEYRFRNYQTHEEIPVDFNIF-TVKSSETGKPL 532

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN----REGIILSTNRAVSKL 484
               +  +  + R  +  ++ +   L +I E     I +++     +      N    + 
Sbjct: 533 CLATVTRDIQERRKVEALLQEQEQFLRNIYEGVDQIIFVVDVLENLDFCYTGWNSTAERY 592

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
            G    D + K           S++       +   +  + E       +E   L+ +I 
Sbjct: 593 TGITRNDAIGKAPEDIFGSVEGSLVRQRYKNCVEAGVSISFEDCLTFHNQETWWLT-KIN 651

Query: 545 IKKLPFSSCYSLTMH--DISEWKQEKNKLSHAKKIAEKESSHK----------------S 586
             K      Y L     DI++ KQ + +L    +  E                       
Sbjct: 652 PLKNSAGRVYCLVGTTLDITQRKQNEIQLRQQAENLENTLRELQLTQTQLIHSEKMSSIG 711

Query: 587 DFLARVSHEIRTPLTAIIG-------FSEVIKN-----QRFGPLGNPRYIEY-------- 626
           + +A V+HEI  P+  I G       +++ +       +   P       E+        
Sbjct: 712 NMVAGVAHEINNPVNFIHGNLIPASEYAQDLLQLVELYRLHFPYPPEEIQEFIIDIEFDF 771

Query: 627 --------ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
                      +      + +IV  L + S+++       F+ V + E +   + ++Q  
Sbjct: 772 LKEDLVKLLQSMRIGTQRIREIVLSLRNFSRLD----EAEFKQVDIHEGIDSTLMILQNR 827

Query: 679 ANEK----RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS----------GGQ 724
              K     IL+  S+  ++P I      + Q+ +N++SNAI                  
Sbjct: 828 LKAKSDHPEILVVKSY-GDLPLIDCYPGQLNQVFMNLISNAIDALEEPVVDGQLSVAKPT 886

Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
           I I +   +N  V + + D GVG+    L K   PF    +     G+GTGLGL ++  +
Sbjct: 887 IYIRSEMFNNNWVRVTISDNGVGIPQEILSKLFDPFFTTKS----VGKGTGLGLSISYQI 942

Query: 785 -VDANMGKFYIFSTPAKGTLIEIIFPLYD 812
            VD + GK    STP +G    I  P++ 
Sbjct: 943 VVDRHNGKLTCNSTPGQGAEFIIEIPIHQ 971



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 68/543 (12%), Positives = 140/543 (25%), Gaps = 69/543 (12%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D+       S    +        ++G    DV   + +   N     L        + TL
Sbjct: 48  DSEMRYLLASRRWREDYDLVDENIVGRSHHDVCPEITLGWQNRYECCLAGNTEKSEEETL 107

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNR-----VDNDPRALGKRLDKKF 204
              +GT  +V  ++   P Y  + E  G      V   R        D     +  + + 
Sbjct: 108 IRRDGTIDWVKWEIN--PWYEPSGEVGGLAVVSEVITPRKQSDIALADSERRLRDTEARL 165

Query: 205 SHLHEIKKGHS----------------------SVEKEKYDIFSQQSPPPHLRMKNKVSS 242
             L +   G                         +E+   ++    S          +  
Sbjct: 166 QRLADNLPGMLYEFCLKPDGTMTFPYVSSGCRELIERSPQELQDDASLIFANTHPEDMIG 225

Query: 243 LTEYYAHKDDVLKTEKYPL----LTSEESSLPEQEDFHTINLNQYTKK----QYFGTLQN 294
           L E  A+    L+  +Y       + +   +            + T              
Sbjct: 226 LQEAIANSAKTLQNFEYEWRIITSSGQIKWVQGVSRPERQPGGEITWYGYLLDISEQQAV 285

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKY 354
             +        +    L     EG +     +D         +       NP+   +   
Sbjct: 286 LRERKQADQQLQQQAQLLQSIWEGVDYGICVLDVLDD----EAEFRYVKINPAMHRI--- 338

Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
                + +A  +          +   +      +  ++  +     + +  ++E    + 
Sbjct: 339 ---SLLPVASFIGKTTAESLPPEIADLYRQRYQQCIKSRKSLVFEDNFLVNDKETWWFVN 395

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII 474
             P    +   +         E  + +      E E     S++E +SD I      G  
Sbjct: 396 ITPL--GDSNSQISQLVVTATEITERKQA----EQERQLFVSLIENSSDFIGFATLAGKP 449

Query: 475 LSTNRAVSKLFGYPV-EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL-GS 532
           L  N A  KL G    + +       F        M+ ++  +++       E       
Sbjct: 450 LFLNEAGLKLVGLDGLDALKNLHIMDFFFPEDQEYMDKHIMRVVNERGLWQGEYRFRNYQ 509

Query: 533 TKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
           T EE  +   I   K   +    C +    DI E ++ +  L             +  FL
Sbjct: 510 THEEIPVDFNIFTVKSSETGKPLCLATVTRDIQERRKVEALL-----------QEQEQFL 558

Query: 590 ARV 592
             +
Sbjct: 559 RNI 561


>gi|125974417|ref|YP_001038327.1| periplasmic sensor signal transduction histidine kinase
           [Clostridium thermocellum ATCC 27405]
 gi|125714642|gb|ABN53134.1| periplasmic sensor signal transduction histidine kinase
           [Clostridium thermocellum ATCC 27405]
          Length = 463

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 73/240 (30%), Positives = 124/240 (51%), Gaps = 7/240 (2%)

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           L++  +    +   K+DF+A +SHE+RTPLT+I+G+   I +            E  + I
Sbjct: 231 LNYMAQEVANQQKMKNDFIASISHELRTPLTSIMGWIITINSGDID--SKEELKEGLDII 288

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
           +R    + ++V++LLD SK ++G + L    V+L E +      ++  A  K I +    
Sbjct: 289 ERESKRLAELVDELLDFSKFDAGIITLRKSVVNLGELLKYIKRQMEPRAERKGITMTIDV 348

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
             ++P I AD   +KQ+ +NI+ N+  FT  GG I I      N  V++R+ D+G G+  
Sbjct: 349 DEHLPLIEADENRLKQVFINIIDNSFKFTQKGGYIDIIGRKNENG-VLIRIEDSGCGIPE 407

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            +L +  + F +  N       G+GLGL +   +V  + GK  I ST  KGT +++I P+
Sbjct: 408 EDLPRVKQRFFKGSNVVS----GSGLGLAICDEIVRLHNGKIDIESTVGKGTRVDVILPV 463


>gi|323497303|ref|ZP_08102322.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio sinaloensis
           DSM 21326]
 gi|323317660|gb|EGA70652.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio sinaloensis
           DSM 21326]
          Length = 851

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 83/387 (21%), Positives = 164/387 (42%), Gaps = 32/387 (8%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREG-IILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
           +++  +  Q   +   +   + + + +   ++  N A  + F            +    +
Sbjct: 349 KRLNEQEKQFADLFNFSLSPVTLWSTDQAKLIRYNPAAERCFK-----------SDVSRE 397

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDIS 562
                ++ ++           +         + K     +       +         DI+
Sbjct: 398 QLVEALSSHVKMCAQGATLTGVNTTI-----DGKTYRWNLSPIVSDNTTKQIMAQGQDIT 452

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
            + + + +   AK+ AE+ +  ++DFLA++SHE+RTPL  I+G S+++K+     L    
Sbjct: 453 SFVEAERQSQAAKEEAEESARVRADFLAKMSHELRTPLNGILGVSQLLKH----SLDERD 508

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
            +E+   +  SG  +L ++ND+LD SKIE GK ++      L E  +    + +    EK
Sbjct: 509 ALEHVEVLCNSGEHLLAVLNDILDFSKIEQGKFHIQCAEFRLIELETTVEKIFRPLCIEK 568

Query: 683 RILIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EVI 738
            I +             +D   + QI  N++SNAI FT  G  + +S +    +   ++ 
Sbjct: 569 GINLDMQSDVTEKMWANSDQVRLNQILFNLVSNAIKFTHHG-HVTVSLSCYPQDGRYQLR 627

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           + V DTG+G+++ +L    +PF Q   +      G+GLGL +  ++ +   G+  I S  
Sbjct: 628 MSVTDTGIGISDAQLATIFEPFIQAEATTTREYGGSGLGLAIVHSLAELMNGEVTIESQL 687

Query: 799 AKGTLIEIIFPL-----YDTSHPHDCI 820
            KGT I    PL       +  P++ I
Sbjct: 688 DKGTRISATLPLDIAITERSVEPNNMI 714


>gi|229897321|ref|ZP_04512477.1| putative Histidine protein kinase sensor [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|4106623|emb|CAA21378.1| unnamed protein product [Yersinia pestis]
 gi|229693658|gb|EEO83707.1| putative Histidine protein kinase sensor [Yersinia pestis biovar
           Orientalis str. PEXU2]
          Length = 803

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 89/378 (23%), Positives = 168/378 (44%), Gaps = 16/378 (4%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG---YPVEDILRKPF 497
           R   + +   ++Q  SI+ A    + I    G +   N   + +     Y + +   +P 
Sbjct: 109 RRQAKLLHARLLQQESIINALPFAVFIRTASGELAVYNSHFADVHSDKLYDMLNQTHEPA 168

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF-SSCYSL 556
              +       ++ Y   +L     Q ++           +  + + I  L         
Sbjct: 169 HWPMTSPLDREIDKYCRSVLLNRKPQLVDLSVEIK---GDIRDIFLWIIPLNNAEQGVLG 225

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
              DIS+ K  + +L  A+  AE  +  KS FLA +SHE+RTP+ AI+G  E+       
Sbjct: 226 GWLDISQRKTVERQLEAARVEAESANRTKSTFLATISHELRTPMYAIMGLLELEIRS--- 282

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
               P   +    + +S   ++ +++D++D +KIE+G++++H   V   + +    +L Q
Sbjct: 283 --NRPVEKDTLVTVSKSAQSLMLLLDDIIDSAKIEAGQLSIHPTAVDFHQEMERMFTLYQ 340

Query: 677 LYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSN 734
             ANE+ +       ++IP + +AD+  V+Q+  N+L NA+ FT  G   + I+   +  
Sbjct: 341 PIANERGLRFSGWLDDHIPPLLMADMLRVRQVMGNLLGNALKFTEQGSVSVDITWEPSDE 400

Query: 735 EEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
           +  +  + + DTG+G++        +PF Q    +  R  G+GLGL +   ++    GK 
Sbjct: 401 QHGVMNIDITDTGIGISPAAQATLFQPFSQANEGKSPRFGGSGLGLWICHQLIHKMGGKI 460

Query: 793 YIFSTPAKGTLIEIIFPL 810
            + S   KGT + I  PL
Sbjct: 461 ALESQLGKGTSLLITLPL 478


>gi|327189004|gb|EGE56192.1| putative two-component sensor histidine kinase protein [Rhizobium
            etli CNPAF512]
          Length = 1211

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 104/783 (13%), Positives = 236/783 (30%), Gaps = 71/783 (9%)

Query: 79   IPRTVRFTWNIDAHGYLKEISEELPK----------TIGNYAFKMIGMRLCDVSDILH-I 127
                VR  W+++  G     ++                G  + + +   L  +       
Sbjct: 453  DAVPVR-VWSVEPTGGSIYFNKRYQDHFRAVIADFDAAGEPSIEDL---LQQLIHPEDAP 508

Query: 128  DPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187
            D    +    +  +    +      +G  +Y   +    P    + +    + +G+    
Sbjct: 509  DVQRTLRQCFESGDGTAMRFRWREQDG--VYRWAECRVEPRRDEDGKVV--QWYGVSLDV 564

Query: 188  RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKY----------DIFSQQSPPPHLRMK 237
              +       +  +++ S L ++                      D F            
Sbjct: 565  DEEVRALEALRDRERELSQLVDMVPAQIRRLTPTGEPVFFNKRLIDFFGLDVGDMDQPGV 624

Query: 238  NKVSSLTEYYAHKDDV-LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS 296
            +++S++     H DD     +              +      +            L++ +
Sbjct: 625  SRLSAVINTLVHPDDAPRLLQTVHRSLVSGDPFSIKYRMRRFDGAYRWVDGRAEPLRDQN 684

Query: 297  KESFEYLSHRNHP----SLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLL 351
                ++                  E E    + VD  P   +     G   + N   +  
Sbjct: 685  GAITQWYVISVDIDDEMRAQEALRERERELSQLVDMVPSLLWRLDQDGTPTFFNQRLIDF 744

Query: 352  TKYKSVDD-IEIAGGLSTLLDAPKLSDNNA--IKPVMLYRSDRTCIAASARLHTIQWNRE 408
                 +D  +     L+ L++A    D+ A   + +    +     +   RL   +    
Sbjct: 745  LGLDIIDMKMPGLTRLAALIEAAVHPDDAASLTEALHHSLATGERFSKQYRL---RRADG 801

Query: 409  NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468
                +        ++    +   G+  +  D    + ++      L  I+E     I   
Sbjct: 802  VYRWVRGSAEPLRDENGRIIQWYGLTHDIDDQLRIEEELRERERSLWQIVETLPAMIDCA 861

Query: 469  NREGIILSTNRAVSKLFGYPVEDILRK-------PFTVFLEQNTPSVMNHYLTEILSLDL 521
              +G  +  N  +    GY +E++               +  +  + +   L    SL  
Sbjct: 862  APDGEPVYRNPRLRDFLGYKLEELDGTGKTRLDGTLDAGVHPDDVASVK--LDYAHSLRT 919

Query: 522  RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS----LTMHDISEWKQEKNKLSHAKKI 577
             +   +       + +   +      +  +        +   DI    + +  L   ++ 
Sbjct: 920  GEPYARRHRLRRFDGEYRWVETRAAPMRNAEGVIVQWNVICLDIDGEVRAEEDLRQVREG 979

Query: 578  AEKESS--HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN-PRYIEYANYIDRSG 634
              + S     ++  A ++HE+  PL A++  S   +        N  R       I R  
Sbjct: 980  LARASQVASLAELSASIAHEVNQPLAAVVANSHACQRWLMADPPNMQRAQRTVERIIRDA 1039

Query: 635  NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
            N   D+V+ +  + K  + +        +L   V+EA SL+   A  +R  I  S  +N+
Sbjct: 1040 NSAADVVSRIRALFKQSADR----RVHTALSGVVNEARSLMADEAARRRARIEVSVDDNL 1095

Query: 695  PRILADLRSVKQIALNILSNAIHFTP--SGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752
            P I  D   ++Q+ +N++ N I      +G + I          +   + D G GM    
Sbjct: 1096 PLIAVDRTQIQQVLINLIRNGIEAMDGVAGDKAIEMRVRHMGNTIQTEISDRGYGM--EF 1153

Query: 753  LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
             EK  +PF            G G+GL + +++V+ + G+ +       G  +    P+  
Sbjct: 1154 PEKMFEPFFTTKEH------GMGMGLAICRSIVELHGGRLWAEKNQPHGATLIFTLPIET 1207

Query: 813  TSH 815
             + 
Sbjct: 1208 KAA 1210



 Score =  153 bits (386), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 50/531 (9%), Positives = 144/531 (27%), Gaps = 43/531 (8%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKM-------IGMRLCDVSDILH-IDPNNHIGDLL 137
            W +   G     ++ +   +G             +   +  +       +    +   L
Sbjct: 326 VWRLTPEGEPTFFNKRMVDFLGLDVADSDKPDMSRLEAVVLAIVHPDDTAEFRTALSHCL 385

Query: 138 KRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG 197
               T+  +  L   +G  +Y  +   A P+  +       + +G+ H            
Sbjct: 386 LTGETFAMRYRLRRADG--VYRWMSSRAEPLRDQAGNV--LQWYGLCHDIDDQVHAEEAL 441

Query: 198 KRLDKKFSHLHEIKKGHSSVEKEKY----------DIFSQQSPPPHLRMKNKVSSLTEYY 247
           ++ +++   + +         +             D F           +  +  L +  
Sbjct: 442 RQSERQLQQMIDAVPVRVWSVEPTGGSIYFNKRYQDHFRAVIADFDAAGEPSIEDLLQQL 501

Query: 248 AHKDDVLKTEKY-PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
            H +D    ++              +  +   +      +      ++   +  ++    
Sbjct: 502 IHPEDAPDVQRTLRQCFESGDGTAMRFRWREQDGVYRWAECRVEPRRDEDGKVVQWYGVS 561

Query: 307 NH----PSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVD-DI 360
                         + E    + VD  P     +   G   + N   +        D D 
Sbjct: 562 LDVDEEVRALEALRDRERELSQLVDMVPAQIRRLTPTGEPVFFNKRLIDFFGLDVGDMDQ 621

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
                LS +++     D+       ++RS  +    S +    +++      +       
Sbjct: 622 PGVSRLSAVINTLVHPDDAPRLLQTVHRSLVSGDPFSIKYRMRRFDGA-YRWVDGRAEPL 680

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
            +Q         I  +  D    +  +     +L  +++     +  ++++G     N+ 
Sbjct: 681 RDQNGAITQWYVISVDIDDEMRAQEALRERERELSQLVDMVPSLLWRLDQDGTPTFFNQR 740

Query: 481 VSKLFGYPVEDILRKPFTVF-------LEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
           +    G  + D+     T         +  +  + +   L   L+   R    K      
Sbjct: 741 LIDFLGLDIIDMKMPGLTRLAALIEAAVHPDDAASLTEALHHSLATGER--FSKQYRLRR 798

Query: 534 KEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEK 580
            +     +R   + L   +     +    HDI +  + + +L   ++   +
Sbjct: 799 ADGVYRWVRGSAEPLRDENGRIIQWYGLTHDIDDQLRIEEELRERERSLWQ 849



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 39/333 (11%), Positives = 84/333 (25%), Gaps = 20/333 (6%)

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
             + +  PE +    I L  +        L   +      L+  +         E E   
Sbjct: 256 AGQFAGDPESQKNKQIMLQLFLAISALSALIVAAISRQHQLATLSLHQSLEALREREREL 315

Query: 323 PETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVD-DIEIAGGLSTLLDAPKLSDNNA 380
            + VD  P   + +   G   + N   +        D D      L  ++ A    D+ A
Sbjct: 316 SQLVDMVPSHVWRLTPEGEPTFFNKRMVDFLGLDVADSDKPDMSRLEAVVLAIVHPDDTA 375

Query: 381 IKPVMLYRS--DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
                L          A   RL   +        M+       +Q    +   G+  +  
Sbjct: 376 EFRTALSHCLLTGETFAMRYRL---RRADGVYRWMSSRAEPLRDQAGNVLQWYGLCHDID 432

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG--YPVEDILRKP 496
           D    +  +     QL  +++A    +  +   G  +  N+     F       D   +P
Sbjct: 433 DQVHAEEALRQSERQLQQMIDAVPVRVWSVEPTGGSIYFNKRYQDHFRAVIADFDAAGEP 492

Query: 497 -----FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
                    +       +   L +         +        ++         ++     
Sbjct: 493 SIEDLLQQLIHPEDAPDVQRTLRQCFESGDGTAMRF--RWREQDGVYRWAECRVEPRRDE 550

Query: 552 SC----YSLTMHDISEWKQEKNKLSHAKKIAEK 580
                 +     D+ E  +    L   ++   +
Sbjct: 551 DGKVVQWYGVSLDVDEEVRALEALRDRERELSQ 583



 Score = 62.7 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/188 (8%), Positives = 51/188 (27%), Gaps = 13/188 (6%)

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
           +  +   F+     +           +   +    +   +     +L  +++     +  
Sbjct: 269 KQIMLQLFLAISALSALIVAAISRQHQLATLSLHQSLEALRERERELSQLVDMVPSHVWR 328

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVF-------LEQNTPSVMNHYLTEILSLD 520
           +  EG     N+ +    G  V D  +   +         +  +  +     L+  L   
Sbjct: 329 LTPEGEPTFFNKRMVDFLGLDVADSDKPDMSRLEAVVLAIVHPDDTAEFRTALSHCLLTG 388

Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKK 576
             +T          +     +    + L   +     +    HDI +    +  L  +++
Sbjct: 389 --ETFAMRYRLRRADGVYRWMSSRAEPLRDQAGNVLQWYGLCHDIDDQVHAEEALRQSER 446

Query: 577 IAEKESSH 584
             ++    
Sbjct: 447 QLQQMIDA 454


>gi|300310593|ref|YP_003774685.1| phosphate regulon two-component sensor kinase transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
 gi|300073378|gb|ADJ62777.1| phosphate regulon two-component sensor kinase transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 436

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 70/380 (18%), Positives = 148/380 (38%), Gaps = 34/380 (8%)

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
              +     D   N+ ++   + +    +    DG+ I++    +   N A  +  G  +
Sbjct: 79  YARLYRMRRDDEKNQAELAEWLARFRQAMSLLPDGVVIMDDVLFLEWCNPAAQQHLGLKL 138

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
           +       T  +          ++  I+     Q L           +++          
Sbjct: 139 DRDKGMRVTNLIRNP------AFIDYIILGRYEQPLTMTLHERKLIIQIIPFE------- 185

Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
            +    L  HD++E ++                  + DF+A  SHE+RTPLT I GF E+
Sbjct: 186 -NRRQILVTHDVTESERI--------------DMMRRDFVANASHELRTPLTVINGFLEI 230

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
              Q    L     + +   +   G  + ++++D+L ++++ES    L  E + +   + 
Sbjct: 231 ALAQP--NLEEGTRMAHLKLMTEQGQRMQNLIDDMLTLTRLESIDYPLRTEVLRVRPLLE 288

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
                 +  +  K   I  +     P +  +   ++    N+++NA+ +TP GG+I +  
Sbjct: 289 RIAEEGRALSAGKH-EIVLTIDG--PDLKGNAEELRSAFTNLVTNAVRYTPEGGRISLRW 345

Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
                      V+DTG+G++   + +  + F ++  S+    +GTGLGL + + ++  + 
Sbjct: 346 QSDEQG-AHFAVQDTGIGISPEHISRLTERFYRVDKSRSRETQGTGLGLAIVRHVLLRHH 404

Query: 790 GKFYIFSTPAKGTLIEIIFP 809
               I S P  G+   + FP
Sbjct: 405 ATLEIASVPDHGSTFTVHFP 424


>gi|284035090|ref|YP_003385020.1| multi-sensor signal transduction histidine kinase [Spirosoma
           linguale DSM 74]
 gi|283814383|gb|ADB36221.1| multi-sensor signal transduction histidine kinase [Spirosoma
           linguale DSM 74]
          Length = 1153

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 69/255 (27%), Positives = 113/255 (44%), Gaps = 4/255 (1%)

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
               +     +        K+ F   +SHE RTPLT ++G  E +       L    Y +
Sbjct: 324 HAYQEEQKRAEALAAIDQAKTAFFNNISHEFRTPLTLMLGPLEELLQD--TALQESTYKQ 381

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
                 R+   +L +VN+LLD S+IE+G++   F PV L     +  S  +       + 
Sbjct: 382 PIEATHRNALRLLKLVNNLLDFSRIEAGRVKASFRPVDLVGLTVDLASSFRSLIERAGLE 441

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +          + AD    +++ LN+LSNA  +T  G  I +  T  ++  V+LRV DTG
Sbjct: 442 LSVDCEPMPAVVYADAEMWEKVVLNLLSNAFKYTLKG-HIGVQLTAEADG-VVLRVSDTG 499

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           VG+   EL    + F ++ N+     EG+G+GL L   +V  + G   + S   +G+   
Sbjct: 500 VGIPAAELPHMFERFHRVANAGGRTYEGSGIGLSLVHELVRLHGGTITVTSREGEGSTFT 559

Query: 806 IIFPLYDTSHPHDCI 820
           +  PL     P D +
Sbjct: 560 VRLPLGKDHLPQDQV 574



 Score =  231 bits (588), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 84/516 (16%), Positives = 178/516 (34%), Gaps = 62/516 (12%)

Query: 346  PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405
            P F + T     D I         L    +         +L R  +  + A   L  +  
Sbjct: 642  PYFTVSTAVNGADAIRQLATDLPQLILSDIMMPVMDGKELLRRVKQNPVTAPIPLIFLSA 701

Query: 406  NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465
                   +  +     +   +      +  +        +       +L S++E     +
Sbjct: 702  RAGQEARIDGLEAGADDYLVKPFSSLELLTKIRAQINLNQTRRQGETRLRSLVEQAPVAM 761

Query: 466  AII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
             ++     +I   N+A+ +L     +DIL KP    + +            +    +   
Sbjct: 762  LLMKGSNLVIDLVNQAMLELIQ-REKDILGKPLVDAMPELNGQGFIDRCLTVYQTGVPDQ 820

Query: 525  LEKITLGSTKEEK----LLSLRIIIKKLPFS-SCYSLTMHDISEW--------------- 564
               I +   +  +      ++ +       + +       +I+E                
Sbjct: 821  GWSIAIPVNRNNRVETGYFNILLTPYYEGNAITGVLEVCTEITELVEVNKALATSEDRYR 880

Query: 565  ----------KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                      +Q   +L  +    ++ + +   F    SH+++ PL  I  F +++KNQ 
Sbjct: 881  QLSTALDEQVQQRTAELQASIHDLQRSNDNLQQFAYVASHDLQEPLRKIQSFGDLLKNQY 940

Query: 615  FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
               LG    I+Y   +  + N +  ++ DLL  S+I + +     E VSL E +S  +  
Sbjct: 941  ADNLG--EGIDYLKRMQTAANRMSTLIRDLLSFSRITTRQEV--TETVSLAETLSMVVLD 996

Query: 675  VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF---TPSGGQI------ 725
            +++   E    +R    + +P +L D   + Q+  N+LSNA+ F   + +G  +      
Sbjct: 997  LEVMIQETGAEMRI---HPLPTVLGDRSQLIQLFQNLLSNALKFRRKSSAGVSVPPVVEV 1053

Query: 726  ------------IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
                         +  T +      + V D G+G     L++  + F ++    +   +G
Sbjct: 1054 SAQLVNVSELPSTVRPTRSVAAYYRIDVTDNGIGFNEKYLDRIFQVFQRLHG--KSEFQG 1111

Query: 774  TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            TG+GL + + +V  + G     S P +G    +  P
Sbjct: 1112 TGIGLAICEKVVANHGGVITAQSQPGEGATFSVYLP 1147


>gi|254457972|ref|ZP_05071399.1| PAS/PAC sensor hybrid histidine kinase [Campylobacterales bacterium
           GD 1]
 gi|207085365|gb|EDZ62650.1| PAS/PAC sensor hybrid histidine kinase [Campylobacterales bacterium
           GD 1]
          Length = 1040

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 79/262 (30%), Positives = 137/262 (52%), Gaps = 17/262 (6%)

Query: 560 DISEWKQEKNKLSHAKKIAEKE-------SSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
           +I++ KQ + +L    K  E+        +  KSDFL+ +SHEIRTP+ AI+GF+E + +
Sbjct: 533 EIAKRKQAQEELFEVNKKLEEAKDIAVNANKAKSDFLSNMSHEIRTPMNAILGFAE-LLD 591

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
           +R   + + +   +   I  SG  +L ++ND+L++SKIESGK+ L    V++     E I
Sbjct: 592 KR---VEDKKSKSFIKTIRSSGQTLLYLINDILNLSKIESGKLELVKSRVNIQNICEETI 648

Query: 673 SLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ---IIIS 728
           ++ +L A +K + ++      +P+ IL D   + +I +N++ NAI FT  G     + + 
Sbjct: 649 NIFKLQAKQKGLQLQLDINKEMPKAILIDSIRLSEILINLIGNAIKFTEEGYVKLVVNVD 708

Query: 729 TTHTSNEEV--ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
             +    +V   +RV D+G+G+     +K    F Q  N    +  GTGLGL +++ +  
Sbjct: 709 EVYEHTSKVDLTIRVEDSGIGIEKINQDKIFNIFEQTENQDVKKYGGTGLGLAISRKLSK 768

Query: 787 ANMGKFYIFSTPAKGTLIEIIF 808
              G   + S   KG+   I F
Sbjct: 769 LMGGSLEVESVLGKGSSFIIEF 790


>gi|37676889|ref|NP_937285.1| hypothetical protein VVA1229 [Vibrio vulnificus YJ016]
 gi|37201433|dbj|BAC97255.1| conserved hypothetical protein [Vibrio vulnificus YJ016]
          Length = 881

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 88/258 (34%), Positives = 135/258 (52%), Gaps = 15/258 (5%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I E +Q+  ++ HAK+ A   +  KS FLA +SHEIRTPL  IIG +E++          
Sbjct: 350 IDEKQQQMVEIIHAKESAISANRAKSVFLANMSHEIRTPLNGIIGMTEILSQSELSS--- 406

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
            +  E    ID S   +L ++ND+LD+SKIESG +N+  +   + E V +A++L Q  A 
Sbjct: 407 -QQKEILGDIDTSSQSLLILLNDILDLSKIESGNLNISLQEADIRETVYQAMTLFQSKAT 465

Query: 681 EKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIIST-------THT 732
            K I +  +   +IP +++AD   +KQ+  N++ NAI FT  G    IST        H 
Sbjct: 466 SKNIELHITMGEDIPAKVMADDHRIKQVLTNLVGNAIKFTKEG---YISTFVNYQADEHD 522

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
               +  +V DTG+G+   +LE   +PF Q  +S   +  GTGLGL + + +V    G+ 
Sbjct: 523 HQGYLTFKVTDTGIGIDQAKLETIFEPFTQEDDSITRQFGGTGLGLAICRQLVAMMGGEL 582

Query: 793 YIFSTPAKGTLIEIIFPL 810
              ST   G+      P+
Sbjct: 583 TATSTKGLGSCFSFTIPV 600


>gi|86137265|ref|ZP_01055843.1| putative sensory transduction histidine kinase of highly complex
           domain structure [Roseobacter sp. MED193]
 gi|85826589|gb|EAQ46786.1| putative sensory transduction histidine kinase of highly complex
           domain structure [Roseobacter sp. MED193]
          Length = 736

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 72/254 (28%), Positives = 125/254 (49%), Gaps = 10/254 (3%)

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
           + L  A +   K +  KS+FLA +SHEIRTP+  ++G  EV++     P          +
Sbjct: 200 DDLLRAHQKESKANRAKSEFLAAMSHEIRTPMNGVLGMVEVLEKTDLAP----EQRRILH 255

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I  S N +L I++D+LD+S+IE+GKM L   P+ L   +  A + ++ +AN+  + +  
Sbjct: 256 TIQESSNSLLWIIDDILDVSRIEAGKMELFETPMRLLPLIEGATATLRPHANQMGVQLSL 315

Query: 689 SFANNIPR-ILADLRSVKQIALNILSNAIHFTP-----SGGQIIISTTHTSNEEVILRVR 742
           S   ++P     D   ++QI LN++ NAI F+        GQ+ +         +   + 
Sbjct: 316 SVQADLPDTFRGDAGRMRQILLNLMGNAIKFSEPLPGEEPGQVKLRVEIREAGWIDFVIE 375

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G+G+     E    PF +  +  +   +G GLGL + + +V    G   + ST  +G+
Sbjct: 376 DNGIGIEPEVQETIFTPFERSASVAKRMIKGNGLGLTIVQQLVSKMGGAVKVDSTLGEGS 435

Query: 803 LIEIIFPLYDTSHP 816
           +  +  PL + S P
Sbjct: 436 VFTVRLPLVEPSGP 449


>gi|163795854|ref|ZP_02189818.1| Signal transduction histidine kinase [alpha proteobacterium BAL199]
 gi|159178887|gb|EDP63423.1| Signal transduction histidine kinase [alpha proteobacterium BAL199]
          Length = 476

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 102/344 (29%), Positives = 172/344 (50%), Gaps = 15/344 (4%)

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT---EILSLDLRQTLEKITLGSTKE 535
                + G   + ++ + +      +  S +   +    ++  L+         LG+   
Sbjct: 140 DRFESIHGPRSDVVVLESYVPAHSPSEDSKVIAVMEIYTDVTELEGNILGRLEVLGAM-- 197

Query: 536 EKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI----AEKESSHKSDFLAR 591
                L I I  +       L +        +++              + +  KS FLA 
Sbjct: 198 -----LVIAILLVAAFGVQLLVLRRAESRLHQEHMQRLKITADYAVEHEANRAKSAFLAN 252

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           +SHE+RTPL AIIGFSEV++ + FGP+G  RYIEYA  I+ +G  +L +++++LD+SKIE
Sbjct: 253 MSHELRTPLNAIIGFSEVLQTETFGPIGQKRYIEYATDINMAGYHLLHVIDEVLDLSKIE 312

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
           +GK++L+   +     ++ A+ ++   +    + I+ +    IP +  D   ++QI LN+
Sbjct: 313 AGKVDLNLSTIDPTGVIAAALDMLGPDSERHGVEIQRALTATIPVMETDEGKLRQIVLNL 372

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           +SN++ +T  GG + +ST   ++     + + DTGVGM+  EL  AM PFG+I ++    
Sbjct: 373 VSNSLKYTKPGGSVTVSTEVDTDLSATQITISDTGVGMSKDELALAMTPFGRIDSAMSYT 432

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
             GTGLGLPL K+ VD   G F I S P  GT + I  P+   S
Sbjct: 433 RGGTGLGLPLTKSFVDLLGGSFQIDSVPGVGTTVSIQLPIITAS 476


>gi|329114863|ref|ZP_08243619.1| Histidine protein kinase DivJ [Acetobacter pomorum DM001]
 gi|326695760|gb|EGE47445.1| Histidine protein kinase DivJ [Acetobacter pomorum DM001]
          Length = 946

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 84/275 (30%), Positives = 145/275 (52%), Gaps = 10/275 (3%)

Query: 544 IIKKLPFSSCYS--LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
             +     + +   L M +I   K+   +L  AK+ AE  +  KS F+  VSHEIRTPL 
Sbjct: 634 SYRAAEDENRFQTRLLMREIHAHKRTDQELKKAKERAESANLSKSRFMVGVSHEIRTPLN 693

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           +I+G++ +++N+   P    +  E    I RS   +  ++  L DISKIE+G+M +  E 
Sbjct: 694 SIMGYAYLLENKMLTP---EKQNEGLKVIQRSTEHLSGLIEGLFDISKIEAGRMEILREK 750

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTP 720
           ++  E +     +++   N+K++L      +++P  ++ D R ++QI +N+LSNAI FTP
Sbjct: 751 INFREFLKHLTEMLRFQVNQKKLLFIEHIPDDLPEYVMTDQRRLRQILINLLSNAIKFTP 810

Query: 721 SGGQIIISTTHTSNEEV-ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
           SG    +S +   N E+ I  ++DTG+G+   ++E+  +PF +  +      +GTGLGL 
Sbjct: 811 SGS---VSFSVRWNMEIAIFEIQDTGIGIPATDIERIHEPFQRSSHPASQSIQGTGLGLT 867

Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           + + +V    G+  I S    GT   +   L  T 
Sbjct: 868 ITRLLVQILGGELTIKSQVGLGTTCRVRLMLAQTE 902


>gi|159027054|emb|CAO89239.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 733

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 78/257 (30%), Positives = 125/257 (48%), Gaps = 7/257 (2%)

Query: 559 HDISEWKQEK--NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            DI E +  +   +L      AE  +  KS+FL  +SHE+ TPLT IIG S  ++     
Sbjct: 339 KDIFECRVIERTQELQDTLMAAEAANLCKSEFLNNMSHELLTPLTCIIGLSSTLQKCSAA 398

Query: 617 P--LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
              L   +   Y   I  +GN +L+++NDLL+ S++ +GK  L  +  SL    +  + +
Sbjct: 399 SNFLPPDKQKHYLQVIQDNGNKLLELINDLLNFSQVSAGKAVLDIKQFSLKYLCNHVLEI 458

Query: 675 VQLYANEKRILIRTS--FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
           ++  A  K I +              AD   V+QI L +L NA+ FTP  G I +     
Sbjct: 459 IKTEAEIKEINLILEMKITEKEHYFYADYDRVQQILLYLLKNALKFTPEQGAITLRL-WK 517

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
              +VI +V DTG+G+   ++    + F Q+  S++ R  G GLGL L K +V+ + G  
Sbjct: 518 EGSQVIFQVEDTGIGIPAQKIPLLFEKFTQLDGSRKRRYGGMGLGLALTKQLVELHRGTI 577

Query: 793 YIFSTPAKGTLIEIIFP 809
            + S   KG++  +  P
Sbjct: 578 EVESCLDKGSIFTVRLP 594


>gi|86357941|ref|YP_469833.1| two-component sensor histidine kinase/response regulator hybrid
           protein [Rhizobium etli CFN 42]
 gi|86282043|gb|ABC91106.1| probable two-component sensor histidine kinase/response regulator
           hybrid protein [Rhizobium etli CFN 42]
          Length = 867

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 105/664 (15%), Positives = 206/664 (31%), Gaps = 50/664 (7%)

Query: 175 FSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL 234
            S   GF  V   R  +             + + + K          Y   +       +
Sbjct: 69  VSSVIGFIEVMPQRQSDSLARAFLNSHPDGTLITDEKGRII-YANVAYGALTGARKATEV 127

Query: 235 RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294
           +    + S           L           E     +      N +     +    L  
Sbjct: 128 QTLETLLSRHRESNEALYRLVNGLREGKEGREEFRLLRAVGPGSNSSGAHWYRLKVRLLQ 187

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPET------VDKCPIPFF-VYSHGNLFYANPS 347
              +  + L       ++A  D+ E    E       +D  P  FF     G +FY N +
Sbjct: 188 PEDDGGKPLQIWQITDITAERDDQERFFKELQNAIDYLDHAPAGFFSAGRKGEIFYLNAT 247

Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
                       +  +  +  L     ++         +          +  L  ++   
Sbjct: 248 LAEWLGLDLTKFLPGSMSIRDL-----VAGEGLALIQSVQAEPGLKKTVTLDL-DLRKAN 301

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
             SL +  I    + +         I      +  + +      M+       T   IA 
Sbjct: 302 GQSLPVQIIHSVTSMRDGAPGESRTIVLAREKSSESGQSASAAAMRFTRFFNNTPMAIAS 361

Query: 468 INREGIILSTNRAVSKLFG--YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
           ++ +G IL TN    KLF      +D+ + P+   + Q +                    
Sbjct: 362 VDGDGRILRTNAPFLKLFSGIVSRDDLEKAPYLETIVQESDRPQLAAALTAAKDRQGDIP 421

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKE 581
              T   T E +     +                +   +++E K  + +++  +K+    
Sbjct: 422 PLDTRTPTDEARYFRFYVNAVIDQSDEAPEEAAIVYAVEVTEQKALEAQMAQTQKM---- 477

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
            +        ++H+    LTAI+  S+ +  Q      +  + +    I R+ N    +V
Sbjct: 478 -NAVGTLAGGIAHDFNNVLTAILLSSDHLLLQARP--SDASFADLME-IKRNANRAAVLV 533

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701
             LL  S+    K  +    ++L + V +   LV    +   + +   +  ++  +  DL
Sbjct: 534 RQLLAFSR----KQTMRPSVLNLTDVVGDLRMLVDRLLSGTNVKLDVQYGRDLWPVKTDL 589

Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTT--------------HTSNEEVILRVRDTGVG 747
              +Q+ +N+  NA    P GG + + T                 + + V++ V DTG G
Sbjct: 590 SQFEQVLINLCVNARDAMPDGGTLTLRTRNLTAADVATFNYSYMPAEDMVLVEVADTGTG 649

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           +    ++K  +PF    +     G+GTGLGL +   +V  + G     S   KGT   + 
Sbjct: 650 IAPEIMDKIFEPFFTTKD----VGKGTGLGLAMVYGIVKQSGGYIQPESEVGKGTTFRVF 705

Query: 808 FPLY 811
            P Y
Sbjct: 706 LPRY 709



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 50/488 (10%), Positives = 123/488 (25%), Gaps = 41/488 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAF------KMIGMRLCDVSDILHIDPNNHIGDLLKRQNT 142
            D  G +   +       G          + +  R  + ++ L+   N  + +  + +  
Sbjct: 102 TDEKGRIIYANVAYGALTGARKATEVQTLETLLSRHRESNEALYRLVNG-LREGKEGREE 160

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
           +     + P   ++      L    +   +      + + I  +    +D     K L  
Sbjct: 161 FRLLRAVGPGSNSSGAHWYRLKVRLLQPEDDGGKPLQIWQITDITAERDDQERFFKELQN 220

Query: 203 KFSHLHEIKKGHSSVEKEK---YDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK-TEK 258
              +L     G  S  ++    Y   +          K    S++       + L   + 
Sbjct: 221 AIDYLDHAPAGFFSAGRKGEIFYLNATLAEWLGLDLTKFLPGSMSIRDLVAGEGLALIQS 280

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE----YLSHRNHPSLSAY 314
                  + ++    D    N      +              E     L+          
Sbjct: 281 VQAEPGLKKTVTLDLDLRKANGQSLPVQIIHSVTSMRDGAPGESRTIVLAREKSSESGQS 340

Query: 315 FDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLT-KYKSVDDIEIAGGLSTLLDA 372
                       +  P+    V   G +   N  FL L     S DD+E A  L T++  
Sbjct: 341 ASAAAMRFTRFFNNTPMAIASVDGDGRILRTNAPFLKLFSGIVSRDDLEKAPYLETIVQE 400

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
                  A     L  +                +               +          
Sbjct: 401 SDRPQLAAA----LTAAKDRQGDIPPLDTRTPTDEARYFRFYVNAVIDQSDEAPEEAAIV 456

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
              E  + +  + +M  +  ++ ++    + GIA           N  ++ +     + +
Sbjct: 457 YAVEVTEQKALEAQM-AQTQKMNAV-GTLAGGIA--------HDFNNVLTAIL-LSSDHL 505

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
           L         + + +     +    + +    L +  L  ++++ +      +  L    
Sbjct: 506 L------LQARPSDASFADLMEIKRNANRAAVLVRQLLAFSRKQTMRP---SVLNLTDVV 556

Query: 553 CYSLTMHD 560
                + D
Sbjct: 557 GDLRMLVD 564


>gi|37679852|ref|NP_934461.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
 gi|37198597|dbj|BAC94432.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
          Length = 569

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 75/243 (30%), Positives = 134/243 (55%), Gaps = 7/243 (2%)

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
            +L+ A++ +E+ +  KS+FLA +SHE+RTPL +++G  +V+K           +I   +
Sbjct: 194 RELALAREESERANRAKSEFLAMMSHELRTPLNSVLGMLDVLKQSDMSAG----HINLLS 249

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
           +++ S  L+L I++D+LD+SKIESG+ +L  + +++++ V+  +S  QL A  K + I  
Sbjct: 250 HMESSAGLLLAIISDILDLSKIESGEFSLSPQWININDTVTFVVSQQQLVAATKGLNIEL 309

Query: 689 SFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747
           S   ++      D   + Q+  N++ NA+ FT  G QI I      N+E+ + V DTG+G
Sbjct: 310 SIELDDKRHYWLDPSRLSQVLFNLIGNAVKFTQQG-QIDIRVNLE-NDELSISVIDTGIG 367

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           +   ++      F Q  +S   +  GTGLGL + K +V+   G   + S   KG+   + 
Sbjct: 368 IEKDKISSLFTAFKQADSSITRKFGGTGLGLAITKHLVELMSGTVRVSSQFGKGSTFVVK 427

Query: 808 FPL 810
            P+
Sbjct: 428 IPV 430


>gi|300698352|ref|YP_003749013.1| two-component transcriptional regulator and sensor protein
           [Ralstonia solanacearum CFBP2957]
 gi|299075076|emb|CBJ54647.1| putative two-component transcription regulator and sensor protein
           [Ralstonia solanacearum CFBP2957]
          Length = 797

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 103/634 (16%), Positives = 215/634 (33%), Gaps = 48/634 (7%)

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           ++  G               +P      + +  +      H       +       +   
Sbjct: 35  DLLDGTRLHVSAAARQAWGVAPDTLCGSRERWLAHVHPGDHAALRAAWQGLA----QGRD 90

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS----HRNHPSLSAYFDEGENLTPE 324
              +  +  I+  ++  ++    L      +   +             A   E E     
Sbjct: 91  FALEYRWIGIDGTEHRVRECGYRLPAQDGAATHAVGVVEDMTQRLRTLAELTESEFQLQW 150

Query: 325 TVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
             +  P P   +     + +AN ++       +VD +        + D         +  
Sbjct: 151 LAESIPFPIVQLGPDHRIRFANHAYAQRFGLPAVDLLGR-----HVCDLMGHDAYQRVLA 205

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
            ++       +     L       +    +      +     + +    I  +  + +  
Sbjct: 206 HLMKGFAGQRVDFEMEL-EYPHTGQGRRFIHAAYTPQRGSDGKVVALVCIIEDITERKEA 264

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF-LE 502
           +R+      +  +++E   D IA ++     +  NRAV++ FG P  +++ +  +   L 
Sbjct: 265 ERERFRHQREFITLMENAPDIIARLDPALRCVYINRAVTEAFGVPSGELIGRTLSESGLP 324

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGS-TKEEKLLSLRIIIKKLPFSSC----YSLT 557
                 +             Q L      + T+  ++      +              L 
Sbjct: 325 ARVAQPLEAAARCAFDTGSEQALTLHLEAAATRPPRVAHYNARVIPEADHRGEMESALLI 384

Query: 558 MHDISEWKQEKNKLS-------HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
           ++D++E  + + +          A+  AE  +  +  FLA VSHE+R+PL  I  ++ V+
Sbjct: 385 IYDVTERTEAERERDALLLREQAARAQAEAAAHARDQFLAVVSHELRSPLNGIQSWAYVL 444

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
           +NQ     G          I       + ++ DLLD +++ SGK+ L  +P  L  A+  
Sbjct: 445 ENQLAD--GPELVQRALAGIRTGVAQQVRLIEDLLDATRVMSGKLRLTRQPFPLRTALER 502

Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
           A+  V+  A E+RI +  +++ +   I  D   ++QI  N+LSNAI FT  GG + ++  
Sbjct: 503 ALDSVRAQAAERRIALHEAWSLDAQEIDGDADRIQQIVWNLLSNAIKFTQEGGDVWLAAD 562

Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG--------EGTGLGLPLAK 782
            +  E   + VRD G G+    +     PF Q   S   R                   K
Sbjct: 563 MS-GEVARIVVRDNGRGIAPAFVPHLFDPFRQADGSYTRRTGGLGLGLAL--------VK 613

Query: 783 AMVDANMGKFYIFS-TPAKGTLIEIIFPLYDTSH 815
            + + + G  +  S    +G    +  PL++ + 
Sbjct: 614 RLTELHGGLVHACSDGEQRGATFAVYLPLHEGAE 647



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/405 (9%), Positives = 80/405 (19%), Gaps = 21/405 (5%)

Query: 59  QESVSNTN-YLDSENTFVFDPIPRTVRFTWNIDA-HGYLKEISEELPKTIGNYAFKMIG- 115
           +  VS T     + +              W  D   G    +S    +  G     + G 
Sbjct: 3   EPVVSQTGPERGATSAPRRSSGSEPFDVFWVDDLLDGTRLHVSAAARQAWGVAPDTLCGS 62

Query: 116 -MRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNRE 174
             R                   L +   +  +     I+GT   V      LP       
Sbjct: 63  RERWLAHVHPGDHAALRAAWQGLAQGRDFALEYRWIGIDGTEHRVRECGYRLPAQDGAAT 122

Query: 175 FSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL 234
                  G+V          A     + +   L E            + I          
Sbjct: 123 ----HAVGVVEDMTQRLRTLAELTESEFQLQWLAESIPFPIVQLGPDHRIRFANHAYAQR 178

Query: 235 RMKNKVSSLTEYY-----AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYF 289
                V  L  +            +          +      + ++      +      +
Sbjct: 179 FGLPAVDLLGRHVCDLMGHDAYQRVLAHLMKGFAGQRVDFEMELEYPHTGQGRRFIHAAY 238

Query: 290 GTLQNNSKESFEYLSHRNHPSLSAYFDEGE----NLTPETVDKCPIPFFVYS-HGNLFYA 344
              + +  +    +      +     +             ++  P             Y 
Sbjct: 239 TPQRGSDGKVVALVCIIEDITERKEAERERFRHQREFITLMENAPDIIARLDPALRCVYI 298

Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
           N +        S + I      S L   P                  +  A +  L    
Sbjct: 299 NRAVTEAFGVPSGELIGRTLSESGL---PARVAQPLEAAARCAFDTGSEQALTLHLEAAA 355

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449
                          +A+   E      I  +  +    +R+ + 
Sbjct: 356 TRPPRVAHYNARVIPEADHRGEMESALLIIYDVTERTEAERERDA 400



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/401 (8%), Positives = 88/401 (21%), Gaps = 18/401 (4%)

Query: 56  DQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIG 115
           D  Q   +     +SE    +            +     ++  +    +  G  A  ++G
Sbjct: 130 DMTQRLRTLAELTESEFQLQWLAESIPFPIV-QLGPDHRIRFANHAYAQRFGLPAVDLLG 188

Query: 116 MRLCDV-SDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNRE 174
             +CD+     +     H+      Q   +     +P  G      I  A  P    + +
Sbjct: 189 RHVCDLMGHDAYQRVLAHLMKGFAGQRVDFEMELEYPHTGQGRRF-IHAAYTPQRGSDGK 247

Query: 175 FSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP---- 230
                   I+       +      R  ++F  L E      +                  
Sbjct: 248 VVAL--VCIIEDITERKEAERERFRHQREFITLMENAPDIIARLDPALRCVYINRAVTEA 305

Query: 231 --PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288
              P   +  +  S +   A     L+        +                        
Sbjct: 306 FGVPSGELIGRTLSESGLPARVAQPLEAAARCAFDTGSEQALTLHLEAAATRPPRVAHYN 365

Query: 289 FGTL--QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANP 346
              +   ++  E    L      +     +   +                      +A  
Sbjct: 366 ARVIPEADHRGEMESALLIIYDVTERTEAERERDAL-----LLREQAARAQAEAAAHARD 420

Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
            FL +  ++    +      + +L+         ++  +                 +   
Sbjct: 421 QFLAVVSHELRSPLNGIQSWAYVLENQLADGPELVQRALAGIRTGVAQQVRLIEDLLDAT 480

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
           R  S  +         +       + +  +  + RI   + 
Sbjct: 481 RVMSGKLRLTRQPFPLRTALERALDSVRAQAAERRIALHEA 521



 Score = 54.6 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 25/257 (9%), Positives = 64/257 (24%), Gaps = 13/257 (5%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
            +D       I+  + +  G  + ++IG  L +      +             +T   + 
Sbjct: 288 RLDPALRCVYINRAVTEAFGVPSGELIGRTLSESGLPARVAQPLE-AAARCAFDTGSEQA 346

Query: 148 TLWPIEGTNLYVPIDLAA----LPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
               +E      P         +P      E        I++      +       L  +
Sbjct: 347 LTLHLEAAATRPPRVAHYNARVIPEADHRGEME--SALLIIYDVTERTEAERERDALLLR 404

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
                   +  +    +   + S +   P   +++    L    A   ++++     + T
Sbjct: 405 EQAARAQAEAAAHARDQFLAVVSHELRSPLNGIQSWAYVLENQLADGPELVQRALAGIRT 464

Query: 264 SEESSLPEQEDFHTI------NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
                +   ED           L    +     T    + +S    +     +L   +  
Sbjct: 465 GVAQQVRLIEDLLDATRVMSGKLRLTRQPFPLRTALERALDSVRAQAAERRIALHEAWSL 524

Query: 318 GENLTPETVDKCPIPFF 334
                    D+     +
Sbjct: 525 DAQEIDGDADRIQQIVW 541


>gi|194014530|ref|ZP_03053147.1| sporulation kinase C [Bacillus pumilus ATCC 7061]
 gi|194013556|gb|EDW23121.1| sporulation kinase C [Bacillus pumilus ATCC 7061]
          Length = 436

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 96/411 (23%), Positives = 184/411 (44%), Gaps = 26/411 (6%)

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470
           L + F        +  +   + +     D    +++ +    +L  I +   + +   N 
Sbjct: 37  LDLAFTVLVLTGIWVVSGYVDRLNLFVSDLNTREKEAQELTERLNRITDNLQEIVFETNE 96

Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530
           +G I+  N+A +++ GY +++ L   +  + +Q    V+ H L+ I        +E   L
Sbjct: 97  KGEIIFLNQAWTQMTGYDIDECLGTMYNQYFDQE-ERVVQHLLSVIKEHKDAGRVELQLL 155

Query: 531 GSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK--- 585
               ++    +   +             T+ DI++ KQ K +L  + +   +  + K   
Sbjct: 156 HKEGKKVWGDVHYKLYFDEHHQFTGGIGTVADITKQKQAKLELERSNQQL-QMQAQKLAV 214

Query: 586 -SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
                A ++HE+R PLT++ GF +++K Q       P   +Y + I      +  ++++L
Sbjct: 215 AGQIAAGIAHEVRNPLTSVNGFLQLMKTQY------PERTDYFDIIFSEIKRIDFVLSEL 268

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILADLRS 703
           L ++K ++    +HF+ V L E + + I+L++  A    I ++  F   +   ILAD   
Sbjct: 269 LVLAKPQA----VHFQEVQLHELLEQVITLLKTNAVLSNIDLKQPFKRQDAGAILADANQ 324

Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
           +KQ+ +N++ NAI   P GG I IST    N E  + ++D G GM+  +++K   PF   
Sbjct: 325 MKQLFINLIKNAIEAMPEGGSIYISTEKVLN-EWKITIQDEGKGMSEEDIQKIYDPFFST 383

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
                   EGTGLGL +   ++  + G+  + S   KGT   I  P+   S
Sbjct: 384 KK------EGTGLGLTICATILKDHHGRMDVSSELGKGTAFHIYLPVCQKS 428



 Score = 54.6 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/147 (10%), Positives = 35/147 (23%), Gaps = 9/147 (6%)

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
           +      E         D      F     G + + N ++  +T Y   + +        
Sbjct: 68  TREKEAQELTERLNRITDNLQEIVFETNEKGEIIFLNQAWTQMTGYDIDECLGTMY---- 123

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
                       +   +L        A    L  +    +  +          ++  +  
Sbjct: 124 ---NQYFDQEERVVQHLLSVIKEHKDAGRVELQLLHKEGKK-VWGDVHYKLYFDEHHQFT 179

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLC 455
              G   +    +  K ++E    QL 
Sbjct: 180 GGIGTVADITKQKQAKLELERSNQQLQ 206



 Score = 50.8 bits (120), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 16/128 (12%), Positives = 41/128 (32%), Gaps = 12/128 (9%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL----KRQN 141
            +  +  G +  +++   +  G    + +G                 +  LL    + ++
Sbjct: 91  VFETNEKGEIIFLNQAWTQMTGYDIDECLGTMYNQ----YFDQEERVVQHLLSVIKEHKD 146

Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
               +  L   EG    V  D+     +  + +F+G  G G V         +   +R +
Sbjct: 147 AGRVELQLLHKEG--KKVWGDVHYKLYFDEHHQFTG--GIGTVADITKQKQAKLELERSN 202

Query: 202 KKFSHLHE 209
           ++     +
Sbjct: 203 QQLQMQAQ 210


>gi|222053593|ref|YP_002535955.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           FRC-32]
 gi|221562882|gb|ACM18854.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           FRC-32]
          Length = 350

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 75/355 (21%), Positives = 157/355 (44%), Gaps = 27/355 (7%)

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
            SI+ + S GI  ++ +G I   N     +      D+  K   +        +      
Sbjct: 19  ESIIASQSTGIIYLDGDGRIALINARAESMLHTSAGDVTGKRVDML------PLRTPVYR 72

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA 574
            +        +E    G+    +   +RI       SS     + D++E K+EK      
Sbjct: 73  VLSENCREMPVEVSVNGAVLTARSAEVRI---PSGESSGEIYELLDVTEEKKEK------ 123

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
                    H+ + +A ++H++++PLT ++G+ + ++N+  G   +   +   + +DRS 
Sbjct: 124 --------RHREEIVAMMTHDLKSPLTVLMGYVQALRNED-GTKVHVSLLPCLDEMDRSA 174

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
             +L ++ D+LD  ++E G +        L   +      +   A+ + + +  +  + I
Sbjct: 175 LKLLAMIEDVLDAYRLEVGLLQTTCSWCDLSAILEACCHDMAREASSRGVRLNHNIESGI 234

Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELE 754
           P +  D   + ++  NI+ NA+ FTP  GQ+ ++     +E++ + V DTG+G+   +L 
Sbjct: 235 PAMNVDGNQLSRVFANIIGNAVKFTPRKGQVTVNAWL-GDEKLHVAVTDTGIGIPQKDLP 293

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +    + +   +      GTGLGL ++KA+V+A+ G   + S   +G+   I+ P
Sbjct: 294 RIFNKYFRSKGANG--FRGTGLGLTISKAIVEAHGGAIAVESAVGEGSCFTIVIP 346


>gi|262395153|ref|YP_003287007.1| phosphate regulon sensor protein phoR [Vibrio sp. Ex25]
 gi|262338747|gb|ACY52542.1| phosphate regulon sensor protein phoR [Vibrio sp. Ex25]
          Length = 402

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 71/364 (19%), Positives = 147/364 (40%), Gaps = 29/364 (7%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           ++   + +  +  E+  D + +   EG I+  N+    L G+   +   +P +  +    
Sbjct: 62  ELTNLIRRFRNGAESLPDAVVVFRAEGNIVWCNKLAQHLLGFHWPEDSGQPISNLIRTPD 121

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
                +       L++R  L    +          L + I        + + + D+S+ K
Sbjct: 122 FIKYLNKKDFSEPLEMRSPLNVERM----------LELRIVPYTEGE-HLMVVRDVSQLK 170

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           Q +                + +F A VSHE+RTP+T + G+ E+   +    +  P + +
Sbjct: 171 QLEG--------------MRRNFFANVSHELRTPMTVLQGYLEM--TEDPDMVVGPMWSK 214

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
               +    N +  +VN LL +SKIE+  M+   + V++   +          + + +  
Sbjct: 215 AHGVMTEQLNRMNSLVNQLLTLSKIEAAPMHELEDVVNVPAMLEVLEKEAVSLSGDNQHK 274

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           ++     ++ R+L D   ++    N++ NA+ +TP G  I +    TS     L V D+G
Sbjct: 275 LKFDVDASL-RVLGDDDQLRSAISNLVYNAVKYTPPGANINVRWFQTSQG-ACLEVEDSG 332

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
            G+    L +  + F ++  ++     G+GLGL + K  +  +     I S    G+   
Sbjct: 333 DGIEPQHLHRLTERFYRVDKARSRDTGGSGLGLAIVKHALSHHDAHLEIHSEVGVGSKFS 392

Query: 806 IIFP 809
            + P
Sbjct: 393 FVLP 396


>gi|237712910|ref|ZP_04543391.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262409649|ref|ZP_06086189.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_22]
 gi|294647129|ref|ZP_06724733.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|294807884|ref|ZP_06766665.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
 gi|229447029|gb|EEO52820.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262352502|gb|EEZ01602.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_22]
 gi|292637546|gb|EFF55960.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|294444882|gb|EFG13568.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
          Length = 583

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 86/381 (22%), Positives = 164/381 (43%), Gaps = 25/381 (6%)

Query: 439 DTRINKRKMEIEVMQL-------CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
           +   +K+++     ++         +L   + G+A I  + I+   N ++          
Sbjct: 66  EAVRSKKELLESEQRMIQLIRQNELVLNNINSGLAYIANDYIVQWENISLCSKSLSYEAY 125

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLP 549
              +   +     T    N  +         +++    L +   + ++ +       +  
Sbjct: 126 KKGELCYLTAHNRTTPCENCVMQRARRSGQVESI----LFNLDNKHVIEVFATPIFNEQG 181

Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                 + + D++E +    +L  A+  AE+    KS FLA +SHEIRTPL AI+GFS++
Sbjct: 182 DVDGVVIRVDDVTERQHMIGELEKARSRAEQSDKLKSAFLANMSHEIRTPLNAIVGFSDL 241

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           +              E+   I+ +  L+L ++ND+LD+SKIE+G + L +E   L    +
Sbjct: 242 LM----VTEDQEEKEEFIQIINANNELLLKLINDILDLSKIEAGSVELKYEDFDLAVYFN 297

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
           E  + +       ++ +          +  D   + QI  N ++NAI +T  G    I  
Sbjct: 298 ELAASMHRRVVNPQVRLVPVNPYETCTVRLDKNRLAQILTNFVTNAIKYTSKG---TIEM 354

Query: 730 THTS-NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
            +   + ++ L VRDTG+G+   + +K    F ++        +GTGLGL + KA+V+A 
Sbjct: 355 GYEKIDGDIRLYVRDTGIGIPEDKKDKVFHRFEKLD----EFAQGTGLGLSICKAIVEAC 410

Query: 789 MGKFYIFSTPAKGTLIEIIFP 809
            G+    S   KG+L   + P
Sbjct: 411 RGEIGFESEFDKGSLFWAVLP 431


>gi|172035136|ref|YP_001801637.1| two-component sensor histidine kinase [Cyanothece sp. ATCC 51142]
 gi|171696590|gb|ACB49571.1| two-component sensor histidine kinase [Cyanothece sp. ATCC 51142]
          Length = 835

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 88/411 (21%), Positives = 170/411 (41%), Gaps = 48/411 (11%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG-------YPVEDILRKP 496
           ++++      +  +LE     + +   +G I+  NR   +  G            +  + 
Sbjct: 154 QQELASAKNLIKELLEELPLPVMLQTHQGEIIQQNRTWREQIGELLPPDNATACPLPHET 213

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR-------------- 542
                 +   S  N  L   ++       ++     T +     L               
Sbjct: 214 MNRLENKKMSSEHNDDLNHKMASITDMACDQWLNPPT-DNWDFPLSSLPNDSPESFVDED 272

Query: 543 ---IIIKKLPFSSCY------------------SLTMHDISEWKQEKNKLSHAKKIAEKE 581
              I    +P                            D+++ +Q   +L+       + 
Sbjct: 273 SLDIQPSPIPDQDKVWQFIKCPLTTDKLPIPISIFVATDVTQQQQLCQELAAKNADLVQL 332

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
           +  K +FLA +SHE+++PLTA++G S +++ ++ G L NPR + YA  I RSG  ++ +V
Sbjct: 333 NRLKDEFLACISHELKSPLTAVVGLSSLLQEEKIGDL-NPRQVHYAQLIYRSGRQLMTLV 391

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR---ILIRTSFANNIPRIL 698
           NDLLD++++E+G++ L F PV++ E    A   +      K    +         + ++L
Sbjct: 392 NDLLDLTRLETGQLKLSFSPVNIQEICHRAYHSIAEKYKGKSDKPLDFSLDIEVGLHQLL 451

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
           AD   + Q+ +++L NA+ FT +GG+  +  +   +  +   V DTG+G+         +
Sbjct: 452 ADELRLHQMLVHLLDNAMKFTQTGGKFGLKVSRWED-WLAFTVWDTGIGIPEESQHLIFQ 510

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            F Q+ N    + EGTGLGL L + +  A+ G     S   +G+   ++ P
Sbjct: 511 KFQQLENPLTRQFEGTGLGLVLTQRLARAHGGDISFVSKAGQGSQFTLLLP 561


>gi|300869219|ref|ZP_07113813.1| two-component sensor histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300332764|emb|CBN59011.1| two-component sensor histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 607

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 75/260 (28%), Positives = 128/260 (49%), Gaps = 16/260 (6%)

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
              +L  A+  A   S  KS FLA  SHE+RTPL  ++GF +++ +            ++
Sbjct: 333 LYQELEQARAEAVALSQLKSQFLANTSHELRTPLNGMLGFLKLVMDGMAD--DPEEEHQF 390

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
                RS   +L+++ND+LDI+KIE+GKM L   P+ ++E + E  +  Q    +K++  
Sbjct: 391 IQEAYRSALHLLNLINDVLDIAKIEAGKMELELTPIKINELLQEVENFTQAQLQQKQLNF 450

Query: 687 RTSFAN--NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT----------HTSN 734
           +       +   +  + + + Q+ LN++ NAI FT  GG I IS                
Sbjct: 451 KIQKPATQDEIIVYGNYQRLLQVMLNLVGNAIKFTHEGG-ISISMELIKKKIVIQNRELP 509

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
             V +RV DTG+G++  + +K  + F Q+   +  +  GTGLGL +++ +V+A  G    
Sbjct: 510 GLVKIRVADTGIGVSLDKQDKLFQSFFQVDGDRTRQYGGTGLGLAISQKLVEAMRGTVNF 569

Query: 795 FS-TPAKGTLIEIIFPLYDT 813
           +S     G+ +    PLY  
Sbjct: 570 YSMGEGLGSTVTFTIPLYQE 589


>gi|163731861|ref|ZP_02139308.1| phosphate regulon sensor protein, putative [Roseobacter litoralis
           Och 149]
 gi|161395315|gb|EDQ19637.1| phosphate regulon sensor protein, putative [Roseobacter litoralis
           Och 149]
          Length = 347

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 75/360 (20%), Positives = 152/360 (42%), Gaps = 31/360 (8%)

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           +L A    +  I+    I++ N+  + L G   + +  + +   L       +   +  +
Sbjct: 8   VLAALPMPVLAIDGSERIVAANKEATALVG---QGLAGRHYVTILR---QPQLIETIAAV 61

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKK 576
           L     +  + ++    ++      R+  + LP      L   D+S  +Q          
Sbjct: 62  LQDSQPRVSQYLSNDGIEDTTY---RVTARVLPNLRVVVLAFQDVSHLEQ---------- 108

Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
                   + DF+A VSHE+RTPLTA++GF E ++              + + +      
Sbjct: 109 ----AGQMRRDFVANVSHELRTPLTALMGFIETLRG--PAREDAAARDRFLDIMQGEAGR 162

Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696
           +  +V DLL +S++E  +     + V+L + VS     +   A +  +++     ++   
Sbjct: 163 MNRLVGDLLSLSRVEGDQRVRPRKSVNLSDVVSSVARTLAPLAKDTSVVLDCDLPDHPVG 222

Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE------EVILRVRDTGVGMTN 750
           ++ D   + Q+  N++ NAI +  SGG++II  T  + +       V + V D G G+  
Sbjct: 223 LIGDADQLMQVVTNLVENAIKYGASGGRVIIKLTEVARDLSLRAPGVYISVTDFGPGIDP 282

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             L +  + F +  + +     GTGLGL + K +++ + G+  I S   +G    ++ PL
Sbjct: 283 VHLPRLTERFYRADSHRSRALGGTGLGLAIVKHIINRHRGRLRIESELGQGATFTVVLPL 342


>gi|114765347|ref|ZP_01444464.1| phosphate regulon sensor histidine kinase, putative [Pelagibaca
           bermudensis HTCC2601]
 gi|114542327|gb|EAU45356.1| phosphate regulon sensor histidine kinase, putative [Roseovarius
           sp. HTCC2601]
          Length = 346

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 74/361 (20%), Positives = 145/361 (40%), Gaps = 29/361 (8%)

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
             ++ A      +I  +  + + N     L G   E +  + F   L       +   + 
Sbjct: 6   RHVVAAVPLPAILIRWDERVEAANAEAKALLG---EGLEGRHFITALR---QPSLLDAIE 59

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA 574
                   + L +      +++    + +    L       LT  DI+  +Q        
Sbjct: 60  GTFRDAAPR-LTRYLASDGRQDTTYEVSVRPLPLEGKPGVLLTFTDITHLEQ-------- 110

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
                     + DF+A VSHE+RTPLTA++GF E ++              +   ++   
Sbjct: 111 ------AGQMRRDFVANVSHELRTPLTALLGFIETLRG--PAREDAAARDRFLGIMEDEA 162

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
             +  +V DLL +S++E+ +     EPV L   V  AI  +   A +  + + T     +
Sbjct: 163 GRMERLVGDLLSLSRVEAEERVRPTEPVDLAGLVRSAIRGLAPLAEDAGVTLETDAPEAV 222

Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT------HTSNEEVILRVRDTGVGM 748
             +  D   ++Q+ +N++ N + ++  G ++ +             + V L V DTG G+
Sbjct: 223 LEVPGDADQLRQVVVNLIENGVKYSGRGAEVRVHLAEPAYQPRLRGQGVELAVTDTGPGI 282

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
               + +  + F ++ + +     GTGLGL + K +++ + G+  I S P KGT   ++ 
Sbjct: 283 NPIHIPRLTERFYRVDSHRAREMGGTGLGLAIVKHIINRHRGRLKIESAPGKGTTFRVLL 342

Query: 809 P 809
           P
Sbjct: 343 P 343


>gi|306843910|ref|ZP_07476505.1| PAS domain-containing protein [Brucella sp. BO1]
 gi|306275665|gb|EFM57389.1| PAS domain-containing protein [Brucella sp. BO1]
          Length = 857

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 98/622 (15%), Positives = 201/622 (32%), Gaps = 43/622 (6%)

Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271
           +G      + Y   +  +    +R  ++V +     +     L       L+++E     
Sbjct: 104 RGQIVYANQAYARMTGATDADGIRPLDQVLASEPAASDAIYRLTNAVRDGLSAQEEVRIS 163

Query: 272 QEDFHTINLNQY--TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE-----NLTPE 324
                  N +      +     L+  ++     ++ +         ++            
Sbjct: 164 GGLSRGANGSLAPVWYRIKARALEGGAEFKGPLVAWQVADISEERAEQERFFQELQEAIN 223

Query: 325 TVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
            +D  P  FF     G + Y N +               +  L+ ++    ++       
Sbjct: 224 HLDHAPAGFFSANPAGRIIYLNATLAEWLGVDLTQFTPGSLTLNDIVAGSGMA------L 277

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
           +   +++      +     +      SLA+ F    +  +         I  +  +   +
Sbjct: 278 IKAVKAEPGTSRNTVIDLDLIKRNGQSLAVRFYHRVQTARDGMPGTTRTIVLDRAEGDDS 337

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG--YPVEDILRKPFTVFL 501
                   ++      +    IA ++ EG  L TN     +F      + I R+     +
Sbjct: 338 SVAQRSAEVRFTRFFNSAPMAIAAVDAEGHTLRTNARFLDIFSGVVDRDAIDRRVKLENV 397

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDI 561
                    +                 T+    EE+ +   +                 I
Sbjct: 398 VHERDRETFNKALAAAFAGQASISPVDTVLPGNEERHIRFYMSPVTDLGGEAAEEAAI-I 456

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           S  +  + K    +    ++          ++H+    LTAII  S+++         +P
Sbjct: 457 SAVETTEQKALENQMAQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNHRA--SDP 514

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
            + +  N I ++ N    +V  LL  S+    +  L  E + L + +++ + ++      
Sbjct: 515 SFPDIMN-IKQNANRAASLVRQLLAFSR----RQTLRPEVLDLTDVLAD-LRMLLARLVG 568

Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT----------- 730
           K I ++     ++  + ADL   +Q+A+N+  NA    P GGQI + T            
Sbjct: 569 KDIELKIDHGRDLWPVKADLGQFEQVAVNLAVNARDAMPEGGQITLRTRNIPAADAAKLH 628

Query: 731 ---HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
                  + V+  V DTG G+    LEK  +PF          G+GTGLGL +   ++  
Sbjct: 629 YRDLPEADYVVFEVEDTGTGIPADVLEKIFEPFFTTK----EVGKGTGLGLSMVYGIIKQ 684

Query: 788 NMGKFYIFSTPAKGTLIEIIFP 809
             G  Y  S   KGT  +I  P
Sbjct: 685 TGGFIYCDSEVGKGTTFKIFLP 706



 Score = 70.4 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/238 (11%), Positives = 66/238 (27%), Gaps = 7/238 (2%)

Query: 319 ENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
           ++L    +D  P    +    G + YAN ++  +T     D I     +  L   P  SD
Sbjct: 84  QDLAHSFMDTQPEGTVISDPRGQIVYANQAYARMTGATDADGIRPLDQV--LASEPAASD 141

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
                   +                 +    +   + +    +A +         +  + 
Sbjct: 142 AIYRLTNAVRDGLSAQEEVRISGGLSRGANGSLAPVWYRIKARALEGGAEFKGPLVAWQV 201

Query: 438 VDTRINKRKMEIEVMQLC-SI--LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
            D    + + E    +L  +I  L+    G    N  G I+  N  +++  G  +     
Sbjct: 202 ADISEERAEQERFFQELQEAINHLDHAPAGFFSANPAGRIIYLNATLAEWLGVDLTQFTP 261

Query: 495 KPFT-VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
              T   +   +   +   +           ++   +    +   +     ++     
Sbjct: 262 GSLTLNDIVAGSGMALIKAVKAEPGTSRNTVIDLDLIKRNGQSLAVRFYHRVQTARDG 319



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 47/420 (11%), Positives = 103/420 (24%), Gaps = 38/420 (9%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD--ILHIDPNNHIGDLLKRQNTWYGKT 147
           D  G +   ++   +  G      I   L  V        D    + + ++   +   + 
Sbjct: 102 DPRGQIVYANQAYARMTGATDADGI-RPLDQVLASEPAASDAIYRLTNAVRDGLSAQEEV 160

Query: 148 TL-----WPIEGTNLYVPIDLAALPIYSRNREFSG-FRGFGIVHVNRVDNDPRALGKRLD 201
            +         G+   V   + A  +     EF G    + +  ++    +     + L 
Sbjct: 161 RISGGLSRGANGSLAPVWYRIKARALEGGA-EFKGPLVAWQVADISEERAEQERFFQELQ 219

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR------MKNKVSSLTEYYAHKDDVLK 255
           +  +HL     G  S       I+   +    L           ++           ++K
Sbjct: 220 EAINHLDHAPAGFFSANPAGRIIYLNATLAEWLGVDLTQFTPGSLTLNDIVAGSGMALIK 279

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN--NSKESFEYLSHRNHPSLSA 313
             K    TS  + +                     T ++          L        S 
Sbjct: 280 AVKAEPGTSRNTVIDLDLIKRNGQSLAVRFYHRVQTARDGMPGTTRTIVLDRAEGDDSSV 339

Query: 314 YFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLT-KYKSVDDIEIAGGLSTLLD 371
                E       +  P+    V + G+    N  FL +       D I+    L  +  
Sbjct: 340 AQRSAEVRFTRFFNSAPMAIAAVDAEGHTLRTNARFLDIFSGVVDRDAIDRRVKLENV-V 398

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
             +  +         +    +       L     N E  +     P              
Sbjct: 399 HERDRETFNKALAAAFAGQASISPVDTVL---PGNEERHIRFYMSPVTDLGGEAAEEAAI 455

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSI----------LEATSDGIAIINREGIILSTNRAV 481
               E  + +  + +M  +  ++ ++                 I + +    +L TN   
Sbjct: 456 ISAVETTEQKALENQM-AQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSD---LLLTNHRA 511



 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 45/134 (33%), Gaps = 12/134 (8%)

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY-LT 514
           S ++   +G  I +  G I+  N+A +++ G    D   +P    L     +    Y LT
Sbjct: 89  SFMDTQPEGTVISDPRGQIVYANQAYARMTGATDAD-GIRPLDQVLASEPAASDAIYRLT 147

Query: 515 EILSLDLRQTLEKITLG---STKEEKLLSLRIIIKKLPFSSC-------YSLTMHDISEW 564
             +   L    E    G         L  +   IK               +  + DISE 
Sbjct: 148 NAVRDGLSAQEEVRISGGLSRGANGSLAPVWYRIKARALEGGAEFKGPLVAWQVADISEE 207

Query: 565 KQEKNKLSHAKKIA 578
           + E+ +     + A
Sbjct: 208 RAEQERFFQELQEA 221


>gi|258404905|ref|YP_003197647.1| PAS/PAC sensor hybrid histidine kinase [Desulfohalobium retbaense
           DSM 5692]
 gi|257797132|gb|ACV68069.1| PAS/PAC sensor hybrid histidine kinase [Desulfohalobium retbaense
           DSM 5692]
          Length = 1019

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 98/567 (17%), Positives = 180/567 (31%), Gaps = 44/567 (7%)

Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330
           E + F+ +N   +        L + +      ++     S+     +  +     +D  P
Sbjct: 342 EPDLFYELNQQVFWTIIISLILLSITLVLL-VINIIQRKSVEQKIKDQLSFLQLLMDTIP 400

Query: 331 IPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389
           IP  F    G     N SF               G     L    L          +  S
Sbjct: 401 IPIYFKNKDGTYENCNTSFEKWFSISRSQI---TGKSDDDLQGKGLVQLYQEVDDSILES 457

Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449
                       +I  +      +        N   E     G+  +  D +  +  +  
Sbjct: 458 AG----VRTYEDSILSSNGEIHDVILHKATYKNAKGEIAGFVGVLFDITDRKKAEDNLRK 513

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
              +  SI E +  GI  I   G +L  N A++++ GY     L      F         
Sbjct: 514 AEEKYRSIFENSPLGIFRITPRGKLLDCNPALARMMGYETPSALMFETDEFPRALFADER 573

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS----LTMHDISEWK 565
                  +       ++       ++ + L+L I ++ +  S            D+++  
Sbjct: 574 QEREVRKMLQRGSGIVQFERQFRRRDGQNLTLNINVRIIRHSLGTIKHFEGFAEDVTQKV 633

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
             + +L  ++K+              ++H+    LT+II   E + +    P  +     
Sbjct: 634 NLERQLLQSQKM-----EAIGTLAGGIAHDFNNILTSIINSIE-LASMDVDP--DSMAGN 685

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
                 ++      +V  +L  S+         F   +L   + E +SL++       I 
Sbjct: 686 DLERALKAAQRGSHLVKQILTFSRPSQDG----FISTNLAHVLQEDLSLIKASLPR-NIE 740

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHF-TPSGGQIIISTT-------------H 731
           IR +         AD   + QI +N+ +NA       GG + +S +              
Sbjct: 741 IRENIQARHETTTADPTQIHQIVMNLCTNAFQALREHGGVLEVSLSEVALDQKEAKALHI 800

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
            S   + L V D G G+    L K   PF         +GEGTGLGL +   +   + G 
Sbjct: 801 ASGNYLCLAVSDNGPGIDTDILNKIFDPFFTTKG----KGEGTGLGLAVVHGIAKNHNGA 856

Query: 792 FYIFSTPAKGTLIEIIFPLYDTSHPHD 818
             + S P + T  EI+ P+ +     D
Sbjct: 857 VRVSSLPWEKTSFEILLPMQEHDDELD 883



 Score = 42.7 bits (99), Expect = 0.28,   Method: Composition-based stats.
 Identities = 18/175 (10%), Positives = 42/175 (24%), Gaps = 7/175 (4%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID--PNNHIGDLLKRQ-NT 142
            + I   G L + +  L + +G      +     +    L  D      +  +L+R    
Sbjct: 529 IFRITPRGKLLDCNPALARMMGYETPSALMFETDEFPRALFADERQEREVRKMLQRGSGI 588

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
              +      +G    + +++    I         F GF          +      +  K
Sbjct: 589 VQFERQFRRRDG--QNLTLNINVRIIRHSLGTIKHFEGFA--EDVTQKVNLERQLLQSQK 644

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257
             +                  I +           + ++      A K     + 
Sbjct: 645 MEAIGTLAGGIAHDFNNILTSIINSIELASMDVDPDSMAGNDLERALKAAQRGSH 699


>gi|160883653|ref|ZP_02064656.1| hypothetical protein BACOVA_01625 [Bacteroides ovatus ATCC 8483]
 gi|156111066|gb|EDO12811.1| hypothetical protein BACOVA_01625 [Bacteroides ovatus ATCC 8483]
          Length = 391

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 95/388 (24%), Positives = 158/388 (40%), Gaps = 31/388 (7%)

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN-------------RAVSKLFGYP 488
              RK+E       +IL+     I +I+ +  +L TN             + V  L    
Sbjct: 7   RESRKLERTSHIAGAILKNVHAFILLIDNDFKVLKTNYYQKTGTRKGTEEKRVGDLLQCR 66

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS----LRII 544
                           +  +                LE      T +   +     +   
Sbjct: 67  NALAAEGGCGTHSFCGSCPIRTAIRQAFEQRRNFTDLEATLSVVTSDNTTVECDAVISGS 126

Query: 545 IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
              L       +T+HD++  KQ + +L  AK+ AEK    KS FLA +SHEIRTPL AI 
Sbjct: 127 YFLLNEEENMVITVHDVTRRKQAEKELRLAKEKAEKADISKSAFLANMSHEIRTPLNAIT 186

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           GF+EV+              +Y   I  + +L++ +VND+LD+SKIE+G +      V +
Sbjct: 187 GFAEVL----GSATTEEEKAQYQEIIKMNADLLMQLVNDILDMSKIEAGTLEFVQTTVDV 242

Query: 665 DEAVSEAISLVQLYANEKR--ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
           ++ +S+   L Q+  ++    I I    + +   I  D   V Q+  N   NAI FT  G
Sbjct: 243 NQLLSDLQQLFQMRVDDAGGNIQIIAESSRSSCMIQTDRNRVAQVLSNFAGNAIKFTHKG 302

Query: 723 GQIIISTTHTSNE-EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
               I   + + + E+   V+DTG G+   +L    + F ++   +    +G GLGL ++
Sbjct: 303 S---IRLGYEARDTELYFYVKDTGTGIPAEKLPDVFERFVKLNKDK----KGAGLGLSIS 355

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           + +V    G+    S   +G+      P
Sbjct: 356 QTIVAKLGGQIGANSVEGEGSTFWFTIP 383


>gi|301168053|emb|CBW27639.1| putative histidine kinase/response regulator fusion protein
           [Bacteriovorax marinus SJ]
          Length = 593

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 73/242 (30%), Positives = 121/242 (50%), Gaps = 8/242 (3%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           KL  AK  AE  ++ KS+FLA +SHEIRTPL  IIGF+ ++ + +       +      Y
Sbjct: 205 KLVEAKIKAESVANLKSNFLANMSHEIRTPLNGIIGFTGILSDLKLSTEAKEQVR----Y 260

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I   G  +  I+ND+LD SKI +GK+++     ++   V   I +       + I ++  
Sbjct: 261 IKECGESLAAIINDILDFSKISAGKLSIVKSNFNIRNCVLSTIHIFDHITTSRGIDLKID 320

Query: 690 FANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEE--VILRVRDTG 745
             ++IP IL  D   +KQ+  N++ NA+ FT  G  ++ +     S+    +  +V+DTG
Sbjct: 321 IESDIPDILSGDSLRLKQVLTNLIGNAVKFTEKGSIEVKVKVVQKSDSYFKLQFKVKDTG 380

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+      +    F Q   S   +  GTGLGL ++K +V+A  G+  + S    G+   
Sbjct: 381 IGIRQEAQARLFYSFEQADVSTSRKYGGTGLGLSISKKLVEAMGGEISVSSEEGVGSEFS 440

Query: 806 II 807
             
Sbjct: 441 FT 442


>gi|162454319|ref|YP_001616686.1| two-component sensor histidine kinase [Sorangium cellulosum 'So ce
           56']
 gi|161164901|emb|CAN96206.1| two-component sensor histidine kinase [Sorangium cellulosum 'So ce
           56']
          Length = 850

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 105/690 (15%), Positives = 211/690 (30%), Gaps = 65/690 (9%)

Query: 182 GIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS 241
            ++   R       +   L      L                            +  +  
Sbjct: 167 ALLRATREAAAAVDVAIILLGDGDALEVHATAGIDDGPLPGPPLEAAREFARAVLALRGP 226

Query: 242 SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301
           +  +  A    V   E           +P   + H+I +     +      ++++     
Sbjct: 227 TSLDAAAGGLPVTAREIRARGLRAVYGVPLIHEGHSIGVAILGSRNAEEFSEDDALMLRT 286

Query: 302 YLSHRN-----------HPSLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSF 348
             S                +     D+   L    V++ P    +     G +  +NP  
Sbjct: 287 MTSRATGIIVQAQLVAKERAARRQADDARALLATVVEQMPAGLVIAEPPTGRVLLSNPQA 346

Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
             +     ++   I G        P+       +   L R+  T          I  +  
Sbjct: 347 GAIFGLPLLEIQNIDGYAVCRGSDPRSGRPYEARDWPLARTITTGEVVIDEEIDIVRDDG 406

Query: 409 NSLAMTFIPFEKANQFPENMPQNGI---EPEDVDTRINKRKMEIEVMQLCSILE------ 459
               +        +     M          E       +R +      L   L+      
Sbjct: 407 ARGRILVRSAPVRDPVGRVMAAVVTFFDITERTRAERGERFLAAASAALSDTLDFQGTLD 466

Query: 460 -----ATSDG----IAIINREG------IILSTNR----AVSKLFGY------------- 487
                   +     +     +        ++            LF               
Sbjct: 467 RVGHLTVPELADWCVIQTLPDLEQSRGLTVIHARPEELQRARALFRELDPPPPLVALLER 526

Query: 488 ----PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
                  +++  P    +     + +      + +L +   L    +   +    ++L  
Sbjct: 527 ALCSERPELIGDPSHPLIASLDENGVFRRF--VRALGITSALVVPLVARGRTFGCITLAT 584

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
                 +        HD+++        +   + A++    + + LA VSH++R PL+AI
Sbjct: 585 AGSGRVYDEADLAVAHDLAQRAALAADNARLYEAAQRAIELRDNVLATVSHDLRNPLSAI 644

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +  + V+  +     G     +    I RS + +  +++DLLD + + +G++ L  +P  
Sbjct: 645 LTAAAVMTKRAVTR-GEKGDTKAIQAIQRSAHRMDRLIHDLLDFASLRAGRLALRRQPQD 703

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
             E   EA+   +  A EK I +    A+++P +  D   V Q+  N+LSNA+  T + G
Sbjct: 704 PREIGREAVETFESQAQEKGIQLGVVAADDVPLVTCDRDRVLQVLTNLLSNALQVTGAQG 763

Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
            I +       E V+  V DTG G+   EL    + F +     +   +GTGLGL +A+ 
Sbjct: 764 AITLRCE-RGEEHVVFSVADTGPGIPENELPHLFERFWRGE---RNGYKGTGLGLAIARE 819

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
           +V A+ G   + S    GT      P+ D 
Sbjct: 820 LVAAHGGTIDVESRVGVGTTFRFTIPIIDE 849



 Score = 39.6 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 34/507 (6%), Positives = 96/507 (18%), Gaps = 57/507 (11%)

Query: 91  AHGYLKEISEELPKTIGNYAFK---MIGMRLCDVSDILHIDPNNH----IGDLLKRQNTW 143
             G +   + +     G    +   + G  +C  SD     P       +   +      
Sbjct: 335 PTGRVLLSNPQAGAIFGLPLLEIQNIDGYAVCRGSDPRSGRPYEARDWPLARTITTGEVV 394

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +     +        I + + P+                             + L   
Sbjct: 395 IDEEIDI-VRDDGARGRILVRSAPVRDPVGRV--MAAVVTFFDITERTRAERGERFLAAA 451

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQ-QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
            + L +      ++++  +    +         + +   S      H           L 
Sbjct: 452 SAALSDTLDFQGTLDRVGHLTVPELADWCVIQTLPDLEQSRGLTVIHARPEELQRARALF 511

Query: 263 TSEESSLPEQEDFHTINLNQYTK----------------KQYFGTLQNNSKESFEYLSHR 306
              +   P          ++  +                  +   ++     S   +   
Sbjct: 512 RELDPPPPLVALLERALCSERPELIGDPSHPLIASLDENGVFRRFVRALGITSALVVPLV 571

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANP------SFLLLTKYKSVDDI 360
                          +    D+  +            A        +     + +     
Sbjct: 572 ARGRTFGCITLATAGSGRVYDEADLAVAHDLAQRAALAADNARLYEAAQRAIELRDNVLA 631

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
            ++  L   L A   +     K  +         A  A   +          +       
Sbjct: 632 TVSHDLRNPLSAILTAAAVMTKRAVTRGEKGDTKAIQAIQRSAHRMDRLIHDLLDFA-SL 690

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEV---------------------MQLCSILE 459
                    Q     E     +   + + +                        L  +  
Sbjct: 691 RAGRLALRRQPQDPREIGREAVETFESQAQEKGIQLGVVAADDVPLVTCDRDRVLQVLTN 750

Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL 519
             S+ + +   +G I        +   + V D         L                  
Sbjct: 751 LLSNALQVTGAQGAITLRCERGEEHVVFSVADTGPGIPENELPHLFERFWRGERNGYKGT 810

Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIK 546
            L   + +  + +      + +   + 
Sbjct: 811 GLGLAIARELVAAH--GGTIDVESRVG 835


>gi|152994992|ref|YP_001339827.1| integral membrane sensor hybrid histidine kinase [Marinomonas sp.
           MWYL1]
 gi|150835916|gb|ABR69892.1| integral membrane sensor hybrid histidine kinase [Marinomonas sp.
           MWYL1]
          Length = 1154

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 74/253 (29%), Positives = 138/253 (54%), Gaps = 6/253 (2%)

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            + +I   ++    L +AK+ AE+ +  KS +L  +SHE+RTPL +IIG+++++  +   
Sbjct: 661 LIREIDAHQETDRALQNAKEQAERANEAKSRYLTGISHELRTPLQSIIGYAQLLSEKANT 720

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
           P G+       + I RSG  + D++  LLDISKIE+G+ +L+   V L + + +  S+  
Sbjct: 721 PSGH---QNGLDIIHRSGLYLADLIEGLLDISKIEAGRFDLYRNTVDLPKLIDQLNSMFA 777

Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
           + A +K I +++     +P+ ++ D + ++QI +N+LSNA+ +TP G  ++    +  N+
Sbjct: 778 MQARDKGIQLQSKILAPLPQHVVTDEKRLRQILINLLSNAVKYTPKGS-VLFEVNYR-NQ 835

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
                +RDTGVG+    L++   PF ++ +       GTGLGL + K + +   G     
Sbjct: 836 VAEFVIRDTGVGIKEGHLKRIFDPFERVRDVSTGNLPGTGLGLTIVKLLTEIMGGDIQAH 895

Query: 796 STPAKGTLIEIIF 808
           S   +G+   +  
Sbjct: 896 SVVGEGSEFRVSL 908


>gi|71906610|ref|YP_284197.1| PAS [Dechloromonas aromatica RCB]
 gi|71846231|gb|AAZ45727.1| PAS protein [Dechloromonas aromatica RCB]
          Length = 1187

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 102/840 (12%), Positives = 242/840 (28%), Gaps = 136/840 (16%)

Query: 90   DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ--NTWYGKT 147
            DA+     ++  L + +G  A +++G    +++    +  +    D + R   + +  + 
Sbjct: 370  DANKRWIVVNPALCQILGYSAEELLGKSWTELTHPDDLPASLAAFDDIVRGEVDGFEIEK 429

Query: 148  TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                 +G  +   +  AA  I   +          IV             +  +++   L
Sbjct: 430  RYLRADGATIAARV--AAQAIRKPDGRVD--SILTIVEDISARVAAEKAVRASEERLRRL 485

Query: 208  HEIKKG--------------HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253
             +                    +      +     +P   +    ++ +  +        
Sbjct: 486  GDNLPDSYLYQCCTGPDGHLQFTYLSSGVEPIHGLTPEEIMAHPERLFADVDPAHLPG-- 543

Query: 254  LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES---FEYLSHRNHPS 310
               +       +++    +      +      +      ++ S ++              
Sbjct: 544  -LLQAIADSERQQTDFVSELRLRKPDGQWRWLQIRSRPRRSPSGKTEWDGVATDVTARRE 602

Query: 311  LSAYFDEGENLTPETVDK-----------------CPIPFFVYSHGNLFYANP------S 347
                 D         ++                    I     S G   Y         +
Sbjct: 603  NETLLDLQSRRAHALLELPWQRKQMDEPHFLRHVIASIAQITDSAGGFIYFVGDDCTDLA 662

Query: 348  FLLLTKYKSVDD------IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401
                       D       E       +     +  ++        R       +     
Sbjct: 663  LAACWPATDGADNWQCRMSEAGQWADAIRLRQPILIDDYPAEERDRRRPNDLGLSRLASV 722

Query: 402  TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE---DVDTRINKRKMEIEVMQLCSIL 458
             +       L    I   +     +      I  +       +  ++ + I +     ++
Sbjct: 723  PVYGENGIQLLACLIDKPEPYSLQDIETIQLIASDAWRIASQQRAEQALRIAMQ----VV 778

Query: 459  EATSDGIAIINREGI--ILSTNRAVSKLFGYPVEDILRKP--FTVFLEQNTPSVMNHYLT 514
             A+          G   ++  +  V+  +GY V D++     F   +  +  S +   +T
Sbjct: 779  NASPVICFRWQATGGWPVVFVSDNVTN-WGYTVADLIAGNPAFADMVHPDDLSRVVEEVT 837

Query: 515  EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEW------ 564
               +      ++      T + +++ +    + L  +S     Y   + DI+E       
Sbjct: 838  RYTAEGRTDYIQ-EYRLLTGDGRVIWISDRTQVLRNASGGAEFYDGVLTDITERHTQTEE 896

Query: 565  ------------KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP------------- 599
                        K+ +    H + +  ++ +      A ++HE+  P             
Sbjct: 897  LTTTLAAQRQLNKRLEEA--HNQLLQSEKMASIGQLAAGIAHELNNPIGFVHSNLGTLES 954

Query: 600  ---------------------LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
                                 L A       ++ +R         I+  +      + V 
Sbjct: 955  YLRDLMEIIDAYDKGLADDTDLAAQRTAIARLREERDFAYVRGDIIQLLSESKDGLSRVR 1014

Query: 639  DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
             IV DL   S +        ++   L + +   +++V      K   +   +  +IP+I 
Sbjct: 1015 KIVQDLKTFSHVS----EQEWQWTDLHQGLDSTLNIVWNELKYK-CQVVKEY-GDIPKIH 1068

Query: 699  ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
              +  + Q+ +N+L NA H   + G I I T    ++ V + + DTG G+    L +  +
Sbjct: 1069 CLISQLNQVFMNLLVNAGHAIETRGTITIRTRRQGDDAVCIEISDTGKGIAPEHLSRIFE 1128

Query: 759  PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
            PF          G+GTGLGL L+  ++D + G+  + S    G+   II P+   + P +
Sbjct: 1129 PFFTTKP----VGKGTGLGLSLSYGIIDKHHGRIEVDSQLGVGSTFRIILPINQKNSPPE 1184



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 53/452 (11%), Positives = 119/452 (26%), Gaps = 23/452 (5%)

Query: 134 GDLLKRQNTWYGKTTLWPIEGTNLYVPIDLA-ALPIYSRNREFSGFRGFGIVHVNRVDND 192
              L R+     +       G+ L    +   AL I     +F GF G    +      D
Sbjct: 51  AGALDRRLLIIVRDLRIVAAGSALKRFTEDGDALEINRIAEDFLGFSGARSGYSQLRLLD 110

Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD 252
                            I        K     F      P       +         ++ 
Sbjct: 111 LTGQEIVRIDHDGKQARIADRAQLKNKADRYYFRDSIGLP----PGAIYLSPLDLNIENG 166

Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
            ++T   P L         Q     + +  Y   +  G + + + ++ ++L   N     
Sbjct: 167 RVETPYNPTLRIATPLADSQGKTRALLVLNYRASEMIGYVADVTTQAADHLMIVNQEGYF 226

Query: 313 AYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
            +     +      DK P     +     F A+ + +  T+     D      ++T   A
Sbjct: 227 LHAPNPADEWGFMFDK-PELSLPHR----FPASWATIQKTEQGQFSDSAGLWTVATAYSA 281

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
               D    +   +  +        A +         +         +A           
Sbjct: 282 RGRQDKADQENWSM--AQEQAWKVVAHVPPEAVPGMFAGWNATFFAIEALLLGLAAAVAA 339

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
                   +           +     E    G++I +     +  N A+ ++ GY  E++
Sbjct: 340 YMAGSTRQKREA------ETRFRIYFERAMVGMSINDANKRWIVVNPALCQILGYSAEEL 393

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
           L K +T     +          +I+  ++    E        +   ++ R+  + +    
Sbjct: 394 LGKSWTELTHPDDLPASLAAFDDIVRGEVDG-FEIEKRYLRADGATIAARVAAQAIRKPD 452

Query: 553 CYS----LTMHDISEWKQEKNKLSHAKKIAEK 580
                    + DIS     +  +  +++   +
Sbjct: 453 GRVDSILTIVEDISARVAAEKAVRASEERLRR 484


>gi|323700457|ref|ZP_08112369.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           sp. ND132]
 gi|323460389|gb|EGB16254.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           desulfuricans ND132]
          Length = 669

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 76/384 (19%), Positives = 160/384 (41%), Gaps = 27/384 (7%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTV 499
           ++ +R++     +  S+ ++  D I +++   G I   N    +L+GY  E+I+   F  
Sbjct: 296 KLYRRRLRESEEKYRSLFDSGPDPIFVVDCASGTIRDANPRTMELYGYYKEEIIGMKFLD 355

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH 559
              ++    +++++            +++   +  E   +++              + + 
Sbjct: 356 LGPEHNADCLDYFIEG--GGGCIYFPKRLHYKNGGEPFFVNMHACPISYRGKQAIIIAVT 413

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI--KNQRFGP 617
           DI+E  ++  +L  A K+         +  A ++HEI  PL AI   SE +    +    
Sbjct: 414 DITELIEKDAQLIQAAKM-----KSLGEMSAGMAHEINQPLNAIKVGSEFLSMMQEEDLA 468

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
           +    + E  N I    +   +I++ L    +    K +L  E V L++ V   +S+++ 
Sbjct: 469 IPKEHFKEVVNEISAQVDRAAEIIDTLRSFGR----KSDLMEESVDLNQPVRAVLSMIRR 524

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS--------GGQIIIST 729
                 I      A+N+  + A    ++Q+  N+++NA                +I I T
Sbjct: 525 QFELDNIRFELDLADNLATVQAHSNRLQQVIFNLVTNARDAIDDVSNEDADGDRRIRIRT 584

Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
            +  +  V + V DTG G+   + +K  +PF     +    G+G GLGL +   ++    
Sbjct: 585 GNLDH-RVFIEVEDTGCGIDEKDQQKIFEPFFTTKEA----GQGMGLGLAITYGIIKDYG 639

Query: 790 GKFYIFSTPAKGTLIEIIFPLYDT 813
           G+  I ST  +GT+  + FP  ++
Sbjct: 640 GEIRINSTRGRGTIFRMEFPAANS 663



 Score = 47.7 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 33/261 (12%), Positives = 71/261 (27%), Gaps = 10/261 (3%)

Query: 76  FDPIPRTVRFTWNID-AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG 134
           FD  P      + +D A G +++ +    +  G Y  ++IGM+  D+    + D  ++  
Sbjct: 313 FDSGPDP---IFVVDCASGTIRDANPRTMELYGYYKEEIIGMKFLDLGPEHNADCLDYF- 368

Query: 135 DLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPI--YSRNREFSGFRGFGIVHVNRVDND 192
             ++              +       +++ A PI    +            +        
Sbjct: 369 --IEGGGGCIYFPKRLHYKNGGEPFFVNMHACPISYRGKQAIIIAVTDITELIEKDAQLI 426

Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD 252
             A  K L +  + +        +  K   +  S          K     +    + + D
Sbjct: 427 QAAKMKSLGEMSAGMAHEINQPLNAIKVGSEFLSMMQEEDLAIPKEHFKEVVNEISAQVD 486

Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
               E    L S        E+   +N                    FE     N  ++ 
Sbjct: 487 RA-AEIIDTLRSFGRKSDLMEESVDLNQPVRAVLSMIRRQFELDNIRFELDLADNLATVQ 545

Query: 313 AYFDEGENLTPETVDKCPIPF 333
           A+ +  + +    V       
Sbjct: 546 AHSNRLQQVIFNLVTNARDAI 566


>gi|319745957|gb|EFV98240.1| sensor histidine kinase [Streptococcus agalactiae ATCC 13813]
          Length = 551

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 74/386 (19%), Positives = 166/386 (43%), Gaps = 34/386 (8%)

Query: 426 ENMPQNGIEPEDVDTRINKRKM--EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           E +       +    +I  +K+  +    +  +I+    +G+ +++ +  I+S N    K
Sbjct: 194 EEITPLLRRLDSHQAKIQHQKLLLQKRQKEFDTIISKIKEGMILLDDQARIVSINAEALK 253

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           LF    +          +E +    +   + + L    ++           E     + +
Sbjct: 254 LFQINDDW----HGRFMMEVSRDLTLKDLIDQGLKGKKKEA------NIDIENNHYRVLV 303

Query: 544 IIKKLPFS-SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
                    +   + + D+++  Q +                + +F A VSHE++TPL  
Sbjct: 304 RPTTDNNRVTGLVVLLFDVTDQLQME--------------QLQREFTANVSHELKTPLHV 349

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           I G+SE++ NQ    + N    ++A  I +    ++ +V D++++S ++  +  L  E V
Sbjct: 350 ISGYSELLANQM---VPNEEAPQFAAKIHKESERLVKLVEDIINLSHLDEQE-KLPQETV 405

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
           +L +   + +  +Q  A++K I I  +    I  +  +   +  +  N+  NAI +    
Sbjct: 406 NLYDLTQKVLEGLQAKADKKHIQINFNGEEAI--LRGNPVLLNSLVYNLCDNAITYNHEK 463

Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
           GQ+ ++    S++ + L V DTG+G+   + ++  + F ++  S+     GTGLGL + K
Sbjct: 464 GQVNVTLK-NSSDTITLEVSDTGLGIAEKDKKRIFERFYRVDKSRSKIVGGTGLGLSIVK 522

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIF 808
           + +D + G   + S   +GT + ++ 
Sbjct: 523 SALDFHNGSIKVDSHLGQGTTMTVLL 548


>gi|209548975|ref|YP_002280892.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|209534731|gb|ACI54666.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 510

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 82/530 (15%), Positives = 180/530 (33%), Gaps = 56/530 (10%)

Query: 319 ENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
            +     ++  P    +      +   N   L +        I     +  L        
Sbjct: 2   PHSFESILENLPQGIVLLDPANRVTAFNSRTLEILGLPD-GAIGKGMNIDRL-------- 52

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
                      + R              +    ++MT  P ++               + 
Sbjct: 53  --PGTADCRAAACRQSTTGRPHTSQFALSDGRMVSMTCAPSKEG-------GWILSYEDI 103

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
                 +  +  +  +  + L     G+ + +    ++  N A ++++  P  D+L +P 
Sbjct: 104 STLIRVEDSLTEQHHRFDAALSNMPHGLCMFDSTKKLILCNPAYARMYNLP--DLLTQPG 161

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SC 553
           T  ++               +       E    G+   + ++ +   + K+  +      
Sbjct: 162 TPLVDILAYRGREGNGPADTATYFDVVFEATARGAVASQNIVLVDGRVIKITHNPMQNGG 221

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS-------------------------DF 588
           Y  T  D+++  +   +L       E     ++                          F
Sbjct: 222 YVATHEDVTKTVRLTEELRRHHDQLETTVQSRTAEVERQARELERMLAQERNINELQRQF 281

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
           +A  SHE RTPL  I   ++ +  +R G +      +  + I  S N ++D++  +L   
Sbjct: 282 VAMASHEFRTPLAIIDAAAQRLLRKR-GAVEPEFLSDKVDQIRASVNRIVDLMESILSAG 340

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIA 708
           ++++GK+++ ++  +L   +          A   R             I AD R+V Q+ 
Sbjct: 341 RLDTGKIDISYDACALRSLIRSCCERQSTIAKTHR--FVLDIDGLPEFIDADPRTVAQVF 398

Query: 709 LNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
            N+LSNA+ + P   +I + T       V + + D GVG+   ++ +  + + +   S  
Sbjct: 399 TNLLSNAVKYAPGTSEIRV-TAWEETGNVKVSISDDGVGIDPEDVPRLFQRYFRAGTSTG 457

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
           I   GTG+GL L K +V+ + G   + S    G+   +  P+  T +  +
Sbjct: 458 IA--GTGIGLNLVKQIVELHHGSIEVRSARGCGSTFTVTLPIKRTGNASE 505


>gi|78186193|ref|YP_374236.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium luteolum DSM
           273]
 gi|78166095|gb|ABB23193.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium luteolum DSM
           273]
          Length = 967

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 105/564 (18%), Positives = 206/564 (36%), Gaps = 44/564 (7%)

Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
            + + L+         E+ SL  Q      N+    K      ++   ++    L     
Sbjct: 13  RRIEELERHAVESRIFEQVSLDRQALLRDQNIKLVRKSIELSDVKRQLEQKNRELEFSRS 72

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
               A   +        ++         S G +   + +  ++   + V   + A  +  
Sbjct: 73  QVEEAM--DSLRRNENILNS----ILANSPGTIVSVDSAHSIIYMNRPVPGFDAAFHVGD 126

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
            L          +  + + R   +    S        +   +       F    Q  E  
Sbjct: 127 SLYNHLQGPGQDVFRMTVDRVFASERPPSIESEFTLPDGGTAEV--ECRFGPCLQGGEVA 184

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
               I  +    +  +R ++  +                    G +   NR    + G  
Sbjct: 185 SVVVIMSDISPRKRMERDLQRSI--------------------GDLERFNRI---MVGRE 221

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE-EKLLSLRIIIKK 547
           +  I  +     L     +     +++     L         G  +  ++ + L +I + 
Sbjct: 222 MHAIELQKELDMLSGRAVAHSCDGVSDDAGSPLSAVGADEDTGPDRNLQRTVLLNLIDEA 281

Query: 548 LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
               +            ++   +     + A + ++ K  FLA +SHEIRTP+  +IG +
Sbjct: 282 NQTRNELLEANR---RLEESVLRTQLMAEEAREANAAKGQFLANMSHEIRTPMNGVIGMA 338

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
           +++         +    +Y   I  SG  +L I+ND+LD SKIE+G++ L  E   L E 
Sbjct: 339 DLLLETDL----DQEQQKYVQTIISSGRNLLKIINDILDFSKIEAGRLELEHEEFELAEL 394

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII 726
           + E   ++   A    + +  S A + P R+  D + ++Q+ +N+L NA+ FT  GG++I
Sbjct: 395 LEELGCMLGPEAQAAGLELTLSIAPDGPTRLKGDPQRLRQVLVNLLGNAVKFTHEGGEVI 454

Query: 727 ISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
           + +T     E    V   VRD+G+G+    ++   +PF Q+  S   R  GTGLGL ++ 
Sbjct: 455 LESTVQKETELYAVVRFSVRDSGIGIPQDRIDSIFEPFSQVDGSSVRRYGGTGLGLSISN 514

Query: 783 AMVDANMGKFYIFSTPAKGTLIEI 806
            +V    G+  + ST  +G+    
Sbjct: 515 HLVGRMGGRINVQSTLDEGSTFWF 538



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/290 (12%), Positives = 81/290 (27%), Gaps = 36/290 (12%)

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
              I+ +  +  +       +         +N   +         +         +E   
Sbjct: 12  ERRIEELERHAVESRIFEQVSLDRQALLRDQNIKLVRKSIELSDVKRQLEQKNRELEFSR 71

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
                    +      L SIL  +   I  ++    I+  NR V    G+     +    
Sbjct: 72  SQVEEAMDSLRRNENILNSILANSPGTIVSVDSAHSIIYMNRPVP---GFDAAFHVGDSL 128

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK---LPFSSCY 554
              L+     V    +  + + +   ++E        +     +             +  
Sbjct: 129 YNHLQGPGQDVFRMTVDRVFASERPPSIESEFTL--PDGGTAEVECRFGPCLQGGEVASV 186

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHK-------------SDFLAR--VSH----- 594
            + M DIS  K+ +  L  +    E+ +                 D L+   V+H     
Sbjct: 187 VVIMSDISPRKRMERDLQRSIGDLERFNRIMVGREMHAIELQKELDMLSGRAVAHSCDGV 246

Query: 595 --EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
             +  +PL+A+        ++  GP  N +     N ID +     +++ 
Sbjct: 247 SDDAGSPLSAVG------ADEDTGPDRNLQRTVLLNLIDEANQTRNELLE 290


>gi|323484400|ref|ZP_08089766.1| hypothetical protein HMPREF9474_01517 [Clostridium symbiosum
            WAL-14163]
 gi|323402178|gb|EGA94510.1| hypothetical protein HMPREF9474_01517 [Clostridium symbiosum
            WAL-14163]
          Length = 1300

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 76/257 (29%), Positives = 117/257 (45%), Gaps = 13/257 (5%)

Query: 570  KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
            + +  ++  +  S  K DFL+R+SHEIRTP+ AIIG + +  ++           E    
Sbjct: 907  ETNINRERYDLASRAKIDFLSRMSHEIRTPMNAIIGMTAIAMDR---AKQEEGVKECLIK 963

Query: 630  IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
            ID+S   +L ++ND+LD+SKIESGKM L     S+ +   E   L++    +K I     
Sbjct: 964  IDQSSQYLLSLINDILDMSKIESGKMKLACNNGSIMKMAEEIDDLMESQMRQKNITCIRD 1023

Query: 690  FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST--------THTSNEEVIL-- 739
                 P + ADL  +KQ+ +N+ SNA+ FT  GGQI  S               E     
Sbjct: 1024 IQVENPWVYADLMRLKQVIINLFSNAVKFTNEGGQIRFSVYEQKMERRQPEDRNEAEFFF 1083

Query: 740  RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
             V D G+G++    E+    F Q  +       GTGLGL ++  +V    G+  + S   
Sbjct: 1084 AVEDNGIGISPQNRERIFNAFEQAEDDTAAAYGGTGLGLSISSRLVRMMGGEIGLESREG 1143

Query: 800  KGTLIEIIFPLYDTSHP 816
            +G+             P
Sbjct: 1144 EGSRFSFTLRFIRAEEP 1160


>gi|242783978|ref|XP_002480294.1| sensor histidine kinase/response regulator, putative [Talaromyces
            stipitatus ATCC 10500]
 gi|218720441|gb|EED19860.1| sensor histidine kinase/response regulator, putative [Talaromyces
            stipitatus ATCC 10500]
          Length = 2394

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 75/282 (26%), Positives = 130/282 (46%), Gaps = 14/282 (4%)

Query: 536  EKLLSLRII-IKKLPFSSCYSLTMHDISEW-KQEKNKLSHAKKIAEKESSHKSDFLARVS 593
             ++  +       +           +  +  K  + + +H  K+ E  +  KS FLA VS
Sbjct: 1839 RRVRKVSATNAAMVESQKRALAQAREAEQKAKIAEAEANHNVKLKEDAARAKSVFLANVS 1898

Query: 594  HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
            H++RTP+  +IG SE++K  +     +     Y   I    + +L ++ND+LD SK+E+G
Sbjct: 1899 HDLRTPMNGVIGLSELLKGTKL----DKEQDNYVESIRVCADTLLTLINDILDFSKLEAG 1954

Query: 654  KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA--NNIPRILADLRSVKQIALNI 711
            KM +   P+SL E + E +  ++    ++ +              ++ D   + QI +N+
Sbjct: 1955 KMKISTVPLSLKETIREVVRALRYTHRDRGLETIEDLDKVPEDLVVMGDPVRLHQIFMNL 2014

Query: 712  LSNAIHFTPSGGQIIIS--TTHTSNEEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
            LSN+  FTP G  + +S          V L   V DTG+G+      +  +PF Q  NS 
Sbjct: 2015 LSNSYKFTPKG-YVKVSAMVVREGKGRVRLECSVADTGIGIPEEHKSRLFRPFSQADNST 2073

Query: 768  QIRGEGTGLGLPLAKAMVDA-NMGKFYIFSTPAKGTLIEIIF 808
                 G+GLGL + KA+++    G  ++ STP  GT +    
Sbjct: 2074 ARSYGGSGLGLSICKAIIEDVLGGLIWLDSTPGVGTTVTFQL 2115


>gi|225405520|ref|ZP_03760709.1| hypothetical protein CLOSTASPAR_04740 [Clostridium asparagiforme
           DSM 15981]
 gi|225042932|gb|EEG53178.1| hypothetical protein CLOSTASPAR_04740 [Clostridium asparagiforme
           DSM 15981]
          Length = 722

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 97/441 (21%), Positives = 179/441 (40%), Gaps = 23/441 (5%)

Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
                +     L+ ++ +    ++                   G        R  +    
Sbjct: 270 KRGWQLVTVVALNAVEKDGAQIISTAVAMATVIIGVVVTALAAGSFLYWSMRRKQQENDR 329

Query: 449 IEVMQLCSILEATSDGIAIINREGI---ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
             +    +I E T   I I+N        +  N    ++ G P E+ L++      +Q  
Sbjct: 330 FLLDIYQAISENTDTVIFILNARSAAPDYVFENSG--RILGIPAEEFLKQE-----QQEQ 382

Query: 506 PSVMNHYLTEILSLDLRQTL-EKITLG---STKEEKLLSLRIIIKKLPFSSCYSLTMHDI 561
            S     L  IL          +           +  L + I    L         + D+
Sbjct: 383 DSAFRSKLQAILEEPWPSEGCTREVHTYNERLHRDMWLKILICPFLLGDEKKCLYAVTDV 442

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           ++   ++ K++ A  +AE+ ++ KS+F + +SH++RTP+  I+G +  I  +  G     
Sbjct: 443 TQEHNDREKIAAAVVVAEQANAAKSNFFSSMSHDMRTPMNGIVGMT-TIAKRSLG--DQD 499

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
           R ++  N ID S   +L ++ND+LD+SKIESGK+ L  EP  L E +    ++++     
Sbjct: 500 RVLDCLNKIDFSSRHLLGLINDVLDMSKIESGKLALVCEPFDLGELLLGLEAILRPQCES 559

Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST-THTSNEE---V 737
           K   +  +      R++ D   + QI +N+LSNA+ FT  GG +  +             
Sbjct: 560 KGQTLTFTVNIRHLRLMGDTLRLNQIFMNLLSNAVKFTQEGGAVSFTAQELEQRGNSPTF 619

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
              V D G+G+     +    PF ++ N+   + EGTGLGL + K ++ A  G+  + S 
Sbjct: 620 RFTVADNGIGIAQEAQQIIFTPFERVSNTAVHQIEGTGLGLAITKNLITAMGGQITLKSA 679

Query: 798 PAKGTLIEI--IFPLYDTSHP 816
           P +G+   +    P+ +   P
Sbjct: 680 PGQGSAFTVDLDLPMQEGELP 700


>gi|253700345|ref|YP_003021534.1| histidine kinase [Geobacter sp. M21]
 gi|251775195|gb|ACT17776.1| histidine kinase [Geobacter sp. M21]
          Length = 1361

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 76/247 (30%), Positives = 126/247 (51%), Gaps = 3/247 (1%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E  +    L   K+  E+ +  KS+FL+ +SHE+RTPL +++  S V+  Q    L    
Sbjct: 564 ELSRHNQVLDLQKQQLEEATRLKSEFLSNMSHELRTPLNSVLALSRVLAVQGSSRLTEDE 623

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
              Y + I+R+G  +L ++ND+LD++KIESG+  +  E VSL +  +E +  + + A EK
Sbjct: 624 -KGYLSIIERNGKHLLSLINDILDLAKIESGRQEVFLESVSLRKVAAEVVDGLSVLAREK 682

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
            I +       +P  + D++ ++Q+  N++ NAI FT  G  + +       EE ++ V 
Sbjct: 683 GIALSLEAPEGLPAAVIDVKRLRQMLQNLIGNAIKFTAEGS-VTVRLDAE-GEEFLIEVE 740

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG+G+    LE     F Q   S     EGTGLGL + K       G   + S   +G+
Sbjct: 741 DTGIGIAPQYLESIFHEFRQADGSTSRSFEGTGLGLAIVKKTARLLGGDVSVRSELGEGS 800

Query: 803 LIEIIFP 809
           +  +  P
Sbjct: 801 VFTLRLP 807


>gi|160885771|ref|ZP_02066774.1| hypothetical protein BACOVA_03775 [Bacteroides ovatus ATCC 8483]
 gi|156108584|gb|EDO10329.1| hypothetical protein BACOVA_03775 [Bacteroides ovatus ATCC 8483]
          Length = 563

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 99/510 (19%), Positives = 179/510 (35%), Gaps = 49/510 (9%)

Query: 324 ETVDKCPIPFFVYS---HGNLFYANPSFLLLTKYKSVDDI---------EIAGGLSTLLD 371
           + +D  P P FV         +Y N      +   S + I         E  G     +D
Sbjct: 78  DILDNLPFPIFVKDITNDFRYYYWNKESAAQSGISSEEAIGHTDYEIYGEERGEKYRHID 137

Query: 372 APKLSDNNAIK-PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
              + +    +        D       A    I W  E    +                 
Sbjct: 138 KELIQEGKVYRKEEKYTTPDGITHDTIAVKSIISWEGEKKWLLATR-------------- 183

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLC-------SILEATSDGIAIINREGIILSTNRAVSK 483
                +    +  +R++     +L          L++   G+  I++   +         
Sbjct: 184 ----WDITQLKNYERELVAAKEELEKALKKQKLALKSIDFGLIYIDKNYRVQWEETRQIA 239

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
                   I  K                   + +                 E     +  
Sbjct: 240 SLVKGRRYIPGKICYQTSALRNEPCGQCAFKKAIEQGKIIRHTIRVDDVDFEVTATPVFG 299

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
             K+            +I+E  +    L  AK+ AE+ +  KS FLA +SHEIRTPL AI
Sbjct: 300 DEKETEIIGGLLR-FENITEKLKMDKMLQEAKEKAEESNRLKSAFLANMSHEIRTPLNAI 358

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +GFSE+I              E+   I  +  L+L +++D+LD+SKIE+G M   F    
Sbjct: 359 VGFSEMICQTEEEEE----RKEFVKIISSNNILLLQLIDDILDLSKIEAGTMEFTFAQTD 414

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
           ++E +      +Q   +   + I  +   +   +  D   + Q+ +N  +NA+ FTP G 
Sbjct: 415 INELMEGICRQMQEKNSSPDVQILFTEKADQCMMYTDRIRLSQVIINFTNNALKFTPKGS 474

Query: 724 QIIISTTHTS-NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
            I +        +E+   V+DTG+G+   +++K  + F ++ +      +GTGLGL + +
Sbjct: 475 -IEMGYRIEEAKDEIYFYVKDTGIGIPADKIDKVFERFVKLNSFI----KGTGLGLAICR 529

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
            +V+   G   + S   +G+      P  +
Sbjct: 530 VIVERLGGVIGVESKEGEGSRFWFRIPRSE 559


>gi|300866672|ref|ZP_07111358.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
 gi|300335346|emb|CBN56518.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
          Length = 1013

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 73/251 (29%), Positives = 140/251 (55%), Gaps = 11/251 (4%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E +Q   ++  AK+ A+  ++ KS+FLA +SHE+RTPL  I+G++++++        + +
Sbjct: 542 EIQQVNVEIQQAKEFADAANNAKSEFLANMSHELRTPLNGILGYAQILQR---SEPLSEK 598

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             +  + I + G+ +L ++ND+LD+SKIE+ K++L+  P+ L   +   I + ++ A +K
Sbjct: 599 GHKGIDIIYQCGSHLLTLINDILDLSKIEARKLDLYPAPLHLPSFLQNVIEINRIRAEQK 658

Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-VILR 740
            I       + +P  + AD + ++Q+ +N+L NAI FT  G    ++       + +  +
Sbjct: 659 GITFDYQANSQLPIGVYADEKRLRQVLINLLGNAIKFTDKGS---VTFKVEPIGQKIRFQ 715

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           + DTG GMT+ ++EK   PF Q+    + + EGTGLGL ++  +V     +  + S P +
Sbjct: 716 IADTGTGMTSEQVEKIFLPFEQV-GDTKKQAEGTGLGLAISHKIVALMGSEITVDSIPGE 774

Query: 801 GTLIE--IIFP 809
           G+     +  P
Sbjct: 775 GSTFSFEVELP 785


>gi|298481013|ref|ZP_06999208.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
 gi|298273036|gb|EFI14602.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
          Length = 628

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 112/524 (21%), Positives = 202/524 (38%), Gaps = 32/524 (6%)

Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSV 357
             E     +  S        E L        PI   +Y   G L   N   L +   +  
Sbjct: 117 ISEVQDGPDMASAYQALQYSERLLSNIFKYLPIGIELYDMDGVLVDLNDKELEMFHIEKK 176

Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
           +D+         +   ++ +         +          +     Q     ++ +    
Sbjct: 177 EDVLGINIFDNPIFPKEMKERLKKNEDADFTFRYDFSKVGSYYQNTQKQG--TIDLMTKV 234

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
               N   + +    I  +  +T +   K++        + +    G A  N    ILS 
Sbjct: 235 TTLYNSEHQPINYLLINADKTETTVAYNKIQEFEEFFELVGDYAKVGYAHFN----ILSG 290

Query: 478 NRAVSKLFGYPVEDILRKPFTVFL------EQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
           +    K +   V +    P +           +  +++  +L +     L   L K    
Sbjct: 291 HGYAQKSWYRNVGEADETPLSDIFGTYRHFHPDDRALLIRFLDDARK-GLTTQLSKEMRV 349

Query: 532 STKEEKLLSLRII--IKKLPFSSCYSLTMH---DISEWKQEKNKLSHAKKIAEKESSHKS 586
             ++       +   +KK          +    DI+E K+ +  L  A+  AE     KS
Sbjct: 350 LREDGTYTWTHVNLLVKKYAPQDRIIEIISINYDITELKRTEEMLVKARDKAEASDRLKS 409

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
            FLA +SHEIRTPL AI+GFS ++ +             Y + I  +  L+L+++ND++D
Sbjct: 410 AFLANMSHEIRTPLNAIVGFSSLLTSTESAA----EKELYNSLIGHNNKLLLNLINDVID 465

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706
           +SKIESG + L  + V+L E + E+++          + + T++  +   +  D   +KQ
Sbjct: 466 LSKIESGYLELRPDWVNLTELLDESVAEYAHQVPS-GVELLTNYPAHDSLVELDKLRIKQ 524

Query: 707 IALNILSNAIHFTPSGGQIIISTTHT-SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           I  N LSNA+  T +G    +   +   ++ V + V+DTG G+    LEK  + F ++ +
Sbjct: 525 ILSNFLSNALKNTTTG---HVEVFYEVDHQSVRIGVKDTGRGIPQNMLEKIFERFEKLDS 581

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
                 +G GLGLP+ K +V+   G+  + S    GT   I  P
Sbjct: 582 F----AQGAGLGLPICKLIVEKMNGRILVDSQLGIGTTFIIELP 621



 Score = 42.3 bits (98), Expect = 0.37,   Method: Composition-based stats.
 Identities = 10/103 (9%), Positives = 29/103 (28%)

Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450
                               +       E      E +       +  D     + ++  
Sbjct: 77  GVYQWPEVVYLLDTVKGSVWVRSKVCFQETDEGGNEIIYGISEVQDGPDMASAYQALQYS 136

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
              L +I +    GI + + +G+++  N    ++F    ++ +
Sbjct: 137 ERLLSNIFKYLPIGIELYDMDGVLVDLNDKELEMFHIEKKEDV 179


>gi|168699112|ref|ZP_02731389.1| Multi-sensor Hybrid Histidine Kinase [Gemmata obscuriglobus UQM
           2246]
          Length = 1099

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 105/794 (13%), Positives = 227/794 (28%), Gaps = 94/794 (11%)

Query: 90  DAHG--YLKEISEELPKTIGNYAFKMIGMR--LCDVSDILHIDPNNH-IGDLLKRQNTWY 144
           D  G      +S      +G     +I       D+     +      I + L+      
Sbjct: 180 DPAGQMRCTYLSPNAAALLGAPTEPLIERPERFFDLVTAEDLPRLRASIAETLRTGANDL 239

Query: 145 GKTTLWPIEGTNLYVPIDLAA---LPIYSRNREFSG--------------FRGFGIVHVN 187
            +  L   +G   +          LP  S+ R+                   G  +  +N
Sbjct: 240 VEARLRHADGGVRWFQFRSRLVERLPDGSQVRDGVATDVTAAKETEHALRVSGDQLARLN 299

Query: 188 RVDNDPRA----LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH-----LRMKN 238
               D  A       R ++++S L E        +     +               R   
Sbjct: 300 AELEDEAARRASALLRSEQRYSDLVENIHDALVRDDNAGRLVYANRRFREWFGVPDRPAG 359

Query: 239 KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE 298
            V+            L+     L+  E      + +    + ++   + +   +  +   
Sbjct: 360 PVALDEHAAPEWRAALRDRHDRLVRGEAVPDRFEYEGVRCDGSRVWLEAHVTAVLED-GR 418

Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVD 358
           +    +     +     +         + +   P F  +      A     +    + + 
Sbjct: 419 TVGTQAVLRDVTARKRTETVLRFLSTELARLTGPEFFAAVARQLAAVLGAEVGFVAELLP 478

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVM------LYRSDRTCIAASARLH----------- 401
            +      +  L    +        +       +   D        R             
Sbjct: 479 RMSPPRVRTLGLCIDGVPQPEHEHALTGGPCEAVLHRDAVVYPDRVREQFPDEPGLAGLG 538

Query: 402 -----TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
                 +     +   +  +         +      +          + + +       +
Sbjct: 539 ARGYAAVALLDRSGRPLGHLGVVSRGPLRDAEQIEPVLQLFAVRVGAEIERQHGARMFHN 598

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           + E   D I + + +G I   NR   +LFG+   ++L     + L          +    
Sbjct: 599 LFEFAPDAIVMTDPQGAIRLANRQAEELFGWSRAELLGHRAEMLLAPEHRDRFVLHRPRH 658

Query: 517 LSLDLRQTL---EKITLGSTKEEKLLSLRIIIKKLPFSSCYS--LTMHDISEWKQEKNKL 571
              D    +           K+  +  + + +  L     +     + D++E  + + ++
Sbjct: 659 AGGDTPVPVAPTAPDLRALRKDGTVFPIEVRVAPLEVDGAWVTAAAVRDVTERHRLERQI 718

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
           + A ++              ++H++   L  I    + +K+        P + E  + ++
Sbjct: 719 NRAHRL-----EAIGTLAGGIAHDLNNALAPITMALQTLKHSY------PDHAELLDVLE 767

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
                   +V  LL  +K   G        VS    ++EA  +V      K I +  ++ 
Sbjct: 768 AGAGRAAGMVRQLLTFAK---GGEENTRIAVSARAVLTEAEKIVHSTFP-KNIALTVTYP 823

Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT----------------HTSNE 735
             +P +LA+   + Q+ LN+  NA    P+GG + +S                       
Sbjct: 824 PGLPALLANPTQLHQVLLNMCVNARDAMPAGGALTLSAEAAELDQAAADALAEFGARPGS 883

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            V+L+V DTG G+     E   +PF     +      GTGLGL  A  +V ++ G   + 
Sbjct: 884 YVVLKVGDTGGGIPADVAEHIFEPFFTTKGADT----GTGLGLFSALGIVKSHGGFIRVT 939

Query: 796 STPAKGTLIEIIFP 809
           S P  GT   +  P
Sbjct: 940 SAPGLGTTFAVYLP 953



 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/228 (10%), Positives = 56/228 (24%), Gaps = 24/228 (10%)

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
              ++   +D        +    +                               +    
Sbjct: 88  DAELLGRAADARPFGYLVKPFDERELNATIQMALAKHRLDRAARAAQDQLEERVRDRT-- 145

Query: 441 RINKRKMEIEVMQLCSILEATSDGI-----------AIINREG--IILSTNRAVSKLFGY 487
                ++E    +L    E    GI            + +  G       +   + L G 
Sbjct: 146 ----AELERANARLRDR-ELLLSGINTNLVGAAVYRLVFDPAGQMRCTYLSPNAAALLGA 200

Query: 488 PVEDILRKP--FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
           P E ++ +P  F   +       +   + E L       +E     +    +    R  +
Sbjct: 201 PTEPLIERPERFFDLVTAEDLPRLRASIAETLRTGANDLVEARLRHADGGVRWFQFRSRL 260

Query: 546 KKLPFSSCYS--LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
            +              D++  K+ ++ L  +     + ++   D  AR
Sbjct: 261 VERLPDGSQVRDGVATDVTAAKETEHALRVSGDQLARLNAELEDEAAR 308


>gi|111220245|ref|YP_711039.1| putative two-component hybrid sensor and regulator [Frankia alni
           ACN14a]
 gi|111147777|emb|CAJ59437.1| putative Two-component hybrid sensor and regulator [Frankia alni
           ACN14a]
          Length = 680

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 85/548 (15%), Positives = 180/548 (32%), Gaps = 86/548 (15%)

Query: 316 DEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIA----------- 363
           +   +L    +D  P         G +   N     L  Y   +                
Sbjct: 28  ESTSSLARGLLDAAPDAIVGVRANGRIALVNAQAERLFGYTREELHGEPVEILIPESGRH 87

Query: 364 ---GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
                 S+ L  P+     A   +   R D +   A   L  I                 
Sbjct: 88  LHPHHRSSYLSDPQPRPMGAGMELAGRRRDGSEFPAEISLSAI----------------- 130

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
             +  + +       +  + +  +        +   +L++  D I  +  +G I   N  
Sbjct: 131 --ESGDGLLITAAVRDVTERKRTEA-------KFRGLLDSAPDAIVAVLSDGRIALVNTQ 181

Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL--EKITLGSTKEEKL 538
             +LFGY  +++  +   + + +   S    +          + +  +       ++   
Sbjct: 182 AERLFGYSRDELHGQSVEILVPEAGRSHHPQHRERYFHDPRPRPMGAQMQLAARRRDGSE 241

Query: 539 LSLRIIIKKLPFSSCYSLT--MHDISEWKQEKNKLSHAKKIAEK-----------ESSHK 585
               I +  L       ++  + D+++  + + +    +  AE+                
Sbjct: 242 FPAEISLSALETEDGLLVSAAIRDVTDRLEAQAERERLRAQAERKRIEAQLHQSQRLESL 301

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKN------QRFGPLGNPRYIEYANYIDRSGNLVLD 639
                 V+H+    L  II ++  +        +R G      + +    + R+      
Sbjct: 302 GQLAGGVAHDFNNLLGVIINYTAFVGEVVATAAERDGGQWEAAHRD-IEQVQRAAERATQ 360

Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA 699
           + + LL   + E     +    ++L++ V +   +++    E  + + T  A +   + A
Sbjct: 361 LTHQLLAFGRRE----VVQPRVLNLNDVVHDIEEMLRRTLGEH-VELITLPAADPWPVFA 415

Query: 700 DLRSVKQIALNILSNAIHFTPSGGQIIISTT--------------HTSNEEVILRVRDTG 745
           D   ++Q+ +N+  NA    P GG++ I T+                +   V LR+ D+G
Sbjct: 416 DAGQLEQVLVNLAVNARDAMPGGGKLTIDTSNILVHEDIAGDRPGLKAGRHVNLRISDSG 475

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
            GM    + +A +PF         +GEG+GLGL     ++    G   IFS    GT + 
Sbjct: 476 SGMAPETVSRAFEPFFTTK----RKGEGSGLGLATVYGIITQAGGHAEIFSDVGLGTTVS 531

Query: 806 IIFPLYDT 813
           I+ P  D+
Sbjct: 532 ILLPAVDS 539



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 26/273 (9%), Positives = 61/273 (22%), Gaps = 20/273 (7%)

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
                    +   G  +  +        +    + R +     +          L     
Sbjct: 34  ARGLLDAAPDAIVGVRANGRIALVNAQAERLFGYTREELHGEPVEILIPESGRHLHPHHR 93

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
               S+    P       +   +    ++   +  ++ ES + L               E
Sbjct: 94  SSYLSDPQPRPM-GAGMELAGRRRDGSEFPAEISLSAIESGDGLLITAAVRDVTERKRTE 152

Query: 320 NLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEI--------------AG 364
                 +D  P     V S G +   N     L  Y   +                    
Sbjct: 153 AKFRGLLDSAPDAIVAVLSDGRIALVNTQAERLFGYSRDELHGQSVEILVPEAGRSHHPQ 212

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
                   P+     A   +   R D +   A   L  ++      ++            
Sbjct: 213 HRERYFHDPRPRPMGAQMQLAARRRDGSEFPAEISLSALETEDGLLVSAAIRDVTDRL-- 270

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
            E   +        + +  + ++  +  +L S+
Sbjct: 271 -EAQAERERLRAQAERKRIEAQL-HQSQRLESL 301



 Score = 46.6 bits (109), Expect = 0.019,   Method: Composition-based stats.
 Identities = 42/495 (8%), Positives = 112/495 (22%), Gaps = 44/495 (8%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH--IDPNNHIGDLLKRQNTWYG--- 145
           A+G +  ++ +  +  G    ++ G  +  +       + P++    L   Q    G   
Sbjct: 50  ANGRIALVNAQAERLFGYTREELHGEPVEILIPESGRHLHPHHRSSYLSDPQPRPMGAGM 109

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +      +G+     I L+A+          G      V          A  + L     
Sbjct: 110 ELAGRRRDGSEFPAEISLSAIESGD------GLLITAAVRDVTERKRTEAKFRGLLDSAP 163

Query: 206 HLHEI---KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
                       + V  +   +F       H +    +        H     +    P  
Sbjct: 164 DAIVAVLSDGRIALVNTQAERLFGYSRDELHGQSVEILVPEAGRSHHPQHRERYFHDPRP 223

Query: 263 TSEESSLPEQEDFHT-----INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
               + +               ++    +   G L + +                     
Sbjct: 224 RPMGAQMQLAARRRDGSEFPAEISLSALETEDGLLVSAAIRDVTDRLEAQAERERLRAQA 283

Query: 318 GENLTPETVDKCP--IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
                   + +          + G     N    ++  Y +   +      +   D  + 
Sbjct: 284 ERKRIEAQLHQSQRLESLGQLAGGVAHDFNNLLGVIINYTAF--VGEVVATAAERDGGQW 341

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
              +     +   ++R        L   +        +         +            
Sbjct: 342 EAAHRDIEQVQRAAERATQLTHQLLAFGRREVVQPRVLNLNDVVHDIEEMLRRTLGEHVE 401

Query: 436 EDVDTRINKRKMEIEVMQLCSIL--------EATS-DGIAIINREGIILSTNRAVSKLFG 486
                  +   +  +  QL  +L        +A    G   I+   I++        + G
Sbjct: 402 LITLPAADPWPVFADAGQLEQVLVNLAVNARDAMPGGGKLTIDTSNILVH-----EDIAG 456

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
                   +   + +  +   +    ++              T     E   L L  +  
Sbjct: 457 DRPGLKAGRHVNLRISDSGSGMAPETVSRAFEP-------FFTTKRKGEGSGLGLATVYG 509

Query: 547 KLPFSSCYSLTMHDI 561
            +  +  ++    D+
Sbjct: 510 IITQAGGHAEIFSDV 524


>gi|307264990|ref|ZP_07546551.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919975|gb|EFN50188.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 461

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 66/246 (26%), Positives = 123/246 (50%), Gaps = 7/246 (2%)

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
             +  +   +   +    K++F++ +SHE++TPLT+I GF+    +       N    EY
Sbjct: 222 LADSFNKMAEELGQLEEMKNEFISNISHELKTPLTSIKGFAITAMD---LVEKNSELYEY 278

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
            N ID   + +  +V++LLD SKIE  K+ L FE V LD+ + + +++++ +A+   + +
Sbjct: 279 LNIIDEETDRLSRLVDELLDFSKIELNKIKLSFEEVELDKLIEDTVAILRPHASNDGVNL 338

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
                 +   I  D+  +KQ+ +NI+ N I     G  + +       + V +R+ D G 
Sbjct: 339 ICKKKIDRVVINGDVNRLKQVLVNIIDNGIKACSRGKYVKVFLDIKDKKAV-IRIEDQGQ 397

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+   E++     F +  N    +  GTGLGL ++K +++ + G   + S   KG++  I
Sbjct: 398 GIPQEEIKYIFDKFYRGKN---NKYSGTGLGLAISKKIIEEHKGTITVESEVGKGSVFTI 454

Query: 807 IFPLYD 812
             PL D
Sbjct: 455 ELPLKD 460


>gi|304312091|ref|YP_003811689.1| sensor histidine kinase/response regulator [gamma proteobacterium
           HdN1]
 gi|301797824|emb|CBL46046.1| sensor histidine kinase/response regulator [gamma proteobacterium
           HdN1]
          Length = 840

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 73/256 (28%), Positives = 119/256 (46%), Gaps = 16/256 (6%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E      K     +IA      KS+FLA +SHEIRTP+  +IG SE++ + +        
Sbjct: 420 EAHAALEKAEQETRIARHNMRAKSNFLAMMSHEIRTPMNGVIGISELLSHTQLDSA---- 475

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
              Y + I  SG  +L +VND+LD SK+E+ K+ L   P  L E + E + ++       
Sbjct: 476 QQRYVSTIRNSGEALLRLVNDILDFSKLEARKLTLEDIPFHLPEMLQECVDILTPKIQGS 535

Query: 683 RILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----- 736
            + +R   +N +P  +  D   ++QI LN+  NA+ FT  G  + I+ +           
Sbjct: 536 AVDLRLQISNKLPKMVNGDPTRLRQIILNLGGNALKFTRKG-HVTIAVSFQDENFQPHQS 594

Query: 737 -----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
                +   V DTG+G+T  ++++  +PF Q   S   +  GTGLGL + K + +   G 
Sbjct: 595 NDDLLLRFTVSDTGIGLTEEQIQRLFQPFQQAEISTARQFGGTGLGLVICKDLAELMGGS 654

Query: 792 FYIFSTPAKGTLIEII 807
             + S   +G      
Sbjct: 655 IGVHSISGEGATFWFT 670


>gi|17228673|ref|NP_485221.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17130525|dbj|BAB73135.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 922

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 78/255 (30%), Positives = 136/255 (53%), Gaps = 14/255 (5%)

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
           + D ++      +L  AK  A+  +  KS+FLA +SHE+RTPL  I+G++++++      
Sbjct: 434 VRDRTQ------ELETAKIAADVANQAKSEFLASMSHELRTPLNGILGYAQILERSENIA 487

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
              P  +E  N I + G+ +L ++ND+LD+SKIE+GK+ LH         ++  + + ++
Sbjct: 488 ---PAALEGINIIHQCGSHLLILINDILDLSKIEAGKLELHNTDFDFSYFLTGVVEMCRI 544

Query: 678 YANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTS 733
            A +K I        ++P+ I AD + ++QI +N+L NAI FT +GG    I +      
Sbjct: 545 RALQKGISFHYLPDPDLPQAINADEKRLRQIIINLLGNAIKFTETGGVNFTIQVLEAGAD 604

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
             ++  +V DTGVGMT  +L K   PF Q+   +  + EGTGLGL ++  + +    +  
Sbjct: 605 FNKIRFQVEDTGVGMTPEQLTKIFLPFEQV-GDKNKQAEGTGLGLAISCRIAELMGSQIQ 663

Query: 794 IFSTPAKGTLIEIIF 808
           + S    G+   +  
Sbjct: 664 VDSILGTGSKFWLDL 678


>gi|158333826|ref|YP_001514998.1| two-component hybrid sensor and regulator histidine kinase
           [Acaryochloris marina MBIC11017]
 gi|158304067|gb|ABW25684.1| two-component hybrid sensor and regulator histidine kinase,
           putative [Acaryochloris marina MBIC11017]
          Length = 653

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 79/258 (30%), Positives = 132/258 (51%), Gaps = 20/258 (7%)

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
            KL  AK++AE  +  KS FLA +SHE+RTPL AI+GFS+++            ++   +
Sbjct: 166 QKLVAAKEMAESANLAKSTFLANMSHELRTPLNAILGFSQLLSRD---STLTAAHLHKLS 222

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I+ SG  +L ++ND+L++SKIE+G++ L     +L   +    +L Q     K+I ++ 
Sbjct: 223 IINNSGEHLLALLNDILEMSKIEAGQITLDPTNFNLHHFLEGLYNLFQQKVFSKKINLKF 282

Query: 689 SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT---SNEE-------- 736
            ++  +P+ I AD++ ++Q+ +N+L NAI FT  G Q+ +         +          
Sbjct: 283 QYSKTVPQYIQADIKKLRQVLINLLGNAIKFTNEG-QVYLKVASRIYLDDAYSVNLQEPT 341

Query: 737 --VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE--GTGLGLPLAKAMVDANMGKF 792
             +   V DTG G++  + EK   PF Q    +Q      GTGLGL +++  V+   G+ 
Sbjct: 342 CLLTFSVEDTGPGVSEEDQEKIFHPFYQTEYGKQSHQGVHGTGLGLSISRQFVNLMGGEL 401

Query: 793 YIFSTPAKGTLIEIIFPL 810
            I S   KG       P+
Sbjct: 402 SISSQLNKGATFSFSIPV 419


>gi|47059697|gb|AAQ16277.2| chlamyopsin-5 [Chlamydomonas reinhardtii]
          Length = 1425

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 75/260 (28%), Positives = 129/260 (49%), Gaps = 5/260 (1%)

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
             I+    E+       +  +     K  F++ +SHE+RTPL  IIG S+ +     G +
Sbjct: 291 RLIAMRIVEEGNRIQVIQELKDLVEQKERFMSSMSHELRTPLNGIIGLSDALLVGSCGEI 350

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
            N + ++    I  SG  +L+++ND+LD + +  GK+ +  E V+L   V + I L Q  
Sbjct: 351 -NDQALKTITTIKTSGARLLNLINDILDAASMRKGKLTIKHEKVNLKRVVDDVIDLCQPL 409

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738
           A    + +      N+P +L D   + Q+  N++ N+  FT SG  I IS     + EV 
Sbjct: 410 AKR-GVKLVNDLRENVPFVLGDTGRIIQVFHNLIGNSCKFTHSG-NISISAAVKDD-EVE 466

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           + V DTG+G+   + ++    F Q+  S   +  GTGLGL L K +V+A+ G+  + S  
Sbjct: 467 VAVADTGIGIPEDKFDQIFLAFEQVDMSVTRKYGGTGLGLNLVKQLVEAHGGRISVKSRE 526

Query: 799 AKGTLIEIIFPLYDTSHPHD 818
            +GT       ++ + HP++
Sbjct: 527 NQGTTFYFTLKIH-SEHPNE 545


>gi|332519303|ref|ZP_08395770.1| PAS sensor protein [Lacinutrix algicola 5H-3-7-4]
 gi|332045151|gb|EGI81344.1| PAS sensor protein [Lacinutrix algicola 5H-3-7-4]
          Length = 1477

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 100/493 (20%), Positives = 205/493 (41%), Gaps = 33/493 (6%)

Query: 340  NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399
                 NP++  L   K+   I      ST+L   K    N IK                 
Sbjct: 875  EYIDVNPAYEKLFNLKAKAIIGKK--ASTVLPVIKNELTNWIKKYGETAMTGIDQTIEGY 932

Query: 400  LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459
            + ++    +  L   F P              G   +  + +  ++ ++    +L  I E
Sbjct: 933  IKSL---DKYFLVNVFSPKNGE--------FAGTITDFTELKSKEQALKKSEAELNRIQE 981

Query: 460  ATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL--RKPFTVFLEQNTPSVMNHYLTEIL 517
             T  G   ++ +   +     + K++G                  + +   +N  + +  
Sbjct: 982  LTVVGGWYLDLKTDKVYWTEQLFKMYGLDPNSTPPDYSKQRKLFTKQSWLNLNKAVEKTQ 1041

Query: 518  SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH----DISEWKQEKNKLSH 573
               +   +        ++ +   LR   + +       + +     DI++ K  + ++ +
Sbjct: 1042 KYGIPYVI--ELNLIKEDGEKGWLRAQGEAVKDEKGNIIALRGAAQDITKQKLIEEEIIN 1099

Query: 574  AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
            AKK AE  + HK+ FLA +SHEIRTP+  ++GFSE++K            ++Y   ID +
Sbjct: 1100 AKKAAESANLHKNYFLANMSHEIRTPMNGVLGFSELLKKDSLSKTD---RLKYLEIIDSN 1156

Query: 634  GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE---AISLVQLYANEKRILIRTSF 690
               +L++++D++DI+KIES ++ +++   ++ + +       + +++   +K I   T  
Sbjct: 1157 SKQLLNLIDDIIDIAKIESNELKINYTECNVPKLIQNLQITYNQLKIVKLKKNITFTTYI 1216

Query: 691  ANN--IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-VILRVRDTGVG 747
              N    +I+ D + ++Q+  N+L+N++ F+  G    IS   T   + +   V+D G+G
Sbjct: 1217 PENYKDLQIITDEQRLQQVISNLLNNSLKFSEKG---NISFGFTVIGKFLKFFVKDQGIG 1273

Query: 748  MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
            +   +  +  + F Q+      +  GTGLGL ++K +V    G   + S   KG++ E  
Sbjct: 1274 INKNKQLEIFERFKQLNYKSNAKYGGTGLGLSISKGIVTLLGGDITVTSQENKGSMFEFT 1333

Query: 808  FPLYDTSHPHDCI 820
             PL + +  H  I
Sbjct: 1334 IPLKEANTKHKSI 1346



 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/349 (11%), Positives = 100/349 (28%), Gaps = 29/349 (8%)

Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
            +  LK  K  L    E      E+  + N       +   +     +   E L   N  
Sbjct: 649 LESDLKIAKTELQNVVEELETSNEELQSSNEELMASNEELQSTNEELQSVNEELYTVNTE 708

Query: 310 SLSAYFDEGE--NLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGL 366
                 +     N     +D   I          +    P+   +   + +D        
Sbjct: 709 MQEKNKELTNLNNDITNLLDNTDIATLFLDTDLRIRKFTPALQDVFNLQEIDHGRPLSSF 768

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
           ++             + +++  S       +     ++   +N   +   PF  +++   
Sbjct: 769 TSNF-------EEQTRNLIIKDSKNVLDKLTVIEKQVKDKDDNFYLLRISPFITSDKVIN 821

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA----IINREGI-----ILST 477
                         +  + ++    ++   + E  ++       + ++ G       +  
Sbjct: 822 --GVVITLDNINKLKEIENELADTDLKYHKLFENLNEAFIHAKIVKDKNGNPTDWEYIDV 879

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLE--QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
           N A  KLF    + I+ K  +  L   +N  +       E     + QT+E       K 
Sbjct: 880 NPAYEKLFNLKAKAIIGKKASTVLPVIKNELTNWIKKYGETAMTGIDQTIEGYIKSLDK- 938

Query: 536 EKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
                + +     P +  ++ T+ D +E K ++  L  ++    +    
Sbjct: 939 --YFLVNV---FSPKNGEFAGTITDFTELKSKEQALKKSEAELNRIQEL 982



 Score = 44.2 bits (103), Expect = 0.091,   Method: Composition-based stats.
 Identities = 21/214 (9%), Positives = 68/214 (31%), Gaps = 4/214 (1%)

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
            +    + + +++   +         +    N   M      ++           +   +
Sbjct: 647 EDLESDLKIAKTELQNVVEELETSNEELQSSNEELMASNEELQSTNEELQSVNEELYTVN 706

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
            + +   +++      + ++L+ T      ++ +  I     A+  +F     D   +P 
Sbjct: 707 TEMQEKNKELTNLNNDITNLLDNTDIATLFLDTDLRIRKFTPALQDVFNLQEID-HGRPL 765

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYS 555
           +     N      + + +     L +          K++    LRI          +   
Sbjct: 766 SS-FTSNFEEQTRNLIIKDSKNVLDKLTVIEKQVKDKDDNFYLLRISPFITSDKVINGVV 824

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
           +T+ +I++ K+ +N+L+       K   + ++  
Sbjct: 825 ITLDNINKLKEIENELADTDLKYHKLFENLNEAF 858


>gi|312171320|emb|CBX79579.1| K07678 two-component system, NarL family, sensor histidine kinase
           BarA [Erwinia amylovora ATCC BAA-2158]
          Length = 924

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 87/334 (26%), Positives = 150/334 (44%), Gaps = 19/334 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           LF Y +   +  P    +               L   +   +             +++ +
Sbjct: 208 LFAYRLMRDVTGPIRNMVSTVDR-----IRRGQLDSRVEGYMLGELDVLKNGINSMAMSL 262

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 263 TAYHEEMQQNIDQATSDLRETLEQMEIQNVELDMAKKRAQEAARIKSEFLANMSHELRTP 322

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+     Q      N    +Y + I+RS N +L I+ND+LD SK+E+GK+ L  
Sbjct: 323 LNGVIGFT----RQTLKTTLNSTQRDYLHTIERSANNLLSIINDVLDFSKLEAGKLVLET 378

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P  L   + E + L+   A+EK + +  +  +++P   + D   ++QI +N+L NAI F
Sbjct: 379 IPFPLRATLDEVVVLLAQSAHEKGLELTLNIQSDVPDNAIGDPLRMQQIIVNLLGNAIKF 438

Query: 719 TPSGGQIIISTTHTS----NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           T SG  I I     +      E+ +++ DTG+G++  +  +  + F Q   S   R  GT
Sbjct: 439 TESG-NIDIRVEKRALSNNRMELEVQIHDTGIGISEKQQSQLFQAFRQADASISRRHGGT 497

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           GLGL + + +V+   G+    S   +G+      
Sbjct: 498 GLGLVITQKLVNEMGGEISFHSRLHRGSTFWFHI 531


>gi|295084438|emb|CBK65961.1| PAS domain S-box [Bacteroides xylanisolvens XB1A]
          Length = 610

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 112/524 (21%), Positives = 202/524 (38%), Gaps = 32/524 (6%)

Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSV 357
             E     +  S        E L        PI   +Y   G L   N   L +   +  
Sbjct: 99  ISEVQDGPDMASAYQALQYSERLLSNIFKYLPIGIELYDMDGVLVDLNDKELEMFHIEKK 158

Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
           +D+         +   ++ +         +          +     Q     ++ +    
Sbjct: 159 EDVLGINIFDNPIFPKEMKERLKKNEDADFTFRYDFSKVGSYYQNTQKQG--TIDLMTKV 216

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
               N   + +    I  +  +T +   K++        + +    G A  N    ILS 
Sbjct: 217 TTLYNSEHQPINYLLINADKTETTVAYNKIQEFEEFFELVGDYAKVGYAHFN----ILSG 272

Query: 478 NRAVSKLFGYPVEDILRKPFTVFL------EQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
           +    K +   V +    P +           +  +++  +L +     L   L K    
Sbjct: 273 HGYAQKSWYRNVGEADETPLSDIFGTYRHFHPDDRALLIRFLDDARK-GLTTQLSKEMRV 331

Query: 532 STKEEKLLSLRII--IKKLPFSSCYSLTMH---DISEWKQEKNKLSHAKKIAEKESSHKS 586
             ++       +   +KK          +    DI+E K+ +  L  A+  AE     KS
Sbjct: 332 LREDGTYTWTHVNLLVKKYAPQDRIIEIISINYDITELKRTEEMLVKARDKAEASDRLKS 391

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
            FLA +SHEIRTPL AI+GFS ++ +             Y + I  +  L+L+++ND++D
Sbjct: 392 AFLANMSHEIRTPLNAIVGFSSLLTSTESAA----EKELYNSLIGHNNKLLLNLINDVID 447

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706
           +SKIESG + L  + V+L E + E+++          + + T++  +   +  D   +KQ
Sbjct: 448 LSKIESGYLELRPDWVNLTELLDESVAEYAHQVPS-GVELLTNYPAHDSLVELDKLRIKQ 506

Query: 707 IALNILSNAIHFTPSGGQIIISTTHT-SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           I  N LSNA+  T +G    +   +   ++ V + V+DTG G+    LEK  + F ++ +
Sbjct: 507 ILSNFLSNALKNTTTG---HVEVFYEVDHQSVRIGVKDTGRGIPQNMLEKIFERFEKLDS 563

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
                 +G GLGLP+ K +V+   G+  + S    GT   I  P
Sbjct: 564 F----AQGAGLGLPICKLIVEKMNGRILVDSQLGIGTTFIIELP 603



 Score = 42.3 bits (98), Expect = 0.37,   Method: Composition-based stats.
 Identities = 10/103 (9%), Positives = 29/103 (28%)

Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450
                               +       E      E +       +  D     + ++  
Sbjct: 59  GVYQWPEVVYLLDTVKGSVWVRSKVCFQETDEGGNEIIYGISEVQDGPDMASAYQALQYS 118

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
              L +I +    GI + + +G+++  N    ++F    ++ +
Sbjct: 119 ERLLSNIFKYLPIGIELYDMDGVLVDLNDKELEMFHIEKKEDV 161


>gi|55377011|ref|YP_134861.1| HTR-like protein [Haloarcula marismortui ATCC 43049]
 gi|55229736|gb|AAV45155.1| HTR-like protein [Haloarcula marismortui ATCC 43049]
          Length = 726

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 91/629 (14%), Positives = 208/629 (33%), Gaps = 52/629 (8%)

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244
              +  ++     +  ++  + + E    + + ++ +    +        R + +  +  
Sbjct: 137 RSQQAVSERNRALQSYERMVNSMQEAACIYDAEDRFEIVNETIAEWYDTTRNELEGQTSR 196

Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
                + +        LL      L  + +                 L  +       + 
Sbjct: 197 LVPRIRAEGETDCYQELLDGTREKLSGEIETEFPGHGHAVVAYQLTPLVVD-GTIDGIVG 255

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN----LFYANPSFLLLTKYKSVDDI 360
                +     +         +D+ P+   +         L YAN  +  LT Y   + +
Sbjct: 256 VARDVTEQKERERELLRNKRAIDEAPVGVTITDPNQPDNPLIYANDHYRELTGYSLPELL 315

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
               G +  +   + +D   +  +         ++   R +                   
Sbjct: 316 ----GKNCRILQGENTDPEPVDALRDAIDAGEQVSVELRNYR---KDGTEFWNRVRIAPV 368

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
            +     +   G + +  + +  ++++E    +L ++ E + D I +++ +G I   N+ 
Sbjct: 369 RDDDGTVVNYVGFQQDTTERKRREKRLEETSSRLEALFENSPDMIDVLDADGTICEVNQR 428

Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
                GY   ++L +    F        +   L+     + R+      L   ++   +S
Sbjct: 429 FCAELGYDESEVLGRSIWEFDLMFDAEDVQTQLSGFSVDERRK---FEGLYERRDGSTMS 485

Query: 541 LRIIIKK--LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
           + + + +  L     +     DI+E K+ + +L    +  E+       F + VSH++R 
Sbjct: 486 VEVHLLRFNLEGEDRFLAISRDITERKEREQELEQQNEQLEQ-------FASVVSHDLRN 538

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
           PLT   G  E+++ +           E+ + ID +   +  +++DLL +++   G     
Sbjct: 539 PLTVARGQLELLREESDS--------EHIDAIDTAHQRMDTLIDDLLTLAR--DGASPAS 588

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718
              V L++ V      V   A      +RT        I AD   ++Q+  N++ NA+  
Sbjct: 589 PVVVDLEQFVQTCWQNVDTKAA----TLRTDIDR---PIRADESRLRQLFENLVRNAVEH 641

Query: 719 TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
              G  + ++    ++      V D G G+   E                   EGTG GL
Sbjct: 642 G--GDDVSVTVGELADG---FYVEDNGAGIPEPERGDVF------SAGYSTAVEGTGFGL 690

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEII 807
            + K + DA+     + S    G   E  
Sbjct: 691 SIVKQVADAHGWTVRVVSGADGGARFEFT 719



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/354 (8%), Positives = 86/354 (24%), Gaps = 25/354 (7%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLK-RQNTWYGKT 147
           DA    + ++E + +       ++ G     +   +  +   +   +LL   +    G+ 
Sbjct: 167 DAEDRFEIVNETIAEWYDTTRNELEGQT-SRLVPRIRAEGETDCYQELLDGTREKLSGEI 225

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                   +  V   L  L +   +    G    G+        +      R  +     
Sbjct: 226 ETEFPGHGHAVVAYQLTPLVV---DGTIDGI--VGVARDVTEQKERERELLRNKRAIDEA 280

Query: 208 HEIKKGHSSVEKEKYDIFSQ---QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
                     + +   I++    +    +   +    +         D    +       
Sbjct: 281 PVGVTITDPNQPDNPLIYANDHYRELTGYSLPELLGKNCRILQGENTDPEPVDALRDAID 340

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS----HRNHPSLSAYFDEGEN 320
               +  +   +  +  ++  +     ++++      Y+                +E  +
Sbjct: 341 AGEQVSVELRNYRKDGTEFWNRVRIAPVRDDDGTVVNYVGFQQDTTERKRREKRLEETSS 400

Query: 321 LTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL---- 375
                 +  P    V    G +   N  F     Y   + +  +     L+   +     
Sbjct: 401 RLEALFENSPDMIDVLDADGTICEVNQRFCAELGYDESEVLGRSIWEFDLMFDAEDVQTQ 460

Query: 376 -----SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
                 D       +  R D + ++    L       E+          +  + 
Sbjct: 461 LSGFSVDERRKFEGLYERRDGSTMSVEVHLLRFNLEGEDRFLAISRDITERKER 514



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/298 (9%), Positives = 77/298 (25%), Gaps = 16/298 (5%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKRQNTWYGKTTLWPIE 153
           L   ++   +  G    +++G     +  +    +P + + D +        +   +  +
Sbjct: 296 LIYANDHYRELTGYSLPELLGKNCRILQGENTDPEPVDALRDAIDAGEQVSVELRNYRKD 355

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
           GT  +  + +A  P+   +     + GF                +    +   L E    
Sbjct: 356 GTEFWNRVRIA--PVRDDDGTVVNYVGFQ--QDTTERKRREKRLEETSSRLEALFENSPD 411

Query: 214 HSSVEKEKYDIFSQQS---PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270
              V      I                  +      +    D    +      S +    
Sbjct: 412 MIDVLDADGTICEVNQRFCAELGYDESEVLGRSIWEFDLMFDAEDVQTQLSGFSVDERRK 471

Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330
            +  +   + +  + + +        ++ F  L+     +     ++      E +++  
Sbjct: 472 FEGLYERRDGSTMSVEVHLLRFNLEGEDRF--LAISRDITERKEREQELEQQNEQLEQFA 529

Query: 331 IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388
                     L  A     LL +    +       +  +  A +  D      + L R
Sbjct: 530 SVVSHDLRNPLTVARGQLELLREESDSE------HIDAIDTAHQRMDTLIDDLLTLAR 581



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 13/168 (7%), Positives = 52/168 (30%), Gaps = 1/168 (0%)

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII 474
                 A Q+     +     +   ++    +    +     ++ +  +   I + E   
Sbjct: 113 LRKEPGAKQYAGLANRISDAVDHSRSQQAVSERNRALQSYERMVNSMQEAACIYDAEDRF 172

Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
              N  +++ +     ++  +   +          + Y   +     + + E  T     
Sbjct: 173 EIVNETIAEWYDTTRNELEGQTSRLVPRIRAEGETDCYQELLDGTREKLSGEIETEFPGH 232

Query: 535 EEKLLSLRIIIKKLPFS-SCYSLTMHDISEWKQEKNKLSHAKKIAEKE 581
              +++ ++    +  +         D++E K+ + +L   K+  ++ 
Sbjct: 233 GHAVVAYQLTPLVVDGTIDGIVGVARDVTEQKERERELLRNKRAIDEA 280



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/255 (9%), Positives = 74/255 (29%), Gaps = 11/255 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +DA G + E+++     +G    +++G  + +   +   +                 +  
Sbjct: 416 LDADGTICEVNQRFCAELGYDESEVLGRSIWEFDLMFDAEDVQTQLSGFSVDERRKFEGL 475

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +G+ + V + L    +   +R         I        +     ++ +++     
Sbjct: 476 YERRDGSTMSVEVHLLRFNLEGEDRFL------AISRDITERKEREQELEQQNEQLEQFA 529

Query: 209 EIKKG----HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
            +         +V + + ++  ++S   H+   +      +        L  +     + 
Sbjct: 530 SVVSHDLRNPLTVARGQLELLREESDSEHIDAIDTAHQRMDTLIDDLLTLARDGASPASP 589

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
               L +       N++          +    +     L       +    + G +    
Sbjct: 590 VVVDLEQFVQTCWQNVDTKAATLR-TDIDRPIRADESRLRQLFENLVRNAVEHGGDDVSV 648

Query: 325 TVDKCPIPFFVYSHG 339
           TV +    F+V  +G
Sbjct: 649 TVGELADGFYVEDNG 663


>gi|27377871|ref|NP_769400.1| two-component oxygen-sensor histidine kinase [Bradyrhizobium
           japonicum USDA 110]
 gi|120207|sp|P23222|FIXL_BRAJA RecName: Full=Sensor protein fixL
 gi|39523|emb|CAA40143.1| fixL [Bradyrhizobium japonicum]
 gi|3021311|emb|CAA06276.1| FixL protein [Bradyrhizobium japonicum]
 gi|27351017|dbj|BAC48025.1| two-component oxygen-sensor histidine kinase [Bradyrhizobium
           japonicum USDA 110]
          Length = 505

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 77/460 (16%), Positives = 177/460 (38%), Gaps = 29/460 (6%)

Query: 369 LLDAPKLSDNNAIKPVMLYR--SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
           L  +    D+       + R          S R+       +    +        ++   
Sbjct: 61  LFLSRLEPDDRERVESAIKRVSERGGGFDVSFRVAGTSNAGQ---WIRARAGLIRDEAGT 117

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
               +GI  +  + +  +  +      L SIL    D + +I+  GII   + A  +LFG
Sbjct: 118 ARHLSGIFLDIDEEKQVEGALRTRETHLRSILHTIPDAMIVIDGHGIIQLFSTAAERLFG 177

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT--LEKITLGSTKEEKLLSLRII 544
           +   + + +   + + +   S  + Y++   +        + +I  G  ++     + + 
Sbjct: 178 WSELEAIGQNVNILMPEPDRSRHDSYISRYRTTSDPHIIGIGRIVTGKRRDGTTFPMHLS 237

Query: 545 IKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESS--HKSDFLARVSHEIRTPL 600
           I ++       ++  + D++E +Q + +L   +      S      +  + ++HE+  PL
Sbjct: 238 IGEMQSGGEPYFTGFVRDLTEHQQTQARLQELQSELVHVSRLSAMGEMASALAHELNQPL 297

Query: 601 TAIIGF---SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI-SKIESGKMN 656
            AI  +   S  +      P   P+     +           I+  L D  ++ ES    
Sbjct: 298 AAISNYMKGSRRLLAGSSDP-NTPKVESALDRAAEQALRAGQIIRRLRDFVARGES---- 352

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716
                 SL + + EA +L    A E+ + +R S       +LAD   ++Q+ +N+  NA+
Sbjct: 353 -EKRVESLSKLIEEAGALGLAGAREQNVQLRFSLDPGADLVLADRVQIQQVLVNLFRNAL 411

Query: 717 HFT--PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
                    +++++ T  +++ + + V DTG G  +  +    + F    ++      G 
Sbjct: 412 EAMAQSQRRELVVTNTPAADDMIEVEVSDTGSGFQDDVIPNLFQTFFTTKDT------GM 465

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           G+GL +++++++A+ G+ +  S  + G       P  D +
Sbjct: 466 GVGLSISRSIIEAHGGRMWAESNASGGATFRFTLPAADEN 505


>gi|323499018|ref|ZP_08103998.1| signal transduction histidine kinase [Vibrio sinaloensis DSM 21326]
 gi|323315853|gb|EGA68884.1| signal transduction histidine kinase [Vibrio sinaloensis DSM 21326]
          Length = 570

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 90/434 (20%), Positives = 174/434 (40%), Gaps = 62/434 (14%)

Query: 433 IEPEDVDTRINKRKMEIEVMQL----CSILEATSDGIAIINREG---------------- 472
            + +  +  I  ++ +    +L     +IL+A S      +++                 
Sbjct: 5   TQEQLNEALIELKQSQEREARLASENRAILDAISSITIASDKQQIFKELKSVLALYIDFS 64

Query: 473 ---------------IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
                           +LS+N     ++ +   D   +  +                 + 
Sbjct: 65  DFVVLTKNSDQTQYQTLLSSNPNFQGIY-WQDSDKYMRALSGECIIFFEPNKLDEFEHLS 123

Query: 518 SLDLRQTL------------EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
           SL                  + I L   ++    +L        F       + DI   +
Sbjct: 124 SLGNGPVFSALITGAKATITDSIILLIGRKAGQFTLDYRDTLSRFRPLVERALTDIERIE 183

Query: 566 QEKN-------KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
           Q +        +L  A+  AEK +  KS FLA +SHE+RTPL+A++G+ +V+       L
Sbjct: 184 QLQQLVDIKTQQLKLAQVKAEKANEAKSRFLAMMSHELRTPLSAVLGYIDVLLAD----L 239

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
                +E    ++ S  L+L ++ND+L++S+IESG+  + ++ V L+  +   +      
Sbjct: 240 KQENQLEILEKMESSAELLLVLINDILELSRIESGEFPIKYQWVRLNTELKFVLEHFYAL 299

Query: 679 ANEKRILIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737
           A+ K +    +   +    +  D   V QI  N++ NA+ FT +G ++ + T +  N+ +
Sbjct: 300 ADAKGLKFSVNIEFDESLSLWIDPARVMQIVFNLVGNALKFTHAG-EVCL-TANVINQHL 357

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
           ++ V+DTG+G+    L+     F Q  +S      GTGLGL ++K +V    G   + S 
Sbjct: 358 VITVKDTGIGIDKDRLDIVFSEFKQADDSITRSYGGTGLGLTISKHLVGLMSGNISVKSK 417

Query: 798 PAKGTLIEIIFPLY 811
             +G+   I  P+ 
Sbjct: 418 LGQGSTFRIELPIS 431


>gi|294506378|ref|YP_003570436.1| histidine kinase-response regulator hybrid protein [Salinibacter
            ruber M8]
 gi|294342706|emb|CBH23484.1| histidine kinase-response regulator hybrid protein [Salinibacter
            ruber M8]
          Length = 1346

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 67/231 (29%), Positives = 119/231 (51%), Gaps = 11/231 (4%)

Query: 585  KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
            KS FLA +SHEIRTP+  +IGF++++ +    P       ++ + I  SG  +L I++D+
Sbjct: 819  KSKFLANMSHEIRTPMNGVIGFADLLSDTDLTP----EQQQFVDAIQSSGTTLLSIIDDI 874

Query: 645  LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRS 703
            L+ SK+E+G+  L   P+ +   + EA+  +     EK I +       +P +   D   
Sbjct: 875  LNFSKLEAGETELEEAPIRVQTCIEEALDPLAAKVAEKGIELTYLIDPAVPSVIRGDRTR 934

Query: 704  VKQIALNILSNAIHFTPSGGQ-IIISTTHTSNE-----EVILRVRDTGVGMTNYELEKAM 757
            + QI LN+LSNA+ FT  G   + +    +        E+   VRDTG+G+   + ++  
Sbjct: 935  LHQILLNLLSNAVKFTEEGEVALRVRVASSPATPDGMYELHFSVRDTGIGIPKEKRDRLF 994

Query: 758  KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            + F Q+  S+     GTGLGL +++ + +A  G+ ++ S   +G+      
Sbjct: 995  ESFSQVDASKSREHGGTGLGLSISQQLTEAMGGEMWVESAVGEGSTFHFTI 1045


>gi|291568216|dbj|BAI90488.1| two-component hybrid histidine kinase [Arthrospira platensis NIES-39]
          Length = 1262

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 140/750 (18%), Positives = 254/750 (33%), Gaps = 108/750 (14%)

Query: 148  TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVD-------NDPRALGKRL 200
               P  G   Y+      LP         G R   +V +   D       N    +G  +
Sbjct: 314  RKIPFNGETQYI----KLLPFRDE----RGLRWLIVVVIPEADFMHNIQNNTRLTMGLSV 365

Query: 201  DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
                  +         + +   D+    +         KV +              +   
Sbjct: 366  IALAVAIAIGWITGEWITRPIIDLAKAANALSRGDWNQKVGNSCTQELRTLARSFKQMRG 425

Query: 261  LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
             L    S L E        + + T++          K      + R   +  A   E E 
Sbjct: 426  QLKLSYSQLQEYSYRLEQKVAERTQQL-------EQKVKIAEAAVRERKAAEAALRESEQ 478

Query: 321  LTPETVDKCPIPFFV--YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
                     P P  +     G     N SF L+T Y S + I        L         
Sbjct: 479  KFSTAFHAAPNPITISRLDDGIHLEVNESFCLVTGYNSEEIINRTLDELNLWV----YSE 534

Query: 379  NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
               + + +   +R          T   N E    +        N     +  +    +  
Sbjct: 535  QRSEMLGIIAKNRQVRNFELEFRT--KNGEIRSGLISADIINLNSQECLLTSSNDITDRR 592

Query: 439  DTR-------INKRKMEIEVMQLCS------ILEATSDGI---AIINREGIILSTN---- 478
                        +R +     +L S      I +  ++ I     ++R  I    +    
Sbjct: 593  RAEEALRRQFERERLLRQITEELRSSLDSQQIFQTAANRIGQTFAVDRCTIYTYLSSPTP 652

Query: 479  --RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI---------LSLDLRQTLEK 527
              +AV++        IL + +++        +++  +  I         L   L    + 
Sbjct: 653  QIKAVAEYLKCEYPPILNQQYSLENYPYIDRILSQDVAIITEDINRDNNLQGALEFCQQF 712

Query: 528  IT---------LGSTKEEKLLSLRIIIKKLPFSS------------CYSLTMHDISEWKQ 566
                         S     +   +    +                   +L   ++ E ++
Sbjct: 713  EIKSLLAIRTSYHSEPNGAIYLSQCSNSRTWTDEEIDLLESVAAKMGIALAQANLLEREK 772

Query: 567  EKN--------KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            ++          L  A++ A+  +  KS FLA +SHE+RTPL AI+GFS+++ +      
Sbjct: 773  QQRLKLATQNIALEEARRAADAANRAKSTFLANMSHELRTPLNAILGFSQLMADNPIFAE 832

Query: 619  GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
            G+         I+RSG  +L+++ND+LD+SKIE+GK+     P  L   +     + +L 
Sbjct: 833  GSQE----LAIINRSGEHLLELINDILDLSKIEAGKITFEIHPFDLHRLLETLEEMFKLK 888

Query: 679  ANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIST-------- 729
            A  + I++  +    +PR +L D + ++Q+ +N+L+NAI FT +G ++ + T        
Sbjct: 889  AANQDIILTINRPIYLPRYVLGDEKKLRQVLINLLANAIKFTIAG-EVTLYTKTLPTPKD 947

Query: 730  THTSNEEV--ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
              T +  V     V DTG G+++ E+      F Q    +  + EGTGLGLP+++  V  
Sbjct: 948  AETDSNTVLMQFMVEDTGPGISSEEINALFDAFVQTETGRYSQ-EGTGLGLPISRKFVKL 1006

Query: 788  NMGKFYIFSTPAKGTLIEIIFPL-YDTSHP 816
              G   + ST   G+      PL   T+ P
Sbjct: 1007 MGGDITVDSTRGVGSKFSFEIPLDLATAQP 1036



 Score = 37.7 bits (86), Expect = 8.1,   Method: Composition-based stats.
 Identities = 12/114 (10%), Positives = 38/114 (33%), Gaps = 4/114 (3%)

Query: 47  DSFEQSNFTDQNQESVSNTNYLDSENTF--VFDPIPRTVRFTWNIDAHGYLKEISEELPK 104
           +   +       +   +     +SE  F   F   P  +     +D  G   E++E    
Sbjct: 453 EQKVKIAEAAVRERKAAEAALRESEQKFSTAFHAAPNPIT-ISRLD-DGIHLEVNESFCL 510

Query: 105 TIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLY 158
             G  + ++I   L +++  ++ +  + +  ++ +          +  +   + 
Sbjct: 511 VTGYNSEEIINRTLDELNLWVYSEQRSEMLGIIAKNRQVRNFELEFRTKNGEIR 564


>gi|241204289|ref|YP_002975385.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240858179|gb|ACS55846.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 773

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 78/665 (11%), Positives = 228/665 (34%), Gaps = 44/665 (6%)

Query: 172 NREFSGFRGFGIVHVNR-----VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFS 226
            ++F     F  + ++R       +  R   +  +++     ++   H+   +    + +
Sbjct: 110 QKDFETLAAFAALRIDRMAVQADLDQARERARLAERELRLSWDMLPAHAWYTRPDGTLEA 169

Query: 227 QQSPPPHL--RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFH--TINLNQ 282
                       + ++S          D ++      + S    +P + +      N   
Sbjct: 170 VNREWSGYFGLTEKELSGFGYMRVFHPDDMQKVMDVWMRSLSQEVPGEVETRMMRANGEA 229

Query: 283 YTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP----IPFFVYSH 338
                    +++ + +   +             +     T   + +         + +  
Sbjct: 230 GVFLIRAVPVRDENGKVIRWYGINIDVEDLKNAEREIARTAAALAEGQKMSRTGSWSWRP 289

Query: 339 GNLFY-ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397
           G   +  +     +      +        + +L+     D  AI+P     +        
Sbjct: 290 GTDSFSWSDECARIFGMDPNE---RQPSFAAMLERVHPDDRTAIEPSD---ASPESSPGD 343

Query: 398 ARLH-TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
            +    I  +               +     +   G   +  ++++ + +++    +  +
Sbjct: 344 TQNEIRIVVSDGTITFGESRTHIVRDLAGTVVEYVGTVRDITESKLAQDRIQESERRYAA 403

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE--QNTPSVMNHYLT 514
            L +  D +   + +G ++  N    KL G+   +   +P     +    T  ++   ++
Sbjct: 404 TLSSIGDAVISTDDKGRLMFINPVAEKLTGWTQIEAAERPVGEVFQLIGETRELVGDPVS 463

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNK 570
           E+L+ ++   +       +K    L + +    +  S        L   D+++  +  + 
Sbjct: 464 EVLAREVDPLIGIQYALRSKAGSELIIDVSGAPIIDSRGEMKGAVLVFRDMTQRNETADA 523

Query: 571 LSHAKKIAEKESS--HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN-PRYIEYA 627
           L  +K+   + S      +    V+HE+  PL AI+  +    +   G   N     +  
Sbjct: 524 LRRSKEDLARMSRLTAIGELAVSVAHEMNQPLMAIVTNAAASMSWLEGKPSNIKEATQAI 583

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
            ++ R G+   ++++ +L +++         FEP+++   + E + L +    ++ +++ 
Sbjct: 584 GWVLRDGHRAGEVLSGILALAR----NSRPKFEPLNVRGVIEEVLQLTKSEIRQRGVVVE 639

Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHFT----PSGGQIIISTTHTSNEEVILRVRD 743
           T + +    +  D   ++Q+ +N++ N              + ++T   S+    + V D
Sbjct: 640 TVYDDAADAVTGDRIQLQQVLINLVMNGADAMTPLEDERRVLHVATKRLSDGLTQVSVSD 699

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
            GVG+     E+A + F     +      G G+GL + +++++A+ G  ++ +   KG+ 
Sbjct: 700 NGVGLDPDTAERAFEAFFTTKAT------GIGMGLSICRSIIEAHGGHIWVTTEKGKGST 753

Query: 804 IEIIF 808
                
Sbjct: 754 FTFTL 758



 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 46/384 (11%), Positives = 100/384 (26%), Gaps = 21/384 (5%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQNTWYG 145
           W     G L+ ++ E     G    ++ G     V     +     +    L ++     
Sbjct: 159 WYTRPDGTLEAVNREWSGYFGLTEKELSGFGYMRVFHPDDMQKVMDVWMRSLSQEVPGEV 218

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +T +    G      I   A+P+   N +    R +GI        +      R     +
Sbjct: 219 ETRMMRANGEAGVFLIR--AVPVRDENGKVI--RWYGINIDVEDLKNAEREIARTAAALA 274

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQS-------PPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
              ++ +  S   +   D FS            P+ R  +  + L   +      ++   
Sbjct: 275 EGQKMSRTGSWSWRPGTDSFSWSDECARIFGMDPNERQPSFAAMLERVHPDDRTAIEPSD 334

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF--- 315
               +S   +   +      +      +     +++ +    EY+      + S      
Sbjct: 335 ASPESSPGDT-QNEIRIVVSDGTITFGESRTHIVRDLAGTVVEYVGTVRDITESKLAQDR 393

Query: 316 -DEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
             E E     T+             G L + NP    LT +  ++  E   G    L   
Sbjct: 394 IQESERRYAATLSSIGDAVISTDDKGRLMFINPVAEKLTGWTQIEAAERPVGEVFQLIGE 453

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
                      +L R            + ++    + L +        +   E      +
Sbjct: 454 TRELVGDPVSEVLAR---EVDPLIGIQYALRSKAGSELIIDVSGAPIIDSRGEMKGAVLV 510

Query: 434 EPEDVDTRINKRKMEIEVMQLCSI 457
             +          +      L  +
Sbjct: 511 FRDMTQRNETADALRRSKEDLARM 534


>gi|182413985|ref|YP_001819051.1| integral membrane sensor hybrid histidine kinase [Opitutus terrae
            PB90-1]
 gi|177841199|gb|ACB75451.1| integral membrane sensor hybrid histidine kinase [Opitutus terrae
            PB90-1]
          Length = 1204

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 75/230 (32%), Positives = 121/230 (52%), Gaps = 14/230 (6%)

Query: 588  FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
            FLA +SHEIRTP+  +IG S ++ +   GP       EYA  I  S   +L I+ND+LD+
Sbjct: 824  FLANMSHEIRTPMNGVIGMSNLLVDTPLGP----EQQEYAQAIRHSAEALLAIINDILDV 879

Query: 648  SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQ 706
            SK+E+GK+ L      LD+ V +A+SL++  A  K + ++   +  +P  +L D   V+Q
Sbjct: 880  SKLEAGKLQLVPTEFRLDQLVEDAVSLLRPSATAKGLRLKAELSPELPPTLLGDANRVRQ 939

Query: 707  IALNILSNAIHFTPSGGQIIISTTHTSNE--------EVILRVRDTGVGMTNYELEKAMK 758
            + LN++ NA+ FT  GG + +                 V + V DTG+G+     E+  +
Sbjct: 940  VLLNLIGNAVKFTEHGG-VFVRVAPEPGATAHDSGPVSVRIEVADTGIGVPPEAAERLFQ 998

Query: 759  PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            PF Q   S   R  GTGLGL +++ +V+   G+  + S    G++   + 
Sbjct: 999  PFTQADESMTRRYGGTGLGLAISRQLVELMGGQIGVRSPETGGSVFWCVI 1048


>gi|288555853|ref|YP_003427788.1| PAS/PAC signal transduction histidine kinase [Bacillus pseudofirmus
           OF4]
 gi|288547013|gb|ADC50896.1| PAS/PAC signal transduction histidine kinase [Bacillus pseudofirmus
           OF4]
          Length = 605

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 88/528 (16%), Positives = 195/528 (36%), Gaps = 42/528 (7%)

Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANP 346
               +Q N +E    +   +       F   E    + ++        +   G   + N 
Sbjct: 116 ILTPIQMNEREYLLQVMQSHSEDADTAFQPNEAFARKILNGIKDGIITIKLDGTFLFVND 175

Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
               L                  +D P LS                 ++    +    + 
Sbjct: 176 KAERLLGMSGEQFNGRDFWSLLQMDQPGLSKKVY-----------ELLSGEESIQVEYYI 224

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
            E         +   +Q            +    +  +  +     +  S++E T + I+
Sbjct: 225 DEMKAWYDVRAYRIEDQ------VTLYFTDCSKRKEMEHDLRESERRYKSLVEHTPETIS 278

Query: 467 IINREGIILSTNRAVSKLF-GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
           + +    ++  N A  KLF     ++++ K      + +    +      +LS   + T 
Sbjct: 279 VHDGS-KLIYINPAGEKLFKAANRKELINKKIEALYKADDFKRIRENARLLLSGKKKMTT 337

Query: 526 E-KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
                      +  +     +        +   + D+SE  +  + +  + K++      
Sbjct: 338 SVFELQCLDGSKVDVEATSTVILFKGKPAFRTILKDVSERNRMDDLIRKSDKLSVVA--- 394

Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
                A V+HEIR PLTAI GF ++ + ++          ++ + +      V  I+ + 
Sbjct: 395 --QLAAGVAHEIRNPLTAIKGFLQLFQREK------EFNEQFLDLVMEELERVESIIYEY 446

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704
           L ++K         F+ + L   V++ ++LV+  +  K + I   +  N+P I    + +
Sbjct: 447 LTLAKP---NHESTFDNLHLQPLVNKVMTLVETQSIMKNVQIDFEY-ENVPPICGSEKQL 502

Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764
           KQ+ LN++ NAI      G+I+I   + + +++ +++ D G G+++  + +  +PF    
Sbjct: 503 KQVLLNLIKNAIEAVDVNGEIVIRLLNHAEDQICIQIEDNGCGISSERIARLGEPFY--- 559

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
                + +GTGLGL +   +++ + G   I S    GT I++I P+Y+
Sbjct: 560 ---STKEKGTGLGLMVCYKIIEHHQGILTIHSEEGAGTRIDVILPVYE 604


>gi|75910333|ref|YP_324629.1| periplasmic sensor hybrid histidine kinase [Anabaena variabilis
           ATCC 29413]
 gi|75704058|gb|ABA23734.1| Periplasmic Sensor Hybrid Histidine Kinase [Anabaena variabilis
           ATCC 29413]
          Length = 922

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 80/255 (31%), Positives = 138/255 (54%), Gaps = 14/255 (5%)

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
           + D ++      +L  AK  A+  +  KS+FLA +SHE+RTPL  I+G++++++      
Sbjct: 434 VRDRTQ------ELETAKIAADVANQAKSEFLASMSHELRTPLNGILGYAQILERSENIA 487

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
              P  +E  N I + G+ +L ++ND+LD+SKIE+GK+ LH         ++  + + ++
Sbjct: 488 ---PTVLEGINIIHQCGSHLLTLINDILDLSKIEAGKLELHNTDFDFSYFLTGVVEMCRI 544

Query: 678 YANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTS 733
            A +K I        ++P+ I AD + ++QI +N+L NAI FT +GG    I +     +
Sbjct: 545 RALQKGISFHYLPDPHLPQAINADEKRLRQIIINLLGNAIKFTETGGVNFTIQVLEVGAN 604

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
             ++  +V DTGVGMT  +L K   PF Q+   +  + EGTGLGL ++  M +   G+  
Sbjct: 605 FHKIRFQVEDTGVGMTPEQLTKIFLPFEQV-GDKSKQVEGTGLGLAISCKMAELMGGQIQ 663

Query: 794 IFSTPAKGTLIEIIF 808
           + S    G+   +  
Sbjct: 664 VDSILGTGSKFWLDL 678


>gi|330686045|gb|EGG97668.1| sensor protein SrrB [Staphylococcus epidermidis VCU121]
          Length = 498

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 69/398 (17%), Positives = 156/398 (39%), Gaps = 39/398 (9%)

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
                   ++  E          ++   +    +        S++ +  +G+  IN +  
Sbjct: 137 HITSVSTKDEIGELSRAFNNMSFEIQEHVE--ALSTSKNIRDSLINSMVEGVIGINEQKD 194

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
           I+ +N+   ++F               L+ N   ++ + + +  +    Q  E       
Sbjct: 195 IILSNKMADQVF-------------YTLDDNAVELIENQIEQTFNTKETQFQEIEANTRY 241

Query: 534 KEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
                + +   I+++           + D++                      K DF+A 
Sbjct: 242 ----YVIIMSYIERIQNDGRSGIVAIIRDMT--------------NEHNLDQMKKDFIAN 283

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           VSHE+RTP+  + G++E I +            E    +      +  +VN+LL++++++
Sbjct: 284 VSHELRTPIALLQGYTESIVDGVVTE--PDEIHESLAIVLDESKRLNRLVNELLNVARMD 341

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
           +  +++  E   + + +++     +  A +  + ++    N       D+  + Q+  N+
Sbjct: 342 AEGLSVEKETQPISDLLNKMRIKYRQQATDLELNMQFEVNNQQLW-NYDMDRMDQVLTNL 400

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           + NA  +T  G  I ++T    N   ILR+ DTG G+    L++    F ++  S++   
Sbjct: 401 IDNASRYTQPGDTISVTTD-EDNSYNILRITDTGTGIAPEHLQQVFDRFYKVDASRKRGK 459

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +GTGLGL + K +++ + G   + S   +GT   I  P
Sbjct: 460 QGTGLGLFICKMIIEEHGGIIEVESQVGEGTTFIIKLP 497


>gi|320156372|ref|YP_004188751.1| signal transduction histidine kinase [Vibrio vulnificus MO6-24/O]
 gi|319931684|gb|ADV86548.1| signal transduction histidine kinase [Vibrio vulnificus MO6-24/O]
          Length = 569

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 75/243 (30%), Positives = 134/243 (55%), Gaps = 7/243 (2%)

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
            +L+ A++ +E+ +  KS+FLA +SHE+RTPL +++G  +V+K           +I   +
Sbjct: 194 RELALAREESERANRAKSEFLAMMSHELRTPLNSVLGMLDVLKQSDMSAG----HINLLS 249

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
           +++ S  L+L I++D+LD+SKIESG+ +L  + +++++ V+  +S  QL A  K + I  
Sbjct: 250 HMESSAGLLLAIISDILDLSKIESGEFSLSPQWININDTVTFVVSQQQLVAATKGLNIEL 309

Query: 689 SFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747
           S   ++      D   + Q+  N++ NA+ FT  G QI I      N+E+ + V DTG+G
Sbjct: 310 SIELDDKRHYWLDPSRLSQVLFNLIGNAVKFTQQG-QIDIRVNLE-NDELSISVIDTGIG 367

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           +   ++      F Q  +S   +  GTGLGL + K +V+   G   + S   KG+   + 
Sbjct: 368 IEKDKISSLFTAFKQADSSITRKFGGTGLGLAITKHLVELMSGTVRVSSQFGKGSTFVVK 427

Query: 808 FPL 810
            P+
Sbjct: 428 IPV 430


>gi|266619626|ref|ZP_06112561.1| PAS domain protein [Clostridium hathewayi DSM 13479]
 gi|288868811|gb|EFD01110.1| PAS domain protein [Clostridium hathewayi DSM 13479]
          Length = 854

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 85/377 (22%), Positives = 166/377 (44%), Gaps = 16/377 (4%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRKPFTV 499
           R     +      L  ++E  ++   + N+ EG +   +  +  + G+  ++  +     
Sbjct: 327 RKRDADVYNRERMLNLLIERGNEVYMMYNKTEGCLEYVSPNLESVMGWSRQEAEQLFTEG 386

Query: 500 FLEQNTPSVM--NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT 557
                       + ++      D   ++ +    +      + L++    L     +   
Sbjct: 387 ENTDEEDIAGIKDEFIHWDGQGDFVGSIHQHRNRNNGNLSWIRLQVNPVYLSPEEVWIAN 446

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
           + D+++  +++  L  A   A   +  KS+FL+ +SH+IRTP+ AI+G + + +     P
Sbjct: 447 LSDMTKEWEQRENLEQALMAANSANIAKSNFLSNMSHDIRTPMNAILGMAAIAEQYAGDP 506

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
               + I     I  S   +L +++++LD+S+IESGKM L  +  SL   +   +S+ Q 
Sbjct: 507 ---EKVINCMKKISYSSRHLLALIDEILDMSRIESGKMLLENKIFSLSGMLEGIVSMFQE 563

Query: 678 YANEKRILIRTS---FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
               K++          ++   ++ D   + +I +NILSNAI +TP  GQI+ S T    
Sbjct: 564 QFKGKKLSFNMEKRSIKHD--SLIGDEFRLSRILVNILSNAIKYTPEQGQIVFSVTELQA 621

Query: 735 E-----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
                      ++D G GMT   L+    PF ++   +    +GTGLG+ +AK+M+D   
Sbjct: 622 GKEGYARYQFVIKDDGRGMTEEFLKTIFMPFTRMEEKEGSYTQGTGLGMAIAKSMLDLMG 681

Query: 790 GKFYIFSTPAKGTLIEI 806
           G   + ST  KG+   +
Sbjct: 682 GSINVESTLGKGSTFTV 698


>gi|288941471|ref|YP_003443711.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
 gi|288896843|gb|ADC62679.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
          Length = 904

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 80/258 (31%), Positives = 135/258 (52%), Gaps = 9/258 (3%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           + K + +++  A +  ++    KS F++  SHE+RTPL AI G+ ++I+  R G +    
Sbjct: 483 DLKNKIDEIETANQELQQLDQLKSKFISMASHELRTPLIAIQGYVDLIREGRGGEISAA- 541

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                + + R+   +  IV++LLDIS+IE  K+ L   PVSL + VSE     Q Y   +
Sbjct: 542 QRTMLDTVSRNATRLARIVSELLDISRIEENKLVLERVPVSLGQIVSEITEEQQPYLESR 601

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           R  +    A+ +PR+  D   + Q+ +N+L NAI +TP GG+I I      +  V L V 
Sbjct: 602 RHALTLEIADALPRVDGDPDRISQVVINLLGNAIKYTPDGGRIHIRVYPEPD-RVHLEVT 660

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRG-------EGTGLGLPLAKAMVDANMGKFYIF 795
           DTG+G+   ++ K  K F  + +  + R         GTGLGL + + +V A+ GK ++ 
Sbjct: 661 DTGIGIKPEDIGKLFKRFSTLGDVTKHRTGKNEFLAGGTGLGLSIVQGIVQAHAGKIWVD 720

Query: 796 STPAKGTLIEIIFPLYDT 813
           S   +G+   + +P+   
Sbjct: 721 SEYGRGSTFHVQWPIAHE 738


>gi|239908302|ref|YP_002955043.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239798168|dbj|BAH77157.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 1011

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 72/250 (28%), Positives = 126/250 (50%), Gaps = 8/250 (3%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E  +  + L  AK+ AE  S  KS FLA  SHEIRTP+  IIG   ++   R     + +
Sbjct: 353 EQSRMNDVLQKAKEAAESGSRAKSAFLANTSHEIRTPMNGIIGMCNLLLGTRL----SDK 408

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
            +E+   +  S N ++ ++ND+LD SKI++GK +L      L   ++  +  + +   +K
Sbjct: 409 QLEFVRTVHYSANTLMAVINDILDFSKIDAGKFSLEIIEFDLRRVLNMTLRPLTIACQQK 468

Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNE--EVI 738
            + +    + ++P  +  D   ++Q+  N++ NAI FT  G   + +     S+    + 
Sbjct: 469 GVELILVVSPHMPVFLRGDPARLQQVINNLVGNAIKFTERGEVAVCVDFLSESDGVAYIR 528

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
             V+DTG+GM+  + E   KPF Q+ +S   R  GTGLGL ++  +++   G+  + S  
Sbjct: 529 FSVKDTGIGMSPQQQEIIFKPFEQVDSSLTRRFGGTGLGLAISSHLIELMGGQLSVESNL 588

Query: 799 AKGTLIEIIF 808
            KG+      
Sbjct: 589 GKGSEFFFEI 598


>gi|293392823|ref|ZP_06637141.1| sensor histidine kinase/response regulator [Serratia odorifera DSM
           4582]
 gi|291424682|gb|EFE97893.1| sensor histidine kinase/response regulator [Serratia odorifera DSM
           4582]
          Length = 909

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 88/335 (26%), Positives = 149/335 (44%), Gaps = 17/335 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           LF Y +   +  P    +               L   +   +             +++ +
Sbjct: 192 LFAYRLMRDVTGPIRNMVNTVDR-----IRRGQLDSRVEGFMLGELHMLKNGINSMAMSL 246

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 247 TAYHEEMQQNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTP 306

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+     Q      +    +Y   I+RS N +L I+ND+LD SK+E+GK+ L  
Sbjct: 307 LNGVIGFT----RQTLKTDLSATQTDYLQTIERSANNLLTIINDVLDFSKLEAGKLVLEH 362

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P +L E + E I L+   A+EK + +     N++P  ++ D   ++Q+  N+L NA+ F
Sbjct: 363 IPFALRETLDEVIVLLAPSAHEKGLELTLDVHNDVPEQVIGDSLRLQQVITNLLGNAVKF 422

Query: 719 TPSGGQ-IIISTTHTSNEEVILRVR--DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T +G   I +   +    +V L V+  DTG+G++  +  +  + F Q   S   R  GTG
Sbjct: 423 TETGNIDIRVELRNRFERQVELEVQIHDTGIGISERQQSQLFQAFRQADASISRRHGGTG 482

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           LGL + + +V    G     S   +G+       L
Sbjct: 483 LGLVITQKLVKEMGGDICFHSQLNRGSTFWFHITL 517


>gi|153806756|ref|ZP_01959424.1| hypothetical protein BACCAC_01028 [Bacteroides caccae ATCC 43185]
 gi|149131433|gb|EDM22639.1| hypothetical protein BACCAC_01028 [Bacteroides caccae ATCC 43185]
          Length = 633

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 107/527 (20%), Positives = 202/527 (38%), Gaps = 38/527 (7%)

Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSV 357
             E     +           E L        P+   +Y+  G L   N   L L    S 
Sbjct: 121 IAEMQDGPDTAIACQALQRSERLLHNIYKNLPVGIELYNKEGVLVDLNDKELDLFHVDSK 180

Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ-----WNRENSLA 412
           +++        + + P   +    +   L  ++            +         E ++ 
Sbjct: 181 EELLGIN----IFENPVFPEEMKER---LRNNEDADFTFRYDFSKLGEYYSNNKAEGTID 233

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA---IIN 469
           +        ++    +    I  +  +T +   K++        I +    G A   I++
Sbjct: 234 LVTKVTTLYDENHNPVNYLLINADKTETTVAYNKIQEFEEFFELIGDYAKVGYAHFNILS 293

Query: 470 REGIIL-STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528
           ++G    S  + + +  G P+ +I+          +   ++  +  E+   +  +   KI
Sbjct: 294 KQGHAQKSWYKNIGEESGTPLSEIIGT--YKSFHPDDRDLILQFFEEVQKGNADKLSHKI 351

Query: 529 TLGSTKEEKLLSLRIII-----KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
            +      +     + +                  +DI++ KQ +  L + +  AE    
Sbjct: 352 RVFRE-NGECTWTHVNLFVRKYAPQDKVIELISINYDITDLKQIEEMLVNERDRAEASDR 410

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
            KS FLA +SHEIRTPL AI+GFS ++               Y + I  +  L+L+++ND
Sbjct: 411 LKSAFLANMSHEIRTPLNAIVGFSSLLA----SAENVVEKELYNSLISHNNELLLNLIND 466

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703
           ++D+SKIE+G + LH    +L E + E ++          + + TS+  +   +  D   
Sbjct: 467 IIDLSKIEAGYLELHQNWFNLTELLDECVAEYARLLPS-GVELLTSYPEHDALVELDKLR 525

Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHT-SNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
           +KQI  N LSNA+  T  G    +   +      V + V+DTG G+    LEK  + F +
Sbjct: 526 IKQILNNFLSNALKNTIRG---YVEVFYEIDKHCVRIGVKDTGCGIPQNMLEKIFERFEK 582

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           + +      +G GLGL + K++VD   G+  ++S    GT      P
Sbjct: 583 VDSF----AQGVGLGLSICKSIVDKMNGRIQVYSQLGLGTTFIAELP 625



 Score = 45.8 bits (107), Expect = 0.032,   Method: Composition-based stats.
 Identities = 47/331 (14%), Positives = 112/331 (33%), Gaps = 52/331 (15%)

Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465
                +       E  ++    +       +  DT I  + ++     L +I +    GI
Sbjct: 96  KGSVWMRSKICFREVDDKGNTIVYGIAEMQDGPDTAIACQALQRSERLLHNIYKNLPVGI 155

Query: 466 AIINREGIILSTNRAVSKLFGYPV-EDILRKPFT--VFLEQNTPSVMNHYLTEILSLDLR 522
            + N+EG+++  N     LF     E++L           +     + +      +    
Sbjct: 156 ELYNKEGVLVDLNDKELDLFHVDSKEELLGINIFENPVFPEEMKERLRNNEDADFTFRYD 215

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEW-----KQEKNK--- 570
            +       + K E  + L   +  L   +     Y L   D +E      K ++ +   
Sbjct: 216 FSKLGEYYSNNKAEGTIDLVTKVTTLYDENHNPVNYLLINADKTETTVAYNKIQEFEEFF 275

Query: 571 ----------LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
                      +H   ++++  + KS +   +  E  TPL+ IIG       + F P   
Sbjct: 276 ELIGDYAKVGYAHFNILSKQGHAQKSWY-KNIGEESGTPLSEIIGT-----YKSFHPDDR 329

Query: 621 PRYIEYANYIDR-SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
              +++   + + + + +   +       ++        +  V+L          V+ YA
Sbjct: 330 DLILQFFEEVQKGNADKLSHKI-------RVFRENGECTWTHVNL---------FVRKYA 373

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALN 710
            + +++   S   +I     DL+ ++++ +N
Sbjct: 374 PQDKVIELISINYDI----TDLKQIEEMLVN 400


>gi|224369677|ref|YP_002603841.1| sensory box histidine kinase and response regulator protein
           [Desulfobacterium autotrophicum HRM2]
 gi|223692394|gb|ACN15677.1| sensory box histidine kinase and response regulator protein
           [Desulfobacterium autotrophicum HRM2]
          Length = 772

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 77/422 (18%), Positives = 163/422 (38%), Gaps = 36/422 (8%)

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
                         N   E +    I  +    +  +++ E+   +  +I     + + +
Sbjct: 361 GTMEHWIVRTSPVKNAAGEIVAAMEINLDITHRKELEQRAELSEKKYHAIFNNIPNPVFV 420

Query: 468 INRE-GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
           ++ +   IL  N +V++++GY + DI+ KPF+   + + P+     +          ++ 
Sbjct: 421 LDNDSLTILDCNESVAEVYGYGMADIVGKPFSYLFDPSQPTQEIDDIVR------NTSII 474

Query: 527 KITLGSTKEEK--LLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
                     +   + + I   + P      +T  DI++  + + +   A K+A      
Sbjct: 475 NSVKHRRSNNRPMFVDIWISPSEYPGQKVLLVTTSDITQRLETETQFLQAAKLAT----- 529

Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKN--QRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
             +    V+HE+  PL+ I   S       ++   +           ID + N    I+N
Sbjct: 530 LGEMATGVAHELNQPLSVIKTASSFCIEKIRKNQEINPEILTTLLQKIDANVNRASKIIN 589

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702
            + D ++    K ++   PV + + +  A  +       + I +       +  ++ D  
Sbjct: 590 HMRDFAR----KSDIKLIPVDIVDILERAYEIFSQQLKVRGITVDWDITPPLAPVMTDPG 645

Query: 703 SVKQIALNILSNAIHFTPSGGQ-----------IIISTTHTSNEEVILRVRDTGVGMTNY 751
            ++Q+ +N+L NA     +  +           I I   +  +E+V + V DTG G+   
Sbjct: 646 RLEQVFINLLINARDAIEAKAEICHNDAGLKKKITIR-GYLLDEKVHVEVEDTGTGVPAD 704

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
             EK  +PF          G+GTGLGL ++  ++  + G   I  T  KG + ++I P Y
Sbjct: 705 VAEKIFQPFFTTK----EVGKGTGLGLSISYGIIKESSGLISIKETSEKGAVFQVILPAY 760

Query: 812 DT 813
            +
Sbjct: 761 RS 762


>gi|150009171|ref|YP_001303914.1| two-component system sensor histidine kinase [Parabacteroides
           distasonis ATCC 8503]
 gi|149937595|gb|ABR44292.1| two-component system sensor histidine kinase [Parabacteroides
           distasonis ATCC 8503]
          Length = 769

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 85/486 (17%), Positives = 173/486 (35%), Gaps = 42/486 (8%)

Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS-DRTCIAASARLHTIQWN 406
           +  +T       +         +   +          +L    D      +A        
Sbjct: 296 YAQVTVNTIEMILSGKDSKEIPIQTAETPRAYLNYQHLLLHQIDPGLYPPNATYFQEPPG 355

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM------QLCSILEA 460
                 +  I           +    +       +   ++++I         +   +L+A
Sbjct: 356 FLQKYKIHIISLLVILALLITIGILRVRLFIQKQKAKDKELQIARQAQDLNQKYQLVLKA 415

Query: 461 TSDGIAIINREGIILSTNRAVSK-----------LFGYPVEDILRKPFTVFLEQNTPSVM 509
           ++    I + +   L  N                LF    ++     F   +       M
Sbjct: 416 SNMMTWIWDVKEARLECNNIYLTQRSIRDKGIDGLFSMSADE-----FYSGIHPEDLEQM 470

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEE---KLLSLRIIIKKLPFSS---CYSLTMHDISE 563
              + ++++ +    +++              + +  I+ K          +     I++
Sbjct: 471 QDAINKLIAGESIS-IDEEIRYLDDTGLEYTWIEIFAIVGKTDPEGKSAYLTGGTTLINQ 529

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            K+ + +L   K+  E+ +  KS FLA +SHEIRTPL AI+GFS ++         +   
Sbjct: 530 RKKMEQELRD-KEKIEESNRLKSAFLANMSHEIRTPLNAIVGFSNLLAETCH----SEET 584

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            E+   I+ +  L+L +VND+LD+SKIE+G+M+  +   ++           Q    +  
Sbjct: 585 REFCEIIETNNELLLQLVNDILDLSKIEAGQMDFIYSEFNVSTLFRSLYQTFQSRVKD-G 643

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
           + +          I ++   + Q+  N L+NA  FT  G  I +      +  +   V+D
Sbjct: 644 VTLYCEIPEQDCVIYSEKNRLTQVITNFLTNACKFTFQGS-IRMGYKEREDG-LYFYVKD 701

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TG G+    L    + F +  +      +GTGLGL + + +++   GK  + S   KG+ 
Sbjct: 702 TGKGIERKNLPHVFERFAKFDSFI----QGTGLGLSICQTILENLHGKIGVESEEGKGST 757

Query: 804 IEIIFP 809
                P
Sbjct: 758 FWFTIP 763


>gi|91227910|ref|ZP_01262049.1| sensor protein TorS [Vibrio alginolyticus 12G01]
 gi|91188319|gb|EAS74616.1| sensor protein TorS [Vibrio alginolyticus 12G01]
          Length = 987

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 78/255 (30%), Positives = 127/255 (49%), Gaps = 9/255 (3%)

Query: 564 WKQEKNKLSHA--KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
            +  +  L+HA  +K AE+ S  KS FLA +SHEIRTP+  ++G + ++ +    P+   
Sbjct: 447 RRLNEEVLNHAKARKQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLIDSGLNPI--- 503

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
               YA  I+RSG  +L I+ND+LD SKIE+G + +      L + V +   L+   A E
Sbjct: 504 -QKRYAEIINRSGKTLLAILNDVLDYSKIEAGHLEIRHMGFDLHQMVEDTFQLMNSRAQE 562

Query: 682 KRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVIL 739
           K++L      +++ R    D+  + Q+  N++ NAI FT  G   I +S       +V+ 
Sbjct: 563 KKLLFSYHIESDVSRYWKGDVTRISQVLNNLVGNAIKFTDEGEIDIYVSLNPEDESQVLF 622

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V DTG+G+           F Q       +  GTGLGL ++K +++A  G   + S   
Sbjct: 623 EVSDTGIGIAKKYQRTLFDAFTQAEGGMS-QTGGTGLGLAISKRIIEAMGGVLEVDSEEG 681

Query: 800 KGTLIEIIFPLYDTS 814
            G+      PL ++ 
Sbjct: 682 NGSRFWFSIPLEESE 696


>gi|291568252|dbj|BAI90524.1| two-component hybrid histidine kinase [Arthrospira platensis
           NIES-39]
          Length = 1494

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 90/360 (25%), Positives = 156/360 (43%), Gaps = 42/360 (11%)

Query: 475 LSTNRAVSKLF----GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530
           +S N  +  L          D+  +P           +    +  + +    +    I L
Sbjct: 608 VSYNPYIEALLTSDRAIASTDVFSEPLLESSIPLCRRMALKSMLAVRTSYQDEPNGIIML 667

Query: 531 GSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKK-------------I 577
              ++ +    R  I+ L   +        I++ K  + ++   +               
Sbjct: 668 HQCQQMRE-WNRDEIEFLEDVASQVGIT--IAQAKLLEVEVKSHRALEAKNQALEEAKLA 724

Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
           AE  S  KS+FLA +SHEIRTP+ A+IG + ++ +    P       ++   I  SG+ +
Sbjct: 725 AEIASRAKSEFLATMSHEIRTPMNAVIGMTGLLLDMELTP----EQRDFVETIRTSGDAL 780

Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-R 696
           L I+ND+LD SKIESGK+ L  +P  L   + E + L+   A EK + +      + P  
Sbjct: 781 LTIINDILDFSKIESGKLELEKQPFKLRNCLEECLELLSGRAAEKGLELAYIIDPSTPKT 840

Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEE----------------VIL 739
           IL D+  ++Q+ +N++SNAI FT  G  I+ +  TH   ++                +  
Sbjct: 841 ILGDVTRLRQVLVNLVSNAIKFTSEGEVILAVKATHPDAKKDVKKFDDSDFTESHYVLQF 900

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            VRDTG+G+    +++  K F Q+  S      GTGLGL +++ +     GK ++ S   
Sbjct: 901 EVRDTGIGIPPDRIDRLFKAFSQVDASTTREYGGTGLGLAISQRLSQLMNGKMWVASWVN 960


>gi|307822100|ref|ZP_07652332.1| multi-sensor signal transduction histidine kinase [Methylobacter
           tundripaludum SV96]
 gi|307736666|gb|EFO07511.1| multi-sensor signal transduction histidine kinase [Methylobacter
           tundripaludum SV96]
          Length = 507

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 77/381 (20%), Positives = 164/381 (43%), Gaps = 23/381 (6%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           ++ ++ ++    +L SI  A+ +GI  I+   II+S N AV  +FGY  ++++       
Sbjct: 140 KVLEQTVQERTAELNSIFNASVEGIITIDMSDIIVSANAAVETIFGYKPKELIGCRINKI 199

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK--LPFSSCYSLTM 558
           +  +   + +  L   +    +        G  K   ++ L + I +  +  +  ++  +
Sbjct: 200 MPSSPRKMNDCSLPHTVKSVGQI---WEIEGIHKNGSVVPLDMSIAEFSIENTRYFTTIV 256

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSH--KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            D+S  K  + +           +      +  + ++HE+  PLTAI  +++   N    
Sbjct: 257 RDVSLRKHREQQDKKHLDELAHVTRLGLMGEMASGIAHELNQPLTAISTYTQTSINLINT 316

Query: 617 PLGNP-RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
              +P + +E  + I    +    I+  + +  K  +     H     ++  + E + L 
Sbjct: 317 DHPDPVKLLEILSKIHHQASRAGQIIQRMREFIKSHAK----HRSTADINSLIHECVDLC 372

Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN---AIHFTPSGGQ--IIISTT 730
            +  N+  + ++    NN+P I  D   ++Q+ +N++ N   A+   P   Q  I I + 
Sbjct: 373 IVELNQNGVKLKLELENNLPSINVDQIQIEQVLINLIRNSVDALKNLPEKRQRQITIHSR 432

Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
            T N  + +RV+D G G+   + +K   PF            G G+G+ +++++++A+ G
Sbjct: 433 VTLNNSIQVRVKDNGPGINEDQQKKISTPFYTTKAD------GMGMGISISRSLIEAHEG 486

Query: 791 KFYIFSTPAKGTLIEIIFPLY 811
             Y  S P KGT    I P+ 
Sbjct: 487 TLYFKSKPDKGTTFYFILPMA 507


>gi|87200018|ref|YP_497275.1| PAS/PAC sensor signal transduction histidine kinase
           [Novosphingobium aromaticivorans DSM 12444]
 gi|87135699|gb|ABD26441.1| PAS/PAC sensor signal transduction histidine kinase
           [Novosphingobium aromaticivorans DSM 12444]
          Length = 782

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 114/733 (15%), Positives = 235/733 (32%), Gaps = 54/733 (7%)

Query: 102 LPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY------GKTTLWPIEGT 155
                G  +    G    D  ++      + +    K    +       G +     +G 
Sbjct: 79  FEAMPGYLSELDAGDHGLD--EVELARLGDAVRRAQKTGTPFRMALTPRGGSRSLCAQGH 136

Query: 156 NLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF---SHLHEIKK 212
                +      +            F +          RA  ++    F   S L E   
Sbjct: 137 LADPQVSPGGAAL---------VWFFDVSESEEELVALRAETRKAKSDFAGLSGLIEAAP 187

Query: 213 GHSSVEKEKYDIFSQQSP---PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
                      +    S           ++V +         + L   +           
Sbjct: 188 LPMWFRGPDLRLRLVNSAYVAAVGAESADQVIAQGIELIEPVEGLSAAQVARQAHSRKVS 247

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
            E+    TI   +   +     L +    +   +       L   F        E +D  
Sbjct: 248 IERSLLATIKGQRRAVRVTDLPLGDE-GVAGYVVDIEEMEELIRQFRRFREAQREMLDTL 306

Query: 330 PIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTL--LDAPKLSDNNAIKPVML 386
                 +     L +AN  FL +        ++       L  +            P   
Sbjct: 307 SAGIAQFDEKRNLVFANQPFLRIFSVPQAWVVDTPPFDRVLDRMRDAGRLPEVRDFPEWR 366

Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
                  +A          +    L +   P              G      + R  + +
Sbjct: 367 RERQGWFLAREPIEEPWHLSDGTHLRVVGQPMPD-----------GGLLMIFEDRTEQLQ 415

Query: 447 MEIEVMQL----CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP-----F 497
           +      L     +  +   + +A+   +G +   NR  +  +G   E +   P      
Sbjct: 416 LSATRDTLLRTRTATFDNLFESLAVFAPDGRLQLWNRRFAADWGLDEEFLATHPRADVLL 475

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT 557
           +   +Q         + +++     +  ++    +  + + L+L      LP  +     
Sbjct: 476 SRIADQLKRPAQVGTVAQVIQGATLERKQRSGRLALADGRHLAL--AGVPLPDGNGLLTV 533

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
           + DI++ ++ +  L        +  + K+ F+A +S+E RTPLT+I GF+E++++   G 
Sbjct: 534 L-DITDSQKAEAALRERNAALVEADAVKTRFIANMSYEFRTPLTSIGGFAELLQSGIAGD 592

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
           L   +  EY   I  S   + + + ++LD+S+ E+G + L  EPV +   +++ ++    
Sbjct: 593 LT-EQQNEYVEAILTSVERLGEQIENVLDLSQSEAGTLPLAQEPVEIFPLLTDVVTERTE 651

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737
                 I +      +   +  D R +++    ++ NAI  TP GG+I++  +      +
Sbjct: 652 RLAGAGITLDLRGDRSAGMVTGDARRLRRAFGQLIDNAIAATPEGGRILVEASRKKGGAL 711

Query: 738 ILRVRDTGVGMTNYELEKAMKPF-GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
            + V D G GM    L +A+             R +  GLGLPL + +V+A+ G   + S
Sbjct: 712 QVVVSDNGRGMEPAVLARALDGLKVSADGKAVERRQ--GLGLPLVRQLVEAHGGNLELMS 769

Query: 797 TPAKGTLIEIIFP 809
            P  GT   ++ P
Sbjct: 770 EPGLGTSAIVMLP 782


>gi|149918425|ref|ZP_01906915.1| Multi-sensor Hybrid Histidine Kinase [Plesiocystis pacifica SIR-1]
 gi|149820725|gb|EDM80135.1| Multi-sensor Hybrid Histidine Kinase [Plesiocystis pacifica SIR-1]
          Length = 596

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 82/489 (16%), Positives = 173/489 (35%), Gaps = 56/489 (11%)

Query: 334 FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393
            + + G +   + +F  LT+   +      G     L           +  + + S    
Sbjct: 1   MLDAGGRILDMDSAFRSLTRAAPL-----PGRRLAQLLDWIPDTQPKAEVSVRHESIGGE 55

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
           +    R  +                      P                +  R+++I    
Sbjct: 56  LEVMIRPLSPHL------------------APVCFTVTVRRVRTRQETLLTRQLQIARQT 97

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
             + ++++   I  ++ E  +   NRA  ++FG+  ++IL +P+   +  +         
Sbjct: 98  FDAFVDSSPVTILTLDPEMRVTMWNRAAEQMFGWTADEILGRPY-PLVPTDEWKDFEKLY 156

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKN 569
             +L       +        K+   + LR+    +             + D++E  Q +N
Sbjct: 157 ERVLDGKGFTGV--EAWRKRKDGSPIRLRMHTAPMADGEGGVSGAMAILEDLTERDQLEN 214

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           ++ H++K+              ++H+    LT I+G  ++++ +        +  E  + 
Sbjct: 215 QVRHSQKM-----EAVGRLAGGIAHDFNNLLTVIMGMCDLMELEDELA---EQAFERVSE 266

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I R  +   ++V  L+  S+    +  +  +   L+E +  ++ ++    +E RI +   
Sbjct: 267 IRRVSDTARELVAQLMTFSR----RQVMRGQIFDLNEHIRNSVRMLGRLISE-RIELALC 321

Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH---------TSNEEVILR 740
              +   I  D   + QI +N++ NA    P GG+I + T+           S   V+L 
Sbjct: 322 LWESPLWIKTDPNQLDQILINLVVNASDAMPQGGRIELRTSQGRAPERLDSASEHHVLLE 381

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V DTG G+    L     PF     +      GTGLGL     +V+ + G   + S    
Sbjct: 382 VADTGTGIPEDVLPHIFDPFFTTKKAGS----GTGLGLANVYGIVEQSKGHVTVDSALGH 437

Query: 801 GTLIEIIFP 809
           GT   +  P
Sbjct: 438 GTCFCVFLP 446



 Score = 55.0 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/297 (10%), Positives = 78/297 (26%), Gaps = 15/297 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D    +   +    +  G  A +++G     V      D       +L  +  + G   
Sbjct: 112 LDPEMRVTMWNRAAEQMFGWTADEILGRPYPLVPTDEWKDFEKLYERVLDGKG-FTGVEA 170

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
            W        + + +   P+       SG     I+      +      +   K  +   
Sbjct: 171 -WRKRKDGSPIRLRMHTAPMADGEGGVSGAM--AILEDLTERDQLENQVRHSQKMEAVGR 227

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
                          I               +  L +  A +     +E   +  +    
Sbjct: 228 LAGGIAHDFNNLLTVIMGMCD----------LMELEDELAEQAFERVSEIRRVSDTAREL 277

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL-SAYFDEGENLTPETVD 327
           + +   F    + +         ++N+ +     +S R   +L            P  +D
Sbjct: 278 VAQLMTFSRRQVMRGQIFDLNEHIRNSVRMLGRLISERIELALCLWESPLWIKTDPNQLD 337

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
           +  I   V +   +       L  ++ ++ + ++ A     LL+            +
Sbjct: 338 QILINLVVNASDAMPQGGRIELRTSQGRAPERLDSASEHHVLLEVADTGTGIPEDVL 394


>gi|83816760|ref|YP_444628.1| histidine kinase DhkJ [Salinibacter ruber DSM 13855]
 gi|83758154|gb|ABC46267.1| histidine kinase DhkJ [Salinibacter ruber DSM 13855]
          Length = 1346

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 67/231 (29%), Positives = 119/231 (51%), Gaps = 11/231 (4%)

Query: 585  KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
            KS FLA +SHEIRTP+  +IGF++++ +    P       ++ + I  SG  +L I++D+
Sbjct: 819  KSKFLANMSHEIRTPMNGVIGFADLLSDTDLTP----EQQQFVDAIQSSGTTLLSIIDDI 874

Query: 645  LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI-LADLRS 703
            L+ SK+E+G+  L   P+ +   + EA+  +     EK I +       +P +   D   
Sbjct: 875  LNFSKLEAGETELEEAPIRVQTCIEEALDPLAAKVAEKGIELTYLIDPAVPSVIRGDRTR 934

Query: 704  VKQIALNILSNAIHFTPSGGQ-IIISTTHTSNE-----EVILRVRDTGVGMTNYELEKAM 757
            + QI LN+LSNA+ FT  G   + +    +        E+   VRDTG+G+   + ++  
Sbjct: 935  LHQILLNLLSNAVKFTEEGEVALRVRVASSPATPDGTYELHFSVRDTGIGIPKEKRDRLF 994

Query: 758  KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            + F Q+  S+     GTGLGL +++ + +A  G+ ++ S   +G+      
Sbjct: 995  ESFSQVDASKSREHGGTGLGLSISQQLTEAMGGEMWVESAVGEGSTFHFTI 1045


>gi|299541844|ref|ZP_07052167.1| two component system histidine kinase [Lysinibacillus fusiformis
           ZC1]
 gi|298725582|gb|EFI66223.1| two component system histidine kinase [Lysinibacillus fusiformis
           ZC1]
          Length = 929

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 73/260 (28%), Positives = 128/260 (49%), Gaps = 15/260 (5%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E ++ K +L  + +     S++KS+FLA +SHE+RTPL +I+  SE++       L +  
Sbjct: 483 ELEKAKKELEESAEQLILNSNYKSEFLANMSHELRTPLNSILILSEMLAENSQHNLTDEE 542

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             E+A  I  SG  +L ++ND+LD+SK+E+GK+++ F  V++ E   +        A +K
Sbjct: 543 -AEFAKVIHSSGEDLLALINDILDLSKVEAGKLDIIFNEVNMSEVPVQIEHTFAPVAMKK 601

Query: 683 RILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIIST------------ 729
            +    S A+++  +   D +  +QI  N+LSNA  FT  G  + +              
Sbjct: 602 NLAFHISKADHVVDVFYTDEKRFQQILKNLLSNAFKFTEQGS-VTLDINQLTPQQLTNNM 660

Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
              S + + + V DTG+G+   + +   + F Q   +   +  GTGLGL + K       
Sbjct: 661 QDISKDWLEITVSDTGIGIPKDKHQLIFESFQQADGATVRKYGGTGLGLSICKEFAKLLG 720

Query: 790 GKFYIFSTPAKGTLIEIIFP 809
           G   + ST  +G+   +  P
Sbjct: 721 GWITLQSTEGQGSSFTLTIP 740


>gi|298377088|ref|ZP_06987042.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_19]
 gi|298266072|gb|EFI07731.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_19]
          Length = 769

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 83/481 (17%), Positives = 171/481 (35%), Gaps = 32/481 (6%)

Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS-DRTCIAASARLHTIQWN 406
           +  +T       +         +   +          +L    D      +A        
Sbjct: 296 YAQVTVNTIEMILSGKDSKEIPIQTAETPRAYLNYQHLLLHQIDPGLYPPNATYFQEPPG 355

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM------QLCSILEA 460
                 +  I           +    +       +   ++++I         +   +L+A
Sbjct: 356 FLQKYKIHIISLLVILALLITIGILRVRLFIQKQKAKDKELQIARQAQDLNQKYQLVLKA 415

Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK------PFTVFLEQNTPSVMNHYLT 514
           ++    I + +   L  N           +    +       F   +       M   + 
Sbjct: 416 SNMMTWIWDVKEARLECNNIYLTQRSIRDKGTDGQFCMSADEFYSGIHPEDLEQMQDAIN 475

Query: 515 EILSLDLRQTLEKITLGSTKEE---KLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEK 568
           ++++ +    +++              + +  I+ K          +     I++ K+ +
Sbjct: 476 KLIAGESIS-IDEEIRYLDDTGLEYTWIEIFAIVGKTDPEGKPAYLTGGTTLINQRKKME 534

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
            +L   K+  E+ +  KS FLA +SHEIRTPL AI+GFS ++         +    E+  
Sbjct: 535 QELRD-KEKIEESNRLKSAFLANMSHEIRTPLNAIVGFSNLLAETCH----SEETREFCE 589

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I+ +  L+L +VND+LD+SKIE+G+M+  +   ++           Q    +  + +  
Sbjct: 590 IIETNNELLLQLVNDILDLSKIEAGQMDFIYSEFNVSTLFRSLYQTFQSRVKD-GVTLYC 648

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748
                   I ++   + Q+  N L+NA  FT  G  I +      +  +   V+DTG G+
Sbjct: 649 EIPEQDCVIYSEKNRLTQVITNFLTNACKFTFQGS-IRMGYKEREDG-LYFYVKDTGKGI 706

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
               L    + F +  +      +GTGLGL + + +++   GK  + S   KG+      
Sbjct: 707 ERKNLPHVFERFAKFDSFI----QGTGLGLSICQTILENLHGKIGVESEEGKGSTFWFTI 762

Query: 809 P 809
           P
Sbjct: 763 P 763


>gi|171321696|ref|ZP_02910615.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ambifaria
           MEX-5]
 gi|171093025|gb|EDT38255.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ambifaria
           MEX-5]
          Length = 528

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 72/371 (19%), Positives = 144/371 (38%), Gaps = 19/371 (5%)

Query: 448 EIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
                +  +++ A +D  + +++ +G + + N    ++ GY   +I+   F+ F      
Sbjct: 25  RFAEFRFETVVGAITDYAVFMLDPQGNVATWNAGAERIKGYRTTEIIGHHFSRFYPTEAI 84

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDIS 562
           +        +    +    E       K+  L    + I  +   +           D++
Sbjct: 85  AASRPAF-GLHEATVHGRFEDEGWRVRKDGSLFWASVTITAVRDHAGQLAGFIKITRDMT 143

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E K+            E  +   S F+A ++HE+R  L  +     V++     P   P 
Sbjct: 144 ERKRL--------AELEMSTHRLSVFIAMLAHELRNHLAPLRHSVSVLQT---LPDPAPM 192

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             +  + + R    +  +V+DLLD+ +I +GK+ L   P ++ + V   +  +Q     +
Sbjct: 193 LAQCRDAVHRQVGQLTRLVDDLLDVGRITAGKVELENAPATVRDVVCRGVESIQPKLAAR 252

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           +  +R         +  D   + Q+  N+  NA  F+P G +I +         V +RV 
Sbjct: 253 QQHLRVELPPEPVVVRGDAARLVQVLHNLFDNASKFSPPGARIDV-AADREGSTVAIRVT 311

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKG 801
           D GVG+    LE     F Q     +   +G GLGL + ++ V+ + G+    S  P  G
Sbjct: 312 DHGVGIAAGSLETIFDLFDQDGVPGRRPSDGFGLGLAICRSFVELHGGRISAESDGPGHG 371

Query: 802 TLIEIIFPLYD 812
               +  P+  
Sbjct: 372 ATFTVRLPVEH 382



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 38/349 (10%), Positives = 86/349 (24%), Gaps = 28/349 (8%)

Query: 53  NFTDQNQESVSNTNYLDSEN------TFVFDP--IPRTVRFTWNIDAHGYLKEISEELPK 104
           N  D   E        D+ +       F F+      T    + +D  G +   +    +
Sbjct: 2   NKDDAISELPPPLGPADARDLLHRFAEFRFETVVGAITDYAVFMLDPQGNVATWNAGAER 61

Query: 105 TIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR--QNTWYGKTTLWPIEGTNLYVPID 162
             G    ++IG           I  +     L +      +  +      +G+  +  + 
Sbjct: 62  IKGYRTTEIIGHHFSRFYPTEAIAASRPAFGLHEATVHGRFEDEGWRVRKDGSLFWASVT 121

Query: 163 LAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG----KRLDKKFSHLHEIKKGHSSVE 218
           + A  +     + +GF    I            L     +         HE++   + + 
Sbjct: 122 ITA--VRDHAGQLAGF--IKITRDMTERKRLAELEMSTHRLSVFIAMLAHELRNHLAPLR 177

Query: 219 KEKYDIFSQQSPPPHL-----RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE 273
                + +   P P L      +  +V  LT       DV +     +      +     
Sbjct: 178 HSVSVLQTLPDPAPMLAQCRDAVHRQVGQLTRLVDDLLDVGRITAGKVELENAPATVRDV 237

Query: 274 DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF 333
               +   Q         L+         +       +    +  +N +  +     I  
Sbjct: 238 VCRGVESIQPKLAARQQHLRVELPPEPVVVRGDAARLVQVLHNLFDNASKFSPPGARIDV 297

Query: 334 FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
                G+        + +T +           +  L D   +       
Sbjct: 298 AADREGSTV-----AIRVTDHGVGIAAGSLETIFDLFDQDGVPGRRPSD 341


>gi|289583646|ref|YP_003482056.1| PAS/PAC sensor signal transduction histidine kinase [Natrialba
           magadii ATCC 43099]
 gi|289533144|gb|ADD07494.1| PAS/PAC sensor signal transduction histidine kinase [Natrialba
           magadii ATCC 43099]
          Length = 792

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 96/776 (12%), Positives = 249/776 (32%), Gaps = 68/776 (8%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + +D  G    I++ +    G     + G  +  + +   +     +   ++ Q+   G
Sbjct: 36  IFQLDTEGRFIAINDSITDITGYTRDDLRGEHVSVLLEEADVT---RLEREIRTQHDASG 92

Query: 146 KTTLWPIEGTNLYVPID-LAALPIY--------SRNREFSGFRGFG-IVHVNRVDNDPRA 195
                 +  T   + I+  +  P+         + +    G  G    V  +   NDP  
Sbjct: 93  GPNTGNVPDTPFNLTIETASGNPVRCELRINLPADDGTTGGIVGVVRTVEAHDQTNDPLP 152

Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP---PPHLRMKNKVSSLTEYYAHKDD 252
                 +  S + +       V  E +D+            +     V         +  
Sbjct: 153 SVWETHEAISSVIDEADVGVFVLDEAFDVVWINETIEEYFGVDRTEIVGRDKATLIQETI 212

Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTI---------NLNQYTKKQYFGTLQN---NSKESF 300
             +            +  E   +            N  +   +     +++         
Sbjct: 213 RDRFADSETFVETALATYEDNTYVEQFECQILAADNREERWLEHRSRPIESGHYAGGRVE 272

Query: 301 EYLSHRNHPSLSAYFDEGENLTPE-------TVDKCPIPFFVY-SHGNLFYANPSFLLLT 352
            Y    +  +      E +    +        ++  P+   V    G++  AN     L 
Sbjct: 273 LYYDISDRKTAERVSQERKERLRQEHNLTEQILETVPVGIAVVNRDGSVARANERMTDLL 332

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
           ++        +          +  +   ++   + R   T      +   +         
Sbjct: 333 EFPPNS---KSYTTDQQEMYDENGEFLPVEERPVPRVFETGEPVIDQEIRLTKPDGQRQW 389

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVD----TRINKRKMEIEVMQLCS------ILEATS 462
           ++      A++  +         +  D    ++  KR ++    +L +      +LE+ +
Sbjct: 390 LSVNARPIADEQGDPKRVLETATDITDLKELSKRRKRALDEREKELAAMQLATDLLESRA 449

Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT---PSVMNHYLTEILSL 519
           + +     +  I      + + F +P +   R      +          +   +T   S 
Sbjct: 450 EPV-----DQFIDEFVTILPQFFKHPEQTDARVSIDDVVATTGTGGDEQIADRITAHTST 504

Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579
                +    +    E    S+      L        T+  + +   ++ +        +
Sbjct: 505 INGTPIAISVVHQEAETTEKSITRTEGFLQEEQELIETLALLLKLHLDRQEYIDG---LQ 561

Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639
           + +     F    SH+++ PL  +  + + +  QR+    +    E+  Y       +  
Sbjct: 562 RSNKRLEQFAYAASHDLQEPLRMVSSYLQ-LIEQRYADKLDADGEEFLEYAVDGAERMRA 620

Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA 699
           +++ LL  S++ES      FE V LD+ +++ ++ ++L  +E    I +     +P +  
Sbjct: 621 MIDGLLQYSRVESRGEP--FEAVDLDDVLADVLNDLRLSIDEHDANITSDL---LPTVKG 675

Query: 700 DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKP 759
           D   ++Q+  N++ NA+ ++      +  T   + +   + V D G+G+   + ++  + 
Sbjct: 676 DASQLRQVFQNLIDNALEYSGDDPPRVHVTAERTGDRWQVTVSDEGIGIDPEDADRVFEV 735

Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
           F ++    +    GTG+GL L + +++ + G+  + S P +GT      P+ +   
Sbjct: 736 FQRLH--TRDEHAGTGIGLALCRRIIERHGGEIQVESEPGEGTAFSFTLPVLEDEE 789



 Score = 51.2 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/156 (12%), Positives = 50/156 (32%), Gaps = 13/156 (8%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           R     ++  +    ++L   ++GI  ++ EG  ++ N +++ + GY  +D+  +  +V 
Sbjct: 16  RDETEALQRSL----ALLNNVAEGIFQLDTEGRFIAINDSITDITGYTRDDLRGEHVSVL 71

Query: 501 LEQNTPSVMNHYLTEILS------LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--- 551
           LE+   + +   +                         T     +   + I         
Sbjct: 72  LEEADVTRLEREIRTQHDASGGPNTGNVPDTPFNLTIETASGNPVRCELRINLPADDGTT 131

Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
                 +  +    Q  + L    +  E  SS   +
Sbjct: 132 GGIVGVVRTVEAHDQTNDPLPSVWETHEAISSVIDE 167


>gi|322420329|ref|YP_004199552.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
 gi|320126716|gb|ADW14276.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
          Length = 896

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 93/529 (17%), Positives = 174/529 (32%), Gaps = 70/529 (13%)

Query: 313 AYFDEGENLTPETVDKCPIPFFVYSHG--NLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
           A  +  E       +       V       +  ANP+      +   +      G   L 
Sbjct: 269 ADLNRSEERYRTLFENSQAVMLVIDPEYAAVVDANPAAEAWYGWTREELCRKNMGEVCLS 328

Query: 371 DAPKLSDNNAIK---PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
                 +    +        R+D +          +  +                     
Sbjct: 329 RPDPAGEPGWKQGHFQGRHLRADGSQRDVELFGGEVARSGRTLFYC-------------- 374

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSI-------LEATSDGIAIINREGIILSTNRA 480
                I  +  D ++ + ++     +   +       L+A  D + +++RE  +   NRA
Sbjct: 375 -----IVQDVTDKKLAEGELLKSEAEFRRLSGEFNGLLDAIPDDLMLLDRELRLHWVNRA 429

Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
            ++  G  +E+++ +         +    +  + E  +        + T+    E +  S
Sbjct: 430 GAESAGRSMEEMVGRHCYELCYGKSTPCESCSVLETFATGRPA---QQTVTREPEGR--S 484

Query: 541 LRIIIKKLPFSSCYSLTM----HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
             I    L         +     DI+E  + + +  HA+K+              V+H+ 
Sbjct: 485 WEIRTVPLKGEQGEIARVIQLKRDITEQTRLEQQYLHAQKM-----ESIGTLAGGVAHDF 539

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
              LT I G  + +  +R GP  +         I  +      +  +LL  S+    K  
Sbjct: 540 NNILTVIGGLGQ-LTMERMGP--DDPLRANMAGIMEATERASYLTRELLLFSR----KQK 592

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716
               PV L++ V   +         + I +R         ILAD   ++Q+ +N+  NA 
Sbjct: 593 SERRPVDLNQVVER-MRSFLHRIIGEDITLRQLRLGVPLPILADSNHLQQVLMNLAVNAR 651

Query: 717 HFTPSGGQIIISTTH-------------TSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
              P GG+ ++ T                     +LRV DTG GM    L +  +PF   
Sbjct: 652 DAMPEGGEFLLRTDRVQLCEEPAADGYRRPGAYALLRVSDTGTGMDQATLARIFEPFFTT 711

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
             +    G+GTGLGL +   ++  + G   + S P KG+   I  PL D
Sbjct: 712 KET----GKGTGLGLSVVYGIIKQHEGFVTVQSEPGKGSTFSIYLPLND 756


>gi|2439990|gb|AAB71342.1| two component sensor regulator; ORF2 [Pseudomonas tolaasii]
          Length = 706

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 78/243 (32%), Positives = 143/243 (58%), Gaps = 8/243 (3%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  A+K A + S  KS+FLA +SHEIRTPL  I+GF+ +++     P    R+++Y   
Sbjct: 66  ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSELSP----RHVDYLGT 121

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I++S + +L I+N++LD SKIE+GK+ L   P +L + + + ++++   A+ K++ + + 
Sbjct: 122 IEKSADNLLGIINEILDFSKIEAGKLVLDSVPFNLRDLLQDTLTILAPAAHAKQLELVSL 181

Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQI---IISTTHTSNEEVILRVRDTG 745
              + P  ++ D   +KQI  N++SNAI FT  G  +   ++      + ++ + V+DTG
Sbjct: 182 VYRDTPLAVVGDPLRLKQILTNLISNAIKFTREGTIVARAMVEDEEEDSVQLRISVQDTG 241

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G++N ++    + F Q  NS   +  GTGLGL ++K +++   G+  + STP +G+   
Sbjct: 242 IGLSNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFW 301

Query: 806 IIF 808
           I  
Sbjct: 302 ISL 304


>gi|78358757|ref|YP_390206.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78221162|gb|ABB40511.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 826

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 101/668 (15%), Positives = 202/668 (30%), Gaps = 53/668 (7%)

Query: 163 LAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKY 222
           L  L +    R F+G  G  ++   R   +             H+H   K          
Sbjct: 190 LTRLALSESTRRFTGADGEPLLGSLRPIMNEEGCS----GGPCHVHSADKQVLGALDVVM 245

Query: 223 DIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQ 282
            +            +  V +    +      +       +T   S L E           
Sbjct: 246 RL-GPAQLDFARFQQGMVGATAVVFLLSASAIVLLLRRFITQPVSRLKENTRRIGRGEPV 304

Query: 283 YTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NL 341
                           + + ++            +         ++ P    V      L
Sbjct: 305 LITDAGQHDEIGELAGAVQSMADDIRQKQEELLRQ-RREYQALFEQVPCSITVQDREYRL 363

Query: 342 FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401
              N  F                              +      + R+  T  +  +  +
Sbjct: 364 LQFNREFAERFHPLP----------GAFCYQAYKGRTDPCPNCPVERTFATGRSHCSEEY 413

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
               +   +  +        ++  +      +  +    +  + ++     +  +I    
Sbjct: 414 RTNPDGSRTHWLVHT-SPVVDENGQVTAAMEMSIDVSALKKAEDRLRRSEQKYHAIFNNI 472

Query: 462 SDGIAIINRE-GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520
            + + +++ +   I+  N  V  L+GY    +    F     +         L     L 
Sbjct: 473 PNAVFVLDAQTLDIVDCNHTVETLYGYERSQLTGMSFLDMFPEEERRRYASQLKAFTVLP 532

Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM--HDISEWKQEKNKLSHAKKIA 578
                        K+  +L + I++    +     L +   D++E  + + KL  A K+A
Sbjct: 533 RA-------RNHRKDGSMLYVDIMLSPAEYHERTVLLVAASDVTERLETEQKLIQAGKMA 585

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ--RFGPLGNPRYIEYANYIDRSGNL 636
                   +    V+HE+  PLT I   S  I  +  R  P+        A  ID   + 
Sbjct: 586 T-----LGEMATGVAHELNQPLTVIKTASSFIMRKIHRGEPVAPDVLETMAREIDSHVDR 640

Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696
              I+N + D  +    + ++  EPV+L+  +  +        + ++I +    A  +P 
Sbjct: 641 ASGIINHMRDFGR----QSDITLEPVNLNAVLQSSCEFFARQLSLRQIEVDWQLAEVLPP 696

Query: 697 ILADLRSVKQIALNILSNAIHFTPSGG--------QIIISTTHTSNEEVILRVRDTGVGM 748
           ++A    ++Q+  N+L NA                +I + TT    E V+    DTG G+
Sbjct: 697 VMAMPNRLEQVFTNMLLNARDAIEERSERDPNAPRRITVRTTVEDREVVVRV-CDTGKGI 755

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
               L K  +PF    +     G+GTGLGL ++  +V    G     + P  G    + F
Sbjct: 756 PRSLLNKIFEPFFTTKS----VGKGTGLGLSISYGLVKDFGGSIQAANMPEGGACFILRF 811

Query: 809 PLYDTSHP 816
           P   +S P
Sbjct: 812 P-STSSLP 818



 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/380 (7%), Positives = 88/380 (23%), Gaps = 28/380 (7%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMI-----GMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144
           D    L + + E  +               G             PN  +        +  
Sbjct: 358 DREYRLLQFNREFAERFHPLPGAFCYQAYKGRT--------DPCPNCPVERTFATGRSHC 409

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            +      +G+  +  +  +  P+   N + +      I              +R ++K+
Sbjct: 410 SEEYRTNPDGSRTHWLVHTS--PVVDENGQVTAAMEMSI--DVSALKKAEDRLRRSEQKY 465

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
             +         V   +       +         + S LT          +  +      
Sbjct: 466 HAIFNNIPNAVFVLDAQTLDIVDCNHTVETLYGYERSQLTGMSFLDMFPEEERRRYASQL 525

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
           +  ++  +   H  + +           + + +      +      L       +     
Sbjct: 526 KAFTVLPRARNHRKDGSMLYVDIMLSPAEYHERTVLLVAASDVTERLETEQKLIQAGKMA 585

Query: 325 TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
           T+ +         +  L     +   + +     +      L T+        + A   +
Sbjct: 586 TLGEMATGVAHELNQPLTVIKTASSFIMRKIHRGEPVAPDVLETMAREIDSHVDRASGII 645

Query: 385 MLYRSDRTCIAASARLHTIQWNREN-----SLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
              R        +     +    ++     +  ++    E   Q  E +P     P  ++
Sbjct: 646 NHMRDFGRQSDITLEPVNLNAVLQSSCEFFARQLSLRQIEVDWQLAEVLPPVMAMPNRLE 705

Query: 440 TRI------NKRKMEIEVMQ 453
                     +  +E    +
Sbjct: 706 QVFTNMLLNARDAIEERSER 725


>gi|299149224|ref|ZP_07042284.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
 gi|298512658|gb|EFI36547.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
          Length = 541

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 97/510 (19%), Positives = 175/510 (34%), Gaps = 49/510 (9%)

Query: 324 ETVDKCPIPFFVYS---HGNLFYANPSFLLLTKYKSVDDIEIAG----------GLSTLL 370
           + +D  P P FV         +Y N      +   S + I                  + 
Sbjct: 56  DILDNLPFPIFVKDITNDFRYYYWNKESAAQSGISSEEAIGHTDYEIYGEERGEKYRHID 115

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
                +     K       D       A    I W  E    +                 
Sbjct: 116 KELIQAGKVYRKEEKYTTPDGITHDTIAVKSIISWEGEKKWLLATR-------------- 161

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLC-------SILEATSDGIAIINREGIILSTNRAVSK 483
                +    +  +R++     +L          L++   G+  I++   +         
Sbjct: 162 ----WDITQLKNYERELVAAKEELEKALKKQKLALKSIDFGLIYIDKNYRVQWEETRQIA 217

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
                   I  K                   + +                 E     +  
Sbjct: 218 SLVKGRRYIPGKICYQTSALRNEPCGQCAFKKAIEQGKIIRHTIRVDNVDFEVTATPVFG 277

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
             K+            +I+E  +    L  AK+ AE+ +  KS FLA +SHEIRTPL AI
Sbjct: 278 DEKETEIIGGLLR-FENITEKLKMDKMLQEAKEKAEESNRLKSAFLANMSHEIRTPLNAI 336

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +GFSE++              E+   I  +  L+L +++D+LD+SKIE+G M   F    
Sbjct: 337 VGFSEMVCQTEEEEE----RKEFVKIISSNNILLLQLIDDILDLSKIEAGTMEFTFAQTD 392

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
           ++E +      +Q   +   I I  +   +   +  D   + Q+ +N  +NA+ FTP G 
Sbjct: 393 INELMEGICRQMQEKNSSPDIQILFTEKADQCMMYTDRIRLSQVIINFTNNALKFTPKGS 452

Query: 724 QIIISTTHTS-NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
            I +        +E+   V+DTG+G+   +++K  + F ++ +      +GTGLGL + +
Sbjct: 453 -IEMGYRIEEAKDEIYFYVKDTGIGIPADKIDKVFERFVKLNSFI----KGTGLGLAICR 507

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
            +V+   G   + S   +G+      P  +
Sbjct: 508 VIVERLGGVIGVESKEGEGSRFWFRIPRSE 537


>gi|295106963|emb|CBL04506.1| Signal transduction histidine kinase [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 748

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 70/258 (27%), Positives = 121/258 (46%), Gaps = 13/258 (5%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E  + +         A++ S  K++FL+R+SHEIRTP+  I+G + +          + +
Sbjct: 339 EKDRAERAF----AEAQQASLAKTEFLSRMSHEIRTPMNGIMGMTAIALESIG---DDGK 391

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                  +  S   +L ++ND+LD+SKIESGK+ +  EP  L   +    ++ +  A+E+
Sbjct: 392 VRTCLEKVTLSSEHLLSLINDILDMSKIESGKVEIKNEPFDLSTFIGSLAAVFRTQASER 451

Query: 683 RILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----- 736
            +   T     +P  ++ D   + Q+  N++ NA  FTP GG + +     ++ E     
Sbjct: 452 NVAFDTVVEGEVPGHVVGDPLRLNQVVYNLMGNAFKFTPEGGSVTLRIERLADAEDGCVW 511

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           +   V DTG G+    L+K    F Q   S   +  GTGLGL + K  V+   G+  + S
Sbjct: 512 LRFAVDDTGCGIEPEHLDKIFASFEQGDASVARKHGGTGLGLAITKRFVELMGGRIRVAS 571

Query: 797 TPAKGTLIEIIFPLYDTS 814
               G+   +  PL   +
Sbjct: 572 VVGHGSSFAVDVPLGRAT 589


>gi|257877615|ref|ZP_05657268.1| histidine kinase [Enterococcus casseliflavus EC20]
 gi|257811781|gb|EEV40601.1| histidine kinase [Enterococcus casseliflavus EC20]
          Length = 573

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 75/368 (20%), Positives = 157/368 (42%), Gaps = 29/368 (7%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           R       QL  +L     G+ IIN E  +L  N  + +  G      L +PFT  +   
Sbjct: 234 RAYAASEQQLYGLLSELMIGVFIINEENQLLLLNPTMQEQLGMETAPTLPQPFTEVIHDT 293

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564
               + +        D        T  S +  K+L + +   +    +      +D++  
Sbjct: 294 QLIQLIYQFN-----DETPIFHAETTLSGERSKVLDVTL---RSFQENQLIGISYDLTRI 345

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           +Q +                + DF+  VSHE++TP+T++IGF+E + +            
Sbjct: 346 RQLE--------------KMQKDFVGNVSHELKTPVTSLIGFTETLLDG--AKEDPETLQ 389

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
            +   I +    + +++ D++ +S+ +S       +P++  E + + +      A +K++
Sbjct: 390 TFLEIIQKDAYRLKNLIQDIIQLSQ-DSDSFQYVDQPINFSELLQQVVQTYGPAAAKKQL 448

Query: 685 LIRTSFANNIPRILADLRSVKQ-IALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
             +       P IL+  + + Q I  N++ NA+ ++  GG I +S +   +++++ +V+D
Sbjct: 449 TFQFEGPE--PFILSTKKELLQPIVKNLVENAVTYSKPGGVITLSYS-EQDDQLLFQVQD 505

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
            G+G+   + E+  + F ++  ++     GTGLGL + K       G   + S P  G+ 
Sbjct: 506 QGIGIDEEDQERIFERFYRVDKARARNSGGTGLGLAIVKDYTKLLGGSIKVDSFPKIGST 565

Query: 804 IEIIFPLY 811
             +  PL+
Sbjct: 566 FTVTLPLH 573


>gi|218780671|ref|YP_002431989.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218762055|gb|ACL04521.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 781

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 95/592 (16%), Positives = 203/592 (34%), Gaps = 60/592 (10%)

Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
           ++ +  + +   ++ S +  L  +E     N +  T       L N   E    L     
Sbjct: 79  NQAEQYRADDQEVIQSGKPKLLIEEPQTGPNGSVKTILTSKAPLFNEEGELKGMLGAYTD 138

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY--ANPSFLLLTKYKSVDDIEIAGGL 366
            +      E E    +          +       +   NP+F     + S +++     L
Sbjct: 139 ITELK---EREAEYAQLFALSIDMVCIADINTTAFLKVNPAFTDTLGF-SEEELLNKSFL 194

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
                 P   +          +  +  I    R    +        ++++        PE
Sbjct: 195 D--FLHPDDFEKTRQVVETSLKLGKNVINFENR---YRCKDGTYRWLSWVSHPI----PE 245

Query: 427 NMPQNGIEPEDVD-------TRINKRKMEIEVMQLCSILEATSDGIAI--INREGIILST 477
                 I  +  D           ++++      +  IL+    G+ +  I+  G +   
Sbjct: 246 VGKTYAIARDITDYKDFEMKQASVQQELLKRNRFIEMILDYLPIGLGVNFIDT-GEVTYL 304

Query: 478 NRAVSKLFGYPVEDI--LRKPFTVFLEQ--NTPSVMNHYLTEILSLDLRQTLEKITLGST 533
           NR   +++G+  E+   ++  F           ++    + ++ S D ++   +    +T
Sbjct: 305 NRKFEEIYGWGKEEFPNIQGFFEKVFPDPVEREALQLRIMEDMASGDPKRMAWEDLKITT 364

Query: 534 KEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
           K      +      +   +    T+ D++E ++ + ++  A+K+              V+
Sbjct: 365 KAGAERIVFAKNIPIFDQNLMISTVQDVTEKRKLEAQVQQAQKM-----ESIGRLAGGVA 419

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           H+    L+ I G +E+          N         I ++     D+   LL  ++    
Sbjct: 420 HDFNNMLSIISGCAEMALEDLD---ENAPIAANLQEIQKAAKRSADLTRQLLAFAR---- 472

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713
           +  +  + ++L+E +   + ++      + I +     + + +++ D   V QI  N+  
Sbjct: 473 RQTIAPKALNLNETIESMLKMLSRLI-GEDIDLAWRPKDRLWKVMIDPSQVDQILANLCV 531

Query: 714 NAIHFTPSGGQIIIST--------------THTSNEEVILRVRDTGVGMTNYELEKAMKP 759
           NA       G+I I T                 S E V++ V D G G+    ++K  +P
Sbjct: 532 NAKDAIERDGKITIETNNMFFGEEYCRDHEGFKSGEYVMIAVSDNGCGIKKENMDKLFEP 591

Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
           F          G+GTGLGL     +V  N G   I+S P +GT  ++ FP Y
Sbjct: 592 FFTTKK----IGQGTGLGLATVYGIVKQNNGFLNIYSEPGEGTCFKLYFPRY 639



 Score = 55.0 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/136 (12%), Positives = 43/136 (31%), Gaps = 6/136 (4%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRKPFTV 499
              ++ +      + +IL+A    +   + +   L  N   +K  G+   +D++ K    
Sbjct: 15  HRLEKDLHDSRQIIQTILDAAPVRVFWKDTDLRYLGCNTLFAKDAGFDDPKDMIGKDDYQ 74

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYS 555
              +N          E++     + L +          + ++      L           
Sbjct: 75  MAWKNQAEQYRADDQEVIQSGKPKLLIEEPQT-GPNGSVKTILTSKAPLFNEEGELKGML 133

Query: 556 LTMHDISEWKQEKNKL 571
               DI+E K+ + + 
Sbjct: 134 GAYTDITELKEREAEY 149



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/308 (7%), Positives = 76/308 (24%), Gaps = 21/308 (6%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD--LLKRQNTWYGKTTLWPI 152
             +++     T+G    +++     D       +    + +  L   +N    +      
Sbjct: 170 FLKVNPAFTDTLGFSEEELLNKSFLDFLHPDDFEKTRQVVETSLKLGKNVINFENRYRCK 229

Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212
           +GT  ++      +P   +         + I        D       + ++    +   +
Sbjct: 230 DGTYRWLSWVSHPIPEVGKT--------YAIARDITDYKDFEMKQASVQQELLKRNRFIE 281

Query: 213 GHSSVEKEKYDIFSQQSPPP--HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES--S 268
                      +    +       R   ++    +           + +P     E+   
Sbjct: 282 MILDYLPIGLGVNFIDTGEVTYLNRKFEEIYGWGKEEFPNIQGFFEKVFPDPVEREALQL 341

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
              ++           +     T     +  F         +L     +      +   +
Sbjct: 342 RIMEDMASGDPKRMAWEDLKITTKAGAERIVFAKNIPIFDQNLMISTVQDVTEKRKLEAQ 401

Query: 329 CPIPFFVYSHGNL-----FYANPSFLLLTKYK--SVDDIEIAGGLSTLLDAPKLSDNNAI 381
                 + S G L        N    +++     +++D++    ++  L   + +   + 
Sbjct: 402 VQQAQKMESIGRLAGGVAHDFNNMLSIISGCAEMALEDLDENAPIAANLQEIQKAAKRSA 461

Query: 382 KPVMLYRS 389
                  +
Sbjct: 462 DLTRQLLA 469


>gi|302381354|ref|YP_003817177.1| response regulator receiver modulated diguanylate phosphodiesterase
           [Brevundimonas subvibrioides ATCC 15264]
 gi|302191982|gb|ADK99553.1| response regulator receiver modulated diguanylate phosphodiesterase
           [Brevundimonas subvibrioides ATCC 15264]
          Length = 1138

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 83/248 (33%), Positives = 128/248 (51%), Gaps = 5/248 (2%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  A+  AE+ ++ KSDFLA +SHEIRTPL  I+  S+++           R   YA+ 
Sbjct: 261 ELVVARDAAEQANAAKSDFLAVMSHEIRTPLNGILALSDMLATSDL----PQRQQRYADV 316

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I +SG  +L I+ND+LD SK+E+GKM+L    V L +A  +  SL    A  K + +   
Sbjct: 317 ISKSGKSLLGIINDILDFSKVEAGKMDLEIVEVDLADAAEDVASLFSEKAASKGLDLAVF 376

Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVILRVRDTGVGM 748
               +P++L D   ++Q+  N+++NAI FT  GG  I I         + + V DTG G+
Sbjct: 377 VDPRLPQVLGDPTRLRQVIGNLVNNAIKFTDLGGVLIAIDRDPEDPRRIRVAVHDTGPGI 436

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
              +L    + F Q   S      GTGLGL +   +V +  G + + ST  +G+      
Sbjct: 437 PADKLPTLFEAFTQADQSTTRTHGGTGLGLAICDRLVRSMGGVWSLSSTVGEGSTFAFSA 496

Query: 809 PLYDTSHP 816
           PL+  + P
Sbjct: 497 PLHPVADP 504


>gi|299070032|emb|CBJ41318.1| putative two-component transcription regulator and sensor protein
           [Ralstonia solanacearum CMR15]
          Length = 796

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 100/633 (15%), Positives = 207/633 (32%), Gaps = 47/633 (7%)

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           ++  G                P      +    +      H       +       +   
Sbjct: 35  DLLDGTRLHVSAAARQRWGMMPETLCGPREHWLAHVHSGDHAALRAAWQGLA----QGRD 90

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS----HRNHPSLSAYFDEGENLTPE 324
              +  +   +  ++  ++    L      +   +             A   E E     
Sbjct: 91  FALEYRWIGTDGAEHRVRECGYRLPAQGGAATHAVGVVEDMTQRLRTLAELTESEFQLQW 150

Query: 325 TVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
             +  P P       + + +AN ++       + D +        + +         +  
Sbjct: 151 LAESIPFPIVQLGPDHCIRFANHAYAQRFGLPAADVLGR-----HVRELMGHEAYQRVLA 205

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
            ++       +     L    +  +    +      +     + +    I  +  + +  
Sbjct: 206 HLMKGFAGQRVDFEMEL-EYPYVGQGRRFIHAAYTPQRGPDGKVVALVCIIEDITERKEA 264

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF-LE 502
           +R+      +  +++E   D IA ++     +  NRAV++ FG P  +++ +  +   L 
Sbjct: 265 ERERFRHQREFVTLVENAPDIIARLDPALRCVYINRAVTEAFGVPSGELIGQALSDSGLP 324

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTM 558
                 +             Q L            +      +              L +
Sbjct: 325 ACITGPLEAAAQCAFDTGGEQALTLHLEADAARPHVAHYNARVIPEADRHGEMESALLII 384

Query: 559 HDISEWKQEKNKLS-------HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
           +D+SE  + + + +        A+  AE  +  +  FLA VSHE+R+PL  I  ++ V++
Sbjct: 385 YDVSERTEAERERNALLLREQAARAQAEAAAHARDQFLAVVSHELRSPLNGIQSWAYVLE 444

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
           NQ     G          I       + ++ DLLD +++ SGK+ L  +P  L  A+  A
Sbjct: 445 NQL--AEGPQPVQRALAGIRTGVAQQVRLIEDLLDATRVMSGKLRLTRQPFPLRTALERA 502

Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
           +  V+  A E+RI +  +++     I  D   ++QI  N+LSNAI FT  GG + ++   
Sbjct: 503 LDSVRAQAAERRITLHEAWSLGTEEIDGDADRIQQIVWNLLSNAIKFTQEGGDVWLAADV 562

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG--------EGTGLGLPLAKA 783
           +  E   + VRD G G+    +     PF Q   S   R                   K 
Sbjct: 563 S-GEVARIVVRDNGRGIAPAFVPHLFDPFRQADGSHTRRTGGLGLGLAL--------VKR 613

Query: 784 MVDANMGKFYIFS-TPAKGTLIEIIFPLYDTSH 815
           + + + G  +  S     G    +  PL++ + 
Sbjct: 614 LTELHGGLVHAQSDGEQHGATFAVYLPLHEGAE 646



 Score = 65.8 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 38/400 (9%), Positives = 90/400 (22%), Gaps = 17/400 (4%)

Query: 56  DQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIG 115
           D  Q   +     +SE    +            +     ++  +    +  G  A  ++G
Sbjct: 130 DMTQRLRTLAELTESEFQLQWLAESIPFPIV-QLGPDHCIRFANHAYAQRFGLPAADVLG 188

Query: 116 MRLCDV-SDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNRE 174
             + ++     +     H+      Q   +     +P  G      I  A  P    + +
Sbjct: 189 RHVRELMGHEAYQRVLAHLMKGFAGQRVDFEMELEYPYVGQGRRF-IHAAYTPQRGPDGK 247

Query: 175 FSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP---- 230
                   I+       +      R  ++F  L E      +                  
Sbjct: 248 VVAL--VCIIEDITERKEAERERFRHQREFVTLVENAPDIIARLDPALRCVYINRAVTEA 305

Query: 231 --PPHLRMKNKVSSLTEYYAHKDDVLKTEKY-PLLTSEESSLPEQEDFHTINLNQYTKKQ 287
              P   +  +  S +   A     L+        T  E +L    +      +      
Sbjct: 306 FGVPSGELIGQALSDSGLPACITGPLEAAAQCAFDTGGEQALTLHLEADAARPHVAHYNA 365

Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPS 347
                 +   E    L      S     +   N                      +A   
Sbjct: 366 RVIPEADRHGEMESALLIIYDVSERTEAERERNAL-----LLREQAARAQAEAAAHARDQ 420

Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
           FL +  ++    +      + +L+         ++  +                 +   R
Sbjct: 421 FLAVVSHELRSPLNGIQSWAYVLENQLAEGPQPVQRALAGIRTGVAQQVRLIEDLLDATR 480

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
             S  +         +       + +  +  + RI   + 
Sbjct: 481 VMSGKLRLTRQPFPLRTALERALDSVRAQAAERRITLHEA 520



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 28/255 (10%), Positives = 63/255 (24%), Gaps = 10/255 (3%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK-RQNTWYGK 146
            +D       I+  + +  G  + ++IG  L D      I                    
Sbjct: 288 RLDPALRCVYINRAVTEAFGVPSGELIGQALSDSGLPACITGPLEAAAQCAFDTGGEQAL 347

Query: 147 TTLWPIEGTNLYVPID-LAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           T     +    +V       +P   R+ E        I++      +       L  +  
Sbjct: 348 TLHLEADAARPHVAHYNARVIPEADRHGEME--SALLIIYDVSERTEAERERNALLLREQ 405

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
                 +  +    +   + S +   P   +++    L    A     ++     + T  
Sbjct: 406 AARAQAEAAAHARDQFLAVVSHELRSPLNGIQSWAYVLENQLAEGPQPVQRALAGIRTGV 465

Query: 266 ESSLPEQEDFHTI------NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
              +   ED           L    +     T    + +S    +     +L   +  G 
Sbjct: 466 AQQVRLIEDLLDATRVMSGKLRLTRQPFPLRTALERALDSVRAQAAERRITLHEAWSLGT 525

Query: 320 NLTPETVDKCPIPFF 334
                  D+     +
Sbjct: 526 EEIDGDADRIQQIVW 540


>gi|292487219|ref|YP_003530091.1| sensor histidine kinase/response regulator [Erwinia amylovora
           CFBP1430]
 gi|292900406|ref|YP_003539775.1| two-component system, sensor kinase and response regulator [Erwinia
           amylovora ATCC 49946]
 gi|291200254|emb|CBJ47382.1| two-component system, sensor kinase and response regulator [Erwinia
           amylovora ATCC 49946]
 gi|291552638|emb|CBA19683.1| sensor histidine kinase/response regulator [Erwinia amylovora
           CFBP1430]
          Length = 909

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 87/334 (26%), Positives = 150/334 (44%), Gaps = 19/334 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           LF Y +   +  P    +               L   +   +             +++ +
Sbjct: 193 LFAYRLMRDVTGPIRNMVSTVDR-----IRRGQLDSRVEGYMLGELDVLKNGINSMAMSL 247

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 248 TAYHEEMQQNIDQATSDLRETLEQMEIQNVELDMAKKRAQEAARIKSEFLANMSHELRTP 307

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+     Q      N    +Y + I+RS N +L I+ND+LD SK+E+GK+ L  
Sbjct: 308 LNGVIGFT----RQTLKTTLNSTQRDYLHTIERSANNLLSIINDVLDFSKLEAGKLVLET 363

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P  L   + E + L+   A+EK + +  +  +++P   + D   ++QI +N+L NAI F
Sbjct: 364 IPFPLRATLDEVVVLLAQSAHEKGLELTLNIQSDVPDNAIGDPLRMQQIIVNLLGNAIKF 423

Query: 719 TPSGGQIIISTTHTS----NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           T SG  I I     +      E+ +++ DTG+G++  +  +  + F Q   S   R  GT
Sbjct: 424 TESG-NIDIRVEKRALSNNRMELEVQIHDTGIGISEKQQSQLFQAFRQADASISRRHGGT 482

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           GLGL + + +V+   G+    S   +G+      
Sbjct: 483 GLGLVITQKLVNEMGGEISFHSRLHRGSTFWFHI 516


>gi|269138437|ref|YP_003295137.1| phosphate regulon sensor protein [Edwardsiella tarda EIB202]
 gi|267984097|gb|ACY83926.1| phosphate regulon sensor protein [Edwardsiella tarda EIB202]
 gi|304558463|gb|ADM41127.1| Phosphate regulon sensor protein PhoR [Edwardsiella tarda FL6-60]
          Length = 433

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 75/407 (18%), Positives = 149/407 (36%), Gaps = 43/407 (10%)

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
            + L +       + +        G+       R  +R++ + + +  S  E+  D I +
Sbjct: 54  SHWLWVDRSMTPPSGRGSWEPLFYGLYQMQQRNRRRRRELALLIKRFRSGAESLPDAIVM 113

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
           +  EG I   N     L G+   +   +     L     S                   +
Sbjct: 114 LTDEGNIFWCNHLAQHLLGFRWPEDNGQNIRNLLRYPEFSRYL----------GDADYAR 163

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
                    + +  R++           +   D+++ +Q +                + +
Sbjct: 164 PLTLHLNSGRYMEFRLMPY---SEGQMLMIARDVTQKRQLEG--------------ARRN 206

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           F A VSHE+RTPLT + G+ E+  +        P+  +    +      +  +V  LL +
Sbjct: 207 FFANVSHELRTPLTVLQGYLEMFGDDAMPA---PQREKALLTMQAQAQRMDGLVRQLLVL 263

Query: 648 SKIESGKMNLHFEPVSLDEAVS--EAISLVQLYANE---KRILIRTSFANNIPRILADLR 702
           S+IE+         + L   V     + +++  AN     +  +R S  + + R+  +  
Sbjct: 264 SRIEAAP------DIDLSAVVDVPAMLHMLEREANALSDGQHTLRFSIDDGL-RVRGNEE 316

Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
            ++    N++ NAI+ TP+G QI +    T+       V+D G G+    L    + F +
Sbjct: 317 QLRSAVSNLVYNAINHTPAGTQIRVCWQRTAQG-AYFSVQDNGPGIAQEHLSHLTERFYR 375

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +  S+  R  G+GLGL + K  +  +  +  I S   +GT      P
Sbjct: 376 VDRSRSSRTGGSGLGLAIVKHALQHHEAQLAIDSALGQGTRFAFTLP 422


>gi|169334578|ref|ZP_02861771.1| hypothetical protein ANASTE_00981 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259295|gb|EDS73261.1| hypothetical protein ANASTE_00981 [Anaerofustis stercorihominis DSM
           17244]
          Length = 591

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 88/246 (35%), Positives = 133/246 (54%), Gaps = 10/246 (4%)

Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
           +  L       +  +S KS+FL+R+SH++RTPL  IIG S +  N     +      +Y 
Sbjct: 202 QESLKAKLNEEKSANSAKSEFLSRMSHDLRTPLNGIIGSSYLALNDD---IPREEVNDYL 258

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
           N I++SG  +L ++ND+LD+SKIES KM LH EP +L E +    S+++   +E  I   
Sbjct: 259 NKINQSGKYLLSLINDVLDMSKIESDKMELHPEPYTLSEFLDTVNSIIKEQCSENDIDFD 318

Query: 688 TSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH--TSNEEV--ILRVR 742
                 +I  ++ D     QI LN+LSN++ FTP GG+I +   H    ++++     VR
Sbjct: 319 IVCKEVDIKCVMLDRLRFNQIFLNLLSNSVKFTPKGGKIDLIIEHLSKDDDKIKKRFIVR 378

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG+GM+   L  A +PF Q         EGTGLGL +   +V+   G+ YI S P KGT
Sbjct: 379 DTGIGMSKEFLAHAFEPFTQEKAGDTS--EGTGLGLSIVYKIVELMNGRIYIESEPGKGT 436

Query: 803 LIEIIF 808
            + +  
Sbjct: 437 SVTVEL 442


>gi|149174016|ref|ZP_01852644.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797]
 gi|148846996|gb|EDL61331.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797]
          Length = 540

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 78/255 (30%), Positives = 134/255 (52%), Gaps = 6/255 (2%)

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
             + +     Q   +    +  AE  +  KS FLA +SHEIRTP+TAI+G++++++ +  
Sbjct: 118 ARVRNAIRALQLLREQKTLRIQAEAANQSKSAFLANMSHEIRTPMTAILGYTDILELEAK 177

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
                    +  + I R+G  +++++ND+LD+SKIE+GK+++     S    V E + LV
Sbjct: 178 SLQLPELISDSLDTIKRNGGHLMELINDILDLSKIEAGKLDVESICCSPQTIVEEVLELV 237

Query: 676 QLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
           Q+ A  K + +  S+   +P  I +D   ++QI +N++ NAI FT  G  I ++T+   N
Sbjct: 238 QVRAEAKGLKLEASYQFPLPAEIHSDPTRIRQILINLIGNAIKFTEVG-TIRLNTSFLEN 296

Query: 735 ----EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
                +V   V D G+GMT  ++    +PF Q  +S   +  GTGLGL + K + D   G
Sbjct: 297 PGEEPQVQFTVIDQGIGMTEAQMSNLFRPFSQADSSTTRKYGGTGLGLTICKRLTDVLGG 356

Query: 791 KFYIFSTPAKGTLIE 805
              + S   +G+   
Sbjct: 357 DISVTSKLNQGSQFS 371


>gi|77456275|ref|YP_345780.1| alginate biosynthesis sensor protein KinB [Pseudomonas fluorescens
           Pf0-1]
 gi|77380278|gb|ABA71791.1| putative two-component system, sensor kinase [Pseudomonas
           fluorescens Pf0-1]
          Length = 596

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 84/425 (19%), Positives = 169/425 (39%), Gaps = 28/425 (6%)

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK--R 445
            + R      A         + +  +T  P   A +      + G+  E +         
Sbjct: 194 IARRFGAPIEALAKAADNIGQGNFEVTL-PVSSAMEINLLTRRFGLMAEALREHQATNVD 252

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           ++     +L ++L++  DG+ +I+R+G +   N    +  G+  +       T       
Sbjct: 253 ELLAGQQRLQAVLDSIDDGLLMIDRQGRLEHLNPVAQRQLGWDSDRFGEGLGTALQRPEL 312

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISE 563
            + +   L         + L         E +LL+  +              + +HD++E
Sbjct: 313 DAQLQLVLRGGTLERAPEDLSIEV---DGESRLLTYSLTPVSHTQGHILGAVMVLHDVTE 369

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            +  +                +S+F+ R SHE+RTP+T  +  +  +  +R       R 
Sbjct: 370 QRAFE--------------RVRSEFVLRASHELRTPVTG-MHMAFGLFRERAKFPEESRE 414

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            +  + ++     ++ ++NDLL+ S+ +SG   L   P S++E +  A       A +K 
Sbjct: 415 SDLLDTVNEEMQRLMQLINDLLNFSRYQSGLQKLTLAPCSIEELLERARLRFADSAAQKG 474

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
           + +      ++PR+ AD   + ++  N++ NA+  T   G I +       E VI+ V D
Sbjct: 475 VALNVEAQGSLPRLQADQAQLDRVLDNLIDNALRHTARDGLIRLQ-ARRHGERVIISVED 533

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
            G G+   +  +  +PF Q+      +  G GLGL L K +V  + G+  ++S P +GT 
Sbjct: 534 NGEGIAYGQQGRIFEPFVQV----GRKKGGAGLGLALCKEIVQLHGGRMGVYSRPGQGTQ 589

Query: 804 IEIIF 808
             +  
Sbjct: 590 FYMAL 594



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/241 (11%), Positives = 67/241 (27%), Gaps = 9/241 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G L+ ++    + +G  + +  G  L        +D       L+ R  T      
Sbjct: 275 IDRQGRLEHLNPVAQRQLGWDSDR-FGEGLGTALQRPELDAQ---LQLVLRGGTLERAPE 330

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
              IE       +  +  P+        G     ++H          +  R +      H
Sbjct: 331 DLSIEVDGESRLLTYSLTPVSHTQGHILGA--VMVLHDVTEQRAFERV--RSEFVLRASH 386

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           E+ +   +     + +F +++  P    ++ +         +   L  +       +   
Sbjct: 387 EL-RTPVTGMHMAFGLFRERAKFPEESRESDLLDTVNEEMQRLMQLINDLLNFSRYQSGL 445

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
                   +I       +  F         +    +  + P L A   + + +    +D 
Sbjct: 446 QKLTLAPCSIEELLERARLRFADSAAQKGVALNVEAQGSLPRLQADQAQLDRVLDNLIDN 505

Query: 329 C 329
            
Sbjct: 506 A 506


>gi|295674073|ref|XP_002797582.1| two-component system protein A [Paracoccidioides brasiliensis Pb01]
 gi|226280232|gb|EEH35798.1| two-component system protein A [Paracoccidioides brasiliensis Pb01]
          Length = 652

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 95/363 (26%), Positives = 168/363 (46%), Gaps = 24/363 (6%)

Query: 457 ILEAT-SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP--SVMNHYL 513
           ++++     I ++  EG + + N   S L GY  E+I+ + F++F  Q           L
Sbjct: 135 LIDSVKHVVIFMLTPEGNVATWNDGASALKGYAAEEIIGQHFSIFYSQEDRLKDKPRKEL 194

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNK 570
            + L       LE       K+       ++I  +        +S    DI++ K+ +++
Sbjct: 195 DKCLQDGK---LEDEGWRVRKDGTKFFANVVISPVYRFRVLVGFSKVTRDITDRKETEDR 251

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           L       E+ +  KS FLA +SHEIRTP+  ++    ++K+       N +  EYA  I
Sbjct: 252 LV---AAYEESAKLKSQFLANMSHEIRTPMHGMLAALTLLKDTGL----NDKQDEYARII 304

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
           + SG+++L ++ND+LD SK+ SG   L+ + +S+ +    AI   Q       +++ +  
Sbjct: 305 ENSGSILLRVINDILDYSKLSSGTFTLNSDLLSVQQIHRNAIQHCQTLLKS-GVILTSEV 363

Query: 691 ANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDTG 745
           A  IP     D    +QI  N+L N+  FT SG  I + +  TS+E     V   V DTG
Sbjct: 364 AEAIPEFSKGDPLRYQQILQNLLMNSAKFTESGS-IHVRSKLTSDESSSHRVHTEVIDTG 422

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP-AKGTLI 804
           +G+     ++   PF Q+ +S   + +G GLGL + + ++D   G       P  +G++ 
Sbjct: 423 IGVPAEAAKRLFDPFTQVFSSTGEQYQGIGLGLAICRNLIDFMGGSIGYHPNPDGQGSVF 482

Query: 805 EII 807
              
Sbjct: 483 WFS 485



 Score = 48.5 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/142 (14%), Positives = 41/142 (28%), Gaps = 10/142 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI--DPNNHIGDLLKRQNTW 143
            + +   G +   ++      G  A ++IG              D      D   +    
Sbjct: 144 IFMLTPEGNVATWNDGASALKGYAAEEIIGQHFSIFYSQEDRLKDKPRKELDKCLQDGKL 203

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +      +GT  +  + ++  P+Y R R   GF         R   D +    RL   
Sbjct: 204 EDEGWRVRKDGTKFFANVVIS--PVY-RFRVLVGFSKV-----TRDITDRKETEDRLVAA 255

Query: 204 FSHLHEIKKGHSSVEKEKYDIF 225
           +    ++K    +    +    
Sbjct: 256 YEESAKLKSQFLANMSHEIRTP 277


>gi|148550789|ref|YP_001260228.1| multi-sensor hybrid histidine kinase [Sphingomonas wittichii RW1]
 gi|148503208|gb|ABQ71461.1| multi-sensor hybrid histidine kinase [Sphingomonas wittichii RW1]
          Length = 1143

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 83/311 (26%), Positives = 149/311 (47%), Gaps = 6/311 (1%)

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDI 561
                +           L+ +    + +     E++ + L     +L   +    T  D 
Sbjct: 395 AGELQAQSEELRVSNEELEEQGRALRESQVRL-EQQQVELEQTNSQLEEQAQTLETQRD- 452

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
            E ++    L       E+ S +KSDFLA +SHE+RTPL +++  S+++ +   G L + 
Sbjct: 453 -ELERAGAALGAKAHELEQASQYKSDFLANMSHELRTPLNSLLILSKLLGDNSQGNLSDE 511

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
             I+YAN I+ SGN +L ++ND+LD+SKIE+G + +  E V+L     +        A +
Sbjct: 512 -QIKYANTIESSGNDLLTLINDILDLSKIEAGHIEIRPETVALQRLTGDLRRTFDPLAEK 570

Query: 682 KRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
           K +    S +++  R I +D   ++QI  N+LSNA  FT  G Q+ ++     +  +   
Sbjct: 571 KGLGFDISLSDDCARTIESDRMRLEQILKNLLSNAFKFTERG-QVSLAIERVDDAFIRFA 629

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V DTG+G++  +     + F Q   +   +  GTGLGL +++ +     G+  + S P +
Sbjct: 630 VSDTGIGISAEQQASIFEAFHQADATISRKFGGTGLGLSISRELARLLGGRIALESRPGE 689

Query: 801 GTLIEIIFPLY 811
           G+   +  PL 
Sbjct: 690 GSTFTLTIPLA 700


>gi|73541849|ref|YP_296369.1| sensor histidine kinase [Ralstonia eutropha JMP134]
 gi|72119262|gb|AAZ61525.1| ATP-binding region, ATPase-like:Histidine kinase A, N-terminal
           [Ralstonia eutropha JMP134]
          Length = 444

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 74/408 (18%), Positives = 165/408 (40%), Gaps = 35/408 (8%)

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM-----EIEVMQLCSILEATSDGI 465
                +      + P      G     +   + + ++     E +  +    ++A+ +G+
Sbjct: 52  RLWKVLDAPAYGEIPSAPGLWGEVYYRLHRLVKRWRLQVLQVEQQHTRFIQAIQASPNGV 111

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
            +++    I   N       G      +R+  T  + +        ++  +      + L
Sbjct: 112 LMLDDADQIEWCNSVAELHLGLNARRDVRQRITHLIRRP------EFVHYLTRQRFDEPL 165

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
               +G  K+  ++S++++       +   +   DI++ +  +              + +
Sbjct: 166 AMRDMGEHKQG-VISVQVLPY---GDNRKLVITQDITKLENTE--------------AMR 207

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
            DF+A VSHE++TPLT + GF E +++    P+       Y + +      +  IV DLL
Sbjct: 208 RDFVANVSHELKTPLTVLTGFLETVRD---LPVSEEDRQRYVDMMLVQSMRMQSIVEDLL 264

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
            ++K+ES       + V + E V   +   +  +  +   I       +  +      + 
Sbjct: 265 ALAKLESDAQPPGQDLVPVREMVDHLVHDAEALSQGRH-HIAAEIDPTV-ELRGTESELM 322

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
               N++SNA+ +TP+GG+I +      +   +  V DTG+G+    + +  + F ++  
Sbjct: 323 SALGNLVSNAVRYTPAGGRITVRLGW-DDGHAVFSVADTGLGIAPEHIPRLTERFYRVDR 381

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
           S+     GTGLGL + K +V  +  +  + S   +G++  IIFP+  +
Sbjct: 382 SRSRDTGGTGLGLAIVKHVVSRHHAELRVNSEVGRGSVFRIIFPIERS 429


>gi|332286632|ref|YP_004418543.1| PhoR [Pusillimonas sp. T7-7]
 gi|330430585|gb|AEC21919.1| PhoR [Pusillimonas sp. T7-7]
          Length = 431

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 75/356 (21%), Positives = 146/356 (41%), Gaps = 27/356 (7%)

Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
           EA  DG   ++   +++ +N+  S+  G  ++          L          +      
Sbjct: 100 EALPDGAITLDESMLLIWSNKTASEHLGLDLQVDRNHSIFNILRAP------EFARYARQ 153

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578
                 L    L    +    +L + + +      + +   D+++ ++ +          
Sbjct: 154 TSWPTPL---LLHLNADGHEKALLVQLTRYGLGQ-FLVVTRDVTQVEKLETT-------- 201

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
                 + DF+A VSHE+RTPLT + GF E + +     L + +   Y   +      + 
Sbjct: 202 ------RKDFVANVSHELRTPLTVLSGFLETLHDMPDESLSDEQRQRYLAMMLEQAQRMQ 255

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
            IV DLL +S +ES   ++  EPV L   +  A+   ++ +N++ + +  +    +  + 
Sbjct: 256 AIVEDLLTLSTLESS-PSIEGEPVRLGAIIHTALQQGRVLSNDQHVFME-NVDEELC-VN 312

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
                +     N+L+NAI +TP  G I +S   T        V+DTG+G+   ++ +  +
Sbjct: 313 GIETELASAVSNLLTNAIRYTPKDGTITVSWYVTDQGHACYSVQDTGIGIAAQDIPRLTE 372

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
            F ++   +     GTGLGL + K +   +  +  I S    G+L  +IFP    S
Sbjct: 373 RFYRVDRGRSRATGGTGLGLAITKHVAMRHNAELSIHSRFGAGSLFSVIFPASRIS 428


>gi|223986669|ref|ZP_03636659.1| hypothetical protein HOLDEFILI_03981 [Holdemania filiformis DSM
           12042]
 gi|223961355|gb|EEF65877.1| hypothetical protein HOLDEFILI_03981 [Holdemania filiformis DSM
           12042]
          Length = 879

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 96/377 (25%), Positives = 158/377 (41%), Gaps = 12/377 (3%)

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKP-F 497
            R     +         +     D   I N +E  +   +    ++ G   + +     F
Sbjct: 207 ERRRVHDVADREKMFDLLSNNVDDVFFIYNLKEKWMEYISPNCERILGLNEDQLQHYDAF 266

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-CYSL 556
           T  L +N  + +       + L  +  +     G    +K L L+     +      Y +
Sbjct: 267 TAKLSENDQAALYQLFHSGI-LRSQAEISLKMEGQGIRDKWLLLKAYPILVNDQVVRYII 325

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
           ++ D ++    +  L  A  +A+K +  K DFL+R+SHEIRTP+ AIIG + +       
Sbjct: 326 SIGDQTDALLAQQNLRDALTLAQKANDAKKDFLSRMSHEIRTPMNAIIGMATIAAANIH- 384

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
                R  +    I  S   +L ++ND+LD+SKIE GK+ +  EP    + +    S++ 
Sbjct: 385 --DQNRVEDCLAKIGFSSKHLLSLINDVLDMSKIEEGKLTMSHEPFEFRQLIQSITSIID 442

Query: 677 LYANEKRILIR-TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT--S 733
             A  +      T        ++ D   V QI LN+LSNA+ FTP  G+I +        
Sbjct: 443 SQARSRNQNFEATVVDFTEEMVVGDAMRVNQILLNLLSNAVKFTPENGKIRLEVRQIGIR 502

Query: 734 NEEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
           N +V     V DTG+GM    L++   PF Q  +    R  GTGLG+ + K +V    G 
Sbjct: 503 NNQVRMRFTVSDTGIGMNENFLQRLYMPFEQADSMISQRFGGTGLGMSITKNLVSLLGGT 562

Query: 792 FYIFSTPAKGTLIEIIF 808
             +FS   +GT   +  
Sbjct: 563 IQVFSKENEGTTFIVEL 579


>gi|134056912|emb|CAK44259.1| unnamed protein product [Aspergillus niger]
          Length = 2262

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 74/250 (29%), Positives = 126/250 (50%), Gaps = 10/250 (4%)

Query: 565  KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
            K  + +  H  K+ E  +  KS FLA +SH++RTP+  +IG SE++K  +     +    
Sbjct: 1794 KVAEAEAKHNVKLKEDAAKAKSIFLANISHDLRTPMNGVIGLSELLKGTKL----DREQD 1849

Query: 625  EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
            EY   I    + +L ++ND+LD SK+E+GKM +   P+++ E +SE +  ++    ++ +
Sbjct: 1850 EYVESIRVCADTLLTLINDILDFSKLEAGKMKISTVPLNIRETISEVVRALRYTHRDRGL 1909

Query: 685  LIRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL-- 739
                      P   +L D   + QI +N+LSN+  FTP G   +    +      V L  
Sbjct: 1910 ETIEDLDKVPPELVVLGDPVRLHQIFMNLLSNSYKFTPKGSVTVRAKVSREGKGRVRLEC 1969

Query: 740  RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA-NMGKFYIFSTP 798
             V DTG+G++  +  +  +PF Q  NS      G+GLGL + KA+++    G  ++ ST 
Sbjct: 1970 SVSDTGIGISEEQKSRLFRPFSQADNSTARSYGGSGLGLSICKAIIEDVLGGAIWLDSTS 2029

Query: 799  AKGTLIEIIF 808
              GT +    
Sbjct: 2030 GVGTTVTFHL 2039


>gi|146302569|ref|YP_001197160.1| PAS/PAC sensor signal transduction histidine kinase [Flavobacterium
            johnsoniae UW101]
 gi|146156987|gb|ABQ07841.1| PAS/PAC sensor signal transduction histidine kinase [Flavobacterium
            johnsoniae UW101]
          Length = 1339

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 112/772 (14%), Positives = 247/772 (31%), Gaps = 73/772 (9%)

Query: 96   KEISEELPKTIGNYAFKMIGMRLCDVSDILHID----PNNHIGDLLKRQNTWYGKTTLWP 151
               S+   + +GNY   +I +   ++   LH D     N    + +   N  Y    +WP
Sbjct: 585  LHYSQRYLEILGNYKDPII-LSHEEILKHLHPDDMQIRNAAFKEAILSGNLHYEARIIWP 643

Query: 152  IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
                N    ++      Y +N      +  G V     + + +   ++ +K+F +L    
Sbjct: 644  ---DNSIHWVEGKGKVFYDKNDNPD--KLIGTVRDITSEKNHQQELEQSEKRFRNLVMQS 698

Query: 212  KGHSSVEKEKYDIFSQQSPP---------PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
                ++ K    +    +                  K+  +    + +       +  L 
Sbjct: 699  PIPKAILKGSDMVIEIANLALLKNIWKKKESDVQGKKLLEIFPELSSQKYGRILNEVYLS 758

Query: 263  TSEESSLPEQ-----EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
                S +        +D   +    +     + T  + S      +             E
Sbjct: 759  GEVHSEIESPILINGDDGEHLFYIDFEYAPMYDTDNSISGIRATIVDVTEKVQARNKIAE 818

Query: 318  GENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLST-------- 368
             E       +  P   +     GN  +A+  +   T  K   D E    +          
Sbjct: 819  SEKRFRSLTESIPQLIWETDEKGNGLFASGKWAEYTGIKPTGDAEWKSMIHPEDFKENIK 878

Query: 369  LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL-AMTFIPFEKANQFPEN 427
            + +    +       V + R D +    +     +       +  +         +   N
Sbjct: 879  IWNHSLHTGQVFRSDVRVLRKDGSYRWHTVLGEPVLDADNKIVKWVGAFTDIHTEKAFTN 938

Query: 428  MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFG 486
              +  +     +       ++    +   ++E   D  I  ++R+GI+ + N    K+ G
Sbjct: 939  ELEQQVTARTRELSQMYESLKKSEERYHLMVEEVQDYAILYLSRDGIVENWNIGAEKIKG 998

Query: 487  YPVEDILRKPFTVFLEQNTPSVMNH--YLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
            Y  ++I  K F +F              L                    K   L    ++
Sbjct: 999  YKAQEITGKYFGIFYTPEDQKNNIPSTLLELAREKGRAVQQGWRVR---KNGTLFWASVV 1055

Query: 545  IKKLPFSS----CYSLTMHDISEWKQEKN-------KLSHAKKIAEKESSHKSDFLARVS 593
            I  +         +S   HD++E K+  +       +L       E  +     F    S
Sbjct: 1056 ITAIHNKDNEVIGFSKVTHDLTEKKRADDKIKLNALELEQKNAELEHMNKELQSFAYISS 1115

Query: 594  HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
            H+++ PL  I  F+  I  + F  L +    ++   +  +   +  +++DLL  S+  + 
Sbjct: 1116 HDLQEPLRKIQTFASQIIEKEFENLSDSGKDKF-QRMQNAAKRMQTLIHDLLSYSR--TN 1172

Query: 654  KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713
              +  FE  SL + + E    ++    +K  +I ++   ++  I       +Q+  N++S
Sbjct: 1173 IQDRTFEQTSLSKIIEEVKEDLREELEQKNAVIESNEIADVSII---PFQFRQLLYNLVS 1229

Query: 714  NAIHFTPS--------------GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKP 759
            N++ F+                G +    +  +  +   ++V D G+G      +K    
Sbjct: 1230 NSLKFSKPDVPALIKIESKIAKGSEFEEKSLESETQYCHIKVSDNGIGFEPQYSKKIFDV 1289

Query: 760  FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
            F ++    + +  GTG+GL + K +V+ + G         +G   +I  P+ 
Sbjct: 1290 FQRLHG--RDQYNGTGIGLAIVKKIVENHNGIITAKGEQNQGASFDIYIPVS 1339



 Score =  105 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 58/534 (10%), Positives = 140/534 (26%), Gaps = 27/534 (5%)

Query: 74  FVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI 133
           F        +  T        ++  +E   K +       +G  L D    +    ++ +
Sbjct: 434 FRDTVKQAPLGITILRGPEYIVESANEAYLKLVDKEENSFVGKPLFDSLPEVRETVDSLL 493

Query: 134 GDLLKRQNTWYGKTTLWPIE--GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN 191
            ++L     ++G     P+   G       D    P+   + E +G      V       
Sbjct: 494 KNVLTTGIPYHGNEVPVPLNRYGKQGIWYFDFLYYPLREEDGEITGI--IVTVTEVSEKV 551

Query: 192 DPRALGKRLDKKFSHLHEIKK-GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY--- 247
           D R   ++ + + + + E  + G   +  +  ++   Q     L        L+      
Sbjct: 552 DARKKIEQNEDRLNIIVEASELGTWDLNVKTGELHYSQRYLEILGNYKDPIILSHEEILK 611

Query: 248 -AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
             H DD+              +L  +      + + +  +       + +    + +   
Sbjct: 612 HLHPDDMQIRNAAFKEAILSGNLHYEARIIWPDNSIHWVEGKGKVFYDKNDNPDKLIGTV 671

Query: 307 NHPSLSAYFDEGENLTPETVDKC------PIPFFVYSHGNLFYANPSFLLLTKYKSVDDI 360
              +      +    + +           P      S   +  AN + L     K   D+
Sbjct: 672 RDITSEKNHQQELEQSEKRFRNLVMQSPIPKAILKGSDMVIEIANLALLKNIWKKKESDV 731

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC-IAASARLHTIQWNRENSLAMTFIPFE 419
           +    L      P+LS     + +              + +     + E+   + F    
Sbjct: 732 QGKKLLEIF---PELSSQKYGRILNEVYLSGEVHSEIESPILINGDDGEHLFYIDFEYAP 788

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
             +             +  +    + K+     +  S+ E+    I   + +G  L  + 
Sbjct: 789 MYDTDNSISGIRATIVDVTEKVQARNKIAESEKRFRSLTESIPQLIWETDEKGNGLFASG 848

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
             ++  G          +   +               L     Q          K+    
Sbjct: 849 KWAEYTGIKPTGDA--EWKSMIHPEDFKENIKIWNHSLHTG--QVFRSDVRVLRKDGSYR 904

Query: 540 SLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
              ++ + +  +      +     DI   K   N+L        +E S   + L
Sbjct: 905 WHTVLGEPVLDADNKIVKWVGAFTDIHTEKAFTNELEQQVTARTRELSQMYESL 958



 Score = 83.5 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 56/512 (10%), Positives = 154/512 (30%), Gaps = 36/512 (7%)

Query: 98  ISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTW--YGKTTLWPIEG 154
            +E++ +  G  + K++   + +V   +        I ++      +    +      +G
Sbjct: 197 ANEKMIQLWGTTSEKVLNKSIFEVLPEIKDQGLEELIQNVYTTGKKFIANERLVELSRDG 256

Query: 155 TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK-- 212
              +  ++     +       SG     I        + R+  ++ ++K   L E     
Sbjct: 257 KTEHTYVNFIYEALTECTGSISGVVAIAI--EVTDQVEARSKLQQSEQKIRQLVENAPFP 314

Query: 213 -GHSSVEKEKYDIFSQQSPPPHLRMKNKVS-SLTEYYAHKDDVLKTEKYPLLTSEESSLP 270
            G     + + ++ +        +  + +  S  E     ++    E+   + +   S  
Sbjct: 315 IGVYVGREMRIELANDSIIKVWGKGPDVIGKSYREILPELNNQSVFEQVESVLNTGKSFH 374

Query: 271 EQEDFHTI----NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS----LSAYFDEGENLT 322
            +     I     L  +     F  L + +++ +  ++     +     S   +  +   
Sbjct: 375 NKNARIDIMINNKLETFYFNYSFTPLFDTNEKVYAVMNTAADVTDLHLASKKIEIADKRF 434

Query: 323 PETVDKCPIPFFVYSHGN--LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
            +TV + P+   +       +  AN ++L L   +    +        L D+        
Sbjct: 435 RDTVKQAPLGITILRGPEYIVESANEAYLKLVDKEENSFVGKP-----LFDSLPEVRETV 489

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLA-MTFIPFEKANQFPENMPQNGIEPEDVD 439
              +    +       +     +    +  +    F+ +    +  E         E  +
Sbjct: 490 DSLLKNVLTTGIPYHGNEVPVPLNRYGKQGIWYFDFLYYPLREEDGEITGIIVTVTEVSE 549

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFG--YPVEDILRKP 496
               ++K+E    +L  I+EA+  G   +N + G +   ++   ++ G       +  + 
Sbjct: 550 KVDARKKIEQNEDRLNIIVEASELGTWDLNVKTGELHY-SQRYLEILGNYKDPIILSHEE 608

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR----IIIKKLPFSS 552
               L  +   + N    E +       L         +  +  +     +   K     
Sbjct: 609 ILKHLHPDDMQIRNAAFKEAILSGN---LHYEARIIWPDNSIHWVEGKGKVFYDKNDNPD 665

Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
               T+ DI+  K  + +L  ++K        
Sbjct: 666 KLIGTVRDITSEKNHQQELEQSEKRFRNLVMQ 697



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/279 (8%), Positives = 79/279 (28%), Gaps = 16/279 (5%)

Query: 315 FDEGENLTPETVDKCPIPFFVYSHGNLFY-ANPSFLLLTKYK-SVDDIEIAGGLSTLLDA 372
           + +        +   P   ++          N +F  +       D +  +         
Sbjct: 37  WPQSLRTITSVMLNNPFGMYIAWGNEFTQLYNDAFRKIIGSDKHPDALGNSP--EKTFSE 94

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE-NSLAMTFIPFEKANQFPENMPQN 431
                N   + VM    +   I+    +  +  N    +    F       +  +     
Sbjct: 95  IWHITNPMFEEVM----NGKSISFPDFVVPLNRNGVVETCYFDFSYSPIRIENGKVGGIL 150

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVE 490
               E    +     ++ +  +  + +      + I   ++ I+   N  + +L+G   E
Sbjct: 151 VTVIETTAKKKAADLLKEKNERFKNNIMQAPLAMCIFRGKDHIVEIANEKMIQLWGTTSE 210

Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK--- 547
            +L K     L +     +   +  + +   +    +  +  +++ K     +       
Sbjct: 211 KVLNKSIFEVLPEIKDQGLEELIQNVYTTGKKFIANERLVELSRDGKTEHTYVNFIYEAL 270

Query: 548 ---LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
                  S       ++++  + ++KL  +++   +   
Sbjct: 271 TECTGSISGVVAIAIEVTDQVEARSKLQQSEQKIRQLVE 309



 Score = 54.6 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 42/419 (10%), Positives = 109/419 (26%), Gaps = 54/419 (12%)

Query: 68   LDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI 127
             +SE  F         +  W  D  G     S +  +  G             +      
Sbjct: 817  AESEKRFRSLTESIP-QLIWETDEKGNGLFASGKWAEYTGIKPTGD--AEWKSMIHPEDF 873

Query: 128  DPNNHIG-DLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHV 186
              N  I    L     +     +   +G+  Y    +   P+   + +    +  G    
Sbjct: 874  KENIKIWNHSLHTGQVFRSDVRVLRKDGS--YRWHTVLGEPVLDADNKIV--KWVGAFTD 929

Query: 187  NRVDNDP--------RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIF------------- 225
               +            A  + L + +  L + ++ +  + +E  D               
Sbjct: 930  IHTEKAFTNELEQQVTARTRELSQMYESLKKSEERYHLMVEEVQDYAILYLSRDGIVENW 989

Query: 226  -SQQSPPPHLRMKNKVSSLTEYYAHKDDV---LKTEKYPLLTSEESSLPEQEDFHTINLN 281
                      + +         +   +D    + +    L   +  ++ +       N  
Sbjct: 990  NIGAEKIKGYKAQEITGKYFGIFYTPEDQKNNIPSTLLELAREKGRAVQQGWRVRK-NGT 1048

Query: 282  QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNL 341
             +        + N   E   +    +  +     D+   L    +++         +  L
Sbjct: 1049 LFWASVVITAIHNKDNEVIGFSKVTHDLTEKKRADDKIKLNALELEQ--------KNAEL 1100

Query: 342  FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401
             + N   L    Y S  D++          +  +               +    A+ R+ 
Sbjct: 1101 EHMNKE-LQSFAYISSHDLQEPLRKIQTFASQIIEKEFENLSDSGKDKFQRMQNAAKRMQ 1159

Query: 402  TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
            T+  +      +++      ++  E    + I  E  +       +  E+ Q  +++E+
Sbjct: 1160 TLIHD-----LLSYSRTNIQDRTFEQTSLSKIIEEVKED------LREELEQKNAVIES 1207


>gi|293372986|ref|ZP_06619355.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f]
 gi|292632054|gb|EFF50663.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f]
          Length = 623

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 112/524 (21%), Positives = 202/524 (38%), Gaps = 32/524 (6%)

Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSV 357
             E     +  S        E L        PI   +Y   G L   N   L +   +  
Sbjct: 112 ISEVQDGPDMASAYQALQYSERLLSNIFKYLPIGIELYDMDGVLVDLNDKELEMFHIEKK 171

Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
           +D+         +   ++ +         +          +     Q     ++ +    
Sbjct: 172 EDVLGINIFDNPIFPKEMKERLKKNEDADFTFRYDFSKVGSYYQNTQKQG--TIDLMTKV 229

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
               N   + +    I  +  +T +   K++        + +    G A  N    ILS 
Sbjct: 230 TTLYNSEHQPINYLLINADKTETTVAYNKIQEFEEFFELVGDYAKVGYAHFN----ILSG 285

Query: 478 NRAVSKLFGYPVEDILRKPFTVFL------EQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
           +    K +   V +    P +           +  +++  +L +     L   L K    
Sbjct: 286 HGYAQKSWYRNVGEADETPLSDIFGTYRHFHPDDRALLIRFLDDARK-GLTTKLSKEMRV 344

Query: 532 STKEEKLLSLRII--IKKLPFSSCYSLTMH---DISEWKQEKNKLSHAKKIAEKESSHKS 586
             ++       +   +KK          +    DI+E K+ +  L  A+  AE     KS
Sbjct: 345 LREDGTYTWTHVNLLVKKYAPQDRIIEIISINYDITELKRTEEMLVKARDKAEASDRLKS 404

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
            FLA +SHEIRTPL AI+GFS ++ +             Y + I  +  L+L+++ND++D
Sbjct: 405 AFLANMSHEIRTPLNAIVGFSSLLTSTENAA----EKELYNSLIGHNNKLLLNLINDVID 460

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706
           +SKIESG + L  + V+L E + E+++          + + T++  +   +  D   +KQ
Sbjct: 461 LSKIESGYLELRPDWVNLTELLDESVAEYAHQVPS-GVELLTNYPAHDSLVELDKLRIKQ 519

Query: 707 IALNILSNAIHFTPSGGQIIISTTHT-SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           I  N LSNA+  T +G    +   +   ++ V + V+DTG G+    LEK  + F ++ +
Sbjct: 520 ILSNFLSNALKNTTTG---HVEVFYEVDHQSVRIGVKDTGRGIPQNMLEKIFERFEKLDS 576

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
                 +G GLGLP+ K +V+   G+  + S    GT   I  P
Sbjct: 577 F----AQGAGLGLPICKLIVEKMNGRILVDSQLGIGTTFIIELP 616


>gi|254480157|ref|ZP_05093405.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [marine gamma proteobacterium HTCC2148]
 gi|214039719|gb|EEB80378.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [marine gamma proteobacterium HTCC2148]
          Length = 509

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 75/225 (33%), Positives = 118/225 (52%), Gaps = 3/225 (1%)

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGP--LGNPRYIEYANYIDRSGNLVLDIVNDLL 645
           FLA VSHE+RTPL AIIG+SE++ ++      +  P++ +  + I RSG  +L ++ND+L
Sbjct: 275 FLANVSHELRTPLNAIIGYSEMLHDELSDEREVDRPQFQQDLDKIIRSGRQLLTLINDIL 334

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
           D+SKIE+GKM LH E     E + +A   +     E+   +      ++P +  D    +
Sbjct: 335 DLSKIETGKMALHCETFQPGELLEQACDSITPQLRERNNQLEKPDFESLPTLYNDAAKFR 394

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIP 764
           QI  N+LSNA  FT +G   +++T    +   V + VRDTG+GM   +  +  + F Q  
Sbjct: 395 QIFTNLLSNACKFTNAGYITVLATEPEEHPGWVEIAVRDTGIGMNEDQQSQVFEAFVQAD 454

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            S      GTGLGL + +       G   + S P  G+   ++ P
Sbjct: 455 ASTSANYGGTGLGLAICRDYCQLMGGTIRVESQPGNGSTFTVLLP 499


>gi|330508892|ref|YP_004385320.1| histidine-protein kinase [Methanosaeta concilii GP-6]
 gi|328929700|gb|AEB69502.1| histidine-protein kinase [Methanosaeta concilii GP-6]
          Length = 925

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 75/280 (26%), Positives = 140/280 (50%), Gaps = 35/280 (12%)

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHK-------------------------SDFLARVSH 594
           +I+E ++ + ++    +  E+    +                         S+FL  +SH
Sbjct: 362 EIAERRKAEEEVKRLNEDLEERVRLRTAELEATNKDLLVAKAKAEAAARAKSNFLDNMSH 421

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           EIRTP+ AIIG + +++    G    P   ++ + I +SG+ +L I++D+LD SKI+  K
Sbjct: 422 EIRTPMNAIIGMARLLQ----GTDIKPEQRDFLDTIQKSGSALLAIIDDILDYSKIDGDK 477

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILS 713
           M L   P  L   + +++ LV + A+EK + +     N++P RI+ D+  ++Q+ +N+L 
Sbjct: 478 MELVNVPFDLQICIEDSLDLVAIKASEKGLELAYLLENDVPKRIVGDVNRLRQVLVNLLG 537

Query: 714 NAIHFTPSGGQI-IISTTH----TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
           NA+ FT  G  +  +S+          E+   VRDTG+G++     +  + F Q+ +S+ 
Sbjct: 538 NAVKFTDRGDVVLKVSSRRLEGSDDKVELHFAVRDTGIGISPENQSELFQSFTQVDSSKT 597

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
               GTGLGL +++ +V+   G+ +  S    G+     F
Sbjct: 598 RSYGGTGLGLAISRGIVERMGGRIWAESEIGTGSSFYFDF 637


>gi|297202791|ref|ZP_06920188.1| two-component system sensor kinase [Streptomyces sviceus ATCC 29083]
 gi|297148197|gb|EFH28881.1| two-component system sensor kinase [Streptomyces sviceus ATCC 29083]
          Length = 1823

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 120/739 (16%), Positives = 257/739 (34%), Gaps = 58/739 (7%)

Query: 120  DVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFR 179
            D++  + I+    +  L    NT     TL         V  ++    I        G  
Sbjct: 890  DLTRTVTIEARGEVAQLADTFNT--MVKTLSSFADQVTKVAREVGTDGILGGQARVPGVA 947

Query: 180  GFGIVHVNRVDNDPRALGKRLDKKFSHL---HEIKKGHSSVEKEKYDIFSQQSPPPHLRM 236
            G           +  A       +   +      K   +            +       M
Sbjct: 948  G--TWKDLTESVNQMASNLTGQVRNIAMVTTAIAKGDLTKKIDIDARGEILELKTTINTM 1005

Query: 237  KNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTI-----NLNQYTKKQYFGT 291
             +++SS  E        + TE    L  +         +  +      +     +Q    
Sbjct: 1006 VDQLSSFAEEVTRVAREVGTEGQ--LGGQARVRDVDGTWRDLTESVNEMAGNLTRQVRAI 1063

Query: 292  LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLL 351
             +  +  +   L+ +     S    E ++   + +             +    N + +  
Sbjct: 1064 ARVATAVTRGDLNLKIDVDASGEIQELQDYINKMIANLRDTTIANKEQDWLKGNLARISA 1123

Query: 352  TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH-TIQWNRENS 410
                  D +E    L      P ++  +    V +   D   ++A A     ++      
Sbjct: 1124 LMQGRRD-LEDVASLIMSELTPVVTAQHGAFFVAMPLLDGKDVSAEAEEQYELRMLGSYG 1182

Query: 411  LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470
             +M  +P                +   +        ++I       + EA    + ++  
Sbjct: 1183 YSMGSMPTSFRPGEALIGTAAEEKRTILVENAPSGYLKISS----GLGEAPPAQVIVLPV 1238

Query: 471  --EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY-----LTEILSLDLRQ 523
              EG +L       +L  +     ++K F   + +   + +N          +L      
Sbjct: 1239 LFEGKVLGV----IELASFTPFTQIQKDFLNQIAEMIATSVNTISVNTKTEVLLKQSQEL 1294

Query: 524  TLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT-MHDI----SEWKQEKNKLSHAKKIA 578
            T +     +  E +  +L+    +L   +        DI    +E ++ +  L    +  
Sbjct: 1295 TEQLRERSAELENRQKALQASNAELEEKAELLAQQNRDIEVKNTEIEEARQVLEERAEQL 1354

Query: 579  EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
                 +KS+FLA +SHE+RTPL +++  ++++ +     L  P+ +E+A  I  +G+ +L
Sbjct: 1355 AVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNADSNLT-PKQVEFAETIHGAGSDLL 1413

Query: 639  DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RI 697
             ++ND+LD+SK+E+GKM++    ++L + V    +  +    EK + +    +  +P  +
Sbjct: 1414 QLINDILDLSKVEAGKMDVSPTRIALVQLVDYVEATFRPLTAEKGLDLSVRVSPELPATL 1473

Query: 698  LADLRSVKQIALNILSNAIHFTPSGGQIII--------------------STTHTSNEEV 737
              D + + Q+  N+LSNA+ FT SG   ++                    S      + +
Sbjct: 1474 HTDEQRLLQVLRNLLSNAVKFTDSGAVELVIRPAGRDVPVAIREQLLEAGSLRDPDADLI 1533

Query: 738  ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
               V DTG+G+   ++    + F Q   +   +  GTGLGL +++ +     G+ +  S 
Sbjct: 1534 AFSVTDTGIGIAASKMRVIFEAFKQADGTTSRKYGGTGLGLSISREIAQLLGGEIHAQSE 1593

Query: 798  PAKGTLIEIIFPLYDTSHP 816
            P +G+   +  PL+ +  P
Sbjct: 1594 PGRGSTFTLYLPLHPSELP 1612


>gi|75910892|ref|YP_325188.1| GAF sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
 gi|75704617|gb|ABA24293.1| GAF sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
          Length = 1917

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 82/373 (21%), Positives = 158/373 (42%), Gaps = 35/373 (9%)

Query: 456  SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
            +  +  ++ IAI+         N   + +     E++L++  ++  E  T         +
Sbjct: 1133 TFFDQLTESIAIV--------LNTIAASM---RTEELLKQSQSLAEELQTQQSELRETNK 1181

Query: 516  ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK----- 570
             L    +       L      +   L+    +L   +          E K  + +     
Sbjct: 1182 RLEQQAQSLKASEDLLR---GQQEELQQTNAELEEKAELLAIQKKEVERKNREIEQARRS 1238

Query: 571  LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
            L    +     S +KS+FLA +SHE+RTPL +++  ++++ +   G L   + +EY+  I
Sbjct: 1239 LEEKAEQLALSSRYKSEFLANMSHELRTPLNSLLILAKLLTDNVDGNLT-AKQVEYSQTI 1297

Query: 631  DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
              +GN +L ++ND+LD++KIESG M++H  P+ L E   +        A  K +      
Sbjct: 1298 YSAGNELLALINDILDLAKIESGTMSIHATPIPLSELAEQIERGFGQVAQNKGLTFAVEL 1357

Query: 691  ANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE------------- 736
            A  +P  +  D++ ++Q+  N+LSNA  FT  G ++ +                      
Sbjct: 1358 APELPTTVNTDIKRLQQVLKNLLSNAFKFTERG-EVRLKIEVAKPGWNSNQQPLNSAQNV 1416

Query: 737  VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
            +   V DTG+G+   + +   + F Q   +   +  GTGLGL +++ +     G+  + S
Sbjct: 1417 IAFAVSDTGIGIAADKQKIIFEAFQQADGTTSRKYGGTGLGLSISREIAHLLGGEIKLTS 1476

Query: 797  TPAKGTLIEIIFP 809
             P +G+      P
Sbjct: 1477 YPGQGSTFTFYLP 1489


>gi|148266231|ref|YP_001232937.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter
           uraniireducens Rf4]
 gi|146399731|gb|ABQ28364.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter
           uraniireducens Rf4]
          Length = 359

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 66/356 (18%), Positives = 160/356 (44%), Gaps = 31/356 (8%)

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           ++++   G+  +   G +   NR    +       +L K   +         +   + ++
Sbjct: 29  LMDSVGIGVIFVETSGRLTLINRKAEAILQASGSSVLGKRVDML-------PLRTAIYKV 81

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHA 574
           LS D  +T  ++++    +  +++++      P          + D++E K+EK      
Sbjct: 82  LSEDCSETPVEMSI----DGAVITVKSSELYAPDGEILGEMFELRDVTEDKKEK------ 131

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
                     + + +A ++H++++PLT ++G+ + +K +    +           +DRS 
Sbjct: 132 --------RQREEIVAMMTHDLKSPLTVLMGYVQTLKGEMPQKIDIS-LQPCLKEMDRSA 182

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
             +L ++ D+LD  ++E G + ++     +   +          A  +   +  + +  I
Sbjct: 183 LKLLAMIEDVLDAYRLEVGLLQINCAVCDIGALLDGCCCDGLREAQARGSNLTCNISEGI 242

Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELE 754
           P +  D + + ++  N++ NA+ FTP  G + ++     + +V + V+DTG+G+   ++ 
Sbjct: 243 PPLKVDGKQLSRVFANLIGNALKFTPRRGSVTVTAEVRED-KVFVSVKDTGIGIPQKDVP 301

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           +    + +  +S     +GTGLGL ++KA+V+A+ G   + S   +G+   +I PL
Sbjct: 302 RIFNKYFR--SSAATGFKGTGLGLTISKAIVEAHSGTIEVESVEGEGSCFSVIIPL 355


>gi|256005870|ref|ZP_05430818.1| histidine kinase [Clostridium thermocellum DSM 2360]
 gi|255990174|gb|EEU00308.1| histidine kinase [Clostridium thermocellum DSM 2360]
 gi|316941556|gb|ADU75590.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium thermocellum DSM 1313]
          Length = 463

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 73/240 (30%), Positives = 123/240 (51%), Gaps = 7/240 (2%)

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           L++  +        K+DF+A +SHE+RTPLT+I+G+   I +            E  + I
Sbjct: 231 LNYMAQEVANHQKMKNDFIASISHELRTPLTSIMGWIITINSGDID--SKEELKEGLDII 288

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
           +R    + ++V++LLD SK ++G + L    V+L E +      ++  A  K I +    
Sbjct: 289 ERESKRLAELVDELLDFSKFDAGIITLRKSVVNLGELLKYIKRQMEPRAERKGITMTIDV 348

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
             ++P I AD   +KQ+ +NI+ N+  FT  GG I I      N  V++R+ D+G G+  
Sbjct: 349 DEHLPLIEADENRLKQVFINIIDNSFKFTQKGGYIDIIGRKNENG-VLIRIEDSGCGIPE 407

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            +L +  + F +  N       G+GLGL +   +V  + GK  I ST  KGT +++I P+
Sbjct: 408 EDLPRVKQRFFKGSNVVS----GSGLGLAICDEIVRLHNGKIDIESTVGKGTRVDVILPV 463


>gi|163852776|ref|YP_001640819.1| PAS sensor protein [Methylobacterium extorquens PA1]
 gi|163664381|gb|ABY31748.1| PAS sensor protein [Methylobacterium extorquens PA1]
          Length = 678

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 81/530 (15%), Positives = 178/530 (33%), Gaps = 39/530 (7%)

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPI--PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIA 363
                      + ++     V+       + +   G +   NP       Y + + I   
Sbjct: 24  VRATKAIEAAADRDDRYRLLVEAIVDYAIYMLDPRGYIASWNPGAQRFKGYTTDEIIGE- 82

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
              S    A   + +   + + +  ++            ++ +  + +    +     ++
Sbjct: 83  -HFSRFYTAEDRATDLPTRALHIAATEGR---FEQEGWRVRKDG-SLMWAHVLIDPIRSE 137

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNRAVS 482
             + +    I  +  + +  +  +     +   +++   D  I +++ +G + S NR   
Sbjct: 138 DGQLVGYAKITRDLSERKATQEALRQSEQRFRLLVQGVQDYAIYMLDPQGKVSSWNRGAQ 197

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
           +  GY   +I+ + F+ F      +        + +       E       K+       
Sbjct: 198 RFKGYTDAEIIGEHFSRFYTDEDRATDLPT-RALRTAADEGRFEAEGWRVRKDGTRFWAH 256

Query: 543 IIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKES--SHKSDFLARVSHEI 596
           ++I  +       +       DI+E +  + +L   +    +             V+H+ 
Sbjct: 257 VVIDAIRGDHGELVGFAKITRDITERRNVQQELEATRARFIQSQKMEAIGQLTGGVAHDF 316

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
              L  ++G    +  +R     +P+  +      ++      +   +L  ++    +  
Sbjct: 317 NNLLAVVLGNL-SLARKRLP--NDPKLRQLIENSIQAAERGAALTKRMLAFAR----RQE 369

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716
           L   P+++ + V     L+Q   +   IL+ T F   +P   AD   ++   LN+  NA 
Sbjct: 370 LETGPINVPDLVRGMAELLQRSISS-TILVNTQFPLQLPLAFADASQLELALLNLTVNAR 428

Query: 717 HFTPSGGQIIISTTHT-----------SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
              P  G I I+                   V L V DTG GM    L KA +PF     
Sbjct: 429 DAMPESGTITIAAREERVGTDEIAGLAPGHYVCLSVTDTGTGMDAETLAKATEPFFTTKG 488

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
                G+GTGLGL +     + + G+  + S+   GT  E+  P  +  H
Sbjct: 489 ----VGKGTGLGLSMIHGFAEQSGGRLVLKSSLGSGTTAELWLPAAEGDH 534



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/253 (8%), Positives = 71/253 (28%), Gaps = 12/253 (4%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI--DPNNHIGDLLKRQNTW 143
            + +D  GY+   +    +  G    ++IG              D       +   +  +
Sbjct: 52  IYMLDPRGYIASWNPGAQRFKGYTTDEIIGEHFSRFYTAEDRATDLPTRALHIAATEGRF 111

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +      +G+ ++  + +   PI S + +  G+    I          +   ++ +++
Sbjct: 112 EQEGWRVRKDGSLMWAHVLID--PIRSEDGQLVGYAK--ITRDLSERKATQEALRQSEQR 167

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
           F  L +  + ++    +     S  +           + +   +  +    +     L T
Sbjct: 168 FRLLVQGVQDYAIYMLDPQGKVSSWNRGAQRFKGYTDAEIIGEHFSRFYTDEDRATDLPT 227

Query: 264 SEESSLPEQEDFHT------INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
               +  ++  F         +  ++        ++ +  E   +       +      +
Sbjct: 228 RALRTAADEGRFEAEGWRVRKDGTRFWAHVVIDAIRGDHGELVGFAKITRDITERRNVQQ 287

Query: 318 GENLTPETVDKCP 330
               T     +  
Sbjct: 288 ELEATRARFIQSQ 300



 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/248 (6%), Positives = 52/248 (20%), Gaps = 2/248 (0%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + +D  G +   +    +  G    ++IG              +     L    +    
Sbjct: 180 IYMLDPQGKVSSWNRGAQRFKGYTDAEIIGEHFSRFYTDEDRATDLPTRALRTAADEGRF 239

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +   W +          +    I   + E  GF    I        + +   +    +F 
Sbjct: 240 EAEGWRVRKDGTRFWAHVVIDAIRGDHGELVGFAK--ITRDITERRNVQQELEATRARFI 297

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
              +++          +D  +  +         +     +    +      +      + 
Sbjct: 298 QSQKMEAIGQLTGGVAHDFNNLLAVVLGNLSLARKRLPNDPKLRQLIENSIQAAERGAAL 357

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
              +        +             +    + S       N            + +   
Sbjct: 358 TKRMLAFARRQELETGPINVPDLVRGMAELLQRSISSTILVNTQFPLQLPLAFADASQLE 417

Query: 326 VDKCPIPF 333
           +    +  
Sbjct: 418 LALLNLTV 425


>gi|299145534|ref|ZP_07038602.1| two-component system histidine kinase [Bacteroides sp. 3_1_23]
 gi|298516025|gb|EFI39906.1| two-component system histidine kinase [Bacteroides sp. 3_1_23]
          Length = 500

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 98/515 (19%), Positives = 180/515 (34%), Gaps = 59/515 (11%)

Query: 323 PETVDKCPIPFFVYSHGN-LFYANP-SFLLLTKYKSVDDIEIAG-------------GLS 367
            + ++  P    +      +   N  +   L  + SV+ +                  LS
Sbjct: 11  DDLLNILPDGVIILDINREVIQLNQQALTELHVHSSVNAMMPLPTNKIFKLLNKKEDILS 70

Query: 368 TLLDAPKLSDNN---AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
           T+L+                M  + D T         T++      + + F         
Sbjct: 71  TILEEIHQGKKVYSLPEHTFMQEQVDYTQFPIRGEFATMENEEGEKIILFFFRNITVELT 130

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
            E +    ++   +         +I   +              ++             + 
Sbjct: 131 QEYILNTALQRTRIYPWYY----DISRSEF------------TLD---------DRYFEH 165

Query: 485 FGYPVED---ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
            G P  +   +  + +   +  +    M       LS +              +      
Sbjct: 166 LGIPAGENNTLTMEEYVNMIHPDDRQTMADAFVVQLSGNTTFDKTVPFRLRRGDGTWEWF 225

Query: 542 RIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
                 +   S            I E+K  +N L  A+K AE+    K  FLA +SHEIR
Sbjct: 226 EGQSTYIANISGHPYRLVGICLSIQEYKDIENTLIEARKKAEESDRLKMAFLANMSHEIR 285

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TPL AI+GFS+VI +  +  L      ++   I  +   ++ +++D+LD+SKIES  +  
Sbjct: 286 TPLNAIVGFSDVIGST-YDELSEEERADFVRLISINSEHLVRLIDDILDLSKIESNTIKF 344

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
            +   SL   + +     Q+  N   I I+    ++   I  D   +KQ+  N ++NA  
Sbjct: 345 TYSNYSLKSIMKDIEKE-QVVKNVPEIEIKAILPDDDIYITTDATRLKQVICNFINNARK 403

Query: 718 FTPSGGQIIIS--TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           FT  G  I         +++ V L V DTG G+     ++    F ++   +    +GTG
Sbjct: 404 FTEEG-YIHFGFMVNPENDDSVCLFVEDTGEGIPQECQKEIFDRFYKVNTFK----QGTG 458

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           LGL + K +V+   G   + S   +G+   +  PL
Sbjct: 459 LGLSICKTIVEHLQGSISVVSEVGRGSRFTVTLPL 493


>gi|257094403|ref|YP_003168044.1| multi-sensor hybrid histidine kinase [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257046927|gb|ACV36115.1| multi-sensor hybrid histidine kinase [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 884

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 101/596 (16%), Positives = 199/596 (33%), Gaps = 44/596 (7%)

Query: 242 SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301
            +    A       +E+    T E   + +      +      ++ +   L      +  
Sbjct: 16  GVLAGIAQWTAFQVSEQVLRTTVEAREIDKVRTVGRVVTGLIAQQSWRSQLAARLTAARN 75

Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSV--- 357
            L        +        +    +    +    +     +             +S    
Sbjct: 76  GLGRSLAKRQADSEQTWRAVLDGALPATEVDLMELADAQEIVVYRAHDPQRHGDQSATWG 135

Query: 358 --DDIEIAGGLSTLLDAPKL-----SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
             + +E A  + + LD   L         A   V+   +    + +   L ++  +    
Sbjct: 136 IFEALEGAEVIVSSLDEAGLSLLAIEPVRAEGRVVGALTAGVRLDSDL-LKSLSQDLGAE 194

Query: 411 LAMTFIPFEKANQFPEN--MPQNGIEPEDVDTRINKRKMEIEVMQLCS-----ILEATSD 463
           L +            E      +    E +  +I   + E+   Q  +     I++    
Sbjct: 195 LVLVSSAGATLATSEEAPNARDSAAIQEALTQKIPIYRHEMASHQTRAYLPLTIVDNAYV 254

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
            I  ++             +L     E        + L       +           LR+
Sbjct: 255 VIVTLDS--------TRSYQLLAEASERSAFYTLAIVLVSMLLGFLLLRRLLNPLRSLRR 306

Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW-KQEKNKLSHAKKIAEKES 582
             E   +  T         I              +  +++   +  + L+ AK  AE  +
Sbjct: 307 KAEASAMELTGSG------ISADSGNEVQAVVEVLETLTDRLVRRNSDLAEAKDAAEAAN 360

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
           + KS FL+ +SHEIRTPL  I+G +EV++        N     Y   I  +G  +  ++ 
Sbjct: 361 TAKSQFLSNMSHEIRTPLNGILGMAEVLERTPL----NNEQARYLRAISSAGQALHGLLG 416

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN-NIPRILADL 701
           D+LD++KIE+GK+ L      L+  + +     +  A+     +   F       +  D 
Sbjct: 417 DILDLAKIEAGKIVLEDIDFDLESLLVQLAETFRELASASGKSLTADFVGVARLCLRGDP 476

Query: 702 RSVKQIALNILSNAIHFTPSGG----QIIISTTHTSNE-EVILRVRDTGVGMTNYELEKA 756
             ++Q+  N+L+NA+ FT  GG     + +++        +   VRDTG+G+      + 
Sbjct: 477 TRLRQLLSNLLTNAVKFTERGGITLNVVRLASRPEDARVWLRFSVRDTGIGIAPEAAARL 536

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
            +PF Q   S   R  G+GLGL + K +V+   G   + ST  +G+      P  +
Sbjct: 537 FQPFVQADQSTTRRFGGSGLGLVICKQLVELMGGSISVDSTVNQGSTFTAELPFAE 592


>gi|302662555|ref|XP_003022930.1| hypothetical protein TRV_02917 [Trichophyton verrucosum HKI 0517]
 gi|291186903|gb|EFE42312.1| hypothetical protein TRV_02917 [Trichophyton verrucosum HKI 0517]
          Length = 2406

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 73/251 (29%), Positives = 134/251 (53%), Gaps = 12/251 (4%)

Query: 565  KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
            K  + + +H  K+ E  +  KS FLA +SH++RTP+T +IG SE++K  +     +P+  
Sbjct: 1866 KIAEVEANHNVKLKEDAAKAKSIFLANISHDLRTPMTGVIGLSELLKATKL----DPKQD 1921

Query: 625  EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
             Y   I    + +L ++ND+LD SK+E+GKM +   P++L + ++E +  ++    EK +
Sbjct: 1922 VYVESIRVCADTLLTLINDILDFSKLEAGKMKVSIVPINLRQTIAEVVRALRYTHREKGL 1981

Query: 685  LIRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVI 738
                   +  P   ++ D   + QI +N+LSN+  FTP+G  + +      +      V 
Sbjct: 1982 NTIEDLDSIDPDLLVMGDPVRLHQIFMNLLSNSYKFTPAGS-VTVRAIVEEDTPEKIRVT 2040

Query: 739  LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA-NMGKFYIFST 797
             +V DTG+G++  +L +  +PF Q  +S      G+GLGL + KA+++    G+ ++ S 
Sbjct: 2041 CKVADTGIGISEEQLVRLFRPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGRIWLQSK 2100

Query: 798  PAKGTLIEIIF 808
              +GT +    
Sbjct: 2101 EGEGTTVTFTL 2111


>gi|91224745|ref|ZP_01260005.1| putative sensor histidine kinase [Vibrio alginolyticus 12G01]
 gi|269964372|ref|ZP_06178614.1| putative sensor histidine kinase [Vibrio alginolyticus 40B]
 gi|91190291|gb|EAS76560.1| putative sensor histidine kinase [Vibrio alginolyticus 12G01]
 gi|269830869|gb|EEZ85086.1| putative sensor histidine kinase [Vibrio alginolyticus 40B]
          Length = 785

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 79/303 (26%), Positives = 140/303 (46%), Gaps = 8/303 (2%)

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL-TMHDISEWKQEKN 569
             L       +  +  ++   +  E +   L + I  +   S +   + H +   KQ   
Sbjct: 195 ELLDHTYIEFVESSEHRLLNIAQSEARFTWLFVFIAVMFLVSAFVYQSHHRMHNLKQLNL 254

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           ++  A+  AE+ +  KS+FLA +SHE+RTP+  ++G S++I  +   P       E+   
Sbjct: 255 EIEEARNKAERAAKAKSNFLAAMSHELRTPMNGVLGLSQMIAEETKEPTT----KEHIRV 310

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I  SG  ++ I+ND+LD SK+E  K+        LD+ +S   S ++   +EK I +   
Sbjct: 311 ILDSGQHLMTILNDILDFSKVEENKLEFEQAKFKLDQVLSPVCSAIKPLVDEKNIELILE 370

Query: 690 FA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL-RVRDTGVG 747
              +       D   ++QI  N+  NA+ FT  G  +++ T    + ++++ RV DTG+G
Sbjct: 371 NEVSEYTEFTGDCARLRQILFNLAGNAVKFTNEG-HVLVRTELDESNQLLVMRVSDTGIG 429

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           +   + E     F Q  +S   R  GTGLGL + K + D   G   + S    G+   + 
Sbjct: 430 IAPDKHEHIFNSFEQADSSTTRRFGGTGLGLAIVKKLTDLMGGHITLKSIEGVGSQFIVE 489

Query: 808 FPL 810
            P+
Sbjct: 490 LPI 492


>gi|27367859|ref|NP_763386.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           vulnificus CMCP6]
 gi|27359432|gb|AAO08376.1| Sensory box sensor histidine kinase/response regulator VieS [Vibrio
           vulnificus CMCP6]
          Length = 1217

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 89/374 (23%), Positives = 165/374 (44%), Gaps = 15/374 (4%)

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
           E E   L  I++  ++ + I + +G ++ +N +      Y               Q +  
Sbjct: 541 EKEKQWLTQIIQELNNKVFIHDDKGQLVLSNCS-----EYLKGHCTNCQIKNAATQISLV 595

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL-TMHDISEWKQ 566
                + ++LS    +   +      + E +   R  I+ L     + L  + D++  K+
Sbjct: 596 GDFEEVQQVLSGKRIKEYSQTVNCDLQIEHIYRERKAIRSLDHRKQFVLTVLQDVTAQKE 655

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
            +  L  A+  A+     +  FLA +SHE+RTPL A  G    + +       + R  E 
Sbjct: 656 REAALIAAQHEAQSAVKARERFLATMSHELRTPLAATYG----LLDLVATHSTSERDKEL 711

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
                +S N +  +V+++LD SK+E+G++ +H     L   +S+ +   +  AN K +  
Sbjct: 712 VLRAKQSLNHLNLLVDEVLDYSKLEAGELQIHPAKNELLRLLSQTLRGFEAKANSKGLDY 771

Query: 687 RTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
             +    ++   + D     QI  N++SNAI FT  G  I ++        ++L ++DTG
Sbjct: 772 TVNIIPFSLRWAMIDDLRFNQIVSNLISNAIKFTEQG-DITLTAQVVDE-RLLLTIKDTG 829

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +GMT  +L    KPF Q  +S   +  GTGLGL + + ++    G   + S    GT ++
Sbjct: 830 IGMTQEQLANIFKPFVQADDSITRQFGGTGLGLAIVEQLLKQMGGHIALHSALNVGTQVD 889

Query: 806 IIFPLY--DTSHPH 817
           I  PL   + ++P 
Sbjct: 890 IELPLTLCEGAYPE 903


>gi|17546254|ref|NP_519656.1| phosphate regulon two-component sensor kinase transcription
           regulator protein [Ralstonia solanacearum GMI1000]
 gi|17428551|emb|CAD15237.1| probable phosphate regulon two-component sensor kinase
           transcription regulator protein [Ralstonia solanacearum
           GMI1000]
          Length = 443

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 76/405 (18%), Positives = 158/405 (39%), Gaps = 37/405 (9%)

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDT-----RINKRKMEIEVMQLCSILEATSDGI 465
                +      + P  +   G     +       R    ++E +  +    ++A+ +G+
Sbjct: 52  RLWRVLESPAYGEIPSALGLWGEVYYRLHRLMKGWRTQVLQVEQQHSRFIQAIQASPNGV 111

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
            +++ E  I   N    + FG   +  LR+  T  + +        ++  +   +  + L
Sbjct: 112 LMLDGEDQIEWCNAVAEEHFGLSAKRDLRQRITHLIRRP------EFVRYLARGEFEEPL 165

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
               +G  K+  ++S +++           L   DI++ +  +              + +
Sbjct: 166 TMRDMGPHKQ-SIVSAQVLPY---GEDRKLLVSQDITKLENTE--------------AMR 207

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
            DF+A VSHE++TPLT + GF E +++    PL       Y + +      +  +V DLL
Sbjct: 208 RDFVANVSHELKTPLTVLSGFLETVRD---LPLSEDDKRRYLDMMHVQATRMQHLVEDLL 264

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLY-ANEKRILIRTSFANNIPRILADLRSV 704
            ++ +E         PV +   + +     +   A    I +    +     +      +
Sbjct: 265 ALATLEGNSEPPSITPVPMQRVMLQLQHDAEALSAGRHAISMTCDAS---VSVCGAELEL 321

Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764
                N++SNAI +TP GG+I +  +       +  V DTG+G+    + +  + F ++ 
Sbjct: 322 LSAFSNLVSNAIRYTPEGGRISLDWSARE-GHAVFSVTDTGIGIAPEHIPRLTERFYRVD 380

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            S+     GTGLGL + K ++  +     + S   KG+     FP
Sbjct: 381 RSRSRDTGGTGLGLAIVKHVLSRHGADLQVVSERGKGSTFRASFP 425


>gi|160936663|ref|ZP_02084030.1| hypothetical protein CLOBOL_01554 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440454|gb|EDP18199.1| hypothetical protein CLOBOL_01554 [Clostridium bolteae ATCC
           BAA-613]
          Length = 970

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 91/399 (22%), Positives = 174/399 (43%), Gaps = 27/399 (6%)

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQ---LCSILEATSDGIAIINRE-GIILSTNRAVSK 483
           +    I       +  + +      +     ++         +       +   +  +  
Sbjct: 292 IGAVAIANLVTGRQSMREEARQREYREKLFRNLSANIDFVFLLYTPSTQKVELVSDNLPV 351

Query: 484 LFGYPVEDILRKP---FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE--KL 538
           L G   + +  +P   F+           N +L   L+   +Q   +  +G    E  + 
Sbjct: 352 LLGITAKQVQERPKLVFSASGMAPDDPAGNSFLDGTLN---KQVTREAMVGDGPNEVKRW 408

Query: 539 LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
            ++ +I         Y     + ++    +  L+ A K A+  +  ++ F + +SH+IRT
Sbjct: 409 FAVHMIPA---DYGQYLAVFQETTKEHNMREHLADALKQAQNSNQARTAFFSSMSHDIRT 465

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
           P+  IIG + V  N         +     N I  +   +L ++N++LD+S+IESGK++L 
Sbjct: 466 PMNGIIGMTNVALNSLDNM---EKVESCLNKITAASGHLLQLINEVLDMSRIESGKISLK 522

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTS---FANNIPRILADLRSVKQIALNILSNA 715
            E V L   ++  IS ++   ++KR           ++   +++D   +++I LN+LSNA
Sbjct: 523 EENVHLPSMMANLISFIRPDMDKKRQSFELKSQILEHD--TVISDGLHLQKILLNLLSNA 580

Query: 716 IHFTPSGGQII--ISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           + +T +GG I   I+ T+   + + LR  V D G+GMT   LE+   PF +  +S+  + 
Sbjct: 581 MKYTQAGGTISMQITETNVDADTIRLRFVVEDNGIGMTPEFLERVFAPFERAEDSRMSQA 640

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            GTGLGL + K++VD   G  Y+ S    G+   +  PL
Sbjct: 641 TGTGLGLAITKSIVDMMEGDIYVESEKDMGSRFTVELPL 679


>gi|149194248|ref|ZP_01871345.1| histidine kinase [Caminibacter mediatlanticus TB-2]
 gi|149135423|gb|EDM23902.1| histidine kinase [Caminibacter mediatlanticus TB-2]
          Length = 1023

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 79/238 (33%), Positives = 119/238 (50%), Gaps = 9/238 (3%)

Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
           K +E+ +  KS FLA +SHEIRTPL  I+GF E++K     P       EY + I +S  
Sbjct: 382 KKSEEATKAKSLFLANMSHEIRTPLNGILGFLEILKTTDLTP----EQEEYVDTISQSAK 437

Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695
            +L IVN++LDISKIES K+ +        +     + +    A+ K I   T  + N+P
Sbjct: 438 NLLQIVNNILDISKIESNKVTIEEIEFKALDEFESTLEIFATPASHKHIQYVTEISPNMP 497

Query: 696 RIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS----NEEVILRVRDTGVGMTN 750
            IL  D+  +K+I  N+++NAI FTP  G I +            ++   VRDTG+GM+ 
Sbjct: 498 SILKGDILKIKEIITNLINNAIKFTPENGIISVKILLQEIINNKAKIYFEVRDTGIGMSE 557

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            +  K  + F Q   S   +  GTGLGL + K+ ++       + S   KG+      
Sbjct: 558 AQKAKIFEAFTQADASVTRKYGGTGLGLTIVKSYLEMMGSHINVESEINKGSRFYFTI 615


>gi|91794039|ref|YP_563690.1| ATP-binding region, ATPase-like protein [Shewanella denitrificans
           OS217]
 gi|91716041|gb|ABE55967.1| PAS/PAC sensor signal transduction histidine kinase [Shewanella
           denitrificans OS217]
          Length = 432

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 81/380 (21%), Positives = 155/380 (40%), Gaps = 37/380 (9%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           R    ++   + +     EA  D   +++ E  IL  N+    + G+       +     
Sbjct: 87  RRRVGQLASLLGRFRQGAEALPDAAVVLDSEHNILWCNKLAQLILGFVWPQDNGQRIDNL 146

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
           +     S        + S   +Q L         + +LL +RI+           L   D
Sbjct: 147 IRHPDFSAY------LKSGAFQQPLA--LASPVSDARLLEIRIMAY---GDRQLLLIARD 195

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK--NQRFGPL 618
           I+   Q +                + +F+A VSHE++TPLT + G+ E+++   +   P 
Sbjct: 196 ITRIHQLE--------------GMRKEFVANVSHELKTPLTVLQGYLEIMQGMEEENSPK 241

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE-SGKMNLHFEPVSLDEAVSEAISLVQL 677
             P        + +    +  +V  LL +S+IE +  +NL    V +D+ + +     + 
Sbjct: 242 AKP-----LKLMQQQTERMQSMVEQLLALSRIEDASDINLS-SRVDMDKLMQQLKEEAKA 295

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737
            A      +  S+   +     D   ++   +N++SNAI +TP GG+I +S    +   +
Sbjct: 296 LAL-NNYQVDFSWDKGLNS-HGDELQLRSACINLISNAIRYTPPGGKITVSWRRVATGGL 353

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
              V DTG G+    + +  + F ++ N++  +  G+GLGL + K  +  +  +  I S 
Sbjct: 354 -FSVTDTGFGIAPQHISRLTERFYRVDNARSSKTGGSGLGLAIVKHALSHHHSELSIQSE 412

Query: 798 PAKGTLIEIIFPLYDTSHPH 817
            AKG+    + P +  S PH
Sbjct: 413 LAKGSTFSFVIPNHLLSSPH 432


>gi|300868138|ref|ZP_07112772.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC
           6506]
 gi|300333873|emb|CBN57952.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC
           6506]
          Length = 939

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 70/260 (26%), Positives = 134/260 (51%), Gaps = 25/260 (9%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  AK  A+  +  K++F+A +SHE+RTPL  I+G++++++        + +  +    
Sbjct: 451 ELKDAKIAADTANRAKTEFIANMSHELRTPLNGILGYAQILQ---PLKTTDEKVKDGLRI 507

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I + G+ +L ++ND+LDISKIE+ KM LH         +S  + + +L A +K I++   
Sbjct: 508 IYQCGSHLLTLINDILDISKIEAQKMELHPTDFHFPSFLSGVVEICRLKAEQKGIVLAYQ 567

Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG---QIII-------STTHTSNE--- 735
             N++P  I +D + ++Q+ +N+LSNAI FT  G    ++ +                  
Sbjct: 568 PQNSLPDSIRSDEKRLRQLLINLLSNAIKFTDEGRVDFKVEVIGTQECPQAELREKSSIT 627

Query: 736 -------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                  ++  ++ DTG+G+ + +LEK   PF Q+  +     +G+GLGL +++ +V+  
Sbjct: 628 NHQLPITKIRFQIEDTGIGINSEQLEKIFLPFEQVSEA-SRNHQGSGLGLAISQKIVELM 686

Query: 789 MGKFYIFSTPAKGTLIEIIF 808
                + S P  G+   +  
Sbjct: 687 GSTIKVKSQPGVGSTFLVEL 706


>gi|297588264|ref|ZP_06946907.1| two component sensor histidine kinase [Finegoldia magna ATCC 53516]
 gi|297573637|gb|EFH92358.1| two component sensor histidine kinase [Finegoldia magna ATCC 53516]
          Length = 568

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 81/364 (22%), Positives = 166/364 (45%), Gaps = 29/364 (7%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           ++E     + +I +   +G+ ++++   +LS N++   LFG        +PF      N 
Sbjct: 233 ELEERSTTIKTITDNMREGLILLDKNMNVLSVNKSAEFLFGASDSKYEGRPFISL---NR 289

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISEW 564
              ++  + +++S      +         +  LLS+ I       + +   L + D S+ 
Sbjct: 290 DLKIHSAIRDVISTKTAHHINIEM-----QGILLSMYIAPVLDEDNINGVLLFLVDESDK 344

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
            + +                + +F A VSHE+++PLT+I G++E+I+N    P       
Sbjct: 345 IKAE--------------KRRREFSANVSHELKSPLTSINGYAEMIENNMVSP---ENVS 387

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           ++A  I + G  +L+++++++ +SK++    N+     + ++ + E I   Q   + K+I
Sbjct: 388 KFATIIHQEGLRLLELIDNIIKLSKLDESGDNIEKGLFNPEKIIDEIIKSNQNKLDSKQI 447

Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744
            + T    N   I  +   +K++  N+++NAI +    G+I IS     N++  +   DT
Sbjct: 448 ELVTDLQENCL-IYGNENLIKEMIENLVTNAIKYNKISGKIKISI-FKENDKTKIICEDT 505

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G+      +  + F  +  S+  + E TGLGL + K +VD + G   + S    GT I
Sbjct: 506 GIGIAEKYQSRVFERFFVVDKSRSSQ-ESTGLGLSIIKHIVDIHNGSITLESKLDVGTKI 564

Query: 805 EIIF 808
            I  
Sbjct: 565 TITI 568


>gi|153838733|ref|ZP_01991400.1| tmao reductase sytem sensor tors [Vibrio parahaemolyticus AQ3810]
 gi|149747858|gb|EDM58738.1| tmao reductase sytem sensor tors [Vibrio parahaemolyticus AQ3810]
          Length = 723

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 75/242 (30%), Positives = 124/242 (51%), Gaps = 7/242 (2%)

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
           +  AE+ S  KS FLA +SHEIRTP+  ++G + ++ +    P+       YA  I+RSG
Sbjct: 460 RNEAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLMDSGLNPI----QKRYAEIINRSG 515

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
             +L I+ND+LD SKIE+G + +      L + V +   L+   A EK++L      +++
Sbjct: 516 KTLLAILNDVLDYSKIEAGHLEIRRLGFDLHQMVEDTFQLMNSRAQEKQLLFSYHIESDV 575

Query: 695 PRIL-ADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVILRVRDTGVGMTNYE 752
            R    D+  + Q+  N++ NAI FT  G   I +S       +V+  V DTG+G++  +
Sbjct: 576 SRYWKGDVTRISQVLNNLVGNAIKFTEDGEIDIYVSLNPEDESQVLFEVSDTGIGISKKD 635

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
            +     F Q       +  GTGLGL ++K +V+A  G   + S   +G+      PL +
Sbjct: 636 QKTLFDAFTQAEGGLN-QIGGTGLGLAISKRIVEAMGGVLEVDSEEGEGSRFWFSIPLEE 694

Query: 813 TS 814
           + 
Sbjct: 695 SE 696


>gi|254255011|ref|ZP_04948328.1| Signal transduction histidine kinase [Burkholderia dolosa AUO158]
 gi|124899656|gb|EAY71499.1| Signal transduction histidine kinase [Burkholderia dolosa AUO158]
          Length = 533

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 69/366 (18%), Positives = 152/366 (41%), Gaps = 21/366 (5%)

Query: 453 QLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
           +  +++E+ +D  + +++R GI+++ N    ++ GY  ++I+ + F+ F +    +    
Sbjct: 31  RFQTVVESVTDYAVFMLDRNGIVVTWNAGAERIKGYRADEIIGRHFSRFYQPGAIAAGRP 90

Query: 512 --YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWK 565
              L +          E+      K+       + +  +         +     D++E K
Sbjct: 91  SYVLEQAAKHGH---YEEEGWRVRKDGSAFWAFVTVTAVHDESGSLRGFIKITRDMTERK 147

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           +            E  +     F+A ++HE+R  L  +     V+++     L  P    
Sbjct: 148 RL--------DELEVATQRLDVFIATLAHELRNQLAPLQNTVGVLQSLPSSALV-PALAH 198

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
             +   R    ++ +V+DLLDI +I+S K+ L    V+L + V+ ++  +Q   + +   
Sbjct: 199 CRDVAGRQITQLVRLVDDLLDIGRIKSDKVTLDEASVNLRDVVTRSVDGMQAKLDARGQR 258

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +  +   +   +  D   + Q+  N+L NA  F+    +I +       +   +RV D G
Sbjct: 259 VDVTLPGSAVTVRGDDARLVQVLYNLLDNASKFSARNARIGVDVRV-DQDTAEIRVVDHG 317

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLI 804
           +G+    LE+    F Q   +      G GLGL +++ +V+ + G     S    +G+  
Sbjct: 318 IGIAPDALERVFGMFEQPGGAAGETSGGLGLGLAISRKLVELHGGSIAAESAGVGQGSTF 377

Query: 805 EIIFPL 810
            +  P+
Sbjct: 378 VVRLPI 383



 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/249 (7%), Positives = 60/249 (24%), Gaps = 9/249 (3%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNTW 143
            + +D +G +   +    +  G  A ++IG           I       + +   +   +
Sbjct: 44  VFMLDRNGIVVTWNAGAERIKGYRADEIIGRHFSRFYQPGAIAAGRPSYVLEQAAKHGHY 103

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +      +G+  +  + + A  ++  +    GF    I            L     + 
Sbjct: 104 EEEGWRVRKDGSAFWAFVTVTA--VHDESGSLRGF--IKITRDMTERKRLDELEVATQRL 159

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
              +  +     +      +        P   +   ++   +    +   L      LL 
Sbjct: 160 DVFIATLAHELRNQLAPLQNTVGVLQSLPSSALVPALAHCRDVAGRQITQLVRLVDDLLD 219

Query: 264 SEE---SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
                   +   E    +               +   +  +     +  ++         
Sbjct: 220 IGRIKSDKVTLDEASVNLRDVVTRSVDGMQAKLDARGQRVDVTLPGSAVTVRGDDARLVQ 279

Query: 321 LTPETVDKC 329
           +    +D  
Sbjct: 280 VLYNLLDNA 288


>gi|49474858|ref|YP_032899.1| sensor histidine kinase protein [Bartonella henselae str.
           Houston-1]
 gi|49237663|emb|CAF26846.1| Sensor histidine kinase protein [Bartonella henselae str.
           Houston-1]
          Length = 821

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 119/661 (18%), Positives = 252/661 (38%), Gaps = 45/661 (6%)

Query: 172 NREFSGFRGFGIVHVNRVDNDPRALGKRL-DKKFSHLHEIKKGHSSVEKEKYDIFSQQSP 230
               +G           +     A  ++   +  + L   +     +++  +   S+   
Sbjct: 185 TGVIAGTVAIARFQDISLQQSENARLQKNIARILTELRMQRNLLDVIQEPVWIKDSEGKI 244

Query: 231 PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG 290
               R   +++   E      D+            E+   E    HT+   +  +     
Sbjct: 245 CFINRAFREITGFREGSNEVVDLFNETTQRKTDETETVFQEH--VHTVLDGERHRFHLTR 302

Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFL 349
                   +F       + +L+           ET+D+      V+  +  L + N +F 
Sbjct: 303 ITTAEGMAAFARDDSA-YENLANELRRVFQNHCETLDQISTAVAVFDSNQKLKFCNHAFK 361

Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
           +L   ++   +E     +  L+  +        P      +    A            E+
Sbjct: 362 ILWPLEN-SFLESEPSHTLFLERLREKGLIGEHPDWRTWKEELLKAYRQT--------ES 412

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI----LEATSDGI 465
           +  +  +P  +  +   +    G      +    K  +E     L  I    L+  S+G+
Sbjct: 413 NQQIWNLPDGRTVRVISSPHPQGGVTWLYENLTEKIDLEQRYNTLIKIQGETLDKLSEGV 472

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMN---HYLTEILSLDL 521
            +   +G +  +N A+SKL+  P   ++     T      +P  +     + T+ ++   
Sbjct: 473 VVFGTDGCLRLSNPALSKLWSLPYNLLVEGTHITQLQSYCSPLTLRQEWDWFTKFITGFA 532

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE 581
            +          K   ++   ++      +    LT  ++++       L    +  E  
Sbjct: 533 EERDTYSGRMDLKNGMIIDYTLVPLPNGET---MLTFVNVTDTVHVARALQEKNEALESA 589

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
              +++F+  VS+E+RTPLT IIGFS+++++Q FGP+ N R  EY  +I      +L+IV
Sbjct: 590 DRLRNEFVQHVSYELRTPLTNIIGFSDILRDQIFGPI-NERQQEYLGHIHSESGSLLNIV 648

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701
           ND+LD++ +++G M L  +PV++ +A+ +A++ V+   N + I +    + ++  I  D 
Sbjct: 649 NDILDLATLDAGIMELDIKPVNIADAMVQAVARVEERLNGRHITLLQQISPSLNFISVDA 708

Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761
             + QI +N+LSNAI+F      I        +++++  V + G  +    L++  K F 
Sbjct: 709 TRLHQIFVNVLSNAINFATEASTIEF-CAEEKDDDIVFSVHNEGSDIPEDILDRIFKRF- 766

Query: 762 QIPNSQQIR--------GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
              +S            G        L K+ V+ + G+  IF+   +GT ++  FP+   
Sbjct: 767 ---SSHSHHGGRAGAGLGL------SLVKSFVELHGGRVEIFTGTGQGTTVKCFFPISKE 817

Query: 814 S 814
            
Sbjct: 818 D 818


>gi|296268178|ref|YP_003650810.1| GAF sensor hybrid histidine kinase [Thermobispora bispora DSM 43833]
 gi|296090965|gb|ADG86917.1| GAF sensor hybrid histidine kinase [Thermobispora bispora DSM 43833]
          Length = 1214

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 73/261 (27%), Positives = 134/261 (51%), Gaps = 16/261 (6%)

Query: 563  EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
            + +Q +  L    +     S +KS+FLA +SHE+RTPL +++  ++++ +   G L  PR
Sbjct: 748  QIEQARRALEERAEQLAISSRYKSEFLANMSHELRTPLNSLLVLAKLLADNAEGNLT-PR 806

Query: 623  YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             +E+A  I  +G  +L ++ND+LD+SK+E+G+M++H + +SL   V    +     A +K
Sbjct: 807  QVEFAKTIHEAGTALLQLINDILDLSKVEAGRMDIHPQQISLPRLVEYMEATFAPLAEDK 866

Query: 683  RILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE------ 735
             +        + P  I  D + ++Q+  N+LSNAI FT  G ++ +       +      
Sbjct: 867  ELAFTVRLDPSAPQEIYTDEQRLQQVLRNLLSNAIKFTHEG-EVRLEVGRAPADVQYADE 925

Query: 736  -------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                    +  RV DTG+G+   +L+   + F Q   +   +  GTGLGL + + +    
Sbjct: 926  ALKNTPDMLAFRVIDTGIGIAPNKLDVIFEAFRQADGTTSRKYGGTGLGLSICRQIARLL 985

Query: 789  MGKFYIFSTPAKGTLIEIIFP 809
             G+ ++ STP +G+   +  P
Sbjct: 986  GGEIHVASTPGEGSTFTLYLP 1006


>gi|299066502|emb|CBJ37692.1| sensor histidine kinase in two-component regulatory system with
           phoB [Ralstonia solanacearum CMR15]
          Length = 443

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 77/410 (18%), Positives = 159/410 (38%), Gaps = 37/410 (9%)

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDT-----RINKRKMEIEVMQLCSILEATSDGI 465
                +      + P  +   G     +       R    ++E +  +    ++A+ +G+
Sbjct: 52  RLWRVLESPAYGEIPSALGLWGEVYYRLHRLMKGWRTQVLQVEQQHSRFIQAIQASPNGV 111

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
            +++ E  I   N    + FG   +  LR+  T  + +        ++  +   +  + L
Sbjct: 112 LMLDGEDQIEWCNAVAEEHFGLSAKRDLRQRITHLIRRP------EFVRYLARGEFEEPL 165

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
               +G  K+  ++S +++           L   DI++ +  +              + +
Sbjct: 166 TMRDMGPHKQ-SIVSAQVLPY---GEDRKLLVSQDITKLENTE--------------AMR 207

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
            DF+A VSHE++TPLT + GF E +++    PL       Y   +      +  +V DLL
Sbjct: 208 RDFVANVSHELKTPLTVLSGFLETVRD---LPLSEDDKRRYLEMMHVQATRMQHLVEDLL 264

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLY-ANEKRILIRTSFANNIPRILADLRSV 704
            ++ +E         PV +   + +     +   A    I +    +     +      +
Sbjct: 265 ALATLEGNSEPPSITPVPMQRVMLQLQHDAEALSAGRHAISMTCDAS---VSVCGAELEL 321

Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764
                N++SNAI +TP GG+I +  +       +  V DTG+G+    + +  + F ++ 
Sbjct: 322 LSAFSNLVSNAIRYTPDGGRISLDWSARE-GHAVFSVTDTGIGIAPEHIPRLTERFYRVD 380

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
            S+     GTGLGL + K ++  +     + S   KG+     FP   T+
Sbjct: 381 RSRSRDTGGTGLGLAIVKHVLSRHGADLQVVSERGKGSTFRASFPPERTA 430


>gi|171909890|ref|ZP_02925360.1| two-component hybrid sensor and regulator [Verrucomicrobium
           spinosum DSM 4136]
          Length = 836

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 91/373 (24%), Positives = 156/373 (41%), Gaps = 34/373 (9%)

Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI-------------LSLDLRQ 523
            NRA   L G  V +         L       +                      L  R 
Sbjct: 183 INRADGTLMGTMVVEQPMYNVRHLLSSPKLLAVLSIAGGAGLLPGLFFSLYMGRRLGKRV 242

Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA--------K 575
                 L + ++  LL+ R+  K +   +      ++  E  Q + +            K
Sbjct: 243 RDITEGLLALRQG-LLTHRLPQKGIDEIAEALQVFNETVEHLQIEEERKQKVISDSLAAK 301

Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
           + AE   + K+DFLA +SHEIRTP+  IIG + ++ +       +   +E    I  SG 
Sbjct: 302 RQAESGMAAKADFLANMSHEIRTPMNGIIGTTSLLLDSPL----DNEQMELVRMIRTSGE 357

Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695
            +L ++ND+LD SK+ES +M L   PVSL+    E + +    A EK + +    + NIP
Sbjct: 358 SLLHLINDILDFSKLESARMVLERLPVSLERLFHETMGIFAFKAAEKGVELNYHVSENIP 417

Query: 696 R-ILADLRSVKQIALNILSNAIHFTPSGGQIIIS---TTHTSNEE----VILRVRDTGVG 747
           R I  D + +KQ+ +N+++NA+ FT  G  ++++        +      + + VRDTG+G
Sbjct: 418 RHITGDFQRLKQVLVNLVANAVKFTERGEILVVAQPIVRKLPDGSEYTLLQVSVRDTGIG 477

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           +   +L    + F Q   S   +  GTGLGL + + +     G+  + S    G+     
Sbjct: 478 IAKDKLPLLFQAFTQADTSTTRKYGGTGLGLAICRKLCRLMGGEISVTSELGGGSNFFFE 537

Query: 808 FPLYDTSHPHDCI 820
            P+       + +
Sbjct: 538 VPMSAAQDDAEAL 550


>gi|3282775|gb|AAC25064.1| histidine protein kinase PhoR [Vibrio cholerae]
          Length = 433

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 74/402 (18%), Positives = 153/402 (38%), Gaps = 30/402 (7%)

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDT-RINKRKMEIEVMQLCSILEATSDGIAI 467
           ++           +                   R  ++++   + +  +  E+    + +
Sbjct: 54  SAWLWDEKRLTPPSGTGNWESLFNGIYRLQQRHRKKRKELTNLIRRFRNGAESLPHAVVV 113

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
              EG I+  NR    L G+   D   +P +  L          ++  +   D    L  
Sbjct: 114 FRSEGNIVWCNRLAQHLLGFRWPDNAGQPISNLLRTP------DFIKYLKKDDFTDPL-- 165

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
                   +++L LRI+         + + + D+++ KQ +                + +
Sbjct: 166 EMRSPLNSDRMLELRIVPY---TEGEHLMVVRDVTQLKQLEG--------------MRRN 208

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           F A VSHE+RTP+T + G+ E+   +    L  P + +    +    N +  +VN LL +
Sbjct: 209 FFANVSHELRTPMTVLQGYLEM--TEDPDVLAGPMWSKAHGVMTEQLNRMNSLVNQLLTL 266

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707
           SKIE+  M    +   +   +          + E    +      ++ ++LAD   ++  
Sbjct: 267 SKIEASPMVELDQVFDVPAMLEVLEKEAVSLSGEALHKLHFEVDKSL-KVLADEDQLRSA 325

Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
             N++ NA+ +TP G QI +   + + +   L V D G G+    L +  + F ++  ++
Sbjct: 326 ISNLVYNAVKYTPPGAQIDVRW-YRTGKGACLEVEDKGEGIEPQHLHRLTERFYRVDKAR 384

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
                G+GLGL + K  +  +     I+S    G+    + P
Sbjct: 385 SRDTGGSGLGLAIVKHALAHHDTHLDIYSKVGVGSKFSFVLP 426


>gi|313113960|ref|ZP_07799516.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310623723|gb|EFQ07122.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 780

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 85/250 (34%), Positives = 141/250 (56%), Gaps = 7/250 (2%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E +Q ++  + A + AE+ S  K+DFLA +SH+IRTP+ AIIG + ++KN+   P    +
Sbjct: 361 ELRQAQDIAAEALQSAERASKAKTDFLANMSHDIRTPMNAIIGITTLMKNELHQP---EK 417

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             E+   ++ SG L+L I+ND+LD+S+IESGK  L+ E ++L + +S+  S+++  A ++
Sbjct: 418 LAEHLGKLENSGQLLLGIINDILDMSRIESGKTTLNVEKMNLPQQISQLDSIIRQQAGQR 477

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VI 738
           R     +       +LAD   + ++ +NILSNA+ +TP+GG I          E      
Sbjct: 478 RQTFTVNTHLQHENVLADPNRLNRVLMNILSNAVKYTPTGGHIRFEVDELPRNEHYARYR 537

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
             V+D G+GM+    +    PF +   S   + +GTGLG+ + K +VD   G   + ST 
Sbjct: 538 FVVQDDGIGMSKAYQKTLFDPFTREERSGTNKVQGTGLGMAITKNIVDLMGGSINVESTT 597

Query: 799 AKGTLIEIIF 808
            KGT  E++ 
Sbjct: 598 GKGTRFEVVL 607


>gi|153874109|ref|ZP_02002450.1| sensory transduction histidine kinase [Beggiatoa sp. PS]
 gi|152069427|gb|EDN67550.1| sensory transduction histidine kinase [Beggiatoa sp. PS]
          Length = 403

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 83/243 (34%), Positives = 137/243 (56%), Gaps = 3/243 (1%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
            L  AK+ AE+ +S KS F+A +SHE+RTP+ AIIG+SE +  +    L     ++  + 
Sbjct: 156 ALQKAKQAAEEANSVKSQFMANISHELRTPMNAIIGYSE-LLKEEAEDLQITGLVDDIDN 214

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I+++G  +LDI+ND+LD SKIE+GKM L  E   +   +++   +VQ     +   +   
Sbjct: 215 IEKAGRHLLDIINDVLDFSKIETGKMTLSLENFEILILINDIKMIVQPLVKNQLNHLEID 274

Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSN-EEVILRVRDTGVG 747
            A+NI  + ADL  V++I LN+LSNA  FT +G  ++I+S     N + +  +V DTG+G
Sbjct: 275 CADNIGAMYADLSKVRRILLNLLSNASKFTENGTIKLIVSKESEENTQWIKFKVNDTGIG 334

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           +T+ + ++    F Q   S   +  G G+GL + K  VD   G  ++ S   +G+   + 
Sbjct: 335 ITDEQQQQIFHTFTQADGSSTRKYGGIGMGLTVTKRFVDIMQGTIHVESQLGQGSTFTVR 394

Query: 808 FPL 810
            P+
Sbjct: 395 LPI 397


>gi|255016168|ref|ZP_05288294.1| putative signal transduction histidine kinase [Bacteroides sp.
           2_1_7]
          Length = 798

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 73/261 (27%), Positives = 121/261 (46%), Gaps = 9/261 (3%)

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
           ++  +  I    +    +    K AE  +  KS+FL+R+SHEIRTP+  I+G S +    
Sbjct: 382 FTALLLAIGARMKA-TVIQGNLKRAEAANLAKSEFLSRMSHEIRTPMNGIVGMSTIAMQN 440

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
                   +  +    +  S   +L ++ND+LD+SKIESGK+ L  E  +    + +  +
Sbjct: 441 ID---NTDKIKDCLEKVIMSSKHLLALINDVLDMSKIESGKVELRHESFNFRAFLQDLEN 497

Query: 674 LVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
           L    A  K I   T  A+++  +I+ D   + Q+  N+LSNA+ FTP+ G I +  + T
Sbjct: 498 LYGEQAKSKGISYETILASDLEVQIIGDSLRLNQVLSNLLSNALKFTPAKGMIKLRVSKT 557

Query: 733 SNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
             +     +   V DTG G+     +K  + F Q       +  GTGLGL + K      
Sbjct: 558 GEDQENVYLRFEVIDTGCGIAEENYDKIFESFEQENVDVTYKYGGTGLGLSIVKRFTGLM 617

Query: 789 MGKFYIFSTPAKGTLIEIIFP 809
            G  ++ S    G+   +  P
Sbjct: 618 GGGIHVTSVQGSGSTFTVDLP 638


>gi|150009789|ref|YP_001304532.1| two-component hybrid sensor kinase/response regulator
           [Parabacteroides distasonis ATCC 8503]
 gi|149938213|gb|ABR44910.1| two-component system sensor histidine kinase, with response
           regulator receiver domain [Parabacteroides distasonis
           ATCC 8503]
          Length = 1045

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 95/516 (18%), Positives = 189/516 (36%), Gaps = 49/516 (9%)

Query: 317 EGENLTPETVDKCPIPFFVYSHGN--------LFYANPSFLLLTKYKSVDDIEIAGGLST 368
              +   +  +  P+P+               +   N +F      K     +    ++ 
Sbjct: 409 RLLSRYRDLFNNMPLPYIRQRLIREGTQIDVQVLDVNHAFEEKIAPKDFVVNKRGKEIAN 468

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
           L+          +  V                            +  +P  + N      
Sbjct: 469 LIGGSY---PLLLSAVPTVLESGKSFTYEYYFEPT----GLYYTIIIMPTSEENV----- 516

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNR-------- 479
             +    +  D    +  ++    +L   LEA        N  EG I+  ++        
Sbjct: 517 -VDAFFIDITDIHKFQTHLKAMNHKLAMALEAADLLPWRYNLAEGKIIYESKVHPGDNIE 575

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST--KEEK 537
                      ++  K +   +  +  + +     ++ +  +++  ++  L      E++
Sbjct: 576 TAE----VHTHEVSLKEYFSKIHPSFRACVEKAFDDLCNGKIKKVRKEYCLERLIPGEDR 631

Query: 538 LLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
                I +     +S        +   I+E KQ ++ L  A+  AE+ +  KS FLA +S
Sbjct: 632 HEWEEIQVMVEYDASGKPKALIGSTISITERKQLEHDLRMARDKAEESNKLKSAFLANMS 691

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HEIRTPL AI+GFS ++ +            E+A+ I+ + +L+L ++ND+LD+SKIE+G
Sbjct: 692 HEIRTPLNAIVGFSNILASTD----DLEDKKEFADIIENNNSLLLQLINDILDLSKIEAG 747

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713
            +   ++ V ++  + +      L      + I          I  D   + Q+ +N+L+
Sbjct: 748 TLEFTYDYVDINAVLRDLEQSAHLKNKNPDVQISFKDYLEPCVIYTDRNRLSQLMINLLN 807

Query: 714 NAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
           NA+ FT +G  I        +  +   V DTG G+   + +     F ++        +G
Sbjct: 808 NAMKFTQAG-LISFGYKLRDDNTLWFYVEDTGCGIPENKRKDIFGRFVKLNTF----AQG 862

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           TGLGL + + +V    G   + S   KG+      P
Sbjct: 863 TGLGLSICEMIVTQMKGTIGVDSVEGKGSRFWFTLP 898


>gi|14906039|gb|AAK72489.1| GacS [Pseudomonas chlororaphis subsp. aureofaciens]
          Length = 917

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 78/243 (32%), Positives = 143/243 (58%), Gaps = 8/243 (3%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  A+K A + S  KS+FLA +SHEIRTPL  I+GF+ +++     P    R ++Y   
Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSELTP----RQLDYLGT 325

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I++S + +L I+N++LD SKIE+GK+ L   P +L + + + ++++   A+ K++ + + 
Sbjct: 326 IEKSADSLLGIINEILDFSKIEAGKLVLDSIPFNLRDLLQDTLTILAPAAHAKQLELVSL 385

Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQI---IISTTHTSNEEVILRVRDTG 745
              + P  ++ D   +KQI  N++SNAI FT  G  +   ++   H  + ++ + ++DTG
Sbjct: 386 VYRDTPLSLVGDPLRLKQILTNLVSNAIKFTREGTIVARAMLEEEHEDSVQLRISIQDTG 445

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G++N ++    + F Q  NS   +  GTGLGL ++K +++   G+  + STP +G+   
Sbjct: 446 IGLSNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFW 505

Query: 806 IIF 808
           I  
Sbjct: 506 ISL 508


>gi|83776228|dbj|BAE66347.1| unnamed protein product [Aspergillus oryzae]
          Length = 1134

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 77/254 (30%), Positives = 133/254 (52%), Gaps = 11/254 (4%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           IS  +    + + A++ AE  +  KS+FLA +SHEIRTP+  IIG +++  +    P   
Sbjct: 599 ISNLRDSIQRNTAAREAAELANQSKSEFLANMSHEIRTPMNGIIGMTQLALDTDDLPPPT 658

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
               E  N +   GN +L I++D+LDISKIE+  M +   P SL + V +A+ ++ + A+
Sbjct: 659 ---REMLNVVHNLGNSLLVIIDDILDISKIEANHMKIESVPFSLGQTVFKALKILAVEAS 715

Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIST-----THTSN 734
           E+ + +     N++   ++ D   ++QI LN++ NAI FT +G QI ++          +
Sbjct: 716 ERSLHLTYHINNSVRDCVIGDAFRLRQIILNLIGNAIKFTETG-QIQLTIKEAVPRCHPD 774

Query: 735 EEV-ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
           + +    V DTG+G+   +L+     F Q   S   +  GTGLGL ++K +V+   G  +
Sbjct: 775 KYLLEFSVSDTGIGIDKSKLDLIFDKFQQADGSMTRKFGGTGLGLSISKKLVNLMGGDIW 834

Query: 794 IFSTPAKGTLIEII 807
           + S    G+     
Sbjct: 835 VTSAVGVGSTFHFT 848


>gi|220909974|ref|YP_002485285.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219866585|gb|ACL46924.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 701

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 66/252 (26%), Positives = 126/252 (50%), Gaps = 6/252 (2%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E  +  + L H     ++ +  K +FLA +SHE+RTPL  I+ +S+++++++F      +
Sbjct: 310 ERAELVSSLQHQTGELKRANRVKDEFLAVLSHELRTPLNPILAWSQMLQHRKF---SQDK 366

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                  I+R+  L   +++DLLD+++I   K+ L+  P+ L   +  AI  VQ  A  K
Sbjct: 367 LAIGLETIERNAKLQAQLIDDLLDMARILRDKLVLNPVPLDLGRVIDAAIETVQPSAAAK 426

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
            ++I   F+  + ++  D   ++Q+  N+L+NA+ F P GG++ I       + + ++V+
Sbjct: 427 SVVIEKHFSA-VGQVSGDAARLQQVIWNLLANAVKFVPEGGRVQIGLAQI-GDRIQIQVK 484

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKG 801
           D G G+    L    + F Q   S      G GLGL + + +V+ + G     S    +G
Sbjct: 485 DNGKGIKPDFLPYVFESFRQADASTTRTFGGLGLGLAIVRQIVEMHGGTITADSEGDGQG 544

Query: 802 TLIEIIFPLYDT 813
               ++ P+   
Sbjct: 545 ATFTVLLPMLHA 556


>gi|83943090|ref|ZP_00955550.1| response regulator receiver protein [Sulfitobacter sp. EE-36]
 gi|83846098|gb|EAP83975.1| response regulator receiver protein [Sulfitobacter sp. EE-36]
          Length = 685

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 90/474 (18%), Positives = 165/474 (34%), Gaps = 45/474 (9%)

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM-TFIPFEKANQFPE 426
             L A  L +      +   +        +    T +     +     + P  +      
Sbjct: 214 HPLKASGLVEALPDHRLSALKDKPVVTTFNVLGTTWEAAVRPAAGWPAYSPQSRNLVGFA 273

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
            +    +    +  R            L   ++A  +G    + +  ++  N+       
Sbjct: 274 LISAIFLLGVLLAFRRMALNQTNAHALLAEAIDAIDEGFIAFDDKERVMVVNQKYRDY-- 331

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL------- 539
           +P    L  P     E                       E++       +  L       
Sbjct: 332 HPQIADLIVPGATMGELVVNWANRTESLSGSKSKQAWVRERLQRFRNPGQAFLQDIGNDN 391

Query: 540 SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
            L++   K P          D++  K+ +         AE     K++FL  VSHE+RTP
Sbjct: 392 WLKVTEAKTPH-GYTVGIWTDVTAEKRAQE-------AAEAADREKTEFLNNVSHELRTP 443

Query: 600 LTAIIGFSEVIKNQRFGPLGNP--------------------RYIEYANY----IDRSGN 635
           LT I G +  +++    P                         Y ++       I  S  
Sbjct: 444 LTVIFGRASFMRHSDKMPQAQRLMSALTADGSGCPKSAAAAIEYQKFITDQGAGIAESSQ 503

Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695
            ++ +V DLLD +K+  G++ L   P  LDE        +Q  A  K + +  +      
Sbjct: 504 HMIRLVEDLLDWTKVSRGQLELDMAPTQLDEIARTVTQELQPAAEAKGLTLTYAGDGPAA 563

Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755
            + AD   VKQI  N+++NAI FT  G +I +S  H+++ E++  V DTG G+   +  +
Sbjct: 564 TV-ADKVRVKQILYNLITNAIKFTSEG-KIHLSMLHSAD-EIVFSVTDTGNGIAEEDASR 620

Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             + F Q+  S   +  G GLGL +++ + + + G   + S    G+   +  P
Sbjct: 621 VFQRFQQVDGSMTRQNGGLGLGLAISEQLAELHGGSLSLESKLGVGSTFSLTLP 674


>gi|332527238|ref|ZP_08403306.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax benzoatilyticus
           JA2]
 gi|332111658|gb|EGJ11639.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax benzoatilyticus
           JA2]
          Length = 766

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 88/455 (19%), Positives = 172/455 (37%), Gaps = 41/455 (9%)

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
           + L R+       S     I+           +  +       +M    IE    +   +
Sbjct: 163 ITLVRAALEAGDVSTAFEAIKGFGGVYALAQILSVQLVTLTLVSMNSQRIEW---ELGAS 219

Query: 444 KRKMEIEVMQLCSILEATSDGIA----IINREGIILSTNRAVSKLFGYPVEDILR--KPF 497
             +++    QL ++ +    G      ++         +  +    G    D++   +P 
Sbjct: 220 AARLQAGEQQLRAMGDNLPAGFVYRYEVVGGRRRFDHVSGGIEGTLGLRPADVMADAEPL 279

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---Y 554
              L     S          +                + +   L +  + L  +     +
Sbjct: 280 FAMLAPEARSHYIEDEQRSAAEG--SDYHATLRFELPDGRQRWLDVRSRPLRRADGSIFW 337

Query: 555 SLTMHDISEWKQEKNKLSHAK------------------KIAEKESSHKSDFLARVSHEI 596
                D +E  Q +  L+  +                  + AE  +  KS FLA +SHEI
Sbjct: 338 DGVALDATERLQAQQALAEHRLQLEQTVERRTRQLAEASQRAEAANLAKSAFLANMSHEI 397

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTPL A+IG + +I+ +        R  +    ++ +   +L+++N +LD+SKIE+GKM 
Sbjct: 398 RTPLNAMIGMAHLIRRETLSV----RQSDRLGKLESAARHLLEVLNAVLDLSKIEAGKMA 453

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716
           L   P+ ++  V+  +S+V   A  K++ + +   +    ++ D   ++Q  LN  +NA+
Sbjct: 454 LEAVPLRVETVVANVLSMVDERAGAKQLRLSSEIEHMPRDLIGDPTRLQQALLNYANNAV 513

Query: 717 HFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
            FT  G  + +       +E    V   V+D+G+G+    L +  + F Q   S   R  
Sbjct: 514 KFTEQGA-VTLRARLVEQDEGSALVRFEVQDSGIGIAPDVLPRLFEAFEQADRSTTRRAG 572

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           GTGLGL + + + +   G+    S   +G+     
Sbjct: 573 GTGLGLAITRRLAELMGGEAGASSVAGEGSTFWFS 607



 Score = 48.5 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 42/531 (7%), Positives = 128/531 (24%), Gaps = 78/531 (14%)

Query: 79  IPRTVRFTWN---IDAHGYLKEISEELPKTIGNYAFKMIGMR---LCDVSDILHIDP-NN 131
                 F +    +        +S  +  T+G     ++         ++         +
Sbjct: 235 DNLPAGFVYRYEVVGGRRRFDHVSGGIEGTLGLRPADVMADAEPLFAMLAPEARSHYIED 294

Query: 132 HIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN 191
                 +  +         P         +D+ + P+   +         G+        
Sbjct: 295 EQRSAAEGSDYHATLRFELP---DGRQRWLDVRSRPLRRADGSI---FWDGVALDATERL 348

Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT------E 245
             +        +     E +    +   ++ +  +         M +++ +         
Sbjct: 349 QAQQALAEHRLQLEQTVERRTRQLAEASQRAEAANLAKSAFLANMSHEIRTPLNAMIGMA 408

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTIN---------LNQYTKKQYFGTLQNNS 296
           +   ++ +   +   L   E ++    E  + +          +          T+  N 
Sbjct: 409 HLIRRETLSVRQSDRLGKLESAARHLLEVLNAVLDLSKIEAGKMALEAVPLRVETVVANV 468

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSF----LLLT 352
               +  +      LS+  +           +       Y++  + +           L 
Sbjct: 469 LSMVDERAGAKQLRLSSEIEHMPRDLIGDPTRLQQALLNYANNAVKFTEQGAVTLRARLV 528

Query: 353 KYKSVDDIEI-----------AGGLSTLLDAPKLSDNNAIKP-------VMLYRSDRTCI 394
           +      +                L  L +A + +D +  +        + + R     +
Sbjct: 529 EQDEGSALVRFEVQDSGIGIAPDVLPRLFEAFEQADRSTTRRAGGTGLGLAITRRLAELM 588

Query: 395 AASARLHTIQWNRENSL-AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE--- 450
              A   ++         +        A + P   P    E          R +  E   
Sbjct: 589 GGEAGASSVAGEGSTFWFSARLRRDPSAAEEPPQGPAAEAEQALRQRHAGARVLLAEDNP 648

Query: 451 ---------VMQLCSILEATSDGIAIIN----REGIILSTNRAVSKLFGYPVEDILRKPF 497
                    + +   ++E   DG+A ++    R+  ++  +  +  L G      +R+  
Sbjct: 649 VNAEVAQAILEEAGLVVEVAEDGVAAVDMALARDYRLVLMDMQMPGLDGLDACRAIRRRH 708

Query: 498 -----------TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
                           ++        + + LS  +        L    + +
Sbjct: 709 PAGTLPVIAMTANAFAEDKVRCQAAGMDDFLSKPVDPLALYQLLLRWLDGR 759


>gi|326390091|ref|ZP_08211653.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325993956|gb|EGD52386.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 461

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 66/246 (26%), Positives = 123/246 (50%), Gaps = 7/246 (2%)

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
             +  +   +   +    K++F++ +SHE++TPLT+I GF+    +       N    EY
Sbjct: 222 LADSFNKMAEELGQLEEMKNEFISNISHELKTPLTSIKGFAITAMD---LVEKNSELYEY 278

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
            N ID   + +  +V++LLD SKIE  K+ L FE V LD+ + + +++++ +A+   + +
Sbjct: 279 LNIIDEETDRLSRLVDELLDFSKIELNKIKLSFEEVELDKLIEDTVAILRPHASNYGVNL 338

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
                 +   I  D+  +KQ+ +NI+ N I     G  + +       + V +R+ D G 
Sbjct: 339 ICKKKIDRVVINGDVNRLKQVLVNIIDNGIKACSRGKYVKVFLDIKDKKAV-IRIEDQGQ 397

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+   E++     F +  N    +  GTGLGL ++K +++ + G   + S   KG++  I
Sbjct: 398 GIPQEEIKYIFDKFYRGKN---NKYSGTGLGLAISKKIIEEHKGTITVESEVGKGSVFTI 454

Query: 807 IFPLYD 812
             PL D
Sbjct: 455 ELPLKD 460


>gi|283479542|emb|CAY75458.1| sensor histidine kinase/response regulator [Erwinia pyrifoliae DSM
           12163]
          Length = 924

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 87/334 (26%), Positives = 151/334 (45%), Gaps = 19/334 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           LF Y +   +  P    +               L   +   +             +++ +
Sbjct: 208 LFAYRLMRDVTGPIRNMVSTVDR-----IRRGQLDSRVEGHMLGELDVLKNGINSMAMSL 262

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                           D+ E  ++      +L  AK+ A++ +  KS+FLA +SHE+RTP
Sbjct: 263 TAYHEEMQQNIDQATSDLRETLEQMEIQNVELDLAKRRAQEAARIKSEFLANMSHELRTP 322

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+     Q    + N    +Y + I+RS N +L I+ND+LD SK+E+GK+ L  
Sbjct: 323 LNGVIGFT----RQTLKTMLNSTQRDYLHTIERSANNLLSIINDVLDFSKLEAGKLVLET 378

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P  L   + E + L+   A+EK + +  +  +++P   + D   ++QI +N+L NAI F
Sbjct: 379 IPFPLRATLDEVVVLLAQSAHEKGLELTLNIQSDVPDNAIGDPLRMQQIIVNLLGNAIKF 438

Query: 719 TPSGGQIIISTTHTS----NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           T SG  I I     +      E+ +++ DTG+G++  +  K  + F Q   S   R  GT
Sbjct: 439 TESG-NIDIRVEKRALSNNRMELEVQIHDTGIGISEKQQSKLFQAFRQADASISRRHGGT 497

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           GLGL + + +V+   G+    S   +G+      
Sbjct: 498 GLGLVITQKLVNEMGGEISFHSRLHRGSTFWFHI 531


>gi|149188199|ref|ZP_01866493.1| sensory box histidine kinase/response regulator [Vibrio shilonii
           AK1]
 gi|148837788|gb|EDL54731.1| sensory box histidine kinase/response regulator [Vibrio shilonii
           AK1]
          Length = 1205

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 79/250 (31%), Positives = 130/250 (52%), Gaps = 8/250 (3%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
             ++  +KL+ A+  A+  +  KSDFLA +SHEIRTP+ AIIG S +             
Sbjct: 459 ALEKSADKLAIARDEADYANQAKSDFLANMSHEIRTPMNAIIGMSYLALKTDLTKA---- 514

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
              Y   +  S + +L ++ND+LD SKIE+GK+++      L+  +    +LV L A+E+
Sbjct: 515 QRNYIQKVKLSADTLLGLINDILDFSKIEAGKLDIEHVDFRLENVLDNISNLVGLKASEQ 574

Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILR 740
            + +    + ++P  +  D   + QI  N+ +NA+ FT  G  +I I+  +  N++V LR
Sbjct: 575 GLELLIHTSKDVPTALYGDPLRLGQILTNLANNAVKFTEQGEVKITITADNLENDDVTLR 634

Query: 741 --VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
             V DTG+GMT  + +K    F Q  +S   +  GTGLGL ++K +     G   + S  
Sbjct: 635 FAVSDTGIGMTPEQTQKLFNKFTQADSSTTRKYGGTGLGLAISKELCLLMGGDIEVRSQF 694

Query: 799 AKGTLIEIIF 808
            +G+  E   
Sbjct: 695 GEGSTFEFTI 704


>gi|319646172|ref|ZP_08000402.1| sensor protein [Bacillus sp. BT1B_CT2]
 gi|317391922|gb|EFV72719.1| sensor protein [Bacillus sp. BT1B_CT2]
          Length = 445

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 81/387 (20%), Positives = 173/387 (44%), Gaps = 30/387 (7%)

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
           ++    +++  E  +   I++   + +   +R G I   N+A + L GY VE+ L   + 
Sbjct: 68  ESEKKYKELSSETNR---IMDNLQEIVFQTDRIGYITFLNQAWTTLTGYSVEESLGTMYN 124

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYS 555
            + +     + NH + ++ + +    +    L   K+       +  K    +       
Sbjct: 125 DYFDHE-ERISNHLIAQLKNKEPEGRI--EVLYHRKDGSKFWGEVHYKLYYKNGQFTGSL 181

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESS---HKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
            T+ D++E K+ + +L  + +    +S          A ++HE+R PLT++ GF +++K 
Sbjct: 182 GTLTDVTERKKAEMELFKSNQRLAMQSQKLAMAGQLAAGIAHEVRNPLTSVNGFLQLMKA 241

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
           +       P   +Y + I      +  ++ +LL ++K       + F+ + ++  + +  
Sbjct: 242 EY------PDRKDYFDIIFSEIKRIDSVLGELLVLAKP----HQVQFKKIKINSVLQQVA 291

Query: 673 SLVQLYANEKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
           +L++  A    I I  +F +     I  D   +KQ+ +N++ N I   P GG+I IS + 
Sbjct: 292 TLLETNAVLSHIKIEKAFQHGEEWEINGDENQIKQVFINLIKNGIEAMPDGGKITIS-SK 350

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
              + V + ++D G G++  +L K  +PF         + EGTGLGL +   ++ A+ G+
Sbjct: 351 AEGDYVKISIKDEGGGISQADLAKLGEPFF------STKEEGTGLGLTICLNIIGAHNGE 404

Query: 792 FYIFSTPAKGTLIEIIFPLYDTSHPHD 818
             I S   +G+   I+ P+   +   +
Sbjct: 405 MKIDSKLGEGSTFHILLPVDKGAASEE 431



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/122 (14%), Positives = 39/122 (31%), Gaps = 6/122 (4%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            +  D  GY+  +++      G    + +G    D  D      N+ I  L  ++     
Sbjct: 91  VFQTDRIGYITFLNQAWTTLTGYSVEESLGTMYNDYFDHEERISNHLIAQLKNKEPEGRI 150

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR-ALGKRLDKKF 204
           +      +G+  +  +      +Y +N +F+G    G +            L K   +  
Sbjct: 151 EVLYHRKDGSKFWGEVHYK---LYYKNGQFTG--SLGTLTDVTERKKAEMELFKSNQRLA 205

Query: 205 SH 206
             
Sbjct: 206 MQ 207



 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/156 (10%), Positives = 40/156 (25%), Gaps = 28/156 (17%)

Query: 310 SLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIE------- 361
                + E  + T   +D      F     G + + N ++  LT Y   + +        
Sbjct: 68  ESEKKYKELSSETNRIMDNLQEIVFQTDRIGYITFLNQAWTTLTGYSVEESLGTMYNDYF 127

Query: 362 --IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
                  + L+   K  +      V+ +R D +             N             
Sbjct: 128 DHEERISNHLIAQLKNKEPEGRIEVLYHRKDGSKFWGEVHYKLYYKNG------------ 175

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
                 +     G   +  + +  + ++     +L 
Sbjct: 176 ------QFTGSLGTLTDVTERKKAEMELFKSNQRLA 205


>gi|237710942|ref|ZP_04541423.1| two-component system sensor histidine kinase [Bacteroides sp.
           9_1_42FAA]
 gi|229454786|gb|EEO60507.1| two-component system sensor histidine kinase [Bacteroides sp.
           9_1_42FAA]
          Length = 1029

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 91/418 (21%), Positives = 168/418 (40%), Gaps = 38/418 (9%)

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE---------ATSD 463
           +        N   E    +    +  +    ++ +     +L   LE            D
Sbjct: 484 VNTFYDVVLNCSTEPDMVDVFCMDSTELHNAQQMLSATNHKLSMALEVANIVPWKWNLKD 543

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVED---ILRKPFTVFLEQNTPSVMNHYLTEILSLD 520
              + +    I     A++ + G   ED   +  K +   + +     +     ++    
Sbjct: 544 HTILCDLNRPI-----AMAAMPGSISEDQLSVSDKQYFAKIIKEDRPRVIQAYRDLADGK 598

Query: 521 LRQTLEKITLGSTKEEKLLSLRI----IIKKLPFSSC----YSLTMHDISEWKQEKNKLS 572
           + +  E        + K   +         +    +        +   I+E K  +N+L 
Sbjct: 599 IEKVKE-EYRVLANDGKHWKIDWVEAQAAVETRDKNGKPLTLVGSSLIINERKTMENELL 657

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
            AK  AE+ +  KS FLA +SHEIRTPL AIIGFS ++              EY N I+ 
Sbjct: 658 SAKDRAEESNRLKSAFLANMSHEIRTPLNAIIGFSNILA----TAEEEQEKQEYINIIES 713

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
           +  L+L +++D+LD+SKIE+G ++  +  V L++ +SE  S+V+       + +      
Sbjct: 714 NNTLLLQLISDILDLSKIEAGTLDFSYSNVELNDILSEIESVVRYRTETSGVQLIAHKGL 773

Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-SNEEVILRVRDTGVGMTNY 751
               I  +   + Q+  N+L+NA  FT  G    I+  +     E+   V+DTG G+   
Sbjct: 774 PSCPIKTEKNRLMQVLNNLLNNASKFTSQGS---ITFGYELCGRELYFYVKDTGCGIPAD 830

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           ++      F ++ +      +GTGLGL + + +V+   G+  + S   KG+      P
Sbjct: 831 KVNSIFGRFVKLNSF----VQGTGLGLSICQTIVEHMGGRIGVESEEGKGSTFWFTIP 884


>gi|144901085|emb|CAM77949.1| two-component sensor histidine kinase [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 699

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 92/475 (19%), Positives = 176/475 (37%), Gaps = 15/475 (3%)

Query: 338 HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY-RSDRTCIAA 396
            G +    P     TK   + +       + L+     S    +    L     +  +A 
Sbjct: 230 DGAILVQTPEGA-TTKMSGMTEFRPDSRDNGLIHDDDTSAGRIVAFRTLRPYGLKLSVAV 288

Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
           +A      W       +                       D   R N R ++ +      
Sbjct: 289 NAADLLNLWRSNALRLLLAALVAALVVAALIWAILRRLALDEAQRANLRSIDNQRRMAQF 348

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
            L+A +D +   N +G I+  N A  +  GY    +  +          P+     L ++
Sbjct: 349 SLDAGADMVVWTNDKGSIIYANPAAHQALGYAPGTLFNRSIPDIDPSVPPAAWEGRLDDL 408

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKNKLSHA 574
                  TL   T   T   KL+S+ + I  L           + DI   KQ +  L+  
Sbjct: 409 RRAG---TLRFETSLRTLSGKLISVEVSIALLQADGRDHTCAVIRDIGAHKQSEAILAER 465

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
            K  E  ++    F    SH++R PL  +  F   +  +RFG   +P   EY  +     
Sbjct: 466 TKRLEASNAELEQFAYVASHDLREPLRMVNSFVA-LLARRFGDQMDPEAREYVEFAREGA 524

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
             +  ++ DLL+ S++ S    +    V L   +++    + L  NE    +      ++
Sbjct: 525 LRMDRLILDLLEYSRVGSTGRPM--AAVDLGTVLNDVRQTLALTLNEAGAELI--LPASL 580

Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT-HTSNEEVILRVRDTGVGMTNYEL 753
           P++  D   + ++  N++ N + +  S     I     T + ++ L VRD G+G+     
Sbjct: 581 PKVWGDFDELARLLGNLIGNGLKYRHSDRLPRIEVECLTQDGQITLSVRDNGIGIAPQYF 640

Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           ++  + F ++    + R +GTG+GL + K +V+ + G+ ++ STP +G+      
Sbjct: 641 DRIFRIFQRLHG--RDRYDGTGIGLAICKKIVERHGGRIWVSSTPDQGSTFFFTL 693



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 29/256 (11%), Positives = 69/256 (26%), Gaps = 11/256 (4%)

Query: 76  FDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD 135
           F          W  D  G +   +    + +G     +    + D+   +         D
Sbjct: 348 FSLDAGADMVVWTND-KGSIIYANPAAHQALGYAPGTLFNRSIPDIDPSVPPAAWEGRLD 406

Query: 136 LLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA 195
            L+R  T   +T+L  + G  + V + +A L    R+          ++          A
Sbjct: 407 DLRRAGTLRFETSLRTLSGKLISVEVSIALLQADGRDHT------CAVIRDIGAHKQSEA 460

Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255
           +     K+    +   +  + V         +        +  +     +      + ++
Sbjct: 461 ILAERTKRLEASNAELEQFAYVASHDLREPLRMVNSFVALLARRFGD--QMDPEAREYVE 518

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL--SHRNHPSLSA 313
             +   L  +   L   E     +  +       GT+ N+ +++             L A
Sbjct: 519 FAREGALRMDRLILDLLEYSRVGSTGRPMAAVDLGTVLNDVRQTLALTLNEAGAELILPA 578

Query: 314 YFDEGENLTPETVDKC 329
              +      E     
Sbjct: 579 SLPKVWGDFDELARLL 594


>gi|258405345|ref|YP_003198087.1| multi-sensor signal transduction histidine kinase [Desulfohalobium
           retbaense DSM 5692]
 gi|257797572|gb|ACV68509.1| multi-sensor signal transduction histidine kinase [Desulfohalobium
           retbaense DSM 5692]
          Length = 862

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 93/587 (15%), Positives = 204/587 (34%), Gaps = 39/587 (6%)

Query: 235 RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTI-NLNQYTKKQYFGTLQ 293
            +     +++E+  H    LK     L  +        E    +       + Q  G L 
Sbjct: 288 ELTEAAVTMSEHLRHTKQELKNHAQNLEKTVARRTKALEHSQQLLEQKVMARNQELGALN 347

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI---PFFVYSHGNLFYANPSFLL 350
             S+ +                D  + +  +T+D  P      ++               
Sbjct: 348 RISELTT---------RAEGVHDVWQRVLAQTLDLIPAHGAGVYLLDQNQDVLVLRYAYN 398

Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH--TIQWNRE 408
                  +               +    +  + +         +A         I     
Sbjct: 399 -AGALPEEVANSCSVSEHSSRDNEQFKASITRALRAELCSTVTLAPEVSCSNIPISCRGR 457

Query: 409 NSLAMTFI---PFEKANQFPENMPQNGIEPEDV-DTRINKRKMEIEVMQLCSILEATSDG 464
               M+FI   P +   +  E +   G +     ++  +   +      L ++ +  +D 
Sbjct: 458 VLGVMSFIHKDPVDINEEQKELLLSIGRQIGIAVESLRDMHLLLHNKELLQTVFDGITDQ 517

Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
           + +++R+  +   N+A  + +   + D+L +P             +  L ++L      +
Sbjct: 518 LVLLDRDLRVQMVNQAYLRRYNVTLSDVLHRPCYEIHAGLDDICPDCSLPQVLEDKKPSS 577

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
             +    S+ E  LL    I+ +           H+I+E K+   K+   +K+       
Sbjct: 578 --REVETSSGEIFLLHFYPIVNEDGEVENIIRYTHEITEQKKMDQKIQQTEKMV-----A 630

Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
                + ++HEI  PL  I+ +++++K Q      +P+ +   + I++       IV DL
Sbjct: 631 LGQVSSGIAHEINNPLGIILCYTDLLKRQL---KESPQAVTDVDVIEQQARNCKKIVTDL 687

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704
           L  SK    K      P  ++  +     +++   ++  I         +P ++     +
Sbjct: 688 LQFSK----KQESPKSPEQINAIIQNVAQILRHQLHKNGIDFHLQLDPTLPLVVVSADKI 743

Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEE-VILRVRDTGVGMTNYELEKAMKPFGQI 763
           +Q+ +N++ NA+      G+I++ +        V L V D G G+ +   +K   PF   
Sbjct: 744 QQVVVNLVLNAMQAVGEQGRIVVESFVQEEGRRVALAVWDNGPGVESSIRQKIFDPFY-- 801

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             S +  GEGTGLGL ++  ++  + G+  + S   + T   +  PL
Sbjct: 802 --STKRVGEGTGLGLSVSYGIIQDHGGEITLESEQGQWTRFIVSLPL 846


>gi|37527766|ref|NP_931111.1| phosphate regulon sensor protein [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36787202|emb|CAE16282.1| phosphate regulon sensor protein [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 446

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 82/417 (19%), Positives = 157/417 (37%), Gaps = 62/417 (14%)

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
            N L +       + +        GI       R  +R++ + + +  S  E+  D I +
Sbjct: 54  SNWLWLDRSMLPPSGRGGWEPIFYGIHQMQQRNRKRRRELALLIKRFRSGAESLPDAIVM 113

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
           +  EG I   NR    L G+   +   +     L     S        ILS D  + L  
Sbjct: 114 MTTEGNIFWCNRLAQHLLGFRWPEDNGQHIFNLLRYPDFS------RYILSRDFSRPLSI 167

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
                     ++  R++         + +   D+++ +  +              + + D
Sbjct: 168 EL----NNGFVVEFRVMPY---SEGQFLMVARDVTQKRTLE--------------NARRD 206

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           F A VSHE+RTPLT + G+ EV+++Q      +    +  N +      +  +V  LL +
Sbjct: 207 FFANVSHEMRTPLTVLQGYLEVMQDQ--AAEDSSLNKKALNTMQEQTRRLDGLVKQLLQL 264

Query: 648 SKIESGKMNLHFEPVSLDEAVS--EAISLVQLYANEKRIL---IRTSFANNIPRILADLR 702
           SKIE          + ++E V     + +++  A         I      ++ ++  +  
Sbjct: 265 SKIEVAPQ------IDMNEVVDVPLMLKVLRQEAIALGNECYKINFDIGEDL-KVFGNEE 317

Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
            ++    N++ NA++ TP G QI +S    S+      V+D G G++   L +  + F +
Sbjct: 318 QLRSAMSNLVYNAVNHTPKGTQIDVSWKKNSHG-AEFTVKDNGQGISAEHLPRLTERFYR 376

Query: 763 IPNSQQIRGEGTGLGLPLAK----------AMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +  ++  +  G+GLGL + K                     + S   KGT+    FP
Sbjct: 377 VDKARSRQTGGSGLGLAIVKHALHHHHSHLK----------VSSEIGKGTIFSFTFP 423


>gi|270293653|ref|ZP_06199855.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270275120|gb|EFA20980.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 531

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 83/381 (21%), Positives = 158/381 (41%), Gaps = 21/381 (5%)

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAI--INREGIILSTNRAVSKLFGYPVEDIL 493
           E       +R++      L SI+      I +   +    +L  NR++ + +G       
Sbjct: 162 EIAVREYKEREVRAS-NTLGSIMNNMGVDIYVNSFDSHD-MLYANRSMVEPYGGIEHFWG 219

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK-EEKLLSL-RIIIKKLPFS 551
           +K +       T          ++  +   T           ++    +       +   
Sbjct: 220 KKCWEALYSDKTGECEFCPKRHLIDENGHPTKVYSWDYQRPFDKCWFRVFSAAFAWVDGQ 279

Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
             + +T  DI   K+ + +L  AK  AE     KS FLA +SHEIRTPL +I+GF+ +I 
Sbjct: 280 MAHVITSVDIDHQKKIEEELRVAKDKAEHLDRLKSAFLANMSHEIRTPLNSIVGFASIIA 339

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
                        EY   +  +  L+L +++D+LD++KIE+G ++ +   V + +   + 
Sbjct: 340 ELD----DREERQEYLAIMQENTELLLQLISDILDLAKIEAGTLDYNMGYVDVSDFCKDV 395

Query: 672 ISLVQLYANEKRILIRTSFANNIP--RILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
           +    +   +K + +    A ++P  RI  D + + Q+  N ++NA+ FT  G QI++  
Sbjct: 396 MRNYDIK-EDKAVPVL--LAPDLPDYRIYTDKKRLMQVVTNFINNALKFTSEG-QILLEY 451

Query: 730 T-HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                  ++   V DTG+G+    +      F ++        +GTGLGL + K++++  
Sbjct: 452 HPVEGTGQIEFSVTDTGMGIAPDAVATVFDRFVKLNTF----AKGTGLGLSICKSIIEHL 507

Query: 789 MGKFYIFSTPAKGTLIEIIFP 809
            G     S    G+      P
Sbjct: 508 GGTIGAESELGVGSRFWFRHP 528


>gi|254562688|ref|YP_003069783.1| two component low oxygen sensor histidine kinase with PAS domains,
           FixL [Methylobacterium extorquens DM4]
 gi|254269966|emb|CAX25944.1| two component low oxygen sensor histidine kinase with PAS domains,
           FixL [Methylobacterium extorquens DM4]
          Length = 515

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 70/447 (15%), Positives = 157/447 (35%), Gaps = 23/447 (5%)

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
                      +     D        R   +         +        +         G
Sbjct: 75  HPDDRQARAHAIESVLRDGGSYEIEYR---VVLPNGRGGWLRSRGQVHLDAEGRPHRHRG 131

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
           +     + +  + ++      L SIL+   + + +I+  G+I S N A  +LFGY   + 
Sbjct: 132 VVFSIEEQKQVEAELRAREAHLRSILDTMPEAMVVIDEAGLIHSFNPAAERLFGYAAGEA 191

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPF 550
           + +   + + +         L        R  +   +   G   +     + + I ++  
Sbjct: 192 IGQDVRILMPEAMQDGHAADLERYRQTRQRHIIGTTRCVTGRRHDGSTFPMELAIGEMHS 251

Query: 551 SSC--YSLTMHDISEWKQEKNKLSHAKKIAEKESS--HKSDFLARVSHEIRTPLTAIIGF 606
                ++  ++D++  ++ + +L   +      S      +    ++HE+  PL AI  +
Sbjct: 252 GERTFFTGFINDLTAQRRTEARLQELQSELGHVSRLSAMGEMATTLAHELNQPLGAITNY 311

Query: 607 SEVIKN--QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           +   +       P    R  E  +           I+  L +   +  G+     EPV  
Sbjct: 312 TNGCRRLLAHPDPETIARAQEVLDKAAEQALRARQIIARLREF--VARGETEKRVEPV-- 367

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724
              + EA +L    A E+ I         +  +L D   V+Q+ +N++ NA        +
Sbjct: 368 ATMIEEAGALTLAAAGEQGITAHVVPDPRVGSVLVDRVQVQQVLVNLMRNACEAMQRSSR 427

Query: 725 --IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
             + ++T   S +   + V DTG G+     ++  +PF    ++      G G+GL +++
Sbjct: 428 RELTVATRRVSPDLAEVAVSDTGPGIAEEVADRLFQPFVTTKDA------GMGVGLSISR 481

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFP 809
            +++A+ G+ ++    A G    +  P
Sbjct: 482 TIIEAHGGRLWVEPNAAGGATFRLTLP 508



 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/252 (14%), Positives = 72/252 (28%), Gaps = 20/252 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G +   +    +  G  A + IG  +  +        + H  DL + + T      
Sbjct: 167 IDEAGLIHSFNPAAERLFGYAAGEAIGQDVRILMPE--AMQDGHAADLERYRQTRQRHII 224

Query: 149 LWPIEGTNLYV-----PIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                 T         P++LA   ++S  R F  F GF  ++         A  + L  +
Sbjct: 225 GTTRCVTGRRHDGSTFPMELAIGEMHSGERTF--FTGF--INDLTAQRRTEARLQELQSE 280

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
             H+  +         E     + +   P   + N  +      AH D         +L 
Sbjct: 281 LGHVSRLSA-----MGEMATTLAHELNQPLGAITNYTNGCRRLLAHPDPETIARAQEVLD 335

Query: 264 SEE----SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
                   +               T+K+         +     L+      ++A+     
Sbjct: 336 KAAEQALRARQIIARLREFVARGETEKRVEPVATMIEEAGALTLAAAGEQGITAHVVPDP 395

Query: 320 NLTPETVDKCPI 331
            +    VD+  +
Sbjct: 396 RVGSVLVDRVQV 407


>gi|268317955|ref|YP_003291674.1| PAS/PAC sensor hybrid histidine kinase [Rhodothermus marinus DSM
           4252]
 gi|262335489|gb|ACY49286.1| PAS/PAC sensor hybrid histidine kinase [Rhodothermus marinus DSM
           4252]
          Length = 647

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 69/470 (14%), Positives = 168/470 (35%), Gaps = 43/470 (9%)

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
           +  +         L   +L  ++ +  +   RS+   +        +    +  + +  +
Sbjct: 44  LAALRERP-FDVCLVDYRLGAHDGLSLLRTIRSEGLTLPVIL----LTGQGDLQVDLEAM 98

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILS 476
                +   +           +   + + + E  + +  ++L+A  D I  ++ +G ++ 
Sbjct: 99  AAGAWDYLIKGQIDAQQLERSIRYAVERHRAEERIREQAALLDAARDVIMAVDLDGHVIY 158

Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
            NR+  +L G     +  +P    L+    +++   +  + +                  
Sbjct: 159 WNRSAEQLTGKSAAVVQGRPVPEVLDGIDAALLQEAMQAVQTDG---VWNGELRVHRHNG 215

Query: 537 KLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
           +   L      +  +        +   D++E +Q + +   A+++           ++ +
Sbjct: 216 EDRLLESRWTLVRDAYGRPRSVLIIGTDVTERRQLEQQFLRAQRM-----ESIGRLVSGM 270

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           +H++      I+    ++      P    +       I RS     D+V  +L  ++   
Sbjct: 271 AHDLNNLFVPILLGVRMLAQDTLDP---EKRARALGMIQRSAERGADLVRQVLAFAR--- 324

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712
             M     P+ +   V E   L++       I I T   + +  +  D   ++Q+ +N+ 
Sbjct: 325 -GMEGERVPLDVRTIVQEVAHLLRETFPS-TIRIETRLDDALWPVQGDATQLQQVLMNLC 382

Query: 713 SNAIHFTPSGGQIIIS--------------TTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
            NA    P GG+++++                      V L V DTGVG+ +  L+K  +
Sbjct: 383 VNARDAMPEGGRLLLAAENVEVDPHYARRVLEARPGPYVCLTVSDTGVGIPHDILDKIFE 442

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           PF          G+G+GLGL    ++V ++ G   ++S P +G+   +  
Sbjct: 443 PFFTTKP----VGKGSGLGLSTVYSIVRSHGGFVNVYSEPGRGSTFRVYL 488



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 44/456 (9%), Positives = 115/456 (25%), Gaps = 30/456 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D  G++   +    +  G  A  + G  + +V D +           ++    W G+  
Sbjct: 150 VDLDGHVIYWNRSAEQLTGKSAAVVQGRPVPEVLDGIDAALLQEAMQAVQTDGVWNGELR 209

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           +    G +    ++     +             G                R  +  S   
Sbjct: 210 VHRHNGEDR--LLESRWTLVRDAYGRPRSVLIIGT--DVTERRQLEQQFLRAQRMESIGR 265

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
            +      +      I             + +       A        E+   L  +  +
Sbjct: 266 LVSGMAHDLNNLFVPILLGVRMLAQ----DTLDPEKRARALGMIQRSAERGADLVRQVLA 321

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV-- 326
                +   + L+  T  Q    L   +  S   +  R   +L     +   L    +  
Sbjct: 322 FARGMEGERVPLDVRTIVQEVAHLLRETFPSTIRIETRLDDALWPVQGDATQLQQVLMNL 381

Query: 327 -----DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
                D  P    +         +P +                   T +  P    +   
Sbjct: 382 CVNARDAMPEGGRLLLAAENVEVDPHYARRVLEARPGPYVCLTVSDTGVGIPHDILDKIF 441

Query: 382 KPVMLYRSDR-TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
           +P    +          + +++I  +    + +   P   +               + + 
Sbjct: 442 EPFFTTKPVGKGSGLGLSTVYSIVRSHGGFVNVYSEPGRGSTFRVYLPAAPEARAAEAEV 501

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
            +   +                +G+ +++ E  +L   R   +  GY V    +    + 
Sbjct: 502 AVPTYR-------------GAGEGVLLVDDEPFVLEAAREALEQLGYRVYTATQGREALE 548

Query: 501 LEQNTPSVMNHYLTEILSLDLRQ-TLEKITLGSTKE 535
             +   S +   +T+++  ++   TL +       +
Sbjct: 549 QLEAHASEIRAVITDLVMPEMDGLTLIRAIRERRPD 584


>gi|94266166|ref|ZP_01289877.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
 gi|93453253|gb|EAT03705.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
          Length = 706

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 83/634 (13%), Positives = 194/634 (30%), Gaps = 45/634 (7%)

Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD 252
           P A    L++             +  +      S         +  +     +  A++  
Sbjct: 104 PLATMINLERGEPVRGFGGVILVASHRHDIQDLSDLKGKTIASVTRRSLGGYQTQAYELL 163

Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
               +    +   E+ +P       +   +         +        +           
Sbjct: 164 KQGIDPERDIVLLETEMPHDAAVEAMLSGRADAAMARSGIMEEMIAEGKLDPEAVRILRP 223

Query: 313 AYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                              PF+                L    ++  +   G +S     
Sbjct: 224 RPEPGFPF-------ALSTPFYPEWPFAALAHTDEQTALLVASALYALPHGGTVSRASAI 276

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
              +     +PV     +               +      +  +    A      +    
Sbjct: 277 HGFTVPADYRPVEELMRELRLPPFDQAPRFTLRDAWQRWTIPIVGALVAVGLISLLSLAL 336

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSI--LEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490
                        + +     L ++  L +  +G+  ++  G     N +   + G   E
Sbjct: 337 YW----------ARRQAHREYLRTLNLLASLGEGVYGVDLHGSCTFINSSALAMLGCKEE 386

Query: 491 DILRKPFTVFLEQ-----NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
           ++L +    F              +  +++ L     + LE+       +     + +++
Sbjct: 387 EVLGRDQHQFFHHHTAAGEPYPAQDCPISQTLEDGQDRRLEEWFWRQDGQG--FPVNLVV 444

Query: 546 KKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
             L          +   DIS+ +  + +L        + ++    F   VSH++R PL  
Sbjct: 445 TPLYEGRQLVGAVVAFQDISDRRAVEAEL-------RRSNAELEQFAYVVSHDLRQPLRM 497

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           I G+   +  +      +    E  ++       +  ++  LL+ S++  G+M     P+
Sbjct: 498 INGYM-GLLERALDDKLDDETREMMDFAAGGAQRMDHMLVSLLEYSRV--GRMGEPMAPL 554

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
           +  +AV EA+  ++   NE    +R   +   P ++A      ++  N++ NA+ +   G
Sbjct: 555 ASRQAVEEALEFLEPAINEANATVR--ISGQWPELIASRDEFTRLWQNLIDNALKYRAPG 612

Query: 723 GQIIISTTHTSNEE-VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
               I    T+        ++D G+G    + ++  K F ++    + + EGTG+GL + 
Sbjct: 613 RTPEIDLAVTAKGSFWEFTIKDNGIGFDPAQTDRLFKVFQRLH--TRDKYEGTGVGLAVC 670

Query: 782 KAMVDANMGKFYIFST-PAKGTLIEIIFPLYDTS 814
           + +V+ + G     S    KGT      P+  TS
Sbjct: 671 RKIVERHGGTITAESEGDGKGTTFRFTLPIQHTS 704



 Score = 54.6 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 30/252 (11%), Positives = 68/252 (26%), Gaps = 15/252 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD------ILHIDPNNHIGDLLKR 139
            + +D HG    I+      +G    +++G                +   +  I   L+ 
Sbjct: 361 VYGVDLHGSCTFINSSALAMLGCKEEEVLGRDQHQFFHHHTAAGEPYPAQDCPISQTLED 420

Query: 140 QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199
                 +   W  +G     P++L   P+Y   R+  G                 A  +R
Sbjct: 421 GQDRRLEEWFWRQDG--QGFPVNLVVTPLY-EGRQLVGA--VVAFQDISDRRAVEAELRR 475

Query: 200 LDKKFSHLHEIKK-GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
            + +      +         +               ++ ++   + ++ A     +    
Sbjct: 476 SNAELEQFAYVVSHDLRQPLRMINGYMGLLERALDDKLDDETREMMDFAAGGAQRMDHML 535

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR-NHPSLSAYFDE 317
             LL         +        ++   ++    L+    E+   +      P L A  DE
Sbjct: 536 VSLLEYSRVGRMGEPM--APLASRQAVEEALEFLEPAINEANATVRISGQWPELIASRDE 593

Query: 318 GENLTPETVDKC 329
              L    +D  
Sbjct: 594 FTRLWQNLIDNA 605


>gi|332974890|gb|EGK11803.1| sensor histidine kinase [Desmospora sp. 8437]
          Length = 463

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 66/249 (26%), Positives = 121/249 (48%), Gaps = 7/249 (2%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E        S      E+  + + +F++ VSHEI++PL +I GFS+ ++ +    L    
Sbjct: 218 EIGNLARHFSMMANSLERLEAMRQEFVSNVSHEIQSPLASIQGFSQTLRTE---SLPEEE 274

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             +Y + I+     +  +   LL ++ ++  +  L      +   + E + +++    +K
Sbjct: 275 REQYLSIIENESRRLSSLSKQLLMLASLDKEETALDQTEFDVAAQIREVLRMLEWNWRDK 334

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
            + I+T       RI AD + + Q+  N+L+NAI FT  GG I ++        + ++VR
Sbjct: 335 ELAIKTDLPPT--RIRADAKLLHQVWTNLLNNAIKFTEPGGTITVTIDDFEEGGIEVKVR 392

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGE--GTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           DTGVG+   +L    + F +   S+  +G+  G+GLGL + K +VD + G   + S P  
Sbjct: 393 DTGVGIPGEDLPHIFERFYKADKSRSRKGKESGSGLGLSVVKKVVDLHGGTISVESEPGA 452

Query: 801 GTLIEIIFP 809
           GT I +  P
Sbjct: 453 GTGIRVWLP 461


>gi|149911302|ref|ZP_01899923.1| hypothetical protein PE36_13369 [Moritella sp. PE36]
 gi|149805617|gb|EDM65619.1| hypothetical protein PE36_13369 [Moritella sp. PE36]
          Length = 849

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 90/513 (17%), Positives = 184/513 (35%), Gaps = 43/513 (8%)

Query: 313 AYFDEGENLTPETVDKCP-IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
                 +     T++    I   + S G + + N  FL L  Y+    I           
Sbjct: 348 REQQAYDKQFRLTLENIQFIAVSINSDGIITFCNDFFLNLVGYQKHQVIGKCWV--DTFI 405

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
             KL    A         +         + T        + +++                
Sbjct: 406 PQKLQQQAAEALKQALVQELDQTKVETVVQTNC---GEVVLVSWSSTYSKAHGNNLATAT 462

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
            I  +  + ++ + +++    +L   +E + + + I    G I+  N    +L GY   +
Sbjct: 463 FIGEDVTEHKMEQDQLQ----RLSHAVEQSHNSVMITEITGEIIYVNPVFCELTGYQKHE 518

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
           +L            P V    L + +                K   L   R  I  +  S
Sbjct: 519 VLGITPKFLQSGEMPEVGYDSLWQTIQRGDEWRG--EFHNKKKNGDLFWERARISPVKDS 576

Query: 552 SC----YSLTMHDISEWKQEKNKLSHAKKIAEKESS--HKSDFLARVSHEIRTPLTAIIG 605
           +     +     DI++ KQ  +++   + +  K+         +  ++H++R PL++I  
Sbjct: 577 AGNALYFVAVKQDITKEKQLAHEMQEQEALHAKQDKLAAVGKVVNMIAHDLRNPLSSIKM 636

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
             ++   +           E  +        +  I+ DLL  S+ E        E + L+
Sbjct: 637 VLQIYARK--------EQDELFDISLEQVRYMEAILEDLLSYSRPE----QFKPEWLDLN 684

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ- 724
           + V  A++  +  A EK + I  S+ +N+P + AD   ++Q   N++ NAI    +  Q 
Sbjct: 685 KLVEFAVNSQRRLAKEKDVAIEFSYPHNLPTVYADPIKLRQALQNLIVNAIQAAETSEQA 744

Query: 725 ---IIISTT--HTSNEEVI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
              + ++T    T +  VI + + + G  +    + K  +PF         + +GTGLGL
Sbjct: 745 CPLVTVTTNILLTDSNSVILIDISNNGKSIDPCMVSKVFEPFYTT------KAKGTGLGL 798

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
            + + +++++ G   +      GTL +I  PL 
Sbjct: 799 AIVQKIIESHKGSVRLKPINPIGTLAQIQLPLS 831



 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 9/112 (8%), Positives = 33/112 (29%), Gaps = 5/112 (4%)

Query: 93  GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID-PNNHIGDLLKRQNTWYGKTTLWP 151
           G +  ++    +  G    +++G+    +      +   + +   ++R + W G+     
Sbjct: 499 GEIIYVNPVFCELTGYQKHEVLGITPKFLQSGEMPEVGYDSLWQTIQRGDEWRGEFHNKK 558

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             G   +    ++  P+         F    +      +       +  +  
Sbjct: 559 KNGDLFWERARIS--PVKDSAGNALYF--VAVKQDITKEKQLAHEMQEQEAL 606



 Score = 38.1 bits (87), Expect = 6.0,   Method: Composition-based stats.
 Identities = 21/242 (8%), Positives = 75/242 (30%), Gaps = 11/242 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG---DLLKRQNTWYG 145
           I++ G +   ++     +G    ++IG    D      +           L++  +    
Sbjct: 371 INSDGIITFCNDFFLNLVGYQKHQVIGKCWVDTFIPQKLQQQAAEALKQALVQELDQTKV 430

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +T +    G  + V         +  N   + F G  +       +  + L   +++  +
Sbjct: 431 ETVVQTNCGEVVLVSWSSTYSKAHGNNLATATFIGEDVTEHKMEQDQLQRLSHAVEQSHN 490

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
            +        +    +    +          K++V  +T  +    ++ +     L  + 
Sbjct: 491 SV------MITEITGEIIYVNPVFCELTGYQKHEVLGITPKFLQSGEMPEVGYDSLWQTI 544

Query: 266 ESSLPEQEDFHT--INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
           +     + +FH    N + + ++     +++++  +  +++ +   +             
Sbjct: 545 QRGDEWRGEFHNKKKNGDLFWERARISPVKDSAGNALYFVAVKQDITKEKQLAHEMQEQE 604

Query: 324 ET 325
             
Sbjct: 605 AL 606


>gi|312886118|ref|ZP_07745738.1| multi-sensor signal transduction histidine kinase [Mucilaginibacter
           paludis DSM 18603]
 gi|311301400|gb|EFQ78449.1| multi-sensor signal transduction histidine kinase [Mucilaginibacter
           paludis DSM 18603]
          Length = 559

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 77/355 (21%), Positives = 167/355 (47%), Gaps = 26/355 (7%)

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
           E  ++ +I+ +  D +  ++ +  I+  N+    L G   + ++             ++ 
Sbjct: 224 EKKRIEAIINSMQDAVVGLDDKMTIVFANQVACTLIGQTEDKLIGHH------GPDVALE 277

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN 569
           N  L  +L  D  +          KE       + +     +    + + +I+E++Q   
Sbjct: 278 NDLLRNMLVTDQHKM---KIYADNKESFFNKETVDVVNDGTTIGKVIILKNITEFQQLDE 334

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
                          K++F+A +SHE++TP+++I    +++++ R G + +    +    
Sbjct: 335 --------------AKTNFIATISHELKTPISSIKMSLKLLEDARIGDVNSE-QRQLLQN 379

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           ID     +L I  +LLD++++E+GK+NL+F        V+ A+  V+  A++K+I I+ +
Sbjct: 380 IDDDTRRLLQITGELLDLAQVETGKINLNFGNTHPQNIVNYAVQAVKFIADQKQITIKIN 439

Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749
             +++P + ADL     + +N+LSNA+ ++ S   I ++     +  +   V+D G G+ 
Sbjct: 440 CPDSLPDVQADLDKTTWVLINLLSNAVKYSASKSTIELTVKRHKD-MLEFSVKDYGQGID 498

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
              L +  + + ++P +   +  GTGLGL +AK  ++A  GK  + S   +G+  
Sbjct: 499 ARYLSRIFERYFKVPGAGLDKT-GTGLGLAIAKDFIEAQGGKIGVESQEGEGSRF 552


>gi|120556772|ref|YP_961123.1| integral membrane sensor hybrid histidine kinase [Marinobacter
           aquaeolei VT8]
 gi|120326621|gb|ABM20936.1| integral membrane sensor hybrid histidine kinase [Marinobacter
           aquaeolei VT8]
          Length = 1127

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 83/281 (29%), Positives = 146/281 (51%), Gaps = 15/281 (5%)

Query: 536 EKLLSLRI-----IIKKLPFSSCYSLTM-HDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
             +  L +      +     S   +  +  +I   ++    L  AK+ AE  +  KS +L
Sbjct: 619 GVICWLFVLAHESRVVAEEESRRQTRLLTEEIVAHERTDQALQQAKEQAEAANGAKSRYL 678

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
             +SHE+R+PL AI+G++++++N    P   P   E    I RSG  + D++  LLDISK
Sbjct: 679 TGISHELRSPLNAILGYAQLMENDDSVP---PHRKEALGVIRRSGEYLADLIEGLLDISK 735

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIA 708
           IE+G+++LH + V +   + + +++ +L A EK +       + +P  +  D + ++QI 
Sbjct: 736 IEAGRLDLHRDQVRIGLLMEQLVTMFRLQAEEKGLAFDYHCPHPLPELVTTDEKRLRQIL 795

Query: 709 LNILSNAIHFTPSGGQIIISTTHTSNEEV-ILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
           +N+LSNAI +T  G    +S T     +V    VRDTG G+    +E+  +PF +I N  
Sbjct: 796 INLLSNAIKYTDQGS---VSLTLRYRSQVAEFTVRDTGEGIAAENIERIFRPFERIRNPG 852

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           Q R  GTGLGL + + + +   G   + S P +G++ ++  
Sbjct: 853 QSRT-GTGLGLTITRLLTEIMGGDISVESEPGEGSVFKVSL 892


>gi|332096264|gb|EGJ01267.1| signal transduction histidine-protein kinase atoS [Shigella
           dysenteriae 155-74]
          Length = 403

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 84/368 (22%), Positives = 169/368 (45%), Gaps = 28/368 (7%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            + +         I+E  +DG+  I+R+G + + N A   + GY   +++ +P+++    
Sbjct: 60  AQALRETRTLNDLIIENAADGVIAIDRQGDVTTMNPAAEVITGYQRHELVGQPYSMLF-- 117

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMH 559
           +     +  L  +        LE    G     + + L +   ++  +        +   
Sbjct: 118 DNTQFYSPVLDTLKHGTEHVALEISFPGRD---RTIELSVTTSRIHNTHGEMIGALVIFS 174

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           D++  K+ + +++ A+++A        + +A V+HE+R PLTAI G+ ++++ Q    + 
Sbjct: 175 DLTARKETQRRMAQAERLAT-----LGELMAGVAHEVRNPLTAIRGYVQILRQQTSDLI- 228

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
              + EY + + +  + +  ++  LL+ S+    +    ++ VSL+  V E + LVQ   
Sbjct: 229 ---HQEYLSVVLKEIDSINKVIQQLLEFSRPRHSQ----WQQVSLNALVEETLVLVQTAG 281

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
            + R+   +   N +  I AD   +KQ+ LNIL NA+    + G+I I T   S+ +  +
Sbjct: 282 VQARVDFISELDNELSPINADRELLKQVLLNILINAVQAISARGKIRIQTWQYSDSQQAI 341

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            + D G G+     +K   PF     S      GTGLGL L++ +++A+ G   + S P 
Sbjct: 342 SIEDNGCGIDLSLQKKIFDPFFTTKAS------GTGLGLALSQRIINAHQGDIRVASLPG 395

Query: 800 KGTLIEII 807
            G    +I
Sbjct: 396 YGATFTLI 403



 Score = 39.6 bits (91), Expect = 2.5,   Method: Composition-based stats.
 Identities = 13/117 (11%), Positives = 37/117 (31%), Gaps = 6/117 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G +  ++       G    +++G     +    +    + + D LK          
Sbjct: 84  IDRQGDVTTMNPAAEVITGYQRHELVGQPYSMLF--DNTQFYSPVLDTLKHGTEHVALEI 141

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
            +P     + + +  +   I++ + E  G     I        + +    + ++  +
Sbjct: 142 SFPGRDRTIELSVTTS--RIHNTHGEMIGA--LVIFSDLTARKETQRRMAQAERLAT 194


>gi|302382462|ref|YP_003818285.1| integral membrane sensor hybrid histidine kinase [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302193090|gb|ADL00662.1| integral membrane sensor hybrid histidine kinase [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 580

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 78/312 (25%), Positives = 148/312 (47%), Gaps = 11/312 (3%)

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS-- 562
               +   L   +       L    +G+  + +   + I I  + + +   + +   S  
Sbjct: 121 HMHHVRPLLLSAVVPHSLYFLGLPIMGAVLDGQPQDVLIAIGGVLYMTHLIVAVRQSSMT 180

Query: 563 --EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
               +   ++    ++ AE  S+ KSDFLA VSHEIRTP+ A+I  + +++  R     +
Sbjct: 181 TRALQDANDEARAERRKAEVASAAKSDFLAVVSHEIRTPMNAVISAANLLRRTRL----D 236

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
               E+ + +  +G++++ ++ND+LD SKIE+GKM L  + + L + +   I L +  A+
Sbjct: 237 REQREHVSMLLDAGDVLVGLLNDVLDFSKIEAGKMQLEAQDIDLRDKIGSLIRLWEPKAS 296

Query: 681 EKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-SNEEVI 738
              + ++    +  P RI  D   ++Q+  N+LSNA+ FT  G  I I+      +  +I
Sbjct: 297 ANGVRLKVLIDDAAPARIRTDPLRLQQMLFNLLSNAVKFTEDG-TISIAVDWRAEDGRLI 355

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           + V DTG G+    L      F Q+      +  GTGLGL +++ + +   G+    S  
Sbjct: 356 VSVADTGCGIPADRLAHIFDSFEQVDAGTTRKYGGTGLGLAISRRLAEIMGGRLTAESVE 415

Query: 799 AKGTLIEIIFPL 810
            +G++  +  P+
Sbjct: 416 GEGSVFTLSLPV 427


>gi|226286806|gb|EEH42319.1| two-component system protein A [Paracoccidioides brasiliensis Pb18]
          Length = 692

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 93/363 (25%), Positives = 166/363 (45%), Gaps = 24/363 (6%)

Query: 457 ILEAT-SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP--SVMNHYL 513
           ++++     I ++  EG + + N   S L GY  E+I+ + F++F              L
Sbjct: 186 LIDSVKHVVIFMLTPEGNVATWNDGASALKGYAAEEIIGQHFSIFYSPEDRLKDKPRKEL 245

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNK 570
            + L       LE       K+       ++I  +        +S    DI++ K+ +++
Sbjct: 246 AKCLQDGK---LEDEGWRVRKDGTKFFANVVISPVYRFRVLVGFSKVTRDITDRKETEDR 302

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           L       E+ +  KS FLA +SHEIRTP+  ++    ++K+       N +  EYA  I
Sbjct: 303 LV---AAYEESAKLKSQFLANMSHEIRTPMHGMLAALTLLKDTGL----NDKQDEYAKII 355

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
           + SG+++L ++ND+LD SK+ SG   L+ + +S+ +    AI   Q       I + +  
Sbjct: 356 ENSGSILLRVINDILDYSKLSSGTFTLNSDLLSVQQIHRNAIQHCQTLLKP-GITLTSEV 414

Query: 691 ANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDTG 745
           A  IP     D    +QI  N+L N+  FT SG  I + +  T++E     +   V DTG
Sbjct: 415 AEAIPEFSKGDPLRYQQILQNLLMNSAKFTESGS-IHVRSKLTNDELSSHRIYTEVIDTG 473

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP-AKGTLI 804
           +G+     ++   PF Q+ +S   + +G GLGL + + ++D   G       P  +G++ 
Sbjct: 474 IGVAAEAAKRLFDPFTQVFSSTGEQYQGIGLGLAICRNLIDFMGGSIGYHPNPDGQGSVF 533

Query: 805 EII 807
              
Sbjct: 534 WFS 536



 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/142 (13%), Positives = 40/142 (28%), Gaps = 10/142 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI--DPNNHIGDLLKRQNTW 143
            + +   G +   ++      G  A ++IG              D          +    
Sbjct: 195 IFMLTPEGNVATWNDGASALKGYAAEEIIGQHFSIFYSPEDRLKDKPRKELAKCLQDGKL 254

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +      +GT  +  + ++  P+Y R R   GF         R   D +    RL   
Sbjct: 255 EDEGWRVRKDGTKFFANVVIS--PVY-RFRVLVGFSKV-----TRDITDRKETEDRLVAA 306

Query: 204 FSHLHEIKKGHSSVEKEKYDIF 225
           +    ++K    +    +    
Sbjct: 307 YEESAKLKSQFLANMSHEIRTP 328


>gi|225684652|gb|EEH22936.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
          Length = 743

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 93/363 (25%), Positives = 166/363 (45%), Gaps = 24/363 (6%)

Query: 457 ILEAT-SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP--SVMNHYL 513
           ++++     I ++  EG + + N   S L GY  E+I+ + F++F              L
Sbjct: 186 LIDSVKHVVIFMLTPEGNVATWNDGASALKGYAAEEIIGQHFSIFYSPEDRLKDKPRKEL 245

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNK 570
            + L       LE       K+       ++I  +        +S    DI++ K+ +++
Sbjct: 246 AKCLQDGK---LEDEGWRVRKDGTKFFANVVISPVYRFRVLVGFSKVTRDITDRKETEDR 302

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           L       E+ +  KS FLA +SHEIRTP+  ++    ++K+       N +  EYA  I
Sbjct: 303 LV---AAYEESAKLKSQFLANMSHEIRTPMHGMLAALTLLKDTGL----NDKQDEYAKII 355

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
           + SG+++L ++ND+LD SK+ SG   L+ + +S+ +    AI   Q       I + +  
Sbjct: 356 ENSGSILLRVINDILDYSKLSSGTFTLNSDLLSVQQIHRNAIQHCQTLLKP-GITLTSEV 414

Query: 691 ANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDTG 745
           A  IP     D    +QI  N+L N+  FT SG  I + +  T++E     +   V DTG
Sbjct: 415 AEAIPEFSKGDPLRYQQILQNLLMNSAKFTESGS-IHVRSKLTNDELSSHRIYTEVIDTG 473

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP-AKGTLI 804
           +G+     ++   PF Q+ +S   + +G GLGL + + ++D   G       P  +G++ 
Sbjct: 474 IGVAAEAAKRLFDPFTQVFSSTGEQYQGIGLGLAICRNLIDFMGGSIGYHPNPDGQGSVF 533

Query: 805 EII 807
              
Sbjct: 534 WFS 536



 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/142 (13%), Positives = 40/142 (28%), Gaps = 10/142 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI--DPNNHIGDLLKRQNTW 143
            + +   G +   ++      G  A ++IG              D          +    
Sbjct: 195 IFMLTPEGNVATWNDGASALKGYAAEEIIGQHFSIFYSPEDRLKDKPRKELAKCLQDGKL 254

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +      +GT  +  + ++  P+Y R R   GF         R   D +    RL   
Sbjct: 255 EDEGWRVRKDGTKFFANVVIS--PVY-RFRVLVGFSKV-----TRDITDRKETEDRLVAA 306

Query: 204 FSHLHEIKKGHSSVEKEKYDIF 225
           +    ++K    +    +    
Sbjct: 307 YEESAKLKSQFLANMSHEIRTP 328


>gi|75909242|ref|YP_323538.1| GAF sensor signal transduction histidine kinase [Anabaena
           variabilis ATCC 29413]
 gi|75702967|gb|ABA22643.1| GAF sensor signal transduction histidine kinase [Anabaena
           variabilis ATCC 29413]
          Length = 585

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 80/260 (30%), Positives = 135/260 (51%), Gaps = 16/260 (6%)

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
              +L  A++ AE+ S  KS+FLA VSHEIRTPL  +IGF ++I       +      ++
Sbjct: 314 LYKELEAARQKAEEASRLKSEFLANVSHEIRTPLNGMIGFLKLILEGMADDV--EEKNQF 371

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
            +   +    +L+I+ND+LDI+KIE+GKM L   P+ L+E  S+  + ++  A  K +  
Sbjct: 372 LSEAHQLSLHLLNIINDILDIAKIEAGKMELVCAPIKLEELFSDVDNFMRPQAEVKNLSF 431

Query: 687 RTSFAN--NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST-------THTSN--- 734
           R       +   +  + + + Q+ LNI+ NAI FT  GG I +S                
Sbjct: 432 RMQLPPTSDEIVVQGNYQRLLQVMLNIVGNAIKFTHEGG-ITVSADVVLKKGKLQEQHFP 490

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
             V +R+ DTG+G++  + +K  + F Q+  S+  +  GTGLGL +++ +V+   G+ + 
Sbjct: 491 GMVRVRIADTGIGVSLDQQDKLFQLFSQVDGSRTRQYGGTGLGLAISQKLVETMGGEVHF 550

Query: 795 FS-TPAKGTLIEIIFPLYDT 813
           +S     G+ +    PLY  
Sbjct: 551 YSLGEGLGSTVTFTVPLYQQ 570


>gi|88857213|ref|ZP_01131856.1| Signal transduction histidine kinase [Pseudoalteromonas tunicata
           D2]
 gi|88820410|gb|EAR30222.1| Signal transduction histidine kinase [Pseudoalteromonas tunicata
           D2]
          Length = 732

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 83/259 (32%), Positives = 136/259 (52%), Gaps = 16/259 (6%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           KL+ AK  AE     KS FLA +SHEIRTP+  I+GF +++++    P       ++ ++
Sbjct: 352 KLNQAKLDAESSEQLKSQFLANMSHEIRTPMNGILGFVQLLQSSHLTP----EQEDFLHH 407

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I+ S  ++L I+ND+LD+SKIE+ ++ LH  P +L + + + ++L +     K I I  +
Sbjct: 408 INSSSKMLLTIINDILDLSKIEANQLTLHVMPCNLTQILQDVVTLFKPACLAKGIKIEFT 467

Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS----TTHTSNEEVILRVRDTG 745
            AN    +  D   VKQI  N++SNAI FT  G ++ ++    T    N +  + V DTG
Sbjct: 468 -ANAAYWVYCDEMRVKQIFTNLISNAIKFTLKG-KVTLTLKKITATDENTQFEVNVEDTG 525

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+ +  + K  KPF Q       R  GTGLGL ++K +++   G   + S    GT   
Sbjct: 526 IGIADDVIGKLFKPFIQAQGDTTRRFGGTGLGLSISKRLIELMQGNISLTSKEHVGTQFL 585

Query: 806 IIF------PLYDTSHPHD 818
           +        P++  +   D
Sbjct: 586 VRLNFKNSAPIFLETAAAD 604


>gi|238755123|ref|ZP_04616470.1| Phosphate regulon sensor protein phoR [Yersinia ruckeri ATCC 29473]
 gi|238706683|gb|EEP99053.1| Phosphate regulon sensor protein phoR [Yersinia ruckeri ATCC 29473]
          Length = 446

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 65/358 (18%), Positives = 130/358 (36%), Gaps = 35/358 (9%)

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
           +  S  E+  D + +   EG I   N     L G+   +   +     L     +     
Sbjct: 107 RFRSGAESLPDAVVMTTVEGNIFWCNGLAQNLLGFRWPEDNGQHILNLLRYPEFAQYLQL 166

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572
                         +           +  R++           +   D+++ +Q +    
Sbjct: 167 QE----------FSRPLTLPLNNGHHVEFRVMPY---SEGQLLMVARDVTQMRQLEG--- 210

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
                       + +F A VSHE+RTPLT + G+ E++ +Q   P    +     N +  
Sbjct: 211 -----------ARRNFFANVSHELRTPLTVLQGYLEMMHDQDLEPALRSKA---LNTMQE 256

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY-ANEKRILIRTSFA 691
               +  +V  LL +S+IE+       E V +   +      VQ   A    I  R +  
Sbjct: 257 QTKRMDGLVKQLLTLSRIEAAPNIDMSERVDIPLMLKVLQHEVQALSAGRHEITFRVN-- 314

Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751
               ++  +   ++    N++ NA++ TP+G +I +    T       +V D G G+ + 
Sbjct: 315 -EQLKVFGNEDQLRSAVSNLVYNAVNHTPTGTKIEVCWQLTPQG-AQFQVSDNGPGIGSE 372

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            + +  + F ++  ++  +  G+GLGL + K  +  +  +  + S    GT      P
Sbjct: 373 HVPRLTERFYRVDKARSRQTGGSGLGLAIVKHALSHHDTRLDVMSEIGLGTRFVFTLP 430


>gi|13475583|ref|NP_107147.1| two-component sensor [Mesorhizobium loti MAFF303099]
 gi|14026335|dbj|BAB52933.1| two-component sensor [Mesorhizobium loti MAFF303099]
          Length = 638

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 83/374 (22%), Positives = 153/374 (40%), Gaps = 18/374 (4%)

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRKP 496
           +D +  +R +    M   +++    D + I + +G  ++ N A +++ G   VE+++ K 
Sbjct: 7   LDRQQRRRDLSRSNMIYRAMVRELPDCLNIKDVDGRFIAANPATAEMLGAASVEELIGKT 66

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CY 554
              F  ++            L       +E+  +    ++  L       +         
Sbjct: 67  DFDFYSKDVAERFRQDEMGALKAGQTLRIEQPAVFPDGKQGWLYTLKAPFRDEAGKITGV 126

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                +I+E K+               +  K+DF++ VSHE+RTPLT+I G   +I    
Sbjct: 127 ITYNREITEQKRN--------------AQLKNDFISTVSHELRTPLTSIRGSLGLIAAGV 172

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
            G L  P+     N    +   ++ ++ND+LD+ KIESG +    + + +   + +AI+ 
Sbjct: 173 VGELP-PKAANLVNIAHTNSERLVLLINDILDMEKIESGVIAFKIKQMPVRPIMEQAIAA 231

Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
              Y  E RI I             D   + Q+  N+LSNAI F+ + G +++       
Sbjct: 232 SSNYMAESRIRIVLVDDAPRAEANIDPDRLHQVMANLLSNAIKFSHADGTVMVKLQRRDR 291

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
           + + + V D G G+      +    F Q   S   +  GTGLGL + K +V+   G    
Sbjct: 292 DMLRISVIDQGAGIPEAFRSRIFGKFEQADASSTRKKGGTGLGLSIVKTIVEKLGGAVSF 351

Query: 795 FSTPAKGTLIEIIF 808
            +   KGT   +  
Sbjct: 352 ETEEEKGTSFHVDL 365



 Score = 54.6 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 30/327 (9%), Positives = 72/327 (22%), Gaps = 25/327 (7%)

Query: 90  DAHGYLKEISEELPKTIG-NYAFKMIGMRL-----CDVSDILHIDPNNHIGDLLKRQNTW 143
           D  G     +    + +G     ++IG         DV++    D        LK   T 
Sbjct: 38  DVDGRFIAANPATAEMLGAASVEELIGKTDFDFYSKDVAERFRQDEMG----ALKAGQTL 93

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +      +G   ++       P      + +G     ++  NR   +     KR  + 
Sbjct: 94  RIEQPAVFPDGKQGWLYTL--KAPFRDEAGKITG-----VITYNREITE----QKRNAQL 142

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
            +                            +      ++     AH +          + 
Sbjct: 143 KNDFISTVSHELRTPLTSIRGSLGLIAAGVVGELPPKAANLVNIAHTNSERLVLLINDIL 202

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
             E        F    +      +      +N              +  A  +   +   
Sbjct: 203 DMEKIESGVIAFKIKQMPVRPIMEQAIAASSNYMAESRIRIVLVDDAPRAEANIDPDRLH 262

Query: 324 ETVDKC--PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
           + +         F ++ G +               +  I+   G+     +         
Sbjct: 263 QVMANLLSNAIKFSHADGTVMVKLQR--RDRDMLRISVIDQGAGIPEAFRSRIFGKFEQA 320

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRE 408
                 +   T +  S     ++    
Sbjct: 321 DASSTRKKGGTGLGLSIVKTIVEKLGG 347


>gi|170739363|ref|YP_001768018.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
 gi|168193637|gb|ACA15584.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
          Length = 1059

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 95/762 (12%), Positives = 198/762 (25%), Gaps = 96/762 (12%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151
            G    I++ L +                                 +             
Sbjct: 199 AGRPLIINDTLAEI------------------------APREAKTFQDIGIAATICMPLV 234

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFG-IVHVNRVDNDPRALGKRLDKKFSHLHEI 210
             G    +     A P      E +  R        +       A  +  + +   L + 
Sbjct: 235 KRGRLTALMAIHHAAPHRWSQAELALIREVTERCWAHIERVGAEANLRMSEGRLRALVDA 294

Query: 211 KKGHSSVEKEKYDIFSQQSPPP-HLRMKNKVSSLTEYYAHKDDVLKTEKY-PLLTSEESS 268
                      ++   +         M        + Y   +D  + E            
Sbjct: 295 TADAVYRMSPDWEEMRRLDGGGFLADMAEPSPRWRDLYLEPEDRPEVEAAIADAIRRRGL 354

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS----LSAYFDEGENLTPE 324
              +      +            L + + E  E+    +  +      A   E E     
Sbjct: 355 FALEHRVRRADGGIGWTLSRAVPLLDGAGEVIEWFGTASDVTFRHEAEARLRESEARFRT 414

Query: 325 TVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
             D  P+  ++    G   Y N  +   T     + +   G L  +    +     A   
Sbjct: 415 MADDAPVMTWITEASGTCIYLNRRWFEFTGQTPEEGL-GLGWLDAVHPDDRGRSEQAFLA 473

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
               R     I    RL   + +  +          + +     +   G   +  + R  
Sbjct: 474 ANARR---EPIRVEYRL---RRHDGSYRWALDSASPRLDPDGTFLGYFGSVVDIDERREA 527

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
           +        +L ++ +     +     +G +   N    +  G   E++L   +   +  
Sbjct: 528 EA-------RLRTLTDVVPAFVWFAAPDGRLHFMNSRWCEYTGQTPEEVLPDGWIAAVHP 580

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMH 559
           +  +       E  +  +    E        +          + L  +S     +  T  
Sbjct: 581 DDQAQTAAIWAEARAGGVS--YEVELRYRRHDGAYRWYVARAEPLRDASGRVTTWFGTST 638

Query: 560 DISEWKQEKNKLSHAKK--------------------IAEKESSHKSDFLARVSHEIRTP 599
           DI + K  +  L    +                       ++          V+H+    
Sbjct: 639 DIHDRKLAEASLRELNETLESRVAERTAELLKAEEALRQSQKMEAVGQLTGGVAHDFNNL 698

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           LT I    + ++      L   R   Y + +  + +    + + LL  ++    +  L  
Sbjct: 699 LTIIRSSVDFLRR---PDLPEARKARYLDAVSDTVDRAAKLTSQLLAFAR----RQTLDP 751

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719
           +  SL E +     L++      RI + T        + ADL   +   +N+  NA    
Sbjct: 752 QVFSLGERLRAVADLLET-VTGARIRVVTEIPETPCFVRADLSQFETALVNMAVNARDAM 810

Query: 720 PSGGQIIISTTH------------TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
              G + +  T             ++     + + DTG G+     E+  +PF       
Sbjct: 811 EGEGTLTLRLTCAGRLPPIRGHAGSTQPFAAVSLSDTGTGIAPEVQERIFEPFFTTK--- 867

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
              G+GTGLGL         + G   + S   +GT   +  P
Sbjct: 868 -EVGKGTGLGLSQVFGFAKQSGGDVDVASVLGRGTTFTLYLP 908



 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 49/547 (8%), Positives = 120/547 (21%), Gaps = 78/547 (14%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN-TWY 144
            W     G L   ++   +  G    + +G RL +V           I      +  ++ 
Sbjct: 4   IW--GPEGILVY-NQGYAEVCGPRHPQALGGRLLEVWPEARAFNARVIESGRAGRALSFR 60

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            +       G    V +DL   P+   +    G      V                + +F
Sbjct: 61  AREFELRRSGRPETVWMDLDYTPLLGEDGAPLGV--LATVLDITARVLGERRVAGSESRF 118

Query: 205 SHLHEIKKGHSSVEKEKYDI------------------------------------FSQQ 228
             L  + +  +        +                                        
Sbjct: 119 RFLDRLAQATAEARDADAVLTVTTRLVGEHLGLSNCAYADMDPDGDGFTIRGNWHAPGSP 178

Query: 229 SPPPHLRMKN--------------KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQED 274
           S   H R+ +               + + T       +    +   +  +    L ++  
Sbjct: 179 SILGHYRLADFGALAVRELNAGRPLIINDTLAEIAPREAKTFQDIGIAATICMPLVKRGR 238

Query: 275 FHTI-----NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
              +            +     ++  ++  + ++         A     E      VD  
Sbjct: 239 LTALMAIHHAAPHRWSQAELALIREVTERCWAHI---ERVGAEANLRMSEGRLRALVDAT 295

Query: 330 PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389
               +  S             L     + D+         L             +     
Sbjct: 296 ADAVYRMSPDW-----EEMRRLDGGGFLADMAEPSPRWRDLYLEPEDRPEVEAAIADAIR 350

Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449
            R   A     H ++                 +   E +   G   +       + ++  
Sbjct: 351 RRGLFALE---HRVRRADGGIGWTLSRAVPLLDGAGEVIEWFGTASDVTFRHEAEARLRE 407

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
              +  ++ +       I    G  +  NR   +  G   E+ L   +   +  +     
Sbjct: 408 SEARFRTMADDAPVMTWITEASGTCIYLNRRWFEFTGQTPEEGLGLGWLDAVHPDDRGRS 467

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWK 565
                 + +   R+ +         +                      Y  ++ DI E +
Sbjct: 468 EQAF--LAANARREPIRVEYRLRRHDGSYRWALDSASPRLDPDGTFLGYFGSVVDIDERR 525

Query: 566 QEKNKLS 572
           + + +L 
Sbjct: 526 EAEARLR 532



 Score =  100 bits (250), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 32/275 (11%), Positives = 66/275 (24%), Gaps = 9/275 (3%)

Query: 55  TDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI 114
           +D      +     +SE  F        V  TW  +A G    ++    +  G    + +
Sbjct: 393 SDVTFRHEAEARLRESEARFRTMADDAPV-MTWITEASGTCIYLNRRWFEFTGQTPEEGL 451

Query: 115 GMRLCDVSDILHI-DPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNR 173
           G+   D                   R+     +  L   +G+  Y     +A P    + 
Sbjct: 452 GLGWLDAVHPDDRGRSEQAFLAANARREPIRVEYRLRRHDGS--YRWALDSASPRLDPDG 509

Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH 233
            F G+  FG V       +  A  + L                +              P 
Sbjct: 510 TFLGY--FGSVVDIDERREAEARLRTLTDVVPAFVWFAAPDGRLHFMNSRWCEYTGQTPE 567

Query: 234 LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293
             + +   +        D       +    +   S   +  +   +            L+
Sbjct: 568 EVLPDGWIA---AVHPDDQAQTAAIWAEARAGGVSYEVELRYRRHDGAYRWYVARAEPLR 624

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
           + S     +             +       ET++ 
Sbjct: 625 DASGRVTTWFGTSTDIHDRKLAEASLRELNETLES 659



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/300 (9%), Positives = 68/300 (22%), Gaps = 8/300 (2%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI-GDLLKRQNTW 143
           F W     G L  ++    +  G    +++                  I  +      ++
Sbjct: 541 FVWFAAPDGRLHFMNSRWCEYTGQTPEEVLPDGWIAAVHPDDQAQTAAIWAEARAGGVSY 600

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +      +G   Y      A P+   +   +    FG            A  + L++ 
Sbjct: 601 EVELRYRRHDG--AYRWYVARAEPLRDASGRVT--TWFGTSTDIHDRKLAEASLRELNET 656

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
                  +       +E      +      L                   +   + P L 
Sbjct: 657 LESRVAERTAELLKAEEALRQSQKMEAVGQL-TGGVAHDFNNLLTIIRSSVDFLRRPDLP 715

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
               +        T++       Q     +  + +   +       +++   +       
Sbjct: 716 EARKARYLDAVSDTVDRAAKLTSQLLAFARRQTLDPQVFSLGERLRAVADLLETVTGARI 775

Query: 324 ETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
             V + P            +   + L+     + D +E  G L+  L             
Sbjct: 776 RVVTEIPETPCFVRADLSQF--ETALVNMAVNARDAMEGEGTLTLRLTCAGRLPPIRGHA 833



 Score = 39.6 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 16/134 (11%), Positives = 40/134 (29%), Gaps = 15/134 (11%)

Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
           +AI   EGI++  N+  +++ G      L       +     +     +    +      
Sbjct: 2   VAIWGPEGILVY-NQGYAEVCGPRHPQALGGRLLE-VWPEARAFNARVIESGRAGRALSF 59

Query: 525 LEKITLGSTKEE-KLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAE 579
             +          + + + +    L            T+ DI+     + ++        
Sbjct: 60  RAREFELRRSGRPETVWMDLDYTPLLGEDGAPLGVLATVLDITARVLGERRV-------- 111

Query: 580 KESSHKSDFLARVS 593
             S  +  FL R++
Sbjct: 112 AGSESRFRFLDRLA 125


>gi|152995210|ref|YP_001340045.1| integral membrane sensor hybrid histidine kinase [Marinomonas sp.
           MWYL1]
 gi|150836134|gb|ABR70110.1| integral membrane sensor hybrid histidine kinase [Marinomonas sp.
           MWYL1]
          Length = 601

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 123/246 (50%), Gaps = 11/246 (4%)

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
            +L  AK+ AE+    K+DFLA ++HEIRTP+  ++G ++++         N +  +   
Sbjct: 207 EELERAKEAAERAGQAKADFLAAMTHEIRTPMNGVLGMAQLLAMGDL----NEKQKQQVT 262

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I+ +G  ++ I+N++LD SKI + ++ L   P      V+E   L+     +K I +++
Sbjct: 263 VINNAGRTLMHIINNILDYSKINAEQLALEKIPFDTRNVVNEVKLLLAPQFEKKPITLKS 322

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-----VILRVRD 743
           S  N    +L D   + QI  N++ NA  FT  G +I I  +   ++      +   V+D
Sbjct: 323 SIENIPSFVLGDPFRLHQILYNLVGNAFKFTEKG-EISIEVSSKESDAENTVILSFSVKD 381

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TG+G++  + E+  + F Q+ +       GTGLGL + + +V+   G   + S    G+ 
Sbjct: 382 TGIGISPEDQEQIFEQFYQV-SHFDPNIRGTGLGLSITQRLVELMGGTISLTSEIGVGSR 440

Query: 804 IEIIFP 809
             +  P
Sbjct: 441 FTVDIP 446


>gi|126462925|ref|YP_001044039.1| PAS/PAC sensor hybrid histidine kinase [Rhodobacter sphaeroides
           ATCC 17029]
 gi|126104589|gb|ABN77267.1| PAS/PAC sensor hybrid histidine kinase [Rhodobacter sphaeroides
           ATCC 17029]
          Length = 941

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 113/761 (14%), Positives = 237/761 (31%), Gaps = 68/761 (8%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
            +DA   L          +        G  L D            +   ++       + 
Sbjct: 39  ELDADERLLRGHPGWLDRLPTLEPMAPGQGLQDFLPADLATEVRRVLAEVETTGAPVSRD 98

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                 G  +++ I  A LP  + +R                         +  +  ++L
Sbjct: 99  WQVRQAGARVWLAISAARLPPLAPDRRPGHAVMICDTTELHAQRKQADRLGKFAQLTTNL 158

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
             +   H  +E        Q   P        + ++ +            +  +L    +
Sbjct: 159 VIVTDPHQRIEWVNAAFEQQTGHPGQTVRGQPLCAVLQGEPAPGGCGDRLRA-MLAEGRT 217

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET-- 325
           +  E E        ++        L ++      Y++  +  +     +E          
Sbjct: 218 ARAEVEAT-AACGRRFWLDVSLQPLIDDEGALDGYMAVASDITAHKRQEEQLAAMAAEAR 276

Query: 326 ---------VDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
                    VD  P  F  +     L   NP +       +   +  A     L  A + 
Sbjct: 277 ATRARLAAAVDVLPDGFAYFDAEDRLVVFNPQYRDCYPGAAAAIVPGASFELILRQAVQS 336

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
            D      +     +   +AA    H    N++              +   +  + G+  
Sbjct: 337 GD-----ILEARGREEEWLAARLAAHYRGSNQQEQQLADGRWLRVIERQTPDGGRVGLRV 391

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILR 494
           +    ++ +++  I      + ++A+ DGIA  + EG  +  N A  ++FG    ++IL 
Sbjct: 392 DVTALKLAEQRTRI---DFSATMDASQDGIAFTDPEGRYIYMNPAHREMFGIATEDEILG 448

Query: 495 KPFTVFLEQNTPSVMNH-YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553
           + +      +    +    L  +LS    +      +G  ++   L   + +  L     
Sbjct: 449 RSWRELYAGDVADHIATTALPALLSTGGWRG---ELIGRRRDGSELPQEVSLT-LKADGG 504

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSH--KSDFLARVSHEIRTPLTAIIGFSEVIK 611
                 DIS   +E+ +    ++  +            + ++H++   L AI G + +I+
Sbjct: 505 IICISRDISRRLREQQERMRLREELQMAQRREVIGQLASGLAHDLNNLLAAIGGSALLIQ 564

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
           + + G         +A  I  +      +V   L +     GK   +   + L   + EA
Sbjct: 565 DLQSGAAEV-----HAQRILAATEQAGALVRRFLTL-----GKRQSNRSRIDLCPLLQEA 614

Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT------PSGGQI 725
             LVQ      R  +  +  +    I AD   + Q+ LN++ NA            G +I
Sbjct: 615 ADLVQAGL-RNRTRLTLALPDAPIWIEADPTDILQVVLNLVINARDAISTAPPREGGHEI 673

Query: 726 IISTT----------------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
            ++                        V + V D+G G+      +  +P+     +   
Sbjct: 674 TVALAPAGPAQLAQTYAVGAPCADRRYVSMTVSDSGPGIEPAMQARVFQPYFSTKGAA-- 731

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
              GTGLGL +   ++ AN G   + S P +GT   +++P+
Sbjct: 732 ---GTGLGLAIVTGVLTANHGAIALQSAPGEGTRFTVLWPV 769



 Score = 46.6 bits (109), Expect = 0.017,   Method: Composition-based stats.
 Identities = 16/135 (11%), Positives = 46/135 (34%), Gaps = 8/135 (5%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           R  +R +E E  +  + L+     +  ++ +  +L  +                +    F
Sbjct: 13  RDQQRALEQERSRTQAALQVMPHMLIELDADERLLRGHPGWLDRLPTLEPMAPGQGLQDF 72

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF-----SSCYS 555
           L  +  + +   L E+ +     + +     +      + L I   +LP         ++
Sbjct: 73  LPADLATEVRRVLAEVETTGAPVSRDWQVRQA---GARVWLAISAARLPPLAPDRRPGHA 129

Query: 556 LTMHDISEWKQEKNK 570
           + + D +E   ++ +
Sbjct: 130 VMICDTTELHAQRKQ 144


>gi|259909469|ref|YP_002649825.1| hybrid sensory histidine kinase BarA [Erwinia pyrifoliae Ep1/96]
 gi|224965091|emb|CAX56623.1| Signal transduction histidine-protein kinase [Erwinia pyrifoliae
           Ep1/96]
          Length = 909

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 87/334 (26%), Positives = 151/334 (45%), Gaps = 19/334 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           LF Y +   +  P    +               L   +   +             +++ +
Sbjct: 193 LFAYRLMRDVTGPIRNMVSTVDR-----IRRGQLDSRVEGHMLGELDVLKNGINSMAMSL 247

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                           D+ E  ++      +L  AK+ A++ +  KS+FLA +SHE+RTP
Sbjct: 248 TAYHEEMQQNIDQATSDLRETLEQMEIQNVELDLAKRRAQEAARIKSEFLANMSHELRTP 307

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+     Q    + N    +Y + I+RS N +L I+ND+LD SK+E+GK+ L  
Sbjct: 308 LNGVIGFT----RQTLKTMLNSTQRDYLHTIERSANNLLSIINDVLDFSKLEAGKLVLET 363

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P  L   + E + L+   A+EK + +  +  +++P   + D   ++QI +N+L NAI F
Sbjct: 364 IPFPLRATLDEVVVLLAQSAHEKGLELTLNIQSDVPDNAIGDPLRMQQIIVNLLGNAIKF 423

Query: 719 TPSGGQIIISTTHTS----NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           T SG  I I     +      E+ +++ DTG+G++  +  K  + F Q   S   R  GT
Sbjct: 424 TESG-NIDIRVEKRALSNNRMELEVQIHDTGIGISEKQQSKLFQAFRQADASISRRHGGT 482

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           GLGL + + +V+   G+    S   +G+      
Sbjct: 483 GLGLVITQKLVNEMGGEISFHSRLHRGSTFWFHI 516


>gi|329849356|ref|ZP_08264202.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family
           protein [Asticcacaulis biprosthecum C19]
 gi|328841267|gb|EGF90837.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family
           protein [Asticcacaulis biprosthecum C19]
          Length = 535

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 78/280 (27%), Positives = 133/280 (47%), Gaps = 8/280 (2%)

Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
           L  I   L            + + +++   L  A + A   ++ KS+FLA +SHEIRTP+
Sbjct: 119 LSTIRAALRDRERQYRMRIYLEDRERQTRALEIAVEKANAANTAKSEFLANMSHEIRTPM 178

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
            AI+G S ++   +       +  +Y + +  S   +L ++NDLLDI+KIE+  + +   
Sbjct: 179 NAILGLSTIL---KHSQPLTEQQHKYIDTLGASSESLLMLINDLLDIAKIEASGIEIEHI 235

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFT 719
           P  LD+ + +   ++ L A EK + +R    +        D   ++QI  N+ SNAI FT
Sbjct: 236 PFQLDQVIRDIADMMGLKAREKDLDLRLDLDHIQGKWFCGDPARLRQIVTNLCSNAIKFT 295

Query: 720 PSGGQIIISTTHTSNE---EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
            SG ++ I            + + V DTGVG+   +L++    F Q  N+   +  GTGL
Sbjct: 296 DSG-EVAIIVASAPQGRHCHITISVTDTGVGIAPDKLDRIFAKFTQADNTISRKFGGTGL 354

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           GL ++K + +   G   + S   +G+   +  PL     P
Sbjct: 355 GLAISKTLAELMGGTIAVESELDRGSRFTLALPLRLADRP 394


>gi|310796709|gb|EFQ32170.1| hsp90-like protein [Glomerella graminicola M1.001]
          Length = 2508

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 78/258 (30%), Positives = 129/258 (50%), Gaps = 16/258 (6%)

Query: 562  SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
            ++ K  + +     K+AE+ +  KS FLA VSHE+RTPL  +IG SE++K+       + 
Sbjct: 1930 TKAKHAEAEAKRNVKLAEEAAKAKSIFLANVSHELRTPLNGVIGNSELLKDSEL----DK 1985

Query: 622  RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV----QL 677
               E A+ I  S  L+L ++ND+LD S++E+ KM L+    + +E V E +  V    + 
Sbjct: 1986 DQQEMADNIKVSAELLLTVINDILDFSRMEADKMKLYVIAFNPEEMVREVVRAVSYSNRQ 2045

Query: 678  YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT----S 733
               +K + I          I  D   + Q+  N++SN++ FT  G  I I          
Sbjct: 2046 KTKQKNVKIIQDINLPSMLIFGDPIRLHQVLGNLISNSLKFTEDGS-ITIGARVESETND 2104

Query: 734  NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD-ANMGKF 792
               ++ RV+DTG+G+   +L K  +PF Q   S   +  G+GLGL + K++++    GK 
Sbjct: 2105 KATLLFRVQDTGIGIPQQQLVKLFQPFSQADTSTARKYGGSGLGLSICKSLIETMMKGKI 2164

Query: 793  YIFSTPAKGTL--IEIIF 808
             + S    GT    ++ F
Sbjct: 2165 QLDSQEGVGTTAWFKVTF 2182


>gi|294827940|ref|NP_711926.2| histidine kinase/response regulator hybrid protein [Leptospira
           interrogans serovar Lai str. 56601]
 gi|293385785|gb|AAN48944.2| histidine kinase and response regulator hybrid protein [Leptospira
           interrogans serovar Lai str. 56601]
          Length = 1205

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 77/256 (30%), Positives = 141/256 (55%), Gaps = 8/256 (3%)

Query: 561 ISEWKQEKNKL-----SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
           I E K ++ +L         K  E    +KS+FLA +SHE+RTPL +++  S+ + + + 
Sbjct: 520 ILEMKNKEVELAKSDIEQKTKQLELSGKYKSEFLANMSHELRTPLNSLLILSKDLADNKR 579

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
             L     +E AN I +SG+ +L ++ND+LD+SKIESGKM+++ E V L +   E +S  
Sbjct: 580 KNLS-EDQVESANIIYKSGHDLLVLINDVLDLSKIESGKMSVNLERVVLRKFAKELMSTF 638

Query: 676 QLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
           +L A EK++ +   F +++P +   D   + QI  N++SNA+ FT  G ++ +     + 
Sbjct: 639 KLQATEKKLDLDLIFDDDLPEVIRTDSHRLNQILKNLISNALKFTERG-KVQVEIKKQNK 697

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
           ++++  V D+G+G+   +     + F Q   S   +  GTGLGL +++ +     G+ ++
Sbjct: 698 DKILFSVIDSGIGIPEEKHSAIFEAFQQADGSTSRKYGGTGLGLSISRELAKLLGGEIFL 757

Query: 795 FSTPAKGTLIEIIFPL 810
            S   +G+   +  P+
Sbjct: 758 KSKVNQGSTFSLSLPI 773


>gi|209966520|ref|YP_002299435.1| alkaline phosphatase synthesis sensor protein PhoR [Rhodospirillum
           centenum SW]
 gi|209959986|gb|ACJ00623.1| alkaline phosphatase synthesis sensor protein PhoR [Rhodospirillum
           centenum SW]
          Length = 504

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 78/446 (17%), Positives = 166/446 (37%), Gaps = 61/446 (13%)

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
            + + A   +P    N        +              K E  V    +++EA  + + 
Sbjct: 70  DQTARADDPVPAPLPNSAVAQTLLSATAQAQRRWLERLDKAERRVAVGEAVVEAMHEPLI 129

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ--- 523
           +I+ +  +   N A   LFG   + +  +   V L       +   + ++L     +   
Sbjct: 130 LIDPDRRVAQANAAARTLFG---DRMSGRDLAVSLR---NPAVLEAVGQVLRGGTSRSVE 183

Query: 524 -----TLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHA 574
                 +E++     K  +              +       LT+HDI+  K+ +      
Sbjct: 184 FALPLPVERVLEARVKPFRR-PAASPAGPADPGAGTEAAVLLTLHDITVLKRSE------ 236

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
                     ++DF+A  SHE+RTPL  ++GF E ++              +   +    
Sbjct: 237 --------QMRADFVANASHELRTPLATLLGFIETLRGPARD--DAEARDRFLGIMHDQA 286

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
             +  +VNDL+ +S+IE  +         + E V + +++++L A  ++I +R    + +
Sbjct: 287 GRMSRLVNDLMSLSRIELDEHTPPSGTADVAEIVRKVVAMLELRAAARKIRLRVDGPDRL 346

Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE------------------ 736
           P ++ D   + Q+  N++ NA+ +     ++ ++ + +                      
Sbjct: 347 PPVVGDEDQLAQVFQNLIDNALKYGREQTEVTVALSVSDQPASGGGGGVPGALSAVPVLP 406

Query: 737 --------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                   V + V D G G+    L +  + F ++  ++     GTGLGL + K +V+ +
Sbjct: 407 GRRRPTHLVAVAVIDRGDGIPRTHLPRLTERFYRVDPARSRALGGTGLGLAIVKHIVNRH 466

Query: 789 MGKFYIFSTPAKGTLIEIIFPLYDTS 814
            G+  I S   KG+   ++ P     
Sbjct: 467 RGRLAIDSEVGKGSTFTVLLPAATEE 492


>gi|261407834|ref|YP_003244075.1| multi-sensor hybrid histidine kinase [Paenibacillus sp. Y412MC10]
 gi|261284297|gb|ACX66268.1| multi-sensor hybrid histidine kinase [Paenibacillus sp. Y412MC10]
          Length = 893

 Score =  278 bits (711), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 79/254 (31%), Positives = 125/254 (49%), Gaps = 11/254 (4%)

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
             ++L    K  EK S +KS FLA +SHE+RTPL +++  S+++   + G L       Y
Sbjct: 479 AASELEKYAKELEKSSKYKSQFLANMSHELRTPLNSMLILSQILAENKQGNLTEEEQ-HY 537

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
           A  I  SG+ +L+++ND+LD+SK+E+GKM +  + V+L E            A  K +  
Sbjct: 538 ATVIHNSGSELLNLINDILDLSKVEAGKMQIEMDLVNLTELPELMEGYFSKSAESKNLEF 597

Query: 687 RTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQ---------IIISTTHTSNEE 736
               A+++P  + +D   + QI  N+LSNAI FT SG           I+ S    S + 
Sbjct: 598 DIEVADDLPDMMYSDGMRLHQILRNLLSNAIKFTESGSVKLKVKKMNSIVTSDFIISGDV 657

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           +   V DTG+G+    L+   + F Q   +   R  GTGLGL ++  +     G   + S
Sbjct: 658 IAFSVEDTGIGIAAEHLQPIFEAFQQGEETTARRFGGTGLGLSISLHLAKLLGGYITVES 717

Query: 797 TPAKGTLIEIIFPL 810
               G+   +  PL
Sbjct: 718 EEGIGSTFILYLPL 731


>gi|261314235|ref|ZP_05953432.1| multi-sensor hybrid histidine kinase [Brucella pinnipedialis
           M163/99/10]
 gi|261303261|gb|EEY06758.1| multi-sensor hybrid histidine kinase [Brucella pinnipedialis
           M163/99/10]
          Length = 857

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 99/626 (15%), Positives = 208/626 (33%), Gaps = 51/626 (8%)

Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271
           +G      + Y   +  +    +R  ++V +     +     L       L+++E     
Sbjct: 104 RGQIVYANQAYARMTGATDADGIRPLDQVLASEPAASDAIYRLTNAVRDGLSAQEEVRIS 163

Query: 272 QEDFHTINLNQY--TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE-----NLTPE 324
                  N +      +     L+  ++     ++ +         ++            
Sbjct: 164 GGLSRGANGSLAPVWYRIKARALEGGAEFKGPLVAWQVADISEERAEQERFFQELQEAIN 223

Query: 325 TVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
            +D  P  FF     G + Y N +               +  L+ ++    ++       
Sbjct: 224 HLDHAPAGFFSANPAGRIIYLNATLAEWLGVDLTQFTPGSLTLNDIVAGSGMA------L 277

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
           +   +++      +     +      SLA+ F    +  +         I  +  +   +
Sbjct: 278 IKAVKAEPGTSRNTVIDLDLIKRNGQSLAVRFYHRVQTARDGMPGTTRTIVLDRAEGDDS 337

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG--YPVEDILRKPFTVFL 501
                   ++      +    IA ++ EG  L TN     +F      + I R+     +
Sbjct: 338 SVAQRSAEVRFTRFFNSAPMAIAAVDAEGHTLRTNARFLDIFSGVVDRDAIDRRVKLENV 397

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF----SSCYSLT 557
                    +                 T+    EE+ +   +                ++
Sbjct: 398 VHERDRETFNKALAAAFAGQASISPVDTVLPGNEERHIRFYMSPVTDLGGEAAEEAAVIS 457

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
             + +E K  +N+++ ++K+              ++H+    LTAII  S+++       
Sbjct: 458 AVETTEQKALENQMAQSQKM-----QAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNHRA- 511

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
             +P + +  N I ++ N    +V  LL  S+    +  L  E + L + +++ + ++  
Sbjct: 512 -SDPSFPDIMN-IKQNANRAASLVRQLLAFSR----RQTLRPEVLDLTDVLAD-LRMLLA 564

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT------- 730
               K I ++     ++  + ADL   +Q+A+N+  NA    P GGQI + T        
Sbjct: 565 RLVGKDIELKIDHGRDLWPVKADLGQFEQVAVNLAVNARDAMPEGGQITLRTRNIPAADA 624

Query: 731 -------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
                      + V+  V DTG G+    LEK  +PF          G+GTGLGL +   
Sbjct: 625 AKLHYRDLPEADYVVFEVEDTGTGIPADVLEKIFEPFFTTK----EVGKGTGLGLSMVYG 680

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFP 809
           ++    G  Y  S   KGT  +I  P
Sbjct: 681 IIKQTGGFIYCDSEVGKGTTFKIFLP 706



 Score = 70.4 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/238 (11%), Positives = 66/238 (27%), Gaps = 7/238 (2%)

Query: 319 ENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
           ++L    +D  P    +    G + YAN ++  +T     D I     +  L   P  SD
Sbjct: 84  QDLAHSFMDTQPEGTVISDPRGQIVYANQAYARMTGATDADGIRPLDQV--LASEPAASD 141

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
                   +                 +    +   + +    +A +         +  + 
Sbjct: 142 AIYRLTNAVRDGLSAQEEVRISGGLSRGANGSLAPVWYRIKARALEGGAEFKGPLVAWQV 201

Query: 438 VDTRINKRKMEIEVMQLC-SI--LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
            D    + + E    +L  +I  L+    G    N  G I+  N  +++  G  +     
Sbjct: 202 ADISEERAEQERFFQELQEAINHLDHAPAGFFSANPAGRIIYLNATLAEWLGVDLTQFTP 261

Query: 495 KPFT-VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
              T   +   +   +   +           ++   +    +   +     ++     
Sbjct: 262 GSLTLNDIVAGSGMALIKAVKAEPGTSRNTVIDLDLIKRNGQSLAVRFYHRVQTARDG 319



 Score = 62.7 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 47/420 (11%), Positives = 103/420 (24%), Gaps = 38/420 (9%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD--ILHIDPNNHIGDLLKRQNTWYGKT 147
           D  G +   ++   +  G      I   L  V        D    + + ++   +   + 
Sbjct: 102 DPRGQIVYANQAYARMTGATDADGI-RPLDQVLASEPAASDAIYRLTNAVRDGLSAQEEV 160

Query: 148 TL-----WPIEGTNLYVPIDLAALPIYSRNREFSG-FRGFGIVHVNRVDNDPRALGKRLD 201
            +         G+   V   + A  +     EF G    + +  ++    +     + L 
Sbjct: 161 RISGGLSRGANGSLAPVWYRIKARALEGGA-EFKGPLVAWQVADISEERAEQERFFQELQ 219

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR------MKNKVSSLTEYYAHKDDVLK 255
           +  +HL     G  S       I+   +    L           ++           ++K
Sbjct: 220 EAINHLDHAPAGFFSANPAGRIIYLNATLAEWLGVDLTQFTPGSLTLNDIVAGSGMALIK 279

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN--NSKESFEYLSHRNHPSLSA 313
             K    TS  + +                     T ++          L        S 
Sbjct: 280 AVKAEPGTSRNTVIDLDLIKRNGQSLAVRFYHRVQTARDGMPGTTRTIVLDRAEGDDSSV 339

Query: 314 YFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLT-KYKSVDDIEIAGGLSTLLD 371
                E       +  P+    V + G+    N  FL +       D I+    L  +  
Sbjct: 340 AQRSAEVRFTRFFNSAPMAIAAVDAEGHTLRTNARFLDIFSGVVDRDAIDRRVKLENV-V 398

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
             +  +         +    +       L     N E  +     P              
Sbjct: 399 HERDRETFNKALAAAFAGQASISPVDTVL---PGNEERHIRFYMSPVTDLGGEAAEEAAV 455

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSI----------LEATSDGIAIINREGIILSTNRAV 481
               E  + +  + +M  +  ++ ++                 I + +    +L TN   
Sbjct: 456 ISAVETTEQKALENQM-AQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSD---LLLTNHRA 511



 Score = 48.9 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 45/134 (33%), Gaps = 12/134 (8%)

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY-LT 514
           S ++   +G  I +  G I+  N+A +++ G    D   +P    L     +    Y LT
Sbjct: 89  SFMDTQPEGTVISDPRGQIVYANQAYARMTGATDAD-GIRPLDQVLASEPAASDAIYRLT 147

Query: 515 EILSLDLRQTLEKITLG---STKEEKLLSLRIIIKKLPFSSC-------YSLTMHDISEW 564
             +   L    E    G         L  +   IK               +  + DISE 
Sbjct: 148 NAVRDGLSAQEEVRISGGLSRGANGSLAPVWYRIKARALEGGAEFKGPLVAWQVADISEE 207

Query: 565 KQEKNKLSHAKKIA 578
           + E+ +     + A
Sbjct: 208 RAEQERFFQELQEA 221


>gi|119468956|ref|ZP_01611981.1| hypothetical protein ATW7_04312 [Alteromonadales bacterium TW-7]
 gi|119447608|gb|EAW28875.1| hypothetical protein ATW7_04312 [Alteromonadales bacterium TW-7]
          Length = 886

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 78/243 (32%), Positives = 135/243 (55%), Gaps = 7/243 (2%)

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
             ++L  A   AE+ +  KS FLA +SHEIRTPLTAI+GF+E +       + N +   +
Sbjct: 391 MNSQLELAITQAEQANQLKSRFLANMSHEIRTPLTAIMGFTEQLL--HNDKIVNDKQ--H 446

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
            + I R+   +L+++N++LD+SKIE+ K+ +    V++ + V +  S++   A EKR+ +
Sbjct: 447 LSTILRNSKHLLELINNILDLSKIEAEKLAVEQASVNVVQLVHDIESIITPLAQEKRLEL 506

Query: 687 RTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-VILRVRDT 744
              F   IP+ I  D+  +KQI +N+ +NA+ FT  G  + I   + +    +   + DT
Sbjct: 507 NIIFDLPIPQTIYTDVTRLKQILINVANNAVKFTEQG-HVSICVHYHAKSNLIEFVITDT 565

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+GM+ +++ +  KPF Q   +   R  GTGLGL ++K + +   G   + S   +G+  
Sbjct: 566 GIGMSEHQISRVFKPFEQADATTTRRFGGTGLGLCISKNLANLLGGDIKLESEVGEGSEF 625

Query: 805 EII 807
            I 
Sbjct: 626 SIS 628


>gi|254507686|ref|ZP_05119818.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio
           parahaemolyticus 16]
 gi|219549383|gb|EED26376.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio
           parahaemolyticus 16]
          Length = 850

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 90/372 (24%), Positives = 164/372 (44%), Gaps = 27/372 (7%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
           +++  +  Q   +   +   I + + + G +L  N A  + F    +++ R+     L  
Sbjct: 349 KRLNEQEKQFADLFNFSLSPITLWSTDDGQLLRYNPAAERCF---KDEVSRERLVEALSH 405

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
           +                +  T+                   I     +        DI+ 
Sbjct: 406 HVKMCA----QGATLTGVNTTI--------GGITYRWNLSPIISDNATKQIMAQGQDITS 453

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
           + + + +   AK+ AE+ +  ++DFLA++SHE+RTPL  I+G S+++K+     L     
Sbjct: 454 FVEAEKQSQAAKEEAEESARVRADFLAKMSHELRTPLNGILGVSQLLKH----SLNEQEA 509

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
           +E+ + +  SG  +L ++ND+LD SKIE GK N+      L E  +    +      EK 
Sbjct: 510 LEHVDVLCNSGEHLLAVLNDILDFSKIEQGKFNIETNEFRLIELETTVEKIFMPLCVEKG 569

Query: 684 ILI--RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII---STTHTSNEEVI 738
           I +  R+   + +    +D   + QI  N++SNAI FT  G Q+ +   S       E+ 
Sbjct: 570 IELSMRSDIESQMWA-NSDQVRLNQILFNLVSNAIKFTHQG-QVCVELSSIETEQQFELE 627

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           + V+DTG+G+   +L+   +PF Q   +      G+GLGL +  ++V+   G   I S  
Sbjct: 628 IVVKDTGIGIEEPQLKTIFEPFIQAEATTTREYGGSGLGLAIVHSLVELMNGTISIDSVV 687

Query: 799 AKGTLIEIIFPL 810
            KGT +    P+
Sbjct: 688 GKGTTLVARIPM 699


>gi|254225188|ref|ZP_04918801.1| tmao reductase sytem sensor tors [Vibrio cholerae V51]
 gi|125622287|gb|EAZ50608.1| tmao reductase sytem sensor tors [Vibrio cholerae V51]
          Length = 1020

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 71/238 (29%), Positives = 117/238 (49%), Gaps = 8/238 (3%)

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
           ++ AE+ S  KS FLA +SHEIRTP+  ++G + ++++             Y   I+RSG
Sbjct: 496 RQQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLQDTTLTAT----QQHYVQVINRSG 551

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
             +L I+ND+LD SKIE+G + +H     L   V E   L+Q  A EK I +      ++
Sbjct: 552 RSLLAILNDVLDYSKIEAGHLEIHHTHFDLYRLVRETHELMQSRAREKGITLTYHIDEDV 611

Query: 695 PRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-VILRVRDTGVGMTNYE 752
            +    D   + Q+  N++ N I FT  G ++ I      + + +   V D+G+G+   E
Sbjct: 612 TQYWQGDEIRIGQVLNNLVGNGIKFTEQG-EVRIRIRLAPDGQGIRFAVEDSGIGIAEEE 670

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
                  F Q    +  +  GTGLGL +++ +V A  G+  + S   +G+      PL
Sbjct: 671 QATLFDAFTQADAGR-RKLGGTGLGLAISRKLVQAMGGELQLASQLGQGSCFWFTLPL 727


>gi|154249101|ref|YP_001409926.1| histidine kinase [Fervidobacterium nodosum Rt17-B1]
 gi|154153037|gb|ABS60269.1| histidine kinase [Fervidobacterium nodosum Rt17-B1]
          Length = 466

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 78/361 (21%), Positives = 155/361 (42%), Gaps = 39/361 (10%)

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
                SI+  ++DGI ++N    I  TN                        ++   ++ 
Sbjct: 141 REYFESIINLSNDGIVVLNELKEIEFTNSKAKDNL-----------------KDNTELLR 183

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570
             +  I + +    +E         +   S+ +    L       + + +I+  K+ +  
Sbjct: 184 EIIDRIENNEEFFEVETH-------KSFFSISVKQVNLLGEKKVLVNIRNITSEKEVQK- 235

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
                   ++    K++F+A +SHE+RTPL AI  + E + N    P+      E+ + +
Sbjct: 236 -------LKELDKIKTNFIANISHELRTPLAAIKAYVETMLNM---PMSQEEIHEFLDVV 285

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
                 + ++++DLLD S++ES  M +  E V++ E +  +I  ++  A EK + +  + 
Sbjct: 286 YSQSIRLEELLSDLLDFSQLESHTMKILKESVNICEIIEHSIETLENMAKEKDVTVEYNC 345

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVI-LRVRDTGVGM 748
           +N    I  D + ++Q+ +N+LSNAI F+    +   +        E++ + V D G+G+
Sbjct: 346 SN--LEIKCDRKRIEQVIVNLLSNAIKFSDQAKEKRFVRIDVLDEGEIVKIIVEDNGIGI 403

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
                +K  + F ++ N       GTGLGL + K +V+ + G   + S   K T   +  
Sbjct: 404 PESAFDKIFERFYRVDNELTYAVPGTGLGLAIVKEIVELHEGNILVESEVGKYTKFIVTL 463

Query: 809 P 809
           P
Sbjct: 464 P 464


>gi|39997026|ref|NP_952977.1| sensor histidine kinase/response regulator [Geobacter
           sulfurreducens PCA]
 gi|39983914|gb|AAR35304.1| sensor histidine kinase/response regulator [Geobacter
           sulfurreducens PCA]
          Length = 793

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 80/249 (32%), Positives = 124/249 (49%), Gaps = 9/249 (3%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E ++    LS AK+ A+  S  KS FLA VSHEIRTP+  ++G   ++           +
Sbjct: 264 ELERAVADLSKAKEAADSASQSKSRFLANVSHEIRTPMNGVLGMVSLLLETDL----QAK 319

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             EYA  I  SG L++ ++NDLLD S+IESGK+ +   P +    + E  ++    A +K
Sbjct: 320 QREYAEIIRSSGELLMQVINDLLDFSRIESGKLKMEQLPFAARRVIEEMATIYGERARQK 379

Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI--- 738
            + +  S A  +P  +L D   ++Q+  N+L NA+ FT  G  I ++   +    V    
Sbjct: 380 GVFLEYSMAGEVPDRLLGDRHRLRQVLGNLLDNAVKFTLKG-TITLTVRGSVEGGVCRLS 438

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
             V DTG+G+    L +   PF Q  +S   R  GTGLGL + + +V+   G     S P
Sbjct: 439 CIVSDTGIGIPQDMLPRLFHPFTQADDSNTRRFGGTGLGLAIVRHLVELMGGTVSCDSEP 498

Query: 799 AKGTLIEII 807
             G++    
Sbjct: 499 GCGSVFRFT 507


>gi|186681707|ref|YP_001864903.1| integral membrane sensor signal transduction histidine kinase
           [Nostoc punctiforme PCC 73102]
 gi|186464159|gb|ACC79960.1| integral membrane sensor signal transduction histidine kinase
           [Nostoc punctiforme PCC 73102]
          Length = 709

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 81/258 (31%), Positives = 137/258 (53%), Gaps = 7/258 (2%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           +   K    +L  A K A+  +  KS FLA  SHE+R PL  II    V+++        
Sbjct: 361 VERLKAGAEELEIAWKEAKNANQIKSQFLATTSHELRNPLHTIINCIRVVEDGLCD--SR 418

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
              +E+    + +   +L+I+NDLLDISKIE+GK+++   P+ L + + E I+L  +   
Sbjct: 419 EEEMEFLKRANETTIHLLNIINDLLDISKIEAGKLSVVITPLDLRQILLEVINLQSVNVQ 478

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EV 737
           +K + ++         I AD   +KQ+ +N++ NA  FT +G  I I+T   S+    +V
Sbjct: 479 QKGLQLKCELDPQPIPIKADAAKLKQVLINVIGNATKFTDTGS-ITIATEIQSSNGKSQV 537

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
           ++ V DTG+G+   +  K  +PF  +  +   + EGTGLGL +++ +++   G   + ST
Sbjct: 538 VVIVTDTGIGIDPNQQHKLFRPFVMVNGTTTRQFEGTGLGLAISRNLIELMGGSITLEST 597

Query: 798 -PAKGTLIEIIFPLYDTS 814
              +GT ++I  PL D S
Sbjct: 598 GLHQGTTLKITLPLIDVS 615


>gi|309791212|ref|ZP_07685744.1| histidine kinase [Oscillochloris trichoides DG6]
 gi|308226774|gb|EFO80470.1| histidine kinase [Oscillochloris trichoides DG6]
          Length = 545

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 104/504 (20%), Positives = 195/504 (38%), Gaps = 35/504 (6%)

Query: 320 NLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
                 +++  +    Y    L Y+NP     ++ K  D                 SD  
Sbjct: 53  ARMSSVINRYQVGQLEY----LIYSNPYDKDRSRQKMGDLEAEMQRYFADYQPLITSDEE 108

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
             +   +  + +  + A+           N+ ++          + +          +  
Sbjct: 109 RNRFEAVLLAWQRVVTANYERFIPAVALANTGSVQPFYSRMNPLYGDLSVAMDALSVEGQ 168

Query: 440 TRINKRKMEIEVMQLCS-----------ILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
            +      E+    L +           IL +   G+ +    G I        ++    
Sbjct: 169 AQATSALEEVRAAYLSAQTVIIGDTGLTILISAVIGLVL---SGRI------AMRIGRLT 219

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
                       +           ++      L Q+  ++ +   ++  +L  R      
Sbjct: 220 SATAQ-------VAAGDLDRQVEVVSRDELGTLAQSFNQMVMSLREQRGILEQRNTELHT 272

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                  LT  D+   KQ + +   A+  AE  S  KS FLA +SHE+RTPL AI+G+++
Sbjct: 273 SLMRQEQLTA-DLVRGKQAEEEAQRAQAAAEAASQAKSMFLANMSHELRTPLNAILGYAQ 331

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
            +              E+ + I  +G  +  +++++LD SKIE GK+ L+  PV ++  +
Sbjct: 332 -LLKMGVANNDPVSQQEFLDSILGAGRHLTSLISNVLDFSKIEQGKIELYMGPVDVEPLI 390

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
            E   +V     ++   +R S    I  +L D   ++QI +N+LSNA  FT +G  I + 
Sbjct: 391 REVADIVHPLVKQQHNELRISIEPEIGTMLTDGPKLRQILVNLLSNAAKFTEAG-TISLH 449

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
               + E +   V DTG+G++   L K  +PF Q+ +S   R +GTGLGL L++ +  A 
Sbjct: 450 V-CAAAEMIEFAVIDTGIGISAEHLGKLFQPFSQVDSSVTRRVDGTGLGLALSRQLCHAM 508

Query: 789 MGKFYIFSTPAKGTLIEIIFPLYD 812
            G+  + S   +G+   ++ P  D
Sbjct: 509 GGEISVESAVGQGSTFRVVLPAGD 532


>gi|298491856|ref|YP_003722033.1| integral membrane sensor signal transduction histidine kinase
           ['Nostoc azollae' 0708]
 gi|298233774|gb|ADI64910.1| integral membrane sensor signal transduction histidine kinase
           ['Nostoc azollae' 0708]
          Length = 684

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 83/258 (32%), Positives = 139/258 (53%), Gaps = 7/258 (2%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           +   K    +L  A K A+  +  KS FLA  SHE+R PL  II    ++++        
Sbjct: 361 VERLKAWAEELEIAWKEAKSANFVKSQFLATTSHELRNPLNIIINCVRLVRDGLCD--DR 418

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
              +E+    D +   +L I+NDLLDISKIE+GK+++   P+ L + + + I+L  +   
Sbjct: 419 EEELEFLQRADETAIHLLGIINDLLDISKIEAGKISVITTPLELRKLLLDVINLQSVNVQ 478

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EV 737
           +K + ++ +  N +  + AD   +KQ+ +NI+ N+  FT  G  I+IST    N     V
Sbjct: 479 QKGLQLKCAIGNELIPVRADELKLKQVLINIIGNSTKFTDKGS-IVISTDIHHNNSSSHV 537

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS- 796
           I+ V+DTG+G+   + +K  +PF  +  +   + EGTGLGL +++ +++   GK  + S 
Sbjct: 538 IISVKDTGIGIDPGQQDKLFRPFVMVDGTTTRKFEGTGLGLAISRNLIELMGGKITLESL 597

Query: 797 TPAKGTLIEIIFPLYDTS 814
               GT ++II PL D S
Sbjct: 598 GLHHGTTVKIILPLIDIS 615


>gi|269103310|ref|ZP_06156007.1| phosphate regulon sensor protein phoR [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268163208|gb|EEZ41704.1| phosphate regulon sensor protein phoR [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 436

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 68/364 (18%), Positives = 139/364 (38%), Gaps = 29/364 (7%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           ++   + +  +  E+  D + +   EG I+  N+    L G+   D   +P    L    
Sbjct: 92  ELATLIRRFRNGAESLPDAVVVFRSEGNIVWCNKLAQNLLGFRWPDDAGQPINNLLRSPD 151

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
                 +      +++   +              +L + I +      Y + + D+S+ K
Sbjct: 152 FGRYLAHQQFEHPIEITSPMNYDR----------TLELRIVRYTEGE-YLMVVRDVSQLK 200

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           Q +                + +F A VSHE+RTP+T + G+ E+  +     L  P +  
Sbjct: 201 QLEG--------------MRRNFFANVSHELRTPMTVLQGYLEM--SSDPDMLVGPMWTR 244

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
               +    + +  +V  LL +SKIE+       E V + + +       Q  + +K   
Sbjct: 245 AHGVMTEQLSRMNALVEQLLTLSKIEAAPTIDLEEVVDVPKMLDLLEKEAQSLSGDKNQQ 304

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           I      ++ ++  D   ++    N++ NA+  TP    I +   +T      L V D+G
Sbjct: 305 IHFEIDRSL-KVHGDEDQLRSAISNLVYNAVKHTPENAAITVRWYNTKTG-AKLEVTDSG 362

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
            G+    + +  + F ++  ++     G+GLGL + K  +  +     I S    G+   
Sbjct: 363 EGIAPQHIHRLTERFYRVDKARSRETGGSGLGLAIVKHALSHHDTHLDIASEVGVGSTFS 422

Query: 806 IIFP 809
            + P
Sbjct: 423 FVLP 426


>gi|311746257|ref|ZP_07720042.1| sensor histidine kinase/response regulator [Algoriphagus sp. PR1]
 gi|126576490|gb|EAZ80768.1| sensor histidine kinase/response regulator [Algoriphagus sp. PR1]
          Length = 845

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 86/316 (27%), Positives = 139/316 (43%), Gaps = 14/316 (4%)

Query: 506 PSVMNHYLTEILSLDLRQTLEKI------TLGSTKEEKLLSLRIIIKKLPFSSCYS-LTM 558
            S +   + ++L    R+ LE          G   +     + ++   +  S+      +
Sbjct: 265 QSEIIGTIQQLLRTLQRRVLEDSDSQNVAAYGLANDVIFFLVLVVAFAVLGSAILVYSIL 324

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            +I   +  +  L  +++ AE+ +  K +FLA +SHEIR PL  I G+  V++       
Sbjct: 325 KEIRLNRSYQENLLLSQQKAEQLAKSKQEFLANMSHEIRNPLHVIQGYQSVLEKSHLDTA 384

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
                  Y   I  +   +++IV+D+LD SK+E+GK+ L F P           +  +L 
Sbjct: 385 ----QQSYLRMIGFASQTLMEIVDDVLDFSKLEAGKLKLEFTPFDPVNLFGSLQNFFELQ 440

Query: 679 ANEKRILIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737
           A+EK +    S        +L D   +KQI  N+LSNA  FT  G  I +         +
Sbjct: 441 ADEKNLGFHWSVDLPEDKWLLGDQLRLKQILNNLLSNAFKFTEEGS-INVGVKWVE-GIL 498

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
            + ++DTG+GM+   LEK    F Q  NS   +  GTGLGL +   +V    G+    S 
Sbjct: 499 TVEIKDTGIGMSEEVLEKVFLEFDQADNSISRKFGGTGLGLAIVHRLVHLMHGEINTSSK 558

Query: 798 PAKGTLIEIIFPLYDT 813
              GT I I  P+  T
Sbjct: 559 VGVGTCISISLPMETT 574


>gi|117618531|ref|YP_854948.1| hybrid sensory kinase [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
 gi|117559938|gb|ABK36886.1| hybrid sensory kinase [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 888

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 79/243 (32%), Positives = 129/243 (53%), Gaps = 8/243 (3%)

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
            +L  A ++AE  +  KSDFLA +SHEIRTP+ AI+G S +    R     +P+  +Y +
Sbjct: 142 QELEVAYELAEGATRAKSDFLANMSHEIRTPMNAILGMSHLALQTRL----DPQQFDYVS 197

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I RS   +L I+ND+LD SKIE+GK++L      LD  +    +LV   A  K I +  
Sbjct: 198 KIQRSAQHLLGIINDILDFSKIEAGKLDLERIEFDLDHVLENLATLVGEKAEAKGIELLF 257

Query: 689 SFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVIL--RVRDT 744
              + +  +   D   + QI +N  +NA+ FT  G   + +S      +EV+L   V+DT
Sbjct: 258 EVDHQLDTLLYGDPLRLGQILINYANNAVKFTEQGEILVKVSCLEKQPQEVLLHCSVQDT 317

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+GM+  + ++  + F Q  +S   +  GTGLGL +++ + +   G+  + S P +G+  
Sbjct: 318 GIGMSQEQQQRLFQSFQQADSSTTRKYGGTGLGLAISRKLAELMGGEVGVQSEPGRGSTF 377

Query: 805 EII 807
              
Sbjct: 378 WFT 380


>gi|119716165|ref|YP_923130.1| ATPase domain-containing protein [Nocardioides sp. JS614]
 gi|119536826|gb|ABL81443.1| ATP-binding region, ATPase domain protein [Nocardioides sp. JS614]
          Length = 535

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 71/387 (18%), Positives = 149/387 (38%), Gaps = 19/387 (4%)

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
                I       R     +E +     +I +    G+ +++  G     NR  +     
Sbjct: 162 WAALAISYALERVRAGIEVIEHQRRVSQAIFDTVDVGLVLLDESGAYQGINRRHADFIRL 221

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
              +  +                    E +        E+             +RI +  
Sbjct: 222 AFPEGHQGRAGQLGAVYDADGTRELAAEEMPTHRASLGEQ----------FEDVRIWVGP 271

Query: 548 LPFSSCYSLT----MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
            P +          + D +      +          +    K +F+A VSHE+RTPLT+I
Sbjct: 272 DPLTRRALSVSARRVEDEAGALAGASLAYKDVTDFMRALRVKDEFVASVSHELRTPLTSI 331

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +G+++++  +   P      +     + R+   +  +V DLL  ++++ G   L   PV 
Sbjct: 332 VGYTQMLLERDDLPAD---VVAQLEVMARNSGRLHRLVADLLHTARLDEGGAPLVRAPVD 388

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
           L   V + +      A    + +       +  + AD   + Q+  N++SNA+ +T +GG
Sbjct: 389 LAAVVRDCVEAAAPAARRSGVELVLELPPTL-VLRADQERLAQVVDNLVSNAVKYTSAGG 447

Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
            + ++      +   L V DTG+G+   + ++    F +   +++   +G GLGL + KA
Sbjct: 448 CVQVTLLL-DGDRAELCVADTGIGIAAADRDRLFTRFFRARQAEERSIQGVGLGLSITKA 506

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFPL 810
           +V+++ G+  + S   +G++  +  PL
Sbjct: 507 IVESHGGRIEVESELGRGSVFRVRLPL 533


>gi|254442552|ref|ZP_05056028.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198256860|gb|EDY81168.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 931

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 89/387 (22%), Positives = 165/387 (42%), Gaps = 34/387 (8%)

Query: 451 VMQLCSILEAT-SDGIAIINR------EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
             QL S LE      + ++ R      +   +S   ++  LF      +  +     + +
Sbjct: 133 SEQLESSLETMEGAAMQVLRRQEASIRDMKWISACGSLLSLFALCFFYL--RTIRETIRR 190

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR---IIIKKLPFSSCYSLTMH- 559
            +  +M      +LS    + ++       K+  ++ L      + K        +    
Sbjct: 191 LSVPIM------LLSRAADRAVKGARRIRMKDTNVVELHSLGASLSKFANDMHELVDERT 244

Query: 560 -DISEW-KQEKNKLSHAK---KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
            +I++  K  + ++  A+   + A++    KS+FLA +SHEIRTP+  I+G + V++   
Sbjct: 245 IEITKVNKALEAEIDRAEAFARRAKEAEEAKSNFLANMSHEIRTPMNGIVGMNTVLRETP 304

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                N     Y   +      ++ ++ND+LD SKIE+GK+ +      L E + E  SL
Sbjct: 305 L----NDMQRRYLETMANCSESLMVLINDILDFSKIEAGKLEVENSAFDLIEVLEEVSSL 360

Query: 675 VQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
             + A++K I +       +   +  D   +KQ+  N+++NAI FT  G +I I      
Sbjct: 361 FGMTASQKGIDLICLQDGRMSEPVFGDPHRLKQVLSNLVNNAIKFTEEG-EIEIGLRIDE 419

Query: 734 NEEV----ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
              +     + ++DTG+G+     ++  K F Q   S   +  GTGLGL +++ +V+   
Sbjct: 420 GGPLDSVANIWIQDTGIGIPESVQKRLFKAFSQADESTSRKFGGTGLGLVISQRLVELMG 479

Query: 790 GKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           G   I S    G+   I  PL     P
Sbjct: 480 GTIGIESESGVGSKFWIQIPLSRAEGP 506


>gi|192361677|ref|YP_001982922.1| putative sensor/response hybrid [Cellvibrio japonicus Ueda107]
 gi|190687842|gb|ACE85520.1| probable sensor/response hybrid [Cellvibrio japonicus Ueda107]
          Length = 916

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 83/308 (26%), Positives = 133/308 (43%), Gaps = 13/308 (4%)

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII----IKKLPFSSCYSLTMHDISEWK 565
              L E +    +   +        ++++  L I     + +L          HD  E +
Sbjct: 177 LSELAEQIGSGNQGNYQLRARSLDGDDEVAHLTIRFNAMLDRLQSQDQQLREQHDELELR 236

Query: 566 QEKNKLSHAKKIA--EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            E+      +  A  E  S  KS FLA +SHEIRTPL  I+G + ++      P    + 
Sbjct: 237 VEERTAQWRQATASAEAASQAKSQFLAVMSHEIRTPLNGILGMTNLLLETELTP----KQ 292

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
             +A    RSG  +L I+ND+LD SK+E+GK+ L   P  L+  V +        A+ K 
Sbjct: 293 KRFARVARRSGEDLLLIINDILDFSKVEAGKLELEIHPFQLNLLVEDLAERYAPIAHAKG 352

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNE--EVILR 740
           + +  +          D   + Q+  N+LSNAI FT  G   + +      +    +   
Sbjct: 353 LELLCNTPLPPLSAEGDAARLAQVLTNLLSNAIKFTERGEVTLEVKLLLREDNLLHLHFG 412

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           VRDTG+G+   + E+    F Q  +S   R  GTGLGL +++ +V+   G   + S P K
Sbjct: 413 VRDTGIGIRVEQAERLFNAFTQADSSMTRRYGGTGLGLAISQCLVELMGGHIALESEPGK 472

Query: 801 GTLIEIIF 808
           G+      
Sbjct: 473 GSYFYFEL 480


>gi|186475653|ref|YP_001857123.1| multi-sensor signal transduction histidine kinase [Burkholderia
           phymatum STM815]
 gi|184192112|gb|ACC70077.1| multi-sensor signal transduction histidine kinase [Burkholderia
           phymatum STM815]
          Length = 437

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 75/409 (18%), Positives = 161/409 (39%), Gaps = 35/409 (8%)

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK-----RKMEIEVMQLCSILEATSDGI 465
                +      + P      G     +     +     R++E +  +    ++A+ +G+
Sbjct: 52  RLWRLLDAPVYGEVPSAPGIWGEIYYRLHKLAKRWHAQVRQVEQQHSRFIQAIQASPNGV 111

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
           A+++    I   N      FG   +  LR+  T  +          ++  + S    Q L
Sbjct: 112 AMLDDHDQIEWCNAISEAHFGLDAKRDLRQHITHLVRHP------DFVRYLNSHHYEQML 165

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
               +    +++   L + +      +   +   DI+E ++                + +
Sbjct: 166 ---IMRGMGDKRQNVLSVQVFPY-GENRKLVLSQDITELERT--------------DAMR 207

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
            DF+A VSHE++TPLT + GF E ++     PL     + Y + + +    +  IV+DLL
Sbjct: 208 RDFVANVSHELKTPLTVLSGFLETMRE---IPLDESERVRYLDLMMQQAQRMQHIVSDLL 264

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
            ++ +E        + V +   +       Q  +  +   I       +  +      + 
Sbjct: 265 VLATLEGDNKPPSNQMVDMRAVLRHLEDDAQSLSGGRH-RIGFEADEAL-TVTGVETEIM 322

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
               N+++NAI +TP GG I +S  H    +    V D+G+G+   ++ +  + F ++  
Sbjct: 323 SAFGNLVTNAIRYTPDGGSIDVSW-HAQGGQATFAVTDSGLGIPAADIPRLTERFYRVDR 381

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           S+     GTGLGL + K ++  +  +  + S   +G+   + FP+  ++
Sbjct: 382 SRSRDTGGTGLGLAIVKHVLQRHDAQLEVKSEEGRGSTFTVRFPVARSA 430


>gi|219847546|ref|YP_002461979.1| GAF sensor signal transduction histidine kinase [Chloroflexus
            aggregans DSM 9485]
 gi|219541805|gb|ACL23543.1| GAF sensor signal transduction histidine kinase [Chloroflexus
            aggregans DSM 9485]
          Length = 1174

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 106/612 (17%), Positives = 207/612 (33%), Gaps = 51/612 (8%)

Query: 233  HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL 292
                + ++  +     +  DVL         +  + L                 Q     
Sbjct: 580  VRSSEPQLPDVGAAQWNDGDVLLVLLRAANRAVRAILLLDHPVKGQR-PDVADLQALTVY 638

Query: 293  QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF----VYSHGNLFYANPSF 348
             + +  + +    RN    S       N     ++   +P      + + G +   +  +
Sbjct: 639  ASIAGTAIDMALLRNRQQQSLARLTALNSLGMVINTQSLPELQVLELTARGMIELVDALW 698

Query: 349  LLLTKYK-SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
              +       DD+ +   + T    P +    A + ++  R         A         
Sbjct: 699  AQIVLLDHRSDDLRLERSIGTASLGPDVVQTLARRALVNRRPAFRSATTVAVPLRGTQRM 758

Query: 408  ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
              ++ +       +      M         V+       +      L  ++ A  DG+ +
Sbjct: 759  IGAIVIGGEQALDSADVEILMLYATQAAVAVENMRLLEDVRRGRDHLAQVMAAVHDGLIL 818

Query: 468  INREGIILSTNRAVSKL-----FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522
            I   G I+  N A+ +L     +  P+ ++  + FT  L +          T  L     
Sbjct: 819  IAAHGTIVIANEALYRLAHTAEWSPPLTNMNGELFTDLLNRWADQRNLDPETVALLQRSF 878

Query: 523  QTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEK 580
               +       ++            L       + LT+ D++  K+ +            
Sbjct: 879  TVADAHGELIGQDGVFAWTVTQAGDLVQDRVQTFLLTIRDVTAAKEAE------------ 926

Query: 581  ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
                + D    + H++R PLT I    E + ++  G L   R  +       S   +L++
Sbjct: 927  --QLRDDLAHMLIHDLRQPLTTITLAFERLIHE-LGDLFTERQQQAVQIGQNSTKRLLNL 983

Query: 641  VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILAD 700
            VN +LDI +IESG+M L  EP  +++ +   I+ + + A  K + + +     +  + AD
Sbjct: 984  VNTMLDIGRIESGQMPLEREPFPIEQVIESVINPISIQAQLKGVQVVSRIDPAVRMLFAD 1043

Query: 701  LRSVKQIALNILSNAIHFTPSGGQIIISTTHTS--------------------NEEVILR 740
               + ++  N+L NA+ F+P GG I I                          +    + 
Sbjct: 1044 REIISRVLQNLLDNALKFSPEGGVITIEVGLKPTTGQPQRLTLSDELTVIVPGDRMAHVS 1103

Query: 741  VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
            V D G G+   + ++    F Q   S + RG+G+GLGL   K  V A+ G  ++ STP  
Sbjct: 1104 VHDQGPGIPLEDQQRIFDRFRQ---SGRHRGKGSGLGLTFCKLAVAAHQGTIWVDSTPDH 1160

Query: 801  GTLIEIIFPLYD 812
            G+      PL +
Sbjct: 1161 GSTFHFTLPLAE 1172


>gi|183219520|ref|YP_001837516.1| putative sensor protein [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|167777942|gb|ABZ96240.1| Putative sensor protein [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
          Length = 539

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 108/534 (20%), Positives = 203/534 (38%), Gaps = 50/534 (9%)

Query: 310 SLSAYFDEGENLTPETVDKCPIPFF--VYSHGNLF-YANPSFLLLTKYKSVDDIEIAGGL 366
             +   +E        +   P  F+  +   G +  Y    F+ +   +  + +      
Sbjct: 15  PSAFPHEEVLRELENLLRSNPD-FWLKINRDGIIVDYKTSRFVNI--GEKPEHLLGKHIN 71

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
             L   P L D  +     L                                E       
Sbjct: 72  EGL--PPYLRDITSEALEYLTDKKSLVFWKEYSYGVAP---------NIRHVEVRFVVLY 120

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
           +        +  + +  +        +  S+ +  +D I IIN EGII   N+     FG
Sbjct: 121 DGFIMSNHRDITERKRLENAFLESESRFLSMAQNAADSIIIINDEGIIQFFNKTAEDTFG 180

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRII 544
           Y  ED++ K  T+ +        + +L      +    +   +         ++    + 
Sbjct: 181 YKQEDVIGKNVTMIIPPEYKGKHDTFLKRYKDTEENHIIGVGREVFAQRMSGEVFPCELS 240

Query: 545 IKKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKI------------------AEKESSH 584
           + +    +   ++  + DIS+ K ++ +L   +                    AE+ S  
Sbjct: 241 VGEFKTKTGKMFTGILRDISQRKLQEEELYQYRNHLEDLVESQTMDLKMSKNIAEEASYM 300

Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
           KS FLA +SHE++TP+ AI+ ++E +  ++   +   +  EY   ID SG  +L ++ +L
Sbjct: 301 KSLFLANISHELKTPIHAILSYAE-LGAEKSASVSPEKIKEYFQIIDSSGKRLLSLLENL 359

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704
           LDI+K+ESGKM   FE   L E     I+ ++    ++ I +             D   +
Sbjct: 360 LDIAKLESGKMRYLFEKNCLKETTKFVINEMRAILEKRGITVVLLDKEERWEAEFDYERI 419

Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTS------NEEVI---LRVRDTGVGMTNYELEK 755
           +Q+  NI+SNA+ F P+   I IS              V    +++RD G G+   +L+K
Sbjct: 420 QQVIRNIISNALKFIPNDTNIEISLIKREFIPRKSQSYVKGIGIQIRDFGPGIPAEDLDK 479

Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             + F Q    +    +GTGLGL +++ +V+ + G  Y  +   KG +  ++ P
Sbjct: 480 IFEKFIQSKQVKAG-TKGTGLGLSISREIVNDHNGLLYAENHEEKGAVFTMLIP 532


>gi|186475757|ref|YP_001857227.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia phymatum
           STM815]
 gi|184192216|gb|ACC70181.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia phymatum
           STM815]
          Length = 663

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 98/521 (18%), Positives = 183/521 (35%), Gaps = 42/521 (8%)

Query: 331 IPFFVYSHGNLFYAN----PSFLLLTKYKSVDDIEIAGGLST--LLDAPKLSDNNAIKPV 384
           +       G L  A      +   +    SV+    +   S   L+      D       
Sbjct: 13  VLVVDDDEGILRLARKSLERAGCRVELSSSVEAAHRSIVASPPDLIVLDYQLDGAETGLD 72

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
              R     +   A L T   +      +  +    ++  P+        PE V+  +++
Sbjct: 73  FFRRLRGEGVRIPAILVTGFTDESR--VIEALRAGVSDVVPKAGDYLDYLPEAVERVLSQ 130

Query: 445 RKMEIE----------VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
            +++ E                + EA    +   +  G     ++   +  G    + L 
Sbjct: 131 MRLQRESAEALWLREREAHYRMLSEALPHLVFTCSANGDCDFVSKQWIEYTGLDGSNALG 190

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC- 553
             +   +  +               D             ++       + I  +  +   
Sbjct: 191 LAWLDAVHPDEREDTRRSWLRTARGDG-SDFRSEIRIRRRDGMYRWFDVRIAAVRDAGGV 249

Query: 554 ---YSLTMHDI-------SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
              +     DI        E ++       A++ AE+ +  K  FLA +SHE+RTPLT +
Sbjct: 250 ISKWLGNCTDIQSQREAIEERERLLASEQAARQAAEEANRAKDRFLAMLSHELRTPLTPV 309

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +  + +++     P            I R+  L   +++DLLD++++ +GK+ L  E V 
Sbjct: 310 LAGARMLE---IMPDLPEPVRAGVVMIRRNVELEARLIDDLLDLTRVANGKLRLSLETVD 366

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
           + E +   + L +     K+  +          +LAD   ++Q+  N++ NA  FTP GG
Sbjct: 367 VHEVIGSVLELFRSEIQTKQQDVHVDTRAQHHFVLADRARLQQMLWNLIRNAAKFTPDGG 426

Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
            I + T       V + + DTGVG+   ++ K    F Q   +   +  G GLGL + KA
Sbjct: 427 HIYVRTR-DERMHVQISIEDTGVGIEPEQIGKLFNAFEQGSQNMSRQFGGLGLGLAITKA 485

Query: 784 MVDANMGKFYIFSTPAK--GTLIEIIF-----PLYDTSHPH 817
           + DA+ G     S P    G    I       PL + + P 
Sbjct: 486 LTDAHGGTVTAQS-PGAHCGATFTITLPTAEEPLAERAAPE 525



 Score = 46.6 bits (109), Expect = 0.018,   Method: Composition-based stats.
 Identities = 17/246 (6%), Positives = 60/246 (24%), Gaps = 8/246 (3%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN--T 142
             +   A+G    +S++  +  G      +G+   D       +          R +   
Sbjct: 160 LVFTCSANGDCDFVSKQWIEYTGLDGSNALGLAWLDAVHPDEREDTRRSWLRTARGDGSD 219

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP-RALGKRLD 201
           +  +  +   +G  +Y   D+    +       S  +  G     +   +      + L 
Sbjct: 220 FRSEIRIRRRDG--MYRWFDVRIAAVRDAGGVIS--KWLGNCTDIQSQREAIEERERLLA 275

Query: 202 KKFSHLHEIKKGHSSVEKE-KYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
            + +     ++ + + ++         ++P   +    ++  +                 
Sbjct: 276 SEQAARQAAEEANRAKDRFLAMLSHELRTPLTPVLAGARMLEIMPDLPEPVRAGVVMIRR 335

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
            +  E   + +  D   +   +         +        E               +   
Sbjct: 336 NVELEARLIDDLLDLTRVANGKLRLSLETVDVHEVIGSVLELFRSEIQTKQQDVHVDTRA 395

Query: 321 LTPETV 326
                +
Sbjct: 396 QHHFVL 401


>gi|78358078|ref|YP_389527.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78220483|gb|ABB39832.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 769

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 98/670 (14%), Positives = 217/670 (32%), Gaps = 79/670 (11%)

Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD 251
            P A  +  ++       + +G    ++    + +  +    L + +      + ++   
Sbjct: 124 APCAPRREDERYRIVYDTMAQGVVFQDRTGSIVCANAAAERLLGLGSDAMRGMDSHSGSW 183

Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL-------- 303
             +  +  PL  S   S+        ++      +      Q     S   L        
Sbjct: 184 QAVDVDGSPLPGSAHPSMVALRTGRPVSGRVMGIRHQTTGAQRWLVVSATPLFTGGGSVP 243

Query: 304 --------SHRNHPSLSAYFDEGENLTPETVDKCPIPFFV--YSHGNLFY--ANPSFLLL 351
                         +             + +D+ P+  F+  Y  G   +   NP+   +
Sbjct: 244 AEVFSTFEDITELAAARRELALYSERLQQVIDRSPLGVFLWQYQDGRFTFLHGNPASEAM 303

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411
                 +           L       + A+ P       RT I   +       +     
Sbjct: 304 LGITVAEYAGQE------LLEMLPELDPAVVPAEYANVMRTGIPWHSEQLDYADD----- 352

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471
            +    FE       +     +  +    +  + ++      L  +++     +  ++  
Sbjct: 353 -VISGAFEVHAFRAGSEVLCVMFQDITQRKRTEAELATVTSLLQELIDVMPSVLVAVDTA 411

Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
           G +   N A   L G        +          P+ + + L  +        LE     
Sbjct: 412 GRVTRWNHAAESLTGISAAQAAGRELDGLFAW--PAFVRNLLGSVQDGPECAHLEDAAWE 469

Query: 532 STKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
                +   + +   K      Y+L + D++   + +  +  ++K+            A 
Sbjct: 470 HDGVVRHWDVTMYPLKEGGGGGYALRLDDVTSRVRLREMMIQSEKMLSVAG-----LAAG 524

Query: 592 VSHEIRTPLTAIIGFSEVIKNQR----------FGPLGNPRYI-----------EYANYI 630
           ++HEI  PL AI   ++    +            G LG   Y             +   I
Sbjct: 525 MAHEINNPLGAIAQAAQNCLRRMGTGLPANLHTAGELGLDLYAMQTYLDRRGIYAFMEDI 584

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL------VQLYANEKRI 684
             S +    IV+++L  S+ E    +       + + + +A+ L      ++   + KR+
Sbjct: 585 RHSCSRAARIVSNMLAFSRTEKSPRSCA----DIHDVIRQAVVLAETDYDMKRKYDIKRV 640

Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSN---AI--HFTPSGGQIIISTTHTSNEEVIL 739
            +R  FA N+P++   ++ ++Q+ LN++ N   A+      +  ++++ T+      V +
Sbjct: 641 RVRYDFAENVPQVWCSVQDLQQVFLNLVRNSSQALSEQAGHAAPELLLRTSLQPEGRVEI 700

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
           RV D G GM+     +  +PF          GEGTGLGL ++  ++  + G  ++ S P 
Sbjct: 701 RVCDNGPGMSEEAARRCFEPFYTTKP----VGEGTGLGLYVSYLIIKQHQGTIHLNSGPQ 756

Query: 800 KGTLIEIIFP 809
           +G    I  P
Sbjct: 757 RGAEFVISLP 766



 Score = 46.2 bits (108), Expect = 0.026,   Method: Composition-based stats.
 Identities = 22/293 (7%), Positives = 63/293 (21%), Gaps = 22/293 (7%)

Query: 85  FTWNIDAHGYLK--EISEELPKTIGNYAFKMIGMRLCDVSDILHID-PNNHIGDLLKRQN 141
           F W     G       +      +G    +  G  L ++   L          ++++   
Sbjct: 282 FLWQY-QDGRFTFLHGNPASEAMLGITVAEYAGQELLEMLPELDPAVVPAEYANVMRTGI 340

Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
            W+ +   +  +  +    +       +    E        +           A    + 
Sbjct: 341 PWHSEQLDYADDVISGAFEVHA-----FRAGSEVL----CVMFQDITQRKRTEAELATVT 391

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLKTEK 258
                L ++             +            +          +        ++   
Sbjct: 392 SLLQELIDVMPSVLVAVDTAGRVTRWNHAAESLTGISAAQAAGRELDGLFAWPAFVRNLL 451

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE-SFEYLSHRNHPSLSAYFDE 317
             +    E +  E   +    + ++     +   +      +       +   L     +
Sbjct: 452 GSVQDGPECAHLEDAAWEHDGVVRHWDVTMYPLKEGGGGGYALRLDDVTSRVRLREMMIQ 511

Query: 318 GENLTPETVDKCPIPFFVY---SHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
            E +    V               G +  A  + L         ++  AG L 
Sbjct: 512 SEKMLS--VAGLAAGMAHEINNPLGAIAQAAQNCLRRMGTGLPANLHTAGELG 562


>gi|6273355|gb|AAF06332.1|AF192795_1 two component histidine sensor kinase GacS [Pseudomonas
           chlororaphis]
 gi|88604817|gb|ABD46754.1| two-component histidine kinase [Pseudomonas chlororaphis]
          Length = 917

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 78/243 (32%), Positives = 143/243 (58%), Gaps = 8/243 (3%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  A+K A + S  KS+FLA +SHEIRTPL  I+GF+ +++     P    R ++Y   
Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSELTP----RQLDYLGT 325

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I++S + +L I+N++LD SKIE+GK+ L   P +L + + + ++++   A+ K++ + + 
Sbjct: 326 IEKSADSLLGIINEILDFSKIEAGKLVLDSIPFNLRDLLQDTLTILAPAAHAKQLELVSL 385

Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQI---IISTTHTSNEEVILRVRDTG 745
              + P  ++ D   +KQI  N++SNAI FT  G  +   ++   H  + ++ + ++DTG
Sbjct: 386 VYRDTPLSLVGDPLRLKQILTNLVSNAIKFTREGTIVARAMLEEEHEDSVQLRISIQDTG 445

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G++N ++    + F Q  NS   +  GTGLGL ++K +++   G+  + STP +G+   
Sbjct: 446 IGLSNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFW 505

Query: 806 IIF 808
           I  
Sbjct: 506 ISL 508


>gi|320353266|ref|YP_004194605.1| multi-sensor signal transduction histidine kinase [Desulfobulbus
           propionicus DSM 2032]
 gi|320121768|gb|ADW17314.1| multi-sensor signal transduction histidine kinase [Desulfobulbus
           propionicus DSM 2032]
          Length = 584

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 68/395 (17%), Positives = 144/395 (36%), Gaps = 36/395 (9%)

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
             + ++++   +   + E+  D    ++  G+I   + +V  + GY   +++ +    F 
Sbjct: 192 EAELRLKLSERRYRQLYESIVDISFEVDHRGVIQMVSPSVETILGYRPSEVIGQAIVDFY 251

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLT 557
            +     +  +L  I                 K    + L I    +       +     
Sbjct: 252 SEPEQRSV--FLEAI--HGNGAVDNFQVQFRRKGGGDVWLSINAHLIFDDLGRPTGTHGI 307

Query: 558 MHDISEWKQEKNKLSHAKKIAEKES--SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
             DIS  K+ + + +  ++   +             ++H+    L  I+G++E +  +  
Sbjct: 308 ARDISRIKKAEEEKALLERSLVQSQKMEAIGTLAGGIAHDFNNILAGIMGYAE-LMQRDL 366

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
                 R+ EY   I  +      ++  +L  S+    +     +PV + + + E I L+
Sbjct: 367 ARASTSRFNEYLRNILFASERAQHLIRQILAFSR----QSPTVMQPVRMRQVIEEVILLI 422

Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT-PSGGQIIIST----- 729
           +       I I T   +    ++AD   + Q+ +N+ +NA       GG + I       
Sbjct: 423 RASLPT-TIAIETRLRSESC-VIADQVQMHQVLMNLCTNAGQAMKHQGGTLTIRLDDVVL 480

Query: 730 ---------THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
                           V ++V DTG G+  +  ++   PF         +GEGTGLGL +
Sbjct: 481 DQQIADCHQRLEPGPFVRIQVSDTGQGIPEHIRDRIFDPFFTTKP----QGEGTGLGLSM 536

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
              +V A  G   + ST  +G+   +  P  + + 
Sbjct: 537 VHGIVSAMKGCILVESTEGRGSCFTLYLPRTEEAA 571



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/246 (6%), Positives = 63/246 (25%), Gaps = 8/246 (3%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK 146
           + +D  G ++ +S  +   +G    ++IG  + D       +  +   + +         
Sbjct: 216 FEVDHRGVIQMVSPSVETILGYRPSEVIGQAIVDF--YSEPEQRSVFLEAIHGNGAVDNF 273

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
              +  +G    V + + A  I+      +G  G  I                L++    
Sbjct: 274 QVQFRRKGGGD-VWLSINAHLIFDDLGRPTGTHG--IARDISRIKKAEEEKALLERSLVQ 330

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
             +++   +      +D  +  +         +        +  ++ L+   +    ++ 
Sbjct: 331 SQKMEAIGTLAGGIAHDFNNILAGIMGYAELMQRDLARASTSRFNEYLRNILFASERAQH 390

Query: 267 SSLPEQEDFHTIN---LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
                                ++     +          ++        +     +    
Sbjct: 391 LIRQILAFSRQSPTVMQPVRMRQVIEEVILLIRASLPTTIAIETRLRSESCVIADQVQMH 450

Query: 324 ETVDKC 329
           + +   
Sbjct: 451 QVLMNL 456


>gi|300248807|gb|ADJ95232.1| ExpS [Erwinia chrysanthemi]
          Length = 922

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 89/343 (25%), Positives = 152/343 (44%), Gaps = 21/343 (6%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           L  Y +   +  P    +       ++      L   +   +             +++ +
Sbjct: 190 LLAYRLMRDVTAPIRNMV-----ETVDRIRRGQLDSRVEGHMLGELDMLKNGINSMAMSL 244

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                          +D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 245 TAYHEEMQQNIDQATYDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTP 304

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+     Q           +Y   I+RS N +L+I+ND+LD SK+E+GK+ L  
Sbjct: 305 LNGVIGFT----RQTLKTQLTTTQKDYLQTIERSANNLLNIINDVLDFSKLEAGKLVLEN 360

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P SL   + E I L+   A+EK + +  +  +++P   + D   ++QI  N+L NAI F
Sbjct: 361 IPFSLHNTLDEVIMLLAHTAHEKGLELTLNIQHDVPEQFVGDPLRLQQIITNLLGNAIKF 420

Query: 719 TPSGGQIIISTTHTSNEEVI----LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           T  G  I I       E +     ++++DTG+G+   +  +  + F Q   S   +  GT
Sbjct: 421 TEQG-NIDIRIEKRKQENLRVLLEIQIKDTGIGIAEAQQTQLFQAFRQADTSISRQHGGT 479

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
           GLGL + + +V    G     S   +GT       +  T +PH
Sbjct: 480 GLGLVITQRLVREMGGDISFHSKLNQGTTFWCT--VNLTLNPH 520


>gi|307730482|ref|YP_003907706.1| histidine kinase [Burkholderia sp. CCGE1003]
 gi|307585017|gb|ADN58415.1| histidine kinase [Burkholderia sp. CCGE1003]
          Length = 437

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 78/412 (18%), Positives = 160/412 (38%), Gaps = 35/412 (8%)

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK-----RKMEIEVMQLCSILEATS 462
                   +      + P      G     +     +     R++E +  +    ++A+ 
Sbjct: 49  HKERLWRLLDAPVYGEVPSAPGIWGEIYYRLHKLAKRWHAQVRQVEQQHSRFIQAIQASP 108

Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522
           +G+A+++    I   N      FG      LR+  T  +          YL         
Sbjct: 109 NGVAMLDDHDQIEWCNAISEVHFGLDARRDLRQHITHLVR---QPEFVRYLN-------S 158

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES 582
              E++ +     EK  ++  +       +   +   DI+E ++                
Sbjct: 159 HQYEEMLIMRGMGEKRQNVLSVQVFPYGENRKLVLSQDITELERT--------------D 204

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
           + + DF+A VSHE++TPLT + GF E ++     PL       Y   +++  + +  IVN
Sbjct: 205 AMRRDFVANVSHELKTPLTVLSGFLETMRE---LPLAEAERARYLELMEQQASRMRHIVN 261

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702
           DLL ++K+E        + + +   +       +  +++    I       +  +     
Sbjct: 262 DLLVLAKLEGDNKPPSDQMIDMRAVLRHLRDDAESLSSDHH-EIVFEADEGL-TVTGVET 319

Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
            +     N+++NAI +TP GG I +S         +  V D+G+G+   ++ +  + F +
Sbjct: 320 EILSAFGNLVTNAIRYTPDGGAIKVSWQAQ-GGAAVFSVTDSGLGIPAADIPRLTERFYR 378

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           +  S+     GTGLGL + K ++  +  +  + S   +G+   + FPLY T+
Sbjct: 379 VDRSRSRDTGGTGLGLAIVKHVLQRHDAQLDVKSEEGRGSTFSVKFPLYRTT 430


>gi|254446207|ref|ZP_05059683.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198260515|gb|EDY84823.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 664

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 80/259 (30%), Positives = 131/259 (50%), Gaps = 17/259 (6%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN-QRFGPLGNP 621
           + + +   L  A + A   S  K++FLA  SHE+RTPL  IIG+ E I+  Q  GP  N 
Sbjct: 259 DLRIQNLALQEAMETANAASKAKTEFLATTSHELRTPLNPIIGYVEKIQRAQPNGPHSND 318

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
                   I +S   +L ++ D+LD S+IESG + L  + + ++E     + L+   A +
Sbjct: 319 -----LRLIKQSAEQLLRLIEDILDFSRIESGTLKLENDQIDVEELCESVVKLLSEQAEQ 373

Query: 682 KRILIRTSFANN----IPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH---- 731
           K + +  SF  N    +P   I  D   ++Q+ LN+ +NAI FT  G  + I  +     
Sbjct: 374 KGLDLNYSFNENRELGMPEKDISIDAGRLRQVLLNLTNNAIKFTNEGS-VTIKCSLNHDP 432

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
           +   ++I+ V DTG+G+ + + +K  KPF Q+ +S      G GLGL + + +V A  G+
Sbjct: 433 SEKADLIIEVIDTGIGIDSQDQDKLFKPFSQLDSSWTREYGGMGLGLAICQRIVKAMGGR 492

Query: 792 FYIFSTPAKGTLIEIIFPL 810
              FS   +G+      P+
Sbjct: 493 LTCFSEIGRGSRFSAQIPV 511


>gi|37523980|ref|NP_927357.1| two-component hybrid sensor and regulator [Gloeobacter violaceus
           PCC 7421]
 gi|35214986|dbj|BAC92352.1| two-component hybrid sensor and regulator [Gloeobacter violaceus
           PCC 7421]
          Length = 708

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 95/483 (19%), Positives = 178/483 (36%), Gaps = 54/483 (11%)

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
             S L            + +   R          R+        +      +     N  
Sbjct: 84  HFSCLYAHEDSERGRPTQDLEEARLQGRIALTGWRVRP----DGSRFWAEVVLSALRNPD 139

Query: 425 PENMPQNGIEPEDVDTRINKRKM---EIEVMQLCSILEA--------------TSDGIAI 467
            +      +  +    R+ + ++   E E  +L  +L                T+  + I
Sbjct: 140 GQVSGYAMVTHDVTAGRLAEERLAGLEQERERLEQLLSGGDADLPTLAAVAQLTNHSVVI 199

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE-QNTPSVMNHYLTEILSLDLRQTLE 526
            + E  ++  N   + L G+ ++++        L+   T      Y+ E L      T+E
Sbjct: 200 TDVERRVVWVNAGFTALTGFTLDEVRGHNPGALLQGPQTDPATVMYMRERLQRGEGYTVE 259

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKE--- 581
            +  G   ++  L++ +   +        +     +++E ++   +     +  ++    
Sbjct: 260 ILNYGKNGDQYWLAIEVQPVRDGTGKLTHFIAVQRNVTEQRRAGQEHQALLEREQRAREL 319

Query: 582 ----SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
               +  K +FLA +SHE+RTPL  I+GF+ +++    G L           I+R+    
Sbjct: 320 AEQNNRLKDEFLATLSHELRTPLNGILGFAGLLRR---GRLDTETARRAVEIIERNAQAQ 376

Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697
             ++ DLLD+S I +G  NL  +PV + E VS A++  ++ A  KRI +      +   +
Sbjct: 377 AQLIEDLLDMSSIAAGTFNLQVQPVEMAEVVSAAVAGQRIAAEAKRIRLELRLDPHAGLV 436

Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757
             D R + Q+  N+LSNA+ FTP  G+I +S    +N   I    DTGVG+    L    
Sbjct: 437 SGDRRRLLQVVANLLSNAVKFTPPDGRIEVSMRCVANAVAIAV-ADTGVGIGPEFLPYVF 495

Query: 758 KPFGQIPNSQQI--------RGEGTGLGLPLAKAMVDANMGKFYIFSTPAK--GTLIEII 807
             F Q   S                       + +V+ + G   + S   K  G    + 
Sbjct: 496 DRFRQADGSSTRLHGGLGLGLSL--------VRHIVETHGGSVQVQS-LGKSQGATFTVC 546

Query: 808 FPL 810
            PL
Sbjct: 547 LPL 549



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 48/467 (10%), Positives = 114/467 (24%), Gaps = 60/467 (12%)

Query: 49  FEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGN 108
            +     D   ES S+   +                    +D  G +   S    +    
Sbjct: 19  PQDQPCHDTTAESSSDEEGIGLSECLRLLIDDIEDYTILTLDGQGTIVGRSAGSERLC-- 76

Query: 109 YAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPI 168
            A   +G     +      +      DL + +       T W +         ++    +
Sbjct: 77  -AGDPLGRHFSCLYAHEDSERGRPTQDLEEARLQGRIALTGWRVRPDGSRFWAEVVLSAL 135

Query: 169 YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228
            + + + SG+    + H              L+++   L ++  G  +       +    
Sbjct: 136 RNPDGQVSGYA--MVTHDVTAGRLAEERLAGLEQERERLEQLLSGGDADLPTLAAVAQLT 193

Query: 229 SPPPHLRMKNK-----------------------------VSSLTEYYAHKDDVLKTEKY 259
           +    +    +                                 T+         + ++ 
Sbjct: 194 NHSVVITDVERRVVWVNAGFTALTGFTLDEVRGHNPGALLQGPQTDPATVMYMRERLQRG 253

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
              T E  +  +  D + + +     +   G L +           R          E E
Sbjct: 254 EGYTVEILNYGKNGDQYWLAIEVQPVRDGTGKLTHFIAVQRNVTEQRRAGQEHQALLERE 313

Query: 320 NLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
               E  ++                   FL    ++    +    G + LL   +L    
Sbjct: 314 QRARELAEQNN------------RLKDEFLATLSHELRTPLNGILGFAGLLRRGRLDTET 361

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED-V 438
           A + V +   +     A A+L     +  +  A TF    +  +  E +           
Sbjct: 362 ARRAVEIIERN---AQAQAQLIEDLLDMSSIAAGTFNLQVQPVEMAEVVSAAVAGQRIAA 418

Query: 439 DTRINKRKME----------IEVMQLCSILEATSDGIAIINREGIIL 475
           + +  + ++                L  +    S+ +     +G I 
Sbjct: 419 EAKRIRLELRLDPHAGLVSGDRRRLLQVVANLLSNAVKFTPPDGRIE 465


>gi|289768716|ref|ZP_06528094.1| sensory histidine kinase [Streptomyces lividans TK24]
 gi|289698915|gb|EFD66344.1| sensory histidine kinase [Streptomyces lividans TK24]
          Length = 1829

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 118/739 (15%), Positives = 252/739 (34%), Gaps = 58/739 (7%)

Query: 120  DVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFR 179
            D++  + I+    +  L    NT     TL         V  ++    I     +  G  
Sbjct: 895  DLTRTVTIEARGEVAQLADTFNT--MVRTLRSFADQVTKVAREVGTDGILGGQAQVPGVS 952

Query: 180  GFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK 239
            G           +  A       +   +         + K+                 N 
Sbjct: 953  G--TWKDLTESVNQMASNLTGQVRNIAMVTTAIAKGDLTKKIDIDARG-EILELKTTINT 1009

Query: 240  VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
            +      +A +   +  E          +     D    +L +   +      +     +
Sbjct: 1010 MVDQLSSFAEEVTRVAREVGTEGQLGGQARVRDVDGTWRDLTESVNEMAGNLTRQVRAIA 1069

Query: 300  FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTK------ 353
                +            +      E  D             +  AN     L        
Sbjct: 1070 RVATAVTRGDLNLKIDVDASGEISELQDYINKMIANLRDTTI--ANKEQDWLKGNLARIS 1127

Query: 354  --YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIA-ASARLHTIQWNRENS 410
               +   D++    L      P +S  +    + +   D    A A    + ++      
Sbjct: 1128 GLMQGRRDLQDVASLIMSELTPVVSAQHGAFFLAMPLVDGQEQAGAEGDAYELRMLGSYG 1187

Query: 411  LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470
             +M  +P                +   +        ++I       + EA    + ++  
Sbjct: 1188 YSMGSMPTSFRPGEALVGTAAQEKRTILVENAPSGYLKISS----GLGEAPPAQVIVLPV 1243

Query: 471  --EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY-----LTEILSLDLRQ 523
              EG +L       +L  +     ++K F   + +   + +N          +LS     
Sbjct: 1244 LFEGQVLGV----IELASFTPFTHIQKDFLNQIAEMIATSVNTISVNTKTEVLLSQSQEL 1299

Query: 524  TLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT-MHDI----SEWKQEKNKLSHAKKIA 578
            T +        E++  +L+    +L   +        DI    +E ++ +  L    +  
Sbjct: 1300 TEQLRERSEELEQRQKALQSSNAELEEKAELLAQQNRDIEVKNTEIEEARQVLEERAEQL 1359

Query: 579  EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
                 +KS+FLA +SHE+RTPL +++  ++++ +     L  P+ +E+A  I  +G+ +L
Sbjct: 1360 AVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNADANLT-PKQVEFAETIHGAGSDLL 1418

Query: 639  DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RI 697
             ++ND+LD+SK+++GKM++    ++L + V    +  +  + EK + +    +  +P  +
Sbjct: 1419 QLINDILDLSKVDAGKMDVSPTRIALVQLVDYVEATFRPLSAEKGLDLSVRVSPGLPATM 1478

Query: 698  LADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHT-------------------SNEEV 737
              D + + Q+  N+LSNA+ FT SG  +++I                          E +
Sbjct: 1479 HTDEQRLLQVLRNLLSNAVKFTDSGSVELVIRPARDEVPTAIREQLLEAGSMNDPDAELI 1538

Query: 738  ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
               V DTG+G+   +++   + F Q   +   +  GTGLGL +++ +     G+ +  S 
Sbjct: 1539 AFSVSDTGIGIAASKMQVIFEAFKQADGTTSRKYGGTGLGLSISREIAQLLGGEIHAQSE 1598

Query: 798  PAKGTLIEIIFPLYDTSHP 816
            P +G+   +  PL+ +  P
Sbjct: 1599 PGRGSTFTLYLPLHPSELP 1617


>gi|316934854|ref|YP_004109836.1| integral membrane sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris DX-1]
 gi|315602568|gb|ADU45103.1| integral membrane sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris DX-1]
          Length = 530

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 104/249 (41%), Positives = 156/249 (62%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I+E +Q K     A+  AE  +  KS FLA++SHE+RTPL AI+GFSEV+K++ FG    
Sbjct: 240 IAELEQSKAISDEARHRAEAANVAKSRFLAQMSHELRTPLNAILGFSEVMKSEIFGAHAV 299

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
           P Y +Y+  I  SG  +L+++N++LD+S+IE+G+  L+ E +SL   VS+   L++L A 
Sbjct: 300 PAYKDYSADIHNSGVHLLNLINEILDLSRIEAGRYELNEEAISLVHVVSDCHHLLKLRAT 359

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
            + I I   F   +PRI  D R+V+Q+ LN+LSNAI FTP GG+I +    T++    L 
Sbjct: 360 SRGITIHEVFEQGMPRIWGDERAVRQVVLNLLSNAIKFTPQGGEIWLKAGWTASGGQYLS 419

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V+DTG G+   E+   +  FGQ  NS +   +G GLGLP+AK+++D + G F + S    
Sbjct: 420 VKDTGSGIPEEEIPIVLASFGQGSNSIKSAEQGAGLGLPIAKSLIDMHGGTFTLKSKLRI 479

Query: 801 GTLIEIIFP 809
           GT + + FP
Sbjct: 480 GTEVIVTFP 488


>gi|237719384|ref|ZP_04549865.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229451244|gb|EEO57035.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 570

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 97/510 (19%), Positives = 175/510 (34%), Gaps = 49/510 (9%)

Query: 324 ETVDKCPIPFFVYS---HGNLFYANPSFLLLTKYKSVDDIEIAG----------GLSTLL 370
           + +D  P P FV         +Y N      +   S + I                  + 
Sbjct: 85  DILDNLPFPIFVKDITNDFRYYYWNKESAAQSGISSEEAIGHTDYEIYGEERGEKYRHID 144

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
                +     K       D       A    I W  E    +                 
Sbjct: 145 KELIQAGKVYRKEEKYTTPDGITHDTIAVKSIISWEGEKKWLLATR-------------- 190

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLC-------SILEATSDGIAIINREGIILSTNRAVSK 483
                +    +  +R++     +L          L++   G+  I++   +         
Sbjct: 191 ----WDITQLKNYERELVAAKEELEKALKKQKLALKSIDFGLIYIDKNYRVQWEETRQIA 246

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
                   I  K                   + +                 E     +  
Sbjct: 247 SLVKGRRYIPGKICYQTSALRNEPCGQCAFKKAIEQGKIIRHTIRVDDVDFEVTATPVFG 306

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
             K+            +I+E  +    L  AK+ AE+ +  KS FLA +SHEIRTPL AI
Sbjct: 307 DEKETEIIGGLLR-FENITEKLKMDKMLQEAKEKAEESNRLKSAFLANMSHEIRTPLNAI 365

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +GFSE++              E+   I  +  L+L +++D+LD+SKIE+G M   F    
Sbjct: 366 VGFSEMVCQTEEEEE----RKEFVKIISSNNILLLQLIDDILDLSKIEAGTMEFTFAQTD 421

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
           ++E +      +Q   +   I I  +   +   +  D   + Q+ +N  +NA+ FTP G 
Sbjct: 422 INELMEGICRQMQEKNSSPDIQILFTEKADQCMMYTDRIRLSQVIINFTNNALKFTPKGS 481

Query: 724 QIIISTTHTS-NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
            I +        +E+   V+DTG+G+   +++K  + F ++ +      +GTGLGL + +
Sbjct: 482 -IEMGYRIEEAKDEIYFYVKDTGIGIPADKIDKVFERFVKLNSFI----KGTGLGLAICR 536

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
            +V+   G   + S   +G+      P  +
Sbjct: 537 VIVERLGGVIGVESKEGEGSRFWFRIPRSE 566


>gi|154276398|ref|XP_001539044.1| hypothetical protein HCAG_06649 [Ajellomyces capsulatus NAm1]
 gi|150414117|gb|EDN09482.1| hypothetical protein HCAG_06649 [Ajellomyces capsulatus NAm1]
          Length = 2319

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 72/250 (28%), Positives = 126/250 (50%), Gaps = 10/250 (4%)

Query: 565  KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
            K  + +  H  K+ E  +  KS FLA VSH++RTP+  +IG SE++K        +    
Sbjct: 1788 KVAEAEAKHNVKLKEDAAKAKSIFLANVSHDLRTPMNGVIGLSELLKKTNL----DREQD 1843

Query: 625  EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
             Y   I    + +L ++ND+LD SK+E+GKM +   P++L E ++E +  ++    ++ +
Sbjct: 1844 GYVESIRVCADTLLTLINDILDFSKLEAGKMKVSTVPLNLRETIAEVVRALRYTHRDRGL 1903

Query: 685  LIRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILR- 740
                      P+  +L D   + QI +N+LSN+  FTP G   +        +  + +  
Sbjct: 1904 QTIEDLDGVDPKLLVLGDPVRLHQIFMNLLSNSYKFTPKGSVTVKAKAADEDDGRIRITC 1963

Query: 741  -VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA-NMGKFYIFSTP 798
             V DTG+G++  +L +  +PF Q  +S      G+GLGL + KA+++    GK ++ S  
Sbjct: 1964 KVADTGIGISGEQLVRLFRPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGKIWLQSEE 2023

Query: 799  AKGTLIEIIF 808
              GT +    
Sbjct: 2024 GVGTTVTFTL 2033


>gi|21224094|ref|NP_629873.1| sensory histidine kinase [Streptomyces coelicolor A3(2)]
 gi|3294236|emb|CAA19849.1| putative sensory histidine kinase [Streptomyces coelicolor A3(2)]
          Length = 1829

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 118/739 (15%), Positives = 252/739 (34%), Gaps = 58/739 (7%)

Query: 120  DVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFR 179
            D++  + I+    +  L    NT     TL         V  ++    I     +  G  
Sbjct: 895  DLTRTVTIEARGEVAQLADTFNT--MVRTLRSFADQVTKVAREVGTDGILGGQAQVPGVS 952

Query: 180  GFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK 239
            G           +  A       +   +         + K+                 N 
Sbjct: 953  G--TWKDLTESVNQMASNLTGQVRNIAMVTTAIAKGDLTKKIDIDARG-EILELKTTINT 1009

Query: 240  VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
            +      +A +   +  E          +     D    +L +   +      +     +
Sbjct: 1010 MVDQLSSFAEEVTRVAREVGTEGQLGGQARVRDVDGTWRDLTESVNEMAGNLTRQVRAIA 1069

Query: 300  FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTK------ 353
                +            +      E  D             +  AN     L        
Sbjct: 1070 RVATAVTRGDLNLKIDVDASGEISELQDYINKMIANLRDTTI--ANKEQDWLKGNLARIS 1127

Query: 354  --YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIA-ASARLHTIQWNRENS 410
               +   D++    L      P +S  +    + +   D    A A    + ++      
Sbjct: 1128 GLMQGRRDLQDVASLIMSELTPVVSAQHGAFFLAMPLVDGQEQAGAEGDAYELRMLGSYG 1187

Query: 411  LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470
             +M  +P                +   +        ++I       + EA    + ++  
Sbjct: 1188 YSMGSMPTSFRPGEALVGTAAQEKRTILVENAPSGYLKISS----GLGEAPPAQVIVLPV 1243

Query: 471  --EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY-----LTEILSLDLRQ 523
              EG +L       +L  +     ++K F   + +   + +N          +LS     
Sbjct: 1244 LFEGQVLGV----IELASFTPFTHIQKDFLNQIAEMIATSVNTISVNTKTEVLLSQSQEL 1299

Query: 524  TLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT-MHDI----SEWKQEKNKLSHAKKIA 578
            T +        E++  +L+    +L   +        DI    +E ++ +  L    +  
Sbjct: 1300 TEQLRERSEELEQRQKALQSSNAELEEKAELLAQQNRDIEVKNTEIEEARQVLEERAEQL 1359

Query: 579  EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
                 +KS+FLA +SHE+RTPL +++  ++++ +     L  P+ +E+A  I  +G+ +L
Sbjct: 1360 AVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNADANLT-PKQVEFAETIHGAGSDLL 1418

Query: 639  DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RI 697
             ++ND+LD+SK+++GKM++    ++L + V    +  +  + EK + +    +  +P  +
Sbjct: 1419 QLINDILDLSKVDAGKMDVSPTRIALVQLVDYVEATFRPLSAEKGLDLSVRVSPGLPATM 1478

Query: 698  LADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHT-------------------SNEEV 737
              D + + Q+  N+LSNA+ FT SG  +++I                          E +
Sbjct: 1479 HTDEQRLLQVLRNLLSNAVKFTDSGSVELVIRPARDEVPTAIREQLLEAGSMNDPDAELI 1538

Query: 738  ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
               V DTG+G+   +++   + F Q   +   +  GTGLGL +++ +     G+ +  S 
Sbjct: 1539 AFSVSDTGIGIAASKMQVIFEAFKQADGTTSRKYGGTGLGLSISREIAQLLGGEIHAQSE 1598

Query: 798  PAKGTLIEIIFPLYDTSHP 816
            P +G+   +  PL+ +  P
Sbjct: 1599 PGRGSTFTLYLPLHPSELP 1617


>gi|329961320|ref|ZP_08299466.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides fluxus YIT 12057]
 gi|328531926|gb|EGF58746.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides fluxus YIT 12057]
          Length = 1040

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 89/415 (21%), Positives = 173/415 (41%), Gaps = 31/415 (7%)

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE- 471
           +        N        +    +  +    + ++     +L   L+  +      + + 
Sbjct: 494 VDTFYDIVVNLNGNEQYMDVFCIDSTELHHVQEQLRSINHKLSMALDIANIVPWKWDLQS 553

Query: 472 GIIL-STNRAVSKLFGYPVEDILRKPFTVF-------LEQNTPSVMNHYLTEILSLDLRQ 523
             IL   N+ +        E+I  +  +V        + +     +      +++   ++
Sbjct: 554 HTILCDVNKPIE--LSTHHEEITEEQLSVPDNEYFAKIHKEDLPKVKEAYANLIAGRTQK 611

Query: 524 TLEKITLGSTKEEK----LLSLRIIIKKLPFSSC---YSLTMHDISEWKQEKNKLSHAKK 576
             E+  + +          +  +  I+             +   I+E K+ ++ L  AK 
Sbjct: 612 VKEEYRILNHINGHKHIDWVEAQAGIESYDDQGNPQTLVGSSLVITERKKMEDDLISAKN 671

Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
            AE+ +  KS FLA +SHEIRTPL AI+GFS ++              EY + I+ +  L
Sbjct: 672 RAEESNRLKSAFLANMSHEIRTPLNAIVGFSGILA----SIEEEKEKQEYVSIIENNNAL 727

Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN-EKRILIRTSFANNIP 695
           +L +++D+LD+SKIE+G M   +    L++ ++E  S ++L     K I +       + 
Sbjct: 728 LLQLISDILDLSKIEAGTMEFIYSDFELNKIMAELESSLRLKLPPNKNISLTFEPQLPVC 787

Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI-LRVRDTGVGMTNYELE 754
            I A+   + QI +N+++NAI FT +G    I   +    +++   V DTG G+   + E
Sbjct: 788 YIHAEHNRLSQIIINLVTNAIKFTDAGS---IRFGYEKRNKILYFYVSDTGCGIPKDKKE 844

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +    F ++ N      +GTGLGL + + +V    G+  + S   KG+      P
Sbjct: 845 EIFGRFVKLNNF----AQGTGLGLSICRTLVQHMGGEIGLDSAIGKGSTFWFTLP 895


>gi|325105302|ref|YP_004274956.1| multi-sensor signal transduction histidine kinase [Pedobacter
           saltans DSM 12145]
 gi|324974150|gb|ADY53134.1| multi-sensor signal transduction histidine kinase [Pedobacter
           saltans DSM 12145]
          Length = 491

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 84/382 (21%), Positives = 153/382 (40%), Gaps = 31/382 (8%)

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
           ++ E    +  + ++  +V  L   LE+          EG I   N+   K FGY    +
Sbjct: 134 LQSEIEIRKKVQEELRKKVEHLHFTLESLPQIAFTATEEGDIDFVNK---KWFGYS---V 187

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI-IIKKLPFS 551
             K F   +      +   +   +L+      LE          +     +  I  +   
Sbjct: 188 TDKNF-PPVHPEDKDIFQEWSIAMLTD---SLLEMEVRIKKINGEAYRFHLLRIVPIKED 243

Query: 552 SC---YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                +  T  DI + KQ + K              K +FL+  SHE++TPLT+I  + +
Sbjct: 244 GRVVKWVGTFTDIEDQKQIEKK--------------KDEFLSIASHELKTPLTSIKAYVQ 289

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
            +  +      N     Y + +    + + +++ DLLDISKIE+GK+ L+  P  L   +
Sbjct: 290 -LLERSLKAEDNSPVGTYIHRVQSQLDKLQNLITDLLDISKIENGKLKLNKRPFCLSSLI 348

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
              ++ ++      ++ I          I+AD   V+Q+ +N L+NA+ + P   +III 
Sbjct: 349 DNVVNTIKHTYGNVQLEILQEGERLDREIIADENRVEQVLINYLTNALKYAPDSDKIIIK 408

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
           T     E V + V D G G++    +     F ++     ++ +G G+GL +   ++  +
Sbjct: 409 TE-KMREFVKVSVTDFGTGISENNQKSIFDKFYRVEE-TSVKFQGLGIGLYICSEIIRQH 466

Query: 789 MGKFYIFSTPAKGTLIEIIFPL 810
            G   I S    G       PL
Sbjct: 467 NGDVGINSKLGNGATFYFTLPL 488


>gi|300721766|ref|YP_003711044.1| sensory histidine kinase in two-component regulatory system with
           PhoB [Xenorhabdus nematophila ATCC 19061]
 gi|297628261|emb|CBJ88820.1| sensory histidine kinase in two-component regulatory system with
           PhoB, regulation of Pi uptake, senses Pi [Xenorhabdus
           nematophila ATCC 19061]
          Length = 436

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 86/424 (20%), Positives = 161/424 (37%), Gaps = 49/424 (11%)

Query: 396 ASARLHTIQWNR------ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449
             A L  + W+        + L +       A +        GI       R  +R++ +
Sbjct: 36  VIALLSALGWHGYNLLKLSDWLWLDRSSLPPAGRGGWEPIFYGIHLMQQRNRKRRRELAL 95

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
            + +  S  E+  D I +I  EG I   NR    L G+   +   +     L     S  
Sbjct: 96  LIRRFRSGAESLPDAIVMITTEGNIFWCNRLAQHLLGFRWPEDNGQHIFNLLRYPDFS-- 153

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN 569
                 I + D  + L             +  R++           +  HDI++ +  +N
Sbjct: 154 ----RYITANDFSRPLSIEL----NNGNRVEFRLMPY---SEKQLLMVAHDITQKRLLEN 202

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
                          + DF A VSHE+RTPLT + G+ E+++ Q     GN    +  + 
Sbjct: 203 T--------------RRDFFANVSHELRTPLTVLQGYLEMMQEQELDSQGN---QKAVST 245

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS--EAISLVQLYA---NEKRI 684
           +      + ++V  LL +SKIE+G        + ++E V     + L++  A      + 
Sbjct: 246 MQEQIRRMDNLVKQLLHLSKIETGPQ------IDMNEIVDVPTMLKLLRQEALSPGNNQY 299

Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744
            I  +    + ++  +   ++    N++ NAI+ T  G +I +S  + S   +  +V D 
Sbjct: 300 DIVFNIDEKL-KVFGNEDQLRSAMSNLVYNAINHTSPGTRIEVSWLNVSQGAL-FKVEDN 357

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G G++   L +  + F ++  ++  +  G GLGL + K  +        I S   KG   
Sbjct: 358 GGGISAEHLPRLTERFYRVDRARSRQTGGNGLGLAIVKHALHHYNTHLDISSELGKGATF 417

Query: 805 EIIF 808
             + 
Sbjct: 418 SFLL 421


>gi|222100206|ref|YP_002534774.1| Sensor protein [Thermotoga neapolitana DSM 4359]
 gi|221572596|gb|ACM23408.1| Sensor protein [Thermotoga neapolitana DSM 4359]
          Length = 744

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 100/564 (17%), Positives = 192/564 (34%), Gaps = 40/564 (7%)

Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
           +        +L  +  +    E    +      + +            +  L        
Sbjct: 206 ERAFNFDRAVLLKKNDATNSLEVVSALGGETRQEHEELKRYLRRRTLRYTDLVQFLREEA 265

Query: 312 -----SAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
                   F E            PI   V    +    +   L    Y++ D +E     
Sbjct: 266 LTFSFETSFSERLKRRRFYYRGHPIFERVVLRKSTVRVSRDILRKMGYEAEDVLE----- 320

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
                    S++  + P++        +    +         +   +             
Sbjct: 321 ------ALRSESFVVFPLLGRWDTLGAVVVDNKFSERPITDLDLDVLKLFSESAGLALEN 374

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
            +    ++ + +D +     +E       SILE+    I  ++R+G I   N+    LFG
Sbjct: 375 AINYEDLKRKTLDLQRQNELVEKLKNFSESILESLEAAIITLDRDGRITEWNKKSEVLFG 434

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
           Y  E +L K             +   +  +   +                +   LR    
Sbjct: 435 YRKEQVLGKRLKNLPGFEEIGAIAESV--MEEHEPVFLNFYKFQEKYFNVRFSPLRNTKT 492

Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
           +L       +T+ D++E  + + +    ++++        +  ARV+HEIR P+T I GF
Sbjct: 493 QLLE--GVIITIDDVTELYRYEEERKKKERLSI-----LGEMTARVAHEIRNPITIIGGF 545

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
            + ++     P       +Y + I    + +  IV ++L+ SK E     L F   +L+E
Sbjct: 546 VKRMRKHIDDP---ETLKKYVDIITGELSRLEGIVREILEYSKEE---QILEFSEFNLNE 599

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726
            + E   L +    E  I       N   R+ AD   +KQ+ +N++ NAI  T   G+I 
Sbjct: 600 LIKEVYVLFEEKLREMNIDFFFETDNEDLRVKADRSRIKQVLINLVQNAIEATGENGKIK 659

Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
           I  +        + V ++G  +     EK   PF         + +GTGLGLP+ + +V+
Sbjct: 660 IK-SEDVYNVARVSVWNSGPPIPEELKEKIFSPFFTT------KTQGTGLGLPICRKIVE 712

Query: 787 -ANMGKFYIFSTPAKGTLIEIIFP 809
             + GK ++ +T   G +     P
Sbjct: 713 DEHGGKIWVENTEG-GVMFIFEIP 735


>gi|326801633|ref|YP_004319452.1| multi-sensor signal transduction histidine kinase [Sphingobacterium
           sp. 21]
 gi|326552397|gb|ADZ80782.1| multi-sensor signal transduction histidine kinase [Sphingobacterium
           sp. 21]
          Length = 575

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 79/394 (20%), Positives = 170/394 (43%), Gaps = 31/394 (7%)

Query: 429 PQNGIEPEDVDTRINK------RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
            +       +  ++ +       ++ +E  ++ +++    D +  ++   +++ TN    
Sbjct: 201 GELAHSFNIMAEKLEEYAGSNLSRLLMEKKRIETLINNMHDPVIGLDENQVVIFTNNEAL 260

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE----EKL 538
           ++ G+  E+++ K        N    +      +      +          KE    ++ 
Sbjct: 261 QIVGFKKEEVIGKKIIELALYNDLLRLLAKDLNLQETKPTKKEPIKIFADGKESFFEKEH 320

Query: 539 LSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
           + + I+           + + + +I+ ++              +    K++F+A VSHE+
Sbjct: 321 IPINIVPTGETRPQFIGHVIMLKNITPFR--------------ELDLAKTNFIATVSHEL 366

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           +TP+++I    E++ N+  G L N +  +    I    N +L I  +LL++S++E+G + 
Sbjct: 367 KTPISSIKMSLELLNNKLTGSLNNEQQ-QLVAGIAEDSNRLLRITGELLNMSQVETGNIQ 425

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716
           L+      +E +  A+S VQ  A+ K I       + +P +  D      +  N LSNAI
Sbjct: 426 LNLRQSKPEEILHYALSAVQTAADHKMIHFDLQVEDPLPNVKVDPEKTAWVLTNFLSNAI 485

Query: 717 HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
            ++P  G IIIS    +   +   V+D G G+     ++  + + QIP S +    G+GL
Sbjct: 486 RYSPEQGTIIISIRLEAK-VLRFSVKDNGRGIDERYTQRIFERYFQIPGSNRS---GSGL 541

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           GL ++K  ++A  G+  + S    G+     FP+
Sbjct: 542 GLAISKEFIEAQGGEIGVESALGIGSTFYFSFPV 575


>gi|317476674|ref|ZP_07935918.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
 gi|316907137|gb|EFV28847.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
          Length = 867

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 92/528 (17%), Positives = 186/528 (35%), Gaps = 29/528 (5%)

Query: 293 QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLL 351
           ++N  E  + +  +    +     E  +   +           Y    ++ + N +   +
Sbjct: 352 RSNRHELRKRIQAQTRLMIQQRLVEQRDEFDKMFCSIRDGLITYDTEMHIHFVNRALAEM 411

Query: 352 TKYKSVDDIE---IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
               S   +          ++       +N     +     D+  +    +    +  + 
Sbjct: 412 LGLSSDTYMARSYEGQVAGSIFHIYMNGENILPTLLEQVVRDKKPVVIPEKAFMQENVKG 471

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468
               ++        +               D        E++       +E +S      
Sbjct: 472 TYFPVSGEVVPIFAKDKLTGMAIVCRNISED--------EMQRRFFGMAIEESSIYPWQY 523

Query: 469 NREGIILSTNRAVSKLFGYPVE--DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
           N           + K F Y      I R+     +       +  +   I+      +  
Sbjct: 524 NTRLKCFHFPVGLLKRFNYSDHTGYISREELDRVIHPEDLLRIRKHFDSIILGREPNS-R 582

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSC-----YSLTMHDISEWKQEKNKLSHAKKIAEKE 581
                                    +             I  +K  +++L  A+  A + 
Sbjct: 583 MSFRLQNTAGGYEWWEFRSTAYEGLTADIPYMVLGVCQSIQRYKNTEDELIAARDKALQA 642

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
              KS FLA +SHEIRTPL AI+GFS+++K+       +    ++   I+ +  L+L ++
Sbjct: 643 DKLKSAFLANMSHEIRTPLNAIVGFSDLLKD--LEGFSSEEVQQFVETININCTLLLALM 700

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILAD 700
           ND+LD+S+IESG M+  F   +L   + +     +L   +  + +RT F     + ++ D
Sbjct: 701 NDILDLSRIESGTMDFRFSSYNLTFIMQQVYDSQRLSMPQ-GVELRTDFPEGTGKSMITD 759

Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760
              +KQ+  N+++NA  FT  G  I++      +   ++ V DTG G+++  L    + F
Sbjct: 760 SVRLKQVVNNLINNAKKFTTKG-YILLGYRVEDSGHTVIFVEDTGSGISDENLGHIFERF 818

Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            +  N      +G GLGL + + +V+   G   + S   KGT  E+  
Sbjct: 819 YKADNFT----QGAGLGLSICQTIVERLNGTITVTSKLGKGTRFEVRI 862



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 18/209 (8%), Positives = 61/209 (29%), Gaps = 19/209 (9%)

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK--- 444
             D   +     +  I       +                +            +  +   
Sbjct: 307 HVDVESVEEQGSILNIPLMDRYKVWFILFYSVTVGALVVLVVWLYRSNRHELRKRIQAQT 366

Query: 445 -----RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT- 498
                +++  +  +   +  +  DG+   + E  I   NRA++++ G   +  + + +  
Sbjct: 367 RLMIQQRLVEQRDEFDKMFCSIRDGLITYDTEMHIHFVNRALAEMLGLSSDTYMARSYEG 426

Query: 499 ------VFLEQNTPSVMNHYLTEILSLDLRQTL-EKITLGSTKEEKLLSLRIIIKKLPFS 551
                   +  N  +++   L +++       + EK  +    +     +   +  +   
Sbjct: 427 QVAGSIFHIYMNGENILPTLLEQVVRDKKPVVIPEKAFMQENVKGTYFPVSGEVVPIFAK 486

Query: 552 S---CYSLTMHDISEWKQEKNKLSHAKKI 577
                 ++   +ISE + ++     A + 
Sbjct: 487 DKLTGMAIVCRNISEDEMQRRFFGMAIEE 515


>gi|291569174|dbj|BAI91446.1| two-component hybrid sensor and regulator [Arthrospira platensis
           NIES-39]
          Length = 1009

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 65/268 (24%), Positives = 135/268 (50%), Gaps = 20/268 (7%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           + +++  +L      A   +  KS+FLA +SHE+RTPL AI+GF+++++  R       +
Sbjct: 507 QTQKQAAELKRVADAANVANRAKSEFLANMSHELRTPLNAILGFTQLLQRDRTLA---AK 563

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
           + EY   +++SG  +L ++ND+L++SKIE+G++  +    ++   +     ++QL A  K
Sbjct: 564 HQEYIKIVNQSGQHLLGLINDVLEMSKIEAGRITCNPTEFAIKRCLQAIQVMLQLKAESK 623

Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH---------- 731
            + +      ++P+ +  D   ++Q+ +N++SNAI FT  G ++ +  +           
Sbjct: 624 GLTLNFQVEESVPKFVRTDESKLRQVLVNLISNAIKFTREG-EVTLKVSVGQVDEDLGLF 682

Query: 732 TSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
             N      +   + D+G G+   E+    + F Q  + ++ + +GTGLGL +++  V+ 
Sbjct: 683 EDNGVSNTYLRFEIIDSGCGIATEEINDLFQAFKQTQSGRESQ-QGTGLGLVISQRFVNL 741

Query: 788 NMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
             G+  + S    G+      P+     
Sbjct: 742 MGGEIQVSSELGHGSCFSFQIPVGVADQ 769


>gi|332296827|ref|YP_004438749.1| integral membrane sensor signal transduction histidine kinase
           [Treponema brennaborense DSM 12168]
 gi|332179930|gb|AEE15618.1| integral membrane sensor signal transduction histidine kinase
           [Treponema brennaborense DSM 12168]
          Length = 624

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 76/384 (19%), Positives = 153/384 (39%), Gaps = 39/384 (10%)

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
               +  ++    ++ + + +    I   N A    F  P    L +  ++        +
Sbjct: 248 RRRDKFVAVFSGITEALILFDESFQIQEMNDAARDFFSVPQNAPLPENKSLIAVLRNTDI 307

Query: 509 MNHYLTEILSLDLRQTLEKITLGS-------TKEE-KLLSLRIIIKK--LPFSSCYSLTM 558
           +N     +     +   E  T           +   + + +R +  K  +   S + L +
Sbjct: 308 INFIKDTVHGSGKKNKTEIETQLLSSGSADSERNGTRSVLVRCVTIKTTVQPDSKFLLVI 367

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            DIS  K+ +                + DF+A VSHE++TP+T+I GF E +++      
Sbjct: 368 TDISRLKRLE--------------RVRKDFVANVSHELKTPITSIKGFIETLQDGALNE- 412

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
                  + + +D+    +++I+ DLL +SK+E     L  +  ++ E V++ +   Q+ 
Sbjct: 413 -PETAKRFLSIMDQQSTRLINIIEDLLTLSKLEQTGFTLATQQTTVQECVADVLLSQQIA 471

Query: 679 ANEKRILIRTSFANNIPRIL--ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
           A+ K I  R ++      I    +    +Q   NI++NA+ + P G  + +S      +E
Sbjct: 472 ADAKHIAFRQTYVPENEPIRIAVNEGLFEQALGNIVNNAVKYCPDGSTVSVSAERIPAQE 531

Query: 737 ---------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
                    V + + D G G+     ++  + F ++   +     GTGLGL +A+ +V+ 
Sbjct: 532 GTAARRYPAVKIVIEDDGAGIPEEYRKRIFERFFRVDKGRSRETGGTGLGLSIARHIVEL 591

Query: 788 NMGKFYIFSTPAK--GTLIEIIFP 809
           + G       P    G   EI  P
Sbjct: 592 HGGTIRACGRPGGEPGACFEITLP 615


>gi|298387248|ref|ZP_06996801.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
 gi|298259917|gb|EFI02788.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
          Length = 1039

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 77/337 (22%), Positives = 146/337 (43%), Gaps = 24/337 (7%)

Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKL 538
             +    P      K F           +      ++     +  E  ++        ++
Sbjct: 573 AEEQLAVPDYHYFSKIFK-----EDRKRVEQAYQNLIDGHSEKVKEEYRVVSTQKGFHRI 627

Query: 539 LSLRI-IIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
             +      +    +        +   I+E K+ + +L +AK  AE+ +  KS FLA +S
Sbjct: 628 EWVEAQAAVETRDENGKPLTLVGSSLVITERKKMEMELINAKNRAEESNRLKSAFLANMS 687

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HEIRTPL AI+GFS ++ +            EY + I+ +  L+L +++D+LD+SKIE+G
Sbjct: 688 HEIRTPLNAIVGFSGILASTEEEEEK----QEYVSIIENNNTLLLQLISDILDLSKIEAG 743

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713
            ++LH+  V +++ + +  ++ QL      + +             +   + Q+ +N+++
Sbjct: 744 TLDLHYSNVEINDLMKDLENMCQLKLKSDAVKLEFVAPEEPCFAHIEKNRLSQLIINLVT 803

Query: 714 NAIHFTPSGGQIIISTTH-TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           NAI FT  G    I   +   N E+   V DTG G+   + +     F ++ +      +
Sbjct: 804 NAIKFTIQGS---IRFGYKRQNNELYFYVADTGCGIPQDKQKSIFGRFVKLNSF----AQ 856

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GTGLGL + + +V+   GK  + S    G+      P
Sbjct: 857 GTGLGLSICQTLVEHMGGKIGVESEEGNGSTFWFTLP 893


>gi|269928977|ref|YP_003321298.1| multi-sensor signal transduction histidine kinase [Sphaerobacter
           thermophilus DSM 20745]
 gi|269788334|gb|ACZ40476.1| multi-sensor signal transduction histidine kinase [Sphaerobacter
           thermophilus DSM 20745]
          Length = 936

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 115/684 (16%), Positives = 233/684 (34%), Gaps = 61/684 (8%)

Query: 163 LAALPIYSRNREFSGFRGFGIVHVNR-VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEK 221
           L   P++    +  G    G        D+D   L +  D+    +   +   +      
Sbjct: 268 LLGAPMF-VEGDVIGVVQVGTTRPREFTDDDAELLQRVADRLALAIGRARAYEAERAARA 326

Query: 222 YDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLN 281
               ++Q      R    ++S  +Y       L     P L    +    +ED     + 
Sbjct: 327 ATEAAEQRAAFLARASQILASSLDYETTLAS-LARLTVPSLADWCTIDVVEEDGRVARVA 385

Query: 282 QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET-VDKCPIPFFVYSHGN 340
                     L       F        P   A       L P+   +  P          
Sbjct: 386 TAHADPEKEPLLRTMIRRFPTDLPATMPLRRALETGQPQLVPDLPEEHLP---------- 435

Query: 341 LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400
                     +T+ +++D +   G  S  + AP ++    +  + L  SD       A L
Sbjct: 436 ---------QVTRAETLDVVRRVGARS-FIVAPLVARERCLGAITLIYSDSGRRYGPADL 485

Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
             ++     +                                  R +    + L +ILE 
Sbjct: 486 ALVEDLARRAALAVDNARLYYEAQRSREQVERQAARLNLLAGAARLVAEASLDLRAILET 545

Query: 461 TSDGI-AIINREGIILSTNRAVSKL--FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
            S  +  I++   +I   +   ++L    +   D         +          ++  ++
Sbjct: 546 VSQRVAVILDGACVIGLLSPDDARLDPMAFHHGDPATLEALQTMPPVPLEDGEGFIASVM 605

Query: 518 SLDLRQTL-----EKITLGSTKEEKLL-------SLRIIIKKLPFSS-CYSLTMHDISEW 564
                        E+   G    ++         SL I    +   S    +   D  + 
Sbjct: 606 RSGEPLLRATIAPEEAQAGLMPGQEAFVAQFPIHSLLIAPLSVRGRSIGALIVWRDRPDH 665

Query: 565 KQEKNKLSHAK----------------KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
              +  LS  +                + A++    + +FL+  SHE++TPLT + G+  
Sbjct: 666 PYTEEDLSFLQDLADRAALAVDNAMLYRAAQEAVLAREEFLSVASHELKTPLTTVKGWVY 725

Query: 609 VIKNQ-RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
           ++ ++ R          E+ + +    +    ++ DLLD S+I+ G+++L  EPV+L++ 
Sbjct: 726 LLADEVRREDPDREAIREFTDELQSQIDRFEGLIADLLDASRIQQGRIDLRPEPVALNDL 785

Query: 668 VSEAISLVQLYANEK-RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726
               ++  +       R  +       I  I  D   ++Q+ +N++SNA+ ++P GG + 
Sbjct: 786 ARRVLARFEHAPERTPRHTLTLEAPEPIAGIW-DPDRLEQVLVNLISNALKYSPDGGDVR 844

Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
           +       + V L V D G+G+   + ++  +PF +   ++Q    GTGLGL + + +V 
Sbjct: 845 VRLR-RDGDVVELTVSDEGIGIAPADQKRLFQPFSRTEAARQRAS-GTGLGLYITQRIVR 902

Query: 787 ANMGKFYIFSTPAKGTLIEIIFPL 810
            + G   +FS P KGT + +  P+
Sbjct: 903 EHGGTIDLFSEPGKGTTVTVRLPV 926



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 48/122 (39%), Gaps = 4/122 (3%)

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
             ++LE+  D I I++++G I+  N     LFGY  E++L +P  + L +        + 
Sbjct: 20  FAALLESAPDAIVIVDQDGRIVLANSQTEHLFGYTREELLGQPVEMLLPERFREAHRAHR 79

Query: 514 TEILSLDLRQT--LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL--TMHDISEWKQEKN 569
              +     +   +     G  ++       I +  +       +   + D+++ K  + 
Sbjct: 80  AAYVKAPRTRPMGIGLELFGRRRDGSEFPTEISLSPVETPQGMLVTSIIRDVTDRKVAEA 139

Query: 570 KL 571
           + 
Sbjct: 140 ER 141



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 43/511 (8%), Positives = 120/511 (23%), Gaps = 29/511 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL----KRQNTWY 144
           +D  G +   + +     G    +++G  +  +      + +           + +    
Sbjct: 34  VDQDGRIVLANSQTEHLFGYTREELLGQPVEMLLPERFREAHRAHRAAYVKAPRTRPMGI 93

Query: 145 GKTTL-WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
           G        +G+    P +++  P+ +            I+          A   RL   
Sbjct: 94  GLELFGRRRDGS--EFPTEISLSPVETPQGMLVT----SIIRDVTDRKVAEAERARL--L 145

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
            S      +   + E+ +       +   HL +   + +  +      DV       L  
Sbjct: 146 LSEQAARAEAERTAERFRRLQAVTDTALAHLSLDALLEASLDRVREALDVETVTILLLDA 205

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
              +  P        +     +                 L   N   +            
Sbjct: 206 ERGALRPSATRGLDPDSLGEVEVPLGSGFAGRVAAERRTLIFDNPADVGRVHPNLRVQGV 265

Query: 324 ETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
           + +   P+       G +                + ++       L      +       
Sbjct: 266 QALLGAPMFVEGDVIGVVQVGTTR-PREFTDDDAELLQRVADRLALAIGRARAYEAERAA 324

Query: 384 VMLYRSDRTCIAASARLHTIQWNR-ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
                +     A  AR   I  +  +    +  +         +    + +E +    R+
Sbjct: 325 RAATEAAEQRAAFLARASQILASSLDYETTLASLARLTVPSLADWCTIDVVEEDGRVARV 384

Query: 443 NKRKMEIEVM-QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
                + E    L +++          +     L     + +        ++       L
Sbjct: 385 ATAHADPEKEPLLRTMIRRFP-----TD-----LPATMPLRRALETGQPQLVPDLPEEHL 434

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDI 561
            Q T +     +  +     R  +    +   +    ++L        +       + D+
Sbjct: 435 PQVTRAETLDVVRRV---GARSFIVAPLVARERCLGAITLIYSDSGRRYGPADLALVEDL 491

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
           +         +     A++         AR+
Sbjct: 492 ARRAALAVDNARLYYEAQRSREQVERQAARL 522



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/133 (12%), Positives = 38/133 (28%), Gaps = 8/133 (6%)

Query: 319 ENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
           E      ++  P    +    G +  AN     L  Y   + +     +  LL       
Sbjct: 17  EKGFAALLESAPDAIVIVDQDGRIVLANSQTEHLFGYTREELLGQP--VEMLLPERFREA 74

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENS-LAMTFIPFEKANQFPENMPQNGIEPE 436
           + A +   +       +     L   + +       ++  P     + P+ M    I  +
Sbjct: 75  HRAHRAAYVKAPRTRPMGIGLELFGRRRDGSEFPTEISLSPV----ETPQGMLVTSIIRD 130

Query: 437 DVDTRINKRKMEI 449
             D ++ + +   
Sbjct: 131 VTDRKVAEAERAR 143


>gi|29346674|ref|NP_810177.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|253568722|ref|ZP_04846133.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
 gi|29338571|gb|AAO76371.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|251842795|gb|EES70875.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
          Length = 1039

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 77/337 (22%), Positives = 146/337 (43%), Gaps = 24/337 (7%)

Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKL 538
             +    P      K F           +      ++     +  E  ++        ++
Sbjct: 573 AEEQLAVPDYHYFSKIFK-----EDRKRVEQAYQNLIDGHSEKVKEEYRVVSTQKGFHRI 627

Query: 539 LSLRI-IIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
             +      +    +        +   I+E K+ + +L +AK  AE+ +  KS FLA +S
Sbjct: 628 EWVEAQAAVETRDENGKPLTLVGSSLVITERKKMEMELINAKNRAEESNRLKSAFLANMS 687

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HEIRTPL AI+GFS ++ +            EY + I+ +  L+L +++D+LD+SKIE+G
Sbjct: 688 HEIRTPLNAIVGFSGILASTEEEEEK----QEYVSIIENNNTLLLQLISDILDLSKIEAG 743

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713
            ++LH+  V +++ + +  ++ QL      + +             +   + Q+ +N+++
Sbjct: 744 TLDLHYSNVEINDLMKDLENMCQLKLKSDAVKLEFVAPEEPCFAHIEKNRLSQLIINLVT 803

Query: 714 NAIHFTPSGGQIIISTTH-TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           NAI FT  G    I   +   N E+   V DTG G+   + +     F ++ +      +
Sbjct: 804 NAIKFTIQGS---IRFGYKRQNNELYFYVADTGCGIPQDKQKSIFGRFVKLNSF----AQ 856

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GTGLGL + + +V+   GK  + S    G+      P
Sbjct: 857 GTGLGLSICQTLVEHMGGKIGVESEEGNGSTFWFTLP 893


>gi|39935041|ref|NP_947317.1| periplasmic sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris CGA009]
 gi|39648892|emb|CAE27413.1| sensor histidine kinase [Rhodopseudomonas palustris CGA009]
          Length = 532

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 103/249 (41%), Positives = 156/249 (62%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I+E +Q K     A+  AE  +  KS FLA++SHE+RTPL AI+GFSEV+K++ FG    
Sbjct: 241 IAELEQSKAISDEARHRAEAANVAKSRFLAQMSHELRTPLNAILGFSEVMKSEIFGAHAV 300

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
           P Y +Y+  I  SG  +L+++N++LD+S+IE+G+  L+ E +SL   V++   L++L A 
Sbjct: 301 PAYKDYSADIHNSGVHLLNLINEILDLSRIEAGRYELNEEAISLVHVVTDCHHLLKLRAT 360

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
            + I I   F   +PRI  D R+V+Q+ LN+LSNAI FTP GG+I +    T++    L 
Sbjct: 361 SRGITIHEVFEQGMPRIWGDERAVRQVVLNLLSNAIKFTPQGGEIWLKAGWTASGGQYLS 420

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V+DTG G+   E+   +  FGQ  NS +   +G GLGLP+AK+++D + G F + S    
Sbjct: 421 VKDTGSGIPEEEIPIVLASFGQGSNSIKSAEQGAGLGLPIAKSLIDMHGGTFTLKSKLRI 480

Query: 801 GTLIEIIFP 809
           GT + + FP
Sbjct: 481 GTEVIVTFP 489


>gi|255012920|ref|ZP_05285046.1| two-component hybrid sensor kinase/response regulator [Bacteroides
           sp. 2_1_7]
          Length = 1045

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 95/516 (18%), Positives = 190/516 (36%), Gaps = 49/516 (9%)

Query: 317 EGENLTPETVDKCPIPFFVYSHGN--------LFYANPSFLLLTKYKSVDDIEIAGGLST 368
              +   +  +  P+P+               +   N +F      K     +    ++ 
Sbjct: 409 RLLSRYRDLFNNMPLPYIRQRLIREGTQIDVQVLDVNHAFEEKIAPKDFVVNKHGKEIAN 468

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
           L+          +  V                            +  +P  + N      
Sbjct: 469 LIGGSY---PLLLSAVPTVLESGKSFTCEYYFEPT----GLYYTIIIMPTSEENV----- 516

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNR-------- 479
             +    +  D    +  ++    +L   LEA        N  EG I+  ++        
Sbjct: 517 -VDAFFIDITDIHNFQTHLKAMNHKLAMALEAADLLPWRYNLAEGKIIYESKVHPGDNIE 575

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST--KEEK 537
                      ++  K +   +  +  + +     ++ +  +++  ++  L      E++
Sbjct: 576 TAE----VHTHEVSLKEYFSKIHPSFRACVEKAFDDLCNGKIKKVRKEYCLERLIPGEDR 631

Query: 538 LLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
                I +     +S        +   I+E KQ ++ L  A+  AE+ +  KS FLA +S
Sbjct: 632 HEWEEIQVMAEYDASGKPKALIGSTISITERKQLEHDLRMARDKAEESNKLKSAFLANMS 691

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HEIRTPL AI+GFS ++ +            E+A+ I+ + +L+L ++ND+LD+SKIE+G
Sbjct: 692 HEIRTPLNAIVGFSNILASTD----DLEDKKEFADIIENNNSLLLQLINDILDLSKIEAG 747

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713
            +   ++ V ++  + +      L      + I          I  D   + Q+ +N+L+
Sbjct: 748 TLEFTYDYVDINAVLRDLEQSAHLKNKNPDVQISFKDYLEPCVIYTDRNRLSQLMINLLN 807

Query: 714 NAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
           NA+ FT +G  I+       +  +   V DTG G+   + +     F ++        +G
Sbjct: 808 NAMKFTQAGS-ILFGYKLKDDNTLWFYVEDTGCGIPENKRKDIFGRFVKLNTF----AQG 862

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           TGLGL + + +V    G   + S   KG+      P
Sbjct: 863 TGLGLSICEMIVTQMKGTIGVDSVEGKGSRFWFTLP 898


>gi|124268770|ref|YP_001022774.1| sensor histidine kinase/response regulator [Methylibium
           petroleiphilum PM1]
 gi|124261545|gb|ABM96539.1| sensor histidine kinase/response regulator [Methylibium
           petroleiphilum PM1]
          Length = 1153

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 70/259 (27%), Positives = 134/259 (51%), Gaps = 6/259 (2%)

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            +I   ++    L  AK++AE  +  K+ ++A ++HE+RTPL +I+G+++++        
Sbjct: 675 REIDAHQRTDAALQAAKEVAESANQAKTRYVAGMTHELRTPLNSILGYAQILLKDGVLSA 734

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
                 E  + I RSG  ++ +++ LLD+++IE+G++ L    + L   + E + +VQ  
Sbjct: 735 AP---REAVHTIRRSGEHLMGLIDGLLDLARIEAGRLRLEPAALPLPAFLDELVRMVQPQ 791

Query: 679 ANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737
           A  KR+    + +  +P  + AD + ++QI +N+LSNA+ FT  G  + +       E V
Sbjct: 792 AQAKRLAFVYTHSGRMPAWVHADAKRLRQILINLLSNAVRFTDEG-TVTLHVDCR-REVV 849

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
              V DTG+G+   + ++   PF +    ++    GTGLGL +   +     G+  + S 
Sbjct: 850 RFDVVDTGIGIAPQDQQRIFMPFERGAAGRRRGEPGTGLGLTITALLTSLMGGELGLVSA 909

Query: 798 PAKGTLIEIIFPLYDTSHP 816
           P +G+   +   L + S P
Sbjct: 910 PGRGSTFSVRLYLREVSDP 928


>gi|146301663|ref|YP_001196254.1| GAF sensor hybrid histidine kinase [Flavobacterium johnsoniae
           UW101]
 gi|146156081|gb|ABQ06935.1| GAF sensor hybrid histidine kinase [Flavobacterium johnsoniae
           UW101]
          Length = 662

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 74/244 (30%), Positives = 127/244 (52%), Gaps = 11/244 (4%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L   KKIAE+    K  FLA +SHEIRTPL AIIGF++++   +     N    +Y N 
Sbjct: 168 QLDAQKKIAERAVLAKDSFLANMSHEIRTPLNAIIGFTDLLAQTKL----NAVQRDYINS 223

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           +  +G  +L IVND+LD+SK+ESG + +   P +L   +    +L+++    K +     
Sbjct: 224 VQIAGENLLLIVNDILDLSKMESGNLTIEAVPFNLKNTLKHVYNLLKIKVP-KEVEFNLF 282

Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDT 744
              ++P  ++ D   + QI +N++ NA+ FT  G ++ +S       E    +   V+DT
Sbjct: 283 LDADMPEMVIGDEGRLNQILVNLIGNALKFTHEG-EVTVSVKMIEETETHYSLKFSVKDT 341

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G+   +L+   + F Q  +S   +  GTGLGL + K +++    +  + S   KG+  
Sbjct: 342 GIGIPPKKLKTIFERFTQAEDSTTRKFGGTGLGLNIVKQLIELQNAEINVKSEQNKGSEF 401

Query: 805 EIIF 808
             + 
Sbjct: 402 FFVI 405


>gi|196228521|ref|ZP_03127388.1| multi-sensor signal transduction histidine kinase [Chthoniobacter
           flavus Ellin428]
 gi|196227924|gb|EDY22427.1| multi-sensor signal transduction histidine kinase [Chthoniobacter
           flavus Ellin428]
          Length = 609

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 89/559 (15%), Positives = 184/559 (32%), Gaps = 34/559 (6%)

Query: 279 NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE---TVDKCPIPFFV 335
            L + T++                          A     EN       T D       +
Sbjct: 57  ELQERTQRHLMEMESGRRGFIITGDETYLRGFEEAQAQIIENFNALKTYTADTPQQTVKL 116

Query: 336 YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIA 395
                L   N  F            +      T+    +          +L   DR    
Sbjct: 117 DRLLTLIQRN--FAEQQTEIETRRTQGFAASLTIFAKGESDQTTQDIRKILADFDREQRQ 174

Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
             A    +      +  +T +           +    I  +       +  +  E   L 
Sbjct: 175 LLAERAALTRYVGRATTLTIVAGSVFTFIALLVACFLILRDVAARHRAEEALAAEHHLLL 234

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFG-YPVEDILRKPFTVFLEQNTPSVMNHYLT 514
           SI++   D + + + EG  +  N A  +++G         +    +         +    
Sbjct: 235 SIIDTIPDHVYVKDVEGRFILDNVAHREMYGPKTEGTTTGRTVFDYYSAAEAERFDEDDH 294

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNK 570
            ++         +       +   L ++     L  +            DI++ K  + +
Sbjct: 295 RVIETGEGIFNHEEARLQE-DGGELWIQTTRVPLRDTDGSVIGLVGISADITDRKISEVQ 353

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           L       E  ++   +F +  SH+++ PL  I  FS+ +   + G   + + ++Y + +
Sbjct: 354 LLRFAAQLENSNAELQNFASVASHDLQEPLRKIQAFSDRL-RVKCGKTLSAQGLDYLDRM 412

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
             +   +  ++ DLL +S+I S  +   FE   L+E V   +S +++   ++   I    
Sbjct: 413 QNAAQRMQVLIQDLLKLSRITSRALP--FEACDLNEVVRTVLSDLEITIEQQHAKIEV-- 468

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII-------STTHTSNEEVIL---- 739
             ++P I AD   ++Q+  N++SNA+ F   G +  +            S  EV +    
Sbjct: 469 -GDLPTIEADAVQMRQLFQNLISNALKFQRPGDRPEVVIEGRIYEVKERSAGEVAIPGQR 527

Query: 740 ----RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
                VRD G+G      ++    F ++ +  +   EGTG+GL + + + D + G     
Sbjct: 528 ICKIVVRDNGIGFDPKFGDQIFVVFQRLHS--RSEYEGTGIGLAVCRKITDRHGGSIVAK 585

Query: 796 STPAKGTLIEIIFPLYDTS 814
           S   +G    +  P+   S
Sbjct: 586 SAEGQGAAFIVTLPVTQPS 604



 Score = 46.9 bits (110), Expect = 0.015,   Method: Composition-based stats.
 Identities = 21/247 (8%), Positives = 63/247 (25%), Gaps = 13/247 (5%)

Query: 90  DAHGYLKEISEELPKTIGNYAF-KMIGMRLCD---VSDILHIDPNNHIGDLLKRQ-NTWY 144
           D  G     +    +  G        G  + D    ++    D ++H   +++     + 
Sbjct: 248 DVEGRFILDNVAHREMYGPKTEGTTTGRTVFDYYSAAEAERFDEDDH--RVIETGEGIFN 305

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR-ALGKRLDKK 203
            +      +G    + I    +P+   +    G    GI             L +   + 
Sbjct: 306 HEEARLQEDGG--ELWIQTTRVPLRDTDGSVIGL--VGISADITDRKISEVQLLRFAAQL 361

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
            +   E++   S    +  +   +              +L+       D ++     +  
Sbjct: 362 ENSNAELQNFASVASHDLQEPLRKIQAFSDRLRVKCGKTLSAQGLDYLDRMQNAAQRMQV 421

Query: 264 SEESSLP-EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
             +  L   +     +        +   T+ ++ + + E    +         +      
Sbjct: 422 LIQDLLKLSRITSRALPFEACDLNEVVRTVLSDLEITIEQQHAKIEVGDLPTIEADAVQM 481

Query: 323 PETVDKC 329
            +     
Sbjct: 482 RQLFQNL 488


>gi|2353767|gb|AAB94870.1| DMSO/TMAO-sensor kinase [Rhodobacter sphaeroides]
          Length = 815

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 120/545 (22%), Positives = 204/545 (37%), Gaps = 35/545 (6%)

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
            E          +     Y  + +    E     +     S S            +V   
Sbjct: 16  AELAPVGVSAAERSALADYLESSETLLTERVVAYASTR--SYSHLVSTLPEAWRSSVQGL 73

Query: 330 PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389
                +        A   +             I  GL   L    +S    I     YR 
Sbjct: 74  TDSVILMLDHQSAEAAIDYDADIGTDPSTAYGIEAGLRHRL--RGISLETFIGAFKGYRD 131

Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449
               + A AR+          L   F    +         + G   +        R +  
Sbjct: 132 VYLNVTAEARVPAAMREGWLRLLRGFFDRAEIGICAHWSGELGTL-DHDQLLSVNRALVN 190

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
           E  +  +I E+ ++ + +++  G I + N A ++LF          P +V+         
Sbjct: 191 EKNKYLTIFESMNNPVLLVDDGGRIENMNFAAARLFLQDA-----LPGSVYYGPEANLRF 245

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWK 565
                  L     +      L    E       I  +++   S       +T HD++E +
Sbjct: 246 ADLAGFDLEAVKLRGEAGDVLTCIGER---WYSITAQEMLDVSRKFVGIVVTFHDVTEAR 302

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           +        ++ AE  +  K+DFLA +SHEIRTP+ +I G +E++K          R   
Sbjct: 303 RA-------REQAEALARAKTDFLATMSHEIRTPIHSIGGVTELLKQSELAS----RDRG 351

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK--- 682
           Y + I+RS  ++  IV+D+LD ++IESG + L     S+D+ + +   ++Q     K   
Sbjct: 352 YVDAIERSTEVLASIVSDVLDYARIESGLVELEQVDFSIDQILDDVARMMQPLVRRKPQL 411

Query: 683 RILI-RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
           RI+I RT       ++ A   S++QI +N+ SNA+ FTP G  +I +            V
Sbjct: 412 RIVIERTDLPAGPGKMQA---SLRQILINLTSNAVKFTPEGTVVIGAERLAGGHRFRFTV 468

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            DTG G+   +LE+  KP+ Q  +S   R  GTGLGL + + +     G+  + STP  G
Sbjct: 469 SDTGPGIAAEKLEEIFKPYIQSDSSISRRHGGTGLGLAICRRLAGHLGGRLDVRSTPGFG 528

Query: 802 TLIEI 806
           +   +
Sbjct: 529 SRFTL 533


>gi|197118451|ref|YP_002138878.1| GAF/PAS/PAC domain-containing heme-binding site [Geobacter
            bemidjiensis Bem]
 gi|197087811|gb|ACH39082.1| sensor histidine kinase response regulator, PAS, PAS, GAF, PAS and
            PAC domain-containing, putative heme-binding site
            [Geobacter bemidjiensis Bem]
          Length = 1184

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 107/795 (13%), Positives = 236/795 (29%), Gaps = 89/795 (11%)

Query: 87   WN--IDAHGYLKEISEELPKTIGNYAFKMIGMR--LCDVSDILHIDPNNHIGDLLKRQNT 142
            W   ID    ++ +S       G    + +        +      +   +  +     + 
Sbjct: 263  WEYWIDQERRMRYVSPSCFDITGYAPQEFMEDPELAQRLVYPEDREAFANHLEQGAAGSP 322

Query: 143  WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
                      + +     I     P++S N  F G R                      +
Sbjct: 323  PDSIEFRIATK-SGAVRWIHHDCRPVFS-NGNFLGRRVSN--RDVTDRKIVEQELAIRAE 378

Query: 203  KFSHLHEIK------KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD--DVL 254
              + + +             V    +                 + S        +   ++
Sbjct: 379  LLNCVSDSVFVVSLGGTILEVNDAAWRTRGFSREEMLAMNICDLVSQRYAKLFPEHLRLV 438

Query: 255  KTEKYPLLTSEESSLPEQEDFHTINL---NQYTKKQYFGTLQNNSKESFEYLSHRNHPS- 310
                   L SE      +     I+        +     ++++ ++        R     
Sbjct: 439  AQHSEGFLESEHRLKDGRVISVEIDSRIIEYRGESAVLSSVRDVTERKETVQILRRSERF 498

Query: 311  -------------LSAYFDEGENLTPETVDKC--PIPF--FVYSHGNLFYANPSFLLLTK 353
                          S      + L    ++    P     ++   G+L  A  S      
Sbjct: 499  NVSLNRISQAFLTSSEEQQMYQELLVALLEVMDSPYGVVGYLDDAGDLVLAAVSVDRGGP 558

Query: 354  YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR---LHTIQWNRENS 410
              +   I  A    TL      S             +            +  + +  + S
Sbjct: 559  KAAHIVIPEARWGETLWGLTLRSGEARYSNQP---QNPPAWHFHVERLLMAPLVYQGKPS 615

Query: 411  LAMTFIPFEKANQ-------FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
              +                          +    +D +     +     +L  I +    
Sbjct: 616  ALLMVANRPGDYTDEDLQMLQGIGAQIAPVLNARLDQQQAVAALRENESKLQIIFDVIQA 675

Query: 464  GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
            G+   +  G ++  N+ ++++FG P+E+++   +   +      +       +LS +L  
Sbjct: 676  GVIQADSTGSVIYANQRMAEMFGMPMEELIGSDYCSHVSPEQRQLAGSSFAMLLSGELES 735

Query: 524  TLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKI-- 577
                      K+  L    +  ++L  S         T+ D+++ K  + K   +++   
Sbjct: 736  A-HYERHYRRKDGTLFWGYLTGRRLVASDGKPAELVATITDMTDLKSAEEKRHRSEQQML 794

Query: 578  AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
              ++          ++H+    L AI+G + +   +        +   +   I+++    
Sbjct: 795  HVQKLESLGVLAGGIAHDFNNILLAIMGNTSLALQRVDRGSPLEQ---HLLQIEKASEKA 851

Query: 638  LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697
             D+   +L  S    GK     E + L+  V E  S++++  ++K + +R   A  +P I
Sbjct: 852  ADLARQMLAYS----GKGRFVLEALDLNRLVREMTSMLEVSLSKKAV-LRFHLAEELPGI 906

Query: 698  LADLRSVKQIALNILSNAIHF-TPSGGQIIISTT-----------------HTSNEEVIL 739
            +AD   ++QI +N+  NA        G+I I+T                        V L
Sbjct: 907  IADPTQIRQIIMNLAINASEAIGEKSGEITIATGSLICDSHYLAENWLDVPLHEGRYVYL 966

Query: 740  RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
             V D G GMT   L++  +PF         +  G GLG+     +V  + G   ++S P 
Sbjct: 967  EVTDNGCGMTKETLDRIFEPFFTT------KFTGRGLGMAAILGIVRGHKGVIKVYSEPD 1020

Query: 800  KGTLIEIIFPLYDTS 814
             G+  +I+ P  + +
Sbjct: 1021 TGSSFKILLPATEAA 1035



 Score = 75.4 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 54/515 (10%), Positives = 131/515 (25%), Gaps = 76/515 (14%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + +   G + E+++   +T G    +M+ M +CD+    +         L+ + +  + 
Sbjct: 387 VFVVSLGGTILEVNDAAWRTRGFSREEMLAMNICDLVSQRYAKLFPEHLRLVAQHSEGFL 446

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           ++     +G  + V ID   +     +   S       V       +   + +R ++   
Sbjct: 447 ESEHRLKDGRVISVEIDSRIIEYRGESAVLS------SVRDVTERKETVQILRRSERFNV 500

Query: 206 HLHEIKKGHSSVEKE--------KYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD----- 252
            L+ I +   +  +E           +    SP   +   +    L       D      
Sbjct: 501 SLNRISQAFLTSSEEQQMYQELLVALLEVMDSPYGVVGYLDDAGDLVLAAVSVDRGGPKA 560

Query: 253 ---VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN-------------- 295
              V+   ++       +    +  +     N      +   L                 
Sbjct: 561 AHIVIPEARWGETLWGLTLRSGEARYSNQPQNPPAWHFHVERLLMAPLVYQGKPSALLMV 620

Query: 296 -------------------SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-V 335
                              ++ +    +  +     A   E E+      D         
Sbjct: 621 ANRPGDYTDEDLQMLQGIGAQIAPVLNARLDQQQAVAALRENESKLQIIFDVIQAGVIQA 680

Query: 336 YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIA 395
            S G++ YAN     +      + I           +P+          ML   +     
Sbjct: 681 DSTGSVIYANQRMAEMFGMPMEELIGSDYCS---HVSPEQRQLAGSSFAMLLSGELESAH 737

Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
                   +                     +         +  D +  + K      Q+ 
Sbjct: 738 YERH---YRRKDGTLFWGYLTGRRLVASDGKPAELVATITDMTDLKSAEEKRHRSEQQML 794

Query: 456 SI--LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
            +  LE+   G+      GI    N  +  + G            +        +  H L
Sbjct: 795 HVQKLESL--GVL---AGGIAHDFNNILLAIMG-------NTSLALQRVDRGSPLEQHLL 842

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
               + +    L +  L  + + + +   + + +L
Sbjct: 843 QIEKASEKAADLARQMLAYSGKGRFVLEALDLNRL 877



 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/156 (8%), Positives = 52/156 (33%), Gaps = 3/156 (1%)

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
            +   GI          + ++     +  ++ + T D    I++E  +   + +   + G
Sbjct: 226 AVGGGGILVSARRRHDYEEELRAGEEKFRTVCDWTQDWEYWIDQERRMRYVSPSCFDITG 285

Query: 487 YPVEDILRKP--FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
           Y  ++ +  P      +         ++L +  +     ++E      +   + +     
Sbjct: 286 YAPQEFMEDPELAQRLVYPEDREAFANHLEQGAAGSPPDSIEFRIATKSGAVRWIHHDCR 345

Query: 545 IKKLPFS-SCYSLTMHDISEWKQEKNKLSHAKKIAE 579
                 +     ++  D+++ K  + +L+   ++  
Sbjct: 346 PVFSNGNFLGRRVSNRDVTDRKIVEQELAIRAELLN 381


>gi|293373302|ref|ZP_06619660.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f]
 gi|292631698|gb|EFF50318.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f]
          Length = 502

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 97/510 (19%), Positives = 175/510 (34%), Gaps = 49/510 (9%)

Query: 324 ETVDKCPIPFFVYS---HGNLFYANPSFLLLTKYKSVDDIEIAG----------GLSTLL 370
           + +D  P P FV         +Y N      +   S + I                  + 
Sbjct: 17  DILDNLPFPIFVKDITNDFRYYYWNKESAAQSGISSEEAIGHTDYEIYGEERGEKYRHID 76

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
                +     K       D       A    I W  E    +                 
Sbjct: 77  KELIQAGKVYRKEEKYTTPDGITHDTIAVKSIISWEGEKKWLLATR-------------- 122

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLC-------SILEATSDGIAIINREGIILSTNRAVSK 483
                +    +  +R++     +L          L++   G+  I++   +         
Sbjct: 123 ----WDITQLKNYERELVAAKEELEKALKKQKLALKSIDFGLIYIDKNYRVQWEETRQIA 178

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
                   I  K                   + +                 E     +  
Sbjct: 179 SLVKGRRYIPGKICYQTSALRNEPCGQCAFKKAIEQGKIIRHTIRVDDVDFEVTATPVFG 238

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
             K+            +I+E  +    L  AK+ AE+ +  KS FLA +SHEIRTPL AI
Sbjct: 239 DEKETEIIGGLLR-FENITEKLKMDKMLQEAKEKAEESNRLKSAFLANMSHEIRTPLNAI 297

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +GFSE++              E+   I  +  L+L +++D+LD+SKIE+G M   F    
Sbjct: 298 VGFSEMVCQTEEEEE----RKEFVKIISSNNILLLQLIDDILDLSKIEAGTMEFTFAQTD 353

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
           ++E +      +Q   +   I I  +   +   +  D   + Q+ +N  +NA+ FTP G 
Sbjct: 354 INELMEGICRQMQEKNSSPDIQILFTEKADQCMMYTDRIRLSQVIINFTNNALKFTPKGS 413

Query: 724 QIIISTTHTS-NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
            I +        +E+   V+DTG+G+   +++K  + F ++ +      +GTGLGL + +
Sbjct: 414 -IEMGYRIEEAKDEIYFYVKDTGIGIPADKIDKVFERFVKLNSFI----KGTGLGLAICR 468

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
            +V+   G   + S   +G+      P  +
Sbjct: 469 VIVERLGGVIGVESKEGEGSRFWFRIPRSE 498


>gi|160943149|ref|ZP_02090386.1| hypothetical protein FAEPRAM212_00634 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445618|gb|EDP22621.1| hypothetical protein FAEPRAM212_00634 [Faecalibacterium prausnitzii
           M21/2]
          Length = 752

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 87/290 (30%), Positives = 153/290 (52%), Gaps = 10/290 (3%)

Query: 524 TLEKITLGSTKEEKLLSLRI-IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES 582
            +    L   K+++ L        +L   +      +D  E ++ ++  + A + AE+ S
Sbjct: 311 VIAGWFLLREKQQRELQAEKKTNLRLEQYNVQLTQAND--EMRRAQDAAAEALQSAERAS 368

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
             K+DFL+ +SH+IRTP+ AIIG + ++KN+   P    +  E+   ++ SG L+L I+N
Sbjct: 369 KAKTDFLSNMSHDIRTPMNAIIGITALMKNELHEP---EKLAEHLGKLESSGQLLLGIIN 425

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702
           ++LD+S+IESGK  LH E ++L + +S+  S+++  A ++      S       +LAD  
Sbjct: 426 NILDMSRIESGKTTLHVEKMNLPQQISQLDSIIRQQAGQRSQSFTVSTNLQHENVLADPN 485

Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMK 758
            + Q+ +NILSNA+ +TP+GG I +        E        V+D G+GM+    +    
Sbjct: 486 RLNQVLMNILSNAVKYTPTGGHIRLEVEELPRNEHYARYRFVVQDDGIGMSADYQKTLFD 545

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           PF +   S   + +GTGLG+ + K+++D   G   + S   KGT  E++ 
Sbjct: 546 PFTREERSGTNKVQGTGLGMAITKSVIDLMGGSISVESATGKGTRFEVVL 595


>gi|238792676|ref|ZP_04636308.1| Histidine kinase [Yersinia intermedia ATCC 29909]
 gi|238728032|gb|EEQ19554.1| Histidine kinase [Yersinia intermedia ATCC 29909]
          Length = 1254

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 89/378 (23%), Positives = 173/378 (45%), Gaps = 16/378 (4%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           R   + +   ++Q  S++ A    + I    G +   N   +      + D+L +     
Sbjct: 560 RRQAKLLHARLLQQESVINALPFAVFIRTTTGELAVYNNHFAAAHHDKLHDLLNQNVEQA 619

Query: 501 LEQNTPSVMNH---YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-YSL 556
               T  +      Y   +L     Q ++   L       L  + + I  L  +      
Sbjct: 620 NWPMTSPLDREIDKYCRYVLKDRKPQMVD---LSLEINGDLRDIFLWIIPLDNAERSLLG 676

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
              DIS+ K  + +L  A+  AE  +  KS FLA +SHE+RTP+ AI+G  E ++ +   
Sbjct: 677 GWLDISQRKTVERELEAARLEAESANRTKSTFLATISHELRTPMYAIMGLLE-LEIRSAQ 735

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
           P+           + +S   ++ +++D++D +KIE+G++++H   V   + +   +++ Q
Sbjct: 736 PVD----KNTLVTVSKSAQSLMLLLDDIIDSAKIEAGQLSVHPAAVDFRQEMERMLTIYQ 791

Query: 677 LYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSN 734
             A+E+ +       + IP + +AD+  V+Q+  N+L NA+ FT  GG  + ++   T +
Sbjct: 792 PIADERGLRFSGWLDDQIPHLLMADMLRVRQVMGNLLGNALKFTEQGGVSVDVTWEPTDD 851

Query: 735 EEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
           ++ +  + + DTG+G++        +PF Q    +  R  G+GLGL +   ++    G+ 
Sbjct: 852 KQGVMNIDITDTGIGISPAAQATLFQPFSQANEGKSPRFGGSGLGLWICHQLIHKMGGQV 911

Query: 793 YIFSTPAKGTLIEIIFPL 810
            + S   KGT + I  PL
Sbjct: 912 AMESQLGKGTSLFITLPL 929


>gi|318042212|ref|ZP_07974168.1| multi-sensor signal transduction histidine kinase [Synechococcus
           sp. CB0101]
          Length = 665

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 73/394 (18%), Positives = 161/394 (40%), Gaps = 41/394 (10%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            ++    ++  S++   +DG  +++ EG ++  N    +LF +    +        L   
Sbjct: 271 EELTAAQVKQQSLIATMADGALLLDAEGRVVLVNPTARRLFRWEGRKLEGALVGEELPDV 330

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEE-KLLSLRIIIKKLPFSSCYSLTMHDISE 563
               +   L  +LS +   +  +   G      +++   +           ++T+ D++ 
Sbjct: 331 LALELQTPLETLLSGERDSSDVRCNFGEPPRTLRIVLQSVRDASGESLKGIAVTVQDLTR 390

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
                           + ++ +S F++ VSHE+RTPL  I  + E + +     L     
Sbjct: 391 --------------EVELNAAQSRFISNVSHELRTPLFNIKSYVETLHD-LGDQLSEEDR 435

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            E+    +   + +  +VND+LD+S++ES +     EPV L  A+ + +   +L A +K 
Sbjct: 436 KEFLAIANDETDRLTRLVNDVLDLSRLESDR-TWSMEPVELRPAMEQTLRNYRLNAQDKG 494

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-------- 735
           + +       +PR+  +   + Q+  N++ N + FT SGG++++      +         
Sbjct: 495 VELSLEVDEQLPRVRGNWDLLLQVFDNLVGNGLKFTASGGRLMLRAYPWPDTCLIDPSTE 554

Query: 736 ---------------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
                           + + + DTG G++  + E+  + F ++ N+      GTGLGL +
Sbjct: 555 ATGDSPTCALTAPLPRLRVEIADTGSGISREDQERIFERFYRVENAVHTEV-GTGLGLSI 613

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
            + +++ +  +  + S    GT      PL    
Sbjct: 614 VRGILEKHGTQVRMVSELGVGTTFWFDLPLEQAD 647


>gi|317159482|ref|XP_001827480.2| two-component osmosensing histidine kinase (Bos1) [Aspergillus
           oryzae RIB40]
          Length = 1141

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 77/254 (30%), Positives = 133/254 (52%), Gaps = 11/254 (4%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           IS  +    + + A++ AE  +  KS+FLA +SHEIRTP+  IIG +++  +    P   
Sbjct: 606 ISNLRDSIQRNTAAREAAELANQSKSEFLANMSHEIRTPMNGIIGMTQLALDTDDLPPPT 665

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
               E  N +   GN +L I++D+LDISKIE+  M +   P SL + V +A+ ++ + A+
Sbjct: 666 ---REMLNVVHNLGNSLLVIIDDILDISKIEANHMKIESVPFSLGQTVFKALKILAVEAS 722

Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIST-----THTSN 734
           E+ + +     N++   ++ D   ++QI LN++ NAI FT +G QI ++          +
Sbjct: 723 ERSLHLTYHINNSVRDCVIGDAFRLRQIILNLIGNAIKFTETG-QIQLTIKEAVPRCHPD 781

Query: 735 EEV-ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
           + +    V DTG+G+   +L+     F Q   S   +  GTGLGL ++K +V+   G  +
Sbjct: 782 KYLLEFSVSDTGIGIDKSKLDLIFDKFQQADGSMTRKFGGTGLGLSISKKLVNLMGGDIW 841

Query: 794 IFSTPAKGTLIEII 807
           + S    G+     
Sbjct: 842 VTSAVGVGSTFHFT 855


>gi|316935768|ref|YP_004110750.1| PAS/PAC sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris DX-1]
 gi|315603482|gb|ADU46017.1| PAS/PAC sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris DX-1]
          Length = 508

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 82/527 (15%), Positives = 191/527 (36%), Gaps = 31/527 (5%)

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIA 363
                  S      +    + +D   +  + +         + +   L    +   +   
Sbjct: 1   MTEPAPPSTELLARDRRLQQGIDGYGVGTWELNLATRELACSATARKLLGVPADAPLTYD 60

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
             +S  L  P   +  A+  +         I     ++ +      S  +          
Sbjct: 61  TFIS--LVDPDDREQIAL-ALQQSIEHGDKIDV---MYRVAEKDRPSHWL--RARGGIVH 112

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
                   GI  +    ++ ++++ ++  QL SIL+   D + +I+  GI+   +RA  +
Sbjct: 113 EDGASYLCGIVLDIDQQKVLEQELRLQQGQLRSILDTVPDAMILIDGRGIMRFFSRAAER 172

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT--LEKITLGSTKEEKLLSL 541
           +FG    + + +  +V + +   +  + Y+        R    + +I  G  K+     +
Sbjct: 173 MFGMSEREAIGQNISVLMPRPDATRHDQYIDRYNVSGERHIIGIGRIVTGQRKDGSTFPI 232

Query: 542 RIIIKKLP--FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS--HKSDFLARVSHEIR 597
            + I ++       ++  + D++E++Q + +L   +      S      +  + ++HE+ 
Sbjct: 233 HLSIGEMESGGERYFTGFIRDLTEYQQTQARLHELQAELVHVSRLTAMGEMASALAHELN 292

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYI--EYANYIDRSGNLVLDIVNDLLDI-SKIESGK 654
            PL+AI  + +  +    G                         I+  L D  ++ ES  
Sbjct: 293 QPLSAISNYMKGSRRLLAGSTDPNTVKIESAMERAAEQALRAGQIIRRLRDFVARGES-- 350

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714
                   SL + + EA +L    A E+ +++R         +L D   ++Q+ +N+  N
Sbjct: 351 ---EKRVESLAKLIEEAGALGLTGAREQGVVLRFDLDPAHDLVLVDRVQIQQVLVNLFRN 407

Query: 715 AIHFTPSGGQIIIST--THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           A+    +  +  +S      +++ V + V DTG G+      K  + F     +      
Sbjct: 408 ALEAMANSAKKELSAANARVADDMVEVTVSDTGSGLPEQVKAKLFQTFFTTKET------ 461

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819
           G G+GL +++++++A+ G+ +  +  A G       PL       D 
Sbjct: 462 GMGVGLSISRSIIEAHGGRMWAETNSAGGATFRFTLPLAPVGDMTDA 508



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/211 (7%), Positives = 47/211 (22%), Gaps = 8/211 (3%)

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE--YLS 304
               D                 +         +   +  +   G +  +         L 
Sbjct: 66  VDPDDREQIALALQQSIEHGDKIDVMYRVAEKDRPSHWLRARGGIVHEDGASYLCGIVLD 125

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIA 363
                 L       +      +D  P     +   G + + + +   +      + I   
Sbjct: 126 IDQQKVLEQELRLQQGQLRSILDTVPDAMILIDGRGIMRFFSRAAERMFGMSEREAIGQN 185

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
             +S L+  P  + ++          +R  I     +   + +                +
Sbjct: 186 --ISVLMPRPDATRHDQYIDRYNVSGERHIIGIGRIVTGQRKDGSTF---PIHLSIGEME 240

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
                   G   +  + +  + ++     +L
Sbjct: 241 SGGERYFTGFIRDLTEYQQTQARLHELQAEL 271



 Score = 43.1 bits (100), Expect = 0.19,   Method: Composition-based stats.
 Identities = 41/356 (11%), Positives = 95/356 (26%), Gaps = 13/356 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G ++  S    +  G    + IG  +  +        ++   D    +    G+  
Sbjct: 157 IDGRGIMRFFSRAAERMFGMSEREAIGQNISVLMPRPDATRHDQYID----RYNVSGERH 212

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFS--GFRGF-GIVHVNRVDNDPRALGKRLDKKFS 205
           +  I         D +  PI+    E    G R F G +         +A    L  +  
Sbjct: 213 IIGIGRIVTGQRKDGSTFPIHLSIGEMESGGERYFTGFIRDLTEYQQTQARLHELQAELV 272

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
           H+  +           +++    S   +    ++         +   +    +     + 
Sbjct: 273 HVSRLTAMGEMASALAHELNQPLSAISNYMKGSRRLLAGSTDPNTVKIESAMERAAEQAL 332

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
             +               ++K+     +   +     L+      +   FD         
Sbjct: 333 -RAGQIIRRLRDFVARGESEKRVESLAKLIEEAGALGLTGAREQGVVLRFDLDPAHDLVL 391

Query: 326 VDKC---PIPFFVYSHGNLFYANPSFLLLTKYKS--VDDIEIAGGLSTLLDAPKLSDNNA 380
           VD+     +   ++ +     AN +   L+   +   DD+       T    P+      
Sbjct: 392 VDRVQIQQVLVNLFRNALEAMANSAKKELSAANARVADDMVEVTVSDTGSGLPEQVKAKL 451

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
            +     +     +  S     I+ +     A T        +F   +   G   +
Sbjct: 452 FQTFFTTKETGMGVGLSISRSIIEAHGGRMWAETNSAGGATFRFTLPLAPVGDMTD 507


>gi|225180886|ref|ZP_03734334.1| integral membrane sensor signal transduction histidine kinase
           [Dethiobacter alkaliphilus AHT 1]
 gi|225168367|gb|EEG77170.1| integral membrane sensor signal transduction histidine kinase
           [Dethiobacter alkaliphilus AHT 1]
          Length = 497

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 70/248 (28%), Positives = 126/248 (50%), Gaps = 4/248 (1%)

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           Q   + +      ++  + + + +A VSHE R PLT+I GF + +     G +      +
Sbjct: 245 QAVEETNKTIHEQKRLQALRQNLVASVSHEFRAPLTSIQGFVDAMLE---GFIREEEQEK 301

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           Y   I  +   +  +VNDL+D++ IESG + L +E V       +A+  V   A EK I 
Sbjct: 302 YLRVILNNTLHLNRLVNDLVDLASIESGYVQLRYEDVDPYTLAEKALDSVYPQAQEKSIK 361

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-VILRVRDT 744
           +  ++   +P I  D   + QI +N+L NAI +TP  G+I +    + ++E VI  V+D 
Sbjct: 362 LEYNYEEGLPAIRGDGDRLYQILINLLENAITYTPDEGRIALEAQLSDDKEKVIFTVKDN 421

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G G+   E+    + F ++  ++    +G GLGL + + +V  + G+  + STP +G+  
Sbjct: 422 GQGIPLAEIPYIWERFYKVDKARNRANKGKGLGLAIVRELVHMHNGEVAVKSTPGEGSAF 481

Query: 805 EIIFPLYD 812
            +I P+ +
Sbjct: 482 SVIIPIEE 489


>gi|224535688|ref|ZP_03676227.1| hypothetical protein BACCELL_00552 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522698|gb|EEF91803.1| hypothetical protein BACCELL_00552 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 980

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 82/392 (20%), Positives = 155/392 (39%), Gaps = 30/392 (7%)

Query: 436 EDVDTRINKRKMEIEVMQLCSILE---------ATSDGIAIINREGIILSTNRAVSKLFG 486
           +       +  +     +L   L               +     E I+   N    K   
Sbjct: 453 DITARNEAENALREINKKLEMTLSVARIIPWRWNLKSDMITCESEQILAHMNFTKEKGST 512

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL--SLRII 544
                I    +   +       M      + S  L+   E+  + +  E +     L   
Sbjct: 513 PQAHIIKASEYFQKMHPEDVERMQQIHKNLASGKLQHAKEEFRIITEVEGRKFTDWLETN 572

Query: 545 IKKLP-FSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                            ++  I+E K+++  L  A++ A +    KS FLA +SHEIRTP
Sbjct: 573 AVVDQYDEQGNPISLVGSLLLITERKRQEKALVTAREKALESERLKSAFLANMSHEIRTP 632

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L AIIGFS ++              E+ + I+ +  L+L +++D+LD+SKIE+  ++ ++
Sbjct: 633 LNAIIGFSSLL----TTTEDEHEREEFISIIENNNQLLLQLISDILDLSKIEANTLDFNY 688

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719
           + V L+    +    V+       +++          +  +   + Q+ +N+L NA  FT
Sbjct: 689 QNVDLNGLARDVERTVRRRLQP-NVVLNFIPGVTECHVQTERNRLSQVLINLLVNASKFT 747

Query: 720 PSGGQIIISTTHT-SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
            +G    I+  +    EE+   V+DTG G++  +  K  + F ++        +GTGLGL
Sbjct: 748 STGS---ITFGYEIRGEELYFYVKDTGRGISQEDQNKIFERFTKVDTFT----QGTGLGL 800

Query: 779 PLAKAMVDANMGKFYIFST-PAKGTLIEIIFP 809
            + K +++   G+  + S    KG+      P
Sbjct: 801 SICKNIIEKMKGRIGVESEGKDKGSTFWFTIP 832


>gi|163813929|ref|ZP_02205323.1| hypothetical protein COPEUT_00082 [Coprococcus eutactus ATCC 27759]
 gi|158450799|gb|EDP27794.1| hypothetical protein COPEUT_00082 [Coprococcus eutactus ATCC 27759]
          Length = 779

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 77/296 (26%), Positives = 143/296 (48%), Gaps = 20/296 (6%)

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH---DI-----SEWKQEKNKLSHAKKIAE 579
             +     E+ + + ++   + F       +    D+      E +Q   +L+ AK  A+
Sbjct: 158 ELVIPLANERSVYVDMLQSLIIFGIVIGSIVRFQNDVYKCKLEEIEQINEELTRAKDDAD 217

Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639
             +  KS+FLA +SHEIRTPL  I+G +E+I  +        + ++ A  I  S ++++D
Sbjct: 218 VANHAKSEFLAHMSHEIRTPLNTIVGMNEIIMRE----THEEQTMKCARDIQSSSDVLVD 273

Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RIL 698
           +V D+LD SKIESG+M +  E     + +S  +S+++  A +K + +       +   + 
Sbjct: 274 LVRDVLDFSKIESGRMEIVNEEYHFSQLLSNVLSVMESRARQKNLELDAEVQETLYNDLK 333

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE------EVILRVRDTGVGMTNYE 752
            D   + +I +N++ NA+ +T  G  I ++    ++       E+++ VRDTG+G+   +
Sbjct: 334 GDSARICRILINLIGNAVKYTKKGS-IRVTVHMENHGADPHNVELVMAVRDTGIGIKEED 392

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            E+  K F ++  S     EGTGLGL +   +V+   G     S    GT   +  
Sbjct: 393 QERLFKDFERLDLSNNRSIEGTGLGLAITYHLVEMMGGSITCHSKYGYGTTFVVKI 448


>gi|21702685|gb|AAM76053.1| two-component sensor kinase [Pseudomonas chlororaphis]
          Length = 917

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 78/243 (32%), Positives = 142/243 (58%), Gaps = 8/243 (3%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  A+K A + S  KS+FLA +SHEIRTPL  I+GF+ +++     P    R ++Y   
Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSELTP----RQLDYLGT 325

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I++S + +L I+N++LD SKIE+GK+ L   P +L + + + ++++   A+ K++ + + 
Sbjct: 326 IEKSADSLLGIINEILDFSKIEAGKLVLDSIPFNLRDLLQDTLTILAPAAHAKQLELVSL 385

Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQII---ISTTHTSNEEVILRVRDTG 745
              + P  ++ D   +KQI  N++SNAI FT  G  +    +   H  + ++ + ++DTG
Sbjct: 386 VYRDTPLSLVGDPLRLKQILTNLVSNAIKFTREGTIVARAMLEEEHEDSVQLRISIQDTG 445

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G++N ++    + F Q  NS   +  GTGLGL ++K +++   G+  + STP +G+   
Sbjct: 446 IGLSNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFW 505

Query: 806 IIF 808
           I  
Sbjct: 506 ISL 508


>gi|319956174|ref|YP_004167437.1| integral membrane sensor hybrid histidine kinase [Nitratifractor
           salsuginis DSM 16511]
 gi|319418578|gb|ADV45688.1| integral membrane sensor hybrid histidine kinase [Nitratifractor
           salsuginis DSM 16511]
          Length = 800

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 85/276 (30%), Positives = 141/276 (51%), Gaps = 13/276 (4%)

Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
           +    L     Y      + E  ++  +    ++ A++E+  KS FLA +SHEIRTP+  
Sbjct: 103 LSKVDLEAPGGYRKAFELLQEIVRQARE---DRRTAQEENQAKSLFLANMSHEIRTPMNG 159

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           IIGF+E++K+       N    E+AN I++S + +L+I+N++LD+SKIES K+ +     
Sbjct: 160 IIGFTELLKSTPL----NDEQQEFANIIEKSSHNLLNIINNILDLSKIESNKVEVEHITF 215

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPS 721
                +   I    + A E  I +      +I  R+  D   +K+I  N+L+NA+ FT +
Sbjct: 216 ETHHELDNTIDNFGVVAAENDIELYYFIDPSISSRLKGDPTKIKEILTNLLNNAVKFTEA 275

Query: 722 GGQIIISTTHTSNEE-----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
           GG+I +        +     +  RV DTG+GM+  +++K  +PF Q  +S   +  GTGL
Sbjct: 276 GGEISVEIEKLEATQGDRSLIEFRVIDTGIGMSQEQIKKIFEPFTQADSSITRKYGGTGL 335

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
           GL + K  V+   GK  + S   KG+      PL +
Sbjct: 336 GLTITKEYVELMGGKLLVESEEGKGSTFSFTLPLEE 371


>gi|170750657|ref|YP_001756917.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
 gi|170657179|gb|ACB26234.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 1076

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 94/802 (11%), Positives = 217/802 (27%), Gaps = 78/802 (9%)

Query: 55  TDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNI-----DAHGYLKEISEELPKTIGNY 109
           T+     ++     ++E             + + +      A      +S+   +  G  
Sbjct: 155 TETTGRVLAEARLRETEARIRALADHLPGGYVYQLAMAPDGADRRFLYVSQGFERMTGVA 214

Query: 110 AFKMIGMRLCD---VSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAAL 166
           A  ++         +               ++    +  +  +   +GT   V   + + 
Sbjct: 215 AEAVLADPAVAYDLILPEYRAGLAEAEAGAIRDLAHFDVEAPMRRPDGT--RVWTRIISA 272

Query: 167 PIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFS 226
           P    +    G    G+   + V +      +  +++     E  +          D   
Sbjct: 273 PRRVGD----GLVWDGLHLDDTVRHRTEEQLRESERRLRLATESAEIGLWDVDVVADTLF 328

Query: 227 QQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKK 286
              P     M    + +    A     L  E     ++  +S  + +     ++   T  
Sbjct: 329 W--PARVKAMFGISADVPVTMADYYAGLHPEDREATSAAFASALDPDRRALYDVEYRTVG 386

Query: 287 QYFGTLQ-------------NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF 333
           +  G ++                +     +               E          P   
Sbjct: 387 KEDGVVRWVAAKGRGIFEGGRCVRVIGTAIDVTARKQAEEALRASEAQFRVLSQVLPNFV 446

Query: 334 FVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
           +     G   + N         +    ++ AG    +    +   +   +  +  R+D  
Sbjct: 447 WATDAGGAADWFNERVYAYAG-REPGTLDGAGWRGIIHPDDRDRVDEEWRAAVRSRADYQ 505

Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM----- 447
                   + ++                           G   +  D +    ++     
Sbjct: 506 S------EYRLRRADGAYRWFLARAQPVRAADGAVTRWVGTSTDIDDQKRLMAELVRFNV 559

Query: 448 ------EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
                      +   +   + D + ++  +GI  + N A   + G+   +++ + F  F+
Sbjct: 560 TLEQRVAERTAEHDRVWRNSRDLLVVVGADGIFRAVNPAWQTILGHEPAEVVGRSFLDFV 619

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDI 561
                      L    +       E          +L+S R  +      +       D+
Sbjct: 620 WPEDAGPTREALDAAAAARDLTDFENRYRHKDGTPRLISWRTSV----EGAHVYAYGRDV 675

Query: 562 SEWKQEKNKLSHAKKIAEKES--SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           +  K +   L HA++   +             V+H+    LT I    + ++      L 
Sbjct: 676 TAEKAQAEALRHAEEALRQSQKLEAVGQLTGGVAHDFNNLLTIIRSSVDFLRR---PDLA 732

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
             R   Y N +  + +    +   LL  ++ ++    L  E + +   +     L+    
Sbjct: 733 EERRSRYLNAVSETVDRAAKLTGQLLAFARRQA----LKPEILDVGARLRGVADLLDT-V 787

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-------- 731
              RI + T   +    I  DL   +   +N+  NA       G + +            
Sbjct: 788 TGARIAVVTELPDQPCFIRVDLSQFETALVNMAVNARDAMDGAGTLTLRLHCGAALPPIR 847

Query: 732 ----TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
                      + + DTG G+    L +  +PF          G+GTGLGL         
Sbjct: 848 GHAGAPGPFAAIALTDTGTGIAPDVLARVFEPFFTTK----EVGKGTGLGLSQVFGFAKQ 903

Query: 788 NMGKFYIFSTPAKGTLIEIIFP 809
           + G   + S P +G    +  P
Sbjct: 904 SGGDVAVESAPGRGATFTLYLP 925



 Score =  152 bits (384), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 42/518 (8%), Positives = 116/518 (22%), Gaps = 31/518 (5%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY-GKTT 148
                    ++   + +G+     +G R  DV   +  +    I   L    TW      
Sbjct: 62  GPDLVFLY-NDAYAEILGDKHPAALGARFRDVWPEIWPEIGPLIDRALAGAATWSENMPL 120

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                G +       +  P+       +G   +             A  +  + +   L 
Sbjct: 121 TMNRHGYDEPTWFTFSYAPVRDEAGRVAGL--YCACTETTGRVLAEARLRETEARIRALA 178

Query: 209 EIKKG------HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
           +   G        + +               +      + L +     D +L   +  L 
Sbjct: 179 DHLPGGYVYQLAMAPDGADRRFLYVSQGFERMTGVAAEAVLADPAVAYDLILPEYRAGLA 238

Query: 263 TSEE------SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH--RNHPSLSAY 314
            +E       +    +      +  +   +      +      ++ L             
Sbjct: 239 EAEAGAIRDLAHFDVEAPMRRPDGTRVWTRIISAPRRVGDGLVWDGLHLDDTVRHRTEEQ 298

Query: 315 FDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
             E E       +   I  + V    +  +       +    +     +   ++      
Sbjct: 299 LRESERRLRLATESAEIGLWDVDVVADTLFWPARVKAMFGISAD----VPVTMADYYAGL 354

Query: 374 KLSDNNAIKPVMLYRSDRTCIA-ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
              D  A         D    A       T+         +              +   G
Sbjct: 355 HPEDREATSAAFASALDPDRRALYDVEYRTVGKEDGVVRWVAAKGRGIFEGGRC-VRVIG 413

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
              +    +  +  +     Q   + +   + +   +  G     N  V    G     +
Sbjct: 414 TAIDVTARKQAEEALRASEAQFRVLSQVLPNFVWATDAGGAADWFNERVYAYAGREPGTL 473

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
               +   +  +    ++      +        +        +          + +  + 
Sbjct: 474 DGAGWRGIIHPDDRDRVDEEWRAAVRSRA--DYQSEYRLRRADGAYRWFLARAQPVRAAD 531

Query: 553 C----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
                +  T  DI + K+   +L       E+  + ++
Sbjct: 532 GAVTRWVGTSTDIDDQKRLMAELVRFNVTLEQRVAERT 569


>gi|189909662|ref|YP_001961217.1| two component response regulator [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167774338|gb|ABZ92639.1| Two component response regulator [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
          Length = 538

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 108/534 (20%), Positives = 203/534 (38%), Gaps = 50/534 (9%)

Query: 310 SLSAYFDEGENLTPETVDKCPIPFF--VYSHGNLF-YANPSFLLLTKYKSVDDIEIAGGL 366
             +   +E        +   P  F+  +   G +  Y    F+ +   +  + +      
Sbjct: 14  PSAFPHEEVLRELENLLRSNPD-FWLKINRDGIIVDYKTSRFVNI--GEKPEHLLGKHIN 70

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
             L   P L D  +     L                                E       
Sbjct: 71  EGL--PPYLRDITSEALEYLTDKKSLVFWKEYSYGVAP---------NIRHVEVRFVVLY 119

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
           +        +  + +  +        +  S+ +  +D I IIN EGII   N+     FG
Sbjct: 120 DGFIMSNHRDITERKRLENAFLESESRFLSMAQNAADSIIIINDEGIIQFFNKTAEDTFG 179

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRII 544
           Y  ED++ K  T+ +        + +L      +    +   +         ++    + 
Sbjct: 180 YKQEDVIGKNVTMIIPPEYKGKHDTFLKRYKDTEENHIIGVGREVFAQRMSGEVFPCELS 239

Query: 545 IKKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKI------------------AEKESSH 584
           + +    +   ++  + DIS+ K ++ +L   +                    AE+ S  
Sbjct: 240 VGEFKTKTGKMFTGILRDISQRKLQEEELYQYRNHLEDLVESQTMDLKMSKNIAEEASYM 299

Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
           KS FLA +SHE++TP+ AI+ ++E +  ++   +   +  EY   ID SG  +L ++ +L
Sbjct: 300 KSLFLANISHELKTPIHAILSYAE-LGAEKSASVSPEKIKEYFQIIDSSGKRLLSLLENL 358

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704
           LDI+K+ESGKM   FE   L E     I+ ++    ++ I +             D   +
Sbjct: 359 LDIAKLESGKMRYLFEKNCLKETTKFVINEMRAILEKRGITVVLLDKEERWEAEFDYERI 418

Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTS------NEEVI---LRVRDTGVGMTNYELEK 755
           +Q+  NI+SNA+ F P+   I IS              V    +++RD G G+   +L+K
Sbjct: 419 QQVIRNIISNALKFIPNDTNIEISLIKREFIPRKSQSYVKGIGIQIRDFGPGIPAEDLDK 478

Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             + F Q    +    +GTGLGL +++ +V+ + G  Y  +   KG +  ++ P
Sbjct: 479 IFEKFIQSKQVKAG-TKGTGLGLSISREIVNDHNGLLYAENHEEKGAVFTMLIP 531


>gi|323495545|ref|ZP_08100619.1| putative two-component regulatory system multi-sensor hybrid
           histidine kinase [Vibrio sinaloensis DSM 21326]
 gi|323319426|gb|EGA72363.1| putative two-component regulatory system multi-sensor hybrid
           histidine kinase [Vibrio sinaloensis DSM 21326]
          Length = 1198

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 76/250 (30%), Positives = 126/250 (50%), Gaps = 8/250 (3%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
             ++  NKL+ A+  A   +  KSDFLA +SHEIRTP+ AIIG S +             
Sbjct: 459 ALERFANKLAIARDEANSANRAKSDFLANMSHEIRTPMNAIIGMSYLALKTDLTKA---- 514

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
              Y + +  S + +L ++ND+LD SKIE+GK+++      L+  +    +LV L A+E+
Sbjct: 515 QRNYIHKVKLSADSLLGLINDILDFSKIEAGKLDIEQVDFQLENVLDNISNLVGLRASER 574

Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVI-- 738
            + +      ++P  ++ D   + Q+ +N+ +NA+ FT  G  +I +S    S E +   
Sbjct: 575 GLELLIHIERDVPTALVGDPLRLGQVLINLSNNAVKFTERGEIKITVSVAERSGENIRLK 634

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
            RV D+G+GMT  + +K    F Q  +S   +  GTGLGL ++K +     G   + S  
Sbjct: 635 FRVSDSGIGMTPEQTQKLFSKFTQADSSTTRKYGGTGLGLAISKELSQLMGGDIQVESEA 694

Query: 799 AKGTLIEIIF 808
             G+      
Sbjct: 695 GVGSTFSFTI 704


>gi|319900185|ref|YP_004159913.1| PAS/PAC sensor signal transduction histidine kinase [Bacteroides
           helcogenes P 36-108]
 gi|319415216|gb|ADV42327.1| PAS/PAC sensor signal transduction histidine kinase [Bacteroides
           helcogenes P 36-108]
          Length = 982

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 123/711 (17%), Positives = 229/711 (32%), Gaps = 57/711 (8%)

Query: 117 RLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT-----LWPIEGTNLYVPIDLAALPIYSR 171
            + D+    H    + + +  ++      +T      +      +    + +  +P +  
Sbjct: 306 TVEDILQRTHPHDRDALAETFRKACNLADETLEVRFRILHPNTPDYRHEV-MTLVPDHGP 364

Query: 172 NREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI-KKGHSSVEKEKYDIFSQQSP 230
             E   + G   +     +   R   +   K+   L+E  K      + EK ++ S    
Sbjct: 365 ENEVIAYSG--KMRDMTDEVQGRQKLEDRMKQIQALNEKYKISLWEYDMEKDELVSDNEG 422

Query: 231 PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHT---INLNQYTKKQ 287
             +   ++          H DD      +       +   E   F      +        
Sbjct: 423 SSNPLYRSLNMEEYIKTLHPDDQSTARHFIEEMRNHTFKMEPYVFRHYMGPDTPYIYLHY 482

Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP--IPFFVYSHGNLFYAN 345
               +++ S E   Y+      +                 +        ++        N
Sbjct: 483 VPSCVRDESGEIKRYIFICRDITQEREQLHEITRYATHTHQINKSCGITLWK------YN 536

Query: 346 PSFLLLTKYKS--VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403
           P +  +       +D+         LL     +D + +    L RS   C          
Sbjct: 537 P-YTRIFHNIDPYLDEYSPDMSADDLLRFTHPNDKDTVSQ-YLGRSAGLCTDMQQFHCHC 594

Query: 404 QWNRE-NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
            W    +     FI     ++            ++ +     R +               
Sbjct: 595 AWENSMDYRYYNFIQMPFFDENGTLTEYGITRIDETEKEQTDRMLRFSQEVGK------- 647

Query: 463 DGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
            G   I+ R G  + T   +  L    V+D         + +      N    E      
Sbjct: 648 VGSWSIDLRTGKHMHT-EEIHTLLELDVDDPDF-DIRSCIYEEDRPEFNRLAAESKEQGA 705

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKI 577
                 I    T   K+  +      +  +      Y  T+ D+++  +        +  
Sbjct: 706 --DFSYILRFKTPGGKIKWMESRCIAIKDTEDKVAGYYGTLTDVTDMHRA-------RLK 756

Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
           AE+    KS FLA +SHEIRTPL +I+GFS+++  +   P       E+   I  +   +
Sbjct: 757 AEESDQLKSAFLANMSHEIRTPLNSIVGFSDILVTEDLSP---EDKREFGKIIRSNNEQL 813

Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697
           L ++ND+LD+SK+ESG +        ++E + E  S  Q    E    +         R+
Sbjct: 814 LTLINDILDLSKLESGCVEFTETDFGVEELLGEIFSSYQPRFRELPTKLVYVPKGKSIRL 873

Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757
             D + + ++  N ++NAI +T  G  I +         V   V DTGVGM    L+K  
Sbjct: 874 HQDRQRLIEVLTNFVNNAIKYTSEGS-ITLDYEKVDQG-VKFTVTDTGVGMPPEALDKIF 931

Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
             F ++ +      +GTGLGL + K + D   GK  + ST  KG+      
Sbjct: 932 NRFEKLGSM----VKGTGLGLSICKMLADRMHGKIGVDSTLGKGSTFWFWL 978



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/301 (9%), Positives = 85/301 (28%), Gaps = 13/301 (4%)

Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY--ANPSF 348
            +Q+        L      +     +       + +      F +     +         
Sbjct: 233 PIQDRKGRFIVNLLLVRDITQDTLRERENVRFQKKLYILDEHFHLT---RILLNPHKRVI 289

Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
             +    + D   I   +  +L      D +A+        +        R   +  N  
Sbjct: 290 QQMQHTDNGDTTAIEWTVEDILQRTHPHDRDALAETFRKACNLADETLEVRFRILHPNTP 349

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468
           +                E +  +G   +  D    ++K+E  + Q+ ++ E     +   
Sbjct: 350 DYRHEVMTLVPDHGPENEVIAYSGKMRDMTDEVQGRQKLEDRMKQIQALNEKYKISLWEY 409

Query: 469 NRE-GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
           + E   ++S N   S         +  + +   L  +  S   H++ E+ +   +     
Sbjct: 410 DMEKDELVSDNEGSSNPL---YRSLNMEEYIKTLHPDDQSTARHFIEEMRNHTFKMEPYV 466

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
                  +   + L  +   +   S     Y     DI++ +++ ++++       + + 
Sbjct: 467 FRHYMGPDTPYIYLHYVPSCVRDESGEIKRYIFICRDITQEREQLHEITRYATHTHQINK 526

Query: 584 H 584
            
Sbjct: 527 S 527



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/196 (7%), Positives = 38/196 (19%), Gaps = 18/196 (9%)

Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
              +    N            +             +        +K    + Q   I   
Sbjct: 83  FRTKDADGNYRHYNIRFMRHTDAQGNMDYMLCTRRDITVKVEQHQKQTELINQFTGIFNQ 142

Query: 461 TSDGIAIINREGIILSTNRAV---------SKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
                   + EG +L+ N              +    +                     +
Sbjct: 143 LPYAFLTFDNEGKVLNANELAILMSREKFHCDIHKVNIIQYYVYNDEHREAFCQHRPFTY 202

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT----MHDISEWKQE 567
            L+  L  +      +  +     E      I    +       +     + DI++    
Sbjct: 203 TLSTQLDGEAGMPFCQENI-----EHFFVGDINYIPIQDRKGRFIVNLLLVRDITQDTLR 257

Query: 568 KNKLSHAKKIAEKESS 583
           + +    +K       
Sbjct: 258 ERENVRFQKKLYILDE 273


>gi|117925402|ref|YP_866019.1| Cache sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117609158|gb|ABK44613.1| Cache sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1361

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 86/258 (33%), Positives = 134/258 (51%), Gaps = 8/258 (3%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
             +  +++L+      E+ S  KSDFLA +SHE+RTPL AII  S ++     G L    
Sbjct: 686 ALQHSQHELNQRAIQLEEASQFKSDFLANMSHELRTPLNAIILISNLMSRDETGRLDQES 745

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             E    I  +GN +L ++ND+LD+SK+E+G+M +H E V   E V E   L +  A EK
Sbjct: 746 I-ERTRVIYNAGNDLLRLINDILDLSKVEAGRMEVHLETVHSQELVEELEPLFRDSAQEK 804

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE--VILR 740
           +I +R           +D + V QI  N+LSNAI FT  G  +I+    + + +  + L 
Sbjct: 805 KIELRFD-DQLQGCFTSDHQKVVQILRNLLSNAIKFTAQGS-VILRLAKSDHPQYPIRLS 862

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V DTG+G++  ++    + F Q+  S   +  GTGLGL +         G+  + S   K
Sbjct: 863 VTDTGIGISKDKMPYIFEAFRQMDGSISRQYGGTGLGLAITHRFATLLKGEVELHSEEGK 922

Query: 801 GTLIEIIFPLYDTSHPHD 818
           G+   ++ PL   +HPH+
Sbjct: 923 GSQFTLLLPL---AHPHE 937


>gi|320107191|ref|YP_004182781.1| multi-sensor signal transduction histidine kinase [Terriglobus
           saanensis SP1PR4]
 gi|319925712|gb|ADV82787.1| multi-sensor signal transduction histidine kinase [Terriglobus
           saanensis SP1PR4]
          Length = 985

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 95/550 (17%), Positives = 197/550 (35%), Gaps = 27/550 (4%)

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
             L  + D   +  +   +      +   +            P L+A            +
Sbjct: 433 RGLSSETDLAALAQSIVERLSQTLLVARVAVFLAPVGEDSQGPQLAAAHGLTPGEIARIL 492

Query: 327 DKCP-IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
           +  P   F  +   +    N    L     +   +E    L+  LD              
Sbjct: 493 ENAPNAGFLRFDAEHHHEENGHIFLEKPEDARTLVEKDRSLAATLDMHYFLPCRVAD--- 549

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
             R      A +        + +   +      E    +     QN      ++T+I + 
Sbjct: 550 --RRTGRARAIAVIGLGRTQDDDFLSSEDMEFLESLAGYIGIAIQNAQLFRSLETKITEF 607

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           +   E  +  +I+E+   GI  ++ E  I S N  +  ++     + L +  T     + 
Sbjct: 608 ERLKEFNE--NIVESIKVGIFTLDLEDRIESWNAEMEVMYALSRGEALGRSITEVFPASF 665

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF--SSCYSLTMHDISE 563
                               +        E +  ++ I         S    + + DI+ 
Sbjct: 666 VEAFE---RSKTESGTHHLSKVRLQMLAGETRTANIAIAPLLTRDFVSVGRIVLVDDITG 722

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + + +L+ A+K+     S      A V+HE+ TPL  I  ++++++ Q      +PR 
Sbjct: 723 RVELEAQLTQAEKL-----SSIGLLAAGVAHEVNTPLAVISSYTQMLRKQ---TSDDPRL 774

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
               + I +      +IVN LL+ S+    K +  F PV ++  + E ++L++      +
Sbjct: 775 SMVLDKITQQTFRASEIVNGLLNFSR----KTSSEFVPVDMNAVLKETVALLEHQFRTAK 830

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS-NEEVILRVR 742
           + ++   A  +P +      ++Q+ LN++ NA           ++    + +  V+L + 
Sbjct: 831 VTVQADLAATLPCVDGSQGKLQQVVLNLMLNAKDAMADSTTPHLTVATRATDTHVLLSIS 890

Query: 743 DTGVGMTNYELEKAMKPFGQIPNS-QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
           D G G+    L K   PF    N+ ++ + +GTGLGL ++  +V  + GK  + S   +G
Sbjct: 891 DKGSGIDPAHLHKIYDPFFTTKNAPREGQHKGTGLGLAVSYGIVQEHGGKIRVDSAVGQG 950

Query: 802 TLIEIIFPLY 811
           T   + FP+ 
Sbjct: 951 TTFHLEFPIS 960


>gi|254444452|ref|ZP_05057928.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198258760|gb|EDY83068.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 439

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 73/377 (19%), Positives = 159/377 (42%), Gaps = 29/377 (7%)

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
           ++ Q+ + L +  +G+ I++R+  IL  N A++K+F    + + ++           S  
Sbjct: 78  QLNQIETTLGSLQEGVVIVDRDNYILLVNNALTKIFPSMTDRVGQR----IESGMGSSEF 133

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL-----PFSSCYSLTMHDISEW 564
             ++ ++         E         +  + L +   +L          +   +HD +  
Sbjct: 134 LDFVWDVKKGRGPAKREIEIRN---GQNEIWLDVTAARLSEALEGNGPWFLFVLHDTTRQ 190

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           K  +                +  F+A  SHE++TP++ I G+SE +           R  
Sbjct: 191 KLLE--------------RARKHFVANASHELKTPVSVIKGYSETLVTDHETMPVEDRNR 236

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
            + + I R    +  ++NDLL +S++ES   +  +    +   + E  +  +    +  +
Sbjct: 237 -FISTIFRHAERLALLINDLLSLSRLESNSPSFDWSESDILPWIREIAADYRSNPRKVGL 295

Query: 685 LIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
            + T+FA ++   +  D+  ++Q+  N++ NA  ++P  G I I        E+++ V+D
Sbjct: 296 QVDTAFAEDLKAPVRFDVLKLRQVFDNLVENASKYSPDNGHISIGARIR-GAELLIWVQD 354

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
            GVG+   +L +  + F ++   +     GTGLGL + K +V+ + G  +  +    G  
Sbjct: 355 EGVGVPEEDLGRIFERFYRVDKGRSRETGGTGLGLSIVKHIVEWHDGHVWAENAEEGGLK 414

Query: 804 IEIIFPLYDTSHPHDCI 820
           +    P+   S   + I
Sbjct: 415 VVFGLPILSLSASSNLI 431


>gi|82702320|ref|YP_411886.1| periplasmic sensor hybrid histidine kinase [Nitrosospira
           multiformis ATCC 25196]
 gi|82410385|gb|ABB74494.1| periplasmic sensor hybrid histidine kinase [Nitrosospira
           multiformis ATCC 25196]
          Length = 697

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 79/267 (29%), Positives = 132/267 (49%), Gaps = 13/267 (4%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E +Q     + A+  AE+ S  K +FLA +SHE+RTPL AI+G+S++I +   G L    
Sbjct: 294 EKRQLLENETIARNEAERASRLKDEFLATLSHELRTPLNAILGWSQLILS---GNLKKED 350

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                  I+R+  +   ++ DLLD+S I SGK+ L      +   V  A+  V+  A  K
Sbjct: 351 IHRGLETIERNARVQNKLIEDLLDMSSIISGKVRLDMRRQDIANLVETAVESVKPTAQAK 410

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
            ++++ +       I+ D   ++QI  N+LSN+I FTP GG+I ++     N  + +R+ 
Sbjct: 411 GVILKKTLGKKFDSIIGDSNRLQQILWNLLSNSIKFTPKGGKIEVTVEQR-NLFLEIRIS 469

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKG 801
           D+G G+T+  +      F Q   S   +  G GLGL + K +V+ + G     S    +G
Sbjct: 470 DSGSGITSAFMPYVFDRFRQGDASLTRQYGGLGLGLAIVKQLVELHGGTVRAESPGEGQG 529

Query: 802 TLIEIIFPLY--------DTSHPHDCI 820
           +   +  P+         +   P +CI
Sbjct: 530 SSFIVNLPVAPPVSETKSEPLPPQECI 556


>gi|326793449|ref|YP_004311269.1| integral membrane sensor hybrid histidine kinase [Marinomonas
           mediterranea MMB-1]
 gi|326544213|gb|ADZ89433.1| integral membrane sensor hybrid histidine kinase [Marinomonas
           mediterranea MMB-1]
          Length = 1148

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 72/253 (28%), Positives = 134/253 (52%), Gaps = 6/253 (2%)

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            + +I   ++    L  AK++AE+ +  KS +L  +SHE+RTPL +IIG+++++ +++  
Sbjct: 657 LVKEIDAHQETDRALQDAKELAERANEAKSRYLTGISHELRTPLQSIIGYAQLLSDKKDA 716

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
           P    ++    + I RSG  + D++  LLDISKIE+G+ +L+   V L   + +  S+ +
Sbjct: 717 PT---QHQNGLDIIQRSGLYLADLIEGLLDISKIEAGRFDLYRNTVDLPNLIEQLESMFE 773

Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
           + A  K I    +    +PR ++ D + ++QI +N+LSNA+ +T  G ++     +  N+
Sbjct: 774 MQARGKGIEFELNIRAPLPRLVITDEKRLRQILINLLSNAVKYTQKG-KVTFDINYR-NQ 831

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
                + DTGVG+    L++   PF ++ +       GTGLGL + K + +   G     
Sbjct: 832 VAEFHIVDTGVGIKEEYLQRIFDPFERVRDRYSANLPGTGLGLTIVKLLTEIMGGDLKAR 891

Query: 796 STPAKGTLIEIIF 808
           S    G+   +  
Sbjct: 892 SEVGSGSEFTVSL 904


>gi|162448655|ref|YP_001611022.1| two-component sensor histidine kinase [Sorangium cellulosum 'So ce
           56']
 gi|161159237|emb|CAN90542.1| two-component sensor histidine kinase [Sorangium cellulosum 'So ce
           56']
          Length = 534

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 90/333 (27%), Positives = 160/333 (48%), Gaps = 35/333 (10%)

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
              +P    L       +  +L  +L            +  +  + LL+  + +  +  S
Sbjct: 206 AEGRPRAPRLRPERLGAIADHLRSVL----------DLILFSGHKSLLTSTMHVASIRES 255

Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
                   ++S+      +L  A +  ++    KS+FLA VSHE+RTPLT+I+G+SE++ 
Sbjct: 256 ------FRELSQK---NAELEQAYERLKELDRLKSNFLATVSHELRTPLTSIMGYSEMLA 306

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
               GPL +    E+ + I      +L ++  LLD+SK+ESG + +H   V++   + EA
Sbjct: 307 EGIGGPLTDE-QREFIDTIRSKSEQLLGLIMSLLDLSKLESGTLIVHRTEVAVGPVLVEA 365

Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
            S +   A++K + +R    +++P +L D   ++Q+ +N++ NA+ FT +GG++++    
Sbjct: 366 ASTIAPAASKKGVELRIQAEDDLPPVLGDGDRLRQVFINLVENAVKFTEAGGEVLLVARA 425

Query: 732 TSNEE---------------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
            S +                V +RV DTG+G+   E  K   PF QI  S      GTGL
Sbjct: 426 VSEDMDDLPGLVLVAPLQQAVEIRVVDTGIGIPAGERLKVFDPFYQIDQSSTREHGGTGL 485

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GL + K +V+A+ G   I     +GT+  +  P
Sbjct: 486 GLSIVKRLVEAHSGTVRIEPNDPRGTVFVVKLP 518


>gi|121611393|ref|YP_999200.1| PAS/PAC sensor hybrid histidine kinase [Verminephrobacter eiseniae
           EF01-2]
 gi|121556033|gb|ABM60182.1| PAS/PAC sensor hybrid histidine kinase [Verminephrobacter eiseniae
           EF01-2]
          Length = 737

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 98/583 (16%), Positives = 188/583 (32%), Gaps = 64/583 (10%)

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
              +                        L    +   E L +       A  +       
Sbjct: 10  DPAAWRHLAPVAPLAAQRAPAAGLSAEALVAELERQNEVLRYSQ-----AVAESTYERFE 64

Query: 324 ETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
                 P+   V      +  AN       +    D       L+ LL   +  D   ++
Sbjct: 65  TLFASVPLALMVLDSHDVVVQANAMAHRCFQPGERD-----RPLTALLPFVRAQDAPRVQ 119

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA------------NQFPENMPQ 430
                  ++    A   +  I  +   +  +     E              +Q P    +
Sbjct: 120 AAFAQARNQGHSQAKEVVFAIGADGRITGDLHIARIEAPQDALPQFLCAVIDQGPLLAER 179

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490
             ++      +    ++     +L ++++A  D I  +++   I   N   + LF     
Sbjct: 180 QALQRSARALQQRNGQLHASQKRLAAVIDAALDAIVCVDQHQRITVFNPRAAALFQCHAS 239

Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
           D L      FL                 L   ++  +  +  +   + L+L + +     
Sbjct: 240 DALGSRLERFLP-----------DAAAVLAQARSGTREMMAQSASGQPLALEVSLSFERH 288

Query: 551 SSCYSLTM--HDISEWKQEKNKLSHAKKIAEKE--SSHKSDFLARVSHEIRTPLTAIIGF 606
           +   + T+   D++  K+ + + +  +    +             ++H+    L AI+G 
Sbjct: 289 AQGQTTTVFARDLTGRKKAEAERNELEAQLRESHKMQAVGTMAGGIAHDFNNILGAILGN 348

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
                 Q      +P        ID++G    D+V  +L  S+            +SL +
Sbjct: 349 VA--LAQADCAPDSPVLQSLLE-IDKAGRRARDLVRQILTFSR----NQPPQRSVLSLAD 401

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG-GQI 725
            V +   L+++      I ++      +P +LAD   V Q  LN+ +NAIH   SG G I
Sbjct: 402 MVHDTERLLRVTLPPA-IGLQMQLQPGLPWVLADATQVGQALLNLCTNAIHAIGSGRGSI 460

Query: 726 II-------------STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
            +                    + V L VRDTG GM    LE+  +PF          G+
Sbjct: 461 HVEAATVSADQHLIERLGLAPGDYVALSVRDTGPGMDAATLERIFEPFFTTKP----VGQ 516

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
           GTGLGL +   ++ ++ G   + S P +G+   + FP+   S 
Sbjct: 517 GTGLGLAVVHGVMRSHEGSVAVHSRPGQGSCFTLYFPVAPGSA 559



 Score = 46.2 bits (108), Expect = 0.022,   Method: Composition-based stats.
 Identities = 36/410 (8%), Positives = 103/410 (25%), Gaps = 62/410 (15%)

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK---VSSLTEYYAHKDDVLKTE 257
           ++  +    +      ++     + +        +   +   +++L  +   +D      
Sbjct: 61  ERFETLFASVPLALMVLDSHDVVVQANAMAHRCFQPGERDRPLTALLPFVRAQDAPRVQA 120

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
            +    ++  S  ++  F      + T   +   ++       ++L             +
Sbjct: 121 AFAQARNQGHSQAKEVVFAIGADGRITGDLHIARIEAPQDALPQFLCAVIDQGPLLAERQ 180

Query: 318 GENLTPETVDK-------------------CPIPFFVYSHGNLFYANPSFLLLTKYKSVD 358
               +   + +                         V  H  +   NP    L +  + D
Sbjct: 181 ALQRSARALQQRNGQLHASQKRLAAVIDAALDAIVCVDQHQRITVFNPRAAALFQCHASD 240

Query: 359 DIEIAGGLSTLLDAPKLSDNNAI---KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
            +     L   L         A    + +M   +    +A    L   +  +  +  +  
Sbjct: 241 ALGSR--LERFLPDAAAVLAQARSGTREMMAQSASGQPLALEVSLSFERHAQGQTTTVFA 298

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
                  +               +   N+ + ++        +   + GIA         
Sbjct: 299 RDLTGRKKA--------------EAERNELEAQLRESHKMQAVGTMAGGIA--------H 336

Query: 476 STNRAVSKLFG----YPVEDILRKPFTVFLEQNTP--SVMNHYLTEILSLDLRQTLEKIT 529
             N  +  + G       +     P    L +           + +IL+    Q  ++  
Sbjct: 337 DFNNILGAILGNVALAQADCAPDSPVLQSLLEIDKAGRRARDLVRQILTFSRNQPPQRSV 396

Query: 530 LGS----TKEEKLLSLRIIIK---KLPFSSCYSLTMHDISEWKQEKNKLS 572
           L         E+LL + +      ++         + D ++  Q    L 
Sbjct: 397 LSLADMVHDTERLLRVTLPPAIGLQMQLQPGLPWVLADATQVGQALLNLC 446



 Score = 45.8 bits (107), Expect = 0.034,   Method: Composition-based stats.
 Identities = 28/280 (10%), Positives = 67/280 (23%), Gaps = 17/280 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D H  +   +         +A   +G RL                 +L +  +   +  
Sbjct: 217 VDQHQRITVFNPRAAALFQCHASDALGSRLERFLPDA--------AAVLAQARSGTREMM 268

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                G  L + + L+        R   G                 A    L+ +    H
Sbjct: 269 AQSASGQPLALEVSLSF------ERHAQGQTTTVFARDLTGRKKAEAERNELEAQLRESH 322

Query: 209 EIKKGHSSVEKEKYD---IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
           +++   +      +D   I         L   +         +  +      +   L  +
Sbjct: 323 KMQAVGTMAGGIAHDFNNILGAILGNVALAQADCAPDSPVLQSLLEIDKAGRRARDLVRQ 382

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
             +    +      L+          L   +      L  +  P L     +   +    
Sbjct: 383 ILTFSRNQPPQRSVLSLADMVHDTERLLRVTLPPAIGLQMQLQPGLPWVLADATQVGQAL 442

Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365
           ++ C         G       +  +      ++ + +A G
Sbjct: 443 LNLCTNAIHAIGSGRGSIHVEAATVSADQHLIERLGLAPG 482


>gi|24373129|ref|NP_717172.1| phosphate regulon sensor protein PhoR [Shewanella oneidensis MR-1]
 gi|24347328|gb|AAN54616.1|AE015602_2 phosphate regulon sensor protein PhoR [Shewanella oneidensis MR-1]
          Length = 432

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 70/370 (18%), Positives = 147/370 (39%), Gaps = 33/370 (8%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           R    ++   + +     EA  D   +++ E  IL  N+    + G+       +     
Sbjct: 87  RRRVGQLAALLGRFRQGAEALPDAAVVLDSEHNILWCNKLAQLMLGFVWPQDNGQRIDNL 146

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
           +     S        I +   ++ L         E +LL +RI+           L   D
Sbjct: 147 IRHPDFSAY------IKAGKYKEPL--ELTSPVSERRLLEIRIMAY---GDRQLLLIARD 195

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I+  +Q +                + +F+A VSHE++TPLT + G+ E++++       N
Sbjct: 196 ITRIRQLEG--------------MRKEFVANVSHELKTPLTVLQGYLEMMQSMAEPDSMN 241

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIE-SGKMNLHFEPVSLDEAVSEAISLVQLYA 679
            +       + +    +  +V  LL +S+IE +  ++L    V++ + +       +  A
Sbjct: 242 AKP---LALMQQQTQRMQSMVEQLLVLSRIEDAADIDLENT-VNMSQLMDVLKEEAKALA 297

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
            +K   +       +     +   ++    N++SNAI +T  GG+I +     +   +  
Sbjct: 298 KDK-YELSFHCEPGLDS-HGNELQLRSACSNLISNAIRYTEPGGKISVQWRSVATGGL-F 354

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V DTG G+    + +  + F ++ +++  +  G+GLGL + K  +  +  +  I S   
Sbjct: 355 SVADTGEGIAPQHISRLTERFYRVDSARSRQTGGSGLGLAIVKHALSHHHSELNISSELG 414

Query: 800 KGTLIEIIFP 809
           KG+    + P
Sbjct: 415 KGSTFSFVIP 424


>gi|56477789|ref|YP_159378.1| two component sensor protein [Aromatoleum aromaticum EbN1]
 gi|56313832|emb|CAI08477.1| Two component sensor protein [Aromatoleum aromaticum EbN1]
          Length = 658

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 79/582 (13%), Positives = 195/582 (33%), Gaps = 42/582 (7%)

Query: 239 KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE 298
           +V  L      + ++       L+     ++P    F                + + S +
Sbjct: 106 RVIWLDAEGRREGEMPPMSGSHLIGESVGAVPADSVFRLARAIGRRAYGPAYEVADGSHQ 165

Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVD 358
              ++   +  +         +L      + P   +      +   +     +     V 
Sbjct: 166 FEVHVPIHSEDAFIGAVVGIYSLHELIARELPW--WFSERYRVSVVDADGRQIVAKSKVA 223

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
            +      +   D P                    +  +A     +W     + +  I  
Sbjct: 224 PLSGDLNYTIPFDPPGH---------------GLSLHITAYRGETRW-----VPVLLIAS 263

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
                         +  + V     ++ +  E +   ++ ++   G+   + +G I   N
Sbjct: 264 TVLLAGIIVWSVWQLRRQLVRRHSAEQALRSESLFRKAMEDSLLTGLRARDLDGRITYVN 323

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
            A  ++ GY  E+++ +   +             + +++                K  + 
Sbjct: 324 PAFCRMVGYSPEELIGRLPPMPYWDPDHLERTQEVHDMILSGAAPPEGVELRLRRKNGER 383

Query: 539 LSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSH--KSDFLARV 592
           L   I    L  ++     +  ++ DI+E K+ +      ++  +  S      +  + +
Sbjct: 384 LDALIFEAPLIDAAGCHTGWMGSLLDITEQKRARELGRQQEERLQATSRLVTMGEMASTL 443

Query: 593 SHEIRTPLTAIIGF-SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           +HE+  PL AI  + +  +       +      +    + R      +I+  + D  +  
Sbjct: 444 AHELNQPLAAIASYNTGCLNRLEQATIDRDELRDIHAKLGRQARRAGEIIRRVHDFVR-- 501

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
             +     E +  +  + EAI L++  A ++R+ I T  A  +P I AD   ++Q+ +N+
Sbjct: 502 --RAEPKRETLDFNTVIREAIGLIEADARKRRMRIETDLAPRLPDIPADPVMIEQVIVNL 559

Query: 712 LSNAIHFTPSG--GQIIISTT-HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
           + N +        G+  +         ++++RV D+G G+      +  +PF        
Sbjct: 560 VRNGMDAMHDNPPGRRTVRVATREEGGQLVVRVADSGRGIDPDIARRLFEPFFTTKP--- 616

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
              EG G+GL + +++ + + G+    S P  GT+  + FP+
Sbjct: 617 ---EGMGMGLNICRSIAELHHGRLGFESNPDGGTIFILSFPV 655



 Score = 74.7 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 24/248 (9%), Positives = 65/248 (26%), Gaps = 9/248 (3%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCD-VSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           D  G +  ++    + +G    ++IG        D  H++    + D++           
Sbjct: 314 DLDGRITYVNPAFCRMVGYSPEELIGRLPPMPYWDPDHLERTQEVHDMILSGAAPPEGVE 373

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           L         +   +   P+       +G+ G   +         R LG++ +++     
Sbjct: 374 LRLRRKNGERLDALIFEAPLIDAAGCHTGWMG--SLLDITEQKRARELGRQQEERLQAT- 430

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
                  ++ +    +  + + P           L        D  +          ++ 
Sbjct: 431 ---SRLVTMGEMASTLAHELNQPLAAIASYNTGCLNRLEQATIDRDELRDIHAKLGRQAR 487

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
              +      +  +  + +      N        L   +        +   +L P   D 
Sbjct: 488 RAGEIIRRVHDFVRRAEPKRETLDFNTVIREAIGLIEADARKRRMRIET--DLAPRLPDI 545

Query: 329 CPIPFFVY 336
              P  + 
Sbjct: 546 PADPVMIE 553


>gi|298251558|ref|ZP_06975361.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297546150|gb|EFH80018.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 636

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 95/659 (14%), Positives = 212/659 (32%), Gaps = 63/659 (9%)

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244
             N     P         +               + +    S        + +N+     
Sbjct: 10  QENTTQRPPEEADFVDRFRAMMEGSTDIFCILTLRGEVREISPSWHNFTGQEENEYRGKG 69

Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQE--DFHTINLNQYTKKQYFGTLQNNSKESFEY 302
              A         +  L+ +  S    +        + +          ++  S   +E 
Sbjct: 70  WLEAFHPADQPQVEEALIQTVISGRSSEHTRRVRRYDGSYRLIHWRLIPVRKPSGAIYEL 129

Query: 303 LS-HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY-ANPSFLLLTKYKSVDDI 360
           ++   +           E      V    +    ++   L +       +      V   
Sbjct: 130 VAYGTDVTEQELAKQMSEAEMQLAVKASGVGLLDWNLLTLQFVCTDQMAVHLGLSPV--- 186

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
               G      A    D+         R+       S    TI W   +   +       
Sbjct: 187 --TSGSEEQFLACVHPDDREKVKRAHQRALTEKRDYSIEYRTI-WPDGSLHWLIARVQCI 243

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
           ++   + +   G+  +  + +  +  +     +    +++    +A+++ EG +   N A
Sbjct: 244 SDLRGKPIHLIGVGLDVTELKQAEEALRESEARFRHFMDSNIIAMALVDLEGTVHEANDA 303

Query: 481 VSKLFGYPVEDIL--RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
           + KL GY  ED+   R  +T        +     + E+ +  + Q  EK  +   K+   
Sbjct: 304 LLKLLGYTREDLTAGRMQWTTMTPPEYRAQDARAIEELQTTGVVQPFEKEYVA--KDGTR 361

Query: 539 LSLR---IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
           + +     +++++  S      + D++  K+ +                K  FL   SHE
Sbjct: 362 VPVLNGGTLLRRVGSSPLAITFVLDLTARKEVE--------------RQKDLFLGITSHE 407

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPR------------YIEYANYIDRSGNLVLDIVND 643
           ++TPLTA+ G  ++I+ +    +                  +      R  +    ++ND
Sbjct: 408 LKTPLTALRGTLQLIQRRLKRVVTTADNVSPEWSTFVQGLTKNLEDCARQVDAQTRLIND 467

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703
           LLDIS+I S  + L  +   L   V E +  +++ A E+ +L+     N +  +LAD   
Sbjct: 468 LLDISRITSNTLKLSPQRCELVSLVRETVEDLRVTAPERSLLLEM-PENTLVHVLADRDR 526

Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
           + Q+  N ++NA+ ++     + I  T        + VRD G G++    ++  + F Q+
Sbjct: 527 ISQVVTNYVTNALRYSRPDQPVHIGLTAE-KGVARVWVRDRGPGLSAEAQKEIWQRFHQV 585

Query: 764 PN----------SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
                                     + + ++  + G+  + ST  +G+      P+  
Sbjct: 586 KGVPVQSGSGKGLGLGLY--------ICQMLIAEHQGEVGVESTLGEGSTFWFTLPIVP 636



 Score = 71.2 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 32/361 (8%), Positives = 90/361 (24%), Gaps = 16/361 (4%)

Query: 93  GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH-IDPNNHIGDLLKRQNTWYGKTTLWP 151
           G ++EIS       G    +  G    +             +   +    +      +  
Sbjct: 45  GEVREISPSWHNFTGQEENEYRGKGWLEAFHPADQPQVEEALIQTVISGRSSEHTRRVRR 104

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGI-VHVNRVDNDPRALGKRLDKKFSHLHEI 210
            +G+  Y  I    +P+   +        +G  V    +         +L  K S +  +
Sbjct: 105 YDGS--YRLIHWRLIPVRKPSGAIYELVAYGTDVTEQELAKQMSEAEMQLAVKASGVGLL 162

Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270
                +++    D  +       +   ++   L   +    + +K      L +E+    
Sbjct: 163 DWNLLTLQFVCTDQMAVHLGLSPVTSGSEEQFLACVHPDDREKVKRAHQRAL-TEKRDYS 221

Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330
            +      + + +        + +   +    +      +     +E    +        
Sbjct: 222 IEYRTIWPDGSLHWLIARVQCISDLRGKPIHLIGVGLDVTELKQAEEALRESEARFRHFM 281

Query: 331 IP-----FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
                    V   G +  AN + L L  Y   D        +T+   P        + + 
Sbjct: 282 DSNIIAMALVDLEGTVHEANDALLKLLGYTREDLTAGRMQWTTM--TPPEYRAQDARAIE 339

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
             ++             +  +      +         +   +        +    +  +R
Sbjct: 340 ELQTTGVVQPFEKEY--VAKDGTRVPVLN--GGTLLRRVGSSPLAITFVLDLTARKEVER 395

Query: 446 K 446
           +
Sbjct: 396 Q 396



 Score = 38.5 bits (88), Expect = 5.0,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 65/239 (27%), Gaps = 11/239 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMI--GMRLCDVSDILHIDPNNHIGDLLKRQNTWY-G 145
           +D  G + E ++ L K +G     +    M+   ++   +   +    + L+        
Sbjct: 291 VDLEGTVHEANDALLKLLGYTREDLTAGRMQWTTMTPPEYRAQDARAIEELQTTGVVQPF 350

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFG---IVHVNRVDNDPRALGKRLDK 202
           +      +GT   VP+ L    +  R         F                 LG    +
Sbjct: 351 EKEYVAKDGT--RVPV-LNGGTLLRRVGSSPLAITFVLDLTARKEVERQKDLFLGITSHE 407

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
             + L  ++     +++    + +      P        ++   E  A + D        
Sbjct: 408 LKTPLTALRGTLQLIQRRLKRVVTTADNVSPEWSTFVQGLTKNLEDCARQVDAQTRLIND 467

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
           LL     +    +            ++    L+  + E    L    +  +    D   
Sbjct: 468 LLDISRITSNTLKLSPQRCELVSLVRETVEDLRVTAPERSLLLEMPENTLVHVLADRDR 526


>gi|284038271|ref|YP_003388201.1| PAS/PAC sensor signal transduction histidine kinase [Spirosoma
           linguale DSM 74]
 gi|283817564|gb|ADB39402.1| PAS/PAC sensor signal transduction histidine kinase [Spirosoma
           linguale DSM 74]
          Length = 728

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 92/540 (17%), Positives = 201/540 (37%), Gaps = 40/540 (7%)

Query: 289 FGTLQNNSKESFEYLSHRNHPS----LSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFY 343
             +++N    +F  LS  N  +          E + +     DK     F +   GN  +
Sbjct: 204 PASIRNKDDLTFHMLSAANDRTDTVIAEKTTQESKLIYQSLADKFKQVVFQIDLQGNWSF 263

Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403
            N ++  ++ +   + +            P     +     ++         A A    I
Sbjct: 264 LNEAWERISGFTRAETLG----------RPFSDFMHTENGQLISHVFSENFHAKAGFDRI 313

Query: 404 QWN----RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459
             +       + ++    +   N         G      +     + +      L  I E
Sbjct: 314 TVDCLKKDGGTCSVELSVWLDRNHDGTITGYTGTIIYIAEQPKLHQSIFDGQTLLKEIAE 373

Query: 460 ATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRKP--FTVFLEQNTPSVMNHYLTEI 516
             +  + I +  E   L  N    K  GY ++ +         F+  +       +L ++
Sbjct: 374 NINSIVWIRDPKELKFLYINSYFEKFTGYKIDQLRTDSNSIFKFIHPDDQP----FLMQL 429

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS----LTMHDISEWKQEKNKLS 572
             +  ++ L         ++    L   +  L  +            DI+E K++   L 
Sbjct: 430 YEMPTKKNLAIEFRIKLADQTYRWLEAKLLTLADTEGTIIHRMGIATDITEEKKKVESLQ 489

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN--QRFGPLGNPRYIEYANYI 630
            A +  ++ +  KS F++ VSH+ +TPL+ +    ++I N  Q      +     + N I
Sbjct: 490 LALEQEKEINKLKSMFVSMVSHQFKTPLSTMQTSVDLINNYLQVPSDKSSSSIHRHLNII 549

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI-SLVQLYANEKRILIRTS 689
                   +++ND+L + K+E+GK+ ++ E + L E   + I +        +++ +   
Sbjct: 550 QNEIKKYNNLINDMLILGKVEAGKVKVNLEQIDLVEFCKKIINAYFVDNLQGRKVELNHE 609

Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749
             +    I  D+  ++ + +N+LSNA+ F+    +I++        E++++V D G+G++
Sbjct: 610 KPS--MFIFLDVSLMEHVLVNLLSNALKFSQKNPKIMLELL---ENEIVIKVVDEGIGIS 664

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             ++    + F +   S      G+GLGL +AK  V+   G  ++ S    G+   +  P
Sbjct: 665 KNDVSYLFEDFYRA--SNTSAVPGSGLGLSIAKKFVELQQGTIHVESQLGLGSTFRVALP 722



 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/246 (10%), Positives = 61/246 (24%), Gaps = 11/246 (4%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI-GDLLKRQNTWY 144
            + ID  G    ++E   +  G    + +G    D     +    +H+  +    +  + 
Sbjct: 252 VFQIDLQGNWSFLNEAWERISGFTRAETLGRPFSDFMHTENGQLISHVFSENFHAKAGFD 311

Query: 145 GKTT-LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             T      +G      ++L+     + +   +G+ G   +                   
Sbjct: 312 RITVDCLKKDGGT--CSVELSVWLDRNHDGTITGYTG--TIIYIAEQPKLHQSIFDGQTL 367

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL- 262
              + E       +   K   F   +         K+  L          +  +  P L 
Sbjct: 368 LKEIAENINSIVWIRDPKELKFLYINSYFEKFTGYKIDQLRTDSNSIFKFIHPDDQPFLM 427

Query: 263 ----TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
                  + +L  +      +      +    TL +        +      +      E 
Sbjct: 428 QLYEMPTKKNLAIEFRIKLADQTYRWLEAKLLTLADTEGTIIHRMGIATDITEEKKKVES 487

Query: 319 ENLTPE 324
             L  E
Sbjct: 488 LQLALE 493


>gi|237748247|ref|ZP_04578727.1| two-component hybrid sensor kinase/response regulator [Oxalobacter
           formigenes OXCC13]
 gi|229379609|gb|EEO29700.1| two-component hybrid sensor kinase/response regulator [Oxalobacter
           formigenes OXCC13]
          Length = 692

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 81/255 (31%), Positives = 132/255 (51%), Gaps = 8/255 (3%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           ++   + +  L  A  +A+  ++ K +FL+R+SHEIRTP+  IIG +  I          
Sbjct: 139 LTALSKREADLRDALVLAQNANNAKKEFLSRMSHEIRTPMNGIIGMT-TIAGNYLD--DR 195

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
            R  +    I  S   +L ++ND+LD+SKIE GK+ ++ EP  L   +   IS+V L A 
Sbjct: 196 TRVEDCLAKIAFSSRHLLSLINDVLDMSKIEEGKLAINREPFKLQPFLESVISIVWLQAK 255

Query: 681 EKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH----TSNE 735
           E  +   T+ A+      + D   + QI LN+LSNA+ FT  GG + +         +  
Sbjct: 256 EHGLAFETALADITADTFIGDSMRINQILLNLLSNALKFTLKGGTVRLQVKQFILKNNEV 315

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            +   + DTG+GM+   L +   PF Q P++   +  GTGLG+ + K +V+   G  ++ 
Sbjct: 316 RLRFSISDTGIGMSEEFLSRLFIPFEQAPSTISKKYGGTGLGMAITKNLVNLLGGTIHVK 375

Query: 796 STPAKGTLIEIIFPL 810
           S+P KGT I +  P+
Sbjct: 376 SSPGKGTTITVELPV 390


>gi|260642003|ref|ZP_05414261.2| two-component system sensor histidine kinase [Bacteroides
           finegoldii DSM 17565]
 gi|260623855|gb|EEX46726.1| two-component system sensor histidine kinase [Bacteroides
           finegoldii DSM 17565]
          Length = 862

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 94/534 (17%), Positives = 183/534 (34%), Gaps = 29/534 (5%)

Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANP 346
               ++ N +ES   +  +    +     E  N               Y    ++ + N 
Sbjct: 342 VVWLMRVNRRESKRRIQAQTRLLVQNKLVEQRNEFDNIFHSIRDGVITYDTDLHIHFTNS 401

Query: 347 SFLLLTKYKSVD--DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
           S L +    S     +       ++ +      +   K +    S    +         +
Sbjct: 402 SLLKMLHLPSEAGGRVYEGMMAGSIFNIYNEGQDILHKMLKQVASTGESVQIPQGSFMKE 461

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
            + +    ++       ++               D        E++       ++ +S  
Sbjct: 462 VHSDKYFPVSGEIVPIRSR-GMITGMAFSARNISDE-------EMQKRFFDMAMDESSIY 513

Query: 465 IAIINREGIILSTNRAVSKLFGYPVE--DILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522
               + E       +      GY      I R+     +  +    +       L+ +  
Sbjct: 514 PWQFDVETNCFIFPQGFLTRLGYEESVTIISREDMERTVHPDDLKEVKLLFDRALTGEDT 573

Query: 523 QTLEKITLGSTKEEKLLSLRII---IKKLPFSSCY--SLTMHDISEWKQEKNKLSHAKKI 577
            T          + +          I  L   S Y        I  +K  + ++  A+  
Sbjct: 574 NT-RLNFRQRNADGEYEWWEYRSSVITGLTQDSLYNILGVCQSIQRYKTAEQEMREARDK 632

Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
           A +    KS FLA +SHEIRTPL AI+GFS+++ +            ++   I+++  L+
Sbjct: 633 ALQTDKLKSAFLANMSHEIRTPLNAIVGFSDLLSDT--SGFTTEEVAQFIATINKNCGLL 690

Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN-NIPR 696
           L ++ND+LD+S+IESG M   F   +L   +       +L      + +       +   
Sbjct: 691 LALINDILDLSRIESGTMEFIFAEHNLPLLLKTVHDSQRLNMPP-GVELLLRMPEGDKKY 749

Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIIS-TTHTSNEEVILRVRDTGVGMTNYELEK 755
           +  D   ++Q+  N+++NA  FT SG  I              + V DTGVG++   +  
Sbjct: 750 LQTDNVRLQQVVNNLINNAAKFTFSGS-ITFGYEEEEEPGYTRIFVEDTGVGISEEGIRH 808

Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             + F ++ N      +G GLGL + + +V+   G   + S   KGT   +  P
Sbjct: 809 IFERFYKVDNFT----QGAGLGLSICQTIVERLKGTISVTSEVGKGTRFTVRLP 858



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/192 (12%), Positives = 61/192 (31%), Gaps = 19/192 (9%)

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR-------KMEIEVMQLCS 456
            W +   L +   P   A      +    +   +   RI  +       K+  +  +  +
Sbjct: 319 YWEKYKFLFILLYPSILALLVVSVVWLMRVNRRESKRRIQAQTRLLVQNKLVEQRNEFDN 378

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ-------NTPSVM 509
           I  +  DG+   + +  I  TN ++ K+   P  +   + +   +             ++
Sbjct: 379 IFHSIRDGVITYDTDLHIHFTNSSLLKMLHLPS-EAGGRVYEGMMAGSIFNIYNEGQDIL 437

Query: 510 NHYLTEILSLDLR-QTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWK 565
           +  L ++ S     Q  +   +     +K   +   I  +         + +  +IS+ +
Sbjct: 438 HKMLKQVASTGESVQIPQGSFMKEVHSDKYFPVSGEIVPIRSRGMITGMAFSARNISDEE 497

Query: 566 QEKNKLSHAKKI 577
            +K     A   
Sbjct: 498 MQKRFFDMAMDE 509


>gi|225560357|gb|EEH08639.1| histidine kinase [Ajellomyces capsulatus G186AR]
          Length = 2322

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 73/262 (27%), Positives = 129/262 (49%), Gaps = 12/262 (4%)

Query: 565  KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
            K  + +  H  K+ E  +  KS FLA VSH++RTP+  +IG SE++K        +    
Sbjct: 1788 KVAEAEAKHNVKLKEDAAKAKSIFLANVSHDLRTPMNGVIGLSELLKKTNL----DREQD 1843

Query: 625  EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
             Y   I    + +L ++ND+LD SK+E+GKM +   P++L E ++E +  ++    ++ +
Sbjct: 1844 GYVESIRVCADTLLTLINDILDFSKLEAGKMKVSTVPLNLRETIAEVVRALRYTHRDRGL 1903

Query: 685  LIRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILR- 740
                      P   +L D   + QI +N+LSN+  FTP G   +        +  + +  
Sbjct: 1904 QTIEDLDGVDPNLLVLGDPVRLHQIFMNLLSNSYKFTPKGSVTVKAKAADEDDGRIRITC 1963

Query: 741  -VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA-NMGKFYIFSTP 798
             V DTG+G++  +L +  +PF Q  +S      G+GLGL + KA+++    GK ++ S  
Sbjct: 1964 KVADTGIGISGEQLVRLFRPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGKIWLQSEE 2023

Query: 799  AKGTLIEIIFPLYDTSHPHDCI 820
              GT +        +  P + +
Sbjct: 2024 GVGTTVTFTL--VLSKAPKNAV 2043


>gi|197118872|ref|YP_002139299.1| sensor histidine kinase response receiver domain-containing protein
           [Geobacter bemidjiensis Bem]
 gi|197088232|gb|ACH39503.1| sensor histidine kinase response receiver domain protein, HAMP
           domain-containing protein [Geobacter bemidjiensis Bem]
          Length = 1362

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 77/247 (31%), Positives = 127/247 (51%), Gaps = 3/247 (1%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E  +    L   K+  E+ +  KS+FL+ +SHE+RTPL +++  S V+  Q    L    
Sbjct: 564 ELSRHNQVLDLQKQQLEEATRLKSEFLSNMSHELRTPLNSVLALSRVLAVQGGSRLTEDE 623

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
              Y + I+R+G  +L ++ND+LD++KIESG+  ++ E VSL +  +E +  + + A EK
Sbjct: 624 -KGYLSIIERNGKHLLSLINDILDLAKIESGRQEVYLETVSLQKVTAEVVDGLSVLAREK 682

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
            I I       +P  + D++ ++Q+  N++ NA+ FT  G  + +       EE ++ V 
Sbjct: 683 GIAISLEAPEALPTAVIDVKRLRQMLQNLIGNAVKFTAEGA-VTVRLGAE-GEEFLVEVE 740

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG+G+    LE     F Q   S     EGTGLGL + K       G   + S   KG+
Sbjct: 741 DTGIGIAPQYLETIFHEFRQADGSTSRSFEGTGLGLAIVKKTARLLGGDVSVRSELGKGS 800

Query: 803 LIEIIFP 809
           +  +  P
Sbjct: 801 VFTLRLP 807


>gi|222054349|ref|YP_002536711.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           FRC-32]
 gi|221563638|gb|ACM19610.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           FRC-32]
          Length = 786

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 78/492 (15%), Positives = 177/492 (35%), Gaps = 45/492 (9%)

Query: 334 FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393
            +   G    A+P+   +    S D+++               +      +     D   
Sbjct: 267 LISFEGTFLLASPASSHVLGIPS-DELKGRRLTDFGF------ETRRDGNLSFIPEDGKV 319

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
                    +  +      + +     +++         +  +  + ++   ++  E  +
Sbjct: 320 SPICFEKKYMPSHG-PERWLQWHLQPDSDEKILY----AMVADVTEQKMVAEELLDERNK 374

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
           L +IL    DG++I + +  I   N    KL+G  + +   + +    +  +   +   +
Sbjct: 375 LEAILSCLGDGLSIRDTDHRIAYQNHIHKKLYGDHIGEYCYRVYEGQSQVCSSCPVAMAI 434

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKN 569
            ++      +T+E+             + I    L   S   +     + DIS  K+ + 
Sbjct: 435 QDLQVHSAVRTVEQ-------NGFKKHVEITASPLKDGSGAVVGAIEAVRDISARKEAEE 487

Query: 570 KLSHAKKIAEKESSHKSD-----------FLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
           ++       E+  + +++           F   VSH++R+PL  I G+S+++       L
Sbjct: 488 EILRLNAELEQRVAERTERLAEACRELESFSYSVSHDLRSPLRTIYGYSQLLLEDCSEHL 547

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
            + +  +Y   I   G  +  I++ +LD S+I  G+  L  E V L E      + + + 
Sbjct: 548 -DDQGRKYVEVIANGGRRMEQIIDAMLDFSRI--GRRELRHEDVDLSELAIVVTAELHIT 604

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT--PSGGQIIISTTHTSNEE 736
             E+ +        N   +  D   ++ +  N+  NA  +T      +I  S+    N  
Sbjct: 605 CPERNVSFIID---NGMVVKGDPSLLRSVMENLFGNAWKYTSKEPDTRIEFSSRVE-NGS 660

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
            +  +RD G G      +K   PF ++ +  +    G G+GL   + ++  + G+ +  S
Sbjct: 661 TVFLIRDNGAGFNMAHADKLFAPFQRLHS--EHEFPGNGIGLATVQRIIQRHGGRIWAES 718

Query: 797 TPAKGTLIEIIF 808
           +P  G       
Sbjct: 719 SPGDGASFYFTL 730



 Score = 47.3 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 28/264 (10%), Positives = 60/264 (22%), Gaps = 14/264 (5%)

Query: 65  TNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI 124
           T     +N F   P    +     I   G     S      +G  + ++ G RL D    
Sbjct: 249 TAEQVIKNVFNLSPGMLGL-----ISFEGTFLLASPASSHVLGIPSDELKGRRLTDFGFE 303

Query: 125 LHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIV 184
              D N        + +    +    P  G      +     P             + +V
Sbjct: 304 TRRDGNLSFIPEDGKVSPICFEKKYMPSHGP--ERWLQWHLQPDSDEK------ILYAMV 355

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244
                             K   +        S+    + I  Q      L   + +    
Sbjct: 356 ADVTEQKMVAEELLDERNKLEAILSCLGDGLSIRDTDHRIAYQNHIHKKL-YGDHIGEYC 414

Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
                    + +     +  ++  +         N  +   +     L++ S      + 
Sbjct: 415 YRVYEGQSQVCSSCPVAMAIQDLQVHSAVRTVEQNGFKKHVEITASPLKDGSGAVVGAIE 474

Query: 305 HRNHPSLSAYFDEGENLTPETVDK 328
                S     +E        +++
Sbjct: 475 AVRDISARKEAEEEILRLNAELEQ 498


>gi|39937307|ref|NP_949583.1| two component low oxygen sensor histidine kinase [Rhodopseudomonas
           palustris CGA009]
 gi|39651165|emb|CAE29688.1| two component low oxygen sensor histidine kinase with PAS domains,
           fixL [Rhodopseudomonas palustris CGA009]
          Length = 508

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 82/527 (15%), Positives = 194/527 (36%), Gaps = 31/527 (5%)

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDIEIA 363
                  S      +    + +D   +  +  +        + +   L    +   +   
Sbjct: 1   MTEPAPPSTELLARDRRLQQGIDGYGVGTWELNLATQELACSATARKLLGVPADASLTYD 60

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
             +S  L  P   +  A+  +         I     ++ +      S  +          
Sbjct: 61  TFIS--LVDPDDREQIAL-ALQQSIEHGDKIDV---MYRVAEKDRPSHWL--RARGGVVH 112

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
                   GI  +    ++ ++++ ++  QL SIL+   D + +I+  GI+   +RA  +
Sbjct: 113 EDGASYLCGIVLDIDQQKVLEQELRLQQGQLRSILDTVPDAMILIDGRGIMRFFSRAAER 172

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT--LEKITLGSTKEEKLLSL 541
           +FG    + + +  +V + +   +  ++Y+    +   R    + +I  G  K+     +
Sbjct: 173 MFGMSEREAIGQNISVLMPRPDATRHDNYIDRYNNTGERHIIGIGRIVTGRRKDGSTFPI 232

Query: 542 RIIIKKLP--FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS--HKSDFLARVSHEIR 597
            + I ++       ++  + D++E++Q + +L   +      S      +  + ++HE+ 
Sbjct: 233 HLSIGEMESGGERYFTGFIRDLTEYQQTQARLHELQAELVHVSRLTAMGEMASALAHELN 292

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYI--EYANYIDRSGNLVLDIVNDLLDI-SKIESGK 654
            PL+AI  + +  +    G                         I+  L D  ++ ES  
Sbjct: 293 QPLSAISNYMKGSRRLLAGSTDPNTVKIESAMERAAEQALRAGQIIRRLRDFVARGES-- 350

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714
                   SL + + EA +L    A E+ +++R +       +L D   ++Q+ +N+  N
Sbjct: 351 ---EKRVESLAKLIEEAGALGLTGAREQGVVLRFNLDPAHDLVLVDRVQIQQVLVNLFRN 407

Query: 715 AIHFTPSGGQIIIST--THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           A+    +  +  +S      +++ V + V DTG G+      K  + F     +      
Sbjct: 408 ALEAMANSDKKELSAGNARVADDMVEVTVSDTGSGLPEQVKAKLFQTFFTTKET------ 461

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819
           G G+GL +++++++A+ G+ +  +  A G       PL       D 
Sbjct: 462 GMGVGLSISRSIIEAHGGRMWAETNSAGGATFRFTLPLAPVGDLTDA 508



 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/211 (7%), Positives = 47/211 (22%), Gaps = 8/211 (3%)

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE--YLS 304
               D                 +         +   +  +   G +  +         L 
Sbjct: 66  VDPDDREQIALALQQSIEHGDKIDVMYRVAEKDRPSHWLRARGGVVHEDGASYLCGIVLD 125

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIA 363
                 L       +      +D  P     +   G + + + +   +      + I   
Sbjct: 126 IDQQKVLEQELRLQQGQLRSILDTVPDAMILIDGRGIMRFFSRAAERMFGMSEREAIGQN 185

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
             +S L+  P  + ++          +R  I     +   + +                +
Sbjct: 186 --ISVLMPRPDATRHDNYIDRYNNTGERHIIGIGRIVTGRRKDGSTF---PIHLSIGEME 240

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
                   G   +  + +  + ++     +L
Sbjct: 241 SGGERYFTGFIRDLTEYQQTQARLHELQAEL 271



 Score = 39.2 bits (90), Expect = 3.1,   Method: Composition-based stats.
 Identities = 31/244 (12%), Positives = 63/244 (25%), Gaps = 16/244 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN----NHIGDLLKRQNTWY 144
           ID  G ++  S    +  G    + IG  +  +        +    +   +  +R     
Sbjct: 157 IDGRGIMRFFSRAAERMFGMSEREAIGQNISVLMPRPDATRHDNYIDRYNNTGERHIIGI 216

Query: 145 GKTTL-WPIEGTNLYVPIDLA-ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
           G+       +G+    PI L+         R F+GF     +         +A    L  
Sbjct: 217 GRIVTGRRKDGSTF--PIHLSIGEMESGGERYFTGF-----IRDLTEYQQTQARLHELQA 269

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
               L  + +  +  E           P   +    K S      +   + +K E     
Sbjct: 270 ---ELVHVSRLTAMGEMASALAHELNQPLSAISNYMKGSRRLLAGSTDPNTVKIESAMER 326

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
            +E++    Q      +     + +          E    L                +  
Sbjct: 327 AAEQALRAGQIIRRLRDFVARGESEKRVESLAKLIEEAGALGLTGAREQGVVLRFNLDPA 386

Query: 323 PETV 326
            + V
Sbjct: 387 HDLV 390


>gi|289550735|ref|YP_003471639.1| Staphylococcal respiratory response protein SrrB [Staphylococcus
           lugdunensis HKU09-01]
 gi|289180267|gb|ADC87512.1| Staphylococcal respiratory response protein SrrB [Staphylococcus
           lugdunensis HKU09-01]
          Length = 588

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 68/395 (17%), Positives = 156/395 (39%), Gaps = 34/395 (8%)

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII 474
                  ++  E            + + N + +        S++ + ++G+  IN    I
Sbjct: 226 ISSVTTKDEIGELSRALNDMS--FEIQENVQALSTSKNIRDSLINSMAEGVVGINDHRDI 283

Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
           + +N+   ++                ++Q+    +   + +  +    +   +     T+
Sbjct: 284 ILSNKMADEIL-------------PTIDQSMYERIEDQIEDTFTSKGTEF--REYDFDTR 328

Query: 535 EEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
               +   I   +    S   + + D++                      K DF+A VSH
Sbjct: 329 YYVFIMSYIPQIQEDGRSGIVVIIRDMT--------------NEHNLDQMKKDFIANVSH 374

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           E+RTP++ + G++E I +            E  + +    N +  +VN+LL+++++++  
Sbjct: 375 ELRTPISLLQGYTESIVDGIVTE--PEEIKESLSIVLDETNRLNRLVNELLNVARMDAEG 432

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714
           ++++ E   +   +++  +  +  A++  + +  +   N      D   + Q+  N++ N
Sbjct: 433 LSVNKEIQPIAPLLNKIQTKYRQQASDLSLNMYLTPETNDALWYYDSDRIDQVLTNLIDN 492

Query: 715 AIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           A  +T  G  I I++  T    V L + DTG G+    L      F ++  S+    +GT
Sbjct: 493 ATRYTQPGDTISITSEDTDKYNV-LHINDTGSGIAPEHLNLVFDRFYKVEASRTRGKQGT 551

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GLGL + K +++ + G   + S   +GT   I  P
Sbjct: 552 GLGLFICKMIIEEHGGTITVSSVVGEGTTFTIKLP 586


>gi|256784827|ref|ZP_05523258.1| sensory histidine kinase [Streptomyces lividans TK24]
          Length = 1792

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 121/739 (16%), Positives = 256/739 (34%), Gaps = 58/739 (7%)

Query: 120  DVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFR 179
            D++  + I+    +  L    NT     TL         V  ++    I     +  G  
Sbjct: 858  DLTRTVTIEARGEVAQLADTFNT--MVRTLRSFADQVTKVAREVGTDGILGGQAQVPGVS 915

Query: 180  GFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK 239
            G           +  A       +   +         + K K DI ++          N 
Sbjct: 916  G--TWKDLTESVNQMASNLTGQVRNIAMVTTAIAKGDLTK-KIDIDARGEILELKTTINT 972

Query: 240  VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
            +      +A +   +  E          +     D    +L +   +      +     +
Sbjct: 973  MVDQLSSFAEEVTRVAREVGTEGQLGGQARVRDVDGTWRDLTESVNEMAGNLTRQVRAIA 1032

Query: 300  FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTK------ 353
                +            +      E  D             +  AN     L        
Sbjct: 1033 RVATAVTRGDLNLKIDVDASGEISELQDYINKMIANLRDTTI--ANKEQDWLKGNLARIS 1090

Query: 354  --YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIA-ASARLHTIQWNRENS 410
               +   D++    L      P +S  +    + +   D    A A    + ++      
Sbjct: 1091 GLMQGRRDLQDVASLIMSELTPVVSAQHGAFFLAMPLVDGQEQAGAEGDAYELRMLGSYG 1150

Query: 411  LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470
             +M  +P                +   +        ++I       + EA    + ++  
Sbjct: 1151 YSMGSMPTSFRPGEALVGTAAQEKRTILVENAPSGYLKISS----GLGEAPPAQVIVLPV 1206

Query: 471  --EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY-----LTEILSLDLRQ 523
              EG +L       +L  +     ++K F   + +   + +N          +LS     
Sbjct: 1207 LFEGQVLGV----IELASFTPFTHIQKDFLNQIAEMIATSVNTISVNTKTEVLLSQSQEL 1262

Query: 524  TLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT-MHDI----SEWKQEKNKLSHAKKIA 578
            T +        E++  +L+    +L   +        DI    +E ++ +  L    +  
Sbjct: 1263 TEQLRERSEELEQRQKALQSSNAELEEKAELLAQQNRDIEVKNTEIEEARQVLEERAEQL 1322

Query: 579  EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
                 +KS+FLA +SHE+RTPL +++  ++++ +     L  P+ +E+A  I  +G+ +L
Sbjct: 1323 AVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNADANLT-PKQVEFAETIHGAGSDLL 1381

Query: 639  DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RI 697
             ++ND+LD+SK+++GKM++    ++L + V    +  +  + EK + +    +  +P  +
Sbjct: 1382 QLINDILDLSKVDAGKMDVSPTRIALVQLVDYVEATFRPLSAEKGLDLSVRVSPGLPATM 1441

Query: 698  LADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHT-------------------SNEEV 737
              D + + Q+  N+LSNA+ FT SG  +++I                          E +
Sbjct: 1442 HTDEQRLLQVLRNLLSNAVKFTDSGSVELVIRPARDEVPTAIREQLLEAGSMNDPDAELI 1501

Query: 738  ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
               V DTG+G+   +++   + F Q   +   +  GTGLGL +++ +     G+ +  S 
Sbjct: 1502 AFSVSDTGIGIAASKMQVIFEAFKQADGTTSRKYGGTGLGLSISREIAQLLGGEIHAQSE 1561

Query: 798  PAKGTLIEIIFPLYDTSHP 816
            P +G+   +  PL+ +  P
Sbjct: 1562 PGRGSTFTLYLPLHPSELP 1580


>gi|77460432|ref|YP_349939.1| periplasmic sensor hybrid histidine kinase [Pseudomonas fluorescens
           Pf0-1]
 gi|77384435|gb|ABA75948.1| putative two-component sensor kinase and response regulator
           [Pseudomonas fluorescens Pf0-1]
          Length = 633

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 72/255 (28%), Positives = 128/255 (50%), Gaps = 11/255 (4%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E  Q   +L   ++ AEK ++ KSDFLA +SHE+RTP+  ++G  ++++           
Sbjct: 242 EQHQAMAQLIQTREEAEKANNAKSDFLAMMSHELRTPMNGVLGMLQLLETTDM----TEE 297

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
            +EYA     S   +L ++ND+LD S+IE  ++ L   P +L E +       Q  A ++
Sbjct: 298 QVEYAALASESTEHLLKVINDILDFSRIERSELELEHIPFNLAEVIGACAQSFQHSAAQR 357

Query: 683 RILIRTSFANNI--PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT--SNEEVI 738
            + ++     ++   ++  D   ++QI +N++ NA+ FT  G ++ I        +E + 
Sbjct: 358 GLALQLRIPEDLRDLQVQGDPTRIRQILVNLVGNALKFTEQG-RVSIEAQWQSLDHELLW 416

Query: 739 LR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
               VRD+G+G++   LE     F Q  +S   R  GTGLGLP+A+ + +   G     S
Sbjct: 417 FTCAVRDSGIGISPESLELMFNAFQQADSSISRRYGGTGLGLPIARTLAERMGGTLRAQS 476

Query: 797 TPAKGTLIEIIFPLY 811
              +G++  +  PL 
Sbjct: 477 EEGRGSVFTLEIPLA 491


>gi|294788093|ref|ZP_06753337.1| phosphate regulon sensor kinase PhoR [Simonsiella muelleri ATCC
           29453]
 gi|294484386|gb|EFG32069.1| phosphate regulon sensor kinase PhoR [Simonsiella muelleri ATCC
           29453]
          Length = 424

 Score =  278 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 76/379 (20%), Positives = 148/379 (39%), Gaps = 37/379 (9%)

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
              +  +    + +K+K+   + +L  I EA  +G+ ++++ G +   N++ ++      
Sbjct: 73  FETLLRQTKSRKKSKQKLANALTRLNRIAEAMPNGVILLDKLGKLEWLNQSAAQHLQLNP 132

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
                  F   +E +  +     L +           +             + I   KL 
Sbjct: 133 HTDRDSVFKDLIELSELNQFLEDLDDKQPEKTFSLHNR------------PILISKTKLE 180

Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                 L   D+S               +E+ +  ++DF+A VSHE+RTPLT + GF E 
Sbjct: 181 NEK-LLLVTQDMS--------------ASEQLNQTRADFVANVSHELRTPLTVLSGFVET 225

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES-GKMNLHFEPVSLDEAV 668
           + +     L N +  E+   + +    +L+++ DLL +S++E   + +   + V L E  
Sbjct: 226 LSD--MPDLPNEQRQEFLALMQQENKRMLNLIKDLLILSRLEHVQQDDKDKQAVDLSELA 283

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQII 726
                  +  +  K          NI    +L D   ++    N++ NA+ +TP GG I 
Sbjct: 284 RHIALDGKALSQGKH-DFILEIEPNIWITGVLLD---LQNALSNLVFNAVRYTPDGGNIR 339

Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
           +             V DTGVG+    + +  + F ++   +     GTGLGL + K  + 
Sbjct: 340 V-VLRQDGTHATFSVTDTGVGIAPEHIPRLTERFYRVDKGRSRETGGTGLGLAITKHALA 398

Query: 787 ANMGKFYIFSTPAKGTLIE 805
            +     I S   +G+   
Sbjct: 399 KHGAILQIESRVGEGSTFS 417


>gi|88799412|ref|ZP_01114990.1| hypothetical tryptophan-rich sensor protein [Reinekea sp. MED297]
 gi|88777951|gb|EAR09148.1| hypothetical tryptophan-rich sensor protein [Reinekea sp. MED297]
          Length = 888

 Score =  278 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 109/564 (19%), Positives = 207/564 (36%), Gaps = 56/564 (9%)

Query: 277 TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY 336
            +  +          L N+ +     L   +  S  +   E +      V       +V 
Sbjct: 227 RLAESLRDTFDEIVDLNNSMRSLLTVLPDVDEESFFSIAAELQGYDSPFVSFVSWSDWVP 286

Query: 337 SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY--------- 387
               + Y N     +   +  D       ++ L+    L   +  + V            
Sbjct: 287 EDRRIAYENQFNCEINPIREEDTYSDPSDINVLIPVRYLYPASVTEQVRCRDLAAEPQRR 346

Query: 388 ----RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
                + +T     +    +  ++   L +    ++        +         + + I+
Sbjct: 347 RALFIAIQTGNPYLSDPIALAADQGPGLILFTPAYDDYADPVGVIASVIEIESLLQSSIS 406

Query: 444 KRKME---IEVMQLC-----SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
              ++   +E+ QL      +I E + +G+A +           A  +           +
Sbjct: 407 DNNLQSSWLEIQQLNDQSETTIYEQSPNGLAGL----------AAFGRSLNLSFYGQSWR 456

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555
                +      +    +T ++++     L    +                    +   +
Sbjct: 457 IHWRPMLSEFSRIFAWQITLVIAIASVAVLLIQFIAFR-----------------TGTLT 499

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
             + +  E K   N L++A++ AE+ +  KS FLA +SHEIRTPL AIIGF+E+ +++  
Sbjct: 500 EVIQEEVERKT--NDLTNAQQAAEQATIAKSQFLANMSHEIRTPLNAIIGFAELAQDESN 557

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
                     +   I  S   +L +VND+LD SK+E+GK+ LH  P SL E      S+ 
Sbjct: 558 LMT----IQSHLKGISSSSEALLGLVNDVLDYSKLEAGKLELHRAPFSLQELAKRLRSIF 613

Query: 676 QLYANEKRILIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTS 733
           +  A  + +  R          I++D   ++QI +N+ SNAI FT  G   + +      
Sbjct: 614 ETQARARGLSFRIDVDCPANKDIVSDETRLQQILINLCSNAIKFTRHGDIHVQMQVLEEQ 673

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
             +++L V+DTG+GMT  E  +    F Q  +S      GTGLGL +   + +   G+  
Sbjct: 674 ETQLMLVVKDTGIGMTESERARIFDQFTQADSSITRHYGGTGLGLSITMTLTELLDGQVM 733

Query: 794 IFSTPAKGTLIEIIFPLYDTSHPH 817
           + S    G+   I  P+   +   
Sbjct: 734 VESEQGVGSQFTIRLPVSLQASEQ 757


>gi|209966659|ref|YP_002299574.1| histidine protein kinase DivJ [Rhodospirillum centenum SW]
 gi|209960125|gb|ACJ00762.1| histidine protein kinase DivJ [Rhodospirillum centenum SW]
          Length = 710

 Score =  278 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 129/634 (20%), Positives = 232/634 (36%), Gaps = 32/634 (5%)

Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255
           +   L +    L    + ++  +    ++     P    R        +   A    V  
Sbjct: 93  VEVALAQAERALGNNVRDYALWDDAVTNLLVAPDPGWARRNLGASLDASFGIAATAVVDD 152

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
             +  LL  + + + +               +           +   + H   P+L+A  
Sbjct: 153 AGRIALLLEQGTLVADLTGTPADPAIIALAARARSVPARTDDPATGIVLHHGRPALAAAA 212

Query: 316 DEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
           D       +     P    V             +   +   ++ +     L  L   P  
Sbjct: 213 DIRWERWED--RPAPGAVLV------------MIQPLEGTMLERLAAPLMLGPLRFEPAG 258

Query: 376 SDNNAIKP--VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
           +  +A  P  + L  +D                        F+    A            
Sbjct: 259 TATDAAIPVGLALATADGRPAGLLIWSPPAPARDFLGRTGWFLFGIIAAMVGLTALFLAR 318

Query: 434 EPEDVDTRINKR-KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG-YPVED 491
                   +     +     +   +L+A  D +A++ R+G I+  N     L G    E+
Sbjct: 319 AQASAAEGVEMANALRHSEDRYRRLLQALPDMVALL-RDGRIMLMNPGGGGLLGLRDPEE 377

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
           +L +PF   L ++  +     +  + +    + +   T     +   L + + +  +   
Sbjct: 378 VLDRPFADLLTESERAGFR--IMAVQAAQESRPVWCSTALLRADGTALPVDLALLAVADG 435

Query: 552 SC--YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
           +     +   D+SE    + +L   +  AE+    +S FL+ V HE+RTPL AIIGFSE+
Sbjct: 436 NGPLLLVLARDLSELSGLRERLQEVEAAAERAGRARSRFLSAVGHELRTPLNAIIGFSEI 495

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           ++++  G LGN RY +YA  I   G  +L + NDL+D+++IE+G+++L      +   V 
Sbjct: 496 LRDELLGSLGNNRYRDYAQDIHDGGLHLLRLTNDLVDLARIEAGQLDLRESWTDVQGLVD 555

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
             + L    A    + +         R+LAD   ++QI  N+L NAI  +  G  + +  
Sbjct: 556 RCLRLGATRAAGLGVTLGADIRPPGLRVLADEARLRQILANLLDNAIRHSERGSHVQVRA 615

Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT------GLGLPLAKA 783
           +        L+V D GVGMT  E+  A++PF           EGT      GLGLPL + 
Sbjct: 616 SGE-GGIFTLQVADQGVGMTEKEVRAALRPF--GEAPAAGEAEGTARQTAPGLGLPLVRG 672

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
            V+A+ G   I S P  GT + +  P      P 
Sbjct: 673 YVEAHGGHLAIASDPGAGTTVTVTLPRGRIYLPE 706



 Score = 38.1 bits (87), Expect = 6.5,   Method: Composition-based stats.
 Identities = 22/250 (8%), Positives = 54/250 (21%), Gaps = 18/250 (7%)

Query: 91  AHGYLKEISEELPKTIGNY-AFKMIGMRLCDVSDILHIDPNN--HIGDLLKRQNTWYGKT 147
             G +  ++      +G     +++     D+             +    + +  W   T
Sbjct: 355 RDGRIMLMNPGGGGLLGLRDPEEVLDRPFADLLTESERAGFRIMAVQAAQESRPVWCS-T 413

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
            L   +GT   +P+DLA L +   N          +       +  R   + ++      
Sbjct: 414 ALLRADGTA--LPVDLALLAVADGNGPLL----LVLARDLSELSGLRERLQEVEAAAERA 467

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT--------EYYAHKDDVLKTEKY 259
              +    S    +              +++++                H   +      
Sbjct: 468 GRARSRFLSAVGHELRTPLNAIIGFSEILRDELLGSLGNNRYRDYAQDIHDGGLHLLRLT 527

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
             L         Q D      +          L              +           E
Sbjct: 528 NDLVDLARIEAGQLDLRESWTDVQGLVDRCLRLGATRAAGLGVTLGADIRPPGLRVLADE 587

Query: 320 NLTPETVDKC 329
               + +   
Sbjct: 588 ARLRQILANL 597


>gi|166364910|ref|YP_001657183.1| two-component hybrid histidine kinase [Microcystis aeruginosa
           NIES-843]
 gi|166087283|dbj|BAG01991.1| two-component hybrid histidine kinase [Microcystis aeruginosa
           NIES-843]
          Length = 669

 Score =  278 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 72/247 (29%), Positives = 137/247 (55%), Gaps = 8/247 (3%)

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + + +L  AK+ A K +  KS+FLA +SHE+RTPL AI+GF+ +I         +  Y
Sbjct: 186 RYEAEKELKEAKEAAVKANKAKSEFLANMSHELRTPLNAILGFTRLISRD---SSISSEY 242

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            +Y   ++RSG  +L+++ND+L++SKIE+G+   +     L   +     +++  A  K 
Sbjct: 243 RQYLEIVNRSGEHLLELINDILEMSKIEAGRTVFNPSNFDLYALLDNIAEMLRSQAQAKA 302

Query: 684 ILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVIL 739
           + +    ++++P+ I  D   ++Q+ +N+L N + FT SGG   ++ +      ++ ++ 
Sbjct: 303 LSLIFDRSSDLPQYICTDESKLRQVLINLLGNGLKFTESGGVTLRVKLGEKREDDQRLLW 362

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            + DTG+G+   E+ K  +PF Q    ++ + +GTGLGLP++K  V+   G   + S   
Sbjct: 363 EIEDTGLGIAPEEIYKLFQPFNQTETGRKSQ-QGTGLGLPISKKFVELMGGAIGVSSILG 421

Query: 800 KGTLIEI 806
           +G++   
Sbjct: 422 QGSIFSF 428


>gi|312960833|ref|ZP_07775338.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens
           WH6]
 gi|311284491|gb|EFQ63067.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens
           WH6]
          Length = 1165

 Score =  278 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 108/639 (16%), Positives = 227/639 (35%), Gaps = 42/639 (6%)

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS-SLTE 245
              +       KRL+      +   +    ++++  D           R+ +++     +
Sbjct: 105 VADNPQQVDRLKRLEALQLEWNNYAQSMIDLQRQSGDYRGAVKAGRGKRLTDEIRKEYED 164

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
             A +          +  +   S+     F  + L+ +        L   S+     L+ 
Sbjct: 165 AVAMEQQFRIARNQDVTRTTVISVTLYLVF-VLGLSGFLAYIGRKNLVALSESYSANLAS 223

Query: 306 RNHPSLSAYFDE-GENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDI--EI 362
           +   +          N   E  ++      +   G        F       +V  +    
Sbjct: 224 QQKIARRLEQQAWLRNGQTELAEQVLGQLTLNMLGRNIL---QFFAQYMGSAVAALYVRE 280

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
             G    +     S +       +Y  +     A+     I+ +                
Sbjct: 281 EHGGLKRVATYGFSRDQEQLEQAIYSDEGIVGQAAQLDRLIRLDDVPVDYFKVSSGLGEG 340

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
                +     + + V+  I    +     +   +LE  +         G I        
Sbjct: 341 TPRSVLVVPTSDDDRVNGVIELGFLRTLQERDVELLELIA---------GNI-------- 383

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYL--TEILSLDLRQTLEKITLGSTKEEKL-- 538
              G  +E    +     +   T  +        E L     +  E+  +    +  L  
Sbjct: 384 ---GTSIEAARYRQRLQEVLAETQQLNEELQVQQEELKTANEELEEQSRILKESQAHLET 440

Query: 539 --LSLRIIIKKLPFSSCYSLTMHDISEWK-----QEKNKLSHAKKIAEKESSHKSDFLAR 591
               L    ++L   +       D  + K     Q + +L    +  ++ S +KS+FLA 
Sbjct: 441 QQAELEQTNEQLAEQTQTLAEQRDAMDRKNGELNQAQQELEDRAEELQRSSKYKSEFLAN 500

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           +SHE+RTPL + +  ++++       L     +++A  I  +GN +L+++ND+LDISK+E
Sbjct: 501 MSHELRTPLNSSLILAKLLAENPQENLSAE-QVKFAESIYSAGNDLLNLINDILDISKVE 559

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALN 710
           +GK+ +  +  S+   V     + +  A ++++  +     + P  +  D + ++QI  N
Sbjct: 560 AGKLEVRPDNSSVARLVDGLRGMFEPLAADRKLGFQVQVQPDAPAMLFTDRQRLEQILKN 619

Query: 711 ILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           +LSNAI FT  G ++ +S +    E +   VRD+G+G+   + +   + F Q   +   R
Sbjct: 620 LLSNAIKFTEQG-EVSLSVSRAPGEGIAFSVRDSGIGIAPDQQQSIFEAFRQADGTTNRR 678

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             GTGLGL +++ +     G   + S P KG+   ++ P
Sbjct: 679 YGGTGLGLSISRDLAALLGGYISVTSAPGKGSTFTLVLP 717


>gi|240140250|ref|YP_002964728.1| two component low oxygen sensor histidine kinase with PAS domains,
           FixL [Methylobacterium extorquens AM1]
 gi|240010225|gb|ACS41451.1| two component low oxygen sensor histidine kinase with PAS domains,
           FixL [Methylobacterium extorquens AM1]
          Length = 515

 Score =  278 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 70/447 (15%), Positives = 159/447 (35%), Gaps = 23/447 (5%)

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
                      +     D        R   +         +      + +         G
Sbjct: 75  HPDDRQARAHAIESVLRDGGSYEIEYR---VVLPNGRGGWLRSRGQVQLDAEGRPHRHRG 131

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
           +     + +  + ++      L SIL+   + + +I+  G+I S N A  +LFGY   + 
Sbjct: 132 VVFSIEEQKQVEAELRAREAHLRSILDTMPEAMVVIDEAGLIHSFNPAAERLFGYAAGEA 191

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPF 550
           + +   + + +   +     L        R  +   +   G   +     + + I ++  
Sbjct: 192 IGQDVRILMPEAMQNGHAADLERYRQTRQRHIIGTTRCVTGRRHDGSTFPMELAIGEMHS 251

Query: 551 SSC--YSLTMHDISEWKQEKNKLSHAKKIAEKESS--HKSDFLARVSHEIRTPLTAIIGF 606
                ++  ++D++  ++ + +L   +      S      +    ++HE+  PL AI  +
Sbjct: 252 GERTFFTGFINDLTAQRRTEARLQELQSELGHVSRLSAMGEMATTLAHELNQPLGAITNY 311

Query: 607 SEVIKN--QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           +   +       P    R  E  +           I+  L +   +  G+     EPV  
Sbjct: 312 TNGCRRLLAHPDPETIARAQEVLDKAAEQALRARQIIARLREF--VARGETEKRIEPV-- 367

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724
              + EA +L    A E+ I         +  +L D   V+Q+ +N++ NA        +
Sbjct: 368 ATMIEEAGALTLAAAGEQGITAHVVPDPRVGSVLVDRVQVQQVLVNLMRNACEAMQRSSR 427

Query: 725 --IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
             + ++T   S +   + V DTG G+     ++  +PF    ++      G G+GL +++
Sbjct: 428 RELTVATRRVSPDLAEVAVSDTGPGIAEEVADRLFQPFVTTKDA------GMGVGLSISR 481

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFP 809
            +++A+ G+ ++    A G    +  P
Sbjct: 482 TIIEAHGGRLWVEPNAAGGATFRLTLP 508



 Score = 47.3 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 38/252 (15%), Positives = 72/252 (28%), Gaps = 20/252 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G +   +    +  G  A + IG  +  +        N H  DL + + T      
Sbjct: 167 IDEAGLIHSFNPAAERLFGYAAGEAIGQDVRILMPE--AMQNGHAADLERYRQTRQRHII 224

Query: 149 LWPIEGTNLYV-----PIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                 T         P++LA   ++S  R F  F GF  ++         A  + L  +
Sbjct: 225 GTTRCVTGRRHDGSTFPMELAIGEMHSGERTF--FTGF--INDLTAQRRTEARLQELQSE 280

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
             H+  +         E     + +   P   + N  +      AH D         +L 
Sbjct: 281 LGHVSRLSA-----MGEMATTLAHELNQPLGAITNYTNGCRRLLAHPDPETIARAQEVLD 335

Query: 264 SEE----SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
                   +               T+K+         +     L+      ++A+     
Sbjct: 336 KAAEQALRARQIIARLREFVARGETEKRIEPVATMIEEAGALTLAAAGEQGITAHVVPDP 395

Query: 320 NLTPETVDKCPI 331
            +    VD+  +
Sbjct: 396 RVGSVLVDRVQV 407


>gi|39933394|ref|NP_945670.1| sensor histidine kinase [Rhodopseudomonas palustris CGA009]
 gi|39653019|emb|CAE25761.1| sensor histidine kinase with a response regulator receiver domain
           [Rhodopseudomonas palustris CGA009]
          Length = 636

 Score =  278 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 75/248 (30%), Positives = 119/248 (47%), Gaps = 5/248 (2%)

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
             L  A++ A+  +  KS  LA  SHEIRTPL  IIG S ++ +             YA 
Sbjct: 107 RALIAARESADAANHAKSRLLAMASHEIRTPLNGIIGMSRLLLDTPLSA----EQATYAK 162

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            +  SG  +L + ++LLD ++IE+GK+ L   P  L   + + I L+   A  + + I  
Sbjct: 163 AVKTSGEALLALTDELLDYARIEAGKIELDCRPFVLSSLIEDIIELLAPRAQARGLEIAA 222

Query: 689 SFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747
                +P  ++ D   ++Q+ LN+  NAI FT +GG  +I      + E+ + VRDTG+G
Sbjct: 223 DIDERLPVSLIVDAARLRQVLLNLCGNAIKFTETGGVALIVERGDQSGELRIIVRDTGIG 282

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           +      +    F Q          GTGLGL ++  +V A  G+  + S P +G+   I 
Sbjct: 283 IAPDAQARIFHEFEQADAGIARNFGGTGLGLSISDRIVAAMGGRIALESKPGEGSTFTIT 342

Query: 808 FPLYDTSH 815
            PL    +
Sbjct: 343 LPLSTAEN 350


>gi|159029098|emb|CAO90087.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 671

 Score =  278 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 72/247 (29%), Positives = 136/247 (55%), Gaps = 8/247 (3%)

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             + + +L  AK+ A K +  KS+FLA +SHE+RTPL AI+GF+ +I         +  Y
Sbjct: 188 RYEAEKELKEAKEAAVKANKAKSEFLANMSHELRTPLNAILGFTRLISRD---SSISSEY 244

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            +Y   ++RSG  +L+++ND+L++SKIE+G+   +     L   +     +++  A  K 
Sbjct: 245 RQYLEIVNRSGEHLLELINDILEMSKIEAGRTVFNPSNFDLYALLDNIAEMLRSQAQAKA 304

Query: 684 ILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVIL 739
           + +    ++++P+ I  D   ++Q+ +N+L N + FT SGG   ++ +       + ++ 
Sbjct: 305 LSLIFDRSSDLPQYICTDESKLRQVLINLLGNGLKFTESGGVTLRVKLGEKREDYQRLLW 364

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            + DTG+G+   E+ K  +PF Q    ++ + +GTGLGLP++K  V+   G   + S   
Sbjct: 365 EIEDTGLGIAPEEIYKLFQPFNQTETGRKSQ-QGTGLGLPISKKFVELMGGAIGVSSILG 423

Query: 800 KGTLIEI 806
           +G++   
Sbjct: 424 QGSIFSF 430


>gi|153872721|ref|ZP_02001529.1| Response regulator receiver protein [Beggiatoa sp. PS]
 gi|152070813|gb|EDN68471.1| Response regulator receiver protein [Beggiatoa sp. PS]
          Length = 677

 Score =  278 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 75/264 (28%), Positives = 131/264 (49%), Gaps = 19/264 (7%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
             ++ +  +       E  S +KS+FLA +SHE+RTPL +++  S+++ N + G L + +
Sbjct: 127 ALEKTQQAIEAKANELELASRYKSEFLANMSHELRTPLNSLLILSQLLTNNKQGNLTD-K 185

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
            +EYA  I  +G+ +L ++ND+LD+SK+E+GK+ +H E +SL + +          A  K
Sbjct: 186 QLEYAQTIHSAGSDLLKLINDILDLSKVEAGKIEIHLEEISLTDFIEIIKQKFCHVAENK 245

Query: 683 RILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIIS------------ 728
            +    + AN++P  +  D + + QI  N+LSNA  FT  GG +II+             
Sbjct: 246 ELAFDITVANDVPATLNTDEQRLNQIINNLLSNAFKFTHQGGIEIIVQSITEKSLQAPVS 305

Query: 729 ----TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
               T       +   V DTG+G+   + +   + F Q   +   R  GTGLGL +++ +
Sbjct: 306 TSLITDLQKGALIAFSVSDTGIGIPKDKQQVIFEAFQQADGTTSRRYGGTGLGLSISRQL 365

Query: 785 VDANMGKFYIFSTPAKGTLIEIIF 808
                G   + S   KG+   +  
Sbjct: 366 ARLLGGDLQLHSEEGKGSTFTLYL 389


>gi|301062031|ref|ZP_07202742.1| PAS domain S-box protein [delta proteobacterium NaphS2]
 gi|300443882|gb|EFK07936.1| PAS domain S-box protein [delta proteobacterium NaphS2]
          Length = 800

 Score =  278 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 81/519 (15%), Positives = 156/519 (30%), Gaps = 51/519 (9%)

Query: 315 FDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
            D         +        V   H  + Y NP+   L             G +      
Sbjct: 171 LDVVPVAHETVLKNMADAIVVLDRHHRIAYLNPAARHLLGLIDA----HIIGWTASEAFK 226

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
            + D  +     +     T   +                         +     + +   
Sbjct: 227 SVPDLISYAHETVLIKTETSFISE----------GTQRHFDLHVLPIRDARKRPVGRLMT 276

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
             +    +     +        ++ E     I   +R+G +   N+    LFG   E + 
Sbjct: 277 LHDVTKRKSTVEALRKSEYLYRTLTETIPLCIFRTDRQGRLTFANQTAFDLFGLKQEAVE 336

Query: 494 RK-PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
            +      +                  +    +E   +        +SL   +       
Sbjct: 337 EEINLFSLIVPEDQDRARANFKRRFEGEAVGEMEYTVVKKDGVGVPVSLYADVVMENEEP 396

Query: 553 -CYSLTMHDISEWKQEKNKLSHAKKIAEKES--SHKSDFLARVSHEIRTPLTAIIGFSEV 609
             +   + D SE K+ + +    +                A V+H+    L +I G +  
Sbjct: 397 VGFQGILMDQSERKRAEEEKKKIEAQLLHAQKMEAIGSLAAGVAHDFNNLLMSIQGHT-- 454

Query: 610 IKNQRFGPLGNP--RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
                FG  GN    + E+   I+       ++   LL  ++          +P +++  
Sbjct: 455 ---SLFGLDGNEPASFSEHLKGIEACVGRGANLTKQLLGFAR----GGKCEVKPWNINHI 507

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727
           + E+  L       K I I+T    +   +  D   ++Q  LN+  NA H  PSGG++ +
Sbjct: 508 LLESSRLFGRT--RKEISIQTKLEKSPWTVELDRGQLEQAFLNLFVNAWHAMPSGGKLFL 565

Query: 728 ST------------THTSNE-EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE-G 773
            T              ++N   V + V+DTG+GMT     +   PF             G
Sbjct: 566 ETENVWLKETPAGQRRSANGRYVKITVKDTGIGMTKEVQSRIFDPFFTT-----REFGNG 620

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
           TG+GL  A  ++  + G   + S P++G    +  P  +
Sbjct: 621 TGMGLASAYGILRNHGGHIEVESAPSQGASFMLYLPASE 659



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/282 (10%), Positives = 73/282 (25%), Gaps = 20/282 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCD-VSDILHIDPNNHIGDLLKRQNTWYGKT 147
           +D H  +  ++      +G     +IG    +    +  +    H   L+K + ++  + 
Sbjct: 192 LDRHHRIAYLNPAARHLLGLIDAHIIGWTASEAFKSVPDLISYAHETVLIKTETSFISE- 250

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                 GT  +   DL  LPI    +   G      +H            ++ +  +  L
Sbjct: 251 ------GTQRHF--DLHVLPIRDARKRPVGR--LMTLHDVTKRKSTVEALRKSEYLYRTL 300

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHL-----RMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
            E           +  +         L         +  +L      +D       +   
Sbjct: 301 TETIPLCIFRTDRQGRLTFANQTAFDLFGLKQEAVEEEINLFSLIVPEDQDRARANFKRR 360

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
              E+    +      +        Y   +  N +    +       S     +E +   
Sbjct: 361 FEGEAVGEMEYTVVKKDGVGVPVSLYADVVMENEEPVG-FQGILMDQSERKRAEEEKKKI 419

Query: 323 PETVDKCP--IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEI 362
              +            + G     N   + +  + S+  ++ 
Sbjct: 420 EAQLLHAQKMEAIGSLAAGVAHDFNNLLMSIQGHTSLFGLDG 461



 Score = 43.5 bits (101), Expect = 0.15,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 45/141 (31%), Gaps = 7/141 (4%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGM-RLCDVSDILHIDPNNH-IGDLLKRQNTW 143
            +  D  G L   ++      G     +     L  +      D          + +   
Sbjct: 308 IFRTDRQGRLTFANQTAFDLFGLKQEAVEEEINLFSLIVPEDQDRARANFKRRFEGEAVG 367

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             + T+   +G  + VP+ L A  +   N E  GF+G  I+             K+++ +
Sbjct: 368 EMEYTVVKKDG--VGVPVSLYADVVM-ENEEPVGFQG--ILMDQSERKRAEEEKKKIEAQ 422

Query: 204 FSHLHEIKKGHSSVEKEKYDI 224
             H  +++   S      +D 
Sbjct: 423 LLHAQKMEAIGSLAAGVAHDF 443


>gi|94311117|ref|YP_584327.1| periplasmic sensor signal transduction histidine kinase
           [Cupriavidus metallidurans CH34]
 gi|93354969|gb|ABF09058.1| sensory histidine kinase in two-component regulatory system with
           PhoB [Cupriavidus metallidurans CH34]
          Length = 450

 Score =  278 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 79/414 (19%), Positives = 162/414 (39%), Gaps = 35/414 (8%)

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDT-----RINKRKMEIEVMQLCSILEATSDGI 465
                +      + P  +   G     +       R    ++E +  +    ++A+  G+
Sbjct: 52  RLWKVLDAPAYGEIPSALGLWGEVYYRLHRLVKRWRTQVLQVEQQHTRFIQAIQASPYGV 111

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
            +++    I   N    + FG   +  +R+  T  +         HYLT        +  
Sbjct: 112 LMLDDADQIEWCNDVAEQHFGLNAKRDVRQRITHLIR---RPEFVHYLTR-------ERY 161

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
           ++  +     E   S   +       +   +   DI++ +  +              + +
Sbjct: 162 DEPLIMRDMGEHKRSSTSVQILPYGENRKLVLTQDITKVENTE--------------AMR 207

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
            DF+A VSHE++TPLT + GF E +++    P+       Y + +      +  IV DLL
Sbjct: 208 RDFVANVSHELKTPLTVLTGFLETVRD---LPVSEEDRKRYIDMMLVQSMRMQHIVEDLL 264

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
            ++K+ES       +PV +    +  +   +  +  +   I       +  +      + 
Sbjct: 265 ALAKLESDVQPPTLDPVDVGGLAAHLVHDAEALSQGRH-DIHAEIDTAV-VLRGSEGELL 322

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
               N++SNA+ +TP GG+I I  T+T    V   V DTG+G+    + +  + F ++  
Sbjct: 323 SALGNLVSNAVRYTPDGGRIAIRMTYTDGHSV-FSVSDTGLGIAPEHIPRLTERFYRVDR 381

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819
           S+     GTGLGL + K ++  +     + S   +G+   I+FP+  + +  + 
Sbjct: 382 SRSRDTGGTGLGLAIVKHVLSRHHADLRVTSEVGRGSTFRIVFPVDRSGYEPES 435


>gi|315121866|ref|YP_004062355.1| putative two-component sensor histidine kinase transcriptional
           regulatory protein [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313495268|gb|ADR51867.1| putative two-component sensor histidine kinase transcriptional
           regulatory protein [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 498

 Score =  278 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 89/249 (35%), Positives = 147/249 (59%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I+E +  K+     ++ AE+ +  KS FLA +SHE+RTPL AI+GFSEVI  +  GPL N
Sbjct: 225 IAELEVAKSLSDKTRQRAEEANLAKSRFLASMSHELRTPLNAILGFSEVIGLETMGPLNN 284

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
             Y EY   I RSG  +L+++N++LD+S+IE+G+  L    +SL + + E + ++QL A 
Sbjct: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIMHECMIMLQLRAQ 344

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
           EK I I       +  + AD + ++Q+ LN+LSNA+ FT  GG++ +    T+     + 
Sbjct: 345 EKYIEIFQQIDPTLSSVWADEKGMRQVILNLLSNAVKFTSIGGKVRVKVGWTAGGGQYIS 404

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           ++D G G++  E+   +  FGQ   + +   +G GLGLP+ ++++  + G+F I S   +
Sbjct: 405 IKDNGPGISEGEMPTVLSSFGQGSIAIKSAEQGVGLGLPIVQSIMANHGGQFRIKSKLQE 464

Query: 801 GTLIEIIFP 809
           G  +  I P
Sbjct: 465 GVEVIAILP 473


>gi|297248360|ref|ZP_06932078.1| sensory box histidine kinase/response regulator [Brucella abortus
           bv. 5 str. B3196]
 gi|297175529|gb|EFH34876.1| sensory box histidine kinase/response regulator [Brucella abortus
           bv. 5 str. B3196]
          Length = 945

 Score =  278 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 99/626 (15%), Positives = 208/626 (33%), Gaps = 51/626 (8%)

Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271
           +G      + Y   +  +    +R  ++V +     +     L       L+++E     
Sbjct: 192 RGQIVYANQAYARMTGATDADGIRPLDQVLASEPAASDAIYRLTNAVRDGLSAQEEVRIS 251

Query: 272 QEDFHTINLNQY--TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE-----NLTPE 324
                  N +      +     L+  ++     ++ +         ++            
Sbjct: 252 GGLSRGANGSLAPVWYRIKARALEGGAEFKGALVAWQVADISEERAEQERFFQELQEAIN 311

Query: 325 TVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
            +D  P  FF     G + Y N +               +  L+ ++    ++       
Sbjct: 312 HLDHAPAGFFSANPAGRIIYLNATLAEWLGVDLTQFTPGSLTLNDIVAGSGMA------L 365

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
           +   +++      +     +      SLA+ F    +  +         I  +  +   +
Sbjct: 366 IKAVKAEPGTSRNTVIDLDLIKRNGQSLAVRFYHRVQTARDGMPGTTRTIVLDRAEGDDS 425

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG--YPVEDILRKPFTVFL 501
                   ++      +    IA ++ EG  L TN     +F      + I R+     +
Sbjct: 426 SVAQRSAEVRFTRFFNSAPMAIAAVDAEGHTLRTNARFLDIFSGVVDRDAIDRRVKLENV 485

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF----SSCYSLT 557
                    +                 T+    EE+ +   +                ++
Sbjct: 486 VHERDRETFNKALAAAFAGQASISPVDTVLPGNEERHIRFYMSPVTDLGGEAAEEAAVIS 545

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
             + +E K  +N+++ ++K+              ++H+    LTAII  S+++       
Sbjct: 546 AVETTEQKALENQMAQSQKM-----QAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNH--R 598

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
             +P + +  N I ++ N    +V  LL  S+    +  L  E + L + +++ + ++  
Sbjct: 599 ASDPSFPDIMN-IKQNANRAASLVRQLLAFSR----RQTLRPEVLDLTDVLAD-LRMLLA 652

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT------- 730
               K I ++     ++  + ADL   +Q+A+N+  NA    P GGQI + T        
Sbjct: 653 RLVGKDIELKIDHGRDLWPVKADLGQFEQVAVNLAVNARDAMPEGGQITLRTRNIPAADA 712

Query: 731 -------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
                      + V+  V DTG G+    LEK  +PF          G+GTGLGL +   
Sbjct: 713 AKLHYRDLPEADYVVFEVEDTGTGIPADVLEKIFEPFFTTK----EVGKGTGLGLSMVYG 768

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFP 809
           ++    G  Y  S   KGT  +I  P
Sbjct: 769 IIKQTGGFIYCDSEVGKGTTFKIFLP 794



 Score = 73.1 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/393 (10%), Positives = 108/393 (27%), Gaps = 18/393 (4%)

Query: 164 AALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYD 223
           +A  IY   R     R  GI++ +R++    A+G   +++ +             ++   
Sbjct: 28  SANRIYLDARASVPARRAGILNEDRIELPDDAIGASAERRSTRDLRKPSRAGIQHEKAVG 87

Query: 224 IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY 283
           + S+Q+   + +       L          L+     +L    + +         +    
Sbjct: 88  LMSRQTDNTYPK------PLVMPKRGPSAALRLLIVGILLMGAAFIYFLFRDQLGDGFAL 141

Query: 284 TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLF 342
                   +       F            +   + ++L    +D  P    +    G + 
Sbjct: 142 VLMGVLSMVG-----VFYLFGAATGLIQFSQRSDHQDLAHSFMDTQPEGTVISDPRGQIV 196

Query: 343 YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT 402
           YAN ++  +T     D I     +  L   P  SD        +                
Sbjct: 197 YANQAYARMTGATDADGIRPLDQV--LASEPAASDAIYRLTNAVRDGLSAQEEVRISGGL 254

Query: 403 IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC-SI--LE 459
            +    +   + +    +A +         +  +  D    + + E    +L  +I  L+
Sbjct: 255 SRGANGSLAPVWYRIKARALEGGAEFKGALVAWQVADISEERAEQERFFQELQEAINHLD 314

Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT-VFLEQNTPSVMNHYLTEILS 518
               G    N  G I+  N  +++  G  +        T   +   +   +   +     
Sbjct: 315 HAPAGFFSANPAGRIIYLNATLAEWLGVDLTQFTPGSLTLNDIVAGSGMALIKAVKAEPG 374

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
                 ++   +    +   +     ++     
Sbjct: 375 TSRNTVIDLDLIKRNGQSLAVRFYHRVQTARDG 407



 Score = 62.7 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 47/420 (11%), Positives = 103/420 (24%), Gaps = 38/420 (9%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD--ILHIDPNNHIGDLLKRQNTWYGKT 147
           D  G +   ++   +  G      I   L  V        D    + + ++   +   + 
Sbjct: 190 DPRGQIVYANQAYARMTGATDADGI-RPLDQVLASEPAASDAIYRLTNAVRDGLSAQEEV 248

Query: 148 TL-----WPIEGTNLYVPIDLAALPIYSRNREFSGF-RGFGIVHVNRVDNDPRALGKRLD 201
            +         G+   V   + A  +     EF G    + +  ++    +     + L 
Sbjct: 249 RISGGLSRGANGSLAPVWYRIKARALEGGA-EFKGALVAWQVADISEERAEQERFFQELQ 307

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR------MKNKVSSLTEYYAHKDDVLK 255
           +  +HL     G  S       I+   +    L           ++           ++K
Sbjct: 308 EAINHLDHAPAGFFSANPAGRIIYLNATLAEWLGVDLTQFTPGSLTLNDIVAGSGMALIK 367

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN--NSKESFEYLSHRNHPSLSA 313
             K    TS  + +                     T ++          L        S 
Sbjct: 368 AVKAEPGTSRNTVIDLDLIKRNGQSLAVRFYHRVQTARDGMPGTTRTIVLDRAEGDDSSV 427

Query: 314 YFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLT-KYKSVDDIEIAGGLSTLLD 371
                E       +  P+    V + G+    N  FL +       D I+    L  +  
Sbjct: 428 AQRSAEVRFTRFFNSAPMAIAAVDAEGHTLRTNARFLDIFSGVVDRDAIDRRVKLENV-V 486

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
             +  +         +    +       L     N E  +     P              
Sbjct: 487 HERDRETFNKALAAAFAGQASISPVDTVL---PGNEERHIRFYMSPVTDLGGEAAEEAAV 543

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSI----------LEATSDGIAIINREGIILSTNRAV 481
               E  + +  + +M  +  ++ ++                 I + +    +L TN   
Sbjct: 544 ISAVETTEQKALENQM-AQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSD---LLLTNHRA 599



 Score = 48.9 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 45/134 (33%), Gaps = 12/134 (8%)

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY-LT 514
           S ++   +G  I +  G I+  N+A +++ G    D   +P    L     +    Y LT
Sbjct: 177 SFMDTQPEGTVISDPRGQIVYANQAYARMTGATDAD-GIRPLDQVLASEPAASDAIYRLT 235

Query: 515 EILSLDLRQTLEKITLG---STKEEKLLSLRIIIKKLPFSSC-------YSLTMHDISEW 564
             +   L    E    G         L  +   IK               +  + DISE 
Sbjct: 236 NAVRDGLSAQEEVRISGGLSRGANGSLAPVWYRIKARALEGGAEFKGALVAWQVADISEE 295

Query: 565 KQEKNKLSHAKKIA 578
           + E+ +     + A
Sbjct: 296 RAEQERFFQELQEA 309


>gi|302382317|ref|YP_003818140.1| multi-sensor hybrid histidine kinase [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302192945|gb|ADL00517.1| multi-sensor hybrid histidine kinase [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 1083

 Score =  278 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 98/664 (14%), Positives = 202/664 (30%), Gaps = 54/664 (8%)

Query: 184 VHVNRVDNDPRALGKRLDKK----FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK 239
           V          A     + +    F  + E       V+     +        +      
Sbjct: 299 VRTATERARTAAELADSEGRYRTLFDAMDEGFCIIQFVDGPDGPLSDYVHITANRAAAKH 358

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDF---HTINLNQYTKKQYFGTLQNNS 296
                       D+L  E    +   E  L         H +  +    +     ++   
Sbjct: 359 AGLAGVEGRSVRDLLGDEAADWVALYEEVLRTGRPIRVEHELKASGRWLEVAAFRIEPPE 418

Query: 297 KESFEYL--SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTK 353
           +     L        +      + E          P   +     G +++ N      T 
Sbjct: 419 RLQVAVLFKDLTARKAAETALRQSEAQFRAFTQAVPNHVWASRPDGEIYWYNDQVYAYTG 478

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
           + ++ D++     + +L         A +   +  +      A      I+         
Sbjct: 479 H-AIGDLDGTDAWAGVLHPDDAPG--AAEAWWVALTTGQPYRAE---FRIRRADGAWRWF 532

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME-------IEVMQLCSILEATSDGIA 466
           T       +   +     G   +  D R    ++E        E  +L ++   ++D +A
Sbjct: 533 TVSATPVRDADGQITGWVGANSDIDDIRGLNAQLEILLAGSKAERDRLWTL---SADALA 589

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
             +  G +++ N A + + G+  +++L  P+   +  +        LT +        + 
Sbjct: 590 RADYAGGLVAVNPAWTSILGWSEQELLTNPYANLINPDDADATLTALTRMGESGQA--IR 647

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES--SH 584
                 +K      +   +        +     D++E K  +  L+ A++   +      
Sbjct: 648 FENRILSKSGVWTPMGWTVTPEDDGVHFIAVGRDMTEDKAREAALAQAQEALRQSQKMEA 707

Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
                  ++H+    L  I G  E + ++R           Y +    S      +   L
Sbjct: 708 VGQLTGGIAHDFNNLLAGISGALE-LLSKRLSEGRLNGMERYIDAAQGSAQRAASLTQRL 766

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704
           L  S+    +  L  +P  ++  ++    L++  +    + +    A  +     D   +
Sbjct: 767 LAFSR----RQTLDPKPTDVNRLINGMEDLIR-RSVGPDVEVEVVGAGGLWATRVDPSQL 821

Query: 705 KQIALNILSNAIHFT-PSGGQIIISTT-------------HTSNEEVILRVRDTGVGMTN 750
           +   LN+  N      P GG++ I T+                 + V L V DTG GMT 
Sbjct: 822 ENALLNLCINGRDAMAPDGGRLTIETSNKWLDERAARERELAPGQYVSLCVTDTGSGMTP 881

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
               +A  PF          G+GTGLGL +    V  + G+  I+S   KGT + +  P 
Sbjct: 882 EVQAQAFDPFFTTKPL----GQGTGLGLSMIHGFVRQSGGQVRIYSELGKGTTLCLYLPR 937

Query: 811 YDTS 814
           Y  S
Sbjct: 938 YQGS 941



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 51/473 (10%), Positives = 117/473 (24%), Gaps = 49/473 (10%)

Query: 135 DLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN----RVD 190
                  T  G  + WP         +  + +P+        G  G  I +         
Sbjct: 6   RAFDWAATPLGPISAWPQSLRTATGLLVASPIPMV----MLWGADGVMIYNDAYSVFAGG 61

Query: 191 NDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYA 248
             P  LG ++ + +  + +       V      +  +       R     +V    +Y+ 
Sbjct: 62  RHPDLLGSKVREGWPEVADFNDNVMKVGLAGGTLAYRDQALTLHRHGWPEQVWMDLDYWP 121

Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
             D+           +E +     +      L      +        +      L+    
Sbjct: 122 VPDESGAPAGVICTVTETTERNHLQARQAALLELNDAFRDLTDAGEIAYAGASILARALG 181

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDD----IEIAG 364
            + + Y           VD       +        A    + LT   ++ D         
Sbjct: 182 TTRAGY---------GLVDAAAGTVDIQRDYRPADA----VSLTGVVALADYGTFFPQLL 228

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
               ++     +D      +   R        +  L       E    M        +  
Sbjct: 229 KGEAVVIDDVATDPRTAGSLEAMRHLGVGSTVNIPLIE---QGELVAIMYVGDVRPRHWT 285

Query: 425 PENMPQN----GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII----NREG---- 472
           P  +              +      ++     +  ++ +A  +G  II      +G    
Sbjct: 286 PAELALMREIKARVRTATERARTAAELADSEGRYRTLFDAMDEGFCIIQFVDGPDGPLSD 345

Query: 473 -IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
            + ++ NRA +K  G    +   +     L       +     E+L       +E     
Sbjct: 346 YVHITANRAAAKHAGLAGVE--GRSVRDLLGDEAADWV-ALYEEVLRTGRPIRVEHEL-- 400

Query: 532 STKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
                + L +     + P     ++   D++  K  +  L  ++      +  
Sbjct: 401 -KASGRWLEVAAFRIEPPERLQVAVLFKDLTARKAAETALRQSEAQFRAFTQA 452



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 40/405 (9%), Positives = 100/405 (24%), Gaps = 16/405 (3%)

Query: 54  FTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM 113
           F D      + T    SE  F            W     G +   ++++    G+    +
Sbjct: 426 FKDLTARKAAETALRQSEAQFRAFTQAVPNH-VWASRPDGEIYWYNDQVYAYTGHAIGDL 484

Query: 114 IGM-RLCDVSDILHIDPNNHIG-DLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSR 171
            G      V                L     +  +  +   +G   +    ++A P+   
Sbjct: 485 DGTDAWAGVLHPDDAPGAAEAWWVALTTGQPYRAEFRIRRADG--AWRWFTVSATPVRDA 542

Query: 172 NREFSGFRGF-GIVHVNRVDNDPRALGKR-LDKKFSHLHEIKKGHSSVEKEKYDIFSQQS 229
           + + +G+ G    +   R  N    +       +   L  +     +       + +   
Sbjct: 543 DGQITGWVGANSDIDDIRGLNAQLEILLAGSKAERDRLWTLSADALARADYAGGLVAVNP 602

Query: 230 PPPHLRMKNKVSSLTEYYAHK--DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287
               +   ++   LT  YA+    D        L    ES    + +   ++ +      
Sbjct: 603 AWTSILGWSEQELLTNPYANLINPDDADATLTALTRMGESGQAIRFENRILSKSGVWTPM 662

Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPS 347
            +     +    F  +        +      +        +        + G     N  
Sbjct: 663 GWTVTPEDDGVHFIAVGRDMTEDKAREAALAQAQEALRQSQKMEAVGQLTGGIAHDFNNL 722

Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
              ++   +++ +        L    +  D             +  +A S R        
Sbjct: 723 LAGISG--ALELLSKRLSEGRLNGMERYIDAAQGSAQRAASLTQRLLAFSRRQTLDPKPT 780

Query: 408 ENSLAMT-----FIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
           + +  +             +   E +   G+    VD    +  +
Sbjct: 781 DVNRLINGMEDLIRRSVGPDVEVEVVGAGGLWATRVDPSQLENAL 825


>gi|153007202|ref|YP_001381527.1| PAS/PAC sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. Fw109-5]
 gi|152030775|gb|ABS28543.1| PAS/PAC sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. Fw109-5]
          Length = 514

 Score =  278 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 90/532 (16%), Positives = 187/532 (35%), Gaps = 54/532 (10%)

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYK 355
                 +      + +A+      +     D  P    V      +     +        
Sbjct: 7   GSGRTLVPAPGDIARNAFGGITAAMFEAVFDASPAGLAVLVGPDLIVDHANAACRALTRA 66

Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR---------SDRTCIAASARLHTIQWN 406
            VD +            P +                      +         ++  I W 
Sbjct: 67  DVDPVGQPFEDVWPTGDPAVLPALRNVLATGAGLCVDDYAVPAAGGVRRFCVQVRRIPWR 126

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
           R  ++ +      +A        +                      +L + ++A +DG+ 
Sbjct: 127 RGLAVLVAVWETSEAWAARRAAEEAAAAALTRAG------------ELDATVDAIADGLV 174

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
           I  R+G IL  NRA  +  GY   +     F            +  L  +    + + L+
Sbjct: 175 IYGRDGEILRMNRAAMRQLGYDAGEASP-SFAERFAALRVYAPDGRLMRLEDTPVVRALQ 233

Query: 527 KITLGSTK-----EEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKI 577
             T+ S       + + L +      +  +        LT  D +     +         
Sbjct: 234 GETVRSLHARVEYQGRSLWVLASSAPVRGADGSIAGAVLTFSDETALHAME--------- 284

Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
                  + D +  +SH++RTPL AI   + +++     P    R    A  + +S   +
Sbjct: 285 -----QARDDLVRMISHDLRTPLNAIYNQAHLLRR---YPNDAARVEARAAAVLKSCERM 336

Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697
             ++ DL++ + +E G++ +  EPV L  AV E +       +  R+ +      ++PR 
Sbjct: 337 SAMIQDLVEATLLEDGQLQISPEPVDLAAAVPELLERFHGAIDVDRVRLVVH--PDLPRA 394

Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757
           LAD + +++I +N+L+NA+ ++P  G++++         V + V D GVG+   ++    
Sbjct: 395 LADPQRLERIVVNLLTNALKYSPPQGEVVLELAPAPEG-VAIVVTDRGVGIAPEDVPHVF 453

Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             F +   +   + EG GLGL + + +V A+ G+  + S   +G+   ++ P
Sbjct: 454 DRFFRARGA--RQPEGLGLGLYITRHLVQAHGGRIEVSSRLGQGSTFRVVLP 503



 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/320 (7%), Positives = 75/320 (23%), Gaps = 29/320 (9%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR-------QNT 142
              G +  ++    + +G  A +         + +    P+  +  L            T
Sbjct: 177 GRDGEILRMNRAAMRQLGYDAGEASPSFAERFAALRVYAPDGRLMRLEDTPVVRALQGET 236

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
                     +G +  + +  ++ P+   +   +G             +        L +
Sbjct: 237 VRSLHARVEYQGRS--LWVLASSAPVRGADGSIAGA--VLTFSDETALHAMEQARDDLVR 292

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL----------RMKNKVSSLTEYYAHKDD 252
             SH           +      +   +               RM   +  L E    +D 
Sbjct: 293 MISHDLRTPLNAIYNQAHLLRRYPNDAARVEARAAAVLKSCERMSAMIQDLVEATLLEDG 352

Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
            L+    P+  +       +     I++++     +    +  +          N  + +
Sbjct: 353 QLQISPEPVDLAAAVPELLERFHGAIDVDRVRLVVHPDLPRALADPQRLERIVVNLLTNA 412

Query: 313 AYFDEGENLTPETVDKCPIPFFVYSHGNLF--------YANPSFLLLTKYKSVDDIEIAG 364
             +   +      +   P    +               +    F      +  + + +  
Sbjct: 413 LKYSPPQGEVVLELAPAPEGVAIVVTDRGVGIAPEDVPHVFDRFFRARGARQPEGLGLGL 472

Query: 365 GLSTLLDAPKLSDNNAIKPV 384
            ++  L             +
Sbjct: 473 YITRHLVQAHGGRIEVSSRL 492



 Score = 48.5 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/273 (10%), Positives = 60/273 (21%), Gaps = 14/273 (5%)

Query: 178 FRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK 237
           F G        V +   A    L      +        ++ +   D   Q          
Sbjct: 24  FGGITAAMFEAVFDASPAGLAVLVGPDLIVDHANAACRALTRADVDPVGQPFEDVWPTGD 83

Query: 238 NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297
             V             L  + Y +  +             + + +   ++    L    +
Sbjct: 84  PAVLPALRNVLATGAGLCVDDYAVPAAGGVRRF------CVQVRRIPWRRGLAVLVAVWE 137

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKS 356
            S  + + R     +A           TVD       +Y   G +   N + +    Y +
Sbjct: 138 TSEAWAARRAAEEAAAAALTRAGELDATVDAIADGLVIYGRDGEILRMNRAAMRQLGYDA 197

Query: 357 VDD---IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
            +             +             PV+      T  +  AR+         SL +
Sbjct: 198 GEASPSFAERFAALRVYAPDGRLMRLEDTPVVRALQGETVRSLHARVEYQ----GRSLWV 253

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
                                 ++      ++ 
Sbjct: 254 LASSAPVRGADGSIAGAVLTFSDETALHAMEQA 286


>gi|3953516|dbj|BAA34717.1| sensor kinase rtpA [Pseudomonas tolaasii]
          Length = 917

 Score =  278 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 77/243 (31%), Positives = 141/243 (58%), Gaps = 8/243 (3%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L   +K A + S  KS+FLA +SHEIRTPL  I+GF+ +++     P    R ++Y   
Sbjct: 270 ELDLTRKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSELSP----RQLDYLGT 325

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I++S + +L I+N++LD SKIE+GK+ L   P +L + + + ++++   A+ K++ + + 
Sbjct: 326 IEKSADNLLGIINEILDFSKIEAGKLVLDSVPFNLRDLLQDTLTILAPAAHAKQLELVSL 385

Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQI---IISTTHTSNEEVILRVRDTG 745
              + P  ++ D   +KQI  N++SNAI FT  G  +   ++      + ++ + V+DTG
Sbjct: 386 VYRDTPLALVGDPLRLKQILTNLISNAIKFTREGTIVARAMVEDEEEDSVQLRISVQDTG 445

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G++N ++    + F Q  NS   +  GTGLGL ++K +++   G+  + STP +G+   
Sbjct: 446 IGLSNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFW 505

Query: 806 IIF 808
           I  
Sbjct: 506 ISL 508


>gi|303248672|ref|ZP_07334926.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
 gi|302489928|gb|EFL49854.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
          Length = 819

 Score =  278 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 113/699 (16%), Positives = 223/699 (31%), Gaps = 79/699 (11%)

Query: 172 NREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231
           +R  +      ++ ++  +    AL    D+  S L   + G       + DI    +  
Sbjct: 3   DRRLAEIVSSDVIAISPAETMRSALAVMRDRGISCLVATEDGAPVGIVTERDILWAAAHR 62

Query: 232 PHLRMKNKVSSL--TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYF 289
                +  V  +          D +  E Y L+  +        D         T+    
Sbjct: 63  GLDFPERPVGDVMTAPVITVPADTMLVEAYHLMAQKHLRHLVMVDAAGKAGGVLTQSDLV 122

Query: 290 GTLQNN-------------SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY 336
             L++                      +     ++        +      +  P      
Sbjct: 123 AGLEHEGLTGAKCVADIMTRDVVTAPGNISVREAVRRMASRSISCLVVAREDRPAGIITE 182

Query: 337 SHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIA 395
                L   NP    LT       +        +          A   +   R       
Sbjct: 183 RDVVRLLADNPRLGRLT-------LYDIMSCPVVCVEADQPVFEAAMLMKKRR------- 228

Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK--RKMEIEVMQ 453
              R   +  +    L +              +       ++    + +    ++ + + 
Sbjct: 229 --MRRLVVVDDDRRVLGLVTQSDIVRGLESRYVRSLKSALDEKSRALRQVGDSLDEKTLF 286

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
           L ++L +   G+   + +  I   N A   +FG     ++ +     +       +    
Sbjct: 287 LDNLLRSAETGVVAADEQWRITYVNPAAEDIFGICGAVLVGRDIRE-VHVERGVDLGALA 345

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQE--- 567
             + ++ L ++ E     +  +E    +               + + + D +E  +    
Sbjct: 346 RGLDAISLSRSHEFSFTLTGSDESRHYVARASGIYDARGVPAGFMVVVRDDTERCRAGEH 405

Query: 568 ----------------------KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
                                   +L+ A +      + KS FL+ VSHE+RTPLT+++G
Sbjct: 406 LERLTRNLERLVIERTSDLTAKARELTEANERLRDMDAIKSAFLSSVSHELRTPLTSLLG 465

Query: 606 FSEVI------------KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           FS++I             +         R IE    +   G  +  ++ND LD+S+IESG
Sbjct: 466 FSKLIDRDFSRFFLPLAADDPVLAKRGGRIIENLRVLSVEGERLARLLNDFLDLSRIESG 525

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLY-ANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712
           +M     PV L E V   ++ V    A+   + + +      P ++AD   ++Q+ LN++
Sbjct: 526 RMEWRDRPVELAEVVKNTLAAVSGLFASRPEVDLESLLPEASPVVVADPDRLEQVLLNLI 585

Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI--PNSQQIR 770
            NA  FT  G  + +S          + VRDTG G+   + E+    F Q+         
Sbjct: 586 GNAAKFTAVGA-VTVSLDAPCPGVARVTVRDTGPGIAPEDRERIFDKFRQVRRDPEGSAP 644

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            +GTGLGL + + +V    G  ++   PA+G       P
Sbjct: 645 AKGTGLGLAICREIVTHYGGSIWVEPAPARGAAFVFELP 683



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/287 (12%), Positives = 76/287 (26%), Gaps = 40/287 (13%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D    +  ++       G     ++G  + +V     +D    +   L   +        
Sbjct: 302 DEQWRITYVNPAAEDIFGICGAVLVGRDIREVHVERGVD-LGALARGLDAISLSRSHEFS 360

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK------- 202
           + + G++        A  IY      +GF    +V  +          +RL +       
Sbjct: 361 FTLTGSDESRHYVARASGIYDARGVPAGFM--VVVRDDTERCRAGEHLERLTRNLERLVI 418

Query: 203 --------KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK--------------- 239
                   K   L E  +    ++  K    S  S      + +                
Sbjct: 419 ERTSDLTAKARELTEANERLRDMDAIKSAFLSSVSHELRTPLTSLLGFSKLIDRDFSRFF 478

Query: 240 --VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297
             +++     A +   +      L    E       DF  ++  +  + ++       ++
Sbjct: 479 LPLAADDPVLAKRGGRIIENLRVLSVEGERLARLLNDFLDLSRIESGRMEWRDRPVELAE 538

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYA 344
                L+  +    S    + E+L PE       P  V     L   
Sbjct: 539 VVKNTLAAVSGLFASRPEVDLESLLPEA-----SPVVVADPDRLEQV 580


>gi|302784310|ref|XP_002973927.1| hypothetical protein SELMODRAFT_100347 [Selaginella moellendorffii]
 gi|300158259|gb|EFJ24882.1| hypothetical protein SELMODRAFT_100347 [Selaginella moellendorffii]
          Length = 320

 Score =  278 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 72/274 (26%), Positives = 126/274 (45%), Gaps = 25/274 (9%)

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
           L +    +  +   +L  +K+ AE  S  KSDFLA +SHEIRTP+  I+G S ++     
Sbjct: 41  LVLQRTHQLVKANEELQTSKQAAELASQAKSDFLANMSHEIRTPIHGILGMSALVL---- 96

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
           G        E    +     L+L I+N +LD+ KIE+G+  +     +L   +   + ++
Sbjct: 97  GTSLTDEQKENMTTVSECAELLLHIINSILDLGKIEAGRFEVELISFNLHHVLKSTVHIL 156

Query: 676 QLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
           Q  A    + +     + +P  ++ D   ++Q  LN++ NA+ FTP G ++ +  +    
Sbjct: 157 QPRAQAHNLRLSYEIDSAVPEFLVGDSGKLRQCLLNLVGNALKFTPEG-EVRVEVSVHRF 215

Query: 735 E-------------------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
                               E++L + D+G+G++  +L+   KPF Q   S      GTG
Sbjct: 216 GMQDDSVLSRLNASQWSDMSEMMLEISDSGIGISKNKLKDVFKPFTQADASISRLYGGTG 275

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           LGL + +  V+   G   + S   KG+   I+ P
Sbjct: 276 LGLCVVQRFVELMGGHILVESEYGKGSSFYIVLP 309


>gi|260177204|gb|ACX33927.1| putative response regulator receiver sensor signal transduction
           histidine kinase [uncultured prokaryote AT5]
          Length = 378

 Score =  278 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 81/259 (31%), Positives = 134/259 (51%), Gaps = 9/259 (3%)

Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
            +   +    E ++ + +     +  E  S +KS FLA +SHE+RTPL AIIG +E++ +
Sbjct: 124 RHVEVLR---EARRREAE----NQRLEAASHNKSQFLADMSHELRTPLNAIIGLTEMMVS 176

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
                 G  + +E    ++ +G  +L ++N++LD+SKIE+GK+ L+ EPV+L   + E I
Sbjct: 177 NA-ARFGTEKALEPLRRVNAAGTHLLSLINEVLDLSKIEAGKLELNPEPVNLARVIDEVI 235

Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTH 731
                 A + +  +     +N+    AD   +KQI LN+LSNA  FT  G   + +    
Sbjct: 236 GTAGQLAEKNQNRLIVEAQDNLGAFTADPLRLKQILLNLLSNACKFTKEGDVALRVRKVA 295

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
              + V L V DTG+G+T  +  K  + F Q  +    R  GTGLGL L++ +     G 
Sbjct: 296 DGRDWVELAVADTGIGLTAEQQAKLFQEFTQADSLTARRYGGTGLGLALSRKLARMMGGD 355

Query: 792 FYIFSTPAKGTLIEIIFPL 810
             + S P KG++  +  P+
Sbjct: 356 VTVASEPGKGSVFTVRLPV 374


>gi|219848900|ref|YP_002463333.1| PAS/PAC sensor signal transduction histidine kinase [Chloroflexus
           aggregans DSM 9485]
 gi|219543159|gb|ACL24897.1| PAS/PAC sensor signal transduction histidine kinase [Chloroflexus
           aggregans DSM 9485]
          Length = 752

 Score =  278 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 81/369 (21%), Positives = 157/369 (42%), Gaps = 33/369 (8%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            ++  E  Q  +I+E+ +DGI   +  G I S NRA  +L G   +D + +  +      
Sbjct: 392 AQVRAEAGQRAAIVESITDGIIFTDIHGEIRSINRATRRLLGLDDDDPIPRRLSDL---- 447

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDIS 562
                   L  +         ++        +  + L +   K    +   Y   + D++
Sbjct: 448 -------PLQPLQEGIPGFGDQRAQDLFALGDAFIRLSVAPVKEENGTLLGYVAVLQDLT 500

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E                     K++F+  +SHE+RTPLT I G ++++     GPL +  
Sbjct: 501 EEVMV--------------DRAKTNFIGTISHELRTPLTVIRGNADLLLRGLAGPL-DEE 545

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
              +   I    N + +++++++ I+ ++SG +  + EP+ +   + +A+  VQ     K
Sbjct: 546 QKSFVESIRLHANNMTNLISNVITIANLDSGSLKSNLEPIEVRRPIEDAVWQVQSQIKAK 605

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
            + +  +    +P +LAD+  V+ I + +L NA  +T +G  I I      +  + + V 
Sbjct: 606 GLQLEIAIPKKLPTVLADVDHVRTIMIQLLDNARRYTNAG-TITIRAIPQPD-MMRIEVS 663

Query: 743 DTGVGMTNYELEKAMKPFGQ---IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
           DTG G+  +  E+  + F +             G GLGL +AK +V+   G   + STP 
Sbjct: 664 DTGRGIPPHMHEQIFERFIRGEGTSEGINSSERGIGLGLAIAKQLVERLGGTIGVESTPG 723

Query: 800 KGTLIEIIF 808
           +G+      
Sbjct: 724 QGSTFFFTL 732


>gi|15889187|ref|NP_354868.1| two component sensor kinase [Agrobacterium tumefaciens str. C58]
 gi|15157006|gb|AAK87653.1| two component sensor kinase [Agrobacterium tumefaciens str. C58]
          Length = 511

 Score =  278 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 98/249 (39%), Positives = 158/249 (63%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I+E +   +    A++ AE+ +  KS FLA +SHE+RTPL AI+GFSEV+ ++  GPL N
Sbjct: 238 IAELEVANSVSDEARRRAEEANLAKSRFLASMSHELRTPLNAILGFSEVMSSEVLGPLNN 297

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
           P Y EY+  I RSG  +LD++N++LD+S+IE+G+ +L+ E +S+ E   + I ++QL A 
Sbjct: 298 PLYKEYSGDIHRSGQHLLDLINEILDLSRIEAGRYDLNEESISMLEIAEDCIGMIQLRAR 357

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
            K I I   F  ++P++ AD +S++Q+ LN+LSNA+ FTP GG+I++    T+     + 
Sbjct: 358 AKNIRISQQFEASLPQVWADEKSIRQVILNLLSNAVKFTPQGGEILVKAGWTAGGGQYVS 417

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           +RD G G+   E+   +  FGQ   + +   +GTGLGLP+ +A++  + G+F + S   +
Sbjct: 418 IRDNGPGIPEDEIPVVLSAFGQGSIAIKSAEQGTGLGLPIVQAILAKHDGQFILKSKLRE 477

Query: 801 GTLIEIIFP 809
           GT    I P
Sbjct: 478 GTEGIAILP 486


>gi|315126263|ref|YP_004068266.1| PAS/PAC sensor signal transduction histidine kinase
           [Pseudoalteromonas sp. SM9913]
 gi|315014777|gb|ADT68115.1| PAS/PAC sensor signal transduction histidine kinase
           [Pseudoalteromonas sp. SM9913]
          Length = 493

 Score =  278 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 90/524 (17%), Positives = 181/524 (34%), Gaps = 76/524 (14%)

Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIE-------- 361
            S   +  E    + V+  P+   V +    + +AN     +  Y+  + I         
Sbjct: 13  PSLTVNMDEAFLTQLVNCLPMGAMVVNTDAQILFANNQLSEILGYEDSELIGMNIDNLLP 72

Query: 362 ------IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
                     +S     P+       + +   +     I     L+ IQ           
Sbjct: 73  AQFKANHTHLMSQFFANPRKRLMGEGRELFASQKSGKQIPIEIGLNPIQ----------- 121

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
                     +         +                     ++A   G+ I+++ GII 
Sbjct: 122 ---------GQQELVLATLVDISQRLRA-------NNMFQRSIQAAPHGVLIVDQAGIIQ 165

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT--LEKITLGST 533
           + N+++ K FGY   ++L K   + L Q      +            ++  + +      
Sbjct: 166 AVNQSLCKSFGYSEIELLDKKMEMLLPQRYQGHHSALRHSFHREPSVRSMGVGRDLTALH 225

Query: 534 KEEKLLSLRIIIKK---LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
           K+ K   + + +             +++ DI+E KQ + +L        + ++   +F  
Sbjct: 226 KDGKEFPVEVGLSPFINTNDEDMVFVSLLDITERKQMETEL-------RENNTSLKEFTY 278

Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650
             SH++R+PL  I    E IK           Y      ID   + +  ++++LL  ++ 
Sbjct: 279 VASHDLRSPLRGISNLIEWIKEDLGTTTPEVEY--NLTRIDDRIHKMETLIDNLLAYAR- 335

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYAN---EKRILIRTSFANNIPRILADLRSVKQI 707
            +GK  L  + + + + +S    L+ L A     K + + T      P        ++ +
Sbjct: 336 -AGKATLDTQVIDMHKLISNVTELLDLPAGMKLHKDVQLDTIVTAWTP--------LETV 386

Query: 708 ALNILSNAIHFTP-SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
             N+LSNAI       G I I      N    + V D G G+     E+    F    + 
Sbjct: 387 VRNLLSNAIKHHDSKEGTIEIRC-VAENTLCHITVTDDGPGIPPEAYERIFSLFQTTSDD 445

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFP 809
           +     G+G+GL +++ +  A+ G+  + S  P KG+   + +P
Sbjct: 446 KS----GSGIGLSISRRLAQAHGGRISVSSNEPQKGSTFHVWWP 485


>gi|254509234|ref|ZP_05121329.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio
           parahaemolyticus 16]
 gi|219547825|gb|EED24855.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio
           parahaemolyticus 16]
          Length = 573

 Score =  278 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 93/442 (21%), Positives = 175/442 (39%), Gaps = 65/442 (14%)

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL--------STN---- 478
                E   +++ + K+  E     +IL+A S      +++ I            N    
Sbjct: 10  QEALIELKQSQVREAKLAEEN---RAILDAISSITVASDKQQIFTELKKVLSLYINFSDF 66

Query: 479 ----------RAVSKLFGYPVED--------------ILRKPFTVFLEQNTPSVMN---- 510
                      A   L                     +  +   ++   N     +    
Sbjct: 67  LVLSKPSKNEHAYHTLLASSSCFQNLAWQDQSRFKRALSGESIILYEPNNAQEFSHLVGN 126

Query: 511 ---HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQE 567
                 + +++       + I +   +E    +L        F       + DI   +Q 
Sbjct: 127 TDYDINSALITGAQGTITDSIIVLLGEEVGQFTLESRDTLSRFRPLLERALIDIERTEQL 186

Query: 568 KN-------KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           +        +L  A+  AE+ +  KS FLA +SHE+RTPL+A++G+ +V+          
Sbjct: 187 QQLVDIKTRQLKSAQVRAEQANQAKSRFLAMMSHELRTPLSAVLGYVDVLLADSKC---- 242

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
              IE    ++ S  L+L ++ND+L++S+IESG+  +  + V+L   +   +      ++
Sbjct: 243 DHQIEILEKMESSAELLLVLINDILELSRIESGEFRIKCQWVNLKNELEFMLEHFYALSD 302

Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
            K + +  +   +    +  D   + QI  N+L NAI FT +G  + +    TS  E+I+
Sbjct: 303 AKGLKLNVNLDIDAHHSVWVDPARILQIVFNLLGNAIKFTHAG-HVSLHAEVTSQ-ELII 360

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V DTG+G+    +E     F Q  +S   R  G+GLGL ++K +V    G   + S   
Sbjct: 361 EVEDTGIGIDPSRIETVFNQFKQADDSITRRYGGSGLGLTISKHLVTLMNGSIRVESEKG 420

Query: 800 KGTLIEIIFPL-----YDTSHP 816
           KG+  +I  P+     ++ + P
Sbjct: 421 KGSRFKIKLPISVKSGHELTQP 442


>gi|77464081|ref|YP_353585.1| PAS/PAC sensor hybrid histidine kinase [Rhodobacter sphaeroides
           2.4.1]
 gi|77388499|gb|ABA79684.1| PAS/PAC sensor hybrid histidine kinase [Rhodobacter sphaeroides
           2.4.1]
          Length = 945

 Score =  278 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 116/774 (14%), Positives = 242/774 (31%), Gaps = 76/774 (9%)

Query: 88  NIDAHGYLKEISEELPK---TIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144
            +DA   L            T+G  A    G  L D   +        +   ++      
Sbjct: 39  ELDADERLLRGHPGWLDRLPTLGPMAP---GQGLQDFLPVDLATEVRRVLAEVETTGAPV 95

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            +       G  +++ I  A LP  + +R                         +  +  
Sbjct: 96  SRDWQVRQAGARVWLAISAARLPPLAPDRRPGHAVMICDTTELHAQRKQADRLGKFAQLT 155

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
           ++L  +   H  +E        Q            + ++ +            +  +L  
Sbjct: 156 TNLVIVTDPHQRIEWVNAAFEQQTGHSGPSVRGQPLCAVLQGEPAPGGCGDRLRA-MLAE 214

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
             ++  E E        ++        L ++      Y++  +  +     +E       
Sbjct: 215 GRTARAEVEAT-AACGRRFWLDVSLQPLLDDEGALDGYMAVASDITAHKRQEEQLAAMAA 273

Query: 325 T-----------VDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                       VD  P  F  +     L   NP +       +   +  A       + 
Sbjct: 274 EARATRARLAAAVDVLPDGFAYFDAEDRLVVFNPQYRDCYPGAAAAIVPGAS-----FEQ 328

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
                  +   +     +   +AA    H    N++              +   +  + G
Sbjct: 329 ILRQAVQSGDILEARGREEEWLAARLAAHHRGSNQQEQQLADGRWLRVIERQTPDGGRVG 388

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-PVED 491
           +  +    ++ +++  I      + ++A+ DGIA  + EG  +  N A  ++FG    ++
Sbjct: 389 LRVDVTALKLAEQRTRI---DFSATMDASQDGIAFTDPEGRYIYMNPAHREMFGIATEDE 445

Query: 492 ILRKPFTVFLEQNTPSVMNH-YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
           IL + +      +    +    L  +LS    +      +G  ++   L   + +  L  
Sbjct: 446 ILGRSWRELYSGDVADHIATTALPALLSTGGWRG---ELIGRRRDGSDLPQEVSLT-LKA 501

Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH--KSDFLARVSHEIRTPLTAIIGFSE 608
                    DIS+  +E+ +    ++  +            + ++H++   L AI G + 
Sbjct: 502 DGGIICISRDISKRLREQQERMRLREELQMAQRREVIGQLASGLAHDLNNLLAAIGGSAL 561

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
           +I+  + G         +A  I  +      +V   L +     GK   +   + L   +
Sbjct: 562 LIQEMQSGAAEV-----HAQRILAATEQAGALVRRFLTL-----GKRQSNRSRIDLCPLL 611

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT------PSG 722
            EA  LVQ      R  +  +  +    I AD   + Q+ LN++ NA            G
Sbjct: 612 QEAADLVQAGL-RNRTRLTLALPDAPIWIEADPTDILQVVLNLVINARDAISTAPPREGG 670

Query: 723 GQIIISTT----------------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
            +I ++                        V + V D+G G+      K  +P+     +
Sbjct: 671 HEISVTLAPAGPAQLVQTYAVGAPCADRRYVSMTVSDSGPGIEPAMQAKVFQPYFSTKGA 730

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY--DTSHPHD 818
                 GTGLGL +   ++ AN G   + S P +GT   +++P+   D + P D
Sbjct: 731 A-----GTGLGLAIVTGVLTANHGAIALQSAPGEGTRFTVLWPVKPPDAAAPSD 779



 Score = 77.8 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 29/412 (7%), Positives = 81/412 (19%), Gaps = 24/412 (5%)

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY 246
                       R       +  +     + E+            P L        L ++
Sbjct: 13  RDQQRALEEERSRTQAALQVMPHMLIELDADERLLRGHPGWLDRLPTLGPMAPGQGLQDF 72

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
                          + +  + +             +                  +    
Sbjct: 73  LPVDLATEVRRVLAEVETTGAPVSRDWQVRQAGARVWLAISAARLPPLAPDRRPGHAVMI 132

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGG 365
              +      +  +   +          V      + + N +F   T +           
Sbjct: 133 CDTTELHAQRKQADRLGKFAQLTTNLVIVTDPHQRIEWVNAAFEQQTGHSGPSVRGQPLC 192

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
               +   + +       +    ++     A                +        +   
Sbjct: 193 A---VLQGEPAPGGCGDRLRAMLAEGRTARAEVEATAAC---GRRFWLDVSLQPLLDDEG 246

Query: 426 ENMPQNGIEPEDVDTRINKRKM-------EIEVMQLCSILEATSDGIAIINREGIILSTN 478
                  +  +    +  + ++            +L + ++   DG A  + E  ++  N
Sbjct: 247 ALDGYMAVASDITAHKRQEEQLAAMAAEARATRARLAAAVDVLPDGFAYFDAEDRLVVFN 306

Query: 479 RAVSKLF-GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG------ 531
                 + G     +    F   L Q   S             L   L     G      
Sbjct: 307 PQYRDCYPGAAAAIVPGASFEQILRQAVQSGDILEARGREEEWLAARLAAHHRGSNQQEQ 366

Query: 532 STKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
              + + L +   I++            D++  K  + +           S 
Sbjct: 367 QLADGRWLRV---IERQTPDGGRVGLRVDVTALKLAEQRTRIDFSATMDASQ 415


>gi|166367112|ref|YP_001659385.1| two-component hybrid sensor and regulator [Microcystis aeruginosa
           NIES-843]
 gi|166089485|dbj|BAG04193.1| two-component hybrid sensor and regulator [Microcystis aeruginosa
           NIES-843]
          Length = 731

 Score =  278 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 76/256 (29%), Positives = 124/256 (48%), Gaps = 7/256 (2%)

Query: 559 HDISEWKQEK--NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            DI E +  +   +L      AE  +  KS+FL  +SHE+ TPLT IIG S  ++     
Sbjct: 339 KDIFERRVIERTQELQDTLMAAEAANLCKSEFLNNISHELLTPLTCIIGLSSTLQKCSAA 398

Query: 617 P--LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
              L   +   Y   I  +GN +L+++NDLL+ S++ +GK  L  +  SL    +  + +
Sbjct: 399 NNFLPPDKQKHYLKVIQDNGNKLLELINDLLNFSQVSAGKAVLDIKQFSLKYLCNHVLEI 458

Query: 675 VQLYANEKRILIRTS--FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
           ++  A  K I +              AD   V+QI L +L NA+ FTP  G + +     
Sbjct: 459 IKTEAETKEINLILEMKITEKEHYFYADYDRVQQILLYLLKNALKFTPEQGAVTLRL-WK 517

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
              +VI +V DTG+G+   ++    + F Q+  S++ R  G GLGL L K +V+ + G  
Sbjct: 518 EGSQVIFQVEDTGIGIPAQKIPLLFEKFTQLDGSRKRRYGGVGLGLALTKQLVELHRGTI 577

Query: 793 YIFSTPAKGTLIEIIF 808
            + S   KG++  +  
Sbjct: 578 EVESCLDKGSIFTVRL 593


>gi|150018636|ref|YP_001310890.1| sensory histidine kinase AtoS [Clostridium beijerinckii NCIMB 8052]
 gi|149905101|gb|ABR35934.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Clostridium beijerinckii NCIMB 8052]
          Length = 607

 Score =  278 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 71/357 (19%), Positives = 154/357 (43%), Gaps = 27/357 (7%)

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           I+E+  DGI  I+ +  I   N A   + G   +D++   +      N  + +   + E 
Sbjct: 266 IMESMVDGIITIDNDEKITEINAAAWSIMGLN-KDVIGINYKDLFSGN--AKVLDIVLET 322

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSH 573
           L +   + +      +  +  ++ + +    L  ++      L   D+SE K  ++ +  
Sbjct: 323 LRVGK-KIIGYEVEFTRSDGAIIPISVSTSMLCNNNNVLGVVLVFKDLSEHKAFEDYVRR 381

Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
             ++A        +  A V+HEIR PL+AI G  +++ ++      +     + N + + 
Sbjct: 382 LDRLA-----AVGELAAGVAHEIRNPLSAISGSVQILVDEL---PKDNSTRIFGNVVLKE 433

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693
            + +  ++ DLL  +K        +   ++++E V  ++ L+     ++ +++ T F  +
Sbjct: 434 VDRLNGVIEDLLYFAKPS----KHYVTSININELVENSLFLLLPSIKKEIVVLETHFDQS 489

Query: 694 IPRILADLRSVKQIALNILSNAIHFTP-SGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752
           I  I  D + +KQ+ +N+L NA    P   G+I ++T       + + + D G G+    
Sbjct: 490 IETISVDAQLIKQVLVNLLLNATQAMPQENGKITVTTQRVIKG-IEIIIEDNGKGIDQES 548

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           L +   PF    ++      GTGLGL ++  +++ + G     S    G+   +  P
Sbjct: 549 LPRIFDPFFTTKDT------GTGLGLAVSNKIIEIHQGYIRAESIVGIGSTFTLYLP 599


>gi|284052131|ref|ZP_06382341.1| periplasmic sensor signal transduction histidine kinase
           [Arthrospira platensis str. Paraca]
 gi|291570319|dbj|BAI92591.1| two-component sensor histidine kinase [Arthrospira platensis
           NIES-39]
          Length = 573

 Score =  278 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 80/271 (29%), Positives = 137/271 (50%), Gaps = 22/271 (8%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I    Q   +L  AK  AE  +  KS FLA +SHE+RTPL AIIG+SE++  +    LG 
Sbjct: 299 IKRVAQYTEELQKAKIAAEAANRSKSVFLANMSHELRTPLNAIIGYSEMLHEESKD-LGY 357

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
             ++     I  +G  +LD+++D+LDISKIE+G + L+ E  ++ + + + ++       
Sbjct: 358 DDFLPDLERIQTAGKHLLDMISDILDISKIEAGHVTLYLEDFAVQQLIDDVVATATPLTE 417

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN------ 734
           + +  ++   A ++  + ADL  V+Q+ LN+LSNA  FT  G  I +     +       
Sbjct: 418 KNQNALKVKTAKDLGTMYADLPKVRQVLLNLLSNASKFTDKG-TITLQVQRVTKIPNEWK 476

Query: 735 --------------EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
                         + ++ +V+DTG+GM   +++   K F Q   S   R  GTGLGL +
Sbjct: 477 KDTSNAERFASAKTQYLVFQVKDTGIGMNQEQVQHIFKAFIQADASTTKRFGGTGLGLAI 536

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
           ++ + +   G  Y+ S    G+   +  P++
Sbjct: 537 SQRLCEILGGGIYVKSREGVGSTFVVWLPVH 567


>gi|192290576|ref|YP_001991181.1| integral membrane sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris TIE-1]
 gi|192284325|gb|ACF00706.1| integral membrane sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris TIE-1]
          Length = 531

 Score =  278 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 103/249 (41%), Positives = 156/249 (62%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I+E +Q K     A+  AE  +  KS FLA++SHE+RTPL AI+GFSEV+K++ FG    
Sbjct: 240 IAELEQSKAISDEARHRAEAANVAKSRFLAQMSHELRTPLNAILGFSEVMKSEIFGAHAV 299

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
           P Y +Y+  I  SG  +L+++N++LD+S+IE+G+  L+ E +SL   V++   L++L A 
Sbjct: 300 PAYKDYSADIHNSGVHLLNLINEILDLSRIEAGRYELNEEAISLVHVVTDCHHLLKLRAT 359

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
            + I I   F   +PRI  D R+V+Q+ LN+LSNAI FTP GG+I +    T++    L 
Sbjct: 360 SRGITIHEVFEQGMPRIWGDERAVRQVVLNLLSNAIKFTPQGGEIWLKAGWTASGGQYLS 419

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V+DTG G+   E+   +  FGQ  NS +   +G GLGLP+AK+++D + G F + S    
Sbjct: 420 VKDTGSGIPEEEIPIVLASFGQGSNSIKSAEQGAGLGLPIAKSLIDMHGGTFTLKSKLRI 479

Query: 801 GTLIEIIFP 809
           GT + + FP
Sbjct: 480 GTEVIVTFP 488


>gi|114797839|ref|YP_759129.1| putative tyrosine kinase DivL [Hyphomonas neptunium ATCC 15444]
 gi|114738013|gb|ABI76138.1| putative tyrosine kinase DivL [Hyphomonas neptunium ATCC 15444]
          Length = 815

 Score =  278 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 109/750 (14%), Positives = 253/750 (33%), Gaps = 47/750 (6%)

Query: 85  FTWNIDA---HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK--- 138
             W  DA    G   EI+   P+  G+       +   D +  +  DP   I + L    
Sbjct: 65  LVWQGDALELDG--DEITP--PELYGSPVALAGLLSFTDDA--ISPDPAVRIVEGLADLE 118

Query: 139 ----RQNTWYGKTTLWPIEGTNLYVPIDLAALPIY--SRNREFSGFRGFGIVHVNR---- 188
                      +  L  +  +     + +          +   +G R    ++       
Sbjct: 119 ARDSAGQDTTLRIRLRELRESGQPFSLTIIGTSGRFLEADGRTAGVRAVVWINDTTIKGL 178

Query: 189 ----VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244
                        + + +  +   ++             +   Q   P   ++       
Sbjct: 179 EESSARGKLEEARQVIARDPTAFLDMLGKAPFPAWRVSGMGRLQWANPAY-IEAVDGGNL 237

Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
           +    +  +L            +   E ++   I +N   +     T   +         
Sbjct: 238 DRVLERQLMLDQAVSEQARKTITDGAEHDETRHIVVNNQRRAMRVLTFALSGGAGCMAFD 297

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIA 363
                +     +       ET++       ++     L + N +F  +   +    ++  
Sbjct: 298 VTEQENSREELNRHVRAHDETLNHVADAVAIFGPDRKLNFYNKAFRDMWDLEETFLLDRP 357

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
                L             P  +  ++      S  L       +              Q
Sbjct: 358 SHGQLL----DRLREKKKLPARMNYAEWRAEEISYYLDIDGVKEDKWSLPDNRTLSVTRQ 413

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
                    +  +  D    + +    +    S L+   + +A+   +G +   NRA  +
Sbjct: 414 RHPMGGLLVLFKDITDHLSLQTRFNALIKTQSSTLDNLHEAVAVFGSDGRLRLHNRAFER 473

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHY-LTEILSLDLRQTLEKITLG---STKEEKLL 539
           ++  P + +  +P    +      + +   + + + + +     + +        +  LL
Sbjct: 474 VWDIPADRLKDRPDYADVISGCVPLFHDMDIWDAIKVHITDPTARQSTTGEMRRSDGSLL 533

Query: 540 SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
           +               +   D++  ++ ++ L    +  E     K++F+  VS+++R+P
Sbjct: 534 TYLTHPLP---DGNTMIAFADVTATRRVESALRDRAEAFEAADRLKTEFVRNVSYQLRSP 590

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           LT I G++E+++ QR GPL   R  ++   I  + + +  ++ ++LD++ IE+G+++L  
Sbjct: 591 LTTIFGYAELLETQRNGPLT-ERQTDHVRAILSASDHLNKLIENILDLALIEAGRLDLEL 649

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719
             + L+E + +++ LV   A +  + +R      + ++  D R +KQ+  N++SN++ FT
Sbjct: 650 SELDLEEVIHQSVELVVSKAEDTEVSVRADITGRLGQMRGDERRIKQVLFNLISNSLRFT 709

Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
             GG+I++S      + + L VRD G G+   +   +   F            G GLGL 
Sbjct: 710 EPGGEIVVS-AQRMGDMITLSVRDNGSGLEADKRATSFDSFVSGDQ------RGAGLGLA 762

Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           L K  +  + G   + S    G  +    P
Sbjct: 763 LVKHFIHLHGGTVGMKSVDGGGLEVTCWLP 792


>gi|300936942|ref|ZP_07151826.1| response regulator receiver domain protein [Escherichia coli MS
           21-1]
 gi|300457948|gb|EFK21441.1| response regulator receiver domain protein [Escherichia coli MS
           21-1]
          Length = 1197

 Score =  278 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 89/419 (21%), Positives = 163/419 (38%), Gaps = 12/419 (2%)

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
            W+  +                  +    +       ++ +  +E ++    ++ ++  +
Sbjct: 528 TWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISFRKALSDSLPN 587

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--NTPSVMNHYLTEILSLDL 521
              ++N +G ++S N A    F          P         +  S  +    E      
Sbjct: 588 PTYVVNWQGNVISHNSAFEHYFTADYYKNAMLPLENSDSPFKDVFSNAHEVTAETKENRT 647

Query: 522 RQTLEKIT-LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
             T       G  K        +        + Y     DI+E +   + L   +  A  
Sbjct: 648 IYTQVFEIDNGIEKRCINHWHTLCNLPASEHAVYICGWQDITETRDLIHALEVERNKAIN 707

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            +  KS FLA +SHEIRTP+++I+GF E++       L   + +E  +    +G  +L +
Sbjct: 708 ATVAKSQFLATMSHEIRTPISSIMGFLELLS---GSGLSKEQRVEAISLAYATGQSLLGL 764

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILA 699
           + ++LD+ KIESG   L  + V +   V          A  K I +  S       ++  
Sbjct: 765 IGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPEHYQVKI 824

Query: 700 DLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMTNYELEKA 756
           D ++ KQ+  N+LSNA+ FT  G  +I  S  H  +   ++   + D+G G++  E ++ 
Sbjct: 825 DPQAFKQVLSNLLSNALKFTTEGAVKITTSLGHIDDNHAVIKMTIMDSGSGLSQEEQQQL 884

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            K + Q   S   +  G+GLGL + K ++    G   + S P  GT   I  P+  T  
Sbjct: 885 FKRYSQT--STGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVEITQQ 941


>gi|260779461|ref|ZP_05888351.1| sensory box histidine kinase/response regulator [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260604270|gb|EEX30574.1| sensory box histidine kinase/response regulator [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 1205

 Score =  278 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 74/250 (29%), Positives = 124/250 (49%), Gaps = 10/250 (4%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
             ++  +KL+ A+  A+  +  KSDFLA +SHEIRTP+ AIIG S +             
Sbjct: 459 ALERFADKLALARDDADAANKAKSDFLANMSHEIRTPMNAIIGMSYLALKTDLSKA---- 514

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
              Y   +  S + +L ++ND+LD SKIE+GK+++      L+  +    +LV L A+E+
Sbjct: 515 QRNYIQKVKLSADSLLGLINDILDFSKIEAGKLDIENVDFHLENVLDNISNLVGLRASER 574

Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EV 737
            + +      ++P  ++ D   + QI +N+ +NA+ FT  G +I +S      +     +
Sbjct: 575 GLELLIHIDRDVPTALVGDPLRLGQILINLANNAVKFTEQG-EIKVSIALEKKDGNDITL 633

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
              V D+G+GMT  +  K    F Q  +S   +  GTGLGL ++K +     G   + S 
Sbjct: 634 KFSVTDSGIGMTPEQCNKLFNKFTQADSSTTRKYGGTGLGLAISKELCQLMGGDIGVTSE 693

Query: 798 PAKGTLIEII 807
             KG+     
Sbjct: 694 QGKGSTFSFT 703


>gi|237798963|ref|ZP_04587424.1| response regulator receiver:ATP-binding region [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|237806199|ref|ZP_04592903.1| response regulator receiver:ATP-binding region [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|331021817|gb|EGI01874.1| response regulator receiver:ATP-binding region [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|331027312|gb|EGI07367.1| response regulator receiver:ATP-binding region [Pseudomonas
           syringae pv. oryzae str. 1_6]
          Length = 917

 Score =  278 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 76/243 (31%), Positives = 140/243 (57%), Gaps = 8/243 (3%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  A+K A + S  KS+FLA +SHEIRTPL  I+GF+ +++     P    R  +Y   
Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSELTP----RQFDYLAT 325

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I++S + +L I+N++LD SKIE+GK+ L   P +L + + + ++++   A+ K++ + + 
Sbjct: 326 IEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSL 385

Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQI---IISTTHTSNEEVILRVRDTG 745
              + P  +  D   ++QI  N++SNAI FT  G  +   ++      + ++ + V+DTG
Sbjct: 386 VYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAMLEDETEEHAQLRISVQDTG 445

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+++ ++    + F Q  NS   +  GTGLGL ++K +++   G+  + STP +G+   
Sbjct: 446 IGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFW 505

Query: 806 IIF 808
           I  
Sbjct: 506 ISL 508


>gi|307155195|ref|YP_003890579.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 7822]
 gi|306985423|gb|ADN17304.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 7822]
          Length = 404

 Score =  278 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 75/247 (30%), Positives = 134/247 (54%), Gaps = 4/247 (1%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E ++ + +L    +  ++ S  KS FLA +SHE+RTP+ AI+GFS+++  +   PL    
Sbjct: 157 ERQRRQIELQ--NEQLQETSRLKSQFLATMSHELRTPINAIMGFSQMLLRKYPEPLTCA- 213

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             +    I  +   +L ++ND+L  SKIE+GK+ LH   + L +        ++  A  K
Sbjct: 214 QTDLVQRIFDNSKNLLTLLNDVLHFSKIEAGKLLLHPTELDLKQLTVLTTEELRSLAVSK 273

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
            + ++       P+I+ D   +++I +N+LSNAI FT SGG + ++      + + + V+
Sbjct: 274 NLSLQIKVELENPQIVNDQSCLRRILVNLLSNAIKFTESGG-VWVNVWEMRPDWLAIAVK 332

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG+G+   +LE   + F Q   +   +  GTGLGL +++++     GK  + S   KG+
Sbjct: 333 DTGIGIAEEQLEHIFEVFRQADQTLTRKYGGTGLGLAISESLTKMMQGKISVTSELGKGS 392

Query: 803 LIEIIFP 809
           + +I FP
Sbjct: 393 IFQIEFP 399


>gi|120601067|ref|YP_965467.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfovibrio vulgaris DP4]
 gi|120561296|gb|ABM27040.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfovibrio vulgaris DP4]
          Length = 679

 Score =  278 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 104/638 (16%), Positives = 205/638 (32%), Gaps = 38/638 (5%)

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY 246
           + +       G  L + F         HS+  + +  +       P +R    VS   E 
Sbjct: 44  STMTRILTEKGASLIRSFEAGARTGMRHSAGLRLQILLEEMAD-QPDIRFIAVVSPEGEV 102

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
            AH D      +       +      E   T+             L +  +    +    
Sbjct: 103 LAHSDMTRVGTRLFNPDELQRLDAGTEPRWTLLPGDGGDDFVVFRLFDPVRRRAMFTPEG 162

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
              +     D          D+ P                    L+ +     +   G  
Sbjct: 163 GRMAPPPPDDARLEHPD---DQRP----RSRAERFARWRERQEGLSPFPGSLPLPEDGRG 215

Query: 367 ST-LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
            T   +      +       +             L    +    +          A    
Sbjct: 216 DTGRREHGGHGMHGGFDASCMRSPQGPPPVILVGLDMQPFAEARAQDRNHALLMLALAGG 275

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
             +            +  +R++         ++ +  DG+   +REG I   N A + L 
Sbjct: 276 VAVAGVLSLVWSRREQAARRRLMASQAFAAKVVSSLPDGLVAFDREGRIDECNAAGADLL 335

Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
           G      L +  +              +   L                 +   + L +  
Sbjct: 336 GVGASSALGQGASWL------PAPLDAMAAYLLGGGV-LAPTEVECRRADGTSVPLGVRG 388

Query: 546 KKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
            ++           L + D+SE +  + ++   +K+A        +  A V+HEIR PL+
Sbjct: 389 ARIVDDEGRAVGVILLLRDLSEVRHLEAEVRRREKLA-----AVGNLAAGVAHEIRNPLS 443

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           +I G++      RF    + R  E A  + +  + +  +++DL+ +S+      ++   P
Sbjct: 444 SIKGYATYF-GTRFPEGSDDR--EAARVMVQEVDRLNRVISDLIGLSRPS----DIRPRP 496

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
             + + V  A+ LV+  A  +++ +R   A ++P  L D     Q  LN+  N +     
Sbjct: 497 TRVADIVDHALRLVRPDAEARKVAVRFEAAPDVPEALVDPDRFAQALLNVCLNGMEAMGD 556

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           GG+++++     +  V + VRDTG G++   L +   P+         +G+GTGLGL + 
Sbjct: 557 GGELMVTAYRHGDGRVAVSVRDTGPGISPENLSRVFDPYFTT------KGQGTGLGLAIV 610

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819
             +++A+ G+    S P  GT    I P        D 
Sbjct: 611 HKIIEAHGGEVGFRSEPGHGTECTFILPAVHAGATPDI 648



 Score = 54.6 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 26/230 (11%), Positives = 50/230 (21%), Gaps = 10/230 (4%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D  G + E +      +G  A   +G     +   L          LL        +   
Sbjct: 319 DREGRIDECNAAGADLLGVGASSALGQGASWLPAPLDAMA----AYLLGGGVLAPTEVEC 374

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
              +GT+  VP+ +    I        G     ++          A  +R + K + +  
Sbjct: 375 RRADGTS--VPLGVRGARIVDDEGRAVGV--ILLLRDLSEVRHLEAEVRRRE-KLAAVGN 429

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
           +  G +   +         +     R     S   E        +      +      S 
Sbjct: 430 LAAGVAHEIRNPLSSIKGYATYFGTRFPEG-SDDREAARVMVQEVDRLNRVISDLIGLSR 488

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
           P         +             +                  A  D   
Sbjct: 489 PSDIRPRPTRVADIVDHALRLVRPDAEARKVAVRFEAAPDVPEALVDPDR 538


>gi|332994707|gb|AEF04762.1| sensor protein BarA [Alteromonas sp. SN2]
          Length = 1043

 Score =  278 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 79/244 (32%), Positives = 131/244 (53%), Gaps = 9/244 (3%)

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
            +L  A+K A K S+ KS FLA +SHEIRTPL  I+GFS     +           E   
Sbjct: 415 ARLDIARKDAIKASNVKSQFLANMSHEIRTPLNGILGFS----RELTHASLPSDQQEQVR 470

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I+ + + +L IVND+LD SKIE+GK+ ++ +P S +  + E ++++   ++ K++    
Sbjct: 471 IINTAADNLLTIVNDVLDFSKIEAGKLQINNQPFSPNTLLEEMVTIMAKSSHSKKLEFVF 530

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN----EEVILRVRDT 744
             A    +++ D+  +KQI  N+L NA+ FTPSG  I ++           E+ + V DT
Sbjct: 531 DLAPLPEKLIGDVFRIKQILNNLLGNALKFTPSG-TITLAVKGRPLLHGIHEIEITVEDT 589

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G+   + +K    F Q+ +S     +GTGLGL +++ +V    G   + STP +G+  
Sbjct: 590 GIGINRQDRKKLFNAFSQVDDSINRNYQGTGLGLVISRELVRLMRGDLTLKSTPRQGSTF 649

Query: 805 EIIF 808
            +  
Sbjct: 650 VVTL 653


>gi|320354104|ref|YP_004195443.1| PAS/PAC sensor signal transduction histidine kinase [Desulfobulbus
           propionicus DSM 2032]
 gi|320122606|gb|ADW18152.1| PAS/PAC sensor signal transduction histidine kinase [Desulfobulbus
           propionicus DSM 2032]
          Length = 407

 Score =  278 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 78/388 (20%), Positives = 163/388 (42%), Gaps = 23/388 (5%)

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
              ++ +    + +  ++E +  ++ ++L+  +D + ++  +  I   N   +  F  P 
Sbjct: 21  YQELQQKVEQLKGSNLELEKKRKEIQALLDGITDLMVVLAEDLSIQRVNHVFTDWF--PG 78

Query: 490 EDILRKPFTVFLEQNTPSVMN-HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            D + +              +   L  +   ++ + L    +    +   +    +   L
Sbjct: 79  IDPIGRFCYEIFRGQQGRCEDCPALHALDRDEIVKDLCIYKVNDDFKHYEIIASPLKTSL 138

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                  L   D++  K+ + +   A+K+A           A V+HEI  PLTAI GF++
Sbjct: 139 TGERQVLLFKRDVTLEKEFQAQFYQAEKMATV-----GALAAGVAHEINNPLTAINGFAQ 193

Query: 609 VIKNQ---RFGPLGNP---RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
            +K +     G + +     + EY   I +      DIV  LL  S+  +         V
Sbjct: 194 GLKRRISRLQGKIDDDLFCDFKEYTETIIKECLRCRDIVQTLLTFSRPTAS----SRGHV 249

Query: 663 SLDEAVSEAISLVQLYANE-KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           ++++ V++ + +++ +  E   + ++T    ++P IL D   +KQ+ +N+L+NA+  T +
Sbjct: 250 NINQCVTDTLFILKHHFKEQHDLTVKTELQEDLPAILGDESQLKQVIINLLTNALDATSN 309

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           GG I I T       V L + D+G G+     +K  +PF          G+G G+GL   
Sbjct: 310 GGLIQIKTYSDETAGVTLVIEDSGCGIPLELQDKLFEPFFTTKP----VGKGIGIGLSTC 365

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            ++V  + G+  + S    G+   +  P
Sbjct: 366 YSIVKNHNGEINVTSVVGTGSAFRVSLP 393


>gi|220919355|ref|YP_002494659.1| GAF sensor hybrid histidine kinase [Anaeromyxobacter dehalogenans
            2CP-1]
 gi|219957209|gb|ACL67593.1| GAF sensor hybrid histidine kinase [Anaeromyxobacter dehalogenans
            2CP-1]
          Length = 1847

 Score =  278 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 72/295 (24%), Positives = 139/295 (47%), Gaps = 15/295 (5%)

Query: 521  LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL-----SHAK 575
            +   +    L    +   + L     +L   +          E K  + +L         
Sbjct: 1392 ISSNMRMEGLLLELKRSNVELEAQAAELNEKARLL-------EQKNSEVELASRSLEEKA 1444

Query: 576  KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
            +  +  S +KS+FLA +SHE+RTPL +++  S+++   R G L  P  +++A+ +  SG+
Sbjct: 1445 EQLQLISRYKSEFLANMSHELRTPLNSLLILSKMLAENRDGNLT-PEQVKFASTVYTSGH 1503

Query: 636  LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695
             +L ++N++LD+SKIE+GKM +      L+    +     +  A  K +  +     ++P
Sbjct: 1504 ELLGLINEILDLSKIEAGKMPIEPRDTRLEAVRDDLEQTFRHVAEHKGLGFQVRMGPDLP 1563

Query: 696  R-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELE 754
              I  D   + QI  N++SNA  FT  G ++++     +   +   VRDTG+G+   + +
Sbjct: 1564 ERIHTDPTRLLQILKNLISNAFKFTERG-EVVLDVGPAAGGALAFAVRDTGIGIAADKQK 1622

Query: 755  KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
               + F Q   +   +  GTGLGL +++ +     G   + S P +G++  ++ P
Sbjct: 1623 LIFEAFQQADGTTSRKYGGTGLGLTISREIARLLGGSIEVESAPGRGSVFTLVLP 1677


>gi|85703660|ref|ZP_01034764.1| two-component hybrid sensor and regulator [Roseovarius sp. 217]
 gi|85672588|gb|EAQ27445.1| two-component hybrid sensor and regulator [Roseovarius sp. 217]
          Length = 711

 Score =  278 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 82/252 (32%), Positives = 138/252 (54%), Gaps = 6/252 (2%)

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            ++   +L  A+++A   +  KSDFLA++SHEIRTP+  IIG ++++      P      
Sbjct: 188 LRRLITRLEEAREVAVIANDAKSDFLAKMSHEIRTPMNGIIGMADMLSETDLTP----EQ 243

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
             Y + + RSG+ +L I+ND+LD SKIE+GK+ L  EP  L E V +   L+   A  K 
Sbjct: 244 DSYVSTMVRSGDALLTIINDILDFSKIEAGKLTLASEPYRLREIVEDVTQLLAPLAARKG 303

Query: 684 ILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           +++ +  A ++P I+  D   ++QI +NI  NA+ FT  G  + +  +     ++++RV 
Sbjct: 304 LMLYSDVAPDLPEIMLGDAGRLRQILVNIAGNAVKFTLEG-HVALRASAGGPGQIVIRVH 362

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D+GVG+ + + +K    F Q+ N+      GTGLGL +++ +V    G   + S   +GT
Sbjct: 363 DSGVGIPSDQQDKVFTAFEQVDNTATRSFGGTGLGLAVSRQLVTLMGGTLTLHSREGEGT 422

Query: 803 LIEIIFPLYDTS 814
             +I  PL    
Sbjct: 423 RFDITLPLIPQE 434


>gi|221197447|ref|ZP_03570494.1| periplasmic sensor hybrid histidine kinase [Burkholderia
           multivorans CGD2M]
 gi|221204120|ref|ZP_03577138.1| conserved hypothetical protein [Burkholderia multivorans CGD2]
 gi|221176286|gb|EEE08715.1| conserved hypothetical protein [Burkholderia multivorans CGD2]
 gi|221184001|gb|EEE16401.1| periplasmic sensor hybrid histidine kinase [Burkholderia
           multivorans CGD2M]
          Length = 1029

 Score =  278 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 109/674 (16%), Positives = 222/674 (32%), Gaps = 57/674 (8%)

Query: 169 YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228
           YS +++ +      +V         R    R       L  I    S         +   
Sbjct: 108 YSSDQQIAITPYPSVVFGVPGQTADRREVARYLSLSVLLARICAASSINRGYALIGYHYS 167

Query: 229 SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288
           +      +           A  D+  +T     +   ++             +      +
Sbjct: 168 TRTAMFGLVPNSRGDGAGLATPDERARTLDALRIDFGDAP----PSAGHGRPHVRWLPPF 223

Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSF 348
              +    +      +  +    +    E        +   P      +    F+   + 
Sbjct: 224 IDPVSGERRIRIAAQAQVDGEPFAVLVTEYAPDY--LLSWVPS----NAADGTFFVTTAD 277

Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
             L         + A     L         +A +PV         +     L    W   
Sbjct: 278 NRLVTAGPGVAHDDARIARLLDLDVAREPGDADEPVFR----GGHVVFRGTLDKTGWTLA 333

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPED------------VDTRINKRKMEIEVMQL-C 455
            +L+ T I    A +    +  + +                +     + +   +   L  
Sbjct: 334 YALSWTHIAATVALRAGLLLGASLLTIAIMWVLLVRFHHRVLAGVYARSQRVFDSESLCR 393

Query: 456 SILEATSDGIAIINR-EGIILSTNRAVSKL---FGYPVEDILRKPFTVFLEQNTPSVMNH 511
           S++E +  G+ +I+R +G  +  +  +++     G     +  +  T +    + +    
Sbjct: 394 SVIEMSPIGLGLISRADGRFMLVSPVLAERVARLGCDCGTLSAQILTQYRAGASNAPFQI 453

Query: 512 YL----TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQE 567
            L     +  +      L    +                +   S    + + D++  +Q 
Sbjct: 454 ELVLPDAQAAAGADAPPLHLEVIARDA------------RYQGSDVLIVAVVDVTAKRQL 501

Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
             KL  A + A+  ++ KS FLA +SHEIRTPL  I+G  E+++                
Sbjct: 502 VQKLEEAVRAADSANAAKSSFLAAMSHEIRTPLNVILGNLELLERSVLDLP----QRSRV 557

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
             +  + + +L++V+ +LD +K+E+G M +          ++  +      A  K + + 
Sbjct: 558 QTLRNAASGLLELVSGILDFTKVEAGAMPVESIEFDAIGVIARELGAYAPVAKAKGLPLF 617

Query: 688 TSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVR 742
              A +  + +  D   + Q+  N+LSNAI FT + G +         E    E+ + + 
Sbjct: 618 CEIAASASQRMRGDPTRLAQVFGNLLSNAIKFT-AHGHVTARLRAVRGECGTAELAIAIE 676

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG+G+ + +L K  + F Q+  +   R  GTGLGL L   +V A  G+  + S P  G+
Sbjct: 677 DTGIGIGSADLHKLFRAFSQVDATIARRYGGTGLGLALCDRLVTAMGGRIAVTSAPGAGS 736

Query: 803 LIEIIFPLYDTSHP 816
              +  PL     P
Sbjct: 737 CFTVRLPLGLDVEP 750


>gi|160885979|ref|ZP_02066982.1| hypothetical protein BACOVA_03984 [Bacteroides ovatus ATCC 8483]
 gi|156108792|gb|EDO10537.1| hypothetical protein BACOVA_03984 [Bacteroides ovatus ATCC 8483]
          Length = 628

 Score =  278 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 111/522 (21%), Positives = 203/522 (38%), Gaps = 28/522 (5%)

Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSV 357
             E     +  S        E L        PI   +Y   G L   N   L +   +  
Sbjct: 117 ISEVQDGPDMASAYQALQYSERLLSNIFKYLPIGIELYDMDGVLVDLNDKELEMFHIEKK 176

Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
           +D+         +   ++ +         +          +     Q     ++ +    
Sbjct: 177 EDVLGINIFENPIFPKEMKERLKKNEDADFTFRYDFSKVGSYYQNTQKQG--TIDLVTKV 234

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA---IINREGII 474
               N   + +    I  +  +T +   K++        + +    G A   +++  G  
Sbjct: 235 TTLYNSEHQPINYLLINADKTETTVAYNKIQEFEEFFELVGDYAKVGYAHFNVLSGHGYA 294

Query: 475 L-STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
             S  R V + +  P+ DI           +  +++  +L +     L   L K      
Sbjct: 295 QKSWYRNVGEAYETPLSDIFGT--YRHFHPDDRALLIRFLDDAR-NGLTTQLSKEMRVLR 351

Query: 534 KEEKLLSLRII--IKKLPFSSCYSLTMH---DISEWKQEKNKLSHAKKIAEKESSHKSDF 588
           ++       +   +KK          +    DI+E K+ +  L  A+  AE     KS F
Sbjct: 352 EDGTYTWTHVNLLVKKYAPQDRIIEIISINYDITELKRTEEMLVKARDKAEASDRLKSAF 411

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
           LA +SHEIRTPL AI+GFS ++ +             Y + I  +  L+L+++ND++D+S
Sbjct: 412 LANMSHEIRTPLNAIVGFSSLLTSTENAA----EKELYNSLIGHNNKLLLNLINDVIDLS 467

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIA 708
           KIESG + L  + V+L E + E+++          + + T++  +   +  D   +KQI 
Sbjct: 468 KIESGYLELRPDWVNLTELLDESVAEYAHQVPS-GVELLTNYPAHDSLVELDSLRIKQIL 526

Query: 709 LNILSNAIHFTPSGGQIIISTTHT-SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
            N LSNA+  T +G    +   +   ++ V + V+DTG G+    LEK  + F ++ +  
Sbjct: 527 SNFLSNALKNTTTG---HVEVFYEVDHQSVRIGVKDTGRGIPQNMLEKIFERFEKLDSF- 582

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
               +G GLGL + K +V+   G+  + S    GT   I  P
Sbjct: 583 ---AQGAGLGLSICKLIVEKMNGRVLVDSQLGIGTTFVIELP 621


>gi|33323031|gb|AAQ07255.1| putative sensor kinase PK4 [Oryza sativa Japonica Group]
          Length = 653

 Score =  278 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 74/243 (30%), Positives = 120/243 (49%), Gaps = 11/243 (4%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L   KKIAE     K  FLA +SHEIRTPL AIIGF+E++         + +   +   
Sbjct: 162 ELLRQKKIAESAVLAKESFLANMSHEIRTPLNAIIGFTELLSGTPL----DKQQQAFIQD 217

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           +  +G  +L IVND+LD+SKIESG ++L  +P +L +++     L+++   +  +     
Sbjct: 218 VQTAGENLLLIVNDILDLSKIESGGLSLEKQPFNLKKSLRHVYDLLKVKTAD-GVEFNLY 276

Query: 690 FANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIST----THTSNEEVILRVRDT 744
               +P ++  D   + QI +N+  NA+ FT  G ++ IS         +  +   V+DT
Sbjct: 277 LDAELPDVITGDQGRLNQIMVNLAGNALKFTNEG-EVTISVKNKGETEDSYTIRFSVKDT 335

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G+    LE   + F Q       +  GTGLGL + K +V  +  K  + S    G+  
Sbjct: 336 GIGIPKEHLESIFERFTQGQEDTTRKFGGTGLGLSIVKELVKLHDSKIQVKSREGAGSEF 395

Query: 805 EII 807
              
Sbjct: 396 FFT 398


>gi|89099327|ref|ZP_01172204.1| two-component sensor histidine kinase [Bacillus sp. NRRL B-14911]
 gi|89085936|gb|EAR65060.1| two-component sensor histidine kinase [Bacillus sp. NRRL B-14911]
          Length = 529

 Score =  278 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 89/374 (23%), Positives = 153/374 (40%), Gaps = 25/374 (6%)

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            ++ +E     + +  + TSD I I + E  IL  N + S LF     +         + 
Sbjct: 174 ARKDLESTRSYIDAFFDNTSDSIVIADAEKRILRMNNSFSLLFHSTAPE-PGDSLETIIA 232

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL--TMHD 560
                 ++  L   L        E    G + E  +L   +          +++   + D
Sbjct: 233 DENGK-ISDMLDSALLGRSISGAELSFPGVSDEPSVLEATVSPVYNAQHKIFAVSMVIRD 291

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           + E K+ +  L +++K+         +  A V+HEI+ PLT I GF ++I  +       
Sbjct: 292 VIEKKKLEEYLRNSEKLKVT-----GEMAASVAHEIKNPLTVISGFIQMIGEKEND---- 342

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
             Y +Y + I      +  I+N+ L +SK  +  M        L+  ++E   L +  A+
Sbjct: 343 --YRQYISIIHSELERMNGIINEFLYLSKPHTPNMKPQP----LEPLLNETALLFESEAH 396

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
            K + +          +L D   +KQ  +N++ N+I   P GG + IS   TS  E  + 
Sbjct: 397 YKNVHLLKDILPGCGTVLCDTGKLKQACINLVQNSIDAMPEGGVVKISCRQTSTGEARIL 456

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           + D+G GM    L+   KPF     S      GTGLGL + + ++  + G+  I S    
Sbjct: 457 IEDSGCGMPEELLQNIKKPFFTTKES------GTGLGLMITEQIIQQHKGRLSITSRMGS 510

Query: 801 GTLIEIIFPLYDTS 814
           GT  EI  PL+   
Sbjct: 511 GTTAEIHLPLFKED 524


>gi|302877992|ref|YP_003846556.1| PAS/PAC sensor signal transduction histidine kinase [Gallionella
           capsiferriformans ES-2]
 gi|302580781|gb|ADL54792.1| PAS/PAC sensor signal transduction histidine kinase [Gallionella
           capsiferriformans ES-2]
          Length = 640

 Score =  278 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 87/520 (16%), Positives = 187/520 (35%), Gaps = 43/520 (8%)

Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
                +E E      +D      + +     +   N  +  +                 L
Sbjct: 143 AQKKLEESERRLRYVLDATGEGVWDWDIKSGIVTHNSQWCKIAGMDDNYLQHPVEEFGQL 202

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI-PFEKANQFPENM 428
           L      D+ A     L           +  H ++      + +       + +     +
Sbjct: 203 LHE----DDRARVFDALQNCLNGHGHYQSE-HRMRMPGNRIVWVLDRGDVVERDSEGTAL 257

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
              G   +    +  +  + +    L +I E + DG    +    I   + A +++ G  
Sbjct: 258 RMVGSFVDITKRKEIELALGVRTELLDAIFELSPDGFISFDEAHCISYVSPAFTRMTGLH 317

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE-----EKLLSLRI 543
              +              +  +  LT +          +       +      +++ L  
Sbjct: 318 AAQLQGMN---------EAQFSDLLTRLCVAGTHFKGVQKLRAPASDKLPDTRQIIELSH 368

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
           + K++      S T   +S+                +    KS+FL+  +HE+RTP+ +I
Sbjct: 369 VGKRILEVGLRSSTTSSVSQI-----LYFREITHETELDQLKSEFLSTAAHELRTPMASI 423

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK-MNLHFEPV 662
            GF+E++ +  F         E+   I +   L+  I+N+LLD+++IE+ +  +   E +
Sbjct: 424 YGFAELLLSHDF---DEESRREFLTIILKQSELMTSILNELLDLARIEARRGKDFVIEIL 480

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
                +++ +        E R             ++AD +   Q  +N+LSNA  ++   
Sbjct: 481 PAQALITQVVRSF--ILPEGRRAPALKMPGTTVFLMADHKKTYQAIVNVLSNAYKYSS-- 536

Query: 723 GQIIISTTHTSN------EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
           G++ I   +           V +R+ D G+GMT  +  +  + F +  +S   +  GTGL
Sbjct: 537 GEVNIELINEPQPASLSTAAVGIRIIDCGIGMTPEQQSRVFERFYRADSSG--KITGTGL 594

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           G+ + + +V  + G+  + ST  KGT + + FP  +++ P
Sbjct: 595 GMSIVQEIVLLHGGQVTLESTIGKGTSVTLWFP-AESNLP 633



 Score = 88.2 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 34/279 (12%), Positives = 84/279 (30%), Gaps = 18/279 (6%)

Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
           L +      +L    +D+ P    +    G     N +   L      +      G    
Sbjct: 16  LRSELVRAYDLLRTVIDENPNIILMKDWDGKFLIGNRALANLYGTTPENLEGKDDGA--- 72

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI-PFEKANQFPENM 428
              P           +     +          T     E     +   P   A+   +  
Sbjct: 73  -FNPNAEQVAFYLQNVREIMSQPATQIVMEESTNNATGETHYYQSIKKPLVSADGKKQ-- 129

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
               I  +  + ++ ++K+E    +L  +L+AT +G+   + +  I++ N    K+ G  
Sbjct: 130 -ILVIANDVTELKLAQKKLEESERRLRYVLDATGEGVWDWDIKSGIVTHNSQWCKIAGMD 188

Query: 489 VEDILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
              +    + F   L ++  + +   L   L+       +          +++ +     
Sbjct: 189 DNYLQHPVEEFGQLLHEDDRARVFDALQNCLNGHGH--YQSEHRMRMPGNRIVWVLDRGD 246

Query: 547 KLPFSS-----CYSLTMHDISEWKQEKNKLSHAKKIAEK 580
            +   S         +  DI++ K+ +  L    ++ + 
Sbjct: 247 VVERDSEGTALRMVGSFVDITKRKEIELALGVRTELLDA 285



 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/385 (8%), Positives = 96/385 (24%), Gaps = 26/385 (6%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD-----ILHIDPNNHIGDLLKRQNTWY 144
           D  G     +  L    G     + G      +        ++     I           
Sbjct: 42  DWDGKFLIGNRALANLYGTTPENLEGKDDGAFNPNAEQVAFYLQNVREIMSQPAT-QIVM 100

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            ++T      T+ Y  I     P+ S + +    +   I +        +   +  +++ 
Sbjct: 101 EESTNNATGETHYYQSI---KKPLVSADGK---KQILVIANDVTELKLAQKKLEESERRL 154

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPP------PHLRMKNKVSSLTEYYAHKDDVLKTEK 258
            ++ +           K  I +  S            +++ V    +     D     + 
Sbjct: 155 RYVLDATGEGVWDWDIKSGIVTHNSQWCKIAGMDDNYLQHPVEEFGQLLHEDDRARVFDA 214

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE-----SFEYLSHRNHPSLSA 313
                +       +                   ++ +S+         ++       +  
Sbjct: 215 LQNCLNGHGHYQSEHRMRMPGNRIVWVLDRGDVVERDSEGTALRMVGSFVDITKRKEIEL 274

Query: 314 YFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIE-IAGGLSTLLD 371
                  L     +  P  F  +   + + Y +P+F  +T   +           S LL 
Sbjct: 275 ALGVRTELLDAIFELSPDGFISFDEAHCISYVSPAFTRMTGLHAAQLQGMNEAQFSDLLT 334

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
              ++  +      L       +  + ++  +    +  L +        +   + +   
Sbjct: 335 RLCVAGTHFKGVQKLRAPASDKLPDTRQIIELSHVGKRILEVGLRSSTT-SSVSQILYFR 393

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCS 456
            I  E    ++    +     +L +
Sbjct: 394 EITHETELDQLKSEFLSTAAHELRT 418



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/151 (13%), Positives = 51/151 (33%), Gaps = 3/151 (1%)

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
               + ++      L ++++   + I + + +G  L  NRA++ L+G   E++  K    
Sbjct: 13  EHKLRSELVRAYDLLRTVIDENPNIILMKDWDGKFLIGNRALANLYGTTPENLEGKDDGA 72

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---YSL 556
           F                +       +      +    +    + I K L  +       +
Sbjct: 73  FNPNAEQVAFYLQNVREIMSQPATQIVMEESTNNATGETHYYQSIKKPLVSADGKKQILV 132

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
             +D++E K  + KL  +++          +
Sbjct: 133 IANDVTELKLAQKKLEESERRLRYVLDATGE 163


>gi|225849089|ref|YP_002729253.1| alkaline phosphatase synthesis sensor protein PhoR
           [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644480|gb|ACN99530.1| alkaline phosphatase synthesis sensor protein PhoR
           [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 332

 Score =  278 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 73/357 (20%), Positives = 151/357 (42%), Gaps = 37/357 (10%)

Query: 454 LCSILEATSDGIAIINREGI-ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
           L + L+   +GI I++ E   I   NR   K      E+   K F   ++         Y
Sbjct: 10  LITFLDFLKEGIIIVDDETKVIEFVNRFAKKFL--KDENYEGKNFKEVIDN-------DY 60

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572
           +  ++S +  + ++       ++       I + ++       + + DI+          
Sbjct: 61  IYSLISYNQEKDVKAEVNIDNQK-----YLINVYRIEGKK--IIHIQDIT---------- 103

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
                 E     K DF++ VSHE++TP++ +    E I+ ++   +      ++ N   +
Sbjct: 104 ----PFEVYKQAKKDFVSNVSHELKTPISVLKSAVETIEEEKDPVM----IKKFVNIAKK 155

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
               +  ++NDLL ++++ES +  +  E   L + + E    ++    EK I +     N
Sbjct: 156 RIEQMDHLINDLLILARLESQEDQVKKERYDLHKQIEEIFEDLKHLTEEKEIQLINQVPN 215

Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752
               + AD + +     N++ NAI +    G++I+      ++   + V DTG+G+    
Sbjct: 216 KF-DVYADEQKLSIALKNLIENAIKYNKQNGKVIVK-AVKDSKYTTITVEDTGIGIPEES 273

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +    + F ++  S+     GTGLGL + K + +A+ GK ++ S   +G+   I  P
Sbjct: 274 IPLIFERFYRVDKSRSRNIGGTGLGLSIVKHITEAHKGKVWVESKLGEGSKFFIKIP 330


>gi|113971043|ref|YP_734836.1| PAS/PAC sensor signal transduction histidine kinase [Shewanella sp.
           MR-4]
 gi|113885727|gb|ABI39779.1| PAS/PAC sensor signal transduction histidine kinase [Shewanella sp.
           MR-4]
          Length = 432

 Score =  278 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 68/370 (18%), Positives = 149/370 (40%), Gaps = 33/370 (8%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           R    ++   + +     EA  D   +++ E  IL  N+    + G+       +     
Sbjct: 87  RRRVGQLAALLGRFRQGAEALPDAAVVLDSEHNILWCNKLAQLILGFVWPQDNGQRIDNL 146

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
           +     S        + + + ++ L         + +LL +RI+           L   D
Sbjct: 147 IRHPDFSAY------LKAGEYKEPL--ELASPVSDRRLLEIRIMSY---GDRQLLLIARD 195

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I+  +Q +                + +F+A VSHE++TPLT + G+ E++++       N
Sbjct: 196 ITRIRQLEG--------------MRKEFVANVSHELKTPLTVLQGYLEMMQSMAEPGSMN 241

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE-PVSLDEAVSEAISLVQLYA 679
            +       + +    +  +V  LL +S+IE   ++++ E  V++ + +       +  A
Sbjct: 242 AKP---LALMQQQTRRMQSMVEQLLVLSRIE-DAVDINLENTVNMAQLMEVLKEEAKALA 297

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
            +K   +       +     +   ++    N++SNAI +T  GG+I +     +   +  
Sbjct: 298 QDK-YELSFHCEAGLNS-HGNELQLRSACSNLISNAIRYTEPGGKITVQWRSVATGGL-F 354

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V DTG G+    + +  + F ++ +++  +  G+GLGL + K  +  +  +  I S   
Sbjct: 355 SVTDTGEGIAPQHINRLTERFYRVDSARSRQTGGSGLGLAIVKHALSHHHSELNISSELG 414

Query: 800 KGTLIEIIFP 809
           KG+    + P
Sbjct: 415 KGSTFSFVIP 424


>gi|239904838|ref|YP_002951576.1| two-component sensor histidine kinase [Desulfovibrio magneticus
           RS-1]
 gi|239794701|dbj|BAH73690.1| two-component sensor histidine kinase [Desulfovibrio magneticus
           RS-1]
          Length = 478

 Score =  278 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 94/475 (19%), Positives = 177/475 (37%), Gaps = 33/475 (6%)

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN---SLAMTFIP 417
                L  L+  P  +       + + R  R      +RL T    R     +  +   P
Sbjct: 20  PQRLRLDRLVPGPARTLPLRRLTLDVLRDGRESFMTPSRLRTPLPRRSPEPMAADVLPHP 79

Query: 418 FEKANQFPENMPQNGIEPE----DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
               +       + G   E      + +   ++ E+   ++ +IL+  +D + ++ ++  
Sbjct: 80  PSLEDLIGIEHSKLGFYQELRQKVEELQDAHQESELRRQEIAAILDGITDVMMVLTKDLR 139

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
           I+S N    +LF  P  +   +        +               +             
Sbjct: 140 IISVNHVFHELFDVPRPE--GQHCYKLFRASASPCPECPAHRSFRSNAVCRCMGTFKIHG 197

Query: 534 KEEKLLSLRIII-KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
              +   +   I       S   +   D++   + + K   A+K+A           A V
Sbjct: 198 VSRRFEMVASPIHNPDSPESRILIFKRDVTLENEYQAKYYQAEKMATIGM-----LAAGV 252

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFG---PLGNP---RYIEYANYIDRSGNLVLDIVNDLLD 646
           +HEI  PLTA+ G +E I+ +       + +       EY   I        DIV  +L 
Sbjct: 253 AHEINNPLTAVYGLAEGIRRRLPAIRQAVDDDLYGDVAEYTETILMECRRCRDIVRSMLS 312

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK---RILIRTSFANNIPRILADLRS 703
            S+       L F PV L+E V++ +++++    ++    + +  +    +P +  D   
Sbjct: 313 FSRP----HTLAFSPVCLNEVVTDTLNILKSRLEDRAAAGLRLTVNLHQGLPTVPGDEAQ 368

Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
           +KQ+ LNIL N++      G+I I+T   ++  V L V DTG G+    ++K   PF   
Sbjct: 369 LKQVLLNILVNSMDAIEGEGEITITTHPENDNTVNLSVEDTGRGIPPDNMDKLFNPFFTT 428

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
                  G+G G+GL    ++V  + G   + S    GT   +  PL D+ HP +
Sbjct: 429 KP----VGQGLGIGLSTCYSIVREHHGVIEVASEVGIGTHFTVKLPL-DSGHPSE 478


>gi|254254262|ref|ZP_04947579.1| Signal transduction histidine kinase [Burkholderia dolosa AUO158]
 gi|124898907|gb|EAY70750.1| Signal transduction histidine kinase [Burkholderia dolosa AUO158]
          Length = 1104

 Score =  278 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 115/616 (18%), Positives = 200/616 (32%), Gaps = 50/616 (8%)

Query: 228 QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287
             P   +R    VS                  P L + +    +   F   N +    + 
Sbjct: 144 ADPVFDIRRGVTVSGFVYSSDRTILAAAPVTAPFL-TPDDLEQDARTFIHANADPIEDRL 202

Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFD------EGENLTPETVDKCPIPFFVY----- 336
              +     K    +++  +     A  +       G       V + P   F++     
Sbjct: 203 QSQSEAQLRKSRPLWIALEDPVRQRALAEIVVPIFHGRERVATIVGRVPRDQFLHYFLDA 262

Query: 337 --SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394
               G    A   FL L    +                 +     A+        D    
Sbjct: 263 SRPEGFFVLAGKHFLPLGAGPTSA----RDAALLAAVQAQAPRLQAVATGTTLLRDGLTF 318

Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV-------DTRINK--- 444
             + R+    W    +   T +      +    +         +       D R+ +   
Sbjct: 319 IVAQRIAGPDWLAVYAFDWTDVVGGMRGEIAAAVLLCIGALALLWTGVGYFDRRVAQPFE 378

Query: 445 ---RKMEIEVMQLCSILEATSDGIAIINREGI-ILSTNRAVSKLFGYPVEDILRKPFTVF 500
              +K+        SI++    GIA+ + E   ++  N     LFG     +        
Sbjct: 379 RDAKKLVEAEEFNRSIIDTAPVGIAVFDPERRSVILENAVARHLFGDAGPHVE------- 431

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK-LLSLRIIIKKLPFSSCYSLTMH 559
             +         +                   T   +  +       +          + 
Sbjct: 432 FYEAVARAREQSMAVSSDRANTGHSFFEIPWKTASGEMYIGAASSATRFGGRDALLFGLV 491

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           DI+E K  +  L  A++ A++ +  KS FLA +SHEIRTPL    G  E++ N       
Sbjct: 492 DITERKTTEAMLIDARRAADRANREKSIFLAIMSHEIRTPLHGATGHLELLSNTSL---- 547

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
           +    E    I RS + +L ++NDLLD ++IE+  + ++  P+ ++              
Sbjct: 548 DAGQRERVGLIRRSFDSLLSLINDLLDTTRIEANALTVNALPIYVNRIAEYCAQHFAPTI 607

Query: 680 NEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIST----THTSN 734
               + +       + R+L  D + + QI  N++SNA  FT  G  I +ST     H   
Sbjct: 608 LAHNVALHCYTDPALDRLLEGDDQRLMQILQNLVSNAAKFTQHG-TISVSTTLLDRHDDR 666

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
             V + V DTG+G+ +       KP  Q   S   R  GTGLGL L + + +   G+  +
Sbjct: 667 LWVRIEVADTGIGIPSALQAMVFKPLVQADASISRRFGGTGLGLFLCRNLAELMGGRITL 726

Query: 795 FSTPAKGTLIEIIFPL 810
            S P  G+   I  PL
Sbjct: 727 QSEPNVGSTFGIEVPL 742


>gi|70731280|ref|YP_261021.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68345579|gb|AAY93185.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens
           Pf-5]
          Length = 1082

 Score =  278 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 101/580 (17%), Positives = 206/580 (35%), Gaps = 53/580 (9%)

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
               D+       L  + +  +        +       + +   L +       Y+S  +
Sbjct: 187 PDNFDLAVPSVGRLRGTGQLPMQTGHLVDVMTQVNKRLRGHNSPLPDLQVRWEPYVSSED 246

Query: 308 H---PSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364
               P+L AY       T  TV+       + S  NL   N     L ++   DD  +  
Sbjct: 247 DKSAPTLLAYVSINLAKTALTVEGADTWVVLGSLMNLSQVNN-IERLMQWSIYDDFTLIT 305

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYR--------SDRTCIAASARLHTIQWNRENSLA---M 413
               +L           + V   R        S       +  + +++   + +L     
Sbjct: 306 PRGVVLTGALKPGQVLDEGVNFNRDGLVFKLSSPGEQHWTAIYVISLRSFLDYALWPLLC 365

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR-EG 472
                         + +       +  +     +        ++++    G+ +I R + 
Sbjct: 366 LVALALALLGCSRAVNRWYQARVILPAQRAHASIAESEAFSRTVIDTAPTGLCVIRRSDH 425

Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
            +L  N+   +           +     L   T                           
Sbjct: 426 HVLLENQRAQQ------WHDNGQ-LMSLLTPLTGPGHADL-------------------- 458

Query: 533 TKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
               + L +  +  +      +   +HD++   ++   L  A++ A+  +  KS FLA +
Sbjct: 459 EINGRHLHVAFVPTRYQGQDAWLCALHDVTRHVEDAAALEEARQAADSANQAKSRFLATM 518

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHEIRTPL  ++G  E++      P    R  +Y + I RS   +  +++D+LD+SKIE+
Sbjct: 519 SHEIRTPLYGVLGTLELLGLTSLAP----RQQDYLHTIQRSSATLFQLISDVLDVSKIEA 574

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNI 711
           G+M L  +     +   + +     +A  K +L+       +P  +  D   ++QI  N+
Sbjct: 575 GQMTLELQDFCPLQLTEDTVRTYSAFARSKGLLLYACIDPALPDRLRGDPIRIRQILNNL 634

Query: 712 LSNAIHFTPSGGQI-IISTTHTSNEEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
           LSNAI FT +G  +  +    + +    +  +V D+G G++  + ++   PF Q+ ++  
Sbjct: 635 LSNAIKFTDNGRVVLRVQLLESDDGRAHVQWQVSDSGGGISLAQQQQLFDPFYQVNDAT- 693

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
               G GLGL + K + +   G+  + S P  G+   +  
Sbjct: 694 -EQAGAGLGLAICKWLCELMAGQLNLVSEPGLGSSFTLQL 732


>gi|294055873|ref|YP_003549531.1| histidine kinase [Coraliomargarita akajimensis DSM 45221]
 gi|293615206|gb|ADE55361.1| histidine kinase [Coraliomargarita akajimensis DSM 45221]
          Length = 586

 Score =  278 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 73/268 (27%), Positives = 130/268 (48%), Gaps = 15/268 (5%)

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
                 D+   +   +KL++++  A +    K  FLA +SHEIRTP+  ++G  +++ + 
Sbjct: 156 VIKVQRDL---ELTNDKLAYSRDKALEGVRMKDIFLANMSHEIRTPMNGVLGMIDLLYDT 212

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
                 +    +       S   ++ I+ND+LD SKIE+GK+++   P +L E V  + +
Sbjct: 213 EM----DAEQEQLVGTARSSAETLMRIINDILDFSKIEAGKVSVELMPFNLIEIVESSAA 268

Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
           L    A EK I +  +F +    ++ D    +Q+  N++SNA+ FT SG ++ I      
Sbjct: 269 LYSEAATEKEIDLAVAFDDVPAWVVGDPHRYQQVLNNLISNAVKFTDSG-EVEIRACQVE 327

Query: 734 NEE---VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
                 ++  V+DTG+G+   ++ K  +PF Q   S   R  GTGLGL + + + +   G
Sbjct: 328 TGSGLGILTEVKDTGIGIPASKVTKLFEPFTQAEESHARRFGGTGLGLSICRNLCELLGG 387

Query: 791 KFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
           +    S    GT+   + P      PH+
Sbjct: 388 EIECDSQLDDGTVFSFVLPFA----PHN 411


>gi|160900344|ref|YP_001565926.1| PAS/PAC sensor signal transduction histidine kinase [Delftia
           acidovorans SPH-1]
 gi|160365928|gb|ABX37541.1| PAS/PAC sensor signal transduction histidine kinase [Delftia
           acidovorans SPH-1]
          Length = 464

 Score =  278 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 80/424 (18%), Positives = 171/424 (40%), Gaps = 49/424 (11%)

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL---EA 460
            WN    L+       +       +            R + ++++    +L  IL   +A
Sbjct: 49  SWNAMRLLSWLRQSELREAPELSGIWGEASVRMRRWLRQSVQQVQQGDQRLNDILSALQA 108

Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM---NHYLTEIL 517
           + +G+ +++ +G I   N+  ++ FG+  E  L +     +     S       +  +++
Sbjct: 109 SPNGVVLLDADGRIEWCNQIAARQFGFDAERDLLQSIGNLVRDPEFSAYFATQDFSRDLV 168

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY-SLTMHDISEWKQEKNKLSHAKK 576
                 T  +             +++ ++   +      L   D++  +Q +        
Sbjct: 169 MQGRESTASR------------PVKLSVQLYGYGEGRKLLLARDVTAVEQAE-------- 208

Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
                 + + DF+A VSHEIRTPLT ++GF E ++N    PL       Y   + +    
Sbjct: 209 ------AMRRDFVANVSHEIRTPLTVLVGFVETLQN---LPLEPEERNRYLGLMAQQAER 259

Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI-- 694
           +  +V DLL +S++E   +    E V + + +    +  +  ++   +  + S  + +  
Sbjct: 260 MQHLVEDLLALSRLEGSPLPSSNEWVPVAQLMQRCENEARGLSSM--LTRKQSLPHALSF 317

Query: 695 ---------PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
                      +      ++    N+L+NA+ +TP+GG+I ++     +      V+D+G
Sbjct: 318 PSAEMLAQAGEVAGASAELQSAFSNLLANAMRYTPAGGRIEVTWESLPDGSARFAVQDSG 377

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
            G+    L +  + F ++  S+     GTGLGL + K ++  +  K  I S P +G+   
Sbjct: 378 PGIEPKHLARLTERFYRVDRSRSRDTGGTGLGLAIVKHVLQRHGAKLGITSAPGQGSEFS 437

Query: 806 IIFP 809
           + FP
Sbjct: 438 VTFP 441



 Score = 48.1 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 33/369 (8%), Positives = 77/369 (20%), Gaps = 26/369 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +DA G ++  ++   +  G  A + +   +       ++  +         Q+       
Sbjct: 116 LDADGRIEWCNQIAARQFGFDAERDLLQSI------GNLVRDPEFSAYFATQDFSRDLVM 169

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                 +    P+ L+              R   +           A+ +      SH  
Sbjct: 170 Q--GRESTASRPVKLSVQLYGYGEG-----RKLLLARDVTAVEQAEAMRRDFVANVSHEI 222

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
                      E       +        +N+   L    A +   L  +   L   E S 
Sbjct: 223 RTPLTVLVGFVETLQNLPLEP-----EERNRYLGLMAQQAERMQHLVEDLLALSRLEGSP 277

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
           LP   ++  +       +     L +            + PS       GE        +
Sbjct: 278 LPSSNEWVPVAQLMQRCENEARGLSSMLTRKQSLPHALSFPSAEMLAQAGEVAGASAELQ 337

Query: 329 CPIPFFVYSHGNLFYANPSFLLLT-----KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
                 + +      A     +               +   G+     A        +  
Sbjct: 338 SAFSNLLANAMRYTPAGGRIEVTWESLPDGSARFAVQDSGPGIEPKHLARLTERFYRVDR 397

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
                +  T +  +   H +Q +      +                              
Sbjct: 398 SRSRDTGGTGLGLAIVKHVLQRHGAK---LGITSAPGQGSEFSVTFPASRVRIAAPGTRE 454

Query: 444 KRKMEIEVM 452
             +      
Sbjct: 455 VGEARESRA 463



 Score = 37.7 bits (86), Expect = 7.4,   Method: Composition-based stats.
 Identities = 9/159 (5%), Positives = 34/159 (21%), Gaps = 3/159 (1%)

Query: 277 TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY 336
            +  ++  +      +   +         ++   +        ++             + 
Sbjct: 58  WLRQSELREAPELSGIWGEASVRMRRWLRQSVQQVQQGDQRLNDILSALQASPNGVVLLD 117

Query: 337 SHGNLFYANPSFLLLTKYKSVDDIEIAGG---LSTLLDAPKLSDNNAIKPVMLYRSDRTC 393
           + G + + N        + +  D+  + G         A   + + +   VM  R     
Sbjct: 118 ADGRIEWCNQIAARQFGFDAERDLLQSIGNLVRDPEFSAYFATQDFSRDLVMQGRESTAS 177

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
                 +    +     L +                   
Sbjct: 178 RPVKLSVQLYGYGEGRKLLLARDVTAVEQAEAMRRDFVA 216


>gi|241764052|ref|ZP_04762091.1| PAS/PAC sensor hybrid histidine kinase [Acidovorax delafieldii 2AN]
 gi|241366657|gb|EER61129.1| PAS/PAC sensor hybrid histidine kinase [Acidovorax delafieldii 2AN]
          Length = 742

 Score =  278 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 101/587 (17%), Positives = 188/587 (32%), Gaps = 50/587 (8%)

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH--PSLSAYFDEG 318
           L  +     P +       L          +L    +     L  +N          +  
Sbjct: 9   LDPAGRQGAPAEPALGPSALPAGVHGTAADSLVAELRAYQAELESQNKVLRYSQTVAESA 68

Query: 319 ENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVD-----DIEIAGGLSTL--- 369
                      P+   V      +  AN       +    D      +        L   
Sbjct: 69  SERFETLFASVPLALMVVDEHDMVVQANSMAHRSFQPTERDRPLTALMPFVHPQDALRVR 128

Query: 370 --LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
                 K    +  K V+        I     +  I+  + +   +        +Q P  
Sbjct: 129 EAFAQAKDQGRSEAKEVVFAIGADCRITGDLHIAHIEAPQSSGPPLPQFLCAVIDQGPLL 188

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
             +  ++   V  ++   ++     +L +++ +  D I  +++   I   N   + LF  
Sbjct: 189 AERQALQHSAVTLQLRNEQIRASEKRLEAVINSALDAIICVDQHQRITVFNPTAAALFQC 248

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
              D L      FL     ++    L     L             T   K L++ + +  
Sbjct: 249 SASDALGSTLDRFLPDAAQALAFAQLATQAMLG-------EMTALTASGKELAVEVSVSF 301

Query: 548 LPFSSCYSLTM--HDISEWKQEKNKLSHAKKIAEKE--SSHKSDFLARVSHEIRTPLTAI 603
                  + T+   D++  K+ +   +  +    +             ++H+    L AI
Sbjct: 302 ERHVDGETTTVFARDLTGRKKAEAHRNELEAQLRESHKMQAVGTMAGGIAHDFNNILGAI 361

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +G  E +      P      +E    ID++G    D+V  +L  S+ E          VS
Sbjct: 362 LGNVE-LAKADCAPGSP--VLESLLEIDKAGRRARDLVRQILTFSRNE----PPQRSAVS 414

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF-TPSG 722
           L E   +   L+++      + +       +P +LAD   V+Q  LN+ +NA+H      
Sbjct: 415 LAEVAHDTERLLRVTLPPA-VELHMQLQAGLPPVLADATQVEQALLNLCTNAVHAIGAER 473

Query: 723 GQIII-------------STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
           G I +                    + V L VRDTG GM    LE+  +PF         
Sbjct: 474 GSIHVEAATVQPDQRLSERLGLAPVDYVALTVRDTGPGMDAATLERIFEPFFTTKP---- 529

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
            G+GTGLGL +   ++  + G   + STP  G+   + FP+  ++ P
Sbjct: 530 VGQGTGLGLAVVHGVMRTHEGAVDVQSTPGHGSRFTLYFPVATSAAP 576



 Score = 46.2 bits (108), Expect = 0.021,   Method: Composition-based stats.
 Identities = 27/279 (9%), Positives = 63/279 (22%), Gaps = 13/279 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D H  +   +          A   +G  L    D    D    +           G+ T
Sbjct: 229 VDQHQRITVFNPTAAALFQCSASDALGSTL----DRFLPDAAQALAFAQLATQAMLGEMT 284

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                G  L V + ++        R   G                 A    L+ +    H
Sbjct: 285 ALTASGKELAVEVSVSF------ERHVDGETTTVFARDLTGRKKAEAHRNELEAQLRESH 338

Query: 209 EIKKGHSSVEKEKYD---IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
           +++   +      +D   I         L   +         +  +      +   L  +
Sbjct: 339 KMQAVGTMAGGIAHDFNNILGAILGNVELAKADCAPGSPVLESLLEIDKAGRRARDLVRQ 398

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
             +    E      ++          L   +      L  +    L     +   +    
Sbjct: 399 ILTFSRNEPPQRSAVSLAEVAHDTERLLRVTLPPAVELHMQLQAGLPPVLADATQVEQAL 458

Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364
           ++ C                 +  +    +  + + +A 
Sbjct: 459 LNLCTNAVHAIGAERGSIHVEAATVQPDQRLSERLGLAP 497


>gi|172035572|ref|YP_001802073.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
           51142]
 gi|171697026|gb|ACB50007.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
           51142]
          Length = 908

 Score =  278 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 77/262 (29%), Positives = 134/262 (51%), Gaps = 15/262 (5%)

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
             D+ + +++  +   ++K  E+ S  KS+FLA + HEIRTPL A+ G + ++ +     
Sbjct: 238 FQDLQDLQRKMAQQQASEKALEELSRAKSEFLAMIGHEIRTPLNAVTGMTGLLLDTEL-- 295

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
             N +  E+ + I  SG  +L ++N++LD SKIE+ K+ L  E   L   + + + L   
Sbjct: 296 --NDQQQEFVSIIRNSGENLLTMINNILDFSKIEAQKLELEEEAFELGPCIEDILRLFVS 353

Query: 678 YANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII-I------ST 729
            A++K + +     +N P  I+ D   +KQI  N++ NA+ FT +G  +I +      ST
Sbjct: 354 QASKKNLELAYLVESNTPSAIVGDSTRLKQILANLIGNAVKFTDNGEVVIYVNGTPIKST 413

Query: 730 THTSNE---EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
            +       E+   V+DTG+G+      +  +PF Q+  S   R  GTGLGL ++K + +
Sbjct: 414 ENEQENPTYELRFAVKDTGIGIPPDRCHRLFQPFSQVDASTTRRYGGTGLGLAISKRLSE 473

Query: 787 ANMGKFYIFSTPAKGTLIEIIF 808
              G  ++ ST  KG+      
Sbjct: 474 LMGGGMWVHSTEGKGSTFNFTI 495


>gi|158337935|ref|YP_001519111.1| two-component hybrid sensor and regulator [Acaryochloris marina
           MBIC11017]
 gi|158308176|gb|ABW29793.1| two-component hybrid sensor and regulator [Acaryochloris marina
           MBIC11017]
          Length = 684

 Score =  278 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 78/276 (28%), Positives = 142/276 (51%), Gaps = 11/276 (3%)

Query: 545 IKKLPFSSCYSLTMHDISEWKQEKN--KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
           +  L  +       +++ E + E+   +L  AK  A++ +  KS+FLA +SHE+RTPL  
Sbjct: 168 LIALRQAEQELTQFNEVLEKRVEERTFELQAAKLEADRANQAKSEFLANMSHELRTPLNG 227

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           I+G+++++   +     +         I  SG+ +L ++ND+LD++KIE+GK+ L     
Sbjct: 228 ILGYAQILSRSKTLSAED---KNGVGVILDSGSHLLSLINDVLDLAKIEAGKLELFPTTT 284

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
           SL   +   + + Q+ A +K +      +     ILAD + + Q+ +N++ NAI FT +G
Sbjct: 285 SLPSLLQRVVDICQIKATQKGLQFLYKPSQLPEGILADEKLLSQVLINLIGNAIKFTDAG 344

Query: 723 G---QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
               QI +         ++ +V DTG G+   +++K  + F Q+      + EGTGLGL 
Sbjct: 345 TVTFQIEVHKGSDGQVSLMFKVIDTGRGIAEEDIDKLFEAFEQV-GDHHKQSEGTGLGLA 403

Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIF--PLYDT 813
           +++ +V    G  +I S P  G+    I   PL ++
Sbjct: 404 ISQRIVQLMGGTIHINSKPGDGSEFWFILDFPLVES 439


>gi|115376518|ref|ZP_01463751.1| two-component hybrid sensor and regulator, putative [Stigmatella
           aurantiaca DW4/3-1]
 gi|115366451|gb|EAU65453.1| two-component hybrid sensor and regulator, putative [Stigmatella
           aurantiaca DW4/3-1]
          Length = 1090

 Score =  278 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 107/553 (19%), Positives = 197/553 (35%), Gaps = 43/553 (7%)

Query: 283 YTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLF 342
             ++     L+   +              SA          + V         Y  G   
Sbjct: 102 QLRRDKERLLRQLHQRVEALFVLYEVSRASASDPPSYEAIIDRVLSAVARVLPYDCGAAL 161

Query: 343 YA----NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398
            A      + L L    +V +  + G   ++L A + S    +    L       I+  A
Sbjct: 162 IAPDDSRSAILRLRCLGTVGEKALLGVKESMLGAYRRSSGQLLPEDRLTTRVTGTISQDA 221

Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI- 457
               +  ++     +                Q   E + V       +    +  L ++ 
Sbjct: 222 SAPAVYPSQLTVSLVAGGRPVGMLSLFSQRLQAFTEDDGVLLDTLANQTADAIQSLRAVE 281

Query: 458 ----------LEATSDGIAIINREGIILSTNRAVSKLFGYPVE--DILRKPFTVFLEQNT 505
                     +EA +DG+ + + +  I+  N A  +L     E   +  +     L    
Sbjct: 282 EEARRRIERMVEAMADGVLLTDEQNAIVVINPAARRLLRVTEEVSALTGQMLEERLGFQP 341

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
             ++  +     S       E        +  +  +      L       + + D++E K
Sbjct: 342 SELIRGW---EYSGSQMLQEEVELFDRHIQCTVTPVNDARGTLK---GVCVVLRDVTEQK 395

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
             + +              K +F++ VSHE+RTPLT+I G  +++ N   G + N +   
Sbjct: 396 MLEER--------------KDEFVSMVSHELRTPLTSISGALDLVLNFLAGDI-NEKQQR 440

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           Y      S   +  +V+DLLD++K   G++ ++FE   LDE V  A         E+R+ 
Sbjct: 441 YLFMARESTEKLNSLVDDLLDLAKFAKGRLRMNFELTYLDELVRRAAEKYGPAFQERRVK 500

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN--EEVILRVRD 743
           +  +   +  R+LAD   V Q+  N+L+NA+ FTP GG++ +    TS     V L   +
Sbjct: 501 VLMTLPQHGLRVLADPSRVNQVLNNLLTNAVKFTPEGGEVRLELKATSALPGHVALSCWN 560

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF-STPAKGT 802
           +G  +    LE+    F Q          GTGLGL + + +V+A+ G  +   ST     
Sbjct: 561 SGEPIAEESLERIFDRFEQARTPSNRTVRGTGLGLAICRHIVEAHGGHIWCEPSTEGV-- 618

Query: 803 LIEIIFPLYDTSH 815
               + P+   + 
Sbjct: 619 RFVTVMPVEPPAE 631


>gi|146301979|ref|YP_001196570.1| GAF sensor hybrid histidine kinase [Flavobacterium johnsoniae
           UW101]
 gi|146156397|gb|ABQ07251.1| GAF sensor hybrid histidine kinase [Flavobacterium johnsoniae
           UW101]
          Length = 653

 Score =  278 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 74/243 (30%), Positives = 120/243 (49%), Gaps = 11/243 (4%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L   KKIAE     K  FLA +SHEIRTPL AIIGF+E++         + +   +   
Sbjct: 162 ELLRQKKIAESAVLAKESFLANMSHEIRTPLNAIIGFTELLSGTPL----DKQQQAFIQD 217

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           +  +G  +L IVND+LD+SKIESG ++L  +P +L +++     L+++   +  +     
Sbjct: 218 VQTAGENLLLIVNDILDLSKIESGGLSLEKQPFNLKKSLRHVYDLLKVKTAD-GVEFNLF 276

Query: 690 FANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIST----THTSNEEVILRVRDT 744
               +P ++  D   + QI +N+  NA+ FT  G ++ IS         +  +   V+DT
Sbjct: 277 LDAELPDVITGDQGRLNQIMVNLAGNALKFTNEG-EVTISVKNKGETEDSYTIRFSVKDT 335

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G+    LE   + F Q       +  GTGLGL + K +V  +  K  + S    G+  
Sbjct: 336 GIGIPKEHLESIFERFTQGQEDTTRKFGGTGLGLSIVKELVKLHDSKIQVKSREGAGSEF 395

Query: 805 EII 807
              
Sbjct: 396 FFT 398


>gi|307634952|gb|ADI84766.2| sensor histidine kinase response regulator, HAMP and Hpt
           domain-containing [Geobacter sulfurreducens KN400]
          Length = 810

 Score =  278 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 80/249 (32%), Positives = 124/249 (49%), Gaps = 9/249 (3%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E ++    LS AK+ A+  S  KS FLA VSHEIRTP+  ++G   ++           +
Sbjct: 281 ELERAVADLSKAKEAADSASQSKSRFLANVSHEIRTPMNGVLGMVSLLLETDL----QAK 336

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             EYA  I  SG L++ ++NDLLD S+IESGK+ +   P +    + E  ++    A +K
Sbjct: 337 QREYAEIIRSSGELLMQVINDLLDFSRIESGKLKMEQLPFAARRVIEEMATIYGERARQK 396

Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI--- 738
            + +  S A  +P  +L D   ++Q+  N+L NA+ FT  G  I ++   +    V    
Sbjct: 397 GVFLEYSMAGEVPDRLLGDRHRLRQVLGNLLDNAVKFTLKG-TITLTVRGSVEGGVCRLS 455

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
             V DTG+G+    L +   PF Q  +S   R  GTGLGL + + +V+   G     S P
Sbjct: 456 CIVSDTGIGIPQDMLPRLFHPFTQADDSNTRRFGGTGLGLAIVRHLVELMGGTVSCDSEP 515

Query: 799 AKGTLIEII 807
             G++    
Sbjct: 516 GCGSVFRFT 524


>gi|170726314|ref|YP_001760340.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
 gi|169811661|gb|ACA86245.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
          Length = 1713

 Score =  278 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 126/762 (16%), Positives = 264/762 (34%), Gaps = 56/762 (7%)

Query: 92   HGYLKEISEELPKTIGNYAFKMIGMRLCDVSD-ILHIDPNNHIGDLLKRQNTWY----GK 146
             G +  ++    +     A  +IG  +  +     H + + ++       N        +
Sbjct: 526  DGTILSVNSATEEMFKYSAESLIGQNIKFLMPEPYHSEHSTYLSQYKATGNKKIIGKGRE 585

Query: 147  TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                  +GT    PI L+   +  +  E + + GF  +              R +     
Sbjct: 586  VMALRSDGTTY--PIYLSVGEV--KQGEETLYTGF--IRDITQQKKFEQDIIRREALNRG 639

Query: 207  LHEI-KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS-----SLTEYYAHKDDVLKTEKYP 260
            + +       S+  +   I    +     + K++       ++       D+  +  K  
Sbjct: 640  MVDTCLDAILSITTDGVIIACNNAAELLFQYKSEELIGKKVNILMPSPFTDEHDEYLKNY 699

Query: 261  LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
            L T  +  + +  +   +  +  T   +    +   +E   +       +    ++    
Sbjct: 700  LTTGIKKIMGKGREVTGLKKDGTTFPIFLTIGEVEQEEGTIFTGFVRDITKEKQYEADLQ 759

Query: 321  LTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSV------DDIEIAGGLSTLLDAPK 374
             T E  D             +         L              ++   G+    D   
Sbjct: 760  RTNE--DLMKQNELKSQVSRINELTQGASDLMAMADEIISALSQMMKAGHGVIYTYDQED 817

Query: 375  LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
               + +       R       +       Q  +E    +         Q    + Q+   
Sbjct: 818  DGLSLSGSYAFKKRKAVLPSISIGEGLVGQCAKERKAILLSQVPADYIQINSGLGQSSPL 877

Query: 435  PEDVDTRINKRKM--EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
               V   + +  +   IE+       +   + I +I+    I+  N    +         
Sbjct: 878  NVLVVPVLFEEALIGVIELASFEGFTDEQVEVIELISSNLGIVINNLRSQE--------- 928

Query: 493  LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR--IIIKKLPF 550
              +  T+ LE    S       E L       LE+  L  T EE+L      + +     
Sbjct: 929  --RTQTLLLETQRQSEELQAQQEELKSSNESLLEQTQLLKTSEEELKQQSEELKVSNEEL 986

Query: 551  SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
                       SE +  K  L+   +     S +KS+FLA +SHE+RTPL +++  ++ +
Sbjct: 987  EEKQVFLKRQKSEIEAAKTDLTIKAEELALASKYKSEFLANMSHELRTPLNSLLLLAKGL 1046

Query: 611  KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
             + +   L +   +E A  I   GN +L ++ND++D+SK+E+GK+++H E VS+      
Sbjct: 1047 ADNKSQHL-DETEVEDAKIIFDGGNNLLCLINDIMDLSKVEAGKLSIHIEEVSIAVLCRN 1105

Query: 671  AISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
               +    A ++ +++     + +P  + +D   V+QI  N+LSNA+ FT +G  + +  
Sbjct: 1106 LRQVFDPIAKDRELVLNIEVDDKLPSTVRSDGHRVEQILRNLLSNALKFTETGS-VTLKI 1164

Query: 730  TH------------TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
             +             +   +   V DTG+G+   +++   + F Q   S   +  GTGLG
Sbjct: 1165 GYVAPNTLFSHSSLDAETALSFSVVDTGIGIPENKIQAIFEAFQQQDGSTSRKYGGTGLG 1224

Query: 778  LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP-LYDTSHPHD 818
            L +A+ +     G+  + S   +G+   +  P +YD+    +
Sbjct: 1225 LTIARELTRLLGGEIQLQSVLDEGSTFTLYLPNVYDSDAVEE 1266



 Score =  124 bits (311), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 42/280 (15%), Positives = 97/280 (34%), Gaps = 10/280 (3%)

Query: 313 AYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
           A      NL    VD        +   G +   N +   + KY +   I     +  L+ 
Sbjct: 500 ASLSLSLNLNRGIVDTAVDGIISIKDDGTILSVNSATEEMFKYSAESLIGQN--IKFLMP 557

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
            P  S+++          ++  I     +  ++ +                +  E     
Sbjct: 558 EPYHSEHSTYLSQYKATGNKKIIGKGREVMALRSDGTTY---PIYLSVGEVKQGEETLYT 614

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
           G   +    +  ++ +         +++   D I  I  +G+I++ N A   LF Y  E+
Sbjct: 615 GFIRDITQQKKFEQDIIRREALNRGMVDTCLDAILSITTDGVIIACNNAAELLFQYKSEE 674

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL--EKITLGSTKEEKLLSLRIIIKKLP 549
           ++ K   + +        + YL   L+  +++ +   +   G  K+     + + I ++ 
Sbjct: 675 LIGKKVNILMPSPFTDEHDEYLKNYLTTGIKKIMGKGREVTGLKKDGTTFPIFLTIGEVE 734

Query: 550 FSSC--YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
                 ++  + DI++ KQ +  L    +   K++  KS 
Sbjct: 735 QEEGTIFTGFVRDITKEKQYEADLQRTNEDLMKQNELKSQ 774



 Score = 85.8 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 21/143 (14%), Positives = 59/143 (41%), Gaps = 4/143 (2%)

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
             +     + + +     I++   DGI  I  +G ILS N A  ++F Y  E ++ +   
Sbjct: 494 QIKERNASLSLSLNLNRGIVDTAVDGIISIKDDGTILSVNSATEEMFKYSAESLIGQNIK 553

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTL--EKITLGSTKEEKLLSLRIIIKKLPFSSC--Y 554
             + +   S  + YL++  +   ++ +   +  +    +     + + + ++       Y
Sbjct: 554 FLMPEPYHSEHSTYLSQYKATGNKKIIGKGREVMALRSDGTTYPIYLSVGEVKQGEETLY 613

Query: 555 SLTMHDISEWKQEKNKLSHAKKI 577
           +  + DI++ K+ +  +   + +
Sbjct: 614 TGFIRDITQQKKFEQDIIRREAL 636


>gi|218781351|ref|YP_002432669.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218762735|gb|ACL05201.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 1011

 Score =  278 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 87/526 (16%), Positives = 183/526 (34%), Gaps = 48/526 (9%)

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGG 365
                   F + E      ++       + +  G + Y +PS   +     VD +     
Sbjct: 375 QVQQAKETFADREKWFRALIENATDIVTILNANGIITYQSPSVERILGLDPVDMVGR--- 431

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
             ++LD     D +  + ++L   +R  +        ++        +  +        P
Sbjct: 432 --SILDWFHPQDADKFEELLLSMIERPGMP-KVTEFRLRHRDGTWRILELLGN-NLLADP 487

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
                     E  + R  ++ +E E  +L   L +  DG+   + +G+I   N    +L 
Sbjct: 488 LIDGVILNIREVTERRQAEKALEEEKERLAVTLRSIGDGVIATDGKGLIRLFNEEAQRLT 547

Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLT---EILSLDLRQTLEKITLGSTKEEKLLSLR 542
           G+ V D L +P    L  +  +  +  L     +L+    +      + S  +     + 
Sbjct: 548 GWSVSDALGRPARDVLHIHHVNREDDRLDLAGAVLTSGRVEPRGDAMVVSM-DGVSTPIS 606

Query: 543 IIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
                +           L + D+++ ++ + +L    K+              ++H+   
Sbjct: 607 SSASPITDEIGRAIGAILILRDVTQRRKYETELQKMDKL-----ESIGVLAGGIAHDFNN 661

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
            LT ++G    I   +    GN + +      +R+     ++   LL  ++  +      
Sbjct: 662 ILTGVLGS---ISLAKLYGQGNEKVVSKLQEAERACLTARELTQQLLTFARGGA----PV 714

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718
            E  SL E + E +  V    +  ++    S   ++     D   ++Q+  N++ NA   
Sbjct: 715 KESASLAELLKECVGFV---LSGSKVRCEYSVPEDLMPAEVDASQIRQVIQNLVINATQA 771

Query: 719 TPSGGQIIISTT-----------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
            P GG + IS                 + V + +RD G G+   +L     P+       
Sbjct: 772 MPQGGILYISAQNVEVEEKDNLPLPPGQYVEMSIRDQGEGIPPEDLSNIFDPYFTT---- 827

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
             + EG+GLGL  A ++V  + G   + S   +GT   +  P  D+
Sbjct: 828 --KQEGSGLGLATAYSIVKKHDGHIGVESVLGEGTSFTVYLPASDS 871



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 33/293 (11%), Positives = 79/293 (26%), Gaps = 34/293 (11%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL--KRQNTWYGK 146
           ++A+G +   S  + + +G     M+G  + D       D    +   +  +       +
Sbjct: 404 LNANGIITYQSPSVERILGLDPVDMVGRSILDWFHPQDADKFEELLLSMIERPGMPKVTE 463

Query: 147 TTLWPIEGTNLYVPID---LAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             L   +GT   + +    L A P+             G++   R   + R   K L+++
Sbjct: 464 FRLRHRDGTWRILELLGNNLLADPLID-----------GVILNIREVTERRQAEKALEEE 512

Query: 204 FSHLHEIKK------------GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD 251
              L    +            G   +  E+    +  S    L    +      +   +D
Sbjct: 513 KERLAVTLRSIGDGVIATDGKGLIRLFNEEAQRLTGWSVSDALGRPARDVLHIHHVNRED 572

Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
           D L      L +             +++            + +    +   +      + 
Sbjct: 573 DRLDLAGAVLTSGRVEPRG-DAMVVSMDGVSTPISSSASPITDEIGRAIGAILILRDVTQ 631

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364
              ++       +          V + G     N     +    S+  +   G
Sbjct: 632 RRKYETELQKMDKL-----ESIGVLAGGIAHDFNNILTGVLGSISLAKLYGQG 679



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/254 (15%), Positives = 68/254 (26%), Gaps = 10/254 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI-----GDLLKRQNTW 143
            D  G ++  +EE  +  G      +G    DV  I H++  +         L   +   
Sbjct: 530 TDGKGLIRLFNEEAQRLTGWSVSDALGRPARDVLHIHHVNREDDRLDLAGAVLTSGRVEP 589

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
            G   +  ++G +   PI  +A PI        G     I+             +++DK 
Sbjct: 590 RGDAMVVSMDGVS--TPISSSASPITDEIGRAIGA--ILILRDVTQRRKYETELQKMDKL 645

Query: 204 FSHLHEIKKGHSSVEK-EKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
            S                   + S      + +   KV S  +         +     LL
Sbjct: 646 ESIGVLAGGIAHDFNNILTGVLGSISLAKLYGQGNEKVVSKLQEAERACLTARELTQQLL 705

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
           T      P +E      L +          +   + S            S      +NL 
Sbjct: 706 TFARGGAPVKESASLAELLKECVGFVLSGSKVRCEYSVPEDLMPAEVDASQIRQVIQNLV 765

Query: 323 PETVDKCPIPFFVY 336
                  P    +Y
Sbjct: 766 INATQAMPQGGILY 779


>gi|146343749|ref|YP_001208797.1| sensor histidine kinase [Bradyrhizobium sp. ORS278]
 gi|146196555|emb|CAL80582.1| Sensor histidine kinase with HAMP, PAS and Response regulator
            receiver domains [Bradyrhizobium sp. ORS278]
          Length = 1202

 Score =  278 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 88/650 (13%), Positives = 193/650 (29%), Gaps = 58/650 (8%)

Query: 190  DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEY 246
                R      ++ +S   E              I               +  V    ++
Sbjct: 437  TEAARDHFAARERLYSAAVESSNDAIVTLALDGTITGWNPAAQTMLGYSAEEVVGRQADF 496

Query: 247  YAHKDDVLKTEKY-PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
                D   + +     +   E     +      +            +++ + +       
Sbjct: 497  LVPPDRTTEAQDILQRVARGERIQAFETVRVRKDGQHILASLSVSPIKSPTGQIIGASKI 556

Query: 306  RNHPSLSAYFDEGENLT----PETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDI 360
                + S   ++             +       +   HG L   +PS   +  Y   + I
Sbjct: 557  ARDITESRRTEQALRQQTEERRRIFETSQDLILITDRHGILVQVSPSVETILGYSPAEMI 616

Query: 361  EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
              +G        P        +   L  S     + ++    I  +              
Sbjct: 617  GRSG---ADFIHPDDLPKAREE---LRASRNGLRSRTSDGRYIHKDGRVVTLSWTS---- 666

Query: 421  ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
             N          I  +  ++R+ +  +        +I+E   D    I+ +G IL+ N  
Sbjct: 667  -NWSEPVQRHFFIGRDMTESRLAQETLRESEQLARNIVETALDAFVQIDDKGAILNWNSQ 725

Query: 481  VSKLFGYPVEDILRKPFTVFLEQN-TPSVMNHYLTEILSLDLRQTLE----KITLGSTKE 535
              ++FG+   +IL K     +        +   L  I+       L     +  +   ++
Sbjct: 726  AERIFGWSRAEILGKDVFSVITVEGGGEELRAALGRIVMTGHASPLGVGRRREVMVRRRD 785

Query: 536  EKLLSLRIIIKKLPFSSCYS--LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
             +     + +  L   + +       D+++    +      +    ++          ++
Sbjct: 786  GREFKAELSVTALKTRNGFVLNGFFRDLTDKIATEE-----RIRQSEKMEAIGQLTGGIA 840

Query: 594  HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
            H+    LT I G  E++          P+       ID +     D+   LL  ++    
Sbjct: 841  HDFNNILTVITGTIEILA---AAVAKEPQLAAITRMIDEAAARGADLTQHLLAFAR---- 893

Query: 654  KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713
            +  L    + ++  + +   L++     +++ I + F +       D   +    +N+  
Sbjct: 894  RQPLQPREIDVNTLIIDTAKLLRPTL-GEQVEIESVFQDETCVAHVDPNQLTTAVINLAL 952

Query: 714  NAIHFTPSGGQIIISTTH--------------TSNEEVILRVRDTGVGMTNYELEKAMKP 759
            NA    P+GG++I+ T                      ++ V D+G G+    ++K   P
Sbjct: 953  NARDAMPNGGKLILETGWADLDENYASLYDDVRPGRYAMIAVSDSGSGIPAGIIDKVFNP 1012

Query: 760  FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            F          G+GTGLGL +    V  + G   I+S    GT I +  P
Sbjct: 1013 FFTSKGP----GKGTGLGLSMVYGFVKQSAGHIRIYSEEGHGTTIRMYLP 1058



 Score =  132 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 59/505 (11%), Positives = 149/505 (29%), Gaps = 56/505 (11%)

Query: 106 IGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAA 165
           IG   F   G     +   L + P   +   L+       +  +    G  L+ P     
Sbjct: 221 IGTPVFAPDGKPFAILIIDLDMRP---VFANLRTAARPGAQLYVVNARGDYLFHPET--- 274

Query: 166 LPIYSRNREFSGFRGFGIVHVNRVDNDP----------RALGKRLDKKFSHLHEIKKGHS 215
                  REF+  RG      +R  +D               + L  +      +    +
Sbjct: 275 ------EREFASKRG----RPSRWQDDFPSLASATGSTEGFARILHDESDRPGGVAFAPA 324

Query: 216 SVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDF 275
            +  +++    +  P             T        +L       + +   + P  +  
Sbjct: 325 LLAGQEWVAVIETIPNTAFMAPALAIRKTAIEVGLIAMLCAAALAFVVARSLTRPINQLT 384

Query: 276 HTINLNQYTKK---------------QYFGTLQNNSKESFEYLSHRNHP-----SLSAYF 315
             +      +                + F  + +  +     L           +   +F
Sbjct: 385 QAVEGMGRGEPVKIPLEAVGETGVLARAFARVMDEVRSKTAELEREVQEHYLTEAARDHF 444

Query: 316 DEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
              E L    V+        +   G +   NP+   +  Y + + +            P 
Sbjct: 445 AARERLYSAAVESSNDAIVTLALDGTITGWNPAAQTMLGYSAEEVVGRQAD----FLVPP 500

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
                A   +          A       ++ + ++ LA +       +   + +  + I 
Sbjct: 501 DRTTEAQDILQRVARGERIQAFETV--RVRKDGQHILA-SLSVSPIKSPTGQIIGASKIA 557

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
            +  ++R  ++ +  +  +   I E + D I I +R GI++  + +V  + GY   +++ 
Sbjct: 558 RDITESRRTEQALRQQTEERRRIFETSQDLILITDRHGILVQVSPSVETILGYSPAEMIG 617

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554
           +    F+  +        L    +    +T +   +   K+ ++++L            +
Sbjct: 618 RSGADFIHPDDLPKAREELRASRNGLRSRTSDGRYI--HKDGRVVTLSWTSNWSEPVQRH 675

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAE 579
                D++E +  +  L  ++++A 
Sbjct: 676 FFIGRDMTESRLAQETLRESEQLAR 700



 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 32/372 (8%), Positives = 92/372 (24%), Gaps = 13/372 (3%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL-HIDPNNHIGDLLKRQNTWYGKTTLW 150
            G +   +      +G  A +++G +   +       +  + +  + + +     +T   
Sbjct: 468 DGTITGWNPAAQTMLGYSAEEVVGRQADFLVPPDRTTEAQDILQRVARGERIQAFETVRV 527

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
             +G   ++   L+  PI S   +  G     I              ++  ++   + E 
Sbjct: 528 RKDG--QHILASLSVSPIKSPTGQIIGASK--IARDITESRRTEQALRQQTEERRRIFET 583

Query: 211 KKGHSSVEKEKYDIFSQQSPPP---HLRMKNKVSSLTEYYAHKDD-VLKTEKYPLLTSEE 266
            +    +      +                  +      + H DD     E+     +  
Sbjct: 584 SQDLILITDRHGILVQVSPSVETILGYSPAEMIGRSGADFIHPDDLPKAREELRASRNGL 643

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
            S      +   +    T        +   +  F                E E L    V
Sbjct: 644 RSRTSDGRYIHKDGRVVTLSWTSNWSEPVQRHFFIGRDMTESRLAQETLRESEQLARNIV 703

Query: 327 DKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
           +        +   G +   N     +  +   + +         ++        A+  ++
Sbjct: 704 ETALDAFVQIDDKGAILNWNSQAERIFGWSRAEILGKDVFSVITVEGGGEELRAALGRIV 763

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
           +            R   ++                  +    +   G   +  D +I   
Sbjct: 764 MTGHASPLGVGRRREVMVRRRDGREFKAELSVTALKTRNGFVLN--GFFRDLTD-KIATE 820

Query: 446 KMEIEVMQLCSI 457
           +   +  ++ +I
Sbjct: 821 ERIRQSEKMEAI 832



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/330 (8%), Positives = 83/330 (25%), Gaps = 22/330 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ-NTWYGKT 147
            D HG L ++S  +   +G    +MIG    D      +          +    +     
Sbjct: 591 TDRHGILVQVSPSVETILGYSPAEMIGRSGADFIHPDDLPKAREELRASRNGLRSRTSDG 650

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                +G      + L+    +S   +    R F I          +   +  ++   ++
Sbjct: 651 RYIHKDGRV----VTLSWTSNWSEPVQ----RHFFIGRDMTESRLAQETLRESEQLARNI 702

Query: 208 HEIKKGHSSVEKE----------KYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT- 256
            E          +             IF         +    V ++          L   
Sbjct: 703 VETALDAFVQIDDKGAILNWNSQAERIFGWSRAEILGKDVFSVITVEGGGEELRAALGRI 762

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
                 +        +      +  ++  +     L+  +              ++    
Sbjct: 763 VMTGHASPLGVGRRREVMVRRRDGREFKAELSVTALKTRNGFVLNGFFRDLTDKIATEER 822

Query: 317 EGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
             ++   E + +         +  L     +  +L    + +       ++ ++D     
Sbjct: 823 IRQSEKMEAIGQLTGGIAHDFNNILTVITGTIEILAAAVAKE--PQLAAITRMIDEAAAR 880

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
             +  + ++ +   +        ++T+  +
Sbjct: 881 GADLTQHLLAFARRQPLQPREIDVNTLIID 910


>gi|253687404|ref|YP_003016594.1| PAS/PAC sensor signal transduction histidine kinase [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|251753982|gb|ACT12058.1| PAS/PAC sensor signal transduction histidine kinase [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 440

 Score =  278 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 66/371 (17%), Positives = 131/371 (35%), Gaps = 36/371 (9%)

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
           +  S  E+  D + I   EG I   N     L  +   +   +     L     +     
Sbjct: 99  RFRSGAESLPDAVVITTEEGTIFWCNHLAQHLLNFRWPEDNGQNILNLLRYPEFTNYM-- 156

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572
                     Q   +           +  R++           + + DI++  Q +    
Sbjct: 157 --------KGQDFSRPLTLQLNNSHHVEFRVMPY---SEGQLLMVVRDITQMHQLEG--- 202

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
                       + +F A VSHE+RTPLT + G+ E+++ +        +     N +  
Sbjct: 203 -----------ARRNFFANVSHELRTPLTVLQGYLEMMQEETLDAALRGKA---LNTMQE 248

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
               +  +V  LL +S+IE+       E V +   +       Q  +  +   I      
Sbjct: 249 QTRRMDGLVKQLLTLSRIEAATAIDLNEKVDIPLMLRVLQREAQTLSQGRH-EIVFRVNE 307

Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752
           N+ R+  +   ++    N++ NAI+ TP+G +I +            +V D G G+    
Sbjct: 308 NL-RVFGNEEQLRSAVSNLVYNAINHTPAGTRIEVCWQKIPQG-AQFQVSDNGPGIAAEH 365

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP--- 809
           L +  + F ++  ++  +  G+GLGL + K  +  +  +  I S    G+      P   
Sbjct: 366 LPRLTERFYRVDKARSRQTGGSGLGLAIVKHALSHHDSRLEIMSEDGLGSRFVFTLPNRL 425

Query: 810 LYDTSHPHDCI 820
           +   S   + +
Sbjct: 426 IVPASLAENTV 436


>gi|182411863|ref|YP_001816929.1| multi-sensor signal transduction histidine kinase [Opitutus terrae
            PB90-1]
 gi|177839077|gb|ACB73329.1| multi-sensor signal transduction histidine kinase [Opitutus terrae
            PB90-1]
          Length = 1043

 Score =  278 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 92/687 (13%), Positives = 196/687 (28%), Gaps = 63/687 (9%)

Query: 173  REFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP 232
            R+ +G  G   +   R+            +    +   ++    + +         +   
Sbjct: 370  RKIAGIAGLA-LDNARLYRSACQAAAAEAQALREVERSEQRFRFIWEANVFGIGTVARSG 428

Query: 233  HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL 292
             +   N   +    Y   D           T+      +      +             +
Sbjct: 429  QILTANGTLAQLLGYTQDDVAAGRASMNERTAPGWHFVDMHTGEELVRTGRCAPYEKEYV 488

Query: 293  QNNSKESFE----------------YLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-FV 335
            + +                       L            D    L    +D  P    ++
Sbjct: 489  RPDGARVQALVCGMVLPQTDESLVFVLDLTAQKHAERALDRQSLLLKTIIDAMPAMVGYL 548

Query: 336  YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIA 395
                     N  +                 +  L+                   +     
Sbjct: 549  GLDERFQLHNEKYAKWLGVDGFAI--QGRTMRELVGDEAYPRIAPYLRAAFRGRN----- 601

Query: 396  ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
               R  T     +    +        +             +  + +  ++ +   + +  
Sbjct: 602  --MRHETTLRTGDRERHLIASYRPDRDADGRVCGVVIHAYDITERKETEQALAEALTRYR 659

Query: 456  SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP-FTVFLEQNTPSVMNHYLT 514
             + +A    +     +G     NR   +  G      L +  +   +     ++      
Sbjct: 660  FLADAMPQMVWTALPDGQPDYVNRRWLETTGMTEAASLARDGWLEAVHFEDRAITRELWH 719

Query: 515  EILSLDLRQTLEKITLGS-TKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKN 569
              ++  +    E        K        +              +  +  D+ E ++   
Sbjct: 720  RAVAQCVP--FEHECRLRCGKNPTWRWHLVRALPRRDDHLAVVQWVGSATDMDEQRRAYA 777

Query: 570  KLSHAKKIA------------------EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
            +L  A+                      + ++    F   VSH++RTPL  + GF+E I 
Sbjct: 778  ELDEARARLKSHAEELEARVRMRTATLREANAELEAFTYSVSHDLRTPLQFVRGFAEAI- 836

Query: 612  NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
                G   +    +Y   I R+   +  I+ DLL  S++   + +L    + LD+ +S+ 
Sbjct: 837  RTDAGATLSAENRDYLQRIIRAATRMDTIIQDLLSYSRL--ARTDLQLAELPLDDVISDV 894

Query: 672  ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG--GQIIIST 729
            ++    +A  ++   R S  + +P + AD   + Q   N++SNA+ FT +G    + I  
Sbjct: 895  LAN--QHAMIRQTSARVSVDSPLPTVRADRTGLFQAISNLVSNALKFTRAGQPPVVRIRA 952

Query: 730  THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
              +    V L V D G+G+     E+    F ++ +       GTG+GL L +  V    
Sbjct: 953  EVSERG-VRLWVEDEGIGIDPRHHERIFGLFERLHSPG--EYPGTGIGLSLVRKAVSRMG 1009

Query: 790  GKFYIFSTPAKGTLIEIIFPLYDTSHP 816
            G   + S P  G+   I FP  +   P
Sbjct: 1010 GSCGLESVPDAGSRFWIEFPAVNAVLP 1036



 Score =  131 bits (329), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 64/588 (10%), Positives = 143/588 (24%), Gaps = 84/588 (14%)

Query: 69  DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID 128
           ++   F        V   W+  A G    ++       G  A +  G R   +       
Sbjct: 99  EAARNFEIMANNAPV-LIWSTGADGCCAFVNRNWVTFTG-RASEPHGRRPGQLHPADAAR 156

Query: 129 PNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFG-IVHVN 187
            +    + +  +  +  +  L   + T  Y  +   A+P + ++ EF G+ G    V  +
Sbjct: 157 YHAVSTEAMAARKPFRIEYRLRRADDT--YRWLHEYAVPRFDQDGEFEGYIGSCNDVTDS 214

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ------------------- 228
           R + +  A   RL    +   ++ K    + +      +                     
Sbjct: 215 RHEREELAFIARLQAALTESLDLDKCADVLGQAFVPRIADWCSIHLVNDAGKLELVRLQR 274

Query: 229 ----SPPPHLRMKNKVSSLTEYYAH---------KDDVLKTEKYPLLTSEESSLPEQEDF 275
                     R      SL +              D+ L           E      +  
Sbjct: 275 NDRVPAGGVPRPAAAPDSLEQRVVREGALVQLTGPDEALLRTLAADEAQLERLRATPDIT 334

Query: 276 HTINLNQYTKKQYFGTLQNNSKESFEYLSHRN---------------------------- 307
           +   +    +    G L   +  S   L                                
Sbjct: 335 Y-AGVPLRARGAIIGVLALATLASGRRLGAEECELVRKIAGIAGLALDNARLYRSACQAA 393

Query: 308 --HPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364
                     +  E       +        V   G +  AN +   L  Y   D      
Sbjct: 394 AAEAQALREVERSEQRFRFIWEANVFGIGTVARSGQILTANGTLAQLLGYTQDDVAAGRA 453

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
            ++          +      ++      C         ++ +     A+           
Sbjct: 454 SMNERTAPGWHFVDMHTGEELVR--TGRCAPYEKEY--VRPDGARVQALVCGMV-----L 504

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
           P+         +    +  +R ++ + + L +I++A    +  +  +      N   +K 
Sbjct: 505 PQTDESLVFVLDLTAQKHAERALDRQSLLLKTIIDAMPAMVGYLGLDERFQLHNEKYAKW 564

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE-KLLSLRI 543
            G     I  +     +       +  YL           +   T   T +  + L    
Sbjct: 565 LGVDGFAIQGRTMRELVGDEAYPRIAPYLRAAFRGRN---MRHETTLRTGDRERHLIASY 621

Query: 544 IIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
              +          +  +DI+E K+ +  L+ A       +      +
Sbjct: 622 RPDRDADGRVCGVVIHAYDITERKETEQALAEALTRYRFLADAMPQMV 669



 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/214 (7%), Positives = 53/214 (24%), Gaps = 6/214 (2%)

Query: 56  DQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIG 115
           D  +   +     ++   + F       +  W     G    ++    +T G      + 
Sbjct: 640 DITERKETEQALAEALTRYRFLADAMP-QMVWTALPDGQPDYVNRRWLETTGMTEAASLA 698

Query: 116 M-RLCDVSDILHIDPNNHIGD-LLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNR 173
                +            +    + +   +  +  L   +         + ALP    + 
Sbjct: 699 RDGWLEAVHFEDRAITRELWHRAVAQCVPFEHECRLRCGKNPTWR-WHLVRALPRRDDHL 757

Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH 233
                +  G            A       +     E  +    +        + +     
Sbjct: 758 AVV--QWVGSATDMDEQRRAYAELDEARARLKSHAEELEARVRMRTATLREANAELEAFT 815

Query: 234 LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
             + + + +  ++     + ++T+    L++E  
Sbjct: 816 YSVSHDLRTPLQFVRGFAEAIRTDAGATLSAENR 849



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/150 (11%), Positives = 41/150 (27%), Gaps = 8/150 (5%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           R ++   +        +       I     +G     NR      G   E   R+P    
Sbjct: 91  RRSRVARDEAARNFEIMANNAPVLIWSTGADGCCAFVNRNWVTFTGRASEPHGRRP--GQ 148

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSL 556
           L     +  +   TE ++                ++    L                Y  
Sbjct: 149 LHPADAARYHAVSTEAMAARKP--FRIEYRLRRADDTYRWLHEYAVPRFDQDGEFEGYIG 206

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
           + +D+++ + E+ +L+   ++    +    
Sbjct: 207 SCNDVTDSRHEREELAFIARLQAALTESLD 236


>gi|146306221|ref|YP_001186686.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp]
 gi|145574422|gb|ABP83954.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp]
          Length = 971

 Score =  278 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 107/564 (18%), Positives = 197/564 (34%), Gaps = 26/564 (4%)

Query: 259 YPLLTSEESSLPEQEDFHTI-NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
             L  + E     +E  H         +           +E    L    +       + 
Sbjct: 277 MALPAAGELDFGLRELTHYSYEEAVRREVLKPEDFNLTKREGMAPLLRAMNEERGNVQEV 336

Query: 318 GENLTPETVDKCPIP------FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
                 + V    IP        V     +F+                I        L  
Sbjct: 337 LLGGRKQLVAWSEIPQTGWRLLLVVDEEQIFHETNQLAERYMQIGYLLIAGLLAFYLLFF 396

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
           A           + L     +   A      ++                +     +    
Sbjct: 397 A----------LMWLRSRHLSNQLARPIAGIVEMAGSLGQGNYLPASPDSRIAEVSRLAE 446

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
            ++      R ++ + +     L  +LE+T++ +  IN + + +  +    + FG     
Sbjct: 447 AVQQAGKQLRASELERQEAQNSLQLVLESTTESLWHINTQDLTIELSERFVRRFGLGGRH 506

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
           +    F   +  +    + H              +        +   L L    K L   
Sbjct: 507 LSLSEFNQRVHPDDLERLRHLRKHFAESGDEH-FDAEYRYLDAKGDYLWLLSRGKVLTRD 565

Query: 552 S-----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
                   + T  DI+  KQ + +L HA   A   S  KS FL+ +SHE+RTPL AI GF
Sbjct: 566 DNGWPLRIAGTHVDITRLKQVQEELRHASLEALAASQAKSRFLSSMSHELRTPLNAIHGF 625

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
           +++I+ +           +YA  I  +   +  +V+D+LD+S IES +  L  +P+ +  
Sbjct: 626 AQLIEMETQDKADTGPESDYAREIVNASRHLTSLVDDILDLSSIESRRQQLQLQPIEIGG 685

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQI 725
            ++    LV     ++++ ++       P  +  D R V+QI LN+LSNAI +    G I
Sbjct: 686 LLNGCAELVLPEVQQRQLQLQVMEPAQPPLFVQGDPRRVRQILLNLLSNAIKYNSPRGMI 745

Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
            +     ++  V L V DTG G++  +  +  +PF ++   +     GTG+GL L + + 
Sbjct: 746 RMGYEVRAD-CVRLWVDDTGPGLSTEQQAQLFQPFQRL-GRESSNIPGTGIGLVLCRELA 803

Query: 786 DANMGKFYIFSTPAKGTLIEIIFP 809
               G+  + S P  G+   +  P
Sbjct: 804 SLMEGEIGLRSEPGVGSRFWLDLP 827


>gi|189465235|ref|ZP_03014020.1| hypothetical protein BACINT_01580 [Bacteroides intestinalis DSM
           17393]
 gi|189437509|gb|EDV06494.1| hypothetical protein BACINT_01580 [Bacteroides intestinalis DSM
           17393]
          Length = 390

 Score =  278 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 90/377 (23%), Positives = 158/377 (41%), Gaps = 34/377 (9%)

Query: 445 RKMEIEVMQL-CSILEATSDGIAIINREGIILSTNRAVSKLF---------GYPVEDILR 494
             +E    Q    IL+A  D + + +        N    +L          G   ED   
Sbjct: 36  EDLERFRKQYGKEILDAIPDMLTVFD-------YNLDYIELLSSPDTNHVEGLSGEDKSH 88

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554
                 + ++    +   + +++        E        E ++     ++  L      
Sbjct: 89  PNLKDIVPESEYRKIRANMEKVMRTGCTSIGEHSLWF---EGEMHHYENLVCPLGD-KYL 144

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                D++       +L+ A+  AE+    KS FL+ +SHEIRTPL AI+GFS       
Sbjct: 145 LCMCRDVTSRVNALRELAAARVKAEESDRLKSAFLSNMSHEIRTPLNAIVGFS----RLV 200

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
             P       +Y N I+++  L+L + ND+LD+S++ESG +    E V+L  A  E    
Sbjct: 201 IDPGHEGDKEDYCNIIEKNSELLLCLFNDILDLSEMESGTLEFVREKVNLYHACLEEYDS 260

Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
            +L  N K +++     +    ++ D   + Q+ +N+LSNA  FTP+G    I   +   
Sbjct: 261 HRLKVN-KGVILILDDVDEELCVMGDRMRIMQVLMNLLSNAAKFTPTG---EIHFGYQLR 316

Query: 735 EEVI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
             ++   V+DTG+G+    + K  + F           +GTGLGL +++ +V+   G+ +
Sbjct: 317 GNIVQFYVKDTGIGIPANRVAKIFERF----GKINNFAQGTGLGLTVSRMLVERMGGRIW 372

Query: 794 IFSTPAKGTLIEIIFPL 810
           + S    GT      PL
Sbjct: 373 VRSGEGIGTTFFFTLPL 389


>gi|46581783|ref|YP_012591.1| sensor protein ZraS [Desulfovibrio vulgaris str. Hildenborough]
 gi|46451206|gb|AAS97851.1| sensor protein ZraS [Desulfovibrio vulgaris str. Hildenborough]
 gi|311232340|gb|ADP85194.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfovibrio vulgaris RCH1]
          Length = 679

 Score =  278 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 104/638 (16%), Positives = 206/638 (32%), Gaps = 38/638 (5%)

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY 246
           + +       G  L + F         HS+  + +  +       P +R    VS   E 
Sbjct: 44  STMTRILTEKGASLIRSFEAGARTGMRHSAGLRLQILLEEMAD-QPDIRFIAVVSPEGEV 102

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
            AH D      +       +      E   T+             L +  +    ++   
Sbjct: 103 LAHSDMTRVGTRLFNPDELQRLDAGTEPRWTLLPGDGGDDFVVFRLFDPVRRRAMFIPEG 162

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
              +     D          D+ P                    L+ +     +   G  
Sbjct: 163 GRMAPPPPDDARLEHPD---DQRP----RSRAERFARWRERQEGLSPFPGSLPLPEDGRG 215

Query: 367 ST-LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
            T   +      +       +             L    +    +          A    
Sbjct: 216 DTGRREHGGHGMHGGFDASCMRSPQGPPPVILVGLDMQPFAEARAQDRNHALLMLALAGG 275

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
             +            +  +R++         ++ +  DG+   +REG I   N A + L 
Sbjct: 276 VAVAGVLSLVWSRREQAARRRLMASQAFAAKVVSSLPDGLVAFDREGRIDECNAAGADLL 335

Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
           G      L +  +              +   L                 +   + L +  
Sbjct: 336 GVGASSALGQGASWL------PAPLDAMAAYLLGGGV-LAPTEVECRRADGTSVPLGVRG 388

Query: 546 KKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
            ++           L + D+SE +  + ++   +K+A        +  A V+HEIR PL+
Sbjct: 389 ARIVDDEGRAVGVILLLRDLSEVRHLEAEVRRREKLA-----AVGNLAAGVAHEIRNPLS 443

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           +I G++      RF    + R  E A  + +  + +  +++DL+ +S+      ++   P
Sbjct: 444 SIKGYATYF-GTRFPEGSDDR--EAARVMVQEVDRLNRVISDLIGLSRPS----DIRPRP 496

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
             + + V  A+ LV+  A  +++ +R   A ++P  L D     Q  LN+  N +     
Sbjct: 497 TRVADIVDHALRLVRPDAEARKVAVRFEAAPDVPEALVDPDRFAQALLNVCLNGMEAMGD 556

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           GG+++++     +  V + VRDTG G++   L +   P+         +G+GTGLGL + 
Sbjct: 557 GGELMVTAYRHGDGRVAVSVRDTGPGISPENLSRVFDPYFTT------KGQGTGLGLAIV 610

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819
             +++A+ G+    S P  GT    I P        D 
Sbjct: 611 HKIIEAHGGEVGFRSEPGHGTECTFILPAVHAGATPDI 648



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 26/230 (11%), Positives = 50/230 (21%), Gaps = 10/230 (4%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D  G + E +      +G  A   +G     +   L          LL        +   
Sbjct: 319 DREGRIDECNAAGADLLGVGASSALGQGASWLPAPLDAMA----AYLLGGGVLAPTEVEC 374

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
              +GT+  VP+ +    I        G     ++          A  +R + K + +  
Sbjct: 375 RRADGTS--VPLGVRGARIVDDEGRAVGV--ILLLRDLSEVRHLEAEVRRRE-KLAAVGN 429

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
           +  G +   +         +     R     S   E        +      +      S 
Sbjct: 430 LAAGVAHEIRNPLSSIKGYATYFGTRFPEG-SDDREAARVMVQEVDRLNRVISDLIGLSR 488

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
           P         +             +                  A  D   
Sbjct: 489 PSDIRPRPTRVADIVDHALRLVRPDAEARKVAVRFEAAPDVPEALVDPDR 538


>gi|327355100|gb|EGE83957.1| sensor histidine kinase/response regulator [Ajellomyces dermatitidis
            ATCC 18188]
          Length = 2401

 Score =  278 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 89/419 (21%), Positives = 164/419 (39%), Gaps = 41/419 (9%)

Query: 410  SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL-CSILE-----ATSD 463
             L       E  +    +        + +  +I    +      L  ++L+       S+
Sbjct: 1722 WLVAAASDHENGDVAFADGLAFSEVEDKMAQQITHYTLRTREPVLVHNVLDDERFSNVSE 1781

Query: 464  GIAIINREGI------ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
              A  N  G       I+  N     L G            V  + N+ +  N  +  ++
Sbjct: 1782 AYAARNPHGKSVIALPIIQAN----NLLGV---------IHVEGKPNSFTQRNLVVLRLV 1828

Query: 518  SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW-KQEKNKLSHAKK 576
               +  +L    L     +           +           +     K  + +  H  K
Sbjct: 1829 CNQVGISLANAFLYRNASKVS---AANAAMVEAQKRALALAREAERKSKVAEAEAKHNVK 1885

Query: 577  IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
            + E  +  KS FLA VSH++RTP+  +IG SE++K        +     Y   I    + 
Sbjct: 1886 LKEDAAKAKSIFLANVSHDLRTPMNGVIGLSELLKKTSL----DREQDGYVESIRVCADT 1941

Query: 637  VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696
            +L ++ND+LD SK+E+GKM +   P++L E ++E +  ++    +  +          P 
Sbjct: 1942 LLTLINDILDFSKLEAGKMKVSTVPLNLRETIAEVVRALRYTHRDCGLKTIEDLDGVDPN 2001

Query: 697  --ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH--TSNEEVILR--VRDTGVGMTN 750
              ++ D   + QI +N+LSN+  FTP G  + +           + +   V DTG+G++ 
Sbjct: 2002 LLVMGDPVRLHQIFMNLLSNSYKFTPKGS-VTVKAKVTDEDEGRIRITCKVADTGIGISG 2060

Query: 751  YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA-NMGKFYIFSTPAKGTLIEIIF 808
             +L +  +PF Q  +S      G+GLGL + KA+++    GK ++ S    GT +    
Sbjct: 2061 EQLVRLFRPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGKIWLQSEEGVGTTVTFTL 2119


>gi|328544566|ref|YP_004304675.1| Sensor histidine kinase with a PAS domain [polymorphum gilvum
           SL003B-26A1]
 gi|326414308|gb|ADZ71371.1| Sensor histidine kinase with a PAS domain [Polymorphum gilvum
           SL003B-26A1]
          Length = 588

 Score =  278 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 99/390 (25%), Positives = 179/390 (45%), Gaps = 14/390 (3%)

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
           ++   ++  +     +L  + E   D +A++   G +LS      +L G P   I     
Sbjct: 188 LEQHRSENLVRDRDQRLKLLSENVDDLVAVLGEGGDVLSLAGPADRLLGAPARLIRTDGL 247

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLE-KITLGSTKEEK-----LLSLRIIIKKLPFS 551
              +      +    +++    ++ +  E +I  G+T+  +        + +  ++ P  
Sbjct: 248 FQRVHVADRPLFLKTVSDAACDEVPRCAELRIRTGATRPGEVGIADYRWMEMTCRRPPVR 307

Query: 552 SC------YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
           S           + DIS  +   + L+  +  AE  S+ ++ FLA +  E+RTPL AI+G
Sbjct: 308 SGASASGTVVAVLRDISARRLHDDALAAERSAAEATSAARTRFLASIGQELRTPLNAILG 367

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
           F++ +      P  + R  +Y + I +SG  +L +V DLLD+SKIE+G+ +L  EP  L 
Sbjct: 368 FAD-LLRAGSSPSDDSRSRKYIDLIHQSGTHLLQMVEDLLDMSKIEAGRYDLSIEPFDLP 426

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725
           + +     ++   A+ K I I T   N +    AD R+  QI L++LSNA+ F  SG + 
Sbjct: 427 QCLETCRHMLATEASGKGIEIVTEVDNGLGAFPADRRACMQIVLSLLSNAVKFGASGSR- 485

Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
           ++       + V L VRD+G G+   +L +  + + +  +       GTGLGL + KA+ 
Sbjct: 486 MVLCARRDRDRVELSVRDSGPGIAATDLPRLGQSYFRTRDPALCEAPGTGLGLSVVKALA 545

Query: 786 DANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
           +   G   + S P  GT + +  PL     
Sbjct: 546 ELYGGAMTVDSLPGTGTCVTVTLPLRTAHA 575


>gi|312885457|ref|ZP_07745096.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM
           18603]
 gi|311302037|gb|EFQ79067.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM
           18603]
          Length = 1157

 Score =  278 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 77/247 (31%), Positives = 132/247 (53%), Gaps = 3/247 (1%)

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + +  +S   +  E    +KS+FLA +SHE+RTPL +I+  + ++K+ +   L     I+
Sbjct: 470 EARRSISQKMRELETTGKYKSEFLANMSHELRTPLNSILVLARILKDNKAQTLT-EDQIK 528

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           Y+  I  +GN +L ++ND+LD+SKIESGK+ +  E V + E + +  SL    A  K I 
Sbjct: 529 YSTVIFNAGNDLLTLINDILDLSKIESGKLEILNEKVKVSEILKDVESLFAEVAKNKNIT 588

Query: 686 IRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-VILRVRD 743
             T   NN+P  IL D+   +Q+  N+LSNA  FT   G + +        + + L ++D
Sbjct: 589 FTTQQNNNVPEYILTDMVRSQQVIKNLLSNAFKFTSENGSVSVIANLDETGKNLALSIKD 648

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           +G+G+   + +   + F Q   S   +  GTGLGL +++ +     G   + S P +G+ 
Sbjct: 649 SGIGIPYDKQKLIFEAFQQADGSTSRKYGGTGLGLSISRELTHLLGGAIKLKSKPGEGSE 708

Query: 804 IEIIFPL 810
             ++ PL
Sbjct: 709 FTLLLPL 715


>gi|262404177|ref|ZP_06080732.1| sensor histidine kinase [Vibrio sp. RC586]
 gi|262349209|gb|EEY98347.1| sensor histidine kinase [Vibrio sp. RC586]
          Length = 681

 Score =  278 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 68/256 (26%), Positives = 116/256 (45%), Gaps = 15/256 (5%)

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           L   K  A+  +  KS FLA +SHEIRTP+  ++G ++++           +  ++   +
Sbjct: 288 LEVEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILLKDELTA----KQRQHLTSL 343

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
             SG  ++ ++N++LD SKIE GK  L +    L   +    S+      EK +    + 
Sbjct: 344 YESGEHMMTLLNEILDYSKIEQGKFELDYSSFPLRSIIGSIKSIYSSLCFEKGLKFHLNS 403

Query: 691 A-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT---SNEEVILRVRDTGV 746
              +      D   ++QI  N+LSNA+ FT  G  + I            +I++V+D+G+
Sbjct: 404 EITDTRWYYGDKARLRQIIFNLLSNAVKFTERGF-VTIGLAEEATQEGHYLIIKVQDSGI 462

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+    L +  +PF Q  +    R  GTGLGL + K +     G   + S   +GT  E+
Sbjct: 463 GIAKEALGRIFQPFEQAESHTTRRFGGTGLGLAIVKQIAALMNGTVSVQSEVGRGTCFEV 522

Query: 807 IF------PLYDTSHP 816
                   P+ +   P
Sbjct: 523 RVKLAITEPIKEEYKP 538


>gi|258621420|ref|ZP_05716454.1| sensor histidine kinase [Vibrio mimicus VM573]
 gi|258586808|gb|EEW11523.1| sensor histidine kinase [Vibrio mimicus VM573]
          Length = 733

 Score =  278 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 68/250 (27%), Positives = 118/250 (47%), Gaps = 10/250 (4%)

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           L   K  A+  +  KS FLA +SHEIRTP+  ++G ++++           +  ++   +
Sbjct: 340 LEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILLKDELTA----KQRQHLTSL 395

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
             SG  ++ ++N++LD SKIE GK  L + P  L   +    S+      EK +  +   
Sbjct: 396 YESGEHMMYLLNEILDYSKIEQGKFELDYSPFPLRSIIGSIKSIYSSLCFEKGLQFQLHS 455

Query: 691 AN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT---SNEEVILRVRDTGV 746
              +      D   ++QI  N+LSNA+ FT  G  + +  +         + ++V+D+G+
Sbjct: 456 EIIDTRWYYGDKARLRQIIFNLLSNAVKFTEQGF-VSVGLSEENIDDEYFLTIKVQDSGI 514

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+    L++  +PF Q  +    R  GTGLGL + K + +   G   + S   +GT  E+
Sbjct: 515 GIPQDALDRIFQPFEQAESHTTRRFGGTGLGLAIVKQIAELMSGTVSVQSEVGQGTCFEV 574

Query: 807 IFPLYDTSHP 816
              L   S P
Sbjct: 575 RVKLA-ASEP 583


>gi|258626849|ref|ZP_05721656.1| sensor histidine kinase [Vibrio mimicus VM603]
 gi|258580896|gb|EEW05838.1| sensor histidine kinase [Vibrio mimicus VM603]
          Length = 733

 Score =  278 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 68/250 (27%), Positives = 118/250 (47%), Gaps = 10/250 (4%)

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           L   K  A+  +  KS FLA +SHEIRTP+  ++G ++++           +  ++   +
Sbjct: 340 LEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILLKDELTA----KQRQHLTSL 395

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
             SG  ++ ++N++LD SKIE GK  L + P  L   +    S+      EK +  +   
Sbjct: 396 YESGEHMMYLLNEILDYSKIEQGKFELDYSPFPLRSIIGSIKSIYSSLCFEKGLQFQLHS 455

Query: 691 AN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT---SNEEVILRVRDTGV 746
              +      D   ++QI  N+LSNA+ FT  G  + +  +         + ++V+D+G+
Sbjct: 456 EIIDTRWYYGDKARLRQIIFNLLSNAVKFTEQGF-VSVGLSEENIGDEYFLTIKVQDSGI 514

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+    L++  +PF Q  +    R  GTGLGL + K + +   G   + S   +GT  E+
Sbjct: 515 GIPQDALDRIFQPFEQAESHTTRRFGGTGLGLAIVKQIAELMSGTVSVQSEVGQGTCFEV 574

Query: 807 IFPLYDTSHP 816
              L   S P
Sbjct: 575 RVKLA-ASEP 583


>gi|229514161|ref|ZP_04403622.1| sensor protein TorS [Vibrio cholerae TMA 21]
 gi|229348141|gb|EEO13099.1| sensor protein TorS [Vibrio cholerae TMA 21]
          Length = 984

 Score =  278 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 71/238 (29%), Positives = 118/238 (49%), Gaps = 8/238 (3%)

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
           ++ AE+ S  KS FLA +SHEIRTP+  ++G + ++++             Y   I+RSG
Sbjct: 460 RQQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLQDTTLTST----QQHYVQVINRSG 515

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
             +L I+ND+LD SKIE+G + +H     L   V E   L+Q  A EK I +     +++
Sbjct: 516 RSLLAILNDVLDYSKIEAGHLEIHHTHFDLYRLVRETHELMQSRAREKGITLTYHIDDDV 575

Query: 695 PRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-VILRVRDTGVGMTNYE 752
            +    D   + Q+  N++ N I FT  G ++ I      + + +   V D+G+G+   E
Sbjct: 576 TQYWQGDEIRIGQVLNNLVGNGIKFTEQG-EVRIRVRLAPDGQGIRFAVEDSGIGIAEEE 634

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
                  F Q    +  +  GTGLGL +++ +V A  G+  + S   +G+      PL
Sbjct: 635 QATLFDAFTQADAGR-RKLGGTGLGLAISRKLVQAMGGELQLASQLGQGSCFWFTLPL 691


>gi|254780701|ref|YP_003065114.1| putative two-component sensor histidine kinase transcriptional
           regulatory protein [Candidatus Liberibacter asiaticus
           str. psy62]
 gi|254040378|gb|ACT57174.1| putative two-component sensor histidine kinase transcriptional
           regulatory protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 495

 Score =  278 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 95/249 (38%), Positives = 151/249 (60%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I+E +  K+     +K AE+E+  KS FLA +SHE+RTPL AI+GFSEVI+ +  GPL N
Sbjct: 225 IAELEVAKSLSDETRKRAEEENLAKSRFLASMSHELRTPLNAILGFSEVIELETMGPLNN 284

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
             Y EY   I RSG  +L+++N++LD+S+IE+G+  L    +SL + V E I ++QL A 
Sbjct: 285 ETYKEYIGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQLRAQ 344

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
           EK I I      ++  + AD + ++Q+ LN+LSNA+ FT  GG++ ++   TS     + 
Sbjct: 345 EKNIEIFQKIDPSLSSVWADEKGMRQVILNLLSNAVKFTAIGGRVHVTVGWTSGRGQYIS 404

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           ++D G G+   E+   +  FGQ   + +   +G GLGLP+A++++  + G+F I S   +
Sbjct: 405 IKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHGGQFLIRSKLRE 464

Query: 801 GTLIEIIFP 809
           G  +  I P
Sbjct: 465 GVEVIAILP 473


>gi|188578874|ref|YP_001915803.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|188523326|gb|ACD61271.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 727

 Score =  278 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 71/250 (28%), Positives = 119/250 (47%), Gaps = 10/250 (4%)

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + + +L  AK+ AE     K +FLA +SHEIRTPL  II   E+I + +          +
Sbjct: 50  ELEQELLRAKQAAEAAMLAKGEFLATMSHEIRTPLNGIIPMLELISSGQLSL----DQRD 105

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
                  S   +L IV+D+LD SK+E+ K+ L     +L E +   + L+Q  A  +++ 
Sbjct: 106 MLQTATSSSLQLLRIVDDILDYSKLEANKLELEITTFNLRELLDGVVQLLQRTAEGRQLR 165

Query: 686 IRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH----TSNEEVILR 740
           +      ++   +  D   ++Q+  N++ NAI FT  G  + I         +   +  +
Sbjct: 166 LSLDIEPSVRLLVRGDPIRLRQVLGNLIGNAIKFTERGS-VDIQLRRLGETRAQHLLRFQ 224

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           VRDTG+G+   +  +  + F Q   S      GTGLGL + K ++D   G+  + S P +
Sbjct: 225 VRDTGIGIAPDQQTRLFRSFAQADASTTRLYGGTGLGLAICKRIIDLMGGRIGVESEPGR 284

Query: 801 GTLIEIIFPL 810
           G+      PL
Sbjct: 285 GSTFWFEIPL 294


>gi|114777683|ref|ZP_01452643.1| probable sensor/response regulator hybrid protein [Mariprofundus
           ferrooxydans PV-1]
 gi|114551899|gb|EAU54433.1| probable sensor/response regulator hybrid protein [Mariprofundus
           ferrooxydans PV-1]
          Length = 1043

 Score =  278 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 77/249 (30%), Positives = 126/249 (50%), Gaps = 9/249 (3%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E  +  ++L+ A+  A   +  KSDFLA +SHEIRTP+ A+IG S  +  ++     + +
Sbjct: 296 EVARRTSQLAEARDRALAAAQVKSDFLANMSHEIRTPMNAVIGLS-HLAREQ---AESHQ 351

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             +Y N I  +   +L I+ND+LD SKIE+GKM++       D+ +     +  L A  K
Sbjct: 352 QQDYLNKILAASKSLLIIINDILDFSKIEAGKMHMETVVFDFDDTLKNIAGVGGLEAGRK 411

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH----TSNEEVI 738
            +         +P++  D   + Q+ LN+++NAI FT  G ++I++           E+ 
Sbjct: 412 GLDFLFDVPPQLPKLRGDPVRLGQVLLNLVNNAIKFTSRG-EVIVTVKILAMDEHETELS 470

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
             V DTG+GM+  +L      F Q   S   +  GTGLGL + K +V    G+  + STP
Sbjct: 471 FSVSDTGIGMSQEQLAGIFDAFSQADTSITRKFGGTGLGLAICKQLVSMMQGEIGVESTP 530

Query: 799 AKGTLIEII 807
            +G+     
Sbjct: 531 GEGSRFYFT 539


>gi|17228803|ref|NP_485351.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120]
 gi|17130655|dbj|BAB73265.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120]
          Length = 585

 Score =  278 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 80/260 (30%), Positives = 136/260 (52%), Gaps = 16/260 (6%)

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
              +L  A++ AE+ S  KS+FLA VSHEIRTPL  +IGF ++I       +      ++
Sbjct: 314 LYKELEAARQKAEEASRLKSEFLANVSHEIRTPLNGMIGFLKLILEGMADDV--EEKNQF 371

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
            +   +    +L+I+ND+LDI+KIE+GKM L   P+ L+E  S+  + ++  A  K +  
Sbjct: 372 LSEAHQLSLHLLNIINDILDIAKIEAGKMELVCAPIKLEELFSDVDNFMRPQAEVKNLSF 431

Query: 687 RTSFAN--NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH--------TSN-- 734
           R       +   +  + + + Q+ LNI+ NAI FT  GG I ++             N  
Sbjct: 432 RMQLPPTSDEIVVQGNYQRLLQVMLNIVGNAIKFTHEGG-ITVTADVVLKKGKLQEQNFP 490

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
             V +R+ DTG+G++  + +K  + F Q+  S+  +  GTGLGL +++ +V+   G+ + 
Sbjct: 491 GMVRVRIADTGIGVSLDQQDKLFQLFSQVDGSRTRQYGGTGLGLAISQKLVETMGGEVHF 550

Query: 795 FS-TPAKGTLIEIIFPLYDT 813
           +S     G+ +    PLY  
Sbjct: 551 YSLGEGLGSTVTFTVPLYQQ 570


>gi|23013955|ref|ZP_00053800.1| COG4251: Bacteriophytochrome (light-regulated signal transduction
           histidine kinase) [Magnetospirillum magnetotacticum
           MS-1]
          Length = 669

 Score =  278 bits (710), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 86/460 (18%), Positives = 174/460 (37%), Gaps = 15/460 (3%)

Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
            +          + L +  +L         ++  ++R  I    +  +I       L   
Sbjct: 214 TTEPLYSGEFHWAILKNREELKAAVESGFSLISAAERRTIEDRWQGQSITAPMSPELLRN 273

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GI 473
                 A      +    +           R +     +  +I +  +D I I + E G 
Sbjct: 274 LRTSGLAVLAFGLLLTAWVWALRRQVAARTRDLATSESRFRTIFDNINDAIFIHDAESGA 333

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
           IL  NR   +++G+  ++    P   F +   P    H L  I    + +          
Sbjct: 334 ILQVNRRAEEMYGWTADEFRTLPVERFSQGVAPYDQEHALDRIARSAI-EPQVFEWYSRH 392

Query: 534 KEEKLLSLRIIIKK---LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
           K+  L    + I++           + + DISE K+ + KL+   +   + ++    F  
Sbjct: 393 KDGSLFWTEVGIRRACLDGDVERVLVVVRDISERKETEEKLTRTVEALTRSNTDLESFAY 452

Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650
             SH++R PLT ++ +S+ + ++    LG+    E   +I +    ++  V  LLD ++I
Sbjct: 453 AASHDLREPLTMVVRYSQFLDSRHRESLGHD-GGEALGFILKGVKQMMRQVEGLLDYARI 511

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALN 710
           ++G   L   PV     ++E + ++    ++    +  S    +P I+ D   + Q+  N
Sbjct: 512 DAGDRRLK--PVDTQTILAEVLDILAPRISKAGAEVDVS---PLPPIIGDQLQITQLFQN 566

Query: 711 ILSNAIHF--TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
           ++ NAI +       ++ +S    S+     RV D G+G+     E+    F ++     
Sbjct: 567 LIGNAIKYRSADRPPRVSVSGKILSDGTAEFRVCDNGIGIEPSYREQVFVIFKRLHTQDA 626

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           + G   G+GL L K +V+ + G+  I      GT      
Sbjct: 627 VPGG--GIGLALCKRIVEHHAGRIRIEDNAGGGTCFVFTI 664



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/290 (10%), Positives = 78/290 (26%), Gaps = 15/290 (5%)

Query: 169 YSRNREFSGFRGFG-IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ 227
           Y R+R    FR +     +             +D+  +    IKKG     +    ++S 
Sbjct: 162 YLRDRAIDSFRRYSSYDTLIDAAAKGEVKTLCVDQPPATYLMIKKGVHDRFRTTEPLYSG 221

Query: 228 QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287
           +     L+ + ++    +        L +        +           +  L +  +  
Sbjct: 222 EFHWAILKNREEL----KAAVESGFSLISAAERRTIEDRWQGQSITAPMSPELLRNLRTS 277

Query: 288 YFGTLQ-NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH--GNLFYA 344
               L       ++ +   R   + +      E+      D      F++    G +   
Sbjct: 278 GLAVLAFGLLLTAWVWALRRQVAARTRDLATSESRFRTIFDNINDAIFIHDAESGAILQV 337

Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
           N     +  + + D+                   +A+  +     +       +R     
Sbjct: 338 NRRAEEMYGWTA-DEFRTLPVERFSQGVAPYDQEHALDRIARSAIEPQVFEWYSR----H 392

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
            +    L  T +   +A    +      +  +  + +  + K+   V  L
Sbjct: 393 KDGS--LFWTEVGIRRACLDGDVERVLVVVRDISERKETEEKLTRTVEAL 440


>gi|271499556|ref|YP_003332581.1| PAS/PAC sensor signal transduction histidine kinase [Dickeya
           dadantii Ech586]
 gi|270343111|gb|ACZ75876.1| PAS/PAC sensor signal transduction histidine kinase [Dickeya
           dadantii Ech586]
          Length = 440

 Score =  277 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 64/357 (17%), Positives = 133/357 (37%), Gaps = 33/357 (9%)

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
           +  S  E+  D + I   EG+I+  NR    L  +   +   +     L     +     
Sbjct: 99  RFRSGAESLPDAVVITTEEGVIIWCNRLAQHLLSFRWPEDNGQNILNLLRYPEFTQYM-- 156

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572
                    +Q   +    + K    +  R++           +   D+++  Q +    
Sbjct: 157 --------QQQDFSRPLTLTLKNAHHVEFRVMPY---SEGQLLMVARDVTQMHQLEG--- 202

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
                       + +F A VSHE+RTPLT + G+ E++ ++    L      +  + +  
Sbjct: 203 -----------ARRNFFANVSHELRTPLTVLQGYLEMMNDE---SLDGALQAKVLHTMQE 248

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
               +  +V  LL +S+IE+       E V +   +   +       ++ R  I      
Sbjct: 249 QTRRMDGLVRQLLTLSRIEAAAAIDLNEKVDI-PLMLRVLKREADTLSQGRHEIVFRVNE 307

Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752
            + ++  +   ++    N++ NA++ TP G +I +    T       +V D G G+    
Sbjct: 308 QL-QVFGNEEQLRSAVSNLVYNAVNHTPQGTRIEVCWQQTPQG-AQFQVSDNGPGIAAEH 365

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           L +  + F ++  ++  +  G+GLGL + K  +  +  +  I S    G+      P
Sbjct: 366 LPRLTERFYRVDKARSRQTGGSGLGLAIVKHALSHHDSRLEILSEEGTGSRFMFTLP 422


>gi|229528414|ref|ZP_04417805.1| sensor protein TorS [Vibrio cholerae 12129(1)]
 gi|229334776|gb|EEO00262.1| sensor protein TorS [Vibrio cholerae 12129(1)]
          Length = 984

 Score =  277 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 71/238 (29%), Positives = 117/238 (49%), Gaps = 8/238 (3%)

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
           ++ AE+ S  KS FLA +SHEIRTP+  ++G + ++++             Y   I+RSG
Sbjct: 460 RQQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLQDTTLTST----QQHYVQVINRSG 515

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
             +L I+ND+LD SKIE+G + +H     L   V E   L+Q  A EK I +      ++
Sbjct: 516 RSLLAILNDVLDYSKIEAGHLEIHHTHFDLYRLVRETHELMQSRAREKGITLTYHIDEDV 575

Query: 695 PRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-VILRVRDTGVGMTNYE 752
            +    D   + Q+  N++ N I FT  G ++ I      + + +   V D+G+G+   E
Sbjct: 576 TQYWQGDEIRIGQVLNNLVGNGIKFTEQG-EVRIRIRLAPDGQGIRFAVEDSGIGIAEEE 634

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
                  F Q    +  +  GTGLGL +++ +V A  G+  + S   +G+      PL
Sbjct: 635 QATLFDAFTQADAGR-RKLGGTGLGLAISRKLVQAMGGELQLASQLGQGSCFWFTLPL 691


>gi|209525055|ref|ZP_03273599.1| integral membrane sensor signal transduction histidine kinase
           [Arthrospira maxima CS-328]
 gi|209494464|gb|EDZ94775.1| integral membrane sensor signal transduction histidine kinase
           [Arthrospira maxima CS-328]
          Length = 573

 Score =  277 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 80/271 (29%), Positives = 136/271 (50%), Gaps = 22/271 (8%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I    Q   +L  AK  AE  +  KS FLA +SHE+RTPL AIIG+SE++  +    LG 
Sbjct: 299 IKRVAQYTEELQKAKIAAEAANRSKSVFLANMSHELRTPLNAIIGYSEMLHEESKD-LGY 357

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
             ++     I  +G  +LD+++D+LDISKIE+G + L+ E  ++ + + + ++       
Sbjct: 358 DDFLPDLERIQTAGKHLLDMISDILDISKIEAGHVTLYLEDFAVQQLIDDVVATATPLTE 417

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN------ 734
           +    ++   A ++  + ADL  V+Q+ LN+LSNA  FT  G  I +     +       
Sbjct: 418 KNHNALKVKTAKDLGTMYADLPKVRQVLLNLLSNASKFTNKG-TITLQVQRVTKIPNEWK 476

Query: 735 --------------EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
                         + ++ +V+DTG+GM   +++   K F Q   S   R  GTGLGL +
Sbjct: 477 KDTLNAEKFASAKTQYLVFQVKDTGIGMNKEQVKHIFKAFIQADASTTKRFGGTGLGLAI 536

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
           ++ + +   G  Y+ S    G+   +  P++
Sbjct: 537 SQRLCEILGGGIYVKSREGVGSTFVVWLPVH 567


>gi|229917024|ref|YP_002885670.1| histidine kinase [Exiguobacterium sp. AT1b]
 gi|229468453|gb|ACQ70225.1| histidine kinase [Exiguobacterium sp. AT1b]
          Length = 651

 Score =  277 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 82/382 (21%), Positives = 157/382 (41%), Gaps = 28/382 (7%)

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
              R  + ++E+E  +   IL    D I     E      N A+  L+ +P+    R   
Sbjct: 283 TSLRSQQDQVELEREKTARILHTMRDSIVYTELETNERFVNSALFDLYEHPLPSTERGSL 342

Query: 498 TVF-----LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE-KLLSLRIIIKKLPFS 551
                   +  N                     ++    + +E  K + +      L   
Sbjct: 343 YPIAMYYPMFMNQIDDPEELNQFTKRAKEEGIFDETYTYTMQEGQKTIRMYAEPIDLQNE 402

Query: 552 S-CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
                    DI++                + +  K++ +A VSHE+RTPLT+I+GFSE++
Sbjct: 403 RVGVIFVSRDITQ--------------ETEINRLKTELVATVSHELRTPLTSILGFSELL 448

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
           K+++       R   Y + I      +  +V+DLLD+ K+E+G     F+  SL + +S+
Sbjct: 449 KSRQLENTKRER---YLDMIASETKRLERLVSDLLDVQKMEAGMSVPDFKVESLYDLLSD 505

Query: 671 AISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
            + +                  ++  +  D   ++Q+  NIL+NAI ++P GG + +  T
Sbjct: 506 LLEIHAGSTEHH--FFHFDCDESL-FVAGDPAQLRQVFSNILNNAIKYSPRGGNVTVDVT 562

Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
              +  + + + D G+G++  +  +    F +  + +  R  GTGLGL + K +V  + G
Sbjct: 563 CEDD-TIQIGITDEGLGLSEEDAARIFDKFYRSASEESKRIGGTGLGLAICKEIVQLHGG 621

Query: 791 KFYIFSTPAKGTLIEIIFPLYD 812
              + S   +GT + +  P+ D
Sbjct: 622 TISVQSQLGEGTTMIVELPMVD 643


>gi|192288750|ref|YP_001989355.1| integral membrane sensor hybrid histidine kinase [Rhodopseudomonas
           palustris TIE-1]
 gi|192282499|gb|ACE98879.1| integral membrane sensor hybrid histidine kinase [Rhodopseudomonas
           palustris TIE-1]
          Length = 636

 Score =  277 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 74/248 (29%), Positives = 118/248 (47%), Gaps = 5/248 (2%)

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
             L  A++ A+  +  KS  LA  SHEIRTPL  IIG S ++ +             YA 
Sbjct: 107 RALIAARESADAANHAKSRLLAMASHEIRTPLNGIIGMSRLLLDTPLSA----EQATYAK 162

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            +  SG  +L + ++LLD ++IE+GK+ L   P  L   + + I L+   A  + + I  
Sbjct: 163 AVKTSGEALLALTDELLDYARIEAGKIELDCRPFVLSSLIEDIIELLAPRAQARGLEIAA 222

Query: 689 SFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747
                +P  ++ D   ++Q+ LN+  NAI FT +GG  +I      ++ + + VRDTG+G
Sbjct: 223 DIDERLPVSLIGDAARLRQVLLNLCGNAIKFTETGGVALIVERGDQSDGLRIIVRDTGIG 282

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           +      +    F Q          GTGLGL ++  +V    G+  + S P +G+   I 
Sbjct: 283 IAPDAQARIFHEFEQADAGIARNFGGTGLGLSISDRIVSVMGGRIALESKPGEGSTFTIT 342

Query: 808 FPLYDTSH 815
            PL    H
Sbjct: 343 LPLSAADH 350


>gi|157161843|ref|YP_001459161.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Escherichia coli HS]
 gi|157067523|gb|ABV06778.1| sensor histidine kinase/response regulator EvgS [Escherichia coli
           HS]
          Length = 1197

 Score =  277 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 91/419 (21%), Positives = 164/419 (39%), Gaps = 12/419 (2%)

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
            W+  +                  +    +       ++ +  +E ++    ++ ++  +
Sbjct: 528 TWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISFRKALSDSLPN 587

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--NTPSVMNHYLTEILSLDL 521
              ++N +G ++S N A    F          P         +  S  +    E      
Sbjct: 588 PTYVVNWQGNVISHNSAFEHYFTVDYYKNAMLPLENSDSPFKDVFSNAHEVTAETKENRT 647

Query: 522 RQTLEKIT-LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
             T       G  K        +       ++ Y     DI+E +   N L   K  A K
Sbjct: 648 IYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLINALEVEKNKAIK 707

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            +  KS FLA +SHEIRTP+++I+GF E++       L   + +E  +    +G  +L +
Sbjct: 708 ATVAKSQFLATMSHEIRTPISSIMGFLELLS---GSGLSKEQRVEAISLAYATGQSLLGL 764

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILA 699
           + ++LD+ KIESG   L  + V +   V          A  K I +  S        +  
Sbjct: 765 IGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPEHYLVKI 824

Query: 700 DLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMTNYELEKA 756
           D ++ KQ+  N+LSNA+ FT  G  +I  S  H  +   ++   + D+G G++  E ++ 
Sbjct: 825 DPQAFKQVLSNLLSNALKFTTEGAVKITTSLGHIDDNHAVIKMTIMDSGSGLSQEEQQQL 884

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            K + Q   S   +  G+GLGL + K ++    G   + S P  GT   I  P+  +  
Sbjct: 885 FKRYSQT--SAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVEISQQ 941


>gi|332518960|ref|ZP_08395427.1| ATP-binding region ATPase domain protein [Lacinutrix algicola
            5H-3-7-4]
 gi|332044808|gb|EGI81001.1| ATP-binding region ATPase domain protein [Lacinutrix algicola
            5H-3-7-4]
          Length = 1474

 Score =  277 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 81/400 (20%), Positives = 177/400 (44%), Gaps = 20/400 (5%)

Query: 430  QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYP 488
              G   +  + +  +  +     +L  +   T  G   ++   G  LS +  + ++F   
Sbjct: 948  FAGTISDFTELKKKEEDLIKSKYELDRVQSITHVGSWTMDIATGN-LSWSDELFRIFKLD 1006

Query: 489  VEDI--LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI-II 545
                    +         +   ++  + + +       LE   + +  +   +  +   +
Sbjct: 1007 TNQQPPNYEIHKNLFTNESWEKLSKAVDKAIKKGKPYELELNMIKANGDHGWMWAKGEAV 1066

Query: 546  KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAE---KESSHKSDFLARVSHEIRTPLTA 602
             +         +  DI+  K+ +  L  AKK AE     + HK+ FLA +SHEIRTP+++
Sbjct: 1067 IEKGKIVKLRGSAQDITTIKENEKALIIAKKQAEDAVLANKHKNFFLANMSHEIRTPISS 1126

Query: 603  IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
            ++GF++++   R   L   + + Y   ID +   +L++++D++D+SKIES ++ + ++  
Sbjct: 1127 VLGFADLL---RSDDLTKDKKLRYIEIIDNNSKQLLNLIDDIIDVSKIESDELKIVYKDC 1183

Query: 663  SLDEAVSE---AISLVQLYANEKRILIRTSFANNI--PRILADLRSVKQIALNILSNAIH 717
            ++ + +         +++   +  + +     +N+    I  D R ++Q+  N+++N+I 
Sbjct: 1184 NVAQLIENLTLTFEQIKVQKEKTHLKLEAIIPSNLRNLNISTDPRRLEQVLSNLINNSIK 1243

Query: 718  FTPSGGQIIISTTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
            F+  G    IS     N   +   V+D G+G+   + ++  + F Q+      +  GTGL
Sbjct: 1244 FSDKG---TISYGFQKNENYLTFFVKDEGIGIAKCKQKEIFERFKQVNYKDSAKYGGTGL 1300

Query: 777  GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
            GL + KA+V    G   + S   KGT  +   P+   ++P
Sbjct: 1301 GLSICKAIVTLLGGDITVESKRYKGTTFKFNIPIKTITNP 1340



 Score = 42.3 bits (98), Expect = 0.36,   Method: Composition-based stats.
 Identities = 42/320 (13%), Positives = 97/320 (30%), Gaps = 31/320 (9%)

Query: 276 HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP----I 331
            + N       +   +     +   E L   N        +   NL+ + ++        
Sbjct: 671 QSSNEELMAANEELQSTNEELQSVNEELYTVNSEMQEKNKELT-NLSNDVINLLNNTEIA 729

Query: 332 PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR 391
             F+ S   +    P+   + K +  D        ++  +    S   +        +  
Sbjct: 730 TLFLDSDLRIRKFTPAIKNIFKLQDEDIGRKLSNFTSNFNTKTTSKIISDS----KHALN 785

Query: 392 TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV 451
             I    +L   +    N       PF  +N+  +              +  + ++E   
Sbjct: 786 KLITIENQL---RDKDGNYYFQRISPFITSNKVID--GVVITIDNINKIKEIELELEEVD 840

Query: 452 MQLCSILEATSDGIA----IINREGI-----ILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            +   + +  ++G      I N+ G       +  N A +K+    ++DI+ K  +  + 
Sbjct: 841 YKYHKLFQNLNEGFIHAKIITNKNGEAVDWEYIDVNPAYAKILNLEIKDIIGKKVSKVVP 900

Query: 503 --QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
                P+       E       QT+E       K      +       P    ++ T+ D
Sbjct: 901 SLIKDPNQWIQKYGETALKGKNQTIEGYVEAINK---YFYVN---TFCPKKGEFAGTISD 954

Query: 561 ISEWKQEKNKLSHAKKIAEK 580
            +E K+++  L  +K   ++
Sbjct: 955 FTELKKKEEDLIKSKYELDR 974


>gi|307726047|ref|YP_003909260.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1003]
 gi|307586572|gb|ADN59969.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1003]
          Length = 817

 Score =  277 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 75/493 (15%), Positives = 169/493 (34%), Gaps = 39/493 (7%)

Query: 337 SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA 396
             G +   NP    +  ++  + +     L  L  A + +       +   R +      
Sbjct: 32  EDGRIRSWNPGGEAIHGFREDEILGKP--LDVLYTAEERAQGVPQTALATARREGR---F 86

Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
            +    ++ + +     + +     +     +    I  +  D +     +     +   
Sbjct: 87  ESEGWRLRKDGK-VFWASAVLTALTSPEGVLLGFGEIVRDMTDKKTVHDAVLESERRFRL 145

Query: 457 ILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           +++  +D  I +++ EG + + N    ++ GY   +I+   F+ F      +        
Sbjct: 146 LVDGVTDYAIFMLSPEGRVTNWNSGARRIKGYAASEIIGSHFSRFYTPEDAAKGLPQ-RG 204

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLS 572
           + +       E       K+       ++I  +        ++    DI+E  +    L 
Sbjct: 205 LTAAARDGRFESEGWRVRKDGSKFWAHVVIDAIREGGTLVGFAKITRDINEKMEATRLLE 264

Query: 573 HAKKIAEKES--SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
             +    +             V+H+    +  + G  E+++++      +    E  +  
Sbjct: 265 ETRVALVQSQKMEAIGKLTGGVAHDFNNVMQILRGNLELLESRH---KRDGWTRERLDKA 321

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
             +      + + LL   +    +  L    ++L  A+     L++  A  + + I T  
Sbjct: 322 IDAVERGAKLASQLLAFGR----QQPLRPLVINLASAIRGMDDLLR-RALGETVQIETVV 376

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT--------------HTSNEE 736
           A  +     D+  ++ + LN+  NA      GG++ +  +                  + 
Sbjct: 377 AGGLWNTFVDVHQMENVVLNLAINARDAMNEGGKLTMEVSNAMLDDQYVVGFPDVPPGQY 436

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           V+L V DTG GM    +++A  PF          G+GTGLGL +A   V  + G   I+S
Sbjct: 437 VMLAVTDTGTGMPPEVVQRAFDPFFTTKP----EGQGTGLGLSMAYGFVKQSGGHIRIYS 492

Query: 797 TPAKGTLIEIIFP 809
               GT ++I  P
Sbjct: 493 EVGHGTTVKIYLP 505



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 46/125 (36%), Gaps = 6/125 (4%)

Query: 458 LEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           +++  D  +  ++ +G I S N     + G+  ++IL KP  V       +      T +
Sbjct: 19  VQSLRDYAVIGLSEDGRIRSWNPGGEAIHGFREDEILGKPLDVLYTAEERAQGVPQ-TAL 77

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLS 572
            +       E       K+ K+     ++  L       L     + D+++ K   + + 
Sbjct: 78  ATARREGRFESEGWRLRKDGKVFWASAVLTALTSPEGVLLGFGEIVRDMTDKKTVHDAVL 137

Query: 573 HAKKI 577
            +++ 
Sbjct: 138 ESERR 142



 Score = 55.0 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/316 (9%), Positives = 81/316 (25%), Gaps = 13/316 (4%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR-QNTWYGKTTLW 150
            G ++  +       G    +++G  L DV               L   +     ++  W
Sbjct: 33  DGRIRSWNPGGEAIHGFREDEILGKPL-DVLYTAEERAQGVPQTALATARREGRFESEGW 91

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
            +               + S      GF    IV                +++F  L + 
Sbjct: 92  RLRKDGKVFWASAVLTALTSPEGVLLGFGE--IVRDMTDKKTVHDAVLESERRFRLLVDG 149

Query: 211 KKGHS-SVEKEKYDIFSQQSPPPHLR--MKNKVSS--LTEYYAHKDDVLKTEKYPLLTSE 265
              ++  +   +  + +  S    ++    +++     + +Y  +D      +  L  + 
Sbjct: 150 VTDYAIFMLSPEGRVTNWNSGARRIKGYAASEIIGSHFSRFYTPEDAAKGLPQRGLTAAA 209

Query: 266 ESSLPEQEDFH-TINLNQYTKKQYFGTLQN-NSKESFEYLSHRNHPSLSAYFDEGENLTP 323
                E E +    + +++        ++   +   F  ++   +  + A     E    
Sbjct: 210 RDGRFESEGWRVRKDGSKFWAHVVIDAIREGGTLVGFAKITRDINEKMEATRLLEETRVA 269

Query: 324 ETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIA--GGLSTLLDAPKLSDNNAI 381
               +        + G     N    +L     + +      G     LD    +     
Sbjct: 270 LVQSQKMEAIGKLTGGVAHDFNNVMQILRGNLELLESRHKRDGWTRERLDKAIDAVERGA 329

Query: 382 KPVMLYRSDRTCIAAS 397
           K      +        
Sbjct: 330 KLASQLLAFGRQQPLR 345



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/247 (8%), Positives = 57/247 (23%), Gaps = 16/247 (6%)

Query: 68  LDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI 127
           L+SE  F       T    + +   G +   +    +  G  A ++IG            
Sbjct: 137 LESERRFRLLVDGVTDYAIFMLSPEGRVTNWNSGARRIKGYAASEIIGSHFSRFYTPEDA 196

Query: 128 D---PNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIV 184
               P   +     R   +  +      +G+  +  + + A+          GF    I 
Sbjct: 197 AKGLPQRGLTAA-ARDGRFESEGWRVRKDGSKFWAHVVIDAI---REGGTLVGFAK--IT 250

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYD-------IFSQQSPPPHLRMK 237
                  +   L +          +++          +D       +            +
Sbjct: 251 RDINEKMEATRLLEETRVALVQSQKMEAIGKLTGGVAHDFNNVMQILRGNLELLESRHKR 310

Query: 238 NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297
           +  +      A        +    L +     P +     +                 + 
Sbjct: 311 DGWTRERLDKAIDAVERGAKLASQLLAFGRQQPLRPLVINLASAIRGMDDLLRRALGETV 370

Query: 298 ESFEYLS 304
           +    ++
Sbjct: 371 QIETVVA 377


>gi|148509171|gb|ABQ81808.1| GacS [Pseudomonas alkylphenolia]
          Length = 917

 Score =  277 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 76/243 (31%), Positives = 141/243 (58%), Gaps = 8/243 (3%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  A+K A + S  KS+FLA +SHEIRTPL  I+GF+ +++     P    R ++Y   
Sbjct: 270 ELDMARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSELTP----RQLDYLGT 325

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I++S + +L I+N++LD SKIE+GK+ L   P +L + + + ++++   A+ K++ + + 
Sbjct: 326 IEKSASSLLGIINEILDFSKIEAGKLVLDSIPFNLRDLIQDTLTILAPAAHAKQLELVSL 385

Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EVILRVRDTG 745
              + P  ++ D   +KQI  N++SNAI FT  G  +  +     +    ++ + V+DTG
Sbjct: 386 VYRDTPLSLVGDPLRLKQILTNLVSNAIKFTREGTIVTRAMLEEEHGDSVQLRICVQDTG 445

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+++ ++    + F Q  NS   +  GTGLGL ++K +++   G+  + STP +G+   
Sbjct: 446 IGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSQFW 505

Query: 806 IIF 808
           +  
Sbjct: 506 VSL 508


>gi|328470474|gb|EGF41385.1| sensor protein TorS [Vibrio parahaemolyticus 10329]
          Length = 988

 Score =  277 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 75/242 (30%), Positives = 124/242 (51%), Gaps = 7/242 (2%)

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
           +  AE+ S  KS FLA +SHEIRTP+  ++G + ++ +    P+       YA  I+RSG
Sbjct: 460 RNEAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLMDSGLNPI----QKRYAEIINRSG 515

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
             +L I+ND+LD SKIE+G + +      L + V +   L+   A EK++L      +++
Sbjct: 516 KTLLAILNDVLDYSKIEAGHLEIRRLGFDLHQMVEDTFQLMNSRAQEKQLLFSYHIESDV 575

Query: 695 PRIL-ADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVILRVRDTGVGMTNYE 752
            R    D+  + Q+  N++ NAI FT  G   I +S       +V+  V DTG+G++  +
Sbjct: 576 SRYWKGDVTRISQVLNNLVGNAIKFTEDGEIDIYVSLNPEDESQVLFEVSDTGIGISKKD 635

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
            +     F Q       +  GTGLGL ++K +V+A  G   + S   +G+      PL +
Sbjct: 636 QKTLFDAFTQAEGGLN-QIGGTGLGLAISKRIVEAMGGVLEVDSEEGEGSRFWFSIPLEE 694

Query: 813 TS 814
           + 
Sbjct: 695 SE 696


>gi|163802440|ref|ZP_02196333.1| histidine protein kinase PhoR [Vibrio sp. AND4]
 gi|159173741|gb|EDP58556.1| histidine protein kinase PhoR [Vibrio sp. AND4]
          Length = 433

 Score =  277 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 75/417 (17%), Positives = 159/417 (38%), Gaps = 36/417 (8%)

Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
            +    RL    W+ +            +         NG+       R  ++++   + 
Sbjct: 46  HLHYQVRLSAWLWDEKR-------LTPPSGSGNWESLFNGLYRLQQRQRRKRKELTNLIR 98

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
           +  +  E+  D + +    G I+  N+    L G+   +   +P +  +         + 
Sbjct: 99  RFRNGAESLPDAVVVFRAGGNIVWCNKLAQHLLGFHWPEDSGQPISNLIRTPDFIKYINK 158

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572
                 L++R  L    +          L + I        + + + D+S+ KQ +    
Sbjct: 159 RDFSEPLEMRSPLNVERM----------LELRIVPYTEGE-HLMVVRDVSQLKQLEG--- 204

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
                       + +F A VSHE+RTP+T + G+ E+   +    +  P + +    +  
Sbjct: 205 -----------MRRNFFANVSHELRTPMTVLQGYLEM--TEDPDMIVGPMWTKAHGVMTE 251

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
             N +  +VN LL +SKIE+  M+   + V++   +          + + +  ++    +
Sbjct: 252 QLNRMNSLVNQLLTLSKIEAAPMHELEDVVNVPSMLEVLEKEAVSLSGDDKHHLQFDVDS 311

Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752
           ++ R+L D   ++    N++ NA+ +TP G  I +    T      L V D+G G+    
Sbjct: 312 SL-RVLGDDDQLRSAISNLVYNAVKYTPPGAHINVRWYQTVQG-ARLEVNDSGDGIEPQH 369

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           L +  + F ++  ++     G+GLGL + K  +  +     I S    G+    + P
Sbjct: 370 LHRLTERFYRVDKARSRDTGGSGLGLAIVKHALSHHDSHLDIHSEVGVGSQFSFVLP 426


>gi|13470769|ref|NP_102338.1| histidine kinase sensor protein [Mesorhizobium loti MAFF303099]
 gi|14021512|dbj|BAB48124.1| histidine kinase sensor protein [Mesorhizobium loti MAFF303099]
          Length = 506

 Score =  277 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 100/253 (39%), Positives = 155/253 (61%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I+E +  K+    A++ AE  +  KS FLA +SHE+RTPL AI+GFSEV+ N+  GP+ N
Sbjct: 237 IAELETAKSMSDEARRRAEDANLAKSRFLASMSHELRTPLNAILGFSEVMANEVLGPMSN 296

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
           P Y +YA+ +  SG  +LD++N++LD+S+IE+G+  L+ EPV L   V +   +++L A 
Sbjct: 297 PTYRDYAHDVHDSGQHLLDLINEILDLSRIEAGRYQLNEEPVMLLNIVEDCCHMMELKAR 356

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
            K I +   F   +PR+ AD R+V+QI LN+LSNAI FT +GG+I +    T+     + 
Sbjct: 357 NKDIRVVQDFEQTLPRLFADERAVRQITLNLLSNAIKFTATGGEIRVRVGWTAGGGQYIS 416

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V+D G G+   E+   +  FGQ   + +   +GTGLGLP+ + ++  + G+F + S   +
Sbjct: 417 VKDNGPGIPEDEIPVVLSAFGQGSIAIKSAEQGTGLGLPIVQGLLAMHGGEFELHSKLRE 476

Query: 801 GTLIEIIFPLYDT 813
           GT    IFPL   
Sbjct: 477 GTEAIAIFPLSRV 489


>gi|229591212|ref|YP_002873331.1| hybrid sensory histidine kinase in two-component regulatory system
           with UvrY [Pseudomonas fluorescens SBW25]
 gi|229363078|emb|CAY50066.1| hybrid sensory histidine kinase in two-component regulatory system
           with UvrY [Pseudomonas fluorescens SBW25]
          Length = 917

 Score =  277 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 78/243 (32%), Positives = 142/243 (58%), Gaps = 8/243 (3%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  A+K A + S  KS+FLA +SHEIRTPL  I+GF+ +++     P    R ++Y   
Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSELTP----RQLDYLGT 325

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I++S + +L I+N++LD SKIE+GK+ L   P +L + + + ++++   A+ K++ + + 
Sbjct: 326 IEKSADNLLGIINEILDFSKIEAGKLVLDSIPFNLRDLLQDTLTILAPAAHAKQLELVSL 385

Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQI---IISTTHTSNEEVILRVRDTG 745
              + P  ++ D   +KQI  N++SNAI FT  G  +   +I      + ++ + V+DTG
Sbjct: 386 VYRDTPLALVGDPLRLKQILTNLISNAIKFTREGTIVARAMIEDEQEDSVQLRISVQDTG 445

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+++ ++    + F Q  NS   +  GTGLGL ++K +++   G+  + STP +G+   
Sbjct: 446 IGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFW 505

Query: 806 IIF 808
           I  
Sbjct: 506 ISL 508


>gi|312884259|ref|ZP_07743968.1| phosphate regulon sensor protein [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309368032|gb|EFP95575.1| phosphate regulon sensor protein [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 433

 Score =  277 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 71/402 (17%), Positives = 153/402 (38%), Gaps = 30/402 (7%)

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI-NKRKMEIEVMQLCSILEATSDGIAI 467
           ++           +     +            +   ++++   + +  +  E+  D + +
Sbjct: 54  SAWLWDEKRLTPPSGSGHWLSLFDGLYRLQQRQRNKRKELTNLIRRFRNGAESLPDAVVV 113

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
              EG I+  N+    L G+   D   +P +  +         +       L++R     
Sbjct: 114 FRGEGNIVWCNKLAQHLLGFKWPDDSGQPISNLIRTPDFIKYLNKKDFSEPLEMRSPFNI 173

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
             +          L + I        + + + D+S+ KQ +                + +
Sbjct: 174 ERI----------LELRIVPYTEGE-HLMVVRDVSQLKQLEG--------------MRRN 208

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           F A VSHE+RTP+T + G+ E+   +    +  P + +    +    N +  +VN LL +
Sbjct: 209 FFANVSHELRTPMTVLQGYLEM--TEDPDLVVGPMWSKAHGVMTEQLNRMNSLVNQLLTL 266

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707
           SKIE+  M+   + V++   +          +   +  +      ++ R+L D   ++  
Sbjct: 267 SKIEAAPMHELEDVVNVPAMLEVLEKEAVSLSGANKHQLIFDVDESL-RVLGDDDQLRSA 325

Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
             N++ NA+ +T SG +I +    +S     L V D+G G+    L +  + F ++  ++
Sbjct: 326 ISNLVYNAVKYTSSGARICVRWYASSQG-AHLEVEDSGEGIEAQHLHRLTERFYRVDRAR 384

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
                G+GLGL + K  +  +  +  I S    G+    I P
Sbjct: 385 SRDTGGSGLGLAIVKHALSHHDSRLQIHSEVGVGSKFSFILP 426


>gi|294777096|ref|ZP_06742553.1| sensor histidine kinase/response regulator [Bacteroides vulgatus
           PC510]
 gi|319643455|ref|ZP_07998078.1| sensor protein [Bacteroides sp. 3_1_40A]
 gi|294448965|gb|EFG17508.1| sensor histidine kinase/response regulator [Bacteroides vulgatus
           PC510]
 gi|317384860|gb|EFV65816.1| sensor protein [Bacteroides sp. 3_1_40A]
          Length = 1045

 Score =  277 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 92/417 (22%), Positives = 165/417 (39%), Gaps = 36/417 (8%)

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE---------ATSD 463
           +        N   E    +    +  +    ++ +     +L   LE            D
Sbjct: 500 VNTFYDVVLNCSTEPDTVDVFCMDSTELHNAQQMLSATNHKLSMALEVANIVPWKWNLKD 559

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ---NTPSVMNHYLTEILSLD 520
              + +    I     A++ + G   ED L      +  +        +     ++    
Sbjct: 560 HTILCDLNRPI-----AMAAMPGSISEDQLSVSDEQYFAKIIKEDRPRVIQAYRDLADGK 614

Query: 521 LRQTLEKITLGSTKEEKLLSLRII----IKKLPFSSCYSLTMHD----ISEWKQEKNKLS 572
           + +  E        +     +  I      +    +   LT+      I+E K+ +++L 
Sbjct: 615 IEKVKE-EYRVLANDGTQWKIDWIEAQAAVESKDENGMPLTLVGSSLVITERKKMEDELL 673

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
            AK  AE+ +  KS FLA +SHEIRTPL AIIGFS ++              EY N I+ 
Sbjct: 674 SAKDRAEESNRLKSAFLANMSHEIRTPLNAIIGFSNILAAAEEEQE----KQEYINIIES 729

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
           +  L+L +++D+LD+SKIE+G +   +  V L++ +SE  S+ +       I +      
Sbjct: 730 NNTLLLQLISDILDLSKIEAGTLEFCYSNVELNDIISEIESVTRYRTESNGIQLIVQKGL 789

Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752
               I  +   + Q+  N+L+NA  FT  G  I          E+   V+DTG G+   +
Sbjct: 790 PSCLIRTEKNRLMQVLNNLLNNASKFTSQGS-ITFGYKLCDK-ELYFYVKDTGCGIPADK 847

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +      F ++ +      +GTGLGL + + +V+   G+  + S   KG+      P
Sbjct: 848 VNSIFGRFVKLNSF----VQGTGLGLSICQTIVEHMGGRIGVESEEGKGSTFWFTIP 900


>gi|290956999|ref|YP_003488181.1| sensory histidine kinase [Streptomyces scabiei 87.22]
 gi|260646525|emb|CBG69622.1| putative sensory histidine kinase [Streptomyces scabiei 87.22]
          Length = 1793

 Score =  277 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 70/283 (24%), Positives = 137/283 (48%), Gaps = 26/283 (9%)

Query: 559  HDI----SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
             DI    +E ++ +  L    +       +KS+FLA +SHE+RTPL +++  ++++ +  
Sbjct: 1299 RDIEVKNTEIEEARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNA 1358

Query: 615  FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
               L  P+ +E+A  I  +G+ +L ++ND+LD+SK+E+GKM++    ++L + V    + 
Sbjct: 1359 ESNLT-PKQVEFAETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVDYVEAT 1417

Query: 675  VQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIII------ 727
             +    EK +      +  +P  +  D + + Q+  N+LSNA+ FT SG   ++      
Sbjct: 1418 FRPLTAEKGLDFSVRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDSGAVELVIRPAGA 1477

Query: 728  --------------STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
                          S      + +   V DTG+G+   ++    + F Q   +   +  G
Sbjct: 1478 DVPVAIKEQLLEAGSLRDADADMIAFSVTDTGIGIAASKMRVIFEAFKQADGTTSRKYGG 1537

Query: 774  TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
            TGLGL +++ +     G+ +  S P +G+   +  PL+ +  P
Sbjct: 1538 TGLGLSISREIARLLGGEIHAQSEPGRGSTFTLYLPLHPSELP 1580


>gi|310822048|ref|YP_003954406.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309395120|gb|ADO72579.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 1097

 Score =  277 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 107/553 (19%), Positives = 197/553 (35%), Gaps = 43/553 (7%)

Query: 283 YTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLF 342
             ++     L+   +              SA          + V         Y  G   
Sbjct: 109 QLRRDKERLLRQLHQRVEALFVLYEVSRASASDPPSYEAIIDRVLSAVARVLPYDCGAAL 168

Query: 343 YA----NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398
            A      + L L    +V +  + G   ++L A + S    +    L       I+  A
Sbjct: 169 IAPDDSRSAILRLRCLGTVGEKALLGVKESMLGAYRRSSGQLLPEDRLTTRVTGTISQDA 228

Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI- 457
               +  ++     +                Q   E + V       +    +  L ++ 
Sbjct: 229 SAPAVYPSQLTVSLVAGGRPVGMLSLFSQRLQAFTEDDGVLLDTLANQTADAIQSLRAVE 288

Query: 458 ----------LEATSDGIAIINREGIILSTNRAVSKLFGYPVE--DILRKPFTVFLEQNT 505
                     +EA +DG+ + + +  I+  N A  +L     E   +  +     L    
Sbjct: 289 EEARRRIERMVEAMADGVLLTDEQNAIVVINPAARRLLRVTEEVSALTGQMLEERLGFQP 348

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
             ++  +     S       E        +  +  +      L       + + D++E K
Sbjct: 349 SELIRGW---EYSGSQMLQEEVELFDRHIQCTVTPVNDARGTLK---GVCVVLRDVTEQK 402

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
             + +              K +F++ VSHE+RTPLT+I G  +++ N   G + N +   
Sbjct: 403 MLEER--------------KDEFVSMVSHELRTPLTSISGALDLVLNFLAGDI-NEKQQR 447

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           Y      S   +  +V+DLLD++K   G++ ++FE   LDE V  A         E+R+ 
Sbjct: 448 YLFMARESTEKLNSLVDDLLDLAKFAKGRLRMNFELTYLDELVRRAAEKYGPAFQERRVK 507

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN--EEVILRVRD 743
           +  +   +  R+LAD   V Q+  N+L+NA+ FTP GG++ +    TS     V L   +
Sbjct: 508 VLMTLPQHGLRVLADPSRVNQVLNNLLTNAVKFTPEGGEVRLELKATSALPGHVALSCWN 567

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF-STPAKGT 802
           +G  +    LE+    F Q          GTGLGL + + +V+A+ G  +   ST     
Sbjct: 568 SGEPIAEESLERIFDRFEQARTPSNRTVRGTGLGLAICRHIVEAHGGHIWCEPSTEGV-- 625

Query: 803 LIEIIFPLYDTSH 815
               + P+   + 
Sbjct: 626 RFVTVMPVEPPAE 638


>gi|294054668|ref|YP_003548326.1| multi-sensor hybrid histidine kinase [Coraliomargarita akajimensis
           DSM 45221]
 gi|293614001|gb|ADE54156.1| multi-sensor hybrid histidine kinase [Coraliomargarita akajimensis
           DSM 45221]
          Length = 1009

 Score =  277 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 100/659 (15%), Positives = 215/659 (32%), Gaps = 85/659 (12%)

Query: 221 KYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDF-HTIN 279
            +  F   +P   L    +++           +        +         +       +
Sbjct: 201 GWITFENWAPTDVLLYPMELAIFPIMAWGGIRLGLRGATAGVLVLALVAAWELVPVLGAD 260

Query: 280 LNQYTKKQYFGTLQNNSKESFE---YLSHRNHPSLSAYFDEGENLTPETVDKCPI-PFFV 335
               ++      +                    +  A   + E       +  P   F +
Sbjct: 261 ARYISQSPANVWIFVAIVSITSLCLASVMTELRAREAEIADNEGRLSAFTNALPDIAFVL 320

Query: 336 YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIA 395
              G +     +F    + ++   I  A  +          D  A +   + R       
Sbjct: 321 SDRGRIE---DAFASSPEIEANHRIVNADTVRGKRLDEVFDDVTARRFESVVRDVLNSRT 377

Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE----- 450
                ++++                 +    +     +       +  ++ ++       
Sbjct: 378 LQTCEYSLESVDVGEHWFEARVSPMLSGSGVSNQVVWVAYNITRRKYYEQAIQQRDGILQ 437

Query: 451 -----------VMQLCSILEAT--SDGIA----------IINR--EG------IILS--- 476
                             +E+     G+A          + +   +G       +     
Sbjct: 438 ATALANNALLTNRDFQGAVESAIREIGVALKAERINLFEVFDPSQDGSHQYRCRVEWRDD 497

Query: 477 -------------TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
                           ++        + ++ +              +  + E L      
Sbjct: 498 AGTPALIHEGEESVTGSMEGFLPGWYQLLVDQDVIKLDSDANLEPSDCQILEALESRSLL 557

Query: 524 TLEKITLGS----------TKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH 573
           ++                 T E       +   ++  SS   L +      ++ +  L  
Sbjct: 558 SIPLRVEARLHGFLLLSACTHERVWGEAEVNALRVLASSLAGLIL-----IQENQEALQI 612

Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
           A+  A+  S  K +FLA +SHEIRTP+ AIIG++++++        +    E A+ I RS
Sbjct: 613 ARDRADAASVAKGEFLAMMSHEIRTPMNAIIGYTDLLRQTNL----DELQAEQASIIKRS 668

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693
           G  +L+++N++LD SKIES  + L    V +++ V EA+  +   + EK + I    +  
Sbjct: 669 GKALLELINNILDYSKIESRTLELETSNVDVEQVVCEALEYILPQSKEKALKIDFEISET 728

Query: 694 I-PRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHT----SNEEVILRVRDTGVG 747
           +      D   ++QI +N  +NA+ FT +G  +I +   H+        +  RV DTG G
Sbjct: 729 VNAAYWGDPHRLRQILMNFANNAVKFTDTGSIRIDVDLKHSESSPDTHALYFRVTDTGCG 788

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           +   + ++  KPF Q+ +S   +  GTGLGL ++K +++   G+ ++ S   +GT    
Sbjct: 789 IPEDKFDRLFKPFSQVDSSTTRQFGGTGLGLVISKRLIERMDGRVWVSSQVGEGTTFHF 847


>gi|268317058|ref|YP_003290777.1| Histidine kinase [Rhodothermus marinus DSM 4252]
 gi|262334592|gb|ACY48389.1| Histidine kinase [Rhodothermus marinus DSM 4252]
          Length = 919

 Score =  277 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 134/789 (16%), Positives = 266/789 (33%), Gaps = 68/789 (8%)

Query: 60  ESVSNTNYLDSENTFVFDPIPRTVRFTW---NIDAHGYL--KEISEELPKTIGNYAFKMI 114
            + + T  L  +               +   ++DA         +      +   AF  +
Sbjct: 150 PTPTPTESLLDDTALYVTLALALFSILFGTRHLDATERHEGLVAAIAFESLVKLPAFVAV 209

Query: 115 GMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT--LWPIEGTNLYVPIDLAA-LPIYSR 171
           G+    V+  L+  P +  G  L R       T            +  + L A L I   
Sbjct: 210 GLF---VTFGLYDGPADLFGRALARPEFRRLLTMEEALGPGAYGQWFWMTLLAMLAILFL 266

Query: 172 NREFSGFRGFGIVHVNRVDNDPRA-----LGKRLDKKFSHLHEIKKGHS-SVEKEKYDIF 225
            R+F       +V      +  +A     L   L   F     +    +    +   D+F
Sbjct: 267 PRQF----QVAVVENVDERHLRKAIWLFPLYLWLINLFVLPIALAGLMAFPGGQVDADMF 322

Query: 226 SQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTK 285
               P  H +    + +    ++    ++      L T   + L          L    +
Sbjct: 323 VLAIPLAHGQELLALLAFIGGFSAATSMVIVATVALSTMISNDLIMPILLRIRFLRLAQR 382

Query: 286 KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYAN 345
            +  G L    +     +   ++    A       ++   +    +  F  +     Y  
Sbjct: 383 GRLTGLLLGIRRGGIVLVLVLSYLYFHAIAHAYALVSIGLISFAAVAQFAPAMLGGMYWR 442

Query: 346 P-----------SFLLLTKYK-SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393
                       +  L+  Y   +  +  AG L              ++P  L+  +   
Sbjct: 443 RGTRAGALCGLIAGFLIWGYTLPLPSLVDAGLLPVSFTENGPWGVGWLRPYQLFGLEGFD 502

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
             + A   ++ +N    + ++    ++  +  +      +            +    V  
Sbjct: 503 PISHALFWSLLFNAGLYVGVSLFTQQRVEELLQARAFVDVFRLSGRPGEATWRGTAYVSD 562

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN--TPSVMNH 511
           L  +L                        +  G    D   +P            + +  
Sbjct: 563 LQQLL-----------------------RRFLGKKQADEALRPVLAQGGGTVTATAEVVQ 599

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK--- 568
           +   +L+  +     ++ + S  +E+ LSLR ++  L  +       H++ E K  +   
Sbjct: 600 HAERLLAGAIGSASARVLIASVVKEEPLSLREVMDILDETQQVIAYSHEL-ERKSAELER 658

Query: 569 --NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
              +L  A +  ++    K +F++ ++HE+RTPLT+I  FSE++       L   +  E+
Sbjct: 659 ATRELQAANERLKELDRLKDEFISTITHELRTPLTSIRAFSEIM--HANPNLPEAQRQEF 716

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
              I +    +  ++N +L + K+ESG + L+ EPV + E + EA+  +Q +     I +
Sbjct: 717 LGIIIKEAERLTRLINQVLTLQKLESGTVELNLEPVRMQEVIEEAVEAIQPHVQFNGITL 776

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHF-TPSGGQIIISTTHTSNEEVILRVRDTG 745
             S       +L D   + Q+ LN+LSNA+ F  P  G+I +      +  V + V D G
Sbjct: 777 TVSVPETPCYVLGDRDQLVQVLLNLLSNAVKFCNPEDGRIAVRLLVEPD-RVRVDVEDNG 835

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
            G+   +       F Q+  S   R  GTGLGL +A+ +V  + G+ ++ S P  G    
Sbjct: 836 PGIAPEDQATIFDKFRQVHTSTGRRPPGTGLGLAIAQRIVQHHHGRIWVESEPGHGATFS 895

Query: 806 IIFPLYDTS 814
              P    S
Sbjct: 896 FTLPRLPAS 904


>gi|237713937|ref|ZP_04544418.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262409155|ref|ZP_06085699.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_22]
 gi|294647480|ref|ZP_06725063.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|294806519|ref|ZP_06765359.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
 gi|229446093|gb|EEO51884.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262352902|gb|EEZ01998.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_22]
 gi|292637190|gb|EFF55625.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|294446277|gb|EFG14904.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
 gi|295085278|emb|CBK66801.1| Signal transduction histidine kinase [Bacteroides xylanisolvens
           XB1A]
          Length = 391

 Score =  277 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 97/388 (25%), Positives = 159/388 (40%), Gaps = 31/388 (7%)

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN-------------RAVSKLFGYP 488
              RK+E       ++L+     I +I+ +  +L TN             + V  L    
Sbjct: 7   RESRKLERTSHIAGAVLKNVHAFILLIDNDFKVLKTNYYQKTGTRKGTEEKRVGDLLQCR 66

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS----LRII 544
                           +  +                LE      T +   +     +   
Sbjct: 67  NALAAEGGCGTHSFCGSCPIRTAIRQAFEQRRNFTDLEATLSVVTSDNTTVECDAVISGS 126

Query: 545 IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
              L       +T+HD++  KQ +N+L  AK+ AEK    KS FLA +SHEIRTPL AI 
Sbjct: 127 YFLLNEEENMVITVHDVTRRKQAENELRLAKEKAEKADISKSAFLANMSHEIRTPLNAIT 186

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           GF+EV+              +Y   I  + +L++ +VND+LD+SKIE+G +      V +
Sbjct: 187 GFAEVL----GSANTEEEKAQYQEIIKMNADLLMQLVNDILDMSKIEAGTLEFVQTTVDV 242

Query: 665 DEAVSEAISLVQLYANE--KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
           +  +S+   L Q+  NE  + I I    + +   I  D   V Q+  N   NAI FT  G
Sbjct: 243 NLLLSDLQQLFQMRVNEAGENIQIIAEPSRSSCMIQTDRNRVAQVLSNFAGNAIKFTHEG 302

Query: 723 GQIIISTTHTSNE-EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
               I   + + + E+   V+DTG G+   +L    + F ++   +    +G GLGL ++
Sbjct: 303 S---IRIGYEARDTELYFYVKDTGAGIPAEKLPDVFERFVKLNKDK----KGAGLGLSIS 355

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           + +V    G+    S   +G+      P
Sbjct: 356 QTIVAKLGGQIGADSVEGEGSTFWFTIP 383


>gi|154147903|ref|YP_001406226.1| sensor histidine kinase/response regulator [Campylobacter hominis
           ATCC BAA-381]
 gi|153803912|gb|ABS50919.1| sensor histidine kinase/response regulator [Campylobacter hominis
           ATCC BAA-381]
          Length = 1385

 Score =  277 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 79/247 (31%), Positives = 125/247 (50%), Gaps = 10/247 (4%)

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
           + K+ AE  +  KS FLA +SHEIRTPL  +IGF+E+++N       +    +Y + I++
Sbjct: 393 YQKEAAEDANKAKSIFLANMSHEIRTPLNGVIGFTELLRNTEL----DEEQQDYVDTIEQ 448

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
           S   +L I+N++LD+SKIES K+ L     +  +    A+ +    A EK I I      
Sbjct: 449 SSENLLTIINNILDVSKIESNKVELEDILFNPIQDFESAVEIYVAKATEKNIDILLYIDP 508

Query: 693 NIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-----VILRVRDTGV 746
            +   +  D+  +K++ +N++SNA+ FTP GG I +      ++      V   V DTGV
Sbjct: 509 TLIHHLYGDITKIKEVLINLMSNAVKFTPEGGMIAVEIVRVKSDNPNEATVNFSVEDTGV 568

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+   +L      F Q  ++   +  GTGLGL ++   V    GK  + ST  KGT    
Sbjct: 569 GIAEDKLVNVFNAFSQADSTITRKYGGTGLGLTISSKYVAMMGGKLEVKSTLGKGTRFYF 628

Query: 807 IFPLYDT 813
                +T
Sbjct: 629 TLTFKET 635


>gi|121535018|ref|ZP_01666836.1| integral membrane sensor signal transduction histidine kinase
           [Thermosinus carboxydivorans Nor1]
 gi|121306431|gb|EAX47355.1| integral membrane sensor signal transduction histidine kinase
           [Thermosinus carboxydivorans Nor1]
          Length = 369

 Score =  277 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 65/266 (24%), Positives = 128/266 (48%), Gaps = 12/266 (4%)

Query: 551 SSCYSLTMHDIS---EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
                    DI+   E  +  N  +   +   + +  +   LA ++HE++TPL+ I G  
Sbjct: 109 EQGKLGHTVDINSNDEVGRLANTFNRMSRALAENNRLRKRLLADIAHELKTPLSVIQGNL 168

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
           E +              E  + +      +  I+N+L ++S  E+G++ L  +   ++  
Sbjct: 169 EGMLEGVV-----ETSPEQLHSLYEETVYLNKIINELRELSLAEAGQLTLERQLTDVNPL 223

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727
           VS A+++++  A+EK+I +  S  + +P I  D+  + Q+  N+LSNA+ +TP+ G+I  
Sbjct: 224 VSRAVNMLKPLADEKKIKLACSLQH-VPEISIDVMRINQVLYNLLSNAVRYTPANGKIEA 282

Query: 728 STT---HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
            T      S E V + +RD G G++  +L    + F +   ++  +  G+G+GL + K +
Sbjct: 283 VTAVVNLDSREYVAISIRDNGKGISADDLPHIFEHFYRADFARDRKSGGSGIGLAIVKQL 342

Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPL 810
           V+ + GK    S   KG+   +  P+
Sbjct: 343 VELHGGKVEAKSELGKGSEFTVYLPV 368


>gi|320353213|ref|YP_004194552.1| Hpt sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
           2032]
 gi|320121715|gb|ADW17261.1| Hpt sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
           2032]
          Length = 564

 Score =  277 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 79/265 (29%), Positives = 132/265 (49%), Gaps = 10/265 (3%)

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           ++   ++E  KL    + A+  +  KSDFLA +SHEIRTP+  +IG SE++ +    P  
Sbjct: 18  EVQRLERENRKLRKKARQADSANQAKSDFLAMISHEIRTPMNGVIGISELLLDTDLQP-- 75

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
             R   +A+ I  S   +L ++N+LLD SKIE+ KM L  EP  L   + + +SL ++  
Sbjct: 76  --RQKHFAHLIRTSATSLLTLINNLLDFSKIEADKMVLESEPFDLRALLEQLLSLYRVTG 133

Query: 680 NEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-- 736
             K + +      ++  + + D   ++Q+ +N+L NA+ FT  G  I++        E  
Sbjct: 134 KSKGLRVNAEIDPSLSRQYVGDAHRLRQVLVNLLGNAVKFTEQGA-ILLRVRKERAGETA 192

Query: 737 --VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
             +   V D+GVG+    ++K  +PF Q+ +S   R  GTGLGL +   ++    G+F  
Sbjct: 193 ELLRFEVEDSGVGIAEGSMDKLFQPFSQVDSSSTRRYGGTGLGLSICARLIKLMEGEFGA 252

Query: 795 FSTPAKGTLIEIIFPLYDTSHPHDC 819
            S   KG+      PL       + 
Sbjct: 253 RSEYGKGSTFWFSLPLRVARQAAEI 277


>gi|310818442|ref|YP_003950800.1| Hybrid signal transduction histidine kinase J [Stigmatella aurantiaca
            DW4/3-1]
 gi|309391514|gb|ADO68973.1| Hybrid signal transduction histidine kinase J [Stigmatella aurantiaca
            DW4/3-1]
          Length = 2483

 Score =  277 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 87/375 (23%), Positives = 158/375 (42%), Gaps = 40/375 (10%)

Query: 458  LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
            L+  ++ I ++     ++  N    +L       +  +  T  L+  +       LT+  
Sbjct: 1667 LDQLTESIGVV---LNMIIANMRTEQLL------LQSQGLTQELQSQSRE-----LTQQQ 1712

Query: 518  SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI 577
                R   E        EEK   L     ++   +                + L    + 
Sbjct: 1713 EELKRTNTELEAQALELEEKAKQLEEQNTRVEEKNAEVELAR---------SSLEEKAEQ 1763

Query: 578  AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
                S +KS+FLA +SHE+RTPL +++  ++++ + + G L   + +EYAN I  SG  +
Sbjct: 1764 LSLISKYKSEFLANMSHELRTPLNSLLILAKLLADNKDGNLSG-KQVEYANTIYASGGDL 1822

Query: 638  LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-R 696
            L ++N++LD+SK+E+GKM +    + L E         +  A +K +        N P +
Sbjct: 1823 LSLINEILDLSKVEAGKMQVEPRDIVLTELNQFVDRSFRPVAEQKNLSFDVELLANAPRQ 1882

Query: 697  ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-------------VILRVRD 743
            I  D + ++Q+  N+LSNA  FT  GG + +                      +   V D
Sbjct: 1883 IRTDPQRLQQVLKNLLSNAFKFTDEGG-VQLVVKLADKGVRFEHEVLKRAKRVIAFVVTD 1941

Query: 744  TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
            TG+G+   + +   + F Q   S   +  GTGLGL +++ +     G+ ++ ST  KG+ 
Sbjct: 1942 TGIGIAKDKQKLIFEAFQQADGSTARKYGGTGLGLSISREIAKLLGGEIHVESTLGKGST 2001

Query: 804  IEIIFPLYDTSHPHD 818
              +  P  +   P D
Sbjct: 2002 FTLFLP-PEYVAPED 2015


>gi|295699015|ref|YP_003606908.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1002]
 gi|295438228|gb|ADG17397.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1002]
          Length = 643

 Score =  277 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 83/400 (20%), Positives = 152/400 (38%), Gaps = 21/400 (5%)

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKL 484
           E           +  R  +  +     +   + E   D   +++     +L  + A  +L
Sbjct: 113 EPAELIAQVRALLRVRRAEGALRESEERFRQMAENIDDVFWMLDPSSAQLLYVSPAYRRL 172

Query: 485 FGYPVEDIL--RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
           +G          + +   ++    + +      + +       E        + +     
Sbjct: 173 WGDAAHQPTPTGRHWANHIDPQDEAAVETAYRALATG---VAYEIEYRIVRPDGETRWAV 229

Query: 543 IIIKKLPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
                +  +  +       ++DIS+ K  +  L             K +FLA ++HE+R 
Sbjct: 230 ERGFPVRDARGHIYRLAGIVNDISDRKANEMALRD-------ADRRKDEFLAMLAHELRN 282

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
           PL  I    E++            +      I R    +  +V+DLLD+++I  GK+ L 
Sbjct: 283 PLAPIRNAIELL--DPSRAPSQQSFEAMRAVIGRQVKHLSRLVDDLLDVARITQGKITLR 340

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718
            E V L  A+  AI  V+   N K   + T        ++ D   + Q+  N+LSNA  +
Sbjct: 341 HEIVELAAALEAAIETVRPALNRKGHTLTTDLPAEPLFVVGDGVRIAQVLGNVLSNAAKY 400

Query: 719 TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
           TP  G I I     + ++V++ VRD GVG+    +      F Q   S +    G G+GL
Sbjct: 401 TPQRGDIRIEVR-EAGDDVLISVRDNGVGIDAETIPHIFDLFVQSEISIERSEGGLGIGL 459

Query: 779 PLAKAMVDANMGKFYIFST-PAKGTLIEIIFPLYDTSHPH 817
           PLA+ +V+ + G    FS  P +G+   +  PL   +   
Sbjct: 460 PLARTLVELHGGGIEAFSAGPGRGSEFVVRLPLTRLADAE 499



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 25/249 (10%), Positives = 55/249 (22%), Gaps = 7/249 (2%)

Query: 87  WNIDAH-GYLKEISEELPKTIGNYA--FKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTW 143
           W +D     L  +S    +  G+ A      G    +  D             L     +
Sbjct: 153 WMLDPSSAQLLYVSPAYRRLWGDAAHQPTPTGRHWANHIDPQDEAAVETAYRALATGVAY 212

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +  +   +G            P+         +R  GIV+            +  D++
Sbjct: 213 EIEYRIVRPDGETR--WAVERGFPVRDARGHI--YRLAGIVNDISDRKANEMALRDADRR 268

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
                 +                +   P     +    ++      +   L      LL 
Sbjct: 269 KDEFLAMLAHELRNPLAPIRNAIELLDPSRAPSQQSFEAMRAVIGRQVKHLSRLVDDLLD 328

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
               +  +    H I       +    T++         L+            +G  +  
Sbjct: 329 VARITQGKITLRHEIVELAAALEAAIETVRPALNRKGHTLTTDLPAEPLFVVGDGVRIAQ 388

Query: 324 ETVDKCPIP 332
              +     
Sbjct: 389 VLGNVLSNA 397


>gi|271501843|ref|YP_003334869.1| multi-sensor hybrid histidine kinase [Dickeya dadantii Ech586]
 gi|270345398|gb|ACZ78163.1| multi-sensor hybrid histidine kinase [Dickeya dadantii Ech586]
          Length = 922

 Score =  277 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 87/332 (26%), Positives = 148/332 (44%), Gaps = 17/332 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           L  Y +   +  P    +       ++      L   +   +             +++ +
Sbjct: 190 LLAYRLMRDVTAPIRNMV-----ETVDRIRRGQLDSRVEGHMLGELDMLKNGINSMAMSL 244

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                          +D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 245 TAYHEEMQQNIDQATYDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTP 304

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+     Q           +Y   I+RS N +L+I+ND+LD SK+E+GK+ L  
Sbjct: 305 LNGVIGFT----RQTLKTQLTTTQKDYLQTIERSANNLLNIINDVLDFSKLEAGKLVLEN 360

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P SL   + E I L+   A+EK + +  +  +++P   + D   ++QI  N+L NAI F
Sbjct: 361 IPFSLHNTLDEVIMLLAHTAHEKGLELTLNIQHDVPEQFVGDPLRLQQIITNLLGNAIKF 420

Query: 719 TPSGGQ-IIISTTHTSNEEV--ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T  G   I I      N +V   ++++DTG+G+   +  +  + F Q   S   +  GTG
Sbjct: 421 TEQGNIDIRIEKRKQENLQVLLEIQIKDTGIGIAEAQQTQLFQAFRQADTSISRQHGGTG 480

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           LGL + + +V    G     S   +GT     
Sbjct: 481 LGLVITQRLVREMGGDISFHSKLNQGTTFWCT 512


>gi|218439195|ref|YP_002377524.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
 gi|218171923|gb|ACK70656.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
          Length = 935

 Score =  277 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 111/700 (15%), Positives = 229/700 (32%), Gaps = 72/700 (10%)

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFG---IVHVNRVDNDPRALGKRLDKKFSHLH 208
           I G +L + ID A  P+   N E      F    I+       D +   +  +++F  L 
Sbjct: 137 INGESLRLLIDYALKPVEPVNTELFPNHQFLQPKILAPPHPKTDEQTSQR--EQQFKTLA 194

Query: 209 EIKKGHSSVEKEKYDIFSQQSP---PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
           +      +     +              L     +          +D++   +       
Sbjct: 195 DNAPDIIARFDLNFRHLYVNRAIEQATGLPASAFIGKTNRDLGMPEDLIIQWEATFKQVL 254

Query: 266 ESSLPEQEDFHTI-NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
            +      +F         + +                L      +      E       
Sbjct: 255 ATKQQTLIEFEFPTPDGIKSYQGRCVPEIGLDGSIESLLIVTRDITEQKRATEALKQREA 314

Query: 325 TVDK------CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
           T+          +         +     +           D     G+   L   K SD 
Sbjct: 315 TLRSFFNTTPLMMGIVELIGEQISLVTCNC----------DNTDCWGICRKLMEQKCSDE 364

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
                  L  +  +          +    +  L++T      A+   +      +  +  
Sbjct: 365 PTEWYAALQSAHNSQSPVHFEYPYLTPKGKRWLSVTICWI--ADDLSKYPQFAFVAEDVT 422

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
           + + ++ K++ +     ++++  +DGI + + +  IL  ++   +L+G+  +++L K   
Sbjct: 423 ERKQSQLKIQEQ----AALIDIATDGIVLKDLDNYILFWSKGAERLYGWNKQEVLGKKED 478

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY---- 554
             L   +       L EI+      +        TKE K + +      +   S Y    
Sbjct: 479 ELLLTLSN-FYRDILDEIIFKG---SWRGELTQITKEGKPILVESRSTLVRNESGYPQSI 534

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI--KN 612
            +   DI+E KQ + ++   +++            + ++H++    T I+  S++I  K 
Sbjct: 535 LVVNTDITEKKQLEQQILQFQRL-----ESLGTLASGIAHDLNNIFTPILAISQLIPHKF 589

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
                  + +  E+   +  S     ++V  +L   +   G+      P+ +   + E +
Sbjct: 590 DNGDGKFDNQIQEWLAVLKSSAMRGSELVKQILYFVRGYEGQ----RSPLQVVHLLWEVV 645

Query: 673 SLVQLYANEKRILIRTSF-ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT- 730
           ++ +     K I I T+  A N+  I AD   + Q+ +N++ NA      GG + I    
Sbjct: 646 NIAKSSFP-KSIEIVTALRAQNLWLINADSTQIHQVLMNLIINARDAMAEGGILTIEAEN 704

Query: 731 -------------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
                              V++ V DTGVG+    LE+   PF          G+G+GLG
Sbjct: 705 FLVDQSFARMNMEAHEGPYVVMTVTDTGVGIPPQLLERIFDPFFTTK----EVGKGSGLG 760

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP--LYDTSH 815
           L     +V  + G   + S   KGT  ++ FP  +  TS 
Sbjct: 761 LATVLGIVRNHGGFIRLSSEVGKGTEFKVYFPAIIGQTSQ 800



 Score = 76.2 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/498 (7%), Positives = 108/498 (21%), Gaps = 34/498 (6%)

Query: 52  SNFTDQNQESVSNTNYLDSENTFVFDPIPRT---VRFTWNIDAHGYLKEISEELPKTIGN 108
                      ++      E  F            RF    D +     ++  + +  G 
Sbjct: 168 QPKILAPPHPKTDEQTSQREQQFKTLADNAPDIIARF----DLNFRHLYVNRAIEQATGL 223

Query: 109 YAFKMIGMRLCDVSDILHI--DPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAAL 166
            A   IG    D+     +          +L  +     +      +G   Y       +
Sbjct: 224 PASAFIGKTNRDLGMPEDLIIQWEATFKQVLATKQQTLIEFEFPTPDGIKSY---QGRCV 280

Query: 167 PIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFS 226
           P    +          +              K+ +               + +   +  S
Sbjct: 281 PEIGLDGSIESL--LIVTRDITEQKRATEALKQREATLRSFFNTTPLMMGIVELIGEQIS 338

Query: 227 QQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKK 286
             +          +          D+  +            S    E  +     +    
Sbjct: 339 LVTCNCDNTDCWGICRKLMEQKCSDEPTEWYAALQSAHNSQSPVHFEYPYLTPKGKRWLS 398

Query: 287 QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYAN 345
                + ++  +  ++       +               +D       +    N + + +
Sbjct: 399 VTICWIADDLSKYPQFAFVAEDVTERKQSQLKIQEQAALIDIATDGIVLKDLDNYILFWS 458

Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405
                L  +   + +        LL       +   + +          +    L  I  
Sbjct: 459 KGAERLYGWNKQEVLGKKED-ELLLTLSNFYRDILDEIIF-------KGSWRGELTQITK 510

Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465
             +  L +        N+         +  +  + +  ++++ ++  +L S L   + GI
Sbjct: 511 EGKPIL-VESRSTLVRNESGYPQSILVVNTDITEKKQLEQQI-LQFQRLES-LGTLASGI 567

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
           A           N   + +         +         N        L            
Sbjct: 568 A--------HDLNNIFTPILAISQLIPHKFDNGDGKFDNQIQEWLAVLKSSAMRGSELVK 619

Query: 526 EKITLGSTKEEKLLSLRI 543
           + +      E +   L++
Sbjct: 620 QILYFVRGYEGQRSPLQV 637


>gi|153211921|ref|ZP_01947768.1| sensor protein TorS [Vibrio cholerae 1587]
 gi|124116997|gb|EAY35817.1| sensor protein TorS [Vibrio cholerae 1587]
          Length = 984

 Score =  277 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 71/238 (29%), Positives = 117/238 (49%), Gaps = 8/238 (3%)

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
           ++ AE+ S  KS FLA +SHEIRTP+  ++G + ++++             Y   I+RSG
Sbjct: 460 RQQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLQDTTLTST----QQHYVQVINRSG 515

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
             +L I+ND+LD SKIE+G + +H     L   V E   L+Q  A EK I +      ++
Sbjct: 516 RSLLAILNDVLDYSKIEAGHLEIHHTHFDLYRLVRETHELMQSRAREKGITLTYHIDEDV 575

Query: 695 PRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-VILRVRDTGVGMTNYE 752
            +    D   + Q+  N++ N I FT  G ++ I      + + +   V D+G+G+   E
Sbjct: 576 TQYWQGDEIRIGQVLNNLVGNGIKFTEQG-EVRIRVRLAPDGQGIRFAVEDSGIGIAEEE 634

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
                  F Q    +  +  GTGLGL +++ +V A  G+  + S   +G+      PL
Sbjct: 635 QATLFDAFTQADAGR-RKLGGTGLGLAISRKLVQAMGGELQLASQLGQGSCFWFTLPL 691


>gi|317027783|ref|XP_001399984.2| sensor histidine kinase/response regulator [Aspergillus niger CBS
            513.88]
          Length = 2354

 Score =  277 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 74/250 (29%), Positives = 126/250 (50%), Gaps = 10/250 (4%)

Query: 565  KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
            K  + +  H  K+ E  +  KS FLA +SH++RTP+  +IG SE++K  +     +    
Sbjct: 1886 KVAEAEAKHNVKLKEDAAKAKSIFLANISHDLRTPMNGVIGLSELLKGTKL----DREQD 1941

Query: 625  EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
            EY   I    + +L ++ND+LD SK+E+GKM +   P+++ E +SE +  ++    ++ +
Sbjct: 1942 EYVESIRVCADTLLTLINDILDFSKLEAGKMKISTVPLNIRETISEVVRALRYTHRDRGL 2001

Query: 685  LIRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL-- 739
                      P   +L D   + QI +N+LSN+  FTP G   +    +      V L  
Sbjct: 2002 ETIEDLDKVPPELVVLGDPVRLHQIFMNLLSNSYKFTPKGSVTVRAKVSREGKGRVRLEC 2061

Query: 740  RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA-NMGKFYIFSTP 798
             V DTG+G++  +  +  +PF Q  NS      G+GLGL + KA+++    G  ++ ST 
Sbjct: 2062 SVSDTGIGISEEQKSRLFRPFSQADNSTARSYGGSGLGLSICKAIIEDVLGGAIWLDSTS 2121

Query: 799  AKGTLIEIIF 808
              GT +    
Sbjct: 2122 GVGTTVTFHL 2131


>gi|114048268|ref|YP_738818.1| PAS/PAC sensor signal transduction histidine kinase [Shewanella sp.
           MR-7]
 gi|113889710|gb|ABI43761.1| PAS/PAC sensor signal transduction histidine kinase [Shewanella sp.
           MR-7]
          Length = 432

 Score =  277 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 68/370 (18%), Positives = 149/370 (40%), Gaps = 33/370 (8%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           R    ++   + +     EA  D   +++ E  IL  N+    + G+       +     
Sbjct: 87  RRRVGQLAALLGRFRQGAEALPDAAVVLDSEHNILWCNKLAQLILGFVWPQDNGQRIDNL 146

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
           +     S        + + + ++ L         + +LL +RI+           L   D
Sbjct: 147 IRHPDFSAY------LKAGEYKEPL--ELASPVSDRRLLEIRIMSY---GDRQLLLIARD 195

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I+  +Q +                + +F+A VSHE++TPLT + G+ E++++       N
Sbjct: 196 ITRIRQLEG--------------MRKEFVANVSHELKTPLTVLQGYLEMMQSMAEPDSMN 241

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE-PVSLDEAVSEAISLVQLYA 679
            +       + +    +  +V  LL +S+IE   ++++ E  V++ + +       +  A
Sbjct: 242 AKP---LALMQQQTRRMQSMVEQLLVLSRIE-DAVDINLENTVNMAQLMEVLKEEAKALA 297

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
            +K   +       +     +   ++    N++SNAI +T  GG+I +     +   +  
Sbjct: 298 QDK-YELSFHCEAGLNS-HGNELQLRSACSNLISNAIRYTEPGGKITVQWRSVATGGL-F 354

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V DTG G+    + +  + F ++ +++  +  G+GLGL + K  +  +  +  I S   
Sbjct: 355 SVTDTGEGIAPQHISRLTERFYRVDSARSRQTGGSGLGLAIVKHALSHHHSELNISSELG 414

Query: 800 KGTLIEIIFP 809
           KG+    + P
Sbjct: 415 KGSTFSFVIP 424


>gi|116623351|ref|YP_825507.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116226513|gb|ABJ85222.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 794

 Score =  277 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 83/547 (15%), Positives = 190/547 (34%), Gaps = 31/547 (5%)

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
           +     E F     ++  ++Q    L+ + +    ++   +       F+   + T    
Sbjct: 152 APREILEIFAPRAADELERRQQEELLRGSEQRYRAFVEDNSDGMWRIEFEPPVSTTLNER 211

Query: 327 DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
           ++      +Y  G++   N +       +S + +            P  S       +  
Sbjct: 212 EQLE---AIYRDGHIAECNLAMARQLGAESPEHLVGMPLKD---IGPLSSPAVRNATIYA 265

Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
            R+                + +    +        N         G   +  + +  ++ 
Sbjct: 266 IRAGYRFNTVET--SPDASDGKRRYMLRTQWGIVENNL--LRRLWGSTRDITELKQFEKA 321

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
           ++    +   +L+     + I    G +   N  +S+  G+   D+  + +   +     
Sbjct: 322 LDEAEQKFSGLLQNLPLIVMIAQPSGDVEFWNDRLSRPTGWKSSDVDGRNWIDLMIPAAE 381

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDIS 562
                   +   ++  + +   +     + +   +      L  +       ++   DI+
Sbjct: 382 RARVRAALQAAVVEPPRPVHFQSPFLGPDGERRWIAWDSTSLRDAEGTTFSVAIVGCDIT 441

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E+K  + +   A+K+              ++H+    LT ++G + V+ ++     G+  
Sbjct: 442 EFKALEAQFHQAQKLEH-----IGRMTGGIAHDFNNLLTVVMGHTGVLLDK---TPGSDA 493

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
              +   I  +      +   L   S+       L  E +     +++ + +++  A + 
Sbjct: 494 ARSFLLQILGAAEKGAALTERLFTFSR----HRVLRPEILDPGGLIADDLHMIRHLAGD- 548

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           RI + +   ++   + AD   V QI LN++ NA     SGG + IST++  +  V + V 
Sbjct: 549 RINVVSHLDDSPAFVHADAGQVHQILLNLVVNARDAMQSGGTLTISTSNADSRYVQIAVA 608

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG GMT+       +PF          G+GTGLGL +   +V  + G   + + P  GT
Sbjct: 609 DTGTGMTDEVRSHLFEPFYTTKA----EGKGTGLGLSMVYGIVQQSGGHIEVDTNPGTGT 664

Query: 803 LIEIIFP 809
            I I  P
Sbjct: 665 SIRIFLP 671



 Score = 45.4 bits (106), Expect = 0.038,   Method: Composition-based stats.
 Identities = 22/242 (9%), Positives = 63/242 (26%), Gaps = 11/242 (4%)

Query: 91  AHGYLKEISEELPKTIG-NYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
             G++ E +  + + +G      ++GM L D+  +      N     ++    +   T  
Sbjct: 219 RDGHIAECNLAMARQLGAESPEHLVGMPLKDIGPLSSPAVRNATIYAIRAGYRFN--TVE 276

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
              + ++      L     +         R +G                  ++KFS L +
Sbjct: 277 TSPDASDGKRRYMLRTQ--WGIVENNLLRRLWGSTRDITELKQFEKALDEAEQKFSGLLQ 334

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPH------LRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
                  + +   D+                 +  +        A +   ++      + 
Sbjct: 335 NLPLIVMIAQPSGDVEFWNDRLSRPTGWKSSDVDGRNWIDLMIPAAERARVRAALQAAVV 394

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
                +  Q  F   +  +        +L++    +F         +     +   +   
Sbjct: 395 EPPRPVHFQSPFLGPDGERRWIAWDSTSLRDAEGTTFSVAIVGCDITEFKALEAQFHQAQ 454

Query: 324 ET 325
           + 
Sbjct: 455 KL 456


>gi|282897268|ref|ZP_06305270.1| Multi-sensor Hybrid Histidine Kinase [Raphidiopsis brookii D9]
 gi|281197920|gb|EFA72814.1| Multi-sensor Hybrid Histidine Kinase [Raphidiopsis brookii D9]
          Length = 1032

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 79/566 (13%), Positives = 201/566 (35%), Gaps = 50/566 (8%)

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
            E+         +    +    L   ++     +  + H        E E      ++  
Sbjct: 356 AEEVLTRAAEDLEQRVAKRTEELVQLNQTLKAEI--KQHQKTEIALRESETRLTLALEVA 413

Query: 330 PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL--LDAPKLSDNNAIKPVMLY 387
            +  + ++       N      +              S    L      ++  +    L 
Sbjct: 414 KMGIWDWN----LITNDYMWSESVGPMYGLPRGTISPSCYEDLLRLIHPEDAELLSNKLR 469

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
            +       +    +I W   +   +T       N+  E     G        +  ++K+
Sbjct: 470 IALDNKSGFTIEFRSI-WPDGSLHWLTSTAQVFCNEKREATRMIGTVQNISTYKQKEQKL 528

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
             +     ++L+  +D I + + +  IL  N+   +++G+  ++ + K           +
Sbjct: 529 YEQ----AALLDIATDAIFVRDFQTEILFWNQGARRIYGWTKDEAIGKYLRDLFS--QKT 582

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISE 563
            M   +  + ++    + + +     K  + +++      +  +        +   DI++
Sbjct: 583 AMKQEVIALKAVVRSGSWQGVLHKYKKSGEQVTVESRWTLMFDADGQPKSILIVDTDITD 642

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            KQ + +    +++              ++H++   LT I+G ++ +  ++   + +P+ 
Sbjct: 643 KKQLEEQFLRTQRL-----ESIGTLACGIAHDLNNILTPILGSAQ-LLKRKSDHITHPQ- 695

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
                 I+ +      +V  +   ++  S +  +    V +   + E ++L +     K 
Sbjct: 696 --LLTMIEENATRASSLVKQVFSFARGASSEWTI----VQIKHLIFEIVNLAKHTFP-KS 748

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT------------- 730
           I ++T  ANN+  +  D   + QI +N++ NA++  PSGG + I+               
Sbjct: 749 INLKTKIANNLATVFGDSTELYQIMINLVVNALNAMPSGGVLTIAAENTFIDGNNLINEK 808

Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
                 +++ + DTG+GM+    +K  +PF          G G+G+GL +   ++  + G
Sbjct: 809 LQQGHYILITIIDTGIGMSQAVADKIFEPFFTTKQ----NGLGSGIGLSIVSRIIQKHNG 864

Query: 791 KFYIFSTPAKGTLIEIIFPLYDTSHP 816
               ++   +GT  E+  P  +  HP
Sbjct: 865 HLQFYTQQGQGTKFEVFLPSIEAPHP 890



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 72/192 (37%), Gaps = 6/192 (3%)

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
           T +   E    +      +       + +  +  ++    I     E+E  +   + E T
Sbjct: 189 TQRLTEEKIEQVNIQEELQQTIEELQIIEEELRQQNQQLLIAHELAELERNRYHQLFELT 248

Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
                + ++ GII + N+  S L     + ++ KP  VF+           + +      
Sbjct: 249 PYCYLVTDKLGIIKNANQTASTLLSIEKQYLIGKPIIVFIAPKYRQQFTCQIADF--QPQ 306

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPF----SSCYSLTMHDISEWKQEKNKLSHAKKI 577
           +++ E+      ++ KL    + I  +         +   +++IS+ K+ +  L+ A + 
Sbjct: 307 QESPEQEIYLQPRKGKLFPASVKIVGIYDPHKKEHSWIWLINNISDRKKAEEVLTRAAED 366

Query: 578 AEKESSHKSDFL 589
            E+  + +++ L
Sbjct: 367 LEQRVAKRTEEL 378


>gi|188583314|ref|YP_001926759.1| multi-sensor hybrid histidine kinase [Methylobacterium populi
           BJ001]
 gi|179346812|gb|ACB82224.1| multi-sensor hybrid histidine kinase [Methylobacterium populi
           BJ001]
          Length = 1095

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 104/804 (12%), Positives = 215/804 (26%), Gaps = 102/804 (12%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL-KRQNTWYGKTT 148
                 +  +    K +G+    ++G  + +            I D +            
Sbjct: 172 GREHRFELANPRYLKLVGHR--DVVGRTVAEALPDAVEQGFLEILDQVYDSGVPQTFHGI 229

Query: 149 LWPIE----GTNLYVPIDLAALPIYSRNREFSG-FRGFGIVHVNRVDNDPRALGKRLDKK 203
            + ++    G +    +D+   PI   +    G F     V         R    R+  +
Sbjct: 230 RYAVQAVPGGPHDERFVDVVYQPIRDVDGTVGGIFIEGADVTDRARAETRREALVRITDR 289

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQS-------------------PPPHLRMKNKVSSLT 244
           F+ L        +  +   +  +                        P +     V  L 
Sbjct: 290 FNELTRADDIAFAASQVLGETLAVSRVGYGTIDPDAETLHVERDWNAPGVETLAGVVPLR 349

Query: 245 E-------------YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQY-------- 283
                               +           S+        +   +   +         
Sbjct: 350 TYGSFIDSLKRGEFVSIADVERDDRTAGAAEASKGRGAHAFVNVPVLEQGRLVAALFVNH 409

Query: 284 -----TKKQYFGTLQNNSKESFEYLSHRNHPSL--------SAYFDEGENLTPETVDKCP 330
                        ++  +  +   +      +              E       T     
Sbjct: 410 AEVRDWAPDDLAFIREVAGRTRIAVERSRVETALRDLNADLERQVAERSRELSRTWQVST 469

Query: 331 IPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389
                    G     NP++  L  +   +   I              D+       L R 
Sbjct: 470 DLLGIADDAGFFVRTNPAWKSLLGWSDAEAARIP------FVELVHPDDVRATHAALDRL 523

Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449
                                              PE         +  + R +   +  
Sbjct: 524 RAGEAVLRFENRCRTTAGGYRWLAWV-------AVPEGGQFYCSARDVTEEREHAATLAE 576

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
              +   +   + D +A  N +G + + + A +++ G+   ++L +P+  F+  +     
Sbjct: 577 RTAERDRLWNLSEDMLARANYQGTMSAVSPAWTQVLGWSEAELLSRPYATFMHPDDTDQT 636

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN 569
              L  +   D ++        +  +    S+   +   P    +     D+S  K  + 
Sbjct: 637 LAALVRM--GDTKRPTRFENRIAASDGSWKSIEWTVAPEPDGLHFIAVGRDLSVAKAREA 694

Query: 570 KLSHAKKIAEKES--SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
           +L+ A++   +             ++H+    L  I G  E +   R           Y 
Sbjct: 695 ELAAAQEALRQSQKMEAVGQLTGGLAHDFNNLLAGISGSLE-LMQTRMQQGRLSDVDRYM 753

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
                +      + + LL  S+    +  L  +P  ++  VS    L+Q       I + 
Sbjct: 754 AAAQGASKRAAALTHRLLAFSR----RQTLAPKPTDVNRLVSGMQELIQ-RTVGPAIPVE 808

Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT-------------HTSN 734
              A+ +   L D   ++   LN+  NA    P GG+I + T                  
Sbjct: 809 VVGASGLWPALVDPPQLENALLNLCINARDAMPDGGRITVETANKWLDERAARQHDMPEG 868

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
           + + L V DTG GM    + +  +PF          GEGTGLGL +       + G+  I
Sbjct: 869 QYLSLCVTDTGTGMPPDVVARVFEPFFTTKPL----GEGTGLGLSMIYGFAQQSGGQVRI 924

Query: 795 FSTPAKGTLIEIIFPLYDTSHPHD 818
           +S   +GT + +  P +      D
Sbjct: 925 YSEVGRGTTVCVYLPRHYGEIAED 948



 Score =  114 bits (285), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 58/559 (10%), Positives = 141/559 (25%), Gaps = 70/559 (12%)

Query: 94  YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTW--YGKTTLWP 151
                ++     +G      +G    DV   + I+    + D +   +            
Sbjct: 47  RTLVYNDAYAPMLGARHPDALGRPFFDVWPEVRIE-VGVLMDRVYAGDPVHMDDLQLTLH 105

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
             G         +  P+       +G   F                    ++F+ L E  
Sbjct: 106 RNGYPEETHFSFSYTPVPDDRNTVAGL--FCACTEITKQVLAERRLSAERERFASLFEQT 163

Query: 212 KGHSSVEKEKYDIFSQQSP---------PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
               +V + +   F   +P             R   +           + + +     + 
Sbjct: 164 PTFMTVLRGREHRFELANPRYLKLVGHRDVVGRTVAEALPDAVEQGFLEILDQVYDSGVP 223

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
            +        +       ++      +  +++               +  A  +      
Sbjct: 224 QTFHGIRYAVQAVPGGPHDERFVDVVYQPIRDVDGTVGGIFIEGADVTDRARAETRREAL 283

Query: 323 PETVDKCPIPFFVYSHGNLFYANPS------FLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
               D+      +    ++ +A          +    Y ++D       +    +AP + 
Sbjct: 284 VRITDRFNE---LTRADDIAFAASQVLGETLAVSRVGYGTIDPDAETLHVERDWNAPGVE 340

Query: 377 -------------------DNNAIKPVMLYRSDRTCIAASARLHT---------IQWNRE 408
                                  +    + R DRT  AA A             +     
Sbjct: 341 TLAGVVPLRTYGSFIDSLKRGEFVSIADVERDDRTAGAAEASKGRGAHAFVNVPVLEQGR 400

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME---------------IEVMQ 453
              A+     E  +  P+++             + + ++E                   +
Sbjct: 401 LVAALFVNHAEVRDWAPDDLAFIREVAGRTRIAVERSRVETALRDLNADLERQVAERSRE 460

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
           L    + ++D + I +  G  + TN A   L G+   +  R PF   +  +     +  L
Sbjct: 461 LSRTWQVSTDLLGIADDAGFFVRTNPAWKSLLGWSDAEAARIPFVELVHPDDVRATHAAL 520

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH 573
             + + +    L       T       L  +         +  +  D++E ++    L+ 
Sbjct: 521 DRLRAGEA--VLRFENRCRTTAGGYRWLAWVAVP--EGGQFYCSARDVTEEREHAATLAE 576

Query: 574 AKKIAEKESSHKSDFLARV 592
                ++  +   D LAR 
Sbjct: 577 RTAERDRLWNLSEDMLARA 595



 Score = 84.7 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 30/279 (10%), Positives = 75/279 (26%), Gaps = 18/279 (6%)

Query: 316 DEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
                L    +      F  +        N ++  +   +  D +               
Sbjct: 23  QAFVTLLRVMLSSRQPMFLCWGPERTLVYNDAYAPMLGARHPDALGRP------FFDVWP 76

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN-SLAMTFIPFEKANQFPENMPQNGIE 434
                +  +M        +       T+  N        +F      +            
Sbjct: 77  EVRIEVGVLMDRVYAGDPVHMDDLQLTLHRNGYPEETHFSFSYTPVPDDRNTVAGLFCAC 136

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDIL 493
            E     + +R++  E  +  S+ E T   + ++  RE      N    KL G+   D++
Sbjct: 137 TEITKQVLAERRLSAERERFASLFEQTPTFMTVLRGREHRFELANPRYLKLVGHR--DVV 194

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI------TLGSTKEEKLLSLRIIIKK 547
            +     L           L ++    + QT   I        G   +E+ + +     +
Sbjct: 195 GRTVAEALPDAVEQGFLEILDQVYDSGVPQTFHGIRYAVQAVPGGPHDERFVDVVYQPIR 254

Query: 548 LPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
                     +   D+++  + + +     +I ++ +  
Sbjct: 255 DVDGTVGGIFIEGADVTDRARAETRREALVRITDRFNEL 293



 Score = 40.8 bits (94), Expect = 0.88,   Method: Composition-based stats.
 Identities = 23/241 (9%), Positives = 57/241 (23%), Gaps = 14/241 (5%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
             +  G +  +S    + +G    +++             D    +  L++  +T     
Sbjct: 594 RANYQGTMSAVSPAWTQVLGWSEAELLSRPYATFMHPDDTDQT--LAALVRMGDTKRPTR 651

Query: 148 TLWPIEGTNL-YVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
               I  ++  +  I+    P      E  G     +     V     A      +    
Sbjct: 652 FENRIAASDGSWKSIEWTVAP------EPDGLHFIAVGRDLSVAKAREAELAAAQEALRQ 705

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
             ++ +    +       F+         ++   + + +      D              
Sbjct: 706 SQKM-EAVGQLTGGLAHDFNNLLAGISGSLELMQTRMQQGRLSDVDRYMAAAQGASKRAA 764

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
           +       F      + T       +        E +     P++         L P  V
Sbjct: 765 ALTHRLLAFS----RRQTLAPKPTDVNRLVSGMQELIQRTVGPAIPVEVVGASGLWPALV 820

Query: 327 D 327
           D
Sbjct: 821 D 821


>gi|315647521|ref|ZP_07900623.1| integral membrane sensor hybrid histidine kinase [Paenibacillus
           vortex V453]
 gi|315276960|gb|EFU40301.1| integral membrane sensor hybrid histidine kinase [Paenibacillus
           vortex V453]
          Length = 1015

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 64/254 (25%), Positives = 128/254 (50%), Gaps = 4/254 (1%)

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           +  +++    +        K +FLA+ SHE+RTPL  IIG ++ + +   G L +P  ++
Sbjct: 379 RAFSQVERLSERLLTLDKLKDEFLAKTSHELRTPLHGIIGLADALIDGSSGKLPSP-VVD 437

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
               +  SG  +  +VND+LD SK++  ++ L    V+L  +V   + ++   A +K +L
Sbjct: 438 LLRLMKVSGQRLAHLVNDILDFSKLKHQEIGLVIVTVNLRLSVELTLQVLNPLAQKKGLL 497

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +     ++I  ++AD   ++QI  N++ NAI +T   G + + T      +V +++ DTG
Sbjct: 498 LSHQLPDDI-YVMADENRLQQILHNLIGNAIAYT-ENGTVTV-TARRMYGQVSVQISDTG 554

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+   +  +  + F Q+    + +  GTG+GL + K +++ + G   + S   +G+   
Sbjct: 555 IGIAEADQVRIFESFEQVDPLHRSQQGGTGIGLSITKKLIELHDGSIGVTSRLGEGSTFS 614

Query: 806 IIFPLYDTSHPHDC 819
              PL     P + 
Sbjct: 615 FTLPLAGEGKPKES 628


>gi|255946519|ref|XP_002564027.1| Pc20g15550 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211588762|emb|CAP86884.1| Pc20g15550 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 685

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 90/522 (17%), Positives = 197/522 (37%), Gaps = 32/522 (6%)

Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDI 360
                N   L    +             P P  V      +   + S + + +      +
Sbjct: 23  TPPAENDLDLEDKIEPVTGSLSRIYRFTPKPTLVLDGTLRVVEVSNSHVEVFQRSRDQLL 82

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
                       P     +    +    S R       R+H  +++     +++  P  +
Sbjct: 83  AANVHDLPPSILPAPDVASLSGALGTAISTREVQ-VIKRVHVAKFDA--LFSLSVTPIFE 139

Query: 421 ANQFPENMPQNGI---EPEDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINREGIILS 476
            +     + +      + +  D    +  +         ++    D  I +++  G I +
Sbjct: 140 DDSLIYVLLEAQRTKHQRDRSDCINEQTYL---NETYKILVNTVRDYAIFMLDTRGHITT 196

Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
            N   + L GY   +I+ + F++F  ++          E+        +E       K+ 
Sbjct: 197 WNSGAAILKGYTSSEIIGQHFSIFYGRDDREAKKPA-RELEVCLQEGKVEDEGWRYRKDG 255

Query: 537 KLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
                 ++I  +  +S    +     D++E +  + +L       E+ +  KSDFLA +S
Sbjct: 256 TRFWANVMITAIYQNSSHVGFVKVTRDMTERRATQARLI---DAFEESAKSKSDFLANMS 312

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HE+RTP+  ++    ++              E+   ++ S +++L ++ND+LD SK+ SG
Sbjct: 313 HELRTPMNGMLLALTMLLRTEL----TDEQREFGCILEDSTSILLQVINDVLDYSKLSSG 368

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNIL 712
              L+ + V++   +S  +   Q  A +  + I    +   P  +  D    +Q+  N++
Sbjct: 369 SFPLNVDVVNIPNVISAVVRNCQS-ALKPGVQIMGGVSEGFPPSLKGDPLRFRQVLQNMV 427

Query: 713 SNAIHFTPSGGQIIISTTH----TSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNS 766
           +NA+ FT SG  + +  T+       +  ++   V DTG+G+          PF +  ++
Sbjct: 428 TNAVKFTESG-HVRVHATYAIDEKDPDMFVISTQVVDTGIGVPEDATNTLFTPFTRFADT 486

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP-AKGTLIEII 807
              + +GTGLGL + K++ +   G     + P   G++  + 
Sbjct: 487 AAKKYQGTGLGLSICKSLAELMDGTVGFHANPDGPGSVFWMT 528



 Score = 46.2 bits (108), Expect = 0.021,   Method: Composition-based stats.
 Identities = 18/142 (12%), Positives = 43/142 (30%), Gaps = 10/142 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP--NNHIGDLLKRQNTW 143
            + +D  G++   +       G  + ++IG            +        ++  ++   
Sbjct: 185 IFMLDTRGHITTWNSGAAILKGYTSSEIIGQHFSIFYGRDDREAKKPARELEVCLQEGKV 244

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +   +  +GT  +  + + A+        +      G V V R   + RA   RL   
Sbjct: 245 EDEGWRYRKDGTRFWANVMITAI--------YQNSSHVGFVKVTRDMTERRATQARLIDA 296

Query: 204 FSHLHEIKKGHSSVEKEKYDIF 225
           F    + K    +    +    
Sbjct: 297 FEESAKSKSDFLANMSHELRTP 318


>gi|152986132|ref|YP_001349017.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           PA7]
 gi|150961290|gb|ABR83315.1| probable sensor/response regulator hybrid [Pseudomonas aeruginosa
           PA7]
          Length = 651

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 99/492 (20%), Positives = 188/492 (38%), Gaps = 49/492 (9%)

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411
             Y  + D+      +  L A +L+       +              +L     +  +  
Sbjct: 32  FTYSRLQDLRQELTHTGQLIADQLAPAAEYGVIA------GNTPVLQKLLQATLDTPHVR 85

Query: 412 AMTFIP----FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
            +             +      QN    +   + I ++++ +    L   L++ +DG  +
Sbjct: 86  FIEVRDRNDNILVYVEQLPGALQNAAPIDIFHSTIQRQRIALASDPL---LDSANDGDGL 142

Query: 468 INRE--GIIL--STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
              +  G ++   +N A S+      E +L+             ++   L + LS  +  
Sbjct: 143 PGEDYLGRVVVGMSNDAFSQ---RQQEILLKAGLLAAFALILTFLVARRLAQRLSAPIST 199

Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDI-----------SEWKQEKNKLS 572
             + +    + + K          +            I            E +Q   +L 
Sbjct: 200 MGQAVEAIQSGDYK------TSLPILDDGEIGDLARHINNLASGLDRASREQEQAIGQLI 253

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
            A++ AE+ +  KSDFLA +SHE+RTP+  ++G  ++++             EY      
Sbjct: 254 SAREEAEQANRAKSDFLAMMSHELRTPMNGVLGMLQLLETTEQTR----EQAEYTALATE 309

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
           S   +L ++ND+LD S+IE G + L   P +L E V  +  + Q  A ++ + +      
Sbjct: 310 STEHLLKVINDILDFSRIERGALELECIPFNLLELVQGSALVFQHSAQQRGLALELQIQA 369

Query: 693 NI--PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDTGV 746
            +    +  D   ++QI +N+L NA+ FT  G  I +S    + +     +   V D+G+
Sbjct: 370 GLEHLEVRGDPTRIRQILVNLLGNALKFTEEGS-IHLSLEWQALDHEVLWLTCAVHDSGI 428

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G++   LE     F Q  +S   R  GTGLGL +A+ + +   G     S    G+   +
Sbjct: 429 GISPERLEHMFDAFQQADSSISRRYGGTGLGLAIARTLAERMGGTLQAQSKEGCGSTFTL 488

Query: 807 IFPL-YDTSHPH 817
             PL +  S PH
Sbjct: 489 EIPLPFQQSLPH 500


>gi|21426070|gb|AAM52311.1|AF502252_1 sensor kinase [Pseudomonas chlororaphis]
          Length = 917

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 78/243 (32%), Positives = 142/243 (58%), Gaps = 8/243 (3%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  A+K A + S  KS+FLA +SHEIRTPL  I+GF+ +++     P    R ++Y   
Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSELTP----RQLDYLGT 325

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I++S + +L I+N++LD SKIE+GK+ L   P +L + + + ++++   A+ K++ + + 
Sbjct: 326 IEKSADSLLGIINEILDFSKIEAGKLVLDSIPFNLRDLLQDTLTILAPAAHAKQLELVSL 385

Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQI---IISTTHTSNEEVILRVRDTG 745
              + P  ++ D   +KQI  N++SNAI FT  G  +   ++   H  + ++ + + DTG
Sbjct: 386 VYRDTPLSLVGDPLRLKQILTNLVSNAIKFTREGTIVARAMLEEEHEDSVQLRISIHDTG 445

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G++N ++    + F Q  NS   +  GTGLGL ++K +++   G+  + STP +G+   
Sbjct: 446 IGLSNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFW 505

Query: 806 IIF 808
           I  
Sbjct: 506 ISL 508


>gi|332534398|ref|ZP_08410238.1| hypothetical protein PH505_bh00050 [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332036132|gb|EGI72607.1| hypothetical protein PH505_bh00050 [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 939

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 81/256 (31%), Positives = 133/256 (51%), Gaps = 7/256 (2%)

Query: 561 ISEWK-QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           ++E   Q   +L    +   + +  KS FLA +SHEIRTPLTAI+G ++ + N+ + P  
Sbjct: 449 LTEQVTQRTAELQAIAQELREANDVKSQFLANISHEIRTPLTAILGQTDALINELYEP-- 506

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
                +    I R  + +  ++ND+LD+SKIE+ ++ L+     + E V++  ++    A
Sbjct: 507 -ESLKDELRVIQRHSDHLKSLINDVLDLSKIEANRLELNISCFDIVELVNDVHAMFITQA 565

Query: 680 NEKRILIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738
             K + +       N      DL  VKQI +N+ +NAI FT +G QIII+   +    VI
Sbjct: 566 KAKNLRLILDNQVGNEFYTKLDLIRVKQILINLCANAIKFTHAG-QIIIALNKSEQGLVI 624

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           + V+DTG+GM++ +L+   + F Q  NS   R  GTGLGL L++ +     G   + S  
Sbjct: 625 I-VKDTGIGMSSKQLKLIFECFSQADNSISRRFGGTGLGLSLSQQLAAMMGGYISVQSEY 683

Query: 799 AKGTLIEIIFPLYDTS 814
            KG+      P  + +
Sbjct: 684 KKGSQFSFFLPCAEVN 699


>gi|319654313|ref|ZP_08008401.1| hypothetical protein HMPREF1013_05021 [Bacillus sp. 2_A_57_CT2]
 gi|317394013|gb|EFV74763.1| hypothetical protein HMPREF1013_05021 [Bacillus sp. 2_A_57_CT2]
          Length = 931

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 87/374 (23%), Positives = 152/374 (40%), Gaps = 41/374 (10%)

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
            ++  L  ++E    GIAI N  G +        +L      +   +   +  +      
Sbjct: 411 AQIKLLEKVIETL--GIAITNISGRMEI-----ERLL----AESQAQTEELQAQAEELQS 459

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568
            +  L         Q+ E   +    EE+     +  +                E +  K
Sbjct: 460 QSEELQAQSEEMQSQSEELRMINEQLEERSRDAEMKSE----------------ELQAAK 503

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
            +L    K     S +KS+FLA +SHE+RTPL +I+  SE++       L      E++ 
Sbjct: 504 EELEEKAKQLSLSSKYKSEFLANMSHELRTPLNSILLLSEMLAEDPDQMLT-EEQKEFSK 562

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I  SG  +L ++ND+LD+SK+E GK+ + FE V++ E            A  K +    
Sbjct: 563 VIHTSGQDLLTLINDILDLSKVEVGKLEISFEEVNMGEMSQRMNQHFTQVAKHKNLEFTV 622

Query: 689 SFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHT-----------SNE 735
           S +  +P +   D + ++QI  N+LSNA  FT  G   +                  +++
Sbjct: 623 SSSEEVPPVFHTDEQRLQQIVKNLLSNAFKFTEEGSVAVTFEKAAQSDFFGLPLSAYTDD 682

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            + + V DTG+G+   + +   + F Q   +   +  GTGLGL ++K       G   + 
Sbjct: 683 WLKITVLDTGIGIPAEKQQLIFEAFQQADGATMRKYGGTGLGLSISKEFAQLLGGICKVE 742

Query: 796 STPAKGTLIEIIFP 809
           S   KG+   ++ P
Sbjct: 743 SEEGKGSRFTLVIP 756


>gi|254562541|ref|YP_003069636.1| sensor hybrid histidine kinase with multiple PAS and response
           regulator receiver domains [Methylobacterium extorquens
           DM4]
 gi|254269819|emb|CAX25794.1| putative sensor hybrid histidine kinase with multiple PAS and
           response regulator receiver domains [Methylobacterium
           extorquens DM4]
          Length = 665

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 80/527 (15%), Positives = 177/527 (33%), Gaps = 39/527 (7%)

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPI--PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIA 363
                      + ++     V+       + +   G +   NP       Y + + I   
Sbjct: 11  VRATKAIEAAADRDDRYRLLVEAIVDYAIYMLDPRGYIASWNPGAQRFKGYTTDEIIGE- 69

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
              S    A   + +   + + +  ++            ++ +  + +    +     ++
Sbjct: 70  -HFSRFYTAEDRATDLPSRALHIAATEGR---FEQEGWRVRKDG-SLMWAHVLIDPIRSE 124

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNRAVS 482
             + +    I  +  + +  +  ++    +   +++   D  I +++ +G + S NR   
Sbjct: 125 DGQLVGYAKITRDLSERKATQEALQQSEQRFRLLVQGVQDYAIYMLDPQGKVSSWNRGAQ 184

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
           +  GY   +I+ + F+ F      +        + +       E       K+       
Sbjct: 185 RFKGYTDAEIIGEHFSRFYTDEDRATDLPT-RALRTAADEGRFEAEGWRVRKDGTRFWAH 243

Query: 543 IIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKES--SHKSDFLARVSHEI 596
           ++I  +       +       DI+E +  + +L   +    +             V+H+ 
Sbjct: 244 VVIDAIRGDHGELVGFAKITRDITERRNVQQELEATRARFIQSQKMEAIGQLTGGVAHDF 303

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
              L  ++G    +  +R     +P+  +      ++      +   +L  ++    +  
Sbjct: 304 NNLLAVVLGNL-SLARKRLP--NDPKLRQLIENSIQAAERGAALTKRMLAFAR----RQE 356

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716
           L   P+++ + V     L+Q   +   IL+ T F   +P   AD   ++   LN+  NA 
Sbjct: 357 LETGPINVPDLVRGMAELLQRSISS-TILVNTQFPLQLPLAFADASQLELALLNLTVNAR 415

Query: 717 HFTPSGGQIIISTTHT-----------SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
              P  G I I+                   V L V DTG GM    L KA +PF     
Sbjct: 416 DAMPESGTITIAAREERVGADEIAGLAPGHYVCLSVTDTGTGMDAETLAKATEPFFTTKG 475

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
                G+GTGLGL +     + + G+  + S    GT  E+  P  +
Sbjct: 476 ----VGKGTGLGLSMIHGFAEQSGGRLVLKSNLGSGTTAELWLPAAE 518



 Score = 68.5 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 21/253 (8%), Positives = 72/253 (28%), Gaps = 12/253 (4%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI--DPNNHIGDLLKRQNTW 143
            + +D  GY+   +    +  G    ++IG              D  +    +   +  +
Sbjct: 39  IYMLDPRGYIASWNPGAQRFKGYTTDEIIGEHFSRFYTAEDRATDLPSRALHIAATEGRF 98

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +      +G+ ++  + +   PI S + +  G+    I          +   ++ +++
Sbjct: 99  EQEGWRVRKDGSLMWAHVLID--PIRSEDGQLVGYAK--ITRDLSERKATQEALQQSEQR 154

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
           F  L +  + ++    +     S  +           + +   +  +    +     L T
Sbjct: 155 FRLLVQGVQDYAIYMLDPQGKVSSWNRGAQRFKGYTDAEIIGEHFSRFYTDEDRATDLPT 214

Query: 264 SEESSLPEQEDFHT------INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
               +  ++  F         +  ++        ++ +  E   +       +      +
Sbjct: 215 RALRTAADEGRFEAEGWRVRKDGTRFWAHVVIDAIRGDHGELVGFAKITRDITERRNVQQ 274

Query: 318 GENLTPETVDKCP 330
               T     +  
Sbjct: 275 ELEATRARFIQSQ 287



 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/248 (6%), Positives = 52/248 (20%), Gaps = 2/248 (0%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + +D  G +   +    +  G    ++IG              +     L    +    
Sbjct: 167 IYMLDPQGKVSSWNRGAQRFKGYTDAEIIGEHFSRFYTDEDRATDLPTRALRTAADEGRF 226

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +   W +          +    I   + E  GF    I        + +   +    +F 
Sbjct: 227 EAEGWRVRKDGTRFWAHVVIDAIRGDHGELVGFAK--ITRDITERRNVQQELEATRARFI 284

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
              +++          +D  +  +         +     +    +      +      + 
Sbjct: 285 QSQKMEAIGQLTGGVAHDFNNLLAVVLGNLSLARKRLPNDPKLRQLIENSIQAAERGAAL 344

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
              +        +             +    + S       N            + +   
Sbjct: 345 TKRMLAFARRQELETGPINVPDLVRGMAELLQRSISSTILVNTQFPLQLPLAFADASQLE 404

Query: 326 VDKCPIPF 333
           +    +  
Sbjct: 405 LALLNLTV 412


>gi|317154328|ref|YP_004122376.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316944579|gb|ADU63630.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 756

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 85/556 (15%), Positives = 187/556 (33%), Gaps = 50/556 (8%)

Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330
            +      ++    +    G L  + +     L  +         +          D  P
Sbjct: 238 AEGRATRADVPTTARPDELGELARSHEAMVRALHAKQQALNEKMLE-----YELLFDNVP 292

Query: 331 IPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389
               V      L   N         ++ +      G         +++     PV     
Sbjct: 293 CVVTVQDRNYKLLEYNK--------ETRERFSPFPGAYCYQAYKGINERCEECPVEKTFQ 344

Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449
           +     A     + +                 +   +      +  +  + +  + +++ 
Sbjct: 345 NGL---AHCSEESRRNPDGTYSHWIVHTAPIRDVNGQVTKAMEMCLDITERKKLEERLKE 401

Query: 450 EVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
              +  +I     + I +++     IL  N   S ++GY  E+++ +PF   +  +    
Sbjct: 402 SEKKYHTIFNNVPNSIFVVDNTTLNILDCNTTASSVYGYTPEELIGRPFITVVHPDEAER 461

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI--IIKKLPFSSCYSLTMHDISEWKQ 566
           +   L    +++  +++        K+     + I   +          ++  DI+E  +
Sbjct: 462 IRAQLQAFTAINQVKSV-------RKDGTSFFVDIMQAVSAHSDMEYLLISTTDITERLE 514

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ--RFGPLGNPRYI 624
            +  L HA K+A        +    V+HE+  PLT I   S     +      +      
Sbjct: 515 AEQLLFHAGKMAT-----LGEMATGVAHELNQPLTVIKSASNFFIKKVNAGETIPAQTIA 569

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
             A  +D   +    I+N + +  +    K +   E V++++A+  A +L+        I
Sbjct: 570 TLAREVDSYVDRATKIINHMREFGR----KADQGLERVNVNDAIGRAFTLLTKQFEVHGI 625

Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAI-------HFTPSGGQIIISTTHTSNEEV 737
            +R   A+ +P ++A    ++Q+ +N+L NA            S   +I   + T    V
Sbjct: 626 TVRWELADGLPAVMASPDQLEQVVINLLVNARDILEEKTDAANSDTPLITVRSRTDGNRV 685

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
            ++V D G G+    + K  +PF          G+GTGLGL ++  ++    G  +  + 
Sbjct: 686 FIQVEDNGGGIPEPIIHKIFEPFFTTK----RVGKGTGLGLSISYGLIKNIGGVIHAENG 741

Query: 798 PAKGTLIEIIFPLYDT 813
              G    I  P+ D+
Sbjct: 742 E-AGARFTITLPVADS 756



 Score = 46.9 bits (110), Expect = 0.015,   Method: Composition-based stats.
 Identities = 25/238 (10%), Positives = 57/238 (23%), Gaps = 17/238 (7%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEG 154
           + + +       G    ++IG     V      D    I   L+   T   +      +G
Sbjct: 427 ILDCNTTASSVYGYTPEELIGRPFITVVHP---DEAERIRAQLQA-FTAINQVKSVRKDG 482

Query: 155 TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG------KRLDKKFSHLH 208
           T+ +V I  A                           +   L         L +  + + 
Sbjct: 483 TSFFVDIMQAVSAHSDMEYLLI------STTDITERLEAEQLLFHAGKMATLGEMATGVA 536

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
                  +V K   + F ++           +++L        D        +      +
Sbjct: 537 HELNQPLTVIKSASNFFIKKVNAGETIPAQTIATLAREVDSYVDRATKIINHMREFGRKA 596

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
               E  +  +                   +  +      P++ A  D+ E +    +
Sbjct: 597 DQGLERVNVNDAIGRAF-TLLTKQFEVHGITVRWELADGLPAVMASPDQLEQVVINLL 653


>gi|238754497|ref|ZP_04615852.1| Signal transduction histidine-protein kinase barA [Yersinia ruckeri
           ATCC 29473]
 gi|238707326|gb|EEP99688.1| Signal transduction histidine-protein kinase barA [Yersinia ruckeri
           ATCC 29473]
          Length = 902

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 88/335 (26%), Positives = 146/335 (43%), Gaps = 17/335 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           LF Y +   +  P    +               L   +   +             +++ +
Sbjct: 163 LFAYRLMRDVTGPIRNMVNTVDR-----IRRGQLDSRVEGHMLGELNILKNGINSMAMSL 217

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 218 AAYHEEMQQNIDQATSDLRETLEQMEIQNVELGLAKKRAQEAARIKSEFLANMSHELRTP 277

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+     Q       P   +Y   I RS N +L I+ND+LD SK+E+ K+ L  
Sbjct: 278 LNGVIGFT----RQTLKTSLTPTQTDYLQTIQRSANNLLSIINDVLDFSKLEAEKLVLEH 333

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P  L E + E + L+   A+EK + +     N++P  ++ D   ++Q+  N+L NAI F
Sbjct: 334 IPFPLRETLDEVVILLAHTAHEKGLELTMQVNNDVPEQVVGDSMRLQQVMTNLLGNAIKF 393

Query: 719 TPSGGQ-IIISTTHTSNEEVILRVR--DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T +G   I +S    +  ++ L V   DTG+G++  +  +  + F Q   S   R  GTG
Sbjct: 394 TENGNVDIHVSLRSHTRRQIKLAVEIQDTGIGISEQQQSQLFQAFRQADASISRRHGGTG 453

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           LGL + + +V    G     S   +G+       L
Sbjct: 454 LGLVITERLVKEMDGDISFHSELNRGSTFRFHITL 488


>gi|49475185|ref|YP_033226.1| hypothetical protein BH03850 [Bartonella henselae str. Houston-1]
 gi|49237990|emb|CAF27195.1| hypothetical protein BH03850 [Bartonella henselae str. Houston-1]
          Length = 437

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 117/432 (27%), Positives = 209/432 (48%), Gaps = 32/432 (7%)

Query: 392 TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV 451
              A       ++   ++S+    +  E A++ P     +G   E    +     +    
Sbjct: 24  ERSAFREIAERLRDELDSSVEGMHLVEETADELPCAQTLSGNVIEKFLVKEPAAVL---- 79

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
               S+L+  +DG+  +N +G I + +R+   L GY + ++L +P +      + S++  
Sbjct: 80  ----SLLDTATDGVLWLNEQGFIQAVSRSALALTGYEINELLAQPLSSLFTLQSRSLVEK 135

Query: 512 YLT--EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN 569
           Y     +   +            TK  K +++ + +  L     Y++ + +++      +
Sbjct: 136 YFELIRMKRKNQAFIRGDTADLVTKNYKSITVSMTMVFLARQDSYAVILRNMTSVVLPLD 195

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           K +   K+              V HE+RTPL A+IGF+E++++ RFG + N RY  Y   
Sbjct: 196 KKAEENKMV------------GVVHEMRTPLNALIGFAEIMRDGRFGAIDNERYRGYLRD 243

Query: 630 IDRSGNLVLDIVNDLLDISKI------ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
           I  SG  +L +VN LL+ SK            ++  E   +   +  +++ ++  AN   
Sbjct: 244 IISSGRHILSLVNQLLECSKANYLSSNHQNNRSVIAETFDVTSCLRASMAFLETQANYNG 303

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
           I++R      +P I    +  +QI  N+LSNAI FTPSGGQII+  +++  E V + V D
Sbjct: 304 IIMRIVAPVYVPFICISQQIFRQIIWNLLSNAIRFTPSGGQIIVHVSYSKKERVKISVSD 363

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGE----GTGLGLPLAKAMVDANMGKFYIFSTPA 799
            GVGM + E+ +A++P+GQ+       G+    GTGLGLP+ KAMV+ + G+F +FS P 
Sbjct: 364 NGVGMNDEEILRALQPYGQVERKDGRSGDSVFVGTGLGLPMCKAMVEESGGQFLLFSKPN 423

Query: 800 KGTLIEIIFPLY 811
            GT +E+ FP++
Sbjct: 424 HGTTVEMFFPIF 435


>gi|115377642|ref|ZP_01464837.1| hamp domain protein [Stigmatella aurantiaca DW4/3-1]
 gi|115365351|gb|EAU64391.1| hamp domain protein [Stigmatella aurantiaca DW4/3-1]
          Length = 2450

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 87/375 (23%), Positives = 158/375 (42%), Gaps = 40/375 (10%)

Query: 458  LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
            L+  ++ I ++     ++  N    +L       +  +  T  L+  +       LT+  
Sbjct: 1634 LDQLTESIGVV---LNMIIANMRTEQLL------LQSQGLTQELQSQSRE-----LTQQQ 1679

Query: 518  SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI 577
                R   E        EEK   L     ++   +                + L    + 
Sbjct: 1680 EELKRTNTELEAQALELEEKAKQLEEQNTRVEEKNAEVELAR---------SSLEEKAEQ 1730

Query: 578  AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
                S +KS+FLA +SHE+RTPL +++  ++++ + + G L   + +EYAN I  SG  +
Sbjct: 1731 LSLISKYKSEFLANMSHELRTPLNSLLILAKLLADNKDGNLSG-KQVEYANTIYASGGDL 1789

Query: 638  LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-R 696
            L ++N++LD+SK+E+GKM +    + L E         +  A +K +        N P +
Sbjct: 1790 LSLINEILDLSKVEAGKMQVEPRDIVLTELNQFVDRSFRPVAEQKNLSFDVELLANAPRQ 1849

Query: 697  ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-------------VILRVRD 743
            I  D + ++Q+  N+LSNA  FT  GG + +                      +   V D
Sbjct: 1850 IRTDPQRLQQVLKNLLSNAFKFTDEGG-VQLVVKLADKGVRFEHEVLKRAKRVIAFVVTD 1908

Query: 744  TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
            TG+G+   + +   + F Q   S   +  GTGLGL +++ +     G+ ++ ST  KG+ 
Sbjct: 1909 TGIGIAKDKQKLIFEAFQQADGSTARKYGGTGLGLSISREIAKLLGGEIHVESTLGKGST 1968

Query: 804  IEIIFPLYDTSHPHD 818
              +  P  +   P D
Sbjct: 1969 FTLFLP-PEYVAPED 1982


>gi|333016459|gb|EGK35790.1| sensor protein evgS [Shigella flexneri K-304]
          Length = 1127

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 91/419 (21%), Positives = 165/419 (39%), Gaps = 12/419 (2%)

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
            W+  +                  +    +       ++ +  +E ++    ++ ++  +
Sbjct: 458 TWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISFRKALSDSLPN 517

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--NTPSVMNHYLTEILSLDL 521
              ++N +G ++S N A    F          P         +  S  +    E      
Sbjct: 518 PTYVVNWQGNVISHNSAFEHYFTADYYKNAMLPLENSDSPFKDVFSNAHEVTAETKENRT 577

Query: 522 RQTLEKIT-LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
             T       G  K        +       ++ Y     DI+E +   N L   K  A K
Sbjct: 578 IYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLINALEVEKNKAIK 637

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            +  KS FLA +SHEIRTP+++I+GF E++       L   + +E  +    +G  +L +
Sbjct: 638 ATVAKSQFLATMSHEIRTPISSIMGFLELLS---GSGLSKEQRVEAISLAYATGQSLLGL 694

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILA 699
           + ++LD+ KIESG   L  + V +   V          A  K I +  S    +   +  
Sbjct: 695 IGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPDHYLVKI 754

Query: 700 DLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMTNYELEKA 756
           D ++ KQ+  N+LSNA+ FT  G  +I  S  H  +   ++   + D+G G++  E ++ 
Sbjct: 755 DPQAFKQVLSNLLSNALKFTTEGAVKITTSLGHIDDNHAVIKMTIMDSGSGLSQEEQQQL 814

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            K + Q   S   +  G+GLGL + K ++    G   + S P  GT   I  P+  +  
Sbjct: 815 FKRYSQT--SAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVEISQQ 871


>gi|333015994|gb|EGK35326.1| sensor protein evgS [Shigella flexneri K-227]
          Length = 1127

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 91/419 (21%), Positives = 165/419 (39%), Gaps = 12/419 (2%)

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
            W+  +                  +    +       ++ +  +E ++    ++ ++  +
Sbjct: 458 TWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISFRKALSDSLPN 517

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--NTPSVMNHYLTEILSLDL 521
              ++N +G ++S N A    F          P         +  S  +    E      
Sbjct: 518 PTYVVNWQGNVISHNSAFEHYFTADYYKNAMLPLENSDSPFKDVFSNAHEVTAETKENRT 577

Query: 522 RQTLEKIT-LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
             T       G  K        +       ++ Y     DI+E +   N L   K  A K
Sbjct: 578 IYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLINALEVEKNKAIK 637

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            +  KS FLA +SHEIRTP+++I+GF E++       L   + +E  +    +G  +L +
Sbjct: 638 ATVAKSQFLATMSHEIRTPISSIMGFLELLS---GSGLSKEQRVEAISLAYATGQSLLGL 694

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILA 699
           + ++LD+ KIESG   L  + V +   V          A  K I +  S    +   +  
Sbjct: 695 IGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPDHYLVKI 754

Query: 700 DLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMTNYELEKA 756
           D ++ KQ+  N+LSNA+ FT  G  +I  S  H  +   ++   + D+G G++  E ++ 
Sbjct: 755 DPQAFKQVLSNLLSNALKFTTEGAVKITTSLGHIDDNHAVIKMTIMDSGSGLSQEEQQQL 814

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            K + Q   S   +  G+GLGL + K ++    G   + S P  GT   I  P+  +  
Sbjct: 815 FKRYSQT--SAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVEISQQ 871


>gi|332755415|gb|EGJ85779.1| sensor protein evgS [Shigella flexneri K-671]
          Length = 1128

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 91/419 (21%), Positives = 165/419 (39%), Gaps = 12/419 (2%)

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
            W+  +                  +    +       ++ +  +E ++    ++ ++  +
Sbjct: 459 TWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISFRKALSDSLPN 518

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--NTPSVMNHYLTEILSLDL 521
              ++N +G ++S N A    F          P         +  S  +    E      
Sbjct: 519 PTYVVNWQGNVISHNSAFEHYFTADYYKNAMLPLENSDSPFKDVFSNAHEVTAETKENRT 578

Query: 522 RQTLEKIT-LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
             T       G  K        +       ++ Y     DI+E +   N L   K  A K
Sbjct: 579 IYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLINALEVEKNKAIK 638

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            +  KS FLA +SHEIRTP+++I+GF E++       L   + +E  +    +G  +L +
Sbjct: 639 ATVAKSQFLATMSHEIRTPISSIMGFLELLS---GSGLSKEQRVEAISLAYATGQSLLGL 695

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILA 699
           + ++LD+ KIESG   L  + V +   V          A  K I +  S    +   +  
Sbjct: 696 IGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPDHYLVKI 755

Query: 700 DLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMTNYELEKA 756
           D ++ KQ+  N+LSNA+ FT  G  +I  S  H  +   ++   + D+G G++  E ++ 
Sbjct: 756 DPQAFKQVLSNLLSNALKFTTEGAVKITTSLGHIDDNHAVIKMTIMDSGSGLSQEEQQQL 815

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            K + Q   S   +  G+GLGL + K ++    G   + S P  GT   I  P+  +  
Sbjct: 816 FKRYSQT--SAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVEISQQ 872


>gi|332755015|gb|EGJ85380.1| sensor protein evgS [Shigella flexneri 4343-70]
          Length = 1147

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 91/419 (21%), Positives = 165/419 (39%), Gaps = 12/419 (2%)

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
            W+  +                  +    +       ++ +  +E ++    ++ ++  +
Sbjct: 478 TWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISFRKALSDSLPN 537

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--NTPSVMNHYLTEILSLDL 521
              ++N +G ++S N A    F          P         +  S  +    E      
Sbjct: 538 PTYVVNWQGNVISHNSAFEHYFTADYYKNAMLPLENSDSPFKDVFSNAHEVTAETKENRT 597

Query: 522 RQTLEKIT-LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
             T       G  K        +       ++ Y     DI+E +   N L   K  A K
Sbjct: 598 IYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLINALEVEKNKAIK 657

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            +  KS FLA +SHEIRTP+++I+GF E++       L   + +E  +    +G  +L +
Sbjct: 658 ATVAKSQFLATMSHEIRTPISSIMGFLELLS---GSGLSKEQRVEAISLAYATGQSLLGL 714

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILA 699
           + ++LD+ KIESG   L  + V +   V          A  K I +  S    +   +  
Sbjct: 715 IGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPDHYLVKI 774

Query: 700 DLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMTNYELEKA 756
           D ++ KQ+  N+LSNA+ FT  G  +I  S  H  +   ++   + D+G G++  E ++ 
Sbjct: 775 DPQAFKQVLSNLLSNALKFTTEGAVKITTSLGHIDDNHAVIKMTIMDSGSGLSQEEQQQL 834

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            K + Q   S   +  G+GLGL + K ++    G   + S P  GT   I  P+  +  
Sbjct: 835 FKRYSQT--SAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVEISQQ 891


>gi|313651190|gb|EFS15589.1| sensor protein evgS [Shigella flexneri 2a str. 2457T]
          Length = 1128

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 91/419 (21%), Positives = 165/419 (39%), Gaps = 12/419 (2%)

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
            W+  +                  +    +       ++ +  +E ++    ++ ++  +
Sbjct: 459 TWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISFRKALSDSLPN 518

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--NTPSVMNHYLTEILSLDL 521
              ++N +G ++S N A    F          P         +  S  +    E      
Sbjct: 519 PTYVVNWQGNVISHNSAFEHYFTADYYKNAMLPLENSDSPFKDVFSNAHEVTAETKENRT 578

Query: 522 RQTLEKIT-LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
             T       G  K        +       ++ Y     DI+E +   N L   K  A K
Sbjct: 579 IYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLINALEVEKNKAIK 638

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            +  KS FLA +SHEIRTP+++I+GF E++       L   + +E  +    +G  +L +
Sbjct: 639 ATVAKSQFLATMSHEIRTPISSIMGFLELLS---GSGLSKEQRVEAISLAYATGQSLLGL 695

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILA 699
           + ++LD+ KIESG   L  + V +   V          A  K I +  S    +   +  
Sbjct: 696 IGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPDHYLVKI 755

Query: 700 DLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMTNYELEKA 756
           D ++ KQ+  N+LSNA+ FT  G  +I  S  H  +   ++   + D+G G++  E ++ 
Sbjct: 756 DPQAFKQVLSNLLSNALKFTTEGAVKITTSLGHIDDNHAVIKMTIMDSGSGLSQEEQQQL 815

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            K + Q   S   +  G+GLGL + K ++    G   + S P  GT   I  P+  +  
Sbjct: 816 FKRYSQT--SAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVEISQQ 872


>gi|317052669|ref|YP_004113785.1| PAS sensor protein [Desulfurispirillum indicum S5]
 gi|316947753|gb|ADU67229.1| PAS sensor protein [Desulfurispirillum indicum S5]
          Length = 695

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 85/420 (20%), Positives = 169/420 (40%), Gaps = 15/420 (3%)

Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
             A  +  QW+++  L +  +    A      +    I  +       ++ +        
Sbjct: 278 MQAEEYLAQWHQDRLLTIAIMVLLSAVLGGFGLY---ILRQLSLQEKTEKALRASRNNFE 334

Query: 456 SILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
            +L++    I + + R   ++  N+   KL+G  + +   K      +Q  P    H L 
Sbjct: 335 MLLDSMDAIIYVSDIRTHELIYLNQMARKLYGDVIGEKCWKYIQENQQQPCPFCRYHLL- 393

Query: 515 EILSLDLRQTLEKITLGSTKE-EKLLSLRIIIKKLPFSSCY-SLTMHDISEWKQEKNKLS 572
            +           +    T    +    R                 +DI+E K+ + ++ 
Sbjct: 394 -VDENGQPNGENIVWENQTPSTGQWFQRRDRSIHWSDGRVVHLQIANDITELKEAEAQIR 452

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
              +     +  K+ F+  VSHE RTPL  I+G +E I  + F  +   +  ++   I  
Sbjct: 453 ANLEEERSINKMKNTFIQTVSHEFRTPLAGIMGSAE-ILERYFERISEEQRAQHLLSIRN 511

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
               ++ I+ D+L +  ++SG+   + +P++L       ++ +Q    ++ I I    A 
Sbjct: 512 GVKRMVAILEDVLILGSLDSGQTAFNPQPLNLVSLCHTIVTEMQQIYRDREIHID---AG 568

Query: 693 NIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751
            IP  I AD + ++ I  N+LSNA+ ++P    + +  +    E +I+ VRD G+G+   
Sbjct: 569 QIPNNIDADAKLLRYIVTNLLSNALKYSPFEKPVHLQISQQHEEYIIVCVRDEGIGIPED 628

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
           E +   + F +   S     +GTGLGL + +  V  + G     S   +GT      P++
Sbjct: 629 EQKNMFQSFYRC--SNTEGIKGTGLGLIIVQKCVFLHGGTIEFTSKAGQGTSFYFYLPIH 686


>gi|281601798|gb|ADA74782.1| putative Sensor protein [Shigella flexneri 2002017]
          Length = 1088

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 91/419 (21%), Positives = 165/419 (39%), Gaps = 12/419 (2%)

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
            W+  +                  +    +       ++ +  +E ++    ++ ++  +
Sbjct: 419 TWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISFRKALSDSLPN 478

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--NTPSVMNHYLTEILSLDL 521
              ++N +G ++S N A    F          P         +  S  +    E      
Sbjct: 479 PTYVVNWQGNVISHNSAFEHYFTADYYKNAMLPLENSDSPFKDVFSNAHEVTAETKENRT 538

Query: 522 RQTLEKIT-LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
             T       G  K        +       ++ Y     DI+E +   N L   K  A K
Sbjct: 539 IYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLINALEVEKNKAIK 598

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            +  KS FLA +SHEIRTP+++I+GF E++       L   + +E  +    +G  +L +
Sbjct: 599 ATVAKSQFLATMSHEIRTPISSIMGFLELLS---GSGLSKEQRVEAISLAYATGQSLLGL 655

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILA 699
           + ++LD+ KIESG   L  + V +   V          A  K I +  S    +   +  
Sbjct: 656 IGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPDHYLVKI 715

Query: 700 DLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMTNYELEKA 756
           D ++ KQ+  N+LSNA+ FT  G  +I  S  H  +   ++   + D+G G++  E ++ 
Sbjct: 716 DPQAFKQVLSNLLSNALKFTTEGAVKITTSLGHIDDNHAVIKMTIMDSGSGLSQEEQQQL 775

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            K + Q   S   +  G+GLGL + K ++    G   + S P  GT   I  P+  +  
Sbjct: 776 FKRYSQT--SAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVEISQQ 832


>gi|110806323|ref|YP_689843.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Shigella flexneri 5 str. 8401]
 gi|110615871|gb|ABF04538.1| putative sensor for regulator EvgA [Shigella flexneri 5 str. 8401]
 gi|333001508|gb|EGK21076.1| sensor protein evgS [Shigella flexneri VA-6]
          Length = 1197

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 91/419 (21%), Positives = 165/419 (39%), Gaps = 12/419 (2%)

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
            W+  +                  +    +       ++ +  +E ++    ++ ++  +
Sbjct: 528 TWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISFRKALSDSLPN 587

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--NTPSVMNHYLTEILSLDL 521
              ++N +G ++S N A    F          P         +  S  +    E      
Sbjct: 588 PTYVVNWQGNVISHNSAFEHYFTADYYKNAMLPLENSDSPFKDVFSNAHEVTAETKENRT 647

Query: 522 RQTLEKIT-LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
             T       G  K        +       ++ Y     DI+E +   N L   K  A K
Sbjct: 648 IYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLINALEVEKNKAIK 707

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            +  KS FLA +SHEIRTP+++I+GF E++       L   + +E  +    +G  +L +
Sbjct: 708 ATVAKSQFLATMSHEIRTPISSIMGFLELLS---GSGLSKEQRVEAISLAYATGQSLLGL 764

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILA 699
           + ++LD+ KIESG   L  + V +   V          A  K I +  S    +   +  
Sbjct: 765 IGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPDHYLVKI 824

Query: 700 DLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMTNYELEKA 756
           D ++ KQ+  N+LSNA+ FT  G  +I  S  H  +   ++   + D+G G++  E ++ 
Sbjct: 825 DPQAFKQVLSNLLSNALKFTTEGAVKITTSLGHIDDNHAVIKMTIMDSGSGLSQEEQQQL 884

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            K + Q   S   +  G+GLGL + K ++    G   + S P  GT   I  P+  +  
Sbjct: 885 FKRYSQT--SAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVEISQQ 941


>gi|24113731|ref|NP_708241.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Shigella flexneri 2a str. 301]
 gi|24052805|gb|AAN43948.1| putative sensor for regulator EvgA [Shigella flexneri 2a str. 301]
          Length = 1197

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 91/419 (21%), Positives = 165/419 (39%), Gaps = 12/419 (2%)

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
            W+  +                  +    +       ++ +  +E ++    ++ ++  +
Sbjct: 528 TWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISFRKALSDSLPN 587

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--NTPSVMNHYLTEILSLDL 521
              ++N +G ++S N A    F          P         +  S  +    E      
Sbjct: 588 PTYVVNWQGNVISHNSAFEHYFTADYYKNAMLPLENSDSPFKDVFSNAHEVTAETKENRT 647

Query: 522 RQTLEKIT-LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
             T       G  K        +       ++ Y     DI+E +   N L   K  A K
Sbjct: 648 IYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLINALEVEKNKAIK 707

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            +  KS FLA +SHEIRTP+++I+GF E++       L   + +E  +    +G  +L +
Sbjct: 708 ATVAKSQFLATMSHEIRTPISSIMGFLELLS---GSGLSKEQRVEAISLAYATGQSLLGL 764

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILA 699
           + ++LD+ KIESG   L  + V +   V          A  K I +  S    +   +  
Sbjct: 765 IGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPDHYLVKI 824

Query: 700 DLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMTNYELEKA 756
           D ++ KQ+  N+LSNA+ FT  G  +I  S  H  +   ++   + D+G G++  E ++ 
Sbjct: 825 DPQAFKQVLSNLLSNALKFTTEGAVKITTSLGHIDDNHAVIKMTIMDSGSGLSQEEQQQL 884

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            K + Q   S   +  G+GLGL + K ++    G   + S P  GT   I  P+  +  
Sbjct: 885 FKRYSQT--SAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVEISQQ 941


>gi|30063777|ref|NP_837948.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Shigella flexneri 2a str. 2457T]
 gi|30042032|gb|AAP17758.1| putative sensor for regulator EvgA [Shigella flexneri 2a str.
           2457T]
          Length = 1197

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 91/419 (21%), Positives = 165/419 (39%), Gaps = 12/419 (2%)

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
            W+  +                  +    +       ++ +  +E ++    ++ ++  +
Sbjct: 528 TWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISFRKALSDSLPN 587

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--NTPSVMNHYLTEILSLDL 521
              ++N +G ++S N A    F          P         +  S  +    E      
Sbjct: 588 PTYVVNWQGNVISHNSAFEHYFTADYYKNAMLPLENSDSPFKDVFSNAHEVTAETKENRT 647

Query: 522 RQTLEKIT-LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
             T       G  K        +       ++ Y     DI+E +   N L   K  A K
Sbjct: 648 IYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLINALEVEKNKAIK 707

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            +  KS FLA +SHEIRTP+++I+GF E++       L   + +E  +    +G  +L +
Sbjct: 708 ATVAKSQFLATMSHEIRTPISSIMGFLELLS---GSGLSKEQRVEAISLAYATGQSLLGL 764

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILA 699
           + ++LD+ KIESG   L  + V +   V          A  K I +  S    +   +  
Sbjct: 765 IGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPDHYLVKI 824

Query: 700 DLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMTNYELEKA 756
           D ++ KQ+  N+LSNA+ FT  G  +I  S  H  +   ++   + D+G G++  E ++ 
Sbjct: 825 DPQAFKQVLSNLLSNALKFTTEGAVKITTSLGHIDDNHAVIKMTIMDSGSGLSQEEQQQL 884

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            K + Q   S   +  G+GLGL + K ++    G   + S P  GT   I  P+  +  
Sbjct: 885 FKRYSQT--SAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVEISQQ 941


>gi|261822543|ref|YP_003260649.1| phosphate regulon sensor protein [Pectobacterium wasabiae WPP163]
 gi|261606556|gb|ACX89042.1| PAS/PAC sensor signal transduction histidine kinase [Pectobacterium
           wasabiae WPP163]
          Length = 440

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 64/357 (17%), Positives = 126/357 (35%), Gaps = 33/357 (9%)

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
           +  S  E+  D + I   EG I   N     L  +   +   +     L     +     
Sbjct: 99  RFRSGAESLPDAVVITTEEGTIFWCNHLAQHLLNFRWPEDNGQNILNLLRYPEFTNYM-- 156

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572
                     Q   +           +  R++           + + DI++  Q +    
Sbjct: 157 --------KGQDFSRPLTLQLNNSHHVEFRVMPY---SEGQLLMVVRDITQMHQLEG--- 202

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
                       + +F A VSHE+RTPLT + G+ E+++ +        +     N +  
Sbjct: 203 -----------ARRNFFANVSHELRTPLTVLQGYLEMMQEETLDAALRGKA---LNTMQE 248

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
               +  +V  LL +S+IE+       E V +   +       Q  +  +   I      
Sbjct: 249 QTRRMDGLVKQLLTLSRIEAATAIDLNEKVDIPLMLRVLQREAQTLSQGRH-EIVFRVNE 307

Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752
           N+ R+  +   ++    N++ NA++ TP G +I +            +V D G G+    
Sbjct: 308 NL-RVFGNEEQLRSAVSNLVYNAVNHTPEGTRIEVCWQKIPQG-AQFQVSDNGPGIAAEH 365

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           L +  + F ++  ++  +  G+GLGL + K  +  +  +  I S    G+      P
Sbjct: 366 LPRLTERFYRVDKARSRQTGGSGLGLAIVKHALSHHDSRLEIMSEDGLGSRFVFTLP 422


>gi|261200755|ref|XP_002626778.1| sensor histidine kinase/response regulator [Ajellomyces dermatitidis
            SLH14081]
 gi|239593850|gb|EEQ76431.1| sensor histidine kinase/response regulator [Ajellomyces dermatitidis
            SLH14081]
 gi|239607275|gb|EEQ84262.1| sensor histidine kinase/response regulator [Ajellomyces dermatitidis
            ER-3]
          Length = 2346

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 89/419 (21%), Positives = 164/419 (39%), Gaps = 41/419 (9%)

Query: 410  SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL-CSILE-----ATSD 463
             L       E  +    +        + +  +I    +      L  ++L+       S+
Sbjct: 1667 WLVAAASDHENGDVAFADGLAFSEVEDKMAQQITHYTLRTREPVLVHNVLDDERFSNVSE 1726

Query: 464  GIAIINREGI------ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
              A  N  G       I+  N     L G            V  + N+ +  N  +  ++
Sbjct: 1727 AYAARNPHGKSVIALPIIQAN----NLLGV---------IHVEGKPNSFTQRNLVVLRLV 1773

Query: 518  SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW-KQEKNKLSHAKK 576
               +  +L    L     +           +           +     K  + +  H  K
Sbjct: 1774 CNQVGISLANAFLYRNASKVS---AANAAMVEAQKRALALAREAERKSKVAEAEAKHNVK 1830

Query: 577  IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
            + E  +  KS FLA VSH++RTP+  +IG SE++K        +     Y   I    + 
Sbjct: 1831 LKEDAAKAKSIFLANVSHDLRTPMNGVIGLSELLKKTSL----DREQDGYVESIRVCADT 1886

Query: 637  VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696
            +L ++ND+LD SK+E+GKM +   P++L E ++E +  ++    +  +          P 
Sbjct: 1887 LLTLINDILDFSKLEAGKMKVSTVPLNLRETIAEVVRALRYTHRDCGLKTIEDLDGVDPN 1946

Query: 697  --ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH--TSNEEVILR--VRDTGVGMTN 750
              ++ D   + QI +N+LSN+  FTP G  + +           + +   V DTG+G++ 
Sbjct: 1947 LLVMGDPVRLHQIFMNLLSNSYKFTPKGS-VTVKAKVTDEDEGRIRITCKVADTGIGISG 2005

Query: 751  YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA-NMGKFYIFSTPAKGTLIEIIF 808
             +L +  +PF Q  +S      G+GLGL + KA+++    GK ++ S    GT +    
Sbjct: 2006 EQLVRLFRPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGKIWLQSEEGVGTTVTFTL 2064


>gi|238786435|ref|ZP_04630354.1| Phosphate regulon sensor protein phoR [Yersinia bercovieri ATCC
           43970]
 gi|238712661|gb|EEQ04754.1| Phosphate regulon sensor protein phoR [Yersinia bercovieri ATCC
           43970]
          Length = 418

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 67/355 (18%), Positives = 133/355 (37%), Gaps = 37/355 (10%)

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
           +  S  E+  D + I   +G I   N    +L G+   +   +     L     S     
Sbjct: 99  RFRSGAESLPDAVVITTIDGNIFWCNGLAQQLLGFRWPEDNGQHILNLLRYPEFSQYL-- 156

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572
                    +Q   +           +  R++           +   D+++ +Q +    
Sbjct: 157 --------QQQLFSRPLTLQLNNGYYVEFRVMPY---SEGQLLMVARDVTQMRQLEG--- 202

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF-GPLGNPRYIEYANYID 631
                       + +F A VSHE+RTPLT + G+ E++ +Q   GPL +    +    + 
Sbjct: 203 -----------ARRNFFANVSHELRTPLTVLQGYLEMMHDQELVGPLRD----KALGTMQ 247

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN-EKRILIRTSF 690
                +  +V  LL +S+IE+       E V +   +      VQ  +N    I  R + 
Sbjct: 248 EQTKRMDGLVKQLLTLSRIEAAPNVDMNERVDIPLMLKVLQHEVQALSNGRHEITFRVN- 306

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
                ++  +   ++    N++ NA++ TP G +I +    T       +V D G G+  
Sbjct: 307 --EQLKVFGNEDQLRSAVSNLVYNAVNHTPEGTKIEVCWQQTPQG-AHFQVSDNGPGIGP 363

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
             + +  + F ++  ++  +  G+GLGL + K  +  +  +  + S    GT   
Sbjct: 364 EHVPRLTERFYRVDKARSRQTGGSGLGLAIVKHALSHHDARLEVMSEIGLGTRFI 418


>gi|237719307|ref|ZP_04549788.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
 gi|229451167|gb|EEO56958.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
          Length = 533

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 82/382 (21%), Positives = 166/382 (43%), Gaps = 21/382 (5%)

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAI--INREGIILSTNRAVSKLFGYPVEDIL 493
           E       +R++      L SI+      I +   +    +L  N +++  +G       
Sbjct: 162 EIAVREYKEREVRASKT-LSSIMNNMGVDIYVNSFDSHD-MLYVNESMAAPYGGIEHFEG 219

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK-EEKLLSL-RIIIKKLPFS 551
           +K +    +  T          ++  + + T           ++    +       +   
Sbjct: 220 KKCWQALYKDKTGECEFCPKKHLIDENGQPTKVYSWDYQRPFDKCWFRVFSAAFAWIDGQ 279

Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
             + +T  DI+  K  + +L  AK+ AE     KS FLA +SHEIRTPL AI+GF+ ++ 
Sbjct: 280 IAHVITSVDINHQKTIEEELRVAKEKAENLDRLKSAFLANMSHEIRTPLNAIVGFASLLV 339

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
                        +Y + +  +  L+L +++D+LD+SKIE+G ++   + + +     + 
Sbjct: 340 ESD----DKKERQDYVDIMQENTELLLQLISDILDLSKIEAGTLDFTMDHLDIKSFCEDI 395

Query: 672 ISLVQLYANEKRILIRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
           +    +   +K + +    A ++P   I  D + + Q+  N ++NA+ FT  G QI++  
Sbjct: 396 MRNYDIK-EDKPVPVL--LAPDLPEYYIYTDKKRLMQVITNFINNALKFTNEG-QIMLEY 451

Query: 730 THT-SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
            H   + E+   V DTG+G+   ++++    F ++ +      +GTGLGL + +++++  
Sbjct: 452 RHKAESNEIEFAVTDTGMGIAPDKVDQVFDRFVKLNSF----SKGTGLGLSICRSIIEHL 507

Query: 789 MGKFYIFSTPAKGTLIEIIFPL 810
            G     S    G+      PL
Sbjct: 508 GGTIGAESEIGVGSRFWFTHPL 529


>gi|237713651|ref|ZP_04544132.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262406251|ref|ZP_06082800.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294643736|ref|ZP_06721535.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|294810105|ref|ZP_06768776.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
 gi|229446373|gb|EEO52164.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262354954|gb|EEZ04045.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292640920|gb|EFF59139.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|294442709|gb|EFG11505.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
          Length = 533

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 82/382 (21%), Positives = 166/382 (43%), Gaps = 21/382 (5%)

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAI--INREGIILSTNRAVSKLFGYPVEDIL 493
           E       +R++      L SI+      I +   +    +L  N +++  +G       
Sbjct: 162 EIAVREYKEREVRASKT-LSSIMNNMGVDIYVNSFDSHD-MLYVNESMAAPYGGIEHFEG 219

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK-EEKLLSL-RIIIKKLPFS 551
           +K +    +  T          ++  + + T           ++    +       +   
Sbjct: 220 KKCWQALYKDKTGECEFCPKKHLIDENGQPTKVYSWDYQRPFDKCWFRVFSAAFAWIDGQ 279

Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
             + +T  DI+  K  + +L  AK+ AE     KS FLA +SHEIRTPL AI+GF+ ++ 
Sbjct: 280 IAHVITSVDINHQKTIEEELRVAKEKAENLDRLKSAFLANMSHEIRTPLNAIVGFASLLV 339

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
                        +Y + +  +  L+L +++D+LD+SKIE+G ++   + + +     + 
Sbjct: 340 ESD----DKKERQDYVDIMQENTELLLQLISDILDLSKIEAGTLDFTMDHLDIKSFCEDI 395

Query: 672 ISLVQLYANEKRILIRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
           +    +   +K + +    A ++P   I  D + + Q+  N ++NA+ FT  G QI++  
Sbjct: 396 MRNYDIK-EDKPVPVL--LAPDLPEYYIYTDKKRLMQVITNFINNALKFTNEG-QIMLEY 451

Query: 730 THT-SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
            H   + E+   V DTG+G+   ++++    F ++ +      +GTGLGL + +++++  
Sbjct: 452 RHKAESNEIEFAVTDTGMGIAPDKVDQVFDRFVKLNSF----SKGTGLGLSICRSIIEHL 507

Query: 789 MGKFYIFSTPAKGTLIEIIFPL 810
            G     S    G+      PL
Sbjct: 508 GGTIGAESEIGVGSRFWFTHPL 529


>gi|255943187|ref|XP_002562362.1| Pc18g05350 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211587095|emb|CAP94759.1| Pc18g05350 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1302

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 76/255 (29%), Positives = 129/255 (50%), Gaps = 12/255 (4%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           +S  +    + + A++ AE  +  KS+FLA +SHEIRTP+  IIG +++  +        
Sbjct: 685 VSNLRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDD---LK 741

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
           P   E  N +    N +L I++D+LDISKIE+ +M +   P ++   V  A+  + + AN
Sbjct: 742 PYTREMLNVVHNLANSLLTIIDDILDISKIEANRMVIESIPFTVRGTVFNALKTLAVKAN 801

Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV-- 737
           EK + +     N +P  ++ D   ++QI LN++ NAI FT  G ++ ++   +  E+   
Sbjct: 802 EKFLSLTYQVDNTVPDYVIGDPFRLRQIILNLVGNAIKFTEHG-EVKLTIRKSDREQCTT 860

Query: 738 -----ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
                   V DTG+G+   +L+     F Q   S   R  GTGLGL ++K +V+   G  
Sbjct: 861 NEYAFEFSVSDTGIGIEEDKLDLIFDTFQQADGSTTRRFGGTGLGLSISKRLVNLMGGDV 920

Query: 793 YIFSTPAKGTLIEII 807
           ++ S    G+     
Sbjct: 921 WVTSEYGHGSTFHFT 935


>gi|90414589|ref|ZP_01222562.1| putative histidine protein kinase PhoR [Photobacterium profundum
           3TCK]
 gi|90324305|gb|EAS40874.1| putative histidine protein kinase PhoR [Photobacterium profundum
           3TCK]
          Length = 434

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 69/364 (18%), Positives = 139/364 (38%), Gaps = 29/364 (7%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           ++   + +  +  E+  D + +   EG I+  N+    L G    D   +P +  L    
Sbjct: 92  ELATLIRRFRNGAESLPDAVVVFRSEGNIVWCNKLAQHLLGLRWPDDAGQPISNLLRSPD 151

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
                        L++   L              +L + I +      Y + + D+S+ K
Sbjct: 152 FVRYIAKQEFEYPLEITSPLNYDR----------TLELRIMRYTEGE-YLMVVRDVSQLK 200

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           Q +                + +F A VSHE+RTP+T + G+ E+  ++    L  P + +
Sbjct: 201 QLEG--------------MRRNFFANVSHELRTPMTVLQGYLEM--SKDPEMLAGPMWGK 244

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
               +      +  +V  LL +SKIE+       E V++   +          + +K   
Sbjct: 245 AHGVMTEQLVRMNSLVEQLLTLSKIEAAPTIELEEIVNIPAMLDILEKEAISLSGDKNQH 304

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +      ++  +  D   ++    N++ NA+  TPS   I +    ++     L V D+G
Sbjct: 305 LTFDVDASL-NVFGDEDQLRSAVSNLVYNAVKHTPSDANITVRWYLSAGG-PRLEVTDSG 362

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
            G+    + +  + F ++  ++     G+GLGL + K  +  +  +  I S   KG+   
Sbjct: 363 EGIGPQHIHRLTERFYRVDKARSRETGGSGLGLAIVKHALSHHDSQLEIESELDKGSTFS 422

Query: 806 IIFP 809
              P
Sbjct: 423 FTLP 426


>gi|77459262|ref|YP_348769.1| histidine kinase [Pseudomonas fluorescens Pf0-1]
 gi|77383265|gb|ABA74778.1| histidine kinase [Pseudomonas fluorescens Pf0-1]
          Length = 1053

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 83/391 (21%), Positives = 164/391 (41%), Gaps = 36/391 (9%)

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI-ILSTNRAV 481
                + +   +   +  +     +        ++++    G+ +I+R    +L  N+  
Sbjct: 344 GSGRALNRWYTDRVILPAQSAHASIAESEAFCRAVIDTAPTGLCVISRRNHQVLLENQLA 403

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
            +                    +    +   L +  +       E        + + L +
Sbjct: 404 QQ-------------------WHDSGELISLLDQQAATGHGHA-ELEI-----DSRHLHV 438

Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
             +  +      +   +HD++   ++   L  A++ A+  +  KS FLA +SHEIRTPL 
Sbjct: 439 AFVATRYQGQDAWLCALHDVTRHVEDSAALEVARQAADSANQAKSRFLATISHEIRTPLY 498

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
            ++G  E++      P    R  EY   I RS   +  +++D+LD+SKIE+G+MNL  +P
Sbjct: 499 GVLGTLELLGLTALAP----RQQEYLETIQRSSASLFKLISDVLDVSKIEAGQMNLELQP 554

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTP 720
               E   + +     +A  K + +       +P  +L D + ++QI  N+LSNAI FT 
Sbjct: 555 FCPLELTEDVVRSYGAFARGKGLQLYACIDAALPDHLLGDAQRIRQILNNLLSNAIKFTD 614

Query: 721 SGGQIIISTTHTSNE---EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
           +G  ++      ++     V  +V D+GVG++  + ++   PF Q+  +      G GLG
Sbjct: 615 NGRVVVRVRVLQNSGGQARVQWQVSDSGVGISQAQQQQLFDPFYQVNEADSHA--GAGLG 672

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           L + K + +   G+  + S P  G+   +  
Sbjct: 673 LAICKWLCELMHGQLNVVSEPGLGSCFNLQL 703


>gi|294852372|ref|ZP_06793045.1| two-component sensor histidine kinase [Brucella sp. NVSL 07-0026]
 gi|294820961|gb|EFG37960.1| two-component sensor histidine kinase [Brucella sp. NVSL 07-0026]
          Length = 843

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 99/626 (15%), Positives = 208/626 (33%), Gaps = 51/626 (8%)

Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271
           +G      + Y   +  +    +R  ++V +     +     L       L+++E     
Sbjct: 90  RGQIVYANQAYARMTGATDADGIRPLDQVLASEPAASDAIYRLTNAVRDGLSAQEEVRIS 149

Query: 272 QEDFHTINLNQY--TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE-----NLTPE 324
                  N +      +     L+  ++     ++ +         ++            
Sbjct: 150 GGLSRGANGSLAPVWYRIKARALEGGAEFKGPLVAWQVADISEERAEQERFFQELQEAIN 209

Query: 325 TVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
            +D  P  FF     G + Y N +               +  L+ ++    ++       
Sbjct: 210 HLDHAPAGFFSANPAGRIIYLNATLAEWLGVDLTQFTPGSLTLNDIVAGSGMA------L 263

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
           +   +++      +     +      SLA+ F    +  +         I  +  +   +
Sbjct: 264 IKAVKAEPGTSRNTVIDLDLIKRNGQSLAVRFYHRVQTARDGMPGTTRTIVLDRAEGDDS 323

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG--YPVEDILRKPFTVFL 501
                   ++      +    IA ++ EG  L TN     +F      + I R+     +
Sbjct: 324 SVAQRSAEVRFTRFFNSAPMAIAAVDAEGHTLRTNARFLDIFSGVVDRDAIDRRVKLENV 383

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF----SSCYSLT 557
                    +                 T+    EE+ +   +                ++
Sbjct: 384 VHERDRETFNKALAAAFAGQASISPVDTVLPGNEERHIRFYMSPVTDLGGEAAEEAAVIS 443

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
             + +E K  +N+++ ++K+              ++H+    LTAII  S+++       
Sbjct: 444 AVETTEQKALENQMAQSQKM-----QAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNH--R 496

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
             +P + +  N I ++ N    +V  LL  S+    +  L  E + L + +++ + ++  
Sbjct: 497 ASDPSFPDIMN-IKQNANRAASLVRQLLAFSR----RQTLRPEVLDLTDVLAD-LRMLLA 550

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT------- 730
               K I ++     ++  + ADL   +Q+A+N+  NA    P GGQI + T        
Sbjct: 551 RLVGKDIELKIDHGRDLWPVKADLGQFEQVAVNLAVNARDAMPEGGQITLRTRNIPAADA 610

Query: 731 -------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
                      + V+  V DTG G+    LEK  +PF          G+GTGLGL +   
Sbjct: 611 AKLHYRDLPEADYVVFEVEDTGTGIPADVLEKIFEPFFTTK----EVGKGTGLGLSMVYG 666

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFP 809
           ++    G  Y  S   KGT  +I  P
Sbjct: 667 IIKQTGGFIYCDSEVGKGTTFKIFLP 692



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/238 (11%), Positives = 66/238 (27%), Gaps = 7/238 (2%)

Query: 319 ENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
           ++L    +D  P    +    G + YAN ++  +T     D I     +  L   P  SD
Sbjct: 70  QDLAHSFMDTQPEGTVISDPRGQIVYANQAYARMTGATDADGIRPLDQV--LASEPAASD 127

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
                   +                 +    +   + +    +A +         +  + 
Sbjct: 128 AIYRLTNAVRDGLSAQEEVRISGGLSRGANGSLAPVWYRIKARALEGGAEFKGPLVAWQV 187

Query: 438 VDTRINKRKMEIEVMQLC-SI--LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
            D    + + E    +L  +I  L+    G    N  G I+  N  +++  G  +     
Sbjct: 188 ADISEERAEQERFFQELQEAINHLDHAPAGFFSANPAGRIIYLNATLAEWLGVDLTQFTP 247

Query: 495 KPFT-VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
              T   +   +   +   +           ++   +    +   +     ++     
Sbjct: 248 GSLTLNDIVAGSGMALIKAVKAEPGTSRNTVIDLDLIKRNGQSLAVRFYHRVQTARDG 305



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 47/420 (11%), Positives = 103/420 (24%), Gaps = 38/420 (9%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD--ILHIDPNNHIGDLLKRQNTWYGKT 147
           D  G +   ++   +  G      I   L  V        D    + + ++   +   + 
Sbjct: 88  DPRGQIVYANQAYARMTGATDADGI-RPLDQVLASEPAASDAIYRLTNAVRDGLSAQEEV 146

Query: 148 TL-----WPIEGTNLYVPIDLAALPIYSRNREFSG-FRGFGIVHVNRVDNDPRALGKRLD 201
            +         G+   V   + A  +     EF G    + +  ++    +     + L 
Sbjct: 147 RISGGLSRGANGSLAPVWYRIKARALEGGA-EFKGPLVAWQVADISEERAEQERFFQELQ 205

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR------MKNKVSSLTEYYAHKDDVLK 255
           +  +HL     G  S       I+   +    L           ++           ++K
Sbjct: 206 EAINHLDHAPAGFFSANPAGRIIYLNATLAEWLGVDLTQFTPGSLTLNDIVAGSGMALIK 265

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN--NSKESFEYLSHRNHPSLSA 313
             K    TS  + +                     T ++          L        S 
Sbjct: 266 AVKAEPGTSRNTVIDLDLIKRNGQSLAVRFYHRVQTARDGMPGTTRTIVLDRAEGDDSSV 325

Query: 314 YFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLT-KYKSVDDIEIAGGLSTLLD 371
                E       +  P+    V + G+    N  FL +       D I+    L  +  
Sbjct: 326 AQRSAEVRFTRFFNSAPMAIAAVDAEGHTLRTNARFLDIFSGVVDRDAIDRRVKLENV-V 384

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
             +  +         +    +       L     N E  +     P              
Sbjct: 385 HERDRETFNKALAAAFAGQASISPVDTVL---PGNEERHIRFYMSPVTDLGGEAAEEAAV 441

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSI----------LEATSDGIAIINREGIILSTNRAV 481
               E  + +  + +M  +  ++ ++                 I + +    +L TN   
Sbjct: 442 ISAVETTEQKALENQM-AQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSD---LLLTNHRA 497



 Score = 48.9 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 45/134 (33%), Gaps = 12/134 (8%)

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY-LT 514
           S ++   +G  I +  G I+  N+A +++ G    D   +P    L     +    Y LT
Sbjct: 75  SFMDTQPEGTVISDPRGQIVYANQAYARMTGATDAD-GIRPLDQVLASEPAASDAIYRLT 133

Query: 515 EILSLDLRQTLEKITLG---STKEEKLLSLRIIIKKLPFSSC-------YSLTMHDISEW 564
             +   L    E    G         L  +   IK               +  + DISE 
Sbjct: 134 NAVRDGLSAQEEVRISGGLSRGANGSLAPVWYRIKARALEGGAEFKGPLVAWQVADISEE 193

Query: 565 KQEKNKLSHAKKIA 578
           + E+ +     + A
Sbjct: 194 RAEQERFFQELQEA 207


>gi|149173448|ref|ZP_01852078.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797]
 gi|148847630|gb|EDL61963.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797]
          Length = 575

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 77/257 (29%), Positives = 136/257 (52%), Gaps = 11/257 (4%)

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           ++   + ++L+       + +  K +FLA +SHE+RTPL +I+GFS+++ N +     N 
Sbjct: 275 TDLDTKVDELAQVNLRLYEMNKLKDEFLATMSHELRTPLNSILGFSDLLANSKD---LNE 331

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
           +   Y + I  SG  +L  +ND+LD++KIESGKM L    +++ + +   +  +   A++
Sbjct: 332 KQKRYVSNIQMSGKNLLAQINDVLDLAKIESGKMELQLSEITVADLIERRVGNMLPLADK 391

Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-TSNEEVI-L 739
           K I + +     IP +  D   ++QI  N+LSNAI FTP GG++ ++      N +++ L
Sbjct: 392 KNIELTSEIDPKIPILFQDSIKIQQILNNLLSNAIKFTPEGGRVHVAARLCGENPKLMDL 451

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQ------QIRGEGTGLGLPLAKAMVDANMGKFY 793
            V DTG+G+   E E   + F Q  +S           EGTGLGL + + +     G+ +
Sbjct: 452 IVEDTGIGIPLDEQEHIFEKFRQGKSSSESRDTMSRSYEGTGLGLSIIRELSKLLDGEVF 511

Query: 794 IFSTPAKGTLIEIIFPL 810
           + S   +G+      P+
Sbjct: 512 LESEFGRGSKFTARLPV 528


>gi|45657908|ref|YP_001994.1| histidine kinase response regulator hybrid protein [Leptospira
           interrogans serovar Copenhageni str. Fiocruz L1-130]
 gi|45601149|gb|AAS70631.1| histidine kinase response regulator hybrid protein [Leptospira
           interrogans serovar Copenhageni str. Fiocruz L1-130]
          Length = 974

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 77/256 (30%), Positives = 141/256 (55%), Gaps = 8/256 (3%)

Query: 561 ISEWKQEKNKL-----SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
           I E K ++ +L         K  E    +KS+FLA +SHE+RTPL +++  S+ + + + 
Sbjct: 520 ILEMKNKEVELAKSDIEQKTKQLELSGKYKSEFLANMSHELRTPLNSLLILSKDLADNKR 579

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
             L     +E AN I +SG+ +L ++ND+LD+SKIESGKM+++ E V L +   E +S  
Sbjct: 580 KNLS-EDQVESANIIYKSGHDLLVLINDVLDLSKIESGKMSVNLERVVLRKFAKELMSTF 638

Query: 676 QLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
           +L A EK++ +   F +++P +   D   + QI  N++SNA+ FT  G ++ +     + 
Sbjct: 639 KLQATEKKLDLDLIFDDDLPEVIRTDSHRLNQILKNLISNALKFTERG-KVQVEIKKQNK 697

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
           ++++  V D+G+G+   +     + F Q   S   +  GTGLGL +++ +     G+ ++
Sbjct: 698 DKILFSVIDSGIGIPEEKHSAIFEAFQQADGSTSRKYGGTGLGLSISRELAKLLGGEIFL 757

Query: 795 FSTPAKGTLIEIIFPL 810
            S   +G+   +  P+
Sbjct: 758 KSKVNQGSTFSLSLPI 773


>gi|114319827|ref|YP_741510.1| periplasmic sensor signal transduction histidine kinase
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226221|gb|ABI56020.1| periplasmic sensor signal transduction histidine kinase
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 917

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 83/316 (26%), Positives = 152/316 (48%), Gaps = 7/316 (2%)

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDI 561
             +    +  Y   +LS  +     ++ + S  + + LS   +++ L  +S        +
Sbjct: 593 RDHARPELVGYAERLLSGSIGSASARVMVSSIIKGEALSFEGVMEILDATSRAIEYSRRL 652

Query: 562 S----EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
                E +   ++L  A +  ++    K +F++ VSHE+RTPLT+I  F E++ +     
Sbjct: 653 EQKSRELEMATDELRRANERLKELDHLKDEFVSMVSHELRTPLTSIRAFGEILLSNP--E 710

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
           L   +  E+   + +    +  ++N +LD+SKIESG    H E + L++ V EA    + 
Sbjct: 711 LDAEQRKEFLQVVVKESERLTRLINQVLDLSKIESGAAEWHLETLDLNQVVQEAADATRQ 770

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT-PSGGQIIISTTHTSNEE 736
             ++ R+ ++         I  D   + Q+ +N+LSNA  FT P  G++ +S    S  +
Sbjct: 771 IFHDTRVDLQVKAPEQPTIITGDHDRLIQLVINLLSNAAKFTDPDNGRVEVSVVPVSARK 830

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           + LRV+D G G++  E  K    F Q+ + Q  + +G+GLGL + K ++DA+ G   + S
Sbjct: 831 LELRVQDNGPGISEAEQRKIFDKFHQVSSQQAGKPKGSGLGLAICKLIMDAHSGDIRVES 890

Query: 797 TPAKGTLIEIIFPLYD 812
            P  G      FP+ D
Sbjct: 891 EPGAGATFICEFPVGD 906


>gi|109896835|ref|YP_660090.1| multi-sensor hybrid histidine kinase [Pseudoalteromonas atlantica
           T6c]
 gi|109699116|gb|ABG39036.1| multi-sensor hybrid histidine kinase [Pseudoalteromonas atlantica
           T6c]
          Length = 1045

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 75/246 (30%), Positives = 133/246 (54%), Gaps = 17/246 (6%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  A+K A   S+ KS FLA +SHEIRTPL AI+GFS+ ++   F         +  N 
Sbjct: 417 RLDIARKEAVAASNVKSQFLANMSHEIRTPLNAILGFSKELQQGDFSA----DKRDQINI 472

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I+ + + ++ IVND+LD+SKIE+GK+ ++  P S++E + E I ++   A+ K +     
Sbjct: 473 INAAADNLMTIVNDVLDVSKIEAGKLQINSHPFSINELLEEMIGVMAKSAHLKGLEFVYD 532

Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI--------LRV 741
                 +++ D   ++QI  N+L NA+ FT +G          ++ +V+        +++
Sbjct: 533 IEPLPLKLIGDSYRIRQILNNLLGNALKFTDTG-----HIGLAASGKVLEHGIFELNIKI 587

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            DTG+G++  +  K    F Q+ ++     +GTGLGL + K +V    G+  + S+P +G
Sbjct: 588 EDTGIGISREDKRKLFTAFSQVDDALNRSYQGTGLGLVICKELVKLMHGQLSLQSSPGQG 647

Query: 802 TLIEII 807
           +   + 
Sbjct: 648 STFNVT 653


>gi|218531744|ref|YP_002422560.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium chloromethanicum CM4]
 gi|218524047|gb|ACK84632.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium chloromethanicum CM4]
          Length = 515

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 70/447 (15%), Positives = 156/447 (34%), Gaps = 23/447 (5%)

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
                      +     D        R   +         +        +         G
Sbjct: 75  HPDDRQARAHAIESVLRDGGSYEIEYR---VVLPNGRGGWLRSRGQVHLDAEGRPHRHRG 131

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
           +     + +  + ++      L SIL+   + + +I+  G+I S N A  +LFGY   + 
Sbjct: 132 VVFSIEEQKQVEAELRAREAHLRSILDTMPEAMVVIDEAGLIHSFNPAAERLFGYAAGEA 191

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPF 550
           + +   + + +         L        R  +   +   G   +     + + I ++  
Sbjct: 192 IGQDVRILMPEAMQDGHAADLERYRQTRQRHIIGTTRCVTGRRHDGSTFPMELAIGEMHS 251

Query: 551 SSC--YSLTMHDISEWKQEKNKLSHAKKIAEKESS--HKSDFLARVSHEIRTPLTAIIGF 606
                ++  ++D++  ++ + +L   +      S      +    ++HE+  PL AI  +
Sbjct: 252 GERTFFTGFINDLTAQRRTEARLQELQSELGHVSRLSAMGEMATTLAHELNQPLGAITNY 311

Query: 607 SEVIKN--QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           +   +       P    R  E  +           I+  L +   +  G+     EPV  
Sbjct: 312 TNGCRRLLAHPDPETIARAQEVLDKAAEQALRARQIIARLREF--VARGETEKRVEPV-- 367

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724
              + EA +L    A E+ I         +  +L D   V+Q+ +N++ NA        +
Sbjct: 368 ATMIEEAGALTLAAAGEQGITAHVVPDPRVGSVLVDRVQVQQVLVNLMRNACEAMQRSSR 427

Query: 725 --IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
             + ++T   S +   + V DTG G+     ++  +PF     +      G G+GL +++
Sbjct: 428 RELTVATRRVSPDLAEVAVSDTGPGIAEEVADRLFQPFVTTKEA------GMGVGLSISR 481

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFP 809
            +++A+ G+ ++    A G    +  P
Sbjct: 482 TIIEAHGGRLWVEPNAAGGATFRLTLP 508



 Score = 48.9 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 37/252 (14%), Positives = 73/252 (28%), Gaps = 20/252 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G +   +    +  G  A + IG  +  +        + H  DL + + T      
Sbjct: 167 IDEAGLIHSFNPAAERLFGYAAGEAIGQDVRILMPE--AMQDGHAADLERYRQTRQRHII 224

Query: 149 --LWPIEGT---NLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                + G        P++LA   ++S  R F  F GF  ++         A  + L  +
Sbjct: 225 GTTRCVTGRRHDGSTFPMELAIGEMHSGERTF--FTGF--INDLTAQRRTEARLQELQSE 280

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
             H+  +         E     + +   P   + N  +      AH D         +L 
Sbjct: 281 LGHVSRLSA-----MGEMATTLAHELNQPLGAITNYTNGCRRLLAHPDPETIARAQEVLD 335

Query: 264 SEE----SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
                   +               T+K+         +     L+      ++A+     
Sbjct: 336 KAAEQALRARQIIARLREFVARGETEKRVEPVATMIEEAGALTLAAAGEQGITAHVVPDP 395

Query: 320 NLTPETVDKCPI 331
            +    VD+  +
Sbjct: 396 RVGSVLVDRVQV 407


>gi|108758204|ref|YP_630588.1| sensory box histidine kinase [Myxococcus xanthus DK 1622]
 gi|108462084|gb|ABF87269.1| sensory box histidine kinase [Myxococcus xanthus DK 1622]
          Length = 886

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 98/792 (12%), Positives = 233/792 (29%), Gaps = 92/792 (11%)

Query: 89  IDAHGYLKEISEELPKTIG-NYAFKM--------IGMRLCDVSDILHIDPNNHIGDLLKR 139
           +D HG    ++    +  G     +M         G+ L D      ++       LL  
Sbjct: 114 VDRHGRFVLLNPMAQQIFGALPPPEMPVSQWSKYFGLYLPDTVTPYPVETLPLSRALLHG 173

Query: 140 QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199
           +     +            + + + A  +     +  G     +           A  + 
Sbjct: 174 EAVDQAE-VYVRNARHPKGLWLQVGARVLTDSTGDVYGAA--SVFRDITAIKQAEAALRA 230

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQS---PPPHLRMKNKVSSLTEYYAHKDDVLKT 256
            ++KF  L+            +  + S             +  +   +  +   +     
Sbjct: 231 EEEKFRSLYRYTPAMMHSIDAEGRLVSVSEFWLRTLGYSREEVLGRRSVDFFTPESRRYA 290

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN------SKESFEYLSHRNHPS 310
            ++ L    ++ + +   +  +  N          +          +             
Sbjct: 291 TEHVLPVFFKTGVCKDVPYQIVKKNGEVLDVLLSAISERDASGRMVRSLAVLTDVTERKR 350

Query: 311 LSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
                 E E      +D     FF+        + N  +  L  ++++ ++        +
Sbjct: 351 AEDALAESEKRLRAILDNANAVFFILDRQERYIFVNREWERLF-HRTLQEVAGKSTAD-I 408

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
              P+ +  +     +    +        R   I         +T   F   +       
Sbjct: 409 FPGPQAARFHETSQAVFTTGELVQ-----REECIPLEDGVHTHLT-QKFPLIDSSGTLYA 462

Query: 430 QNGIEPEDVDTRINK---RKMEIEVMQLCSILEA-------------------------- 460
             GI  +  + +  +   R +      L + L++                          
Sbjct: 463 LCGISTDVTELKQMELGQRFLSEASQALVTSLDSETTLQRVAELSVPTLGELCVVSLLGK 522

Query: 461 ----TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP-----FTVFLEQNTPSVM-- 509
                   +A  + EG      R V +           +            +++P  M  
Sbjct: 523 DAALRPVAVAASSPEGG-----RTVREFLQTHPPVSGPRDGPYGVLETGHSESSPDAMGL 577

Query: 510 -------NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
                  +   + + +L  R +L            +LS+       P+         ++ 
Sbjct: 578 LDPDGLRDERWSAVRALSARASLNVPLRARGPILGVLSVVAAHPGRPYGPRERSLAEELG 637

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI----KNQRFGPL 618
           +      + +   + A++    + +FL+  SHE++TP+T++    + +      Q  G L
Sbjct: 638 QRAAFAIENAELYRKAQESIRARDEFLSIASHELKTPVTSMKLRVQQLTRTLSRQESGQL 697

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
              +     +        +  +V  LLD+S++   +++L  E + L     +    ++  
Sbjct: 698 PVEKVAALLDVFGDQLRRLSHLVEHLLDVSRVNERQVDLRLEDMDLVAVARDVTGHLRGQ 757

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738
                 +     A        D   ++Q+ +N+L+NA+ +  +G  I +  +        
Sbjct: 758 MGRAGCVFEL-VAPTPVLGRWDRLRMEQVMINLLTNAMKYG-AGEPIRMEVSRVGEG-AR 814

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           +R++D GVG+      +    F +          G GLGL + + +V+A+ G   + S P
Sbjct: 815 IRIQDHGVGIPLEAQPRIFDRFERA---ASRNYGGLGLGLFITRRLVEAHGGTIRVESQP 871

Query: 799 AKGTLIEIIFPL 810
            KG    +  PL
Sbjct: 872 GKGATFVVDLPL 883



 Score =  116 bits (290), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 42/433 (9%), Positives = 114/433 (26%), Gaps = 28/433 (6%)

Query: 166 LPIYSRNREFSGFRGF---------GIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSS 216
            P+   +    G   F         GI+    ++            +F  L+ + +    
Sbjct: 73  APLARDDGTRPGGHAFADGEGGIPLGILEAIFLNMGDGVTVVDRHGRFVLLNPMAQQIFG 132

Query: 217 VEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFH 276
                    SQ S    L + + V+            L   +                  
Sbjct: 133 ALPPPEMPVSQWSKYFGLYLPDTVTPYPVETLPLSRALLHGEAVDQAEVYVRNARHPKGL 192

Query: 277 TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-V 335
            + +         G +   +    +  + +   +        E          P     +
Sbjct: 193 WLQVGARVLTDSTGDVYGAASVFRDITAIKQAEAALRA---EEEKFRSLYRYTPAMMHSI 249

Query: 336 YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIA 395
            + G L   +  +L    Y   + +      S     P+         + ++     C  
Sbjct: 250 DAEGRLVSVSEFWLRTLGYSREEVLGRR---SVDFFTPESRRYATEHVLPVFFKTGVCKD 306

Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
                + I       L +      + +     +    +  +  + +  +  +     +L 
Sbjct: 307 VP---YQIVKKNGEVLDVLLSAISERDASGRMVRSLAVLTDVTERKRAEDALAESEKRLR 363

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           +IL+  +    I++R+   +  NR   +LF   ++++  K           +  +     
Sbjct: 364 AILDNANAVFFILDRQERYIFVNREWERLFHRTLQEVAGKSTADIFPGPQAARFHETSQA 423

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLS 572
           + +    + +++      ++     L      +  S           D++E KQ +    
Sbjct: 424 VFTTG--ELVQREECIPLEDGVHTHLTQKFPLIDSSGTLYALCGISTDVTELKQMEL--- 478

Query: 573 HAKKIAEKESSHK 585
             ++   + S   
Sbjct: 479 -GQRFLSEASQAL 490



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 40/342 (11%), Positives = 98/342 (28%), Gaps = 12/342 (3%)

Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
           H+  +L          +      +       + +     +       S         R  
Sbjct: 25  HEATLLTRNGVQESLVDGRHANGEGASLPPCVGRDPPMDHLDDSTGMSAPLARDDGTRPG 84

Query: 309 PSLSAYFDEG--ENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365
               A  + G    +              V  HG     NP    +       ++ ++  
Sbjct: 85  GHAFADGEGGIPLGILEAIFLNMGDGVTVVDRHGRFVLLNPMAQQIFGALPPPEMPVSQW 144

Query: 366 LSTL-LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN-SLAMTFIPFEKANQ 423
                L  P       ++ + L R+     A       ++  R    L +        + 
Sbjct: 145 SKYFGLYLPDTVTPYPVETLPLSRALLHGEAVDQAEVYVRNARHPKGLWLQVGARVLTDS 204

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
             +      +  +    +  +  +  E  +  S+   T   +  I+ EG ++S +    +
Sbjct: 205 TGDVYGAASVFRDITAIKQAEAALRAEEEKFRSLYRYTPAMMHSIDAEGRLVSVSEFWLR 264

Query: 484 LFGYPVEDILRKPFTVFLEQNTPS-VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
             GY  E++L +    F    +      H L       + + +    +   K  ++L + 
Sbjct: 265 TLGYSREEVLGRRSVDFFTPESRRYATEHVLPVFFKTGVCKDVPYQIV--KKNGEVLDVL 322

Query: 543 IIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAEK 580
           +       +S         + D++E K+ ++ L+ ++K    
Sbjct: 323 LSAISERDASGRMVRSLAVLTDVTERKRAEDALAESEKRLRA 364


>gi|92116951|ref|YP_576680.1| multi-sensor hybrid histidine kinase [Nitrobacter hamburgensis X14]
 gi|91799845|gb|ABE62220.1| multi-sensor hybrid histidine kinase [Nitrobacter hamburgensis X14]
          Length = 853

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 103/651 (15%), Positives = 219/651 (33%), Gaps = 46/651 (7%)

Query: 182 GIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG-HSSVEKEKYDIFSQQSPPPHLRMKNKV 240
           GIV       D   +    D  F  +     G H       Y   +  +    +R   +V
Sbjct: 73  GIVRFADRTADDPLMRPIADHAFDGIAVTDSGGHIVYANAAYLTLTGATSMQDVRPVERV 132

Query: 241 SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF 300
                  +     L          +E       D       +   +    T +++    +
Sbjct: 133 FIGNPDVSEAVFRLLKAAREGKRQQEEVRVAAADGAHGRWLRMRVRPLGQTKRHSRYAVW 192

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDD 359
                           +      E +D  P  FF V   G+L Y N +      +   + 
Sbjct: 193 SIADITRDRDRQEDVFQELRHAIEYLDHAPCGFFSVNKAGDLAYVNATLANWLDHDLAEI 252

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA-MTFIPF 418
                G   L     +S + A     +  +          +     N +   A +     
Sbjct: 253 -----GSGGLKLTDVVSGDGAALLTSIIAAPGEVRTEVFDIDLRMRNGKTMPARLYHKLA 307

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
             A+  P       I     +    +R  E+  M+     + T   IA +++ G++   N
Sbjct: 308 FGADGVPGPSRTLVISRARDERVDPQRAAEVRFMRF---FDHTPMAIATVDKSGVVHRAN 364

Query: 479 RAVSKLFG-YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL-DLRQTLEKITLG-STKE 535
              +KL      +    +     + +     ++  +            ++ +  G   + 
Sbjct: 365 ARFAKLAQSLSPDGAASRSILAAVNERDRGQLSAAIHAAAEGQGDIPPVDAMLSGARERW 424

Query: 536 EKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
            +     ++ +    +    + M + +E +  +N+++ ++K+              ++H+
Sbjct: 425 GQFFVTAVVGEDDRDAEAAIVYMLETTERRTLENQINQSQKM-----ESVGQLAGGIAHD 479

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
               L+AI+  ++ + N       +P + +    I ++ N    +V  LL  S+    + 
Sbjct: 480 FNNVLSAIMMANDFLLNAH--KPTDPSFQDIMQ-IKQNANRAAALVRQLLAFSR----RQ 532

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILI-RTSFANNIPRILADLRSVKQIALNILSN 714
            L  + + L + +S+   L++    EK +         ++  + AD+   +Q+ +N++ N
Sbjct: 533 TLQPKVLDLGDTLSDIGMLLKRLIGEK-VTFPGVVHGRDLWPVKADVSQFEQVIVNLVVN 591

Query: 715 AIHFTPSGGQIIISTT--------------HTSNEEVILRVRDTGVGMTNYELEKAMKPF 760
           A    P+GG++ I T                 + + V++ V DTG G+    ++K  +PF
Sbjct: 592 ARDAMPNGGRLAIRTANVAAAEVATFGYKGIPAADYVLVDVSDTGSGIPPDIVDKIFEPF 651

Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
                S +  G+GTGLGL     +V    G  Y+ S   +GT   I  P +
Sbjct: 652 F----STKEVGKGTGLGLSTVYGIVKQTGGFIYVDSKAGEGTTFRIFLPRH 698



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 45/374 (12%), Positives = 91/374 (24%), Gaps = 17/374 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL--KRQNTWYGK 146
            D+ G++   +       G  + + +  R  +   I + D +  +  LL   R+     +
Sbjct: 101 TDSGGHIVYANAAYLTLTGATSMQDV--RPVERVFIGNPDVSEAVFRLLKAAREGKRQQE 158

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                         + +   P+    R  S +  + I  + R  +    + + L     +
Sbjct: 159 EVRVAAADGAHGRWLRMRVRPLGQTKRH-SRYAVWSIADITRDRDRQEDVFQELRHAIEY 217

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPP-----PHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
           L     G  SV K     +   +           + +    LT+  +     L T     
Sbjct: 218 LDHAPCGFFSVNKAGDLAYVNATLANWLDHDLAEIGSGGLKLTDVVSGDGAALLTSIIA- 276

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNS---KESFEYLSHRNHPSLSAYFDEG 318
              E  +     D    N      + Y             S   +  R            
Sbjct: 277 APGEVRTEVFDIDLRMRNGKTMPARLYHKLAFGADGVPGPSRTLVISRARDERVDPQRAA 336

Query: 319 ENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
           E       D  P+    V   G +  AN  F  L +  S D       L+      +   
Sbjct: 337 EVRFMRFFDHTPMAIATVDKSGVVHRANARFAKLAQSLSPDGAASRSILAA--VNERDRG 394

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
             +                 A L   +           +  +  +     +         
Sbjct: 395 QLSAAIHAAAEGQGDIPPVDAMLSGARERWGQFFVTAVVGEDDRDAEAAIVYMLETTERR 454

Query: 438 VDTRINKRKMEIEV 451
                  +  ++E 
Sbjct: 455 TLENQINQSQKMES 468


>gi|28900530|ref|NP_800185.1| sensor protein TorS [Vibrio parahaemolyticus RIMD 2210633]
 gi|260365411|ref|ZP_05777948.1| sensor histidine kinase TorS [Vibrio parahaemolyticus K5030]
 gi|260877477|ref|ZP_05889832.1| sensor histidine kinase TorS [Vibrio parahaemolyticus AN-5034]
 gi|260894852|ref|ZP_05903348.1| TMAO reductase sytem sensor TorS [Vibrio parahaemolyticus Peru-466]
 gi|28808910|dbj|BAC62018.1| sensor protein TorS [Vibrio parahaemolyticus RIMD 2210633]
 gi|308085317|gb|EFO35012.1| TMAO reductase sytem sensor TorS [Vibrio parahaemolyticus Peru-466]
 gi|308090921|gb|EFO40616.1| sensor histidine kinase TorS [Vibrio parahaemolyticus AN-5034]
 gi|308114304|gb|EFO51844.1| sensor histidine kinase TorS [Vibrio parahaemolyticus K5030]
          Length = 988

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 75/242 (30%), Positives = 124/242 (51%), Gaps = 7/242 (2%)

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
           +  AE+ S  KS FLA +SHEIRTP+  ++G + ++ +    P+       YA  I+RSG
Sbjct: 460 RNEAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLMDSGLNPI----QKRYAEIINRSG 515

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
             +L I+ND+LD SKIE+G + +      L + V +   L+   A EK++L      +++
Sbjct: 516 KTLLAILNDVLDYSKIEAGHLEIRRLGFDLHQMVEDTFQLMNSRAQEKQLLFSYHIESDV 575

Query: 695 PRIL-ADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVILRVRDTGVGMTNYE 752
            R    D+  + Q+  N++ NAI FT  G   I +S       +V+  V DTG+G++  +
Sbjct: 576 SRYWKGDVTRISQVLNNLVGNAIKFTEDGEIDIYVSLNPEDESQVLFEVSDTGIGISKKD 635

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
            +     F Q       +  GTGLGL ++K +V+A  G   + S   +G+      PL +
Sbjct: 636 QKTLFDAFTQAEGGLN-QIGGTGLGLAISKRIVEAMGGVLEVDSEEGEGSRFWFSIPLEE 694

Query: 813 TS 814
           + 
Sbjct: 695 SE 696


>gi|254689267|ref|ZP_05152521.1| PAS domain-containing protein [Brucella abortus bv. 6 str. 870]
 gi|256257517|ref|ZP_05463053.1| PAS domain-containing protein [Brucella abortus bv. 9 str. C68]
          Length = 898

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 99/626 (15%), Positives = 208/626 (33%), Gaps = 51/626 (8%)

Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271
           +G      + Y   +  +    +R  ++V +     +     L       L+++E     
Sbjct: 145 RGQIVYANQAYARMTGATDADGIRPLDQVLASEPAASDAIYRLTNAVRDGLSAQEEVRIS 204

Query: 272 QEDFHTINLNQY--TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE-----NLTPE 324
                  N +      +     L+  ++     ++ +         ++            
Sbjct: 205 GGLSRGANGSLAPVWYRIKARALEGGAEFKGALVAWQVADISEERAEQERFFQELQEAIN 264

Query: 325 TVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
            +D  P  FF     G + Y N +               +  L+ ++    ++       
Sbjct: 265 HLDHAPAGFFSANPAGRIIYLNATLAEWLGVDLTQFTPGSLTLNDIVAGSGMA------L 318

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
           +   +++      +     +      SLA+ F    +  +         I  +  +   +
Sbjct: 319 IKAVKAEPGTSRNTVIDLDLIKRNGQSLAVRFYHRVQTARDGMPGTTRTIVLDRAEGDDS 378

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG--YPVEDILRKPFTVFL 501
                   ++      +    IA ++ EG  L TN     +F      + I R+     +
Sbjct: 379 SVAQRSAEVRFTRFFNSAPMAIAAVDAEGHTLRTNARFLDIFSGVVDRDAIDRRVKLENV 438

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF----SSCYSLT 557
                    +                 T+    EE+ +   +                ++
Sbjct: 439 VHERDRETFNKALAAAFAGQASISPVDTVLPGNEERHIRFYMSPVTDLGGEAAEEAAVIS 498

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
             + +E K  +N+++ ++K+              ++H+    LTAII  S+++       
Sbjct: 499 AVETTEQKALENQMAQSQKM-----QAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNH--R 551

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
             +P + +  N I ++ N    +V  LL  S+    +  L  E + L + +++ + ++  
Sbjct: 552 ASDPSFPDIMN-IKQNANRAASLVRQLLAFSR----RQTLRPEVLDLTDVLAD-LRMLLA 605

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT------- 730
               K I ++     ++  + ADL   +Q+A+N+  NA    P GGQI + T        
Sbjct: 606 RLVGKDIELKIDHGRDLWPVKADLGQFEQVAVNLAVNARDAMPEGGQITLRTRNIPAADA 665

Query: 731 -------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
                      + V+  V DTG G+    LEK  +PF          G+GTGLGL +   
Sbjct: 666 AKLHYRDLPEADYVVFEVEDTGTGIPADVLEKIFEPFFTTK----EVGKGTGLGLSMVYG 721

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFP 809
           ++    G  Y  S   KGT  +I  P
Sbjct: 722 IIKQTGGFIYCDSEVGKGTTFKIFLP 747



 Score = 70.4 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/238 (11%), Positives = 66/238 (27%), Gaps = 7/238 (2%)

Query: 319 ENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
           ++L    +D  P    +    G + YAN ++  +T     D I     +  L   P  SD
Sbjct: 125 QDLAHSFMDTQPEGTVISDPRGQIVYANQAYARMTGATDADGIRPLDQV--LASEPAASD 182

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
                   +                 +    +   + +    +A +         +  + 
Sbjct: 183 AIYRLTNAVRDGLSAQEEVRISGGLSRGANGSLAPVWYRIKARALEGGAEFKGALVAWQV 242

Query: 438 VDTRINKRKMEIEVMQLC-SI--LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
            D    + + E    +L  +I  L+    G    N  G I+  N  +++  G  +     
Sbjct: 243 ADISEERAEQERFFQELQEAINHLDHAPAGFFSANPAGRIIYLNATLAEWLGVDLTQFTP 302

Query: 495 KPFT-VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
              T   +   +   +   +           ++   +    +   +     ++     
Sbjct: 303 GSLTLNDIVAGSGMALIKAVKAEPGTSRNTVIDLDLIKRNGQSLAVRFYHRVQTARDG 360



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 47/420 (11%), Positives = 103/420 (24%), Gaps = 38/420 (9%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD--ILHIDPNNHIGDLLKRQNTWYGKT 147
           D  G +   ++   +  G      I   L  V        D    + + ++   +   + 
Sbjct: 143 DPRGQIVYANQAYARMTGATDADGI-RPLDQVLASEPAASDAIYRLTNAVRDGLSAQEEV 201

Query: 148 TL-----WPIEGTNLYVPIDLAALPIYSRNREFSGF-RGFGIVHVNRVDNDPRALGKRLD 201
            +         G+   V   + A  +     EF G    + +  ++    +     + L 
Sbjct: 202 RISGGLSRGANGSLAPVWYRIKARALEGGA-EFKGALVAWQVADISEERAEQERFFQELQ 260

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR------MKNKVSSLTEYYAHKDDVLK 255
           +  +HL     G  S       I+   +    L           ++           ++K
Sbjct: 261 EAINHLDHAPAGFFSANPAGRIIYLNATLAEWLGVDLTQFTPGSLTLNDIVAGSGMALIK 320

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN--NSKESFEYLSHRNHPSLSA 313
             K    TS  + +                     T ++          L        S 
Sbjct: 321 AVKAEPGTSRNTVIDLDLIKRNGQSLAVRFYHRVQTARDGMPGTTRTIVLDRAEGDDSSV 380

Query: 314 YFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLT-KYKSVDDIEIAGGLSTLLD 371
                E       +  P+    V + G+    N  FL +       D I+    L  +  
Sbjct: 381 AQRSAEVRFTRFFNSAPMAIAAVDAEGHTLRTNARFLDIFSGVVDRDAIDRRVKLENV-V 439

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
             +  +         +    +       L     N E  +     P              
Sbjct: 440 HERDRETFNKALAAAFAGQASISPVDTVL---PGNEERHIRFYMSPVTDLGGEAAEEAAV 496

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSI----------LEATSDGIAIINREGIILSTNRAV 481
               E  + +  + +M  +  ++ ++                 I + +    +L TN   
Sbjct: 497 ISAVETTEQKALENQM-AQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSD---LLLTNHRA 552



 Score = 48.5 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 45/134 (33%), Gaps = 12/134 (8%)

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY-LT 514
           S ++   +G  I +  G I+  N+A +++ G    D   +P    L     +    Y LT
Sbjct: 130 SFMDTQPEGTVISDPRGQIVYANQAYARMTGATDAD-GIRPLDQVLASEPAASDAIYRLT 188

Query: 515 EILSLDLRQTLEKITLG---STKEEKLLSLRIIIKKLPFSSC-------YSLTMHDISEW 564
             +   L    E    G         L  +   IK               +  + DISE 
Sbjct: 189 NAVRDGLSAQEEVRISGGLSRGANGSLAPVWYRIKARALEGGAEFKGALVAWQVADISEE 248

Query: 565 KQEKNKLSHAKKIA 578
           + E+ +     + A
Sbjct: 249 RAEQERFFQELQEA 262


>gi|116750263|ref|YP_846950.1| multi-sensor signal transduction histidine kinase [Syntrophobacter
           fumaroxidans MPOB]
 gi|116699327|gb|ABK18515.1| PAS/PAC sensor signal transduction histidine kinase
           [Syntrophobacter fumaroxidans MPOB]
          Length = 716

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 71/411 (17%), Positives = 161/411 (39%), Gaps = 38/411 (9%)

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
            +A     +     +  E V+ +  +  +    ++   ++E  +  I  ++ +G IL  N
Sbjct: 316 VRARTAELSEANEALASEVVERKQAEAALRRSELKYRELVEHANSIILRLDAQGKILFFN 375

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY---LTEILSLDLRQTLEKITLGSTKE 535
                 FG+   +IL +     +   T +        +  +LS     +         + 
Sbjct: 376 EFAQNFFGFREGEILGRQAVGTIVPETETSGRDLASMMRRMLSDPEVYSSN-EYENMRRN 434

Query: 536 EKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
            + + +    K +   +          +DIS            ++  E+ +    +F   
Sbjct: 435 GERVWVAWTNKAIRDGNGRIAEILCIGNDIS-------ARRRIEEELERSNRELQEFAFI 487

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
            SH+++ PL  ++ F + + + RFG   +    +Y   + ++   + +++  LL+ S++ 
Sbjct: 488 ASHDLKEPLRKVMAFGDRL-HSRFGERLDEDGRDYLARMRKAAFRMQNLIESLLNYSRVT 546

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
           +      F  V L+  + E +S ++    E  + I       +P I AD   ++Q+  N+
Sbjct: 547 TKAET--FSTVDLNVLIKEILSDLETSIAENGVRIEVE---RLPIIQADSNQMRQLFQNL 601

Query: 712 LSNAIHFTPSGGQ---IIISTTHTSNE----------EVILRVRDTGVGMTNYELEKAMK 758
           +SNA+ +   G +   + I     +               + V D G+G     L++   
Sbjct: 602 ISNALKY--HGTEAPFVGIRGKKAAPTPGGTGSGGPSWYQVLVEDNGIGFDEKYLDRIFA 659

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           PF ++    +   EGTG+GL + + +++ + G     STP +G+   +  P
Sbjct: 660 PFQRLHG--RDAYEGTGMGLAICRKIMERHGGTLTANSTPGRGSTFIVTLP 708



 Score = 48.5 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/196 (12%), Positives = 52/196 (26%), Gaps = 13/196 (6%)

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN---------HPSLSAYFDEGEN 320
           P    F  + L +   +     L+N  +     LS  N              A     E 
Sbjct: 290 PYNLLFRDLKLGEAALRAANDQLENKVRARTAELSEANEALASEVVERKQAEAALRRSEL 349

Query: 321 LTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
              E V+            G + + N        ++  + +     + T++   + S  +
Sbjct: 350 KYRELVEHANSIILRLDAQGKILFFNEFAQNFFGFREGEIL-GRQAVGTIVPETETSGRD 408

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
               +    SD    + S     ++ N E             +          I  +   
Sbjct: 409 LASMMRRMLSDPEVYS-SNEYENMRRNGERVWVAWTNKAI-RDGNGRIAEILCIGNDISA 466

Query: 440 TRINKRKMEIEVMQLC 455
            R  + ++E    +L 
Sbjct: 467 RRRIEEELERSNRELQ 482



 Score = 41.9 bits (97), Expect = 0.41,   Method: Composition-based stats.
 Identities = 29/247 (11%), Positives = 64/247 (25%), Gaps = 10/247 (4%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR-----QNT 142
            +DA G +   +E      G    +++G +               +  +++R     +  
Sbjct: 364 RLDAQGKILFFNEFAQNFFGFREGEILGRQAVGTIVPETETSGRDLASMMRRMLSDPEVY 423

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
              +       G    V +      I   N          I +            +R ++
Sbjct: 424 SSNEYENMRRNGE--RVWVAWTNKAIRDGNGRI--AEILCIGNDISARRRIEEELERSNR 479

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
           +      I          K   F  +         ++          K           L
Sbjct: 480 ELQEFAFIASHDLKEPLRKVMAFGDRLHSRFGERLDEDGRDYLARMRKAAFRMQNLIESL 539

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
            +      + E F T++LN    K+    L+ +  E+   +     P + A  ++   L 
Sbjct: 540 LNYSRVTTKAETFSTVDLNVL-IKEILSDLETSIAENGVRIEVERLPIIQADSNQMRQLF 598

Query: 323 PETVDKC 329
              +   
Sbjct: 599 QNLISNA 605


>gi|306840523|ref|ZP_07473282.1| PAS domain-containing protein [Brucella sp. BO2]
 gi|306289538|gb|EFM60756.1| PAS domain-containing protein [Brucella sp. BO2]
          Length = 898

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 97/622 (15%), Positives = 199/622 (31%), Gaps = 43/622 (6%)

Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271
           +G      + Y   +  +    +R  + V +     +     L       L+++E     
Sbjct: 145 RGQIVYANQAYARMTGATDADGIRPLDHVLASEPAASDAIYRLTNAVRDGLSAQEEVRIS 204

Query: 272 QEDFHTINLNQY--TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE-----NLTPE 324
                  N +      +     L+  ++     ++ +         ++            
Sbjct: 205 GGLSRGANGSLAPVWYRIKARALEGGAEFKGPLVAWQVADISEERAEQERFFQELQEAIN 264

Query: 325 TVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
            +D  P  FF     G + Y N +               +  L+ ++    ++       
Sbjct: 265 HLDHAPAGFFSANPAGRIIYLNATLAEWLGVDLTQFTPGSLTLNDIVAGSGMA------L 318

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
           +   +++      +     +      SLA+ F    +  +         I  +  +   +
Sbjct: 319 IKAVKAEPGTSRNTVIDLDLIKRNGQSLAVRFYHRVQTARDGMPGTTRTIVLDRAEGDDS 378

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG--YPVEDILRKPFTVFL 501
                   ++      +    IA ++ EG  L TN     +F      + I  +     +
Sbjct: 379 SVAQRSAEVRFTRFFNSAPMAIAAVDAEGHTLRTNARFLDIFSGVVDRDAIDHRMKLENV 438

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDI 561
                    +                 T+    EE+ +   +                 I
Sbjct: 439 VHERDRETFNKALAAAFAGQASISPVDTVLPGNEERHIRFYMSPVTDLGGEAAEEAAI-I 497

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           S  +  + K    +    ++          ++H+    LTAII  S+++         +P
Sbjct: 498 SAVETTEQKALENQMAQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNH--RASDP 555

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
            + +  N I ++ N    +V  LL  S+    +  L  E + L + +++ + ++      
Sbjct: 556 SFPDIMN-IKQNANRAASLVRQLLAFSR----RQTLRPEVLDLTDVLAD-LRMLLARLVG 609

Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT----------- 730
           K I ++     ++  + ADL   +Q+A+N+  NA    P GGQI + T            
Sbjct: 610 KDIELKIDHGRDLWPVKADLGQFEQVAVNLAVNARDAMPEGGQITLRTRNIPAADAAKLH 669

Query: 731 ---HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
                  + V+  V DTG G+    LEK  +PF          G+GTGLGL +   ++  
Sbjct: 670 YRDLPEADYVVFEVEDTGTGIPADVLEKIFEPFFTTK----EVGKGTGLGLSMVYGIIKQ 725

Query: 788 NMGKFYIFSTPAKGTLIEIIFP 809
             G  Y  S   KGT  +I  P
Sbjct: 726 TGGFIYCDSEVGKGTTFKIFLP 747



 Score = 70.4 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/238 (11%), Positives = 66/238 (27%), Gaps = 7/238 (2%)

Query: 319 ENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
           ++L    +D  P    +    G + YAN ++  +T     D I     +  L   P  SD
Sbjct: 125 QDLAHSFMDTQPEGTVISDPRGQIVYANQAYARMTGATDADGIRPLDHV--LASEPAASD 182

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
                   +                 +    +   + +    +A +         +  + 
Sbjct: 183 AIYRLTNAVRDGLSAQEEVRISGGLSRGANGSLAPVWYRIKARALEGGAEFKGPLVAWQV 242

Query: 438 VDTRINKRKMEIEVMQLC-SI--LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
            D    + + E    +L  +I  L+    G    N  G I+  N  +++  G  +     
Sbjct: 243 ADISEERAEQERFFQELQEAINHLDHAPAGFFSANPAGRIIYLNATLAEWLGVDLTQFTP 302

Query: 495 KPFT-VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
              T   +   +   +   +           ++   +    +   +     ++     
Sbjct: 303 GSLTLNDIVAGSGMALIKAVKAEPGTSRNTVIDLDLIKRNGQSLAVRFYHRVQTARDG 360



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 47/420 (11%), Positives = 103/420 (24%), Gaps = 38/420 (9%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD--ILHIDPNNHIGDLLKRQNTWYGKT 147
           D  G +   ++   +  G      I   L  V        D    + + ++   +   + 
Sbjct: 143 DPRGQIVYANQAYARMTGATDADGI-RPLDHVLASEPAASDAIYRLTNAVRDGLSAQEEV 201

Query: 148 TL-----WPIEGTNLYVPIDLAALPIYSRNREFSG-FRGFGIVHVNRVDNDPRALGKRLD 201
            +         G+   V   + A  +     EF G    + +  ++    +     + L 
Sbjct: 202 RISGGLSRGANGSLAPVWYRIKARALEGGA-EFKGPLVAWQVADISEERAEQERFFQELQ 260

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR------MKNKVSSLTEYYAHKDDVLK 255
           +  +HL     G  S       I+   +    L           ++           ++K
Sbjct: 261 EAINHLDHAPAGFFSANPAGRIIYLNATLAEWLGVDLTQFTPGSLTLNDIVAGSGMALIK 320

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN--NSKESFEYLSHRNHPSLSA 313
             K    TS  + +                     T ++          L        S 
Sbjct: 321 AVKAEPGTSRNTVIDLDLIKRNGQSLAVRFYHRVQTARDGMPGTTRTIVLDRAEGDDSSV 380

Query: 314 YFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLT-KYKSVDDIEIAGGLSTLLD 371
                E       +  P+    V + G+    N  FL +       D I+    L  +  
Sbjct: 381 AQRSAEVRFTRFFNSAPMAIAAVDAEGHTLRTNARFLDIFSGVVDRDAIDHRMKLENV-V 439

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
             +  +         +    +       L     N E  +     P              
Sbjct: 440 HERDRETFNKALAAAFAGQASISPVDTVL---PGNEERHIRFYMSPVTDLGGEAAEEAAI 496

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSI----------LEATSDGIAIINREGIILSTNRAV 481
               E  + +  + +M  +  ++ ++                 I + +    +L TN   
Sbjct: 497 ISAVETTEQKALENQM-AQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSD---LLLTNHRA 552



 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 45/134 (33%), Gaps = 12/134 (8%)

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY-LT 514
           S ++   +G  I +  G I+  N+A +++ G    D   +P    L     +    Y LT
Sbjct: 130 SFMDTQPEGTVISDPRGQIVYANQAYARMTGATDAD-GIRPLDHVLASEPAASDAIYRLT 188

Query: 515 EILSLDLRQTLEKITLG---STKEEKLLSLRIIIKKLPFSSC-------YSLTMHDISEW 564
             +   L    E    G         L  +   IK               +  + DISE 
Sbjct: 189 NAVRDGLSAQEEVRISGGLSRGANGSLAPVWYRIKARALEGGAEFKGPLVAWQVADISEE 248

Query: 565 KQEKNKLSHAKKIA 578
           + E+ +     + A
Sbjct: 249 RAEQERFFQELQEA 262


>gi|325680246|ref|ZP_08159808.1| response regulator receiver domain protein [Ruminococcus albus 8]
 gi|324108063|gb|EGC02317.1| response regulator receiver domain protein [Ruminococcus albus 8]
          Length = 1019

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 97/428 (22%), Positives = 179/428 (41%), Gaps = 47/428 (10%)

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI---------INREGIILSTNR--- 479
            ++ E+++ R+  +   +E  ++ +  +     +A          ++ +  I   +    
Sbjct: 327 VVKQEELEQRLRLQNELLEQEKMRTRQDHMITALASDYKSVYYVNLDSDECICYRSEVTP 386

Query: 480 ----------AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
                     +  + F     +++ + +          +    +   L  +    L  +T
Sbjct: 387 EERPQVGDRLSFVEAFTRYANEVVAESYRESF---LQFIAPDNIRRRLEKETIIALRYLT 443

Query: 530 LGSTKEEKLLSLRIIIKK---LPFSSCYSLT---MHDI----SEWKQEKNKLSHAKKIAE 579
           +G   +E    LR+   +                  DI     E   +   LS A   AE
Sbjct: 444 VGKNGQETYEMLRMAGVRHAEDRDDHTVHAVGVGFTDIDGEMRESMAQSRALSDALAAAE 503

Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639
           + S  K+ FL+ +SHEIRTP+ AIIG + +  N    P    +  +Y   I  S N +L 
Sbjct: 504 QASKAKTSFLSSMSHEIRTPMNAIIGLNAIALN---APELTDKTRDYLEKIGSSANHLLS 560

Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI-PRIL 698
           ++ND+LD+S+IESGK  L  E  S  + + +  ++      +K +        ++    +
Sbjct: 561 LINDILDMSRIESGKTVLKNEDFSFSKLLEQINTIFGAQCADKGLDYNCRIIGSVDAHYI 620

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS----NEEVILRVRDTGVGMTNYELE 754
            D   ++Q+ +NIL NA+ FTP GG + ++   T+       + L + DTG+GM++  L 
Sbjct: 621 GDNMKLQQVLINILGNAVKFTPEGGSVALTVERTAHFDSRSTLRLTISDTGIGMSSEYLP 680

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT- 813
           K  + F Q  +S   R   +GLG+ + K +V+   G   + S   KGT   +   L D+ 
Sbjct: 681 KLFETFSQEDSSATNRYGSSGLGMAITKNIVEIMNGNIEVQSEKGKGTTFIVTVTLMDSA 740

Query: 814 ---SHPHD 818
              S P D
Sbjct: 741 YSESDPED 748


>gi|260175349|ref|ZP_05761761.1| putative two-component system, sensor kinase [Bacteroides sp. D2]
 gi|315923581|ref|ZP_07919821.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313697456|gb|EFS34291.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 570

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 96/510 (18%), Positives = 175/510 (34%), Gaps = 49/510 (9%)

Query: 324 ETVDKCPIPFFVYS---HGNLFYANPSFLLLTKYKSVDDIEIAG----------GLSTLL 370
           + +D  P P FV         +Y N      +   S + I                  + 
Sbjct: 85  DILDNLPFPIFVKDITNDFRYYYWNKESAAQSGISSEEAIGHTDYEIYGEERGEKYRHID 144

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
                +     K       D       A    I W  E    +                 
Sbjct: 145 KELIQAGKVYRKEEKYTTPDGITHDTIAVKSIISWEGEKKWLLATR-------------- 190

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLC-------SILEATSDGIAIINREGIILSTNRAVSK 483
                +    +  +R++     +L          L++   G+  I++   +         
Sbjct: 191 ----WDITQLKNYERELVAAKEELEKALKKQKLALKSIDFGLIYIDKNYRVQWEETRQIA 246

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
                   I  K                   + +                 E     +  
Sbjct: 247 SLVKGRRYIPGKICYQTSALRNEPCGQCAFKKAIEQGKIIRHTIRVDDVDFEVTATPVFG 306

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
             K+            +I+E  +    L  AK+ AE+ +  KS FLA +SHEIRTPL AI
Sbjct: 307 DEKETEIIGGLLR-FENITEKLKMDKMLQEAKEKAEESNRLKSAFLANMSHEIRTPLNAI 365

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +GFSE++              E+   I  +  L+L +++D+LD+SKIE+G M   F    
Sbjct: 366 VGFSEMVCQTEEEEE----RKEFVKIISSNNILLLQLIDDILDLSKIEAGTMEFTFAQTD 421

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
           ++E +      +Q   +   + I  +   +   +  D   + Q+ +N  +NA+ FTP G 
Sbjct: 422 INELMEGICRQMQEKNSSPDVQILFTEKADQCMMYTDRIRLSQVIINFTNNALKFTPKGS 481

Query: 724 QIIISTTHTS-NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
            I +        +E+   V+DTG+G+   +++K  + F ++ +      +GTGLGL + +
Sbjct: 482 -IEMGYRIEEAKDEIYFYVKDTGIGIPADKIDKVFERFVKLNSFI----KGTGLGLAICR 536

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
            +V+   G   + S   +G+      P  +
Sbjct: 537 VIVERLGGVIGVESKEGEGSRFWFRIPRSE 566


>gi|146339449|ref|YP_001204497.1| sensor protein [Bradyrhizobium sp. ORS278]
 gi|146192255|emb|CAL76260.1| sensor protein [Bradyrhizobium sp. ORS278]
          Length = 503

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 91/522 (17%), Positives = 188/522 (36%), Gaps = 36/522 (6%)

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYSHGNLF---YANPSFLLLTKYKSVDDIEIAGGLST 368
                   + +    D   + F  +         Y + +   L        +   G    
Sbjct: 2   RGVTQPFPDASVRPEDAHALGFGAWDLDFATGDFYWSATTRKLFGIPQDQPV-TYGAFLA 60

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
           LL A   +   A   +   R   T    S R+        + + +        +  P ++
Sbjct: 61  LLGAQDRAPVEA--AIEHARHQGTWFDMSFRVPN----GGHWIRVLAGVVPGDDGQPRHL 114

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
              GI  +    +  +  + +      SIL+   D + +I+  GII   + A  ++FGY 
Sbjct: 115 R--GIALDIDQEKRLEEALRLREQHFRSILDTVPDAMIVIDGGGIIQFFSAAAERMFGYT 172

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT--LEKITLGSTKEEKLLSLRIIIK 546
            E+ +    +  + +   S    YLT       R    + +I  G  ++     + + I 
Sbjct: 173 EEEAVGLDVSELMPEPDRSRHAGYLTRYHGTRERHIIGIGRIVTGLRRDGTTFPMHLSIG 232

Query: 547 KLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESS--HKSDFLARVSHEIRTPLTA 602
           ++       ++   HD++E +Q + +L   +      S      +  + ++HE+  PL A
Sbjct: 233 EMQSGGKPYFTGFAHDLTEHQQTQARLRELQSELVHVSRLSAMGEMASALAHELNQPLAA 292

Query: 603 IIGF---SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI-SKIESGKMNLH 658
           I  +   S  +      P    +     +           I+  L D  S+ ES      
Sbjct: 293 ISNYMKGSRRLLAGSSDP-NTGKIESAMDRAAEQAIRAGQIIRRLRDFVSRGES-----E 346

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718
               SL + + EA +L    A E+ + +R     +   +LAD   ++Q+ +N+  NA+  
Sbjct: 347 KRVESLSKLIEEAGALGLAGAREQNVQLRFQLNPDADLVLADRVQIQQVLVNLFRNALEA 406

Query: 719 TPSGGQIIIST--THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
                +  ++       ++ + + V DTG G  +  +    K F    ++      G G+
Sbjct: 407 MSHSARRELAATNRRVGDDLIEVAVSDTGTGFHDDVMPNLFKTFFTTKDT------GMGV 460

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
           GL +++++++A+ G+ +  +  A G       P   T   HD
Sbjct: 461 GLSISRSIIEAHGGRMWAENNEAGGATFRFTLPAAPTKVEHD 502



 Score = 57.7 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 37/428 (8%), Positives = 105/428 (24%), Gaps = 34/428 (7%)

Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255
            G       + +               D  +          K       +   +   +  
Sbjct: 2   RGVTQPFPDASVRPEDAHALGFGAWDLDFATGDFYWSATTRKLFGIPQDQPVTYGAFLAL 61

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQY------TKKQYFGTLQNNSKESFEYLSHRNHP 309
                    E +    +      +++          +   G +  +  +           
Sbjct: 62  LGAQDRAPVEAAIEHARHQGTWFDMSFRVPNGGHWIRVLAGVVPGDDGQPRHLRGIALDI 121

Query: 310 SLSAYFDEGENL----TPETVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSVDDIEIAG 364
                 +E   L        +D  P    V   G +  + + +   +  Y   + +    
Sbjct: 122 DQEKRLEEALRLREQHFRSILDTVPDAMIVIDGGGIIQFFSAAAERMFGYTEEEAVG--L 179

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
            +S L+  P  S +           +R  I     +  ++ +                Q 
Sbjct: 180 DVSELMPEPDRSRHAGYLTRYHGTRERHIIGIGRIVTGLRRDGTTFPM---HLSIGEMQS 236

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI--LEATSDGIAIINREGIILSTNRAVS 482
                  G   +  + +  + ++     +L  +  L A  +  + +  E      N+ ++
Sbjct: 237 GGKPYFTGFAHDLTEHQQTQARLRELQSELVHVSRLSAMGEMASALAHEL-----NQPLA 291

Query: 483 KLFGY---PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
            +  Y       +         +  +   M+    + +         +  +   + EK +
Sbjct: 292 AISNYMKGSRRLLAGSSDPNTGKIES--AMDRAAEQAIRAGQIIRRLRDFVSRGESEKRV 349

Query: 540 SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                + KL   +          +  Q + +L+    +   +       L  +    R  
Sbjct: 350 E---SLSKLIEEAGALGLAGAREQNVQLRFQLNPDADLVLADRVQIQQVLVNL---FRNA 403

Query: 600 LTAIIGFS 607
           L A+   +
Sbjct: 404 LEAMSHSA 411



 Score = 41.9 bits (97), Expect = 0.44,   Method: Composition-based stats.
 Identities = 29/244 (11%), Positives = 64/244 (26%), Gaps = 4/244 (1%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G ++  S    +  G    + +G+ + ++      D + H G L +   T      
Sbjct: 152 IDGGGIIQFFSAAAERMFGYTEEEAVGLDVSELMPE--PDRSRHAGYLTRYHGTRERHII 209

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF-GIVHVNRVDNDPRALGKRLDKKFSHL 207
                 T L        + +     +  G   F G  H        +A  + L  +  H+
Sbjct: 210 GIGRIVTGLRRDGTTFPMHLSIGEMQSGGKPYFTGFAHDLTEHQQTQARLRELQSELVHV 269

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
             +      +        +Q        MK     L          +++           
Sbjct: 270 SRL-SAMGEMASALAHELNQPLAAISNYMKGSRRLLAGSSDPNTGKIESAMDRAAEQAIR 328

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
           +               ++K+     +   +     L+     ++   F    +      D
Sbjct: 329 AGQIIRRLRDFVSRGESEKRVESLSKLIEEAGALGLAGAREQNVQLRFQLNPDADLVLAD 388

Query: 328 KCPI 331
           +  I
Sbjct: 389 RVQI 392


>gi|238917141|ref|YP_002930658.1| two-component system, OmpR family, sensor histidine kinase VicK
           [Eubacterium eligens ATCC 27750]
 gi|238872501|gb|ACR72211.1| two-component system, OmpR family, sensor histidine kinase VicK
           [Eubacterium eligens ATCC 27750]
          Length = 496

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 56/279 (20%), Positives = 123/279 (44%), Gaps = 8/279 (2%)

Query: 533 TKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
               +++ +   +            +   +E ++     +     A +    +++F++ V
Sbjct: 219 RPVRRIIDIMANVNAGHNDERIP--LKGYTEIREIAEDFNGIMDKANETDQSRAEFVSNV 276

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHE++TP+T+I   +E +  Q   P+    Y E+   I    +    I+ DLL + +++ 
Sbjct: 277 SHELKTPITSIKVLAESLNTQENVPI--EVYQEFMQDIVTEIDRESKIIEDLLTLVRMDK 334

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS-FANNIPRILADLRSVKQIALNI 711
               L+   V+++E +   +  ++  A +K I +    F   + +I  D   + Q+  N+
Sbjct: 335 TTATLNITSVNMNELLEMTLKRLKPIAQKKNIELLFESFRPVVAQI--DEVKMTQVISNL 392

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           + NAI +    G + +S  +   +   +RV D+G+G+      K  + F ++  ++    
Sbjct: 393 VENAIKYNVDDGWVHVSL-NADYQYFYIRVEDSGIGIPEESQNKIFERFYRVDKARSRET 451

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            GTGLGL + + ++  + G   + S    GT   +  PL
Sbjct: 452 GGTGLGLAIVRNIILLHHGTIKVHSEENIGTTFTMRVPL 490


>gi|254489836|ref|ZP_05103031.1| hypothetical protein MDMS009_167 [Methylophaga thiooxidans DMS010]
 gi|224464921|gb|EEF81175.1| hypothetical protein MDMS009_167 [Methylophaga thiooxydans DMS010]
          Length = 650

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 96/525 (18%), Positives = 202/525 (38%), Gaps = 36/525 (6%)

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIA 363
            R   +         N     +D+ PI    + S G +   NP    L KY   D +   
Sbjct: 139 ERERLASMTGQPLVTNYLDRLLDRVPIGILNLDSKGKILNLNPCAQRLLKYSERDLVSTY 198

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
                +      S    +    L   DR   + +  +       +    MT     K+  
Sbjct: 199 --FYAVFPDTHESQIKDMIAAALSTQDRGH-SGNQTVSFYGPKGKCYFDMTISSLAKSAS 255

Query: 424 FPENMPQNGIEP----EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
            P              E+   R  ++ +     QL  ++ A  + IA +++E      N+
Sbjct: 256 EPILTVILQEVTLKVQEENKRRKIEQALHQSEQQLLLVINAIPELIAYVDKELRYQFNNK 315

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
           A  K FG   + I  +     + + +  ++  Y+ + ++ +   T+      S     ++
Sbjct: 316 AFEKWFGLSRQAICGRVIWDVIGEPSYRIVEKYVRQAMAGN---TVTFEERLSYPNSGVV 372

Query: 540 SLRIIIKK----LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS--DFLARVS 593
            +R               + +   DI++ K ++             S   +  +  ++++
Sbjct: 373 YIRSTYVPNFSETGEVQGFVVLTSDITQSKSDEELEKKHLLELAHTSRMITIGEMSSQLA 432

Query: 594 HEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           HE+  PLT+I  +S   I   +         +     +        +I+++L +  K + 
Sbjct: 433 HELSQPLTSIEAYSRACITLIQKDKTTKEEILSALENVSSQAIRAQEIMHELRNFVKKDD 492

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712
            +     + V ++  ++ AI L++L   E+   +    + ++P + AD   ++QI +N++
Sbjct: 493 SR-----KTVCVNTLINSAIKLLRLEFQEQDPEVELKLSEDLPHVFADRILIEQILINLI 547

Query: 713 SNAIHFTP----SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
            NAI           Q+II  +H  +EEV++ V D+G G++ YE+ K  +PF        
Sbjct: 548 KNAIEAMRVLVAEERQLIIE-SHNQSEEVLVSVHDSGPGLSEYEINKIFEPFYTTKP--- 603

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIF-STPAKGTLIEIIFPLYD 812
              EG G+GL + ++++ ++ G+  +  +T   GT  +   P+ D
Sbjct: 604 ---EGMGMGLAITRSIIYSHGGRLLVEKNTYG-GTTFKFTLPVED 644



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/182 (14%), Positives = 62/182 (34%), Gaps = 23/182 (12%)

Query: 439 DTRINKRKMEIEVMQLCS-------------ILEATSDGIAIINREGIILSTNRAVSKLF 485
                    E+E  +L S             +L+    GI  ++ +G IL+ N    +L 
Sbjct: 128 QRNYATTMAEVERERLASMTGQPLVTNYLDRLLDRVPIGILNLDSKGKILNLNPCAQRLL 187

Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL-DLRQTLEKITLGSTKEEK-LLSLRI 543
            Y   D++   F         S +   +   LS  D   +  +       + K    + I
Sbjct: 188 KYSERDLVSTYFYAVFPDTHESQIKDMIAAALSTQDRGHSGNQTVSFYGPKGKCYFDMTI 247

Query: 544 -IIKKLPFSSCYSLTMHDIS-------EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
             + K       ++ + +++       + ++ +  L  +++      +   + +A V  E
Sbjct: 248 SSLAKSASEPILTVILQEVTLKVQEENKRRKIEQALHQSEQQLLLVINAIPELIAYVDKE 307

Query: 596 IR 597
           +R
Sbjct: 308 LR 309



 Score = 42.3 bits (98), Expect = 0.37,   Method: Composition-based stats.
 Identities = 37/284 (13%), Positives = 81/284 (28%), Gaps = 22/284 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS-DILHIDPNNHIGDLLKRQNTWYGKT 147
           +D     +  ++   K  G     + G  + DV  +  +     ++   +      + + 
Sbjct: 304 VDKELRYQFNNKAFEKWFGLSRQAICGRVIWDVIGEPSYRIVEKYVRQAMAGNTVTFEER 363

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
             +P  G    V I    +P +S   E  GF       + +  +D     K L +     
Sbjct: 364 LSYPNSG---VVYIRSTYVPNFSETGEVQGFV-VLTSDITQSKSDEELEKKHLLELAHTS 419

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
             I  G  S +          S   + R    ++ + +    K+++L   +     +  +
Sbjct: 420 RMITIGEMSSQLAHELSQPLTSIEAYSRA--CITLIQKDKTTKEEILSALENVSSQAIRA 477

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE-------- 319
                E  + +  +   K     TL N++ +          P +     E          
Sbjct: 478 QEIMHELRNFVKKDDSRKTVCVNTLINSAIKLLRLEFQEQDPEVELKLSEDLPHVFADRI 537

Query: 320 -------NLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKS 356
                  NL    ++   +         +   N S  +L     
Sbjct: 538 LIEQILINLIKNAIEAMRVLVAEERQLIIESHNQSEEVLVSVHD 581


>gi|154490985|ref|ZP_02030926.1| hypothetical protein PARMER_00902 [Parabacteroides merdae ATCC
           43184]
 gi|154088733|gb|EDN87777.1| hypothetical protein PARMER_00902 [Parabacteroides merdae ATCC
           43184]
          Length = 576

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 81/376 (21%), Positives = 178/376 (47%), Gaps = 30/376 (7%)

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
            +     +      + +I+ + ++ I  ++R+  IL  N     +     E+++ K  T 
Sbjct: 222 RKSTLADIIQAKKYIEAIVNSITEPIIGLDRDRSILFANDEALTILNLKRENVMGKSATE 281

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----- 554
              +N   ++   + E++  D ++  E + + +  +E     + I   +           
Sbjct: 282 LALKND--LLRRLVRELIQHDKKK--EPLKIYADDKESYFQAKYIPIHVMDGDGRETEYV 337

Query: 555 --SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
              + + +I+E+K+                S K+ F++ +SHE++TP++AI+   +++++
Sbjct: 338 GDVILLKNITEFKEL--------------DSAKTTFISTISHELKTPISAILMSLKLLED 383

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
           +R G + + +    A  I  S + +L+I  +LL ++++E+GK+ L+ +     E +  AI
Sbjct: 384 KRIGDMNDEQIA-LAGSIRESSDRLLEITGELLKMTQVEAGKLQLNPKITKPIELIDYAI 442

Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
              ++ A      I   +   I ++  D   +  +  N+LSNAIH+TP  G+I+I   H 
Sbjct: 443 KANRVQAERFNCHIEVEYPEKISKLFVDSEKIAWVLTNLLSNAIHYTPENGRIVIG-AHQ 501

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
            +++V + V+D G G+     +     + ++P +   + +G+GLGL ++K  V+A+ G  
Sbjct: 502 VDKKVEIFVQDFGKGIDPRYHQSIFDRYFRVPGT---KVQGSGLGLAISKDFVEAHGGTI 558

Query: 793 YIFSTPAKGTLIEIIF 808
            + S   KG+   I F
Sbjct: 559 RVDSEVGKGSTFVITF 574


>gi|27378849|ref|NP_770378.1| two-component sensor histidine kinase [Bradyrhizobium japonicum
           USDA 110]
 gi|27351998|dbj|BAC49003.1| two-component sensor histidine kinase [Bradyrhizobium japonicum
           USDA 110]
          Length = 546

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 104/249 (41%), Positives = 156/249 (62%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I E +Q K     A+  AE  +  KS FLA++SHE+RTPL AI+GFSEV+K++ FG    
Sbjct: 254 IGELEQAKAISDEARHRAESANVAKSRFLAQMSHELRTPLNAILGFSEVMKSEIFGAHAV 313

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
           P Y EY+  I  SG  +L+++N++LD+S+IE+G+  L+ E VSL   V++   L++L A+
Sbjct: 314 PVYKEYSADIHNSGVHLLNLINEILDLSRIEAGRYELNEEAVSLVGIVADCHHLMKLRAS 373

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
            + I I   F   +PR+ AD R+++Q+ LN+LSN+I FTP GG+I +    T++    L 
Sbjct: 374 SRGITIHEVFEQAMPRLWADERAIRQVVLNLLSNSIKFTPQGGEIWLKAGWTASGGQYLS 433

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           VRDTG G+   E+   +  FGQ  NS +   +G GLGLP+AK ++D + G F + S    
Sbjct: 434 VRDTGSGIPEDEIPVVLASFGQGSNSIKSAEQGAGLGLPIAKNLIDLHGGTFTLKSKLRI 493

Query: 801 GTLIEIIFP 809
           GT + + FP
Sbjct: 494 GTEVIVTFP 502


>gi|163867336|ref|YP_001608530.1| sensor histidine kinase protein [Bartonella tribocorum CIP 105476]
 gi|161016977|emb|CAK00535.1| sensor histidine kinase protein [Bartonella tribocorum CIP 105476]
          Length = 821

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 119/656 (18%), Positives = 241/656 (36%), Gaps = 41/656 (6%)

Query: 172 NREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231
               +G                 A  ++          +++    + +E   I   +   
Sbjct: 185 TGVIAGTVAIARFQDISKQQSENARLQKDIAHLLTELRMQRNLLDLIQEPVWIKDCKGKV 244

Query: 232 -PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG 290
               R   ++    E      D+            E+   E      I+  +        
Sbjct: 245 CFINRAFREMIDYREGSDEVGDLFNENTQCKTDETETIFQEH-VHTVIDGERRRFH--LT 301

Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFL 349
            +      +        + +L+           ET+D+      ++     L + N +F 
Sbjct: 302 RITTAEGMAAFARDDSAYENLAHELRYILQSHCETLDQISTAVAIFDTNQKLKFCNHAFK 361

Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
           +L   +S   +E     +  L+  +     A  P      +         L       E+
Sbjct: 362 ILWPLES-SFLESEPSHTLFLERLREKGLIAEHPDWRAWKE--------ELFKAYRQMES 412

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI----LEATSDGI 465
           +  +  +P  +  +   N    G      +    K  +E     L  I    L+  S+G+
Sbjct: 413 NQQIWNLPDGRTVRVVSNPHPQGGVTWLYENLTEKIDLERRYNTLIKIQGETLDKLSEGV 472

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
            +   +G +  +N A+SKL+  P   ++     T      +   +     +         
Sbjct: 473 VVFGMDGRLRLSNPALSKLWSLPYNLLVEGTHITQLQSHCSALTLGQEWDKFTKFITGFA 532

Query: 525 LEKITLGSTKE-EKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
            ++ T     + +  + +   +  LP      LT  ++++       L    +  E    
Sbjct: 533 EKRETYSGRIDLKNDMIIDYTLVPLPDGQ-TMLTFVNVTDTVHVARALQERNEALESADR 591

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
            +++F+  VS+E+RTPLT IIGFS+++++Q FG + N R  EY  +I      +L+IVND
Sbjct: 592 LRNEFVQHVSYELRTPLTNIIGFSDILRDQIFGSI-NERQQEYLGHIHSESGTLLNIVND 650

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703
           +LD++ +++G M L  +PV++ +A+ +A++ V+   N + I +    + ++  I AD + 
Sbjct: 651 ILDLATLDAGIMELDIKPVNIADAMIQAVARVEDRLNGRHITLLQQISPSLNSISADEKR 710

Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
           + QI +N+LSNA++F      I        +  ++  V + G  +    L++  K F   
Sbjct: 711 LHQIFVNVLSNALNFATEASTIEFCVDEQDDN-IVFSVHNEGSDIPEDILDRIFKRF--- 766

Query: 764 PNSQQIR--------GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
            +S            G        L K+ V+ + G   I +   KGT ++  FPL 
Sbjct: 767 -SSHSHHGGRAGAGLGL------SLVKSFVELHGGYVEILTGSGKGTTVKCFFPLS 815



 Score = 45.4 bits (106), Expect = 0.037,   Method: Composition-based stats.
 Identities = 40/383 (10%), Positives = 89/383 (23%), Gaps = 37/383 (9%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKM-IGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144
            W  D  G +  I+    + I        +G    + +     +      + +       
Sbjct: 235 VWIKDCKGKVCFINRAFREMIDYREGSDEVGDLFNENTQCKTDETETIFQEHVHTV---- 290

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN-DPRALGKRLDKK 203
                  I+G      +         R     G   F     +         L   L   
Sbjct: 291 -------IDGERRRFHLT--------RITTAEGMAAFA--RDDSAYENLAHELRYILQSH 333

Query: 204 FSHLHEIKKGHSSVE--------KEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255
              L +I    +  +           + I             +    L            
Sbjct: 334 CETLDQISTAVAIFDTNQKLKFCNHAFKILWPLESSFLESEPSHTLFLERLREKGLIAEH 393

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKK-QYFGTLQNNSKESFEYLSHRNHPSLSAY 314
            +          +  + E    I      +  +           ++ Y +      L   
Sbjct: 394 PDWRAWKEELFKAYRQMESNQQIWNLPDGRTVRVVSNPHPQGGVTWLYENLTEKIDLERR 453

Query: 315 FDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
           ++    +  ET+DK      V+   G L  +NP+   L        +E            
Sbjct: 454 YNTLIKIQGETLDKLSEGVVVFGMDGRLRLSNPALSKLWSLPYNLLVEGTHITQ---LQS 510

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
             S     +    +    T  A     ++ + + +N + + +      +        N  
Sbjct: 511 HCSALTLGQEWDKFTKFITGFAEKRETYSGRIDLKNDMIIDYTLVPLPDGQTMLTFVNVT 570

Query: 434 EPEDVDTRINKR-KMEIEVMQLC 455
           +   V   + +R +      +L 
Sbjct: 571 DTVHVARALQERNEALESADRLR 593


>gi|186473562|ref|YP_001860904.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia phymatum
           STM815]
 gi|184195894|gb|ACC73858.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia phymatum
           STM815]
          Length = 781

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 84/500 (16%), Positives = 175/500 (35%), Gaps = 42/500 (8%)

Query: 338 HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397
            G +   N     +  + + + I     +   L      D    +      + R+   A 
Sbjct: 34  DGTIRTWNRGGERIHGFSAEEAIGKPFDIFHTL-----EDREVGRAAAALDTARSTGRAE 88

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
           +    ++ +     A   +           +    I  +  D R     +     +  ++
Sbjct: 89  SEGWRLRKDGSRFWA-NVVITPLTGDDRRVLGFGKIVRDMTDKRRAHEAVVESERRFRTL 147

Query: 458 LEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           +   +D  I +++ EGI+ + N    ++ GY  ++I+   F+ F   +  +        +
Sbjct: 148 VNGVTDYAIFMLSPEGIVTNWNAGARRIKGYSADEIIGSHFSRFYTPDDAAAGLPQ-RGL 206

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLS 572
                    E        + K     ++I  +   +     ++    DI+E  +    L 
Sbjct: 207 SVAAKEGRFEAEGWRVRNDGKRFWAHVVIDAIRDDNGELIGFAKITRDITERMEANRALE 266

Query: 573 HAKKIAEKES--SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
             +K   +             V+H+    L  + G  E++ ++      +P   +     
Sbjct: 267 ETRKALFQAQKMEAVGKLTGGVAHDFNNVLQILRGNLELLDSRHHR---DPWSRDRIYKA 323

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
             + +    + + LL   +    +  L    ++L  A+     L++  A  + + + T  
Sbjct: 324 IDAVDRGSKLASHLLAFGR----QQPLQPVAINLAAALRGMDDLLR-RALGETVRVETVV 378

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT--------------HTSNEE 736
              +   L D+  ++ + LN+  NA    P GG++ +  +                + + 
Sbjct: 379 GGGLWNTLVDIHQLENVILNLAINARDAMPHGGKLTMELSNAMLDDEYVATVPDLAAGQY 438

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           V+L V DTG GM    LE+A  PF          GEGTGLGL +A   V  + G   I+S
Sbjct: 439 VMLAVTDTGTGMPQDVLERAFDPFFTTKP----EGEGTGLGLSMAYGFVKQSGGHIKIYS 494

Query: 797 TPAKGTLIEIIFPLYDTSHP 816
               GT ++I  P   ++ P
Sbjct: 495 ETGHGTTVKIYLP--RSTQP 512



 Score = 74.3 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 33/312 (10%), Positives = 84/312 (26%), Gaps = 15/312 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR-QNTWYGKT 147
           +   G ++  +    +  G  A + IG    D+   L           L   ++T   ++
Sbjct: 31  LSPDGTIRTWNRGGERIHGFSAEEAIGKPF-DIFHTLEDREVGRAAAALDTARSTGRAES 89

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
             W +         ++   P+   +R   GF    IV                +++F  L
Sbjct: 90  EGWRLRKDGSRFWANVVITPLTGDDRRVLGFGK--IVRDMTDKRRAHEAVVESERRFRTL 147

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHL---RMKNKVSS--LTEYYAHKDDVLKTEKYPLL 262
                 ++        I +  +           +++     + +Y   D      +  L 
Sbjct: 148 VNGVTDYAIFMLSPEGIVTNWNAGARRIKGYSADEIIGSHFSRFYTPDDAAAGLPQRGLS 207

Query: 263 TSEESSLPEQEDFHTI-NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
            + +    E E +    +  ++        +++++ E   +       +     +     
Sbjct: 208 VAAKEGRFEAEGWRVRNDGKRFWAHVVIDAIRDDNGELIGFAKITRDITERMEANRALEE 267

Query: 322 TPETVDKCP--IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEI---AGGLSTLLDAPKLS 376
           T + + +          + G     N    +L     + D            +  A    
Sbjct: 268 TRKALFQAQKMEAVGKLTGGVAHDFNNVLQILRGNLELLDSRHHRDPWSRDRIYKAIDAV 327

Query: 377 DNNAIKPVMLYR 388
           D  +     L  
Sbjct: 328 DRGSKLASHLLA 339



 Score = 70.8 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 47/130 (36%), Gaps = 5/130 (3%)

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
            +  ++ +G I + NR   ++ G+  E+ + KPF +F       V       + +     
Sbjct: 27  AVIGLSPDGTIRTWNRGGERIHGFSAEEAIGKPFDIFHTLEDREVGRAA-AALDTARSTG 85

Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAE 579
             E       K+       ++I  L       L     + D+++ ++    +  +++   
Sbjct: 86  RAESEGWRLRKDGSRFWANVVITPLTGDDRRVLGFGKIVRDMTDKRRAHEAVVESERRFR 145

Query: 580 KESSHKSDFL 589
              +  +D+ 
Sbjct: 146 TLVNGVTDYA 155



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/229 (9%), Positives = 49/229 (21%), Gaps = 15/229 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + +   G +   +    +  G  A ++IG                    L         
Sbjct: 156 IFMLSPEGIVTNWNAGARRIKGYSADEIIGSHFSRFYTPDDAAAGLPQRGLSVAAKEGRF 215

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +   W +          +    I   N E  GF       + R   +     + L++   
Sbjct: 216 EAEGWRVRNDGKRFWAHVVIDAIRDDNGELIGF-----AKITRDITERMEANRALEETRK 270

Query: 206 HLHEIKKGHSSV----------EKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255
            L + +K  +                  +            ++  S    Y A       
Sbjct: 271 ALFQAQKMEAVGKLTGGVAHDFNNVLQILRGNLELLDSRHHRDPWSRDRIYKAIDAVDRG 330

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
           ++    L +     P Q     +                 +      + 
Sbjct: 331 SKLASHLLAFGRQQPLQPVAINLAAALRGMDDLLRRALGETVRVETVVG 379


>gi|87301192|ref|ZP_01084033.1| multi-sensor signal transduction histidine kinase [Synechococcus
           sp. WH 5701]
 gi|87284160|gb|EAQ76113.1| multi-sensor signal transduction histidine kinase [Synechococcus
           sp. WH 5701]
          Length = 667

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 77/447 (17%), Positives = 175/447 (39%), Gaps = 42/447 (9%)

Query: 393 CIAASARLHTIQ-WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV 451
                  L  ++     +  A   +P         N   +     +     N  ++    
Sbjct: 213 TRPVKELLRGVRAIAGGDFEARISLPVGGELGELLNGFNDMASQLEDYDAANIEELTAAQ 272

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
           ++  S++   +DG A+++ EG I+  N    +LF +   ++        L       +  
Sbjct: 273 VKQQSLIATMADGAALLDGEGRIVLVNPTARRLFRWEGRNLEGNELGSELPDVLTMELQG 332

Query: 512 YLTEILSLDLRQTLEKITLGSTKEE-KLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570
            L  ++S +      + + G      +++   +           ++T+ D++        
Sbjct: 333 PLDSLVSGEKDSADVRCSFGEPPRTLRIVLQTVKDAAGESLKGIAMTVQDLTR------- 385

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
                    + ++ +S F++ VSHE+RTPL  I  + E + + R   L      E+    
Sbjct: 386 -------EVELNAAQSRFISNVSHELRTPLFNIKSYVETLHDLR-DQLSEEETQEFLAIA 437

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
           +   + +  +VND+LD+S++ES +     EP+ +  A+ + +   +L A EK + +    
Sbjct: 438 NAETDRLTRLVNDVLDLSRLESDR-TWTLEPMEVRPAMEQTLRNYRLNAEEKGVQLELEV 496

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE--------------- 735
             ++P +  +   + Q+  N++ N + FTP+GG++++      +                
Sbjct: 497 DAHLPGVRGNWDLLLQVFDNLVGNGLKFTPAGGRVMLRAYPWPDSCHLDPANLPALDAPS 556

Query: 736 --------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
                    + + + D+G G++  +  +  + F ++ N+      GTGLGL + + +++ 
Sbjct: 557 CELSSPLPRLRVEIADSGTGISREDQLRIFERFYRVENAVHTEV-GTGLGLSIVRGILEK 615

Query: 788 NMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           +     + S P  GT      PL    
Sbjct: 616 HGTAIKMASEPGVGTTFWFDLPLEQAD 642


>gi|300088078|ref|YP_003758600.1| multi-sensor hybrid histidine kinase [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299527811|gb|ADJ26279.1| multi-sensor hybrid histidine kinase [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 719

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 91/417 (21%), Positives = 156/417 (37%), Gaps = 27/417 (6%)

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS---ILEATSDGIAI 467
           +A+  +     +Q       + +E  + +           V  L     I   + D I  
Sbjct: 173 IAVLIMCLLFLDQERYYQTVDQLEVREKELHEALANSRQTVQILRRYELIAGHSRDIILF 232

Query: 468 INR-EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
           ++  +G I   N+A  + +GY  E++     T      T   +   + +  +  +     
Sbjct: 233 LDATDGRIKEANKAAEEAYGYSREELQALKITDLRAPETLGDVQSQIVKANTDGIL---- 288

Query: 527 KITLGSTKEEKLLSLRIII--KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
             T    ++  +  + +      +         + DI+  K         K  AE  S  
Sbjct: 289 FETQHRRRDGSVFPVEVSSRGADIAGHRQLISVIRDITARKSADETQKQLKAKAEMSSRL 348

Query: 585 --KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
               +  A ++HEI  PLT IIGFSE++  Q   P       E    I R    + DIV 
Sbjct: 349 AVVGEMAAGIAHEINNPLTGIIGFSELLMEQSELP---ENVRENVVIISRESQRIKDIVR 405

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702
            +L  ++  +         V + E +   + L +       I +   +   +P +  D  
Sbjct: 406 RMLTFARQSA----PQKSAVDIHELIDNTLELRKYVLETANIKVIRRYDMGLPWLTVDSG 461

Query: 703 SVKQIALNILSNAIHFTPS---GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKP 759
            ++Q+ LNIL NA H        G+I IST   + + + L  +D G G+T+    K  +P
Sbjct: 462 QMQQVFLNILVNAEHAMKEYHGRGEITISTQ-RAGDRIKLSFKDDGPGITDEVRPKLFQP 520

Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           F          GEGTGLGL L+  +V  + G+  I S   +G    I  P    + P
Sbjct: 521 FFTTKEP----GEGTGLGLSLSLGIVQEHGGEITINSVDGQGAEFVIDLPATLAAEP 573



 Score = 44.6 bits (104), Expect = 0.069,   Method: Composition-based stats.
 Identities = 19/126 (15%), Positives = 46/126 (36%), Gaps = 12/126 (9%)

Query: 89  IDA-HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI-DPNNHIGDLLKRQNTWYGK 146
           +DA  G +KE ++   +  G    ++  +++ D+     + D  + I         +  +
Sbjct: 233 LDATDGRIKEANKAAEEAYGYSREELQALKITDLRAPETLGDVQSQIVKANTDGILF--E 290

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRG-FGIVHVNRVDNDPRALGKRLDKKFS 205
           T     +G+    P++++     SR  + +G R    ++             K+L  K  
Sbjct: 291 TQHRRRDGS--VFPVEVS-----SRGADIAGHRQLISVIRDITARKSADETQKQLKAKAE 343

Query: 206 HLHEIK 211
               + 
Sbjct: 344 MSSRLA 349


>gi|253990975|ref|YP_003042331.1| phosphate regulon sensor protein [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253782425|emb|CAQ85589.1| positive and negative sensor protein for pho regulon (positive an
           negative sensor protein for pho regulon phor)
           [Photorhabdus asymbiotica]
          Length = 445

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 76/406 (18%), Positives = 154/406 (37%), Gaps = 43/406 (10%)

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469
            L +       + +        GI       R  +R++ + + +  S  E+  D I ++ 
Sbjct: 56  WLWLDRSMLPPSGRGGWEPIFYGIYQMQQRNRKRRRELALLIKRFRSGAESLPDAIVMMT 115

Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
            EG I   NR    L G+   +   +     L     +        +LS D  + L    
Sbjct: 116 TEGNIFWCNRLAQHLLGFRWPEDNGQHIFNLLRYPDFN------RYVLSRDFSRPLSIEL 169

Query: 530 LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
                    +  R++           +   D+++ +  +              + + DF 
Sbjct: 170 ----NNGFTVEFRVMPY---SEGQLLMVARDVTQKRTLE--------------NARRDFF 208

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
           A VSHE+RTPLT + G+ E++++Q      N    +  N +      +  +V  LL +SK
Sbjct: 209 ANVSHEMRTPLTVLQGYLEMMQDQDVSGSLN---KKMLNTMQEQTRRMDSLVRQLLQLSK 265

Query: 650 IESGKMNLHFEPVSLDEAVS--EAISLVQLYANEKRIL---IRTSFANNIPRILADLRSV 704
           IE          + ++E V     + +++  A         I    +  + ++  +   +
Sbjct: 266 IEVAPQ------IDMNEIVDVPLMLKVLRQEATALGNECYKINFDISEEL-KVFGNEEQL 318

Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764
           +    N++ NA++ T  G QI +S    S+      V+D G G++   L +  + F ++ 
Sbjct: 319 RSAMSNLVYNAVNHTSKGTQIDVSWKKNSHG-AEFIVKDNGQGISAEHLPRLTERFYRVD 377

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            ++  +  G+GLGL + K  +  +     + S   KG +     P+
Sbjct: 378 KARSRQTGGSGLGLAIVKHALHHHHSHLEVSSEIGKGAIFSFTLPI 423


>gi|164504822|gb|ABY59649.1| BarA [Yersinia ruckeri]
          Length = 865

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 88/335 (26%), Positives = 146/335 (43%), Gaps = 17/335 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           LF Y +   +  P    +               L   +   +             +++ +
Sbjct: 187 LFAYRLMRDVTGPIRNMVNTVDR-----IRRGQLDSRVEGHMLGELNILKNGINSMAMSL 241

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 242 AAYHEEMQQNIDQATSDLRETLEQMEIQNVELGLAKKRAQEAARIKSEFLANMSHELRTP 301

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+     Q       P   +Y   I RS N +L I+ND+LD SK+E+ K+ L  
Sbjct: 302 LNGVIGFT----RQTLKTSLTPTQTDYLQTIQRSANNLLSIINDVLDFSKLEAEKLVLEH 357

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P  L E + E + L+   A+EK + +     N++P  ++ D   ++Q+  N+L NAI F
Sbjct: 358 IPFPLRETLDEVVILLAHTAHEKGLELTMQVNNDVPEQVVGDSMRLQQVMTNLLGNAIKF 417

Query: 719 TPSGGQ-IIISTTHTSNEEVILRVR--DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T +G   I +S    +  ++ L V   DTG+G++  +  +  + F Q   S   R  GTG
Sbjct: 418 TENGNVDIHVSLRSHTRRQIKLAVEIQDTGIGISEQQQSQLFQAFRQADASISRRHGGTG 477

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           LGL + + +V    G     S   +G+       L
Sbjct: 478 LGLVITERLVKEMDGDISFHSELNRGSTFRFHITL 512


>gi|89099786|ref|ZP_01172659.1| hypothetical protein B14911_21793 [Bacillus sp. NRRL B-14911]
 gi|89085533|gb|EAR64661.1| hypothetical protein B14911_21793 [Bacillus sp. NRRL B-14911]
          Length = 1175

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 92/583 (15%), Positives = 202/583 (34%), Gaps = 49/583 (8%)

Query: 231  PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG 290
             PH  +  +++ L +   +    L+T    L TS E      E+    N    +  +   
Sbjct: 635  DPHSTVAERIADLEQELYYTQQTLQTTIEELETSNEELQSANEELIAANEEMQSANEEMH 694

Query: 291  TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLL 350
            ++             +     +   D    L    +       F+ +  N+    P    
Sbjct: 695  SINEELVNVNNEYEQKIKEVTALADDMDNLLISTNI----AAVFLDAELNIRLFTPEAKK 750

Query: 351  LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
            +     +D       +S   +   L ++         + ++           +  + +  
Sbjct: 751  VINVIDMDVGRPFFHISHNFEQASLVEDAEKVVKSFSKIEKEL---------MSKDHKWY 801

Query: 411  LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470
            L   F                    +  + +   +K+++        L+ +   I II++
Sbjct: 802  LMQAF---PYRTSENVMDGVVFTFNDITEIKRFNQKLKLTSN----ALDQSPSRILIIDK 854

Query: 471  EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530
             G I   NR  ++  G   +  + +           +     +   +     +  +    
Sbjct: 855  SGNIEYHNREFAEHEG-KPDSFVGRNIKDLYRDQMDTADFEEIENAIIAK--EVWKGSMS 911

Query: 531  GSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
                        +    +   S     Y   + DI+  K  +  L        +  S   
Sbjct: 912  YPLDGGIARWENVCFLPIEDQSGDVSSYLGIIEDITVHKASEAML-----QKSEMLSAVG 966

Query: 587  DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
               A + HEIR PLT++ GF +++              EY   +      +  I+++ L 
Sbjct: 967  QLAAGIVHEIRNPLTSLKGFLQLMMQTGSYN------KEYTEVMMSEFGRLEAIIDEFLV 1020

Query: 647  ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706
            ++K ++   +L    V++ + + +   L+   A  + I I     + +P+I  + + +KQ
Sbjct: 1021 LAKPKAAVYDL----VNVSKVIQDVCVLLDTQAIMQNISITAVHQDALPKIRGNEKELKQ 1076

Query: 707  IALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
            + +N++ NAI    +GG I+I T     + +++++ D G G+   +L K  +PF      
Sbjct: 1077 VFINMVKNAIEAMENGGTILIETGME-GKNLLVKISDQGKGIPEKQLNKMGEPFYTT--- 1132

Query: 767  QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
               + +GTGLG+ ++  +++ + G     S   KGT  EI  P
Sbjct: 1133 ---KEKGTGLGVMVSFRIIENHKGTLNYASIEGKGTTAEIRIP 1172



 Score = 48.1 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 46/114 (40%), Gaps = 6/114 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGKT 147
           ID  G ++  + E  +  G      +G  + D+        +   I + +  +  W G +
Sbjct: 852 IDKSGNIEYHNREFAEHEGKP-DSFVGRNIKDLYRDQMDTADFEEIENAIIAKEVWKG-S 909

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
             +P++G       ++  LPI  ++ + S + G  I+    V     A+ ++ +
Sbjct: 910 MSYPLDGGIAR-WENVCFLPIEDQSGDVSSYLG--IIEDITVHKASEAMLQKSE 960


>gi|254470389|ref|ZP_05083793.1| TMAO reductase sytem sensor TorS [Pseudovibrio sp. JE062]
 gi|211960700|gb|EEA95896.1| TMAO reductase sytem sensor TorS [Pseudovibrio sp. JE062]
          Length = 964

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 122/687 (17%), Positives = 234/687 (34%), Gaps = 68/687 (9%)

Query: 176 SGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR 235
           +G+ GF  V          AL   L      + E  K   S       + + +      R
Sbjct: 27  TGWLGFSAVEDANDRITQEALPNLL--LAQEISETSKAVVSSLPSLARVQNLEELAQQSR 84

Query: 236 ---MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL 292
                         +  + ++L  +   +  +  +          +   +     +F   
Sbjct: 85  RLSQAQSSIQNKITHLTQREILGPQLNEVNIAANALFDVTMKQEVLMAERVRVSAHFNAS 144

Query: 293 QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH----GNLFYAN-PS 347
              +  + + L+  +   +   +         T D                 +   N   
Sbjct: 145 FTKALTTSDRLTQISRTLVENAYTRSMAAIVRTYDLVEETQEEEQLLAALDGISEDNLDQ 204

Query: 348 FLLLTKYKSVDDIE--IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405
              +T+ + +  +       ++  LD  K+              +R       R  +   
Sbjct: 205 LERMTELRLLSILLTHKLNTVARELDIAKIGQLKQDFAQSWRIIERRL-----RFASDPG 259

Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK---RKMEIEVMQLCSILEATS 462
            +  +  +      +          +  E      +  +   ++      +L S +E  +
Sbjct: 260 RQSEATQLLQELQVETIGSSGADVFSLREQLVRLDKQVESLTKEAAEHSTELTSAVERIT 319

Query: 463 D-------------GIAIINREGIILSTNRAVSKL---FGYPVEDILRKPFTVFLEQNTP 506
                         G+AI    G I     A   L   F      +           +  
Sbjct: 320 SSSQDWINQAIKGSGLAIT--AGQITLVALAAISLLVTFAVVYFYVQGNLLKRLSRLHEG 377

Query: 507 SVMN--------------HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
                               L  +           +  G  +E++   +++  +   + +
Sbjct: 378 MATLASGNLSSTINDYGSDELHTMAKTLEVFRQTAVVRGQLEEQQ---VKVNQELQRYQN 434

Query: 553 CYSLTMHDISEW-----KQEKNK---LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
                + D +E      +Q + +   L  A+K AE+ +  KS FLA +SHEIRTP+  I+
Sbjct: 435 ELEQLVEDRTEKLLEVNQQLEEEAVRLEKARKQAEEANRAKSTFLATMSHEIRTPMNGIL 494

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           G + ++K+ +     N       + I  SGN++L I+ND+LD SKIE+G++     P S+
Sbjct: 495 GTTSLLKDTQL----NTEQQRLTSTIAESGNVLLCILNDILDYSKIEAGQLTFEQIPFSV 550

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG 723
              +   I+L    A EK + +    A+N+P   L D   + Q+  N+LSNAI FT  GG
Sbjct: 551 HTIIERLITLFTPLAQEKDLSLTYHVADNVPDGSLGDPARLYQVLSNLLSNAIKFTEVGG 610

Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
             +  T +++  E+I  V D+G+G+   ++      F Q  +S   R  GTGLGL +   
Sbjct: 611 IQLQVTANSTQSELIFSVIDSGIGIPKDKISSLFDAFSQAEDSTSRRYGGTGLGLAICDK 670

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFPL 810
           ++    G   + S   KG+      P+
Sbjct: 671 LIKGMQGTVSVESELHKGSTFTFTLPM 697


>gi|197119322|ref|YP_002139749.1| PAS domain-containing sensor histidine kinase response regulator
           [Geobacter bemidjiensis Bem]
 gi|197088682|gb|ACH39953.1| sensor histidine kinase response regulator, PAS domain-containing
           protein [Geobacter bemidjiensis Bem]
          Length = 1004

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 90/523 (17%), Positives = 175/523 (33%), Gaps = 42/523 (8%)

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEI 362
                 +      E E       +        V   G + +AN     +      D +  
Sbjct: 360 QVAERKAAEEALRESEERLRVIFETSQAGIIMVDPQGVIRFANKRMAEMFGC-PHDKLIG 418

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
           +   S L        +  ++ ++    ++ C                             
Sbjct: 419 SDYKSHLHPEQCEVGSKLMEKLIRGEMEQAC-----TERRYLCGEHGDFWGYLSGRRLET 473

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAV 481
              +     GI  +  D    +      +M L ++L  +  GI + + E G  +  N+A 
Sbjct: 474 PDGKLQALIGIISDITDRIKAEEARGKALMLLETLLAHSPMGIIVFDGETGSCILLNQAA 533

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
           + +  +  E +L + F           +     E+L+    + LE     +   E  L  
Sbjct: 534 ADISCWGKESLLGRNFRNSASWRDG-GLTAIAEEVLADGGARPLEAQLHTAGGNEVTLRC 592

Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD----FLARVSHEIR 597
            +   ++       +   DI++  + + +  + +  A+  +  K +        ++H+  
Sbjct: 593 HLSRFEVEGKPHLLVLGQDITQEMRLERE--NKRIEAQMLNMQKLESLGVLAGGIAHDFN 650

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
             LT I+G     +     P  +          +++     ++ + LL  ++   G   +
Sbjct: 651 NILTGIVGNISFAQ--LALPAAHKAGAPLLK-AEKACQRAAELASQLLTFAR---GGQPI 704

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
                S+   V E++SLV    N K ++     A+++  I AD   + Q   NI+ NA+H
Sbjct: 705 KK-AFSVKPLVGESLSLVLRGTNVKGVI---DIADDLCVIEADEGQINQAFNNIIINAVH 760

Query: 718 FTPSGGQIII-----------STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
             P GG + +               T    V L   D G G+   +LEK   P+     S
Sbjct: 761 AMPGGGTLTVTGEDAVMEAGNRFGLTQGPYVRLSFSDQGCGIPKADLEKIFDPYFTTKTS 820

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
                 GTGLGL    ++V  + G   + S P KG+   I  P
Sbjct: 821 ------GTGLGLASTHSIVTRHGGMILVDSAPEKGSTFTIYLP 857



 Score = 73.1 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/334 (12%), Positives = 85/334 (25%), Gaps = 11/334 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D  G ++  ++ + +  G    K+IG            +  + + + L R       T 
Sbjct: 392 VDPQGVIRFANKRMAEMFGCPHDKLIGSDYKSHLHPEQCEVGSKLMEKLIRGEMEQACTE 451

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
              + G +      L+   + + + +     G  I  +        A GK L    + L 
Sbjct: 452 RRYLCGEHGDFWGYLSGRRLETPDGKLQALIGI-ISDITDRIKAEEARGKALMLLETLLA 510

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLR---MKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
               G    + E             +     ++ +       A   D   T     + ++
Sbjct: 511 HSPMGIIVFDGETGSCILLNQAAADISCWGKESLLGRNFRNSASWRDGGLTAIAEEVLAD 570

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
             + P +   HT   N+ T + +        +     L      +     +         
Sbjct: 571 GGARPLEAQLHTAGGNEVTLRCHLSRF--EVEGKPHLLVLGQDITQEMRLERENKRIEAQ 628

Query: 326 VDKCP--IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST---LLDAPKLSDNNA 380
           +          V + G     N     +    S   + +         LL A K     A
Sbjct: 629 MLNMQKLESLGVLAGGIAHDFNNILTGIVGNISFAQLALPAAHKAGAPLLKAEKACQRAA 688

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
                L    R                E+   + 
Sbjct: 689 ELASQLLTFARGGQPIKKAFSVKPLVGESLSLVL 722


>gi|285018938|ref|YP_003376649.1| two component system sensor-response regulator hybrid protein
            [Xanthomonas albilineans GPE PC73]
 gi|283474156|emb|CBA16657.1| putative two component system sensor-response regulator hybrid
            protein [Xanthomonas albilineans]
          Length = 1188

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 110/718 (15%), Positives = 232/718 (32%), Gaps = 59/718 (8%)

Query: 147  TTLWPIEG-TNLYVPIDLAALPIYSRNREFSGFRGFGI-VHVNRVDNDPRALGKRLDKKF 204
               + ++   ++Y P  +A           +G RG    +           L        
Sbjct: 335  VLSYRVDDPESMYNPYVVATAASRDGEVWLAGTRGVLDKLDPATGAVRHHMLAMFGIDWP 394

Query: 205  SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL-- 262
              + E  +G       K  +         +R             + +    +    L   
Sbjct: 395  QAIVEDTQGRVWGAGPKGLLRYDPVSGEVMRWGMNDGVDALTLNNTNFATISGDAHLWLF 454

Query: 263  ----TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
                 ++   L      +          ++         +   +L               
Sbjct: 455  SDLGGAQIRDLDGHVLRNIALGTDGLPAEFVANALKPGPQGQPWLLGSYGVLAWNPVRAR 514

Query: 319  ENLTPETVDKCPIPFFVYSHGNLFYAN-----PSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
                P    +    F +     ++ A            T+   +D I+    L  L    
Sbjct: 515  FEPVPGAPRRLLSAFAISDGNVVWLAGVGCLERYLWDGTRLSLLDRIDDGHELPGLAPNG 574

Query: 374  KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE--------NSLAMTFIPFEKANQFP 425
             + D   +  +   R       AS  + +   +           +L              
Sbjct: 575  LVVDGKGVAWLSSVRGLIRVDPASKAIRSYGVHDGLPNQEFAGQTLTQARGGQILGGTTD 634

Query: 426  ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII---NREGIILSTNRAVS 482
              +     +      +       + V +  +++E +  G+ ++   +R+  ++      +
Sbjct: 635  GVVLFEPSQVIPSRRQPPLVIERVSVRRGDALMELSHAGMVVLREGDRDLNVV------A 688

Query: 483  KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE---KLL 539
            +L  +   +     F +         +      + S              T ++   +++
Sbjct: 689  RLLSFYDTESNTYRFRLSGYDTDWIDVGANGERLFSRLPSGYYTLEVQARTADKVWSRVV 748

Query: 540  SLRIIIKKLPFSSCYSLTMHDISEW----------------KQEKNKLSHAKKIAEKESS 583
            ++R  +    + S + L    +                   +       H +++AE+ S 
Sbjct: 749  AMRFHVLPPWWRSTWGLVGWALLALLIVWRLSYLYRRRLRRRNSWQLALHKQEVAEQASL 808

Query: 584  HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
             K+ FLA + HE+RTP+T ++G SE++         +P+   Y   I  +G  +L +VND
Sbjct: 809  AKTRFLATLGHEVRTPMTGVLGMSELLLATPL----DPKQRGYTESIRGAGTHLLRLVND 864

Query: 644  LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILADLR 702
             LD+++IE+G++ L  +P  L + ++E  ++++  A    +      A         D  
Sbjct: 865  ALDLARIEAGRLELDQQPFDLGQLIAELAAMMEPMAQGHGLTFVLDNAMPEQVTATGDAT 924

Query: 703  SVKQIALNILSNAIHFTPSGGQIIISTT-HTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761
             V+QI LN+L+NAI FT  G  + +        + V   V DTG G+   +  +  + F 
Sbjct: 925  RVRQILLNLLNNAIKFTERGS-VQLRVAPLQEFQGVRFEVVDTGPGINAEQQARLFQRFE 983

Query: 762  QIPNSQQ-IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL--YDTSHP 816
            Q    +   R  G+GLGL + + +  A  G+  + S    GT   +  PL    +S P
Sbjct: 984  QADGPRTAARYGGSGLGLAICQELAVAMGGRIDLQSRLGAGTRFVVDLPLPWVPSSLP 1041


>gi|282898637|ref|ZP_06306625.1| Histidine Kinase [Cylindrospermopsis raciborskii CS-505]
 gi|281196505|gb|EFA71414.1| Histidine Kinase [Cylindrospermopsis raciborskii CS-505]
          Length = 623

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 81/260 (31%), Positives = 136/260 (52%), Gaps = 6/260 (2%)

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
           Y +    I   K     L       E+++  K+ FLA  SHEIRTPLT+IIGF+E++  Q
Sbjct: 208 YLIQTQKIQTLKYSYQSLLQFNYNLERKNKLKNQFLANTSHEIRTPLTSIIGFTELLLAQ 267

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
            +      R+ EY   I  SG  +L ++ND+LD+SKIE+ ++ + +E  ++       ++
Sbjct: 268 GYEAE-RERHQEYLQIIQSSGKHLLSLINDILDLSKIEANQLEVQWEVANIPSLCKSVLA 326

Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
           LV+  A +K + ++     ++  +L D   +KQ+ LN+L NAI FT  G  + +      
Sbjct: 327 LVKEKAGDKGLKLQLEINEDVNTLLVDPLRLKQMLLNLLFNAIKFTNVGS-VGLRVVLKD 385

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI---RGEGTGLGLPLAKAMVDANMG 790
           +  +   V DTGVG++  +L    +P+ Q+ N+      +  GTGLGL + K + + + G
Sbjct: 386 S-WLRFTVWDTGVGISQEDLSLLFRPYTQLVNTINTQLDKNHGTGLGLIVTKQLAEIHGG 444

Query: 791 KFYIFSTPAKGTLIEIIFPL 810
              + S   +G+   II PL
Sbjct: 445 SIEVRSQLNQGSEFTIILPL 464


>gi|313677456|ref|YP_004055452.1| integral membrane sensor signal transduction histidine kinase
           [Marivirga tractuosa DSM 4126]
 gi|312944154|gb|ADR23344.1| integral membrane sensor signal transduction histidine kinase
           [Marivirga tractuosa DSM 4126]
          Length = 359

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 61/243 (25%), Positives = 128/243 (52%), Gaps = 6/243 (2%)

Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI-EYANYIDRSG 634
              ++ ++++ +FLA VSHE++TP+ A  GF   + +   G + + +   ++     +S 
Sbjct: 111 DELKRMATYRREFLADVSHELKTPIFAAQGFVYTLID---GAVKDKKVRGKFLKKAAKSL 167

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NN 693
           + +  +VNDLL +S IE+G++ +HFE + L   V +     +   ++K + ++   +   
Sbjct: 168 DGLEMLVNDLLTLSHIEAGEITMHFEEIDLLALVEDVFDQFEGKTDKKNMSLQLDKSYEG 227

Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753
              ++AD + + Q+ +N++SNAI ++    +I++        EV + ++D G G++   +
Sbjct: 228 PINVIADYQRIYQVIVNLISNAIKYSDENTEIVVGFEINQK-EVTIAIQDHGAGISPEHI 286

Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
           ++  + F +I  S+     GTGLGL + K +++A+     + ST  KG+L     P+   
Sbjct: 287 KRIFERFYRIDKSRSKERGGTGLGLAIVKHIIEAHGSSVSVTSTVGKGSLFSFKLPVEKE 346

Query: 814 SHP 816
             P
Sbjct: 347 PEP 349


>gi|171779216|ref|ZP_02920187.1| hypothetical protein STRINF_01064 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282272|gb|EDT47699.1| hypothetical protein STRINF_01064 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 552

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 64/368 (17%), Positives = 151/368 (41%), Gaps = 32/368 (8%)

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
             +  +  +  +  +I+    +GI +++ +  ++S N A  +LF      +  K      
Sbjct: 214 KQEALLNQKKEEFDTIISKIKEGIILLDAKCQVISINDAAQQLFQTDQTCL-GKDILQIT 272

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK-LPFSSCYSLTMHD 560
              +        + +        +         +++   + I         +   + + D
Sbjct: 273 RDLSFHKWLK--SGLAGHKQEGIIHF-------DKESYKVLIRPILFDGHVTGLVILLFD 323

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           ++E  Q +                + +F A VSHE++TPL  I G+SE++ N   G + +
Sbjct: 324 VTEQLQIE--------------QLRHEFTANVSHELKTPLHVISGYSEMLVN---GMVSS 366

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
                +A  I +    ++ +V D++++S ++     +  E + +       +  +   A+
Sbjct: 367 EDVPYFAGKIYKESKRMVQLVEDIINLSHLDETD-QVPMETLDIYAIAKNVLDSLSTKAS 425

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
           +++I +  +       +L +   +  +  N+  NAI +    G + ++ T +  + V L 
Sbjct: 426 QRQIHLHLTGQPT--MMLGNPALIHSVLYNLCDNAITYNRDKGSVEVTIT-SDEKYVFLT 482

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           ++DTG+G+   E E+  + F ++  S+  +  GTGLGL + K  +  +     + S    
Sbjct: 483 IKDTGLGIPKEEQERIFERFYRVDKSRSRKVGGTGLGLSIVKHALKLHEATIQVRSQENI 542

Query: 801 GTLIEIIF 808
           GT + + F
Sbjct: 543 GTQMLLTF 550


>gi|251800109|ref|YP_003014840.1| GAF sensor hybrid histidine kinase [Paenibacillus sp. JDR-2]
 gi|247547735|gb|ACT04754.1| GAF sensor hybrid histidine kinase [Paenibacillus sp. JDR-2]
          Length = 891

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 77/259 (29%), Positives = 132/259 (50%), Gaps = 8/259 (3%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E ++ K +L    +     S +KS+FLA +SHE+RTPL +++  S ++     G L N  
Sbjct: 472 ELEKTKTQLEEKARQLSLSSQYKSEFLANMSHELRTPLNSLLILSNILATNTEGNL-NDH 530

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
            ++YA  I +SGN +L ++ND+LD++K+E+GK++L    V L E    A       A +K
Sbjct: 531 QVKYAYTIHQSGNDLLQLINDILDLAKVEAGKIDLVHGKVCLHEISEFAEQQFLPVARQK 590

Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-----TSNEE 736
            +  +T    ++P+ +  D + + QI  N+LSNA  FT  G ++     H      +   
Sbjct: 591 GLSFKTVVDADLPQTLYTDEQRLMQIIKNLLSNAFKFTERG-EVKFHIHHAQSGSRAKGG 649

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           +   + DTG+G+   + E   + F Q   +   +  GTGLGL ++  M     G  ++ S
Sbjct: 650 IAFSIIDTGIGIPKEKQELIFQAFQQADGTTNRKYGGTGLGLSISINMAQLLGGAIHVTS 709

Query: 797 TPAKGTLIEIIFPLYDTSH 815
            P KG++  +  P  + S 
Sbjct: 710 VPGKGSVFTLTLPSEEASE 728


>gi|325927769|ref|ZP_08188997.1| Hpt sensor hybrid histidine kinase [Xanthomonas perforans 91-118]
 gi|325541970|gb|EGD13484.1| Hpt sensor hybrid histidine kinase [Xanthomonas perforans 91-118]
          Length = 754

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 72/250 (28%), Positives = 120/250 (48%), Gaps = 10/250 (4%)

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + + +L  AK+ AE  +  K +FLA +SHEIRTPL  II   E+I + +          +
Sbjct: 77  ELEQELLRAKQAAEAATLAKGEFLATMSHEIRTPLNGIIPMLELISSGQLSV----DQRD 132

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
                  S   +L IV+D+LD SK+E+ K+ L     +L E +   I L+Q  A  +++ 
Sbjct: 133 MLQTATGSSLQLLRIVDDILDYSKLEANKLELEITTFNLRELLDGVIQLLQRTAEGRQLR 192

Query: 686 IRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH----TSNEEVILR 740
           +      ++   +  D   ++Q+  N++ NAI FT  G  + I         +   +  +
Sbjct: 193 LSLDIEPSVRLLVRGDPIRLRQVLGNLIGNAIKFTERGS-VDIQLRRLGETRAQHLLRFQ 251

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           VRDTG+G+   +  +  + F Q   S      GTGLGL + K ++D   G+  + S P +
Sbjct: 252 VRDTGIGIAPDQQARLFRSFAQADASTTRLYGGTGLGLAICKRIIDLMGGRIGVESEPGR 311

Query: 801 GTLIEIIFPL 810
           G+      PL
Sbjct: 312 GSTFWFEIPL 321


>gi|317051957|ref|YP_004113073.1| ATPase ATP-binding domain-containing protein [Desulfurispirillum
           indicum S5]
 gi|316947041|gb|ADU66517.1| ATP-binding region ATPase domain protein [Desulfurispirillum
           indicum S5]
          Length = 378

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 101/372 (27%), Positives = 174/372 (46%), Gaps = 16/372 (4%)

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYP------VEDILRKPFTVFLEQNTPS 507
           L  I+E ++  + +++REG IL TN     L G         E IL    T  L+    +
Sbjct: 10  LHHIMERSAMAVLVLDREGRILETNSYAKSLVGRDILRLFLSEVILDFSSTFCLKSCLQN 69

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDI-SEWKQ 566
             + YL  + S+D    L         EE    L I  +     +     M D+  E   
Sbjct: 70  SKDSYLLNLPSIDG---LAHTLYFRFYEEAEYILAIGEQHHEEINLLRKNMIDLNHELGN 126

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
               L       EK +  K+ FL   +H++R P+  I+  S+ +  + F  L +  +I +
Sbjct: 127 ANRDLQKKHAELEKLNELKNQFLGMAAHDLRNPIGTIMTLSDFLLEEAFEHLSSE-HIHF 185

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
              I  S   +L+++NDLLDI+KIE+G+M L+  PV+L+  + + ++  +  A +KR+ +
Sbjct: 186 LTMIRSSSGFMLNLLNDLLDIAKIEAGRMGLNITPVNLETLIEKTLAFQRFQARKKRVEL 245

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
             S     P +LAD   ++Q+  N+L+NAI F+P  G++ ++    S   + + V D G 
Sbjct: 246 VFSCYEQHPMVLADSLKIEQVLQNLLTNAIKFSPPEGKVTVNL-FGSQGHLTVAVTDQGP 304

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+   +L    KPF +         +GTGLGL + + ++ A+ G  ++ S P +GT    
Sbjct: 305 GIPADQLSNIFKPFSRDVPPAPEGEKGTGLGLSIVQKIILAHRGSIWVESKPGEGTSFLF 364

Query: 807 IFPLYDTSHPHD 818
                  + PH+
Sbjct: 365 AL----QAQPHE 372


>gi|197120207|ref|YP_002140634.1| sensor histidine kinase [Geobacter bemidjiensis Bem]
 gi|197089567|gb|ACH40838.1| sensor histidine kinase [Geobacter bemidjiensis Bem]
          Length = 352

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 67/357 (18%), Positives = 149/357 (41%), Gaps = 30/357 (8%)

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           +LE    G+  ++  G +L  N    +L       +L +   +        +       +
Sbjct: 12  LLERLDCGVVHLDDTGKVLLVNSKAEELLHVQRGRVLGRRVDML------PLRTPLYRVL 65

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKK 576
                   +E        E  ++ +R               + D++              
Sbjct: 66  SEDSQDAPVEMSL-----EGTVIQVRSFGLPAGCGGGELYQLRDVT-------------- 106

Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
              KE   + +F+A ++H++++PLT I+G+ + +  ++     +     +   +D+S   
Sbjct: 107 AERKERRQREEFVAMMTHDLKSPLTVIMGYIQALVGEK--AKIDASLHLFLGEMDKSSAK 164

Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696
           +L +++D+LD  ++E+G + +      +   +       +  A       ++   + IP 
Sbjct: 165 MLSMIDDVLDAYRLEAGLLQIDRCRCDIRPLLEGCSRDGEREAAVHGSSFQSELCDEIPP 224

Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKA 756
           +  D + + ++  N++ NA+ FTP  G I  S+       + ++V DTG+G+   EL + 
Sbjct: 225 LELDSKQISRVFANLIGNAVKFTPRRGTITFSSEVRD-GFLRVQVADTGIGIPPEELPRI 283

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
              + +   +     +GTGLGL ++KA+V+A+ G   + ST  KG+   ++ PL + 
Sbjct: 284 FNKYFRAQGA--HGFKGTGLGLTISKAIVEAHGGSIGVESTAGKGSRFSVLLPLREE 338


>gi|169335485|ref|ZP_02862678.1| hypothetical protein ANASTE_01899 [Anaerofustis stercorihominis DSM
            17244]
 gi|169258223|gb|EDS72189.1| hypothetical protein ANASTE_01899 [Anaerofustis stercorihominis DSM
            17244]
          Length = 1313

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 76/238 (31%), Positives = 114/238 (47%), Gaps = 7/238 (2%)

Query: 575  KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
            K  ++  S  KSDFL+R+SHEIRTP+ AIIG + +   +           EY   I  S 
Sbjct: 930  KSRSDSASKAKSDFLSRMSHEIRTPMNAIIGMTNIAMEENGLKNST---KEYLEKISTSS 986

Query: 635  NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
              +L I+ND+LD+S+IESGKM L     SL   + E  +L++  A +K +        N 
Sbjct: 987  EYLLSIINDILDMSRIESGKMKLSPSNFSLTNLIDEVETLIRPQAEDKELNFNVKANVND 1046

Query: 695  PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS----NEEVILRVRDTGVGMTN 750
              +  D   + QI +N+L NAI FT S G I++            +V   V+D G+G+++
Sbjct: 1047 DVLYGDYMRINQILINLLGNAIKFTQSKGNILLCVREEDYNDKQSKVTFIVKDDGIGISS 1106

Query: 751  YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
               E+    F Q  +   I   GTGLGL +   +V        + S   KG+  +   
Sbjct: 1107 ENKERVFHAFEQAEDDTSIHYGGTGLGLAICNNLVKLMGSNIELESDLGKGSTFKFTL 1164


>gi|197117892|ref|YP_002138319.1| sensor histidine kinase response regulator lipoprotein, HAMP/Hpt
           domain-containing protein [Geobacter bemidjiensis Bem]
 gi|197087252|gb|ACH38523.1| sensor histidine kinase response regulator lipoprotein, HAMP and
           Hpt domain-containing protein [Geobacter bemidjiensis
           Bem]
          Length = 818

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 75/248 (30%), Positives = 124/248 (50%), Gaps = 10/248 (4%)

Query: 565 KQEKNKLSHAKKI---AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           +Q +  L   ++    A+  +  KSDFLA++SHEIRTP+  ++G +E++ N         
Sbjct: 163 RQLEESLEEVRRAMESAQSANRAKSDFLAQMSHEIRTPMYGVLGMTELLLNTYLSK---- 218

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
               +   +  SG  +L I+N++LD SKIE+G+M L   P  L +  ++A+++    A  
Sbjct: 219 EQARFVESVRCSGEALLGIINNILDFSKIEAGRMELEMIPFDLHQLTADAVAMFADDAAR 278

Query: 682 KRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-TSNEEVIL 739
           K I +       +P     D   ++Q+ +N+L NA+ FTP G  + +S +       V +
Sbjct: 279 KGIALSCRIEPGLPVMFQGDPGRLRQVMVNLLGNAVKFTPEGA-VTLSVSLVRRPALVRV 337

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V DTG+G++    E+    F Q   S   R  GTGLGL +AK + +   G   + S P 
Sbjct: 338 TVEDTGIGISREAQERIFDHFAQGDESMTRRYGGTGLGLAIAKQLTELMGGGMELSSEPG 397

Query: 800 KGTLIEII 807
           KG+     
Sbjct: 398 KGSSFSFT 405


>gi|89072878|ref|ZP_01159435.1| sensor protein LuxQ [Photobacterium sp. SKA34]
 gi|89051400|gb|EAR56855.1| sensor protein LuxQ [Photobacterium sp. SKA34]
          Length = 576

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 93/377 (24%), Positives = 167/377 (44%), Gaps = 26/377 (6%)

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
                +  +L++  DGI I    G  +S   A              +    ++       
Sbjct: 83  ATRESIQQLLDSLVDGIYI---SGCHISIYPA--DNINISGSYSSGR-LQQWIPPADLDS 136

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP------FSSCYSLTMHDIS 562
            N             TL    + +  +  +L++RI  K           + +        
Sbjct: 137 TNSLWDI-----GEHTLWINIINNRGKIGVLAVRIACKDDRLPAIQKHMALFCELFRSAI 191

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
             +   N+   AKK AE       DFLA ++HE+RTPL  ++G +E++++    PL N +
Sbjct: 192 GRQITFNQAIDAKKRAEDSEQSTRDFLAMINHELRTPLNGLLGSAELLQDT---PLDNDQ 248

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                  ++ SG L+  I+NDLLD SKI +G + L  +P        +   +    ++EK
Sbjct: 249 QK-LLTTLNHSGELLRAIINDLLDYSKINAGMLELIEKPFDCHLLAVKLEDIFTHRSHEK 307

Query: 683 RILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-SNEEVILR 740
           R+     +++++P++ + D   +KQI +N++SNAI FTP+G    +       N+++   
Sbjct: 308 RLDFNIYYSHDLPKVFIGDEDRIKQIFVNLISNAIKFTPAG---FVHAKLWWHNKQLQFT 364

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V+D+G G+ + +  K  KPF Q+  + +   EGTGLGL + K + +   G   + S+  +
Sbjct: 365 VKDSGCGIDHSDQHKLFKPFSQVDITSKRSHEGTGLGLVICKQLCEQMGGSIRVESSLGR 424

Query: 801 GTLIEIIFPLYDTSHPH 817
           G    +  PL  + H H
Sbjct: 425 GACFNVSLPLPISDHTH 441


>gi|289663864|ref|ZP_06485445.1| two-component system sensor protein [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 769

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 71/250 (28%), Positives = 120/250 (48%), Gaps = 10/250 (4%)

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + + +L  AK+ AE  +  K +FLA +SHEIRTPL  II   E+I + +          +
Sbjct: 92  ELEQELLRAKQAAEAATLAKGEFLATMSHEIRTPLNGIIPMLELISSGQLSL----DQRD 147

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
                  S   +L IV+D+LD SK+E+ K+ L     +L E +   + L+Q  A  +++ 
Sbjct: 148 MLQTATGSSLQLLRIVDDILDYSKLEANKLELEITTFNLRELLDGVVQLLQRTAEGRQLR 207

Query: 686 IRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH----TSNEEVILR 740
           +      ++   +  D   ++Q+  N++ NAI FT  G  + I         +   +  +
Sbjct: 208 LSLDIEPSVRLLVRGDPIRLRQVLGNLIGNAIKFTERGS-VDIQLRRLGETRAQHLLRFQ 266

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           VRDTG+G+   +  +  + F Q   S      GTGLGL + K ++D   G+  + S P +
Sbjct: 267 VRDTGIGIAPDQQARLFRSFAQADASTTRLYGGTGLGLAICKRIIDLMGGRIGVESEPGR 326

Query: 801 GTLIEIIFPL 810
           G+      PL
Sbjct: 327 GSTFWFEIPL 336


>gi|255658208|ref|ZP_05403617.1| sensor histidine kinase [Mitsuokella multacida DSM 20544]
 gi|260849517|gb|EEX69524.1| sensor histidine kinase [Mitsuokella multacida DSM 20544]
          Length = 434

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 65/373 (17%), Positives = 149/373 (39%), Gaps = 57/373 (15%)

Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
             + + +G +L+  RA  ++                           ++ + ++    + 
Sbjct: 85  FYVFDEDGRLLNFARASFRI-------------------------EPFILDTIAQGQVEP 119

Query: 525 LEKITLGS--TKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIA 578
            E        T+  +   + +  +++               D++       K ++A    
Sbjct: 120 GEVRVFSKPGTENTRKARIMLTAQQVRDDEGDATQTVYVGKDVTAMYNGMEKATYALAFL 179

Query: 579 -----------------------EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
                                   +    +  F A  SHE+RTPL  ++  +E+++N   
Sbjct: 180 GAIALIIATIVGHLLSGKAMIPLRQAYEKQRQFAADASHELRTPLAVVMASAELLQNDP- 238

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
             + +P   +  + +      +  +V+DLL +++ ++  + L  +  +L   + +   L+
Sbjct: 239 -SIKSPFLRQVIDDVRDEVKKMTKLVSDLLVVARSDNKALKLKPQKFNLSALIEQTARLM 297

Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
           Q  A++K+I ++      +  I AD + ++Q+ L ++ NA+ +TP GG++ +    T   
Sbjct: 298 QPLADQKKIDLQAEHLPKV-EIQADEQKIRQLVLILVDNAVKYTPDGGKVSVRYESTEKG 356

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
           +V   V DTG+G+   +  K    F ++  ++     G GLGL +A+ +V  + G+ +I 
Sbjct: 357 KVRFAVSDTGIGIAKEDQAKVFDRFYRVDKARSREMGGNGLGLAIAQEIVHLHKGRIWIQ 416

Query: 796 STPAKGTLIEIIF 808
           S   KGT   +  
Sbjct: 417 SELGKGTTFFVEL 429


>gi|192293087|ref|YP_001993692.1| PAS/PAC sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris TIE-1]
 gi|192286836|gb|ACF03217.1| PAS/PAC sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris TIE-1]
          Length = 508

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 82/527 (15%), Positives = 194/527 (36%), Gaps = 31/527 (5%)

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDIEIA 363
                  S      +    + +D   +  +  +        + +   L    +   +   
Sbjct: 1   MTEPAPPSTELLARDRRLQQGIDGYGVGTWELNLATQELACSATARKLLGVPADASLTYD 60

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
             +S  L  P   +  A+  +         I     ++ +      S  +          
Sbjct: 61  TFIS--LVDPDDREQIAL-ALQQSIEHGDKIDV---MYRVAEKDRPSHWL--RARGGVVH 112

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
                   GI  +    ++ ++++ ++  QL SIL+   D + +I+  GI+   +RA  +
Sbjct: 113 EDGASYLCGIVLDIDQQKVLEQELRLQQGQLRSILDTVPDAMILIDGRGIMRFFSRAAER 172

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT--LEKITLGSTKEEKLLSL 541
           +FG    + + +  +V + +   +  ++Y+    +   R    + +I  G  K+     +
Sbjct: 173 MFGMSEREAIGQNISVLMPRPDATRHDNYIDRYNNTGERHIIGIGRIVTGRRKDGSTFPI 232

Query: 542 RIIIKKLP--FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS--HKSDFLARVSHEIR 597
            + I ++       ++  + D++E++Q + +L   +      S      +  + ++HE+ 
Sbjct: 233 HLSIGEMESGGERYFTGFIRDLTEYQQTQARLHELQAELVHVSRLTAMGEMASALAHELN 292

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYI--EYANYIDRSGNLVLDIVNDLLDI-SKIESGK 654
            PL+AI  + +  +    G                         I+  L D  ++ ES  
Sbjct: 293 QPLSAISNYMKGSRRLLAGSTDPNTVKIESAMERAAEQALRAGQIIRRLRDFVARGES-- 350

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714
                   SL + + EA +L    A E+ +++R +       +L D   ++Q+ +N+  N
Sbjct: 351 ---EKRVESLAKLIEEAGALGLTGAREQGVVLRFNLDPAHDLVLVDRVQIQQVLVNLFRN 407

Query: 715 AIHFTPSGGQIIIST--THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           A+    +  +  +S      +++ V + V DTG G+      K  + F     +      
Sbjct: 408 ALEAMANSDKKELSAGNARVADDMVEVTVSDTGSGLPEQVKAKLFQTFFTTKET------ 461

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819
           G G+GL +++++++A+ G+ +  +  A G       PL       D 
Sbjct: 462 GMGVGLSISRSIIEAHGGRMWADTNSAGGATFRFTLPLAPVGDLTDA 508



 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/211 (7%), Positives = 47/211 (22%), Gaps = 8/211 (3%)

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE--YLS 304
               D                 +         +   +  +   G +  +         L 
Sbjct: 66  VDPDDREQIALALQQSIEHGDKIDVMYRVAEKDRPSHWLRARGGVVHEDGASYLCGIVLD 125

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIA 363
                 L       +      +D  P     +   G + + + +   +      + I   
Sbjct: 126 IDQQKVLEQELRLQQGQLRSILDTVPDAMILIDGRGIMRFFSRAAERMFGMSEREAIGQN 185

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
             +S L+  P  + ++          +R  I     +   + +                +
Sbjct: 186 --ISVLMPRPDATRHDNYIDRYNNTGERHIIGIGRIVTGRRKDGSTF---PIHLSIGEME 240

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
                   G   +  + +  + ++     +L
Sbjct: 241 SGGERYFTGFIRDLTEYQQTQARLHELQAEL 271



 Score = 39.2 bits (90), Expect = 3.1,   Method: Composition-based stats.
 Identities = 31/244 (12%), Positives = 63/244 (25%), Gaps = 16/244 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN----NHIGDLLKRQNTWY 144
           ID  G ++  S    +  G    + IG  +  +        +    +   +  +R     
Sbjct: 157 IDGRGIMRFFSRAAERMFGMSEREAIGQNISVLMPRPDATRHDNYIDRYNNTGERHIIGI 216

Query: 145 GKTTL-WPIEGTNLYVPIDLA-ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
           G+       +G+    PI L+         R F+GF     +         +A    L  
Sbjct: 217 GRIVTGRRKDGSTF--PIHLSIGEMESGGERYFTGF-----IRDLTEYQQTQARLHELQA 269

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
               L  + +  +  E           P   +    K S      +   + +K E     
Sbjct: 270 ---ELVHVSRLTAMGEMASALAHELNQPLSAISNYMKGSRRLLAGSTDPNTVKIESAMER 326

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
            +E++    Q      +     + +          E    L                +  
Sbjct: 327 AAEQALRAGQIIRRLRDFVARGESEKRVESLAKLIEEAGALGLTGAREQGVVLRFNLDPA 386

Query: 323 PETV 326
            + V
Sbjct: 387 HDLV 390


>gi|144901017|emb|CAM77881.1| sensor protein [Magnetospirillum gryphiswaldense MSR-1]
          Length = 906

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 73/330 (22%), Positives = 157/330 (47%), Gaps = 10/330 (3%)

Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
             + F    +    +   +       S +      +L+  +     ++ + S  + +++ 
Sbjct: 577 AERAF---TQWAEHRGIDLDTLTEADSELVDMAETLLAGAIGAASARVMVASVSKGEVVG 633

Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
           L  +++ L  +S            +    +L  A +   +    K DF++ V+HE+RTPL
Sbjct: 634 LDEVMEILDEASQVIAYSQ---RLEAATAELKAANERLTELDRMKDDFISTVTHELRTPL 690

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
           T+I  FSE++ +     +   + +E+   I +    +  ++N +LD++K+ESG+M  HF 
Sbjct: 691 TSIRSFSEILFDNPG--IDEAQRLEFLAIIIKESERLTRLINQVLDMAKMESGRMTWHFV 748

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720
            V   + + ++I+       ++R+ + T  A+++P +  D     Q+ +N+LSNA+ F  
Sbjct: 749 MVEPRQLIQDSIAATGALFEDRRVTLETRLADDLPPLRTDADKFMQVVINLLSNAVKFVE 808

Query: 721 SG-GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
           +G G++ ++   T+N  + + V D G G+    LE     F Q+ ++   + +GTGLGL 
Sbjct: 809 AGQGRVRLTLAATANG-IRVEVADNGPGLPANALEAVFDKFHQVGDTLTNKPKGTGLGLA 867

Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +++ +V+   G+ ++ S   +G       P
Sbjct: 868 ISRTIVEHLGGRIWVDSIEGQGATFTFDLP 897


>gi|116251644|ref|YP_767482.1| nitrogen fixation two component sensor/regulator fusion
           transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115256292|emb|CAK07373.1| putative nitrogen fixation two component sensor/regulator fusion
           transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 639

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 86/529 (16%), Positives = 181/529 (34%), Gaps = 49/529 (9%)

Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
             A  +   +      D   +    +  G +         L  + + + +          
Sbjct: 3   EHATSETDLDRIVRMFDGANLIVHGFD-GVIQRWTSGCEQLYGWSASEAVGNVVHDLLDT 61

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
             P   +    +                     +      LA+           P+ +  
Sbjct: 62  QFPAGVEELRTEVRDKGFWTGQVGH--------RRKDGVRLAIVTRWTVLELGDPDTL-I 112

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490
                +    +    ++      L SIL    D + +I+ +G I S + A  KLFGY  +
Sbjct: 113 IQSNNDVTLMQQVGDELRERQAHLQSILATVPDAMIVIDDKGCIASFSTAAEKLFGYSAD 172

Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL--EKITLGSTKEEKLLSLRIIIKK- 547
           + + +  ++ +        + YL   +    R+ +   ++ +G  K      + + + + 
Sbjct: 173 EAIGQNVSMLMPSPDREAHDGYLDSYIRTGRRRIIGYGRVVVGLRKHGTTFPMELSVGEA 232

Query: 548 -LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
                  ++  + D++   + + +L  ++K+              ++H+    L  IIG 
Sbjct: 233 VAGGKRTFTGFVRDLTSRHRIEAELRQSQKM-----EAVGQLTGGLAHDFNNLLAVIIGN 287

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
            E+++ +    L  P  +        + +    + + LL   + ++    L    + +  
Sbjct: 288 LEMLEAR----LAEPGQLSLLREAQSAADDGARLTSQLLAFGRRQA----LAPTVLDVGA 339

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726
            + E   LVQ       + +RT         +AD   ++   LN+  NA    P+GG++ 
Sbjct: 340 LLGEFSDLVQ-RTLGDSVELRTIIPGRRLSAMADKAQLQSALLNLSINARDAMPAGGRLT 398

Query: 727 IST--------------THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           I                       V++ V DTG GMT+  +E+A +PF     +      
Sbjct: 399 IEISGVEIDADYVGMYPAIRPGRYVLISVTDTGTGMTSEVMERAFEPFFTTKPTGS---- 454

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD---TSHPHD 818
           GTGLGL +       + G   ++S P +GT + +  P  D    SHP +
Sbjct: 455 GTGLGLSMVYGFAKQSAGHLQLYSEPGEGTTVRLFLPRADGGRDSHPDE 503



 Score = 55.4 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 36/252 (14%), Positives = 60/252 (23%), Gaps = 15/252 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-----IGDLLKRQNTW 143
           ID  G +   S    K  G  A + IG  +  +      + ++      I    +R   +
Sbjct: 150 IDDKGCIASFSTAAEKLFGYSADEAIGQNVSMLMPSPDREAHDGYLDSYIRTGRRRIIGY 209

Query: 144 YGKTTLWPIEGTNLYVPIDLA-ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
                     GT    P++L+    +    R F+GF     V      +   A  ++  K
Sbjct: 210 GRVVVGLRKHGTTF--PMELSVGEAVAGGKRTFTGF-----VRDLTSRHRIEAELRQSQK 262

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
             +                  I            +    SL        D        LL
Sbjct: 263 MEAVGQLTGGLAHDFNNLLAVIIGNLEMLEARLAEPGQLSLLREAQSAADDGARLTSQLL 322

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE--N 320
                            L          TL ++ +        R          +    N
Sbjct: 323 AFGRRQALAPTVLDVGALLGEFSDLVQRTLGDSVELRTIIPGRRLSAMADKAQLQSALLN 382

Query: 321 LTPETVDKCPIP 332
           L+    D  P  
Sbjct: 383 LSINARDAMPAG 394



 Score = 37.7 bits (86), Expect = 8.6,   Method: Composition-based stats.
 Identities = 39/384 (10%), Positives = 98/384 (25%), Gaps = 29/384 (7%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151
            G ++  +    +  G  A + +G  + D+ D         +   ++ +  W G+     
Sbjct: 29  DGVIQRWTSGCEQLYGWSASEAVGNVVHDLLDTQFPAGVEELRTEVRDKGFWTGQVGHRR 88

Query: 152 IEGTNLYVPIDLAALPIYSRN-------REFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            +G  L +      L +   +        + +  +  G     R                
Sbjct: 89  KDGVRLAIVTRWTVLELGDPDTLIIQSNNDVTLMQQVG--DELRERQAHLQSILATVPDA 146

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
             + + K   +S       +F   +     +  + +    +  AH           + T 
Sbjct: 147 MIVIDDKGCIASFSTAAEKLFGYSADEAIGQNVSMLMPSPDREAHDGY----LDSYIRTG 202

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP- 323
               +        +  +  T        +  +     +       +     +     +  
Sbjct: 203 RRRIIGYGRVVVGLRKHGTTFPMELSVGEAVAGGKRTFTGFVRDLTSRHRIEAELRQSQK 262

Query: 324 -ETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDD-IEIAGGLSTLLDAPKLSDNNAI 381
            E V +              + N   +++   + ++  +   G LS L +A   +D+ A 
Sbjct: 263 MEAVGQLTGGLAHD------FNNLLAVIIGNLEMLEARLAEPGQLSLLREAQSAADDGAR 316

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRE-NSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
               L    R    A   L       E + L    +      +      +     +    
Sbjct: 317 LTSQLLAFGRRQALAPTVLDVGALLGEFSDLVQRTLGDSVELRTIIPGRRLSAMADKAQL 376

Query: 441 RINKRKMEIEVMQLCSILEATSDG 464
           +     + I         +A   G
Sbjct: 377 QSALLNLSINAR------DAMPAG 394


>gi|154248554|ref|YP_001419512.1| multi-sensor hybrid histidine kinase [Xanthobacter autotrophicus
           Py2]
 gi|154162639|gb|ABS69855.1| multi-sensor hybrid histidine kinase [Xanthobacter autotrophicus
           Py2]
          Length = 857

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 104/620 (16%), Positives = 199/620 (32%), Gaps = 57/620 (9%)

Query: 226 SQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE---QEDFHTINLNQ 282
              +PP   R   ++           + +            ++ P     E       + 
Sbjct: 124 GVDAPPVPERFLARIPGSQPMVGELLNAVAAATMATSAVAFATGPGGRRLEVSVHPLGSP 183

Query: 283 YTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE-----TVDKCPIPFFVYS 337
                     ++    +    +     S +A       + P        ++ P      S
Sbjct: 184 RRVLWTLRMAEDMQDMAAAPAAAVAPASGAADVPHTPEVVPGADLVSVWERAPAGLLHLS 243

Query: 338 HGNLFYANPSFLLLTKYKSVD------DIEIAGGLSTL--LDAPKLSDNNAIKPVMLYRS 389
            G +   N +   +  Y   D      D+        L  L+        A   V L R 
Sbjct: 244 GGRVLAPNLTLCRMLGYALADWGPDGRDVREVVAPDDLGGLEQVLAVGAEAALKVALTRK 303

Query: 390 DRTCIAASARLHTIQW--NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
           D T   A  RL   Q   +   + A+            E + ++       D        
Sbjct: 304 DGTHFPAILRLAPTQPPADGMVAAAVPLDALVDLLPAREGVARSVAAQAPADGAPATSAP 363

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
                            +A+++  G I + N A ++LFG    D   +P          +
Sbjct: 364 AASSDLF---FLNAPLALALVDPAGRIRAANAAFARLFG---RDAAGRP---LAALLADA 414

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQE 567
                L                  +    +   L             +L   D SE KQ 
Sbjct: 415 AGAEGLLAGAVHAGEPPAPCEVTLAGPAGRSARLYAAALGPDGGGDIALCAIDTSEQKQL 474

Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
           + + + ++K+              V+H+    LTAI+G+ +++  +      +P + +  
Sbjct: 475 EAQFAESQKL-----QAVGHLAGGVAHDFNNILTAILGYCDLLLVKH--RQSDPSFPDIM 527

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
             I ++ N    +V  LL  S+    +  L  + + L + +S+A +L++     +RI + 
Sbjct: 528 Q-IKQNANRAAGLVGQLLAFSR----RQTLLPQVIELTDVISDAAALLRRLI-GERITLE 581

Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST-------------THTSN 734
              A ++  +  D    +Q+ +N++ NA    P GG + + T                  
Sbjct: 582 VQHARDLWPVKVDKNQFEQVIINLVVNARDAMPDGGTLTVRTANVPAAASTAYGQRLPEG 641

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
           + V++ V DTG G+    + K  +PF     S +  G+GTGLGL     +V+   G    
Sbjct: 642 DYVLVEVADTGTGIPPEVMGKIFEPFF----STKEVGKGTGLGLSTVYGIVEQTGGTILA 697

Query: 795 FSTPAKGTLIEIIFPLYDTS 814
            ST  +GT   +  P +  +
Sbjct: 698 ESTLGEGTTFRVFLPRHTGA 717



 Score = 43.5 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 43/397 (10%), Positives = 93/397 (23%), Gaps = 50/397 (12%)

Query: 93  GYLKEISEELPKTIGNYAFKM--IGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150
           G +   +  L + +G         G  + +V     +     +  +L        K  L 
Sbjct: 245 GRVLAPNLTLCRMLGYALADWGPDGRDVREVVAPDDL---GGLEQVLAVGAEAALKVALT 301

Query: 151 PIEGTNLYVPIDL------------AALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
             +GT+    + L            AA+P+ +         G       +   D      
Sbjct: 302 RKDGTHFPAILRLAPTQPPADGMVAAAVPLDALVDLLPAREGVARSVAAQAPADGAPATS 361

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
                            ++      I +  +    L  ++                +   
Sbjct: 362 APAASSDLFFLNAPLALALVDPAGRIRAANAAFARLFGRDAAGRPLAALLADAAGAEGLL 421

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
              + + E   P +                          +   +       L A F E 
Sbjct: 422 AGAVHAGEPPAPCEVTLAGPAGRSARLYAAALGPDGGGDIALCAIDTSEQKQLEAQFAES 481

Query: 319 ENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
           + L  + V                  N     +  Y  +           LL   + SD 
Sbjct: 482 QKL--QAVGHLAGGVAHD-------FNNILTAILGYCDL-----------LLVKHRQSDP 521

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
           +    + +        AA      + ++R  +L    I           + +  I     
Sbjct: 522 SFPDIMQI--KQNANRAAGLVGQLLAFSRRQTLLPQVIELTDVISDAAALLRRLIGERIT 579

Query: 439 DTRINKRKM---EIEVMQLCSIL--------EATSDG 464
               + R +   +++  Q   ++        +A  DG
Sbjct: 580 LEVQHARDLWPVKVDKNQFEQVIINLVVNARDAMPDG 616


>gi|300087390|ref|YP_003757912.1| integral membrane sensor signal transduction histidine kinase
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527123|gb|ADJ25591.1| integral membrane sensor signal transduction histidine kinase
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 479

 Score =  277 bits (708), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 68/247 (27%), Positives = 115/247 (46%), Gaps = 8/247 (3%)

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           +     +      EK    +   LA V+HE+RTPLT I G  + + +   G L       
Sbjct: 232 RLAESFNVMASALEKSEQSRKRLLADVAHELRTPLTVINGTVDAMMD---GVLPTDEQQ- 287

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
               I     L+  ++ DL D+S  E+G++ L    + L + V   +   +L A  + I 
Sbjct: 288 -LGTIKEESLLLTRLIADLRDLSLAEAGQLKLDKSVIDLGDLVCRKLEQFRLLAETRNIR 346

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST---THTSNEEVILRVR 742
           +       +P +  D   ++Q+  N+LSNA+  TP+GG++ +     +   +  V + V 
Sbjct: 347 LECHNPGGLPSVNGDWVRLEQVLANLLSNALRHTPAGGEVSVRLTEASLDGSPAVAVAVS 406

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG GMT  +L+     F ++ +S+     G GLGL + K MV A+ G+  + S P +GT
Sbjct: 407 DTGEGMTPEDLKHIFDRFYRVEDSRSRDEGGAGLGLAIVKQMVTAHSGRVSVESAPGRGT 466

Query: 803 LIEIIFP 809
              +  P
Sbjct: 467 TFTVTLP 473


>gi|260221812|emb|CBA30748.1| hypothetical protein Csp_C25110 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 486

 Score =  277 bits (708), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 76/249 (30%), Positives = 130/249 (52%), Gaps = 9/249 (3%)

Query: 563 EWKQEKN--KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           E +  +   +L  A   AE  +  KS FLA +SHEIRTP+   +G +E++K+       N
Sbjct: 87  EQRVSERTAELQAALVQAESANVAKSRFLAMMSHEIRTPMNGALGLTELLKSTPL----N 142

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
                Y + I  +GN +L ++ND+LD SKIE+ +M L   P +  + V + ++L +  A 
Sbjct: 143 NEQAGYVDNILMAGNALLSLINDILDFSKIEAHQMELERIPFNPRQVVQDTLALFRTQAQ 202

Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
            K +++     +++P     D   ++Q+ +N++ NA+ FT  G ++ I+   T    +  
Sbjct: 203 AKGLVLHLDMDDHVPDHATGDPNRLRQVWMNLVGNALKFTSEG-EVRIALLCTPEG-LRC 260

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V+DTG+GM+   + +  +PF Q  +S   +  GTGLGL + KA++D       + STP 
Sbjct: 261 SVKDTGIGMSAEVMSQLFEPFKQGDSSISRKFGGTGLGLVICKALIDQMGADLQVQSTPG 320

Query: 800 KGTLIEIIF 808
            GT      
Sbjct: 321 VGTEFSFTL 329


>gi|315125227|ref|YP_004067230.1| hypothetical protein PSM_A0119 [Pseudoalteromonas sp. SM9913]
 gi|315013740|gb|ADT67078.1| conserved hypothetical protein [Pseudoalteromonas sp. SM9913]
          Length = 940

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 68/248 (27%), Positives = 123/248 (49%), Gaps = 6/248 (2%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           + +Q   +L    +   + +  KS FLA +SHEIRTPLTAI+  ++ + + ++      +
Sbjct: 456 QVEQRTKELQSVAQELREANEVKSQFLANISHEIRTPLTAILAQTDDLISGQYKA---EQ 512

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             +    I R    +  ++ND+LD+SKIE+ ++ L+     +   +++  ++       K
Sbjct: 513 LQDELRVIQRQSEHLRSLINDVLDLSKIEANRLELNISCFDMVRLINDVHAMFSPQTKAK 572

Query: 683 RILIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
            + +       +      DL  VKQI +N+ +NAI FT  G  + I+ + T    ++  +
Sbjct: 573 GLSLILESQLGDTYFTRLDLTRVKQILINLCANAIKFTHKG-HVTIAVSKTDQG-LLFCI 630

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
           +DTG+GM++ +L+   + F Q  NS   R  GTGLGL L++ +     G   + S   KG
Sbjct: 631 QDTGIGMSSSQLKLIFECFSQADNSISRRFGGTGLGLSLSQQLAAMMGGYISVQSEFKKG 690

Query: 802 TLIEIIFP 809
           +      P
Sbjct: 691 SEFSFYLP 698


>gi|16127332|ref|NP_421896.1| sensor histidine kinase/response regulator [Caulobacter crescentus
           CB15]
 gi|13424758|gb|AAK25064.1| sensor histidine kinase/response regulator [Caulobacter crescentus
           CB15]
          Length = 560

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 74/228 (32%), Positives = 124/228 (54%), Gaps = 6/228 (2%)

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
           S  KS FLA +SHE+RTP+  ++G +  ++  +     + +  EY   I++SG+ ++ I+
Sbjct: 183 SRAKSAFLAMMSHELRTPMNGVLGLAHALRGTKL----DAQQSEYLEMIEQSGHGLMTIL 238

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN-IPRILAD 700
           ND+LD+SKIE+GK+NL   P  L +   +  ++    A  K + +    + +  P +  D
Sbjct: 239 NDILDLSKIEAGKLNLEVAPFDLRKLALQTRAVWSESARLKGLDLILEVSPSAPPWVSGD 298

Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760
              V+QI +N++SNA+ FT SG +++I     +   V L V DTGVGMT  ++ +   PF
Sbjct: 299 ATRVRQILMNLVSNALKFTESG-RVVIRLGGEAGGVVTLSVTDTGVGMTAEQIGRLFTPF 357

Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            Q   S   R  GTGLGL + + + +   G+  + S P  G+   +  
Sbjct: 358 AQGDASIARRFGGTGLGLSICRQLAELMAGEIIVSSEPGVGSTFTVRL 405


>gi|304409489|ref|ZP_07391109.1| PAS/PAC sensor signal transduction histidine kinase [Shewanella
           baltica OS183]
 gi|307303847|ref|ZP_07583600.1| PAS/PAC sensor signal transduction histidine kinase [Shewanella
           baltica BA175]
 gi|304352007|gb|EFM16405.1| PAS/PAC sensor signal transduction histidine kinase [Shewanella
           baltica OS183]
 gi|306912745|gb|EFN43168.1| PAS/PAC sensor signal transduction histidine kinase [Shewanella
           baltica BA175]
          Length = 358

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 70/372 (18%), Positives = 150/372 (40%), Gaps = 33/372 (8%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           R    ++   + +     EA  D   +++ E  IL  N+    + G+       +     
Sbjct: 13  RRRVGQLAALLARFRQGAEALPDAAVVLDSEHNILWCNKLAQLILGFVWPQDNGQRIDNL 72

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
           +     S           L+L   +         + +LL +RI+           L   D
Sbjct: 73  IRHPDFSAYIKSAQYKEPLELPSPV--------SDRRLLEIRIMAY---GDRQLLLIARD 121

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I+  +Q +                + +F+A VSHE++TPLT + G+ E++++       +
Sbjct: 122 ITRIRQLEG--------------MRKEFVANVSHELKTPLTVLQGYLEMMQSM---AEPD 164

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIE-SGKMNLHFEPVSLDEAVSEAISLVQLYA 679
              ++    + +    +  +V  LL +S+IE +  +NL    V++ + +       +  A
Sbjct: 165 SMNVKPLALMQQQTRRMQSMVEQLLMLSRIEDAADINLEHT-VNMTQLMEVLKEEAKALA 223

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
            + R  +       +     +   ++    N++SNAI +T  GG+I +     +   +  
Sbjct: 224 QD-RYELSFYCEPGLDS-HGNELQLRSACSNLISNAIRYTEPGGKITVQWRSMATGAI-F 280

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V DTG G+    + +  + F ++ +++  +  G+GLGL + K  ++ +  +  I S   
Sbjct: 281 SVTDTGEGIAPQHIGRLTERFYRVDSARSRQTGGSGLGLAIVKHALNHHHSELKISSEVG 340

Query: 800 KGTLIEIIFPLY 811
           KG+    + PL+
Sbjct: 341 KGSTFSFVIPLH 352


>gi|37930220|gb|AAP76280.1| GacS [Pseudomonas sp. PCL1171]
          Length = 917

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 79/243 (32%), Positives = 142/243 (58%), Gaps = 8/243 (3%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  A+K A + S  KS+FLA +SHEIRTPL  I+GF+ +++     P    R ++Y   
Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSEMSP----RQLDYLGT 325

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I++S + +L I+N++LD SKIE+GK+ L   P +L + + + ++++   A+ K++ + + 
Sbjct: 326 IEKSADNLLGIINEILDFSKIEAGKLVLDSVPFNLRDLLQDTLTILAPAAHAKQLELVSL 385

Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQI---IISTTHTSNEEVILRVRDTG 745
              + P  ++ D   +KQI  N++SNAI FT  G  +   +I      + ++ + V+DTG
Sbjct: 386 VYRDTPLALVGDPLRLKQILTNLVSNAIKFTREGTIVARAMIEDEQEDSVQLRISVQDTG 445

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G++N ++    + F Q  NS   +  GTGLGL ++K +++   G+  + STP +G+   
Sbjct: 446 IGLSNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFW 505

Query: 806 IIF 808
           I  
Sbjct: 506 ISL 508


>gi|269967809|ref|ZP_06181855.1| sensor protein TorS [Vibrio alginolyticus 40B]
 gi|269827585|gb|EEZ81873.1| sensor protein TorS [Vibrio alginolyticus 40B]
          Length = 895

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 78/255 (30%), Positives = 127/255 (49%), Gaps = 9/255 (3%)

Query: 564 WKQEKNKLSHA--KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
            +  +  L+HA  +K AE+ S  KS FLA +SHEIRTP+  ++G + ++ +    P+   
Sbjct: 447 RRLNEEVLNHAKARKQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLIDSGLNPI--- 503

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
               YA  I+RSG  +L I+ND+LD SKIE+G + +      L + V +   L+   A E
Sbjct: 504 -QKRYAEIINRSGKTLLAILNDVLDYSKIEAGHLEIRHMGFDLHQMVEDTFQLMNSRAQE 562

Query: 682 KRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVIL 739
           K++L      +++ R    D+  + Q+  N++ NAI FT  G   I +S       +V+ 
Sbjct: 563 KKLLFSYHIESDVSRYWKGDVTRISQVLNNLVGNAIKFTDEGEIDIYVSLNPEDESQVLF 622

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V DTG+G+           F Q       +  GTGLGL ++K +++A  G   + S   
Sbjct: 623 EVSDTGIGIAKKYQRTLFDAFTQAEGGMS-QTGGTGLGLAISKRIIEAMGGVLEVDSEEG 681

Query: 800 KGTLIEIIFPLYDTS 814
            G+      PL ++ 
Sbjct: 682 NGSRFWFSIPLEESE 696


>gi|320354600|ref|YP_004195939.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
           2032]
 gi|320123102|gb|ADW18648.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
           2032]
          Length = 984

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 91/663 (13%), Positives = 202/663 (30%), Gaps = 69/663 (10%)

Query: 182 GIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS 241
             V         +   +  D    + + +    +      ++I  ++          +  
Sbjct: 224 AAVRPPHAPLSRQFAVRVADGGTVNGYALINDLADRPGLVFEIAQERKLFRQGVTMWRQH 283

Query: 242 SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301
           +L         +L                   +   I ++     +   + Q+   E   
Sbjct: 284 ALFSLLLGLVFILVLVVLLNRGILRHLTRLTSEVGAIAVSGRHDGRVTVSSQDEIGELAI 343

Query: 302 YLSHRNHPSLSAYFDEG--ENLTPETVDKCPIPFFVYSHG--NLFYANPSFLLLTKYKSV 357
            ++                E      +D       +      ++   N +   +      
Sbjct: 344 QINTMLESLHWLQRQREDNERHLQTIIDSIHCGIMIVDAENRHILSINRTGAAMLNRSPE 403

Query: 358 DDIEIA------GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411
             I                      +   +    L R+D + +     +  I+      L
Sbjct: 404 AVIGQVCHQFACPQQQHDCPVLDRGEQVDLSERSLLRADNSLLPVLKSVAVIEKEGRQLL 463

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471
             +FI                   +    +  + K+ I  ++     E    G  + + +
Sbjct: 464 IESFI-------------------DISGLKQVQEKLRINELKYRQFFEDDLTGKFLGDID 504

Query: 472 GIILSTNRAVSKLFGYPV-EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530
           G IL  NRA +++ GY    ++    F               L  +        +    +
Sbjct: 505 GQILDCNRAFAEMLGYQEVNEVKGVSFRQHYFIAGNRA--DKLQRLTKSGK--LIRDEEI 560

Query: 531 GSTKEEKLLSLRIIIKKLPFSSCYSLTMH----DISEWKQEKNKLSHAKKIAEKESSHKS 586
              ++   +     I          + +     D ++    + ++  A+K+         
Sbjct: 561 LRHRDGSPIYCIGNIVGEFDEQGQLIHIRGYVMDDTKRVLLEQEVRQAQKL-----EAIG 615

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
                ++H+    L  I+G++E+I           R+ +    I  +G     +++ +L 
Sbjct: 616 TMAGGIAHDFNNILAGIMGYAELILRD-LEQQPQARHQQLLRNILSAGERARALIHKILT 674

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706
            S+    +     +P+ L + + +A+ L++       I I    +++   +LAD   + Q
Sbjct: 675 FSR----QAESEPQPIRLQQTIDDAVDLIRASLPS-TIAIE-HRSDSRATVLADPIQIHQ 728

Query: 707 IALNILSNAIHFTPS-GGQIIISTT--------------HTSNEEVILRVRDTGVGMTNY 751
           + +N+ +NA H     GG + IS                    E V + V D+G G+  +
Sbjct: 729 VFMNLCTNAGHAMKESGGTLTISLEDVTLDSQFTSDHPELRPGEYVRVEVSDSGEGIPEH 788

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
            L +   PF         +GEGTGLGL +   +V +  G   + S P +GT   I  P+ 
Sbjct: 789 LLGRIFDPFFTTKK----KGEGTGLGLAMVHGIVSSMHGLIQVASQPGQGTRFTIHLPIV 844

Query: 812 DTS 814
             +
Sbjct: 845 QET 847



 Score = 46.6 bits (109), Expect = 0.019,   Method: Composition-based stats.
 Identities = 25/310 (8%), Positives = 74/310 (23%), Gaps = 25/310 (8%)

Query: 90  DAHGYLKEISEELPKTIGN-YAFKMIGMRLCDVSDILHI-DPNNHIGDLLKRQNTWYGKT 147
           D  G + + +    + +G     ++ G+            +  + +  L K       + 
Sbjct: 502 DIDGQILDCNRAFAEMLGYQEVNEVKGVSFRQ--HYFIAGNRADKLQRLTKSGKLIRDEE 559

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
            L   +G+ +Y   ++     +    +    RG+       V +D + +    + + +  
Sbjct: 560 ILRHRDGSPIYCIGNIVGE--FDEQGQLIHIRGY-------VMDDTKRVLLEQEVRQAQK 610

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
            E     +      ++            M      L +         +     +L++ E 
Sbjct: 611 LEAIGTMAGGIAHDFNNI------LAGIMGYAELILRDLEQQPQARHQQLLRNILSAGER 664

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
           +       H I       +     ++            R     +   +   +       
Sbjct: 665 ARAL---IHKILTFSRQAESEPQPIRLQQTIDDAVDLIRASLPSTIAIEHRSDSRATV-- 719

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
               P  ++        N    +     ++        L +   +            +  
Sbjct: 720 -LADPIQIHQVFMNLCTNAGHAMKESGGTLTISLEDVTLDSQFTSDHPELRPGEYVRVEV 778

Query: 388 RSDRTCIAAS 397
                 I   
Sbjct: 779 SDSGEGIPEH 788


>gi|254719113|ref|ZP_05180924.1| PAS domain-containing protein [Brucella sp. 83/13]
          Length = 898

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 98/622 (15%), Positives = 201/622 (32%), Gaps = 43/622 (6%)

Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271
           +G      + Y   +  +    +R  ++V +     +     L       L+++E     
Sbjct: 145 RGQIVYANQAYARMTGATDADGIRPLDQVLASEPAASDAIYRLTNAVRDGLSAQEEVRIS 204

Query: 272 QEDFHTINLNQY--TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE-----NLTPE 324
                  N +      +     L+  ++     ++ +         ++            
Sbjct: 205 GGLSRGANGSLAPVWYRIKARALEGGAEFKGPLVAWQVADISEERAEQERFFQELQEAIN 264

Query: 325 TVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
            +D  P  FF     G + Y N +               +  L+ ++    ++       
Sbjct: 265 HLDHAPAGFFSANPAGRIIYLNATLAEWLGVDLTQFTPGSLTLNDIVAGSGMA------L 318

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
           +   +++      +     +      SLA+ F    +  +         I  +  +   +
Sbjct: 319 IKAVKAEPGTSRNTVIDLDLIKRNGQSLAVRFYHRVQTARDGMPGTTRTIVLDRAEGDDS 378

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG--YPVEDILRKPFTVFL 501
                   ++      +    IA ++ EG  L TN     +F      + I R+     +
Sbjct: 379 SVAQRSAEVRFTRFFNSAPMAIAAVDAEGHTLRTNARFLDIFSGVVDRDAIDRRVKLENV 438

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDI 561
                    +                 T+    EE+ +   +                 I
Sbjct: 439 VHERDRETFNKALAAAFAGQASISPVDTVLPGNEERHIRFYMSPVTDLGGEAAEEAAI-I 497

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           S  +  + K    +    ++          ++H+    LTAII  S+++         +P
Sbjct: 498 SAVETTEQKALENQMAQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNH--RASDP 555

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
            + +  N I ++ N    +V  LL  S+    +  L  E + L + +++ + ++      
Sbjct: 556 SFPDIMN-IKQNANRAASLVRQLLAFSR----RQTLRPEVLDLTDVLAD-LRMLLARLVG 609

Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT----------- 730
           K I ++     ++  + ADL   +Q+A+N+  NA    P GGQI + T            
Sbjct: 610 KDIELKIDHGRDLWPVKADLGQFEQVAVNLAVNARDAMPEGGQITLRTRNIPAADAAKLH 669

Query: 731 ---HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
                  + V+  V DTG G+    LEK  +PF          G+GTGLGL +   ++  
Sbjct: 670 YRDLPEADYVVFEVEDTGTGIPADVLEKIFEPFFTTK----EVGKGTGLGLSMVYGIIKQ 725

Query: 788 NMGKFYIFSTPAKGTLIEIIFP 809
             G  Y  S   KGT  +I  P
Sbjct: 726 TGGFIYCDSEVGKGTTFKIFLP 747



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/238 (11%), Positives = 66/238 (27%), Gaps = 7/238 (2%)

Query: 319 ENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
           ++L    +D  P    +    G + YAN ++  +T     D I     +  L   P  SD
Sbjct: 125 QDLAHSFMDTQPEGTVISDPRGQIVYANQAYARMTGATDADGIRPLDQV--LASEPAASD 182

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
                   +                 +    +   + +    +A +         +  + 
Sbjct: 183 AIYRLTNAVRDGLSAQEEVRISGGLSRGANGSLAPVWYRIKARALEGGAEFKGPLVAWQV 242

Query: 438 VDTRINKRKMEIEVMQLC-SI--LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
            D    + + E    +L  +I  L+    G    N  G I+  N  +++  G  +     
Sbjct: 243 ADISEERAEQERFFQELQEAINHLDHAPAGFFSANPAGRIIYLNATLAEWLGVDLTQFTP 302

Query: 495 KPFT-VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
              T   +   +   +   +           ++   +    +   +     ++     
Sbjct: 303 GSLTLNDIVAGSGMALIKAVKAEPGTSRNTVIDLDLIKRNGQSLAVRFYHRVQTARDG 360



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 47/420 (11%), Positives = 103/420 (24%), Gaps = 38/420 (9%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD--ILHIDPNNHIGDLLKRQNTWYGKT 147
           D  G +   ++   +  G      I   L  V        D    + + ++   +   + 
Sbjct: 143 DPRGQIVYANQAYARMTGATDADGI-RPLDQVLASEPAASDAIYRLTNAVRDGLSAQEEV 201

Query: 148 TL-----WPIEGTNLYVPIDLAALPIYSRNREFSG-FRGFGIVHVNRVDNDPRALGKRLD 201
            +         G+   V   + A  +     EF G    + +  ++    +     + L 
Sbjct: 202 RISGGLSRGANGSLAPVWYRIKARALEGGA-EFKGPLVAWQVADISEERAEQERFFQELQ 260

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR------MKNKVSSLTEYYAHKDDVLK 255
           +  +HL     G  S       I+   +    L           ++           ++K
Sbjct: 261 EAINHLDHAPAGFFSANPAGRIIYLNATLAEWLGVDLTQFTPGSLTLNDIVAGSGMALIK 320

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN--NSKESFEYLSHRNHPSLSA 313
             K    TS  + +                     T ++          L        S 
Sbjct: 321 AVKAEPGTSRNTVIDLDLIKRNGQSLAVRFYHRVQTARDGMPGTTRTIVLDRAEGDDSSV 380

Query: 314 YFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLT-KYKSVDDIEIAGGLSTLLD 371
                E       +  P+    V + G+    N  FL +       D I+    L  +  
Sbjct: 381 AQRSAEVRFTRFFNSAPMAIAAVDAEGHTLRTNARFLDIFSGVVDRDAIDRRVKLENV-V 439

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
             +  +         +    +       L     N E  +     P              
Sbjct: 440 HERDRETFNKALAAAFAGQASISPVDTVL---PGNEERHIRFYMSPVTDLGGEAAEEAAI 496

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSI----------LEATSDGIAIINREGIILSTNRAV 481
               E  + +  + +M  +  ++ ++                 I + +    +L TN   
Sbjct: 497 ISAVETTEQKALENQM-AQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSD---LLLTNHRA 552



 Score = 48.9 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 45/134 (33%), Gaps = 12/134 (8%)

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY-LT 514
           S ++   +G  I +  G I+  N+A +++ G    D   +P    L     +    Y LT
Sbjct: 130 SFMDTQPEGTVISDPRGQIVYANQAYARMTGATDAD-GIRPLDQVLASEPAASDAIYRLT 188

Query: 515 EILSLDLRQTLEKITLG---STKEEKLLSLRIIIKKLPFSSC-------YSLTMHDISEW 564
             +   L    E    G         L  +   IK               +  + DISE 
Sbjct: 189 NAVRDGLSAQEEVRISGGLSRGANGSLAPVWYRIKARALEGGAEFKGPLVAWQVADISEE 248

Query: 565 KQEKNKLSHAKKIA 578
           + E+ +     + A
Sbjct: 249 RAEQERFFQELQEA 262


>gi|329911607|ref|ZP_08275576.1| two-component hybrid sensor and regulator [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327545833|gb|EGF30951.1| two-component hybrid sensor and regulator [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 654

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 104/508 (20%), Positives = 185/508 (36%), Gaps = 29/508 (5%)

Query: 318 GENLTPETVDKCPIPFFVYSHGN---LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
                   +   P    V        +  A+  FL  +     + I  A       D   
Sbjct: 3   ARFDFSHVMQALPGRVLVLLPDRHYTIVAASDRFLEASDRAREEVIGHAY-FDAFPDTTD 61

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
                  + +      R      A    +             P   AN   E +     +
Sbjct: 62  ADAGELRRSLDALCESRIAAPLPASPRQLT--AGRQWHPALHPVLNANSELEAIILQLQD 119

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS-KLFGYPVEDIL 493
              +           +  +L    +A   G      +G ++  N      LF  P   + 
Sbjct: 120 IAVLHACTG-----SDGSRLARCADAAELGTFEYQLDGDLVIGNPTFLSHLFLAPDTALT 174

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR----IIIKKLP 549
            + F + L           +   +       L+        + ++  LR    +      
Sbjct: 175 LEQFLLTLHPEDSPRSRAAIATTIRDGTPYDLQYRV--RAADGRVRWLRAKGCVTGNATL 232

Query: 550 FSSCYSLTMHDISEWKQEKNKL-------SHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
            +  ++    DI+  KQ +            A+  AE  S  K +FL+ +SHE+RTPL +
Sbjct: 233 GTRSFNGITLDITASKQIEEAHNDSAEASHMARAAAEHASLIKDEFLSTLSHELRTPLNS 292

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           I+G+++V++  R     + + I     I+RS      +++DLLD S I +GK++L+ +PV
Sbjct: 293 ILGWTQVLQ--RGSTNMSDKAITALGTIERSARQQARLIDDLLDASAIMAGKIHLNLQPV 350

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
             ++ +S +++L    A  + I +          I AD   ++QI   +LSNAI F+P+ 
Sbjct: 351 RCNDVISASVALSAPLAASRNIQLDVRIDEPGMAIEADQSRLQQILCRLLSNAIKFSPND 410

Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
             + I    +SN  VI+ + D+G G+    L      F Q   S      G GLGL + K
Sbjct: 411 STVTIR-QMSSNHRVIITITDSGQGIAPAFLPSLFARFSQADGSITRSHMGLGLGLSIVK 469

Query: 783 AMVDANMGKFYIFST-PAKGTLIEIIFP 809
           ++++ + G     S   A+G    I  P
Sbjct: 470 SLIELHGGIVSATSRGLARGATFTIELP 497


>gi|197124634|ref|YP_002136585.1| GAF sensor hybrid histidine kinase [Anaeromyxobacter sp. K]
 gi|196174483|gb|ACG75456.1| GAF sensor hybrid histidine kinase [Anaeromyxobacter sp. K]
          Length = 1843

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 69/249 (27%), Positives = 129/249 (51%), Gaps = 3/249 (1%)

Query: 562  SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
            SE +     L    +  +  S +KS+FLA +SHE+RTPL +++  S+++   R G L  P
Sbjct: 1427 SEVELASRSLEEKAEQLQLISRYKSEFLANMSHELRTPLNSLLILSKMLAENRDGNLT-P 1485

Query: 622  RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
              +++A+ +  SG+ +L ++N++LD+SKIE+GKM +      L+    +     +  A  
Sbjct: 1486 EQVKFASTVYTSGHELLGLINEILDLSKIEAGKMPIEPRDTRLESVRDDLEQTFRHVAEH 1545

Query: 682  KRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
            K +  +     ++P  I  D   + QI  N++SNA  FT  G ++++     +   +   
Sbjct: 1546 KGLGFQVRMGPDLPERIHTDPTRLLQILKNLISNAFKFTERG-EVVLDVGPAAGGALAFA 1604

Query: 741  VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
            VRDTG+G+   + +   + F Q   +   +  GTGLGL +++ +     G   + S P +
Sbjct: 1605 VRDTGIGIPADKQKLIFEAFQQADGTTSRKYGGTGLGLTISREIARLLGGSIEVKSAPGR 1664

Query: 801  GTLIEIIFP 809
            G++  ++ P
Sbjct: 1665 GSVFTLVLP 1673


>gi|188580116|ref|YP_001923561.1| integral membrane sensor signal transduction histidine kinase
           [Methylobacterium populi BJ001]
 gi|179343614|gb|ACB79026.1| integral membrane sensor signal transduction histidine kinase
           [Methylobacterium populi BJ001]
          Length = 513

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 101/247 (40%), Positives = 153/247 (61%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E +Q K     A++ AE+ +  KS FLA +SHE+RTPL AI+GFSEV+KN+ FG    P 
Sbjct: 236 ELEQAKANSDEARRRAEEANLAKSRFLATMSHELRTPLNAILGFSEVMKNEVFGAHAAPA 295

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
           Y EYA  I  SG  +L+++N++LD+S+IE+G+ +L  E V L   V E   ++ L A  K
Sbjct: 296 YREYATDIHDSGMHLLNLINEILDLSRIEAGRYDLSEEAVQLAHTVEECRHMMTLRARSK 355

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
                +   +++PR+ AD R+++QI LN+LSNA+ FTP GG+I I    TS+    + V+
Sbjct: 356 GQTFASLIDDSLPRLWADERALRQIVLNLLSNAVKFTPPGGEITIKVGWTSSGGQYVSVK 415

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D+G G+   EL   M  FG+   + +   +G+GLGLP+ K ++D + G F + S P +GT
Sbjct: 416 DSGPGIPEDELGTVMSSFGRGSLAIKTAEQGSGLGLPIVKGLIDLHGGGFQLKSKPREGT 475

Query: 803 LIEIIFP 809
            + + FP
Sbjct: 476 EVIVTFP 482


>gi|148927243|ref|ZP_01810815.1| multi-sensor signal transduction histidine kinase [candidate
           division TM7 genomosp. GTL1]
 gi|147887349|gb|EDK72801.1| multi-sensor signal transduction histidine kinase [candidate
           division TM7 genomosp. GTL1]
          Length = 549

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 73/414 (17%), Positives = 148/414 (35%), Gaps = 33/414 (7%)

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC--SILEATSDGIA 466
            +L +  +           +   G           K +    + +    S++ +  D I 
Sbjct: 149 EALILNIVASGIVIFVGSIISWLGRVHAAEHFAFQKARASESLQRDRIISLVNSIGDAIL 208

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
             +  G+I + N A   LF    E +  K     L     +     L + ++      + 
Sbjct: 209 NTDAHGVIRTYNAASLDLFD-TNESLNGKKMDDLLVLYNENNEKISLFKEVAGAQTVIIR 267

Query: 527 KITLGSTKEEKLLSLRIIIKKL--------PFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578
           +       + + + L I    +             Y   + DI++ K  + +        
Sbjct: 268 EDLTYRFGDGERMRLSINCSPVLSSFGERRRAQDGYIFILRDITKAKSLEEE-------- 319

Query: 579 EKESSHKSDFLARVSHEIRTPLT---AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
                 + +F++ VSHE+RTP+T   A +  ++ + + +          E          
Sbjct: 320 ------RDEFISVVSHELRTPITIAEATVSNAQFLLDHK---TAKDAMDEALASAHEQIL 370

Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695
            +  +VNDL  +S+ E G  +   E V LDE +          A+ K++ +       + 
Sbjct: 371 YLAKMVNDLSTLSRAERGVAD-DAELVDLDELMHSLYHEYHPQASVKKLTLDLDINGKLG 429

Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755
            I+     +++I  N ++N++ +T  GG I I+   T        V DTG+G++  + + 
Sbjct: 430 TIMVSRLYLEEILQNFITNSLKYTREGG-ITITAKRTKEGGAYFAVADTGIGVSKSDQKH 488

Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             + F +  + +     GTGLGL + K +      +    S    G+      P
Sbjct: 489 IFQKFYRSEDYRTRETSGTGLGLYIVKKLAQKLGTEVEFTSRLNHGSTFFFTLP 542


>gi|251790685|ref|YP_003005406.1| phosphate regulon sensor protein [Dickeya zeae Ech1591]
 gi|247539306|gb|ACT07927.1| PAS/PAC sensor signal transduction histidine kinase [Dickeya zeae
           Ech1591]
          Length = 440

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 65/357 (18%), Positives = 133/357 (37%), Gaps = 33/357 (9%)

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
           +  S  E+  D + I   EG I+  NR    L  +   +   +     L     +     
Sbjct: 99  RFRSGAESLPDAVVITTEEGGIIWCNRLAQHLLSFRWPEDNGQNILNLLRYPEFTQYM-- 156

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572
                    +Q   +    + K    +  R++           +   D+++  Q +    
Sbjct: 157 --------QQQDFSRPLTLTLKNAHHVEFRVMPY---SEGQLLMVARDVTQMHQLEG--- 202

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
                       + +F A VSHE+RTPLT + G+ E++ ++    L      +  + +  
Sbjct: 203 -----------ARRNFFANVSHELRTPLTVLQGYLEMMSDE---SLDGALQSKALHTMQE 248

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
               +  +V  LL +S+IE+       E V +   +   +       ++ R  I      
Sbjct: 249 QTRRMDGLVRQLLTLSRIEAAAAIDLNEKVDI-PLMLRVLKREADTLSQGRHEIVFRVNE 307

Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752
            + ++  +   ++    N++ NA++ TPSG +I +    T       +V D G G+    
Sbjct: 308 QL-QVFGNEEQLRSAVSNLVYNAVNHTPSGTRIEVCWQQTPQG-AQFQVSDNGPGIAAEH 365

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           L +  + F ++  ++  +  G+GLGL + K  +  +  +  I S    G+      P
Sbjct: 366 LPRLTERFYRVDKARSRQTGGSGLGLAIVKHALSHHDSRLEILSEEGAGSRFMFTLP 422


>gi|219847438|ref|YP_002461871.1| histidine kinase [Chloroflexus aggregans DSM 9485]
 gi|219541697|gb|ACL23435.1| histidine kinase [Chloroflexus aggregans DSM 9485]
          Length = 554

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 76/229 (33%), Positives = 121/229 (52%), Gaps = 7/229 (3%)

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           FLA +SHE+RTPL AI+G+++++  Q+  P     +  Y   I  SG  +L +++++LD 
Sbjct: 311 FLATMSHELRTPLNAILGYAQLLHIQKVVP---DSHQPYLERILTSGRHLLSLISNVLDF 367

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707
           ++IE G ++L + PV +   V E +S+    A      I T     I  I  D R ++Q+
Sbjct: 368 ARIEQGALDLDYRPVEVAALVEEVVSMTLPLAQRHHNRIETDCPPEIGVIETDGRRLRQV 427

Query: 708 ALNILSNAIHFTPSGGQIIIST---THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764
            +N+LSNA  FT  G  I +      H   + +   V DTG+G+   +  K  +PF Q+ 
Sbjct: 428 LINLLSNAAKFTEDG-LIRLEVTAIQHNGRDGLRFAVHDTGIGIPPDKQHKLFQPFSQVD 486

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
           +S   R EGTGLGL L+K +V+A  G   + ST   G+   +  P+   
Sbjct: 487 DSVTRRYEGTGLGLALSKQIVEALGGTITVQSTVGVGSTFSVWIPVVPV 535


>gi|323169009|gb|EFZ54687.1| sensor evgS domain protein [Shigella sonnei 53G]
          Length = 790

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 88/419 (21%), Positives = 163/419 (38%), Gaps = 12/419 (2%)

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
            W+  +                  +    +       ++ +  +E ++    ++ ++  +
Sbjct: 121 TWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISFRKALSDSLPN 180

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--NTPSVMNHYLTEILSLDL 521
              ++N +G ++S N A    F          P         +  S  +    E      
Sbjct: 181 PTYVVNWQGNVISHNSAFEHYFTADYYKNAMLPLENSDSPFKDVFSNAHEVTAETKENRT 240

Query: 522 RQTLEKIT-LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
             T       G  K        +        + Y     DI+E +   + L   +  A  
Sbjct: 241 IYTQVFEIDNGIEKRCINHWHTLCNLPASDHAVYICGWQDITETRDLIHALEVERNKAIN 300

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            +  KS FLA +SHEIRTP+++I+GF E++       L   + +E  +    +G  +L +
Sbjct: 301 ATVAKSQFLATMSHEIRTPISSIMGFLELLS---GSGLSKEQRVEAISLAYSTGQSLLGL 357

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILA 699
           + ++LD+ KIESG   L  + V +   V          A  K I +  S    +   +  
Sbjct: 358 IGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALICSSTFPDHYLVKI 417

Query: 700 DLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMTNYELEKA 756
           D ++ KQ+  N+LSNA+ FT  G  +I  S  H  +   ++   + D+G G++  E ++ 
Sbjct: 418 DPQAFKQVLSNLLSNALKFTTEGAVKITTSLVHIDDNHAVIKMTIMDSGSGLSQEEQQQL 477

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            K + Q   S   +  G+GLGL + K ++    G   + S P  GT   I  P+  +  
Sbjct: 478 FKRYSQT--SAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVEISQQ 534


>gi|74312918|ref|YP_311337.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Shigella sonnei Ss046]
 gi|73856395|gb|AAZ89102.1| putative sensor for regulator EvgA [Shigella sonnei Ss046]
          Length = 1197

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 88/419 (21%), Positives = 163/419 (38%), Gaps = 12/419 (2%)

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
            W+  +                  +    +       ++ +  +E ++    ++ ++  +
Sbjct: 528 TWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISFRKALSDSLPN 587

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--NTPSVMNHYLTEILSLDL 521
              ++N +G ++S N A    F          P         +  S  +    E      
Sbjct: 588 PTYVVNWQGNVISHNSAFEHYFTADYYKNAMLPLENSDSPFKDVFSNAHEVTAETKENRT 647

Query: 522 RQTLEKIT-LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
             T       G  K        +        + Y     DI+E +   + L   +  A  
Sbjct: 648 IYTQVFEIDNGIEKRCINHWHTLCNLPASDHAVYICGWQDITETRDLIHALEVERNKAIN 707

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            +  KS FLA +SHEIRTP+++I+GF E++       L   + +E  +    +G  +L +
Sbjct: 708 ATVAKSQFLATMSHEIRTPISSIMGFLELLS---GSGLSKEQRVEAISLAYSTGQSLLGL 764

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILA 699
           + ++LD+ KIESG   L  + V +   V          A  K I +  S    +   +  
Sbjct: 765 IGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALICSSTFPDHYLVKI 824

Query: 700 DLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMTNYELEKA 756
           D ++ KQ+  N+LSNA+ FT  G  +I  S  H  +   ++   + D+G G++  E ++ 
Sbjct: 825 DPQAFKQVLSNLLSNALKFTTEGAVKITTSLVHIDDNHAVIKMTIMDSGSGLSQEEQQQL 884

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            K + Q   S   +  G+GLGL + K ++    G   + S P  GT   I  P+  +  
Sbjct: 885 FKRYSQT--SAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVEISQQ 941


>gi|331016785|gb|EGH96841.1| sensor histidine kinase/response regulator GacS [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 917

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 76/243 (31%), Positives = 140/243 (57%), Gaps = 8/243 (3%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  A+K A + S  KS+FLA +SHEIRTPL +I+GF+ +++     P    R  +Y   
Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNSILGFTHLLQKSELTP----RQFDYLAT 325

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I++S + +L I+N++LD SKIE+GK+ L   P +L + + + ++++   A+ K + + + 
Sbjct: 326 IEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKHLELVSL 385

Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQI---IISTTHTSNEEVILRVRDTG 745
              + P  +  D   ++QI  N++SNAI FT  G  +   ++      + ++ + V+DTG
Sbjct: 386 VYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAMLEDETEEHAQLRISVQDTG 445

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+++ ++    + F Q  NS   +  GTGLGL ++K +++   G+  + STP +G+   
Sbjct: 446 IGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFW 505

Query: 806 IIF 808
           I  
Sbjct: 506 ISL 508


>gi|300022124|ref|YP_003754735.1| PAS/PAC sensor hybrid histidine kinase [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299523945|gb|ADJ22414.1| PAS/PAC sensor hybrid histidine kinase [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 630

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 89/509 (17%), Positives = 185/509 (36%), Gaps = 44/509 (8%)

Query: 321 LTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
           +    +    +    +   G +   NP+   +  Y + + ++    +S L+  P  + ++
Sbjct: 1   MLQALLKSAVVAILAIDDRGRVRTVNPAAERMFGYTAEEMLDRN--VSMLMPEPYRTQHD 58

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
                 +   ++  I     +   + +                +       +GI  +   
Sbjct: 59  HYMERYVQTGEKRIIGIGREVAGQRKDGS---IFPIHLAVGEFEMQGERFFSGIITDLSA 115

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
               + +++ + +   ++ +   + + I   EG I+  N A +++FGY   + +   +T 
Sbjct: 116 HARLQAEIDRQSLLFQAVFDYVPETLVISAPEGQIVLINPAATRMFGYSASEAIGLDWTT 175

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YS 555
             +                     ++E  T+   K+ +    +  I  +  +        
Sbjct: 176 LFDAPPDKAQLEKEIASKHAADGGSVEISTVLRRKDGRTFPAQGHIAVIAGADGTQMAVV 235

Query: 556 LTMHDIS-EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
               D++ E K+ ++ L   K                ++H+    LT I G  E+++   
Sbjct: 236 SLFRDMTDEMKRRESSLRLQKLE------AVGQLTGGIAHDFNNLLTIISGNLELLE--- 286

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
            G + NP   E  +   R+ +    +   LL  ++    +  L  E ++L+E V     L
Sbjct: 287 -GTIENPDDRELLSRAMRAADSGARLTRRLLTFAR----RRQLAPEVINLNEQVRSMTEL 341

Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT---- 730
           +        I ++TSFA ++    AD   V+   +N+  NA    P+GG++ I T+    
Sbjct: 342 L-HRTLGATIDLQTSFARDLWLTRADAGEVESAVINLAINARDAMPNGGKLAIRTSNAAL 400

Query: 731 ----------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
                       + + V + V D G GMT   L +  +PF          G GTGLGL  
Sbjct: 401 EGDEVGFEGPLVAGDYVRVSVSDNGSGMTKDVLGRVFEPFFTTKPP----GRGTGLGLST 456

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
               +  + G   I+S P  GT + + FP
Sbjct: 457 IYGFIKQSGGSITIYSEPGAGTTVNLYFP 485



 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/308 (10%), Positives = 80/308 (25%), Gaps = 18/308 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G ++ ++    +  G  A +M+   +  +    +   ++H  +    +    G+  
Sbjct: 16  IDDRGRVRTVNPAAERMFGYTAEEMLDRNVSMLMPEPYRTQHDHYME----RYVQTGEKR 71

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFS--GFRGF-GIVHVNRVDNDPRALGKRLDKKFS 205
           +  I         D +  PI+    EF   G R F GI+         +A   R    F 
Sbjct: 72  IIGIGREVAGQRKDGSIFPIHLAVGEFEMQGERFFSGIITDLSAHARLQAEIDRQSLLFQ 131

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPP------HLRMKNKVSSLTEYYAHKDDVLKTEKY 259
            + +       +   +  I                       +           L+ E  
Sbjct: 132 AVFDYVPETLVISAPEGQIVLINPAATRMFGYSASEAIGLDWTTLFDAPPDKAQLEKEIA 191

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
               ++  S+         +   +  + +   +          +S     +      E  
Sbjct: 192 SKHAADGGSVEISTVLRRKDGRTFPAQGHIAVIAGADGTQMAVVSLFRDMTDEMKRRESS 251

Query: 320 NLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
               +            + G     N    +++    + +  I       L +  +   +
Sbjct: 252 LRLQKL-----EAVGQLTGGIAHDFNNLLTIISGNLELLEGTIENPDDRELLSRAMRAAD 306

Query: 380 AIKPVMLY 387
           +   +   
Sbjct: 307 SGARLTRR 314


>gi|13471100|ref|NP_102669.1| two component sensor-kinase [Mesorhizobium loti MAFF303099]
 gi|14021844|dbj|BAB48455.1| two component sensor-kinase [Mesorhizobium loti MAFF303099]
          Length = 993

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 94/677 (13%), Positives = 216/677 (31%), Gaps = 50/677 (7%)

Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ----- 228
             S F    +  ++R         +   ++   + +             +          
Sbjct: 333 AISAFSALIVAAISRQHQQAVLTLRESQRQLQQMIDALPVRVWSATPAGEPLYFNKRYQD 392

Query: 229 ------SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQ 282
                      LR  +    +      +D               S+   +      +   
Sbjct: 393 HFRSVIRNFESLRTPSIDGLVHGLAHPEDAPEVQRTLRACFESGSAAVMRFRLLEKDGAY 452

Query: 283 YTKKQYFGTLQNNSKESFEYLSHRNHP----SLSAYFDEGENLTPETVDKCPIPFF-VYS 337
              +      +++     E+                  E E    + VD  P+    +  
Sbjct: 453 RWSECRVEPRRDDDGAVAEWYGVSVDIDDEVRAQQALRERERELSQLVDMVPVQIRRLTP 512

Query: 338 HGNLFYANPSFLLLTKYKSVDDIEIAGG--LSTLLDAPKLSDNNAIKPVMLYRSDRTCIA 395
            GN  + N   L       +  ++  G   L+  + +    ++ A     +  S  T   
Sbjct: 513 EGNPTFFNKRLLDFFGLNDLAQLDKPGMSRLAAAITSLVHPEDTARLLETVRHSLATGEP 572

Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
             +  + ++        +        +Q    +    I  +  D       +     ++ 
Sbjct: 573 Y-STKYRMRRADGAYRWVDGRGEPVRDQSGAIVQWFAISIDVDDEMRLYSDLAEREAKIR 631

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR--KPFTVFLEQNTPSVMNHYL 513
            ++++   GI I + +G ++  N A  ++      D+    + F +   +          
Sbjct: 632 RLVDSDIIGIVIWDLDGRLIDANDAFLRMVQCDRADLQAGLRWFDMTPPEWQEVHAREEA 691

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY-SLTMHDISEWKQEKNKLS 572
            E+ +    Q  EK      K+   + + I        S      + D++E K+ +    
Sbjct: 692 EELKATGKMQAREKEFF--RKDGSRIPVLIGAACFEGQSKQGVAYILDLTERKRAEAAQV 749

Query: 573 HAKKIAEKESSH---------KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN-PR 622
            A++   + S            ++  A ++HE+  PL A++  S   +        N  R
Sbjct: 750 RAEEALRRASEELARAMNAASLAELSASIAHEVNQPLAAVVANSNACERWLMAEPPNVQR 809

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             +    I R  N   D+V+ +  + K +S    L      L   V +A +L+   A   
Sbjct: 810 AQKIVGRIIRDANSAADVVSRIRALFK-QSLDARLDTT---LGGVVDQARTLMAEEAARS 865

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVIL 739
           R+ I      ++P I  D   ++Q+ +N++ N I      G    + +   H   + +  
Sbjct: 866 RVPINIDVERDLPVIALDRVQIQQVLVNLMRNGIEAMDGVGDPKSLAVRV-HRVGDAIQT 924

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V D G G+   +L++  +PF         + +G G+GL +++++V+++ G+ ++     
Sbjct: 925 EVSDWGPGV--EQLDRMFEPFFTT------KEQGMGMGLAISRSIVESHGGRLWVEKNEP 976

Query: 800 KGTLIEIIFPLYDTSHP 816
           +G       P+     P
Sbjct: 977 RGATFIFTLPVETEKAP 993



 Score = 97.4 bits (241), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 37/415 (8%), Positives = 100/415 (24%), Gaps = 39/415 (9%)

Query: 79  IPRTVRFTWNIDAHGYLKEISEELPK--------TIGNYAFKMIGMRLCDVSDILH-IDP 129
               VR  W+    G     ++                    + G  +  ++      + 
Sbjct: 368 DALPVR-VWSATPAGEPLYFNKRYQDHFRSVIRNFESLRTPSIDG-LVHGLAHPEDAPEV 425

Query: 130 NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRV 189
              +    +  +    +  L   +G   Y   +    P    +   + + G  +      
Sbjct: 426 QRTLRACFESGSAAVMRFRLLEKDG--AYRWSECRVEPRRDDDGAVAEWYGVSV--DIDD 481

Query: 190 DNDPRALGKRLDKKFSHLHEIKK-GHSSVEKEKYDIFSQQSP-----------PPHLRMK 237
           +   +   +  +++ S L ++       +  E    F  +                  M 
Sbjct: 482 EVRAQQALRERERELSQLVDMVPVQIRRLTPEGNPTFFNKRLLDFFGLNDLAQLDKPGMS 541

Query: 238 NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297
              +++T     +D     E      +       +      +            +++ S 
Sbjct: 542 RLAAAITSLVHPEDTARLLETVRHSLATGEPYSTKYRMRRADGAYRWVDGRGEPVRDQSG 601

Query: 298 ESFEYLSHRNHPSLSAY----FDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLT 352
              ++ +                E E      VD   I   ++   G L  AN +FL + 
Sbjct: 602 AIVQWFAISIDVDDEMRLYSDLAEREAKIRRLVDSDIIGIVIWDLDGRLIDANDAFLRMV 661

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
           +    D              P+  + +A +     ++     A        + +      
Sbjct: 662 QCDRADLQAGLRWFDM--TPPEWQEVHAREEAEELKATGKMQAREKEFF--RKDGSRIPV 717

Query: 413 MT---FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
           +        +        +     +  +      +  +     +L   + A S  
Sbjct: 718 LIGAACFEGQSKQGVAYILDLTERKRAEAAQVRAEEALRRASEELARAMNAASLA 772



 Score = 62.7 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/408 (8%), Positives = 92/408 (22%), Gaps = 41/408 (10%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMR--------LCDVSDILHIDPNNH-IGDLLK 138
            +   G     ++ L    G      +           +  +            +   L 
Sbjct: 509 RLTPEGNPTFFNKRLLDFFGLNDLAQLDKPGMSRLAAAITSLVHPEDTARLLETVRHSLA 568

Query: 139 RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
               +  K  +   +G   Y  +D    P+  ++      + F I      +    +   
Sbjct: 569 TGEPYSTKYRMRRADG--AYRWVDGRGEPVRDQSGAIV--QWFAISIDVDDEMRLYSDLA 624

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP------PHLRMKNKVSSLTEYYAHKDD 252
             + K   L +       +      +                 ++  +           +
Sbjct: 625 EREAKIRRLVDSDIIGIVIWDLDGRLIDANDAFLRMVQCDRADLQAGLRWFDMTPPEWQE 684

Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY-LSHRNHPSL 311
           V   E+   L +       +++F   + ++          +  SK+   Y L        
Sbjct: 685 VHAREEAEELKATGKMQAREKEFFRKDGSRIPVLIGAACFEGQSKQGVAYILDLTERKRA 744

Query: 312 SAYF----DEGENLTPETVDKCPIPFFVYSHGNL----------FYANPSFLLLTKYKSV 357
            A      +     + E               ++            AN +          
Sbjct: 745 EAAQVRAEEALRRASEELARAMNAASLAELSASIAHEVNQPLAAVVANSNACERWLMAEP 804

Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
            +++ A  +   +     S  + +  +               L  +       +A     
Sbjct: 805 PNVQRAQKIVGRIIRDANSAADVVSRIRALFKQSLDARLDTTLGGVVDQARTLMAEEAAR 864

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465
                          I  + V  +     +      + + +EA  DG+
Sbjct: 865 SRVPINIDVERDLPVIALDRVQIQQVLVNL------MRNGIEAM-DGV 905


>gi|227812276|ref|YP_002812286.1| sensor protein TorS [Vibrio cholerae M66-2]
 gi|298499508|ref|ZP_07009314.1| TMAO reductase system sensor TorS [Vibrio cholerae MAK 757]
 gi|227011418|gb|ACP07629.1| sensor protein TorS [Vibrio cholerae M66-2]
 gi|227015228|gb|ACP11437.1| sensor protein TorS [Vibrio cholerae O395]
 gi|297541489|gb|EFH77540.1| TMAO reductase system sensor TorS [Vibrio cholerae MAK 757]
          Length = 1020

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 72/238 (30%), Positives = 118/238 (49%), Gaps = 8/238 (3%)

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
           ++ AE+ S  KS FLA +SHEIRTP+  ++G + ++++             Y   I+RSG
Sbjct: 496 RQQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLQDTTLTST----QQHYVQVINRSG 551

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
             +L I+ND+LD SKIE+G + +H     L   VSE   L+Q  A EK I +      ++
Sbjct: 552 RSLLAILNDVLDYSKIEAGHLEIHHTHFDLYRLVSETHELMQSRAREKGITLTYHIDEDV 611

Query: 695 PRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-VILRVRDTGVGMTNYE 752
            +    D   + Q+  N++ N I FT  G ++ I      + + +   V D+G+G+   E
Sbjct: 612 TQYWQGDEIRIGQVLNNLVGNGIKFTDQG-EVRIRIRLAPDGQGIRFAVEDSGIGIAEEE 670

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
                  F Q    +  +  GTGLGL +++ +V A  G+  + S   +G+      PL
Sbjct: 671 QATLFDAFTQADAGR-RKLGGTGLGLAISRKLVQAMGGELQLASQLGQGSCFWFTLPL 727


>gi|150005262|ref|YP_001300006.1| two-component hybrid sensor kinase/response regulator [Bacteroides
           vulgatus ATCC 8482]
 gi|149933686|gb|ABR40384.1| two-component system sensor histidine kinase, with response
           regulator receiver domain [Bacteroides vulgatus ATCC
           8482]
          Length = 1045

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 90/417 (21%), Positives = 163/417 (39%), Gaps = 36/417 (8%)

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE---------ATSD 463
           +        N   E    +    +  +    ++ +     +L   LE            D
Sbjct: 500 VNIFYDVVLNCSTEPDTVDVFCMDSTELHNAQQMLSATNHKLSMALEVANIVPWKWNLKD 559

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ---NTPSVMNHYLTEILSLD 520
              + +    I+        + G   ED L      +  +        +     ++    
Sbjct: 560 HTILCDLNRPIVMA-----AMPGSISEDQLSVSDEQYFAKIIKEDRPRVIQAYRDLADGK 614

Query: 521 LRQTLEKITLGSTKEEKLLSLRII----IKKLPFSSCYSLTMHD----ISEWKQEKNKLS 572
           + +  E        +     +  I      +    +   LT+      I+E K+ +++L 
Sbjct: 615 IEKVKE-EYRVLANDGTQWKIDWIEAQAAVESKDENGMPLTLVGSSLVITERKKMEDELL 673

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
            AK  AE+ +  KS FLA +SHEIRTPL AIIGFS ++              EY N I+ 
Sbjct: 674 SAKDRAEESNRLKSAFLANMSHEIRTPLNAIIGFSNILAAAEEEQE----KQEYINIIES 729

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
           +  L+L +++D+LD+SKIE+G +   +  + L++ +SE  S+ +       I +      
Sbjct: 730 NNTLLLQLISDILDLSKIEAGTLEFSYCNIELNDIISEIESVTRYRTESNGIQLIVQKGL 789

Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752
               I  +   + Q+  N+L+NA  FT  G  I          E+   V+DTG G+   +
Sbjct: 790 PSCLIRTEKNRLMQVLNNLLNNASKFTSQGS-ITFGYKLCDK-ELYFYVKDTGCGIPADK 847

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +      F ++ +      +GTGLGL + + +V+   G+  + S   KG+      P
Sbjct: 848 VNSIFGRFVKLNSF----VQGTGLGLSICQTIVEHMGGRIGVESEEGKGSTFWFTIP 900


>gi|294055632|ref|YP_003549290.1| histidine kinase [Coraliomargarita akajimensis DSM 45221]
 gi|293614965|gb|ADE55120.1| histidine kinase [Coraliomargarita akajimensis DSM 45221]
          Length = 438

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 79/363 (21%), Positives = 142/363 (39%), Gaps = 27/363 (7%)

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
             Q+ ++L +  + + I + E  I   N +  +LF +    +        L   +     
Sbjct: 79  SNQIEAVLGSIQEAVLIFDAERTIEFANESAQRLFQH-GRLLKGARLESALRSPS----- 132

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLR---IIIKKLPFSSCYSLTMHDISEWKQE 567
             L E L+      L +ITL    E+         +       +S   L +HDI+  K  
Sbjct: 133 --LLEFLNGTDSSHLRQITLERKGEQLWFEASSAQVRGSARQDASSTILVLHDITRLKSL 190

Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
           +                + +F+A VSHE+RTPLT I GF+E +       L       + 
Sbjct: 191 EMV--------------RREFVANVSHELRTPLTIIKGFAETLVEDN-ASLPVEARARFL 235

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
             I  +   +  +V DLL +S++ES    +  +  SL + + + I       N     I 
Sbjct: 236 EKILNNAERLHVLVEDLLTLSRLESKPDQVDPQLYSLRQLMEDTIENYSSRLNPGVQAIE 295

Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-TSNEEVILRVRDTGV 746
             + + +     D   + Q+  N++ N   + P   Q+ +S  +    + V   V+D G 
Sbjct: 296 LKYDDRVGDFSFDRFRLNQVVDNLIENTFRYAPEFTQLSLSVDYDEETDFVECSVQDDGP 355

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+   ++    + F ++   +     GTGLGL + K +V  + G  +  S   +GT I  
Sbjct: 356 GIPAKDVPHIFERFYRVDKGRSRERGGTGLGLSIMKHIVQLHGGTVWAESELGEGTKICF 415

Query: 807 IFP 809
             P
Sbjct: 416 TLP 418


>gi|260899517|ref|ZP_05907912.1| sensor protein TorS [Vibrio parahaemolyticus AQ4037]
 gi|308107606|gb|EFO45146.1| sensor protein TorS [Vibrio parahaemolyticus AQ4037]
          Length = 573

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 75/242 (30%), Positives = 124/242 (51%), Gaps = 7/242 (2%)

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
           +  AE+ S  KS FLA +SHEIRTP+  ++G + ++ +    P+       YA  I+RSG
Sbjct: 45  RNEAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLMDSGLNPI----QKRYAEIINRSG 100

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
             +L I+ND+LD SKIE+G + +      L + V +   L+   A EK++L      +++
Sbjct: 101 KTLLAILNDVLDYSKIEAGHLEIRRLGFDLHQMVEDTFQLMNSRAQEKQLLFSYHIESDV 160

Query: 695 PRIL-ADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVILRVRDTGVGMTNYE 752
            R    D+  + Q+  N++ NAI FT  G   I +S       +V+  V DTG+G++  +
Sbjct: 161 SRYWKGDVTRISQVLNNLVGNAIKFTEDGEIDIYVSLNPEDESQVLFEVSDTGIGISKKD 220

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
            +     F Q       +  GTGLGL ++K +V+A  G   + S   +G+      PL +
Sbjct: 221 QKTLFDAFTQAEGGLN-QIGGTGLGLAISKRIVEAMGGVLEVDSEEGEGSRFWFSIPLEE 279

Query: 813 TS 814
           + 
Sbjct: 280 SE 281


>gi|182412755|ref|YP_001817821.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
 gi|177839969|gb|ACB74221.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
          Length = 760

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 90/643 (13%), Positives = 203/643 (31%), Gaps = 49/643 (7%)

Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM--KNKV 240
           ++H+     D   +  RL + +      +       +   D            +   + +
Sbjct: 3   VLHLEDSTPDAELVAARLTQDWPECQIQRAASRQQFESALDTGDFDLILSDYTLHGYDGL 62

Query: 241 SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF 300
           S+L     H  +         +  E +    +       +     +      Q  ++   
Sbjct: 63  SALDLARTHCPEKPFIFLSGTIGEERAIEALKRGATDYVIKDRPSRLVPAMRQALARSQE 122

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDI 360
           E    R   +L    +    +     D       + S  +  YANP++            
Sbjct: 123 EQRLRRTEEALRQNRERFRQIAENVADLI---VMLDSSAHCLYANPAYATAVG------- 172

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
                    + A    D+ A    +   +        A       +      +       
Sbjct: 173 RPHDCTGRDVFADVHPDDRAAVEKLFRATLHQGRNGRAEYRLAHADG-TVRYVEAQASAV 231

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
            +          +  +  + R  + ++  +     ++L+   D I + + E  +   NR+
Sbjct: 232 RDFSGTITQVLIVARDVTEQRAARERIRQQ----AALLDHAQDAILVRDMEDRVTYWNRS 287

Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
            ++++G+  E+  ++       +    V       +   +    + + +           
Sbjct: 288 AARIYGWADEEPRQRRAADLWMEEPGQVEIARNATLFYGEWMGEMRQRSREEVDLIMQSR 347

Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
             ++ +    ++ + +   DI+E K+ + +    ++     +         V+H+I   L
Sbjct: 348 WSLLQRPDGSAAGFLVINTDIAEKKRLEAQFLRVQR-----TESIGLLAGGVAHDINNVL 402

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
             I+  +E+++        +P   ++   I  S      +V  LL  ++   G+      
Sbjct: 403 LPIMASTELLE----PMATSPETKQFLASIRSSAQHGAALVRQLLAFARGAVGQH----T 454

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720
            V L   + + +  V        I +  +       +  D   +KQ+ +N+  NA    P
Sbjct: 455 DVMLRPLLEDFVGFVNQTFPR-SISVSLAPGEAPWAVRGDATQLKQVLMNLCINARDAMP 513

Query: 721 SGGQIIIST--------------THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
            GG+I +                       V++ V DTG GM+   LE+   PF      
Sbjct: 514 EGGRITLHVTNTLVNEVEAARLREIKPGPHVVIEVADTGSGMSPAVLERIFDPFFTTK-- 571

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
               G+GTGLGL   + +V  + G   + S P +GT  +I  P
Sbjct: 572 --EVGKGTGLGLAAVRGIVKGHNGTIAVESWPGRGTNFKIYLP 612



 Score = 51.2 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 32/388 (8%), Positives = 81/388 (20%), Gaps = 35/388 (9%)

Query: 96  KEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGT 155
              +      +G            DV               L +      +  L   +GT
Sbjct: 161 LYANPAYATAVGRPHDCTGRDVFADVHPDDRAAVEKLFRATLHQGRNGRAEYRLAHADGT 220

Query: 156 NLYVPIDLAALPIYSRNREFSG----FRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
             Y  ++  A  +   +   +      R        R     +A      +    + +++
Sbjct: 221 VRY--VEAQASAVRDFSGTITQVLIVARDVTEQRAARERIRQQAALLDHAQDAILVRDME 278

Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271
              +   +    I+      P  R    +                     +         
Sbjct: 279 DRVTYWNRSAARIYGWADEEPRQRRAADLWMEEPGQVEIARNATLFYGEWM--------G 330

Query: 272 QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI 331
           +    +        +  +  LQ     +  +L      +     +        T      
Sbjct: 331 EMRQRSREEVDLIMQSRWSLLQRPDGSAAGFLVINTDIAEKKRLEAQFLRVQRT-----E 385

Query: 332 PFFVYSHGNLFYANPSFLLLTKYKS-VDDIEIAGGLSTLLDAPKLSDNNAIKPVM--LYR 388
              + + G     N   L +      ++ +  +      L + + S  +    V   L  
Sbjct: 386 SIGLLAGGVAHDINNVLLPIMASTELLEPMATSPETKQFLASIRSSAQHGAALVRQLLAF 445

Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
           +       +  +                P   +           +  +    +     + 
Sbjct: 446 ARGAVGQHTDVMLRPLLEDFVGFVNQTFPRSISVSLAPGEAPWAVRGDATQLKQVLMNLC 505

Query: 449 IEVMQLCSILEATSDGIAIINREGIILS 476
           I         +A  +G       G I  
Sbjct: 506 INAR------DAMPEG-------GRITL 520



 Score = 40.0 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 27/245 (11%), Positives = 50/245 (20%), Gaps = 7/245 (2%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D    +   +    +  G    +    R  D+               L     W G+   
Sbjct: 276 DMEDRVTYWNRSAARIYGWADEEPRQRRAADLWMEEPGQVEIARNATLFYGE-WMGEMRQ 334

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
              E  +L +    + L     +   +GF    I           A   R+ +  S    
Sbjct: 335 RSREEVDLIMQSRWSLL--QRPDGSAAGF--LVINTDIAEKKRLEAQFLRVQRTESIGLL 390

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
                  +      I +       +    +                     LL     ++
Sbjct: 391 AGGVAHDINNVLLPIMASTELLEPMATSPETKQFLASIRSSAQHGAALVRQLLAFARGAV 450

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY--LSHRNHPSLSAYFDEGENLTPETVD 327
            +  D     L +        T   +   S              +       NL     D
Sbjct: 451 GQHTDVMLRPLLEDFVGFVNQTFPRSISVSLAPGEAPWAVRGDATQLKQVLMNLCINARD 510

Query: 328 KCPIP 332
             P  
Sbjct: 511 AMPEG 515


>gi|296446460|ref|ZP_06888404.1| PAS/PAC sensor signal transduction histidine kinase [Methylosinus
           trichosporium OB3b]
 gi|296256095|gb|EFH03178.1| PAS/PAC sensor signal transduction histidine kinase [Methylosinus
           trichosporium OB3b]
          Length = 352

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 78/367 (21%), Positives = 151/367 (41%), Gaps = 33/367 (8%)

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLF-GYPVEDILRKPFTVFLEQNTPSVM 509
              L  +++A  + + +I+ E  I++ NR+   +     V D L +             +
Sbjct: 11  EALLGLVIDALPEAVFVIDSEARIVAANRSARSVLPSLRVNDPLARSLRS-------PDV 63

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF-SSCYSLTMHDISEWKQEK 568
              L  +L     + +  I +     E    + I   +L    +    ++ D++E ++ +
Sbjct: 64  LDALERVLRGGAPEKV--IWVERLPVECWFEVHIAPLRLDGYENAAVASLRDLTESRRVE 121

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE-YA 627
                           + DF+A  SHE+RTPL +++GF E ++        + +  E + 
Sbjct: 122 --------------RMRVDFVANASHELRTPLASLLGFVETLQ---GPARDDAKARERFL 164

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
           + +      +  +V+DLL +S+IE         PV L   V+  +  +   A +  I ++
Sbjct: 165 SIMREQAQRMSRLVDDLLSLSRIEQHLHLRPDTPVDLAILVAHIVDTLGPMAEDSGIELK 224

Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747
              A     +  D   + ++A N++ NAI +    G + IS         +  VRD G G
Sbjct: 225 LD-ATGPVVVPGDRDELARVAENLIENAIKYGA--GPVEISLAPL-GASAVFSVRDHGPG 280

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           ++   L +  + F ++   +     GTGLGL + K +V  + G+  I S P KG    + 
Sbjct: 281 ISPEHLPRLTERFYRVDAGKSRAKGGTGLGLAIVKHIVARHRGRLAIDSAPDKGATFRVF 340

Query: 808 FPLYDTS 814
            PL +  
Sbjct: 341 LPLAEAE 347



 Score = 40.8 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 46/149 (30%), Gaps = 9/149 (6%)

Query: 313 AYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDD-----IEIAGGL 366
               +GE L    +D  P   F + S   +  AN S   +     V+D     +     L
Sbjct: 5   RRRYQGEALLGLVIDALPEAVFVIDSEARIVAANRSARSVLPSLRVNDPLARSLRSPDVL 64

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
             L    ++    A + V+              +  ++ +   + A+  +     ++  E
Sbjct: 65  DAL---ERVLRGGAPEKVIWVERLPVECWFEVHIAPLRLDGYENAAVASLRDLTESRRVE 121

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
            M  + +     + R     +   V  L 
Sbjct: 122 RMRVDFVANASHELRTPLASLLGFVETLQ 150


>gi|153872627|ref|ZP_02001464.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
 gi|152070909|gb|EDN68538.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
          Length = 458

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 94/418 (22%), Positives = 160/418 (38%), Gaps = 51/418 (12%)

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471
            +T            N     ++ +  +       +     +    +   +DG+   N E
Sbjct: 46  ILTTKDEIGELTMAFNKMAQLLKNQMAELEAANGLLRKSEERFELAMRGANDGLWDWNIE 105

Query: 472 GIILSTNRAVSKLFGYPVEDILR-KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530
             I   +    K+ G+  +++     F   + +     +N      L   +  T +    
Sbjct: 106 TNIAYVSPRFKKILGFHEDELKYPAEFIPRIHKEDLKQVNETRNTYLEKKIP-TYDITYR 164

Query: 531 GSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLS-------------- 572
              K    + L      +            T+ DIS  K  +  L               
Sbjct: 165 VQHKAGHFVWLLSRATAVWNEQDKPIRLIGTIVDISAQKNAEANLQKTVDILRKTIISAE 224

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
            +K  AE  +  KS FLA +SHE+RTPL  I+G+++++   R       +  E  + I R
Sbjct: 225 QSKIEAENANRAKSTFLANMSHELRTPLNGILGYTQILNRDR---TLTEKQQEGIDIIHR 281

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
           SG  +L ++ND+LD+SKIE+ K+ L+       + +     L Q+ A +K I       +
Sbjct: 282 SGEYLLTLINDILDLSKIEADKIELYPTDFHFSQFIQTITELFQMRAQQKGIAFVYEPLS 341

Query: 693 NIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEE-------------- 736
           ++P  + AD + ++QI +N+L NAI FT  GG  + I                       
Sbjct: 342 HLPTGVRADEKRLRQILINLLGNAIKFTDKGGVTLKIGVLKEKGGRIKVAGERGQEQGES 401

Query: 737 -----------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
                      +  ++ DTG G+    LEK   PF Q+   Q  R EGTGLGL + + 
Sbjct: 402 NQNYAQLPITTIEFQIIDTGAGIAADNLEKIFMPFQQV-GDQNHRAEGTGLGLSITQN 458


>gi|239993827|ref|ZP_04714351.1| sensor protein BarA [Alteromonas macleodii ATCC 27126]
          Length = 983

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 79/244 (32%), Positives = 134/244 (54%), Gaps = 9/244 (3%)

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
            +L  A+K A K S+ KS FLA +SHEIRTPL AI+GFS+ + N            E   
Sbjct: 356 ARLDIARKDAIKASNVKSQFLANMSHEIRTPLNAILGFSKELNNASLPT----DQQEQVR 411

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            ++ + + +L IVND+LD SKIE+GK+ ++ +P S ++ + E ++++   ++ KRI    
Sbjct: 412 IVNTAADNLLTIVNDILDFSKIEAGKLQINNQPFSPNKLLEEMVTIMAKSSHSKRIEFVF 471

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT--SNE--EVILRVRDT 744
                  +++ D+  +KQ+  N+LSNA+ FT SG  I  S +     +   EV + V DT
Sbjct: 472 DLHPLPEKLIGDVFRIKQVLNNLLSNALKFTSSG-TITFSVSGRSLPHGIHEVNITVEDT 530

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G++  + +K    F Q+ ++     +GTGLGL +++ +V    G   + S   +G+  
Sbjct: 531 GIGISRQDRKKLFNAFSQVDDALNRNYQGTGLGLVISRELVRLMNGDLTLKSVLGQGSTF 590

Query: 805 EIIF 808
            +  
Sbjct: 591 NVSL 594


>gi|194290066|ref|YP_002005973.1| sensory histidine kinase in two-component regulatory system with
           phob [Cupriavidus taiwanensis LMG 19424]
 gi|193223901|emb|CAQ69910.1| sensory histidine kinase in two-component regulatory system with
           PhoB [Cupriavidus taiwanensis LMG 19424]
          Length = 460

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 75/408 (18%), Positives = 159/408 (38%), Gaps = 35/408 (8%)

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDT-----RINKRKMEIEVMQLCSILEATSDGI 465
                +      + P  +   G     +       R    ++E +  +    ++A+ +G+
Sbjct: 52  RLWKVLDAPVYGEIPSALGLWGEVYYRLHRLVKRWRTQVLQVEQQHTRFIQAIQASPNGV 111

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
            +++    I   N    + FG      +R+  T  +         HYLT        Q  
Sbjct: 112 LMLDDADQIEWCNDVAEQHFGLNARRDVRQRITHLIR---RPEFVHYLTR-------QQF 161

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
           +   +     E   S+  +       +   +   DI++ +  +              + +
Sbjct: 162 DDPLVMRDMGEHKHSVIAVQILPYGDNRKLVITQDITKLENTE--------------AMR 207

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
            DF+A VSHE++TPLT + GF E +++    P+       Y + +      +  IV DLL
Sbjct: 208 RDFVANVSHELKTPLTVMTGFLETVRD---LPVSEEDRRRYIDMMLAQSVRMQSIVEDLL 264

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
            ++K+ES       + V +   V+  +   +  +  +   +       +  +      + 
Sbjct: 265 ALAKLESDAQPPGHDVVPIRAMVAHLMHDAEALSQGRH-HVSAEIDPTV-AMRGAETELM 322

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
               N++SNA+ +TP GG+I +          +  V DTG+G+    + +  + F ++  
Sbjct: 323 SALGNLVSNAVRYTPEGGRITMRLAWED-GHAVFSVADTGLGIAAEHIPRLTERFYRVDR 381

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
           S+     GTGLGL + K ++  +  +  + S   +G++  ++FPL  +
Sbjct: 382 SRSRDTGGTGLGLAIVKHVLSRHHAELRVTSEEGRGSVFRVVFPLERS 429


>gi|170725402|ref|YP_001759428.1| PAS/PAC sensor-containing hybrid histidine kinase [Shewanella
           woodyi ATCC 51908]
 gi|169810749|gb|ACA85333.1| PAS/PAC sensor hybrid histidine kinase [Shewanella woodyi ATCC
           51908]
          Length = 819

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 90/430 (20%), Positives = 163/430 (37%), Gaps = 41/430 (9%)

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI--INREGIILS-TNRA 480
                   G   +    +     + + +    + L+A   G     +N E   +   +  
Sbjct: 117 EENQCTITGSLTDRTQEKEALTALNLAIEARDNALDAGDIGNWQAELNSENEWIWSWDNR 176

Query: 481 VSKLFGYPVEDILR-KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
            +K+F    EDI     +   L  +        +   L     +   +       + +++
Sbjct: 177 ANKMFALQPEDIGNIDRWVQHLHPDDKEPAIDAIQHCLVTG--EIYNEQYRSVLPDGEVI 234

Query: 540 SLRIIIKKLPFSSCYSLTMH--------------------DISEW--KQEKNKLSHAKKI 577
            +    K           +                     D +E   K    +L  AK+ 
Sbjct: 235 YVHARAKIGRDDQNRICRIDGVCVNQTPFFNIQAKLQEANDQAEARVKARTLELQQAKER 294

Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
           AE+ +  KS FL+ +SHE+RTP+ A++G      +        P   +       S   +
Sbjct: 295 AEQANQTKSSFLSMMSHELRTPMNAVLGS----LDLLSLSKQTPESRDLIETATTSAKNL 350

Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR- 696
           + I+ND+LDI+KIE+GKM L     S+ E +   + +    AN KRI +  +    IP+ 
Sbjct: 351 IFILNDILDINKIEAGKMQLEQRDFSITEVIDNVVQIYYPLANGKRIKLDVTEDPTIPKY 410

Query: 697 ILADLRSVKQIALNILSNAIHFT----PSGGQIIISTTHTSNE----EVILRVRDTGVGM 748
           +  D   V+QI  N+L NA+ FT       G++ ++     +     +V   + D G+G+
Sbjct: 411 LEGDAVKVRQIIFNLLGNALKFTSTTTEKQGEVQLNINIVEHNSIIYKVAFSIVDNGIGI 470

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
                +K   PF Q   S      GTGLGL +   +     G+  + S P +G+  ++  
Sbjct: 471 EKETQKKLFTPFIQAQRSTTREYGGTGLGLAICGNLAQLMGGEIALTSCPNEGSTFKVEL 530

Query: 809 PLYDTSHPHD 818
           P + +    D
Sbjct: 531 PFWRSKQHTD 540


>gi|186681682|ref|YP_001864878.1| integral membrane sensor hybrid histidine kinase [Nostoc
           punctiforme PCC 73102]
 gi|186464134|gb|ACC79935.1| integral membrane sensor hybrid histidine kinase [Nostoc
           punctiforme PCC 73102]
          Length = 909

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 67/257 (26%), Positives = 133/257 (51%), Gaps = 17/257 (6%)

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
             L   K++A+  +  KS+FLA +SHE+RTPL  I+G++++++  +       +  +   
Sbjct: 256 RSLELKKELADTANRAKSEFLANMSHELRTPLNGILGYAQILQRDK---TLTDKQQDGLR 312

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I + G+ +L ++ND+LD+SKIE+ +M L+         +   + + ++ A++K I    
Sbjct: 313 IIHQCGSHLLTLINDILDLSKIEAQRMELYKSDFHFPAFLQSVVEICRIRADQKGISFIY 372

Query: 689 SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN-----------EE 736
              + +P  + AD + ++Q+ +N+L NAI FT  GG +  + +                +
Sbjct: 373 QPTSELPIGVWADEKRLRQVLINLLGNAIKFTEKGG-VRFTISSVDQLLTNESNQKPIHK 431

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           +  ++ DTG+GM+  ++ K   PF Q+    + + EGTGLGL +++ +V        + S
Sbjct: 432 IRFQIIDTGIGMSQEQVAKIFLPFEQV-GEVKKQSEGTGLGLAISQRIVQLMDSTIQVKS 490

Query: 797 TPAKGTLIEIIFPLYDT 813
              +G+   I   L ++
Sbjct: 491 EIGQGSTFWIDLDLQES 507


>gi|262171204|ref|ZP_06038882.1| sensor histidine kinase [Vibrio mimicus MB-451]
 gi|261892280|gb|EEY38266.1| sensor histidine kinase [Vibrio mimicus MB-451]
          Length = 701

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 68/250 (27%), Positives = 118/250 (47%), Gaps = 10/250 (4%)

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           L   K  A+  +  KS FLA +SHEIRTP+  ++G ++++           +  ++   +
Sbjct: 308 LEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILLKDELTA----KQRQHLTSL 363

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
             SG  ++ ++N++LD SKIE GK  L + P  L   +    S+      EK +  +   
Sbjct: 364 YESGEHMMYLLNEILDYSKIEQGKFELDYSPFPLRSIIGSIKSIYSSLCFEKGLQFQLHS 423

Query: 691 AN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT---SNEEVILRVRDTGV 746
              +      D   ++QI  N+LSNA+ FT  G  + +  +         + ++V+D+G+
Sbjct: 424 DIIDTRWYYGDKARLRQIIFNLLSNAVKFTEQGF-VSVGLSEENIDDEYFLTIKVQDSGI 482

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+    L++  +PF Q  +    R  GTGLGL + K + +   G   + S   +GT  E+
Sbjct: 483 GIPQDALDRIFQPFEQAESHTTRRFGGTGLGLAIVKQIAELMSGTVSVQSEVGQGTCFEV 542

Query: 807 IFPLYDTSHP 816
              L   S P
Sbjct: 543 RVKLA-ASEP 551


>gi|172036100|ref|YP_001802601.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
           51142]
 gi|171697554|gb|ACB50535.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
           51142]
          Length = 850

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 84/291 (28%), Positives = 146/291 (50%), Gaps = 11/291 (3%)

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
             +    S +E + L L             +     I+E +Q   +   A++ AE+ +  
Sbjct: 430 WRRHHRPSERERRFLDLLARQAADLIEQRQA-----IAERQQLLEREQAAREDAEQANRI 484

Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
           K +FLA +SHE+R+PL  I+G+S +++ ++F P+      +  + I+R+  L   +++DL
Sbjct: 485 KDEFLAILSHELRSPLNPILGWSTLLQTKQFDPITT---KKGLSTIERNAKLQTQLIDDL 541

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704
           LDI++I  GK+ L    V+L   V  A+ +V+  A  K I ++      + ++  D   +
Sbjct: 542 LDIARILRGKLKLEETTVNLVTVVEGAMEVVRTTAEAKSIALQFEV-ITVCQVRGDEGRL 600

Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764
           +Q+  N+LSNAI FTP GGQ+ +       E+  L V+DTG G+++  L    + F Q  
Sbjct: 601 EQVVWNLLSNAIKFTPEGGQVGVRLEVN-GEQACLTVKDTGKGISSDFLPYLFQSFRQED 659

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIEIIFPLYDTS 814
            S   +  G GLGL + K +VDA+ G     S+   +G    + FP+    
Sbjct: 660 VSVTRQYGGLGLGLAIVKYIVDAHNGSITADSSGEGQGATFTVQFPVLQEE 710



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/179 (11%), Positives = 55/179 (30%), Gaps = 6/179 (3%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
                  P          E    +  +  +     +L   +E+   G    N     L  
Sbjct: 134 QRLERLVPCVERALQEAKEHRKRKAAETALRESEDRLRLAIESAQLGTWDWNLLTNELRW 193

Query: 478 NRAVSKLFGYPVE-DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
           +     +FG P E +   + F   L  +    ++  + + L+       +        E+
Sbjct: 194 DAGCKAMFGLPPEAETSIETFFQGLHPDDRQRLSQVVQDSLNPANGGIYDTEYRTIGFED 253

Query: 537 KL-LSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLA 590
            +   ++   +     S     +  T+ +I+E KQ + ++    +  +      +  ++
Sbjct: 254 HVERWIKAKGQVYLDESGTPFRFIGTVLEITEQKQAQRRMKADLQDTQVLQELSTRLIS 312


>gi|262382892|ref|ZP_06076029.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
 gi|262295770|gb|EEY83701.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
          Length = 1021

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 95/516 (18%), Positives = 190/516 (36%), Gaps = 49/516 (9%)

Query: 317 EGENLTPETVDKCPIPFFVYSHGN--------LFYANPSFLLLTKYKSVDDIEIAGGLST 368
              +   +  +  P+P+               +   N +F      K     +    ++ 
Sbjct: 385 RLLSRYRDLFNNMPLPYIRQRLIREGTQIDVQVLDVNHAFEEKIAPKDFVVNKRGKEIAN 444

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
           L+          +  V                            +  +P  + N      
Sbjct: 445 LIGGSY---PLLLSAVPTVLESGKSFTYEYYFEPT----GLYYTIIIMPTSEENV----- 492

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNR-------- 479
             +    +  D    +  ++    +L   LEA        N  EG I+  ++        
Sbjct: 493 -VDAFFIDITDIHKFQTHLKAMNHKLAMALEAADLLPWRYNLAEGKIIYESKVHPGDNIE 551

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST--KEEK 537
                      ++  K +   +  +  + +     ++ +  +++  ++  L      E++
Sbjct: 552 TAE----VHTHEVSLKEYFSKIHPSFRACVEKAFDDLCNGKIKKVRKEYCLERLIPGEDR 607

Query: 538 LLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
                I +     +S        +   I+E KQ ++ L  A+  AE+ +  KS FLA +S
Sbjct: 608 HEWEEIQVMAEYDASGKPKALIGSTISITERKQLEHDLRMARDKAEESNKLKSAFLANMS 667

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HEIRTPL AI+GFS ++ +            E+A+ I+ + +L+L ++ND+LD+SKIE+G
Sbjct: 668 HEIRTPLNAIVGFSNILASTD----DLEDKKEFADIIENNNSLLLQLINDILDLSKIEAG 723

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713
            +   ++ V ++  + +      L      + I          I  D   + Q+ +N+L+
Sbjct: 724 TLEFTYDYVDINAVLRDLEQSAHLKNKNPDVQISFKDYLEPCVIYTDRNRLSQLMINLLN 783

Query: 714 NAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
           NA+ FT +G  I+       +  +   V DTG G+   + +     F ++        +G
Sbjct: 784 NAMKFTQAGS-ILFGYKLKDDNTLWFYVEDTGCGIPENKRKDIFGRFVKLNTF----AQG 838

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           TGLGL + + +V    G   + S   KG+      P
Sbjct: 839 TGLGLSICEMIVTQMKGTIGVDSMEGKGSKFWFTLP 874


>gi|324117708|gb|EGC11607.1| response regulator receiver domain-containing protein [Escherichia
           coli E1167]
          Length = 1197

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 91/419 (21%), Positives = 165/419 (39%), Gaps = 12/419 (2%)

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
            W+  +                  +    +       ++ +  +E ++    ++ ++  +
Sbjct: 528 TWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISFRKALSDSLPN 587

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--NTPSVMNHYLTEILSLDL 521
              ++N +G ++S N A    F          P         +  S  +    E      
Sbjct: 588 PTYVVNWQGNVISHNSAFEHYFTADYYKNAMLPLENSDSPFKDVFSNAHEVTAETKENRT 647

Query: 522 RQTLEKIT-LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
             T       G  K        +       ++ Y     DI+E +   N L   K  A K
Sbjct: 648 IYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLINALEVEKNKAIK 707

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            +  KS FLA +SHEIRTP+++I+GF E++       L   + +E  +    +G  +L +
Sbjct: 708 ATVAKSQFLATMSHEIRTPISSIMGFLELLS---GSGLSKEQRVEAISLAYATGQSLLGL 764

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILA 699
           + ++LD+ KIESG   L  + V +   V          A  K I +  S    +   +  
Sbjct: 765 IGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPDHYLVKI 824

Query: 700 DLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMTNYELEKA 756
           D ++ KQ+  N+LSNA+ FT  G  +I  S  H  +   ++   + D+G G++  E ++ 
Sbjct: 825 DPQAFKQVLSNLLSNALKFTTEGAVKITTSLVHIDDNHAVIKMTIMDSGSGLSQEEQQQL 884

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            K + Q   S   +  G+GLGL + K ++    G   + S P  GT   I  P+  +  
Sbjct: 885 FKRYSQT--SAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVEISQQ 941


>gi|323944868|gb|EGB40934.1| response regulator receiver domain-containing protein [Escherichia
           coli H120]
          Length = 1127

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 91/419 (21%), Positives = 165/419 (39%), Gaps = 12/419 (2%)

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
            W+  +                  +    +       ++ +  +E ++    ++ ++  +
Sbjct: 458 TWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISFRKALSDSLPN 517

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--NTPSVMNHYLTEILSLDL 521
              ++N +G ++S N A    F          P         +  S  +    E      
Sbjct: 518 PTYVVNWQGNVISHNSAFEHYFTADYYKNAMLPLENSDSPFKDVFSNAHEVTAETKENRT 577

Query: 522 RQTLEKIT-LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
             T       G  K        +       ++ Y     DI+E +   N L   K  A K
Sbjct: 578 IYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLINALEVEKNKAIK 637

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            +  KS FLA +SHEIRTP+++I+GF E++       L   + +E  +    +G  +L +
Sbjct: 638 ATVAKSQFLATMSHEIRTPISSIMGFLELLS---GSGLSKEQRVEAISLAYATGQSLLGL 694

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILA 699
           + ++LD+ KIESG   L  + V +   V          A  K I +  S    +   +  
Sbjct: 695 IGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPDHYLVKI 754

Query: 700 DLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMTNYELEKA 756
           D ++ KQ+  N+LSNA+ FT  G  +I  S  H  +   ++   + D+G G++  E ++ 
Sbjct: 755 DPQAFKQVLSNLLSNALKFTTEGAVKITTSLVHIDDNHAVIKMTIMDSGSGLSQEEQQQL 814

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            K + Q   S   +  G+GLGL + K ++    G   + S P  GT   I  P+  +  
Sbjct: 815 FKRYSQT--SAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVEISQQ 871


>gi|323177504|gb|EFZ63092.1| sensor protein evgS [Escherichia coli 1180]
          Length = 1128

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 91/419 (21%), Positives = 165/419 (39%), Gaps = 12/419 (2%)

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
            W+  +                  +    +       ++ +  +E ++    ++ ++  +
Sbjct: 459 TWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISFRKALSDSLPN 518

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--NTPSVMNHYLTEILSLDL 521
              ++N +G ++S N A    F          P         +  S  +    E      
Sbjct: 519 PTYVVNWQGNVISHNSAFEHYFTADYYKNAMLPLENSDSPFKDVFSNAHEVTAETKENRT 578

Query: 522 RQTLEKIT-LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
             T       G  K        +       ++ Y     DI+E +   N L   K  A K
Sbjct: 579 IYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLINALEVEKNKAIK 638

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            +  KS FLA +SHEIRTP+++I+GF E++       L   + +E  +    +G  +L +
Sbjct: 639 ATVAKSQFLATMSHEIRTPISSIMGFLELLS---GSGLSKEQRVEAISLAYATGQSLLGL 695

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILA 699
           + ++LD+ KIESG   L  + V +   V          A  K I +  S    +   +  
Sbjct: 696 IGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPDHYLVKI 755

Query: 700 DLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMTNYELEKA 756
           D ++ KQ+  N+LSNA+ FT  G  +I  S  H  +   ++   + D+G G++  E ++ 
Sbjct: 756 DPQAFKQVLSNLLSNALKFTTEGAVKITTSLVHIDDNHAVIKMTIMDSGSGLSQEEQQQL 815

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            K + Q   S   +  G+GLGL + K ++    G   + S P  GT   I  P+  +  
Sbjct: 816 FKRYSQT--SAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVEISQQ 872


>gi|323162229|gb|EFZ48088.1| sensor protein evgS [Escherichia coli E128010]
          Length = 982

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 91/419 (21%), Positives = 165/419 (39%), Gaps = 12/419 (2%)

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
            W+  +                  +    +       ++ +  +E ++    ++ ++  +
Sbjct: 528 TWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISFRKALSDSLPN 587

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--NTPSVMNHYLTEILSLDL 521
              ++N +G ++S N A    F          P         +  S  +    E      
Sbjct: 588 PTYVVNWQGNVISHNSAFEHYFTADYYKNAMLPLENSDSPFKDVFSNAHEVTAETKENRT 647

Query: 522 RQTLEKIT-LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
             T       G  K        +       ++ Y     DI+E +   N L   K  A K
Sbjct: 648 IYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLINALEVEKNKAIK 707

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            +  KS FLA +SHEIRTP+++I+GF E++       L   + +E  +    +G  +L +
Sbjct: 708 ATVAKSQFLATMSHEIRTPISSIMGFLELLS---GSGLSKEQRVEAISLAYATGQSLLGL 764

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILA 699
           + ++LD+ KIESG   L  + V +   V          A  K I +  S    +   +  
Sbjct: 765 IGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPDHYLVKI 824

Query: 700 DLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMTNYELEKA 756
           D ++ KQ+  N+LSNA+ FT  G  +I  S  H  +   ++   + D+G G++  E ++ 
Sbjct: 825 DPQAFKQVLSNLLSNALKFTTEGAVKITTSLVHIDDNHAVIKMTIMDSGSGLSQEEQQQL 884

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            K + Q   S   +  G+GLGL + K ++    G   + S P  GT   I  P+  +  
Sbjct: 885 FKRYSQT--SAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVEISQQ 941


>gi|323156377|gb|EFZ42534.1| sensor protein evgS [Escherichia coli EPECa14]
          Length = 1018

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 91/419 (21%), Positives = 165/419 (39%), Gaps = 12/419 (2%)

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
            W+  +                  +    +       ++ +  +E ++    ++ ++  +
Sbjct: 528 TWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISFRKALSDSLPN 587

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--NTPSVMNHYLTEILSLDL 521
              ++N +G ++S N A    F          P         +  S  +    E      
Sbjct: 588 PTYVVNWQGNVISHNSAFEHYFTADYYKNAMLPLENSDSPFKDVFSNAHEVTAETKENRT 647

Query: 522 RQTLEKIT-LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
             T       G  K        +       ++ Y     DI+E +   N L   K  A K
Sbjct: 648 IYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLINALEVEKNKAIK 707

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            +  KS FLA +SHEIRTP+++I+GF E++       L   + +E  +    +G  +L +
Sbjct: 708 ATVAKSQFLATMSHEIRTPISSIMGFLELLS---GSGLSKEQRVEAISLAYATGQSLLGL 764

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILA 699
           + ++LD+ KIESG   L  + V +   V          A  K I +  S    +   +  
Sbjct: 765 IGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPDHYLVKI 824

Query: 700 DLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMTNYELEKA 756
           D ++ KQ+  N+LSNA+ FT  G  +I  S  H  +   ++   + D+G G++  E ++ 
Sbjct: 825 DPQAFKQVLSNLLSNALKFTTEGAVKITTSLVHIDDNHAVIKMTIMDSGSGLSQEEQQQL 884

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            K + Q   S   +  G+GLGL + K ++    G   + S P  GT   I  P+  +  
Sbjct: 885 FKRYSQT--SAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVEISQQ 941


>gi|320199944|gb|EFW74533.1| Hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Escherichia coli EC4100B]
          Length = 1127

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 91/419 (21%), Positives = 165/419 (39%), Gaps = 12/419 (2%)

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
            W+  +                  +    +       ++ +  +E ++    ++ ++  +
Sbjct: 458 TWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISFRKALSDSLPN 517

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--NTPSVMNHYLTEILSLDL 521
              ++N +G ++S N A    F          P         +  S  +    E      
Sbjct: 518 PTYVVNWQGNVISHNSAFEHYFTADYYKNAMLPLENSDSPFKDVFSNAHEVTAETKENRT 577

Query: 522 RQTLEKIT-LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
             T       G  K        +       ++ Y     DI+E +   N L   K  A K
Sbjct: 578 IYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLINALEVEKNKAIK 637

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            +  KS FLA +SHEIRTP+++I+GF E++       L   + +E  +    +G  +L +
Sbjct: 638 ATVAKSQFLATMSHEIRTPISSIMGFLELLS---GSGLSKEQRVEAISLAYATGQSLLGL 694

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILA 699
           + ++LD+ KIESG   L  + V +   V          A  K I +  S    +   +  
Sbjct: 695 IGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPDHYLVKI 754

Query: 700 DLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMTNYELEKA 756
           D ++ KQ+  N+LSNA+ FT  G  +I  S  H  +   ++   + D+G G++  E ++ 
Sbjct: 755 DPQAFKQVLSNLLSNALKFTTEGAVKITTSLVHIDDNHAVIKMTIMDSGSGLSQEEQQQL 814

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            K + Q   S   +  G+GLGL + K ++    G   + S P  GT   I  P+  +  
Sbjct: 815 FKRYSQT--SAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVEISQQ 871


>gi|331669116|ref|ZP_08369964.1| sensor protein EvgS [Escherichia coli TA271]
 gi|331064310|gb|EGI36221.1| sensor protein EvgS [Escherichia coli TA271]
          Length = 1147

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 91/419 (21%), Positives = 165/419 (39%), Gaps = 12/419 (2%)

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
            W+  +                  +    +       ++ +  +E ++    ++ ++  +
Sbjct: 478 TWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISFRKALSDSLPN 537

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--NTPSVMNHYLTEILSLDL 521
              ++N +G ++S N A    F          P         +  S  +    E      
Sbjct: 538 PTYVVNWQGNVISHNSAFEHYFTADYYKNAMLPLENSDSPFKDVFSNAHEVTAETKENRT 597

Query: 522 RQTLEKIT-LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
             T       G  K        +       ++ Y     DI+E +   N L   K  A K
Sbjct: 598 IYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLINALEVEKNKAIK 657

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            +  KS FLA +SHEIRTP+++I+GF E++       L   + +E  +    +G  +L +
Sbjct: 658 ATVAKSQFLATMSHEIRTPISSIMGFLELLS---GSGLSKEQRVEAISLAYATGQSLLGL 714

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILA 699
           + ++LD+ KIESG   L  + V +   V          A  K I +  S    +   +  
Sbjct: 715 IGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPDHYLVKI 774

Query: 700 DLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMTNYELEKA 756
           D ++ KQ+  N+LSNA+ FT  G  +I  S  H  +   ++   + D+G G++  E ++ 
Sbjct: 775 DPQAFKQVLSNLLSNALKFTTEGAVKITTSLVHIDDNHAVIKMTIMDSGSGLSQEEQQQL 834

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            K + Q   S   +  G+GLGL + K ++    G   + S P  GT   I  P+  +  
Sbjct: 835 FKRYSQT--SAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVEISQQ 891


>gi|307311026|ref|ZP_07590670.1| Hpt sensor hybrid histidine kinase [Escherichia coli W]
 gi|306908532|gb|EFN39029.1| Hpt sensor hybrid histidine kinase [Escherichia coli W]
 gi|315061705|gb|ADT76032.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Escherichia coli W]
 gi|323377714|gb|ADX49982.1| Hpt sensor hybrid histidine kinase [Escherichia coli KO11]
          Length = 1197

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 91/419 (21%), Positives = 165/419 (39%), Gaps = 12/419 (2%)

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
            W+  +                  +    +       ++ +  +E ++    ++ ++  +
Sbjct: 528 TWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISFRKALSDSLPN 587

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--NTPSVMNHYLTEILSLDL 521
              ++N +G ++S N A    F          P         +  S  +    E      
Sbjct: 588 PTYVVNWQGNVISHNSAFEHYFTADYYKNAMLPLENSDSPFKDVFSNAHEVTAETKENRT 647

Query: 522 RQTLEKIT-LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
             T       G  K        +       ++ Y     DI+E +   N L   K  A K
Sbjct: 648 IYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLINALEVEKNKAIK 707

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            +  KS FLA +SHEIRTP+++I+GF E++       L   + +E  +    +G  +L +
Sbjct: 708 ATVAKSQFLATMSHEIRTPISSIMGFLELLS---GSGLSKEQRVEAISLAYATGQSLLGL 764

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILA 699
           + ++LD+ KIESG   L  + V +   V          A  K I +  S    +   +  
Sbjct: 765 IGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPDHYLVKI 824

Query: 700 DLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMTNYELEKA 756
           D ++ KQ+  N+LSNA+ FT  G  +I  S  H  +   ++   + D+G G++  E ++ 
Sbjct: 825 DPQAFKQVLSNLLSNALKFTTEGAVKITTSLVHIDDNHAVIKMTIMDSGSGLSQEEQQQL 884

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            K + Q   S   +  G+GLGL + K ++    G   + S P  GT   I  P+  +  
Sbjct: 885 FKRYSQT--SAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVEISQQ 941


>gi|300817387|ref|ZP_07097604.1| response regulator receiver domain protein [Escherichia coli MS
           107-1]
 gi|300530013|gb|EFK51075.1| response regulator receiver domain protein [Escherichia coli MS
           107-1]
          Length = 1197

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 91/419 (21%), Positives = 165/419 (39%), Gaps = 12/419 (2%)

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
            W+  +                  +    +       ++ +  +E ++    ++ ++  +
Sbjct: 528 TWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISFRKALSDSLPN 587

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--NTPSVMNHYLTEILSLDL 521
              ++N +G ++S N A    F          P         +  S  +    E      
Sbjct: 588 PTYVVNWQGNVISHNSAFEHYFTADYYKNAMLPLENSDSPFKDVFSNAHEVTAETKENRT 647

Query: 522 RQTLEKIT-LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
             T       G  K        +       ++ Y     DI+E +   N L   K  A K
Sbjct: 648 IYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLINALEVEKNKAIK 707

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            +  KS FLA +SHEIRTP+++I+GF E++       L   + +E  +    +G  +L +
Sbjct: 708 ATVAKSQFLATMSHEIRTPISSIMGFLELLS---GSGLSKEQRVEAISLAYATGQSLLGL 764

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILA 699
           + ++LD+ KIESG   L  + V +   V          A  K I +  S    +   +  
Sbjct: 765 IGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPDHYLVKI 824

Query: 700 DLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMTNYELEKA 756
           D ++ KQ+  N+LSNA+ FT  G  +I  S  H  +   ++   + D+G G++  E ++ 
Sbjct: 825 DPQAFKQVLSNLLSNALKFTTEGAVKITTSLVHIDDNHAVIKMTIMDSGSGLSQEEQQQL 884

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            K + Q   S   +  G+GLGL + K ++    G   + S P  GT   I  P+  +  
Sbjct: 885 FKRYSQT--SAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVEISQQ 941


>gi|300820961|ref|ZP_07101111.1| response regulator receiver domain protein [Escherichia coli MS
           119-7]
 gi|331678363|ref|ZP_08379038.1| sensor protein EvgS [Escherichia coli H591]
 gi|300526714|gb|EFK47783.1| response regulator receiver domain protein [Escherichia coli MS
           119-7]
 gi|331074823|gb|EGI46143.1| sensor protein EvgS [Escherichia coli H591]
          Length = 1197

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 91/419 (21%), Positives = 165/419 (39%), Gaps = 12/419 (2%)

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
            W+  +                  +    +       ++ +  +E ++    ++ ++  +
Sbjct: 528 TWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISFRKALSDSLPN 587

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--NTPSVMNHYLTEILSLDL 521
              ++N +G ++S N A    F          P         +  S  +    E      
Sbjct: 588 PTYVVNWQGNVISHNSAFEHYFTADYYKNAMLPLENSDSPFKDVFSNAHEVTAETKENRT 647

Query: 522 RQTLEKIT-LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
             T       G  K        +       ++ Y     DI+E +   N L   K  A K
Sbjct: 648 IYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLINALEVEKNKAIK 707

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            +  KS FLA +SHEIRTP+++I+GF E++       L   + +E  +    +G  +L +
Sbjct: 708 ATVAKSQFLATMSHEIRTPISSIMGFLELLS---GSGLSKEQRVEAISLAYATGQSLLGL 764

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILA 699
           + ++LD+ KIESG   L  + V +   V          A  K I +  S    +   +  
Sbjct: 765 IGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPDHYLVKI 824

Query: 700 DLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMTNYELEKA 756
           D ++ KQ+  N+LSNA+ FT  G  +I  S  H  +   ++   + D+G G++  E ++ 
Sbjct: 825 DPQAFKQVLSNLLSNALKFTTEGAVKITTSLVHIDDNHAVIKMTIMDSGSGLSQEEQQQL 884

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            K + Q   S   +  G+GLGL + K ++    G   + S P  GT   I  P+  +  
Sbjct: 885 FKRYSQT--SAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVEISQQ 941


>gi|300918469|ref|ZP_07135064.1| response regulator receiver domain protein [Escherichia coli MS
           115-1]
 gi|300414352|gb|EFJ97662.1| response regulator receiver domain protein [Escherichia coli MS
           115-1]
          Length = 1197

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 91/419 (21%), Positives = 165/419 (39%), Gaps = 12/419 (2%)

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
            W+  +                  +    +       ++ +  +E ++    ++ ++  +
Sbjct: 528 TWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISFRKALSDSLPN 587

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--NTPSVMNHYLTEILSLDL 521
              ++N +G ++S N A    F          P         +  S  +    E      
Sbjct: 588 PTYVVNWQGNVISHNSAFEHYFTADYYKNAMLPLENSDSPFKDVFSNAHEVTAETKENRT 647

Query: 522 RQTLEKIT-LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
             T       G  K        +       ++ Y     DI+E +   N L   K  A K
Sbjct: 648 IYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLINALEVEKNKAIK 707

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            +  KS FLA +SHEIRTP+++I+GF E++       L   + +E  +    +G  +L +
Sbjct: 708 ATVAKSQFLATMSHEIRTPISSIMGFLELLS---GSGLSKEQRVEAISLAYATGQSLLGL 764

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILA 699
           + ++LD+ KIESG   L  + V +   V          A  K I +  S    +   +  
Sbjct: 765 IGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPDHYLVKI 824

Query: 700 DLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMTNYELEKA 756
           D ++ KQ+  N+LSNA+ FT  G  +I  S  H  +   ++   + D+G G++  E ++ 
Sbjct: 825 DPQAFKQVLSNLLSNALKFTTEGAVKITTSLVHIDDNHAVIKMTIMDSGSGLSQEEQQQL 884

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            K + Q   S   +  G+GLGL + K ++    G   + S P  GT   I  P+  +  
Sbjct: 885 FKRYSQT--SAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVEISQQ 941


>gi|300903097|ref|ZP_07121034.1| response regulator receiver domain protein [Escherichia coli MS
           84-1]
 gi|301304743|ref|ZP_07210850.1| response regulator receiver domain protein [Escherichia coli MS
           124-1]
 gi|300404874|gb|EFJ88412.1| response regulator receiver domain protein [Escherichia coli MS
           84-1]
 gi|300839974|gb|EFK67734.1| response regulator receiver domain protein [Escherichia coli MS
           124-1]
 gi|315256388|gb|EFU36356.1| response regulator receiver domain protein [Escherichia coli MS
           85-1]
          Length = 1197

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 91/419 (21%), Positives = 165/419 (39%), Gaps = 12/419 (2%)

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
            W+  +                  +    +       ++ +  +E ++    ++ ++  +
Sbjct: 528 TWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISFRKALSDSLPN 587

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--NTPSVMNHYLTEILSLDL 521
              ++N +G ++S N A    F          P         +  S  +    E      
Sbjct: 588 PTYVVNWQGNVISHNSAFEHYFTADYYKNAMLPLENSDSPFKDVFSNAHEVTAETKENRT 647

Query: 522 RQTLEKIT-LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
             T       G  K        +       ++ Y     DI+E +   N L   K  A K
Sbjct: 648 IYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLINALEVEKNKAIK 707

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            +  KS FLA +SHEIRTP+++I+GF E++       L   + +E  +    +G  +L +
Sbjct: 708 ATVAKSQFLATMSHEIRTPISSIMGFLELLS---GSGLSKEQRVEAISLAYATGQSLLGL 764

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILA 699
           + ++LD+ KIESG   L  + V +   V          A  K I +  S    +   +  
Sbjct: 765 IGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPDHYLVKI 824

Query: 700 DLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMTNYELEKA 756
           D ++ KQ+  N+LSNA+ FT  G  +I  S  H  +   ++   + D+G G++  E ++ 
Sbjct: 825 DPQAFKQVLSNLLSNALKFTTEGAVKITTSLVHIDDNHAVIKMTIMDSGSGLSQEEQQQL 884

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            K + Q   S   +  G+GLGL + K ++    G   + S P  GT   I  P+  +  
Sbjct: 885 FKRYSQT--SAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVEISQQ 941


>gi|294495905|ref|YP_003542398.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
 gi|292666904|gb|ADE36753.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
          Length = 554

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 100/531 (18%), Positives = 191/531 (35%), Gaps = 55/531 (10%)

Query: 322 TPETVDKCPIPFFVYSHGNLFYANPSFLLLT--KYKSVDDIEIAGGLSTLLDAPKLSDNN 379
             E +DK P+  F +        N     +T   Y   D ++       L+  P+     
Sbjct: 34  FEEIIDKSPMIVFFWDGDQRTETNYVSERVTVFGYSPEDFLDGRMTYKELI-HPEDRSFV 92

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
             +      +              +    +             +  +N+  +GI  +  D
Sbjct: 93  QNEFERFRNNSSNQFTCE-----YRIVDSSGSIKWISEITFPCRCDDNLEYHGILLDVTD 147

Query: 440 TRINKRK-MEIEVM--------------------------QLCSILEATSDGIAIINREG 472
            +I++R  +E E                            ++  +L+ T+ G+ IIN E 
Sbjct: 148 RKISERAILEKERDISILYSASALASESLDVDDLLDEMLMEMGDLLDITAGGVYIINPEE 207

Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV-----MNHYLTEILSLDLRQTLEK 527
              +  RA     G   E I         + +                   +  ++ L  
Sbjct: 208 K-EAVLRAYIGPAGEYPESIHYCAIENMFDNSAGPASGPFVAEDTFHYQGQMQRKKYLLF 266

Query: 528 ITLGSTKEEKLLSLRI---------IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578
                 K    + L I          ++ L     +        E  Q       A +  
Sbjct: 267 RLYSREKVMGFIQLSIPLNHEVSEKSLQVLEHVGKHIGIAI---ENAQLFEMTQRAYEDL 323

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
           +     KS+FLA ++HE++TPL +I GFS+++   R G L   +       + R+ + + 
Sbjct: 324 KHLDKLKSEFLANLTHELKTPLISIKGFSDLLDKGRLGELNEDQKKANLAVV-RNADRLK 382

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
            +++ LL +S  + GK    FE + + E +++A+  ++++   K + I     N      
Sbjct: 383 RLIDSLLYMSMEKEGKYQYQFEELDVGEIITDAMDKMKVHTEGKDVDIGIDIQNKSYLTC 442

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
            D   +  + LNIL NA  FT   G+I I+      E + ++++D G+G+   ++ +   
Sbjct: 443 GDRDRLTNVFLNILDNASKFTKGSGRIKITLK-EEEEYIRIKIKDNGIGIPKEKIPRIFD 501

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            F QI  S      G G+GL + K ++D + G  +  S    GT + +  P
Sbjct: 502 MFYQIDGSTTRIYNGVGMGLYICKKVIDIHNGSIWARSMEGLGTTVHVKLP 552


>gi|289164577|ref|YP_003454715.1| Legionella transmission sensor LetS [Legionella longbeachae NSW150]
 gi|288857750|emb|CBJ11594.1| Legionella transmission sensor LetS [Legionella longbeachae NSW150]
          Length = 910

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 79/241 (32%), Positives = 131/241 (54%), Gaps = 10/241 (4%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +LS  KK  E++S  KS+F+A +SHEIRTP+  +IGF+ V+   +  PL     ++Y   
Sbjct: 282 ELSLEKKKIEEKSRQKSEFIANMSHEIRTPMNGVIGFTNVLLESKLDPL----QLDYVKT 337

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I  S   +L I+ND+LD SKI++GK++L   P+++   + E ++L    A++K I +   
Sbjct: 338 IKSSAQDLLGIINDILDFSKIDAGKLHLDCIPLNIRHCIDEVLALAAPNAHKKGIDLIPI 397

Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDT 744
              N+P+ +L D   VKQ   N+++NA+ FT  G  ++I T      E    + + + DT
Sbjct: 398 TELNVPKIVLGDPFRVKQFISNLVTNAVKFTDHG-YVLIRTNVEQETEKDYTLCITITDT 456

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G++  +  K    F Q   S   R  G+GLGL + K + +   G+    S   KG++ 
Sbjct: 457 GLGISPEDQSKLFTAFNQADTSITRRYGGSGLGLVICKKLCEEMKGRITFASELNKGSVF 516

Query: 805 E 805
            
Sbjct: 517 T 517


>gi|270157008|ref|ZP_06185665.1| legionella transmission sensor LetS [Legionella longbeachae D-4968]
 gi|269989033|gb|EEZ95287.1| legionella transmission sensor LetS [Legionella longbeachae D-4968]
          Length = 868

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 79/241 (32%), Positives = 131/241 (54%), Gaps = 10/241 (4%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +LS  KK  E++S  KS+F+A +SHEIRTP+  +IGF+ V+   +  PL     ++Y   
Sbjct: 282 ELSLEKKKIEEKSRQKSEFIANMSHEIRTPMNGVIGFTNVLLESKLDPL----QLDYVKT 337

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I  S   +L I+ND+LD SKI++GK++L   P+++   + E ++L    A++K I +   
Sbjct: 338 IKSSAQDLLGIINDILDFSKIDAGKLHLDCIPLNIRHCIDEVLALAAPNAHKKGIDLIPI 397

Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDT 744
              N+P+ +L D   VKQ   N+++NA+ FT  G  ++I T      E    + + + DT
Sbjct: 398 TELNVPKIVLGDPFRVKQFISNLVTNAVKFTDHG-YVLIRTNVEQETEKDYTLCITITDT 456

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G++  +  K    F Q   S   R  G+GLGL + K + +   G+    S   KG++ 
Sbjct: 457 GLGISPEDQSKLFTAFNQADTSITRRYGGSGLGLVICKKLCEEMKGRITFASELNKGSVF 516

Query: 805 E 805
            
Sbjct: 517 T 517


>gi|260845017|ref|YP_003222795.1| hybrid sensory histidine kinase EvgS in two-component regulatory
           system with EvgA [Escherichia coli O103:H2 str. 12009]
 gi|257760164|dbj|BAI31661.1| hybrid sensory histidine kinase EvgS in two-component regulatory
           system with EvgA [Escherichia coli O103:H2 str. 12009]
          Length = 1197

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 91/419 (21%), Positives = 165/419 (39%), Gaps = 12/419 (2%)

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
            W+  +                  +    +       ++ +  +E ++    ++ ++  +
Sbjct: 528 TWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISFRKALSDSLPN 587

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--NTPSVMNHYLTEILSLDL 521
              ++N +G ++S N A    F          P         +  S  +    E      
Sbjct: 588 PTYVVNWQGNVISHNSAFEHYFTADYYKNAMLPLENSDSPFKDVFSNAHEVTAETKENRT 647

Query: 522 RQTLEKIT-LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
             T       G  K        +       ++ Y     DI+E +   N L   K  A K
Sbjct: 648 IYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLINALEVEKNKAIK 707

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            +  KS FLA +SHEIRTP+++I+GF E++       L   + +E  +    +G  +L +
Sbjct: 708 ATVAKSQFLATMSHEIRTPISSIMGFLELLS---GSGLSKEQRVEAISLAYATGQSLLGL 764

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILA 699
           + ++LD+ KIESG   L  + V +   V          A  K I +  S    +   +  
Sbjct: 765 IGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPDHYLVKI 824

Query: 700 DLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMTNYELEKA 756
           D ++ KQ+  N+LSNA+ FT  G  +I  S  H  +   ++   + D+G G++  E ++ 
Sbjct: 825 DPQAFKQVLSNLLSNALKFTTEGAVKITTSLVHIDDNHAVIKMTIMDSGSGLSQEEQQQL 884

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            K + Q   S   +  G+GLGL + K ++    G   + S P  GT   I  P+  +  
Sbjct: 885 FKRYSQT--SAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVEISQQ 941


>gi|260856479|ref|YP_003230370.1| hybrid sensory histidine kinase EvgS in two-component regulatory
           system with EvgA [Escherichia coli O26:H11 str. 11368]
 gi|260869075|ref|YP_003235477.1| hybrid sensory histidine kinase EvgS in two-component regulatory
           system with EvgA [Escherichia coli O111:H- str. 11128]
 gi|257755128|dbj|BAI26630.1| hybrid sensory histidine kinase EvgS in two-component regulatory
           system with EvgA [Escherichia coli O26:H11 str. 11368]
 gi|257765431|dbj|BAI36926.1| hybrid sensory histidine kinase EvgS in two-component regulatory
           system with EvgA [Escherichia coli O111:H- str. 11128]
          Length = 1197

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 91/419 (21%), Positives = 165/419 (39%), Gaps = 12/419 (2%)

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
            W+  +                  +    +       ++ +  +E ++    ++ ++  +
Sbjct: 528 TWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISFRKALSDSLPN 587

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--NTPSVMNHYLTEILSLDL 521
              ++N +G ++S N A    F          P         +  S  +    E      
Sbjct: 588 PTYVVNWQGNVISHNSAFEHYFTADYYKNAMLPLENSDSPFKDVFSNAHEVTAETKENRT 647

Query: 522 RQTLEKIT-LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
             T       G  K        +       ++ Y     DI+E +   N L   K  A K
Sbjct: 648 IYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLINALEVEKNKAIK 707

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            +  KS FLA +SHEIRTP+++I+GF E++       L   + +E  +    +G  +L +
Sbjct: 708 ATVAKSQFLATMSHEIRTPISSIMGFLELLS---GSGLSKEQRVEAISLAYATGQSLLGL 764

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILA 699
           + ++LD+ KIESG   L  + V +   V          A  K I +  S    +   +  
Sbjct: 765 IGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPDHYLVKI 824

Query: 700 DLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMTNYELEKA 756
           D ++ KQ+  N+LSNA+ FT  G  +I  S  H  +   ++   + D+G G++  E ++ 
Sbjct: 825 DPQAFKQVLSNLLSNALKFTTEGAVKITTSLVHIDDNHAVIKMTIMDSGSGLSQEEQQQL 884

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            K + Q   S   +  G+GLGL + K ++    G   + S P  GT   I  P+  +  
Sbjct: 885 FKRYSQT--SAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVEISQQ 941


>gi|256017469|ref|ZP_05431334.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Shigella sp. D9]
 gi|332278474|ref|ZP_08390887.1| sensor histidine kinase/response regulator EvgS [Shigella sp. D9]
 gi|332100826|gb|EGJ04172.1| sensor histidine kinase/response regulator EvgS [Shigella sp. D9]
          Length = 1197

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 91/419 (21%), Positives = 165/419 (39%), Gaps = 12/419 (2%)

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
            W+  +                  +    +       ++ +  +E ++    ++ ++  +
Sbjct: 528 TWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISFRKALSDSLPN 587

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--NTPSVMNHYLTEILSLDL 521
              ++N +G ++S N A    F          P         +  S  +    E      
Sbjct: 588 PTYVVNWQGNVISHNSAFEHYFTADYYKNAMLPLENSDSPFKDVFSNAHEVTAETKENRT 647

Query: 522 RQTLEKIT-LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
             T       G  K        +       ++ Y     DI+E +   N L   K  A K
Sbjct: 648 IYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLINALEVEKNKAIK 707

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            +  KS FLA +SHEIRTP+++I+GF E++       L   + +E  +    +G  +L +
Sbjct: 708 ATVAKSQFLATMSHEIRTPISSIMGFLELLS---GSGLSKEQRVEAISLAYATGQSLLGL 764

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILA 699
           + ++LD+ KIESG   L  + V +   V          A  K I +  S    +   +  
Sbjct: 765 IGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPDHYLVKI 824

Query: 700 DLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMTNYELEKA 756
           D ++ KQ+  N+LSNA+ FT  G  +I  S  H  +   ++   + D+G G++  E ++ 
Sbjct: 825 DPQAFKQVLSNLLSNALKFTTEGAVKITTSLVHIDDNHAVIKMTIMDSGSGLSQEEQQQL 884

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            K + Q   S   +  G+GLGL + K ++    G   + S P  GT   I  P+  +  
Sbjct: 885 FKRYSQT--SAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVEISQQ 941


>gi|239995050|ref|ZP_04715574.1| GGDEF domain protein [Alteromonas macleodii ATCC 27126]
          Length = 637

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 72/250 (28%), Positives = 119/250 (47%), Gaps = 11/250 (4%)

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            K + N L  A + AE+ +  KS+FLA +SHEIRTP+  +IG   ++K        + R 
Sbjct: 74  LKAQANDLKKALEQAEEATKLKSEFLANMSHEIRTPMNGVIGMLGLLKKSNLTTEQSQR- 132

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
               N    S N +L ++ND+LD SKIE+ K+ +      + E +      V   A EK 
Sbjct: 133 ---VNIASSSANSLLALINDILDFSKIEADKLEIESVEFDVRELIESIAQSVAHLAQEKG 189

Query: 684 ILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-----V 737
           + +    +  +  +I +D   ++QI  N+LSNA+ FT  G ++ ++             +
Sbjct: 190 LDVVVDLSKVSESKINSDPSRIQQILTNLLSNAVKFTEQG-ELSVTAELLPTNNQNTALM 248

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
            + V DTG+G+   +L      F Q+  S   R  GTGLGL + K +     G   + + 
Sbjct: 249 HIAVADTGIGIPASKLPHLFDAFTQVDASTTRRYGGTGLGLSITKKLCQLLGGDISVTTE 308

Query: 798 PAKGTLIEII 807
             KG+  ++ 
Sbjct: 309 LGKGSRFDVT 318


>gi|218696012|ref|YP_002403679.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Escherichia coli 55989]
 gi|293446742|ref|ZP_06663164.1| two-component system [Escherichia coli B088]
 gi|300948489|ref|ZP_07162586.1| response regulator receiver domain protein [Escherichia coli MS
           116-1]
 gi|300956365|ref|ZP_07168659.1| response regulator receiver domain protein [Escherichia coli MS
           175-1]
 gi|218352744|emb|CAU98530.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Escherichia coli 55989]
 gi|291323572|gb|EFE63000.1| two-component system [Escherichia coli B088]
 gi|300316816|gb|EFJ66600.1| response regulator receiver domain protein [Escherichia coli MS
           175-1]
 gi|300451998|gb|EFK15618.1| response regulator receiver domain protein [Escherichia coli MS
           116-1]
          Length = 1197

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 91/419 (21%), Positives = 165/419 (39%), Gaps = 12/419 (2%)

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
            W+  +                  +    +       ++ +  +E ++    ++ ++  +
Sbjct: 528 TWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISFRKALSDSLPN 587

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--NTPSVMNHYLTEILSLDL 521
              ++N +G ++S N A    F          P         +  S  +    E      
Sbjct: 588 PTYVVNWQGNVISHNSAFEHYFTADYYKNAMLPLENSDSPFKDVFSNAHEVTAETKENRT 647

Query: 522 RQTLEKIT-LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
             T       G  K        +       ++ Y     DI+E +   N L   K  A K
Sbjct: 648 IYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLINALEVEKNKAIK 707

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            +  KS FLA +SHEIRTP+++I+GF E++       L   + +E  +    +G  +L +
Sbjct: 708 ATVAKSQFLATMSHEIRTPISSIMGFLELLS---GSGLSKEQRVEAISLAYATGQSLLGL 764

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILA 699
           + ++LD+ KIESG   L  + V +   V          A  K I +  S    +   +  
Sbjct: 765 IGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPDHYLVKI 824

Query: 700 DLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMTNYELEKA 756
           D ++ KQ+  N+LSNA+ FT  G  +I  S  H  +   ++   + D+G G++  E ++ 
Sbjct: 825 DPQAFKQVLSNLLSNALKFTTEGAVKITTSLVHIDDNHAVIKMTIMDSGSGLSQEEQQQL 884

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            K + Q   S   +  G+GLGL + K ++    G   + S P  GT   I  P+  +  
Sbjct: 885 FKRYSQT--SAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVEISQQ 941


>gi|218676127|ref|YP_002394946.1| putative sensor protein [Vibrio splendidus LGP32]
 gi|218324395|emb|CAV25783.1| putative sensor protein [Vibrio splendidus LGP32]
          Length = 537

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 80/245 (32%), Positives = 121/245 (49%), Gaps = 10/245 (4%)

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
            +L  AK+ A   +  KS FLA +SHEIRTPL  IIG +E++   +          E   
Sbjct: 29  KELIIAKEDAISANKAKSAFLANMSHEIRTPLNGIIGMAEILSQSQLSAN----QQEVLE 84

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I+ S + +L ++ND+LD+SKIESG + L      L EAV +++S++   A  K I +  
Sbjct: 85  DIESSSHSLLVLLNDILDLSKIESGNLMLSPHNADLREAVYDSVSVILSKAISKDIELDI 144

Query: 689 SFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS----NEEVILRVRD 743
           +     P ++  D   V+Q+  N+LSNAI FT  G  I     +T       ++   V D
Sbjct: 145 NIDAQTPTQLFFDEYRVRQVLTNLLSNAIKFTSKG-TITTDIAYTPMSLGRGKLECSVSD 203

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           +G+G+   +LE   +PF Q   S   +  GTGLGL + + +VD   G     S    G+ 
Sbjct: 204 SGIGIEPEKLESIFEPFTQEDGSITRQFGGTGLGLAICRQLVDLMGGYITARSVKGGGST 263

Query: 804 IEIIF 808
                
Sbjct: 264 FTFCL 268


>gi|209919858|ref|YP_002293942.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Escherichia coli SE11]
 gi|300922025|ref|ZP_07138169.1| response regulator receiver domain protein [Escherichia coli MS
           182-1]
 gi|301328872|ref|ZP_07221910.1| response regulator receiver domain protein [Escherichia coli MS
           78-1]
 gi|209913117|dbj|BAG78191.1| two-component sensor kinase [Escherichia coli SE11]
 gi|300421596|gb|EFK04907.1| response regulator receiver domain protein [Escherichia coli MS
           182-1]
 gi|300844746|gb|EFK72506.1| response regulator receiver domain protein [Escherichia coli MS
           78-1]
 gi|324016833|gb|EGB86052.1| response regulator receiver domain protein [Escherichia coli MS
           117-3]
          Length = 1197

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 91/419 (21%), Positives = 165/419 (39%), Gaps = 12/419 (2%)

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
            W+  +                  +    +       ++ +  +E ++    ++ ++  +
Sbjct: 528 TWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISFRKALSDSLPN 587

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--NTPSVMNHYLTEILSLDL 521
              ++N +G ++S N A    F          P         +  S  +    E      
Sbjct: 588 PTYVVNWQGNVISHNSAFEHYFTADYYKNAMLPLENSDSPFKDVFSNAHEVTAETKENRT 647

Query: 522 RQTLEKIT-LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
             T       G  K        +       ++ Y     DI+E +   N L   K  A K
Sbjct: 648 IYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLINALEVEKNKAIK 707

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            +  KS FLA +SHEIRTP+++I+GF E++       L   + +E  +    +G  +L +
Sbjct: 708 ATVAKSQFLATMSHEIRTPISSIMGFLELLS---GSGLSKEQRVEAISLAYATGQSLLGL 764

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILA 699
           + ++LD+ KIESG   L  + V +   V          A  K I +  S    +   +  
Sbjct: 765 IGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPDHYLVKI 824

Query: 700 DLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMTNYELEKA 756
           D ++ KQ+  N+LSNA+ FT  G  +I  S  H  +   ++   + D+G G++  E ++ 
Sbjct: 825 DPQAFKQVLSNLLSNALKFTTEGAVKITTSLVHIDDNHAVIKMTIMDSGSGLSQEEQQQL 884

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            K + Q   S   +  G+GLGL + K ++    G   + S P  GT   I  P+  +  
Sbjct: 885 FKRYSQT--SAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVEISQQ 941


>gi|193062425|ref|ZP_03043520.1| sensor histidine kinase/response regulator EvgS [Escherichia coli
           E22]
 gi|194428587|ref|ZP_03061125.1| sensor histidine kinase/response regulator EvgS [Escherichia coli
           B171]
 gi|192932091|gb|EDV84690.1| sensor histidine kinase/response regulator EvgS [Escherichia coli
           E22]
 gi|194413310|gb|EDX29594.1| sensor histidine kinase/response regulator EvgS [Escherichia coli
           B171]
          Length = 1127

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 91/419 (21%), Positives = 165/419 (39%), Gaps = 12/419 (2%)

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
            W+  +                  +    +       ++ +  +E ++    ++ ++  +
Sbjct: 458 TWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISFRKALSDSLPN 517

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--NTPSVMNHYLTEILSLDL 521
              ++N +G ++S N A    F          P         +  S  +    E      
Sbjct: 518 PTYVVNWQGNVISHNSAFEHYFTADYYKNAMLPLENSDSPFKDVFSNAHEVTAETKENRT 577

Query: 522 RQTLEKIT-LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
             T       G  K        +       ++ Y     DI+E +   N L   K  A K
Sbjct: 578 IYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLINALEVEKNKAIK 637

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            +  KS FLA +SHEIRTP+++I+GF E++       L   + +E  +    +G  +L +
Sbjct: 638 ATVAKSQFLATMSHEIRTPISSIMGFLELLS---GSGLSKEQRVEAISLAYATGQSLLGL 694

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILA 699
           + ++LD+ KIESG   L  + V +   V          A  K I +  S    +   +  
Sbjct: 695 IGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPDHYLVKI 754

Query: 700 DLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMTNYELEKA 756
           D ++ KQ+  N+LSNA+ FT  G  +I  S  H  +   ++   + D+G G++  E ++ 
Sbjct: 755 DPQAFKQVLSNLLSNALKFTTEGAVKITTSLVHIDDNHAVIKMTIMDSGSGLSQEEQQQL 814

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            K + Q   S   +  G+GLGL + K ++    G   + S P  GT   I  P+  +  
Sbjct: 815 FKRYSQT--SAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVEISQQ 871


>gi|191165496|ref|ZP_03027337.1| sensor histidine kinase/response regulator EvgS [Escherichia coli
           B7A]
 gi|190904419|gb|EDV64127.1| sensor histidine kinase/response regulator EvgS [Escherichia coli
           B7A]
          Length = 1197

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 91/419 (21%), Positives = 165/419 (39%), Gaps = 12/419 (2%)

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
            W+  +                  +    +       ++ +  +E ++    ++ ++  +
Sbjct: 528 TWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISFRKALSDSLPN 587

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--NTPSVMNHYLTEILSLDL 521
              ++N +G ++S N A    F          P         +  S  +    E      
Sbjct: 588 PTYVVNWQGNVISHNSAFEHYFTADYYKNAMLPLENSDSPFKDVFSNAHEVTAETKENRT 647

Query: 522 RQTLEKIT-LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
             T       G  K        +       ++ Y     DI+E +   N L   K  A K
Sbjct: 648 IYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLINALEVEKNKAIK 707

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            +  KS FLA +SHEIRTP+++I+GF E++       L   + +E  +    +G  +L +
Sbjct: 708 ATVAKSQFLATMSHEIRTPISSIMGFLELLS---GSGLSKEQRVEAISLAYATGQSLLGL 764

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILA 699
           + ++LD+ KIESG   L  + V +   V          A  K I +  S    +   +  
Sbjct: 765 IGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPDHYLVKI 824

Query: 700 DLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMTNYELEKA 756
           D ++ KQ+  N+LSNA+ FT  G  +I  S  H  +   ++   + D+G G++  E ++ 
Sbjct: 825 DPQAFKQVLSNLLSNALKFTTEGAVKITTSLVHIDDNHAVIKMTIMDSGSGLSQEEQQQL 884

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            K + Q   S   +  G+GLGL + K ++    G   + S P  GT   I  P+  +  
Sbjct: 885 FKRYSQT--SAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVEISQQ 941


>gi|188494301|ref|ZP_03001571.1| sensor histidine kinase/response regulator EvgS [Escherichia coli
           53638]
 gi|188489500|gb|EDU64603.1| sensor histidine kinase/response regulator EvgS [Escherichia coli
           53638]
          Length = 1197

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 91/419 (21%), Positives = 165/419 (39%), Gaps = 12/419 (2%)

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
            W+  +                  +    +       ++ +  +E ++    ++ ++  +
Sbjct: 528 TWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISFRKALSDSLPN 587

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--NTPSVMNHYLTEILSLDL 521
              ++N +G ++S N A    F          P         +  S  +    E      
Sbjct: 588 PTYVVNWQGNVISHNSAFEHYFTADYYKNAMLPLENSDSPFKDVFSNAHEVTAETKENRT 647

Query: 522 RQTLEKIT-LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
             T       G  K        +       ++ Y     DI+E +   N L   K  A K
Sbjct: 648 IYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLINALEVEKNKAIK 707

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            +  KS FLA +SHEIRTP+++I+GF E++       L   + +E  +    +G  +L +
Sbjct: 708 ATVAKSQFLATMSHEIRTPISSIMGFLELLS---GSGLSKEQRVEAISLAYATGQSLLGL 764

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILA 699
           + ++LD+ KIESG   L  + V +   V          A  K I +  S    +   +  
Sbjct: 765 IGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPDHYLVKI 824

Query: 700 DLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMTNYELEKA 756
           D ++ KQ+  N+LSNA+ FT  G  +I  S  H  +   ++   + D+G G++  E ++ 
Sbjct: 825 DPQAFKQVLSNLLSNALKFTTEGAVKITTSLVHIDDNHAVIKMTIMDSGSGLSQEEQQQL 884

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            K + Q   S   +  G+GLGL + K ++    G   + S P  GT   I  P+  +  
Sbjct: 885 FKRYSQT--SAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVEISQQ 941


>gi|157157004|ref|YP_001463705.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Escherichia coli E24377A]
 gi|218554912|ref|YP_002387825.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Escherichia coli IAI1]
 gi|309796819|ref|ZP_07691222.1| response regulator receiver domain protein [Escherichia coli MS
           145-7]
 gi|157079034|gb|ABV18742.1| sensor histidine kinase/response regulator EvgS [Escherichia coli
           E24377A]
 gi|218361680|emb|CAQ99277.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Escherichia coli IAI1]
 gi|308119578|gb|EFO56840.1| response regulator receiver domain protein [Escherichia coli MS
           145-7]
          Length = 1197

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 91/419 (21%), Positives = 165/419 (39%), Gaps = 12/419 (2%)

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
            W+  +                  +    +       ++ +  +E ++    ++ ++  +
Sbjct: 528 TWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISFRKALSDSLPN 587

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--NTPSVMNHYLTEILSLDL 521
              ++N +G ++S N A    F          P         +  S  +    E      
Sbjct: 588 PTYVVNWQGNVISHNSAFEHYFTADYYKNAMLPLENSDSPFKDVFSNAHEVTAETKENRT 647

Query: 522 RQTLEKIT-LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
             T       G  K        +       ++ Y     DI+E +   N L   K  A K
Sbjct: 648 IYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLINALEVEKNKAIK 707

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            +  KS FLA +SHEIRTP+++I+GF E++       L   + +E  +    +G  +L +
Sbjct: 708 ATVAKSQFLATMSHEIRTPISSIMGFLELLS---GSGLSKEQRVEAISLAYATGQSLLGL 764

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILA 699
           + ++LD+ KIESG   L  + V +   V          A  K I +  S    +   +  
Sbjct: 765 IGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPDHYLVKI 824

Query: 700 DLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMTNYELEKA 756
           D ++ KQ+  N+LSNA+ FT  G  +I  S  H  +   ++   + D+G G++  E ++ 
Sbjct: 825 DPQAFKQVLSNLLSNALKFTTEGAVKITTSLVHIDDNHAVIKMTIMDSGSGLSQEEQQQL 884

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            K + Q   S   +  G+GLGL + K ++    G   + S P  GT   I  P+  +  
Sbjct: 885 FKRYSQT--SAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVEISQQ 941


>gi|260433701|ref|ZP_05787672.1| histidine kinase [Silicibacter lacuscaerulensis ITI-1157]
 gi|260417529|gb|EEX10788.1| histidine kinase [Silicibacter lacuscaerulensis ITI-1157]
          Length = 360

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 77/377 (20%), Positives = 162/377 (42%), Gaps = 31/377 (8%)

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
           +  M L  ++ A      +++ +  I+ +N     L G     +  + F   L       
Sbjct: 5   MSQMMLSELIAALPLPAVVVDEQERIIGSNADARVLLGRS---LDNRHFATILR---QPQ 58

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568
           +   + + L+     T  +       ++    +         +    +T  D++  +Q  
Sbjct: 59  VIEAVEQCLATKRATT-ARHLGNDGAQDTTFEVSCRYVAAVAAV--LVTFQDVTHLEQ-- 113

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
                           + DF+A VSHE+RTPLTA++GF E ++    G      +  +  
Sbjct: 114 ------------ARQMRRDFVANVSHELRTPLTALMGFIETLRGPAKG--DPEAHDRFLR 159

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            +    N +  +V DLL ++++ES +     E V L E ++  +S ++  A+   +++  
Sbjct: 160 IMADEANRMNRLVGDLLSLNRVESEERIRPRERVELTELLNATLSSLRPLADGAGVVLSL 219

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE------VILRVR 742
           +  ++   ++ D   ++Q+  N++ NAI +  SGG++ +  T +  +       V ++V 
Sbjct: 220 TVPSSPVELVGDNDQLRQVFTNLVENAIKYGGSGGKVDLIVTESERDAAIRGPAVRVQVI 279

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G+G+    L +  + F +  + +     GTGLGL + K +V+ + G+  + S P KG 
Sbjct: 280 DKGLGIDPVHLPRLTERFYRADSHRSRELGGTGLGLAIVKHIVNRHRGRLRVESEPGKGA 339

Query: 803 LIEIIFPLYDTSHPHDC 819
           +  ++ P   T+H    
Sbjct: 340 VFTVVLPARATNHSESA 356


>gi|17228134|ref|NP_484682.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17129984|dbj|BAB72596.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 820

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 77/258 (29%), Positives = 140/258 (54%), Gaps = 12/258 (4%)

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           ++ KQ K     AK+ A+  ++ KS+FLA +SHE+RTPL  I+G+++++   +  P    
Sbjct: 341 TQLKQSKALADAAKESADSANNAKSEFLANMSHELRTPLNGILGYAQILGRSKVLP---D 397

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
           +  +  N I + G+ +L ++ND+LD+SKIE+ K+ L  +   L   +   + +  +   +
Sbjct: 398 KERQGVNIIHQCGSHLLTLINDILDLSKIEARKLELASQAFHLPSFMQGVVEICHIRVQQ 457

Query: 682 KRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-III-STTHTSNE--- 735
           K I        ++P  I AD + ++Q+ +N+L NAI FT  G   + +  T    ++   
Sbjct: 458 KGIEFHYEPDADLPAGISADEKRLRQVLINLLGNAIKFTDRGSVALRVQRTGLEESDPRT 517

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
           ++   + DTGVG+ + ++ K  + F Q+   Q+ + EGTGLGL +++ +V    G+  + 
Sbjct: 518 KLRFSIVDTGVGIASADINKLFQTFEQV-GEQKRKVEGTGLGLAISQQLVQLMGGQIQVK 576

Query: 796 STPAKGTL--IEIIFPLY 811
           S    G+    EII PL 
Sbjct: 577 SQLGVGSEFFFEIILPLA 594


>gi|251800001|ref|YP_003014732.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           sp. JDR-2]
 gi|247547627|gb|ACT04646.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           sp. JDR-2]
          Length = 663

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 76/395 (19%), Positives = 158/395 (40%), Gaps = 20/395 (5%)

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII 474
           F            +    +     +       +    +   + +E++  G+  I + G +
Sbjct: 288 FSIISVGAIVAVVLLAIRLSVGIYELESAGAALMQSRVNYDNFVESSLLGVF-IEQNGRL 346

Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
           +  N     +FG     +L +P   FL +     +      I  L+    L      S +
Sbjct: 347 VYMNPQGESMFGCEPGQMLGQPLASFLLEAERDRLKQEFNMICRLNQSSRLALAARKSNQ 406

Query: 535 EEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
           ++  L ++            S  + D++E K  +  L  ++K++           A V+H
Sbjct: 407 KDLFLEMQAAPAFFKGKPAISGLLLDVTESKLSEQHLIRSEKLSV-----IGQLAAGVAH 461

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           EIR PLTA+ GF++++  +        +   Y + +      +  IV + + +SK    +
Sbjct: 462 EIRNPLTALKGFTQLLHRR-----TTDQNRHYFDMMLTELERINYIVGEFMLLSKPHQWQ 516

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714
                    +   + + I ++Q  A    + I    + ++P +  D   +KQ+ +N++ N
Sbjct: 517 ---QISSCDMSSLLDDIIPIMQSQAIITNVSISAEKSQDLPIVQCDANQIKQVLVNLMKN 573

Query: 715 AIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           AI   PSGG++ +         +++ + D GVG+  + +++  +PF    ++      GT
Sbjct: 574 AIEAMPSGGELHVHMKKDHKGYMVIDIIDQGVGIPQHVIDRLGEPFYTTKDT------GT 627

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GLGL +   ++ ++ G   I S P  GT   I  P
Sbjct: 628 GLGLTVCFKIIQSHGGTLSITSEPNIGTTATIRLP 662



 Score = 43.1 bits (100), Expect = 0.21,   Method: Composition-based stats.
 Identities = 21/164 (12%), Positives = 57/164 (34%), Gaps = 11/164 (6%)

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEI 362
           +      S  A   +        V+   +  F+  +G L Y NP    +   +    +  
Sbjct: 308 VGIYELESAGAALMQSRVNYDNFVESSLLGVFIEQNGRLVYMNPQGESMFGCEPGQMLGQ 367

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
              L++ L   +         ++   +  + +A +AR    +        +         
Sbjct: 368 P--LASFLLEAERDRLKQEFNMICRLNQSSRLALAARKSNQK-------DLFLEMQAAPA 418

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
            F      +G+  +  +++++++ + I   +L S++   + G+A
Sbjct: 419 FFKGKPAISGLLLDVTESKLSEQHL-IRSEKL-SVIGQLAAGVA 460


>gi|238786791|ref|ZP_04630592.1| Signal transduction histidine-protein kinase barA [Yersinia
           frederiksenii ATCC 33641]
 gi|238725159|gb|EEQ16798.1| Signal transduction histidine-protein kinase barA [Yersinia
           frederiksenii ATCC 33641]
          Length = 911

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 86/335 (25%), Positives = 146/335 (43%), Gaps = 17/335 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           LF Y +   +  P    +       ++      L   +   +             +++ +
Sbjct: 183 LFAYRLMRDVTGPIRNMVN-----AVDRIRRGQLDSRVEGHMLGELNILKNGINSMAMSL 237

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 238 AAYHEEMQQNIDQATSDLRETLEQMEIQNVELGLAKKRAQEAARIKSEFLANMSHELRTP 297

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+     Q       P   +Y   I RS N +L I+ND+LD SK+E+ K+ L  
Sbjct: 298 LNGVIGFT----RQTLKTSLTPTQTDYLQTIQRSANNLLCIINDVLDFSKLEAEKLVLEH 353

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P  L  A+ E I L+   A+EK + +      ++P  ++ D   ++QI  N+L NAI F
Sbjct: 354 IPFPLRGALDEVIILLAHTAHEKGLELTLHVNKDVPEQVIGDAMRLQQIITNLLGNAIKF 413

Query: 719 TPSGGQ---IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T  G     + +    T    +++ + DTG+G++  +  +  + F Q   S   R  GTG
Sbjct: 414 TEQGNIDILVAVQAKTTQQVTIVVEIHDTGIGISESQQSQLFQAFRQADASISRRHGGTG 473

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           LGL + + +V    G+    S   +G+       L
Sbjct: 474 LGLVITERLVKEMGGEINFHSQVDRGSTFRFHLTL 508


>gi|157692126|ref|YP_001486588.1| sensor histidine kinase [Bacillus pumilus SAFR-032]
 gi|157680884|gb|ABV62028.1| sensor histidine kinase [Bacillus pumilus SAFR-032]
          Length = 453

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 97/411 (23%), Positives = 183/411 (44%), Gaps = 26/411 (6%)

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470
           L + F        +  +   + +     D    +++      +L  I +   + +   N 
Sbjct: 54  LDLAFTVLVITGIWVISGYVDRLNLLVSDLNTREKEAHELTERLNRITDNLQEIVFETNE 113

Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530
           +G I+  N+A +++ GY +++ L   +  + +Q    V+ H L+ I        +E   L
Sbjct: 114 KGEIIFLNQAWTQMTGYDIDECLGTMYNQYFDQE-ERVVQHLLSVIKEHKDAGRVELQLL 172

Query: 531 GSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK--- 585
               ++    +   +             T+ DI++ KQ K +L  + +   +  + K   
Sbjct: 173 HKEGKKVWGDVHYKLYFDEHHQFTGGIGTVADITKQKQAKLELERSNQQL-QMQAQKLAV 231

Query: 586 -SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
                A ++HE+R PLT++ GF +++K Q       P   +Y + I      +  ++++L
Sbjct: 232 AGQIAAGIAHEVRNPLTSVNGFLQLMKTQY------PERTDYFDIIFSEIKRIDFVLSEL 285

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILADLRS 703
           L ++K +S    +HF+ V L E + + I+L++  A    I ++  F   +   ILAD   
Sbjct: 286 LVLAKPQS----VHFQEVQLHELLEQVITLLKTNAVLSNIDLKQPFKRQDAGAILADANQ 341

Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
           +KQ+ +N++ NAI   P GG I IST    N E  + ++D G GM+  +++K   PF   
Sbjct: 342 MKQLFINLIKNAIEAMPEGGSIYISTEKVLN-EWKITIQDEGKGMSEEDIQKIYDPFFST 400

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
                   EGTGLGL +   ++  + G+  + S   KGT   I  P+   S
Sbjct: 401 KK------EGTGLGLTICATILKDHHGRMDVSSELGKGTAFHIYLPVCQKS 445



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/147 (10%), Positives = 35/147 (23%), Gaps = 9/147 (6%)

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
           +      E         D      F     G + + N ++  +T Y   + +        
Sbjct: 85  TREKEAHELTERLNRITDNLQEIVFETNEKGEIIFLNQAWTQMTGYDIDECLGTMY---- 140

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
                       +   +L        A    L  +    +  +          ++  +  
Sbjct: 141 ---NQYFDQEERVVQHLLSVIKEHKDAGRVELQLLHKEGKK-VWGDVHYKLYFDEHHQFT 196

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLC 455
              G   +    +  K ++E    QL 
Sbjct: 197 GGIGTVADITKQKQAKLELERSNQQLQ 223



 Score = 50.8 bits (120), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 16/128 (12%), Positives = 41/128 (32%), Gaps = 12/128 (9%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL----KRQN 141
            +  +  G +  +++   +  G    + +G                 +  LL    + ++
Sbjct: 108 VFETNEKGEIIFLNQAWTQMTGYDIDECLGTMYNQ----YFDQEERVVQHLLSVIKEHKD 163

Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
               +  L   EG    V  D+     +  + +F+G  G G V         +   +R +
Sbjct: 164 AGRVELQLLHKEG--KKVWGDVHYKLYFDEHHQFTG--GIGTVADITKQKQAKLELERSN 219

Query: 202 KKFSHLHE 209
           ++     +
Sbjct: 220 QQLQMQAQ 227


>gi|329910769|ref|ZP_08275381.1| sensor histidine kinase [Oxalobacteraceae bacterium IMCC9480]
 gi|327546081|gb|EGF31149.1| sensor histidine kinase [Oxalobacteraceae bacterium IMCC9480]
          Length = 840

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 114/671 (16%), Positives = 231/671 (34%), Gaps = 44/671 (6%)

Query: 178 FRGFGIVHVNRVDNDPRAL-----GKRLDKKFSHLHEIKKGHSSVEKEKY------DIFS 226
           +R   +        D +A      G+R     + L +    + + +          D+  
Sbjct: 5   WRILLVDDNPDDRADAKAALLKGSGRRYQFIEAALAQEALDYCAQQPAPDCMLLDFDLPD 64

Query: 227 QQSPPPHLRMK--NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYT 284
             +     R+   +   +L           ++    LL +       +      +L +  
Sbjct: 65  ADAFELLARLPRDSHGITLVPVVILTGSSRQSLSQELLRAGAEDYVGKAWLGPESLTRGV 124

Query: 285 KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF--VYSHGNLF 342
           +      L                    A  D   N      ++  +     ++    L 
Sbjct: 125 ENAVERHLMKRELWRERARQQVIADIAQAATDGPGNAMAALFERVRVLVQADIFLSHVLD 184

Query: 343 YANPSFLLLTKYKSVDD----IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398
              P  L LT    +D     + +     T L    ++    +    +   D    A   
Sbjct: 185 IGVPPMLRLTADAGIDAATRLLYLLLDPVTSLCGSVIAHGKPVFRHHMREHDEEATAVLK 244

Query: 399 RLH-------TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV 451
            +         +Q +      ++F    +     +     G     V     +  +    
Sbjct: 245 NIGVQAYASYPLQVDGRVIGTLSFGSRTRVAFDEDECDFMGTVASQVGAAWERLDLLRSK 304

Query: 452 M-QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS-VM 509
             +L S+ + + D +   +R+   +  N A++++ G+P    + K               
Sbjct: 305 DNELRSMTDNSPDILTRFDRQLRHVFINAAITRVTGHPPAYFIGKSNREVGMPEALCVRW 364

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQE 567
              +  + +    Q +       T   +    +++ ++             HD++  +Q 
Sbjct: 365 ERAMQHVFATGEAQQVSFDFQAVTG-LRHFDCQLVAEQRGDGRILHILGVTHDVTARRQL 423

Query: 568 KNKLSHAKK-------IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
             +     +        +E+ +  K +FLA +SHE+RTPL+AI+G++ ++K     P   
Sbjct: 424 DERREELLEAERAARIESERVALIKDEFLATLSHELRTPLSAIMGWASLLKR---APPSP 480

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
             Y +  + I R+      ++ DLLD+++I SGK+ +  E V LD   + AI  +   A 
Sbjct: 481 ELYRKGIDVIARNATEQAALIGDLLDMNRILSGKLRMESELVHLDAVAAAAIDTLAPAAL 540

Query: 681 EKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
            K I +    A   P R+L D   ++Q+  N+L+N + FT SGG + ++     +  V+ 
Sbjct: 541 AKGIALELVLAPAGPVRVLGDGARLQQVLWNLLANGVKFTASGGVVTLAIDERDD-LVVA 599

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TP 798
            V D G G+    L      F Q   S      G GLGL + K +++ + G     S   
Sbjct: 600 TVTDNGNGIEAGFLPFLFDRFSQSDGSAARVHGGLGLGLSIVKNLLELHGGTVSASSGGA 659

Query: 799 AKGTLIEIIFP 809
            +G    ++ P
Sbjct: 660 GRGACFTVLLP 670



 Score = 38.9 bits (89), Expect = 3.5,   Method: Composition-based stats.
 Identities = 24/248 (9%), Positives = 53/248 (21%), Gaps = 27/248 (10%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
             D       I+  + +  G+     IG    +V     +               W    
Sbjct: 321 RFDRQLRHVFINAAITRVTGHPPAYFIGKSNREVGMPEAL------------CVRWERAM 368

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                 G    V  D  A          +G R F    +         +   L       
Sbjct: 369 QHVFATGEAQQVSFDFQA---------VTGLRHFD-CQLVAEQRGDGRILHILGVTHDVT 418

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
              +      E  + +  ++        +K++  +   +              LL   + 
Sbjct: 419 ARRQLDERREELLEAERAARIESERVALIKDEFLATLSHELRTPLSAIMGWASLL---KR 475

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
           + P  E +                L  +  +    L       + +     + +    +D
Sbjct: 476 APPSPELYRKGIDVIARNATEQAALIGDLLDMNRIL--SGKLRMESELVHLDAVAAAAID 533

Query: 328 KCPIPFFV 335
                   
Sbjct: 534 TLAPAALA 541


>gi|116694330|ref|YP_728541.1| signal transduction histidine kinase [Ralstonia eutropha H16]
 gi|113528829|emb|CAJ95176.1| signal transduction histidine kinase containing a receiver domain
           (hybrid) and a PAS sensor domain [Ralstonia eutropha
           H16]
          Length = 503

 Score =  277 bits (708), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 92/364 (25%), Positives = 166/364 (45%), Gaps = 20/364 (5%)

Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
           +     +     +G I   N+  S   G  +E      +   +  +     +       +
Sbjct: 4   DGIPHIVFTAKPDGWIDYCNQRWSTYTGLTLEQTQLGAWQTVVHPDDMQGTSKRWRSAHA 63

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHA 574
                 LE        +                      +  T  DI + K+ +      
Sbjct: 64  SGCEYELEFRLR-RASDGAYRCHLARGAPFKDRDGNIVKWFATCTDIEDQKRAQA----- 117

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
              AE  +  KSDFL+ +SHE+R+PL AI+GF++++ +    P    +     + I ++G
Sbjct: 118 --AAEGANRAKSDFLSSMSHELRSPLNAILGFAQLMASDSPPPPPAQQAS--IDQILKAG 173

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
             +L+++N++LD++KIE+G+ +L  EPVSL EA+ E  ++V+  A ++ + +R    N  
Sbjct: 174 WHLLELINEVLDLAKIEAGQASLSPEPVSLAEALRECHAMVEQQALKRGVRMRFPSFNFP 233

Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELE 754
             + AD   +KQI LN+LSNAI +    G + +S   T+ + + + VRDTG G+   +L 
Sbjct: 234 CFVRADRTRLKQILLNLLSNAIKYNRDQGTVEVSV--TAGDRIRISVRDTGAGLAREQLA 291

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           +  +PF ++   +    EGTG+GL +AK +V+   G     S    G++  +  P    S
Sbjct: 292 QLFRPFNRL-GQEAGPEEGTGIGLVVAKRLVELMGGSIGAESAVEAGSVFWVELP---AS 347

Query: 815 HPHD 818
            P +
Sbjct: 348 RPPE 351



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/268 (8%), Positives = 56/268 (20%), Gaps = 15/268 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            +     G++   ++      G    +        V     +   +            Y 
Sbjct: 10  VFTAKPDGWIDYCNQRWSTYTGLTLEQTQLGAWQTVVHPDDMQGTSKRWRSAHASGCEYE 69

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN----RVDNDPRALGKRLD 201
                       Y        P   R+      + F          R         +   
Sbjct: 70  LEFRLRRASDGAYRCHLARGAPFKDRDGNIV--KWFATCTDIEDQKRAQAAAEGANRAKS 127

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
              S +    +   +       + +  SPPP    +  +  + +   H  + L  E   L
Sbjct: 128 DFLSSMSHELRSPLNAILGFAQLMASDSPPPPPAQQASIDQILKAGWHLLE-LINEVLDL 186

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
              E        +  ++                       + S      + A     + +
Sbjct: 187 AKIEAGQASLSPEPVSLAEALRECHAMVEQQALKRGVRMRFPSFNFPCFVRADRTRLKQI 246

Query: 322 TPETV--------DKCPIPFFVYSHGNL 341
               +        D+  +   V +   +
Sbjct: 247 LLNLLSNAIKYNRDQGTVEVSVTAGDRI 274


>gi|302771433|ref|XP_002969135.1| hypothetical protein SELMODRAFT_14315 [Selaginella moellendorffii]
 gi|300163640|gb|EFJ30251.1| hypothetical protein SELMODRAFT_14315 [Selaginella moellendorffii]
          Length = 272

 Score =  277 bits (708), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 71/266 (26%), Positives = 123/266 (46%), Gaps = 25/266 (9%)

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             +   +L  +K+ AE  S  KSDFLA +SHEIRTP+  I+G S ++     G       
Sbjct: 1   LVKANEELQTSKQAAELASQAKSDFLANMSHEIRTPIHGILGMSALVL----GTSLTDEQ 56

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            E    +     L+L I+N +LD+ KIE+G+  +     +L   +   + ++Q  A    
Sbjct: 57  KENMTTVSECAELLLHIINSILDLGKIEAGRFEVELISFNLHHVLKSTVHILQPRAQAHN 116

Query: 684 ILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE------- 735
           + +     + +P  ++ D   ++Q  LN++ NA+ FTP G ++ +  +            
Sbjct: 117 LRLSYEIDSAVPEFLVGDSGKLRQCLLNLVGNALKFTPDG-EVRVEVSVHRFGMQDDSVL 175

Query: 736 ------------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
                       E++L + D+G+G++  +L+   KPF Q   S      GTGLGL + + 
Sbjct: 176 SRLNASQWSDMLEMMLEISDSGIGISKNKLKDVFKPFTQADASISRLYGGTGLGLCVVQR 235

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFP 809
            V+   G   + S   KG+   I+ P
Sbjct: 236 FVELMGGHILVESEYGKGSSFYIVLP 261


>gi|299145365|ref|ZP_07038433.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
 gi|298515856|gb|EFI39737.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
          Length = 628

 Score =  277 bits (708), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 107/523 (20%), Positives = 200/523 (38%), Gaps = 30/523 (5%)

Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSV 357
             E     +  S        E L        PI   +Y   G L   N   L +   +  
Sbjct: 117 ISEVQDGPDMASAYQALQYSERLLSNIFKYLPIGIELYDMDGVLVDLNDKELEMFHIEKK 176

Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
           +D+         +   ++ +         +          +     Q     ++ +    
Sbjct: 177 EDVLGINIFENPIFPKEMKERLKKNEDADFTFRYDFSKVGSYYQNTQKQG--TIDLVTKV 234

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA---IINREGII 474
               +   + +    I  +  +T +   K++        + +    G A   +++  G  
Sbjct: 235 TTLYDSEHQPINYLLINADKTETTVAYNKIQEFEEFFELVGDYAKVGYAHFNVLSGHG-- 292

Query: 475 LSTNRAVSKLFGYPVEDILRKPF--TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
               ++  +  G   E  L   F        +  +++  +L +     L   L K     
Sbjct: 293 -YAQKSWYRNVGEADETPLSDIFGTYQHFHPDDRALLIRFLDDARK-GLTTKLSKEMRVL 350

Query: 533 TKEEKLLSLRII--IKKLPFSSCYSLTMH---DISEWKQEKNKLSHAKKIAEKESSHKSD 587
            ++       +   +KK          +    DI+E K+ +  L  A+  AE     KS 
Sbjct: 351 REDGTYTWTHVNLLVKKYAPQDRIIEIISINYDITELKRTEEMLVKARDKAEASDRLKSA 410

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           FLA +SHEIRTPL AI+GFS ++ +             Y + I  +  L+L+++ND++D+
Sbjct: 411 FLANMSHEIRTPLNAIVGFSSLLTSTENAA----EKELYNSLIGHNNKLLLNLINDVIDL 466

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707
           SKIES  + L  + V+L E + E+++          + + T++  +   +  D   +KQI
Sbjct: 467 SKIESAYLELRPDWVNLTELLDESVAEYAHQVPS-GVELLTNYPAHDSLVELDSLRIKQI 525

Query: 708 ALNILSNAIHFTPSGGQIIISTTHT-SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
             N LSNA+  T +G    +   +   ++ V + V+DTG G+    LEK  + F ++ + 
Sbjct: 526 LSNFLSNALKNTTTG---HVEVFYEVDHQSVRIGVKDTGRGIPQNMLEKIFERFEKLDSF 582

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
                +G GLGL + K +V+   G+  + S    GT   I  P
Sbjct: 583 ----AQGAGLGLSICKLIVEKMNGRVLVDSQLGIGTTFVIELP 621


>gi|146341638|ref|YP_001206686.1| putative sensor histidine kinase membrane protein [Bradyrhizobium
           sp. ORS278]
 gi|146194444|emb|CAL78469.1| putative sensor histidine kinase, putative membrane protein
           [Bradyrhizobium sp. ORS278]
          Length = 532

 Score =  277 bits (708), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 101/249 (40%), Positives = 156/249 (62%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I E +Q K     A+  AE  +  KS FLA++SHE+RTPL AI+GFSEV+K++ FG    
Sbjct: 239 IGELEQAKAISDEARYRAEAANVAKSRFLAQMSHELRTPLNAILGFSEVMKSEIFGAHAV 298

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
           P Y EY+  I  SG  +L+++N++LD+S+IE+G+  L+ E V+L   +++   L++L A+
Sbjct: 299 PVYKEYSADIHNSGVHLLNLINEILDLSRIEAGRYELNEEAVALVHVIADCHHLLKLRAS 358

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
            + I I   F   +PR+ AD R+++Q+ LN+LSNAI FTP GG+I +    T++    L 
Sbjct: 359 SRGITIHEVFEQKMPRLWADERAIRQVVLNLLSNAIKFTPQGGEIWLKAGWTASGGQYLS 418

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V+DTG G+   E+   +  FGQ  NS +   +G GLGLP+AK +++ + G F + S    
Sbjct: 419 VKDTGSGIPENEIPIVLASFGQGSNSIKSAEQGAGLGLPIAKNLIEMHGGTFTLKSKVRI 478

Query: 801 GTLIEIIFP 809
           GT + + FP
Sbjct: 479 GTEVIVTFP 487


>gi|52080050|ref|YP_078841.1| two-component sensor histidine kinase [Bacillus licheniformis ATCC
           14580]
 gi|52785425|ref|YP_091254.1| KinC [Bacillus licheniformis ATCC 14580]
 gi|52003261|gb|AAU23203.1| two-component sensor histidine kinase [Bacillus licheniformis ATCC
           14580]
 gi|52347927|gb|AAU40561.1| KinC [Bacillus licheniformis ATCC 14580]
          Length = 445

 Score =  277 bits (708), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 81/387 (20%), Positives = 173/387 (44%), Gaps = 30/387 (7%)

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
           ++    +++  E  +   I++   + +   +R G I   N+A + L GY VE+ L   + 
Sbjct: 68  ESEKKYKELSSETNR---IMDNLQEIVFQTDRIGYITFLNQAWTTLTGYSVEESLGTMYN 124

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYS 555
            + +     + NH + ++ + +    +    L   K+       +  K    +       
Sbjct: 125 DYFDHE-ERISNHLIAQLKNKEPEGRI--EVLYHRKDGSKFWGEVHYKLYYKNGQFTGSL 181

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESS---HKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
            T+ D++E K+ + +L  + +    +S          A ++HE+R PLT++ GF +++K 
Sbjct: 182 GTLTDVTERKKAEMELFKSNQRLAMQSQKLAMAGQLAAGIAHEVRNPLTSVNGFLQLMKA 241

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
           +       P   +Y + I      +  ++ +LL ++K       + F+ + ++  + +  
Sbjct: 242 EY------PDRKDYFDIIFSEIKRIDSVLGELLVLAKP----HQVQFKKIKINSVLQQVA 291

Query: 673 SLVQLYANEKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
           +L++  A    I I  +F +     I  D   +KQ+ +N++ N I   P GG+I IS + 
Sbjct: 292 TLLETNAVLSHIKIEKAFQHGEEWEINGDENQIKQVFINLIKNGIEAMPDGGKITIS-SK 350

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
              + V + ++D G G++  +L K  +PF         + EGTGLGL +   ++ A+ G+
Sbjct: 351 AEGDCVKISIKDEGGGISQADLAKLGEPFF------STKEEGTGLGLTICLNIIGAHNGE 404

Query: 792 FYIFSTPAKGTLIEIIFPLYDTSHPHD 818
             I S   +G+   I+ P+   +   +
Sbjct: 405 MKIDSKLGEGSTFHILLPVDKGAASEE 431



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/122 (14%), Positives = 39/122 (31%), Gaps = 6/122 (4%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            +  D  GY+  +++      G    + +G    D  D      N+ I  L  ++     
Sbjct: 91  VFQTDRIGYITFLNQAWTTLTGYSVEESLGTMYNDYFDHEERISNHLIAQLKNKEPEGRI 150

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR-ALGKRLDKKF 204
           +      +G+  +  +      +Y +N +F+G    G +            L K   +  
Sbjct: 151 EVLYHRKDGSKFWGEVHYK---LYYKNGQFTG--SLGTLTDVTERKKAEMELFKSNQRLA 205

Query: 205 SH 206
             
Sbjct: 206 MQ 207



 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/156 (10%), Positives = 40/156 (25%), Gaps = 28/156 (17%)

Query: 310 SLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIE------- 361
                + E  + T   +D      F     G + + N ++  LT Y   + +        
Sbjct: 68  ESEKKYKELSSETNRIMDNLQEIVFQTDRIGYITFLNQAWTTLTGYSVEESLGTMYNDYF 127

Query: 362 --IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
                  + L+   K  +      V+ +R D +             N             
Sbjct: 128 DHEERISNHLIAQLKNKEPEGRIEVLYHRKDGSKFWGEVHYKLYYKNG------------ 175

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
                 +     G   +  + +  + ++     +L 
Sbjct: 176 ------QFTGSLGTLTDVTERKKAEMELFKSNQRLA 205


>gi|39995119|ref|NP_951070.1| sensory box histidine kinase/response regulator [Geobacter
           sulfurreducens PCA]
 gi|39981881|gb|AAR33343.1| sensory box histidine kinase/response regulator [Geobacter
           sulfurreducens PCA]
 gi|298504149|gb|ADI82872.1| response receiver sensor histidine kinase, PAS domain-containing
           [Geobacter sulfurreducens KN400]
          Length = 516

 Score =  277 bits (708), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 96/501 (19%), Positives = 203/501 (40%), Gaps = 49/501 (9%)

Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLD--APKLSDNNAIKPVMLYRSDRTCIAASARLH-- 401
            +       +++D +E       LLD   P++     ++ +     D   I  +A     
Sbjct: 29  RTMRARDGIEALDALERESFDLVLLDIRMPRMDGIEVLERIRDRWPDLVVIMMTAHGSED 88

Query: 402 -TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
             ++  ++ ++     PF   +               ++    +R ++ E  ++ +IL  
Sbjct: 89  IAVEAMKKGAVDYISKPFSSDDMKKRVERAIQFNRTRLENERLQRVLDEERRKMGAILRG 148

Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520
            +D +  ++REG I++ NRA  + FG   + +  +P  + L+             +L+  
Sbjct: 149 MADLLVAVDREGRIITINRAAEERFGIAADGVQNQPVELLLK-TDIPGERLPCRVVLATG 207

Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKK 576
                  +T        ++ +      L  +    +     + DIS  K  + +      
Sbjct: 208 DPCL--DVTYAVQAGGGMIPVLSSATPLKGAGGEMMGCVEIIRDISTLKALERE------ 259

Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
                   + DF++ +SH+++TP+TA++G  ++++  R GP+ N     Y +    S   
Sbjct: 260 --------REDFVSMLSHDLKTPITAVVGSIDLVREGRIGPV-NAEQRSYLDSAMESCAE 310

Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696
           ++D+++ LLD+ + E+G+M +      L   ++  +      A    I +  +  +    
Sbjct: 311 MVDMIDTLLDVHRFEAGRMVMAARLEDLGPLMARTLGRFDSVARRAGIALVLTLPDYPLA 370

Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-TSNEEVI----------------- 738
           +  D     ++  N+++NAI FT  GG+I +S        E++                 
Sbjct: 371 LSLDRNQFARLMGNLIANAIKFTQEGGEIEVSARLLNDPAELVGRIPRESYPDVPLPPLN 430

Query: 739 ----LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
               + VRDTGVG+    L      F Q  N +  +  GTGLGL   + ++DA+ G  + 
Sbjct: 431 PHLLITVRDTGVGIPADSLVSIFDRFVQARNRRLGKSTGTGLGLAFCRKVMDAHHGYIWA 490

Query: 795 FSTPAKGTLIEIIFPLYDTSH 815
            S   +G+   ++FPL + ++
Sbjct: 491 ESVEGEGSSFNMLFPLTNEAY 511



 Score = 45.8 bits (107), Expect = 0.027,   Method: Composition-based stats.
 Identities = 37/311 (11%), Positives = 83/311 (26%), Gaps = 25/311 (8%)

Query: 178 FRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK 237
             G+ +  V+   +    L  +L+         + G  +++  + + F        +   
Sbjct: 1   MSGYKVFIVDDEADIALILKLQLEDAGYRTMRARDGIEALDALERESFDLVLLDIRMPRM 60

Query: 238 NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297
           + +  L        D++      ++T+  S     E      ++  +K      ++   +
Sbjct: 61  DGIEVLERIRDRWPDLVVI----MMTAHGSEDIAVEAMKKGAVDYISKPFSSDDMKKRVE 116

Query: 298 ESFEYLSHRNH-PSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYK 355
            + ++   R     L    DE        +         V   G +   N +        
Sbjct: 117 RAIQFNRTRLENERLQRVLDEERRKMGAILRGMADLLVAVDREGRIITINRAAEERFGIA 176

Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
           +     +      LL    +        V+L   D         +          + +  
Sbjct: 177 AD---GVQNQPVELLLKTDIPGERLPCRVVLATGDPCL-----DVTYAVQAGGGMIPVLS 228

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA-----TSDGIAIIN- 469
                     E M    I  +    +     +E E     S+L        +  +  I+ 
Sbjct: 229 SATPLKGAGGEMMGCVEIIRDISTLK----ALEREREDFVSMLSHDLKTPITAVVGSIDL 284

Query: 470 -REGIILSTNR 479
            REG I   N 
Sbjct: 285 VREGRIGPVNA 295



 Score = 45.0 bits (105), Expect = 0.049,   Method: Composition-based stats.
 Identities = 28/235 (11%), Positives = 69/235 (29%), Gaps = 18/235 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D  G +  I+    +  G  A  +    +  +              +L   +     T 
Sbjct: 156 VDREGRIITINRAAEERFGIAADGVQNQPVELLLKTDIPGERLPCRVVLATGDPCLDVT- 214

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
            + ++     +P+  +A P+     E  G      V + R  +  +AL +  +   S L 
Sbjct: 215 -YAVQAGGGMIPVLSSATPLKGAGGEMMGC-----VEIIRDISTLKALEREREDFVSMLS 268

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
              K   +      D+            + ++  +        D        ++   ++ 
Sbjct: 269 HDLKTPITAVVGSIDLVR----------EGRIGPVNAEQRSYLDSAMESCAEMVDMIDTL 318

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
           L +   F    +    + +  G L   +   F+ ++ R   +L     +      
Sbjct: 319 L-DVHRFEAGRMVMAARLEDLGPLMARTLGRFDSVARRAGIALVLTLPDYPLALS 372


>gi|301312222|ref|ZP_07218139.1| multi-sensor hybrid histidine kinase [Bacteroides sp. 20_3]
 gi|300829644|gb|EFK60297.1| multi-sensor hybrid histidine kinase [Bacteroides sp. 20_3]
          Length = 943

 Score =  277 bits (708), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 73/261 (27%), Positives = 121/261 (46%), Gaps = 9/261 (3%)

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
           ++  +  I    +    +    K AE  +  KS+FL+R+SHEIRTP+  I+G S +    
Sbjct: 527 FTALLLAIGARMKA-TVIQGNLKRAEAANLAKSEFLSRMSHEIRTPMNGIVGMSTIAMQN 585

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
                   +  +    +  S   +L ++ND+LD+SKIESGK+ L  E  +    + +  +
Sbjct: 586 ID---NTDKIKDCLEKVIMSSKHLLALINDVLDMSKIESGKVELRHESFNFRAFLQDFEN 642

Query: 674 LVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
           L    A  K I   T  A+++  +I+ D   + Q+  N+LSNA+ FTP+ G I +  + T
Sbjct: 643 LYGEQAKSKGISYETILASDLEVQIIGDSLRLNQVLSNLLSNALKFTPAKGMIKLRVSKT 702

Query: 733 SNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
             +     +   V DTG G+     +K  + F Q       +  GTGLGL + K      
Sbjct: 703 GEDQENVYLRFEVIDTGCGIAEENYDKIFESFEQENVDVTYKYGGTGLGLSIVKRFTGLM 762

Query: 789 MGKFYIFSTPAKGTLIEIIFP 809
            G  ++ S    G+   +  P
Sbjct: 763 GGGIHVTSVQGSGSTFTVDLP 783


>gi|298377882|ref|ZP_06987832.1| multi-sensor hybrid histidine kinase [Bacteroides sp. 3_1_19]
 gi|298265328|gb|EFI06991.1| multi-sensor hybrid histidine kinase [Bacteroides sp. 3_1_19]
          Length = 942

 Score =  277 bits (708), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 73/261 (27%), Positives = 121/261 (46%), Gaps = 9/261 (3%)

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
           ++  +  I    +    +    K AE  +  KS+FL+R+SHEIRTP+  I+G S +    
Sbjct: 526 FTALLLAIGARMKA-TVIQGNLKRAEAANLAKSEFLSRMSHEIRTPMNGIVGMSTIAMQN 584

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
                   +  +    +  S   +L ++ND+LD+SKIESGK+ L  E  +    + +  +
Sbjct: 585 ID---NTDKIKDCLEKVIMSSKHLLALINDVLDMSKIESGKVELRHESFNFRAFLQDFEN 641

Query: 674 LVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
           L    A  K I   T  A+++  +I+ D   + Q+  N+LSNA+ FTP+ G I +  + T
Sbjct: 642 LYGEQAKSKGISYETILASDLEVQIIGDSLRLNQVLSNLLSNALKFTPAKGMIKLRVSKT 701

Query: 733 SNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
             +     +   V DTG G+     +K  + F Q       +  GTGLGL + K      
Sbjct: 702 GEDQENVYLRFEVIDTGCGIAEENYDKIFESFEQENVDVTYKYGGTGLGLSIVKRFTGLM 761

Query: 789 MGKFYIFSTPAKGTLIEIIFP 809
            G  ++ S    G+   +  P
Sbjct: 762 GGGIHVTSVQGSGSTFTVDLP 782


>gi|256842335|ref|ZP_05547838.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256735942|gb|EEU49273.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 943

 Score =  277 bits (708), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 73/261 (27%), Positives = 121/261 (46%), Gaps = 9/261 (3%)

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
           ++  +  I    +    +    K AE  +  KS+FL+R+SHEIRTP+  I+G S +    
Sbjct: 527 FTALLLAIGARMKA-TVIQGNLKRAEAANLAKSEFLSRMSHEIRTPMNGIVGMSTIAMQN 585

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
                   +  +    +  S   +L ++ND+LD+SKIESGK+ L  E  +    + +  +
Sbjct: 586 ID---NTDKIKDCLEKVIMSSKHLLALINDVLDMSKIESGKVELRHESFNFRAFLQDFEN 642

Query: 674 LVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
           L    A  K I   T  A+++  +I+ D   + Q+  N+LSNA+ FTP+ G I +  + T
Sbjct: 643 LYGEQAKSKGISYETILASDLEVQIIGDSLRLNQVLSNLLSNALKFTPAKGMIKLRVSKT 702

Query: 733 SNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
             +     +   V DTG G+     +K  + F Q       +  GTGLGL + K      
Sbjct: 703 GEDQENVYLRFEVIDTGCGIAEENYDKIFESFEQENVDVTYKYGGTGLGLSIVKRFTGLM 762

Query: 789 MGKFYIFSTPAKGTLIEIIFP 809
            G  ++ S    G+   +  P
Sbjct: 763 GGGIHVTSVQGSGSTFTVDLP 783


>gi|163745599|ref|ZP_02152959.1| sensory box histidine kinase/response regulator [Oceanibulbus
           indolifex HEL-45]
 gi|161382417|gb|EDQ06826.1| sensory box histidine kinase/response regulator [Oceanibulbus
           indolifex HEL-45]
          Length = 865

 Score =  277 bits (708), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 94/555 (16%), Positives = 200/555 (36%), Gaps = 61/555 (10%)

Query: 276 HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV 335
             +   Q    +     +      +  +        +A            +D+    F  
Sbjct: 67  RALTQAQSATPEALVEFRKRFDIFYSRVLLAERVRNNAKAKPQIRELRALLDR----FLP 122

Query: 336 YSHGNLFYANPSFLLL-TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394
              G       +   + T  ++V+D+     L+++  A ++S N   + V L        
Sbjct: 123 VIDGTDAQLAAALDDIDTMLRTVEDLPREIALASIAIASEMSQNERHEIVRLI------- 175

Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
                        E   A+  I           + +           + +  +     +L
Sbjct: 176 -------------EVMAAIVLIVTLALVGAVYRLSRQASRLNRTSQMVEENHL-----RL 217

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL-EQNTPSVMNHYL 513
              L+A+ D I +IN  G I   N +  ++FG   E    + +   L      +  +  L
Sbjct: 218 AKTLQASLDAIVVINERGEIEDFNGSAEEIFGITHEAAKGRSYVNLLIPPEDRTTHHKRL 277

Query: 514 TEILSLDLRQTLE---KITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEK 568
            +       +  +   +      +  ++  + + + + P +    +   + DI+E +Q +
Sbjct: 278 MKFRETGETEVADKGRREFEMIDQNGRIFPVEMSVSQSPSAEGSLFIAYIRDITEKRQRE 337

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
            ++  A+  A      KS F A +SHE+RTPL  +I   +++++ R     +     Y +
Sbjct: 338 AEIITARDEALDAYQEKSRFFAMMSHEMRTPLNGVISALQLLQDDRL----DNEQKRYVD 393

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
               SG ++L  +ND+L I + E+G      +   +   ++  I+ ++  A      +  
Sbjct: 394 AAMVSGEILLSHINDVLAIERSEAGTYEQVQQACGMTVLMAGIINTMEPLAEAGGTRLHL 453

Query: 689 SFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS-----TTHTSNEEVILRVR 742
                    I+ D R+++QI +N+LSNAI F P GG + +      T+  + EE   +V 
Sbjct: 454 DLTRLEDKPIVTDPRAIQQILVNLLSNAIKFNP-GGDVTLRGWFAETSTKAGEEFHFQVE 512

Query: 743 DTGVGMTNYELEKAMKPFGQIPN-------SQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
           D G G+   ++++  + F  + +          +          + + +V    G+    
Sbjct: 513 DDGSGIPAEDIDRIFEDFVSLDSRYERRTGGTGLGLG-------IVRRLVKRLGGEIKCE 565

Query: 796 STPAKGTLIEIIFPL 810
           S   KG    I  P+
Sbjct: 566 SVLGKGACFTIRLPV 580


>gi|150009333|ref|YP_001304076.1| putative signal transduction histidine kinase [Parabacteroides
           distasonis ATCC 8503]
 gi|149937757|gb|ABR44454.1| putative signal transduction histidine kinase [Parabacteroides
           distasonis ATCC 8503]
          Length = 942

 Score =  277 bits (708), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 73/261 (27%), Positives = 121/261 (46%), Gaps = 9/261 (3%)

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
           ++  +  I    +    +    K AE  +  KS+FL+R+SHEIRTP+  I+G S +    
Sbjct: 526 FTALLLAIGARMKA-TVIQGNLKRAEAANLAKSEFLSRMSHEIRTPMNGIVGMSTIAMQN 584

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
                   +  +    +  S   +L ++ND+LD+SKIESGK+ L  E  +    + +  +
Sbjct: 585 ID---NTDKIKDCLEKVIMSSKHLLALINDVLDMSKIESGKVELRHESFNFRAFLQDFEN 641

Query: 674 LVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
           L    A  K I   T  A+++  +I+ D   + Q+  N+LSNA+ FTP+ G I +  + T
Sbjct: 642 LYGEQAKSKGISYETILASDLEVQIIGDSLRLNQVLSNLLSNALKFTPAKGMIKLRVSKT 701

Query: 733 SNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
             +     +   V DTG G+     +K  + F Q       +  GTGLGL + K      
Sbjct: 702 GEDQENVYLRFEVIDTGCGIAEENYDKIFESFEQENVDVTYKYGGTGLGLSIVKRFTGLM 761

Query: 789 MGKFYIFSTPAKGTLIEIIFP 809
            G  ++ S    G+   +  P
Sbjct: 762 GGGIHVTSVQGSGSTFTVDLP 782


>gi|29829054|ref|NP_823688.1| two-component system sensor kinase [Streptomyces avermitilis MA-4680]
 gi|29606160|dbj|BAC70223.1| putative two-component system sensor kinase [Streptomyces avermitilis
            MA-4680]
          Length = 1829

 Score =  277 bits (708), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 70/283 (24%), Positives = 136/283 (48%), Gaps = 26/283 (9%)

Query: 559  HDI----SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
             DI    +E ++ +  L    +       +KS+FLA +SHE+RTPL +++  ++++ +  
Sbjct: 1331 RDIEVKNTEIEEARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNA 1390

Query: 615  FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
               L  P+ +E+A  I  +G+ +L ++ND+LD+SK+E+GKM++    ++L + V    + 
Sbjct: 1391 DSNLT-PKQVEFAETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVDYVEAT 1449

Query: 675  VQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIII------ 727
             +    EK +      +  +P  +  D + + Q+  N+LSNA+ FT SG   ++      
Sbjct: 1450 FRPLTAEKGLDFSVRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDSGAVELVIRPAGA 1509

Query: 728  --------------STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
                          S        +   V DTG+G+   ++    + F Q   +   +  G
Sbjct: 1510 DVPVAIREQLLEAGSLRDADAGLIAFSVTDTGIGIAASKMRVIFEAFKQADGTTSRKYGG 1569

Query: 774  TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
            TGLGL +++ +     G+ +  S P +G+   +  PL+ +  P
Sbjct: 1570 TGLGLSISREIARLLGGEIHAASEPGRGSTFTLYLPLHPSELP 1612


>gi|119511775|ref|ZP_01630877.1| GAF Sensor Signal Transduction Histidine Kinase [Nodularia
           spumigena CCY9414]
 gi|119463548|gb|EAW44483.1| GAF Sensor Signal Transduction Histidine Kinase [Nodularia
           spumigena CCY9414]
          Length = 587

 Score =  277 bits (708), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 79/259 (30%), Positives = 133/259 (51%), Gaps = 16/259 (6%)

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
              +L  A++ AE+ S  KS+FLA VSHEIRTPL  +IGF ++I              ++
Sbjct: 321 LYKELEAARQKAEEASRLKSEFLANVSHEIRTPLNGMIGFLKLILEGMAD--DPEEQHQF 378

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
            +        +L+I+ND+LDI+KIE+GKM L   PV L+E   +  + ++  A  + +  
Sbjct: 379 TSEAHHLSIHLLNIINDILDIAKIEAGKMELVCSPVKLNELFEDVENFLRPQAESRNLSF 438

Query: 687 RTSFAN--NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN---------- 734
           R       +   +  + + + Q+ LN+ +NAI FT  GG I +S                
Sbjct: 439 RMHMLPTSDEIIVQGNYQRLLQVMLNLANNAIKFTQEGG-ITVSADLVLKQVEFQKQQFP 497

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
             V +RV DTG+G++  + +K  + F Q+  S+  +  GTGLGL +++ +++A  G+ + 
Sbjct: 498 GMVRVRVADTGIGVSLDKQDKLFQLFSQVDGSRTRQYGGTGLGLAISQKLIEAMGGEVHF 557

Query: 795 FS-TPAKGTLIEIIFPLYD 812
           +S     G+ +    PLY 
Sbjct: 558 YSLGEGLGSTVTFTVPLYQ 576


>gi|53712032|ref|YP_098024.1| putative two-component system sensor histidine kinase [Bacteroides
           fragilis YCH46]
 gi|52214897|dbj|BAD47490.1| putative two-component system sensor histidine kinase [Bacteroides
           fragilis YCH46]
          Length = 389

 Score =  277 bits (708), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 79/340 (23%), Positives = 143/340 (42%), Gaps = 20/340 (5%)

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL-EKITLGSTKEE- 536
            A  ++F      +        + +     +      IL   +++ + E       +E  
Sbjct: 54  PAGWEIFHNDSFPVSIARVYQGIYKEDRLRVIEACRGILKGKMKKVVVELRFWAKKREGF 113

Query: 537 --KLLSLRIIIKKLPFSSCYSLT---MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
             + L +  I  K+  +         +  I+  K  + +L+ AK+ AE+ +  KS  +A 
Sbjct: 114 VLEWLEMHAIPGKVDENGRLLTVEGSLMSITRRKVMEEELTAAKEKAEEANRLKSALIAN 173

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           ++HEIRTPL AI+GF+ ++              EY   I  +   +L ++ND++D+S IE
Sbjct: 174 MNHEIRTPLNAIVGFASLLS----IIDDEKEQQEYIGLIQSNTEHLLRLMNDVIDLSNIE 229

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
           SG M++    V LD  + E        A    +++      +   I  D   + QI  ++
Sbjct: 230 SGVMDIVGSDVVLDSLMKEMELTYVPKAETNNLVLAWDREQSNAHIYTDRDRLIQILEHL 289

Query: 712 LSNAIHFTPSGGQIIISTTHT--SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
           L NAI FT  G    +   +    N ++   V DTG G+ N + E   + F ++ +    
Sbjct: 290 LDNAIKFTTKG---TVRWGYQEKENGQIRFYVTDTGCGIPNDKKEVIFERFVKLDSFT-- 344

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             +G GLGL L K +++   G   + S   +G+      P
Sbjct: 345 --QGLGLGLSLCKIIIERMHGTIGVESEVGEGSTFWFTIP 382


>gi|88798399|ref|ZP_01113984.1| Signal transduction histidine kinase [Reinekea sp. MED297]
 gi|88778839|gb|EAR10029.1| Signal transduction histidine kinase [Reinekea sp. MED297]
          Length = 589

 Score =  277 bits (708), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 72/241 (29%), Positives = 128/241 (53%), Gaps = 10/241 (4%)

Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
             A++ S  KS+FLA +SHE+RTPL  IIG  ++++++   P        + N +  S  
Sbjct: 215 DRAQQASKAKSEFLATMSHELRTPLNGIIGSVQLMQHEAEQPSP------WLNSLAVSSE 268

Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN--- 692
            +L  +ND+LD S IESG++++   P  L + + +  ++    + +  +L+R    +   
Sbjct: 269 ALLTQINDVLDFSSIESGQISIEPAPCDLIQMIRDIEAVFYPQSVDAELLLRVLLPDTWS 328

Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752
           +   ++AD   ++QI LN+LSNA  FT  G QI+++     + +   RV DTG+G+   +
Sbjct: 329 SHCWVMADGHKIRQILLNLLSNAFKFTEHG-QIVLAVQKQEDGQFQWRVSDTGIGIPADK 387

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
           LE   + F Q  +  Q +  G+GLGL +++ + +   G   + S P +GT   +  PL  
Sbjct: 388 LEAIFQSFQQAESDTQRQYGGSGLGLAISRRLAELMGGSLTVTSKPGQGTDFTLTLPLPP 447

Query: 813 T 813
            
Sbjct: 448 A 448


>gi|323138654|ref|ZP_08073721.1| multi-sensor hybrid histidine kinase [Methylocystis sp. ATCC 49242]
 gi|322396142|gb|EFX98676.1| multi-sensor hybrid histidine kinase [Methylocystis sp. ATCC 49242]
          Length = 780

 Score =  277 bits (708), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 88/546 (16%), Positives = 182/546 (33%), Gaps = 37/546 (6%)

Query: 278 INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS 337
             + +  ++       N +K      S     +               ++  P    ++ 
Sbjct: 121 AEMMRRAREVAVEAQINLAKIEMFQQSEAALRASEERLRVANERFTAALEASP--VVIFE 178

Query: 338 HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397
                           Y S + I         L   K  ++      +  R   T   A 
Sbjct: 179 QDRELRCMWVHNSALGYASEEIIGK---TDHDLLERK--EDADCLAAIKRRVLDTGQPAR 233

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
             +      +     +   P        E +       +  + + +  ++    ++L   
Sbjct: 234 EEVFVTSDGKPRYFDLHVQP---RRSGHEVIGLLCTAVDITERKQSLDRLRKNDLRLRIA 290

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLF---GYPVEDILRKP----FTVFLEQNTPSVMN 510
           ++A      +I+ E  I   N     +    G P    ++          +  +  ++ +
Sbjct: 291 VDAA----YVISFEWDIQR-NEVRRYISTDPGLPPTPEMQPSTFEAVQQAVHPDDRALFS 345

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQ 566
             +   L        E        +  +  L    +    +            D++E ++
Sbjct: 346 ANVHAALESR-EGLYESEFRIVRPDGAVAWLFERGRVERDAEGRPAFLIGLSQDVTERRR 404

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
            +  L        +    K +FLA ++HE+R PL  +     V++    G L   +  E 
Sbjct: 405 IEEAL-------READQRKDEFLATLAHELRNPLAPLRNAIRVLRRDA-GRLSEEQRGEL 456

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
               DR    ++ +V+DLL++S+I  GK++L  E V L   +  AI   +         +
Sbjct: 457 FAMFDRQTEHLVRLVDDLLEVSRITRGKIDLRKERVDLATILRNAIETSRPAIERGGHEL 516

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
           R         + AD   + Q+  N+L+NA  +T  GG I ++      +E ++ VRD+GV
Sbjct: 517 RIDAGAERLILDADPVRLAQVFSNLLNNAAKYTEHGGSIALTVERR-GDEAVVSVRDSGV 575

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKGTLIE 805
           G+      +    F Q+  +      G G+GL L + +++ + G     S    +GT   
Sbjct: 576 GIPPEMAPRVFDIFTQVDRTLGRSQGGLGIGLALVRNLLEMHGGSVEAHSEGLGRGTTFV 635

Query: 806 IIFPLY 811
           +  P+ 
Sbjct: 636 VRLPVA 641



 Score = 46.6 bits (109), Expect = 0.017,   Method: Composition-based stats.
 Identities = 36/402 (8%), Positives = 83/402 (20%), Gaps = 39/402 (9%)

Query: 75  VFDPIPRTVRFT-WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDI-LHIDPNNH 132
            F           +  D       +       +G  + ++IG    D+ +     D    
Sbjct: 164 RFTAALEASPVVIFEQDRELRCMWV---HNSALGYASEEIIGKTDHDLLERKEDADCLAA 220

Query: 133 IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192
           I   +        +      +G   Y   DL   P  S   E  G               
Sbjct: 221 IKRRVLDTGQPAREEVFVTSDGKPRYF--DLHVQPRRSG-HEVIGL--LCTAVDITERKQ 275

Query: 193 PRALGKRLDKKFSHLHEIKK------GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY 246
                ++ D +     +              E  +Y       PP      +   ++ + 
Sbjct: 276 SLDRLRKNDLRLRIAVDAAYVISFEWDIQRNEVRRYISTDPGLPPTPEMQPSTFEAVQQA 335

Query: 247 YAHKDDVL-KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
               D  L     +  L S E     +      +       +     ++        +  
Sbjct: 336 VHPDDRALFSANVHAALESREGLYESEFRIVRPDGAVAWLFERGRVERDAEGRPAFLIGL 395

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365
               +     +E                             + L       +  +  A  
Sbjct: 396 SQDVTERRRIEEALREAD------------QRKDEFL----ATLAHELRNPLAPLRNAIR 439

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW------NRENSLAMTFIPFE 419
           +          +       M  R     +     L  +        +             
Sbjct: 440 VLRRDAGRLSEEQRGELFAMFDRQTEHLVRLVDDLLEVSRITRGKIDLRKERVDLATILR 499

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
            A +      + G     +D    +  ++ + ++L  +    
Sbjct: 500 NAIETSRPAIERGGHELRIDAGAERLILDADPVRLAQVFSNL 541


>gi|303241560|ref|ZP_07328060.1| histidine kinase [Acetivibrio cellulolyticus CD2]
 gi|302590878|gb|EFL60626.1| histidine kinase [Acetivibrio cellulolyticus CD2]
          Length = 1240

 Score =  277 bits (708), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 77/259 (29%), Positives = 135/259 (52%), Gaps = 1/259 (0%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I+E K+ ++ L       ++    K+DF + VSHE+RTPLT I+G  E + + ++     
Sbjct: 585 ITEHKEIESMLIETNNKLKELDQAKTDFFSNVSHELRTPLTIILGQVEAVLSGQYYKNTL 644

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
               +    I  +   +L ++N LLD SKI++GKM L+ +PV+++  +S  IS V+  A+
Sbjct: 645 EPNSDIFKTIQSNALRLLKLINTLLDFSKIQAGKMTLNRQPVNINRFLSSYISAVKSSAS 704

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
           +K I +      +      D    + +  N++SNA+ FT S G III           + 
Sbjct: 705 QKNINMIFVDNADDTFGFIDKDLFEAVIANLISNALKFTDSEGYIIIELNKLDT-SFEIV 763

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V+D+G+G+   +L+     F QI NS+  +  GTG+GL   K +V+ + GK  + S   K
Sbjct: 764 VKDSGIGIPKDKLDTIFDRFSQIENSKSSKVRGTGIGLAYTKEIVELHEGKISVSSILGK 823

Query: 801 GTLIEIIFPLYDTSHPHDC 819
           G++  +  P+ ++ +   C
Sbjct: 824 GSVFAVSLPVCESKNASKC 842


>gi|291618633|ref|YP_003521375.1| BarA [Pantoea ananatis LMG 20103]
 gi|291153663|gb|ADD78247.1| BarA [Pantoea ananatis LMG 20103]
          Length = 928

 Score =  277 bits (708), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 91/421 (21%), Positives = 174/421 (41%), Gaps = 25/421 (5%)

Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
           A  A    +      +L +   P        + +P    +P          +++++ ++L
Sbjct: 131 AIRALPEDVSVEGSGNLLILRKPIISERYAVDELPGQDAKPAGNPLGYVAIELDLQSVRL 190

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
               E       +     ++L        LF Y +   +  P    +             
Sbjct: 191 QQYRE-------VFIATLMLLFCLCIAM-LFAYRLMRDVTGPIRNMVSTVDR-----IRR 237

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN----K 570
             L   +   +             +++ +                D+ E  ++      +
Sbjct: 238 GQLDSRVEGHMLGELSILKNGINAMAMSLTAYHEEMQHNIDQATWDLRETLEQLEIQNVE 297

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           L  AKK A++ +  KS+FLA +SHE+RTPL  ++GF+  +              +Y   I
Sbjct: 298 LDLAKKRAQEAARIKSEFLANMSHELRTPLNGVLGFTRQMLKTPLRTT----QRDYMLTI 353

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
           +RS N +L I+ND+LD S++E+GK+ L   P  L   + E + L+   A+EK + +    
Sbjct: 354 ERSANNLLSIINDVLDFSRLEAGKLMLESIPFPLRATLDETLVLLAPSAHEKGLELTVVC 413

Query: 691 ANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDTGV 746
            N++P  ++ D   ++QI +N++ NAI FT  G    ++   T   ++ E+ ++VRDTG+
Sbjct: 414 DNSVPDNVIGDALRLQQILINLMGNAIKFTEKGTINLRVEQHTITATHVELEIQVRDTGI 473

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G++  +  +  + F Q   S   R  G+GLGL + + +V    G+    S    G+   +
Sbjct: 474 GISEEQQAQLFQAFRQADASISRRHGGSGLGLVITQKLVREMNGEITFVSRQNHGSTFWV 533

Query: 807 I 807
            
Sbjct: 534 R 534


>gi|75910975|ref|YP_325271.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
 gi|75704700|gb|ABA24376.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
          Length = 1195

 Score =  277 bits (708), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 66/267 (24%), Positives = 136/267 (50%), Gaps = 10/267 (3%)

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
                 E ++ +  +    +     S +KS+FLA +SHE+RTPL +++  ++++ +   G
Sbjct: 500 VARKNQEIEKARKFIEEKAEQLALSSKYKSEFLANMSHELRTPLNSLLILAKLLADNSSG 559

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
            L N + +EY+  I  +G  +L+++ND+LD++KIESG +++  EP+   +         +
Sbjct: 560 NLSN-KQVEYSQTIYSAGTDLLELINDILDLAKIESGTLSVELEPIDFADLHDYIERTFR 618

Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS-- 733
             A +K +         +P  I +D + ++QI  N+L+NA+ FT  GG + +        
Sbjct: 619 QVAQDKGLSFSIELDERLPSTIFSDPKRLQQILKNLLANALKFTEEGG-VTLRIGLDQIN 677

Query: 734 --NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
             +  +   + DTG+G+   + +   + F Q+  +   +  GTGLGL +++ +     G+
Sbjct: 678 TNHPMITFAISDTGIGIPQEKQQIIFEAFQQVDGTTSRKYGGTGLGLSISRELTQMLGGR 737

Query: 792 FYIFSTPAKGTLIEIIFPLYDTSHPHD 818
             + S P +G++  +  P    ++P +
Sbjct: 738 LGLVSQPGQGSIFTLYLP---QTYPEN 761


>gi|91975823|ref|YP_568482.1| PAS/PAC sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris BisB5]
 gi|91682279|gb|ABE38581.1| PAS/PAC sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris BisB5]
          Length = 510

 Score =  277 bits (708), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 74/527 (14%), Positives = 193/527 (36%), Gaps = 30/527 (5%)

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIA 363
             +    S+     +    + +D   +  + +         + +   L            
Sbjct: 1   MTDQAQSSSEALARDRRLQQGIDSYGVGSWELNLATRELAWSATTRRLLGVAPDA----- 55

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
             +        +   +  +     +           +  +    + S  +         +
Sbjct: 56  -PVDFDTFVSLVDPEDRDRVTQAVQRTIEHSEYLDIMFRVADRGQPSHWLRARGGLVR-E 113

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
                   GI  +    ++ ++++ ++  QL SIL+   D + +I+  GI+   + A  +
Sbjct: 114 NGTAGYLCGIVLDIDQQKVLEQELRLQQNQLRSILDTVPDAMILIDGRGIMRFFSSAAER 173

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT--LEKITLGSTKEEKLLSL 541
           +FG    + + +  ++ + +   S  ++Y++   +   R    + +I  G  K+     +
Sbjct: 174 MFGLSEREAIGQNISILMPRPDASRHDNYISRYSNTGERHIIGIGRIVTGQRKDGTTFPI 233

Query: 542 RIIIKKL--PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS--HKSDFLARVSHEIR 597
            + I ++       ++  + D++E++Q + +L   +      S      +  + ++HE+ 
Sbjct: 234 HLSIGEMVSSGERYFTGFIRDLTEYQQTQARLHELQAELVHVSRLTAMGEMASALAHELN 293

Query: 598 TPLTAIIGFSEVIKNQRFGPLGN--PRYIEYANYIDRSGNLVLDIVNDLLDI-SKIESGK 654
            PL+AI  + +  +    G       +                 I+  L D  ++ ES  
Sbjct: 294 QPLSAISNYMKGSRRLLAGSSDPNISKIENAMERAAEQALRAGQIIRRLRDFVARGES-- 351

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714
                   SL + V EA +L    A E+ +++R         +L D   ++Q+ +N+  N
Sbjct: 352 ---EKRVESLAKLVEEAGALGLTGAREQGVVLRFHMDQANDLVLVDRVQIQQVLVNLFRN 408

Query: 715 AIHFTPSGGQIIIST--THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           A+    +  +  +S      +++ + + V D+G G+ +    K  + F    ++      
Sbjct: 409 ALEAMATSRRKELSASNARVADDMIEVTVADSGSGIPDDVKAKLFQTFFTTKDT------ 462

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819
           G G+GL +++++++A+ G+ +  +  A G       P+       D 
Sbjct: 463 GMGVGLSISRSIIEAHGGRMWAETNSAGGATFRFTLPMAPGEDVTDA 509



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/298 (9%), Positives = 63/298 (21%), Gaps = 28/298 (9%)

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLT 244
                  +     D++     +     S          +  +       +     V   T
Sbjct: 2   TDQAQSSSEALARDRRLQQGIDSYGVGSWELNLATRELAWSATTRRLLGVAPDAPVDFDT 61

Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTIN--LNQYTKKQYFGTLQNNSKES--- 299
                  +        +  + E S      F   +     +  +   G ++ N       
Sbjct: 62  FVSLVDPEDRDRVTQAVQRTIEHSEYLDIMFRVADRGQPSHWLRARGGLVRENGTAGYLC 121

Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVD 358
              L       L       +N     +D  P     +   G + + + +   +      +
Sbjct: 122 GIVLDIDQQKVLEQELRLQQNQLRSILDTVPDAMILIDGRGIMRFFSSAAERMFGLSERE 181

Query: 359 DIEIAGGLSTLLDAPKLSDN--------------NAIKPVMLYRSDRTCIAASARLHTIQ 404
            I     +          DN                 + V   R D T       +  + 
Sbjct: 182 AIGQNISILMPRPDASRHDNYISRYSNTGERHIIGIGRIVTGQRKDGTTFPIHLSIGEMV 241

Query: 405 WNRENSLAMTFIPFEKANQFPENMP----QNGIEPEDVDTRINKRKMEIEVMQ-LCSI 457
            + E           +  Q    +     +                +  E+ Q L +I
Sbjct: 242 SSGERYFTGFIRDLTEYQQTQARLHELQAELVHVSRLTAMGEMASALAHELNQPLSAI 299


>gi|265984104|ref|ZP_06096839.1| multi-sensor hybrid histidine kinase [Brucella sp. 83/13]
 gi|264662696|gb|EEZ32957.1| multi-sensor hybrid histidine kinase [Brucella sp. 83/13]
          Length = 911

 Score =  277 bits (708), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 98/622 (15%), Positives = 201/622 (32%), Gaps = 43/622 (6%)

Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271
           +G      + Y   +  +    +R  ++V +     +     L       L+++E     
Sbjct: 158 RGQIVYANQAYARMTGATDADGIRPLDQVLASEPAASDAIYRLTNAVRDGLSAQEEVRIS 217

Query: 272 QEDFHTINLNQY--TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE-----NLTPE 324
                  N +      +     L+  ++     ++ +         ++            
Sbjct: 218 GGLSRGANGSLAPVWYRIKARALEGGAEFKGPLVAWQVADISEERAEQERFFQELQEAIN 277

Query: 325 TVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
            +D  P  FF     G + Y N +               +  L+ ++    ++       
Sbjct: 278 HLDHAPAGFFSANPAGRIIYLNATLAEWLGVDLTQFTPGSLTLNDIVAGSGMA------L 331

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
           +   +++      +     +      SLA+ F    +  +         I  +  +   +
Sbjct: 332 IKAVKAEPGTSRNTVIDLDLIKRNGQSLAVRFYHRVQTARDGMPGTTRTIVLDRAEGDDS 391

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG--YPVEDILRKPFTVFL 501
                   ++      +    IA ++ EG  L TN     +F      + I R+     +
Sbjct: 392 SVAQRSAEVRFTRFFNSAPMAIAAVDAEGHTLRTNARFLDIFSGVVDRDAIDRRVKLENV 451

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDI 561
                    +                 T+    EE+ +   +                 I
Sbjct: 452 VHERDRETFNKALAAAFAGQASISPVDTVLPGNEERHIRFYMSPVTDLGGEAAEEAAI-I 510

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           S  +  + K    +    ++          ++H+    LTAII  S+++         +P
Sbjct: 511 SAVETTEQKALENQMAQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNH--RASDP 568

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
            + +  N I ++ N    +V  LL  S+    +  L  E + L + +++ + ++      
Sbjct: 569 SFPDIMN-IKQNANRAASLVRQLLAFSR----RQTLRPEVLDLTDVLAD-LRMLLARLVG 622

Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT----------- 730
           K I ++     ++  + ADL   +Q+A+N+  NA    P GGQI + T            
Sbjct: 623 KDIELKIDHGRDLWPVKADLGQFEQVAVNLAVNARDAMPEGGQITLRTRNIPAADAAKLH 682

Query: 731 ---HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
                  + V+  V DTG G+    LEK  +PF          G+GTGLGL +   ++  
Sbjct: 683 YRDLPEADYVVFEVEDTGTGIPADVLEKIFEPFFTTK----EVGKGTGLGLSMVYGIIKQ 738

Query: 788 NMGKFYIFSTPAKGTLIEIIFP 809
             G  Y  S   KGT  +I  P
Sbjct: 739 TGGFIYCDSEVGKGTTFKIFLP 760



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/238 (11%), Positives = 66/238 (27%), Gaps = 7/238 (2%)

Query: 319 ENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
           ++L    +D  P    +    G + YAN ++  +T     D I     +  L   P  SD
Sbjct: 138 QDLAHSFMDTQPEGTVISDPRGQIVYANQAYARMTGATDADGIRPLDQV--LASEPAASD 195

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
                   +                 +    +   + +    +A +         +  + 
Sbjct: 196 AIYRLTNAVRDGLSAQEEVRISGGLSRGANGSLAPVWYRIKARALEGGAEFKGPLVAWQV 255

Query: 438 VDTRINKRKMEIEVMQLC-SI--LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
            D    + + E    +L  +I  L+    G    N  G I+  N  +++  G  +     
Sbjct: 256 ADISEERAEQERFFQELQEAINHLDHAPAGFFSANPAGRIIYLNATLAEWLGVDLTQFTP 315

Query: 495 KPFT-VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
              T   +   +   +   +           ++   +    +   +     ++     
Sbjct: 316 GSLTLNDIVAGSGMALIKAVKAEPGTSRNTVIDLDLIKRNGQSLAVRFYHRVQTARDG 373



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 47/420 (11%), Positives = 103/420 (24%), Gaps = 38/420 (9%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD--ILHIDPNNHIGDLLKRQNTWYGKT 147
           D  G +   ++   +  G      I   L  V        D    + + ++   +   + 
Sbjct: 156 DPRGQIVYANQAYARMTGATDADGI-RPLDQVLASEPAASDAIYRLTNAVRDGLSAQEEV 214

Query: 148 TL-----WPIEGTNLYVPIDLAALPIYSRNREFSG-FRGFGIVHVNRVDNDPRALGKRLD 201
            +         G+   V   + A  +     EF G    + +  ++    +     + L 
Sbjct: 215 RISGGLSRGANGSLAPVWYRIKARALEGGA-EFKGPLVAWQVADISEERAEQERFFQELQ 273

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR------MKNKVSSLTEYYAHKDDVLK 255
           +  +HL     G  S       I+   +    L           ++           ++K
Sbjct: 274 EAINHLDHAPAGFFSANPAGRIIYLNATLAEWLGVDLTQFTPGSLTLNDIVAGSGMALIK 333

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN--NSKESFEYLSHRNHPSLSA 313
             K    TS  + +                     T ++          L        S 
Sbjct: 334 AVKAEPGTSRNTVIDLDLIKRNGQSLAVRFYHRVQTARDGMPGTTRTIVLDRAEGDDSSV 393

Query: 314 YFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLT-KYKSVDDIEIAGGLSTLLD 371
                E       +  P+    V + G+    N  FL +       D I+    L  +  
Sbjct: 394 AQRSAEVRFTRFFNSAPMAIAAVDAEGHTLRTNARFLDIFSGVVDRDAIDRRVKLENV-V 452

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
             +  +         +    +       L     N E  +     P              
Sbjct: 453 HERDRETFNKALAAAFAGQASISPVDTVL---PGNEERHIRFYMSPVTDLGGEAAEEAAI 509

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSI----------LEATSDGIAIINREGIILSTNRAV 481
               E  + +  + +M  +  ++ ++                 I + +    +L TN   
Sbjct: 510 ISAVETTEQKALENQM-AQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSD---LLLTNHRA 565



 Score = 48.9 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 45/134 (33%), Gaps = 12/134 (8%)

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY-LT 514
           S ++   +G  I +  G I+  N+A +++ G    D   +P    L     +    Y LT
Sbjct: 143 SFMDTQPEGTVISDPRGQIVYANQAYARMTGATDAD-GIRPLDQVLASEPAASDAIYRLT 201

Query: 515 EILSLDLRQTLEKITLG---STKEEKLLSLRIIIKKLPFSSC-------YSLTMHDISEW 564
             +   L    E    G         L  +   IK               +  + DISE 
Sbjct: 202 NAVRDGLSAQEEVRISGGLSRGANGSLAPVWYRIKARALEGGAEFKGPLVAWQVADISEE 261

Query: 565 KQEKNKLSHAKKIA 578
           + E+ +     + A
Sbjct: 262 RAEQERFFQELQEA 275


>gi|463195|gb|AAA20829.1| pectate lyase [Pseudomonas viridiflava]
          Length = 896

 Score =  277 bits (708), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 76/243 (31%), Positives = 140/243 (57%), Gaps = 8/243 (3%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  A+K A + S  KS+FLA +SHEIRTPL  I+GF+ +++     P    R  +Y   
Sbjct: 249 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSELTP----RQYDYLGT 304

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I++S + +L I+N++LD SKIE+GK+ L   P +L + + + ++++   A+ K++ + + 
Sbjct: 305 IEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSL 364

Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQI---IISTTHTSNEEVILRVRDTG 745
              + P  +  D   ++QI  N++SNAI FT  G  +   ++      + ++ + V+DTG
Sbjct: 365 VYRDTPLALSGDPLRLRQILTNLVSNAIKFTRQGTIVARAMLEDETEEHAQLRISVQDTG 424

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+++ ++    + F Q  NS   +  GTGLGL ++K +++   G+  + STP +G+   
Sbjct: 425 IGLSSQDVRALFQAFSQADNSISRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFW 484

Query: 806 IIF 808
           I  
Sbjct: 485 ISL 487


>gi|315125702|ref|YP_004067705.1| sensory box histidine kinase/response regulator [Pseudoalteromonas
           sp. SM9913]
 gi|315014216|gb|ADT67554.1| sensory box histidine kinase/response regulator [Pseudoalteromonas
           sp. SM9913]
          Length = 927

 Score =  277 bits (708), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 75/257 (29%), Positives = 128/257 (49%), Gaps = 13/257 (5%)

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           +E +    +L    + A K S  K+ FLA +SHEIRTP+  +IG  ++++        + 
Sbjct: 257 TEVQSRTFELEKQTQKALKASETKTTFLATMSHEIRTPMNGVIGTIDLLRQTEL----DG 312

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
                +  I  S   +L I++D+LD SKIE+GK+N+   P S+ + + E   ++   A  
Sbjct: 313 AQQRLSTIIRESAFSLLSILDDILDFSKIEAGKLNIDPTPFSVADTLEEVAKVLSSVAKN 372

Query: 682 KRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG------QIIISTTHTSN 734
           + + +  S A +IP  ++ D   V+Q+  N+ SNAI FT + G      +I +   H + 
Sbjct: 373 RHLELDLSIAPDIPNNLMGDSVRVRQVLYNLCSNAIKFTSTNGSTQGRVKISVEVAHNTA 432

Query: 735 EE--VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
           +   +   V D G GM+  +L K   PF Q  +S      GTGLGL + K++ +  +G  
Sbjct: 433 DHFTLRFCVVDNGKGMSQSQLRKIFSPFTQAESSITREFGGTGLGLSICKSLTELMLGTI 492

Query: 793 YIFSTPAKGTLIEIIFP 809
           ++ S    G+   +  P
Sbjct: 493 HVTSHEGIGSEFTVELP 509


>gi|300023636|ref|YP_003756247.1| multi-sensor hybrid histidine kinase [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299525457|gb|ADJ23926.1| multi-sensor hybrid histidine kinase [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 868

 Score =  277 bits (708), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 117/690 (16%), Positives = 227/690 (32%), Gaps = 77/690 (11%)

Query: 160 PIDLAALPIYSRNREFSGF-RGFGIVHV-NRVDNDPRALGKRLDKKFSHLHEIKKGHSSV 217
           P+ L  + + +    F  F    G + +  RV                 +   +      
Sbjct: 68  PVLLTVIAVLAMLGMFLIFGVAAGHIRIGARVAPGDLLKAATDASDEPQILAHQDSTVVY 127

Query: 218 EKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHT 277
                +    +         + V S           L        +  E           
Sbjct: 128 ANAALEDMFGRHEAGPFAALDAVMSAEPEATQALFRLTRAAERGESRSEDVRLRPGPSRR 187

Query: 278 INLNQYTKKQYF------GTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI 331
               + + + +       GTL       +         +  A             D  P 
Sbjct: 188 PAWVRISVRPFVSTGNGDGTLLRQRLALWRIRDISKDKAQEAQRVGTLETALAAFDTMPA 247

Query: 332 PFF-VYSHGNLFYANPSFLLLTKYK---------SVDDIEIAGGLSTLLDAPKLSDNN-A 380
            F  +   G + + N +F     Y           + ++    G   L +   + + +  
Sbjct: 248 GFMSIAGDGTILHVNAAFEQWLGYPVGSLRTHHLRLAELAGGDGARLLENMAGIPEADQR 307

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
           +  + L R D   +                L +   P          +         +  
Sbjct: 308 VVDLDLTRQDGRMVP---------------LTLLVEPAGGHPDEGFTITAINRLTAGLGD 352

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF--GYPVED-ILRKPF 497
           R  +       ++     ++   GIA I+ EG I S N A  +L   G P +D +  +  
Sbjct: 353 RTPQD------VRASQFFQSAPFGIATIDGEGRIASCNAAFMRLVLDGRPAQDVLACEAL 406

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT 557
               +    + +   L E+L+               +++    + +           +  
Sbjct: 407 GRTGDAGERTRIEEGLAEVLAGRGN-VQPIEITSGDQKQFTCRVFMSPLAAVSGGAAAAL 465

Query: 558 -MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            + D +E KQ ++++S A+K+         +    ++H+    LTAIIGFS+++      
Sbjct: 466 YVIDATEQKQLEDRVSQAQKM-----EAVGNLAGGIAHDFNNVLTAIIGFSDLLLQTHRP 520

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
              +P Y +    I  + N   ++V  LL  S+ ++ ++++      L+E  S+  ++++
Sbjct: 521 --SDPSYKD-IKNIQSAANRAANLVAGLLGFSRKQTQQVSV----FDLNELTSDMRAMLK 573

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT------ 730
               EK I ++     ++  + AD   + Q+ LN+  NA    PSGG++ I T       
Sbjct: 574 TQVREK-IDLQFQAGRDLWYVRADSNQLYQVILNLARNARDAMPSGGKLTIRTQNVTERE 632

Query: 731 ---------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
                     T  E V+L + DTG GM+   + K  +PF          G+GTGLGL   
Sbjct: 633 SQRMSPAAGFTPGEYVLLEISDTGTGMSPEVMAKIFEPFFTTKG----IGKGTGLGLASV 688

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
             ++  + G  +  S   KGT  +I  P Y
Sbjct: 689 YGIIKQSGGYIFPESELGKGTTFKIFLPRY 718


>gi|91976523|ref|YP_569182.1| periplasmic sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris BisB5]
 gi|91682979|gb|ABE39281.1| ATP-binding region, ATPase-like [Rhodopseudomonas palustris BisB5]
          Length = 530

 Score =  277 bits (708), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 104/249 (41%), Positives = 155/249 (62%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I E +Q K     A+  AE  +  KS FLA++SHE+RTPL AI+GFSEV+K++ FG    
Sbjct: 240 IGELEQAKAISDEARHRAEAANVAKSRFLAQMSHELRTPLNAILGFSEVMKSEIFGAHAV 299

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
           P Y +Y+  I  SG  +L+++N++LD+S+IE+G+  L+ E +SL   VS+   L++L A+
Sbjct: 300 PVYKDYSADIHNSGVHLLNLINEILDLSRIEAGRYELNEEAISLVHVVSDCHHLLKLRAS 359

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
            + I I   F   +PRI  D R+V+Q+ LN+LSNAI FTP GG+I +    T++    L 
Sbjct: 360 SRGITIHEVFEQGMPRIWGDERAVRQVVLNLLSNAIKFTPQGGEIWLKVGWTASGGQYLS 419

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V+DTG G+   E+   +  FGQ  NS +   +G GLGLP+AK++VD + G F + S    
Sbjct: 420 VKDTGSGIPEEEIPIVLASFGQGSNSIKSAEQGAGLGLPIAKSLVDMHGGTFTLKSKLRI 479

Query: 801 GTLIEIIFP 809
            T + + FP
Sbjct: 480 STEVIVTFP 488


>gi|95931145|ref|ZP_01313869.1| periplasmic sensor hybrid histidine kinase [Desulfuromonas
           acetoxidans DSM 684]
 gi|95132792|gb|EAT14467.1| periplasmic sensor hybrid histidine kinase [Desulfuromonas
           acetoxidans DSM 684]
          Length = 798

 Score =  277 bits (708), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 82/264 (31%), Positives = 133/264 (50%), Gaps = 14/264 (5%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E      +L  AKK A++ S+ KS FLA +SHEIRTP+  ++G +E + ++      + +
Sbjct: 278 ELHVTIQELDDAKKAAQEASAAKSRFLANMSHEIRTPMIGVLGMAEQLMSRDL----DDQ 333

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             E    I  SG  +  I+NDLLDISKIE+GK+ L     +  E + +A+ L+   A +K
Sbjct: 334 DAELVKTIYSSGESLQAILNDLLDISKIEAGKLELDLHQFTPIETLDQAVELLADNAFKK 393

Query: 683 RILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH----TSNEEV 737
            + + T     +P  +  D   ++QI LN+LSNAI FT  G  I++        T++  +
Sbjct: 394 GLELTTVTHTAVPSTLTGDAGRLRQIILNLLSNAIKFTGDG-HIVVDMNWLPTNTTSGNL 452

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
           I+ V+D+G+G+ +         F Q  +S   +  GTGLGL + K +V    G   +   
Sbjct: 453 IVSVKDSGIGLDDAAKNNIFTAFTQADSSTSRKYGGTGLGLTIVKQLVGLMDGDISVRDN 512

Query: 798 PAKGTLIEIIFPLYDTS----HPH 817
              G++  +  P    +     PH
Sbjct: 513 EDHGSIFTVTIPFKSIAISPVEPH 536


>gi|157962786|ref|YP_001502820.1| PAS/PAC sensor signal transduction histidine kinase [Shewanella
           pealeana ATCC 700345]
 gi|157847786|gb|ABV88285.1| PAS/PAC sensor signal transduction histidine kinase [Shewanella
           pealeana ATCC 700345]
          Length = 439

 Score =  277 bits (708), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 76/403 (18%), Positives = 155/403 (38%), Gaps = 34/403 (8%)

Query: 409 NSLAMTFIPFEKANQFPENMPQN-GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
           N            N          GI       R    ++   + +     EA  D   +
Sbjct: 54  NFWLWHDRRLTPPNGSGSWEGVFNGIYRLQGKNRKRVSQLAFLLGRFRQGAEALPDAAVV 113

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
           ++ E  IL  N+    L G+       +     +     S        + + + ++ L  
Sbjct: 114 LDSEHNILWCNKLAQLLLGFVWPQDNGQRIDNLIRHPDFSAY------LKNKEYQEPL-- 165

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
                  E  +L +RI+      +    L   DI+  +Q +                + +
Sbjct: 166 ELSSPQSEGHILEIRIM---GYGAGQLLLIARDITRVRQLEG--------------MRKE 208

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           F+A VSHE++TPLT + G+ E++ +       N   +     + +    +  +V  LL +
Sbjct: 209 FVANVSHELKTPLTVLQGYLEMMHSMAEPDSPN---VRALEQMQQQTTRMRSMVEQLLAL 265

Query: 648 SKIE-SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706
           S+IE +  ++L  + V++ + +          A E +  I       +  I  +   ++ 
Sbjct: 266 SRIEDASDVSLEVK-VNMKQMMDILRDEALALAQE-QYEISFYCEPGL-NIYGNELQLRS 322

Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
           +  N++SNAI +T  GG++ IS    +   +   V+D G G+  + + +  + F ++ ++
Sbjct: 323 VCSNLISNAIRYTEPGGKVEISWRKIAIGGL-FSVKDNGEGIAPHHIGRLTERFYRVDSA 381

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +  +  GTGLGL + K  +  +  +  I S   KG+    + P
Sbjct: 382 RSRQSGGTGLGLAITKHALHNHQSELNIASQLGKGSTFSFVIP 424


>gi|167644599|ref|YP_001682262.1| multi-sensor signal transduction histidine kinase [Caulobacter sp.
           K31]
 gi|167347029|gb|ABZ69764.1| multi-sensor signal transduction histidine kinase [Caulobacter sp.
           K31]
          Length = 501

 Score =  277 bits (708), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 67/366 (18%), Positives = 161/366 (43%), Gaps = 19/366 (5%)

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
            L SIL++  D + +I+  G++ S + A  +LFG+   + + +  ++ +     +  + +
Sbjct: 131 HLQSILDSAPDAVIVIDPAGLMTSFSPAAERLFGWTSAEAIGRNVSLLMPDPDGAGHDGF 190

Query: 513 LTEILSLDLRQTL--EKITLGSTKEEKLLSLRIIIKKLPFSSC-YSLTMHDISEWKQEKN 569
           L        ++ +   ++ +G  ++     + + + +   +   Y+  + D+++ +Q + 
Sbjct: 191 LANYSRSGEKRIIGTGRVVVGKRRDGSTFPMELAVGETRGARPFYTGFIRDLTDRQQTEA 250

Query: 570 KLSHAKKIAEKESS--HKSDFLARVSHEIRTPLTAIIGFSEVIKN--QRFGPLGNPRYIE 625
           +L   +      S      +  + ++HE+  PL+AI       +    R  P    +  +
Sbjct: 251 RLRDLQTELVHVSRLTAMGEMASTLAHELNQPLSAIANLLTGSRRLLDRGRPEDQAKVRD 310

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
             +          D+++ + +  +  +        P SL + V +A +L  + A E  + 
Sbjct: 311 AVDKASAQALRAGDVIHRMREFVRRGA----TERAPESLSKVVEDAAALALIGAREHLVQ 366

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFT--PSGGQIIISTTHTSNEEVILRVRD 743
            R         + AD   ++Q+ +N++ NA+         ++ I++   +N  V + V D
Sbjct: 367 TRLQLDPAADAVYADRVQIQQVLVNLIRNAVDAMADSPRRELTIASQRLANGSVQVSVTD 426

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TG G+++   E+  +PF         + EG G+GL +++++V+A+ GK +  + P  GT+
Sbjct: 427 TGSGISDDFRERLFQPFMTT------KAEGMGVGLSISRSIVEAHGGKIWADANPTGGTV 480

Query: 804 IEIIFP 809
                P
Sbjct: 481 FHFTLP 486



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/240 (12%), Positives = 59/240 (24%), Gaps = 9/240 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G +   S    +  G  + + IG  +  +      DP+    D      +  G+  
Sbjct: 146 IDPAGLMTSFSPAAERLFGWTSAEAIGRNVSLLMP----DPDGAGHDGFLANYSRSGEKR 201

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF--GIVHVNRVDNDPRALGKRLDKKFSH 206
           +       +    D +  P+     E  G R F  G +          A  + L    + 
Sbjct: 202 IIGTGRVVVGKRRDGSTFPMELAVGETRGARPFYTGFIRDLTDRQQTEARLRDLQ---TE 258

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
           L  + +  +  E           P   +      S         +D  K        S +
Sbjct: 259 LVHVSRLTAMGEMASTLAHELNQPLSAIANLLTGSRRLLDRGRPEDQAKVRDAVDKASAQ 318

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
           +              +    +      +   E    L+               +   + V
Sbjct: 319 ALRAGDVIHRMREFVRRGATERAPESLSKVVEDAAALALIGAREHLVQTRLQLDPAADAV 378



 Score = 48.5 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/308 (8%), Positives = 74/308 (24%), Gaps = 28/308 (9%)

Query: 321 LTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
                +D  P    V    G +   +P+   L  + S + I     L  L+  P  + ++
Sbjct: 131 HLQSILDSAPDAVIVIDPAGLMTSFSPAAERLFGWTSAEAIGRNVSL--LMPDPDGAGHD 188

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
                     ++  I     +   + +                         G   +  D
Sbjct: 189 GFLANYSRSGEKRIIGTGRVVVGKRRDGSTFPM----ELAVGETRGARPFYTGFIRDLTD 244

Query: 440 TRINKRKMEIEVMQLCSI--LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
            +  + ++     +L  +  L A  +  + +  E      N+ +S +          +  
Sbjct: 245 RQQTEARLRDLQTELVHVSRLTAMGEMASTLAHE-----LNQPLSAIANLLTGS---RRL 296

Query: 498 TVFLEQNTPSVMNHYLTEILSLD-LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556
                    + +   + +  +       +        +          + K+   +    
Sbjct: 297 LDRGRPEDQAKVRDAVDKASAQALRAGDVIHRMREFVRRGATERAPESLSKVVEDAAALA 356

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            +       Q + +L  A      +       L  +          I    + + +    
Sbjct: 357 LIGAREHLVQTRLQLDPAADAVYADRVQIQQVLVNL----------IRNAVDAMADSPRR 406

Query: 617 PLGNPRYI 624
            L      
Sbjct: 407 ELTIASQR 414


>gi|84390468|ref|ZP_00991479.1| sensor protein TorS [Vibrio splendidus 12B01]
 gi|84376728|gb|EAP93604.1| sensor protein TorS [Vibrio splendidus 12B01]
          Length = 1005

 Score =  277 bits (708), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 81/238 (34%), Positives = 124/238 (52%), Gaps = 7/238 (2%)

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
           +  AE+ S  KS FLA +SHEIRTP+  ++G + ++K+    PL       YA+ I+RSG
Sbjct: 460 RNAAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLKDTGLDPL----QSGYADIINRSG 515

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
             +L I+ND+LD SKIE+G + +      L + V +   L++  A EK++       N++
Sbjct: 516 KNLLAILNDVLDYSKIEAGHLEIRAASFDLYQMVQDTYQLMEGRAAEKKLNFDFHIENDV 575

Query: 695 PRIL-ADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVILRVRDTGVGMTNYE 752
            R    D+  + QI  N++ NAI FT SG   I IS        V+  V DTGVG+   E
Sbjct: 576 QRYWRGDVTRISQILNNLVGNAIKFTESGSVDIFISLDIEDENRVMFEVSDTGVGIDASE 635

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
                  F Q  + +  +  GTGLGL ++K+++ A  G   + S   +G+      PL
Sbjct: 636 QACLFDAFTQTDSGRN-KTGGTGLGLAISKSIMLAMNGDIGVHSEEGEGSQFWFSLPL 692


>gi|182678896|ref|YP_001833042.1| integral membrane sensor signal transduction histidine kinase
           [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182634779|gb|ACB95553.1| integral membrane sensor signal transduction histidine kinase
           [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 594

 Score =  277 bits (708), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 95/249 (38%), Positives = 152/249 (61%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I+E +Q +     A++ AE+ +  KS FLA +SHE+RTPL AI+GFSEV+K + FG    
Sbjct: 269 ITELEQARVNSDLARRRAEEANLAKSRFLATMSHELRTPLNAILGFSEVMKGELFGAHVI 328

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
             Y +Y+N I  SG  +L ++N++LD+S+IE+G + L  + V+L   V +   L+ L A 
Sbjct: 329 SSYKDYSNDIHASGQHLLTLINEILDLSRIEAGHLELRDDCVALAHVVDDCRHLLALKAK 388

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
           ++ + I      ++PR+ AD R+++Q+ALN+L+NA+ FTP GG I I    T+N    + 
Sbjct: 389 KRGLTIEEHVEPDLPRLRADERALRQVALNLLTNAVKFTPPGGWIKIKIGWTANGGQYVS 448

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           + D+G G+   E+   M  FG+   +Q+   EG+GLGLP+ K +VD + G F + S   +
Sbjct: 449 IHDSGPGIPEEEMPIVMSSFGRGTLAQKNALEGSGLGLPIVKGLVDLHNGTFSLKSRLHE 508

Query: 801 GTLIEIIFP 809
           GT   ++ P
Sbjct: 509 GTEAIVVLP 517


>gi|32472478|ref|NP_865472.1| receptor-like histidine kinase BpdS [Rhodopirellula baltica SH 1]
 gi|32443714|emb|CAD73156.1| receptor-like histidine kinase BpdS [Rhodopirellula baltica SH 1]
          Length = 1998

 Score =  277 bits (708), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 138/671 (20%), Positives = 224/671 (33%), Gaps = 57/671 (8%)

Query: 169  YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS-HLHEIKKGHSSVEKEKYDIFSQ 227
            Y                    +     L + L          + KG     +E++     
Sbjct: 1013 YQATGNIIDVWARSTNGDIPEEIIENELARDLADSQRMSQVLLAKGVREFYQERFAEAVG 1072

Query: 228  QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ-----EDFHTINLNQ 282
                     ++   S T             +  L TS   S   +     E         
Sbjct: 1073 SFSRAIAVAEDTRVSNTYVSPAYPWRCTAMRRQLETSIPRSTQRRWKSIGELGRATRKAV 1132

Query: 283  YTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLF 342
               KQ+   + +  +E   YL+       S    +      E           ++   + 
Sbjct: 1133 AVSKQFTNEIPHAYRERGAYLALAGKLRASQACFQKSLQVAE----AQGAMVAHAKTMIL 1188

Query: 343  YANPSFLLLTKYKSVDDIEIAGGLSTL--------------LDAPKLSDNNAIKPVMLYR 388
            +A  +                G LS L              L     S   + + +    
Sbjct: 1189 FAEYAAEFGWPIDGDAIEHARGTLSELECSDYDVNEGGSLSLVNRFDSLLASGRRIATSV 1248

Query: 389  SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
                      R  T     E    +T    E+ +  P  MP +     +VD        +
Sbjct: 1249 LPEQIYQEVRRAATKILRGEQVFLITRTEDERLSTVPAGMPFDPAIVNEVDRTRQTVVAD 1308

Query: 449  IEVMQLCSILEATSDGIAIINREGII----LSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            +E         A S+GI    ++G      +  N           E          +   
Sbjct: 1309 VE--------NAVSNGI-TTTKQGTFLCSPVDVNDQTLSYLYVSNERFSNLYDDDEIRIA 1359

Query: 505  TP--SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
                S     + +  S    Q L         E            +  S    LT   ++
Sbjct: 1360 DYLTSAAGAAMEKANSFQQLQDLNLNLEKKVHER-------TESVVRHSKELELTAQQLT 1412

Query: 563  EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
              K    KL  AK  AE+ +  KS+FLAR+SHEIRTP+T I+GF+E++         +  
Sbjct: 1413 ATK---EKLQIAKTAAEEANQAKSEFLARMSHEIRTPITGILGFTELLLRGVV--TDDAE 1467

Query: 623  YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
               +   I  +G  +L ++ND+LDISKIE+ K+       +    V + I+ ++  A EK
Sbjct: 1468 RESHLQTIHSNGFHLLHLLNDILDISKIEADKIETERVLCNPSWMVQDVIASLRSKAIEK 1527

Query: 683  RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----V 737
             I +     +  P  I +D   ++QI  N+ SNAI FT  GG + IS +   + E    +
Sbjct: 1528 DISLEIQVDSEFPEEIYSDPTRLRQILTNLTSNAIKFTNQGG-VTISISAIGSGETASKM 1586

Query: 738  ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
             + VRD+G+GMT  +     +PF Q   S      GTGLGL ++K + +A  G   + S 
Sbjct: 1587 KIAVRDSGIGMTQEQTAFIFEPFKQADVSTTREYGGTGLGLSISKRLAEALDGTLEVESE 1646

Query: 798  PAKGTLIEIIF 808
               GT + + F
Sbjct: 1647 RGVGTQMILNF 1657


>gi|294055461|ref|YP_003549119.1| PAS/PAC sensor hybrid histidine kinase [Coraliomargarita
           akajimensis DSM 45221]
 gi|293614794|gb|ADE54949.1| PAS/PAC sensor hybrid histidine kinase [Coraliomargarita
           akajimensis DSM 45221]
          Length = 760

 Score =  277 bits (708), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 92/635 (14%), Positives = 195/635 (30%), Gaps = 73/635 (11%)

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
           L  ++     +      V      +   +     + + +     +E       +      
Sbjct: 20  LVTRYLEQSRMGCDVVRVASLGDGVKLLRKAAFDVVLIDLSLPDSEGVETVRRIASLTSE 79

Query: 260 P----LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS-AY 314
                L  +++ +L  Q          +  +     L  + + S E  +      L    
Sbjct: 80  EVIIVLTGTDDEALALQALKAGAQDYLFKDQLSSEALSRSIRYSMERANLLTRVELHNKE 139

Query: 315 FDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
               E+L     D       + +    + + NP+   L        +            P
Sbjct: 140 TQMREDLLRRIFDANTDAMLILTDECEIRFLNPAAAELLDSTEESLMGEIF--------P 191

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
                +    + +            R   + WN ENS+ +                    
Sbjct: 192 FEVRGDEKAELEIPTGRGATRFVELRAVDLVWNGENSMLVVLH----------------- 234

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
             +  D R  +  +  E  +L   ++  +D +   + EG++   N   S+L G  V D+ 
Sbjct: 235 --DITDFRTAEVALSREKHRLDVTIDGIADAVVATDSEGMVERLNAEASRLLGLAVGDVS 292

Query: 494 R---KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE----KITLGSTKEEKLLSLRIIIK 546
               +     ++    S +      +       + E         +  EE+L+ +R+   
Sbjct: 293 GVNIREVLKLVDPVKRSPVKRVRHLLFESGRAHSAEGLQGFPLSCADGEERLVDIRVRTV 352

Query: 547 KLPFSS-CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
           +       + +   D+++ KQ + +L  A+K+        S     ++H+    LTA++G
Sbjct: 353 QDGDGRHGHVIVFRDVTKLKQHEEELFMAEKM-----QSISQLAGGIAHDFNNMLTAVLG 407

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
              V+     G              +++      +   LL  SK  +       E  ++D
Sbjct: 408 NISVV-RMSLGSEHEEANR--LESAEKAALQARTLTQQLLSFSKGGA----PVIEATTID 460

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725
           + V +    +        +         +  + AD   V Q+  N++ NA    P GG I
Sbjct: 461 QLVEDCAQFL---LRGSNVRCEVEKDAELWAVDADKGQVGQVVNNLIINANQAMPDGGVI 517

Query: 726 IIS-----------TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
            +            T+    + V + V D G G+    L +   P+            G 
Sbjct: 518 RLRLENASVRSNDITSLERGDYVCIAVADEGTGIPAENLNRIFDPYFTTKKD------GN 571

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GLGL    +++  + G   + S   +GT  ++  P
Sbjct: 572 GLGLASCYSIIRNHKGVILVESVVGEGTEFKVYLP 606



 Score = 38.1 bits (87), Expect = 6.1,   Method: Composition-based stats.
 Identities = 12/115 (10%), Positives = 34/115 (29%), Gaps = 9/115 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS---DILHIDPNNHIGDLL-KRQNTWY 144
            D+ G ++ ++ E  + +G     + G+ + +V    D +   P   +  LL +      
Sbjct: 267 TDSEGMVERLNAEASRLLGLAVGDVSGVNIREVLKLVDPVKRSPVKRVRHLLFESGRAHS 326

Query: 145 GKTTL-WPIE-GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG 197
            +    +P+         +D+    +   +          +              
Sbjct: 327 AEGLQGFPLSCADGEERLVDIRVRTVQDGDGRHGHVI---VFRDVTKLKQHEEEL 378


>gi|227524818|ref|ZP_03954867.1| signal transduction histidine kinase [Lactobacillus hilgardii ATCC
           8290]
 gi|227088033|gb|EEI23345.1| signal transduction histidine kinase [Lactobacillus hilgardii ATCC
           8290]
          Length = 462

 Score =  277 bits (708), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 82/402 (20%), Positives = 168/402 (41%), Gaps = 26/402 (6%)

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII 474
             P       P     + +       +   + ++    +L +IL +   GI +I+    +
Sbjct: 80  VAPLFIRPGNPYKQIADQLTELQSRQQDESKTIKNSNTELVTILSSLPVGIMVIDSSQDV 139

Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
           +  N  ++ +       I+ +P +   +      +   +  +      Q  E  ++G   
Sbjct: 140 IFANHKMASMLQRS---IMNQPHSYSQDIRNYQ-LLSLIERVFEDHESQQTEIRSVGDHS 195

Query: 535 EEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
                   ++  +L      S+ M+DIS+    K                + DFL   SH
Sbjct: 196 --STWDTSVVYNQLENDYHISVIMYDISDIINVK--------------QMQIDFLRNASH 239

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           E++TP+TAI GF++ +             +E+   ID+    +  ++ D+L IS I++G 
Sbjct: 240 ELKTPVTAISGFAKTLLGGAMD--DRKTLVEFLKIIDQQSTQLTSLIQDVLTISHIQNGT 297

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714
            + H + + L + V   ++     A  + I +      +   +  D + + +I  N++SN
Sbjct: 298 PH-HSQALELRKFVDTKLTGYSSMAKVRDITLVDEVPQDA-VVSVDSQMLTRILQNLVSN 355

Query: 715 AIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGEG 773
           AI +  SGG + +  +   +    L+V DTG+G+   ++ +  + F +  +S+   +  G
Sbjct: 356 AIKYNRSGGSVTVKYSANDS-FWQLQVVDTGIGIAQKDISRLFERFYRADDSRTKQKVSG 414

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
           TGLGL + K +VD+  G  ++ S    G+   + FP+ D S 
Sbjct: 415 TGLGLAIVKELVDSIGGVIHVKSQRGVGSTFTVEFPINDESQ 456


>gi|149377907|ref|ZP_01895635.1| Signal transduction histidine kinase [Marinobacter algicola DG893]
 gi|149357797|gb|EDM46291.1| Signal transduction histidine kinase [Marinobacter algicola DG893]
          Length = 640

 Score =  277 bits (708), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 111/647 (17%), Positives = 217/647 (33%), Gaps = 38/647 (5%)

Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS 242
           ++   R+      +   +    S     +       + K D  S +     L+    V  
Sbjct: 13  LIWAARLGVLLLVVVVAISLDASSSSSHRNEVRQQWQTKADDISLKLQSSILQNIQTVWG 72

Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302
           L    + + D+       L +   S  PE ++          +  Y       +      
Sbjct: 73  LAANVSIQPDINGQRFRELASVVISLAPELQNIGLAPGFVI-RHIYPLEGNKAALGLDLT 131

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKS----VD 358
               +   + A  D    +    ++           G +     +        S    ++
Sbjct: 132 AQSLSPEQIDALLDSRREVFSGPINLVQGGQ--GLAGRIPIFEQATGEFWGVVSVILDLE 189

Query: 359 DIEIAGGLSTL---LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
            +  + GL  L    +    S ++      ++ S  +    +     I+      +    
Sbjct: 190 KLYSSIGLDRLEDGFNLALSSSSDITDTESVFFSTGSIPWTNPVKSRIRMRGTTWMVFAE 249

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRIN--------KRKMEIEVMQLCSILEATSDGIAI 467
                 +   +     G     +               +      +L  + E    GI +
Sbjct: 250 PAKGWPDHPRQPWIFRGSLFALLAIIAGGVFWLTSLMSRDREMQRRLWGLFELAPMGIGL 309

Query: 468 IN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
            +     +L  N      FG  V+ +      + +     +        +        LE
Sbjct: 310 FSVHSNRLLRANPTFESQFGKSVQSLDFFDQPLDVHGEPLANRPGVQETLREHARISGLE 369

Query: 527 KITLGSTKEE-KLLSLR-IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
              +    +E   + L  + +          L   DISE K+                  
Sbjct: 370 GYYMAPGHDEPSPIMLHGLQLDNYGNEPVVWLITEDISERKKV--------------DHL 415

Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
           K++F++ VSHE+RTPLT+I G   ++ N   G L   +  + A+   R+   +  ++NDL
Sbjct: 416 KNEFISTVSHELRTPLTSISGSLGLLANNAVGELP-EKASKLAHIAYRNSQQLTFLINDL 474

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704
           LD+ K+ +GKM    E   L + V E++  +  +A ++ I ++ S    +  +  D + +
Sbjct: 475 LDMEKLVAGKMPFRSEHYVLQDLVHESVENIATFAQQRDIDLQVSELPAV-TVHVDRQRL 533

Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764
            Q   N+LSNAI F+P+G  + I  +      V L +RD G G+  +  E   + F Q  
Sbjct: 534 NQAITNLLSNAIKFSPAGSSVDIFASQREE-SVRLCIRDHGEGVAPHFREHIFQKFSQAD 592

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
            S +    GTGLGL + + ++    G     S P +G    +  P+ 
Sbjct: 593 ASDRRASGGTGLGLAITRELMTRMDGTVDYESIPGEGATFWLELPVA 639


>gi|149198960|ref|ZP_01876001.1| sensory transduction histidine kinase [Lentisphaera araneosa
           HTCC2155]
 gi|149137955|gb|EDM26367.1| sensory transduction histidine kinase [Lentisphaera araneosa
           HTCC2155]
          Length = 493

 Score =  277 bits (708), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 73/245 (29%), Positives = 131/245 (53%), Gaps = 8/245 (3%)

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           +       A++ AEK +  KS FL+ +SHE+RTPL  ++G+++V++N         +Y  
Sbjct: 153 RRTRDAERAREDAEKANVAKSQFLSNMSHELRTPLNGVLGYTQVLQN---ASDLQDKYKG 209

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
               I   G  +L ++ND+LDISKIE+GK++L ++ V + + VS+   +++  A EK + 
Sbjct: 210 SLKGIMNCGEHLLTVINDILDISKIEAGKLDLVYDEVDVLKVVSDTEDILRYKALEKGLS 269

Query: 686 IRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744
           +  S    IP+ I +D   ++QI +N++ NA+ +T SGG + +    +  + +   + DT
Sbjct: 270 LNHSLDPEIPQSIKSDPTKLRQILVNLVGNAVKYTASGG-VELKLKKS-GDMIKFSIIDT 327

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G+   +     + F Q       +  GTGLGL +   +V+A  G+  + S   KG+  
Sbjct: 328 GIGIPKDKQSHVFEAFRQDEGG--RQEGGTGLGLAICVKLVEAFGGEIGLESEEGKGSTF 385

Query: 805 EIIFP 809
               P
Sbjct: 386 WFTHP 390


>gi|99081069|ref|YP_613223.1| multi-sensor hybrid histidine kinase [Ruegeria sp. TM1040]
 gi|99037349|gb|ABF63961.1| multi-sensor hybrid histidine kinase [Ruegeria sp. TM1040]
          Length = 769

 Score =  277 bits (708), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 109/637 (17%), Positives = 203/637 (31%), Gaps = 78/637 (12%)

Query: 197 GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256
           G            +     + E     I    S          + +       + +  ++
Sbjct: 58  GVSAMILIQTRVRMGARTMASELLTGFIDKDASASFVTDEDGVIHACNTAALKRFEGSES 117

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
           +          + P    F   +  +         +              N   L    D
Sbjct: 118 DTISGTLRSVLANPSAVLFRLQSRAKLEGSAREDIVTRRGNVRIAVHEMANGSFLWRVED 177

Query: 317 EGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
            GE  +  T D  P+P   V   G + + N S   L         E       L  +  +
Sbjct: 178 MGERPSGRTADASPVPMISVGRTGAVLFMNESARSLIG-------ERVKSTDRLFTSLPV 230

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
                   +         ++  AR        +    + F+     +  P          
Sbjct: 231 IPGRINTIMTKSGPVEVLVSEHAR-------GQGRSEIYFMKAVVEDSGPHTG------- 276

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
                                  E+    +  +   G +++ NR   +L G   E+    
Sbjct: 277 ----------------------FESLPVPLLKVRAGGEVMAVNRMAMRLLGI--EEAEGV 312

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555
                +E      MN +L E          E + +    +E  + + +        +   
Sbjct: 313 QLGQLMEGLGRP-MNDWLQETSKGLAPHKSEFLRVSRDDKEVFVQVTLTRIIEDGETLLL 371

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
             ++D +E K  + +   ++K+              V+H+    LTAI G  +++  +  
Sbjct: 372 AVLNDATELKTLEAQFVQSQKM-----QAIGQLAGGVAHDFNNLLTAISGHCDLLLLRHD 426

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
              G+  Y +    I  + N    +V+ LL  S+    K  L  E + + E +S+   L+
Sbjct: 427 Q--GDQDYGDLIQ-IHENANRAAALVSQLLAFSR----KQTLQPEVLDVRETLSDLTHLL 479

Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT--- 732
                EK + +  S    +  I AD R ++Q+ +N++ NA    P GG+I + T      
Sbjct: 480 NRLVGEK-VSLTLSHDPVMRSIRADKRQLEQVLMNLVVNARDAMPHGGEIRVETEVVALD 538

Query: 733 -----------SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
                        E V ++V D G G++  +L+K  +PF          GEGTGLGL  A
Sbjct: 539 TALERDRALVPPGEWVTIQVSDEGTGISPDKLQKVFEPFYTTK----RTGEGTGLGLSTA 594

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
             ++    G  ++ S   +GT   + FP+Y +   HD
Sbjct: 595 YGIIKQTGGFIFVDSVLNQGTKFTLYFPVYRSDASHD 631


>gi|262384753|ref|ZP_06077886.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262293734|gb|EEY81669.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 943

 Score =  277 bits (708), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 74/261 (28%), Positives = 122/261 (46%), Gaps = 9/261 (3%)

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
           ++  +  I    +    +    K AE  +  KS+FL+R+SHEIRTP+  I+G S +    
Sbjct: 527 FTALLLAIGARMKA-TVIQGNLKRAEAANLAKSEFLSRMSHEIRTPMNGIVGMSTIAMQN 585

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
                   +  +    +  S   +L ++ND+LD+SKIESGK+ L  E  +    + +  +
Sbjct: 586 ID---NTDKIKDCLEKVIMSSKHLLALINDVLDMSKIESGKVELRHESFNFRAFLQDFEN 642

Query: 674 LVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
           L    A  K I   T  A+++  +I+ D   + Q+  N+LSNA+ FTP+ G I +  + T
Sbjct: 643 LYGEQAKSKGISYETILASDLEVQIIGDSLRLNQVLSNLLSNALKFTPAKGMIKLRVSKT 702

Query: 733 SNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
           S +     +   V DTG G+     +K  + F Q       +  GTGLGL + K      
Sbjct: 703 SEDQENVYLRFEVIDTGCGIAEENYDKIFESFEQENVDVTYKYGGTGLGLSIVKRFTGLM 762

Query: 789 MGKFYIFSTPAKGTLIEIIFP 809
            G  ++ S    G+   +  P
Sbjct: 763 GGGIHVTSVQGSGSTFTVDLP 783


>gi|288942502|ref|YP_003444742.1| integral membrane sensor hybrid histidine kinase [Allochromatium
           vinosum DSM 180]
 gi|288897874|gb|ADC63710.1| integral membrane sensor hybrid histidine kinase [Allochromatium
           vinosum DSM 180]
          Length = 806

 Score =  277 bits (708), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 88/376 (23%), Positives = 159/376 (42%), Gaps = 28/376 (7%)

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
           G+A I  EG +        +   +    +    F +++ +             L + +  
Sbjct: 250 GLAAIFAEGKLALWKGGQGRQMLWVPMFLTEDGFPLWVGRVVDPSPLDAFRNELIVRVLT 309

Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD--------------------ISE 563
            +  + L      + ++ R+              + D                    ++E
Sbjct: 310 IIAVLVLAVMGLARWIAARVEHFGHELLGGIQRILRDGQPLRFSWTGPRELRELGERLTE 369

Query: 564 WKQEKNKLSH----AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
                 +  +      +  E+ + +KS FLA VSHE+RTPL +I+  S+++  +  G   
Sbjct: 370 LAATHAEHLYAARAHTRELERSNRYKSQFLANVSHELRTPLNSILLLSKMLGAEGNG--L 427

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
           +P     A  I  +G  +  +++++LDIS+IESG++ L+ EPV L   + + I L     
Sbjct: 428 SPTQRRQAQVIHEAGRDLRALIDNILDISRIESGRLGLNPEPVDLRPMLEDLIELFSPQL 487

Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEV 737
            +K + +      + P  I  D   ++QI  N L+NAI FT  G  +I +     S   +
Sbjct: 488 ADKPVELSLRLEPDAPEHIRTDRDKLRQILKNFLANAIKFTECGEVRIEVGGCAESERPL 547

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
           IL V DTG+G+   + E   + F Q   S + R  GTGLGL +++ +     G+  + ST
Sbjct: 548 ILSVIDTGIGIPPDKQEIIFEAFQQADGSTRRRYGGTGLGLAISRELATLLGGRIEVEST 607

Query: 798 PAKGTLIEIIFPLYDT 813
           P  G+   ++ PL   
Sbjct: 608 PGIGSRFSLLLPLSPE 623


>gi|83747753|ref|ZP_00944787.1| Phosphate regulon sensor protein phoR [Ralstonia solanacearum
           UW551]
 gi|207724005|ref|YP_002254403.1| phosphate regulon two-component sensor kinase protein [Ralstonia
           solanacearum MolK2]
 gi|207742915|ref|YP_002259307.1| phosphate regulon two-component sensor kinase protein [Ralstonia
           solanacearum IPO1609]
 gi|83725525|gb|EAP72669.1| Phosphate regulon sensor protein phoR [Ralstonia solanacearum
           UW551]
 gi|206589213|emb|CAQ36175.1| phosphate regulon two-component sensor kinase protein [Ralstonia
           solanacearum MolK2]
 gi|206594310|emb|CAQ61237.1| phosphate regulon two-component sensor kinase protein [Ralstonia
           solanacearum IPO1609]
          Length = 443

 Score =  277 bits (708), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 74/404 (18%), Positives = 161/404 (39%), Gaps = 35/404 (8%)

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDT-----RINKRKMEIEVMQLCSILEATSDGI 465
                +      + P  +   G     +       R    ++E +  +    ++A+ +G+
Sbjct: 52  RLWRVLESPAYGEIPSALGLWGEVYYRLHRLMKGWRTQVLQVEQQHSRFIQAIQASPNGV 111

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
            +++ E  I   N      FG   +  LR+  T  + +        ++  +   +  + L
Sbjct: 112 LMLDGEDQIEWCNAVAEAHFGLSAKRDLRQRITHLIRRP------EFVRYLARGEFEEPL 165

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
               +G  K+  ++S +++           L   DI++ +  +              + +
Sbjct: 166 TMRDMGLHKQ-SIVSAQVLPY---GEDRKLLVSQDITKLENTE--------------AMR 207

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
            DF+A VSHE++TPLT + GF E +++    PL       Y   +      +  +V DLL
Sbjct: 208 RDFVANVSHELKTPLTVLSGFLETVRD---LPLSEDDKKRYLEMMHVQATRMQHLVEDLL 264

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
            ++ +E         PV +   + +     +  ++ +   I  +   ++  +      + 
Sbjct: 265 ALATLEGNPEPPSVTPVPMQRMMLQLQHDAEALSSGRH-AISMTCDPSV-SVCGAELELL 322

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
               N++SNAI +TP+GG+I +  +       +  V DTG+G+ +  + +  + F ++  
Sbjct: 323 SAFSNLVSNAIRYTPAGGRIGLDWSARD-GHAVFSVTDTGIGIASEHIPRLTERFYRVDR 381

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           S+     GTGLGL + K ++  +     + S   +G+     FP
Sbjct: 382 SRSRDTGGTGLGLAIVKHVLSRHGADLQVSSERGQGSTFRASFP 425


>gi|284041424|ref|YP_003391354.1| PAS/PAC sensor signal transduction histidine kinase [Spirosoma
           linguale DSM 74]
 gi|283820717|gb|ADB42555.1| PAS/PAC sensor signal transduction histidine kinase [Spirosoma
           linguale DSM 74]
          Length = 809

 Score =  276 bits (707), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 97/762 (12%), Positives = 222/762 (29%), Gaps = 78/762 (10%)

Query: 109 YAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP--IEGTNLYVPIDLAAL 166
                +G +  D            I  +L  +   +G+  L P    G         +  
Sbjct: 64  KHPTALGQKGPDCWPETWSTIYPLIRQVLDGEEAPWGEDQLIPIYRNGKLENTRWTFSYS 123

Query: 167 PIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK---GHSSVEKEKYD 223
           P+   + + +G                    +  +++F  L +         S      +
Sbjct: 124 PVKDESGKVAGV--LVTCFETTQKVQGFNRLQASEQRFQQLVQKASVGIAVLSGPDLNIE 181

Query: 224 IFSQQSPPPHLRMKNKVSSLT--EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLN 281
           I ++       R  + +      +        L      +  + E        + ++   
Sbjct: 182 IVNEAYAQLVGRRPDSLQGNRFFDVVPEARPDLSPFIEHVKRTGECLYRYDHPYVSVVEG 241

Query: 282 -------QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP-- 332
                    T + Y       S                   +  E      +++ P+   
Sbjct: 242 SKKEGYVNLTVQPYKEPDDTISGIILLCQDVTGQVLSRQDLEASEAKFRTLIEQAPVATC 301

Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
            FV     +  AN S +          I        L           +  V        
Sbjct: 302 LFVGPEMRIDLANESMITFFGQGPS--IVGKPIREVLKRPVDTPAIQLLDNVFTTGKSFD 359

Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
              A A L            ++  P    N   E      +  E     + +++      
Sbjct: 360 AKEAPADLVINGVPGTYYFDISLKPL--RNAAGEIYAVLEMAVEVTQEVLARKQRLESEA 417

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
               + +A    +     +G     N+   +  G   ++     +      +  +  +  
Sbjct: 418 YFRRLTDAVPAIMWETQPDGYCTYLNKQWHETTGQTTDEAQGFGWLDATHPDDKAETSRV 477

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSL----RIIIKKLPFSSCYSLTMHDISEWKQEK 568
              + +   + + + +     ++ +                  +    T+ D+ + +  +
Sbjct: 478 F--LEANQNQASFQALYRLRQRDGQYRWAIDLGSPRFAADGTYAGMIGTVVDVHDQRIAR 535

Query: 569 NKLSHAKKIA-------------------------EKESSHKSDFLARVSHEIRTPLTAI 603
            +L+ ++                            ++ + +   F    SH+++ PL  I
Sbjct: 536 QELAESEARLRTLSTELDLQVQQRTQQLQASIQDLQRSNENLGQFAYVASHDLQEPLRKI 595

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
             F +++K Q    LG    + Y + +  +   +  ++ DLL  S+I + +     + V 
Sbjct: 596 QQFGDLLKEQYAETLGGG--VNYLDRMQAAAYRMSVLIRDLLAYSRISTRQE--ANQAVD 651

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
           L++ V  A+S ++L   E    I      ++P +L D   + Q+ LN+LSNA+ F     
Sbjct: 652 LNKVVEWALSDLELRIAETGAEIEVQ---SLPLVLGDASQLGQLFLNLLSNALKFHRPDT 708

Query: 724 QIIISTTHTSNE----------------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
              I     +                     + V D G+G     +++  + F ++    
Sbjct: 709 VPRIQVRFQTVGAGALPVGITPARAAAAYHQIEVIDNGIGFEGKYIDRIFQVFQRLQG-- 766

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           + + EGTG+GL + + +   + G     S P +G    +  P
Sbjct: 767 KNQYEGTGIGLAICEKVAANHGGAITATSQPGQGATFSVYLP 808



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 50/385 (12%), Positives = 105/385 (27%), Gaps = 28/385 (7%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN--TWYGKT 147
                ++ ++E   + +G     + G R  DV      D +  I  + +       Y   
Sbjct: 175 GPDLNIEIVNEAYAQLVGRRPDSLQGNRFFDVVPEARPDLSPFIEHVKRTGECLYRYDHP 234

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
            +  +EG+     ++L   P    +   SG     +          R   +  + KF  L
Sbjct: 235 YVSVVEGSKKEGYVNLTVQPYKEPDDTISGI--ILLCQDVTGQVLSRQDLEASEAKFRTL 292

Query: 208 HEIKKGH----------SSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257
            E                 +  E    F  Q P    +   +V            +L   
Sbjct: 293 IEQAPVATCLFVGPEMRIDLANESMITFFGQGPSIVGKPIREVLK-RPVDTPAIQLLDNV 351

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD- 316
                + +    P     + +    Y        L+N + E +  L      +       
Sbjct: 352 FTTGKSFDAKEAPADLVINGVPGTYY-FDISLKPLRNAAGEIYAVLEMAVEVTQEVLARK 410

Query: 317 ---EGENLTPETVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
              E E       D  P   +         Y N  +   T   + +  +  G L      
Sbjct: 411 QRLESEAYFRRLTDAVPAIMWETQPDGYCTYLNKQWHETTGQTTDEA-QGFGWLDAT--- 466

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
               D+ A    +   +++   +  A L+ ++           +   +           G
Sbjct: 467 --HPDDKAETSRVFLEANQNQASFQA-LYRLRQRDGQYRWAIDLGSPRFAADGTYAGMIG 523

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSI 457
              +  D RI ++++     +L ++
Sbjct: 524 TVVDVHDQRIARQELAESEARLRTL 548



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 49/150 (32%), Gaps = 6/150 (4%)

Query: 59  QESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRL 118
           QE ++    L+SE  F            W     GY   ++++  +T G    +  G   
Sbjct: 404 QEVLARKQRLESEAYFRRLTDAVPA-IMWETQPDGYCTYLNKQWHETTGQTTDEAQGFGW 462

Query: 119 CDVSDILH-IDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSG 177
            D +      + +    +  + Q ++     L   +G      IDL   P ++ +  ++G
Sbjct: 463 LDATHPDDKAETSRVFLEANQNQASFQALYRLRQRDG-QYRWAIDL-GSPRFAADGTYAG 520

Query: 178 FRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
               G V         R      + +   L
Sbjct: 521 M--IGTVVDVHDQRIARQELAESEARLRTL 548


>gi|298482247|ref|ZP_07000434.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
 gi|298271534|gb|EFI13108.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
          Length = 391

 Score =  276 bits (707), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 98/388 (25%), Positives = 159/388 (40%), Gaps = 31/388 (7%)

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN-------------RAVSKLFGYP 488
              RK+E       ++L+     I +IN +  +L TN             + V  L    
Sbjct: 7   RESRKLERTSHIAGAVLKNVHAFILLINNDFKVLKTNYYQKTGTRKGTEEKRVGDLLQCH 66

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS----LRII 544
                           +  +                LE      T +   +     +   
Sbjct: 67  NALAAEGGCGTHSFCGSCPIRTAIRQAFEQRRNFTDLEATLSVVTSDNTTVECDAVISGS 126

Query: 545 IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
              L       +T+HD++  KQ +N+L  AK+ AEK    KS FLA +SHEIRTPL AI 
Sbjct: 127 YFLLNEEENMVITVHDVTRRKQAENELRLAKEKAEKADISKSAFLANMSHEIRTPLNAIT 186

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           GF+EV+              +Y   I  + +L++ +VND+LD+SKIE+G +      V +
Sbjct: 187 GFAEVL----GSANTEEEKAQYQEIIKMNADLLMQLVNDILDMSKIEAGTLEFVQTTVDV 242

Query: 665 DEAVSEAISLVQLYANE--KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
           +  +S+   L Q+  NE  + I I    + +   I  D   V Q+  N   NAI FT  G
Sbjct: 243 NLLLSDLQQLFQMRVNEAGENIQIIAEPSRSSCMIQTDRNRVAQVLSNFAGNAIKFTHEG 302

Query: 723 GQIIISTTHTSNE-EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
               I   + + + E+   V+DTG G+   +L    + F ++   +    +G GLGL ++
Sbjct: 303 S---IRIGYEARDTELYFYVKDTGAGIPAEKLPDVFERFVKLNKDK----KGAGLGLSIS 355

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           + +V    G+    S   +G+      P
Sbjct: 356 QTIVAKLGGQIGADSVEGEGSTFWFTIP 383


>gi|218780125|ref|YP_002431443.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfatibacillum alkenivorans AK-01]
 gi|218761509|gb|ACL03975.1| PAS/PAC sensor signal transduction histidine kinase, HupT
           [Desulfatibacillum alkenivorans AK-01]
          Length = 558

 Score =  276 bits (707), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 84/552 (15%), Positives = 183/552 (33%), Gaps = 36/552 (6%)

Query: 281 NQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV--YSH 338
                +                   +    +   F +        +D       +   S 
Sbjct: 14  QILRNEIRVAREAAEITAHLVVKQFQETERILRRFQQSNAQRKAVLDAATQIAIIATDSQ 73

Query: 339 GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR------- 391
           G +   N     L  Y++ + I     L    D         ++ +              
Sbjct: 74  GLITVFNTGAENLLGYRAEEIIGKETPLLFHTDDELQETAGTLREICNKPVAGVDIFLET 133

Query: 392 -TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450
                +  R  T   N      +         Q         I  +    +++++     
Sbjct: 134 ARQWPSLQREWTYVRNNGAQFPVEMSINLLREQDYAISGMMFIAMDISAKKMSEQACHES 193

Query: 451 VMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
             +  ++ ++  + I +++ E   IL  N    + + Y  E+++   F    +       
Sbjct: 194 EQKYRALFDSNPNPIFVLDPETLKILDVNPMALEAYEYRREELVGLSFASLGDMKENDEH 253

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN 569
              + +    +  ++L+        +   ++ R    +        LT+ DI+E  ++  
Sbjct: 254 FSMIRKKQYHEGVKSLKVRQFKKGGKPFYVNFRTCPMEYHGREAAILTVDDITEMLEKDA 313

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI--KNQRFGPLGNPRYIEYA 627
            L  A K+         +  A V+HE+  PL AI   +E +    ++   +        A
Sbjct: 314 LLIQAGKMTI-----LGEMSAGVAHELNQPLNAIRVGNEFLKVMAEKDRQIPLDELKLVA 368

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
           + +    +    I+N L    +    K     EPV ++  V+  + ++      + I + 
Sbjct: 369 DEVTAQVDRAAAIINRLKAFGR----KAECEKEPVDINVPVNGVLGMIGSQLALENITVT 424

Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHF---------TPSGGQIIISTTHTSNEEVI 738
                N+P ++A    ++Q+  N+++NA            +P  G I I  ++   + V 
Sbjct: 425 LELEKNLPPVIAHENRMEQVLFNLITNARDAIGDKRDCSMSPYVGNINIR-SYRDGDMVA 483

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           + + DTGVGM+    E+  +PF          G+G GLGL +   ++    G+  + S  
Sbjct: 484 VEITDTGVGMSQDVQERIFEPFFTTK----EVGKGMGLGLSIIYGIIRDYGGRIEVQSKE 539

Query: 799 AKGTLIEIIFPL 810
             G++    FP+
Sbjct: 540 GAGSVFTFFFPV 551



 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/188 (10%), Positives = 46/188 (24%), Gaps = 16/188 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI-------------DPNNHIGD 135
            D+ G +   +      +G  A ++IG     +                    P   +  
Sbjct: 70  TDSQGLITVFNTGAENLLGYRAEEIIGKETPLLFHTDDELQETAGTLREICNKPVAGVDI 129

Query: 136 LLKRQNTWYGKTTLW-PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR 194
            L+    W      W  +       P++++   +  ++   SG     +           
Sbjct: 130 FLETARQWPSLQREWTYVRNNGAQFPVEMSINLLREQDYAISGMMFIAM--DISAKKMSE 187

Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254
                 ++K+  L +       V   +       +P      + +   L          +
Sbjct: 188 QACHESEQKYRALFDSNPNPIFVLDPETLKILDVNPMALEAYEYRREELVGLSFASLGDM 247

Query: 255 KTEKYPLL 262
           K       
Sbjct: 248 KENDEHFS 255


>gi|160888884|ref|ZP_02069887.1| hypothetical protein BACUNI_01304 [Bacteroides uniformis ATCC 8492]
 gi|317479383|ref|ZP_07938517.1| hsp90-like protein [Bacteroides sp. 4_1_36]
 gi|156861783|gb|EDO55214.1| hypothetical protein BACUNI_01304 [Bacteroides uniformis ATCC 8492]
 gi|316904457|gb|EFV26277.1| hsp90-like protein [Bacteroides sp. 4_1_36]
          Length = 446

 Score =  276 bits (707), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 83/381 (21%), Positives = 158/381 (41%), Gaps = 21/381 (5%)

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAI--INREGIILSTNRAVSKLFGYPVEDIL 493
           E       +R++      L SI+      I +   +    +L  NR++ + +G       
Sbjct: 77  EITVREYKEREVRAS-NTLGSIMNNMGVDIYVNSFDSHD-MLYANRSMVEPYGGIEHFWG 134

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK-EEKLLSL-RIIIKKLPFS 551
           +K +       T          ++  +   T           ++    +       +   
Sbjct: 135 KKCWEALYSDKTGECEFCPKRHLIDENGHPTKVYSWDYQRPFDKCWFRVFSAAFAWVDGQ 194

Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
             + +T  DI   K+ + +L  AK  AE     KS FLA +SHEIRTPL +I+GF+ +I 
Sbjct: 195 MAHVITSVDIDHQKKIEEELRVAKDKAEHLDRLKSAFLANMSHEIRTPLNSIVGFASIIA 254

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
                        EY   +  +  L+L +++D+LD++KIE+G ++ +   V + +   + 
Sbjct: 255 ELD----DREERQEYLAIMQENTELLLQLISDILDLAKIEAGTLDYNMGYVDVSDFCKDV 310

Query: 672 ISLVQLYANEKRILIRTSFANNIP--RILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
           +    +   +K + +    A ++P  RI  D + + Q+  N ++NA+ FT  G QI++  
Sbjct: 311 MRNYDIK-EDKAVPVL--LAPDLPDYRIYTDKKRLMQVVTNFINNALKFTSEG-QILLEY 366

Query: 730 T-HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                  ++   V DTG+G+    +      F ++        +GTGLGL + K++++  
Sbjct: 367 HPVEGTGQIEFSVTDTGMGIAPDAVATVFDRFVKLNTF----AKGTGLGLSICKSIIEHL 422

Query: 789 MGKFYIFSTPAKGTLIEIIFP 809
            G     S    G+      P
Sbjct: 423 GGTIGTESELGVGSRFWFRHP 443


>gi|94501038|ref|ZP_01307562.1| probable sensor/response regulator hybrid [Oceanobacter sp. RED65]
 gi|94426785|gb|EAT11769.1| probable sensor/response regulator hybrid [Oceanobacter sp. RED65]
          Length = 640

 Score =  276 bits (707), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 71/245 (28%), Positives = 124/245 (50%), Gaps = 10/245 (4%)

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
             L  A++ +E  +  KS+FLA ++HE+RTP+  ++G  ++++  +          EY +
Sbjct: 247 KDLIRAREASESANKAKSEFLAVMTHELRTPMNGVLGMLQLLQGTQLSK----EQNEYVD 302

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
               SG+ +L ++ND+LD SKIE G+++L  +   L E++          A +K +    
Sbjct: 303 VAINSGDHLLGLINDILDFSKIEQGRIDLDEQYFDLVESLKSLCDSFTPIAQKKGLQFNV 362

Query: 689 SF-ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT--HTSNEEVILR--VRD 743
            F  +    +  D   +KQ+ LN++ NA+ FT +G  I +S       ++EV L   V+D
Sbjct: 363 HFMTHTNLWVKTDQTRLKQVLLNLMGNAVKFTDTGS-INLSLQDLSIEDDEVELSIVVQD 421

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TG G+   +L +    F Q   S   +  GTGLGL ++K +V+   GK  + S   +G+ 
Sbjct: 422 TGKGINQAQLSRIFDAFQQEDASISRQYGGTGLGLAISKQLVEKMGGKLEVQSEKDRGST 481

Query: 804 IEIIF 808
               F
Sbjct: 482 FICRF 486


>gi|258541259|ref|YP_003186692.1| two component hybrid sensor histidine kinase and regulator
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256632337|dbj|BAH98312.1| two component hybrid sensor histidine kinase and regulator
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256635394|dbj|BAI01363.1| two component hybrid sensor histidine kinase and regulator
           [Acetobacter pasteurianus IFO 3283-03]
 gi|256638449|dbj|BAI04411.1| two component hybrid sensor histidine kinase and regulator
           [Acetobacter pasteurianus IFO 3283-07]
 gi|256641503|dbj|BAI07458.1| two component hybrid sensor histidine kinase and regulator
           [Acetobacter pasteurianus IFO 3283-22]
 gi|256644558|dbj|BAI10506.1| two component hybrid sensor histidine kinase and regulator
           [Acetobacter pasteurianus IFO 3283-26]
 gi|256647613|dbj|BAI13554.1| two component hybrid sensor histidine kinase and regulator
           [Acetobacter pasteurianus IFO 3283-32]
 gi|256650666|dbj|BAI16600.1| two component hybrid sensor histidine kinase and regulator
           [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256653657|dbj|BAI19584.1| two component hybrid sensor histidine kinase and regulator
           [Acetobacter pasteurianus IFO 3283-12]
          Length = 1160

 Score =  276 bits (707), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 85/261 (32%), Positives = 145/261 (55%), Gaps = 8/261 (3%)

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
           L M +I   K+   +L  AK+ AE  +  KS F+  VSHEIRTPL +I+G++ +++N+  
Sbjct: 690 LLMKEIRAHKRTDQELKKAKERAEAANLSKSRFMVGVSHEIRTPLNSIMGYAYLLENKML 749

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
            P    +  E    I RS   +  ++  L DISKIE+G++++  + ++  E +     ++
Sbjct: 750 AP---EKQNEGLKVIQRSAEHLSGLIEGLFDISKIEAGRLDILHDKINFQEFLKHLTGML 806

Query: 676 QLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
           +   N K+++       N+P  ++ D R ++QI +N+LSNAI FTPSG    +S +   N
Sbjct: 807 RFQVNNKKLVFIEDIPENLPEYVMTDQRRLRQILINLLSNAIKFTPSGS---VSFSVRWN 863

Query: 735 EEV-ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
            E+    +RDTG+G+ + ++E+  +PF +  +    R +GTGLGL + + +V    G+F 
Sbjct: 864 MEIATFEIRDTGIGIPDSDIERIQEPFQRSSHPDSHRIQGTGLGLTITRLLVQILGGEFT 923

Query: 794 IFSTPAKGTLIEIIFPLYDTS 814
           I ST  +GT   +   L  T 
Sbjct: 924 IKSTVGQGTTCRVRLMLSQTE 944


>gi|254693752|ref|ZP_05155580.1| PAS domain-containing protein [Brucella abortus bv. 3 str. Tulya]
          Length = 898

 Score =  276 bits (707), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 99/626 (15%), Positives = 208/626 (33%), Gaps = 51/626 (8%)

Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271
           +G      + Y   +  +    +R  ++V +     +     L       L+++E     
Sbjct: 145 RGQIVYANQAYARMTGATDADGIRPLDQVLASEPAASDAIYRLTNAVRDGLSAQEELRIS 204

Query: 272 QEDFHTINLNQY--TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE-----NLTPE 324
                  N +      +     L+  ++     ++ +         ++            
Sbjct: 205 GGLSRGANGSLAPVWYRIKARALEGGAEFKGPLVAWQVADISEERAEQERFFQELQEAIN 264

Query: 325 TVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
            +D  P  FF     G + Y N +               +  L+ ++    ++       
Sbjct: 265 HLDHAPAGFFSANPAGRIIYLNATLAEWLGVDLTQFTPGSLTLNDIVAGSGMA------L 318

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
           +   +++      +     +      SLA+ F    +  +         I  +  +   +
Sbjct: 319 IKAVKAEPGTSRNTVIDLDLIKRNGQSLAVRFYHRVQTARDGMPGTTRTIVLDRAEGDDS 378

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG--YPVEDILRKPFTVFL 501
                   ++      +    IA ++ EG  L TN     +F      + I R+     +
Sbjct: 379 SVAQRSAEVRFTRFFNSAPMAIAAVDAEGHTLRTNARFLDIFSGVVDRDAIDRRVKLENV 438

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF----SSCYSLT 557
                    +                 T+    EE+ +   +                ++
Sbjct: 439 VHERDRETFNKALAAAFAGQASISPVDTVLPGNEERHIRFYMSPVTDLGGEAAEEAAVIS 498

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
             + +E K  +N+++ ++K+              ++H+    LTAII  S+++       
Sbjct: 499 AVETTEQKALENQMAQSQKM-----QAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNH--R 551

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
             +P + +  N I ++ N    +V  LL  S+    +  L  E + L + +++ + ++  
Sbjct: 552 ASDPSFPDIMN-IKQNANRAASLVRQLLAFSR----RQTLRPEVLDLTDVLAD-LRMLLA 605

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT------- 730
               K I ++     ++  + ADL   +Q+A+N+  NA    P GGQI + T        
Sbjct: 606 RLVGKDIELKIDHGRDLWPVKADLGQFEQVAVNLAVNARDAMPEGGQITLRTRNIPAADA 665

Query: 731 -------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
                      + V+  V DTG G+    LEK  +PF          G+GTGLGL +   
Sbjct: 666 AKLHYRDLPEADYVVFEVEDTGTGIPADVLEKIFEPFFTTK----EVGKGTGLGLSMVYG 721

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFP 809
           ++    G  Y  S   KGT  +I  P
Sbjct: 722 IIKQTGGFIYCDSEVGKGTTFKIFLP 747



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/240 (11%), Positives = 71/240 (29%), Gaps = 11/240 (4%)

Query: 319 ENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
           ++L    +D  P    +    G + YAN ++  +T     D I     +     A + + 
Sbjct: 125 QDLAHSFMDTQPEGTVISDPRGQIVYANQAYARMTGATDADGIRPLDQV----LASEPAA 180

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNR--ENSLAMTFIPFEKANQFPENMPQNGIEP 435
           ++AI  +     D        R+          +   + +    +A +         +  
Sbjct: 181 SDAIYRLTNAVRDGLSAQEELRISGGLSRGANGSLAPVWYRIKARALEGGAEFKGPLVAW 240

Query: 436 EDVDTRINKRKMEIEVMQLC-SI--LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
           +  D    + + E    +L  +I  L+    G    N  G I+  N  +++  G  +   
Sbjct: 241 QVADISEERAEQERFFQELQEAINHLDHAPAGFFSANPAGRIIYLNATLAEWLGVDLTQF 300

Query: 493 LRKPFT-VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
                T   +   +   +   +           ++   +    +   +     ++     
Sbjct: 301 TPGSLTLNDIVAGSGMALIKAVKAEPGTSRNTVIDLDLIKRNGQSLAVRFYHRVQTARDG 360



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 47/420 (11%), Positives = 103/420 (24%), Gaps = 38/420 (9%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD--ILHIDPNNHIGDLLKRQNTWYGKT 147
           D  G +   ++   +  G      I   L  V        D    + + ++   +   + 
Sbjct: 143 DPRGQIVYANQAYARMTGATDADGI-RPLDQVLASEPAASDAIYRLTNAVRDGLSAQEEL 201

Query: 148 TL-----WPIEGTNLYVPIDLAALPIYSRNREFSG-FRGFGIVHVNRVDNDPRALGKRLD 201
            +         G+   V   + A  +     EF G    + +  ++    +     + L 
Sbjct: 202 RISGGLSRGANGSLAPVWYRIKARALEGGA-EFKGPLVAWQVADISEERAEQERFFQELQ 260

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR------MKNKVSSLTEYYAHKDDVLK 255
           +  +HL     G  S       I+   +    L           ++           ++K
Sbjct: 261 EAINHLDHAPAGFFSANPAGRIIYLNATLAEWLGVDLTQFTPGSLTLNDIVAGSGMALIK 320

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN--NSKESFEYLSHRNHPSLSA 313
             K    TS  + +                     T ++          L        S 
Sbjct: 321 AVKAEPGTSRNTVIDLDLIKRNGQSLAVRFYHRVQTARDGMPGTTRTIVLDRAEGDDSSV 380

Query: 314 YFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLT-KYKSVDDIEIAGGLSTLLD 371
                E       +  P+    V + G+    N  FL +       D I+    L  +  
Sbjct: 381 AQRSAEVRFTRFFNSAPMAIAAVDAEGHTLRTNARFLDIFSGVVDRDAIDRRVKLENV-V 439

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
             +  +         +    +       L     N E  +     P              
Sbjct: 440 HERDRETFNKALAAAFAGQASISPVDTVL---PGNEERHIRFYMSPVTDLGGEAAEEAAV 496

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSI----------LEATSDGIAIINREGIILSTNRAV 481
               E  + +  + +M  +  ++ ++                 I + +    +L TN   
Sbjct: 497 ISAVETTEQKALENQM-AQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSD---LLLTNHRA 552



 Score = 48.5 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 45/134 (33%), Gaps = 12/134 (8%)

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY-LT 514
           S ++   +G  I +  G I+  N+A +++ G    D   +P    L     +    Y LT
Sbjct: 130 SFMDTQPEGTVISDPRGQIVYANQAYARMTGATDAD-GIRPLDQVLASEPAASDAIYRLT 188

Query: 515 EILSLDLRQTLEKITLG---STKEEKLLSLRIIIKKLPFSSC-------YSLTMHDISEW 564
             +   L    E    G         L  +   IK               +  + DISE 
Sbjct: 189 NAVRDGLSAQEELRISGGLSRGANGSLAPVWYRIKARALEGGAEFKGPLVAWQVADISEE 248

Query: 565 KQEKNKLSHAKKIA 578
           + E+ +     + A
Sbjct: 249 RAEQERFFQELQEA 262


>gi|213971910|ref|ZP_03400010.1| sensor histidine kinase/response regulator GacS [Pseudomonas
           syringae pv. tomato T1]
 gi|301384480|ref|ZP_07232898.1| sensor histidine kinase/response regulator GacS [Pseudomonas
           syringae pv. tomato Max13]
 gi|302060514|ref|ZP_07252055.1| sensor histidine kinase/response regulator GacS [Pseudomonas
           syringae pv. tomato K40]
 gi|302132002|ref|ZP_07257992.1| sensor histidine kinase/response regulator GacS [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|213923335|gb|EEB56930.1| sensor histidine kinase/response regulator GacS [Pseudomonas
           syringae pv. tomato T1]
          Length = 917

 Score =  276 bits (707), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 76/243 (31%), Positives = 139/243 (57%), Gaps = 8/243 (3%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  A+K A + S  KS+FLA +SHEIRTPL  I+GF+ +++     P    R  +Y   
Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSELTP----RQFDYLAT 325

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I++S + +L I+N++LD SKIE+GK+ L   P +L + + + ++++   A+ K + + + 
Sbjct: 326 IEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKHLELVSL 385

Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQI---IISTTHTSNEEVILRVRDTG 745
              + P  +  D   ++QI  N++SNAI FT  G  +   ++      + ++ + V+DTG
Sbjct: 386 VYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAMLEDETEEHAQLRISVQDTG 445

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+++ ++    + F Q  NS   +  GTGLGL ++K +++   G+  + STP +G+   
Sbjct: 446 IGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFW 505

Query: 806 IIF 808
           I  
Sbjct: 506 ISL 508


>gi|239616420|ref|YP_002939742.1| multi-sensor signal transduction histidine kinase [Kosmotoga
           olearia TBF 19.5.1]
 gi|239505251|gb|ACR78738.1| multi-sensor signal transduction histidine kinase [Kosmotoga
           olearia TBF 19.5.1]
          Length = 899

 Score =  276 bits (707), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 86/378 (22%), Positives = 153/378 (40%), Gaps = 27/378 (7%)

Query: 436 EDVDTRINKRKMEIEVMQL-CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
           E   +   +R +         +IL++    I + +R+G I   NR   +LFG   E  L 
Sbjct: 530 EMTRSLERERNLSDYYRNFVSNILQSLESSIIVCDRDGKITEMNRRAEELFGLSREKCLG 589

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK---KLPFS 551
            P       +  S ++  + E+L +    TL          +++  +RI      +    
Sbjct: 590 VPLKTV--CDQLSELHSLIAEVLKVGETVTLS-DHRLEDFNDRIFDIRITPLVNKRSEEI 646

Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
               L++ D++E    + +L   +K+A        +  A+V+HEIR P+T I GF+  I 
Sbjct: 647 IGIILSLDDVTERFNLEKELRFREKMA-----ALGEMSAKVAHEIRNPITIISGFTRRIA 701

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
             R       +  +Y   ++R    +  IVND+LD S+    K   + E V+  E   E 
Sbjct: 702 RTR----DREKIQQYVEILNRELERLETIVNDVLDYSR--RAKKKENIESVNALELCQEI 755

Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
            +  +  A +K I +          +  +   +KQ+ +N++ NAI  +   G + I    
Sbjct: 756 ANGFKDLAKKKGISLIVEGDEETVFV-GNKNRMKQVIINLVQNAIEASEDNGIVKIEVEF 814

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
                V + V + G  +    L +  +PF            GTGLGL + K +V+ + G 
Sbjct: 815 AQEN-VRISVWNKGKEIPPEILRRVFEPFFTTKTF------GTGLGLSICKRIVEEHGGN 867

Query: 792 FYIFSTPAKGTLIEIIFP 809
               S    GT+  +  P
Sbjct: 868 ITAQSDSN-GTIFVVSLP 884


>gi|115379534|ref|ZP_01466626.1| sensory box histidine kinase/response regulator [Stigmatella
           aurantiaca DW4/3-1]
 gi|115363462|gb|EAU62605.1| sensory box histidine kinase/response regulator [Stigmatella
           aurantiaca DW4/3-1]
          Length = 603

 Score =  276 bits (707), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 82/282 (29%), Positives = 142/282 (50%), Gaps = 12/282 (4%)

Query: 533 TKEEKLLSLRIIIKKLPFSSCYSLTMH----DISEWKQEKNKLSHAKKIAEKESSHKSDF 588
            K+ + + + +   +   +S  +L       DI++ +  + +L  A+K AE+ +  K+DF
Sbjct: 19  RKDGQRVPVLLNTVQKKDASGKTLFHRTTLFDITDRRNYERELVLARKRAEEATRAKADF 78

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
           L+ +SHEIRTP+ AIIG S ++      PL    Y EYA  +  S   +L ++N +LD +
Sbjct: 79  LSMMSHEIRTPMNAIIGLSNLLGQATLPPL----YQEYARILQSSSENLLVLLNSILDFN 134

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQI 707
           K+E+GK+ L      L + +    S + + A EK++ IR  F   +P  +L D   + Q+
Sbjct: 135 KMEAGKLMLEERRFDLRQLLHGLCSTLSVKAEEKKLSIRVEFDPEVPNALLGDPVKLGQV 194

Query: 708 ALNILSNAIHFTPSGG-QIIISTTHTSNEEVI--LRVRDTGVGMTNYELEKAMKPFGQIP 764
             N+L NAI FT  G   + +   H   E V    +V DTG+G+   +L +  + F Q  
Sbjct: 195 LTNLLGNAIKFTEQGAVTLAVRRLHGDAEGVFLGFKVSDTGMGIPQDQLTQIFEAFTQAS 254

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
                +  G+GLGL + + ++  +  K  + S P +G+    
Sbjct: 255 YDITWKHGGSGLGLAICQKLLALHGSKMRVESVPGEGSSFAF 296


>gi|83815506|ref|YP_446611.1| sensor/response regulator hybrid protein, putative [Salinibacter
           ruber DSM 13855]
 gi|83756900|gb|ABC45013.1| probable sensor/response regulator hybrid protein, putative
           [Salinibacter ruber DSM 13855]
          Length = 624

 Score =  276 bits (707), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 104/417 (24%), Positives = 166/417 (39%), Gaps = 14/417 (3%)

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG 472
              I         E      +       R   R +  +   L  ++E +   +  ++  G
Sbjct: 188 WALIGAMGVVALVEGATLRWVRSVCARLRTQGRTLREQRDLLDRLVETSPHAVVRVDASG 247

Query: 473 IILSTNRAVSKLFGYPVEDILRKPF------TVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
                N    ++ G  VE             +   E+ TP         +    + + L+
Sbjct: 248 APTGANGRAEEILGPDVEAASGDSDGATTGGSAGDEETTPPGTRPLSQVLQVRRVVRNLK 307

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH--DISEWKQEKNKLSHAKKIAEKESSH 584
                     ++LS      +    +      H  D++E ++ K  L  A++  E+    
Sbjct: 308 CSVERPDGTRRVLSASGAPVRGADGTIREAVFHLEDVTEQERRKQALRRAEEEIEEADRL 367

Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR--YIEYANYIDRSGNLVLDIVN 642
           KS  LA ++HEIRTPLTAIIGF+E I                 YA+ I++SG  +LD   
Sbjct: 368 KSALLANMNHEIRTPLTAIIGFAEAIGTTASEMDLPEHTPLTGYADLIEQSGKRLLDTFE 427

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702
           D+LD+S++E+G+M L  E V L E    A+      A +K I +R           A+  
Sbjct: 428 DILDLSQLEAGQMELGIETVDLAEQARRAVQECGANAQDKEIDVR--LEATSVSARANEN 485

Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
            V+    N+L NAI +T  GG + + T        +L V D G GM    +++  +PF Q
Sbjct: 486 GVQVALQNLLDNAIKYTADGGTVWVRTRPEP-GRAVLEVEDDGAGMEPETVDQLFEPFRQ 544

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819
                    EG G+GL + K   +   G   + + P  G+   I FP+ D S  HDC
Sbjct: 545 ASTGMAREYEGAGVGLAVTKEATEQMGGAIEVETEPGAGSRFLIRFPMADHST-HDC 600



 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/335 (8%), Positives = 72/335 (21%), Gaps = 18/335 (5%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN------NHIGDLLKRQN 141
            +DA G     +    + +G       G      +     D          +  +L+ + 
Sbjct: 242 RVDASGAPTGANGRAEEILGPDVEAASGDSDGATTGGSAGDEETTPPGTRPLSQVLQVRR 301

Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
                            V +  +  P+   +           +         +   +R +
Sbjct: 302 VVRNLKCSVERPDGTRRV-LSASGAPVRGADGTIR--EAVFHLEDVTEQERRKQALRRAE 358

Query: 202 KKFSHLHEIKKGHSSVEKEKYD-----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256
           ++      +K    +    +       I            +  +   T    + D + ++
Sbjct: 359 EEIEEADRLKSALLANMNHEIRTPLTAIIGFAEAIGTTASEMDLPEHTPLTGYADLIEQS 418

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA--- 313
            K  L T E+     Q +   + L   T        +   +             L A   
Sbjct: 419 GKRLLDTFEDILDLSQLEAGQMELGIETVDLAEQARRAVQECGANAQDKEIDVRLEATSV 478

Query: 314 YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
                EN     +         Y+         +         ++  +   G+       
Sbjct: 479 SARANENGVQVALQNLLDNAIKYTADGGTVWVRTRPE-PGRAVLEVEDDGAGMEPETVDQ 537

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
                      M    +   +  +      +    
Sbjct: 538 LFEPFRQASTGMAREYEGAGVGLAVTKEATEQMGG 572


>gi|88813512|ref|ZP_01128746.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal:Hpt
           [Nitrococcus mobilis Nb-231]
 gi|88789225|gb|EAR20358.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal:Hpt
           [Nitrococcus mobilis Nb-231]
          Length = 715

 Score =  276 bits (707), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 78/252 (30%), Positives = 128/252 (50%), Gaps = 10/252 (3%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I + K+   +L HAK+ A+  S  K +FLA +SHEIRTP+ AIIG +E++ +        
Sbjct: 40  IQDLKKAGEELRHAKEAAQAASVAKGNFLANMSHEIRTPMNAIIGMTELVLDTDL----T 95

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
               EY   +  +GN +L ++ND+LD SKIE+GK+ L      L E + +A+  +   A+
Sbjct: 96  DTQREYLAMVREAGNSLLSLLNDILDFSKIEAGKLELESHVFGLRERLGDAMKSLAFRAH 155

Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT----SNE 735
            K I +       +P  +L D   ++QI +N++ NAI FT  G ++++   +     +  
Sbjct: 156 GKGIELACHVHPEVPDALLGDASRLRQIVVNLVGNAIKFTTQG-EVVLDVAYESPTNNAA 214

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            +   V DTG+G+   +LE     F Q   S   +  GTGLGL ++  +V    G+ +  
Sbjct: 215 NLHFTVTDTGIGIPTDKLESIFDSFEQADMSTTRQFGGTGLGLAISSRLVKLMGGRIWAE 274

Query: 796 STPAKGTLIEII 807
           S    G+     
Sbjct: 275 SELGCGSDFHFT 286


>gi|261251965|ref|ZP_05944539.1| putative histidine kinase [Vibrio orientalis CIP 102891]
 gi|260938838|gb|EEX94826.1| putative histidine kinase [Vibrio orientalis CIP 102891]
          Length = 886

 Score =  276 bits (707), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 85/268 (31%), Positives = 141/268 (52%), Gaps = 19/268 (7%)

Query: 563 EWKQEKNKLSHAKKIAEKES-------SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
           E +Q + +L+ AK+ AEK           KS FLA +SHEIRTPL  +IG +EV+ +   
Sbjct: 362 ERQQAQERLTQAKEDAEKAKDAAVMACKAKSSFLANMSHEIRTPLNGVIGITEVLSDTDL 421

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
               NP   +Y   I+ S  L+L ++ND+LD SKIESG + +      + E++ +  S+V
Sbjct: 422 ----NPSQKDYVETIETSSQLLLSLINDVLDFSKIESGMLLVSPHSTCVRESIYDIASIV 477

Query: 676 QLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
              A EK I +  S ++  P R++ D   ++Q+ +N +SNA+ FT SG  + +  +    
Sbjct: 478 APQAKEKGIDLHVSISSETPYRVIVDDHRLRQVLMNFMSNAVKFTNSG-VVSLQLSSKHV 536

Query: 735 EE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
            E    +   V+DTGVG+   + +K  +PF Q  +S   +  GTGLGL ++  +V+    
Sbjct: 537 GENIIEMTFAVQDTGVGIDEQQQKKIFEPFSQEDDSTTRKFGGTGLGLAISTQLVELMGS 596

Query: 791 KFYIFSTPAKGTL--IEIIFPLYDTSHP 816
           +  + S   +G+     +  P+    +P
Sbjct: 597 QIELTSIKGEGSRFYFTLTLPIDVYHYP 624


>gi|150025096|ref|YP_001295922.1| two-component system sensor histidine kinase [Flavobacterium
           psychrophilum JIP02/86]
 gi|149771637|emb|CAL43111.1| Probable two-component system sensor histidine kinase
           [Flavobacterium psychrophilum JIP02/86]
          Length = 870

 Score =  276 bits (707), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 132/750 (17%), Positives = 249/750 (33%), Gaps = 74/750 (9%)

Query: 78  PIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM---IGMRLCDVSDILHIDPNNHIG 134
           P          ID  G L + +    K       ++   I      +   +  +    I 
Sbjct: 173 PTQNPDPII-RIDTKGNLLKRNPAAEKLSSFIYDEINYKIEDFFKFIITKIDPEKERWIF 231

Query: 135 DLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR 194
           ++   Q  +         +            + IY                         
Sbjct: 232 EIQNDQKYYSFVCISLKEDN----------YINIYG--------------RDITQQKKTE 267

Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254
               RL    S +    +           IF   +    L   ++   + +         
Sbjct: 268 EESNRL----SLVASANQNGVVFTNPNGIIFWCNNAYLKLTGFSREEVIGKTPIEIGKTN 323

Query: 255 KTEKYPLLTSEES-----SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
            T K  L    E                 + + +  K     + N+  E  +Y +     
Sbjct: 324 HTNKSDLKKMIEPFYKGIPFDIDLIHARKDGSSFWSKNKGQPILNSKGEVIQYFAMIEDI 383

Query: 310 SLSAYFDEGEN----LTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364
           SL   +DE            +    +    V  +  +  AN SFL ++ Y S + I    
Sbjct: 384 SLKKRYDESLQNEKEKYRSIIANMNLGLLEVDLNDVITLANNSFLTISGYSSEELIGKKA 443

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
               L    K    +  +     R      +   ++  I    +N   +        N  
Sbjct: 444 AELLLTQESKKLVKSKNEI----RKKGKTDSYEVKV--IDKFGKNRHWL-ISGAPNYNAM 496

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
            E +   GI  +    +  + K+ +    L  I E   + + I N EG I   N++  ++
Sbjct: 497 GELIGTIGIHLDITLQKEQEEKLYL----LSLIAEKNINSVIIANPEGKIEWANKSFIEI 552

Query: 485 FGYPVEDILRKPFTVFLEQ-NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
            GY +E+++ K     L+   T      YL + +   L        +  +K+ K   + I
Sbjct: 553 SGYTIEELIGKRPGNLLQGKETNPETIIYLRDQIKKGLP--FNCEIINYSKQGKKYWINI 610

Query: 544 IIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
             + L         +     +I++ K+ + K     K   K +    D+ + VSH++++P
Sbjct: 611 QGQALYNKKGQIVKFFAIEENITKKKELEEKQDFLVKSLAKSNKELEDYASIVSHDLKSP 670

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L +I      IK      L N + ++Y + I+     +  ++  +L  +KI+  K+NL  
Sbjct: 671 LRSIHSLISWIKEDNDNQL-NDQTLQYLSLIEGKVEKMDYLIEGILTYAKID--KINLAS 727

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719
           E V+     +  I    +        I  S    +P I AD   ++Q+  NI+SNA+++ 
Sbjct: 728 EKVN-----THEIIENIINIIHIPNHINVSIIGKLPIINADKFRIQQLFQNIISNAVNYI 782

Query: 720 PSG-GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
               G + +S     + + I  ++D G G+     EK  K F  +  S +     TGLGL
Sbjct: 783 DKPIGTVNVSC-IEKDGKYIFSIQDNGPGIAKENQEKIFKIFQSLQKSDKS----TGLGL 837

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            + K +++   GK ++ S    GT   I  
Sbjct: 838 SIVKKIIETYNGKIWLESQINHGTTFFISL 867


>gi|47231510|gb|AAT12782.1| PhoR [Alcaligenes faecalis]
          Length = 432

 Score =  276 bits (707), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 75/375 (20%), Positives = 148/375 (39%), Gaps = 30/375 (8%)

Query: 438 VDTRINKRKMEIEVMQLCSIL---EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
              R ++++++     +  I+   EA  DG   +N +  +   N+   +  G  +     
Sbjct: 76  RQLRRDRQEIQDLNRYVDGIMMAAEALPDGAITLNGDMELQWCNQTACEHIGLNLATDRH 135

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554
                 L +   S               Q    + L  +K+ +  SL + +        +
Sbjct: 136 HSIFNILREPEFSRYA---------RQPQWDGPLLLHLSKDGRERSLLLQLTPYGLGQ-F 185

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
            +   D+++ +  +                + DF+A VSHE+RTPLT ++GF E +++  
Sbjct: 186 LIVTRDVTQVEMLETT--------------RKDFVANVSHELRTPLTVLLGFLETLQDMP 231

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
              L   +   Y   +      +  IV DLL +S +ES    +  E V + + +  A+  
Sbjct: 232 PESLPLEQRQRYEQMMLEQTRHMQSIVADLLTLSTLESS-PTVEGETVQVSQLIESALKQ 290

Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
            +  +  +     T     I  I      +     N+++NA+ +TP  G I +      N
Sbjct: 291 GEAISGGQH-SFVTDLDPRI-AIQGMETELSSAVSNLITNAVRYTPKDGTITVRWYLNDN 348

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
            E    V+DTG+G+   ++ +  + F ++   +     GTGLGL + K ++  +     I
Sbjct: 349 GEACYSVQDTGIGIAAQDIPRLTERFYRVDKGRSRSTGGTGLGLAITKHIIVRHNADLQI 408

Query: 795 FSTPAKGTLIEIIFP 809
            S    G++  + FP
Sbjct: 409 QSRLGVGSVFMLRFP 423


>gi|83310363|ref|YP_420627.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82945204|dbj|BAE50068.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 685

 Score =  276 bits (707), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 75/416 (18%), Positives = 152/416 (36%), Gaps = 22/416 (5%)

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
            W RE +  +              +        +   +    + + E      IL A  +
Sbjct: 281 PWRRETATLVAIAGLVTLAIGLLALILIRAMKAEEKAQKATERAKREAE---LILAAAGE 337

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM-----NHYLTEILS 518
           GI  I+ +G +   N A   + G+  ED + +        + P           +   L+
Sbjct: 338 GICGIDIQGRVTFMNPAARSMLGWLHEDPIGRNLHAANHHSRPDGAAYPGSECPIAHTLA 397

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY---SLTMHDISEWKQEKNKLSHAK 575
               + ++  T           + +I   L          L   DIS+    +  L    
Sbjct: 398 DGQTREVQGETFWRL-NGTQFPVEMIATGLVEDGGVKGAVLMFRDISDRLASEQALKAQA 456

Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
               + ++    F    SH++R PL  +  F   +  +R+GP  +    +Y  Y      
Sbjct: 457 TELSRSNADLEQFAYVASHDLREPLRQVASFV-SLLERRYGPTLDDDARDYITYAREGAK 515

Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNI 694
            +  ++ DLLD S+I  G  +   + V+L   + EAI+ +     E    +  +     +
Sbjct: 516 RMDRLIIDLLDFSRI--GHHSQAVQQVNLGSVIDEAIANLGTVIVEHGAQVDRAAEMPVL 573

Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT-HTSNEEVILRVRDTGVGMTNYEL 753
             +  D+  + Q   N++ NA+ +       I+       +E  ++ V D G+G+     
Sbjct: 574 GLVRDDMVRLFQ---NLIGNALKYHHPERTPIVRIAARRDDEGWVVSVIDNGLGIDPQFS 630

Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           E+    F ++    + + EGTG+GL + K +V+   G+ ++      G++  +  P
Sbjct: 631 ERIFGIFQRLH--TRDKFEGTGIGLAICKKIVERAGGRIWVEPAEGGGSVFNVRLP 684



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/336 (9%), Positives = 71/336 (21%), Gaps = 20/336 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN------HIGDLLKRQNT 142
           ID  G +  ++      +G      IG  L   +     D          I   L    T
Sbjct: 342 IDIQGRVTFMNPAARSMLGWLHEDPIGRNLHAANHHSRPDGAAYPGSECPIAHTLADGQT 401

Query: 143 --WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
               G+T  W + GT   V +    L     +    G     +              K  
Sbjct: 402 REVQGET-FWRLNGTQFPVEMIATGLV---EDGGVKGA--VLMFRDISDRLASEQALKAQ 455

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
             + S  +   +  + V         +Q       ++ +     +  A        E   
Sbjct: 456 ATELSRSNADLEQFAYVASHDLREPLRQVASFVSLLERRYGPTLDDDARDYITYAREGAK 515

Query: 261 LLTSEESSLPEQEDFHT---INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
            +      L +                       + N      E+ +  +  +       
Sbjct: 516 RMDRLIIDLLDFSRIGHHSQAVQQVNLGSVIDEAIANLGTVIVEHGAQVDRAAEMPVLGL 575

Query: 318 GENLTPETVDKC-PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
             +                +          +     +   V  I+   G+          
Sbjct: 576 VRDDMVRLFQNLIGNALKYHHPERTPIVRIAARRDDEGWVVSVIDNGLGIDPQFSERIFG 635

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
                +     + + T I  +     ++        
Sbjct: 636 --IFQRLHTRDKFEGTGIGLAICKKIVERAGGRIWV 669



 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 47/494 (9%), Positives = 118/494 (23%), Gaps = 57/494 (11%)

Query: 77  DPIPRTVRFTWNIDAHGYLKEISEELPKTI------GNYAFKMIG-MRLCDVSDILHIDP 129
            P      F   +D    L+++S+ +          G +     G   L DVSD  +   
Sbjct: 81  SPGGNPA-FITLVD---RLRQMSDGMLDIRMVTSTGGLHYIPWRGPKPLADVSDRDYF-- 134

Query: 130 NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRV 189
                  ++ +  + G   +  + G    +P+ + A     RN        FG + ++R+
Sbjct: 135 --KAQARMETRGFYIGNPVVSRVTG-KWGIPVSIPA----DRNGG-DIAVLFGAIELDRI 186

Query: 190 DNDPRA---------LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV 240
                A            R D  F      +   + +       F          +    
Sbjct: 187 VKTFEAERIKPHGSIAVLRADGTFLFRVPSEDHVAGLNIADTPSFRDNYALSLKGVFRSS 246

Query: 241 SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF 300
           S   +         +   YPL+    + + +                   TL        
Sbjct: 247 SQFIDGKERLVSYQRLRDYPLIVIVTAGIDDLLAPWRRETATLVAIAGLVTLAIGLLALI 306

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDD 359
              + +         +  +      +         +   G + + NP+   +  +   D 
Sbjct: 307 LIRAMKAEEKAQKATERAKREAELILAAAGEGICGIDIQGRVTFMNPAARSMLGWLHEDP 366

Query: 360 IEIAGGLSTLLDAPK----------------LSDNNAIKPVMLYRSDRTCIAASARLHTI 403
           I      +     P                       ++    +R + T          +
Sbjct: 367 IGRNLHAANHHSRPDGAAYPGSECPIAHTLADGQTREVQGETFWRLNGTQFPVEMIATGL 426

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
             +     A+            E   +             ++   +    L   L   + 
Sbjct: 427 VEDGGVKGAVLMFRDISDRLASEQALKAQATELSRSNADLEQFAYVASHDLREPLRQVAS 486

Query: 464 GIAII----------NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
            ++++          +    I        ++    ++ +         +      +   +
Sbjct: 487 FVSLLERRYGPTLDDDARDYITYAREGAKRMDRLIIDLLDFSRIGHHSQAVQQVNLGSVI 546

Query: 514 TEILSLDLRQTLEK 527
            E ++      +E 
Sbjct: 547 DEAIANLGTVIVEH 560


>gi|15604100|ref|NP_220615.1| histidine kinase sensor protein (barA) [Rickettsia prowazekii str.
           Madrid E]
 gi|3860792|emb|CAA14692.1| HISTIDINE KINASE SENSOR PROTEIN (barA) [Rickettsia prowazekii]
 gi|292571826|gb|ADE29741.1| Histidine kinase sensor protein [Rickettsia prowazekii Rp22]
          Length = 497

 Score =  276 bits (707), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 88/249 (35%), Positives = 139/249 (55%), Gaps = 5/249 (2%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I E  +    L    +  EK SS  + F A +SHE+RTPL AIIGFSE++ ++R      
Sbjct: 245 IEEQLETNRNLKAQIEKVEKTSSSNTKFFANISHELRTPLNAIIGFSEILMSER----DT 300

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
            +   Y   I  +G  +L ++ND+LD+SK  + K+ +    + L++ +S ++ L++  A 
Sbjct: 301 EKSKNYIKDIHDAGKHLLSMINDILDLSKASADKLKVDNIDLDLNKLISSSLILIKPRAY 360

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-VIL 739
           +  + + +        I AD + +KQ+ LN+LSNA+ FT SGG + IS       + V +
Sbjct: 361 QAEVELISRLPKEHVVINADPKRLKQVLLNLLSNAVKFTNSGGSVTISLEKDELAKLVYI 420

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
           +V DTG+G+   ++ K +  FGQI +    + EGTGLGLPL K +V+   GKF + S   
Sbjct: 421 KVIDTGIGIEEKDIPKTLSAFGQIDSELSRKYEGTGLGLPLTKKLVELMNGKFDLQSKIN 480

Query: 800 KGTLIEIIF 808
           KGT + I F
Sbjct: 481 KGTTVTITF 489


>gi|116748449|ref|YP_845136.1| PAS/PAC sensor hybrid histidine kinase [Syntrophobacter
           fumaroxidans MPOB]
 gi|116697513|gb|ABK16701.1| PAS/PAC sensor hybrid histidine kinase [Syntrophobacter
           fumaroxidans MPOB]
          Length = 557

 Score =  276 bits (707), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 73/429 (17%), Positives = 151/429 (35%), Gaps = 40/429 (9%)

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
            + E  + +              +       +  + R+ +  + +   +   ++++ +  
Sbjct: 8   KSGEFFIGLISSDIVTFKGERCLLSV---TTDITELRLARDALVMSEKRYRELVQSANSI 64

Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY--LTEILSLDLR 522
           I  ++ +G +   N      +GY  ++IL K     +     S+      +   +  D  
Sbjct: 65  ILRMDTKGRVTFLNEFAQTFYGYSDDEILGKNILDAIVPEKDSLGRDLTLMIRDILRDPD 124

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIA 578
           +          K  + + +    K +       +      +DI+  K  + +   A+K+ 
Sbjct: 125 RFPNNEYENIRKNGERVWVAWANKGIYDQDGRLVEILSIGNDITHQKLLEEQYRQAQKM- 183

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
                        V+H+    L  I+G+SE+               +   +I  +G    
Sbjct: 184 ----EAIGLLAGGVAHDFNNLLGVIMGYSELCLTTIHKESP---LYDNIEHIKNAGLRAA 236

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
            +V  LL  S+    K  L    V L+  +SE   +++     + I + ++   ++  + 
Sbjct: 237 TLVRQLLAFSR----KQILDPRVVDLNTIISETEKMLRRLI-GEDIQLESTLEPDLWPVR 291

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTT--------------HTSNEEVILRVRDT 744
            D   ++Q+ LN+  NA    P GG++ I T                 +   V+L V D 
Sbjct: 292 IDPSQLEQVILNLAVNARDAMPDGGRLTIRTANVTLDDSFAREQVEAVAGPYVLLEVTDN 351

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G G+    L +  +PF         +G GTGLGL     ++  + G   + S P  GT  
Sbjct: 352 GAGIDKDTLRRIFEPFFTTK----EKGRGTGLGLATVYGIIKQSSGHISVRSRPRCGTTF 407

Query: 805 EIIFPLYDT 813
            I  P  + 
Sbjct: 408 SIYLPRVEE 416



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 43/394 (10%), Positives = 100/394 (25%), Gaps = 32/394 (8%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL----HIDPNNHIGDLLKRQNTW 143
            +D  G +  ++E      G    +++G  + D           D    I D+L+  + +
Sbjct: 67  RMDTKGRVTFLNEFAQTFYGYSDDEILGKNILDAIVPEKDSLGRDLTLMIRDILRDPDRF 126

Query: 144 -YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
              +       G    V +  A   IY ++         G  +            ++  K
Sbjct: 127 PNNEYENIRKNGE--RVWVAWANKGIYDQDGRLVEILSIG--NDITHQKLLEEQYRQAQK 182

Query: 203 K-FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
                L      H         +   +     +  ++ +    E+  +      T    L
Sbjct: 183 MEAIGLLAGGVAHDFNNLLGVIMGYSELCLTTIHKESPLYDNIEHIKNAGLRAATLVRQL 242

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN---SKESFEYLSHRNHPSLSAYFDEG 318
           L      +        +N      ++    L       + + E          S      
Sbjct: 243 LAFSRKQI-LDPRVVDLNTIISETEKMLRRLIGEDIQLESTLEPDLWPVRIDPSQLEQVI 301

Query: 319 ENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
            NL     D  P    +     +  AN +       + V+ +     L  + D     D 
Sbjct: 302 LNLAVNARDAMPDGGRL----TIRTANVTLDDSFAREQVEAVAGPYVLLEVTDNGAGIDK 357

Query: 379 NAIKPV-----MLYRSDRTCIAASARLHTIQWNRENSLAMTFIP---------FEKANQF 424
           + ++ +           R      A ++ I       +++   P           +  + 
Sbjct: 358 DTLRRIFEPFFTTKEKGRGTGLGLATVYGIIKQSSGHISVRSRPRCGTTFSIYLPRVEEV 417

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458
            E         +          +  +   L +++
Sbjct: 418 AEAERYPRAGADAYPRGSETILLVEDEALLKTMI 451


>gi|209547179|ref|YP_002279097.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|209538423|gb|ACI58357.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 636

 Score =  276 bits (707), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 82/598 (13%), Positives = 198/598 (33%), Gaps = 46/598 (7%)

Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
             D      ++  + + +++   +      + +            +       +      
Sbjct: 56  PDDTSRLASEWHEIMASKNAREVEGRLRRADGHYRWCTLRQKPRFDPDGNVVRWYGVVLD 115

Query: 309 PSLSAYFD-----------EGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKS 356
                  +             E      ++  P+  +     G+  + N S+L     + 
Sbjct: 116 IEDRKQAENALKETKTALAASEENLSLIINSLPVLVWSARPDGSADFVNQSWLDYAG-RP 174

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
            D I   G L           ++    V +++ D      +     I+    N     F 
Sbjct: 175 ADQILEWGFLD------LYHPDDIPGMVAIWKRDLEHSDHTVLKGRIRGADGNYRWFYFS 228

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINK-------RKMEIEVMQLCSILEATSDGIAIIN 469
             +  +     +   G   +  D +  +         +     +L  I+           
Sbjct: 229 GRKLVDANG-VVRWFGCNIDIEDLQAAENALRESETALRESEHKLSLIINTIPAMAWSCT 287

Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
            +G +   NR +    G PVE+I+   F      +    M     +I++    + ++   
Sbjct: 288 PDGRLEYFNRNLIDYVGLPVEEIVGFGFYRMFHPDDVEPMRFAWDDIVATKKSRPVDARI 347

Query: 530 LGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESS--HK 585
             +  E +  +LR         +   +   + DI + K+ +  L  ++      +     
Sbjct: 348 RRADGEYRWFNLRQSPLLDRDGNVVRWYGVVVDIEDRKRAEESLRQSQSNLAHVTRMTAT 407

Query: 586 SDFLARVSHEIRTPLTAIIGFS-EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
            +    ++HE+  PL AI+  +   ++  + G     +    A  I + G+   DI+  +
Sbjct: 408 GELAVSIAHEVNQPLMAIVTNAGTCLRWLQPGHTDIEQARLAAERIVKDGHRAGDIIASI 467

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704
               +  + K     E   L  A+   + L++     + I +          ++ D   +
Sbjct: 468 ----RAMAQKSPARMEQTDLKGALHHVLDLLRGELRHRDIELDLDLPQRSLEVIGDRTQL 523

Query: 705 KQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761
           +Q+ LN++ N+           +I I      ++ V + V DTG G+++ EL++  + F 
Sbjct: 524 QQVVLNLVMNSAEEMARSSGERRIGIRCAEDEHQFVKVSVSDTGRGVSSDELDRVFETFY 583

Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK-GTLIEIIFPLYDTSHPHD 818
                      G G+GL + +++V+A+ G+ +  +   + G +     P+ + +   D
Sbjct: 584 STKAD------GIGMGLSICRSIVEAHGGRIWASAADNQIGAVFTFTLPMAEVAAADD 635



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 40/401 (9%), Positives = 90/401 (22%), Gaps = 32/401 (7%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            W+  + G L   +      IG    ++ G R   +               +        
Sbjct: 18  VWSATSDGMLDFANRHFLDFIGAPLEQISGERFYGIFHPDDTSRLASEWHEIMASKNARE 77

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR-------ALGK 198
                     +      L   P +  +      R +G+V                     
Sbjct: 78  VEGRLRRADGHYR-WCTLRQKPRFDPDGNVV--RWYGVVLDIEDRKQAENALKETKTALA 134

Query: 199 RLDKKFSHLHEIKKGHSSVEKEK--YDIFSQQSPPPHLRMKNKV--SSLTEYYAHKDDVL 254
             ++  S +           +     D  +Q       R  +++      + Y   D   
Sbjct: 135 ASEENLSLIINSLPVLVWSARPDGSADFVNQSWLDYAGRPADQILEWGFLDLYHPDDIPG 194

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESF----------EYLS 304
               +            +      + N          L + +                 +
Sbjct: 195 MVAIWKRDLEHSDHTVLKGRIRGADGNYRWFYFSGRKLVDANGVVRWFGCNIDIEDLQAA 254

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIA 363
                       E E+     ++  P   +  +  G L Y N + +       V++I   
Sbjct: 255 ENALRESETALRESEHKLSLIINTIPAMAWSCTPDGRLEYFNRNLIDYVGL-PVEEIVGF 313

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
           G               A   ++  +  R      AR   I+                 ++
Sbjct: 314 GFYRMFHPDDVEPMRFAWDDIVATKKSR---PVDAR---IRRADGEYRWFNLRQSPLLDR 367

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
               +   G+  +  D +  +  +      L  +   T+ G
Sbjct: 368 DGNVVRWYGVVVDIEDRKRAEESLRQSQSNLAHVTRMTATG 408



 Score = 65.4 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 25/246 (10%), Positives = 59/246 (23%), Gaps = 7/246 (2%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK 146
           W+    G L+  +  L   +G    +++G     +     ++P     D +         
Sbjct: 284 WSCTPDGRLEYFNRNLIDYVGLPVEEIVGFGFYRMFHPDDVEPMRFAWDDIVATKKSRPV 343

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                      Y   +L   P+  R+      R +G+V             ++       
Sbjct: 344 DARIRRA-DGEYRWFNLRQSPLLDRDGNVV--RWYGVVVDIEDRKRAEESLRQSQSN--- 397

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
           L  + +  ++ E           P   +              H D          +  + 
Sbjct: 398 LAHVTRMTATGELAVSIAHEVNQPLMAIVTNAGTCLRWLQPGHTDIEQARLAAERIVKDG 457

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL-SHRNHPSLSAYFDEGENLTPET 325
               +          +   +     L+       + L     H  +    D  +      
Sbjct: 458 HRAGDIIASIRAMAQKSPARMEQTDLKGALHHVLDLLRGELRHRDIELDLDLPQRSLEVI 517

Query: 326 VDKCPI 331
            D+  +
Sbjct: 518 GDRTQL 523



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 42/134 (31%), Gaps = 6/134 (4%)

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           I++     +     +G++   NR      G P+E I  + F      +  S +     EI
Sbjct: 10  IIDLIPAMVWSATSDGMLDFANRHFLDFIGAPLEQISGERFYGIFHPDDTSRLASEWHEI 69

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLS 572
           ++    +  E        +       +  K           +   + DI + KQ +N L 
Sbjct: 70  MASKNAR--EVEGRLRRADGHYRWCTLRQKPRFDPDGNVVRWYGVVLDIEDRKQAENALK 127

Query: 573 HAKKIAEKESSHKS 586
             K        + S
Sbjct: 128 ETKTALAASEENLS 141


>gi|167769268|ref|ZP_02441321.1| hypothetical protein ANACOL_00591 [Anaerotruncus colihominis DSM
           17241]
 gi|167668908|gb|EDS13038.1| hypothetical protein ANACOL_00591 [Anaerotruncus colihominis DSM
           17241]
          Length = 1072

 Score =  276 bits (707), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 89/358 (24%), Positives = 152/358 (42%), Gaps = 15/358 (4%)

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           I  +T   I I + EG +   N+     F  P   ++ +            V    + E 
Sbjct: 239 IYSSTKTPILIFDNEGRLALANKCTPLFFDLPAGALMGRRPEDLF----LRVPADGVGET 294

Query: 517 LSLDLRQTLEKITLGS-TKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575
            S    Q     ++    K+   +++  +             ++D++E  +    L   +
Sbjct: 295 HSDSPVQMTRFNSVCRFNKKPCDITVTNVYDAYSEVIGTIYVVYDMTENMRRIQLLDRMR 354

Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
           +   + +  KS FLA +SHEIRTP+ A+IG SE++  ++               I  +G 
Sbjct: 355 RAEVESNRLKSTFLANMSHEIRTPINAVIGMSEILMRKKL----PDDLRADVGVIHSAGQ 410

Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695
            +L I++++LD SKIESGK  L      L   V   + ++ +  ++K + +      + P
Sbjct: 411 GLLAIISEILDFSKIESGKFELIETEYMLPALVETVVHIIGVRFSKKPVCLLIDIEPDTP 470

Query: 696 R-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTN 750
             +  D + V+QI LN+LSNA  FT SG  + +        E    +I+ V DTG G+  
Sbjct: 471 IGLFGDNQRVQQILLNLLSNAEKFTQSG-YVRLYWRWEHAGEDMVRMIISVEDTGSGIRP 529

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
             LEK    + Q+         GTGLGL + + M     G   + S   KG++  + F
Sbjct: 530 ENLEKIFAQYQQVDAKSNRALVGTGLGLAIGREMARMMGGDITVESEYGKGSVFTVTF 587


>gi|154490237|ref|ZP_02030498.1| hypothetical protein PARMER_00469 [Parabacteroides merdae ATCC
           43184]
 gi|154089129|gb|EDN88173.1| hypothetical protein PARMER_00469 [Parabacteroides merdae ATCC
           43184]
          Length = 561

 Score =  276 bits (707), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 106/526 (20%), Positives = 191/526 (36%), Gaps = 45/526 (8%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFV---YSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365
             +S   D    L    +DK P+  FV          Y N     +T   + +       
Sbjct: 58  RPISQKQDSLHGLINTILDKLPLGVFVKDAEDGFRYLYWNRFMEEITGIGTEEVEGHNDF 117

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA---RLHTIQWNRENSLAMTFIPFEKAN 422
              L     +     +            I  S      + I  +    + +T  P   +N
Sbjct: 118 --ELSFDAIMPAEERLGLDRDVMETGRTIEFSGKISDAYGIPKD----IEVTKFPIALSN 171

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD----GIAI-----INREGI 473
             P       +  +       +  +    +     L  ++D     I +      N +  
Sbjct: 172 GKP---LLLALWRDVTVRNKMENTLRRSQVLTKMAL-HSNDIRLCSIFVNPDSKRNYDDS 227

Query: 474 ILSTNRAVSKLFGYPVE--DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT-LEKITL 530
           ++  N     L G   E  DI    F   +  +     +    ++ S ++ +  +E    
Sbjct: 228 VVQVNNW---LPGKEDELVDISWPRFAARVHPDDRERHDEAFRKLCSGEISEMKIELRVK 284

Query: 531 GSTKEEKLLSLRIIIKKLPFSSCYSLTM----HDISEWKQEKNKLSHAKKIAEKESSHKS 586
               +                    L +     +I E K ++  L  AK  AE     KS
Sbjct: 285 YPGMDHYHWRESSATVYERDERGRVLVILGCTINIQERKGQELNLEEAKHKAELADKMKS 344

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
            +LA +SHEIRTPL AI GFSE++         +    EY   I  +  L++ ++ND+LD
Sbjct: 345 KYLADMSHEIRTPLNAITGFSELMA----FADSDEERREYYEIIKTNNLLLMQLINDILD 400

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706
           +SKIE+  + + +EPV ++  +    + ++L   E  + +     +      AD   + Q
Sbjct: 401 LSKIEADAIRISYEPVDINGLMDTIFASIKLRMPE-GVQLFLEKGSCTCCFGADSIRLLQ 459

Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
           +  N+ +NAI  T  G  I +  T   ++ +   V+DTG G+   +LE     F ++   
Sbjct: 460 LINNLANNAIKNTKQGS-ITLGYTCLPDKCLEFYVKDTGTGIAKDKLESLFTRFVKV--- 515

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
                EG GLGL + + +V    G  ++ S    G+    + P ++
Sbjct: 516 -NDYVEGIGLGLAICQGLVTKMGGSMHVESELGVGSTFSFVLPSHE 560


>gi|60680227|ref|YP_210371.1| putative histidine kinase [Bacteroides fragilis NCTC 9343]
 gi|60491661|emb|CAH06413.1| putative histidine kinase [Bacteroides fragilis NCTC 9343]
          Length = 389

 Score =  276 bits (707), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 79/338 (23%), Positives = 142/338 (42%), Gaps = 16/338 (4%)

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL-EKITLGSTKEE- 536
            A  ++F      +        + +     +      IL   +++ + E       +E  
Sbjct: 54  PAGWEIFHNDSFPVSIARVYQGIYKEDRLRVIEACRGILKGKMKKVVVELRFWAKKREGF 113

Query: 537 --KLLSLRIIIKKLPFSSCYSLT---MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
             + L +  I  K+  +         +  I+  K  + +L+ AK+ AE+ +  KS  +A 
Sbjct: 114 VLEWLEMHAIPGKVDENGRLLTVEGSLMSITRRKVMEEELTAAKEKAEEANRLKSALIAN 173

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           ++HEIRTPL AI+GF+ ++              EY   I  +   +L ++ND++D+S IE
Sbjct: 174 MNHEIRTPLNAIVGFASLLS----IIDDEKEQQEYIGLIQSNTEHLLRLMNDVIDLSNIE 229

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
           SG M++    V LD  + E        A    +++      +   I  D   + QI  ++
Sbjct: 230 SGVMDIVGSDVVLDSLMKEMELTYVPKAETNNLVLAWDREQSNAHIYTDRDRLIQILEHL 289

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           L NAI FT  G  +        N ++   V DTG G+ N + E   + F ++ +      
Sbjct: 290 LDNAIKFTTKG-TVHWGYQEKENGQIRFYVTDTGCGIPNDKKEVIFERFVKLDSFT---- 344

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +G GLGL L K +++   G   + S   +G+      P
Sbjct: 345 QGLGLGLSLCKIIIERMHGTIGVESEVGEGSTFWFTIP 382


>gi|160889853|ref|ZP_02070856.1| hypothetical protein BACUNI_02284 [Bacteroides uniformis ATCC 8492]
 gi|156860845|gb|EDO54276.1| hypothetical protein BACUNI_02284 [Bacteroides uniformis ATCC 8492]
          Length = 759

 Score =  276 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 91/422 (21%), Positives = 168/422 (39%), Gaps = 17/422 (4%)

Query: 392 TCIAASARLHTIQWNRENSLAMTFIPFEKAN--QFPENMPQNGIEPEDVDTRINKRKMEI 449
             I     +  I ++      +       A        +    +  E    R   R +  
Sbjct: 348 ESIPVEYTVMYIPFSERYRYHILVGSILGAVFVLTVIVLLSFSLLHERRRKREALRNLLY 407

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
           E   LC  +E  S        EG  +S +    +L  +    +L    T ++      V 
Sbjct: 408 EHETLCLAIEGNST--YAWRLEGDSVSCDSQFCELIHHRSGRLLLNEITPYIHPGDLPVF 465

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL-TMHDISEWKQEK 568
              +      +      +     T E +           P  +      + +I E K  +
Sbjct: 466 RKNIAS--RHERTHHKGQYRCNFTGEFQWWEFSYNTIHTPGHAPIIAGLLQNIQELKDHE 523

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
            +L  ++++AE+    K  FL  +SHEIRTPL AI+GFS+++ N+      +    E+ +
Sbjct: 524 QELIESRELAEQA-ELKQSFLNNMSHEIRTPLNAIVGFSDMLANEP--EFSDEERQEFVD 580

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I+ +  L+L +V D+L++S+IESG ++  F+  S+ + + +      L      +    
Sbjct: 581 IINTNTKLLLKLVGDVLELSRIESGNLSFIFQRESVRQLLDDVYQTHSLLIQPP-LQFLK 639

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN-EEVILRVRDTGVG 747
            F     ++  D   + Q+  N L+NA  FT  G  I +     S   EV L V DTG+G
Sbjct: 640 DFPPEDVQVNVDPMRLTQVLTNFLNNANKFTKEGS-IQLGYCCPSGMSEVHLYVEDTGIG 698

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           + + E +   + F +    +    +G GLGL +   +V+   G+  + S   +G+   ++
Sbjct: 699 IPHSEQKMIFERFYK----RSEFSQGVGLGLSICVLIVEKMGGRIELRSEEGRGSRFTVV 754

Query: 808 FP 809
            P
Sbjct: 755 LP 756


>gi|75907566|ref|YP_321862.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
 gi|75701291|gb|ABA20967.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
          Length = 576

 Score =  276 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 74/411 (18%), Positives = 171/411 (41%), Gaps = 34/411 (8%)

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
           E+   + F      N          +      ++  ++K+  +     +IL   +D + +
Sbjct: 47  EHKTLVAFCLVIFVNILLLTYLYKLLCLYITKSQQAEQKIREQT----AILNIVNDAVLV 102

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
            + +  I+  N+   +L+G+  E+ L K  T  L Q + + +   L+ ++S    +    
Sbjct: 103 GSIDHQIIFWNKGAERLYGWKAEETLGKNITEILYQPSSTKLKSALSTVMSEGEWRG--- 159

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
                +K+ + + +      +               +I+  KQ + +L  ++++      
Sbjct: 160 ELHQLSKDGEEIIVESRWVLVRDEEGQPKSILSVNTEITPKKQLEAQLLRSQRL-----E 214

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
                 + ++H++   LT I+   ++++ +    L  P+  +  N ++ +     +++  
Sbjct: 215 SIGTLASGIAHDLNNILTPILMAVQLLQMK----LHEPQVQKVLNTLESNVKRGANLLRQ 270

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703
           +L  ++   GK  +    V + + + E   +VQ     K I+ +T    N+  +  D   
Sbjct: 271 VLSFARGIEGKKTI----VPVRKLILEIEQIVQ-QTFSKSIICQTYIPENLWYVSGDTTQ 325

Query: 704 VKQIALNILSNAIHFTPSGGQIIIS-----TTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
           + Q+ +N++ NA    P+GG + I+      +      + L + DTG+G+     ++  +
Sbjct: 326 LHQVLMNLVLNARDAMPNGGILKITADNVVLSPQGKHYIKLSIEDTGLGIPAKIQKQIFE 385

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           PF     S +  G+GTGLGL     ++D + G   + ST  KGT  ++  P
Sbjct: 386 PFF----STKEVGKGTGLGLSTVLNIIDNHGGSINVQSTEGKGTRFQVYLP 432



 Score = 48.5 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 9/114 (7%), Positives = 30/114 (26%), Gaps = 4/114 (3%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151
              +   ++   +  G  A + +G  + ++               +  +  W G+     
Sbjct: 106 DHQIIFWNKGAERLYGWKAEETLGKNITEILYQPSSTKLKSALSTVMSEGEWRGELHQLS 165

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
            +G    + ++   + +     +        +           A   R  +  S
Sbjct: 166 KDGE--EIIVESRWVLVRDEEGQPKSI--LSVNTEITPKKQLEAQLLRSQRLES 215


>gi|329921992|ref|ZP_08277799.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Paenibacillus sp. HGF5]
 gi|328942452|gb|EGG38715.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Paenibacillus sp. HGF5]
          Length = 484

 Score =  276 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 71/254 (27%), Positives = 125/254 (49%), Gaps = 9/254 (3%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E  +  + L++  +   + +  K DF++ +SHE+RTPLT+I G+SE +     G      
Sbjct: 223 ELGELSSTLNYMAQEIVRSNQVKDDFISSISHELRTPLTSIKGWSETL---DSGGYDPEE 279

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                  I +  + ++ +V +LLD SK++  +M L    V+L E + E +  +   A +K
Sbjct: 280 TKIGMQIISKETDRLIGLVEELLDFSKLQQNEMKLVKGIVNLRELLQEIMLNLWTKAEKK 339

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
            + I+       P I  D+  +KQ+ LNI+ NA+ F+   G I +S        VI+ V+
Sbjct: 340 GVQIKLESDEK-PIIYGDVNRLKQVFLNIVDNAVKFSHENGVINLSFAMEEK-FVIVTVQ 397

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G+G+++  L +    F Q+         GTGLGL + + +V+ + G   + S    GT
Sbjct: 398 DHGIGISDEHLRRVKDRFFQVNPLN----GGTGLGLAITQQLVELHGGTMEMESELGHGT 453

Query: 803 LIEIIFPLYDTSHP 816
            + +  PL +   P
Sbjct: 454 AVIVKLPLPEGKIP 467


>gi|325103898|ref|YP_004273552.1| PAS/PAC sensor signal transduction histidine kinase [Pedobacter
           saltans DSM 12145]
 gi|324972746|gb|ADY51730.1| PAS/PAC sensor signal transduction histidine kinase [Pedobacter
           saltans DSM 12145]
          Length = 869

 Score =  276 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 107/710 (15%), Positives = 240/710 (33%), Gaps = 46/710 (6%)

Query: 116 MRLCDVSDILHIDPNNHIGDLLKRQNTWYGK--TTLWPI---EGTNLYVPID-LAALPIY 169
            +L   +  L     + +  L + +++      T  +P+    G    + I       ++
Sbjct: 181 RKLEIFNHELEDRIADRVAALKETESSLRNLVMTAHYPLMILRGREWIIEIANQQIANLW 240

Query: 170 SRNRE-FSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228
            R+ E   G +   ++        P  L +  D    +  E +  H +        +   
Sbjct: 241 DRSLEGIIGKKLMDVLPELEGQPFPELLRQVYDSGVGYGQEEEIFHFNSSAGPMTKYISF 300

Query: 229 SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288
              P    + +V  +    A     +  ++  L  S +      + F  +N       + 
Sbjct: 301 YYDPMFDAEQQVCGII-VAADDITNMIKQRQLLEESLKKERALSDQFTALNEKLTATVEE 359

Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN--LFYANP 346
                     S E L  +N     A     E      V + P+   V    +  +   N 
Sbjct: 360 LSATNAELLRSQEILQQKN-----AELAISERRFRNLVRQAPVGICVVRAEDLVIQEINE 414

Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
           SFL L      + +E       + +A ++        +          AA+    T+  +
Sbjct: 415 SFLELVGKPR-EKLENHSVWEGISEAAEVYAP----IMEQVIKTGQSFAATEHEVTLIRH 469

Query: 407 REN-SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGI 465
            +  S+++ F+     N   + +    +  +      ++R +E    ++   ++A   G 
Sbjct: 470 GKPESVSVDFVYEPVLNTKGQVVGIMVVAIDVTAKVNSRRVIEDMEERIRLAVQAAGMGT 529

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
              N     + T+     +FG        +       ++       +     S  L    
Sbjct: 530 FEYNYALDTIITSERFDDIFGIHQPSSRAEILKCLYREDLILSEKAHEEARSSGKL--FY 587

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
           E   +     ++ + ++  +             T+ DI+ +KQ +               
Sbjct: 588 EARIMHPIGGKRWIRVQANVYYSQDGVPERLLGTVLDITSFKQLQE-------------- 633

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
            K DF++  SHE++TPLT++    + +  +    L +P           S N +  +V+D
Sbjct: 634 QKDDFISIASHELKTPLTSLKVSLQ-LLQRLKDNLSSPIIPRLIEQSGLSMNKISLLVDD 692

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703
           LL++S++  G + L      +   +      V+    +K   +     + +  + AD + 
Sbjct: 693 LLNVSRMNEGSIQLRKSNFVVKHLLENCCGYVREIRAQK---LVFKGDSKL-SVYADEQR 748

Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
           ++Q+  N ++NA  + P    I +           + V+D+G G+   + +     + + 
Sbjct: 749 IEQVVSNFVNNAFKYAPKSKTIYL-IAERVGNMAKISVKDSGPGIPLEKQKHLFDRYYRA 807

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
            +S      G GLGL +   ++  + G+  + S   +G+      PL +T
Sbjct: 808 NDSGNHVS-GLGLGLYICADIIHRHGGEIGVTSELGEGSTFWFTLPLGNT 856



 Score = 45.8 bits (107), Expect = 0.034,   Method: Composition-based stats.
 Identities = 22/242 (9%), Positives = 63/242 (26%), Gaps = 8/242 (3%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY--GKTTL 149
              ++EI+E   + +G    K+    + +            +  ++K   ++        
Sbjct: 406 DLVIQEINESFLELVGKPREKLENHSVWEGISEAAEVYAPIMEQVIKTGQSFAATEHEVT 465

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
               G    V +D    P+ +   +  G     I        + R + + ++++     +
Sbjct: 466 LIRHGKPESVSVDFVYEPVLNTKGQVVGIMVVAI--DVTAKVNSRRVIEDMEERIRLAVQ 523

Query: 210 IKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
                +       D             +   +  + + +    +D +L  + +    S  
Sbjct: 524 AAGMGTFEYNYALDTIITSERFDDIFGIHQPSSRAEILKCLYREDLILSEKAHEEARSSG 583

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
               E    H I   +   +       +        L      +      E ++      
Sbjct: 584 KLFYEARIMHPI-GGKRWIRVQANVYYSQDGVPERLLGTVLDITSFKQLQEQKDDFISIA 642

Query: 327 DK 328
             
Sbjct: 643 SH 644


>gi|294631784|ref|ZP_06710344.1| sensor histidine kinase/response regulator [Streptomyces sp. e14]
 gi|292835117|gb|EFF93466.1| sensor histidine kinase/response regulator [Streptomyces sp. e14]
          Length = 1778

 Score =  276 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 75/329 (22%), Positives = 153/329 (46%), Gaps = 27/329 (8%)

Query: 514  TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT-MHDI----SEWKQEK 568
             ++L      T +        E++  +L+    +L   +        DI    SE ++ +
Sbjct: 1211 EQLLKQSQELTEQLRLRSEELEQRQKALQASNAELEEKAELLAQQNRDIEAKNSEIEEAR 1270

Query: 569  NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
              L    +       ++S+FLA +SHE+RTPL +++  ++++ +   G L  P+ +E+A 
Sbjct: 1271 QVLEERAEQLAVSMRYRSEFLANMSHELRTPLNSLLILAKLLADNAEGNLS-PKQVEFAE 1329

Query: 629  YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
             I  +G+ +L ++ND+LD+SK+E+GKM++    ++L + +    +  +    EK + +  
Sbjct: 1330 TIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLIDYVEATFRPLTAEKGLDLSV 1389

Query: 689  SFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTS------------- 733
              +  +P  +  D + + Q+  N+LSNA+ FT SG  +++I                   
Sbjct: 1390 RVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDSGSVELVIRPARDDVPQAIREQLLEAG 1449

Query: 734  ------NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
                   + +   V DTG+G+   ++    + F Q   +   +  GTGLGL +++ +   
Sbjct: 1450 SLTDPEADMIAFSVTDTGIGIAASKMRVIFEAFKQADGTTSRKYGGTGLGLSISREIAQL 1509

Query: 788  NMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
              G+ +  S P +G+   +  PL+    P
Sbjct: 1510 LGGEIHAQSEPGRGSTFTLYLPLHPGELP 1538


>gi|218700838|ref|YP_002408467.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Escherichia coli IAI39]
 gi|218370824|emb|CAR18637.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Escherichia coli IAI39]
          Length = 1197

 Score =  276 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 90/421 (21%), Positives = 166/421 (39%), Gaps = 16/421 (3%)

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
            W+  +                  +    +       ++ +  +E ++    ++ ++  +
Sbjct: 528 TWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISFRKALSDSLPN 587

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--NTPSVMNHYLTEILSLDL 521
              ++N +G ++S N A    F          P         +  S  +    E      
Sbjct: 588 PTYVVNWQGNVISHNSAFEHYFTADYYKSAMLPLENSESPFKDVFSNTHEVTAETKENRT 647

Query: 522 RQTLEKIT-LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
             T       G  K        +        + Y     DI+E +   + L   +  A  
Sbjct: 648 IYTQVFEIDNGIEKRCINHWHTLCNLPASEHAVYICGWQDITETRDLIHALEVERNKAIN 707

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            +  KS FLA +SHEIRTP+++I+GF E++       L   + +E  +    +G  +L +
Sbjct: 708 ATVAKSQFLATMSHEIRTPISSIMGFLELLS---GSGLSKEQRVEAISLAYATGQSLLGL 764

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR---I 697
           + ++LD+ KIESG   L  + V +   V          A  K I +  S ++ +P    +
Sbjct: 765 IGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIAL--SCSSTLPERYLV 822

Query: 698 LADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMTNYELE 754
             D ++ KQ+  N+LSNA+ FT  G  +I  S  H  +   ++   + D+G G++  E +
Sbjct: 823 KIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLGHIDDNHAVIKMTIMDSGSGLSQEEQQ 882

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           +  K + Q   S   +  G+GLGL + K ++    G   + S P  GT   I  P+  T 
Sbjct: 883 QLFKRYSQT--SAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVEITQ 940

Query: 815 H 815
            
Sbjct: 941 Q 941


>gi|261406259|ref|YP_003242500.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus sp. Y412MC10]
 gi|261282722|gb|ACX64693.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus sp. Y412MC10]
          Length = 484

 Score =  276 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 71/254 (27%), Positives = 125/254 (49%), Gaps = 9/254 (3%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E  +  + L++  +   + +  K DF++ +SHE+RTPLT+I G+SE +     G      
Sbjct: 223 ELGELSSTLNYMAQEIVRSNQVKDDFISSISHELRTPLTSIKGWSETL---DSGGYDPEE 279

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                  I +  + ++ +V +LLD SK++  +M L    V+L E + E +  +   A +K
Sbjct: 280 TKIGMQIISKETDRLIGLVEELLDFSKLQQNEMKLVKGIVNLRELLQEIMLNLWTKAEKK 339

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
            + I+       P I  D+  +KQ+ LNI+ NA+ F+   G I +S        VI+ V+
Sbjct: 340 GVQIKLESDEK-PIIYGDVNRLKQVFLNIVDNAVKFSHENGVINLSFAMEEK-FVIVTVQ 397

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G+G+++  L +    F Q+         GTGLGL + + +V+ + G   + S    GT
Sbjct: 398 DHGIGISDEHLRRVKDRFFQVNPLN----GGTGLGLAITQQLVELHGGTMEMESELGHGT 453

Query: 803 LIEIIFPLYDTSHP 816
            + +  PL +   P
Sbjct: 454 AVIVKLPLPEGKIP 467


>gi|78046084|ref|YP_362259.1| two-component system sensor protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78034514|emb|CAJ22159.1| two-component system sensor protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 769

 Score =  276 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 72/250 (28%), Positives = 120/250 (48%), Gaps = 10/250 (4%)

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + + +L  AK+ AE  +  K +FLA +SHEIRTPL  II   E+I + +          +
Sbjct: 92  ELEQELLRAKQAAEAATLAKGEFLATMSHEIRTPLNGIIPMLELISSGQLSV----DQRD 147

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
                  S   +L IV+D+LD SK+E+ K+ L     +L E +   I L+Q  A  +++ 
Sbjct: 148 MLQTATGSSLQLLRIVDDILDYSKLEANKLELEITTFNLRELLDGVIQLLQRTAEGRQLR 207

Query: 686 IRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH----TSNEEVILR 740
           +      ++   +  D   ++Q+  N++ NAI FT  G  + I         +   +  +
Sbjct: 208 LSLDIEPSVRLLVRGDPIRLRQVLGNLIGNAIKFTERGS-VDIQLRRLGETRAQHLLRFQ 266

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           VRDTG+G+   +  +  + F Q   S      GTGLGL + K ++D   G+  + S P +
Sbjct: 267 VRDTGIGIAPDQQARLFRSFAQADASTTRLYGGTGLGLAICKRIIDLMGGRIGVESEPGR 326

Query: 801 GTLIEIIFPL 810
           G+      PL
Sbjct: 327 GSTFWFEIPL 336


>gi|269140062|ref|YP_003296763.1| hybrid sensory histidine kinase [Edwardsiella tarda EIB202]
 gi|267985723|gb|ACY85552.1| hybrid sensory histidine kinase [Edwardsiella tarda EIB202]
 gi|304559890|gb|ADM42554.1| BarA sensory histidine kinase [Edwardsiella tarda FL6-60]
          Length = 919

 Score =  276 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 87/333 (26%), Positives = 151/333 (45%), Gaps = 17/333 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           LF Y +   +  P    +               L   +   +             +++ +
Sbjct: 188 LFSYRLMRDVTGPIRNMVNTVDR-----IRRGQLDSRVEGHMLGELDMLKNGINSMAMSL 242

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 243 TAYHEEMQQNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTP 302

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+  +             I+Y + I+RS N +L I+ND+LD SK+E+GK+ L  
Sbjct: 303 LNGVIGFTRQVMKTPLSAT----QIDYLHTIERSANNLLTIINDVLDFSKLEAGKLVLEH 358

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P  L E + E  +L+   A++K + +  +  N++P  +L D   ++Q+  N+L NAI F
Sbjct: 359 IPFMLRETIDEVATLLAPSAHDKGLELTLNVRNDVPEHVLGDPMRLQQVLTNLLGNAIKF 418

Query: 719 TPSGG---QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T  G    +I + +      E+ ++V DTG+G++  +  +  + F Q   S   R  GTG
Sbjct: 419 TEKGNIDIRIELRSQTAQAVELEVQVHDTGIGISERQQSQLFQAFRQADASITRRHGGTG 478

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           LGL + + +++   G     S P KG+      
Sbjct: 479 LGLVITQKLINEMGGDIAFHSQPHKGSTFWFHI 511


>gi|260463220|ref|ZP_05811422.1| PAS/PAC sensor signal transduction histidine kinase [Mesorhizobium
           opportunistum WSM2075]
 gi|259031070|gb|EEW32344.1| PAS/PAC sensor signal transduction histidine kinase [Mesorhizobium
           opportunistum WSM2075]
          Length = 851

 Score =  276 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 108/634 (17%), Positives = 214/634 (33%), Gaps = 28/634 (4%)

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244
                                 L E  K  + +  E   +              +  S  
Sbjct: 227 RSQARLKIENHRLAADHDTMIGLLEALKMPAWLRDEHGRLKWVNRAYADAV---EAESAE 283

Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
                  + L  +    + ++    P  E   +  +    +        +    +     
Sbjct: 284 AAVRDAKEFLGGQAREAIEAQHKLHPVFEQSLSTVIEGDRRVFAVTDFASADGSAGLACD 343

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIA 363
                S+   ++       +T+D+      ++     L + N +F  L    S   +  A
Sbjct: 344 TSAIESIRGEYERTVRSHADTLDQLNTAVAIFDTDEKLRFFNQAFQKLWGLDS-GFLHSA 402

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
              + LLD  +     A +P      +    A  A      W          +      +
Sbjct: 403 PDNALLLDRLRSEGKIAEQPEWRRWKEGLLGAYRAVESQEHWWHLPDGKTIRVVANPQPK 462

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
                    +  +       +  + ++       L+  ++G+A+   +G +  +N A + 
Sbjct: 463 GGVTWVFENLTEKMDLESRYRTAVRVQGE----TLDNLAEGVAVFGPDGKLRLSNPAFAT 518

Query: 484 LFGYPVED----ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
           L+G   E     +         ++             ++    +  ++          +L
Sbjct: 519 LWGLDAEATKPNVHVSTIRDLCDRQAVDSPWPSFVAAITGFDDERRDRHGQTELNNGTVL 578

Query: 540 SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
              +I      +    +T  D+++  + +  L    +  EK    K+DF+  VS+E+R+P
Sbjct: 579 RYAMIPLP---NGQVMMTFVDVTDGVRVERALKDKNEALEKSDQLKNDFVQHVSYELRSP 635

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           LT IIGF+E++     GPL   +  EY  ++  S +++L IVND+LD++ +++G M L  
Sbjct: 636 LTNIIGFTELLSLPTTGPLT-QKQREYVEHVGSSSSVLLTIVNDILDLATVDAGIMQLDI 694

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719
             V +D  ++ A  LV     E  I +             D   ++QI  N+LSNA ++ 
Sbjct: 695 SEVHVDRTIAAAAELVADRLQEHSIRLEVDAKAAPKTFHGDETRIRQILYNLLSNAANYA 754

Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG----QIPNSQQIRGEGTG 775
           P    I ++  H ++  V   V D G GM    L+   + F              G    
Sbjct: 755 PEASTIRLACRHLADG-VEFSVHDDGPGMPPDVLDSVFRRFEPRANGGRRRGAGLGL--- 810

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
               + K+ V+ + G   I +   KGT +   FP
Sbjct: 811 ---SIVKSFVELHGGGVRIETGKDKGTTVICTFP 841



 Score = 44.6 bits (104), Expect = 0.061,   Method: Composition-based stats.
 Identities = 34/374 (9%), Positives = 85/374 (22%), Gaps = 23/374 (6%)

Query: 231 PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG 290
                      S T   A + + L       L    S L                     
Sbjct: 9   AGQAVSGGHDDSGTTGSATRRERLSWRGRAGLLLAGSMLAGPLFGAAARAQAAGVSTAGL 68

Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLL 350
           ++                 +  +           + +   +   V         + + L 
Sbjct: 69  SISTIEVMQLAVFVGVTGTAFLSAIVLIRERARTSAENVELRSRVADVNAALRRSEALLN 128

Query: 351 LTKYKS---VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
           L   +      + +    +  L       +  A              AA          +
Sbjct: 129 LRDQRVIVWASENKKPELVGILPVESGAPEERAAFLAFGRWLMPRSAAALEHAIAALREK 188

Query: 408 ENSLAMTFIPFEKANQFPE----NMPQNGIEPEDVDTRINKRKMEIEVMQLCS------- 456
                +       A                     +T+ ++ +++IE  +L +       
Sbjct: 189 ARPFDLVIESQAGAPLEVHGRKSAAHVLVRFVSLSETQRSQARLKIENHRLAADHDTMIG 248

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY--LT 514
           +LEA      + +  G +   NRA +        +   +    FL       +     L 
Sbjct: 249 LLEALKMPAWLRDEHGRLKWVNRAYADAVEAESAEAAVRDAKEFLGGQAREAIEAQHKLH 308

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA 574
            +    L   +E        + ++ ++         +     T    S   + +  +   
Sbjct: 309 PVFEQSLSTVIE-------GDRRVFAVTDFASADGSAGLACDTSAIESIRGEYERTVRSH 361

Query: 575 KKIAEKESSHKSDF 588
               ++ ++  + F
Sbjct: 362 ADTLDQLNTAVAIF 375



 Score = 44.6 bits (104), Expect = 0.072,   Method: Composition-based stats.
 Identities = 43/379 (11%), Positives = 101/379 (26%), Gaps = 31/379 (8%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK 146
           W  D HG LK ++      +   + +       +              +   + +  + +
Sbjct: 258 WLRDEHGRLKWVNRAYADAVEAESAEAAVRDAKEFLGG----QAREAIEAQHKLHPVFEQ 313

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
           +    IEG      +   A           G  G      + +++      + +      
Sbjct: 314 SLSTVIEGDRRVFAVTDFASA--------DGSAGLA-CDTSAIESIRGEYERTVRSHADT 364

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK--YPLLTS 264
           L ++    +  + ++   F  Q+      + +         A   D L++E         
Sbjct: 365 LDQLNTAVAIFDTDEKLRFFNQAFQKLWGLDSGFLHSAPDNALLLDRLRSEGKIAEQPEW 424

Query: 265 EESSLPEQEDFHTINLNQYTKKQ-------YFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
                     +  +   ++                Q     ++ + +      L + +  
Sbjct: 425 RRWKEGLLGAYRAVESQEHWWHLPDGKTIRVVANPQPKGGVTWVFENLTEKMDLESRYRT 484

Query: 318 GENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
              +  ET+D       V+   G L  +NP+F  L      +  +    +ST+ D     
Sbjct: 485 AVRVQGETLDNLAEGVAVFGPDGKLRLSNPAFATLWGL-DAEATKPNVHVSTIRDLCDRQ 543

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
             ++  P  +            R    + N    L    IP                  +
Sbjct: 544 AVDSPWPSFVAAITGFDDERRDRHGQTELNNGTVLRYAMIPLPNG-------QVMMTFVD 596

Query: 437 DVDTRINKRKMEIEVMQLC 455
             D    +R ++ +   L 
Sbjct: 597 VTDGVRVERALKDKNEALE 615


>gi|197118607|ref|YP_002139034.1| PAS/PAS domain-containing sensor histidine kinase response
           regulator [Geobacter bemidjiensis Bem]
 gi|197087967|gb|ACH39238.1| sensor histidine kinase response regulator, PAS and PAS
           domain-containing protein [Geobacter bemidjiensis Bem]
          Length = 796

 Score =  276 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 89/517 (17%), Positives = 172/517 (33%), Gaps = 41/517 (7%)

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
             +    +  N   + ++       V +  G +   N     ++ Y+  D       +  
Sbjct: 164 RANRKLQDSYNFLTKVMESSANAVIVLNPDGKIAMVNGRCTEMSGYRPEDLYGSE--IDR 221

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
           LL         A    +   S             ++ +                Q     
Sbjct: 222 LLCPQSFDTVLAQ---LRQVSSGKAEIVKFETDLLRKDGSTIA--IACGATPVYQEGRIA 276

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
                     + R +  +++       ++++A    I  ++ +G +   NR   ++ GY 
Sbjct: 277 STVLSVENITERRHSVEQLKAAKEYTENLIQAACVMILGLDLKGNVTLLNRTAEEVTGYN 336

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL-RQTLEKITLGSTKEEKLLSLRIIIKK 547
            ++++ K +   +           +  ++   + R   E   +      + +S R     
Sbjct: 337 TDELIGKNWFETVMGAEAFYKMCTIPGMVGESVNRCAFENQIVTKEGLVRTISWRNSAII 396

Query: 548 LPFSS-CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
                        DI+E ++ + +L H++K+              V+H+    L+ I+G+
Sbjct: 397 EKDERLGTLCFGIDITEHRKIEAQLRHSQKM-----ESIGQLAGGVAHDFNNMLSVIMGY 451

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
           +++ +        N     Y   + ++G    D+V  LL  S+ E     +    V L+ 
Sbjct: 452 AQLCQ---IEVEENSSLWLYLQEVVKAGERSRDMVRKLLAFSRKE----IISPRAVDLNI 504

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726
              E    +     E+ I +    A  +  +  D   V QI +N+  NA    P GG + 
Sbjct: 505 HCIETEKTLSRLIGEE-IKLNFIPATTLWTVKIDPSQVDQILMNLAVNARDAMPEGGCLT 563

Query: 727 ISTT--------------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           IST                   E   L V DTG GM     ++  +PF    +     G+
Sbjct: 564 ISTENATVDEAFCDYRLDARPGEYACLTVADTGFGMDRELTKRIFEPFFTTKD----VGK 619

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GTGLGL     +V  N G   + S P +GT   I  P
Sbjct: 620 GTGLGLATVYGIVTQNGGFLDVDSEPGEGTSFRIYLP 656



 Score = 41.2 bits (95), Expect = 0.74,   Method: Composition-based stats.
 Identities = 13/133 (9%), Positives = 33/133 (24%), Gaps = 7/133 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ--NTWYGK 146
           ++  G +  ++    +  G     + G  +  +      D        +          +
Sbjct: 190 LNPDGKIAMVNGRCTEMSGYRPEDLYGSEIDRLLCPQSFDTVLAQLRQVSSGKAEIVKFE 249

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
           T L   +G+ + +     A P+Y +            V             K   +   +
Sbjct: 250 TDLLRKDGSTIAIAC--GATPVY-QEGRI--ASTVLSVENITERRHSVEQLKAAKEYTEN 304

Query: 207 LHEIKKGHSSVEK 219
           L +          
Sbjct: 305 LIQAACVMILGLD 317


>gi|109898859|ref|YP_662114.1| periplasmic sensor hybrid histidine kinase [Pseudoalteromonas
           atlantica T6c]
 gi|109701140|gb|ABG41060.1| periplasmic sensor hybrid histidine kinase [Pseudoalteromonas
           atlantica T6c]
          Length = 572

 Score =  276 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 76/250 (30%), Positives = 127/250 (50%), Gaps = 11/250 (4%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E ++E++     +K A+  +  KS FLA +SHEIRTP+  +IG  E++   +   +    
Sbjct: 175 ELERERDIALKHEKEAKAATEAKSAFLANMSHEIRTPMNGVIGMIELVSQTKLEKV---- 230

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             +Y     RS + ++ I+ND+LD SKIE G++ +      +++  +E +   Q  A+EK
Sbjct: 231 QQDYIATAKRSADSLMVIINDILDFSKIEVGELTIELVEFDVEQFFAELLHDQQFQASEK 290

Query: 683 RILIRTSFANNI--PRILADLRSVKQIALNILSNAIHFTPSGGQIIIS---TTHTSNEEV 737
            + +       +   +++ D   ++QI  N+LSNAI FT SG  I +    T+ + N E+
Sbjct: 291 GLKLSL-IKEELQHTKVVGDPYRIRQIVNNLLSNAIKFTQSG-HIQVRYSLTSSSDNLEL 348

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
              V DTG+G++N  L      F Q   S   +  GTGLGL + K + +   G   + S 
Sbjct: 349 HCAVTDTGIGVSNEALPYLFDSFSQADTSTTRKFGGTGLGLSITKQLCNLMGGDIKVQSQ 408

Query: 798 PAKGTLIEII 807
             KG+  E  
Sbjct: 409 LGKGSTFEFS 418


>gi|328953514|ref|YP_004370848.1| PAS/PAC sensor hybrid histidine kinase [Desulfobacca acetoxidans
           DSM 11109]
 gi|328453838|gb|AEB09667.1| PAS/PAC sensor hybrid histidine kinase [Desulfobacca acetoxidans
           DSM 11109]
          Length = 838

 Score =  276 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 97/681 (14%), Positives = 198/681 (29%), Gaps = 68/681 (9%)

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFS--------QQSPPPHLRM 236
                        +          E       V      I S         + P   L+ 
Sbjct: 41  TATEQVKTQEENLQETVSLLQATLESTADGILVIDLAGRIVSYNQKFAKMWRLPDEVLKS 100

Query: 237 KNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN- 295
            +   +L        +            E       +    I+   + +      L +  
Sbjct: 101 HDDARALGWLSQQLKNPQVFLHRVKELYERPHEQSLDILEFIDGRIFERFTQAQYLGDRI 160

Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP---FFVYSHGNLFYANPSFLLLT 352
               + +              + E      +           V +   +   +  +  + 
Sbjct: 161 VGRVWSFRDITERRRAEEVLKQSEQRLKLALSAANRGWYDVNVQTGEAMV--SEEYARML 218

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
            Y+     E A      +      D  A+                        + +    
Sbjct: 219 GYEPEKFSETA---DKCIARLHPDDREAVATAYHAYLKGELPEYRIEFRQQTKSGDWLWT 275

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG 472
           ++     + +   +     G   +    +  +  +     QL  +++   D +  I+R+G
Sbjct: 276 LSMGSIVEWDADGKPRRMLGTHTDISQRKRVEEALRESERQLAQLIDFLPDAMFAIDRQG 335

Query: 473 IILSTNRAVSKLFGYPVEDIL---RKPFTVFLEQNTPSVMNHYLTE-----------ILS 518
            I+  NRA+ ++ G   + IL      +T+         +                 I  
Sbjct: 336 KIIIWNRAIEEMTGVKADSILNEDGHAYTIPFYGIRRPALIDLALANDPDIEKKYLFIKR 395

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT--MHDISEWKQEKNKLSH--A 574
                  E   +    E +LL  +         +       + DI+E +Q + + +   A
Sbjct: 396 EGDILEAEAEVILK-GENRLLYAKARPLYDSQGNVIGAVEAIRDITERQQAEEERAKLEA 454

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
           +    ++          ++H+    L  I+G ++ +      P      I Y   I R+ 
Sbjct: 455 RMREVQKLESLGVLAGGIAHDFNNLLMGIMGNAD-LAQLSLSPASPA--IPYLQEITRAS 511

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
               D+ N +L  S    GK        +L E V E   ++++  ++K + +    A+ +
Sbjct: 512 QRAADLCNQMLAYS----GKGRFLVRRYNLSEIVREMARMLEVSISKKAM-LNYRLADAL 566

Query: 695 PRILADLRSVKQIALNILSNAIHF-TPSGGQIIISTT-----------------HTSNEE 736
           P + AD   ++QI +N++ NA        G I +ST                        
Sbjct: 567 PAVEADATQLRQIIMNLIINASEALNDQNGVITLSTGVMDCDRRYLSESYLDDNLAEGRY 626

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           V L+V D+G G+     ++   PF         +  G GLGL     +V  + G   + S
Sbjct: 627 VFLKVSDSGAGIDEETRQRIFDPFFTT------KFTGRGLGLAAVLGIVRGHRGAIRVGS 680

Query: 797 TPAKGTLIEIIFPLYDTSHPH 817
            P +GT   I+ P   +S   
Sbjct: 681 EPDRGTTFTILLPAVLSSREE 701



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 73/189 (38%), Gaps = 4/189 (2%)

Query: 403 IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT-RINKRKMEIEVMQLCSILEAT 461
           I +  E   A+     E+ +           +    +  +  +  ++  V  L + LE+T
Sbjct: 8   IDYPGEIIEAVDREEQERRSIQEYIFQLEEAKDTATEQVKTQEENLQETVSLLQATLEST 67

Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH--YLTEILSL 519
           +DGI +I+  G I+S N+  +K++  P E +        L   +  + N   +L  +  L
Sbjct: 68  ADGILVIDLAGRIVSYNQKFAKMWRLPDEVLKSHDDARALGWLSQQLKNPQVFLHRVKEL 127

Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDISEWKQEKNKLSHAKKIA 578
             R   + + +    + ++       + L         +  DI+E ++ +  L  +++  
Sbjct: 128 YERPHEQSLDILEFIDGRIFERFTQAQYLGDRIVGRVWSFRDITERRRAEEVLKQSEQRL 187

Query: 579 EKESSHKSD 587
           +   S  + 
Sbjct: 188 KLALSAANR 196



 Score = 77.4 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 38/404 (9%), Positives = 100/404 (24%), Gaps = 43/404 (10%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G +   +++  K       +++                  +   LK    +  +  
Sbjct: 74  IDLAGRIVSYNQKFAKMW-RLPDEVLKSH-------DDARALGWLSQQLKNPQVFLHRVK 125

Query: 149 LWPIEGTNLYVPI-DLAALPIYSR--NREFSGFRGFGIV---HVNRVDNDPRALGKRLDK 202
                     + I +     I+ R    ++ G R  G V              + K+ ++
Sbjct: 126 ELYERPHEQSLDILEFIDGRIFERFTQAQYLGDRIVGRVWSFRDITERRRAEEVLKQSEQ 185

Query: 203 KFSHLHEIKK----------GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD 252
           +                   G + V +E   +   +           ++ L         
Sbjct: 186 RLKLALSAANRGWYDVNVQTGEAMVSEEYARMLGYEPEKFSETADKCIARLHPDDREAVA 245

Query: 253 VLKTE--KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310
                  K  L         + +    +          +       +    +        
Sbjct: 246 TAYHAYLKGELPEYRIEFRQQTKSGDWLWTLSMGSIVEWDADGKPRRMLGTHTDISQRKR 305

Query: 311 LSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL--- 366
           +     E E    + +D  P   F +   G +   N +   +T  K+   +   G     
Sbjct: 306 VEEALRESERQLAQLIDFLPDAMFAIDRQGKIIIWNRAIEEMTGVKADSILNEDGHAYTI 365

Query: 367 -------STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
                    L+D    +D +  K  +  + +   + A A +         +  +      
Sbjct: 366 PFYGIRRPALIDLALANDPDIEKKYLFIKREGDILEAEAEVILK----GENRLLYAKARP 421

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI--LEAT 461
             +     +       +  + +  + +      ++  +  LE+ 
Sbjct: 422 LYDSQGNVIGAVEAIRDITERQQAEEERAKLEARMREVQKLESL 465



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/139 (12%), Positives = 36/139 (25%), Gaps = 14/139 (10%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL-HIDPNNHIGDLLKRQNTWY 144
            + ID  G +   +  + +  G  A  ++       +     I     I   L       
Sbjct: 328 MFAIDRQGKIIIWNRAIEEMTGVKADSILNEDGHAYTIPFYGIRRPALIDLALANDPDIE 387

Query: 145 GKTTLWPIEGTNLYVPIDL-----------AALPIYSRNREFSGFRGFGIVHVNRVDNDP 193
            K      EG  L    ++            A P+Y       G      +         
Sbjct: 388 KKYLFIKREGDILEAEAEVILKGENRLLYAKARPLYDSQGNVIGA--VEAIRDITERQQA 445

Query: 194 RALGKRLDKKFSHLHEIKK 212
                +L+ +   + +++ 
Sbjct: 446 EEERAKLEARMREVQKLES 464


>gi|325106876|ref|YP_004267944.1| integral membrane sensor hybrid histidine kinase [Planctomyces
           brasiliensis DSM 5305]
 gi|324967144|gb|ADY57922.1| integral membrane sensor hybrid histidine kinase [Planctomyces
           brasiliensis DSM 5305]
          Length = 556

 Score =  276 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 76/249 (30%), Positives = 130/249 (52%), Gaps = 8/249 (3%)

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           L+   +  ++ S  KS+FLA +SHEIRTP+TAIIG +E++             ++    I
Sbjct: 148 LAVDNEALKQASQAKSEFLANMSHEIRTPMTAIIGNAELLYELGDLERAPAERLDAIQAI 207

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
            R+ + +LD++ND+LD+SKIE+GK++   +     + V E + L+ + A  K++++ +  
Sbjct: 208 KRNSSHLLDVINDILDLSKIEAGKLSHQLDRHDPQQIVQEVLDLLSVRAEAKQLVLSSRV 267

Query: 691 ANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS---NEEVILRVRDTGV 746
              +P  IL D   ++QI LN++ NAI FT SG  + +           ++ + V DTG+
Sbjct: 268 EGLVPETILTDDTRLRQILLNVVGNAIRFTKSGS-VKVVMRFRETTQRNQLEMEVIDTGI 326

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+      +  +PF Q   S   +  GTGLGL +++ +     G   + S P  G+   I
Sbjct: 327 GIDQETQNRLFEPFTQADTSTTRQFGGTGLGLAISRRLARTLGGDLTLESEPGIGSRFLI 386

Query: 807 IF---PLYD 812
                PL +
Sbjct: 387 SIDPGPLSE 395


>gi|296445825|ref|ZP_06887777.1| multi-sensor hybrid histidine kinase [Methylosinus trichosporium
           OB3b]
 gi|296256653|gb|EFH03728.1| multi-sensor hybrid histidine kinase [Methylosinus trichosporium
           OB3b]
          Length = 839

 Score =  276 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 91/623 (14%), Positives = 202/623 (32%), Gaps = 41/623 (6%)

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
           + E             ++ S +     + ++   S   +       + +  +     +E+
Sbjct: 99  VTEGDSQIVYANDAYMELCSARDAAGLVTVERLFSGPADVSEAIYRLAQAARARRYHAED 158

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
             L               + +            +  +           F +      + +
Sbjct: 159 IRLAPPLTGDAEVGWYRIRVRPLKRDGGGVSNLWTVVDATADRQRQENFFQELQHAIDFL 218

Query: 327 DKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
           D  P  FF     G + Y N +      Y           LS ++               
Sbjct: 219 DHAPAGFFSAAPDGAISYMNKTLAGWLGYDLTQVGSGGVALSDIVANSGS-----TLITS 273

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
           +         A   L   + N    L +  +      Q         +          + 
Sbjct: 274 VAGGAGEVRTAQIDLDLKRRNGRT-LPVRLLHRVAFGQDGTPGASRTLVLNRAAGEEPEE 332

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            +    ++      +T   IA ++++G +  +N A +KL    ++  +  P    + +  
Sbjct: 333 DLRAAEVRFARFFNSTPMAIAAVDQDGRVTRSNAAFAKLLPLAMKGAVSWPILDGVVERD 392

Query: 506 PSVMNHYLTEILSL-DLRQTLEKITLGSTKEE-KLLSLRIIIKKLPFSSCYSLTMHDISE 563
              +   +   L      + ++     S     +         +        +   D +E
Sbjct: 393 RPALREAVAAALDNKGDVEPVDAALEDSEGRPMRSARFFAAPAEDAGGKGAMIYALDTTE 452

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            ++ +   + ++K+              V+H+    LTAIIG+S+++         +P +
Sbjct: 453 QRKLQEGFAQSQKM-----QAVGQLAGGVAHDFNNMLTAIIGYSDLLLANHRPT--DPSF 505

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            +    I ++ N    +   LL  S+    +  L  + + L + +SE   L++    EK 
Sbjct: 506 QDIIQ-IKQTANRAAGLTRQLLAFSR----RQTLRPQVLQLGDVLSELQLLLRRLVGEK- 559

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS-GGQIIISTT------------ 730
           + +      ++  + AD+  ++Q+ +N++ NA    P  GG+I + T             
Sbjct: 560 VEVDLKHGRDLWFVKADINQLEQVVINLVVNARDAMPESGGRITLRTRNIAAADCASFGE 619

Query: 731 --HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
               + E V++ V D G G+      K  +PF          G+GTGLGL +   +V  +
Sbjct: 620 ASLAATEYVLIEVEDNGSGIPADVKAKIFEPFFTTK----EVGKGTGLGLAMVFGIVKQS 675

Query: 789 MGKFYIFSTPAKGTLIEIIFPLY 811
            G  ++ S   +GT+  I+ P +
Sbjct: 676 GGFVFVDSEVGRGTVFRILLPRH 698



 Score = 40.0 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 29/303 (9%), Positives = 69/303 (22%), Gaps = 12/303 (3%)

Query: 91  AHGYLKEISEELPKTIGNYAFKM--IGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
             G +  +++ L   +G    ++   G+ L D+           +        T      
Sbjct: 230 PDGAISYMNKTLAGWLGYDLTQVGSGGVALSDIVANSGSTLITSVAGGAGEVRTAQIDLD 289

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN--RVDNDPRALGKRLDKKFSH 206
           L    G    +P+ L     + ++      R   +        + D RA   R  + F+ 
Sbjct: 290 LKRRNGRT--LPVRLLHRVAFGQDGTPGASRTLVLNRAAGEEPEEDLRAAEVRFARFFNS 347

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
                       +      +     P          + +    +D     E        +
Sbjct: 348 TPMAIAAVDQDGRVTRSNAAFAKLLPLAMKGAVSWPILDGVVERDRPALREAVAAALDNK 407

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
             +   +     +  +  +   F             + +    +      EG   + +  
Sbjct: 408 GDVEPVDAALEDSEGRPMRSARFFAAPAEDAGGKGAMIYALDTTEQRKLQEGFAQSQKM- 466

Query: 327 DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
                     + G     N     +  Y  +  +                   A +   L
Sbjct: 467 ----QAVGQLAGGVAHDFNNMLTAIIGYSDL-LLANHRPTDPSFQDIIQIKQTANRAAGL 521

Query: 387 YRS 389
            R 
Sbjct: 522 TRQ 524


>gi|255535846|ref|YP_003096217.1| Signal transduction histidine kinase [Flavobacteriaceae bacterium
           3519-10]
 gi|255342042|gb|ACU08155.1| Signal transduction histidine kinase [Flavobacteriaceae bacterium
           3519-10]
          Length = 1200

 Score =  276 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 76/236 (32%), Positives = 131/236 (55%), Gaps = 6/236 (2%)

Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
             E+ + +KS+FLA +SHE+RTPL +I+  S+++         + +Y+EYA  +  SG  
Sbjct: 525 ELEQSTKYKSEFLANMSHELRTPLNSILLLSKLMTESED---LDEQYVEYAAVMQSSGQG 581

Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696
           +L +++++LD+SKIESGKM L    V L E   +   L    A +K + ++       P+
Sbjct: 582 LLTLIDEILDLSKIESGKMTLEIMDVPLAEITDDMRMLFLPMAKDKNLELKVETEAQAPQ 641

Query: 697 IL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTT-HTSNEEVILRVRDTGVGMTNYELE 754
           +L  D   ++QI  N+LSNAI FT +G  I +  +   ++ ++I +V DTG+G+   ++ 
Sbjct: 642 MLQTDKLRLEQILKNLLSNAIKFTSTGS-ITLQVSGDEAHTKIIFKVIDTGIGIAKDKMR 700

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
              + F Q   S Q +  GTGLGL +++ +     G+  + ST  KG+   +  P+
Sbjct: 701 LVFEAFQQADGSTQRKYGGTGLGLSISRELARLLGGEITLESTEGKGSEFTLTVPV 756


>gi|260754774|ref|ZP_05867122.1| multi-sensor hybrid histidine kinase [Brucella abortus bv. 6 str.
           870]
 gi|260883793|ref|ZP_05895407.1| multi-sensor hybrid histidine kinase [Brucella abortus bv. 9 str.
           C68]
 gi|260674882|gb|EEX61703.1| multi-sensor hybrid histidine kinase [Brucella abortus bv. 6 str.
           870]
 gi|260873321|gb|EEX80390.1| multi-sensor hybrid histidine kinase [Brucella abortus bv. 9 str.
           C68]
          Length = 906

 Score =  276 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 99/626 (15%), Positives = 208/626 (33%), Gaps = 51/626 (8%)

Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271
           +G      + Y   +  +    +R  ++V +     +     L       L+++E     
Sbjct: 153 RGQIVYANQAYARMTGATDADGIRPLDQVLASEPAASDAIYRLTNAVRDGLSAQEEVRIS 212

Query: 272 QEDFHTINLNQY--TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE-----NLTPE 324
                  N +      +     L+  ++     ++ +         ++            
Sbjct: 213 GGLSRGANGSLAPVWYRIKARALEGGAEFKGALVAWQVADISEERAEQERFFQELQEAIN 272

Query: 325 TVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
            +D  P  FF     G + Y N +               +  L+ ++    ++       
Sbjct: 273 HLDHAPAGFFSANPAGRIIYLNATLAEWLGVDLTQFTPGSLTLNDIVAGSGMA------L 326

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
           +   +++      +     +      SLA+ F    +  +         I  +  +   +
Sbjct: 327 IKAVKAEPGTSRNTVIDLDLIKRNGQSLAVRFYHRVQTARDGMPGTTRTIVLDRAEGDDS 386

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG--YPVEDILRKPFTVFL 501
                   ++      +    IA ++ EG  L TN     +F      + I R+     +
Sbjct: 387 SVAQRSAEVRFTRFFNSAPMAIAAVDAEGHTLRTNARFLDIFSGVVDRDAIDRRVKLENV 446

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF----SSCYSLT 557
                    +                 T+    EE+ +   +                ++
Sbjct: 447 VHERDRETFNKALAAAFAGQASISPVDTVLPGNEERHIRFYMSPVTDLGGEAAEEAAVIS 506

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
             + +E K  +N+++ ++K+              ++H+    LTAII  S+++       
Sbjct: 507 AVETTEQKALENQMAQSQKM-----QAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNH--R 559

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
             +P + +  N I ++ N    +V  LL  S+    +  L  E + L + +++ + ++  
Sbjct: 560 ASDPSFPDIMN-IKQNANRAASLVRQLLAFSR----RQTLRPEVLDLTDVLAD-LRMLLA 613

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT------- 730
               K I ++     ++  + ADL   +Q+A+N+  NA    P GGQI + T        
Sbjct: 614 RLVGKDIELKIDHGRDLWPVKADLGQFEQVAVNLAVNARDAMPEGGQITLRTRNIPAADA 673

Query: 731 -------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
                      + V+  V DTG G+    LEK  +PF          G+GTGLGL +   
Sbjct: 674 AKLHYRDLPEADYVVFEVEDTGTGIPADVLEKIFEPFFTTK----EVGKGTGLGLSMVYG 729

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFP 809
           ++    G  Y  S   KGT  +I  P
Sbjct: 730 IIKQTGGFIYCDSEVGKGTTFKIFLP 755



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/238 (11%), Positives = 66/238 (27%), Gaps = 7/238 (2%)

Query: 319 ENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
           ++L    +D  P    +    G + YAN ++  +T     D I     +  L   P  SD
Sbjct: 133 QDLAHSFMDTQPEGTVISDPRGQIVYANQAYARMTGATDADGIRPLDQV--LASEPAASD 190

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
                   +                 +    +   + +    +A +         +  + 
Sbjct: 191 AIYRLTNAVRDGLSAQEEVRISGGLSRGANGSLAPVWYRIKARALEGGAEFKGALVAWQV 250

Query: 438 VDTRINKRKMEIEVMQLC-SI--LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
            D    + + E    +L  +I  L+    G    N  G I+  N  +++  G  +     
Sbjct: 251 ADISEERAEQERFFQELQEAINHLDHAPAGFFSANPAGRIIYLNATLAEWLGVDLTQFTP 310

Query: 495 KPFT-VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
              T   +   +   +   +           ++   +    +   +     ++     
Sbjct: 311 GSLTLNDIVAGSGMALIKAVKAEPGTSRNTVIDLDLIKRNGQSLAVRFYHRVQTARDG 368



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 47/420 (11%), Positives = 103/420 (24%), Gaps = 38/420 (9%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD--ILHIDPNNHIGDLLKRQNTWYGKT 147
           D  G +   ++   +  G      I   L  V        D    + + ++   +   + 
Sbjct: 151 DPRGQIVYANQAYARMTGATDADGI-RPLDQVLASEPAASDAIYRLTNAVRDGLSAQEEV 209

Query: 148 TL-----WPIEGTNLYVPIDLAALPIYSRNREFSGF-RGFGIVHVNRVDNDPRALGKRLD 201
            +         G+   V   + A  +     EF G    + +  ++    +     + L 
Sbjct: 210 RISGGLSRGANGSLAPVWYRIKARALEGGA-EFKGALVAWQVADISEERAEQERFFQELQ 268

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR------MKNKVSSLTEYYAHKDDVLK 255
           +  +HL     G  S       I+   +    L           ++           ++K
Sbjct: 269 EAINHLDHAPAGFFSANPAGRIIYLNATLAEWLGVDLTQFTPGSLTLNDIVAGSGMALIK 328

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN--NSKESFEYLSHRNHPSLSA 313
             K    TS  + +                     T ++          L        S 
Sbjct: 329 AVKAEPGTSRNTVIDLDLIKRNGQSLAVRFYHRVQTARDGMPGTTRTIVLDRAEGDDSSV 388

Query: 314 YFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLT-KYKSVDDIEIAGGLSTLLD 371
                E       +  P+    V + G+    N  FL +       D I+    L  +  
Sbjct: 389 AQRSAEVRFTRFFNSAPMAIAAVDAEGHTLRTNARFLDIFSGVVDRDAIDRRVKLENV-V 447

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
             +  +         +    +       L     N E  +     P              
Sbjct: 448 HERDRETFNKALAAAFAGQASISPVDTVL---PGNEERHIRFYMSPVTDLGGEAAEEAAV 504

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSI----------LEATSDGIAIINREGIILSTNRAV 481
               E  + +  + +M  +  ++ ++                 I + +    +L TN   
Sbjct: 505 ISAVETTEQKALENQM-AQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSD---LLLTNHRA 560



 Score = 48.5 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 45/134 (33%), Gaps = 12/134 (8%)

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY-LT 514
           S ++   +G  I +  G I+  N+A +++ G    D   +P    L     +    Y LT
Sbjct: 138 SFMDTQPEGTVISDPRGQIVYANQAYARMTGATDAD-GIRPLDQVLASEPAASDAIYRLT 196

Query: 515 EILSLDLRQTLEKITLG---STKEEKLLSLRIIIKKLPFSSC-------YSLTMHDISEW 564
             +   L    E    G         L  +   IK               +  + DISE 
Sbjct: 197 NAVRDGLSAQEEVRISGGLSRGANGSLAPVWYRIKARALEGGAEFKGALVAWQVADISEE 256

Query: 565 KQEKNKLSHAKKIA 578
           + E+ +     + A
Sbjct: 257 RAEQERFFQELQEA 270


>gi|260459403|ref|ZP_05807658.1| histidine kinase [Mesorhizobium opportunistum WSM2075]
 gi|259034957|gb|EEW36213.1| histidine kinase [Mesorhizobium opportunistum WSM2075]
          Length = 506

 Score =  276 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 98/253 (38%), Positives = 155/253 (61%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I+E +  K+    A++ AE  +  KS FLA +SHE+RTPL AI+GFSEV+ N+  GP+ N
Sbjct: 237 IAELETAKSMSDEARRRAEDANLAKSRFLASMSHELRTPLNAILGFSEVMANEVLGPMSN 296

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
           P Y +YA+ +  SG  +LD++N++LD+S+IE+G+  L+ EPV L   V +   +++L A 
Sbjct: 297 PTYRDYAHDVHDSGQHLLDLINEILDLSRIEAGRYQLNEEPVMLLNIVEDCCHMMELKAR 356

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
            K I +   F   +PR+ AD R+++QI LN+LSNAI FT +GG+I +    T+     + 
Sbjct: 357 NKDIRVIQDFEQTLPRLFADERALRQITLNLLSNAIKFTATGGEIRVRVGWTAGGGQYIS 416

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           ++D G G+   E+   +  FGQ   + +   +GTGLGLP+ + ++  + G+F + S   +
Sbjct: 417 IKDNGPGIPEDEIPVVLSAFGQGSIAIKSAEQGTGLGLPIVQGLLAMHGGEFELHSKLRE 476

Query: 801 GTLIEIIFPLYDT 813
           GT    IFPL   
Sbjct: 477 GTEAIAIFPLSRV 489


>gi|225562695|gb|EEH10974.1| DRK1 histidine kinase [Ajellomyces capsulatus G186AR]
          Length = 1288

 Score =  276 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 76/255 (29%), Positives = 130/255 (50%), Gaps = 12/255 (4%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           +S  +    + + A++ AE  +  KS+FLA +SHEIRTP+  IIG +++  +        
Sbjct: 684 VSNLRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDD---LK 740

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
           P   E  N +    N +L I++D+LDISKIE+ +M +   P S+   V  A+  + + AN
Sbjct: 741 PYPREMLNVVHSLANSLLTIIDDILDISKIEANRMVIEKIPFSMRGTVFNALKTLAVKAN 800

Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV-- 737
           EK + +     +++P  +  D   ++QI LN++ NAI FT  G ++ ++ + +  EE   
Sbjct: 801 EKFLSLAYQVDSSVPDYVTGDPFRLRQIILNLVGNAIKFTEHG-EVKLTISKSDREECKD 859

Query: 738 -----ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
                   V DTG+G+   +L+     F Q   S   +  GTGLGL ++K +V+   G  
Sbjct: 860 NEYAFEFSVSDTGIGIEEDKLDLIFDTFQQADGSTTRKFGGTGLGLSISKRLVNLMGGDV 919

Query: 793 YIFSTPAKGTLIEII 807
           ++ S    G+     
Sbjct: 920 WVTSEYGLGSSFHFT 934


>gi|51245370|ref|YP_065254.1| Ntr family two-component system sensory/regulatory protein
           [Desulfotalea psychrophila LSv54]
 gi|50876407|emb|CAG36247.1| related to two-component system sensory/regulatory protein (Ntr
           family) [Desulfotalea psychrophila LSv54]
          Length = 930

 Score =  276 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 89/529 (16%), Positives = 184/529 (34%), Gaps = 44/529 (8%)

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDD 359
             L  +   S +    E E    E  D   I  +      N    + S   +        
Sbjct: 285 ALLLKKTVRSRTRELAESEASLLEAQDIARIGKWELDLVTNHLSWSDSVYAMYGLSR-GA 343

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
              +         P    +   +       D    +A  RL            ++ +   
Sbjct: 344 FTASNVALFQFVHPDDH-SRVKRSYRQSVQDGEPFSAEYRLLLT---GGLIKWVSGLGRV 399

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
           + +         G   +    +  + ++    ++  +++    D   + +++G +L  N 
Sbjct: 400 EYDGEGLPARFVGTVQDITARKKTENELVKSRIKYHTLVHTAMDAFCVSDKQGALLEVNE 459

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
           A  ++ GY  E++L       +    P      L+++++L   +     +    K+    
Sbjct: 460 AYCRMCGYSAEELLSMTAYDLIA-RKPEQTAARLSKVIALGEDR---FESEHCHKDGGAF 515

Query: 540 SLRIII-KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES--SHKSDFLARVSHEI 596
            + I I  +    + +   + DI+  KQ K +  + ++   +             ++H+ 
Sbjct: 516 HVEIGIQYRPGEDAVFVAFLRDITAAKQAKEEREYLQEQLVQAQKMEAIGTLAGGIAHDF 575

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK-IESGKM 655
              L AI+G++E+ K        +         I ++ N    +V  +LD S+  +  K+
Sbjct: 576 NNVLAAILGYAELAKLNAPLSSTHE-----LEQIIKASNRAKVLVRQILDFSRQADIEKI 630

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715
           +L   P      + EA+ +++       ILI  +   +   IL D   + Q+ +N+ +N+
Sbjct: 631 SLMPGPR-----IKEALKMLRSSLPS-TILIEQNIDMDSGPILGDPTQLHQLLMNLCTNS 684

Query: 716 IHFTPS-GGQIIISTT--------------HTSNEEVILRVRDTGVGMTNYELEKAMKPF 760
            H     GG I +S                      V L +RD G G++    EK   P+
Sbjct: 685 FHAMEERGGVISVSLRKKTLSKADIGNIANVHPGPFVQLDIRDGGSGISLAIQEKIFNPY 744

Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
               +     G+GTG+GL +   +V  + G     S   +GTL  +  P
Sbjct: 745 FTTKD----VGKGTGMGLSIVHGIVKNSGGFITCESKVGEGTLFSVNLP 789



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/171 (9%), Positives = 50/171 (29%), Gaps = 8/171 (4%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D  G L E++E   +  G  A +++ M   D+           +  ++        ++  
Sbjct: 449 DKQGALLEVNEAYCRMCGYSAEELLSMTAYDLIARKPEQTAARLSKVIALGE-DRFESEH 507

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
              +G   +V I +   P                +         +   + L ++     +
Sbjct: 508 CHKDGGAFHVEIGIQYRPGED-------AVFVAFLRDITAAKQAKEEREYLQEQLVQAQK 560

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
           ++   +      +D  +  +         K+++        + ++K     
Sbjct: 561 MEAIGTLAGGIAHDFNNVLAAILGYAELAKLNAPLSSTHELEQIIKASNRA 611



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/180 (11%), Positives = 52/180 (28%), Gaps = 4/180 (2%)

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
           ++     +    +                        R   R++      L    +    
Sbjct: 256 RYESHPRIPSWLVYTVLLAAGLVFFFVGAALLLKKTVRSRTRELAESEASLLEAQDIARI 315

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKP--FTVFLEQNTPSVMNHYLTEILSLDL 521
           G   ++     LS + +V  ++G               F+  +  S +     + +    
Sbjct: 316 GKWELDLVTNHLSWSDSVYAMYGLSRGAFTASNVALFQFVHPDDHSRVKRSYRQSVQDGE 375

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAE 579
             + E   L +    K +S    ++       + +  T+ DI+  K+ +N+L  ++    
Sbjct: 376 PFSAEYRLLLTGGLIKWVSGLGRVEYDGEGLPARFVGTVQDITARKKTENELVKSRIKYH 435



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/327 (10%), Positives = 77/327 (23%), Gaps = 8/327 (2%)

Query: 63  SNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLC--D 120
           S T  L      + +         W +D        S+ +    G          +    
Sbjct: 294 SRTRELAESEASLLEAQDIARIGKWELDLVTNHLSWSDSVYAMYGLSRGAFTASNVALFQ 353

Query: 121 VSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFR 179
                            ++    +  +  L    G   +V    + L     + E    R
Sbjct: 354 FVHPDDHSRVKRSYRQSVQDGEPFSAEYRLLLTGGLIKWV----SGLGRVEYDGEGLPAR 409

Query: 180 GFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK 239
             G V              +   K+  L         V  ++  +         +   + 
Sbjct: 410 FVGTVQDITARKKTENELVKSRIKYHTLVHTAMDAFCVSDKQGALLEVNEAYCRMCGYSA 469

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
              L+            +    L+   +   ++ +    + +        G      +++
Sbjct: 470 EELLSMTAYDLIARKPEQTAARLSKVIALGEDRFESEHCHKDGGAFHVEIGIQYRPGEDA 529

Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETV-DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVD 358
                 R+  +     +E E L  + V  +        + G     N     +  Y  + 
Sbjct: 530 VFVAFLRDITAAKQAKEEREYLQEQLVQAQKMEAIGTLAGGIAHDFNNVLAAILGYAELA 589

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVM 385
            +      +  L+    + N A   V 
Sbjct: 590 KLNAPLSSTHELEQIIKASNRAKVLVR 616


>gi|86138915|ref|ZP_01057487.1| phosphate regulon sensor histidine kinase, putative [Roseobacter
           sp. MED193]
 gi|85824562|gb|EAQ44765.1| phosphate regulon sensor histidine kinase, putative [Roseobacter
           sp. MED193]
          Length = 347

 Score =  276 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 69/361 (19%), Positives = 147/361 (40%), Gaps = 30/361 (8%)

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
           LEA      ++++    +  NR   +L G   + I+ + F   L       +   + + L
Sbjct: 10  LEAMPLPSVLVDQTERFIGANRLGHELLG---DQIMGRHFATILR---QPSVAGAIEKCL 63

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF---SSCYSLTMHDISEWKQEKNKLSHA 574
                +   +       ++    + +               ++  D++E +Q        
Sbjct: 64  EDRGNRA-TRYLSNDGAQDTTYEVSLRYIAGIGAVEGGAVLISFTDVTEREQ-------- 114

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
                  +  + DF+A VSHE+RTPLTA++GF E ++              + + ++   
Sbjct: 115 ------ANQMRRDFVANVSHELRTPLTALMGFIETLRGAARDDADA--RDRFLSIMEGEA 166

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
           + +  +V DLL ++++ES +     E + L   ++  +  +Q  A+   + ++ +  +  
Sbjct: 167 SRMNRLVGDLLSLNRVESKERIRPKEELDLVAHLASTLKTMQPLADADNVSLKFTPPSEP 226

Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS----NEEVILRVRDTGVGMTN 750
             I+ D   + Q+ +N++ NAI +     ++ +             V ++V D G G+  
Sbjct: 227 VMIIGDPDQLLQVFMNLIENAIKYGGDQVEMTVELLERDPSLRTAAVRVKVMDNGAGIDP 286

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             L +  + F +  N +     GTGLGL + K +V+ + G+  + S    GT   +  PL
Sbjct: 287 IHLPRLTERFYRADNHRSREQGGTGLGLAIVKHIVNRHRGRLRVSSDLGVGTCFAVTLPL 346

Query: 811 Y 811
            
Sbjct: 347 S 347


>gi|310766624|gb|ADP11574.1| hybrid sensory histidine kinase BarA [Erwinia sp. Ejp617]
          Length = 909

 Score =  276 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 86/334 (25%), Positives = 151/334 (45%), Gaps = 19/334 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           LF Y +   +  P    +               L   +   +             +++ +
Sbjct: 193 LFAYRLMRDVTGPIRNMVSTVDR-----IRRGQLDSRVEGHMLGELDVLKNGINSMAMSL 247

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                           D+ E  ++      +L  AK+ A++ +  KS+FLA +SHE+RTP
Sbjct: 248 TAYHEEMQQNIDQATSDLRETLEQMEIQNVELDLAKRRAQEAARIKSEFLANMSHELRTP 307

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+     Q    + N    +Y + I+RS N +L I+ND+LD SK+E+GK+ L  
Sbjct: 308 LNGVIGFT----RQTLKTMLNSTQRDYLHTIERSANNLLSIINDVLDFSKLEAGKLVLET 363

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P  L   + E + L+   A+EK + +  +  +++P   + D   ++QI +N+L NAI F
Sbjct: 364 IPFPLRATLDEVVVLLAQSAHEKGLELTLNIQSDVPDNAIGDPLRMQQIIVNLLGNAIKF 423

Query: 719 TPSGGQIIISTTHTS----NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           T SG  I I     +      E+ +++ DTG+G++  +  +  + F Q   S   R  GT
Sbjct: 424 TESG-NIDIRVEKRALSNNRMELEVQIHDTGIGISEKQQSQLFQAFRQADASISRRHGGT 482

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           GLGL + + +V+   G+    S   +G+      
Sbjct: 483 GLGLVITQKLVNEMGGEISFHSRLHRGSTFWFHI 516


>gi|253572573|ref|ZP_04849975.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
 gi|251837988|gb|EES66077.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
          Length = 419

 Score =  276 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 91/383 (23%), Positives = 159/383 (41%), Gaps = 32/383 (8%)

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
            E  +L SIL+  +    +I+R+ I+ +TN     L         RK     L       
Sbjct: 37  RESNELTSILQNINVYYLLIDRDFIVHNTN--YYTLNHLTPAQGERKKVGDLLHCRNAIA 94

Query: 509 MNH---------------YLTEILSLDLRQTLEKITLGSTKEEKLL-----SLRIIIKKL 548
                                        + L+      + +EK +     S+     K+
Sbjct: 95  AGECGKHEQCKLCCIRTSISKAFYEKQDFKKLDASMKLLSADEKTVISCDVSVSGAYLKI 154

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                  LT++D++E +  +  L   ++ A      KS F+A +SHE+RTPL AI+GFS 
Sbjct: 155 NGEERMVLTVYDVTELRNMQRLLDVERENAISADKLKSAFIANMSHEVRTPLNAIVGFSG 214

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
           ++               Y + I  +   +L +VND+ D+S+I++G +N  +     ++ +
Sbjct: 215 LMA----TATSEEEKKMYTDIISENNERLLRLVNDIFDLSQIDAGVLNFVYSEFDANDLL 270

Query: 669 SEAISLVQLYANEKR-ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727
            E   L  +  NE   + +          + ++ + + Q+  N+L NA+ FT +G +I  
Sbjct: 271 RELKGLFGMRLNENPLVTLVCEAHLEPIMMHSEKQRIIQVLTNLLHNAMKFTKTG-EIRF 329

Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
                  +EV   V DTG+G+   E EK    F ++        +GTGLGL L++ +V  
Sbjct: 330 GCHMEGTDEVCFYVSDTGIGIPEEEQEKIFSRFTKLD----REMQGTGLGLTLSQIIVHN 385

Query: 788 NMGKFYIFSTPAKGTLIEIIFPL 810
             G+  + S   KG+    I PL
Sbjct: 386 LGGRCGVESEVGKGSTFWFILPL 408


>gi|253699996|ref|YP_003021185.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           M21]
 gi|251774846|gb|ACT17427.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           M21]
          Length = 551

 Score =  276 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 93/571 (16%), Positives = 200/571 (35%), Gaps = 43/571 (7%)

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
           E  P L  E    P+             +          ++             +     
Sbjct: 4   ELTPELRDELPKAPKDIPGLDPKATLLLQDLQSRLATAEAEN-------VRLRRVIESQR 56

Query: 317 EGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
             E+      +  P+    +  +G L   +  ++ +  Y+  + I        L +  + 
Sbjct: 57  CDEDGYRFLYNDTPVMLHSIDRNGLLLGVSNYWVEVLGYQREEVIGRK-STDFLTEESRR 115

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
                + P        T    +     ++ + E  L +  +   +     E +    +  
Sbjct: 116 YAEEVVLPEFFR----TGFCRNVHYQMVKKSGE-LLDVLLVASAERGPRGELLRSFAVMT 170

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
           +  + +  ++ ++    +   I+E + +GI  ++ EG I   NR  +++ G  V ++   
Sbjct: 171 DVTEWKAAEKALKESEERYRMIVETSQEGILAVDAEGRISYANRQFAEMLGLEVGEVGEV 230

Query: 496 PF---TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
                  FLE     + +    +I + +   +    T+   K    +   +    +   +
Sbjct: 231 GEVVGRFFLEFVDGCLHDDVAVKIKNRENGLSEHYETILLRKGGSRMWAGVSAIPVKGPN 290

Query: 553 C----YSLTMHDISEWKQEKNKLSHAKKIAEKES-------SHKSDFLARVSHEIRTPLT 601
                    + DI++ KQ   ++          +            F   VSH++R PLT
Sbjct: 291 GEFSGAFAMVSDITKRKQAAEEIEVLHTHLSARACELELANEELEAFSYTVSHDLRRPLT 350

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           AI GFS+V+  + +G   +P+  EY   I      +  +++ L++ S+   G+     E 
Sbjct: 351 AINGFSQVLL-ELYGSGMDPQCREYVREILNGSIRMNHLIDTLINFSRRSGGESV--REE 407

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA--DLRSVKQIALNILSNAIHFT 719
           V + E V E  + +Q    ++ + +        P +    D   ++ +  N+L NA  ++
Sbjct: 408 VEITELVEELCAELQRTEPQRNVSLLIQ-----PGVRGMADAHLLRVVLDNLLGNAWKYS 462

Query: 720 P--SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
                 +I   T     +     VRD G G      +   KPF ++ ++     EGTG+G
Sbjct: 463 AKMESSEIAFGTVDHLGKTAYF-VRDNGAGFDMALGDLLFKPFQRLHDA--RDFEGTGIG 519

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           L   + ++  + G+ +  S P KG       
Sbjct: 520 LASVQRIIQRHGGQIWAESEPGKGATFYFTL 550



 Score = 54.6 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 27/268 (10%), Positives = 65/268 (24%), Gaps = 16/268 (5%)

Query: 70  SENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP 129
            E+ + F      V    +ID +G L  +S    + +G    ++IG +  D         
Sbjct: 58  DEDGYRFLYNDTPV-MLHSIDRNGLLLGVSNYWVEVLGYQREEVIGRKSTDFLTEESRRY 116

Query: 130 NNHIG--DLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187
              +   +  +          +    G  L V +  +A        E    R F ++   
Sbjct: 117 AEEVVLPEFFRTGFCRNVHYQMVKKSGELLDVLLVASAE--RGPRGEL--LRSFAVMTDV 172

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247
                     K  ++++  + E  +        +  I         +             
Sbjct: 173 TEWKAAEKALKESEERYRMIVETSQEGILAVDAEGRISYANRQFAEMLGLEVGEVGEVGE 232

Query: 248 AHKDDVLKTEKYPLL---------TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE 298
                 L+     L               S   +        ++         ++  + E
Sbjct: 233 VVGRFFLEFVDGCLHDDVAVKIKNRENGLSEHYETILLRKGGSRMWAGVSAIPVKGPNGE 292

Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETV 326
                +  +  +      E   +    +
Sbjct: 293 FSGAFAMVSDITKRKQAAEEIEVLHTHL 320



 Score = 48.1 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 41/126 (32%), Gaps = 10/126 (7%)

Query: 89  IDAHGYLKEISEELPKT------IGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNT 142
           +DA G +   + +  +             +++G    +  D    D         +   +
Sbjct: 203 VDAEGRISYANRQFAEMLGLEVGEVGEVGEVVGRFFLEFVDGCLHDDVAVKIKNRENGLS 262

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
            + +T L    G+   +   ++A+P+   N EFSG   F +V             + L  
Sbjct: 263 EHYETILLRKGGS--RMWAGVSAIPVKGPNGEFSGA--FAMVSDITKRKQAAEEIEVLHT 318

Query: 203 KFSHLH 208
             S   
Sbjct: 319 HLSARA 324


>gi|1679757|gb|AAB19216.1| two-component histidine kinase CHK-1 [Glomerella cingulata]
 gi|1679760|gb|AAB19217.1| two-component histidine kinase CHK-1 [Colletotrichum
           gloeosporioides]
          Length = 745

 Score =  276 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 85/308 (27%), Positives = 136/308 (44%), Gaps = 31/308 (10%)

Query: 528 ITLGSTKEEKLLSLRIIIKKLP------FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE 581
                ++  +     I   ++        +S Y  +  DI++ K  + KL       ++ 
Sbjct: 55  EVRLRSRNGEYRWHLIRCVEIDNIDFGNGASSYFGSATDINDHKLLEAKL-------KEA 107

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
              KS FL+ +SHEIRTPL  I G    +++       N    +Y N I  S N +L I+
Sbjct: 108 MESKSRFLSNMSHEIRTPLIGISGMVSFLQDTTL----NEEQRDYTNTIQTSANSLLMII 163

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILAD 700
           ND+LD+SK+++G M L +E       + +   LV   A  KR+ +      ++P  +  D
Sbjct: 164 NDILDLSKVDAGMMKLKYEWFHTRSLIEDVNELVSTMAIAKRLELNYIVEEDVPAWVKGD 223

Query: 701 LRSVKQIALNILSNAIHFTPSG---GQIII-----STTHTSNEEVILRVRDTGVGMTNYE 752
              ++Q+ LN++ NAI FT  G    +  I     S        +   V DTG G T  E
Sbjct: 224 KVRIRQVLLNVIGNAIKFTAEGEVFSRCRIFTNTKSALSNDEIMLEFAVIDTGRGFTKEE 283

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII----F 808
            +   KPF QI  S   +  G+GLGL +++ +V+ + GK    + P KG+          
Sbjct: 284 ADLIFKPFSQIDGSSTRQHGGSGLGLVISRQLVELHGGKMEGTAVPGKGSTFTFTAKFAL 343

Query: 809 PLYDTSHP 816
           P     HP
Sbjct: 344 P-TSADHP 350


>gi|39997908|ref|NP_953859.1| sensory box histidine kinase [Geobacter sulfurreducens PCA]
 gi|39984853|gb|AAR36209.1| sensory box histidine kinase [Geobacter sulfurreducens PCA]
          Length = 749

 Score =  276 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 88/741 (11%), Positives = 221/741 (29%), Gaps = 55/741 (7%)

Query: 96  KEISEELPKTIGNYAFKM--IGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIE 153
              +       G    ++  +      +    H    +              +  +   +
Sbjct: 35  VFCNRATEALTGYRRDELSSLDAWFRSLFGSEHERARSRFDADRATGFPVVRREIITRKD 94

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
           G+   V +               G +   I+H      D R   +   +++  +      
Sbjct: 95  GSRRLVEV----------AGSICG-KLMCILHDITDLMDVRLQLQEHAERYRIIKSTSMD 143

Query: 214 HSSVEKEKYDIFSQQSP--PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS-EESSLP 270
              V     ++              + ++ +++ +     + ++  +  +    E+ S  
Sbjct: 144 GFWVVDLHGNVVEVNDACCHILGYSREELLTMSLHDIDATESVEETQKHIRDIVEQGSER 203

Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330
            +      +      +        +                     + E      ++   
Sbjct: 204 FEVRHRRKDGTVIDVEVSTTFQPASRCFHTFIRDISERKQTEEALRKSEERFRLAMEATT 263

Query: 331 IPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389
              + ++   +  Y +P++  +  Y+  D          LL         +     +   
Sbjct: 264 DGIWDWNIAADSGYFSPAYYRILGYEPEDFSPSFQVWMELLHPEDRERAISTNIDCV--- 320

Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449
           +       A       +      +        ++  + +   G   +  + +  +  +  
Sbjct: 321 EGRTQGFQAEFRMKAKDGSWRWILGRGSAVNRDRRGKALRLIGTHQDITERKTAEEALRN 380

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTN--RAVS--KLFGYPVEDILRKPFT-VFLEQN 504
               L    EA   G      +  I+  N   +    ++FG          F    +   
Sbjct: 381 REWLLR---EAQRIGCLGT-YDYDIVHDNWECSAELDRIFGIHTATPKNLEFWLDLIHPE 436

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHD 560
               M  Y   +L+      +E   +    + +   +    +    +         T+ D
Sbjct: 437 FREKMKDYFASLLTERTWFNMEYKII-RPSDGQERWVYGTGEFTRDNEGRPVRMIGTIQD 495

Query: 561 ISEWKQEKNKLSHAKKIAEK-----------ESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
           I+E KQ +  +    +  ++               +  F   VSH++R PL  I  +S +
Sbjct: 496 ITERKQTEETIGKLNRELDRRVMERTGQLEEAIREQESFSYSVSHDLRAPLRHINSYSNL 555

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           +       +       Y   I  +   +  +++DLL++S++  G++ L    V+L +  +
Sbjct: 556 VIEDYSDQIPVE-ARYYLERICTASGKMGQLIDDLLELSRV--GRVELRKGTVNLSKNAA 612

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
              S++Q     +   +    A ++    AD   ++Q+ LN++ NA+ +T    +  I  
Sbjct: 613 SVASMLQETEPYR--AVDWVIAGDL-TAQADRTLIRQVLLNLMGNALKYTAKTSRARIEI 669

Query: 730 THTS-NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                + E +  VRD G G     + K  +PF ++         GTG+GL   + ++  +
Sbjct: 670 GSAVIDGETVFFVRDNGAGFDMAYVNKLFRPFQRLHGG---EFPGTGIGLATVQRIIQRH 726

Query: 789 MGKFYIFSTPAKGTLIEIIFP 809
            G+ +       G       P
Sbjct: 727 GGRVWAEGKVNGGATFYFSLP 747



 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 37/279 (13%), Positives = 83/279 (29%), Gaps = 17/279 (6%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
               +      +     VD  P P  +       + N +   LT Y+  +   +     +
Sbjct: 3   TEAPSRDIADLSTLTAVVDCMPAPALLIEDER-VFCNRATEALTGYRRDELSSLDAWFRS 61

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
           L  +      +            T      R    + +    L                 
Sbjct: 62  LFGSEHERARSRFDADRA-----TGFPVVRREIITRKDGSRRLVEVAGSICGK------- 109

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
               I  +  D    + +++    +   I   + DG  +++  G ++  N A   + GY 
Sbjct: 110 -LMCILHDITDLMDVRLQLQEHAERYRIIKSTSMDGFWVVDLHGNVVEVNDACCHILGYS 168

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            E++L           +      ++ +I+     +          K+  ++ + +     
Sbjct: 169 REELLTMSLHDIDATESVEETQKHIRDIVEQGSER---FEVRHRRKDGTVIDVEVSTTFQ 225

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
           P S C+   + DISE KQ +  L  +++         +D
Sbjct: 226 PASRCFHTFIRDISERKQTEEALRKSEERFRLAMEATTD 264



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 31/387 (8%), Positives = 100/387 (25%), Gaps = 27/387 (6%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK 146
           W +D HG + E+++     +G    +++ M L D+     ++        +  Q +   +
Sbjct: 146 WVVDLHGNVVEVNDACCHILGYSREELLTMSLHDIDATESVEETQKHIRDIVEQGSERFE 205

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                 +GT + V +     P    +R F  F     +             ++ +++F  
Sbjct: 206 VRHRRKDGTVIDVEVSTTFQP---ASRCFHTF-----IRDISERKQTEEALRKSEERFRL 257

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSP-------PPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
             E             D               P     +    +   +    +   +   
Sbjct: 258 AMEATTDGIWDWNIAADSGYFSPAYYRILGYEPEDFSPSFQVWMELLHPEDRERAISTNI 317

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL-QNNSKESFEYLSHRNHPSLSAYFDEG 318
             +         +      + +          + ++   ++   +      +     +E 
Sbjct: 318 DCVEGRTQGFQAEFRMKAKDGSWRWILGRGSAVNRDRRGKALRLIGTHQDITERKTAEEA 377

Query: 319 ENLTPETVDKCPIPFFVYSHG-NLFYAN----PSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
                  + +      + ++  ++ + N         +    +     +   L   L  P
Sbjct: 378 LRNREWLLREAQRIGCLGTYDYDIVHDNWECSAELDRIFGIHTATPKNLEFWLD--LIHP 435

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
           +  +        L          +     I+ +      +        +     +   G 
Sbjct: 436 EFREKMKDYFASLLT---ERTWFNMEYKIIRPSDGQERWVYGTGEFTRDNEGRPVRMIGT 492

Query: 434 EPEDVDTRINKRKMEIEVMQL-CSILE 459
             +  + +  +  +     +L   ++E
Sbjct: 493 IQDITERKQTEETIGKLNRELDRRVME 519


>gi|332344198|gb|AEE57532.1| sensor protein EvgS [Escherichia coli UMNK88]
          Length = 1127

 Score =  276 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 91/419 (21%), Positives = 164/419 (39%), Gaps = 12/419 (2%)

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
            W+  +                  +    +       ++ +  +E ++    ++ ++  +
Sbjct: 458 TWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISFRKALSDSLPN 517

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--NTPSVMNHYLTEILSLDL 521
              ++N +G ++S N A    F          P         +  S  +    E      
Sbjct: 518 PTYVVNWQGNVISHNSAFEHYFTADYYKNAMLPLENSDSPFKDVFSNAHEVTAETKENRT 577

Query: 522 RQTLEKIT-LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
             T       G  K        +       ++ Y     DI+E +   N L   K  A K
Sbjct: 578 IYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLINALEVEKNKAIK 637

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            +  KS FLA +SHEIRTP+++I+GF E++       L   + +E  +    +G  +L +
Sbjct: 638 ATVAKSQFLATMSHEIRTPISSIMGFLELLS---GSGLSKEQRVEAISLAYATGQSLLGL 694

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILA 699
           + ++LD+ KIESG   L  + V +   V          A  K I +  S        +  
Sbjct: 695 IGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPEHYLVKI 754

Query: 700 DLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMTNYELEKA 756
           D ++ KQ+  N+LSNA+ FT  G  +I  S  H  +   ++   + D+G G++  E ++ 
Sbjct: 755 DPQAFKQVLSNLLSNALKFTTEGAVKITTSLGHIDDNHAVIKMTIMDSGSGLSQEEQQQL 814

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            K + Q   S   +  G+GLGL + K ++    G   + S P  GT   I  P+  +  
Sbjct: 815 FKRYSQT--SAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVEISQQ 871


>gi|323970930|gb|EGB66181.1| response regulator receiver domain-containing protein [Escherichia
           coli TA007]
          Length = 1127

 Score =  276 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 91/419 (21%), Positives = 164/419 (39%), Gaps = 12/419 (2%)

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
            W+  +                  +    +       ++ +  +E ++    ++ ++  +
Sbjct: 458 TWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISFRKALSDSLPN 517

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--NTPSVMNHYLTEILSLDL 521
              ++N +G ++S N A    F          P         +  S  +    E      
Sbjct: 518 PTYVVNWQGNVISHNSAFEHYFTADYYKNAMLPLENSDSPFKDVFSNAHEVTAETKENRT 577

Query: 522 RQTLEKIT-LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
             T       G  K        +       ++ Y     DI+E +   N L   K  A K
Sbjct: 578 IYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLINALEVEKNKAIK 637

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            +  KS FLA +SHEIRTP+++I+GF E++       L   + +E  +    +G  +L +
Sbjct: 638 ATVAKSQFLATMSHEIRTPISSIMGFLELLS---GSGLSKEQRVEAISLAYATGQSLLGL 694

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILA 699
           + ++LD+ KIESG   L  + V +   V          A  K I +  S        +  
Sbjct: 695 IGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPEHYLVKI 754

Query: 700 DLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMTNYELEKA 756
           D ++ KQ+  N+LSNA+ FT  G  +I  S  H  +   ++   + D+G G++  E ++ 
Sbjct: 755 DPQAFKQVLSNLLSNALKFTTEGAVKITTSLGHIDDNHAVIKMTIMDSGSGLSQEEQQQL 814

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            K + Q   S   +  G+GLGL + K ++    G   + S P  GT   I  P+  +  
Sbjct: 815 FKRYSQT--SAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVEISQQ 871


>gi|331642996|ref|ZP_08344131.1| sensor protein EvgS [Escherichia coli H736]
 gi|323961434|gb|EGB57045.1| response regulator receiver domain-containing protein [Escherichia
           coli H489]
 gi|331039794|gb|EGI12014.1| sensor protein EvgS [Escherichia coli H736]
          Length = 1127

 Score =  276 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 91/419 (21%), Positives = 164/419 (39%), Gaps = 12/419 (2%)

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
            W+  +                  +    +       ++ +  +E ++    ++ ++  +
Sbjct: 458 TWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISFRKALSDSLPN 517

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--NTPSVMNHYLTEILSLDL 521
              ++N +G ++S N A    F          P         +  S  +    E      
Sbjct: 518 PTYVVNWQGNVISHNSAFEHYFTADYYKNAMLPLENSDSPFKDVFSNAHEVTAETKENRT 577

Query: 522 RQTLEKIT-LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
             T       G  K        +       ++ Y     DI+E +   N L   K  A K
Sbjct: 578 IYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLINALEVEKNKAIK 637

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            +  KS FLA +SHEIRTP+++I+GF E++       L   + +E  +    +G  +L +
Sbjct: 638 ATVAKSQFLATMSHEIRTPISSIMGFLELLS---GSGLSKEQRVEAISLAYATGQSLLGL 694

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILA 699
           + ++LD+ KIESG   L  + V +   V          A  K I +  S        +  
Sbjct: 695 IGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPEHYLVKI 754

Query: 700 DLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMTNYELEKA 756
           D ++ KQ+  N+LSNA+ FT  G  +I  S  H  +   ++   + D+G G++  E ++ 
Sbjct: 755 DPQAFKQVLSNLLSNALKFTTEGAVKITTSLGHIDDNHAVIKMTIMDSGSGLSQEEQQQL 814

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            K + Q   S   +  G+GLGL + K ++    G   + S P  GT   I  P+  +  
Sbjct: 815 FKRYSQT--SAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVEISQQ 871


>gi|323936532|gb|EGB32820.1| response regulator receiver domain-containing protein [Escherichia
           coli E1520]
          Length = 1180

 Score =  276 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 91/419 (21%), Positives = 164/419 (39%), Gaps = 12/419 (2%)

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
            W+  +                  +    +       ++ +  +E ++    ++ ++  +
Sbjct: 511 TWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISFRKALSDSLPN 570

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--NTPSVMNHYLTEILSLDL 521
              ++N +G ++S N A    F          P         +  S  +    E      
Sbjct: 571 PTYVVNWQGNVISHNSAFEHYFTADYYKNAMLPLENSDSPFKDVFSNAHEVTAETKENRT 630

Query: 522 RQTLEKIT-LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
             T       G  K        +       ++ Y     DI+E +   N L   K  A K
Sbjct: 631 IYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLINALEVEKNKAIK 690

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            +  KS FLA +SHEIRTP+++I+GF E++       L   + +E  +    +G  +L +
Sbjct: 691 ATVAKSQFLATMSHEIRTPISSIMGFLELLS---GSGLSKEQRVEAISLAYATGQSLLGL 747

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILA 699
           + ++LD+ KIESG   L  + V +   V          A  K I +  S        +  
Sbjct: 748 IGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPEHYLVKI 807

Query: 700 DLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMTNYELEKA 756
           D ++ KQ+  N+LSNA+ FT  G  +I  S  H  +   ++   + D+G G++  E ++ 
Sbjct: 808 DPQAFKQVLSNLLSNALKFTTEGAVKITTSLGHIDDNHAVIKMTIMDSGSGLSQEEQQQL 867

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            K + Q   S   +  G+GLGL + K ++    G   + S P  GT   I  P+  +  
Sbjct: 868 FKRYSQT--SAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVEISQQ 924


>gi|309702664|emb|CBJ01993.1| putative hybrid sensory histidine kinase in two-component
           regulatory system [Escherichia coli ETEC H10407]
          Length = 1197

 Score =  276 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 91/419 (21%), Positives = 164/419 (39%), Gaps = 12/419 (2%)

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
            W+  +                  +    +       ++ +  +E ++    ++ ++  +
Sbjct: 528 TWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISFRKALSDSLPN 587

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--NTPSVMNHYLTEILSLDL 521
              ++N +G ++S N A    F          P         +  S  +    E      
Sbjct: 588 PTYVVNWQGNVISHNSAFEHYFTADYYKNAMLPLENSDSPFKDVFSNAHEVTAETKENRT 647

Query: 522 RQTLEKIT-LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
             T       G  K        +       ++ Y     DI+E +   N L   K  A K
Sbjct: 648 IYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLINALEVEKNKAIK 707

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            +  KS FLA +SHEIRTP+++I+GF E++       L   + +E  +    +G  +L +
Sbjct: 708 ATVAKSQFLATMSHEIRTPISSIMGFLELLS---GSGLSKEQRVEAISLAYATGQSLLGL 764

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILA 699
           + ++LD+ KIESG   L  + V +   V          A  K I +  S        +  
Sbjct: 765 IGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPEHYLVKI 824

Query: 700 DLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMTNYELEKA 756
           D ++ KQ+  N+LSNA+ FT  G  +I  S  H  +   ++   + D+G G++  E ++ 
Sbjct: 825 DPQAFKQVLSNLLSNALKFTTEGAVKITTSLGHIDDNHAVIKMTIMDSGSGLSQEEQQQL 884

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            K + Q   S   +  G+GLGL + K ++    G   + S P  GT   I  P+  +  
Sbjct: 885 FKRYSQT--SAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVEISQQ 941


>gi|301023646|ref|ZP_07187402.1| response regulator receiver domain protein [Escherichia coli MS
           196-1]
 gi|299880747|gb|EFI88958.1| response regulator receiver domain protein [Escherichia coli MS
           196-1]
          Length = 1139

 Score =  276 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 91/419 (21%), Positives = 164/419 (39%), Gaps = 12/419 (2%)

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
            W+  +                  +    +       ++ +  +E ++    ++ ++  +
Sbjct: 470 TWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISFRKALSDSLPN 529

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--NTPSVMNHYLTEILSLDL 521
              ++N +G ++S N A    F          P         +  S  +    E      
Sbjct: 530 PTYVVNWQGNVISHNSAFEHYFTADYYKNAMLPLENSDSPFKDVFSNAHEVTAETKENRT 589

Query: 522 RQTLEKIT-LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
             T       G  K        +       ++ Y     DI+E +   N L   K  A K
Sbjct: 590 IYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLINALEVEKNKAIK 649

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            +  KS FLA +SHEIRTP+++I+GF E++       L   + +E  +    +G  +L +
Sbjct: 650 ATVAKSQFLATMSHEIRTPISSIMGFLELLS---GSGLSKEQRVEAISLAYATGQSLLGL 706

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILA 699
           + ++LD+ KIESG   L  + V +   V          A  K I +  S        +  
Sbjct: 707 IGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPEHYLVKI 766

Query: 700 DLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMTNYELEKA 756
           D ++ KQ+  N+LSNA+ FT  G  +I  S  H  +   ++   + D+G G++  E ++ 
Sbjct: 767 DPQAFKQVLSNLLSNALKFTTEGAVKITTSLGHIDDNHAVIKMTIMDSGSGLSQEEQQQL 826

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            K + Q   S   +  G+GLGL + K ++    G   + S P  GT   I  P+  +  
Sbjct: 827 FKRYSQT--SAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVEISQQ 883


>gi|289669452|ref|ZP_06490527.1| two-component system sensor protein [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 769

 Score =  276 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 71/250 (28%), Positives = 120/250 (48%), Gaps = 10/250 (4%)

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + + +L  AK+ AE  +  K +FLA +SHEIRTPL  II   E+I + +          +
Sbjct: 92  ELEQELLRAKQTAEAATLAKGEFLATMSHEIRTPLNGIIPMLELISSGQLSL----DQRD 147

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
                  S   +L IV+D+LD SK+E+ K+ L     +L E +   + L+Q  A  +++ 
Sbjct: 148 MLQTATGSSLQLLRIVDDILDYSKLEANKLELEITTFNLRELLDGVVQLLQRTAEGRQLR 207

Query: 686 IRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH----TSNEEVILR 740
           +      ++   +  D   ++Q+  N++ NAI FT  G  + I         +   +  +
Sbjct: 208 LSLDIEPSVRLLVRGDPIRLRQVLGNLIGNAIKFTERGS-VDIQLRRLGETRAQHLLRFQ 266

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           VRDTG+G+   +  +  + F Q   S      GTGLGL + K ++D   G+  + S P +
Sbjct: 267 VRDTGIGIAPDQQARLFRSFAQADASTTRLYGGTGLGLAICKRIIDLMGGRIGVESEPGR 326

Query: 801 GTLIEIIFPL 810
           G+      PL
Sbjct: 327 GSTFWFEIPL 336


>gi|238901539|ref|YP_002927335.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Escherichia coli BW2952]
 gi|238861440|gb|ACR63438.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Escherichia coli BW2952]
 gi|260448539|gb|ACX38961.1| Hpt sensor hybrid histidine kinase [Escherichia coli DH1]
 gi|315137006|dbj|BAJ44165.1| hybrid sensory kinase in two-component regulatory system
           [Escherichia coli DH1]
          Length = 1197

 Score =  276 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 91/419 (21%), Positives = 164/419 (39%), Gaps = 12/419 (2%)

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
            W+  +                  +    +       ++ +  +E ++    ++ ++  +
Sbjct: 528 TWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISFRKALSDSLPN 587

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--NTPSVMNHYLTEILSLDL 521
              ++N +G ++S N A    F          P         +  S  +    E      
Sbjct: 588 PTYVVNWQGNVISHNSAFEHYFTADYYKNAMLPLENSDSPFKDVFSNAHEVTAETKENRT 647

Query: 522 RQTLEKIT-LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
             T       G  K        +       ++ Y     DI+E +   N L   K  A K
Sbjct: 648 IYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLINALEVEKNKAIK 707

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            +  KS FLA +SHEIRTP+++I+GF E++       L   + +E  +    +G  +L +
Sbjct: 708 ATVAKSQFLATMSHEIRTPISSIMGFLELLS---GSGLSKEQRVEAISLAYATGQSLLGL 764

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILA 699
           + ++LD+ KIESG   L  + V +   V          A  K I +  S        +  
Sbjct: 765 IGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPEHYLVKI 824

Query: 700 DLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMTNYELEKA 756
           D ++ KQ+  N+LSNA+ FT  G  +I  S  H  +   ++   + D+G G++  E ++ 
Sbjct: 825 DPQAFKQVLSNLLSNALKFTTEGAVKITTSLGHIDDNHAVIKMTIMDSGSGLSQEEQQQL 884

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            K + Q   S   +  G+GLGL + K ++    G   + S P  GT   I  P+  +  
Sbjct: 885 FKRYSQT--SAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVEISQQ 941


>gi|194436363|ref|ZP_03068465.1| sensor histidine kinase/response regulator EvgS [Escherichia coli
           101-1]
 gi|194425091|gb|EDX41076.1| sensor histidine kinase/response regulator EvgS [Escherichia coli
           101-1]
          Length = 1197

 Score =  276 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 91/419 (21%), Positives = 164/419 (39%), Gaps = 12/419 (2%)

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
            W+  +                  +    +       ++ +  +E ++    ++ ++  +
Sbjct: 528 TWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISFRKALSDSLPN 587

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--NTPSVMNHYLTEILSLDL 521
              ++N +G ++S N A    F          P         +  S  +    E      
Sbjct: 588 PTYVVNWQGNVISHNSAFEHYFTADYYKNAMLPLENSDSPFKDVFSNAHEVTAETKENRT 647

Query: 522 RQTLEKIT-LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
             T       G  K        +       ++ Y     DI+E +   N L   K  A K
Sbjct: 648 IYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLINALEVEKNKAIK 707

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            +  KS FLA +SHEIRTP+++I+GF E++       L   + +E  +    +G  +L +
Sbjct: 708 ATVAKSQFLATMSHEIRTPISSIMGFLELLS---GSGLSKEQRVEAISLAYATGQSLLGL 764

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILA 699
           + ++LD+ KIESG   L  + V +   V          A  K I +  S        +  
Sbjct: 765 IGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPEHYLVKI 824

Query: 700 DLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMTNYELEKA 756
           D ++ KQ+  N+LSNA+ FT  G  +I  S  H  +   ++   + D+G G++  E ++ 
Sbjct: 825 DPQAFKQVLSNLLSNALKFTTEGAVKITTSLGHIDDNHAVIKMTIMDSGSGLSQEEQQQL 884

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            K + Q   S   +  G+GLGL + K ++    G   + S P  GT   I  P+  +  
Sbjct: 885 FKRYSQT--SAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVEISQQ 941


>gi|110598715|ref|ZP_01386978.1| ATP-binding region, ATPase-like:Histidine kinase, HAMP
           region:Histidine kinase A-like [Chlorobium ferrooxidans
           DSM 13031]
 gi|110339660|gb|EAT58172.1| ATP-binding region, ATPase-like:Histidine kinase, HAMP
           region:Histidine kinase A-like [Chlorobium ferrooxidans
           DSM 13031]
          Length = 604

 Score =  276 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 80/375 (21%), Positives = 157/375 (41%), Gaps = 26/375 (6%)

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
            + +   +         + +A    IA++++ G I  +  +    FG      +      
Sbjct: 254 RKTDMDTLLRTRSATQEVFKALPVPIAVLDQNGEIEVSTESAENYFGLKPGVNV-----H 308

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH 559
            L     + +     +          ++         +   L    + +P  +  +L + 
Sbjct: 309 DLGHEWMTELLQNKEKQEYGGDTLGNKRYIQHFAGNRESFFL---PQAVPVPAGTALILR 365

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           D+++                ++   K   +A VSH++RTPLT++     ++  +R G L 
Sbjct: 366 DVTQ--------------IIEQLELKRSVIATVSHQLRTPLTSLRMSIYLLLEERIGTL- 410

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
           N +  E           +  I++DLLD+++IESGK +L+ +P S     +E +      A
Sbjct: 411 NSKQAELLLAAREESERLSHILDDLLDLNRIESGKAHLNIQPASPFRLATEGVDPFTAEA 470

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
            +KR+ +  +    +  ++AD   ++ +  N+LSNA+ FTP  G I +S      + V  
Sbjct: 471 RDKRVNLVNTVPEGVSEVMADPERIRHVFANLLSNALRFTPPDGSITVS-ACEDEDNVRF 529

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V ++G G+ +  LE   + F ++P   Q    G GLGL + K +V+A+ G     S P 
Sbjct: 530 SVANSGEGIASEHLEHLFEQFYRVPG--QRDESGIGLGLSIVKEIVEAHGGTVGAESNPG 587

Query: 800 KGTLIEIIFPLYDTS 814
            G++     P++  S
Sbjct: 588 TGSIFYFTLPVFSPS 602


>gi|83816430|ref|YP_444297.1| putative redox sensing protein [Salinibacter ruber DSM 13855]
 gi|83757824|gb|ABC45937.1| putative redox sensing protein [Salinibacter ruber DSM 13855]
          Length = 1668

 Score =  276 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 122/804 (15%), Positives = 244/804 (30%), Gaps = 88/804 (10%)

Query: 90   DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTT 148
            D    L   ++ + +  G     + GM           +   + I D     +       
Sbjct: 870  DEEAKLTRWNDRVVEVTGYADEALGGMEALGFVPEEERERVASQIADGFMTGHAKMDIPL 929

Query: 149  LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                +GT   VP ++A   +  R  E  GFR   I          +   +R +  F    
Sbjct: 930  R-RADGTT--VPYEIAGNLV-DRPGE--GFRVVCIGRDITARRRRKQRLERQNDLFERAQ 983

Query: 209  EIKKGHSSVEKEKYD--IFSQQSPPPHLRMKNKVSSLTEYYA---HKDDVLKTEKYPLLT 263
            EI    +     + +  + + Q+   H    ++  +  +  A     D       +    
Sbjct: 984  EIANVGAWEYDVRKERSVLTDQACRIHGISPDRDLTPEQSLAFYHPDDRDAVAAAFRRAV 1043

Query: 264  SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE-----------------YLSHR 306
             E      +    T    +   +       + S                           
Sbjct: 1044 EEGVPYDMEVRLMTQEGEERWVRTRGEPQLDTSAAEAANGDASKGQDSSQGEIVRVRGTV 1103

Query: 307  NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN--------LFYANPSFLLLTKYKSVD 358
               +                       F+    +        +   NP++   T   +  
Sbjct: 1104 QDITERRERRRELEQADTMFRGAQDALFLIDVDHAGGEPSFAIEKLNPAYEEATGMSAAS 1163

Query: 359  DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD---RTCIAASARLHTIQWNRENSLAMTF 415
             +     +  + D          +  +           I     +   +      L    
Sbjct: 1164 -VRGKTPVEAIGDEAGRFREARYQKCLDQEKPLEYEEEIPLEGEMTYWETRITPVLVGGT 1222

Query: 416  IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS----------------ILE 459
                  +       +   +      +  +   E     L +                  +
Sbjct: 1223 AEKIVGSTREVTGRKQREQFRRQRRQKVEALYEATNQLLRAEGKEAVGALLVDLVDETFD 1282

Query: 460  ATSDGIAIINREGIIL--STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
                 +    ++G ++  S + A+      P            + ++  +        + 
Sbjct: 1283 FAGTAV-RFAKDGRLVPTSVSPALQA--HMPERQSYNFDEETPVAESYRTGQTQVYHNLR 1339

Query: 518  SLDLRQ-TLEKITLGSTKEEKLLSLRIIIKKLPF----SSCYSLTMHD-----------I 561
              D      +          +  +L +  +++             + D            
Sbjct: 1340 EGDSAVNRGDIRAAAYVPMGRHGTLSVGSRRVGGIDSFDRRLVEVIADYATLVLGRVDRE 1399

Query: 562  SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
            +  +  K +   A++ AE  S  KS FLA +SHEIRTPLT+I+GF+E I  +  G     
Sbjct: 1400 AVLRGAKEEAERARQEAEAASQAKSVFLANMSHEIRTPLTSILGFAEAIGEEVGGDDQTE 1459

Query: 622  R----------YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
            +            ++A  I+ SG  +++ +  +L++SK+E+G+MNL  EPV L     +A
Sbjct: 1460 KTDRSDVDLPALRQFAALIESSGERLMNTLTGVLNLSKLEAGEMNLAPEPVDLAAEAEKA 1519

Query: 672  ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
            +      A +  + +      +     AD   V+ +  N+LSNA+ +T  GG + +S   
Sbjct: 1520 VQEFDPQARDAGVDLAAEGGQDAVWARADEGGVQIVLRNLLSNAVKYTGEGGAVRVSART 1579

Query: 732  TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
               ++ +L V DTG+GM   ++E   +PF Q         EGTGLGL +    +    G 
Sbjct: 1580 DGKQDAVLEVVDTGIGMDPAQVEDLFEPFRQESEGLAREYEGTGLGLAVTWKALQQMEGG 1639

Query: 792  FYIFSTPAKGTLIEIIFPLYDTSH 815
              + +   +GT   +  P     +
Sbjct: 1640 VEVETEKGEGTCFTVRLPAARVEN 1663



 Score =  186 bits (471), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 49/510 (9%), Positives = 130/510 (25%), Gaps = 27/510 (5%)

Query: 94  YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGKTTLWPI 152
            +   +E      G    +++G     +      +     +   L+    W G+T  +  
Sbjct: 370 RIVYANEAFEAMTGYREGEVLGRTPRVLQGPETDEAVLGSLRAALEAGERWQGETVNYRK 429

Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212
           +GT     +     P+     E   +    +      + +     +R          +  
Sbjct: 430 DGTPYV--VQWNVAPVTGEGGEIQHW--VSVQRDVTEEREREEQLRRQKGLLEQTQRLAG 485

Query: 213 GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY-----YAHKDDVLKTEKYPLLTSEES 267
                   +    +       +       +LT       +A +      E +       +
Sbjct: 486 A--WEVDVETGEGTGSEAFYQILEMEGEPALTAEKGFQFFAPEARPQVREAFERCVETGT 543

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE--- 324
               +    T   ++   +   G  + +  E  +        +     +E    + E   
Sbjct: 544 PYDLELPVVTAEGHRRWVRTVGGPSETSEGEVTKVAGALQDITPRKETEEKLRRSREQLS 603

Query: 325 -TVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
             V+   +  + +      + + N  +  +  Y   +          L+    L     +
Sbjct: 604 MAVEGGNVGTWNWDLETDEVIF-NRRWAEMLGYSREELDFDFSTWEALVHPEDLPRALQM 662

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
               +     T       +     +       T     + +         GI  +  + +
Sbjct: 663 LETYIEGDAGTYDP---EIRMRTKSGGWKWIQTIGRVVERDGEGAVTRAAGIHLDIDERK 719

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
             + +++    +  S+ E +S  I + + EG I   N     LFG     +         
Sbjct: 720 RAEAELQRSRERYRSLFEDSSSAILVHDLEGRIQEANPQAESLFGRSTGALEGLSVRDLH 779

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL--TMH 559
                 V       +      Q + +       +       +                + 
Sbjct: 780 PSGESEVATEKRAALRDGAAYQAVAR---YERADGSAFWGEVSASVTEIGGRAVARTLIQ 836

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
           D++E  + + KL H ++  ++      D  
Sbjct: 837 DVTERVRSRKKLEHYREYTDRLLDAIDDLF 866



 Score =  120 bits (301), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 54/516 (10%), Positives = 128/516 (24%), Gaps = 37/516 (7%)

Query: 87  WNID---AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTW 143
           W +D     G   E   ++ +  G  A           +              ++    +
Sbjct: 487 WEVDVETGEGTGSEAFYQILEMEGEPALTA-EKGFQFFAPEARPQVREAFERCVETGTPY 545

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +  +   EG      +     P  +   E +   G   +       +     +R  ++
Sbjct: 546 DLELPVVTAEGH--RRWVRTVGGPSETSEGEVTKVAG--ALQDITPRKETEEKLRRSREQ 601

Query: 204 FSHLHEIKKGHSSVEK-EKYDIFSQQSPPPHLRMKNKVSSL---TEYYAHKDDVLKTEKY 259
            S   E     +     E  ++   +     L    +       T       + L     
Sbjct: 602 LSMAVEGGNVGTWNWDLETDEVIFNRRWAEMLGYSREELDFDFSTWEALVHPEDLPRALQ 661

Query: 260 PLLTSEESSLPEQE---DFHTINLNQYTKKQYFGTLQNN-----SKESFEYLSHRNHPSL 311
            L T  E      +      T +      +     ++ +     ++ +  +L        
Sbjct: 662 MLETYIEGDAGTYDPEIRMRTKSGGWKWIQTIGRVVERDGEGAVTRAAGIHLDIDERKRA 721

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
            A             +       V+   G +  ANP    L    +       G L  L 
Sbjct: 722 EAELQRSRERYRSLFEDSSSAILVHDLEGRIQEANPQAESLFGRST-------GALEGLS 774

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
                    +        + R   A  A     + +             +          
Sbjct: 775 VRDLHPSGESEVATEKRAALRDGAAYQAVARYERADGSAFWGEVSASVTEIGGRAVART- 833

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490
             +  +  +   +++K+E        +L+A  D   + + E  +   N  V ++ GY  E
Sbjct: 834 --LIQDVTERVRSRKKLEHYREYTDRLLDAIDDLFLVFDEEAKLTRWNDRVVEVTGYADE 891

Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII---IKK 547
            +       F+ +     +   + +       +           +   +   I    + +
Sbjct: 892 ALGGMEALGFVPEEERERVASQIADGFMTGHAKM---DIPLRRADGTTVPYEIAGNLVDR 948

Query: 548 LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
                       DI+  ++ K +L     + E+   
Sbjct: 949 PGEGFRVVCIGRDITARRRRKQRLERQNDLFERAQE 984



 Score =  102 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 56/547 (10%), Positives = 136/547 (24%), Gaps = 60/547 (10%)

Query: 86   TWNIDAHGYLKEISEELPKTIGNYAFKM--IGMRLCDVSDILHIDPNNHIGDLLKRQNTW 143
            TWN D        +    + +G    ++         +     +     + +     +  
Sbjct: 613  TWNWDLETDEVIFNRRWAEMLGYSREELDFDFSTWEALVHPEDLPRALQMLETYIEGDAG 672

Query: 144  YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                 +     +  +  I      +  R+ E +  R  GI           A  +R  ++
Sbjct: 673  TYDPEIRMRTKSGGWKWIQTIGR-VVERDGEGAVTRAAGIHLDIDERKRAEAELQRSRER 731

Query: 204  FSHLHEIKKGHSSVEKEKYDIFSQQ---SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
            +  L E       V   +  I                              +     +  
Sbjct: 732  YRSLFEDSSSAILVHDLEGRIQEANPQAESLFGRSTGALEGLSVRDLHPSGESEVATEKR 791

Query: 261  LLTSEESSLPEQEDFHTINLNQYTKK--QYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
                + ++      +   + + +  +       +   +                   +  
Sbjct: 792  AALRDGAAYQAVARYERADGSAFWGEVSASVTEIGGRAVARTLIQDVTERVRSRKKLEHY 851

Query: 319  ENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSV-----DDIEIAGGLSTLLDA 372
               T   +D     F V+     L   N   + +T Y        + +           A
Sbjct: 852  REYTDRLLDAIDDLFLVFDEEAKLTRWNDRVVEVTGYADEALGGMEALGFVPEEERERVA 911

Query: 373  PKLSD----NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF-IPFEKANQFPEN 427
             +++D     +A   + L R+D T +      + +    E    +          +  + 
Sbjct: 912  SQIADGFMTGHAKMDIPLRRADGTTVPYEIAGNLVDRPGEGFRVVCIGRDITARRRRKQR 971

Query: 428  MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
            + +     E      N    E +V +  S+L                        ++ G 
Sbjct: 972  LERQNDLFERAQEIANVGAWEYDVRKERSVLT-------------------DQACRIHGI 1012

Query: 488  PVE-DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
              + D+  +    F   +    +       +   +   +E   +    EE+ +  R   +
Sbjct: 1013 SPDRDLTPEQSLAFYHPDDRDAVAAAFRRAVEEGVPYDMEVRLMTQEGEERWVRTRGEPQ 1072

Query: 547  KLPFSS-------------------CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
                ++                       T+ DI+E ++ + +L  A  +          
Sbjct: 1073 LDTSAAEAANGDASKGQDSSQGEIVRVRGTVQDITERRERRRELEQADTMFRGAQDAL-- 1130

Query: 588  FLARVSH 594
            FL  V H
Sbjct: 1131 FLIDVDH 1137



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 40/351 (11%), Positives = 97/351 (27%), Gaps = 28/351 (7%)

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
           T  +  L  +  +L       +  L           L+     +          +L    
Sbjct: 139 TTPFAHLQIDHRTLYWITAALSYTLAAVGFFMVAEPLRRVQVGAGRLAGLFGLTALPLIA 198

Query: 316 DEGENLTPETVD--KCPIPFFVYSHGNLFYANPSFLLLTKYKSVD----------DIEIA 363
           +    L+P  +D    P+    ++ G LF     F    +  +             +   
Sbjct: 199 NGLGYLSPALLDVSHEPVGVAAFAIGVLFVYQDRFEETGRTGTQANPALVLSKGGRLRNY 258

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
              +  L     + + A + +     +     A             +             
Sbjct: 259 NEAAATLFPALAAKSAAGRRLSDLLPEVAEAIAEGAEPLQVDENGTARYFRLSQSRYGRG 318

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI-----INREG-IILST 477
               +    +  +  +  + +R  E E   L   +    + + +     ++  G  I+  
Sbjct: 319 TGRQV----VLKDVTERVLRRRVREQEHRFLAEAVGQAREAVLVTEAGPLDEPGPRIVYA 374

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
           N A   + GY   ++L +   V     T   +   L   L    R   +  T+   K+  
Sbjct: 375 NEAFEAMTGYREGEVLGRTPRVLQGPETDEAVLGSLRAALEAGERW--QGETVNYRKDGT 432

Query: 538 LLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
              ++  +  +         +     D++E ++ + +L   K + E+    
Sbjct: 433 PYVVQWNVAPVTGEGGEIQHWVSVQRDVTEEREREEQLRRQKGLLEQTQRL 483


>gi|16130302|ref|NP_416871.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Escherichia coli str. K-12 substr. MG1655]
 gi|89109190|ref|AP_002970.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Escherichia coli str. K-12 substr. W3110]
 gi|170019338|ref|YP_001724292.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Escherichia coli ATCC 8739]
 gi|253772721|ref|YP_003035552.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254162363|ref|YP_003045471.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Escherichia coli B str. REL606]
 gi|256021930|ref|ZP_05435795.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Escherichia sp. 4_1_40B]
 gi|301647536|ref|ZP_07247336.1| response regulator receiver domain protein [Escherichia coli MS
           146-1]
 gi|307139018|ref|ZP_07498374.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Escherichia coli H736]
 gi|2507377|sp|P30855|EVGS_ECOLI RecName: Full=Sensor protein evgS; Flags: Precursor
 gi|1788713|gb|AAC75429.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Escherichia coli str. K-12 substr. MG1655]
 gi|1799781|dbj|BAA16241.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Escherichia coli str. K12 substr. W3110]
 gi|169754266|gb|ACA76965.1| Hpt sensor hybrid histidine kinase [Escherichia coli ATCC 8739]
 gi|242377988|emb|CAQ32758.1| EvgS sensory histidine kinase [Escherichia coli BL21(DE3)]
 gi|253323765|gb|ACT28367.1| Hpt sensor hybrid histidine kinase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253974264|gb|ACT39935.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Escherichia coli B str. REL606]
 gi|253978431|gb|ACT44101.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Escherichia coli BL21(DE3)]
 gi|301074332|gb|EFK89138.1| response regulator receiver domain protein [Escherichia coli MS
           146-1]
 gi|315615624|gb|EFU96256.1| sensor protein evgS [Escherichia coli 3431]
 gi|323941123|gb|EGB37309.1| response regulator receiver domain-containing protein [Escherichia
           coli E482]
          Length = 1197

 Score =  276 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 91/419 (21%), Positives = 164/419 (39%), Gaps = 12/419 (2%)

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
            W+  +                  +    +       ++ +  +E ++    ++ ++  +
Sbjct: 528 TWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISFRKALSDSLPN 587

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--NTPSVMNHYLTEILSLDL 521
              ++N +G ++S N A    F          P         +  S  +    E      
Sbjct: 588 PTYVVNWQGNVISHNSAFEHYFTADYYKNAMLPLENSDSPFKDVFSNAHEVTAETKENRT 647

Query: 522 RQTLEKIT-LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
             T       G  K        +       ++ Y     DI+E +   N L   K  A K
Sbjct: 648 IYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLINALEVEKNKAIK 707

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            +  KS FLA +SHEIRTP+++I+GF E++       L   + +E  +    +G  +L +
Sbjct: 708 ATVAKSQFLATMSHEIRTPISSIMGFLELLS---GSGLSKEQRVEAISLAYATGQSLLGL 764

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILA 699
           + ++LD+ KIESG   L  + V +   V          A  K I +  S        +  
Sbjct: 765 IGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPEHYLVKI 824

Query: 700 DLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMTNYELEKA 756
           D ++ KQ+  N+LSNA+ FT  G  +I  S  H  +   ++   + D+G G++  E ++ 
Sbjct: 825 DPQAFKQVLSNLLSNALKFTTEGAVKITTSLGHIDDNHAVIKMTIMDSGSGLSQEEQQQL 884

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            K + Q   S   +  G+GLGL + K ++    G   + S P  GT   I  P+  +  
Sbjct: 885 FKRYSQT--SAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVEISQQ 941


>gi|261881250|ref|ZP_06007677.1| two component sensor histidine kinase [Prevotella bergensis DSM
           17361]
 gi|270331987|gb|EFA42773.1| two component sensor histidine kinase [Prevotella bergensis DSM
           17361]
          Length = 485

 Score =  276 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 77/377 (20%), Positives = 170/377 (45%), Gaps = 31/377 (8%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            K+++    + +I+++  + I  ++ +  +   N     +     ED++ K       +N
Sbjct: 129 SKLKVSKQYIETIIDSIDEPIVCLDHKLTLYFINNEALSILNLRREDVVGKSAQETAMRN 188

Query: 505 TPSVMNHYLTEILSLDLRQTLEKIT----LGSTKEEKLLSLRIIIKKLPF------SSCY 554
              ++   L  +    + +T EK T    + +  +E    ++ +  ++         S  
Sbjct: 189 D--LLRRLLVGMDRHKVHETDEKKTEPLKIYADNKESYFQVKYLPVRMTDHEGSIKESGT 246

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
            + + +I+E                K    K+ F++ +SHE++TP++AI+   +++ + R
Sbjct: 247 VIMLKNITE--------------FHKLDVAKTTFISTISHELKTPISAILMSEQLLADNR 292

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
            G L N    E ++ I  +G  +L I  +LL+++++ESG + L        E +  AI  
Sbjct: 293 VGGL-NQEQKELSDSIRENGERLLSITGELLNMTQVESGVLQLKPHITRPIELIDYAIKA 351

Query: 675 VQLYANEKRILIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
            Q+ A++  I I   +    I ++  D   +  +  N+LSNAI ++    ++ I      
Sbjct: 352 NQVQADKFHINIEVDYPKEKINKLYVDSEKIAWVLTNLLSNAIRYSSENDRVTIGALQQD 411

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
              V+L V+D G G+     +   + + ++P +   + +G+GLGL +++  V+A+ G   
Sbjct: 412 EHHVMLYVQDFGRGIDPRYHDSIFERYFRVPGT---KIQGSGLGLSISRDFVEAHNGTLT 468

Query: 794 IFSTPAKGTLIEIIFPL 810
           + S   KG+   +  P+
Sbjct: 469 VESELGKGSKFVVSLPV 485


>gi|326794044|ref|YP_004311864.1| multi-sensor hybrid histidine kinase [Marinomonas mediterranea
           MMB-1]
 gi|326544808|gb|ADZ90028.1| multi-sensor hybrid histidine kinase [Marinomonas mediterranea
           MMB-1]
          Length = 912

 Score =  276 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 77/256 (30%), Positives = 123/256 (48%), Gaps = 9/256 (3%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  Q    L      AE  +  K++FLA +SHEIRTP+  IIG   +I+N     +    
Sbjct: 210 QAIQLTKALEQNIIKAEAATKAKTEFLATMSHEIRTPMNGIIGLGHLIQNTVLDQI---- 265

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             +Y   + RS + +L I+ND+LD SKIESG + +      LD  + +   L +  A EK
Sbjct: 266 QSDYVRKMLRSADSLLSIINDILDFSKIESGSIEIEQRDFHLDSLLEQVFVLNESRAIEK 325

Query: 683 RILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS---NEEVI 738
            +         +   +  D   + QI +N++SNAI FT  G  + +S        +  + 
Sbjct: 326 GLTFTIDRDFRLQDALEGDSFRLNQILVNLVSNAIKFTEHGA-VSLSVAQIERFKDPWIR 384

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
             V+DTGVG+   ++E   + F Q  +S   +  GTGLGL + K + D   G+ ++ S  
Sbjct: 385 FSVKDTGVGIQPDKIESLFEAFKQEDSSTTRKYGGTGLGLAITKQLSDLLGGEIFVKSEL 444

Query: 799 AKGTLIEIIFPLYDTS 814
             G+   I  PL+  +
Sbjct: 445 GTGSEFRIELPLHPAN 460


>gi|298246254|ref|ZP_06970060.1| integral membrane sensor signal transduction histidine kinase
           [Ktedonobacter racemifer DSM 44963]
 gi|297553735|gb|EFH87600.1| integral membrane sensor signal transduction histidine kinase
           [Ktedonobacter racemifer DSM 44963]
          Length = 495

 Score =  276 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 71/237 (29%), Positives = 123/237 (51%), Gaps = 3/237 (1%)

Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
              ++   + + LA ++H++ TPLTAI GFSE + +            E A  I R    
Sbjct: 253 ELRRQEQARRELLANIAHDLATPLTAIQGFSEALADDMIQ--DPAARQETAQRIGREVQR 310

Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696
           +  +V DL  ++ +ESG+  L   P+SL E ++E +++++       I++     +++P 
Sbjct: 311 LRRMVADLQQMTSLESGRTRLDLAPLSLHELIAETLAVIEPECEHAGIVVHNETRDDVPL 370

Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-VILRVRDTGVGMTNYELEK 755
           + AD   V Q+ LN+L NA   TP GG I +      + + V + + DTGVG+ + +L  
Sbjct: 371 VQADSDRVTQVLLNLLDNARRHTPVGGTITVGAHPGESGQSVEVWIEDTGVGIDSADLPH 430

Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
             + F +   S+     G+GLGL + +A++ A+ GK +  STP KGT I    P+ +
Sbjct: 431 IFERFYRADRSRTGATGGSGLGLSIVRAIITAHGGKVWARSTPGKGTRISFSLPMAE 487


>gi|15601465|ref|NP_233096.1| sensor protein TorS [Vibrio cholerae O1 biovar eltor str. N16961]
 gi|254849869|ref|ZP_05239219.1| sensor protein TorS [Vibrio cholerae MO10]
 gi|9658128|gb|AAF96608.1| sensor protein TorS [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|254845574|gb|EET23988.1| sensor protein TorS [Vibrio cholerae MO10]
          Length = 1020

 Score =  276 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 72/238 (30%), Positives = 118/238 (49%), Gaps = 8/238 (3%)

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
           ++ AE+ S  KS FLA +SHEIRTP+  ++G + ++++             Y   I+RSG
Sbjct: 496 RQQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLQDTTLTST----QQHYVQVINRSG 551

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
             +L I+ND+LD SKIE+G + +H     L   VSE   L+Q  A EK I +      ++
Sbjct: 552 RSLLAILNDVLDYSKIEAGHLEIHHTHFDLYRLVSETHELMQSRAREKGITLTYHIDEDV 611

Query: 695 PRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-VILRVRDTGVGMTNYE 752
            +    D   + Q+  N++ N I FT  G ++ I      + + +   V D+G+G+   E
Sbjct: 612 TQYWQGDEIRIGQVLNNLVGNGIKFTDQG-EVRIRIRLAPDGQGIRFAVEDSGIGIAEEE 670

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
                  F Q    +  +  GTGLGL +++ +V A  G+  + S   +G+      PL
Sbjct: 671 QATLFDAFTQADAGR-RKLGGTGLGLAISRKLVQAMGGELQLASQLGQGSCFWFTLPL 727


>gi|325958802|ref|YP_004290268.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanobacterium sp. AL-21]
 gi|325330234|gb|ADZ09296.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanobacterium sp. AL-21]
          Length = 605

 Score =  276 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 72/386 (18%), Positives = 160/386 (41%), Gaps = 23/386 (5%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAI-INREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
           R ++++ +    +   +L+A    + I  +++G+ ++ N+        P      K    
Sbjct: 228 RASEKREQARSEEFARVLDAVPAAVWISHDKDGLWITGNQLSYDYLDIPQGANASKSLPP 287

Query: 500 FLEQNTPSVMNH---------YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
                +  +             +    +    +  E   +   KE + L           
Sbjct: 288 QEAPQSFKIFKDGKEMEPGEMPVQASSAGKEIRNYEFDLIYPEKEVRHLMGNATPLYDEE 347

Query: 551 S--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                      D+++ K+ + +++   K  E+ +     F    SH+++ PL  I  F+ 
Sbjct: 348 GKPRGSVSAFMDVTKRKKAEMQMASLLKELERSNRELEQFAYVTSHDLKEPLRMISSFT- 406

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
            +  Q+F    +     Y NYI      +  +++DLL  S+I +    + +EP+ L E V
Sbjct: 407 KLLEQKFKGQLDEDADNYINYIVDGTKRMQRLLDDLLAYSRISN---EVKYEPLKLTEIV 463

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF-TPSGGQIII 727
           +E+I  +++  +E +  I       +P ++A+   + Q+  N+++NAI F +     I +
Sbjct: 464 NESIHNLKVAIDENQAEITVD---PLPEVVANRTQMIQLFQNLIANAIKFQSKKKPVIHV 520

Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
           S    S  +    V+D G+G+ +  L++  K F ++  +     +GTG+GL + K +V  
Sbjct: 521 SCE-ESGNKYYFSVQDNGIGIDSKNLDRVFKMFQRLHTAD--EYDGTGIGLSITKKIVQQ 577

Query: 788 NMGKFYIFSTPAKGTLIEIIFPLYDT 813
           + G  ++ S   +G+      P+ + 
Sbjct: 578 HSGAVWVESKLDEGSTFYFSIPIDEQ 603



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 66/155 (42%), Gaps = 12/155 (7%)

Query: 446 KMEIEVMQLCS--------ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
           ++E  + +           + +++  G   ++++G I S N    ++ G   E+I+   F
Sbjct: 54  ELEKSLQEFDDSRNRMYYDLYQSSPLGYYSLDKDGKIKSVNNTGVRMLGTNKENIVDSNF 113

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCYS 555
             F+  +  ++    L    +    Q  E   +   K+     L II    ++     ++
Sbjct: 114 NKFVAPHFKNMFKFTLLTAANNHENQKCELNII-QNKDTLFTQLEIIPIFDEIENIKEFN 172

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHK-SDFL 589
           + + DISE K+ ++KL++     +++   + S+ L
Sbjct: 173 VILIDISEHKKLESKLNYRYDDLKEKMDARVSELL 207


>gi|254482907|ref|ZP_05096143.1| response regulator receiver domain protein [marine gamma
           proteobacterium HTCC2148]
 gi|214036779|gb|EEB77450.1| response regulator receiver domain protein [marine gamma
           proteobacterium HTCC2148]
          Length = 998

 Score =  276 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 72/283 (25%), Positives = 138/283 (48%), Gaps = 17/283 (6%)

Query: 537 KLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES-------SHKSDFL 589
           + + +   +  L   S   +         +   +L    +     +         KS FL
Sbjct: 297 RFILIAAAVTLLLVISLIVVIFRGYRSKHRLALQLEGKSRELGVANDKLVQVTEAKSRFL 356

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
           + +SHEIRTP+  +IG +E+++          +  EY + I +S + +L ++ND+LD SK
Sbjct: 357 SAMSHEIRTPMNGVIGMAELLEGTDLTN----QQGEYVSLIIKSADTLLGLINDILDFSK 412

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIA 708
           IE+G+++L   P +L + + + +  + L ANEK I +      +IP  ++ D   ++Q+ 
Sbjct: 413 IEAGRLDLEHIPFNLRDILGDTLQTLALRANEKDIELTFHIPPDIPDKLIGDPLRLRQVI 472

Query: 709 LNILSNAIHFTPSGGQIIISTTHTS----NEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764
           +N++ NAI FT  G ++ +     S    + +++  VRD+G+G+++ +  K  K F Q  
Sbjct: 473 VNLVGNAIKFTEVG-EVAVDLLLQSISDSDIQLVFEVRDSGIGISDAQQSKVFKAFDQAD 531

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
            S   +  GTGLGL +A+ + +   G   + S   +G+     
Sbjct: 532 TSTTRQFGGTGLGLAIARQLTEMMGGTMAVRSKLNEGSTFSFS 574


>gi|190892012|ref|YP_001978554.1| two-component sensor histidine kinase/response regulator hybrid
           protein [Rhizobium etli CIAT 652]
 gi|190697291|gb|ACE91376.1| probable two-component sensor histidine kinase/response regulator
           hybrid protein [Rhizobium etli CIAT 652]
          Length = 867

 Score =  276 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 104/649 (16%), Positives = 202/649 (31%), Gaps = 49/649 (7%)

Query: 190 DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH 249
            +D  A           L    KG        Y   +       ++    + S       
Sbjct: 83  QSDSLARAFLNSHPDGTLITDDKGRIIYANAAYGALTGARKATEVQTLETLLSRHRESNE 142

Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
               L           E     +      N +     +    L +    S + L      
Sbjct: 143 ALYRLVNGLREGKEGREEFRLLRAVGPGSNSSGAHWYRLKARLLHQEDNSGKPLQIWQIT 202

Query: 310 SLSAYFDEGENLTPET------VDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEI 362
            ++A  D+ E    E       +D  P  FF     G +FY N +            +  
Sbjct: 203 DITAERDDQERFFKELQNAIDYLDHAPAGFFSAGRKGEIFYLNATLAEWLGLDLTKFLPG 262

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
           +  +  L     ++         +          +  L  ++     SL +  I    + 
Sbjct: 263 SMSIGDL-----VAGEGLALIQSVQAEPGLKKTVTLDL-DLRKTNGQSLPVQIIHSVTSM 316

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
           +         I      +  + +      M+       T   IA ++ +G IL TN    
Sbjct: 317 RDGAPGESRTIVLAREKSSESGQSASAAAMRFTRFFNNTPMAIASVDGDGRILRTNAPFL 376

Query: 483 KLFG--YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
           KLF      +D+ + P    + Q +                       T   T E +   
Sbjct: 377 KLFSSVVSRDDLEKSPSLETIVQESDRPQLAAALAAAKDRQGDIAPLDTRTPTDEARYFR 436

Query: 541 LRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
             +                +   +++E K  + +++  +K+     +        ++H+ 
Sbjct: 437 FYVNAVIDQSDEAPEEAAIVYAVEVTEQKALEAQMAQTQKM-----NAVGTLAGGIAHDF 491

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
              LTAI+  S+ +  Q      +  + +    I R+ N    +V  LL  S+    K  
Sbjct: 492 NNVLTAILLSSDHLLLQARP--SDASFADLME-IKRNANRAAVLVRQLLAFSR----KQT 544

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716
           +    ++L + V +   LV    +   + +   +  ++  +  DL   +Q+ +N+  NA 
Sbjct: 545 MRPSVLNLTDVVGDLRMLVDRLLSGTNVKLDVQYGRDLWPVKTDLSQFEQVLINLCVNAR 604

Query: 717 HFTPSGGQIIISTT--------------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
              P GG + + T                 + + V++ V DTG G+    ++K  +PF  
Sbjct: 605 DAMPQGGTLTLRTRNLTAADVAAFNYSYMPAEDMVLVEVTDTGTGIAPDIMDKIFEPFFT 664

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
             +     G+GTGLGL +   +V  + G     S   KGT   +  P +
Sbjct: 665 TKD----VGKGTGLGLAMVYGIVKQSGGYIQPESEVGKGTTFRVFLPRH 709



 Score = 68.5 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 50/488 (10%), Positives = 123/488 (25%), Gaps = 41/488 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAF------KMIGMRLCDVSDILHIDPNNHIGDLLKRQNT 142
            D  G +   +       G          + +  R  + ++ L+   N  + +  + +  
Sbjct: 102 TDDKGRIIYANAAYGALTGARKATEVQTLETLLSRHRESNEALYRLVNG-LREGKEGREE 160

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
           +     + P   ++      L A  ++  +      + + I  +    +D     K L  
Sbjct: 161 FRLLRAVGPGSNSSGAHWYRLKARLLHQEDNSGKPLQIWQITDITAERDDQERFFKELQN 220

Query: 203 KFSHLHEIKKGHSSVEKEK---YDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK-TEK 258
              +L     G  S  ++    Y   +          K    S++       + L   + 
Sbjct: 221 AIDYLDHAPAGFFSAGRKGEIFYLNATLAEWLGLDLTKFLPGSMSIGDLVAGEGLALIQS 280

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE----YLSHRNHPSLSAY 314
                  + ++    D    N      +              E     L+          
Sbjct: 281 VQAEPGLKKTVTLDLDLRKTNGQSLPVQIIHSVTSMRDGAPGESRTIVLAREKSSESGQS 340

Query: 315 FDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLT-KYKSVDDIEIAGGLSTLLDA 372
                       +  P+    V   G +   N  FL L     S DD+E +  L T+   
Sbjct: 341 ASAAAMRFTRFFNNTPMAIASVDGDGRILRTNAPFLKLFSSVVSRDDLEKSPSLETI-VQ 399

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
                  A                  R      +               +          
Sbjct: 400 ESDRPQLAAALAAAKDRQGDIAPLDTRT---PTDEARYFRFYVNAVIDQSDEAPEEAAIV 456

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
              E  + +  + +M  +  ++ ++    + GIA           N  ++ +     + +
Sbjct: 457 YAVEVTEQKALEAQM-AQTQKMNAV-GTLAGGIA--------HDFNNVLTAIL-LSSDHL 505

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
           L         + + +     +    + +    L +  L  ++++ +      +  L    
Sbjct: 506 L------LQARPSDASFADLMEIKRNANRAAVLVRQLLAFSRKQTMRP---SVLNLTDVV 556

Query: 553 CYSLTMHD 560
                + D
Sbjct: 557 GDLRMLVD 564



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/345 (11%), Positives = 99/345 (28%), Gaps = 41/345 (11%)

Query: 313 AYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
               + ++L    ++  P    +    G + YAN ++  LT  +   +++    L TLL 
Sbjct: 79  MPQHQSDSLARAFLNSHPDGTLITDDKGRIIYANAAYGALTGARKATEVQT---LETLLS 135

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE-----NSLAMTFIPFEKANQFPE 426
             + S N A+  ++    +        RL             +   +      + +   +
Sbjct: 136 RHRES-NEALYRLVNGLREGKEGREEFRLLRAVGPGSNSSGAHWYRLKARLLHQEDNSGK 194

Query: 427 NMPQNGIEPEDVDTRINKR---KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
            +    I     +    +R   +++  +  L    +    G     R+G I   N  +++
Sbjct: 195 PLQIWQITDITAERDDQERFFKELQNAIDYL----DHAPAGFFSAGRKGEIFYLNATLAE 250

Query: 484 LFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
             G  +   L         +     +++           L++T+           + L +
Sbjct: 251 WLGLDLTKFLPGSMSIGDLVAGEGLALIQSV---QAEPGLKKTVTLDLDLRKTNGQSLPV 307

Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
           +II                I      + K S + + A   +   + F         TP+ 
Sbjct: 308 QIIHSVTSMRDGAPGESRTI---VLAREKSSESGQSASAAAMRFTRFFNN------TPMA 358

Query: 602 A--------IIGFSEVIKNQRFGPLGNPRYIE--YANYIDRSGNL 636
                    I+  +          +      +      I +  + 
Sbjct: 359 IASVDGDGRILRTNAPFLKLFSSVVSRDDLEKSPSLETIVQESDR 403


>gi|186682661|ref|YP_001865857.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186465113|gb|ACC80914.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 1242

 Score =  276 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 85/322 (26%), Positives = 144/322 (44%), Gaps = 5/322 (1%)

Query: 495  KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554
            +        ++   +   L    + +  +             K  S R ++ ++  +   
Sbjct: 781  QLLRELRSASSTREVPIILLSARAGEESRVEGLEMGADDYLIKPFSARELLARVRTNLEL 840

Query: 555  SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
            S    D    + E+ +   A+  AE  +  K +FL  +SHEIRTPL  ++G+ ++++  +
Sbjct: 841  SRLRKDALAQQAERIREQAARVEAEAANRMKDEFLQVLSHEIRTPLNGMLGWVKMLRQGK 900

Query: 615  FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                   R       I+R+ N    +V+DLLD+S I  G++ L   PVSL   ++EAI  
Sbjct: 901  LDSSATTRA---LETIERNANAQAKLVDDLLDVSCIIRGQLRLEKRPVSLISVITEAIET 957

Query: 675  VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
            ++  A  K I I       +  +  D   ++Q+A N+LSNAI FTPSGGQ+ +S      
Sbjct: 958  LKPQAEAKDITINCMLDRYVSSVSGDASRLQQVAWNLLSNAIKFTPSGGQVEVSLQAV-G 1016

Query: 735  EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
             + +L+V+DTG G+    L    + F Q   S      G GLGL + + +V+ + G    
Sbjct: 1017 TDALLQVKDTGNGIKADFLPYIFERFRQADASTTRTYGGLGLGLAIVRHLVEMHGGTVEA 1076

Query: 795  FS-TPAKGTLIEIIFPLYDTSH 815
             S     G    +  PL   S+
Sbjct: 1077 DSPGLGLGATFGVRLPLMSISY 1098



 Score =  266 bits (681), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 97/624 (15%), Positives = 205/624 (32%), Gaps = 63/624 (10%)

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
               +   L  ++      ++ S  ++       +N      + G+ +   +      + 
Sbjct: 56  EVVRQGLRLLQQQVASSNPKKESNSQESATINSAVNDKRLNMFPGSGEMRERIHNFDWAS 115

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365
            +  S+  +           +        ++    +   N ++  L   K    +  +  
Sbjct: 116 TSVGSVETWPQSLRATIRTLLGSRYPMILLWGQDLVQIYNDAYTSLIGAKHPLALGRSIQ 175

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR-ENSLAMTFIPFEKANQF 424
            +       +             +         ++  +           +       +  
Sbjct: 176 ETQSESWDVIGPMIVE-----VMTTGVPNWVEDQMMVVNRADYNEEAHFSLSYSAVEDDE 230

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCS--------------ILEATSD------- 463
                   +  E     + +R++ ++   L +              IL   ++       
Sbjct: 231 GAIKGMLCVCSEVTQQVLGERRLRLQRD-LAARSGDTRSVETTCKDILSTIAEYPQDVPF 289

Query: 464 -GIAIINREGIILS--------TNRA-----------------VSKLFG-YPVEDILRKP 496
             I +   +G  +          N +                    + G   + + L + 
Sbjct: 290 ALIYLSEPDGKTVRLSGSVRANINESIAPLKVVLEEFTDIWPLAEVMLGNTTLIEGLNRH 349

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556
            T+        V       I S ++   L  +  G +   +L        +L      S+
Sbjct: 350 ITIVGGPWNEIVYQAIALPIPSSNVTAPLGVLIAGISPNRRLDESYKSFYELLAGQ-VSV 408

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
           ++ +     Q   +     +   +    K+ F   VSHE RTPLT I+G  E + N +  
Sbjct: 409 SLRN----AQAYEEERKKAQALAELDRTKTAFFNNVSHEFRTPLTLILGPLEDVLNNQNA 464

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
            L +    E    + R+   +L +VN LLD S+IE+ ++   +EP+ L    +E  S+ +
Sbjct: 465 RLTSEE-REQLQLVHRNSLRLLKLVNTLLDFSRIEANRIQAVYEPIDLAVFTTELASVFR 523

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
                  + +          +  D    ++I LN+LSNA  FT  G QI +S    +   
Sbjct: 524 STIERAGLRLIVDCPPLPEAVYVDREMWEKIVLNLLSNAFKFTFIG-QISVSLRWYTE-Y 581

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           V L V+DTG+G+   EL    + F ++   Q    EG+G+GL L + ++  + G   + S
Sbjct: 582 VELEVQDTGIGIPAEELPHLFERFYRVQGLQGRTYEGSGIGLSLVQDLIRLHGGSIRVSS 641

Query: 797 TPAKGTLIEIIFPLYDTSHPHDCI 820
              +G+   ++ P      P + I
Sbjct: 642 KVNQGSSFIVLLPTGTAHLPTERI 665



 Score = 40.4 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 36/416 (8%), Positives = 95/416 (22%), Gaps = 33/416 (7%)

Query: 82  TVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN 141
            +   W  D    ++  ++     IG      +G  + +            I +++    
Sbjct: 141 PMILLWGQDL---VQIYNDAYTSLIGAKHPLALGRSIQETQSESWDVIGPMIVEVMTTGV 197

Query: 142 T--WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199
                 +  +      N      L+   +        G     +              + 
Sbjct: 198 PNWVEDQMMVVNRADYNEEAHFSLSYSAVEDDEGAIKGM--LCVCSEVTQQVLGERRLRL 255

Query: 200 LDKKFSHLHEIKK---------GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK 250
                +   + +             +   +           P  +      S+       
Sbjct: 256 QRDLAARSGDTRSVETTCKDILSTIAEYPQDVPFALIYLSEPDGKTVRLSGSVRANINES 315

Query: 251 DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310
              LK            +     +   I           G       ++       ++ +
Sbjct: 316 IAPLKVVLEEFTDIWPLAEVMLGNTTLIEGLNRHITIVGGPWNEIVYQAIALPIPSSNVT 375

Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYA--NPSFLLLTKYKSVDDIEIAGGLST 368
                          +D+    F+    G +  +  N       + K    +       T
Sbjct: 376 APLGVLIAGISPNRRLDESYKSFYELLAGQVSVSLRNAQAYEE-ERKKAQALAELDRTKT 434

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN-----RENSLAMTFIPFEKANQ 423
                   +      ++L   +      +ARL + +         NSL +  +     + 
Sbjct: 435 AFFNNVSHEFRTPLTLILGPLEDVLNNQNARLTSEEREQLQLVHRNSLRLLKLVNTLLDF 494

Query: 424 FPENMPQNGIEPEDVDTRINKRKME------IEVMQLCSILEA--TSDGIAIINRE 471
                 +     E +D  +   ++       IE   L  I++     + + + +RE
Sbjct: 495 SRIEANRIQAVYEPIDLAVFTTELASVFRSTIERAGLRLIVDCPPLPEAVYV-DRE 549


>gi|330877094|gb|EGH11243.1| sensor histidine kinase/response regulator GacS [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
          Length = 917

 Score =  276 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 76/243 (31%), Positives = 140/243 (57%), Gaps = 8/243 (3%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  A+K A + S  KS+FLA +SHEIRTPL  I+GF+ +++     P    R  +Y   
Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSELTP----RQFDYLAT 325

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I++S + +L I+N++LD SKIE+GK+ L   P +L + + + ++++   A+ K++ + + 
Sbjct: 326 IEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSL 385

Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQI---IISTTHTSNEEVILRVRDTG 745
              + P  +  D   ++QI  N++SNAI FT  G  +   ++      + ++ + V+DTG
Sbjct: 386 VYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAMLEDETEEHAQLRISVQDTG 445

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+++ ++    + F Q  NS   +  GTGLGL ++K +++   G+  + STP +G+   
Sbjct: 446 IGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFW 505

Query: 806 IIF 808
           I  
Sbjct: 506 ISL 508


>gi|162449617|ref|YP_001611984.1| hybrid histidine kinase [Sorangium cellulosum 'So ce 56']
 gi|161160199|emb|CAN91504.1| Hybrid histidine kinase [Sorangium cellulosum 'So ce 56']
          Length = 949

 Score =  276 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 104/510 (20%), Positives = 183/510 (35%), Gaps = 38/510 (7%)

Query: 332 PFFVYSHGNLFYANPSFLLLTKYKSVDDIE---IAGGLSTLLDAPKLSDNNAIKPVMLYR 388
              +YS      A     LL+  +    +     A  L +L+      D  A+    +  
Sbjct: 34  GALIYSTDRAVQAKREQELLSGLEEKARLLGFNQALALRSLVADNLFGDVKALIHQTVSE 93

Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
           ++              W       +           P     +           ++  + 
Sbjct: 94  NNDIAYGVFFDAENRVWAASGLARVPASKDALGPAAPNFTAADLESLGISTAHQSRLALR 153

Query: 449 IEVMQL--CSILE----------ATSDGIAIINREGIILSTNRA----VSKL---FGYPV 489
                L    +LE               I  I+   ++    +A     ++L    G  V
Sbjct: 154 RRQNPLGGEDVLEVAAPVLSEGAHAGTVIYGISTRSVVERMVQARDLAANRLVTTLGLIV 213

Query: 490 EDILRKPFTVFL-------EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
             IL      +            P +        ++  LR +           +K   ++
Sbjct: 214 ALILGSGAASYFLVKRVAVHITEPLLALRTAAGAIATGLRSSAPPTESPIADRKKWERVQ 273

Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
           I           S     +   +Q   +L    + A + S  KS+FLA +SHEIRTP+  
Sbjct: 274 ITSGDELELLG-SAFNSMVEANEQAFEELRVKTEQALEASRMKSEFLANMSHEIRTPMNG 332

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           I+G   +++NQ      + +   Y   +D S N ++ I+ND+LD SK+E+GK        
Sbjct: 333 ILGVIRLMQNQSL----DGKMRRYVETVDASANTLMSIINDVLDFSKLEAGKYVAQHVSF 388

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPS 721
            L   + E   L+   A+EK + +       +P  ++ D    +Q+  N++ NAI FT  
Sbjct: 389 DLRLVIQEVAELMASQAHEKGLELVYRVERRVPTGVVGDPDRFRQVLTNLVGNAIKFTDR 448

Query: 722 GGQ-IIISTTHTSNEEVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
           G   I  ST+       ++   V DTG G+   + +K    F Q+  S   +  GTGLGL
Sbjct: 449 GEVLIDASTSQQDKATALIKLAVVDTGPGIAPDDQKKLFAAFSQVDGSLVRKHGGTGLGL 508

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            ++K +V+   G+  + STP +G+      
Sbjct: 509 AISKRLVEVMGGEVGLDSTPGQGSRFWFTI 538


>gi|34497406|ref|NP_901621.1| two-component sensor [Chromobacterium violaceum ATCC 12472]
 gi|34330344|gb|AAQ59623.2| probable two-component sensor [Chromobacterium violaceum ATCC
           12472]
          Length = 562

 Score =  276 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 75/253 (29%), Positives = 125/253 (49%), Gaps = 8/253 (3%)

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           DI+E K  + +L  A+  A   +  KS FLA +SHEIRTP+  ++G  E++   R     
Sbjct: 5   DITERKMAEFELRMARDQANAANRAKSAFLATMSHEIRTPMNGVLGMLELLAMTRL---- 60

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
           +    +    I  S N +L +++D+LD SKIE+ ++ +     ++   +    SL    A
Sbjct: 61  DAEQSDTVATIQDSANTLLRLIDDILDFSKIEADRLEIVPTRTAIRPFMDSVRSLYHENA 120

Query: 680 NEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEE- 736
           ++K + +  +  + + P ++ D   V+QI  N +SNAI FT SG   I +    T     
Sbjct: 121 SKKGLELTLTLDDKLAPTLVIDPLRVRQILQNFISNAIKFTASGKVDIRVKVMDTVANYQ 180

Query: 737 -VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            +   V DTG+GM+  +L K  +PF Q  +    R  GTGLGL + + +     G   + 
Sbjct: 181 VLSFEVEDTGIGMSQEQLSKLFQPFTQADSETTRRFGGTGLGLAICRRLAGLMGGHVEME 240

Query: 796 STPAKGTLIEIIF 808
           S   KG+   ++ 
Sbjct: 241 SEQGKGSCARLLL 253


>gi|302341576|ref|YP_003806105.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM
           2075]
 gi|301638189|gb|ADK83511.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM
           2075]
          Length = 745

 Score =  276 bits (707), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 73/408 (17%), Positives = 148/408 (36%), Gaps = 24/408 (5%)

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
                +         +  E +        ++    +   ++E+ SD I   ++ G++LS 
Sbjct: 204 QAVEARGGLERSNAMLRQEVMARERTAADLQASEERYRELIESISDCILTHDQNGVLLSI 263

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
           N   +   GY  E ++ +P   FL         ++    ++   +         S  + +
Sbjct: 264 NSLAASSLGYRPEQLVGRPIADFLPPTYRERFANHYMAQINKVGQAMGVMEIQASDGQTR 323

Query: 538 LLSLRIIIKKLPFSSCYS-LTMHDISEWKQEKNKLSHAKKIAEKE--SSHKSDFLARVSH 594
            L  R  + + P  + Y      DI+   +   ++   ++   +             ++H
Sbjct: 324 YLEYRTALVRPPEGAPYVSGLARDITRRVEADRQVRRLQEQLAQARKMEALGTLAGGIAH 383

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           +    L AI+G++E+ +       G          I ++     D++  +L  S+   GK
Sbjct: 384 DFNNILAAIMGYAEICQAAVADGQGQENDQR-LELIIKAAERARDLIRQILTFSRP-KGK 441

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714
                 P  L   + E + L +       I ++   A     ++ D   ++Q+ +N+ +N
Sbjct: 442 ---DMRPTRLGPLIEEVLGLFRGGLPA-SIALKADLAAGQAVVVCDPTQIQQLLMNLCAN 497

Query: 715 AIHFTPS-GGQIIISTT----------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
           A+H     GG+I +              T      L V D G G+     ++   PF   
Sbjct: 498 AMHAMEQRGGEIRVGLEVVDLSAGQDGLTPGRYARLSVSDDGDGIPKAIADRVFDPFFTT 557

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
                  G+GTG+GL +A  +V A+ G+    S P  G    ++ PL 
Sbjct: 558 KA----EGKGTGMGLAVAHGIVAAHNGRIGFESAPGAGATFRVLLPLA 601



 Score = 44.6 bits (104), Expect = 0.069,   Method: Composition-based stats.
 Identities = 32/365 (8%), Positives = 83/365 (22%), Gaps = 29/365 (7%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTT 148
           D +G L  I+     ++G    +++G  + D     + +   NH    + +     G   
Sbjct: 255 DQNGVLLSINSLAASSLGYRPEQLVGRPIADFLPPTYRERFANHYMAQINKVGQAMGVME 314

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF-GIVHVNRVDNDPRALGKRLDKKFSHL 207
           +   +G   Y+    A +      R   G     G+        +     +RL ++ +  
Sbjct: 315 IQASDGQTRYLEYRTALV------RPPEGAPYVSGLARDITRRVEADRQVRRLQEQLAQA 368

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
            +++   +      +D  +  +         + +         D  L+        + + 
Sbjct: 369 RKMEALGTLAGGIAHDFNNILAAIMGYAEICQAAVADGQGQENDQRLELIIKAAERARDL 428

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
                        +    +      +          +     +  A         P  + 
Sbjct: 429 IRQILTFSRPKGKDMRPTRLGPLIEEVLGLFRGGLPASIALKADLAAGQAVVVCDPTQIQ 488

Query: 328 KC-------PIPFFVYSHGNLFYA-------------NPSFLLLTKYKSVDDIEIAGGLS 367
           +         +       G +                 P            D        
Sbjct: 489 QLLMNLCANAMHAMEQRGGEIRVGLEVVDLSAGQDGLTPGRYARLSVSDDGDGIPKAIAD 548

Query: 368 TLLDAPKLSDNNAIKP-VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
            + D    +        + L  +     A + R+         +     +P        E
Sbjct: 549 RVFDPFFTTKAEGKGTGMGLAVAHGIVAAHNGRIGFESAPGAGATFRVLLPLAAEGPTVE 608

Query: 427 NMPQN 431
                
Sbjct: 609 ADRPA 613


>gi|330966578|gb|EGH66838.1| sensor histidine kinase/response regulator GacS [Pseudomonas
           syringae pv. actinidiae str. M302091]
          Length = 917

 Score =  276 bits (707), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 76/243 (31%), Positives = 140/243 (57%), Gaps = 8/243 (3%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  A+K A + S  KS+FLA +SHEIRTPL  I+GF+ +++     P    R  +Y   
Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSELTP----RQFDYLAT 325

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I++S + +L I+N++LD SKIE+GK+ L   P +L + + + ++++   A+ K++ + + 
Sbjct: 326 IEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSL 385

Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQI---IISTTHTSNEEVILRVRDTG 745
              + P  +  D   ++QI  N++SNAI FT  G  +   ++      + ++ + V+DTG
Sbjct: 386 VYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAMLEDETEEHAQLRISVQDTG 445

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+++ ++    + F Q  NS   +  GTGLGL ++K +++   G+  + STP +G+   
Sbjct: 446 IGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFW 505

Query: 806 IIF 808
           I  
Sbjct: 506 ISL 508


>gi|114707286|ref|ZP_01440183.1| sensor kinase [Fulvimarina pelagi HTCC2506]
 gi|114537167|gb|EAU40294.1| sensor kinase [Fulvimarina pelagi HTCC2506]
          Length = 841

 Score =  276 bits (707), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 94/642 (14%), Positives = 200/642 (31%), Gaps = 52/642 (8%)

Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA 248
            +           ++ +   + K       +    +   ++          ++      A
Sbjct: 81  DEGAAARSFLDGARQGAVFVDTKGRVVYANQSYGRLIGAENGADVQSPVQLLARN--SGA 138

Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL--SHR 306
            +D     +        +            +      +     +Q+       +      
Sbjct: 139 AEDVYWLAKAARDGGGGQRVFRLDTPLSRADNQARWYRVSVRPIQSPGGMLEAWQIADIT 198

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGG 365
                            + +DK P+ FF       L Y N +           D+     
Sbjct: 199 ADRREEEASFRTLQDAIDYLDKAPVGFFAADAELRLNYLNATLATWL----ETDLGSFDP 254

Query: 366 LSTLLDAPKLSDNNAIKPVML-YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
               L         A     L    +         L T +      L +  +  +   + 
Sbjct: 255 GRATLSDHLPKPMRAHLETRLKSLVEGETQLIDLDLTTAR---GRILPVKLVAQKARERD 311

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
                ++ +  E           E    +      A    IA ++ + +   +N A  +L
Sbjct: 312 GRTGLRSIVINETFG---EANHSEAATARFNRFFNAAPMAIAALDDQYVSRRSNPAFERL 368

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
           FG    D     F   L + +   +  YL    S    +         + + + + + + 
Sbjct: 369 FGSNAVDGHG-SFLELLTEESAGRLGGYLQAA-SDGEAEISPIDVTLKSDKPRSVRIYLN 426

Query: 545 IKKLP---FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
                         L   D+++ +  + + + A+K+         +    ++H+    LT
Sbjct: 427 AIPDRVSGAGETIILYAVDMTDQRALEEQFAKAQKM-----QAVGNLAGGIAHDFNNVLT 481

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
            I    + +   +    G+P + +    I +S N    +V  LL  S+    +  +  + 
Sbjct: 482 VITASVDFLLMNQ--KPGDPSFQDLL-LIKQSANRAASLVRQLLAYSR----RQTMRPKM 534

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           ++L + V++ + L+       +  +    A N+  ++AD+   +Q+  N++ NA    P+
Sbjct: 535 LNLTDVVAD-LDLLLKRIAGDKTKLERRHARNLWPVMADIGQFEQVITNLVGNARDAMPN 593

Query: 722 GGQIIISTTHTSNE--------------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
           GG I I T +                   V++ V DTG GM     E+  +PF       
Sbjct: 594 GGTIKIETRNVEEGHARVFGYSEMPAADYVLVEVSDTGTGMPADVAERIFEPFFTTK--- 650

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
              G+GTGLGL +   ++  + G  Y+ ST  +GT+  I  P
Sbjct: 651 -EIGKGTGLGLSMVYGIIKQSNGFIYVESTEGEGTVFRIFLP 691



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/247 (11%), Positives = 72/247 (29%), Gaps = 12/247 (4%)

Query: 314 YFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
             DEG               FV + G + YAN S+  L   ++  D++    L       
Sbjct: 79  RADEGAAARSFLDGARQGAVFVDTKGRVVYANQSYGRLIGAENGADVQSPVQLLAR--NS 136

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE-NSLAMTFIPFEKANQFPENMPQNG 432
             +++                         + + +     ++  P +      E      
Sbjct: 137 GAAEDVYWLAKAARDGGGGQRVFRLDTPLSRADNQARWYRVSVRPIQSPGGMLEAWQIAD 196

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF--GYPVE 490
           I  +  +   + R ++  +  L    +    G    + E  +   N  ++          
Sbjct: 197 ITADRREEEASFRTLQDAIDYL----DKAPVGFFAADAELRLNYLNATLATWLETDLGSF 252

Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
           D  R   +  L +   + +   L  ++  + +         +T   ++L ++++ +K   
Sbjct: 253 DPGRATLSDHLPKPMRAHLETRLKSLVEGETQLI---DLDLTTARGRILPVKLVAQKARE 309

Query: 551 SSCYSLT 557
               +  
Sbjct: 310 RDGRTGL 316



 Score = 65.8 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/292 (11%), Positives = 83/292 (28%), Gaps = 25/292 (8%)

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN--RENSLAMTFIPFEKANQFPEN 427
            D P +        V         +   A    +  N     +L + F            
Sbjct: 8   FDKPLIDRTERAGSVRRLLLFGGFLIVLAAAMALFGNAYGGIALLVIFALVSIFGVVALF 67

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
               G+                      S L+    G   ++ +G ++  N++  +L G 
Sbjct: 68  GFALGLISIGGRADEGAAA--------RSFLDGARQGAVFVDTKGRVVYANQSYGRLIGA 119

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILS--LDLRQTLEKITLGSTKEEKLLSLRIII 545
                ++ P  +    +  +   ++L +        ++     T  S  + +    R+ +
Sbjct: 120 ENGADVQSPVQLLARNSGAAEDVYWLAKAARDGGGGQRVFRLDTPLSRADNQARWYRVSV 179

Query: 546 KKLPFSSCYS--LTMHDIS-EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
           + +           + DI+ + ++E+      +   +        F A  + E+R  L  
Sbjct: 180 RPIQSPGGMLEAWQIADITADRREEEASFRTLQDAIDYLDKAPVGFFAADA-ELR--LNY 236

Query: 603 IIGFSEVIKNQRFGPLGNPR--YIEYANYIDRSG--NLVLDIVN---DLLDI 647
           +            G     R    ++     R+     +  +V     L+D+
Sbjct: 237 LNATLATWLETDLGSFDPGRATLSDHLPKPMRAHLETRLKSLVEGETQLIDL 288



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 46/377 (12%), Positives = 93/377 (24%), Gaps = 25/377 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D  G +   ++   + IG      +      +         +        ++   G+  
Sbjct: 100 VDTKGRVVYANQSYGRLIGAENGADV-QSPVQLLARNSGAAEDVYWLAKAARDGGGGQRV 158

Query: 149 LW----PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
                      N      ++  PI S       ++   I  +     +  A  + L    
Sbjct: 159 FRLDTPLSRADNQARWYRVSVRPIQSPGGMLEAWQ---IADITADRREEEASFRTLQDAI 215

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
            +L +   G  + + E    +   +    L     + S     A   D L       L +
Sbjct: 216 DYLDKAPVGFFAADAELRLNYLNATLATWLETD--LGSFDPGRATLSDHLPKPMRAHLET 273

Query: 265 EESSLPEQE------DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY-FDE 317
              SL E E      D  T        K      +     +       N     A   + 
Sbjct: 274 RLKSLVEGETQLIDLDLTTARGRILPVKLVAQKARERDGRTGLRSIVINETFGEANHSEA 333

Query: 318 GENLTPETVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
                    +  P+         +   +NP+F  L    +VD     G    LL      
Sbjct: 334 ATARFNRFFNAAPMAIAALDDQYVSRRSNPAFERLFGSNAVD---GHGSFLELLTEESAG 390

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
                        +         L +    R   + +  IP   +      +       +
Sbjct: 391 RLGGYLQAA-SDGEAEISPIDVTLKS-DKPRSVRIYLNAIPDRVSGAGETIILYAVDMTD 448

Query: 437 DVDTRINKRKMEIEVMQ 453
                + ++  + + MQ
Sbjct: 449 --QRALEEQFAKAQKMQ 463



 Score = 38.9 bits (89), Expect = 3.9,   Method: Composition-based stats.
 Identities = 38/315 (12%), Positives = 78/315 (24%), Gaps = 17/315 (5%)

Query: 79  IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK 138
               V F +  DA   L  ++  L   +       +G      + +    P      L  
Sbjct: 219 DKAPVGF-FAADAELRLNYLNATLATWL----ETDLGSFDPGRATLSDHLPKPMRAHLET 273

Query: 139 RQNT-WYGKTTLWPIEGTNLY---VPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPR 194
           R  +   G+T L  ++ T      +P+ L A     R+   +G R   I       N   
Sbjct: 274 RLKSLVEGETQLIDLDLTTARGRILPVKLVAQKARERDGR-TGLRSIVINETFGEANHSE 332

Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254
           A   R ++ F+    +       +                   +   S  E    +    
Sbjct: 333 AATARFNRFFNA-APMAIAALDDQYVSRRSNPAFERLFGSNAVDGHGSFLELLTEESAGR 391

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
                   +  E+ +   +     +  +  +          S      + +    +    
Sbjct: 392 LGGYLQAASDGEAEISPIDVTLKSDKPRSVRIYLNAIPDRVSGAGETIILYAVDMTDQRA 451

Query: 315 FDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
            +E      +            + G     N    ++T       +    G         
Sbjct: 452 LEEQFAKAQKM-----QAVGNLAGGIAHDFNNVLTVITASVDFLLMNQKPG-DPSFQDLL 505

Query: 375 LSDNNAIKPVMLYRS 389
           L   +A +   L R 
Sbjct: 506 LIKQSANRAASLVRQ 520


>gi|332304964|ref|YP_004432815.1| ATP-binding region ATPase domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332172293|gb|AEE21547.1| ATP-binding region ATPase domain protein [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 1058

 Score =  276 bits (707), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 77/242 (31%), Positives = 136/242 (56%), Gaps = 9/242 (3%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  A+K A   S+ KS FLA +SHEIRTPL AI+GFS+ ++   F         +  N 
Sbjct: 430 RLDIARKEAVAASNVKSQFLANMSHEIRTPLNAILGFSKELQQADFSA----DKRDQINI 485

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I+ + + ++ IVND+LD+SKIE+GK+ ++  P S++E + E I ++   A+ K +     
Sbjct: 486 INAAADNLMTIVNDVLDVSKIEAGKLQINSHPFSINELLEEMIGVMAKSAHLKGLEFVYD 545

Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT--HTSNE--EVILRVRDTG 745
                 +++ D   ++QI  N+L NA+ FT +G  I +S +     +   E+ +++ DTG
Sbjct: 546 IEPLPLKLIGDSYRIRQILNNLLGNALKFTDTG-HIGLSASGKLLEHGIFELNIKIEDTG 604

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G++  +  K    F Q+ ++     +GTGLGL + K +V    G+  + S+P +G++  
Sbjct: 605 IGISREDKRKLFTAFSQVDDALNRSYQGTGLGLVICKELVKLMHGQLSLQSSPGQGSVFN 664

Query: 806 II 807
           + 
Sbjct: 665 VT 666


>gi|332093442|gb|EGI98500.1| sensor protein evgS [Shigella boydii 3594-74]
          Length = 1128

 Score =  276 bits (707), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 88/419 (21%), Positives = 163/419 (38%), Gaps = 12/419 (2%)

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
            W+  +                  +    +       ++ +  +E ++    ++ ++  +
Sbjct: 459 TWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISFRKALSDSLPN 518

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--NTPSVMNHYLTEILSLDL 521
              ++N +G ++S N A    F          P         +  S  +    E      
Sbjct: 519 PTYVVNWQGNVISHNSAFEHYFTADYYKNAMLPLENSDSPFKDVFSNAHEVTAETKENRT 578

Query: 522 RQTLEKIT-LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
             T       G  K        +        + Y     DI+E +   + L   +  A  
Sbjct: 579 IYTQVFEIDNGIEKRCINHWHTLCNLPASDHAVYICGWQDITETRDLIHALEVERNKAIN 638

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            +  KS FLA +SHEIRTP+++I+GF E++       L   + +E  +    +G  +L +
Sbjct: 639 ATVAKSQFLATMSHEIRTPISSIMGFLELLS---GSGLSKEQRVEAISLAYATGQSLLGL 695

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILA 699
           + ++LD+ KIESG   L  + V +   V          A  K I +  S    +   +  
Sbjct: 696 IGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPDHYLVKI 755

Query: 700 DLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMTNYELEKA 756
           D ++ KQ+  N+LSNA+ FT  G  +I  S  H  +   ++   + D+G G++  E ++ 
Sbjct: 756 DPQAFKQVLSNLLSNALKFTTEGAVKITTSLVHIDDNHAVIKMTIMDSGSGLSQEEQQQL 815

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            K + Q   S   +  G+GLGL + K ++    G   + S P  GT   I  P+  +  
Sbjct: 816 FKRYSQT--SAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVEISQQ 872


>gi|325262479|ref|ZP_08129216.1| sensory box sensor histidine kinase/response regulator [Clostridium
            sp. D5]
 gi|324032311|gb|EGB93589.1| sensory box sensor histidine kinase/response regulator [Clostridium
            sp. D5]
          Length = 1294

 Score =  276 bits (707), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 115/771 (14%), Positives = 244/771 (31%), Gaps = 93/771 (12%)

Query: 98   ISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG----KTTLWPIE 153
            ISE   +       +   +   D    +H D +         +    G    +       
Sbjct: 400  ISEGFAELTSMSLDETWDLYRTDALAGVH-DEDRERIHASLTEYIHSGDSQYEIVYRLKR 458

Query: 154  GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD---------KKF 204
            G   YV +      I + + E    + F  V+ +           R           +  
Sbjct: 459  GDGGYVWVKNTLSLIEAESGE----KKFYAVYHDVSGEIAEKEQLRQQYKEMILQHYRTP 514

Query: 205  SHLHEIKKGHSSVEKEKYDIFSQQSP----PPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
                 I    +  + +  +I                ++    ++       +        
Sbjct: 515  DPNALIIGHCNITQNKILEIIDNTDSDLLRTFSTDRESFFIGVSSLIVDGTEQNTFLDMY 574

Query: 261  LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD-EGE 319
            L     ++    +    +N      K+  G          E     +   +    D   +
Sbjct: 575  LNEPALAAFRRNDTEQILNCYIKLPKEEKGRYVQFKVILVETPDTGDVTGILTVTDITEQ 634

Query: 320  NLTPETVDKCPIP----FFVYSHG----NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
             +T   + +  +                 +   N +   L +        I   L  ++ 
Sbjct: 635  TITNRILHQLSVTSYDFVIDLDLDSDNYTVLTNNKNSDRLPETSGSHSGRIREMLDKIIV 694

Query: 372  ---APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
                 + +++     +     ++      A   T +     +  MT    +        +
Sbjct: 695  PKDRAQYAESLEAGEIRRRLKEKGSYTF-AYSLTDEKGDIRTKNMTVSSIDLRLGRVCLV 753

Query: 429  PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
                   +  ++   ++ +   +                 +        N ++  L  Y 
Sbjct: 754  R-----TDITESLREQQGLLNMIA-------------YTFDLAC---FINISLGTLTMYT 792

Query: 489  VEDILRKPFTVFLEQNTPSVMN----------HYLTEILSLDLRQTLEKITLGSTKEEKL 538
             E +L K  + +  +     +                +    +   LE++    +  + +
Sbjct: 793  RETVL-KNLSPYFFERYDDTVEGFAANYGTEEERDEAVRQFRVSTMLERLKEKPSGYDFV 851

Query: 539  LSL---------RIIIKKLPFSSCYSLTMH-DISEWKQEKNK----LSHAKKIAEKESSH 584
                        +I +     +      +  D+++    + +    L  A ++AE+ +  
Sbjct: 852  FPYNGSAKLRYKQINVLWGDENHRTICLVRADVTDMLAAERQTKRSLEKALELAEEANRA 911

Query: 585  KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
            KS+FL+ +SH+IRTP+ AI+G + +            +  +    I  S   +L ++ND+
Sbjct: 912  KSEFLSAMSHDIRTPMNAIMGMTALA---CAHIDDQDKVSDCLKKISISSKHLLSLINDV 968

Query: 645  LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN-NIPRILADLRS 703
            LD+SKIE  ++ L    + L   + +  ++++  A    I       +    +   D+  
Sbjct: 969  LDMSKIERSQITLGRMKILLSRLMHDLAAIIEPQARAAGIHFYVRTDDICNEKFYGDVLR 1028

Query: 704  VKQIALNILSNAIHFTPSGGQIII------STTHTSNEEVILRVRDTGVGMTNYELEKAM 757
            + QI +NILSNAI FTP GG +        +     +      +RDTGVG+    LE   
Sbjct: 1029 LNQIFINILSNAIKFTPEGGTVDFMVEELPAVRCEDHVRYRFTIRDTGVGIKAEFLEHIF 1088

Query: 758  KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            +PF +  +S   R EGTGLGL + K +VD   G   + S   +GT+  +  
Sbjct: 1089 EPFTR--SSNTSRVEGTGLGLSITKGLVDLMGGVITVESKELQGTVFRVEL 1137



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 52/507 (10%), Positives = 136/507 (26%), Gaps = 58/507 (11%)

Query: 96  KEISEELPKTIGNYAFK---MIGMRLCDVSDILHIDPNNHIGD-LLKRQNTWYGKTTLWP 151
              S+ +P   G    +   +I     +++     D    +   +++       +     
Sbjct: 34  VYFSDGVPALSGYTVEEYRELIAGDAAELTYWEDADMVVSMARQVIRTHEVTEFEFRKQH 93

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
            EG  ++V + +          E  G     ++ +    ++ +     ++   + +    
Sbjct: 94  REGYIVWVRVQMKWC------GEEDGCP--LLLCIFHNISELKEAQLEMEHLVNSIPGGI 145

Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271
             +  V +     F        + +        +     D +    +        ++   
Sbjct: 146 ASYRVVGQHFIPTFY---SDGVMALSGHSREEYKDLIRDDALNIIYEQDRERVTAAAQAA 202

Query: 272 QEDFHTINLNQYTKKQYFGTLQNNS-KESFEYLSHRNHPSLSAYFDEGE-NLTPETVDKC 329
                 ++++   + +  G +  +        LS              E  L     ++ 
Sbjct: 203 LLSGEVLDVSYRMRHKDGGLIWIHLNGRRMGPLSESTRFYAVFTGMSSETRLFQSIANEM 262

Query: 330 PIPFFVYSHGN--LFYAN------PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
               ++    N  L Y N      P        K  D +    G        K   +   
Sbjct: 263 ADNIYIIDKDNYDLLYVNEPQKGSPCNRESVGKKCYDALYGKEGPCEFCCLNKYEPDGQE 322

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
             + +          S R     WN   +                         E  +  
Sbjct: 323 HEMKIS---GLDRYFSTRFRETDWNGIPA-------------------YVKYVRETTEEV 360

Query: 442 INKRKMEIEVMQLCSILEATSDGIAII----NREGIILSTNRAVSKLFGYPVED---ILR 494
             +R+ E       ++++    GIA++    +   +    +   ++L    +++   + R
Sbjct: 361 KTRREKERLEQYFQTVVKNLPGGIAVVKFGEDGSMVPEFISEGFAELTSMSLDETWDLYR 420

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC- 553
                 +       ++  LTE +     Q  E +      +   + ++  +  +   S  
Sbjct: 421 TDALAGVHDEDRERIHASLTEYIHSGDSQ-YEIVYRLKRGDGGYVWVKNTLSLIEAESGE 479

Query: 554 --YSLTMHDISEWKQEKNKLSHAKKIA 578
             +    HD+S    EK +L    K  
Sbjct: 480 KKFYAVYHDVSGEIAEKEQLRQQYKEM 506


>gi|320185069|gb|EFW59849.1| Hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Shigella flexneri CDC 796-83]
          Length = 1127

 Score =  276 bits (707), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 88/419 (21%), Positives = 163/419 (38%), Gaps = 12/419 (2%)

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
            W+  +                  +    +       ++ +  +E ++    ++ ++  +
Sbjct: 458 TWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISFRKALSDSLPN 517

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--NTPSVMNHYLTEILSLDL 521
              ++N +G ++S N A    F          P         +  S  +    E      
Sbjct: 518 PTYVVNWQGNVISHNSAFEHYFTADYYKNAMLPLENSDSPFKDVFSNAHEVTAETKENRT 577

Query: 522 RQTLEKIT-LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
             T       G  K        +        + Y     DI+E +   + L   +  A  
Sbjct: 578 IYTQVFEIDNGIEKRCINHWHTLCNLPASDHAVYICGWQDITETRDLIHALEVERNKAIN 637

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            +  KS FLA +SHEIRTP+++I+GF E++       L   + +E  +    +G  +L +
Sbjct: 638 ATVAKSQFLATMSHEIRTPISSIMGFLELLS---GSGLSKEQRVEAISLAYATGQSLLGL 694

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILA 699
           + ++LD+ KIESG   L  + V +   V          A  K I +  S    +   +  
Sbjct: 695 IGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPDHYLVKI 754

Query: 700 DLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMTNYELEKA 756
           D ++ KQ+  N+LSNA+ FT  G  +I  S  H  +   ++   + D+G G++  E ++ 
Sbjct: 755 DPQAFKQVLSNLLSNALKFTTEGAVKITTSLVHIDDNHAVIKMTIMDSGSGLSQEEQQQL 814

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            K + Q   S   +  G+GLGL + K ++    G   + S P  GT   I  P+  +  
Sbjct: 815 FKRYSQT--SAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVEISQQ 871


>gi|320173479|gb|EFW48677.1| Hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Shigella dysenteriae CDC 74-1112]
          Length = 1197

 Score =  276 bits (707), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 88/419 (21%), Positives = 163/419 (38%), Gaps = 12/419 (2%)

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
            W+  +                  +    +       ++ +  +E ++    ++ ++  +
Sbjct: 528 TWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISFRKALSDSLPN 587

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--NTPSVMNHYLTEILSLDL 521
              ++N +G ++S N A    F          P         +  S  +    E      
Sbjct: 588 PTYVVNWQGNVISHNSAFEHYFTADYYKNAMLPLENSDSPFKDVFSNAHEVTAETKENRT 647

Query: 522 RQTLEKIT-LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
             T       G  K        +        + Y     DI+E +   + L   +  A  
Sbjct: 648 IYTQVFEIDNGIEKRCINHWHTLCNLPASDHAVYICGWQDITETRDLIHALEVERNKAIN 707

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            +  KS FLA +SHEIRTP+++I+GF E++       L   + +E  +    +G  +L +
Sbjct: 708 ATVAKSQFLATMSHEIRTPISSIMGFLELLS---GSGLSKEQRVEAISLAYATGQSLLGL 764

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILA 699
           + ++LD+ KIESG   L  + V +   V          A  K I +  S    +   +  
Sbjct: 765 IGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPDHYLVKI 824

Query: 700 DLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMTNYELEKA 756
           D ++ KQ+  N+LSNA+ FT  G  +I  S  H  +   ++   + D+G G++  E ++ 
Sbjct: 825 DPQAFKQVLSNLLSNALKFTTEGAVKITTSLVHIDDNHAVIKMTIMDSGSGLSQEEQQQL 884

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            K + Q   S   +  G+GLGL + K ++    G   + S P  GT   I  P+  +  
Sbjct: 885 FKRYSQT--SAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVEISQQ 941


>gi|303233955|ref|ZP_07320604.1| PAS domain S-box protein [Finegoldia magna BVS033A4]
 gi|302494880|gb|EFL54637.1| PAS domain S-box protein [Finegoldia magna BVS033A4]
          Length = 567

 Score =  276 bits (707), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 80/366 (21%), Positives = 167/366 (45%), Gaps = 33/366 (9%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           +++     + +I +   +G+ ++++   +LS N++   LFG        +PF      N 
Sbjct: 232 ELQERSTTIKTITDNMREGLILLDKNINVLSVNKSAEFLFGASDSRYEGRPFISL---NR 288

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS---SCYSLTMHDIS 562
              ++  + +++S      +     G       + L + I  +      +   L + D S
Sbjct: 289 DLKIHSAIKDVISTKTAHHINIEMQG-------ILLSMYIAPVLDEENINGVLLFLVDES 341

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +  + +                + +F A VSHE+++PLT+I G++E+I+N    P     
Sbjct: 342 DKIKAE--------------KRRREFSANVSHELKSPLTSINGYAEMIENNMVSP---EN 384

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             ++A+ I + G  +L+++++++ +SK++    N+     + ++ + E I   Q   + K
Sbjct: 385 VSKFASIIHQEGLRLLELIDNIIKLSKLDESGDNVEKTLFNPEKIIDEIIKSNQNKLDSK 444

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           +I I T    N   I  +   +K++  N+++NAI +    G+I IS     N++  +   
Sbjct: 445 QIEIITDLQENCL-IYGNENLIKEMIENLVTNAIKYNKISGKIKISI-FKDNDKTKIICE 502

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG+G+     ++  + F  +  S+  + E TGLGL + K +VD + G   + S    GT
Sbjct: 503 DTGIGIAEKYQKRVFERFFVVDKSRSSQ-ESTGLGLSIIKHIVDIHDGTIELESKLDVGT 561

Query: 803 LIEIIF 808
            I I  
Sbjct: 562 KITITI 567


>gi|28868897|ref|NP_791516.1| sensor histidine kinase/response regulator GacS [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|28852136|gb|AAO55211.1| sensor histidine kinase/response regulator GacS [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 917

 Score =  276 bits (707), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 76/243 (31%), Positives = 139/243 (57%), Gaps = 8/243 (3%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  A+K A + S  KS+FLA +SHEIRTPL  I+GF+ +++     P    R  +Y   
Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSELTP----RQFDYLAT 325

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I++S + +L I+N++LD SKIE+GK+ L   P +L + + + ++++   A+ K + + + 
Sbjct: 326 IEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKHLELVSL 385

Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQI---IISTTHTSNEEVILRVRDTG 745
              + P  +  D   ++QI  N++SNAI FT  G  +   ++      + ++ + V+DTG
Sbjct: 386 VYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAMLEDETEEHAQLRISVQDTG 445

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+++ ++    + F Q  NS   +  GTGLGL ++K +++   G+  + STP +G+   
Sbjct: 446 IGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFW 505

Query: 806 IIF 808
           I  
Sbjct: 506 ISL 508


>gi|82544838|ref|YP_408785.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Shigella boydii Sb227]
 gi|81246249|gb|ABB66957.1| putative sensor for regulator EvgA [Shigella boydii Sb227]
          Length = 1197

 Score =  276 bits (707), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 88/419 (21%), Positives = 163/419 (38%), Gaps = 12/419 (2%)

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
            W+  +                  +    +       ++ +  +E ++    ++ ++  +
Sbjct: 528 TWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISFRKALSDSLPN 587

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--NTPSVMNHYLTEILSLDL 521
              ++N +G ++S N A    F          P         +  S  +    E      
Sbjct: 588 PTYVVNWQGNVISHNSAFEHYFTADYYKNAMLPLENSDSPFKDVFSNAHEVTAETKENRT 647

Query: 522 RQTLEKIT-LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
             T       G  K        +        + Y     DI+E +   + L   +  A  
Sbjct: 648 IYTQVFEIDNGIEKRCINHWHTLCNLPASDHAVYICGWQDITETRDLIHALEVERNKAIN 707

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            +  KS FLA +SHEIRTP+++I+GF E++       L   + +E  +    +G  +L +
Sbjct: 708 ATVAKSQFLATMSHEIRTPISSIMGFLELLS---GSGLSKEQRVEAISLAYATGQSLLGL 764

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILA 699
           + ++LD+ KIESG   L  + V +   V          A  K I +  S    +   +  
Sbjct: 765 IGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPDHYLVKI 824

Query: 700 DLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMTNYELEKA 756
           D ++ KQ+  N+LSNA+ FT  G  +I  S  H  +   ++   + D+G G++  E ++ 
Sbjct: 825 DPQAFKQVLSNLLSNALKFTTEGAVKITTSLVHIDDNHAVIKMTIMDSGSGLSQEEQQQL 884

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            K + Q   S   +  G+GLGL + K ++    G   + S P  GT   I  P+  +  
Sbjct: 885 FKRYSQT--SAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVEISQQ 941


>gi|6573134|gb|AAF17563.1| sensor protein EvgS1 [Escherichia coli]
          Length = 1197

 Score =  276 bits (707), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 91/419 (21%), Positives = 164/419 (39%), Gaps = 12/419 (2%)

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
            W+  +                  +    +       ++ +  +E ++    ++ ++  +
Sbjct: 528 TWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISSRKALSDSLPN 587

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--NTPSVMNHYLTEILSLDL 521
              ++N +G ++S N A    F          P         +  S  +    E      
Sbjct: 588 PTYVVNWQGNVISHNSAFEHYFTADYYKNAMLPLENSDSPFKDVFSNAHEVTAETKENRT 647

Query: 522 RQTLEKIT-LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
             T       G  K        +       ++ Y     DI+E +   N L   K  A K
Sbjct: 648 IYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLINALEVEKNKAIK 707

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            +  KS FLA +SHEIRTP+++I+GF E++       L   + +E  +    +G  +L +
Sbjct: 708 ATVAKSQFLATMSHEIRTPISSIMGFLELLS---GSGLSKEQRVEAISLAYATGQSLLGL 764

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILA 699
           + ++LD+ KIESG   L  + V +   V          A  K I +  S        +  
Sbjct: 765 IGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPEHYLVKI 824

Query: 700 DLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMTNYELEKA 756
           D ++ KQ+  N+LSNA+ FT  G  +I  S  H  +   ++   + D+G G++  E ++ 
Sbjct: 825 DPQAFKQVLSNLLSNALKFTTEGAVKITTSLGHIDDNHAVIKMTIMDSGSGLSQEEQQQL 884

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            K + Q   S   +  G+GLGL + K ++    G   + S P  GT   I  P+  +  
Sbjct: 885 FKRYSQT--SAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVEISQQ 941


>gi|115526880|ref|YP_783791.1| histidine kinase [Rhodopseudomonas palustris BisA53]
 gi|115520827|gb|ABJ08811.1| histidine kinase [Rhodopseudomonas palustris BisA53]
          Length = 450

 Score =  276 bits (707), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 71/360 (19%), Positives = 146/360 (40%), Gaps = 25/360 (6%)

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
            +++E   D   +++R G +L  N A ++L   P   +              + +   + 
Sbjct: 103 RAVVEGMPDPAVLLDRAGRVLHLNAAAAQL--VPALRLNELAQFALRSPEFVTALREAIA 160

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA 574
                     ++++ +    E  +  + +         C  +T HD++  ++ +      
Sbjct: 161 TA-QPRRANYVDRVPVDRWLELIITPVPVPTAFDGVDHCMLMTFHDLTPLRRVEE----- 214

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE-YANYIDRS 633
                     + DF+A  SHE+RTPL A+ GF + ++        + +  E +   +   
Sbjct: 215 ---------MRVDFVANASHELRTPLAALSGFIDTLQ---GPARDDAKARERFLGIMHAQ 262

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693
              +  +++DLL +S++E          V +   V + I  ++  A E+++++ T     
Sbjct: 263 ARRMARLIDDLLSLSRVELSAHVRPDAEVDIAPLVRQVIEGLEPLAQERQVVVETELPLE 322

Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDTGVGMT 749
           +  I  D   + ++  N++ NA+ +  SGG++++S           E    VRD G G+ 
Sbjct: 323 VATIAGDREELLRLFENLIENALKYGASGGRVVVSLGQADAADGTAEYRFAVRDFGPGIA 382

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
              L +  + F ++         GTGLGL L K +V+ + G+  I S   KG       P
Sbjct: 383 PEHLPRLTERFYRVDVGDSRAQGGTGLGLSLVKHIVNRHRGRLLIDSALGKGATFTACLP 442



 Score = 43.9 bits (102), Expect = 0.10,   Method: Composition-based stats.
 Identities = 23/245 (9%), Positives = 57/245 (23%), Gaps = 13/245 (5%)

Query: 218 EKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHT 277
            +  +   +Q +PPPH       +          D L+     L+ +  +          
Sbjct: 4   TRPPHQELAQSNPPPHR----PFAPAPPLTRQWADRLRHAAIILIAAGFALTALWLFAGL 59

Query: 278 INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP-FFVY 336
                     +   +              +             +    V+  P P   + 
Sbjct: 60  APG--RAVAAFLCIVAAALVPWRLNDGLPSREENLIVNPVQMPVVRAVVEGMPDPAVLLD 117

Query: 337 SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA 396
             G + + N +   L     ++++      S              +P      DR  +  
Sbjct: 118 RAGRVLHLNAAAAQLVPALRLNELAQFALRSPEFVTALREAIATAQPRRANYVDRVPVDR 177

Query: 397 SARL------HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450
              L          ++  +   +         +  E M  + +     + R     +   
Sbjct: 178 WLELIITPVPVPTAFDGVDHCMLMTFHDLTPLRRVEEMRVDFVANASHELRTPLAALSGF 237

Query: 451 VMQLC 455
           +  L 
Sbjct: 238 IDTLQ 242


>gi|116621995|ref|YP_824151.1| multi-sensor signal transduction histidine kinase [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116225157|gb|ABJ83866.1| multi-sensor signal transduction histidine kinase [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 665

 Score =  276 bits (707), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 94/622 (15%), Positives = 199/622 (31%), Gaps = 33/622 (5%)

Query: 192 DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD 251
           D   +   L+   S      K        ++   + ++             L        
Sbjct: 70  DSEHIECPLEGTASAQIATGKAVLCRSVAQHRFPADRALATLKAQAFVGIPLMTSAGGVC 129

Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
            VL         +   +    E F      +  +KQ    L+ + +    ++        
Sbjct: 130 GVLMAVYRKPAATLSVAKSLLEVFAPRAAAELERKQENDRLRESEQRYQAFVMLNADAMW 189

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
               ++   +     ++      +Y +G L   N +       +    +           
Sbjct: 190 RIELEQPIPIDLPEEEQIQQ---IYRYGYLAECNDAMARQYGLERASQLTGWRVSE---L 243

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
           +P  ++      +   R   +   ++  L  +         +                  
Sbjct: 244 SPLTTEGVREAIIQGIR---SGYHSTVELSPVDEEGNRRHILRTQWGIVE--QGMLQRIW 298

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
           G   +  + +  +R+++    Q+  +LE  +  + ++  +G I+  N+   +L G+   +
Sbjct: 299 GTTRDVTELKSIERELDASERQMSDLLETLNLLVVMMREDGAIVFCNKHFYQLTGWTAAE 358

Query: 492 ILRK-PFTVFLEQNTPSVMNHYLTEI-LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
              +  F + L      +         L        E   LG   E   ++      +  
Sbjct: 359 TKDRIWFELMLLPEDRKLARAAFQAANLQTGAPTHYESALLGPKGECWRVAWDSTCVRDA 418

Query: 550 FSSCYSL--TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
                       DISE+K  + +   A+++              V+H+    LT I G+S
Sbjct: 419 EQKIVMSANVGRDISEFKMLEAQFRQAQEL-----ESLGRLAGGVAHDFNNLLTVITGYS 473

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
            V+  ++     +         I R+      +   LL  S+ ++       EPV L   
Sbjct: 474 SVLLEKKS---PDDPAYPVLCEIRRTAEKGASLTRSLLAFSRRQA----PRPEPVDLTAL 526

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727
           ++     + L    + I + T+   ++  + AD   ++Q+  N++ NA    P GG + I
Sbjct: 527 IA-VDEPLLLRLLNENIHLVTNLQPSLNFVQADPGQIRQVLFNLVVNARDAMPHGGILTI 585

Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
           +T+ +    V L + DTGVGMT        +PF +            GLG+     ++  
Sbjct: 586 ATS-SDGSNVQLVISDTGVGMTEDVRRHLFRPFFRTDEECTAA----GLGMATTYRIIRQ 640

Query: 788 NMGKFYIFSTPAKGTLIEIIFP 809
           N G+  + S+P  G    I  P
Sbjct: 641 NGGQIEVDSSPGGGARFRIQLP 662


>gi|224368733|ref|YP_002602894.1| sensory box histidine kinase/response regulator [Desulfobacterium
           autotrophicum HRM2]
 gi|223691449|gb|ACN14732.1| sensory box histidine kinase/response regulator [Desulfobacterium
           autotrophicum HRM2]
          Length = 662

 Score =  276 bits (707), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 86/380 (22%), Positives = 165/380 (43%), Gaps = 24/380 (6%)

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
            + +  +R +  + ++L +IL+A  D I++ N EG  +S NRA   +     + I+ +  
Sbjct: 297 SELKSAERVLSEQKIRLQTILDAIPDFISLQNHEGRYVSVNRAFCDILAKQQDQIVGRFN 356

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSL 556
                +      N    +IL L      E   L +   + L  +++ + +          
Sbjct: 357 DDLFAEPLARQYNLEDHQILELGGSLVKENKFLKNKDTKWLHVVKVAVLQNHDRVGGLVC 416

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
           +  DI++ K+ + +L+HA+K+            A V+HEI TPL  I+G+++++      
Sbjct: 417 SGRDITQLKKVQEQLTHAQKM-----ESVGRLAAGVAHEINTPLGIILGYAQILLEDI-- 469

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
           P     Y +    I +   +   IV DLL  S+  S ++       +++ A+ E + +V+
Sbjct: 470 PPQGQTYKD-VATIVKQTRICSKIVADLLSFSRS-SQRI---ITTFNMNGAIEEVLDVVE 524

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-SNE 735
                  + +   +      I  D   +KQ+ +N+L+NA       G I I T    + +
Sbjct: 525 HTFGLSHVNVERIYDQPQLWIKGDKEKLKQVCVNLLNNAFDAIEENGTIQIKTVLAITKK 584

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
           EV + + DTG G+   +++K  +PF          G GTGLGL +   ++  + G   +F
Sbjct: 585 EVKIIISDTGHGIAQADMKKLFEPFYTTKGP----GRGTGLGLSVTFGIIKEHNGTIEVF 640

Query: 796 S------TPAKGTLIEIIFP 809
           S         +GT + +  P
Sbjct: 641 SPPLPEEKLERGTSVVVTLP 660



 Score = 41.9 bits (97), Expect = 0.41,   Method: Composition-based stats.
 Identities = 13/139 (9%), Positives = 32/139 (23%), Gaps = 6/139 (4%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDV-SDILHIDPNNHIGDLLKRQNTWYGKTTLW 150
            G    ++      +     +++G    D+ ++ L    N     +L+   +   +    
Sbjct: 330 EGRYVSVNRAFCDILAKQQDQIVGRFNDDLFAEPLARQYNLEDHQILELGGSLVKENKFL 389

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
             + T     + +A L  + R                      +       K  S     
Sbjct: 390 KNKDTKWLHVVKVAVLQNHDRVGGL-----VCSGRDITQLKKVQEQLTHAQKMESVGRLA 444

Query: 211 KKGHSSVEKEKYDIFSQQS 229
                 +      I     
Sbjct: 445 AGVAHEINTPLGIILGYAQ 463


>gi|153873106|ref|ZP_02001797.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
 gi|152070428|gb|EDN68203.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
          Length = 743

 Score =  276 bits (707), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 76/271 (28%), Positives = 131/271 (48%), Gaps = 26/271 (9%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E +  +  L    K  E  S +KS+FLA +SHE+RTPL +++  ++++   + G L + +
Sbjct: 13  EMETAQVALETKAKELELASQYKSEFLANMSHELRTPLNSLLILAQLLAENKKGNLSD-K 71

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ-LYANE 681
            +EYA  I  SG  +L ++ND+LD+SK+E+GKM ++ EPVSL + V+      +     E
Sbjct: 72  QMEYARTIHSSGAYLLTLINDILDLSKVEAGKMEVNAEPVSLTDLVTMVEQKFRYTDDEE 131

Query: 682 KRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTH--------- 731
             +  + + A  +P I   D   ++QI  N+LSNA  FT  G  I +             
Sbjct: 132 NNLAFQVTIAQEVPPIIYTDPLRLQQIINNLLSNAFKFTEQG-DIKLMVQRLELPPTPLE 190

Query: 732 -------------TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
                           + + + V DTG+G+   + +   + F Q   +      GTGLGL
Sbjct: 191 EGRREDWLPLGDGQQRKMITISVSDTGIGIPKDKQKIIFQAFQQADGTTSRSYGGTGLGL 250

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            +++ +     G   ++S   +G+L  +  P
Sbjct: 251 SISRQLARLLGGDLQLYSEEGQGSLFTLYLP 281


>gi|281611|pir||B41863 two-component regulatory protein lemA - Pseudomonas syringae
          Length = 929

 Score =  276 bits (707), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 76/243 (31%), Positives = 140/243 (57%), Gaps = 8/243 (3%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  A+K A + S  KS+FLA +SHEIRTPL  I+GF+ +++     P    R  +Y   
Sbjct: 282 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSELTP----RQFDYLGT 337

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I++S + +L I+N++LD SKIE+GK+ L   P +L + + + ++++   A+ K++ + + 
Sbjct: 338 IEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSL 397

Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQI---IISTTHTSNEEVILRVRDTG 745
              + P  +  D   ++QI  N++SNAI FT  G  +   ++      + ++ + V+DTG
Sbjct: 398 VYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAMLEDETEEHAQLRISVQDTG 457

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+++ ++    + F Q  NS   +  GTGLGL ++K +++   G+  + STP +G+   
Sbjct: 458 IGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFW 517

Query: 806 IIF 808
           I  
Sbjct: 518 ISL 520


>gi|330872980|gb|EGH07129.1| sensory box histidine kinase [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 584

 Score =  276 bits (707), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 85/416 (20%), Positives = 166/416 (39%), Gaps = 28/416 (6%)

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK--R 445
            + R      A         E    +T  P   A +      + GI  E +         
Sbjct: 193 IARRFGAPIEALAKAADRIGEGDYEVTL-PISSAAEMNLLTRRFGIMAEALRQHQATNID 251

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           ++     +L ++L++  DG+ +I+R+G +   N    +  G+    + +           
Sbjct: 252 ELLAGQQRLQAVLDSIDDGLLMIDRQGHLEHLNPVAQRQLGWDESRLGQSLGDALGRPEL 311

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISE 563
              ++  L         + L         E +LL+  +              + +HD++E
Sbjct: 312 DEQLHLVLRGGTLERAPEDLAIEI---DGESRLLTYSMTPVSHTKGHILGAVMVLHDVTE 368

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            +  +                +S+F+ R SHE+RTP+T  +  +  +  +R       R 
Sbjct: 369 QRAFE--------------RVRSEFVLRASHELRTPVTG-MHMAFGLLQERLHFAPETRE 413

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            +  N +      ++ ++NDLL+ S+ ++G   L   P S++  + EA +  +  A E+ 
Sbjct: 414 ADLLNTVTEEMQHLMQLINDLLNFSRYQNGLQKLKLAPCSIETLLEEARARFEDKALEQD 473

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
           I++       +PR+ AD   ++++  N+L NA+  TP  G I +       E  I+ V D
Sbjct: 474 IVLMLDMQEPMPRLHADQSQLERVLDNLLDNALRHTPQNGLIRLQ-ARRHGERAIISVED 532

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            G G+   +  +  +PF Q+      +  G GLGL L K +V  + G+  ++S P 
Sbjct: 533 NGEGIAYGQQGRIFEPFVQV----GRKKGGAGLGLALCKEIVQLHGGRMGVYSRPG 584



 Score = 44.2 bits (103), Expect = 0.086,   Method: Composition-based stats.
 Identities = 33/241 (13%), Positives = 69/241 (28%), Gaps = 9/241 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G+L+ ++    + +G    + +G  L D      +D       L+ R  T      
Sbjct: 274 IDRQGHLEHLNPVAQRQLGWDESR-LGQSLGDALGRPELDEQ---LHLVLRGGTLERAPE 329

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
              IE       +  +  P+        G     ++H          +  R +      H
Sbjct: 330 DLAIEIDGESRLLTYSMTPVSHTKGHILGA--VMVLHDVTEQRAFERV--RSEFVLRASH 385

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           E++   + +      +  +    P  R  + ++++TE   H    L  +       +   
Sbjct: 386 ELRTPVTGMHMAFGLLQERLHFAPETREADLLNTVTEEMQHLMQ-LINDLLNFSRYQNGL 444

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
              +    +I       +  F                   P L A   + E +    +D 
Sbjct: 445 QKLKLAPCSIETLLEEARARFEDKALEQDIVLMLDMQEPMPRLHADQSQLERVLDNLLDN 504

Query: 329 C 329
            
Sbjct: 505 A 505


>gi|320332967|ref|YP_004169678.1| PAS/PAC sensor signal transduction histidine kinase [Deinococcus
           maricopensis DSM 21211]
 gi|319754256|gb|ADV66013.1| PAS/PAC sensor signal transduction histidine kinase [Deinococcus
           maricopensis DSM 21211]
          Length = 634

 Score =  276 bits (707), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 78/596 (13%), Positives = 202/596 (33%), Gaps = 46/596 (7%)

Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES---F 300
            ++    D         L  +      ++    T +      +     +  + +      
Sbjct: 55  DDHVHPDDRERVLRDTELGVARGEPFQQEYRMFTGDGRVVWMRDRVTPIVQDGRLVKLGG 114

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY--SHGNLFYANPSFLLLTKYKSVD 358
             +      +        ++   +     P+   +     G++   N +FL +  Y    
Sbjct: 115 VMIDVTRQKAAEQRMRALQSRFEQVFAAAPVGITLTGLHDGHVIDTNDAFLDVIGYDRAT 174

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
            I    G         +S  +         ++       ++LH    +      +     
Sbjct: 175 VI----GSDNRTLNVWVSPADRAHIARTVEANGRVHQFESQLH--HRSGAVRDVLLSCEL 228

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
                         +  +  + +  +  +E    +  ++++ ++D I +++R+G I   +
Sbjct: 229 LDLQDAGGQPILLILTQDISERKRVEAALEASEARFRALVQNSTDIITVLDRQGAIQYAS 288

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK- 537
            +++ + GY + DIL +    ++  +    +      ++       +  ++  ST++ + 
Sbjct: 289 PSMTSILGYELPDILGEICLRYMHPDEHPEILEAFRVVVRGGTGAAVRLVSRFSTRDGEG 348

Query: 538 ---LLSLRIIIKKLPFSSCYSLTMHDISE--WKQEKNKLSHAKKIAEKESSHKSDFLARV 592
              L  +       P      +   D++E    Q   + S A+ +A ++ +      A +
Sbjct: 349 WRALEWVATNRLDDPNIHGIVMNSRDVTEAQAAQAALQESQARLLASEKLASLGRLTAGL 408

Query: 593 SHEIRTPLTAIIGF---SEVIKNQRFGPLGNP------------RYIEYANYIDRSGNLV 637
           +HEI TPL A + +   +  +  +    +G P               +     +++   +
Sbjct: 409 AHEINTPLAATMNYLHEAARLAQEYLDSIGAPGVNDDDHREIARELRQALGEAEQTAGRI 468

Query: 638 LDIVNDLLDISK-IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696
            + +  +   ++ + SG ++            SE ++++   A    I +          
Sbjct: 469 GEFIRRMRGHTRDVNSGAVD-----FDPGRLASETLAMLAHQARAANIALILDVTRTPLV 523

Query: 697 ILADLRSVKQIALNILSNAIHFTP--SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELE 754
           +  +     Q+  N++ NAIH      G ++ ++          LRV D G G+    L 
Sbjct: 524 VRGEPGRFTQVVTNLVVNAIHACEGGRGSRVTVTLDRV-QGRTELRVTDDGSGIPASVLP 582

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN-MGKFYIFSTPAKGTLIEIIFP 809
           +  +P     +     G+GTGLGL + + ++  +  G+  + +    GT   + FP
Sbjct: 583 RIFEPMFTTKD----VGKGTGLGLSIIRDIITGHFHGEIDVDTRVDAGTTFIVQFP 634



 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/395 (8%), Positives = 96/395 (24%), Gaps = 23/395 (5%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR-QNTWYGKTTLW 150
            G++ + ++     IG     +IG     ++  +      HI   ++        ++ L 
Sbjct: 154 DGHVIDTNDAFLDVIGYDRATVIGSDNRTLNVWVSPADRAHIARTVEANGRVHQFESQLH 213

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
              G    V +    L +     +        +           A  +  + +F  L + 
Sbjct: 214 HRSGAVRDVLLSCELLDLQDAGGQPILLI---LTQDISERKRVEAALEASEARFRALVQN 270

Query: 211 KKGHSSVEKEKYDIFSQQSPPP---HLRMKNKVSSLTEYYAHKD---DVLKTEKYPLLTS 264
                +V   +  I              + + +  +   Y H D   ++L+  +  +   
Sbjct: 271 STDIITVLDRQGAIQYASPSMTSILGYELPDILGEICLRYMHPDEHPEILEAFRVVVRGG 330

Query: 265 EESSLPEQEDFHTINLNQ-YTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
             +++     F T +       +       ++       ++ R+     A     +    
Sbjct: 331 TGAAVRLVSRFSTRDGEGWRALEWVATNRLDDPNIHGIVMNSRDVTEAQAAQAALQESQA 390

Query: 324 ETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
             +    +      + G     N        Y           L ++       D++   
Sbjct: 391 RLLASEKLASLGRLTAGLAHEINTPLAATMNYLHEAARLAQEYLDSIGAPGVNDDDHREI 450

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
              L ++       + R+                     +          +         
Sbjct: 451 ARELRQALGEAEQTAGRIGEFIRRMRGHTRDVNSGAVDFDPGRLASETLAMLAH------ 504

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILST 477
                +     +  IL+ T   + +    G     
Sbjct: 505 -----QARAANIALILDVTRTPLVVRGEPGRFTQV 534



 Score = 39.2 bits (90), Expect = 3.3,   Method: Composition-based stats.
 Identities = 24/313 (7%), Positives = 65/313 (20%), Gaps = 27/313 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK------RQNT 142
           +D  G ++  S  +   +G     ++G            D +  I +  +          
Sbjct: 278 LDRQGAIQYASPSMTSILGYELPDILGEICLRYMHP---DEHPEILEAFRVVVRGGTGAA 334

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSR--NREFSGFRGFGIVHVNRVDNDPRALGKRL 200
               +     +G        +A   +     +      R        +            
Sbjct: 335 VRLVSRFSTRDGEGWRALEWVATNRLDDPNIHGIVMNSRDVTEAQAAQAALQESQARLLA 394

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD-------- 252
            +K + L  +  G +                     +  + S+     + DD        
Sbjct: 395 SEKLASLGRLTAGLAHEINTPLAATMNYLHEAARLAQEYLDSIGAPGVNDDDHREIAREL 454

Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR------ 306
                +             +   HT ++N        G L + +     + +        
Sbjct: 455 RQALGEAEQTAGRIGEFIRRMRGHTRDVNSGAVDFDPGRLASETLAMLAHQARAANIALI 514

Query: 307 -NHPSLSAYFDEGENLTPETVDKCPI-PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364
            +                + V    +        G       +   +     +   +   
Sbjct: 515 LDVTRTPLVVRGEPGRFTQVVTNLVVNAIHACEGGRGSRVTVTLDRVQGRTELRVTDDGS 574

Query: 365 GLSTLLDAPKLSD 377
           G+   +       
Sbjct: 575 GIPASVLPRIFEP 587


>gi|317404462|gb|EFV84874.1| sensor protein [Achromobacter xylosoxidans C54]
          Length = 435

 Score =  276 bits (707), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 84/450 (18%), Positives = 174/450 (38%), Gaps = 32/450 (7%)

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
            L TL+     +    +   ++       + ++A +  + W       ++          
Sbjct: 3   WLRTLILVALWAAIALLAQWLIGDPAGWVLFSAALVVMLLWRSWRLHLVSHWARHPDTSP 62

Query: 425 PENMPQNGIEPEDVDT--RINKRKMEIEVMQLCSIL---EATSDGIAIINREGIILSTNR 479
           P ++         +    R   R++      +  +L   +A  DG   +N +  I   NR
Sbjct: 63  PASVGPWDDILAPLYRYTRARARELAETRDTMQGMLAAAQALPDGAVTLNEDFQIDWCNR 122

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
              +  G  +           L          ++           +  + LG   +E+L+
Sbjct: 123 MARQHLGLRLPADRGHNLLNLLRAP------EFVEYAHRASWPDPI-LVRLGQNGQERLM 175

Query: 540 SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
            +++       S+   L   D+++ ++ +                + DF+A VSHE+RTP
Sbjct: 176 MMQLTAY---ASNQRLLITRDVTQIERLETT--------------RRDFVANVSHELRTP 218

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           LT + GF E +++     L   +  +Y + +      +  IV DLL +S +ES   +   
Sbjct: 219 LTVLAGFLETLRDMPADALPPEQRAQYLDMMHEQAQRMQAIVEDLLTLSTLESSPGS-DP 277

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719
             V++   + +A   ++  +  + + I       +  +L     +     N+L+NA+ +T
Sbjct: 278 RAVNMGALLQKARQQIEALSGGRHV-IEWHIDETV-DVLGAETELTSALSNLLTNAVRYT 335

Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
           P GG I +     ++      V+DTG+G+    + +  + F ++   +     GTGLGL 
Sbjct: 336 PDGGTITVRWEREADGGGRYSVQDTGIGIPARHIPRLTERFYRVDRGRSRAVGGTGLGLA 395

Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           + K +   +  +  I S P KG+L  + FP
Sbjct: 396 ITKHIAMRHDAELLISSEPGKGSLFALRFP 425


>gi|302344035|ref|YP_003808564.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfarculus baarsii DSM 2075]
 gi|301640648|gb|ADK85970.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfarculus baarsii DSM 2075]
          Length = 838

 Score =  276 bits (707), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 83/654 (12%), Positives = 197/654 (30%), Gaps = 52/654 (7%)

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP---PPHLRMKNKVS 241
                        ++ ++ F  L +       V+          +P         +  + 
Sbjct: 75  RHVADVEAKERAVEQKERLFRQLADNISEALWVQNVSSGRVVYANPRYEDVFGLPRQGLM 134

Query: 242 SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301
           +    +                    +   Q      + +          L++       
Sbjct: 135 ADPLDFLRGVHPDDAPDLRDALGRGRAGQRQFRLLWPDGSTRWVDWREIDLESTDGPLLA 194

Query: 302 YLS--HRNHPSLSAYFDEGENLTPETVDKCPI-PFFVYSHGNLFYANPSFLLLTKYKSVD 358
            L+    +            +LT   +D   +    +     +   N        +   +
Sbjct: 195 RLAQDITDDRDRLGQMRRQRDLTWRYLDVAGVIMVAIGPDETVRMINRKGCEALGWAEAE 254

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
            +         L     +D       + +  D +   A    + +         + +   
Sbjct: 255 AL-GVNWFDNFL----PADAREQTRNLFHAMDASYPQAREHENLVLTKGGGLRLVKWRNV 309

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
              ++            +  + R N         +L   +E  ++G+ I + +G+I   N
Sbjct: 310 ALRDEQGRFDGCISSGEDVTEQRRNM----ESRRRLTLAVEHVAEGVLITDTKGLIEYAN 365

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
            A + + G     ++ + +          V    + + +                     
Sbjct: 366 SAAAAIAGLAQGGLVGQNWFELAAGGQAPV---AMAQAMRDGEVWRGVFDLRRPDGPGAE 422

Query: 539 LSLRIIIKKLPFS--SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
           + L            + Y + + D++  +  + KL  A+K+            + ++H+ 
Sbjct: 423 MELTASPVLSGPGLVANYVVLIRDVTHERLLERKLRQAQKM-----EAIGTLASGITHDF 477

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
              L AIIG++E+     +    +    +    +  +G+   D+V  +L  S+    +  
Sbjct: 478 NNILGAIIGYAELCL---WDLSDDSPLRQNLEQVLVAGDRAKDLVQQILTFSR----QAE 530

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716
              + ++L   + E++ L++       + +R   +     ++AD   ++Q+ +N+ +NA 
Sbjct: 531 QEKKALNLGPVIKESLKLMRATLPT-TVELRQDISAEPCLVMADPVQMQQVVMNLCTNAA 589

Query: 717 HF-TPSGGQIIISTTHTS--------------NEEVILRVRDTGVGMTNYELEKAMKPFG 761
           H      G I ++                      + L V D G G+    +EK   P+ 
Sbjct: 590 HAIGDRPGMIQVTLKQLDVDRDRAASHPDLAAGRYLRLSVGDNGRGIAPEHIEKIFDPYF 649

Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
                    G+GTGLGL     +V  + G   ++S P +G    I  PL D + 
Sbjct: 650 TTKKP----GQGTGLGLSTVHGIVKTHGGVINVYSEPGQGATFSIWLPLADEAE 699



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/371 (9%), Positives = 83/371 (22%), Gaps = 23/371 (6%)

Query: 93  GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPI 152
           G +   +       G     ++   L D    +H D    + D L R      +  L   
Sbjct: 113 GRVVYANPRYEDVFGLPRQGLMADPL-DFLRGVHPDDAPDLRDALGRGRAGQRQFRLLWP 171

Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212
           +G+     +D   + + S +          +      D D     +R         ++  
Sbjct: 172 DGSTR--WVDWREIDLESTDGPLLAR----LAQDITDDRDRLGQMRRQRDLTWRYLDVAG 225

Query: 213 GHSSVEKEKYDIFSQQ----SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY--PLLTSEE 266
                      +                +    +  + +   D   +T      +  S  
Sbjct: 226 VIMVAIGPDETVRMINRKGCEALGWAEAEALGVNWFDNFLPADAREQTRNLFHAMDASYP 285

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
            +   +    T        K     L++        +S     +      E        V
Sbjct: 286 QAREHENLVLTKGGGLRLVKWRNVALRDEQGRFDGCISSGEDVTEQRRNMESRRRLTLAV 345

Query: 327 DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
           +       +     L     S        +   +               +   A   +  
Sbjct: 346 EHVAEGVLITDTKGLIEYANSAAAAIAGLAQGGLVGQNWFE------LAAGGQAPVAMAQ 399

Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
              D         +  ++        M        +          +  +    R+ +RK
Sbjct: 400 AMRDGEVWRG---VFDLRRPDGPGAEMELTASPVLSGPGLVANYVVLIRDVTHERLLERK 456

Query: 447 MEIEVMQLCSI 457
           +  +  ++ +I
Sbjct: 457 LR-QAQKMEAI 466



 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/308 (8%), Positives = 72/308 (23%), Gaps = 9/308 (2%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCD-VSDILHIDPNNHIGDLLKRQNTWYGKT 147
           I     ++ I+ +  + +G    + +G+   D        +   ++   +        + 
Sbjct: 231 IGPDETVRMINRKGCEALGWAEAEALGVNWFDNFLPADAREQTRNLFHAMDASYPQAREH 290

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
               +        +    + +      F G    G               +RL     H+
Sbjct: 291 ENLVLTKGGGLRLVKWRNVALRDEQGRFDGCISSG--EDVTEQRRNMESRRRLTLAVEHV 348

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
            E      +  K   +  +  +       +  +     +               +   E 
Sbjct: 349 AEGV--LITDTKGLIEYANSAAAAIAGLAQGGLVGQNWFELAAGGQAPVAMAQAMRDGEV 406

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP--ET 325
                 D    +      +     + +       Y+      +     +         E 
Sbjct: 407 WRG-VFDLRRPDGPGAEMELTASPVLSGPGLVANYVVLIRDVTHERLLERKLRQAQKMEA 465

Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
           +         +   N+  A   +  L  +   DD  +   L  +L A   + +   + + 
Sbjct: 466 IGTLASGI-THDFNNILGAIIGYAELCLWDLSDDSPLRQNLEQVLVAGDRAKDLVQQILT 524

Query: 386 LYRSDRTC 393
             R     
Sbjct: 525 FSRQAEQE 532


>gi|293415651|ref|ZP_06658294.1| hybrid sensory histidine kinase [Escherichia coli B185]
 gi|291433299|gb|EFF06278.1| hybrid sensory histidine kinase [Escherichia coli B185]
          Length = 1197

 Score =  276 bits (707), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 89/419 (21%), Positives = 162/419 (38%), Gaps = 12/419 (2%)

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
            W+  +                  +    +       ++ +  +E ++    ++ ++  +
Sbjct: 528 TWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISFRKALSDSLPN 587

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--NTPSVMNHYLTEILSLDL 521
              ++N +G ++S N A    F          P         +  S  +    E      
Sbjct: 588 PTYVVNWQGNVISHNSAFEHYFTADYYKNAMLPLENSDSPFKDVFSNAHEVTAETKENRT 647

Query: 522 RQTLEKIT-LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
             T       G  K        +        + Y     DI+E +   + L   +  A  
Sbjct: 648 IYTQVFEIDNGIEKRCINHWHTLCNLPASDHAVYICGWQDITETRDLIHALEVERNKAIN 707

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            +  KS FLA +SHEIRTP+++I+GF E++       L   + +E  +    +G  +L +
Sbjct: 708 ATVAKSQFLATMSHEIRTPISSIMGFLELLS---GSGLSKEQRVEAISLAYATGQSLLGL 764

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILA 699
           + ++LD+ KIESG   L  + V +   V          A  K I +  S        +  
Sbjct: 765 IGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPEHYLVKI 824

Query: 700 DLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMTNYELEKA 756
           D ++ KQ+  N+LSNA+ FT  G  +I  S  H  +   ++   + D+G G++  E ++ 
Sbjct: 825 DPQAFKQVLSNLLSNALKFTTEGAVKITTSLVHIDDNHAVIKMTIMDSGSGLSQEEQQQL 884

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            K + Q   S   +  G+GLGL + K ++    G   + S P  GT   I  P+  T  
Sbjct: 885 FKRYSQT--SAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVEITQQ 941


>gi|152061169|dbj|BAF73628.1| sensor histidine kinase/response regulator GacS [Pseudomonas
           syringae pv. tabaci]
          Length = 905

 Score =  276 bits (707), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 76/243 (31%), Positives = 140/243 (57%), Gaps = 8/243 (3%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  A+K A + S  KS+FLA +SHEIRTPL  I+GF+ +++     P    R  +Y   
Sbjct: 263 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSELTP----RQFDYLGT 318

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I++S + +L I+N++LD SKIE+GK+ L   P +L + + + ++++   A+ K++ + + 
Sbjct: 319 IEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSL 378

Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQI---IISTTHTSNEEVILRVRDTG 745
              + P  +  D   ++QI  N++SNAI FT  G  +   ++      + ++ + V+DTG
Sbjct: 379 VYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAMLEDETEEHAQLRISVQDTG 438

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+++ ++    + F Q  NS   +  GTGLGL ++K +++   G+  + STP +G+   
Sbjct: 439 IGLSSQDVRALFQAFSQADNSPSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFW 498

Query: 806 IIF 808
           I  
Sbjct: 499 ISL 501


>gi|33466068|gb|AAQ19473.1| histidine kinase D5 [Emericella nidulans]
          Length = 994

 Score =  276 bits (707), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 88/554 (15%), Positives = 185/554 (33%), Gaps = 82/554 (14%)

Query: 325 TVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
            ++  P+  F+     G + + N  F    + +  +        +          +N   
Sbjct: 1   MLNSVPLHLFLAKPQSGEVIWTNSKFDAYRRSQPQEQKSRDPWQN----IHDSERDNVAT 56

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
                    +      R+     +        F      +   E +   G   +  +  +
Sbjct: 57  KWAKALLTGSQFTERVRVKRF-NDESAYRWFIFRANPLLSSTGEVLYWIGSFLDIHEQHV 115

Query: 443 NKRKMEIEVMQL------CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
            + K   E  +        +   +    +        ++  N       G  +ED L   
Sbjct: 116 TELKAAQEREKFAIDAKYRAFSNSVPQIVFEATEVRGLIFVNEQWHLYTGQNLEDALNFG 175

Query: 497 FTVFLEQNT---------------------------------------PSVMNHYLTEIL 517
           F   +  +                                         +   + L E++
Sbjct: 176 FAKHVHHDDLEKCGLLSIYLASGAQKNATTAQSSEQPPEPSGPRAENQEARFGNRLDELV 235

Query: 518 SLDLRQTLEKI---------TLGSTKEEKLLSLRIIIKKLP------FSSCYSLTMHDIS 562
              +                    +K        + + ++         + +  T  DI+
Sbjct: 236 KRGVASVQRDENGRVFYSTEIRLRSKGGDFRWHLVRLVRVETSSFGSGEASWYGTCTDIN 295

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           + K  + +L+ A +    +   K+ F + +SHEIRTPL  I+G    I +          
Sbjct: 296 DRKNLERELNKAMQQLNNQMESKTKFFSNMSHEIRTPLNGILGTIPFILDTSLDT----D 351

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                + I  S   + + V+++LD+S++E+GKM+L      +   + + I  V   A +K
Sbjct: 352 QRRMLDTIQNSSTNLRESVDNILDVSRVEAGKMSLVGSWFHVRSVIEDVIDTVSSRAIDK 411

Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI--- 738
            + +      ++P  ++ D   ++QI +N++ NA+ FT  G +I I  +   +   I   
Sbjct: 412 GLEMNYLMDVDVPPMVIGDRFRIRQILINLVGNAVKFTAQG-EIHIRCSIYHDPNAIHKP 470

Query: 739 ------LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
                   V DTG G +  + E+ M+ F Q+  +   +  G+GLGL L+K +V+ + G+ 
Sbjct: 471 TEILMNFDVVDTGKGFSAQDAERLMQRFSQLGTNASQQNAGSGLGLFLSKQLVEMHGGRL 530

Query: 793 YIFSTPAKGTLIEI 806
              S   +G     
Sbjct: 531 TPSSKEGQGAKFSF 544


>gi|59714199|ref|YP_206974.1| two component sensory histidine kinase [Vibrio fischeri ES114]
 gi|59482447|gb|AAW88086.1| two component sensory histidine kinase [Vibrio fischeri ES114]
          Length = 864

 Score =  276 bits (707), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 83/253 (32%), Positives = 134/253 (52%), Gaps = 10/253 (3%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I++  Q + KL + K+ AE  +  K+ FLA +SHEIRTPL  IIG S V+   +  P+  
Sbjct: 333 IAKRHQNEKKLINEKEEAENANKAKTTFLANMSHEIRTPLNGIIGMSGVLAETKLTPI-- 390

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
              ++Y N I+ S   +L ++ND+LD+SKIE+G   ++ +P ++ E + + +S+    A 
Sbjct: 391 --QLDYLNTIETSSQTLLVLINDILDLSKIEAGNFAIYSQPSNVREVIFDTLSIDIAKAT 448

Query: 681 EKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIIST----THTSNE 735
           EK + +    + ++P  L  D   VKQI +N+ SNA+ FT  G  I IS        +  
Sbjct: 449 EKNLDLHIHISPDVPNFLTLDEHRVKQILMNLTSNAMKFTHKGF-ISISVNFSHRVENEG 507

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            + + V+D+G+G+     E  + PF Q  +S   R  GTGLGL +   +++   G   I 
Sbjct: 508 YLTIAVKDSGIGINTNAKENILNPFIQGDSSITRRFGGTGLGLTITNQLIELMGGTLDIE 567

Query: 796 STPAKGTLIEIIF 808
           S   KG+      
Sbjct: 568 SEQEKGSRFSFRI 580


>gi|284035319|ref|YP_003385249.1| PAS/PAC sensor signal transduction histidine kinase [Spirosoma
           linguale DSM 74]
 gi|283814612|gb|ADB36450.1| PAS/PAC sensor signal transduction histidine kinase [Spirosoma
           linguale DSM 74]
          Length = 674

 Score =  276 bits (707), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 86/646 (13%), Positives = 211/646 (32%), Gaps = 63/646 (9%)

Query: 213 GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ 272
            +   +     +F          +  +V   T+     D     +              +
Sbjct: 46  DNVLGDPNLLRMFGIHESAERTSLPLRV--FTDSIHPDDRPRVIQLIDQGVQSGRPYEAE 103

Query: 273 EDFHTINLNQ---YTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
                 N  +      +  +   Q     S   +   +   +       E     +V+  
Sbjct: 104 YRIVVNNQTRWVLARGRLTYTDTQQPFAFSGVLVDVTDRKEVELRSQIAETSFRLSVESA 163

Query: 330 PIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR 388
            +  + YS        +     L        I+ +  L  L            + +    
Sbjct: 164 RMGTWDYSPLTGTLIWSDRTKELFGLPPTATIDYSVFLQGLHADD---RARTDQMIQAVL 220

Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK---- 444
              +         T+    +    +        N+        G   +    +  +    
Sbjct: 221 QPGSSGRFDCEYRTLGIEDKQLRWVRANGQALFNEQGIANRFIGTVIDITADKEAESLLQ 280

Query: 445 -------RKMEIEVMQLCSILEATSDGIA----IINREGIILS-----TNRAVSKLFGYP 488
                  R +E + ++L + L+A+ + I     I +  G I+       N AV K     
Sbjct: 281 RRVDEQTRILEQQALELRTTLDASLNSIIAMTAIRDETGTIVDFMMNTANEAVIKSNFMT 340

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
            + I+ +        N  S        ++     +   +        E    +  +    
Sbjct: 341 PDQIIGRTMLTVFPGNKDSGFFDLYARVVETGQAEQSSQYYRDEFGLEGWFEVSAVK--- 397

Query: 549 PFSSCYSLTMHDISEWKQEK-------NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
             S+   +T ++I++ KQ +        +L  A    ++ + +   F    SH+++ PL 
Sbjct: 398 QGSNGVVITYNNITDRKQAELAAQLQERELKDANVELQRSNENLQQFAHIASHDLQEPLR 457

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
            I  FS++++NQ    L +    +    I +S   +  ++ DLL  S++ + + +     
Sbjct: 458 RIQAFSDILQNQFVDSLSDGE-RDMVRRIQKSAQRMQMLIKDLLLYSQVSTQRDSFTIVS 516

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           + +   + + ++ +++   EK   +  S    +P +      ++Q+  N+++NA+ F  +
Sbjct: 517 LDI--VLEDVVTDLEMTIAEKNATVDVS---PLPSVYGSASRLRQLFQNLITNALKFCQT 571

Query: 722 GGQIIISTTHTS---------------NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
           G   +I   + +                   ++ V D G+G      ++   PF ++  +
Sbjct: 572 GVPPLIEIRYRTAQPSELPPVLLNDSNQAFWLITVTDNGIGFDERYKDRIFTPFQRLHKT 631

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
                 GTG+GL +++ + +++ G   + S   KG+  ++  P+ +
Sbjct: 632 ---SYSGTGIGLAISQRVTESHGGAIDVTSQDGKGSTFKVFLPVVN 674


>gi|327395012|dbj|BAK12434.1| sensor protein BarA BarA [Pantoea ananatis AJ13355]
          Length = 922

 Score =  276 bits (707), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 91/421 (21%), Positives = 174/421 (41%), Gaps = 25/421 (5%)

Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
           A  A    +      +L +   P        + +P    +P          +++++ ++L
Sbjct: 125 AIRALPEDVSVEGSGNLLILRKPIISERYAVDELPGQDAKPAGNPLGYVAIELDLQSVRL 184

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
               E       +     ++L        LF Y +   +  P    +             
Sbjct: 185 QQYRE-------VFIATLMLLFCLCIAM-LFAYRLMRDVTGPIRNMVSTVDR-----IRR 231

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN----K 570
             L   +   +             +++ +                D+ E  ++      +
Sbjct: 232 GQLDSRVEGHMLGELSILKNGINAMAMSLTAYHEEMQHNIDQATWDLRETLEQLEIQNVE 291

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           L  AKK A++ +  KS+FLA +SHE+RTPL  ++GF+  +              +Y   I
Sbjct: 292 LDLAKKRAQEAARIKSEFLANMSHELRTPLNGVLGFTRQMLKTPLRTT----QRDYMLTI 347

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
           +RS N +L I+ND+LD S++E+GK+ L   P  L   + E + L+   A+EK + +    
Sbjct: 348 ERSANNLLSIINDVLDFSRLEAGKLMLESIPFPLRATLDETLVLLAPSAHEKGLELTVVC 407

Query: 691 ANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDTGV 746
            N++P  ++ D   ++QI +N++ NAI FT  G    ++   T   ++ E+ ++VRDTG+
Sbjct: 408 DNSVPDNVIGDALRLQQILINLMGNAIKFTEKGTINLRVEQHTITATHVELEIQVRDTGI 467

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G++  +  +  + F Q   S   R  G+GLGL + + +V    G+    S    G+   +
Sbjct: 468 GISEEQQAQLFQAFRQADASISRRHGGSGLGLVITQKLVREMNGEITFVSRQNHGSTFWV 527

Query: 807 I 807
            
Sbjct: 528 R 528


>gi|325293290|ref|YP_004279154.1| two component sensor kinase [Agrobacterium sp. H13-3]
 gi|325061143|gb|ADY64834.1| two component sensor kinase [Agrobacterium sp. H13-3]
          Length = 511

 Score =  276 bits (707), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 98/249 (39%), Positives = 158/249 (63%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I+E +   +    A++ AE+ +  KS FLA +SHE+RTPL AI+GFSEV+  +  GPL N
Sbjct: 238 IAELEVANSMSDEARRRAEEANLAKSRFLASMSHELRTPLNAILGFSEVMSAEVLGPLNN 297

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
           P Y EY+  I RSG  +LD++N++LD+S+IE+G+ +L+ E VS+ E   + I ++QL A 
Sbjct: 298 PLYKEYSGDIHRSGQHLLDLINEILDLSRIEAGRYDLNEEAVSMLEIAEDCIGMIQLRAR 357

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
            K I I   F +++P++ AD +S++Q+ LN+LSNA+ FTP GG+I++    T+     + 
Sbjct: 358 AKTIRISQQFESSLPQVWADEKSIRQVILNLLSNAVKFTPQGGEILVKAGWTAGGGQYVS 417

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           ++D G G+   E+   +  FGQ   + +   +GTGLGLP+ +A++  + G+F + S   +
Sbjct: 418 IKDNGPGIPEEEIPVVLSAFGQGSIAIKSAEQGTGLGLPIVQAILAKHDGQFILKSKLRE 477

Query: 801 GTLIEIIFP 809
           GT    I P
Sbjct: 478 GTEGIAILP 486


>gi|288554259|ref|YP_003426194.1| two-component sensor histidine kinase [Bacillus pseudofirmus OF4]
 gi|288545419|gb|ADC49302.1| two-component sensor histidine kinase [Bacillus pseudofirmus OF4]
          Length = 471

 Score =  276 bits (707), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 56/231 (24%), Positives = 112/231 (48%), Gaps = 3/231 (1%)

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
              ++     +SHE+RTPLT   G+ E++ N           ++Y   + +    +  ++
Sbjct: 238 EQQRTQLFVDISHELRTPLTYFKGYVEILLNGE--AKSEEDKVKYLTLLYKQSGRLQRLI 295

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701
            DL D+S +E     L    +SL+  +  A+ L+     +K I +    +     IL D 
Sbjct: 296 QDLFDLSTMEQKGFTLQETQISLETVMINALDLIGPSIEQKEIELHVQLSPFPIYILGDE 355

Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761
             ++Q+ +N+L NA  ++ +GG I +  T+  N   I+ V D G+G+   ++ +  +   
Sbjct: 356 YRLQQVIINLLENAKKYSSAGGVIKV-LTYKDNNNCIIEVIDYGIGIPKKDIHRIWERLY 414

Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
           ++  S+     G+GLGL + K +++ + G+  + S   KG+  +II P+ +
Sbjct: 415 RVDKSRSRETGGSGLGLTICKRIIELHGGQIIVESEEGKGSTFKIILPILE 465


>gi|284054567|ref|ZP_06384777.1| two-component hybrid sensor and regulator histidine kinase
           [Arthrospira platensis str. Paraca]
          Length = 812

 Score =  276 bits (707), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 73/257 (28%), Positives = 135/257 (52%), Gaps = 16/257 (6%)

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP--RY 623
           Q   +L  AK+ AE  +  KS FLA +SHE+RTPL AI+GF++++  Q      +    +
Sbjct: 425 QRTAELRQAKENAEVANQAKSQFLAHMSHELRTPLNAILGFTQLMIRQISLENNHNLNNF 484

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            ++   I RSG  +L ++ND+LD+SKIE+GK++L+     L   +     +  + A  + 
Sbjct: 485 RDHLYIIQRSGEHLLQLINDVLDMSKIEAGKISLNINNFDLWSLLDSLEEMFSIRAASEG 544

Query: 684 ILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE------ 736
           + +    + N+PR I +D + ++Q+ +N++ NA+ FT +G  + + +             
Sbjct: 545 LKLIFVRSPNLPRYINSDEQKLRQVLINLIGNAVKFTENGS-VTLHSQVIDPPNQIDNPQ 603

Query: 737 -----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
                +   V DTG G+   ++++  +PF Q    ++ + +GTGLGLP+++  V    G 
Sbjct: 604 PPPMVLQFTVEDTGPGIAPADIDQLFEPFLQTETGRKYQ-QGTGLGLPISQQFVQLMGGD 662

Query: 792 FYIFSTPAKGTLIEIIF 808
             + ST   G++ +   
Sbjct: 663 ISVSSTLGVGSVFKFKI 679


>gi|156050625|ref|XP_001591274.1| hypothetical protein SS1G_07900 [Sclerotinia sclerotiorum 1980]
 gi|154692300|gb|EDN92038.1| hypothetical protein SS1G_07900 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 1117

 Score =  276 bits (707), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 95/568 (16%), Positives = 198/568 (34%), Gaps = 76/568 (13%)

Query: 304 SHRNHPSLSAYFDEGENLTPETV-DKCPIPFFVYSHGNLFYA-NPSFLLLTKYKSVDDIE 361
             +          +    + ET+ D  P   +  +        +  +   T     + ++
Sbjct: 302 EIQKFEDYLMEKQQNLLRSHETICDLMPHLVWTTTPDGYGDWYSKRWYEYTGMSEEECLD 361

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
             G   T+            +     R           +  ++ +      M        
Sbjct: 362 -TGYRRTIHPDDWSFLVEKWEEGRRTRQQ-----CEVEVRYLRHDG-VYRWMHTRAQPLV 414

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
           +     +   G   +  D  +++ + +    Q+ ++L      +  ++   ++      +
Sbjct: 415 DGNGNVLKWYGTNTDITDVVMSRIEAKRNKHQMLTVLAHAEVSLFCVDENRLVTMAEGGM 474

Query: 482 S-----KLFGYPVEDILRKPFTVFLEQNTPSVMNHYL---------------------TE 515
                 +       +++ K     ++      +   L                      +
Sbjct: 475 LWGTKPENLSESKANLIGKDIIEIMQGTQTGGLPGRLFLLLHQSFININLLTGHENSILQ 534

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-----CYSLTMHDISE-WKQEKN 569
           IL+  +     +  +G       L   +                     DI++  K+ + 
Sbjct: 535 ILAGKVEMATCEEKIGDRSYRTRLVADLEHSSDDGGQVPKVIGCLGLSIDITDVEKRAQL 594

Query: 570 KLSHAKKIAEK-----ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           ++ + + + E+      S  KS FLA            IIG  +++              
Sbjct: 595 EIDNTRLMLEEQAAKDSSKMKSQFLA----------NGIIGMVDLLSED---TTLTSSQR 641

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           EY + I  SG  +L IVND+LD SKIESG++++   P +L   V E   L+ ++AN+K +
Sbjct: 642 EYVSSIQLSGRALLTIVNDILDFSKIESGRLDIEEVPFNLCSIVGELCKLLSIFANKKNL 701

Query: 685 LIRTS--FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS--------N 734
                     ++  +L D   ++Q+  N+L+N++ FT +G  + +S             N
Sbjct: 702 GFTYENEVDEDL-EVLGDPGRIRQVLSNLLTNSLKFTENGS-VKMSVKGKRIPQSDSIGN 759

Query: 735 EEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
           + V +   + DTG+G++   L+K  KPF Q  +S      GTGLGL +++ +     G  
Sbjct: 760 DRVEISFVITDTGIGISKTTLKKLFKPFSQGDSSTARLYGGTGLGLTISRNLASLMSGTI 819

Query: 793 YIFSTPAKGTLIEIIFPLYDTS---HPH 817
            + S    G++     PL  +S   +PH
Sbjct: 820 ALKSEEGVGSIATFTIPLKISSYCRYPH 847



 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/287 (10%), Positives = 70/287 (24%), Gaps = 34/287 (11%)

Query: 324 ETVDKCPIPFFVYSHGNLFY-ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS--DNNA 380
              D      F+ +     Y AN     +      + +    G    +    L   D   
Sbjct: 185 AVFDNVDTAAFLQTVDGESYLANRKAREILG----ECVGGESGCEGTIFRDALQIWDETF 240

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNR------ENSLAMTFIPFEKANQFPENMPQNGIE 434
            + +         +A + R               + +          +     +      
Sbjct: 241 TRQLPFDEYPGVVLAKTQRPFADYRCGFIHPISGDRITTIVTGECLYDVAGAFLGAICWC 300

Query: 435 PEDVDTRINKRKMEIEVMQLCS---ILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
            E    +     ME +   L S   I +     +     +G     ++   +  G   E+
Sbjct: 301 EEI--QKFEDYLMEKQQNLLRSHETICDLMPHLVWTTTPDGYGDWYSKRWYEYTGMSEEE 358

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
            L   +   +  +  S +     E      +   E        +     +    + L   
Sbjct: 359 CLDTGYRRTIHPDDWSFLVEKWEEGRRTRQQC--EVEVRYLRHDGVYRWMHTRAQPLVDG 416

Query: 552 SC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
           +     +  T  DI++    + +             +K   L  ++H
Sbjct: 417 NGNVLKWYGTNTDITDVVMSRIE----------AKRNKHQMLTVLAH 453


>gi|117921319|ref|YP_870511.1| PAS/PAC sensor signal transduction histidine kinase [Shewanella sp.
           ANA-3]
 gi|117613651|gb|ABK49105.1| PAS/PAC sensor signal transduction histidine kinase [Shewanella sp.
           ANA-3]
          Length = 432

 Score =  276 bits (707), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 70/370 (18%), Positives = 146/370 (39%), Gaps = 33/370 (8%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           R    ++   + +     EA  D   +++ E  IL  N+    + G+       +     
Sbjct: 87  RRRVGQLAALLGRFRQGAEALPDAAVVLDSEHNILWCNKLAQLILGFVWPQDNGQRIDNL 146

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
           +     S        I +   +  L         + +LL +RI+           L   D
Sbjct: 147 IRHPDFSAY------IKAGKYKDPL--ELASPVSDRRLLEIRIMAY---GDRQLLLIARD 195

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I+  +Q +                + +F+A VSHE++TPLT + G+ E++++       N
Sbjct: 196 ITRIRQLEG--------------MRKEFVANVSHELKTPLTVLQGYLEMMQSMAEPGSMN 241

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIE-SGKMNLHFEPVSLDEAVSEAISLVQLYA 679
            +       + +    +  +V  LL +S+IE +  +NL    V++ + +       +  A
Sbjct: 242 AKP---LALMQQQTRRMQSMVEQLLVLSRIEDAADINLENT-VNMAQLMEVLKEEAKALA 297

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
            +K   +       +     +   ++    N++SNAI +T  GG+I +     +   +  
Sbjct: 298 QDK-YELSFHCEAGLNS-HGNELQLRSACSNLISNAIRYTEPGGKITVQWRSVATGGL-F 354

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V DTG G+    + +  + F ++ +++  +  G+GLGL + K  +  +  +  I S   
Sbjct: 355 SVTDTGEGIAPQHISRLTERFYRVDSARSRQTGGSGLGLAIVKHALSHHHSELNISSELG 414

Query: 800 KGTLIEIIFP 809
           KG+    + P
Sbjct: 415 KGSTFSFVIP 424


>gi|157737045|ref|YP_001489728.1| two-component sensor histidine kinase [Arcobacter butzleri RM4018]
 gi|157698899|gb|ABV67059.1| two-component sensor histidine kinase [Arcobacter butzleri RM4018]
          Length = 765

 Score =  276 bits (707), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 81/264 (30%), Positives = 139/264 (52%), Gaps = 8/264 (3%)

Query: 547 KLPFSSCYSLTMHDISEWKQE-KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
           ++           + +E     +++L  A + A+  +  KS FLAR+SHE+RTPL AI+G
Sbjct: 281 EMGDMIGAVEIFKENTEKLITSEHQLKIAMEDAKNANQAKSIFLARMSHELRTPLNAILG 340

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
           F+ ++K             E  N I +SG  +L+I+N++L++SKIE+GK+ ++ +     
Sbjct: 341 FANILKKSMNATNQE---KENLNIIKKSGEHLLNIINEILELSKIEAGKIEINPKNFDFC 397

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ 724
           E + E   +  L    K +    +  NN+P+ I AD + ++QI +N+L N++ FT  G Q
Sbjct: 398 ELIKEIEDIFALRCKSKNLKFTINQTNNLPKFIKADEQRLRQILINLLGNSLKFTNEG-Q 456

Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
           I ++  ++ N ++   V+DTG+G+     EK  KPF Q+        +GTGLGL + K +
Sbjct: 457 IFLNI-YSLNNKLFFEVKDTGIGIDLKNQEKIFKPFEQVK-LDNYTQQGTGLGLAITKEL 514

Query: 785 VDANMGKFYIFSTPAKGTLIEIIF 808
           +    G  Y+ S   KG+      
Sbjct: 515 IALMGGTIYVKSQINKGSEFYFSI 538


>gi|154279698|ref|XP_001540662.1| hypothetical protein HCAG_04502 [Ajellomyces capsulatus NAm1]
 gi|150412605|gb|EDN07992.1| hypothetical protein HCAG_04502 [Ajellomyces capsulatus NAm1]
          Length = 1288

 Score =  276 bits (707), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 76/255 (29%), Positives = 130/255 (50%), Gaps = 12/255 (4%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           +S  +    + + A++ AE  +  KS+FLA +SHEIRTP+  IIG +++  +        
Sbjct: 684 VSNLRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDD---LK 740

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
           P   E  N +    N +L I++D+LDISKIE+ +M +   P S+   V  A+  + + AN
Sbjct: 741 PYPREMLNVVHSLANSLLTIIDDILDISKIEANRMVIEKIPFSMRGTVFNALKTLAVKAN 800

Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV-- 737
           EK + +     +++P  +  D   ++QI LN++ NAI FT  G ++ ++ + +  EE   
Sbjct: 801 EKFLSLAYQVDSSVPDFVTGDPFRLRQIILNLVGNAIKFTEHG-EVKLTISKSDREECKD 859

Query: 738 -----ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
                   V DTG+G+   +L+     F Q   S   +  GTGLGL ++K +V+   G  
Sbjct: 860 NEYAFEFSVSDTGIGIEEDKLDLIFDTFQQADGSTTRKFGGTGLGLSISKRLVNLMGGDV 919

Query: 793 YIFSTPAKGTLIEII 807
           ++ S    G+     
Sbjct: 920 WVTSEYGLGSSFHFT 934


>gi|146341588|ref|YP_001206636.1| sensor histidine kinase [Bradyrhizobium sp. ORS278]
 gi|146194394|emb|CAL78419.1| putative sensor histidine kinase with a response regulator receiver
           domain [Bradyrhizobium sp. ORS278]
          Length = 731

 Score =  276 bits (707), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 69/256 (26%), Positives = 124/256 (48%), Gaps = 10/256 (3%)

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + +  L+ ++  AE  +  +S+FLA +SHEIRTP+  +IG      +        P   +
Sbjct: 323 RYQAGLAASRDAAEAGTRARSEFLAMMSHEIRTPMNGVIGL----ADLLLSADLAPEQRK 378

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
            A  +  S + +L ++ND+LD SK+++ ++ +      L  +V+    L+   A EK + 
Sbjct: 379 IATTLRESADYLLQLLNDVLDFSKLDADRLEIEHIEFDLHRSVTATAELLVSRAKEKGLQ 438

Query: 686 IRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS----NEEVILR 740
           + TS A ++P  ++ D   ++Q+  N++ NA+ FT +G  + +          N  ++  
Sbjct: 439 LTTSIAPDVPTYVVGDPARLRQVLFNLVGNALKFTEAGS-VHVDVRAEDLAGPNLTLVFS 497

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V DTGVG+    + +  K F Q+ NS   R  GTGLGL + K +V    G   + S   +
Sbjct: 498 VADTGVGIPAEAVGRLFKQFSQVDNSISRRFGGTGLGLAICKRLVTCMGGDIKVQSKVGE 557

Query: 801 GTLIEIIFPLYDTSHP 816
           G+       +     P
Sbjct: 558 GSTFTFSIQVQPQPQP 573


>gi|48256736|gb|AAT41590.1| GacS [Pseudomonas fluorescens]
          Length = 917

 Score =  276 bits (707), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 79/243 (32%), Positives = 143/243 (58%), Gaps = 8/243 (3%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  A+K A + S  KS+FLA +SHEIRTPL  I+GF+ +++     P    R ++Y   
Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSELTP----RQLDYLGT 325

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I++S + +L I+N++LD SKIE+GK+ L   P +L + + + ++++   A+ K++ + + 
Sbjct: 326 IEKSADSLLGIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSL 385

Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQI---IISTTHTSNEEVILRVRDTG 745
              + P  ++ D   +KQI  N++SNAI FT  G  +   ++   H  + ++ + ++DTG
Sbjct: 386 VYRDTPLSLVGDPLRLKQILTNLVSNAIKFTREGTIVARAMLEDEHEDSVQLRISIQDTG 445

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G++N ++    + F Q  NS   +  GTGLGL ++K +V+   G+  + STP +G+   
Sbjct: 446 IGLSNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLVEQMGGEIGVDSTPGEGSEFW 505

Query: 806 IIF 808
           I  
Sbjct: 506 ISL 508


>gi|6573136|gb|AAF17564.1|AF201841_1 sensor protein EvgS4 [Escherichia coli]
          Length = 1197

 Score =  276 bits (707), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 91/419 (21%), Positives = 164/419 (39%), Gaps = 12/419 (2%)

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
            W+  +                  +    +       ++ +  +E ++    ++ ++  +
Sbjct: 528 TWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISFRKALSDSLPN 587

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--NTPSVMNHYLTEILSLDL 521
              ++N +G ++S N A    F          P         +  S  +    E      
Sbjct: 588 PTYVVNWQGNVISHNSAFEHYFTADYYKNAMLPLENSDSPFKDVFSNAHEVTAETKENRT 647

Query: 522 RQTLEKIT-LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
             T       G  K        +       ++ Y     DI+E +   N L   K  A K
Sbjct: 648 IYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLINALEVGKNKAIK 707

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            +  KS FLA +SHEIRTP+++I+GF E++       L   + +E  +    +G  +L +
Sbjct: 708 ATVAKSQFLATMSHEIRTPISSIMGFLELLS---GSGLSKEQRVEAISLAYATGQSLLGL 764

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILA 699
           + ++LD+ KIESG   L  + V +   V          A  K I +  S        +  
Sbjct: 765 IGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPEHYLVKI 824

Query: 700 DLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMTNYELEKA 756
           D ++ KQ+  N+LSNA+ FT  G  +I  S  H  +   ++   + D+G G++  E ++ 
Sbjct: 825 DPQAFKQVLSNLLSNALKFTTEGAVKITTSLGHIDDNHAVIKMTIMDSGSGLSQEEQQQL 884

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            K + Q   S   +  G+GLGL + K ++    G   + S P  GT   I  P+  +  
Sbjct: 885 FKRYSQT--SAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVEISQQ 941


>gi|307297187|ref|ZP_07577000.1| multi-sensor hybrid histidine kinase [Sphingobium chlorophenolicum
           L-1]
 gi|306877411|gb|EFN08642.1| multi-sensor hybrid histidine kinase [Sphingobium chlorophenolicum
           L-1]
          Length = 914

 Score =  276 bits (707), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 80/310 (25%), Positives = 149/310 (48%), Gaps = 11/310 (3%)

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS-EWKQEKNKLSH 573
            +        +  I L S   ++  + +++ ++       ++ + + + + ++ + +L  
Sbjct: 322 ALAGGLAVTLILFIYLVSLANQRARTEQVVAQRTAELRGVNMRLEERTIQLEESETELRA 381

Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
           AK  AE+ +  KS FLA +SHEIRTP+  +IG +E++ + R     N    EY   I +S
Sbjct: 382 AKNRAEEATRAKSQFLANMSHEIRTPMNGVIGAAELLNDTRL----NASQREYLTMITQS 437

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693
            + +L ++ND+LD SKIE+G++ L     SL + +++ +      A EK I +    A +
Sbjct: 438 ADALLHLINDILDFSKIEAGRLELEHVAFSLRDELADTLQAFAGRATEKGIELACHVALD 497

Query: 694 IPR-ILADLRSVKQIALNILSNAIHFTPSGGQII---ISTTHTSNEEVILRVRDTGVGMT 749
           +P  +  D   ++Q+ +N++ NA+ FT  G  ++   +         +   V DTG G+ 
Sbjct: 498 VPDALEGDPHRLRQVVINLVGNALRFTERGEVVMDVAVERMEDQQAWLRFAVSDTGPGIA 557

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII-- 807
             + +   + F Q   S   R  GTGLGL +A  +V    G+  + S   +G++      
Sbjct: 558 ADKRKLIFEAFSQADTSFTRRFGGTGLGLTIASQLVQLMGGRLELDSCVGRGSVFHFTIA 617

Query: 808 FPLYDTSHPH 817
           F L     PH
Sbjct: 618 FALAQGETPH 627


>gi|222054924|ref|YP_002537286.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           FRC-32]
 gi|221564213|gb|ACM20185.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           FRC-32]
          Length = 575

 Score =  276 bits (707), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 66/396 (16%), Positives = 166/396 (41%), Gaps = 20/396 (5%)

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
              G+    ++       +     +L S++E  ++G+ +I+  G  L  NRA   + GY 
Sbjct: 187 NVIGLVSSALEKNSLYAALGESEYRLKSVVENLTEGLILIDPAGEGLQWNRAALLMHGYS 246

Query: 489 V--EDILRKP----FTVFLEQNTPSVMNHYL--TEILSLDLRQTLEKITLGSTKE-EKLL 539
              +++   P        L+ +   +    L    IL  +  +    +      + ++  
Sbjct: 247 RSVDEVASCPKLDQVFQLLQVDGKPLPMEQLPIKRILRGEEFKDYHLVVRRRNTDWQRTF 306

Query: 540 SLRIIIKKLPFSSCYSLTM--HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
           S   ++ +      +   +  HD++  KQ +++        ++ +     F    SH+++
Sbjct: 307 SFSGVLIRDCRGEPFIGVLTLHDVTSRKQSEDERERLIAELQRSNGELQQFAYVSSHDLQ 366

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
            P+  +  ++++++ +  G L + +   Y +Y+  + + +  +++DLL +S++  G+   
Sbjct: 367 EPIRMVTSYAQLLQKRYQGKL-DDKADSYISYMVEAAHRMSSLIDDLLALSRV--GRSKS 423

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
              PV+L+  V +A+  +++   E    +       +P +  D   + Q+  N++ NA+ 
Sbjct: 424 PPAPVALEPVVQQALDNMRISIGESGAEVTY---GPLPTVPGDEIQLLQLFKNLIGNAVK 480

Query: 718 FTPSGGQIIIST-THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
           +        +         + +  V D G+G+     E+    F ++    +    GTG+
Sbjct: 481 YRKKDVPPRVHISAVRKGNQWVFGVHDNGIGIEPQYHERIFVIFQRLH--YREDYPGTGI 538

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
           GL + + +V+ + G+ ++ ST  +G+      P  D
Sbjct: 539 GLSICQKIVENHGGRIWVESTLGEGSTFYFTLPAKD 574


>gi|75906280|ref|YP_320576.1| PAS/PAC sensor signal transduction histidine kinase [Anabaena
           variabilis ATCC 29413]
 gi|75700005|gb|ABA19681.1| PAS/PAC sensor signal transduction histidine kinase [Anabaena
           variabilis ATCC 29413]
          Length = 591

 Score =  276 bits (706), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 89/597 (14%), Positives = 195/597 (32%), Gaps = 83/597 (13%)

Query: 280 LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG 339
               +  Q    L  + +++ + L             +        +D+  I       G
Sbjct: 8   QELQSCCQQGDRLMVDLQKTQQELKETQGKLSLKKSLKEIADIKFALDQSSIVAVTNHQG 67

Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399
            + Y N  F  +++Y+  + I    G +  +           + + L  S         +
Sbjct: 68  IIEYVNDKFCQISQYQPEELI----GKTHRIINSGYHSPEFFQQMWLTISQGRVWKGEVK 123

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI-- 457
                        +        ++  +      I  +    +  +  ++  + ++  I  
Sbjct: 124 NLA---KDGTYYWVDTTIVPLLDEQGKPQQYVAIRNDITARKQAEITLKQSLKEIADIKF 180

Query: 458 -LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
            L+ +S  +A+ N +GII   N    ++  Y  E+++ K   +             +   
Sbjct: 181 ALDQSSI-VAVTNHQGIIEYVNDKFCQISQYQPEELIGKTHRIINSGYHSPEFFQQMWLT 239

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLS 572
           +S    +  +       K+     +   I  L         Y    +DI+  KQ + +LS
Sbjct: 240 ISQG--RVWKGEVKNLAKDGTHYWVDTTIVPLLDEQGKPQQYVAIRNDITARKQAEAELS 297

Query: 573 HAKKIAE----------------KESSHKSDFLARVSHEIRTPLTAIIG-------FSEV 609
              K  E                ++ S     +A V+HEI  P+  I         +++ 
Sbjct: 298 KQAKELEQALKQLQLTQLQLIQSEKMSSLGQLVAGVAHEINNPVNFISANLKHACQYTQN 357

Query: 610 IKNQ--------RFGPLGNPRYIEYAN-------------YIDRSGNLVLDIVNDLLDIS 648
           +               L      E+ +              +      +  IV  L   S
Sbjct: 358 LLKMIHLYQNYYPEPALEIAEEAEHLDLEFLLADLPKLYSSMTLGAARISKIVTSLRTFS 417

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI---LIRTSFANNIPRILADLRSVK 705
           +++   +        + E +   + +++     ++    ++      N+P +      + 
Sbjct: 418 RLDESDLK----AGDIHEGIDSTLMILEHRLKSQQNRPDILVIREYGNLPLVECYAAQLN 473

Query: 706 QIALNILSNAI-----HFTPSG-----GQIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755
           Q  +NIL NAI      +           I I T  +S +++ +R++D GVGM++   +K
Sbjct: 474 QALMNILINAIDALEEKYEQENYQQVTPTIHICTEISSYKQITIRIKDNGVGMSDEVRQK 533

Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMV-DANMGKFYIFSTPAKGTLIEIIFPLY 811
              PF          G+GTG+GL ++  ++ + + G     S+  KG    I  P++
Sbjct: 534 IFDPFYTSKP----VGKGTGMGLSISYQIITNRHGGSLECISSLGKGAEFIIAIPIH 586



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/202 (9%), Positives = 56/202 (27%), Gaps = 14/202 (6%)

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
           L  S+      +      +   Y        L +   +  +Y++ RN  +     +    
Sbjct: 110 LTISQGRVWKGEVKNLAKDGTYYWVDTTIVPLLDEQGKPQQYVAIRNDITARKQAEITLK 169

Query: 321 LTPE-------TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
            + +        +D+  I       G + Y N  F  +++Y+  + I    G +  +   
Sbjct: 170 QSLKEIADIKFALDQSSIVAVTNHQGIIEYVNDKFCQISQYQPEELI----GKTHRIINS 225

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
                   + + L  S         +             +        ++  +      I
Sbjct: 226 GYHSPEFFQQMWLTISQGRVWKGEVKNLA---KDGTHYWVDTTIVPLLDEQGKPQQYVAI 282

Query: 434 EPEDVDTRINKRKMEIEVMQLC 455
             +    +  + ++  +  +L 
Sbjct: 283 RNDITARKQAEAELSKQAKELE 304



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/246 (8%), Positives = 70/246 (28%), Gaps = 11/246 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH-IDPNNHIGDLLKRQNTWYGKT 147
            +  G ++ ++++  +       ++IG     ++   H  +    +   + +   W G+ 
Sbjct: 63  TNHQGIIEYVNDKFCQISQYQPEELIGKTHRIINSGYHSPEFFQQMWLTISQGRVWKGEV 122

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL--DKKFS 205
                +GT  +V   +  +P+     +   +    I +            K+   +    
Sbjct: 123 KNLAKDGTYYWVDTTI--VPLLDEQGKPQQY--VAIRNDITARKQAEITLKQSLKEIADI 178

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKTEKYP--L 261
                +    +V   +  I         +      ++   T    +             L
Sbjct: 179 KFALDQSSIVAVTNHQGIIEYVNDKFCQISQYQPEELIGKTHRIINSGYHSPEFFQQMWL 238

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
             S+      +      +   Y        L +   +  +Y++ RN  +     +   + 
Sbjct: 239 TISQGRVWKGEVKNLAKDGTHYWVDTTIVPLLDEQGKPQQYVAIRNDITARKQAEAELSK 298

Query: 322 TPETVD 327
             + ++
Sbjct: 299 QAKELE 304


>gi|121585528|ref|ZP_01675324.1| tmao reductase sytem sensor tors [Vibrio cholerae 2740-80]
 gi|121725847|ref|ZP_01679147.1| sensor protein TorS [Vibrio cholerae V52]
 gi|147672464|ref|YP_001215487.1| sensor protein TorS [Vibrio cholerae O395]
 gi|153818582|ref|ZP_01971249.1| sensor protein TorS [Vibrio cholerae NCTC 8457]
 gi|262168553|ref|ZP_06036249.1| sensor protein TorS [Vibrio cholerae RC27]
 gi|121550145|gb|EAX60159.1| tmao reductase sytem sensor tors [Vibrio cholerae 2740-80]
 gi|121631612|gb|EAX63980.1| sensor protein TorS [Vibrio cholerae V52]
 gi|126510865|gb|EAZ73459.1| sensor protein TorS [Vibrio cholerae NCTC 8457]
 gi|146314847|gb|ABQ19387.1| sensor protein TorS [Vibrio cholerae O395]
 gi|262023082|gb|EEY41787.1| sensor protein TorS [Vibrio cholerae RC27]
          Length = 984

 Score =  276 bits (706), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 72/238 (30%), Positives = 118/238 (49%), Gaps = 8/238 (3%)

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
           ++ AE+ S  KS FLA +SHEIRTP+  ++G + ++++             Y   I+RSG
Sbjct: 460 RQQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLQDTTLTST----QQHYVQVINRSG 515

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
             +L I+ND+LD SKIE+G + +H     L   VSE   L+Q  A EK I +      ++
Sbjct: 516 RSLLAILNDVLDYSKIEAGHLEIHHTHFDLYRLVSETHELMQSRAREKGITLTYHIDEDV 575

Query: 695 PRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-VILRVRDTGVGMTNYE 752
            +    D   + Q+  N++ N I FT  G ++ I      + + +   V D+G+G+   E
Sbjct: 576 TQYWQGDEIRIGQVLNNLVGNGIKFTDQG-EVRIRIRLAPDGQGIRFAVEDSGIGIAEEE 634

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
                  F Q    +  +  GTGLGL +++ +V A  G+  + S   +G+      PL
Sbjct: 635 QATLFDAFTQADAGR-RKLGGTGLGLAISRKLVQAMGGELQLASQLGQGSCFWFTLPL 691


>gi|325571334|ref|ZP_08146834.1| sensor histidine kinase [Enterococcus casseliflavus ATCC 12755]
 gi|325155810|gb|EGC68006.1| sensor histidine kinase [Enterococcus casseliflavus ATCC 12755]
          Length = 573

 Score =  276 bits (706), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 75/368 (20%), Positives = 157/368 (42%), Gaps = 29/368 (7%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           R       QL  +L     G+ IIN E  +L  N  + +  G     IL +PFT  +   
Sbjct: 234 RAYAASEQQLYGLLSELMIGVFIINEENQLLLLNPTMQEQLGMETAPILPQPFTEVIHDT 293

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564
               + +        D        T  S +  K+L + +   +    +      +D++  
Sbjct: 294 QLIQLIYQFN-----DETPIFHAETTLSGERSKVLDVTL---RSFQENQLIGISYDLTRI 345

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           +Q +                + DF+  VSHE++TP+T++IGF+E + +            
Sbjct: 346 RQLE--------------KMQKDFVGNVSHELKTPVTSLIGFTETLLDG--AKEDPETLQ 389

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
            +   I +    + +++ D++ +S+ +S       +P++  E + + +      A +K++
Sbjct: 390 TFLEIIQKDAYRLKNLIQDIIQLSQ-DSDSFQYVDQPINFSELLQQVVQTYGPAAVKKQL 448

Query: 685 LIRTSFANNIPRILADLRSVKQ-IALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
             +         IL+  + + Q I  N++ NA+ ++  GG I +S +   +++++ +V+D
Sbjct: 449 TFQFEGPEQ--FILSTKKELLQPIVKNLVENAVTYSKPGGVITLSYS-EQDDQLLFQVQD 505

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
            G+G+   + E+  + F ++  ++     GTGLGL + K       G   + S P  G+ 
Sbjct: 506 QGIGIDEEDQERIFERFYRVDKARARNSGGTGLGLAIVKDYTKLLGGSIKVDSFPKIGST 565

Query: 804 IEIIFPLY 811
             +  PL+
Sbjct: 566 FTVTLPLH 573


>gi|330986722|gb|EGH84825.1| response regulator, sensor histidine kinase component GacS
           [Pseudomonas syringae pv. lachrymans str. M301315]
          Length = 917

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 76/243 (31%), Positives = 140/243 (57%), Gaps = 8/243 (3%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  A+K A + S  KS+FLA +SHEIRTPL  I+GF+ +++     P    R  +Y   
Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSELTP----RQFDYLGT 325

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I++S + +L I+N++LD SKIE+GK+ L   P +L + + + ++++   A+ K++ + + 
Sbjct: 326 IEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSL 385

Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQI---IISTTHTSNEEVILRVRDTG 745
              + P  +  D   ++QI  N++SNAI FT  G  +   ++      + ++ + V+DTG
Sbjct: 386 VYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAMLEDETEEHAQLRISVQDTG 445

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+++ ++    + F Q  NS   +  GTGLGL ++K +++   G+  + STP +G+   
Sbjct: 446 IGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFW 505

Query: 806 IIF 808
           I  
Sbjct: 506 ISL 508


>gi|193069738|ref|ZP_03050689.1| sensor histidine kinase/response regulator EvgS [Escherichia coli
           E110019]
 gi|192956940|gb|EDV87392.1| sensor histidine kinase/response regulator EvgS [Escherichia coli
           E110019]
          Length = 1197

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 88/419 (21%), Positives = 163/419 (38%), Gaps = 12/419 (2%)

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
            W+  +                  +    +       ++ +  +E ++    ++ ++  +
Sbjct: 528 TWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISFRKALSDSLPN 587

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--NTPSVMNHYLTEILSLDL 521
              ++N +G ++S N A    F          P         +  S  +    E      
Sbjct: 588 PTYVVNWQGNVISHNSAFEHYFTADYYKNAMLPLENSDSPFKDVFSNAHEVTAETKENRT 647

Query: 522 RQTLEKIT-LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
             T       G  K        +        + Y     DI+E +   + L   +  A  
Sbjct: 648 IYTQVFEIDNGIEKRCINHWHTLCNLPASDHAVYICGWQDITETRDLIHALEVERNKAIN 707

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            +  KS FLA +SHEIRTP+++I+GF E++       L   + +E  +    +G  +L +
Sbjct: 708 ATVAKSQFLATMSHEIRTPISSIMGFLELLS---GSGLNKEQRVEAISLAYATGQSLLGL 764

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILA 699
           + ++LD+ KIESG   L  + V +   V          A  K I +  S    +   +  
Sbjct: 765 IGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPDHYLVKI 824

Query: 700 DLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMTNYELEKA 756
           D ++ KQ+  N+LSNA+ FT  G  +I  S  H  +   ++   + D+G G++  E ++ 
Sbjct: 825 DPQAFKQVLSNLLSNALKFTTEGAVKITTSLVHIDDNHAVIKMTIMDSGSGLSQEEQQQL 884

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            K + Q   S   +  G+GLGL + K ++    G   + S P  GT   I  P+  +  
Sbjct: 885 FKRYSQT--SAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVEISQQ 941


>gi|152980724|ref|YP_001353975.1| two-component system sensor kinase of the phosphate regulon
           [Janthinobacterium sp. Marseille]
 gi|151280801|gb|ABR89211.1| two-component system sensor kinase of the phosphate regulon
           [Janthinobacterium sp. Marseille]
          Length = 443

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 78/374 (20%), Positives = 150/374 (40%), Gaps = 34/374 (9%)

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
               D   N+ ++   + +    +    DG+ I++    +   N A  K  G        
Sbjct: 84  RLRRDDERNRAELTEWLARFRQAMSLLPDGVVIMDDVLFLEWCNPAAEKHLGLNNGRDKG 143

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554
              T  +          Y+       +    ++    + K+ KL+   + I         
Sbjct: 144 MRVTNLIRNPD---FIDYI-------ILGRYDQPLTLTLKDRKLI---VQIIPFEN-RRQ 189

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
            L  HD +E  + +                + DF+A  SHE+RTPLT I GF E+ + Q 
Sbjct: 190 ILVTHDATESDRIE--------------MMRRDFIANASHELRTPLTVINGFLEIAQGQP 235

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
              L     + + N +   G  + ++V D+L ++++ES    L  E V++   + + +  
Sbjct: 236 --NLDPDVRMSHLNLMIEQGKRMQNLVEDMLTLTRLESIDYPLRPEHVNIGNLLRQILQE 293

Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
            +  +  + ++   S     P I      ++    N++SNA+ +TP GG+I I      N
Sbjct: 294 AEALSGGRHVI---SLTVEGPDIQGSTDELRSAFGNLVSNAVRYTPEGGRIDIKWQDAGN 350

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
                 V+D+G+G+    + +  + F ++  S+    +GTGLGL + K ++  +     I
Sbjct: 351 G-PQFSVKDSGIGIRAEHIVRLTERFYRVDKSRSRETQGTGLGLAIVKHVLLRHGAVLGI 409

Query: 795 FSTPAKGTLIEIIF 808
            S P  G+   + F
Sbjct: 410 ESQPDAGSTFTVKF 423


>gi|110598430|ref|ZP_01386702.1| PAS:Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A-like [Chlorobium
           ferrooxidans DSM 13031]
 gi|110339964|gb|EAT58467.1| PAS:Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A-like [Chlorobium
           ferrooxidans DSM 13031]
          Length = 840

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 84/483 (17%), Positives = 173/483 (35%), Gaps = 33/483 (6%)

Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403
            +     +   +  +D+E +  L      P+   +     V          +   R+   
Sbjct: 230 WSDELWPMYGLE-QNDLEASYELWKECIEPR-ERSAVETAVWHAVQQGEDFSIEWRVRNC 287

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
                    +        +Q  E     GI  +  + +  ++    E +   +++E+   
Sbjct: 288 PDPGR---WLMSKGIPYKDQTGEITRYVGIVVDITELKRARQIGIEERLFTKNVIESIPG 344

Query: 464 GIAIINREGIILSTNRAVS-KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522
              II+  G  +  N  +  ++ G P  ++L  P    L      V+   +  ++   + 
Sbjct: 345 AYYIIDTNGSYIGWNAFLRDEIVGKPESEMLHTPVGSVLHPEDLPVVQQKIINVIEHGIE 404

Query: 523 QTLEKITLGST-KEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE 581
           + +E   L     E +   L      +  ++C   T  DI+E KQ + + +  +    + 
Sbjct: 405 EKVEARVLLRGGPEFRWYLLTGKKIIIDGNTCVIGTGIDITEQKQIEEENAQLEMQLVQS 464

Query: 582 S--SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639
                       ++H+    L  I+G++E++ ++      +  Y++  + I  +     +
Sbjct: 465 QKMEMLGTLAGGIAHDFNNMLGVILGYTEMLLDEFSPA--DAHYLD-IDAIREAAARSAE 521

Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA 699
           +   LL  ++    K  +  E   L+ +V + + +++     + I +    A N  +I  
Sbjct: 522 LTQQLLAFAR----KQTIVPEVFQLNASVEKMLPMLRRLI-GENITLHFVPATNKTQIKI 576

Query: 700 DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS------------NEEVILRVRDTGVG 747
           D   + QI +N+  NA       GQI I                   E + L V D G G
Sbjct: 577 DPSQIDQILVNLCVNARDSITGNGQITIKINRCDIAESSSELSKKVVEYLALSVNDDGCG 636

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           +   ++    +PF         +G+GTGLGL     +V  N G+    S    GT I + 
Sbjct: 637 IAKNDIPHIFEPFFTTK----EQGKGTGLGLSTIYGIVKQNNGRIDCKSESGIGTTITVY 692

Query: 808 FPL 810
            PL
Sbjct: 693 LPL 695



 Score = 51.2 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/145 (11%), Positives = 50/145 (34%), Gaps = 7/145 (4%)

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
            ++ ++E  + +   + +    G   ++RE  I+  N   +K+ G     +  K    F+
Sbjct: 64  QSRIELEKSLNRYADLYDFAPVGYLTLSRESRIVEGNLTAAKILGVSRSLLPDKYLYNFI 123

Query: 502 EQNTPSVMNHYLTEILS-LDLRQTLEKITLGSTKEEKLLS------LRIIIKKLPFSSCY 554
                +    ++ ++ +        E        +   L       +R+           
Sbjct: 124 TAYDRTPFTAFIEQVFTLKGEPSYCEVSLKPKAVQADQLHLATPSSVRMDAVLNDNGENC 183

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAE 579
            L + D++  ++ ++ +S   +  +
Sbjct: 184 RLVLTDVTRQQKAEHVISANHERQQ 208



 Score = 44.2 bits (103), Expect = 0.086,   Method: Composition-based stats.
 Identities = 42/458 (9%), Positives = 109/458 (23%), Gaps = 30/458 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL--KRQNTWYGK 146
           +     + E +    K +G     +    L +        P     + +   +    Y +
Sbjct: 90  LSRESRIVEGNLTAAKILGVSRSLLPDKYLYNFITAYDRTPFTAFIEQVFTLKGEPSYCE 149

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL-DKKFS 205
            +L P       + +   +          +G     ++           +     +++  
Sbjct: 150 VSLKPKAVQADQLHLATPSSVRMDAVLNDNGENCRLVLTDVTRQQKAEHVISANHERQQL 209

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS----SLTEYYAHKDDVLKTEKYPL 261
            L E   G    + +           P   ++         L +      +    E    
Sbjct: 210 ILKETHSGIWEWDIKSNTNVWSDELWPMYGLEQNDLEASYELWKECIEPRERSAVETAVW 269

Query: 262 LTSEE-SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD---- 316
              ++      +                    ++ + E   Y+      +          
Sbjct: 270 HAVQQGEDFSIEWRVRNCPDPGRWLMSKGIPYKDQTGEITRYVGIVVDITELKRARQIGI 329

Query: 317 EGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
           E    T   ++  P  +++    G+    N         K   ++      S L      
Sbjct: 330 EERLFTKNVIESIPGAYYIIDTNGSYIGWNAFLRDEIVGKPESEMLHTPVGSVLHPEDL- 388

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
                 + ++            AR   +            +   K      N    G   
Sbjct: 389 --PVVQQKIINVIEHGIEEKVEAR---VLLRGGPEFRWYLL-TGKKIIIDGNTCVIGTGI 442

Query: 436 EDVDTRINKRKMEIEVMQLC-SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
           +  + +    ++E E  QL   ++++    +      GI    N  +  + GY    +  
Sbjct: 443 DITEQK----QIEEENAQLEMQLVQSQKMEMLGTLAGGIAHDFNNMLGVILGYTEMLL-- 496

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
                F   +   +    + E  +     T + +    
Sbjct: 497 ---DEFSPADAHYLDIDAIREAAARSAELTQQLLAFAR 531


>gi|320333624|ref|YP_004170335.1| multi-sensor signal transduction histidine kinase [Deinococcus
           maricopensis DSM 21211]
 gi|319754913|gb|ADV66670.1| multi-sensor signal transduction histidine kinase [Deinococcus
           maricopensis DSM 21211]
          Length = 984

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 93/645 (14%), Positives = 200/645 (31%), Gaps = 65/645 (10%)

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY 246
              D     L + L  +F          + V++    I     PP  +            
Sbjct: 361 AHDDPRQIELLRWLVARFPSDPAQYGSSAWVQRTGEPILLPAVPPGLVDGIE-------- 412

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
              + D ++      L     +   +          + ++ Y       ++E  +  +  
Sbjct: 413 DPARRDAVRRMGLHSLILVPLTTQGRHLGVLGLATTHPERTYGPDDLALARELAQRAAMA 472

Query: 307 NH-PSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAG 364
               SL       E      +D      +     G+L    P +  LT     +     G
Sbjct: 473 LDNASLFEASQRREARYRSLIDATRQTVWTTDDHGDLRGEQPGWTRLTGQAPHE-HAHGG 531

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
            +  +    +     A +  +  R            H ++                   F
Sbjct: 532 WIDHVHPDDRARTFAAWQDAVQQR------HVYEVDHRLRVADGTYRHFHVRAVPVHTAF 585

Query: 425 PENMPQNGIEPEDVDTRINKRKME------------------IEVMQLCSILEATSDGIA 466
            +     G+  +  D    +  +                       +L +I+      + 
Sbjct: 586 GDPPEWVGVHTDVTDRVRAEAALRDLNADLEARVQARTRDVLRLEERLATIIGHLPISLF 645

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--NTPSVMNHYLTEILSLDLRQT 524
            ++ EG                  D +            +    +   L        R  
Sbjct: 646 ALDDEGRFTL----AEGHGALTGADAVGHSAFERYAPFPDLLGDVRCALAGEAVHAQRTL 701

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
            E++      +   +       ++   S       D+++  + + +L+       + ++ 
Sbjct: 702 GERVL-----DTWYVPQHDETGRV---SGVLGLRVDVTQRARVEAELA-------RSNAE 746

Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
            S F    +H+++ PL  II F+E +  ++     +     Y ++I      +  +V+DL
Sbjct: 747 LSRFAFVAAHDLQEPLRTIISFTE-LLERKHAADLSAGARRYLSFIVGGARRMKTLVDDL 805

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704
           L  S++ +     H  PV L  AV+ A+  +    +     +       +P +L D   +
Sbjct: 806 LAYSRVSAD--PPHLRPVPLSAAVTHALDALDAALHATAARVHVD---ALPDVLGDEGQL 860

Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEE-VILRVRDTGVGMTNYELEKAMKPFGQI 763
            Q+  N++ NA+ F   G    +        E   +RV D G+GM    LE+    F ++
Sbjct: 861 AQVFQNLIGNAVKFRRDGTSPEVRIHADRTGEMWHVRVHDNGIGMDPAYLERIFVMFQRL 920

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
               + + EGTGLGL + + +++A+ G+ +  S P +G+      
Sbjct: 921 HA--KSQYEGTGLGLAICQKIIEAHGGRIWADSAPGQGSTFHFTL 963



 Score = 75.8 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 56/586 (9%), Positives = 130/586 (22%), Gaps = 94/586 (16%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN------- 141
           +D    +  ++       G  A   +G  L D        P  H      R         
Sbjct: 46  LDTQERILCVNPAFAALTGRPAPAHVGEPLRDALPP-GATPYVHAALQAARGEQPPPPPS 104

Query: 142 ----TWYGKTTLWP---IEGTNLYVPIDLAALPIYSRNRE-----FSG--FRGFGIVHVN 187
                +   T   P     G+ L + +D    P     R       +G   R F    + 
Sbjct: 105 PDGLHYRAFTVAGPDGQPAGSALLIDVD----PGQDAARAQHLQRITGALARAFTSSDLI 160

Query: 188 R-VDNDPRALGKRLDKKFSHLHEIK----------------------------KGHSSVE 218
           R V                   E                                H+ + 
Sbjct: 161 RTVLEQAVQATGAFRGTLIKSVEGDTLYLIGSTGYDEGFDDRWRQFNVNPAYPITHAVLT 220

Query: 219 KEKY----DIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQED 274
           +E       +  +  P     +  +  +L        + L          E++ LP ++ 
Sbjct: 221 REAVFGTRALLQRDFPDVMPMLDARTQALVILPLLAGERLLGALTLSFDHEDAVLPARQA 280

Query: 275 FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP-- 332
           F     +          L +  + +    +     S +         T E +        
Sbjct: 281 FARTLADACASALERARLYDAERAAGARAALLAEVSGALAASLEVRPTIERIATLATAHL 340

Query: 333 ------FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
                 F     G +  A  +     + + +  +                     +P++L
Sbjct: 341 ADWAAVFLPDETGRMQAAVVAHDDPRQIELLRWLVARFPSDPAQYGSSAWVQRTGEPILL 400

Query: 387 -YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV---DTRI 442
                                R    ++  +P     +    +      PE     D   
Sbjct: 401 PAVPPGLVDGIEDPARRDAVRRMGLHSLILVPLTTQGRHLGVLGLATTHPERTYGPDDLA 460

Query: 443 NKRKMEIEVM-----------------QLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
             R++                      +  S+++AT   +   +  G +       ++L 
Sbjct: 461 LARELAQRAAMALDNASLFEASQRREARYRSLIDATRQTVWTTDDHGDLRGEQPGWTRLT 520

Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
           G    +     +   +  +  +       + +        E        +       +  
Sbjct: 521 GQAPHEHAHGGWIDHVHPDDRARTFAAWQDAVQQR--HVYEVDHRLRVADGTYRHFHVRA 578

Query: 546 KKLP----FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
             +         +     D+++  + +  L       E     ++ 
Sbjct: 579 VPVHTAFGDPPEWVGVHTDVTDRVRAEAALRDLNADLEARVQARTR 624



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/380 (8%), Positives = 84/380 (22%), Gaps = 14/380 (3%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            W  D HG L+       +  G    +       D                  +Q   Y 
Sbjct: 500 VWTTDDHGDLRGEQPGWTRLTGQAPHEHAHGGWIDHVHPDDRARTFAAWQDAVQQRHVYE 559

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
                 +          + A+P+++   +       G+           A  + L+    
Sbjct: 560 VDHRLRVADGTYRHFH-VRAVPVHTAFGDPP--EWVGVHTDVTDRVRAEAALRDLNADLE 616

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK----------VSSLTEYYAHKDDVLK 255
              + +       +E+        P     + ++            +  +   H      
Sbjct: 617 ARVQARTRDVLRLEERLATIIGHLPISLFALDDEGRFTLAEGHGALTGADAVGHSAFERY 676

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
                LL     +L  +       L +     ++    + +      L  R   +  A  
Sbjct: 677 APFPDLLGDVRCALAGEAVHAQRTLGERVLDTWYVPQHDETGRVSGVLGLRVDVTQRARV 736

Query: 316 DEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
           +     +   + +       +          SF  L + K   D+               
Sbjct: 737 EAELARSNAELSRFAF-VAAHDLQEPLRTIISFTELLERKHAADLSAGARRYLSFIVGGA 795

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
                +   +L  S  +      R   +     ++L                     +  
Sbjct: 796 RRMKTLVDDLLAYSRVSADPPHLRPVPLSAAVTHALDALDAALHATAARVHVDALPDVLG 855

Query: 436 EDVDTRINKRKMEIEVMQLC 455
           ++       + +    ++  
Sbjct: 856 DEGQLAQVFQNLIGNAVKFR 875



 Score = 45.8 bits (107), Expect = 0.030,   Method: Composition-based stats.
 Identities = 17/108 (15%), Positives = 34/108 (31%), Gaps = 8/108 (7%)

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
           L  +L  T    A+++ +  IL  N A + L G P    + +P    L       ++  L
Sbjct: 32  LDHVLAHTPSACALLDTQERILCVNPAFAALTGRPAPAHVGEPLRDALPPGATPYVHAAL 91

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDI 561
                       E+     + +        +       +  S  + D+
Sbjct: 92  QAARG-------EQPPPPPSPDGLHYRAFTVAGPDGQPAG-SALLIDV 131


>gi|21229958|ref|NP_635875.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66766834|ref|YP_241596.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188989907|ref|YP_001901917.1| two-component system sensory histidine kinase [Xanthomonas
           campestris pv. campestris str. B100]
 gi|21111470|gb|AAM39799.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66572166|gb|AAY47576.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|167731667|emb|CAP49845.1| two-component system sensory histidine kinase [Xanthomonas
           campestris pv. campestris]
          Length = 767

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 73/250 (29%), Positives = 117/250 (46%), Gaps = 10/250 (4%)

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + + +L  AK+ AE  S  K +FLA +SHEIRTPL  II   E+I   +          +
Sbjct: 92  ELEQELLRAKQAAEAASLAKGEFLATMSHEIRTPLNGIIPMLELISRGQLSL----DQRD 147

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
                  S   +L IV+D+LD SK+E+ K+ L     +L E +     L+Q  A  K++ 
Sbjct: 148 MLQTATGSSLQLLRIVDDILDYSKLEANKLELEITTFNLRELLDGVAQLMQRTAEGKQLR 207

Query: 686 IRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH----TSNEEVILR 740
           +      ++   +  D   ++Q+  N++ NAI FT  G  + I         +   +  +
Sbjct: 208 LGLDIEPSVRLLVRGDPIRLRQVLGNLIGNAIKFTERGS-VDIQLRRLGETRAQHLLRFQ 266

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           VRDTG+G+   +  +  + F Q   S      GTGLGL + K ++D   G+  + S P +
Sbjct: 267 VRDTGIGIAADQQARLFRSFAQADASTTRLYGGTGLGLAICKRIIDLMGGRIGVESEPGR 326

Query: 801 GTLIEIIFPL 810
           G       PL
Sbjct: 327 GATFWFEIPL 336


>gi|294667725|ref|ZP_06732937.1| two-component system sensor protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292602565|gb|EFF46004.1| two-component system sensor protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 769

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 72/250 (28%), Positives = 120/250 (48%), Gaps = 10/250 (4%)

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + + +L  AK+ AE  +  K +FLA +SHEIRTPL  II   E+I + +          +
Sbjct: 92  ELEQELLRAKQAAEAATLAKGEFLATMSHEIRTPLNGIIPMLELISSGQLSL----DQRD 147

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
                  S   +L IV+D+LD SK+E+ K+ L     +L E +   I L+Q  A  +++ 
Sbjct: 148 MLQTATGSSLQLLRIVDDILDYSKLEANKLELEITTFNLRELLDGVIQLLQRTAEGRQLR 207

Query: 686 IRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH----TSNEEVILR 740
           +      ++   +  D   ++Q+  N++ NAI FT  G  + I         +   +  +
Sbjct: 208 LSLDIEPSVRLLVRGDPIRLRQVLGNLIGNAIKFTERGS-VDIQLRRLGETRAQHLLRFQ 266

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           VRDTG+G+   +  +  + F Q   S      GTGLGL + K ++D   G+  + S P +
Sbjct: 267 VRDTGIGIAPDQQARLFRSFAQADASTTRLYGGTGLGLAICKRIIDLMGGRIGVESEPGR 326

Query: 801 GTLIEIIFPL 810
           G+      PL
Sbjct: 327 GSTFWFEIPL 336


>gi|294627247|ref|ZP_06705834.1| two-component system sensor protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292598486|gb|EFF42636.1| two-component system sensor protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 769

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 72/250 (28%), Positives = 120/250 (48%), Gaps = 10/250 (4%)

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + + +L  AK+ AE  +  K +FLA +SHEIRTPL  II   E+I + +          +
Sbjct: 92  ELEQELLRAKQAAEAATLAKGEFLATMSHEIRTPLNGIIPMLELISSGQLSL----DQRD 147

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
                  S   +L IV+D+LD SK+E+ K+ L     +L E +   I L+Q  A  +++ 
Sbjct: 148 MLQTATGSSLQLLRIVDDILDYSKLEANKLELEITTFNLRELLDGVIQLLQRTAEGRQLR 207

Query: 686 IRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH----TSNEEVILR 740
           +      ++   +  D   ++Q+  N++ NAI FT  G  + I         +   +  +
Sbjct: 208 LSLDIEPSVRLLVRGDPIRLRQVLGNLIGNAIKFTERGS-VDIQLRRLGETRAQHLLRFQ 266

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           VRDTG+G+   +  +  + F Q   S      GTGLGL + K ++D   G+  + S P +
Sbjct: 267 VRDTGIGIAPDQQARLFRSFAQADASTTRLYGGTGLGLAICKRIIDLMGGRIGVESEPGR 326

Query: 801 GTLIEIIFPL 810
           G+      PL
Sbjct: 327 GSTFWFEIPL 336


>gi|289648121|ref|ZP_06479464.1| response regulator, sensor histidine kinase component GacS
           [Pseudomonas syringae pv. aesculi str. 2250]
 gi|330866044|gb|EGH00753.1| response regulator, sensor histidine kinase component GacS
           [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 917

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 76/243 (31%), Positives = 140/243 (57%), Gaps = 8/243 (3%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  A+K A + S  KS+FLA +SHEIRTPL  I+GF+ +++     P    R  +Y   
Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSELTP----RQFDYLGT 325

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I++S + +L I+N++LD SKIE+GK+ L   P +L + + + ++++   A+ K++ + + 
Sbjct: 326 IEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSL 385

Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQI---IISTTHTSNEEVILRVRDTG 745
              + P  +  D   ++QI  N++SNAI FT  G  +   ++      + ++ + V+DTG
Sbjct: 386 VYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAMLEDETEEHAQLRISVQDTG 445

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+++ ++    + F Q  NS   +  GTGLGL ++K +++   G+  + STP +G+   
Sbjct: 446 IGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFW 505

Query: 806 IIF 808
           I  
Sbjct: 506 ISL 508


>gi|261758225|ref|ZP_06001934.1| sensory box histidine kinase/response regulator [Brucella sp.
           F5/99]
 gi|261738209|gb|EEY26205.1| sensory box histidine kinase/response regulator [Brucella sp.
           F5/99]
          Length = 891

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 99/626 (15%), Positives = 208/626 (33%), Gaps = 51/626 (8%)

Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271
           +G      + Y   +  +    +R  ++V +     +     L       L+++E     
Sbjct: 138 RGQIVYANQAYARMTGATDADGIRPLDQVLASEPAASDAIYRLTNAVRDGLSAQEEVRIS 197

Query: 272 QEDFHTINLNQY--TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE-----NLTPE 324
                  N +      +     L+  ++     ++ +         ++            
Sbjct: 198 GGLSRGANGSLAPVWYRIKARALEGGAEFKGPLVAWQVADISEERAEQERFFQELQEAIN 257

Query: 325 TVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
            +D  P  FF     G + Y N +               +  L+ ++    ++       
Sbjct: 258 HLDHAPAGFFSANPAGRIIYLNATLAEWLGVDLTQFTPGSLTLNDIVAGSGMA------L 311

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
           +   +++      +     +      SLA+ F    +  +         I  +  +   +
Sbjct: 312 IKAVKAEPGTSRNTVIDLDLIKRNGQSLAVRFYHRVQTARDGMPGTTRTIVLDRAEGDDS 371

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG--YPVEDILRKPFTVFL 501
                   ++      +    IA ++ EG  L TN     +F      + I R+     +
Sbjct: 372 SVAQRSAEVRFTRFFNSAPMAIAAVDAEGHTLRTNARFLDIFSGVVDRDAIDRRVKLENV 431

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF----SSCYSLT 557
                    +                 T+    EE+ +   +                ++
Sbjct: 432 VHERDRETFNKALAAAFAGQASISPVDTVLPGNEERHIRFYMSPVTDLGGEAAEEAAVIS 491

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
             + +E K  +N+++ ++K+              ++H+    LTAII  S+++       
Sbjct: 492 AVETTEQKALENQMAQSQKM-----QAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNH--R 544

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
             +P + +  N I ++ N    +V  LL  S+    +  L  E + L + +++ + ++  
Sbjct: 545 ASDPSFPDIMN-IKQNANRAASLVRQLLAFSR----RQTLRPEVLDLTDVLAD-LRMLLA 598

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT------- 730
               K I ++     ++  + ADL   +Q+A+N+  NA    P GGQI + T        
Sbjct: 599 RLVGKDIELKIDHGRDLWPVKADLGQFEQVAVNLAVNARDAMPEGGQITLRTRNIPAADA 658

Query: 731 -------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
                      + V+  V DTG G+    LEK  +PF          G+GTGLGL +   
Sbjct: 659 AKLHYRDLPEADYVVFEVEDTGTGIPADVLEKIFEPFFTTK----EVGKGTGLGLSMVYG 714

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFP 809
           ++    G  Y  S   KGT  +I  P
Sbjct: 715 IIKQTGGFIYCDSEVGKGTTFKIFLP 740



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/238 (11%), Positives = 66/238 (27%), Gaps = 7/238 (2%)

Query: 319 ENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
           ++L    +D  P    +    G + YAN ++  +T     D I     +  L   P  SD
Sbjct: 118 QDLAHSFMDTQPEGTVISDPRGQIVYANQAYARMTGATDADGIRPLDQV--LASEPAASD 175

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
                   +                 +    +   + +    +A +         +  + 
Sbjct: 176 AIYRLTNAVRDGLSAQEEVRISGGLSRGANGSLAPVWYRIKARALEGGAEFKGPLVAWQV 235

Query: 438 VDTRINKRKMEIEVMQLC-SI--LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
            D    + + E    +L  +I  L+    G    N  G I+  N  +++  G  +     
Sbjct: 236 ADISEERAEQERFFQELQEAINHLDHAPAGFFSANPAGRIIYLNATLAEWLGVDLTQFTP 295

Query: 495 KPFT-VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
              T   +   +   +   +           ++   +    +   +     ++     
Sbjct: 296 GSLTLNDIVAGSGMALIKAVKAEPGTSRNTVIDLDLIKRNGQSLAVRFYHRVQTARDG 353



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 47/420 (11%), Positives = 103/420 (24%), Gaps = 38/420 (9%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD--ILHIDPNNHIGDLLKRQNTWYGKT 147
           D  G +   ++   +  G      I   L  V        D    + + ++   +   + 
Sbjct: 136 DPRGQIVYANQAYARMTGATDADGI-RPLDQVLASEPAASDAIYRLTNAVRDGLSAQEEV 194

Query: 148 TL-----WPIEGTNLYVPIDLAALPIYSRNREFSG-FRGFGIVHVNRVDNDPRALGKRLD 201
            +         G+   V   + A  +     EF G    + +  ++    +     + L 
Sbjct: 195 RISGGLSRGANGSLAPVWYRIKARALEGGA-EFKGPLVAWQVADISEERAEQERFFQELQ 253

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR------MKNKVSSLTEYYAHKDDVLK 255
           +  +HL     G  S       I+   +    L           ++           ++K
Sbjct: 254 EAINHLDHAPAGFFSANPAGRIIYLNATLAEWLGVDLTQFTPGSLTLNDIVAGSGMALIK 313

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN--NSKESFEYLSHRNHPSLSA 313
             K    TS  + +                     T ++          L        S 
Sbjct: 314 AVKAEPGTSRNTVIDLDLIKRNGQSLAVRFYHRVQTARDGMPGTTRTIVLDRAEGDDSSV 373

Query: 314 YFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLT-KYKSVDDIEIAGGLSTLLD 371
                E       +  P+    V + G+    N  FL +       D I+    L  +  
Sbjct: 374 AQRSAEVRFTRFFNSAPMAIAAVDAEGHTLRTNARFLDIFSGVVDRDAIDRRVKLENV-V 432

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
             +  +         +    +       L     N E  +     P              
Sbjct: 433 HERDRETFNKALAAAFAGQASISPVDTVL---PGNEERHIRFYMSPVTDLGGEAAEEAAV 489

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSI----------LEATSDGIAIINREGIILSTNRAV 481
               E  + +  + +M  +  ++ ++                 I + +    +L TN   
Sbjct: 490 ISAVETTEQKALENQM-AQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSD---LLLTNHRA 545



 Score = 48.5 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 45/134 (33%), Gaps = 12/134 (8%)

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY-LT 514
           S ++   +G  I +  G I+  N+A +++ G    D   +P    L     +    Y LT
Sbjct: 123 SFMDTQPEGTVISDPRGQIVYANQAYARMTGATDAD-GIRPLDQVLASEPAASDAIYRLT 181

Query: 515 EILSLDLRQTLEKITLG---STKEEKLLSLRIIIKKLPFSSC-------YSLTMHDISEW 564
             +   L    E    G         L  +   IK               +  + DISE 
Sbjct: 182 NAVRDGLSAQEEVRISGGLSRGANGSLAPVWYRIKARALEGGAEFKGPLVAWQVADISEE 241

Query: 565 KQEKNKLSHAKKIA 578
           + E+ +     + A
Sbjct: 242 RAEQERFFQELQEA 255


>gi|260757997|ref|ZP_05870345.1| multi-sensor hybrid histidine kinase [Brucella abortus bv. 4 str.
           292]
 gi|261222207|ref|ZP_05936488.1| multi-sensor hybrid histidine kinase [Brucella ceti B1/94]
 gi|261321880|ref|ZP_05961077.1| multi-sensor hybrid histidine kinase [Brucella ceti M644/93/1]
 gi|261755000|ref|ZP_05998709.1| multi-sensor hybrid histidine kinase [Brucella suis bv. 3 str. 686]
 gi|265991120|ref|ZP_06103677.1| multi-sensor hybrid histidine kinase [Brucella melitensis bv. 1
           str. Rev.1]
 gi|260668315|gb|EEX55255.1| multi-sensor hybrid histidine kinase [Brucella abortus bv. 4 str.
           292]
 gi|260920791|gb|EEX87444.1| multi-sensor hybrid histidine kinase [Brucella ceti B1/94]
 gi|261294570|gb|EEX98066.1| multi-sensor hybrid histidine kinase [Brucella ceti M644/93/1]
 gi|261744753|gb|EEY32679.1| multi-sensor hybrid histidine kinase [Brucella suis bv. 3 str. 686]
 gi|263001904|gb|EEZ14479.1| multi-sensor hybrid histidine kinase [Brucella melitensis bv. 1
           str. Rev.1]
          Length = 891

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 99/626 (15%), Positives = 208/626 (33%), Gaps = 51/626 (8%)

Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271
           +G      + Y   +  +    +R  ++V +     +     L       L+++E     
Sbjct: 138 RGQIVYANQAYARMTGATDADGIRPLDQVLASEPAASDAIYRLTNAVRDGLSAQEEVRIS 197

Query: 272 QEDFHTINLNQY--TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE-----NLTPE 324
                  N +      +     L+  ++     ++ +         ++            
Sbjct: 198 GGLSRGANGSLAPVWYRIKARALEGGAEFKGPLVAWQVADISEERAEQERFFQELQEAIN 257

Query: 325 TVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
            +D  P  FF     G + Y N +               +  L+ ++    ++       
Sbjct: 258 HLDHAPAGFFSANPAGRIIYLNATLAEWLGVDLTQFTPGSLTLNDIVAGSGMA------L 311

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
           +   +++      +     +      SLA+ F    +  +         I  +  +   +
Sbjct: 312 IKAVKAEPGTSRNTVIDLDLIKRNGQSLAVRFYHRVQTARDGMPGTTRTIVLDRAEGDDS 371

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG--YPVEDILRKPFTVFL 501
                   ++      +    IA ++ EG  L TN     +F      + I R+     +
Sbjct: 372 SVAQRSAEVRFTRFFNSAPMAIAAVDAEGHTLRTNARFLDIFSGVVDRDAIDRRVKLENV 431

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF----SSCYSLT 557
                    +                 T+    EE+ +   +                ++
Sbjct: 432 VHERDRETFNKALAAAFAGQASISPVDTVLPGNEERHIRFYMSPVTDLGGEAAEEAAVIS 491

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
             + +E K  +N+++ ++K+              ++H+    LTAII  S+++       
Sbjct: 492 AVETTEQKALENQMAQSQKM-----QAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNH--R 544

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
             +P + +  N I ++ N    +V  LL  S+    +  L  E + L + +++ + ++  
Sbjct: 545 ASDPSFPDIMN-IKQNANRAASLVRQLLAFSR----RQTLRPEVLDLTDVLAD-LRMLLA 598

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT------- 730
               K I ++     ++  + ADL   +Q+A+N+  NA    P GGQI + T        
Sbjct: 599 RLVGKDIELKIDHGRDLWPVKADLGQFEQVAVNLAVNARDAMPEGGQITLRTRNIPAADA 658

Query: 731 -------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
                      + V+  V DTG G+    LEK  +PF          G+GTGLGL +   
Sbjct: 659 AKLHYRDLPEADYVVFEVEDTGTGIPADVLEKIFEPFFTTK----EVGKGTGLGLSMVYG 714

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFP 809
           ++    G  Y  S   KGT  +I  P
Sbjct: 715 IIKQTGGFIYCDSEVGKGTTFKIFLP 740



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/238 (11%), Positives = 66/238 (27%), Gaps = 7/238 (2%)

Query: 319 ENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
           ++L    +D  P    +    G + YAN ++  +T     D I     +  L   P  SD
Sbjct: 118 QDLAHSFMDTQPEGTVISDPRGQIVYANQAYARMTGATDADGIRPLDQV--LASEPAASD 175

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
                   +                 +    +   + +    +A +         +  + 
Sbjct: 176 AIYRLTNAVRDGLSAQEEVRISGGLSRGANGSLAPVWYRIKARALEGGAEFKGPLVAWQV 235

Query: 438 VDTRINKRKMEIEVMQLC-SI--LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
            D    + + E    +L  +I  L+    G    N  G I+  N  +++  G  +     
Sbjct: 236 ADISEERAEQERFFQELQEAINHLDHAPAGFFSANPAGRIIYLNATLAEWLGVDLTQFTP 295

Query: 495 KPFT-VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
              T   +   +   +   +           ++   +    +   +     ++     
Sbjct: 296 GSLTLNDIVAGSGMALIKAVKAEPGTSRNTVIDLDLIKRNGQSLAVRFYHRVQTARDG 353



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 47/420 (11%), Positives = 103/420 (24%), Gaps = 38/420 (9%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD--ILHIDPNNHIGDLLKRQNTWYGKT 147
           D  G +   ++   +  G      I   L  V        D    + + ++   +   + 
Sbjct: 136 DPRGQIVYANQAYARMTGATDADGI-RPLDQVLASEPAASDAIYRLTNAVRDGLSAQEEV 194

Query: 148 TL-----WPIEGTNLYVPIDLAALPIYSRNREFSG-FRGFGIVHVNRVDNDPRALGKRLD 201
            +         G+   V   + A  +     EF G    + +  ++    +     + L 
Sbjct: 195 RISGGLSRGANGSLAPVWYRIKARALEGGA-EFKGPLVAWQVADISEERAEQERFFQELQ 253

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR------MKNKVSSLTEYYAHKDDVLK 255
           +  +HL     G  S       I+   +    L           ++           ++K
Sbjct: 254 EAINHLDHAPAGFFSANPAGRIIYLNATLAEWLGVDLTQFTPGSLTLNDIVAGSGMALIK 313

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN--NSKESFEYLSHRNHPSLSA 313
             K    TS  + +                     T ++          L        S 
Sbjct: 314 AVKAEPGTSRNTVIDLDLIKRNGQSLAVRFYHRVQTARDGMPGTTRTIVLDRAEGDDSSV 373

Query: 314 YFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLT-KYKSVDDIEIAGGLSTLLD 371
                E       +  P+    V + G+    N  FL +       D I+    L  +  
Sbjct: 374 AQRSAEVRFTRFFNSAPMAIAAVDAEGHTLRTNARFLDIFSGVVDRDAIDRRVKLENV-V 432

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
             +  +         +    +       L     N E  +     P              
Sbjct: 433 HERDRETFNKALAAAFAGQASISPVDTVL---PGNEERHIRFYMSPVTDLGGEAAEEAAV 489

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSI----------LEATSDGIAIINREGIILSTNRAV 481
               E  + +  + +M  +  ++ ++                 I + +    +L TN   
Sbjct: 490 ISAVETTEQKALENQM-AQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSD---LLLTNHRA 545



 Score = 48.5 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 45/134 (33%), Gaps = 12/134 (8%)

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY-LT 514
           S ++   +G  I +  G I+  N+A +++ G    D   +P    L     +    Y LT
Sbjct: 123 SFMDTQPEGTVISDPRGQIVYANQAYARMTGATDAD-GIRPLDQVLASEPAASDAIYRLT 181

Query: 515 EILSLDLRQTLEKITLG---STKEEKLLSLRIIIKKLPFSSC-------YSLTMHDISEW 564
             +   L    E    G         L  +   IK               +  + DISE 
Sbjct: 182 NAVRDGLSAQEEVRISGGLSRGANGSLAPVWYRIKARALEGGAEFKGPLVAWQVADISEE 241

Query: 565 KQEKNKLSHAKKIA 578
           + E+ +     + A
Sbjct: 242 RAEQERFFQELQEA 255


>gi|225627514|ref|ZP_03785551.1| PAS domain S-box-containing protein [Brucella ceti str. Cudo]
 gi|225617519|gb|EEH14564.1| PAS domain S-box-containing protein [Brucella ceti str. Cudo]
          Length = 945

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 99/626 (15%), Positives = 208/626 (33%), Gaps = 51/626 (8%)

Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271
           +G      + Y   +  +    +R  ++V +     +     L       L+++E     
Sbjct: 192 RGQIVYANQAYARMTGATDADGIRPLDQVLASEPAASDAIYRLTNAVRDGLSAQEEVRIS 251

Query: 272 QEDFHTINLNQY--TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE-----NLTPE 324
                  N +      +     L+  ++     ++ +         ++            
Sbjct: 252 GGLSRGANGSLAPVWYRIKARALEGGAEFKGPLVAWQVADISEERAEQERFFQELQEAIN 311

Query: 325 TVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
            +D  P  FF     G + Y N +               +  L+ ++    ++       
Sbjct: 312 HLDHAPAGFFSANPAGRIIYLNATLAEWLGVDLTQFTPGSLTLNDIVAGSGMA------L 365

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
           +   +++      +     +      SLA+ F    +  +         I  +  +   +
Sbjct: 366 IKAVKAEPGTSRNTVIDLDLIKRNGQSLAVRFYHRVQTARDGMPGTTRTIVLDRAEGDDS 425

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG--YPVEDILRKPFTVFL 501
                   ++      +    IA ++ EG  L TN     +F      + I R+     +
Sbjct: 426 SVAQRSAEVRFTRFFNSAPMAIAAVDAEGHTLRTNARFLDIFSGVVDRDAIDRRVKLENV 485

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF----SSCYSLT 557
                    +                 T+    EE+ +   +                ++
Sbjct: 486 VHERDRETFNKALAAAFAGQASISPVDTVLPGNEERHIRFYMSPVTDLGGEAAEEAAVIS 545

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
             + +E K  +N+++ ++K+              ++H+    LTAII  S+++       
Sbjct: 546 AVETTEQKALENQMAQSQKM-----QAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNH--R 598

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
             +P + +  N I ++ N    +V  LL  S+    +  L  E + L + +++ + ++  
Sbjct: 599 ASDPSFPDIMN-IKQNANRAASLVRQLLAFSR----RQTLRPEVLDLTDVLAD-LRMLLA 652

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT------- 730
               K I ++     ++  + ADL   +Q+A+N+  NA    P GGQI + T        
Sbjct: 653 RLVGKDIELKIDHGRDLWPVKADLGQFEQVAVNLAVNARDAMPEGGQITLRTRNIPAADA 712

Query: 731 -------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
                      + V+  V DTG G+    LEK  +PF          G+GTGLGL +   
Sbjct: 713 AKLHYRDLPEADYVVFEVEDTGTGIPADVLEKIFEPFFTTK----EVGKGTGLGLSMVYG 768

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFP 809
           ++    G  Y  S   KGT  +I  P
Sbjct: 769 IIKQTGGFIYCDSEVGKGTTFKIFLP 794



 Score = 73.1 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/394 (11%), Positives = 106/394 (26%), Gaps = 20/394 (5%)

Query: 164 AALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH-LHEIKKGHSSVEKEKY 222
           +A  IY   R     R  GI++ +R++    A+G   +++ +  L +  +     E+   
Sbjct: 28  SANRIYLDARASVPARRAGILNEDRIELPDDAIGASAERRSTRDLRKPSRAGIQHERAVG 87

Query: 223 DIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQ 282
            +  Q               L          L+     +L    + +         +   
Sbjct: 88  LMSRQTDNT-------YPKPLVMPKRGPSAALRLLIVGILLMGAAFIYFLFRDQLGDGFA 140

Query: 283 YTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNL 341
                    +       F            +   + ++L    +D  P    +    G +
Sbjct: 141 LVLMGVLSMVG-----VFYLFGAATGLIQFSQRSDHQDLAHSFMDTQPEGTVISDPRGQI 195

Query: 342 FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401
            YAN ++  +T     D I     +  L   P  SD        +               
Sbjct: 196 VYANQAYARMTGATDADGIRPLDQV--LASEPAASDAIYRLTNAVRDGLSAQEEVRISGG 253

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC-SI--L 458
             +    +   + +    +A +         +  +  D    + + E    +L  +I  L
Sbjct: 254 LSRGANGSLAPVWYRIKARALEGGAEFKGPLVAWQVADISEERAEQERFFQELQEAINHL 313

Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT-VFLEQNTPSVMNHYLTEIL 517
           +    G    N  G I+  N  +++  G  +        T   +   +   +   +    
Sbjct: 314 DHAPAGFFSANPAGRIIYLNATLAEWLGVDLTQFTPGSLTLNDIVAGSGMALIKAVKAEP 373

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
                  ++   +    +   +     ++     
Sbjct: 374 GTSRNTVIDLDLIKRNGQSLAVRFYHRVQTARDG 407



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 47/420 (11%), Positives = 103/420 (24%), Gaps = 38/420 (9%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD--ILHIDPNNHIGDLLKRQNTWYGKT 147
           D  G +   ++   +  G      I   L  V        D    + + ++   +   + 
Sbjct: 190 DPRGQIVYANQAYARMTGATDADGI-RPLDQVLASEPAASDAIYRLTNAVRDGLSAQEEV 248

Query: 148 TL-----WPIEGTNLYVPIDLAALPIYSRNREFSG-FRGFGIVHVNRVDNDPRALGKRLD 201
            +         G+   V   + A  +     EF G    + +  ++    +     + L 
Sbjct: 249 RISGGLSRGANGSLAPVWYRIKARALEGGA-EFKGPLVAWQVADISEERAEQERFFQELQ 307

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR------MKNKVSSLTEYYAHKDDVLK 255
           +  +HL     G  S       I+   +    L           ++           ++K
Sbjct: 308 EAINHLDHAPAGFFSANPAGRIIYLNATLAEWLGVDLTQFTPGSLTLNDIVAGSGMALIK 367

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN--NSKESFEYLSHRNHPSLSA 313
             K    TS  + +                     T ++          L        S 
Sbjct: 368 AVKAEPGTSRNTVIDLDLIKRNGQSLAVRFYHRVQTARDGMPGTTRTIVLDRAEGDDSSV 427

Query: 314 YFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLT-KYKSVDDIEIAGGLSTLLD 371
                E       +  P+    V + G+    N  FL +       D I+    L  +  
Sbjct: 428 AQRSAEVRFTRFFNSAPMAIAAVDAEGHTLRTNARFLDIFSGVVDRDAIDRRVKLENV-V 486

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
             +  +         +    +       L     N E  +     P              
Sbjct: 487 HERDRETFNKALAAAFAGQASISPVDTVL---PGNEERHIRFYMSPVTDLGGEAAEEAAV 543

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSI----------LEATSDGIAIINREGIILSTNRAV 481
               E  + +  + +M  +  ++ ++                 I + +    +L TN   
Sbjct: 544 ISAVETTEQKALENQM-AQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSD---LLLTNHRA 599



 Score = 48.5 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 45/134 (33%), Gaps = 12/134 (8%)

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY-LT 514
           S ++   +G  I +  G I+  N+A +++ G    D   +P    L     +    Y LT
Sbjct: 177 SFMDTQPEGTVISDPRGQIVYANQAYARMTGATDAD-GIRPLDQVLASEPAASDAIYRLT 235

Query: 515 EILSLDLRQTLEKITLG---STKEEKLLSLRIIIKKLPFSSC-------YSLTMHDISEW 564
             +   L    E    G         L  +   IK               +  + DISE 
Sbjct: 236 NAVRDGLSAQEEVRISGGLSRGANGSLAPVWYRIKARALEGGAEFKGPLVAWQVADISEE 295

Query: 565 KQEKNKLSHAKKIA 578
           + E+ +     + A
Sbjct: 296 RAEQERFFQELQEA 309


>gi|116750233|ref|YP_846920.1| PAS/PAC sensor signal transduction histidine kinase
           [Syntrophobacter fumaroxidans MPOB]
 gi|116699297|gb|ABK18485.1| PAS/PAC sensor signal transduction histidine kinase
           [Syntrophobacter fumaroxidans MPOB]
          Length = 505

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 82/501 (16%), Positives = 166/501 (33%), Gaps = 30/501 (5%)

Query: 325 TVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDIEIA--GGLSTLLDAPKLSDNNAI 381
             D   +P  +     +   AN  FL   +      +          L +          
Sbjct: 13  VFDSLSVPTLILKPNKIIVDANARFLERFRVSKAQVVGKTCHDFFYHLREPCPHETCALA 72

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
           + +   +        +      +W+               ++  E         +    +
Sbjct: 73  RTLEDRQGHSAVKIVATGEGEEKWDNRVF-------SPIVDETGEVRYVVECIHDMTPVK 125

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK-PFTVF 500
             +R++         I+ +++  +   +R+G IL  N A  +L GY +++   K      
Sbjct: 126 TLERELSDAREFTQKIILSSTCAMIAADRKGRILMMNPAAEELTGYSLKEARGKVTAEDL 185

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLT 557
                   +   L +       +             + + + +    +            
Sbjct: 186 YPPGEAKKVMKILRDERIGGKGKLNCTRISMVNARGEDVPVELSAAIIYEGDKEVGTMSV 245

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSH--KSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
            +D+ E  Q + ++        +           A V+HEI  PLT II FS+++ +   
Sbjct: 246 FNDLREKLQHEKQMEQMLLRIARAEKMASLGQLAAGVAHEINNPLTGIIFFSKLVLDTL- 304

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
               +    E    I         IV +LL  S+    + N   E + +   +  +++L+
Sbjct: 305 --EKDDPRRENLAAIFEDAKRCGKIVTNLLAYSR----QANPGTEVLHIHTLLEHSLNLI 358

Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
           +       I +    +  +  I  D   + Q+ +N++ NA+      G + + T    + 
Sbjct: 359 RDRKAFMHIRVVKELSREMMLIRGDRDQLSQVIVNLVMNALDAMDRRGTLTLRTFRDKSA 418

Query: 736 -EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
            +  L V DTG G+   +L     PF          G+GTGLGL  A+ +V  N G   +
Sbjct: 419 KKACLEVSDTGGGIPADKLSVIFDPFFTTKKP----GKGTGLGLSTAQKIVTENGGNIRV 474

Query: 795 FSTPAK-GTLIEIIFPLYDTS 814
                + GT   + FPL+ T+
Sbjct: 475 K-ETGRSGTTFLVEFPLFVTA 494



 Score = 48.1 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/116 (13%), Positives = 36/116 (31%), Gaps = 3/116 (2%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGM-RLCDVSDILHIDPNNHIGDLLK-RQNTWYGKT 147
           D  G +  ++    +  G    +  G     D+           I    +         T
Sbjct: 153 DRKGRILMMNPAAEELTGYSLKEARGKVTAEDLYPPGEAKKVMKILRDERIGGKGKLNCT 212

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHV-NRVDNDPRALGKRLDK 202
            +  +      VP++L+A  IY  ++E      F  +    + +     +  R+ +
Sbjct: 213 RISMVNARGEDVPVELSAAIIYEGDKEVGTMSVFNDLREKLQHEKQMEQMLLRIAR 268



 Score = 41.6 bits (96), Expect = 0.56,   Method: Composition-based stats.
 Identities = 16/186 (8%), Positives = 43/186 (23%), Gaps = 8/186 (4%)

Query: 279 NLNQYTKKQYFGTLQNNSKESFEYL----SHRNHPSLSAYFDEGENLTPETVDKCPIP-F 333
              +    + F  + + + E    +          +L     +    T + +        
Sbjct: 91  EGEEKWDNRVFSPIVDETGEVRYVVECIHDMTPVKTLERELSDAREFTQKIILSSTCAMI 150

Query: 334 FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393
                G +   NP+   LT Y   +          L    +      I            
Sbjct: 151 AADRKGRILMMNPAAEELTGYSLKEA-RGKVTAEDLYPPGEAKKVMKILRDERIGGKGKL 209

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME--IEV 451
                 +   +           I +E   +       N +  +    +  ++ +      
Sbjct: 210 NCTRISMVNARGEDVPVELSAAIIYEGDKEVGTMSVFNDLREKLQHEKQMEQMLLRIARA 269

Query: 452 MQLCSI 457
            ++ S+
Sbjct: 270 EKMASL 275


>gi|23501918|ref|NP_698045.1| sensory box histidine kinase/response regulator [Brucella suis
           1330]
 gi|62289961|ref|YP_221754.1| sensory box histidine kinase/response regulator [Brucella abortus
           bv. 1 str. 9-941]
 gi|256369463|ref|YP_003106971.1| sensory box histidine kinase/response regulator [Brucella microti
           CCM 4915]
 gi|23347861|gb|AAN29960.1| sensory box histidine kinase/response regulator [Brucella suis
           1330]
 gi|62196093|gb|AAX74393.1| sensory box histidine kinase/response regulator [Brucella abortus
           bv. 1 str. 9-941]
 gi|255999623|gb|ACU48022.1| sensory box histidine kinase/response regulator [Brucella microti
           CCM 4915]
          Length = 945

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 99/626 (15%), Positives = 208/626 (33%), Gaps = 51/626 (8%)

Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271
           +G      + Y   +  +    +R  ++V +     +     L       L+++E     
Sbjct: 192 RGQIVYANQAYARMTGATDADGIRPLDQVLASEPAASDAIYRLTNAVRDGLSAQEEVRIS 251

Query: 272 QEDFHTINLNQY--TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE-----NLTPE 324
                  N +      +     L+  ++     ++ +         ++            
Sbjct: 252 GGLSRGANGSLAPVWYRIKARALEGGAEFKGPLVAWQVADISEERAEQERFFQELQEAIN 311

Query: 325 TVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
            +D  P  FF     G + Y N +               +  L+ ++    ++       
Sbjct: 312 HLDHAPAGFFSANPAGRIIYLNATLAEWLGVDLTQFTPGSLTLNDIVAGSGMA------L 365

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
           +   +++      +     +      SLA+ F    +  +         I  +  +   +
Sbjct: 366 IKAVKAEPGTSRNTVIDLDLIKRNGQSLAVRFYHRVQTARDGMPGTTRTIVLDRAEGDDS 425

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG--YPVEDILRKPFTVFL 501
                   ++      +    IA ++ EG  L TN     +F      + I R+     +
Sbjct: 426 SVAQRSAEVRFTRFFNSAPMAIAAVDAEGHTLRTNARFLDIFSGVVDRDAIDRRVKLENV 485

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF----SSCYSLT 557
                    +                 T+    EE+ +   +                ++
Sbjct: 486 VHERDRETFNKALAAAFAGQASISPVDTVLPGNEERHIRFYMSPVTDLGGEAAEEAAVIS 545

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
             + +E K  +N+++ ++K+              ++H+    LTAII  S+++       
Sbjct: 546 AVETTEQKALENQMAQSQKM-----QAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNH--R 598

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
             +P + +  N I ++ N    +V  LL  S+    +  L  E + L + +++ + ++  
Sbjct: 599 ASDPSFPDIMN-IKQNANRAASLVRQLLAFSR----RQTLRPEVLDLTDVLAD-LRMLLA 652

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT------- 730
               K I ++     ++  + ADL   +Q+A+N+  NA    P GGQI + T        
Sbjct: 653 RLVGKDIELKIDHGRDLWPVKADLGQFEQVAVNLAVNARDAMPEGGQITLRTRNIPAADA 712

Query: 731 -------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
                      + V+  V DTG G+    LEK  +PF          G+GTGLGL +   
Sbjct: 713 AKLHYRDLPEADYVVFEVEDTGTGIPADVLEKIFEPFFTTK----EVGKGTGLGLSMVYG 768

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFP 809
           ++    G  Y  S   KGT  +I  P
Sbjct: 769 IIKQTGGFIYCDSEVGKGTTFKIFLP 794



 Score = 73.1 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/394 (11%), Positives = 106/394 (26%), Gaps = 20/394 (5%)

Query: 164 AALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH-LHEIKKGHSSVEKEKY 222
           +A  IY   R     R  GI++ +R++    A+G   +++ +  L +  +     E+   
Sbjct: 28  SANRIYLDARASVPARRAGILNEDRIELPDDAIGASAERRSTRDLRKPSRAGIQHERAVG 87

Query: 223 DIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQ 282
            +  Q               L          L+     +L    + +         +   
Sbjct: 88  LMSRQTDNT-------YPKPLVMPKRGPSAALRLLIVGILLMGAAFIYFLFRDQLGDGFA 140

Query: 283 YTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNL 341
                    +       F            +   + ++L    +D  P    +    G +
Sbjct: 141 LVLMGVLSMVG-----VFYLFGAATGLIQFSQRSDHQDLAHSFMDTQPEGTVISDPRGQI 195

Query: 342 FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401
            YAN ++  +T     D I     +  L   P  SD        +               
Sbjct: 196 VYANQAYARMTGATDADGIRPLDQV--LASEPAASDAIYRLTNAVRDGLSAQEEVRISGG 253

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC-SI--L 458
             +    +   + +    +A +         +  +  D    + + E    +L  +I  L
Sbjct: 254 LSRGANGSLAPVWYRIKARALEGGAEFKGPLVAWQVADISEERAEQERFFQELQEAINHL 313

Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT-VFLEQNTPSVMNHYLTEIL 517
           +    G    N  G I+  N  +++  G  +        T   +   +   +   +    
Sbjct: 314 DHAPAGFFSANPAGRIIYLNATLAEWLGVDLTQFTPGSLTLNDIVAGSGMALIKAVKAEP 373

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
                  ++   +    +   +     ++     
Sbjct: 374 GTSRNTVIDLDLIKRNGQSLAVRFYHRVQTARDG 407



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 47/420 (11%), Positives = 103/420 (24%), Gaps = 38/420 (9%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD--ILHIDPNNHIGDLLKRQNTWYGKT 147
           D  G +   ++   +  G      I   L  V        D    + + ++   +   + 
Sbjct: 190 DPRGQIVYANQAYARMTGATDADGI-RPLDQVLASEPAASDAIYRLTNAVRDGLSAQEEV 248

Query: 148 TL-----WPIEGTNLYVPIDLAALPIYSRNREFSG-FRGFGIVHVNRVDNDPRALGKRLD 201
            +         G+   V   + A  +     EF G    + +  ++    +     + L 
Sbjct: 249 RISGGLSRGANGSLAPVWYRIKARALEGGA-EFKGPLVAWQVADISEERAEQERFFQELQ 307

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR------MKNKVSSLTEYYAHKDDVLK 255
           +  +HL     G  S       I+   +    L           ++           ++K
Sbjct: 308 EAINHLDHAPAGFFSANPAGRIIYLNATLAEWLGVDLTQFTPGSLTLNDIVAGSGMALIK 367

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN--NSKESFEYLSHRNHPSLSA 313
             K    TS  + +                     T ++          L        S 
Sbjct: 368 AVKAEPGTSRNTVIDLDLIKRNGQSLAVRFYHRVQTARDGMPGTTRTIVLDRAEGDDSSV 427

Query: 314 YFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLT-KYKSVDDIEIAGGLSTLLD 371
                E       +  P+    V + G+    N  FL +       D I+    L  +  
Sbjct: 428 AQRSAEVRFTRFFNSAPMAIAAVDAEGHTLRTNARFLDIFSGVVDRDAIDRRVKLENV-V 486

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
             +  +         +    +       L     N E  +     P              
Sbjct: 487 HERDRETFNKALAAAFAGQASISPVDTVL---PGNEERHIRFYMSPVTDLGGEAAEEAAV 543

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSI----------LEATSDGIAIINREGIILSTNRAV 481
               E  + +  + +M  +  ++ ++                 I + +    +L TN   
Sbjct: 544 ISAVETTEQKALENQM-AQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSD---LLLTNHRA 599



 Score = 48.5 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 45/134 (33%), Gaps = 12/134 (8%)

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY-LT 514
           S ++   +G  I +  G I+  N+A +++ G    D   +P    L     +    Y LT
Sbjct: 177 SFMDTQPEGTVISDPRGQIVYANQAYARMTGATDAD-GIRPLDQVLASEPAASDAIYRLT 235

Query: 515 EILSLDLRQTLEKITLG---STKEEKLLSLRIIIKKLPFSSC-------YSLTMHDISEW 564
             +   L    E    G         L  +   IK               +  + DISE 
Sbjct: 236 NAVRDGLSAQEEVRISGGLSRGANGSLAPVWYRIKARALEGGAEFKGPLVAWQVADISEE 295

Query: 565 KQEKNKLSHAKKIA 578
           + E+ +     + A
Sbjct: 296 RAEQERFFQELQEA 309


>gi|238794991|ref|ZP_04638587.1| Sensor kinase protein rcsC [Yersinia intermedia ATCC 29909]
 gi|238725694|gb|EEQ17252.1| Sensor kinase protein rcsC [Yersinia intermedia ATCC 29909]
          Length = 932

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 93/370 (25%), Positives = 160/370 (43%), Gaps = 29/370 (7%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
             ++E        I+ +   GI+I+   +G  + +N                  +   L 
Sbjct: 328 ALRLEEHEQFNRKIVASAPVGISILRISDGTNILSNELA-------------HNYINLLT 374

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
                 +   + E  +  +           T     L +  +  +          + D+S
Sbjct: 375 NEDRERITRIICEQQANFVDVM--------TSNNNNLQISFVHSRYRNEDVAICVLVDVS 426

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
              + +  L      AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R
Sbjct: 427 SRVKMEESLQEMAAAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPHGVDR 485

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                  ++ S  L+L I++D+LD SKIES ++ +     S  E ++   +       +K
Sbjct: 486 ---LVTAMNNSSGLLLKIISDILDFSKIESEQLKIEPSEFSTVEVITHITANYLPLVVKK 542

Query: 683 RILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
           R+ +      ++P ++L D   ++Q+  N+L+NAI FT +G  II+       + +  RV
Sbjct: 543 RLGLYCFIEPDVPRQMLGDSVRLQQVISNLLNNAIKFTDTG-CIILQVRVR-GDYLEFRV 600

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
           RDTGVG+ + E+ +   PF Q+    Q   +GTGLGL + + +V+   G   + S    G
Sbjct: 601 RDTGVGINSREINQLFDPFFQVGTGVQRHFQGTGLGLAICEKLVNLMDGDVEVVSELGMG 660

Query: 802 TLIEIIFPLY 811
           ++  I  PLY
Sbjct: 661 SIFAIRIPLY 670


>gi|330995207|ref|ZP_08319120.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Paraprevotella xylaniphila YIT 11841]
 gi|329576349|gb|EGG57863.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Paraprevotella xylaniphila YIT 11841]
          Length = 1311

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 71/266 (26%), Positives = 116/266 (43%), Gaps = 9/266 (3%)

Query: 553  CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
                 +  +     ++ +  +     ++    K  F   +SHE+RTPLT II   E +  
Sbjct: 776  GVVAVLFILIRHVLKRQQAQNQLAAQKQLEEMKYRFFTNISHELRTPLTLIIAPLESLLK 835

Query: 613  QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
            +      NP   +    IDR+ + +L +VN LLD  +IE     L  E  +L + +S   
Sbjct: 836  KE----ENPDTRKQLKTIDRNAHNLLSLVNQLLDFRRIEMKGETLALETFNLKDMLSRIY 891

Query: 673  SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
                  + EK I            I AD   ++++  N+LSNA  FTP GG + +     
Sbjct: 892  ESFLPMSEEKNIRFDFHCHPETFLITADSPKIEKVVNNLLSNAFKFTPQGGHVTLKAYPE 951

Query: 733  S---NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
                 E  +++V D G+G+   E E   + F Q  + +     G+G+GL +AK  V  + 
Sbjct: 952  PSDGREMAVIQVEDDGIGIPAEEQEHIFERFYQANSHKDNT--GSGIGLNVAKEYVQLHN 1009

Query: 790  GKFYIFSTPAKGTLIEIIFPLYDTSH 815
            GK  + S P KG+   +  P+   SH
Sbjct: 1010 GKIEVSSVPGKGSCFTVRIPVGKISH 1035


>gi|257484380|ref|ZP_05638421.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. tabaci ATCC 11528]
          Length = 283

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 88/287 (30%), Positives = 150/287 (52%), Gaps = 15/287 (5%)

Query: 530 LGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
               K+       ++I            +S    DIS+ +  +  L  A++ AE+ S  K
Sbjct: 1   WRRRKDGSRFWASVVITAQYDGNDELRGFSKITRDISDRRVAEIALGTAREEAERASRAK 60

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
           S+FL+R+SHE+RTPL +I+GF++++                  +I R+G  +L ++N++L
Sbjct: 61  SEFLSRMSHELRTPLNSILGFAQLL-----DMDSPASQRPQIGHILRAGQHLLKLINEVL 115

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT--SFANNIPRILADLRS 703
           DI++IE+G ++L  EPVSL   + EA+ LV   A +  I ++      + +  ++AD + 
Sbjct: 116 DIARIEAGHVSLSLEPVSLSSVLEEALVLVSPMAADANIELKALPQLPDKLG-VVADRQR 174

Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
           + Q+ LN+LSNAI +    GQ+ I    +    V + V DTG G+    + +  KPF ++
Sbjct: 175 LIQVLLNLLSNAIKYNRPEGQVRIEVEQSDE-RVTVSVIDTGYGIAPERIGQLFKPFERL 233

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
                   EGTGLGL L+K+M++   G   + +TPA+G    +  PL
Sbjct: 234 DA--NPSVEGTGLGLALSKSMLEMMHGTLSVQNTPAEGCRFILELPL 278


>gi|296127492|ref|YP_003634744.1| multi-sensor signal transduction histidine kinase [Brachyspira
           murdochii DSM 12563]
 gi|296019308|gb|ADG72545.1| multi-sensor signal transduction histidine kinase [Brachyspira
           murdochii DSM 12563]
          Length = 585

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 78/370 (21%), Positives = 158/370 (42%), Gaps = 35/370 (9%)

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
           + E  +L  +LE  + GI  +N+   I   N+    L      +I         E    S
Sbjct: 244 QTEKEKLNYVLENIAQGIIAVNKNKEIFFINQYALDLL-----EISDSNIKKLSEIIKSS 298

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT--MHDISEWK 565
            +   +   +  +     +        +E  + + I I  +  +   S      D+++ +
Sbjct: 299 EVIERINNAIEFNRFSKFDV-------KEHTMDIEITIIPIRNNENISALIKFEDVTDIR 351

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + + +              K DF    SHE++TPLT+IIG+SE++     G        +
Sbjct: 352 KVEIE--------------KQDFFINASHELKTPLTSIIGYSELLIATGGGKN----QAD 393

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           +   I+     + D+V D+L +S+IE+       E + + + + +     ++ A ++ I 
Sbjct: 394 FIKRINNEALRMKDLVIDMLTLSRIEANWKETIDEKIDIKDIILDVFESNKIKAEQREIN 453

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           I     +    I+A+   + ++  N++ NAI +T  GG + +     +++ V   V+DTG
Sbjct: 454 IELDIESA--FIMANKEKITEVVNNLVDNAIKYTDDGGSVKVFLKQKADKAV-FTVKDTG 510

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
            G+    L +  + F ++ N++ ++  GTGLGL + K + +      +I S    GT + 
Sbjct: 511 CGIAPQYLNRIFERFFRVKNNKYLKVHGTGLGLTIVKNICNYYNANIHIKSEENVGTEMS 570

Query: 806 IIFPLYDTSH 815
           ++F LY    
Sbjct: 571 VVFNLYREEA 580


>gi|197337759|ref|YP_002158682.1| sensory transduction protein kinase [Vibrio fischeri MJ11]
 gi|197315011|gb|ACH64460.1| sensory transduction protein kinase [Vibrio fischeri MJ11]
          Length = 798

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 81/253 (32%), Positives = 134/253 (52%), Gaps = 10/253 (3%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I++  Q + KL + K+ AE  +  K+ FLA +SHEIRTPL  IIG S V+   +  P+  
Sbjct: 267 IAKRHQNEKKLINEKEEAENANKAKTTFLANMSHEIRTPLNGIIGMSGVLAETKLTPI-- 324

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
              ++Y N I+ S   +L ++ND+LD+SKIE+G   ++ +P ++ E + + +S+    A 
Sbjct: 325 --QLDYLNTIETSSQTLLVLINDILDLSKIEAGNFAIYSQPSNVREVIFDTLSIDIAKAT 382

Query: 681 EKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIIST----THTSNE 735
           EK + +    + ++P  L  D   +KQ+ +N+ SNA+ FT  G  I IS        +  
Sbjct: 383 EKNLDLHIHISPDVPNFLTLDEHRIKQVLMNLTSNAMKFTHKGF-ISISVSFSNRVENEG 441

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            + + V+D+G+G+     E  + PF Q  +S   R  GTGLGL +   +++   G   I 
Sbjct: 442 YLTIAVKDSGIGINTNAKENILNPFIQGDSSITRRFGGTGLGLTITNQLIELMGGALDIE 501

Query: 796 STPAKGTLIEIIF 808
           S   KG+      
Sbjct: 502 SEQEKGSRFSFRI 514


>gi|254423242|ref|ZP_05036960.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Synechococcus sp. PCC 7335]
 gi|196190731|gb|EDX85695.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Synechococcus sp. PCC 7335]
          Length = 696

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 98/430 (22%), Positives = 169/430 (39%), Gaps = 45/430 (10%)

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII----NREGIIL- 475
           A   P        + E          ++   ++  + +E  +D   I+    + EG I  
Sbjct: 122 ARLVPAVKRALREQRERKALLQATADLQESEIRFRTSVETMADCFIILSSVRDSEGFIQD 181

Query: 476 ----STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH-----------YLTEILSLD 520
                 N A  K      E  L K     +     +                   ++   
Sbjct: 182 FTVSYLNAAACKALSVSQEKQLGKSVYTVIPAFKATAREDSEGLEDLDLFLVFCGVIETG 241

Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAE- 579
              T E         E+ + + I I KL   +   +T  DI++ KQ++ +       AE 
Sbjct: 242 YPFTGELFVNSCQSSEQPVVVAIQIVKL--DNQLVVTWRDITQKKQDERRYLQLLAAAES 299

Query: 580 ------KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
                 + +  K + L  +S+E+R+PL+ I+G+ E I +                   R+
Sbjct: 300 ACNQLERANQFKDNLLGSLSNELRSPLSTIMGWLE-ISSDCLD--DKALVARAIQTSYRN 356

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV---SEAISLVQLYANEKRILI---R 687
             ++  ++ DLLD+S++         EP+S+D  V    E +  +   A  K I I    
Sbjct: 357 AEVLDQLIEDLLDVSRMPHSGFQCRLEPLSIDSLVCLVLEVVDAIAPAARNKDIEIVLPE 416

Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747
               +    +L D   +KQ+  N+LSNA+ FTP+GG+I IS    S+  V+L V+DTG+G
Sbjct: 417 VVADDVEDSLLGDASRLKQVFRNLLSNALKFTPAGGRITISFERLSDSIVVL-VQDTGIG 475

Query: 748 MTNYELEKAMKPFGQIP-----NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST-PAKG 801
           + + E+    + F Q        S      G GLGL + + +V A+ G+    S  P +G
Sbjct: 476 IASEEIPHLFERFWQGEHTLSTASVHSAYAGLGLGLSIVRHIVLAHGGQVSADSAGPGQG 535

Query: 802 TLIEIIFPLY 811
           +   +  PL 
Sbjct: 536 SSFRVELPLA 545


>gi|153872278|ref|ZP_02001216.1| sensor histidine kinase/response regulator [Beggiatoa sp. PS]
 gi|152071255|gb|EDN68783.1| sensor histidine kinase/response regulator [Beggiatoa sp. PS]
          Length = 623

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 81/275 (29%), Positives = 138/275 (50%), Gaps = 18/275 (6%)

Query: 549 PFSSCYSLTMHDISEWKQEKN-KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
                  L + + ++  +++  +L  AKK+AE  +  KS FLA +SHE+RTP+ AI+GFS
Sbjct: 312 QHRDHLELLVSERTQRLEQQTIELISAKKVAETANQSKSLFLANMSHELRTPMNAILGFS 371

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
           ++++  +               I RSG  +L ++ND+LD+SKIESG+M L  E   L + 
Sbjct: 372 QLMERDQAITST---QQNNLRIIQRSGEHLLSLINDVLDMSKIESGRMTLETESCDLPQT 428

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQII 726
           + +   ++ + A  K +L    +   +   I  D+  ++QI +N+L NAI +T  GG + 
Sbjct: 429 LKDIADMIHIRAKNKNLLFTWEYDPKLAHYIKTDVGKLRQILINLLGNAIKYTHEGG-LS 487

Query: 727 ISTTHTS-----------NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           +                    V + V D+G G+   E++K    F Q+ +S+ I  EGTG
Sbjct: 488 LRVHSKEMATTSASEKPYQHRVYVEVEDSGAGIGPEEVDKIFDAFVQVSSSKGIS-EGTG 546

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           LGL + +  +    G   + S   KG+L +   P+
Sbjct: 547 LGLSITRRYIQMMGGDIRVMSELGKGSLFKFDIPV 581


>gi|325916989|ref|ZP_08179230.1| putative periplasmic ligand-binding sensor domain [Xanthomonas
            vesicatoria ATCC 35937]
 gi|325536799|gb|EGD08554.1| putative periplasmic ligand-binding sensor domain [Xanthomonas
            vesicatoria ATCC 35937]
          Length = 1185

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 102/509 (20%), Positives = 197/509 (38%), Gaps = 38/509 (7%)

Query: 333  FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL-LDAPKLSDNNAIKPVMLYRSDR 391
             ++Y  G++        +  +   +   E    +    L+   L       P  L+R D 
Sbjct: 531  IWLYMAGSIERWEQRDGVWKQVSRIRAAEGFPAMDAYGLELDALGRVWMSGPRGLWRIDP 590

Query: 392  TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED-----------VDT 440
                A  R  + + +   S   +      +N                             
Sbjct: 591  RTTPAKIRSFSAR-DGLTSQEFSRHCLLMSNNGVLVGGTADGFTLLIDTNAPDVPSFTPQ 649

Query: 441  RINKRKMEIEVMQLCSILEATSDGIAII--NREGIILS---------TNRAVSKLFGYPV 489
               +        +  ++      G +++  +R+  I            NR  ++L G+  
Sbjct: 650  MRLEAVSVQHGDRRRAL--PIGGGFSLVPSDRQLRINMRLLSFIDPMANRYRTRLKGFDN 707

Query: 490  EDI----LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
            + +            L      +    +  + +    Q+L+   L       +    I +
Sbjct: 708  DWVEHGAAGMREFSSLPPGNYVLEMQGVDPLGNASQVQSLQFSVLPPWWRSDVGIALICM 767

Query: 546  KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
              L  S+  +         + +     H +++AE+ S  K+ FLA + HE+RTP+T ++G
Sbjct: 768  IGLLLSALLAAAYRHRVRMRAQWQVAQHKRELAEQASLAKTRFLATLGHEVRTPMTGVLG 827

Query: 606  FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
             SE++         + R   YA+ I  +G  +L +VND LD+++IE+GK+ L      L 
Sbjct: 828  MSELLLQTSL----DARQQGYASAIQSAGKHLLRLVNDALDLARIEAGKLPLDNRDFDLR 883

Query: 666  EAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG- 723
              + +A+ LV+  A +K++    +  + +P  +  D   V+QI LN+L NA+ FT  GG 
Sbjct: 884  LLIGQAVELVRPSAEQKQLAFECALDDALPPALHGDASRVQQILLNLLFNAVKFTERGGV 943

Query: 724  QIIISTT-HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ-IRGEGTGLGLPLA 781
            Q+ +S    +  + + + V DTG GM+  +  +  + F Q   +    R  G+GLGL + 
Sbjct: 944  QLRVSALPQSPAQGIRVEVCDTGPGMSAEQRGRLFQRFEQAEGALTLARHGGSGLGLAIC 1003

Query: 782  KAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            + +  A  G   + S   +G    +  PL
Sbjct: 1004 RELAAAMGGAVSVDSELGQGACFVVELPL 1032


>gi|295107410|emb|CBL04953.1| Signal transduction histidine kinase [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 727

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 82/288 (28%), Positives = 140/288 (48%), Gaps = 9/288 (3%)

Query: 537 KLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
               + +    +  +   +L   +     + K  L  A  +A+  S+ KS FL+ +SH+I
Sbjct: 168 GWAVVLMAGVAVSLAVYLALMYRNRKREDRLKADLREALSLAQIASAAKSQFLSNMSHDI 227

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTP+ AI+G + + K     P    R     + I  S   +L ++ND+LD+ KIESGK+ 
Sbjct: 228 RTPMNAIVGLTTIAKAHLHEP---ERMAACLDRIQSSSRHLLSLINDVLDMGKIESGKIV 284

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN-NIPRILADLRSVKQIALNILSNA 715
           L+ +  S  + V+  I++ Q  A  K + +  +        ++ D   + Q  +N++SNA
Sbjct: 285 LNEDRFSFPDFVNGVIAIAQPQAKAKNLSLDITLGTIQQENVVGDAMRLNQALINLVSNA 344

Query: 716 IHFTPSGGQIIISTTHTSNE-----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           + +TP GG I +S +   +      +    V+DTG+GM+   LE+   PF +  +    R
Sbjct: 345 VKYTPDGGSIRLSLSERPSHRPGCHDYRFVVQDTGLGMSPEFLERLFDPFEREESDATKR 404

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
            EGTGLG+ + K +VD   G   + STP +G+   +  PL       D
Sbjct: 405 IEGTGLGMAITKNVVDMMGGSIEVESTPGEGSTFIMTVPLQPLDEEED 452


>gi|148254874|ref|YP_001239459.1| putative sensor histidine kinase membrane protein [Bradyrhizobium
           sp. BTAi1]
 gi|146407047|gb|ABQ35553.1| putative sensor histidine kinase, putative membrane protein
           [Bradyrhizobium sp. BTAi1]
          Length = 532

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 102/249 (40%), Positives = 157/249 (63%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I E +Q K     A+  AE  +  KS FLA++SHE+RTPL AI+GFSEV+K++ FG    
Sbjct: 239 IGELEQAKAISDEARYRAEAANVAKSRFLAQMSHELRTPLNAILGFSEVMKSEIFGAHAV 298

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
           P Y EY+  I  SG  +L+++N++LD+S+IE+G+  L+ E V+L   V++   L++L A+
Sbjct: 299 PVYKEYSADIHNSGVHLLNLINEILDLSRIEAGRYELNEEAVALVHVVADCHHLLKLRAS 358

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
            + + I   F  N+PR+ AD R+++Q+ LN+LSNAI FTP GG+I +    T++    L 
Sbjct: 359 SRGLTIHEVFEQNMPRLWADERAIRQVVLNLLSNAIKFTPQGGEIWLKAGWTASGGQYLS 418

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V+DTG G+   E+   +  FGQ  NS +   +G GLGLP+AK +++ + G F + S    
Sbjct: 419 VKDTGSGIPENEIPIVLASFGQGSNSIKSAEQGAGLGLPIAKNLIEMHGGTFTLKSKVRI 478

Query: 801 GTLIEIIFP 809
           GT + + FP
Sbjct: 479 GTEVIVTFP 487


>gi|312126426|ref|YP_003991300.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311776445|gb|ADQ05931.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 357

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 76/348 (21%), Positives = 153/348 (43%), Gaps = 17/348 (4%)

Query: 465 IAIINREGIILST-NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE-ILSLDLR 522
           I +++   +I     +A+     +  ++++ +     L      +    ++  +      
Sbjct: 18  ICLVSAFLVITYFITKAIYTKLSWQPQELVAQIINSILGIILSGITIRLVSSFLFKGRRE 77

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES 582
             L K  + +  +       + ++KL   +   + + D          +++     +   
Sbjct: 78  HPLWKEVINAINKISKGDFNVNLEKLNKQNHPFIELID---------GINNMAANLKAME 128

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
             + +F++ +SHEI +PLT+I GF+  +KN+        +   Y + I+     +  +  
Sbjct: 129 EMRQEFISNISHEIGSPLTSIRGFASALKNENLSF---EQRKHYLDIIENECIRLSKLSE 185

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702
           +LL ++ ++S +  LH     LD+ +   I   +   +EK + I  S    I  I AD  
Sbjct: 186 NLLRLTMLDSEQYPLHLTTYRLDKQIQLTILEFEPQWSEKELDITLSLDEII--ITADQD 243

Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
            +KQ+  N++ NAI FT  GG I I   +      I+ + DTG+G++  +L +  + F +
Sbjct: 244 LLKQVWQNLIDNAIKFTLKGGAIKIQL-YKKETYAIVTISDTGIGISEQDLPRIFERFFK 302

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
              S+     G+GLGL + K +V+ + GK ++ S   KGT   I  PL
Sbjct: 303 ADKSRNRAVSGSGLGLSIVKKIVELHNGKIFVNSQLGKGTEFIIQLPL 350


>gi|262382099|ref|ZP_06075237.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262297276|gb|EEY85206.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 771

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 89/387 (22%), Positives = 166/387 (42%), Gaps = 23/387 (5%)

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDI 492
             E +  +  + K++ E   L   L++ +  I      +G+    NR      G P   +
Sbjct: 386 MQEVLHKKDAQEKLKREKTFLSFALDSGN--IFAFRYSKGVFEFDNR-FYHYLGIPCLPM 442

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
             + F   +              +L              +  ++          +     
Sbjct: 443 SIEEFQNTIHPEELEDFLRN-RNLLDTGFLSRKVTQRRCNFNKKGYEWWEFRYAQNKNEK 501

Query: 553 CYS---------LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
                           +I   K  +N L  A++ AE+    K  FLA +SHEIRTPL AI
Sbjct: 502 DSVSGDEAVEVSGLCLNIQRIKDTENSLIAARRKAEESDRMKLVFLANMSHEIRTPLNAI 561

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +GFS+++ +    PL      E+ + I ++ +L+L ++ND+LD+S+IESG M+  +E + 
Sbjct: 562 VGFSQLLNSDM--PLEPEEKAEFIDLITKNSDLLLKLINDILDLSRIESGSMSFSYENLD 619

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
           L + + +     QL   E  + ++    +    I +D   + Q+  N ++NA+ FT  G 
Sbjct: 620 LSKLMGDIFHTHQLMMPE-GVELKIRVPHEPLIIRSDHFRLTQVCTNFINNAVKFTAKG- 677

Query: 724 QIIISTTHTSNEE-VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
            I I    +++ + +++ V+DTG G+ + + EK  + F ++        +GTGLGL + +
Sbjct: 678 YIEIGYELSADGKSILISVKDTGKGIPDDKKEKVFERFQKLD----EFAQGTGLGLAICQ 733

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFP 809
           ++V    G   + S    G+   I  P
Sbjct: 734 SIVHTFHGSISLESEVGVGSKFTISLP 760


>gi|83311105|ref|YP_421369.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82945946|dbj|BAE50810.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 754

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 98/654 (14%), Positives = 225/654 (34%), Gaps = 42/654 (6%)

Query: 171 RNREFSGFRG--FGIVHV-NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ 227
            + E  G +G   GIV + +    DP               E+ +      K    +F  
Sbjct: 124 DHGELYGIKGRIVGIVTLNSDNTADPWEAEAIRQFAAGTKSEVMEVSDIDGKPFLRLFKP 183

Query: 228 QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287
               P  +  +      +               +       L  + +        +    
Sbjct: 184 FRMEPSCQKCHGHLGFQDGEV-------RGGIGVSVPLAPYLTGEANVVRTMATTHGAIW 236

Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANP 346
             G L         +     +  ++    + E      V+     F++  + G L   N 
Sbjct: 237 GLGMLAIGWIARRSHSRLAANARMTRALHDSEKHYRAIVETSSDGFWMTDNRGQLLEVNH 296

Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
           ++   + Y     +           +  + D  AI+      +    + A   L     +
Sbjct: 297 AYAARSGYSREQLL-----------SMSIQDLEAIETDDATHARIAAVMAGQDLRFETRH 345

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
           R  +  +  +    +     +        +  + + ++R +     +   + E       
Sbjct: 346 RTRNGEIWDVEVSTSYFAGGDGRLFVFLRDISERKRDERVLAESERRFREMAETIDQVFY 405

Query: 467 IINREG-IILSTNRAVSKLFGYPVEDILRKP--FTVFLEQNTPSVMNHYLTEILSLDLRQ 523
           + +++       + A  +L+G+  E ++ +P  +  ++       + + L   +      
Sbjct: 406 VADQDYSRFHYISPAFLRLWGHAPEVLMAEPSLWRDWVHPEDRDGVMNLLAARIGSGE-- 463

Query: 524 TLEKITLGSTKEEKLLSLRI----IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579
                      + +++ L      +               DI+  K  + +L    +  E
Sbjct: 464 -YAADFRIIRPDGEIVWLHAKAFEVANPTSGQPYVLGFHTDITMAKSIEAELRDKNQALE 522

Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639
           + ++    +    SH++R PL  I  FS +++ +  G L +    E+   +  + N +  
Sbjct: 523 RSNAELEAYAYVASHDLREPLRNITAFSTLLRRRLEGRLDDEEQ-EFLKIVTDAANRMDC 581

Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA 699
           +V DLL++S+I   + ++H   VSL E +  A S ++      +  I  S  + +P I+ 
Sbjct: 582 LVRDLLELSRIGRNERDMHL--VSLSELMQAAKSSLRSQMEAAQADI--SITSPLPVIMG 637

Query: 700 DLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRVRDTGVGMT--NYELEKA 756
           +   + ++ LN+  NAI +   G   I +       E   + + D G+GM       E+ 
Sbjct: 638 NDDELYRVLLNLFGNAIKYRGEGPVHIAVHCEAEGPELWRMTIADNGIGMELGKGYEERI 697

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFP 809
              F ++   +   G GTG+GLP+ + +++ + G+ +  +  P KGT +  + P
Sbjct: 698 FGLFQRLHQ-RDEYGGGTGIGLPVCRKIIERHGGRIWAETDGPGKGTRMIFVLP 750



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/253 (11%), Positives = 63/253 (24%), Gaps = 17/253 (6%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK 146
           W  D  G L E++       G    +++ M + D+  I   D  +     +        +
Sbjct: 283 WMTDNRGQLLEVNHAYAARSGYSREQLLSMSIQDLEAIETDDATHARIAAVMAGQDLRFE 342

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
           T      G    V +  +              R F  +           +    +++F  
Sbjct: 343 TRHRTRNGEIWDVEVSTSYFAGGDG-------RLFVFLRDISERKRDERVLAESERRFRE 395

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSP--------PPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
           + E       V  + Y  F   SP         P + M          +    D +    
Sbjct: 396 MAETIDQVFYVADQDYSRFHYISPAFLRLWGHAPEVLMAEPSLWRDWVHPEDRDGVMNLL 455

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
              + S E            +            + N +      L      +++   +  
Sbjct: 456 AARIGSGE--YAADFRIIRPDGEIVWLHAKAFEVANPTSGQPYVLGFHTDITMAKSIEAE 513

Query: 319 ENLTPETVDKCPI 331
                + +++   
Sbjct: 514 LRDKNQALERSNA 526


>gi|325265248|ref|ZP_08131973.1| sensor histidine kinase/response regulator [Clostridium sp. D5]
 gi|324029427|gb|EGB90717.1| sensor histidine kinase/response regulator [Clostridium sp. D5]
          Length = 852

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 81/261 (31%), Positives = 134/261 (51%), Gaps = 10/261 (3%)

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
            + +   S  + + N+L  A+++A + S  KS+FLA +SH+IRTP+ AI+G + +     
Sbjct: 315 LIFLRYFSMTRCQLNELEMARQVALEASKAKSEFLANMSHDIRTPMNAIVGMTAIATAHM 374

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                  +       I  SG  +L ++ND+LD+SKIESGK+ L  E +SL E V   +++
Sbjct: 375 D---DREQLQNCLKKITLSGKHLLGLINDVLDMSKIESGKLTLTTEQISLKEVVEGIVNI 431

Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIST---- 729
           +Q   N K+  +     N +   +  D   + Q+ LN+LSNA  +T  GG I +S     
Sbjct: 432 MQPQVNAKKQTLDIHVENILTENVWCDGIRLNQVLLNLLSNATKYTQEGGSIRLSLFEEK 491

Query: 730 THTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
           +      V +   V+D G+GM+   ++K    + +   ++  + EG GLG+ + K +VDA
Sbjct: 492 SLKGENYVRIHINVKDNGIGMSPDFVKKIYDSYSRADGARIHKTEGAGLGMAITKYIVDA 551

Query: 788 NMGKFYIFSTPAKGTLIEIIF 808
             G   + S P KGT   I  
Sbjct: 552 MEGTIDVQSEPDKGTEFHITL 572


>gi|320158132|ref|YP_004190510.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           vulnificus MO6-24/O]
 gi|319933444|gb|ADV88307.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           vulnificus MO6-24/O]
          Length = 1176

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 88/374 (23%), Positives = 165/374 (44%), Gaps = 15/374 (4%)

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
           E E   L  I++  ++ + I + +G ++ +N +      Y   +           Q +  
Sbjct: 500 EKEKQWLTQIIQELNNKVFIHDDKGQLVLSNCS-----EYLKGNCTNCQIKNAATQISLV 554

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL-TMHDISEWKQ 566
                + ++L     +   +      + E +   R  I+ L     + L  + D++  K+
Sbjct: 555 GDFEEVQQVLRGKRIKEYSQTVNCDLQIEHIYRERKAIRSLDHRKQFVLTVLQDVTAQKE 614

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
            +  L  A+  A+     +  FLA +SHE+RTPL A  G    + +       + R  E 
Sbjct: 615 REAALIAAQHEAQSAVKARERFLATMSHELRTPLAATYG----LLDLVATHSTSERDKEL 670

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
                +S N +  +V+++LD SK+E+G++ +H     L   +S+ +   +  AN K +  
Sbjct: 671 VLRAKQSLNHLNLLVDEVLDYSKLEAGELQIHPAKNELLRLLSQTLRGFEAKANSKGLDY 730

Query: 687 RTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
             +    ++   + D     QI  N++SNAI FT  G  I ++        ++L ++DTG
Sbjct: 731 TVNIIPFSLRWAMIDDLRFNQIVSNLISNAIKFTEQG-DITLTAQVVKE-RLLLTIKDTG 788

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +GMT  +L    KPF Q  +S   +  GTGLGL + + ++    G   + S    GT ++
Sbjct: 789 IGMTQEQLANIFKPFVQADDSITRQFGGTGLGLAIVEQLLKQMGGHIALHSALNVGTQVD 848

Query: 806 IIFPLY--DTSHPH 817
           I  PL   + ++P 
Sbjct: 849 IELPLTPCEGAYPE 862


>gi|153833290|ref|ZP_01985957.1| tmao reductase sytem sensor tors [Vibrio harveyi HY01]
 gi|148870426|gb|EDL69347.1| tmao reductase sytem sensor tors [Vibrio harveyi HY01]
          Length = 985

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 80/261 (30%), Positives = 131/261 (50%), Gaps = 10/261 (3%)

Query: 564 WKQEKNKLSHA--KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
            +  +  L+HA  +K AE+ S  KS FLA +SHEIRTP+  ++G + ++ +       NP
Sbjct: 447 RRLNEEVLNHAKARKQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLIDSGL----NP 502

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
               YA  I+RSG  +L I+ND+LD SKIE+G + +      L + V +   L+   A E
Sbjct: 503 MQKRYAEIINRSGKTLLAILNDVLDYSKIEAGHLEIRSLGFDLHQMVEDTFQLMNGKAQE 562

Query: 682 KRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVIL 739
           K++L      +++ R    D+  + Q+  N++ NAI FT  G   I +S       +V+ 
Sbjct: 563 KKLLFSYHIESDVGRYWKGDVTRINQVLSNLVGNAIKFTEEGEIDIYVSLNPEDESQVLF 622

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V DTG+G+   + +     F Q       +  GTGLGL +++ ++ A  G   + S   
Sbjct: 623 EVSDTGIGIAKKDQKTLFDAFTQAEGGMN-QTGGTGLGLAISRRIIQAMGGCLDVDSEEG 681

Query: 800 KGTLIEIIFPLYDTSHPHDCI 820
            G+      PL + S P + +
Sbjct: 682 HGSRFWFSIPL-EESEPVETV 701


>gi|138895266|ref|YP_001125719.1| two component system histidine kinase [Geobacillus
           thermodenitrificans NG80-2]
 gi|134266779|gb|ABO66974.1| Two component system histidine kinase [Geobacillus
           thermodenitrificans NG80-2]
          Length = 456

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 59/227 (25%), Positives = 110/227 (48%), Gaps = 5/227 (2%)

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
             +++FLA +SHE+RTPLT + G++++ +      +       Y + I      +  +V 
Sbjct: 233 KERNEFLASISHELRTPLTYVKGYADIARR---PNMEEEERNRYLSIIYEEAEHMQKLVK 289

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702
           DL +++K++     +H EP +L   + +    +      K++ +      NI  +  D +
Sbjct: 290 DLFELAKMDQHSFQIHKEPTNLCSFLKKLHDKMHPAFQAKKMSLVYQCEKNI-TVHIDQK 348

Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
             +Q+ +N+L NA+ +   G  + I      +  V++ V D G G+   +L    + F +
Sbjct: 349 RFEQVMINLLDNALKYADQGSTVSIDARAEKDNIVMI-VSDEGRGIPEEDLPHIFERFYR 407

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +  S+     GTGLGL +AK +V+A+ G  Y  S   KGT + I  P
Sbjct: 408 VDKSRSRTSGGTGLGLAIAKEIVEAHGGSIYAASEYGKGTNMIITLP 454


>gi|37675989|ref|NP_936385.1| sensor kinase VieS [Vibrio vulnificus YJ016]
 gi|37200529|dbj|BAC96355.1| probable sensor kinase VieS [Vibrio vulnificus YJ016]
          Length = 1243

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 88/374 (23%), Positives = 165/374 (44%), Gaps = 15/374 (4%)

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
           E E   L  I++  ++ + I + +G ++ +N +      Y   +           Q +  
Sbjct: 567 EKEKQWLTQIIQELNNKVFIHDDKGQLVLSNCS-----EYLKGNCTNCQIKNAATQISLV 621

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL-TMHDISEWKQ 566
                + ++L     +   +      + E +   R  I+ L     + L  + D++  K+
Sbjct: 622 GDFEEVQQVLRGKRIKEYSQTVNCDLQIEHIYRERKAIRSLDHRKQFVLTVLQDVTAQKE 681

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
            +  L  A+  A+     +  FLA +SHE+RTPL A  G    + +       + R  E 
Sbjct: 682 REAALIAAQHEAQSAVKARERFLATMSHELRTPLAATYG----LLDLVATHSTSERDKEL 737

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
                +S N +  +V+++LD SK+E+G++ +H     L   +S+ +   +  AN K +  
Sbjct: 738 VLRAKQSLNHLNLLVDEVLDYSKLEAGELQIHPAKNELLRLLSQTLRGFEAKANSKGLDY 797

Query: 687 RTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
             +    ++   + D     QI  N++SNAI FT  G  I ++        ++L ++DTG
Sbjct: 798 TVNIIPFSLRWAMIDDLRFNQIVSNLISNAIKFTEQG-DITLTAQVVKE-RLLLTIKDTG 855

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +GMT  +L    KPF Q  +S   +  GTGLGL + + ++    G   + S    GT ++
Sbjct: 856 IGMTQEQLANIFKPFVQADDSITRQFGGTGLGLAIVEQLLKQMGGHIALHSALNVGTQVD 915

Query: 806 IIFPLY--DTSHPH 817
           I  PL   + ++P 
Sbjct: 916 IELPLTPCEGAYPE 929


>gi|319952951|ref|YP_004164218.1| multi-sensor signal transduction histidine kinase [Cellulophaga
            algicola DSM 14237]
 gi|319421611|gb|ADV48720.1| multi-sensor signal transduction histidine kinase [Cellulophaga
            algicola DSM 14237]
          Length = 1160

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 104/773 (13%), Positives = 251/773 (32%), Gaps = 44/773 (5%)

Query: 50   EQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNY 109
            + S       +S  N   +          I       + +D H    +I+ +  K   + 
Sbjct: 401  DVSARIALELKSKENAEKVKESEEKYRTAIEEASDGIFVLDEHFNFIDINIQFCKFFRSP 460

Query: 110  AFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIY 169
                I   +  +     +         +           +   +G+     + +  +P  
Sbjct: 461  KETFISKNIIHIIAPDELAKKPLKFKEVSNGEVIRTLRKMIREDGSTFVAQVSVKQMPN- 519

Query: 170  SRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQS 229
                  + ++G  I+       +     +    K+  L E          + ++     +
Sbjct: 520  ------NHYQG--ILQDVTAREEIAETLRESTLKYRELTERISDGFVALDKNWNFNYVNA 571

Query: 230  PP--PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ 287
                   +  +K+   + + A            LL + E+    +             + 
Sbjct: 572  KACQVIGKSYSKLIGTSAWAALPFFRKTNAYKVLLEAMETQ-EYKYIKQYREDFDKWYEY 630

Query: 288  YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANP 346
                        F+                 +      +    I ++ +     +   + 
Sbjct: 631  RMFPSAEGISVYFK--DITEIKKAEEELLHTKAKMESAIRIGKIGYWSWDYKKEIIDWSE 688

Query: 347  SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
                +        +      S +        ++ I   +    +          H I   
Sbjct: 689  LMYNIFDIDPNTPLTYETIQSRIHPDDLKKQDDLINIFISNSENNLR-----YTHRIIHR 743

Query: 407  RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
             ++   +      + N   E +   G   +  +T   K +++    +      +   G  
Sbjct: 744  DKSVHTLLVETEIEKNDKNEILKLRGTILDITETIKVKEELKESQEKFYKSFHSNLIGKV 803

Query: 467  IINREGIILSTNRAVSKLFGYPVEDILRKPF-----TVFLEQNTPSVMNHYLTEILSLDL 521
            I++    IL  NR ++ L     ++++ K         F      +       ++L+  +
Sbjct: 804  IVDENRKILEANRTIAVLLETTRKNLIGKTLIEADVLEFKSNELSADRQQLWAKLLNEGI 863

Query: 522  RQTLEKITLGSTKEEKLLS--LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579
             +  ++  + + K  K +   L I   KL     Y ++  D ++ K+ ++ L        
Sbjct: 864  LR--DEEIIYTLKSGKKIPALLSIEPLKLKNKRNYLVSAIDNTKRKEAEHLLERQNIELS 921

Query: 580  KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639
            K ++    F+   SHE+R PL +++G  ++I ++      +   +   N + +S   + D
Sbjct: 922  KTNAELDRFVYSASHELRAPLASVMGLIDIILHEDH----DEDLVFKLNMMQQSVKRLDD 977

Query: 640  IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA 699
             + D++  S  ++  + +  E ++  E ++E++  +    N K I  +           +
Sbjct: 978  FIKDIVQYS--QNKHLEIAMESINFKELINESLEGLWFLENRKHINFQLDINETQ-SFFS 1034

Query: 700  DLRSVKQIALNILSNAIHF---TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKA 756
            D + +  I  N++SNAI +   T     I I+ T   +  V + + D G+G+    L+K 
Sbjct: 1035 DKKRISIIFNNLISNAIKYHNITTENPTITITVTTKEDA-VSIEIADNGIGIPKAHLDKI 1093

Query: 757  MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             + F ++      +  GTG+GL + K ++    G+  + S P  GT   I+ P
Sbjct: 1094 FQMFYRV----SSKIMGTGIGLFVIKEVITKLNGRINVLSEPNMGTKFVILLP 1142



 Score = 90.9 bits (224), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 59/468 (12%), Positives = 146/468 (31%), Gaps = 43/468 (9%)

Query: 128 DPNNHIGDL--LKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVH 185
           D    IG L  +K+++ +          G        ++  PI++ +  F GF    I+ 
Sbjct: 130 DSIGKIGALKTIKKKDHFVSGPIRLKQGGIGF-----ISRTPIFNGD-SFEGFTS-AIIL 182

Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE 245
           +  V N  +   +     +            V    YD  S  S    ++M +    L  
Sbjct: 183 LEDVLNTAKLNSQESQFLYRLTKLNSNQTEEVYFSSYDDISTNSFSSTVKMPDGEWKLYV 242

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
           Y      ++    +  +    S L     ++ +   +   +                   
Sbjct: 243 YAKEDTSIIGILLFAFIGLFISVLSGSIAWYLLKQPKRLDRLV----------------- 285

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAG 364
                 ++   E E      V++      +    G +   N     L +Y   + ++   
Sbjct: 286 ---REKNSQLVESEEKYRSLVEQASDGIVLSDQTGKILDVNLKACELFRYTKAELLKSN- 341

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL-AMTFIPFEKANQ 423
                      S + A                 ++   ++ +  +    ++         
Sbjct: 342 ------LTDLTSKDQASDIPFRINKLLEEQTLLSQRKLLRKDGSDFYGEISAKILSNGLI 395

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
                  +     ++ ++ N  K++    +  + +E  SDGI +++     +  N    K
Sbjct: 396 QGIVRDVSARIALELKSKENAEKVKESEEKYRTAIEEASDGIFVLDEHFNFIDINIQFCK 455

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
            F  P E  + K     +  +  +       E+ + ++ +TL K+     ++      ++
Sbjct: 456 FFRSPKETFISKNIIHIIAPDELAKKPLKFKEVSNGEVIRTLRKMIR---EDGSTFVAQV 512

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD-FLA 590
            +K++P  + Y   + D++  ++    L  +     + +   SD F+A
Sbjct: 513 SVKQMPN-NHYQGILQDVTAREEIAETLRESTLKYRELTERISDGFVA 559



 Score = 88.9 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 73/562 (12%), Positives = 155/562 (27%), Gaps = 75/562 (13%)

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ--SPPPHLRMKNKVSS 242
            ++R+  +  +     ++K+  L E       +  +   I      +       K ++  
Sbjct: 280 RLDRLVREKNSQLVESEEKYRSLVEQASDGIVLSDQTGKILDVNLKACELFRYTKAELLK 339

Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302
                    D      + +    E      +             +    + +N       
Sbjct: 340 SNLTDLTSKDQASDIPFRINKLLEEQTLLSQRKLLRKDGSDFYGEISAKILSNGLIQGIV 399

Query: 303 LSHRNHPSLSAYFDE-------GENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKY 354
                  +L     E        E      +++     FV     N    N  F    + 
Sbjct: 400 RDVSARIALELKSKENAEKVKESEEKYRTAIEEASDGIFVLDEHFNFIDINIQFCKFFRS 459

Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
                      +S  +      D  A KP+         +        I+ +    +A  
Sbjct: 460 P------KETFISKNIIHIIAPDELAKKPLKFKEVSNGEV-IRTLRKMIREDGSTFVAQV 512

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII 474
            +      +   N    GI  +          +    ++   + E  SDG   +++    
Sbjct: 513 SV------KQMPNNHYQGILQDVTAREEIAETLRESTLKYRELTERISDGFVALDKNWNF 566

Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
              N    ++ G     ++       L     +     L E +     + +++       
Sbjct: 567 NYVNAKACQVIGKSYSKLIGTSAWAALPFFRKTNAYKVLLEAMETQEYKYIKQ---YRED 623

Query: 535 EEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH---------- 584
            +K    R+     P +   S+   DI+E K+ + +L H K   E               
Sbjct: 624 FDKWYEYRM----FPSAEGISVYFKDITEIKKAEEELLHTKAKMESAIRIGKIGYWSWDY 679

Query: 585 ------KSDFLARVSHEI--RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
                  S+ +  +  +I   TPLT      E I++ R  P    +  +  N    +   
Sbjct: 680 KKEIIDWSELMYNI-FDIDPNTPLTY-----ETIQS-RIHPDDLKKQDDLINIFISNSEN 732

Query: 637 VLDI----------VNDLLDISKIESGK----MNLHFEPVSLDEAVSEAISLVQLYANEK 682
            L            V+ LL  ++IE       + L    + + E +      V+    E 
Sbjct: 733 NLRYTHRIIHRDKSVHTLLVETEIEKNDKNEILKLRGTILDITETIK-----VKEELKES 787

Query: 683 RILIRTSFANNI-PRILADLRS 703
           +     SF +N+  +++ D   
Sbjct: 788 QEKFYKSFHSNLIGKVIVDENR 809


>gi|237746436|ref|ZP_04576916.1| response regulator receiver domain-containing protein [Oxalobacter
           formigenes HOxBLS]
 gi|229377787|gb|EEO27878.1| response regulator receiver domain-containing protein [Oxalobacter
           formigenes HOxBLS]
          Length = 994

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 94/390 (24%), Positives = 164/390 (42%), Gaps = 27/390 (6%)

Query: 442 INKRKMEIEVMQLCSILEATS---DGIAIIN-REGIILSTNRAVSKLFGYPVE----DIL 493
             +RK+  E  ++  ++   +   D   +++  +           +  G PVE     + 
Sbjct: 317 RQRRKLMAENREMGYVIGGITQLFDRFVLVDFEKDRYQYLAGTGPQAGGIPVEGDYSVLK 376

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDL----RQTLEKITLGSTKEEKLLSLRIIIKKLP 549
               +   +++  + M   L +          R  L         E     L +I  K  
Sbjct: 377 AFMVSAITDEDDRAHMGEALEKASIQRQMKGNRSDLRFEYRAGRGESVWDMLNVICLKRI 436

Query: 550 FSSCYSLTM--HDISEWKQEKNKLSHAKKIAEKE----SSHKSDFLARVSHEIRTPLTAI 603
                 L     D++E K E+ +   A K A       S  KSDFL+ +SH+IRTP+ AI
Sbjct: 437 DGVPVLLLFTRQDVTETKAEQLRNHIALKEAFLAAENASRAKSDFLSNMSHDIRTPMNAI 496

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +G + +       P       +    I  S   +L ++ND+LD+S+IESGK+ L  E   
Sbjct: 497 MGMTAIAAMHVNEP---AYIQDCLGKITLSSRHLLKLINDILDMSRIESGKVFLVEETFV 553

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSG 722
           L   V   +++       K   ++   AN +   ++ D   ++Q+ +NI+ NA+ FTP G
Sbjct: 554 LPTMVEALLAISLPQIRAKNQQLKVQIANIVHEEVVGDPLRLQQVCINIMGNAVKFTPEG 613

Query: 723 GQIIIST-----THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
           G I +       +            D G+GM    L++  +PF +  NS+  + EGTGLG
Sbjct: 614 GHIALQITEKPCSLHGFGCYEFVFGDDGIGMEKEFLDRIFEPFVRADNSRVRKAEGTGLG 673

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           + +A+ +V    G   ++S P KG+   + 
Sbjct: 674 MSIARNIVRMMNGDIEVWSEPGKGSRFTVT 703


>gi|225571388|ref|ZP_03780384.1| hypothetical protein CLOHYLEM_07486 [Clostridium hylemonae DSM
           15053]
 gi|225159864|gb|EEG72483.1| hypothetical protein CLOHYLEM_07486 [Clostridium hylemonae DSM
           15053]
          Length = 976

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 73/273 (26%), Positives = 137/273 (50%), Gaps = 14/273 (5%)

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE--VIK 611
             + +  ++ ++    ++ ++   AEKE+  K +FL+R+SHEIRTP+ AI+G S+   + 
Sbjct: 562 IVILILVMARYRIHAVRMQNSLAKAEKENRAKGEFLSRMSHEIRTPMNAIVGLSDLTCMM 621

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
           +               + I  S   +L +++D+LD+S+IE   M +  EP S+ + ++E 
Sbjct: 622 DDV-----PETVRVNLSKIRSSSRYLLGLISDILDMSRIEQDMMTIVREPFSIGQVMNEL 676

Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST-- 729
            S++   A  + +  +        R++ D   +KQ+ +N++SNA  FT +GG+I +    
Sbjct: 677 ESMMTAEAGRRELEFKLDLRIKSDRLIGDAVRLKQVLMNLISNAFKFTSAGGRIRVDVTE 736

Query: 730 --THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
                       RV D G+G++  + E+  + F Q+  +   + +GTGLGL ++K +V+ 
Sbjct: 737 TEASAEEAVFCFRVADNGIGISEKDQERIFESFEQV-GTNYSKSQGTGLGLAISKNIVEL 795

Query: 788 NMGKFYIFSTPAKGTLIEII--FPLYDTSHPHD 818
             GK  + S   KG+       FP   +   HD
Sbjct: 796 MGGKLELKSEIGKGSEFYFTAAFPTAASEEVHD 828


>gi|167749659|ref|ZP_02421786.1| hypothetical protein EUBSIR_00617 [Eubacterium siraeum DSM 15702]
 gi|167657412|gb|EDS01542.1| hypothetical protein EUBSIR_00617 [Eubacterium siraeum DSM 15702]
          Length = 967

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 98/368 (26%), Positives = 170/368 (46%), Gaps = 15/368 (4%)

Query: 451 VMQLCSIL-EATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKP--FTVFLEQNTP 506
             +L S+L     D   ++N  +  +   +  + ++ G    + +            +  
Sbjct: 324 REELFSVLSNNVDDIFLMLNTEDFSVGYVSPNIERILGISQSEAMSDESIIENSAVTDKN 383

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQ 566
             +   L  +   + ++   K    ++    L  +     K+     Y L M D ++ ++
Sbjct: 384 ENIRENLIRMSVGERKEWERKYVCRNSGNTCLFHITAFRNKIDGEDRYILAMSDRTKERK 443

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
               L  A   A+K ++ KS F++ +SH+IRTPL+AIIGF+ +  N+      +    EY
Sbjct: 444 TNLALHSAVNEAKKANNAKSSFISGISHDIRTPLSAIIGFASLAANEEG---NSEATKEY 500

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
            N I  SGN +L +++D+LDIS IESG++  +   V L     E  +++   A EK+  +
Sbjct: 501 INKIITSGNQLLGLISDILDISVIESGRLTFNITNVDLSRMFYEIRTVISSIAAEKQHNL 560

Query: 687 RTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-----EVILR 740
             S  N     +  D    +Q+ +N LSNAI FT +GG I ++ T T +      E  +R
Sbjct: 561 TISMHNVTHEIVRCDKHRFEQLIMNFLSNAIKFTHNGGNISLTLTETDDGKKGVPEYEIR 620

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           VRD G+GM+    +K  +P+ +          GTGLG+P++K +VDA  G   + +    
Sbjct: 621 VRDNGIGMSEEFTKKIFEPYER--EMTDKNIGGTGLGMPISKRIVDAAGGSITVNTKKGA 678

Query: 801 GTLIEIIF 808
           GT   I  
Sbjct: 679 GTEFIIKL 686


>gi|71734710|ref|YP_275861.1| response regulator, sensor histidine kinase component GacS
           [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71555263|gb|AAZ34474.1| response regulator, sensor histidine kinase component GacS
           [Pseudomonas syringae pv. phaseolicola 1448A]
          Length = 917

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 76/243 (31%), Positives = 140/243 (57%), Gaps = 8/243 (3%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  A+K A + S  KS+FLA +SHEIRTPL  I+GF+ +++     P    R  +Y   
Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSELTP----RQFDYLGT 325

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I++S + +L I+N++LD SKIE+GK+ L   P +L + + + ++++   A+ K++ + + 
Sbjct: 326 IEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSL 385

Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQI---IISTTHTSNEEVILRVRDTG 745
              + P  +  D   ++QI  N++SNAI FT  G  +   ++      + ++ + V+DTG
Sbjct: 386 VYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAMLEDETEEHAQLRISVQDTG 445

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+++ ++    + F Q  NS   +  GTGLGL ++K +++   G+  + STP +G+   
Sbjct: 446 IGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFW 505

Query: 806 IIF 808
           I  
Sbjct: 506 ISL 508


>gi|294828438|ref|NP_714175.2| histidine kinase/response regulator hybrid protein [Leptospira
           interrogans serovar Lai str. 56601]
 gi|293386292|gb|AAN51193.2| histidine kinase response regulator hybrid protein [Leptospira
           interrogans serovar Lai str. 56601]
          Length = 804

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 77/285 (27%), Positives = 129/285 (45%), Gaps = 17/285 (5%)

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
                 K+     +   I  L            I + ++ + +L  AK++AEK S  KS+
Sbjct: 371 ELEFRLKDGLQSEIHKNIVLLKKE---------IQQRRETEWELIQAKEVAEKASKVKSN 421

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           FLA +SHEIRTP+  ++G  +++   +     N    EY   +  S   +L I+ND+LD 
Sbjct: 422 FLANMSHEIRTPMNGVLGMVQLLGTTKL----NDEQKEYVEVLSVSAKSLLQIINDILDF 477

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQ 706
           SKIE+GK+ L  E  S+   + E   L+   A +K I  R      I   +  D   ++Q
Sbjct: 478 SKIEAGKVILEREVFSIRSVLDEIHDLLYPLAKQKEINFRLEGKLEIQEYVYGDPLRLRQ 537

Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSNEE---VILRVRDTGVGMTNYELEKAMKPFGQI 763
           I  N+  N I FT  G  ++  T    ++    +   V D+G+G+   + ++  + F Q 
Sbjct: 538 ILWNLAGNGIKFTSRGEVVLKVTQKNISKSSVSIEFTVMDSGIGIPLEKQKQVFEAFSQN 597

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
             S   +  G+GLGL + K +V+   G   + S   +G+      
Sbjct: 598 DTSTARKFGGSGLGLSITKQLVELQGGVLKLESKDGEGSKFTFTI 642


>gi|293410775|ref|ZP_06654351.1| hypothetical protein ECEG_01750 [Escherichia coli B354]
 gi|291471243|gb|EFF13727.1| hypothetical protein ECEG_01750 [Escherichia coli B354]
          Length = 1197

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 88/419 (21%), Positives = 162/419 (38%), Gaps = 12/419 (2%)

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
            W+  +                  +    +       ++ +  +E ++    ++ ++  +
Sbjct: 528 TWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISFRKALSDSLPN 587

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--NTPSVMNHYLTEILSLDL 521
              ++N +G ++S N A    F          P         +  S  +    E      
Sbjct: 588 PTYVVNWQGNVISHNSAFEHYFTADYYKNAMLPLENSDSPFKDVFSNAHEVTAETKENRT 647

Query: 522 RQTLEKIT-LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
             T       G  K        +        + Y     DI+E +   + L   +  A  
Sbjct: 648 IYTQVFEIDNGIEKRCINHWHTLCNLPASDHAVYICGWQDITETRDLIHALEVERNKAIN 707

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            +  KS FLA +SHEIRTP+++I+GF E++       L   + +E  +    +G  +L +
Sbjct: 708 ATVAKSQFLATMSHEIRTPISSIMGFLELLS---GSGLSKEQRVEAISLAYATGQSLLGL 764

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILA 699
           + ++LD+ KIESG   L  + V +   V          A  K I +  S       ++  
Sbjct: 765 IGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPEHYQVKI 824

Query: 700 DLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMTNYELEKA 756
           D ++ KQ+  N+LSNA+ FT  G  +I  S     +   ++   + D+G G++  E ++ 
Sbjct: 825 DPQAFKQVLSNLLSNALKFTTEGAVKITTSLGDIDDNHAVIKMTIMDSGSGLSQEEQQQL 884

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            K + Q   S   +  G+GLGL + K ++    G   + S P  GT   I  P+  T  
Sbjct: 885 FKRYSQT--SAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVEITQQ 941


>gi|218780372|ref|YP_002431690.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfatibacillum alkenivorans AK-01]
 gi|218761756|gb|ACL04222.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfatibacillum alkenivorans AK-01]
          Length = 507

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 76/414 (18%), Positives = 159/414 (38%), Gaps = 25/414 (6%)

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR--KMEIEVMQLCSILEATSDGI 465
           E    +         +  E+  Q     ++++  +  R   + +   +   I E + D I
Sbjct: 107 ERVFRINRRILADKAELQESKQQLLYLNQNLENLVAARTQALALSEHRYRRIFEVSRDLI 166

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
            + NR G IL  N A  K       +       +    + P   +  L ++        L
Sbjct: 167 LVTNRNGEILDCNPASKKALNSFGNNDAEHKPNIQRAFDNPQQWDSILQDLEERGF--VL 224

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKE 581
            +  +    +   + + I                  + DI + K  + +++ A K+A   
Sbjct: 225 NEEAVLMRHDGATIRVLISAGLDQGEDEARDTIHFLIRDIEQKKLMEARMAQADKLA--- 281

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
                +  + ++HEI  PL  I+G+++++         N R+ +    I++       IV
Sbjct: 282 --SIGELSSGIAHEINNPLGIILGYTQLLLRNEDPE--NERHAD-LRIIEKHVKSCKVIV 336

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701
            DLL  ++          EP  L E + E +  +      + + I   ++ ++P    D 
Sbjct: 337 EDLLSFAR----GGETMKEPTDLHEVIDEVLQFLHHEPGRQDLAISKEYSLDLPLAHVDK 392

Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHT-SNEEVILRVRDTGVGMTNYELEKAMKPF 760
           + ++Q+ +N++ NA H     G+I+++T          + V+D G G+    + +   PF
Sbjct: 393 KKIRQVIMNLVINASHAVEGRGKILLATDFNPERGLASIWVKDNGPGIPKQNMARIFDPF 452

Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
                +    G+GTGLGL ++  ++ ++ G   + S P +G    I  P+    
Sbjct: 453 FTTKPT----GQGTGLGLSVSYGIIKSHGGDISVESAPGEGAAFHITLPVEPPE 502


>gi|45659014|ref|YP_003100.1| histidine kinase response regulator hybrid protein [Leptospira
           interrogans serovar Copenhageni str. Fiocruz L1-130]
 gi|45602259|gb|AAS71737.1| histidine kinase response regulator hybrid protein [Leptospira
           interrogans serovar Copenhageni str. Fiocruz L1-130]
          Length = 822

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 77/285 (27%), Positives = 129/285 (45%), Gaps = 17/285 (5%)

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
                 K+     +   I  L            I + ++ + +L  AK++AEK S  KS+
Sbjct: 389 ELEFRLKDGLQSEIHKNIVLLKKE---------IQQRRETEWELIQAKEVAEKASKVKSN 439

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           FLA +SHEIRTP+  ++G  +++   +     N    EY   +  S   +L I+ND+LD 
Sbjct: 440 FLANMSHEIRTPMNGVLGMVQLLGTTKL----NDEQKEYVEVLSVSAKSLLQIINDILDF 495

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQ 706
           SKIE+GK+ L  E  S+   + E   L+   A +K I  R      I   +  D   ++Q
Sbjct: 496 SKIEAGKVILEREVFSIRSVLDEIHDLLYPLAKQKEINFRLEGKLEIQEYVYGDPLRLRQ 555

Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSNEE---VILRVRDTGVGMTNYELEKAMKPFGQI 763
           I  N+  N I FT  G  ++  T    ++    +   V D+G+G+   + ++  + F Q 
Sbjct: 556 ILWNLAGNGIKFTSRGEVVLKVTQKNISKSSVSIEFTVMDSGIGIPLEKQKQVFEAFSQN 615

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
             S   +  G+GLGL + K +V+   G   + S   +G+      
Sbjct: 616 DTSTARKFGGSGLGLSITKQLVELQGGVLKLESKDGEGSKFTFTI 660


>gi|50120050|ref|YP_049217.1| phosphate regulon sensor protein [Pectobacterium atrosepticum
           SCRI1043]
 gi|49610576|emb|CAG74021.1| phosphate regulon histidine kinase [Pectobacterium atrosepticum
           SCRI1043]
          Length = 440

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 63/357 (17%), Positives = 125/357 (35%), Gaps = 33/357 (9%)

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
           +  S  E+  D + I   EG I   N     L  +   +   +     L     +     
Sbjct: 99  RFRSGAESLPDAVVITTEEGTIFWCNHLAQHLLNFRWPEDNGQNILNLLRYPEFTNYM-- 156

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572
                     Q   +           +  R++           + + DI++  Q +    
Sbjct: 157 --------KGQDFSRPLTLQLNNSHHVEFRVMPY---SEGQLLMVVRDITQMHQLEG--- 202

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
                       + +F A VSHE+RTPLT + G+ E+++          +     + +  
Sbjct: 203 -----------ARRNFFANVSHELRTPLTVLQGYLEMMQEDTLDAALRGKA---LSTMQE 248

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
               +  +V  LL +S+IE+       E V +   +       Q  +  +   I      
Sbjct: 249 QTRRMDGLVKQLLTLSRIEAATAIDLNEKVDIPLMLRVLQREAQTLSQGRH-EIVFRVNE 307

Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752
           N+ R+  +   ++    N++ NA++ TP G +I +            +V D G G+    
Sbjct: 308 NL-RVFGNEEQLRSAVSNLVYNAVNHTPEGTRIEVCWQKIPQG-AQFQVSDNGPGIAAEH 365

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           L +  + F ++  ++  +  G+GLGL + K  +  +  +  I S    G+      P
Sbjct: 366 LPRLTERFYRVDKARSRQTGGSGLGLAIVKHALSHHDSRLEIMSEDGLGSRFVFTLP 422


>gi|37677080|ref|NP_937476.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
 gi|37201625|dbj|BAC97446.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
          Length = 720

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 83/257 (32%), Positives = 126/257 (49%), Gaps = 9/257 (3%)

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           +Q+   +  AK+ AE  +  KS FLA +SHE+RTPL AIIG    + +       + +  
Sbjct: 219 QQQSLDMQEAKRAAEASAETKSKFLANISHEVRTPLNAIIG----LSDTDHYLNASEQIR 274

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           EY + I RSG  +L ++ND+LDISKI+SGK+ L     SL + V +   L         +
Sbjct: 275 EYIDLIHRSGKHLLALMNDILDISKIDSGKLTLEQVEFSLKDIVDDTRVLFHERTQTPGV 334

Query: 685 LIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EVILR 740
                   +   I   D   + QI  N+ SNAI FT  G QI ++ T  +      + + 
Sbjct: 335 ESFIITPQDCDMIFYGDPLRLFQIISNLCSNAIKFTHEG-QIKVAFTVQNRGPNSVLQIC 393

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V DTG+G++  +L+K    F Q  +S   +  GTGLGL + + + +   G   I S   +
Sbjct: 394 VSDTGIGISEAQLQKVFDEFVQADDSTTRKYGGTGLGLAICQKLTNLMQGTLRIESELNR 453

Query: 801 GTLIEIIFPLYDTSHPH 817
           GT + +   L     PH
Sbjct: 454 GTHVTLSLTLPLLHAPH 470


>gi|134299174|ref|YP_001112670.1| sensory histidine kinase AtoS [Desulfotomaculum reducens MI-1]
 gi|134051874|gb|ABO49845.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfotomaculum reducens MI-1]
          Length = 614

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 90/372 (24%), Positives = 158/372 (42%), Gaps = 34/372 (9%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
             ++         I+ +   GI  ++ EG I+S N    K+F    ED+L K F      
Sbjct: 270 AARLVNAQNYNEIIMASIDAGIVAVDMEGKIVSVNSTARKIFRLE-EDVLGKHFHKVFSN 328

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMH 559
           N    + + LT  L         K  +      + L L      L           L+  
Sbjct: 329 N--QDLINLLTNCLKGQET----KEYITKHSSPQELQLMANTSILFDPHKKVVGAILSCR 382

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           D++   + + ++   +++A          +  V+HEI+ PLT+I G+ +     +     
Sbjct: 383 DVTARMRLEEQMRRQERLA-----ALGKLVTGVAHEIKNPLTSISGYIQFWLKSKSPTTK 437

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
           +       N I R    +  IVN LL  S+     M+     VSL+E V   ++  +   
Sbjct: 438 S------LNTIYREVRRLDSIVNKLLFFSRPTHAVMS----KVSLNEFVDRVLNFFK-ET 486

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-EVI 738
           +   I        N+P++  D   V+Q+ +NI+ N +   P GG+I + T  + ++  + 
Sbjct: 487 HADNICFTICCEENLPKVYIDPDQVEQVLMNIIYNGVQAMPEGGEISVETGSSKSDTMIY 546

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           + +RDTG G+ N  LEK   PF         R +GTGLGL +A  ++ ++ G+  I S  
Sbjct: 547 VEIRDTGFGIENELLEKIFDPFFTT------RAKGTGLGLTIADEIIRSHGGRIEIKSQV 600

Query: 799 AKGTLIEIIFPL 810
             GT++ ++FP+
Sbjct: 601 GVGTIVRVLFPI 612


>gi|116622312|ref|YP_824468.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116225474|gb|ABJ84183.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 781

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 90/623 (14%), Positives = 183/623 (29%), Gaps = 58/623 (9%)

Query: 220 EKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTIN 279
             +   +           +               ++ E +        +           
Sbjct: 50  HDFRYLAVNPAFERHTGLSAAQVTGRTILELFPEIEREWFEQCGKTALTGVSARFEAWFG 109

Query: 280 LNQYTKKQY-FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH 338
           L     +   F T        F  +S                     ++  P   ++   
Sbjct: 110 LLGRWFEVSCFQTTPGRFGALFTDISKFKREGTE---YRMAGELQAILEATPAAIWIAHD 166

Query: 339 G--NLFYANPSF------LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390
                   N                S   +     +S  +    +       P  +  + 
Sbjct: 167 PECRRITGNAYADEVIMRAERGGNISRSALPGDEAVSYRVYRNGVELAPGELPSQVAAAT 226

Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450
                   +   + +N    +  T       +             +    +  +  +   
Sbjct: 227 GQ--PVKEQGFELVFNDGRRVHTTLSAVPLFDADGRVRGSVTAGIDITRLKQAEETLRAS 284

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
             +   + E++ DGI + + +G I + N A  ++ G   E+I++       + + P +  
Sbjct: 285 EEKYRLLFESSIDGIILTSPDGYISAANSAACRILGRTEEEIIQAGREGITDTSDPRLA- 343

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF---SSCYSLTMHDISEWKQE 567
                +   D             K+  L    I           +  S+   DI+E K+ 
Sbjct: 344 ---AALEERDRTGRFHGELTMKHKDGSLFPAEISTVLYGGKDSETRSSVLFRDITERKRA 400

Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
           + +L   +K+              ++H+    L ++IG +  +  +R         +E  
Sbjct: 401 EERLREVQKL-----ESLGLLAGGIAHDFNNLLVSVIGNA-SLAQERLPAGHP--LVELL 452

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
             + +SG+    + N +L  S    GK     E ++L   +++   +VQ   +  RI I 
Sbjct: 453 ERVVQSGHQAAHLTNQMLAYS----GKGKFLVETLNLSALIADMGFVVQESISP-RIAIH 507

Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHF-TPSGGQIIISTTHT-------------- 732
                N+P I AD   +KQ+ +N+ +NA        G II+ T                 
Sbjct: 508 FQLEENLPPIEADRGQMKQVFMNLATNAADAIGSRDGLIIVKTGIRNVDGQFIQRRQEAR 567

Query: 733 ---SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
                  V L V D+G GM      +   PF         +  G GLGL     +V  + 
Sbjct: 568 DLMPGRYVYLDVSDSGCGMDEATRARIFDPFY------STKFMGRGLGLAAVGGIVRGHK 621

Query: 790 GKFYIFSTPAKGTLIEIIFPLYD 812
           G   + S P +G+   ++ P  +
Sbjct: 622 GTVTVSSQPGQGSCFTVLLPATE 644



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 48/514 (9%), Positives = 116/514 (22%), Gaps = 40/514 (7%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID-----PNNHIGDLLKRQNTWYGK 146
                 ++    +  G  A ++ G  + ++   +  +         +  +  R   W+G 
Sbjct: 51  DFRYLAVNPAFERHTGLSAAQVTGRTILELFPEIEREWFEQCGKTALTGVSARFEAWFGL 110

Query: 147 TTLWPIEGTNLYVPIDLAAL--PIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
              W         P    AL   I    RE + +R  G +                 +  
Sbjct: 111 LGRWFEVSCFQTTPGRFGALFTDISKFKREGTEYRMAGELQAILEATPAAIWIAHDPECR 170

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
                       +  E+    S+ + P    +  +V       A  +   +         
Sbjct: 171 RITGNAYADEVIMRAERGGNISRSALPGDEAVSYRVYRNGVELAPGELPSQVAAATGQPV 230

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
           +E       +         +    F             +               E     
Sbjct: 231 KEQGFELVFNDGRRVHTTLSAVPLFDADGRVRGSVTAGIDITRLKQAEETLRASEEKYRL 290

Query: 325 TVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
             +       + S  G +  AN +   +      + I+             ++D +  + 
Sbjct: 291 LFESSIDGIILTSPDGYISAANSAACRILGRTEEEIIQA--------GREGITDTSDPRL 342

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
                           L     +     A                  + +  +  + +  
Sbjct: 343 AAALEERDRTGRFHGELTMKHKDGSLFPAEISTVLYGGKDSE--TRSSVLFRDITERKRA 400

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
           + ++  EV +L S+      G    +   +++S               I           
Sbjct: 401 EERLR-EVQKLESL--GLLAGGIAHDFNNLLVSV--------------IGNASLAQERLP 443

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
               ++      + S      L    L  + + K L   + +  L     +      IS 
Sbjct: 444 AGHPLVELLERVVQSGHQAAHLTNQMLAYSGKGKFLVETLNLSALIADMGFV-VQESISP 502

Query: 564 WK----QEKNKLSHAKKIAEKESSHKSDFLARVS 593
                 Q +  L   +    +      +     +
Sbjct: 503 RIAIHFQLEENLPPIEADRGQMKQVFMNLATNAA 536



 Score = 45.4 bits (106), Expect = 0.037,   Method: Composition-based stats.
 Identities = 14/122 (11%), Positives = 42/122 (34%), Gaps = 16/122 (13%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMI--GMRLCDVSDILHIDPNNHIGDLLKRQN---TW 143
               GY+   +    + +G    ++I  G       + +    +  +   L+ ++    +
Sbjct: 302 TSPDGYISAANSAACRILGRTEEEIIQAGR------EGITDTSDPRLAAALEERDRTGRF 355

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
           +G+ T+   +G+    P +++ +    ++ E    R   +              + + K 
Sbjct: 356 HGELTMKHKDGSLF--PAEISTVLYGGKDSE---TRSSVLFRDITERKRAEERLREVQKL 410

Query: 204 FS 205
            S
Sbjct: 411 ES 412


>gi|327481366|gb|AEA84676.1| sensor histidine kinase/response regulator GacS [Pseudomonas
           stutzeri DSM 4166]
          Length = 908

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 78/244 (31%), Positives = 140/244 (57%), Gaps = 10/244 (4%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  A+K A + S  KS+FLA +SHEIRTPL  I+GF+++++     P    R  +Y   
Sbjct: 259 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTQLLQKSDLTP----RQQDYLGT 314

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I++S + +L I+N++LD SKIE+GK+ L   P +L + + + ++++   A+ K++ + + 
Sbjct: 315 IEKSADSLLGIINEILDFSKIEAGKLVLDTIPFNLRDLIEDTLTILAPAAHTKQLELVSL 374

Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDT 744
              + P  ++ D   +KQ+  N++SNAI FT  G  I +      +     ++ + V+DT
Sbjct: 375 VYRDTPLSLVGDPLRLKQVLTNLISNAIKFTNEG-TIAVRAMVEDDNAERAQLRISVQDT 433

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G+T+ +L    + F Q  NS   +  GTGLGL ++K +++   G+  + S P +G+  
Sbjct: 434 GIGLTDQDLRALFQAFSQADNSMSRQPGGTGLGLVISKRLIEQMGGEIGVDSIPDEGSEF 493

Query: 805 EIIF 808
            I  
Sbjct: 494 WISL 497


>gi|239609727|gb|EEQ86714.1| DRK1 histidine kinase [Ajellomyces dermatitidis ER-3]
          Length = 1287

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 76/255 (29%), Positives = 130/255 (50%), Gaps = 12/255 (4%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           +S  +    + + A++ AE  +  KS+FLA +SHEIRTP+  IIG +++  +        
Sbjct: 683 VSNLRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDD---LK 739

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
           P   E  N +    N +L I++D+LDISKIE+ +M +   P S+   V  A+  + + AN
Sbjct: 740 PYPREMLNVVHSLANSLLTIIDDILDISKIEANRMVIEKIPFSMRGTVFNALKTLAVKAN 799

Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV-- 737
           EK + +     +++P  +  D   ++QI LN++ NAI FT  G ++ ++ + +  EE   
Sbjct: 800 EKFLSLAYQVDSSVPDYVTGDPFRLRQIILNLVGNAIKFTEHG-EVKLAISRSDREECKD 858

Query: 738 -----ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
                   V DTG+G+   +L+     F Q   S   +  GTGLGL ++K +V+   G  
Sbjct: 859 NEYAFEFSVSDTGIGIEEDKLDLIFDTFQQADGSTTRKFGGTGLGLSISKRLVNLMGGDV 918

Query: 793 YIFSTPAKGTLIEII 807
           ++ S    G+     
Sbjct: 919 WVTSEYGLGSSFHFT 933


>gi|121535650|ref|ZP_01667455.1| integral membrane sensor signal transduction histidine kinase
           [Thermosinus carboxydivorans Nor1]
 gi|121305754|gb|EAX46691.1| integral membrane sensor signal transduction histidine kinase
           [Thermosinus carboxydivorans Nor1]
          Length = 425

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 69/353 (19%), Positives = 145/353 (41%), Gaps = 14/353 (3%)

Query: 465 IAIINREGIILSTNRA----VSKLFGYPVEDILRKPFTVFLEQNTPSVM---NHYLTEIL 517
           I + + +G + S+  +    + +L     +    K     ++ +   ++     Y   +L
Sbjct: 74  ILVRDSQGRVTSSFPSEVAELERLAALASQVDAGKVHISEVDSHAYRLISLPYRYEENVL 133

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI 577
             +    + K  +  +  +  ++L   +  +  S      +  I        +     + 
Sbjct: 134 QTERGPIVVKDVIAVSIVDSEVALLRNLFMIIVSGLVIGMLIIIMAGYYLARRAMVPIQA 193

Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
           A ++      F+A  SHE+RTPL  I   +E++       + +         I R    +
Sbjct: 194 AWEKQQ---QFVADASHELRTPLAVIKSNAELMLRHPDHTIEDESIR--VTNIVREVRRM 248

Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697
             +V DLL +++ ++ +  L    VSL E V       +  A  +   +  +    +  +
Sbjct: 249 TRLVADLLTLARADANQSELQLGAVSLSELVDAVSEQFKPLAQLEGHTLTVAVYEQL-EL 307

Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAM 757
           + D   + Q+ + +L NA+ +TP  G I+I T       ++L V D+G G+   +L +  
Sbjct: 308 VGDRERLYQLLVILLDNAVKYTPPPGHILI-TGVRQGSHILLTVEDSGQGIPPEDLPRVF 366

Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             F +   ++     GTGLGL +AK +V+ + GK ++ S    GT   ++ P+
Sbjct: 367 DRFYRGDKARSREKGGTGLGLAIAKWIVEKHGGKIWVESKVGVGTKFSVLLPV 419


>gi|119485730|ref|ZP_01620005.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
 gi|119457055|gb|EAW38182.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
          Length = 1225

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 71/253 (28%), Positives = 125/253 (49%), Gaps = 21/253 (8%)

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
           K+ A+  +  KS+FLA +SHE+RTPL AI+GF++++    +       + +Y   I R+G
Sbjct: 735 KEAADAANLAKSEFLASMSHELRTPLNAILGFAQLM---NYDSSIKVEHHQYLEIISRAG 791

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
             +L+++ND+L++SKIE+G++ L  +   L   +     ++ L A  K +L+       +
Sbjct: 792 EHLLNLINDILEMSKIEAGRVTLTEDDFDLLHLLENLEKMLCLKAQSKGLLLTFELDETL 851

Query: 695 P-RILADLRSVKQIALNILSNAIHFTPSGGQIII---------------STTHTSNEEVI 738
           P  +  D + ++Q+ +N+L NA  FT SG  + +               S        + 
Sbjct: 852 PQWVRGDEKKLRQVLINLLGNATKFTESG-CVTLRSFRVNQAKVRETENSLIKNDALRIR 910

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
             V DTG+G+   EL++  + F Q        GEGTGLGL +++  V    G+  + S  
Sbjct: 911 FEVADTGLGIAENELKRLFQAFSQTTTGL-KSGEGTGLGLSISQQFVQLMGGEITVKSQV 969

Query: 799 AKGTLIEIIFPLY 811
             G+      P+ 
Sbjct: 970 NVGSTFAFEIPMS 982



 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 45/305 (14%), Positives = 87/305 (28%), Gaps = 13/305 (4%)

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGG 365
            H        E E      + +  +   + ++   +  +N S   L K KS  +     G
Sbjct: 252 AHQLREKALAESEQRFQTLIREMQVGVLLLNNRAEILISNQSAQTLLKLKSNTETPQIFG 311

Query: 366 LSTLLDAPKLSDNNAIK-PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
               L     SD N  K PV    + R  +          +       +      +  + 
Sbjct: 312 QDWYLMQEDGSDYNPQKLPVQFAITQRQPVRNIIIGIKNSYPNAQCRWLLVNATPQLAKN 371

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSK 483
                      +    +  +  +     +    +E  +DGI   +   G     +     
Sbjct: 372 GSVERVICTVSDISQQKQTEAALRDSEERFALAVEGANDGIWDWDIPTGK-TYFSSRWKM 430

Query: 484 LFGYPVEDILRK--PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
           + GY  E++      F   L       + + L   L+ ++    E      TK+  +  +
Sbjct: 431 MLGYGEEELPNHLESFKKILYSEDSERVFNILERYLNQEIP-YYEVEFRSVTKQGNIRWI 489

Query: 542 RIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
                 L  S         +  DI+E KQ +  L  + K               +  E++
Sbjct: 490 LSRGVALWDSKNKAYRMVGSNTDITERKQVEQALQESAKRERSIVRVMQRMRETL--ELK 547

Query: 598 TPLTA 602
           T   A
Sbjct: 548 TIFNA 552



 Score = 57.3 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 20/163 (12%), Positives = 54/163 (33%), Gaps = 10/163 (6%)

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490
              +      ++ ++ +     +  +++     G+ ++N    IL +N++   L      
Sbjct: 244 LFFDRRLNAHQLREKALAESEQRFQTLIREMQVGVLLLNNRAEILISNQSAQTLLKLKSN 303

Query: 491 DILRKPF---TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST---KEEKLLSLRII 544
               + F      ++++        L    ++  RQ +  I +G        +   L + 
Sbjct: 304 TETPQIFGQDWYLMQEDGSDYNPQKLPVQFAITQRQPVRNIIIGIKNSYPNAQCRWLLVN 363

Query: 545 IKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
                  +        T+ DIS+ KQ +  L  +++       
Sbjct: 364 ATPQLAKNGSVERVICTVSDISQQKQTEAALRDSEERFALAVE 406


>gi|75675222|ref|YP_317643.1| Signal transduction histidine kinase [Nitrobacter winogradskyi
           Nb-255]
 gi|74420092|gb|ABA04291.1| PAS/PAC sensor signal transduction histidine kinase [Nitrobacter
           winogradskyi Nb-255]
          Length = 511

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 92/507 (18%), Positives = 188/507 (37%), Gaps = 31/507 (6%)

Query: 318 GENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
            +      +DK  +  +         + +     L         E       L  +    
Sbjct: 14  RDEDLQRGIDKSGVGIWDLDLSTRKLFWSNPARRLFGVP-----ENIPVSYDLFLSLLRR 68

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           D+ A     + RS  T      + H I    E S  +        N+       +G+  +
Sbjct: 69  DDRARTKQAIQRSITTGCRFDLQYH-IHGTLEGSRWIRARGGLVFNEDGTPQRLSGVILD 127

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
               +  +  +      L SIL+   D + +I+  GI+   + A  +LFGY   + + + 
Sbjct: 128 IDHQKSIEEALIAREDHLRSILDTIPDAMIVIDDRGIMQHFSTAAERLFGYSEHEAIGQN 187

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQT--LEKITLGSTKEEKLLSLRIIIKKLPFSS-- 552
             + + +   S  + YL    S   R+   + ++  G  ++     L + + ++      
Sbjct: 188 VRILMPEPDSSRHDGYLARHQSTGERRIIGIGRVVTGKRRDGSTFPLHLSVGEMHSGGKR 247

Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESS--HKSDFLARVSHEIRTPLTAIIGFSEVI 610
            ++  + D++E +Q + KL   +      S      +  + ++HE+  PLTAI  + +  
Sbjct: 248 HFTGFVRDLTEHQQTQVKLQELQSELFHVSRLSAMGEMASALAHELNQPLTAISNYIKG- 306

Query: 611 KNQRFGPLGNPRYIE---YANYIDRSGNLVLDIVNDLLDI-SKIESGKMNLHFEPVSLDE 666
             +      +P   +     +           I+  L D  S+ ES          SL +
Sbjct: 307 SRRLLAASTDPDIAKIEMALDRAADQAIRAGQIIRRLRDFVSRRES-----EKRVESLSK 361

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT--PSGGQ 724
            + EA  L    A E+ I++ T    +  R+L D   V+Q+ +N+  NA+         +
Sbjct: 362 LMEEASVLGLAGAREQNIILLTDLNADCDRVLVDRVQVQQVLVNLFRNALEAMAKSPKRE 421

Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
           +  S+T   +  V L + DTG G +          F     S      G G+GL +++++
Sbjct: 422 LTASSTKAPDNMVELSISDTGHGFSEEAAANLFDTFFTTKES------GMGVGLSISRSI 475

Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPLY 811
           V+A+ G+ +  +  + G  + +  P+ 
Sbjct: 476 VEAHGGRMWAETNDSGGATMRLTLPIA 502



 Score = 58.1 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 33/305 (10%), Positives = 81/305 (26%), Gaps = 19/305 (6%)

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES----FEY 302
               D     +      +       Q   H         +   G + N            
Sbjct: 66  LRRDDRARTKQAIQRSITTGCRFDLQYHIHGTLEGSRWIRARGGLVFNEDGTPQRLSGVI 125

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIE 361
           L   +  S+       E+     +D  P     +   G + + + +   L  Y   + I 
Sbjct: 126 LDIDHQKSIEEALIAREDHLRSILDTIPDAMIVIDDRGIMQHFSTAAERLFGYSEHEAIG 185

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
               +  L+  P  S ++          +R  I     +   + +               
Sbjct: 186 QNVRI--LMPEPDSSRHDGYLARHQSTGERRIIGIGRVVTGKRRDGSTF---PLHLSVGE 240

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI--LEATSDGIAIINREGIILSTNR 479
                     G   +  + +  + K++    +L  +  L A  +  + +  E      N+
Sbjct: 241 MHSGGKRHFTGFVRDLTEHQQTQVKLQELQSELFHVSRLSAMGEMASALAHE-----LNQ 295

Query: 480 AVSKLFGY--PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
            ++ +  Y      +L       + +   ++       I +  + + L         E++
Sbjct: 296 PLTAISNYIKGSRRLLAASTDPDIAKIEMALDRAADQAIRAGQIIRRLRDFVSRRESEKR 355

Query: 538 LLSLR 542
           + SL 
Sbjct: 356 VESLS 360



 Score = 39.6 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 25/248 (10%), Positives = 63/248 (25%), Gaps = 12/248 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY---- 144
           ID  G ++  S    +  G    + IG  +  +        ++      +          
Sbjct: 159 IDDRGIMQHFSTAAERLFGYSEHEAIGQNVRILMPEPDSSRHDGYLARHQSTGERRIIGI 218

Query: 145 -GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
               T    +G+   + + +         R F+GF     V         +   + L  +
Sbjct: 219 GRVVTGKRRDGSTFPLHLSV-GEMHSGGKRHFTGF-----VRDLTEHQQTQVKLQELQSE 272

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
             H+  +      +        +Q        +K     L          ++        
Sbjct: 273 LFHVSRL-SAMGEMASALAHELNQPLTAISNYIKGSRRLLAASTDPDIAKIEMALDRAAD 331

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
               +             + ++K+     +   + S   L+     ++    D   +   
Sbjct: 332 QAIRAGQIIRRLRDFVSRRESEKRVESLSKLMEEASVLGLAGAREQNIILLTDLNADCDR 391

Query: 324 ETVDKCPI 331
             VD+  +
Sbjct: 392 VLVDRVQV 399


>gi|193216183|ref|YP_001997382.1| PAS/PAC sensor signal transduction histidine kinase [Chloroherpeton
            thalassium ATCC 35110]
 gi|193089660|gb|ACF14935.1| PAS/PAC sensor signal transduction histidine kinase [Chloroherpeton
            thalassium ATCC 35110]
          Length = 1492

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 78/380 (20%), Positives = 160/380 (42%), Gaps = 25/380 (6%)

Query: 447  MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
            +     +  ++ E    GI +I+ EG I   N  + K+  Y  +D+L K F  F+  +  
Sbjct: 1122 LARWDAKFRNLAENVEYGIMLIDPEGQIEYLNSFMKKVLNYRDKDMLGKSFFDFVHPDYV 1181

Query: 507  SVMNHYLTEIL-------SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS------SC 553
            +         L       + +  +  E     ++KE     +    + +  +        
Sbjct: 1182 AESKTQFDHALLRDNDFNAEEPSREYELELYAASKESIPFQVTTTPQYIVSAAGNLALEG 1241

Query: 554  YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
                + D+   +         ++  ++  + +++F A V H+++ PL+AI G+S+++KN 
Sbjct: 1242 VFSILVDLRRIRAL-------QRKQKELDTIRNNFFAMVVHDMKVPLSAIYGYSDMLKNF 1294

Query: 614  RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
                +    + E  + I  S   +  +V ++LD SK ES  ++L+ +  SL   +   + 
Sbjct: 1295 NPQTVDPEYFEEIMSRIHLSAGNINRLVQEILDFSKYESKMVSLNKQRHSLVLCIDLVLD 1354

Query: 674  LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT- 732
              Q    +K+I +R +  ++      D   + ++  N+ SNAI F+     I +   H  
Sbjct: 1355 QSQHDLQKKQITVRRNVGSSDFYFSFDFDKLVRVFTNLFSNAIKFSKPESTIDLIIRHEV 1414

Query: 733  --SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
              +    ++ ++D G G+   E+E     + Q  +    R  GTGLGL + K +V+ + G
Sbjct: 1415 YDNKPYALVSIKDEGEGIPEEEVELIFDAYKQAQSKHGSR--GTGLGLSITKQIVELHGG 1472

Query: 791  KFYIFSTPAKGTLIEIIFPL 810
            + +  S    GT      P+
Sbjct: 1473 EIWAESELDVGTTFHFYLPM 1492



 Score = 44.6 bits (104), Expect = 0.076,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 8/121 (6%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH-IDPNNHIGDLLKRQNTWYGKT 147
            ID  G ++ ++  + K +      M+G    D     +  +        L R N +  + 
Sbjct: 1143 IDPEGQIEYLNSFMKKVLNYRDKDMLGKSFFDFVHPDYVAESKTQFDHALLRDNDFNAEE 1202

Query: 148  TLWPIE-----GTNLYVPIDLAALPIY--SRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
                 E      +   +P  +   P Y  S     +    F I+   R     +   K L
Sbjct: 1203 PSREYELELYAASKESIPFQVTTTPQYIVSAAGNLALEGVFSILVDLRRIRALQRKQKEL 1262

Query: 201  D 201
            D
Sbjct: 1263 D 1263


>gi|257485912|ref|ZP_05639953.1| response regulator, sensor histidine kinase component GacS
           [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|331013483|gb|EGH93539.1| response regulator, sensor histidine kinase component GacS
           [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 917

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 76/243 (31%), Positives = 140/243 (57%), Gaps = 8/243 (3%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  A+K A + S  KS+FLA +SHEIRTPL  I+GF+ +++     P    R  +Y   
Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSELTP----RQFDYLGT 325

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I++S + +L I+N++LD SKIE+GK+ L   P +L + + + ++++   A+ K++ + + 
Sbjct: 326 IEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSL 385

Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQI---IISTTHTSNEEVILRVRDTG 745
              + P  +  D   ++QI  N++SNAI FT  G  +   ++      + ++ + V+DTG
Sbjct: 386 VYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAMLEDETEEHAQLRISVQDTG 445

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+++ ++    + F Q  NS   +  GTGLGL ++K +++   G+  + STP +G+   
Sbjct: 446 IGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFW 505

Query: 806 IIF 808
           I  
Sbjct: 506 ISL 508


>gi|319762875|ref|YP_004126812.1| pas sensor protein [Alicycliphilus denitrificans BC]
 gi|317117436|gb|ADU99924.1| PAS sensor protein [Alicycliphilus denitrificans BC]
          Length = 722

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 104/581 (17%), Positives = 197/581 (33%), Gaps = 49/581 (8%)

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS-AYFDEG 318
                     P   +                 +        E  +       S A  +  
Sbjct: 11  RDEQPASDPSPAPVEPSERRGPGRASGAIAELIAELRASQAELEAQNKVLRYSQAAAESA 70

Query: 319 ENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDI----------EIAGGLS 367
                      P+   V      +  AN       +    D              A  + 
Sbjct: 71  SERFEALFSNVPLSLMVLDEHDVVVQANSMAQRSFQPSERDRPLTALMPFVSPRHAARVR 130

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
               A   S       V+    +   I     +  I+ + ++   +T       +Q P  
Sbjct: 131 ATFAAALESGTAEANEVVFEIDEHRHITGDLHIARIEAHTDDETPLTQFLCAVIDQGPLL 190

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
             +  ++    + +    ++     +L +++ +  D I  +++   I   N   + LF  
Sbjct: 191 AERQALQRSAQELQERNAQLHASERRLEAVINSALDAIICVDQRERITVFNPTAAMLFQC 250

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
              D L  P + FL Q    +    LT   +L             T   + L++ I +  
Sbjct: 251 ATSDALGSPLSRFLPQAQQVMAFAQLTTQAALG-------EMTALTASGRELAVEISVSF 303

Query: 548 LPFSSCYSLTM--HDISEWKQEKNKLSHAKKIAEKE--SSHKSDFLARVSHEIRTPLTAI 603
              +   + T+   D++  K+E+ + S  +    +             ++H+    L AI
Sbjct: 304 ERHAEGETTTVFARDLTGRKREEARRSALEAQLRESHKMQAVGTMAGGIAHDFNNILHAI 363

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +G  E    +  G  G P   E    ID++G    D+V  +L  S+ E+         V+
Sbjct: 364 LGNVE--LAKADGTPGTP-LHESLLEIDKAGRRARDLVRQILTFSRNEA----PQRSAVA 416

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF-TPSG 722
           L E   +   L+++    + I +      ++P +LAD   V+Q  LN+ +NA+H    + 
Sbjct: 417 LAEVAHDTERLLRVTLPPE-IELSMHLPQDLPPLLADPTQVEQALLNLCTNAMHAIGSAR 475

Query: 723 GQIII-------------STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
           G+I +             S    + + V LRV+D G GM    L +  +PF         
Sbjct: 476 GRIQVDAALVQPEQRLRESLGMAAGDYVALRVQDNGPGMDEATLSRIFEPFFTTKP---- 531

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            G+GTGLGL +   ++  + G   + STP +G+   + FP+
Sbjct: 532 VGQGTGLGLAVVHGVMRTHGGGVDVHSTPGQGSRFTLYFPV 572



 Score = 39.6 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 28/302 (9%), Positives = 64/302 (21%), Gaps = 14/302 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D    +   +              +G  L                 L        G+ T
Sbjct: 231 VDQRERITVFNPTAAMLFQCATSDALGSPLSRFLPQ--AQQVMAFAQL--TTQAALGEMT 286

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                G  L V I ++        R   G                 A    L+ +    H
Sbjct: 287 ALTASGRELAVEISVSF------ERHAEGETTTVFARDLTGRKREEARRSALEAQLRESH 340

Query: 209 EIKKGHSSVEKEKYDIFSQQSP---PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
           +++   +      +D  +          L   +       + +  +      +   L  +
Sbjct: 341 KMQAVGTMAGGIAHDFNNILHAILGNVELAKADGTPGTPLHESLLEIDKAGRRARDLVRQ 400

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
             +    E      +           L   +      LS      L     +   +    
Sbjct: 401 ILTFSRNEAPQRSAVALAEVAHDTERLLRVTLPPEIELSMHLPQDLPPLLADPTQVEQAL 460

Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIE-IAGGLSTLLDAPKLSDNNAIKPV 384
           ++ C                 + L+  + +  + +   AG    L         +     
Sbjct: 461 LNLCTNAMHAIGSARGRIQVDAALVQPEQRLRESLGMAAGDYVALRVQDNGPGMDEATLS 520

Query: 385 ML 386
            +
Sbjct: 521 RI 522


>gi|119510843|ref|ZP_01629968.1| two-component sensor histidine kinase [Nodularia spumigena CCY9414]
 gi|119464522|gb|EAW45434.1| two-component sensor histidine kinase [Nodularia spumigena CCY9414]
          Length = 648

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 79/258 (30%), Positives = 131/258 (50%), Gaps = 5/258 (1%)

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
                +   K    +L  A K A+  +  KS FLA  SHE+R PL  II    V+     
Sbjct: 358 AIDQMVERLKAWAEELEIAWKEAKTANQIKSQFLATTSHELRNPLNVIINCVRVVHEGLC 417

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
                   IE+    D +   +L I+N+LLDISKIE+GK+++   P+ L + + E I+L 
Sbjct: 418 D--NREEEIEFLKRADDTAIHLLGIINELLDISKIEAGKLSVVKVPIDLRQILLEVINLQ 475

Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
            +    K + ++T    ++  + AD   +KQ+ +NI+ NA  FT  G  I I+T  +   
Sbjct: 476 SVNVQNKGLQLKTDLGTDLIPVEADAAKLKQVLINIIGNATKFTDEGS-IRIAT-ISHKF 533

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
           +VI+ + DTG+G+   +  K  +PF  +      + EGTGLGL +++ +++   G   + 
Sbjct: 534 QVIVSITDTGLGIEPDQQHKLFRPFVMLDGGATRKVEGTGLGLAISRNLIELMGGTITLE 593

Query: 796 ST-PAKGTLIEIIFPLYD 812
           S    +GT ++I  P+ D
Sbjct: 594 SAGINQGTTVKITLPMID 611


>gi|319786002|ref|YP_004145477.1| multi-sensor hybrid histidine kinase [Pseudoxanthomonas suwonensis
           11-1]
 gi|317464514|gb|ADV26246.1| multi-sensor hybrid histidine kinase [Pseudoxanthomonas suwonensis
           11-1]
          Length = 964

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 72/256 (28%), Positives = 121/256 (47%), Gaps = 8/256 (3%)

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            D+    + + +L  AK+ AE  +  K +FLA +SHEIRTPL  II   ++I +    P 
Sbjct: 83  RDLQRHDKLEQQLMQAKQAAEAAALAKGEFLATMSHEIRTPLNGIIPMLDLIGHGTLAP- 141

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
                 +  +    S   +L IV+D+LD SK+E+ ++ L     +L E +   + L++  
Sbjct: 142 ---DQRDMLHTAHESSLQLLRIVDDILDYSKLEANRLELEITTFNLREPLDAMLQLMRRP 198

Query: 679 ANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS---N 734
           A +K + +      N+   +  D   ++Q+  N++ NA+ FT  GG  ++          
Sbjct: 199 AEDKGLRLELDLDPNVRLPVRGDPVRLRQVLGNLVGNAVKFTERGGITLVVRRLGETPVQ 258

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
             +   VRDTG+G+      +  + F Q   S      GTGLGL + K +VD   G+  +
Sbjct: 259 HLLRFEVRDTGIGIDADSQARLFRAFSQADASTTRLYGGTGLGLAICKRIVDLMGGRIGV 318

Query: 795 FSTPAKGTLIEIIFPL 810
            S P +G+      PL
Sbjct: 319 ESEPGRGSTFWFEIPL 334


>gi|300021836|ref|YP_003754447.1| multi-sensor signal transduction histidine kinase [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299523657|gb|ADJ22126.1| multi-sensor signal transduction histidine kinase [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 428

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 71/362 (19%), Positives = 144/362 (39%), Gaps = 31/362 (8%)

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           ++ A  D   ++NR  ++L+ N A   +F         +P                L   
Sbjct: 90  LVAAIPDPTIVLNRSSVVLNYNAAALAIF---ERLTQGRPLEHVSRDPE-------LIAA 139

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKK 576
           ++       ++  +   +          +      +        I+          H + 
Sbjct: 140 VTGAFETAQKRKAMLLPRGGGGQRFIATVAPFGGEAGQPAVAALIT---------IHDES 190

Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI--EYANYIDRSG 634
              +    ++DF+A  SHE+RTPL ++ GF E ++    GP  N       +   +    
Sbjct: 191 EQHRALEMRTDFVANASHELRTPLASVRGFIETLQ----GPARNDEVAHDRFLKIMAEQA 246

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFE-PVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693
             +  +++DLL +S++E  K NL+    V L E ++E +  +   + E++I I     ++
Sbjct: 247 ERMTRLIDDLLLLSRVEE-KANLNPTGQVRLSELLNEVVRALTPVSEERQITITVEPESS 305

Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDTGVGMT 749
                 +   + Q+  N++ NA+ +   GG + +    +  +     V + V D G G+ 
Sbjct: 306 PLVAKGERDELFQVFHNLIENAVKYGRVGGSVKVHLRESERDPSKKRVAVTVTDDGPGIA 365

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
              L +  + F ++      R  GTGLGL +AK ++  + G+  + S   +GT  ++  P
Sbjct: 366 PEHLPRLTERFYRVSTEHSRRIGGTGLGLAIAKHILTRHQGELSVDSVVGRGTTFKVSLP 425

Query: 810 LY 811
            Y
Sbjct: 426 KY 427


>gi|153800850|ref|ZP_01955436.1| tmao reductase sytem sensor tors [Vibrio cholerae MZO-3]
 gi|124123560|gb|EAY42303.1| tmao reductase sytem sensor tors [Vibrio cholerae MZO-3]
          Length = 649

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 71/238 (29%), Positives = 117/238 (49%), Gaps = 8/238 (3%)

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
           ++ AE+ S  KS FLA +SHEIRTP+  ++G + ++++             Y   I+RSG
Sbjct: 125 RQQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLQDTTLTAT----QQHYVQVINRSG 180

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
             +L I+ND+LD SKIE+G + +H     L   V E   L+Q  A EK I +      ++
Sbjct: 181 RSLLAILNDVLDYSKIEAGHLEIHHTHFDLYRLVRETHELMQSRAREKGITLTYHIDEDV 240

Query: 695 PRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-VILRVRDTGVGMTNYE 752
            +    D   + Q+  N++ N I FT  G ++ I      + + +   V D+G+G+   E
Sbjct: 241 TQYWQGDEIRIGQVLNNLVGNGIKFTEQG-EVRIRIRLAPDGQGIRFAVEDSGIGIAEEE 299

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
                  F Q    +  +  GTGLGL +++ +V A  G+  + S   +G+      PL
Sbjct: 300 QATLFDAFTQADAGR-RKLGGTGLGLAISRKLVQAMGGELQLASQLGQGSCFGFTLPL 356


>gi|315172457|gb|EFU16474.1| PAS domain S-box [Enterococcus faecalis TX1346]
          Length = 591

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 72/363 (19%), Positives = 156/363 (42%), Gaps = 30/363 (8%)

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
            Q   +L+    G+ II+ +G +   N  + ++ G        K       +        
Sbjct: 250 EQFHELLDELMIGVFIIDTQGRLRLLNPKMQEMLGLSA-----KNMQSNYLEVIQDADLI 304

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY--SLTMHDISEWKQEKN 569
           +L   +  +     ++IT+        L L +       ++ Y      +D++  +Q + 
Sbjct: 305 HLIHQVVAEKNSLHQEITVTQGPTPLRLDLSLRYLDDQSANDYQVLGIAYDLTRVRQLE- 363

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
                          + DF++ VSHE++TP+T+++GF+E + +            ++ + 
Sbjct: 364 -------------KMQKDFVSNVSHELKTPVTSLLGFTETLIDG--AKEDPEVLDQFLHI 408

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           + +    +  ++ ++L++S+  S  +    + ++L++ ++E +S  Q     K++    +
Sbjct: 409 MQKDAQRLQQLIQEILELSR-GSATIPYAEQEITLEKFITEILSSYQQQLAAKQLK---T 464

Query: 690 FANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747
             + +P             I  N++ NAI ++   GQI IS     N+++ L V+DTG+G
Sbjct: 465 VVHGLPESQFFTKYELFYPIVKNLIENAIQYSQENGQITISYAIE-NQQLRLSVQDTGIG 523

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           ++  + E+  + F ++  ++     GTGLGL + +   +   GK  I S    GT   I 
Sbjct: 524 ISQKDQERIFERFYRVDKARSRHSGGTGLGLAIVQNYTELLGGKIAIDSHLGLGTTFTIT 583

Query: 808 FPL 810
            PL
Sbjct: 584 LPL 586


>gi|237745636|ref|ZP_04576116.1| signal transduction histidine kinase [Oxalobacter formigenes
           HOxBLS]
 gi|229376987|gb|EEO27078.1| signal transduction histidine kinase [Oxalobacter formigenes
           HOxBLS]
          Length = 577

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 82/252 (32%), Positives = 137/252 (54%), Gaps = 9/252 (3%)

Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
           + KLS     AE  S  KS+FL+R+SHEIRTP+  IIG +++    R       + +   
Sbjct: 180 QKKLSADLLAAENASREKSEFLSRMSHEIRTPMNGIIGMTKMA---RMSVDDKNKLLNSL 236

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
           + ID S   +L ++ND+LD+++IESGK+ L+ +P  L   V     + +  A + ++  R
Sbjct: 237 DKIDFSSRFLLALINDILDMARIESGKVELYNQPFDLLHLVDGIEIMFRQKAVDNQVTFR 296

Query: 688 TSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQI--IISTTHTSNEEVI--LRVR 742
            +  + ++P ++ D   + QI +N++SNA+ FTP+GGQ+   I    TS   V    R+ 
Sbjct: 297 VNTHDLSVPGVVGDELRINQIIINLVSNALKFTPAGGQVMLDIKAHRTSGNAVRLEFRIS 356

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG+GM+   +++  +PF Q   S  ++  GTGLGL +   +V    G   + S P  G+
Sbjct: 357 DTGIGMSEEFMQRMFEPFEQASES-AMQYGGTGLGLAICHNLVHMMNGTINVTSKPGNGS 415

Query: 803 LIEIIFPLYDTS 814
              +I  L  ++
Sbjct: 416 QFTVILTLEHSA 427


>gi|255015778|ref|ZP_05287904.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_7]
 gi|256841727|ref|ZP_05547233.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
 gi|256736621|gb|EEU49949.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
          Length = 752

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 84/481 (17%), Positives = 171/481 (35%), Gaps = 32/481 (6%)

Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS-DRTCIAASARLHTIQWN 406
           +  +T       +         +   +          +L    D      +A        
Sbjct: 279 YAQVTVNTIEMILSGKDSKEIPIQTAETPRAYLNYQHLLLHQIDPGLYPPNATYFQEPPG 338

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM------QLCSILEA 460
                 +  I           +    +       +   ++++I         +   +L+A
Sbjct: 339 FLQKYKIHIISLLVILALLITIGILRVRLFIQKQKAKDKELQIARQAQDLNQKYQLVLKA 398

Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK------PFTVFLEQNTPSVMNHYLT 514
           ++    I + +   L  N           +    +       F   +       M   + 
Sbjct: 399 SNMMTWIWDVKEARLECNNIYLTQRSIRDKGTDGQFCMSADEFYSGIHPEDLEQMQDAIN 458

Query: 515 EILSLDLRQTLEKITLGSTKEE---KLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEK 568
           ++++ +    +++              + +  I+ K          +     I++ K+ +
Sbjct: 459 KLIAGESIS-IDEEIRYLDDTGLEYTWIEIFAIVGKTDPEGKPAYLTGGTTLINQRKKME 517

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
            +L   K+  E+ +  KS FLA +SHEIRTPL AI+GFS ++         +    E+  
Sbjct: 518 QELRD-KEKIEESNRLKSAFLANMSHEIRTPLNAIVGFSNLLAQTN----PSEETKEFCE 572

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I+ +  L+L +VND+LD+SKIE+G+M+  +   ++           Q    +  + +  
Sbjct: 573 IIETNNELLLQLVNDILDLSKIEAGQMDFIYSEFNVSTLFRSLYQTFQSRVKD-GVTLYC 631

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748
                   I ++   + Q+  N L+NA  FT  G  I +      +  +   V+DTG G+
Sbjct: 632 EIPEQDCVIYSEKNRLTQVITNFLTNACKFTFQGS-IRMGYKEREDG-LYFYVKDTGKGI 689

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
               L    + F +  +      +GTGLGL + + ++D   GK  + S   KG+      
Sbjct: 690 ERKNLPHVFERFAKFDSFI----QGTGLGLSICQTILDNLHGKIGVESEEGKGSTFWFTI 745

Query: 809 P 809
           P
Sbjct: 746 P 746


>gi|83772706|dbj|BAE62834.1| unnamed protein product [Aspergillus oryzae]
          Length = 1362

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 76/255 (29%), Positives = 128/255 (50%), Gaps = 12/255 (4%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           +S  +    + + A++ AE  +  KS+FLA +SHEIRTP+  IIG +++  +        
Sbjct: 740 VSNLRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDD---LK 796

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
           P   E  N +    N +L I++D+LDISKIE+ +M +   P ++   V  A+  + + AN
Sbjct: 797 PYTREMLNVVHNLANSLLTIIDDILDISKIEANRMVIESIPFTVRGTVFNALKTLAVKAN 856

Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV-- 737
           EK + +     N +P  +  D   ++QI LN++ NAI FT  G ++ ++   +  E+   
Sbjct: 857 EKFLSLTYQVDNTVPDYVTGDPFRLRQIILNLVGNAIKFTEHG-EVKLTIRKSDREQCAA 915

Query: 738 -----ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
                   V DTG+G+   +L+     F Q   S   R  GTGLGL ++K +V+   G  
Sbjct: 916 NEYAFEFSVSDTGIGIEEDKLDLIFDTFQQADGSTTRRFGGTGLGLSISKRLVNLMGGDV 975

Query: 793 YIFSTPAKGTLIEII 807
           ++ S    G+     
Sbjct: 976 WVTSEYGHGSTFHFT 990


>gi|221236136|ref|YP_002518573.1| hybrid sensor histidine kinase/receiver domain-containing protein
           [Caulobacter crescentus NA1000]
 gi|220965309|gb|ACL96665.1| hybrid sensor histidine kinase/receiver domain protein [Caulobacter
           crescentus NA1000]
          Length = 574

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 74/228 (32%), Positives = 124/228 (54%), Gaps = 6/228 (2%)

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
           S  KS FLA +SHE+RTP+  ++G +  ++  +     + +  EY   I++SG+ ++ I+
Sbjct: 197 SRAKSAFLAMMSHELRTPMNGVLGLAHALRGTKL----DAQQSEYLEMIEQSGHGLMTIL 252

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN-IPRILAD 700
           ND+LD+SKIE+GK+NL   P  L +   +  ++    A  K + +    + +  P +  D
Sbjct: 253 NDILDLSKIEAGKLNLEVAPFDLRKLALQTRAVWSESARLKGLDLILEVSPSAPPWVSGD 312

Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760
              V+QI +N++SNA+ FT SG +++I     +   V L V DTGVGMT  ++ +   PF
Sbjct: 313 ATRVRQILMNLVSNALKFTESG-RVVIRLGGEAGGVVTLSVTDTGVGMTAEQIGRLFTPF 371

Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            Q   S   R  GTGLGL + + + +   G+  + S P  G+   +  
Sbjct: 372 AQGDASIARRFGGTGLGLSICRQLAELMAGEIIVSSEPGVGSTFTVRL 419


>gi|126659478|ref|ZP_01730611.1| serine/threonine kinase with two-component sensor domain [Cyanothece
            sp. CCY0110]
 gi|126619212|gb|EAZ89948.1| serine/threonine kinase with two-component sensor domain [Cyanothece
            sp. CCY0110]
          Length = 2001

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 79/251 (31%), Positives = 138/251 (54%), Gaps = 12/251 (4%)

Query: 563  EWKQEKN--KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
            E + E+   +L+ AK+ AE  +  KS+FL+ +SHE+RTPL  I+G+++++K         
Sbjct: 1525 EQRVEERTAELAEAKQKAETANQAKSEFLSNMSHELRTPLNGILGYAQILKRDSNLTSF- 1583

Query: 621  PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
                +    I  SG  +L ++ND+LD+SKIE+ KM ++ + +     +     ++++ A 
Sbjct: 1584 --QTQGLKIIHESGQHLLTLINDILDLSKIEARKMEIYPKGIHFPSFLDSVAGIIKMRAV 1641

Query: 681  EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIST----THTSNE 735
            +K IL ++ F + +P  I AD + ++Q+ LN+L NAI FT  G Q+        T  +  
Sbjct: 1642 DKNILFKSEFDSQLPLGIQADEKRLRQVLLNLLGNAIKFTDRG-QVTFRVNAIQTEANQA 1700

Query: 736  EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            ++   + DTGVG+T  +  K  +PF QI    + R EGTGLGL + + +V+    +  + 
Sbjct: 1701 QIRFEIVDTGVGITPEQATKIFQPFEQI-GDIERRAEGTGLGLAITQQLVELMGSELKVS 1759

Query: 796  STPAKGTLIEI 806
            ST  +G+    
Sbjct: 1760 STVGEGSTFSF 1770


>gi|327355389|gb|EGE84246.1| DRK1 histidine kinase [Ajellomyces dermatitidis ATCC 18188]
          Length = 1287

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 76/255 (29%), Positives = 130/255 (50%), Gaps = 12/255 (4%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           +S  +    + + A++ AE  +  KS+FLA +SHEIRTP+  IIG +++  +        
Sbjct: 683 VSNLRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDD---LK 739

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
           P   E  N +    N +L I++D+LDISKIE+ +M +   P S+   V  A+  + + AN
Sbjct: 740 PYPREMLNVVHSLANSLLTIIDDILDISKIEANRMVIEKIPFSMRGTVFNALKTLAVKAN 799

Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV-- 737
           EK + +     +++P  +  D   ++QI LN++ NAI FT  G ++ ++ + +  EE   
Sbjct: 800 EKFLSLAYQVDSSVPDYVTGDPFRLRQIILNLVGNAIKFTEHG-EVKLAISRSDREECKD 858

Query: 738 -----ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
                   V DTG+G+   +L+     F Q   S   +  GTGLGL ++K +V+   G  
Sbjct: 859 NEYAFEFSVSDTGIGIEEDKLDLIFDTFQQADGSTTRKFGGTGLGLSISKRLVNLMGGDV 918

Query: 793 YIFSTPAKGTLIEII 807
           ++ S    G+     
Sbjct: 919 WVTSEYGLGSSFHFT 933


>gi|320159170|ref|YP_004191548.1| signal transduction histidine kinase [Vibrio vulnificus MO6-24/O]
 gi|319934482|gb|ADV89345.1| signal transduction histidine kinase [Vibrio vulnificus MO6-24/O]
          Length = 716

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 83/257 (32%), Positives = 126/257 (49%), Gaps = 9/257 (3%)

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           +Q+   +  AK+ AE  +  KS FLA +SHE+RTPL AIIG    + +       + +  
Sbjct: 215 QQQSLDMQEAKRAAEASAETKSKFLANISHEVRTPLNAIIG----LSDTDHYLNASEQIR 270

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           EY + I RSG  +L ++ND+LDISKI+SGK+ L     SL + V +   L         +
Sbjct: 271 EYIDLIHRSGKHLLALMNDILDISKIDSGKLTLEQVEFSLKDIVDDTRVLFHERTQTPGV 330

Query: 685 LIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EVILR 740
                   +   I   D   + QI  N+ SNAI FT  G QI ++ T  +      + + 
Sbjct: 331 ESFIITPQDCDMIFYGDPLRLFQIISNLCSNAIKFTHEG-QIKVAFTVQNRGPNSVLQIC 389

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V DTG+G++  +L+K    F Q  +S   +  GTGLGL + + + +   G   I S   +
Sbjct: 390 VSDTGIGISEAQLQKVFDEFVQADDSTTRKYGGTGLGLAICQKLTNLMQGTLRIESELNR 449

Query: 801 GTLIEIIFPLYDTSHPH 817
           GT + +   L     PH
Sbjct: 450 GTHVTLSLTLPLLHAPH 466


>gi|302039538|ref|YP_003799860.1| putative sensor histidine kinase [Candidatus Nitrospira defluvii]
 gi|300607602|emb|CBK43935.1| putative Sensor histidine kinase [Candidatus Nitrospira defluvii]
          Length = 465

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 87/443 (19%), Positives = 177/443 (39%), Gaps = 31/443 (6%)

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
            +  +L +           L    W     L +  +     +          +  +    
Sbjct: 39  EQEKLLLQGVTQGKTVPTDLFPALWQSRRDLTLVALLVFLVSAIGITAVITFLHYDSTLR 98

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
            + + K         +ILE+   G+  +NR GII + N +   +      D+L   +   
Sbjct: 99  TLEEVKGLA-----RNILESIPTGVLTLNRSGIITAVNPSAEAVLKRASLDLLGHSYESV 153

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSL 556
             +     +   L   L +  R   +K     +++  L ++R+   +L           L
Sbjct: 154 FTEGD--TIRGALDAALRI-HRHMSQKDLPYESRDRTLHTIRVSTAELTGDDGRPAGVIL 210

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
              D++EW   +      +    ++ +      A V+HE+R PL+AI     +++ +   
Sbjct: 211 QAQDVTEWLALER-----RVRVAEKLAALHTLSAGVAHELRNPLSAIDLNLHLLEEEFKE 265

Query: 617 PLGNPRYIEY-ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
             G  +   Y    ++     +  I+++ +  ++   G M LH   V L   +   ++L+
Sbjct: 266 QGGPAKQAAYYLRVLNAECRRLSVILDNFMKFARP--GSMGLH--AVDLPALIEHIVALM 321

Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
           +  A E++I +    + ++  +L D   + Q+ +NI+ NA H  P+GG+  I+T   + E
Sbjct: 322 RFEAEERKIQLEQRVSKDMSPVLGDETQISQVLVNIVVNAFHAMPNGGRCSIATEERTEE 381

Query: 736 ---EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
               V + V DTG+G+   +L +  +PF    +       GTGLGL +A  ++  + G  
Sbjct: 382 GKRWVEIVVSDTGIGIEQEDLPRLFEPFYTTKS------GGTGLGLAIAYRIMQDHSGTI 435

Query: 793 YIFSTPAKGTLIEIIFPLYDTSH 815
           ++ S P  GT + + FP+     
Sbjct: 436 HVTSVPGNGTQVVMQFPVAVDHQ 458


>gi|86361054|ref|YP_472941.1| two-component sensor histidine kinase/response regulator hybrid
           protein [Rhizobium etli CFN 42]
 gi|86285156|gb|ABC94214.1| probable two-component sensor histidine kinase/response regulator
           hybrid protein [Rhizobium etli CFN 42]
          Length = 797

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 91/679 (13%), Positives = 210/679 (30%), Gaps = 74/679 (10%)

Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS 242
           I     +      L +R ++  + L  + +G    ++    + S         +   V  
Sbjct: 128 IKRHIELGAVHARLQRRNEQLDTALASMGQGVCLFDEAGRLLLSNDRYAEVYGLDPSVIH 187

Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ--------------- 287
             +      ++ +       TS    L   E  +  +  +   K+               
Sbjct: 188 PGQSLEDILNLRQRVGAVPATSTSEYLAWAEATNKGDTPRDWIKELKSGQIIRGYHQRTS 247

Query: 288 -------YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-G 339
                  +    Q    E     +H                     +  P    ++    
Sbjct: 248 DGGWVSTHEDITQAWQAEKALAKAHVQAERAEQEARAAHARLLAAFEVVPEGLVLFDEED 307

Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399
                N  +  L        ++       L    +               +   +A    
Sbjct: 308 RFVLWNQRYEQLYAESGDMLVKGMRFEDRLRAGLERGQYPEA-----VGREEEWLAERLA 362

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459
            H    ++               +        GI  +  D       ++++      + E
Sbjct: 363 HHAKPTSKHEQRLPGNHWIRIEERQISEGGSVGIRVDITD-------LKMQEASFRLLFE 415

Query: 460 ATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
                + + + E    L  N+A    +GY +E  L    +    Q T          ++ 
Sbjct: 416 GNPMPMWVYDHETLRFLHVNQAAIDHYGYRLEQFLTMRLSDIEAQETNPP-----EAVVF 470

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRI--IIKKLPFSSCYSLTMHDISEWKQEK-------- 568
                   + +     +   + + +          +   + + D++E K+ +        
Sbjct: 471 DLEDTASSRSSRHLKGDGTAIEVTVYSTCLNYKGKAASLMAVVDVTEAKRAEKALLQHRD 530

Query: 569 -----------------NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
                             +L    +  ++ +  +  F++  SHE RTPL  I G ++ + 
Sbjct: 531 TLEEMVRSRTVELARQTEELERMLEQEKQINELQRQFVSMASHEFRTPLAVIDGAAQRLI 590

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
            ++          E A+ I  S + +L+++  +L   +++ G++ +  +P S+ E +   
Sbjct: 591 RRK-EAATPEFLCEKADQIRSSVSRMLELMESILAAGRLDHGRITIVHKPCSIAEIIGIC 649

Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
            +  +  +  +            P I  D  ++ Q+  N+ SNA+ + P    + + T  
Sbjct: 650 SA--RQESIRRSHRFLLDLDRLPPTIFGDHPALDQVFSNLFSNAVKYAPDAPNVHV-TGW 706

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
                V + VRD G+G+   +L K  + + +  +S  I   GTG+GL L K +++ + G 
Sbjct: 707 QDGTSVCITVRDEGIGIDTDDLPKMFQRYFRARSSTGIA--GTGIGLNLVKQIIELHGGT 764

Query: 792 FYIFSTPAKGTLIEIIFPL 810
             + S+   GT   +  P+
Sbjct: 765 IEVASSRGNGTTFTLRLPI 783



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/389 (8%), Positives = 86/389 (22%), Gaps = 39/389 (10%)

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY----AHKDDVLKTEKYPLLTS 264
           +  + H  V +   D                +    +            LK         
Sbjct: 31  DDLERHGIVLRVHCDRAELHEWAAKRPQPELILLDAQSREGGGLEDCRRLKANPLTRDIP 90

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
               +  + +   I             L + ++       H    ++ A           
Sbjct: 91  IIIMVSPEGEESRIEGLAGGAVDCVSNLVSAAELVARIKRHIELGAVHARLQRRNEQLDT 150

Query: 325 TVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
            +        ++   G L  +N  +  +                 L    ++    A   
Sbjct: 151 ALASMGQGVCLFDEAGRLLLSNDRYAEVYGLDPSVIHPGQSLEDILNLRQRVGAVPATST 210

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
                       A A               +       +Q   +        +       
Sbjct: 211 SEYLA------WAEATNKGDTPRDWIKELKSGQIIRGYHQRTSDGGWVSTHEDITQAWQA 264

Query: 444 KRKM-----EIEVMQLC---------SILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
           ++ +     + E  +           +  E   +G+ + + E   +  N+   +L+    
Sbjct: 265 EKALAKAHVQAERAEQEARAAHARLLAAFEVVPEGLVLFDEEDRFVLWNQRYEQLYAESG 324

Query: 490 EDIL-RKPFTVFLE--------QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
           + ++    F   L                  +L E L+   + T +            + 
Sbjct: 325 DMLVKGMRFEDRLRAGLERGQYPEAVGREEEWLAERLAHHAKPTSKHE--QRLPGNHWIR 382

Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKN 569
           +    ++            DI++ K ++ 
Sbjct: 383 IE---ERQISEGGSVGIRVDITDLKMQEA 408



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 43/400 (10%), Positives = 103/400 (25%), Gaps = 35/400 (8%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKM-IGMRLCDVS---------DILHIDPNNHIGDLLKR 139
           D  G L   ++   +  G     +  G  L D+                      +   +
Sbjct: 163 DEAGRLLLSNDRYAEVYGLDPSVIHPGQSLEDILNLRQRVGAVPATSTSEYLAWAEATNK 222

Query: 140 QNTWYGKTTLWP----IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA 195
            +T             I G +                + +   +     HV         
Sbjct: 223 GDTPRDWIKELKSGQIIRGYHQRTSDGGWVSTHEDITQAWQAEKALAKAHVQAER--AEQ 280

Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV-- 253
             +    +     E+      +  E+            L  ++    +            
Sbjct: 281 EARAAHARLLAAFEVVPEGLVLFDEEDRFVLWNQRYEQLYAESGDMLVKGMRFEDRLRAG 340

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINL----NQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
           L+  +YP     E     +   H         Q     ++  ++         +  R   
Sbjct: 341 LERGQYPEAVGREEEWLAERLAHHAKPTSKHEQRLPGNHWIRIEERQISEGGSVGIRVDI 400

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYSHG--NLFYANPSFLLLTKYKSVDDI-EIAGGL 366
           +     +    L     +  P+P +VY H      + N + +    Y+    +      +
Sbjct: 401 TDLKMQEASFRL---LFEGNPMPMWVYDHETLRFLHVNQAAIDHYGYRLEQFLTMRLSDI 457

Query: 367 STLLDAP------KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
                 P       L D  + +     + D T I  +     + +  + +  M  +   +
Sbjct: 458 EAQETNPPEAVVFDLEDTASSRSSRHLKGDGTAIEVTVYSTCLNYKGKAASLMAVVDVTE 517

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
           A +  + + Q+    E++       ++  +  +L  +LE 
Sbjct: 518 AKRAEKALLQHRDTLEEMVRSRTV-ELARQTEELERMLEQ 556



 Score = 46.2 bits (108), Expect = 0.023,   Method: Composition-based stats.
 Identities = 31/282 (10%), Positives = 70/282 (24%), Gaps = 26/282 (9%)

Query: 71  ENTFVFDPIPRTVRFTWNIDAH-GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP 129
           E +F        +   W  D        +++      G    + + MRL D+       P
Sbjct: 407 EASFRLLFEGNPMP-MWVYDHETLRFLHVNQAAIDHYGYRLEQFLTMRLSDIEAQETNPP 465

Query: 130 NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRV 189
              + DL    ++    +     +GT + V +    L    +                  
Sbjct: 466 EAVVFDLEDTASSRS--SRHLKGDGTAIEVTVYSTCLNYKGKAASLMAVV------DVTE 517

Query: 190 DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH 249
                    +       +   +    + + E+ +   +Q    +   +  VS  +  +  
Sbjct: 518 AKRAEKALLQHRDTLEEMVRSRTVELARQTEELERMLEQEKQINELQRQFVSMASHEFRT 577

Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
              V+      L+  +E++ P  E          +       L  +   +      R   
Sbjct: 578 PLAVIDGAAQRLIRRKEAATP--EFLCEKADQIRSSVSRMLELMESILAAGRLDHGRITI 635

Query: 310 --------------SLSAYFDEGENLTPETVDKCPIPFFVYS 337
                         S         +     +D+ P   F   
Sbjct: 636 VHKPCSIAEIIGICSARQESIRRSHRFLLDLDRLPPTIFGDH 677


>gi|17229375|ref|NP_485923.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17130973|dbj|BAB73582.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 1194

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 69/257 (26%), Positives = 135/257 (52%), Gaps = 5/257 (1%)

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
                 E ++ +  +    +     S +KS+FLA +SHE+RTPL +++  ++++ +   G
Sbjct: 500 VARKNQEIEKARKFIEEKAEQLALSSRYKSEFLANMSHELRTPLNSLLILAKLLADNSSG 559

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
            L N + +EY+  I  +G  +L+++ND+LD++KIESG +++  EP+   +         Q
Sbjct: 560 NLSN-KQVEYSQTIYSAGTDLLELINDILDLAKIESGTLSVELEPIDFADLHDYIKRTFQ 618

Query: 677 LYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHT 732
             A +K +         +P  IL+D + ++QI  N+L+NA  FT  GG   +I +   +T
Sbjct: 619 QVAQDKGLSFSIERDERLPSTILSDPKRLQQILKNLLANAFKFTEQGGVNLRIGLDQINT 678

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
           ++  +   + DTG+G+   + +   + F Q+  +   +  GTGLGL +++ +     G+ 
Sbjct: 679 NHPMITFAISDTGIGIPQEKQQIIFEAFQQVDGTTSRKYGGTGLGLSISRELAQMLGGRL 738

Query: 793 YIFSTPAKGTLIEIIFP 809
            + S P +G+   +  P
Sbjct: 739 GLVSQPGQGSTFTLYLP 755


>gi|315658231|ref|ZP_07911103.1| sensor histidine kinase SrrB [Staphylococcus lugdunensis M23590]
 gi|315496560|gb|EFU84883.1| sensor histidine kinase SrrB [Staphylococcus lugdunensis M23590]
          Length = 588

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 68/395 (17%), Positives = 156/395 (39%), Gaps = 34/395 (8%)

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII 474
                  ++  E            + + N + +        S++ + ++G+  IN    I
Sbjct: 226 ISSVTTKDEIGELSRALNDMS--FEIQENVQALSTSKNIRDSLINSMAEGVVGINDHRDI 283

Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
           + +N+   ++                + Q+    +   + +  + +  +   +     T+
Sbjct: 284 ILSNKMADEIL-------------PTINQSMYERIEDQIEDTFTSEGTEF--REYDFDTR 328

Query: 535 EEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
               +   I   +    S   + + D++                      K DF+A VSH
Sbjct: 329 YYVFIMSYIPQIQEDGRSGIVVIIRDMT--------------NEHNLDQMKKDFIAIVSH 374

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           E+RTP++ + G++E I +            E  + +    N +  +VN+LL+++++++  
Sbjct: 375 ELRTPISLLQGYTESIVDGIVTE--PEEIKESLSIVLDETNRLNRLVNELLNVARMDAEG 432

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714
           ++++ E   +   +++  +  +  A++  + +  +   N      D   + Q+  N++ N
Sbjct: 433 LSVNKEIQPIAPLLNKIQTKYRQQASDLSLNMYLTPETNDALWYYDSDRIDQVLTNLIDN 492

Query: 715 AIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           A  +T  G  I I++  T    V L + DTG G+    L      F ++  S+    +GT
Sbjct: 493 ATRYTQPGDTISITSEDTDKYNV-LHINDTGSGIAPEHLNLVFDRFYKVEASRTRGKQGT 551

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GLGL + K +++ + G   + S   +GT   I  P
Sbjct: 552 GLGLFICKMIIEEHGGTITVSSVVGEGTTFTIKLP 586


>gi|71907262|ref|YP_284849.1| sensor histidine kinase [Dechloromonas aromatica RCB]
 gi|71846883|gb|AAZ46379.1| ATP-binding region, ATPase-like:Histidine kinase A, N-terminal
           [Dechloromonas aromatica RCB]
          Length = 903

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 123/712 (17%), Positives = 249/712 (34%), Gaps = 51/712 (7%)

Query: 131 NHIGDLLKRQNTWYGKTTLWPIEGTNLYVP---IDLAALPIYSRNREFSGFRGFGIVHVN 187
             +GDL +R         L  ++ +        I L+ L I    R+F       +V   
Sbjct: 216 GGLGDLFQRAAASPELGRLLQLDSSRAGTWTSLIVLSGLAIIFLPRQF----QIIVVENV 271

Query: 188 RVDNDPRAL----GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKN--KVS 241
              +  RA+       L      L     G     ++ ++  +     P  R      + 
Sbjct: 272 DESHLKRAVWLFPLYLLLINIFVLPVALGGLLHFGEQGFNPDTFVLTLPLARGAEVLALL 331

Query: 242 SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301
           +     +    ++  E   L T   + L       +  L    ++   G L    + +  
Sbjct: 332 AFIGGLSAATGMVIVETIALSTMVCNDLVMPWLLRSTWLQAENRQDLSGLLIAIRRIAIA 391

Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV------------YSHGNLFYANPSFL 349
            +    +    A  +    +    +    +  F                G +   +  F+
Sbjct: 392 LILLLGYIYFRAAGEAYALVGIGLISFTAVAQFAPAMFGGMYWKQGTRAGAVAGLSAGFV 451

Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
           +      +     +G +++      L     +K   L+      +   +           
Sbjct: 452 IWLYTLLLPSFAKSGWIASGFVEHGLFGIGWLKAQALFGLSG--LDEISHCLWWSMLANI 509

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469
              +        +    +  +  ++    D R  + ++      L +++     G+    
Sbjct: 510 GAYVAVSLHSTPDAVEASQAERFVDVFRFDQRKAEARLWRGKASLDALV-----GLL--- 561

Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
                L  NRA  +L          +    +      +    +    L+  +     ++ 
Sbjct: 562 --ERFLGANRAHQQL----GLYAQGRQMADWRALPVDAPFVQFAEAELAGAIGSASARVM 615

Query: 530 LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK-----NKLSHAKKIAEKESSH 584
           + S  +E+ L L  ++  L  ++       ++ E KQ +      +L  A +   +    
Sbjct: 616 VASVAQEEDLGLEEVLDILDEATQVRAHSREL-EAKQRELEAATTELREANERLRELDRM 674

Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
           K DF++ V+HE+RTPLT+I   SE++       L     + +   I      +  ++N +
Sbjct: 675 KDDFISTVTHELRTPLTSIRALSEMLHEDPRLELV--ERMRFLGIIVGEAERLTRLINQI 732

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704
           LD++K+ESG+       V L E   E +  V     +K +L+     +  P +LAD   +
Sbjct: 733 LDMAKLESGRAEWTTGEVDLGEIARETMDSVGQLFRDKGVLLEGDIPDGGPIVLADRDRL 792

Query: 705 KQIALNILSNAIHFTPSG-GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
            Q+ +N+LSNA+ F P   G + +         V + VRD G G+T  E E   + F Q 
Sbjct: 793 TQVLINLLSNAVKFVPGELGCVQVKIGV-DGNMVRVEVRDNGPGLTAEECEVIFEKFRQG 851

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            N+   + +GTGLGLP+++ +++   GK ++ S P +G       PL  +  
Sbjct: 852 GNTLTGKPKGTGLGLPISRQIIEYFGGKLWVESHPGEGANFIFTVPLPASEE 903


>gi|66046927|ref|YP_236768.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase, HAMP region:histidine
           kinase A, N-terminal:Hpt [Pseudomonas syringae pv.
           syringae B728a]
 gi|63257634|gb|AAY38730.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase, HAMP region:Histidine
           kinase A, N-terminal:Hpt [Pseudomonas syringae pv.
           syringae B728a]
          Length = 917

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 76/243 (31%), Positives = 140/243 (57%), Gaps = 8/243 (3%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  A+K A + S  KS+FLA +SHEIRTPL  I+GF+ +++     P    R  +Y   
Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSELTP----RQFDYLGT 325

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I++S + +L I+N++LD SKIE+GK+ L   P +L + + + ++++   A+ K++ + + 
Sbjct: 326 IEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSL 385

Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQI---IISTTHTSNEEVILRVRDTG 745
              + P  +  D   ++QI  N++SNAI FT  G  +   ++      + ++ + V+DTG
Sbjct: 386 VYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAMLEDETEEHAQLRISVQDTG 445

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+++ ++    + F Q  NS   +  GTGLGL ++K +++   G+  + STP +G+   
Sbjct: 446 IGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFW 505

Query: 806 IIF 808
           I  
Sbjct: 506 ISL 508


>gi|282897975|ref|ZP_06305970.1| Histidine Kinase [Raphidiopsis brookii D9]
 gi|281197119|gb|EFA72020.1| Histidine Kinase [Raphidiopsis brookii D9]
          Length = 1056

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 74/264 (28%), Positives = 135/264 (51%), Gaps = 10/264 (3%)

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
           + +   D++E +Q   +L+       + +  K +FLA +SHE++TPLTA++G S ++ ++
Sbjct: 330 WLVLATDVTEQQQLFKELAAKNADLIQLNRLKDEFLACISHELKTPLTAVLGLSRLLVDK 389

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
             G L N R   YA  I +SG  ++ +VND+LD++++E+G+M L   PV + E    A++
Sbjct: 390 NLGEL-NERQARYAGLIHQSGRHLMSVVNDILDLTRMETGQMELTPSPVRIQEVCDRALT 448

Query: 674 LVQL---YANEKR-----ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725
             +        K           +    +  I+AD   ++Q+ +++L NA  FT S G++
Sbjct: 449 EARAVHTQTGRKGESLPSHEFSLTIEPGLKEIVADELRLRQMLVHLLGNAFKFTESFGKV 508

Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
            +         +   V DTG+G+ +++     + F Q+ N    + EGTGLGL L +A+ 
Sbjct: 509 GLRVNRWE-GWIAFTVWDTGIGIPDHQQHLIFQKFQQLENPLNRQFEGTGLGLVLTRALA 567

Query: 786 DANMGKFYIFSTPAKGTLIEIIFP 809
             + G     S   KG+   ++ P
Sbjct: 568 RLHGGDVSFLSREGKGSQFTLLLP 591


>gi|265765367|ref|ZP_06093642.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|263254751|gb|EEZ26185.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 389

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 79/340 (23%), Positives = 143/340 (42%), Gaps = 20/340 (5%)

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL-EKITLGSTKEE- 536
            A  ++F      +        + +     +      IL   +++ + E       +E  
Sbjct: 54  PAGWEIFHNDSFPVSIARVYQGIYKEDRLRVIEACQGILKGKMKKVVVELRFWAKKREGF 113

Query: 537 --KLLSLRIIIKKLPFSSCYSLT---MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
             + L +  I  K+  +         +  I+  K  + +L+ AK+ AE+ +  KS  +A 
Sbjct: 114 VLEWLEMHAIPGKVDENGRLLTVEGSLMSITRRKVMEEELTAAKEKAEEANRLKSALIAN 173

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           ++HEIRTPL AI+GF+ ++              EY   I  +   +L ++ND++D+S IE
Sbjct: 174 MNHEIRTPLNAIVGFASLLS----IIDDEKEQQEYIGLIQSNTEHLLRLMNDVIDLSNIE 229

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
           SG M++    V LD  + E        A    +++      +   I  D   + QI  ++
Sbjct: 230 SGVMDIVGSDVVLDSLMKEMELTYVPKAETDNLVLAWDREQSNAHIYTDRDRLIQILEHL 289

Query: 712 LSNAIHFTPSGGQIIISTTHT--SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
           L NAI FT  G    +   +    N ++   V DTG G+ N + E   + F ++ +    
Sbjct: 290 LDNAIKFTTKG---TVRWGYQEKENGQIRFYVTDTGCGIPNDKKEVIFERFVKLDSFT-- 344

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             +G GLGL L K +++   G   + S   +G+      P
Sbjct: 345 --QGLGLGLSLCKIIIERMHGTIGVESEVGEGSTFWFTIP 382


>gi|261214026|ref|ZP_05928307.1| multi-sensor hybrid histidine kinase [Brucella abortus bv. 3 str.
           Tulya]
 gi|260915633|gb|EEX82494.1| multi-sensor hybrid histidine kinase [Brucella abortus bv. 3 str.
           Tulya]
          Length = 906

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 99/626 (15%), Positives = 208/626 (33%), Gaps = 51/626 (8%)

Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271
           +G      + Y   +  +    +R  ++V +     +     L       L+++E     
Sbjct: 153 RGQIVYANQAYARMTGATDADGIRPLDQVLASEPAASDAIYRLTNAVRDGLSAQEELRIS 212

Query: 272 QEDFHTINLNQY--TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE-----NLTPE 324
                  N +      +     L+  ++     ++ +         ++            
Sbjct: 213 GGLSRGANGSLAPVWYRIKARALEGGAEFKGPLVAWQVADISEERAEQERFFQELQEAIN 272

Query: 325 TVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
            +D  P  FF     G + Y N +               +  L+ ++    ++       
Sbjct: 273 HLDHAPAGFFSANPAGRIIYLNATLAEWLGVDLTQFTPGSLTLNDIVAGSGMA------L 326

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
           +   +++      +     +      SLA+ F    +  +         I  +  +   +
Sbjct: 327 IKAVKAEPGTSRNTVIDLDLIKRNGQSLAVRFYHRVQTARDGMPGTTRTIVLDRAEGDDS 386

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG--YPVEDILRKPFTVFL 501
                   ++      +    IA ++ EG  L TN     +F      + I R+     +
Sbjct: 387 SVAQRSAEVRFTRFFNSAPMAIAAVDAEGHTLRTNARFLDIFSGVVDRDAIDRRVKLENV 446

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF----SSCYSLT 557
                    +                 T+    EE+ +   +                ++
Sbjct: 447 VHERDRETFNKALAAAFAGQASISPVDTVLPGNEERHIRFYMSPVTDLGGEAAEEAAVIS 506

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
             + +E K  +N+++ ++K+              ++H+    LTAII  S+++       
Sbjct: 507 AVETTEQKALENQMAQSQKM-----QAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNH--R 559

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
             +P + +  N I ++ N    +V  LL  S+    +  L  E + L + +++ + ++  
Sbjct: 560 ASDPSFPDIMN-IKQNANRAASLVRQLLAFSR----RQTLRPEVLDLTDVLAD-LRMLLA 613

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT------- 730
               K I ++     ++  + ADL   +Q+A+N+  NA    P GGQI + T        
Sbjct: 614 RLVGKDIELKIDHGRDLWPVKADLGQFEQVAVNLAVNARDAMPEGGQITLRTRNIPAADA 673

Query: 731 -------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
                      + V+  V DTG G+    LEK  +PF          G+GTGLGL +   
Sbjct: 674 AKLHYRDLPEADYVVFEVEDTGTGIPADVLEKIFEPFFTTK----EVGKGTGLGLSMVYG 729

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFP 809
           ++    G  Y  S   KGT  +I  P
Sbjct: 730 IIKQTGGFIYCDSEVGKGTTFKIFLP 755



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/240 (11%), Positives = 71/240 (29%), Gaps = 11/240 (4%)

Query: 319 ENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
           ++L    +D  P    +    G + YAN ++  +T     D I     +     A + + 
Sbjct: 133 QDLAHSFMDTQPEGTVISDPRGQIVYANQAYARMTGATDADGIRPLDQV----LASEPAA 188

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNR--ENSLAMTFIPFEKANQFPENMPQNGIEP 435
           ++AI  +     D        R+          +   + +    +A +         +  
Sbjct: 189 SDAIYRLTNAVRDGLSAQEELRISGGLSRGANGSLAPVWYRIKARALEGGAEFKGPLVAW 248

Query: 436 EDVDTRINKRKMEIEVMQLC-SI--LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
           +  D    + + E    +L  +I  L+    G    N  G I+  N  +++  G  +   
Sbjct: 249 QVADISEERAEQERFFQELQEAINHLDHAPAGFFSANPAGRIIYLNATLAEWLGVDLTQF 308

Query: 493 LRKPFT-VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
                T   +   +   +   +           ++   +    +   +     ++     
Sbjct: 309 TPGSLTLNDIVAGSGMALIKAVKAEPGTSRNTVIDLDLIKRNGQSLAVRFYHRVQTARDG 368



 Score = 61.2 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 47/420 (11%), Positives = 103/420 (24%), Gaps = 38/420 (9%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD--ILHIDPNNHIGDLLKRQNTWYGKT 147
           D  G +   ++   +  G      I   L  V        D    + + ++   +   + 
Sbjct: 151 DPRGQIVYANQAYARMTGATDADGI-RPLDQVLASEPAASDAIYRLTNAVRDGLSAQEEL 209

Query: 148 TL-----WPIEGTNLYVPIDLAALPIYSRNREFSG-FRGFGIVHVNRVDNDPRALGKRLD 201
            +         G+   V   + A  +     EF G    + +  ++    +     + L 
Sbjct: 210 RISGGLSRGANGSLAPVWYRIKARALEGGA-EFKGPLVAWQVADISEERAEQERFFQELQ 268

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR------MKNKVSSLTEYYAHKDDVLK 255
           +  +HL     G  S       I+   +    L           ++           ++K
Sbjct: 269 EAINHLDHAPAGFFSANPAGRIIYLNATLAEWLGVDLTQFTPGSLTLNDIVAGSGMALIK 328

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN--NSKESFEYLSHRNHPSLSA 313
             K    TS  + +                     T ++          L        S 
Sbjct: 329 AVKAEPGTSRNTVIDLDLIKRNGQSLAVRFYHRVQTARDGMPGTTRTIVLDRAEGDDSSV 388

Query: 314 YFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLT-KYKSVDDIEIAGGLSTLLD 371
                E       +  P+    V + G+    N  FL +       D I+    L  +  
Sbjct: 389 AQRSAEVRFTRFFNSAPMAIAAVDAEGHTLRTNARFLDIFSGVVDRDAIDRRVKLENV-V 447

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
             +  +         +    +       L     N E  +     P              
Sbjct: 448 HERDRETFNKALAAAFAGQASISPVDTVL---PGNEERHIRFYMSPVTDLGGEAAEEAAV 504

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSI----------LEATSDGIAIINREGIILSTNRAV 481
               E  + +  + +M  +  ++ ++                 I + +    +L TN   
Sbjct: 505 ISAVETTEQKALENQM-AQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSD---LLLTNHRA 560



 Score = 48.5 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 45/134 (33%), Gaps = 12/134 (8%)

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY-LT 514
           S ++   +G  I +  G I+  N+A +++ G    D   +P    L     +    Y LT
Sbjct: 138 SFMDTQPEGTVISDPRGQIVYANQAYARMTGATDAD-GIRPLDQVLASEPAASDAIYRLT 196

Query: 515 EILSLDLRQTLEKITLG---STKEEKLLSLRIIIKKLPFSSC-------YSLTMHDISEW 564
             +   L    E    G         L  +   IK               +  + DISE 
Sbjct: 197 NAVRDGLSAQEELRISGGLSRGANGSLAPVWYRIKARALEGGAEFKGPLVAWQVADISEE 256

Query: 565 KQEKNKLSHAKKIA 578
           + E+ +     + A
Sbjct: 257 RAEQERFFQELQEA 270


>gi|153832421|ref|ZP_01985088.1| sensory transduction protein kinase [Vibrio harveyi HY01]
 gi|148871450|gb|EDL70313.1| sensory transduction protein kinase [Vibrio harveyi HY01]
          Length = 1000

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 82/247 (33%), Positives = 128/247 (51%), Gaps = 8/247 (3%)

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           Q K     AK  A K S  KS FLA +SHEIRTPL  +IG SEV+ +            +
Sbjct: 323 QAKEDAEQAKDDAIKASKAKSSFLANMSHEIRTPLNGVIGISEVLSDTSLTAT----QKD 378

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           Y   I+ S  L+L ++ND+LD SKIESG + +      + E++ +  S+V   A EK I 
Sbjct: 379 YVGTIETSSQLLLSLINDILDFSKIESGMLLISPHSTCVRESIYDIASIVSPKAKEKGID 438

Query: 686 IRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVI--LRV 741
           ++ S + N P R++ D   ++Q+ +N +SNA+ FT  G   + ++T   S    +    V
Sbjct: 439 LKVSISRNTPYRLMIDDHRLRQVIMNFMSNAVKFTEKGSVHLSVTTHGVSGANAVMEFSV 498

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
           +D+G+G+   + +   +PF Q  NS   +  GTGLGL ++  +V+   GK  + S    G
Sbjct: 499 QDSGIGIDEQQQKNIFEPFAQEDNSTTRQFGGTGLGLAISTQLVELMGGKIQLESEKGHG 558

Query: 802 TLIEIIF 808
           +      
Sbjct: 559 SRFFFQI 565


>gi|332708955|ref|ZP_08428926.1| PAS/PAC sensor hybrid histidine kinase [Lyngbya majuscula 3L]
 gi|332352497|gb|EGJ32066.1| PAS/PAC sensor hybrid histidine kinase [Lyngbya majuscula 3L]
          Length = 701

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 62/472 (13%), Positives = 177/472 (37%), Gaps = 43/472 (9%)

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
           ++         L   +L ++N ++ +    +             +    ++ + M  +  
Sbjct: 117 EMIGQNHHDVYLLDYRLGEHNGLELLGEAIARGCTAPIIL----LTAQGDHEVDMEAMKA 172

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
             A+   ++  +  +    +   + +++ + ++ +  ++L+  +D I + + +  I   N
Sbjct: 173 GAADYLDKSQLRGPLLERSIRYALERQQAQQKIREQAALLDVATDAILVRDLDNTISFWN 232

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
           +    L+G+   +++ K   + L +  P+ +      +                TK+ K 
Sbjct: 233 KGAECLYGWQAAEVIGKKEHLLLYEQAPADLAEADQSVAKTGE---WYGELNQVTKDGKE 289

Query: 539 LSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
           + +      +           +   +I+E KQ + +  HA+++              ++H
Sbjct: 290 IIVESRWTLVQNPQGQAKSILIVNTNITEKKQLETQFLHAQRM-----ESIGTLAGGIAH 344

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           ++   L  I+  +++++      + + R+++    ++ +      +V  +L  ++  +G+
Sbjct: 345 DLNNLLAPILMSAQLLQ----LKISDQRHLQLLKTVENNARRGAGLVKQVLSFARGITGQ 400

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714
             +    + +   + E   ++        I + T    N+  +  D   + Q+ +N+  N
Sbjct: 401 RTV----LQVRHLIREIRHIILETFPR-SIELSTDIDPNLWSVSGDATQLHQVLMNLCIN 455

Query: 715 AIHFTPSGGQIIISTT--------------HTSNEEVILRVRDTGVGMTNYELEKAMKPF 760
           A      GG + +S                      +++ V D+G+G+      +  +PF
Sbjct: 456 ARDAMVDGGTLTLSAQNIFLDPNYARMHIDADVGPYIVVTVADSGIGIPLKIQPRIFEPF 515

Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
                     G+GTGLGL   + +V ++ G   ++S    GT  ++  P  +
Sbjct: 516 FTTK----EIGQGTGLGLSTVRGIVKSHGGFVNVYSEVGVGTNFKVYLPAVE 563


>gi|161521754|ref|YP_001585181.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           multivorans ATCC 17616]
 gi|189352083|ref|YP_001947710.1| two-component system capsular synthesis sensor histidine kinase
           [Burkholderia multivorans ATCC 17616]
 gi|160345804|gb|ABX18889.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           multivorans ATCC 17616]
 gi|189336105|dbj|BAG45174.1| two-component system capsular synthesis sensor histidine kinase
           [Burkholderia multivorans ATCC 17616]
          Length = 1029

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 107/674 (15%), Positives = 221/674 (32%), Gaps = 57/674 (8%)

Query: 169 YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228
           Y+ +++ +      +V         R    R       L  I    S         +   
Sbjct: 108 YASDQQIAITPYPSVVFGVPGQTADRREVARYLSLSVLLARICAASSINRGYALIGYHYS 167

Query: 229 SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288
           +      +           A  D+  +T     +   ++             +      +
Sbjct: 168 TRTAMFGLVPNSRGDGAGLATPDERARTLDALRIDFGDAP----PSAGHGRPHVRWLPPF 223

Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSF 348
              +    +      +  +    +    E        +   P      +    F+   + 
Sbjct: 224 IDPVSGERRIRIAAQAQVDGEPFAVLVTEYAPDY--LLSWVPS----NAADGTFFVTTAD 277

Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
             L         + A     L         +A +PV         +     L    W   
Sbjct: 278 NRLVTAGPGVAHDDARIARLLALDVAREPGDADEPVFR----GGHVVFRGTLDKTGWTLA 333

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPED------------VDTRINKRKMEIEVMQL-C 455
            +L+ T I    A +    +  + +                +     + +   +   L  
Sbjct: 334 YALSWTHIVATVALRAGLLLGASLLTIAIMWILLVRFHHRVLTGVYARSQRVFDSESLCR 393

Query: 456 SILEATSDGIAIINR-EGIILSTNRAVSKL---FGYPVEDILRKPFTVFLEQNTPSVMNH 511
           S++E +  G+ +I+R +G  +  +  +++     G     +  +    +    + +    
Sbjct: 394 SVIEMSPIGLGLISRADGRFMLVSPVLAERVARLGCDCGTLSAQILAQYRAGASNAPFQI 453

Query: 512 YL----TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQE 567
            L     +  +      L    +                +   S    + + D++  +Q 
Sbjct: 454 ELVLPDAQAAAGADAPPLHLEVIARDA------------RYQASDVLIVAVVDVTAKRQL 501

Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
             KL  A + A+  ++ KS FLA +SHEIRTPL  I+G  E+++                
Sbjct: 502 VQKLEEAVRAADSANAAKSSFLAAMSHEIRTPLNVILGNLELLERSTLDLP----QRSRV 557

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
             +  + + +L++V+ +LD +K+E+G M +          ++  +      A  K + + 
Sbjct: 558 QTLRNAASGLLELVSGILDFTKVEAGAMPVESIEFDAIGVIARELGAYAPVAKAKGLPLF 617

Query: 688 TSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVR 742
              A +  + +  D   + Q+  N+LSNAI FT + G +         E    E+ + + 
Sbjct: 618 CEIAASASQRMRGDPTRLAQVFGNLLSNAIKFT-AHGHVTARVRAVRGECGTAELAIAIE 676

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG+G+ + +L K  + F Q+  +   R  GTGLGL L   +V A  G+  + S P  G+
Sbjct: 677 DTGIGIGSADLHKLFRAFSQVDATIARRYGGTGLGLALCDRLVTAMGGRIAVTSAPGAGS 736

Query: 803 LIEIIFPLYDTSHP 816
              +  PL     P
Sbjct: 737 CFTVRLPLGLDVEP 750


>gi|116621909|ref|YP_824065.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116225071|gb|ABJ83780.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 573

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 75/414 (18%), Positives = 153/414 (36%), Gaps = 35/414 (8%)

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
               +          +G    +   R      +       ++LE+ S  I   ++ G I+
Sbjct: 37  RMSREGRGAGNESSGSGAAARETRERPTVPGFQAPAEMAGALLESASQAIVSADQAGTIV 96

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGST 533
             NR   ++FGY  E++L  P  + L +   +       E L     + +          
Sbjct: 97  LVNRQAEEMFGYHREELLGSPIEILLPEVKRAAHVQMRAEYLRRQTIRPMGSGLDLSARR 156

Query: 534 KEEKLLSLRIIIKKLPFSSCYSLT--MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
           K+     + + +  +  ++       + DIS+ K+ + +L        ++          
Sbjct: 157 KDGSQFPVEVGLSHIKTANGVFAIAFISDISQRKRLEQQL-----QLAQKMEAVGRLAGG 211

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           ++H+    LT I G+  +I  +           ++   I  +      + + LL  S+  
Sbjct: 212 IAHDFNNMLTVIAGYGSMIMEKLQ---AQDPLRDHVEEIVAATTRAAALTSQLLAFSR-- 266

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
             +     +P++L+E ++    +++     + I +     + +  + AD   V+Q  +N+
Sbjct: 267 --QGRTRPQPINLNELIANIEKMLRRLI-REDIALELILQDGLLSVKADPDRVEQAIVNL 323

Query: 712 LSNAIHFTPSGGQIIISTT--------------HTSNEEVILRVRDTGVGMTNYELEKAM 757
           + NA    P  G+I + T                   E  ++ V DTG GM    + +  
Sbjct: 324 VVNARDAMPGAGRITVETANVYLDESYARSHVGVQPGEFAMIAVSDTGTGMDPEVMRRIF 383

Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
           +PF         +G+G GLGL     MV    G  +++S P KGT  +  FP+ 
Sbjct: 384 EPFFTTKA----QGKGVGLGLATVYGMVKQAGGGIWVYSEPGKGTTFKAYFPIA 433



 Score = 45.8 bits (107), Expect = 0.031,   Method: Composition-based stats.
 Identities = 17/196 (8%), Positives = 41/196 (20%), Gaps = 17/196 (8%)

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
             H     +        +E++ L       T        ++  G    +S         R
Sbjct: 4   RPHDKSRYRERDRREKANEKNHLAGV---RTNFRGGRMSREGRGAGNESSGSGAAARETR 60

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIE----- 361
             P++  +    E                   G +   N     +  Y   + +      
Sbjct: 61  ERPTVPGFQAPAEMAGALLESASQAIVSADQAGTIVLVNRQAEEMFGYHREELLGSPIEI 120

Query: 362 ---------IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
                         +  L    +    +   +   R D +       L  I+        
Sbjct: 121 LLPEVKRAAHVQMRAEYLRRQTIRPMGSGLDLSARRKDGSQFPVEVGLSHIKTANGVFAI 180

Query: 413 MTFIPFEKANQFPENM 428
                  +  +  + +
Sbjct: 181 AFISDISQRKRLEQQL 196



 Score = 41.6 bits (96), Expect = 0.61,   Method: Composition-based stats.
 Identities = 28/267 (10%), Positives = 71/267 (26%), Gaps = 10/267 (3%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTW----YG 145
           D  G +  ++ +  +  G +  +++G  +  +   +    +  +     R+ T      G
Sbjct: 90  DQAGTIVLVNRQAEEMFGYHREELLGSPIEILLPEVKRAAHVQMRAEYLRRQTIRPMGSG 149

Query: 146 KTT-LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND-PRALGKRLDKK 203
                   +G+    P+++    I + N  F+      I    R++     A       +
Sbjct: 150 LDLSARRKDGSQF--PVEVGLSHIKTANGVFAIAFISDISQRKRLEQQLQLAQKMEAVGR 207

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
            +        +       Y     +       +++ V  +         +          
Sbjct: 208 LAGGIAHDFNNMLTVIAGYGSMIMEKLQAQDPLRDHVEEIVAATTRAAALTSQLLAFSRQ 267

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
                 P   +    N+ +  ++     +          LS +  P          NL  
Sbjct: 268 GRTRPQPINLNELIANIEKMLRRLIREDIALELILQDGLLSVKADPD--RVEQAIVNLVV 325

Query: 324 ETVDKCPIPFFVYSHGNLFYANPSFLL 350
              D  P    +       Y + S+  
Sbjct: 326 NARDAMPGAGRITVETANVYLDESYAR 352


>gi|303236189|ref|ZP_07322788.1| PAS domain S-box protein [Prevotella disiens FB035-09AN]
 gi|302483604|gb|EFL46600.1| PAS domain S-box protein [Prevotella disiens FB035-09AN]
          Length = 485

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 77/377 (20%), Positives = 170/377 (45%), Gaps = 31/377 (8%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            K+++    + +I+++  + I  ++ +  +   N     +     ED++ K       +N
Sbjct: 129 SKLKVSKQYIETIIDSIDEPIVCLDHKLTLYFINNEALSILNLRCEDVVGKSAQETAMRN 188

Query: 505 TPSVMNHYLTEILSLDLRQTLEKIT----LGSTKEEKLLSLRIIIKKLPF------SSCY 554
              ++   L  +    + +T EK T    + +  +E    ++ +  ++         S  
Sbjct: 189 D--LLRRLLVGMDRHKVHETDEKKTEPLKIYADNKESYFQVKYLPVRMTDHEGSIKESGT 246

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
            + + +I+E                K    K+ F++ +SHE++TP++AI+   +++ + R
Sbjct: 247 VIMLKNITE--------------FHKLDVAKTTFISTISHELKTPISAILMSEQLLADNR 292

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
            G L N    E ++ I  +G  +L I  +LL+++++ESG + L        E +  AI  
Sbjct: 293 VGGL-NQEQKELSDSIRENGERLLSITGELLNMTQVESGVLQLKPHITRPIELIDYAIKA 351

Query: 675 VQLYANEKRILIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
            Q+ A++  I I   +    I ++  D   +  +  N+LSNAI ++    ++ I      
Sbjct: 352 NQVQADKFHINIEVDYPKEKINKLYVDSEKIAWVLTNLLSNAIRYSSENDRVTIGALQQD 411

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
              V+L V+D G G+     +   + + ++P +   + +G+GLGL +++  V+A+ G   
Sbjct: 412 EHHVMLYVQDFGRGIDPRYHDSIFERYFRVPGT---KIQGSGLGLSISRDFVEAHNGTLT 468

Query: 794 IFSTPAKGTLIEIIFPL 810
           + S   KG+   +  P+
Sbjct: 469 VESELGKGSKFVVSLPV 485


>gi|227113362|ref|ZP_03827018.1| phosphate regulon sensor protein [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 440

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 64/371 (17%), Positives = 131/371 (35%), Gaps = 36/371 (9%)

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
           +  S  E+  D + I   EG I   N     L  +   +   +     L     +     
Sbjct: 99  RFRSGAESLPDAVVITTEEGTIFWCNHLAQHLLNFRWPEDNGQNILNLLRYPEFTNYM-- 156

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572
                     Q   +           +  R++           + + DI++  Q +    
Sbjct: 157 --------KGQDFSRPLTLQLNNSHHVEFRVMPY---SEGQLLMVVRDITQMHQLEG--- 202

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
                       + +F A VSHE+RTPLT + G+ E+++ +        +     N +  
Sbjct: 203 -----------ARRNFFANVSHELRTPLTVLQGYLEMMQEETLDAALRGKA---LNTMQE 248

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
               +  +V  LL +S+IE+       E V +   +       Q  +  +   I      
Sbjct: 249 QTRRMDGLVKQLLTLSRIEAATAIDLNEKVDIPLMLRVLQREAQTLSQGRH-EIVFRVNE 307

Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752
           ++ R+  +   ++    N++ NA++ TP+G +I +            +V D G G+    
Sbjct: 308 SL-RVFGNEEQLRSAVSNLVYNAVNHTPAGTRIEVCWQKIPQG-AQFQVSDNGPGIAAEH 365

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP--- 809
           L +  + F ++  ++  +  G+GLGL + K  +  +  +  I S    G+      P   
Sbjct: 366 LPRLTERFYRVDKARSRQTGGSGLGLAIVKHALSHHDSRLEIMSEDGLGSRFVFTLPNRL 425

Query: 810 LYDTSHPHDCI 820
           +   S   + +
Sbjct: 426 IVPASLAENTV 436


>gi|116330675|ref|YP_800393.1| sensor histidine kinase of a two component response regulator
           [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
 gi|116124364|gb|ABJ75635.1| Sensor histidine kinase of a two component response regulator
           [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
          Length = 865

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 107/807 (13%), Positives = 236/807 (29%), Gaps = 79/807 (9%)

Query: 44  PCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELP 103
                             V +  Y   E  F+FDP                   +++   
Sbjct: 84  EILAQEGDCGNLSPESPGVESIFYKLPEPAFLFDPSTL------------RFLAVNDAAI 131

Query: 104 KTIGNYAFKMIGMRLCDVSDILH-IDPNNHIGD-LLKRQNTWYGKTTLWPIEGTNLYVPI 161
              G    +  GM L ++       D    I +   +      G    W  +   LYV I
Sbjct: 132 HLYGFSREEFAGMNLLEIRPEEDRADMETAIQNVAKETGIRSRGVWRHWRKDKKFLYVKI 191

Query: 162 DLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEK 221
               + +            F ++ +    ++       L +      E +    S+    
Sbjct: 192 TTNRISLGDS---------FAVLTILTNVSETIETSYALRQI---RAEKQSIIESMSDRY 239

Query: 222 YDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLN 281
           + +          R         +      ++        + S                 
Sbjct: 240 FALSKDWRFISANRQSLITLGKPKEELIGRNIWDLYPGASVRSFRDKFELAVRTRKPITF 299

Query: 282 QYTKKQYFGTLQNNSKESFEYLSHR-NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN 340
           +Y   +    ++       E +S      +     D  +N+  E   K P    V     
Sbjct: 300 EYKIIETGNVMEFRVFPFEEGVSVFFQDITEKRKRDSEQNILKEIALKIPKASSVKESFE 359

Query: 341 LFY--------ANPSFLLLT--KYKSVDDIEIAGGLSTLLDAPKL--------SDNNAIK 382
           + +         N +           +++              ++             I 
Sbjct: 360 ILFETICKGTFWNFAQTWRFQNGKIVLEENSPWYSTEATFLRYRIACFETGFSPGEGLIG 419

Query: 383 PVMLYRSDRTCIAASARLHTIQ-----------------WNRENSLAMTFIPFEKANQFP 425
            V      R         +  +                      +  + F    + +   
Sbjct: 420 EVFSTHKIRFVNDVQKEKNFKRTGFVFQTGIRSWIAIPLRTGHETYVLEFCSQIELDSVN 479

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
             +    +  + ++     ++ E E        + + D   I   +G I+  N A  ++ 
Sbjct: 480 SYIQMFELISDQIEVLFKNKESEEEKDHF---FKLSGDMFQISTLDGQIIERNHAWEEVL 536

Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
           GY  E++        +  N  + M + L  +       ++       TK  +  ++    
Sbjct: 537 GYTREELNGIDLVKIVHPNDRNKMLNALVSVRKYGKNLSIA--LRYVTKHGRTRTILWKT 594

Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
              P       T  DI+E +  + +L +  K  ++ +S   DF    SH+++ PL  I  
Sbjct: 595 IVSPEHRLVYTTGKDITEIQNTQLQLENMAKELQRSNSDLEDFAFIASHDLQEPLRKIKA 654

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
           F + +  +      +   ++Y   +  S + + +++  LL  S+I+S           L 
Sbjct: 655 FGDRLLKRN--SNLDSESVDYLQRMFFSAHRLSNLIEGLLSYSRIKSRAKPFQL--FDLR 710

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP-SGGQ 724
           + + ++I  +++Y  EK   +     + I     D   +  +  N++ N I F      +
Sbjct: 711 KILKDSIGDLEIYIKEKNARV---VDSEIGFAWCDPFQMGTVFQNLIKNGIKFNQSENPE 767

Query: 725 IIISTTHT--SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
           + I           + +   D G+G       K    F ++ +  +   EG G+GL + K
Sbjct: 768 VNIRCIPHPIEPNWIQITFADNGIGFDKKHDGKIFTLFQRLHS--REDYEGNGIGLAVCK 825

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFP 809
            +++ + G+ Y  S   KG+   +  P
Sbjct: 826 KIIEFHGGRIYAESVLQKGSTFYVDLP 852


>gi|114328501|ref|YP_745658.1| cytosine permease [Granulibacter bethesdensis CGDNIH1]
 gi|114316675|gb|ABI62735.1| cytosine permease [Granulibacter bethesdensis CGDNIH1]
          Length = 1168

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 78/277 (28%), Positives = 137/277 (49%), Gaps = 6/277 (2%)

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
            + +       +L M++I   ++   KL  AK+ AE  +  KS F+   SHE+R+PL AI
Sbjct: 652 HVAREESRRQTALLMNEIRAHRRTDAKLQKAKEAAESANLAKSRFVVGASHELRSPLNAI 711

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +G+++++          PR+      + RSG  +  ++  LLDISKIE+G++++  + V 
Sbjct: 712 LGYAQLM---DGDETLPPRWQRAIGIMRRSGEHLAGLIEGLLDISKIEAGRIDVARDAVR 768

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSG 722
           L + + + +S+ ++ A  K I         +P ++  D R ++QI +N+LSNAI FT  G
Sbjct: 769 LGDFLDQIVSMFRIQAEAKGIDFIFDRPETLPDQVYTDERRLRQILINLLSNAIKFTRYG 828

Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
            ++       S     L + DTG+G+   ELE+  +PF +   +      G GLGL + K
Sbjct: 829 -RVTFRVRWRSQI-ADLDITDTGIGIDEQELERIFEPFHRTSGALHASMPGIGLGLTITK 886

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819
            +V    G   + S   +G+   I   L +     + 
Sbjct: 887 LLVQILGGDITVQSKLGEGSTFHIRLMLSEVQQSTEA 923


>gi|91786469|ref|YP_547421.1| periplasmic sensor hybrid histidine kinase [Polaromonas sp. JS666]
 gi|91695694|gb|ABE42523.1| periplasmic sensor hybrid histidine kinase [Polaromonas sp. JS666]
          Length = 1127

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 72/267 (26%), Positives = 134/267 (50%), Gaps = 15/267 (5%)

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            +I   ++    L  AK++AE  +  K+ ++A ++HE+RTPL +I+G+S+++        
Sbjct: 649 REIEAHQRTDAALQTAKELAEAANQAKTRYVAGMTHELRTPLNSILGYSQILLKSEALAN 708

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
                 E    I RSG  +L +V+ LLD+++IE+G++ L   P+ L + +   +++V+  
Sbjct: 709 TP---REAVQTIQRSGEHLLALVDGLLDLARIEAGRLRLEPTPLPLPDFLDGLVNMVRPQ 765

Query: 679 ANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737
           A  K +    + +  +P  + AD + ++QI +N+LSNA+HFT +G  + +       E +
Sbjct: 766 AEAKDVDFIYTHSGRMPAWVQADAKRLRQIIINLLSNAVHFTDTGS-VTLHVDCR-REVI 823

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
              V DTG+G+   + ++   PF +    ++    GTGLGL +   +     G   + S 
Sbjct: 824 RFDVVDTGIGIAPQDQQRIFLPFERGAAGRRRGEPGTGLGLTITGLLTALMGGDLSLQSE 883

Query: 798 PAKGTLIEIIF---------PLYDTSH 815
             KG+   +           PL D  H
Sbjct: 884 QGKGSTFSVRLYLREIDDPGPLADPPH 910


>gi|320323404|gb|EFW79492.1| response regulator, sensor histidine kinase component GacS
           [Pseudomonas syringae pv. glycinea str. B076]
          Length = 917

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 76/243 (31%), Positives = 140/243 (57%), Gaps = 8/243 (3%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  A+K A + S  KS+FLA +SHEIRTPL  I+GF+ +++     P    R  +Y   
Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSELTP----RQFDYLGT 325

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I++S + +L I+N++LD SKIE+GK+ L   P +L + + + ++++   A+ K++ + + 
Sbjct: 326 IEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSL 385

Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQI---IISTTHTSNEEVILRVRDTG 745
              + P  +  D   ++QI  N++SNAI FT  G  +   ++      + ++ + V+DTG
Sbjct: 386 VYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAMLEDETEEHAQLRISVQDTG 445

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+++ ++    + F Q  NS   +  GTGLGL ++K +++   G+  + STP +G+   
Sbjct: 446 IGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFW 505

Query: 806 IIF 808
           I  
Sbjct: 506 ISL 508


>gi|224367709|ref|YP_002601872.1| two-component hybrid sensor and response regulator histidine kinase
           [Desulfobacterium autotrophicum HRM2]
 gi|223690425|gb|ACN13708.1| two-component hybrid sensor and response regulator histidine kinase
           [Desulfobacterium autotrophicum HRM2]
          Length = 998

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 76/530 (14%), Positives = 156/530 (29%), Gaps = 74/530 (13%)

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYSHGN--LFYANP----SFLLLTKYKSVDDIEIAG- 364
               ++ E      +D      +V       + + N         +T       ++    
Sbjct: 362 RKSLEQNETRLRLLMDSLDAVVYVKDMDTHDVLFINQYGKKQIGDITGTTCWQTMQKDQN 421

Query: 365 -----GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
                     L   +                        R   I+W     + +      
Sbjct: 422 GPCSFCTDKYLLDDQGDPQGIYTWEFQNTITGR--WYYIRDRAIKWIDGRLVRL------ 473

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
                        I  +  + +    K+  E  +L   L +  DG+   + +  I   N 
Sbjct: 474 ------------EIATDITEKKETDAKIAEERERLAVTLRSIGDGVITTDTQSRICLMNT 521

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTP---SVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
               L G+       +  T               + + ++L+      +       +K  
Sbjct: 522 VAETLTGWSTTQAAGRSLTEIFNIVDMTTDQACKNPVEKVLASGETINMASPMTLISKNG 581

Query: 537 KLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
               +      +           L   D++E    + +L    K+              +
Sbjct: 582 DRKHIADSASPILDMQGNVTGVVLVFRDVTEQLCTEQELRKITKL-----ESIGVLAGGI 636

Query: 593 SHEIRTPLTAIIGFSE-VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           +H+    L+AIIG  +  + +         R   +      +     ++   LL  SK  
Sbjct: 637 AHDYNNILSAIIGNIQLTLMDSNL----TDRTQRFIKQALDASLRAKNLTIQLLTFSK-- 690

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
            G   +     SL   + + +           I    SF +++  +  D   + Q+   +
Sbjct: 691 -GGRPVKKTA-SLVRLIRDFVDS---TCRASNIACHCSFPDDLWPVEIDRSQMGQVVQKL 745

Query: 712 LSNAIHFTPSGGQIIISTT------------HTSNEEVILRVRDTGVGMTNYELEKAMKP 759
           + NA +  P+GG I +S                ++  V + ++DTGVG+    L+K   P
Sbjct: 746 IQNACNAMPNGGTIEVSCQNVRSSPTKHPDIAPASNRVEMSIKDTGVGIAENLLDKIFDP 805

Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +            G GLGL +  ++V  + G+  + STP KG+   +  P
Sbjct: 806 YF------STNQPGRGLGLAICHSIVTQHNGQISVKSTPGKGSTFTVHLP 849



 Score = 48.9 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 42/405 (10%), Positives = 98/405 (24%), Gaps = 23/405 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH----IGDLLKRQNTWY 144
            D    +  ++       G    +  G  L ++ +I+ +  +      +  +L    T  
Sbjct: 510 TDTQSRICLMNTVAETLTGWSTTQAAGRSLTEIFNIVDMTTDQACKNPVEKVLASGETIN 569

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
             + +  I        I  +A PI       +G     +              +++ K  
Sbjct: 570 MASPMTLISKNGDRKHIADSASPILDMQGNVTGV--VLVFRDVTEQLCTEQELRKITKLE 627

Query: 205 SHLHEIKKGHSSVEK-EKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
           S                   I + Q       + ++     +         K     LLT
Sbjct: 628 SIGVLAGGIAHDYNNILSAIIGNIQLTLMDSNLTDRTQRFIKQALDASLRAKNLTIQLLT 687

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
             +   P ++    + L +                SF           S      + L  
Sbjct: 688 FSKGGRPVKKTASLVRLIRDFVDSTCRASNIACHCSFPDDLWPVEIDRSQMGQVVQKLIQ 747

Query: 324 ETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
              +  P       +G     +   +  +  K  D    +  +   +    +     +  
Sbjct: 748 NACNAMP-------NGGTIEVSCQNVRSSPTKHPDIAPASNRVEMSIKDTGVGIAENLLD 800

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
            +      T          I  +                +            +  ++   
Sbjct: 801 KIFDPYFSTNQPGRGLGLAICHSIVTQHNGQISVKSTPGKGSTFTVHLPASTQRSESTTQ 860

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
           ++K   E  +L          I I++ E ++    RA+    G+ 
Sbjct: 861 RKKSVQEARKLR---------ILIMDDEEMLRDLTRAMLTDLGHD 896


>gi|188582056|ref|YP_001925501.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium populi BJ001]
 gi|179345554|gb|ACB80966.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium populi BJ001]
          Length = 422

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 76/366 (20%), Positives = 154/366 (42%), Gaps = 36/366 (9%)

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
            ++L    D + +++R  +++  N A  +L        LR P +  L       +   + 
Sbjct: 64  EALLANIPDPVILVDRRVVVIEANPAARRLL---PGLKLRHPLSFSLRAPD---VLDGIE 117

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-----YSLTMHDISEWKQEKN 569
           E+L       +          E+   ++I    +P +         L + D++E ++ + 
Sbjct: 118 EVLRTG--SAVRTEYATRVPTERAFEVQIGALPIPDAPGGGEANVVLFLRDLTEARRLE- 174

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE-YAN 628
                        + + DF+A  SHE+RTPL A++GF E ++        + R  E +  
Sbjct: 175 -------------AMRVDFVANASHELRTPLAALLGFIETLQG---PAKEDARAREQFLG 218

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            +      +  +++DLL +S+IE  +       V L     + + +    A E+ + +  
Sbjct: 219 IMRTQAQRMTGLIDDLLSLSRIELHEHVAPTRIVDLGRIARQMVEMQAPLARERGVALTV 278

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-----EVILRVRD 743
              +    +L D   + ++  N++ NA+ +  SGG +++S            ++ LRVRD
Sbjct: 279 ERPDIPLPVLGDRDELLRVVENLVENAVKYGNSGGVVVVSLHRIEGAAGRGAQIELRVRD 338

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
            G G+    + +  + F ++  +   +  GTGLGL + K  ++ + GK  I S P  GT 
Sbjct: 339 EGPGIAAEHIPRLTERFYRVDTASSRQQGGTGLGLAIVKHTLNRHRGKLIIESEPGHGTT 398

Query: 804 IEIIFP 809
           + +  P
Sbjct: 399 VRVSLP 404


>gi|169334065|ref|ZP_02861258.1| hypothetical protein ANASTE_00458 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258782|gb|EDS72748.1| hypothetical protein ANASTE_00458 [Anaerofustis stercorihominis DSM
           17244]
          Length = 734

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 91/310 (29%), Positives = 159/310 (51%), Gaps = 19/310 (6%)

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRI--IIKKLPFSSCYSLT--MHDISEWKQE 567
           ++  ++  D    +E            +  R   I+ ++     Y +T  + ++S+ K E
Sbjct: 396 FIRALIEHDGILEIEYQCNYK---GSNIWNRAGYILSEIRDDKPYMVTVTIRNVSDIKVE 452

Query: 568 KNKLSHAKKIAEK----ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
           +   + A K A +     ++ K+DFL+ +SH+IRTP+ AI+G + + KN +       + 
Sbjct: 453 QEAHNQALKDAYEMARNANNAKTDFLSSMSHDIRTPMNAIMGMTVIAKNNKD---NVEKL 509

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            +  + I+ S N +LD++ND+LD+SKIESGK+ L+ EP+ LD  + + ++++   A +K 
Sbjct: 510 EDCLDKIETSSNHLLDLINDVLDMSKIESGKVTLNEEPLDLDSIIDDVLNIILPTARDKH 569

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-----VI 738
           I ++ +   N   +  D+  + QI LNILSN++ FTP  G I I     + E        
Sbjct: 570 ITVKLNKEINHAFVQGDVLRINQIFLNILSNSVKFTPKNGNIQIFIREITPEYKNYISYE 629

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
            +  D G+GM+    +K   PF +   S     EGTGLG+ + K +VD   G+ Y+ S  
Sbjct: 630 FKFIDNGIGMSEEFKDKIFTPFARSEESIIKNVEGTGLGMSIVKNIVDMMNGEIYVKSKI 689

Query: 799 AKGTLIEIIF 808
            KG+   +I 
Sbjct: 690 NKGSEFTVIL 699


>gi|146283013|ref|YP_001173166.1| sensor histidine kinase/response regulator GacS [Pseudomonas
           stutzeri A1501]
 gi|145571218|gb|ABP80324.1| sensor histidine kinase/response regulator GacS [Pseudomonas
           stutzeri A1501]
          Length = 906

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 78/244 (31%), Positives = 140/244 (57%), Gaps = 10/244 (4%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  A+K A + S  KS+FLA +SHEIRTPL  I+GF+++++     P    R  +Y   
Sbjct: 257 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTQLLQKSDLTP----RQQDYLGT 312

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I++S + +L I+N++LD SKIE+GK+ L   P +L + + + ++++   A+ K++ + + 
Sbjct: 313 IEKSADSLLGIINEILDFSKIEAGKLVLDTIPFNLRDLIEDTLTILAPAAHTKQLELVSL 372

Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDT 744
              + P  ++ D   +KQ+  N++SNAI FT  G  I +      +     ++ + V+DT
Sbjct: 373 VYRDTPLSLVGDPLRLKQVLTNLISNAIKFTNEG-TIAVRAMVEDDNAERAQLRISVQDT 431

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G+T+ +L    + F Q  NS   +  GTGLGL ++K +++   G+  + S P +G+  
Sbjct: 432 GIGLTDQDLRALFQAFSQADNSMSRQPGGTGLGLVISKRLIEQMGGEIGVDSIPDEGSEF 491

Query: 805 EIIF 808
            I  
Sbjct: 492 WISL 495


>gi|229101999|ref|ZP_04232712.1| hypothetical protein bcere0019_11640 [Bacillus cereus Rock3-28]
 gi|228681386|gb|EEL35550.1| hypothetical protein bcere0019_11640 [Bacillus cereus Rock3-28]
          Length = 466

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 68/229 (29%), Positives = 123/229 (53%), Gaps = 5/229 (2%)

Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
           + +FLA VSHE+RTPL+ I G+SE I +   G    P+  +    I +  + +  +V+DL
Sbjct: 239 RKEFLANVSHELRTPLSYIKGYSEAILD---GVAKGPQQEKVTQLIHKEADRMQRLVHDL 295

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704
           LD++++E     L  +P+   + + + +   +L   EK++ I T+    I  ++ D   +
Sbjct: 296 LDLAQLEGEHFPLKKQPIVFSQLIEDVLDTYELKFIEKKLRISTNLNPEII-VMIDEDRM 354

Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764
           +Q+  N+L NAI +T   G III+     +    L+++DTG+G+    LE   + F ++ 
Sbjct: 355 QQVLHNVLDNAIRYTNQNGNIIITLEQIDD-YCELKIKDTGIGIDAEHLENLGERFYRVD 413

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
            ++  +  GTGLGL + + +V  + G++ I S   KGT + I   + D 
Sbjct: 414 KARSRQHGGTGLGLAIVRQIVHIHDGEWKIESEKGKGTTVFIKLKIQDE 462


>gi|56962996|ref|YP_174723.1| two-component sensor histidine kinase [Bacillus clausii KSM-K16]
 gi|56909235|dbj|BAD63762.1| two-component sensor histidine kinase [Bacillus clausii KSM-K16]
          Length = 539

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 79/500 (15%), Positives = 185/500 (37%), Gaps = 30/500 (6%)

Query: 313 AYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
              +E +      ++       F    G     N   L L + ++VD             
Sbjct: 64  QESEEEKEKIDTLINSMVDFVNFKDGEGRWIQTNDYGLKLYQLENVDYRGKKDSELAAYS 123

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
                     +       +R     +  +  +            I     ++  +     
Sbjct: 124 KASREPLLYCEHTDNLTWERGETTRTEEVFPM--KDGTKKTFDTIKTPIYDENGKRKGLV 181

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
            I  +  + +  ++++    ++  ++ +   + +  I+  G I+  N    ++ GY  ED
Sbjct: 182 VIGRDITERKKAEKQLAESELRYKALFDHNPELVYRIDLHGNIVDLNDKFMQVTGYNQED 241

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS--LRIIIKKLP 549
            L K    +++ +    +   L ++          ++ +     ++++     + I    
Sbjct: 242 ALGKSILTYVQPDDHERLRWKLEQVKLTRKAHQCNQVRINHRYGDRVIVNCASVPIIIDN 301

Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                +    +I++  + + KL   +K+A        +  A ++HEIR PLT++ GF ++
Sbjct: 302 ELVGITGYATNITKIIETEEKLRTTEKLAV-----VGELAAGIAHEIRNPLTSLRGFVQL 356

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
            +++      NP +      +      +  I ++LL +S+ +     + F+  +L + + 
Sbjct: 357 FQDE--SKENNPLHR----IMLDELERINTIASELLVLSRPQ----EVAFQRCNLRQVLG 406

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
           + I L+   +      +       +  +  D   +KQ+ +N++ NA     SG   I+  
Sbjct: 407 DVIQLMGTNSQLNGATLSLQAEEGL-SLECDPNQLKQLFINVVKNAA---ESGASAIVVR 462

Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
              S  ++ + V D G G++   +E+  +PF         +  GTGLGL ++  +V+A+ 
Sbjct: 463 AFPSGTQICVAVEDNGCGISADRIERLGEPFY------SQKERGTGLGLTISHKIVEAHH 516

Query: 790 GKFYIFSTPAKGTLIEIIFP 809
           G     S    GT + I  P
Sbjct: 517 GAIQYKSELGTGTTVFIALP 536



 Score = 41.9 bits (97), Expect = 0.49,   Method: Composition-based stats.
 Identities = 16/132 (12%), Positives = 32/132 (24%), Gaps = 10/132 (7%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI------GDLLKRQNTW 143
           D  G   + ++   K          G +  +++          +          +R  T 
Sbjct: 88  DGEGRWIQTNDYGLKLYQLENVDYRGKKDSELAAYSKASREPLLYCEHTDNLTWERGETT 147

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
             +      +GT      D    PIY  N +  G    G                  + +
Sbjct: 148 RTEEVFPMKDGTKK--TFDTIKTPIYDENGKRKGLVVIG--RDITERKKAEKQLAESELR 203

Query: 204 FSHLHEIKKGHS 215
           +  L +      
Sbjct: 204 YKALFDHNPELV 215


>gi|260772841|ref|ZP_05881757.1| signal transduction histidine kinase [Vibrio metschnikovii CIP
           69.14]
 gi|260611980|gb|EEX37183.1| signal transduction histidine kinase [Vibrio metschnikovii CIP
           69.14]
          Length = 578

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 84/305 (27%), Positives = 141/305 (46%), Gaps = 17/305 (5%)

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK------ 568
            +++    QT + + L     +   SL        F       ++DI   ++ +      
Sbjct: 134 ALITGIQTQTSDSVLLLLGGRKGQFSLETKATLQRFRPLLERAINDIEHKEELQSLVRIK 193

Query: 569 -NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
            ++L  A++ AE  +  KS FLA +SHE+RTPL A++G  +V++        N   ++  
Sbjct: 194 THELYIAQQQAEHANQAKSQFLAMMSHELRTPLNAVLGLIDVLRED-----SNRSQLDLL 248

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
             ++ S  L+L I+ND+LD+S+IESG   L    V L + +  A+S        K I   
Sbjct: 249 EQMENSAELLLVIINDILDLSRIESGHFKLQCHWVHLHKKLVHALSYHHKACVTKGIRFN 308

Query: 688 TSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVILRVRDTG 745
              +  +      D   + QI  N++ NAI FT +G   + +ST      E+++ V DTG
Sbjct: 309 VRTSICDHYEYWVDPVRLMQILFNVIGNAIKFTEAGSVDVRLSTAR---NELVIHVEDTG 365

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+    +E    PF Q  +S      GTGLGL + K +V+   G   + S   +G+   
Sbjct: 366 IGIEPERIEHLFSPFIQADSSITRHYGGTGLGLAITKHLVELMKGTISVSSCLGQGSHFI 425

Query: 806 IIFPL 810
           I  P+
Sbjct: 426 IRLPV 430


>gi|261196988|ref|XP_002624897.1| DRK1 histidine kinase [Ajellomyces dermatitidis SLH14081]
 gi|239596142|gb|EEQ78723.1| DRK1 histidine kinase [Ajellomyces dermatitidis SLH14081]
          Length = 1287

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 76/255 (29%), Positives = 130/255 (50%), Gaps = 12/255 (4%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           +S  +    + + A++ AE  +  KS+FLA +SHEIRTP+  IIG +++  +        
Sbjct: 683 VSNLRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDD---LK 739

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
           P   E  N +    N +L I++D+LDISKIE+ +M +   P S+   V  A+  + + AN
Sbjct: 740 PYPREMLNVVHSLANSLLTIIDDILDISKIEANRMVIEKIPFSMRGTVFNALKTLAVKAN 799

Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV-- 737
           EK + +     +++P  +  D   ++QI LN++ NAI FT  G ++ ++ + +  EE   
Sbjct: 800 EKFLSLAYQVDSSVPDYVTGDPFRLRQIILNLVGNAIKFTEHG-EVKLAISRSDREECKD 858

Query: 738 -----ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
                   V DTG+G+   +L+     F Q   S   +  GTGLGL ++K +V+   G  
Sbjct: 859 NEYAFEFSVSDTGIGIEEDKLDLIFDTFQQADGSTTRKFGGTGLGLSISKRLVNLMGGDV 918

Query: 793 YIFSTPAKGTLIEII 807
           ++ S    G+     
Sbjct: 919 WVTSEYGLGSSFHFT 933


>gi|322704067|gb|EFY95666.1| putative histidine kinase HHK2p [Metarhizium anisopliae ARSEF 23]
          Length = 2075

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 111/619 (17%), Positives = 198/619 (31%), Gaps = 103/619 (16%)

Query: 235  RMKNKVSSLTEYYAHKDDVL-KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293
            +    +S+      H DD     + +                   +             +
Sbjct: 1103 QTVADLSADPWGSIHPDDRAGYLKAWGHSLRTGEQFSRSVRIKRFDGAYRWFYARAVASK 1162

Query: 294  NNSKESFEYLSHRNHP----------SLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLF 342
            +      ++L                +     +  E       +  P   F       + 
Sbjct: 1163 DKRGVIMQFLGSYMDIHDQHIAELKAARQEEIEASEAKHRLLANLIPQIIFTATEDDAIT 1222

Query: 343  YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT 402
            +AN  +L  T  +S +D    G            D+ A   + +    +    A +    
Sbjct: 1223 FANDQWLSYTG-QSFEDSLGLG-----FMDHVHPDDLARCRIPIEHGGQPLNDAQSPPEE 1276

Query: 403  IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL--CSILEA 460
                  +S      P  +  Q    + ++G+                 +  L    + E 
Sbjct: 1277 KGHGGASSSGTQTTPTARNVQQQPAVGKSGMRNVQPALSRASSSGSESIYSLPSAELTEL 1336

Query: 461  TSDGIA--IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
               GI     +  G +  T                                         
Sbjct: 1337 ARKGIIKVTTDTSGRLSYT----------------------------------------- 1355

Query: 519  LDLRQTLEKITLGSTKEEKLLSLRIIIKKL------PFSSCYSLTMHDISEWKQEKNKLS 572
                          +K  +     I   ++        +S Y  +  DI++ K  + KL 
Sbjct: 1356 --------TEVRLRSKTGEYRWHLIRCVEIDTFDFGRGASSYFGSATDINDHKLLEAKL- 1406

Query: 573  HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
                  ++    K  FL+ +SHEIRTPL  I G    +++       N    +Y N I  
Sbjct: 1407 ------KEAMESKGRFLSNMSHEIRTPLIGISGMVSFLQDTTL----NEEQRDYTNTIQT 1456

Query: 633  SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
            S N ++ I+ND+LD+SK+++G M L +E       + +   LV   A  KR+ +      
Sbjct: 1457 SANSLIMIINDILDLSKVDAGMMKLKYEWFHTRSLIEDVNELVSTMAIAKRLELNYLVEA 1516

Query: 693  NIP-RILADLRSVKQIALNILSNAIHFTPSG---GQIIISTTH------TSNEEVILRVR 742
            ++P  +  D   ++Q+ LN++ NAI FT  G    +  + T         +   +   + 
Sbjct: 1517 DVPAWVKGDKVRIRQVLLNVIGNAIKFTAEGEVFSRCRVYTEEDPAVCNENEIMLQFAIT 1576

Query: 743  DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
            DTG G T  E E   KPF QI  S   +  G+GLGL +++ +V+ + GK    + P KG+
Sbjct: 1577 DTGRGFTKEEAELIFKPFSQIDGSSTRQHGGSGLGLVISRQLVELHGGKMEGTAIPGKGS 1636

Query: 803  LIE----IIFPLYDTSHPH 817
                      P     HP+
Sbjct: 1637 TFTFTARFTLP-SPEDHPN 1654



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/208 (12%), Positives = 46/208 (22%), Gaps = 16/208 (7%)

Query: 316  DEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
               + L    +D  P   FV     G   + N  FL        D      G        
Sbjct: 1063 PPSDRLKGLILDSLPAHVFVSLPQTGETVWVNSRFLSYRGQTVADLSADPWG-----SIH 1117

Query: 374  KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
                   +K            +   R   I+                 ++    M   G 
Sbjct: 1118 PDDRAGYLKAWGHSLRTGEQFS---RSVRIKRFDGAYRWFYARAVASKDKRGVIMQFLGS 1174

Query: 434  EPEDVDTRINK------RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
              +  D  I +       ++E    +   +       I     +  I   N       G 
Sbjct: 1175 YMDIHDQHIAELKAARQEEIEASEAKHRLLANLIPQIIFTATEDDAITFANDQWLSYTGQ 1234

Query: 488  PVEDILRKPFTVFLEQNTPSVMNHYLTE 515
              ED L   F   +  +  +     +  
Sbjct: 1235 SFEDSLGLGFMDHVHPDDLARCRIPIEH 1262



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/141 (12%), Positives = 39/141 (27%), Gaps = 10/141 (7%)

Query: 457  ILEATSDGIAI-INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
            IL++    + + + + G  +  N       G  V D+   P+   +  +  +        
Sbjct: 1072 ILDSLPAHVFVSLPQTGETVWVNSRFLSYRGQTVADLSADPWGS-IHPDDRAGYLKAWGH 1130

Query: 516  ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM----HDISEWKQEKNKL 571
             L    +    +       +                    +       DI +    +  L
Sbjct: 1131 SLRTGEQ--FSRSVRIKRFDGAYRWFYARAVASKDKRGVIMQFLGSYMDIHDQHIAE--L 1186

Query: 572  SHAKKIAEKESSHKSDFLARV 592
              A++   + S  K   LA +
Sbjct: 1187 KAARQEEIEASEAKHRLLANL 1207


>gi|322435821|ref|YP_004218033.1| multi-sensor signal transduction histidine kinase [Acidobacterium
           sp. MP5ACTX9]
 gi|321163548|gb|ADW69253.1| multi-sensor signal transduction histidine kinase [Acidobacterium
           sp. MP5ACTX9]
          Length = 987

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 88/375 (23%), Positives = 168/375 (44%), Gaps = 22/375 (5%)

Query: 450 EVMQL----CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           E  +L     +I+E+ + GI  ++ E  I S N  +  LF  P  + +R+  +  L  + 
Sbjct: 614 EFERLKDFNQNIVESINIGIFAVDLEDKIESWNAQMEVLFARPRSEAIRRHLSEILPSDF 673

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII--KKLPFSSCYSLTMHDISE 563
            +  N    +  +       +      T E +  ++ I     +        + + DI++
Sbjct: 674 LARFNAIRGDGTAHGTHTLYKFRLALPTGETRTANIAIAPLLTRNLDVVGRIILVDDITD 733

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
             Q + +L+ ++K+     S      A V+HE+ TPL  I  +++++  Q      + R 
Sbjct: 734 RIQLETQLTQSEKL-----SSIGLLAAGVAHEVNTPLAVISSYTQMLSKQLR---DDVRI 785

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
                 I +      +IVN LL+ S+  SG     F  + L++ + ++  L++      R
Sbjct: 786 APVLEKITQQTFRASEIVNGLLNFSRT-SGA---EFVSIDLNQLLRDSAILLEHQFKTAR 841

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP--SGGQIIISTTHTSNEEVILRV 741
           I +    A ++ RI  +   ++Q+ LN++ NA       S G I I+T    +++VIL +
Sbjct: 842 IRLDQELAPDLARIQGNQGKLQQVILNLMLNAKDAMQGTSTGLITIATR-NEHDQVILEI 900

Query: 742 RDTGVGMTNYELEKAMKPFGQIP-NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           RDTG G+    L +   PF     N Q  + +GTGLGL ++  ++  + GK  + S P +
Sbjct: 901 RDTGSGIEREHLHRIFDPFFTTKTNPQPGQHKGTGLGLAVSYGILQEHGGKITVDSEPGQ 960

Query: 801 GTLIEIIFPLYDTSH 815
           GT   +  P  ++ +
Sbjct: 961 GTTFRLEIPATESPN 975


>gi|238758178|ref|ZP_04619357.1| Signal transduction histidine-protein kinase barA [Yersinia aldovae
           ATCC 35236]
 gi|238703508|gb|EEP96046.1| Signal transduction histidine-protein kinase barA [Yersinia aldovae
           ATCC 35236]
          Length = 937

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 86/335 (25%), Positives = 146/335 (43%), Gaps = 17/335 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           LF Y +   +  P    +               L+  +   +             +++ +
Sbjct: 209 LFAYRLMRDVTGPIRNMVNTVDR-----IRRGQLNSRVEGHMLGELNILKNGINSMAMSL 263

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 264 AAYHEEMQQNIDQATSDLRETLEQMEIQNVELGLAKKRAQEAARIKSEFLANMSHELRTP 323

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+     Q       P   +Y   I RS N +L I+ND+LD SK+E+ K+ L  
Sbjct: 324 LNGVIGFT----RQTLKTSLTPTQTDYLQTIQRSANNLLCIINDVLDFSKLEAEKLILEH 379

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P SL  A+ E + L+   A+EK + +     N++P  ++ D   ++QI  N+L NAI F
Sbjct: 380 IPFSLRGALDEVVILLAHTAHEKGLELTLHVNNDVPEQVVGDAMRLQQIVTNLLGNAIKF 439

Query: 719 TPSGGQ---IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T  G     + +    +    +++ + DTG+G++  +  +  + F Q   S   R  GTG
Sbjct: 440 TEQGNIDILVAVRAIASQQVTLVVEIHDTGIGISESQQAQLFQAFRQADASISRRHGGTG 499

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           LGL + + +V    G     S   +G+       L
Sbjct: 500 LGLVITERLVKEMGGDISFHSQVDRGSTFRFYITL 534


>gi|169349479|ref|ZP_02866417.1| hypothetical protein CLOSPI_00197 [Clostridium spiroforme DSM 1552]
 gi|169293554|gb|EDS75687.1| hypothetical protein CLOSPI_00197 [Clostridium spiroforme DSM 1552]
          Length = 562

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 76/365 (20%), Positives = 167/365 (45%), Gaps = 37/365 (10%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           K+  + +++  IL+   +G  +++ +  +L  NR  SKL+   +E  L +    F+    
Sbjct: 231 KLNDQQIKIKGILDQMKEGFILLDEDLKVLMINRKASKLYNNTIE--LNRSIKDFVFDFK 288

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
                  L          T E+  +   K+++  +  +           +L   +I++  
Sbjct: 289 IIKALDNL----------TDEQQVVLFEKDKQYYNCYVAKV----DYGVTLLFVNITD-- 332

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY-I 624
                              + +F + VSHE++TP+T+I G+SE+++    G + + +   
Sbjct: 333 ------------HHNAMKMRQEFFSNVSHELKTPMTSIRGYSELLET---GVINDEQAAK 377

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           +  + I    + + +++ND+L IS++E+  +++   PV ++  V+E I  +Q+  +++ +
Sbjct: 378 KALDKIHTEVDNMSNLINDILMISRLENKDVDVIKHPVHIEPLVNEIIDTMQVEIDKRNL 437

Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744
            +     + I   L++ + + Q+  N+++NAI +    G I I   +     +++ V DT
Sbjct: 438 TVYKDINDIIY--LSNHQHMHQLLSNLITNAIKYNKKDGSITIK-AYEVEHNIVIEVSDT 494

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G G++  +  +  + F +    +     GTGLGL + K +V    G   + S   +GT  
Sbjct: 495 GRGISKIDQGRVFERFFRCDEGRDKETGGTGLGLAIVKHIVHYYQGNIVLTSKLDEGTTF 554

Query: 805 EIIFP 809
           +II P
Sbjct: 555 KIILP 559


>gi|86138161|ref|ZP_01056736.1| Hybrid sensory histidine kinase [Roseobacter sp. MED193]
 gi|85825188|gb|EAQ45388.1| Hybrid sensory histidine kinase [Roseobacter sp. MED193]
          Length = 763

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 82/264 (31%), Positives = 135/264 (51%), Gaps = 8/264 (3%)

Query: 555 SLTMHD-ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
              + D   E  + +  L  A + A+  +  KSDFLA +SHEIRTP+  +IG +E+I   
Sbjct: 209 VGVLEDTFVERDEREAALERACEDADIANQAKSDFLANMSHEIRTPMNGVIGMAELIMET 268

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
                 +     YA  I +SG  +L I+ND+L+ SKIE+GK+ L+  P +L  A+ + ++
Sbjct: 269 DL----DEDQQIYAETISKSGTALLTIINDILNFSKIEAGKVELNLAPFNLLTAIEDVVT 324

Query: 674 LVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSG-GQIIISTTH 731
           L+   AN K + I   +  N+P     D+  V+Q+  NI+ NA+ FT  G   + +S   
Sbjct: 325 LLSPRANAKGVEIILRYDPNLPEFFEGDVGRVRQVITNIIGNAVKFTDVGYVHVDVSGGK 384

Query: 732 TSNEE-VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
            S    + ++V DTG+G+    LE     F Q+ +      EGTGLGL ++  ++    G
Sbjct: 385 NSENYSLTIKVADTGIGIPANRLEAVFSAFEQVDSGATRSFEGTGLGLAISARLLALMGG 444

Query: 791 KFYIFSTPAKGTLIEIIFPLYDTS 814
           +  + S   +G++  +  PL    
Sbjct: 445 EVAVASKAGEGSIFTVQLPLPRAE 468


>gi|307319788|ref|ZP_07599212.1| multi-sensor signal transduction histidine kinase [Sinorhizobium
            meliloti AK83]
 gi|306894519|gb|EFN25281.1| multi-sensor signal transduction histidine kinase [Sinorhizobium
            meliloti AK83]
          Length = 1229

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 85/747 (11%), Positives = 214/747 (28%), Gaps = 62/747 (8%)

Query: 97   EISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTN 156
            E+++ +       + + +G  +              I    + +  +  +T +   +G+ 
Sbjct: 504  EVNQHVIDMFRANSREEMGGSITRYWQPALATIRRSIEARYRGEEVFQEETRVARTDGSV 563

Query: 157  LYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSS 216
            + V +   A P    ++   GF                   +  +++FS L  +   +  
Sbjct: 564  MDV-VFATAQPGAIADKSLVGFI------DITERKRAEEALRAREREFSQLVNMVPSYLW 616

Query: 217  VEKEKY-------DIFSQQSPPPHLRMKNKVSSLTE----YYAHKDDVLKTEKYPLLTSE 265
                          +     P         V  L           D    +       + 
Sbjct: 617  RLTPDGVPNFLNQRLIDFLGPDVVNANVEGVHPLAAIIGAVVHPDDKTRMSNALFHSVAT 676

Query: 266  ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS----LSAYFDEGENL 321
                  +      +      +     +++      ++    +       +       +  
Sbjct: 677  GERFSMKYRLRRADGVYRWVEGSAEPMRDEEGRILQWYGLSHDIDDIMHVEEALRNSKQQ 736

Query: 322  TPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
              + ++  P     ++  G L Y +  +         +          L       D+  
Sbjct: 737  LEQMIEAVPFSTLSFAPTGELTYVSKRYQDQAGAPGAE----IKDFDALAREVAHPDDFP 792

Query: 381  IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
                   +   T      R    +    N   +              +       +  + 
Sbjct: 793  TMFARATQGFATGQPFVNRFRR-RLKDGNYRWIEARAQPLRRADGPIVQWYFASIDIEEE 851

Query: 441  RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR------ 494
               +  +      L  ++E     I      G  +  ++ +    GY +E++        
Sbjct: 852  MRAQEALRERERFLWQLVETLPAMIDCAAPNGEPVYRSQQLRDFLGYELEELDGGAKSRL 911

Query: 495  -KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553
                   +  +  + +       L         +       + +   +      +     
Sbjct: 912  DATLDAGVHPDDLAGVKEQYARSLESGEP--YRRKHRLRRFDGEYRWIETRAAPMRDEKG 969

Query: 554  YSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKS--DFLARVSHEIRTPLTAIIGFS 607
              +       D+    + + +L  A++   +     S  +  A ++HE+  PL AI+  S
Sbjct: 970  AIVQWNVICLDVDREVRMQEELRLAQERLARAGQAASLAELSASIAHEVNQPLAAIVANS 1029

Query: 608  E-VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
                +     P+   R       + R      D+V+ +  + K    +   +   + L +
Sbjct: 1030 HACYRWLSADPVNIERAKITTERVIRDAKSAADVVSRIRALFK----QSVENRGILVLSD 1085

Query: 667  AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN---AIHFTPSGG 723
             +SEA SLV   A  +RI +      N+  +  D   V+Q+ +N++ N   A+       
Sbjct: 1086 VISEACSLVAAEALRRRIRLHIDVETNLAPVTVDRIQVQQVLVNLIRNGMEAMDAVDDNK 1145

Query: 724  QIIISTTHTSNEEVILRVRDTGVGMT-NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
             + +      + EV + + D G G+       +  +PF         +  G G+GL +++
Sbjct: 1146 TVDVRMHQVDD-EVRIEIGDNGNGVAFPE---RIFEPFFTT------KENGMGMGLAISR 1195

Query: 783  AMVDANMGKFYIFSTPAKGTLIEIIFP 809
            ++V+A+ G+ +      +G       P
Sbjct: 1196 SIVEAHGGRLWAEKNEPRGARFVFTLP 1222



 Score =  118 bits (297), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 48/550 (8%), Positives = 136/550 (24%), Gaps = 61/550 (11%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKM-------IGMRLCDVSDILHIDPNN-HIGDLLKR 139
            +   G     ++ L    G    ++       +   +  +      D     +   L  
Sbjct: 328 RLTPEGEPTFFNKRLTDFFGLDLQQLEKPNASRLVTAVQTLVHPDDADSLLQAVRRSLAT 387

Query: 140 QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199
              +  K  +   +G   Y  +D  A P+   +      + F I      +   +   K+
Sbjct: 388 GEPYSIKYRMRRADG--AYRWVDGRAEPLRDDSGTI--LQWFAISIDIDDEVRMQEALKQ 443

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSSLTEYYAHKDDVLKTE 257
            ++++  L        +       I   +       + ++  +    E+ +H  + L+ E
Sbjct: 444 SERRYRELFHYMPIGLAQIDAGKLIPMFKEMRAQGVVSLETYIDENPEFLSHALEALEVE 503

Query: 258 -------------------------KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL 292
                                      P L +   S+  +     +   +    +  G++
Sbjct: 504 EVNQHVIDMFRANSREEMGGSITRYWQPALATIRRSIEARYRGEEVFQEETRVARTDGSV 563

Query: 293 QNNSKESFEYLSHRN-----------HPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNL 341
            +    + +  +  +                      E    + V+  P   +  +   +
Sbjct: 564 MDVVFATAQPGAIADKSLVGFIDITERKRAEEALRAREREFSQLVNMVPSYLWRLTPDGV 623

Query: 342 -FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK---PVMLYRSDRTCIAAS 397
             + N   +       V+           +    +  ++  +    +    +     +  
Sbjct: 624 PNFLNQRLIDFLGPDVVNANVEGVHPLAAIIGAVVHPDDKTRMSNALFHSVATGERFSMK 683

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
            RL   +        +        ++    +   G+  +  D    +  +     QL  +
Sbjct: 684 YRL---RRADGVYRWVEGSAEPMRDEEGRILQWYGLSHDIDDIMHVEEALRNSKQQLEQM 740

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP--FTVFLEQNTPSVMNHYLTE 515
           +EA           G +   ++      G P  +I             +    M    T+
Sbjct: 741 IEAVPFSTLSFAPTGELTYVSKRYQDQAGAPGAEIKDFDALAREVAHPDDFPTMFARATQ 800

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM--HDISEWKQEKNKLSH 573
             +                  + +  R    +              DI E  + +  L  
Sbjct: 801 GFATGQPFVNRFRRRLKDGNYRWIEARAQPLRRADGPIVQWYFASIDIEEEMRAQEALRE 860

Query: 574 AKKIAEKESS 583
            ++   +   
Sbjct: 861 RERFLWQLVE 870



 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 58/542 (10%), Positives = 138/542 (25%), Gaps = 51/542 (9%)

Query: 85   FTWNIDAHGYLKEISEELPKTIGNYA-----------FKMIGMRLCDVSDILHIDP-NNH 132
            + W +   G    +++ L   +G                +IG     V         +N 
Sbjct: 614  YLWRLTPDGVPNFLNQRLIDFLGPDVVNANVEGVHPLAAIIGA----VVHPDDKTRMSNA 669

Query: 133  IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192
            +   +     +  K  L   +G  +Y  ++ +A P+          + +G+ H       
Sbjct: 670  LFHSVATGERFSMKYRLRRADG--VYRWVEGSAEPMRDEEGRI--LQWYGLSHDIDDIMH 725

Query: 193  PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDI------FSQQSPPPHLRMKNKVSSLTEY 246
                 +   ++   + E     +       ++      +  Q+  P   +K+  +   E 
Sbjct: 726  VEEALRNSKQQLEQMIEAVPFSTLSFAPTGELTYVSKRYQDQAGAPGAEIKDFDALAREV 785

Query: 247  YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
                D      +     +       +      + N    +     L+       ++    
Sbjct: 786  AHPDDFPTMFARATQGFATGQPFVNRFRRRLKDGNYRWIEARAQPLRRADGPIVQWYFAS 845

Query: 307  NHPSLSAYFDEGENLTPE----TVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVD-DI 360
                      E            V+  P        +G   Y +        Y+  + D 
Sbjct: 846  IDIEEEMRAQEALRERERFLWQLVETLPAMIDCAAPNGEPVYRSQQLRDFLGYELEELDG 905

Query: 361  EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
                 L   LDA    D+ A       RS  +      R H ++        +       
Sbjct: 906  GAKSRLDATLDAGVHPDDLAGVKEQYARSLESGEPYR-RKHRLRRFDGEYRWIETRAAPM 964

Query: 421  ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII------ 474
             ++    +  N I  +       + ++ +   +L    +A S      +    +      
Sbjct: 965  RDEKGAIVQWNVICLDVDREVRMQEELRLAQERLARAGQAASLAELSASIAHEVNQPLAA 1024

Query: 475  LSTNRAVS-KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
            +  N     +       +I R   T              ++ I +L  +    +  L  +
Sbjct: 1025 IVANSHACYRWLSADPVNIERAKITTERVIRDAKSAADVVSRIRALFKQSVENRGILVLS 1084

Query: 534  KEEKLLSLRIIIKKLPFSSCYSLTMHDIS--------EWKQEKNKLSHAKKIAEKESSHK 585
                ++S    +              D+         +  Q +  L +  +   +     
Sbjct: 1085 D---VISEACSLVAAEALRRRIRLHIDVETNLAPVTVDRIQVQQVLVNLIRNGMEAMDAV 1141

Query: 586  SD 587
             D
Sbjct: 1142 DD 1143



 Score = 81.2 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 28/333 (8%), Positives = 82/333 (24%), Gaps = 39/333 (11%)

Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANP 346
            F  L   +      L+  N     A   E E    + V+  P+    +   G   + N 
Sbjct: 281 AFSALIVAAISRQYQLALSNLQQSVATLRERERELSQIVNMVPVHIRRLTPEGEPTFFNK 340

Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
                         +             +  ++A   +   R         +  + ++  
Sbjct: 341 RLTDFFGLDLQQLEKPNASRLVTAVQTLVHPDDADSLLQAVRRSLATGEPYSIKYRMRRA 400

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
                 +        +     +    I  +  D    +  ++    +   +      G+A
Sbjct: 401 DGAYRWVDGRAEPLRDDSGTILQWFAISIDIDDEVRMQEALKQSERRYRELFHYMPIGLA 460

Query: 467 IINR----------------------------------EGIILSTNRAVSKLFGYPVEDI 492
            I+                                      +   N+ V  +F     + 
Sbjct: 461 QIDAGKLIPMFKEMRAQGVVSLETYIDENPEFLSHALEALEVEEVNQHVIDMFRANSREE 520

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS-LRIIIKKLPFS 551
           +    T + +    ++              +  ++ T  +  +  ++  +    +    +
Sbjct: 521 MGGSITRYWQPALATIRRSIEARYRG---EEVFQEETRVARTDGSVMDVVFATAQPGAIA 577

Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
               +   DI+E K+ +  L   ++   +  + 
Sbjct: 578 DKSLVGFIDITERKRAEEALRAREREFSQLVNM 610



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 15/188 (7%), Positives = 52/188 (27%), Gaps = 13/188 (6%)

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
               +  +   F+     +           +    + + +   +     +L  I+     
Sbjct: 265 TQRHKQFMLQLFLAISAFSALIVAAISRQYQLALSNLQQSVATLRERERELSQIVNMVPV 324

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKP-------FTVFLEQNTPSVMNHYLTEI 516
            I  +  EG     N+ ++  FG  ++ + +             +  +    +   +   
Sbjct: 325 HIRRLTPEGEPTFFNKRLTDFFGLDLQQLEKPNASRLVTAVQTLVHPDDADSLLQAVRRS 384

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLS 572
           L+     ++         +     +    + L   S     +     DI +  + +  L 
Sbjct: 385 LATGEPYSI--KYRMRRADGAYRWVDGRAEPLRDDSGTILQWFAISIDIDDEVRMQEALK 442

Query: 573 HAKKIAEK 580
            +++   +
Sbjct: 443 QSERRYRE 450


>gi|83643211|ref|YP_431646.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83631254|gb|ABC27221.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 893

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 68/271 (25%), Positives = 134/271 (49%), Gaps = 26/271 (9%)

Query: 559 HDISEWKQEKNKLSHAKKIAEKE--------------SSHKSDFLARVSHEIRTPLTAII 604
            +++E  + +  L  +++                   +  KS+FLA +SHEIRTP+ A+I
Sbjct: 355 REVAERIRSEEALRKSEERLRAAMKHAEHLAKAADSANKAKSEFLANMSHEIRTPMNAVI 414

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           G++E+++    G + + +   Y + I +    +L I+ND+LD+SK+ESGK+ + + P+  
Sbjct: 415 GYTELLE----GLIHDAKQKSYLDAIKKGSRALLTIINDILDLSKVESGKLRIEYAPLDP 470

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG 723
              + +   +     ++K++ +R    + +P  ++ D   ++Q+  N++ NAI FT  G 
Sbjct: 471 HRLLQDVAQIFSARISQKKLDLRIVLDDQLPHSLVLDEVRLRQVIFNLVGNAIKFTHEG- 529

Query: 724 QIIISTTH------TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
            I +            + E+ + V D+G+G+   +  +    F Q       +  GTGLG
Sbjct: 530 YISLCAKASSIPGDDDHIELEIAVEDSGIGIAQDQQARIFNAFEQHEGQSNRQYGGTGLG 589

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           L ++K +V+   G+  + S   KG+  EI  
Sbjct: 590 LAISKKLVEMMNGEIGLKSELGKGSRFEIRL 620


>gi|148264822|ref|YP_001231528.1| PAS/PAC sensor hybrid histidine kinase [Geobacter uraniireducens
           Rf4]
 gi|146398322|gb|ABQ26955.1| PAS/PAC sensor hybrid histidine kinase [Geobacter uraniireducens
           Rf4]
          Length = 897

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 88/549 (16%), Positives = 186/549 (33%), Gaps = 55/549 (10%)

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIE 361
           L  R   + +A      +      D  P+P   V         N +F         D + 
Sbjct: 238 LGFRRIDADAAALMAERDNLSSVFDATPMPMLLVDDRMEAVRVNSAFREY--CIDYDALP 295

Query: 362 IAGGLSTLL------------DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
                + L             ++P       ++ +             A +  + W   +
Sbjct: 296 DKRCGTILKCANALSEPQGCGNSPVCDSCGLMRTLQEVSRSGLSARGEATVPRLGW-GGD 354

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN 469
           +     +   +A              +  + +  +    I   +  +++E + D IA  +
Sbjct: 355 ATEAWLLYGVEAVSLDGRNHALMSFMDITERKREEILRRIRAEEFRALVENSPDAIARYD 414

Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPF--TVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
           R    +  N A+  L G   +++  +               +   + ++L   + Q  E 
Sbjct: 415 RLCRRVYVNPALEWLAGQSADNLTGRTPTEASVATPEVGLQVQGAVEQVLDRGVSQ--EL 472

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKESS 583
                    ++   ++       +            +I+  ++ + +L HA+K+      
Sbjct: 473 ELSWKDSGGEMRHFQVRFVPEFDAEGDVASVLSITREITSLRKTEAQLLHAQKM-----E 527

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
                   V+H+    LT I G+++++   R    G+ R + +A  I  S     ++   
Sbjct: 528 SIGTLAGGVAHDFNNLLTVIGGYADLL---RLSLKGDERRVAFALEISNSVKRGAELTRS 584

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703
           LL  S    GK         L+  V+     +        I +     ++   + A+   
Sbjct: 585 LLAFS----GKHEPQKRYDDLNLIVANLQKSIS-RLLRSDITLTFGLCDDRLSVFAERVQ 639

Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR--------------VRDTGVGMT 749
           ++Q+ +N++ NA     SGG+I ++T      E ++               V D GVGM 
Sbjct: 640 IEQVLINLMVNARDALTSGGRIHVATALVEVREAVVTGGVTVPPGSYGLVTVMDNGVGMD 699

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
              + +  +PF     +    G+GTGLGL +A  +V  + G+  + S P KG +  +  P
Sbjct: 700 KETVGRIFEPFFTTKET----GKGTGLGLSIAFGIVGNHNGRITVESAPGKGAMFRVYLP 755

Query: 810 LYDTSHPHD 818
           + +   P +
Sbjct: 756 ISEGEMPPN 764



 Score = 44.6 bits (104), Expect = 0.074,   Method: Composition-based stats.
 Identities = 27/262 (10%), Positives = 59/262 (22%), Gaps = 10/262 (3%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS---DILHIDPNNHIGDLLKRQNTWY 144
             D       ++  L    G  A  + G    + S     + +     +  +L R  +  
Sbjct: 412 RYDRLCRRVYVNPALEWLAGQSADNLTGRTPTEASVATPEVGLQVQGAVEQVLDRGVS-Q 470

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
                W   G  +     +  +P +    +        I           A       K 
Sbjct: 471 ELELSWKDSGGEMRH-FQVRFVPEFDAEGDV--ASVLSITREITSLRKTEAQLLHAQ-KM 526

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
             +  +  G +        +         LR+  K       +A +          L  S
Sbjct: 527 ESIGTLAGGVAHDFNNLLTVIGGY--ADLLRLSLKGDERRVAFALEISNSVKRGAELTRS 584

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
             +   + E     +           ++    +             LS + +  +     
Sbjct: 585 LLAFSGKHEPQKRYDDLNLIVANLQKSISRLLRSDITLTFGLCDDRLSVFAERVQIEQVL 644

Query: 325 TVDKCPIPFFVYSHGNLFYANP 346
                     + S G +  A  
Sbjct: 645 INLMVNARDALTSGGRIHVATA 666


>gi|307129885|ref|YP_003881901.1| sensory histidine kinase in two-component regulatory system with
           PhoB [Dickeya dadantii 3937]
 gi|306527414|gb|ADM97344.1| sensory histidine kinase in two-component regulatory system with
           PhoB [Dickeya dadantii 3937]
          Length = 440

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 64/357 (17%), Positives = 131/357 (36%), Gaps = 33/357 (9%)

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
           +  S  E+  D + I   EG I+  NR    L  +   +   +     L     +     
Sbjct: 99  RFRSGAESLPDAVVITTEEGGIIWCNRLAQHLLSFRWPEDNGQNILNLLRYPEFTQYMQL 158

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572
                     Q   +    + K    +  R++           +   D+++  Q +    
Sbjct: 159 ----------QDFSRPLTLTLKNAHHVEFRVMPY---SEGQLLMVARDVTQMHQLEG--- 202

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
                       + +F A VSHE+RTPLT + G+ E++ ++    L      +  + +  
Sbjct: 203 -----------ARRNFFANVSHELRTPLTVLQGYLEMMNDE---SLDGALQSKALHTMQE 248

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
               +  +V  LL +S+IE+       E V +   +   +       ++ R  I      
Sbjct: 249 QTRRMDGLVRQLLTLSRIEAAAAIDLNEKVDI-PLMLRVLKREADTLSQGRHEIVFRVNE 307

Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752
            + ++  +   ++    N++ NA++ TP G +I +    T       +V D G G+    
Sbjct: 308 QL-QVFGNEEQLRSAVSNLVYNAVNHTPQGTRIEVCWQQTPQG-AQFQVSDNGPGIAAEH 365

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           L +  + F ++  ++  +  G+GLGL + K  +  +  +  I S    G+      P
Sbjct: 366 LPRLTERFYRVDKARSRQTGGSGLGLAIVKHALSHHDSRLEILSEEGAGSRFMFTLP 422


>gi|163852920|ref|YP_001640963.1| PAS sensor protein [Methylobacterium extorquens PA1]
 gi|163664525|gb|ABY31892.1| PAS sensor protein [Methylobacterium extorquens PA1]
          Length = 512

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 71/447 (15%), Positives = 157/447 (35%), Gaps = 23/447 (5%)

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
                      +     D        R   +         +        +         G
Sbjct: 72  HPDDRQARAHAIESVLRDGGSYEIEYR---VVLPNGRGGWLRSRGQVHLDAEGRPHRHRG 128

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
           +     + +  + ++      L SIL+   + + +I+  G+I S N A  +LFGY   + 
Sbjct: 129 VVFSIEEQKQVEAELRAREAHLRSILDTMPEAMVVIDEAGLIHSFNPAAERLFGYAAGEA 188

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTKEEKLLSLRIIIKKLPF 550
           + +   + + +         L        R  +   +   G   +     + + I ++  
Sbjct: 189 IGQDVRILMPEAMQDGHAADLERYRQTRQRHIIGTTRCVTGRRHDGSTFPMELAIGEMHS 248

Query: 551 SSC--YSLTMHDISEWKQEKNKLSHAKKIAEKESS--HKSDFLARVSHEIRTPLTAIIGF 606
                ++  ++D+S  ++ + +L   +      S      +    ++HE+  PL AI  +
Sbjct: 249 GERTFFTGFINDLSAQRRTEARLQELQSELGHVSRLSAMGEMATTLAHELNQPLGAITNY 308

Query: 607 SEVIKN--QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           +   +       P    R  E  +           I+  L +   +  G+     EPV  
Sbjct: 309 TNGCRRLLAHPDPETIARAQEVLDKAAEQALRARQIIARLREF--VARGETEKRVEPV-- 364

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724
              + EA +L    A E+ I         +  +L D   V+Q+ +N++ NA        +
Sbjct: 365 ATMIEEAGALTLAAAGEQGITAHVVPDPRVGSVLVDRVQVQQVLVNLMRNACEAMQRSSR 424

Query: 725 --IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
             + ++T   S +   + V DTG G+     ++  +PF    ++      G G+GL +++
Sbjct: 425 RELTVATRRVSPDLAEVAVSDTGPGIAEEVADRLFQPFVTTKDA------GMGVGLSISR 478

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFP 809
            +++A+ G+ ++    A G    +  P
Sbjct: 479 TIIEAHGGRLWVEPNAAGGATFRLTLP 505



 Score = 47.7 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 37/252 (14%), Positives = 73/252 (28%), Gaps = 20/252 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G +   +    +  G  A + IG  +  +        + H  DL + + T      
Sbjct: 164 IDEAGLIHSFNPAAERLFGYAAGEAIGQDVRILMPE--AMQDGHAADLERYRQTRQRHII 221

Query: 149 --LWPIEGT---NLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                + G        P++LA   ++S  R F  F GF  ++         A  + L  +
Sbjct: 222 GTTRCVTGRRHDGSTFPMELAIGEMHSGERTF--FTGF--INDLSAQRRTEARLQELQSE 277

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
             H+  +         E     + +   P   + N  +      AH D         +L 
Sbjct: 278 LGHVSRLSA-----MGEMATTLAHELNQPLGAITNYTNGCRRLLAHPDPETIARAQEVLD 332

Query: 264 SEE----SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
                   +               T+K+         +     L+      ++A+     
Sbjct: 333 KAAEQALRARQIIARLREFVARGETEKRVEPVATMIEEAGALTLAAAGEQGITAHVVPDP 392

Query: 320 NLTPETVDKCPI 331
            +    VD+  +
Sbjct: 393 RVGSVLVDRVQV 404


>gi|194366814|ref|YP_002029424.1| integral membrane sensor hybrid histidine kinase [Stenotrophomonas
            maltophilia R551-3]
 gi|194349618|gb|ACF52741.1| integral membrane sensor hybrid histidine kinase [Stenotrophomonas
            maltophilia R551-3]
          Length = 1181

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 76/268 (28%), Positives = 132/268 (49%), Gaps = 8/268 (2%)

Query: 555  SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
              ++      +Q+     H +++AE+ S  KS FLA + HE+RTP+T ++G SE++    
Sbjct: 784  VWSIRARLRRRQQWQLTVHKQQLAEQASQAKSRFLATLGHEVRTPMTGVLGMSELLLATP 843

Query: 615  FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
              P+       YA  I ++G+ +L +VND LD+++IE+G++ L   P  L   + +  +L
Sbjct: 844  LDPV----QRSYAGSIQQAGSHLLRLVNDALDLARIEAGRLELDLRPFDLAGLLDQVQAL 899

Query: 675  VQLYANEKRILI-RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
            +Q  A ++++   R         +  D   V+QI LN+L NAI FT  G  + ++     
Sbjct: 900  MQPMARQRQLAFQRGDDPPGPISVSGDEMRVRQILLNLLGNAIKFTERG-HVGLAVRLDD 958

Query: 734  NE-EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ-IRGEGTGLGLPLAKAMVDANMGK 791
            N   +   V D+G G+   + E+    F Q    +   R  G+GLGL + + +  A  G+
Sbjct: 959  NGAGLCFEVHDSGPGINAEQQERLFHRFEQAEGPRTASRYGGSGLGLAICQELAVAMGGR 1018

Query: 792  FYIFSTPAKGTLIEIIFPLYDTSHPHDC 819
              + S P KG   ++  PL  T    + 
Sbjct: 1019 IEVDSQPGKGARFQVRLPLPWTRQAANA 1046


>gi|254883730|ref|ZP_05256440.1| two-component system sensor histidine kinase [Bacteroides sp.
           4_3_47FAA]
 gi|254836523|gb|EET16832.1| two-component system sensor histidine kinase [Bacteroides sp.
           4_3_47FAA]
          Length = 1045

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 92/417 (22%), Positives = 165/417 (39%), Gaps = 36/417 (8%)

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE---------ATSD 463
           +        N   E    +    +  +    ++ +     +L   LE            D
Sbjct: 500 VNTFYDVVLNCSTEPDTVDVFCMDSTELHNAQQMLSATNHKLSMALEVANIVPWKWNLKD 559

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ---NTPSVMNHYLTEILSLD 520
              + +    I     A++ + G   ED L      +  +        +     ++    
Sbjct: 560 HTILCDLNRPI-----AIAAMPGSISEDQLSVSDEQYFAKIIKEDRPRVIQAYRDLADGK 614

Query: 521 LRQTLEKITLGSTKEEKLLSLRII----IKKLPFSSCYSLTMHD----ISEWKQEKNKLS 572
           + +  E        +     +  I      +    +   LT+      I+E K+ +++L 
Sbjct: 615 IEKVKE-EYRVLANDGTQWKIDWIEAQAAVESKDENGMPLTLVGSSLVITERKKMEDELL 673

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
            AK  AE+ +  KS FLA +SHEIRTPL AIIGFS ++              EY N I+ 
Sbjct: 674 SAKDRAEESNRLKSAFLANMSHEIRTPLNAIIGFSNILAAAEEEQE----KQEYINIIES 729

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
           +  L+L +++D+LD+SKIE+G +   +  V L++ +SE  S+ +       I +      
Sbjct: 730 NNTLLLQLISDILDLSKIEAGTLEFCYSNVELNDIISEIESVTRYRTESNGIQLIVQKGL 789

Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752
               I  +   + Q+  N+L+NA  FT  G  I          E+   V+DTG G+   +
Sbjct: 790 PSCLIRTEKNRLMQVLNNLLNNASKFTSQGS-ITFGYKLCDK-ELYFYVKDTGCGIPADK 847

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +      F ++ +      +GTGLGL + + +V+   G+  + S   KG+      P
Sbjct: 848 VNSIFGRFVKLNSF----VQGTGLGLSICQTIVEHMGGRIGVESEEGKGSTFWFTIP 900


>gi|39996594|ref|NP_952545.1| sensory box histidine kinase [Geobacter sulfurreducens PCA]
 gi|39983475|gb|AAR34868.1| sensory box histidine kinase [Geobacter sulfurreducens PCA]
 gi|307634854|gb|ADI84333.2| sensor histidine kinase [Geobacter sulfurreducens KN400]
          Length = 550

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 96/553 (17%), Positives = 184/553 (33%), Gaps = 45/553 (8%)

Query: 275 FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF 334
                          G  +         +       ++A +D+         D   +   
Sbjct: 28  LRMKGTGPLGVHALEGITKIVVATYGFSIVSLLFLRVTARYDQTVTYFQIIWDILFVTLL 87

Query: 335 VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394
           +   G +     SFL L    S   +        L  A           +M  +     +
Sbjct: 88  ILFTGGVTSP-FSFLYLLAITSASVLLAR--REALYTASLC--AIIYGAIMDLQYFGRLV 142

Query: 395 AASARLHTIQWNRENSLAMTFIP-FEKANQFPENMPQNGIEPEDVDTRINKRKME-IEVM 452
                    Q      +  T                         +T + ++ ++  E+ 
Sbjct: 143 DLGLSPVPAQKLGTTYIFYTIFLNIIAFCSTALLTGYLAERARRSETELEQKAIDYDELE 202

Query: 453 QL-CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
           +L  +I+   + G+  +  +G I   NR    L G  + +         L      V   
Sbjct: 203 RLNSTIVSNLNSGLITVTGDGRIRVFNRYAEALTGIGLAEAYDCHLFDVLPG--FRVYAD 260

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKN 569
            L  +         E   +     +  +    +   L  S      L   D+++ ++ + 
Sbjct: 261 VLANVKRG------EFEFIAKMGRKLTIGFSSVPLMLKDSDAAGILLNFQDVTQVRRMEE 314

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
            L  + ++A        +  AR++HEIR PL AI G +++I     G + +P      + 
Sbjct: 315 SLKKSDRLA-----AIGELSARIAHEIRNPLAAISGSTQLIAQG--GAVSDPD-RRLFDI 366

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           + R  + +  +++D L  ++           PV     V+E  +LV      + ++I   
Sbjct: 367 VLRETDRLNGLISDFLAYARPN----QPEPRPVDFHSLVAELAALVTSDERFEGVVIDNR 422

Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE--------VILRV 741
             +    +L D    +Q+  N++ NA    P GG I +    +              + V
Sbjct: 423 VDSTFRPLL-DPDQFRQVLWNLMGNAAGAMPDGGTITVEAGQSDEIRGGGQRRITYRISV 481

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            DTG+GM    + +  +PF    ++      GTGLGL     +V+A+ G+  + STP KG
Sbjct: 482 ADTGLGMDEATVARIFEPFFTTKST------GTGLGLATVHRIVEAHGGRIAVESTPGKG 535

Query: 802 TLIEIIFPLYDTS 814
           T+  I  P   +S
Sbjct: 536 TMFVIFLPTPPSS 548



 Score = 40.0 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 31/328 (9%), Positives = 76/328 (23%), Gaps = 26/328 (7%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150
             G ++  +       G    +     L DV             D+L       G+    
Sbjct: 221 GDGRIRVFNRYAEALTGIGLAEAYDCHLFDVLPGF-----RVYADVLANVK--RGEFEFI 273

Query: 151 PIEGTNLYVPIDLAALPI----YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
              G    + I  +++P+             F+    V               + +  + 
Sbjct: 274 AKMGR--KLTIGFSSVPLMLKDSDAAGILLNFQDVTQVRRMEESLKKSDRLAAIGELSAR 331

Query: 207 LHEIKKGHSSVEKEKYDIF--SQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
           +    +   +       +         P  R+ + V   T+     + ++         +
Sbjct: 332 IAHEIRNPLAAISGSTQLIAQGGAVSDPDRRLFDIVLRETD---RLNGLISDFLAYARPN 388

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
           +    P   DFH++              +    ++    + R       +     NL   
Sbjct: 389 QPEPRPV--DFHSLVAELAALVTSDERFEGVVIDNRVDSTFRPLLDPDQFRQVLWNLMGN 446

Query: 325 TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
                P        G +         +                T L   + +     +P 
Sbjct: 447 AAGAMP------DGGTITVEAGQSDEIRGGGQRRITYRISVADTGLGMDEATVARIFEPF 500

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLA 412
              +S  T +  +     ++ +      
Sbjct: 501 FTTKSTGTGLGLATVHRIVEAHGGRIAV 528


>gi|317150360|ref|XP_001823967.2| histidine kinase J7 [Aspergillus oryzae RIB40]
          Length = 1304

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 76/255 (29%), Positives = 128/255 (50%), Gaps = 12/255 (4%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           +S  +    + + A++ AE  +  KS+FLA +SHEIRTP+  IIG +++  +        
Sbjct: 701 VSNLRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDD---LK 757

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
           P   E  N +    N +L I++D+LDISKIE+ +M +   P ++   V  A+  + + AN
Sbjct: 758 PYTREMLNVVHNLANSLLTIIDDILDISKIEANRMVIESIPFTVRGTVFNALKTLAVKAN 817

Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV-- 737
           EK + +     N +P  +  D   ++QI LN++ NAI FT  G ++ ++   +  E+   
Sbjct: 818 EKFLSLTYQVDNTVPDYVTGDPFRLRQIILNLVGNAIKFTEHG-EVKLTIRKSDREQCAA 876

Query: 738 -----ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
                   V DTG+G+   +L+     F Q   S   R  GTGLGL ++K +V+   G  
Sbjct: 877 NEYAFEFSVSDTGIGIEEDKLDLIFDTFQQADGSTTRRFGGTGLGLSISKRLVNLMGGDV 936

Query: 793 YIFSTPAKGTLIEII 807
           ++ S    G+     
Sbjct: 937 WVTSEYGHGSTFHFT 951


>gi|74316235|ref|YP_313975.1| PAS/PAC sensor signal transduction histidine kinase [Thiobacillus
           denitrificans ATCC 25259]
 gi|74055730|gb|AAZ96170.1| PAS/PAC Sensor Signal Transduction Histidine Kinase [Thiobacillus
           denitrificans ATCC 25259]
          Length = 449

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 85/424 (20%), Positives = 161/424 (37%), Gaps = 38/424 (8%)

Query: 403 IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV-----MQLCSI 457
           ++   +      ++        P+     G     +     +++           Q    
Sbjct: 44  LRRLWQEYRLSRWLENPDEVDPPDATGTWGDIFYRLQKLQRRQRASRSELTNALEQFEHA 103

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
            +A  D + I+N    I   N A     G   E    +     + Q              
Sbjct: 104 AQAVPDAMVILNGTEQIEWCNPASRSYLGLDCERDQGQFVRYLMRQAHFLDFLDAADYSR 163

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI 577
            L  +  + +            +L + +          L   DI++ ++           
Sbjct: 164 RLVCKSPVNREL----------TLSVQLVPF-GEGKKLLVARDITDLERV---------- 202

Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
                + + DF+A VSHE+RTPLT + GF E +       L       Y + +      +
Sbjct: 203 ----DAMRRDFIANVSHELRTPLTVVGGFVETLAET--DDLPPAESRRYFDLMLDHTRRM 256

Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN-EKRILIRTSFANNIPR 696
             +++DLL +S++ES   +L  EPV++ E V    S  +  +    R+ ++   A +   
Sbjct: 257 QRLLDDLLILSRLESADHSLSDEPVNVPEMVQALKSEAESLSRGRHRVSVQ---ATSGTW 313

Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKA 756
           +    + V+    N++SNA+ +TP GG I +   H  + E +  V+DTG G+    + + 
Sbjct: 314 LKGSQQEVRSAFGNLVSNAVRYTPEGGAITLGW-HERDGEAVFSVKDTGEGIAAEHIPRL 372

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT-SH 815
            + F ++  S+     GTGLGL + K ++  +  +  I STP +G+    IFP     + 
Sbjct: 373 TERFYRVDRSRSRETGGTGLGLAIVKHVLTRHHARLDIQSTPGRGSAFSAIFPAQRVLAA 432

Query: 816 PHDC 819
           P + 
Sbjct: 433 PENA 436


>gi|218130180|ref|ZP_03458984.1| hypothetical protein BACEGG_01768 [Bacteroides eggerthii DSM 20697]
 gi|217987684|gb|EEC54012.1| hypothetical protein BACEGG_01768 [Bacteroides eggerthii DSM 20697]
          Length = 867

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 92/528 (17%), Positives = 186/528 (35%), Gaps = 29/528 (5%)

Query: 293 QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLL 351
           ++N  E  + +  +    +     E  +   +           Y    ++ + N +   +
Sbjct: 352 RSNRHELRKRIQAQTRLMIQQRLVEQRDEFDKMFCSIRDGLITYDTEMHIHFVNRALAEM 411

Query: 352 TKYKSVDDIE---IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
               S   +          ++       +N     +     D+  +    +    +  + 
Sbjct: 412 LGLSSDTYMARSYEGQVAGSIFHIYMNGENILPTLLEQVVRDKKPVVIPEKAFMQENVKG 471

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468
               ++        +               D        E++       +E +S      
Sbjct: 472 TYFPVSGEVVPIFAKDKLTGMAIVCRNISED--------EMQRRFFGMAIEESSIYPWQY 523

Query: 469 NREGIILSTNRAVSKLFGYPVE--DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
           N           + K F Y      I R+     +       +  +   I+      +  
Sbjct: 524 NTRLKCFHFPVGLLKRFNYSDHTGYISREELDRVIHPEDLLRIRKHFDSIILGREPNS-R 582

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSC-----YSLTMHDISEWKQEKNKLSHAKKIAEKE 581
                                    +             I  +K  +++L  A+  A + 
Sbjct: 583 MSFRLQNTAGGYEWWEFRSTAYEGLTADIPYMVLGVCQSIQRYKNTEDELIAARDKALQA 642

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
              KS FLA +SHEIRTPL AI+GFS+++K+       +    ++   I+ +  L+L ++
Sbjct: 643 DKLKSAFLANMSHEIRTPLNAIVGFSDLLKD--LEGFSSEEVQQFVETININCTLLLALM 700

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILAD 700
           ND+LD+S+IESG M+  F   +L   + +     +L   +  + +RT F     + ++ D
Sbjct: 701 NDILDLSRIESGTMDFRFSSYNLTFIMQQVYDSQRLSMPQ-GVELRTDFPEGTGKSMITD 759

Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760
              +KQ+  N+++NA  FT  G  I++      +   ++ V DTG G+++  L    + F
Sbjct: 760 SVRLKQVVNNLINNAKKFTTKG-YILLGYRVEDSGHTVIFVEDTGSGISDENLGHIFERF 818

Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            +  N      +G GLGL + + +V+   G   + S   KGT  E+  
Sbjct: 819 YKADNFT----QGAGLGLSICQTIVERLNGTITVTSKLGKGTHFEVRI 862



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 18/209 (8%), Positives = 61/209 (29%), Gaps = 19/209 (9%)

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK--- 444
             D   +     +  I       +                +            +  +   
Sbjct: 307 HVDVESVEEQGSILNIPLMDRYKVWFILFYSVTVGALVVLVVWLYRSNRHELRKRIQAQT 366

Query: 445 -----RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT- 498
                +++  +  +   +  +  DG+   + E  I   NRA++++ G   +  + + +  
Sbjct: 367 RLMIQQRLVEQRDEFDKMFCSIRDGLITYDTEMHIHFVNRALAEMLGLSSDTYMARSYEG 426

Query: 499 ------VFLEQNTPSVMNHYLTEILSLDLRQTL-EKITLGSTKEEKLLSLRIIIKKLPFS 551
                   +  N  +++   L +++       + EK  +    +     +   +  +   
Sbjct: 427 QVAGSIFHIYMNGENILPTLLEQVVRDKKPVVIPEKAFMQENVKGTYFPVSGEVVPIFAK 486

Query: 552 S---CYSLTMHDISEWKQEKNKLSHAKKI 577
                 ++   +ISE + ++     A + 
Sbjct: 487 DKLTGMAIVCRNISEDEMQRRFFGMAIEE 515


>gi|170761746|ref|YP_001785690.1| sensor histidine kinase [Clostridium botulinum A3 str. Loch Maree]
 gi|169408735|gb|ACA57146.1| sensor histidine kinase [Clostridium botulinum A3 str. Loch Maree]
          Length = 464

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 70/240 (29%), Positives = 123/240 (51%), Gaps = 8/240 (3%)

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           L++      K+   K++F++ VSHE+RTPLT+I G++  +       +      +    I
Sbjct: 230 LNYMADEIVKKDQLKNEFISSVSHELRTPLTSIKGWAITL---NSNEVDKEILKDGLKII 286

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
           +     +  +V +LLD SK  SGKM L+ E +++ E +      ++ YA   RI  + + 
Sbjct: 287 EDESERLSGMVEELLDFSKFVSGKMRLNKEEINICEIIDTVRKQLEPYAYRNRINFKATC 346

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
            N +P I  D   +KQ+ +N+L NA  FTP GG + +ST +     + + V+DTGVG++ 
Sbjct: 347 INKLPNIYGDRNRIKQVLINLLDNAFKFTPEGGLVELSTKYEEE-YITIVVKDTGVGISK 405

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            +L +  + F +  + +       G+GL +   ++  + G  +I S   KGT I I  P+
Sbjct: 406 EDLPRVKEKFYKGNSGKSKN----GIGLSICDEIIKLHNGVLHIESEENKGTTISIKLPI 461


>gi|93609097|gb|ABF13477.1| DRK1 histidine kinase [Ajellomyces dermatitidis]
          Length = 1274

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 76/255 (29%), Positives = 130/255 (50%), Gaps = 12/255 (4%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           +S  +    + + A++ AE  +  KS+FLA +SHEIRTP+  IIG +++  +        
Sbjct: 683 VSNLRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDD---LK 739

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
           P   E  N +    N +L I++D+LDISKIE+ +M +   P S+   V  A+  + + AN
Sbjct: 740 PYPREMLNVVHSLANSLLTIIDDILDISKIEANRMVIEKIPFSMRGTVFNALKTLAVKAN 799

Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV-- 737
           EK + +     +++P  +  D   ++QI LN++ NAI FT  G ++ ++ + +  EE   
Sbjct: 800 EKFLSLAYQVDSSVPDYVTGDPFRLRQIILNLVGNAIKFTEHG-EVKLAISRSDREECKD 858

Query: 738 -----ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
                   V DTG+G+   +L+     F Q   S   +  GTGLGL ++K +V+   G  
Sbjct: 859 NEYAFEFSVSDTGIGIEEDKLDLIFDTFQQADGSTTRKFGGTGLGLSISKRLVNLMGGDV 918

Query: 793 YIFSTPAKGTLIEII 807
           ++ S    G+     
Sbjct: 919 WVTSEYGLGSSFHFT 933


>gi|302388871|ref|YP_003824692.1| integral membrane sensor signal transduction histidine kinase
           [Thermosediminibacter oceani DSM 16646]
 gi|302199499|gb|ADL07069.1| integral membrane sensor signal transduction histidine kinase
           [Thermosediminibacter oceani DSM 16646]
          Length = 483

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 74/265 (27%), Positives = 132/265 (49%), Gaps = 25/265 (9%)

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP-------- 617
           +  + L+   +   ++   K++F+A VSHE+RTPLTAI G++  + +   G         
Sbjct: 224 RLADTLNFMAQEIMRQEELKNEFIASVSHELRTPLTAIKGWTITLLSAIRGTSQAGRSDI 283

Query: 618 ------------LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
                       L     IE    I +    + ++V +LLD S+ E+G + L+ + V+L 
Sbjct: 284 RENAGVPDRRVYLNLDELIEGLEIITKESERLSELVEELLDFSRFEAGAIKLNLDKVALV 343

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725
           + ++   + +   A  + +         +P ILAD   +KQ+ +N+L NA  FTP+GG++
Sbjct: 344 DTLNYIKTQMMPRAKRQAVEFEIYPEEGLPEILADENRIKQVLINLLDNAFKFTPAGGRV 403

Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
            +    ++N+ V + V DTG G+   +L    K F +  +    +  G+GLGL +   +V
Sbjct: 404 RVKAE-SANDSVRIIVEDTGCGIPPEDLPHVTKKFYKAKS----KQPGSGLGLAICDEIV 458

Query: 786 DANMGKFYIFSTPAKGTLIEIIFPL 810
             + G+  I S P KGT +E+I P+
Sbjct: 459 RLHGGRMEITSAPGKGTRVEVILPV 483


>gi|322417907|ref|YP_004197130.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
 gi|320124294|gb|ADW11854.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
          Length = 870

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 69/253 (27%), Positives = 120/253 (47%), Gaps = 15/253 (5%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E    +  L  AK+ AE+ S  KS F+A +SHE+RTP+T ++G  ++             
Sbjct: 473 ERNLMEESLRQAKQAAEEASRTKSRFVANMSHELRTPMTGVLGMLDLALQSC----DETE 528

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             +Y     RS   +L I+ND+LD++K+E+GK +L  +P SL   + +A+ +V      K
Sbjct: 529 RTDYIETAQRSARSLLRILNDVLDLAKVEAGKFSLDSKPFSLRTCIGQAVDVVMPEVRRK 588

Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE------ 735
            + +     +++P  +L D   ++Q+  N++ NA+ FT  G    +     +        
Sbjct: 589 GLELALQIEDHLPDHVLGDQVRLRQVLTNLIGNAVKFTERGS---VRIALRAGGRSPQGP 645

Query: 736 -EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
            E    VRDTG+G+   +       F Q+ +S      GTGLGL ++K +V+   G   +
Sbjct: 646 MEFRFSVRDTGIGIPQDKRHLLFVSFSQLDDSNTRSYGGTGLGLAISKEIVERMGGSIAL 705

Query: 795 FSTPAKGTLIEII 807
                +G+     
Sbjct: 706 EGEKGEGSCFSFT 718


>gi|253563936|ref|ZP_04841393.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|251947712|gb|EES87994.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
          Length = 389

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 79/338 (23%), Positives = 142/338 (42%), Gaps = 16/338 (4%)

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL-EKITLGSTKEE- 536
            A  ++F      +        + +     +      IL   +++ + E       +E  
Sbjct: 54  PAGWEIFHNDSFPVSIARVYQGIYKEDRLRVIEACQGILKGKMKKVVVELRFWAKKREGF 113

Query: 537 --KLLSLRIIIKKLPFSSCYSLT---MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
             + L +  I  K+  +         +  I+  K  + +L+ AK+ AE+ +  KS  +A 
Sbjct: 114 VLEWLEMHAIPGKVDENGRLLTVEGSLMSITRRKVMEEELTAAKEKAEEANRLKSALIAN 173

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           ++HEIRTPL AI+GF+ ++              EY   I  +   +L ++ND++D+S IE
Sbjct: 174 MNHEIRTPLNAIVGFASLLS----IIDDEKEQQEYIGLIQSNTEHLLRLMNDVIDLSNIE 229

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
           SG M++    V LD  + E        A    +++      +   I  D   + QI  ++
Sbjct: 230 SGVMDIVGSDVVLDSLMKEMELTYVPKAETDNLVLAWDREQSNAHIYTDRDRLIQILEHL 289

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           L NAI FT  G  +        N ++   V DTG G+ N + E   + F ++ +      
Sbjct: 290 LDNAIKFTTKG-TVHWGYQEKENGQIRFYVTDTGCGIPNDKKEVIFERFVKLDSFT---- 344

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +G GLGL L K +++   G   + S   +G+      P
Sbjct: 345 QGLGLGLSLCKIIIERMHGTIGVESEVGEGSTFWFTIP 382


>gi|150007327|ref|YP_001302070.1| putative two-component regulator sensor kinase [Parabacteroides
           distasonis ATCC 8503]
 gi|149935751|gb|ABR42448.1| putative two-component regulator sensor kinase [Parabacteroides
           distasonis ATCC 8503]
          Length = 771

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 89/387 (22%), Positives = 167/387 (43%), Gaps = 23/387 (5%)

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDI 492
             E +  +  + K++ E   L   L++ +  I      +G+    NR      G P   +
Sbjct: 386 IQEALHKKDAQEKLKREKTFLSFALDSGN--IFAFRYSKGVFEFDNR-FYHYLGMPCVPM 442

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
             + F   +              +L              +  ++          +     
Sbjct: 443 KIEEFQDAIHPEELDNFLRD-RNLLDSGFLSRKVTQRRCNFNKKGYEWWEFRYAQNKNEK 501

Query: 553 CYS---------LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
                           +I   K  +N L  A++ AE+    K  FLA +SHEIRTPL AI
Sbjct: 502 DLVSGDEAVEVSGLCLNIQRIKDTENSLIAARRKAEESDRMKLVFLANMSHEIRTPLNAI 561

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +GFS+++ +    PL      E+ + I ++ +L+L ++ND+LD+S+IESG M+  +E + 
Sbjct: 562 VGFSQLLNSDM--PLEPEEKAEFIDLITKNSDLLLKLINDILDLSRIESGSMSFSYENLD 619

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
           L + + +     QL   E  + ++    +    I +D   + Q+  N ++NA+ FT  G 
Sbjct: 620 LSKLMGDIFHTHQLMMPE-GVELKIRVPHEPLIIRSDHFRLTQVCTNFINNAVKFTAKG- 677

Query: 724 QIIISTTHTSNEE-VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
            I I    +++ + +++ V+DTG G+ + + EK  + F ++        +GTGLGL + +
Sbjct: 678 YIEIGYELSADGKSILISVKDTGKGIPDDKKEKVFERFQKLD----EFAQGTGLGLAICQ 733

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFP 809
           ++V    G   + S    G++  I  P
Sbjct: 734 SIVHTFHGSISLESEVGVGSMFTISLP 760


>gi|315181473|gb|ADT88386.1| Sensory box sensor histidine kinase/response regulator VieS [Vibrio
           furnissii NCTC 11218]
          Length = 1203

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 90/380 (23%), Positives = 156/380 (41%), Gaps = 16/380 (4%)

Query: 442 INKRKMEIEVMQLCS---ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
           I +R       QL     ++    + I I +    +L TN   +   G            
Sbjct: 494 IQERDALHSKEQLALLQHVINGLPNRIFIHDANYKLLLTNCQGA---GPGACSPCSMRAD 550

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP--FSSCYSL 556
                     +  +   +L        +            ++ R    +           
Sbjct: 551 AANAACLVENVAEF-NTVLQGQTVTRHDVDVTDCPSGMNTVNYRRTQLRGGENDEKFILT 609

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            ++DIS  K+++  L  AK +A+K    +  FLA +SHE+RTP+  ++G  E++K     
Sbjct: 610 VVNDISAQKEQERHLRQAKNVAQKAVLSRERFLASMSHELRTPIAGMVGLLEMLK----I 665

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
              N       N +  S + +  +VND+LD SK+E+ ++ L      L   + E + +  
Sbjct: 666 RETNEDTRLILNNVMSSAHHLHLLVNDILDFSKLEAQQLELDSVKCYLLHEIGELLRVHC 725

Query: 677 LYANEKRILIRTSFANN-IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
             A EK +    ++    +  ++ D   ++QI  N+LSNAI FT SG  + +    T  +
Sbjct: 726 TAAREKSLDFHVNWTPGRVKTVIVDSLRLRQIINNLLSNAIKFTQSGF-VSVDIEVTERD 784

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            V+  + D+G GM+   L+    PF Q  ++   R  GTGLGL +   +V    G   I 
Sbjct: 785 MVM-NISDSGEGMSPEFLKTVFDPFVQADSTIARRYGGTGLGLAIVHDLVKVMKGDITID 843

Query: 796 STPAKGTLIEIIFPLYDTSH 815
           S   KGT I++  P+   S+
Sbjct: 844 SEQGKGTSIQVTIPIQVESY 863


>gi|223938177|ref|ZP_03630074.1| multi-sensor signal transduction histidine kinase [bacterium
           Ellin514]
 gi|223893221|gb|EEF59685.1| multi-sensor signal transduction histidine kinase [bacterium
           Ellin514]
          Length = 1139

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 68/252 (26%), Positives = 114/252 (45%), Gaps = 3/252 (1%)

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           +         +   +    K+ F + VSHE RTPLT ++G  E + NQ  G L      E
Sbjct: 329 RVYEAERQRAEALAEIDRAKTTFFSNVSHEFRTPLTLLLGPVEDLLNQAAGKLDADEQEE 388

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
               I R+G  +L +VN LLD S+IE+G++   ++ + L    +E  S+ +    +  + 
Sbjct: 389 -LKTIHRNGLRLLKLVNSLLDFSRIEAGRIQAAYQEIDLAGYTAELASVFRSAIEKAGLK 447

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
                      I  D    ++I LN++SNA  FT  G +I +       +   L VRDTG
Sbjct: 448 FTVDCPPLAEPIFVDRDMWEKIVLNLISNAFKFTLQG-EIEVRLRQV-GKNAELTVRDTG 505

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
            G+   ++ +  + F ++  +Q    EGTG+GL L   +V  + G+  + S   +G+   
Sbjct: 506 AGIPAEQVNRVFERFHRVEGTQGRTHEGTGIGLALVHELVKLHGGRVSVSSELGQGSTFT 565

Query: 806 IIFPLYDTSHPH 817
           +  P      P 
Sbjct: 566 VSLPFGQDHLPQ 577



 Score =  267 bits (682), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 103/751 (13%), Positives = 222/751 (29%), Gaps = 64/751 (8%)

Query: 92   HGYLKEISEELPKTIGNYAF--KMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
             G ++   +E     G  A    +    +        +D       +   ++ W      
Sbjct: 414  AGRIQAAYQE-IDLAGYTAELASVFRSAIEKAGLKFTVDCPPLAEPIFVDRDMWEKIVLN 472

Query: 150  WPIEGTNLYVPIDLAALPIYSRNREFS------GFRGFGIVHVNRVDNDPRALGKRLDKK 203
                         ++    ++   E        G      V           + +  ++ 
Sbjct: 473  L------------ISNAFKFTLQGEIEVRLRQVGKNAELTVRDTGAGIPAEQVNRVFERF 520

Query: 204  FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL--TEYYAHKDDVLKTEKYPL 261
                    + H         +             +       T   +         +  +
Sbjct: 521  HRVEGTQGRTHEGTGIGLALVHELVKLHGGRVSVSSELGQGSTFTVSLPFGQDHLPQTQV 580

Query: 262  LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN-----SKESFEYLSHRNHPSLSAYFD 316
             +  + +         +                +                + P+      
Sbjct: 581  SSGRQVAFTNLGPSPYVTEAARWLPDGEEGRLTDKNINTLSNLATTTETGSDPAEVPASP 640

Query: 317  EGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
                      D   +  +V       Y   +     +      ++    L  +L    + 
Sbjct: 641  AARARILLADDNADMRDYVMRLLKGSYRVEAVAD-GEAALKAALKHPPDL--ILSDIMMP 697

Query: 377  DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
              +    +   R++ +       L + +   E+ +       +     P +  +      
Sbjct: 698  RLDGFGLLREVRNNPSTRLIPVILLSARAGEESRVEGLGHGADDYLTKPFSAHELLARVR 757

Query: 437  ---DVDTRINKRK--MEIEVMQLCSILEATSDGIAII----NREGIILSTNRAVSKLFGY 487
                +     +    ++    +L  I   TSD I  I    ++    LS N +     G 
Sbjct: 758  SHLRMARLRQEAADVIQAREHELSLIYNNTSDVIFYIGVEPDQRFRFLSVNPSFLATTGL 817

Query: 488  PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
                +  K     + + + S++  +  + +        E  T      +K+  + I    
Sbjct: 818  SENQVTGKLVNEVIPEPSCSMVLGHYKQAIQERKTIRWE-ETSNYPSGKKVGMVSITPIF 876

Query: 548  LPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESS----HKSDFLARVSHEIRTPLT 601
             P         T+HDI+E KQ + KL         +          F   +SH++R PL 
Sbjct: 877  NPDGVCINLIGTVHDITERKQIEEKLERLVVERTAKLRDTIGELEAFSYSISHDLRAPLR 936

Query: 602  AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
            ++ GF+EV+K      +G    + Y N I  S   +  ++ D+L  SK+   +  L  EP
Sbjct: 937  SMQGFAEVLKEDCRDQIGPEGQL-YLNKISDSARRMDRLIQDVLTFSKM--ARTELILEP 993

Query: 662  VSLDEAVSEAISL---VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718
            ++ ++ +   +      Q   ++       +    +P +L +  ++ Q   N++ NAI F
Sbjct: 994  INTEKLLQTILDSYPSFQPPFSQ------IAIKARLPLVLGNEAALTQCISNLIGNAIKF 1047

Query: 719  TPSGGQIIIST-THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
               G    IS      +  V L  +D G+G+     E+    F +I        EGTG+G
Sbjct: 1048 VQPGTVPQISVWAEEQDGYVRLFFKDNGIGIPKISQERIFGIFQRISTG----YEGTGIG 1103

Query: 778  LPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            L + K  V+   GK  ++S   +G+   +  
Sbjct: 1104 LAIVKKAVERMGGKVGLYSEEGRGSTFWLEL 1134



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 47/388 (12%), Positives = 100/388 (25%), Gaps = 36/388 (9%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN-TW-YGKTTLWPI 152
               ++    T+G     ++G     V   +  D       ++K  N TW  G       
Sbjct: 64  YFFCNDAYLPTVGIKHTWVLGTPASKVWAEIWPDIGPRAESVVKTGNATWDEGLLLFLQR 123

Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212
            G         +  P+   +    G     +V             + +D++   +     
Sbjct: 124 SGFTEETYHTFSYSPLPDDSGAIGGL--LCVVT--------EETERTIDQRRLAMLREMA 173

Query: 213 GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ 272
              +  K + ++F         R  +    L   Y  +           +T +    P +
Sbjct: 174 ADLATVKTEGELFRTVEHRLKARALDIPFGLVYLYDAEGRRACLACSNGVTPQSPIAPAE 233

Query: 273 EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET---VDKC 329
               + +       Q      +           +N P+        + +         + 
Sbjct: 234 ISLSSADS--IWPAQKVFETNHPVLVENLTERFQNLPTGPWNKPARQAVLVPITQPARQT 291

Query: 330 PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389
           P  F V         NP     + Y    D+  AG ++  L   ++ +    +   L   
Sbjct: 292 PAGFLVAG------INPYRPFGSAYSGFLDLL-AGQIAAALSNARVYEAERQRAEALAEI 344

Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449
           DR           +       L +   P E                 D D +   + +  
Sbjct: 345 DRAKTTF---FSNVSHEFRTPLTLLLGPVEDLLNQAAGKL-------DADEQEELKTIHR 394

Query: 450 EVMQLCSILEATSDGIAIINREGIILST 477
             ++L  ++ +  D        G I + 
Sbjct: 395 NGLRLLKLVNSLLD--FSRIEAGRIQAA 420



 Score = 42.3 bits (98), Expect = 0.31,   Method: Composition-based stats.
 Identities = 16/112 (14%), Positives = 34/112 (30%), Gaps = 6/112 (5%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD-ILHIDPNNHIGDLLKRQNTWYGKTT 148
           D       ++     T G    ++ G  + +V           H    ++ + T   + T
Sbjct: 799 DQRFRFLSVNPSFLATTGLSENQVTGKLVNEVIPEPSCSMVLGHYKQAIQERKTIRWEET 858

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
                G  + +   ++  PI++ +         G VH            +RL
Sbjct: 859 SNYPSGKKVGM---VSITPIFNPDG--VCINLIGTVHDITERKQIEEKLERL 905


>gi|197118249|ref|YP_002138676.1| PAS domain-containing sensor histidine kinase [Geobacter
           bemidjiensis Bem]
 gi|197087609|gb|ACH38880.1| sensor histidine kinase, PAS domain-containing protein [Geobacter
           bemidjiensis Bem]
          Length = 649

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 87/564 (15%), Positives = 184/564 (32%), Gaps = 43/564 (7%)

Query: 280 LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH- 338
             +   +Q      + S+ +    S R    L    +   +                   
Sbjct: 2   QARRPARQVGNETADASRNAPPGGSARCLADLCKRLNGTPDPLEALGVLLQAAMEAVDAA 61

Query: 339 ---GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIA 395
              G +   +          S   +  +   +       L             +     +
Sbjct: 62  EARGGIVSDDDVVTERLSCGSPGQLRRSSAATHATYQRLLRQPEVWIGNDGATAVPLVDS 121

Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQ-FPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
               +  I+      L  +    E                    + R + R  +     L
Sbjct: 122 TKGLVAWIELKHTPPLPFSETEVELLEAMAAVTTLALETARMRCEHRHSSRASDEASSLL 181

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH--Y 512
            + +E+T DGI  ++  G I++ NR   +++G   ED+        L      + +   +
Sbjct: 182 SATIESTLDGIMAVDANGDIVAYNRRFIQMWGLEEEDLTGGDCNHLLLSLLGELKDPVLF 241

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNK 570
             ++  L  +   E   +   +  +        +            T HD++E K+ +N+
Sbjct: 242 FEKVSELYWQPESESYDVVELRSGRCFERFSRPRLTEDGRPAGRVWTFHDVTELKKLENQ 301

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           L HA+K+              ++H+    +TA+IG+++++  +   P     Y  +   I
Sbjct: 302 LLHAQKM-----EAIGTLAGGIAHDFNNIMTAVIGYTDLLMLELVPPAP---YRGFLENI 353

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
             + +  + +V +LL  S+ E+    L    +  +  +     L++       +    + 
Sbjct: 354 QNASHRAIALVKNLLAFSREEA----LPTAKLECNALLQNVAGLMKRLI-GHEVDFVLNL 408

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS--------------NEE 736
           ++    IL D   ++Q+ +N+ +NA    P GG + I                       
Sbjct: 409 SSAPQGILVDQGQIEQVLVNLATNARDAMPHGGTLTIEVAAIELSALELAGHHTAKAGPY 468

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           V +   DTG+G+      +   PF          G+G+GLGL ++  +V  + G   + S
Sbjct: 469 VQISFSDTGLGIDESVKSRIFDPFYTTK----EVGKGSGLGLSISYGIVKRHGGLIDVAS 524

Query: 797 TPAKGTLIEIIFP---LYDTSHPH 817
              +GT   ++ P   L     PH
Sbjct: 525 GQGRGTTFSVLLPKVELAPALRPH 548


>gi|90425981|ref|YP_534351.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisB18]
 gi|90107995|gb|ABD90032.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisB18]
          Length = 1022

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 82/253 (32%), Positives = 133/253 (52%), Gaps = 8/253 (3%)

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           + +   L HA + AE  +  KS+FLA +SHEIRTPL  ++G ++V+      P+      
Sbjct: 285 RAQNRILKHAVRRAEAANEAKSEFLANMSHEIRTPLNGVLGMADVLMRTDLTPV----QR 340

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
            YA  I  SG+L++ I+ND+LD++K++SG++ +    V L   + EA S     A EK +
Sbjct: 341 NYAQLIVTSGSLLMTILNDVLDMAKLDSGQLAIKPCKVELQLQLKEAASFYFAQAREKDL 400

Query: 685 LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSN--EEVILR 740
            +    A ++PR +  D   ++QI  N++ NA+ FT  GG  +I+S  H       + + 
Sbjct: 401 ELVLDVAPDVPRHVQLDPMRLRQILGNLIGNALKFTSKGGVAVIVSYQHQDEKSGRLHIS 460

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V DTG+G+T  +  K    F Q  +  Q   EGTGLGL + K + +A  G+  + S    
Sbjct: 461 VVDTGIGLTEEQQGKLFGRFVQAEDDGQRHREGTGLGLAICKKLCNAMGGEIGVTSEKGV 520

Query: 801 GTLIEIIFPLYDT 813
           G+      P+ + 
Sbjct: 521 GSTFSFWIPVIEE 533


>gi|302344057|ref|YP_003808586.1| multi-sensor signal transduction histidine kinase [Desulfarculus
           baarsii DSM 2075]
 gi|301640670|gb|ADK85992.1| multi-sensor signal transduction histidine kinase [Desulfarculus
           baarsii DSM 2075]
          Length = 488

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 83/420 (19%), Positives = 154/420 (36%), Gaps = 21/420 (5%)

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED--VDTRINKRKMEIEVMQLCSI 457
           L  +    +  L             PE     G E     +  +I +  +  +       
Sbjct: 75  LKRLARQEDQILDSCRRMALGEPGPPEVDLAAGGELARIGLAIQIMREALLEQQSHYQRF 134

Query: 458 LEATSDGIAIINREG-IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
            +A  D    I+  G  +L  N A     G   E +L +    F+  +T           
Sbjct: 135 FDAAHDMFISISPAGGRVLDANPAFLARLGLGREQVLGRKVGDFVRLDTDWAQAMAKPGQ 194

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKK 576
           L      T + + L        +SL +              + D++E ++   +L    +
Sbjct: 195 LISGHLHTPKGVLL------TEISLSLETGPGGQPWFLGAIVRDVTERERLAGELLRKTR 248

Query: 577 IAEKESSH-------KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
             E            K +FL  +SHE++TPL ++ GF +++     G         +   
Sbjct: 249 ALEMALEEIRSVEKLKDEFLTTLSHELKTPLVSLKGFLQLLLR---GAASPEESQAHLEV 305

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
             R+   +   +N+LLD++++   K +    PV L + +      ++  A E  + +   
Sbjct: 306 CWRNLLKLEQQINNLLDLARLSQSKEHFRLAPVDLVKLLGTECENLRPTAEESNVSLSVD 365

Query: 690 FAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748
                   +L +   + Q+  N++ NAI +   GGQ+ +S     +  V L VRD+GVG+
Sbjct: 366 ETPLEGAVVLGNAEKLIQLLDNLIVNAIKYNKKGGQVHLSVE-RGDGRVTLAVRDSGVGI 424

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
               +      F +   +   R EG G+GL L + +V  + G   + S   KGT   +  
Sbjct: 425 AREHMASIFNKFYRADITGTGRLEGLGIGLALVQEIVKLHGGDIAVQSELGKGTTFTVTL 484



 Score = 41.2 bits (95), Expect = 0.81,   Method: Composition-based stats.
 Identities = 20/202 (9%), Positives = 53/202 (26%), Gaps = 11/202 (5%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150
           A G + + +      +G    +++G ++ D   +     +      + +           
Sbjct: 148 AGGRVLDANPAFLARLGLGREQVLGRKVGDFVRL-----DTDWAQAMAKPGQLISGHLHT 202

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
           P       +  +++         +   F G  IV              R  +      E 
Sbjct: 203 PKG----VLLTEISLSLETGPGGQPW-FLG-AIVRDVTERERLAGELLRKTRALEMALEE 256

Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270
            +    ++ E     S +   P + +K  +  L    A  ++     +       +    
Sbjct: 257 IRSVEKLKDEFLTTLSHELKTPLVSLKGFLQLLLRGAASPEESQAHLEVCWRNLLKLEQQ 316

Query: 271 EQEDFHTINLNQYTKKQYFGTL 292
                    L+Q  +      +
Sbjct: 317 INNLLDLARLSQSKEHFRLAPV 338


>gi|91783974|ref|YP_559180.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia xenovorans
           LB400]
 gi|91687928|gb|ABE31128.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia xenovorans
           LB400]
          Length = 782

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 82/497 (16%), Positives = 161/497 (32%), Gaps = 40/497 (8%)

Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
           F +   G +   NP    +  Y+  + +     L  L    + S       +   R    
Sbjct: 27  FALSPDGRIQSWNPGGEAIYGYRRDEVLGQP--LDILYTEEERSKGLPAAGLETARRTHR 84

Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
                     ++ +       + +      +  +      I  +  D +     +     
Sbjct: 85  ---YDTEGWRVRKDG-TVFWASVVTTTLRAEDGQITGFAKIVRDMTDKKTAHDAVLESER 140

Query: 453 QLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
           +   ++   +D  I +++ EGII + N    ++ GY  E+++   F+ F      +    
Sbjct: 141 RFRMLVHGVTDYAIYMLSPEGIITNWNPGARRIKGYTAEEVIGSHFSRFYTPEDAAAGLP 200

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQE 567
               +         E       +  +     ++I  +               DI+E  + 
Sbjct: 201 Q-HGLAVAAREGRFEAEGWRVKRNGERFLAHVVIDAIRDDDGMLAGFAKITRDITERSEA 259

Query: 568 KNKLSHAKKIAEKES--SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
              L   +    +             V+H+    L  + G  E +   R G   +    E
Sbjct: 260 ARLLEETRAALFQSQKMEAIGKLTGGVAHDFNNVLQVLRGNLE-LLEHRHGR--DAWTRE 316

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
                  +      + + LL   +    +  L    ++L  A+     L++  A  + + 
Sbjct: 317 RLEKAIDAVERGAKLASQLLSFGR----QQPLQPVVINLAPAIRGMDDLLR-RALGETVE 371

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT--------------H 731
           + T  A  +   L D+  ++ + LN+  NA    P GG++ I  +               
Sbjct: 372 VETVVAGGLWNTLIDIHQLENVLLNLAINARDAMPDGGKLTIELSNAMLDDHYVAGLPDV 431

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
              + V+L V DTG GM    L++A  PF          G GTGLGL  A   V  + G 
Sbjct: 432 PPGQYVLLAVTDTGTGMAADVLQRAFDPFFTTKP----EGRGTGLGLSTAYGFVKQSGGH 487

Query: 792 FYIFSTPAKGTLIEIIF 808
             ++S    GT ++I  
Sbjct: 488 IRLYSEVGHGTTVKIYL 504



 Score = 78.5 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 40/393 (10%), Positives = 101/393 (25%), Gaps = 24/393 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + +   G ++  +       G    +++G  L  +              L   + T   
Sbjct: 26  IFALSPDGRIQSWNPGGEAIYGYRRDEVLGQPLDILYTEEERSKGLPAAGLETARRTHRY 85

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
            T  W +          +    + + + + +GF    IV                +++F 
Sbjct: 86  DTEGWRVRKDGTVFWASVVTTTLRAEDGQITGFAK--IVRDMTDKKTAHDAVLESERRFR 143

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHL---RMKNKVSS--LTEYYAHKDDVLKTEKYP 260
            L      ++        I +  +P           +V     + +Y  +D      ++ 
Sbjct: 144 MLVHGVTDYAIYMLSPEGIITNWNPGARRIKGYTAEEVIGSHFSRFYTPEDAAAGLPQHG 203

Query: 261 LLTSEESSLPEQEDFHT-INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
           L  +      E E +    N  ++        ++++      +       +  +      
Sbjct: 204 LAVAAREGRFEAEGWRVKRNGERFLAHVVIDAIRDDDGMLAGFAKITRDITERSEAARLL 263

Query: 320 NLTPETVDKCP--------IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
             T   + +               +   N+       L L +++   D      L   +D
Sbjct: 264 EETRAALFQSQKMEAIGKLTGGVAHDFNNVLQVLRGNLELLEHRHGRDAWTRERLEKAID 323

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
           A +     A + +   R              I+   +                 E +   
Sbjct: 324 AVERGAKLASQLLSFGRQQPLQPVVINLAPAIRGMDD-----LLRRALGETVEVETVVAG 378

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
           G+    +D    +  +    +      +A  DG
Sbjct: 379 GLWNTLIDIHQLENVLLNLAINAR---DAMPDG 408



 Score = 74.3 bits (181), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 18/137 (13%), Positives = 49/137 (35%), Gaps = 6/137 (4%)

Query: 458 LEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           +E+ SD  I  ++ +G I S N     ++GY  +++L +P  +   +   S        +
Sbjct: 18  VESVSDYAIFALSPDGRIQSWNPGGEAIYGYRRDEVLGQPLDILYTEEERSKGLPA-AGL 76

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLS 572
            +       +       K+  +    ++   L             + D+++ K   + + 
Sbjct: 77  ETARRTHRYDTEGWRVRKDGTVFWASVVTTTLRAEDGQITGFAKIVRDMTDKKTAHDAVL 136

Query: 573 HAKKIAEKESSHKSDFL 589
            +++         +D+ 
Sbjct: 137 ESERRFRMLVHGVTDYA 153


>gi|27367329|ref|NP_762856.1| signal transduction histidine kinase [Vibrio vulnificus CMCP6]
 gi|27358898|gb|AAO07846.1|AE016811_87 Signal transduction histidine kinase [Vibrio vulnificus CMCP6]
          Length = 716

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 83/257 (32%), Positives = 126/257 (49%), Gaps = 9/257 (3%)

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           +Q+   +  AK+ AE  +  KS FLA +SHE+RTPL AIIG    + +       + +  
Sbjct: 215 QQQSLDMQEAKRAAEASAETKSKFLANISHEVRTPLNAIIG----LSDTDHYLNASEQIR 270

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           EY + I RSG  +L ++ND+LDISKI+SGK+ L     SL + V +   L         +
Sbjct: 271 EYIDLIHRSGKHLLALMNDILDISKIDSGKLTLEQVEFSLKDIVDDTRVLFHERTQTPGV 330

Query: 685 LIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EVILR 740
                   +   I   D   + QI  N+ SNAI FT  G QI ++ T  +      + + 
Sbjct: 331 ESFIITPQDCDMIFYGDPLRLFQIISNLCSNAIKFTHEG-QIKVAFTVQNRGPNSVLQIC 389

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V DTG+G++  +L+K    F Q  +S   +  GTGLGL + + + +   G   I S   +
Sbjct: 390 VSDTGIGISEAQLQKVFDEFVQADDSTTRKYGGTGLGLAICQKLTNLMQGTLRIESELNR 449

Query: 801 GTLIEIIFPLYDTSHPH 817
           GT + +   L     PH
Sbjct: 450 GTHVTLSLTLPLLHAPH 466


>gi|237718855|ref|ZP_04549336.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
 gi|229451987|gb|EEO57778.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
          Length = 407

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 83/378 (21%), Positives = 156/378 (41%), Gaps = 31/378 (8%)

Query: 451 VMQLC-----SILEATSDGIAIINREGIILST--NRAVSKLFGYPVEDILRKPFTVFLEQ 503
             +        IL+A  D + + + +  I+    + A + + G    +I        L +
Sbjct: 46  KERFRDKYSTRILDALPDMLTVFDHDANIIELASSPATNHVEGISPNNITTTNVKDILPK 105

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                +   + +++      T     +    +  L      I  L           DIS+
Sbjct: 106 EAYESVRKNMDKVILTGESSTARHELML---DGVLHHYENRIFPL-DKKYLLCMCRDISQ 161

Query: 564 WKQEKN-------KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
             + +        +L  A+  AE+    KS FLA +SHEIRTPL AI+GFS++I      
Sbjct: 162 QWEAEQTNAQQQKELKAARIKAEESDRLKSAFLANMSHEIRTPLNAIVGFSKLI----TY 217

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
                   +Y+  I+R+  ++L++ ND+LD++ +E+  +  +  P+ L +   +      
Sbjct: 218 ATSAEEKNQYSEIIERNSEMLLNLFNDILDLASLEADSLKFNIRPIKLIDICLQLEQQFW 277

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS-NE 735
               +  + +     +       D   + QI  N+LSNA  FTP G    I   +    +
Sbjct: 278 HK-TQNGVKLILDDVDTDMYTSGDWNRIIQIISNLLSNATKFTPKG---EIHFGYREKED 333

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            V   V+D+G+G+    +    + FG++ +      +GTGLGL L + +V+   G+ ++ 
Sbjct: 334 FVEFYVKDSGIGIPAARIATIFRRFGKVDDF----VQGTGLGLTLCRMLVEKMGGRIWLR 389

Query: 796 STPAKGTLIEIIFPLYDT 813
           S   +G+      PL   
Sbjct: 390 SQEGQGSRFYFTLPLVRQ 407


>gi|332558956|ref|ZP_08413278.1| PAS/PAC sensor hybrid histidine kinase [Rhodobacter sphaeroides
           WS8N]
 gi|332276668|gb|EGJ21983.1| PAS/PAC sensor hybrid histidine kinase [Rhodobacter sphaeroides
           WS8N]
          Length = 945

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 116/774 (14%), Positives = 242/774 (31%), Gaps = 76/774 (9%)

Query: 88  NIDAHGYLKEISEELPK---TIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144
            +DA   L            T+G  A    G  L D            +   ++      
Sbjct: 39  ELDADERLLRGHPGWLDRLPTLGPMAP---GQGLQDFLPADLATEVRRVLAEVETTGAPV 95

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            +       G  +++ I  A LP  + +R                         +  +  
Sbjct: 96  SRDWQVRQAGARVWLAISAARLPPLAPDRRPGHAVMICDTTELHAQRKQADRLGKFAQLT 155

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
           ++L  +   H  +E        Q            + ++ +            +  +L  
Sbjct: 156 TNLVIVTDPHQRIEWVNAAFEQQTGHSGPSVRGQPLCAVLQGEPAPGGCGDRLRT-MLAE 214

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
             ++  E E        ++        L ++      Y++  +  +     +E       
Sbjct: 215 GRTARAEVEAT-AACGRRFWLDVSLQPLLDDEGALDGYMAVASDITAHKRQEEQLAAMAA 273

Query: 325 T-----------VDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                       VD  P  F  +     L   NP +       +   +  A       + 
Sbjct: 274 EARATRARLAAAVDVLPDGFAYFDAEDRLVVFNPQYRDCYPGAAAAIVPGAS-----FEQ 328

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
                  +   +     +   +AA    H    N++              +   +  + G
Sbjct: 329 ILRQAVQSGDILEARGREEEWLAARLAAHHRGSNQQEQQLADGRWLRVIERQTPDGGRVG 388

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-PVED 491
           +  +    ++ +++  I      + ++A+ DGIA  + EG  +  N A  ++FG    ++
Sbjct: 389 LRVDVTALKLAEQRTRI---DFSATMDASQDGIAFTDPEGRYIYMNPAHREMFGIATEDE 445

Query: 492 ILRKPFTVFLEQNTPSVMNH-YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
           IL + +      +    +    L  +LS    +      +G  ++   L   + +  L  
Sbjct: 446 ILGRSWRELYSGDVADHIATTALPALLSTGGWRG---ELIGRRRDGSDLPQEVSLT-LKA 501

Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH--KSDFLARVSHEIRTPLTAIIGFSE 608
                    DIS+  +E+ + +  ++  +            + ++H++   L AI G + 
Sbjct: 502 DGGIICISRDISKRLREQQERTRLREELQMAQRREVIGQLASGLAHDLNNLLAAIGGSAL 561

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
           +I+  + G         +A  I  +      +V   L +     GK   +   + L   +
Sbjct: 562 LIRELQPGAAEV-----HAQRILAATEQAGALVRRFLTL-----GKRQSNRSRIDLCPLL 611

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT------PSG 722
            EA  LVQ      R  +  +  +    I AD   + Q+ LN++ NA            G
Sbjct: 612 QEAADLVQAGL-RNRTRLTLALPDAPIWIEADPTDILQVVLNLVINARDAISTAPPREGG 670

Query: 723 GQIIISTT----------------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
            +I ++                        V + V D+G G+      K  +P+     +
Sbjct: 671 HEITVALAPAGPAQLVQTYAVGAPCADRRYVSMTVSDSGPGIEPAMQAKVFQPYFSTKGA 730

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY--DTSHPHD 818
                 GTGLGL +   ++ AN G   + S P +GT   +++P+   D + P D
Sbjct: 731 A-----GTGLGLAIVTGVLTANHGAIALQSAPGEGTRFTVLWPVEPPDAAAPSD 779



 Score = 77.4 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 29/412 (7%), Positives = 81/412 (19%), Gaps = 24/412 (5%)

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY 246
                       R       +  +     + E+            P L        L ++
Sbjct: 13  RDQQRALEEERSRTQAALQVMPHMLIELDADERLLRGHPGWLDRLPTLGPMAPGQGLQDF 72

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
                          + +  + +             +                  +    
Sbjct: 73  LPADLATEVRRVLAEVETTGAPVSRDWQVRQAGARVWLAISAARLPPLAPDRRPGHAVMI 132

Query: 307 NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGG 365
              +      +  +   +          V      + + N +F   T +           
Sbjct: 133 CDTTELHAQRKQADRLGKFAQLTTNLVIVTDPHQRIEWVNAAFEQQTGHSGPSVRGQPLC 192

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
               +   + +       +    ++     A                +        +   
Sbjct: 193 A---VLQGEPAPGGCGDRLRTMLAEGRTARAEVEATAAC---GRRFWLDVSLQPLLDDEG 246

Query: 426 ENMPQNGIEPEDVDTRINKRKM-------EIEVMQLCSILEATSDGIAIINREGIILSTN 478
                  +  +    +  + ++            +L + ++   DG A  + E  ++  N
Sbjct: 247 ALDGYMAVASDITAHKRQEEQLAAMAAEARATRARLAAAVDVLPDGFAYFDAEDRLVVFN 306

Query: 479 RAVSKLF-GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG------ 531
                 + G     +    F   L Q   S             L   L     G      
Sbjct: 307 PQYRDCYPGAAAAIVPGASFEQILRQAVQSGDILEARGREEEWLAARLAAHHRGSNQQEQ 366

Query: 532 STKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
              + + L +   I++            D++  K  + +           S 
Sbjct: 367 QLADGRWLRV---IERQTPDGGRVGLRVDVTALKLAEQRTRIDFSATMDASQ 415


>gi|224438070|ref|ZP_03659009.1| PAS/PAC sensor signal transduction histidine kinase [Helicobacter
           cinaedi CCUG 18818]
 gi|313144514|ref|ZP_07806707.1| phosphate regulon sensor histidine kinase [Helicobacter cinaedi
           CCUG 18818]
 gi|313129545|gb|EFR47162.1| phosphate regulon sensor histidine kinase [Helicobacter cinaedi
           CCUG 18818]
          Length = 568

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 75/367 (20%), Positives = 150/367 (40%), Gaps = 35/367 (9%)

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
               ++ +I++  ++G  +++ E  I S N    +                  E    + 
Sbjct: 228 ARQHEIETIIQNMNEGFLLLDSELYIKSCNPIALEYLQID-------SIDTLFESPHLAT 280

Query: 509 MNHYLTEIL------SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
           +   L  I+      +     + E    G T     L + +  +        ++ + D S
Sbjct: 281 LQAELQNIMNKPQNNTEGSDCSFECEIKGRTLYVIALPVWVKTQL----QAIAMVLIDKS 336

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
             KQ ++               + +F A V+HE++TPL  I+  SE++K+   G +    
Sbjct: 337 SQKQAQDF--------------RKEFSANVTHELKTPLAIILASSEMLKS---GLVKKED 379

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             E+   I    N +L +++ +L +S  +   + L   P+ L E +      ++  A+EK
Sbjct: 380 EAEFLTKIYTESNRLLTLIDKILRLSFFDENTIELEKSPLDLGEILKRVGKNLKSLADEK 439

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
            I I  S      +I      ++ +  N++ NAI ++    QI +  +  +   V + V+
Sbjct: 440 GIEIVISTNGRESKIWGISSLIEDMIYNLVENAIKYSNEKSQITLLLSQNAQG-VSVCVK 498

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D+G+G+   E E+  + F  +  S+  +  G+GLGL + K +   +  K  + S    GT
Sbjct: 499 DSGIGIPLEEQERVFERFYCVDKSRSKKLGGSGLGLSIVKHIAKIHNAKIELKSQLGVGT 558

Query: 803 LIEIIFP 809
            I + FP
Sbjct: 559 SIRVEFP 565


>gi|46576353|sp|O34206|KINB_PSEAE RecName: Full=Alginate biosynthesis sensor protein kinB
 gi|2352098|gb|AAB68790.1| histidine protein kinase [Pseudomonas aeruginosa]
          Length = 595

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 95/581 (16%), Positives = 208/581 (35%), Gaps = 44/581 (7%)

Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE-YLSHRN 307
              +   +  Y  +   +       D   I L +    Q     QN+ +   E   ++  
Sbjct: 40  RAQEQRMSHHYATIEVSQQLRQLLGDQLVILLRETPDGQALERSQNDFRRVLEQGRANTV 99

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPF---FVYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364
             +  A  D   +   +     P       V + G     N   L L   + +  +    
Sbjct: 100 DSAEQAALDGVRDAYLQLQAHTPALLEAPMVDNDGFSEAFNGLRLRLQDLQQL-ALAGIS 158

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYR-----------SDRTCIAASARLHTIQWNRENSLAM 413
              T            +  V +             + R                E    +
Sbjct: 159 DAETSARHRAYLVAGLLGLVGVAILLIGFVTAHSIARRFGAPIETLARAADRIGEGDFDV 218

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVD--TRINKRKMEIEVMQLCSILEATSDGIAIINRE 471
           T  P     +  +   + G+  E +    + +  ++     +L ++L++  DG+ I + +
Sbjct: 219 TL-PMTNVAEVGQLTRRFGLMAEALRQYRKTSVEEVLSGERRLQAVLDSIDDGLVIFDNQ 277

Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
           G I   N    +      +   ++   +  + +    +   L   +  +    L    + 
Sbjct: 278 GRIEHANPVAIRQLFVSNDPHGKRIDEILSDVDVQEAVEKALLGEVQDEAMPDL---VVD 334

Query: 532 STKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
              E +LL+  +     P        L + D++E +  +                +S+F+
Sbjct: 335 VAGESRLLAWSLYPVTHPGGHSVGAVLVVRDVTEQRAFE--------------RVRSEFV 380

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
            R SHE+RTP+T +   +  +  +R       R  +    +D   + ++ ++NDLL+ S+
Sbjct: 381 LRASHELRTPVTGMQ-MAFSLLRERLDFPAESREADLIQTVDEEMSRLVLLINDLLNFSR 439

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709
            ++G   L      L + +++A          +R+ ++    + +PR+  D   ++++  
Sbjct: 440 YQTGMQKLELASCDLVDLLTQAQQRFIPKGEARRVSLQLELGDELPRLQLDRLQIERVID 499

Query: 710 NILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
           N+L NA+  +  GGQI +       + V++ V D G G+   +  +  +PF Q+      
Sbjct: 500 NLLENALRHSSEGGQIHLQ-ARRQGDRVLIAVEDNGEGIPFSQQGRIFEPFVQV----GR 554

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           +  G GLGL L K ++  + G+  + S P +G    ++ P+
Sbjct: 555 KKGGAGLGLELCKEIIQLHGGRIAVRSQPGQGARFYMLLPV 595


>gi|330949799|gb|EGH50059.1| response regulator receiver:ATP-binding region [Pseudomonas
           syringae Cit 7]
          Length = 917

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 76/243 (31%), Positives = 140/243 (57%), Gaps = 8/243 (3%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  A+K A + S  KS+FLA +SHEIRTPL  I+GF+ +++     P    R  +Y   
Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSELTP----RQFDYLGT 325

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I++S + +L I+N++LD SKIE+GK+ L   P +L + + + ++++   A+ K++ + + 
Sbjct: 326 IEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSL 385

Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQI---IISTTHTSNEEVILRVRDTG 745
              + P  +  D   ++QI  N++SNAI FT  G  +   ++      + ++ + V+DTG
Sbjct: 386 VYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAMLEDETEEHAQLRISVQDTG 445

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+++ ++    + F Q  NS   +  GTGLGL ++K +++   G+  + STP +G+   
Sbjct: 446 IGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFW 505

Query: 806 IIF 808
           I  
Sbjct: 506 ISL 508


>gi|330889404|gb|EGH22065.1| response regulator, sensor histidine kinase component GacS
           [Pseudomonas syringae pv. mori str. 301020]
          Length = 905

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 76/243 (31%), Positives = 140/243 (57%), Gaps = 8/243 (3%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  A+K A + S  KS+FLA +SHEIRTPL  I+GF+ +++     P    R  +Y   
Sbjct: 258 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSELTP----RQFDYLGT 313

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I++S + +L I+N++LD SKIE+GK+ L   P +L + + + ++++   A+ K++ + + 
Sbjct: 314 IEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSL 373

Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQI---IISTTHTSNEEVILRVRDTG 745
              + P  +  D   ++QI  N++SNAI FT  G  +   ++      + ++ + V+DTG
Sbjct: 374 VYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAMLEDETEEHAQLRISVQDTG 433

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+++ ++    + F Q  NS   +  GTGLGL ++K +++   G+  + STP +G+   
Sbjct: 434 IGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFW 493

Query: 806 IIF 808
           I  
Sbjct: 494 ISL 496


>gi|320334454|ref|YP_004171165.1| multi-sensor signal transduction histidine kinase [Deinococcus
           maricopensis DSM 21211]
 gi|319755743|gb|ADV67500.1| multi-sensor signal transduction histidine kinase [Deinococcus
           maricopensis DSM 21211]
          Length = 874

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 82/631 (12%), Positives = 204/631 (32%), Gaps = 23/631 (3%)

Query: 191 NDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK 250
                + +      +  + +             +          R   +    +   A +
Sbjct: 253 AAAEQIEQSGQFASAAAYPLLHDGRVQATLSIGLRDTPRWSDRDRAVFRAVGRSLSLAVE 312

Query: 251 DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310
                           +     E F  +  +   ++     +Q     +   L       
Sbjct: 313 RAEQTARLARRNAELAARTRALEGFAALTRDLGAQRDAHALVQRAQDVALSMLPEGYAVY 372

Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG---GLS 367
                D           + P    V   G  + A  + +    + +              
Sbjct: 373 YELDGDTWRLRAQTGDLRNPELQAVVDAGLPYAATRNLV--LPWTTRQAHYQDAYDKSTD 430

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
            L    +     A  PV++           A     +W   +   +  +           
Sbjct: 431 DLTALVQHVSTTATLPVLVNGVPVGVFGV-ALFSAHRWTAIDRAILETVVRSLGQALERA 489

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
                +     +   + R+++ E   L ++LE+ ++G+     +G +   N A   + G 
Sbjct: 490 QSVAELALRSQELERSNRELQRERSFLRAVLESLAEGVVACAPDGQLTLFNDAARTMHGL 549

Query: 488 P----VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
                  +     + +F       +    +  + +    +  +   +    +    SL  
Sbjct: 550 DASTLPPEAWPAHYKLFEADGATPLTTDRIPLVRAWQGERVRDAEIVIRPDDGPARSLVA 609

Query: 544 IIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
             + +           + MHD++E K  +  +  + +   + +     F    SH+++ P
Sbjct: 610 NGQPIFTEDGEPLGAVVAMHDLTERKVAEEAVRRSNEELRRSNQELEQFAYIASHDLQAP 669

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L A+  F+++I  +    L + R   Y   I +SG  +  +V+DLL  S++ + +  +  
Sbjct: 670 LRAMTSFADLIARKYADRL-DARGQVYLGQIAQSGKHMKRLVDDLLAFSRVTTEERTV-- 726

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719
           +P      +   +  +++  +     +       +P +L     + Q+  N++ NA+ + 
Sbjct: 727 QPTDSGAVLDGVLERMRVEMDAAGGQVDR---AALPTVLIGAGQLDQLFQNLVGNALKYH 783

Query: 720 PSGGQIIISTTHTSNEEV-ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
             G    +      +  +    V+D G+G+     E+  + F ++    + + EGTG+GL
Sbjct: 784 RPGVPPRVRVRAAPDGPLWHFTVQDNGIGIEPAYFERVFEIFQRLH--TREQYEGTGVGL 841

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            + K +V+ + G+ ++ STP +G+      P
Sbjct: 842 AICKKIVERHGGQLWLDSTPGEGSTFHFTLP 872



 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/406 (9%), Positives = 85/406 (20%), Gaps = 19/406 (4%)

Query: 65  TNYLDSENTFVFDPIPRTVRF-TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD 123
                S     F    +  R   W  D        S EL   +G          L D   
Sbjct: 4   AMSDPSATDARFRLALKAARQGAWEYDLRTNAGYRSPELRDLLGVQNGSP---SLADYLS 60

Query: 124 ILHIDPNNHIGDL---LKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRG 180
            +H D    I +    L+             I      + ++   L     + E    R 
Sbjct: 61  NVHADDRPRILEAFTQLRSGQIDESVVQYRFIRDDGRPIWVEQHTLVERDDHGE--AIRL 118

Query: 181 FGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKE------KYDIFSQQSPPPHL 234
           +G+              + L+       + +      E+        +          H 
Sbjct: 119 YGLSRDITARKQAEHALQDLNATLEARVQERTQQLEEERAAQAAFVAFTEAVGTDTDLHA 178

Query: 235 RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294
                V  L   + +             T    S  +      +                
Sbjct: 179 LATRAVEVLRAQFPNCTGGYYELDQHRWTLRVWS-EDLNASPDLLAILRAGLPQDTPSFA 237

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKY 354
               + E +      + +   ++                                     
Sbjct: 238 RVARTAEPVFFEEWDAAAEQIEQSGQFASAAAYPL---LHDGRVQATLSIGLRDTPRWSD 294

Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
           +        G   +L            +      +    +   A L      + ++ A+ 
Sbjct: 295 RDRAVFRAVGRSLSLAVERAEQTARLARRNAELAARTRALEGFAALTRDLGAQRDAHALV 354

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
               + A            E +    R+  +  ++   +L ++++A
Sbjct: 355 QRAQDVALSMLPEGYAVYYELDGDTWRLRAQTGDLRNPELQAVVDA 400



 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/142 (9%), Positives = 42/142 (29%), Gaps = 5/142 (3%)

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
            +    L+A   G    +        +  +  L G          +   +  +    +  
Sbjct: 13  ARFRLALKAARQGAWEYDLRTNAGYRSPELRDLLGVQNGSPSLADYLSNVHADDRPRILE 72

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM----HDISEWKQE 567
             T++ S  + +++ +       + + + +             ++ +     DI+  KQ 
Sbjct: 73  AFTQLRSGQIDESVVQYRFIRD-DGRPIWVEQHTLVERDDHGEAIRLYGLSRDITARKQA 131

Query: 568 KNKLSHAKKIAEKESSHKSDFL 589
           ++ L       E     ++  L
Sbjct: 132 EHALQDLNATLEARVQERTQQL 153



 Score = 39.2 bits (90), Expect = 3.1,   Method: Composition-based stats.
 Identities = 22/252 (8%), Positives = 63/252 (25%), Gaps = 17/252 (6%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-------DLLKRQNTW 143
             G L   ++      G  A  +          +   D    +           + +   
Sbjct: 532 PDGQLTLFNDAARTMHGLDASTLPPEAWPAHYKLFEADGATPLTTDRIPLVRAWQGERVR 591

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR---- 199
             +  + P +G      +     PI++ + E  G      +H            +R    
Sbjct: 592 DAEIVIRPDDGPAR--SLVANGQPIFTEDGEPLGA--VVAMHDLTERKVAEEAVRRSNEE 647

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
           L +    L +     S   +      +  +     +  +++ +  + Y  +         
Sbjct: 648 LRRSNQELEQFAYIASHDLQAPLRAMTSFADLIARKYADRLDARGQVYLGQIAQSGKHMK 707

Query: 260 PLLTSEES--SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
            L+    +   +  +E       +          ++     +   +     P++     +
Sbjct: 708 RLVDDLLAFSRVTTEERTVQPTDSGAVLDGVLERMRVEMDAAGGQVDRAALPTVLIGAGQ 767

Query: 318 GENLTPETVDKC 329
            + L    V   
Sbjct: 768 LDQLFQNLVGNA 779


>gi|303241000|ref|ZP_07327510.1| integral membrane sensor signal transduction histidine kinase
           [Acetivibrio cellulolyticus CD2]
 gi|302591425|gb|EFL61163.1| integral membrane sensor signal transduction histidine kinase
           [Acetivibrio cellulolyticus CD2]
          Length = 382

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 70/231 (30%), Positives = 125/231 (54%), Gaps = 4/231 (1%)

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI--EYANYIDRSGNLVLD 639
           ++ KS+F   +SHE++TPLT I+G  + +  Q+   +   R    ++   I ++   +L 
Sbjct: 117 TNEKSEFFYNMSHELKTPLTVILGAIQ-LIEQKNSVIEVDRRKSSKHITTIKQNCYRLLR 175

Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA 699
           ++N++LD+S+IESG +  +    ++   V E    V  YA +K + I     +       
Sbjct: 176 LINNMLDLSRIESGYIKSNMINCNIVYLVEEISLSVIPYAEQKSLTIEFDTTSEEIISAV 235

Query: 700 DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKP 759
           D+  +++I LN+LSNAI FT  GG+I I+ +   N++V + V+DTG+G+    L    + 
Sbjct: 236 DIDKIERIILNLLSNAIKFTNPGGKISITVSAK-NDKVHISVKDTGIGIPKDMLHNVFER 294

Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           + Q+ +S     EG+GLGL + K+ V+ + G   + S P  G+   I  P+
Sbjct: 295 YQQVDSSLTKGIEGSGLGLSIVKSFVELHDGNIKVKSEPNVGSEFHIDLPI 345


>gi|187734021|ref|YP_001881179.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Shigella boydii CDC 3083-94]
 gi|187431013|gb|ACD10287.1| sensor histidine kinase/response regulator EvgS [Shigella boydii
           CDC 3083-94]
          Length = 1197

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 88/419 (21%), Positives = 163/419 (38%), Gaps = 12/419 (2%)

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
            W+  +                  +    +       ++ +  +E ++    ++ ++  +
Sbjct: 528 TWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISFRKALSDSLPN 587

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--NTPSVMNHYLTEILSLDL 521
              ++N +G ++S N A    F          P         +  S  +    E      
Sbjct: 588 PTYVVNWQGNVISHNSAFEHYFTADYYKNAILPLENSDSPFKDVFSNAHEVTAETKENRT 647

Query: 522 RQTLEKIT-LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
             T       G  K        +        + Y     DI+E +   + L   +  A  
Sbjct: 648 IYTQVFEIDNGIEKRCINHWHTLCNLPASDHAVYICGWQDITETRDLIHALEVERNKAIN 707

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            +  KS FLA +SHEIRTP+++I+GF E++       L   + +E  +    +G  +L +
Sbjct: 708 ATVAKSQFLATMSHEIRTPISSIMGFLELLS---GSGLSKEQRVEAISLAYATGQSLLGL 764

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILA 699
           + ++LD+ KIESG   L  + V +   V          A  K I +  S    +   +  
Sbjct: 765 IGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPDHYLVKI 824

Query: 700 DLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMTNYELEKA 756
           D ++ KQ+  N+LSNA+ FT  G  +I  S  H  +   ++   + D+G G++  E ++ 
Sbjct: 825 DPQAFKQVLSNLLSNALKFTSEGAVKITTSLVHIDDNHAVIKMTIMDSGSGLSQEEQQQL 884

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            K + Q   S   +  G+GLGL + K ++    G   + S P  GT   I  P+  +  
Sbjct: 885 FKRYSQT--SAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVEISQQ 941


>gi|325092630|gb|EGC45940.1| DRK1 histidine kinase [Ajellomyces capsulatus H88]
          Length = 1288

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 76/255 (29%), Positives = 130/255 (50%), Gaps = 12/255 (4%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           +S  +    + + A++ AE  +  KS+FLA +SHEIRTP+  IIG +++  +        
Sbjct: 684 VSNLRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDD---LK 740

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
           P   E  N +    N +L I++D+LDISKIE+ +M +   P S+   V  A+  + + AN
Sbjct: 741 PYPREMLNVVHSLANSLLTIIDDILDISKIEANRMVIEKIPFSMRGTVFNALKTLAVKAN 800

Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV-- 737
           EK + +     +++P  +  D   ++QI LN++ NAI FT  G ++ ++ + +  EE   
Sbjct: 801 EKFLSLAYQVDSSVPDYVTGDPFRLRQIILNLVGNAIKFTEHG-EVKLTISKSDREECKD 859

Query: 738 -----ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
                   V DTG+G+   +L+     F Q   S   +  GTGLGL ++K +V+   G  
Sbjct: 860 NEYAFEFSVSDTGIGIEEDKLDLIFDTFQQADGSTTRKFGGTGLGLSISKRLVNLMGGDV 919

Query: 793 YIFSTPAKGTLIEII 807
           ++ S    G+     
Sbjct: 920 WVTSEYGLGSSFHFT 934


>gi|260168745|ref|ZP_05755556.1| PAS domain-containing protein [Brucella sp. F5/99]
          Length = 898

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 99/626 (15%), Positives = 208/626 (33%), Gaps = 51/626 (8%)

Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271
           +G      + Y   +  +    +R  ++V +     +     L       L+++E     
Sbjct: 145 RGQIVYANQAYARMTGATDADGIRPLDQVLASEPAASDAIYRLTNAVRDGLSAQEEVRIS 204

Query: 272 QEDFHTINLNQY--TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE-----NLTPE 324
                  N +      +     L+  ++     ++ +         ++            
Sbjct: 205 GGLSRGANGSLAPVWYRIKARALEGGAEFKGPLVAWQVADISEERAEQERFFQELQEAIN 264

Query: 325 TVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
            +D  P  FF     G + Y N +               +  L+ ++    ++       
Sbjct: 265 HLDHAPAGFFSANPAGRIIYLNATLAEWLGVDLTQFTPGSLTLNDIVAGSGMA------L 318

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
           +   +++      +     +      SLA+ F    +  +         I  +  +   +
Sbjct: 319 IKAVKAEPGTSRNTVIDLDLIKRNGQSLAVRFYHRVQTARDGMPGTTRTIVLDRAEGDDS 378

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG--YPVEDILRKPFTVFL 501
                   ++      +    IA ++ EG  L TN     +F      + I R+     +
Sbjct: 379 SVAQRSAEVRFTRFFNSAPMAIAAVDAEGHTLRTNARFLDIFSGVVDRDAIDRRVKLENV 438

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF----SSCYSLT 557
                    +                 T+    EE+ +   +                ++
Sbjct: 439 VHERDRETFNKALAAAFAGQASISPVDTVLPGNEERHIRFYMSPVTDLGGEAAEEAAVIS 498

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
             + +E K  +N+++ ++K+              ++H+    LTAII  S+++       
Sbjct: 499 AVETTEQKALENQMAQSQKM-----QAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNH--R 551

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
             +P + +  N I ++ N    +V  LL  S+    +  L  E + L + +++ + ++  
Sbjct: 552 ASDPSFPDIMN-IKQNANRAASLVRQLLAFSR----RQTLRPEVLDLTDVLAD-LRMLLA 605

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT------- 730
               K I ++     ++  + ADL   +Q+A+N+  NA    P GGQI + T        
Sbjct: 606 RLVGKDIELKIDHGRDLWPVKADLGQFEQVAVNLAVNARDAMPEGGQITLRTRNIPAADA 665

Query: 731 -------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
                      + V+  V DTG G+    LEK  +PF          G+GTGLGL +   
Sbjct: 666 AKLHYRDLPEADYVVFEVEDTGTGIPADVLEKIFEPFFTTK----EVGKGTGLGLSMVYG 721

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFP 809
           ++    G  Y  S   KGT  +I  P
Sbjct: 722 IIKQTGGFIYCDSEVGKGTTFKIFLP 747



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/238 (11%), Positives = 66/238 (27%), Gaps = 7/238 (2%)

Query: 319 ENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
           ++L    +D  P    +    G + YAN ++  +T     D I     +  L   P  SD
Sbjct: 125 QDLAHSFMDTQPEGTVISDPRGQIVYANQAYARMTGATDADGIRPLDQV--LASEPAASD 182

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
                   +                 +    +   + +    +A +         +  + 
Sbjct: 183 AIYRLTNAVRDGLSAQEEVRISGGLSRGANGSLAPVWYRIKARALEGGAEFKGPLVAWQV 242

Query: 438 VDTRINKRKMEIEVMQLC-SI--LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
            D    + + E    +L  +I  L+    G    N  G I+  N  +++  G  +     
Sbjct: 243 ADISEERAEQERFFQELQEAINHLDHAPAGFFSANPAGRIIYLNATLAEWLGVDLTQFTP 302

Query: 495 KPFT-VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
              T   +   +   +   +           ++   +    +   +     ++     
Sbjct: 303 GSLTLNDIVAGSGMALIKAVKAEPGTSRNTVIDLDLIKRNGQSLAVRFYHRVQTARDG 360



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 47/420 (11%), Positives = 103/420 (24%), Gaps = 38/420 (9%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD--ILHIDPNNHIGDLLKRQNTWYGKT 147
           D  G +   ++   +  G      I   L  V        D    + + ++   +   + 
Sbjct: 143 DPRGQIVYANQAYARMTGATDADGI-RPLDQVLASEPAASDAIYRLTNAVRDGLSAQEEV 201

Query: 148 TL-----WPIEGTNLYVPIDLAALPIYSRNREFSG-FRGFGIVHVNRVDNDPRALGKRLD 201
            +         G+   V   + A  +     EF G    + +  ++    +     + L 
Sbjct: 202 RISGGLSRGANGSLAPVWYRIKARALEGGA-EFKGPLVAWQVADISEERAEQERFFQELQ 260

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR------MKNKVSSLTEYYAHKDDVLK 255
           +  +HL     G  S       I+   +    L           ++           ++K
Sbjct: 261 EAINHLDHAPAGFFSANPAGRIIYLNATLAEWLGVDLTQFTPGSLTLNDIVAGSGMALIK 320

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN--NSKESFEYLSHRNHPSLSA 313
             K    TS  + +                     T ++          L        S 
Sbjct: 321 AVKAEPGTSRNTVIDLDLIKRNGQSLAVRFYHRVQTARDGMPGTTRTIVLDRAEGDDSSV 380

Query: 314 YFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLT-KYKSVDDIEIAGGLSTLLD 371
                E       +  P+    V + G+    N  FL +       D I+    L  +  
Sbjct: 381 AQRSAEVRFTRFFNSAPMAIAAVDAEGHTLRTNARFLDIFSGVVDRDAIDRRVKLENV-V 439

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
             +  +         +    +       L     N E  +     P              
Sbjct: 440 HERDRETFNKALAAAFAGQASISPVDTVL---PGNEERHIRFYMSPVTDLGGEAAEEAAV 496

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSI----------LEATSDGIAIINREGIILSTNRAV 481
               E  + +  + +M  +  ++ ++                 I + +    +L TN   
Sbjct: 497 ISAVETTEQKALENQM-AQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSD---LLLTNHRA 552



 Score = 48.5 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 45/134 (33%), Gaps = 12/134 (8%)

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY-LT 514
           S ++   +G  I +  G I+  N+A +++ G    D   +P    L     +    Y LT
Sbjct: 130 SFMDTQPEGTVISDPRGQIVYANQAYARMTGATDAD-GIRPLDQVLASEPAASDAIYRLT 188

Query: 515 EILSLDLRQTLEKITLG---STKEEKLLSLRIIIKKLPFSSC-------YSLTMHDISEW 564
             +   L    E    G         L  +   IK               +  + DISE 
Sbjct: 189 NAVRDGLSAQEEVRISGGLSRGANGSLAPVWYRIKARALEGGAEFKGPLVAWQVADISEE 248

Query: 565 KQEKNKLSHAKKIA 578
           + E+ +     + A
Sbjct: 249 RAEQERFFQELQEA 262


>gi|229114838|ref|ZP_04244251.1| hypothetical protein bcere0017_11350 [Bacillus cereus Rock1-3]
 gi|228668530|gb|EEL23959.1| hypothetical protein bcere0017_11350 [Bacillus cereus Rock1-3]
          Length = 466

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 68/229 (29%), Positives = 123/229 (53%), Gaps = 5/229 (2%)

Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
           + +FLA VSHE+RTPL+ I G+SE I +   G    P+  +    I +  + +  +V+DL
Sbjct: 239 RKEFLANVSHELRTPLSYIKGYSEAILD---GVAKGPQQEKVTQLIHKEADRMQRLVHDL 295

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704
           LD++++E     L  +P+   + + + +   +L   EK++ I T+    I  ++ D   +
Sbjct: 296 LDLAQLEGEHFPLKKQPIVFSQLIEDVLDTYELKFIEKKLRISTNLNPEII-VMIDEDRM 354

Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764
           +Q+  N+L NAI +T   G III+     +    L+++DTG+G+    LE   + F ++ 
Sbjct: 355 QQVLHNVLDNAIRYTNQNGNIIITLEQIDD-YCELKIKDTGIGIDAEHLENLGERFYRVD 413

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
            ++  +  GTGLGL + + +V  + G++ I S   KGT + I   + D 
Sbjct: 414 KARSRQHGGTGLGLAIVRQIVHIHDGEWKIESEKGKGTTVFIKLKIQDE 462


>gi|163843307|ref|YP_001627711.1| PAS domain-containing protein [Brucella suis ATCC 23445]
 gi|189024203|ref|YP_001934971.1| sensory box histidine kinase/response regulator [Brucella abortus
           S19]
 gi|225852542|ref|YP_002732775.1| PAS domain S-box-containing protein [Brucella melitensis ATCC
           23457]
 gi|237815464|ref|ZP_04594462.1| PAS domain S-box-containing protein [Brucella abortus str. 2308 A]
 gi|254697403|ref|ZP_05159231.1| PAS domain-containing protein [Brucella abortus bv. 2 str. 86/8/59]
 gi|254704329|ref|ZP_05166157.1| PAS domain-containing protein [Brucella suis bv. 3 str. 686]
 gi|254706771|ref|ZP_05168599.1| PAS domain-containing protein [Brucella pinnipedialis M163/99/10]
 gi|254714121|ref|ZP_05175932.1| PAS domain-containing protein [Brucella ceti M644/93/1]
 gi|254730301|ref|ZP_05188879.1| PAS domain-containing protein [Brucella abortus bv. 4 str. 292]
 gi|256044696|ref|ZP_05447600.1| PAS domain-containing protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256061128|ref|ZP_05451282.1| PAS domain-containing protein [Brucella neotomae 5K33]
 gi|256113590|ref|ZP_05454410.1| PAS domain-containing protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|256159755|ref|ZP_05457502.1| PAS domain-containing protein [Brucella ceti M490/95/1]
 gi|256255017|ref|ZP_05460553.1| PAS domain-containing protein [Brucella ceti B1/94]
 gi|163674030|gb|ABY38141.1| PAS domain S-box [Brucella suis ATCC 23445]
 gi|189019775|gb|ACD72497.1| sensory box histidine kinase/response regulator [Brucella abortus
           S19]
 gi|225640907|gb|ACO00821.1| PAS domain S-box-containing protein [Brucella melitensis ATCC
           23457]
 gi|237790301|gb|EEP64511.1| PAS domain S-box-containing protein [Brucella abortus str. 2308 A]
          Length = 898

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 99/626 (15%), Positives = 208/626 (33%), Gaps = 51/626 (8%)

Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271
           +G      + Y   +  +    +R  ++V +     +     L       L+++E     
Sbjct: 145 RGQIVYANQAYARMTGATDADGIRPLDQVLASEPAASDAIYRLTNAVRDGLSAQEEVRIS 204

Query: 272 QEDFHTINLNQY--TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE-----NLTPE 324
                  N +      +     L+  ++     ++ +         ++            
Sbjct: 205 GGLSRGANGSLAPVWYRIKARALEGGAEFKGPLVAWQVADISEERAEQERFFQELQEAIN 264

Query: 325 TVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
            +D  P  FF     G + Y N +               +  L+ ++    ++       
Sbjct: 265 HLDHAPAGFFSANPAGRIIYLNATLAEWLGVDLTQFTPGSLTLNDIVAGSGMA------L 318

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
           +   +++      +     +      SLA+ F    +  +         I  +  +   +
Sbjct: 319 IKAVKAEPGTSRNTVIDLDLIKRNGQSLAVRFYHRVQTARDGMPGTTRTIVLDRAEGDDS 378

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG--YPVEDILRKPFTVFL 501
                   ++      +    IA ++ EG  L TN     +F      + I R+     +
Sbjct: 379 SVAQRSAEVRFTRFFNSAPMAIAAVDAEGHTLRTNARFLDIFSGVVDRDAIDRRVKLENV 438

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF----SSCYSLT 557
                    +                 T+    EE+ +   +                ++
Sbjct: 439 VHERDRETFNKALAAAFAGQASISPVDTVLPGNEERHIRFYMSPVTDLGGEAAEEAAVIS 498

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
             + +E K  +N+++ ++K+              ++H+    LTAII  S+++       
Sbjct: 499 AVETTEQKALENQMAQSQKM-----QAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNH--R 551

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
             +P + +  N I ++ N    +V  LL  S+    +  L  E + L + +++ + ++  
Sbjct: 552 ASDPSFPDIMN-IKQNANRAASLVRQLLAFSR----RQTLRPEVLDLTDVLAD-LRMLLA 605

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT------- 730
               K I ++     ++  + ADL   +Q+A+N+  NA    P GGQI + T        
Sbjct: 606 RLVGKDIELKIDHGRDLWPVKADLGQFEQVAVNLAVNARDAMPEGGQITLRTRNIPAADA 665

Query: 731 -------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
                      + V+  V DTG G+    LEK  +PF          G+GTGLGL +   
Sbjct: 666 AKLHYRDLPEADYVVFEVEDTGTGIPADVLEKIFEPFFTTK----EVGKGTGLGLSMVYG 721

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFP 809
           ++    G  Y  S   KGT  +I  P
Sbjct: 722 IIKQTGGFIYCDSEVGKGTTFKIFLP 747



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/238 (11%), Positives = 66/238 (27%), Gaps = 7/238 (2%)

Query: 319 ENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
           ++L    +D  P    +    G + YAN ++  +T     D I     +  L   P  SD
Sbjct: 125 QDLAHSFMDTQPEGTVISDPRGQIVYANQAYARMTGATDADGIRPLDQV--LASEPAASD 182

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
                   +                 +    +   + +    +A +         +  + 
Sbjct: 183 AIYRLTNAVRDGLSAQEEVRISGGLSRGANGSLAPVWYRIKARALEGGAEFKGPLVAWQV 242

Query: 438 VDTRINKRKMEIEVMQLC-SI--LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
            D    + + E    +L  +I  L+    G    N  G I+  N  +++  G  +     
Sbjct: 243 ADISEERAEQERFFQELQEAINHLDHAPAGFFSANPAGRIIYLNATLAEWLGVDLTQFTP 302

Query: 495 KPFT-VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
              T   +   +   +   +           ++   +    +   +     ++     
Sbjct: 303 GSLTLNDIVAGSGMALIKAVKAEPGTSRNTVIDLDLIKRNGQSLAVRFYHRVQTARDG 360



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 47/420 (11%), Positives = 103/420 (24%), Gaps = 38/420 (9%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD--ILHIDPNNHIGDLLKRQNTWYGKT 147
           D  G +   ++   +  G      I   L  V        D    + + ++   +   + 
Sbjct: 143 DPRGQIVYANQAYARMTGATDADGI-RPLDQVLASEPAASDAIYRLTNAVRDGLSAQEEV 201

Query: 148 TL-----WPIEGTNLYVPIDLAALPIYSRNREFSG-FRGFGIVHVNRVDNDPRALGKRLD 201
            +         G+   V   + A  +     EF G    + +  ++    +     + L 
Sbjct: 202 RISGGLSRGANGSLAPVWYRIKARALEGGA-EFKGPLVAWQVADISEERAEQERFFQELQ 260

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR------MKNKVSSLTEYYAHKDDVLK 255
           +  +HL     G  S       I+   +    L           ++           ++K
Sbjct: 261 EAINHLDHAPAGFFSANPAGRIIYLNATLAEWLGVDLTQFTPGSLTLNDIVAGSGMALIK 320

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN--NSKESFEYLSHRNHPSLSA 313
             K    TS  + +                     T ++          L        S 
Sbjct: 321 AVKAEPGTSRNTVIDLDLIKRNGQSLAVRFYHRVQTARDGMPGTTRTIVLDRAEGDDSSV 380

Query: 314 YFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLT-KYKSVDDIEIAGGLSTLLD 371
                E       +  P+    V + G+    N  FL +       D I+    L  +  
Sbjct: 381 AQRSAEVRFTRFFNSAPMAIAAVDAEGHTLRTNARFLDIFSGVVDRDAIDRRVKLENV-V 439

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
             +  +         +    +       L     N E  +     P              
Sbjct: 440 HERDRETFNKALAAAFAGQASISPVDTVL---PGNEERHIRFYMSPVTDLGGEAAEEAAV 496

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSI----------LEATSDGIAIINREGIILSTNRAV 481
               E  + +  + +M  +  ++ ++                 I + +    +L TN   
Sbjct: 497 ISAVETTEQKALENQM-AQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSD---LLLTNHRA 552



 Score = 48.5 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 45/134 (33%), Gaps = 12/134 (8%)

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY-LT 514
           S ++   +G  I +  G I+  N+A +++ G    D   +P    L     +    Y LT
Sbjct: 130 SFMDTQPEGTVISDPRGQIVYANQAYARMTGATDAD-GIRPLDQVLASEPAASDAIYRLT 188

Query: 515 EILSLDLRQTLEKITLG---STKEEKLLSLRIIIKKLPFSSC-------YSLTMHDISEW 564
             +   L    E    G         L  +   IK               +  + DISE 
Sbjct: 189 NAVRDGLSAQEEVRISGGLSRGANGSLAPVWYRIKARALEGGAEFKGPLVAWQVADISEE 248

Query: 565 KQEKNKLSHAKKIA 578
           + E+ +     + A
Sbjct: 249 RAEQERFFQELQEA 262


>gi|20092758|ref|NP_618833.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
 gi|19918052|gb|AAM07313.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
          Length = 375

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 82/257 (31%), Positives = 139/257 (54%), Gaps = 16/257 (6%)

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           D++  K+ +  L  AKK AE  +  K+ F+  +SHE+RTPL ++IGFS+++    FGPL 
Sbjct: 126 DVNGQKELEITLLKAKKDAEATNRAKNSFIMNMSHELRTPLNSVIGFSDLLLEGAFGPL- 184

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
           N +  +Y N I  SG  +L+I+N+LLDIS++E+G+  L +E V +   + +    +   A
Sbjct: 185 NTKQSKYVNNILISGKNLLEIINNLLDISRLEAGEKTLKYENVDIASLIGDVRMSLLSPA 244

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
           + KRI +      ++  + AD+  ++QI  N++SNAI FTP+ G+++IS        + +
Sbjct: 245 SVKRITVELKIDPSVGNVRADITKLRQILYNLVSNAIKFTPAKGKVVIS-ACKKEGVLEV 303

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP-------LAKAMVDANMGKF 792
           +V DTG+G++    EK   PF Q  +S                    + +  VD + GK 
Sbjct: 304 KVSDTGIGLSKDSHEKIFMPFTQADSSAARGYG-------GAGLGLYIVRNFVDLHGGKI 356

Query: 793 YIFSTPAKGTLIEIIFP 809
           ++ S   KG++     P
Sbjct: 357 WVDSEVGKGSIFTFTLP 373


>gi|34558037|ref|NP_907852.1| sensor/response regulator hybrid [Wolinella succinogenes DSM 1740]
 gi|34483755|emb|CAE10752.1| SENSOR/RESPONSE REGULATOR HYBRID [Wolinella succinogenes]
          Length = 1263

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 82/246 (33%), Positives = 134/246 (54%), Gaps = 11/246 (4%)

Query: 569  NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
             +L  AK++AE  +  KS+FL+ +SHEIRTPL +I+GF+E++++   G     +   YA 
Sbjct: 783  AELLKAKELAESANRAKSEFLSNMSHEIRTPLNSILGFAEILQHSSLGI----KEQRYAE 838

Query: 629  YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
             I +SG +++DI+ND+LD+S++E+GKM +   PV L+  V E   L  + A EK + +  
Sbjct: 839  NILKSGKVLMDIINDILDLSRVEAGKMLIQKHPVELEALVREVYGLFLMKAKEKNLDLDL 898

Query: 689  SFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-----EVILRVR 742
                 +P+IL  D   V+QI  N++ NAI FT  G  + IS      E     E++LR++
Sbjct: 899  VIDERLPKILVIDGTRVRQILFNLVGNAIKFTHKG-YVRISVERGERESEGGIELVLRIK 957

Query: 743  DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
            D+G+G+   +  K  + F Q          GTGLGL + + +     G+  + S    G+
Sbjct: 958  DSGIGIAQADSNKIFEAFEQQSGQDNRLYGGTGLGLAICQRLARLMDGEISLVSQEGLGS 1017

Query: 803  LIEIIF 808
               +  
Sbjct: 1018 EFIVSL 1023


>gi|70989279|ref|XP_749489.1| two-component osmosensing histidine kinase (Bos1) [Aspergillus
           fumigatus Af293]
 gi|66847120|gb|EAL87451.1| two-component osmosensing histidine kinase (Bos1), putative
           [Aspergillus fumigatus Af293]
 gi|159128901|gb|EDP54015.1| two-component osmosensing histidine kinase (Bos1), putative
           [Aspergillus fumigatus A1163]
          Length = 1337

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 76/255 (29%), Positives = 129/255 (50%), Gaps = 12/255 (4%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           +S  +    + + A++ AE  +  KS+FLA +SHEIRTP+  IIG +++  +        
Sbjct: 738 VSNLRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDD---LK 794

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
           P   E  N +    N +L I++D+LDISKIE+ +M +   P ++   V  A+  + + AN
Sbjct: 795 PYTREMLNVVHNLANSLLTIIDDILDISKIEANRMVIESIPFTVRGTVFNALKTLAVKAN 854

Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV-- 737
           EK + +     N +P  ++ D   ++QI LN++ NAI FT  G ++ ++   +  E+   
Sbjct: 855 EKFLSLTYQVDNTVPDYVIGDPFRLRQIILNLVGNAIKFTEHG-EVKLTIRKSDREQCAP 913

Query: 738 -----ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
                   V DTG+G+   +L+     F Q   S   R  GTGLGL ++K +V+   G  
Sbjct: 914 NEYAFEFSVSDTGIGIEEDKLDLIFDTFQQADGSTTRRFGGTGLGLSISKRLVNLMGGDV 973

Query: 793 YIFSTPAKGTLIEII 807
           ++ S    G+     
Sbjct: 974 WVTSEYGHGSTFHFT 988


>gi|302503015|ref|XP_003013468.1| sensor histidine kinase/response regulator, putative [Arthroderma
           benhamiae CBS 112371]
 gi|291177032|gb|EFE32828.1| sensor histidine kinase/response regulator, putative [Arthroderma
           benhamiae CBS 112371]
          Length = 1345

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 74/265 (27%), Positives = 130/265 (49%), Gaps = 22/265 (8%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           +S  +    + + A++ AE  +  KS+FLA +SHEIRTP+  IIG +++  +        
Sbjct: 732 VSSLRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDD---LK 788

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
           P   E  N +    N +L I++D+LDISKIE+ +M +   P ++   V  A+  + + AN
Sbjct: 789 PYPREMLNVVHSLANSLLTIIDDILDISKIEANRMVIESIPFTMRGTVFNALKTLAVKAN 848

Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTT--------- 730
           EK + +     +++P  ++ D   ++QI LN++ NAI FT  G ++ +            
Sbjct: 849 EKFLNLTYQVDSSVPDYVIGDPFRLRQIILNLVGNAIKFTEHG-EVTLEIKKHVPPPPAE 907

Query: 731 -------HTSNEEV-ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
                     +E      V+DTG+G+   +L+     F Q   S   +  GTGLGL ++K
Sbjct: 908 GEPEREVCADDEYAYEFSVQDTGIGIAKDKLDMIFDTFQQADGSTTRKFGGTGLGLSISK 967

Query: 783 AMVDANMGKFYIFSTPAKGTLIEII 807
            +V+   G  ++ S   +G+     
Sbjct: 968 RLVNLMGGDVWVTSEYGRGSTFHFT 992


>gi|240849710|ref|YP_002971098.1| sensor histidine kinase protein [Bartonella grahamii as4aup]
 gi|240266833|gb|ACS50421.1| sensor histidine kinase protein [Bartonella grahamii as4aup]
          Length = 821

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 118/655 (18%), Positives = 240/655 (36%), Gaps = 41/655 (6%)

Query: 172 NREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231
               +G                 A  ++   +      +++    + +E   I   +   
Sbjct: 185 TGVIAGTVAIARFQDISKQQSENARLQKDIARLLTELRMQRNLLDLIQEPVWIKDCEGKV 244

Query: 232 -PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG 290
               R   +++   E      D+            E+   E    HT+   +  +     
Sbjct: 245 CFINRAFREMTDFREDSDEVGDLFNENTQRKTDETETIFQEH--VHTVIDGERHRFHLTR 302

Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFL 349
                   +F                       ET+D+      ++     L + N +F 
Sbjct: 303 ITTAEGMAAFARDDSAYENLAHELS-YVLQSHCETLDQISTAVAIFDTNQKLKFCNHAFK 361

Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNREN 409
           +L   ++   +E     +  L+  +     A  P      +         L       E+
Sbjct: 362 ILWPLET-SFLESEPSHTLFLERLREKGLIAEHPDWRAWKE--------ELFKAYRQTES 412

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI----LEATSDGI 465
           +  +  +P  +  +   N    G      +    K  +E     L  I    L+  S+G+
Sbjct: 413 NQQIWNLPDGRTVRVISNPHPQGGVTWLYENLTEKIDLERRYNTLIKIQGETLDKLSEGV 472

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
            +   +G +  +N A+SKL+  P   ++     T      +   +     +         
Sbjct: 473 VVFGTDGRLRLSNPALSKLWSLPYNLLVEGTHITQLQSHCSALTLGQEWDQFTKFITGFA 532

Query: 525 LEKITLGSTKE-EKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
            ++ T     + +  + +   +  LP      LT  ++++       L    +  E    
Sbjct: 533 EKRETYSGRIDLKNDMIIDYTLVPLPDGQ-TMLTFVNVTDTVHVARALQERNEALESADR 591

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
            +++F+  VS+E+RTPLT IIGFS+++++Q FG + N R  EY  +I      +L+IVND
Sbjct: 592 LRNEFVQHVSYELRTPLTNIIGFSDILRDQIFGSI-NKRQQEYLGHIHSESGTLLNIVND 650

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703
           +LD++ +++G M L  + V++ +A+ +A++ ++   N + I +    + ++  I AD + 
Sbjct: 651 ILDLATLDAGIMELDIKSVNIADAMIQAVARIEDRLNGRHITLLQQISPSLNSISADEKR 710

Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
           + QI +N+LSNAI+F      I        +  ++  V + G  +    L++  K F   
Sbjct: 711 LHQIFVNVLSNAINFATEASTIEFCVDEQDDN-IVFSVHNEGSDIPEDVLDRIFKRF--- 766

Query: 764 PNSQQIR--------GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            +S            G        L K+ V+ + G   I +   KGT ++  FPL
Sbjct: 767 -SSHSHHGGRAGAGLGL------SLVKSFVELHGGHVEILTGSGKGTTVKCFFPL 814


>gi|156742625|ref|YP_001432754.1| PAS/PAC sensor hybrid histidine kinase [Roseiflexus castenholzii
           DSM 13941]
 gi|156233953|gb|ABU58736.1| PAS/PAC sensor hybrid histidine kinase [Roseiflexus castenholzii
           DSM 13941]
          Length = 637

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 89/519 (17%), Positives = 166/519 (31%), Gaps = 36/519 (6%)

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364
                 +     E + L  E + +   P +                          ++  
Sbjct: 1   MTGAERVRLLLIEDDELHIELIQRAFEP-WQSLFDLTVAHTLREARALLDDDAFRFDLLI 59

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
               L D   L   +   P+ L          + R+            +        +  
Sbjct: 60  CDWRLPDGDGLELLDPSDPLPLLVMTG---YGNERVAVEAIRAGALDYIVKSEAAFIDLP 116

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
                              ++ +     +   I E TSD IAI++ +      + +   L
Sbjct: 117 RVAQHALRQWRAIQTQYRTEQALREIEARYRLITENTSDLIAILDEQHRFRYVSPSAVNL 176

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
            G   E+++       L  +       Y  EI +L  R T       +    +     I 
Sbjct: 177 LGRTPEELIGHDAFDDLHPDDMPNSAAYWQEI-ALRKRTTATFRYRHAGGSWRWFECDIK 235

Query: 545 IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
                 +    +   DI+  ++ + +L   +K+              V+H+    L  I 
Sbjct: 236 AVVQDGAPAAIVIARDITARRELEERLLQMQKMD-----ALGRLSGGVAHDFNNLLAVIA 290

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           G +E    ++  P  +P  +E    I  +      +   LL  +     +      P+ L
Sbjct: 291 GCTE--LARQSLPDDHPAMLELIE-IQHATERASALTRQLLAFAH----RQKFDPRPIDL 343

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724
           +  + +   L++     + I + T  A ++  + AD   ++Q+ +N+  NA      GG 
Sbjct: 344 NALIQDMHKLLRRLI-REDITLHTRLAPDLWHVRADPGQIEQVLVNLAVNARDAMAVGGA 402

Query: 725 IIIST--------------THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           + I+T              +  + E V L V DTG+GM      +A +PF          
Sbjct: 403 LTIATTNVVADEAFERRYPSLKAGEYVCLTVSDTGIGMDEETRRRAFEPFFTTKKP---- 458

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           GEGTGLGL     +V  + G   + S P  GT++ I  P
Sbjct: 459 GEGTGLGLATCYGIVTRHGGAIDLASEPGCGTVVTIYLP 497



 Score = 55.4 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/367 (7%), Positives = 71/367 (19%), Gaps = 10/367 (2%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D     + +S      +G    ++IG    D      +  +      +  +        
Sbjct: 160 LDEQHRFRYVSPSAVNLLGRTPEELIGHDAFDDLHPDDMPNSAAYWQEIALRKRTTATFR 219

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                G+  +   D+ A+                I        +      ++ K  +   
Sbjct: 220 YRHAGGSWRWFECDIKAVVQDGAPAAIV------IARDITARRELEERLLQMQKMDALGR 273

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
                          I             +  + L            +     L +    
Sbjct: 274 LSGGVAHDFNNLLAVIAGCTELARQSLPDDHPAMLELIEIQHATERASALTRQLLAFAHR 333

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSK---ESFEYLSHRNHPSLSAYFDEGENLTPET 325
                    +N       +    L                              NL    
Sbjct: 334 QKFDPRPIDLNALIQDMHKLLRRLIREDITLHTRLAPDLWHVRADPGQIEQVLVNLAVNA 393

Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
            D   +   +        A+ +F          +        T +   + +   A +P  
Sbjct: 394 RDAMAVGGALTIATTNVVADEAFERRYPSLKAGEYVCLTVSDTGIGMDEETRRRAFEPFF 453

Query: 386 LYRSDRTCIA-ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
             +          A  + I      ++ +   P             +    +  +T    
Sbjct: 454 TTKKPGEGTGLGLATCYGIVTRHGGAIDLASEPGCGTVVTIYLPRASVEGAQASETVDQS 513

Query: 445 RKMEIEV 451
             ++   
Sbjct: 514 AGLDGSE 520


>gi|113868406|ref|YP_726895.1| signal transduction histidine kinase, phosphate regulon sensor PhoR
           [Ralstonia eutropha H16]
 gi|113527182|emb|CAJ93527.1| signal transduction histidine kinase, phosphate regulon sensor PhoR
           [Ralstonia eutropha H16]
          Length = 460

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 77/408 (18%), Positives = 157/408 (38%), Gaps = 35/408 (8%)

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDT-----RINKRKMEIEVMQLCSILEATSDGI 465
                +      + P  +   G     +       R    ++E +  +    ++A+ +G+
Sbjct: 52  RLWKVLDAPVYGEIPSALGLWGEVYYRLHRLVKRWRTQVLQVEQQHTRFIQAIQASPNGV 111

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
            +++    I   N    + FG      +R+  T  +         HYLT        Q  
Sbjct: 112 LMLDDADQIEWCNDVAEQHFGLNARRDVRQRITHLIR---RPEFVHYLTR-------QRF 161

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
           +   +     E   S+  +       +   +   DI++ +  +              + +
Sbjct: 162 DDPLVMRDMGEHKHSVIAVQILPYGDNRKLVITQDITKLENTE--------------AMR 207

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
            DF+A VSHE++TPLT + GF E +++    P+       Y + +      +  IV DLL
Sbjct: 208 RDFVANVSHELKTPLTVLTGFLETVRD---LPVSEDDRRRYIDMMLAQSVRMQSIVEDLL 264

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
            ++K+ES       + V +   V+      +  +  +   +       +  +      + 
Sbjct: 265 ALAKLESDAQPPGNDIVPIRAMVAHLTHDAEALSQGRH-QVSAEIDPTVG-MRGAETELL 322

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
               N++SNA+ +TP GG+I I          +  V DTG+G+    + +  + F ++  
Sbjct: 323 SALGNLVSNAVRYTPDGGRITIRLAWEE-GHAVFSVADTGLGIAPEHIPRLTERFYRVDR 381

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
           S+     GTGLGL + K ++  +     + S   +G++  +IFPL  +
Sbjct: 382 SRSRDTGGTGLGLAIVKHVLSRHHADLRVTSEEGRGSVFRVIFPLERS 429


>gi|167582295|ref|ZP_02375169.1| histidine protein kinase PhoR [Burkholderia thailandensis TXDOH]
          Length = 436

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 76/411 (18%), Positives = 152/411 (36%), Gaps = 35/411 (8%)

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT-----RINKRKMEIEVMQLCSILEATS 462
                   +      + P      G     +           R++E +  +    ++A+ 
Sbjct: 49  HTQRLWRLLDAPVYGEVPSAPGIWGEIYYRLHKLAKQWHAQVRQVEQQHSRFIQAIQASP 108

Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522
           +G+A+++    I   N      FG   +  LR+  T  +         +           
Sbjct: 109 NGVAMLDDRDQIEWCNAIAEVHFGLDAKRDLRQHITHLVRHPDFVRYLN----------G 158

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES 582
           Q  ++  +         ++  +       +   L   DI+E ++                
Sbjct: 159 QHYDETLVMRGMGGNRQNVLAVQVFPYGENRKLLLTQDITELERT--------------D 204

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
           + + DF+A VSHE++TPLT + GF E ++     PL +     Y   +++  + +  IV 
Sbjct: 205 AMRRDFVANVSHELKTPLTVLSGFLETMRE---LPLSDDERARYLELMEQQASRMRHIVT 261

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702
           DLL ++K+E          V +   +       Q  +N     I       +  +     
Sbjct: 262 DLLVLAKLEGESKPPADREVDMRTVLDHLKDDAQTLSNGHH-EITFKVDETL-AVTGAQT 319

Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
            +     N+++NAI +TP GG I +        + +  V D+G+G+   +L +  + F +
Sbjct: 320 EIFSALGNLVTNAIRYTPDGGTIRVEWR-RDGAQAVFSVTDSGLGIPAADLPRLTERFYR 378

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
           +  S+     GTGLGL + K ++  +  +  I S   +G+     FP + T
Sbjct: 379 VDRSRSRDTGGTGLGLAIVKHVLQRHDAQLSIQSEEGRGSTFSARFPAHRT 429


>gi|153820784|ref|ZP_01973451.1| sensor protein TorS [Vibrio cholerae B33]
 gi|229510010|ref|ZP_04399490.1| sensor protein TorS [Vibrio cholerae B33]
 gi|229516429|ref|ZP_04405876.1| sensor protein TorS [Vibrio cholerae RC9]
 gi|229605664|ref|YP_002876368.1| sensor protein TorS [Vibrio cholerae MJ-1236]
 gi|255746528|ref|ZP_05420475.1| sensor protein TorS [Vibrio cholera CIRS 101]
 gi|262158884|ref|ZP_06029997.1| sensor protein TorS [Vibrio cholerae INDRE 91/1]
 gi|126521827|gb|EAZ79050.1| sensor protein TorS [Vibrio cholerae B33]
 gi|229346310|gb|EEO11281.1| sensor protein TorS [Vibrio cholerae RC9]
 gi|229352455|gb|EEO17395.1| sensor protein TorS [Vibrio cholerae B33]
 gi|229372150|gb|ACQ62572.1| sensor protein TorS [Vibrio cholerae MJ-1236]
 gi|255736282|gb|EET91680.1| sensor protein TorS [Vibrio cholera CIRS 101]
 gi|262029457|gb|EEY48108.1| sensor protein TorS [Vibrio cholerae INDRE 91/1]
          Length = 984

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 72/238 (30%), Positives = 118/238 (49%), Gaps = 8/238 (3%)

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
           ++ AE+ S  KS FLA +SHEIRTP+  ++G + ++++             Y   I+RSG
Sbjct: 460 RQQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLQDTTLTST----QQHYVQVINRSG 515

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
             +L I+ND+LD SKIE+G + +H     L   VSE   L+Q  A EK I +      ++
Sbjct: 516 RSLLAILNDVLDYSKIEAGHLEIHHTHFDLYRLVSETHELMQSRAREKGITLTYHIDEDV 575

Query: 695 PRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-VILRVRDTGVGMTNYE 752
            +    D   + Q+  N++ N I FT  G ++ I      + + +   V D+G+G+   E
Sbjct: 576 TQYWQGDEIRIGQVLNNLVGNGIKFTDQG-EVRIRIRLAPDGQGIRFAVEDSGIGIAEEE 634

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
                  F Q    +  +  GTGLGL +++ +V A  G+  + S   +G+      PL
Sbjct: 635 QATLFDAFTQADAGR-RKLGGTGLGLAISRKLVQAMGGELQLASQLGQGSCFWFTLPL 691


>gi|322419718|ref|YP_004198941.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Geobacter sp. M18]
 gi|320126105|gb|ADW13665.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Geobacter sp. M18]
          Length = 733

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 88/598 (14%), Positives = 190/598 (31%), Gaps = 56/598 (9%)

Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
           D +      L + E + +   E     +      +     +   +    E L  +    +
Sbjct: 154 DRISILNLLLSSYEIAIMRNSELVRVRDEMLLLNESLEEKVAERTFAIREEL--KKRKEV 211

Query: 312 SAYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
                E E      ++        +   G ++  N     + +Y S + +     +  L+
Sbjct: 212 EEALKESEERHRVIMETANDAIICIAPPGTVYLWNKKAEEIFRYTSGEALGK--SVPDLI 269

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
              +          +L R         +   T++                  Q       
Sbjct: 270 IPDRYHAGEQEAIALLLRDGSGPRVGKSTELTLRKKSGEEFPAELSLAAL--QIRGEWQA 327

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490
            GI  +    +  +++++     L  I+++    +       ++   NR  +++ G P  
Sbjct: 328 IGIVRDITARKQAEQELQKVKNYLSDIIDSMPSVLIGFCANEVVTQWNREAARITGIPAS 387

Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
           + + +     + +         L           LEK+ L    E     L +       
Sbjct: 388 EAIGRQVGALIPE--FYSWIETLRSQARTRRSAALEKLLLTRGGERSFYDLILYRLSSDS 445

Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
                + + D++E    +  +   +K+            A ++HEI  PL  I   ++ I
Sbjct: 446 EQGAVVRIEDVTERTHIQEMMVQTEKMM-----SIGGLAAGMAHEINNPLGIISQAAQNI 500

Query: 611 KNQRFGPL------------GNPRYIEYANY---------IDRSGNLVLDIVNDLLDISK 649
           + + F  L                   Y            I ++ +    IV ++L  S+
Sbjct: 501 ERRLFADLPANLQAASDLGVDLAALRRYLEQRQVPQFVDSIRQAASRAAKIVTNMLQFSR 560

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR------ILIRTSFANNIPRILADLRS 703
               +  +  +P SL+  + +A+       + K+      + I   +  ++P +      
Sbjct: 561 ----QAPMAKQPASLERLIEQAVEFAANDYDLKKKYDFRAVEIVKEYQPDMPEVPVVAVE 616

Query: 704 VKQIALNILSNAIHFTPSGG-----QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
           ++Q+ LN++ NA     +       +I      T  +  +L V D G GM    + +  +
Sbjct: 617 IEQVILNLVRNAAQAMSANTPERRPRITFRLR-TEGKYAVLEVEDCGPGMDEKVMRRVFE 675

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDA-NMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
           PF            GTGLGL ++  +V A + G   + S P  G    I  PL + + 
Sbjct: 676 PFFTTKEPGV----GTGLGLSVSYMIVTANHKGLLEVASAPGTGACFTIRLPLKEEAQ 729



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/295 (9%), Positives = 68/295 (23%), Gaps = 32/295 (10%)

Query: 93  GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTW------YGK 146
           G +   +++  +     + + +G  + D+               L  ++          +
Sbjct: 240 GTVYLWNKKAEEIFRYTSGEALGKSVPDLIIPDRYHAGEQEAIALLLRDGSGPRVGKSTE 299

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
            TL    G      + LAAL I         ++  GIV             +++    S 
Sbjct: 300 LTLRKKSGEEFPAELSLAALQIRGE------WQAIGIVRDITARKQAEQELQKVKNYLSD 353

Query: 207 LHEIKKGHS----------SVEKEKYDIFSQQSPPPHLRMKNKVSS--LTEYYAHKDDVL 254
           + +                   +E   I    +     R    +     +     +    
Sbjct: 354 IIDSMPSVLIGFCANEVVTQWNREAARITGIPASEAIGRQVGALIPEFYSWIETLRSQAR 413

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
                 L     +   E+  +  I     +  +    ++        ++      +    
Sbjct: 414 TRRSAALEKLLLTRGGERSFYDLILYRLSSDSEQGAVVRIEDVTERTHIQEMMVQTEKMM 473

Query: 315 FDEGENLTPETVDKCPIPFFVYSHGNLFY-------ANPSFLLLTKYKSVDDIEI 362
              G           P+     +  N+         AN           +  +  
Sbjct: 474 SIGGLAAGMAHEINNPLGIISQAAQNIERRLFADLPANLQAASDLGV-DLAALRR 527



 Score = 40.4 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 19/211 (9%), Positives = 53/211 (25%), Gaps = 1/211 (0%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150
           A+  + + + E  +  G  A + IG ++  +    +           + + +   +  L 
Sbjct: 367 ANEVVTQWNREAARITGIPASEAIGRQVGALIPEFYSWIETLRSQA-RTRRSAALEKLLL 425

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
              G   +  + L  L   S                 +           +    + +   
Sbjct: 426 TRGGERSFYDLILYRLSSDSEQGAVVRIEDVTERTHIQEMMVQTEKMMSIGGLAAGMAHE 485

Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270
                 +  +      ++            S L    A     L+  + P          
Sbjct: 486 INNPLGIISQAAQNIERRLFADLPANLQAASDLGVDLAALRRYLEQRQVPQFVDSIRQAA 545

Query: 271 EQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301
            +      N+ Q++++        + +   E
Sbjct: 546 SRAAKIVTNMLQFSRQAPMAKQPASLERLIE 576


>gi|332139982|ref|YP_004425720.1| putative signal transduction histidine kinase two-component system
           with Protein-glutamate methylesterase domain
           [Alteromonas macleodii str. 'Deep ecotype']
 gi|327550004|gb|AEA96722.1| putative signal transduction histidine kinase two-component system
           with Protein-glutamate methylesterase domain
           [Alteromonas macleodii str. 'Deep ecotype']
          Length = 941

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 74/241 (30%), Positives = 123/241 (51%), Gaps = 10/241 (4%)

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
           +  K+ FLA +SHEIRTP+  IIG  E++ +              A  I RS   +L I+
Sbjct: 573 NVAKTQFLANMSHEIRTPMNGIIGSCELMLDSEL----PEHVAARAKVISRSAANLLMIL 628

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-AD 700
           + +LD SKIESGKM +  +  ++ E +  +  L +  A  K   I  +  + +P++L  D
Sbjct: 629 DSILDYSKIESGKMRIDIQSCAIRELLESSCELYRHSAKAKEYDIHLNVDSGVPKVLDID 688

Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPF 760
              + QI  N+LSNA+ FT  G  + ++ ++  +  + + V DTGVG+   +L+   + F
Sbjct: 689 AGKISQIINNLLSNAVKFTSEGS-VSVNVSYAHHA-LKVVVSDTGVGIAPEKLDLIFEQF 746

Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY---DTSHPH 817
            Q  ++      GTGLGLP++K +++   G+ ++ S   KGT      P     +  H  
Sbjct: 747 EQADSTTTRHFGGTGLGLPISKGLIELLDGQLFVESELGKGTRFTFHIPAAVGKEEEHEP 806

Query: 818 D 818
           D
Sbjct: 807 D 807


>gi|330811212|ref|YP_004355674.1| Two-component system, sensor kinase GacS [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327379320|gb|AEA70670.1| Two-component system, sensor kinase GacS [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 916

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 79/243 (32%), Positives = 143/243 (58%), Gaps = 8/243 (3%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  A+K A + S  KS+FLA +SHEIRTPL  I+GF+ +++     P    R ++Y   
Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSELTP----RQLDYLGT 325

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I++S + +L I+N++LD SKIE+GK+ L   P +L + + + ++++   A+ K++ + + 
Sbjct: 326 IEKSADSLLGIINEILDFSKIEAGKLVLDSIPFNLRDLLQDTLTILAPAAHAKQLELVSL 385

Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQI---IISTTHTSNEEVILRVRDTG 745
              + P  ++ D   +KQI  N++SNAI FT  G  +   ++   H  + ++ + ++DTG
Sbjct: 386 VYRDTPLSLVGDPLRLKQILTNLVSNAIKFTREGTIVARAMLEDEHEDSVQLRISIQDTG 445

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G++N ++    + F Q  NS   +  GTGLGL ++K +V+   G+  + STP +G+   
Sbjct: 446 IGLSNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLVEQMGGEIGVDSTPGEGSEFW 505

Query: 806 IIF 808
           I  
Sbjct: 506 ISL 508


>gi|308273637|emb|CBX30239.1| hypothetical protein N47_D30480 [uncultured Desulfobacterium sp.]
          Length = 964

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 88/531 (16%), Positives = 176/531 (33%), Gaps = 46/531 (8%)

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLF-YANPSFLLLTKYKSVDDIEI 362
                 +      E E       +       +          N  F  L+ YK  D    
Sbjct: 287 EIEERMAAQKKLQESEQRYRSVFENTGTAIIIIEEDTTISIVNSEFEKLSGYKKGDIERK 346

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
              +          D +  K     R + +    S     +         +         
Sbjct: 347 MSWM----QFAAADDLDRAKRHRQMRIEGSADVPSEDEFRLTGAAGTEKVVLIKVGTI-- 400

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAV 481
             P          +    ++ +  +     +L  IL++   GI I+N     I+  N   
Sbjct: 401 --PGTGLTIASLLDISSRKMAEEALRESEKRLKMILDSVYAGIMIVNAGNFRIIEANSTA 458

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
           + + G     ++ K  + +L              I       T     L  T   + + +
Sbjct: 459 ADMIGIQKHQLVGKICSDYLSSGNDDNCPIINQNIK------TYHMEGLLKTANGQTIPI 512

Query: 542 --RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES--SHKSDFLARVSHEIR 597
              +    L    C+  T  +I E K  + +    +    +             ++H+  
Sbjct: 513 LKTVTPVYLGGVKCFLETFINIRELKTAQEEKIILESRLSQAQKLEAIGTLAGGIAHDFN 572

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
             L  I+G++++       P  N    +Y   I    N   ++V  +L  S+    K N 
Sbjct: 573 NTLCMIMGYADLAI--LDAPKCNSSMKDYLEGILVGCNRSKEVVKQILTFSR----KGNQ 626

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
             + V +   + EA+  ++       I I+ S +     +LAD   + Q+ +N+ +NA+H
Sbjct: 627 ELKNVLIYPVIKEALKFLRSTLPS-TIEIKQSVSTENNMVLADATQIHQVLMNLCTNALH 685

Query: 718 FTPSGG--------QIIISTT-------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
               GG         ++IS           +   ++L V DTG GM+   + +   P+  
Sbjct: 686 AMDPGGGTLEVKLNTVVISEENHSSYQDVATGRYLMLSVSDTGCGMSREVMNRIFDPYFT 745

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
             +    + +G+GLGL +A  +++++ GK  + S    G+   ++ PL +T
Sbjct: 746 TKD----KTKGSGLGLSVAHGIINSHGGKILVRSRQGHGSTFHVLLPLVET 792



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 53/150 (35%), Gaps = 1/150 (0%)

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490
           + +  E  +    ++K++    +  S+ E T   I II  +  I   N    KL GY   
Sbjct: 282 DELSREIEERMAAQKKLQESEQRYRSVFENTGTAIIIIEEDTTISIVNSEFEKLSGYKKG 341

Query: 491 DILRK-PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
           DI RK  +  F   +       +    +        E     +        + I +  +P
Sbjct: 342 DIERKMSWMQFAAADDLDRAKRHRQMRIEGSADVPSEDEFRLTGAAGTEKVVLIKVGTIP 401

Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579
            +     ++ DIS  K  +  L  ++K  +
Sbjct: 402 GTGLTIASLLDISSRKMAEEALRESEKRLK 431


>gi|195978473|ref|YP_002123717.1| alkaline phosphatase synthesis sensor protein PhoR [Streptococcus
           equi subsp. zooepidemicus MGCS10565]
 gi|195975178|gb|ACG62704.1| alkaline phosphatase synthesis sensor protein PhoR [Streptococcus
           equi subsp. zooepidemicus MGCS10565]
          Length = 432

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 84/427 (19%), Positives = 175/427 (40%), Gaps = 35/427 (8%)

Query: 390 DRTCIAASARLHTIQWNRE----NSLAMTFIPFEKANQFPENMPQNGIEPED-VDTRINK 444
                +    +   +W RE    +   +T           +         E   D    +
Sbjct: 29  TGLVASFYVLIMLFRWEREFRALHHHLLTASDHFLLVGQADLSAYAKQLTELKSDLLQKE 88

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            +++     + ++    + G+ +++ +  +L T+++       P      KP  V LE  
Sbjct: 89  ARLKALSKNVEAVTSHLTMGMLLVSNQRELLLTSKS------LPAYFPEAKPPFVVLEDL 142

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCYSLTMHDIS 562
               +   + ++      QTL+K   G    + +L + ++    +        + ++D++
Sbjct: 143 KRIDLIALVNQVFDQK--QTLKKELTGLHDGDLILEVTLVPIFNQSHVVKEVLVLLYDLT 200

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
             +  +                  +F+A  SHE+RTP+T+I GF+E IK           
Sbjct: 201 AIRHYE--------------RLNLEFIANASHELRTPVTSIKGFAETIKEMPDDETSLKE 246

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             ++ + I      +  IV  LL +SK  + K  L      L   +      ++    +K
Sbjct: 247 --DFLDIIYNESLRLERIVEHLLTLSK--ANKTPLDLTEFQLRSFLLYTGQSMRPQLEQK 302

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           ++ +  +  ++I  + +D   + QI LN+LSNAI +T +GG+I +S+   +   V + V 
Sbjct: 303 QLELSYALEDSI-VVTSDQYLLSQIMLNLLSNAIQYTDNGGRIQLSSQRVAGG-VAITVA 360

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG+G++  EL++  + F ++   +  +  GTGLGL + K +     G+  + S   +G+
Sbjct: 361 DTGIGISQIELDRIFERFYRVNKGRSRQSGGTGLGLAIVKELSQLLGGQITVTSQLGEGS 420

Query: 803 LIEIIFP 809
              +  P
Sbjct: 421 QFTLFLP 427


>gi|121710420|ref|XP_001272826.1| two-component osmosensing histidine kinase (Bos1), putative
           [Aspergillus clavatus NRRL 1]
 gi|119400976|gb|EAW11400.1| two-component osmosensing histidine kinase (Bos1), putative
           [Aspergillus clavatus NRRL 1]
          Length = 1341

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 76/255 (29%), Positives = 129/255 (50%), Gaps = 12/255 (4%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           +S  +    + + A++ AE  +  KS+FLA +SHEIRTP+  IIG +++  +        
Sbjct: 742 VSNLRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDD---LK 798

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
           P   E  N +    N +L I++D+LDISKIE+ +M +   P ++   V  A+  + + AN
Sbjct: 799 PYTREMLNVVHNLANSLLTIIDDILDISKIEANRMVIESIPFTVRGTVFNALKTLAVKAN 858

Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV-- 737
           EK + +     N +P  ++ D   ++QI LN++ NAI FT  G ++ ++   +  E+   
Sbjct: 859 EKFLSLTYQVDNTVPDYVIGDPFRLRQIILNLVGNAIKFTEHG-EVKLTIRKSDREQCAP 917

Query: 738 -----ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
                   V DTG+G+   +L+     F Q   S   R  GTGLGL ++K +V+   G  
Sbjct: 918 NEYAFEFSVSDTGIGIEEDKLDLIFDTFQQADGSTTRRFGGTGLGLSISKRLVNLMGGDV 977

Query: 793 YIFSTPAKGTLIEII 807
           ++ S    G+     
Sbjct: 978 WVTSEYGHGSTFHFT 992


>gi|87307352|ref|ZP_01089497.1| sensory transduction histidine kinase [Blastopirellula marina DSM
           3645]
 gi|87290092|gb|EAQ81981.1| sensory transduction histidine kinase [Blastopirellula marina DSM
           3645]
          Length = 830

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 83/252 (32%), Positives = 136/252 (53%), Gaps = 7/252 (2%)

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           Q  ++L  A+  AE  +  KS FLA +SHE+RTP+TAI+GF+E +           R  E
Sbjct: 396 QSHDELLAAQHRAESANLAKSRFLATMSHELRTPMTAILGFTENLLESPDYGSLEER-NE 454

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
             N I R+G  +L +++D+LD+SKIE+G+  +  E  S  +  +E I +++  A  +R+ 
Sbjct: 455 TLNTILRNGEHLLGLIDDVLDLSKIEAGRTEIQTELCSPGQIANEVIGILKKRAASRRLT 514

Query: 686 IRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT----SNEEVILR 740
           +R      IP  I  D   ++QI LN++ NA+ FT  GG I +  + T        + +R
Sbjct: 515 LRIRCKTPIPAEIETDALRLRQILLNLVGNALKFTEKGG-ISLELSSTFGDVGRRMLRVR 573

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V DTG G+ + +LE   +PF Q+ ++      G GLGLP+++ + +   G   + ST   
Sbjct: 574 VEDTGPGIPSDQLEHIFEPFVQVDSTTSRSFGGAGLGLPISRRLAELLGGTLIVESTIGT 633

Query: 801 GTLIEIIFPLYD 812
           G+   +  P+ D
Sbjct: 634 GSAFTLSVPVGD 645


>gi|330941410|gb|EGH44230.1| response regulator receiver:ATP-binding region [Pseudomonas
           syringae pv. pisi str. 1704B]
          Length = 917

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 76/243 (31%), Positives = 140/243 (57%), Gaps = 8/243 (3%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  A+K A + S  KS+FLA +SHEIRTPL  I+GF+ +++     P    R  +Y   
Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSELTP----RQFDYLGT 325

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I++S + +L I+N++LD SKIE+GK+ L   P +L + + + ++++   A+ K++ + + 
Sbjct: 326 IEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSL 385

Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQI---IISTTHTSNEEVILRVRDTG 745
              + P  +  D   ++QI  N++SNAI FT  G  +   ++      + ++ + V+DTG
Sbjct: 386 VYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAMLEDETEEHAQLRISVQDTG 445

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+++ ++    + F Q  NS   +  GTGLGL ++K +++   G+  + STP +G+   
Sbjct: 446 IGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFW 505

Query: 806 IIF 808
           I  
Sbjct: 506 ISL 508


>gi|222148810|ref|YP_002549767.1| two component sensor kinase [Agrobacterium vitis S4]
 gi|221735796|gb|ACM36759.1| two component sensor kinase [Agrobacterium vitis S4]
          Length = 872

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 98/664 (14%), Positives = 205/664 (30%), Gaps = 50/664 (7%)

Query: 175 FSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL 234
            S   GF  V      +           + + + + +            +   +      
Sbjct: 69  VSAIIGFIEVMPQTPSDGLGRAFLDSQSEGTLVTDPRGHIIYANAAYGRMTGVRRATDVQ 128

Query: 235 RMK-----NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYF 289
            ++     ++ +    Y          +        +   P  ++    +  +   ++  
Sbjct: 129 TLEALLSRHREAGEALYRLINGLREDRDGQEEFRLLKPLGPFSDNGSGAHWYRLRARRLV 188

Query: 290 GTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSF 348
               +   + ++             F +      + +D  P  FF     G +FY N + 
Sbjct: 189 EKGPHKGLQIWQIADITADRDDQERFFKELQNAIDYLDHAPAGFFSAGRKGEIFYLNATL 248

Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
                               +     ++         +         A+  L  ++    
Sbjct: 249 SEWLGID-----LTQFSPGAIYLKDLVAGEGMALIQSVQAEPGLSKTATLDL-DLRRADG 302

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468
            S     +   ++ +         I     +     R      M+       T   IA +
Sbjct: 303 RSFPARLVHRVRSARDGAPGESRTIVLARQEVIAGDRSDSSASMRFTRFFNNTPMAIASV 362

Query: 469 NREGIILSTNRAVSKLFG--YPVEDILRK-PFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
           + +G IL TN    K F      +DI RK      L  N   V    L++          
Sbjct: 363 DGQGRILRTNAPFLKFFSDVVSRDDIDRKIRLDAVLHDNERPVFAEALSQAR-DRQVDIA 421

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKE 581
              +     + +     +                +   D+++ K  + +++  +K+    
Sbjct: 422 PIDSRHPLDDMRHFRFYVNAVIDQSDEAPEEAAIVYAVDVTDQKALETQMAQTQKM---- 477

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
            +        ++H+    LTAI+  S+ +  Q      +  + +    I R+ N    +V
Sbjct: 478 -NAVGTLAGGIAHDFNNVLTAILLSSDHLLLQARP--SDSSFADLME-IKRNANRAAVLV 533

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701
             LL  S+    K  +    ++L + + +   LV    +   + +   +  ++  + ADL
Sbjct: 534 RQLLAFSR----KQTMRPTVLNLTDVIGDLRMLVDRLISGTNVKLHVDYGRDLWPVKADL 589

Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTT--------------HTSNEEVILRVRDTGVG 747
              +Q+ +N+  NA    P GG I IST                   + V++ V D G G
Sbjct: 590 SQFEQVLINLCVNARDAMPQGGNITISTRNVTGVEAAAYNHRGLPHEDFVLIEVADRGTG 649

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           +    L+K  +PF    +     G+GTGLGL +   +V  + G  Y+ S   +GT   I 
Sbjct: 650 IAPEILDKIFEPFFTTKD----VGKGTGLGLAMVYGIVKQSGGYIYLESEVGEGTTFRIF 705

Query: 808 FPLY 811
            P +
Sbjct: 706 LPRH 709



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 38/389 (9%), Positives = 98/389 (25%), Gaps = 30/389 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAF------KMIGMRLCDVSDILHIDPNNHIGDLLKRQNT 142
            D  G++   +    +  G          + +  R  +  + L       I  L + ++ 
Sbjct: 102 TDPRGHIIYANAAYGRMTGVRRATDVQTLEALLSRHREAGEAL----YRLINGLREDRDG 157

Query: 143 WYGKTTLWPI----EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
                 L P+    +  +      L A  +        G + + I  +    +D     K
Sbjct: 158 QEEFRLLKPLGPFSDNGSGAHWYRLRARRLV-EKGPHKGLQIWQIADITADRDDQERFFK 216

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK----NKVSSLTEYYAHKDDVL 254
            L     +L     G  S  ++    +   +    L +     +  +   +     + + 
Sbjct: 217 ELQNAIDYLDHAPAGFFSAGRKGEIFYLNATLSEWLGIDLTQFSPGAIYLKDLVAGEGMA 276

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE----YLSHRNHPS 310
             +          +     D    +   +  +              E     L+ +   +
Sbjct: 277 LIQSVQAEPGLSKTATLDLDLRRADGRSFPARLVHRVRSARDGAPGESRTIVLARQEVIA 336

Query: 311 LSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLT-KYKSVDDIEIAGGLST 368
                           +  P+    V   G +   N  FL       S DDI+    L  
Sbjct: 337 GDRSDSSASMRFTRFFNNTPMAIASVDGQGRILRTNAPFLKFFSDVVSRDDIDRKIRLDA 396

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
           +L      +   +    L ++    +  +        +               +      
Sbjct: 397 VLHD----NERPVFAEALSQARDRQVDIAPIDSRHPLDDMRHFRFYVNAVIDQSDEAPEE 452

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
                  +  D +  + +M  +  ++ ++
Sbjct: 453 AAIVYAVDVTDQKALETQM-AQTQKMNAV 480


>gi|254512907|ref|ZP_05124973.1| sensory box sensor histidine kinase/response regulator
           [Rhodobacteraceae bacterium KLH11]
 gi|221532906|gb|EEE35901.1| sensory box sensor histidine kinase/response regulator
           [Rhodobacteraceae bacterium KLH11]
          Length = 478

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 70/271 (25%), Positives = 132/271 (48%), Gaps = 5/271 (1%)

Query: 538 LLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
            +S+  +   +  +  Y            +   L    + +      KS+F++ +SHE+R
Sbjct: 207 FISIFALYFIVESARGYLSVYR---AQLAQMELLRKEHEKSRAAYKAKSEFVSTMSHELR 263

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TPLT+I G  ++ ++ + G   +           R+ + +L +++ +LD    ESG+M  
Sbjct: 264 TPLTSIKGSVDLAQSGKLGK-TSKNVSAALKMAQRNCDRLLKLIDQILDFQSAESGQMTF 322

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
             +   L E +++  S V+  A+EK I +R+ F +    I  D + ++Q+  NIL+NAI+
Sbjct: 323 ERQRFDLVELITDTFSSVRPSASEKGISLRSEFPDREVEITGDKQRLQQVIDNILTNAIN 382

Query: 718 FTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
           F+P    I++    T N +V +  RDTG+G++  +  +   PF Q+ +S      GTGLG
Sbjct: 383 FSPKDSDIVVFLQ-TDNGKVRILFRDTGIGLSESDEARVFDPFTQLDSSDSRSIGGTGLG 441

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           L +++ +V+A+ G          GT   +  
Sbjct: 442 LSVSRQIVEAHGGTITYHKNSDTGTTFVVEL 472


>gi|186682689|ref|YP_001865885.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186465141|gb|ACC80942.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 1211

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 69/259 (26%), Positives = 130/259 (50%), Gaps = 7/259 (2%)

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
                 E ++ +  L    +     S +KS+FLA +SHE+RTPL +++  + ++ +    
Sbjct: 500 VARKNQEVERARKSLEEKAEQLALSSKYKSEFLANMSHELRTPLNSLLILARLLADNSLN 559

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
            L + + +EY+  I  +G  +L+++ND+LD++KIESG M+L  E ++  +  +      +
Sbjct: 560 NLTD-KQVEYSRTIYSAGTDLLELINDILDLAKIESGTMSLDIEQIAFADLETSLEQTFR 618

Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG---QIIIS--TT 730
             A+ K +       + +P  I  D + ++Q+  N+L+NA  FT  GG   +I +S    
Sbjct: 619 QVAHNKELSFTIELDSKLPPTIYNDSKRLQQVLKNLLANAFKFTERGGVKLEITMSSDAA 678

Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
              N  V   V DTG+G+   + +   + F Q   +   +  GTGLGL +++ +     G
Sbjct: 679 QIDNPMVAFAVSDTGIGIPAEKQKVIFEAFQQADGTTSRKYGGTGLGLSISRELAQLLGG 738

Query: 791 KFYIFSTPAKGTLIEIIFP 809
           +  + S P +G+   +  P
Sbjct: 739 RIELVSKPGQGSTFTLYLP 757


>gi|323170365|gb|EFZ56018.1| sensor protein evgS domain protein [Escherichia coli LT-68]
          Length = 790

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 88/419 (21%), Positives = 162/419 (38%), Gaps = 12/419 (2%)

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
            W+  +                  +    +       ++ +  +E ++    ++ ++  +
Sbjct: 121 TWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISFRKALSDSLPN 180

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--NTPSVMNHYLTEILSLDL 521
              ++N +G ++S N A    F          P         +  S  +    E      
Sbjct: 181 PTYVVNWQGNVISHNSAFEHYFTADYYKNAMLPLENSDSPFKDVFSNAHEVTAETKENRT 240

Query: 522 RQTLEKIT-LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
             T       G  K        +        + Y     DI+E +   + L   +  A  
Sbjct: 241 IYTQVFEIDNGIEKRCINHWHTLCNLPASDHAVYICGWQDITETRDLIHALEVERNKAIN 300

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            +  KS FLA +SHEIRTP+++I+GF E++       L   + +E  +    +G  +L +
Sbjct: 301 ATVAKSQFLATMSHEIRTPISSIMGFLELLS---GSGLSKEQRVEAISLAYATGQSLLGL 357

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILA 699
           + ++LD+ KIESG   L  + V +   V          A  K I +  S        +  
Sbjct: 358 IGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPEHYLVKI 417

Query: 700 DLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMTNYELEKA 756
           D ++ KQ+  N+LSNA+ FT  G  +I  S  H  +   ++   + D+G G++  E ++ 
Sbjct: 418 DPQAFKQVLSNLLSNALKFTTEGAVKITTSLVHIDDNHAVIKMTIMDSGSGLSQEEQQQL 477

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            K + Q   S   +  G+GLGL + K ++    G   + S P  GT   I  P+  +  
Sbjct: 478 FKRYSQT--SAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVEISQQ 534


>gi|293395635|ref|ZP_06639918.1| sensor histidine kinase [Serratia odorifera DSM 4582]
 gi|291421954|gb|EFE95200.1| sensor histidine kinase [Serratia odorifera DSM 4582]
          Length = 904

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 115/686 (16%), Positives = 230/686 (33%), Gaps = 62/686 (9%)

Query: 136 LLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA 195
           LL+ +  +         +G    +   L+               G         + D  A
Sbjct: 27  LLRDRLPYSDLDAQRQPQGAASDLLSALSTQ------------SGLHFSAQAASNRDQLA 74

Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255
                 +    L   +               QQ     +R  +           +   L 
Sbjct: 75  QMLSQQRILLALPPPQSSPPPTGILLSKPLWQQRWALVVRRDSLPLQHQLMPDLRHQRLL 134

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
           + ++     + + L              T  +    L      +          + +A  
Sbjct: 135 SLRH--SPVQAALLTTYP--GVALGEAATLHEALRLLN-----AGAAQGIVCDATQAALL 185

Query: 316 DEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
                     V   P                 +L   ++  +D I  A  +  L   P  
Sbjct: 186 ASNLYPGRLLVRPLPAIVSTQRL---------WLAADQHALLDRINQA--IDAL---PDG 231

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
              +  +  +L  +    + A +                  P    +          +  
Sbjct: 232 MAQSINQRWLLNAALNGMLPAPSTARH-----------WLTPLAGISAALSLFLIGFLLS 280

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
           E    R  +R +   +    ++L +    + + +  G I   N+A+        + ++  
Sbjct: 281 EIFRRRRAERGLRDALKYWQTLLNSIPTPLLVCDPLGKITHCNQALLTSLALSHQQVIGS 340

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLD--LRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-S 552
               F   +  +    +   I ++     Q  ++  +   ++ ++            +  
Sbjct: 341 TLEHFTAHHPIAPPIGHQERIAAIGSMQPQFSDRTMVIRGEQREIAQWLAAYSDSRMTPQ 400

Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
              L  +DIS+ K+ +  L+ A + A   S  KSDFLAR+SHEIR+P+ AI+G  E +++
Sbjct: 401 GLLLGWYDISQRKRLERDLADALQQATDASREKSDFLARMSHEIRSPMNAILGILE-LES 459

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
           QR     +            +   +L IV D+LDISKIE+G+++L  +P +L   +++ +
Sbjct: 460 QRPDAADSS-----LPIAYAASRQLLQIVGDVLDISKIEAGELHLQPQPTALYPLLTQLL 514

Query: 673 SLVQLYANEKRILIRTSFANN-IPRILADLRSVKQIALNILSNAIHFTPSGG---QIIIS 728
                 A +K + + +          L D   + Q+  N+LSNAI +T  G    Q+ + 
Sbjct: 515 ETYATLAAQKALRLDSDIEAAWQCDYLLDGTKLTQVLNNLLSNAIKYTERGFVALQVSVQ 574

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
           +  T  + V   + D+G+G+     +K ++P+ Q   +       TGLGL +   +V   
Sbjct: 575 SQDTQYDRVTFSITDSGIGIAPQMQQKILQPYVQADPNTPAS---TGLGLAICTQLVQLL 631

Query: 789 MGKFYIFSTPAKGTLIEIIFPLYDTS 814
            G+  I S P  G+       L  ++
Sbjct: 632 GGELQIDSAPQHGSRFSFTLSLPRST 657


>gi|134076372|emb|CAK39626.1| unnamed protein product [Aspergillus niger]
          Length = 1306

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 76/255 (29%), Positives = 129/255 (50%), Gaps = 12/255 (4%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           +S  +    + + A++ AE  +  KS+FLA +SHEIRTP+  IIG +++  +        
Sbjct: 693 VSNLRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDD---LK 749

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
           P   E  N +    N +L I++D+LDISKIE+ +M +   P ++   V  A+  + + AN
Sbjct: 750 PYTREMLNVVHNLANSLLTIIDDILDISKIEANRMVIESIPFTVRGTVFNALKTLAVKAN 809

Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV-- 737
           EK + +     N +P  ++ D   ++QI LN++ NAI FT  G ++ ++   +  E+   
Sbjct: 810 EKFLSLTYQVDNTVPDYVIGDPFRLRQIILNLVGNAIKFTEHG-EVKLTICKSDREQCAA 868

Query: 738 -----ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
                   V DTG+G+   +L+     F Q   S   R  GTGLGL ++K +V+   G  
Sbjct: 869 DEYAFEFSVSDTGIGIEEDKLDLIFDTFQQADGSTTRRFGGTGLGLSISKRLVNLMGGDV 928

Query: 793 YIFSTPAKGTLIEII 807
           ++ S    G+     
Sbjct: 929 WVTSEYGHGSTFHFT 943


>gi|1346440|sp|P48027|GACS_PSESY RecName: Full=Sensor protein gacS
 gi|151329|gb|AAA25877.1| regulatory protein [Pseudomonas syringae]
          Length = 907

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 76/243 (31%), Positives = 140/243 (57%), Gaps = 8/243 (3%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  A+K A + S  KS+FLA +SHEIRTPL  I+GF+ +++     P    R  +Y   
Sbjct: 260 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSELTP----RQFDYLGT 315

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I++S + +L I+N++LD SKIE+GK+ L   P +L + + + ++++   A+ K++ + + 
Sbjct: 316 IEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSL 375

Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQI---IISTTHTSNEEVILRVRDTG 745
              + P  +  D   ++QI  N++SNAI FT  G  +   ++      + ++ + V+DTG
Sbjct: 376 VYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAMLEDETEEHAQLRISVQDTG 435

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+++ ++    + F Q  NS   +  GTGLGL ++K +++   G+  + STP +G+   
Sbjct: 436 IGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFW 495

Query: 806 IIF 808
           I  
Sbjct: 496 ISL 498


>gi|148549273|ref|YP_001269375.1| multi-sensor hybrid histidine kinase [Pseudomonas putida F1]
 gi|148513331|gb|ABQ80191.1| multi-sensor hybrid histidine kinase [Pseudomonas putida F1]
          Length = 917

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 79/244 (32%), Positives = 140/244 (57%), Gaps = 10/244 (4%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  A+K A + S  KS+FLA +SHEIRTPL  I+GF+ +++     P    R ++Y N 
Sbjct: 271 ELDMARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSEMTP----RQLDYLNT 326

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I++S + +L I+N++LD SKIE+GK+ L   P +L + + + ++++   A+ K++ + + 
Sbjct: 327 IEKSADNLLGIINEILDFSKIEAGKLVLDSIPFNLRDLIQDTLTILAPAAHAKQLELLSL 386

Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDT 744
              + P  ++ D   +KQI  N++SNAI FT  G  I++        E    + + V+DT
Sbjct: 387 IYRDTPASLVGDPLRLKQILTNLVSNAIKFTREG-TIVVRAMLEDEHEDCAQLRISVQDT 445

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G++  ++    + F Q  NS   +  GTGLGL ++K +++    +  + STP +G+  
Sbjct: 446 GIGLSPQDVRTLFQAFSQADNSLARQPGGTGLGLVISKRLIEQMGDEIGVDSTPGEGSQF 505

Query: 805 EIIF 808
            I  
Sbjct: 506 WISL 509


>gi|298387781|ref|ZP_06997331.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
 gi|298259386|gb|EFI02260.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
          Length = 419

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 91/382 (23%), Positives = 162/382 (42%), Gaps = 32/382 (8%)

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
           E  +L SIL+  +    +I+R+ I+ +TN     L          K     L        
Sbjct: 38  ESKELTSILQNINVYYLLIDRDFIVHNTN--YYTLNHLTPVQGEIKRVGDLLHCRNAIAA 95

Query: 510 NH---------------YLTEILSLDLRQTLEKITLGSTKEEKLL-----SLRIIIKKLP 549
                                       + L+      +++EK +     S+  +  K+ 
Sbjct: 96  GECGKHEQCKLCCIRTFISKAFYEKRSFKKLDASMQLLSEDEKTVIPCDVSVSGVYLKIN 155

Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                 LT++D++E +  +  L   ++ A      KS F+A +SHE+RTPL AI+GFS +
Sbjct: 156 GEERMVLTVYDVTELRNMQRLLDVERENAISADKLKSAFIANMSHEVRTPLNAIVGFSGL 215

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           +               Y + I  +   +L +VND+ D+S+I++G +N  +     ++ + 
Sbjct: 216 MA----TATSEEEKKMYTDIISENNERLLRLVNDIFDLSQIDAGVLNFVYSEFDANDLLR 271

Query: 670 EAISLVQLYANEKRIL-IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
           E   L  +  NE  ++ +          + ++ + + Q+  N+L NA+ FT +G +I   
Sbjct: 272 ELEGLFGMRLNENPLVALVCEAHLEPIMMHSEKQRIIQVLTNLLHNAMKFTKTG-EIRFG 330

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                 +EV   V DTG+G+   E EK    F ++        +GTGLGL L++ +V   
Sbjct: 331 CRMEGTDEVYFYVSDTGIGIPKEEQEKIFSRFTKLD----REMQGTGLGLTLSQTIVHNF 386

Query: 789 MGKFYIFSTPAKGTLIEIIFPL 810
            G+F + S   KG+    I PL
Sbjct: 387 GGRFGVESEVGKGSTFWFILPL 408


>gi|296536415|ref|ZP_06898515.1| sensor histidine kinase/response regulator [Roseomonas cervicalis
           ATCC 49957]
 gi|296263265|gb|EFH09790.1| sensor histidine kinase/response regulator [Roseomonas cervicalis
           ATCC 49957]
          Length = 1111

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 77/265 (29%), Positives = 138/265 (52%), Gaps = 6/265 (2%)

Query: 545 IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
           + +       SL M +I   ++    L  AK+ AE  +  KS ++  +SHE+R+PL AI+
Sbjct: 626 VAQEEPRRQTSLLMSEIRAHQRTDAALQKAKEAAEAANMAKSRYVIGISHELRSPLNAIL 685

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           G++++++     P    R  +    I RSG  +  ++  LLDISKIE+G++ L+ + +  
Sbjct: 686 GYAQLLERDTAIP---ERRRDGLRTIRRSGEHLAALIEGLLDISKIEAGRIELYRDEIRF 742

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG 723
            E + + + +++L A  K I         +P ++  D R ++QI +N+LSNAI FT +GG
Sbjct: 743 PEFLDQIVQMLRLQAEAKSIAFTFDPPERMPEVVHTDERRLRQILINLLSNAIKFTRAGG 802

Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
            + +      +E   + V DTG+G+   +L +  +PF +  NS      G GLGL + K 
Sbjct: 803 -VTLRLRFR-SEVAEIEVIDTGIGIAEDDLARIFEPFQRGANSHAPSTPGVGLGLTITKT 860

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIF 808
           +V+   G   ++S   +G+   +  
Sbjct: 861 LVEVMGGDIAVWSRLGEGSRFRVRL 885


>gi|288962347|ref|YP_003452642.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
 gi|288914613|dbj|BAI76098.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
          Length = 933

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 105/634 (16%), Positives = 215/634 (33%), Gaps = 35/634 (5%)

Query: 197 GKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256
             RL    +    +     +VE     + +         +   ++   + +A +   +  
Sbjct: 3   LTRLAPWKTLRGRMLAAAMAVE---AIMLTLMVANSVRLLYGSLAEQAKLHAEQVAPVLN 59

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
                  ++      Q        N           +        +   R  P       
Sbjct: 60  AALVAPLAQRDYATLQAVLDESRTNGGVVYLAVSDSKGKLVAISGWPQGRALPDPDPSLT 119

Query: 317 EGENLTPETVD-KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
                     D   P+       G + +      ++   + +    IA  LS +L +  L
Sbjct: 120 LDAKDGEARYDVAVPVSLAGQKLGAVQFGLDLLHIVQARRDLLTQGIAIALSEILLSAGL 179

Query: 376 SDNNAIKPVMLYRSDRT--CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
                +       +        A+           N                     + +
Sbjct: 180 LTLLGLWLTRHLAALARASERVAAGDYSPPDLAEGNDDIGRLGAAFNTMSHAIKERVDQL 239

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
                +     R ME E  +L ++L A   G+  +  +G I   N A S LF      I 
Sbjct: 240 TVALDEQEALARDMEQERARLSALLSAMDFGVLFVGGDGRIAYANPAFSTLF-----SIA 294

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS- 552
             P    L++   +  N  L    +L      ++    +  + +++    +  +    + 
Sbjct: 295 GAPVGHRLDETLANAGNAPLDTDHALLSAVDADERREMTLTDGRIVGWHNVPVRNAAGAA 354

Query: 553 -CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
                   D++E ++   +L  AK+ AE  S  K++FLA VSHE+RTP+  ++G   ++ 
Sbjct: 355 IGKLWLCIDVTEPRRAAEQLFQAKEKAEAASRSKTEFLATVSHELRTPMNGVLGNLTLLA 414

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
           +              A+   RS   +L +++D+LD+SK+E+ +++L     +L + +   
Sbjct: 415 DASLPA----EEKRLADVARRSAETLLRLLDDILDLSKLEARRIDLEEADCALPQLIDGV 470

Query: 672 ISLVQLYANEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
           + L++  A +K + +      ++P ++  D   ++QI  N++ NA+ FT  G  I +   
Sbjct: 471 LELLRPSATDKGLDLSARLTPSVPEVIVTDPARLRQILFNLVGNAVKFTEDG-HIAVRVR 529

Query: 731 HTSNE----------------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
                                 +   V DTG+G+    +      F Q  +S   R  GT
Sbjct: 530 RLEPGPDIGADIGVDGHPDSVLLEFEVEDTGIGIAPDSVPTLFDRFTQADSSITRRYGGT 589

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           GLGL + + +     G   + + P +G++     
Sbjct: 590 GLGLAICRDLCLLMGGGITVETAPGRGSVFRFTI 623



 Score = 46.2 bits (108), Expect = 0.026,   Method: Composition-based stats.
 Identities = 27/255 (10%), Positives = 64/255 (25%), Gaps = 22/255 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +   G +   +        + A   +G RL +        P +    LL   +    +  
Sbjct: 274 VGGDGRIAYANPAFSTLF-SIAGAPVGHRLDETLANAGNAPLDTDHALLSAVDADERREM 332

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +G  +        +P+ +      G     I        D     +  ++ F    
Sbjct: 333 TL-TDGRIVGW----HNVPVRNAAGAAIGKLWLCI--------DVTEPRRAAEQLFQAKE 379

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           + +    S  +    +  +   P +  + N           ++  L         +    
Sbjct: 380 KAEAASRSKTEFLATVSHELRTPMNGVLGNLTLLADASLPAEEKRLADVARRSAETLLRL 439

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
           L +  D   +   +         L+       + +         +  D+G +L+      
Sbjct: 440 LDDILDLSKLEARRI-------DLEEADCALPQLIDGVLELLRPSATDKGLDLSARLTPS 492

Query: 329 CPIPFFVYSHGNLFY 343
            P    V     L  
Sbjct: 493 VPE-VIVTDPARLRQ 506


>gi|187932591|ref|YP_001885215.1| sensory transduction histidine kinase [Clostridium botulinum B str.
           Eklund 17B]
 gi|187720744|gb|ACD21965.1| sensory transduction histidine kinase [Clostridium botulinum B str.
           Eklund 17B]
          Length = 722

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 79/366 (21%), Positives = 155/366 (42%), Gaps = 5/366 (1%)

Query: 451 VMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
             +L   L+  +D  A+++ +G  L  +   +   G+  +++L K F   +  +     N
Sbjct: 327 EKELELFLDTATDSCALVDFDGTFLKISNNFTNTLGWNEDELLDKKFQDLIYPDDIEKSN 386

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNK 570
           ++   +      +    I     K  +  +L      +   +   LT  DI+  +++  +
Sbjct: 387 NFRKNVRDSGKFKGSGLIHRYLCKNGQYKTLEWNWNLIQDENHIILTGKDIT-EEKKLKE 445

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI---KNQRFGPLGNPRYIEYA 627
                +      + K+ F A VSHE RTPL  I+   ++I    +         +  +Y 
Sbjct: 446 EKKHLEETVALETLKTTFFANVSHEFRTPLNIILTAIQLISIKLSNCPCSEEKEKIFQYI 505

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
             I ++   +L +VN+LLD++KI+ G   L     ++   + E +  V  +   K+  I 
Sbjct: 506 RGIKQNSYRLLKLVNNLLDLTKIDGGYYELKSIKCNIVNLIEEIVLSVADHIGSKKREII 565

Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS-NEEVILRVRDTGV 746
                       D   ++ I LN+LSNA+ FT     I ++    S  + V++ V+D+G 
Sbjct: 566 FDTTEEEILTSCDPEKIETILLNLLSNAVKFTKENDSIEVNLNVDSYYKNVVVSVKDSGC 625

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
            +   + +     F Q+      R EG+G+GL L K++VD + G  ++ +    G  I  
Sbjct: 626 KIDKEDAKIIFNRFTQLDALLNRRCEGSGIGLALVKSLVDLHGGDIWVNTLFEDGAEIIF 685

Query: 807 IFPLYD 812
             P+ +
Sbjct: 686 TIPIKE 691



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 60/191 (31%), Gaps = 20/191 (10%)

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
             L +IL++  + I   ++ G     N+  S+      ++I+ K    F       + + 
Sbjct: 15  EDLENILDSIPNCIWTKDKNGEYTYVNKTFSENMNLSKDEIIGKTDFDFGNTKLAKIFDK 74

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCYSLTMHDISEWKQEKN 569
              ++LS ++    E       K+ +   +     K   +          + +  K    
Sbjct: 75  DDKKVLSRNIPTLSENKIKIQGKK-RWFEIYKTPLKRKDNSFPWIMAIARETTFDKTLDE 133

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
            L +              F A  S+E+      II  +   K+       + +Y+     
Sbjct: 134 DLQNL-------------FNANKSYELNND---IILPAINTKDIIDNKNTSNKYLYKLQK 177

Query: 630 IDRS-GNLVLD 639
           I  S  + +  
Sbjct: 178 IIDSLSSRLKT 188



 Score = 39.6 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 10/57 (17%), Positives = 24/57 (42%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
           +D  G   +IS     T+G    +++  +  D+     I+ +N+    ++    + G
Sbjct: 344 VDFDGTFLKISNNFTNTLGWNEDELLDKKFQDLIYPDDIEKSNNFRKNVRDSGKFKG 400



 Score = 38.5 bits (88), Expect = 5.4,   Method: Composition-based stats.
 Identities = 16/121 (13%), Positives = 39/121 (32%), Gaps = 7/121 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            W  D +G    +++   + +     ++IG    D  +       +     +  +N    
Sbjct: 28  IWTKDKNGEYTYVNKTFSENMNLSKDEIIGKTDFDFGNTKLAKIFDKDDKKVLSRNIPTL 87

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
                 I+G       ++   P+  ++  F       I+ + R     + L + L   F+
Sbjct: 88  SENKIKIQG--KKRWFEIYKTPLKRKDNSFP-----WIMAIARETTFDKTLDEDLQNLFN 140

Query: 206 H 206
            
Sbjct: 141 A 141


>gi|90423567|ref|YP_531937.1| periplasmic sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris BisB18]
 gi|90105581|gb|ABD87618.1| periplasmic sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris BisB18]
          Length = 533

 Score =  276 bits (705), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 103/249 (41%), Positives = 154/249 (61%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I E +Q K     A+  AE  +  KS FLA++SHE+RTPL AI+GFSEV+K++ FG    
Sbjct: 240 IGELEQAKAISDEARHRAEAANVAKSRFLAQMSHELRTPLNAILGFSEVMKSEIFGAHAV 299

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
             Y +Y+  I  SG  +L+++N++LD+S+IE+G+  L+ E VSL   V++   L++L A+
Sbjct: 300 AVYKDYSADIHNSGVHLLNLINEILDLSRIEAGRYELNEEAVSLVHVVADCHHLLKLRAS 359

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
            + I I   F   +PRI  D R+ +QI LN+LSNAI FTP GG+I +    T++    L 
Sbjct: 360 SRGITIHEVFEQGMPRIWGDERAARQIVLNLLSNAIKFTPQGGEIWLKVGWTASGGQYLS 419

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V+DTG G+   E+   +  FGQ  NS +   +G GLGLP+AK+++D + G F + S    
Sbjct: 420 VKDTGSGIAEDEIPIVLASFGQGSNSIKSAEQGAGLGLPIAKSLIDMHGGTFTLKSKLRI 479

Query: 801 GTLIEIIFP 809
           GT + + FP
Sbjct: 480 GTEVIVTFP 488


>gi|254679644|gb|ACT78509.1| GacS [Pseudomonas sp. DF41]
          Length = 916

 Score =  276 bits (705), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 79/243 (32%), Positives = 143/243 (58%), Gaps = 8/243 (3%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  A+K A + S  KS+FLA +SHEIRTPL  I+GF+ +++     P    R ++Y   
Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSELTP----RQLDYLGT 325

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I++S + +L I+N++LD SKIE+GK+ L   P +L + + + ++++   A+ K++ + + 
Sbjct: 326 IEKSADSLLGIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSL 385

Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQI---IISTTHTSNEEVILRVRDTG 745
              + P  ++ D   +KQI  N++SNAI FT  G  +   ++   H  + ++ + ++DTG
Sbjct: 386 VYRDTPLSLVGDPLRLKQILTNLVSNAIKFTREGTIVARAMLEDEHEDSVQLRISIQDTG 445

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G++N ++    + F Q  NS   +  GTGLGL ++K +V+   G+  + STP +G+   
Sbjct: 446 IGLSNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLVEQMGGEIGVDSTPGEGSEFW 505

Query: 806 IIF 808
           I  
Sbjct: 506 ISL 508


>gi|254506101|ref|ZP_05118245.1| signal transduction histidine kinase [Vibrio parahaemolyticus 16]
 gi|219550919|gb|EED27900.1| signal transduction histidine kinase [Vibrio parahaemolyticus 16]
          Length = 771

 Score =  276 bits (705), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 84/365 (23%), Positives = 153/365 (41%), Gaps = 25/365 (6%)

Query: 464 GIAIINREG-IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP---SVMNHYLTEILSL 519
           G+ + +  G +I   N  +               ++V +          +   +  +   
Sbjct: 177 GVILKDSYGDVITEHNFQLVDDIYISQHTFGDFNWSVDVVNAKRLVAEQVYDVVRNVELG 236

Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS-----EWKQEKNK---- 570
            +   L  + LG     + L   I++            + DI+     E +   +K    
Sbjct: 237 IVPIMLACVMLGYLLINRFLIAPIVLIAKKVDDSKRGGIIDITYDSNDEIRHLIDKFNQK 296

Query: 571 ---LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
              L   K  A+  +  KS FLA +SHEIRTP+  ++G ++++              ++ 
Sbjct: 297 TVFLEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILLKTDL----TEEQRKHL 352

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
             +  SG+ ++ ++N++LD SKIE G + L  +P  L+  +    S+     +EK +  +
Sbjct: 353 KTLYESGDHMMTLLNEILDFSKIEQGHLELEHQPFPLESIIGSINSVYFTLCSEKGLQFK 412

Query: 688 TSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII-STTHTSNE--EVILRVRD 743
                       +D   ++QI  N+L+NA+ FT  G  + +  T   +N    + +RVRD
Sbjct: 413 VISEVPQGRWYRSDKARLRQILFNLLTNAVKFTSRG-YVEVYFTEKRANGVDYLHIRVRD 471

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TG+G+     EK  KPF Q  +S   R  GTGLGL + K + +   G  ++ S    G+ 
Sbjct: 472 TGIGIAKESQEKIFKPFEQAESSTTRRFGGTGLGLAIVKQLCELMDGDIHLTSEVGIGSC 531

Query: 804 IEIIF 808
            E+  
Sbjct: 532 FEVQL 536


>gi|326387830|ref|ZP_08209436.1| PAS/PAC sensor signal transduction histidine kinase
           [Novosphingobium nitrogenifigens DSM 19370]
 gi|326207876|gb|EGD58687.1| PAS/PAC sensor signal transduction histidine kinase
           [Novosphingobium nitrogenifigens DSM 19370]
          Length = 785

 Score =  276 bits (705), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 99/634 (15%), Positives = 211/634 (33%), Gaps = 21/634 (3%)

Query: 184 VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL 243
           +   R +                   +       +     + +        R    V   
Sbjct: 165 LRHLRAETAGARADFAGLSGLIEAAPLPMWFRGPDLALRLVNTAYVRAVGARTGEDVVLD 224

Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303
                   D         L        E+    TI   + + +     L ++    +  +
Sbjct: 225 GVELVETVDGATPRDIARLAQARHMPIERVVSATIGGQRRSLRVIDLPLGDDGVAGYA-V 283

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEI 362
                  L+  F        + +D        +     L + N  FL L        ++ 
Sbjct: 284 DIEEMEELTRQFRRFRAAQRQMLDTMSAGIAQFDERRNLVFVNQPFLRLFNIPQAWVVDT 343

Query: 363 AGGLSTL--LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
                 L  +            P          ++  AR      +    L +   P   
Sbjct: 344 PPFDRVLDRMRDAGRLPEVRDFPEWRRERQGWFLSREAREEPWLLSDGTHLRVVAQPMPD 403

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
                       +  +  +        +  +    +  +   + +A    +  +   NR 
Sbjct: 404 G-------GLLMMFEDRTEQLQLSATRDTLLRSRTATFDNLFESLAAFGPDSRVQLWNRR 456

Query: 481 VSKLFGYPVEDILRKP-----FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
               +G   E +   P           +         + +++     +  ++       +
Sbjct: 457 FVADWGLDEEFLDSHPRADALLARMAVKLRRPGQVATIGQVIEAATLERRQQSGRLELAD 516

Query: 536 EKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
            +   L      LP  +     + DI++ ++ +  L        +  + K+ F+A +S+E
Sbjct: 517 GRY--LAFAGVPLPDGNGLLTIL-DITDSQKAETMLRERNAALLEADAVKTRFIANMSYE 573

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
            RTPLT+I GF+E++++   G L   R  EY   I  S   + + +  +LD+S+ E+G +
Sbjct: 574 FRTPLTSIGGFAEMLQSGLAGDLP-ERAKEYVGAILTSVKRLGEQIETVLDLSQGEAGTL 632

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715
            +  E V++   +SE +        E  + +       +  +  D R +++   +++ NA
Sbjct: 633 PIAREAVAIFPLLSEVVHERDEALTEGGLTLDLRGTEAVGTVTGDPRRLRRAFGHLVDNA 692

Query: 716 IHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           I  T  GG+I++  T   + +V + V D G GM   +L +A++      + + I    +G
Sbjct: 693 IAATGQGGRILVECTRRPDRKVQVVVSDNGRGMEPAQLARALEGLAISSDGRSIERR-SG 751

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           LGLPL + +++A+ G   I S P +GT   ++ P
Sbjct: 752 LGLPLVRQLIEAHGGSIEIMSEPGQGTSAVVVLP 785


>gi|221210646|ref|ZP_03583626.1| periplasmic sensor hybrid histidine kinase [Burkholderia
           multivorans CGD1]
 gi|221169602|gb|EEE02069.1| periplasmic sensor hybrid histidine kinase [Burkholderia
           multivorans CGD1]
          Length = 1017

 Score =  276 bits (705), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 107/674 (15%), Positives = 222/674 (32%), Gaps = 57/674 (8%)

Query: 169 YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ 228
           Y+ +++ +      +V         R    R       L  I    S         +   
Sbjct: 95  YASDQQIAITPYPSVVFGVPGQTVDRREVARYLSLSVLLARICAASSINRGYALIGYHYS 154

Query: 229 SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288
           +      +           A  D+  +T     +   ++             +      +
Sbjct: 155 TRTAMFGLVPNSRGDGAGLATPDERARTLDALRIDFGDAP----PSAGHGRPHVRWLPPF 210

Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSF 348
              +    +      +  +    +    E        +   P      +    F+   + 
Sbjct: 211 IDPVSGERRIRIAAQAQVDGEPFAVLVTEYAPDY--LLSWVPS----NAADGTFFVTTAD 264

Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
             L         + A     L         +A +PV         +     L    W   
Sbjct: 265 NRLVTAGPGVAHDDARIARLLDLDVAREPGDADEPVFR----GGHVVFRGTLDKTGWTLA 320

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI------------NKRKMEIEVMQL-C 455
            +L+ T I    A +    +  + +    +   +             + +   +   L  
Sbjct: 321 YALSWTHIVATVALRAGLLLGASLLTIAIMWVLLVRFHHRVLTGVYARSQRVFDSESLCR 380

Query: 456 SILEATSDGIAIINR-EGIILSTNRAVSKL---FGYPVEDILRKPFTVFLEQNTPSVMNH 511
           S++E +  G+ +I+R +G  +  +  +++     G     +  +    +    + +    
Sbjct: 381 SVIEMSPIGLGLISRADGRFMLVSPVLAERVARLGCDCGTLSAQILAQYRAGASNTPFQI 440

Query: 512 YL----TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQE 567
            L     +  +      L    +                +   S    + + D++  +Q 
Sbjct: 441 ELVLSDAQAAAGADAPPLHLEVIARDA------------RYQASDVLIVAVVDVTAKRQL 488

Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
             KL  A + A+  ++ KS FLA +SHEIRTPL  I+G  E+++                
Sbjct: 489 VQKLEEAVRAADSANAAKSSFLAAMSHEIRTPLNVILGNLELLERSVLDLP----QRSRV 544

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
             +  + + +L++V+ +LD +K+E+G M +          ++  +      A  K + + 
Sbjct: 545 QTLRNAASGLLELVSGILDFTKVEAGAMPVESIEFDAIGVIARELGAYAPVAKAKGLPLF 604

Query: 688 TSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVR 742
              A +  + +  D   + Q+  N+LSNAI FT + G +         E    E+ + + 
Sbjct: 605 CEIAASASQRMRGDPTRLAQVFGNLLSNAIKFT-AHGHVTARVRAVRGECGTAELAIAIE 663

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG+G+ + +L K  + F Q+  +   R  GTGLGL L   +V A  G+  + S P  G+
Sbjct: 664 DTGIGIGSADLHKLFRAFSQVDATIARRYGGTGLGLALCDRLVTAMGGRIAVTSAPGAGS 723

Query: 803 LIEIIFPLYDTSHP 816
              +  PL     P
Sbjct: 724 CFTVRLPLGLDVEP 737


>gi|158338793|ref|YP_001519970.1| two-component sensor histidine kinase [Acaryochloris marina
            MBIC11017]
 gi|158309034|gb|ABW30651.1| two-component sensor histidine kinase [Acaryochloris marina
            MBIC11017]
          Length = 1318

 Score =  276 bits (705), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 68/263 (25%), Positives = 130/263 (49%), Gaps = 23/263 (8%)

Query: 563  EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
            + ++    L  A+K AE+    KS+FLA +SHEI+TP+   +G + ++ +          
Sbjct: 765  QERENNRLLKEARKAAEEAVQAKSEFLANMSHEIKTPMNGALGMAGLLLDTELQS----E 820

Query: 623  YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
               +   I   G+ ++ I+ND+LD SKIE+GK++L     +L   + EA+ L+ + A +K
Sbjct: 821  QRNFVETIQNCGDSLMVIINDILDFSKIEAGKLDLEECSFNLRTCIEEALDLLAVKAAQK 880

Query: 683  RILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS-------- 733
            ++ +   +  +I  ++  D   ++QI +N++ NAI FT  G ++ ++             
Sbjct: 881  QLELNYLWHADITEQVEGDPTRLRQILVNLIGNAIKFTNVG-EVTVAVGAREIQHVCALD 939

Query: 734  ---------NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
                     + EV + V DTG+G+    + +    F Q+ +S   +  GTGL L ++K +
Sbjct: 940  PQKIAEEVQHFEVEIAVNDTGIGIPPDNMSRLFDSFSQVDSSITRQYGGTGLALTISKHL 999

Query: 785  VDANMGKFYIFSTPAKGTLIEII 807
             +   G+ ++ S   KG+     
Sbjct: 1000 CELMGGRMWVRSEVGKGSSFAFT 1022


>gi|260778949|ref|ZP_05887841.1| sensor histidine kinase [Vibrio coralliilyticus ATCC BAA-450]
 gi|260605113|gb|EEX31408.1| sensor histidine kinase [Vibrio coralliilyticus ATCC BAA-450]
          Length = 786

 Score =  276 bits (705), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 87/311 (27%), Positives = 142/311 (45%), Gaps = 13/311 (4%)

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTK-----EEKLLSLRIIIKKLPFSSCYSLTMHDI 561
           +     L+ ILS +    +E+   G +       + +  +   I  L         +  I
Sbjct: 183 AQREKLLSRILSHESAMFVEQTERGLSAASAQLRDTISQVLFAIALLLVVLSGLGFVSRI 242

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           SE K+       A + AEK +  KS FLA +SHE+RTP+  ++G +++IK++        
Sbjct: 243 SELKRNNLAYQVATENAEKANEAKSIFLATMSHELRTPMNGVLGIAQIIKDESQEL---- 298

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
              + A  +  SG  ++ I+ND+LD SK+E GK+ L   P S+ E V      +   A  
Sbjct: 299 ETKKQAQILIDSGQHLMTILNDILDFSKVEQGKLELEIHPFSIGELVLSLEKTLGPQAAN 358

Query: 682 KRILIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN--EEVI 738
           K +             +  D    +QI  N++ NAI FT +G +I +     ++    V 
Sbjct: 359 KGLKFVIQNKVPANIELHGDPARTRQILFNLVGNAIKFTQTG-KIEVEFALDTSIPPNVC 417

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           + V D+G+G+   +L+    PF Q   S   +  GTGLGL + K +V+   GK  +FS P
Sbjct: 418 MSVTDSGIGIEREKLDTIFTPFEQAELSTTRKFGGTGLGLSIVKRLVEMMGGKVSVFSQP 477

Query: 799 AKGTLIEIIFP 809
             GT   +  P
Sbjct: 478 NVGTQFTLTIP 488


>gi|238785704|ref|ZP_04629679.1| Sensor kinase protein rcsC [Yersinia bercovieri ATCC 43970]
 gi|238713389|gb|EEQ05426.1| Sensor kinase protein rcsC [Yersinia bercovieri ATCC 43970]
          Length = 965

 Score =  276 bits (705), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 92/370 (24%), Positives = 159/370 (42%), Gaps = 29/370 (7%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
             ++E        I+ +   GI+I+   +G  + +N                  +   L 
Sbjct: 360 ALRLEEHEQFNRKIVASAPVGISILRISDGTNILSNELA-------------HNYINLLT 406

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
                 +   + E  +  +           T     L +  +  +          + D+S
Sbjct: 407 NEDRERITRIICEQQANFVDVM--------TSNNNNLQISFVHSRYRNEDVAICVLVDVS 458

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
              + +  L      AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R
Sbjct: 459 SRVKMEESLQEMAAAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPHGVDR 517

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                  ++ S  L+L I++D+LD SKIES ++ +     S  E ++   +       +K
Sbjct: 518 ---LVTAMNNSSGLLLKIISDILDFSKIESEQLKIEPSEFSTVEVITHISANYLPLVVKK 574

Query: 683 RILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
           R+ +       +PR++  D   ++Q+  N+L+NAI FT +G  II+       + +  RV
Sbjct: 575 RLGLYCFIEPEVPRVMMGDPVRLQQVISNLLNNAIKFTDTG-CIILQVRVR-GDYLEFRV 632

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
           RDTGVG+ + E+ +   PF Q+    Q   +GTGLGL + + +V+   G   + S    G
Sbjct: 633 RDTGVGINSREINQLFDPFFQVGTGVQRHFQGTGLGLAICEKLVNLMDGDVEVISELGMG 692

Query: 802 TLIEIIFPLY 811
           ++  I  PL+
Sbjct: 693 SIFAIRIPLF 702


>gi|227513673|ref|ZP_03943722.1| signal transduction histidine kinase [Lactobacillus buchneri ATCC
           11577]
 gi|227083096|gb|EEI18408.1| signal transduction histidine kinase [Lactobacillus buchneri ATCC
           11577]
          Length = 399

 Score =  276 bits (705), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 82/402 (20%), Positives = 167/402 (41%), Gaps = 26/402 (6%)

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII 474
             P       P     + +       +   + ++    +L +IL +   GI +I+    +
Sbjct: 17  VAPLFIRPGNPYKQIADQLTELQSRQQDESKTIKNSNTELVTILSSLPVGIMVIDSSQDV 76

Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
           +  N  ++ +       I+ +P +   +      +   +  +      Q  E  ++G   
Sbjct: 77  IFANHKMASMLQRS---IMNQPHSYSQDIRNYQ-LLSLIERVFEDHESQQTEIRSVGDHS 132

Query: 535 EEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
                   ++  +L      S+ M+DIS+    K                + DFL   SH
Sbjct: 133 --STWDTSVVYNQLENDYHISVIMYDISDIINVK--------------QMQIDFLRNASH 176

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           E++TP+TAI GF++ +             +E+   ID+    +  ++ D+L IS I++G 
Sbjct: 177 ELKTPVTAISGFAKTLLGGAMD--DRKTLVEFLKIIDQQSTQLTSLIQDVLTISHIQNGT 234

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714
            + H + + L + V   ++     A  + I +      +   +  D + + +I  N++SN
Sbjct: 235 PH-HSQALELKKFVDTKLTGYSSMAKVRDITLVDEVPQDA-VVSVDSQMLTRILQNLVSN 292

Query: 715 AIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RGEG 773
           AI +  SGG + +  +   +    L V DTG+G+   ++ +  + F +  +S+   +  G
Sbjct: 293 AIKYNRSGGSVTVKYSANDS-FWQLHVVDTGIGIAQKDISRLFERFYRADDSRTKQKVSG 351

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
           TGLGL + K +VD+  G  ++ S    G+   + FP+ D S 
Sbjct: 352 TGLGLAIVKELVDSIGGVIHVKSQRGVGSTFTVEFPINDESQ 393


>gi|332532320|ref|ZP_08408200.1| hybrid sensory kinase [Pseudoalteromonas haloplanktis ANT/505]
 gi|332038187|gb|EGI74633.1| hybrid sensory kinase [Pseudoalteromonas haloplanktis ANT/505]
          Length = 522

 Score =  276 bits (705), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 77/239 (32%), Positives = 121/239 (50%), Gaps = 10/239 (4%)

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
            HAK+ AE  +S KS+FLA +SHEIRTP++ IIG + ++  +         Y  Y + I 
Sbjct: 1   MHAKEEAEHLTSAKSEFLANMSHEIRTPMSGIIGLTNILLEKGL----PDEYEHYLDKIK 56

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
            S + +L ++ND+LD SKIESG +NL   P S++  V    +     A  K +    S  
Sbjct: 57  YSSDQLLVVINDILDFSKIESGNVNLEEFPFSVNSVVDYIKATFNELAQSKGVTFDISID 116

Query: 692 NNI-PRILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTT--HTSNEEVI--LRVRDTG 745
             +   ++ D+  + Q+ LN+ SNAI FTP G   ++I +       + V     V+D+G
Sbjct: 117 EAVKLDLIGDVVRINQVLLNLCSNAIKFTPHGTVSVLIESRKLLDDPQSVCLYFTVKDSG 176

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           +G+    L    + F Q  +S   +  GTGLGL ++K +     G   + ST   G+  
Sbjct: 177 IGIAEDNLSNLFESFTQADSSTTRKFGGTGLGLTISKRLCQLMGGDITVHSTQGVGSEF 235


>gi|330824954|ref|YP_004388257.1| PAS/PAC sensor hybrid histidine kinase [Alicycliphilus
           denitrificans K601]
 gi|329310326|gb|AEB84741.1| PAS/PAC sensor hybrid histidine kinase [Alicycliphilus
           denitrificans K601]
          Length = 722

 Score =  276 bits (705), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 104/581 (17%), Positives = 197/581 (33%), Gaps = 49/581 (8%)

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS-AYFDEG 318
                     P   +                 +        E  +       S A  +  
Sbjct: 11  RDEQPASDPSPAPAEPSERRGPGRASGAIAELIAELRASQAELEAQNKVLRYSQAAAESA 70

Query: 319 ENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDI----------EIAGGLS 367
                      P+   V      +  AN       +    D              A  + 
Sbjct: 71  SERFEALFSNVPLSLMVLDEHDVVVQANSMAQRSFQPSERDRPLTALMPFVSPRHAARVR 130

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
               A   S       V+    +   I     +  I+ + ++   +T       +Q P  
Sbjct: 131 ATFAAALESGTAEANEVVFEIDEHRHITGDLHIARIEAHTDDETPLTQFLCAVIDQGPLL 190

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY 487
             +  ++    + +    ++     +L +++ +  D I  +++   I   N   + LF  
Sbjct: 191 AERQALQRSAQELQERNAQLHASERRLEAVINSALDAIICVDQRERITVFNPTAAMLFQC 250

Query: 488 PVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
              D L  P + FL Q    +    LT   +L             T   + L++ I +  
Sbjct: 251 ATSDALGSPLSRFLPQAQQVMAFAQLTTQAALG-------EMTALTASGRELAVEISVSF 303

Query: 548 LPFSSCYSLTM--HDISEWKQEKNKLSHAKKIAEKE--SSHKSDFLARVSHEIRTPLTAI 603
              +   + T+   D++  K+E+ + S  +    +             ++H+    L AI
Sbjct: 304 ERHAEGETTTVFARDLTGRKREEARRSALEAQLRESHKMQAVGTMAGGIAHDFNNILHAI 363

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +G  E    +  G  G P   E    ID++G    D+V  +L  S+ E+         V+
Sbjct: 364 LGNVE--LAKADGTPGTP-LHESLLEIDKAGRRARDLVRQILTFSRNEA----PQRSAVA 416

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF-TPSG 722
           L E   +   L+++    + I +      ++P +LAD   V+Q  LN+ +NA+H    + 
Sbjct: 417 LAEVAHDTERLLRVTLPPE-IELSMHLPQDLPPLLADPTQVEQALLNLCTNAMHAIGSAR 475

Query: 723 GQIII-------------STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
           G+I +             S    + + V LRV+D G GM    L +  +PF         
Sbjct: 476 GRIQVDAALVQPEQRLRESLGIAAGDYVALRVQDNGPGMDEATLSRIFEPFFTTKP---- 531

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            G+GTGLGL +   ++  + G   + STP +G+   + FP+
Sbjct: 532 VGQGTGLGLAVVHGVMRTHGGGVDVHSTPGQGSRFTLYFPV 572



 Score = 39.6 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 28/280 (10%), Positives = 62/280 (22%), Gaps = 13/280 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D    +   +              +G  L                 L        G+ T
Sbjct: 231 VDQRERITVFNPTAAMLFQCATSDALGSPLSRFLPQ--AQQVMAFAQL--TTQAALGEMT 286

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                G  L V I ++        R   G                 A    L+ +    H
Sbjct: 287 ALTASGRELAVEISVSF------ERHAEGETTTVFARDLTGRKREEARRSALEAQLRESH 340

Query: 209 EIKKGHSSVEKEKYDIFSQQSP---PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
           +++   +      +D  +          L   +       + +  +      +   L  +
Sbjct: 341 KMQAVGTMAGGIAHDFNNILHAILGNVELAKADGTPGTPLHESLLEIDKAGRRARDLVRQ 400

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
             +    E      +           L   +      LS      L     +   +    
Sbjct: 401 ILTFSRNEAPQRSAVALAEVAHDTERLLRVTLPPEIELSMHLPQDLPPLLADPTQVEQAL 460

Query: 326 VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365
           ++ C                 + L+  + +  + + IA G
Sbjct: 461 LNLCTNAMHAIGSARGRIQVDAALVQPEQRLRESLGIAAG 500


>gi|158340438|ref|YP_001521794.1| two-component hybrid sensor and regulator histidine kinase
           [Acaryochloris marina MBIC11017]
 gi|158310679|gb|ABW32293.1| two-component hybrid sensor and regulator histidine kinase
           [Acaryochloris marina MBIC11017]
          Length = 914

 Score =  276 bits (705), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 76/256 (29%), Positives = 134/256 (52%), Gaps = 11/256 (4%)

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           +Q   +L  AK+ AE  +  KS F+A +SHE+RTPL  I+G+++V++     P  + +  
Sbjct: 433 QQRTAELKVAKEKAEVANQAKSLFIANMSHELRTPLNGILGYAQVLER---SPTISDKAQ 489

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           +  + I + G  +L ++ND+LD+SKIE+GK++L  +PV L   +       ++ A +K +
Sbjct: 490 QQVHIIHKCGTHLLGMINDILDLSKIEAGKLDLMPKPVHLTSCLQGVAEACRVRAAQKGL 549

Query: 685 LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG---QIII-STTHTSNEEVIL 739
               +    +P  +  D + ++Q+  N+LSNAI FT  G    Q+ +   T +    +  
Sbjct: 550 EFVYAVDPGLPEGVELDEQRLRQVLFNLLSNAIKFTQQGTVTLQVSVAEVTRSDYRRLRF 609

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V DTGVG+    L++    F Q+   +Q + EGTGLGL +++ +V     +  + S   
Sbjct: 610 GVTDTGVGIAPAHLDQLFNAFVQV-GDRQKQAEGTGLGLAISRRLVQLMGSQIEVQSAVG 668

Query: 800 KGTLIEIIF--PLYDT 813
           +G+        PL   
Sbjct: 669 QGSQFSFELEVPLATE 684


>gi|77165863|ref|YP_344388.1| Signal transduction histidine kinase, PhoR [Nitrosococcus oceani
           ATCC 19707]
 gi|254434965|ref|ZP_05048473.1| phosphate regulon sensor kinase PhoR [Nitrosococcus oceani AFC27]
 gi|76884177|gb|ABA58858.1| PAS/PAC sensor signal transduction histidine kinase [Nitrosococcus
           oceani ATCC 19707]
 gi|207091298|gb|EDZ68569.1| phosphate regulon sensor kinase PhoR [Nitrosococcus oceani AFC27]
          Length = 437

 Score =  276 bits (705), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 75/410 (18%), Positives = 154/410 (37%), Gaps = 34/410 (8%)

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM-------QLCSILEATSDGIA 466
            +   +K  + P  +    +E    +    +++             +      A  D   
Sbjct: 47  LYRWLQKPKKRPSPVEVGIMEEIVREIDFMRQRHRSRKDKISQYLKRFQKATTALPDATV 106

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
           ++N+   I   N A  +L G      + +  +  +       +     ++          
Sbjct: 107 VLNQYDEIEWANEASRRLLGLKSPWDMGQRISNLIRYPDFVELMALDRKVSGT------- 159

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
                 +     L L I I          L + D++   Q +                + 
Sbjct: 160 --VELPSPINSALHLNIRILPYGEGQR-LLVVQDVTRLHQLE--------------RMRR 202

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
           DF+A VSHE+RTPLT + G+ E++  ++   +G+  +      +      +  +V DLL 
Sbjct: 203 DFIASVSHELRTPLTVLRGYLEIL--EKGKNVGSESWNRSFKTMGEQVGRMQHLVEDLLM 260

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706
           +S++ES        PV++ + ++E     ++ + +++  I       +  +  + + +  
Sbjct: 261 LSRLESRDKKPAETPVAVPKMLAEICQEARILSGDRQHQIHLEADAAL-WLRGNEQELHS 319

Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
              N++ NAI +TP+ G I +           L VRDTG G+    L +  + F +I   
Sbjct: 320 AFSNLVVNAIRYTPAQGNITLHWFKQQAGRPCLEVRDTGEGIAAEHLPRVTERFYRIDKG 379

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           +  +  GTGLGL + K ++  +     I S   KG++   +F +     P
Sbjct: 380 RSRKRGGTGLGLAIVKHVLSHHEAHLEIESELGKGSVFRCLFSIGRGQQP 429


>gi|330974369|gb|EGH74435.1| response regulator receiver:ATP-binding region [Pseudomonas
           syringae pv. aceris str. M302273PT]
          Length = 917

 Score =  276 bits (705), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 76/243 (31%), Positives = 140/243 (57%), Gaps = 8/243 (3%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  A+K A + S  KS+FLA +SHEIRTPL  I+GF+ +++     P    R  +Y   
Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSELTP----RQFDYLGT 325

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I++S + +L I+N++LD SKIE+GK+ L   P +L + + + ++++   A+ K++ + + 
Sbjct: 326 IEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSL 385

Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQI---IISTTHTSNEEVILRVRDTG 745
              + P  +  D   ++QI  N++SNAI FT  G  +   ++      + ++ + V+DTG
Sbjct: 386 VYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAMLEDETEEHAQLRISVQDTG 445

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+++ ++    + F Q  NS   +  GTGLGL ++K +++   G+  + STP +G+   
Sbjct: 446 IGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFW 505

Query: 806 IIF 808
           I  
Sbjct: 506 ISL 508


>gi|229506132|ref|ZP_04395641.1| sensor protein TorS [Vibrio cholerae BX 330286]
 gi|229356483|gb|EEO21401.1| sensor protein TorS [Vibrio cholerae BX 330286]
          Length = 984

 Score =  276 bits (705), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 71/238 (29%), Positives = 117/238 (49%), Gaps = 8/238 (3%)

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
           ++ AE+ S  KS FLA +SHEIRTP+  ++G + ++++             Y   I+RSG
Sbjct: 460 RQQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLQDTTLTAT----QQHYVQVINRSG 515

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
             +L I+ND+LD SKIE+G + +H     L   V E   L+Q  A EK I +      ++
Sbjct: 516 RSLLAILNDVLDYSKIEAGHLEIHHTHFDLYRLVRETHELMQSRAREKAITLTYHIDEDV 575

Query: 695 PRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-VILRVRDTGVGMTNYE 752
            +    D   + Q+  N++ N I FT  G ++ I      + + +   V D+G+G+   E
Sbjct: 576 TQYWQGDEIRIGQVLNNLVGNGIKFTEQG-EVRIRVRLAPDGQGIRFAVEDSGIGIAEEE 634

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
                  F Q    +  +  GTGLGL +++ +V A  G+  + S   +G+      PL
Sbjct: 635 QATLFDAFTQADAGR-RKLGGTGLGLAISRKLVQAMGGELQLASQLGQGSCFWFTLPL 691


>gi|160941294|ref|ZP_02088631.1| hypothetical protein CLOBOL_06187 [Clostridium bolteae ATCC
           BAA-613]
 gi|158435855|gb|EDP13622.1| hypothetical protein CLOBOL_06187 [Clostridium bolteae ATCC
           BAA-613]
          Length = 1075

 Score =  276 bits (705), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 98/438 (22%), Positives = 174/438 (39%), Gaps = 23/438 (5%)

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
              +D        R   ++ N    +                        +DV  +  + 
Sbjct: 350 RVLADYAVGKVDYRFEFLRRNNSGIIFWESTIMHSCQNPETGHVILFFYTQDVTEKKMQE 409

Query: 446 KMEIEVMQL--CSI--LEATSDG---IAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
           ++   + +L   SI  ++   D      +++   +           F   +  I  +   
Sbjct: 410 QLFKRIAELDYESITEVDILRDMAYRTILVDESNMDTMLPDHSR--FQSEIRAISGRYMD 467

Query: 499 VFLEQNTPSVMN-HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT 557
               +     ++  Y+   L+ +   T        T   ++   R+            + 
Sbjct: 468 EAAREEYLRKLDYDYMKSQLAHNDAYTFIVEMRDMTGATRVKRFRVFYIS-RELERVCVA 526

Query: 558 MHDISEWKQEKNK----LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
             D+++   ++ +    L+ A   AE+ ++ KSDFL+R+SHEIRTP+ AIIG S +    
Sbjct: 527 RTDVTDVVLKEQRQKEELAAALVAAEQANAAKSDFLSRMSHEIRTPMNAIIGMSTIAAQS 586

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
                 + +  +  + I  S   +L ++ND+LD+S+IESGKM L  E +  +E ++   S
Sbjct: 587 IG---DDEQVEDCISKIGISSRFLLSLINDILDMSRIESGKMLLKSEKIPTEEFINGINS 643

Query: 674 LVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
           +    A+ K +         +      D   ++Q+ +NILSNAI FT  GG++  S +  
Sbjct: 644 ICYSQADVKGVEYECIVDPVLDDYYIGDAMKLQQVLINILSNAIKFTQEGGKVTFSASQR 703

Query: 733 S----NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                +  +   V DTGVGM    L    +PF Q          GTGLGL ++K +VD  
Sbjct: 704 RKTKNDASLRFIVNDTGVGMNEEFLPHLFEPFSQESTGTTSLYGGTGLGLAISKNIVDMM 763

Query: 789 MGKFYIFSTPAKGTLIEI 806
            GK  + S    GT   +
Sbjct: 764 DGKITVRSIKGIGTEFTV 781



 Score = 51.2 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 68/224 (30%), Gaps = 26/224 (11%)

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
           LS + + P ++D        L   +           T+  + E  L  +F   E A+   
Sbjct: 71  LSPIYEQP-VADGIYNMSADLTLKNSKYTWYLRAFFTLVLSGEEWLVKSFHVAEPASSQK 129

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL------STNR 479
           +     G    +  +R+ +  +            +   G+      G I         NR
Sbjct: 130 DAEHYPGTLVMEHTSRLRQELLN----------NSLPGGMMG----GYIEDGFPFYFINR 175

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK--ITLGSTKEEK 537
            + +  GY  E          +         + + ++++  L+++ E         K+  
Sbjct: 176 RMLEYLGYENETEFVSDIEGMITNCMHPDDRNRVDQLVACQLQRSEEYVVEYRMRKKDGS 235

Query: 538 LLSLRI---IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578
            + +      +              DI+E KQ ++++    +  
Sbjct: 236 YIWVHDLGRRVTSEDNRPAIMSVCMDITEEKQMRDRIKEMYEEE 279


>gi|158339630|ref|YP_001521019.1| two-component hybrid sensor and regulator histidine kinase
           [Acaryochloris marina MBIC11017]
 gi|158309871|gb|ABW31487.1| two-component hybrid sensor and regulator histidine kinase
           [Acaryochloris marina MBIC11017]
          Length = 914

 Score =  276 bits (705), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 76/256 (29%), Positives = 134/256 (52%), Gaps = 11/256 (4%)

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           +Q   +L  AK+ AE  +  KS F+A +SHE+RTPL  I+G+++V++     P  + +  
Sbjct: 433 QQRTAELKVAKEKAEVANQAKSLFIANMSHELRTPLNGILGYAQVLER---SPTISDKAQ 489

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           +  + I + G  +L ++ND+LD+SKIE+GK++L  +PV L   +       ++ A +K +
Sbjct: 490 QQVHIIHKCGTHLLGMINDILDLSKIEAGKLDLMPKPVHLTSCLQGVAEACRVRAAQKGL 549

Query: 685 LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG---QIII-STTHTSNEEVIL 739
               +    +P  +  D + ++Q+  N+LSNAI FT  G    Q+ +   T +    +  
Sbjct: 550 EFVYAVDPGLPEGVELDEQRLRQVLFNLLSNAIKFTQQGTVTLQVSVAEVTRSDYRRLRF 609

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V DTGVG+    L++    F Q+   +Q + EGTGLGL +++ +V     +  + S   
Sbjct: 610 GVTDTGVGIAPAHLDQLFNAFVQV-GDRQKQAEGTGLGLAISRRLVQLMGSQIEVQSAVG 668

Query: 800 KGTLIEIIF--PLYDT 813
           +G+        PL   
Sbjct: 669 QGSQFSFELEVPLATE 684


>gi|261406783|ref|YP_003243024.1| integral membrane sensor hybrid histidine kinase [Paenibacillus sp.
           Y412MC10]
 gi|261283246|gb|ACX65217.1| integral membrane sensor hybrid histidine kinase [Paenibacillus sp.
           Y412MC10]
          Length = 1017

 Score =  276 bits (705), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 65/251 (25%), Positives = 130/251 (51%), Gaps = 4/251 (1%)

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           +   ++    +        K +FLA+ SHE+RTPL  IIG ++ + +   G L +P  I+
Sbjct: 381 RAFFQVERLSERLLTLDKLKDEFLAKTSHELRTPLHGIIGLADALIDGSSGKLPSP-VID 439

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
               +  SG  +  +VND+LD SK++  ++ L    V+L  AV   + ++   A +K + 
Sbjct: 440 LLRLMKVSGQRLAHLVNDILDFSKLKHQEIGLVLVTVNLRLAVELTLQVLNPLAEKKGLR 499

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +     +++  ++AD   ++QI  N++ NAI +T +G  + + T      +V +++ D+G
Sbjct: 500 LSHQLPDDM-YVMADENRLQQILHNLIGNAIAYTETG-TVTV-TAKRLQGQVSVQITDSG 556

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G++  +L++  + F QI    + +  GTG+GL + K +V+ + G+  + S   +G+   
Sbjct: 557 IGISEADLDRIFESFEQINPLDRSQQGGTGIGLSITKKLVELHGGRIGVTSGVGEGSTFS 616

Query: 806 IIFPLYDTSHP 816
              P+     P
Sbjct: 617 FTLPMAGEGEP 627


>gi|21241265|ref|NP_640847.1| two-component system sensor protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21106582|gb|AAM35383.1| two-component system sensor protein [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 769

 Score =  276 bits (705), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 72/250 (28%), Positives = 120/250 (48%), Gaps = 10/250 (4%)

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + + +L  AK+ AE  +  K +FLA +SHEIRTPL  II   E+I + +          +
Sbjct: 92  ELEQELLRAKQAAEAATLAKGEFLATMSHEIRTPLNGIIPMLELISSGQLSL----DQRD 147

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
                  S   +L IV+D+LD SK+E+ K+ L     +L E +   I L+Q  A  +++ 
Sbjct: 148 MLQTATGSSLQLLRIVDDILDYSKLEANKLELEITTFNLRELLDGVIQLLQRTAEGRQLR 207

Query: 686 IRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH----TSNEEVILR 740
           +      ++   +  D   ++Q+  N++ NAI FT  G  + I         +   +  +
Sbjct: 208 LSLDIEPSVRLLVRGDPIRLRQVLGNLIGNAIKFTERGS-VDIQLRRLGETRAQHLLRFQ 266

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           VRDTG+G+   +  +  + F Q   S      GTGLGL + K ++D   G+  + S P +
Sbjct: 267 VRDTGIGIAPDQQARLFRSFAQADASTTRLYGGTGLGLAICKRIIDLMGGRIGVESEPGR 326

Query: 801 GTLIEIIFPL 810
           G+      PL
Sbjct: 327 GSTFWFEIPL 336


>gi|260768445|ref|ZP_05877379.1| signal transduction histidine kinase [Vibrio furnissii CIP 102972]
 gi|260616475|gb|EEX41660.1| signal transduction histidine kinase [Vibrio furnissii CIP 102972]
          Length = 577

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 79/252 (31%), Positives = 127/252 (50%), Gaps = 12/252 (4%)

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
            +L  A+++AE+ +  KS FLA +SHE+RTPL A++G  +++++       +    +   
Sbjct: 194 RELKVAQQLAEQANQSKSQFLAMMSHELRTPLNAVLGLIDLLRDD-----SDAYQQDMLE 248

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            ++ S  L+L I+ND+LD+S+IESG   L    +SL   +  A+      A  K I    
Sbjct: 249 QMENSAELLLVIINDILDLSRIESGHFELQRHWISLSRKLQHALEYHSQVAQAKDITFNV 308

Query: 689 SFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747
             +         D   + QI  NI+ NAI FT  G  + +S   T+ + + + V+D+G+G
Sbjct: 309 KASICEQFEYWVDSVRLTQILFNIIGNAIKFTHHGF-VDVSL-VTARDRLEIEVKDSGIG 366

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           + N  +E    PF Q   S      GTGLGL + K +V+   G   + S   +G+L  I 
Sbjct: 367 IDNERIEHLFSPFIQADTSITRNYGGTGLGLAITKHLVELMGGSITVSSKLGEGSLFTIS 426

Query: 808 FPL----YDTSH 815
            PL     +TSH
Sbjct: 427 IPLQSRSSETSH 438


>gi|256762633|ref|ZP_05503213.1| sensor histidine kinase [Enterococcus faecalis T3]
 gi|256683884|gb|EEU23579.1| sensor histidine kinase [Enterococcus faecalis T3]
          Length = 506

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 71/363 (19%), Positives = 155/363 (42%), Gaps = 30/363 (8%)

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
            Q   +L+    G+ II+ +G +   N  + ++ G        K       +        
Sbjct: 165 EQFHELLDELMIGVFIIDTQGRLRLLNPKMQEMLGLSA-----KNMQSNYLEVIQDADLI 219

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY--SLTMHDISEWKQEKN 569
           +L   +  +     ++IT+        L L +       ++ Y      +D++  +Q + 
Sbjct: 220 HLIHQVVAEKNSLHQEITVTQGPTPLRLDLSLRYLDDQSANDYQVLGIAYDLTRVRQLE- 278

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
                          + DF++ VSHE++TP+T+++GF+E + +            ++ + 
Sbjct: 279 -------------KMQKDFVSNVSHELKTPVTSLLGFTETLIDG--AKEDPEVLNQFLHI 323

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           + +    +  ++ ++L++S+  S  +    + ++L++ ++E +   Q     K++    +
Sbjct: 324 MQKDAQRLQQLIQEILELSR-GSATIPYAEQEITLEKFITEILGSYQQQLAAKQLK---T 379

Query: 690 FANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747
             + +P             I  N++ NAI ++   GQI IS     N+++ L V+DTG+G
Sbjct: 380 VVHGLPESQFFTKYELFYPIVKNLIENAIQYSQENGQITISYAIE-NQQLRLSVQDTGIG 438

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           ++  + E+  + F ++  ++     GTGLGL + +   +   GK  I S    GT   I 
Sbjct: 439 ISQKDQERIFERFYRVDKARSRHSGGTGLGLAIVQNYTELLGGKIAIDSHLGLGTTFTIT 498

Query: 808 FPL 810
            PL
Sbjct: 499 LPL 501


>gi|242824735|ref|XP_002488317.1| sensor histidine kinase, putative [Talaromyces stipitatus ATCC 10500]
 gi|218713238|gb|EED12663.1| sensor histidine kinase, putative [Talaromyces stipitatus ATCC 10500]
          Length = 2232

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 76/256 (29%), Positives = 130/256 (50%), Gaps = 12/256 (4%)

Query: 565  KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
            +  + +  H  K+ E+ ++ KS FLA +SH++RTP+  IIG SE+++             
Sbjct: 1810 RIAEAEAIHNIKLKEEAANAKSTFLANISHDLRTPMNGIIGLSELLRETNLSK----DQG 1865

Query: 625  EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
            EY   I    + +L ++ND+LD SK+E GKM L    ++L + +SE +  +     + ++
Sbjct: 1866 EYMESIRICADTLLALINDILDFSKLEVGKMKLSIVSMNLKDTISEVVQALFHANRDNKL 1925

Query: 685  LIRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR-- 740
                +     P   +L D   + QI +N+LSN+  FTP+G  + IS   T   +  +R  
Sbjct: 1926 ETVENLDQIPPDLVVLGDPVRLHQIIMNLLSNSYKFTPNGS-VSISGKVTRAGKRRIRLE 1984

Query: 741  --VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA-NMGKFYIFST 797
              V DTG+G+++ +  +  KPF Q  +S      G+GLGL + KA+++    G   + ST
Sbjct: 1985 CSVSDTGIGISDEQKSRLFKPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGTISLEST 2044

Query: 798  PAKGTLIEIIFPLYDT 813
               GT +    P +  
Sbjct: 2045 LGVGTTVTFHIPFHKA 2060


>gi|302185510|ref|ZP_07262183.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase, HAMP region:histidine
           [Pseudomonas syringae pv. syringae 642]
          Length = 917

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 76/243 (31%), Positives = 140/243 (57%), Gaps = 8/243 (3%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  A+K A + S  KS+FLA +SHEIRTPL  I+GF+ +++     P    R  +Y   
Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSELTP----RQFDYLGT 325

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I++S + +L I+N++LD SKIE+GK+ L   P +L + + + ++++   A+ K++ + + 
Sbjct: 326 IEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSL 385

Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQI---IISTTHTSNEEVILRVRDTG 745
              + P  +  D   ++QI  N++SNAI FT  G  +   ++      + ++ + V+DTG
Sbjct: 386 VYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAMLEDETEEHAQLRISVQDTG 445

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+++ ++    + F Q  NS   +  GTGLGL ++K +++   G+  + STP +G+   
Sbjct: 446 IGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFW 505

Query: 806 IIF 808
           I  
Sbjct: 506 ISL 508


>gi|229918112|ref|YP_002886758.1| histidine kinase [Exiguobacterium sp. AT1b]
 gi|229469541|gb|ACQ71313.1| histidine kinase [Exiguobacterium sp. AT1b]
          Length = 463

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 68/253 (26%), Positives = 129/253 (50%), Gaps = 5/253 (1%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E  +  + L+   +        + +FLA VSHE+RTPL+ I G++E+++++    L    
Sbjct: 213 EIGELADTLNSMAESLGLVEEQRKEFLANVSHELRTPLSYIRGYTEMLQDE---TLDEKT 269

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             +Y + I+   N +  +V DLLD++++E     +  EPV   + + + +  ++  A  K
Sbjct: 270 RAQYYDIIENETNRLQRLVTDLLDLAQLERDSYPMTKEPVVYSQVLEDVLYRLEPIARAK 329

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
            + I +    ++  IL D   ++Q+  N+L NA+ +T +G  I + T     E  I  +R
Sbjct: 330 GVTIESDLDFDLI-ILGDHDRLEQVIGNLLDNALRYTDAGKTIHVKT-FAETEYAITEIR 387

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G G+   +L+K  + F ++  S+  +  GTGLGL +AK +++ + G  +  S   +GT
Sbjct: 388 DEGRGIPKEDLDKLTERFYRVNKSRTRKDGGTGLGLAIAKHIIERHEGSLHFSSEVGQGT 447

Query: 803 LIEIIFPLYDTSH 815
            + +  PL     
Sbjct: 448 TVTVGLPLLPDDE 460


>gi|83720326|ref|YP_443279.1| histidine protein kinase PhoR [Burkholderia thailandensis E264]
 gi|167621265|ref|ZP_02389896.1| histidine protein kinase PhoR [Burkholderia thailandensis Bt4]
 gi|257139515|ref|ZP_05587777.1| histidine protein kinase PhoR [Burkholderia thailandensis E264]
 gi|83654151|gb|ABC38214.1| histidine protein kinase PhoR [Burkholderia thailandensis E264]
          Length = 436

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 76/411 (18%), Positives = 152/411 (36%), Gaps = 35/411 (8%)

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT-----RINKRKMEIEVMQLCSILEATS 462
                   +      + P      G     +           R++E +  +    ++A+ 
Sbjct: 49  HTQRLWRLLDAPVYGEVPSAPGIWGEIYYRLHKLAKQWHAQVRQVEQQHSRFIQAIQASP 108

Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522
           +G+A+++    I   N      FG   +  LR+  T  +         +           
Sbjct: 109 NGVAMLDDRDQIEWCNAIAEVHFGLDAKRDLRQHITHLVRHPDFVRYLN----------G 158

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES 582
           Q  ++  +         ++  +       +   L   DI+E ++                
Sbjct: 159 QHYDETLVMRGMGGNRQNVLAVQVFPYGENRKLLLTQDITELERT--------------D 204

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
           + + DF+A VSHE++TPLT + GF E ++     PL +     Y   +++  + +  IV 
Sbjct: 205 AMRRDFVANVSHELKTPLTVLSGFLETMRE---LPLSDDERARYLELMEQQASRMRHIVT 261

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702
           DLL ++K+E          V +   +       Q  +N     I       +  +     
Sbjct: 262 DLLVLAKLEGESKPPADRAVDMRTVLDHLKDDAQTLSNGHH-EITFKVDETL-AVTGAQT 319

Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
            +     N+++NAI +TP GG I +        + +  V D+G+G+   +L +  + F +
Sbjct: 320 EIFSALGNLVTNAIRYTPDGGTIRVEWR-RDGAQAVFSVTDSGLGIPAADLPRLTERFYR 378

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
           +  S+     GTGLGL + K ++  +  +  I S   +G+     FP + T
Sbjct: 379 VDRSRSRDTGGTGLGLAIVKHVLQRHDAQLSIQSEEGRGSTFSARFPAHRT 429


>gi|300088023|ref|YP_003758545.1| multi-sensor signal transduction histidine kinase [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299527756|gb|ADJ26224.1| multi-sensor signal transduction histidine kinase [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 723

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 78/514 (15%), Positives = 166/514 (32%), Gaps = 48/514 (9%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLS 367
             L        +     +D       +      + + N +  L    +  +      G  
Sbjct: 241 TRLYRESLAIRHSLERWLDSMVDAVIIAKRDRTISFINRAARLHLGVEVGEACYSVHG-- 298

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
                         +   +   +         +  I         +   P  +A+     
Sbjct: 299 ---------RTEPCEDCPMAGLNGRTR-VPMSVAEI---DGRFYEIASAPLLEADGA--- 342

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA---VSKL 484
                +  +  + +  +R+++       ++ E     + ++ REG I+  N+     +  
Sbjct: 343 YGLIKVLRDVTERQTAERRLQQSEQLFRTLAELLPSMVFVL-REGDIVYANQRFFDAATH 401

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
             +  +                  +   L   L+ +   +  +    S    + + + + 
Sbjct: 402 LTFNQDGEKADDVIDLFVPACRPAVAQDLARRLAGENISS--RECRISDASGREIPVILS 459

Query: 545 IKKLPFSSCY--SLTMHDISEWKQEKNKLSHAKKIAEKESSHKS--DFLARVSHEIRTPL 600
           ++             + DIS  KQ + +    +      +   S     + ++HEI  PL
Sbjct: 460 LEAFEDDGRVTVIGVLSDISVQKQAETERRKMEARMALAAHQASIGVMASGIAHEINNPL 519

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
           T +IGFS+++  +   P       + A  ID     V  I+  LL  +           E
Sbjct: 520 TGVIGFSQLLAQRPDLP---EDIRDDAAIIDSGAQRVAGIIRRLLTFA----DPRPPRQE 572

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720
           P  L+  VSE +  +        I +    +  +P+++ D   ++Q  LNI+ NA+  T 
Sbjct: 573 PADLNNLVSETLKSMAAELEHHGIELILELSPELPQVITDASQIQQAFLNIIKNAV--TE 630

Query: 721 ----SG-GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
                G  ++ ++T         +   D G G+    L +   PF       +  G+GTG
Sbjct: 631 LHKLEGAKRLTVTTEVR-GRMTAVTFADNGPGIPPDNLPRIFDPFFTT----REVGQGTG 685

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           LGL +   ++  N G     + P  G +  +  P
Sbjct: 686 LGLSVCHGIITRNSGCITAANRPEGGAVFTVELP 719



 Score = 65.0 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 36/353 (10%), Positives = 79/353 (22%), Gaps = 24/353 (6%)

Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS 242
            +   R+  +  A+   L++    + +                +        R+   V  
Sbjct: 237 TLENTRLYRESLAIRHSLERWLDSMVDAVII-------AKRDRTISFINRAARLHLGVEV 289

Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302
               Y+        E  P+      +                                  
Sbjct: 290 GEACYSVHGRTEPCEDCPMAGLNGRTRVPMSVAEIDGRFYEIASAPLLEADGAYGLIKVL 349

Query: 303 LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLL-LTKYKSVDDIE 361
                  +      + E L     +  P   FV   G++ YAN  F    T      D E
Sbjct: 350 RDVTERQTAERRLQQSEQLFRTLAELLPSMVFVLREGDIVYANQRFFDAATHLTFNQDGE 409

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
            A  +  L                L   +      S+R   I       + +        
Sbjct: 410 KADDVIDLFVPACRPAVAQDLARRLAGEN-----ISSRECRISDASGREIPVILSLEAFE 464

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR-- 479
           +     +   G+  +    +  + +      ++       S G+      GI    N   
Sbjct: 465 DDGR--VTVIGVLSDISVQKQAETERRKMEARMALAAHQASIGVM---ASGIAHEINNPL 519

Query: 480 ----AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528
                 S+L     +          +  +    +   +  +L+    +   + 
Sbjct: 520 TGVIGFSQLLAQRPDLPEDIRDDAAIIDSGAQRVAGIIRRLLTFADPRPPRQE 572



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/227 (10%), Positives = 58/227 (25%), Gaps = 15/227 (6%)

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM----TFIPFEKANQ 423
           TLL     +   A     L             +       + +  +     F      N 
Sbjct: 164 TLLVNEIKAAVTADGANSLVAESLAQAGVDMIVPVALKQGQLAALLLVGKRFKGQYSEND 223

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
               +   G     ++     R+       L   L++  D + I  R+  I   NRA   
Sbjct: 224 RMALLVMAGHLAVTLENTRLYRESLAIRHSLERWLDSMVDAVIIAKRDRTISFINRAARL 283

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
             G  V +         +   T    +  +  +                  + +   +  
Sbjct: 284 HLGVEVGEAC-----YSVHGRTEPCEDCPMAGLNGRTRVPMSVAEI-----DGRFYEIAS 333

Query: 544 IIKKLPFSS-CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
                   +      + D++E +  + +L  ++++    +      +
Sbjct: 334 APLLEADGAYGLIKVLRDVTERQTAERRLQQSEQLFRTLAELLPSMV 380


>gi|209966271|ref|YP_002299186.1| non-motile and phage-resistance protein [Rhodospirillum centenum
           SW]
 gi|209959737|gb|ACJ00374.1| non-motile and phage-resistance protein [Rhodospirillum centenum
           SW]
          Length = 818

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 133/696 (19%), Positives = 238/696 (34%), Gaps = 68/696 (9%)

Query: 178 FRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK 237
              FG V   R   D  A+     ++   L E+     + + E           P L   
Sbjct: 113 AAAFGRVEAVRRRLDA-AITLPAAEREPGLREVWLESVNAQAESMHRILIALNQPALARG 171

Query: 238 NKVSSLTEYYAHKDDVLKTEKYPLL----TSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293
            +   L    A    + +     +L          +   +    ++         F   +
Sbjct: 172 GQAVPLELLIAEGLRLREEAGRDILTLIRAEAVPPILTPDRRAALDQAGQRLTLRFERTR 231

Query: 294 NNSKESFEYLSHRNHPSLS--------AYFDEGENLTPETVDKCPIPF------------ 333
              +++ + L                 A         P      P               
Sbjct: 232 ELVEQTGDPLLADAFARAQNLFLTSYFAERARLLAQVPVEAGTLPAAATAGLNAVTDLLS 291

Query: 334 -FVYSHGNLFYANPSF-LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR 391
             +           +  + L    +++ +     ++TL+    +        V L RS R
Sbjct: 292 AAMDRADKAALVRQAESVRLLGMSALEMLAAV--VATLIAVGVVHFRVLAPIVRLTRSMR 349

Query: 392 TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT----RINKRKM 447
                         +R + +           +    + ++  E +  +          ++
Sbjct: 350 QLADGDLEAEVPVPDRHDEIGEMARAVSVFKRNAHQLDEDNRERQRAERMLTVEREILEL 409

Query: 448 EIEVMQLCSILEATSDGI-----------AIINREGIILSTNRAVSKL------------ 484
                    IL++  +G+            ++  +GI L    A   L            
Sbjct: 410 TASRAPQERILQSVCEGVEQQVEGSACSVMLLEPDGIHLRI-GAAPHLPTGLLAAVDGVA 468

Query: 485 ----FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE-KLL 539
                G     I  +  T+  +         +   +    LR       L +  +     
Sbjct: 469 IGPGVGSCGPAIYDRRPTITTDMEADPNWQGFRPALAGSGLRACWSLPILTAEGKPLGAF 528

Query: 540 SLRIIIKKLPFSSCYSLTMHDIS------EWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
           ++     + P      +               + +  L  AK  AE  S  KS+FLA +S
Sbjct: 529 AVYHTSARGPDVREMEMARRASHLAAIAIASHEAERLLEQAKAAAELGSRTKSEFLANMS 588

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HE+RTPL AIIGF+EV++++            YA+ I  SG  +L+++ND+LD+SK+E+G
Sbjct: 589 HELRTPLNAIIGFAEVLESELKQQGSPIAKAGYASDIAASGRHLLNLINDILDVSKMEAG 648

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILS 713
           K+ L        E ++    +V+  A E+RI +R      +P +L D    KQI LN+LS
Sbjct: 649 KVELRERICDPGELLAGCERIVRARAMERRIDLRLEVPPGLPPVLVDDVKFKQIVLNLLS 708

Query: 714 NAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
           NAI FT   G + +         + + V DTG+G+   +LEK   PF Q+ N       G
Sbjct: 709 NAIKFTAPSGSVRVKVQADPARGLSIAVSDTGIGIRAEDLEKVFIPFNQVDNIYARINPG 768

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           TGLGL L++ + + + G+ +I S   +GT   +  P
Sbjct: 769 TGLGLALSRGLAELHGGQLFIESVFGEGTTATLRLP 804


>gi|146339844|ref|YP_001204892.1| sensor histidine kinase [Bradyrhizobium sp. ORS278]
 gi|146192650|emb|CAL76655.1| putative sensor histidine kinase with PAS/PAC and Response
           regulator receiver domains [Bradyrhizobium sp. ORS278]
          Length = 922

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 82/528 (15%), Positives = 171/528 (32%), Gaps = 42/528 (7%)

Query: 304 SHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEI 362
             R   +  A F   E L    V+        +  HG +   N +   L  Y + D +  
Sbjct: 287 QRRQSETERARFIARERLFSAVVESSNDAIITLTLHGKITSWNRAAEQLFGYGAEDALGS 346

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
              L        +  +   +   +                 +      + ++       +
Sbjct: 347 DIAL-------IVPPDRRGEVDGILARIGQGEKIEHHETVRRHRDGREVEVSLSVSPILD 399

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
                +  + +  +  +++  +  +  E  +   I E + D I I +  G ++  + +  
Sbjct: 400 ARGTVIGASKVARDITESKRTRNALTRETEERRRIFETSQDLILIADSRGNLIQVSPSTR 459

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
            + GY  E+++ +  + F+       +   + +                  KE + + L 
Sbjct: 460 AILGYRPEEMVGRNASDFVYPPELEAVRSQMRDCRRGRDIH--NFEAQLLHKEGRGVVLN 517

Query: 543 IIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
            +         +     D++E +  + +   A+K+              ++H+    LT 
Sbjct: 518 WMASWSDPMRRHFFVGRDLTEKRAAEAQFRQAQKM-----EAVGQLTGGIAHDFNNILTV 572

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           I G   ++ +        P     A  ID S +    +   LL  ++    K  L    +
Sbjct: 573 ITGSIAILAD---AVADRPELAAIAKLIDDSADRGAHLTRQLLAFAR----KQPLQPVDL 625

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
            ++  + E  +L++    E  I I      +    LAD   +    +N+  NA    P G
Sbjct: 626 DVNALIIETAALLRPTLGEH-IEIERILCVDPCTALADPNQLATSVVNLALNARDAMPQG 684

Query: 723 GQIIISTT--------------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
           G++ + T                   + V++ V DTG G+    L+K   PF       +
Sbjct: 685 GKLTLETANVTLDQDYANANAEVAVGDYVMIAVSDTGSGIPPAYLDKVFDPFFSTKGLGK 744

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
             G G      +    V  + G   ++S    GT I++  P   TS P
Sbjct: 745 GTGLGL----SMVFGFVKQSGGHIKVYSEVGHGTSIKLYLP-RSTSAP 787



 Score =  102 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 69/191 (36%), Gaps = 11/191 (5%)

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME-----IEVMQLCSILEATS 462
                +    F       +N+         +  +  + + E            +++E+++
Sbjct: 254 GRIYGLFAASFVLGVLLADNVGLQQRLTRLLQQQRRQSETERARFIARERLFSAVVESSN 313

Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522
           D I  +   G I S NRA  +LFGY  ED L     + +  +    ++  L  I   +  
Sbjct: 314 DAIITLTLHGKITSWNRAAEQLFGYGAEDALGSDIALIVPPDRRGEVDGILARIGQGEKI 373

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIA 578
           +     T+   ++ + + + + +  +  +    +       DI+E K+ +N L+   +  
Sbjct: 374 E--HHETVRRHRDGREVEVSLSVSPILDARGTVIGASKVARDITESKRTRNALTRETEER 431

Query: 579 EKESSHKSDFL 589
            +      D +
Sbjct: 432 RRIFETSQDLI 442



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/317 (9%), Positives = 83/317 (26%), Gaps = 13/317 (4%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI-DPNNHIGDLLKRQNTWYGKTTLW 150
           HG +   +    +  G  A   +G  +  +       + +  +  + + +   + +T   
Sbjct: 322 HGKITSWNRAAEQLFGYGAEDALGSDIALIVPPDRRGEVDGILARIGQGEKIEHHETVRR 381

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
             +G    V + L+  PI        G     +          R    R  ++   + E 
Sbjct: 382 HRDGR--EVEVSLSVSPILDARGTVIGASK--VARDITESKRTRNALTRETEERRRIFET 437

Query: 211 KKGHSSVEKEKYDIFSQQSPPPHL---RMKNKVSSLT-EYYAHKDDVLKTEKYPLLTSEE 266
            +    +   + ++         +   R +  V     ++    +      +        
Sbjct: 438 SQDLILIADSRGNLIQVSPSTRAILGYRPEEMVGRNASDFVYPPELEAVRSQMRDCRRGR 497

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
                +                        +  F         +  A F + + +  E V
Sbjct: 498 DIHNFEAQLLHKEGRGVVLNWMASWSDPMRRHFFVGRDLTEKRAAEAQFRQAQKM--EAV 555

Query: 327 DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
            +         +  L     S  +L    +V D      ++ L+D       +  + ++ 
Sbjct: 556 GQLTGGIAHDFNNILTVITGSIAIL--ADAVADRPELAAIAKLIDDSADRGAHLTRQLLA 613

Query: 387 YRSDRTCIAASARLHTI 403
           +   +        ++ +
Sbjct: 614 FARKQPLQPVDLDVNAL 630



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/248 (10%), Positives = 54/248 (21%), Gaps = 14/248 (5%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN-HIGDLLKRQNTWYGKTT 148
           D+ G L ++S      +G    +M+G    D      ++     + D  + ++    +  
Sbjct: 446 DSRGNLIQVSPSTRAILGYRPEEMVGRNASDFVYPPELEAVRSQMRDCRRGRDIHNFEAQ 505

Query: 149 LWPIEGTNLYV-PIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
           L   EG  + +  +   + P+          R F +           A  ++  K  +  
Sbjct: 506 LLHKEGRGVVLNWMASWSDPMR---------RHFFVGRDLTEKRAAEAQFRQAQKMEAVG 556

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
                           I    +            +                   L +   
Sbjct: 557 QLTGGIAHDFNNILTVITGSIAILADAVADRPELAAIAKLIDDSADRGAHLTRQLLAFAR 616

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQN---NSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
             P Q     +N                    +              +       NL   
Sbjct: 617 KQPLQPVDLDVNALIIETAALLRPTLGEHIEIERILCVDPCTALADPNQLATSVVNLALN 676

Query: 325 TVDKCPIP 332
             D  P  
Sbjct: 677 ARDAMPQG 684


>gi|71907451|ref|YP_285038.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase A, N-terminal
           [Dechloromonas aromatica RCB]
 gi|71847072|gb|AAZ46568.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal
           [Dechloromonas aromatica RCB]
          Length = 582

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 79/250 (31%), Positives = 124/250 (49%), Gaps = 9/250 (3%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E KQ + +   AK+IAE E+  KS FL  +SHEIRTP+  I+G ++++       L    
Sbjct: 179 ERKQSEEEALRAKEIAEAENQAKSRFLTTMSHEIRTPMNGILGMAQLML---VSRLTEQE 235

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             ++A  I  SG  +L ++ND+LD SKIE+GK+ L     S  + V EA +L    A  K
Sbjct: 236 QHDHARTILNSGQSLLALLNDILDFSKIEAGKLELTPAVFSPRQIVDEAATLFAESAKAK 295

Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTT----HTSNEEV 737
            ++I   +   I +  LAD   ++Q+  N+++N+I FT SG  + I             +
Sbjct: 296 GLVIEAVWHGPIDQRYLADPMRLRQMLANLINNSIKFTGSGF-VRIEGREIEPMADASLL 354

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
              V D+G+G+   +L    +PF Q  +S      G+GLGL +   +     G   + S 
Sbjct: 355 EFSVTDSGIGIPPEKLTLLFRPFSQADSSTTREYGGSGLGLSIVHNLAKLMGGDAGVESE 414

Query: 798 PAKGTLIEII 807
           P KG+     
Sbjct: 415 PGKGSRFWFR 424


>gi|150390093|ref|YP_001320142.1| histidine kinase [Alkaliphilus metalliredigens QYMF]
 gi|149949955|gb|ABR48483.1| histidine kinase [Alkaliphilus metalliredigens QYMF]
          Length = 451

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 61/248 (24%), Positives = 124/248 (50%), Gaps = 4/248 (1%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E  Q     +       +    + DF+A VSHE++TPLT++   SE +  Q  G +    
Sbjct: 202 EISQLGVAYNLMSTKLSQIDKQRRDFVANVSHELKTPLTSMKLLSESLLMQEGGDI--AI 259

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
           Y E+ + ID   + +  I+  LL +  +   K+ + +E   ++  V +    ++  A +K
Sbjct: 260 YREFLSDIDTEIDRLNKIIESLLMLVDLNEDKLTIEYEITYVNYLVEKVTQSIKPLAEQK 319

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           +I I  +  + I +I  D   + Q   NI+ NA+ +T  GG+++I+  +      I+++ 
Sbjct: 320 KIKIIINQWHKI-QIYLDQGKIHQALTNIIYNAVKYTEDGGKVVITL-YREGNRAIIKIA 377

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G+G++  EL    + F ++ +++  +  G+GLGL +++ ++  + G   + S   KGT
Sbjct: 378 DNGIGISEEELPYIFERFYRVDSARSRKTGGSGLGLSISEQIIHLHQGTIEVESKEHKGT 437

Query: 803 LIEIIFPL 810
            + +  P+
Sbjct: 438 TVYVKLPI 445


>gi|320180364|gb|EFW55295.1| Hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Shigella boydii ATCC 9905]
          Length = 1127

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 91/419 (21%), Positives = 165/419 (39%), Gaps = 12/419 (2%)

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
            W+  +                  +    +       ++ +  +E ++    ++ ++  +
Sbjct: 458 TWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISFRKALSDSLPN 517

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--NTPSVMNHYLTEILSLDL 521
              ++N +G ++S N A    F          P         +  S  +    E      
Sbjct: 518 PTYVVNWQGNVISHNSAFEHYFTADYYKNAMLPLENSESPFKDVFSNTHEVTAETKENRT 577

Query: 522 RQTLEKIT-LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
             T       G  K        +       ++ Y     DI+E +   N L   K  A K
Sbjct: 578 IYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLINALEVEKNKAIK 637

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            +  KS FLA +SHEIRTP+++I+GF E++       L   + +E  +    +G  +L +
Sbjct: 638 ATVAKSQFLATMSHEIRTPISSIMGFLELLS---GSGLSKEQRVEAISLAYATGQSLLGL 694

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILA 699
           + ++LD+ KIESG   L  + V +   V          A  K I +  S    +   +  
Sbjct: 695 IGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPDHYLVKI 754

Query: 700 DLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMTNYELEKA 756
           D ++ KQ+  N+LSNA+ FT  G  +I  S  H  +   ++   + D+G G++  E ++ 
Sbjct: 755 DPQAFKQVLSNLLSNALKFTTEGAVKITTSMVHIDDNHAVIKMTIMDSGSGLSQEEQQQL 814

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            K + Q   S   +  G+GLGL + K ++    G   + S P  GT   I  P+  +  
Sbjct: 815 FKRYSQT--SAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVEISQQ 871


>gi|294508517|ref|YP_003572576.1| sensor histidine kinase [Salinibacter ruber M8]
 gi|294344846|emb|CBH25624.1| sensor histidine kinase [Salinibacter ruber M8]
          Length = 491

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 64/256 (25%), Positives = 124/256 (48%), Gaps = 2/256 (0%)

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           + + +  + L    +   +    + + +A VSH++R+P+ +I G+ E + + + G L   
Sbjct: 237 TCFNRMADNLQETMEELRQADRMRRELVANVSHDLRSPIASIQGYLETV-SMKDGDLPPE 295

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
               Y     R+   +  +VN+L ++SK+E+ ++    E   + E V + +   +  A E
Sbjct: 296 ERQRYVTTALRNTKRLNTLVNELFELSKLETKQVEPTIEAFPIAELVQDVVMQYEPRAEE 355

Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
           + + +R        R+ AD+  V++   N++ NAIH+TP GGQ+ +        EV + V
Sbjct: 356 QAVDLRPDLPERHARVEADIGLVERALSNLIDNAIHYTPEGGQVRVRLD-NKQGEVCVAV 414

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            DTG G+   +L    + F ++  S+     G GLGL +AK +++ +     + ST  +G
Sbjct: 415 ADTGPGIPEDDLPHIFERFYRVDKSRDRDRGGAGLGLAIAKTILELHGRTLEVESTVGEG 474

Query: 802 TLIEIIFPLYDTSHPH 817
           T+     P+   S P 
Sbjct: 475 TVFRFRLPVEAPSGPE 490


>gi|282899118|ref|ZP_06307099.1| Histidine Kinase [Cylindrospermopsis raciborskii CS-505]
 gi|281196034|gb|EFA70950.1| Histidine Kinase [Cylindrospermopsis raciborskii CS-505]
          Length = 1068

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 76/264 (28%), Positives = 134/264 (50%), Gaps = 10/264 (3%)

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
           + +   D++E +Q   +L+       + +  K +FLA +SHE++TPLTA++G S ++ ++
Sbjct: 342 WLVLATDVTEQQQLFKELAAKNADLIQLNRLKDEFLACISHELKTPLTAVLGLSRLLVDK 401

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI- 672
             G L N R   YA  I +SG  ++ +VND+LD++++E+G+M L   PV + E    A+ 
Sbjct: 402 NLGEL-NERQARYAGLIHQSGRHLMSVVNDILDLTRMETGQMELTPSPVRIQEVCDRALV 460

Query: 673 --SLVQLYANEKR-----ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725
               V      K           S    +  I+AD   ++Q+ +++L NA  FT S G++
Sbjct: 461 EARSVHNQTGRKGESLPSHEFSLSIEPGLKEIVADELRLRQMLVHLLGNAFKFTESFGKV 520

Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
            +         +   V DTG+G+ +++     + F Q+ N    + EGTGLGL L +A+ 
Sbjct: 521 GLRVNRWE-GWIAFTVWDTGIGIPDHQQHLIFQKFQQLENPLNRQFEGTGLGLVLTRALA 579

Query: 786 DANMGKFYIFSTPAKGTLIEIIFP 809
             + G     S   KG+   ++ P
Sbjct: 580 RLHGGDVSFLSREGKGSQFTLLLP 603


>gi|194432900|ref|ZP_03065184.1| sensor histidine kinase/response regulator EvgS [Shigella
           dysenteriae 1012]
 gi|194418888|gb|EDX34973.1| sensor histidine kinase/response regulator EvgS [Shigella
           dysenteriae 1012]
 gi|332090130|gb|EGI95229.1| sensor protein evgS [Shigella dysenteriae 155-74]
          Length = 1128

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 91/419 (21%), Positives = 165/419 (39%), Gaps = 12/419 (2%)

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
            W+  +                  +    +       ++ +  +E ++    ++ ++  +
Sbjct: 459 TWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISFRKALSDSLPN 518

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--NTPSVMNHYLTEILSLDL 521
              ++N +G ++S N A    F          P         +  S  +    E      
Sbjct: 519 PTYVVNWQGNVISHNSAFEHYFTADYYKNAMLPLENSESPFKDVFSNTHEVTAETKENRT 578

Query: 522 RQTLEKIT-LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
             T       G  K        +       ++ Y     DI+E +   N L   K  A K
Sbjct: 579 IYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYICGWQDITETRDLINALEVEKNKAIK 638

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            +  KS FLA +SHEIRTP+++I+GF E++       L   + +E  +    +G  +L +
Sbjct: 639 ATVAKSQFLATMSHEIRTPISSIMGFLELLS---GSGLSKEQRVEAISLAYATGQSLLGL 695

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILA 699
           + ++LD+ KIESG   L  + V +   V          A  K I +  S    +   +  
Sbjct: 696 IGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPDHYLVKI 755

Query: 700 DLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMTNYELEKA 756
           D ++ KQ+  N+LSNA+ FT  G  +I  S  H  +   ++   + D+G G++  E ++ 
Sbjct: 756 DPQAFKQVLSNLLSNALKFTTEGAVKITTSMVHIDDNHAVIKMTIMDSGSGLSQEEQQQL 815

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            K + Q   S   +  G+GLGL + K ++    G   + S P  GT   I  P+  +  
Sbjct: 816 FKRYSQT--SAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVEISQQ 872


>gi|254227606|ref|ZP_04921037.1| conserved hypothetical protein [Vibrio sp. Ex25]
 gi|262395654|ref|YP_003287507.1| sensor histidine kinase [Vibrio sp. Ex25]
 gi|151939648|gb|EDN58475.1| conserved hypothetical protein [Vibrio sp. Ex25]
 gi|262339248|gb|ACY53042.1| sensor histidine kinase [Vibrio sp. Ex25]
          Length = 785

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 74/249 (29%), Positives = 120/249 (48%), Gaps = 7/249 (2%)

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            KQ   ++  A+  AE+ +  KS FLA +SHE+RTP+  ++G S++I  +   P      
Sbjct: 249 LKQLNLEIEEARNKAERAAKAKSSFLAAMSHELRTPMNGVLGLSQMIAEETNEPTT---- 304

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            EY   I  SG  ++ I+ND+LD SK+E  K+       +LD+ +S   S ++   +EK 
Sbjct: 305 KEYVKVILDSGQHLMTILNDILDFSKVEENKLEFEQAKFNLDQVISPVCSAIKPLIDEKN 364

Query: 684 ILIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS-NEEVILRV 741
           I +              D   ++QI  N+  NA+ FT  G  ++I T     N  +++ V
Sbjct: 365 IELIVENEVPEYVEFTGDCARLRQILFNLAGNAVKFTSEG-HVLIRTELDKVNHCLVMIV 423

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            DTG+G+   + E     F Q  +S   +  GTGLGL + K +     GK  + S    G
Sbjct: 424 SDTGIGIALDKQEHVFNSFEQADSSTTRKFGGTGLGLAIVKKLTGLMDGKITLKSVEGVG 483

Query: 802 TLIEIIFPL 810
           +   +  P+
Sbjct: 484 SQFIVELPI 492


>gi|54307917|ref|YP_128937.1| phosphate regulon sensor protein [Photobacterium profundum SS9]
 gi|46912343|emb|CAG19135.1| putative histidine protein kinase PhoR [Photobacterium profundum
           SS9]
          Length = 434

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 68/364 (18%), Positives = 136/364 (37%), Gaps = 29/364 (7%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           ++   + +  +  E+  D + +   EG I+  N+    L G    D   +P +  L    
Sbjct: 92  ELATLIRRFRNGAESMPDAVVVFRSEGNIVWCNKLAQHLLGLRWPDDAGQPISNLLRSPD 151

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
                        L++   L              +L + I +      Y + + D+S+ K
Sbjct: 152 FVRYIAKQEFEHPLEIASPLNYDR----------TLELRIMRYTEGE-YLMVVRDVSQLK 200

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           Q +                + +F A VSHE+RTP+T + G+ E+  ++    L  P + +
Sbjct: 201 QLEG--------------MRRNFFANVSHELRTPMTVLQGYLEM--SKDPEMLAGPMWGK 244

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
               +      +  +V  LL +SKIE+       E V++   +          + +K   
Sbjct: 245 AHGVMTEQLVRMNSLVEQLLTLSKIEAAPTIELEETVNIPAMLDILEKEAISLSGDKNQH 304

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
                  ++  +  D   ++    N++ NA+  TP    I +    ++     L V D+G
Sbjct: 305 FTFDVDASL-NVFGDEDQLRSAVSNLVYNAVKHTPCDANITVRWYLSAAG-PRLEVTDSG 362

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
            G+    + +  + F ++  ++     G+GLGL + K  +  +     I S   KG+   
Sbjct: 363 EGIGPQHIHRLTERFYRVDKARSRETGGSGLGLAIVKHALSHHDSLLEIESELDKGSTFS 422

Query: 806 IIFP 809
              P
Sbjct: 423 FTLP 426


>gi|239905919|ref|YP_002952658.1| sensor histidine kinase [Desulfovibrio magneticus RS-1]
 gi|239795783|dbj|BAH74772.1| sensor histidine kinase [Desulfovibrio magneticus RS-1]
          Length = 790

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 82/581 (14%), Positives = 178/581 (30%), Gaps = 60/581 (10%)

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD--EGENLTPE 324
             +           +            +   E    +        +  ++    +N   +
Sbjct: 241 RPVRAMIRATRAIASGRGFTGLDLKQSDELGELGRAIDTMGREVFAKQYELVRQKNRYQD 300

Query: 325 TVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
             +  P    V      L   N +F      +  +                   +     
Sbjct: 301 LFEHVPCTITVQDKNLRLLSYNQAFADEFHARPGE----------YCYKVYKGRDEPCVH 350

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
             + R+    +       T+  +               ++         I  +  +++  
Sbjct: 351 CPVIRTFEDGLPHVTEEITLDRDGCRRT-FFVSTSPMTDESGAIASVMEISLDISESKFL 409

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
           + ++E    +  +I       + +++  +  IL  N     L+GY   ++L +PF    +
Sbjct: 410 EEELERSRKKYQAIFSCIPSALFVLSPEDLTILECNSRPETLYGYEPVELLGRPFLSLFD 469

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL--SLRIIIKKLPFSSCYSLTMHD 560
           +   +     +         +          K+      ++R      P +  +  ++ D
Sbjct: 470 EPDVAPFEEAIRA-------ERHIARVRHRRKDGTDFFAAVRTSSAAYPGAQVFLASVTD 522

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ--RFGPL 618
           I+   + + +L  A K+A        +    V+HE+  P+T I   ++++  +  R   +
Sbjct: 523 ITSRLETEQQLIQASKMAT-----LGEMSTSVAHELNQPMTVIQTIADLLVRRVRRGQCV 577

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
                 E A  I R       I+N + +  +    K + H   VSL   +     L    
Sbjct: 578 DQDTLTEMAEGISRHIARATGIINHMREFGR----KSDRHVVAVSLGAVIRRTFELFSQQ 633

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG---------GQIIIST 729
              + I +      ++P + A    ++Q+ +N+L NA                 +I I+ 
Sbjct: 634 LKVRNIEVTFDLPGDLPDVAAQANPLEQVFMNLLLNARDAVDERYGQQAVPGVKRIAIAA 693

Query: 730 THT---SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
                   + V   V D G G+    L +  +PF          G+GTGLGL ++  +V 
Sbjct: 694 GRETVDGRQFVTASVADNGPGIAQEVLGRIFEPFFTTK----EVGKGTGLGLSISYGIVK 749

Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLYDTS---------HPHD 818
              G+         G    I  P++  +          PHD
Sbjct: 750 DYGGEIIADVPAGGGARFTIRLPVWLEAGQAPAGEAFPPHD 790



 Score = 45.0 bits (105), Expect = 0.048,   Method: Composition-based stats.
 Identities = 21/249 (8%), Positives = 69/249 (27%), Gaps = 19/249 (7%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151
              + E +       G    +++G     + D   + P     + ++ +           
Sbjct: 438 DLTILECNSRPETLYGYEPVELLGRPFLSLFDEPDVAP---FEEAIRAERHIARV-RHRR 493

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGF-GIVHVNRVDNDPRALG------KRLDKKF 204
            +GT+ +         + + +  + G + F   V       +             L +  
Sbjct: 494 KDGTDFF-------AAVRTSSAAYPGAQVFLASVTDITSRLETEQQLIQASKMATLGEMS 546

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
           + +        +V +   D+  ++        ++ ++ + E  +            +   
Sbjct: 547 TSVAHELNQPMTVIQTIADLLVRRVRRGQCVDQDTLTEMAEGISRHIARATGIINHMREF 606

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
              S           + + T + +   L+  + E   +    + P ++A  +  E +   
Sbjct: 607 GRKSDRHVVAVSLGAVIRRTFELFSQQLKVRNIEVT-FDLPGDLPDVAAQANPLEQVFMN 665

Query: 325 TVDKCPIPF 333
            +       
Sbjct: 666 LLLNARDAV 674


>gi|294637606|ref|ZP_06715886.1| sensor protein GacS [Edwardsiella tarda ATCC 23685]
 gi|291089236|gb|EFE21797.1| sensor protein GacS [Edwardsiella tarda ATCC 23685]
          Length = 934

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 89/334 (26%), Positives = 150/334 (44%), Gaps = 19/334 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           LF Y +   +  P    +               L   +   +             +++ +
Sbjct: 187 LFSYRLMRDVTGPIRNMVNTVDR-----IRRGQLDSRVEGHMLGELDMLKNGINSMAMSL 241

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 242 TAYHEEMQQNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTP 301

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+  +             I+Y + I+RS N +L I+ND+LD SK+E+GK+ L  
Sbjct: 302 LNGVIGFTRQVLKTPLSAT----QIDYLHTIERSANNLLSIINDVLDFSKLEAGKLVLEH 357

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P  L E + E  +L+   A++K + +  +  N++P  +L D   ++Q+  N+L NAI F
Sbjct: 358 IPFMLRETIDEVATLLAPSAHDKGLELTLNVRNDVPEHVLGDPMRLQQVLTNLLGNAIKF 417

Query: 719 TPSGGQIIISTTHTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           T  G  I I     S      E+ ++V DTG+G++  +  +  + F Q   S   R  GT
Sbjct: 418 TEKG-NIDIRIEQRSLNTQAVELEVQVHDTGIGISERQQSQLFQAFRQADASITRRHGGT 476

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           GLGL + + +++   G     S P KG+      
Sbjct: 477 GLGLVITQKLINEMGGDIAFHSQPHKGSTFWFHI 510


>gi|332160479|ref|YP_004297056.1| hybrid sensory histidine kinase BarA [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|325664709|gb|ADZ41353.1| hybrid sensory histidine kinase BarA [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
          Length = 956

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 86/335 (25%), Positives = 146/335 (43%), Gaps = 17/335 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           LF Y +   +  P    +       ++      L   +   +             +++ +
Sbjct: 192 LFAYRLMRDVTGPIRNMVN-----AVDRIRRGQLDSRVEGHMLGELNILKNGINSMAMSL 246

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 247 AAYHEEMQQNIDQATSDLRETLEQMEIQNVELGLAKKRAQEAARIKSEFLANMSHELRTP 306

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+     Q       P   +Y   I RS N +L I+ND+LD SK+E+ K+ L  
Sbjct: 307 LNGVIGFT----RQTLKTSLTPTQTDYLQTIQRSANNLLCIINDVLDFSKLEAEKLILEH 362

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P SL  A+ E I L+   A+EK + +      ++P  ++ D   ++QI  N+L NAI F
Sbjct: 363 IPFSLRGALDEVIILLAHTAHEKGLELTLHVNKDVPEQVIGDAMRLQQIVTNLLGNAIKF 422

Query: 719 TPSGGQ---IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T  G     + +    +    +++ + DTG+G++  +  +  + F Q   S   R  GTG
Sbjct: 423 TEQGNIDILVAVRAIASQQVTLVVEIHDTGIGISESQQAQLFQAFRQADASISRRHGGTG 482

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           LGL + + +V    G     S   +G+       L
Sbjct: 483 LGLVITERLVKEMGGDISFHSQVERGSTFRFHLTL 517


>gi|309779206|ref|ZP_07673969.1| sensory box sensor histidine kinase/response regulator [Ralstonia
           sp. 5_7_47FAA]
 gi|308922010|gb|EFP67644.1| sensory box sensor histidine kinase/response regulator [Ralstonia
           sp. 5_7_47FAA]
          Length = 795

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 83/497 (16%), Positives = 166/497 (33%), Gaps = 39/497 (7%)

Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
           F +   G +   NP    +  Y+  + I     L  L      +       +        
Sbjct: 28  FALSRPGVVATWNPGGERMQGYRPDEIIGQPLAL--LYPPESRALGAPEAALHAAAQTGR 85

Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
            +        I+ +     A         +     +    +  +  D +     +     
Sbjct: 86  HVE---EGWRIRKDGTPFWA-NVAMTALRDGNNALIGFGTVISDMSDKKAAHDAVLKSER 141

Query: 453 QLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
               +++  +D  I +++ +G I S N    ++ GY   +I+   F+ F      +    
Sbjct: 142 NFRLLVQGVTDYAIFMLSTDGHITSWNAGARRIKGYTEAEIIGSHFSRFYTPEDVAAGVP 201

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEK 568
           +   + +       E        +       +II  +        ++    DI+E ++  
Sbjct: 202 F-RGLETARRDGRFEAEGWRVRCDGSRFFAHVIIDAIYEDGELVGFAKVTRDITERRRAG 260

Query: 569 NKLSHAKKIAEKES--SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
            +L   ++   +             V+H+    L  + G  E +   R G   +    E 
Sbjct: 261 EQLEQTQRALFQAQKMEALGKLTGGVAHDFNNVLQVLRGNLE-LLESRHGR--DAWSAER 317

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
            N    + +    +   LL   +    K  L    ++    +     L++  A  + I I
Sbjct: 318 LNNAIDAVDRGAKLAAQLLAFGR----KQPLAPVVINPAHQLRAMDDLLR-RALGEAIEI 372

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT--------------HT 732
            +  A  +     D    + + LN+  NA    P GG++ +  +                
Sbjct: 373 ESVVAGGLWNTAVDPHQFENVILNLAINARDAMPDGGKLTLELSNATLDDDYVMALPDVP 432

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
           + + V+L V DTG GM+   +E+A  PF     S +  GEGTGLGL +A   V  + G  
Sbjct: 433 AGQYVMLAVTDTGTGMSPEVMERAFDPFF----STKREGEGTGLGLSMAYGFVKQSGGHI 488

Query: 793 YIFSTPAKGTLIEIIFP 809
            ++S   +GT + +  P
Sbjct: 489 RLYSEVGEGTTVRVYLP 505



 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/141 (14%), Positives = 55/141 (39%), Gaps = 6/141 (4%)

Query: 454 LCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
           L    E+TSD  I  ++R G++ + N    ++ GY  ++I+ +P  +     + ++    
Sbjct: 15  LRLWAESTSDFSIFALSRPGVVATWNPGGERMQGYRPDEIIGQPLALLYPPESRALGAPE 74

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEK 568
                +    + +E+      K+       + +  L   +     +   + D+S+ K   
Sbjct: 75  AALHAAAQTGRHVEEGWRIR-KDGTPFWANVAMTALRDGNNALIGFGTVISDMSDKKAAH 133

Query: 569 NKLSHAKKIAEKESSHKSDFL 589
           + +  +++         +D+ 
Sbjct: 134 DAVLKSERNFRLLVQGVTDYA 154



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/393 (9%), Positives = 96/393 (24%), Gaps = 25/393 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + +   G +   +    +  G    ++IG  L  +              L     T   
Sbjct: 27  IFALSRPGVVATWNPGGERMQGYRPDEIIGQPLALLYPPESRALGAPEAALHAAAQTGRH 86

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
               W I         ++A   +   N    GF    ++              + ++ F 
Sbjct: 87  VEEGWRIRKDGTPFWANVAMTALRDGNNALIGFG--TVISDMSDKKAAHDAVLKSERNFR 144

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHL---RMKNKVSSLTEYYAHKDDVLKTEK--YP 260
            L +    ++          +  +          + ++        +  + +        
Sbjct: 145 LLVQGVTDYAIFMLSTDGHITSWNAGARRIKGYTEAEIIGSHFSRFYTPEDVAAGVPFRG 204

Query: 261 LLTSEESSLPEQEDFH-TINLNQYTKKQYFGTLQNN---SKESFEYLSHRNHPSLSAYFD 316
           L T+      E E +    + +++        +  +      +                +
Sbjct: 205 LETARRDGRFEAEGWRVRCDGSRFFAHVIIDAIYEDGELVGFAKVTRDITERRRAGEQLE 264

Query: 317 EGENLT-----PETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
           + +         E + K       +   N+       L L + +   D   A  L+  +D
Sbjct: 265 QTQRALFQAQKMEALGKLTGGVA-HDFNNVLQVLRGNLELLESRHGRDAWSAERLNNAID 323

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
           A       A + +   R            H ++   +          E  +     +   
Sbjct: 324 AVDRGAKLAAQLLAFGRKQPLAPVVINPAHQLRAMDDLLRRALGEAIEIESVVAGGLWNT 383

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
            ++P   +  I    +           +A  DG
Sbjct: 384 AVDPHQFENVILNLAINAR--------DAMPDG 408


>gi|148974903|ref|ZP_01811883.1| sensory box histidine kinase/response regulator [Vibrionales
           bacterium SWAT-3]
 gi|145965412|gb|EDK30661.1| sensory box histidine kinase/response regulator [Vibrionales
           bacterium SWAT-3]
          Length = 706

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 94/367 (25%), Positives = 169/367 (46%), Gaps = 15/367 (4%)

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           +L ++    A++  E  +   N    +LFG   +++      V    ++  V +    E+
Sbjct: 1   MLNSSPIAAAVVFEE-QVRYANDTAKRLFGVENKELS--SIDVVAIHDSLDVRDEIHKEL 57

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH--DISEWKQEKNKLSHA 574
                   + K  +    +       +           +      DISE K+   +L+  
Sbjct: 58  KLNGK--VVNKELVLRKSDGTRFVALVSYYLFELDGEIATLFWAFDISEMKRLNEQLAEE 115

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
           K+ A   S  KS+FLA +SHEIRTP+ AIIG S  +     G + NP    Y   + RSG
Sbjct: 116 KERANLASQAKSEFLANMSHEIRTPMNAIIGLS-YLA---IGEISNPTARTYIEKVHRSG 171

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
           + +L  +ND+LD+SKIE+G++ +   P +      + I L++  A+EK++ +  S    +
Sbjct: 172 HSLLSSINDILDLSKIEAGQLFIDNIPFNALATFKDVIDLMESKADEKQLNLSMSIDPEL 231

Query: 695 P-RILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDTGVGMTN 750
              +L D   + Q+ LN++ NAI FT  G     + I  ++     + + V DTG+G+++
Sbjct: 232 DTPLLGDPLRLFQVILNLIGNAIKFTEKGSVSLTVDIVDSNERELTMKVCVADTGIGISD 291

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             L K  + F Q   +   R  GTGLGL +++ +V+A   +  + S   +G+    +   
Sbjct: 292 DNLHKLFQAFSQADTTTTRRFGGTGLGLNISQKLVNAMGSQITVESEFGQGSEFSFVVTF 351

Query: 811 YDTSHPH 817
             T++  
Sbjct: 352 ARTTNEE 358


>gi|239926895|ref|ZP_04683848.1| PAS/PAC sensor hybrid histidine kinase [Streptomyces ghanaensis
           ATCC 14672]
 gi|291435241|ref|ZP_06574631.1| PAS/PAC sensor hybrid histidine kinase [Streptomyces ghanaensis
           ATCC 14672]
 gi|291338136|gb|EFE65092.1| PAS/PAC sensor hybrid histidine kinase [Streptomyces ghanaensis
           ATCC 14672]
          Length = 1385

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 73/255 (28%), Positives = 124/255 (48%), Gaps = 4/255 (1%)

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           +         +   +    K+ F + +SHE RTPLT I+G  E ++ Q  G   + R  E
Sbjct: 335 RSYEAQQRRAEELAELDRAKTTFFSNISHEFRTPLTLIMGPVEELRTQLAGA--DARVRE 392

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
               I R+G  +  +VN LLD S+IE+G+M   +EPV L +  ++  S+ +   ++  + 
Sbjct: 393 ELEIIHRNGLRLGKLVNSLLDFSRIEAGRMQARYEPVDLSQVTADLASVFRSAVDKAGLD 452

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
            R        ++  D    +++ LN+LSNA+ FT  G  I ++         ++ V DTG
Sbjct: 453 FRIDCPPLQEQVYVDRGMWEKVILNLLSNALKFTFDGS-IGVTVRARDE-HAVITVTDTG 510

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G++  E+ +  + F +I N++    EG+G+GL L K +V  + G     ST  +GT   
Sbjct: 511 IGVSREEMPRLFERFHRIENARSRSNEGSGIGLALVKELVGLHGGTITADSTEGEGTRFT 570

Query: 806 IIFPLYDTSHPHDCI 820
           I  P      P D +
Sbjct: 571 IRLPFGTAHLPSDAL 585



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 46/438 (10%), Positives = 113/438 (25%), Gaps = 38/438 (8%)

Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH 233
            F G  G   V               +      +  + +    +E  +            
Sbjct: 486 TFDGSIGV-TVRARDEHAVITVTDTGIGVSREEMPRLFERFHRIENARSRSNEGSGIGLA 544

Query: 234 LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293
           L  +          A   +   T     L    + LP        +           T  
Sbjct: 545 LVKELVGLHGGTITADSTEGEGTRFTIRLPFGTAHLPSDALAPAEDG------LTVSTAD 598

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTK 353
              +E+  +L         +     E          P    V               L  
Sbjct: 599 RYVQEALRWLPDEAVAETRSPVTAAEASDQAPGHTVPARLLVADDNA--DMREYLARLLH 656

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
                   +  GL+ L      + +  I  VM+   D   + A+ R    +      + +
Sbjct: 657 SAGYQVDTVKDGLAALQAVRAHAPDLVISDVMMPGLDGLGLVAALRADP-RTASVPVVLL 715

Query: 414 TFIPFEKANQFPENMPQNG--IEPEDVDTRINKRKMEIEVMQLC--------SILEATSD 463
           +    ++A+        +   ++P      + + +  +E+ +L         +++++  +
Sbjct: 716 SARAGQEASIEGLQAGADDYLVKPFAAAELLARVRANVELARLRNHQARWRTALVDSLQE 775

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE-----QNTPSVMNHYLTEILS 518
              + +  G ++  N A + + GY  +D+  +P   +        +    +    +++L+
Sbjct: 776 AFFVCDEHGAVVEINAAFTDILGYAPDDLPYQPIHPWWPDAETDPDAHRQVEEAFSQVLN 835

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIK----KLPFSSCYSLTMHDIS------EWKQEK 568
                        + ++   L +                   T  D++      + K  +
Sbjct: 836 DPKGS---YTIPVTHRDGHRLWVTATFNQAQDPDTGRKVTVGTFRDVTAEHYAIQRKSAQ 892

Query: 569 NKLSHAKKIAEKESSHKS 586
             LS     A        
Sbjct: 893 AALSMRLTQATSLPEALE 910



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/372 (11%), Positives = 96/372 (25%), Gaps = 19/372 (5%)

Query: 104 KTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQ-NTW-YGKTTLWPIEGTNLYVPI 161
            T+G      +G    +V + +  D    I  +L     TW  G        G       
Sbjct: 83  DTLGGKYPWALGRPASEVWEEIWGDIGPRIDTVLTTGEATWDEGLLLFLERSGYTEESYH 142

Query: 162 DLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSS----- 216
             +  P+   +    G     I    RV  + R    R       +   ++   S     
Sbjct: 143 TFSYSPLRDDSGAVVGMLCVVIEETERVIGERRMATLRDLGSDPSVVRTEQEVLSFAAQQ 202

Query: 217 ----VEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ 272
               +    + +     P     +   V+ L+E +    D L  +   +   E  +  E 
Sbjct: 203 LSNNLRDLPFTLTYLFEPDGSAHLA-GVTGLSEGHPAAPDTLPVDGSGVWPVEALARGES 261

Query: 273 EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP 332
                ++   +T        +  ++     L  +                   +D     
Sbjct: 262 -VLVALDGAPFTALPAGDWPEPPAQALVLPLLRQGGTPYGFLVAGLNRY--RALDDAYHG 318

Query: 333 FFVYSHGNLFYANPSFLLL-TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR 391
           F   + G+L     S      + +  +++       T   +    +      +++   + 
Sbjct: 319 FLELTAGHLAAGIASARSYEAQQRRAEELAELDRAKTTFFSNISHEFRTPLTLIMGPVEE 378

Query: 392 TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV 451
                +     ++   E    +              +  + IE   +  R     +    
Sbjct: 379 LRTQLAGADARVR---EELEIIHRNGLRLGKLVNSLLDFSRIEAGRMQARYEPVDLSQVT 435

Query: 452 MQLCSILEATSD 463
             L S+  +  D
Sbjct: 436 ADLASVFRSAVD 447



 Score = 47.3 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 26/263 (9%), Positives = 58/263 (22%), Gaps = 22/263 (8%)

Query: 90   DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTWYGKT 147
            D HG + EI+      +G     +    +         DP+    + +   +       +
Sbjct: 781  DEHGAVVEINAAFTDILGYAPDDLPYQPIHPWWPDAETDPDAHRQVEEAFSQVLNDPKGS 840

Query: 148  TLWPI---EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
               P+   +G  L+V             R+ +     G       ++             
Sbjct: 841  YTIPVTHRDGHRLWVTATFNQAQDPDTGRKVT----VGTFRDVTAEHYAIQRKSAQAALS 896

Query: 205  SHLHEIKKGHSSVEKEKYDIFSQQSPP------------PHLRMKNKVSSLTEYYAHKDD 252
              L +      ++E    ++ S                 P +          +  A + D
Sbjct: 897  MRLTQATSLPEALEGALTELKSLWRADCVLAAVSIPDQQPSVTATEAGLRWEDLPAERRD 956

Query: 253  VLKT-EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
             L       LLT  +         +    +               ++           + 
Sbjct: 957  RLTAWFDQSLLTPHDDDAGAGITINHPEGSMVVWIDLGDQRPFTGEDQLLLSLLAGQLAQ 1016

Query: 312  SAYFDEGENLTPETVDKCPIPFF 334
                    +   ET         
Sbjct: 1017 GLARAHQIDQQRETALALQRAIL 1039


>gi|237717311|ref|ZP_04547792.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|229443294|gb|EEO49085.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
          Length = 403

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 85/376 (22%), Positives = 156/376 (41%), Gaps = 31/376 (8%)

Query: 450 EVMQLC-----SILEATSDGIAIINREGIILST--NRAVSKLFGYPVEDILRKPFTVFLE 502
              +        IL+A  D + + + +  I+    + A + + G    +I        L 
Sbjct: 41  SQERFRDKYSTRILDALPDMLTVFDHDANIIELASSPATNHVEGINASNITTTNVKDILP 100

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
           +     +   + +++      T     +    +  L      I  L  +        DIS
Sbjct: 101 EEAYESVRKNMDKVILTGESSTARHDLML---DGVLHHYENRIFPL-DNKYLLCMCRDIS 156

Query: 563 EWKQEKN-------KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
           +  + +        +L  A+  AE+    KS FLA +SHEIRTPL AI+GFS++I     
Sbjct: 157 QQWEAEQTNAQQQKELKAARVKAEESDRLKSAFLANMSHEIRTPLNAIVGFSKLI----T 212

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
                    +YA  I+R+  ++L++ ND+LD+S +E+  +  +  P+ L +   +     
Sbjct: 213 FATSTEEKNQYAEIIERNSEMLLNLFNDILDLSSLEADSLKFNIRPIKLTDICLQLKQQF 272

Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS-N 734
                +  + +     +       D   + QI  N+LSNA  FTP G    I   +    
Sbjct: 273 CHK-TQNGVKLILDDVDADMYASGDWNRIIQIISNLLSNATKFTPKG---EIHFGYREKE 328

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
           + V   V+D+G+G+    +    + FG++        +GTGLGL L + +V+   G+ ++
Sbjct: 329 DFVEFYVKDSGIGIPAERVATIFRRFGKV----NDFVQGTGLGLTLCRMLVEKMGGRIWL 384

Query: 795 FSTPAKGTLIEIIFPL 810
            S   +G+      PL
Sbjct: 385 RSQEGQGSRFYFTLPL 400


>gi|83954248|ref|ZP_00962968.1| Response regulator receiver:ATP-binding
           region,ATPase-like:Histidine kinase A, N-terminal
           [Sulfitobacter sp. NAS-14.1]
 gi|83841285|gb|EAP80455.1| Response regulator receiver:ATP-binding
           region,ATPase-like:Histidine kinase A, N-terminal
           [Sulfitobacter sp. NAS-14.1]
          Length = 669

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 82/391 (20%), Positives = 147/391 (37%), Gaps = 48/391 (12%)

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
             L   ++A  +G    + +  ++  N+            I                  +
Sbjct: 283 ALLAEAIDAIDEGFIAFDDKERVMVVNQKYRDY----HPQIADLIVPGVTMGELVVNWAN 338

Query: 512 YLTEILSLDLRQTLEKITLGSTKE-EKLL--------SLRIIIKKLPFSSCYSLTMHDIS 562
               +     +Q   +  L   +   +           L++   K P          D++
Sbjct: 339 RTESLSGSKSKQAWVRERLQRFRNPGQAFLQDIGNDNWLKVTEAKTPH-GYTVGIWTDVT 397

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP- 621
             K+ +         AE     K++FL  VSHE+RTPLT I G S  +++    P     
Sbjct: 398 AEKRAQE-------AAEAADREKTEFLNNVSHELRTPLTVIFGRSSFMRHSDKMPQAQRL 450

Query: 622 -------------------RYIEYANY----IDRSGNLVLDIVNDLLDISKIESGKMNLH 658
                               Y ++       I  S   ++ +V DLLD +K+  G++ L 
Sbjct: 451 MSALTADGSGCPKSAAAAIEYQKFITDQGAGIAESSQHMIRLVEDLLDWTKVSRGQLELD 510

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718
             P  LDE        +Q  A  K + +  +       + AD   VKQI  N+++NAI F
Sbjct: 511 MAPTQLDEIARTVTQELQPAAEAKGLTLTYAGDGPAATV-ADKVRVKQILYNLITNAIKF 569

Query: 719 TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
           T  G +I +S  H+++ E++  V DTG G+   +  +  + F Q+  S   +  G GLGL
Sbjct: 570 TSEG-KIHLSMLHSTD-EIVFSVTDTGNGIAEEDASRVFQRFQQVDGSMTRQNGGLGLGL 627

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            +++ + + + G   + S    G+   +  P
Sbjct: 628 AISEQLAELHGGSLSLESKLGVGSTFSLTLP 658


>gi|312199411|ref|YP_004019472.1| GAF sensor hybrid histidine kinase [Frankia sp. EuI1c]
 gi|311230747|gb|ADP83602.1| GAF sensor hybrid histidine kinase [Frankia sp. EuI1c]
          Length = 1388

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 85/344 (24%), Positives = 153/344 (44%), Gaps = 18/344 (5%)

Query: 491  DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
            + +       +       +      +      ++ E  +     +     L +    L  
Sbjct: 772  ETIGVNVNTIVANARTDALLEESQRLAGELRARSEELQSRQEDLQRSNDELEVKADLLAQ 831

Query: 551  SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
             +      +   E +Q + +L    +     S +KS+FLA +SHE+RTPL +++  + ++
Sbjct: 832  QNHDIEVKN--REIEQARQELEERARQLALASKYKSEFLANMSHELRTPLNSLLILAGLL 889

Query: 611  KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
                 G L   + +EYA+ I  +G+ +L ++ND+LD+SK+E+GKM+LH EPV+L   V +
Sbjct: 890  ARNPKGNLT-AKQVEYAHVIHSAGSDLLQLINDILDLSKVEAGKMDLHVEPVALAAVVDD 948

Query: 671  AISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
              +       EK + ++   A ++P R+L D   + QI  N+LSNA+ FT  G ++ ++ 
Sbjct: 949  LRATFTPVTTEKGLRLKVEIAPDVPGRLLTDRHRLAQILRNLLSNAVKFTEQG-RVELTI 1007

Query: 730  -------THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
                        E V+  V DTG+G+    L++    F Q   +   R  GTGLGL + +
Sbjct: 1008 TMMAPASGRPGGEHVLFAVTDTGIGIAEENLDRIFGAFQQGDGTTSRRYGGTGLGLSICR 1067

Query: 783  AMVDANMGKFYIFSTPAKGTLIEIIFP------LYDTSHPHDCI 820
             +     G+    S    G+   +  P      L     P D +
Sbjct: 1068 EVATLLGGEIRARSVYGSGSTFTLDLPTNPPAELTSPEPPRDAV 1111


>gi|308048557|ref|YP_003912123.1| multi-sensor hybrid histidine kinase [Ferrimonas balearica DSM
           9799]
 gi|307630747|gb|ADN75049.1| multi-sensor hybrid histidine kinase [Ferrimonas balearica DSM
           9799]
          Length = 899

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 85/313 (27%), Positives = 144/313 (46%), Gaps = 12/313 (3%)

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                +       L   L+  L        +    ++  +                D+ E
Sbjct: 202 EMVRAVAKIREGKLDTRLQGDLIGELDHLKRGINAMAASLSEYHNEMQQNIDQATSDLRE 261

Query: 564 WKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
             ++      +L  AKK A + S  KS+FLA +SHE+RTPL  +IGF+  +         
Sbjct: 262 TLEQIEIQNVELDIAKKRALEASRIKSEFLANMSHELRTPLNGVIGFTRQLLKTPL---- 317

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
           +    +Y   I+RS + +L I+ND+LD SK+E+GKM L   P +L +++ E ++L+   A
Sbjct: 318 HDNQKDYLRTIERSASNLLSIINDILDFSKLEAGKMVLDNVPFALRDSLDETLTLLSGSA 377

Query: 680 NEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEV 737
            +K + +       +P  +  D+  ++Q+  N++ NAI FT  G  ++ +     S E V
Sbjct: 378 YDKGLEMVVEIDERVPDSLCGDVMRIQQVITNLMGNAIKFTDKGSVRLSLDLADESAERV 437

Query: 738 ILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
           +LR  V DTG+G+   +     + FGQ  +S   R  GTGLGL + K +V+   G+    
Sbjct: 438 LLRAEVSDTGIGIAEEQQPMLFQAFGQADSSVSRRFGGTGLGLVITKRLVNQMEGQIGFT 497

Query: 796 STPAKGTLIEIIF 808
           S   +G+      
Sbjct: 498 SHQNQGSTFWFTL 510


>gi|283851135|ref|ZP_06368419.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283573531|gb|EFC21507.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 886

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 110/633 (17%), Positives = 197/633 (31%), Gaps = 67/633 (10%)

Query: 231 PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG 290
                 K  ++ L     +   ++                  E    I L          
Sbjct: 122 AWARVRKGDLAQLRLGELYAFGLVLHLGMLACMLLLPGSHALETLGHITLPVLLIYPAAT 181

Query: 291 TLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSF 348
               +      ++       L     E E+      +   +   +     G +  ANPS 
Sbjct: 182 AALGHL-----FVVRFARNRLLRRLSESESRYQSLFENNHVVMLLIDPDTGAVMDANPSA 236

Query: 349 LLLTKYKSVDD---------IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399
                +   +          +     +   L   K   N A        +D         
Sbjct: 237 CAYYGWSREEIKKKKVHEINMMAPEAVHAALQDAKTRRNTAFHF-RHRLADGGIREVEVN 295

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMP-----------QNGIEPEDVDTRINKRKME 448
              I +     L    I      +  + +               +E   +DT +     E
Sbjct: 296 SGPILYLGRLLLYSVVIDVTDRRRAEDRLRLGEARLQSLFAITQMETSSLDTLLAHAVAE 355

Query: 449 IEV---MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
                  +L  +              G +L    A     G     +   P         
Sbjct: 356 ARRLTGSRLGRLF-------LQHEENGRLLL---AAESGDGACGAPLPGGPDASDPHGPW 405

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI-------------IIKKLPFSS 552
              +      +L     +  E     +  E   + +                        
Sbjct: 406 AEALRLRHPVVLPALTERGEESDCRQAPGEALCVPIVTNDAVAAFLVLAGKADVYDDQDI 465

Query: 553 CYSLTMHD----ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
             +  + D    +    ++   L  AK+ AE  S  KS+FLA +SHE+RTPL  I G ++
Sbjct: 466 RLASLLMDAVWRMVARTRDAGTLRAAKEAAETASRAKSEFLANMSHELRTPLNGIQGMAQ 525

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
           ++     G        EY +    S   +  ++ D+LD+S++ESGK+ L  EP  L + +
Sbjct: 526 LL----DGTDLTVEQKEYVDAALASCRRLTRLLGDILDLSRVESGKLGLVSEPFRLADLI 581

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QII 726
           +   +  +    E  +   T  A ++P  +  D   ++QI  N+  NA+ FT +G  ++ 
Sbjct: 582 ASVSAAFEPACREAGVAWITDVARDVPETLWGDEGRMRQILCNLAGNAVKFTRAGSVRLE 641

Query: 727 ISTTHTS---NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
           +            V+  V DTGVG+   +LE+  + F Q+  S   R +G GLGL + + 
Sbjct: 642 VRAGSRDAAGRGSVLFTVADTGVGIAEEDLERVFEAFHQVERSFSRRFQGAGLGLAIVRR 701

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           +V    G   + S   +GT      PL   + P
Sbjct: 702 LVGLMGGVVVLESEVGRGTECVCALPLIRPAVP 734



 Score = 41.9 bits (97), Expect = 0.40,   Method: Composition-based stats.
 Identities = 39/406 (9%), Positives = 92/406 (22%), Gaps = 41/406 (10%)

Query: 89  IDAH-GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
           ID   G + + +       G    ++   ++ ++    ++     +   L+   T     
Sbjct: 222 IDPDTGAVMDANPSACAYYGWSREEIKKKKVHEI----NMMAPEAVHAALQDAKTRRNTA 277

Query: 148 TL-WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                         +++ + PI         +     V   R   D   LG+   +    
Sbjct: 278 FHFRHRLADGGIREVEVNSGPIL-YLGRLLLYSVVIDVTDRRRAEDRLRLGEARLQSLFA 336

Query: 207 LHEI----KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
           + ++         +    +    +            +   L       D           
Sbjct: 337 ITQMETSSLDTLLAHAVAEARRLTGSRLGRLFLQHEENGRLLLAAESGDGACGAPLPGGP 396

Query: 263 TSEESSLPEQEDFH--------TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
            + +   P  E            +              +          +      L+  
Sbjct: 397 DASDPHGPWAEALRLRHPVVLPALTERGEESDCRQAPGEALCVPIVTNDAVAAFLVLAGK 456

Query: 315 FDEGENLTPETVDKCPIPFFV-----YSHGNLFYANPS----------FLLLTKYKSVDD 359
            D  ++             +         G L  A  +          FL    ++    
Sbjct: 457 ADVYDDQDIRLASLLMDAVWRMVARTRDAGTLRAAKEAAETASRAKSEFLANMSHELRTP 516

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
           +    G++ LLD   L+            S R        +  +       L +   PF 
Sbjct: 517 LNGIQGMAQLLDGTDLTVEQKEYVDAALASCRRLTRLLGDILDLSRVESGKLGLVSEPFR 576

Query: 420 KANQFPE-------NMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458
            A+              + G+       R     +  +  ++  IL
Sbjct: 577 LADLIASVSAAFEPACREAGVAWITDVARDVPETLWGDEGRMRQIL 622


>gi|148977989|ref|ZP_01814541.1| multi-sensor hybrid histidine kinase [Vibrionales bacterium SWAT-3]
 gi|145962809|gb|EDK28082.1| multi-sensor hybrid histidine kinase [Vibrionales bacterium SWAT-3]
          Length = 1224

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 73/251 (29%), Positives = 127/251 (50%), Gaps = 8/251 (3%)

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           S  +   + L+ A+  A+  +  KSDFLA +SHEIRTP+ AIIG S +            
Sbjct: 457 SALEAFAHSLAEARDEADAANQAKSDFLANMSHEIRTPMNAIIGMSYLALKTDLTKA--- 513

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
               Y + +  S + +L ++ND+LD SKIE+GK+++      L+  +    +LV L A+E
Sbjct: 514 -QRNYIHKVKLSSDTLLGLINDILDFSKIEAGKLDIENVDFHLENVLDNITNLVGLRASE 572

Query: 682 KRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ---IIISTTHTSNEEV 737
           + + +      ++P  ++ D   + QI +N+ +NA+ FT  G     I+++  H  + ++
Sbjct: 573 RGLELLIQVDRDVPTNLIGDPLRLGQILINLSNNAVKFTEKGEVKISILVAERHGDDIKL 632

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
              V D+G+GMT  + +K    F Q  +S   +  GTGLGL ++K +     G   + + 
Sbjct: 633 KFSVSDSGIGMTQEQADKLFNKFTQADSSTTRKYGGTGLGLAISKELSQLMGGDIQVSTE 692

Query: 798 PAKGTLIEIIF 808
             KG+      
Sbjct: 693 LGKGSTFSFTI 703


>gi|116624978|ref|YP_827134.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116228140|gb|ABJ86849.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 613

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 83/471 (17%), Positives = 180/471 (38%), Gaps = 41/471 (8%)

Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
           +      +       +A  L+ L  +  + + ++   + + R      A    L  +   
Sbjct: 26  AAARFLGFGP----GLAALLTALSPSLYVLEKHSQPELPVARLLGFSGAVLFCLFLV--- 78

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE-VMQLCSILEATSDGI 465
                 +         +   +        E +   + +R+ + E   QL  I+E++ D I
Sbjct: 79  -----WLLDRQGRMRVEVQRSTRLAEERLEVLSIEVAQRERDQEFAAQLRDIVESSEDAI 133

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
              +  GII S N    +LFGY  E+ + +  T+ + ++        L  I   +     
Sbjct: 134 ISKDMNGIIRSWNDGAERLFGYSKEETIGQHITLVVPESRRHEEAGILARI--GEGLPVK 191

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIAEKE 581
              T+   K+ +L+ + + I  +  +S   +       DI+E  + + +L   +K+    
Sbjct: 192 HFETVRCRKDGRLIHVSLTISPVRETSGRIVGASHIARDITERMELEEQLRQTQKL---- 247

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
                     ++H+    LT ++G +  +  +  GP  +       + I  +      +V
Sbjct: 248 -ESLGVLAGGMAHDFNNLLTGVMGNA-SLIAEELGPESSAAPR--LSEIMHASERAAQLV 303

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701
             +L  +    GK     + + + E ++    L++       + +  + A N+P +  D 
Sbjct: 304 RQMLAYA----GKGRFVMQHLDISEQIAGIAPLIRTSITP-SVQLEFNLAENLPAVECDA 358

Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EVILRVRDTGVGMTNYELEKAMK 758
             ++Q+ +N+ +NA     S G + I+T+        +V++ V+DTG GM      +   
Sbjct: 359 SQIQQLIMNLATNAGEAIESHGTVTITTSTHRTGSERQVVIEVKDTGCGMDETTRARIFD 418

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           PF         +  G GLGL     ++ ++ G   + STP +G+   +  P
Sbjct: 419 PFFTT------KFTGRGLGLAAVLGIIRSHNGSISVESTPGRGSTFTVALP 463



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/397 (9%), Positives = 94/397 (23%), Gaps = 31/397 (7%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG-KTT 148
           D +G ++  ++   +  G    + IG  +  V           I   +         +T 
Sbjct: 137 DMNGIIRSWNDGAERLFGYSKEETIGQHITLVVPESRRHEEAGILARIGEGLPVKHFETV 196

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +G  ++V + ++  P+   +    G     I        +     ++  K  S   
Sbjct: 197 RCRKDGRLIHVSLTIS--PVRETSGRIVGASH--IARDITERMELEEQLRQTQKLESLGV 252

Query: 209 EIKKGHSSVEKEKYDIFSQ----QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
                          +                     S   + + +   L  +       
Sbjct: 253 LAGGMAHDFNNLLTGVMGNASLIAEELGPESSAAPRLSEIMHASERAAQLVRQMLAYAGK 312

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
               +   +    I       +              E L     P++     + + L   
Sbjct: 313 GRFVMQHLDISEQIAGIAPLIRTSITPSVQLEFNLAENL-----PAVECDASQIQQLIMN 367

Query: 325 TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG-------GLSTLLDAPKLSD 377
                     + SHG +     +    T  +    IE+              +  P  + 
Sbjct: 368 LATNAGEA--IESHGTVTITTSTH--RTGSERQVVIEVKDTGCGMDETTRARIFDPFFTT 423

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN------MPQN 431
               + + L        + +  +         S     +P    +  P        +   
Sbjct: 424 KFTGRGLGLAAVLGIIRSHNGSISVESTPGRGSTFTVALPATAQDVEPAQPDPHLELHGA 483

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468
           G      D  + +      + +    +E  +DG+  +
Sbjct: 484 GHVLVVDDEDLVRNMARSALERCGYTVEVAADGLLAV 520


>gi|307943374|ref|ZP_07658718.1| putative sensor histidine kinase transmembrane protein [Roseibium
           sp. TrichSKD4]
 gi|307773004|gb|EFO32221.1| putative sensor histidine kinase transmembrane protein [Roseibium
           sp. TrichSKD4]
          Length = 796

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 91/400 (22%), Positives = 174/400 (43%), Gaps = 17/400 (4%)

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
            ++  +      +     +      +      +  SIL    D I   +  G ++  N A
Sbjct: 120 RDREADQEKIKRLLDRCEELEDRLWERRESDERQASILSTLGDVIIRRDTLGKVVYANAA 179

Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE-KLL 539
             ++FG      + + F++    +  +V + +                   +T E  +  
Sbjct: 180 AREIFGEKDSPKIGEAFSL----SGLAVFDDFSFNEDQQPSAAMGFGDLHLTTVEGERWF 235

Query: 540 SLRIIIKK--LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
           S      +  +         + D+++ +  + +L  A+  AE  +  KS FLA VSHEIR
Sbjct: 236 SRFDSPVRDAISQEPLVQTVLRDVTDRRIIEEELLAARHSAESSNEAKSRFLATVSHEIR 295

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TPL  I+G + ++++ R         I Y   ++ SG  +L +++++LD SK+E+GK+++
Sbjct: 296 TPLNGILGMAALLRDTRLTK----EQIAYIEALETSGETLLFLIDEVLDFSKVEAGKLDI 351

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAI 716
              P  L       + L+   A+ K + I T     +P  +  D   V+QI  N+  N +
Sbjct: 352 QTAPTRLSSLADSVVELLAPKAHAKSLEIGTRIDPRLPETVTLDATRVRQILFNLAGNGV 411

Query: 717 HFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
            FT +GG + I      N      ++++VRDTG+G  + E E+  + F Q+ +    +  
Sbjct: 412 KFTDTGG-VSIEVDGVENGSDGSLLVIQVRDTGIGFNDAEAERLFEEFEQVDHGPARKFG 470

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
           GTGLGL +A+ +     G+    +    G L E++ P+ +
Sbjct: 471 GTGLGLAIAQRLTQLMGGQIRAAAVAGGGALFEVVLPIPE 510



 Score = 38.1 bits (87), Expect = 6.0,   Method: Composition-based stats.
 Identities = 30/244 (12%), Positives = 60/244 (24%), Gaps = 22/244 (9%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLC----DVSDILHIDPNNHIGDLLKRQNTW 143
             D  G +   +    +  G      IG         V D    + +      +   +  
Sbjct: 166 RRDTLGKVVYANAAAREIFGEKDSPKIGEAFSLSGLAVFDDFSFNEDQQPSAAMGFGDLH 225

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                L  +EG   +   D    P+     +    +   ++                   
Sbjct: 226 -----LTTVEGERWFSRFD---SPVRDAISQEPLVQT--VLRDVTDRRIIEEELLAARHS 275

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
               +E K    +    +          P   +    + L +    K+ +   E      
Sbjct: 276 AESSNEAKSRFLATVSHEIR-------TPLNGILGMAALLRDTRLTKEQIAYIEALETSG 328

Query: 264 SEESSL-PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
                L  E  DF  +   +   +     L + +    E L+ + H          +   
Sbjct: 329 ETLLFLIDEVLDFSKVEAGKLDIQTAPTRLSSLADSVVELLAPKAHAKSLEIGTRIDPRL 388

Query: 323 PETV 326
           PETV
Sbjct: 389 PETV 392


>gi|237756786|ref|ZP_04585277.1| alkaline phosphatase synthesis sensor protein PhoR
           [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237691052|gb|EEP60169.1| alkaline phosphatase synthesis sensor protein PhoR
           [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 337

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 74/356 (20%), Positives = 151/356 (42%), Gaps = 36/356 (10%)

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
           L S L+   +G+ +++    IL  NR   +    P  +   K F   +  N       YL
Sbjct: 16  LISFLDYLKEGVIVVDENKNILFVNRFAQRFLNTPDYE--GKHFKEVINDN-------YL 66

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH 573
             I+S D  +  +        +     + +            + + DI+           
Sbjct: 67  YSIISHDYDKDTKLEVNI---DSSKYLVNV----YHIKGKKIIHLQDIT----------- 108

Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
                E     K DF++ VSHE++TP++ +    E I+++    + +   +++ +   + 
Sbjct: 109 ---PFEIYKQAKKDFVSNVSHELKTPISVLKSAMETIEDE----IKDSNILKFVDMAKKR 161

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693
            N +  ++NDLL ++++ES +  +  +   L + V +    +Q    +K I ++ +   N
Sbjct: 162 INQMDSLINDLLILARLESQEDLVKKKKYLLRKQVEDIFEDLQHLTKDKNIKLKNNIPKN 221

Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753
              + AD + +     N++ NAI +    G + ++   T  +   + V DTG+G+    +
Sbjct: 222 F-EVYADEQKLSIALKNLIENAIKYNVQNGIVEVN-AKTDGKYDTISVIDTGIGIPPESI 279

Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
               + F ++  S+     GTGLGL + K + +A+ GK ++ S   KG+   I  P
Sbjct: 280 PLVFERFYRVDKSRSRNIGGTGLGLSIVKHITEAHKGKVWVESQVGKGSRFYIKIP 335


>gi|295663949|ref|XP_002792527.1| DRK1 histidine kinase [Paracoccidioides brasiliensis Pb01]
 gi|226279197|gb|EEH34763.1| DRK1 histidine kinase [Paracoccidioides brasiliensis Pb01]
          Length = 1285

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 78/255 (30%), Positives = 131/255 (51%), Gaps = 12/255 (4%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           +S  +    + + A++ AE  +  KS+FLA +SHEIRTP+  IIG +++  +        
Sbjct: 684 VSNLRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDD---LK 740

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
           P   E  N +    N +L I++D+LDISKIE+ +M +   P S+  AV  A+  + + AN
Sbjct: 741 PYPREMLNVVHSLANSLLTIIDDILDISKIEANRMVIEKIPFSMRGAVFNALKTLAVKAN 800

Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI- 738
           EK + +     ++IP  +  D   ++QI LN++ NAI FT  G ++ ++   +  EE   
Sbjct: 801 EKILNLIYQVDSSIPDFVTGDPFRLRQIILNLVGNAIKFTERG-EVRVTILKSDREECRP 859

Query: 739 ------LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
                   V DTG+G+   +L+     F Q   S   +  GTGLGL ++K +V+   G  
Sbjct: 860 NEYSFEFIVSDTGIGIEEDKLDLIFDTFQQADGSTTRKFGGTGLGLSISKRLVNLMGGDV 919

Query: 793 YIFSTPAKGTLIEII 807
           ++ S   +G+     
Sbjct: 920 WVTSEFGQGSKFHFT 934


>gi|308066930|ref|YP_003868535.1| signal transduction histidine kinase [Paenibacillus polymyxa E681]
 gi|297185563|gb|ADI24138.1| sensor histidine kinase kin99 [Paenibacillus polymyxa]
 gi|305856209|gb|ADM67997.1| Signal transduction histidine kinase [Paenibacillus polymyxa E681]
          Length = 758

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 78/412 (18%), Positives = 161/412 (39%), Gaps = 31/412 (7%)

Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSD 463
           +      +      +  Q  E +            R+ +   E       L S++  T+D
Sbjct: 369 DGHFDTRLEIKGGHELAQLGERINAMAYNLGMYTRRLEQMYEENRSVKEHLESVINQTAD 428

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
            I + + E  ++  N A   L+G+  ++++ +                +  + L      
Sbjct: 429 AIHVTDEEDRVVRVNHAFEALYGWTKKELVGRKLE--FVPPQQQEEYEFQKKSLLQG-ES 485

Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAE 579
            +   +L   K+   + + +    +         +     DI+   + +  L  ++K+  
Sbjct: 486 IVSSESLRMRKDGSTVEISMSTSPILDEEGQILGFICVSRDITGRNRMEELLRRSEKLTT 545

Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639
                     A V+HEIR PLT + GF       +         +++ + +    + +  
Sbjct: 546 V-----GQLAAGVAHEIRNPLTTLRGF------LQLQQQNQVLNMKHNDIMMSELDRINL 594

Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA 699
           IV++ L ++K ++    +HF+   +   VS+ ISL+   A+   I+      +    + A
Sbjct: 595 IVSEFLILAKPQA----VHFQKKDVRYIVSDVISLLDSQAHLLGIIFNLQVTDEPALVYA 650

Query: 700 DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKP 759
           +   +KQ+ +N+L N++     GG I I       E V + +RD G G+    L K  +P
Sbjct: 651 EENQLKQVFINLLKNSMEAMSKGGIITIHLFLE-GESVKIFIRDQGTGIPAEMLSKLGEP 709

Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
           F         +  GTGLGL +++ ++ ++ G   I ST  +GT   +  P+ 
Sbjct: 710 FFT------NKETGTGLGLMVSQRIIQSHKGTLDIESTEGEGTTALVQLPIA 755



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 18/115 (15%), Positives = 39/115 (33%), Gaps = 4/115 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            D    +  ++       G    +++G +L  V      +       LL+ ++    ++ 
Sbjct: 433 TDEEDRVVRVNHAFEALYGWTKKELVGRKLEFVPPQQQEEYEFQKKSLLQGESIVSSESL 492

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
               +G+   V I ++  PI     +  GF    +       N    L +R +K 
Sbjct: 493 RMRKDGST--VEISMSTSPILDEEGQILGF--ICVSRDITGRNRMEELLRRSEKL 543


>gi|269963086|ref|ZP_06177422.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269832218|gb|EEZ86341.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 481

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 84/303 (27%), Positives = 147/303 (48%), Gaps = 14/303 (4%)

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN------ 569
           +L+    +  + I +    ++   S+        F       + DI   ++ +       
Sbjct: 44  LLTGIRSEVTQTIIILVGAQKGHFSIENKETLRRFRPLIERAVIDIETKEKLQRIVEVRT 103

Query: 570 -KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
            +L+ A++ AE+ +  KS+FLA +SHEIRTPL +++G  ++++             E  N
Sbjct: 104 SQLAKAREEAERANQSKSEFLAMMSHEIRTPLNSVLGMLDILRQSTL----TEDQSEVLN 159

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            ++RS +L+L I++D+LD+SKIESG  +L+ +   L +AV+  IS  +  A  K +    
Sbjct: 160 QMERSADLLLAIISDILDLSKIESGSFHLNEQWTDLSDAVTLIISQQKQVATAKNLSFEF 219

Query: 689 SFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747
               +   +   D   + QI  N++ NA  FT  GG I IS     + E+++ V DTG+G
Sbjct: 220 DCNLDKNKQYWIDSTRLSQILFNLIGNASKFTDFGG-IDISV-IEKDSELVISVADTGIG 277

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           +   ++      F Q  +S   R  GTGLGL + K +V+   G   + S    G+  +I 
Sbjct: 278 IPKAKVGHLFTAFHQGDSSITRRFGGTGLGLAITKHLVEMMRGTISVKSEENVGSHFKIR 337

Query: 808 FPL 810
            P+
Sbjct: 338 IPV 340


>gi|315498391|ref|YP_004087195.1| pas/pac sensor hybrid histidine kinase [Asticcacaulis excentricus
           CB 48]
 gi|315416403|gb|ADU13044.1| PAS/PAC sensor hybrid histidine kinase [Asticcacaulis excentricus
           CB 48]
          Length = 1080

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 114/780 (14%), Positives = 226/780 (28%), Gaps = 103/780 (13%)

Query: 90  DAHGYLKEISEELPKTIGNY--AFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
                   ++E      G        +     +V+D         +  + K    +  ++
Sbjct: 199 GPDHVFTYVNEAYRTIAGERDYPGHSVRQLFPEVADQGF---YELLDQVYKSGQRFNSRS 255

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSG--FRGFGIVHVNRVDNDPRALGKRLDKKFS 205
               +        +D    PI       +G    G+ +      ++  +AL   L+++ +
Sbjct: 256 FPINLSNQTETRYLDFIYQPISDEKGAVTGIFVGGYDVTDHKHAEDALKALNATLEERVT 315

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS-----------------LTEYYA 248
           H    +K  + V +             + R  N  +                  L     
Sbjct: 316 HALAERKILADVVEATEAFIHVIDTDYNWRAINHATVGEFQRLFGVTPHVGDNMLELLAG 375

Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
           H   V              S    E+F      Q   +     L     E          
Sbjct: 376 HPKAVTHVRTLWDQALAGESPVTIEEFGGDTGEQRAYEIRAAPLYGVDGEIIGAYQFAYD 435

Query: 309 PSLSAYFDEGENLTPETVD-------KCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDI 360
            +     D     T   ++           PF +    G     + ++  L  + + + I
Sbjct: 436 VTQRLEQDVLLLQTLRELEERDRLWSLSQDPFLITDSEGRWLKVSAAWTHLLGWAAEELI 495

Query: 361 EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
                 S  L+ P   +      +    +  +      RL   +         ++     
Sbjct: 496 GQ---TSHWLEHPDDHETTRA-ELRSLAAGGSTWRFENRL---RGRDGQYRTFSWTA--- 545

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA 480
                EN     +  +        R++E         L    DG+ +   +         
Sbjct: 546 ---NEENGLVYCVARDISGDIKRARELEDSRDFARLAL-GAVDGVGVWTYD--------V 593

Query: 481 VSKLFGYPVED--------------ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
            S LF Y                  + RK F   +  +  + +   + E L+      +E
Sbjct: 594 ASDLFHYDEGIASVYALDPKAGVSGVSRKLFLSNVHPDDRAALRTTMAEGLT--RHGDIE 651

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
                   +  +  +         +      +    D++  +Q + +L  ++K+      
Sbjct: 652 LEYRLIHPDGSVRWVLSRGHTYFENGQPVRRTGVGIDVTAKRQLEEQLRQSQKM-----E 706

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
                   ++H+    L  ++G  E++K +      + R   Y            ++   
Sbjct: 707 AVGQLTGGIAHDFNNMLAVVMGSLELLKRRIGSE--DVRARHYVTQGLEGAKRAANLTQR 764

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703
           LL  S+    +  L  E V+++  V     L+        I + T  A     +  D   
Sbjct: 765 LLAFSR----QQPLRPETVNVNRLVGGMSDLLAHSLGG-SIQLETVLAAGAWPVHVDPNQ 819

Query: 704 VKQIALNILSNAIHFTPSGGQIIIST--------------THTSNEEVILRVRDTGVGMT 749
           ++ + LN+  NA    P GG++ I T                 + + V++ V DTG GM 
Sbjct: 820 LENVLLNLGVNARDAMPDGGRLTIETHNAHLDSRYVAEEIGMVTGQYVLIAVTDTGCGMP 879

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
              + +A  PF          G+GTGLGL      V  + G   I+S P +GT ++I  P
Sbjct: 880 PDVIARAFDPFFTTKG----VGKGTGLGLSQVYGFVKQSNGHVRIYSEPGQGTTVKIYLP 935



 Score =  118 bits (296), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 57/529 (10%), Positives = 135/529 (25%), Gaps = 37/529 (6%)

Query: 82  TVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN 141
            +   W   A G L   ++   +       +++GM +            N +   L  Q 
Sbjct: 65  PMTLVW--GAAGSLIY-NDGYAEISAGRHPEILGMDVRKAWPEASDFNANVVRSGLSGQT 121

Query: 142 -TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSG--------FRGFGIVHVNRVDND 192
             +          G    +  D+   P+   +    G         R   +      + +
Sbjct: 122 LAYRDVQFELNRSGEPEQIWFDIDYSPVRDDSGNPVGILAIVVETTRKVLLERAATAERE 181

Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY--YAHK 250
            +A   R    F  + E      +   E Y   + +   P   ++     + +   Y   
Sbjct: 182 SQARSLRHMPGFVAILEGPDHVFTYVNEAYRTIAGERDYPGHSVRQLFPEVADQGFYELL 241

Query: 251 DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310
           D V K+ +     S   +L  Q +   ++          G +       ++   H++   
Sbjct: 242 DQVYKSGQRFNSRSFPINLSNQTETRYLDFIYQPISDEKGAVTGIFVGGYDVTDHKHAED 301

Query: 311 LSAYFDE--GENLTPETVDK--CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
                +    E +T    ++                           + +V + +   G+
Sbjct: 302 ALKALNATLEERVTHALAERKILADVVEATEAFIHVIDTDYNWRAINHATVGEFQRLFGV 361

Query: 367 S--------TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
           +         LL     +  +         +  + +           +     A      
Sbjct: 362 TPHVGDNMLELLAGHPKAVTHVRTLWDQALAGESPVTIE----EFGGDTGEQRAYEIRAA 417

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC---SILEATSDGIAIINREGIIL 475
                  E +       +          +   + +L     +   + D   I + EG  L
Sbjct: 418 PLYGVDGEIIGAYQFAYDVTQRLEQDVLLLQTLRELEERDRLWSLSQDPFLITDSEGRWL 477

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
             + A + L G+  E+++ +        +        L  + +       E    G   +
Sbjct: 478 KVSAAWTHLLGWAAEELIGQTSHWLEHPDDHETTRAELRSLAAGGSTWRFENRLRGRDGQ 537

Query: 536 EKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
            +  S          +        DIS   +   +L  ++  A      
Sbjct: 538 YRTFSWTAN----EENGLVYCVARDISGDIKRARELEDSRDFARLALGA 582



 Score = 65.0 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 36/321 (11%), Positives = 83/321 (25%), Gaps = 15/321 (4%)

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
            +  +                  G          ++         S        ++    
Sbjct: 2   PARDDARFAPRSAGGYARSLSSVGGECGRLIAEKDWSQTELGDIESWPACLKTCVSLIVA 61

Query: 327 DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
              P+     + G+L Y N  +  ++  +  + +    G+      P+ SD NA   V+ 
Sbjct: 62  SHVPMTLVWGAAGSLIY-NDGYAEISAGRHPEIL----GMDVRKAWPEASDFNAN--VVR 114

Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIP-FEKANQFPENMPQNGIEPEDVDTRINKR 445
                  +A       +  + E       I      +     +    I  E     + +R
Sbjct: 115 SGLSGQTLAYRDVQFELNRSGEPEQIWFDIDYSPVRDDSGNPVGILAIVVETTRKVLLER 174

Query: 446 KMEIEVMQLCSILEATSDGIAII-NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
               E       L      +AI+   + +    N A   + G    D           + 
Sbjct: 175 AATAERESQARSLRHMPGFVAILEGPDHVFTYVNEAYRTIAG--ERDYPGHSVRQLFPEV 232

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM----HD 560
                   L ++     R       +  + + +   L  I + +         +    +D
Sbjct: 233 ADQGFYELLDQVYKSGQRFNSRSFPINLSNQTETRYLDFIYQPISDEKGAVTGIFVGGYD 292

Query: 561 ISEWKQEKNKLSHAKKIAEKE 581
           +++ K  ++ L       E+ 
Sbjct: 293 VTDHKHAEDALKALNATLEER 313



 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 50/388 (12%), Positives = 93/388 (23%), Gaps = 25/388 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN-TWYGKT 147
            D+ G   ++S      +G  A ++IG     +      +        L     TW  + 
Sbjct: 470 TDSEGRWLKVSAAWTHLLGWAAEELIGQTSHWLEHPDDHETTRAELRSLAAGGSTWRFEN 529

Query: 148 TLWPIEG---TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            L   +G   T  +   +   L +Y   R+ SG              D   L        
Sbjct: 530 RLRGRDGQYRTFSWTANEENGL-VYCVARDISG--DIKRARELEDSRDFARLALGAVDGV 586

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
                          E         P   +   ++   L+  +      L+T     L +
Sbjct: 587 GVWTYDVASDLFHYDEGIASVYALDPKAGVSGVSRKLFLSNVHPDDRAALRTTMAEGL-T 645

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP- 323
               +  +      + +         T    + +           +     +E    +  
Sbjct: 646 RHGDIELEYRLIHPDGSVRWVLSRGHTYF-ENGQPVRRTGVGIDVTAKRQLEEQLRQSQK 704

Query: 324 -ETVDKCPIPF-------FVYSHGNLFYANPSF------LLLTKYKSVDDIEIAGGLSTL 369
            E V +                 G+L                   + ++  + A  L+  
Sbjct: 705 MEAVGQLTGGIAHDFNNMLAVVMGSLELLKRRIGSEDVRARHYVTQGLEGAKRAANLTQR 764

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE-KANQFPENM 428
           L A         + V + R         A         E  LA    P     NQ    +
Sbjct: 765 LLAFSRQQPLRPETVNVNRLVGGMSDLLAHSLGGSIQLETVLAAGAWPVHVDPNQLENVL 824

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCS 456
              G+   D      +  +E     L S
Sbjct: 825 LNLGVNARDAMPDGGRLTIETHNAHLDS 852


>gi|258516894|ref|YP_003193116.1| GAF sensor hybrid histidine kinase [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257780599|gb|ACV64493.1| GAF sensor hybrid histidine kinase [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 1155

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 75/275 (27%), Positives = 140/275 (50%), Gaps = 24/275 (8%)

Query: 563 EWKQEKNKLSHAKKIAEKESSH-------KSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
           + K++  +L +++++ E+++         KS+FLA +SHE+RTPL +++  S ++   + 
Sbjct: 435 DIKKKNEELEYSRRMIEEKARDLELSGKYKSEFLANMSHELRTPLNSLLILSRLLYENKE 494

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
             L   + +E+A  I  SG+ +L+++ND+LD+SKIE+GK++L  + + + +        +
Sbjct: 495 SNLT-EKQVEFARTIHSSGSDLLELINDILDLSKIEAGKVDLFIQDLDIADLAGSVERNL 553

Query: 676 QLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTH--- 731
           +  A EK +      + ++P I   D + ++QI  N+LSNAI FT  G  I +       
Sbjct: 554 RHMAEEKGLTFDIELSQSMPSIIRTDRQRLEQIIKNLLSNAIKFTSQGS-ICLKIGRPYS 612

Query: 732 ---------TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
                         V   V DTG+G+   +++   +PF Q   +   +  GTGLGL +++
Sbjct: 613 EAKLMRSDLDIRNTVAFTVSDTGIGIAADKMKLIFEPFQQADGTTSRQYGGTGLGLSISR 672

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFP--LYDTSH 815
            +V    G+  + S    G+   I  P  L + S 
Sbjct: 673 ELVRCLGGEIQLESREGYGSTFTIYLPEILSEQSA 707


>gi|163850345|ref|YP_001638388.1| ATPase domain-containing protein [Methylobacterium extorquens PA1]
 gi|218528903|ref|YP_002419719.1| histidine kinase [Methylobacterium chloromethanicum CM4]
 gi|240137418|ref|YP_002961889.1| putative integral membrane sensor signal transduction histidine
           kinase [Methylobacterium extorquens AM1]
 gi|254559597|ref|YP_003066692.1| integral membrane sensor signal transduction histidine kinase
           [Methylobacterium extorquens DM4]
 gi|163661950|gb|ABY29317.1| ATP-binding region ATPase domain protein [Methylobacterium
           extorquens PA1]
 gi|218521206|gb|ACK81791.1| histidine kinase [Methylobacterium chloromethanicum CM4]
 gi|240007386|gb|ACS38612.1| putative integral membrane sensor signal transduction histidine
           kinase [Methylobacterium extorquens AM1]
 gi|254266875|emb|CAX22674.1| putative integral membrane sensor signal transduction histidine
           kinase [Methylobacterium extorquens DM4]
          Length = 513

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 102/247 (41%), Positives = 153/247 (61%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E +Q K     A++ AE+ +  KS FLA +SHE+RTPL AI+GFSEV+KN+ FG    P 
Sbjct: 236 ELEQAKANSDEARRRAEEANLAKSRFLATMSHELRTPLNAILGFSEVMKNEVFGAHVAPA 295

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
           Y EYA  I  SG  +L+++N++LD+S+IE+G+ +L  E V L   V E   ++ L A  K
Sbjct: 296 YREYATDIHDSGMHLLNLINEILDLSRIEAGRYDLTEEAVQLAHTVEECRHMMTLRARSK 355

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
                +   +++PR+ AD R+++QI LN+LSNA+ FTP GG+I I    TS+    L V+
Sbjct: 356 GQTFASLIDDSLPRLWADERALRQIVLNLLSNAVKFTPPGGEITIKVGWTSSGGQYLSVK 415

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D+G G+   EL   M  FG+   + +   +G+GLGLP+ K ++D + G F + S P +GT
Sbjct: 416 DSGPGIPEDELGTVMSSFGRGSLAIKTAEQGSGLGLPIVKGLIDLHGGGFQLKSKPREGT 475

Query: 803 LIEIIFP 809
            + + FP
Sbjct: 476 EVIVTFP 482


>gi|86159056|ref|YP_465841.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85775567|gb|ABC82404.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 451

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 74/466 (15%), Positives = 171/466 (36%), Gaps = 41/466 (8%)

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLY--RSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
            AGG   L      +     +        S    +AA A +  +     +++ +  +P  
Sbjct: 6   QAGGERPLASLAGRAPAQVSRWWRGRTAWSPGRIVAAYALVSLLWIAFSDAVLVRLVPDP 65

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRK-----MEIEVMQLCSILEATSDGIAIINREGII 474
                 + +             +   +     +     ++ + +++ +D + +++ EG I
Sbjct: 66  ALRARAQTVKGAFFVVVTSALLLELIRRGDLGLRTLGAEVRATVDSMADAVLLVDEEGRI 125

Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN------HYLTEILSLDLRQTLEKI 528
           + TNRA  +L G   ++ L  P   +  +     ++           + +L   +     
Sbjct: 126 VETNRAAVELLGVASKEDLLVPLRDWGRRFDLRYLDGSPVPYDRYAAVRALAGERIKAYD 185

Query: 529 TLGSTKEEKLLSLRIIIKKLPFSSCY---SLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
            +    +   +   +    +  +         + D++  ++                  +
Sbjct: 186 AMARRADGSEVYFSVSAAPVKGAGHRLLAVAVLRDVTAARRLDE--------------MR 231

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
            +FLA  +HE +TPL  +  ++++++ +  G  G          I R  + +  +V  LL
Sbjct: 232 EEFLATAAHEFKTPLAVVKAYAQLMQKRAPGDPG-------LTVIQRQVDRLNRLVQHLL 284

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
           D S++         +   +   V+EAI   +            + A     + AD   + 
Sbjct: 285 DTSRLRLQPGEGRRDTFDVSSLVAEAIEEARPSTPGHA---LEAEAPAPAVVHADRERIL 341

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           ++  ++L NAI F+P+GG + +    T   EV++ V D G+G+      +  + + +   
Sbjct: 342 RVLTSLLDNAIRFSPAGGPVQVRVE-THEGEVVVSVADHGLGIPPERQPRIFERYYRAHA 400

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
                  G GLGL +++ +V  + G+ +  S P +G+      PL 
Sbjct: 401 GTDQDYGGLGLGLDMSREIVTRHGGRMWFESVPGQGSTFHFSLPLA 446



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/247 (11%), Positives = 72/247 (29%), Gaps = 19/247 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID-------PNNHIG--DLLKR 139
           +D  G + E +    + +G  + + + + L D      +        P +       L  
Sbjct: 119 VDEEGRIVETNRAAVELLGVASKEDLLVPLRDWGRRFDLRYLDGSPVPYDRYAAVRALAG 178

Query: 140 QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199
           +            +G+ +Y  +  +A P+              ++         R L + 
Sbjct: 179 ERIKAYDAMARRADGSEVYFSV--SAAPVKGAGHRLL---AVAVLRDVT---AARRLDEM 230

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP--PPHLRMKNKVSSLTEYYAHKDDVLKTE 257
            ++  +      K   +V K    +  +++P  P    ++ +V  L     H  D  +  
Sbjct: 231 REEFLATAAHEFKTPLAVVKAYAQLMQKRAPGDPGLTVIQRQVDRLNRLVQHLLDTSRLR 290

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
             P     ++          I   + +   +    +  +         R    L++  D 
Sbjct: 291 LQPGEGRRDTFDVSSLVAEAIEEARPSTPGHALEAEAPAPAVVHADRERILRVLTSLLDN 350

Query: 318 GENLTPE 324
               +P 
Sbjct: 351 AIRFSPA 357



 Score = 46.2 bits (108), Expect = 0.021,   Method: Composition-based stats.
 Identities = 22/235 (9%), Positives = 49/235 (20%), Gaps = 14/235 (5%)

Query: 231 PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE---DFHTINLNQYTKKQ 287
               R    ++        +    +T   P       +L           + +       
Sbjct: 7   AGGERPLASLAGRAPAQVSRWWRGRTAWSPGRIVAAYALVSLLWIAFSDAVLVRLVPDPA 66

Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT----PETVDKCPIPFF-VYSHGNLF 342
                Q      F  ++      L    D G          TVD        V   G + 
Sbjct: 67  LRARAQTVKGAFFVVVTSALLLELIRRGDLGLRTLGAEVRATVDSMADAVLLVDEEGRIV 126

Query: 343 YANPSFLLLTKYKSVDDIE-IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401
             N + + L    S +D+           D   L  +                   A   
Sbjct: 127 ETNRAAVELLGVASKEDLLVPLRDWGRRFDLRYLDGSPVPYDRYAAVRALAGERIKAYDA 186

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
             +    + +  +             +    +  +        R+++    +  +
Sbjct: 187 MARRADGSEVYFSVSAAPV-KGAGHRLLAVAVLRDVT----AARRLDEMREEFLA 236


>gi|67531559|ref|XP_662083.1| hypothetical protein AN4479.2 [Aspergillus nidulans FGSC A4]
 gi|40741632|gb|EAA60822.1| hypothetical protein AN4479.2 [Aspergillus nidulans FGSC A4]
          Length = 1300

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 76/255 (29%), Positives = 129/255 (50%), Gaps = 12/255 (4%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           +S  +    + + A++ AE  +  KS+FLA +SHEIRTP+  IIG +++  +        
Sbjct: 700 VSNLRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDD---LK 756

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
           P   E  N +    N +L I++D+LDISKIE+ +M +   P ++   V  A+  + + AN
Sbjct: 757 PYTREMLNVVHNLANSLLTIIDDILDISKIEANRMVIESIPFTVRGTVFNALKTLAVKAN 816

Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV-- 737
           EK + +     N +P  ++ D   ++QI LN++ NAI FT  G ++ ++   +  E+   
Sbjct: 817 EKFLSLTYQVDNTVPDYVIGDPFRLRQIILNLVGNAIKFTEHG-EVKLTICKSDREQCAA 875

Query: 738 -----ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
                   V DTG+G+   +L+     F Q   S   R  GTGLGL ++K +V+   G  
Sbjct: 876 NEYAFEFSVSDTGIGIEEDKLDLIFDTFQQADGSTTRRFGGTGLGLSISKRLVNLMGGDV 935

Query: 793 YIFSTPAKGTLIEII 807
           ++ S    G+     
Sbjct: 936 WVTSEYGHGSTFHFT 950


>gi|70730939|ref|YP_260680.1| sensory box sensor histidine kinase/response regulator [Pseudomonas
           fluorescens Pf-5]
 gi|68345238|gb|AAY92844.1| sensory box sensor histidine kinase/response regulator [Pseudomonas
           fluorescens Pf-5]
          Length = 846

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 84/568 (14%), Positives = 172/568 (30%), Gaps = 68/568 (11%)

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTK 353
           N  +     L  R+  SL A  +  E L         +  + +  G   +   +      
Sbjct: 150 NERRRIALELQQRSDDSLRAQHETEERLQLALAATDAVGTWDWDIGEDRFIADAHFAQLH 209

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
                          L            + +    +  T  A   RL            +
Sbjct: 210 SVDPQQSRQLPISEYLKGVHPEDRGMVARGIKHCITHGTEYAEEYRLQ---LADGQLRWV 266

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
                   +         G   +  + +  ++ +     +L  I+ A    I  ++ E  
Sbjct: 267 FARGRCYKDHHGRPTRFLGAALDLTERKQMEQALRQSQTELQLIINAMPVLIGYVDHEER 326

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
               N A    +G   +++  K     +     +     +   L+               
Sbjct: 327 FRLNNSAYLDWYGLTPQELYGKSIREVVGDEIYATRAENIKAALAGK---PCSFEANSPH 383

Query: 534 KEEKLLSLRI----IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
           ++ +     +            + + + + D +E +Q +  L +  +  E+  + +++ L
Sbjct: 384 RDGRPRHALMKYLPRYGADGAINGFYIFVIDETERRQTEEALRNLNETLEERVNQRTEAL 443

Query: 590 A----------------------------------RVSHEIRTPLTAIIGFSEVIKNQRF 615
           A                                   ++H+    LT IIG  + +  +  
Sbjct: 444 ATANQRLQNEMFERERAEDALRHAQKMEAVGQLTGGIAHDFNNMLTGIIGSLD-LMQRYI 502

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
                     +      S      + + LL  S+    + +L  +P+  ++ V     L 
Sbjct: 503 DNGRGAEIGRFTEAAMSSAKRAASLTHRLLAFSR----RQSLDRQPLDPNQLVRSLQELF 558

Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT----- 730
                 + I ++   A+ +  +  D   ++   LN++ NA    P GG+++I T      
Sbjct: 559 NHT-KGEHIELQMQLADGVWPVNTDASQLENALLNLVINARDAMPDGGRLLIETANSYLD 617

Query: 731 ---------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
                      + + V+L V D G GM+   L KA  PF          G+GTGLGL + 
Sbjct: 618 GSDISTLEPVKAGDYVMLGVSDNGAGMSPRILAKAFDPFFTTKP----IGQGTGLGLSMI 673

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
                 + G   I S P +GT + +  P
Sbjct: 674 YGFAQQSGGHVTISSEPDQGTCVRLYLP 701



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 86/302 (28%), Gaps = 28/302 (9%)

Query: 315 FDEGENLTPETVDKCPIPFFVYSHGNLFYA-NPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
           + +      + V   P+P  +     L    N  F LL   K          L+      
Sbjct: 30  WPQSLRTAVDIVIHSPMPMLLLWGAELTQIYNDGFALLAGNKHPSAFGHPAHLT------ 83

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS--LAMTFIPFEKANQFPENMPQN 431
                +   P+     +      S +  ++Q    +   L +        N+  +     
Sbjct: 84  WPELMDFTDPIYRAVLNGQVRTFSEQRFSLQRTNGSEYDLWLDLTYSPIRNERGDVAGIL 143

Query: 432 GIEPEDVDTRINKRKMEIE-----------VMQLCSILEATSDGIAIINRE-GIILSTNR 479
               E  + R    +++               +L   L A +D +   + + G       
Sbjct: 144 VTAIETNERRRIALELQQRSDDSLRAQHETEERLQLAL-AATDAVGTWDWDIGEDRFIAD 202

Query: 480 A-VSKLFGYPVEDILRKPFTVFL---EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
           A  ++L     +   + P + +L         ++   +   ++       E     +  +
Sbjct: 203 AHFAQLHSVDPQQSRQLPISEYLKGVHPEDRGMVARGIKHCITHGTEYAEEYRLQLADGQ 262

Query: 536 EKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
            + +  R    K        +     D++E KQ +  L  ++   +   +     +  V 
Sbjct: 263 LRWVFARGRCYKDHHGRPTRFLGAALDLTERKQMEQALRQSQTELQLIINAMPVLIGYVD 322

Query: 594 HE 595
           HE
Sbjct: 323 HE 324



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/246 (10%), Positives = 67/246 (27%), Gaps = 12/246 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVS-DILHIDPNNHIGDLLKRQNTWYGKT 147
           +D     +  +       G    ++ G  + +V  D ++     +I   L        + 
Sbjct: 321 VDHEERFRLNNSAYLDWYGLTPQELYGKSIREVVGDEIYATRAENIKAALA-GKPCSFEA 379

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL-----DK 202
                +G   +    +  LP Y  +   +GF  F I              + L     ++
Sbjct: 380 NSPHRDGRPRHAL--MKYLPRYGADGAINGFYIFVI--DETERRQTEEALRNLNETLEER 435

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
                  +   +  ++ E ++    +    H +    V  LT   AH  + + T     L
Sbjct: 436 VNQRTEALATANQRLQNEMFERERAEDALRHAQKMEAVGQLTGGIAHDFNNMLTGIIGSL 495

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
              +  + +      I               + +     +   ++        ++     
Sbjct: 496 DLMQRYI-DNGRGAEIGRFTEAAMSSAKRAASLTHRLLAFSRRQSLDRQPLDPNQLVRSL 554

Query: 323 PETVDK 328
            E  + 
Sbjct: 555 QELFNH 560


>gi|262381341|ref|ZP_06074479.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262296518|gb|EEY84448.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 761

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 84/437 (19%), Positives = 161/437 (36%), Gaps = 21/437 (4%)

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
              +      +  +  +  +  +  +    + +              +            
Sbjct: 333 WVEMQRLGISKEEVPTNVHVINMPISERYKIEVFIASSLGVILLLALIGYLFYLYWREAR 392

Query: 441 RINK--RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
           R  +    ++ E   L   LE  +     + + G     N            +I      
Sbjct: 393 RRKEVLANLKQEKEHLSLALEGGNIFAWKL-QSGTFRFDNEFF-SYVNTSPREIPLDELY 450

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYS-- 555
             +  +    +   +   +                  +           L  +   Y   
Sbjct: 451 EMVHPDDRQSLRSLID-FICTGTISHHILQYRCDFNGKGYQWWEFRYGSLEDANDGYVIN 509

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
               +I   K  +  L  A++ AE+    KS FLA +SHEIRTPL AI+GFS ++ ++  
Sbjct: 510 GLCLNIQNIKDTEEVLISAREKAEESDRMKSAFLANMSHEIRTPLNAIVGFSNLMNSEEV 569

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
                     +   I+ + +L+L ++ND+LD+S++ESGKM+  F+   L+  ++E     
Sbjct: 570 LEPEEREQ--FVKLINTNSDLLLKLINDILDLSRMESGKMSFVFDRHDLNVLINEIYCTF 627

Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH---T 732
           QL   E  + +R         +  D   +KQ+  N ++NAI FT SG    I   +   T
Sbjct: 628 QLMMPE-GVELRMRVPEIPVVVAVDPYRLKQVLSNFINNAIKFTTSG---YIEVGYYFCT 683

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
             + + + V DTG+G+   + ++    F ++        +GTGLGL + + +     G+ 
Sbjct: 684 KGDCLHIYVEDTGIGIPEEKQKQVFDRFCKLD----EFAQGTGLGLAICQVIAQRFGGEI 739

Query: 793 YIFSTPAKGTLIEIIFP 809
            + S   KG+   +  P
Sbjct: 740 QLKSEYGKGSRFTLTLP 756


>gi|256840736|ref|ZP_05546244.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256738008|gb|EEU51334.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 761

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 84/437 (19%), Positives = 161/437 (36%), Gaps = 21/437 (4%)

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
              +      +  +  +  +  +  +    + +              +            
Sbjct: 333 WVEMQRLGISKEEVPTNVHVINMPISERYKIEVFIASSLGVILLLALIGYLFYLYWREAR 392

Query: 441 RINK--RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
           R  +    ++ E   L   LE  +     + + G     N            +I      
Sbjct: 393 RRKEVLANLKQEKEHLSLALEGGNIFAWKL-QSGTFRFDNEFF-SYVNTSPREIPLDELY 450

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYS-- 555
             +  +    +   +   +                  +           L  +   Y   
Sbjct: 451 EMVHPDDRQSLRSLID-FICTGTISHHILQYRCDFNGKGYQWWEFRYGSLEDANDGYVIN 509

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
               +I   K  +  L  A++ AE+    KS FLA +SHEIRTPL AI+GFS ++ ++  
Sbjct: 510 GLCLNIQNIKDTEEVLISAREKAEESDRMKSAFLANMSHEIRTPLNAIVGFSNLMNSEEV 569

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
                     +   I+ + +L+L ++ND+LD+S++ESGKM+  F+   L+  ++E     
Sbjct: 570 LEPEEREQ--FVKLINTNSDLLLKLINDILDLSRMESGKMSFVFDRHDLNVLINEIYCTF 627

Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH---T 732
           QL   E  + +R         +  D   +KQ+  N ++NAI FT SG    I   +   T
Sbjct: 628 QLMMPE-GVELRMRVPEIPVVVAVDPYRLKQVLSNFINNAIKFTTSG---YIEVGYYFCT 683

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
             + + + V DTG+G+   + ++    F ++        +GTGLGL + + +     G+ 
Sbjct: 684 KGDCLHIYVEDTGIGIPEEKQKQVFDRFCKLD----EFAQGTGLGLAICQVIAQRFGGEI 739

Query: 793 YIFSTPAKGTLIEIIFP 809
            + S   KG+   +  P
Sbjct: 740 QLKSEYGKGSRFTLTLP 756


>gi|256830706|ref|YP_003159434.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfomicrobium baculatum DSM 4028]
 gi|256579882|gb|ACU91018.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfomicrobium baculatum DSM 4028]
          Length = 586

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 76/374 (20%), Positives = 156/374 (41%), Gaps = 31/374 (8%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           R+++R++         ++     G+   + +G ++ +N   S LFG   + +        
Sbjct: 233 RLSRRQLRDTQAFASEVVRCLPLGLLSTDPDGRVVLSNGGASALFGLDRDAMSGMLLDGL 292

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL----PFSSCYSL 556
              +   +M          D     E+         K + + +   ++         Y  
Sbjct: 293 GGLDWGGIMAEL------ADKGTVPEREVTLVAGPGKRVPVNLGASRIVTSDDDFVGYLF 346

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            + D+ E ++ + ++   +++         +  A V+HEIR PL++I GF+  +  +  G
Sbjct: 347 LLRDLGEIRRLQEQVRRNERLT-----ALGNLAAGVAHEIRNPLSSIKGFATYLAGKVQG 401

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
                +  + A  + +  + +  +V++LL+ ++   G+M L  E   L + V  A+ LV+
Sbjct: 402 -----QDQDAARAMIQETDRLNRVVSELLEFARP--GEMKLRDE--DLAQVVERALRLVR 452

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN-E 735
                K + +    A  +PR+  D     Q  LN+  NA+     GG + I+     +  
Sbjct: 453 ADVTAKNVAVHFEQAGTLPRVPLDPERFTQALLNLFLNAVQAMDQGGTLRITAAQEPDAG 512

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            V LR+ DTG GM    +     P+    +S      GTGLGL +   +++A+ G+  + 
Sbjct: 513 GVALRIADTGHGMAAELVPDIFNPYFTTKSS------GTGLGLAIVHRIIEAHGGEIKVE 566

Query: 796 STPAKGTLIEIIFP 809
           S   +GT+  ++ P
Sbjct: 567 SVVGQGTVFTLMLP 580



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/248 (12%), Positives = 60/248 (24%), Gaps = 13/248 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            D  G +   +       G     M GM      D L       I   L  + T   +  
Sbjct: 260 TDPDGRVVLSNGGASALFGLDRDAMSGML----LDGLGGLDWGGIMAELADKGTVPEREV 315

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGF----RGFGIVHVNRVDNDPRALGKRLDKKF 204
              + G    VP++L A  I + + +F G+    R  G +   +           L    
Sbjct: 316 TL-VAGPGKRVPVNLGASRIVTSDDDFVGYLFLLRDLGEIRRLQEQVRRNERLTALGNLA 374

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
           + +    +   S  K      + +            +        + + + +E       
Sbjct: 375 AGVAHEIRNPLSSIKGFATYLAGK----VQGQDQDAARAMIQETDRLNRVVSELLEFARP 430

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
            E  L +++    +       +                   R       +     NL   
Sbjct: 431 GEMKLRDEDLAQVVERALRLVRADVTAKNVAVHFEQAGTLPRVPLDPERFTQALLNLFLN 490

Query: 325 TVDKCPIP 332
            V      
Sbjct: 491 AVQAMDQG 498


>gi|301309870|ref|ZP_07215809.1| putative His Kinase A (phosphoacceptor) domain protein [Bacteroides
           sp. 20_3]
 gi|300831444|gb|EFK62075.1| putative His Kinase A (phosphoacceptor) domain protein [Bacteroides
           sp. 20_3]
          Length = 622

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 104/527 (19%), Positives = 194/527 (36%), Gaps = 42/527 (7%)

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNL---FYANPSFLLLTKYKSVDDIEI 362
               S     +  + L    +D+ P+  FV    N     Y N     +T  ++ + IE 
Sbjct: 118 TRDVSSLKTENNLQELINTILDRLPLGVFVKDGDNHFNYLYWNHFMEEITGIETRE-IEG 176

Query: 363 AGGLSTLLDAPKLSDNNAIKPVML------YRSDRTCIAASARLHTIQWNRENSLAMTFI 416
                   +A   ++      + +       R      +AS     I+  +         
Sbjct: 177 HDDFEVNYNALMTAEERLETDMNVIKTGLTARFKGKVKSASGDYRDIEIAKYPISLNNGK 236

Query: 417 PFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL---EATS---DGIAIINR 470
           P   A                    + K  + I  ++ CSI    ++T    D +  +N 
Sbjct: 237 PLVLALWRDITSELATENTLRRTRILTKMALRISDIRTCSIFIDPDSTHNFKDSVVTLN- 295

Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD--LRQTLEKI 528
                  N     +        + +        +     ++  T +   +    +   ++
Sbjct: 296 -----DWNTMSEDMIEVSWGQFISR-----AHPDDQEHYHNMFTRLCRGEISEARIEARM 345

Query: 529 TLGSTKEEKLLSLRIIIKKLPFSSCYSLTM---HDISEWKQEKNKLSHAKKIAEKESSHK 585
                KE     +   + +       S+ +    +I E K ++  L  AK  AE     K
Sbjct: 346 LFPGKKEYVWREVFATVYERDEKGRPSVILGCSTNIQERKNQELSLEEAKVKAEAADKMK 405

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
           S +LA +SHEIRTPL AI GFSE++         +   + Y + I  +  L++ ++ND+L
Sbjct: 406 SKYLADMSHEIRTPLNAITGFSELMA----FADTDEERMSYYDVIKMNNQLLMQLINDIL 461

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
           DISKIE+  + + +E + + E +    +  +L      + +      +      D   + 
Sbjct: 462 DISKIEADAIKITYEQLDVSELMDTIYASAKLRVPG-GVKLVLEKGADHHMFGTDSMRLL 520

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           Q+  N+++NAI  T  G  I +  T   + ++   VRDTG+G+   +L+     F +   
Sbjct: 521 QLINNLVNNAIKNTKEGS-ITMGYTIQPDNQLRFYVRDTGIGIDKDKLKDVFGRFVK--- 576

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
                 EG GLGL + K +V    G  ++ S    G+    I P ++
Sbjct: 577 -INDYMEGIGLGLAICKGLVVKMGGSIHVTSELGVGSEFSFILPSHE 622


>gi|253564117|ref|ZP_04841574.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|251947893|gb|EES88175.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|301161586|emb|CBW21126.1| putative two-component histidine sensor kinase [Bacteroides
           fragilis 638R]
          Length = 411

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 90/377 (23%), Positives = 158/377 (41%), Gaps = 33/377 (8%)

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ------------ 503
           +IL + +    +IN + +++ TN     L G   E          L              
Sbjct: 44  TILRSMNACFILINSDLVVIRTN--YYDLSGISEEPASSGRVGDLLNCKNAVRSGGGCGA 101

Query: 504 ---NTPSVMNHYLTEILSLDLR-QTLEKITLGSTKEEK-----LLSLRIIIKKLPFSSCY 554
                  ++ H +            LE      + + +      +S+             
Sbjct: 102 HKNCENCMIRHTIENAFCHKKGFHKLEASMRLLSSDHQQIIPCDVSVSGTYLNNEGHEQM 161

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
            LT++DI+E K  +  L+  K+ A      KS F+A +SHEIRTPL AI+GFS ++    
Sbjct: 162 LLTVYDITELKNMQRLLNIEKENAVSAEKLKSAFIANMSHEIRTPLNAIVGFSGLLA--- 218

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                +     Y + +  + + +L IV D+LD+SKIESG ++ H+    +++ +     +
Sbjct: 219 -SADDDTEKKMYLDIVAENNDRLLQIVTDVLDLSKIESGSLDFHYSEFDVNDLLCGLHGI 277

Query: 675 VQLYANEK-RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
           + +   +K  I +      +   I ++   + QI  N++ NA+ FT SG +I        
Sbjct: 278 LNIRLKDKPEIKLNCEAGTDEWIIYSEQHRIVQIITNLVHNAMKFTHSG-EICFGCRPQG 336

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
            +E+   V DTG+G+   E +K    F ++         GTGLGL L++ +V    G+  
Sbjct: 337 EDEIYFYVSDTGIGIPAGEQDKIFDRFTKLD----HEVPGTGLGLTLSQTIVQNLGGEMG 392

Query: 794 IFSTPAKGTLIEIIFPL 810
           + S   KG+      PL
Sbjct: 393 VESEVTKGSTFWFTLPL 409


>gi|116625799|ref|YP_827955.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116228961|gb|ABJ87670.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 751

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 89/644 (13%), Positives = 197/644 (30%), Gaps = 61/644 (9%)

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY---AHKDDVLKT 256
            ++ +  + E       V   +            +      S   +        D++   
Sbjct: 4   NEEMYRRIVEAVPEGIWVVGGEGRTIFSNRRMAEILGVEYESMSEQTCFGCVFPDELADA 63

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS----HRNHPSLS 312
           E++   T    S P        + +          + ++       L             
Sbjct: 64  ERHFARTFGGDSRPFDFRLRRGDGSPVWVSISCMPVHDDKGTQVGLLGLFSDITERKQAE 123

Query: 313 AYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
           A   E E       D  P+  +V      L + N ++L  T      ++           
Sbjct: 124 AALRESEERFRNMADTAPVMIWVSDENKQLTFFNKTWLKFTGRTMEQELGEGWAAGV--- 180

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
                ++          +          L  ++       +M      +           
Sbjct: 181 ---HPEDIQNCYETFCSAFDAHRNFQIEL-RLRRADGEYRSMLCSGVPRFAPGGVFAGYI 236

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG-IILSTNRAVSKLFGYPVE 490
           G + +  D             +   + E  +    +++ +   +L  + +  K++G    
Sbjct: 237 GCDIDITDL--------QSEERFRELAENINQVFWMLDLDTSRVLYISPSFEKVWGCSAA 288

Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
                 +   L +   +               + +E+       +  +  +      +  
Sbjct: 289 AYQDHDW---LVETVHAEDRGRFILFRESAKAEAVEETYRIVRPDGTIRWIHDRAFLVRD 345

Query: 551 SSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
           S       +    D++  ++ + +L  A K+              V+H+    LT I G+
Sbjct: 346 SEGKPYRVAGIAEDVTAHRELEEELRQAHKM-----EAIGRLAGGVAHDFNNLLTVIGGY 400

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
           + ++ +   G             I  + +    +   LL IS+    +  +  + V+++ 
Sbjct: 401 ARMLFD---GANAQDPTRAKLEQILTASDRASVLTMQLLAISR----RHAIQPKLVNVNN 453

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726
            ++   SL++     + I I T+    +  I  D   ++Q+ +N+ +NA    P+ G+  
Sbjct: 454 LLTSMASLLR-RIIGEHITIETALDPELSCIKVDPHQIEQVVMNLAANARDAMPNAGKFR 512

Query: 727 ISTTH--------TSNEE-----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
           I T+           +       V LR+ DTG GM +   ++A +PF          G G
Sbjct: 513 IETSMALAPDKPGEDSGRSAAKCVRLRIGDTGCGMDDRTRQRAFEPFFTTKG----VGRG 568

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
           TGLGL +    V  N G  ++ S P +GT+ ++ FP        
Sbjct: 569 TGLGLSMVYGFVHQNQGTIHVSSEPGQGTIFDLCFPAQPEREAE 612



 Score =  111 bits (277), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 36/379 (9%), Positives = 97/379 (25%), Gaps = 25/379 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMR-LCDVSDILHIDPNNHIGDLLKRQNTWY 144
            W +   G     +  + + +G     M        V      D   H        ++  
Sbjct: 19  IWVVGGEGRTIFSNRRMAEILGVEYESMSEQTCFGCVFPDELADAERHFARTF-GGDSRP 77

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
               L   +G+   V + ++ +P++       G  G  +           A  +  +++F
Sbjct: 78  FDFRLRRGDGSP--VWVSISCMPVHDDKGTQVGLLG--LFSDITERKQAEAALRESEERF 133

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSP---PPHLRMKNKVSSLTEYYAHKDDVLK-TEKYP 260
            ++ +       V  E   +              M+ ++        H +D+    E + 
Sbjct: 134 RNMADTAPVMIWVSDENKQLTFFNKTWLKFTGRTMEQELGEGWAAGVHPEDIQNCYETFC 193

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
                  +   +      +    +                 Y+      +      + E 
Sbjct: 194 SAFDAHRNFQIELRLRRADGEYRSMLCSGVPRFAPGGVFAGYIGCDIDITDL----QSEE 249

Query: 321 LTPETVDKCPIPFFVYSHG--NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
              E  +     F++       + Y +PSF  +    +                  +   
Sbjct: 250 RFRELAENINQVFWMLDLDTSRVLYISPSFEKVWGCSAAA------YQDHDWLVETVHAE 303

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
           +  + ++   S +           I         +    F   +   +     GI  +  
Sbjct: 304 DRGRFILFRESAKAEAVEETY--RIVRPDGTIRWIHDRAFLVRDSEGKPYRVAGIAEDVT 361

Query: 439 DTRINKRKMEIEVMQLCSI 457
             R  + ++  +  ++ +I
Sbjct: 362 AHRELEEELR-QAHKMEAI 379


>gi|153829186|ref|ZP_01981853.1| sensor protein TorS [Vibrio cholerae 623-39]
 gi|148875299|gb|EDL73434.1| sensor protein TorS [Vibrio cholerae 623-39]
          Length = 984

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 71/238 (29%), Positives = 117/238 (49%), Gaps = 8/238 (3%)

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
           ++ AE+ S  KS FLA +SHEIRTP+  ++G + ++++             Y   I+RSG
Sbjct: 460 RQQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLQDTTLTAT----QQHYVQVINRSG 515

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
             +L I+ND+LD SKIE+G + +H     L   V E   L+Q  A EK I +      ++
Sbjct: 516 RSLLAILNDVLDYSKIEAGHLEIHHTHFDLYRLVRETHELMQSRAREKAITLTYHIDEDV 575

Query: 695 PRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-VILRVRDTGVGMTNYE 752
            +    D   + Q+  N++ N I FT  G ++ I      + + +   V D+G+G+   E
Sbjct: 576 TQYWQGDEIRIGQVLNNLVGNGIKFTEQG-EVRIRVRLAPDGQGIRFAVEDSGIGIAEEE 634

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
                  F Q    +  +  GTGLGL +++ +V A  G+  + S   +G+      PL
Sbjct: 635 QATLFDAFTQADAGR-RKLGGTGLGLAISRKLVQAMGGELQLASQLGQGSCFWFTLPL 691


>gi|330859215|emb|CBX69566.1| signal transduction histidine-protein kinase barA [Yersinia
           enterocolitica W22703]
          Length = 976

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 86/335 (25%), Positives = 146/335 (43%), Gaps = 17/335 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           LF Y +   +  P    +       ++      L   +   +             +++ +
Sbjct: 192 LFAYRLMRDVTGPIRNMVN-----AVDRIRRGQLDSRVEGHMLGELNILKNGINSMAMSL 246

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 247 AAYHEEMQQNIDQATSDLRETLEQMEIQNVELGLAKKRAQEAARIKSEFLANMSHELRTP 306

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+     Q       P   +Y   I RS N +L I+ND+LD SK+E+ K+ L  
Sbjct: 307 LNGVIGFT----RQTLKTSLTPTQTDYLQTIQRSANNLLCIINDVLDFSKLEAEKLILEH 362

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P SL  A+ E I L+   A+EK + +      ++P  ++ D   ++QI  N+L NAI F
Sbjct: 363 IPFSLRGALDEVIILLAHTAHEKGLELTLHVNKDVPEQVIGDAMRLQQIVTNLLGNAIKF 422

Query: 719 TPSGGQ---IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T  G     + +    +    +++ + DTG+G++  +  +  + F Q   S   R  GTG
Sbjct: 423 TEQGNIDILVAVRAIASQQVTLVVEIHDTGIGISESQQAQLFQAFRQADASISRRHGGTG 482

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           LGL + + +V    G     S   +G+       L
Sbjct: 483 LGLVITERLVKEMGGDISFHSQVERGSTFRFHLTL 517


>gi|312110945|ref|YP_003989261.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. Y4.1MC1]
 gi|311216046|gb|ADP74650.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. Y4.1MC1]
          Length = 456

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 57/227 (25%), Positives = 109/227 (48%), Gaps = 5/227 (2%)

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
             +++FLA +SHE+RTPLT + G++++ +    G         Y + I      +  +V 
Sbjct: 233 KERNEFLASISHELRTPLTYVKGYADIARRSNMG---EEERNRYLSIIYEEAEHMQKLVK 289

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702
           DL +++K++     +H E  +L     +    +Q     K++ +      +I  +  D +
Sbjct: 290 DLFELAKMDQHSFQIHKELTNLCSFFKKLHDKMQPAFQAKKMSLVYYCDGSI-TVHIDQK 348

Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
             +Q+ +N+L NA+ ++  G  + I      +  +++ V D G G+   +L    + F +
Sbjct: 349 RFEQVMMNLLDNALKYSDQGSIVSIDVRKEKH-HIVIIVSDEGRGIPKEDLPHIFERFYR 407

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +  S+     GTGLGL + K +V+A+ G  Y  S   KGT + I  P
Sbjct: 408 VDKSRSRTSGGTGLGLAIVKEIVEAHGGAIYAASEYGKGTNMIITLP 454


>gi|254701787|ref|ZP_05163615.1| PAS domain-containing protein [Brucella suis bv. 5 str. 513]
          Length = 898

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 99/626 (15%), Positives = 208/626 (33%), Gaps = 51/626 (8%)

Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271
           +G      + Y   +  +    +R  ++V +     +     L       L+++E     
Sbjct: 145 RGQIVYANQAYARMTGATDADGIRPLDQVLASEPAASDAIYRLTNAVRDGLSAQEEVRIS 204

Query: 272 QEDFHTINLNQY--TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE-----NLTPE 324
                  N +      +     L+  ++     ++ +         ++            
Sbjct: 205 GGLSRGANGSLAPVWYRIKARALEGGAEFKGPLVAWQVADISEERAEQERFFQELQEAIN 264

Query: 325 TVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
            +D  P  FF     G + Y N +               +  L+ ++    ++       
Sbjct: 265 HLDHAPAGFFSANPAGRIIYLNATLAEWLGVDLTQYTPGSLTLNDIVAGSGMA------L 318

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
           +   +++      +     +      SLA+ F    +  +         I  +  +   +
Sbjct: 319 IKAVKAEPGTSRNTVIDLDLIKRNGQSLAVRFYHRVQTARDGMPGTTRTIVLDRAEGDDS 378

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG--YPVEDILRKPFTVFL 501
                   ++      +    IA ++ EG  L TN     +F      + I R+     +
Sbjct: 379 SVAQRSAEVRFTRFFNSAPMAIAAVDAEGHTLRTNARFLDIFSGVVDRDAIDRRVKLENV 438

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF----SSCYSLT 557
                    +                 T+    EE+ +   +                ++
Sbjct: 439 VHERDRETFNKALAAAFAGQASISPVDTVLPGNEERHIRFYMSPVTDLGGEAAEEAAVIS 498

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
             + +E K  +N+++ ++K+              ++H+    LTAII  S+++       
Sbjct: 499 AVETTEQKALENQMAQSQKM-----QAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNH--R 551

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
             +P + +  N I ++ N    +V  LL  S+    +  L  E + L + +++ + ++  
Sbjct: 552 ASDPSFPDIMN-IKQNANRAASLVRQLLAFSR----RQTLRPEVLDLTDVLAD-LRMLLA 605

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT------- 730
               K I ++     ++  + ADL   +Q+A+N+  NA    P GGQI + T        
Sbjct: 606 RLVGKDIELKIDHGRDLWPVKADLGQFEQVAVNLAVNARDAMPEGGQITLRTRNIPAADA 665

Query: 731 -------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
                      + V+  V DTG G+    LEK  +PF          G+GTGLGL +   
Sbjct: 666 AKLHYRDLPEADYVVFEVEDTGTGIPADVLEKIFEPFFTTK----EVGKGTGLGLSMVYG 721

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFP 809
           ++    G  Y  S   KGT  +I  P
Sbjct: 722 IIKQTGGFIYCDSEVGKGTTFKIFLP 747



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/238 (11%), Positives = 66/238 (27%), Gaps = 7/238 (2%)

Query: 319 ENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
           ++L    +D  P    +    G + YAN ++  +T     D I     +  L   P  SD
Sbjct: 125 QDLAHSFMDTQPEGTVISDPRGQIVYANQAYARMTGATDADGIRPLDQV--LASEPAASD 182

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
                   +                 +    +   + +    +A +         +  + 
Sbjct: 183 AIYRLTNAVRDGLSAQEEVRISGGLSRGANGSLAPVWYRIKARALEGGAEFKGPLVAWQV 242

Query: 438 VDTRINKRKMEIEVMQLC-SI--LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
            D    + + E    +L  +I  L+    G    N  G I+  N  +++  G  +     
Sbjct: 243 ADISEERAEQERFFQELQEAINHLDHAPAGFFSANPAGRIIYLNATLAEWLGVDLTQYTP 302

Query: 495 KPFT-VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
              T   +   +   +   +           ++   +    +   +     ++     
Sbjct: 303 GSLTLNDIVAGSGMALIKAVKAEPGTSRNTVIDLDLIKRNGQSLAVRFYHRVQTARDG 360



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 49/420 (11%), Positives = 103/420 (24%), Gaps = 38/420 (9%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD--ILHIDPNNHIGDLLKRQNTWYGKT 147
           D  G +   ++   +  G      I   L  V        D    + + ++   +   + 
Sbjct: 143 DPRGQIVYANQAYARMTGATDADGI-RPLDQVLASEPAASDAIYRLTNAVRDGLSAQEEV 201

Query: 148 TL-----WPIEGTNLYVPIDLAALPIYSRNREFSG-FRGFGIVHVNRVDNDPRALGKRLD 201
            +         G+   V   + A  +     EF G    + +  ++    +     + L 
Sbjct: 202 RISGGLSRGANGSLAPVWYRIKARALEGGA-EFKGPLVAWQVADISEERAEQERFFQELQ 260

Query: 202 KKFSHLHEIKKGHSSVEKEK---YDIFSQQSPPPHLRMKNKVSSLTEYYAHKD---DVLK 255
           +  +HL     G  S        Y   +          +    SLT           ++K
Sbjct: 261 EAINHLDHAPAGFFSANPAGRIIYLNATLAEWLGVDLTQYTPGSLTLNDIVAGSGMALIK 320

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN--NSKESFEYLSHRNHPSLSA 313
             K    TS  + +                     T ++          L        S 
Sbjct: 321 AVKAEPGTSRNTVIDLDLIKRNGQSLAVRFYHRVQTARDGMPGTTRTIVLDRAEGDDSSV 380

Query: 314 YFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLT-KYKSVDDIEIAGGLSTLLD 371
                E       +  P+    V + G+    N  FL +       D I+    L  +  
Sbjct: 381 AQRSAEVRFTRFFNSAPMAIAAVDAEGHTLRTNARFLDIFSGVVDRDAIDRRVKLENV-V 439

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
             +  +         +    +       L     N E  +     P              
Sbjct: 440 HERDRETFNKALAAAFAGQASISPVDTVL---PGNEERHIRFYMSPVTDLGGEAAEEAAV 496

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSI----------LEATSDGIAIINREGIILSTNRAV 481
               E  + +  + +M  +  ++ ++                 I + +    +L TN   
Sbjct: 497 ISAVETTEQKALENQM-AQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSD---LLLTNHRA 552



 Score = 48.5 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 45/134 (33%), Gaps = 12/134 (8%)

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY-LT 514
           S ++   +G  I +  G I+  N+A +++ G    D   +P    L     +    Y LT
Sbjct: 130 SFMDTQPEGTVISDPRGQIVYANQAYARMTGATDAD-GIRPLDQVLASEPAASDAIYRLT 188

Query: 515 EILSLDLRQTLEKITLG---STKEEKLLSLRIIIKKLPFSSC-------YSLTMHDISEW 564
             +   L    E    G         L  +   IK               +  + DISE 
Sbjct: 189 NAVRDGLSAQEEVRISGGLSRGANGSLAPVWYRIKARALEGGAEFKGPLVAWQVADISEE 248

Query: 565 KQEKNKLSHAKKIA 578
           + E+ +     + A
Sbjct: 249 RAEQERFFQELQEA 262


>gi|238750558|ref|ZP_04612058.1| Signal transduction histidine-protein kinase barA [Yersinia rohdei
           ATCC 43380]
 gi|238711206|gb|EEQ03424.1| Signal transduction histidine-protein kinase barA [Yersinia rohdei
           ATCC 43380]
          Length = 891

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 83/335 (24%), Positives = 145/335 (43%), Gaps = 17/335 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           LF Y +   +  P    +       ++      L   +   +             +++ +
Sbjct: 163 LFAYRLMRDVTGPIRNMVN-----AVDRIRRGQLDSRVEGHMLGELNILKNGINSMAMSL 217

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 218 AAYHEEMQQNIDQATSDLRETLEQMEIQNVELGLAKKRAQEAARIKSEFLANMSHELRTP 277

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+         P       +Y   I RS N +L I+ND+LD SK+E+ K+ L  
Sbjct: 278 LNGVIGFTRQTLKTSLTPP----QTDYLQTIQRSANNLLCIINDVLDFSKLEAEKLILEH 333

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P  L  A+ E + L+   A+EK + +      ++P  ++ D   ++QI  N+L NAI F
Sbjct: 334 IPFPLRGALDEVVILLAHTAHEKGLELTLHVNQDVPEQVIGDAMRLQQIITNLLGNAIKF 393

Query: 719 TPSGGQ---IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T  G     + +         +++ + DTG+G++  +  +  + F Q   S   R  GTG
Sbjct: 394 TEQGNIDILVAVQAKTAEQVTLVVEIHDTGIGISESQQTQLFQAFRQADASISRRHGGTG 453

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           LGL + + +V    G    +S   +G+  +    L
Sbjct: 454 LGLVITERLVKEMGGDISFYSQVNRGSTFKFHLTL 488


>gi|162456369|ref|YP_001618736.1| two-component sensor kinase [Sorangium cellulosum 'So ce 56']
 gi|161166951|emb|CAN98256.1| two-component sensor kinase [Sorangium cellulosum 'So ce 56']
          Length = 846

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 82/660 (12%), Positives = 212/660 (32%), Gaps = 76/660 (11%)

Query: 183 IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSS 242
           +    R  +         +++F  + +       +   +  +              +  +
Sbjct: 230 VAQELRRASHLERALLEREERFRAIFDGALQFIGLLSPEGIVLENNRAALEFCRATEAET 289

Query: 243 LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTI----NLNQYTKKQYFGTLQNNSKE 298
           L   +          +  +  +   +   +     I       +         + ++   
Sbjct: 290 LGRPFWELTGWSPEHRERVRAAVAEAAAGRLVRDEICVNGATGRRFIDFSIKPITDDRGR 349

Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPE----TVDKCPIPFFVY-SHGNLFYANPSFLLLTK 353
               L   +  +     ++    + E    T +  PI   +    G     N  +  +  
Sbjct: 350 VVMLLPEGHDITERRQMEQSLRESEEDFRLTFENAPIGMAIVGLGGGFIRVNHVYCEIVG 409

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML--YRSDRTCIAASARLHTIQWNRENSL 411
           Y + +       LS L        ++    V L                  I  N     
Sbjct: 410 YAADE-------LSRLRFQDITHPDDVDTDVGLVERLRSGEIPRYQLAKRYIHKNGTTIH 462

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINK-------RKMEIEVMQLCSILEATSDG 464
            +        ++  E +       +    +  +        +++ E   L ++ ++    
Sbjct: 463 VVLHTSVV-RDEKGEPLHYIAQVEDVTARKQAEEERERLLAQLDAERRTLRTVFDSAPVP 521

Query: 465 IAIINREG--IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522
           + +++R G   ++  N     L G    +   +        +  ++    L    ++   
Sbjct: 522 LLLVDRSGAERLI-ANPHARDLTG--GAEEREQCVGRVRRPDGTALPLDELPSSRAMRGE 578

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIA 578
             L +  L +  +    +  I    +  S+       +   DIS  K             
Sbjct: 579 TILGEELLVAKADGSSGTFLIAAAPIHDSAGEITGAIVAGEDISALK------------- 625

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
            + +  + ++ + ++H++R P+T I+  +  +  +       P+  + A +I  S   + 
Sbjct: 626 -ELARMREEWTSIIAHDLRQPITTILLKASRLATE-------PQSSDRAQHIRASAMQLN 677

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
            +++DLLD+S++ES +++L    V L   +   +          R+ +     + +P +L
Sbjct: 678 RMIDDLLDVSRLESHRLDLRHAEVDLPALIRATVERTADATRGHRVDVEVQ--DGVPPLL 735

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
           AD   ++Q+  N+LSNA  +   G  I I+     + EV + V + G G+   ++ +   
Sbjct: 736 ADPGRLEQVLTNLLSNAAKYGAPGTPIRIAVERR-SGEVSVAVENEGKGIAPDDVSRLFT 794

Query: 759 PFGQIPNSQQIR--------GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            + +   ++                    + + +V+A+ G+ +  + P K T  +   PL
Sbjct: 795 RYYRTREAKAGGAAGLGLGLY--------IVRGLVEAHGGRIWAENAPGK-TTFQFTLPL 845



 Score = 74.3 bits (181), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 37/364 (10%), Positives = 92/364 (25%), Gaps = 18/364 (4%)

Query: 220 EKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTIN 279
                 S +     +    +V+            +      L+      +    D   + 
Sbjct: 23  PVGATLSAEEIEASIGRDEEVACAASLSPCAGREVYPSPGELMARAAPRIARVADLDELA 82

Query: 280 LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG 339
                +    G        + E        S      +            P+        
Sbjct: 83  ALLLDQAMELGARAAYLLLTSEDTGELGLHSHRHVPADIRLCLARVARGAPL-------- 134

Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA--- 396
            L     S   +        ++    ++  L A   + +    P+ +       ++    
Sbjct: 135 -LDEWAASSGRVQVMSDARSLDPDPSMTRELCARTGAQSAVSMPLRVRDRCLGVLSFCLP 193

Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
                        +            +       + +  E       +R +     +  +
Sbjct: 194 RPYPRACVDLGALAALFAIGLDSALARGGSARTSDRVAQELRRASHLERALLEREERFRA 253

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           I +     I +++ EGI+L  NRA  +       + L +PF   L   +P         +
Sbjct: 254 IFDGALQFIGLLSPEGIVLENNRAALEFCRATEAETLGRPF-WELTGWSPEHRERVRAAV 312

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM----HDISEWKQEKNKLS 572
                 + +      +    +   +   IK +       + +    HDI+E +Q +  L 
Sbjct: 313 AEAAAGRLVRDEICVNGATGRRF-IDFSIKPITDDRGRVVMLLPEGHDITERRQMEQSLR 371

Query: 573 HAKK 576
            +++
Sbjct: 372 ESEE 375



 Score = 73.5 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 56/507 (11%), Positives = 118/507 (23%), Gaps = 61/507 (12%)

Query: 82  TVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV--SDILHIDPNNHIGDLLKR 139
            ++F   +   G + E +    +       + +G    ++      H +           
Sbjct: 258 ALQFIGLLSPEGIVLENNRAALEFCRATEAETLGRPFWELTGWSPEHRERVRAAVAEAAA 317

Query: 140 QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199
                 +     + G      ID +  PI             G  H            + 
Sbjct: 318 GRLVRDE---ICVNGATGRRFIDFSIKPITDDRGRVVMLLPEG--HDITERRQMEQSLRE 372

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSSLTEYYAHKDDVLKT- 256
            ++ F    E      ++                      +++S L        D + T 
Sbjct: 373 SEEDFRLTFENAPIGMAIVGLGGGFIRVNHVYCEIVGYAADELSRLRFQDITHPDDVDTD 432

Query: 257 --EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR-------- 306
                 L + E       + +   N        +   +++   E   Y++          
Sbjct: 433 VGLVERLRSGEIPRYQLAKRYIHKNGTTIHVVLHTSVVRDEKGEPLHYIAQVEDVTARKQ 492

Query: 307 ---NHPSLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVDDIE 361
                  L A  D          D  P+P  +          ANP    LT     ++ E
Sbjct: 493 AEEERERLLAQLDAERRTLRTVFDSAPVPLLLVDRSGAERLIANPHARDLTGG--AEERE 550

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
              G     D   L  +       +       I     L  +     +S           
Sbjct: 551 QCVGRVRRPDGTALPLDELPSSRAMR---GETILGEELL--VAKADGSSGTFLIAAAPIH 605

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA-TSDGIAII------------ 468
           +   E         +    +    ++     +  SI+       I  I            
Sbjct: 606 DSAGEITGAIVAGEDISALK----ELARMREEWTSIIAHDLRQPITTILLKASRLATEPQ 661

Query: 469 --NREGIILS----TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522
             +R   I +     NR +  L      +  R       E + P+++   +         
Sbjct: 662 SSDRAQHIRASAMQLNRMIDDLLDVSRLESHRLDLRHA-EVDLPALIRATVERTADATRG 720

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLP 549
             ++        ++ +  L     +L 
Sbjct: 721 HRVDVEV-----QDGVPPLLADPGRLE 742



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/274 (9%), Positives = 69/274 (25%), Gaps = 19/274 (6%)

Query: 69  DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID 128
           +SE  F        +     +   G    ++    + +G  A ++  +R  D++    +D
Sbjct: 372 ESEEDFRLTFENAPIGMA-IVGLGGGFIRVNHVYCEIVGYAADELSRLRFQDITHPDDVD 430

Query: 129 PNNHIGDLLKRQNTWYGK--TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHV 186
            +  + + L+       +         GT ++  + L    +     E   +     V  
Sbjct: 431 TDVGLVERLRSGEIPRYQLAKRYIHKNGTTIH--VVLHTSVVRDEKGEPLHY--IAQVED 486

Query: 187 NRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK--------- 237
                      +RL  +        +           +  +      +            
Sbjct: 487 VTARKQAEEERERLLAQLDAERRTLRTVFDSAPVPLLLVDRSGAERLIANPHARDLTGGA 546

Query: 238 -NKVSSLTEYYAHKDDVLKTEKYPLLTS--EESSLPEQEDFHTINLNQYTKKQYFGTLQN 294
             +   +          L  ++ P   +   E+ L E+      + +  T       + +
Sbjct: 547 EEREQCVGRVRRPDGTALPLDELPSSRAMRGETILGEELLVAKADGSSGTFLIAAAPIHD 606

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDK 328
           ++ E    +      S               +  
Sbjct: 607 SAGEITGAIVAGEDISALKELARMREEWTSIIAH 640


>gi|119498321|ref|XP_001265918.1| two-component osmosensing histidine kinase (Bos1), putative
           [Neosartorya fischeri NRRL 181]
 gi|119414082|gb|EAW24021.1| two-component osmosensing histidine kinase (Bos1), putative
           [Neosartorya fischeri NRRL 181]
          Length = 1336

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 76/255 (29%), Positives = 129/255 (50%), Gaps = 12/255 (4%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           +S  +    + + A++ AE  +  KS+FLA +SHEIRTP+  IIG +++  +        
Sbjct: 737 VSNLRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDD---LK 793

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
           P   E  N +    N +L I++D+LDISKIE+ +M +   P ++   V  A+  + + AN
Sbjct: 794 PYTREMLNVVHNLANSLLTIIDDILDISKIEANRMVIESIPFTVRGTVFNALKTLAVKAN 853

Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV-- 737
           EK + +     N +P  ++ D   ++QI LN++ NAI FT  G ++ ++   +  E+   
Sbjct: 854 EKFLSLTYQVDNTVPDYVIGDPFRLRQIILNLVGNAIKFTEHG-EVKLTIRKSDREQCAP 912

Query: 738 -----ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
                   V DTG+G+   +L+     F Q   S   R  GTGLGL ++K +V+   G  
Sbjct: 913 NEYAFEFSVSDTGIGIEEDKLDLIFDTFQQADGSTTRRFGGTGLGLSISKRLVNLMGGDV 972

Query: 793 YIFSTPAKGTLIEII 807
           ++ S    G+     
Sbjct: 973 WVTSEYGHGSTFHFT 987


>gi|332306269|ref|YP_004434120.1| integral membrane sensor hybrid histidine kinase [Glaciecola
           agarilytica 4H-3-7+YE-5]
 gi|332173598|gb|AEE22852.1| integral membrane sensor hybrid histidine kinase [Glaciecola
           agarilytica 4H-3-7+YE-5]
          Length = 573

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 74/264 (28%), Positives = 124/264 (46%), Gaps = 12/264 (4%)

Query: 561 ISEWKQEKNKLS---HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
           +++  + + +       +  A+  +  KS FLA +SHEIRTP+  +IG  E++       
Sbjct: 170 VTKQIELEIERDLAIQHELEAKAATETKSAFLANMSHEIRTPMNGVIGMIELVSQTEL-- 227

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
             N     Y     RS + +L I+ND+LD SKIE G++ + F    L++   E +     
Sbjct: 228 --NTDQKNYLATAKRSADSLLIIINDILDFSKIEVGELTIEFVEFDLEQFFEELLHDQHF 285

Query: 678 YANEKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS---TTHTS 733
           +A +K + +  S  + +   ++ D   + QI  N+LSNAI FT SGG I +     T   
Sbjct: 286 HARKKGLTLALSKGDFHHRHVVGDPYRITQIMNNLLSNAIKFTESGG-ITVHYDLVTLGD 344

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
           N ++ + ++DTG+G++   L      F Q   S   +  GTGLGL + K + +   G   
Sbjct: 345 NLQLKVEIKDTGIGVSETALPFLFDSFSQADTSTTRKFGGTGLGLSITKQLCELMNGDIS 404

Query: 794 IFSTPAKGTLIEIIFPLYDTSHPH 817
           + S   +G+       L      H
Sbjct: 405 VKSQLNQGSTFSFSVRLKPPRQTH 428


>gi|268324757|emb|CBH38345.1| conserved hypothetical protein, histidine kinase family and
           response regulator receiver family [uncultured archaeon]
          Length = 406

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 84/304 (27%), Positives = 145/304 (47%), Gaps = 6/304 (1%)

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK-KLPFSSCYSLTMHDISEWKQEK 568
                + +       + K  L   +    + + + I  +    +     + ++     E 
Sbjct: 91  EDIAVQSIHEGAMDYIPKEHLSQDRLLSTVKVALEIWKRKRAEADRERVLKELESKNVEL 150

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
            K        E+ +  KS+FL+  SHE+RTPLT +    ++I     G L N    +   
Sbjct: 151 QKAMEHMADLEEITRMKSEFLSITSHELRTPLTPMKAQLQMILEGYVGEL-NDNQKKSLE 209

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            + R+   +  +++D+LD+S+IE+G++ L F+PV+++  V EAI   +  A  K I I T
Sbjct: 210 VVLRNITKLGKLIDDILDLSRIEAGRIKLAFKPVNINSIVKEAIITQESSATSKDIEIST 269

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH---TSNEEVILRVRDTG 745
             A ++P I+ D   + Q+  N+L+NAI F+   G++II T        E V+  + D G
Sbjct: 270 KLA-DLPDIVGDPERIGQVIGNLLNNAIKFSKKSGKVIIETKCLDIEGKENVLFSITDYG 328

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G++  + +K  KPF QI  S      GTGLGL + + ++ A+ GK +I S    GT   
Sbjct: 329 IGISKADHKKLFKPFSQIDTSLGREQAGTGLGLAIVRGIIHAHRGKVWIDSESGNGTTFY 388

Query: 806 IIFP 809
              P
Sbjct: 389 FTIP 392


>gi|262280993|ref|ZP_06058776.1| sensor protein gacS [Acinetobacter calcoaceticus RUH2202]
 gi|262257893|gb|EEY76628.1| sensor protein gacS [Acinetobacter calcoaceticus RUH2202]
          Length = 935

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 77/243 (31%), Positives = 127/243 (52%), Gaps = 14/243 (5%)

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
           +  A   +  KS FLA +SHE+RTPL +I GF  ++  Q+     N     Y   I +S 
Sbjct: 280 RDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQN---LNNEQNLYLQTIRKSS 336

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
             +L ++ND+LD SKI++GK+ L   P  L+EA+ + + ++   A +K I +   +A+NI
Sbjct: 337 AHLLALINDVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKHIAMAFYYADNI 396

Query: 695 PR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDTGVGMT 749
           P+ ++ D    KQI  N++SNAI FTP G +II+      ++     +   V+D+G+G++
Sbjct: 397 PQQVIGDALRFKQILTNLISNAIKFTPDG-EIIVRVRMEHDDIGQCLLHFSVQDSGIGLS 455

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP-----AKGTLI 804
             + +K  + F Q   S   +  GTGLGL ++K +V    G+             KG+  
Sbjct: 456 GTDRKKLFESFSQGDASVTRQFGGTGLGLAISKQLVHLMHGQIGFEDNQERAPTEKGSTF 515

Query: 805 EII 807
              
Sbjct: 516 WFT 518


>gi|325972366|ref|YP_004248557.1| Hpt sensor hybrid histidine kinase [Spirochaeta sp. Buddy]
 gi|324027604|gb|ADY14363.1| Hpt sensor hybrid histidine kinase [Spirochaeta sp. Buddy]
          Length = 935

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 74/253 (29%), Positives = 128/253 (50%), Gaps = 8/253 (3%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           +S  +        A+K A++    KS FLARVSHEIRTPL  I G S +++        +
Sbjct: 294 VSRLRDAVKAKDAAQKQAQQADIEKSRFLARVSHEIRTPLNGIRGMSYLLEKTSL----D 349

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
              + Y   I  +   +  I+ND+L+ S+++  ++ L   P +LD+ +   IS+      
Sbjct: 350 ANQMRYVKTISGATQTMQSIINDILEFSRLDEDRIILENIPFALDDVLENCISIESYLIQ 409

Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEE 736
           +K +  R +  +++P+ ++ D   + QI +N+L+NA+ FT +G     + + T    +  
Sbjct: 410 QKGLHFRLNQPDDVPQHLVGDPTRLAQILINLLNNAVKFTEAGSIDLTVQVQTLAEQSCS 469

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           +   V+DTG+GM   ++E   KPF Q   S   +  G+GLGL + KA+V+   G   + S
Sbjct: 470 LSFEVKDTGIGMNEQQMENLFKPFVQANASIHRKYGGSGLGLSIVKALVEKMGGTLTVTS 529

Query: 797 TPAKGTLIEIIFP 809
              KG+      P
Sbjct: 530 EMGKGSAFTATIP 542


>gi|320334818|ref|YP_004171529.1| multi-sensor signal transduction histidine kinase [Deinococcus
           maricopensis DSM 21211]
 gi|319756107|gb|ADV67864.1| multi-sensor signal transduction histidine kinase [Deinococcus
           maricopensis DSM 21211]
          Length = 557

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 87/422 (20%), Positives = 170/422 (40%), Gaps = 26/422 (6%)

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470
             M      +  +      +   +         + + + E+ +L S +E  +D I I +R
Sbjct: 134 TLMVQAHERRLRELEAQQARAAQDRLRRANERERMRAQQEMRKLSSAVEQAADPIFIADR 193

Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530
           EG+I   N A  ++ GY  ++ + +  ++   +    V    +   L     +T     +
Sbjct: 194 EGVIEYVNPAFERVTGYARDEAIGQHASILWPEGVGQVFTQEVWPALLRG--ETYRGDVM 251

Query: 531 GSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKE----- 581
              K+  L      +  +            T  D+S+ K+ + +L       E       
Sbjct: 252 NRRKDGSLYHKEKTLTPIKDERGRITHVVSTGKDVSDRKRIEAELVALNLSLEARVESRT 311

Query: 582 ------SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
                 +     F   +SH++RTPL  I  F++++     G L   +       I  S  
Sbjct: 312 AQLEDVNRELEAFAYSISHDLRTPLRHIASFADLLSRDTQG-LLPEKATRRLTIIQESAK 370

Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695
            +  ++NDLL+ ++  +G+ +L F  V L   V E +  V+  ANE R+ I      ++P
Sbjct: 371 RMDGLINDLLEFAR--TGRQDLVFREVPLGSVVQEVMQDVE-RANEGRV-IEWDVQ-DLP 425

Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-EVILRVRDTGVGMTNYELE 754
            +  D  +++Q+ +N+++NA+ +      I ++    +   E ++ VRD GVG       
Sbjct: 426 TVYGDPAALRQVLMNLVANAVKYARDRTPIRVALWGETGAREDVVHVRDNGVGFNMAYAH 485

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           K    F ++ +      EGTG+GL   K +V  + G+ +   T  +G       P  +T+
Sbjct: 486 KLFGVFQRLHSPDS--FEGTGVGLANVKRIVARHGGRVWAEGTEGQGATFSFSLPREETT 543

Query: 815 HP 816
            P
Sbjct: 544 GP 545



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/298 (11%), Positives = 76/298 (25%), Gaps = 10/298 (3%)

Query: 42  ENPCHDSFEQSNFTDQNQ-ESVSNTNYLDSENTFV--FDPIPRTVRFTWNIDAHGYLKEI 98
           E    +   Q     Q++    +    + ++         + +     +  D  G ++ +
Sbjct: 141 ERRLRELEAQQARAAQDRLRRANERERMRAQQEMRKLSSAVEQAADPIFIADREGVIEYV 200

Query: 99  SEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPIEGTNL 157
           +    +  G    + IG     +            +   L R  T+ G       +G+  
Sbjct: 201 NPAFERVTGYARDEAIGQHASILWPEGVGQVFTQEVWPALLRGETYRGDVMNRRKDGSLY 260

Query: 158 YVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSV 217
           +    L   PI       +     G            A    L+       E +      
Sbjct: 261 HKEKTL--TPIKDERGRITHVVSTG--KDVSDRKRIEAELVALNLSLEARVESRTAQLED 316

Query: 218 EKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY--PLLTSEESSLPEQEDF 275
              + + F+             ++S  +  +     L  EK    L   +ES+       
Sbjct: 317 VNRELEAFAYSISHDLRTPLRHIASFADLLSRDTQGLLPEKATRRLTIIQESAKRMDGLI 376

Query: 276 HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF 333
           + +     T +Q     +       + +      +      E +     TV   P   
Sbjct: 377 NDLLEFARTGRQDLVFREVPLGSVVQEVMQDVERANEGRVIEWDVQDLPTVYGDPAAL 434



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 26/221 (11%), Positives = 60/221 (27%), Gaps = 18/221 (8%)

Query: 286 KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHGNLFYA 344
           ++    L+     + +    R +        +        V++   P F+    G + Y 
Sbjct: 141 ERRLRELEAQQARAAQDRLRRANERERMRAQQEMRKLSSAVEQAADPIFIADREGVIEYV 200

Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
           NP+F  +T Y   + I     +      P+       + V               +   +
Sbjct: 201 NPAFERVTGYARDEAIGQHASI----LWPEGVGQVFTQEVWPALLRGET--YRGDVMNRR 254

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
            +               ++            +  D +  + ++    + L + +E+    
Sbjct: 255 KDGSLYHKEK-TLTPIKDERGRITHVVSTGKDVSDRKRIEAELVALNLSLEARVES---- 309

Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
                R   +   NR +   F Y +   LR P         
Sbjct: 310 -----RTAQLEDVNRELEA-FAYSISHDLRTPLRHIASFAD 344


>gi|317478861|ref|ZP_07938012.1| hsp90-like protein [Bacteroides sp. 4_1_36]
 gi|316905037|gb|EFV26840.1| hsp90-like protein [Bacteroides sp. 4_1_36]
          Length = 758

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 81/341 (23%), Positives = 149/341 (43%), Gaps = 13/341 (3%)

Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530
           EG  +S +    +L  +    +L    T ++  +        +      +      +   
Sbjct: 426 EGDSVSCDSQFCELIHHRPGRLLLDEITPYIHPDDLPAFRKNI--AARHERTHHKGQYRC 483

Query: 531 GSTKEEKLLSLRIIIKKLPFSSCYSL-TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
             T E +           P  +      + +I E K  + +L  ++++AE+    K  FL
Sbjct: 484 NFTGEFQWWEFSYNTIHTPGHAPIIAGLLQNIQELKDHEQELIESRELAEQA-ELKQSFL 542

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
             +SHEIRTPL AI+GFS+++ N+      N    E+ + I+ +  L+L +V D+L++S+
Sbjct: 543 NNMSHEIRTPLNAIVGFSDMLANEP--EFSNEERQEFVDIINTNTKLLLKLVGDVLELSR 600

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709
           IESG ++  F+  S+   + +      L      +     F     ++  D   + Q+  
Sbjct: 601 IESGNLSFTFQRESVHRLLDDVYQTHSLLI-RPPLQFLKDFPPEDVQVNVDPMRLTQVLT 659

Query: 710 NILSNAIHFTPSGGQIIISTTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
           N L+NA  FT  GG I +     S   EV L V DTG+G+ + E +   + F +    + 
Sbjct: 660 NFLNNANKFT-KGGSIRLGYCCPSGMSEVHLYVEDTGIGIPHSEQKMIFERFYK----RS 714

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
              +G GLGL +   +V+   G+  + S   +G+   ++ P
Sbjct: 715 EFSQGVGLGLSICVLIVEKMGGRIELRSEEGRGSRFTVVLP 755


>gi|197658986|emb|CAR47859.1| putative signal transduction histidine kinase [Rhodococcus sp.
           PY11]
          Length = 632

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 104/515 (20%), Positives = 201/515 (39%), Gaps = 56/515 (10%)

Query: 324 ETVDKCPIPFFVYSHG-----NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
             V   P    +   G      +  AN +   LT       +    G+  L         
Sbjct: 11  AGVRTSPDRSAIVETGDPEHLRVTGANHAMTKLTGLPREALL----GIDLL--------Q 58

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
                 +  R     IA +  +          + +        N             E  
Sbjct: 59  LVGGEDLRSRLQGYEIAENGVVALCAGPGGQKIPVVIRGNLVPNPAYPTGLAVVTLRETT 118

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
                ++ +     +L  + +  +  I +   +G     N    +L      +I  +   
Sbjct: 119 QRHT-RKALRESNNRLQQVADNVTALIYLKGADGRYFFANHHFEQLVQLAPGEIYGRDDY 177

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS--- 555
               QN          ++L     Q LE        +        +   L   S      
Sbjct: 178 QVWPQNIADAYVDNDHQVLMSG--QPLEFEEPIPNPDGSTGMWLSLKFPLRDESGKVYGT 235

Query: 556 -LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                DIS+  +   +++ AK+ AE+ +  KS+FL+R+SHE+RTPL +IIGF+++++ + 
Sbjct: 236 GGISTDISDRNRVSIEIASAKEEAERANHAKSEFLSRMSHELRTPLNSIIGFTQLMQTEH 295

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
            G        E    I ++G+ +L ++N +L+ S+IESG +++   PV+  + ++ AI +
Sbjct: 296 GGND------ESLGRILQAGHHLLSLINQILEFSRIESGSVDVALSPVNACDPLAAAIDM 349

Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRS-----------VKQIALNILSNAIHFTPSG 722
           V+  A  + I +   +   I + +LA+                         A+++   G
Sbjct: 350 VRPIAAARSIDVSCDYHAAIYQHVLANSDRLQQVLLNVLLN-----------AVNYNNIG 398

Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
           G I ++T   ++  + +RV DTG GM++ ++ +   PF ++  ++    EGTGLGL L+K
Sbjct: 399 GLIRVTTRRNAD-VLRIRVEDTGHGMSHEDVSRIFVPFERLEGTRS-TVEGTGLGLALSK 456

Query: 783 AMVDANMGKFYIF-STPAKGTLIEIIFPLYDTSHP 816
            +V+A  G+  +  + P +G++  +   L D   P
Sbjct: 457 DLVEAMGGRLGVERTAPGQGSVFFVDLQLTDGGDP 491



 Score = 43.5 bits (101), Expect = 0.16,   Method: Composition-based stats.
 Identities = 15/137 (10%), Positives = 35/137 (25%), Gaps = 5/137 (3%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLLKRQNTWYGKTT 148
            A G     +    + +     ++ G     V      D   ++   +L        +  
Sbjct: 148 GADGRYFFANHHFEQLVQLAPGEIYGRDDYQVWPQNIADAYVDNDHQVLMSGQPLEFEEP 207

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           +   +G+     + L   P+   + +  G  G  I       N          ++    +
Sbjct: 208 IPNPDGSTGM-WLSLK-FPLRDESGKVYGTGG--ISTDISDRNRVSIEIASAKEEAERAN 263

Query: 209 EIKKGHSSVEKEKYDIF 225
             K    S    +    
Sbjct: 264 HAKSEFLSRMSHELRTP 280



 Score = 37.7 bits (86), Expect = 9.0,   Method: Composition-based stats.
 Identities = 20/249 (8%), Positives = 61/249 (24%), Gaps = 16/249 (6%)

Query: 90  DAHG-YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           D     +   +  + K  G     ++G+ L  +     +         L+          
Sbjct: 27  DPEHLRVTGANHAMTKLTGLPREALLGIDLLQLVGGEDL------RSRLQGYEIAENGVV 80

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                     +P+ +    + +    +        +      +  +AL +  + +   + 
Sbjct: 81  ALCAGPGGQKIPVVIRGNLVPNP--AYPTGLAVVTLRETTQRHTRKAL-RESNNRLQQVA 137

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLKT---EKYPLLT 263
           +       ++      F        L      ++    +Y     ++        + +L 
Sbjct: 138 DNVTALIYLKGADGRYFFANHHFEQLVQLAPGEIYGRDDYQVWPQNIADAYVDNDHQVLM 197

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
           S +    E+   +            F  L++ S + +         S             
Sbjct: 198 SGQPLEFEEPIPNPDGSTGMWLSLKF-PLRDESGKVYGTGGISTDISDRNRVSIEIASAK 256

Query: 324 ETVDKCPIP 332
           E  ++    
Sbjct: 257 EEAERANHA 265


>gi|318607055|emb|CBY28553.1| bara sensory histidine kinase (= VarS = GacS) [Yersinia
           enterocolitica subsp. palearctica Y11]
          Length = 847

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 86/335 (25%), Positives = 146/335 (43%), Gaps = 17/335 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           LF Y +   +  P    +       ++      L   +   +             +++ +
Sbjct: 192 LFAYRLMRDVTGPIRNMVN-----AVDRIRRGQLDSRVEGHMLGELNILKNGINSMAMSL 246

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 247 AAYHEEMQQNIDQATSDLRETLEQMEIQNVELGLAKKRAQEAARIKSEFLANMSHELRTP 306

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+     Q       P   +Y   I RS N +L I+ND+LD SK+E+ K+ L  
Sbjct: 307 LNGVIGFT----RQTLKTSLTPTQTDYLQTIQRSANNLLCIINDVLDFSKLEAEKLILEH 362

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P SL  A+ E I L+   A+EK + +      ++P  ++ D   ++QI  N+L NAI F
Sbjct: 363 IPFSLRGALDEVIILLAHTAHEKGLELTLHVNKDVPEQVIGDAMRLQQIVTNLLGNAIKF 422

Query: 719 TPSGGQ---IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T  G     + +    +    +++ + DTG+G++  +  +  + F Q   S   R  GTG
Sbjct: 423 TEQGNIDILVAVRAIASQQVTLVVEIHDTGIGISESQQAQLFQAFRQADASISRRHGGTG 482

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           LGL + + +V    G     S   +G+       L
Sbjct: 483 LGLVITERLVKEMGGDISFHSQVERGSTFRFHLTL 517


>gi|209520877|ref|ZP_03269618.1| integral membrane sensor signal transduction histidine kinase
           [Burkholderia sp. H160]
 gi|209498684|gb|EDZ98798.1| integral membrane sensor signal transduction histidine kinase
           [Burkholderia sp. H160]
          Length = 437

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 72/409 (17%), Positives = 160/409 (39%), Gaps = 35/409 (8%)

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK-----RKMEIEVMQLCSILEATSDGI 465
                +      + P      G     +     +     R++E +  +    ++A+ +G+
Sbjct: 52  RLWRLLDAPVYGEVPSAPGIWGEIYYRLHKLAKRWHAQVRQVEQQHSRFIQAIQASPNGV 111

Query: 466 AIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
           A+++    I   N      FG   +  LR+  T  +   +     +              
Sbjct: 112 AMLDDHDQIEWCNAISESHFGLDAKRDLRQHITHLVRHPSFVRYLN----------SHRY 161

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
           E++ +     EK  ++  +       +   +   DI+E ++                + +
Sbjct: 162 EEMLIMRGMGEKRQNVLSVQVFPYGDNRKLVLSQDITELERT--------------DAMR 207

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
            DF+A VSHE++TPLT + GF E ++     PL       Y + +++  + +  IV+DLL
Sbjct: 208 RDFVANVSHELKTPLTVLSGFLETMRE---LPLSEAERARYLDLMEQQASRMRHIVSDLL 264

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
            ++ +E          + +   +       +  +++    I       +  +      + 
Sbjct: 265 VLATLEGDNRTPSDHMIDMQSVLRHLQDDAESLSSDHH-RIVFDADEAL-TVTGVETEIL 322

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
               N+++NAI +TP GG I +S       + +  V D+G+G+   ++ +  + F ++  
Sbjct: 323 SAFGNLVTNAIRYTPDGGSIKVSWR-AHGGQAVFSVADSGLGIPAADIPRLTERFYRVDR 381

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           S+     GTGLGL + K ++  +  +  + S   +G+   + FP+  T+
Sbjct: 382 SRSRDTGGTGLGLAIVKHVLQRHDAQLEVKSEEGRGSTFTVRFPVSRTA 430


>gi|162449459|ref|YP_001611826.1| two-component histidine kinase [Sorangium cellulosum 'So ce 56']
 gi|161160041|emb|CAN91346.1| two-component histidine kinase [Sorangium cellulosum 'So ce 56']
          Length = 671

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 85/439 (19%), Positives = 165/439 (37%), Gaps = 30/439 (6%)

Query: 392 TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT---------RI 442
           +  A  ARL      +E                   + Q   E E  +          R 
Sbjct: 220 SIFALDARLTEEARAKERLEQQVAERTADLRHANAQLRQKIAEHERTEAALRKVAEECRC 279

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            +  +      L +I+++++  +A+ + EG  L  NR   +LFG   E I+ K       
Sbjct: 280 AEEALRTSQELLRAIIDSSTAIVAVKDIEGRYLLVNRRFEELFGVAREAIVGKRDDDVFS 339

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY----SLTM 558
           +     +  +    L        E++     +++ + +   I   L  ++          
Sbjct: 340 REHAEALRAFDRRALLAGTALKDEEVMP---EDDGVHTYLTIKFPLRDAAGVPYAVGGIS 396

Query: 559 HDISEWKQEKNKL-------SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
            DI+E K+ + +          A+  AE     + DFL+  SHE+ TP+  +    + + 
Sbjct: 397 TDITERKKIEAERALVLEHEQRARTAAEAAVRMRDDFLSIASHELYTPIAGLKLAVQGLM 456

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
            +           + A   +R    ++ ++ DLLD+++I++GK++L    V L     E 
Sbjct: 457 RE--ATTLPAGATKLARMAERQCQRLVRLIEDLLDVARIQAGKLDLRLGDVDLRALSREV 514

Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
           +    +   +    +       +  +  D   ++Q+  N++ NAI +   G  I IS   
Sbjct: 515 VEHFDVELKQAGSTVSWRADAPVVGMW-DRARLEQVVTNLVLNAIKYG-RGKPIEISVAA 572

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
              E   L V D G+G+         + F +  ++Q     G GLGL +++ +VD + G 
Sbjct: 573 E-GEVARLVVADRGIGIDASCAPYIFERFERGVSAQ--HYGGLGLGLYISRQIVDGHGGS 629

Query: 792 FYIFSTPAKGTLIEIIFPL 810
             + S    G    +  PL
Sbjct: 630 IRVESELGAGAAFIVELPL 648



 Score = 61.2 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 28/244 (11%), Positives = 55/244 (22%), Gaps = 9/244 (3%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI-GDLLKRQNTWYGKTT 148
           D  G    ++    +  G     ++G R  DV    H +         L        +  
Sbjct: 306 DIEGRYLLVNRRFEELFGVAREAIVGKRDDDVFSREHAEALRAFDRRALLAGTALKDEEV 365

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN---DPRALGKRLDKKFS 205
           +   +G + Y+ I     P+         +   GI             RAL    +++  
Sbjct: 366 MPEDDGVHTYLTIKF---PLRDAAG--VPYAVGGISTDITERKKIEAERALVLEHEQRAR 420

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
              E                              +             L           
Sbjct: 421 TAAEAAVRMRDDFLSIASHELYTPIAGLKLAVQGLMREATTLPAGATKLARMAERQCQRL 480

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
              + +  D   I   +   +     L+  S+E  E+       + S      +      
Sbjct: 481 VRLIEDLLDVARIQAGKLDLRLGDVDLRALSREVVEHFDVELKQAGSTVSWRADAPVVGM 540

Query: 326 VDKC 329
            D+ 
Sbjct: 541 WDRA 544


>gi|85704542|ref|ZP_01035644.1| two-component sensor [Roseovarius sp. 217]
 gi|85670950|gb|EAQ25809.1| two-component sensor [Roseovarius sp. 217]
          Length = 454

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 71/246 (28%), Positives = 125/246 (50%), Gaps = 2/246 (0%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E  ++   +    + A+     KS FLA VSHE+RTPLT+I+G  +++ +   G +   +
Sbjct: 206 ERLEQIQLIKQENERAKAALEVKSQFLATVSHELRTPLTSIMGSLDLVNSGVLGEVP-EK 264

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                    ++G+ + ++++DLLD+ KIE+G++  HF+P++ +E V EA+     YA + 
Sbjct: 265 LKHVIGIAAKNGHRLANLIDDLLDLQKIEAGEIVFHFKPLNANELVDEAVESTTGYAGKL 324

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
            I + T       R L D   + Q+  N+LSNA+ F+   G + +         + + V 
Sbjct: 325 GIQVTTIHCEEDCRFLGDRSRLIQVMNNLLSNALKFSHERGTVRVRVEAL-GTRIRISVH 383

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D GVG+     ++    F Q+ +S   +  GTGLGL ++K +V+ + G     S    G+
Sbjct: 384 DEGVGIPKDAKDRVFGKFSQVDSSDVRKVGGTGLGLNISKQIVERHNGTIDYVSELGVGS 443

Query: 803 LIEIIF 808
              I F
Sbjct: 444 TFSIEF 449


>gi|114330963|ref|YP_747185.1| periplasmic sensor signal transduction histidine kinase
           [Nitrosomonas eutropha C91]
 gi|114307977|gb|ABI59220.1| periplasmic sensor signal transduction histidine kinase
           [Nitrosomonas eutropha C91]
          Length = 438

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 79/415 (19%), Positives = 154/415 (37%), Gaps = 31/415 (7%)

Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT-RINKRKMEIEVMQL 454
               L+T+    +      +      ++              V      +  + + + +L
Sbjct: 42  VIYHLYTLYCLDQWLRHSDYSYSTVPDRSGLWGVVFARLARFVRRSDKERLGLNLSLERL 101

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
                A  +GI I+  +  I   N +     G  +     +  T  + Q           
Sbjct: 102 QRATSALPEGIVILGDKDQIEWCNSSAELHLGLNLGMDAGQHITRMVRQVRFVAYLDA-- 159

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA 574
                       K  L +    +   L I I          L   D++ +++ +      
Sbjct: 160 --------GDFSKPFLLNQTRFRDTLLSIQIVPYGD-REKLLISRDVTRFEKLEI----- 205

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
                     + DF+A VSHE+RTPLT I GF E +  +        +       +    
Sbjct: 206 ---------MRRDFVANVSHELRTPLTVIGGFLETLLEENKVSGDMEK--NALRLMFDQA 254

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
             +  +V DLL +S++E+   NL  E V + + +       Q  +  +   I    A++ 
Sbjct: 255 TRMRRLVEDLLTLSRLENAGNNLAEEKVDIVKLLQGLYQEAQSLSAGRH-TISLDLASHA 313

Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELE 754
             +L     ++    N++SNA+ +TP  G I ++ T   N + +  V+D+G+G+    + 
Sbjct: 314 -MLLGSEDELRSAFENLISNAVRYTPENGVISLNWTVE-NGKGLFYVQDSGIGIEPNHIP 371

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +  + F ++  S+     GTGLGL + K +++ +     I S P  G++  + FP
Sbjct: 372 RLTERFYRVDRSRSRETGGTGLGLAIVKHVLNRHQASMEITSQPGAGSIFRMWFP 426


>gi|77460443|ref|YP_349950.1| multi-sensor hybrid histidine kinase [Pseudomonas fluorescens
           Pf0-1]
 gi|77384446|gb|ABA75959.1| multi-sensor hybrid histidine kinase [Pseudomonas fluorescens
           Pf0-1]
          Length = 922

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 78/243 (32%), Positives = 142/243 (58%), Gaps = 8/243 (3%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  A+K A + S  KS+FLA +SHEIRTPL  I+GF+ +++     P    R ++Y   
Sbjct: 275 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSELTP----RQLDYLGT 330

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I++S + +L I+N++LD SKIE+GK+ L   P +L + + + ++++   A+ K++ + + 
Sbjct: 331 IEKSADSLLGIINEILDFSKIEAGKLVLDHIPFNLRDLLQDTLTILAPAAHAKQLELVSL 390

Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EVILRVRDTG 745
              + P  ++ D   +KQI  N++SNAI FT  G  +  +     N+   ++ + ++DTG
Sbjct: 391 VYRDTPLSLVGDPLRLKQILTNLVSNAIKFTREGTIVARAMLEEENDDSVQLRISIQDTG 450

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G++N ++    + F Q  NS   +  GTGLGL ++K +++   G+  + STP +G+   
Sbjct: 451 IGLSNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFW 510

Query: 806 IIF 808
           I  
Sbjct: 511 ISL 513


>gi|301161754|emb|CBW21294.1| putative histidine kinase [Bacteroides fragilis 638R]
          Length = 389

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 78/340 (22%), Positives = 143/340 (42%), Gaps = 20/340 (5%)

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL-EKITLGSTKEE- 536
            A  ++F      +        + +     +      IL   +++ + E       +E  
Sbjct: 54  PAGWEIFHNDSFPVSIARVYQGIYKEDRLRVIEACRGILKGKMKKVVVELRFWAKKREGF 113

Query: 537 --KLLSLRIIIKKLPFSSCYSLT---MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
             + L +  I  K+  +         +  I+  K  + +L+ AK+ AE+ +  KS  +A 
Sbjct: 114 VLEWLEMHAIPGKVDENGRLLTVEGSLMSITRRKVMEEELTAAKEKAEEANRLKSALIAN 173

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           ++HEIRTPL A++GF+ ++              EY   I  +   +L ++ND++D+S IE
Sbjct: 174 MNHEIRTPLNAVVGFASLLS----IIDDEKEQQEYIGLIQSNTEHLLRLMNDVIDLSNIE 229

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
           SG M++    V LD  + E        A    +++      +   I  D   + QI  ++
Sbjct: 230 SGVMDIVGSDVVLDSLMKEMELTYVPKAETNNLVLAWDREQSNAHIYTDRDRLIQILEHL 289

Query: 712 LSNAIHFTPSGGQIIISTTHT--SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
           L NAI FT  G    +   +    N ++   V DTG G+ N + E   + F ++ +    
Sbjct: 290 LDNAIKFTTKG---TVRWGYQEKENGQIRFYVTDTGCGIPNDKKEVIFERFVKLDSFT-- 344

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             +G GLGL L K +++   G   + S   +G+      P
Sbjct: 345 --QGLGLGLSLCKIIIERMHGTIGVESEVGEGSTFWFTIP 382


>gi|302542098|ref|ZP_07294440.1| sensor histidine kinase/response regulator [Streptomyces
            hygroscopicus ATCC 53653]
 gi|302459716|gb|EFL22809.1| sensor histidine kinase/response regulator [Streptomyces
            himastatinicus ATCC 53653]
          Length = 1823

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 113/740 (15%), Positives = 248/740 (33%), Gaps = 58/740 (7%)

Query: 120  DVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFR 179
            D++  + ++    +  L    NT    TTL         V  ++    I        G  
Sbjct: 858  DLTKKVTVEARGEVAALADTVNT--MVTTLSSFADEVTRVAREVGTDGILGGQARVPGVS 915

Query: 180  GFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK 239
            G           +  A       +   +         + K K DI ++          N 
Sbjct: 916  G--TWKDLTESVNSMASNLTGQVRNIAMVTTAIAQGDLTK-KIDIEARGEILELKTTINT 972

Query: 240  VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
            +      +A +   +  E          +          +L +   +      +     +
Sbjct: 973  MVDQLSSFADQVTRVAREVGTEGQLGGQARVRDVAGTWKDLTESVNEMAGNLTRQVRAIA 1032

Query: 300  FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTK------ 353
                +            +         D       + +      AN     L        
Sbjct: 1033 EVATAVTRGDLNLKIDVDASGEIQVLQDHINT--MIANLRETTLANKEQDWLKGNLARIS 1090

Query: 354  --YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA---RLHTIQWNRE 408
               +   D+E    L      P +S  +    + +   + T + A +     + ++    
Sbjct: 1091 GLMQGRRDLEDVARLIMSELTPVVSAQHGAFFLAVPVGEGTEVVADSTSEEGYELRLIGS 1150

Query: 409  NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468
               A+  +P                +   +   +    ++I       + EA    + ++
Sbjct: 1151 YGYAIGSMPTSFRPGETLIGTVAEEKRPILVENVPPGYLKIAS----GLGEAAPAHVIVL 1206

Query: 469  ------NREGIILSTN-RAVSKL---FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
                     G+I   + +  +++   F   + +++              V+     E+  
Sbjct: 1207 PVLFEGQLLGVIELASFQPFAQIQKDFLNQIAEMIGTSVNTISVNTKTEVLLKQSQELTE 1266

Query: 519  LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578
                ++ E        +     L     +L   +      +  +E ++ +  L    +  
Sbjct: 1267 QLRERSAELENRQKALQASNAELEEKSDRLARQNRDIEVKN--TEIEEARQVLEERAEQL 1324

Query: 579  EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
                 +KS+FLA +SHE+RTPL +++  ++++ +   G L  P+ +E+A  I  +G+ +L
Sbjct: 1325 AVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNAEGNLS-PKQVEFAETIHGAGSDLL 1383

Query: 639  DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RI 697
             ++ND+LD+SK+E+GKM++    ++L + V    +  +    EK +      +  +P  +
Sbjct: 1384 QLINDILDLSKVEAGKMDVSPTRIALVQLVDYVEATFRPLTAEKGLDFSVRVSPELPATL 1443

Query: 698  LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT---------------------SNEE 736
              D + + Q+  N+LSNA+ FT  GG + +                            + 
Sbjct: 1444 HTDEQRLLQVLRNLLSNAVKFT-DGGAVELVIRPAGVDVPNAIREQLLEHGALRDPEADM 1502

Query: 737  VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
            +   V DTG+G+   ++    + F Q   +   +  GTGLGL +++ +     G+ +  S
Sbjct: 1503 IAFSVTDTGIGIAASKMRVIFEAFKQADGTTSRKYGGTGLGLSISREIARLLGGEIHAAS 1562

Query: 797  TPAKGTLIEIIFPLYDTSHP 816
             P +G+   +  PLY +  P
Sbjct: 1563 EPGRGSTFTLYLPLYPSELP 1582


>gi|217979631|ref|YP_002363778.1| multi-sensor hybrid histidine kinase [Methylocella silvestris BL2]
 gi|217505007|gb|ACK52416.1| multi-sensor hybrid histidine kinase [Methylocella silvestris BL2]
          Length = 839

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 100/628 (15%), Positives = 200/628 (31%), Gaps = 40/628 (6%)

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
           +     +     G        Y  F   S    LR   ++       A +      +   
Sbjct: 89  ENPDGLIATQANGGILYANPAYRAFCASSSLAELRPVERLIGGGSPEASEAVYRLAQAAR 148

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
              +       +         +  + +            +                +   
Sbjct: 149 EGRAHVEETRLKPSAGGAAGWRRIETRPLQFPGAKRATLWTVADITRDRERQEAAFQELR 208

Query: 321 LTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
              + +D  P  FF     G + Y N +      Y   +      G   L     LS + 
Sbjct: 209 RAIDCLDNAPAGFFSCRGDGTVDYVNATLAAWLDYDLAEI-----GSGGLTLGAFLSGDA 263

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
           A +   L  +          L  ++     +L +  I     +      P + +  +   
Sbjct: 264 AQRVAALAGAPGEVKTQILDL-ELKRRGGQTLPVRLIHRVTFDADGAAGPSHSLALDRAG 322

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
                            + EAT   IA+++ +G I+ +N A +++     +         
Sbjct: 323 IAERSDDPRRAETWFPRLFEATPIAIALLDGQGRIVRSNAAFARVMPDAAKPTDGAERGA 382

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQ--TLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT 557
                           + +    +          + + ++   L I   +    S  ++ 
Sbjct: 383 IYAGVAARDRAALELALAAAAKARRDIAPVDVALAGEGDRSARLFISASEEGDGSGAAIF 442

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
             D +E +  ++  + ++K+              V+H+    LTAIIGFS+++       
Sbjct: 443 ALDTTEQRALQSNFAQSQKM-----QAIGQLAGGVAHDFNNVLTAIIGFSDLLLANHRPT 497

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
             +P + +    I ++      +V  LL  S+    +  L  + + L + +SE   L++ 
Sbjct: 498 --DPSFRDIMQ-IKQNAIRAAGLVRQLLAFSR----RQTLRPQVLQLGDVLSELQMLMRR 550

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT------- 730
              EK I +      ++  I ADL   +Q+ +N++ NA    P GG+I++ T        
Sbjct: 551 LVGEK-IHLELRHGRDLWLIRADLNQFEQVIVNLIVNARDAMPDGGEILLKTRNVAPHEC 609

Query: 731 -------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
                    + + V + V D G G+     +K  +PF          G+GTGLGL +   
Sbjct: 610 DGFEEKSLPAADYVAIEVEDCGHGVPPEVRDKIFEPFFTTK----EVGKGTGLGLAMVYG 665

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFPLY 811
           +V    G  +  S P KG    ++ P Y
Sbjct: 666 IVKQTGGFVFCSSPPGKGATFTVLLPRY 693



 Score = 43.5 bits (101), Expect = 0.15,   Method: Composition-based stats.
 Identities = 30/383 (7%), Positives = 79/383 (20%), Gaps = 23/383 (6%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150
             G +  ++  L   +     + IG     +   L  D    +  L         +    
Sbjct: 226 GDGTVDYVNATLAAWLDYDLAE-IGSGGLTLGAFLSGDAAQRVAALAGAPGEVKTQILDL 284

Query: 151 P-IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
                    +P+ L     +  +          +        +     +R +  F  L E
Sbjct: 285 ELKRRGGQTLPVRLIHRVTFDADGAAGPSHSLAL--DRAGIAERSDDPRRAETWFPRLFE 342

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
                 ++   +  I           M +                   +         + 
Sbjct: 343 ATPIAIALLDGQGRIVRSN-AAFARVMPDAAKPTDGAERGAIYAGVAARDRAALELALAA 401

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
             +       ++     +   + +     S E              ++    +     + 
Sbjct: 402 AAKARRDIAPVDVALAGEGDRSARLFISASEEGDGSGAAIFALDTTEQRALQSNFAQSQK 461

Query: 330 PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389
                  + G     N     +  +  +  +                  NAI+   L R 
Sbjct: 462 MQAIGQLAGGVAHDFNNVLTAIIGFSDL-LLANHRPTDPSFRDIMQIKQNAIRAAGLVRQ 520

Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449
                     L   +        +         Q             ++    +   +  
Sbjct: 521 L---------LAFSRRQTLRPQVLQLGDVLSELQMLMRRLVGEKIHLELRHGRDLWLIRA 571

Query: 450 EVMQLCSIL--------EATSDG 464
           ++ Q   ++        +A  DG
Sbjct: 572 DLNQFEQVIVNLIVNARDAMPDG 594


>gi|153870045|ref|ZP_01999526.1| two-component system sensor histidine kinase/response regulator
            [Beggiatoa sp. PS]
 gi|152073490|gb|EDN70475.1| two-component system sensor histidine kinase/response regulator
            [Beggiatoa sp. PS]
          Length = 1258

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 85/275 (30%), Positives = 140/275 (50%), Gaps = 33/275 (12%)

Query: 563  EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
            E  Q   +L  AK+ AE  +  KS FLA +SHE+RTPL AI+GF++++      P     
Sbjct: 752  ELAQSYQQLETAKEKAEVANRAKSTFLASMSHELRTPLNAILGFAQIMHRSSTLPT---E 808

Query: 623  YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
            + +  N I+RSGN +L ++ND+LD+SKIE+GK+ L  +   L   + E   L  L A  K
Sbjct: 809  HRDNLNIINRSGNYLLSLINDVLDMSKIEAGKITLDEQNFDLYRLLDEIYDLFYLKAESK 868

Query: 683  RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG------QI---------- 725
            ++ ++   ++++PR I  D + ++Q+ +N++SNA+ FT  GG      +I          
Sbjct: 869  QLQLQVERSDHLPRYIRTDGKKLRQVIINLISNALKFTQDGGVSLYADKIASNTSGEVPP 928

Query: 726  ----IISTTHTSNEE--------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
                 +      + E        +   V DTG G+   E++K  + F Q    +  + EG
Sbjct: 929  PSGRRLRGGKNPDGEDVNTEITTLHFSVADTGAGVAQEEMDKLFEAFSQTATGRASQ-EG 987

Query: 774  TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            +GLGLP+++       G   + S   KGT+ E+  
Sbjct: 988  SGLGLPISRQFTQLMGGNIQVRSEVGKGTVFEVTI 1022


>gi|110638476|ref|YP_678685.1| sensor histidine kinase/response regulator fusion protein
           [Cytophaga hutchinsonii ATCC 33406]
 gi|110281157|gb|ABG59343.1| sensor histidine kinase/response regulator fusion protein
           [Cytophaga hutchinsonii ATCC 33406]
          Length = 1158

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 76/265 (28%), Positives = 139/265 (52%), Gaps = 19/265 (7%)

Query: 563 EWKQEKNKLSHAKK----IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
           E K+         +      E  S +KS+FLA +SHE+RTPL +I+  S+++ + +   L
Sbjct: 447 EQKETLENAKMQIETKAHELELNSKYKSEFLANMSHELRTPLNSILILSQLLADNKNKSL 506

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
              + +E+A  I  SG+ +L+++N++LD+SK+ESGK++L  E VSL +  S   ++    
Sbjct: 507 S-EKEVEFAQNICNSGSDLLELINEILDLSKVESGKLDLEIEDVSLSKICSSIHAMFDEV 565

Query: 679 ANEKRILIRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTT------ 730
           A +K I  + + +  + +  +  D + ++QI  N+LSNA  FT + G +           
Sbjct: 566 AKKKLIQFKVNCSEKLLQTTVHTDRQRLEQIIRNLLSNAFKFTSAKGAVTFKIEAASEST 625

Query: 731 ------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
                   ++  + L V DTG+G+   + +   + F Q+  S + +  GTGLGL +++ +
Sbjct: 626 VFRNKNLNAHNCLALSVTDTGIGIPQNKQQIIFEAFQQVDGSTKRKYGGTGLGLSISREL 685

Query: 785 VDANMGKFYIFSTPAKGTLIEIIFP 809
             A  G+ ++FS   KG+   +  P
Sbjct: 686 STALGGEIHVFSEEDKGSTFTLFIP 710


>gi|297622077|ref|YP_003710214.1| putative sensor histidine kinase [Waddlia chondrophila WSU 86-1044]
 gi|297377378|gb|ADI39208.1| putative sensor histidine kinase [Waddlia chondrophila WSU 86-1044]
          Length = 586

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 74/363 (20%), Positives = 147/363 (40%), Gaps = 26/363 (7%)

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
           +  E  +  ++LE+  +G+  ++ +  I+  N    KL G  +  IL KP          
Sbjct: 245 LTKERNEKEAVLESLVEGVIAVDNQNRIIFANTMACKLLGTELPSILNKPVEAI----QQ 300

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQ 566
              +  +      +   T        +K        ++      ++   L + D +E   
Sbjct: 301 PKCSELVRLCQQEEKVLTDTLEIKLHSKRRHF---DLVAAPKKDATGAILVLQDKTE--- 354

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
                        K    + DF+A  SHE++TP+T I GF+E + +    P+      E 
Sbjct: 355 -----------HYKLIEMRKDFVANASHELKTPITIIQGFAEALHDNPGLPI--ETSSEI 401

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
            + I R+   +  ++ DLL ++ IE            L E +    S VQ    +  I +
Sbjct: 402 TSKIVRNCIKMTMLIKDLLTLTDIEH-IPESRLLETDLLELIQTVESTVQDAYPDAVITV 460

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
            ++  +    +LAD   ++    N++ NA  ++P   ++ ++     N  V + + D G 
Sbjct: 461 HSN-PDEQYFLLADPYLLELAFNNLIENAAKYSPPPAKVNVTLKQIKNG-VRIDISDQGY 518

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+   ELE   + F ++  ++  +  G+GLGL + + ++  + G+  + S   KG+   I
Sbjct: 519 GIPKKELENIFQRFYRVDTTRARKVGGSGLGLSIVETIIAKHFGEISVTSEEGKGSTFTI 578

Query: 807 IFP 809
             P
Sbjct: 579 FLP 581


>gi|284053245|ref|ZP_06383455.1| two-component hybrid sensor and regulator [Arthrospira platensis
           str. Paraca]
          Length = 252

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 73/229 (31%), Positives = 132/229 (57%), Gaps = 7/229 (3%)

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP--RYIEYANYIDRSGNLVLDIV 641
            KS+FLAR+SHE+RTPL AI+GF+++++ + +     P   + E+   I RSG  +L+++
Sbjct: 1   AKSEFLARMSHELRTPLNAILGFTQLMERELYHSPNIPLSDHKEHLEIIGRSGEHLLELI 60

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILAD 700
           ND+L++SKIE+G+++L+    +L   ++    +++L A+ K++ +  +  ++IP  I AD
Sbjct: 61  NDVLEMSKIEAGRVSLNPTNFNLISLLNSLREMLELPASSKKLTLDFAIDDHIPTYIYAD 120

Query: 701 LRSVKQIALNILSNAIHFTPSGGQI-IISTTH--TSNEEVILRVRDTGVGMTNYELEKAM 757
            + ++Q   N+L NAI FT  GG I  +          ++   V+DTG G+   E++   
Sbjct: 121 EQKLRQCLTNLLGNAIKFTLQGGVILRVKLGKFNHDLGQLCFEVQDTGPGIDASEMDLLF 180

Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           +PF Q    +  + +GTGLGL + +  +    G+  + S   KGT+   
Sbjct: 181 EPFSQTETGRNSQ-QGTGLGLSITQKFIGLMGGEIQVSSERGKGTIFRF 228


>gi|167648789|ref|YP_001686452.1| PAS/PAC sensor signal transduction histidine kinase [Caulobacter
           sp. K31]
 gi|167351219|gb|ABZ73954.1| PAS/PAC sensor signal transduction histidine kinase [Caulobacter
           sp. K31]
          Length = 770

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 102/631 (16%), Positives = 213/631 (33%), Gaps = 31/631 (4%)

Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253
              G     +F+   +     + +           +    +   +            D  
Sbjct: 154 DETGLPGAARFAAFMDGLIEPAWMSGADGVPAWGNAAYLRVVGADSAGDAAREGKSIDRA 213

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
                     + E  L E   +  I+  +   +     L+      F          +  
Sbjct: 214 ADALAVEAAKAGE--LREVVRWVPIDGRRRALRFSAQPLEGGGVGVFSSD-VTEVEDMRD 270

Query: 314 YFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                     ET++       ++S    L + N +F  L   +    +        +LD 
Sbjct: 271 ALKRHVEAHDETLNHIADAVAIFSQSRRLAFHNTAFANLWGLEP-AWLADRPTHGEVLDR 329

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
            +                       A L   +     +  M  +P  +  +        G
Sbjct: 330 LRQRRRLPETVDYAKWKA-------AELARYEDLGPQADEMWDLPDGRTLRVVRQPHPLG 382

Query: 433 IEPEDVDTRINKRKMEIEVMQL----CSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
                      + +++ +   L     + L+  +D +A+   +G +   N A    +   
Sbjct: 383 GMLLLYSDITGELRLKAQYNALIQVQQATLDKLNDAVAVFGSDGRLRLHNEAFETFWNVS 442

Query: 489 VEDILRK-PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII-- 545
            + +     F   +E   P + +      L   +     ++   ++ E +    RII+  
Sbjct: 443 AQALEAAVDFEGVVELCVPRLHDLSFWRELKGRVADPDPQMRAPTSGETRTSDNRIIVYQ 502

Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
            +        +   D+++ +  +  L+   +   +    K DF+  VS+E+RTPLT IIG
Sbjct: 503 SRPLPDGATLIAFADVTDTRDLQAALADRSQALTEAERLKRDFVGNVSYELRTPLTTIIG 562

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
           +SE+++        + R   +   +  +   +   ++D+LD+++I++G+M L    + + 
Sbjct: 563 YSELLER---ADGLSERSRGHVASVRSAATQLARSIDDVLDMAQIDAGEMALEIGDIRVA 619

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725
             +S+A       A    + +      ++  I  D + + QI  +++ NA+  TP  G +
Sbjct: 620 GLLSDAQERSLKIAQIGGVTLSVECDKDVGLIRGDQKRLSQILDHLIENALRQTPPDGVV 679

Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
            +S    +  EV L V DTG G+  +        F            G GLGL L KA+V
Sbjct: 680 TLS-ARRALGEVRLDVSDTGRGVPFHVQAHIFDRFV------GRDRGGPGLGLALVKALV 732

Query: 786 DANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           + + G   + S P  G+      P  +T  P
Sbjct: 733 ELHGGWVALESEPGAGSTFTCHLP--ETQQP 761


>gi|309791784|ref|ZP_07686272.1| PAS/PAC sensor signal transduction histidine kinase [Oscillochloris
           trichoides DG6]
 gi|308226190|gb|EFO79930.1| PAS/PAC sensor signal transduction histidine kinase [Oscillochloris
           trichoides DG6]
          Length = 622

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 91/647 (14%), Positives = 202/647 (31%), Gaps = 54/647 (8%)

Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK-VSSLTEYY 247
           + + P A    L    +               +              ++++   +L E+ 
Sbjct: 1   MTHTPAAPTILLLHPEAAARMALSAPLRAAGWEVLEVDSAVAAEQRNLESRPTVALIEHV 60

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
             +D                 L   +    I  +            +   +   ++    
Sbjct: 61  MGRDLCATLRAARYPQHLHCILITSDSSAAIPDDDLIDLWLLRPFNDY--QLLAHMRLLM 118

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFV--YSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365
             +             E ++     F+V           N ++  LT Y   + +     
Sbjct: 119 RLATLEQTHIPSLPYEEIIETTMDGFWVIRVRDQRFIMVNDAYCQLTGYSREELL----- 173

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
              L  A   +D +             C          + +      +  +         
Sbjct: 174 --NLHIADIEADEDEAAVKERISRLMACGFMRFESRHRRKDGS----LFDVEISVRLVDS 227

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKL 484
                     +  + R  +R+++ +  Q  +I +A    + +++     +L  N+   +L
Sbjct: 228 HEPLMVVFARDITEQRQAERRLQEQHEQFLTIFDAFPAILYVVDLATDEVLFVNKVFQEL 287

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
            GY     +        +             IL        E        +   L +   
Sbjct: 288 LGYDP---VGAKCYNAFQGFIQPCSFCTNEIILRTRQPHVWEYHNPIMNID---LLITDQ 341

Query: 545 IKKLPFSSCY-SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
           I + P           +I+E K+ +    +  +   +++      +   SH++R+PL  +
Sbjct: 342 IIRWPDGRDVRFELAINITEIKKVERDFENLSRELTRKNRELEQIVYVTSHDLRSPLVNV 401

Query: 604 IGFS-------EVIKNQRFGPLGNPRYIEYANY------------IDRSGNLVLDIVNDL 644
            GFS       + +  Q    +         N             I    N +  ++  L
Sbjct: 402 QGFSRELQASLDDLSQQLTALVIPDEQRTMINMLIKEEIPESIHFILNGVNRMDSLLKGL 461

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704
           L +S++  G+  L+ E + +   V E ++ +     +  + +       +P    D   +
Sbjct: 462 LRLSRL--GRSALNIETLDIQRMVQETLAALDFEIKQAGVTVEVQ---PLPACRGDAMQI 516

Query: 705 KQIALNILSNAIHFTPSG--GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
            Q+  N+++NA+ +      GQI IS +H +N  V+  V D G+G+     EK  + + +
Sbjct: 517 SQVFANLINNALKYLDPHRPGQITISASH-ANGMVVYAVTDNGIGLAPEHQEKIFELYYR 575

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +  +   + EG GLGL + + +VD + G   + ST   G+   +  P
Sbjct: 576 LDPT---QTEGEGLGLTIVRTIVDRHAGWIGVESTLGVGSKFFVALP 619



 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 9/133 (6%), Positives = 31/133 (23%), Gaps = 7/133 (5%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150
                  +++   +  G    +++ + + D+               L        ++   
Sbjct: 150 RDQRFIMVNDAYCQLTGYSREELLNLHIADIEADEDEAAVKERISRLMACGFMRFESRHR 209

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
             +G+   V I +  +  +                            +   ++F  + + 
Sbjct: 210 RKDGSLFDVEISVRLVDSHEP-------LMVVFARDITEQRQAERRLQEQHEQFLTIFDA 262

Query: 211 KKGHSSVEKEKYD 223
                 V     D
Sbjct: 263 FPAILYVVDLATD 275


>gi|254881711|ref|ZP_05254421.1| two-component system response regulator sensor kinase [Bacteroides
           sp. 4_3_47FAA]
 gi|319643677|ref|ZP_07998294.1| two-component system response regulator sensor kinase [Bacteroides
           sp. 3_1_40A]
 gi|254834504|gb|EET14813.1| two-component system response regulator sensor kinase [Bacteroides
           sp. 4_3_47FAA]
 gi|317384707|gb|EFV65669.1| two-component system response regulator sensor kinase [Bacteroides
           sp. 3_1_40A]
          Length = 757

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 93/424 (21%), Positives = 169/424 (39%), Gaps = 20/424 (4%)

Query: 392 TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV--DTRINKRKMEI 449
             I     +    W  + +  +  +           +              +   R +  
Sbjct: 346 ESIPPEYTIMYRPWREKYATPILILESLLVFTLLLGIAYLIYIYTLEKGRKKEALRNLRF 405

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
           E   L   LE  +      + +  +L   +A  +L       +  +    ++  +  +  
Sbjct: 406 EHEALTLALEGGNTYAWCFDGKTAVLD--QAFCELTNRSQNLLGIEEIAHYVHPDEQARF 463

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS-LTMHDISEWKQEK 568
              ++ IL    R+T +     +    +    R  + +    +      + +I E K ++
Sbjct: 464 RKNVSNIL-HRQRRTAQYRCQFNDTGYQWWEFRYSVLQNNEQNPIITGLLVNIQEIKDKE 522

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
            +L  A+K+AE+    K  FLA +SHEIRTPL AI+GFS ++  ++   +      E+A+
Sbjct: 523 EELIRARKLAEQA-ELKQSFLANMSHEIRTPLNAIVGFSNLLTTEK--NISEEEKKEFAS 579

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            ID +  L+L +VND+L++S+IESG M+ H E  S            Q+      +    
Sbjct: 580 IIDNNTRLLLKLVNDVLELSRIESGNMSFHCEDCSAHHFAETVYQTHQVIILPP-VEFIK 638

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH---TSNEEVILRVRDTG 745
            F +    I  D   + Q+  N L NA  FT  G    I   +      +E+ + V DTG
Sbjct: 639 EFPDEDVTIHIDRMRLTQVITNFLGNAKKFTSQG---HIKLGYFCDKEKKEIHIFVEDTG 695

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
            G+   EL+   + F +    +    +G GLGL ++K +V+   G   + S   KG+   
Sbjct: 696 AGIPKEELQMIFERFYK----RNEFVQGVGLGLAISKVIVEKMNGHIDVQSEVNKGSRFT 751

Query: 806 IIFP 809
            + P
Sbjct: 752 AVLP 755


>gi|168705546|ref|ZP_02737823.1| multi-sensor hybrid histidine kinase [Gemmata obscuriglobus UQM
           2246]
          Length = 559

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 79/430 (18%), Positives = 157/430 (36%), Gaps = 30/430 (6%)

Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
                + A+ R+   +        +  +        P          +  +     R++ 
Sbjct: 7   RPGEDVPATLRMLGAR----GGTRLVEMNAVNRLDDPSVCAVVVNYRDVTERDAAVREVA 62

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
            +   L  +  +  D +   +R+G +L  N A     G P   +                
Sbjct: 63  KQHTLLEGLFASVPDVVCYQDRDGRLLGCNPAFEAFAGRPASALAGTRCEDAFAGEWVPR 122

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQ 566
           +      +L+    +  ++     T  + LL   I   +    +     +   D++E  +
Sbjct: 123 IVAAQQVVLATGRTERSKEWVTYPTGRKALLDFAIAPLRDDSGAPVGLIVLGRDVTEQNR 182

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
            + +L  + K+              ++H+    LT ++G  E+I   R G        E 
Sbjct: 183 LEEELRQSHKL-----EAVGRLAGGIAHDFNNLLTVVLGNLELI---RCGAATGADAEEL 234

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
               +R+     ++   +L  ++    +  L    V L++ V +++ L++   +  RI++
Sbjct: 235 LASTERAAKQAAELTKQMLGFAR----RQPLRTASVDLNQLVRDSLVLLRRTIDA-RIVV 289

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS-------NEEVIL 739
           R   A ++  + AD   ++Q+ +N+  NA    P GG + + T              V L
Sbjct: 290 RFEPAPHLRPVAADPVQLQQVLMNLCLNARDAMPEGGTLTVETADADPPDGPEGKRFVRL 349

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V DTGVGMT+   EK   PF          G+GTGLGL +   +  A+ G   + S P 
Sbjct: 350 SVSDTGVGMTDEVREKIFDPFFTTKG----VGQGTGLGLAVVYGVATAHGGSVEVASAPG 405

Query: 800 KGTLIEIIFP 809
            G+  ++  P
Sbjct: 406 AGSRFDVYLP 415



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/247 (10%), Positives = 47/247 (19%), Gaps = 8/247 (3%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILH-IDPNNHIGDLLKRQNTWYGKTT 148
           D  G L   +       G  A  + G R  D                +L    T   K  
Sbjct: 83  DRDGRLLGCNPAFEAFAGRPASALAGTRCEDAFAGEWVPRIVAAQQVVLATGRTERSKE- 141

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
            W    T     +D A  P+   +    G    G        N      ++  K  +   
Sbjct: 142 -WVTYPTGRKALLDFAIAPLRDDSGAPVGLIVLG--RDVTEQNRLEEELRQSHKLEAVGR 198

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
                          +                +        +      E    +      
Sbjct: 199 LAGGIAHDFNNLLTVVLGNLELIRCGAATGADAEELLASTERAAKQAAELTKQMLGFARR 258

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV-- 326
            P +     +N              +         +    P  +      + L    +  
Sbjct: 259 QPLRTASVDLNQLVRDSLVLLRRTIDARIVVRFEPAPHLRPVAADPVQLQQVLMNLCLNA 318

Query: 327 -DKCPIP 332
            D  P  
Sbjct: 319 RDAMPEG 325


>gi|218781494|ref|YP_002432812.1| PAS sensor protein [Desulfatibacillum alkenivorans AK-01]
 gi|218762878|gb|ACL05344.1| PAS sensor protein [Desulfatibacillum alkenivorans AK-01]
          Length = 1086

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 76/415 (18%), Positives = 156/415 (37%), Gaps = 54/415 (13%)

Query: 433  IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
            ++ +    +  ++ ++    +  ++L  T D +   + EG++   N A  + +G+  +++
Sbjct: 680  LQEQIQKRKETEQALKKSEERYRTLLGTTPDAVVAYDEEGLVQYVNAAFVQTYGWSEDEL 739

Query: 493  LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
            + K    F+  +        L E+ S    + L+  T   TK   +L + +         
Sbjct: 740  MGKRID-FVPPHETERTRQALGELSSG---KFLDLETQRLTKSGDILDVLLKSAPFFNHE 795

Query: 553  CYS----LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                   +  HDI++ K+ +  +   +K+            A ++HEI  PL  II   +
Sbjct: 796  GKVIGSMVIHHDITQRKKAQEMMVQTEKMV-----SLGGLAAGMAHEINNPLAGIIQNVQ 850

Query: 609  VIKNQRFGPLGN------------PRYIEYAN---------YIDRSGNLVLDIVNDLLDI 647
            VI N+    +                   Y            +  SG+    IV+++L  
Sbjct: 851  VIINRLTQRIPPNVRAAQQCGTTMEAISHYVELRGLTGMFQSVVDSGSRAARIVDNMLSF 910

Query: 648  SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK------RILIRTSFANNIPRILADL 701
            S++         + V +   + + + +     N K      +I I   +  N+P +  + 
Sbjct: 911  SRM---NQQPVMKAVDMCALIDKTVDIASSDYNIKKKYDFRQIRIVRDYEANLPPVPCEE 967

Query: 702  RSVKQIALNILSNAIHFTPSGG------QIIISTTHTSNEEVILRVRDTGVGMTNYELEK 755
              ++Q+ LN+L NA               I +       + V + V D G GM      +
Sbjct: 968  GKIQQVILNLLRNAAQAMAEQKGRQSLPTITLRVGAYDAKNVRVEVSDNGPGMQEDVRRR 1027

Query: 756  AMKPFGQIPNSQQIRGEGTGLGLPLAKAMV-DANMGKFYIFSTPAKGTLIEIIFP 809
              +PF          G+GTGLGL ++  ++ + + G  ++ S P +G    I  P
Sbjct: 1028 IFEPFYTTKA----VGQGTGLGLSVSFFIITENHKGAMWVESNPGQGASFIITLP 1078



 Score = 41.2 bits (95), Expect = 0.66,   Method: Composition-based stats.
 Identities = 13/88 (14%), Positives = 30/88 (34%), Gaps = 3/88 (3%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D  G ++ ++    +T G    +++G R+ D       +        L        +T  
Sbjct: 716 DEEGLVQYVNAAFVQTYGWSEDELMGKRI-DFVPPHETERTRQALGELSSGKFLDLETQR 774

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSG 177
               G    + + L + P ++   +  G
Sbjct: 775 LTKSGDI--LDVLLKSAPFFNHEGKVIG 800


>gi|89054475|ref|YP_509926.1| PAS/PAC sensor hybrid histidine kinase [Jannaschia sp. CCS1]
 gi|88864024|gb|ABD54901.1| PAS/PAC sensor hybrid histidine kinase [Jannaschia sp. CCS1]
          Length = 752

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 93/558 (16%), Positives = 181/558 (32%), Gaps = 51/558 (9%)

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
             +  F        T+          +    +  +    PS                 + 
Sbjct: 87  AAERRFGERLGLPMTRAIAGALPNAAAVVFRQETALGRRPSAHEVVVTPRGTVRLAAHRL 146

Query: 330 PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389
                ++   ++  AN           +        LS       + D    +   L   
Sbjct: 147 NGGV-IWRLDDMADANSRHGEWIGLPMMVVSHNDTVLSM---NSAMRDVLGRRATTLEDV 202

Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449
                  + R  ++         +        +   E     G+      +   +     
Sbjct: 203 FPDQPLVAGRRSSLSGADGKIEVIPI-VVPSKDGRREVYAVPGLSEPPAASVAARA---- 257

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
                    E+    +  I+ +G +L++N    KL G                +N    +
Sbjct: 258 --------FESLPVALLHISADGEVLASNHHAQKLLGIEASTTGPM---AQFVENLGRPV 306

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN 569
             ++ + L+  +    E       ++E  L + +              +HD +E K  + 
Sbjct: 307 GDWVADTLAERVPNRSEVARAKQRRDETFLQISLSRIVDGTGPSLLAVLHDATELKTLEQ 366

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +   ++K+         +    V+H+    LTAI G  +++  +     G+  Y +    
Sbjct: 367 QFVQSQKM-----QAIGELAGGVAHDFNNLLTAITGHCDLLLLRHDQ--GDQDYADLVQ- 418

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I+++ N    +V  LL  S+    K  L  E + L +++ E   L+      +RI +  S
Sbjct: 419 INQNANRAASLVGQLLAFSR----KQTLEPEVLDLRDSIGELTHLL-NRLVGERISLSLS 473

Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT--------------SNE 735
              ++  I AD R + Q+ +N++ NA      GG++ + T                 +  
Sbjct: 474 NDPDLAPIRADRRQLDQVIMNLVVNARDAMADGGEVRVETRMVHLAEPMSRDQAIVPAGS 533

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            V +RVRD G G+   +L +  +PF          GEGTGLGL +A  +V    G  ++ 
Sbjct: 534 YVTIRVRDHGHGIPPDKLHRIFEPFFTTK----RTGEGTGLGLSMAYGIVKQTGGYIFVD 589

Query: 796 STPAKGTLIEIIFPLYDT 813
           S    GT   I  P +D 
Sbjct: 590 SVVGSGTTFTIYIPAHDV 607


>gi|420780|pir||A46414 histidine protein kinase divJ - Caulobacter crescentus
          Length = 596

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 101/357 (28%), Positives = 176/357 (49%), Gaps = 12/357 (3%)

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
           L ++L+        +  +G + +   A     G    D++ +  T          +   +
Sbjct: 206 LETLLDGLPHLAIAVRGQGQVTAVRGAAP--PGVTRADLVNRGLTGAAAPGDRQRLTAAI 263

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH 573
            +              LG     ++++L +        +     + DI+  +  ++    
Sbjct: 264 AQAHREGSASLTFNPALGVE---RVVALDMHRV---APNQLVGVLRDITVERHREHARPG 317

Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
           A        + ++ FLA +SHE+RTPL AI+GFS++++ + FGPL + RY EYA  I  S
Sbjct: 318 AIDAEALA-AGRARFLANMSHELRTPLNAIMGFSDIMRARMFGPLSD-RYAEYAELIHES 375

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693
           G  +LD++ND+LD+SKIE+ +  L        EAV  A+ L+++ ++   + +R      
Sbjct: 376 GGHLLDLINDVLDMSKIEAERFELQRGVFDAREAVQAAMRLLRVQSDTAGVQLRGVLPPG 435

Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753
              + AD R++KQI LN++SNA+ FTP GGQ+ + T H  +  + + V DTGVG++  +L
Sbjct: 436 ELEVDADRRALKQIVLNLVSNALKFTPRGGQVTV-TAHGYDGVLEIVVADTGVGISPEDL 494

Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           E+  +P+ Q   ++Q    GTGLGL L +A      G+  I S    GT + +  P+
Sbjct: 495 ERLGRPYEQAGGAEQRA-RGTGLGLSLVRAFAQLLGGEMVIESRLGAGTTVSVRLPV 550


>gi|330950735|gb|EGH50995.1| PAS protein [Pseudomonas syringae Cit 7]
          Length = 387

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 86/346 (24%), Positives = 148/346 (42%), Gaps = 9/346 (2%)

Query: 478 NRAVSKLFGYPVEDILRKPFT--VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
           NR+  +  G   E +  +  T    + +     M+     +L        ++      K 
Sbjct: 1   NRSYEQSLGISFEQMNGRRLTDVNLIPRALAEQMHTDYLNLLENHQPVFSDRTIELPGKR 60

Query: 536 EKLLSLRIIIKKLPFS-SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
             +    +                 DI+E KQ + +L  A  +A + +  KS FLA +SH
Sbjct: 61  MDVWQWTVPFFAADGQLQGLLGGWIDITERKQLEQQLQEAMHLAAQANEAKSVFLASMSH 120

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           EIRTP+ AIIG  E+   Q       P          RS   ++ ++ + LD+++IE+G 
Sbjct: 121 EIRTPMGAIIGLLELECEQALRLGRIPSQG--LQVAHRSATELVALIGESLDLARIEAGG 178

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILS 713
           M L     SL+      I L    A EK + +R  F+         D   ++Q+  N+L 
Sbjct: 179 MQLSLAVTSLEGLFDGVIELFSAQAREKGVELRLEFSGQARGDYWLDPLRLRQVLHNVLG 238

Query: 714 NAIHFTPSGGQII---ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR 770
           NA+ FT  G  ++   +++    +  + + ++D+G G+     ++  +PF Q  +     
Sbjct: 239 NALKFTRQGAVVVTLDVTSDSPESTRLRIGIQDSGEGIDPQRQQQVFQPFTQANDDTAAH 298

Query: 771 GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
             G+GLGL + + +V+   G   + S P KGTL+ I  PL   S P
Sbjct: 299 YGGSGLGLSITRQLVELMKGDISLQSEPGKGTLVTIDLPLTRVSEP 344


>gi|331007285|ref|ZP_08330487.1| two-component sensor histidine kinase [gamma proteobacterium
           IMCC1989]
 gi|330418907|gb|EGG93371.1| two-component sensor histidine kinase [gamma proteobacterium
           IMCC1989]
          Length = 903

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 71/496 (14%), Positives = 167/496 (33%), Gaps = 29/496 (5%)

Query: 325 TVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
             D  P   FV      +  AN +FL +        +  +  L       +      +  
Sbjct: 417 VFDNVPDMLFVKDTEFRIVQANEAFLNVYPENMRSSVIGSTCLEGY---KEDEREEFLFF 473

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
             +           + L            +        ++  E     G+  +    +  
Sbjct: 474 DRIAFDKGFSETEESILFP----DGKYRTLLTKKVRFKDEQGEVF-ILGVASDITQIKQA 528

Query: 444 KRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILR--KPFTVF 500
           ++++     +    ++ +S G+   +   G  L  +    ++ G    D     + F   
Sbjct: 529 QQELLKSEQRYEVAVKGSSVGLWDFDVLTGE-LYWSDRFKQIVGVADSDFTGTLEEFAGR 587

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSL 556
           L       +       LS               ++   + +    + L          + 
Sbjct: 588 LHPEDEERVLSQFNLHLSNKAP--YNVEYRFRKEDGDYVWVHAEGQALWNEEGQPIRVAG 645

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
           ++ DI++ K  + +         + +     F    SH+++ PL  I  FSE ++     
Sbjct: 646 SVEDITKRKSSEIEREKLIDKLAESNEGLEHFAFVCSHDLQEPLRIIRSFSERLQKHMGD 705

Query: 617 PLG-NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
            L  + +   Y  +I         ++ D+L  S++++    L  E VS +  V      +
Sbjct: 706 SLDGDDKAQLYFKFIVDGAARAQVLIADILTYSRVDNDTQPL--EEVSPETLVEAVKQHL 763

Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG--QIIISTTHTS 733
           Q+   + +  +  S   ++P ++ +   + Q+  N+++N + + P+     + +S     
Sbjct: 764 QVGFEDDKRQVIYS---DLPLVVGNKTQIYQLLQNLINNGLKYQPADRDPSVYVSAVDDG 820

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
                  V+D G+G+     ++    F ++    Q    GTG+GL + K +V+ + G+ +
Sbjct: 821 QGYWQFTVKDNGIGIEPRYQKQIFDVFKRLHG--QGEYSGTGVGLAICKKVVERHGGRLW 878

Query: 794 IFSTPAKGTLIEIIFP 809
           + S   +G       P
Sbjct: 879 VESEKEQGASFHFTLP 894



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 47/471 (9%), Positives = 127/471 (26%), Gaps = 50/471 (10%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G    +++      G    ++ G           +   N     +  + +   +  
Sbjct: 275 IDPSGCYVSLNQAYAAPAGYLPEELEGKPWSVTVHPDDMPMLNEAYQQMLDEGSVVAEAR 334

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF--GIVHVNRVDNDPRALGKRLDKKFSH 206
               +G+  Y  + +  +  Y+ + E  G   F   I      +     L + L +   +
Sbjct: 335 GVRKDGSTFYKQVTM--ITQYNGDGEMIGHHCFLKDITERKEEEAGREELIQALARTNDN 392

Query: 207 LHEIK------------------------KGHSSVEKEKYDIFSQQSPP----PHLRMKN 238
           L + +                             V+  ++ I           P     +
Sbjct: 393 LIDSQEKILSGDKKLRTVLNFQSVVFDNVPDMLFVKDTEFRIVQANEAFLNVYPENMRSS 452

Query: 239 KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE 298
            + S       +D+  +   +  +  ++     +E     +    T        ++   E
Sbjct: 453 VIGSTCLEGYKEDEREEFLFFDRIAFDKGFSETEESILFPDGKYRTLLTKKVRFKDEQGE 512

Query: 299 SFEYLSHRNHPSLSAYFDEG----ENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLT 352
            F  L   +  +      +     E      V    +  + +    G   Y +  F  + 
Sbjct: 513 VF-ILGVASDITQIKQAQQELLKSEQRYEVAVKGSSVGLWDFDVLTGE-LYWSDRFKQIV 570

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
                D        +  L      +   +    L+ S++       R    +    + + 
Sbjct: 571 GVADSDFTGTLEEFAGRLHPED--EERVLSQFNLHLSNKAPYNVEYRF---RKEDGDYVW 625

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG 472
           +        N+  + +   G   +    + ++ + E  + +L    E       + + + 
Sbjct: 626 VHAEGQALWNEEGQPIRVAGSVEDITKRKSSEIEREKLIDKLAESNEGLEHFAFVCSHDL 685

Query: 473 I-----ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
                 I S +  + K  G  ++   +         +  +     + +IL+
Sbjct: 686 QEPLRIIRSFSERLQKHMGDSLDGDDKAQLYFKFIVDGAARAQVLIADILT 736



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 55/135 (40%), Gaps = 7/135 (5%)

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
             L + +    +GI+ I+  G  +S N+A +   GY  E++  KP++V +  +   ++N 
Sbjct: 259 ATLQNAVSKAVEGISFIDPSGCYVSLNQAYAAPAGYLPEELEGKPWSVTVHPDDMPMLNE 318

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQE 567
              ++L      ++     G  K+      ++ +          +     + DI+E K+E
Sbjct: 319 AYQQMLDEG---SVVAEARGVRKDGSTFYKQVTMITQYNGDGEMIGHHCFLKDITERKEE 375

Query: 568 KNKLSHAKKIAEKES 582
           +       +   + +
Sbjct: 376 EAGREELIQALARTN 390


>gi|326474208|gb|EGD98217.1| DRK1 histidine kinase [Trichophyton tonsurans CBS 112818]
          Length = 1331

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 75/265 (28%), Positives = 130/265 (49%), Gaps = 22/265 (8%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           +S  +    + + A++ AE  +  KS+FLA +SHEIRTP+  IIG +++  +        
Sbjct: 703 VSSLRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDD---LK 759

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
           P   E  N +    N +L I++D+LDISKIE+ +M +   P ++   V  A+  + + AN
Sbjct: 760 PYPREMLNVVHSLANSLLTIIDDILDISKIEANRMVIESIPFTMRGTVFNALKTLAVKAN 819

Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-------- 731
           EK + +     +++P  ++ D   ++QI LN++ NAI FT  G ++ +            
Sbjct: 820 EKFLNLTYQVDSSVPDYVIGDPFRLRQIILNLVGNAIKFTEHG-EVTLEIKKHVPPPPAD 878

Query: 732 -TSNEEVI--------LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
                EV           V+DTG+G+   +L+     F Q   S   +  GTGLGL ++K
Sbjct: 879 GEPEREVCADDEYAYEFSVQDTGIGIAKDKLDMIFDTFQQADGSTTRKFGGTGLGLSISK 938

Query: 783 AMVDANMGKFYIFSTPAKGTLIEII 807
            +V+   G  ++ S   +G+     
Sbjct: 939 RLVNLMGGDVWVTSEYGRGSTFHFT 963


>gi|302333163|gb|ADL23356.1| integral membrane sensor signal transduction histidine kinase
           [Staphylococcus aureus subsp. aureus JKD6159]
          Length = 583

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 62/376 (16%), Positives = 154/376 (40%), Gaps = 41/376 (10%)

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
            +   +   +        S++ +  +G+  IN    I+ +N+  + +             
Sbjct: 242 TEIEEHVDALSTSKNIRDSLINSMVEGVLGINESRQIILSNKMANDIMD----------- 290

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK---KLPFSSCY 554
              ++++  + +   + +       +  +          +   +        +    S  
Sbjct: 291 --NIDEDDKAFLLRQIEDTFKSKQTEMRDLEM-----NARFFVVTTSYIDKIEQGGKSGV 343

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
            +T+ D++                      K DF+A VSHE+RTP++ + G++E I +  
Sbjct: 344 VVTVRDMT--------------NEHNLDQMKKDFIANVSHELRTPISLLQGYTESIVDGI 389

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     E    +      +  +VN+LL+++++++  ++++ E   +   + +    
Sbjct: 390 VTE--PDEIKESLAIVLDESKRLNRLVNELLNVARMDAEGLSVNKEVQPIAALLDKMKIK 447

Query: 675 VQLYANEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
            +  A++  + +  ++     R+ + D+  + Q+  N++ NA  +T  G +I I+     
Sbjct: 448 YRQQADDLGLNMTFNYCKK--RVWSYDMDRMDQVLTNLIDNASRYTKPGDEIAITCAENE 505

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
           +E++ L ++DTG G+    L++    F ++  ++    +GTGLGL + K +++ + G   
Sbjct: 506 SEDI-LYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQGTGLGLFICKMIIEEHGGSID 564

Query: 794 IFSTPAKGTLIEIIFP 809
           + S   KGT   I  P
Sbjct: 565 VKSELGKGTTFIIKLP 580


>gi|299771551|ref|YP_003733577.1| Sensor protein gacS [Acinetobacter sp. DR1]
 gi|298701639|gb|ADI92204.1| Sensor protein gacS [Acinetobacter sp. DR1]
          Length = 935

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 77/243 (31%), Positives = 126/243 (51%), Gaps = 14/243 (5%)

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
           +  A   +  KS FLA +SHE+RTPL +I GF  ++  Q+     N     Y   I +S 
Sbjct: 280 RDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQN---LNNEQNLYLQTIRKSS 336

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
             +L ++ND+LD SKI++GK+ L   P  L+EA+ + + ++   A +K I +   +A+NI
Sbjct: 337 AHLLALINDVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKHIAMAFYYADNI 396

Query: 695 P-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDTGVGMT 749
           P  ++ D    KQI  N++SNAI FTP G +II+      ++     +   V+D+G+G++
Sbjct: 397 PQEVIGDALRFKQILTNLISNAIKFTPDG-EIIVRVRMEHDDIGQCLLHFSVQDSGIGLS 455

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP-----AKGTLI 804
             + +K  + F Q   S   +  GTGLGL ++K +V    G+             KG+  
Sbjct: 456 GTDRKKLFESFSQGDASVTRQFGGTGLGLAISKQLVHLMHGQIGFEDNQERAPTEKGSTF 515

Query: 805 EII 807
              
Sbjct: 516 WFT 518


>gi|939724|gb|AAA87840.1| putative sensor kinase; regulatory protein for production of
           antifungal antibiotics [Pseudomonas fluorescens Pf-5]
          Length = 917

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 78/243 (32%), Positives = 143/243 (58%), Gaps = 8/243 (3%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  A+K A + S  KS+FLA +SHEIRTPL  I+GF+ +++     P    R ++Y   
Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSELTP----RQLDYLGT 325

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I++S + +L I+N++LD SKIE+GK+ L   P +L + + + ++++   A+ K++ + + 
Sbjct: 326 IEKSADSLLGIINEILDFSKIEAGKLVLDSIPFNLRDLLQDTLTILAPAAHAKQLELVSL 385

Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQI---IISTTHTSNEEVILRVRDTG 745
              + P  ++ D   +KQI  N++SNAI FT  G  +   ++   H  + ++ + ++DTG
Sbjct: 386 VYRDTPLSLVGDPLRLKQILTNLVSNAIKFTREGTIVARAMLEEEHEDSVQLRISIQDTG 445

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G++N ++    + F Q  NS   +  GTGLGL ++K +++   G+  + STP +G+   
Sbjct: 446 IGLSNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFW 505

Query: 806 IIF 808
           I  
Sbjct: 506 ISL 508


>gi|282877036|ref|ZP_06285881.1| PAS domain S-box [Prevotella buccalis ATCC 35310]
 gi|281300879|gb|EFA93203.1| PAS domain S-box [Prevotella buccalis ATCC 35310]
          Length = 485

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 78/377 (20%), Positives = 170/377 (45%), Gaps = 31/377 (8%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            K+++    + +I+++  + I  ++ +  +   N     +     ED++ K       +N
Sbjct: 129 SKLKVSKQYIETIIDSIDEPIVCLDHKLTLYFINNEALSILNLRREDVVGKSAQETAMRN 188

Query: 505 TPSVMNHYLTEILSLDLRQTLEKIT----LGSTKEEKLLSLRIIIKKLPF------SSCY 554
              ++   L  +    + +T EK T    + +  +E    ++ +  ++         S  
Sbjct: 189 D--LLRRLLVGMDRHKVHETDEKKTEPLKIYADNKESYFQVKYLPVRMTDHEGSIKESGT 246

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
            + + +I+E                K    K+ F++ +SHE++TP++AI+   +++ N R
Sbjct: 247 VIMLKNITE--------------FHKLDVAKTTFISTISHELKTPISAILMSEQLLANNR 292

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
            G L N    E ++ I  +G  +L I  +LL+++++ESG + L        E +  AI  
Sbjct: 293 VGGL-NQEQKELSDSIRENGERLLSITGELLNMTQVESGVLQLKPHITRPIELIDYAIKA 351

Query: 675 VQLYANEKRILIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
            Q+ A++  I I   +    I ++  D   +  +  N+LSNAI ++    ++ I      
Sbjct: 352 NQVQADKFHINIEVDYPKEKINKLYVDSEKIAWVLTNLLSNAIRYSSENDRVTIGALQQD 411

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
              V+L V+D G G+     +   + + ++P +   + +G+GLGL +++  V+A+ G   
Sbjct: 412 EHHVMLYVQDFGRGIDPRYHDSIFERYFRVPGT---KIQGSGLGLSISRDFVEAHNGTLT 468

Query: 794 IFSTPAKGTLIEIIFPL 810
           + S   KG+   +  P+
Sbjct: 469 VESELGKGSKFVVSLPV 485


>gi|301162296|emb|CBW21841.1| putative two-component sensor histidine kinase [Bacteroides
           fragilis 638R]
          Length = 792

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 90/391 (23%), Positives = 169/391 (43%), Gaps = 17/391 (4%)

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDG--IAIINREGIILSTNRAVSKLFGYPVE 490
                +  R N + +E    +L      ++DG  I++ N +G  +  +   ++L G    
Sbjct: 410 TRRRSLIERKNLKILEEAHKRLTL----SADGGQISLWNMQGSDIEFDDNYARLTGVEKR 465

Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE-KLLSLRI-IIKKL 548
              R  F  ++  +   +++ +   +      +          K+  +   LR   +K +
Sbjct: 466 KFKRTDFLEYVHPDDSQLLSSFYEALCKSPGVEIQRVRFRFDEKKGYQWYELRCRSLKDI 525

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                 +  M +I E  + +++L  AK++AEK    K  FL  +SHEIRTPL AI+GF+ 
Sbjct: 526 KGEMMLAGIMQNIQESVEREHQLIVAKQMAEKA-ELKQSFLNNMSHEIRTPLNAIVGFTN 584

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
           V+  +    +           I+ +  L+L ++ND+L+IS+++SG ++   +  ++ + V
Sbjct: 585 VLLGEGSEEIDPDEKASMLEIINHNNELLLKLINDVLEISRLDSGSLDFDMKEWNMTDIV 644

Query: 669 SEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIII 727
            E     Q       +  R    + +P  +  D     Q+  N L+NA  FT   G I +
Sbjct: 645 KEIYKTYQPLI-RSSLQFRLELDDTVPVPVHTDRLRFAQVISNFLNNANKFT-QNGYIAL 702

Query: 728 STTHTSNE-EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
                    EV + V D+G G+   EL    + F +         +G+GLGL ++K +++
Sbjct: 703 GCKVDKKHREVRIYVEDSGKGIDEKELMMIFERFYKTD----EFEQGSGLGLAISKVIIE 758

Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
              G+  + S   KG+   +I  L D    H
Sbjct: 759 RLSGRIKVHSEKGKGSCFTVILSLADAPENH 789


>gi|253563388|ref|ZP_04840845.1| two-component system histidine kinase [Bacteroides sp. 3_2_5]
 gi|251947164|gb|EES87446.1| two-component system histidine kinase [Bacteroides sp. 3_2_5]
          Length = 792

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 90/391 (23%), Positives = 169/391 (43%), Gaps = 17/391 (4%)

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDG--IAIINREGIILSTNRAVSKLFGYPVE 490
                +  R N + +E    +L      ++DG  I++ N +G  +  +   ++L G    
Sbjct: 410 TRRRSLIERKNLKILEEAHKRLTL----SADGGQISLWNMQGSDIEFDDNYARLTGVEKR 465

Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE-KLLSLRI-IIKKL 548
              R  F  ++  +   +++ +   +      +          K+  +   LR   +K +
Sbjct: 466 KFKRTDFLEYVHPDDSQLLSSFYEALCKSPGVEIQRVRFRFDEKKGYQWYELRCRSLKDI 525

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                 +  M +I E  + +++L  AK++AEK    K  FL  +SHEIRTPL AI+GF+ 
Sbjct: 526 KGEMMLAGIMQNIQESVEREHQLIVAKQMAEKA-ELKQSFLNNMSHEIRTPLNAIVGFTN 584

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
           V+  +    +           I+ +  L+L ++ND+L+IS+++SG ++   +  ++ + V
Sbjct: 585 VLLGEGSEEIDPDEKASMLEIINHNNELLLKLINDVLEISRLDSGSLDFDMKEWNMTDIV 644

Query: 669 SEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIII 727
            E     Q       +  R    + +P  +  D     Q+  N L+NA  FT   G I +
Sbjct: 645 KEIYKTYQPLI-RSSLQFRLELDDTVPVPVHTDRLRFAQVISNFLNNANKFT-QNGYIAL 702

Query: 728 STTHTSNE-EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
                    EV + V D+G G+   EL    + F +         +G+GLGL ++K +++
Sbjct: 703 GCKVDKKHREVRIYVEDSGKGIDEKELMMIFERFYKTD----EFEQGSGLGLAISKVIIE 758

Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
              G+  + S   KG+   +I  L D    H
Sbjct: 759 RLSGRIKVHSEKGKGSCFTVILSLADAPENH 789


>gi|150008002|ref|YP_001302745.1| two-component system sensor histidine kinase [Parabacteroides
           distasonis ATCC 8503]
 gi|149936426|gb|ABR43123.1| two-component system sensor histidine kinase [Parabacteroides
           distasonis ATCC 8503]
          Length = 300

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 87/278 (31%), Positives = 143/278 (51%), Gaps = 16/278 (5%)

Query: 538 LLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
           ++ L I       S    + ++DI+E +Q++  L   +    +    K+ F+A +SHEIR
Sbjct: 20  IVRLLITNPDPGASPLLLVMLNDITEQRQDQLALMKVQ----EADKMKNAFIANMSHEIR 75

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TPL AI+GF+ ++              EY + I+++ +L+L ++ND+LD+SKIESG++N 
Sbjct: 76  TPLNAIVGFAHLVTETTNAS----EQREYFSIINKNCDLLLKLINDILDLSKIESGRLNY 131

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
           +   V L +   EA  +  L       L+  S A    R+  D   V+Q+ LN+LSNAI 
Sbjct: 132 NVSEVELRDICQEAYVVQSLKMTSDVALLYNSVAMPSVRLWIDPHRVEQVLLNLLSNAIK 191

Query: 718 FTPSGGQIIISTTHT-SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
           FT  G    IS  +   +  V + V DTG+G++  +LE   + F ++ +      +G GL
Sbjct: 192 FTSKG---FISLFYEVEDMFVRVSVMDTGIGISEEKLESVFERFVKLDDF----YQGAGL 244

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           GLP+ K +V+   G+  + S   KG+      PL  T 
Sbjct: 245 GLPICKMIVEQLGGEIGVRSELGKGSTFWFTLPLVVTD 282


>gi|145357869|ref|NP_196633.2| AHK5 (ARABIDOPSIS HISTIDINE KINASE 5); protein histidine kinase
           [Arabidopsis thaliana]
 gi|122227002|sp|Q3S4A7|AHK5_ARATH RecName: Full=Histidine kinase 5; AltName: Full=Arabidopsis
           histidine kinase 5; Short=AtHK5; AltName: Full=Protein
           AUTHENTIC HIS-KINASE 5; AltName: Full=Protein
           CYTOKININ-INDEPENDENT 2
 gi|74058448|gb|AAZ98829.1| cytokinin independent 2 [Arabidopsis thaliana]
 gi|332004205|gb|AED91588.1| histidine kinase 5 [Arabidopsis thaliana]
          Length = 922

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 87/421 (20%), Positives = 160/421 (38%), Gaps = 53/421 (12%)

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
           +E +    +   + ++     L  IL+     +   +++   L        L     +DI
Sbjct: 200 MESQSAPVQELTQNLKRAEGFLHFILQNAPIVMGHQDKDLRYLFIYNKYPSL---REQDI 256

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
           L K                +  E+L        E          K   + +         
Sbjct: 257 LGKTDVEIFHGGGVKESEDFKREVLEKGKASKREITFTTDLFGSKTFLIYVEPVYNKAGE 316

Query: 553 --CYSLTMHDISE-----------------WKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
               +    ++++                  K  +++L+    I E+    K   LA +S
Sbjct: 317 KIGINYMGMEVTDQVVKREKMAKLREDNAVRKAMESELNKTIHITEETMRAK-QMLATMS 375

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HEIR+PL+ ++G +E++   +     +    +  N +  SG+LVL ++ND+LD+SK+ESG
Sbjct: 376 HEIRSPLSGVVGMAEILSTTKL----DKEQRQLLNVMISSGDLVLQLINDILDLSKVESG 431

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNIL 712
            M L        E V   +        +K + +  + A+++P  ++ D+  ++QI  N++
Sbjct: 432 VMRLEATKFRPREVVKHVLQTAAASL-KKSLTLEGNIADDVPIEVVGDVLRIRQILTNLI 490

Query: 713 SNAIHFTPSGGQ-IIIST-----------------THTSNE------EVILRVRDTGVGM 748
           SNAI FT  G   I +                    H  N        +   V DTG+G+
Sbjct: 491 SNAIKFTHEGNVGIKLQVISEPSFVRDNALNADTEEHEQNGLTETSVWICCDVWDTGIGI 550

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
               L    K + Q       +  GTGLGL + K +V+   G+  + S  ++G+    I 
Sbjct: 551 PENALPCLFKKYMQASADHARKYGGTGLGLAICKQLVELMGGQLTVTSRVSEGSTFTFIL 610

Query: 809 P 809
           P
Sbjct: 611 P 611


>gi|53712586|ref|YP_098578.1| two-component system histidine kinase [Bacteroides fragilis YCH46]
 gi|52215451|dbj|BAD48044.1| two-component system histidine kinase [Bacteroides fragilis YCH46]
          Length = 792

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 90/391 (23%), Positives = 169/391 (43%), Gaps = 17/391 (4%)

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDG--IAIINREGIILSTNRAVSKLFGYPVE 490
                +  R N + +E    +L      ++DG  I++ N +G  +  +   ++L G    
Sbjct: 410 TRRRSLIERKNLKILEEAHKRLTL----SADGGQISLWNMQGSDIEFDDNYARLTGVEKR 465

Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE-KLLSLRI-IIKKL 548
              R  F  ++  +   +++ +   +      +          K+  +   LR   +K +
Sbjct: 466 KFKRTDFLEYVHPDDSQLLSSFYEALCKSPGVEIQRVRFRFDEKKGYQWYELRCRSLKDI 525

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                 +  M +I E  + +++L  AK++AEK    K  FL  +SHEIRTPL AI+GF+ 
Sbjct: 526 KGEMMLAGIMQNIQESVEREHQLIVAKQMAEKA-ELKQSFLNNMSHEIRTPLNAIVGFTN 584

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
           V+  +    +           I+ +  L+L ++ND+L+IS+++SG ++   +  ++ + V
Sbjct: 585 VLLGEGSEEIDPDEKASMLEIINHNNELLLKLINDVLEISRLDSGSLDFDMKEWNMTDIV 644

Query: 669 SEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIII 727
            E     Q       +  R    + +P  +  D     Q+  N L+NA  FT   G I +
Sbjct: 645 KEIYKTYQPLI-RSSLQFRLELDDTVPVPVHTDRLRFAQVISNFLNNANKFT-QNGYIAL 702

Query: 728 STTHTSNE-EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
                    EV + V D+G G+   EL    + F +         +G+GLGL ++K +++
Sbjct: 703 GCKVDKKHREVRIYVEDSGKGIDEKELMMIFERFYKTD----EFEQGSGLGLAISKVIIE 758

Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
              G+  + S   KG+   +I  L D    H
Sbjct: 759 RLSGRIKVHSEKGKGSCFTVILSLADAPENH 789


>gi|85703111|ref|ZP_01034215.1| phosphate regulon sensor histidine kinase, putative [Roseovarius
           sp. 217]
 gi|85672039|gb|EAQ26896.1| phosphate regulon sensor histidine kinase, putative [Roseovarius
           sp. 217]
          Length = 348

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 74/369 (20%), Positives = 152/369 (41%), Gaps = 30/369 (8%)

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
           L ++L        ++  +  IL+ N+    L G   + +  +     L       +   +
Sbjct: 4   LATVLAGIPLAAFLVGPQDRILAANQGARDLLG---QGLEGRHLLTALR---QPDVLEAI 57

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH 573
              L     + +   T  + ++     + +   +   +    +   D++E          
Sbjct: 58  EATLRDRQPRKITYQTSEAGRD-SSFQVHVGYVETLDARGTLVCFEDLTER--------- 107

Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
                E  +  + DF+A VSHE+RTPLTA++GF E ++              +   +   
Sbjct: 108 -----EHAAQMRRDFVANVSHELRTPLTALMGFIETLQG--PARHDQAAIDRFLGIMQSE 160

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693
              +  +V DLL +S++ES +     + V+L + +   +  ++  A ++   I       
Sbjct: 161 AARMERLVRDLLSLSRVESEERVRPRDEVNLGQVIGSVLHALRPLARDRACDISFDPPEG 220

Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE------VILRVRDTGVG 747
           +  +  +   ++Q+  N++ NAI +  +G  I I+   T  +       ++ RVRD G G
Sbjct: 221 M-VVRGNDDQLQQVFTNLIENAIKYGGTGNHITITLERTPRDATLRAPAIVARVRDQGPG 279

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           +    + +  + F ++   +     GTGLGL + K +V+ + G+  I STP +G    +I
Sbjct: 280 IDPLHIPRLTERFYRVDTHRSREMGGTGLGLAIVKHIVNRHRGRLRISSTPGEGAEFSVI 339

Query: 808 FPLYDTSHP 816
            P +D   P
Sbjct: 340 LPQWDRQEP 348


>gi|257085051|ref|ZP_05579412.1| sensory box histidine kinase [Enterococcus faecalis Fly1]
 gi|256993081|gb|EEU80383.1| sensory box histidine kinase [Enterococcus faecalis Fly1]
          Length = 584

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 72/363 (19%), Positives = 156/363 (42%), Gaps = 30/363 (8%)

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
            Q   +L+    G+ II+ +G +   N  + ++ G        K       +        
Sbjct: 246 EQFHELLDELMIGVFIIDTQGRLRLLNPKMQEMLGLSA-----KNMQSNYLEVIQDADLI 300

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY--SLTMHDISEWKQEKN 569
           +L   +  +     ++IT+        L L +       ++ Y      +D++  +Q + 
Sbjct: 301 HLIHQVVAEKNSLHQEITVTQGPTPLRLDLSLRYLDDQSANDYQVLGIAYDLTRVRQLE- 359

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
                          + DF++ VSHE++TP+T+++GF+E + +            ++ + 
Sbjct: 360 -------------KMQKDFVSNVSHELKTPVTSLLGFTETLIDG--AKEDPEVLDQFLHI 404

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           + +    +  ++ ++L++S+  S  +    + ++L++ ++E +S  Q     K++    +
Sbjct: 405 MQKDAQRLQQLIQEILELSR-GSATIPYAEQEITLEKFITEILSSYQQQLAAKQLK---T 460

Query: 690 FANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747
             + +P             I  N++ NAI ++   GQI IS     N+++ L V+DTG+G
Sbjct: 461 VVHGLPESQFFTKYELFYPIVKNLIENAIQYSQENGQITISYAIE-NQQLRLSVQDTGIG 519

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           ++  + E+  + F ++  ++     GTGLGL + +   +   GK  I S    GT   I 
Sbjct: 520 ISQKDQERIFERFYRVDKARSRHSGGTGLGLAIVQNYTELLGGKIAIDSHLGLGTTFTIT 579

Query: 808 FPL 810
            PL
Sbjct: 580 LPL 582


>gi|238764254|ref|ZP_04625206.1| Aerobic respiration control sensor protein arcB [Yersinia
           kristensenii ATCC 33638]
 gi|238697535|gb|EEP90300.1| Aerobic respiration control sensor protein arcB [Yersinia
           kristensenii ATCC 33638]
          Length = 488

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 75/356 (21%), Positives = 154/356 (43%), Gaps = 16/356 (4%)

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
                + ++  +   L S L+A+ D +   N +      NRA+  L G   + ++     
Sbjct: 142 HREQAQVELGQQSALLRSFLDASPDLVYYRNEDNEFSGCNRAMELLTGKSEKQLVGLTPK 201

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII--KKLPFSSCYSL 556
                +    +     ++   ++  T E+  +     +    LR +     +        
Sbjct: 202 EVYAPDIAEKVMETDEKVFRHNVSLTYEQWLVYPDGRKACFELRKVPFYDSVGKRHGLMG 261

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
              DI+E K+ ++ L +        S  K+ F++ +SHE+RTPL  I+G S ++ +    
Sbjct: 262 FGRDITERKRYQDALEN-------ASRDKTTFISTISHELRTPLNGIVGLSRILLDTEL- 313

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
              +   ++Y   I  S   + +I ND++++ K+E  K+ L  +P+     +++  +L  
Sbjct: 314 ---DSEQLKYLKTIHVSAITLGNIFNDIIEMDKLERRKVQLDNQPIDFTGFMADLENLSG 370

Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
           L    K +         +P  I+ D   ++QI  N++ NA+ FT  G +I++       +
Sbjct: 371 LLVQPKGLKFIMEPQLPLPEKIITDGTRLRQILWNLIGNAVKFTQQG-KIVVRVRREDTD 429

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ-QIRGEGTGLGLPLAKAMVDANMG 790
            +I  V D+G+G+   E +K    + Q+ +S       GTG+GL ++K +  +  G
Sbjct: 430 RLIFEVEDSGMGIPEDEQDKIFAMYYQVKDSNGGRPATGTGIGLAVSKRLAQSMGG 485



 Score = 40.0 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 14/124 (11%), Positives = 34/124 (27%), Gaps = 5/124 (4%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQN-TWYGKTTLWPIE 153
               +  +    G    +++G+   +V      +      + + R N +   +  L   +
Sbjct: 177 FSGCNRAMELLTGKSEKQLVGLTPKEVYAPDIAEKVMETDEKVFRHNVSLTYEQWLVYPD 236

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
           G       +L  +P Y    +  G  GFG           +   +   +  +        
Sbjct: 237 GRKACF--ELRKVPFYDSVGKRHGLMGFG--RDITERKRYQDALENASRDKTTFISTISH 292

Query: 214 HSSV 217
               
Sbjct: 293 ELRT 296



 Score = 39.6 bits (91), Expect = 2.5,   Method: Composition-based stats.
 Identities = 21/224 (9%), Positives = 53/224 (23%), Gaps = 10/224 (4%)

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
           V  L E       ++   +       E +    E+   +N     +++          + 
Sbjct: 77  VEQLEESRQRLSRLVDKLEVMRYRDLELNKQLTENIAQLNQEIVEREKAEKAHLQVVDKL 136

Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVD 358
            E + H           +   L    +D  P   +  +        N +  LLT      
Sbjct: 137 KEEMGH--REQAQVELGQQSALLRSFLDASPDLVYYRNEDNEFSGCNRAMELLTGKSEKQ 194

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
            +        L      + + A K +           +      + +             
Sbjct: 195 LVG-------LTPKEVYAPDIAEKVMETDEKVFRHNVSLTYEQWLVYPDGRKACFELRKV 247

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATS 462
              +   +     G   +  + +  +  +E       + +   S
Sbjct: 248 PFYDSVGKRHGLMGFGRDITERKRYQDALENASRDKTTFISTIS 291


>gi|158335032|ref|YP_001516204.1| two-component hybrid sensor and regulator histidine kinase
            [Acaryochloris marina MBIC11017]
 gi|158305273|gb|ABW26890.1| two-component hybrid sensor and regulator histidine kinase
            [Acaryochloris marina MBIC11017]
          Length = 1514

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 72/265 (27%), Positives = 134/265 (50%), Gaps = 15/265 (5%)

Query: 563  EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
            +  +  N+   +K+ A+  S  KSDFLA +SHE+RTPL AI+G+ E+++     P     
Sbjct: 841  QQAEFLNQAQQSKEAADAASQAKSDFLAHMSHELRTPLNAILGYVEIMQRD---PQLGET 897

Query: 623  YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
              E+   I RSG  +L ++ND+L++S+IE+G++ L      L   +     +++  A  +
Sbjct: 898  QTEHLGIIGRSGEHLLSLINDVLEMSRIEAGQLALTQVSFDLYRLLDSLQDMLEAKAKLQ 957

Query: 683  RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE------ 735
             + +    +  +P+ + AD   ++Q+ +N+L N +++T  G Q+++              
Sbjct: 958  GLQLYFERSATVPQFVFADEGKLRQVLINLLGNGLNYTEKG-QVLLQVDTPEQSGQPGRA 1016

Query: 736  -EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
             ++   V DTG G+   ++++  + F Q  +      EGTGLGLP+++  V    G   +
Sbjct: 1017 CQLTFAVMDTGPGIKASDVDQLFEAFTQTDSGY-RAQEGTGLGLPISRRFVQLMGGDIEV 1075

Query: 795  FSTPAKGTLIEIIFP--LYDTSHPH 817
             ST  +G+      P  L D +  H
Sbjct: 1076 DSTVGQGSTFRFTIPVTLADAAEVH 1100


>gi|94986195|ref|YP_605559.1| multi-sensor signal transduction histidine kinase [Deinococcus
            geothermalis DSM 11300]
 gi|94556476|gb|ABF46390.1| multi-sensor signal transduction histidine kinase [Deinococcus
            geothermalis DSM 11300]
          Length = 1140

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 93/712 (13%), Positives = 230/712 (32%), Gaps = 46/712 (6%)

Query: 115  GMRLCDVSDILHIDPNNHIGDLL-----KRQNTWYGKT-TLWPIEGTNLYVPIDLAA--L 166
            G+ +  +S+ +++DP      +L       + T  G+       EG    + +  +   +
Sbjct: 452  GVEVSPLSEPVYVDPEMWEKVVLNLLSNAFKFTLSGEVAVTLAQEGREAVLRVRDSGVGI 511

Query: 167  PIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVE-KEKYDIF 225
            P     R F            R        G+  +     L  +++  +    + +    
Sbjct: 512  PAAELGRLFE-----------RFHRVEGQRGRSFEGTGIGLALVREIVALHGGRVEVQSA 560

Query: 226  SQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTK 285
              Q     +R+    + L       +  L +     L   E +L            +   
Sbjct: 561  EGQGTTFTVRLPLGSAHLPPERLGAERTLSSTATGALPYVEEALRWLP---GEARPETLA 617

Query: 286  KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYA 344
            +     L     +      + +     A     ++      D       V     +L   
Sbjct: 618  EPEGAPLPGERGQVLLVDDNADLRDYIARLLAPQHDVRVVPDGQAALEAVAEALPDLVIT 677

Query: 345  NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
            +     L  +  +  +        L      +       V    +              +
Sbjct: 678  DVMMPRLDGFGLLRALRENPRTRELPVIMLSARAGEEARVQGLMA-GADDYLVKPFSARE 736

Query: 405  WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
               +    +      +     E      +E    +     R++     +    +      
Sbjct: 737  LLAKVGAHLALARLRREALAREQAYSAELEARVAER---AREVVQWRDRYEVAVRGAGAL 793

Query: 465  IAIINREGIILSTNRAVSKLFGYPVEDILRK---PFTVFLEQNTPSVMNHYLTEILSLDL 521
            I   +     +  + AV  + GY  +++  +        +     +   H +  +L+   
Sbjct: 794  IYDWDPATNGILYSGAVEHITGYRADELPGRLEDWTERLIHPEDRAAFAHEIERVLATGE 853

Query: 522  RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKI 577
               L    +    +  +L +      +   +         + D++E K+ +  L  A + 
Sbjct: 854  AFQLGFRVVRR--DGTVLDVEDDGYFMRDEAGRVRHMVGFVRDVTERKRAETALRQANEE 911

Query: 578  AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
              + ++    F    SH+++ P+  +  F+  +  +R+G + + R  +Y + ++     +
Sbjct: 912  LSRSNAELERFAYIASHDLQEPIRTVGSFA-GLLARRYGDVLDERGRQYLHTVELGALRM 970

Query: 638  LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697
              +V+DLL  S++ +         + L+  V EA++ + +   E    +      ++P +
Sbjct: 971  KTLVDDLLVFSRLNAAHPPFQL--LDLNVPVHEALARLDMTLQETGARVTV---GDLPTV 1025

Query: 698  LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV-ILRVRDTGVGMTNYELEKA 756
              D   + Q+  N+++NA+ F   G    ++        +  L V D G+G+      + 
Sbjct: 1026 YGDPSRLAQLFQNLIANAVKFRREGVPPEVTIGAARAGNLWHLTVSDNGIGIEQAYFTRI 1085

Query: 757  MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
             + F ++ +  + R EG+GLGL + + +V  + G+ ++ STP  G+      
Sbjct: 1086 FEMFQRLHS--RDRYEGSGLGLAICQKIVAQHGGQMWVESTPGAGSTFHFTL 1135



 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 99/591 (16%), Positives = 197/591 (33%), Gaps = 58/591 (9%)

Query: 275 FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF 334
            H    +Q   ++ F      S     +   +        + +    T   +       +
Sbjct: 2   PHPAPSDQNAAREIFAGTGEMSARMRAFDWSKTPLGPPDTWPQSLKTTVRILLTSRFAMW 61

Query: 335 -VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393
            ++  G  F+ N ++      K    +             ++ D+   +   +  +    
Sbjct: 62  MLWGEGLTFFCNDAYRPTLGVKEAWALGSPSD----RVWAEIWDDIGPRIQHVLETGEAT 117

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
                RL   +         TF     A+          +  E+ +  + +R++ +    
Sbjct: 118 WDEDLRLFLERSGYPEETYHTFSYSPLADDRGHITGMLCVVTEESERVVGERRLRMLRDL 177

Query: 454 ----------------LCSILEA----TSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
                           L + LEA        +  +  EG   +   A +   G   E + 
Sbjct: 178 AARSGEARTPAEVLAALRACLEAEAHDLPFALVYL-PEGEEEALQLAAA--VGLDPERL- 233

Query: 494 RKPFTVFLEQNTPS--------------VMNHYLTEILSLDLRQTLEKITL------GST 533
             P  +                           L ++ +    +   +  +      G T
Sbjct: 234 GLPLRMLGAAGDAPWPVQAVFNDLVPRVADLSALPDLPTGPWDRPPTQALVLPLAQAGQT 293

Query: 534 KEEKLLSLRIIIKK--LPFSSCYSLTMH-DISEWKQ---EKNKLSHAKKIAEKESSHKSD 587
           +   +    +   +        +       ++   +      +     +   +    K+ 
Sbjct: 294 RAAGVFVAALNPYRPLDEDYRGFLGLFVGQVTAALKGANAYEEERRRAEALAELDRAKTA 353

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           F A  SHE+RTPLT ++G  E +     GPL   R  E      R    +L +VN LLD 
Sbjct: 354 FFANASHELRTPLTLMLGPLEDLLTGDAGPLT-ARQQEVLEMAHRGSLRLLRLVNTLLDF 412

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707
           S++E+G+    + P  L    ++  S  +       +      +     +  D    +++
Sbjct: 413 SRLEAGRAQASYVPTDLATVTADLASSFRSAMERAGLRYGVEVSPLSEPVYVDPEMWEKV 472

Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
            LN+LSNA  FT SG ++ ++       E +LRVRD+GVG+   EL +  + F ++   +
Sbjct: 473 VLNLLSNAFKFTLSG-EVAVTLA-QEGREAVLRVRDSGVGIPAAELGRLFERFHRVEGQR 530

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
               EGTG+GL L + +V  + G+  + S   +GT   +  PL     P +
Sbjct: 531 GRSFEGTGIGLALVREIVALHGGRVEVQSAEGQGTTFTVRLPLGSAHLPPE 581



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/401 (11%), Positives = 101/401 (25%), Gaps = 27/401 (6%)

Query: 81  RTVRF-TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR 139
            T RF  W +   G     ++    T+G      +G     V   +  D    I  +L+ 
Sbjct: 54  LTSRFAMWMLWGEGLTFFCNDAYRPTLGVKEAWALGSPSDRVWAEIWDDIGPRIQHVLET 113

Query: 140 Q-NTW-YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG 197
              TW           G         +  P+       +G     +V             
Sbjct: 114 GEATWDEDLRLFLERSGYPEETYHTFSYSPLADDRGHITGM--LCVVTEESERVVGERRL 171

Query: 198 KRLDKKFSHLHEIK--KGHSSVEKEKYDIFSQQSPPPHLRMK---NKVSSLTEYYAHKDD 252
           + L    +   E +      +  +   +  +   P   + +     +   L        +
Sbjct: 172 RMLRDLAARSGEARTPAEVLAALRACLEAEAHDLPFALVYLPEGEEEALQLAAAVGLDPE 231

Query: 253 VLKTEKYPLLTSEESSLPEQEDF-----HTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
            L      L  + ++  P Q  F        +L+           +  ++     L+   
Sbjct: 232 RLGLPLRMLGAAGDAPWPVQAVFNDLVPRVADLSALPDLPTGPWDRPPTQALVLPLAQAG 291

Query: 308 HPSLSAYFDEGENLTPETVD--KCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIAG 364
               +  F    N      +  +  +  FV      L  AN       + +++ +++ A 
Sbjct: 292 QTRAAGVFVAALNPYRPLDEDYRGFLGLFVGQVTAALKGANAYEEERRRAEALAELDRAK 351

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSD---RTCIAASARLHTI-QWNRENSLAMTFIPFEK 420
             +             +  ++    D         +AR   + +     SL +  +    
Sbjct: 352 --TAFFANASHELRTPLTLMLGPLEDLLTGDAGPLTARQQEVLEMAHRGSLRLLRLVNTL 409

Query: 421 ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
            +       +        D       +        S +E  
Sbjct: 410 LDFSRLEAGRAQASYVPTDLATVTADLASS---FRSAMERA 447


>gi|288555625|ref|YP_003427560.1| multi-sensor hybrid histidine kinase [Bacillus pseudofirmus OF4]
 gi|288546785|gb|ADC50668.1| multi-sensor hybrid histidine kinase [Bacillus pseudofirmus OF4]
          Length = 539

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 84/251 (33%), Positives = 136/251 (54%), Gaps = 7/251 (2%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E +Q    L +A+  AEK    KSDFLA +SHE+RTPL +I+GFS+++      PL   +
Sbjct: 290 ELEQANTSLVYAQAQAEKAHKAKSDFLAMMSHELRTPLNSILGFSQLLHQDTGTPLSAQQ 349

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             +  + I +SG  +L ++ND+L + K+E+GK  + F+ V LD  V  A+  +  YA  K
Sbjct: 350 LAK-VDKILKSGRHLLTMINDILKLVKLENGKPFIEFQEVDLDAIVQAALREITPYAQLK 408

Query: 683 RILIRTS---FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
           ++ +        ++   I +D   ++Q+ LN+LSN++ +    G I IS   + +  V +
Sbjct: 409 KLKMNCEDLKLKSDQI-IYSDPVRLQQVLLNLLSNSVKYNREHGNITISYQVSEH-TVTV 466

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V DTGVG+++ E  K   PF +      +  EGTG+GL L K +V    GK  + S   
Sbjct: 467 NVEDTGVGISSVEQSKIFDPFYRTEEF-SMEAEGTGIGLSLVKQIVTEMQGKIGVESQLG 525

Query: 800 KGTLIEIIFPL 810
           +G+   I  P+
Sbjct: 526 EGSTFWIELPI 536


>gi|288942314|ref|YP_003444554.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
 gi|288897686|gb|ADC63522.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
          Length = 894

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 76/243 (31%), Positives = 124/243 (51%), Gaps = 10/243 (4%)

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
           + L+ A+  AE  +  KSDFLA +SHEIRTP+ A++G +E++         + +   +A 
Sbjct: 357 DALAEARDHAEAANRAKSDFLATMSHEIRTPMNAVLGMAELLLATDL----DAQQQRFAQ 412

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I RSG  +LDI+ND+LD+SKIE+GK+ L          + E        A+ K + +  
Sbjct: 413 TIHRSGGALLDIINDILDVSKIEAGKLTLAPHDFDPRLLIEETAQTFSESASAKGLRLTV 472

Query: 689 SFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT----SNEEVILRVRD 743
               ++P  +  D   ++QI  N++ NA+ FT  G +I +S + T        + + VRD
Sbjct: 473 RLPRDLPGLVHGDSTRLRQILFNLIGNALKFTEHG-EIRVSASLTIHADERMTLAIEVRD 531

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TG G+      +  + F Q   S   R  GTGLGL +++ +     G   + STP +G+ 
Sbjct: 532 TGSGIAPEFQAEIFEAFAQGDGSTTRRHGGTGLGLAISQRLAHLMDGSIRVESTPGQGSC 591

Query: 804 IEI 806
             +
Sbjct: 592 FTL 594


>gi|229520292|ref|ZP_04409718.1| sensor histidine kinase [Vibrio cholerae TM 11079-80]
 gi|229342658|gb|EEO07650.1| sensor histidine kinase [Vibrio cholerae TM 11079-80]
          Length = 736

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 68/256 (26%), Positives = 120/256 (46%), Gaps = 15/256 (5%)

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           L   K  A+  +  KS FLA +SHEIRTP+  ++G ++++      P    +  ++   +
Sbjct: 343 LEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILLKDELTP----KQRQHLTSL 398

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
             SG  ++ ++N++LD SKIE GK  L      L   +    S+      EK +  + + 
Sbjct: 399 YESGEHMMSLLNEILDYSKIEQGKFELDHSAFPLKSIIGSIKSIYSSLCVEKGLKFQLNS 458

Query: 691 A-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT---SNEEVILRVRDTGV 746
              +      D   ++QI  N+LSNA+ FT +G  + I  +         +I++V+DTG+
Sbjct: 459 EITDGRWYYGDKARLRQIIFNLLSNAVKFTEAGF-VAIGLSEESCDEENYLIIKVQDTGI 517

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+    L +  +PF Q  +    R  GTGLGL + K + +   G   + S   +G+  ++
Sbjct: 518 GIAQESLGRIFRPFEQAESHTTRRFGGTGLGLAIVKQIAELMNGTVLVQSEVGQGSCFKV 577

Query: 807 IF------PLYDTSHP 816
                   P+ +   P
Sbjct: 578 RVKLAITEPVTEDVKP 593


>gi|229529146|ref|ZP_04418536.1| sensor histidine kinase [Vibrio cholerae 12129(1)]
 gi|229332920|gb|EEN98406.1| sensor histidine kinase [Vibrio cholerae 12129(1)]
          Length = 736

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 68/256 (26%), Positives = 120/256 (46%), Gaps = 15/256 (5%)

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           L   K  A+  +  KS FLA +SHEIRTP+  ++G ++++      P    +  ++   +
Sbjct: 343 LEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILLKDELTP----KQRQHLTSL 398

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
             SG  ++ ++N++LD SKIE GK  L      L   +    S+      EK +  + + 
Sbjct: 399 YESGEHMMSLLNEILDYSKIEQGKFELDHSAFPLKSIIGSIKSIYSSLCVEKGLKFQLNS 458

Query: 691 A-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT---SNEEVILRVRDTGV 746
              +      D   ++QI  N+LSNA+ FT +G  + I  +         +I++V+DTG+
Sbjct: 459 EITDGRWYYGDKARLRQIIFNLLSNAVKFTEAGF-VAIGLSEESCDEENYLIIKVQDTGI 517

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+    L +  +PF Q  +    R  GTGLGL + K + +   G   + S   +G+  ++
Sbjct: 518 GIAQESLGRIFRPFEQAESHTTRRFGGTGLGLAIVKQIAELMNGTVLVQSEVGQGSCFKV 577

Query: 807 IF------PLYDTSHP 816
                   P+ +   P
Sbjct: 578 RVKLAITEPVTEDVKP 593


>gi|121727650|ref|ZP_01680753.1| sensor histidine kinase [Vibrio cholerae V52]
 gi|153828559|ref|ZP_01981226.1| sensor histidine kinase [Vibrio cholerae 623-39]
 gi|229523849|ref|ZP_04413254.1| sensor histidine kinase [Vibrio cholerae bv. albensis VL426]
 gi|254285229|ref|ZP_04960194.1| sensor histidine kinase [Vibrio cholerae AM-19226]
 gi|297579350|ref|ZP_06941278.1| sensor histidine kinase [Vibrio cholerae RC385]
 gi|121630037|gb|EAX62444.1| sensor histidine kinase [Vibrio cholerae V52]
 gi|148875954|gb|EDL74089.1| sensor histidine kinase [Vibrio cholerae 623-39]
 gi|150424501|gb|EDN16437.1| sensor histidine kinase [Vibrio cholerae AM-19226]
 gi|229337430|gb|EEO02447.1| sensor histidine kinase [Vibrio cholerae bv. albensis VL426]
 gi|297536944|gb|EFH75777.1| sensor histidine kinase [Vibrio cholerae RC385]
          Length = 736

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 68/256 (26%), Positives = 120/256 (46%), Gaps = 15/256 (5%)

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           L   K  A+  +  KS FLA +SHEIRTP+  ++G ++++      P    +  ++   +
Sbjct: 343 LEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILLKDELTP----KQRQHLTSL 398

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
             SG  ++ ++N++LD SKIE GK  L      L   +    S+      EK +  + + 
Sbjct: 399 YESGEHMMSLLNEILDYSKIEQGKFELDHSAFPLKSIIGSIKSIYSSLCVEKGLKFQLNS 458

Query: 691 A-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT---SNEEVILRVRDTGV 746
              +      D   ++QI  N+LSNA+ FT +G  + I  +         +I++V+DTG+
Sbjct: 459 EITDGRWYYGDKARLRQIIFNLLSNAVKFTEAGF-VAIGLSEESCDEENYLIIKVQDTGI 517

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+    L +  +PF Q  +    R  GTGLGL + K + +   G   + S   +G+  ++
Sbjct: 518 GIAQESLGRIFRPFEQAESHTTRRFGGTGLGLAIVKQIAELMNGTVLVQSEVGQGSCFKV 577

Query: 807 IF------PLYDTSHP 816
                   P+ +   P
Sbjct: 578 RVKLAITEPVTEDVKP 593


>gi|302341843|ref|YP_003806372.1| PAS/PAC sensor hybrid histidine kinase [Desulfarculus baarsii DSM
            2075]
 gi|301638456|gb|ADK83778.1| PAS/PAC sensor hybrid histidine kinase [Desulfarculus baarsii DSM
            2075]
          Length = 1157

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 100/768 (13%), Positives = 225/768 (29%), Gaps = 82/768 (10%)

Query: 92   HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP 151
             G +   +    +++G  A  + G+    +                    +   +     
Sbjct: 283  DGKIVHFNPAHGQSLGYGAADLEGVEFTRLLAPHDRRRVGGYHRRRLAGESAPEEFVADI 342

Query: 152  IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE-- 209
            ++      P+ L +     + R+        ++   R      A     +     + +  
Sbjct: 343  VDVDGQIKPMSLRSQLARHQGRQL-------VLTAMRPLKGHDAETADSNGLTGAVLDNL 395

Query: 210  --------IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
                    +  G      + Y             +   +  L      +   L   +   
Sbjct: 396  PVGLAVFALDSGLCIYMNDNYGRVVGWPKAELPSVSKILGRLFPDREERRKRLADVRPGP 455

Query: 262  LTSEESSLPEQEDF-HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
             +              T +  +         + ++           +           E 
Sbjct: 456  ASDGRQKRQWNNIAVQTRDHGRRYISTMSIAVPDHGVIISTVWDVDSQRRAERALAASEE 515

Query: 321  LTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEI-----------AGGLSTL 369
               + V+       +   G +  ANPS          +               A  L+  
Sbjct: 516  KYRQLVENAGEAIVIVQDGAVRLANPSAARFFGLPPAELAGQNIAGLIHPDDRAKALALY 575

Query: 370  LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
                  +   A  P  + R D       +R+  ++W    +                   
Sbjct: 576  AQHQSAAAPPAAGPHRMLRRDLGPGWVESRVAPVEWEGRPA------------------- 616

Query: 430  QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
                  +  +    +  ++     L +++ A+   +  +N  G ++  + A   +FG+  
Sbjct: 617  VLACLTDVTEAVQAQESLKERNETLQAMINASPLAVIGLNHRGEVVLWSGAAQAMFGWDA 676

Query: 490  EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
            E++L + F         +    +L           L        K+ + + + + +  + 
Sbjct: 677  EEVLGR-FNPLAAPQERAEFERHLARARDGRQA--LHLEMTCKAKDGRPVDMTVHVAPVR 733

Query: 550  FSSC----YSLTMHDISEWKQEKNKLSHAKKIA--EKESSHKSDFLARVSHEIRTPLTAI 603
             S          + D+SE ++++   +  ++     +         + V+HE    L AI
Sbjct: 734  GSDGRAGSLLCLVEDVSERRRQERVWARLEEHLSQNRRLEAVGVLASGVAHEFNNILAAI 793

Query: 604  IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
            IG+ E +  +          + + +   ++     ++V  +L      S   +     V 
Sbjct: 794  IGYGE-LAKEDLQEGRIDSPLHFLDNQMKAAERGRELVRQILAF----SRHGSGRRRRVD 848

Query: 664  LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG- 722
            L   +++ + L++       + +R           AD   ++Q+ LN+ +NA+     G 
Sbjct: 849  LAPVLAQQVRLLRAVVPA-NVALRAELCEGPLSAEADPAQIQQVLLNLTTNAVEAFDGGD 907

Query: 723  GQIIIST--------------THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
            G II  T                     + LRV D G GM    LE+A +PF       +
Sbjct: 908  GSIIFQTDVAAFDEADAAAPPGLAPGRYLRLRVDDDGPGMPQGVLERACEPFYTTKKQNR 967

Query: 769  IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
                  GLGL  A  ++ A+ G+  + S   +G+ +E   PL D   P
Sbjct: 968  NA----GLGLAEAHGVISAHGGRLILHSRLERGSRVEAFIPLCDKPLP 1011



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/368 (9%), Positives = 90/368 (24%), Gaps = 11/368 (2%)

Query: 190 DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH 249
             D   + + L      +     G +    E  ++  +  P   L             A 
Sbjct: 12  VEDEFIVAQHLRASLESMGYEVAGLADSAAEAVELAERLRPDLVLMDIFLAGPSDGIEAA 71

Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
                +  +  +  +  + L +           +        ++         L      
Sbjct: 72  MTIRRRLGRPVVFLT--AQLDDDIIPRAAAAQPHGYLNKPFKIKEVQAVVETALHKA--- 126

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
           ++ A    G+      +D      +         A+  FL       +            
Sbjct: 127 AMEAELAAGQERLRLILDATSDGAWDCD----LRADRVFLSEKGLALLGRDGQDPHDLAA 182

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
                  D+      +     +       +L  +  + +                     
Sbjct: 183 WLGLVHPDDLPSLEAVAQALRQDAPTLDVQLRLLGADGQWRFLHCRGRAVAWRADGAAGR 242

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
             G   +    + ++ ++     +   +   TSD + +I  +G I+  N A  +  GY  
Sbjct: 243 VVGTLTDITAQKADQAELAEARERFMHLARFTSDALLLI-HDGKIVHFNPAHGQSLGYGA 301

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
            D+    FT  L  +    +  Y    L+       E +      + ++  + +  +   
Sbjct: 302 ADLEGVEFTRLLAPHDRRRVGGYHRRRLA-GESAPEEFVADIVDVDGQIKPMSLRSQLAR 360

Query: 550 FSSCYSLT 557
                 + 
Sbjct: 361 HQGRQLVL 368



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/279 (13%), Positives = 84/279 (30%), Gaps = 21/279 (7%)

Query: 333 FFVYSHGNLFYANPSFLLLTKY-------KSVDDIEIAGGLSTLLDAPKL----SDNNAI 381
             V     +     + L    Y        + + +E+A  L   L    +      +   
Sbjct: 10  LIVEDEFIVAQHLRASLESMGYEVAGLADSAAEAVELAERLRPDLVLMDIFLAGPSDGIE 69

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
             + + R     +     L     +     A    P    N+  +      +    +   
Sbjct: 70  AAMTIRRRLGRPVVF---LTAQLDDDIIPRAAAAQPHGYLNKPFKIKEVQAVVETALHKA 126

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
             + ++     +L  IL+ATSDG    +     +  +     L G   +D       + L
Sbjct: 127 AMEAELAAGQERLRLILDATSDGAWDCDLRADRVFLSEKGLALLGRDGQDPHDLAAWLGL 186

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR-----IIIKKLPFSSCYSL 556
                      + + L  D   TL+        + +   L      +  +    +     
Sbjct: 187 VHPDDLPSLEAVAQALRQDAP-TLDVQLRLLGADGQWRFLHCRGRAVAWRADGAAGRVVG 245

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
           T+ DI+  K ++ +L+ A++     +   SD L  + H+
Sbjct: 246 TLTDITAQKADQAELAEARERFMHLARFTSDALLLI-HD 283


>gi|260545291|ref|ZP_05821032.1| sensory box histidine kinase/response regulator [Brucella abortus
           NCTC 8038]
 gi|260564042|ref|ZP_05834528.1| sensory box histidine kinase/response regulator [Brucella
           melitensis bv. 1 str. 16M]
 gi|260761820|ref|ZP_05874163.1| multi-sensor hybrid histidine kinase [Brucella abortus bv. 2 str.
           86/8/59]
 gi|261325131|ref|ZP_05964328.1| multi-sensor hybrid histidine kinase [Brucella neotomae 5K33]
 gi|265994957|ref|ZP_06107514.1| multi-sensor hybrid histidine kinase [Brucella melitensis bv. 3
           str. Ether]
 gi|265998171|ref|ZP_06110728.1| multi-sensor hybrid histidine kinase [Brucella ceti M490/95/1]
 gi|265999465|ref|ZP_05466499.2| sensory box histidine kinase/response regulator [Brucella
           melitensis bv. 2 str. 63/9]
 gi|260096698|gb|EEW80573.1| sensory box histidine kinase/response regulator [Brucella abortus
           NCTC 8038]
 gi|260154058|gb|EEW89150.1| sensory box histidine kinase/response regulator [Brucella
           melitensis bv. 1 str. 16M]
 gi|260672252|gb|EEX59073.1| multi-sensor hybrid histidine kinase [Brucella abortus bv. 2 str.
           86/8/59]
 gi|261301111|gb|EEY04608.1| multi-sensor hybrid histidine kinase [Brucella neotomae 5K33]
 gi|262552639|gb|EEZ08629.1| multi-sensor hybrid histidine kinase [Brucella ceti M490/95/1]
 gi|262766070|gb|EEZ11859.1| multi-sensor hybrid histidine kinase [Brucella melitensis bv. 3
           str. Ether]
 gi|263094112|gb|EEZ18034.1| sensory box histidine kinase/response regulator [Brucella
           melitensis bv. 2 str. 63/9]
          Length = 906

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 99/626 (15%), Positives = 208/626 (33%), Gaps = 51/626 (8%)

Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271
           +G      + Y   +  +    +R  ++V +     +     L       L+++E     
Sbjct: 153 RGQIVYANQAYARMTGATDADGIRPLDQVLASEPAASDAIYRLTNAVRDGLSAQEEVRIS 212

Query: 272 QEDFHTINLNQY--TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE-----NLTPE 324
                  N +      +     L+  ++     ++ +         ++            
Sbjct: 213 GGLSRGANGSLAPVWYRIKARALEGGAEFKGPLVAWQVADISEERAEQERFFQELQEAIN 272

Query: 325 TVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
            +D  P  FF     G + Y N +               +  L+ ++    ++       
Sbjct: 273 HLDHAPAGFFSANPAGRIIYLNATLAEWLGVDLTQFTPGSLTLNDIVAGSGMA------L 326

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
           +   +++      +     +      SLA+ F    +  +         I  +  +   +
Sbjct: 327 IKAVKAEPGTSRNTVIDLDLIKRNGQSLAVRFYHRVQTARDGMPGTTRTIVLDRAEGDDS 386

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG--YPVEDILRKPFTVFL 501
                   ++      +    IA ++ EG  L TN     +F      + I R+     +
Sbjct: 387 SVAQRSAEVRFTRFFNSAPMAIAAVDAEGHTLRTNARFLDIFSGVVDRDAIDRRVKLENV 446

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF----SSCYSLT 557
                    +                 T+    EE+ +   +                ++
Sbjct: 447 VHERDRETFNKALAAAFAGQASISPVDTVLPGNEERHIRFYMSPVTDLGGEAAEEAAVIS 506

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
             + +E K  +N+++ ++K+              ++H+    LTAII  S+++       
Sbjct: 507 AVETTEQKALENQMAQSQKM-----QAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNH--R 559

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
             +P + +  N I ++ N    +V  LL  S+    +  L  E + L + +++ + ++  
Sbjct: 560 ASDPSFPDIMN-IKQNANRAASLVRQLLAFSR----RQTLRPEVLDLTDVLAD-LRMLLA 613

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT------- 730
               K I ++     ++  + ADL   +Q+A+N+  NA    P GGQI + T        
Sbjct: 614 RLVGKDIELKIDHGRDLWPVKADLGQFEQVAVNLAVNARDAMPEGGQITLRTRNIPAADA 673

Query: 731 -------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
                      + V+  V DTG G+    LEK  +PF          G+GTGLGL +   
Sbjct: 674 AKLHYRDLPEADYVVFEVEDTGTGIPADVLEKIFEPFFTTK----EVGKGTGLGLSMVYG 729

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFP 809
           ++    G  Y  S   KGT  +I  P
Sbjct: 730 IIKQTGGFIYCDSEVGKGTTFKIFLP 755



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/238 (11%), Positives = 66/238 (27%), Gaps = 7/238 (2%)

Query: 319 ENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
           ++L    +D  P    +    G + YAN ++  +T     D I     +  L   P  SD
Sbjct: 133 QDLAHSFMDTQPEGTVISDPRGQIVYANQAYARMTGATDADGIRPLDQV--LASEPAASD 190

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
                   +                 +    +   + +    +A +         +  + 
Sbjct: 191 AIYRLTNAVRDGLSAQEEVRISGGLSRGANGSLAPVWYRIKARALEGGAEFKGPLVAWQV 250

Query: 438 VDTRINKRKMEIEVMQLC-SI--LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
            D    + + E    +L  +I  L+    G    N  G I+  N  +++  G  +     
Sbjct: 251 ADISEERAEQERFFQELQEAINHLDHAPAGFFSANPAGRIIYLNATLAEWLGVDLTQFTP 310

Query: 495 KPFT-VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
              T   +   +   +   +           ++   +    +   +     ++     
Sbjct: 311 GSLTLNDIVAGSGMALIKAVKAEPGTSRNTVIDLDLIKRNGQSLAVRFYHRVQTARDG 368



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 47/420 (11%), Positives = 103/420 (24%), Gaps = 38/420 (9%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD--ILHIDPNNHIGDLLKRQNTWYGKT 147
           D  G +   ++   +  G      I   L  V        D    + + ++   +   + 
Sbjct: 151 DPRGQIVYANQAYARMTGATDADGI-RPLDQVLASEPAASDAIYRLTNAVRDGLSAQEEV 209

Query: 148 TL-----WPIEGTNLYVPIDLAALPIYSRNREFSG-FRGFGIVHVNRVDNDPRALGKRLD 201
            +         G+   V   + A  +     EF G    + +  ++    +     + L 
Sbjct: 210 RISGGLSRGANGSLAPVWYRIKARALEGGA-EFKGPLVAWQVADISEERAEQERFFQELQ 268

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR------MKNKVSSLTEYYAHKDDVLK 255
           +  +HL     G  S       I+   +    L           ++           ++K
Sbjct: 269 EAINHLDHAPAGFFSANPAGRIIYLNATLAEWLGVDLTQFTPGSLTLNDIVAGSGMALIK 328

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN--NSKESFEYLSHRNHPSLSA 313
             K    TS  + +                     T ++          L        S 
Sbjct: 329 AVKAEPGTSRNTVIDLDLIKRNGQSLAVRFYHRVQTARDGMPGTTRTIVLDRAEGDDSSV 388

Query: 314 YFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLT-KYKSVDDIEIAGGLSTLLD 371
                E       +  P+    V + G+    N  FL +       D I+    L  +  
Sbjct: 389 AQRSAEVRFTRFFNSAPMAIAAVDAEGHTLRTNARFLDIFSGVVDRDAIDRRVKLENV-V 447

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
             +  +         +    +       L     N E  +     P              
Sbjct: 448 HERDRETFNKALAAAFAGQASISPVDTVL---PGNEERHIRFYMSPVTDLGGEAAEEAAV 504

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSI----------LEATSDGIAIINREGIILSTNRAV 481
               E  + +  + +M  +  ++ ++                 I + +    +L TN   
Sbjct: 505 ISAVETTEQKALENQM-AQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSD---LLLTNHRA 560



 Score = 48.5 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 45/134 (33%), Gaps = 12/134 (8%)

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY-LT 514
           S ++   +G  I +  G I+  N+A +++ G    D   +P    L     +    Y LT
Sbjct: 138 SFMDTQPEGTVISDPRGQIVYANQAYARMTGATDAD-GIRPLDQVLASEPAASDAIYRLT 196

Query: 515 EILSLDLRQTLEKITLG---STKEEKLLSLRIIIKKLPFSSC-------YSLTMHDISEW 564
             +   L    E    G         L  +   IK               +  + DISE 
Sbjct: 197 NAVRDGLSAQEEVRISGGLSRGANGSLAPVWYRIKARALEGGAEFKGPLVAWQVADISEE 256

Query: 565 KQEKNKLSHAKKIA 578
           + E+ +     + A
Sbjct: 257 RAEQERFFQELQEA 270


>gi|255972660|ref|ZP_05423246.1| predicted protein [Enterococcus faecalis T1]
 gi|255963678|gb|EET96154.1| predicted protein [Enterococcus faecalis T1]
          Length = 506

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 73/364 (20%), Positives = 160/364 (43%), Gaps = 32/364 (8%)

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
            Q   +L+    G+ II+ +G +   N  + ++ G        K       +        
Sbjct: 165 EQFHELLDELMIGVFIIDTQGRLRLLNPKMQEMLGLSA-----KNMQSNYLEVIQDADLI 219

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY--SLTMHDISEWKQEKN 569
           +L   +  +     ++IT+        L L +       ++ Y      +D++  +Q + 
Sbjct: 220 HLIHQVVAEKNSLHQEITVTQGPTPLRLDLSLRYLDDQSANDYQVLGIAYDLTRVRQLE- 278

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE-YAN 628
                          + DF++ VSHE++TP+T+++GF+E + +   G   +P+ ++ + +
Sbjct: 279 -------------KMQKDFVSNVSHELKTPVTSLLGFTETLID---GAKEDPKVLDQFLH 322

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            + +    +  ++ ++L++S+  S  +    + ++L++ ++E +   Q     K++    
Sbjct: 323 IMQKDAQRLQQLIQEILELSR-GSATIPYAEQEITLEKFITEILGSYQQQLAAKQLK--- 378

Query: 689 SFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
           +  + +P             I  N++ NAI ++   GQI IS     N+++ L V+DTG+
Sbjct: 379 TVVHGLPESQFFTKYELFYPIVKNLIENAIQYSQKNGQITISYAIE-NQQLRLSVQDTGI 437

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G++  + E+  + F ++  ++     GTGLGL + +   +   GK  I S    GT   I
Sbjct: 438 GISQKDQERIFERFYRVDKARSRHSGGTGLGLAIVQNYTELLGGKIAIDSHLGLGTTFTI 497

Query: 807 IFPL 810
             PL
Sbjct: 498 TLPL 501


>gi|167746498|ref|ZP_02418625.1| hypothetical protein ANACAC_01208 [Anaerostipes caccae DSM 14662]
 gi|167653458|gb|EDR97587.1| hypothetical protein ANACAC_01208 [Anaerostipes caccae DSM 14662]
          Length = 1315

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 93/473 (19%), Positives = 182/473 (38%), Gaps = 36/473 (7%)

Query: 367  STLLDAPKLSDNNAIKPVMLYRS----DRTCI----AASARLHTIQWNRENSLAMTFIPF 418
            +     P    ++     ML       DR            +  +Q +   + A      
Sbjct: 677  NAFCVPPHRGRHSEWTAYMLRSRVVPRDREQYKNGLEPEKMMSRLQKDGPYTFAFCISDD 736

Query: 419  EKANQFPENMPQNGIEP---------EDVDTRINKRKMEIEVM---QLCSILEATSDGIA 466
            +   +                     +  D+   ++ +   +    +L + +  +S  + 
Sbjct: 737  KGDIRTKNMTVSAVDLRLGRVCLSRSDITDSIREQQGLLHMIAYTFELAAFINLSSRSLT 796

Query: 467  IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
            +  RE ++ +      + +   +   +    T   ++   +            +     +
Sbjct: 797  LYTRESVLDNLQPHYVENYDRTILKFVEHHGTSEHKEEARTQFRIETMTERLREKPNGYD 856

Query: 527  KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW----KQEKNKLSHAKKIAEKES 582
             +        +      ++          L   D++E     +Q K +L HA   AE+ +
Sbjct: 857  FLFSYEGDNGERFKQINVLWGDVNHRTLCLVRADVTEMLTAERQAKKRLEHALASAEEAN 916

Query: 583  SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
              KSDFL+ +SH+IRTP+ AI+G +  + +   G   + R   Y + I+ S   +L ++N
Sbjct: 917  KAKSDFLSAMSHDIRTPMNAIMGMT-TLASAYLG--DDERVAGYLDKIEVSSRHLLSLIN 973

Query: 643  DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN-NIPRILADL 701
            D+LD+SKIE  ++ L+   VS+ + + +   ++   A E  + +       N      D 
Sbjct: 974  DILDMSKIERAQITLNLSKVSIPKLLDQLSVMILSQAEEAGLTLSIRAEGVNHEDFYGDP 1033

Query: 702  RSVKQIALNILSNAIHFTPSGGQIIISTTHTS----NEEV--ILRVRDTGVGMTNYELEK 755
              + QI +N+LSNA+ FT  GG + +             V     VRDTG+GM    + K
Sbjct: 1034 LRINQILINLLSNAVKFTNKGGMVELLAEEVETEGSAGRVSYHFTVRDTGIGMPEEFVSK 1093

Query: 756  AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
              +PF +  +      EGTGLGL + K ++D   GK  + S   +G++  +  
Sbjct: 1094 IFEPFSR--SGNAAHIEGTGLGLSITKGLIDLMGGKISVESWINEGSVFRVEL 1144



 Score = 78.5 bits (192), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 32/271 (11%), Positives = 87/271 (32%), Gaps = 20/271 (7%)

Query: 316 DEGENLTPETVDKCPIPFFVYS--HGNL--FYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
           ++      E ++  P    VY    G +   + N SF         ++        T   
Sbjct: 13  EKIRREVQEALEMIPGGVCVYLYKEGRIYPVFRNSSFYETLGC--FEEYTGEISRETAFQ 70

Query: 372 APKLSD-NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
                D     + V       T ++ + R+     + +       I     +    ++  
Sbjct: 71  GIHREDLPEVKEKVNRLLRKGTALSHTCRIFN---DNQGRYRWVHIDGSAEHGEDGSVLF 127

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI--INREGIILSTNRAVSKLFGYP 488
             +  +  +    K ++     Q+  I+     G+AI  ++     +  +  VS+L GY 
Sbjct: 128 YAVYRDVSEQIQLKEELVRSNEQMQDIINLIPGGVAIYKVSDFFETVYFSDGVSELSGYS 187

Query: 489 V---EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
                +++++       +    ++     E++        E       +  +++ + + +
Sbjct: 188 ALEYRELIKRDAVEMTCREDREMIISKAGEVVQTKGTS--EFEFRKKHRNGQIVWVHVQM 245

Query: 546 KKLPFSSC---YSLTMHDISEWKQEKNKLSH 573
           K +             H+I++ K+ + +  H
Sbjct: 246 KWIGEEDGCPLVLCVFHNITDLKEAQLEKEH 276



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/508 (8%), Positives = 133/508 (26%), Gaps = 52/508 (10%)

Query: 92  HGYL--KEISEELPKTIG---NYAFKMIGMRLCDVSDILHI-DPNNHIGDLLKRQNTWYG 145
            G +     +    +T+G    Y  ++             + +    +  LL++      
Sbjct: 37  EGRIYPVFRNSSFYETLGCFEEYTGEISRETAFQGIHREDLPEVKEKVNRLLRKGTALS- 95

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
            T     +    Y  + +     +  +     +    +          +    R +++  
Sbjct: 96  HTCRIFNDNQGRYRWVHIDGSAEHGEDGSVLFY---AVYRDVSEQIQLKEELVRSNEQMQ 152

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS----------SLTEYYAHKDDVLK 255
            +  +  G  ++ K      +         +    +          ++        +++ 
Sbjct: 153 DIINLIPGGVAIYKVSDFFETVYFSDGVSELSGYSALEYRELIKRDAVEMTCREDREMII 212

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
           ++   ++ ++ +S   +      N            +              N   L    
Sbjct: 213 SKAGEVVQTKGTS-EFEFRKKHRNGQIVWVHVQMKWIGEEDGCPLVLCVFHNITDLKEAQ 271

Query: 316 DEGENLTPETVDKCPIPFFVYS--HGNLF--YANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
            E E+     ++  P     Y          + +   ++++ +  ++  E     +    
Sbjct: 272 LEKEH----LINSIPGGIASYRVEGERFIPEFYSDGVMMISGHTRME-FEAMVRRNAFDV 326

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
             +      ++           +  S R+     +         I      +    + + 
Sbjct: 327 IYEPDRKRVLEAAKTALISGEVLDVSYRM--YHKDG------NLIWIHLNGRRMGPLAEK 378

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG-IILSTNRAVSKLFGYPVE 490
                       + ++         I   T+DGI +I+R    +L  N +   LF    +
Sbjct: 379 MRFYAVFTGMSAEARL------FQEIANETADGIYVIDRSNFELLYANES-LNLF-MEKK 430

Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
           +   +     L           + +        + E        + ++ S R        
Sbjct: 431 ECTGQKCFKVLHGKDSPCEYCNIIQY----EPGSEEHEIKIPGSD-RVYSARCHKTVWNG 485

Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIA 578
              Y   + DI++  +E+ ++ +  K  
Sbjct: 486 IPAYVQYVKDITQTVREQERIRNQYKDL 513


>gi|17987230|ref|NP_539864.1| sensory transduction protein kinase [Brucella melitensis bv. 1 str.
           16M]
 gi|17982903|gb|AAL52128.1| sensory transduction protein kinase [Brucella melitensis bv. 1 str.
           16M]
          Length = 767

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 99/626 (15%), Positives = 208/626 (33%), Gaps = 51/626 (8%)

Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271
           +G      + Y   +  +    +R  ++V +     +     L       L+++E     
Sbjct: 14  RGQIVYPNQAYARMTGATDADGIRPLDQVLASEPAASDAIYRLTNAVRDGLSAQEEVRIS 73

Query: 272 QEDFHTINLNQY--TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE-----NLTPE 324
                  N +      +     L+  ++     ++ +         ++            
Sbjct: 74  GGLSRGANGSLAPVWYRIKARALEGGAEFKGPLVAWQVADISEERAEQERFFQELQEAIN 133

Query: 325 TVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
            +D  P  FF     G + Y N +               +  L+ ++    ++       
Sbjct: 134 HLDHAPAGFFSANPAGRIIYLNATLAEWLGVDLTQFTPGSLTLNDIVAGSGMA------L 187

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
           +   +++      +     +      SLA+ F    +  +         I  +  +   +
Sbjct: 188 IKAVKAEPGTSRNTVIDLDLIKRNGQSLAVRFYHRVQTARDGMPGTTRTIVLDRAEGDDS 247

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG--YPVEDILRKPFTVFL 501
                   ++      +    IA ++ EG  L TN     +F      + I R+     +
Sbjct: 248 SVAQRSAEVRFTRFFNSAPMAIAAVDAEGHTLRTNARFLDIFSGVVDRDAIDRRVKLENV 307

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF----SSCYSLT 557
                    +                 T+    EE+ +   +                ++
Sbjct: 308 VHERDRETFNKALAAAFAGQASISPVDTVLPGNEERHIRFYMSPVTDLGGEAAEEAAVIS 367

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
             + +E K  +N+++ ++K+              ++H+    LTAII  S+++       
Sbjct: 368 AVETTEQKALENQMAQSQKM-----QAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNH--R 420

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
             +P + +  N I ++ N    +V  LL  S+    +  L  E + L + +++ + ++  
Sbjct: 421 ASDPSFPDIMN-IKQNANRAASLVRQLLAFSR----RQTLRPEVLDLTDVLAD-LRMLLA 474

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT------- 730
               K I ++     ++  + ADL   +Q+A+N+  NA    P GGQI + T        
Sbjct: 475 RLVGKDIELKIDHGRDLWPVKADLGQFEQVAVNLAVNARDAMPEGGQITLRTRNIPAADA 534

Query: 731 -------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
                      + V+  V DTG G+    LEK  +PF          G+GTGLGL +   
Sbjct: 535 AKLHYRDLPEADYVVFEVEDTGTGIPADVLEKIFEPFFTTK----EVGKGTGLGLSMVYG 590

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFP 809
           ++    G  Y  S   KGT  +I  P
Sbjct: 591 IIKQTGGFIYCDSEVGKGTTFKIFLP 616



 Score = 65.8 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/231 (10%), Positives = 62/231 (26%), Gaps = 7/231 (3%)

Query: 326 VDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
           +D  P    +    G + Y N ++  +T     D I     +  L   P  SD       
Sbjct: 1   MDTQPEGTVISDPRGQIVYPNQAYARMTGATDADGIRPLDQV--LASEPAASDAIYRLTN 58

Query: 385 MLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK 444
            +                 +    +   + +    +A +         +  +  D    +
Sbjct: 59  AVRDGLSAQEEVRISGGLSRGANGSLAPVWYRIKARALEGGAEFKGPLVAWQVADISEER 118

Query: 445 RKMEIEVMQLC-SI--LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT-VF 500
            + E    +L  +I  L+    G    N  G I+  N  +++  G  +        T   
Sbjct: 119 AEQERFFQELQEAINHLDHAPAGFFSANPAGRIIYLNATLAEWLGVDLTQFTPGSLTLND 178

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
           +   +   +   +           ++   +    +   +     ++     
Sbjct: 179 IVAGSGMALIKAVKAEPGTSRNTVIDLDLIKRNGQSLAVRFYHRVQTARDG 229



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 47/420 (11%), Positives = 103/420 (24%), Gaps = 38/420 (9%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD--ILHIDPNNHIGDLLKRQNTWYGKT 147
           D  G +   ++   +  G      I   L  V        D    + + ++   +   + 
Sbjct: 12  DPRGQIVYPNQAYARMTGATDADGI-RPLDQVLASEPAASDAIYRLTNAVRDGLSAQEEV 70

Query: 148 TL-----WPIEGTNLYVPIDLAALPIYSRNREFSG-FRGFGIVHVNRVDNDPRALGKRLD 201
            +         G+   V   + A  +     EF G    + +  ++    +     + L 
Sbjct: 71  RISGGLSRGANGSLAPVWYRIKARALEGGA-EFKGPLVAWQVADISEERAEQERFFQELQ 129

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR------MKNKVSSLTEYYAHKDDVLK 255
           +  +HL     G  S       I+   +    L           ++           ++K
Sbjct: 130 EAINHLDHAPAGFFSANPAGRIIYLNATLAEWLGVDLTQFTPGSLTLNDIVAGSGMALIK 189

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN--NSKESFEYLSHRNHPSLSA 313
             K    TS  + +                     T ++          L        S 
Sbjct: 190 AVKAEPGTSRNTVIDLDLIKRNGQSLAVRFYHRVQTARDGMPGTTRTIVLDRAEGDDSSV 249

Query: 314 YFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLT-KYKSVDDIEIAGGLSTLLD 371
                E       +  P+    V + G+    N  FL +       D I+    L  +  
Sbjct: 250 AQRSAEVRFTRFFNSAPMAIAAVDAEGHTLRTNARFLDIFSGVVDRDAIDRRVKLENV-V 308

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
             +  +         +    +       L     N E  +     P              
Sbjct: 309 HERDRETFNKALAAAFAGQASISPVDTVL---PGNEERHIRFYMSPVTDLGGEAAEEAAV 365

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSI----------LEATSDGIAIINREGIILSTNRAV 481
               E  + +  + +M  +  ++ ++                 I + +    +L TN   
Sbjct: 366 ISAVETTEQKALENQM-AQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSD---LLLTNHRA 421



 Score = 44.6 bits (104), Expect = 0.069,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 44/132 (33%), Gaps = 12/132 (9%)

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY-LTEI 516
           ++   +G  I +  G I+  N+A +++ G    D   +P    L     +    Y LT  
Sbjct: 1   MDTQPEGTVISDPRGQIVYPNQAYARMTGATDAD-GIRPLDQVLASEPAASDAIYRLTNA 59

Query: 517 LSLDLRQTLEKITLG---STKEEKLLSLRIIIKKLPFSSC-------YSLTMHDISEWKQ 566
           +   L    E    G         L  +   IK               +  + DISE + 
Sbjct: 60  VRDGLSAQEEVRISGGLSRGANGSLAPVWYRIKARALEGGAEFKGPLVAWQVADISEERA 119

Query: 567 EKNKLSHAKKIA 578
           E+ +     + A
Sbjct: 120 EQERFFQELQEA 131


>gi|153824523|ref|ZP_01977190.1| sensor protein TorS [Vibrio cholerae MZO-2]
 gi|149742077|gb|EDM56106.1| sensor protein TorS [Vibrio cholerae MZO-2]
          Length = 984

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 71/238 (29%), Positives = 117/238 (49%), Gaps = 8/238 (3%)

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
           ++ AE+ S  KS FLA +SHEIRTP+  ++G + ++++             Y   I+RSG
Sbjct: 460 RQQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLQDTTLTST----QQHYVQVINRSG 515

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
             +L I+ND+LD SKIE+G + +H     L   V E   L+Q  A EK I +     +++
Sbjct: 516 RSLLAILNDVLDYSKIEAGHLEIHHTHFDLYRLVRETHELMQSRAREKGITLTYHIDDDV 575

Query: 695 PRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRVRDTGVGMTNYE 752
            +    D   + Q+  N++ N I FT  G  +I +       + +   V D+G+G+   E
Sbjct: 576 TQYWQGDEIRIGQVLNNLVGNGIKFTEQGEVRIRVRLAL-DGQGIRFAVEDSGIGIAEEE 634

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
                  F Q    +  +  GTGLGL +++ +V A  G+  + S   +G+      PL
Sbjct: 635 QATLFDAFTQADAGR-RKLGGTGLGLAISRKLVQAMGGELQLASQLGQGSCFWFTLPL 691


>gi|315180156|gb|ADT87070.1| sensor histidine kinase/response regulator [Vibrio furnissii NCTC
           11218]
          Length = 579

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 88/354 (24%), Positives = 153/354 (43%), Gaps = 20/354 (5%)

Query: 475 LSTN-RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
              N     ++       +               + +   + +++    QT + + L   
Sbjct: 92  EWFNGDKFQRVLDGECIILFEPSKLDEFRNLNHFLKDQINSALVTGIRAQTSDSVLLLLG 151

Query: 534 KEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK-------NKLSHAKKIAEKESSHKS 586
             +   SL        F       ++DI   ++ +        +L  A+++AE+ +  KS
Sbjct: 152 TRKGQFSLETKSTLSRFRPLLERAINDIEHKEELQKLVDLKTRELKVAQQLAEQANQSKS 211

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
            FLA +SHE+RTPL A++G  +++++       +    +    ++ S  L+L I+ND+LD
Sbjct: 212 QFLAMMSHELRTPLNAVLGLIDLLRDD-----SDAYQQDMLEQMENSAELLLVIINDILD 266

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILADLRSVK 705
           +S+IESG   L    +SL   +  A+      A  K I      +         D   + 
Sbjct: 267 LSRIESGHFELQRHWISLSRKLQHALEYHSQVAQAKDITFNVKASICEQFEYWVDSVRLT 326

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           QI  NI+ NAI FT  G  + +S   T+ + + + V+D+G+G+ N  +E    PF Q   
Sbjct: 327 QILFNIIGNAIKFTHHGF-VDVSL-VTARDRLEIEVKDSGIGIDNERIEHLFSPFIQADT 384

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL----YDTSH 815
           S      GTGLGL + K +V+   G   + S   +G+L  I  PL     +TSH
Sbjct: 385 SITRNYGGTGLGLAITKHLVELMGGSITVSSKLGEGSLFTISIPLQSRSSETSH 438


>gi|331663934|ref|ZP_08364844.1| sensor protein EvgS [Escherichia coli TA143]
 gi|331059733|gb|EGI31710.1| sensor protein EvgS [Escherichia coli TA143]
          Length = 1197

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 88/419 (21%), Positives = 162/419 (38%), Gaps = 12/419 (2%)

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
            W+  +                  +    +       ++ +  +E ++    ++ ++  +
Sbjct: 528 TWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISFRKALSDSLPN 587

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--NTPSVMNHYLTEILSLDL 521
              ++N +G ++S N A    F          P         +  S  +    E      
Sbjct: 588 PTYVVNWQGNVISHNSAFEHYFTADYYKNAMLPLENSDSPFKDVFSNAHEVTAETKENRT 647

Query: 522 RQTLEKIT-LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
             T       G  K        +        + Y     DI+E +   + L   +  A  
Sbjct: 648 IYTQVFEIDNGIEKRCINHWHTLCNLPASDHAVYICGWQDITETRDLIHALEVERNKAIN 707

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            +  KS FLA +SHEIRTP+++I+GF E++       L   + +E  +    +G  +L +
Sbjct: 708 ATVAKSQFLATMSHEIRTPISSIMGFLELLS---GSGLSKEQRVEAISLAYATGQSLLGL 764

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILA 699
           + ++LD+ KIESG   L  + V +   V          A  K I +  S        +  
Sbjct: 765 IGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPEHYLVKI 824

Query: 700 DLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMTNYELEKA 756
           D ++ KQ+  N+LSNA+ FT  G  +I  S  +  +   ++   + D+G G++  E ++ 
Sbjct: 825 DPQAFKQVLSNLLSNALKFTTEGAVKITTSLVNIDDNHAVIKMTIMDSGSGLSQEEQQQL 884

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            K + Q   S   +  G+GLGL + K ++    G   + S P  GT   I  P+  T  
Sbjct: 885 FKRYSQT--SAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVEITQQ 941


>gi|301023585|ref|ZP_07187348.1| response regulator receiver domain protein [Escherichia coli MS
           69-1]
 gi|300396952|gb|EFJ80490.1| response regulator receiver domain protein [Escherichia coli MS
           69-1]
          Length = 1197

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 88/419 (21%), Positives = 162/419 (38%), Gaps = 12/419 (2%)

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
            W+  +                  +    +       ++ +  +E ++    ++ ++  +
Sbjct: 528 TWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISFRKALSDSLPN 587

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--NTPSVMNHYLTEILSLDL 521
              ++N +G ++S N A    F          P         +  S  +    E      
Sbjct: 588 PTYVVNWQGNVISHNSAFEHYFTADYYKNAMLPLENSDSPFKDVFSNAHEVTAETKENRT 647

Query: 522 RQTLEKIT-LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
             T       G  K        +        + Y     DI+E +   + L   +  A  
Sbjct: 648 IYTQVFEIDNGIEKRCINHWHTLCNLPASDHAVYICGWQDITETRDLIHALEVERNKAIN 707

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            +  KS FLA +SHEIRTP+++I+GF E++       L   + +E  +    +G  +L +
Sbjct: 708 ATVAKSQFLATMSHEIRTPISSIMGFLELLS---GSGLSKEQRVEAISLAYATGQSLLGL 764

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILA 699
           + ++LD+ KIESG   L  + V +   V          A  K I +  S        +  
Sbjct: 765 IGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPEHYLVKI 824

Query: 700 DLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMTNYELEKA 756
           D ++ KQ+  N+LSNA+ FT  G  +I  S  +  +   ++   + D+G G++  E ++ 
Sbjct: 825 DPQAFKQVLSNLLSNALKFTTEGAVKITTSLVNIDDNHAVIKMTIMDSGSGLSQEEQQQL 884

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            K + Q   S   +  G+GLGL + K ++    G   + S P  GT   I  P+  T  
Sbjct: 885 FKRYSQT--SAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVEITQQ 941


>gi|296272592|ref|YP_003655223.1| integral membrane sensor hybrid histidine kinase [Arcobacter
           nitrofigilis DSM 7299]
 gi|296096766|gb|ADG92716.1| integral membrane sensor hybrid histidine kinase [Arcobacter
           nitrofigilis DSM 7299]
          Length = 765

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 78/263 (29%), Positives = 140/263 (53%), Gaps = 8/263 (3%)

Query: 547 KLPFSSCYSLTMHDISE-WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
           ++           D ++   + ++++  A + A   +  KS FLAR+SHE+RTPL AI+G
Sbjct: 281 EVGDMIGSVRIFKDNTKKLIESEHQIKLAMEEANSANKAKSIFLARMSHELRTPLNAILG 340

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
           FS ++K                N I RSG  +L+I+N++L++SKIE+GK+ +  +  +L 
Sbjct: 341 FSNILKKSMNAT---QEEKNNLNIIKRSGEHLLNIINEILELSKIEAGKIEIIPKVFNLK 397

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQ 724
           E + +  S+      EK +  +    +N+P ++  D   ++QI +N+LSN++ FT  G +
Sbjct: 398 ELIEDINSIFAFRCKEKGLEFKIILDDNLPEVVKMDELRLRQILINLLSNSLKFTNEG-E 456

Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
           I +   +  ++++   ++DTG+G+ + +L++  KPF QI +    +  GTGLGL + K +
Sbjct: 457 ISLYL-YEKSQKLFFEIKDTGIGIESKDLKRVFKPFEQIKHDDYNKN-GTGLGLSITKEL 514

Query: 785 VDANMGKFYIFSTPAKGTLIEII 807
           V    G  Y  S    GT     
Sbjct: 515 VTLMNGSIYAKSKVNVGTQFYFS 537


>gi|257093441|ref|YP_003167082.1| integral membrane sensor hybrid histidine kinase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257045965|gb|ACV35153.1| integral membrane sensor hybrid histidine kinase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 681

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 78/256 (30%), Positives = 138/256 (53%), Gaps = 7/256 (2%)

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            ++    +  A+  AE+ S  KSDF++R+SHE+RTPL AI+GF++V+  +         +
Sbjct: 281 LRKTWTAMRVARDEAERASRAKSDFVSRMSHELRTPLNAILGFAQVLDREPL----QASH 336

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            +Y   I RSG  +L++VN +LD++KIE+G++ L        + ++E   +V   A +K 
Sbjct: 337 QDYVRLIMRSGQHLLELVNQVLDLAKIEAGRLTLEAIVFDFRQTIAEVGGIVAQRAADKG 396

Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           +      A ++P  ++ D   ++Q+ +N+ +NA+ FT +G  + ++        ++  +R
Sbjct: 397 LDFIPKVAEDLPSHVIGDPTRLRQVLINLTANAVKFTEAGS-VELAIDAHDQ-RLLFSIR 454

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG+GM    L +   PFGQ   S   +  GTGLGL +A+ +V A  G+  + S P  G+
Sbjct: 455 DTGIGMDEAALGRLFLPFGQGDESITRKYGGTGLGLMIARELVQAMGGEIEVDSKPGAGS 514

Query: 803 LIEIIFPLYDTSHPHD 818
                 PL+    P +
Sbjct: 515 CFRFSLPLHLADAPRE 530


>gi|260220402|emb|CBA27903.1| hypothetical protein Csp_A04610 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 597

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 77/268 (28%), Positives = 125/268 (46%), Gaps = 10/268 (3%)

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
           Y  T+ DI + ++  ++L HAK  AE+ S  KS+FL+ +SHEIRTP+  ++G  E+ +  
Sbjct: 186 YEGTVRDIEQQRKIDSELRHAKVNAERLSQVKSEFLSNMSHEIRTPMNGVLGMLELAR-- 243

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
             G         Y      S N +L I+N++LD SK+E+  M L      L   + E   
Sbjct: 244 --GSSDAQEQQHYLATAQNSANALLKILNEILDYSKLEAHHMQLESSAWDLRALLEELKV 301

Query: 674 LVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH- 731
           +      +K++         +P  ++ D    +QI  N+L NA+ FT  GG + +S    
Sbjct: 302 VYTNRCVQKQLEFALHLDAQVPPCVVGDALRTRQILTNLLENAVKFT-EGGHVHLSVRVG 360

Query: 732 ---TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
               + + ++  V+DTG+G+   +     K F Q   S   R  GTGLGL +   +    
Sbjct: 361 KYSKAKDTLVFEVKDTGIGVPLNQQASIFKAFEQADASTTRRFGGTGLGLSICAELARLM 420

Query: 789 MGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
            G   + S P +G+   +  PL     P
Sbjct: 421 QGALTVRSAPGQGSTFCLEVPLQPALEP 448


>gi|323340182|ref|ZP_08080446.1| two component system histidine kinase [Lactobacillus ruminis ATCC
           25644]
 gi|323092373|gb|EFZ34981.1| two component system histidine kinase [Lactobacillus ruminis ATCC
           25644]
          Length = 462

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 83/361 (22%), Positives = 153/361 (42%), Gaps = 25/361 (6%)

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
            +     S++E+ + G+ + +R   I   N  + ++   P +    +PF           
Sbjct: 115 QQTRDYLSLMESMTSGVVVFDRNKEITLYNHLLEEILVLPPKP-RGRPFYAVFHDAKLVS 173

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568
           M     E    D     E  T G  K   + ++ + + +  +S       +DI+  ++  
Sbjct: 174 MAQKAYETKE-DQHMIWEDQTEGGIKYYDVHAIYVPLSRHHYS--VMCLFNDITSERRV- 229

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
                        +  + DF+A V HE++TP+TAI GFSE +              E+  
Sbjct: 230 -------------AQMQRDFVANVGHELKTPVTAIRGFSETLLEGALD--DKETASEFVK 274

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I      + D++ND+L +SKI++ K +  F  + L + +   +   +    EK+I    
Sbjct: 275 IILEQSKQLTDLINDILSLSKIDASKGD-TFVKIKLRKFIERIVQQFEPAIGEKKISFID 333

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748
             A ++  I+ D + ++ I  N++ NA+ +   GG I +S     NE   L ++DTG G+
Sbjct: 334 KIAPDV-EIVCDEKKLQHIISNLMQNAVRYNKKGGSIEVSAVIFENEWCFL-IKDTGQGI 391

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            + +L +  + F +   S+      TGLGL + K  VD+  G   + S P   T   +  
Sbjct: 392 KHEDLGRIFERFYRGDKSRSQEE--TGLGLSIVKEYVDSLSGMIDVTSVPNAWTEFMVTL 449

Query: 809 P 809
           P
Sbjct: 450 P 450


>gi|254413515|ref|ZP_05027285.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196179622|gb|EDX74616.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 501

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 69/378 (18%), Positives = 155/378 (41%), Gaps = 14/378 (3%)

Query: 444 KRKMEIEVMQ--LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
           +  ++       L ++L    DG+ +++++  I   N+    L  +   D   +      
Sbjct: 129 EVALQRYKRDQFLSAVLWGIDDGVIVVDQDCRIQCMNQVAELLTEWQFTDAKNRELKDVF 188

Query: 502 EQNTPSVMNHY-----LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CY 554
           +               L       + +T + + +  T ++ +++      +         
Sbjct: 189 QIIDVQTQQPVNNSVTLAFKEDRLVDRTDDHVLITKTGQQIVIADSAAPIRDNQGDLAGV 248

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
            L   D+ + KQ +  L       ++ +  +  F+  VSHE RTPL +II  S  +    
Sbjct: 249 VLVFQDMRDRKQAEAALRQQLAQEQQLNQFQQQFIHTVSHEYRTPL-SIIQASTFLIETD 307

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
              + +         I ++   ++ ++ D+L   + E+G++ L   P+ ++    + I  
Sbjct: 308 SSSVRSENKRVNCQRIKQAVKYMVGLLEDVLTFGQAEAGQLLLDPMPLDVNLFCQQLIDE 367

Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
            QL A++ +  I  S          D + ++ I  N+L+NA+ ++P    + ++ T   +
Sbjct: 368 YQLIASD-QAKITWSSCGTSQTAYLDQKILQLIVRNLLTNALKYSPENSSVYLTLTCEDD 426

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
             + + V+D G+G+   +     +PF +  N+  +R  G+G+GL + K  VD + G   +
Sbjct: 427 -RLTVEVKDNGIGIPPEDQPCIFEPFRRASNTGTVR--GSGMGLAIVKKAVDLHGGTLSV 483

Query: 795 FSTPAKGTLIEIIFPLYD 812
            S    GT   ++ P  +
Sbjct: 484 ESVLGIGTRFTVVLPFPE 501


>gi|75910179|ref|YP_324475.1| Cache sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
 gi|75703904|gb|ABA23580.1| Cache sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
          Length = 811

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 80/266 (30%), Positives = 140/266 (52%), Gaps = 18/266 (6%)

Query: 556 LTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
           LT+  I+   + +     +L  +K+ A+  +  KS+FLA +SHE+RTPL  I+G +++++
Sbjct: 308 LTITMITVLWRVQAFEQAQLKKSKEAADLANHAKSEFLANMSHELRTPLNGILGCAQILQ 367

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
                P    +   + N I++ G+ +L ++ND+LD++KIE+ K+ LH E V     +   
Sbjct: 368 RSSKLP---EQEQHHINIIEQCGSHLLTLINDILDLAKIEAKKLELHGEDVHFPSFIQGI 424

Query: 672 ISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
             + Q+ A +K IL     A+N+P  +  D + ++Q+ LN+L NAI FT  G Q+ +   
Sbjct: 425 AEICQIRAAQKDILFIYEPASNLPTWVHIDAKRLRQVLLNLLGNAIKFTDHG-QVKLKVE 483

Query: 731 HTS--------NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
                      N  +   + DTG+G+T+ EL K   PF Q+   ++ + EGTGLGL + +
Sbjct: 484 TIEESSNQKPVNHRIRYCIEDTGIGITDAELSKIFLPFEQV-GEKKRQTEGTGLGLAITR 542

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIF 808
            +V       ++ S   KG+      
Sbjct: 543 QLVQMMGSDIHVTSQVGKGSTFWFEL 568


>gi|119469631|ref|ZP_01612500.1| putative membrane bound sensor or esterase [Alteromonadales
           bacterium TW-7]
 gi|119446878|gb|EAW28149.1| putative membrane bound sensor or esterase [Alteromonadales
           bacterium TW-7]
          Length = 936

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 79/250 (31%), Positives = 127/250 (50%), Gaps = 6/250 (2%)

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           Q   +L    +     +  KS FLA VSHEIRTPLTAI+G ++ + N  + P    +  +
Sbjct: 455 QRTAELQDVAQELRAANDVKSQFLANVSHEIRTPLTAILGQTDDLMNGLYEP---EQLKD 511

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
               I R  N +  ++ND+LD+SKIE+ ++ L+     + + V++  ++    A  K + 
Sbjct: 512 ELAIIQRHSNHLKSLINDVLDLSKIEANRLELNVSCFDMVQLVNDVHAMFNPQAKAKNLR 571

Query: 686 IRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744
           +       +      D+  VKQI +N+ +NAI FT SG Q++I+   T    ++L V+DT
Sbjct: 572 LVLENKVGDEFYTRLDIMRVKQILINLCANAIKFTQSG-QVLIALNKTEQG-IVLIVKDT 629

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+GM + +L+   + F Q  NS   R  GTGLGL L++ +     G   + S   KG+  
Sbjct: 630 GIGMNSSQLKLIFEYFSQADNSISRRFGGTGLGLSLSQQLASMMGGYISVQSEYKKGSQF 689

Query: 805 EIIFPLYDTS 814
               P    S
Sbjct: 690 SFFLPCAQVS 699


>gi|75675405|ref|YP_317826.1| Signal transduction histidine kinase [Nitrobacter winogradskyi
           Nb-255]
 gi|74420275|gb|ABA04474.1| signal transduction histidine kinase [Nitrobacter winogradskyi
           Nb-255]
          Length = 536

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 103/249 (41%), Positives = 152/249 (61%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I E +Q K     A+  AE  +  KS FLA++SHE+RTPL AI+GFSEV+K++ FG    
Sbjct: 240 IGELEQAKAISDEARHRAESANVAKSRFLAQMSHELRTPLNAILGFSEVMKSEIFGEHAV 299

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
             Y  Y+  I  SG  +L+++N++LD+S+IE+G+  L+ E VSL   V+E   L++L A+
Sbjct: 300 AVYKTYSADIHNSGVHLLNLINEILDLSRIEAGRYELNEEAVSLVHVVTECHHLLKLRAS 359

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
            + I I   F   +PRI  D R+ +QI LN+LSNAI FTP GG+I +    T++    L 
Sbjct: 360 NRGITIHEIFEQGMPRIWGDERATRQIVLNLLSNAIKFTPQGGEIWLKVGWTASGGQYLS 419

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V+D G G+   E+   +  FGQ  NS +   +G GLGLP+AK+++D + G F + S    
Sbjct: 420 VKDNGSGIAEDEIPIVLASFGQGSNSIKSAEQGAGLGLPIAKSLIDMHGGTFTLRSKLRV 479

Query: 801 GTLIEIIFP 809
           GT + + FP
Sbjct: 480 GTEVIVTFP 488


>gi|295428067|ref|ZP_06820699.1| sensor protein srrB [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|295128425|gb|EFG58059.1| sensor protein srrB [Staphylococcus aureus subsp. aureus EMRSA16]
          Length = 583

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 62/375 (16%), Positives = 151/375 (40%), Gaps = 39/375 (10%)

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
            +   +   +        S++ +  +G+  IN    I+ +N+  + +             
Sbjct: 242 TEIEEHVDALSTSKNIRDSLINSMVEGVLGINESRQIILSNKMANDIMD----------- 290

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK---KLPFSSCY 554
              ++++  + +   + +       +  +          +   +        +    S  
Sbjct: 291 --NIDEDAKAFLLRQIEDTFKSKQTEMRDLEM-----NTRFFVVTTSYIDKIEQGGKSGV 343

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
            +T+ D++                      K DF+A VSHE+RTP++ + G++E I +  
Sbjct: 344 VVTVRDMT--------------NEHNLDQMKKDFIANVSHELRTPISLLQGYTESIVDGI 389

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     E    +      +  +VN+LL+++++++  ++L+ E   +   + +    
Sbjct: 390 VTE--PDEIKESLAIVLDESKRLNRLVNELLNVARMDAEGLSLNKEVQPIAALLDKMKIK 447

Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
            +  A++  + +  ++         D+  + Q+  N++ NA  +T  G +I I+     +
Sbjct: 448 YRQQADDLGLNMTFNYCKKRVWTY-DMDRMDQVLTNLIDNASRYTKPGDEIAITCDENES 506

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
           E++ L ++DTG G+    L++    F ++  ++    +GTGLGL + K +++ + G   +
Sbjct: 507 EDI-LYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQGTGLGLFICKMIIEEHGGSIDV 565

Query: 795 FSTPAKGTLIEIIFP 809
            S   KGT   I  P
Sbjct: 566 KSELGKGTTFIIKLP 580


>gi|269839398|ref|YP_003324090.1| multi-sensor signal transduction histidine kinase [Thermobaculum
            terrenum ATCC BAA-798]
 gi|269791128|gb|ACZ43268.1| multi-sensor signal transduction histidine kinase [Thermobaculum
            terrenum ATCC BAA-798]
          Length = 1171

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 105/847 (12%), Positives = 255/847 (30%), Gaps = 128/847 (15%)

Query: 91   AHGYLKEISEELPKTIGNYAFKMIG-------MRLCDVSDILHIDPNNHIGDLLKRQNTW 143
              G + + + ++   +G+   + +            +    L  +       +L  +   
Sbjct: 330  PTGRIVQGNGQVEAILGHPVLETLQVADYSKWHGYHEDGTPLGAEEWPLARAVLHGETVN 389

Query: 144  YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRG-FGIVHVNRVDNDPRALGKRLDK 202
              +      +G ++++ +  +A P+ + +R+  G    F  V   R   + RA     ++
Sbjct: 390  GQELLYRRPDGQDIWLSV--SAAPVRNSDRQLIGAVATFQDVTARRRSEEERARLLEREQ 447

Query: 203  KFSHLHEIKKGHSSVEKEKYDIFSQQ--------SPPPHLRMKNKV-------------- 240
                  E         +E+  +  +          P       +                
Sbjct: 448  AARAEAERIAQALWRSEERLRLALEAGRMGTWDYEPATDRMSLSSTMEEMHGLPVGGFRG 507

Query: 241  --SSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE 298
                        D +   +          S   +     +       +       + S  
Sbjct: 508  GFEDFLRLVYPADRLRLRDALDSAARHGGSFHSEYRLAAVEDGFRWIEIRGRVFYDPSGT 567

Query: 299  SFEYLSHRNHPSLSAYFDEGENLTPET----------------VDKCPIPFFVY------ 336
                       +     ++      E                 + + P+PF         
Sbjct: 568  PVRLSGVSVDVTDRRRAEDSLRFLAEAERVLGSSLDYDSTLQSIAQLPVPFLADWCALDL 627

Query: 337  ---SHGNLFYANPSF--------LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM 385
                  +    +  +        +   +       +   G S  L  P+++     + + 
Sbjct: 628  QDADSHSRRVVSARWDPASSQVVVEEWEGGESPVWQAVVGKSQPLLLPEVTQELLDRYLP 687

Query: 386  LYRSDRTCIAASARL---HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
                     +  AR      +      +  + F+       + E+     ++        
Sbjct: 688  NAEQQEMVASLGARSVMGVPLATRGRVNGVLWFLITTSERIYTEDDLALALDLAQRAALA 747

Query: 443  NKRK-----MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG----------- 486
             +       ++ +  QL  + EA     A  + + I+ + +     + G           
Sbjct: 748  VENARLYDDLQEQAGQLQQLAEAALVINAATSLDAILRAVSETARNILGAHLGLAYLAAD 807

Query: 487  ---------YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR----QTLEKITLGST 533
                         +   +             +   L E  +  L     Q  E+      
Sbjct: 808  WELEKALASLSCSERYSQWAGWTPSPTLLRSLVGLLGESRTARLTLAEMQADERCLRLLE 867

Query: 534  KEEKLLSLR---IIIKKLPFSSCYSLT-----------MHD------ISEWKQEKNKLSH 573
             E     LR   +        +   +            + D      I++          
Sbjct: 868  GEHGDPPLRGLLLAALTDREGNRMGMVVLADKRQGEFTLRDQAMLLQIAQLASVATDNFQ 927

Query: 574  AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN--QRFGPLGNPRYIEYANYID 631
              +  ++    +S+FLA VSH+++ PL ++ G +++++   +R   L   R IE  + ID
Sbjct: 928  LLRQTQEAVQMRSEFLAMVSHDLKNPLVSVKGMAQLLRRQLERGDCLDVQRLIEGLDKID 987

Query: 632  RSGNLVLDIVNDLLDISKIESGK-MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
                 +   +N+LLD ++++ G+ + L   P  L     + +       ++  + +RT  
Sbjct: 988  SVATRMSAQINELLDTARLQMGEPLELDVRPFDLVSLARQLVEQHARTTSKHNVELRTDL 1047

Query: 691  ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EVILRVRDTGVG 747
               +     D   ++++  N+LSNAI ++P GG ++++      +     ++ V D G+G
Sbjct: 1048 GELVGE--WDQLRIERVLSNLLSNAIKYSPEGGDVVVTVRTEEADGRSWAVVDVTDQGLG 1105

Query: 748  MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
            +   EL +    F +  N +     GTG+GL   + +V+ + G+  + S   +G+   + 
Sbjct: 1106 IPARELPRIFDRFYRASNVEGR-IGGTGVGLASVRMIVEQHGGRISVTSQEGQGSTFSVW 1164

Query: 808  FPLYDTS 814
             PL   +
Sbjct: 1165 LPLPGAA 1171



 Score = 91.6 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 52/462 (11%), Positives = 127/462 (27%), Gaps = 54/462 (11%)

Query: 123 DILHIDPNNHIGDLLKRQN--TWYGKTTLW--PIEGTNLYVPIDLAALPIYSRNREFSGF 178
               +     +  L + ++   W  ++      I    L+VP+ L +L +  R + F+G 
Sbjct: 1   MPDSLSDPERLSALSRIRDLGAWPRESLDRLARIAARLLHVPVALVSL-VDDREQFFAGQ 59

Query: 179 RGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKN 238
            G           +P AL +R     + L      H  +  E   I              
Sbjct: 60  VG---------LEEPVALERR-----TPLSHSFCKHVVLTDEPLVI-------------- 91

Query: 239 KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE 298
           + +       H   +   +          +   +       ++   ++     +   S  
Sbjct: 92  EDARRHPLVMHNPAIRDLKVVAYCGVPIRASNGEVLGSLCAIDHEPRQWTQEDVDTLSDL 151

Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSV 357
           +   ++      L    +   +     +       +V   G    + N +   + +Y+  
Sbjct: 152 ASAVMAELRLQELLLNAERERSEREALLQAVSDGIYVIDTGGACTFVNQAATAMLRYEEG 211

Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
           + +        +            +   ++R+  T          +           +  
Sbjct: 212 ELL-GKYMHGLVHHRRPDGTEYPEEECPVHRTLLTGQPFRNVEEFLWRKDGTGFPAEYSS 270

Query: 418 FEKANQFPENMPQNGIEPEDVDTRINKR-------KMEIEVMQLCSILEATSDGIAIIN- 469
                   + +       +       +R       +++ E  +L +ILE+   G+ I   
Sbjct: 271 SPIIIG-GKIVGAAVTFRDITQRHALERVRREFLQEIDDERRRLETILESLPVGVLIAEA 329

Query: 470 REGIILSTNRAVSKLFGYPVEDILR-----KPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
             G I+  N  V  + G+PV + L+     K      +          L   +       
Sbjct: 330 PTGRIVQGNGQVEAILGHPVLETLQVADYSKWHGYHEDGTPLGAEEWPLARAVLHG-ETV 388

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDIS 562
             +  L    + + + L +    +  S         T  D++
Sbjct: 389 NGQELLYRRPDGQDIWLSVSAAPVRNSDRQLIGAVATFQDVT 430



 Score = 80.8 bits (198), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 39/317 (12%), Positives = 89/317 (28%), Gaps = 26/317 (8%)

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTK 353
           ++ +        R+  +      +        +   P+           +    F     
Sbjct: 6   SDPERLSALSRIRDLGAWPRESLDRLARIAARLLHVPVALVSLVDDREQF----FAGQVG 61

Query: 354 YKSVDDIEIAGGLSTLL-------DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
            +    +E    LS          D P + ++    P++++      +   A        
Sbjct: 62  LEEPVALERRTPLSHSFCKHVVLTDEPLVIEDARRHPLVMHNPAIRDLKVVAYCGVPIRA 121

Query: 407 --RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM----EIEVMQLCSILEA 460
              E   ++  I  E      E++         V   +  +++    E E  +  ++L+A
Sbjct: 122 SNGEVLGSLCAIDHEPRQWTQEDVDTLSDLASAVMAELRLQELLLNAERERSEREALLQA 181

Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP-----SVMNHYLTE 515
            SDGI +I+  G     N+A + +  Y   ++L K     +    P           +  
Sbjct: 182 VSDGIYVIDTGGACTFVNQAATAMLRYEEGELLGKYMHGLVHHRRPDGTEYPEEECPVHR 241

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLS 572
            L         +  L   K+            +         ++T  DI++    +    
Sbjct: 242 TLLTGQPFRNVEEFLWR-KDGTGFPAEYSSSPIIIGGKIVGAAVTFRDITQRHALERVRR 300

Query: 573 HAKKIAEKESSHKSDFL 589
              +  + E       L
Sbjct: 301 EFLQEIDDERRRLETIL 317



 Score = 65.8 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 40/423 (9%), Positives = 112/423 (26%), Gaps = 67/423 (15%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN------HIGDLLKR 139
            + ID  G    +++     +     +++G  +  +      D          +   L  
Sbjct: 186 IYVIDTGGACTFVNQAATAMLRYEEGELLGKYMHGLVHHRRPDGTEYPEEECPVHRTLLT 245

Query: 140 QNTWYG-KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
              +   +  LW  +GT    P + ++ PI        G +  G     R      AL +
Sbjct: 246 GQPFRNVEEFLWRKDGTGF--PAEYSSSPI------IIGGKIVGAAVTFRDITQRHALER 297

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNK------------------V 240
              +    + + ++   ++ +           P    ++                     
Sbjct: 298 VRREFLQEIDDERRRLETILESLPVGVLIAEAPTGRIVQGNGQVEAILGHPVLETLQVAD 357

Query: 241 SSLTEYYAHKDDVLKTEKYPLLTS---EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297
            S    Y      L  E++PL  +    E+   ++  +   +            ++N+ +
Sbjct: 358 YSKWHGYHEDGTPLGAEEWPLARAVLHGETVNGQELLYRRPDGQDIWLSVSAAPVRNSDR 417

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPE------------------TVDKCPIPFFVYSHG 339
           +    ++     +     +E      E                  + ++  +       G
Sbjct: 418 QLIGAVATFQDVTARRRSEEERARLLEREQAARAEAERIAQALWRSEERLRLALEAGRMG 477

Query: 340 NLFYANPSFLLLTKYKSVDDIEIA-------GGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
              Y  P+   ++   +++++          G    L              +        
Sbjct: 478 TWDYE-PATDRMSLSSTMEEMHGLPVGGFRGGFEDFLRLVYPADRLRLRDALDSAARHGG 536

Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME--IE 450
              +  RL  ++   +    +        +     +  +G+  +  D R  +  +    E
Sbjct: 537 SFHSEYRLAAVE---DGFRWIEIRGRVFYDPSGTPVRLSGVSVDVTDRRRAEDSLRFLAE 593

Query: 451 VMQ 453
             +
Sbjct: 594 AER 596


>gi|330901754|gb|EGH33173.1| response regulator, sensor histidine kinase component GacS
           [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 343

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 76/243 (31%), Positives = 140/243 (57%), Gaps = 8/243 (3%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  A+K A + S  KS+FLA +SHEIRTPL  I+GF+ +++     P    R  +Y   
Sbjct: 14  ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSELTP----RQFDYLGT 69

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I++S + +L I+N++LD SKIE+GK+ L   P +L + + + ++++   A+ K++ + + 
Sbjct: 70  IEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSL 129

Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQI---IISTTHTSNEEVILRVRDTG 745
              + P  +  D   ++QI  N++SNAI FT  G  +   ++      + ++ + V+DTG
Sbjct: 130 VYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAMLEDETEEHAQLRISVQDTG 189

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+++ ++    + F Q  NS   +  GTGLGL ++K +++   G+  + STP +G+   
Sbjct: 190 IGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFW 249

Query: 806 IIF 808
           I  
Sbjct: 250 ISL 252


>gi|291571152|dbj|BAI93424.1| two-component hybrid sensor and regulator [Arthrospira platensis
           NIES-39]
          Length = 917

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 73/257 (28%), Positives = 135/257 (52%), Gaps = 16/257 (6%)

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP--RY 623
           Q   +L  AK+ AE  +  KS FLA +SHE+RTPL AI+GF++++  Q      +    +
Sbjct: 425 QRTAELRQAKENAEVANQAKSQFLAHMSHELRTPLNAILGFTQLMIRQISLENNHNLNNF 484

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            ++   I RSG  +L ++ND+LD+SKIE+GK++L+     L   +     +  + A  + 
Sbjct: 485 RDHLYIIQRSGEHLLQLINDVLDMSKIEAGKISLNINNFDLWSLLDSLEEMFSIRAASEG 544

Query: 684 ILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE------ 736
           + +    + N+PR I +D + ++Q+ +N++ NA+ FT +G  + + +             
Sbjct: 545 LKLIFVRSPNLPRYINSDEQKLRQVLINLIGNAVKFTENGS-VTLHSQVIDPPNQIDNPQ 603

Query: 737 -----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
                +   V DTG G+   ++++  +PF Q    ++ + +GTGLGLP+++  V    G 
Sbjct: 604 PPPMVLQFTVEDTGPGIAPADIDQLFEPFLQTETGRKYQ-QGTGLGLPISQQFVQLMGGD 662

Query: 792 FYIFSTPAKGTLIEIIF 808
             + ST   G++ +   
Sbjct: 663 ISVSSTLGVGSVFKFKI 679


>gi|224827281|ref|ZP_03700374.1| PAS/PAC sensor signal transduction histidine kinase [Lutiella
           nitroferrum 2002]
 gi|224600494|gb|EEG06684.1| PAS/PAC sensor signal transduction histidine kinase [Lutiella
           nitroferrum 2002]
          Length = 864

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 115/649 (17%), Positives = 211/649 (32%), Gaps = 52/649 (8%)

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
              +     E + G   ++          +P     +     +L      + D     + 
Sbjct: 223 SQLRLVAWQEQQPGTPFLDSHPGHPLPTSAPLQARTLTLGGITLQYAVFAQRDPALALQD 282

Query: 260 PLL-------TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
             L             L         NL               S  S  +     H    
Sbjct: 283 HDLLVLMLSAAGALCLLIYLYRLGHSNLQFRHALLVKHDQLMESNRSL-HRQLDEHRRAE 341

Query: 313 AYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS----- 367
               + E      ++       +        A  +       +  + +      S     
Sbjct: 342 QALADSEARQRAILEASSDAILLLESDGTVRAANAAAARLIGRHDECLPHRPLASLFPDW 401

Query: 368 ------TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                             A     L   D + +     L  +    +    +      + 
Sbjct: 402 VDPERHRPFGQIAAEHAGAPFEAQLRCEDGSRLPVELTLSQVDQPDDTCFLLVCRNIRQR 461

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
            +    +               + ++E +  QL ++L+A+   +A +  +      NRA 
Sbjct: 462 KEQEAALLALKNTL--------EGQVEQQRQQLAALLDASPLAMAYV-ADHRFKQVNRAF 512

Query: 482 SKLFGYPVEDILRKPFTVFLE-QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
            +LF  P  D++ +P T   E       +   L  +LS    Q  ++       +   L 
Sbjct: 513 LELFRLPAGDVVEQPTTQIFESIEQWQRLVRLLYGVLSQG--QVCQQDLRLRDGDGGALW 570

Query: 541 LRI---IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
            ++    +              DIS  +  +  L  AK +AE  S  K++FLA +SHE+R
Sbjct: 571 CQLYGKALDPALPGLGSVWIFQDISAQRATEAALREAKTLAEDTSRAKTEFLANMSHELR 630

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TPL AI+GF+E +  +R      P+   Y   I RSG  +L ++NDLLD++K+E  +M  
Sbjct: 631 TPLHAILGFAE-MGERRSASDNTPKQQHYFERIHRSGKRLLTLLNDLLDLAKMEVKRMEF 689

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
              P  L   V EA   +   A +  + I     +     + D   + Q+  N+L+NAI 
Sbjct: 690 QMMPQDLLRCVYEARDEMLPMAAKNGVDIILKADSLTLPAVFDPLRIGQVMRNLLANAIK 749

Query: 718 FTPSGGQIIISTTHTSN----EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ----- 768
            +P GG I +     ++    + V + V D G G+ + E E     F Q   ++      
Sbjct: 750 VSPPGGVITVHVAPRADADGIDRVEVAVTDQGPGIADDEREPIFDKFVQGSATKTGAGGS 809

Query: 769 -IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
            +          + + +V A+ G+    +    G +   I P +    P
Sbjct: 810 GLGLS-------ICREIVLAHDGEISAGNADGGGAIFRFILPRWPRPAP 851



 Score = 39.6 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 20/243 (8%), Positives = 49/243 (20%), Gaps = 7/243 (2%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI-DPNNHIGDLLKRQNTWYGKTTL 149
           A    K+++    +     A  ++      + + +        +   +  Q     +   
Sbjct: 501 ADHRFKQVNRAFLELFRLPAGDVVEQPTTQIFESIEQWQRLVRLLYGVLSQGQVCQQDLR 560

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
              +G    +   L    +   +    G     I           A  +           
Sbjct: 561 LR-DGDGGALWCQLYGKAL---DPALPGLGSVWIFQDISAQRATEAALREAKTLAEDTSR 616

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
            K    +    +               + + +S                   L +  + L
Sbjct: 617 AKTEFLANMSHELRTPLHAILGFAEMGERRSASDNTPKQQHYFERIHRSGKRLLTLLNDL 676

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
            +        +      Q    L+   +   E L       +           P   D  
Sbjct: 677 LDLAKMEVKRMEFQMMPQDL--LRCVYEARDEMLPMAAKNGVDIILKADSLTLPAVFDPL 734

Query: 330 PIP 332
            I 
Sbjct: 735 RIG 737



 Score = 38.9 bits (89), Expect = 3.8,   Method: Composition-based stats.
 Identities = 40/362 (11%), Positives = 91/362 (25%), Gaps = 33/362 (9%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI----GDLLKRQNTWYGKT 147
            G ++  +    + IG    + +  R         +DP  H              +  + 
Sbjct: 368 DGTVRAANAAAARLIG-RHDECLPHRPLASLFPDWVDPERHRPFGQIAAEHAGAPF--EA 424

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
            L   +G+ L V + L+ +                +    R   +  A    L       
Sbjct: 425 QLRCEDGSRLPVELTLSQVDQPDDT------CFLLVCRNIRQRKEQEAALLALKNTLEGQ 478

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
            E ++   +   +   +                    ++   + +    E + L   +  
Sbjct: 479 VEQQRQQLAALLDASPLAMAYVA--------------DHRFKQVNRAFLELFRLPAGDVV 524

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
             P  + F +I   Q   +  +G L        +                G+ L P    
Sbjct: 525 EQPTTQIFESIEQWQRLVRLLYGVLSQGQVCQQDLRLRDGDGGALWCQLYGKALDPALPG 584

Query: 328 KCPIPFFVYSHGNLFYANPSFLL----LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
                 +++   +   A  + L     L +  S    E    +S  L  P  +     + 
Sbjct: 585 LGS--VWIFQDISAQRATEAALREAKTLAEDTSRAKTEFLANMSHELRTPLHAILGFAEM 642

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
                +             I  + +  L +     + A    + M    +  + +     
Sbjct: 643 GERRSASDNTPKQQHYFERIHRSGKRLLTLLNDLLDLAKMEVKRMEFQMMPQDLLRCVYE 702

Query: 444 KR 445
            R
Sbjct: 703 AR 704


>gi|259482698|tpe|CBF77424.1| TPA: Histidine kinase J7 [Source:UniProtKB/TrEMBL;Acc:Q6WJ24]
           [Aspergillus nidulans FGSC A4]
          Length = 1297

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 76/255 (29%), Positives = 129/255 (50%), Gaps = 12/255 (4%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           +S  +    + + A++ AE  +  KS+FLA +SHEIRTP+  IIG +++  +        
Sbjct: 700 VSNLRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDD---LK 756

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
           P   E  N +    N +L I++D+LDISKIE+ +M +   P ++   V  A+  + + AN
Sbjct: 757 PYTREMLNVVHNLANSLLTIIDDILDISKIEANRMVIESIPFTVRGTVFNALKTLAVKAN 816

Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV-- 737
           EK + +     N +P  ++ D   ++QI LN++ NAI FT  G ++ ++   +  E+   
Sbjct: 817 EKFLSLTYQVDNTVPDYVIGDPFRLRQIILNLVGNAIKFTEHG-EVKLTICKSDREQCAA 875

Query: 738 -----ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
                   V DTG+G+   +L+     F Q   S   R  GTGLGL ++K +V+   G  
Sbjct: 876 NEYAFEFSVSDTGIGIEEDKLDLIFDTFQQADGSTTRRFGGTGLGLSISKRLVNLMGGDV 935

Query: 793 YIFSTPAKGTLIEII 807
           ++ S    G+     
Sbjct: 936 WVTSEYGHGSTFHFT 950


>gi|114328772|ref|YP_745929.1| sensory transduction protein kinase [Granulibacter bethesdensis
           CGDNIH1]
 gi|114316946|gb|ABI63006.1| sensory transduction protein kinase [Granulibacter bethesdensis
           CGDNIH1]
          Length = 933

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 97/730 (13%), Positives = 204/730 (27%), Gaps = 92/730 (12%)

Query: 155 TNLYVPIDLAALPIYSRNREFSGFR---GFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
           T +  P+  AA PI + +    G     G     ++    D      RL    S   + +
Sbjct: 56  TEVIRPVFFAAHPIITPSGRKQGALCVLGMTARTLSPAQTDRLLALARLAGMQSDPPDDQ 115

Query: 212 K-------GHSSVEKEKYDIFSQQS---------------------PPPHLRMKNKVSSL 243
                   GH   + +  ++                                  + +   
Sbjct: 116 SNDQSDQNGHVPAQSDFLELLGTSPDCMKILTTDGRLLFISNAGLKALGIADPSHVIGKS 175

Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL 303
             +   +    +                +                   L +        +
Sbjct: 176 WPHLWDEPVRSQALAAVAKARSGGIGRLEGTTTNSQGESSHWDIIITPLLDQKGRITRLM 235

Query: 304 SHRNHPSLSAYFDEG----ENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVD 358
           +     + +    +     E       +  P   ++    G++ Y +  +   +      
Sbjct: 236 AVSRDITEAREAQQALQYSEARFRMMTESLPQIIWMTDQQGDILYVSEKWEHFSGRSPRH 295

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
            ++   G    L  P   D   ++           +    R+     +      +     
Sbjct: 296 LLQK--GRWMSLVHP--HDRQTLRTAWAAARQEGSLKCEYRMR--HRSGGYRWFLLTAQP 349

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM-----------QLCSILEATSDGIAI 467
           E      E +   G   +    R  +  +                +L  I   + D +AI
Sbjct: 350 EPDPATGEPLRWFGSCTDIDVERNIREALAARSQGLEQEIAHHVQELERIWCLSRDLLAI 409

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
           +  +G ILS N A   + G+     +  P  +    +  + +   + ++     +  + +
Sbjct: 410 LRYDGRILSINPAWQAILGWDNVKDIENPIDILCHPDDLAEVERSMEQMRQG--QTVVSQ 467

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES--SHK 585
                  +     +               T  D+++    +      +    +       
Sbjct: 468 PVRILHVDGSYRWISWNAVPF--DGLIYATGRDVTDLISAEEHRKELEAQLHQSQKMEAV 525

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
                 ++H+    LTA+ G  E +               Y     ++      + + LL
Sbjct: 526 GQLTGGIAHDFNNLLTALRGSLE-LIQTNLDRGRLQSLPRYIATAHQAVERGASLTHRLL 584

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVK 705
             S+    +  L    +     ++    L++       I ++TSF +    I  D   ++
Sbjct: 585 AFSR----RQTLSPCILDPASLMTGMAELIKSIC-GPSIQVQTSFQSMPALIQCDPNQLE 639

Query: 706 QIALNILSNAIHFTPSGGQIIISTTH-----------------------TSNEEVILRVR 742
              LN++ NA    P GG +II T                            + V++ V+
Sbjct: 640 NGLLNLVINARDAMPQGGTLIIETGIIQIPDRHVSEVNETWLDSALSNFQPGDYVVIAVQ 699

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG+GMT   + +A  PF          G+GTGLGL +    +    G   + S+   GT
Sbjct: 700 DTGIGMTEDVMRRAFDPFFTTKP----IGQGTGLGLSMIYGFIKQTGGHIRLKSSLGSGT 755

Query: 803 LIEIIFPLYD 812
            I + FP Y 
Sbjct: 756 TIRLYFPCYH 765



 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 46/466 (9%), Positives = 121/466 (25%), Gaps = 46/466 (9%)

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY---PLLTS 264
              +     +            P     +     +  E   H  D     +        +
Sbjct: 7   APGQSAFLDIHDAGQGKLPFLPPTSLSALAKAFMAGEEPVIHIRDQALPTEVIRPVFFAA 66

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE------- 317
                P       + +   T +       +           ++ P      D+       
Sbjct: 67  HPIITPSGRKQGALCVLGMTARTLSPAQTDRLLALARLAGMQSDPPDDQSNDQSDQNGHV 126

Query: 318 -GENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
             ++   E +   P     + + G L + + + L          +               
Sbjct: 127 PAQSDFLELLGTSPDCMKILTTDGRLLFISNAGLKALGIADPSHVIGKSW------PHLW 180

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
            +    + +      R+         T     E+S     I     +Q         +  
Sbjct: 181 DEPVRSQALAAVAKARSGGIGRLEGTTTNSQGESSHW-DIIITPLLDQKGRITRLMAVSR 239

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
           +  + R  ++ ++    +   + E+    I + +++G IL  +       G     +L+K
Sbjct: 240 DITEAREAQQALQYSEARFRMMTESLPQIIWMTDQQGDILYVSEKWEHFSGRSPRHLLQK 299

Query: 496 -PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-- 552
             +   +  +    +              +L+       +        +  +  P  +  
Sbjct: 300 GRWMSLVHPHDRQTLRTAWAAARQEG---SLKCEYRMRHRSGGYRWFLLTAQPEPDPATG 356

Query: 553 ---CYSLTMHDISEWKQ-----------EKNKLSHAKKIAEKESSHKSDFLARVSHEIR- 597
               +  +  DI   +             + +++H  +  E+      D LA + ++ R 
Sbjct: 357 EPLRWFGSCTDIDVERNIREALAARSQGLEQEIAHHVQELERIWCLSRDLLAILRYDGRI 416

Query: 598 ---TPL-TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639
               P   AI+G+  V       P+    + +    ++RS   +  
Sbjct: 417 LSINPAWQAILGWDNV--KDIENPIDILCHPDDLAEVERSMEQMRQ 460



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 45/398 (11%), Positives = 101/398 (25%), Gaps = 36/398 (9%)

Query: 92  HGYLKEISEELPKTIGN-YAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150
            G L  IS    K +G      +IG     + D              +       + T  
Sbjct: 149 DGRLLFISNAGLKALGIADPSHVIGKSWPHLWDEPVRSQALAAVAKARSGGIGRLEGTTT 208

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
             +G + +  I +   P+  +    +  R   +        + +   +  + +F  + E 
Sbjct: 209 NSQGESSHWDIII--TPLLDQKGRIT--RLMAVSRDITEAREAQQALQYSEARFRMMTES 264

Query: 211 KKGHSSVEKEKYDIFSQQSPPPH--LRMKNKVS--SLTEYYAHKDDVLKTEKYPLLTSEE 266
                 +  ++ DI        H   R    +          H  D            +E
Sbjct: 265 LPQIIWMTDQQGDILYVSEKWEHFSGRSPRHLLQKGRWMSLVHPHDRQTLRTAWAAARQE 324

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNS-KESFEYLSHRNHPSL-----SAYFDEGEN 320
            SL  +      +              + +  E   +        +      A     + 
Sbjct: 325 GSLKCEYRMRHRSGGYRWFLLTAQPEPDPATGEPLRWFGSCTDIDVERNIREALAARSQG 384

Query: 321 LTPETVDKCP------------IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
           L  E                  +    Y  G +   NP++  +  + +V DIE    +  
Sbjct: 385 LEQEIAHHVQELERIWCLSRDLLAILRYD-GRILSINPAWQAILGWDNVKDIENP--IDI 441

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
           L     L++       M                 I     +   +++      +      
Sbjct: 442 LCHPDDLAEVERSMEQMRQGQTVVSQPV-----RILHVDGSYRWISWNAVP-FDGLIYAT 495

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
            ++  +    +    + + ++   Q    +   + GIA
Sbjct: 496 GRDVTDLISAEEHRKELEAQLHQSQKMEAVGQLTGGIA 533



 Score = 67.7 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 38/344 (11%), Positives = 83/344 (24%), Gaps = 30/344 (8%)

Query: 70  SENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMI--GMRLCDVSDILHI 127
           SE  F         +  W  D  G +  +SE+     G     ++  G     +      
Sbjct: 254 SEARFRMMTESLP-QIIWMTDQQGDILYVSEKWEHFSGRSPRHLLQKGR-WMSLVHPHDR 311

Query: 128 DPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187
                     +++ +   +  +    G   Y    L A P           R FG     
Sbjct: 312 QTLRTAWAAARQEGSLKCEYRMRHRSGG--YRWFLLTAQPEPDPA-TGEPLRWFGSCTDI 368

Query: 188 R-VDNDPRALGKRLDKKFSHLHE----------IKKGHSSVEKEKYDIFSQQSPPPHLRM 236
               N   AL  R       +            + +   ++ +    I S       +  
Sbjct: 369 DVERNIREALAARSQGLEQEIAHHVQELERIWCLSRDLLAILRYDGRILSINPAWQAILG 428

Query: 237 KNKVSSLTEYYA---HKDDVLKTEK-YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL 292
            + V  +        H DD+ + E+    +   ++ + +      ++ +           
Sbjct: 429 WDNVKDIENPIDILCHPDDLAEVERSMEQMRQGQTVVSQPVRILHVDGSYRWISWNAVPF 488

Query: 293 QN---NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFL 349
                 +      L               ++   E V +       +   NL  A    L
Sbjct: 489 DGLIYATGRDVTDLISAEEHRKELEAQLHQSQKMEAVGQLTGGIA-HDFNNLLTALRGSL 547

Query: 350 LL----TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389
            L         +  +      +        S  + +      ++
Sbjct: 548 ELIQTNLDRGRLQSLPRYIATAHQAVERGASLTHRLLAFSRRQT 591


>gi|95931098|ref|ZP_01313824.1| histidine kinase [Desulfuromonas acetoxidans DSM 684]
 gi|95132843|gb|EAT14516.1| histidine kinase [Desulfuromonas acetoxidans DSM 684]
          Length = 1279

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 79/337 (23%), Positives = 151/337 (44%), Gaps = 19/337 (5%)

Query: 480  AVSKLFGYPVEDILRKPFTV-FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
            + +  FG   +    +      L+    +         ++ +    ++   L  +    L
Sbjct: 699  SYALYFGIQKDLPELRSIINKALQSIDANERREIYRRWIAFEYEADIDYRLLWQSAAIFL 758

Query: 539  LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
            + +   +              ++   +Q +  L  AK+ AE+ +  KS FLA +SH+IRT
Sbjct: 759  VIIAATLWWNR------RLKAEVERRRQAEAALLVAKEAAEQATKAKSVFLAHMSHDIRT 812

Query: 599  PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
            PL ++IGF++++       + +P    Y   I   G  +L I+ND+LD+SKIE+G+M LH
Sbjct: 813  PLNSVIGFTDIL----DTLIKDPVQKGYLRSIKIGGKALLGIINDILDLSKIEAGQMVLH 868

Query: 659  FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIH 717
             E V+  +   +   L       K +         +P+ +L D   ++QI LN++ NAI 
Sbjct: 869  RENVNPHQLFRDMEQLFHEQIRHKNLNFVVDVDEALPQSLLVDAVRLRQILLNLIGNAIK 928

Query: 718  FTPSGGQIIISTTH--TSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
            FT  G  + +         +    ++ + V D+G+G++  + E   + F Q     + R 
Sbjct: 929  FTEQG-YVTLRVQKIFRDAQCSKLDLQIDVEDSGMGISPDDHESIFQMFQQSKGQDERRF 987

Query: 772  EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
             G+GLGL + + +V    G+ ++ S   +G+   +I 
Sbjct: 988  GGSGLGLAICQKLVTMMDGEIHVASELGQGSTFSVIL 1024


>gi|227510658|ref|ZP_03940707.1| signal transduction histidine kinase [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
 gi|227190310|gb|EEI70377.1| signal transduction histidine kinase [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
          Length = 462

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 79/404 (19%), Positives = 166/404 (41%), Gaps = 30/404 (7%)

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII 474
             P       P     + +       +   + ++    +L +IL +   GI +I+    +
Sbjct: 80  VAPLFIRPGNPYKQIADQLTELQSRQQDESKTIKNSNTELVTILSSLPVGIMVIDSSQDV 139

Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL--DLRQTLEKITLGS 532
           +  N  ++ +         ++         +  + N+ L  ++    +  ++ +      
Sbjct: 140 IFANHKMASML--------QRNIMNQPHSYSQDIRNYQLLSLIERVFEDHESQQTEIRSV 191

Query: 533 TKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
                     ++  +L      S+ M+DIS+    K                + DFL   
Sbjct: 192 GDHSSTWDTSVVYNQLENDYHISVIMYDISDIINVK--------------QMQIDFLRNA 237

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHE++TP+TAI GF++ +             +E+   ID+    +  ++ D+L IS I++
Sbjct: 238 SHELKTPVTAISGFAKTLLGGAMD--DRKTLVEFLKIIDQQSTQLTSLIQDVLTISHIQN 295

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712
           G  + H + + L + V   ++     A  + I +      +   +  D + + +I  N++
Sbjct: 296 GTPH-HSQALELKKFVDAKLTGYSSMAKVRDITLVDEVPQDA-VVSVDSQMLTRILQNLV 353

Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI-RG 771
           SNAI +  SGG + +  +   +    L V DTG+G+   ++ +  + F +  +S+   + 
Sbjct: 354 SNAIKYNRSGGSVTVKYSANDS-FWQLHVVDTGIGIAQKDISRLFERFYRADDSRTKQKV 412

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            GTGLGL + K +VD+  G  ++ S    G+   + FP+ D S 
Sbjct: 413 SGTGLGLAIVKELVDSIGGVIHVKSQRGVGSTFTVEFPINDESQ 456


>gi|225678001|gb|EEH16285.1| signal transduction histidine-protein kinase barA [Paracoccidioides
            brasiliensis Pb03]
          Length = 1406

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 78/255 (30%), Positives = 130/255 (50%), Gaps = 12/255 (4%)

Query: 561  ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
            +S  +    + + A++ AE  +  KS+FLA +SHEIRTP+  IIG +++  +        
Sbjct: 802  VSNLRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDD---LK 858

Query: 621  PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
            P   E  N +    N +L I++D+LDISKIE+ +M +   P S+  AV  A+  + + AN
Sbjct: 859  PYPREMLNVVHSLANSLLTIIDDILDISKIEANRMVIERIPFSMRGAVFNALKTLAVKAN 918

Query: 681  EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI- 738
            EK + +     ++IP  +  D   ++QI LN++ NAI FT  G ++ ++   +  EE   
Sbjct: 919  EKILNLIYQVDSSIPDFVTGDPFRLRQIILNLVGNAIKFTERG-EVRVTILKSDREECRP 977

Query: 739  ------LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
                    V DTG+G+   +L+     F Q   S   +  GTGLGL ++K +V+   G  
Sbjct: 978  NEYSFEFIVSDTGIGIEEDKLDLIFDTFQQADGSTTRKFGGTGLGLSISKRLVNLMGGDV 1037

Query: 793  YIFSTPAKGTLIEII 807
            ++ S    G+     
Sbjct: 1038 WVTSEFGHGSKFHFT 1052


>gi|218439644|ref|YP_002377973.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
 gi|218172372|gb|ACK71105.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
          Length = 873

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 81/413 (19%), Positives = 161/413 (38%), Gaps = 38/413 (9%)

Query: 421 ANQFPENMPQNGIEPEDVDTRI-NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
             +  E   +     + +   I  ++++E ++ +   ++  T+D I + N    I+  N+
Sbjct: 341 EKRVEERTAELSRTNQRLQQEINERQRIEEKIREQAELINITTDAICVYNLCDQIIFCNQ 400

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
              +L+ +  E++L K      +  T + +   L  +L     +        ST++ K +
Sbjct: 401 GAERLYDWSREEVLGKKTPELFKDETSAQLLEALKTVLERGEWRG---ELTKSTQKGKTV 457

Query: 540 SLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
            +      +           +   D++E KQ + ++  A+++            + ++H+
Sbjct: 458 IVASRWTLIRDERGEPKSILVIDTDMTEKKQLEAQILRAQRL-----ESLGRLASGIAHD 512

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
               LT I+G S+++         +    +    I+ +     +++  LL  ++     +
Sbjct: 513 FNNILTPILGASQLL--PVLSSQKDESIQKLLTSIETNAKRGTELIKQLLSFAR----GI 566

Query: 656 NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715
            +   P+SL +  SE  + ++     K I I   +  N+  ILAD   + Q+ LNI  NA
Sbjct: 567 EVQKNPISLVQLFSELETTLKSVFP-KSIEIIIDYPTNLWTILADSTQLYQVILNICINA 625

Query: 716 IHFTPSGGQIIIS--------------TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG 761
               P+GG I I                       +++   DTGVGMT    E+   PF 
Sbjct: 626 RDAMPNGGIITIRGKNFYIDESYQKMYLEAGVGPYIVVTFSDTGVGMTPEVQEQIFDPFF 685

Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
                    G G+GLGL     +V  + G   + S   KGT  ++  P  D  
Sbjct: 686 TTKA----VGRGSGLGLATVMGIVKNHGGFITVSSQVNKGTQFQVFLPAIDVE 734


>gi|77411973|ref|ZP_00788303.1| sensor histidine kinase [Streptococcus agalactiae CJB111]
 gi|77161999|gb|EAO72980.1| sensor histidine kinase [Streptococcus agalactiae CJB111]
          Length = 551

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 72/386 (18%), Positives = 167/386 (43%), Gaps = 34/386 (8%)

Query: 426 ENMPQNGIEPEDVDTRINKRKM--EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
           E +       +   ++I  +K+  +    ++ +I+    +G+ +++ +  I+S N    K
Sbjct: 194 EEITPLLRRLDSHQSKIQHQKLLLQKRQKEIDTIISKIKEGMILLDDQARIVSINAEALK 253

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           LF    +          +E +    +   + + L    ++           E     + +
Sbjct: 254 LFQINDDW----HGRFMMEVSRDLTLKDLIDQGLKGKKKEA------NIDIENNHYRVLV 303

Query: 544 IIKKLPFS-SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
                    +   + + D+++  Q +                + +F A VSHE++TPL  
Sbjct: 304 RPTTDNNRVTGLVVLLFDVTDQLQME--------------QLQREFTANVSHELKTPLHV 349

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           I G+SE++ NQ    + N    ++A  I +    ++ +V D++++S ++  +  L  E V
Sbjct: 350 ISGYSELLANQM---VPNEEVPQFAAKIHKESERLVKLVEDIINLSHLDEQE-KLPQETV 405

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
           +L +   + +  +Q  A++K I I  +    I  +  +   +  +  N+  NA+ +    
Sbjct: 406 NLYDLTQKVLEGLQAKADKKHIQINFNGEEAI--LRGNPVLLNSLVYNLCDNALTYNHEK 463

Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
           GQ+ ++  ++ +  + L V DTG+G+   + ++  + F ++  S+     GTGLGL + K
Sbjct: 464 GQVNVTLKNSPD-TITLEVSDTGLGIAEKDKKRIFERFYRVDKSRSKIVGGTGLGLSIVK 522

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIF 808
           +  D + G   + S   +GT + ++ 
Sbjct: 523 SAXDFHNGSIKVDSHLGQGTTMTVLL 548


>gi|227327490|ref|ZP_03831514.1| phosphate regulon sensor protein [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 440

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 64/371 (17%), Positives = 131/371 (35%), Gaps = 36/371 (9%)

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
           +  S  E+  D + I   EG I   N     L  +   +   +     L     +     
Sbjct: 99  RFRSGAESLPDAVVITTEEGTIFWCNHLAQHLLSFRWPEDNGQNILNLLRYPEFTNYM-- 156

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572
                     Q   +           +  R++           + + DI++  Q +    
Sbjct: 157 --------KGQDFSRPLTLQLNNSHHVEFRVMPY---SEGQLLMVVRDITQMHQLEG--- 202

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
                       + +F A VSHE+RTPLT + G+ E+++ +        +     N +  
Sbjct: 203 -----------ARRNFFANVSHELRTPLTVLQGYLEMMQEETLDAALRGKA---LNTMQE 248

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
               +  +V  LL +S+IE+       E V +   +       Q  +  +   I      
Sbjct: 249 QTRRMDGLVKQLLTLSRIEAATAIDLNEKVDIPLMLRVLQREAQTLSQGRH-EIVFRVNE 307

Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752
           ++ R+  +   ++    N++ NA++ TP+G +I +            +V D G G+    
Sbjct: 308 SL-RVFGNEEQLRSAVSNLVYNAVNHTPAGTRIEVCWQKIPQG-AQFQVSDNGPGIAAEH 365

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP--- 809
           L +  + F ++  ++  +  G+GLGL + K  +  +  +  I S    G+      P   
Sbjct: 366 LPRLTERFYRVDKARSRQTGGSGLGLAIVKHALSHHDSRLEIMSEDGLGSRFVFTLPNRL 425

Query: 810 LYDTSHPHDCI 820
           +   S   + +
Sbjct: 426 IVPASLAENTV 436


>gi|301310672|ref|ZP_07216611.1| two-component system histidine kinase [Bacteroides sp. 20_3]
 gi|300832246|gb|EFK62877.1| two-component system histidine kinase [Bacteroides sp. 20_3]
          Length = 736

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 92/386 (23%), Positives = 170/386 (44%), Gaps = 21/386 (5%)

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDI 492
             E +  +  + K++ E   L   L++ +  I      +G+    NR      G P   +
Sbjct: 351 IQEALHKKDAQEKLKREKTFLSFALDSGN--IFAFRYSKGVFEFDNR-FYHYLGMPCVPM 407

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII------- 545
             + F   +              + S  L + + +      K+                 
Sbjct: 408 KIEEFQDAIHPEELDNFLRDRNLLDSGFLSRKVTQRRCNFNKKGYEWWEFRYAQNKNEKD 467

Query: 546 -KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
                 +   S    +I   K  +N L  A++ AE+    K  FLA +SHEIRTPL AI+
Sbjct: 468 SVSDDEAVEVSGLCLNIQRIKDTENSLIAARRKAEESDRMKLVFLANMSHEIRTPLNAIV 527

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           GFS+++ +    PL      E+ + I ++ +L+L ++ND+LD+S+IESG M+  +E + L
Sbjct: 528 GFSQLLNSDM--PLEPEEKAEFIDLITKNSDLLLKLINDILDLSRIESGSMSFSYENLDL 585

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ 724
            + + +     QL   E  + ++    +    I +D   + Q+  N ++NA+ FT  G  
Sbjct: 586 SKLMGDIFHTHQLMMPE-GVELKIRVPHEPLIIRSDHFRLTQVCTNFINNAVKFTAKG-Y 643

Query: 725 IIISTTHTSNEE-VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
           I I    +++ + +++ V+DTG G+ + + EK  + F ++        +GTGLGL + ++
Sbjct: 644 IEIGYELSADGKSILISVKDTGKGIPDDKKEKVFERFQKLD----EFAQGTGLGLAICQS 699

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFP 809
           +V    G   + S    G+   I  P
Sbjct: 700 IVHTFHGSISLESEVGVGSKFTISLP 725


>gi|123441097|ref|YP_001005086.1| hybrid sensory histidine kinase BarA [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122088058|emb|CAL10846.1| two-component regulatory protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 944

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 86/335 (25%), Positives = 146/335 (43%), Gaps = 17/335 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           LF Y +   +  P    +       ++      L   +   +             +++ +
Sbjct: 192 LFAYRLMRDVTGPIRNMVN-----AVDRIRRGQLDSRVEGHMLGELNILKNGINSMAMSL 246

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 247 AAYHEEMQQNIDQATSDLRETLEQMEIQNVELGLAKKRAQEAARIKSEFLANMSHELRTP 306

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+     Q       P   +Y   I RS N +L I+ND+LD SK+E+ K+ L  
Sbjct: 307 LNGVIGFT----RQTLKTSLTPTQTDYLQTIQRSANNLLCIINDVLDFSKLEAEKLILEH 362

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P SL  A+ E I L+   A+EK + +      ++P  ++ D   ++QI  N+L NAI F
Sbjct: 363 IPFSLRGALDEVIILLAHTAHEKGLELTLHVNKDVPEQVIGDAMRLQQIVTNLLGNAIKF 422

Query: 719 TPSGGQ---IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T  G     + +    +    +++ + DTG+G++  +  +  + F Q   S   R  GTG
Sbjct: 423 TEQGNIDILVAVRAIASQQVTLVVEIHDTGIGISESQQAQLFQAFRQADASISRRHGGTG 482

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           LGL + + +V    G     S   +G+       L
Sbjct: 483 LGLVITERLVKEMGGDISFHSQVDRGSTFRFHLTL 517


>gi|308067232|ref|YP_003868837.1| regulator of cell autolysis [Paenibacillus polymyxa E681]
 gi|305856511|gb|ADM68299.1| Putative regulator of cell autolysis [Paenibacillus polymyxa E681]
          Length = 1039

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 68/244 (27%), Positives = 124/244 (50%), Gaps = 3/244 (1%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           ++ +  +        K +FLA  SHE+RTPL  II  ++ + + R+G   N         
Sbjct: 422 EVENLSRRLLTLDGLKDEFLANTSHELRTPLHGIINIAQSMLD-RYGTQFNEPQKHNLVL 480

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I   G  +  ++ND+LD S +++G++ L+  P ++  AV+  + ++     +K++     
Sbjct: 481 IANVGRRLSYLINDILDFSNLKNGRLALNRRPANVQAAVNSVLEVLGHTVGKKKLHFVKE 540

Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749
           + +++P++ AD   + QI  N+L NA+ FT  G +I+IS    + E   + V+DTG G+ 
Sbjct: 541 WPHSLPKVDADEDRLIQILYNLLGNAVKFTEEG-EIVISAKAGTREM-EISVKDTGSGIA 598

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
              L    +PF +  N++     GTGLGL + + +V+ + G   + S   KG+      P
Sbjct: 599 QEHLPHIFEPFNRGANAEDEGYSGTGLGLGIVRRLVELHGGHIRVESRLGKGSTFYFTMP 658

Query: 810 LYDT 813
           L  T
Sbjct: 659 LAQT 662



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 89/698 (12%), Positives = 191/698 (27%), Gaps = 115/698 (16%)

Query: 175  FSGFRGFGIVHVNRVDN-------DPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQ 227
            F    G+G V                  L KR    F  +  + +   +++  K +  + 
Sbjct: 384  FVYILGWGDVRGVTAYEMLIFVLAQTLLLAKRFVHSFMEVENLSRRLLTLDGLKDEFLAN 443

Query: 228  QSPP---PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP----EQEDFHTINL 280
             S     P   + N   S+ + Y  + +  +     L+ +    L     +  DF  +  
Sbjct: 444  TSHELRTPLHGIINIAQSMLDRYGTQFNEPQKHNLVLIANVGRRLSYLINDILDFSNLKN 503

Query: 281  NQYTKKQYFGTLQNNSKESFEYLSHR----------NHPSLSAYFDEGENLTPETV-DKC 329
             +    +    +Q       E L H             P      D  E+   + + +  
Sbjct: 504  GRLALNRRPANVQAAVNSVLEVLGHTVGKKKLHFVKEWPHSLPKVDADEDRLIQILYNLL 563

Query: 330  PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG--GLSTLLDAPKLSDNNAIKPVMLY 387
                     G +  +  +     +    D         L  +   P     NA       
Sbjct: 564  GNAVKFTEEGEIVISAKAGTREMEISVKDTGSGIAQEHLPHIF-EPFNRGANAEDEGYSG 622

Query: 388  RSDRTCIAAS------ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
                  I           +       + S     +P  +         ++      +   
Sbjct: 623  TGLGLGIVRRLVELHGGHIRVESRLGKGSTFYFTMPLAQTGTLVHEAQKDVSSAVILQPG 682

Query: 442  INKRK--MEIEVMQLCSILEATSDGIAIINREGIILSTN-RAVSKLFGYPV--------- 489
            +   +  +  E   L  + +     +  ++ +      N R + +L              
Sbjct: 683  VTSGQNVILHEEDALEQV-QTVPYKVLAVDDD----EVNLRVLEELLYTTGCSVVAVDHA 737

Query: 490  ----EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
                  +  +     +  +        +     +  R +L           + L   I  
Sbjct: 738  EEALHMLNGRTRFDLVITDWMMPEMSGIELCRRIRERYSLS-ELPVLLLTARDLPGDIRA 796

Query: 546  KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL-ARV-SHEIRTPLTAI 603
              +  ++ +     D  E K     L + +  AE+    +  FL A++  H +   L  I
Sbjct: 797  GFMAGANDFLRKPVDAEELKARVRTLLNMRHSAEEAVRSEMAFLQAQIKPHFLYNALNVI 856

Query: 604  IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP-- 661
            +             +   +  E                  L+++S+   G  +       
Sbjct: 857  VSTV---------AVDPDKAAEL-----------------LMELSQYLRGSFDFQNRENT 890

Query: 662  VSLD---EAVSEAISLVQLYANEK-RILIRT--SFANNIPRILADLRSVKQIALNILSNA 715
            V L    E V   ++L +    E+ ++ I    +  + IP +             I+ NA
Sbjct: 891  VPLSKELELVESYVALEKARFEERLQVTIEVGRNIRSLIPPLSIQP---------IVENA 941

Query: 716  IHFT----PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
            I        +GG + +        + ++ V D GVG+    LE+ +        S+    
Sbjct: 942  IRHGVMQRATGGTVRV-VVQEDGTDFVVSVTDDGVGIPAERLEQLL--------SEDHVS 992

Query: 772  EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
               GL   + + ++        I S   +GT +    P
Sbjct: 993  SSVGL-RNIHRRLIHMYGEGLRIESNSMQGTTVSFRVP 1029


>gi|293371900|ref|ZP_06618304.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f]
 gi|292633146|gb|EFF51723.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f]
          Length = 400

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 83/378 (21%), Positives = 156/378 (41%), Gaps = 31/378 (8%)

Query: 451 VMQLC-----SILEATSDGIAIINREGIILST--NRAVSKLFGYPVEDILRKPFTVFLEQ 503
             +        IL+A  D + + + +  I+    + A + + G    +I        L +
Sbjct: 39  KERFRDKYSTRILDALPDMLTVFDHDANIIELASSPATNHVEGISPNNITTTNVKDILPK 98

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
                +   + +++      T     +    +  L      I  L           DIS+
Sbjct: 99  EAYESVRKNMDKVILTGESSTARHELML---DGVLHHYENRIFPL-DKKYLLCMCRDISQ 154

Query: 564 WKQEKN-------KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
             + +        +L  A+  AE+    KS FLA +SHEIRTPL AI+GFS++I      
Sbjct: 155 QWEAEQTNAQQQKELKAARIKAEESDRLKSAFLANMSHEIRTPLNAIVGFSKLI----TY 210

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
                   +Y+  I+R+  ++L++ ND+LD++ +E+  +  +  P+ L +   +      
Sbjct: 211 ATSAEEKNQYSEIIERNSEMLLNLFNDILDLASLEADSLKFNIRPIKLIDICLQLEQQFW 270

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS-NE 735
               +  + +     +       D   + QI  N+LSNA  FTP G    I   +    +
Sbjct: 271 HK-TQNGVKLILDDVDTDMYTSGDWNRIIQIISNLLSNATKFTPKG---EIHFGYREKED 326

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            V   V+D+G+G+    +    + FG++ +      +GTGLGL L + +V+   G+ ++ 
Sbjct: 327 FVEFYVKDSGIGIPAARIATIFRRFGKVDDF----VQGTGLGLTLCRMLVEKMGGRIWLR 382

Query: 796 STPAKGTLIEIIFPLYDT 813
           S   +G+      PL   
Sbjct: 383 SQEGQGSRFYFTLPLVRQ 400


>gi|320536673|ref|ZP_08036688.1| PAS domain S-box [Treponema phagedenis F0421]
 gi|320146495|gb|EFW38096.1| PAS domain S-box [Treponema phagedenis F0421]
          Length = 413

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 70/373 (18%), Positives = 166/373 (44%), Gaps = 22/373 (5%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           ++  E   L +++++ S+G+ +++     + TNRA +++ G    +   KPF  ++    
Sbjct: 30  RIAEEYSLLEAMMDSLSNGVIVLDSFHTAVKTNRAAARILGRTFHESSDKPFWEYI---D 86

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII-KKLPFSSCYSLTMHDISEW 564
              +  +++ ++  +  +T E+  L      + + + ++   +        + + DI++ 
Sbjct: 87  DEKIAAFISSVIQNEEGETTEEFILSRDSGSRYIEISVLPLVEEHRVRGTIILLEDITQK 146

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN--QRFGPLGNPR 622
           K+ +           +  +  ++  A V+HEI+ PL AI    ++++   +      N +
Sbjct: 147 KRTE-----INHRRLESLASLTNLAAAVAHEIKNPLAAISIHVQLLRKNFKACDLHINEK 201

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             ++ N ++   + +  IV + L   +     + +   PV++++ +++          + 
Sbjct: 202 AQKHLNVVEEEIDRLNKIVVNFLFAVRP----LQVELAPVNINKIINDLHQTFLDEFKKS 257

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
            +         IP I  D R ++Q  +N L+NA     +GG +II TT   +  + + + 
Sbjct: 258 GVYFSLRLDKTIPIIQGDERLLRQAFMNFLTNAKAAMKTGGALIIYTTCKDD-FIEIYIS 316

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG G++   L K  +P+    +       GTGLGL +A  ++  + G  ++ S   +GT
Sbjct: 317 DTGQGISEENLHKIFEPYFSTKSD------GTGLGLTMAYKVIKEHNGDIHVDSVVGEGT 370

Query: 803 LIEIIFPLYDTSH 815
              I  P++   +
Sbjct: 371 CFTIYLPIHRHEN 383


>gi|257457920|ref|ZP_05623079.1| sensory box histidine kinase [Treponema vincentii ATCC 35580]
 gi|257444633|gb|EEV19717.1| sensory box histidine kinase [Treponema vincentii ATCC 35580]
          Length = 404

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 76/370 (20%), Positives = 169/370 (45%), Gaps = 25/370 (6%)

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
               +++++ + G+ I++    I+ TNRA S++ G P+ +   +P    +   + + +  
Sbjct: 28  ALFDAMMDSLTSGVIILDSNHAIIKTNRAASRILGIPLSESPDRPLWASI---SDTKLAD 84

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII-KKLPFSSCYSLTMHDISEWKQEKNK 570
           ++  ++  +   T E+  + + +  + + + ++   K        +T+ DI++ K+E+  
Sbjct: 85  FIHTVIKSEEAITAEEFIIVADEGNQYIEISVLPLVKEKRVRGTIITVEDITQRKREE-- 142

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN--QRFGPLGNPRYIEYAN 628
             + +++    S   ++  A V+HEI+ PL AI    ++++   +      N +  ++ +
Sbjct: 143 -INNRRLENLAS--LTNLAAAVAHEIKNPLAAISIHVQLLRKNFKACNLEINAKAQKHLD 199

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            ++     +  IV D L   +     +   F PV ++E +    +  Q   +   I   +
Sbjct: 200 VVEEEIERLNKIVVDFLFAVRP----LQCEFAPVDVNELIKNLFATFQEEFSAAGITFVS 255

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHF--TPSGGQIIISTTHTSNEEVILRVRDTGV 746
              + +P I AD R ++Q  +NIL+NA      P+GG++ ++T     E+V + V DTG 
Sbjct: 256 QLDSELPVIQADERFLRQALINILTNA-KAAMMPAGGELGVTTRF-DEEKVYITVTDTGK 313

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+    L K  +P+            G+GLGL +   ++  + G   + S    GT   +
Sbjct: 314 GIPPDILHKIFEPYFTTKPD------GSGLGLTMTYKVIKEHGGDIQVHSEVGSGTRFTL 367

Query: 807 IFPLYDTSHP 816
           + P+  +  P
Sbjct: 368 MLPITRSEKP 377


>gi|239993253|ref|ZP_04713777.1| putative signal transduction histidine kinase two-component system
           with Protein-glutamate methylesterase domain
           [Alteromonas macleodii ATCC 27126]
          Length = 938

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 78/249 (31%), Positives = 119/249 (47%), Gaps = 10/249 (4%)

Query: 565 KQEKNKLSHAKKIAEKE---SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           K+ + K  H     ++    +  K+ FLA +SHEIRTP+  IIG  E++         + 
Sbjct: 553 KRIEEKTEHLALALKEAEAANVAKTQFLANMSHEIRTPMNGIIGSCELMLENELPENVSA 612

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
           R    A  I RS + +L I++ +LD SKIESGKM    +  ++ E +  +  L +  A  
Sbjct: 613 R----AKTISRSASNLLIILDSILDWSKIESGKMLTDIQSCAIRELLEASCDLYRHAAQV 668

Query: 682 KRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
           K   I       +P  +  D   V QI  N+LSNAI FT  G  + ++ ++     + + 
Sbjct: 669 KGYDIALYINQGVPNALNIDAGKVSQIINNLLSNAIKFTSDG-VVTVNVSYAHQG-LKIS 726

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V DTG+G+   +L      F Q   S      GTGLGL ++K +V+   G+ Y+ S   K
Sbjct: 727 VSDTGIGIAPNKLRLIFDKFEQADPSTTRNFGGTGLGLAISKGLVELLGGELYVESELGK 786

Query: 801 GTLIEIIFP 809
           GT      P
Sbjct: 787 GTSFTFHIP 795


>gi|71909298|ref|YP_286885.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase, HAMP region:histidine
           kinase A, N-terminal [Dechloromonas aromatica RCB]
 gi|71848919|gb|AAZ48415.1| signal transduction histidine kinase [Dechloromonas aromatica RCB]
          Length = 620

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 104/441 (23%), Positives = 179/441 (40%), Gaps = 35/441 (7%)

Query: 392 TCIAASARLHTIQ-WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450
              A SARL      +   +  +  I    ++             +     + +R     
Sbjct: 40  RRAAVSARLLAASARDAMVAYDLATIDGIASDVLETGEISYVRFLDGQGRVMVERGALPS 99

Query: 451 VMQLCSILEATSDGI------AIINRE--GIILS----------TNRAVSKLFGYPVEDI 492
             +  + +  T DG+        ++ E  G I             NR           ++
Sbjct: 100 QPEFAAGVSQTEDGVLDRAVPITVSGESFGQIQFGIDIAPFTLALNRTQRWFMALSALEM 159

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
               F   +     +     L            ++       +E   + +     +   +
Sbjct: 160 GLVAFFSLILGTYLTRQLTALRNASREIAEGRFDRPLKIDGNDELAETAQAFNHMVEKVA 219

Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
                   IS  ++ K KL  AK+ AE  ++ KS FLA +SHE+RTP+T IIG S ++  
Sbjct: 220 GS------ISSLRESKAKLRQAKEEAESANAAKSQFLANMSHELRTPMTGIIGMSFLMMR 273

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
                  + +  ++A+ I RS N +L I+ND+LD+S IE+ K+ L     S  + + E +
Sbjct: 274 TEL----DEQQRDFADTIQRSANALLIIINDILDLSAIEAEKLRLAHANYSARKVIGEVL 329

Query: 673 SLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
           +L+   A+ K I + +  A+++P IL  D   ++Q+ LN+L NAI FT  G  + +   H
Sbjct: 330 ALISPSADAKNISLISQIADDLPEILVGDAIRLRQVLLNLLGNAIKFTEQGS-VTLEVAH 388

Query: 732 TS----NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
                  + +   VRDTG+GMT   +     PF Q   S   R  GTGLGL +++ +++ 
Sbjct: 389 QPTDDGRQRLNFVVRDTGIGMTPGVVNALFTPFFQADLSNTRRFGGTGLGLSISRRLIEL 448

Query: 788 NMGKFYIFSTPAKGTLIEIIF 808
             G+    S P  G+      
Sbjct: 449 MHGEISAESEPDVGSTFRFHI 469


>gi|261211895|ref|ZP_05926182.1| sensor histidine kinase [Vibrio sp. RC341]
 gi|260839245|gb|EEX65877.1| sensor histidine kinase [Vibrio sp. RC341]
          Length = 733

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 66/242 (27%), Positives = 114/242 (47%), Gaps = 13/242 (5%)

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           L   K  A+  +  KS FLA +SHEIRTP+  ++G ++++           +  ++   +
Sbjct: 340 LEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILLKDELTT----KQRQHLTSL 395

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
             SG  ++ ++N++LD SKIE GK  L + P  L   +    S+      EK +  +   
Sbjct: 396 YESGEHMMSLLNEILDYSKIEQGKFELDYSPFPLRSIIGSIKSIYSSLCYEKGLKFQLHS 455

Query: 691 A-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-----TSNEEVILRVRDT 744
             ++      D   ++QI  N+LSNA+ FT  G    +S             + ++V+D+
Sbjct: 456 EISDTRWYYGDKARLRQIVFNLLSNAVKFTEKG---FVSVGLMEEKTHDGNYLTIKVQDS 512

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G+    L +  +PF Q  +    R  GTGLGL + K + +   G   + S   +GT  
Sbjct: 513 GIGIAQEALGRIFQPFEQAESHTTRRFGGTGLGLAIVKQIAELMNGSVVVHSEVGRGTCF 572

Query: 805 EI 806
           E+
Sbjct: 573 EV 574


>gi|116328668|ref|YP_798388.1| sensor histidine kinase of a two component response regulator
           [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116121412|gb|ABJ79455.1| Sensor histidine kinase of a two component response regulator
           [Leptospira borgpetersenii serovar Hardjo-bovis L550]
          Length = 865

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 107/807 (13%), Positives = 236/807 (29%), Gaps = 79/807 (9%)

Query: 44  PCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELP 103
                             V +  Y   E  F+FDP                   +++   
Sbjct: 84  EILAQEGDCGNLSPESPGVESIFYKLPEPAFLFDPSTL------------RFLAVNDAAI 131

Query: 104 KTIGNYAFKMIGMRLCDVSDILH-IDPNNHIGD-LLKRQNTWYGKTTLWPIEGTNLYVPI 161
              G    +  GM L ++       D    I +   +      G    W  +   LYV I
Sbjct: 132 HLYGFSREEFAGMNLLEIRPEEDRADMETAIQNVAKETGIRSRGVWRHWRKDKKFLYVKI 191

Query: 162 DLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEK 221
               + +            F ++ +    ++       L +      E +    S+    
Sbjct: 192 TTNRISLGDS---------FAVLTILTNVSETIETSYALRQI---RAEKQSIIESMSDRY 239

Query: 222 YDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLN 281
           + +          R         +      ++        + S                 
Sbjct: 240 FALSKDWRFISANRQSLITLGKPKEELIGRNIWDLYPGASVRSFRDKFELAVRTRKPITF 299

Query: 282 QYTKKQYFGTLQNNSKESFEYLSHR-NHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN 340
           +Y   +    ++       E +S      +     D  +N+  E   K P    V     
Sbjct: 300 EYKIIETGNVMEFRVFPFEEGVSVFFQDITEKRKRDSEQNILKEIALKIPKASSVKESFE 359

Query: 341 LFY--------ANPSFLLLT--KYKSVDDIEIAGGLSTLLDAPKL--------SDNNAIK 382
           + +         N +           +++              ++             I 
Sbjct: 360 ILFETICKGTFWNFAQTWRFQNGKIVLEENSPWYSTEATFLRYRIACFETGFSPGEGLIG 419

Query: 383 PVMLYRSDRTCIAASARLHTIQ-----------------WNRENSLAMTFIPFEKANQFP 425
            V      R         +  +                      +  + F    + +   
Sbjct: 420 EVFSTHKIRFVNDVQKEKNFKRTGFVFQTGIRSWIAIPLRTGHETYVLEFCSQIELDSVN 479

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
             +    +  + ++     ++ E E        + + D   I   +G I+  N A  ++ 
Sbjct: 480 SYIQMFELISDQIEVLFKNKESEEEKDHF---FKLSGDMFQISTLDGQIIERNHAWEEVL 536

Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
           GY  E++        +  N  + M + L  +       ++       TK  +  ++    
Sbjct: 537 GYTREELNGIDLVKIVHPNDRNKMLNTLVSVRKYGKNLSIA--LRYVTKHGRTRTILWKT 594

Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
              P       T  DI+E +  + +L +  K  ++ +S   DF    SH+++ PL  I  
Sbjct: 595 IVSPEHRLVYTTGKDITEIQNTQLQLENMAKELQRSNSDLEDFAFIASHDLQEPLRKIKA 654

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
           F + +  +      +   ++Y   +  S + + +++  LL  S+I+S           L 
Sbjct: 655 FGDRLLKRN--SNLDSESVDYLQRMFFSAHRLSNLIEGLLSYSRIKSRAKPFQL--FDLR 710

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP-SGGQ 724
           + + ++I  +++Y  EK   +     + I     D   +  +  N++ N I F      +
Sbjct: 711 KILKDSIGDLEIYIKEKNARV---VDSEIGFAWCDPFQMGTVFQNLIKNGIKFNQSENPE 767

Query: 725 IIISTTHT--SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
           + I           + +   D G+G       K    F ++ +  +   EG G+GL + K
Sbjct: 768 VNIRCIPHPIEPNWIQITFADNGIGFDKKHDGKIFTLFQRLHS--REDYEGNGIGLAVCK 825

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFP 809
            +++ + G+ Y  S   KG+   +  P
Sbjct: 826 KIIEFHGGRIYAESVLQKGSTFYVDLP 852


>gi|114778017|ref|ZP_01452917.1| sensory box histidine kinase/response regulator [Mariprofundus
           ferrooxydans PV-1]
 gi|114551623|gb|EAU54176.1| sensory box histidine kinase/response regulator [Mariprofundus
           ferrooxydans PV-1]
          Length = 903

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 96/602 (15%), Positives = 192/602 (31%), Gaps = 62/602 (10%)

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
           L +     +    S+L +     +++ +   +       +   +    +         S 
Sbjct: 178 LASRLQHKIAEPISALAKLMRQMSVDGDYSLRTTNPAFNRETEELLVGFDQMAAEIEHSF 237

Query: 314 Y--------FDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKY--------- 354
                      + E      V+  P+P  +     G+L + N + L L            
Sbjct: 238 SEAEEHHKHLQQSEERFRTIVELAPVPVIITRPSDGHLLFYNQAALKLFGVVTDGVSGRF 297

Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
            + D  +       L+   +         + +   +      S  ++ +++    +L   
Sbjct: 298 SAPDFYQHPEQRQQLMQTLETEGEIHGYELEVVGVNDKPFWISLSMNVMRFEGAPALFSA 357

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII 474
           F+   +     + + +N    E    +     ++    +L S L+   D    I  +G++
Sbjct: 358 FVDITEQKNVEQVLEKNNQLLEQRVAKRT-AALQATKDELQSTLDNMIDTYYRIRADGVV 416

Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
              + +V  L GY   +I                    L + L       + +      K
Sbjct: 417 ERASASVFSLLGYQPSEIAGLSLQALSVDGQQ---FTQLADALRQHDGAIINQKVQLKHK 473

Query: 535 EEKLLSLRIIIKKLPFSSCYS----LTMHDISEWKQE--KNKLSHAKKIAEKESSHKSDF 588
               +   I  + +             + DIS+  Q   + +    K    +        
Sbjct: 474 SGHAIWASISARVMKDEQGKVTGVEGVLRDISQLVQADLQKQEMENKMTHVQRLESLGIL 533

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
              ++H+    L AI+G +E+ +      L      +    I        D+   +L  S
Sbjct: 534 AGGIAHDFNNILAAIMGNAELAQFNALDGLP---VQQELKNIIGGSARAADLCKQMLAYS 590

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIA 708
               G+       V++   V + + L+ +    K I ++   +N +P + AD   ++QI 
Sbjct: 591 ----GQGMFVKSEVNITTLVEKELQLIDISI-SKNISLKLELSNVLPSVCADKTQMQQII 645

Query: 709 LNILSNAIHFT--PSGGQIIISTT-----------------HTSNEEVILRVRDTGVGMT 749
           +N+++NA         G I I TT                     E V+L V D G GM 
Sbjct: 646 MNLVTNAAESIGEEKQGDITIMTTVIEADSKALACPYIDAIREPGEYVLLEVTDNGCGMD 705

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
              + K   PF         +  G GLG+     +V A+ G   I S P  GT  +I+ P
Sbjct: 706 KATMGKIFDPFFTT------KFTGRGLGMSAVLGIVRAHGGTIQIDSKPGSGTCFKILLP 759

Query: 810 LY 811
           + 
Sbjct: 760 VS 761



 Score = 46.6 bits (109), Expect = 0.020,   Method: Composition-based stats.
 Identities = 20/180 (11%), Positives = 54/180 (30%), Gaps = 8/180 (4%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL--KRQNTWY 144
           + I A G ++  S  +   +G    ++ G+ L  +S  +       + D L         
Sbjct: 408 YRIRADGVVERASASVFSLLGYQPSEIAGLSLQALS--VDGQQFTQLADALRQHDGAIIN 465

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            K  L    G    +   ++A  +     + +G  G  ++             + ++ K 
Sbjct: 466 QKVQLKHKSGHA--IWASISARVMKDEQGKVTGVEG--VLRDISQLVQADLQKQEMENKM 521

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
           +H+  ++          +D  +  +         + ++L      ++             
Sbjct: 522 THVQRLESLGILAGGIAHDFNNILAAIMGNAELAQFNALDGLPVQQELKNIIGGSARAAD 581


>gi|78184127|ref|YP_376562.1| multi-sensor signal transduction histidine kinase [Synechococcus
           sp. CC9902]
 gi|78168421|gb|ABB25518.1| multi-sensor signal transduction histidine kinase [Synechococcus
           sp. CC9902]
          Length = 696

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 73/396 (18%), Positives = 165/396 (41%), Gaps = 45/396 (11%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            ++    ++  S++   +DG  +++  G I+  N    +LF +    +  +     L + 
Sbjct: 290 EELTAAQVKQQSLIATMADGAILLDATGRIVLANPTSRRLFRWEGRSLEGQELVEELPEL 349

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDI 561
               ++  L  +L         + ++G     + L + +   +          ++T+ D+
Sbjct: 350 LSIEVHSALDALLFSSSDSEDLRCSVGEPA--RTLRIVMQAVRDASGESLKGIAVTIQDL 407

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           +                 + ++ +S F++ VSHE+RTPL  I  + E + +     L   
Sbjct: 408 TR--------------EVELNAAQSRFISNVSHELRTPLFNIKSYVETLHD-LGDQLTED 452

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
              E+    +   + +  +VND+LD+S++ESG+  + FE ++L  A+ + +   +L A +
Sbjct: 453 EKKEFLGVANDETDRLTRLVNDVLDLSRLESGR-TVQFETMNLRPAMEQTLRTYRLNAED 511

Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE------ 735
           K + +    A ++P +L +   + Q+  N++ NA+ F+  GG + +      +       
Sbjct: 512 KTVELELDVAPDLPDVLGNWDLLLQVFDNLVGNALKFSRPGGILSMRAYVWPDTCRVEAP 571

Query: 736 -----------------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
                             + + + DTG G++  + ++    F ++ N+      GTGLGL
Sbjct: 572 ISTKSEGPTCTLTSPLPRLRVEIADTGYGISAQDQQRIFDRFYRVENAVHTEV-GTGLGL 630

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
            + + ++D +  +  + S    GT      PL    
Sbjct: 631 SIVRGILDKHGAQVSMVSELDVGTTFWFELPLEQAD 666



 Score = 38.1 bits (87), Expect = 6.6,   Method: Composition-based stats.
 Identities = 46/346 (13%), Positives = 101/346 (29%), Gaps = 31/346 (8%)

Query: 116 MRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREF 175
                V  I   DP   I   +    T  G+     +    L +P +L   P     R+ 
Sbjct: 111 RSSRSVRYIFFADPEGVIYLGIPISATPNGEDGELRL-NRRLELPDELRRRPQNPLVRQ- 168

Query: 176 SGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR 235
                 G V    V          +     + +E     +++ +E               
Sbjct: 169 -HLTPQGTVTDVFVPLIRSGTYYGVLGLGVNPNETALASAALTREVTVAVFIS------- 220

Query: 236 MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN 295
               +  L    A  + +  T     L     S+   +    ++L    +     T  N 
Sbjct: 221 ----IWVLVILGAVFNALTITRPVKELLRGVRSVASGDFQARVDLPMGGELGELLTGFNA 276

Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYK 355
                E     N   L+A   + ++L     D       + + G +  ANP+   L +++
Sbjct: 277 MASQLEAYDEANIEELTAAQVKQQSLIATMADG---AILLDATGRIVLANPTSRRLFRWE 333

Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
               +E    +  L +   +  ++A+  ++   SD   +  S          E +  +  
Sbjct: 334 GRS-LEGQELVEELPELLSIEVHSALDALLFSSSDSEDLRCSV--------GEPARTLRI 384

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE-----VMQLCS 456
           +     +   E++    +  +D+   +     +         +L +
Sbjct: 385 VMQAVRDASGESLKGIAVTIQDLTREVELNAAQSRFISNVSHELRT 430


>gi|283782285|ref|YP_003373040.1| multi-sensor signal transduction histidine kinase [Pirellula
           staleyi DSM 6068]
 gi|283440738|gb|ADB19180.1| multi-sensor signal transduction histidine kinase [Pirellula
           staleyi DSM 6068]
          Length = 805

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 94/756 (12%), Positives = 221/756 (29%), Gaps = 83/756 (10%)

Query: 117 RLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPI---------DLAALP 167
               +      +        L   N+          +    Y  +         D    P
Sbjct: 60  SWRQLVHNDDAEKLYEAWSSLLAGNSENYSVDYRFCDRWGEYRWLREQVAVVSTDQHGRP 119

Query: 168 IYSR--NREFSGFRGFGIVHVN-RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEK----- 219
           +     +REF+       +             G  L    S L E  + H    +     
Sbjct: 120 VEMVVLHREFTPTVQRDKMLDAHDEIVTKMTEGMPLMAMLSKLAETIEAHFPGSRVSVMM 179

Query: 220 ------EKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV--LKTEKYPLLTSEESSLPE 271
                     + +   PP  +   + +    E+ A        +      +  +  ++P 
Sbjct: 180 LDAQREHLGIVAAPSMPPELVTTFSNIPVGPEFGACGAAAYLKQRVIVHDVREDSRTIPY 239

Query: 272 QEDFHTINLNQYTKKQYFGTLQNNSK--ESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
                  +L            Q        +               +    L    +++ 
Sbjct: 240 LPILEPYDLRAIWSHPILDGSQEVIGTFALYRSRPFTPDAEEIRLTEMAARLAGLAIERH 299

Query: 330 PIP-FFVYSHGNL---------------------FYANPSFLLLTKYKSVDDIEIAGGLS 367
                 V                            Y  P    +  Y   D ++    + 
Sbjct: 300 SQAELLVRREDRFRRLAESSRIVPWEADGVSDVYLYVGPQAEKIWGYPQADFLKPRFWID 359

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
            L+           + +      +            +    +   +        N     
Sbjct: 360 HLVHPDD-------REMCEELCSKIIAPQELYEWDYRTVGADGRTIWVHDVVNVNWRGSR 412

Query: 428 MPQ-NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
           + Q  G   +  D +  + ++     +   + E ++D I+ ++  GI    + A + + G
Sbjct: 413 LAQMFGYLIDITDRKQAEEQLRESEERYRLLAEQSADMISRVDPSGIWRYVSCACTSVLG 472

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
           Y   +++       +  +        L  +                 K    + L  + K
Sbjct: 473 YDPSELVGTYTMDVVHVDDRREAAELL--MAIDRWPDVPNFTCRARHKHGHYVLLETMGK 530

Query: 547 KLPFSS-----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSH--KSDFLARVSHEIRTP 599
            +  +             DI+  +++  ++   +                A ++HE+  P
Sbjct: 531 PIYDAHTGRLAEIIFFSRDITSREEQSLRVRAREAELAHAERLSTMGQLAAELAHELNQP 590

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRY--IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           L A+  +++  +    G     +   +++   + +      ++V  +    +    +  L
Sbjct: 591 LYALANYAQAAQGLVAGWEVPNKQMLLDWTAQMMQQARRASEVVRRITSFVR----QGEL 646

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
             +PV+L+E V E   L+++ A ++ I +      ++P +  D   ++Q+ LN++ N + 
Sbjct: 647 DRQPVNLNECVEEIGMLMEISARQRGIDLVYELGESLPLVKVDRLLIEQVILNLVRNGLE 706

Query: 718 FTP--SGG--QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
            T    GG  ++ + T+ T+   V LRV D G G+ N +L    +P+            G
Sbjct: 707 ATEPSEGGAAKLTVETSTTAQA-VRLRVIDQGRGIPNDKLSCLFEPYFTTKPD------G 759

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           TG+GL + +  ++++ G  +  + P  G       P
Sbjct: 760 TGIGLAICRRAIESHGGVIWGENNPGGGATFAFELP 795



 Score = 54.3 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 21/199 (10%), Positives = 54/199 (27%), Gaps = 8/199 (4%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
            +D  G  + +S      +G    +++G    DV  +          +LL   + W    
Sbjct: 453 RVDPSGIWRYVSCACTSVLGYDPSELVGTYTMDVVHVDD---RREAAELLMAIDRWPDVP 509

Query: 148 --TLWPIEGTNLYVPIDLAALPIYSR-NREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
             T         YV ++    PIY       +    F          +     +  + + 
Sbjct: 510 NFTCRARHKHGHYVLLETMGKPIYDAHTGRLAEIIFF--SRDITSREEQSLRVRAREAEL 567

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
           +H   +        +  +++        +     +         +K  +L      +  +
Sbjct: 568 AHAERLSTMGQLAAELAHELNQPLYALANYAQAAQGLVAGWEVPNKQMLLDWTAQMMQQA 627

Query: 265 EESSLPEQEDFHTINLNQY 283
             +S   +     +   + 
Sbjct: 628 RRASEVVRRITSFVRQGEL 646


>gi|188996682|ref|YP_001930933.1| histidine kinase [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931749|gb|ACD66379.1| histidine kinase [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 337

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 73/356 (20%), Positives = 152/356 (42%), Gaps = 36/356 (10%)

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
           L S L+   +G+ +++    IL  NR   +    P  +   K F   +  N       YL
Sbjct: 16  LISFLDYLKEGVIVVDENKNILFVNRFAQRFLNTPDYE--GKHFKEVINDN-------YL 66

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH 573
             I+S +  +  +        +     + +            + + DI+           
Sbjct: 67  YSIISHEYDKDTKLEVNI---DSSKYLVNV----YHIKGKKIIHLQDIT----------- 108

Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
                E     K DF++ VSHE++TP++ +    E I+ +    + +   +++ +   + 
Sbjct: 109 ---PFEIYKQAKKDFVSNVSHELKTPISVLKSAMETIEEE----IKDSNILKFVDMAKKR 161

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693
            N +  ++NDLL ++++ES +  ++ +   L + V +    +Q    +K I ++ +   +
Sbjct: 162 INQMDSLINDLLILARLESQEDLVNKKKYLLYKQVEDIFEDLQHLTKDKNIKLKNNVPKD 221

Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753
              + AD + +     N++ NAI +    G + ++   T  +  I+ V DTG+G+    +
Sbjct: 222 F-EVYADEQKLSIALKNLIENAIKYNVQNGTVEVN-AKTDGKYDIISVIDTGIGIPPESI 279

Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
               + F ++  S+     GTGLGL + K + +A+ GK ++ S   KG+   I  P
Sbjct: 280 PLVFERFYRVDKSRSRNIGGTGLGLSIVKHITEAHKGKVWVESQVGKGSKFYIKIP 335


>gi|157960737|ref|YP_001500771.1| Hpt sensor hybrid histidine kinase [Shewanella pealeana ATCC
           700345]
 gi|157845737|gb|ABV86236.1| Hpt sensor hybrid histidine kinase [Shewanella pealeana ATCC
           700345]
          Length = 1333

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 93/343 (27%), Positives = 158/343 (46%), Gaps = 13/343 (3%)

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLS 540
            K  G   E + + P  +     T +  + +L +I    L  +L     L    +     
Sbjct: 582 EKYLGLTPEQLYQTPQLLLEFLQTHADDHEFLNDIQQSHLSDSLYTTLKLNIDGKLSWFQ 641

Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
           L  +  K+  +  ++ T+ DI+  KQ++ +L  A+ IAE  +  KS FLA +SHEIRTP+
Sbjct: 642 LTGVCTKIDKNRHWTFTLVDITLLKQKQAELDEARLIAESATEAKSRFLAMMSHEIRTPI 701

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
           + I+   E++       +           +  SGN +L+IVND+LD SKIE+GK+ L   
Sbjct: 702 SGILSLLELM----VPHINTHEISGIHKNLTHSGNNLLNIVNDVLDFSKIEAGKLGLSPA 757

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFT 719
              L   + E      ++   K I  +      +   +  D   +KQ+  N+L+NA  FT
Sbjct: 758 VCQLSSFICELAQPHIVHVERKGIKFKLWLDPKLAYSLTLDHLRLKQVLNNLLNNASKFT 817

Query: 720 PSGGQIIIST----THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
             G +I +S     +  + + +   V DTG+G++  ++ K   PF Q+  S + R  GTG
Sbjct: 818 TEG-EIWLSVDLISSTDTEQTIGFAVTDTGIGISEKDITKLFIPFEQVDLSSERRFSGTG 876

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF--PLYDTSHP 816
           LGL + + +V    G+  + ST  +G+        P+     P
Sbjct: 877 LGLSICEQLVKLMGGEISVTSTQGQGSTFRFSLSFPIAAVEVP 919


>gi|300718124|ref|YP_003742927.1| Signal transduction histidine-protein kinase [Erwinia billingiae
           Eb661]
 gi|299063960|emb|CAX61080.1| Signal transduction histidine-protein kinase [Erwinia billingiae
           Eb661]
          Length = 908

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 79/241 (32%), Positives = 132/241 (54%), Gaps = 8/241 (3%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  AKK A++ +  KS+FLA +SHE+RTPL  +IGF+     Q      N    +Y + 
Sbjct: 278 ELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFT----RQTLKTPLNITQRDYLHT 333

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I+RS N +L I+ND+LD SK+E+GK+ L   P  L + + E + L+   A+EK + +  S
Sbjct: 334 IERSANNLLSIINDVLDFSKLEAGKLVLETIPFPLRDTLDEVVVLLAQSAHEKGLELTLS 393

Query: 690 FANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDTG 745
               +P   + D   ++QI +N+L NAI FT  G    +I + +  T+   + +++ DTG
Sbjct: 394 IQPEVPDNTIGDPLRLQQIIINLLGNAIKFTERGNIDIRIELRSLSTNRVNLEVQIHDTG 453

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G++  +  +  + F Q   S   R  GTGLGL + + +V+   G+  + S   +G+   
Sbjct: 454 IGISEKQQSQLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGEISLHSRMNQGSTFW 513

Query: 806 I 806
            
Sbjct: 514 F 514


>gi|290473792|ref|YP_003466666.1| hybrid sensory histidine kinase in two-component regulatory system
           with RcsB and YojN, regulates capsule biosynthesis, cell
           division genes, OsmC expression [Xenorhabdus bovienii
           SS-2004]
 gi|289173099|emb|CBJ79872.1| hybrid sensory histidine kinase in two-component regulatory system
           with RcsB and YojN, regulates capsule biosynthesis, cell
           division genes, OsmC expression [Xenorhabdus bovienii
           SS-2004]
          Length = 921

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 92/368 (25%), Positives = 160/368 (43%), Gaps = 29/368 (7%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           ++E        I+ +   GI+       IL  N            ++    +T  L    
Sbjct: 328 RLEEHEQFNHKIVASAPVGIS-------ILRINDGA----NILSNELA-HNYTRMLTYED 375

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
              +   +           ++ +    T     L +  +  +          + DIS   
Sbjct: 376 QKRIVDII----CDKTSSYIDVV----TSNNNHLQISFVHSRYRNEEVAICVLVDISTRV 427

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + +  L      AE+ +  KS FLA VSHE+RTPL  IIG  E++++             
Sbjct: 428 KMEQSLQEMASAAEQANQAKSMFLATVSHELRTPLYGIIGNLELLQSHTLPS----ESAR 483

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
             + ++ + +L+L I++D+LD SKIES ++ +  +  S  E V   IS       +K + 
Sbjct: 484 LLSAMNNASSLLLKIISDILDFSKIESKQLKIDSKKFSCKEIVLHVISNYLPLIVKKELG 543

Query: 686 IRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVILRVRD 743
           +      +IP I+  D   ++QI  N+L+NAI FT +G   I IS  H+    + + ++D
Sbjct: 544 LYCYIEPDIPDIINNDPVRLQQIISNLLNNAIKFTETGSVVITISIKHS---YLYISIKD 600

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TGVG+ +    +  +PF QI  ++Q   +GTGLGL + + +++   G     S    G++
Sbjct: 601 TGVGIEDKLQTQLFEPFFQINANKQTFSQGTGLGLAICEKLINLMDGDIEFISQQYIGSI 660

Query: 804 IEIIFPLY 811
             I  PLY
Sbjct: 661 FSIRLPLY 668


>gi|296810904|ref|XP_002845790.1| DRK1 histidine kinase [Arthroderma otae CBS 113480]
 gi|238843178|gb|EEQ32840.1| DRK1 histidine kinase [Arthroderma otae CBS 113480]
          Length = 1309

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 73/265 (27%), Positives = 128/265 (48%), Gaps = 22/265 (8%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           +S  +    + + A++ AE  +  KS+FLA +SHEIRTP+  IIG +++  +        
Sbjct: 692 VSSLRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDD---LK 748

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
           P   E  N +    N +L I++D+LDISKIE+ +M +   P ++   V  A+  + + AN
Sbjct: 749 PYPREMLNVVHSLANSLLTIIDDILDISKIEANRMVIESIPFTMRGTVFNALKTLAVKAN 808

Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-------- 731
           EK + +     +++P  ++ D   ++QI LN++ NAI FT  G ++ +            
Sbjct: 809 EKFLNLTYQVDSSVPDYVIGDPFRLRQIILNLVGNAIKFTEHG-EVTLEIKKHVPPPPAE 867

Query: 732 ---------TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
                             V+DTG+G+   +L+     F Q   S   +  GTGLGL ++K
Sbjct: 868 GEPEREVCAEDEYAYEFSVQDTGIGIAKDKLDMIFDTFQQADGSTTRKFGGTGLGLSISK 927

Query: 783 AMVDANMGKFYIFSTPAKGTLIEII 807
            +V+   G  ++ S   +G+     
Sbjct: 928 RLVNLMGGDVWVTSEYGRGSTFHFT 952


>gi|225870858|ref|YP_002746805.1| alkaline phosphatase synthesis sensor protein [Streptococcus equi
           subsp. equi 4047]
 gi|225700262|emb|CAW94499.1| putative alkaline phosphatase synthesis sensor protein
           [Streptococcus equi subsp. equi 4047]
          Length = 441

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 84/413 (20%), Positives = 173/413 (41%), Gaps = 35/413 (8%)

Query: 404 QWNRE----NSLAMTFIPFEKANQFPENMPQNGIEPED-VDTRINKRKMEIEVMQLCSIL 458
           +W RE    +   +T           +         E   D    + +++     + ++ 
Sbjct: 52  RWEREFRALHHHLLTASDHFLLVGQADLSAYAKQLTELKSDLLQKEARLKALSKNVEAVT 111

Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
              + G+ +++ +  +L T+++       P      KP  V LE      +   + ++  
Sbjct: 112 SHLTMGMLLVSNQRELLLTSKS------LPAYFPEAKPPFVVLEDLKRMDLIALVNQVFD 165

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCYSLTMHDISEWKQEKNKLSHAKK 576
               QTL+K   G    + +L + ++    +        + ++D++  +  +        
Sbjct: 166 QK--QTLKKELTGLHDGDLILEVTLVPIFNQSHVVKEILVLLYDLTAIRHYE-------- 215

Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
                     +F+A  SHE+RTP+T+I GF+E IK             ++ + I      
Sbjct: 216 ------RLNLEFIANASHELRTPVTSIKGFAETIKEMPDDETSLKE--DFLDIIYNESLR 267

Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696
           +  IV  LL +SK  + K  L      L   +      ++    +K++ +  +  ++I  
Sbjct: 268 LERIVEHLLTLSK--ANKTPLDLTEFQLRNFLLYTGQSMRPQLEQKQLELSYALEDSI-V 324

Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKA 756
           + +D   + QI LN+LSNAI +T +GG+I +S+   +   V + V DTG+G++  EL++ 
Sbjct: 325 VTSDQYLLSQIMLNLLSNAIQYTDNGGRIQLSSQRVAGG-VAITVADTGIGISQIELDRI 383

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            + F ++   +  +  GTGLGL + K +     G+  + S   +G+   +  P
Sbjct: 384 FERFYRVNKGRSRQSGGTGLGLAIVKELSQLLGGQITVTSQLGEGSQFTLFLP 436


>gi|2951933|gb|AAC06271.1| hybrid histidine kinase homolog [Pseudomonas fluorescens]
          Length = 983

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 79/371 (21%), Positives = 155/371 (41%), Gaps = 18/371 (4%)

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT---VFLEQNTPSVMNH 511
             IL+       +++R+G IL  N    +  G  +EDI   PF     F        + H
Sbjct: 41  RIILDRMYHFAGLLDRDGTILEINLPALEGAGLRIEDIRGTPFWEARWFAVSQESKALQH 100

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM----HDISEWKQE 567
            L +  +       +    G    E+ +     +  L  +      +     +I+  K+ 
Sbjct: 101 QLVQRAAAGEFIRCDLEVYGEGSGEQTIVTDYSLTPLRDNHGEVAFLLAEGRNITSKKKY 160

Query: 568 KNKLSHAK-------KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           + +++          +   K    KS F + +SHE+RTPL+ I+G  + +         +
Sbjct: 161 EQEIARKNSELEKLVEQIRKLDEQKSRFFSNLSHELRTPLSLILGPVDEML---VSSEFS 217

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
            R+      I R+   +L  VN+LLD++K+++GK+ L +E + +   V +  +  + +A 
Sbjct: 218 ERHDTNLASIRRNAVTLLRHVNELLDLAKVDAGKLQLAYERIDIKGLVEDIAAHFEAHAK 277

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
           ++RI      +     + AD   +  +  N+++NA + TP GG+I            +L 
Sbjct: 278 QRRIRCAV-LSPGPILVEADPERIGHVVFNLMANAFNATPDGGRISCRVEIGRGNRCLLT 336

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V D+G G+     ++  + F Q          G+GLGL + K  ++ + G   +   P  
Sbjct: 337 VSDSGPGIPPEMRQRIFERFQQGLEDHGQARAGSGLGLAIVKEFIELHGGTVTVGEAPGS 396

Query: 801 GTLIEIIFPLY 811
           G + ++  P +
Sbjct: 397 GAIFQVEIPAF 407



 Score =  214 bits (544), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 84/652 (12%), Positives = 205/652 (31%), Gaps = 59/652 (9%)

Query: 177 GFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI-KKGHSSVEKEKYDIFSQQSPPPHLR 235
           G R    V  +     P    +  ++    L +  +    S           +     + 
Sbjct: 330 GNRCLLTVSDSGPGIPPEMRQRIFERFQQGLEDHGQARAGSGLGLAIVKEFIELHGGTVT 389

Query: 236 MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN 295
           +     S   +          +      S        +     +++    ++     Q +
Sbjct: 390 VGEAPGSGAIFQVEIPAFAPPQAVVRSGSTGEQAFSHDMSLEADIDIRPGRRLVSDTQAD 449

Query: 296 SKESFEYLSHRNHPSLSAYFDEGENLTP---------ETVDKCPIPFFVYSHGNLFYANP 346
                    +     L A     E               +   P    +        +  
Sbjct: 450 LPRILIVEDNEEMLHLIARTLSSEFSVECAGNGEQGLGLMLANPPDLVIRDLMMPGMSGE 509

Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
             + L + ++         +  L+ + +  ++  +  +     D             +  
Sbjct: 510 KLIRLMREEA-----QLTQIPVLVLSARADEDVRMTLLANMVQDYVTKPFFIPELLSRVR 564

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE---VMQLCSILEATSD 463
                    +  +   +                 +  +R +E +     +  +I E ++ 
Sbjct: 565 NLVMTRRARLALQDELKTHNADLVQLTRELISGRQAIQRSLEAQQKSERRWRAIHENSAV 624

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
           GIA+++ +   ++ N A  ++ GY  ED+L          +  ++ +  L  +L     Q
Sbjct: 625 GIAVVDLQWRFVNANPAFCRMLGYTQEDVLGYSVLELTHPDDRNITDQRLHHLL-DGRLQ 683

Query: 524 TLEKITLGSTKEEKLLS----LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579
           T         K+   L     + +I             + DI E K+ +++L  A+    
Sbjct: 684 TYHHQKRFLHKDGHSLWTRSSVSVIPGSGDTPPLMIGVVEDIDEQKRAEHELERARSELA 743

Query: 580 KESS--HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN-PRYIEYANYIDRSGNL 636
           +        + +A ++HE+  PL A++  S   +        N    +     + R    
Sbjct: 744 RVMRVTAMGELVASITHELNQPLAAMVANSHACRRWLNSNPPNLKEGVASVEAVVRDSQR 803

Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696
             ++V  L    +    +  +  EP++L   V E +  V+     + I + T+   ++P 
Sbjct: 804 AAEVVLRLRMFMR----RGEIQHEPLNLSGVVEEVLDYVRESLVMQSISLETTLPTDLPV 859

Query: 697 ILADL------------RSVKQIALNILSNAIHF-TPSGGQIIISTTHT-SNEEVILRVR 742
           +LAD              +++         AI   +P+  ++ +    +  N ++ L V 
Sbjct: 860 VLADRVQLQQVVLNLLLNAIE---------AIQARSPNVPRLKLRICRSPDNGDLQLEVE 910

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
           D G G+   + E+  +PF    +      +G G+GL + + +++A+ G+  +
Sbjct: 911 DNGCGVPALQAERIFEPFYTTKS------QGMGMGLAICRTILEAHGGQLNL 956



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/230 (7%), Positives = 61/230 (26%), Gaps = 6/230 (2%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID-PNNHIGDLLKRQ-NTWYGK 146
           +D        +    + +G     ++G  + +++     +  +  +  LL  +  T++ +
Sbjct: 629 VDLQWRFVNANPAFCRMLGYTQEDVLGYSVLELTHPDDRNITDQRLHHLLDGRLQTYHHQ 688

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                 +G +L+    ++ +P              G+V             +R   + + 
Sbjct: 689 KRFLHKDGHSLWTRSSVSVIPGSGDTPPLM----IGVVEDIDEQKRAEHELERARSELAR 744

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
           +  +      V    +++    +         +    +     K+ V   E     +   
Sbjct: 745 VMRVTAMGELVASITHELNQPLAAMVANSHACRRWLNSNPPNLKEGVASVEAVVRDSQRA 804

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
           + +  +            +      +     +           SL     
Sbjct: 805 AEVVLRLRMFMRRGEIQHEPLNLSGVVEEVLDYVRESLVMQSISLETTLP 854



 Score = 45.0 bits (105), Expect = 0.054,   Method: Composition-based stats.
 Identities = 30/261 (11%), Positives = 70/261 (26%), Gaps = 16/261 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLL---KRQNTWYG 145
           +D  G + EI+    +  G     + G    +         +  +   L        +  
Sbjct: 54  LDRDGTILEINLPALEGAGLRIEDIRGTPFWEARWFAVSQESKALQHQLVQRAAAGEFIR 113

Query: 146 KTTLWPIEGTNLYVPID-LAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
                  EG+     +   +  P+   + E +     G                 + +K 
Sbjct: 114 CDLEVYGEGSGEQTIVTDYSLTPLRDNHGEVAFLLAEG--RNITSKKKYEQ---EIARKN 168

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
           S L ++ +    ++++K   FS  S        + +    +      +  +     L + 
Sbjct: 169 SELEKLVEQIRKLDEQKSRFFSNLSHE-LRTPLSLILGPVDEMLVSSEFSERHDTNLASI 227

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
             +++        +N      K   G LQ  + E  +        +        +     
Sbjct: 228 RRNAVTL---LRHVNELLDLAKVDAGKLQ-LAYERIDIKGLVEDIAAHFEAHAKQRRIRC 283

Query: 325 TVDKCPIPFFVY-SHGNLFYA 344
            V   P P  V      + + 
Sbjct: 284 AV-LSPGPILVEADPERIGHV 303


>gi|320352967|ref|YP_004194306.1| PAS/PAC sensor hybrid histidine kinase [Desulfobulbus propionicus
           DSM 2032]
 gi|320121469|gb|ADW17015.1| PAS/PAC sensor hybrid histidine kinase [Desulfobulbus propionicus
           DSM 2032]
          Length = 541

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 79/388 (20%), Positives = 159/388 (40%), Gaps = 38/388 (9%)

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
           + +   + ++ + +   SIL +  DG+ +++  G I   N A+ ++FGY  E++     +
Sbjct: 33  ELKAKIKDLDQQRVFFQSILNSIPDGVVVMDPSGKIRQANPALCRMFGYSNEELAGLDPS 92

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----Y 554
           V  E N     +                       K+ ++     +  ++          
Sbjct: 93  VLYENNCAIFRHDDF----------PTTWCRRFVRKDGRVFLGETLNSEIRDDQGGLLGT 142

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESS--HKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
              + D+SE  +   +    ++   +             ++H+    L AI+G++E+   
Sbjct: 143 LELIRDVSERLKVIRQQRQLEEQLRQSQKMAAIGTLAGGIAHDFNNLLAAILGYAELALL 202

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
           +   P G     E    I ++G    ++VN +L  S+ E+ K      P+     + E I
Sbjct: 203 KL--PPGGALQRE-IRQILKAGGKASELVNQILAFSRKETTK----RIPIQPGVLIKEVI 255

Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS-GGQIIISTT- 730
            L++       I IR   A     ILA+   + Q+ +N+ +NA H     GG++ +S   
Sbjct: 256 KLLRGTIPS-TITIRERIAATDRMILANPTQLHQVVMNLCTNAFHAMEEQGGEMTLSLES 314

Query: 731 --------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
                       E + + V D G G+    LE+  +P+     S    G+GTG+GL +  
Sbjct: 315 VRKLLREKEEEREWIRISVADNGCGIEPATLERIFEPYFTTKPS----GKGTGMGLAVVH 370

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            +V+++ G+  + ST  +GT +++ FP+
Sbjct: 371 GIVESHGGRIEVKSTVGQGTTVQVYFPV 398



 Score = 41.6 bits (96), Expect = 0.56,   Method: Composition-based stats.
 Identities = 18/179 (10%), Positives = 52/179 (29%), Gaps = 16/179 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD--LLKRQNTWYGK 146
           +D  G +++ +  L +  G    ++ G           +DP+    +   + R + +   
Sbjct: 62  MDPSGKIRQANPALCRMFGYSNEELAG-----------LDPSVLYENNCAIFRHDDFPTT 110

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                +         +     I        G     ++             ++L+++   
Sbjct: 111 WCRRFVRKDGRVFLGETLNSEIRDDQGGLLGT--LELIRDVSERLKVIRQQRQLEEQLRQ 168

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
             ++    +      +D F+          +  +  L    A + ++ +  K     SE
Sbjct: 169 SQKMAAIGTLAGGIAHD-FNNLLAAILGYAELALLKLPPGGALQREIRQILKAGGKASE 226


>gi|223940128|ref|ZP_03631991.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [bacterium Ellin514]
 gi|223891230|gb|EEF57728.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [bacterium Ellin514]
          Length = 422

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 74/412 (17%), Positives = 158/412 (38%), Gaps = 53/412 (12%)

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
           +    +   +++  E   L ++     DG+ +I+    I+  N+AV++L G   +D   +
Sbjct: 19  DAEGLQTVVQRLASERSFLETLFNTIEDGVLVIDANSRIVYFNQAVTQLLGLKSDDAEGR 78

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--C 553
           P + FL +         L  + +   ++ +      +    + + L              
Sbjct: 79  PISDFLPEMNWKK----LAAMDTAGGQRVVRHEFEVNFPRPRFIRLYAAPLDGEAVGTSG 134

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
            +L +HD +E +Q        + I  +     +   A V+HEI  PL A+    ++++ +
Sbjct: 135 LALILHDATEARQ-----KTFEAIESERVQALTLLAASVAHEIGNPLNALHIHLQLMERE 189

Query: 614 --RFGPLGNPRYI-----------------------------EYANYIDRSGNLVLDIVN 642
             +   L   +                               +Y        N +  I+ 
Sbjct: 190 LKKLRSLPTEQVATGGLRARRAARAQASTVSDDLSEITAKMEQYLGVAKGEINRLDYIIT 249

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702
             L   +          +P SL+E V + ++L++   + + + ++      +P    D  
Sbjct: 250 QFLQALRP----TPPQLKPTSLNEVVEKTVTLLRPELDNRGLTVKEKLLRQLPSAPIDSV 305

Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
            ++Q+ +N+  NA+     GG + + T    +  V + V DTG G+   ++ +   PF  
Sbjct: 306 QLQQVLVNLFKNAMQAMTKGGVLTLQTGKGLDG-VWVSVADTGGGIPQEQINRIFDPFYT 364

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
                    +G+GLGL + + +V A+ G+  + S   +GT   I  PL++ S
Sbjct: 365 TKK------KGSGLGLMIVQRIVRAHNGRIELESHVGRGTTFRIWLPLHERS 410



 Score = 46.9 bits (110), Expect = 0.015,   Method: Composition-based stats.
 Identities = 34/284 (11%), Positives = 73/284 (25%), Gaps = 21/284 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           IDA+  +   ++ + + +G  +    G  + D    ++          L   +T  G+  
Sbjct: 51  IDANSRIVYFNQAVTQLLGLKSDDAEGRPISDFLPEMN-------WKKLAAMDTAGGQRV 103

Query: 149 LWPIEGTNLYVP--IDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
           +      N   P  I L A P+   + E  G  G  ++    + +   A  K  +   S 
Sbjct: 104 VRHEFEVNFPRPRFIRLYAAPL---DGEAVGTSGLALI----LHDATEARQKTFEAIESE 156

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
             +                   +P   L +  ++              +     L     
Sbjct: 157 RVQAL-----TLLAASVAHEIGNPLNALHIHLQLMERELKKLRSLPTEQVATGGLRARRA 211

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
           +          ++      +QY G  +         ++                   E V
Sbjct: 212 ARAQASTVSDDLSEITAKMEQYLGVAKGEINRLDYIITQFLQALRPTPPQLKPTSLNEVV 271

Query: 327 DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
           +K                    L       +D +++   L  L 
Sbjct: 272 EKTVTLLRPELDNRGLTVKEKLLRQLPSAPIDSVQLQQVLVNLF 315


>gi|251797174|ref|YP_003011905.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           sp. JDR-2]
 gi|247544800|gb|ACT01819.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           sp. JDR-2]
          Length = 549

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 79/386 (20%), Positives = 159/386 (41%), Gaps = 28/386 (7%)

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
           +     +    +  +     Q   I E TSD I +++ +  I   + + + + GY    +
Sbjct: 182 LRRTIAERNEMELSLHESEYQYRLIAENTSDLIVVMDPDHSIRYFSPSHAFVLGYSSLAL 241

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
            R      +  +   + N  +T+I++      L         + + +    + K +    
Sbjct: 242 NRAELDRIINPDDTKMFNQTITKIMNQKKA--LSMEIRFRHLDGRSIPFDSLCKPVEGKD 299

Query: 553 C----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                  +   DISE K+ +  L  ++K++        +  A V+HEIR PLT + GF +
Sbjct: 300 GRIEHIVIISRDISERKKAEEFLLQSEKLSIV-----GELAAGVAHEIRNPLTTLKGFLQ 354

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
                    + NP    Y + +      +  I ++LL ++K ++      +  V++ + +
Sbjct: 355 ------LYKIENPTMK-YGDLLRDELERIEIITSELLTMAKPQAAM----YVVVNVKDVI 403

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
            + +  +        I     +  +   +      +KQ+ LN+L NAI    +GG+I IS
Sbjct: 404 EQTLEFLTPQTLLNNIEFIREYEGDYFPVTCAKHQLKQVFLNLLKNAIESMSNGGEIHIS 463

Query: 729 TTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
               +  E ++ ++D G G+    L +  +PF        ++ +GTGLGL ++  ++   
Sbjct: 464 IQLDAAGECLIFIQDQGCGIPEEHLHRLGQPFY------SLKEKGTGLGLMISHKIIKQY 517

Query: 789 MGKFYIFSTPAKGTLIEIIFPLYDTS 814
            G+    S    GT IEI  P++D S
Sbjct: 518 HGRIVYDSKVDIGTRIEIRLPVHDNS 543



 Score = 46.2 bits (108), Expect = 0.021,   Method: Composition-based stats.
 Identities = 19/249 (7%), Positives = 57/249 (22%), Gaps = 5/249 (2%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTWYGKT 147
           +D    ++  S      +G  +  +    L  + +       N  I  ++ ++     + 
Sbjct: 217 MDPDHSIRYFSPSHAFVLGYSSLALNRAELDRIINPDDTKMFNQTITKIMNQKKALSMEI 276

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
               ++G +  +P D    P+  ++          I               + +K     
Sbjct: 277 RFRHLDGRS--IPFDSLCKPVEGKDGRIEHI--VIISRDISERKKAEEFLLQSEKLSIVG 332

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
                    +      +              K   L      + +++ +E   +   + +
Sbjct: 333 ELAAGVAHEIRNPLTTLKGFLQLYKIENPTMKYGDLLRDELERIEIITSELLTMAKPQAA 392

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
                     I                     +E        +         NL    ++
Sbjct: 393 MYVVVNVKDVIEQTLEFLTPQTLLNNIEFIREYEGDYFPVTCAKHQLKQVFLNLLKNAIE 452

Query: 328 KCPIPFFVY 336
                  ++
Sbjct: 453 SMSNGGEIH 461


>gi|308187945|ref|YP_003932076.1| hybrid sensory histidine kinase [Pantoea vagans C9-1]
 gi|308058455|gb|ADO10627.1| hybrid sensory histidine kinase [Pantoea vagans C9-1]
          Length = 911

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 84/333 (25%), Positives = 150/333 (45%), Gaps = 19/333 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           LF Y +   +  P    +               L   +   +             +++ +
Sbjct: 193 LFAYRLMRDVTGPIRNMVTTVDR-----IRRGQLDSRVEGYMLGELNILKNGINAMAMSL 247

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                          +D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 248 TAYHEEMQHNIDQATYDLRETLEQLEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTP 307

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  ++GF+  +   +          +Y   I+RS N +L I+ND+LD SK+E+GK+ L  
Sbjct: 308 LNGVLGFTRQMLKTQLRTT----QRDYMQTIERSANNLLSIINDVLDFSKLEAGKLMLEA 363

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P  L   + E + L+   A+EK + +     +++P  ++ D   ++QI +N++ NAI F
Sbjct: 364 IPFPLRATLDETLVLLAPSAHEKGLELTVVCDSSVPDNVIGDALRLQQILINLIGNAIKF 423

Query: 719 TPSGGQIIISTTHT----SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           T  G  I +         S  E+ ++V D+G+G++  +  +  + F Q   S   R  GT
Sbjct: 424 TEKG-YIGLRVGQRVITQSRVELEIQVEDSGIGISEQQQTQLFQAFRQADASISRRHGGT 482

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           GLGL + + +V    G+    S P +G+   I 
Sbjct: 483 GLGLVITQKLVREMGGEITFSSQPDQGSTFMIR 515


>gi|297580266|ref|ZP_06942193.1| sensor protein tors [Vibrio cholerae RC385]
 gi|297535912|gb|EFH74746.1| sensor protein tors [Vibrio cholerae RC385]
          Length = 1020

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 71/238 (29%), Positives = 114/238 (47%), Gaps = 8/238 (3%)

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
           ++ AE+ S  KS FLA +SHEIRTP+  ++G + ++++             Y   I+RSG
Sbjct: 496 RQQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLQDTTLTST----QQHYVQVINRSG 551

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
             +L I+ND+LD SKIE+G + +      L   V E   L+Q  A EK I +      ++
Sbjct: 552 RSLLAILNDVLDYSKIEAGHLEIDQAHFDLYRLVRETHELMQSRAREKGITLTYHIDEDV 611

Query: 695 PRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRVRDTGVGMTNYE 752
            +    D   + Q+  N++ N I FT  G  +I I         +   V D+G+G+   E
Sbjct: 612 TQYWQGDEIRIGQVLNNLVGNGIKFTEQGEVRIRIRLALDGQG-IRFAVEDSGIGIAEEE 670

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
                  F Q    +  +  GTGLGL +++ +V A  G+  + S   +G+      PL
Sbjct: 671 QATLFDAFTQADAGR-RKLGGTGLGLAISRKLVKAMGGELQLASQLGQGSCFWFTLPL 727


>gi|126659307|ref|ZP_01730443.1| Histidine Kinase [Cyanothece sp. CCY0110]
 gi|126619389|gb|EAZ90122.1| Histidine Kinase [Cyanothece sp. CCY0110]
          Length = 835

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 88/429 (20%), Positives = 169/429 (39%), Gaps = 45/429 (10%)

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
                    +     +    ++++      +  +LE     + +   +G I+  NR   +
Sbjct: 134 LGLLDSWQILREVLAEQSNPQQELASAKNLIKQLLEELPLPVMLQTHQGDIIQQNRTWRE 193

Query: 484 LFG--YPVEDILRKPFTVFLEQNTPSVMN-----HYLTEILSLDLRQTLEKITLGST--- 533
             G   P ++    P          +          L + L+L      ++     T   
Sbjct: 194 QIGELIPPDNATACPLPHETMNQPKTQKISVESNDGLKQNLALITDMAYDQWLNPQTDSW 253

Query: 534 ---------------------------KEEKLLSLRIIIKKLPFSSCY---SLTMHDISE 563
                                       ++  +   I                   D+++
Sbjct: 254 GVPISSLANDSLEPLVDNHLDMGSSSIPDQNKVWQFIKCSLTTDKLPIPISIFVATDVTQ 313

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            +Q   +L+       + +  K +FLA +SHE+++PLTA++G S +++  + G L NPR 
Sbjct: 314 QQQLCQELAAKNADLVQLNRLKDEFLACISHELKSPLTAVVGLSSLLQEDKIGQL-NPRQ 372

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
           I YA  I RSG  ++ +VNDLLD++++E+G++ L F PV++ E    A   +      K 
Sbjct: 373 IHYAQLIYRSGRQLMTLVNDLLDLTRLETGQLKLSFSPVNIKEICERAYHSITEKYKSKS 432

Query: 684 ---ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
              +         + ++LAD   + Q+  ++L NAI FT + G+  +      +  +   
Sbjct: 433 DQPLDFSLEIEPGLKQLLADELRLHQMLTHLLDNAIKFTQTEGKFGLKVNRWED-WLAFT 491

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           + DTG+G+         + F Q+ N    + EGTGLGL L + +  A+ G     S   +
Sbjct: 492 IWDTGIGIPEESQHLIFQKFQQLENPLTRQFEGTGLGLVLTQRLARAHGGDISFVSKAGQ 551

Query: 801 GTLIEIIFP 809
           G+   ++ P
Sbjct: 552 GSQFTLLLP 560


>gi|115442698|ref|XP_001218156.1| hypothetical protein ATEG_09534 [Aspergillus terreus NIH2624]
 gi|114188025|gb|EAU29725.1| hypothetical protein ATEG_09534 [Aspergillus terreus NIH2624]
          Length = 1101

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 76/255 (29%), Positives = 129/255 (50%), Gaps = 12/255 (4%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           +S  +    + + A++ AE  +  KS+FLA +SHEIRTP+  IIG +++  +        
Sbjct: 646 VSNLRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDD---LK 702

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
           P   E  N +    N +L I++D+LDISKIE+ +M +   P ++   V  A+  + + AN
Sbjct: 703 PYTREMLNVVHNLANSLLTIIDDILDISKIEANRMVIESIPFTVRGTVFNALKTLAVKAN 762

Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV-- 737
           EK + +     N +P  ++ D   ++QI LN++ NAI FT  G ++ ++   +  E+   
Sbjct: 763 EKFLSLTYQVDNTVPDYVIGDPFRLRQIILNLVGNAIKFTEHG-EVKLTIRKSDREQCAA 821

Query: 738 -----ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
                   V DTG+G+   +L+     F Q   S   R  GTGLGL ++K +V+   G  
Sbjct: 822 NEYAFEFSVSDTGIGIEEDKLDLIFDTFQQADGSTTRRFGGTGLGLSISKRLVNLMGGDV 881

Query: 793 YIFSTPAKGTLIEII 807
           ++ S    G+     
Sbjct: 882 WVTSEYGHGSTFHFT 896


>gi|304394570|ref|ZP_07376489.1| sensor for ctr capsule biosynthesis, histidine kinase acting on
           RcsB [Ahrensia sp. R2A130]
 gi|303293231|gb|EFL87612.1| sensor for ctr capsule biosynthesis, histidine kinase acting on
           RcsB [Ahrensia sp. R2A130]
          Length = 636

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 88/604 (14%), Positives = 205/604 (33%), Gaps = 45/604 (7%)

Query: 236 MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHT-INLNQYTKKQYFGTLQN 294
           ++  +++++   A++  ++ T+   L ++    +           + + T+         
Sbjct: 46  IEATLTNMSVPAANQHAIITTDLARLASNRTDRIDFDTGSGEFARITRDTRPNGMVVETI 105

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTK 353
                 +  +   +          +      ++  P  F V+   G L   N  +L ++ 
Sbjct: 106 EMPSKEKPQATDGYAGAHGTSGISQRKLMAALENMPDGFAVFDSSGVLMAFNQRYLDMSP 165

Query: 354 YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
           + +                  +   +    V L   D       A    +    + +  +
Sbjct: 166 HIASHIKVGVQ------HEDIIRAVHRSGAVQLDHIDEEEFVEFATRQRLS-PGDPTHDL 218

Query: 414 T--FIPFEKANQFPENMPQNGIEPEDVDTRINK-------RKMEIEVMQLCSILEATSDG 464
                    A +   +        +  +++  +         +     Q+   LEA   G
Sbjct: 219 LKDGRWIRFAARLMSDNSTIFTLSDITESKAQEERVIASDAALLRRTRQMEQSLEAMPTG 278

Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT------PSVMNHYLTEILS 518
           + + N E  +++ N A  ++ G+P   +        L +NT                  +
Sbjct: 279 VIMFNGEQRMVTCNTAYREMLGFPASLLKPGVARETLIENTKTLGLFDEKRMEESHNAYN 338

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578
             L +T          + +++ +              +   DI+   + +  L+   +  
Sbjct: 339 SSLNRTDHHSFRYYMADGRVIQVHFTP---MSDGGSIVLFFDITAELEVQASLASYSRRL 395

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
           E+ ++   +F    SH+++ PL  I  F + +   + G         Y + I+ +   + 
Sbjct: 396 ERSNAELQNFAYVASHDLQEPLRKIEAFGDRLL-TKHGEHLPEGGQHYLDRINDAAGRMR 454

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
            ++NDLL  S++ S +  L  E + L   V+  +S +Q+   E    +  +    +P I 
Sbjct: 455 QLINDLLAFSRVSSKERKL--EEIDLSAIVAGVVSDLQVRIEETGASVDVT---ALPTIE 509

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV----------ILRVRDTGVGM 748
            D   ++Q+  N++SNA+ FT      ++S T ++   V           L   D G+G 
Sbjct: 510 GDPTQMRQLMQNLISNALKFTREDVTPVVSITASTQGGVDETGMPVRTCTLVFSDNGIGF 569

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            N   E+    F ++    +    GTG+GL   + + + + G         +G    +  
Sbjct: 570 ENRFAEQIFTIFQRLHG--RSEYAGTGIGLTTCRKIAERHHGTISAQGEIGEGATFTVTM 627

Query: 809 PLYD 812
           PL  
Sbjct: 628 PLKQ 631


>gi|254446215|ref|ZP_05059691.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198260523|gb|EDY84831.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 542

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 99/396 (25%), Positives = 169/396 (42%), Gaps = 33/396 (8%)

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE---ATSDGIAIINREG---I 473
                  +     ++  DVD     R +E E +QL  ++E   +    + ++  +G   +
Sbjct: 15  VERASSRSCRVLVLQESDVDREFISRILEAEGLQLRFVVELSSSIEQAVGLLESKGFDVV 74

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
           +L          G      L     +    N P ++               LE   +   
Sbjct: 75  LLD--------LGLSGSIDLGVLLKLQEAANCPLLIL------------SGLEDEVIARE 114

Query: 534 KEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
             +  +   +    L  +       H I E  +   +LS AK+ AE  S  KSDFLA +S
Sbjct: 115 AMQHGVQEFLSKNGLSSTILERTISHSI-ERYRLMAELSKAKQKAEAASQAKSDFLAVMS 173

Query: 594 HEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESG 653
           HE RTP+  I+G   ++ N   GP    +  E  + + +     L ++ D+LDISKIE+G
Sbjct: 174 HEFRTPMNGILGGINLLGNVCNGP----QETELLSMMKQCAESQLTLIGDVLDISKIEAG 229

Query: 654 KMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNIL 712
            M L +E  S  + +S  +S V   A EK + +       +P  +++D R ++Q+ +N++
Sbjct: 230 GMELAYEGFSPRDLISSVLSAVSFSAREKGVKLAVDIDRGLPRELVSDARRLRQVLMNLV 289

Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
            NA+ FT  G ++ I         V  RV DTG+G++   ++     F Q+ +S   R +
Sbjct: 290 GNAVKFTSEG-EVRIHARKFDGCLVEFRVTDTGIGISPKYIDSIFDTFTQVDSSYSRRYQ 348

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           GTGLGL + K +V    G   + S   +G+      
Sbjct: 349 GTGLGLAICKRLVKMLGGTIRVESKVGRGSDFRFTI 384


>gi|144899413|emb|CAM76277.1| Signal transduction histidine kinase [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 840

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 109/789 (13%), Positives = 229/789 (29%), Gaps = 71/789 (8%)

Query: 47  DSFEQSNFTDQNQESVSN---TNYLDSENTFVFDPIPRTVRFTWNI-----DAHGY---- 94
           ++F Q    D +   V        +D+     F    R     W       D  G     
Sbjct: 89  NTFVQRALLDADYPGVDGLAVAVPIDARQQQAFVTDIRQR--LWRNFAIYPDNTGRSGAV 146

Query: 95  LKEISE--ELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPI 152
           +  IS      K IG       G                          T          
Sbjct: 147 ITHISPLSRAAKAIGFDISSHPGR-WQ------------AAQLARDTGKTTLSTPLSLIT 193

Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212
            G      + +   PIY  +        + I  V +  +             + +  I  
Sbjct: 194 SGGENRSFLLIH--PIYRPD--------YPIATVTQRRDALFGWLLLGLHAQTLVGNIAN 243

Query: 213 GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ 272
                  +        +    +   ++   L         VL              LP  
Sbjct: 244 TVKDPLLDISVYSGSITESNRIYGADRPRRLEAGMFETRRVLDFAGSRWTLLAHRHLPRS 303

Query: 273 EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD----K 328
             +               +L   +  +   +S      L+       + T  T+      
Sbjct: 304 ALWFGAAPLILLGICIALSLAVTAATTLLLVSREQSRQLALQAMGQLSRTERTLAGVTAS 363

Query: 329 CPIPFF-----VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
            P   F         G   + +P  + +              L      P   +     P
Sbjct: 364 APGTVFQWQRRADGSGGFTFVSPQAIPMFGIAPESLTADWRHL------PFAPEELQAWP 417

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
             +  +  +             +               +     +   GI  +  + +  
Sbjct: 418 QAMAAAADSQDEWQMEGRYRAVDGGLRWWKCTASSSPGDDGSVALN--GIFVDITEQKDA 475

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
           +R++         + E TS    +I+ E G ++  N A    +GY  +D   K +   + 
Sbjct: 476 QRQLAERERTYREMFERTSAVKVLIDPENGEVIDANAAACSYYGYGADDT--KRWASQVS 533

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
                 +   L    +   +Q         + + + + + +   ++         +HD++
Sbjct: 534 LMAEDALRDVLAR-SAGGEQQFFRSRHRLLSGDVREVEVHMGPVRMNGRQYVHAIVHDVT 592

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           + +  + +L       E  ++    F    SH+++ PL  I  F + +  +R+    +  
Sbjct: 593 DREHYQAELVEKSAKLETSNAELEQFSYVASHDLQEPLRTIASFLQ-LLERRYDDRLDDD 651

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             ++  +   + + +  ++ DLL+ S++  G     F    +D   S A   +     E 
Sbjct: 652 GRQFIGFAVDAASRLQAMIQDLLEYSRV--GTRGRPFAATDMDRVCSVAQGNLTRATQES 709

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG--GQIIISTTHTSNEEVILR 740
              I    A  +P+++AD   +  +  N++ N + +       QI I       E  +  
Sbjct: 710 GASI---IAEPLPKVMADEVQMVSLLQNLMGNGLKYRRENVAPQIRI-WAEEEAERWVFS 765

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V D G+G+     ++    F ++    + +  GTG+GL L + +V  + G  ++ S P +
Sbjct: 766 VADNGIGIEPQYFDRIFLVFQRLH--TREKFGGTGIGLALCRKIVQRHGGDIWLDSVPGQ 823

Query: 801 GTLIEIIFP 809
           GT      P
Sbjct: 824 GTTFHFSLP 832


>gi|156744216|ref|YP_001434345.1| integral membrane sensor signal transduction histidine kinase
           [Roseiflexus castenholzii DSM 13941]
 gi|156235544|gb|ABU60327.1| integral membrane sensor signal transduction histidine kinase
           [Roseiflexus castenholzii DSM 13941]
          Length = 579

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 79/267 (29%), Positives = 137/267 (51%), Gaps = 7/267 (2%)

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            M D+ + KQ +     A+  AE  S  KS FLA +SHE+RTPL AI+G+ +++  +   
Sbjct: 281 LMEDLVQRKQAEEAAHRAQAAAEAASHAKSMFLATMSHELRTPLNAILGYVQLLHLEAQI 340

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
              +    +    I  +G  +L I++++LD SKIE G+MN+  +  ++     E IS+++
Sbjct: 341 HGRSEMLPD-LERIRSAGKHLLTIISNILDFSKIEQGRMNVEIDTFNVSVIAHEMISIIE 399

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT---S 733
             A  +   +  +   +I  + +D   V+QI  N+LSNA+ FT +G  + ++        
Sbjct: 400 PLARNRNNTLTLTCPPDIGMMQSDAGKVRQILFNLLSNAVKFTDNG-TVALTIERECCSD 458

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS-QQIRGEGTGLGLPLAKAMVDANMGKF 792
            + V   V DTG+GM+  +L +  +PF Q+  S       GTGLGL L++ +     G  
Sbjct: 459 GDWVRFSVADTGIGMSPEQLTRLFQPFTQVHQSHSSHAHRGTGLGLALSQQLCRLLGGDI 518

Query: 793 YIFSTPAKGTLIEIIFP-LYDTSHPHD 818
            + S   +G++  +  P +  T+H  D
Sbjct: 519 SVTSEVGRGSVFTVRLPAVISTAHTAD 545


>gi|315646641|ref|ZP_07899758.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus vortex V453]
 gi|315277967|gb|EFU41288.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus vortex V453]
          Length = 484

 Score =  275 bits (703), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 72/254 (28%), Positives = 128/254 (50%), Gaps = 9/254 (3%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E  +  + L++  +   + +  K DF++ +SHE+RTPLT+I G+SE +     G      
Sbjct: 223 ELGELSSTLNYMAQEIVRSNQVKDDFISSISHELRTPLTSIKGWSETL---DSGGYDPEE 279

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                  I +  + ++ +V +LLD SK++  +M L    V+L E + E +  +   A +K
Sbjct: 280 TKIGMQIITKETDRLIGLVEELLDFSKLQQNEMKLVKGIVNLRELLQEIMLNLWTKAEKK 339

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
            I I+   ++  P I  D   +KQ+ LNI+ NA+ F+   G I +S T      VI+ V+
Sbjct: 340 GIQIKL-VSDEKPIIYGDANRLKQVFLNIVDNAVKFSHENGAINLSFTIEEK-FVIVTVK 397

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G+G+++  L +    F Q+         GTGLGL + + +++ + G   + S   +GT
Sbjct: 398 DHGIGISDEHLRRVKDRFFQVNPLN----GGTGLGLAITQQLIELHGGAMEMESELGQGT 453

Query: 803 LIEIIFPLYDTSHP 816
            + +  PL +   P
Sbjct: 454 SVIVKLPLPEGKIP 467


>gi|301058203|ref|ZP_07199253.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta
           proteobacterium NaphS2]
 gi|300447705|gb|EFK11420.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta
           proteobacterium NaphS2]
          Length = 912

 Score =  275 bits (703), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 70/305 (22%), Positives = 145/305 (47%), Gaps = 7/305 (2%)

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571
           Y  ++L+  +        + S  +E+ L +  I+  L  +    +      E +     L
Sbjct: 612 YTEKLLAGAIGSASAHAMVTSVVQEEPLGVHDIMSILDETQQIIIYSR---ELESTTKDL 668

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
           + A +  ++    K++F++ VSHE+RTPLT++   +E++ +     L   RY ++   I 
Sbjct: 669 AAANERLKELDQLKNEFISTVSHELRTPLTSVRALAEILHSNPD--LDADRYQKFTGIII 726

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
                +  +++D+L+  KI+SGK    F    + E + +++       ++  I +     
Sbjct: 727 TESERLSRLIDDVLNFQKIKSGKTQWEFTETDMGEIIEDSVVSTGQLVHDNHIDLTLLLP 786

Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTP-SGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
                   D   + Q+ +N+LSNA+ F     G+I I  +   N  + + V+D G+G++ 
Sbjct: 787 EEKVYASVDRDRLIQVMINLLSNAVKFCDTDQGRIEIGLSREQN-LIRVTVKDNGIGISA 845

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            + E   + F QI +S + +  GTG+GL +++ +++A+ GK ++ S P +G       P+
Sbjct: 846 ADQEFIFEEFRQIKDSSKRKPFGTGVGLTISRHIIEAHKGKIWVESEPGRGAKFVFTIPV 905

Query: 811 YDTSH 815
              S+
Sbjct: 906 VQDSN 910


>gi|144898726|emb|CAM75590.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal
           [Magnetospirillum gryphiswaldense MSR-1]
          Length = 710

 Score =  275 bits (703), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 76/276 (27%), Positives = 150/276 (54%), Gaps = 6/276 (2%)

Query: 541 LRIIIKKLPFSSCYSLTMHDISE----WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
           +R+   +    +       ++ +     +++++ L  AK  A++ +  KS+FL+ +SHE+
Sbjct: 287 VRLQQAQDELENRVVERTRELHDALISLERQQHDLEQAKLGADRANQAKSEFLSSMSHEL 346

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTPL A+IGF+++++ +R GPL N +     ++I R G  +L+++N++LD+++IE+GK++
Sbjct: 347 RTPLNAVIGFTQLLRTERPGPL-NEKQAGQLDHILRGGQHLLELINEVLDLARIETGKLS 405

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716
           L  E +     ++E ++  + YA E+ + I       +  I  D    KQI LN++SNAI
Sbjct: 406 LSVEVIDPVVVMNECLAFGRAYARERGVEIGEWQGGPVLPISVDYTRFKQILLNLISNAI 465

Query: 717 HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
            +  + G++ ++        +   + DTG G+   +     +PF ++  ++    EGTG+
Sbjct: 466 KYNRADGRVTLTAQPWGTGMMRFSIADTGPGIARDKQAHLFEPFNRL-GAESRDVEGTGI 524

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
           GL + K +V A  G     S   +G++  I FP+  
Sbjct: 525 GLTITKRLVQAMNGLIGFHSQEGQGSVFWIDFPIAR 560


>gi|83594369|ref|YP_428121.1| PAS/PAC sensor hybrid histidine kinase [Rhodospirillum rubrum ATCC
           11170]
 gi|83577283|gb|ABC23834.1| PAS/PAC sensor hybrid histidine kinase [Rhodospirillum rubrum ATCC
           11170]
          Length = 1067

 Score =  275 bits (703), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 118/763 (15%), Positives = 222/763 (29%), Gaps = 98/763 (12%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTW--YGKTTLWPI 152
           +   ++    TIG    + +G    +    L       +G +      +           
Sbjct: 75  VALYNDAYAPTIGGKHPRALGRPARENWGELWDTLGPMLGQVRLTARAFGADNYPFQINR 134

Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212
            G    V  D++  P+   + E +G   F  V               L +    L     
Sbjct: 135 HGFLEQVYFDISYDPVPGADGEVAGV--FCTVTETTARVFAERRLAALRELSIALSTTLA 192

Query: 213 GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ 272
                      +           +   VS            +            ++    
Sbjct: 193 RSDGPLSLGEALPKAALAAIAGHLAQDVSR---------AAIYRHGSHGKPVLVATTDPA 243

Query: 273 EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP 332
                    Q T            +                   +     P T ++ P+ 
Sbjct: 244 PRTR----PQATGTTEGSPFAEILERVRREGRPVLWEGGGDGGPQRLLGVPLTAEQGPMG 299

Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
             V S   L  A+  +  +           AG +S+ L    + +    +   L R    
Sbjct: 300 VLVVSVCPLVAADAEYRKVIDLA-------AGQISSALTTAAILERERERADDLTR---- 348

Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
               +A    +    +  +A                 Q     + ++  + +R    E  
Sbjct: 349 ---VAADNARLYREAQREIA----------DRQAIEAQFLHLTDTLEKMVEERT--GERD 393

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
           +L  +   + + +A+   +  I + N A   L G+    ++  P ++ +  +        
Sbjct: 394 RLWRV---SGELMAVGTADSHIKAVNPAWETLLGHDERLLVGAPMSLLVHPDDREPSTAA 450

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLS 572
           L  +        L         +     +   I      + + +   D++E KQ ++ L+
Sbjct: 451 LRAMEPQGPP--LRFENRLRDSDGTYHWIAWTIVA--HGALFYMVGRDVTEEKQARDALA 506

Query: 573 HAKKIAEKESSHK----------------SDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            A +    +++ +                      V+H+    LT I+G  E +     G
Sbjct: 507 EAHRQLIAQTAERERAEEALRQAQKMEVIGQLTGGVAHDFNNLLTIILGNLETLIRHIDG 566

Query: 617 --PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
             P    R                 +   LL  S+    +  L   P+ L+      I L
Sbjct: 567 ASPPDPARVRTLVERATLGAERAAALTQRLLAFSR----RQPLDPRPLDLNRLTLGLIDL 622

Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-- 732
           +     EK I + T  +     +LAD   ++ + LN+  NA    P+GG++I+ TT    
Sbjct: 623 LHRTIGEK-IALDTRLSMVPVGVLADANQLESVVLNLALNARDAMPTGGRLILETTADLV 681

Query: 733 -------------------SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
                                    LRV DTG GM    L +   PF    +     G+G
Sbjct: 682 IEAPTAEKRPAKGNPAGAPPGTYAALRVTDTGKGMEAGVLARVFDPFFTTKD----VGQG 737

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           TGLGL  A   +  + G   I S P +GT + I+ P  + + P
Sbjct: 738 TGLGLSQAYGFIKQSGGHIGIESEPGQGTTVTILLPRLEGALP 780



 Score = 52.7 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/314 (7%), Positives = 72/314 (22%), Gaps = 24/314 (7%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK-RQNTWYGKTTL 149
           A  ++K ++      +G+    ++G  +  +      +P+      ++ +      +  L
Sbjct: 408 ADSHIKAVNPAWETLLGHDERLLVGAPMSLLVHPDDREPSTAALRAMEPQGPPLRFENRL 467

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
              +GT  ++   + A           G   + +      +   R       ++      
Sbjct: 468 RDSDGTYHWIAWTIVAH----------GALFYMVGRDVTEEKQARDALAEAHRQLIAQTA 517

Query: 210 IKKGHSSVEKEK------YDIFSQQSPPPHLRMK------NKVSSLTEYYAHKDDVLKTE 257
            ++      ++         +    +   +  +         +    +  +  D      
Sbjct: 518 ERERAEEALRQAQKMEVIGQLTGGVAHDFNNLLTIILGNLETLIRHIDGASPPDPARVRT 577

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
                T                  +         L   +    + L       ++     
Sbjct: 578 LVERATLGAERAAALTQRLLAFSRRQPLDPRPLDLNRLTLGLIDLLHRTIGEKIALDTRL 637

Query: 318 GENLTPETVDKCPI-PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
                    D   +    +    N   A P+   L    + D +  A            +
Sbjct: 638 SMVPVGVLADANQLESVVLNLALNARDAMPTGGRLILETTADLVIEAPTAEKRPAKGNPA 697

Query: 377 DNNAIKPVMLYRSD 390
                    L  +D
Sbjct: 698 GAPPGTYAALRVTD 711


>gi|323701175|ref|ZP_08112850.1| integral membrane sensor signal transduction histidine kinase
           [Desulfotomaculum nigrificans DSM 574]
 gi|323533777|gb|EGB23641.1| integral membrane sensor signal transduction histidine kinase
           [Desulfotomaculum nigrificans DSM 574]
          Length = 459

 Score =  275 bits (703), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 65/248 (26%), Positives = 122/248 (49%), Gaps = 4/248 (1%)

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           +   +L       E+    + + ++ VSHE+RTPLT I GF+E + +         ++  
Sbjct: 216 RMSAQLKEKIDDIERLDRLRQELVSDVSHELRTPLTVIQGFAEALHDGIVKSKEQEKF-- 273

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           Y + I      + D+VND+L +  +E G M    E V L++ V+  +  ++  A+ K+ +
Sbjct: 274 YLHNIMDEAGRLKDLVNDILKLRSMEVGHME-EMEFVVLNKLVNITVERMKQIASAKKTI 332

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           ++T        +  ++  +KQ+  N++ NAI  + +GG + +           + V+D G
Sbjct: 333 VKTITPPEAITVFGNIDRLKQVLTNLVDNAISHSYAGGMVAVELGLRE-GFAFIAVKDNG 391

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
            G+   ELE   + F ++  S+  RG G+GLGL + + +V+ + GK  + S   KG    
Sbjct: 392 PGIPQEELENIWERFYKVDKSRSRRGTGSGLGLSIVRKIVEVHGGKVTVESELGKGATFT 451

Query: 806 IIFPLYDT 813
           +  PL +T
Sbjct: 452 VFLPLSET 459


>gi|295087981|emb|CBK69504.1| Signal transduction histidine kinase [Bacteroides xylanisolvens
           XB1A]
          Length = 503

 Score =  275 bits (703), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 86/361 (23%), Positives = 157/361 (43%), Gaps = 18/361 (4%)

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
            Q   +L   + G+A I  + I+   N ++             +   +     T    N 
Sbjct: 6   RQNELVLNNINSGLAYIANDYIVQWENISLCSKSLSYEAYKKGELCYLTAHNRTTPCENC 65

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCYSLTMHDISEWKQEKN 569
            +         +++    L +   + ++ +       +        + + D++E +    
Sbjct: 66  VMQRARRSGQVESI----LFNLDNKHVIEVFATPIFNEQGDVDGVVIRVDDVTERQHMIG 121

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  A+  AE+    KS FLA +SHEIRTPL AI+GFS+++              E+   
Sbjct: 122 ELETARSRAEQSDKLKSAFLANMSHEIRTPLNAIVGFSDLLM----VTEDQEEKEEFIQI 177

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I+ +  L+L ++ND+LD+SKIE+G + L +E   L    +E  + +       ++ +   
Sbjct: 178 INANNELLLKLINDILDLSKIEAGSVELKYEDFDLAVYFNELAASMHRRVVNPQVRLVPV 237

Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS-NEEVILRVRDTGVGM 748
                  +  D   + QI  N ++NAI +T  G    I   +   + ++ L VRDTG+G+
Sbjct: 238 NPYETCTVRLDKNRLAQILTNFVTNAIKYTSKG---TIEMGYEKIDGDIRLYVRDTGIGI 294

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
              + +K    F ++        +GTGLGL + KA+V+A  G+    S   KG+L   + 
Sbjct: 295 PEDKKDKVFHRFEKLD----EFAQGTGLGLSICKAIVEACRGEIGFESEFDKGSLFWAVL 350

Query: 809 P 809
           P
Sbjct: 351 P 351


>gi|33466074|gb|AAQ19476.1| histidine kinase J7 [Emericella nidulans]
          Length = 1297

 Score =  275 bits (703), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 76/255 (29%), Positives = 129/255 (50%), Gaps = 12/255 (4%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           +S  +    + + A++ AE  +  KS+FLA +SHEIRTP+  IIG +++  +        
Sbjct: 700 VSNLRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDD---LK 756

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
           P   E  N +    N +L I++D+LDISKIE+ +M +   P ++   V  A+  + + AN
Sbjct: 757 PYTREMLNVVHNLANSLLTIIDDILDISKIEANRMVIESIPFTVRGTVFNALKTLAVKAN 816

Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV-- 737
           EK + +     N +P  ++ D   ++QI LN++ NAI FT  G ++ ++   +  E+   
Sbjct: 817 EKFLSLTYQVDNTVPDYVIGDPFRLRQIILNLVGNAIKFTEHG-EVKLTICKSDREQCAA 875

Query: 738 -----ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
                   V DTG+G+   +L+     F Q   S   R  GTGLGL ++K +V+   G  
Sbjct: 876 NEYAFEFSVSDTGIGIEEDKLDLIFDTFQQADGSTTRRFGGTGLGLSISKRLVNLMGGDV 935

Query: 793 YIFSTPAKGTLIEII 807
           ++ S    G+     
Sbjct: 936 WVTSEYGHGSTFHFT 950


>gi|288573468|ref|ZP_06391825.1| Hpt sensor hybrid histidine kinase [Dethiosulfovibrio peptidovorans
           DSM 11002]
 gi|288569209|gb|EFC90766.1| Hpt sensor hybrid histidine kinase [Dethiosulfovibrio peptidovorans
           DSM 11002]
          Length = 694

 Score =  275 bits (703), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 68/248 (27%), Positives = 122/248 (49%), Gaps = 9/248 (3%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E + + ++L  ++    + +  K  FLA VSHEIRTPL AI+G + +++ +         
Sbjct: 184 ELRGKVSRLQESEAQLAEANQAKDRFLANVSHEIRTPLNAILGTAAIVRGK-----SPAE 238

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                  I   G+ +L ++ND+LD+SK+ +G ++L   P  L E +       +  A  K
Sbjct: 239 MDRALEVIKDEGHALLALINDILDLSKMGAGFLDLDEAPFDLFELLEALEGSYRSEAKRK 298

Query: 683 RILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVI-- 738
            +      + +IP  I  D   ++Q+  N+L NA+ FT SG   + + +  +  +++   
Sbjct: 299 GLDFSLDLSKDIPRWITGDPIRLRQVLSNLLGNAVKFTSSGRVSLTVKSLRSDGDKLTLS 358

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
             V DTG+G+    + +  KPF Q   S   +  GTGLGL +++ +V A  G   + S  
Sbjct: 359 FSVFDTGIGIPREVVPRLFKPFSQADGSTSRKYGGTGLGLAISRRIVRAMGGDISVESER 418

Query: 799 AKGTLIEI 806
            +G+   +
Sbjct: 419 GRGSTFSL 426


>gi|156743538|ref|YP_001433667.1| histidine kinase [Roseiflexus castenholzii DSM 13941]
 gi|156234866|gb|ABU59649.1| histidine kinase [Roseiflexus castenholzii DSM 13941]
          Length = 548

 Score =  275 bits (703), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 88/373 (23%), Positives = 159/373 (42%), Gaps = 33/373 (8%)

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
              +++R     S       LF      I         +     + N  +   +      
Sbjct: 24  AYLVVDRSFRTRSI-GGYLHLFADQQPHIG----DSLFDAFPELIGNEAILNAILAGNVS 78

Query: 524 TLEKITLGSTKEEKLLSLRI-----IIKKLPFSSCYSLTMHDISEWK------------- 565
            L    +        +          I           T+ DI++               
Sbjct: 79  RLHLPHVNRDGAHGEVRYLDLLTLPHINAHGQIDGLVQTITDITDQSVIQQAHIQQRNEL 138

Query: 566 --------QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
                   ++  +L+       + +  K +FLA +SHE+RTPL+AI+G +E+++ +  GP
Sbjct: 139 SLLKDRLSRQNVELARTNAELRRANRLKDEFLAGISHEVRTPLSAILGLAELLRAKIVGP 198

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
           L N   +E  + I+ SG  +L ++NDLLD++KIE+G+  L    V+  +    ++ +V+ 
Sbjct: 199 L-NDEQVEMLSRIEASGRHLLAVINDLLDLAKIEAGRFELEPRLVAAHQVCRSSLLMVKE 257

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE- 736
            A  K   +  +    +  + AD R ++Q  +N+LSNA+ FTP GG + +       +E 
Sbjct: 258 LALRKHQRVHINLDPKVEVLHADERRLRQALINLLSNAVKFTPPGGDVGLDLEGDPEQEI 317

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           V + V DTG+G+   ++ +  +PF QI N  Q    G+GLGL +   + + + G   + S
Sbjct: 318 VRITVWDTGIGIAAEDIPRLFQPFSQIQNKYQHDQAGSGLGLVMVARLAELHGGGVSLVS 377

Query: 797 TPAKGTLIEIIFP 809
            P KG+   +  P
Sbjct: 378 EPGKGSRFTMTLP 390


>gi|331269772|ref|YP_004396264.1| sensory transduction histidine kinase [Clostridium botulinum
           BKT015925]
 gi|329126322|gb|AEB76267.1| sensory transduction histidine kinase [Clostridium botulinum
           BKT015925]
          Length = 652

 Score =  275 bits (703), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 94/496 (18%), Positives = 177/496 (35%), Gaps = 25/496 (5%)

Query: 321 LTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYK-SVDDIEIAGGLSTLLDAPKLSDN 378
                ++       VY   G  ++ N + + L        D+       +  D      +
Sbjct: 142 HLKNVLNNISEGIIVYDEFGKFYFCNKASMCLVGDDIKKFDVRGFFNKLSYYDFESKGKD 201

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
                     ++R       +L     +  N+     +           +       +  
Sbjct: 202 LQQLYHDFKYNNRPIREFIIKL----KDNNNNNRYIELNSSSILNEKCVINTVITLKDIT 257

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPF 497
             +    K++ +   +  ++      IA++   +      N     L          +  
Sbjct: 258 SIKSKGIKLQEQREFINDVVNTIDVPIAVVEYDDLNYKLANSKYKDLLFLNNNINDDR-- 315

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII-----KKLPFSS 552
               E     V+++   + +          +       E+   ++         K+   +
Sbjct: 316 --VTEPFILDVIHNIFNKDIHKREHVLAPYVIKDKNGNERYYKIKFTGKVSEKSKINKLN 373

Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
              +   DI+E            K  +  S  K +F   +SHE+RTPLT I    + +  
Sbjct: 374 KIFIHATDITEE-------IIHNKELQNISKMKDEFFNMISHELRTPLTIINSSVQ-LAR 425

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
             +              +D++   +L ++N++LDISK E+G + L +    +       +
Sbjct: 426 DIYKEEITRNIGRVLLRVDQNCRRLLKLINNILDISKAEAGFLQLQYSDFDIVVITENIV 485

Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
           S V +YA  + I +          +  D    ++I LN+LSNAI FTP G +I ++TT  
Sbjct: 486 SSVSIYAKSRGIQLIFDTNEEEKLVALDKDKYEKIILNLLSNAIKFTPKGRKIYVTTTVE 545

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
            N +V ++V+D G+G+    L+     F QI NS     +GTGLGL L K +V+   G  
Sbjct: 546 -NNKVKIKVKDQGIGIEEENLKTIFDRFIQIRNSTTNCVQGTGLGLALVKNLVELMGGSI 604

Query: 793 YIFSTPAKGTLIEIIF 808
            + S   +GT   I F
Sbjct: 605 KVSSKLNEGTEFIITF 620



 Score = 43.9 bits (102), Expect = 0.10,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 46/142 (32%), Gaps = 10/142 (7%)

Query: 445 RKMEIEVM----QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           + +          L ++L   S+GI + +  G     N+A   L G  ++    + F   
Sbjct: 130 QTLRNRENDCFIHLKNVLNNISEGIIVYDEFGKFYFCNKASMCLVGDDIKKFDVRGFFNK 189

Query: 501 LEQNTPSVMNHYLTEILSL---DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY--- 554
           L           L ++      + R   E I            + +    +    C    
Sbjct: 190 LSYYDFESKGKDLQQLYHDFKYNNRPIREFIIKLKDNNNNNRYIELNSSSILNEKCVINT 249

Query: 555 SLTMHDISEWKQEKNKLSHAKK 576
            +T+ DI+  K +  KL   ++
Sbjct: 250 VITLKDITSIKSKGIKLQEQRE 271


>gi|156974495|ref|YP_001445401.1| Signal transduction histidine kinase [Vibrio harveyi ATCC BAA-1116]
 gi|156526089|gb|ABU71175.1| hypothetical protein VIBHAR_02212 [Vibrio harveyi ATCC BAA-1116]
          Length = 1054

 Score =  275 bits (703), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 82/247 (33%), Positives = 129/247 (52%), Gaps = 8/247 (3%)

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           Q K     AK  A K S  KS FLA +SHEIRTPL  +IG SEV+ +            +
Sbjct: 377 QAKEDAEQAKDDAIKASKAKSSFLANMSHEIRTPLNGVIGISEVLSDTSLTAT----QKD 432

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           Y + I+ S  L+L ++ND+LD SKIESG + +      + E++ +  S+V   A EK I 
Sbjct: 433 YVDTIETSSQLLLSLINDILDFSKIESGMLLISPHSTCVRESIYDIASIVSPKAKEKGIN 492

Query: 686 IRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVI--LRV 741
           ++ S + N P R++ D   ++Q+ +N +SNA+ FT  G   + ++T   S    +    V
Sbjct: 493 LKVSISRNTPYRLMIDDHRLRQVIMNFMSNAVKFTEKGSVHLSVTTHGVSGANAVMEFSV 552

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
           +D+G+G+   + +   +PF Q  NS   +  GTGLGL ++  +V+   GK  + S    G
Sbjct: 553 QDSGIGIDEQQQKNIFEPFAQEDNSTTRQFGGTGLGLAISTQLVELMGGKIQLESEKEHG 612

Query: 802 TLIEIIF 808
           +      
Sbjct: 613 SRFFFQI 619


>gi|148254243|ref|YP_001238828.1| PAS/PAC sensor signal transduction histidine kinase [Bradyrhizobium
           sp. BTAi1]
 gi|146406416|gb|ABQ34922.1| PAS/PAC sensor signal transduction histidine kinase [Bradyrhizobium
           sp. BTAi1]
          Length = 503

 Score =  275 bits (703), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 88/522 (16%), Positives = 186/522 (35%), Gaps = 36/522 (6%)

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYSHGNLF---YANPSFLLLTKYKSVDDIEIAGGLST 368
                   +      D   + F  +         Y + +   L    + D +  A  L  
Sbjct: 2   RGVTQPFPDAAARPEDANALGFGAWDLDLATGDFYWSATTRKLFGVGADDQVTFAVFL-A 60

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
           LL     +   A       +     ++                 +  +     +   +  
Sbjct: 61  LLAPEDRAAVEAAIEHSRQQGTGFDLSFKVP--------GGDHWIRVLAGVVPDAADKPR 112

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
              GI  +    +  +  + +      SIL+   D + +I+  GII   + A  ++FGY 
Sbjct: 113 HLRGIALDIDQEKRLEETLRLREQHFRSILDTVPDAMIVIDGSGIIQFFSTAAERMFGYT 172

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT--LEKITLGSTKEEKLLSLRIIIK 546
            ++      +  + +   S    YLT   S   R    + +I  G  ++     + + I 
Sbjct: 173 EKEAAGLDVSELMPEPDRSRHAGYLTRYHSTRERHIIGIGRIVTGRRRDGTTFPMHLSIG 232

Query: 547 KLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESS--HKSDFLARVSHEIRTPLTA 602
           ++       ++   HD++E +Q + +L   +      S      +  + ++HE+  PL A
Sbjct: 233 EMQSGGKPYFTGFAHDLTEHQQTQARLRELQSELVHVSRLSAMGEMASALAHELNQPLAA 292

Query: 603 IIGF---SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI-SKIESGKMNLH 658
           I  +   S  +      P    +     +           I+  L D  S+ ES      
Sbjct: 293 ISNYMKGSRRLLAGSSDP-NTGKIESAMDRAAEQAIRAGQIIRRLRDFVSRGES-----E 346

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718
               SL + + EA +L    A E+ + +R     +   +LAD   ++Q+ +N+  NA+  
Sbjct: 347 KRVESLSKLIEEAGALGLAGAREQNVQLRFQLNPDADLVLADRVQIQQVLVNLFRNALEA 406

Query: 719 TPSGGQIIISTTHTS--NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
             +  +  ++ T+    ++ + + V DTG G  +  +    K F    ++      G G+
Sbjct: 407 MSNAPRRELAATNRRISDDLIEVAVSDTGTGFHDDVMPNLFKTFFTTKDT------GMGV 460

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
           GL +++++++A+ G+ +  +  A G       P   T   HD
Sbjct: 461 GLSISRSIIEAHGGRMWAENNEAGGATFRFTLPAAPTRVEHD 502



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/228 (10%), Positives = 60/228 (26%), Gaps = 11/228 (4%)

Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291
             +   ++V+          +     +  +  S +        F  +    +  +   G 
Sbjct: 45  FGVGADDQVTFAVFLALLAPEDRAAVEAAIEHSRQQGTGFDLSF-KVPGGDHWIRVLAGV 103

Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDE----GENLTPETVDKCPIPFFVYSH-GNLFYANP 346
           + + + +                 +E     E      +D  P    V    G + + + 
Sbjct: 104 VPDAADKPRHLRGIALDIDQEKRLEETLRLREQHFRSILDTVPDAMIVIDGSGIIQFFST 163

Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
           +   +  Y   +       +S L+  P  S +           +R  I    R+ T +  
Sbjct: 164 AAERMFGYTEKEAAG--LDVSELMPEPDRSRHAGYLTRYHSTRERHIIGI-GRIVTGRRR 220

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
              +  M         Q        G   +  + +  + ++     +L
Sbjct: 221 DGTTFPMHLS--IGEMQSGGKPYFTGFAHDLTEHQQTQARLRELQSEL 266



 Score = 37.3 bits (85), Expect = 10.0,   Method: Composition-based stats.
 Identities = 28/244 (11%), Positives = 63/244 (25%), Gaps = 4/244 (1%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G ++  S    +  G    +  G+ + ++      D + H G L +  +T      
Sbjct: 152 IDGSGIIQFFSTAAERMFGYTEKEAAGLDVSELMPE--PDRSRHAGYLTRYHSTRERHII 209

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF-GIVHVNRVDNDPRALGKRLDKKFSHL 207
                 T          + +     +  G   F G  H        +A  + L  +  H+
Sbjct: 210 GIGRIVTGRRRDGTTFPMHLSIGEMQSGGKPYFTGFAHDLTEHQQTQARLRELQSELVHV 269

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
             +      +        +Q        MK     L          +++           
Sbjct: 270 SRL-SAMGEMASALAHELNQPLAAISNYMKGSRRLLAGSSDPNTGKIESAMDRAAEQAIR 328

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
           +               ++K+     +   +     L+     ++   F    +      D
Sbjct: 329 AGQIIRRLRDFVSRGESEKRVESLSKLIEEAGALGLAGAREQNVQLRFQLNPDADLVLAD 388

Query: 328 KCPI 331
           +  I
Sbjct: 389 RVQI 392


>gi|114320265|ref|YP_741948.1| PAS/PAC sensor signal transduction histidine kinase
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226659|gb|ABI56458.1| PAS/PAC sensor signal transduction histidine kinase
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 443

 Score =  275 bits (703), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 64/358 (17%), Positives = 136/358 (37%), Gaps = 29/358 (8%)

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
            +      A  D + +++ +  I   N A ++L G        +                
Sbjct: 98  ARYRDSARAMPDALVVLSGDYRIDWWNPAAARLLGLRWPGDSHQRIANIYRHPDFVAFLS 157

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKL 571
                     R  + +     +  +  + L I +     +  Y L   D++   + +   
Sbjct: 158 ---------SRSPVTREVSLPSPLDSQVWLEIRLVPY-GTDRYLLLARDVTHLHRLET-- 205

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
                        + DF+  VSHE+RTPLT I G +E +  +      +P   +    + 
Sbjct: 206 ------------MRRDFVGNVSHELRTPLTVIYGVAETLNEEM---ADDPEVGDMLRLLQ 250

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
                +  +V+DLL +S++E+G    H E V +   + E +   +  +  +      +  
Sbjct: 251 EQSERMRRLVDDLLLLSRLETGATPSHPEWVDMPRLLEELVEDGKALSGSRHHRFELTCE 310

Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751
             +  +      ++    N++ NA+ +TP  G I +   +       L V D G+G+   
Sbjct: 311 PGLL-LEGCESELRSAFSNLIFNAVKYTPGDGYIGVRW-YADKAGAHLSVTDNGIGIPAA 368

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            + +  + F ++ +++     GTGLGL + K +++ +  +  + S P +G+     FP
Sbjct: 369 HIPRLTERFYRVDSARSKASGGTGLGLAIVKHVLNRHRAQLTVRSQPGQGSTFICTFP 426


>gi|303256491|ref|ZP_07342505.1| phosphate regulon sensor kinase PhoR [Burkholderiales bacterium
           1_1_47]
 gi|330999062|ref|ZP_08322786.1| phosphate regulon sensor kinase PhoR [Parasutterella
           excrementihominis YIT 11859]
 gi|302859982|gb|EFL83059.1| phosphate regulon sensor kinase PhoR [Burkholderiales bacterium
           1_1_47]
 gi|329575649|gb|EGG57180.1| phosphate regulon sensor kinase PhoR [Parasutterella
           excrementihominis YIT 11859]
          Length = 365

 Score =  275 bits (703), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 81/376 (21%), Positives = 156/376 (41%), Gaps = 40/376 (10%)

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
             +   T+  ++++     +    L A  DG+ ++ ++ +I   NR   +      E  +
Sbjct: 1   MTDKNHTKFEEKEL-----RFRQTLSALPDGVVLLRKDLVIQWMNRIAERDLSLDPEKDV 55

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553
            K  T                E +     +  +   L    + ++L +R+I         
Sbjct: 56  GKKLTDVFTNP----------EFIQHIQSERWKARQLIDLPDGRVLEVRVISA---GKKY 102

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
             +   DI+E K+  +               + DF+  VSHE+RTPLT I GF E+    
Sbjct: 103 TVVVTRDITESKRIDDF--------------RRDFVGNVSHELRTPLTVIQGFLELATEN 148

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
              P  N     +   +      +  +V+DLL +S++E        E + +DE + EA +
Sbjct: 149 ---PNLNEEDRLHWEMMLEQAERMRALVDDLLALSRLEQDAAPASRELIDVDEILEEAAA 205

Query: 674 LVQLYANE-KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
             ++ +     I I    +     IL D + ++    N+++NA+ +TP  G+I +S    
Sbjct: 206 EGRMISGGAHEIKIAKVASEG---ILGDFKDMRSAVTNLVTNAVRYTPKDGKIELSWEVK 262

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
            +  + L V+D G+G+    + +  + F ++  S+     GTGLGL + K ++  +  + 
Sbjct: 263 DDHGI-LSVKDNGIGIAPEHIPRVTERFYRVDKSRSRETGGTGLGLAIVKHVLFRHQAQL 321

Query: 793 YIFSTPAKGTLIEIIF 808
            I S   KG+  +II 
Sbjct: 322 QIESELGKGSTFKIII 337


>gi|70731797|ref|YP_261539.1| sensor protein GacS [Pseudomonas fluorescens Pf-5]
 gi|10178628|gb|AAG13658.1|AF246292_1 sensor kinase GacS [Pseudomonas fluorescens]
 gi|68346096|gb|AAY93702.1| sensor protein GacS [Pseudomonas fluorescens Pf-5]
          Length = 917

 Score =  275 bits (703), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 78/243 (32%), Positives = 143/243 (58%), Gaps = 8/243 (3%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  A+K A + S  KS+FLA +SHEIRTPL  I+GF+ +++     P    R ++Y   
Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSELTP----RQLDYLGT 325

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I++S + +L I+N++LD SKIE+GK+ L   P +L + + + ++++   A+ K++ + + 
Sbjct: 326 IEKSADSLLGIINEILDFSKIEAGKLVLDSIPFNLRDLLQDTLTILAPAAHAKQLELVSL 385

Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQI---IISTTHTSNEEVILRVRDTG 745
              + P  ++ D   +KQI  N++SNAI FT  G  +   ++   H  + ++ + ++DTG
Sbjct: 386 VYRDTPLSLVGDPLRLKQILTNLVSNAIKFTREGTIVARAMLEEEHEDSVQLRISIQDTG 445

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G++N ++    + F Q  NS   +  GTGLGL ++K +++   G+  + STP +G+   
Sbjct: 446 IGLSNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFW 505

Query: 806 IIF 808
           I  
Sbjct: 506 ISL 508


>gi|312889061|ref|ZP_07748621.1| multi-sensor signal transduction histidine kinase [Mucilaginibacter
           paludis DSM 18603]
 gi|311298579|gb|EFQ75688.1| multi-sensor signal transduction histidine kinase [Mucilaginibacter
           paludis DSM 18603]
          Length = 581

 Score =  275 bits (703), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 81/378 (21%), Positives = 168/378 (44%), Gaps = 36/378 (9%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
           + K++ E +++ +I++  +D I   +   +IL  N    KL G   +DI+          
Sbjct: 226 QAKIKQEKLRIETIVKNVTDAIIGFDENELILFINPVAVKLLGVEEKDIIGSS------T 279

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----------- 552
              +  N     +   D  + L  + L    E    +  +    +P              
Sbjct: 280 EEVASQNDLFRTL--TDKTEDLNDLKLYLDGELSYFTKELFEIGVPNEGSTEEHKSSLKR 337

Query: 553 -CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
             Y + + +I+                 K    K++F+A +SHE++TP++++    ++++
Sbjct: 338 KGYFILLKNITR--------------FYKLDEAKTNFIATISHELKTPISSLKMSLKLME 383

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
           ++R+G +      E  N I+   N +L I ++LLD+ ++E+GK+ L+F        ++  
Sbjct: 384 DKRYGTVTKS-QKELINNINDDSNRLLKITSELLDMGQVETGKLLLNFGSTDPKNIINYT 442

Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
              ++  A +K I +    + N+P + AD      + +N L+NAI ++P    I ++   
Sbjct: 443 CEAIRFIAEQKEITLHVKCSKNVPEVWADPDKTAWVLINFLTNAIKYSPQSSIIDVTVKK 502

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
           +S   +   V+D G G+    L +  + + ++P S+     GTGLGL +AK  ++A  G+
Sbjct: 503 SSLGRIEFSVKDYGKGIEEIYLPRIFERYFKVPGSE-FSVPGTGLGLAIAKDFIEAQGGE 561

Query: 792 FYIFSTPAKGTLIEIIFP 809
             + S   +G+    + P
Sbjct: 562 IGVESKIGEGSKFFFLLP 579


>gi|239909171|ref|YP_002955913.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239799038|dbj|BAH78027.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 840

 Score =  275 bits (703), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 116/635 (18%), Positives = 222/635 (34%), Gaps = 27/635 (4%)

Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD 252
                    +  + L + K    S +   +    ++           +       A   D
Sbjct: 49  ANQTALAFQEINTKLSDAKMQLES-DWTTWPADEEKIHDILRANFRGLLQGQALLAFDAD 107

Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
                      +    + ++E F                L+N    ++     R   + S
Sbjct: 108 GKMRGHSREWPTPRVLVADREYFTAQKAGDGDFLFISEPLRNRVNNAWMISLSRRIDTPS 167

Query: 313 AYFDEGENLTPETVDKCPI--PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
             F        +      I     +     +       L L  Y +   ++  G    + 
Sbjct: 168 GVFAGVLMAAIDVQYFLDIYTALKLPHDATIVLRRGDGLPLAAYPAPGRLDGQGVSCPIP 227

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
                   +     M         +  A    + W      A         +       +
Sbjct: 228 GESISRARDVPGFAMSVCLSLPLDSLLAGWRRVAWLLGLGTAAAVAAILALSAALAARLR 287

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLC-------SILEATSDGIAIINREGIILSTNRAVSK 483
              E         +  +      L        +ILEA+  GI +  R+G  LS N + + 
Sbjct: 288 REWEAARRQQAELEDLVTARTADLQGLLELNTAILEASPLGIGVYRRDGQCLSVNASFAH 347

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           + G   E + R+ F          ++   L  + +     +  ++        K + L  
Sbjct: 348 IVGGDREAVQRQNFNQLESWRVSGLLPEILETLDNGRTFHSEAQVVSTF---GKPIWLEW 404

Query: 544 IIKKL--PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
            + +      +   L ++D +  KQ +++L  AK  AE  S  KS FLA +SHE+RTPL 
Sbjct: 405 RLVRFVRGGQNHALLLINDATVRKQAEDELRQAKHQAEAASRAKSAFLANMSHELRTPLG 464

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
            + G  E++         +    EY     +S   + D+++D+LD+S+IE+GK++L   P
Sbjct: 465 GVAGMLELLLTTAL----DGEQHEYVTAALKSTRRLSDLLSDILDLSRIEAGKLDLRLAP 520

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTP 720
                  +  + +  L A EK +++  +    +P RI +D   + QI  N++ NA+ FT 
Sbjct: 521 FETANLRAAILEVFALAAREKGLILEFTLHPGLPARIESDEARLLQILFNLVGNAVKFTG 580

Query: 721 SGGQIII---STTHTSNEE--VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
            G  + +   S     +    ++  V D+GVG+ +  L +  +PF Q  + +Q    G G
Sbjct: 581 LGF-VRVDLWSLPARPDGRTPLVFSVADSGVGIPDGRLGEIFEPFAQGDHPRQQSRFGVG 639

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           LGL +   ++    G+  + + P  GT +    P+
Sbjct: 640 LGLSIVSRLIALLGGELAVDNAPG-GTTVYGCLPV 673


>gi|256839617|ref|ZP_05545126.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256738547|gb|EEU51872.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 771

 Score =  275 bits (703), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 100/487 (20%), Positives = 188/487 (38%), Gaps = 38/487 (7%)

Query: 339 GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI---A 395
             +  A    + + K     D     G +                      +   I    
Sbjct: 296 DEVEGAVNRVVSILKGTPPSDFPQIEGSNKAYVF-DYGVLERWGIDSSKLPEGAIIANMP 354

Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
              +     W     L +  +      +            E +  +  + K++ E   L 
Sbjct: 355 FVVQYKYYIWAAGFILVVMLLLLFSYQRKRY-------IQEALHKKDAQEKLKREKTFLS 407

Query: 456 SILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
             L++ +  I      +G+    NR      G P   +  + F   +             
Sbjct: 408 FALDSGN--IFAFRYSKGVFEFDNR-FYHYLGMPCVPMKIEEFQDAIHPEELDNFLRDRN 464

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSL-----------RIIIKKLPFSSCYSLTMHDISE 563
            + S  L + + +      K+                  +   +    S   L   +I  
Sbjct: 465 LLDSGFLSRKVTQRRCNFNKKGYEWWEFRYAQNKNEKDSVSGDEAVEVSGLCL---NIQR 521

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            K  +N L  A++ AE+    K  FLA +SHEIRTPL AI+GFS+++ +    PL     
Sbjct: 522 IKDTENSLIAARQKAEESDRMKLVFLANMSHEIRTPLNAIVGFSQLLNSDM--PLEPEEK 579

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            E+ + I ++ +L+L ++ND+LD+S+IESG M+  +E + L + + +     QL   E  
Sbjct: 580 AEFIDLITKNSDLLLKLINDILDLSRIESGSMSFSYENLDLSKLMGDIFHTHQLMMPE-G 638

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-VILRVR 742
           + ++    +    I +D   + Q+  N ++NA+ FT  G  I I    +++ + +++ V+
Sbjct: 639 VELKIRVPHEPLIIRSDHFRLTQVCTNFINNAVKFTAKG-YIEIGYELSADGKSILISVK 697

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG G+ + + EK  + F ++        +GTGLGL + +++V    G   + S    G+
Sbjct: 698 DTGKGIPDDKKEKVFERFQKLD----EFAQGTGLGLAICQSIVHTFHGSISLESEVGVGS 753

Query: 803 LIEIIFP 809
              I  P
Sbjct: 754 KFTISLP 760


>gi|153870040|ref|ZP_01999522.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
 gi|152073493|gb|EDN70477.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
          Length = 1048

 Score =  275 bits (703), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 76/344 (22%), Positives = 148/344 (43%), Gaps = 42/344 (12%)

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
           E++  +   +  +          L +I      +T          ++K + L        
Sbjct: 542 EELQSQSEELQSQSEELQTQQEELRQINEELEERTRALERQKQDVQQKNVLLEQTQ---- 597

Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                       +E ++ K  + +  +  E  S +KS+FLA +SHE+RTPL +I+  +++
Sbjct: 598 ------------TEMERTKKAIENKAQELELASKYKSEFLANMSHELRTPLNSILILAQM 645

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           ++  +   L   + +EYA  I  +G+ +L ++N++LD+SK+E+GK+++H E + L + V 
Sbjct: 646 LEENKAANLT-EQQVEYAQTIFNAGSDLLLLINEILDLSKVEAGKIDVHLENIVLADMVM 704

Query: 670 EAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
                    A  K +L   +   ++P+ +  D   ++QI  N+LSNA  FT  G ++ ++
Sbjct: 705 MVKQKFNHVAETKGVLFLVTIEEDLPKAMKTDGHRLQQIINNLLSNAFKFTNEG-EVKLT 763

Query: 729 TTH-----------------------TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
                                       ++ + + V DTGVG+   +     + F Q   
Sbjct: 764 IQRPTERIPLLLTGISLFKEGKQEFLEPDKSIAISVSDTGVGIPKDKQLMIFEAFQQADG 823

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +      GTGLGL +++ +     G   + S   KG+      P
Sbjct: 824 TTSRSYGGTGLGLSISRQLARLLCGDIQLQSEEGKGSTFTFYVP 867


>gi|237654499|ref|YP_002890813.1| Hpt sensor hybrid histidine kinase [Thauera sp. MZ1T]
 gi|237625746|gb|ACR02436.1| Hpt sensor hybrid histidine kinase [Thauera sp. MZ1T]
          Length = 921

 Score =  275 bits (703), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 78/280 (27%), Positives = 135/280 (48%), Gaps = 14/280 (5%)

Query: 545 IKKLPFSSCYSLTMHDISEWKQEK--NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTA 602
           + ++        +  D  E +      +L  AK+ AE  S  KSDFLA +SHEIRTP+  
Sbjct: 231 LGQIAERDARLASHRDHLEDEVATRTEELLRAKEAAEAASQAKSDFLATMSHEIRTPMNG 290

Query: 603 IIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           ++G +E++ +       N     +A  ++ SG  +L I+ND+LD SKIESG + L     
Sbjct: 291 VLGMTELLLDSGL----NHEQRHFAEAVENSGRHLLGIINDILDFSKIESGHLELEAVEF 346

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPS 721
            L + + + +++    A +KR+ +       + R +  D   ++QI  N+ +NAI FT  
Sbjct: 347 ELGDLLEDTLAMFAQPAEKKRLELIADLPPEVRRCVRGDPFRLRQIVGNLANNAIKFTER 406

Query: 722 GGQIIISTTH----TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
           G ++++        T    + + V DTG+G+  +  +K  + F Q+  S   +  GTGLG
Sbjct: 407 G-EVVVRARLLGEGTDGYRLRISVEDTGIGIPPHAQQKIFEQFSQLDGSTTRQFGGTGLG 465

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEI--IFPLYDTSH 815
           L + + +V    G+  + S P  G    I    P   ++ 
Sbjct: 466 LAICRRLVGLMGGEIGVDSRPGAGACFHIDLCLPAGQSTA 505


>gi|254467028|ref|ZP_05080439.1| response regulator, sensor histidine kinase component GacS
           [Rhodobacterales bacterium Y4I]
 gi|206687936|gb|EDZ48418.1| response regulator, sensor histidine kinase component GacS
           [Rhodobacterales bacterium Y4I]
          Length = 793

 Score =  275 bits (703), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 80/257 (31%), Positives = 128/257 (49%), Gaps = 10/257 (3%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E K+   +L   K  AE  +  KS FLA +SHEIRTP+  ++G +EV+   R  P     
Sbjct: 249 EKKRIAERLQQEKARAEAATETKSRFLATMSHEIRTPINGVLGMAEVLNETRLTP----E 304

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                + I  S   +L IVND+LD SK+E+GK  +  +P +L + + +  +L+   A  K
Sbjct: 305 QTSCTSTILASSEALLRIVNDILDFSKLEAGKAQMLQQPFNLRDVIYDVATLMSPSATAK 364

Query: 683 RILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV--IL 739
            + I         P  + D   V+QI +N++ NA+ FT  G  I I+  + +   +   +
Sbjct: 365 GVEICIDIPEHTPPEFIGDSGRVRQILMNLVGNAVKFTLEG-HISITLNYDARHNIPLCI 423

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            VRDTGVG+    + +    F Q+ ++   R EGTGLGL ++  +  A  G+  + S   
Sbjct: 424 DVRDTGVGIPEDSIGQIFHAFEQVESTTARRFEGTGLGLAISSRLTQAMGGRIDVVSQAG 483

Query: 800 KGTLIEI--IFPLYDTS 814
           KG+   +    P+   S
Sbjct: 484 KGSCFTVCLTLPVAAPS 500


>gi|307635092|gb|ADI85566.2| sensor histidine kinase, PAS, PAS, PAC, incomplete PAS and PAC
           domain-containing [Geobacter sulfurreducens KN400]
          Length = 749

 Score =  275 bits (703), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 98/795 (12%), Positives = 226/795 (28%), Gaps = 78/795 (9%)

Query: 42  ENPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEE 101
           E P  D  +    T   +   +    ++ E  F                        +  
Sbjct: 4   ETPSRDVADLPPLTAVVESMPAPALLIEDERVF-----------------------CNRA 40

Query: 102 LPKTIGNYAFKM--IGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYV 159
                G    ++  +      +    H    +              +  +   +G+   V
Sbjct: 41  TEDLTGYRRDELSSLDAWFRSLFGSEHERARSRFDADRATGFPVVRREIITRKDGSRRLV 100

Query: 160 PIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEK 219
            +               G +   I+H      D R   +   +++  +         V  
Sbjct: 101 EV----------AGSICG-KLMCILHDITDLMDVRLQLQEHAERYRIIKSTSMDGFWVID 149

Query: 220 EKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP---LLTSEESSLPEQEDFH 276
               +         +   ++   LT      D     E+         E+ S   +    
Sbjct: 150 LHGSVVEVNDACCRILGYSREELLTMSLHDIDATESAEETQKHIRNIVEQGSERFEVRHR 209

Query: 277 TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY 336
             +      +        +                     + E      ++      + +
Sbjct: 210 RKDGTVIDVEVSTTFQPASRCFHAFIRDISERKQTEEALRKSEERFRLAMEATTDGIWDW 269

Query: 337 S-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIA 395
           +   +  Y +P++  +  Y+  D          LL      D        +   +     
Sbjct: 270 NIAADSGYFSPAYYRILGYEPEDFSPSFQVWMELLHP---EDRERALSTNMDCVEGRTQG 326

Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
                     +      +        ++  + +   G   +  + +  +  +      L 
Sbjct: 327 FQTEFRMKAKDGSWRWILGRGSAVNRDRRGKALRLIGTHQDITERKTAEEALRNREWLLR 386

Query: 456 SILEATSDGIAIINREGIILSTN--RAVS--KLFGYPVEDILRKPFT-VFLEQNTPSVMN 510
              EA   G      +  I+  N   +    ++FG          F    +       M 
Sbjct: 387 ---EAQRIGCLGT-YDYDIVHDNWECSAELDRIFGIHTATPKNLEFWLDLIHPEFREKMK 442

Query: 511 HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQ 566
            Y   +L+      +E   +    + +   +    +    +         T+ DI+E KQ
Sbjct: 443 DYFASLLTERTWFNMEYKII-RPSDGQERWVYGTGEFTRDNEGRPVRMIGTIQDITERKQ 501

Query: 567 EKNKLSHAKKIAEK-----------ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
            +  +    +  ++               +  F   VSH++R PL  I  +S ++     
Sbjct: 502 TEETIGKLNRELDRRVMERTGQLEEAIREQESFSYSVSHDLRAPLRHINSYSNLVIEDYS 561

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
             +       Y   I  +   +  +++DLL++S++  G++ L    V+L +  +   S++
Sbjct: 562 DQIPVE-ARYYLERICTASGKMGQLIDDLLELSRV--GRVELRKGTVNLSKNAASVASML 618

Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS-N 734
           Q     +   +    A ++    AD   ++Q+ LN++ NA+ +T    +  I       +
Sbjct: 619 QETEPYR--AVDWVIAGDL-TAQADRTLIRQVLLNLMGNALKYTAKTSRARIEIGSAVID 675

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
            E +  VRD G G     + K  +PF ++         GTG+GL   + ++  + G+ + 
Sbjct: 676 GETVFFVRDNGAGFDMAYVNKLFRPFQRLHGG---EFPGTGIGLATVQRIIQRHGGRVWA 732

Query: 795 FSTPAKGTLIEIIFP 809
                 G       P
Sbjct: 733 EGKVNGGATFYFSLP 747


>gi|298385607|ref|ZP_06995165.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
 gi|298261748|gb|EFI04614.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
          Length = 909

 Score =  275 bits (703), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 111/660 (16%), Positives = 232/660 (35%), Gaps = 31/660 (4%)

Query: 162 DLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEK 221
           +   +P+ S+  E  G     + +      +         K      E     S V    
Sbjct: 125 EAKVVPLRSKEGEIIGH--ILLSNDVTAIKEAEFRTDESKKNLEMAMEAASMSSWVYDVY 182

Query: 222 YDIFSQQSPPPHLRMKNKVSS-LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINL 280
              F+     P  +    +   L   +    + L      L   E         F+    
Sbjct: 183 KKTFNPLHGDPVAKNNTTLDQILNILHPQDHEPLIQLLSQLTNKEIQQGNITLRFYNEEE 242

Query: 281 NQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY-FDEGENLTPETVDKCPIPFFVYSHG 339
            QY   +    L        + +  +   +       + + L  +      +   ++   
Sbjct: 243 KQYRYYESMMRLSFEHFGKLQIIGTQLDITERMQMVKKTQELIAKRELAMKVSNIIHWDF 302

Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399
           ++      F       +    +    +   +D     D ++    +        +  +  
Sbjct: 303 DVR--TQEFEAYNDPINDYASDKLVTIQRYMDVIHPEDRSSSYDAIQSMLSGKELTINFT 360

Query: 400 LHTIQWNRENSLAMTFIPFE-KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458
                   E+      I    + +++  N+   G             ++E    ++    
Sbjct: 361 CRMQTKYDESWQYCNIIGVPFEKDEYGNNVRYTGFRQNISKLHQLNEELEERNYKMQLTF 420

Query: 459 EATSDGIAIIN---REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           +    G++  +   +     + N  V+    +    I  + +           + +++  
Sbjct: 421 KTV--GMSYWDFEVKSKQFKAFNDPVNDF--HSENAITPEDYLHVTHPEDIEQVRNHINY 476

Query: 516 ILSLDLRQTLEKITLGSTK-EEKLLSLRIIIKKLPFSS-----CYSLTMHDISEWKQEKN 569
           ++     + L       TK +++  +L +    +          Y+    + ++W++   
Sbjct: 477 MI-GGTTKDLNFKFRSKTKWDKEWQTLIVTGIPVERDKKGNVIRYTGIKVNNTKWEKMAQ 535

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L   K  AE     KS FLA +SHEIRTPL AI+GFSE++              EY + 
Sbjct: 536 QLKELKDKAELSDRLKSAFLANMSHEIRTPLNAIVGFSELM----VYSEDPAEKEEYMSI 591

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I  +  L+L ++ND+LD+SKIESG ++   E  +L +  +E  +++Q       +  +  
Sbjct: 592 IQSNNELLLRLINDILDLSKIESGILDCKRETFNLAKVCNELYTMIQPKITNPDVEFQMD 651

Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749
            ++    I  D   +KQ+ +N L+NA+  T SG  I +  +      + + V D+GVG+ 
Sbjct: 652 NSSPDCWIFLDRSRLKQVWMNYLTNAVKCTKSG-YIKMGYSIEREG-IRIYVEDSGVGIP 709

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
               E+    F ++        +GTGLGL +++A+++   G+    STP  G+      P
Sbjct: 710 EELQERVFGRFQKL----NEFAQGTGLGLAISRAIIEGAGGEVGFTSTPGIGSTFWAWIP 765



 Score = 41.2 bits (95), Expect = 0.72,   Method: Composition-based stats.
 Identities = 22/152 (14%), Positives = 45/152 (29%), Gaps = 22/152 (14%)

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
            SI       I I +  GI+ S N    +++G   +          +       M+  L 
Sbjct: 33  ESIYACLPMSIEIYDTNGILRSINEHALQMYGVTDK----TTVVNIVNLFNSPYMDETLK 88

Query: 515 EILSLDLRQTLEKI-----------TLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDI 561
             +       LE                  K   +   +++  +        + L  +D+
Sbjct: 89  NRIQRGEDIVLEFEYDFDRIKDNAYFSTQNKNTIIYEAKVVPLRSKEGEIIGHILLSNDV 148

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
           +  K+ + +   +KK  E          A +S
Sbjct: 149 TAIKEAEFRTDESKKNLEMAMEA-----ASMS 175


>gi|116251585|ref|YP_767423.1| two component sensor histidine kinase transcriptional regulatory
           protein [Rhizobium leguminosarum bv. viciae 3841]
 gi|115256233|emb|CAK07314.1| putative two component sensor histidine kinase transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 564

 Score =  275 bits (703), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 74/522 (14%), Positives = 175/522 (33%), Gaps = 56/522 (10%)

Query: 322 TPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
               ++  P    +    G +   N   L +        I     +  L           
Sbjct: 59  FESILESLPQGIVLLDPAGTVTAFNSRTLDILGL-PQGAIRKGMNIDGL------PGTAD 111

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
            + V   R+                +      ++       +             +    
Sbjct: 112 CRAVASRRAMTGGAP---TSQFALSDGG---MVSLTCAPSRDG-----GWILSYEDISTL 160

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
              +  +  +  +  + L     G+ + +    ++  N + ++++  P  D+L +P T  
Sbjct: 161 IRVEDSLTEQHRRFDAALSNMPHGLCMFDSTKNLILCNASYARMYNLP--DLLTQPGTPL 218

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSL 556
           ++               +       E    G+   + ++     + K+  +      Y  
Sbjct: 219 VDILAYRSREGNGPADTTTYFDVVFEATVRGAPASQNIVLADGRVIKITHNPMQNGGYVA 278

Query: 557 TMHDIS-------------------------EWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
           T  D++                         E +++  +L          +  +  F+A 
Sbjct: 279 THEDVTKTVRLAEDLRRHHDQLEATVKSRTAEVERQARELERMLAQERNINELQRQFVAM 338

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
            SHE RTPL  I   ++ +  +R G +      +  + I  S   ++D++  +L   +++
Sbjct: 339 ASHEFRTPLAIIDAAAQRLLRKR-GAVEPEFLSDKVDQIRASVTRIVDLMESILSAGRLD 397

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
           +GK++++++  +L   +          A                 I AD R++ Q+  N+
Sbjct: 398 TGKIDINYDACALRSLIKTCCERQSTIAKSH--SFVLDIDGLPESIDADPRTLAQVFTNL 455

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           LSNA+ + P   ++ + T       V + + D GVG+   ++ +  + + +   S  I  
Sbjct: 456 LSNAVKYAPGTSEVRV-TAWAETGNVKVSISDDGVGIDAEDVPRLFQRYFRARTSTGIA- 513

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
            GTG+GL L K +++ + G   + S    G+   +  P+  +
Sbjct: 514 -GTGIGLNLVKQIIELHNGSIEVRSARGCGSTFTVTLPIKRS 554


>gi|332711347|ref|ZP_08431279.1| PAS domain S-box protein [Lyngbya majuscula 3L]
 gi|332349896|gb|EGJ29504.1| PAS domain S-box protein [Lyngbya majuscula 3L]
          Length = 754

 Score =  275 bits (703), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 98/538 (18%), Positives = 190/538 (35%), Gaps = 59/538 (10%)

Query: 312 SAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIE--------- 361
            +     E      ++  P   F V   G       +      + + + I          
Sbjct: 205 ESALKVSEARNRALLEAIPDVIFRVNRDGFYLDWKAAIENPVLFLTNNCIGKHLHNCLPT 264

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH--------------TIQWNR 407
              GL        L  +         R D       AR+               T +   
Sbjct: 265 EVAGLIWEHVEIALESDEIQVIESPIRQDGKLRYFEARIVKSGLDEVAVIVQDITERIEA 324

Query: 408 ENSLAMTFIPFEKANQFPENMPQ---NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
             +LA      E   Q      +     ++ E ++ +  + ++     +  +++E +S+ 
Sbjct: 325 RLTLAQVNDALEVRVQQRTAALRKANQALKGEIIERQKAEEQLRQSEERFRNVVEISSNW 384

Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
           +  ++   +    +  V  L GY   +++ K     + Q     +   L     L    +
Sbjct: 385 MWEMDENAVYTYASPKVWDLLGYEPSEVVGKTPFDLMSQEEAKRVMEILASFTVLKHPFS 444

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEK 580
                    K  +L+ L      +         Y     DI++ K+ + ++ +A    ++
Sbjct: 445 -NLENTRIHKNRQLVVLETSGVPIFDRIGKFCGYRGVDRDITKRKETEVEIINALAKEKQ 503

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
               KS F+   SHE RTPLT I   +E +           +   + + I      +  +
Sbjct: 504 LGELKSRFITMTSHEFRTPLTTIYSSAE-LLEHYGTKWSEYKINNHLHRIQNMVQHMTRL 562

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR---ILIRTSFANNIPRI 697
           +ND+L I K+ESGK+ L   P+ L+   ++ I   Q+  N++    I    S      ++
Sbjct: 563 LNDILLIGKVESGKIELKLTPIDLESFCTDLI--YQIQLNDRNYHTIKFTYSLEKFENKL 620

Query: 698 ------------------LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
                               D + ++QI  N+LSNA+ ++P G  + I  T ++N + I 
Sbjct: 621 GSNHGRNNAASSFSSARPYMDEKLLRQILENLLSNALKYSPKGSTVEIKLTCSAN-QAIF 679

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
           ++ D G+G+   +     + F +  N   I   GTGLGL + K  +D   G+  + S 
Sbjct: 680 KISDQGIGIPEEDQGLLFETFYRGTNVGTIT--GTGLGLAIVKKCLDIYQGQIDLESE 735



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/189 (15%), Positives = 67/189 (35%), Gaps = 4/189 (2%)

Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
           H  +W  +    +  I    A        +   + +  + +  +  +++   +  ++LEA
Sbjct: 162 HEREWTVQEIAFIRGIADHFAIALTHQELEQLYQKQSQELKQKESALKVSEARNRALLEA 221

Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520
             D I  +NR+G  L    A+     +   + + K     L      ++  ++   L  D
Sbjct: 222 IPDVIFRVNRDGFYLDWKAAIENPVLFLTNNCIGKHLHNCLPTEVAGLIWEHVEIALESD 281

Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
             Q +E       ++ KL      I K       ++ + DI+E  + +  L+      E 
Sbjct: 282 EIQVIESPIR---QDGKLRYFEARIVKSGLDE-VAVIVQDITERIEARLTLAQVNDALEV 337

Query: 581 ESSHKSDFL 589
               ++  L
Sbjct: 338 RVQQRTAAL 346



 Score = 65.4 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 20/144 (13%), Positives = 50/144 (34%), Gaps = 10/144 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR----QN 141
            W +D +      S ++   +G    +++G    D+      +    + ++L      ++
Sbjct: 385 MWEMDENAVYTYASPKVWDLLGYEPSEVVGKTPFDLMSQ---EEAKRVMEILASFTVLKH 441

Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
            +         +   L V ++ + +PI+ R  +F G+RG           +         
Sbjct: 442 PFSNLENTRIHKNRQLVV-LETSGVPIFDRIGKFCGYRGVD--RDITKRKETEVEIINAL 498

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIF 225
            K   L E+K    ++   ++   
Sbjct: 499 AKEKQLGELKSRFITMTSHEFRTP 522


>gi|307152857|ref|YP_003888241.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306983085|gb|ADN14966.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 1989

 Score =  275 bits (703), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 71/261 (27%), Positives = 129/261 (49%), Gaps = 16/261 (6%)

Query: 563  EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
            E +Q +  L    +     S +KS+FLA +SHE+RTPL +++  ++++ +     L  P+
Sbjct: 1232 EIEQARRSLEEKAEQLALTSRYKSEFLANMSHELRTPLNSLLILAKLLADNIENNLT-PK 1290

Query: 623  YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             +EYA  I  SG+ +L ++ND+LD++KIESG M++  E + L++   +     +  A++K
Sbjct: 1291 QVEYAATIYSSGSDLLGLINDILDLAKIESGTMSIEVEQMQLEDLRHQIERSFRQIAHDK 1350

Query: 683  RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----- 736
             +     F   +P  I  D + ++Q+  N+LSNA  FT  G Q+ +S             
Sbjct: 1351 GLEFSIIFDPRLPSSIYTDSKRLQQVLKNLLSNAFKFTAKG-QVSLSLEPAIRGWSLDNE 1409

Query: 737  --------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                    +   V DTG+G+   + +   + F Q   +   +  GTGLGL +++ +    
Sbjct: 1410 ILNSAELVLAFAVTDTGIGIAPEKQKLIFEAFQQADGTTSRQYGGTGLGLSISREIARLL 1469

Query: 789  MGKFYIFSTPAKGTLIEIIFP 809
             G+  + S    G+   +  P
Sbjct: 1470 GGEITVISRLGYGSTFTLYLP 1490


>gi|239908519|ref|YP_002955261.1| putative sensor histidine kinase [Desulfovibrio magneticus RS-1]
 gi|239798386|dbj|BAH77375.1| putative sensor histidine kinase [Desulfovibrio magneticus RS-1]
          Length = 1181

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 91/731 (12%), Positives = 237/731 (32%), Gaps = 54/731 (7%)

Query: 91   AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH--IGDLLKRQNTWYGKTT 148
              G    ++  + +  G    + +  ++ D+   +++DP +   +  LL ++ +  G  T
Sbjct: 491  PTGRYLTVNACMARMYGYADPEDMLRQVTDIESQMYVDPADRRRLMALLTQRGSLSGHET 550

Query: 149  LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
                      + + L A  +     +     GF I       N         +     + 
Sbjct: 551  RRRTR-DGRVIWVSLHARAVRDAAGKTVRLEGFCI--DVTSRNQAEQALAEQESTLRIIF 607

Query: 209  EIKK-GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
            +    G  +   +   +         +     ++      A   +    +      +  +
Sbjct: 608  DNSPLGLVAFAPDGAILKCNARFLEIIGTTEDMARGANVLARMPETA-RQALAAALAGSA 666

Query: 268  SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
            +  E      +       +  F  +    +     ++     +L    +    L    V+
Sbjct: 667  TRMEGPYTSVLGGRTRVLRAMFNPVAA-GQAPTPVIASVEDVTLQHEQERSLRLLRAAVE 725

Query: 328  KCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
            + P    +    G + Y NP F  LT Y + + +     +     +  + D    + +  
Sbjct: 726  QSPASIVITDADGAIEYVNPFFTALTGYSAEEALGETPRV----LSSGVHDRAFFQAMWD 781

Query: 387  YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
                             +                 +          ++ +  + +  + +
Sbjct: 782  TLRTGGIWRGELCN---RKRNGELYWEDSSISPIRDDQGVVTHYVAVKEDITEQKAREER 838

Query: 447  MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
            +   + +L +I  A+S GI  +  +G ++  N     LF    + +  +P     E    
Sbjct: 839  LARLMSELEAIFNASSVGIVHLGHDGRVIRANARFGALFALDPDGLAGRPLEDIHENEQR 898

Query: 507  SVM--NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII---IKKLPFSSCYSLTMHDI 561
                    L  + +       E+      ++ + L   +    I      +       DI
Sbjct: 899  RSALRREILAAVAAGQEASVEER---FRNRDGRTLWCAVHGRLIDPAAPQAGSIWIFDDI 955

Query: 562  SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
            +  K+ +N     ++               + H+++ PL +I+   E++     G + N 
Sbjct: 956  TARKELENVREDVER--------------IMRHDLKAPLGSIVNLPELVA--ALGDV-NE 998

Query: 622  RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
               +    I+++G  +L+ ++  LD+ K+E+G      + + L   V+  + ++   A  
Sbjct: 999  EQRDILAEIEQAGRFMLEQIDLSLDLYKMETGTFRPELQRIDLARIVATVVDMLAPLART 1058

Query: 682  KRILIRTSFANNIPRI--LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
            + + +  +F    P +  L +   V+  A N+L NA+    +G  +++     + ++   
Sbjct: 1059 RGVAV--AFPPAQPPVFALGNALLVQTTAGNLLKNALEAEAAGATVVVGF-FAAGDQAGF 1115

Query: 740  RVRD-TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
             + + +        +    + +     +   + +G GLG   A+ M +   G   +  + 
Sbjct: 1116 AIANPSPP--PAEIIPIFFEKY-----ATAGKTKGNGLGTYSARLMTECQGGTIRLDVSE 1168

Query: 799  AKGTLIEIIFP 809
            A GT + +  P
Sbjct: 1169 AAGTTVSVALP 1179



 Score =  152 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 70/616 (11%), Positives = 162/616 (26%), Gaps = 53/616 (8%)

Query: 48  SFEQSNFTDQNQESVSNTNYLDSENTFVFDP-IPRTVRFTWNIDAHGYLKEISEELPKTI 106
             +      +   +++  N     +   +   I  T    +  D +     ++  L +  
Sbjct: 327 KEDLERTVAERTAALTTANEALRASDARYRAFIDATSGMAFFKDENLRYLVVNRNLCEFY 386

Query: 107 GNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAAL 166
           G     +IG     V       P   + +  +        T +     T      ++   
Sbjct: 387 GLPPEAVIGRDDAAV------MPPELLAECRRSDLAAQQGTAMLTALETLGDRVFEVRKF 440

Query: 167 PIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFS 226
           P+     + +G  G+  V+            ++ ++    L++                +
Sbjct: 441 PVPLPGGQ-TGVGGY--VYDVTDRLVAENALRQSEQSLRDLYDNAPIGIFTSLPTGRYLT 497

Query: 227 QQS--------PPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTI 278
             +          P   ++      ++ Y    D        LLT   S    +    T 
Sbjct: 498 VNACMARMYGYADPEDMLRQVTDIESQMYVDPADR--RRLMALLTQRGSLSGHETRRRTR 555

Query: 279 NLNQYTKKQYFGTLQNNSKESFEY----LSHRNHPSLSAYFDEGENLTPETVDKCPIPFF 334
           +        +   +++ + ++       +   +         E E+      D  P+   
Sbjct: 556 DGRVIWVSLHARAVRDAAGKTVRLEGFCIDVTSRNQAEQALAEQESTLRIIFDNSPLGLV 615

Query: 335 VYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393
            ++  G +   N  FL +      +D+     +   +         A       R +   
Sbjct: 616 AFAPDGAILKCNARFLEIIGTT--EDMARGANVLARMPETARQALAAALAGSATRMEGPY 673

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
            +              +  +  +    A       P      +       +R + +    
Sbjct: 674 TSVL---------GGRTRVLRAMFNPVAAGQA-PTPVIASVEDVTLQHEQERSLRL---- 719

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
           L + +E +   I I + +G I   N   + L GY  E+ L +   V             +
Sbjct: 720 LRAAVEQSPASIVITDADGAIEYVNPFFTALTGYSAEEALGETPRVLSSGVHDRAFFQAM 779

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKN 569
            + L                +  +L      I  +         Y     DI+E K  + 
Sbjct: 780 WDTLRTG--GIWRGELCNRKRNGELYWEDSSISPIRDDQGVVTHYVAVKEDITEQKAREE 837

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L+      E   +  S  +  + H+ R     I   +         P G          
Sbjct: 838 RLARLMSELEAIFNASSVGIVHLGHDGR----VIRANARFGALFALDPDGLAGRP--LED 891

Query: 630 IDRSGNLVLDIVNDLL 645
           I  +      +  ++L
Sbjct: 892 IHENEQRRSALRREIL 907



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 25/246 (10%), Positives = 65/246 (26%), Gaps = 11/246 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKT 147
            DA G ++ ++       G  A + +G     +S  +H       + D L+    W G+ 
Sbjct: 734 TDADGAIEYVNPFFTALTGYSAEEALGETPRVLSSGVHDRAFFQAMWDTLRTGGIWRGEL 793

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
                 G       D +  PI       + +    +               RL  +   +
Sbjct: 794 CNRKRNGELY--WEDSSISPIRDDQGVVTHY--VAVKEDITEQKAREERLARLMSELEAI 849

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRM--KNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
                           +    +    L     + ++       H+++  ++     + + 
Sbjct: 850 FNASSVGIVHLGHDGRVIRANARFGALFALDPDGLAGRPLEDIHENEQRRSALRREILAA 909

Query: 266 ESSLPE---QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
            ++  E   +E F   +          G L + +      +   +  +     +      
Sbjct: 910 VAAGQEASVEERFRNRDGRTLWC-AVHGRLIDPAAPQAGSIWIFDDITARKELENVREDV 968

Query: 323 PETVDK 328
              +  
Sbjct: 969 ERIMRH 974



 Score = 61.2 bits (147), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 47/354 (13%), Positives = 98/354 (27%), Gaps = 31/354 (8%)

Query: 233 HLRMKNKVSSLTEYYAHKD----DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288
            LR+ + +  +     H+       +     PLL    + L  +        N    + +
Sbjct: 147 GLRLADSLPRVQMLALHRAIDNNAPVLDGPVPLLQGG-TGLILRLPVRLPGENDAPPRLW 205

Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSF 348
                    + F  L+      L       +  T  T      P   +        NP  
Sbjct: 206 GLATAILDAKEFFQLAASPASGLRLAVRATDPDTGTTRLLAGDPSVFHD-------NPVL 258

Query: 349 LLLTKYKSVDDIEI--AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
             L       ++    AGG + L   P L        V+L  +    ++  ARL      
Sbjct: 259 AQLETPGGPWELAAVPAGGWTRLPVPPPLLAGGFASWVVLSAALFLLLSWPARLAE---- 314

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
                         A    +   +  +             +     +  + ++ATS    
Sbjct: 315 -------AVARATAALDAAKEDLERTVAERTAALTTANEALRASDARYRAFIDATSGMAF 367

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
             +     L  NR + + +G P E ++ +     +     +                   
Sbjct: 368 FKDENLRYLVVNRNLCEFYGLPPEAVIGRDDAAVMPPELLAECRRS-DLAAQQGTAMLTA 426

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSS-CYSLTMHDISEWKQEKNKLSHAKKIAE 579
             TLG    +++  +R     LP         ++D+++    +N L  +++   
Sbjct: 427 LETLG----DRVFEVRKFPVPLPGGQTGVGGYVYDVTDRLVAENALRQSEQSLR 476


>gi|229545684|ref|ZP_04434409.1| sensor histidine kinase [Enterococcus faecalis TX1322]
 gi|257422479|ref|ZP_05599469.1| two component system sensor histidine kinase [Enterococcus faecalis
           X98]
 gi|300860668|ref|ZP_07106755.1| PAS domain S-box protein [Enterococcus faecalis TUSoD Ef11]
 gi|307275836|ref|ZP_07556975.1| PAS domain S-box [Enterococcus faecalis TX2134]
 gi|307291859|ref|ZP_07571730.1| PAS domain S-box [Enterococcus faecalis TX0411]
 gi|229309134|gb|EEN75121.1| sensor histidine kinase [Enterococcus faecalis TX1322]
 gi|257164303|gb|EEU94263.1| two component system sensor histidine kinase [Enterococcus faecalis
           X98]
 gi|300849707|gb|EFK77457.1| PAS domain S-box protein [Enterococcus faecalis TUSoD Ef11]
 gi|306497125|gb|EFM66671.1| PAS domain S-box [Enterococcus faecalis TX0411]
 gi|306507528|gb|EFM76659.1| PAS domain S-box [Enterococcus faecalis TX2134]
 gi|315029564|gb|EFT41496.1| PAS domain S-box [Enterococcus faecalis TX4000]
 gi|315032036|gb|EFT43968.1| PAS domain S-box [Enterococcus faecalis TX0017]
 gi|315156146|gb|EFU00163.1| PAS domain S-box [Enterococcus faecalis TX0043]
          Length = 591

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 71/363 (19%), Positives = 155/363 (42%), Gaps = 30/363 (8%)

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
            Q   +L+    G+ II+ +G +   N  + ++ G        K       +        
Sbjct: 250 EQFHELLDELMIGVFIIDTQGRLRLLNPKMQEMLGLSA-----KNMQSNYLEVIQDADLI 304

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY--SLTMHDISEWKQEKN 569
           +L   +  +     ++IT+        L L +       ++ Y      +D++  +Q + 
Sbjct: 305 HLIHQVVAEKNSLHQEITVTQGPTPLRLDLSLRYLDDQSANDYQVLGIAYDLTRVRQLE- 363

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
                          + DF++ VSHE++TP+T+++GF+E + +            ++ + 
Sbjct: 364 -------------KMQKDFVSNVSHELKTPVTSLLGFTETLIDG--AKEDPEVLNQFLHI 408

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           + +    +  ++ ++L++S+  S  +    + ++L++ ++E +   Q     K++    +
Sbjct: 409 MQKDAQRLQQLIQEILELSR-GSATIPYAEQEITLEKFITEILGSYQQQLAAKQLK---T 464

Query: 690 FANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747
             + +P             I  N++ NAI ++   GQI IS     N+++ L V+DTG+G
Sbjct: 465 VVHGLPESQFFTKYELFYPIVKNLIENAIQYSQENGQITISYAIE-NQQLRLSVQDTGIG 523

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           ++  + E+  + F ++  ++     GTGLGL + +   +   GK  I S    GT   I 
Sbjct: 524 ISQKDQERIFERFYRVDKARSRHSGGTGLGLAIVQNYTELLGGKIAIDSHLGLGTTFTIT 583

Query: 808 FPL 810
            PL
Sbjct: 584 LPL 586


>gi|218515205|ref|ZP_03512045.1| probable two-component sensor histidine kinase/response regulator
           hybrid protein [Rhizobium etli 8C-3]
          Length = 535

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 79/540 (14%), Positives = 175/540 (32%), Gaps = 54/540 (10%)

Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDI 360
             +H                     +  P    ++         N  +  L        +
Sbjct: 6   AEAHAQAERAEQEARAAHARLLAAFEVVPEGLVLFDAEDRFVLWNRRYEQLYAESGDMLV 65

Query: 361 EIAGGLSTLLDAPK--LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
           +       L    +         +         T  A     H  +              
Sbjct: 66  KGMRFEDRLRTGLECGQYPEAVGREEEWLEERLTHHAEPTSKHEQRLPGNRW-------I 118

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILST 477
               +        GI  +  D       ++++      + E     + + +RE    L  
Sbjct: 119 RIEERRISEGGSVGIRVDITD-------LKMQEASFRLLFEGNPMPMWVYDRETLKFLHV 171

Query: 478 NRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEK 537
           N+A    +GY +E  L                +     +   +     ++       +  
Sbjct: 172 NQAAIDHYGYRLEQFLTMTLRDIQAPQD---ADRATAAVFDAEDPAAHDRSFRHLKADGG 228

Query: 538 LLSLRIIIKKLPFSS--CYSLTMHDISEWKQEK-------------------------NK 570
            + + +    L  +      + + D++E K+ +                          +
Sbjct: 229 AIEVTVYSTCLNHNGKAASLMAVVDVTEAKRAEKALLQHRDTLEEMVRSRTVELARQTEE 288

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           L    +  ++ +  +  F++  SHE RTPL  I G ++ +  ++          E A+ I
Sbjct: 289 LERMLEQEKQINELQRQFVSMASHEFRTPLAVIDGAAQRLIRRK-EAATPEFLAEKADQI 347

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
             S + +L+++  +L   +++ G++ +  +P S+ E +    +  +  +  +        
Sbjct: 348 RSSVSRMLELMESILAAGRLDHGRITIVPKPCSIAEIIETCSA--RQESIRRSHRFLLKL 405

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
                 I  D  ++ Q+  N+ SNA+ + P    + +S      E V + VRD G+G+  
Sbjct: 406 DELPETIYGDRPALDQVFSNLFSNAVKYAPDSPNVHVS-GWREGERVCITVRDEGIGIDV 464

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            +L K  + + +  +S  I   GTG+GL L K +V+ + G   + S+   GT   +  P+
Sbjct: 465 DDLPKMFQRYFRARSSTGIA--GTGIGLNLVKQIVELHGGTIDVASSRGNGTTFTLRIPI 522



 Score = 46.2 bits (108), Expect = 0.026,   Method: Composition-based stats.
 Identities = 25/281 (8%), Positives = 65/281 (23%), Gaps = 22/281 (7%)

Query: 71  ENTFVFDPIPRTVRFTWNIDAH-GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP 129
           E +F        +   W  D        +++      G    + + M L D+      D 
Sbjct: 144 EASFRLLFEGNPMP-MWVYDRETLKFLHVNQAAIDHYGYRLEQFLTMTLRDIQAP--QDA 200

Query: 130 NNHIGDLLKRQNTWYGKT--TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187
           +     +   ++             +G  + V +    L    +           +V V 
Sbjct: 201 DRATAAVFDAEDPAAHDRSFRHLKADGGAIEVTVYSTCLNHNGKAASLM-----AVVDVT 255

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQ------SPPPHLRMKNKVS 241
                 +AL +  D     +       +   +E   +  Q+               ++  
Sbjct: 256 EAKRAEKALLQHRDTLEEMVRSRTVELARQTEELERMLEQEKQINELQRQFVSMASHEFR 315

Query: 242 SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE 301
           +           L   K        +   +Q       + +  +        ++ + +  
Sbjct: 316 TPLAVIDGAAQRLIRRKEAATPEFLAEKADQIRSSVSRMLELMESILAAGRLDHGRITIV 375

Query: 302 YLSHRNHP-----SLSAYFDEGENLTPETVDKCPIPFFVYS 337
                        S         +     +D+ P   +   
Sbjct: 376 PKPCSIAEIIETCSARQESIRRSHRFLLKLDELPETIYGDR 416



 Score = 45.4 bits (106), Expect = 0.037,   Method: Composition-based stats.
 Identities = 32/287 (11%), Positives = 80/287 (27%), Gaps = 21/287 (7%)

Query: 191 NDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK 250
                  +    +     E+      +   +            L  ++    +       
Sbjct: 13  ERAEQEARAAHARLLAAFEVVPEGLVLFDAEDRFVLWNRRYEQLYAESGDMLVKGMRFED 72

Query: 251 DDV--LKTEKYPLLTSEESSLPEQEDFHTINL----NQYTKKQYFGTLQNNSKESFEYLS 304
                L+  +YP     E    E+   H         Q      +  ++         + 
Sbjct: 73  RLRTGLECGQYPEAVGREEEWLEERLTHHAEPTSKHEQRLPGNRWIRIEERRISEGGSVG 132

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNL--FYANPSFLLLTKYK------- 355
            R   +     +    L     +  P+P +VY    L   + N + +    Y+       
Sbjct: 133 IRVDITDLKMQEASFRL---LFEGNPMPMWVYDRETLKFLHVNQAAIDHYGYRLEQFLTM 189

Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYR--SDRTCIAASARLHTIQWNRENSLAM 413
           ++ DI+          A   +++ A          +D   I  +     +  N + +  M
Sbjct: 190 TLRDIQAPQDADRATAAVFDAEDPAAHDRSFRHLKADGGAIEVTVYSTCLNHNGKAASLM 249

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
             +   +A +  + + Q+    E++       ++  +  +L  +LE 
Sbjct: 250 AVVDVTEAKRAEKALLQHRDTLEEMVRSRTV-ELARQTEELERMLEQ 295


>gi|256419372|ref|YP_003120025.1| GAF sensor hybrid histidine kinase [Chitinophaga pinensis DSM 2588]
 gi|256034280|gb|ACU57824.1| GAF sensor hybrid histidine kinase [Chitinophaga pinensis DSM 2588]
          Length = 2037

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 71/258 (27%), Positives = 126/258 (48%), Gaps = 16/258 (6%)

Query: 567  EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
             +  L    +  +  S +KS+FLA +SHE+RTPL +++  ++ +     G L N + + Y
Sbjct: 1326 ARRSLEEKAEQLQLTSKYKSEFLANMSHELRTPLNSLLILAQQLYENHDGNL-NEKQVRY 1384

Query: 627  ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
            A  I   G+ ++ ++ND+LD+SKIESG ++  F  V  +E VS   +  +  +  K +  
Sbjct: 1385 AKTIHSCGDDLIQLINDILDLSKIESGYISTDFIKVRFNEVVSFVETTFKHISESKSLRF 1444

Query: 687  RTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE--------- 736
            R      +P+ +  D++ + QI  N+LSNA  FT  G ++ +                  
Sbjct: 1445 RIEMDEQLPQSLETDVQRLNQILKNLLSNAFKFTEKG-EVKLRIYEAKRNWRLMNGSLDS 1503

Query: 737  ----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
                V   +RDTG+G++  +     + F Q   S   +  GTGLGL +++ + D   G  
Sbjct: 1504 ADRVVAFEIRDTGIGISKDKQNIIFEAFQQAEGSTSRKYGGTGLGLSISRGLADLLGGSI 1563

Query: 793  YIFSTPAKGTLIEIIFPL 810
             + S   +G++  +  PL
Sbjct: 1564 ELESEVGRGSIFTLFLPL 1581


>gi|327191887|gb|EGE58878.1| putative two-component sensor histidine kinase/response regulator
           hybrid protein [Rhizobium etli CNPAF512]
          Length = 867

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 105/649 (16%), Positives = 202/649 (31%), Gaps = 49/649 (7%)

Query: 190 DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH 249
            +D  A           L    KG        Y   +       ++    + S       
Sbjct: 83  QSDSLARAFLNSHPDGTLITDDKGRIIYANAAYGALTGARKATEVQTLETLLSRHRESNE 142

Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
               L           E     +      N +     +    L +    S + L      
Sbjct: 143 ALYRLVNGLREGKEGREEFRLLRAVGPGSNNSGAHWYRLKARLLHQEDNSGKPLQIWQIT 202

Query: 310 SLSAYFDEGENLTPET------VDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEI 362
            ++A  D+ E    E       +D  P  FF     G +FY N +            +  
Sbjct: 203 DITAERDDQERFFKELQNAIDYLDHAPAGFFSAGRKGEIFYLNATLAEWLGLDLTKFLPG 262

Query: 363 AGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKAN 422
           +  +  L     ++         +          +  L  ++     SL +  I    + 
Sbjct: 263 SMSIGDL-----VAGEGLALIQSVQAEPGLKKTVTLDL-DLRKTNGQSLPVQIIHSVTSM 316

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
           +         I      +  + +      M+       T   IA ++ EG IL TN    
Sbjct: 317 RDGAPGESRTIVLAREKSSESGQSASAAAMRFTRFFNNTPMAIASVDGEGHILRTNAPFL 376

Query: 483 KLFG--YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
           KLF      +D+ + P    + Q +                       T   T E +   
Sbjct: 377 KLFSGVVSRDDLEKSPSLETIVQESDRPQLAAALAAAKDRQGDIAPLDTRTPTDEARYFR 436

Query: 541 LRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
             +                +   +++E K  + +++  +K+     +        ++H+ 
Sbjct: 437 FYVNAVIDQSDEAPEEAAIVYAVEVTEQKALEAQMAQTQKM-----NAVGTLAGGIAHDF 491

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
              LTAI+  S+ +  Q      +  + +    I R+ N    +V  LL  S+    K  
Sbjct: 492 NNVLTAILLSSDHLLLQARP--SDASFADLME-IKRNANRAAVLVRQLLAFSR----KQT 544

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716
           +    ++L + V +   LV    +   + +   +  ++  +  DL   +Q+ +N+  NA 
Sbjct: 545 MRPSVLNLTDVVGDLRMLVDRLLSGTNVKLDVQYGRDLWPVKTDLSQFEQVLINLCVNAR 604

Query: 717 HFTPSGGQIIISTT--------------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
              P GG + + T                 + + V++ V DTG G+    ++K  +PF  
Sbjct: 605 DAMPQGGTLTLRTRNLTAADVAAFNYSYMPAEDMVLVEVTDTGTGIAPDIMDKIFEPFFT 664

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
             +     G+GTGLGL +   +V  + G     S   KGT   +  P +
Sbjct: 665 TKD----VGKGTGLGLAMVYGIVKQSGGYIQPESEVGKGTTFRVFLPRH 709



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 50/488 (10%), Positives = 123/488 (25%), Gaps = 41/488 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAF------KMIGMRLCDVSDILHIDPNNHIGDLLKRQNT 142
            D  G +   +       G          + +  R  + ++ L+   N  + +  + +  
Sbjct: 102 TDDKGRIIYANAAYGALTGARKATEVQTLETLLSRHRESNEALYRLVNG-LREGKEGREE 160

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
           +     + P    +      L A  ++  +      + + I  +    +D     K L  
Sbjct: 161 FRLLRAVGPGSNNSGAHWYRLKARLLHQEDNSGKPLQIWQITDITAERDDQERFFKELQN 220

Query: 203 KFSHLHEIKKGHSSVEKEK---YDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK-TEK 258
              +L     G  S  ++    Y   +          K    S++       + L   + 
Sbjct: 221 AIDYLDHAPAGFFSAGRKGEIFYLNATLAEWLGLDLTKFLPGSMSIGDLVAGEGLALIQS 280

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE----YLSHRNHPSLSAY 314
                  + ++    D    N      +              E     L+          
Sbjct: 281 VQAEPGLKKTVTLDLDLRKTNGQSLPVQIIHSVTSMRDGAPGESRTIVLAREKSSESGQS 340

Query: 315 FDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLT-KYKSVDDIEIAGGLSTLLDA 372
                       +  P+    V   G++   N  FL L     S DD+E +  L T+   
Sbjct: 341 ASAAAMRFTRFFNNTPMAIASVDGEGHILRTNAPFLKLFSGVVSRDDLEKSPSLETI-VQ 399

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
                  A                  R      +               +          
Sbjct: 400 ESDRPQLAAALAAAKDRQGDIAPLDTRT---PTDEARYFRFYVNAVIDQSDEAPEEAAIV 456

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
              E  + +  + +M  +  ++ ++    + GIA           N  ++ +     + +
Sbjct: 457 YAVEVTEQKALEAQM-AQTQKMNAV-GTLAGGIA--------HDFNNVLTAIL-LSSDHL 505

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
           L         + + +     +    + +    L +  L  ++++ +      +  L    
Sbjct: 506 L------LQARPSDASFADLMEIKRNANRAAVLVRQLLAFSRKQTMRP---SVLNLTDVV 556

Query: 553 CYSLTMHD 560
                + D
Sbjct: 557 GDLRMLVD 564



 Score = 65.4 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 42/345 (12%), Positives = 100/345 (28%), Gaps = 41/345 (11%)

Query: 313 AYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
               + ++L    ++  P    +    G + YAN ++  LT  +   +++    L TLL 
Sbjct: 79  MPQHQSDSLARAFLNSHPDGTLITDDKGRIIYANAAYGALTGARKATEVQT---LETLLS 135

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE-----NSLAMTFIPFEKANQFPE 426
             + S N A+  ++    +        RL             +   +      + +   +
Sbjct: 136 RHRES-NEALYRLVNGLREGKEGREEFRLLRAVGPGSNNSGAHWYRLKARLLHQEDNSGK 194

Query: 427 NMPQNGIEPEDVDTRINKR---KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
            +    I     +    +R   +++  +  L    +    G     R+G I   N  +++
Sbjct: 195 PLQIWQITDITAERDDQERFFKELQNAIDYL----DHAPAGFFSAGRKGEIFYLNATLAE 250

Query: 484 LFGYPVEDILR--KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
             G  +   L         +     +++           L++T+           + L +
Sbjct: 251 WLGLDLTKFLPGSMSIGDLVAGEGLALIQSV---QAEPGLKKTVTLDLDLRKTNGQSLPV 307

Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
           +II                I      + K S + + A   +   + F         TP+ 
Sbjct: 308 QIIHSVTSMRDGAPGESRTI---VLAREKSSESGQSASAAAMRFTRFFNN------TPMA 358

Query: 602 A--------IIGFSEVIKNQRFGPLGNPRYIE--YANYIDRSGNL 636
                    I+  +        G +      +      I +  + 
Sbjct: 359 IASVDGEGHILRTNAPFLKLFSGVVSRDDLEKSPSLETIVQESDR 403


>gi|294508549|ref|YP_003572608.1| probable sensor/response regulator hybrid protein, [Salinibacter
           ruber M8]
 gi|294344878|emb|CBH25656.1| probable sensor/response regulator hybrid protein, putative
           [Salinibacter ruber M8]
          Length = 588

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 105/417 (25%), Positives = 165/417 (39%), Gaps = 14/417 (3%)

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG 472
              I         E      I       R   R +  +   L  ++E +   +  ++  G
Sbjct: 152 WALIGAMGVVALVEGATLRWIRSVCARLRTQGRTLREQRDLLDRLVETSPHAVVRVDASG 211

Query: 473 IILSTNRAVSKLFGYPVEDILRKPF------TVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
                N    ++ G  VE             +   E+ TP         +    + + L+
Sbjct: 212 APTGANGRAEEILGPDVEAASGDSDGATTGGSAGDEEKTPPGTRPLSQVLQVRRVVRNLK 271

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH--DISEWKQEKNKLSHAKKIAEKESSH 584
                     ++LS      +    +      H  D++E ++ K  L  A++  E+    
Sbjct: 272 CSVERPDGTRRVLSASGAPVRGADGTIREAVFHLEDVTEQERRKQALRRAEEEIEEADRL 331

Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR--YIEYANYIDRSGNLVLDIVN 642
           KS  LA ++HEIRTPLTAIIGF+E I                 YA+ I++SG  +LD   
Sbjct: 332 KSALLANMNHEIRTPLTAIIGFAEAIGTTASEMDLPEHTPLTGYADLIEQSGKRLLDTFE 391

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702
           D+LD+S++E+G+M L  E V L E    A+      A +K I +R           A+  
Sbjct: 392 DILDLSQLEAGQMELGIETVDLAEQARRAVQECGANAQDKEIDVR--LEATSVSARANEN 449

Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
            V+    N+L NAI +T  GG + + T        +L V D G GM    +++  +PF Q
Sbjct: 450 GVQVALQNLLDNAIKYTADGGTVWVRTRPEP-GRAVLEVEDDGAGMEPETVDQLFEPFRQ 508

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819
                    EG G+GL + K       G   + + P  G+   I FP+ D S  HDC
Sbjct: 509 ASTGMAREYEGAGVGLAVTKEATKQMGGAIEVETKPGAGSRFLIRFPMADHST-HDC 564



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/378 (8%), Positives = 79/378 (20%), Gaps = 26/378 (6%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN------NHIGDLLKRQN 141
            +DA G     +    + +G       G      +     D          +  +L+ + 
Sbjct: 206 RVDASGAPTGANGRAEEILGPDVEAASGDSDGATTGGSAGDEEKTPPGTRPLSQVLQVRR 265

Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
                            V +  +  P+   +           +         +   +R +
Sbjct: 266 VVRNLKCSVERPDGTRRV-LSASGAPVRGADGTIR--EAVFHLEDVTEQERRKQALRRAE 322

Query: 202 KKFSHLHEIKKGHSSVEKEKYD-----IFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256
           ++      +K    +    +       I            +  +   T    + D + ++
Sbjct: 323 EEIEEADRLKSALLANMNHEIRTPLTAIIGFAEAIGTTASEMDLPEHTPLTGYADLIEQS 382

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
            K  L T E+     Q +   + L   T        +   +             L A   
Sbjct: 383 GKRLLDTFEDILDLSQLEAGQMELGIETVDLAEQARRAVQECGANAQDKEIDVRLEATSV 442

Query: 317 EGENLT----PETVDKCPIPFFVYSHGNLFYANPS---FLLLTKYKSVDDIEIAGGLSTL 369
                         +         + G   +          + + +          +  L
Sbjct: 443 SARANENGVQVALQNLLDNAIKYTADGGTVWVRTRPEPGRAVLEVEDDGAGMEPETVDQL 502

Query: 370 LDAPKLSDNNAIKP-----VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
            +  + +     +      V L  +          +         S  +   P    +  
Sbjct: 503 FEPFRQASTGMAREYEGAGVGLAVTKEATKQMGGAIEVETKPGAGSRFLIRFPMADHSTH 562

Query: 425 PENMPQNGIEPEDVDTRI 442
                      E  D   
Sbjct: 563 DCGDGPVEPSEEVADAHR 580


>gi|254445728|ref|ZP_05059204.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198260036|gb|EDY84344.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 1032

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 111/647 (17%), Positives = 222/647 (34%), Gaps = 73/647 (11%)

Query: 184 VHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL 243
           V     + D   +   +D+    L   +   +   +E      ++    +   +   +S 
Sbjct: 53  VQRVAENRDRLEVVGAIDEAVYALLTDRFSSADGREELNVEVFERLDVGNDYFERDSNSG 112

Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES---F 300
              +       +T +  +    +  L   E+   + +    +K        +   +    
Sbjct: 113 DVLHVAWLGAAQTLRDGMQGDWQRLLRGLEELVEVRVALAKEKDAPAVFAQDLPRAQLKL 172

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDI 360
             L      ++ +   +  +   E  +   +       G +      F L+    S  D 
Sbjct: 173 FALGMALDGAIQSSSGDEASRLIEGAENLFVQV-EADLGRVRRL-RGFELINGVVSGLDT 230

Query: 361 EIAGGLST--LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
            I   L    +L    +    A + +          +       ++    + L +     
Sbjct: 231 RILYALGEYEILRPRLMKRLEAKRRLSFLGILGQSESILGDSANLELPSRDLLVLADS-- 288

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
                            + ++  ++  ++  +  ++ +I      G+   +         
Sbjct: 289 --------FGRAIKDIRDSLEQTLSDEEVATKWARIWTI------GLVAFSA-------- 326

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
              + + GY    +L K   +     + S  N  L   +   + Q               
Sbjct: 327 -FATYMLGY----LLVKNLRM--AHESISAYNQTLERQVEEGVAQ--------------- 364

Query: 539 LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
                   ++   +       D+    Q +     A+K A      KS+FLA +SHEIRT
Sbjct: 365 ----ANKSRMETEN----LNRDL--RLQTERASEMAEK-AILAERLKSEFLANMSHEIRT 413

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
           P+  +IG + ++++       N    EY   +  S   +L ++ND+LD+SKIE+GKM + 
Sbjct: 414 PMNGVIGMTHLLQDTEL----NETQQEYVETMLNSTESLLVLINDILDLSKIEAGKMTIE 469

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIH 717
              V + +  ++  SL    A  K + + + +  +     + D   +KQ+  N+LSNAI 
Sbjct: 470 QMDVDVMDLQAQVSSLFASNAQAKGVELVSVYPLDCYKTFVTDPYRLKQVLANLLSNAIK 529

Query: 718 FTPSGG---QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           FT  G    +I I         +   V DTG+G+    ++   K F Q   S   R  GT
Sbjct: 530 FTEKGDVTLRIEIEEPREDGARIRFEVVDTGIGIAPEVVDTLFKSFSQADASTTRRFGGT 589

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL-YDTSHPHDCI 820
           GLGL +++ +V    G+  + S    GT       + Y  S P  C+
Sbjct: 590 GLGLAISQRLVQYLGGRLQVESELGVGTTFTFALEMKYGDSTPRFCV 636


>gi|254428255|ref|ZP_05041962.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Alcanivorax sp. DG881]
 gi|196194424|gb|EDX89383.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Alcanivorax sp. DG881]
          Length = 699

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 82/274 (29%), Positives = 138/274 (50%), Gaps = 10/274 (3%)

Query: 546 KKLPFSSCYSLTMHD----ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
             +           D    +      + +L+ A+  AE  S  KS FLA +SHEIRTP+T
Sbjct: 276 VPVLGRDEIGALAEDFNAMVDSIHHAQTQLAQARMQAEDASQTKSQFLANISHEIRTPMT 335

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           AI+G++E++++             Y   I  +G+ +L ++ND+LD+S+IE+G+++     
Sbjct: 336 AILGYTELLRDGSLNATDK---RRYLTIIQHNGDALLALINDVLDLSRIEAGQLHPEQRL 392

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTP 720
            S    + E I  +QL A EK I +R  +  ++P  +  D   ++QI +N++ NA+ FT 
Sbjct: 393 FSARVLLDEVIDSLQLRATEKDIDLRIHYLTDLPPTVSGDAFRLRQILVNLIGNAVKFTE 452

Query: 721 SGGQIIISTTHTSNE-EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
            G ++ +          + + V DTG+G++  EL +   PF Q   S   R  GTGLGL 
Sbjct: 453 RG-RVHVGVNWDEEASRLNVSVEDTGIGISEGELSRIFLPFSQADASHTRRYTGTGLGLS 511

Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
           +A+ +  A  G   +FST  +G+   +  PL   
Sbjct: 512 IARQLARAQDGDIQVFSTLNQGSCFVLDIPLVRA 545


>gi|163814592|ref|ZP_02205981.1| hypothetical protein COPEUT_00743 [Coprococcus eutactus ATCC 27759]
 gi|158450227|gb|EDP27222.1| hypothetical protein COPEUT_00743 [Coprococcus eutactus ATCC 27759]
          Length = 528

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 52/244 (21%), Positives = 115/244 (47%), Gaps = 4/244 (1%)

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           +    +        + + ++  F++ +SH+ R+PLT+I G+ E + +   G +   R+ +
Sbjct: 247 ELARYMEEMADELSRSNEYRKSFISNISHDFRSPLTSIKGYIEAMLD---GTIPLERHEK 303

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           Y   +      +  +   LL+++  +S  + L      + + ++  ++  +    ++ I 
Sbjct: 304 YLGIVLNEAQRLTKLTQGLLELNNFDSFDLQLDKSNFDIRDIITPTVNTFEKRCQDRGIF 363

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           + + F  +   + AD   ++Q+  N++ NAI FTP G QI +  T   + ++ + V+D G
Sbjct: 364 LESVFLTDNTIVYADRTKIQQVIYNLVDNAIKFTPEGRQIRVQVT-EKDNKIFISVKDEG 422

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+     +K  + F +   S+     GTGLGL + K ++ A+  +  + S   KG+   
Sbjct: 423 IGIPKDAQKKVFERFYKTDPSRGKDKTGTGLGLAITKEIIKAHGEQITLTSEEGKGSEFI 482

Query: 806 IIFP 809
              P
Sbjct: 483 FSLP 486


>gi|23014183|ref|ZP_00054013.1| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 380

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 64/372 (17%), Positives = 144/372 (38%), Gaps = 14/372 (3%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
              +     +  ++  A  D IAI +R  G  +  N A  ++ G+   +++ +       
Sbjct: 19  AATLRRTEAKFSTVFRACPDLIAITDRATGRFIEVNDAFERIMGWTKPEVVGRTSGELDT 78

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS--LRIIIKKLPFSSCYSLTMHD 560
             + +  +  L  +      +          K  ++ +  + + +  L           D
Sbjct: 79  WESLAERDRMLAAL--GTAARLENFEVRFRRKSGEVFTALISLEVVDLSGQPSLIFVARD 136

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           IS  K ++  L    +  E+ +     F    +H++  P   I  F++ I  ++FG + +
Sbjct: 137 ISARKADEMLLRRTAEELERSNMELERFAYVAAHDLLEPCRTICSFAQ-ILERKFGAVLD 195

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
               EY  ++      + +++  +L  S+  +G        + L E + + IS +     
Sbjct: 196 GEGREYLGFLVGGAQRMRELIQGVLGYSR--AGMAAAQMVDIDLAEVLHDVISDLGDAIR 253

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-SNEEVIL 739
            +   +       +P +  D   ++Q+ +N++ N + F   G    +         E  L
Sbjct: 254 TRGGAVEV---GPLPVVRGDPAQLRQLLVNLVGNGLKFHAEGALPRVRVGCENREGEWCL 310

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V D G+G+ +   +     F ++      R  G G+GL +A+ +VDA+ G+ ++ S P 
Sbjct: 311 TVEDNGIGIASEYQDDIFGIFRRLHGPD--RYPGAGIGLAVARRIVDAHGGRIWVESEPG 368

Query: 800 KGTLIEIIFPLY 811
           +G+      P+ 
Sbjct: 369 QGSRFCFTLPMA 380



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/168 (12%), Positives = 40/168 (23%), Gaps = 24/168 (14%)

Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSV 357
                 R    ++A     E         CP    +     G     N +F  +  +   
Sbjct: 7   PVADKSRRASGIAATLRRTEAKFSTVFRACPDLIAITDRATGRFIEVNDAFERIMGWTKP 66

Query: 358 DDIEIAGG----------LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
           + +    G             +L A   +       V   R       A   L  +  + 
Sbjct: 67  EVVGRTSGELDTWESLAERDRMLAALGTAARLENFEVRFRRKSGEVFTALISLEVVDLSG 126

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
           + SL                        +++  R    ++E   M+L 
Sbjct: 127 QPSLIFVARDISARKA------------DEMLLRRTAEELERSNMELE 162



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/244 (7%), Positives = 59/244 (24%), Gaps = 11/244 (4%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLW 150
           A G   E+++   + +G    +++G    ++     +   + +   L            +
Sbjct: 46  ATGRFIEVNDAFERIMGWTKPEVVGRTSGELDTWESLAERDRMLAALGTAARLENFEVRF 105

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
             +  +  V   L +L +   + + S      +            L +R  ++    +  
Sbjct: 106 RRK--SGEVFTALISLEVVDLSGQPS---LIFVARDISARKADEMLLRRTAEELERSNME 160

Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270
            +  + V         +        ++ K  ++ +    +           +      + 
Sbjct: 161 LERFAYVAAHDLLEPCRTICSFAQILERKFGAVLDGEGREYLGFLVGGAQRMRELIQGVL 220

Query: 271 EQEDFHTINLNQ------YTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
                                      L +  +     +     P +     +   L   
Sbjct: 221 GYSRAGMAAAQMVDIDLAEVLHDVISDLGDAIRTRGGAVEVGPLPVVRGDPAQLRQLLVN 280

Query: 325 TVDK 328
            V  
Sbjct: 281 LVGN 284


>gi|296160973|ref|ZP_06843785.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. Ch1-1]
 gi|295888862|gb|EFG68668.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. Ch1-1]
          Length = 782

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 83/497 (16%), Positives = 158/497 (31%), Gaps = 40/497 (8%)

Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRT 392
           F +   G +   NP    +  Y+  + +     L  L      S       +   R    
Sbjct: 28  FALSPDGRIQSWNPGGEAIYGYRRDEVLGQP--LDILYTEEDRSRGLPAAGLETARRTNR 85

Query: 393 CIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM 452
                     ++ +       + +      +         I  +  D +     +     
Sbjct: 86  ---YDTEGWRVRKDG-TVFWASMVTTTLRAEDGRITGFAKIVRDMTDKKTAHDAVLESER 141

Query: 453 QLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
               ++   +D  I +++ EGII + N    ++ GY  E+++   F+ F      +    
Sbjct: 142 HFRMLVHGVTDYAIYMLSPEGIITNWNPGARRIKGYAAEEVIGSHFSRFYTPEDAAAGLP 201

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQE 567
               +         E       +  +     ++I  +               DI+E  + 
Sbjct: 202 QY-GLAVAAREGRFEAEGWRVKRNGERFLAHVVIDAIRDDDGTLAGFAKITRDITERAEA 260

Query: 568 KNKLSHAKKIAEKES--SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
              L   +    +             V+H+    L  + G  E +   R G  G     E
Sbjct: 261 ARLLEETRAALFQSQKMEAIGKLTGGVAHDFNNVLQVLRGNLE-LLEHRHGRDG--WTRE 317

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
                  +      + + LL   +    +  L    ++L  A+     L++  A  + + 
Sbjct: 318 RLEKAIDAVERGAKLASQLLSFGR----QQPLQPVVINLAPAIRGMDDLLR-RALGETVE 372

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT--------------H 731
           + T  A  +   L D+  ++ + LN+  NA    P GG++ I  +               
Sbjct: 373 VETVVAGGLWNTLIDIHQLENVLLNLAINARDAMPEGGKLTIELSNAMLDDHYVAGLPDV 432

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
              + V+L V DTG GM    L++A  PF          G GTGLGL  A   V  + G 
Sbjct: 433 PPGQYVLLAVTDTGTGMPADVLQRAFDPFFTTKP----EGRGTGLGLSTAYGFVKQSGGH 488

Query: 792 FYIFSTPAKGTLIEIIF 808
             ++S    GT ++I  
Sbjct: 489 IRLYSEVGHGTTVKIYL 505



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/290 (10%), Positives = 76/290 (26%), Gaps = 12/290 (4%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + +   G ++  +       G    +++G  L  +              L   + T   
Sbjct: 27  IFALSPDGRIQSWNPGGEAIYGYRRDEVLGQPLDILYTEEDRSRGLPAAGLETARRTNRY 86

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
            T  W +          +    + + +   +GF    IV                ++ F 
Sbjct: 87  DTEGWRVRKDGTVFWASMVTTTLRAEDGRITGFAK--IVRDMTDKKTAHDAVLESERHFR 144

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHL---RMKNKVSS--LTEYYAHKDDVLKTEKYP 260
            L      ++        I +  +P           +V     + +Y  +D      +Y 
Sbjct: 145 MLVHGVTDYAIYMLSPEGIITNWNPGARRIKGYAAEEVIGSHFSRFYTPEDAAAGLPQYG 204

Query: 261 LLTSEESSLPEQEDFHT-INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
           L  +      E E +    N  ++        ++++      +       +  A      
Sbjct: 205 LAVAAREGRFEAEGWRVKRNGERFLAHVVIDAIRDDDGTLAGFAKITRDITERAEAARLL 264

Query: 320 NLTPETVDKCP--IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
             T   + +          + G     N    +L    +++ +E   G  
Sbjct: 265 EETRAALFQSQKMEAIGKLTGGVAHDFNNVLQVLRG--NLELLEHRHGRD 312



 Score = 73.5 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 18/136 (13%), Positives = 48/136 (35%), Gaps = 6/136 (4%)

Query: 459 EATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
           E+ SD  I  ++ +G I S N     ++GY  +++L +P  +   +   S        + 
Sbjct: 20  ESVSDYAIFALSPDGRIQSWNPGGEAIYGYRRDEVLGQPLDILYTEEDRSRGLPA-AGLE 78

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSH 573
           +       +       K+  +    ++   L             + D+++ K   + +  
Sbjct: 79  TARRTNRYDTEGWRVRKDGTVFWASMVTTTLRAEDGRITGFAKIVRDMTDKKTAHDAVLE 138

Query: 574 AKKIAEKESSHKSDFL 589
           +++         +D+ 
Sbjct: 139 SERHFRMLVHGVTDYA 154


>gi|257419429|ref|ZP_05596423.1| predicted protein [Enterococcus faecalis T11]
 gi|257161257|gb|EEU91217.1| predicted protein [Enterococcus faecalis T11]
          Length = 576

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 71/363 (19%), Positives = 155/363 (42%), Gaps = 30/363 (8%)

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
            Q   +L+    G+ II+ +G +   N  + ++ G        K       +        
Sbjct: 235 EQFHELLDELMIGVFIIDTQGRLRLLNPKMQEMLGLSD-----KNIQSNYLEVIQDADLI 289

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY--SLTMHDISEWKQEKN 569
           +L   +  +     ++IT+        L L +       ++ Y      +D++  +Q + 
Sbjct: 290 HLIHQVVAEKNSLHQEITVTQGPTPLRLDLSLRYLDDQSANDYQVLGIAYDLTRVRQLE- 348

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
                          + DF++ VSHE++TP+T+++GF+E + +            ++ + 
Sbjct: 349 -------------KMQKDFVSNVSHELKTPVTSLLGFTETLIDG--AKEDPEVLDQFLHI 393

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           + +    +  ++ ++L++S+  S  +    + ++L++ ++E +   Q     K++    +
Sbjct: 394 MQKDAQRLQQLIQEILELSR-GSATIPYAEQEITLEKFITEILGSYQQQLAAKQLK---T 449

Query: 690 FANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747
             + +P             I  N++ NAI ++   GQI IS     N+++ L V+DTG+G
Sbjct: 450 VVHGLPESQFFTKYELFYPIVKNLIENAIQYSQENGQITISYAIE-NQQLRLSVQDTGIG 508

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           ++  + E+  + F ++  ++     GTGLGL + +   +   GK  I S    GT   I 
Sbjct: 509 ISQKDQERIFERFYRVDKARSRHSGGTGLGLAIVQNYTELLGGKIAIDSHLGLGTTFTIT 568

Query: 808 FPL 810
            PL
Sbjct: 569 LPL 571


>gi|51473428|ref|YP_067185.1| histidine kinase sensor protein [Rickettsia typhi str. Wilmington]
 gi|51459740|gb|AAU03703.1| histidine kinase sensor protein [Rickettsia typhi str. Wilmington]
          Length = 498

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 89/255 (34%), Positives = 142/255 (55%), Gaps = 6/255 (2%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I E       L       EK SS  + F A +SHE+RTPL AIIGFSE++ ++R      
Sbjct: 245 IEEQLATNRNLKAQIVKVEKTSSSNTKFFANISHELRTPLNAIIGFSEILMSER----DT 300

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
            +   Y   I  +G  +L ++ND+LD+SK  + K+ +    + L++ +S ++ L++  A+
Sbjct: 301 EKSKNYIKDIHDAGKHLLSMINDILDLSKASADKLKVDNIDLDLNKLISSSLILIKPRAD 360

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-VIL 739
           +  + + +        I AD + +KQ+ LN+LSNA+ FT +GG + I+       + V +
Sbjct: 361 QAEVELISRLPKEHIVINADPKRLKQVLLNLLSNAVKFTNTGGSVTIALEKDELAKLVYI 420

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
           +V DTG+G+   ++ K +  FGQI +    + EGTGLGLPL K +V+   GKF + S   
Sbjct: 421 KVIDTGIGIEEKDIPKTLSEFGQIDSELSRKYEGTGLGLPLTKKLVELMNGKFDLQSQIN 480

Query: 800 KGTLIEIIFPLYDTS 814
           KGT + I F +YD S
Sbjct: 481 KGTTVTITF-VYDGS 494


>gi|329849065|ref|ZP_08264093.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family
           protein [Asticcacaulis biprosthecum C19]
 gi|328844128|gb|EGF93697.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family
           protein [Asticcacaulis biprosthecum C19]
          Length = 595

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 79/347 (22%), Positives = 147/347 (42%), Gaps = 25/347 (7%)

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL----S 540
           F      +  +             +        S       +        + + L     
Sbjct: 162 FVVEGWWLSARNIRPDEVTPALDRVVSIAMGSGSTAPMGRFDVDVESLDFKGQSLSTAQW 221

Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH----------KSDFLA 590
             +I+      +   L    +S  K  + +     + A + ++           KS FLA
Sbjct: 222 YLLILGAWLVLTGGFLVYRFLSVRKGYEVEQKRQAEEARELAAARTAAEAASSAKSQFLA 281

Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650
            +SHE+RTPL AI+G+++++K+           +     I  SG  +L ++ D+LDI+K+
Sbjct: 282 NMSHELRTPLNAILGYAQLLKSSDLSSQQ----LSAVKTIQHSGEHLLTVITDILDIAKV 337

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIAL 709
           E+G+M L      +         +V++ A +K +    S A ++P+ ++AD + ++Q+ +
Sbjct: 338 EAGRMELMPGGFDIRACALTVGQMVRVRAEDKGLSFSISIAEDVPQYVVADEKRMRQVLI 397

Query: 710 NILSNAIHFTPSGGQ---IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
           N+L NAI FT +G     + + +    +  +   V DTGVG+   +L+   +PF Q  NS
Sbjct: 398 NLLGNAIKFTAAGEVRLSVTVVSAGEESARLCFAVSDTGVGIQADQLDSIFRPFEQAGNS 457

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI--IFPLY 811
              +  GTGLGL +   +V    G   + S   +G+   +   FPL 
Sbjct: 458 IS-KSGGTGLGLSITHQIVKLMGGDIKVESEVGQGSCFTVEAEFPLA 503


>gi|299137309|ref|ZP_07030491.1| PAS/PAC sensor signal transduction histidine kinase [Acidobacterium
           sp. MP5ACTX8]
 gi|298600714|gb|EFI56870.1| PAS/PAC sensor signal transduction histidine kinase [Acidobacterium
           sp. MP5ACTX8]
          Length = 656

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 91/540 (16%), Positives = 193/540 (35%), Gaps = 43/540 (7%)

Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH--GNLFYAN 345
             G +                       +    L  E  +   +  FV+        + N
Sbjct: 144 ENGRIGGVYDAFRNMTEVVMGARRLRESEARLKLATEVAE---LGVFVWDTVEDLGSWEN 200

Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW 405
                +      +D  ++G             +   + +     +            +  
Sbjct: 201 DRMYEIFGRTR-EDGPVSGATFMNEIVHADYQSTFWQAMDATLQEGEPFHFKG---PMYL 256

Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM---EIEVMQLCSILEATS 462
           + ++   +      + +         G   +  + R  + +       + +L +I+ ++ 
Sbjct: 257 SDKSLRWIEVNGNLQPSTDGSTGKILGTMRDITEMRNIEEEGLAGAARLGELAAIVASSD 316

Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522
           D I   N +GII S N A  ++FGY  ++I+       + +   S     +  I +    
Sbjct: 317 DVILSKNLDGIITSWNDAAVRVFGYSADEIVGTSILKLIPEELHSDEKTIIEHIRAGR-- 374

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLSHAKKIA 578
           +     T+  TK+ + + + + +  +   +   +     + DIS  ++ +  L  A+KIA
Sbjct: 375 RVEHFETVRVTKDGRKIEVSLTVSPIKDRTGQVIGASKILRDISSRRRIEQSLLQAEKIA 434

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
                      A ++HEI  PL A++    +++      + +     Y    +     V 
Sbjct: 435 -----ATGRMAATIAHEINNPLEAVMNLLYLLR----PKITDDDGRGYLATAEDELGRVS 485

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
            I    L   + E    +L     SL      A+++ +       I I+  F +   +++
Sbjct: 486 HIAKQTLGYYR-EHAAASLA----SLSVITEHALTIYEPRCAIAGIGIKKFFDSKT-KVV 539

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTT--HTSNEEVILRVRDTGVGMTNYELEKA 756
                + Q+  N+++N+I+  P+GG + +S +   +  E ++L + DTGVG+T   L + 
Sbjct: 540 FRRGEMMQVISNLIANSIYAMPTGGTLSVSVSDVRSQGEGIVLAIEDTGVGITPDVLPRV 599

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST---PAKGTLIEIIFPLYDT 813
            + F            GTG+GL +AK  V+ + G+  I S       GT + I  PL   
Sbjct: 600 FEAFFTT-----RTTVGTGIGLFVAKQFVEGHGGRISIESRSDPEDHGTTVRIFLPLQTA 654



 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/284 (10%), Positives = 73/284 (25%), Gaps = 19/284 (6%)

Query: 317 EGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
           E    T   +   P P    +    +F  N + +     K  + +        +      
Sbjct: 42  ETLLATVNLMLHSPFPTILSWGPEMVFLYNDAAISTLTTKHPNALGGLY--RDVFHEAWE 99

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
             +  ++                    I +N                +            
Sbjct: 100 LVSADLEDCFYR---GKTAVRDNMFIPILFNGVLEDHYWSYSLIPVYENGRIGGVYDAFR 156

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILST-NRAVSKLFGYPVED--I 492
              +  +  R++     +L    E    G+ + +    + S  N  + ++FG   ED  +
Sbjct: 157 NMTEVVMGARRLRESEARLKLATEVAELGVFVWDTVEDLGSWENDRMYEIFGRTREDGPV 216

Query: 493 LRKPFTVFLEQNT-PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
               F   +      S     +   L        +     S K  + + +   ++     
Sbjct: 217 SGATFMNEIVHADYQSTFWQAMDATLQEGEPFHFKGPMYLSDKSLRWIEVNGNLQPSTDG 276

Query: 552 --SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
                  TM DI+E +  + +           ++   +  A V+
Sbjct: 277 STGKILGTMRDITEMRNIEEE-------GLAGAARLGELAAIVA 313



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 33/326 (10%), Positives = 79/326 (24%), Gaps = 27/326 (8%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL-HIDPNNHIGDLLKRQNTWYGKTTLW 150
            G +   ++   +  G  A +++G  +  +     H D    I  +   +   + +T   
Sbjct: 325 DGIITSWNDAAVRVFGYSADEIVGTSILKLIPEELHSDEKTIIEHIRAGRRVEHFETVRV 384

Query: 151 PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
             +G  + V + ++  PI  R  +  G     I+              + +K        
Sbjct: 385 TKDGRKIEVSLTVS--PIKDRTGQVIGASK--ILRDISSRRRIEQSLLQAEK-------- 432

Query: 211 KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270
                +         + +   P   + N +  L       D               S + 
Sbjct: 433 ----IAATGRMAATIAHEINNPLEAVMNLLYLLRPKITDDDGRGYLATAEDELGRVSHIA 488

Query: 271 E------QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
           +      +E       +     ++  T+             +   S +        +   
Sbjct: 489 KQTLGYYREHAAASLASLSVITEHALTIYEPRCAIAGIGIKKFFDSKTKVVFRRGEMMQV 548

Query: 325 TVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
             +      +    G     + S +       V  IE  G        P +         
Sbjct: 549 ISNLIANSIYAMPTGGTLSVSVSDVRSQGEGIVLAIEDTGVG----ITPDVLPRVFEAFF 604

Query: 385 MLYRSDRTCIAASARLHTIQWNRENS 410
               +  T I        ++ +    
Sbjct: 605 TTRTTVGTGIGLFVAKQFVEGHGGRI 630


>gi|326477630|gb|EGE01640.1| two-component osmosensing histidine kinase [Trichophyton equinum
           CBS 127.97]
          Length = 1321

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 75/265 (28%), Positives = 130/265 (49%), Gaps = 22/265 (8%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           +S  +    + + A++ AE  +  KS+FLA +SHEIRTP+  IIG +++  +        
Sbjct: 703 VSSLRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDD---LK 759

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
           P   E  N +    N +L I++D+LDISKIE+ +M +   P ++   V  A+  + + AN
Sbjct: 760 PYPREMLNVVHSLANSLLTIIDDILDISKIEANRMVIESIPFTMRGTVFNALKTLAVKAN 819

Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-------- 731
           EK + +     +++P  ++ D   ++QI LN++ NAI FT  G ++ +            
Sbjct: 820 EKFLNLTYQVDSSVPDYVIGDPFRLRQIILNLVGNAIKFTEHG-EVTLEIKKHVPPPPAD 878

Query: 732 -TSNEEVI--------LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
                EV           V+DTG+G+   +L+     F Q   S   +  GTGLGL ++K
Sbjct: 879 GEPEREVCADDEYAYEFSVQDTGIGIAKDKLDMIFDTFQQADGSTTRKFGGTGLGLSISK 938

Query: 783 AMVDANMGKFYIFSTPAKGTLIEII 807
            +V+   G  ++ S   +G+     
Sbjct: 939 RLVNLMGGDVWVTSEYGRGSTFHFT 963


>gi|261752341|ref|ZP_05996050.1| multi-sensor hybrid histidine kinase [Brucella suis bv. 5 str. 513]
 gi|261742094|gb|EEY30020.1| multi-sensor hybrid histidine kinase [Brucella suis bv. 5 str. 513]
          Length = 906

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 99/626 (15%), Positives = 208/626 (33%), Gaps = 51/626 (8%)

Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271
           +G      + Y   +  +    +R  ++V +     +     L       L+++E     
Sbjct: 153 RGQIVYANQAYARMTGATDADGIRPLDQVLASEPAASDAIYRLTNAVRDGLSAQEEVRIS 212

Query: 272 QEDFHTINLNQY--TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE-----NLTPE 324
                  N +      +     L+  ++     ++ +         ++            
Sbjct: 213 GGLSRGANGSLAPVWYRIKARALEGGAEFKGPLVAWQVADISEERAEQERFFQELQEAIN 272

Query: 325 TVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
            +D  P  FF     G + Y N +               +  L+ ++    ++       
Sbjct: 273 HLDHAPAGFFSANPAGRIIYLNATLAEWLGVDLTQYTPGSLTLNDIVAGSGMA------L 326

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
           +   +++      +     +      SLA+ F    +  +         I  +  +   +
Sbjct: 327 IKAVKAEPGTSRNTVIDLDLIKRNGQSLAVRFYHRVQTARDGMPGTTRTIVLDRAEGDDS 386

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG--YPVEDILRKPFTVFL 501
                   ++      +    IA ++ EG  L TN     +F      + I R+     +
Sbjct: 387 SVAQRSAEVRFTRFFNSAPMAIAAVDAEGHTLRTNARFLDIFSGVVDRDAIDRRVKLENV 446

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF----SSCYSLT 557
                    +                 T+    EE+ +   +                ++
Sbjct: 447 VHERDRETFNKALAAAFAGQASISPVDTVLPGNEERHIRFYMSPVTDLGGEAAEEAAVIS 506

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
             + +E K  +N+++ ++K+              ++H+    LTAII  S+++       
Sbjct: 507 AVETTEQKALENQMAQSQKM-----QAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNH--R 559

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
             +P + +  N I ++ N    +V  LL  S+    +  L  E + L + +++ + ++  
Sbjct: 560 ASDPSFPDIMN-IKQNANRAASLVRQLLAFSR----RQTLRPEVLDLTDVLAD-LRMLLA 613

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT------- 730
               K I ++     ++  + ADL   +Q+A+N+  NA    P GGQI + T        
Sbjct: 614 RLVGKDIELKIDHGRDLWPVKADLGQFEQVAVNLAVNARDAMPEGGQITLRTRNIPAADA 673

Query: 731 -------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
                      + V+  V DTG G+    LEK  +PF          G+GTGLGL +   
Sbjct: 674 AKLHYRDLPEADYVVFEVEDTGTGIPADVLEKIFEPFFTTK----EVGKGTGLGLSMVYG 729

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFP 809
           ++    G  Y  S   KGT  +I  P
Sbjct: 730 IIKQTGGFIYCDSEVGKGTTFKIFLP 755



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/238 (11%), Positives = 66/238 (27%), Gaps = 7/238 (2%)

Query: 319 ENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
           ++L    +D  P    +    G + YAN ++  +T     D I     +  L   P  SD
Sbjct: 133 QDLAHSFMDTQPEGTVISDPRGQIVYANQAYARMTGATDADGIRPLDQV--LASEPAASD 190

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
                   +                 +    +   + +    +A +         +  + 
Sbjct: 191 AIYRLTNAVRDGLSAQEEVRISGGLSRGANGSLAPVWYRIKARALEGGAEFKGPLVAWQV 250

Query: 438 VDTRINKRKMEIEVMQLC-SI--LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
            D    + + E    +L  +I  L+    G    N  G I+  N  +++  G  +     
Sbjct: 251 ADISEERAEQERFFQELQEAINHLDHAPAGFFSANPAGRIIYLNATLAEWLGVDLTQYTP 310

Query: 495 KPFT-VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
              T   +   +   +   +           ++   +    +   +     ++     
Sbjct: 311 GSLTLNDIVAGSGMALIKAVKAEPGTSRNTVIDLDLIKRNGQSLAVRFYHRVQTARDG 368



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 49/420 (11%), Positives = 103/420 (24%), Gaps = 38/420 (9%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD--ILHIDPNNHIGDLLKRQNTWYGKT 147
           D  G +   ++   +  G      I   L  V        D    + + ++   +   + 
Sbjct: 151 DPRGQIVYANQAYARMTGATDADGI-RPLDQVLASEPAASDAIYRLTNAVRDGLSAQEEV 209

Query: 148 TL-----WPIEGTNLYVPIDLAALPIYSRNREFSG-FRGFGIVHVNRVDNDPRALGKRLD 201
            +         G+   V   + A  +     EF G    + +  ++    +     + L 
Sbjct: 210 RISGGLSRGANGSLAPVWYRIKARALEGGA-EFKGPLVAWQVADISEERAEQERFFQELQ 268

Query: 202 KKFSHLHEIKKGHSSVEKEK---YDIFSQQSPPPHLRMKNKVSSLTEYYAHKD---DVLK 255
           +  +HL     G  S        Y   +          +    SLT           ++K
Sbjct: 269 EAINHLDHAPAGFFSANPAGRIIYLNATLAEWLGVDLTQYTPGSLTLNDIVAGSGMALIK 328

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN--NSKESFEYLSHRNHPSLSA 313
             K    TS  + +                     T ++          L        S 
Sbjct: 329 AVKAEPGTSRNTVIDLDLIKRNGQSLAVRFYHRVQTARDGMPGTTRTIVLDRAEGDDSSV 388

Query: 314 YFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLT-KYKSVDDIEIAGGLSTLLD 371
                E       +  P+    V + G+    N  FL +       D I+    L  +  
Sbjct: 389 AQRSAEVRFTRFFNSAPMAIAAVDAEGHTLRTNARFLDIFSGVVDRDAIDRRVKLENV-V 447

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
             +  +         +    +       L     N E  +     P              
Sbjct: 448 HERDRETFNKALAAAFAGQASISPVDTVL---PGNEERHIRFYMSPVTDLGGEAAEEAAV 504

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSI----------LEATSDGIAIINREGIILSTNRAV 481
               E  + +  + +M  +  ++ ++                 I + +    +L TN   
Sbjct: 505 ISAVETTEQKALENQM-AQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSD---LLLTNHRA 560



 Score = 48.5 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 45/134 (33%), Gaps = 12/134 (8%)

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY-LT 514
           S ++   +G  I +  G I+  N+A +++ G    D   +P    L     +    Y LT
Sbjct: 138 SFMDTQPEGTVISDPRGQIVYANQAYARMTGATDAD-GIRPLDQVLASEPAASDAIYRLT 196

Query: 515 EILSLDLRQTLEKITLG---STKEEKLLSLRIIIKKLPFSSC-------YSLTMHDISEW 564
             +   L    E    G         L  +   IK               +  + DISE 
Sbjct: 197 NAVRDGLSAQEEVRISGGLSRGANGSLAPVWYRIKARALEGGAEFKGPLVAWQVADISEE 256

Query: 565 KQEKNKLSHAKKIA 578
           + E+ +     + A
Sbjct: 257 RAEQERFFQELQEA 270


>gi|297538562|ref|YP_003674331.1| integral membrane sensor hybrid histidine kinase [Methylotenera sp.
           301]
 gi|297257909|gb|ADI29754.1| integral membrane sensor hybrid histidine kinase [Methylotenera sp.
           301]
          Length = 1148

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 74/266 (27%), Positives = 140/266 (52%), Gaps = 6/266 (2%)

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
            + +   +    L   +I   ++   +L  A+++A++ +  KS ++  +SHE+RTPL +I
Sbjct: 654 RVAQEESNRQTGLLQREIELHQKTDAELQLARQVADQANQAKSRYITGISHELRTPLNSI 713

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +G+++++ N    P      ++    I RSG  +L ++   LDI++IE GK+    +P+ 
Sbjct: 714 LGYAQLLDNDTSIP---DSRLQAIRVIRRSGEHLLSLIEGTLDIARIEGGKLTFDIKPLR 770

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSG 722
             E + + +S+ +L A  K I       + +P  + AD + + QI +NIL NA+ FT  G
Sbjct: 771 FPEFIKQIVSMFELQARNKGINFAYEVTSELPKMVRADQKRLSQILINILGNAVKFTQHG 830

Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
           G ++    + + E V + + DTG G+  +E++   +PF +   +   R  GTGLGL ++K
Sbjct: 831 G-VVFRVQY-ARELVQIEIEDTGPGIQTHEIDSVFEPFARGSAAANDRIGGTGLGLTISK 888

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIF 808
            +     G+  + S   KGT+ +I  
Sbjct: 889 LLTQLMGGEISVNSVVGKGTIFKIKL 914


>gi|116622957|ref|YP_825113.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116226119|gb|ABJ84828.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 686

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 85/488 (17%), Positives = 172/488 (35%), Gaps = 49/488 (10%)

Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
           SF   T   +   +           +  ++       +  Y        A  RL  +   
Sbjct: 75  SFCAHTILSNDVMVVPDAAKDPRFASAPVTVGGLR--IRFYAGAPLITPAGYRLGALAVM 132

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME-------IEVMQLCSILE 459
                     P    ++    +   G+   D++ R    +             +  + +E
Sbjct: 133 DTR-----PRPALTEDETATLVDLAGLVMHDLNGRQELARARNLPGMAAEAEAKFTAFME 187

Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL 519
           + S  I  IN  G I   N    +LFGY  E+++ +   + L  +       +  +  + 
Sbjct: 188 SASQAIIAINHHGEIEVVNHKAEELFGYVREEMVGQRLELLLPDSLRHAHAAHRKDFFAH 247

Query: 520 DLRQT--LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT--MHDISEWKQEKNKLSHAK 575
              +   +     G  K      + I +  +   S       + DI+   + + +L  ++
Sbjct: 248 PHARPMGIGMDLAGQRKSGHQFPVEISLNHVEVGSRALAFAFITDITARLRLEQQLRQSQ 307

Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
           K+              V+H+    LT I G+S +  +       +    E    I+++  
Sbjct: 308 KL-----EAVGQLAGGVAHDFNNLLTVIHGYSSMSLDSL---AADSPLREPIEEIEKAAV 359

Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695
               +   LL  S+    +  +  + ++L+  +S    ++ +    + + +       + 
Sbjct: 360 SAASLTRQLLAFSR----RNVVRPQILNLNTVISHMQKML-VRVLGEDVELIMEMGAALD 414

Query: 696 RILADLRSVKQIALNILSNAIHFTPSGGQIIISTT--------------HTSNEEVILRV 741
            I AD   ++QI +N+  N+    P GG++I+ T                 +    +L V
Sbjct: 415 TIRADPGLIEQILMNLAVNSRDAMPHGGKLILETANLYLDKEYAGAHLAVKTGPHAMLAV 474

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            DTG GM+     +  +PF         +G+GTGLGL     +V    G  +++S P KG
Sbjct: 475 TDTGSGMSEEIRSRIFEPFFTTKP----QGQGTGLGLATVYGIVQQMEGSIWVYSEPGKG 530

Query: 802 TLIEIIFP 809
           T  +I+FP
Sbjct: 531 TTFKILFP 538


>gi|70730559|ref|YP_260300.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68344858|gb|AAY92464.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens
           Pf-5]
          Length = 1059

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 76/379 (20%), Positives = 161/379 (42%), Gaps = 35/379 (9%)

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILRK 495
            V  +  ++ +         +++    G+ +++R+   ++  NR   +            
Sbjct: 345 VVPAQRAQQCLNESEDFNRVVIDTVPSGLCVVSRDNLQVILQNRQAEQW----------- 393

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555
                            L+ +        ++        + + L +  +  +        
Sbjct: 394 -----------QGTAQLLSRLAQDR--SLIDGGETSLDIDGRYLQVEFVSTRYQRQDVLV 440

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
            T +D++   ++   L  A++ A+  ++ K+ FLA +SHEIRTPL  ++G  E++   R 
Sbjct: 441 CTFNDVTRHVEDARALDRARRSADAANAAKTLFLATMSHEIRTPLYGVLGTLELLGLTRL 500

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
               + R  +Y   I RS + +  +++D+LD+S+IE+G+M++        + + + +   
Sbjct: 501 ----DSRQSDYLQTIQRSSSTLFQLISDVLDVSRIEAGQMSIDPLEFCPLDMLEDVLHAH 556

Query: 676 QLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQI-IISTTHTS 733
              A  + +L       N+P  +L D   + QI  N+LSNAI FT SG  +  +      
Sbjct: 557 AASAQRRGLLFYACIDPNLPDLLLGDAARISQILNNLLSNAIKFTESGRVVLRVRLLELR 616

Query: 734 NEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
           +++  +   V DTG+G++  +  +   PF Q+ ++      G GLGL + + +     G+
Sbjct: 617 DQQARIEWQVTDTGIGISAQQQPQLFVPFFQVRDASNEA--GAGLGLAICERLCQMMGGQ 674

Query: 792 FYIFSTPAKGTLIEIIFPL 810
             + S P  G+   +   L
Sbjct: 675 MQVTSEPGLGSSFSLRLTL 693


>gi|138894461|ref|YP_001124914.1| two component system histidine kinase [Geobacillus
           thermodenitrificans NG80-2]
 gi|134265974|gb|ABO66169.1| Two component system histidine kinase [Geobacillus
           thermodenitrificans NG80-2]
          Length = 354

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 70/331 (21%), Positives = 134/331 (40%), Gaps = 13/331 (3%)

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL---DLRQTLEKITLGSTKEEKLLSLRI 543
           +     + +            ++   ++ I       +  +     L   +      L  
Sbjct: 25  WSAAYFITEAIYTRFAWQPHPLVRQIISSIFGFLLFGMTMSAIGPFLRKRERVFWHHLID 84

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKL----SHAKKIAEKESSHKSDFLARVSHEIRTP 599
            I ++           D         +L    +      +     + +F++ VSHEI +P
Sbjct: 85  AINRIAKGDFRVNLQVDWGGRHHPFAELVTRINDMAANLQAMEDMRQEFISNVSHEIGSP 144

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           LT+I GF+  +KN+    L   + + Y + I+     +  +  +LL ++ ++S +  LH 
Sbjct: 145 LTSIRGFARALKNEN---LSQEQRMHYLDIIETECVRLSKLSENLLRLAMLDSERYPLHP 201

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719
               LD  +   I   +    EK + +          I AD   + Q+ LN++ NAI FT
Sbjct: 202 TSYRLDTQLQTLILHCEPQWAEKDVDMCAVMEK--VSITADEDLLSQVWLNLIHNAIKFT 259

Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
           P GG I +       E+ I+ + DTG G+  ++  +  + F ++  S+     G+GLGL 
Sbjct: 260 PKGGTITVQVQRR-GEQAIVTISDTGPGIPKHDQPRIFERFYKVDKSRHRAAGGSGLGLA 318

Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           +AK +VD + G   + S P +G    +  P+
Sbjct: 319 IAKQIVDMHHGTISVQSEPGEGATFTVELPI 349


>gi|120601366|ref|YP_965766.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfovibrio vulgaris DP4]
 gi|120561595|gb|ABM27339.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           vulgaris DP4]
          Length = 764

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 93/600 (15%), Positives = 190/600 (31%), Gaps = 56/600 (9%)

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN-SKESFEYLSHRNHPSLSA 313
                   + +  S+P  E  H          +     +   +             S   
Sbjct: 182 DRIAQGDFSYDVRSIPHVELSHIAENFARMAHEVELRERELHAINDRLQQEIAVRRSAEE 241

Query: 314 YFDEGENLTPETVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                E      V       + +       Y  P +  +  Y   + +  A         
Sbjct: 242 ALRTSEERYALAVRGTSDGIWDWDLRTGDVYFAPRWKSIIGYDDHE-LPNAISTWKDNVH 300

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
           P              R +        R+   +    +   +        ++    +   G
Sbjct: 301 PDDMPRVIEANESCMRREVPEFQVEYRM---RHKDGSWCWVLGRGAAIWDEQGNALRMAG 357

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
              +    +  ++ +      L +++ A    I  +++ G +   N   +   G   E +
Sbjct: 358 AHTDITGWKATEQALREAKNTLDNVINAMPSTIVGLDQHGRVTLWNLTAANDTGLAREQV 417

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
           +       L     + ++  +T  ++      ++K++L     ++   + I       + 
Sbjct: 418 MGHGLEEVLP--RFAFLSPDVTRCMNEGRTIAMQKVSLPQGVGQRHYDIVIFPVVTRGAY 475

Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
              L + D++   + +  +   +K+            A ++HEI  PL  I+  ++ I  
Sbjct: 476 GAVLRIDDVTARMRIEEIMVQTEKML-----SVGGLAAGMAHEINNPLGGILQGAQNIMR 530

Query: 613 QRFGPLGNPR---------------------YIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           +    L   R                      I +   I  SG     IV+++L+     
Sbjct: 531 RIDPTLPANRKAAEESGCDLENLHTYMTSRGIIRFLEGIRESGQRAASIVSNMLEF---- 586

Query: 652 SGKMNLHFEPVSLDEAVSEAISL------VQLYANEKRILIRTSFANNIPRILADLRSVK 705
           S   +  +  V++   V   + L      ++   + + I I   FA ++P +L     ++
Sbjct: 587 SRSSDSRWSRVAIPHLVERTLELAANDYDLKKKYDFRHIEIVQDFAPDLPEVLCMPTEIE 646

Query: 706 QIALNILSNAIHFTPSGGQ------IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKP 759
           Q+ LN+  NA    P  GQ      I +       + + L V D G GM      +  +P
Sbjct: 647 QVLLNLFKNAAQAMPERGQRADAPRITVRGALE-GDRIRLDVADNGPGMVEDVRRRVFEP 705

Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMV-DANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
           F    N     GEGTGLGL ++  ++   + G F + S P  GT+  I  PL     P +
Sbjct: 706 FYTTKN----VGEGTGLGLSVSYFIITTNHGGSFSVQSEPGSGTMFSIRLPLTQPGMPRN 761



 Score = 38.9 bits (89), Expect = 3.6,   Method: Composition-based stats.
 Identities = 13/236 (5%), Positives = 46/236 (19%), Gaps = 12/236 (5%)

Query: 96  KEISEELPKTIGNYAFKM--IGMRLCDVSDILHIDPNNHIGDLLKRQN--TWYGKTTLWP 151
              +      IG    ++        D      +       +   R+    +  +  +  
Sbjct: 271 VYFAPRWKSIIGYDDHELPNAISTWKDNVHPDDMPRVIEANESCMRREVPEFQVEYRMRH 330

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
            +G+  +  +      I+         R  G               +       ++    
Sbjct: 331 KDGS--WCWVLGRGAAIWDEQGN--ALRMAGAHTDITGWKATEQALREAKNTLDNVINAM 386

Query: 212 KGHSSVEKEKYDIFSQQ--SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
                   +   +      +       + +V               +       +E  ++
Sbjct: 387 PSTIVGLDQHGRVTLWNLTAANDTGLAREQVMGHGLEEVLPRFAFLSPDVTRCMNEGRTI 446

Query: 270 PEQEDFHTINLNQYTKKQYFGTL--QNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
             Q+      + Q         +  +                 +     + E +  
Sbjct: 447 AMQKVSLPQGVGQRHYDIVIFPVVTRGAYGAVLRIDDVTARMRIEEIMVQTEKMLS 502


>gi|302187407|ref|ZP_07264080.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase, HAMP region:histidine
           [Pseudomonas syringae pv. syringae 642]
          Length = 645

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 72/283 (25%), Positives = 128/283 (45%), Gaps = 20/283 (7%)

Query: 544 IIKKLPFSSCYSLTMHDIS-----------EWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
               +   +        I+           E ++   +L H ++ AE+ +  KSDFLA +
Sbjct: 215 TPMPVSDDAELGALARHINNLAENLHRTSLEQQRSVAQLIHTREEAEQANRAKSDFLAMM 274

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHE+RTP+  ++G  ++++             EYA     S   +L ++ND+LD S+IE 
Sbjct: 275 SHELRTPMNGVLGMLQLLETTHMTH----EQSEYATLATESTEHLLRVINDILDFSRIER 330

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP--RILADLRSVKQIALN 710
             + +   P +L E VS +       A ++ +L+       +    ++ D   ++QI +N
Sbjct: 331 DALQMEGIPFNLAELVSASTHAFNHSAAQRNLLLELHIQPGLEGMNVIGDPTRIRQILVN 390

Query: 711 ILSNAIHFTPSGGQ-IIISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQ 767
           ++ NA+ FT  G   + +       E +     V+D+G+G+    LE     F Q  +S 
Sbjct: 391 LIGNALKFTEQGKVCVEVRWAMLDAERLHFTCAVQDSGIGIDAERLESMFDAFKQADSSI 450

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             R  GTGLGLP+A+ + +   G  +  S    G+L  +  PL
Sbjct: 451 SRRYGGTGLGLPIARTLAERMGGTLHAESEEGSGSLFTLQIPL 493


>gi|304310584|ref|YP_003810182.1| Sensor kinase GacS [gamma proteobacterium HdN1]
 gi|301796317|emb|CBL44525.1| Sensor kinase GacS [gamma proteobacterium HdN1]
          Length = 994

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 80/244 (32%), Positives = 128/244 (52%), Gaps = 10/244 (4%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  A+K A + S  KS+FLA +SHEIRTPL A+IGF+ ++              +Y   
Sbjct: 297 ELDLARKEAVEASRIKSEFLANISHEIRTPLNAVIGFTTLLLKSDIKTF----QYDYLET 352

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL-IRT 688
           I +S   +L I+ND+LD SKIE+GK++L   P +    V + ++++   A EK +  I  
Sbjct: 353 ILKSSEGLLAIINDVLDFSKIEAGKLSLESTPFNFQNLVEDVLTMLAPMAYEKHLEQISL 412

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDT 744
            +++   +I+ D   +KQI  N+++NAI FT  G ++++      +      + + V DT
Sbjct: 413 YYSDVPQQIIGDPLRLKQILTNLVNNAIKFTSQG-EVVVRVMLEDSRNHLCVIKVSVTDT 471

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G+T  +       F Q  NS   R  GTGLGL ++K +V+   G+  I S    G   
Sbjct: 472 GIGLTKEQQSALFHAFQQADNSAARRHSGTGLGLVISKHLVEQMRGQIGIESEIGAGATF 531

Query: 805 EIIF 808
              F
Sbjct: 532 WFTF 535


>gi|329890253|ref|ZP_08268596.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family
           protein [Brevundimonas diminuta ATCC 11568]
 gi|328845554|gb|EGF95118.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family
           protein [Brevundimonas diminuta ATCC 11568]
          Length = 839

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 109/658 (16%), Positives = 219/658 (33%), Gaps = 56/658 (8%)

Query: 172 NREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231
             +F     +      +           + +  +      +G  SVE+E           
Sbjct: 81  QGDFERAAIWNKRLETQARAQNDQRYLAIARLNALTIRYDQGDLSVEEEMARTARTSRDW 140

Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGT 291
             +    ++S+L    A  D     E   LLT+ E+ +P  + +         +    G 
Sbjct: 141 FVMAHAARLSAL----ALMDQDRVGEGLRLLTTVEAEIPAHDPYAATARAGVWEMTGMGL 196

Query: 292 LQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLL 351
           ++ +          R     S       +      +   +   V    N      +   L
Sbjct: 197 MKLSDVAGAAAAFRRFEIDDSNPEYPRPD-FDSLYNLARMAIQVGDLPNAELYYAAHHRL 255

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSL 411
           ++  +++ +                D      V   R D   +      H    + +  L
Sbjct: 256 SQRANLESL-------------SAYDAALCAAVADARRDSRGVLDCLAPHEALIDGKAFL 302

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE 471
           A+  +P     +                          ++ +L    +   +G   ++  
Sbjct: 303 ALDILPARGVARARLGDLAG---------------ARRDLERLR---DLAPEG--AVDPT 342

Query: 472 GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
             +L        LFG        +    +  +    +   +   I  +      +     
Sbjct: 343 ERLLE----AELLFGSGRPREGFEILREYQRERDLHLSRRFSAGIHQVTGDMQQQLAERR 398

Query: 532 STKEEKLLSLRIIIKKLPFSSCYSLTMHDISE--------WKQEKNKLSHAKKIAEKESS 583
              E    + ++    +   +                    +++  +L  A+  AE  + 
Sbjct: 399 RQLETARANTQLQQAVIRGQNWILAISLVFVLSVLLVLLWQRRQSRRLKKAQLHAEAANR 458

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
            KS+FLA +SHEIRTPL  ++  +EV+  +        R  E  + I  SG  +  +++D
Sbjct: 459 AKSEFLANMSHEIRTPLNGVVAMAEVLTTRDL----PERDRELVDIIRSSGVTLERLLSD 514

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLR 702
           +LD+++IESG++ +   P  L++   + ++L    A  K + +R  +   +PR ++ D  
Sbjct: 515 ILDVARIESGQVAIDPAPFDLEQVTRDVVALWAPLALGKGVELRLDYDPTLPRLVIGDAV 574

Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
            ++Q+  N++SNA+ FT  G  + +       E V   V DTG+G       +    F Q
Sbjct: 575 RLRQVLTNLISNALKFTQEGA-VTLEAVQGEGERVRFTVTDTGIGFDAEFKSRIFHRFQQ 633

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820
              S   +  G+GLGL ++  +V    G+    S P  G       PL       D +
Sbjct: 634 EDGSITRQFGGSGLGLAISDDLVRLMGGELDCESPPQGGARFWFDLPLPPVEGAEDEL 691


>gi|17987907|ref|NP_540541.1| phosphate regulon sensor protein PHOR [Brucella melitensis bv. 1
           str. 16M]
 gi|17983642|gb|AAL52805.1| phosphate regulon sensor protein phor [Brucella melitensis bv. 1
           str. 16M]
          Length = 412

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 61/372 (16%), Positives = 136/372 (36%), Gaps = 32/372 (8%)

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
            +    +   +L  +L   +D + + +    +   N A  + F         +  T    
Sbjct: 56  AREMAAVSGERLADLL---TDPMIVFDHTATVRFANVAALEAFQ------SLQNGTALYL 106

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHD 560
           +     M   +  +++    +            ++     +   +        + L   D
Sbjct: 107 RFRAPEMLALIQGVIADGEPR--NIEYFERVPIDRWYKAMVKALRDAEGKPELFVLIFRD 164

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
            SE ++                  +SDF+A  SHE+RTPL ++ GF E ++         
Sbjct: 165 QSETRRI--------------DRMRSDFIANASHELRTPLASLRGFIETLQG--PARNDA 208

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
                + + + +    +  +++DLL +S++E        E V +   ++     +   A 
Sbjct: 209 AARDRFLDIMQKQAERMSRLIDDLLSLSRLEMRAHLAVNESVDVAATLAHVADTLTPLAA 268

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EV 737
              + I      +   ++     + Q+  N++ NA  +   G ++II  +        EV
Sbjct: 269 GLGVTIERHLPEHPVHVMGARDELIQVFQNLVENACKYGQEGKRVIIRLSEEDTGNATEV 328

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
           +  ++D G G+    L +  + F +I        +GTGLGL + K ++  + G+  + S 
Sbjct: 329 VASIQDFGPGIAAEHLPRLTERFYRIDVETSRAHKGTGLGLAIVKHILARHRGRLVVRSQ 388

Query: 798 PAKGTLIEIIFP 809
             +G+   +  P
Sbjct: 389 LGEGSTFMVRLP 400


>gi|317051714|ref|YP_004112830.1| PAS sensor protein [Desulfurispirillum indicum S5]
 gi|316946798|gb|ADU66274.1| PAS sensor protein [Desulfurispirillum indicum S5]
          Length = 997

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 92/662 (13%), Positives = 218/662 (32%), Gaps = 61/662 (9%)

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTE 245
           R         +R ++++  L E       V   +            LR    ++V + + 
Sbjct: 341 RRMKLITQRLERSEEQYRLLAENATDVIWVMDMQGKFTYISPSVFQLRGYTPDEVMAQSF 400

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHT--------INLNQYTKKQYFGTLQNNSK 297
                    +     L+ + E +   QE             + +    +     + + + 
Sbjct: 401 DEVVCAGSREVVLRGLMLANELAASGQERHPVYEYVEQPCRDGSTVWTEVLAHLMYDANA 460

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKS 356
           ++   L      +     ++        V++ P+   + +  G + Y NP F  +T + +
Sbjct: 461 KAVGILGVSRDITQRKRTEDNLRKLSLAVEQAPVSIIITNAVGQIEYVNPKFEEVTGFSA 520

Query: 357 VDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
            D +    G +  +   +   +   + +    +  +  +   R    +            
Sbjct: 521 SDVL----GRNPRILQSQSHPDTFYRQMWQTIASGSQWSGEIRN---RRKNGELYWEQAT 573

Query: 417 PFEKANQFPENMPQNGIEPEDVDTR---------INKRKMEIEVM---------QLCSIL 458
                +         GI+ +    +           +  +++EV          Q   + 
Sbjct: 574 ISSIRDGKGAITHYVGIKEDITIRKAHEQMQQNFRQELALQVEVEVARNLESQKQFQVLF 633

Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF--LEQNTPSVMNHYLTEI 516
           E   +GI I+N +G  +  N A +++  Y  ++++         +      +    L   
Sbjct: 634 EQNPEGILILNDDGAFVKCNPAAARMLEYEPDEMIGTLIWSLQSVRAPLSPLQAAGLARP 693

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKK 576
           +        E + +  +  E L+ ++++               DI+E KQ + +    + 
Sbjct: 694 VHAAEPARFEWLLVARSGREVLVDVQMVPFHYDGKPQLLCIWRDITELKQLQQERDLQQA 753

Query: 577 I--AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ-RFGPLGNPRYIEYANYIDRS 633
           I   + + +     +  + H+   PL  +    + ++++     L      E    I + 
Sbjct: 754 IVVQQAKMAELGSMMGAIVHQWHQPLNNVSLLIQDMQDRYHSDELDADILDETVERILKQ 813

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693
              +   ++D  +  K      +   E  S+ + V E + L++    ++ + +       
Sbjct: 814 FQFMSRTLDDFRNFFK-----PSRQVESFSIVQCVEEVVDLMKPQLQKQGLRVEIGGDRG 868

Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQ----IIISTTHTSNEEVILRVRDTGVGMT 749
           + +++      KQ+ LN+LSNA       G     + I    +  + V+L   D   G+ 
Sbjct: 869 V-KVMGYASEFKQVILNLLSNARDAHGVHGTNDPYVNIQLEWSRGKPVLL-FSDNAGGIH 926

Query: 750 NYELE-KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEII 807
              L  K  +PF     +      GTG+GL L++ ++    G   + S  P  G    I 
Sbjct: 927 PDLLPEKLFQPF-----TSTRGEHGTGIGLSLSRLIMKKMGGTLRVTSNAP--GACFRIE 979

Query: 808 FP 809
           FP
Sbjct: 980 FP 981



 Score = 86.6 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/406 (10%), Positives = 114/406 (28%), Gaps = 53/406 (13%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV-------SDILHIDPNNHIGDLLK 138
            W +D  G    IS  + +  G    +++     +V         +  +   N +    +
Sbjct: 368 IWVMDMQGKFTYISPSVFQLRGYTPDEVMAQSFDEVVCAGSREVVLRGLMLANELAASGQ 427

Query: 139 RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
            ++  Y        +G+   V  ++ A  +Y  N +  G  G  +              +
Sbjct: 428 ERHPVYEYVEQPCRDGST--VWTEVLAHLMYDANAKAVGILG--VSRDITQRKRTEDNLR 483

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPP--HLRMKNKVSSLTEYYAHKDDVLKT 256
           +L              ++V + +Y     +         +  +   + +  +H D   + 
Sbjct: 484 KLSLAVEQAPVSIIITNAVGQIEYVNPKFEEVTGFSASDVLGRNPRILQSQSHPDTFYRQ 543

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
               + +   S    +      N   Y ++    ++++       Y+  +   ++    +
Sbjct: 544 MWQTIASG--SQWSGEIRNRRKNGELYWEQATISSIRDGKGAITHYVGIKEDITIRKAHE 601

Query: 317 ----------------------EGENLTPETVDKCPIPFFV-YSHGNLFYANPSFLLLTK 353
                                 E +       ++ P    +    G     NP+   + +
Sbjct: 602 QMQQNFRQELALQVEVEVARNLESQKQFQVLFEQNPEGILILNDDGAFVKCNPAAARMLE 661

Query: 354 YKSVDDIEIAGG--------LSTL----LDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401
           Y+  + I             LS L    L  P  +   A    +L       +    ++ 
Sbjct: 662 YEPDEMIGTLIWSLQSVRAPLSPLQAAGLARPVHAAEPARFEWLLVARSGREVLVDVQMV 721

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
              ++ +  L   +    +  Q  +      ++   V  +    ++
Sbjct: 722 PFHYDGKPQLLCIWRDITELKQLQQER---DLQQAIVVQQAKMAEL 764


>gi|156977333|ref|YP_001448239.1| histidine kinase [Vibrio harveyi ATCC BAA-1116]
 gi|156528927|gb|ABU74012.1| hypothetical protein VIBHAR_06119 [Vibrio harveyi ATCC BAA-1116]
          Length = 985

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 80/261 (30%), Positives = 131/261 (50%), Gaps = 10/261 (3%)

Query: 564 WKQEKNKLSHA--KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
            +  +  L+HA  +K AE+ S  KS FLA +SHEIRTP+  ++G + ++ +       NP
Sbjct: 447 RRLNEEVLNHAKARKQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLIDSGL----NP 502

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
               YA  I+RSG  +L I+ND+LD SKIE+G + +      L + V +   L+   A E
Sbjct: 503 MQKRYAEIINRSGKTLLAILNDVLDYSKIEAGHLEIRSLGFDLHQMVEDTFQLMNGKAQE 562

Query: 682 KRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVIL 739
           K++L      +++ R    D+  + Q+  N++ NAI FT  G   I +S       +V+ 
Sbjct: 563 KKLLFSYHIESDVGRYWKGDVTRINQVLSNLVGNAIKFTEEGEIDIYVSLNPEDESQVLF 622

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V DTG+G+   + +     F Q       +  GTGLGL +++ ++ A  G   + S   
Sbjct: 623 EVSDTGIGIAKKDKKTLFDAFTQAEGGMN-QTGGTGLGLAISRRIIQAMGGCLDVDSEEG 681

Query: 800 KGTLIEIIFPLYDTSHPHDCI 820
            G+      PL + S P + +
Sbjct: 682 HGSRFWFSIPL-EESEPVETV 701


>gi|295680798|ref|YP_003609372.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1002]
 gi|295440693|gb|ADG19861.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1002]
          Length = 794

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 81/500 (16%), Positives = 170/500 (34%), Gaps = 42/500 (8%)

Query: 338 HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397
            G +   N     +  + + + I                  +A   + + RS        
Sbjct: 44  EGIIRTWNVGGEKIHGFLADEVIGKR--FDIFHTQDDRDKGSAAALLDIARSTGRS---E 98

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
           +    I+ +     A   +     +     +    I  +  D +     +     +   +
Sbjct: 99  SEGWRIRKDGSRFWA-NVVITALTDDTGHVLGFGKIVRDMTDKKTVHDAVVESERRFRML 157

Query: 458 LEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           +   +D  I +++ +GI+ + N    ++ GY  E+I+    + F      +     L  +
Sbjct: 158 VNGVTDYAIFMLSPDGIVTNWNAGARRIKGYSAEEIIGSHLSRFYTPEDAAAGLP-LRGL 216

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNKLS 572
                    E       K+ +     ++I  +               DI+E  +    L 
Sbjct: 217 SIAAREGRFEAEGWRVRKDGERFWAHVVIDAIRDEDGTLAGFAKITRDITERMEASRMLE 276

Query: 573 HAKKIAEKES--SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
             +K   +             V+H+    L  + G  E++ ++ +    +    E     
Sbjct: 277 DTRKALFQSQKMEAVGKLTGGVAHDFNNVLQILRGNLELLDSRHYR---DEWTRERVAKA 333

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
             +      + + LL   +    +  L    ++L  A+     L++  A ++ I + T  
Sbjct: 334 ITAVERGSKLASQLLAFGR----RQPLQPVVINLASALRGMDDLLR-RALDETIDVETVV 388

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT--------------HTSNEE 736
           A  +   L D+  ++ + LN+  NA      GG++ +  +                + + 
Sbjct: 389 AGGLWNTLVDIHQLENVILNLAINARDAMAEGGKLTMELSNAMLDDEYVASVPDIQAGQY 448

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           V+L V DTG GM+   +++A  PF          G GTGLGL +A   V  + G   I+S
Sbjct: 449 VLLAVTDTGTGMSPDVVDRAFDPFFTTKP----EGRGTGLGLSMAYGFVKQSGGHIKIYS 504

Query: 797 TPAKGTLIEIIFPLYDTSHP 816
               GT +++  P   +S P
Sbjct: 505 EVGHGTTVKLYLP--RSSRP 522



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/362 (11%), Positives = 102/362 (28%), Gaps = 20/362 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK-RQNTWYGKT 147
           +   G ++  +    K  G  A ++IG R  D+              LL   ++T   ++
Sbjct: 41  LSPEGIIRTWNVGGEKIHGFLADEVIGKRF-DIFHTQDDRDKGSAAALLDIARSTGRSES 99

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
             W I         ++    +        GF    IV                +++F  L
Sbjct: 100 EGWRIRKDGSRFWANVVITALTDDTGHVLGFGK--IVRDMTDKKTVHDAVVESERRFRML 157

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
                 ++        I +  +            +        ++++ +      T E++
Sbjct: 158 VNGVTDYAIFMLSPDGIVTNWNA----------GARRIKGYSAEEIIGSHLSRFYTPEDA 207

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
           +        +I   +   +     ++ + +  + ++                 +T +  +
Sbjct: 208 AAGLPLRGLSIAAREGRFEAEGWRVRKDGERFWAHVVIDAIRDEDGTLAGFAKITRDITE 267

Query: 328 KCPIPFFVYSHGNLFYANP---SFLLLTKYKSVD---DIEIAGGLSTLLDAPKLSDNNAI 381
           +      +       + +    +   LT   + D    ++I  G   LLD+    D    
Sbjct: 268 RMEASRMLEDTRKALFQSQKMEAVGKLTGGVAHDFNNVLQILRGNLELLDSRHYRDEWTR 327

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
           + V    +     +  A        R+    +            + + +   E  DV+T 
Sbjct: 328 ERVAKAITAVERGSKLASQLLAFGRRQPLQPVVINLASALRGMDDLLRRALDETIDVETV 387

Query: 442 IN 443
           + 
Sbjct: 388 VA 389



 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/229 (8%), Positives = 53/229 (23%), Gaps = 15/229 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + +   G +   +    +  G  A ++IG  L              +  L         
Sbjct: 166 IFMLSPDGIVTNWNAGARRIKGYSAEEIIGSHLSRFYTPEDAAAGLPLRGLSIAAREGRF 225

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +   W +          +    I   +   +GF       + R   +     + L+    
Sbjct: 226 EAEGWRVRKDGERFWAHVVIDAIRDEDGTLAGF-----AKITRDITERMEASRMLEDTRK 280

Query: 206 HLHEIKKGHSSV----------EKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK 255
            L + +K  +                  +            +++ +      A       
Sbjct: 281 ALFQSQKMEAVGKLTGGVAHDFNNVLQILRGNLELLDSRHYRDEWTRERVAKAITAVERG 340

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
           ++    L +     P Q     +               + + +    ++
Sbjct: 341 SKLASQLLAFGRRQPLQPVVINLASALRGMDDLLRRALDETIDVETVVA 389



 Score = 58.1 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 54/139 (38%), Gaps = 10/139 (7%)

Query: 458 LEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV--MNHYLT 514
           +++  D  +  ++ EGII + N    K+ G+  ++++ K F +F  Q+          L 
Sbjct: 30  IDSVIDYAVIGLSPEGIIRTWNVGGEKIHGFLADEVIGKRFDIFHTQDDRDKGSAAALLD 89

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL----TMHDISEWKQEKNK 570
              S       E       K+       ++I  L   + + L     + D+++ K   + 
Sbjct: 90  IARSTGRS---ESEGWRIRKDGSRFWANVVITALTDDTGHVLGFGKIVRDMTDKKTVHDA 146

Query: 571 LSHAKKIAEKESSHKSDFL 589
           +  +++      +  +D+ 
Sbjct: 147 VVESERRFRMLVNGVTDYA 165


>gi|332142599|ref|YP_004428337.1| Response regulator receiver:ATP-binding region, ATPase-like protein
           [Alteromonas macleodii str. 'Deep ecotype']
 gi|327552621|gb|AEA99339.1| Response regulator receiver:ATP-binding region, ATPase-like protein
           [Alteromonas macleodii str. 'Deep ecotype']
          Length = 891

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 85/255 (33%), Positives = 135/255 (52%), Gaps = 11/255 (4%)

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           S+ +     L+ +K  AEK ++ KS FLA +SHEIRTP+  IIG  E+ + Q   P    
Sbjct: 370 SQLEGLNKALTESKIKAEKATASKSIFLANMSHEIRTPMNGIIGLIELAQQQELSPT--- 426

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
               Y +    SG +++ ++ND+LD SKIE+GK+ +     SL       I+++ L A E
Sbjct: 427 -VRGYLDKAAYSGQILISVINDILDFSKIEAGKLKIEEVSFSLHSLFDNLIAVIALRAKE 485

Query: 682 KRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIS---TTHTSNEEV 737
           K + +  +    +P  ++ D   + QI +NI +NA+ FT  G +I I+   T +     +
Sbjct: 486 KNLSVHFNVNPMLPPQVIGDPLRIAQIIMNIGNNAVKFTEQG-RIEIAFDGTLNEKGNRL 544

Query: 738 IL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            L  R+ D+G+GM+  +L+K  KPF Q   S   +  GTGLGL +   + +   G+    
Sbjct: 545 NLTMRITDSGIGMSKAQLDKIFKPFTQADGSTNRKYGGTGLGLAIVSQLTELMNGRIDAS 604

Query: 796 STPAKGTLIEIIFPL 810
           ST  KG+  E+  PL
Sbjct: 605 STMGKGSTFEVNLPL 619


>gi|222083203|ref|YP_002542606.1| multi-sensor hybrid histidine kinase [Agrobacterium vitis S4]
 gi|221738583|gb|ACM39421.1| multi-sensor hybrid histidine kinase [Agrobacterium vitis S4]
          Length = 1145

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 100/620 (16%), Positives = 212/620 (34%), Gaps = 57/620 (9%)

Query: 195 ALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVL 254
            L + L    +          + ++ K+D+ + ++    +R                  +
Sbjct: 132 ELDETLRTYRTAGPAAALALVNTDRGKFDMDAIRTLVSEIRNAETDVRTQRVAEMNRAYV 191

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
                 LLT     +        +      +K      +         +      S    
Sbjct: 192 VAFATSLLTGFLGIVLTLVIGGLMRRATLARKNEQWQQEAQVGLGPVVIG---EQSTQEL 248

Query: 315 FDEGENLTPETVDKCPIPFFVYSHGNL----FYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
                      +       +V           +  P+  ++   +  ++ +   G     
Sbjct: 249 GQNILRFLTSYLGAVAGSLYVRDGARYALTAVHGVPAGTVI--PERFEESDSLFGHVLRD 306

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
             P          +    S          L     + E                P     
Sbjct: 307 HRPVTVGELPDGYISFGSSLGQQKPRYLTLAPAMVDGEVKAVFELGFLH-----PVGDHV 361

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490
             +     +T     +      QL ++L                                
Sbjct: 362 LALLERSSNTIAAAIRSAEFRTQLRTLL-------------------------------H 390

Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
           +  R+   + ++     V N  L E                    ++ + L     +L  
Sbjct: 391 ETQRQTEELQVQGEELRVSNEELEEQSRALKESQARLE-------QQQVELEQTNSQLEE 443

Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
            +       D  + ++  + +    +  E+ S +KSDFLA +SHE+RTPL + +  ++++
Sbjct: 444 QAQELERQKD--DLEKANDAVRLQAQEVERASRYKSDFLANMSHELRTPLNSSLILAKLL 501

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
            +     L     +++A  I  SGN +L+++ND+LD+SKIE+G + +  EPV+++  V  
Sbjct: 502 ADNADENLTAE-QVKFAQTIQSSGNDLLNLINDILDLSKIEAGHVEVSPEPVAINRTVDG 560

Query: 671 AISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
              L    A +K + +    A ++P ++  D + ++Q+  N+L+NA+ FT  G Q+ +  
Sbjct: 561 LRQLFDPLAAQKGLNLSIEVAPDVPSVIETDPQRLEQVLKNLLANAVKFTAEG-QVSLLV 619

Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
               + ++ + V DTG+G+   +     + F Q  ++   +  GTGLGL +++ +V    
Sbjct: 620 RPAGDAQIAISVVDTGIGIAEDQQRNIFEAFHQADSTISRKFGGTGLGLSISRELVRLLG 679

Query: 790 GKFYIFSTPAKGTLIEIIFP 809
           G+ ++ S P  G+   +I P
Sbjct: 680 GRMHLQSRPGTGSTFTVIIP 699


>gi|218530776|ref|YP_002421592.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium
           chloromethanicum CM4]
 gi|218523079|gb|ACK83664.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium
           chloromethanicum CM4]
          Length = 903

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 97/667 (14%), Positives = 206/667 (30%), Gaps = 86/667 (12%)

Query: 190 DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH 249
            +        ++     ++  +        + +              +   +      A 
Sbjct: 92  VDAAPEGKLVVEDNGRMIYANEAYMRLAGGDSFSNLRSIERIFVGAPEVSEAVYRLAQAS 151

Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
           +DD    E+  +      +      ++ I +    + +    L       +      +  
Sbjct: 152 RDDRAYAEEIRMSPPPGGAADRDFAWYRIAVRPIPRHRGSAAL-------WTVSDITHER 204

Query: 310 SLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYK-------SVDDIE 361
                  +      + +D  P  F  + + G++ Y N +      Y         +  +E
Sbjct: 205 ERQENVFQELQHAIDYLDHAPAGFLSIDAAGSIVYMNATLASWLGYDLATVGSGGLKLLE 264

Query: 362 IAGGLSTLLDAPKLSDNNAIKP--VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
           IA G   L  +P L          + L R +   +                  +      
Sbjct: 265 IAPGADMLTASPGLPGEVRTDRYDIDLRRRNGQPLPTR---------------LYHRVAY 309

Query: 420 KANQFPENMPQNGIEP-EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
             +  P       +      D    +R  E+ + +    L  +   IA ++R+G ++  N
Sbjct: 310 GQDGAPGPSRTFVLNRSAGSDADEPQRAAEVRLARF---LNNSPIAIATLDRDGRVIRAN 366

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE-------KITLG 531
            +  +LF         +      +      +      ++   L +               
Sbjct: 367 TSFVRLFAGMPRQPAAEGGRDAPDPMMRDAVLERDRGVIEGALARAANGFGGLDPIEVGL 426

Query: 532 STKEEKLLSLRIII---------------KKLPFSSCYSLTMHDISEWKQEKNKLSHAKK 576
           S   ++   + +                           L   D +  +Q + +++  +K
Sbjct: 427 SGPGDRSARVWMSPADSDGTPSPDAEARAGSDGDHERVILYALDTTAQRQLEQQVAQTQK 486

Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
           +              ++H+    L AIIG+S+++              +    I ++ N 
Sbjct: 487 MDTV-----GQLAGGIAHDFNNVLQAIIGYSDLLLASHR---PTDHAFQDIMQIKQNANR 538

Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696
              +V  LL  S+    +  L  E + + EA+S+   L       +R+ +       I  
Sbjct: 539 AASLVRQLLAFSR----RQTLRPEVMDVGEALSDLTLL-LKRLLGERVQLDFRHGREIWP 593

Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTT-----------HTSNEEVILRVRDTG 745
           I AD+   +Q+ +N+  NA    P GG + I T              + + V++ V DTG
Sbjct: 594 IKADVNQFEQVIVNLAVNARDAMPGGGSLTIRTANCPVDGERPVGIPAGDHVMIEVTDTG 653

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
            G+     +K  +PF          G+GTGLGL     +V+ + G   + ST  +GT   
Sbjct: 654 EGIPPEVRQKIFEPFFTTK----EIGKGTGLGLSTVFGIVNQSGGAIDVQSTVGEGTTFR 709

Query: 806 IIFPLYD 812
           I  P ++
Sbjct: 710 IYLPRHE 716



 Score = 65.4 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 51/464 (10%), Positives = 119/464 (25%), Gaps = 33/464 (7%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDV--SDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           +G +   +E   +  G  +F  +   +  +        +    +    +    +  +  +
Sbjct: 105 NGRMIYANEAYMRLAGGDSFSNL-RSIERIFVGAPEVSEAVYRLAQASRDDRAYAEEIRM 163

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
            P  G           + +    R       + +  +         + + L     +L  
Sbjct: 164 SPPPGGAADRDFAWYRIAVRPIPRHRGSAALWTVSDITHERERQENVFQELQHAIDYLDH 223

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHL--RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
              G  S++     ++   +    L   +    S   +              P L  E  
Sbjct: 224 APAGFLSIDAAGSIVYMNATLASWLGYDLATVGSGGLKLLEIAPGADMLTASPGLPGEVR 283

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKE----SFEYLSHRNHPSLSAYFDEGENLTP 323
           +     D    N      + Y                  L+              E    
Sbjct: 284 TDRYDIDLRRRNGQPLPTRLYHRVAYGQDGAPGPSRTFVLNRSAGSDADEPQRAAEVRLA 343

Query: 324 ETVDKCPIPFF-VYSHGNLFYANPSFLLLT--KYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
             ++  PI    +   G +  AN SF+ L     +             ++    L  +  
Sbjct: 344 RFLNNSPIAIATLDRDGRVIRANTSFVRLFAGMPRQPAAEGGRDAPDPMMRDAVLERDRG 403

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
           +    L R+             +    + S  +   P   ++  P    +     +    
Sbjct: 404 VIEGALARAANGFGGLDPIEVGLSGPGDRSARVWMSPA-DSDGTPSPDAEARAGSDGDHE 462

Query: 441 RI--------NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
           R+         +R++E +V Q   + +            GI    N  +  + GY    +
Sbjct: 463 RVILYALDTTAQRQLEQQVAQTQKM-DTVGQL-----AGGIAHDFNNVLQAIIGYSDLLL 516

Query: 493 L-RKPFTVFLEQNTP-----SVMNHYLTEILSLDLRQTLEKITL 530
              +P     +         +     + ++L+   RQTL    +
Sbjct: 517 ASHRPTDHAFQDIMQIKQNANRAASLVRQLLAFSRRQTLRPEVM 560



 Score = 45.0 bits (105), Expect = 0.052,   Method: Composition-based stats.
 Identities = 34/330 (10%), Positives = 68/330 (20%), Gaps = 25/330 (7%)

Query: 79  IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK 138
                 F  +IDA G +  ++  L   +G     +    L  +      D       L  
Sbjct: 222 DHAPAGFL-SIDAAGSIVYMNATLASWLGYDLATVGSGGLKLLEIAPGADMLTASPGLPG 280

Query: 139 RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
              T      L    G    +P  L     Y ++      R F +       +D     +
Sbjct: 281 EVRTDRYDIDLRRRNG--QPLPTRLYHRVAYGQDGAPGPSRTFVLNR--SAGSDADEPQR 336

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP-------------------PPHLRMKNK 239
             + + +          +       +    +                     P   M++ 
Sbjct: 337 AAEVRLARFLNNSPIAIATLDRDGRVIRANTSFVRLFAGMPRQPAAEGGRDAPDPMMRDA 396

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
           V                  +  L   E  L    D                +    ++  
Sbjct: 397 VLERDRGVIEGALARAANGFGGLDPIEVGLSGPGDRSARVWMSPADSDGTPSPDAEARAG 456

Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDD 359
            +    R          + +        +        + G     N     +  Y  +  
Sbjct: 457 SDGDHERVILYALDTTAQRQLEQQVAQTQKMDTVGQLAGGIAHDFNNVLQAIIGYSDL-L 515

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389
           +                  NA +   L R 
Sbjct: 516 LASHRPTDHAFQDIMQIKQNANRAASLVRQ 545


>gi|326340179|gb|EGD63983.1| Hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Escherichia coli O157:H7 str. 1125]
          Length = 1139

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 88/414 (21%), Positives = 162/414 (39%), Gaps = 12/414 (2%)

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
            W+  +                  +    +       ++ +  +E ++    ++ ++  +
Sbjct: 470 TWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISFRKALSDSLPN 529

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--NTPSVMNHYLTEILSLDL 521
              ++N +G ++S N A    F          P         +  S  +    E      
Sbjct: 530 PTYVVNWQGNVISHNSAFEHYFTADYYKNAMLPLENSESPFKDVFSNTHEVTAETKENRT 589

Query: 522 RQTLEKIT-LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
             T       G  K        +        + Y     DI+E +   + L   +  A  
Sbjct: 590 IYTQVFEIDNGIEKRCINHWHTLCNLPASEHAVYICGWQDITETRDLIHALEVERNKAIN 649

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            +  KS FLA +SHEIRTP+++I+GF E++       L   + +E  +    +G  +L +
Sbjct: 650 ATVAKSQFLATMSHEIRTPISSIMGFLELLS---GSGLSKEQRVEAISLAYATGQSLLGL 706

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILA 699
           + ++LD+ KIESG   L  + V +   V          A  K I +  S    +   +  
Sbjct: 707 IGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPDHYLVKI 766

Query: 700 DLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMTNYELEKA 756
           D ++ KQ+  N+LSNA+ FT  G  +I  S  H  +   ++   + D+G G++  E ++ 
Sbjct: 767 DPQAFKQVLSNLLSNALKFTTEGAVKITTSLVHIDDNHAVIKMTIMDSGSGLSQEEQQQL 826

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            K + Q   S   +  G+GLGL + K ++    G   + S P  GT   I  P+
Sbjct: 827 FKRYSQT--SAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPV 878


>gi|320662964|gb|EFX30288.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Escherichia coli O55:H7 str. USDA 5905]
          Length = 1197

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 88/414 (21%), Positives = 162/414 (39%), Gaps = 12/414 (2%)

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
            W+  +                  +    +       ++ +  +E ++    ++ ++  +
Sbjct: 528 TWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISFRKALSDSLPN 587

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--NTPSVMNHYLTEILSLDL 521
              ++N +G ++S N A    F          P         +  S  +    E      
Sbjct: 588 PTYVVNWQGNVISHNSAFEHYFTADYYKNAMLPLENSESPFKDVFSNTHEVTAETKENRT 647

Query: 522 RQTLEKIT-LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
             T       G  K        +        + Y     DI+E +   + L   +  A  
Sbjct: 648 IYTQVFEIDNGIEKRCINHWHTLCNLPASEHAVYICGWQDITETRDLIHALEVERNKAIN 707

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            +  KS FLA +SHEIRTP+++I+GF E++       L   + +E  +    +G  +L +
Sbjct: 708 ATVAKSQFLATMSHEIRTPISSIMGFLELLS---GSGLSKEQRVEAISLAYATGQSLLGL 764

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILA 699
           + ++LD+ KIESG   L  + V +   V          A  K I +  S    +   +  
Sbjct: 765 IGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPDHYLVKI 824

Query: 700 DLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMTNYELEKA 756
           D ++ KQ+  N+LSNA+ FT  G  +I  S  H  +   ++   + D+G G++  E ++ 
Sbjct: 825 DPQAFKQVLSNLLSNALKFTTEGAVKITTSLVHIDDNHAVIKMTIMDSGSGLSQEEQQQL 884

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            K + Q   S   +  G+GLGL + K ++    G   + S P  GT   I  P+
Sbjct: 885 FKRYSQT--SAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPV 936


>gi|265988706|ref|ZP_06101263.1| multi-sensor hybrid histidine kinase [Brucella pinnipedialis
           M292/94/1]
 gi|264660903|gb|EEZ31164.1| multi-sensor hybrid histidine kinase [Brucella pinnipedialis
           M292/94/1]
          Length = 891

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 99/626 (15%), Positives = 209/626 (33%), Gaps = 51/626 (8%)

Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271
           +G      + Y   +  +    +R  ++V +     +     L       L+++E     
Sbjct: 138 RGQIVYANQAYARMTGATDADGIRPLDQVLASEPAASDAIYRLTNAVRDGLSAQEEVRIS 197

Query: 272 QEDFHTINLNQY--TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE-----NLTPE 324
                  N +      +     L+  ++     ++ +         ++            
Sbjct: 198 GGLSRGANGSLAPVWYRIKARALEGGAEFKGPLVAWQVADISEERAEQERFFQELQEAIN 257

Query: 325 TVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
            +D  P  FF     G + Y N +               +  L+ ++    ++       
Sbjct: 258 HLDHAPAGFFSANPAGRIIYLNATLAEWLGVDLTQFTPGSLTLNDIVAGSGMA------L 311

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
           +   +++      +     +      SLA+ F    +  +         I  +  +   +
Sbjct: 312 IKAVKAEPGTSRNTVIDLDLIKRNGQSLAVRFYHRVQTARDGMPGTTRTIVLDRAEGDDS 371

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG--YPVEDILRKPFTVFL 501
                   ++      +    IA ++ EG  L TN     +F      + I R+     +
Sbjct: 372 SVAQRSAEVRFTRFFNSAPMAIAAVDAEGHTLRTNARFLDIFSGVVDRDAIDRRVKLENV 431

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII----IKKLPFSSCYSLT 557
                    +                 T+    EE+ +   +     +          ++
Sbjct: 432 VHERDRETFNKALAAAFAGQASISPVDTVLPGNEERHIRFYMSSVTDLGGEAAEEAAVIS 491

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
             + +E K  +N+++ ++K+              ++H+    LTAII  S+++       
Sbjct: 492 AVETTEQKALENQMAQSQKM-----QAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNH--R 544

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
             +P + +  N I ++ N    +V  LL  S+    +  L  E + L + +++ + ++  
Sbjct: 545 ASDPSFPDIMN-IKQNANRAASLVRQLLAFSR----RQTLRPEVLDLTDVLAD-LRMLLA 598

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT------- 730
               K I ++     ++  + ADL   +Q+A+N+  NA    P GGQI + T        
Sbjct: 599 RLVGKDIELKIDHGRDLWPVKADLGQFEQVAVNLAVNARDAMPEGGQITLRTRNIPAADA 658

Query: 731 -------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
                      + V+  V DTG G+    LEK  +PF          G+GTGLGL +   
Sbjct: 659 AKLHYRDLPEADYVVFEVEDTGTGIPADVLEKIFEPFFTTK----EVGKGTGLGLSMVYG 714

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFP 809
           ++    G  Y  S   KGT  +I  P
Sbjct: 715 IIKQTGGFIYCDSEVGKGTTFKIFLP 740



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/238 (11%), Positives = 66/238 (27%), Gaps = 7/238 (2%)

Query: 319 ENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
           ++L    +D  P    +    G + YAN ++  +T     D I     +  L   P  SD
Sbjct: 118 QDLAHSFMDTQPEGTVISDPRGQIVYANQAYARMTGATDADGIRPLDQV--LASEPAASD 175

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
                   +                 +    +   + +    +A +         +  + 
Sbjct: 176 AIYRLTNAVRDGLSAQEEVRISGGLSRGANGSLAPVWYRIKARALEGGAEFKGPLVAWQV 235

Query: 438 VDTRINKRKMEIEVMQLC-SI--LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
            D    + + E    +L  +I  L+    G    N  G I+  N  +++  G  +     
Sbjct: 236 ADISEERAEQERFFQELQEAINHLDHAPAGFFSANPAGRIIYLNATLAEWLGVDLTQFTP 295

Query: 495 KPFT-VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
              T   +   +   +   +           ++   +    +   +     ++     
Sbjct: 296 GSLTLNDIVAGSGMALIKAVKAEPGTSRNTVIDLDLIKRNGQSLAVRFYHRVQTARDG 353



 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 46/420 (10%), Positives = 102/420 (24%), Gaps = 38/420 (9%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD--ILHIDPNNHIGDLLKRQNTWYGKT 147
           D  G +   ++   +  G      I   L  V        D    + + ++   +   + 
Sbjct: 136 DPRGQIVYANQAYARMTGATDADGI-RPLDQVLASEPAASDAIYRLTNAVRDGLSAQEEV 194

Query: 148 TL-----WPIEGTNLYVPIDLAALPIYSRNREFSG-FRGFGIVHVNRVDNDPRALGKRLD 201
            +         G+   V   + A  +     EF G    + +  ++    +     + L 
Sbjct: 195 RISGGLSRGANGSLAPVWYRIKARALEGGA-EFKGPLVAWQVADISEERAEQERFFQELQ 253

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR------MKNKVSSLTEYYAHKDDVLK 255
           +  +HL     G  S       I+   +    L           ++           ++K
Sbjct: 254 EAINHLDHAPAGFFSANPAGRIIYLNATLAEWLGVDLTQFTPGSLTLNDIVAGSGMALIK 313

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN--NSKESFEYLSHRNHPSLSA 313
             K    TS  + +                     T ++          L        S 
Sbjct: 314 AVKAEPGTSRNTVIDLDLIKRNGQSLAVRFYHRVQTARDGMPGTTRTIVLDRAEGDDSSV 373

Query: 314 YFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLT-KYKSVDDIEIAGGLSTLLD 371
                E       +  P+    V + G+    N  FL +       D I+    L  +  
Sbjct: 374 AQRSAEVRFTRFFNSAPMAIAAVDAEGHTLRTNARFLDIFSGVVDRDAIDRRVKLENV-V 432

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
             +  +         +    +       L     N E  +                    
Sbjct: 433 HERDRETFNKALAAAFAGQASISPVDTVL---PGNEERHIRFYMSSVTDLGGEAAEEAAV 489

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSI----------LEATSDGIAIINREGIILSTNRAV 481
               E  + +  + +M  +  ++ ++                 I + +    +L TN   
Sbjct: 490 ISAVETTEQKALENQM-AQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSD---LLLTNHRA 545



 Score = 48.9 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 45/134 (33%), Gaps = 12/134 (8%)

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY-LT 514
           S ++   +G  I +  G I+  N+A +++ G    D   +P    L     +    Y LT
Sbjct: 123 SFMDTQPEGTVISDPRGQIVYANQAYARMTGATDAD-GIRPLDQVLASEPAASDAIYRLT 181

Query: 515 EILSLDLRQTLEKITLG---STKEEKLLSLRIIIKKLPFSSC-------YSLTMHDISEW 564
             +   L    E    G         L  +   IK               +  + DISE 
Sbjct: 182 NAVRDGLSAQEEVRISGGLSRGANGSLAPVWYRIKARALEGGAEFKGPLVAWQVADISEE 241

Query: 565 KQEKNKLSHAKKIA 578
           + E+ +     + A
Sbjct: 242 RAEQERFFQELQEA 255


>gi|254499073|ref|ZP_05111765.1| transmission sensor LetS [Legionella drancourtii LLAP12]
 gi|254351700|gb|EET10543.1| transmission sensor LetS [Legionella drancourtii LLAP12]
          Length = 876

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 78/241 (32%), Positives = 131/241 (54%), Gaps = 10/241 (4%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +LS  KK  E++S  KS+F+A +SHEIRTP+  +IGF+ V+   +  PL     ++Y   
Sbjct: 247 ELSLDKKKTEEKSRQKSEFIANMSHEIRTPMNGVIGFTNVLLESKLDPL----QLDYVKT 302

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I  S   +L I+ND+LD SKI++GK++L   P+++   + E ++L    A++K I +   
Sbjct: 303 IKTSAQDLLGIINDILDFSKIDAGKLHLDCIPLNIRNCIDEVLTLAAPNAHKKGIDLIPI 362

Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDT 744
              N+P  +L D   +KQ   N+++NAI FT  G  +++ T      +    + + + DT
Sbjct: 363 TDINVPKTVLGDSFRIKQFISNLVTNAIKFTDHG-YVLVRTKVEQETDKDYTLCITISDT 421

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G++  +  K    F Q   S   R  G+GLGL + K + +A  G+  + S   KG+  
Sbjct: 422 GLGISPEDQNKLFTAFNQADTSITRRYGGSGLGLVICKKLCEAMSGRLSMTSELNKGSAF 481

Query: 805 E 805
            
Sbjct: 482 T 482


>gi|209399540|ref|YP_002271857.1| sensor histidine kinase/response regulator EvgS [Escherichia coli
           O157:H7 str. EC4115]
 gi|217327803|ref|ZP_03443886.1| sensor histidine kinase/response regulator EvgS [Escherichia coli
           O157:H7 str. TW14588]
 gi|209160940|gb|ACI38373.1| sensor histidine kinase/response regulator EvgS [Escherichia coli
           O157:H7 str. EC4115]
 gi|217320170|gb|EEC28595.1| sensor histidine kinase/response regulator EvgS [Escherichia coli
           O157:H7 str. TW14588]
 gi|320192003|gb|EFW66648.1| Hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Escherichia coli O157:H7 str. EC1212]
 gi|326344183|gb|EGD67944.1| Hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Escherichia coli O157:H7 str. 1044]
          Length = 1127

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 88/414 (21%), Positives = 162/414 (39%), Gaps = 12/414 (2%)

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
            W+  +                  +    +       ++ +  +E ++    ++ ++  +
Sbjct: 458 TWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISFRKALSDSLPN 517

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--NTPSVMNHYLTEILSLDL 521
              ++N +G ++S N A    F          P         +  S  +    E      
Sbjct: 518 PTYVVNWQGNVISHNSAFEHYFTADYYKNAMLPLENSESPFKDVFSNTHEVTAETKENRT 577

Query: 522 RQTLEKIT-LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
             T       G  K        +        + Y     DI+E +   + L   +  A  
Sbjct: 578 IYTQVFEIDNGIEKRCINHWHTLCNLPASEHAVYICGWQDITETRDLIHALEVERNKAIN 637

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            +  KS FLA +SHEIRTP+++I+GF E++       L   + +E  +    +G  +L +
Sbjct: 638 ATVAKSQFLATMSHEIRTPISSIMGFLELLS---GSGLSKEQRVEAISLAYATGQSLLGL 694

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILA 699
           + ++LD+ KIESG   L  + V +   V          A  K I +  S    +   +  
Sbjct: 695 IGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPDHYLVKI 754

Query: 700 DLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMTNYELEKA 756
           D ++ KQ+  N+LSNA+ FT  G  +I  S  H  +   ++   + D+G G++  E ++ 
Sbjct: 755 DPQAFKQVLSNLLSNALKFTTEGAVKITTSLVHIDDNHAVIKMTIMDSGSGLSQEEQQQL 814

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            K + Q   S   +  G+GLGL + K ++    G   + S P  GT   I  P+
Sbjct: 815 FKRYSQT--SAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPV 866


>gi|808104|gb|AAA82924.1| regulator of multiple functions [Pseudomonas tolaasii]
          Length = 909

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 77/243 (31%), Positives = 143/243 (58%), Gaps = 8/243 (3%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  A+K A + S  KS+FLA +SHEIRTPL  I+GF+ +++     P    R+++Y   
Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSELSP----RHVDYLGT 325

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I++S + +L I+N++LD SKIE+GK+ L   P +L + + + ++++   A+ K++ + + 
Sbjct: 326 IEKSADNLLGIINEILDFSKIEAGKLVLDSVPFNLRDLLQDTLTILAPAAHAKQLELVSL 385

Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQI---IISTTHTSNEEVILRVRDTG 745
              + P  ++ D   +KQI  N++SNAI FT  G  +   ++      + ++ + V+DTG
Sbjct: 386 VYRDTPLAVVGDPLRLKQILTNLISNAIKFTREGTIVARAMVEDEEEDSVQLRISVQDTG 445

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G++N ++    + F +  NS   +  GTGLGL ++K +++   G+  + STP +G+   
Sbjct: 446 IGLSNQDVRALFQAFTEADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFW 505

Query: 806 IIF 808
           I  
Sbjct: 506 ISL 508


>gi|15802913|ref|NP_288940.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Escherichia coli O157:H7 EDL933]
 gi|15832503|ref|NP_311276.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Escherichia coli O157:H7 str. Sakai]
 gi|168748323|ref|ZP_02773345.1| sensor histidine kinase/response regulator EvgS [Escherichia coli
           O157:H7 str. EC4113]
 gi|168757413|ref|ZP_02782420.1| sensor histidine kinase/response regulator EvgS [Escherichia coli
           O157:H7 str. EC4401]
 gi|168763545|ref|ZP_02788552.1| sensor histidine kinase/response regulator EvgS [Escherichia coli
           O157:H7 str. EC4501]
 gi|168770938|ref|ZP_02795945.1| sensor histidine kinase/response regulator EvgS [Escherichia coli
           O157:H7 str. EC4486]
 gi|168772797|ref|ZP_02797804.1| sensor histidine kinase/response regulator EvgS [Escherichia coli
           O157:H7 str. EC4196]
 gi|168780330|ref|ZP_02805337.1| sensor histidine kinase/response regulator EvgS [Escherichia coli
           O157:H7 str. EC4076]
 gi|168787283|ref|ZP_02812290.1| sensor histidine kinase/response regulator EvgS [Escherichia coli
           O157:H7 str. EC869]
 gi|168800705|ref|ZP_02825712.1| sensor histidine kinase/response regulator EvgS [Escherichia coli
           O157:H7 str. EC508]
 gi|195938723|ref|ZP_03084105.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Escherichia coli O157:H7 str. EC4024]
 gi|208806690|ref|ZP_03249027.1| sensor histidine kinase/response regulator EvgS [Escherichia coli
           O157:H7 str. EC4206]
 gi|208813535|ref|ZP_03254864.1| sensor histidine kinase/response regulator EvgS [Escherichia coli
           O157:H7 str. EC4045]
 gi|208820000|ref|ZP_03260320.1| sensor histidine kinase/response regulator EvgS [Escherichia coli
           O157:H7 str. EC4042]
 gi|254794332|ref|YP_003079169.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Escherichia coli O157:H7 str. TW14359]
 gi|261223180|ref|ZP_05937461.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Escherichia coli O157:H7 str. FRIK2000]
 gi|261259270|ref|ZP_05951803.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Escherichia coli O157:H7 str. FRIK966]
 gi|291283606|ref|YP_003500424.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Escherichia coli O55:H7 str. CB9615]
 gi|17366358|sp|P58402|EVGS_ECO57 RecName: Full=Sensor protein evgS; Flags: Precursor
 gi|12516740|gb|AAG57495.1|AE005468_4 putative sensor for regulator EvgA [Escherichia coli O157:H7 str.
           EDL933]
 gi|13362719|dbj|BAB36672.1| putative sensor for regulator EvgA [Escherichia coli O157:H7 str.
           Sakai]
 gi|187771129|gb|EDU34973.1| sensor histidine kinase/response regulator EvgS [Escherichia coli
           O157:H7 str. EC4196]
 gi|188017187|gb|EDU55309.1| sensor histidine kinase/response regulator EvgS [Escherichia coli
           O157:H7 str. EC4113]
 gi|189002202|gb|EDU71188.1| sensor histidine kinase/response regulator EvgS [Escherichia coli
           O157:H7 str. EC4076]
 gi|189355573|gb|EDU73992.1| sensor histidine kinase/response regulator EvgS [Escherichia coli
           O157:H7 str. EC4401]
 gi|189360184|gb|EDU78603.1| sensor histidine kinase/response regulator EvgS [Escherichia coli
           O157:H7 str. EC4486]
 gi|189366312|gb|EDU84728.1| sensor histidine kinase/response regulator EvgS [Escherichia coli
           O157:H7 str. EC4501]
 gi|189372943|gb|EDU91359.1| sensor histidine kinase/response regulator EvgS [Escherichia coli
           O157:H7 str. EC869]
 gi|189377054|gb|EDU95470.1| sensor histidine kinase/response regulator EvgS [Escherichia coli
           O157:H7 str. EC508]
 gi|208726491|gb|EDZ76092.1| sensor histidine kinase/response regulator EvgS [Escherichia coli
           O157:H7 str. EC4206]
 gi|208734812|gb|EDZ83499.1| sensor histidine kinase/response regulator EvgS [Escherichia coli
           O157:H7 str. EC4045]
 gi|208740123|gb|EDZ87805.1| sensor histidine kinase/response regulator EvgS [Escherichia coli
           O157:H7 str. EC4042]
 gi|209764538|gb|ACI80581.1| putative sensor for regulator EvgA [Escherichia coli]
 gi|209764540|gb|ACI80582.1| putative sensor for regulator EvgA [Escherichia coli]
 gi|209764542|gb|ACI80583.1| putative sensor for regulator EvgA [Escherichia coli]
 gi|209764544|gb|ACI80584.1| putative sensor for regulator EvgA [Escherichia coli]
 gi|209764546|gb|ACI80585.1| putative sensor for regulator EvgA [Escherichia coli]
 gi|254593732|gb|ACT73093.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Escherichia coli O157:H7 str. TW14359]
 gi|290763479|gb|ADD57440.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Escherichia coli O55:H7 str. CB9615]
 gi|320641022|gb|EFX10503.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Escherichia coli O157:H7 str. G5101]
 gi|320646410|gb|EFX15333.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Escherichia coli O157:H- str. 493-89]
 gi|320651679|gb|EFX20059.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Escherichia coli O157:H- str. H 2687]
 gi|320657260|gb|EFX25065.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
 gi|320667710|gb|EFX34621.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Escherichia coli O157:H7 str. LSU-61]
          Length = 1197

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 88/414 (21%), Positives = 162/414 (39%), Gaps = 12/414 (2%)

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
            W+  +                  +    +       ++ +  +E ++    ++ ++  +
Sbjct: 528 TWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISFRKALSDSLPN 587

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--NTPSVMNHYLTEILSLDL 521
              ++N +G ++S N A    F          P         +  S  +    E      
Sbjct: 588 PTYVVNWQGNVISHNSAFEHYFTADYYKNAMLPLENSESPFKDVFSNTHEVTAETKENRT 647

Query: 522 RQTLEKIT-LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
             T       G  K        +        + Y     DI+E +   + L   +  A  
Sbjct: 648 IYTQVFEIDNGIEKRCINHWHTLCNLPASEHAVYICGWQDITETRDLIHALEVERNKAIN 707

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            +  KS FLA +SHEIRTP+++I+GF E++       L   + +E  +    +G  +L +
Sbjct: 708 ATVAKSQFLATMSHEIRTPISSIMGFLELLS---GSGLSKEQRVEAISLAYATGQSLLGL 764

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILA 699
           + ++LD+ KIESG   L  + V +   V          A  K I +  S    +   +  
Sbjct: 765 IGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPDHYLVKI 824

Query: 700 DLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMTNYELEKA 756
           D ++ KQ+  N+LSNA+ FT  G  +I  S  H  +   ++   + D+G G++  E ++ 
Sbjct: 825 DPQAFKQVLSNLLSNALKFTTEGAVKITTSLVHIDDNHAVIKMTIMDSGSGLSQEEQQQL 884

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            K + Q   S   +  G+GLGL + K ++    G   + S P  GT   I  P+
Sbjct: 885 FKRYSQT--SAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPV 936


>gi|256961794|ref|ZP_05565965.1| hypothetical protein EFGG_00872 [Enterococcus faecalis Merz96]
 gi|256964991|ref|ZP_05569162.1| hypothetical protein EFHG_00287 [Enterococcus faecalis HIP11704]
 gi|257079145|ref|ZP_05573506.1| hypothetical protein EFIG_00410 [Enterococcus faecalis JH1]
 gi|256952290|gb|EEU68922.1| hypothetical protein EFGG_00872 [Enterococcus faecalis Merz96]
 gi|256955487|gb|EEU72119.1| hypothetical protein EFHG_00287 [Enterococcus faecalis HIP11704]
 gi|256987175|gb|EEU74477.1| hypothetical protein EFIG_00410 [Enterococcus faecalis JH1]
          Length = 576

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 71/363 (19%), Positives = 155/363 (42%), Gaps = 30/363 (8%)

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
            Q   +L+    G+ II+ +G +   N  + ++ G        K       +        
Sbjct: 235 EQFHELLDELMIGVFIIDTQGRLRLLNPKMQEMLGLSA-----KNMQSNYLEVIQDADLI 289

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY--SLTMHDISEWKQEKN 569
           +L   +  +     ++IT+        L L +       ++ Y      +D++  +Q + 
Sbjct: 290 HLIHQVVAEKNSLHQEITVTQGPTPLRLDLSLRYLDDQSANDYQVLGIAYDLTRVRQLE- 348

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
                          + DF++ VSHE++TP+T+++GF+E + +            ++ + 
Sbjct: 349 -------------KMQKDFVSNVSHELKTPVTSLLGFTETLIDG--AKEDPEVLNQFLHI 393

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           + +    +  ++ ++L++S+  S  +    + ++L++ ++E +   Q     K++    +
Sbjct: 394 MQKDAQRLQQLIQEILELSR-GSATIPYAEQEITLEKFITEILGSYQQQLAAKQLK---T 449

Query: 690 FANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747
             + +P             I  N++ NAI ++   GQI IS     N+++ L V+DTG+G
Sbjct: 450 VVHGLPESQFFTKYELFYPIVKNLIENAIQYSQENGQITISYAIE-NQQLRLSVQDTGIG 508

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           ++  + E+  + F ++  ++     GTGLGL + +   +   GK  I S    GT   I 
Sbjct: 509 ISQKDQERIFERFYRVDKARSRHSGGTGLGLAIVQNYTELLGGKIAIDSHLGLGTTFTIT 568

Query: 808 FPL 810
            PL
Sbjct: 569 LPL 571


>gi|256853259|ref|ZP_05558629.1| sensory box histidine kinase [Enterococcus faecalis T8]
 gi|256711718|gb|EEU26756.1| sensory box histidine kinase [Enterococcus faecalis T8]
          Length = 587

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 71/363 (19%), Positives = 155/363 (42%), Gaps = 30/363 (8%)

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
            Q   +L+    G+ II+ +G +   N  + ++ G        K       +        
Sbjct: 250 EQFHELLDELMIGVFIIDTQGRLRLLNPKMQEMLGLSA-----KNMQSNYLEVIQDADLI 304

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY--SLTMHDISEWKQEKN 569
           +L   +  +     ++IT+        L L +       ++ Y      +D++  +Q + 
Sbjct: 305 HLIHQVVAEKNSLHQEITVTQGPTPLRLDLSLRYLDDQSANDYQVLGIAYDLTRVRQLE- 363

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
                          + DF++ VSHE++TP+T+++GF+E + +            ++ + 
Sbjct: 364 -------------KMQKDFVSNVSHELKTPVTSLLGFTETLIDG--AKEDPEVLNQFLHI 408

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           + +    +  ++ ++L++S+  S  +    + ++L++ ++E +   Q     K++    +
Sbjct: 409 MQKDAQRLQQLIQEILELSR-GSATIPYAEQEITLEKFITEILGSYQQQLAAKQLK---T 464

Query: 690 FANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747
             + +P             I  N++ NAI ++   GQI IS     N+++ L V+DTG+G
Sbjct: 465 VVHGLPESQFFTKYELFYPIVKNLIENAIQYSQENGQITISYAIE-NQQLRLSVQDTGIG 523

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           ++  + E+  + F ++  ++     GTGLGL + +   +   GK  I S    GT   I 
Sbjct: 524 ISQKDQERIFERFYRVDKARSRHSGGTGLGLAIVQNYTELLGGKIAIDSHLGLGTTFTIT 583

Query: 808 FPL 810
            PL
Sbjct: 584 LPL 586


>gi|293405824|ref|ZP_06649816.1| hybrid sensory histidine kinase [Escherichia coli FVEC1412]
 gi|298381573|ref|ZP_06991172.1| hypothetical protein ECFG_01307 [Escherichia coli FVEC1302]
 gi|291428032|gb|EFF01059.1| hybrid sensory histidine kinase [Escherichia coli FVEC1412]
 gi|298279015|gb|EFI20529.1| hypothetical protein ECFG_01307 [Escherichia coli FVEC1302]
          Length = 1127

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 88/419 (21%), Positives = 162/419 (38%), Gaps = 12/419 (2%)

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
            W+  +                  +    +       ++ +  +E ++    ++ ++  +
Sbjct: 458 TWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISFRKALSDSLPN 517

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--NTPSVMNHYLTEILSLDL 521
              ++N +G ++S N A    F          P         +  S  +    E      
Sbjct: 518 PTYVVNWQGNVISHNSAFEHYFTADYYKNAMLPLENSESPFKDVFSNTHEVTAETKENRT 577

Query: 522 RQTLEKIT-LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
             T       G  K        +        + Y     DI+E +   + L   +  A  
Sbjct: 578 IYTQVFEIDNGIEKRCINHWHTLCNLPASDHAVYICGWQDITETRDLIHALEVERNKAIN 637

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            +  KS FLA +SHEIRTP+++I+GF E++       L   + +E  +    +G  +L +
Sbjct: 638 ATVAKSQFLATMSHEIRTPISSIMGFLELLS---GSGLSKEQRVEAISLAYATGQSLLGL 694

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILA 699
           + ++LD+ KIESG   L  + V +   V          A  K I +  S        +  
Sbjct: 695 IGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPEHYLVKI 754

Query: 700 DLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMTNYELEKA 756
           D ++ KQ+  N+LSNA+ FT  G  +I  S  +  +   ++   + D+G G++  E ++ 
Sbjct: 755 DPQAFKQVLSNLLSNALKFTTEGAVKITTSLVNIDDNHAVIKMTIMDSGSGLSQEEQQQL 814

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            K + Q   S   +  G+GLGL + K ++    G   + S P  GT   I  P+  T  
Sbjct: 815 FKRYSQT--SAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVEITQQ 871


>gi|218705887|ref|YP_002413406.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Escherichia coli UMN026]
 gi|300901337|ref|ZP_07119429.1| response regulator receiver domain protein [Escherichia coli MS
           198-1]
 gi|218432984|emb|CAR13879.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Escherichia coli UMN026]
 gi|300355238|gb|EFJ71108.1| response regulator receiver domain protein [Escherichia coli MS
           198-1]
          Length = 1197

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 88/419 (21%), Positives = 162/419 (38%), Gaps = 12/419 (2%)

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
            W+  +                  +    +       ++ +  +E ++    ++ ++  +
Sbjct: 528 TWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISFRKALSDSLPN 587

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--NTPSVMNHYLTEILSLDL 521
              ++N +G ++S N A    F          P         +  S  +    E      
Sbjct: 588 PTYVVNWQGNVISHNSAFEHYFTADYYKNAMLPLENSESPFKDVFSNTHEVTAETKENRT 647

Query: 522 RQTLEKIT-LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
             T       G  K        +        + Y     DI+E +   + L   +  A  
Sbjct: 648 IYTQVFEIDNGIEKRCINHWHTLCNLPASDHAVYICGWQDITETRDLIHALEVERNKAIN 707

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            +  KS FLA +SHEIRTP+++I+GF E++       L   + +E  +    +G  +L +
Sbjct: 708 ATVAKSQFLATMSHEIRTPISSIMGFLELLS---GSGLSKEQRVEAISLAYATGQSLLGL 764

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILA 699
           + ++LD+ KIESG   L  + V +   V          A  K I +  S        +  
Sbjct: 765 IGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPEHYLVKI 824

Query: 700 DLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMTNYELEKA 756
           D ++ KQ+  N+LSNA+ FT  G  +I  S  +  +   ++   + D+G G++  E ++ 
Sbjct: 825 DPQAFKQVLSNLLSNALKFTTEGAVKITTSLVNIDDNHAVIKMTIMDSGSGLSQEEQQQL 884

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            K + Q   S   +  G+GLGL + K ++    G   + S P  GT   I  P+  T  
Sbjct: 885 FKRYSQT--SAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVEITQQ 941


>gi|317029553|ref|XP_001391885.2| histidine kinase J7 [Aspergillus niger CBS 513.88]
          Length = 1308

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 76/255 (29%), Positives = 129/255 (50%), Gaps = 12/255 (4%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           +S  +    + + A++ AE  +  KS+FLA +SHEIRTP+  IIG +++  +        
Sbjct: 702 VSNLRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDD---LK 758

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
           P   E  N +    N +L I++D+LDISKIE+ +M +   P ++   V  A+  + + AN
Sbjct: 759 PYTREMLNVVHNLANSLLTIIDDILDISKIEANRMVIESIPFTVRGTVFNALKTLAVKAN 818

Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV-- 737
           EK + +     N +P  ++ D   ++QI LN++ NAI FT  G ++ ++   +  E+   
Sbjct: 819 EKFLSLTYQVDNTVPDYVIGDPFRLRQIILNLVGNAIKFTEHG-EVKLTICKSDREQCAA 877

Query: 738 -----ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
                   V DTG+G+   +L+     F Q   S   R  GTGLGL ++K +V+   G  
Sbjct: 878 DEYAFEFSVSDTGIGIEEDKLDLIFDTFQQADGSTTRRFGGTGLGLSISKRLVNLMGGDV 937

Query: 793 YIFSTPAKGTLIEII 807
           ++ S    G+     
Sbjct: 938 WVTSEYGHGSTFHFT 952


>gi|293382857|ref|ZP_06628775.1| sensory box histidine kinase [Enterococcus faecalis R712]
 gi|293389656|ref|ZP_06634111.1| sensory box histidine kinase [Enterococcus faecalis S613]
 gi|307269515|ref|ZP_07550854.1| PAS domain S-box [Enterococcus faecalis TX4248]
 gi|307273087|ref|ZP_07554333.1| PAS domain S-box [Enterococcus faecalis TX0855]
 gi|312901892|ref|ZP_07761157.1| PAS domain S-box [Enterococcus faecalis TX0470]
 gi|312907672|ref|ZP_07766663.1| PAS domain S-box [Enterococcus faecalis DAPTO 512]
 gi|312910289|ref|ZP_07769136.1| PAS domain S-box [Enterococcus faecalis DAPTO 516]
 gi|291079522|gb|EFE16886.1| sensory box histidine kinase [Enterococcus faecalis R712]
 gi|291081049|gb|EFE18012.1| sensory box histidine kinase [Enterococcus faecalis S613]
 gi|306510072|gb|EFM79096.1| PAS domain S-box [Enterococcus faecalis TX0855]
 gi|306514135|gb|EFM82711.1| PAS domain S-box [Enterococcus faecalis TX4248]
 gi|310626700|gb|EFQ09983.1| PAS domain S-box [Enterococcus faecalis DAPTO 512]
 gi|311289562|gb|EFQ68118.1| PAS domain S-box [Enterococcus faecalis DAPTO 516]
 gi|311291085|gb|EFQ69641.1| PAS domain S-box [Enterococcus faecalis TX0470]
 gi|315037116|gb|EFT49048.1| PAS domain S-box [Enterococcus faecalis TX0027]
 gi|315144943|gb|EFT88959.1| PAS domain S-box [Enterococcus faecalis TX2141]
 gi|315162379|gb|EFU06396.1| PAS domain S-box [Enterococcus faecalis TX0645]
 gi|315168898|gb|EFU12915.1| PAS domain S-box [Enterococcus faecalis TX1341]
 gi|315576087|gb|EFU88278.1| PAS domain S-box [Enterococcus faecalis TX0309B]
 gi|315580661|gb|EFU92852.1| PAS domain S-box [Enterococcus faecalis TX0309A]
          Length = 591

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 71/363 (19%), Positives = 155/363 (42%), Gaps = 30/363 (8%)

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
            Q   +L+    G+ II+ +G +   N  + ++ G        K       +        
Sbjct: 250 EQFHELLDELMIGVFIIDTQGRLRLLNPKMQEMLGLSA-----KNMQSNYLEVIQDADLI 304

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY--SLTMHDISEWKQEKN 569
           +L   +  +     ++IT+        L L +       ++ Y      +D++  +Q + 
Sbjct: 305 HLIHQVVAEKNSLHQEITVTQGPTPLRLDLSLRYLDDQSANDYQVLGIAYDLTRVRQLE- 363

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
                          + DF++ VSHE++TP+T+++GF+E + +            ++ + 
Sbjct: 364 -------------KMQKDFVSNVSHELKTPVTSLLGFTETLIDG--AKEDPEVLNQFLHI 408

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           + +    +  ++ ++L++S+  S  +    + ++L++ ++E +   Q     K++    +
Sbjct: 409 MQKDAQRLQQLIQEILELSR-GSATIPYAEQEITLEKFITEILGSYQQQLAAKQLK---T 464

Query: 690 FANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747
             + +P             I  N++ NAI ++   GQI IS     N+++ L V+DTG+G
Sbjct: 465 VVHGLPESQFFTKYELFYPIVKNLIENAIQYSQENGQITISYAIE-NQQLRLSVQDTGIG 523

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           ++  + E+  + F ++  ++     GTGLGL + +   +   GK  I S    GT   I 
Sbjct: 524 ISQKDQERIFERFYRVDKARSRHSGGTGLGLAIVQNYTELLGGKIAIDSHLGLGTTFTIT 583

Query: 808 FPL 810
            PL
Sbjct: 584 LPL 586


>gi|153214295|ref|ZP_01949312.1| sensor histidine kinase [Vibrio cholerae 1587]
 gi|124115443|gb|EAY34263.1| sensor histidine kinase [Vibrio cholerae 1587]
          Length = 736

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 68/256 (26%), Positives = 120/256 (46%), Gaps = 15/256 (5%)

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           L   K  A+  +  KS FLA +SHEIRTP+  ++G ++++      P    +  ++   +
Sbjct: 343 LEAEKVKAQASTKAKSVFLATLSHEIRTPMNGVLGTAQILLKDELTP----KQRQHLTSL 398

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
             SG  ++ ++N++LD SKIE GK  L      L   +    S+      EK +  + + 
Sbjct: 399 YESGEHMMSLLNEILDYSKIEQGKFELDHSAFPLKSIIGSIKSIYSSLCVEKGLKFQLNS 458

Query: 691 A-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT---SNEEVILRVRDTGV 746
              +      D   ++QI  N+LSNA+ FT +G  + I  +         +I++V+DTG+
Sbjct: 459 EITDGRWYYGDKARLRQIIFNLLSNAVKFTEAGF-VAIGLSEESCDEENYLIIKVQDTGI 517

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+    L +  +PF Q  +    R  GTGLGL + K + +   G   + S   +G+  ++
Sbjct: 518 GIAQESLGRIFRPFEQAESHTTRRFGGTGLGLAIVKQIAELMNGTVLVQSEVGQGSCFKV 577

Query: 807 IF------PLYDTSHP 816
                   P+ +   P
Sbjct: 578 RVKLAITEPVTEDVKP 593


>gi|307329202|ref|ZP_07608367.1| GAF sensor hybrid histidine kinase [Streptomyces violaceusniger Tu
            4113]
 gi|306885101|gb|EFN16122.1| GAF sensor hybrid histidine kinase [Streptomyces violaceusniger Tu
            4113]
          Length = 1851

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 73/347 (21%), Positives = 153/347 (44%), Gaps = 24/347 (6%)

Query: 491  DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
            +++              V+     E+      ++ E        +     L    ++L  
Sbjct: 1265 EMIGTSVNTISVNTKTEVLLKQSQELTEQLRERSAELENRQKALQASNAELEEKSERLAR 1324

Query: 551  SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
             +      +  +E ++ +  L    +       +KS+FLA +SHE+RTPL +++  ++++
Sbjct: 1325 QNRDIEVKN--TEIEEARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLL 1382

Query: 611  KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
             +   G L  P+ +E+A  I  +G+ +L ++ND+LD+SK+E+GKM++    ++L + V  
Sbjct: 1383 ADNADGNLS-PKQVEFAETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVDY 1441

Query: 671  AISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIII-- 727
              +  +    EK +      +  +P  +  D + + Q+  N+LSNA+ FT SG   ++  
Sbjct: 1442 VEATFRPLTAEKGLDFSVRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDSGAVELVIR 1501

Query: 728  ------------------STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
                              +      + +   V DTG+G+   ++    + F Q   +   
Sbjct: 1502 PAGADVPHAIREQLLEHGALRDADADMIAFSVTDTGIGIAASKMRVIFEAFKQADGTTSR 1561

Query: 770  RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
            +  GTGLGL +++ +     G+ +  S P +G+   +  PL+ +  P
Sbjct: 1562 KYGGTGLGLSISREIARLLGGEIHAASEPGRGSTFTLYLPLHPSELP 1608


>gi|262374290|ref|ZP_06067566.1| sensor protein gacS [Acinetobacter junii SH205]
 gi|262310848|gb|EEY91936.1| sensor protein gacS [Acinetobacter junii SH205]
          Length = 936

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 79/243 (32%), Positives = 128/243 (52%), Gaps = 14/243 (5%)

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
           +  A   +  KS FLA +SHE+RTPL +I GF  ++  Q+   L N + + Y   I +S 
Sbjct: 279 RDQAISSNQSKSVFLANISHELRTPLNSIDGFIHLLLRQQ--NLSNEQNL-YLQTIRKSS 335

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
             +L ++ND+LD SKI++GK+ L   P  L+EA+ + + ++   A +K I +   +A NI
Sbjct: 336 AHLLALINDVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKHINMAFYYAENI 395

Query: 695 PR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDTGVGMT 749
           P+ ++ D    KQI  N++SNAI FTP G +II+      +E     +   V+D+G+G++
Sbjct: 396 PQHVVGDALRFKQILTNLISNAIKFTPDG-EIIVRVRMEDDEIGQCLLHFSVQDSGIGLS 454

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP-----AKGTLI 804
             + +K  + F Q   S   +  GTGLGL ++K +V    G              KG+  
Sbjct: 455 GTDRKKLFESFSQGDASVTRQFGGTGLGLAISKQLVHLMHGHIGFEDNQERAPTEKGSTF 514

Query: 805 EII 807
              
Sbjct: 515 WFT 517


>gi|83945039|ref|ZP_00957405.1| sensor histidine kinase/response regulator [Oceanicaulis alexandrii
           HTCC2633]
 gi|83851821|gb|EAP89676.1| sensor histidine kinase/response regulator [Oceanicaulis alexandrii
           HTCC2633]
          Length = 614

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 82/365 (22%), Positives = 162/365 (44%), Gaps = 32/365 (8%)

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
            ++L+A ++ +   +  G +   N A    FG   +D + + F V    +          
Sbjct: 16  RALLDAMAELVLARDSSGRVTEVNAAFLNAFGGSRQDWIGRWFAVAPAPS---------- 65

Query: 515 EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA 574
              +    +  +           +      +              D+SE ++        
Sbjct: 66  ---TTGQPRRYDAAMRTRAGAAWIEWSETTL----ADGGTIAVGRDVSEERR-------E 111

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
           +  A + +  KS F A V+HE+RTPL+  +G + ++K+       +P    Y   +  S 
Sbjct: 112 RAEASEAAQGKSVFFASVTHELRTPLSGALGAAALLKDSGL----HPDQAAYLEAVRSSA 167

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
              L++++D+LD+S++E+G++ L  EPV L   + +A  ++   A EK + +  + ++++
Sbjct: 168 QHALNLIDDILDLSRLEAGRLTLRAEPVDLRALIEDACEILATRAAEKGLALAHAISSDV 227

Query: 695 P-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753
           P  I AD   ++QI  N+  NA+ FT +GG +I+  ++    E+ L  +DTG G++  + 
Sbjct: 228 PAEIRADPARLRQILFNLGGNAVKFTETGG-VIVQASYHD-GELSLIFKDTGPGISKTDQ 285

Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
               K F +   ++     G GLGL + K + +A  G+  + S P +G      FP    
Sbjct: 286 STLFKHFERG-AAEHNATPGAGLGLAMVKRLAEAMEGEVGVSSEPGQGATFWTRFPALAL 344

Query: 814 SHPHD 818
           + P +
Sbjct: 345 APPPE 349



 Score = 44.6 bits (104), Expect = 0.061,   Method: Composition-based stats.
 Identities = 34/371 (9%), Positives = 71/371 (19%), Gaps = 31/371 (8%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D+ G + E++       G      IG                     ++ +         
Sbjct: 30  DSSGRVTEVNAAFLNAFGGSRQDWIGRWFAVAPAPSTTGQPRRYDAAMRTRA-------- 81

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
                      I+ +   +           G  +    R   +     +     F+ +  
Sbjct: 82  -------GAAWIEWSETTLADG-GTI--AVGRDVSEERRERAEASEAAQGKSVFFASVTH 131

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
             +   S       +       P      +    +  +A        +   L     +  
Sbjct: 132 ELRTPLSGALGAAALLKDSGLHPDQAAYLEAVRSSAQHALNLIDDILDLSRLEAGRLTLR 191

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
            E  D   +       +     L   + E    L+H     + A          + +   
Sbjct: 192 AEPVDLRAL------IEDACEILATRAAEKGLALAHAISSDVPAEIRADPARLRQILFNL 245

Query: 330 -PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVM--- 385
                     G +                D                     A        
Sbjct: 246 GGNAVKFTETGGVIVQASYHDGELSLIFKDTGPGISKTDQSTLFKHFERGAAEHNATPGA 305

Query: 386 ---LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
              L    R   A    +       + +   T  P       PE  P +G          
Sbjct: 306 GLGLAMVKRLAEAMEGEVGVSSEPGQGATFWTRFPALALAPPPEERPLSGRTIIIASDSA 365

Query: 443 NKRKMEIEVMQ 453
            +R+      +
Sbjct: 366 IRREALRLKAE 376


>gi|330980175|gb|EGH78357.1| response regulator receiver:ATP-binding region [Pseudomonas
           syringae pv. aptata str. DSM 50252]
          Length = 837

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 76/243 (31%), Positives = 140/243 (57%), Gaps = 8/243 (3%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  A+K A + S  KS+FLA +SHEIRTPL  I+GF+ +++     P    R  +Y   
Sbjct: 190 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSELTP----RQFDYLGT 245

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I++S + +L I+N++LD SKIE+GK+ L   P +L + + + ++++   A+ K++ + + 
Sbjct: 246 IEKSADNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSL 305

Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQI---IISTTHTSNEEVILRVRDTG 745
              + P  +  D   ++QI  N++SNAI FT  G  +   ++      + ++ + V+DTG
Sbjct: 306 VYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAMLEDETEEHAQLRISVQDTG 365

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+++ ++    + F Q  NS   +  GTGLGL ++K +++   G+  + STP +G+   
Sbjct: 366 IGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFW 425

Query: 806 IIF 808
           I  
Sbjct: 426 ISL 428


>gi|315054893|ref|XP_003176821.1| serine/threonine protein kinase [Arthroderma gypseum CBS 118893]
 gi|311338667|gb|EFQ97869.1| serine/threonine protein kinase [Arthroderma gypseum CBS 118893]
          Length = 2384

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 72/252 (28%), Positives = 136/252 (53%), Gaps = 14/252 (5%)

Query: 565  KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
            K  + + +H  K+ E  +  KS FLA +SH++RTP+T +IG SE++K  +     + +  
Sbjct: 1866 KVAEVQANHNVKLKEDAAKAKSIFLANISHDLRTPMTGVIGLSELLKATKL----DAKQD 1921

Query: 625  EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
             Y   I    + +L ++ND+LD SK+E+GKM +   P++L + ++E +  ++    +K +
Sbjct: 1922 VYVESIRVCADTLLTLINDILDFSKLEAGKMKVSIVPINLRQTIAEVVRALRYTHRDKGL 1981

Query: 685  LIR---TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN--EEVIL 739
                   S   N+  ++ D   + QI +N+LSN+  FTP+G  + +      +  E++ +
Sbjct: 1982 TTVEDLVSIDPNLL-VMGDPVRLHQIFMNLLSNSYKFTPAGS-VTVRAIIEEDTPEKIRM 2039

Query: 740  R--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA-NMGKFYIFS 796
               V DTG+G++  +L +  +PF Q  +S      G+GLGL + KA+++    G+ ++ S
Sbjct: 2040 TCKVADTGIGISEEQLVRLFRPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGRIWLQS 2099

Query: 797  TPAKGTLIEIIF 808
               +GT +    
Sbjct: 2100 KEGEGTTVTFTL 2111


>gi|237747922|ref|ZP_04578402.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
 gi|229379284|gb|EEO29375.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
          Length = 728

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 80/332 (24%), Positives = 146/332 (43%), Gaps = 20/332 (6%)

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGSTK-EEKLLSLRIIIKKLPFS 551
           K    F+       +   +   +      +           + + +   LR+    +   
Sbjct: 252 KYCDTFVHPEDRERLIQSIDPDIIARSISSQNSFYELEYRRRYDNEYQWLRLQFIPMETR 311

Query: 552 SC----YSLTMHDISEWKQEK----NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
           +       L   +I + K+++      L  A   A K ++ KS FL+ +SH+IRTPL  I
Sbjct: 312 NGIPSKVILATQNIHQQKKQEALERQALRDACDAANKANAAKSRFLSCMSHDIRTPLNVI 371

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +G +++          N R  +    I  S   +L +VN++LD+S+IESG + L  +   
Sbjct: 372 LGMNQMANRNI---EDNERVRKCLESISVSSRHLLTLVNEILDMSRIESGNLILAEQAFD 428

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSG 722
            +E V  AI ++  +  +K      +  N +   ++ D   ++QI  N+LSNA+ +TPS 
Sbjct: 429 FEELVKNAIEMIGPFIVQKHHRFTINTDNLVHKNVIGDAPHLQQILQNLLSNAVKYTPSN 488

Query: 723 GQIIISTTHTSNE-----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
           G+I ++             + +R+ D G GM+     +   PF +  +++  + +GTGLG
Sbjct: 489 GKIDLNIRDKIGAPTGYTTIEIRIADNGYGMSKDVQARIFDPFERGNDTRINKIQGTGLG 548

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           L + + +V    G   + S P KGT   I  P
Sbjct: 549 LTITQNLVQLMNGDIQLESEPGKGTTFTITIP 580


>gi|218690513|ref|YP_002398725.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Escherichia coli ED1a]
 gi|218428077|emb|CAR08995.2| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Escherichia coli ED1a]
          Length = 1197

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 90/421 (21%), Positives = 167/421 (39%), Gaps = 16/421 (3%)

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
            W+  +                  +    +       ++ +  +E ++    ++ ++  +
Sbjct: 528 TWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISFRKALSDSLPN 587

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--NTPSVMNHYLTEILSLDL 521
              ++N +G ++S N A    F          P         +  S  +    E      
Sbjct: 588 PTYVVNWQGNVISHNSAFEHYFTADYYKNAMLPLENSESPFKDVFSNTHEVTAETKENRT 647

Query: 522 RQTLEKIT-LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
             T       G  K        +        + Y     DI+E +   + L   +  A  
Sbjct: 648 IYTQVFEIDNGIEKRCINHWHTLCNLPASEHAVYICGWQDITETRDLIHALEVERNKAIN 707

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            +  KS FLA +SHEIRTP+++I+GF E++       L   + +E  +    +G  +L +
Sbjct: 708 ATVAKSQFLATMSHEIRTPISSIMGFLELLS---GSGLSKEQRVEAISLAYATGQSLLGL 764

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR---I 697
           + ++LD+ KIESG   L  + V +   V          A  K I +  S ++ +P    +
Sbjct: 765 IGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIAL--SCSSTLPERYLV 822

Query: 698 LADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMTNYELE 754
             D ++ KQ+  N+LSNA+ FT  G  +I  S  H  +   ++   + D+G G++  E +
Sbjct: 823 KIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLGHIDDNHAVIKMTIMDSGSGLSQEEQQ 882

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           +  K + Q   S   +  G+GLGL + K ++    G   + S P  GT+  I  P+  T 
Sbjct: 883 QLFKRYSQT--SAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTIFTITIPVEITQ 940

Query: 815 H 815
            
Sbjct: 941 Q 941


>gi|119896457|ref|YP_931670.1| phosphate regulon sensor protein [Azoarcus sp. BH72]
 gi|119668870|emb|CAL92783.1| phosphate regulon sensor protein [Azoarcus sp. BH72]
          Length = 423

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 76/413 (18%), Positives = 148/413 (35%), Gaps = 36/413 (8%)

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN-----KRKMEIEVMQLCSILEATSDG 464
              + +         P      G    D+  R       + ++   + +     +A  DG
Sbjct: 34  YRLVQWTREPVGTPLPRAAGTWGKVFADMSRRSRLAYDMRERLAATLDRFRDASQAMPDG 93

Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
           +  +     I   N    + FG      +  P T  +          YL           
Sbjct: 94  VMYLAESDTIEWMNLKAEQHFGLDHTRDIGAPVTNLVR---QPAFVQYL-----HGGHYE 145

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
              +   +      L +++I           +   DIS+ ++ +                
Sbjct: 146 ESLVLPSTRPGGLTLQVQVIPF---GDGQKMVLSRDISQLERLET--------------M 188

Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
           + DF+A VSHE+RTPLT + GF E + +       +     Y        N +  ++ DL
Sbjct: 189 RQDFVANVSHELRTPLTVVGGFLETLIDGAGDFEPDDVQR-YLRLALEQSNRMRHLIEDL 247

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN-EKRILIRTSFANNIPRILADLRS 703
           L +S +E+G      E V +   V +  +  +  ++   ++ +       +   L   + 
Sbjct: 248 LTLSALETGAPAPAEERVGVATLVRDVYAEAEALSSGRHQLSLVLDTDAVL---LGSHKE 304

Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
           ++    N+ SNA+ +TP GG+I +             VRD G+G+    + +  + F ++
Sbjct: 305 LRSAFANLCSNAVRYTPDGGRIEVGWRQDDAGG-EFWVRDDGIGIDAQHIPRLTERFYRV 363

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
              +     GTGLGL + K ++  +  + ++ STP  G+   + FP      P
Sbjct: 364 DRGRSRETGGTGLGLAIVKHILTRHQAELHVVSTPGAGSRFSVRFPRARLMQP 416


>gi|110642559|ref|YP_670289.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Escherichia coli 536]
 gi|191173763|ref|ZP_03035285.1| sensor histidine kinase/response regulator EvgS [Escherichia coli
           F11]
 gi|300997592|ref|ZP_07181801.1| response regulator receiver domain protein [Escherichia coli MS
           200-1]
 gi|110344151|gb|ABG70388.1| sensor protein EvgS precursor [Escherichia coli 536]
 gi|190905911|gb|EDV65528.1| sensor histidine kinase/response regulator EvgS [Escherichia coli
           F11]
 gi|300304163|gb|EFJ58683.1| response regulator receiver domain protein [Escherichia coli MS
           200-1]
 gi|324011070|gb|EGB80289.1| response regulator receiver domain protein [Escherichia coli MS
           60-1]
          Length = 1197

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 90/421 (21%), Positives = 167/421 (39%), Gaps = 16/421 (3%)

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
            W+  +                  +    +       ++ +  +E ++    ++ ++  +
Sbjct: 528 TWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISFRKALSDSLPN 587

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--NTPSVMNHYLTEILSLDL 521
              ++N +G ++S N A    F          P         +  S  +    E      
Sbjct: 588 PTYVVNWQGNVISHNSAFEHYFTADYYKNAMLPLENSESPFKDVFSNTHEVTAETKENRT 647

Query: 522 RQTLEKIT-LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
             T       G  K        +        + Y     DI+E +   + L   +  A  
Sbjct: 648 IYTQVFEIDNGIEKRCINHWHTLCNLPASEHAVYICGWQDITETRDLIHALEVERNKAIN 707

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            +  KS FLA +SHEIRTP+++I+GF E++       L   + +E  +    +G  +L +
Sbjct: 708 ATVAKSQFLATMSHEIRTPISSIMGFLELLS---GSGLSKEQRVEAISLAYATGQSLLGL 764

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR---I 697
           + ++LD+ KIESG   L  + V +   V          A  K I +  S ++ +P    +
Sbjct: 765 IGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIAL--SCSSTLPERYLV 822

Query: 698 LADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMTNYELE 754
             D ++ KQ+  N+LSNA+ FT  G  +I  S  H  +   ++   + D+G G++  E +
Sbjct: 823 KIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLGHIDDNHAVIKMTIMDSGSGLSQEEQQ 882

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           +  K + Q   S   +  G+GLGL + K ++    G   + S P  GT+  I  P+  T 
Sbjct: 883 QLFKRYSQT--SAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTIFTITIPVEITQ 940

Query: 815 H 815
            
Sbjct: 941 Q 941


>gi|302036149|ref|YP_003796471.1| putative sensor protein PilS [Candidatus Nitrospira defluvii]
 gi|300604213|emb|CBK40545.1| putative Sensor protein PilS [Candidatus Nitrospira defluvii]
          Length = 619

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 91/628 (14%), Positives = 196/628 (31%), Gaps = 61/628 (9%)

Query: 214 HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE 273
                   +       P     +  + + +                P ++  E S+PE +
Sbjct: 1   MVDTGHASHIHQGNAPPMLSSTLPPQAAGVGPSLNSNSLKSPLADPPHVSPGERSMPEIK 60

Query: 274 DFHTINLNQYTK--------KQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET 325
                 +                F + +  S  +F  L    +    AY      L    
Sbjct: 61  TRLHWLMGLRVVVVTVMLGLSLAFQSTRGESAPAFTALIIFTYTITIAYALVLRRLASPA 120

Query: 326 -----------VDKCPIPFFVYSHGNLFYANPSFLLLT-KYKSVDDIEIAGGLSTLLDAP 373
                      VD       +   G +        ++T    S+      G ++      
Sbjct: 121 AHTVFTWVQVGVDIVLETVLIVRTGGVESPFAVLYVITVTVASLVPHRRVGIVTGAGCTL 180

Query: 374 KLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
                  ++   L  +      +      +    E       +    +    + +     
Sbjct: 181 LFGGITVVQYFGLLNAAGWLPPSKLEGPEVLQTFEVYGLAFLVVGFLSGALADKLHHADQ 240

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
              + +  +++ ++  E     SI+ + S G+   + EG I S N A  ++ GY    + 
Sbjct: 241 SLREKEQGLSRLQVFHE-----SIVRSISSGVFTTDEEGRITSFNPAAHEVTGYAFAAVQ 295

Query: 494 RKPFTVFL-EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
            + +                LT +        L      S      L L + +  L    
Sbjct: 296 GRLWRDVFNWHPGTPSEEAALTSL------SPLRFEVECSHANGSRLVLGMTVSPLQEQG 349

Query: 553 ---CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                     D+++ +  + +    ++ A   +    +  A ++HEIR PL A+ G  ++
Sbjct: 350 TQRGLVCVFKDLTQIRYLEEE---MRRRAWLAN--LGEMSAGMAHEIRNPLGALAGAMQM 404

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           ++        +       +   R    + +I+ + L  ++  +    L+     L++ ++
Sbjct: 405 LRQDVG---SDDTSQRLMDIAIREARRLDNIITEFLQYARPPA----LNLAEHDLNKVLA 457

Query: 670 EAISLVQLYANEK-RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
           + + L+Q  A  +  I I +  A N      D   +KQ+  N+ +NA     +GG + I+
Sbjct: 458 DTLDLIQHEARSRTGITIVSRMAPNQLMAQVDQDQLKQVFWNLATNAFDAMSAGGTLTIA 517

Query: 729 TTHTS-------NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           T           ++ + +  +D G G+     +K   PF           EG+GLGL   
Sbjct: 518 TGSRQVEVGGRRSDVIEIAFQDNGEGIPKQNFDKIFLPFFTTKK------EGSGLGLAQV 571

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             +V+ + G   + S    G    +  P
Sbjct: 572 HRIVELHEGWIKVESEIGHGARFVVCLP 599



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/250 (8%), Positives = 52/250 (20%), Gaps = 8/250 (3%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDV--SDILHIDPNNHIGDLLKRQNTW 143
            +  D  G +   +    +  G     + G    DV                 L   +  
Sbjct: 267 VFTTDEEGRITSFNPAAHEVTGYAFAAVQGRLWRDVFNWHPGTPSEE----AALTSLSPL 322

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSG-FRGFGIVHVNRVDNDPRALGKRLDK 202
             +       G+ L + + ++ L      R     F+    +     +   RA    L +
Sbjct: 323 RFEVECSHANGSRLVLGMTVSPLQEQGTQRGLVCVFKDLTQIRYLEEEMRRRAWLANLGE 382

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
             + +    +           +  Q         +    ++ E     D+++        
Sbjct: 383 MSAGMAHEIRNPLGALAGAMQMLRQDVGSDDTSQRLMDIAIREAR-RLDNIITEFLQYAR 441

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
               +      +    +     + +                                NL 
Sbjct: 442 PPALNLAEHDLNKVLADTLDLIQHEARSRTGITIVSRMAPNQLMAQVDQDQLKQVFWNLA 501

Query: 323 PETVDKCPIP 332
               D     
Sbjct: 502 TNAFDAMSAG 511


>gi|229549876|ref|ZP_04438601.1| sensor histidine kinase [Enterococcus faecalis ATCC 29200]
 gi|229304949|gb|EEN70945.1| sensor histidine kinase [Enterococcus faecalis ATCC 29200]
          Length = 591

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 73/364 (20%), Positives = 160/364 (43%), Gaps = 32/364 (8%)

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
            Q   +L+    G+ II+ +G +   N  + ++ G        K       +        
Sbjct: 250 EQFHELLDELMIGVFIIDTQGRLRLLNPKMQEMLGLSA-----KNMQSNYLEVIQDADLI 304

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY--SLTMHDISEWKQEKN 569
           +L   +  +     ++IT+        L L +       ++ Y      +D++  +Q + 
Sbjct: 305 HLIHQVVAEKNSLHQEITVTQGPTPLRLDLSLRYLDDQSANDYQVLGIAYDLTRVRQLE- 363

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE-YAN 628
                          + DF++ VSHE++TP+T+++GF+E + +   G   +P+ ++ + +
Sbjct: 364 -------------KMQKDFVSNVSHELKTPVTSLLGFTETLID---GAKEDPKVLDQFLH 407

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            + +    +  ++ ++L++S+  S  +    + ++L++ ++E +   Q     K++    
Sbjct: 408 IMQKDAQRLQQLIQEILELSR-GSATIPYAEQEITLEKFITEILGSYQQQLAAKQLK--- 463

Query: 689 SFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
           +  + +P             I  N++ NAI ++   GQI IS     N+++ L V+DTG+
Sbjct: 464 TVVHGLPESQFFTKYELFYPIVKNLIENAIQYSQKNGQITISYAIE-NQQLRLSVQDTGI 522

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G++  + E+  + F ++  ++     GTGLGL + +   +   GK  I S    GT   I
Sbjct: 523 GISQKDQERIFERFYRVDKARSRHSGGTGLGLAIVQNYTELLGGKIAIDSHLGLGTTFTI 582

Query: 807 IFPL 810
             PL
Sbjct: 583 TLPL 586


>gi|326409060|gb|ADZ66125.1| sensory box histidine kinase/response regulator [Brucella
           melitensis M28]
 gi|326538767|gb|ADZ86982.1| PAS domain S-box-containing protein [Brucella melitensis M5-90]
          Length = 906

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 102/626 (16%), Positives = 208/626 (33%), Gaps = 51/626 (8%)

Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271
           +G      + Y   +  +    +R  ++V +     +     L       L+++E     
Sbjct: 153 RGQIVYANQAYARMTGATDADGIRPLDQVLASEPAASDAIYRLTNAVRDGLSAQEEVRIS 212

Query: 272 QEDFHTINLNQY--TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE-----NLTPE 324
                  N +      +     L+  ++     ++ +         ++            
Sbjct: 213 GGLSRGANGSLAPVWYRIKARALEGGAEFKGPLVAWQVADISEERAEQERFFQELQEAIN 272

Query: 325 TVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
            +D  P  FF     G + Y N +                   ++L     ++ +     
Sbjct: 273 HLDHAPAGFFSANPAGRIIYLNATLAEWLGVD-----LTQFTPASLTLNDIVAGSGMALI 327

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
             +     T       L  I+ N ++ LA+ F    +  +         I  +  +   +
Sbjct: 328 KAVKAEPGTSRNTVIDLDLIKRNGQS-LAVRFYHRVQTARDGMPGTTRTIVLDRAEGDDS 386

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG--YPVEDILRKPFTVFL 501
                   ++      +    IA ++ EG  L TN     +F      + I R+     +
Sbjct: 387 SVAQRSAEVRFTRFFNSAPMAIAAVDAEGHTLRTNARFLDIFSGVVDRDAIDRRVKLENV 446

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF----SSCYSLT 557
                    +                 T+    EE+ +   +                ++
Sbjct: 447 VHERDRETFNKALAAAFAGQASISPVDTVLPGNEERHIRFYMSPVTDLGGEAAEEAAVIS 506

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
             + +E K  +N+++ ++K+              ++H+    LTAII  S+++       
Sbjct: 507 AVETTEQKALENQMAQSQKM-----QAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNH--R 559

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
             +P + +  N I ++ N    +V  LL  S+    +  L  E + L + +++ + ++  
Sbjct: 560 ASDPSFPDIMN-IKQNANRAASLVRQLLAFSR----RQTLRPEVLDLTDVLAD-LRMLLA 613

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT------- 730
               K I ++     ++  + ADL   +Q+A+N+  NA    P GGQI + T        
Sbjct: 614 RLVGKDIELKIDHGRDLWPVKADLGQFEQVAVNLAVNARDAMPEGGQITLRTRNIPAADA 673

Query: 731 -------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
                      + V+  V DTG G+    LEK  +PF          G+GTGLGL +   
Sbjct: 674 AKLHYRDLPEADYVVFEVEDTGTGIPADVLEKIFEPFFTTK----EVGKGTGLGLSMVYG 729

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFP 809
           ++    G  Y  S   KGT  +I  P
Sbjct: 730 IIKQTGGFIYCDSEVGKGTTFKIFLP 755



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/238 (11%), Positives = 66/238 (27%), Gaps = 7/238 (2%)

Query: 319 ENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
           ++L    +D  P    +    G + YAN ++  +T     D I     +  L   P  SD
Sbjct: 133 QDLAHSFMDTQPEGTVISDPRGQIVYANQAYARMTGATDADGIRPLDQV--LASEPAASD 190

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
                   +                 +    +   + +    +A +         +  + 
Sbjct: 191 AIYRLTNAVRDGLSAQEEVRISGGLSRGANGSLAPVWYRIKARALEGGAEFKGPLVAWQV 250

Query: 438 VDTRINKRKMEIEVMQLC-SI--LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
            D    + + E    +L  +I  L+    G    N  G I+  N  +++  G  +     
Sbjct: 251 ADISEERAEQERFFQELQEAINHLDHAPAGFFSANPAGRIIYLNATLAEWLGVDLTQFTP 310

Query: 495 KPFT-VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
              T   +   +   +   +           ++   +    +   +     ++     
Sbjct: 311 ASLTLNDIVAGSGMALIKAVKAEPGTSRNTVIDLDLIKRNGQSLAVRFYHRVQTARDG 368



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 47/420 (11%), Positives = 103/420 (24%), Gaps = 38/420 (9%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD--ILHIDPNNHIGDLLKRQNTWYGKT 147
           D  G +   ++   +  G      I   L  V        D    + + ++   +   + 
Sbjct: 151 DPRGQIVYANQAYARMTGATDADGI-RPLDQVLASEPAASDAIYRLTNAVRDGLSAQEEV 209

Query: 148 TL-----WPIEGTNLYVPIDLAALPIYSRNREFSG-FRGFGIVHVNRVDNDPRALGKRLD 201
            +         G+   V   + A  +     EF G    + +  ++    +     + L 
Sbjct: 210 RISGGLSRGANGSLAPVWYRIKARALEGGA-EFKGPLVAWQVADISEERAEQERFFQELQ 268

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR------MKNKVSSLTEYYAHKDDVLK 255
           +  +HL     G  S       I+   +    L           ++           ++K
Sbjct: 269 EAINHLDHAPAGFFSANPAGRIIYLNATLAEWLGVDLTQFTPASLTLNDIVAGSGMALIK 328

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN--NSKESFEYLSHRNHPSLSA 313
             K    TS  + +                     T ++          L        S 
Sbjct: 329 AVKAEPGTSRNTVIDLDLIKRNGQSLAVRFYHRVQTARDGMPGTTRTIVLDRAEGDDSSV 388

Query: 314 YFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLT-KYKSVDDIEIAGGLSTLLD 371
                E       +  P+    V + G+    N  FL +       D I+    L  +  
Sbjct: 389 AQRSAEVRFTRFFNSAPMAIAAVDAEGHTLRTNARFLDIFSGVVDRDAIDRRVKLENV-V 447

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
             +  +         +    +       L     N E  +     P              
Sbjct: 448 HERDRETFNKALAAAFAGQASISPVDTVL---PGNEERHIRFYMSPVTDLGGEAAEEAAV 504

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSI----------LEATSDGIAIINREGIILSTNRAV 481
               E  + +  + +M  +  ++ ++                 I + +    +L TN   
Sbjct: 505 ISAVETTEQKALENQM-AQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSD---LLLTNHRA 560



 Score = 48.5 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 45/134 (33%), Gaps = 12/134 (8%)

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY-LT 514
           S ++   +G  I +  G I+  N+A +++ G    D   +P    L     +    Y LT
Sbjct: 138 SFMDTQPEGTVISDPRGQIVYANQAYARMTGATDAD-GIRPLDQVLASEPAASDAIYRLT 196

Query: 515 EILSLDLRQTLEKITLG---STKEEKLLSLRIIIKKLPFSSC-------YSLTMHDISEW 564
             +   L    E    G         L  +   IK               +  + DISE 
Sbjct: 197 NAVRDGLSAQEEVRISGGLSRGANGSLAPVWYRIKARALEGGAEFKGPLVAWQVADISEE 256

Query: 565 KQEKNKLSHAKKIA 578
           + E+ +     + A
Sbjct: 257 RAEQERFFQELQEA 270


>gi|300867145|ref|ZP_07111810.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC
           6506]
 gi|300334846|emb|CBN56976.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC
           6506]
          Length = 886

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 74/259 (28%), Positives = 142/259 (54%), Gaps = 14/259 (5%)

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           +  K+   +L+ AK+ A+  +  KSDFLA +SHE+RTPL  I+G+++++   +  P    
Sbjct: 403 TRVKERTAELTIAKEAADNANQAKSDFLANMSHELRTPLNGILGYAQILGRAKTLP---E 459

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
           +     + I + G+ +L ++ND+LD+SKIE+ K+ L  + + L   +   + + ++ +++
Sbjct: 460 KERHGVSIIHQCGSHLLTLINDVLDLSKIEARKLELTPKAIHLPSFLQGVVEICRVRSDQ 519

Query: 682 KRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----- 735
           K I        N+P  I+ D + ++Q+ LN+L NAI FT  G  I +     ++      
Sbjct: 520 KGIEFIYQPDINLPTGIITDEKRLRQVLLNLLGNAIKFTDKGS-ITLKVEVIASNATMPL 578

Query: 736 -EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
            ++  +V DTGVG+ + ++ K  + F Q+   ++ + EGTGLGL +++ +V+   GK  +
Sbjct: 579 PQLKFQVLDTGVGIASDQVNKLFQEFEQV-GDRKRQAEGTGLGLAISQKIVELMGGKIEV 637

Query: 795 FSTPAKGTLIE--IIFPLY 811
            S    G+     +  P+ 
Sbjct: 638 ESHLGIGSNFYFQVALPIA 656


>gi|240139289|ref|YP_002963764.1| sensor hybrid histidine kinase with multiple PAS and response
           regulator receiver domains [Methylobacterium extorquens
           AM1]
 gi|240009261|gb|ACS40487.1| sensor hybrid histidine kinase with multiple PAS and response
           regulator receiver domains [Methylobacterium extorquens
           AM1]
          Length = 903

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 97/667 (14%), Positives = 206/667 (30%), Gaps = 86/667 (12%)

Query: 190 DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH 249
            +        ++     ++  +        + +              +   +      A 
Sbjct: 92  VDAAPEGKLVVEDNGRMIYANEAYMRLAGGDSFSNLRSIERIFVGAPEVSEAVYRLAQAS 151

Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
           +DD    E+  +      +      ++ I +    + +    L       +      +  
Sbjct: 152 RDDRAYAEEIRMSPPPGGAADRDFAWYRIAVRPIPRHRGSAAL-------WTVSDITHER 204

Query: 310 SLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYK-------SVDDIE 361
                  +      + +D  P  F  + + G++ Y N +      Y         +  +E
Sbjct: 205 ERQENVFQELQHAIDYLDHAPAGFLSIDAAGSIVYMNATLASWLGYDLATVGSGGLKLLE 264

Query: 362 IAGGLSTLLDAPKLSDNNAIKP--VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
           IA G   L  +P L          + L R +   +                  +      
Sbjct: 265 IAPGADMLTASPGLPGEVRTDRYDIDLRRRNGQPLPTR---------------LYHRVAY 309

Query: 420 KANQFPENMPQNGIEP-EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
             +  P       +      D    +R  E+ + +    L  +   IA ++R+G ++  N
Sbjct: 310 GQDGAPGPSRTFVLNRSAGSDADEPQRAAEVRLARF---LNNSPIAIATLDRDGRVIRAN 366

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE-------KITLG 531
            +  +LF         +      +      +      ++   L +               
Sbjct: 367 TSFVRLFAGMPRQPAAEGGRDAPDPMMRDAVLERDRGVIEGALARAANGFGGLDPIEVGL 426

Query: 532 STKEEKLLSLRIII---------------KKLPFSSCYSLTMHDISEWKQEKNKLSHAKK 576
           S   ++   + +                           L   D +  +Q + +++  +K
Sbjct: 427 SGPGDRSARVWMSPADSDGTPSPDAEARAGSDGDHERVILYALDTTAQRQLEQQVAQTQK 486

Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
           +              ++H+    L AIIG+S+++              +    I ++ N 
Sbjct: 487 MDTV-----GQLAGGIAHDFNNVLQAIIGYSDLLLASHR---PTDHAFQDIMQIKQNANR 538

Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696
              +V  LL  S+    +  L  E + + EA+S+   L       +R+ +       I  
Sbjct: 539 AASLVRQLLAFSR----RQTLRPEVMDVGEALSDLTLL-LKRLLGERVQLDFRHGREIWP 593

Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTT-----------HTSNEEVILRVRDTG 745
           I AD+   +Q+ +N+  NA    P GG + I T              + + V++ V DTG
Sbjct: 594 IKADVNQFEQVIVNLAVNARDAMPGGGSLTIRTANCPVDGERPVGIPAGDHVMIEVTDTG 653

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
            G+     +K  +PF          G+GTGLGL     +V+ + G   + ST  +GT   
Sbjct: 654 EGIPPEVRQKIFEPFFTTK----EIGKGTGLGLSTVFGIVNQSGGAIDVQSTVGEGTTFR 709

Query: 806 IIFPLYD 812
           I  P ++
Sbjct: 710 IYLPRHE 716



 Score = 65.4 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 51/464 (10%), Positives = 119/464 (25%), Gaps = 33/464 (7%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDV--SDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           +G +   +E   +  G  +F  +   +  +        +    +    +    +  +  +
Sbjct: 105 NGRMIYANEAYMRLAGGDSFSNL-RSIERIFVGAPEVSEAVYRLAQASRDDRAYAEEIRM 163

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
            P  G           + +    R       + +  +         + + L     +L  
Sbjct: 164 SPPPGGAADRDFAWYRIAVRPIPRHRGSAALWTVSDITHERERQENVFQELQHAIDYLDH 223

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHL--RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
              G  S++     ++   +    L   +    S   +              P L  E  
Sbjct: 224 APAGFLSIDAAGSIVYMNATLASWLGYDLATVGSGGLKLLEIAPGADMLTASPGLPGEVR 283

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKE----SFEYLSHRNHPSLSAYFDEGENLTP 323
           +     D    N      + Y                  L+              E    
Sbjct: 284 TDRYDIDLRRRNGQPLPTRLYHRVAYGQDGAPGPSRTFVLNRSAGSDADEPQRAAEVRLA 343

Query: 324 ETVDKCPIPFF-VYSHGNLFYANPSFLLLT--KYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
             ++  PI    +   G +  AN SF+ L     +             ++    L  +  
Sbjct: 344 RFLNNSPIAIATLDRDGRVIRANTSFVRLFAGMPRQPAAEGGRDAPDPMMRDAVLERDRG 403

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
           +    L R+             +    + S  +   P   ++  P    +     +    
Sbjct: 404 VIEGALARAANGFGGLDPIEVGLSGPGDRSARVWMSPA-DSDGTPSPDAEARAGSDGDHE 462

Query: 441 RI--------NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
           R+         +R++E +V Q   + +            GI    N  +  + GY    +
Sbjct: 463 RVILYALDTTAQRQLEQQVAQTQKM-DTVGQL-----AGGIAHDFNNVLQAIIGYSDLLL 516

Query: 493 L-RKPFTVFLEQNTP-----SVMNHYLTEILSLDLRQTLEKITL 530
              +P     +         +     + ++L+   RQTL    +
Sbjct: 517 ASHRPTDHAFQDIMQIKQNANRAASLVRQLLAFSRRQTLRPEVM 560



 Score = 45.0 bits (105), Expect = 0.052,   Method: Composition-based stats.
 Identities = 34/330 (10%), Positives = 68/330 (20%), Gaps = 25/330 (7%)

Query: 79  IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK 138
                 F  +IDA G +  ++  L   +G     +    L  +      D       L  
Sbjct: 222 DHAPAGFL-SIDAAGSIVYMNATLASWLGYDLATVGSGGLKLLEIAPGADMLTASPGLPG 280

Query: 139 RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
              T      L    G    +P  L     Y ++      R F +       +D     +
Sbjct: 281 EVRTDRYDIDLRRRNG--QPLPTRLYHRVAYGQDGAPGPSRTFVLNR--SAGSDADEPQR 336

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP-------------------PPHLRMKNK 239
             + + +          +       +    +                     P   M++ 
Sbjct: 337 AAEVRLARFLNNSPIAIATLDRDGRVIRANTSFVRLFAGMPRQPAAEGGRDAPDPMMRDA 396

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
           V                  +  L   E  L    D                +    ++  
Sbjct: 397 VLERDRGVIEGALARAANGFGGLDPIEVGLSGPGDRSARVWMSPADSDGTPSPDAEARAG 456

Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDD 359
            +    R          + +        +        + G     N     +  Y  +  
Sbjct: 457 SDGDHERVILYALDTTAQRQLEQQVAQTQKMDTVGQLAGGIAHDFNNVLQAIIGYSDL-L 515

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389
           +                  NA +   L R 
Sbjct: 516 LASHRPTDHAFQDIMQIKQNANRAASLVRQ 545


>gi|239995384|ref|ZP_04715908.1| two-component hybrid sensor and regulator [Alteromonas macleodii
           ATCC 27126]
          Length = 707

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 77/311 (24%), Positives = 136/311 (43%), Gaps = 12/311 (3%)

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568
           +     +  +  +   L            LL +       P       +   ++  K   
Sbjct: 146 VVARFEQDATARVDVVLSIEVYLWLATLALLCIEAAFIFSPMERTVKRSFAKLTSLK--- 202

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
            +   +   A + S  KS+FL+ +SHE+RTP+  + G  E+  +         +   Y  
Sbjct: 203 EQAESSADEARRASKAKSEFLSSMSHELRTPMNGLFGMIELAIDNP------DKSNIYLK 256

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
               +G  +L ++ND+LDISKIE+GK+ +   PV L + + + +SL ++Y   K +    
Sbjct: 257 KAKTAGRQLLVLINDILDISKIEAGKIKIEQAPVDLLQVLDDVVSLQRVYCQRKGLEFHY 316

Query: 689 SFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNE-EVILRVRDTG 745
               ++P ++  D+  + QI  N+LSNAI FT  G   + ++ T   N   +   V DTG
Sbjct: 317 LKDPDLPHVIKGDITRISQILHNLLSNAIKFTEQGSVTLKVTYTKRPNGNYLSFDVIDTG 376

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+ + +L+   K F Q   S      GTGLGL +AK +    +G   + S   +G+   
Sbjct: 377 IGIESSKLDNIFKKFEQADQSTTREYGGTGLGLSIAKQLAKLMLGDINVTSFVGQGSTFS 436

Query: 806 IIFPLYDTSHP 816
                 ++  P
Sbjct: 437 FTMAAEESQLP 447


>gi|189466077|ref|ZP_03014862.1| hypothetical protein BACINT_02447 [Bacteroides intestinalis DSM
           17393]
 gi|189434341|gb|EDV03326.1| hypothetical protein BACINT_02447 [Bacteroides intestinalis DSM
           17393]
          Length = 1045

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 105/525 (20%), Positives = 189/525 (36%), Gaps = 49/525 (9%)

Query: 309 PSLSAYFDEGENLTPETVDKCPIP----FFVYS-HGNLFY-----ANPSFLLLTKYKSVD 358
               A   +         +  PI       VY   G +       ANP F    K    +
Sbjct: 402 RRKQAEQIKLMTSYHSLFENMPIVYLKQQLVYDSAGKIVDYITVEANPRFEKYFK-SMGE 460

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
            I   G           +D    + +    S                N  N   +   P 
Sbjct: 461 VIGKRGS---------EADPKGFERMCHLYSMVNSTQKELSYQYYYENIGNYFNVILTP- 510

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIIL-S 476
                       +    ++ +    ++ +     +L   L+  +      + E G +L  
Sbjct: 511 -----SKHKGYVDVFCVDNTELAETQQMLRSANHKLSMSLDVANIVPWKWDLEKGTMLCD 565

Query: 477 TNRAVS-----KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
            NR V       +       +    +   + +     +     E+   ++ +  E+  + 
Sbjct: 566 VNRPVELSHDDSMMNEEQLSVPDYQYFAKICKEDRDRVKRAYKELTEGNVSKIREEYRVI 625

Query: 532 STKEE--KLLSLRIIIK---KLPFSSCYSLTMHD--ISEWKQEKNKLSHAKKIAEKESSH 584
             K    +   +        +    +  +L      I+  K+ +  L  AK+ AE+ +  
Sbjct: 626 VRKNGISRYEWVEAQATVDKRDEKGNPITLVGSSLVITGRKKMEEDLITAKEKAEESNRL 685

Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
           KS FLA +SHEIRTPL AI+GFS ++ +            EY N I+ +  L+L +V D+
Sbjct: 686 KSAFLANMSHEIRTPLNAIVGFSSILADTEEQEE----KEEYINIIENNNTLLLQLVGDI 741

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704
           L++SKIESG +   F  + L+    E     QL    + + IR         +  +   +
Sbjct: 742 LELSKIESGTLEFVFSDLDLNALFKEIEESAQLRQKNEAVPIRYIPEMPDCTVNIERNRL 801

Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764
            Q+  N+L+NA+ FT SG  +         + +   V DTG G+   + +     F ++ 
Sbjct: 802 TQVMTNMLNNAMKFTYSGS-VTFGYRLKDTDSLYFYVTDTGCGIEEDKKDTVFGRFVKLD 860

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +      +GTGLGL + +++V+   G   + S P KG+      P
Sbjct: 861 SF----SQGTGLGLSICQSVVENLGGSIGVESEPGKGSTFWFTLP 901


>gi|238761632|ref|ZP_04622607.1| Signal transduction histidine-protein kinase barA [Yersinia
           kristensenii ATCC 33638]
 gi|238700146|gb|EEP92888.1| Signal transduction histidine-protein kinase barA [Yersinia
           kristensenii ATCC 33638]
          Length = 891

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 89/335 (26%), Positives = 149/335 (44%), Gaps = 17/335 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           LF Y +   +  P    +               L   +   +             +++ +
Sbjct: 163 LFAYRLMRDVTGPIRNMVNTVDR-----IRRGQLDSRVEGQMLGELNILKNGINSMAMSL 217

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 218 AAYHEEMQQNIDQATSDLRETLEQMEIQNVELGLAKKRAQEAARIKSEFLANMSHELRTP 277

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+     Q       P   +Y   I RS N +L I+ND+LD SK+E+ K+ L  
Sbjct: 278 LNGVIGFT----RQTLKTSLTPTQTDYLQTIQRSANNLLCIINDVLDFSKLEAEKLVLEH 333

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P  L  A+ E I L+   A+EK + +     N++P  ++ D   ++QI  N+L NAI F
Sbjct: 334 IPFPLRGALDEVIILLAHTAHEKGLELTLHVNNDVPEQVIGDAMRLQQIVTNLLGNAIKF 393

Query: 719 TPSGGQ-IIISTTHTSNEEV--ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T  G   I+++T   + ++V  ++ + DTG+G++  +  +  + F Q   S   R  GTG
Sbjct: 394 TEQGNIDILVATQAKTPQQVTLVVEIHDTGIGISESQQAQLFQAFRQADASISRRHGGTG 453

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           LGL + + +V    G     S   +G+       L
Sbjct: 454 LGLVITERLVKEMGGDISFHSQVDRGSTFRFHLTL 488


>gi|225619868|ref|YP_002721125.1| signal transduction histidine kinase [Brachyspira hyodysenteriae
           WA1]
 gi|225214687|gb|ACN83421.1| Signal transduction histidine kinase [Brachyspira hyodysenteriae
           WA1]
          Length = 579

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 74/363 (20%), Positives = 156/363 (42%), Gaps = 35/363 (9%)

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
           + E  +L  +LE  + GI  +N+   I   N+    L      +I         E     
Sbjct: 232 QTEREKLNYVLENIAQGIIAVNKNKEIFFINQYALDLL-----EISDSNIRKLNEIIKDD 286

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT--MHDISEWK 565
            +   +   +        +        +E  + + I I  +  +   S      D+++ +
Sbjct: 287 DVIEKIDNAIEFSRFSKFDV-------KEHTMDIEISIIPIRNNENISALIKFEDVTDIR 339

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + + +              K DF    SHE++TPLT+IIG+SE++     G        +
Sbjct: 340 KVEIE--------------KQDFFINASHELKTPLTSIIGYSELLIATGGGKN----QAD 381

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           +   I+     + D+V D+L +S+IE+       E + + + V +     ++ + ++ I 
Sbjct: 382 FIKRINNEALRMKDLVIDMLTLSRIEANWKETVDEEIDIKDIVLDVFESNRIKSEQRNID 441

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +     + +  I+A+   + ++  N++ NAI +T   G++ I     ++++ I  V+DTG
Sbjct: 442 VELDIESAV--IMANKEKITEVVNNLVDNAIKYTDDDGKVKIYLK-NNSDKAIFSVKDTG 498

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
            G+    L +  + F ++ N++ ++  GTGLGL + K + +      +I S    GT + 
Sbjct: 499 CGIAPQYLNRVFERFFRVKNNKYLKVHGTGLGLTIVKNICNYYNADIHIKSEENVGTEMT 558

Query: 806 IIF 808
           ++F
Sbjct: 559 VVF 561


>gi|332527416|ref|ZP_08403471.1| PAS protein [Rubrivivax benzoatilyticus JA2]
 gi|332111826|gb|EGJ11804.1| PAS protein [Rubrivivax benzoatilyticus JA2]
          Length = 674

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 101/483 (20%), Positives = 182/483 (37%), Gaps = 53/483 (10%)

Query: 358 DDIEIAGGLSTLLDA--PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR--ENSLAM 413
             +   G    L D   P L  +  +  V L   +   I  +  +            +A 
Sbjct: 50  AALAEGGWQLVLADHSLPGLDFDATLAEVRLRLPEVPVILVTGTIGEELAVDLLRRGVAD 109

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
             +    A   P             +     + +        +I+ +  DG+ +  ++  
Sbjct: 110 FVLKDRMARLIPAIERCLEDVQRRREAARAAQALADSEAFNRTIVGSLGDGLFVA-QDRR 168

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI-TLGS 532
            +  N A+  L GY   D   + F   L   +  + +      L+    +          
Sbjct: 169 FVFVNPALPALLGYDRLDFEGRGFDETLAPESLPLWDERYQARLAPPTPEPERHDDVALL 228

Query: 533 TKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKNKLSHAK-----------KIAE 579
            ++   + + +   +            + D++E ++   +L   +           + AE
Sbjct: 229 HRDGHRVWMELRAARFEHRGRPAVLGLLRDMTERRRIVAELERHRHHLEVLVEERTRKAE 288

Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639
             +  KS FLA +SHEIRTPL AI G   +++ +      +P+     + I R+ + +L 
Sbjct: 289 AANRAKSAFLANMSHEIRTPLNAITGMVHLLQRE-----ASPQQQRSLSVIARAVDHLLS 343

Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA 699
           +VND+LD+SKIESGK+ L     +LDE +  A  LV   A EK + +         R+  
Sbjct: 344 LVNDVLDLSKIESGKLTLETVDFALDEVLERARGLVADLAAEKHLTLSVDNRAAGARLRG 403

Query: 700 DLRSVKQIALNILSNA------------IHFTPSGGQIIISTTHTSNE----EVILRVRD 743
           D                           + FT  G +I ++    ++E     ++L V D
Sbjct: 404 DPTR------------LAQLLLNLLGNAVKFTDRG-EIRLTCAVDASEAAAPRLLLEVSD 450

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TG+G+    L +   PF Q  +S   R  GTGLGL + + +V+   G+  + S P +G+ 
Sbjct: 451 TGIGIEAARLAQLFAPFQQADSSTTRRFGGTGLGLAICRHLVELMHGRIDVRSVPGQGST 510

Query: 804 IEI 806
             I
Sbjct: 511 FCI 513



 Score = 44.6 bits (104), Expect = 0.068,   Method: Composition-based stats.
 Identities = 28/240 (11%), Positives = 54/240 (22%), Gaps = 29/240 (12%)

Query: 94  YLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY----GKTTL 149
               ++  LP  +G       G    +      +   +          T          L
Sbjct: 168 RFVFVNPALPALLGYDRLDFEGRGFDETLAPESLPLWDERYQARLAPPTPEPERHDDVAL 227

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
              +G    V ++L A     R R        G++          A  +R       L E
Sbjct: 228 LHRDGH--RVWMELRAARFEHRGRPAV----LGLLRDMTERRRIVAELERHRHHLEVLVE 281

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
            +                +      R K+   +   +         T    LL  E S  
Sbjct: 282 ER---------------TRKAEAANRAKSAFLANMSHEIRTPLNAITGMVHLLQREASPQ 326

Query: 270 PEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKC 329
            +     ++++           + +    S          ++    DE        V   
Sbjct: 327 QQ----RSLSVIARAVDHLLSLVNDVLDLSKIESGKLTLETVDFALDEVLERARGLVADL 382


>gi|159026319|emb|CAO88896.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 641

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 84/277 (30%), Positives = 140/277 (50%), Gaps = 10/277 (3%)

Query: 548 LPFSSCYSLTMHDISEWKQEK-NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
           +   +  + ++ ++ E  +    ++  +++ AE  S  K+ FLA  SHE+RTPL  IIG 
Sbjct: 357 IREINQLASSLEEMLERLRLWGEEIVKSRQEAENASQLKNQFLANTSHELRTPLNGIIGS 416

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
              + +            EY    D++   +L+I++D+L I+KIE+GK+++  EPV L +
Sbjct: 417 IRCVMDGFCN--SEEEEKEYLQQADKAAVHLLEIIDDILSIAKIEAGKLSVDPEPVDLHQ 474

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726
            ++E +SL       K + +   F    P + AD   +KQ+ LN++SN+I FT +G  I 
Sbjct: 475 IINEVVSLQTASLQGKHLKLNLLFCPENPIVYADPTKLKQVILNVISNSIKFTETG-TIS 533

Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
           + T      + I+ + DTG+G+   +  K  +PF  I  S   +  GTGLGL ++K  + 
Sbjct: 534 LITHLE-YPQAIITIVDTGIGIDPQQQLKLFRPFVMIDGSTTRKFSGTGLGLAISKNFMK 592

Query: 787 ANMGKFYIFST-PAKGTLIEIIFPLYDT----SHPHD 818
              G   I S     GT +EII PL       S P +
Sbjct: 593 VMGGDITISSQGQGLGTTVEIILPLVGEKKLDSTPEE 629


>gi|115523991|ref|YP_780902.1| periplasmic sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris BisA53]
 gi|115517938|gb|ABJ05922.1| signal transduction histidine kinase [Rhodopseudomonas palustris
           BisA53]
          Length = 545

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 103/249 (41%), Positives = 155/249 (62%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I E +Q K     A+  AE  +  KS FLA++SHE+RTPL AI+GFSEV+K++ FG    
Sbjct: 251 IGELEQAKAISDEARHRAEAANVAKSRFLAQMSHELRTPLNAILGFSEVMKSEIFGAHAV 310

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
             Y +Y+  I  SG  +L+++N++LD+S+IE+G+  L+ E VSL   V++   L++L A+
Sbjct: 311 AVYKDYSADIHNSGVHLLNLINEILDLSRIEAGRYELNEEAVSLVHVVADCHHLLKLRAS 370

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
            + I I   F   +PRI AD R+ +QI LN+LSN+I FTP GG+I +    T++    L 
Sbjct: 371 NRGITIHEVFEQGMPRIWADERAARQIVLNLLSNSIKFTPQGGEIWLKVGWTASGGQYLS 430

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V+DTG G+   E+   +  FGQ  NS +   +G GLGLP+AK+++D + G F + S    
Sbjct: 431 VKDTGSGIAEDEIPIVLASFGQGSNSIKSAEQGAGLGLPIAKSLIDMHGGTFTLKSKLRI 490

Query: 801 GTLIEIIFP 809
           GT + + FP
Sbjct: 491 GTEVIVTFP 499


>gi|295402033|ref|ZP_06811994.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|294975924|gb|EFG51541.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus thermoglucosidasius C56-YS93]
          Length = 456

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 57/227 (25%), Positives = 109/227 (48%), Gaps = 5/227 (2%)

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
             +++FLA +SHE+RTPLT + G++++ +    G         Y + I      +  +V 
Sbjct: 233 KERNEFLASISHELRTPLTYVKGYADIARRPNMG---EEERNRYLSIIYEEAEHMQKLVK 289

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702
           DL +++K++     +H E  +L     +    +Q     K++ +      +I  +  D +
Sbjct: 290 DLFELAKMDQHSFQIHKELTNLCSFFKKLHDKMQPAFQAKKMSLVYYCDGSI-TVHIDQK 348

Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
             +Q+ +N+L NA+ ++  G  + I      +  +++ V D G G+   +L    + F +
Sbjct: 349 RFEQVMMNLLDNALKYSDQGSIVSIDVRKEKH-HIVIIVSDEGRGIPKEDLPHIFERFYR 407

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +  S+     GTGLGL + K +V+A+ G  Y  S   KGT + I  P
Sbjct: 408 VDKSRSRTSGGTGLGLAIVKEIVEAHGGAIYAASEYGKGTNMIITLP 454


>gi|228925838|ref|ZP_04088922.1| hypothetical protein bthur0010_5640 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228833853|gb|EEM79406.1| hypothetical protein bthur0010_5640 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 463

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 56/226 (24%), Positives = 110/226 (48%), Gaps = 5/226 (2%)

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
            +S+FLA V+HE+RTPLT + G++++   +   P    + + Y + I    + + ++V D
Sbjct: 234 ERSEFLASVAHELRTPLTYVRGYADIALKESTSP---EQRLRYLSIIKDESDYITNLVQD 290

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703
           L  ++++E    ++  + V L   ++  +  V     E+ I +  S    +  +  D + 
Sbjct: 291 LFSLAQMEQHNFSIQVKEVHLHTFLTRIVEKVNAMYKERYITVSFSCPPTLL-VNLDEQR 349

Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
            +Q+ +NIL+NA   +    QI IS     N+ + + + D G G+   +L    + F ++
Sbjct: 350 FEQVVMNILNNAYRHSKEHSQIHISV-IEENKRISITMEDEGEGIPPEDLPHIFERFYRV 408

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             ++     GTGLGL + K +V+ + G   + S    G+   I  P
Sbjct: 409 DKARSRATGGTGLGLSIVKEIVELHGGTITVTSEVDHGSCFTISLP 454


>gi|146299730|ref|YP_001194321.1| PAS/PAC sensor signal transduction histidine kinase [Flavobacterium
           johnsoniae UW101]
 gi|146154148|gb|ABQ05002.1| PAS/PAC sensor signal transduction histidine kinase [Flavobacterium
           johnsoniae UW101]
          Length = 555

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 86/367 (23%), Positives = 165/367 (44%), Gaps = 25/367 (6%)

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
           K+  E  +L +++   +D I  ++ EGI+L  N    K+ G   EDI+ KP +     N 
Sbjct: 208 KLLFEKKRLETLINNMNDPIIGLDNEGIVLFVNDEALKIIGLKSEDIIGKPASELAVSND 267

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDI 561
             ++   + +      +Q L+    G     +     I I              + + +I
Sbjct: 268 --LIRSLILKESETPKKQPLKIFAHGKESYFEKEIHNITITPTGEEKEINIGDVIILRNI 325

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           + +K+                  K++F+A VSHE++TP+ +I    ++++N + G + N 
Sbjct: 326 TLFKELDF--------------AKTNFIATVSHELKTPIASIKLSLQLLENGKTGDM-ND 370

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
              +    I      +L I  +LL++S++E+G + L+    +  E V  A+  V++ A++
Sbjct: 371 DQKQLVESIKDDSQRLLKITGELLNLSQLETGNIQLNIGKSNPHEIVKYAVEAVKVQADQ 430

Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
           K+I +      N+  + AD      + +N LSNAI ++     I+I      N++++ +V
Sbjct: 431 KQIQLIVDANENLKNVKADAEKTGWVLINYLSNAIRYSSEKSTILIKLK-EENDQMVFQV 489

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            DTG G+     +K    + Q+P S   +  GTGLGL ++K  ++A  G   + S    G
Sbjct: 490 IDTGKGIDTRYKDKVFDKYFQVPGS---QKSGTGLGLAISKEFIEAQNGNVGVESNLGLG 546

Query: 802 TLIEIIF 808
           +      
Sbjct: 547 STFWFSL 553



 Score = 38.9 bits (89), Expect = 3.7,   Method: Composition-based stats.
 Identities = 8/39 (20%), Positives = 19/39 (48%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHI 127
           +D  G +  +++E  K IG  +  +IG    +++    +
Sbjct: 230 LDNEGIVLFVNDEALKIIGLKSEDIIGKPASELAVSNDL 268


>gi|46581464|ref|YP_012272.1| sensory box histidine kinase [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46450886|gb|AAS97532.1| sensory box histidine kinase [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|311235116|gb|ADP87970.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfovibrio vulgaris RCH1]
          Length = 764

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 93/600 (15%), Positives = 192/600 (32%), Gaps = 56/600 (9%)

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN-SKESFEYLSHRNHPSLSA 313
                   + +  S+P  E  H          +     +   +             S   
Sbjct: 182 DRIAQGDFSYDVRSIPHVELSHIAENFARMAHEVELRERELHAINDRLQQEIAVRRSAEE 241

Query: 314 YFDEGENLTPETVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                E      V       + +       Y  P +  +  Y+  + +  A         
Sbjct: 242 ALRTSEERYALAVRGTSDGIWDWDLRTGDVYFAPRWKSIIGYEDHE-LPNAISTWKDNVH 300

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
           P              R +        R+   +    +   +        ++    +   G
Sbjct: 301 PDDMPRVIEANESCMRREVPEFQVEYRM---RHKDGSWCWVLGRGAAIWDEQGNALRMAG 357

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
              +    +  ++ +      L +++ A    I  +++ G +   N   +   G   E +
Sbjct: 358 AHTDITGWKATEQALREAKNTLDNVINAMPSTIVGLDQHGRVTLWNLTAANDTGLAREQV 417

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
           +       L     + ++  +T  ++      ++K++L     ++   + I+      + 
Sbjct: 418 MGHGLEEVLP--RFAFLSPDVTRCMNEGRTIAMQKVSLPQGVGQRHYDIVILPVVTRGAY 475

Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
              L + D++   + +  +   +K+            A ++HEI  PL  I+  ++ I  
Sbjct: 476 GAVLRIDDVTARMRIEEIMVQTEKML-----SVGGLAAGMAHEINNPLGGILQGAQNIMR 530

Query: 613 QRFGPLGNPR---------------------YIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           +    L   R                      I +   I  SG     IV+++L+     
Sbjct: 531 RIDPTLPANRKAAEESGCDLENLHTYMTSRGIIRFLEGIRESGQRAASIVSNMLEF---- 586

Query: 652 SGKMNLHFEPVSLDEAVSEAISL------VQLYANEKRILIRTSFANNIPRILADLRSVK 705
           S   +  +  V++   V   + L      ++   + + I I   FA ++P +L     ++
Sbjct: 587 SRSSDSRWSRVAIPHLVERTLELAANDYDLKKKYDFRHIEIVQDFAPDLPEVLCMPTEIE 646

Query: 706 QIALNILSNAIHFTPSGGQ------IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKP 759
           Q+ LN+  NA    P  GQ      I +       + + L V D G GM      +  +P
Sbjct: 647 QVLLNLFKNAAQAMPERGQRADAPRITVRGALE-GDRIRLDVADNGPGMVEDVRRRVFEP 705

Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMV-DANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
           F    N     GEGTGLGL ++  ++   + G F + S P  GT+  I  PL     P +
Sbjct: 706 FYTTKN----VGEGTGLGLSVSYFIITTNHGGSFSVQSEPGSGTMFSIRLPLTQPGMPRN 761



 Score = 40.0 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 13/236 (5%), Positives = 46/236 (19%), Gaps = 12/236 (5%)

Query: 96  KEISEELPKTIGNYAFKM--IGMRLCDVSDILHIDPNNHIGDLLKRQN--TWYGKTTLWP 151
              +      IG    ++        D      +       +   R+    +  +  +  
Sbjct: 271 VYFAPRWKSIIGYEDHELPNAISTWKDNVHPDDMPRVIEANESCMRREVPEFQVEYRMRH 330

Query: 152 IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIK 211
            +G+  +  +      I+         R  G               +       ++    
Sbjct: 331 KDGS--WCWVLGRGAAIWDEQGN--ALRMAGAHTDITGWKATEQALREAKNTLDNVINAM 386

Query: 212 KGHSSVEKEKYDIFSQQ--SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL 269
                   +   +      +       + +V               +       +E  ++
Sbjct: 387 PSTIVGLDQHGRVTLWNLTAANDTGLAREQVMGHGLEEVLPRFAFLSPDVTRCMNEGRTI 446

Query: 270 PEQEDFHTINLNQYTKKQYFGTL--QNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
             Q+      + Q         +  +                 +     + E +  
Sbjct: 447 AMQKVSLPQGVGQRHYDIVILPVVTRGAYGAVLRIDDVTARMRIEEIMVQTEKMLS 502


>gi|197106645|ref|YP_002132022.1| sensor histidine kinase/response regulator [Phenylobacterium
           zucineum HLK1]
 gi|196480065|gb|ACG79593.1| sensor histidine kinase/response regulator [Phenylobacterium
           zucineum HLK1]
          Length = 589

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 77/241 (31%), Positives = 127/241 (52%), Gaps = 10/241 (4%)

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
           ++ A   +  KS FL+ V+HE+RTP+  ++G +  ++     P    R  EYA+ I RSG
Sbjct: 205 ERRANDANEAKSAFLSMVTHELRTPMNGVMGMARALQQTDLSP----RQREYADTIVRSG 260

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
           + +L I+ND+LD SKIE+G+++L   P +L     +++ L    A  K + +       +
Sbjct: 261 DGLLAILNDVLDHSKIEAGRLDLEVAPFNLRAVSQQSLQLWTEAAAAKGLELDCDIDPEL 320

Query: 695 P-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS----NEEVILRVRDTGVGMT 749
           P  +L D   V+QI LN+LSNA+ FT +G ++ ++            V + V DTG GMT
Sbjct: 321 PAHVLGDETRVRQIILNLLSNALKFTEAG-RVALALRRAPHADGEGGVEILVSDTGPGMT 379

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             ++ +  +P+ Q   S   R  GTGLGL +   +     G+  + S P +G+   +  P
Sbjct: 380 AEQVARLFRPYSQAEASTARRFGGTGLGLSICHRLSTMMGGEIGVESEPGRGSTFRVWLP 439

Query: 810 L 810
           L
Sbjct: 440 L 440


>gi|327540026|gb|EGF26622.1| sensor signal transduction multi-kinase [Rhodopirellula baltica WH47]
          Length = 1976

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 137/671 (20%), Positives = 224/671 (33%), Gaps = 57/671 (8%)

Query: 169  YSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS-HLHEIKKGHSSVEKEKYDIFSQ 227
            Y                    +     L + L          + KG     +E++     
Sbjct: 991  YQATGNIIDVWARSTNGDIPEEIIENELARDLADSQRMSQVLLAKGVREFYQERFSEAVG 1050

Query: 228  QSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ-----EDFHTINLNQ 282
                     ++   S T             +  L TS   S   +     E         
Sbjct: 1051 SFSRAIAVAEDTRVSNTYVSPAYPWRCTAMRRQLETSIPRSTQRRWKSIGELGRATKKAV 1110

Query: 283  YTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLF 342
               KQ+   + +  +E   YL+       S    +      E           ++   + 
Sbjct: 1111 AVSKQFTNEIPHAYRERGAYLALAGKLRASQACFQKSLQVAE----AQGAMVAHAKTMIL 1166

Query: 343  YANPSFLLLTKYKSVDDIEIAGGLSTL--------------LDAPKLSDNNAIKPVMLYR 388
            +A  +                G LS L              L     S   + + +    
Sbjct: 1167 FAEYAAEFGWPIDGDAIEHARGTLSELECSDYDVNEGGSLSLVNRFDSLLASGRRIATSV 1226

Query: 389  SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
                      R  T     E    +T    E+ +  P  MP +     +VD        +
Sbjct: 1227 LPEQIYQEVRRAATKILRGEQVFLITRTEDERLSTVPAGMPFDPAIVNEVDRTRQTVVAD 1286

Query: 449  IEVMQLCSILEATSDGIAIINREGII----LSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            +E         A S+GI    ++G      +  N           E          +   
Sbjct: 1287 VE--------NAVSNGI-TTTKQGTFLCSPVDVNDQTLSYLYVSNERFSNLYDDDEIRIA 1337

Query: 505  TP--SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
                S     + +  S    Q L         E            +  S    LT   ++
Sbjct: 1338 DYLTSAAGAAMEKANSFQQLQDLNLNLEKKVHER-------TESVVRHSKELELTAQQLT 1390

Query: 563  EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
              K    KL  AK  AE+ +  KS+FLAR+SHEIRTP+T I+GF+E++         +  
Sbjct: 1391 ATK---EKLQIAKTAAEEANQAKSEFLARMSHEIRTPITGILGFTELLLRGVV--TDDAE 1445

Query: 623  YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
               +   I  +G  +L ++ND+LDISKIE+ K+       +    V + I+ ++  A EK
Sbjct: 1446 RESHLQTIHSNGFHLLHLLNDILDISKIEADKIETERVLCNPSWMVQDVIASLRSKAIEK 1505

Query: 683  RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----V 737
             I +     +  P  I +D   ++QI  N+ SNAI FT  GG + IS +   + E    +
Sbjct: 1506 DISLEIQVESEFPEEIYSDPTRLRQILTNLTSNAIKFTNQGG-VTISISAIGSGETASKM 1564

Query: 738  ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
             + V+D+G+GMT  +     +PF Q   S      GTGLGL ++K + +A  G   + S 
Sbjct: 1565 KIAVQDSGIGMTQEQTAFIFEPFKQADVSTTREYGGTGLGLSISKRLAEALDGTLEVESE 1624

Query: 798  PAKGTLIEIIF 808
               GT + + F
Sbjct: 1625 RGVGTQMILNF 1635


>gi|254561745|ref|YP_003068840.1| sensor hybrid histidine kinase with multiple PAS and response
           regulator receiver domains [Methylobacterium extorquens
           DM4]
 gi|254269023|emb|CAX24984.1| sensor hybrid histidine kinase with multiple PAS and response
           regulator receiver domains [Methylobacterium extorquens
           DM4]
          Length = 903

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 97/667 (14%), Positives = 206/667 (30%), Gaps = 86/667 (12%)

Query: 190 DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH 249
            +        ++     ++  +        + +              +   +      A 
Sbjct: 92  VDAAPEGKLVVEDNGRMIYANEAYMRLAGGDSFSNLRSIERIFVGAPEVSEAVYRLAQAS 151

Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
           +DD    E+  +      +      ++ I +    + +    L       +      +  
Sbjct: 152 RDDRAYAEEIRMSPPPGGAADRDFAWYRIAVRPIPRHRGSAAL-------WTVSDITHER 204

Query: 310 SLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYK-------SVDDIE 361
                  +      + +D  P  F  + + G++ Y N +      Y         +  +E
Sbjct: 205 ERQENVFQELQHAIDYLDHAPAGFLSIDAAGSIVYMNATLASWLGYDLATVGSGGLKLLE 264

Query: 362 IAGGLSTLLDAPKLSDNNAIKP--VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
           IA G   L  +P L          + L R +   +                  +      
Sbjct: 265 IAPGADMLTASPGLPGEVRTDRYDIDLRRRNGQPLPTR---------------LYHRVAY 309

Query: 420 KANQFPENMPQNGIEP-EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
             +  P       +      D    +R  E+ + +    L  +   IA ++R+G ++  N
Sbjct: 310 GQDGAPGPSRTFVLNRSAGSDADEPQRAAEVRLARF---LNNSPIAIATLDRDGRVIRAN 366

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE-------KITLG 531
            +  +LF         +      +      +      ++   L +               
Sbjct: 367 TSFVRLFAGMPRQPAAEGGRDAPDPMMRDAVLERDRGVIEGALARAANGFGGLDPIEVGL 426

Query: 532 STKEEKLLSLRIII---------------KKLPFSSCYSLTMHDISEWKQEKNKLSHAKK 576
           S   ++   + +                           L   D +  +Q + +++  +K
Sbjct: 427 SGPGDRSARVWMSPADSDGTPSPDAEARAGSDGDHERVILYALDTTAQRQLEQQVAQTQK 486

Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
           +              ++H+    L AIIG+S+++              +    I ++ N 
Sbjct: 487 MDTV-----GQLAGGIAHDFNNVLQAIIGYSDLLLASHR---PTDHAFQDIMQIKQNANR 538

Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696
              +V  LL  S+    +  L  E + + EA+S+   L       +R+ +       I  
Sbjct: 539 AASLVRQLLAFSR----RQTLRPEVMDVGEALSDLTLL-LKRLLGERVQLDFRHGREIWP 593

Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTT-----------HTSNEEVILRVRDTG 745
           I AD+   +Q+ +N+  NA    P GG + I T              + + V++ V DTG
Sbjct: 594 IKADVNQFEQVIVNLAVNARDAMPGGGSLTIRTANCPVDGERPVGIPAGDHVMIEVTDTG 653

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
            G+     +K  +PF          G+GTGLGL     +V+ + G   + ST  +GT   
Sbjct: 654 EGIPPEVRQKIFEPFFTTK----EIGKGTGLGLSTVFGIVNQSGGAIDVQSTVGEGTTFR 709

Query: 806 IIFPLYD 812
           I  P ++
Sbjct: 710 IYLPRHE 716



 Score = 65.4 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 51/464 (10%), Positives = 119/464 (25%), Gaps = 33/464 (7%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDV--SDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           +G +   +E   +  G  +F  +   +  +        +    +    +    +  +  +
Sbjct: 105 NGRMIYANEAYMRLAGGDSFSNL-RSIERIFVGAPEVSEAVYRLAQASRDDRAYAEEIRM 163

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
            P  G           + +    R       + +  +         + + L     +L  
Sbjct: 164 SPPPGGAADRDFAWYRIAVRPIPRHRGSAALWTVSDITHERERQENVFQELQHAIDYLDH 223

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHL--RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
              G  S++     ++   +    L   +    S   +              P L  E  
Sbjct: 224 APAGFLSIDAAGSIVYMNATLASWLGYDLATVGSGGLKLLEIAPGADMLTASPGLPGEVR 283

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKE----SFEYLSHRNHPSLSAYFDEGENLTP 323
           +     D    N      + Y                  L+              E    
Sbjct: 284 TDRYDIDLRRRNGQPLPTRLYHRVAYGQDGAPGPSRTFVLNRSAGSDADEPQRAAEVRLA 343

Query: 324 ETVDKCPIPFF-VYSHGNLFYANPSFLLLT--KYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
             ++  PI    +   G +  AN SF+ L     +             ++    L  +  
Sbjct: 344 RFLNNSPIAIATLDRDGRVIRANTSFVRLFAGMPRQPAAEGGRDAPDPMMRDAVLERDRG 403

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
           +    L R+             +    + S  +   P   ++  P    +     +    
Sbjct: 404 VIEGALARAANGFGGLDPIEVGLSGPGDRSARVWMSPA-DSDGTPSPDAEARAGSDGDHE 462

Query: 441 RI--------NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
           R+         +R++E +V Q   + +            GI    N  +  + GY    +
Sbjct: 463 RVILYALDTTAQRQLEQQVAQTQKM-DTVGQL-----AGGIAHDFNNVLQAIIGYSDLLL 516

Query: 493 L-RKPFTVFLEQNTP-----SVMNHYLTEILSLDLRQTLEKITL 530
              +P     +         +     + ++L+   RQTL    +
Sbjct: 517 ASHRPTDHAFQDIMQIKQNANRAASLVRQLLAFSRRQTLRPEVM 560



 Score = 45.0 bits (105), Expect = 0.054,   Method: Composition-based stats.
 Identities = 34/330 (10%), Positives = 68/330 (20%), Gaps = 25/330 (7%)

Query: 79  IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK 138
                 F  +IDA G +  ++  L   +G     +    L  +      D       L  
Sbjct: 222 DHAPAGFL-SIDAAGSIVYMNATLASWLGYDLATVGSGGLKLLEIAPGADMLTASPGLPG 280

Query: 139 RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
              T      L    G    +P  L     Y ++      R F +       +D     +
Sbjct: 281 EVRTDRYDIDLRRRNG--QPLPTRLYHRVAYGQDGAPGPSRTFVLNR--SAGSDADEPQR 336

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP-------------------PPHLRMKNK 239
             + + +          +       +    +                     P   M++ 
Sbjct: 337 AAEVRLARFLNNSPIAIATLDRDGRVIRANTSFVRLFAGMPRQPAAEGGRDAPDPMMRDA 396

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
           V                  +  L   E  L    D                +    ++  
Sbjct: 397 VLERDRGVIEGALARAANGFGGLDPIEVGLSGPGDRSARVWMSPADSDGTPSPDAEARAG 456

Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDD 359
            +    R          + +        +        + G     N     +  Y  +  
Sbjct: 457 SDGDHERVILYALDTTAQRQLEQQVAQTQKMDTVGQLAGGIAHDFNNVLQAIIGYSDL-L 515

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389
           +                  NA +   L R 
Sbjct: 516 LASHRPTDHAFQDIMQIKQNANRAASLVRQ 545


>gi|226227766|ref|YP_002761872.1| phosphate regulon sensor protein PhoR [Gemmatimonas aurantiaca
           T-27]
 gi|226090957|dbj|BAH39402.1| phosphate regulon sensor protein PhoR [Gemmatimonas aurantiaca
           T-27]
          Length = 479

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 86/486 (17%), Positives = 175/486 (36%), Gaps = 35/486 (7%)

Query: 329 CPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEI-AGGLSTLLDAPKLSDNNAIKPVMLY 387
                 V     +     +   +    S    +     +   +     +       +   
Sbjct: 18  LMAIVLVTVERRVTERVRAEGPIAGATSAQSSDEMLAAIRRDIVIAGFAALLVGVVLAQV 77

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
            +                    +  +T  P  +          + +           + +
Sbjct: 78  LARPVARPIE--ELRDVARGLAAGDLTQRPSHEIAGGEVGDLADALRLLAEQLDARLQLL 135

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
             E   L ++ E+ ++G+A ++    ++  N    +L                +      
Sbjct: 136 HAEEALLVALTESLNEGVAAVDARQRVVRINETGRQLLRLKEP----------VPFPADY 185

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQE 567
           +    +                     +++ LSL              L ++D++  ++ 
Sbjct: 186 LPRERMLREALAAALAGTIAAPSEIRVDDRTLSLTARPLP---DGGAVLALYDLTPVRRL 242

Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
           +                + DF+A VSHE+RTPLT I GF E +++++  P       ++ 
Sbjct: 243 EAV--------------RRDFVANVSHELRTPLTVIGGFVETLQDEQLPP---ELRTQFL 285

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
             +D S   +  IV+DLLD+S+IESG    +   + +    +E I+ ++  A  K + + 
Sbjct: 286 QMVDASVRRMQRIVDDLLDLSRIESGGWLPNPIELDVAVLAAEIIAPLERPAAAKGVALH 345

Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747
              A    R+ AD  + +QI  N+  NA+  TP+G  + +  +      V + VRDTGVG
Sbjct: 346 VEIAPGAERVYADPTAARQILTNLAENALRHTPTGS-VTLLASPAEGG-VWIGVRDTGVG 403

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           +    L +  + F +   ++     GTGLGL + + + +A+ G+    ST   GT I+  
Sbjct: 404 IGAEHLPRIFERFYRADPARSREAGGTGLGLSIVRHLTEAHGGRVRADSTLHVGTTIQAW 463

Query: 808 FPLYDT 813
            P  ++
Sbjct: 464 LPKAES 469


>gi|57234865|ref|YP_181053.1| sensory box sensor histidine kinase [Dehalococcoides ethenogenes
           195]
 gi|57225313|gb|AAW40370.1| sensory box sensor histidine kinase [Dehalococcoides ethenogenes
           195]
          Length = 425

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 87/389 (22%), Positives = 170/389 (43%), Gaps = 25/389 (6%)

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGI------ILSTNRAVSKLFGYPVEDI 492
           + +  K   +    +  +I + +SD I I   +G       I+  N A  K FGY   ++
Sbjct: 49  EQKSQKLNCQKLYRKYKTIFDLSSDPIVIAEVKGTGPHDRMIVEINEAAIKHFGYSRSEL 108

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
           L    +          +  ++   ++ +     E   L        + +      +  S 
Sbjct: 109 LMHDTSFLHPPEEVDALLSWVGTEMNKNHHVFFEAKHLRKDGNVLDVEIHATQIAIDNSP 168

Query: 553 CYSLTMHDISEWKQEK-------NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
                + DISE K  +             +   E +   +++F   + HE++TPLT I+ 
Sbjct: 169 ISIAVIRDISERKSLEKRAIKLHQAEQKFRIELESQIYQRTEFYKALVHELKTPLTPIVL 228

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
            SE++++   G     ++ + A+ I  S   +L  +N+L D++K E G + ++   +SL 
Sbjct: 229 NSEMLEDNLEG-----KHKKLADNIKLSSLELLARINELYDMAKGEVGTLQINRTWISLF 283

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725
           + ++E  S++    N K++ +   F  ++P + AD   +KQ+ +N+L+NAI F+    +I
Sbjct: 284 DLINEIASVLSPSLNSKQLRLHLFFRPHLPPVYADQNRLKQVLVNLLNNAITFSLPKNKI 343

Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
            +         V + + D G G++  +L K  KP+    +       G GLGL L+K ++
Sbjct: 344 TMICGFNQK-YVTIEIMDEGTGISEDDLHKLFKPYVLTKSD------GLGLGLALSKKII 396

Query: 786 DANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           + + GK  + S    G+   II P  +T 
Sbjct: 397 ELHSGKIRVKSIKDTGSKFSIILPANNTD 425


>gi|73749191|ref|YP_308430.1| sensor histidine kinase [Dehalococcoides sp. CBDB1]
 gi|73660907|emb|CAI83514.1| sensor histidine kinase [Dehalococcoides sp. CBDB1]
          Length = 438

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 73/349 (20%), Positives = 145/349 (41%), Gaps = 16/349 (4%)

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--NTPSVMNHYLTEILSLDLRQTLEKITLG 531
           I+  N+A ++  GY  +   +            T    +    ++ +    +        
Sbjct: 83  IVEVNKAFTQTMGYTKKQATQLTVYDIENDKKWTMEQTHELFEKMQTCRKGRVTRFERPH 142

Query: 532 STKEEKLLSLRI--IIKKLPFSSCYSLTMHDISEWKQEKNKLS--HAKKIAEKESSHKS- 586
            T   K + + I   I K+  +        DIS+ K+ + ++   +  +     +  K  
Sbjct: 143 FTSAGKTIPVEIKSRILKIDNNEYIMTVARDISDRKKLEAEMQRSYLSEKRHAANLQKEI 202

Query: 587 ----DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
               +F   + HE++TPLT I+  SE +              E A  I R    +   +N
Sbjct: 203 HTRIEFTRCLVHELKTPLTPILASSEALVKMEPAKTI---QGELARNIHRGACGLNVRIN 259

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702
           +LLD++++E  ++ L    V  +  + E ++ ++     +   I      ++P I AD  
Sbjct: 260 ELLDLARLEISELVLRKSMVLPNRIIEEVVAEMKQQLIARGQNIDLHIPADLPVICADPE 319

Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
            +KQI  N+L+NA+ +    G+I +         + + V+D G G+T    +   +P+ +
Sbjct: 320 RLKQILRNLLNNAVKYNKDNGRIFLEAKIAD-GFIKIDVKDQGKGITQKNQKHLFQPYFR 378

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
               +  + +G GLGL L+K++V+ + G   + S   KGT +    PL 
Sbjct: 379 CEEDRS-KMDGLGLGLFLSKSLVELHKGTIELQSKRGKGTTVSFKLPLS 426


>gi|301308093|ref|ZP_07214047.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
 gi|300833563|gb|EFK64179.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
          Length = 882

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 86/367 (23%), Positives = 154/367 (41%), Gaps = 23/367 (6%)

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           I+      I  I  +  +   N      F   + +       +      P      + + 
Sbjct: 405 IMNNIQASIYFIKPDYTVKWRN---EVEFHDCIPEFGPANCFLVKNGVKPYCTRCTVAKA 461

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM--HDISEWKQEKNKLSHA 574
           +    +  +         + K L +          +   +     D+++ KQ +N+L  A
Sbjct: 462 METKKQVDITNEF----GDGKYLHILANPVLDEHDNLIGVIFKKEDVTKQKQAENELRKA 517

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
           K+ AE+    KS FLA +SHEIRTPL AI+GFS ++              EY N I+ + 
Sbjct: 518 KEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSGLLA----VTENMEDKEEYINIINSNN 573

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
           +L+L ++ND+LD++KIE+G +      V +++  S+     +L A +  + +        
Sbjct: 574 DLLLQLINDILDLAKIEAGTLEFVDSDVDVNQLFSDIEQSSRLKAQD-GVQVCFVEKIPN 632

Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELE 754
             +  D   V Q+  N ++NAI FT  G  I+    H  + E+   V+DTG G+   ++ 
Sbjct: 633 CILRTDRNRVSQVITNFINNAIKFTTQGS-ILFGYRHRDD-ELYFYVKDTGCGIAKDKIG 690

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP---LY 811
           +    F ++ +      +GTGLGL + + ++    G   + S   KG+      P   L 
Sbjct: 691 QVFTRFVKLNSF----VQGTGLGLSICQMIIKRLGGDIGVESEQGKGSTFWFTLPYSILE 746

Query: 812 DTSHPHD 818
               PH+
Sbjct: 747 MQEVPHE 753


>gi|298374421|ref|ZP_06984379.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_19]
 gi|298268789|gb|EFI10444.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_19]
          Length = 882

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 86/367 (23%), Positives = 154/367 (41%), Gaps = 23/367 (6%)

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           I+      I  I  +  +   N      F   + +       +      P      + + 
Sbjct: 405 IMNNIQASIYFIKPDYTVKWRN---EVEFHDCIPEFGPANCFLVKNGVKPYCTRCTVAKA 461

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM--HDISEWKQEKNKLSHA 574
           +    +  +         + K L +          +   +     D+++ KQ +N+L  A
Sbjct: 462 METKKQVDITNEF----GDGKYLHILANPVLDEHDNLIGVIFKKEDVTKQKQAENELRKA 517

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
           K+ AE+    KS FLA +SHEIRTPL AI+GFS ++              EY N I+ + 
Sbjct: 518 KEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSGLLA----VTENMEDKEEYINIINSNN 573

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
           +L+L ++ND+LD++KIE+G +      V +++  S+     +L A +  + +        
Sbjct: 574 DLLLQLINDILDLAKIEAGTLEFVDSDVDVNQLFSDIEQSSRLKAQD-GVQVCFVEKIPN 632

Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELE 754
             +  D   V Q+  N ++NAI FT  G  I+    H  + E+   V+DTG G+   ++ 
Sbjct: 633 CILRTDRNRVSQVITNFINNAIKFTTQGS-ILFGYRHRDD-ELYFYVKDTGCGIAKDKIG 690

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP---LY 811
           +    F ++ +      +GTGLGL + + ++    G   + S   KG+      P   L 
Sbjct: 691 QVFTRFVKLNSF----VQGTGLGLSICQMIIKRLGGDIGVESEQGKGSTFWFTLPYSILE 746

Query: 812 DTSHPHD 818
               PH+
Sbjct: 747 MQEVPHE 753


>gi|262382637|ref|ZP_06075774.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
 gi|262295515|gb|EEY83446.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
          Length = 882

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 86/367 (23%), Positives = 154/367 (41%), Gaps = 23/367 (6%)

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           I+      I  I  +  +   N      F   + +       +      P      + + 
Sbjct: 405 IMNNIQASIYFIKPDYTVKWRN---EVEFHDCIPEFGPANCFLVKNGVKPYCTRCTVAKA 461

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM--HDISEWKQEKNKLSHA 574
           +    +  +         + K L +          +   +     D+++ KQ +N+L  A
Sbjct: 462 METKKQVDITNEF----GDGKYLHILANPVLDEHDNLIGVIFKKEDVTKQKQAENELRKA 517

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
           K+ AE+    KS FLA +SHEIRTPL AI+GFS ++              EY N I+ + 
Sbjct: 518 KEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSGLLA----VTENMEDKEEYINIINSNN 573

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
           +L+L ++ND+LD++KIE+G +      V +++  S+     +L A +  + +        
Sbjct: 574 DLLLQLINDILDLAKIEAGTLEFVDSDVDVNQLFSDIEQSSRLKAQD-GVQVCFVEKIPN 632

Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELE 754
             +  D   V Q+  N ++NAI FT  G  I+    H  + E+   V+DTG G+   ++ 
Sbjct: 633 CILRTDRNRVSQVITNFINNAIKFTTQGS-ILFGYRHRDD-ELYFYVKDTGCGIAKDKIG 690

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP---LY 811
           +    F ++ +      +GTGLGL + + ++    G   + S   KG+      P   L 
Sbjct: 691 QVFTRFVKLNSF----VQGTGLGLSICQMIIKRLGGDIGVESEQGKGSTFWFTLPYSILE 746

Query: 812 DTSHPHD 818
               PH+
Sbjct: 747 MQEVPHE 753


>gi|255012665|ref|ZP_05284791.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_7]
          Length = 882

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 86/367 (23%), Positives = 154/367 (41%), Gaps = 23/367 (6%)

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           I+      I  I  +  +   N      F   + +       +      P      + + 
Sbjct: 405 IMNNIQASIYFIKPDYTVKWRN---EVEFHDCIPEFGPANCFLVKNGVKPYCTRCTVAKA 461

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM--HDISEWKQEKNKLSHA 574
           +    +  +         + K L +          +   +     D+++ KQ +N+L  A
Sbjct: 462 METKKQVDITNEF----GDGKYLHILANPVLDEHDNLIGVIFKKEDVTKQKQAENELRKA 517

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
           K+ AE+    KS FLA +SHEIRTPL AI+GFS ++              EY N I+ + 
Sbjct: 518 KEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSGLLA----VTENMEDKEEYINIINSNN 573

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
           +L+L ++ND+LD++KIE+G +      V +++  S+     +L A +  + +        
Sbjct: 574 DLLLQLINDILDLAKIEAGTLEFVDSDVDVNQLFSDIEQSSRLKAQD-GVQVCFVEKIPN 632

Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELE 754
             +  D   V Q+  N ++NAI FT  G  I+    H  + E+   V+DTG G+   ++ 
Sbjct: 633 CILRTDRNRVSQVITNFINNAIKFTTQGS-ILFGYRHRDD-ELYFYVKDTGCGIAKDKIG 690

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP---LY 811
           +    F ++ +      +GTGLGL + + ++    G   + S   KG+      P   L 
Sbjct: 691 QVFTRFVKLNSF----VQGTGLGLSICQMIIKRLGGDIGVESEQGKGSTFWFTLPYSILE 746

Query: 812 DTSHPHD 818
               PH+
Sbjct: 747 MQEVPHE 753


>gi|188579428|ref|YP_001922873.1| multi-sensor hybrid histidine kinase [Methylobacterium populi BJ001]
 gi|179342926|gb|ACB78338.1| multi-sensor hybrid histidine kinase [Methylobacterium populi BJ001]
          Length = 1381

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 112/803 (13%), Positives = 229/803 (28%), Gaps = 102/803 (12%)

Query: 85   FTWNIDAHGYLKEISEELPKTIGNYA-FKMIGMRLCDVSDILH-IDPNNHIGDLLKRQNT 142
            F    D  G  + ++E   K +G  +  +     L D  +          +   ++    
Sbjct: 462  FIGVADLEGNAEFVNEGGRKLVGLASLEEARRYNLIDYFEPADRPTVLGKVLPAVRESGF 521

Query: 143  WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDN----------- 191
            W G         T   VP+  A  P+   +   +G+    +                   
Sbjct: 522  WEGDLAFRNFS-TGAAVPVHYAIFPVRDAHGSVTGYGT--VTRDLTERRRQESFRDALIT 578

Query: 192  --DPRALGKRLDKKFSHLHEIKKGHSSVEKEKY----------DIFSQQSPPPHLRMK-- 237
              D     +   +  +   EI      +++  Y          +I    + P    +   
Sbjct: 579  FGDRLQACRDTAEMAAVGAEIMARTLGLDRAGYGTVDEAMEHVEIERDWTAPGVASVAGR 638

Query: 238  ---NKVSSLTEYYAHKDD----------VLKTEKYPLLTSEESSLPEQED---------- 274
               ++   +    A   +                 PLL     +L               
Sbjct: 639  HRFDEFGEVRAGLAQGREVVIHDVTTDPRTARNPGPLLAIGVRALINVPVLEQGRIVALF 698

Query: 275  FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF 334
            F      +  +      ++N ++ +   +      +     +E   +  +     P   +
Sbjct: 699  FLHDRQVRDWRTDKLAFIRNIAERTRAAIERFRAEASRRESEEQFRVFAQ---AMPNHVW 755

Query: 335  VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCI 394
                    Y     +      S  +++     S +      +   A    +   +D T  
Sbjct: 756  AADANGALYWFNEQVHAYAGTSAGELDGTAWASIVHPDDVGAAGRAWGAAL---ADGTHY 812

Query: 395  AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
                    I+                       +   G   +  D +    ++E     L
Sbjct: 813  ETE---FRIRRADGAFRWFLVRAEPIHGPNGAVVRWIGTNTDIEDRKQAAAQLERLNENL 869

Query: 455  CSILE-----------ATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
               +E            ++D + +   +  I++ N A + LFG+   D++ + F   +  
Sbjct: 870  EQQVEERTRDRDRMWRLSTDVMLVARFDATIVAVNPAWTTLFGWSEADLVGRSFMDLVHP 929

Query: 504  NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
            +  +       ++    +            K+     L          S       D+  
Sbjct: 930  DDAASTAAAAGDLSDGSVIPRF--ENRYRHKDGSYRWLSWTAVP--DESFIHAVGRDVQA 985

Query: 564  WKQEKNKLSHAKKIAEKES--SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
             ++    L+  ++   +             ++H+    LT I G  E +   R       
Sbjct: 986  EREAAAALALTEEALRQAQKMEAVGQLTGGLAHDFNNLLTGISGSLE-LLQTRMSQGRLT 1044

Query: 622  RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
                Y N    +      + + LL  S+    +  L  +P  ++  V     L++     
Sbjct: 1045 DLDRYINAAQGASKRAAALTHRLLAFSR----RQTLDPKPTDVNALVHGMEDLIR-RTVG 1099

Query: 682  KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT----------- 730
              + I    A  +   L D   ++   LN+  NA    P GG+I I T            
Sbjct: 1100 PAVHIEVVGAAGLWPALVDPPQLENALLNLCINARDAMPEGGRITIETANKWLDDRTARE 1159

Query: 731  --HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                  + + L V DTG GMT   + +A  PF     +    G+GTGLGL +       +
Sbjct: 1160 RELPPGQYLSLCVTDTGTGMTPDVIARAFDPFFTTKPT----GQGTGLGLSMIYGFARQS 1215

Query: 789  MGKFYIFSTPAKGTLIEIIFPLY 811
             G+  I+S   +GT + I  P +
Sbjct: 1216 GGQVRIYSEVGQGTTMCIYLPRH 1238



 Score =  129 bits (325), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 48/496 (9%), Positives = 119/496 (23%), Gaps = 31/496 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            D  G +   +    + +G  A +M+G                   ++ +   T      
Sbjct: 90  TDHEGRVTAWNPGAERILGWSAEEMVGHSAETFFTPEDRAAGRPAEEVRQTAETGRAADE 149

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
            W +             +P+ S      GF    I+             +R+  +   + 
Sbjct: 150 RWHLRKDGTRFWASGEMMPLRSPEGADLGFLK--ILRDRTTATASEGETRRVRDELQVVT 207

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           +      S     +               ++ +S       ++ V +      L     +
Sbjct: 208 DALPVLISFIDHDHVYRFANKHYEA--WFDRPASEILNRPVREVVGEEVYQARLPFMARA 265

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYL---------SHRNHPSLSAYFDEGE 319
           L  ++      +           ++   + +   +               +  A   E E
Sbjct: 266 LAGEDITFDALMPYRGGVTRQSEIRYIPRRTEGGVVDGIFVMVTDIAERQAAQADLREAE 325

Query: 320 NLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
           +     ++      + Y         +     L    + D +                D+
Sbjct: 326 DRLRLALEGAGTGIYDYDLVTGALTWDARTRALFGLSADDPV----SYEGTFLPGVHPDD 381

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
                  +  +             I         +                  G   +  
Sbjct: 382 RERADRAVQAAIGAREGFELEYRVIGRRDGVERLLAARGNTVFR-DGRPDRFVGTVRDIT 440

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRKPF 497
           D R  +            ++E +SD I + + EG     N    KL G   +E+  R   
Sbjct: 441 DARAAEATARRLAA----LVEQSSDFIGVADLEGNAEFVNEGGRKLVGLASLEEARRYNL 496

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE-EKLLSLRIIIKKLPFSS---- 552
             + E      +   +  + ++      E             + +   I  +  +     
Sbjct: 497 IDYFEPADRPTVLGKV--LPAVRESGFWEGDLAFRNFSTGAAVPVHYAIFPVRDAHGSVT 554

Query: 553 CYSLTMHDISEWKQEK 568
            Y     D++E ++++
Sbjct: 555 GYGTVTRDLTERRRQE 570



 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 35/329 (10%), Positives = 85/329 (25%), Gaps = 12/329 (3%)

Query: 257 EKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD 316
              P   +  S+          NL   +                E    ++  S S    
Sbjct: 15  SPIPRAEASPSTNAHDPIGRLPNLPYASVSDVEPRRLGGVVSGTEGECPQDRSSPSQPV- 73

Query: 317 EGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
             + +    VD           G +   NP    +  + + + +       T       +
Sbjct: 74  SYQAIFESAVDFA--IVTTDHEGRVTAWNPGAERILGWSAEEMVGH--SAETFFTPEDRA 129

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
                + V               L             +       +    ++    I  +
Sbjct: 130 AGRPAEEVRQTAETGRAADERWHLR----KDGTRFWASGEMMPLRSPEGADLGFLKILRD 185

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
                 ++ +      +L  + +A    I+ I+ + +    N+     F  P  +IL +P
Sbjct: 186 RTTATASEGETRRVRDELQVVTDALPVLISFIDHDHVYRFANKHYEAWFDRPASEILNRP 245

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS--SCY 554
               + +        ++   L+     T + +        +   +R I ++         
Sbjct: 246 VREVVGEEVYQARLPFMARALA-GEDITFDALMPYRGGVTRQSEIRYIPRRTEGGVVDGI 304

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESS 583
            + + DI+E +  +  L  A+        
Sbjct: 305 FVMVTDIAERQAAQADLREAEDRLRLALE 333



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 46/529 (8%), Positives = 111/529 (20%), Gaps = 52/529 (9%)

Query: 104 KTIGNYAFKMI---GMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVP 160
              G  A   +   G  L  V        +  +   +  +    G    + + G    V 
Sbjct: 357 ALFGLSADDPVSYEGTFLPGVHPDDRERADRAVQAAIGARE---GFELEYRVIGRRDGVE 413

Query: 161 IDLAAL-PIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEK 219
             LAA      R+      R  G V          A  +RL        +          
Sbjct: 414 RLLAARGNTVFRDGRPD--RFVGTVRDITDARAAEATARRLAALVEQSSDFIGVADLEGN 471

Query: 220 EKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSL--PEQEDFHT 277
            ++     +       ++         Y    D        L    ES     +    + 
Sbjct: 472 AEFVNEGGRKLVGLASLEEARRYNLIDYFEPADRPTVLGKVLPAVRESGFWEGDLAFRNF 531

Query: 278 INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI------ 331
                         +++       Y +     +     +   +      D+         
Sbjct: 532 STGAAVPVHYAIFPVRDAHGSVTGYGTVTRDLTERRRQESFRDALITFGDRLQACRDTAE 591

Query: 332 --PFFVYSHGNLFYANPS-------------FLLLTKYKSVDDIEIAGGLST-------L 369
                          + +                      V  +               L
Sbjct: 592 MAAVGAEIMARTLGLDRAGYGTVDEAMEHVEIERDWTAPGVASVAGRHRFDEFGEVRAGL 651

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARL---HTIQWNRENSLAMTFIPFEKANQFPE 426
               ++  ++        R+    +A   R      +               +  +   +
Sbjct: 652 AQGREVVIHDVTTDPRTARNPGPLLAIGVRALINVPVLEQGRIVALFFLHDRQVRDWRTD 711

Query: 427 NMPQNGIEPEDV----DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
            +       E      +    +        Q     +A  + +   +  G +   N  V 
Sbjct: 712 KLAFIRNIAERTRAAIERFRAEASRRESEEQFRVFAQAMPNHVWAADANGALYWFNEQVH 771

Query: 483 KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR 542
              G    ++    +   +  +            L+       E        +       
Sbjct: 772 AYAGTSAGELDGTAWASIVHPDDVGAAGRAWGAALADGTH--YETEFRIRRADGAFRWFL 829

Query: 543 IIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
           +  + +   +     +  T  DI + KQ   +L    +  E++   ++ 
Sbjct: 830 VRAEPIHGPNGAVVRWIGTNTDIEDRKQAAAQLERLNENLEQQVEERTR 878



 Score = 84.3 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 15/147 (10%), Positives = 42/147 (28%), Gaps = 6/147 (4%)

Query: 454 LCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
             +I E+  D  I   + EG + + N    ++ G+  E+++      F      +     
Sbjct: 75  YQAIFESAVDFAIVTTDHEGRVTAWNPGAERILGWSAEEMVGHSAETFFTPEDRAAGRPA 134

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP----FSSCYSLTMHDISEWKQEK 568
             E+                 K+         +  L         +   + D +     +
Sbjct: 135 -EEVRQTAETGRAADERWHLRKDGTRFWASGEMMPLRSPEGADLGFLKILRDRTTATASE 193

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHE 595
            +    +   +  +      ++ + H+
Sbjct: 194 GETRRVRDELQVVTDALPVLISFIDHD 220


>gi|302670459|ref|YP_003830419.1| two component system histidine kinase [Butyrivibrio proteoclasticus
           B316]
 gi|302394932|gb|ADL33837.1| two component system histidine kinase [Butyrivibrio proteoclasticus
           B316]
          Length = 1148

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 74/253 (29%), Positives = 133/253 (52%), Gaps = 13/253 (5%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I E K+ K +     +  E+ +  ++ F + +SHEIRTP+ +I+G +E+I  Q      +
Sbjct: 186 IEENKRAKEE----TRKFEELNKSQNRFFSSMSHEIRTPINSILGLNEIILRQED---AS 238

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
               + A  I  +G ++L +VND+LDISKIE+GKM++     S+   +SE ++++ L A 
Sbjct: 239 DEIKKDAGNIQGAGRMLLALVNDILDISKIEAGKMDIIPVNYSVSSLISEVVNMMWLRAE 298

Query: 681 EKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE--- 736
           +K + +       +P  +  D   +KQI +N+L+NA+ +T  G  + +       +E   
Sbjct: 299 QKGLTLNVEIDPTLPQELFGDEVRIKQILVNLLNNAVKYTNEG-TVTLHIEKEDIKEEKV 357

Query: 737 -VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            +I  V DTG+G+    +      F +I   +  + EGTGLGL + K +V+   G+  + 
Sbjct: 358 RIIFSVSDTGMGIKEDSIPYLFDAFQRIDEEKNTKIEGTGLGLSIVKQLVELMDGEISVN 417

Query: 796 STPAKGTLIEIIF 808
           S  A+G+   +  
Sbjct: 418 SVYAQGSNFTVSL 430


>gi|226357669|ref|YP_002787408.1| histidine kinase, classic [Deinococcus deserti VCD115]
 gi|226319911|gb|ACO47904.1| putative histidine kinase, classic [Deinococcus deserti VCD115]
          Length = 648

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 85/600 (14%), Positives = 197/600 (32%), Gaps = 52/600 (8%)

Query: 244 TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES---F 300
             +    D      +   L         +      +      +     +           
Sbjct: 57  EAHIHPDDQARIVAEGEALMGRGQPYQLEYRMTRADGQTMWLRDLITPVFRGGVMVKLGG 116

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS--HGNLFYANPSFLLLTKYKSVD 358
             L      +  A            ++  P+   +       +   N +FL +       
Sbjct: 117 VMLDITAEKNAQAELLAARARFSRIIESSPVGMVLSDIKTSRVLETNDAFLRIINCPRAI 176

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
            +            P +S ++  + V   + DRT       LH  +   E    +    +
Sbjct: 177 FMGEEDDF-----NPWVSADDRAELVRRLKEDRTVRDFE-TLHKRRLTGEQRNVLISAEY 230

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN---REGIIL 475
            + +          +  +  D + ++  +E       ++ E + D I +I+    E  IL
Sbjct: 231 LEMDGQETL---LVMAQDITDRKASEMALEESRRTFEALFEHSPDAIKLIDFDTEEMPIL 287

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE--KITLGST 533
             N+  +++ GY  E+I+ K     L  +  + +           L   LE    ++   
Sbjct: 288 QCNKVAARMSGYTREEIIGKSAYATLPDDQRAAILASGDAEFRASLESELEMRFESVQQR 347

Query: 534 KEEKLLSLRIIIKKL--PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH--KSDFL 589
           K+  L  + I +  L             D++  K+ + +L  +++               
Sbjct: 348 KDGSLYPVDINLALLTVGDKRVVLSIERDMTARKKAEAELKSSQERLLLSEKLASLGRLT 407

Query: 590 ARVSHEIRTPLTAIIGF---SEVIKNQRFGPLG-----NPRYIEYANYID-------RSG 634
           A ++HEI TPL A + +   +E +  +    +G     +  + E A  +        ++ 
Sbjct: 408 AGLAHEINTPLAAAMNYLHEAERLAREYQASIGEASVTDDDHREIAGELISTLGEGAKTA 467

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
             + + +  + + ++ ++    L              ++++   A    + +       +
Sbjct: 468 TRIGEFIRRMREHTR-DTVTGVLD---FDAGRGAEATLTMLTHQARAANVELIFEAPEQL 523

Query: 695 PRILADLRSVKQIALNILSNAIHF----TPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
             +  +     Q+  N++ NAIH     +   G + +          +L+V+DTG G++ 
Sbjct: 524 VVLRGEPGRFTQVVTNLVVNAIHACEGTSQQAGTVTVRL-FEQLGHPVLQVQDTGTGISP 582

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN-MGKFYIFSTPAKGTLIEIIFP 809
             L K   P     +     G+GTGLGL +   +V  +  G+  + ++  +G+   + FP
Sbjct: 583 EVLPKIFDPMFTTKD----VGKGTGLGLSIIHDIVTGHFGGEISVQTSIGEGSTFSVSFP 638



 Score = 86.6 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/545 (7%), Positives = 136/545 (24%), Gaps = 56/545 (10%)

Query: 86  TWNIDAHGYL-KEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD---LLKRQN 141
            W  D    +   +S+ +   +G    +       + + I   D    + +   L+ R  
Sbjct: 22  VWEADPVTRVNTFVSDRITSLLGYTPEQWRSPGFWE-AHIHPDDQARIVAEGEALMGRGQ 80

Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
            +  +  +   +G  +++   +   P++   R     +  G++     + + +A      
Sbjct: 81  PYQLEYRMTRADGQTMWLRDLI--TPVF---RGGVMVKLGGVMLDITAEKNAQAELLAAR 135

Query: 202 KKFSHLHEIKK-GHSSVEKEKYDIFSQQSPP------PHLRMKNKVSSLTEYYAHKDDVL 254
            +FS + E    G    + +   +             P      +      + +  D   
Sbjct: 136 ARFSRIIESSPVGMVLSDIKTSRVLETNDAFLRIINCPRAIFMGEEDDFNPWVSADDRAE 195

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
              +     +        +   T           +  +              +  +    
Sbjct: 196 LVRRLKEDRTVRDFETLHKRRLTGEQRNVLISAEYLEMDGQETLLVMAQDITDRKASEMA 255

Query: 315 FDEGENLTPETVDKCPIPFFVYSHGN----LFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
            +E         +  P    +         +   N     ++ Y   + I         L
Sbjct: 256 LEESRRTFEALFEHSPDAIKLIDFDTEEMPILQCNKVAARMSGYTREEIIGK--SAYATL 313

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
              + +   A        S  + +         + +         +         +    
Sbjct: 314 PDDQRAAILASGDAEFRASLESELEMRFESVQQRKDGSLYPVDINLALLT---VGDKRVV 370

Query: 431 NGIEPEDVDTRINKRKMEIEVMQL-----CSILEATSDGIAIINREGIILSTN-RAVSKL 484
             IE +    +  + +++    +L      + L   + G+A           N    + +
Sbjct: 371 LSIERDMTARKKAEAELKSSQERLLLSEKLASLGRLTAGLA--------HEINTPLAAAM 422

Query: 485 FGYPVEDILRKPFTVFL------EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
                 + L + +   +      + +   +    ++ +       T     +   +E   
Sbjct: 423 NYLHEAERLAREYQASIGEASVTDDDHREIAGELISTLGEGAKTATRIGEFIRRMREHTR 482

Query: 539 LSLRIIIKKLPFSSCYSLTMHDISEWKQEK---------NKLSHAKKIAEKESSHKSDFL 589
            ++   +           T+  ++   +            +L   +    + +   ++ +
Sbjct: 483 DTVTG-VLDFDAGRGAEATLTMLTHQARAANVELIFEAPEQLVVLRGEPGRFTQVVTNLV 541

Query: 590 ARVSH 594
               H
Sbjct: 542 VNAIH 546


>gi|209885662|ref|YP_002289519.1| periplasmic sensor signal transduction histidine kinase
           [Oligotropha carboxidovorans OM5]
 gi|209873858|gb|ACI93654.1| periplasmic sensor signal transduction histidine kinase
           [Oligotropha carboxidovorans OM5]
          Length = 523

 Score =  274 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 105/249 (42%), Positives = 160/249 (64%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I E +Q K     A+  AE  +  KS FLA++SHE+RTPL AI+GFSEV+K++ FGP   
Sbjct: 234 IGELEQAKAISDEARHRAEAANVSKSRFLAQMSHELRTPLNAILGFSEVMKSEIFGPHAV 293

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
           P Y +Y+  I  SG  +L+++N++LD+S+IE+G+  L+ EP SL  AV++   L++L A+
Sbjct: 294 PVYKDYSADIHNSGVHLLNLINEILDLSRIEAGRYELNEEPFSLVHAVADCHHLLKLRAS 353

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
            + I I  +F  ++P++  D R+ +QI LN+LSNAI FTP GG+I +    T++    L 
Sbjct: 354 NRGITIHEAFEEDMPKLWGDERATRQIVLNLLSNAIKFTPQGGEIWLKAGWTASGGQYLI 413

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V+DTG G+ + E+   +  FGQ  NS +   +G GLGLP+AK+++D + G F + S    
Sbjct: 414 VKDTGSGIPDDEIPIVLASFGQGSNSIKSAEQGAGLGLPIAKSLIDMHGGTFTLKSKLRI 473

Query: 801 GTLIEIIFP 809
           GT + I FP
Sbjct: 474 GTEVIITFP 482


>gi|291616507|ref|YP_003519249.1| PhoR [Pantoea ananatis LMG 20103]
 gi|291151537|gb|ADD76121.1| PhoR [Pantoea ananatis LMG 20103]
          Length = 437

 Score =  274 bits (702), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 70/404 (17%), Positives = 145/404 (35%), Gaps = 39/404 (9%)

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
            + L +       + Q        G+    +  R  +R++   + +  S  E+  D + +
Sbjct: 54  SHWLWLDRTMTPPSGQASWEPLFYGLYQMQLRNRRRRRELGNLIKRFRSGAESLPDAVIL 113

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
              EG I   N    +  G    +   +     L     S              ++  +K
Sbjct: 114 TTEEGTIFWCNGLAQQHLGLRWPEDNGQNILNLLRYPEFSRYL----------RQRDFDK 163

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
                   +  +  R++         + +   D+++  Q +                + +
Sbjct: 164 PLTLVLNNQHHMEFRVMPY---SEGQWLMVARDVTQMHQLEG--------------ARRN 206

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           F A VSHE+RTPLT + G+ E++ +         +     + +      +  +V  LL +
Sbjct: 207 FFANVSHELRTPLTVLQGYLEMMNDSVMNQRSRDKA---LHTMSEQTRRMDSLVKQLLTL 263

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN---EKRILIRTSFANNIPRILADLRSV 704
           S+IE+       E V +   +     L+Q  A      R  I      ++ ++  +   +
Sbjct: 264 SRIEAAPAINLKEKVDVPVML----KLLQHEAETLSGGRHAIHFHTDPHL-KVFGNDEQL 318

Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764
           +    N++ NA++ TP G +I IS   +    V   V D G G+    + +  + F ++ 
Sbjct: 319 RSAISNLVYNAVNHTPEGTRIDISWLRSKQGAV-FTVCDNGPGIPPEHIPRLTERFYRVD 377

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            ++     G+GLGL + K  +  +  +  I S P + T      
Sbjct: 378 KARSRATGGSGLGLAIVKHALSHHNARLEITSIPHQETCFTFTL 421


>gi|258404324|ref|YP_003197066.1| histidine kinase [Desulfohalobium retbaense DSM 5692]
 gi|257796551|gb|ACV67488.1| histidine kinase [Desulfohalobium retbaense DSM 5692]
          Length = 810

 Score =  274 bits (702), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 84/258 (32%), Positives = 147/258 (56%), Gaps = 12/258 (4%)

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
           + D +        LS AK+ AE+ +  KSDFL+ +SHEIRTP+ A++G S++++      
Sbjct: 413 VRDRT------AALSKAKEEAERANRAKSDFLSGLSHEIRTPMNALLGASDLLEKTEL-- 464

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
             + R  +Y      SG  +L ++ +LLD++++E G++ L  E  SL++ V EAI +V+L
Sbjct: 465 --DARQRKYLRMGKSSGKTLLSLITNLLDVARLERGRLQLAREVFSLEQMVQEAIDVVEL 522

Query: 678 YANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
            A EK +++    A  +    L D   ++QI +N+L+NA+ FTP G ++++  T      
Sbjct: 523 AAQEKGLILNKKIALAVRGTYLGDPVRLRQILVNLLNNAMKFTPQG-RVLVEVTPAEQTG 581

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           V+ RV DTG G+    LE   +PF Q+ +S  +   G+GLGL +++ +++A  G+ ++ S
Sbjct: 582 VLFRVSDTGEGIPQESLETIFEPFSQLDSSSGLPNSGSGLGLAISRQLLEAMGGRIWVES 641

Query: 797 TPAKGTLIEIIFPLYDTS 814
              +G+    + PL  T 
Sbjct: 642 RLGRGSDFFFLVPLERTD 659


>gi|332764275|gb|EGJ94511.1| phosphate regulon sensor kinase PhoR [Shigella flexneri K-671]
          Length = 321

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 63/345 (18%), Positives = 127/345 (36%), Gaps = 33/345 (9%)

Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
           + +   EG I   N    ++ G    +   +     L     +               + 
Sbjct: 1   MVLTTEEGGIFWCNGLAQQILGLRWPEDNGQNILNLLRYPEFTQYL----------KTRD 50

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
             +         + L +R++           +   D+++  Q +                
Sbjct: 51  FSRPLNLVLNTGRHLEIRVMPYTHKQ---LLMVARDVTQMHQLEG--------------A 93

Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
           + +F A VSHE+RTPLT + G+ E++  Q        +     + +      +  +V  L
Sbjct: 94  RRNFFANVSHELRTPLTVLQGYLEMMDEQPLEGAVREKA---LHTMREQTQRMEGLVKQL 150

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704
           L +SKIE+    L  E V +   +       Q  + +K+        N + ++  +   +
Sbjct: 151 LTLSKIEAAPTQLLNEKVDVPMMLRVVEREAQTLSQKKQ-TFTFEIDNGL-KVSGNEDQL 208

Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764
           +    N++ NA++ TP G  I +      +      V D G G+    + +  + F ++ 
Sbjct: 209 RSAISNLVYNAVNHTPEGTHITVRWQRVPHG-AEFSVEDNGPGIAPEHIPRLTERFYRVD 267

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            ++  +  G+GLGL + K  V+ +  +  I ST  KGT    + P
Sbjct: 268 KARSRQTGGSGLGLAIVKHAVNHHESRLNIESTVGKGTRFSFVIP 312


>gi|196231613|ref|ZP_03130471.1| PAS/PAC sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
 gi|196224466|gb|EDY18978.1| PAS/PAC sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
          Length = 605

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 82/503 (16%), Positives = 179/503 (35%), Gaps = 74/503 (14%)

Query: 333 FFVYSHGNLFY--ANPSFLLLTKYKSVDDI-EIAGGLSTLLDAPKL----SDNNAIKPVM 385
            +V     L +   N + +    Y   + +      ++T ++          + A     
Sbjct: 1   MWVVDAETLVFIAVNDTAVRKYGYSREEFLTMTMDQIATPMEDAGETVADDSHGASTAWR 60

Query: 386 LYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKR 445
               +   +   +  H I +   +++ +                           R  +R
Sbjct: 61  HKTKEGAMLLVESTWHEIPFAGRDAVLVL-----------------------TLDRTEQR 97

Query: 446 KMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR-KPFTVFLEQN 504
           + E    +  ++L   SD I + N + ++L  N+   +L+G+  ++++  K    F++  
Sbjct: 98  RAEQRNREQANLLNLASDAIIVRNLDNVVLFWNQGAERLYGWNTQEMIGAKTIETFVKDR 157

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHD 560
                   L   +               +K  + + +      +           +   D
Sbjct: 158 EYEAEIELLKTGVWTGQ-------LTHQSKAGQAVIVNSRWTLVREDDGSPKAVLVINTD 210

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           ++E K+ +++   A+++    +       + ++H++   L+ I+    +++ +      +
Sbjct: 211 VTETKKLESQFLRAQRLEGIGT-----LASGIAHDLNNILSPILMSCGILRKE----FDD 261

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
              ++  + I+ S      IV  +L  ++   G+  L    + L   VSE   ++     
Sbjct: 262 EDTLKMLSIIEGSAERGAGIVKQVLTFARGVEGERVL----LQLKHLVSELAKVMAQTFP 317

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT---------- 730
              I I+T+F  ++  ++ D   + Q+ LN+  NA    P GG I +S            
Sbjct: 318 R-NIDIQTNFPPDLWTVMGDATQLHQVLLNLCVNARDAMPQGGGIRLSAENVNIDQHFAS 376

Query: 731 ----HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
                     V+LR  DTG GM+   +EK   PF          G+GTGLGL     +V 
Sbjct: 377 MNPGAQLGPYVVLRASDTGSGMSPQTMEKIFDPFFTTK----EVGKGTGLGLATVIGIVK 432

Query: 787 ANMGKFYIFSTPAKGTLIEIIFP 809
           ++ G   + S    GT   +  P
Sbjct: 433 SHGGFLTVQSELGVGTTFSVFLP 455



 Score = 44.2 bits (103), Expect = 0.092,   Method: Composition-based stats.
 Identities = 27/242 (11%), Positives = 64/242 (26%), Gaps = 17/242 (7%)

Query: 86  TWNIDAH-GYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144
            W +DA       +++   +  G    + + M +  ++  +         D       W 
Sbjct: 1   MWVVDAETLVFIAVNDTAVRKYGYSREEFLTMTMDQIATPMEDAGETVADDSHGASTAWR 60

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            KT     EG  L V      +P       F+G     ++ ++R   + R   +R  ++ 
Sbjct: 61  HKT----KEGAMLLVESTWHEIP-------FAGRDAVLVLTLDR--TEQRRAEQRNREQA 107

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRM-KNKVSSLTEYYAHKDDVLKTEKYPLLT 263
           + L+           +   +F  Q           ++           D     +  LL 
Sbjct: 108 NLLNLASDAIIVRNLDNVVLFWNQGAERLYGWNTQEMIGAKTIETFVKDREYEAEIELLK 167

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
           +       Q    +           +  ++ +       L      + +   +       
Sbjct: 168 TGV--WTGQLTHQSKAGQAVIVNSRWTLVREDDGSPKAVLVINTDVTETKKLESQFLRAQ 225

Query: 324 ET 325
             
Sbjct: 226 RL 227


>gi|168704913|ref|ZP_02737190.1| two-component system sensory histidine kinase [Gemmata
           obscuriglobus UQM 2246]
          Length = 545

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 80/295 (27%), Positives = 144/295 (48%), Gaps = 7/295 (2%)

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKK 576
               +   +    +   +  ++  L   + +L  ++  +       E   E N+L  AK+
Sbjct: 251 AKDRVVGVVYGSRMQRARGREIGPLEAQVVQLLATAVGAGLQR--LEKDDETNRLRVAKE 308

Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
            AE+    KS FLA VSHE+RTPLT IIG+SE++  Q       P+Y      +  +G  
Sbjct: 309 AAEEADRTKSGFLATVSHELRTPLTTIIGYSEMLLEQA-AVDNLPQYTADLQQVHSAGQH 367

Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696
           +L ++ND+LD SKIE+GK+ +  +P +    + + +  V+  A +    I      ++ R
Sbjct: 368 LLALINDILDFSKIEAGKLEIANDPYAPASLIHDLMVSVEPLAKKNNNRIELDCPPDLGR 427

Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN---EEVILRVRDTGVGMTNYEL 753
            + D   ++Q  LN++ NA  FT  G  + ++         + V + V DTG+GMT  ++
Sbjct: 428 AMGDPTRIRQCVLNLVGNACKFTRDG-LVKVTARRAPVSGVDSVQVAVSDTGIGMTPEQV 486

Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            +  + F Q+ ++   +  GTGLGL +++ +  A  G+  + S P KG+   +  
Sbjct: 487 GRLFQAFTQVDSTAGRKFGGTGLGLAISQRLCAAMGGQITVRSEPGKGSTFTMTI 541


>gi|71908400|ref|YP_285987.1| Hpt sensor hybrid histidine kinase [Dechloromonas aromatica RCB]
 gi|71848021|gb|AAZ47517.1| Hpt sensor hybrid histidine kinase [Dechloromonas aromatica RCB]
          Length = 909

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 81/297 (27%), Positives = 141/297 (47%), Gaps = 12/297 (4%)

Query: 519 LDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578
            +         +G   +     L  I  +    + Y   + D+ + + ++ +L+  K  A
Sbjct: 208 TERASKYSNDEIGQLADAFNTMLIEIADRDHELTEYRDHLEDVVQLRTQELRLA--KDNA 265

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
           E+ +  KS FLA +SHEIRTP+  IIG ++++         N         +  S + +L
Sbjct: 266 EQANRAKSAFLANMSHEIRTPMNGIIGVADLLAAGSL----NAHQQNQLTTLRSSADTLL 321

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-I 697
            ++ND+LD S+IE+G + L   P S+ E + + IS+    A ++ + +      ++P  I
Sbjct: 322 YLLNDILDFSRIEAGGLQLEKLPFSIRETIEQVISVFSPTARKRHLDLWFDIEPSLPDYI 381

Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN----EEVILRVRDTGVGMTNYEL 753
           + D   + Q+  N+L+NA+ FT SG  + IS     +      +++ + DTG+G+    L
Sbjct: 382 VGDRYRLGQVITNLLNNALKFTESGS-VRISCRSQQDKNGQNRLLIEITDTGIGIIAQAL 440

Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
                PF Q  NS   R  G+GLGL +   +V    G+    STP +G+   I  PL
Sbjct: 441 ADIFSPFRQADNSMSRRFGGSGLGLAIVHDLVALMEGEITAKSTPGRGSTFSIDLPL 497


>gi|186683181|ref|YP_001866377.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186465633|gb|ACC81434.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 629

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 75/495 (15%), Positives = 185/495 (37%), Gaps = 45/495 (9%)

Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399
               A+     +  Y++  +          L   +L  +N ++ +    ++         
Sbjct: 27  EFQVADCELEWVNNYEAARNAIARHQHDVYLVDYRLGPHNGLELLREAIANGCSSPIILL 86

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459
                W     + +  +    A+   ++     +    +   I +++ E ++ +  ++L+
Sbjct: 87  TGQGDWE----IDIEAMKAGAADYLEKSQLTGPLLERSIRYAIERKQTEHKIREQAALLD 142

Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL 519
             +D I + + +  IL  N+A   L+G+  E+ + K       +  PS +   L+ ++  
Sbjct: 143 VATDAIFVRDLDDKILFWNKAAESLYGWKKEEAINKKIRSLWHEKHPSKVREALSVLMKN 202

Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPF----SSCYSLTMHDISEWKQEKNKLSHAK 575
               + E      TK  K + +      +      +  + +   DI++ KQ + +   A+
Sbjct: 203 G---SWEGELQQKTKSGKEIVVESRWTLVHEFGNQAQSFLVVNTDITQKKQLEAQFLRAQ 259

Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
           ++            + ++H++   L  I+  +++++ Q    + + R       +  +  
Sbjct: 260 RL-----ESIGTLASGIAHDLNNILAPILMTAQLLEAQ----VHDERSRRLLPILITNTK 310

Query: 636 LVLDIVNDLLDISK-IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
              ++V  +L  ++ +E  +  L  +       +   I  +      K I + T    N+
Sbjct: 311 RGANLVKQVLSFTRGLEGDRTILQLKH------LIIEIQQIIRETFPKSIEVSTQIPQNL 364

Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIIS--------------TTHTSNEEVILR 740
             +  D   + Q+ +N+  NA    P+GG + IS                      +++ 
Sbjct: 365 CTVSGDATQLHQVLMNLCVNARDAMPNGGTLKISAENLFIDENYAKMHIEAKVGHHIVIT 424

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V DTG+G+ +  L++   PF           +GTGLGL     ++ ++ G   + S   K
Sbjct: 425 VTDTGIGIKSEILDRIFDPFFTTKEL----AKGTGLGLSTVLGIIKSHGGFINVCSERGK 480

Query: 801 GTLIEIIFPLYDTSH 815
           G+  ++  P  + + 
Sbjct: 481 GSQFKVYLPAQEAAE 495



 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/198 (10%), Positives = 51/198 (25%), Gaps = 19/198 (9%)

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
           LLT +     + E       +   K Q  G L   S                   +    
Sbjct: 85  LLTGQGDWEIDIEAMKAGAADYLEKSQLTGPLLERSIRY---------AIERKQTEHKIR 135

Query: 321 LTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
                +D      FV      + + N +   L  +K  + I     + +L    +   + 
Sbjct: 136 EQAALLDVATDAIFVRDLDDKILFWNKAAESLYGWKKEEAINKK--IRSLW--HEKHPSK 191

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
             + + +   + +       L     + +    +            +      +  +   
Sbjct: 192 VREALSVLMKNGS---WEGELQQKTKSGKEI-VVESRWTLVHEFGNQAQSFLVVNTDITQ 247

Query: 440 TRINKRKMEIEVMQLCSI 457
            +  + +  +   +L SI
Sbjct: 248 KKQLEAQF-LRAQRLESI 264



 Score = 41.9 bits (97), Expect = 0.47,   Method: Composition-based stats.
 Identities = 16/161 (9%), Positives = 35/161 (21%), Gaps = 6/161 (3%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D    +   ++      G    + I  ++  +    H         +L +  +W G+   
Sbjct: 152 DLDDKILFWNKAAESLYGWKKEEAINKKIRSLWHEKHPSKVREALSVLMKNGSWEGELQQ 211

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIV-HVNRVDNDPRALGKRLDKKFSHLH 208
               G  + V      +  +         + F +V           A   R  +  S   
Sbjct: 212 KTKSGKEIVVESRWTLVHEFGNQ-----AQSFLVVNTDITQKKQLEAQFLRAQRLESIGT 266

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH 249
                   +      I              +   L      
Sbjct: 267 LASGIAHDLNNILAPILMTAQLLEAQVHDERSRRLLPILIT 307


>gi|329848033|ref|ZP_08263061.1| response regulator [Asticcacaulis biprosthecum C19]
 gi|328843096|gb|EGF92665.1| response regulator [Asticcacaulis biprosthecum C19]
          Length = 1140

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 101/606 (16%), Positives = 212/606 (34%), Gaps = 39/606 (6%)

Query: 233 HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL 292
             R      +L +        +      L         + E+   + +     K    ++
Sbjct: 97  LAREVEDQPALHDRMDILRGRVDVRLAELAQVISEYQKQGEEAAVLTIKTNRGKASMDSI 156

Query: 293 QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF-------FVYSHGNLFYAN 345
           +    +            ++             +    I         ++ S        
Sbjct: 157 RTLIADMQAEARREREERIAERRQAFATSVVSVITSAIIGVILSIAITWMISGAATQRRR 216

Query: 346 PSFLLLTKYKSVDDIEIAGGLSTLLDAP--KLSDNNAIKPVMLYRSDRTCIAASARLHTI 403
             +L   +      +     L  L       L+          Y +D +     A     
Sbjct: 217 SQWLQAGQSSLSAALLGEQRLDQLARNALVNLAKYTDAHAAAFYAADGSTFKRIATYGVP 276

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL----- 458
             +   +   +F   +             +  +  D+ +       +      ++     
Sbjct: 277 VDDDVPA---SFSRGQSLLGQAVVDGHIMVVNDIADSHLTAGAALGQWRPRHLVILPAKS 333

Query: 459 EATSDGIAII-------NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
           +   + +  +       +    +L      S++    V     +       + T      
Sbjct: 334 DGMIEAVVELGFLHAYPDATKELL---ERASEVLSVAVRSANYRASLQNFLEETQRQSEE 390

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLL------SLRIIIKKLPFSSCYSLTMHDISEWK 565
             ++   L +     +    + KE  +        L     +L   +       D  +  
Sbjct: 391 LQSQSEELRVNNEELEEQSRALKESHVRLEQQQAELEQTNTQLAEQAAMLEAQRD--DLS 448

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           Q K+++    +  E+ S +KSDFLA +SHE+RTPL + +  ++++ +   G L     +E
Sbjct: 449 QAKDEVDRKARELEQSSRYKSDFLANMSHELRTPLNSSLILAKLLSDNSEGNLT-EEQVE 507

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           +A  I  SGN +L ++ND+LD+SKIE+G+M +H E VSL    S+   +    AN+KR+ 
Sbjct: 508 FAQTIQSSGNDLLALINDILDLSKIEAGQMEIHTESVSLKRLASDMERVFTPIANQKRLK 567

Query: 686 IRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744
           +       +P  +  D + ++Q+  N+LSNA  FT  G  + ++      + ++  V+DT
Sbjct: 568 MTARLGEGVPETVTTDRQRLEQVLKNLLSNACKFTEHG-HVELAI-LKDGDRIVFAVKDT 625

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G++     +  + F Q   +   +  GTGLGL +++ +     G   + S   +G+  
Sbjct: 626 GIGISAEHQHQVFEAFRQADGTISRKYGGTGLGLSISRELSRLLGGNLSVISQVDRGSTF 685

Query: 805 EIIFPL 810
            +  PL
Sbjct: 686 SLSIPL 691


>gi|299149291|ref|ZP_07042351.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
 gi|298512725|gb|EFI36614.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
          Length = 534

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 81/381 (21%), Positives = 163/381 (42%), Gaps = 21/381 (5%)

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAI--INREGIILSTNRAVSKLFGYPVEDIL 493
           E       +R++      L SI+      I +   +    +L  N +++  +G       
Sbjct: 162 EIAVREYKEREVRASKT-LSSIMNNMGVDIYVNSFDSHD-MLYANESMAAPYGGIEHFEG 219

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK-EEKLLSL-RIIIKKLPFS 551
           +K +    +  T          ++  + + T           ++    +       +   
Sbjct: 220 KKCWQALYKDKTGECEFCPKKHLIDENGQPTKVYSWDYQRPFDKCWFRVFSAAFAWIDGQ 279

Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
             + +T  DI   K  + +L  AK+ AE     KS FLA +SHEIRTPL AI+GF+ ++ 
Sbjct: 280 MAHVITSVDIDHQKTIEEELRIAKEKAENLDRLKSAFLANMSHEIRTPLNAIVGFASLLV 339

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
                        +Y + +  +  L+L +++D+LD+SKIE+G ++   + + +     + 
Sbjct: 340 ESD----DKKERQDYVDIMQENTELLLQLISDILDLSKIEAGTLDFTMDYLDIKSFCEDI 395

Query: 672 ISLVQLYANEKRILIRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
           I    +   +K + +    A  +P   I  D + + Q+  N ++NA+ FT  G QI++  
Sbjct: 396 IRNYDIK-EDKPVPVL--LAPTLPNFYIYTDKKRLMQVITNFINNALKFTNKG-QILLEY 451

Query: 730 THTSNE-EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
               +  E+   V DTG+G+   ++++    F ++ +      +GTGLGL + +++++  
Sbjct: 452 HLKEDTCEIEFSVADTGMGIEPDKVDRVFDRFVKLNSF----SKGTGLGLSICRSIIEHL 507

Query: 789 MGKFYIFSTPAKGTLIEIIFP 809
            G   + S    G+      P
Sbjct: 508 GGTIGVESEMGTGSRFWFTHP 528


>gi|168043247|ref|XP_001774097.1| cytokinin receptor AtCKI2-like protein [Physcomitrella patens
           subsp. patens]
 gi|162674643|gb|EDQ61149.1| cytokinin receptor AtCKI2-like protein [Physcomitrella patens
           subsp. patens]
          Length = 975

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 93/620 (15%), Positives = 201/620 (32%), Gaps = 59/620 (9%)

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
           V ++   +      +  ++    T++  +            N +   ++F  L + S  +
Sbjct: 15  VQAMPGLWPESTQAVMLDRRRRHTTDLQAAGTTGRHVVSKENTFIDSEHFKELLDRSCSA 74

Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLL-LTKYKSVD 358
               +           D   NL  + ++             +     S+   +       
Sbjct: 75  DSQQASLARL-YEDRQDNAVNLLKQQLETLNSARLEAERRQIQIMEESYYEPMYNVGDGS 133

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
            +                 + +  P     S      +       +        +     
Sbjct: 134 TLSEDSPRYEHFLGDDGPGSWSSIPGSDSCSVEMEGDSFGPAEYWRDRARGYAKLLTDSI 193

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEV--MQLCSILEATSDGIAIINREGIILS 476
            +  Q  E + +    P      I + + ++      L   L      I   + +     
Sbjct: 194 RREEQLVEKLNEYASMPPPSWQPIEEIRTQLHRFDNFLRFSLRKAPVVIGHQDSDLRYRF 253

Query: 477 TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEE 536
              A   L     E+++ K        +  + +  +  E++     +  E         E
Sbjct: 254 IYNAFPTL---SEEEVIGKTDIEIYSGSGVAELMDFKREVMRKGWPEKREISFNTDLFGE 310

Query: 537 KLLSLRIIIK--KLPFSSCYSLTMHDISEW-----------------KQEKNKLSHAKKI 577
           K   + +     +   +   +    DISE                  K  + +L     I
Sbjct: 311 KTFLIAVEPVLSRSGEAMGLNYIAMDISEQVDKRERISRLREEVAVQKAMEAELHKTIHI 370

Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
            E+    K   LA +SHEIR+PL+ ++  +EV+   +     +    +  + +  SG+LV
Sbjct: 371 TEEAMRAK-QMLATMSHEIRSPLSGVVSIAEVLATTQL----DQEQRQLVDVMVSSGDLV 425

Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-R 696
           L ++ND+LD+SK++SG M    +     E V   + +       K +++     +++P  
Sbjct: 426 LQLINDILDLSKVQSGAMKFEAKKFRPREVVKHVLQMALANMQSKDLILEGLIYDDVPLE 485

Query: 697 ILADLRSVKQIALNILSNAIHFTPSG---------------------------GQIIIST 729
           ++ D+  ++Q+  N++ NAI FT  G                           G++ +  
Sbjct: 486 VIGDVLRIRQVLTNLVGNAIKFTHEGSVTISVRVVPPPPPSVERAAKNSIAECGELAVGE 545

Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
                  ++  V D+G+G+    L    + + Q+  +   +  GTGLGL + K +V+   
Sbjct: 546 GVEDAVWLLCEVSDSGIGIPESALPTLFEKYTQVSTAHARKYGGTGLGLAICKNLVELMG 605

Query: 790 GKFYIFSTPAKGTLIEIIFP 809
           G   + S    G+      P
Sbjct: 606 GNLTVLSKENHGSTFSFALP 625


>gi|90022133|ref|YP_527960.1| ribosomal-protein-alanine acetyltransferase [Saccharophagus
           degradans 2-40]
 gi|89951733|gb|ABD81748.1| ATP-binding region, ATPase-like protein [Saccharophagus degradans
           2-40]
          Length = 1109

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 76/249 (30%), Positives = 116/249 (46%), Gaps = 10/249 (4%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I   K  + +L  AK  AE  S  KS+FLA +SHEIRTP+  ++G   ++ N    P   
Sbjct: 395 IQSRKYYELELLAAKNEAESSSRAKSEFLACMSHEIRTPMNGVLGMLGLVLNSSLTP--- 451

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
                       SG  +L ++ND+LD SK+E+GK+ L          +S+ +      A 
Sbjct: 452 -EQERKLLLAQSSGQSLLSVINDILDYSKVEAGKLELEHLDFDPHRLLSDVVQSFNYSAQ 510

Query: 681 EKRILIRTS-FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN----E 735
           EK I +           +  D   ++QI  N+LSNA+ FT  G +II+     S      
Sbjct: 511 EKGIELVLDDIGLGGKVLRGDPSRLRQIINNLLSNALKFTSQG-EIIVRAKLDSEINGLN 569

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
           ++   V DTG+G+ + ++      F Q+ +S   R  GTGLGL + K +     G  ++ 
Sbjct: 570 QLRCSVTDTGIGIPSDKISGLFDSFTQVDSSTTRRYGGTGLGLSICKMLTRIMGGDIFVV 629

Query: 796 STPAKGTLI 804
           S   KGT  
Sbjct: 630 SEVGKGTRF 638


>gi|308271994|emb|CBX28602.1| hypothetical protein N47_G39260 [uncultured Desulfobacterium sp.]
          Length = 503

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 89/508 (17%), Positives = 176/508 (34%), Gaps = 24/508 (4%)

Query: 315 FDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEI--AGGLSTLLD 371
             +  +  P   D    P  +   +G +   N   L          I          L D
Sbjct: 5   LPQELDWRPRVFDSLSFPTLIMDCNGTVVSVNQKLLEKYHILKSRVIGKSCREIFRNLFD 64

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
            P L  +    P+    ++    +    L  I+    +      +     +     +   
Sbjct: 65  DPDLPCHQETCPLNKTIAEGVGHSV---LRQIERQNGSKYWEDRVFSPILDDDGNVIYVI 121

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
               +   T+  +  +    + +  ++++++  I   +R G IL  N A  +LFGY  + 
Sbjct: 122 ESIRDVTRTKALENILHDIRVFMNRLVQSSASAILSADRSGRILLMNEAAEELFGYNFDH 181

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
                      Q     +   L +       +         T   + + + +    +   
Sbjct: 182 TANISVVDLYPQGVAREIMKKLRDDDYGGRGKLPATHVNILTARGETVPVEMTGAIIYEG 241

Query: 552 S----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
                      +DI E    ++    ++    ++ +      A V+HEI  PLT I+ + 
Sbjct: 242 DNTETATMGIYNDIRERLALQDA--QSQLDQSEKMASLGRLAAGVAHEINNPLTGILMY- 298

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
             +  ++  P           YI        +IV +LL  S+ +SG      E  S++  
Sbjct: 299 GNLMKEKMEPDHP--LQTNITYILEDAERCREIVKNLLAYSR-QSGTSQ---ERFSMNVM 352

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727
           V E++ L++  +    +  +   ++    + AD   + Q+ +N++ NAI      G + +
Sbjct: 353 VEESLRLIRDQSLFMNLTTKKELSDECMMVKADRNKMCQVVINLVMNAIDAMDPNGTLTL 412

Query: 728 ST-THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
            T      +   L + DTG G+ + +  +   PF    +     G+GTGLGL  A  ++ 
Sbjct: 413 KTYRSNDQKRACLEITDTGFGIPDEDRLRIFDPFFTTKDP----GKGTGLGLSTAYGIIK 468

Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
            N G   I  T  +GT   +  PL   S
Sbjct: 469 DNKGDIIIKETGPEGTTFLVELPLDTDS 496



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/279 (7%), Positives = 61/279 (21%), Gaps = 26/279 (9%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN-------HIGDLLKRQN 141
           +D +G +  ++++L +       ++IG    ++   L  DP+         +   +    
Sbjct: 26  MDCNGTVVSVNQKLLEKYHILKSRVIGKSCREIFRNLFDDPDLPCHQETCPLNKTIAEGV 85

Query: 142 TWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD 201
                  +    G+  +     +  PI   +           +           +   + 
Sbjct: 86  GHSVLRQIERQNGSKYWEDRVFS--PILDDDGNVIYV--IESIRDVTRTKALENILHDIR 141

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL------RMKNKVSSLTEYYAHKDDVLK 255
              + L +              I         L         N             +++K
Sbjct: 142 VFMNRLVQSSASAILSADRSGRILLMNEAAEELFGYNFDHTANISVVDLYPQGVAREIMK 201

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
             +               +  T        +     +          +   N        
Sbjct: 202 KLRDDDYGGRGKLPATHVNILTARGETVPVEMTGAIIYEGDNTETATMGIYNDIRERLAL 261

Query: 316 DEGENLTP-----ETVDKCPIPFFVY----SHGNLFYAN 345
            + ++         ++ +              G L Y N
Sbjct: 262 QDAQSQLDQSEKMASLGRLAAGVAHEINNPLTGILMYGN 300


>gi|297568937|ref|YP_003690281.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296924852|gb|ADH85662.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 576

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 75/383 (19%), Positives = 154/383 (40%), Gaps = 46/383 (12%)

Query: 442 INKRKMEIEV---MQLCS----ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
             +  +        +L S    I +  + GI  ++ +G I S NRA   + G+P E+I  
Sbjct: 222 RTEAALSRTASHYDRLSSLYKQIFDDITTGIITVDSQGRITSCNRAAEGISGWPAEEIRG 281

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL-----P 549
           +     + +         +        R   E       K  + + +     +L      
Sbjct: 282 RRVEEIMPE---------IQAGREPGTRGRAESELT--RKSGEKIPVGYSWSRLYGTKRE 330

Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
            +    L++ D+S  +  + ++  ++K+A        +  A V+HE R PL AI G +++
Sbjct: 331 ENGGAILSLQDLSLIRDMEARVRQSEKMA-----AVGEMAAGVAHEFRNPLAAISGSTQL 385

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           +  +     G  +       I R  + +   + + L   +          + V+L E   
Sbjct: 386 LAQRLQKQPGQEK---LLAIITRECDRLEAAIKNFLLFCRP----ATPRKQWVNLYELWE 438

Query: 670 EAISLVQLYAN-EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIS 728
           E I L++   +  +R  +      ++  + AD   ++Q+ LN++SNA    P GG++  +
Sbjct: 439 ECIGLIRQTPDCTERHRLVGKMPPDL-EVWADREQLRQVLLNLVSNACQAMPEGGELSCT 497

Query: 729 TT---HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
                  +   V +R++D G G++  + E+   P+         R EGTGLGL +   ++
Sbjct: 498 AENFQSENESGVRIRLQDQGKGISPEDRERIFNPYFTT------RQEGTGLGLAIVHQII 551

Query: 786 DANMGKFYIFSTPAKGTLIEIIF 808
             + G+  + S+  +GT   +  
Sbjct: 552 AGHGGRIRVASSLGQGTTFTVEL 574



 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 70/233 (30%), Gaps = 13/233 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D+ G +   +       G  A ++ G R+ ++           I    +       ++ 
Sbjct: 255 VDSQGRITSCNRAAEGISGWPAEEIRGRRVEEIMP--------EIQAGREPGTRGRAESE 306

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
           L    G    +P+  +   +Y   RE +G      +    +  D  A  ++ + K + + 
Sbjct: 307 LTRKSGE--KIPVGYSWSRLYGTKREENG-GAILSLQDLSLIRDMEARVRQSE-KMAAVG 362

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
           E+  G +   +      S  +     R+  K     +  A         +  +       
Sbjct: 363 EMAAGVAHEFRNPLAAISGSTQLLAQRL-QKQPGQEKLLAIITRECDRLEAAIKNFLLFC 421

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
            P       +NL +  ++      Q         L  +  P L  + D  +  
Sbjct: 422 RPATPRKQWVNLYELWEECIGLIRQTPDCTERHRLVGKMPPDLEVWADREQLR 474



 Score = 38.1 bits (87), Expect = 5.6,   Method: Composition-based stats.
 Identities = 34/334 (10%), Positives = 84/334 (25%), Gaps = 33/334 (9%)

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
           LL+    +    E    +             L         Y +       ++++D   +
Sbjct: 181 LLSIGPRAEVSLERLLNLFAINGLSFFLVAALAGTLAGRL-YRTEAALSRTASHYDRLSS 239

Query: 321 LTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
           L  +  D        V S G +   N +   ++ + + +                     
Sbjct: 240 LYKQIFDDITTGIITVDSQGRITSCNRAAEGISGWPAEEI-------------RGRRVEE 286

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
            +  +   R   T   A + L   + + E              +  EN        +   
Sbjct: 287 IMPEIQAGREPGTRGRAESELT--RKSGEKIPVGYSWSRLYGTKREENGGAILSLQDLSL 344

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
            R  + ++     ++ ++ E  + G+A           N   + + G     +L +    
Sbjct: 345 IRDMEARVRQS-EKMAAVGE-MAAGVAH-------EFRNPLAA-ISG--STQLLAQRLQK 392

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH 559
              Q     +   +T             +        +   + +  +             
Sbjct: 393 ---QPGQEKLLAIITRECDRLEAAIKNFLLFCRPATPRKQWVNL-YELWEECIGLIRQTP 448

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
           D +E  +   K+    ++       +   L  VS
Sbjct: 449 DCTERHRLVGKMPPDLEVWADREQLRQVLLNLVS 482


>gi|229526782|ref|ZP_04416186.1| sensor protein TorS [Vibrio cholerae bv. albensis VL426]
 gi|229336940|gb|EEO01958.1| sensor protein TorS [Vibrio cholerae bv. albensis VL426]
          Length = 984

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 71/238 (29%), Positives = 117/238 (49%), Gaps = 8/238 (3%)

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
           ++ AE+ S  KS FLA +SHEIRTP+  ++G + ++++             Y   I+RSG
Sbjct: 460 RQQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLQDTTLTAT----QQHYVQVINRSG 515

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
             +L I+ND+LD SKIE+G + +H     L   V E   L+Q  A EK I +      ++
Sbjct: 516 RSLLAILNDVLDYSKIEAGHLEIHHTHFDLYRLVRETHELMQSRAREKGITLTYHIDEDV 575

Query: 695 PRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-VILRVRDTGVGMTNYE 752
            +    D   + Q+  N++ N I FT  G ++ I      + + +   V D+G+G+   E
Sbjct: 576 TQYWQGDEIRIGQVLNNLVGNGIKFTEQG-EVRIRIRLAPDGQGIRFAVEDSGIGIAEEE 634

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
                  F Q    +  +  GTGLGL +++ +V A  G+  + S   +G+      PL
Sbjct: 635 QATLFDAFTQADAGR-RKLGGTGLGLAISRKLVQAMGGELQLASQLGQGSCFGFTLPL 691


>gi|124386279|ref|YP_001026566.1| histidine protein kinase PhoR [Burkholderia mallei NCTC 10229]
 gi|254178591|ref|ZP_04885246.1| histidine protein kinase PhoR [Burkholderia mallei ATCC 10399]
 gi|254180194|ref|ZP_04886793.1| phosphate regulon sensor protein PhoR [Burkholderia pseudomallei
           1655]
 gi|254199459|ref|ZP_04905825.1| phosphate regulon sensor kinase PhoR [Burkholderia mallei FMH]
 gi|254205773|ref|ZP_04912125.1| phosphate regulon sensor kinase PhoR [Burkholderia mallei JHU]
 gi|254358827|ref|ZP_04975100.1| phosphate regulon sensor kinase PhoR [Burkholderia mallei
           2002721280]
 gi|124294299|gb|ABN03568.1| histidine protein kinase PhoR [Burkholderia mallei NCTC 10229]
 gi|147749055|gb|EDK56129.1| phosphate regulon sensor kinase PhoR [Burkholderia mallei FMH]
 gi|147753216|gb|EDK60281.1| phosphate regulon sensor kinase PhoR [Burkholderia mallei JHU]
 gi|148027954|gb|EDK85975.1| phosphate regulon sensor kinase PhoR [Burkholderia mallei
           2002721280]
 gi|160699630|gb|EDP89600.1| histidine protein kinase PhoR [Burkholderia mallei ATCC 10399]
 gi|184210734|gb|EDU07777.1| phosphate regulon sensor protein PhoR [Burkholderia pseudomallei
           1655]
          Length = 448

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 76/411 (18%), Positives = 151/411 (36%), Gaps = 35/411 (8%)

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT-----RINKRKMEIEVMQLCSILEATS 462
                   +      + P      G     +           R++E +  +    ++A+ 
Sbjct: 61  HTQRLWRLLDAPVYGEVPSAPGIWGEIYYRLHKLAKQWHAQVRQVEQQHSRFIQAIQASP 120

Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522
           +G+A+++    I   N      FG   +  LR+  T  +         +           
Sbjct: 121 NGVAMLDDRDQIEWCNAIAEVHFGLDAKRDLRQHVTHLVRHPDFVRYLN----------G 170

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES 582
           Q  ++  +         ++  +       +   L   DI+E ++                
Sbjct: 171 QHYDETLVMRGMGGNRQNVLAVQVFPYGENRKLLLTQDITELERT--------------D 216

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
           + + DF+A VSHE++TPLT + GF E ++     PL +     Y   +++  + +  IV 
Sbjct: 217 AMRRDFVANVSHELKTPLTVLSGFLETMRE---LPLSDDERARYLELMEQQASRMRHIVT 273

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702
           DLL ++K+E          V +   +       Q  +      I       +  +     
Sbjct: 274 DLLVLAKLEGESKPPADRAVDMRTVLDHLRDDAQTLSGGHH-EITFKVDETL-AVTGAQT 331

Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
            +     N+++NAI +TP GG I +        + +  V D+G+G+   EL +  + F +
Sbjct: 332 EIFSALGNLVTNAIRYTPEGGTIRVEWR-RDGAQAVFSVTDSGLGIPAAELPRLTERFYR 390

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
           +  S+     GTGLGL + K ++  +  +  I S   +G+     FP + T
Sbjct: 391 VDRSRSRDTGGTGLGLAIVKHVLQRHDAQLSIQSEEGRGSTFTARFPAHRT 441


>gi|17549841|ref|NP_523181.1| capsular synthesis two-component sensor kinase and response
           regulator transcription regulator protein [Ralstonia
           solanacearum GMI1000]
 gi|17432097|emb|CAD18773.1| probable capsular synthesis regulatory (two-component sensor kinase
           and response regulator hybrid) transcription regulator
           protein [Ralstonia solanacearum GMI1000]
          Length = 1098

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 122/672 (18%), Positives = 212/672 (31%), Gaps = 44/672 (6%)

Query: 167 PIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFS 226
           P      + +  RG   V    +   P  L   LD+               +     +  
Sbjct: 89  PTRRYAGKLAADRG-ATVTGADLTATPVTLISSLDRPADGARLAMALRVLRDVSGAPLMD 147

Query: 227 QQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKK 286
            Q     L         T   A         +       +  + E        + Q    
Sbjct: 148 AQKLGVTLDGFLYTPDATFLAAFPALRPADLRSAREQGPQPFIRE----RIAAVEQRIAS 203

Query: 287 QYFGTLQNNSK---ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY 343
                ++        + E   H +   L                  P   F         
Sbjct: 204 SAPEAVRGRRPLWYPADETNGHASVSQLIVPMYRDNARVLTIALTLPDAQFTRFFLRKES 263

Query: 344 ANPSFLLL--TKYKSV----DDIEIAGGLSTLLDAPKLSDNNAIKP----------VMLY 387
             P F LL  T  +S+     D+E    L T+L     S     +P          V   
Sbjct: 264 RRPGFFLLSQTGQRSLGDLPADLEERRLLDTVLANADWSRQAGAEPTTFYKDGVFFVSRR 323

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM 447
            +    IA  A      W+         + F               +       ++  K 
Sbjct: 324 IAGPDWIAVYAYRWQDVWSDLQHEFFAGMVFCVLVLGLLWATAAYFDLRVTRPLLSDAKK 383

Query: 448 EIEVMQL-CSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT 505
            IE      +I++    GI + + E   IL  N    ++ G    +   + +   + +  
Sbjct: 384 LIEAEHFSKAIIDTLPIGIGVYSPETDSILLENSVAVRMLGNVSNEQRLRFYRYVMHERD 443

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWK 565
              +               +E     +  +   + +     +    S   L + D++E K
Sbjct: 444 AEPVP--------GARHSFIEVRWERAEGQSSYIGVASSWTRFGGRSAVLLGLVDMNERK 495

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
             +  L  AK+ A++ +  KS FLA V HEIRTPL   +G  E++              E
Sbjct: 496 ANEILLMEAKQTADEANRAKSMFLAIVGHEIRTPLHGAMGHLELLARSALSL----EQRE 551

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           + +   RS + +L +VNDLLD +K+E+  + +   P+  +E +            +  + 
Sbjct: 552 WVDMTSRSFDALLTLVNDLLDSTKLEANALQISPVPMCPNEVLERCARSFGAAIVQGGVA 611

Query: 686 IRTSFANNIPRILADL-RSVKQIALNILSNAIHFTPSGGQIIISTTH--TSNEEV--ILR 740
                  ++  ++    + + QI  N+LSNA  FT  G  I I++      + +V     
Sbjct: 612 FHCITDPDLDLVVDGDDQRLTQILQNLLSNAAKFTERG-TITIASRCLKREDGKVWARFE 670

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V DTG+G+          P  Q  +S   R  GTGLGL L + +     G+  + S P  
Sbjct: 671 VADTGIGIPAAMQSTIFNPLAQADDSISRRFGGTGLGLFLCRNLAHLMGGRISVRSEPGI 730

Query: 801 GTLIEIIFPLYD 812
           G+   +  P   
Sbjct: 731 GSAFRVDLPFAQ 742


>gi|312795608|ref|YP_004028530.1| phosphate regulon sensor protein phoR [Burkholderia rhizoxinica HKI
           454]
 gi|312167383|emb|CBW74386.1| Phosphate regulon sensor protein phoR (EC 2.7.3.-) [Burkholderia
           rhizoxinica HKI 454]
          Length = 446

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 80/413 (19%), Positives = 168/413 (40%), Gaps = 35/413 (8%)

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK-----RKMEIEVMQLCSILEATS 462
                   +      + P      G     +     +     R++E +  +    ++A+ 
Sbjct: 58  HTQRLWRLLDAPVYGEVPSAPGLWGEIYYRLHRLAKRWHAQVRQVEQQHTRFIQGIQASP 117

Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522
           +G+ +++    I   N    + FG  V+  L +  T  + Q        ++  + S    
Sbjct: 118 NGVMMLDDHNRIEWCNAIGEQHFGLDVKRDLCQHVTHLVRQP------DFVRYLNSQQYD 171

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES 582
           + L    +G++++  +LS+++        +   +   DI+E +                 
Sbjct: 172 EALTMRGMGASRQ-HILSVQVFPY---GDNRKLILTQDITELECT--------------D 213

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
           + + DF+A VSHE++TPLT + GF E ++      L       Y + + +    +  IVN
Sbjct: 214 AMRRDFVANVSHELKTPLTVLSGFLETMRELPIAELD---RRRYLDIMAQQAARMQTIVN 270

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702
           DLL ++ +E        +P+ +   +    +     +  +   I+    +++  ++    
Sbjct: 271 DLLVLANLEGDIKPPAEQPIDMRAVLQHLRNEASGLSGGRH-HIKFEADDDL-NVVGTES 328

Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
            +     N++SNAI +TP GG I ++     +  V L V DTG+G+    + +  + F +
Sbjct: 329 EILSALGNLVSNAIRYTPDGGAIQVTWRAERDGAV-LSVADTGLGIPAEHIPRLTERFYR 387

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
           +  S+     GTGLGL + K ++  +    +I S   KG+   + FP    +H
Sbjct: 388 VERSRSRDTGGTGLGLAIVKHVLQRHDADLHIASEEGKGSTFSVRFPPSRVTH 440


>gi|257086990|ref|ZP_05581351.1| hypothetical protein EFLG_00581 [Enterococcus faecalis D6]
 gi|256995020|gb|EEU82322.1| hypothetical protein EFLG_00581 [Enterococcus faecalis D6]
 gi|315027860|gb|EFT39792.1| PAS domain S-box [Enterococcus faecalis TX2137]
          Length = 591

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 71/363 (19%), Positives = 155/363 (42%), Gaps = 30/363 (8%)

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
            Q   +L+    G+ II+ +G +   N  + ++ G        K       +        
Sbjct: 250 EQFHELLDELMIGVFIIDTQGRLRLLNPKMQEMLGLSA-----KNMQSNYLEVIQDADLI 304

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY--SLTMHDISEWKQEKN 569
           +L   +  +     ++IT+        L L +       ++ Y      +D++  +Q + 
Sbjct: 305 HLIHQVVAEKNSLHQEITVTQGPTPLRLDLSLRYLDDQSANDYQVLGIAYDLTRVRQLE- 363

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
                          + DF++ VSHE++TP+T+++GF+E + +            ++ + 
Sbjct: 364 -------------KMQKDFVSNVSHELKTPVTSLLGFTETLIDG--AKEDPEVLNQFLHI 408

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           + +    +  ++ ++L++S+  S  +    + ++L++ ++E +   Q     K++    +
Sbjct: 409 MQKDAQRLQQLIQEILELSR-GSATIPYAEQEITLEKFITEILGSYQQQLAAKQLK---T 464

Query: 690 FANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747
             + +P             I  N++ NAI ++   GQI IS     N+++ L V+DTG+G
Sbjct: 465 VVHGLPESQFFTKYELFYPIVKNLIENAIQYSQENGQITISYAIE-NQQLRLSVQDTGIG 523

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           ++  + E+  + F ++  ++     GTGLGL + +   +   GK  I S    GT   I 
Sbjct: 524 ISQKDQERIFERFYRVDKARSRHSGGTGLGLAIVQNYTELLGGKIAIDSHLGLGTTFTIT 583

Query: 808 FPL 810
            PL
Sbjct: 584 LPL 586


>gi|238760198|ref|ZP_04621344.1| Sensor kinase protein rcsC [Yersinia aldovae ATCC 35236]
 gi|238701577|gb|EEP94148.1| Sensor kinase protein rcsC [Yersinia aldovae ATCC 35236]
          Length = 955

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 91/370 (24%), Positives = 157/370 (42%), Gaps = 29/370 (7%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
             ++E        I+ +   GI+I+   +G  + +N                  +   L 
Sbjct: 351 ALRLEEHEQFNRKIVASAPVGISILRISDGTNILSNELA-------------HNYINLLT 397

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
                 +   + E  +  +           T     L +  +  +          + D+S
Sbjct: 398 NEDRERITRIICEQQANFVDVM--------TSNNNNLQISFVHSRYRNEDVAICVLVDVS 449

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
              + +  L      AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R
Sbjct: 450 SRVKMEESLQEMAAAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPHGVDR 508

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                  ++ S  L+L I++D+LD SKIES ++ +     S  E ++   +       +K
Sbjct: 509 ---LVTAMNNSSGLLLKIISDILDFSKIESEQLKIEPSEFSTVEVITHITANYLPLVVKK 565

Query: 683 RILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
           R+ +       +PR+   D   ++Q+  N+L+NAI FT +G  II+         +  RV
Sbjct: 566 RLGLYCFIEPAVPRLMYGDPVRLQQVISNLLNNAIKFTDTG-CIILQLRVR-GHYLEFRV 623

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
           RDTGVG+ + E+ +   PF Q+    Q   +GTGLGL + + +++   G   + S    G
Sbjct: 624 RDTGVGINSREINQLFDPFFQVGTGVQRHFQGTGLGLAICEKLINLMDGDVEVISELGMG 683

Query: 802 TLIEIIFPLY 811
           ++  I  PL+
Sbjct: 684 SIFAIRIPLF 693


>gi|52144035|ref|YP_082793.1| sensor histidine kinase [Bacillus cereus E33L]
 gi|51977504|gb|AAU19054.1| sensor histidine kinase [Bacillus cereus E33L]
          Length = 466

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 65/224 (29%), Positives = 119/224 (53%), Gaps = 5/224 (2%)

Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
           + +FLA VSHE+RTPL+ I G+SE I +   G    P+  +    I +  + +  +V+DL
Sbjct: 239 RKEFLANVSHELRTPLSYIKGYSEAILD---GVAKGPQQEKVTQLIHKEADRMQRLVHDL 295

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704
           LD++++E     L  +P+   + + + +   ++   EK+I I T+    I  ++ D   +
Sbjct: 296 LDLAQLEGEHFPLQKQPIVFSQLIEDVLDTYEIKFIEKKIRISTNLNPEII-VMIDEDRM 354

Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764
           +Q+  N+L NAI +T   G I+I+     +    L ++DTG+G+    LE   + F ++ 
Sbjct: 355 QQVLHNVLDNAIRYTHQNGDIMITLRQIDD-YCELSIKDTGIGIDKEHLENLGERFYRVD 413

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            ++  +  GTGLGL + + +V  + G++ I S    GT + I  
Sbjct: 414 KARSRQHGGTGLGLAIVRQIVHIHDGQWKIESEKGNGTTVSIKL 457


>gi|265765195|ref|ZP_06093470.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
 gi|263254579|gb|EEZ26013.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
          Length = 411

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 90/377 (23%), Positives = 158/377 (41%), Gaps = 33/377 (8%)

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ------------ 503
           +IL + +    +IN + +++ TN     L G   E          L              
Sbjct: 44  TILRSMNACFILINSDLVVIRTN--YYDLSGISEEPASSGRVGDLLNCKNAVRSGGGCGA 101

Query: 504 ---NTPSVMNHYLTEILSLDLR-QTLEKITLGSTKEEK-----LLSLRIIIKKLPFSSCY 554
                  ++ H +            LE      + + +      +S+             
Sbjct: 102 HKNCENCMIRHTIENAFCHKKGFHKLEASMRLLSSDHQQIIPCDVSVSGTYLNNEGHEQM 161

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
            LT++DI+E K  +  L+  K+ A      KS F+A +SHEIRTPL AI+GFS ++    
Sbjct: 162 LLTVYDITELKNMQRLLNIEKENAVSAEKLKSAFIANMSHEIRTPLNAIVGFSGLLA--- 218

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                +     Y + +  + + +L IV D+LD+SKIESG ++ H+    +++ +     +
Sbjct: 219 -SADDDTEKKMYLDIVAENNDRLLQIVTDVLDLSKIESGSLDFHYSEFDVNDLLCALHGI 277

Query: 675 VQLYANEK-RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
           + +   +K  I +      +   I ++   + QI  N++ NA+ FT SG +I        
Sbjct: 278 LNIRLKDKPEIKLICKAGTDEWIIYSEQHRIVQIITNLVHNAMKFTHSG-EICFGCRPQG 336

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
            +E+   V DTG+G+   E +K    F ++         GTGLGL L++ +V    G+  
Sbjct: 337 EDEIYFYVSDTGIGIPAGEQDKIFDRFTKLD----HEVPGTGLGLTLSQTIVQNLGGEMG 392

Query: 794 IFSTPAKGTLIEIIFPL 810
           + S   KG+      PL
Sbjct: 393 VESEVTKGSTFWFTLPL 409


>gi|255975712|ref|ZP_05426298.1| sensor histidine kinase [Enterococcus faecalis T2]
 gi|255968584|gb|EET99206.1| sensor histidine kinase [Enterococcus faecalis T2]
          Length = 506

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 72/364 (19%), Positives = 160/364 (43%), Gaps = 32/364 (8%)

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
            Q   +L+    G+ II+ +G +   N  + ++ G        K       +        
Sbjct: 165 EQFHELLDELMIGVFIIDTQGRLRLLNPKMQEMLGLSA-----KNMQSNYLEVIQDADLI 219

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY--SLTMHDISEWKQEKN 569
           +L   +  +     ++IT+        L L +       ++ Y      +D++  +Q + 
Sbjct: 220 HLIHQVVAEKNSLHQEITVTQGPTPLRLDLSLRYLDDQSANDYQVLGIAYDLTRVRQLE- 278

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE-YAN 628
                          + DF++ VSHE++TP+T+++GF+E + +   G   +P+ ++ + +
Sbjct: 279 -------------KMQKDFVSNVSHELKTPVTSLLGFTETLID---GAKEDPKVLDQFLH 322

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            + +    +  ++ ++L++S+  +  +    + ++L++ ++E +   Q     K++    
Sbjct: 323 IMQKDAQRLQQLIQEILELSRGGA-TIPYAEQEITLEKFITEILGSYQQQLAAKQLK--- 378

Query: 689 SFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
           +  + +P             I  N++ NAI ++   GQI IS     N+++ L V+DTG+
Sbjct: 379 TVVHGLPESQFFTKYELFYPIVKNLIENAIQYSQENGQITISYAIE-NQQLRLSVQDTGI 437

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G++  + E+  + F ++  ++     GTGLGL + +   +   GK  I S    GT   I
Sbjct: 438 GISQKDQERIFERFYRVDKARSRHSGGTGLGLAIVQNYTELLGGKIAIDSHLGLGTTFTI 497

Query: 807 IFPL 810
             PL
Sbjct: 498 TLPL 501


>gi|332980938|ref|YP_004462379.1| integral membrane sensor signal transduction histidine kinase
           [Mahella australiensis 50-1 BON]
 gi|332698616|gb|AEE95557.1| integral membrane sensor signal transduction histidine kinase
           [Mahella australiensis 50-1 BON]
          Length = 471

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 71/251 (28%), Positives = 130/251 (51%), Gaps = 8/251 (3%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E  Q  + +++      K    + D +A VSHE+RTPL+ I G+SE +K+         +
Sbjct: 227 ELGQLASAINYMSSELAKLDQMRRDLIANVSHELRTPLSLIRGYSEALKDGVV--KDTEQ 284

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             +Y + I      +  +V+DLLD+S++ESG ++++  P S+   + E     +  A + 
Sbjct: 285 QKQYVDIILDETARLQKLVSDLLDLSQLESGSLSINPHPFSISRCIHEICRRFEAAAAKN 344

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           +I +  S  +NI  + AD   ++Q+  N++ NAI+ TP+ G+II+S       +  ++V 
Sbjct: 345 QIELTASADDNII-VHADEGRIEQVLYNLIQNAINHTPTHGRIIVSAEKHD-GKAFIQVS 402

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG G++  +L      F +  +++    +GTGLGL +A+ ++ A+     + S P + T
Sbjct: 403 DTGRGISPDDLPHIFDKFYKGEHNR----KGTGLGLTIARGILTAHGSDITVKSQPNQST 458

Query: 803 LIEIIFPLYDT 813
                 PLY  
Sbjct: 459 TFAFYLPLYRE 469


>gi|300868783|ref|ZP_07113392.1| periplasmic sensor signal transduction histidine kinase
           [Oscillatoria sp. PCC 6506]
 gi|300333219|emb|CBN58584.1| periplasmic sensor signal transduction histidine kinase
           [Oscillatoria sp. PCC 6506]
          Length = 680

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 75/273 (27%), Positives = 132/273 (48%), Gaps = 27/273 (9%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           +   +    +L  A K A+  +  K +FL  +SHE+RTPL  IIGF + +++        
Sbjct: 393 VERLRSWAEELEVASKQAQVANQLKDEFLRNISHELRTPLNGIIGFLQFVQDGDCDDRDE 452

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
              +E+      +   +L+I+ND+LDI+KIESG +++  E ++L + + EA+ L  +   
Sbjct: 453 E--MEFVQRAYDAAIHLLNIINDILDIAKIESGTLSMMLETINLTQVIEEAVDLQVVEVE 510

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-------- 732
           +K + +          + AD   +KQ+ LN+LSNAI FT SG +I IS            
Sbjct: 511 QKGLELILPDLKEPIMVYADPDKLKQVFLNVLSNAIKFTDSG-KITISIRLESVLLNNGA 569

Query: 733 ---------------SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
                          + + V++ + DTG+G+   + +K  +PF     S   +  G GLG
Sbjct: 570 SYNGNAVYNMAQVTGTKDWVVVTIEDTGIGIDQEQQDKLFQPFVMADGSTTRKYGGNGLG 629

Query: 778 LPLAKAMVDANMGKFYIFST-PAKGTLIEIIFP 809
           L +++ ++    G   ++S    +GT + I  P
Sbjct: 630 LAISRNLMQLMAGTISLYSAGINQGTTLTIALP 662


>gi|169830859|ref|YP_001716841.1| multi-sensor signal transduction histidine kinase [Candidatus
           Desulforudis audaxviator MP104C]
 gi|169637703|gb|ACA59209.1| multi-sensor signal transduction histidine kinase [Candidatus
           Desulforudis audaxviator MP104C]
          Length = 855

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 89/526 (16%), Positives = 191/526 (36%), Gaps = 43/526 (8%)

Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDD 359
           F  ++ R+ P+     D       E   +         +G +     + +   + +S   
Sbjct: 358 FSPVAERHLPAHVPEDDSEARTRAEVEHEVEEGRAPEDNGEVRTPGRALMSHLEERSDVL 417

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
           +             +     A +   L       +    RL  + +       ++  P+ 
Sbjct: 418 LFTDL---RGFVPQEKGRLLAKQMAALRAEAAVPVVVDGRLEGVFFLGSK---LSGEPYS 471

Query: 420 KANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
           + +               +      +++ +    L ++LE   +G+  ++  GII + N 
Sbjct: 472 RED-VKLLSTLVSQVTVSLKNAQLYQEVLVMKRYLENVLENMGNGLIAVDPSGIITTFNS 530

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
           A  +L G     +L K     L+     +M   +    +      +E     +    + +
Sbjct: 531 AAERLTGLAAGKVLGKKAREVLDPAISGLMLQTMETAEAKGE---VELEIHANEV-IRYV 586

Query: 540 SLRIII--KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
           S    +            L M D+++ K+ + + S  +++A           A ++HEI+
Sbjct: 587 SCNTAVLETPESGRRGAILVMSDVTQIKELEREKSQIQRLA-----SLGQVAAGMAHEIK 641

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
            PL +I  F+E++  +   P      I ++  + +    + ++V +LL  ++       L
Sbjct: 642 NPLVSIKTFAELLPEKYENP---EFRINFSRIVSQEIERINNLVTELLGFARPS----RL 694

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
           H E V+    + E + L+    + + I +   +   +  + AD   +KQ   N+  N I 
Sbjct: 695 HCEEVNAGALMDEVLLLLSPQLDSQNIRVHRQYDPKVRPLWADKNQLKQAFFNVCLNGIQ 754

Query: 718 FTPSGGQIIISTTHT------------SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
              +GG++ +S                +  +V + V DTGVG++  E ++   PF     
Sbjct: 755 AMSAGGELRVSILAESGGNQSDKGSAPTGGKVKIVVEDTGVGISAKEKDRVFDPFFTTKP 814

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
                 EG G+GL ++  +V  + G   I S   +G   EI  P+ 
Sbjct: 815 ------EGVGIGLSISHKIVVDHGGTIQIRSRQGEGATFEICLPVA 854


>gi|116623716|ref|YP_825872.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116226878|gb|ABJ85587.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 822

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 76/404 (18%), Positives = 145/404 (35%), Gaps = 21/404 (5%)

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDT-RINKRKMEIEVMQLCSILEATSDGIAIIN 469
           L +  + F       +                   ++++    +    +E   + I +++
Sbjct: 158 LILAVLAFFGRRLTLDARRNLAELRASAARLAEANQELKFSEARYRRFIELAVEAIFVVD 217

Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
            +G I+  NR  + L G   E +L             S     L  +        + ++ 
Sbjct: 218 SKGAIIEVNREATALTGIARERLLGSSMMSLFAAGESSEDAFPLDVLAQG---VPIMRLC 274

Query: 530 LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS--D 587
                +  ++        LP          D+ E KQ ++     ++   +    +S   
Sbjct: 275 RIHRPDGAVVEAEAHSAMLP-EGMILCFCRDLKERKQAEDDRKKLEEQLVQAQKMESIGR 333

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
               V+H+    LT I G+S ++ +    P   P   +    I R+G     +   LL  
Sbjct: 334 LAGGVAHDFNNLLTVINGYSRMLLD---APPSEPPERDSLEEIHRAGERAAGLTQQLLAF 390

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707
           S+    K  L    +     V E  S++ +    + I ++ +  +    + AD   ++Q+
Sbjct: 391 SR----KQILQPRVLDCSRVVREIQSML-VRLVGEDIDLKVTLCDAPATVCADRHQLEQV 445

Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNE--EVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
            +N+  NA    P GG + I T+        V L V D+G GM   +  +  +PF     
Sbjct: 446 IMNLAVNARDAMPRGGTMHIETSMMEGSVSHVTLAVSDSGAGMGEEQQRRIFEPFFTTK- 504

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
                G+GTGLGL + + +V  + G   + S P  G+   I  P
Sbjct: 505 ---EIGKGTGLGLSIIQGIVQQSGGSIEVESEPGCGSTFRIFLP 545



 Score = 48.5 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/207 (9%), Positives = 51/207 (24%), Gaps = 11/207 (5%)

Query: 80  PRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKR 139
              V   + +D+ G + E++ E     G    +++G  +  +        +    D+L +
Sbjct: 207 ELAVEAIFVVDSKGAIIEVNREATALTGIARERLLGSSMMSLFAAGESSEDAFPLDVLAQ 266

Query: 140 QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199
                    +   +G  +      A LP         G          +         K+
Sbjct: 267 GVPIMRLCRIHRPDGAVVEAEAHSAMLP--------EGMI-LCFCRDLKERKQAEDDRKK 317

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
           L+++     +++          +D                +         + D L+    
Sbjct: 318 LEEQLVQAQKMESIGRLAGGVAHDF--NNLLTVINGYSRMLLDAPPSEPPERDSLEEIHR 375

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKK 286
               +   +           L      
Sbjct: 376 AGERAAGLTQQLLAFSRKQILQPRVLD 402


>gi|262165943|ref|ZP_06033680.1| sensor histidine kinase [Vibrio mimicus VM223]
 gi|262025659|gb|EEY44327.1| sensor histidine kinase [Vibrio mimicus VM223]
          Length = 733

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 68/250 (27%), Positives = 118/250 (47%), Gaps = 10/250 (4%)

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           L   K  A+  +  KS FLA +SHEIRTP+  ++G ++++           +  ++   +
Sbjct: 340 LEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILLKDELTV----KQRQHLTSL 395

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
             SG  ++ ++N++LD SKIE GK  L + P  L   +    S+      EK +  +   
Sbjct: 396 YESGEHMMYLLNEILDYSKIEQGKFELDYSPFPLRSIIGSIKSIYSSLCFEKGLQFQLHS 455

Query: 691 AN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT---SNEEVILRVRDTGV 746
              +      D   ++QI  N+LSNA+ FT  G  + +  +         + ++V+D+G+
Sbjct: 456 EIIDTRWYYGDKARLRQIIFNLLSNAVKFTEQGF-VSVGLSEENIGDEYFLTIKVQDSGI 514

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+    L++  +PF Q  +    R  GTGLGL + K + +   G   + S   +GT  E+
Sbjct: 515 GIPQDALDRIFQPFEQAESHTTRRFGGTGLGLAIVKQIAELMSGAVSVQSEVGQGTCFEV 574

Query: 807 IFPLYDTSHP 816
              L   S P
Sbjct: 575 RVKLA-ASEP 583


>gi|255320056|ref|ZP_05361252.1| phosphate regulon sensor kinase PhoR [Acinetobacter radioresistens
           SK82]
 gi|262380562|ref|ZP_06073716.1| phosphate regulon sensor kinase PhoR [Acinetobacter radioresistens
           SH164]
 gi|255302924|gb|EET82145.1| phosphate regulon sensor kinase PhoR [Acinetobacter radioresistens
           SK82]
 gi|262298008|gb|EEY85923.1| phosphate regulon sensor kinase PhoR [Acinetobacter radioresistens
           SH164]
          Length = 452

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 80/400 (20%), Positives = 157/400 (39%), Gaps = 32/400 (8%)

Query: 412 AMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI--EVMQLCSILEATSDGIAIIN 469
            ++  P++                     +    + E+   + +  S L A S+ + +I+
Sbjct: 75  WISNRPYDAPPNLNGIWGALLFNVYRAQRQERIVQAEMVGLIDRAQSSLVALSEAVMLID 134

Query: 470 REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT 529
               I   N A  KL G    D   +     L      +   Y   I     +       
Sbjct: 135 DLNQIEWFNPATEKLLGIQPLD-RGRNLLTILR---QPIFIEYFQNI----DQAPDGIKM 186

Query: 530 LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
                E+  + +++          + L  +D++  +  +                + DF+
Sbjct: 187 KSPVHEDHYVQIKLT---RFGGESHLLVAYDVTRMQNLE--------------QMRKDFV 229

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
             +SHE+RTPLT + G+ E   +Q      NPR+    + +      +  +VNDLL +S+
Sbjct: 230 DNISHELRTPLTVLSGYIETFTDQED---LNPRWKRAFDQMQAQTKRMNSLVNDLLLLSR 286

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709
           +E+ K     + V +   +++     Q Y  +    +     ++   I +D   +     
Sbjct: 287 LENNKKIAKNQIVEMPGLMNQLFDDAQAYNVDYGHTLNLDIDSHCDLIGSD-MELASAFS 345

Query: 710 NILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
           N+++NAI +TP GG I I   H   E     V+DTG+G+    L +  + F ++ +++  
Sbjct: 346 NLITNAIKYTPKGGTITIGW-HDDGEHGYFTVQDTGIGIDPRHLPRLTERFYRVDSARSR 404

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +  GTGLGL + K ++  +     I S   +G+  + +FP
Sbjct: 405 QTGGTGLGLAIVKHVLMQHNAYLEIESKENEGSTFKAVFP 444


>gi|123441725|ref|YP_001005709.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Yersinia enterocolitica subsp. enterocolitica
           8081]
 gi|122088686|emb|CAL11488.1| two component sensor kinase/response regulator protein RcsC
           [Yersinia enterocolitica subsp. enterocolitica 8081]
          Length = 955

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 93/370 (25%), Positives = 159/370 (42%), Gaps = 29/370 (7%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
             ++E        I+ +   GI+I+   +G  + +N                  +   L 
Sbjct: 351 ALRLEEHEQFNRKIVASAPVGISILRISDGTNILSNELA-------------HNYINLLT 397

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
                 +   + E  +  +           T     L +  +  +          + D+S
Sbjct: 398 NEDRERITRIICEQQANFVDVM--------TSNNNNLQISFVHSRYRNEDVAICVLVDVS 449

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
              + +  L      AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R
Sbjct: 450 SRVKMEESLQEMAAAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPQGVER 508

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                  ++ S  L+L I++D+LD SKIES ++ +     S  E ++   +       +K
Sbjct: 509 ---LVTAMNNSSGLLLKIISDILDFSKIESEQLKIEPSEFSTVEVITHITANYLPLVVKK 565

Query: 683 RILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
           R+ +      ++PR++  D   ++Q+  N+L+NAI FT +G  II+         +  RV
Sbjct: 566 RLGLYCFIEADVPRLMLGDAVRLQQVISNLLNNAIKFTDTG-CIILQVRVR-GYYLEFRV 623

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
           RDTGVG+ + E+ +   PF Q+    Q   +GTGLGL + + +V+   G   + S    G
Sbjct: 624 RDTGVGINSREINQLFDPFFQVGTGVQRHFQGTGLGLAICEKLVNLMDGDVEVISELGMG 683

Query: 802 TLIEIIFPLY 811
           ++  I  PLY
Sbjct: 684 SIFAIRIPLY 693


>gi|126657454|ref|ZP_01728610.1| two-component sensor histidine kinase [Cyanothece sp. CCY0110]
 gi|126621158|gb|EAZ91871.1| two-component sensor histidine kinase [Cyanothece sp. CCY0110]
          Length = 569

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 78/292 (26%), Positives = 129/292 (44%), Gaps = 19/292 (6%)

Query: 533 TKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
            +        I + +       +   H          +L  A   AE+ S  KSDFLA  
Sbjct: 275 DRSRYWCPAEIELIQELADQVGTAIAH-----ATLYQELEQATLAAEEASRLKSDFLAST 329

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           +HE+RTPL  IIGF ++I +            E+     +S   +L+++ND+LDI+KIE+
Sbjct: 330 THELRTPLNGIIGFLKLILDGMAD--DAQEQQEFLEEAHKSALHLLNLINDILDIAKIEA 387

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR--ILADLRSVKQIALN 710
           GKM+L    V L E      +     A  K +  R+   + +    +  + + + Q+  N
Sbjct: 388 GKMDLELGSVELAELFQAVDNFTLPQAQRKHLAFRSKLPSTLTPIMVYGNYQRLLQVMFN 447

Query: 711 ILSNAIHFTPSGGQI----IIS--TTHTSN---EEVILRVRDTGVGMTNYELEKAMKPFG 761
           ++SNAI FT  G  +    I+     +        V + V DTG+G++  +  K  + F 
Sbjct: 448 LVSNAIKFTHEGSIVVNAEIVKKKIKYQDQEFPGLVKVSVTDTGIGVSLDQQAKLFEKFV 507

Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFPLYD 812
           Q+  S      GTGLGL +++ +V A  G+   +S     G+ +    PL  
Sbjct: 508 QVDGSHTKAYGGTGLGLAISQKLVQAMGGQVEFYSMGEGLGSTVTFTVPLEQ 559


>gi|110637642|ref|YP_677849.1| chemotaxis response regulator [Cytophaga hutchinsonii ATCC 33406]
 gi|110280323|gb|ABG58509.1| chemotaxis response regulator (methyltransferase) [Cytophaga
            hutchinsonii ATCC 33406]
          Length = 1618

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 99/606 (16%), Positives = 200/606 (33%), Gaps = 56/606 (9%)

Query: 243  LTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY 302
            L+  +    D +       + + ++    +  +   + +          + +     +  
Sbjct: 1032 LSNIHPEDRDRINKAVNAYINTSQTHWELEYRYQHADGSYKLINDRGYLMLDEHGTPYRM 1091

Query: 303  LSHRNHPSL----SAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSV 357
            LS     +          E E      +D   +  +           + +  ++  Y   
Sbjct: 1092 LSSMLDITEIRDTKKDLKESEMRLSLALDASNMAAWHIDMDTRHIAYSDTLAVIFGYPKD 1151

Query: 358  DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIP 417
              +      S L+      D +  +                R   I W   +   +  I 
Sbjct: 1152 TTL----VWSDLVAQIYPEDMHLYQTARQQMETTGLYEYEIR---IVWPDNSIKWIKTIG 1204

Query: 418  FEKANQFPENMPQNGIEPEDVDTRINKRKMEI----EVMQLC--------------SILE 459
                +         GI  +    +    ++E        +L               +I +
Sbjct: 1205 KMLLDSDGSQRRMIGITRDITKDKEASLQLEQMVVKRTAELRKKNEDLSQQNEFIETIFD 1264

Query: 460  ATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL 519
            A+ + IA++N++ +I S N+A   +F    E  + + +T    Q+    +  Y   +   
Sbjct: 1265 ASVNSIAVVNKDLVITSVNKACEDIFLIRREAAIGQKYTDVFSQS--EAVFDYENILSVF 1322

Query: 520  DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-CYSLTMHDISEWKQEKNKLSHAKKIA 578
              +     + +    E K L    I            +  HDI+E      KLS      
Sbjct: 1323 SGQSLHNSVLINRGPETKYLDNYFIPLAYNNMVYGALIISHDITEINAANQKLSQINNQL 1382

Query: 579  EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
             K +S    F    SH+++ PL  I  F  ++  +R           Y   I  S   + 
Sbjct: 1383 IKSNSDLEQFAYIASHDLQEPLRKIRVFISLLNQKR----AKDDVDTYLQKIAASAERMS 1438

Query: 639  DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
             ++ ++LD S++      +    + L+  +S  +   +L   EK  ++       +P I 
Sbjct: 1439 SLIKNVLDFSRLSYDHNAM--TDIDLNSTISYLLVDFELIIKEKGAVVHV---GKLPHIN 1493

Query: 699  ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI-------------LRVRDTG 745
                 + Q+  N+LSN++ F      I I     +N++V              +  +D G
Sbjct: 1494 GIAHQISQLFSNLLSNSLKFCVQKPLISIEAIQLTNKQVRTFEQLDPSRKYIVISFKDNG 1553

Query: 746  VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
            +G      +K    F ++    +I  +G G+GL L K +V+ + G   + S   KGT   
Sbjct: 1554 IGFEQKYADKIFGFFYRM-AQTEINYKGNGIGLALCKKIVENHGGLINVESEIDKGTTFR 1612

Query: 806  IIFPLY 811
            II PL+
Sbjct: 1613 IILPLF 1618



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/154 (11%), Positives = 44/154 (28%), Gaps = 7/154 (4%)

Query: 437  DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE--DILR 494
            +       R++     +   +   T+D +   N     +  +    +L GY  +  ++ R
Sbjct: 969  ETRVAERTRELATSEERFRLVSTVTNDVVVDWNFMNNSIWLSDNYERLLGYKKDTFELTR 1028

Query: 495  KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC- 553
            K +   +       +N  +   ++       E        +     +      +      
Sbjct: 1029 KFWLSNIHPEDRDRINKAVNAYINTSQTH-WELEYRYQHADGSYKLINDRGYLMLDEHGT 1087

Query: 554  ---YSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
                  +M DI+E +  K  L  ++         
Sbjct: 1088 PYRMLSSMLDITEIRDTKKDLKESEMRLSLALDA 1121



 Score = 39.6 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 21/177 (11%), Positives = 49/177 (27%), Gaps = 9/177 (5%)

Query: 87   WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP---NNHIGDLLKRQNTW 143
            W+ID        S+ L    G      +     D+   ++ +           ++    +
Sbjct: 1127 WHIDMDTRHIAYSDTLAVIFGYPKDTTL--VWSDLVAQIYPEDMHLYQTARQQMETTGLY 1184

Query: 144  YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
              +  +   + +     I      +   +   S  R  GI      D +     +++  K
Sbjct: 1185 EYEIRIVWPDNSIK--WIKTIGKMLLDSDG--SQRRMIGITRDITKDKEASLQLEQMVVK 1240

Query: 204  FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
             +     K    S + E  +     S      +   +   +   A +D  L   +  
Sbjct: 1241 RTAELRKKNEDLSQQNEFIETIFDASVNSIAVVNKDLVITSVNKACEDIFLIRREAA 1297



 Score = 39.2 bits (90), Expect = 2.5,   Method: Composition-based stats.
 Identities = 46/370 (12%), Positives = 101/370 (27%), Gaps = 50/370 (13%)

Query: 239 KVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE 298
           +     E        LK  K+ L T+ E      E+  + N    +  +   +     + 
Sbjct: 633 EDGPNKELLTKLKRELKESKFNLQTAIEELETTNEELQSSNEELLSSNEELQSSNEELQS 692

Query: 299 SFEYLSH--RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY-ANPSFLLLTKYK 355
             E L      H        +  +          I   +     L    NP+   L    
Sbjct: 693 LNEELHTLNTEHQLRIQELLDLNDDLNNYFRCSDIGQVIVDKDMLIRKFNPAAAGLINII 752

Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
             D       L+T         +                    ++   + N EN + +  
Sbjct: 753 ESDVSRSITHLTTNFRYDNFERDIKQAL------------FENKIIEKELNLENGVTLLV 800

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL----EATSDGIAII--- 468
             +    +            +    +           +L SI+    +++   I  +   
Sbjct: 801 RIYSYIRKNNIIDGALISFIDISGFK-----------KLNSIINGVFDSSKSSILALSAS 849

Query: 469 -NREGII-----LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522
            NR G I     +++N   ++LFG  + +    PF+         +    +  ++     
Sbjct: 850 RNRSGEISELFSITSNSVANELFGKNLSE-EHVPFSAVSMHLYELIYKDLV-RVVETGNS 907

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES 582
              E         +K   +      +      +LT++DIS+ K  +++L  +        
Sbjct: 908 FVTELGL-----NDKWFDVSA----VKMMDGLALTLNDISDRKMMEDQLRKSYGELFAAK 958

Query: 583 SHKSDFLARV 592
            +       +
Sbjct: 959 ENLKTLNYNL 968


>gi|254382127|ref|ZP_04997489.1| sensory histidine kinase [Streptomyces sp. Mg1]
 gi|194341034|gb|EDX22000.1| sensory histidine kinase [Streptomyces sp. Mg1]
          Length = 1838

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 69/283 (24%), Positives = 137/283 (48%), Gaps = 26/283 (9%)

Query: 559  HDI----SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
             DI    +E ++ +  L    +       +KS+FLA +SHE+RTPL +++  ++++ +  
Sbjct: 1321 RDIEVKNTEIEEARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNA 1380

Query: 615  FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
               L  P+ +E+A  I  +G+ +L ++ND+LD+SK+E+GKM++    ++L + V    + 
Sbjct: 1381 DENLS-PKQVEFAETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVDYVEAT 1439

Query: 675  VQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIII------ 727
             +    EK +      +  +P  +  D + + Q+  N+LSNA+ FT +G   ++      
Sbjct: 1440 FRPLTAEKGLDFSVRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDTGAVELVIRPAGT 1499

Query: 728  --------------STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
                          S      + +   V DTG+G+   ++    + F Q   +   +  G
Sbjct: 1500 DVPPAIREQLLEAGSLREADGDLIAFSVTDTGIGIAASKMLVIFEAFKQADGTTSRKYGG 1559

Query: 774  TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
            TGLGL +++ +     G+ +  S P +G+   +  PL+ +  P
Sbjct: 1560 TGLGLSISREIARLLGGEIHAASEPGRGSTFTLYLPLHPSELP 1602


>gi|163852022|ref|YP_001640065.1| PAS sensor protein [Methylobacterium extorquens PA1]
 gi|163663627|gb|ABY30994.1| PAS sensor protein [Methylobacterium extorquens PA1]
          Length = 903

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 97/667 (14%), Positives = 206/667 (30%), Gaps = 86/667 (12%)

Query: 190 DNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH 249
            +        ++     ++  +        + +              +   +      A 
Sbjct: 92  VDAAPEGKLVVEDNGRMIYANEAYMRLAGGDSFSNLRSIERIFVGAPEVSEAVYRLAQAS 151

Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
           +DD    E+  +      +      ++ I +    + +    L       +      +  
Sbjct: 152 RDDRAYAEEIRMSPPPGGAADRDFAWYRIAVRPIPRHRGSAAL-------WTVSDITHER 204

Query: 310 SLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYK-------SVDDIE 361
                  +      + +D  P  F  + + G++ Y N +      Y         +  +E
Sbjct: 205 ERQENVFQELQHAIDYLDHAPAGFLSIDAAGSIVYMNATLASWLGYDLATVGSGGLKLLE 264

Query: 362 IAGGLSTLLDAPKLSDNNAIKP--VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE 419
           IA G   L  +P L          + L R +   +                  +      
Sbjct: 265 IAPGADMLTASPGLPGEVRTDRYDIDLRRRNGQPLPTR---------------LYHRVAY 309

Query: 420 KANQFPENMPQNGIEP-EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
             +  P       +      D    +R  E+ + +    L  +   IA ++R+G ++  N
Sbjct: 310 GQDGAPGPSRTFVLNRSAGSDADEPQRAAEVRLARF---LNNSPIAIATLDRDGRVIRAN 366

Query: 479 RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE-------KITLG 531
            +  +LF         +      +      +      ++   L +               
Sbjct: 367 TSFVRLFAGMPRQPAAEGGRDAPDPMMRDAVLERDRGVIEGALARAANGFGGLDPIEVGL 426

Query: 532 STKEEKLLSLRIII---------------KKLPFSSCYSLTMHDISEWKQEKNKLSHAKK 576
           S   ++   + +                           L   D +  +Q + +++  +K
Sbjct: 427 SGPGDRSARVWMSPADSDGTPSPDAEARAGSDGDHERVILYALDTTAQRQLEQQVAQTQK 486

Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
           +              ++H+    L AIIG+S+++              +    I ++ N 
Sbjct: 487 MDTV-----GQLAGGIAHDFNNVLQAIIGYSDLLLASHR---PTDHAFQDIMQIKQNANR 538

Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696
              +V  LL  S+    +  L  E + + EA+S+   L       +R+ +       I  
Sbjct: 539 AASLVRQLLAFSR----RQTLRPEVMDVGEALSDLTLL-LKRLLGERVQLDFRHGREIWP 593

Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTT-----------HTSNEEVILRVRDTG 745
           I AD+   +Q+ +N+  NA    P GG + I T              + + V++ V DTG
Sbjct: 594 IKADVNQFEQVIVNLAVNARDAMPGGGSLTIRTANCPVDGERPVGIPAGDHVMIEVTDTG 653

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
            G+     +K  +PF          G+GTGLGL     +V+ + G   + ST  +GT   
Sbjct: 654 EGIPPEVRQKIFEPFFTTK----EIGKGTGLGLSTVFGIVNQSGGAIDVQSTVGEGTTFR 709

Query: 806 IIFPLYD 812
           I  P ++
Sbjct: 710 IYLPRHE 716



 Score = 65.4 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 51/464 (10%), Positives = 119/464 (25%), Gaps = 33/464 (7%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDV--SDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           +G +   +E   +  G  +F  +   +  +        +    +    +    +  +  +
Sbjct: 105 NGRMIYANEAYMRLAGGDSFSNL-RSIERIFVGAPEVSEAVYRLAQASRDDRAYAEEIRM 163

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
            P  G           + +    R       + +  +         + + L     +L  
Sbjct: 164 SPPPGGAADRDFAWYRIAVRPIPRHRGSAALWTVSDITHERERQENVFQELQHAIDYLDH 223

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHL--RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
              G  S++     ++   +    L   +    S   +              P L  E  
Sbjct: 224 APAGFLSIDAAGSIVYMNATLASWLGYDLATVGSGGLKLLEIAPGADMLTASPGLPGEVR 283

Query: 268 SLPEQEDFHTINLNQYTKKQYFGTLQNNSKE----SFEYLSHRNHPSLSAYFDEGENLTP 323
           +     D    N      + Y                  L+              E    
Sbjct: 284 TDRYDIDLRRRNGQPLPTRLYHRVAYGQDGAPGPSRTFVLNRSAGSDADEPQRAAEVRLA 343

Query: 324 ETVDKCPIPFF-VYSHGNLFYANPSFLLLT--KYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
             ++  PI    +   G +  AN SF+ L     +             ++    L  +  
Sbjct: 344 RFLNNSPIAIATLDRDGRVIRANTSFVRLFAGMPRQPAAEGGRDAPDPMMRDAVLERDRG 403

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
           +    L R+             +    + S  +   P   ++  P    +     +    
Sbjct: 404 VIEGALARAANGFGGLDPIEVGLSGPGDRSARVWMSPA-DSDGTPSPDAEARAGSDGDHE 462

Query: 441 RI--------NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDI 492
           R+         +R++E +V Q   + +            GI    N  +  + GY    +
Sbjct: 463 RVILYALDTTAQRQLEQQVAQTQKM-DTVGQL-----AGGIAHDFNNVLQAIIGYSDLLL 516

Query: 493 L-RKPFTVFLEQNTP-----SVMNHYLTEILSLDLRQTLEKITL 530
              +P     +         +     + ++L+   RQTL    +
Sbjct: 517 ASHRPTDHAFQDIMQIKQNANRAASLVRQLLAFSRRQTLRPEVM 560



 Score = 45.0 bits (105), Expect = 0.055,   Method: Composition-based stats.
 Identities = 34/330 (10%), Positives = 68/330 (20%), Gaps = 25/330 (7%)

Query: 79  IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK 138
                 F  +IDA G +  ++  L   +G     +    L  +      D       L  
Sbjct: 222 DHAPAGFL-SIDAAGSIVYMNATLASWLGYDLATVGSGGLKLLEIAPGADMLTASPGLPG 280

Query: 139 RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
              T      L    G    +P  L     Y ++      R F +       +D     +
Sbjct: 281 EVRTDRYDIDLRRRNG--QPLPTRLYHRVAYGQDGAPGPSRTFVLNR--SAGSDADEPQR 336

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP-------------------PPHLRMKNK 239
             + + +          +       +    +                     P   M++ 
Sbjct: 337 AAEVRLARFLNNSPIAIATLDRDGRVIRANTSFVRLFAGMPRQPAAEGGRDAPDPMMRDA 396

Query: 240 VSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
           V                  +  L   E  L    D                +    ++  
Sbjct: 397 VLERDRGVIEGALARAANGFGGLDPIEVGLSGPGDRSARVWMSPADSDGTPSPDAEARAG 456

Query: 300 FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDD 359
            +    R          + +        +        + G     N     +  Y  +  
Sbjct: 457 SDGDHERVILYALDTTAQRQLEQQVAQTQKMDTVGQLAGGIAHDFNNVLQAIIGYSDL-L 515

Query: 360 IEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389
           +                  NA +   L R 
Sbjct: 516 LASHRPTDHAFQDIMQIKQNANRAASLVRQ 545


>gi|312879449|ref|ZP_07739249.1| multi-sensor hybrid histidine kinase [Aminomonas paucivorans DSM
           12260]
 gi|310782740|gb|EFQ23138.1| multi-sensor hybrid histidine kinase [Aminomonas paucivorans DSM
           12260]
          Length = 985

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 91/678 (13%), Positives = 201/678 (29%), Gaps = 73/678 (10%)

Query: 182 GIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS 241
           G + +     +     +      +         +       +        P    ++   
Sbjct: 188 GRIRLLGEMRENEERLRLALHATNQGLFDLNCQTGETLVNPEYARMLGYDPGSFRESHEE 247

Query: 242 SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ-NNSKESF 300
            +   +    +         +         +    +++ +          ++ ++     
Sbjct: 248 WVQRLHPEDREAAVGAYEGYVAGLLPEYRAEYRMRSVSGDWRWVLSLGKVMEWDDRGRPL 307

Query: 301 EYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS---HGNLFYANPSFLLLTKYKSV 357
             L      +     +E   L  E     P    ++           + S   + +    
Sbjct: 308 RMLGTHTDITPLKKAEEALRLIAEA--DVPPGEDIFRFLVRHMALSLDMSHAFIARLDPG 365

Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD-------------RTCIAASARLHTI- 403
           +     G            ++    P+     +             R      ARL  + 
Sbjct: 366 E--PGWGHCVAGWGPQGFRESGFSFPLEGLAGEVVSRGSCLVPSGIRGVFPRDARLEELG 423

Query: 404 -------QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
                       +  A+  +          +     +          + + +    +  +
Sbjct: 424 AQSGWGTLLRGGDGKALGLVVLLDRRPLEVDPSARSLFRSFASRLTGEMERQRTEEKYQT 483

Query: 457 ILEATSDGI----AIINREG-----IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
           +     DG      + +  G       ++ N A  K+ G   E+IL +     L     S
Sbjct: 484 LFREMLDGFAVHEILCDETGKPTDYRFVAVNPAFEKMTGLRGEEILGRRVKEVLPGTEES 543

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQE 567
            +  Y    L+    + +   +   + E+      +     P    ++    D++  K+ 
Sbjct: 544 WIETYGRVALTG---EPVHFESYSQSLEKHF---EVTAYC-PQKGQFACLFADVTARKKA 596

Query: 568 KNKLSHAKKIAEKESSH--KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + + +  +    +             V+H++   LT I+G+ E+++ +  G   +    E
Sbjct: 597 EQERNRLEDQVRQAQKMDSIGRLAGGVAHDLNNLLTPILGYGEILQAEFRG---DEEKRE 653

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
               I R+G    D+V  LL   +    K  L F  + L+E V     L++     + I 
Sbjct: 654 CVEEILRAGQRARDLVAQLLAFGR----KQVLEFRTLDLNEVVRGFEKLLRRTI-REDIK 708

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS------------ 733
           +R    + +P I  D   ++Q+ LN+  NA    P GG + + T                
Sbjct: 709 LRFFLQDPLPPIRGDAGQLEQVLLNLAVNAQDAMPQGGVLSVETGAADLDEAYAASHQGM 768

Query: 734 --NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
                V+L V D+G GM         +PF         +G+GTGLGL     +V  + G 
Sbjct: 769 TVGRHVLLVVSDSGKGMDEEMRAHLFEPFYTTK----EKGKGTGLGLATVYGIVRQHGGC 824

Query: 792 FYIFSTPAKGTLIEIIFP 809
            + +    +G   ++ FP
Sbjct: 825 IWAYGESGQGMTFKLFFP 842



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 35/486 (7%), Positives = 108/486 (22%), Gaps = 74/486 (15%)

Query: 96  KEISEELPKTIGNYA-------FKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
             ++ E  + +G           + +     +  +        ++  LL      Y    
Sbjct: 224 TLVNPEYARMLGYDPGSFRESHEEWVQRLHPEDREAAVGAYEGYVAGLL----PEYRAEY 279

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG----------- 197
                  +    + L  +  +         R  G                          
Sbjct: 280 RMRSVSGDWRWVLSLGKVMEWDDRGRP--LRMLGTHTDITPLKKAEEALRLIAEADVPPG 337

Query: 198 ----KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253
               + L +  +   ++     +        +         +   +            +V
Sbjct: 338 EDIFRFLVRHMALSLDMSHAFIARLDPGEPGWGHCVAGWGPQGFRESGFSFPLEGLAGEV 397

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFG---------------TLQNNSKE 298
           +      + +      P       +           G                L+ +   
Sbjct: 398 VSRGSCLVPSGIRGVFPRDARLEELGAQSGWGTLLRGGDGKALGLVVLLDRRPLEVDPSA 457

Query: 299 SFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS----------HGNLFYANPSF 348
              + S  +  +        E        +    F V+                  NP+F
Sbjct: 458 RSLFRSFASRLTGEMERQRTEEKYQTLFREMLDGFAVHEILCDETGKPTDYRFVAVNPAF 517

Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
             +T  +  + +        + +    ++ + I+           +   +   +++ +  
Sbjct: 518 EKMTGLRGEEILGR-----RVKEVLPGTEESWIETYGRVALTGEPVHFESYSQSLEKH-- 570

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI--LEATS--DG 464
                    FE     P+      +  +    +  +++      Q+     +++     G
Sbjct: 571 ---------FEVTAYCPQKGQFACLFADVTARKKAEQERNRLEDQVRQAQKMDSIGRLAG 621

Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
               +   ++        ++          K   V             + ++L+   +Q 
Sbjct: 622 GVAHDLNNLLTPI-LGYGEILQAEFRGDEEKRECVEEILRAGQRARDLVAQLLAFGRKQV 680

Query: 525 LEKITL 530
           LE  TL
Sbjct: 681 LEFRTL 686



 Score = 45.4 bits (106), Expect = 0.040,   Method: Composition-based stats.
 Identities = 24/254 (9%), Positives = 57/254 (22%), Gaps = 32/254 (12%)

Query: 94  YLKEISEELPKTIGNYAFKMIGMRLCDVSD---ILHIDPNNHIGDLLKRQNTWYGKTTLW 150
               ++    K  G    +++G R+ +V        I+    +           G+   +
Sbjct: 509 RFVAVNPAFEKMTGLRGEEILGRRVKEVLPGTEESWIETYGRVA--------LTGEPVHF 560

Query: 151 PI-EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
                +        A  P   +  +F+      +               RL+ +     +
Sbjct: 561 ESYSQSLEKHFEVTAYCP---QKGQFA-----CLFADVTARKKAEQERNRLEDQVRQAQK 612

Query: 210 IKKGHSSVEKEKYDIFSQQSP--------PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
           +           +D+ +  +P            R   +     E         +     L
Sbjct: 613 MDSIGRLAGGVAHDLNNLLTPILGYGEILQAEFRGDEEKRECVEEILRAGQRARDLVAQL 672

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS---HRNHPSLSAYFDEG 318
           L      +  +     +N      ++          +   +L                  
Sbjct: 673 LAFGRKQV-LEFRTLDLNEVVRGFEKLLRRTIREDIKLRFFLQDPLPPIRGDAGQLEQVL 731

Query: 319 ENLTPETVDKCPIP 332
            NL     D  P  
Sbjct: 732 LNLAVNAQDAMPQG 745


>gi|257092730|ref|YP_003166371.1| integral membrane sensor hybrid histidine kinase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257045254|gb|ACV34442.1| integral membrane sensor hybrid histidine kinase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 584

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 76/255 (29%), Positives = 130/255 (50%), Gaps = 6/255 (2%)

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           S+  + + +L+ AK+ AE  S  KS FLA +SHEIRTP+  ++G +E++           
Sbjct: 193 SDSIRLRIELNAAKEAAEAASRAKSQFLANMSHEIRTPMNGVLGIAELLLATPLA----E 248

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
           +       + RSG  +LD++ND+LD SKIE+GK+ L      L   + + +      A  
Sbjct: 249 QQRSRLQTLYRSGQSLLDVINDILDFSKIEAGKLELRESDFDLRAMLRDVLDAFAATAAA 308

Query: 682 KRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
           K + + +    ++P  + AD   ++Q+  N++ NAI FT +G +++++     ++ +   
Sbjct: 309 KGLALSSRLGADVPAGLHADQARLRQVLTNLIGNAIKFTEAG-RVVVTVERLDDQHLRFA 367

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V+DTGVG+   E  +    F Q   S   R  GTGLGL +++ +V    G+  + STP  
Sbjct: 368 VQDTGVGLAAEERARVFDAFAQADVSHTRRHGGTGLGLAISRQIVTLMAGEIGVDSTPGA 427

Query: 801 GTLIEIIFPLYDTSH 815
           G+      P     H
Sbjct: 428 GSTFWFKLPFQPAQH 442


>gi|317063078|ref|ZP_07927563.1| PAS/PAC sensor signal transduction histidine kinase [Fusobacterium
           ulcerans ATCC 49185]
 gi|313688754|gb|EFS25589.1| PAS/PAC sensor signal transduction histidine kinase [Fusobacterium
           ulcerans ATCC 49185]
          Length = 451

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 91/376 (24%), Positives = 166/376 (44%), Gaps = 45/376 (11%)

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
           E  +  +I+E+ SDGI + ++E  IL  N A  KL      ++L K F   +       +
Sbjct: 100 EKSKAEAIVESISDGIIVTDKENKILLINNAAEKLLNVEESELLDKSFLTAIP---NRKI 156

Query: 510 NHYLTEILSLDLRQT----LEKITLGSTKEEKLLSLRI--IIKKLPFSSCYSLTMHDISE 563
              +TE+ + +  ++    LE     + ++     + I  II K   +      + DI++
Sbjct: 157 YDSITEVKNNNDIKSTFKQLEISLNSNVEKNIYCRVFINSIIGKNKENLGIVTLLQDITK 216

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            K+                  KSDF++ VSHE RTPLT++    E++ +   G + N   
Sbjct: 217 LKEI--------------DQMKSDFVSTVSHEFRTPLTSMGMAVELLGDGSVGTI-NETQ 261

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            E    I      +  ++ DLLD+S++ESGK ++ FE  S+ + V  A++ ++ ++  + 
Sbjct: 262 KELLKVIKEDNERLNFLIRDLLDLSRLESGKTHMKFEECSIKKIVETAVNSLKNFSENRN 321

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSN---------AIHF-TPS-GGQIIISTTHT 732
           + I      +   + ADL  +                   AI + +    G II+     
Sbjct: 322 VKIEIRNIKDSFLVFADLNKIL---------LVLTNLLTNAIKYKSEEREGNIIVE-AFK 371

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
             + +++ V+D G G+     EK    F Q+  S   + EGTGLGL + K ++ A+ G+ 
Sbjct: 372 KGKNIVVSVKDNGKGIPEEYKEKIFNKFIQVKISNDGKIEGTGLGLSICKEIIKAHGGEI 431

Query: 793 YIFSTPAKGTLIEIIF 808
           ++ S   KG++     
Sbjct: 432 WVDSVLNKGSIFYFSL 447


>gi|260770406|ref|ZP_05879339.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           furnissii CIP 102972]
 gi|260615744|gb|EEX40930.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           furnissii CIP 102972]
          Length = 1203

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 90/380 (23%), Positives = 156/380 (41%), Gaps = 16/380 (4%)

Query: 442 INKRKMEIEVMQLCS---ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
           I +R       QL     ++    + I I +    +L TN   +   G            
Sbjct: 494 IQERDALHSKEQLALLQHVINGLPNRIFIHDAHYQLLLTNCQGA---GPGACSPCSMRAE 550

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP--FSSCYSL 556
                     +  +   +L        +            ++ R    +           
Sbjct: 551 AANSACLVENVAEF-NTVLQGQTVTRHDVDVTDCPSGMNTVNYRRTQLRGGENDEKFILT 609

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            ++DIS  K+++  L  AK +A+K    +  FLA +SHE+RTP+  ++G  E++K     
Sbjct: 610 VVNDISAQKEQERHLRQAKNVAQKAVLSRERFLASMSHELRTPIAGMVGLLEMLK----I 665

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
              N       N +  S + +  +VND+LD SK+E+ ++ L      L   + E + +  
Sbjct: 666 RETNEDTRLILNNVMSSAHHLHLLVNDILDFSKLEAQQLELDSVKCYLLHEIGELLRVHC 725

Query: 677 LYANEKRILIRTSFANN-IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
             A EK +    ++    +  ++ D   ++QI  N+LSNAI FT SG  + +    T  +
Sbjct: 726 TAAREKSLDFHVNWTPGRVKTVIVDSLRLRQIINNLLSNAIKFTQSGF-VSVDIDVTERD 784

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            V+  + D+G GM+   L+    PF Q  ++   R  GTGLGL +   +V    G   I 
Sbjct: 785 MVM-NISDSGEGMSPEFLKTVFDPFVQADSTIARRYGGTGLGLAIVHDLVKVMKGDITID 843

Query: 796 STPAKGTLIEIIFPLYDTSH 815
           S   KGT I++  P+   S+
Sbjct: 844 SEQGKGTSIQVTIPIQVESY 863


>gi|257468826|ref|ZP_05632920.1| multi-sensor signal transduction histidine kinase [Fusobacterium
           ulcerans ATCC 49185]
          Length = 620

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 91/376 (24%), Positives = 166/376 (44%), Gaps = 45/376 (11%)

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
           E  +  +I+E+ SDGI + ++E  IL  N A  KL      ++L K F   +       +
Sbjct: 269 EKSKAEAIVESISDGIIVTDKENKILLINNAAEKLLNVEESELLDKSFLTAIP---NRKI 325

Query: 510 NHYLTEILSLDLRQT----LEKITLGSTKEEKLLSLRI--IIKKLPFSSCYSLTMHDISE 563
              +TE+ + +  ++    LE     + ++     + I  II K   +      + DI++
Sbjct: 326 YDSITEVKNNNDIKSTFKQLEISLNSNVEKNIYCRVFINSIIGKNKENLGIVTLLQDITK 385

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            K+                  KSDF++ VSHE RTPLT++    E++ +   G + N   
Sbjct: 386 LKEI--------------DQMKSDFVSTVSHEFRTPLTSMGMAVELLGDGSVGTI-NETQ 430

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            E    I      +  ++ DLLD+S++ESGK ++ FE  S+ + V  A++ ++ ++  + 
Sbjct: 431 KELLKVIKEDNERLNFLIRDLLDLSRLESGKTHMKFEECSIKKIVETAVNSLKNFSENRN 490

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSN---------AIHF-TPS-GGQIIISTTHT 732
           + I      +   + ADL  +                   AI + +    G II+     
Sbjct: 491 VKIEIRNIKDSFLVFADLNKIL---------LVLTNLLTNAIKYKSEEREGNIIVE-AFK 540

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
             + +++ V+D G G+     EK    F Q+  S   + EGTGLGL + K ++ A+ G+ 
Sbjct: 541 KGKNIVVSVKDNGKGIPEEYKEKIFNKFIQVKISNDGKIEGTGLGLSICKEIIKAHGGEI 600

Query: 793 YIFSTPAKGTLIEIIF 808
           ++ S   KG++     
Sbjct: 601 WVDSVLNKGSIFYFSL 616


>gi|302038879|ref|YP_003799201.1| putative hybrid sensor histidine kinase [Candidatus Nitrospira
           defluvii]
 gi|300606943|emb|CBK43276.1| putative Hybrid sensor histidine kinase [Candidatus Nitrospira
           defluvii]
          Length = 786

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 80/450 (17%), Positives = 155/450 (34%), Gaps = 40/450 (8%)

Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
                I        +   +  +                      ++ E ++ R  +    
Sbjct: 216 RLNQEITKEIHDRRVIEEQLRTAQTDLGQRITERTADLAQANARLQNEVLEHRRTEGARL 275

Query: 449 IEVMQLCSILEATSDGIAIINREG-IILSTNRAVSKLFGYPVEDILRKP--FTVFLEQNT 505
               +   + +  + G+         +L  N A  +++G P       P  +  F+  + 
Sbjct: 276 SSEKRFNYLTDNLNQGVWFAQANPPQVLYVNPAFERIWGLPAARFYENPKLWRDFIHPDH 335

Query: 506 PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS----LTMHDI 561
             V++      ++    + L  +      + ++  +   +     ++           DI
Sbjct: 336 RQVVSEVYDAEIANPTGRDLHLLYRIIRPDGQVRWIHDRMVIHHTATGEVDNLSGITEDI 395

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           +E ++ +++L  A+K+              V+H+    +T I+G+S V+  +      N 
Sbjct: 396 TEARELEDQLRQAQKM-----EAVGRLAGGVAHDFNNVMTVILGYSAVLLQELS---QNS 447

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
               +   I R+G     +   LL  S+    K  LH   + L   + + ++L++    E
Sbjct: 448 SARYFVQEIQRAGERCAALTGQLLAFSR----KQMLHPVSLDLHRVIRDLMALLKSLIGE 503

Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT----------- 730
             I I          + AD   ++Q+ LN+  NA    P GG + I T            
Sbjct: 504 H-ISIVLQLDPLPLWVKADAVQLEQVLLNLAVNARDAMPHGGTLTIDTRQVSREEVWGTD 562

Query: 731 ---HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
               T+   V LRV DTG G+      K  +PF          G GTGLGL     +V  
Sbjct: 563 HDSRTARTYVRLRVHDTGTGIDPATKAKIFEPFFTTKPP----GRGTGLGLSTVYGIVHQ 618

Query: 788 NMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
           + G   + S   +GT + +  P  +   PH
Sbjct: 619 SGGTITVESAVGQGTTMSVFLP--EVVPPH 646



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/284 (10%), Positives = 77/284 (27%), Gaps = 23/284 (8%)

Query: 235 RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTI--NLNQYTKKQYFGTL 292
           R++ +  +L      + + ++     +          +E   T   +L Q   ++     
Sbjct: 195 RLQLEKVALARSLTARTEAVERLNQEITKEIHDRRVIEEQLRTAQTDLGQRITERTADLA 254

Query: 293 QNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG--NLFYANPSFLL 350
           Q N++   E L HR         +          D      +        + Y NP+F  
Sbjct: 255 QANARLQNEVLEHRRTEGARLSSE---KRFNYLTDNLNQGVWFAQANPPQVLYVNPAFER 311

Query: 351 LTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENS 410
           +    +    E        +        + +    +       +     L+ I       
Sbjct: 312 IWGLPAARFYENPKLWRDFIHPDHRQVVSEVYDAEIANPTGRDLHL---LYRIIRPDGQV 368

Query: 411 LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINR 470
             +            E    +GI  +  + R  + ++  +  ++ ++             
Sbjct: 369 RWIHDRMVIHHTATGEVDNLSGITEDITEARELEDQLR-QAQKMEAVGRLAG-------- 419

Query: 471 EGIILSTNRAVSKLFGYPV---EDILRKPFTVFLEQNTPSVMNH 511
            G+    N  ++ + GY     +++ +     +  Q        
Sbjct: 420 -GVAHDFNNVMTVILGYSAVLLQELSQNSSARYFVQEIQRAGER 462



 Score = 39.2 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 34/340 (10%), Positives = 69/340 (20%), Gaps = 22/340 (6%)

Query: 48  SFEQSNFTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDA--HGYL---------K 96
           +   ++    N    +                    RF +  D    G            
Sbjct: 247 TERTADLAQANARLQNEVLEHRRTEGARLSSEK---RFNYLTDNLNQGVWFAQANPPQVL 303

Query: 97  EISEELPKTIGNYAFKMI--GMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWP-IE 153
            ++    +  G  A +         D     H    + + D      T      L+  I 
Sbjct: 304 YVNPAFERIWGLPAARFYENPKLWRDFIHPDHRQVVSEVYDAEIANPTGRDLHLLYRIIR 363

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKG 213
                  I    +  ++   E     G  I        +      R  +K   +  +  G
Sbjct: 364 PDGQVRWIHDRMVIHHTATGEVDNLSG--ITEDITEARELED-QLRQAQKMEAVGRLAGG 420

Query: 214 HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE 273
            +        +    S      +     S   Y+  +          L     +   +Q 
Sbjct: 421 VAHDFNNVMTVILGYSAVLLQELSQN--SSARYFVQEIQRAGERCAALTGQLLAFSRKQM 478

Query: 274 DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPF 333
                       +     L++   E    +   +   L    D  +              
Sbjct: 479 LHPVSLDLHRVIRDLMALLKSLIGEHISIVLQLDPLPLWVKADAVQLEQVLLNLAVNARD 538

Query: 334 FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
            +   G L            + +  D   A     L    
Sbjct: 539 AMPHGGTLTIDTRQVSREEVWGTDHDSRTARTYVRLRVHD 578


>gi|254788363|ref|YP_003075792.1| phosphate regulon sensor kinase PhoR [Teredinibacter turnerae
           T7901]
 gi|239918942|gb|ACS34816.1| phosphate regulon sensor kinase PhoR [Teredinibacter turnerae
           T7901]
          Length = 439

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 85/426 (19%), Positives = 170/426 (39%), Gaps = 35/426 (8%)

Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV--MQ 453
             ARL       E+ +  T     + N       +   +   +  R  K K+ ++    +
Sbjct: 41  FGARLMLRISELESWVEATRQRGLQENNLEGVWAEIAEDVVLIIRRYEKDKLRLQQVVER 100

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
           +  +  A +DG+ I+++   I   NRA    F +   DI  K                ++
Sbjct: 101 VQQMTAALTDGVIIVDKHHNIEWWNRAAEMQFDFQPLDIGHKVTNYLRNP-------KFI 153

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH 573
                 D ++ L+  T     E + L   I            +   D++     +     
Sbjct: 154 KYYEGGDYKEPLD--TYSVRHEGQHLQFFIHPF---GDGDRLIIARDVTRVANLE----- 203

Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
                      + DF+A VSHE+RTPLT + G+ E + +    P    R+ +    +   
Sbjct: 204 ---------RMRQDFVANVSHELRTPLTVLSGYLETLADTGVLP---ERWDKPMGQMLEQ 251

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693
            + +  ++NDLL +S++E+   +    PV L   + + ++  +  + E+      +    
Sbjct: 252 TSRMNRLINDLLTLSRLETDDRDFGQRPVPLLPLLEQIVAEGRALSGERGHEFLINCGEG 311

Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753
           I  I+     ++    N++ NA+++TP G ++ I   ++   E++L+V+D G G+ +  +
Sbjct: 312 I-EIMGQEDELRSAIANLVYNAVNYTPDGKKVSI-LVNSDPHELVLKVKDNGEGIESRHI 369

Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
            +  + F ++   +     GTGLGL + K ++  +     I S   KG+     FP+   
Sbjct: 370 PRLTERFYRVDAGRSRETGGTGLGLAIVKHILLRHDADLKIRSKVGKGSTFSCHFPIKRV 429

Query: 814 --SHPH 817
             S P 
Sbjct: 430 IQSSPE 435


>gi|317127471|ref|YP_004093753.1| ATP-binding region ATPase domain protein [Bacillus cellulosilyticus
           DSM 2522]
 gi|315472419|gb|ADU29022.1| ATP-binding region ATPase domain protein [Bacillus cellulosilyticus
           DSM 2522]
          Length = 1098

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 72/255 (28%), Positives = 127/255 (49%), Gaps = 8/255 (3%)

Query: 563 EWKQEKNKLSHAKKIAEK----ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
           E +Q + ++  +   A +        K +FLA  SHE+RTPL  +IG +E + +   G +
Sbjct: 403 EKEQAEQEVIKSNLRALENLKKTDKLKDEFLAMTSHELRTPLHGMIGIAETMYDGATGKM 462

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
                 ++ + I  SG  +  ++ND+LD S +++  MNLH + V L E V   I + Q  
Sbjct: 463 T-QSMKKHLSMIISSGKRLSHLINDILDFSILKNDAMNLHLKKVHLKELVDVVIIMSQSL 521

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI 738
            NEK I I      NI  +L D   ++Q+  N++ NAI +T  G  +I  +     + + 
Sbjct: 522 LNEKNIRIINEIDTNIRPVLGDENRLQQVFFNLIGNAIKYTERGTVVI--SAEEDGKMLQ 579

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           + + D+G+G++  +++     F +  N       GTGLGL + K +++A+ G   + S  
Sbjct: 580 VHITDSGIGISADQIDTIFDAFNRGGN-NSEEQSGTGLGLNITKKLIEAHGGNISVVSQE 638

Query: 799 AKGTLIEIIFPLYDT 813
            KG+    + PL+  
Sbjct: 639 GKGSTFSFLIPLFQE 653



 Score =  236 bits (601), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 71/304 (23%), Positives = 135/304 (44%), Gaps = 23/304 (7%)

Query: 527  KITLGSTKEEKLLSLRII-----IKKLPFSSCYSLTMHD-----ISEW----KQEKNKLS 572
            +  L  TK    LSL +      +++L   +   L ++D     + E     K+  ++L 
Sbjct: 800  RELLSRTKTLIELSLAVRKIKEQMRELDDVNQRLLQINDELEGKVRERTVALKEVNDELL 859

Query: 573  HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
             A +   K  + ++  L+ +SHE  TP+T +  + + ++              Y   ++ 
Sbjct: 860  KANEDLIKLQNARTHMLSNISHEFGTPVTFLQSYIQSVRAGIIEAND----AHYLKSVEN 915

Query: 633  SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF-- 690
              N++  ++ DL DISK+ESG + L  +  +L E +++     +     ++I +      
Sbjct: 916  KVNMLNRLIEDLYDISKLESGDITLMTKERNLHEWINQMYDKFETDVTRRKITLHKPVFT 975

Query: 691  --ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748
                   RI  D   + Q+  NI+ NAI  T  GG I I+      +EV++ ++D G G+
Sbjct: 976  GNEEQDIRIDIDNDRMDQVFTNIIYNAIKHTNEGGDIWINVVVKDRQEVMIEIKDNGHGI 1035

Query: 749  TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
               +L    + F +       +  GTGLGL ++K ++  + G+  + ST   G +  I  
Sbjct: 1036 KESDLPFVFERFFKGEKVINGKI-GTGLGLAISKEIIHHHNGEISVKSTEGNGAIFCISL 1094

Query: 809  PLYD 812
            P+ D
Sbjct: 1095 PIVD 1098


>gi|212638129|ref|YP_002314649.1| signal transduction histidine kinase [Anoxybacillus flavithermus
           WK1]
 gi|212559609|gb|ACJ32664.1| Signal transduction histidine kinase [Anoxybacillus flavithermus
           WK1]
          Length = 474

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 71/374 (18%), Positives = 135/374 (36%), Gaps = 46/374 (12%)

Query: 465 IAIINREGIILS---TNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
             +++  G ++     N+ +  L             +             Y+   +    
Sbjct: 114 FYVVDTRGRLMMGDEVNKGLRPLL-----------LSTLQPWTPEKNELRYVEVTIPHHR 162

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA--- 578
            +           E K+L+    I              D++   +     +         
Sbjct: 163 HELK----RFRADELKILTAARPIIIDRQLIGVLYVGMDVTSMFRLLKWSTFILLSLGIL 218

Query: 579 --------------------EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
                               +   + +  F+A  SHE+RTPL+ I    E +K       
Sbjct: 219 FIAVAIAFSYFMSKRALVPIQDAYNRQRQFVADASHELRTPLSVIYSSVEALKMDASLT- 277

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
            +P   +    +      +  ++NDLL +++ +  K+ +  +P  L       +  +Q  
Sbjct: 278 SDPFSQKTIERLGDETKRMTKLINDLLTLARTDDAKLQIERKPFELRACAERTLQSLQEL 337

Query: 679 ANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT---HTSNE 735
           AN+K I ++   +  I  +  D     Q+   +L NAI +TP GG + +S         +
Sbjct: 338 ANKKNITLQFHASEQIEFV-GDEDKCTQLLYILLDNAIKYTPEGGTVSLSLAQHVIKQRK 396

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            V + V DTG+G+    L +    F +   ++  +  G GLGL +AK +V+A+ G  ++ 
Sbjct: 397 VVTMSVADTGIGIAPEHLPRIFDRFYRADKARTRQIGGHGLGLSIAKWIVEAHEGNIHVE 456

Query: 796 STPAKGTLIEIIFP 809
           S   KGT   I FP
Sbjct: 457 SEVGKGTTFTITFP 470


>gi|255013618|ref|ZP_05285744.1| putative two-component system sensor histidine kinase [Bacteroides
           sp. 2_1_7]
          Length = 364

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 96/346 (27%), Positives = 159/346 (45%), Gaps = 27/346 (7%)

Query: 481 VSKLFGYPVEDILRKPFTVFL------EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
             + +   + ++   P +  +      +      +   L+ ++        ++       
Sbjct: 36  AMEQWYLNMGEVPGTPLSQIVGIYSNVKPEDRECLKTSLSRLV-HGETDHDQREARVKDG 94

Query: 535 EE-KLLSLRIIIKKLPFSSCYSLTMH-DISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
           E  K + L I+   L  SS   L M+ DISE K  + ++      AEK    KS FLA +
Sbjct: 95  EGWKWIRLDIMEAGLEKSSPILLLMNYDISELKAMEERML----KAEKSERLKSSFLANI 150

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHEIR PL AI+GFS ++ ++  G L      EY N I  +  L+L IVND+LD++K+ES
Sbjct: 151 SHEIRMPLNAIVGFSSLLGDEEDGEL----RQEYINLIQTNNELLLGIVNDVLDLAKLES 206

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712
           G M   F    L + + E ++  Q+      + +    + +   + +D   +KQ+  N +
Sbjct: 207 GTMTFDFMEFDLRQLIVETVASFQIKVPR-GVALTYPASLDSFLLRSDRIRLKQVLGNFI 265

Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           +NAI +T  G  II+S     N EV+L V DTG GM+          F +  N    + +
Sbjct: 266 TNAIKYTSIGS-IILSYQAMEN-EVLLSVTDTGEGMSEEIKLHVFDRFYKGRN----QKQ 319

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
           G GLGL + + +V+   G+  + S   KG+      P++    P D
Sbjct: 320 GIGLGLSICQNIVERLGGRIGVSSEQGKGSCFWCTLPIFP---PKD 362


>gi|307152390|ref|YP_003887774.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306982618|gb|ADN14499.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 999

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 74/241 (30%), Positives = 129/241 (53%), Gaps = 6/241 (2%)

Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
           +  L  A + AE  +  KS+FL+RVSHE+RTPL AI+G+S+++         +P+  EY 
Sbjct: 516 QTALQKAAERAEIANRAKSEFLSRVSHELRTPLNAILGYSQLMNRN---TSLSPQQKEYI 572

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
             I+RSG  +L ++ND+L++SKIE+G+  L+     L   +       QL A+ K++ + 
Sbjct: 573 EIINRSGEHLLSLINDVLEMSKIEAGQQTLNENSFDLYALLDSIEKTFQLKASAKKLGLI 632

Query: 688 TSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILRVRDTG 745
              + ++P+ ++ D   ++Q+  N+L NAI FT +G   + ++T      ++   V DTG
Sbjct: 633 FQRSQDVPQFVVTDESKLRQVLFNLLDNAIKFTQTGNVTLWVTTKEAPCLKIFFSVSDTG 692

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
            G+   EL     PF Q         +GTGLGLP+++  ++   G+  + +    G+   
Sbjct: 693 PGIAESELSVLFDPFVQTQAGL-KSMQGTGLGLPISRQFIELMGGELTVNTQLGSGSTFS 751

Query: 806 I 806
            
Sbjct: 752 F 752


>gi|42522105|ref|NP_967485.1| sensory transduction histidine kinase [Bdellovibrio bacteriovorus
           HD100]
 gi|39574636|emb|CAE78478.1| Sensory transduction histidine kinase [Bdellovibrio bacteriovorus
           HD100]
          Length = 766

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 75/252 (29%), Positives = 123/252 (48%), Gaps = 10/252 (3%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I++ K+   +L  ++  AE  +  KS FL+ +SHEIRTPL A++G +E++         N
Sbjct: 353 IAQDKEALARLQDSRDRAEAATRAKSLFLSTMSHEIRTPLNAMLGSAELLNETHL----N 408

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
               E    +  +G+ +L ++N++LD SK ESG+M L      L + V E  +L+     
Sbjct: 409 FEQKELLISLQSAGDTLLSMLNNILDFSKFESGRMQLESREFLLSDLVREVQALISTSVL 468

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---- 736
            K +        +   I+ D   +KQ+ +N+L NA+ FT  G  I ++       E    
Sbjct: 469 RKNLQFTFHPPEHDRWIVGDSLRLKQVLMNLLGNAVKFTDRGA-IELTVQPYPGSEPGKE 527

Query: 737 -VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            +   V+DTG+G+    L+K    FGQ  +S   R  GTGLGL +++ +V    G+ Y  
Sbjct: 528 TIFFEVKDTGIGIAKENLKKVFDEFGQEDSSVTRRFGGTGLGLSISQKIVQLMGGELYCE 587

Query: 796 STPAKGTLIEII 807
           S    G+     
Sbjct: 588 SRQFVGSRFHFS 599


>gi|15640331|ref|NP_229958.1| sensor histidine kinase [Vibrio cholerae O1 biovar El Tor str.
            N16961]
 gi|121591058|ref|ZP_01678371.1| sensor histidine kinase [Vibrio cholerae 2740-80]
 gi|153819600|ref|ZP_01972267.1| sensor histidine kinase [Vibrio cholerae NCTC 8457]
 gi|153822839|ref|ZP_01975506.1| sensor histidine kinase [Vibrio cholerae B33]
 gi|227080517|ref|YP_002809068.1| sensor histidine kinase [Vibrio cholerae M66-2]
 gi|229506900|ref|ZP_04396408.1| sensor histidine kinase [Vibrio cholerae BX 330286]
 gi|229509273|ref|ZP_04398756.1| sensor histidine kinase [Vibrio cholerae B33]
 gi|229516217|ref|ZP_04405665.1| sensor histidine kinase [Vibrio cholerae RC9]
 gi|229606413|ref|YP_002877061.1| sensor histidine kinase [Vibrio cholerae MJ-1236]
 gi|254851437|ref|ZP_05240787.1| sensor histidine kinase [Vibrio cholerae MO10]
 gi|255744101|ref|ZP_05418055.1| sensor histidine kinase [Vibrio cholera CIRS 101]
 gi|262161993|ref|ZP_06031010.1| sensor histidine kinase [Vibrio cholerae INDRE 91/1]
 gi|298500935|ref|ZP_07010737.1| sensor histidine kinase [Vibrio cholerae MAK 757]
 gi|9654715|gb|AAF93477.1| sensor histidine kinase [Vibrio cholerae O1 biovar El Tor str.
            N16961]
 gi|121547091|gb|EAX57226.1| sensor histidine kinase [Vibrio cholerae 2740-80]
 gi|126509856|gb|EAZ72450.1| sensor histidine kinase [Vibrio cholerae NCTC 8457]
 gi|126519657|gb|EAZ76880.1| sensor histidine kinase [Vibrio cholerae B33]
 gi|189008649|gb|ACD68566.1| sensor histidine kinase [Vibrio cholerae C6706]
 gi|227008405|gb|ACP04617.1| sensor histidine kinase [Vibrio cholerae M66-2]
 gi|229346643|gb|EEO11613.1| sensor histidine kinase [Vibrio cholerae RC9]
 gi|229353588|gb|EEO18525.1| sensor histidine kinase [Vibrio cholerae B33]
 gi|229356005|gb|EEO20924.1| sensor histidine kinase [Vibrio cholerae BX 330286]
 gi|229369068|gb|ACQ59491.1| sensor histidine kinase [Vibrio cholerae MJ-1236]
 gi|254847142|gb|EET25556.1| sensor histidine kinase [Vibrio cholerae MO10]
 gi|255738366|gb|EET93757.1| sensor histidine kinase [Vibrio cholera CIRS 101]
 gi|262028371|gb|EEY47027.1| sensor histidine kinase [Vibrio cholerae INDRE 91/1]
 gi|297540439|gb|EFH76498.1| sensor histidine kinase [Vibrio cholerae MAK 757]
          Length = 1147

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 89/497 (17%), Positives = 202/497 (40%), Gaps = 52/497 (10%)

Query: 354  YKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAM 413
            Y+S   +     L++         N   +     R   T +        +  + E  LA 
Sbjct: 530  YQSRVTVGELEMLASRFVGRTRVRNAFAQYWSQQR--ETLLPNQQASSALIRHTERVLAG 587

Query: 414  TFIPFEKANQFPENMPQNGIEPEDVDTRINKR-KM-EIEVMQLCSILEATSDGIAIINRE 471
             F            +    ++ E+V T +++  ++ +     L   +E    GIA+++++
Sbjct: 588  VFGASSAKLVLTSALQGRKMQLEEVATIVDEASELYDFSRGLLQGAIEHIGQGIAVVDKQ 647

Query: 472  GIILSTNRAVSKLFGYPVEDI-LRKPFTVFLEQNTPSVM------NHYLTEILSLDLRQT 524
              +++ N+   +LF +P   I + +P    +  N    +        ++   +    + T
Sbjct: 648  LRLVAWNQRYLELFEFPPGLIQVGRPIADVIRHNAQQGLCGPGDPEDHVRRRVYHLEQGT 707

Query: 525  LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE--- 581
                +     + +++ ++           + ++  DI+ +++ +  L  A +  E+    
Sbjct: 708  SHTSSRVR-ADGRVIEVQGNPMP---GGGFVMSFTDITVFREAEQSLKMANETLEERVLQ 763

Query: 582  ----------------------SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
                                  S  KS FLA VSH++  PL A   F+  +         
Sbjct: 764  RTLELEKLNKQLVTATQRSERESQSKSRFLAAVSHDLMQPLNAARLFASSLSE----VAK 819

Query: 620  NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
                 + A++I+ +     D+++DLLDIS++ESGK++LH    ++ + +S   +     A
Sbjct: 820  EAEVQKLAHHIESALGAAEDLISDLLDISRLESGKIDLHPHSFAIMDVLSNLNAEFSALA 879

Query: 680  NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
             ++ +    S   ++  + +D + ++++  N L+NA  + P+G ++I+     +  +V +
Sbjct: 880  AKQGVQF--SLVPSLLWVHSDPKLLRRVIQNFLTNAFRYNPNG-KVILGVRRVATGQVRI 936

Query: 740  RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
             V D G+G+   + ++  + F +    Q    +G GLGL ++K +         + S P 
Sbjct: 937  DVWDNGIGIEQDKQQEIFEEFNR--GGQVRSDQGLGLGLAISKGIAHVLGHHISMRSWPG 994

Query: 800  KGTLIEIIFPLYDTSHP 816
            +G++  I     D + P
Sbjct: 995  QGSVFSITL---DRAQP 1008


>gi|222109842|ref|YP_002552106.1| histidine kinase [Acidovorax ebreus TPSY]
 gi|221729286|gb|ACM32106.1| histidine kinase [Acidovorax ebreus TPSY]
          Length = 1137

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 91/626 (14%), Positives = 211/626 (33%), Gaps = 35/626 (5%)

Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE 245
           + R     +    +L    +          ++++E     + ++     +   + +    
Sbjct: 93  MTRGSLLEQQRFDQLQGLATKRMTELAHIVALQREGRREEALEAMRGDGQATMETTRTLV 152

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
                 +  + +    +      +     + +  +                +        
Sbjct: 153 REMLNTEQQQLQAQREVWEGAFGISAYLTWGSAAVLLLLTCASAVMTMAEYRSREVE--- 209

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365
            N    +           + +         Y    L     +  +   +   + +     
Sbjct: 210 -NWIKGNLVRLGTRLQGEQRIHDMAGAVIGYLATELDARVGAIYVTQGHGVFERMGGYAL 268

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
                 A   +    +   +  R+ +      +    +      +     +         
Sbjct: 269 APDTGPAAVRAGEGLLGQALQSRTLQHVRHVPSGYLPVTSGTGQATPAELVMMPIVL-NG 327

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
             +    +             +     QL   +         ++R   +     ++    
Sbjct: 328 VALAVVEMGWFRTVAPHEVDFLVRAGEQLAQAVRGA------LDRS-RL----ESLLDET 376

Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
               E++  +   + +        +  L E  +L   Q  E              L    
Sbjct: 377 QRQAEELQAQQEELRVNNEELEQQSRMLQESQNLMQAQQAELE-------HSNAQLEAQT 429

Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
           ++L +     LT  D  E K          +   + S +KS+FLA +SHE+RTPL + + 
Sbjct: 430 EQLQYQKQRLLTAQDALEAKA---------RDLAQASQYKSEFLANMSHELRTPLNSSLI 480

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
            ++++ + +   L   +   YA  I  +G  +L+++ND+LD+SKIE+G+ ++    V++ 
Sbjct: 481 LAKLLADNKQQNLTAEQVR-YAQTIHNAGTDLLNLINDILDLSKIEAGQTSVEIGQVTVA 539

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQ 724
           + V+  +  ++  A +K +         +P  I +D + + QI  N+LSNA+ FT  G +
Sbjct: 540 KVVAGVMEPLRAQAQDKGLQFNAVVEPGVPAFITSDAQRLAQILKNLLSNALKFTARG-E 598

Query: 725 IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
           + +      N+ +   VRDTG+G+   + E+    F Q   S   +  GTGLGL +++ +
Sbjct: 599 VTLRVFAGDNDTLCFAVRDTGIGIAPDQQERIFDAFHQADGSTHRKYGGTGLGLSISRDL 658

Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPL 810
                G   + S P +G++  +  P+
Sbjct: 659 AQLLGGSIAVQSAPGEGSVFTLTLPV 684


>gi|254474100|ref|ZP_05087492.1| sensory/regulatory protein RpfC [Pseudovibrio sp. JE062]
 gi|211956796|gb|EEA92004.1| sensory/regulatory protein RpfC [Pseudovibrio sp. JE062]
          Length = 867

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 73/227 (32%), Positives = 123/227 (54%), Gaps = 8/227 (3%)

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
           + FL  VSHE+RTPL AIIG  ++I++ +     +P   + A  I  SG+ +L ++N +L
Sbjct: 200 TQFLTAVSHELRTPLNAIIGMGDLIQDTKL----DPEQRDMAKTIQYSGSSLLSMINGIL 255

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSV 704
           D S+IESG+M ++     ++  + E   +VQ  A  K ++I     + +P  ++ D R +
Sbjct: 256 DFSRIESGRMIVNRTVFDMNSILREVTQIVQGQARGKGLIISRYVDSKLPPFLVGDARHI 315

Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNE---EVILRVRDTGVGMTNYELEKAMKPFG 761
           +++ LNI  NA+ FT  G   I +T    N     ++L V+DTG+G++     +  + F 
Sbjct: 316 REVLLNIAGNAVKFTEEGSVSISATCKEMNGGKVSLLLEVKDTGIGISEDAQGRIFERFT 375

Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           Q   S   R  GTGLGL + + +V A  G+  + S P +G++  I  
Sbjct: 376 QADESIVDRFGGTGLGLSIVREVVRAMGGEVKVSSQPGQGSMFTIEL 422


>gi|153809580|ref|ZP_01962248.1| hypothetical protein BACCAC_03898 [Bacteroides caccae ATCC 43185]
 gi|149127783|gb|EDM19007.1| hypothetical protein BACCAC_03898 [Bacteroides caccae ATCC 43185]
          Length = 917

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 117/741 (15%), Positives = 254/741 (34%), Gaps = 43/741 (5%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK-TT 148
           DA+G L++I+++  K  G      +  ++   +       +  +   ++R      +   
Sbjct: 46  DANGILRKINDKALKMYGVSDRTTVIGKVNLFNSPYM---DKELKSKIQRGEDVTLEFEY 102

Query: 149 LWPIEGTNLY--------VPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
            +    ++ Y        +  +   +P+        G     + +      +     +  
Sbjct: 103 DFDRINSDAYFCSQNKNSIIYEAQVVPVLDDKGTIIGH--ILLSNDVTSAKEIEFRTEES 160

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
            K      E     S V       FS        + +  +  + +   H  D ++  +  
Sbjct: 161 KKNLEMAMEAANMASWVYNVHKKTFSTLHGNALAKEEMSLEQM-QSILHPQDRIQLMQLF 219

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
                + +          N  +   + Y   ++ +S+   + L       ++      + 
Sbjct: 220 AQLINKETQQVHTTLRFYNKEERQYRHYESRMRLSSEHRGKLLIVGTQLDVTDKVQMLKK 279

Query: 321 LTPET----VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
               T    +         +          S+       + + +       ++   P   
Sbjct: 280 TQDLTTKRELAMQVSNIVHWDFDVSTQKFESYNDPINDYAPNRLVTLKEFESV-VHPDDR 338

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
                    +   +   +  + R+ T          +  +PF + ++    +   G    
Sbjct: 339 STYFDAIQSMLSGENETVNFTCRMQTKYDETWQYCNVIGVPF-EQDENGNTIRFTGFRQN 397

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI-ILSTNRAVSKLFGYPVEDILRK 495
                    +++    ++    +         +  G    + N  V+        D+ + 
Sbjct: 398 ISKLHRLNEELKERNYKMELTFKTVGMSYWDFDVTGRKFTAFNDPVNDYHPETPIDVDQ- 456

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK-EEKLLSLRIIIKKLPFSSC- 553
            +      +   ++  Y   ++     Q         TK  ++  +L I   ++      
Sbjct: 457 -YLSAAHPDDRELVRKYFEGMIE-GKEQEFNFQYRSKTKWNKEWQTLIITGIQVERDKRG 514

Query: 554 ----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
               Y+    + ++W++   +L   K  AE     KS FLA +SHEIRTPL AI+GFS +
Sbjct: 515 KIIRYTGIGFNNTKWEKMAQELKILKDKAELSDRLKSAFLANMSHEIRTPLNAIVGFSGL 574

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           + N            EY   I+ + +L+L ++ND+LD+SKIESG +    E  +L +   
Sbjct: 575 MVNCD----DPEEKAEYMEIIESNNDLLLRLINDILDLSKIESGILERKREKFNLAKVSG 630

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
           E  +++Q       +      +     I  D   +KQ+ +N L+NA+  T SG    I  
Sbjct: 631 ELYTMIQPKITNPEVEFILGNSGPDCWIFLDRNRLKQVWMNFLTNAVKCTHSG---HIKM 687

Query: 730 THT-SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
            ++  N  + + V D+GVG+      +    F ++        +GTGLGL +++A+++  
Sbjct: 688 GYSLENGGIKVYVEDSGVGIPYEVQNRVFGRFQKL----NEFAQGTGLGLAISRAIIEGA 743

Query: 789 MGKFYIFSTPAKGTLIEIIFP 809
            G+    STP  G+      P
Sbjct: 744 GGEIGFTSTPGVGSTFWAWIP 764



 Score = 39.6 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 17/148 (11%), Positives = 45/148 (30%), Gaps = 14/148 (9%)

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
            +I  +    I + +  GI+   N    K++G      +     +F        +   + 
Sbjct: 32  ENIYASLPISIEVYDANGILRKINDKALKMYGVSDRTTVIGKVNLFNSPYMDKELKSKIQ 91

Query: 515 EILSLDLRQTLEKITLGSTK-----EEKLLSLRIIIKKLPFSS----CYSLTMHDISEWK 565
               + L    +   + S        +  +     +  +         + L  +D++  K
Sbjct: 92  RGEDVTLEFEYDFDRINSDAYFCSQNKNSIIYEAQVVPVLDDKGTIIGHILLSNDVTSAK 151

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVS 593
           + + +   +KK  E          A ++
Sbjct: 152 EIEFRTEESKKNLEMAMEA-----ANMA 174


>gi|33240871|ref|NP_875813.1| two-component sensor histidine kinase [Prochlorococcus marinus
           subsp. marinus str. CCMP1375]
 gi|33238400|gb|AAQ00466.1| Sensory protein [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
          Length = 690

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 76/391 (19%), Positives = 168/391 (42%), Gaps = 41/391 (10%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            ++    ++  S++   +DG  ++N +G I+  N    +LF +   ++  +     L + 
Sbjct: 290 EELRAAQVKQQSLIATMADGAILLNEKGKIVLVNPTARRLFRWEGRNLESQDLLDELPEL 349

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEE-KLLSLRIIIKKLPFSSCYSLTMHDISE 563
             + ++  +T IL+        + + G      +++   +           ++T+ D++ 
Sbjct: 350 IANELHPNITSILNNLCESDELRCSTGEPARTLRIVLQSVRDSSGSTLKGVAITIQDLTR 409

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
                           + ++ +  F++ VSHE+RTPL  I  + E + +     L +   
Sbjct: 410 --------------EVELNAIQRRFISNVSHELRTPLFNIKSYVETLHD-LDDKLDHKEK 454

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
           +E+    +   + +  +VND+LD+SKIE+   N++FE ++L  A+ + +   +L A +K+
Sbjct: 455 MEFLEVANSETDRLTRLVNDVLDLSKIETAG-NVNFEAINLAPAIDQTVRTYRLNAEDKK 513

Query: 684 ILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-------- 735
           + I      N+  IL +   + Q+  N++ NA+ F+ +GG+I++      +         
Sbjct: 514 VEISQEIEENMELILGNWDLLLQVLDNLIGNALKFSSAGGKIVLRAYTWPDTCITSSPKI 573

Query: 736 ---------------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
                           + + + DTG G++     +  + F ++ N       GTGLGL +
Sbjct: 574 DKKDAPSCEIIYPLPRLRIEIGDTGCGISEDSQLRIFERFYRVENDVHTEV-GTGLGLSI 632

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
            + +++       + S P  GT      PL 
Sbjct: 633 VREIIEKLGSNIRMVSIPGIGTTFWFDLPLA 663


>gi|329908338|ref|ZP_08274851.1| multi-sensor hybrid histidine kinase [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327546735|gb|EGF31680.1| multi-sensor hybrid histidine kinase [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 998

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 69/259 (26%), Positives = 133/259 (51%), Gaps = 8/259 (3%)

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
           +    +   +  + +L  AK +AE+ ++ +  FL+ VSHEIRTP+ A+IG S +++    
Sbjct: 326 VLWRVMRHREDVEVELKKAKIVAEQANAARGAFLSTVSHEIRTPMNAVIGMSGLLRETAL 385

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
               + +  E+   I+ S N ++ I++++LD S+I++GK+ +      L   V  +   +
Sbjct: 386 ----DAQQEEFTVAIEDSANALMVIIDEILDFSRIDAGKLTIEATDCHLLSLVEGSADAL 441

Query: 676 QLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTS 733
            + A ++ + +      ++P  +  D   ++Q+ LN++ NA+ FTP+G  +I++   +  
Sbjct: 442 AVKARQQGLRLLCFVEPDLPVTVSVDAGRLRQVLLNLIGNAVKFTPAGEVRILVRQVNRQ 501

Query: 734 NE--EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
           ++   V   V DTG+G+T   +     PF Q   S   +  GTGLGL + K +V+   G 
Sbjct: 502 HDLCTVRFEVADTGIGITAPVIALLFNPFVQADGSVTRKYGGTGLGLSICKRLVELMGGH 561

Query: 792 FYIFSTPAKGTLIEIIFPL 810
             + S P  G+      P+
Sbjct: 562 IGVDSKPGAGSTFWFELPV 580


>gi|319788477|ref|YP_004147952.1| multi-sensor hybrid histidine kinase [Pseudoxanthomonas suwonensis
           11-1]
 gi|317466989|gb|ADV28721.1| multi-sensor hybrid histidine kinase [Pseudoxanthomonas suwonensis
           11-1]
          Length = 1046

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 100/534 (18%), Positives = 192/534 (35%), Gaps = 46/534 (8%)

Query: 278 INLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS 337
           ++    T+ Q    L     ++   L+ +   S  A  +       +         +   
Sbjct: 103 VSQAIRTRHQAERALWLQQADNAVALALQGDLSPGAVAEAALRELCKLTGAQTGVLYQLG 162

Query: 338 HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397
              L       L     +S+           +   P++        V +  +     A  
Sbjct: 163 QEQLTLVGGVALARNVPESIPSGVGQLWEIVIRPEPRIVRGLDAAHVAVESALGESPARE 222

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
             L  +  +   + A+              +       E +   +   ++  E+++L   
Sbjct: 223 LLLAPVTADGVVNGALELGRTTHLANQELALELMRRCAEKIGIALRTARLRAELIEL--- 279

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
                                          +E+  R+   +  +Q    V N  L E  
Sbjct: 280 -------------------------------LEETQRQSEELQAQQEELRVANEELEEQS 308

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI 577
               +         +  E   + L     +L     Y +   D          L  ++  
Sbjct: 309 RTLQQSQANLEEQQAELEATNVQLEERTHELEAQRQYLIAARD---------DLLRSRAE 359

Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
               S +KS+FLA +SHE+RTPL + +  + ++   R G L N   ++YA  I  + N +
Sbjct: 360 LAAASRYKSEFLANMSHELRTPLNSALILARLLAENREGTL-NEEQVKYARAIHSANNDL 418

Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-R 696
           L ++ND+LD+S+IE+G + L  E +   + V       +  A +K + +R   A   P +
Sbjct: 419 LALINDILDLSRIEAGHVELVDETLHTPQLVERLRETFEPLAQQKGLELRMEIAPGAPAQ 478

Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKA 756
            LAD + ++Q+  N+L+NA+ FT  G  + +         +   V DTG+G+   + E  
Sbjct: 479 FLADGQRLQQVLKNLLANAVKFTEHGS-VALCIEGHGEGRIRFAVSDTGIGIAREQTEVI 537

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            + F Q   S   R  GTGLGL +++ + +   G   + S P +G+   +  P+
Sbjct: 538 FEAFRQADGSTSRRFGGTGLGLAISRDLAERMGGSLTVESEPGRGSCFTLELPV 591


>gi|220922552|ref|YP_002497854.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans
           ORS 2060]
 gi|219947159|gb|ACL57551.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans
           ORS 2060]
          Length = 766

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 81/452 (17%), Positives = 159/452 (35%), Gaps = 30/452 (6%)

Query: 384 VMLYRSDRTCIAASA---RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
           +           A A       +    +  LA+              +            
Sbjct: 185 MHYAAMQGAVFTAHAPVDHAQGVASLHQTYLALWVTGTTLLILILAQIAAVFDRHFAHRA 244

Query: 441 RINKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
                 +     +   +L + +D  I +++ EG + + N    ++ GY   +I+   F+ 
Sbjct: 245 EREAAALRESEERFRLLLRSVTDYAIFMLDTEGRVANWNAGAERIKGYSDREIVGTHFSR 304

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL--- 556
           F  Q   +        + +       E+      K+       ++I  +       +   
Sbjct: 305 FYTQEDQARGLPA-DALRTAASVGKFEQEGWRVRKDGSRFWASVVIDPVRDQDGRLIGYA 363

Query: 557 -TMHDISEWKQEKNKLSHAKKIAEKES--SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
               DI+E KQ ++ L  A+    +             V+H+    L+ ++   +V+K +
Sbjct: 364 KVTRDITERKQAQDALEQARDALFQAQKMEAVGQLTGGVAHDFNNLLSVVLASLDVLKKR 423

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
                 +P+     +  +++      +   +L  ++    + +L  + V L   V     
Sbjct: 424 L---PDDPKLRRLLDNAEQATQRGAALTQRMLAFAR----RQHLKPQAVDLASLVHGMSD 476

Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
           L+Q  +    + I T F  ++P ++AD   ++   LN+  NA    P GG I IS     
Sbjct: 477 LLQ-RSLGPTVQIETRFPLSLPVVMADAHQLELALLNLSVNARDAMPKGGAITISACEGD 535

Query: 734 -------NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
                     V L V DTG GM    L +A +PF          G+GTGLGL +   + +
Sbjct: 536 QPSDLGGGRYVCLAVADTGHGMDEATLARAQEPFFTTKG----IGKGTGLGLSMVHGLAE 591

Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
            + G+  + S   +GT  EI  P+   +   +
Sbjct: 592 QSNGRLVLKSRLGEGTTAEIWLPVASVAAEEE 623



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 35/335 (10%), Positives = 76/335 (22%), Gaps = 24/335 (7%)

Query: 69  DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID 128
           +SE  F       T    + +D  G +   +    +  G    +++G             
Sbjct: 253 ESEERFRLLLRSVTDYAIFMLDTEGRVANWNAGAERIKGYSDREIVGTHFSRFYTQED-Q 311

Query: 129 PNNHIGDLLKRQNTW-YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187
                 D L+   +    +   W +          +   P+  ++    G+       V 
Sbjct: 312 ARGLPADALRTAASVGKFEQEGWRVRKDGSRFWASVVIDPVRDQDGRLIGY-----AKVT 366

Query: 188 RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247
           R   + +     L++    L + +K  +  +          +    +     V       
Sbjct: 367 RDITERKQAQDALEQARDALFQAQKMEAVGQLTGGVAHDFNNLLSVVLASLDVLKKRLPD 426

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
             K   L            +       F      +         +   S      L    
Sbjct: 427 DPKLRRLLDNAEQATQRGAALTQRMLAFARRQHLKPQAVDLASLVHGMSDLLQRSLGPTV 486

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
                                  +P  +     L     + L L+        +      
Sbjct: 487 QIETRFP--------------LSLPVVMADAHQLEL---ALLNLSVNARDAMPKGGAITI 529

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT 402
           +  +  + SD    + V L  +D       A L  
Sbjct: 530 SACEGDQPSDLGGGRYVCLAVADTGHGMDEATLAR 564


>gi|325915224|ref|ZP_08177547.1| Hpt sensor hybrid histidine kinase [Xanthomonas vesicatoria ATCC
           35937]
 gi|325538584|gb|EGD10257.1| Hpt sensor hybrid histidine kinase [Xanthomonas vesicatoria ATCC
           35937]
          Length = 765

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 72/250 (28%), Positives = 119/250 (47%), Gaps = 10/250 (4%)

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + + +L  AK+ AE  +  K +FLA +SHEIRTPL  II   E+I + +          +
Sbjct: 92  ELEQELLRAKQAAEAATLAKGEFLATMSHEIRTPLNGIIPMLELISSGQLSL----DQRD 147

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
                  S   +L IV+D+LD SK+E+ K+ L     +L E +   + L+Q  A  +++ 
Sbjct: 148 MLQTATGSSLQLLRIVDDILDYSKLEANKLELEITTFNLRELLDGVVQLLQRTAESRQLR 207

Query: 686 IRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH----TSNEEVILR 740
           +      ++   +  D   ++Q+  N++ NAI FT  G  I I         +   +  +
Sbjct: 208 LGLDIEPSVRLLVRGDPIRLRQVLGNLIGNAIKFTERGS-IDIQLRRLGETRAQHLLRFQ 266

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           VRDTG+G+   +  +  + F Q   S      GTGLGL + K ++D   G+  + S P +
Sbjct: 267 VRDTGIGIAPDQQARLFRSFAQADASTTRLYGGTGLGLAICKRIIDLMGGRIGVESEPGR 326

Query: 801 GTLIEIIFPL 810
           G       PL
Sbjct: 327 GATFWFEIPL 336


>gi|260575598|ref|ZP_05843596.1| histidine kinase [Rhodobacter sp. SW2]
 gi|259022241|gb|EEW25539.1| histidine kinase [Rhodobacter sp. SW2]
          Length = 767

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 104/625 (16%), Positives = 206/625 (32%), Gaps = 80/625 (12%)

Query: 213 GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQ 272
               +E+    +  Q   P        V       A +    +  K  +   ++      
Sbjct: 72  REMRLERHLGGLMGQDGAPCFTTDAVGVIGFQNAIAVERFGAQDGKTLVAALQDHFASPS 131

Query: 273 EDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL--TPETVDKCP 330
                +       +     +      +   +            +E ++   +    +   
Sbjct: 132 AVLFRLQSRAMNHEAAREDVVTRRGHTRLAVHRIGPTRFLWRLEEFQDRTGSGRGAESLS 191

Query: 331 IPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389
           +P  + +  G + ++N +   L              L  +     L        V +   
Sbjct: 192 LPMMIANKTGVILFSNEAMRRLLG-------GRPKRLDRVFAEQTLRSGE---EVEVASV 241

Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449
           D       A L  +    E    +  +P  +  +   ++                     
Sbjct: 242 DG---PVRAILAEVDGVGER-REIYLMPVPERYEANSSLAD------------------- 278

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
                    E     +     +G ++S NRA   L     E+ L   F    E      +
Sbjct: 279 --------FEHVPVALMKFAADGSLISANRAARDLIHLGAEETLG--FRDLFEGLGR-SV 327

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN 569
           + +L ++ +  +    E + L     +    + +              ++D +  K  + 
Sbjct: 328 SDWLADVATERMPCGAEVLRLRRGDGDAFYQISLRRIVEHGRGSVLAVLNDATALKTLEA 387

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +   ++K+              ++H+    LTAI G  +++  +      +P Y +    
Sbjct: 388 QFVQSQKM-----QAIGQLAGGIAHDFNNLLTAISGHCDLLLLRHVQA--DPEYADLVQ- 439

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I ++ N    +V  LL  S+    K  L  E + L E +S+   L+      +R+ +R +
Sbjct: 440 IHQNANRAASLVGQLLAFSR----KQTLKPERLDLQEVLSDLTHLL-NRLVGERVNLRLA 494

Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT--------------HTSNE 735
            A ++  I AD R ++Q+ +N++ NA    P GG I I T                   E
Sbjct: 495 HAPDLGPIRADKRQLEQVVMNLVVNARDAMPEGGTIRIETEALTLRDELRRDRAVVPKGE 554

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
             ++RV DTG G+    L+K  +PF          GEGTGLGL  A  +V  + G  ++ 
Sbjct: 555 YAVIRVLDTGCGIPADRLQKIFEPFFTTK----RTGEGTGLGLSTAYGIVKQSGGFIFVD 610

Query: 796 STPAKGTLIEIIFPLYDTSHPHDCI 820
           S P  GT+  + FP++D   P + +
Sbjct: 611 SEPGLGTVFHLYFPIHDG--PEEAV 633


>gi|224370332|ref|YP_002604496.1| predicted fusion protein, periplasmic substrate-binding protein
           (N-terminal) / sensory box regulatory protein
           (C-terminal) [Desulfobacterium autotrophicum HRM2]
 gi|223693049|gb|ACN16332.1| predicted fusion protein, periplasmic substrate-binding protein
           (N-terminal) / sensory box regulatory protein
           (C-terminal) [Desulfobacterium autotrophicum HRM2]
          Length = 926

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 79/557 (14%), Positives = 176/557 (31%), Gaps = 49/557 (8%)

Query: 272 QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI 331
                 +             ++  +    + L+            + E          P 
Sbjct: 264 LPLLGLVAAGFVWSLMLLRQIKGKTARLSDELA--ERTLAEQRLKKSEEEIKSIFRAVPT 321

Query: 332 PFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDR 391
              V     +  AN     +T +   + I      S  L  P  +  + +      + D+
Sbjct: 322 GIGVVCDRKIIQANEQLARVTGFSRDELIGQ----SARLLYPNEARYDHVGLEKYQQIDQ 377

Query: 392 TCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV 451
             I  +      + +      +        +    +        +  D +  + ++    
Sbjct: 378 VGI-GTVETQWQRKDGRLIDVLLSS--TPIDLEDLSRGVTFAALDITDLKAKESQLLESE 434

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
            +  +I+ +  + + I + + +I   N  + +  GY   D   +     +   +      
Sbjct: 435 KKYQAIMGSMKEPVYITSEDYLIEYMNPTMIQRTGY---DATGEDCFTAIHGFSERCPWC 491

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS-CYSLTMHDISEWKQEKNK 570
               I +   ++      + S K+     +          +      + D +  KQ + +
Sbjct: 492 EFDTIKNGSTQEMD----IVSFKDNHSFHVSATPIAHANGTVSMLNVLRDTTRMKQIEAQ 547

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           L  A+K+              ++H+    L+ I G+S++ +     P    +   +   I
Sbjct: 548 LQQAQKL-----EAVGVLAGGIAHDFNNILSGIFGYSKLAERHIDNPT---KAKSHIRQI 599

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
            +      +++  +L  S+    K     + + L   V E + L++       ++     
Sbjct: 600 IKGSQRAAELIQQILAFSR----KTEPKMQVLILSTVVKEILDLIRSSIPSSIVICEKIV 655

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS--------------NEE 736
                 IL D   + Q  +N+ +NA     S G + +                     + 
Sbjct: 656 CEK--PILGDPVRIHQALMNLCTNAFQAMVSTGVLTVEVDMMDVFHSANGPIPNMVPGQY 713

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           + ++V DTG GM    L K   P+          GEGTGLGL L   +V+ + G   + S
Sbjct: 714 LTVKVMDTGNGMDPKTLNKIFDPYFTTKKP----GEGTGLGLALVYGVVEEHGGYVTVDS 769

Query: 797 TPAKGTLIEIIFPLYDT 813
            P +G+  ++ FP+ D 
Sbjct: 770 GPGQGSAFQLFFPVVDE 786


>gi|149375696|ref|ZP_01893465.1| two-component sensor histidine kinase protein, putative
           [Marinobacter algicola DG893]
 gi|149360098|gb|EDM48553.1| two-component sensor histidine kinase protein, putative
           [Marinobacter algicola DG893]
          Length = 1126

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 79/273 (28%), Positives = 141/273 (51%), Gaps = 7/273 (2%)

Query: 545 IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
           + +        L   +I   ++    L  AK+ AE  +  KS +L  +SHE+R+PL AI+
Sbjct: 633 VAEEESQRQTRLLTEEIVAHERTDQALQQAKEHAEAANGAKSRYLTGISHELRSPLNAIL 692

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           G++++++N    P       +    I RSG  + D++  LLDISKIE+G+++LH + V +
Sbjct: 693 GYAQLMENDTAIP---DNRKDALGVIRRSGEYLADLIEGLLDISKIEAGRLDLHRDEVRI 749

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG 723
           D  + + + + +L A EK +         +P  +  D + ++QI +N+LSNA+ +T +G 
Sbjct: 750 DLLMEQLVHMFRLQAEEKGLAFSYHGPTRLPELVTTDEKRLRQILINLLSNALKYTDNGS 809

Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
            I ++  + S       ++DTG G+    +E+  +PF +I    Q R  GTGLGL + + 
Sbjct: 810 -ISLTLKYRSQ-VAEFTIKDTGEGIAEENIERIFRPFERIRTPGQSRT-GTGLGLTITRL 866

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
           + +   G   + STP +G+   +   L     P
Sbjct: 867 LTEIMGGDLSVESTPGEGSTFRVSLMLSSLHTP 899


>gi|104782259|ref|YP_608757.1| sensor histidine kinase/response regulator [Pseudomonas entomophila
           L48]
 gi|95111246|emb|CAK15966.1| putative sensor histidine kinase/response regulator (hybrid)
           [Pseudomonas entomophila L48]
          Length = 1156

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 97/546 (17%), Positives = 201/546 (36%), Gaps = 62/546 (11%)

Query: 276 HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV 335
             +   Q   ++        + ++          +L    D         +       +V
Sbjct: 219 ENLQGQQRAAERLEHQAWLRAGQTQLAEQVLGQLTLPMLGDNILRFFATYLGSVVGAVYV 278

Query: 336 YSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS---DNNAIKPVMLYRSDR 391
               G L       L   +      +    GL             D+       L     
Sbjct: 279 RDEHGKLVRVACYGLDAEQQAREQVLGDHAGLLAQALRQGRLLRLDDLPEDYYRLSSGLG 338

Query: 392 TCIAASARLHTIQWNRENSLAM---TFIPFEKANQF--PENMPQNGIEPEDVDTRINKRK 446
           + +  S  L     + + +  +      P ++ +           GI  E    R   ++
Sbjct: 339 SGLPRSGVLMPAIDDGQTNGVLELGFLRPLQERDLEFLERIGGNLGISIESARYRQRLQE 398

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
           +  E  QL              N E  +        +      E++  +     + + + 
Sbjct: 399 VLAETQQL--------------NEELQVQ------QEELKTANEELEEQS---RVLKESQ 435

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQ 566
           + +     E+   + +       L                                E  Q
Sbjct: 436 AHLETQQAELEQTNEQLAERTEALDRKNN---------------------------ELNQ 468

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
            + +L       ++ S +KS+FLA +SHE+RTPL + +  ++++     G L +   +++
Sbjct: 469 AQVELQARADDLQRSSKYKSEFLANMSHELRTPLNSSLILAKLLSENAEGNLSDD-QVKF 527

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
           A  I  +GN +L+++ND+LDI+K+E+GK+ +  E  SL+        + Q  A +K +  
Sbjct: 528 AESIYSAGNDLLNLINDILDIAKVEAGKLEVRPESTSLERLAEGLQGMFQPLAQDKGLDF 587

Query: 687 RTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
                  +P  +  D + ++Q+  N+LSNAI FT  G ++ +  +H +   ++  VRDTG
Sbjct: 588 EVRLEAPLPPAVHTDRQRLEQVLKNLLSNAIKFTEHG-KVSLGISHQAGLGIVFAVRDTG 646

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+   + +     F Q+  +   +  GTGLGL +++ +     G+  + S+P +G++  
Sbjct: 647 IGIAADQQQAIFGAFHQVDGTSNRKYGGTGLGLSISRDLAHLLGGQISVDSSPGQGSVFS 706

Query: 806 IIFPLY 811
           +I P++
Sbjct: 707 LILPVH 712


>gi|51245777|ref|YP_065661.1| Ntr family two-component system sensory/regulatory protein
           [Desulfotalea psychrophila LSv54]
 gi|50876814|emb|CAG36654.1| related to two-component system sensory/regulatory protein (Ntr
           family) [Desulfotalea psychrophila LSv54]
          Length = 1018

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 78/512 (15%), Positives = 188/512 (36%), Gaps = 45/512 (8%)

Query: 321 LTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
           L+ E +++ P    +    GN+         +  Y   + +      +  L         
Sbjct: 388 LSDEILEQMPEAIVLTDLDGNIEKWLGRAEEIFGYSESECLGRVLAFNQPL--------E 439

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
                 +    +        +  ++ +   ++ +        ++    +    I  +  +
Sbjct: 440 LNITEQIEAGLKEKGRFLGEISCLRKDG-RAVPIEVTATRVFSRSGIVVGTISILQDITE 498

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTV 499
            R  K  + +  ++   ++  +     + ++   ++  N   ++LFGY +EDI  +    
Sbjct: 499 RRRAKEFLRVSEVRFRKMVAKSPMPTILTDQNQDLIFVNDKFTELFGYRLEDIDTEKKWW 558

Query: 500 FLEQNT---PSVMNHYLTEILSLDLRQTLEKITL---GSTKEEKLLSLRIIIKKLPFSSC 553
                      ++ +     +   +    +        +T++ ++      +  +   S 
Sbjct: 559 ESAYPDANYRKMVKNIWRIAIKRAVADDRDIEVQEWDLTTRDGRVSRCEFYMVPIEEQS- 617

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKES--SHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
             + ++DIS+  ++ ++ +  +   ++             ++H+    L  I+G++E+ K
Sbjct: 618 -LIVINDISQRIRDASEKNKLEMQLQQAQKMEAIGTLAGGIAHDFNNILAVILGYAELAK 676

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
           ++      N    +  + +   GN   ++V  +L  S+ E     +   P+ +   + EA
Sbjct: 677 DEV---PANSVIEKDLDQVIVGGNRAKELVKQILAFSRQE----KVERLPMKVQVLLKEA 729

Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS-GGQIIIST- 729
           + +++       I I+T        ILAD   V QI +N+ +NA H     GG++ I   
Sbjct: 730 MRMLRPSLPS-TIEIQTEIDPLCGFILADPTQVHQIIMNLCTNANHAMDKSGGRLHIELK 788

Query: 730 -----------THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
                      +  S + V+L V DTG G+    + K  +P+          G+GTG+GL
Sbjct: 789 RISIDEENEHSSLRSGDYVVLVVADTGKGIAPDNIGKIFEPYFTTK----EIGKGTGMGL 844

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
                ++    G+  + S P  G    + FP+
Sbjct: 845 ATIHGIIREYGGRIDVVSVPGHGAAFSVYFPV 876



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 36/308 (11%), Positives = 94/308 (30%), Gaps = 19/308 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            D  G +++      +  G    + +G  L   +  L ++    I   LK +  + G+ +
Sbjct: 403 TDLDGNIEKWLGRAEEIFGYSESECLGRVLA-FNQPLELNITEQIEAGLKEKGRFLGEIS 461

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
               +G    VPI++ A  ++SR+    G     I+         +   +  + +F  + 
Sbjct: 462 CLRKDGRA--VPIEVTATRVFSRSGIVVGT--ISILQDITERRRAKEFLRVSEVRFRKMV 517

Query: 209 EIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTE--YYAHKDDVLKTEKYPLLT 263
                 + +  +  D+             R+++  +            +  K  K     
Sbjct: 518 AKSPMPTILTDQNQDLIFVNDKFTELFGYRLEDIDTEKKWWESAYPDANYRKMVKNIWRI 577

Query: 264 SEESSLPEQEDFHTINLNQYTKKQYFGT-----LQNNSKESFEYLSHRNHPSLSAYFDEG 318
           + + ++ +  D      +  T+           +    +              ++  ++ 
Sbjct: 578 AIKRAVADDRDIEVQEWDLTTRDGRVSRCEFYMVPIEEQSLIVINDISQRIRDASEKNKL 637

Query: 319 ENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSV--DDIEIAGGLSTLLDAPKLS 376
           E    +   +        + G     N    ++  Y  +  D++     +   LD   + 
Sbjct: 638 EMQLQQA--QKMEAIGTLAGGIAHDFNNILAVILGYAELAKDEVPANSVIEKDLDQVIVG 695

Query: 377 DNNAIKPV 384
            N A + V
Sbjct: 696 GNRAKELV 703


>gi|16264910|ref|NP_437702.1| putative two-component sensor histidine kinase protein [Sinorhizobium
            meliloti 1021]
 gi|307312312|ref|ZP_07591947.1| multi-sensor signal transduction histidine kinase [Sinorhizobium
            meliloti BL225C]
 gi|15141049|emb|CAC49562.1| putative two-component sensor histidine kinase protein [Sinorhizobium
            meliloti 1021]
 gi|306899481|gb|EFN30112.1| multi-sensor signal transduction histidine kinase [Sinorhizobium
            meliloti BL225C]
          Length = 1229

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 85/747 (11%), Positives = 215/747 (28%), Gaps = 62/747 (8%)

Query: 97   EISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEGTN 156
            E+++ +       + + +G  +              I    + +  +  +T +  ++G+ 
Sbjct: 504  EVNQHVIDMFRANSREEMGGSITRYWQPALATIRRSIEARYRGEEVFQEETRVARMDGSV 563

Query: 157  LYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSS 216
            + V +   A P    ++   GF                   +  +++FS L  +   +  
Sbjct: 564  MDV-VFAIAQPGAIADKSLVGFI------DITERKRAEEALRAREREFSQLVNMVPSYLW 616

Query: 217  VEKEKY-------DIFSQQSPPPHLRMKNKVSSLTE----YYAHKDDVLKTEKYPLLTSE 265
                          +     P         V  L           D    +       + 
Sbjct: 617  RLTPDGVPNFLNQRLIDFLGPDVVNANVEGVHPLAAIIGAVVHPDDKTRMSNALFHSVAT 676

Query: 266  ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS----LSAYFDEGENL 321
                  +      +      +     +++      ++    +       +       +  
Sbjct: 677  GERFSMKYRLRRADGVYRWVEGSAEPMRDEEGRILQWYGLSHDIDDIMHVEEALRNSKQQ 736

Query: 322  TPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
              + ++  P     ++  G L Y +  +         +          L       D+  
Sbjct: 737  LEQMIEAVPFSTLSFAPTGELTYVSKRYQDQAGAPGAE----IKDFDALAREVAHPDDFP 792

Query: 381  IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
                   +   T      R    +    N   +              +       +  + 
Sbjct: 793  TMFARATQGFATGQPFVNRFRR-RLKDGNYRWIEARAQPLRRADGPIVQWYFASIDIEEE 851

Query: 441  RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR------ 494
               +  +      L  ++E     I      G  +  ++ +    GY +E++        
Sbjct: 852  MRAQEALRERERFLWQLVETLPAMIDCAAPNGEPVYRSQQLRDFLGYELEELDGGAKSRL 911

Query: 495  -KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553
                   +  +  + +       L         +       + +   +      +     
Sbjct: 912  DATLDAGVHPDDLAGVKEQYARSLESGEP--YRRKHRLRRFDGEYRWIETRAAPMRDEKG 969

Query: 554  YSL----TMHDISEWKQEKNKLSHAKKIAEKESSHKS--DFLARVSHEIRTPLTAIIGFS 607
              +       D+    + + +L  A++   +     S  +  A ++HE+  PL AI+  S
Sbjct: 970  AIVQWNVICLDVDREVRMQEELRLAQERLARAGQAASLAELSASIAHEVNQPLAAIVANS 1029

Query: 608  E-VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
                +     P+   R       + R      D+V+ +  + K    +   +   + L +
Sbjct: 1030 HACYRWLSADPVNIERAKITTERVIRDAKSAADVVSRIRALFK----QSVENRGILVLSD 1085

Query: 667  AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN---AIHFTPSGG 723
             +SEA SLV   A  +RI +      N+  +  D   V+Q+ +N++ N   A+       
Sbjct: 1086 VISEACSLVAAEALRRRIRLNIDVETNLAPVTVDRIQVQQVLVNLIRNGMEAMDAVDDNK 1145

Query: 724  QIIISTTHTSNEEVILRVRDTGVGMT-NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
             + +      + EV + + D G G+       +  +PF         +  G G+GL +++
Sbjct: 1146 TVDVRMHQVDD-EVRIEIGDNGNGVAFPE---RIFEPFFTT------KENGMGMGLAISR 1195

Query: 783  AMVDANMGKFYIFSTPAKGTLIEIIFP 809
            ++V+A+ G+ +      +G       P
Sbjct: 1196 SIVEAHGGRLWAEKNEPRGARFVFTLP 1222



 Score =  117 bits (294), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 48/550 (8%), Positives = 135/550 (24%), Gaps = 61/550 (11%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKM-------IGMRLCDVSDILHIDPNN-HIGDLLKR 139
            +   G     ++ L    G    ++       +   +  +      D     +   L  
Sbjct: 328 RLTPEGEPTFFNKRLTDFFGLDLQQLEKPNASRLVTAVQTLVHPDDADSLLQAVRRSLAT 387

Query: 140 QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199
              +  K  +   +G   Y  +D  A P+   +      + F I      +   +   K+
Sbjct: 388 GEPYSIKYRMRRADG--AYRWVDGRAEPLRDDSGTI--LQWFAISIDIDDEVRMQEALKQ 443

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQS--PPPHLRMKNKVSSLTEYYAHKDDVLKTE 257
            ++++  L        +       I   +       + ++  +    E+ +H  + L+ E
Sbjct: 444 SERRYRELFHYMPIGLAQIDAGKLIPMFKEMRAQGVVSLETYMDENPEFLSHALEALEVE 503

Query: 258 -------------------------KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTL 292
                                      P L +   S+  +     +   +    +  G++
Sbjct: 504 EVNQHVIDMFRANSREEMGGSITRYWQPALATIRRSIEARYRGEEVFQEETRVARMDGSV 563

Query: 293 QNNSKESFEYLSHRN-----------HPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNL 341
            +      +  +  +                      E    + V+  P   +  +   +
Sbjct: 564 MDVVFAIAQPGAIADKSLVGFIDITERKRAEEALRAREREFSQLVNMVPSYLWRLTPDGV 623

Query: 342 -FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK---PVMLYRSDRTCIAAS 397
             + N   +       V+           +    +  ++  +    +    +     +  
Sbjct: 624 PNFLNQRLIDFLGPDVVNANVEGVHPLAAIIGAVVHPDDKTRMSNALFHSVATGERFSMK 683

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
            RL   +        +        ++    +   G+  +  D    +  +     QL  +
Sbjct: 684 YRL---RRADGVYRWVEGSAEPMRDEEGRILQWYGLSHDIDDIMHVEEALRNSKQQLEQM 740

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP--FTVFLEQNTPSVMNHYLTE 515
           +EA           G +   ++      G P  +I             +    M    T+
Sbjct: 741 IEAVPFSTLSFAPTGELTYVSKRYQDQAGAPGAEIKDFDALAREVAHPDDFPTMFARATQ 800

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM--HDISEWKQEKNKLSH 573
             +                  + +  R    +              DI E  + +  L  
Sbjct: 801 GFATGQPFVNRFRRRLKDGNYRWIEARAQPLRRADGPIVQWYFASIDIEEEMRAQEALRE 860

Query: 574 AKKIAEKESS 583
            ++   +   
Sbjct: 861 RERFLWQLVE 870



 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 58/542 (10%), Positives = 138/542 (25%), Gaps = 51/542 (9%)

Query: 85   FTWNIDAHGYLKEISEELPKTIGNYA-----------FKMIGMRLCDVSDILHIDP-NNH 132
            + W +   G    +++ L   +G                +IG     V         +N 
Sbjct: 614  YLWRLTPDGVPNFLNQRLIDFLGPDVVNANVEGVHPLAAIIGA----VVHPDDKTRMSNA 669

Query: 133  IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDND 192
            +   +     +  K  L   +G  +Y  ++ +A P+          + +G+ H       
Sbjct: 670  LFHSVATGERFSMKYRLRRADG--VYRWVEGSAEPMRDEEGRI--LQWYGLSHDIDDIMH 725

Query: 193  PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDI------FSQQSPPPHLRMKNKVSSLTEY 246
                 +   ++   + E     +       ++      +  Q+  P   +K+  +   E 
Sbjct: 726  VEEALRNSKQQLEQMIEAVPFSTLSFAPTGELTYVSKRYQDQAGAPGAEIKDFDALAREV 785

Query: 247  YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
                D      +     +       +      + N    +     L+       ++    
Sbjct: 786  AHPDDFPTMFARATQGFATGQPFVNRFRRRLKDGNYRWIEARAQPLRRADGPIVQWYFAS 845

Query: 307  NHPSLSAYFDEGENLTPE----TVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVD-DI 360
                      E            V+  P        +G   Y +        Y+  + D 
Sbjct: 846  IDIEEEMRAQEALRERERFLWQLVETLPAMIDCAAPNGEPVYRSQQLRDFLGYELEELDG 905

Query: 361  EIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEK 420
                 L   LDA    D+ A       RS  +      R H ++        +       
Sbjct: 906  GAKSRLDATLDAGVHPDDLAGVKEQYARSLESGEPYR-RKHRLRRFDGEYRWIETRAAPM 964

Query: 421  ANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII------ 474
             ++    +  N I  +       + ++ +   +L    +A S      +    +      
Sbjct: 965  RDEKGAIVQWNVICLDVDREVRMQEELRLAQERLARAGQAASLAELSASIAHEVNQPLAA 1024

Query: 475  LSTNRAVS-KLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
            +  N     +       +I R   T              ++ I +L  +    +  L  +
Sbjct: 1025 IVANSHACYRWLSADPVNIERAKITTERVIRDAKSAADVVSRIRALFKQSVENRGILVLS 1084

Query: 534  KEEKLLSLRIIIKKLPFSSCYSLTMHDIS--------EWKQEKNKLSHAKKIAEKESSHK 585
                ++S    +              D+         +  Q +  L +  +   +     
Sbjct: 1085 D---VISEACSLVAAEALRRRIRLNIDVETNLAPVTVDRIQVQQVLVNLIRNGMEAMDAV 1141

Query: 586  SD 587
             D
Sbjct: 1142 DD 1143



 Score = 81.2 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 31/333 (9%), Positives = 84/333 (25%), Gaps = 39/333 (11%)

Query: 288 YFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANP 346
            F  L   +      L+  N     A   E E    + V+  P+    +   G   + N 
Sbjct: 281 AFSALIVAAISRQYQLALSNLQQSVATLRERERELSQIVNMVPVHIRRLTPEGEPTFFNK 340

Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
                         +             +  ++A   +   R         +  + ++  
Sbjct: 341 RLTDFFGLDLQQLEKPNASRLVTAVQTLVHPDDADSLLQAVRRSLATGEPYSIKYRMRRA 400

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
                 +        +     +    I  +  D    +  ++    +   +      G+A
Sbjct: 401 DGAYRWVDGRAEPLRDDSGTILQWFAISIDIDDEVRMQEALKQSERRYRELFHYMPIGLA 460

Query: 467 IINR----------------------------------EGIILSTNRAVSKLFGYPVEDI 492
            I+                                      +   N+ V  +F     + 
Sbjct: 461 QIDAGKLIPMFKEMRAQGVVSLETYMDENPEFLSHALEALEVEEVNQHVIDMFRANSREE 520

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS 552
           +    T + +    ++              +  ++ T  +  +  ++ +   I +    +
Sbjct: 521 MGGSITRYWQPALATIRRSIEARYRG---EEVFQEETRVARMDGSVMDVVFAIAQPGAIA 577

Query: 553 CYSLT-MHDISEWKQEKNKLSHAKKIAEKESSH 584
             SL    DI+E K+ +  L   ++   +  + 
Sbjct: 578 DKSLVGFIDITERKRAEEALRAREREFSQLVNM 610



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 15/188 (7%), Positives = 52/188 (27%), Gaps = 13/188 (6%)

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
               +  +   F+     +           +    + + +   +     +L  I+     
Sbjct: 265 TQRHKQFMLQLFLAISAFSALIVAAISRQYQLALSNLQQSVATLRERERELSQIVNMVPV 324

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKP-------FTVFLEQNTPSVMNHYLTEI 516
            I  +  EG     N+ ++  FG  ++ + +             +  +    +   +   
Sbjct: 325 HIRRLTPEGEPTFFNKRLTDFFGLDLQQLEKPNASRLVTAVQTLVHPDDADSLLQAVRRS 384

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLS 572
           L+     ++         +     +    + L   S     +     DI +  + +  L 
Sbjct: 385 LATGEPYSI--KYRMRRADGAYRWVDGRAEPLRDDSGTILQWFAISIDIDDEVRMQEALK 442

Query: 573 HAKKIAEK 580
            +++   +
Sbjct: 443 QSERRYRE 450


>gi|83815367|ref|YP_446672.1| sensor histidine kinase [Salinibacter ruber DSM 13855]
 gi|83756761|gb|ABC44874.1| sensor histidine kinase with a PAS domain [Salinibacter ruber DSM
           13855]
          Length = 720

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 103/599 (17%), Positives = 203/599 (33%), Gaps = 57/599 (9%)

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
              + LL +   + P +E    +  +          L       +      +  +     
Sbjct: 118 ATGFVLLGAGVWAAPARETSPLVLGSGMADV----ALFEAVAHWWGLSMRNSLKTQRDEL 173

Query: 316 DEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
               +   + +++ P+   V+       Y N   +      +V +  I            
Sbjct: 174 RRSRDQQRQMIEQLPMEMAVFDTEARFQYVNERAV---GDPAVREQLIGLTNEGYCRRHD 230

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
           L      +     R      + +    TI+ +      +        +         G  
Sbjct: 231 LDVALGRRRDESIREVVETKSINRLRETIETDEGPRHYLRIH-VPITDPDGTVRKVVGGG 289

Query: 435 PEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE---GIILSTNRAVSKLFGYP--- 488
            +  + +  +R +     ++ ++ EAT   +   ++E     I      + ++F YP   
Sbjct: 290 LDITERKERERDLRARQEKIEALYEATKQLLRAGSQEEVSDRIHWV---LKEVFDYPFAH 346

Query: 489 ----------VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
                      E                    + +           + +           
Sbjct: 347 TGFLEDGLIVPERTEAASGLSLPMPEARPPQENMVAGQALRSGEAVVSETIQSLADSIDY 406

Query: 539 LSLRIIIKKLPFSSCYSLTMH-DIS---------------------EWKQEKNKLSHAKK 576
             LR             +    D +                     +  + +  L  AK+
Sbjct: 407 GDLRSAASVPIGGHGAIVVGKADETTYRQFNLHLLELLGGYAALVLDRLRREAALRDAKE 466

Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF------GPLGNPRYIEYANYI 630
            AE+ S  KS  LA +SHEIRTPLT+IIGFSE I+ +                  +A+ I
Sbjct: 467 AAEEASRLKSTMLANMSHEIRTPLTSIIGFSETIEEEADLLEATPADANPSTLSRFAHLI 526

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
            ++G  +LD ++ +L++S++E+G+M+L  E + LDE     +  +   A E  +      
Sbjct: 527 GKNGRRLLDTLDGVLNLSRLEAGQMDLAAERIPLDELAKGLVDELHPQAEEAGVHCEVEK 586

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
                    D   ++    N++SNAI +T  GG++ +  ++ + +  ++ V DTG+GM  
Sbjct: 587 TPRPVVARVDRGGMQIALRNLISNAIKYTEEGGRVRVR-SYRAEDAAVVEVEDTGIGMDA 645

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             +E   +PF Q         EGTGLGL + K +++   G   + +    GT + +  P
Sbjct: 646 DTVEHVFEPFRQASEGLNREYEGTGLGLAVTKQVIEKMNGDIEVDTEEDAGTCVRLRLP 704



 Score = 61.2 bits (147), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 29/257 (11%), Positives = 61/257 (23%), Gaps = 13/257 (5%)

Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQW--N 406
                  +++       LS L           +    +             L    W   
Sbjct: 73  AWTVTLAALNQFSGEYSLSVLFVYALFGGIVILGADSMAPVLSFLATGFVLLGAGVWAAP 132

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
              +  +            E +            +  + ++     Q   ++E     +A
Sbjct: 133 ARETSPLVLGSGMADVALFEAVAHWWGLSMRNSLKTQRDELRRSRDQQRQMIEQLPMEMA 192

Query: 467 IINREGIILSTNRAV-------SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL 519
           + + E      N           +L G   E   R+     L+       +  + E++  
Sbjct: 193 VFDTEARFQYVNERAVGDPAVREQLIGLTNEGYCRRH---DLDVALGRRRDESIREVVET 249

Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIK-KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIA 578
                L +           L + + I               DI+E K+ +  L   ++  
Sbjct: 250 KSINRLRETIETDEGPRHYLRIHVPITDPDGTVRKVVGGGLDITERKERERDLRARQEKI 309

Query: 579 EKESSHKSDFLARVSHE 595
           E         L   S E
Sbjct: 310 EALYEATKQLLRAGSQE 326



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 42/372 (11%), Positives = 86/372 (23%), Gaps = 19/372 (5%)

Query: 90  DAHGYLKEISEEL-------PKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNT 142
           D     + ++E          + IG            DV+  L    +  I ++++ ++ 
Sbjct: 195 DTEARFQYVNERAVGDPAVREQLIGLTNEGYCRRHDLDVA--LGRRRDESIREVVETKSI 252

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
              + T+   EG   Y+ I +   PI   +       G G+        +     +   +
Sbjct: 253 NRLRETIETDEGPRHYLRIHV---PITDPDGTVRKVVGGGL--DITERKERERDLRARQE 307

Query: 203 KFSHLHEIKKGHSSV--EKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
           K   L+E  K       ++E  D                   L +     +         
Sbjct: 308 KIEALYEATKQLLRAGSQEEVSDRIHWVLKEVFDYPFAHTGFLEDGLIVPERTEAASGLS 367

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
           L   E     E         +             +S +  +  S  + P           
Sbjct: 368 LPMPEARPPQENMVAGQALRSGEAVVSETIQSLADSIDYGDLRSAASVPIGGHGAIVVGK 427

Query: 321 LTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSV-DDIEIAGGLSTLLDAPKLSDNN 379
               T  +  +       G               +   +  E A  L + + A     + 
Sbjct: 428 ADETTYRQFNLHLLELLGGYAALVLDRLRREAALRDAKEAAEEASRLKSTMLA--NMSHE 485

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
              P+         I   A L        N   ++             +           
Sbjct: 486 IRTPLTSIIGFSETIEEEADLLEATPADANPSTLSRFAHLIGKNGRRLLDTLDGVLNLSR 545

Query: 440 TRINKRKMEIEV 451
               +  +  E 
Sbjct: 546 LEAGQMDLAAER 557


>gi|325262857|ref|ZP_08129593.1| sensory box histidine kinase/response regulator [Clostridium sp.
           D5]
 gi|324031951|gb|EGB93230.1| sensory box histidine kinase/response regulator [Clostridium sp.
           D5]
          Length = 581

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 75/271 (27%), Positives = 135/271 (49%), Gaps = 8/271 (2%)

Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
           + + L    +    + + K+  A + AE  +  KS+FL+R+SHEIRTP+  I G + + K
Sbjct: 171 AGFLLLFIMLWVSGKHRKKVQMALETAEHANRAKSEFLSRMSHEIRTPMNGITGMTSIAK 230

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
                P    +  +  N I+ S   +L ++ND+LD+S+IESGK+ L   P +L E     
Sbjct: 231 KSLNDPG---KLQDCLNKIELSSGYLLSLLNDVLDMSRIESGKLELECRPFNLTEVFERI 287

Query: 672 ISLVQLYANEKRILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
             + +  A +  I +     +  +P ++ D   + Q+ +N++SNA+ FTP+GG++I+   
Sbjct: 288 YVMFKQKAEDAGISLEFQCGDIEVPSVIGDNLRITQVFVNLISNALKFTPAGGRVILEAH 347

Query: 731 HTS--NEEV--ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
            T   ++EV     V D+G+G+     ++   PF Q  +    +  GTGLGL +    V+
Sbjct: 348 ETEIKDQEVSLQFTVTDSGIGINEEFQKRIFIPFEQEQSGTARQYGGTGLGLAICSNFVE 407

Query: 787 ANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
              G+  ++S   +G+   +   L       
Sbjct: 408 LMGGQISVYSKTGEGSRFTVDITLQRPPAAQ 438


>gi|256959113|ref|ZP_05563284.1| hypothetical protein EFEG_00565 [Enterococcus faecalis DS5]
 gi|256949609|gb|EEU66241.1| hypothetical protein EFEG_00565 [Enterococcus faecalis DS5]
          Length = 583

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 71/363 (19%), Positives = 155/363 (42%), Gaps = 30/363 (8%)

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
            Q   +L+    G+ II+ +G +   N  + ++ G        K       +        
Sbjct: 246 EQFHELLDELMIGVFIIDTQGRLRLLNPKMQEMLGLSA-----KNMQSNYLEVIQDADLI 300

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY--SLTMHDISEWKQEKN 569
           +L   +  +     ++IT+        L L +       ++ Y      +D++  +Q + 
Sbjct: 301 HLIHQVVAEKNSLHQEITVTQGPTPLRLDLSLRYLDDQSANDYQVLGIAYDLTRVRQLE- 359

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
                          + DF++ VSHE++TP+T+++GF+E + +            ++ + 
Sbjct: 360 -------------KMQKDFVSNVSHELKTPVTSLLGFTETLIDG--AKEDPEVLNQFLHI 404

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           + +    +  ++ ++L++S+  S  +    + ++L++ ++E +   Q     K++    +
Sbjct: 405 MQKDAQRLQQLIQEILELSR-GSATIPYAEQEITLEKFITEILGSYQQQLAAKQLK---T 460

Query: 690 FANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747
             + +P             I  N++ NAI ++   GQI IS     N+++ L V+DTG+G
Sbjct: 461 VVHGLPESQFFTKYELFYPIVKNLIENAIQYSQENGQITISYAIE-NQQLRLSVQDTGIG 519

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           ++  + E+  + F ++  ++     GTGLGL + +   +   GK  I S    GT   I 
Sbjct: 520 ISQKDQERIFERFYRVDKARSRHSGGTGLGLAIVQNYTELLGGKIAIDSHLGLGTTFTIT 579

Query: 808 FPL 810
            PL
Sbjct: 580 LPL 582


>gi|171061038|ref|YP_001793387.1| histidine kinase [Leptothrix cholodnii SP-6]
 gi|170778483|gb|ACB36622.1| histidine kinase [Leptothrix cholodnii SP-6]
          Length = 589

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 75/256 (29%), Positives = 136/256 (53%), Gaps = 7/256 (2%)

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
           + + ++   +     L  ++  A+  +  K++FLA +SHE+RTPLT+I GF+E+++ +  
Sbjct: 336 IFLSNVRRLEASNVALIASEARAQSANHAKTEFLAAISHELRTPLTSIRGFAELMEKR-- 393

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
             +  P++ + A  I R+   +  ++  +LD +KIE+G M +   PV++   V       
Sbjct: 394 --IEQPKFKDQAGMIRRAAEHLNALLTQILDFAKIEAGAMRVGATPVAIRPLVRGTADFF 451

Query: 676 QLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
            + A EK + +R   A+++P  +L D   +KQ+  N+LSNA+ FT +GG + I       
Sbjct: 452 AVSAAEKGLELRVQIADDVPETLLTDELRLKQVLNNLLSNAMKFT-AGGHVAIEVE-RDA 509

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
            ++ L V DTG G+   + E   + F Q  +    +  GTGLGL L++++ +   G   +
Sbjct: 510 TQLRLHVVDTGPGIPAEQHELIFERFRQADSQVAHQHGGTGLGLALSRSLAELMGGTLGV 569

Query: 795 FSTPAKGTLIEIIFPL 810
            STP +G    +  PL
Sbjct: 570 TSTPGEGARFTLTLPL 585


>gi|117923614|ref|YP_864231.1| periplasmic sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117607370|gb|ABK42825.1| periplasmic sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 899

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 73/280 (26%), Positives = 148/280 (52%), Gaps = 11/280 (3%)

Query: 539 LSLRIIIKKLPFSSCYSLTMHDIS-EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIR 597
           + L + I     +  +   + + +    +   +L+ AK+ AE+ ++ KS FLA +SHEIR
Sbjct: 348 VELLVFILLRMGTGQFRREVLERTVALHKNNRQLALAKREAEEANAAKSRFLATMSHEIR 407

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
           TP+ AI+G ++++K+       +     +     R+G+ ++D++ND+LD+SK++SG++++
Sbjct: 408 TPMNAIVGMADLLKDTPL----DREQARFVATFQRAGDQLMDLLNDILDLSKVQSGQIHI 463

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAI 716
                 +   + +  +++   A  K++ +  +   N+P R+  D   ++Q+ +N+L NAI
Sbjct: 464 EVVETDIRTLLDDLSAMMVAKARVKQVDLLFNPHPNLPARVGVDPLRLRQVMINLLGNAI 523

Query: 717 HFTPSGGQIIISTTHTSNEEV----ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
            FT + G++ +    TS+ EV       + DTG+G+    L+   + F Q   S   +  
Sbjct: 524 KFT-ANGEVELRAYFTSSSEVPYGLGFEISDTGIGIDETRLKAIFEAFTQADLSVTRQFG 582

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
           GTGLGL +++ +V    G   + ST  +G+      P+ +
Sbjct: 583 GTGLGLTISRHLVALMGGDIQVESTIGQGSRFWFEIPIDE 622


>gi|308270677|emb|CBX27288.1| hypothetical protein N47_I07080 [uncultured Desulfobacterium sp.]
          Length = 699

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 92/489 (18%), Positives = 167/489 (34%), Gaps = 48/489 (9%)

Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
           +          +  I  G    +  P   D       M    D    A    + +I    
Sbjct: 91  YTATYTGPKDQEFAIKIGADRFILKPCEPD-----VFMEAIRDVMTTAMDHHITSITTPE 145

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL--CSILEATSDGI 465
                +    + +            +E E    R  ++ +     +L     L    D  
Sbjct: 146 HEEEMLKL--YSERLVRKLETKMLELEKEVQARREAEKALRESEARLIEAQRLARMGD-- 201

Query: 466 AIINREGIILSTNRAVSKLFGYPVED--ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
            I + E    + + A+  L GY   D     K        +    +N +L   ++     
Sbjct: 202 FIWDVETGKTTWSDALFDLLGYDKSDTIDYDKVHEKIHHPDDLERVNQWLDRCITSGQDI 261

Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAE 579
                     K+ ++  +R  +  +            T+ DI+E K+ +      ++   
Sbjct: 262 LSPNEYRIVRKDGEIFFVR-TVGNIRRRPGKKPEIFATVQDITEHKRAEEDQKSLEEQLR 320

Query: 580 KES--SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
           +             ++H+    LT IIG +E++      P  NP   E    I  +G   
Sbjct: 321 QSQKLEAVGLLSGGIAHDFNNLLTTIIGNAELVLMSI--PKDNP-LRENIEGIKAAGERS 377

Query: 638 LDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRI 697
             +   LL  S+    K  L    ++L+E       ++      + I ++T    ++ +I
Sbjct: 378 ATLTRHLLSFSR----KQVLQPTVINLNEIALNMEKMLCRMI-GEDIEMKTILDPDLGQI 432

Query: 698 LADLRSVKQIALNILSNAIHFTPSGGQIIISTT--------------HTSNEEVILRVRD 743
            AD   ++Q+ +N++ NA    P GG+I I T                     V+L V D
Sbjct: 433 EADSGQIEQVIMNLVVNARDAMPDGGKITIETANVDLDEDYTRSHIAVAPGPYVMLSVSD 492

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TG GM+     +  +PF         +G+GTGLGL     +V  + G  +++S P KGT 
Sbjct: 493 TGTGMSREVQSQIFEPFFTT------KGKGTGLGLSTVYGIVKQSKGNIWVYSEPGKGTT 546

Query: 804 IEIIFPLYD 812
            +I  P  +
Sbjct: 547 FKIYLPRVE 555


>gi|240142880|ref|YP_002967393.1| putative Sensory/regulatory protein rpfC [Methylobacterium
           extorquens AM1]
 gi|240012827|gb|ACS44052.1| putative Sensory/regulatory protein rpfC [Methylobacterium
           extorquens AM1]
          Length = 679

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 75/254 (29%), Positives = 126/254 (49%), Gaps = 6/254 (2%)

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           +    KL  AK  AE  S  KS F+A VSHE+RTPL AIIG S+++   R     +    
Sbjct: 165 RSLLVKLQKAKADAEAASLAKSRFMASVSHELRTPLNAIIGMSDLLGETRL----DADQT 220

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           E    +  +G  +L  +N +LD S++E G+M     P +L +AV++A S+V   A  K +
Sbjct: 221 EMNRTVSTAGRALLAHINTILDFSRLEVGRMPAEKAPFALRDAVADAASMVVAQARSKGL 280

Query: 685 LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
             +T   +++P+ +    R ++++ +N+ +NA+ FT  G  + +       + V   VRD
Sbjct: 281 AFQTEVDDDLPQGVCGGRRHLEEVLVNLAANAVKFTADG-TVSVHVRRADGDMVRFEVRD 339

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TG+G+      +  + F Q   +      GTGLGL + + +V  + G+  + S    G+ 
Sbjct: 340 TGIGIAPEARGRIFEAFSQADETILDSFGGTGLGLAICRQLVTLHGGEIGVDSEIGVGST 399

Query: 804 IEIIFPLYDTSHPH 817
                PL +   P 
Sbjct: 400 FWFELPLPEAPLPQ 413


>gi|186473035|ref|YP_001860377.1| multi-sensor hybrid histidine kinase [Burkholderia phymatum STM815]
 gi|184195367|gb|ACC73331.1| multi-sensor hybrid histidine kinase [Burkholderia phymatum STM815]
          Length = 1165

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 117/672 (17%), Positives = 230/672 (34%), Gaps = 56/672 (8%)

Query: 178 FRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK 237
            RGF I          +    R + +   L E+   + S   +   I + Q        +
Sbjct: 72  LRGFLITGDEAFLAPYQLGQPRFETEIGSLIEMVSDNPSQADQLKRIRAVQQRWDQFAQQ 131

Query: 238 NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN--- 294
                               K     +             +   + +  +    L     
Sbjct: 132 MIDLRRRNLDYTDSVKSGRGKIEFDETRRLFAQFVTVEEALRQQRSSDTRSVTALLVGAF 191

Query: 295 -----NSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY---ANP 346
                +      +   R+  +LS  +D       E  +      ++ S   L        
Sbjct: 192 LLVSLSISGVIAWRGRRDLLNLSEAYDGVLGRQAEHAEVLQQQVWLRSGQRLLAEKMVGQ 251

Query: 347 SFLLLTKYKSVDDIEI--AGGLSTLLDAPKL--------------SDNNAIKPVMLYRSD 390
           S   L     ++ +       ++ L    +                  +A +      S 
Sbjct: 252 SSPPLVGRAILEFLAQYLDVVVAALYVRDRATSSLKRIATYGFSEESEHAARSFRDADSL 311

Query: 391 RTCIAASARLHTIQ--WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
               A S R+  +    +    +          N     +  +G+    V+    +    
Sbjct: 312 VGQAAVSRRMLVLHDVPDDYVKVVSGTGMSPPRNLVVLPIDNDGVVNGVVEMGFMRNIAP 371

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAV--SKLFGYPVEDILRKPFTVFLEQNTP 506
            +   L  +  +  D I              A    +     + +  +    + ++Q   
Sbjct: 372 RDHEFLQLVANSMGDFI-------------EAALYRERLQDALSETQQLNEELQVQQEEL 418

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQ 566
            V N  L E     +          +  E+  + L    K+L              E   
Sbjct: 419 RVSNEGLEERGRALVESQARLEAQQAELEQTNVQLEDYAKRLERQKA---------ELLS 469

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
            + +L+      E+ S +KS+FLA +SHE+RTPL + +  + +++  R G L + +   Y
Sbjct: 470 AQGELAANAARLEQSSRYKSEFLANMSHELRTPLNSSLILARLLQENRTGNLTDEQVR-Y 528

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
           A  I  S + +L ++ND+LD+SK+E+G++ +  E V+++  +     + +  A  K +  
Sbjct: 529 AETIHASNSDLLVLINDILDLSKVEAGQITIDRELVAVESMLQSLREMFEPMAAAKHLQF 588

Query: 687 RTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
               A  +P  I  D + + QI  N+LSNA+ FT  G ++ ++   +  + +   VRDTG
Sbjct: 589 SVERAPGVPDMIFTDGQRITQILRNLLSNALKFTERG-EVALTVAASDADTLRFDVRDTG 647

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G+   +LE   + F Q   S      G+GLGL +++       G+  + S P KG++  
Sbjct: 648 IGIAADKLELIFEAFQQADGSTSRNYGGSGLGLSISREFARLLGGRVSVASEPGKGSVFT 707

Query: 806 IIFPLYDTSHPH 817
           +  PL  +   H
Sbjct: 708 LWLPLQGSVEAH 719


>gi|332306528|ref|YP_004434379.1| PAS/PAC sensor signal transduction histidine kinase [Glaciecola
           agarilytica 4H-3-7+YE-5]
 gi|332173857|gb|AEE23111.1| PAS/PAC sensor signal transduction histidine kinase [Glaciecola
           agarilytica 4H-3-7+YE-5]
          Length = 398

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 75/385 (19%), Positives = 158/385 (41%), Gaps = 32/385 (8%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ 503
            +       QL ++L+A  D + II+ +G I   N A  ++FGY VE++L K   + +  
Sbjct: 11  AQSAIDANAQLNALLDAAVDAMIIIDHKGGIELFNAAAQRMFGYSVEEVLGKNVKILMPA 70

Query: 504 NTPSVMNHYLTEILSLDLRQT--LEKITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMH 559
                 + YL   +  +  +   + +      K  K+  + + + ++  SS   +   + 
Sbjct: 71  PYQEEHDKYLDNYMKTNHAKIIGIGREVRACKKNGKVFPIELSVGEVKDSSHKQFVGIIR 130

Query: 560 DISEWKQEKNKLSHAKKIAEKESSH--KSDFLARVSHEIRTPLTAIIGFSE---VIKNQR 614
           DISE  + ++    +++     +      +  A ++HEI  PL+A+  +++    +  + 
Sbjct: 131 DISEQVKARSDAIASREKLAHVTRLSTMGEMAAGIAHEINQPLSAVSSYAQACKNMLERS 190

Query: 615 FGP----LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
            G     L   +       I        +++  L    K  + + +     V  +  + E
Sbjct: 191 SGEGLHSLQQQKLTSALEKISHQALRAGEVIRRLRAFVKKRNSERDY----VDFNALIEE 246

Query: 671 AISL--VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ--II 726
            I L  V     +  I +  + +   P ++ D   ++Q+  N++ NAI          ++
Sbjct: 247 TIDLAKVDTRLLDHGIEVTLNSSPA-PFLMIDQIQIQQVLFNLIRNAIDAMEEQPTDPVV 305

Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
           I T   + + + + V DTG G++    E+   PF     S      G G+GLP+ ++++ 
Sbjct: 306 IDTRWLNEQYLEISVIDTGYGISAQNAERLFHPFFTTKPS------GMGMGLPICQSIIQ 359

Query: 787 ANMGKFYIFSTPA--KGTLIEIIFP 809
           ++ G      TP   KG++     P
Sbjct: 360 SHGGVL--KHTPGKPKGSIFSFTLP 382



 Score = 45.8 bits (107), Expect = 0.035,   Method: Composition-based stats.
 Identities = 27/291 (9%), Positives = 78/291 (26%), Gaps = 14/291 (4%)

Query: 58  NQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMR 117
                S+       N  +   +   V     ID  G ++  +    +  G    +++G  
Sbjct: 4   PINQPSSAQSAIDANAQLNALLDAAVDAMIIIDHKGGIELFNAAAQRMFGYSVEEVLGKN 63

Query: 118 LCDVSDILHIDPNNH----IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNR 173
           +  +    + + ++            +    G+      +      PI+L+   +   + 
Sbjct: 64  VKILMPAPYQEEHDKYLDNYMKTNHAKIIGIGREVRACKKN-GKVFPIELSVGEVKDSSH 122

Query: 174 EFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPH 233
           +    +  GI+         R+      +K +H+  +    +  E           P   
Sbjct: 123 K----QFVGIIRDISEQVKARSDAIASREKLAHVTRLS---TMGEMAAGIAHEINQPLSA 175

Query: 234 LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293
           +    +        +  + +   ++  L ++ E      +      + +  +        
Sbjct: 176 VSSYAQACKNMLERSSGEGLHSLQQQKLTSALEKI--SHQALRAGEVIRRLRAFVKKRNS 233

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYA 344
                 F  L               ++    T++  P PF +     +   
Sbjct: 234 ERDYVDFNALIEETIDLAKVDTRLLDHGIEVTLNSSPAPFLMIDQIQIQQV 284


>gi|319783623|ref|YP_004143099.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
 gi|317169511|gb|ADV13049.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 506

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 99/253 (39%), Positives = 156/253 (61%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I+E +  K+    A++ AE  +  KS FLA +SHE+RTPL AI+GFSEV+ N+  GP+ N
Sbjct: 237 IAELETAKSMSDEARRRAEDANLAKSRFLASMSHELRTPLNAILGFSEVMSNEVLGPMSN 296

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
           P Y +YA+ +  SG  +LD++N++LD+S+IE+G+  L+ EPV L   V +   +++L A 
Sbjct: 297 PTYRDYAHDVHESGQHLLDLINEILDLSRIEAGRYQLNEEPVMLLGIVEDCCHMMELRAR 356

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
            K I +   F + +PR+ AD R+V+QI LN+LSNAI FT +GG+I +    T+     + 
Sbjct: 357 NKDIRVVQDFEHELPRLFADERAVRQITLNLLSNAIKFTATGGEIRVRVGWTAGGGQYIS 416

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           ++D G G+   E+   +  FGQ   + +   +GTGLGLP+ + ++  + G+F + S   +
Sbjct: 417 IKDNGPGIPEDEIPIVLSAFGQGSIAIKSAEQGTGLGLPIVQGLLAMHGGEFELHSKLRE 476

Query: 801 GTLIEIIFPLYDT 813
           GT    IFPL   
Sbjct: 477 GTEAIAIFPLSRV 489


>gi|315923456|ref|ZP_07919696.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|313697331|gb|EFS34166.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
          Length = 419

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 85/384 (22%), Positives = 163/384 (42%), Gaps = 34/384 (8%)

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTN---------------RAVSKLFGYPVEDI 492
           E E+ +L  +L+  +    +I+++ ++  TN               + V  L        
Sbjct: 34  ENELKKLALVLQNINAYFLLIDKDFVVCDTNYYSLNRLPIQVGGVTKRVGDLLHCRNAIA 93

Query: 493 ---LRKPFTVFLEQNTPSVMNHYLTEI----LSLDLRQTLEKITLGSTKEEKLLSLRIII 545
                +     L     S+   +  +     L   ++   E  T  +  +   +S+    
Sbjct: 94  AGECGQHEQCKLCCIRASIGKAFYKKASFKNLEASMKLLSEDETKVTPCD---VSVSGTY 150

Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
             +       LT++D++E K  +  LS  ++ +      KS F+A +SHE+RTPL AI+G
Sbjct: 151 LNIHGEDYMVLTVYDVTELKNAQRLLSIEREHSISADKLKSAFIANMSHEVRTPLNAIVG 210

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
           FS ++               YA+ I  +   +L +VND+ D+S+IESG ++  +     +
Sbjct: 211 FSGLM----VSASSEEERKMYADVIAENNERLLRLVNDIFDLSQIESGTVDFVYTEFDAN 266

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725
           + + E   + +   N   + +          + ++   + Q+  N+L NA+ FT SG +I
Sbjct: 267 DLLRELEGIFKTKLNNSSVELVCEAHIQPIMMYSERERIIQVLSNLLHNAMKFTESG-EI 325

Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
            +  +    EEV   V DTG+G+   E +K    F ++        +GTGLGL L++ ++
Sbjct: 326 RLGCSLKGTEEVCFVVSDTGIGIPKEEQKKIFSRFIKLD----REMQGTGLGLTLSQTII 381

Query: 786 DANMGKFYIFSTPAKGTLIEIIFP 809
               G   + S   +G+    + P
Sbjct: 382 QNLGGNLELDSEINRGSTFSFVLP 405


>gi|299147530|ref|ZP_07040594.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
 gi|298514317|gb|EFI38202.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
          Length = 422

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 85/384 (22%), Positives = 163/384 (42%), Gaps = 34/384 (8%)

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTN---------------RAVSKLFGYPVEDI 492
           E E+ +L  +L+  +    +I+++ ++  TN               + V  L        
Sbjct: 37  ENELKKLALVLQNINAYFLLIDKDFVVCDTNYYSLNRFPIQVGGVTKRVGDLLHCRNAIA 96

Query: 493 ---LRKPFTVFLEQNTPSVMNHYLTEI----LSLDLRQTLEKITLGSTKEEKLLSLRIII 545
                +     L     S+   +  +     L   ++   E  T  +  +   +S+    
Sbjct: 97  AGECGQHEQCKLCCIRASIGKAFYKKASFKNLEASMKLLSEDETKVTPCD---VSVSGTY 153

Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
             +       LT++D++E K  +  LS  ++ +      KS F+A +SHE+RTPL AI+G
Sbjct: 154 LNIHGEDYMVLTVYDVTELKNAQRLLSIEREHSISADKLKSAFIANMSHEVRTPLNAIVG 213

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
           FS ++               YA+ I  +   +L +VND+ D+S+IESG ++  +     +
Sbjct: 214 FSGLM----VSASSEEERKMYADVIAENNERLLRLVNDIFDLSQIESGTVDFVYTEFDAN 269

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725
           + + E   + +   N   + +          + ++   + Q+  N+L NA+ FT SG +I
Sbjct: 270 DLLRELEGIFKTKLNNSSVELVCEAHIQPIMMYSERERIIQVLSNLLHNAMKFTESG-EI 328

Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
            +  +    EEV   V DTG+G+   E +K    F ++        +GTGLGL L++ ++
Sbjct: 329 RLGCSLKGTEEVCFVVSDTGIGIPKEEQKKIFSRFIKLD----REMQGTGLGLTLSQTII 384

Query: 786 DANMGKFYIFSTPAKGTLIEIIFP 809
               G   + S   +G+    + P
Sbjct: 385 QNLGGNLELDSEINRGSTFSFVLP 408


>gi|293373400|ref|ZP_06619755.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
 gi|292631538|gb|EFF50161.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
          Length = 422

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 85/384 (22%), Positives = 163/384 (42%), Gaps = 34/384 (8%)

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTN---------------RAVSKLFGYPVEDI 492
           E E+ +L  +L+  +    +I+++ ++  TN               + V  L        
Sbjct: 37  ENELKKLALVLQNINAYFLLIDKDFVVCDTNYYSLNRLPIQVGGVTKRVGDLLHCRNAIA 96

Query: 493 ---LRKPFTVFLEQNTPSVMNHYLTEI----LSLDLRQTLEKITLGSTKEEKLLSLRIII 545
                +     L     S+   +  +     L   ++   E  T  +  +   +S+    
Sbjct: 97  AGECGQHEQCKLCCIRASIGKAFYKKASFKNLEASMKLLSEDETKVTPCD---VSVSGTY 153

Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
             +       LT++D++E K  +  LS  ++ +      KS F+A +SHE+RTPL AI+G
Sbjct: 154 LNIHGEDYMVLTVYDVTELKNAQRLLSIEREHSISADKLKSAFIANMSHEVRTPLNAIVG 213

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
           FS ++               YA+ I  +   +L +VND+ D+S+IESG ++  +     +
Sbjct: 214 FSGLM----VSASSEEERKMYADVIAENNERLLRLVNDIFDLSQIESGTVDFVYTEFDAN 269

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725
           + + E   + +   N   + +          + ++   + Q+  N+L NA+ FT SG +I
Sbjct: 270 DLLRELEGIFKTKLNNSSVELVCEAHIQPIMMYSERERIIQVLSNLLHNAMKFTESG-EI 328

Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
            +  +    EEV   V DTG+G+   E +K    F ++        +GTGLGL L++ ++
Sbjct: 329 RLGCSLKGTEEVCFVVSDTGIGIPKEEQKKIFSRFIKLD----REMQGTGLGLTLSQTII 384

Query: 786 DANMGKFYIFSTPAKGTLIEIIFP 809
               G   + S   +G+    + P
Sbjct: 385 QNLGGNLELDSEINRGSTFSFVLP 408


>gi|256031617|ref|ZP_05445231.1| PAS domain-containing protein [Brucella pinnipedialis M292/94/1]
          Length = 898

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 99/626 (15%), Positives = 209/626 (33%), Gaps = 51/626 (8%)

Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271
           +G      + Y   +  +    +R  ++V +     +     L       L+++E     
Sbjct: 145 RGQIVYANQAYARMTGATDADGIRPLDQVLASEPAASDAIYRLTNAVRDGLSAQEEVRIS 204

Query: 272 QEDFHTINLNQY--TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE-----NLTPE 324
                  N +      +     L+  ++     ++ +         ++            
Sbjct: 205 GGLSRGANGSLAPVWYRIKARALEGGAEFKGPLVAWQVADISEERAEQERFFQELQEAIN 264

Query: 325 TVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
            +D  P  FF     G + Y N +               +  L+ ++    ++       
Sbjct: 265 HLDHAPAGFFSANPAGRIIYLNATLAEWLGVDLTQFTPGSLTLNDIVAGSGMA------L 318

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
           +   +++      +     +      SLA+ F    +  +         I  +  +   +
Sbjct: 319 IKAVKAEPGTSRNTVIDLDLIKRNGQSLAVRFYHRVQTARDGMPGTTRTIVLDRAEGDDS 378

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG--YPVEDILRKPFTVFL 501
                   ++      +    IA ++ EG  L TN     +F      + I R+     +
Sbjct: 379 SVAQRSAEVRFTRFFNSAPMAIAAVDAEGHTLRTNARFLDIFSGVVDRDAIDRRVKLENV 438

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII----IKKLPFSSCYSLT 557
                    +                 T+    EE+ +   +     +          ++
Sbjct: 439 VHERDRETFNKALAAAFAGQASISPVDTVLPGNEERHIRFYMSSVTDLGGEAAEEAAVIS 498

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
             + +E K  +N+++ ++K+              ++H+    LTAII  S+++       
Sbjct: 499 AVETTEQKALENQMAQSQKM-----QAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNH--R 551

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
             +P + +  N I ++ N    +V  LL  S+    +  L  E + L + +++ + ++  
Sbjct: 552 ASDPSFPDIMN-IKQNANRAASLVRQLLAFSR----RQTLRPEVLDLTDVLAD-LRMLLA 605

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT------- 730
               K I ++     ++  + ADL   +Q+A+N+  NA    P GGQI + T        
Sbjct: 606 RLVGKDIELKIDHGRDLWPVKADLGQFEQVAVNLAVNARDAMPEGGQITLRTRNIPAADA 665

Query: 731 -------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
                      + V+  V DTG G+    LEK  +PF          G+GTGLGL +   
Sbjct: 666 AKLHYRDLPEADYVVFEVEDTGTGIPADVLEKIFEPFFTTK----EVGKGTGLGLSMVYG 721

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFP 809
           ++    G  Y  S   KGT  +I  P
Sbjct: 722 IIKQTGGFIYCDSEVGKGTTFKIFLP 747



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/238 (11%), Positives = 66/238 (27%), Gaps = 7/238 (2%)

Query: 319 ENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
           ++L    +D  P    +    G + YAN ++  +T     D I     +  L   P  SD
Sbjct: 125 QDLAHSFMDTQPEGTVISDPRGQIVYANQAYARMTGATDADGIRPLDQV--LASEPAASD 182

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
                   +                 +    +   + +    +A +         +  + 
Sbjct: 183 AIYRLTNAVRDGLSAQEEVRISGGLSRGANGSLAPVWYRIKARALEGGAEFKGPLVAWQV 242

Query: 438 VDTRINKRKMEIEVMQLC-SI--LEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILR 494
            D    + + E    +L  +I  L+    G    N  G I+  N  +++  G  +     
Sbjct: 243 ADISEERAEQERFFQELQEAINHLDHAPAGFFSANPAGRIIYLNATLAEWLGVDLTQFTP 302

Query: 495 KPFT-VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
              T   +   +   +   +           ++   +    +   +     ++     
Sbjct: 303 GSLTLNDIVAGSGMALIKAVKAEPGTSRNTVIDLDLIKRNGQSLAVRFYHRVQTARDG 360



 Score = 60.4 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 46/420 (10%), Positives = 102/420 (24%), Gaps = 38/420 (9%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD--ILHIDPNNHIGDLLKRQNTWYGKT 147
           D  G +   ++   +  G      I   L  V        D    + + ++   +   + 
Sbjct: 143 DPRGQIVYANQAYARMTGATDADGI-RPLDQVLASEPAASDAIYRLTNAVRDGLSAQEEV 201

Query: 148 TL-----WPIEGTNLYVPIDLAALPIYSRNREFSG-FRGFGIVHVNRVDNDPRALGKRLD 201
            +         G+   V   + A  +     EF G    + +  ++    +     + L 
Sbjct: 202 RISGGLSRGANGSLAPVWYRIKARALEGGA-EFKGPLVAWQVADISEERAEQERFFQELQ 260

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR------MKNKVSSLTEYYAHKDDVLK 255
           +  +HL     G  S       I+   +    L           ++           ++K
Sbjct: 261 EAINHLDHAPAGFFSANPAGRIIYLNATLAEWLGVDLTQFTPGSLTLNDIVAGSGMALIK 320

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN--NSKESFEYLSHRNHPSLSA 313
             K    TS  + +                     T ++          L        S 
Sbjct: 321 AVKAEPGTSRNTVIDLDLIKRNGQSLAVRFYHRVQTARDGMPGTTRTIVLDRAEGDDSSV 380

Query: 314 YFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLT-KYKSVDDIEIAGGLSTLLD 371
                E       +  P+    V + G+    N  FL +       D I+    L  +  
Sbjct: 381 AQRSAEVRFTRFFNSAPMAIAAVDAEGHTLRTNARFLDIFSGVVDRDAIDRRVKLENV-V 439

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
             +  +         +    +       L     N E  +                    
Sbjct: 440 HERDRETFNKALAAAFAGQASISPVDTVL---PGNEERHIRFYMSSVTDLGGEAAEEAAV 496

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSI----------LEATSDGIAIINREGIILSTNRAV 481
               E  + +  + +M  +  ++ ++                 I + +    +L TN   
Sbjct: 497 ISAVETTEQKALENQM-AQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSD---LLLTNHRA 552



 Score = 48.5 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 45/134 (33%), Gaps = 12/134 (8%)

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY-LT 514
           S ++   +G  I +  G I+  N+A +++ G    D   +P    L     +    Y LT
Sbjct: 130 SFMDTQPEGTVISDPRGQIVYANQAYARMTGATDAD-GIRPLDQVLASEPAASDAIYRLT 188

Query: 515 EILSLDLRQTLEKITLG---STKEEKLLSLRIIIKKLPFSSC-------YSLTMHDISEW 564
             +   L    E    G         L  +   IK               +  + DISE 
Sbjct: 189 NAVRDGLSAQEEVRISGGLSRGANGSLAPVWYRIKARALEGGAEFKGPLVAWQVADISEE 248

Query: 565 KQEKNKLSHAKKIA 578
           + E+ +     + A
Sbjct: 249 RAEQERFFQELQEA 262


>gi|238761954|ref|ZP_04622927.1| Sensor kinase protein rcsC [Yersinia kristensenii ATCC 33638]
 gi|238699682|gb|EEP92426.1| Sensor kinase protein rcsC [Yersinia kristensenii ATCC 33638]
          Length = 932

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 93/370 (25%), Positives = 160/370 (43%), Gaps = 29/370 (7%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
             ++E        I+ +   GI+I+   +G  + +N                  +   L 
Sbjct: 328 ALRLEEHEQFNRKIVASAPVGISILRISDGTNILSNELA-------------HNYINLLT 374

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
                 +   + E  +  +           T     L +  +  +    +     + D+S
Sbjct: 375 NEDRERITRIICEQQANFVDVM--------TSNNNNLQISFVHSRYRNENVAICVLVDVS 426

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
              + +  L      AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R
Sbjct: 427 SRVKMEESLQEMAAAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPHGVER 485

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                  ++ S  L+L I++D+LD SKIES ++ +     S  E ++   +       +K
Sbjct: 486 ---LVTAMNNSSGLLLKIISDILDFSKIESEQLKIEPIEFSTVEVITHITANYLPLVVKK 542

Query: 683 RILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
           R+ +      N+PR++  D   ++Q+  N+L+NAI FT +G  II+         +  RV
Sbjct: 543 RLGLYCFIEPNVPRMMVGDAVRLQQVISNLLNNAIKFTDTG-CIILQVRVR-GYYLEFRV 600

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
           RDTGVG+ + E+ +   PF Q+    Q   +GTGLGL + + +++   G   + S    G
Sbjct: 601 RDTGVGINSREINQLFDPFFQVGTGVQRHFQGTGLGLAICEKLINLMDGDVEVVSELGMG 660

Query: 802 TLIEIIFPLY 811
           ++  I  PLY
Sbjct: 661 SIFAIRIPLY 670


>gi|190572627|ref|YP_001970472.1| putative sensor histidine kinase/response regulator fusion protein
           [Stenotrophomonas maltophilia K279a]
 gi|190010549|emb|CAQ44158.1| putative sensor histidine kinase/response regulator fusion protein
           [Stenotrophomonas maltophilia K279a]
          Length = 659

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 89/536 (16%), Positives = 177/536 (33%), Gaps = 65/536 (12%)

Query: 294 NNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFV----YSHGN-----LFYA 344
              +     L                +L    +++    F V    +             
Sbjct: 5   RPVQTPLSTLPPLVERPPMMVPAPEPDLHHGVLERINAGFCVIQVLFEGDRAVDYRFIEV 64

Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
           N +F   T  K          +S L       + +  +                    + 
Sbjct: 65  NDAFERHTGLKDA----RGQRMSAL---EPNHEEDWFRIYGEVARSGRPAQFEMEARALG 117

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDG 464
                    +F         P       +  +    +  + ++     +  ++ +     
Sbjct: 118 R--------SFAVDAVRVGRPGEDKVGILFFDITARKQMEVELGESEARFSALADGLPMP 169

Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
           + +++  G     N A S+ FG     +    +   +  +  SV  + L E L    +++
Sbjct: 170 VWVLDERGHARFVNSAFSEFFGGDETRVPEDVWRGLVHPDDASVFEYELQEALK--AQRS 227

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH----DISEWKQEK---NKLSHAKKI 577
           +  +      + +   L +  +         + +     D++E ++ +    +L  +++ 
Sbjct: 228 MHALVRARRADGQWRWLEMNARPRFSRMGRFIGLAGSSPDVTERREIELAREELLQSERA 287

Query: 578 AEKES----SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
           A   +      K +FLA +SHE+RTPLT I+G+SE++  +           +  N I  S
Sbjct: 288 ARSAAENMARLKDEFLATLSHELRTPLTTILGWSELLLQRVDNTSP---LYKGLNVIANS 344

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693
                 +++D+LD+S +  GK+ L  E + L   + EAI   +L A  K + +       
Sbjct: 345 AGAQKRLISDMLDLSSMLLGKVQLEVEVLDLRTLLGEAIGAQELVAEGKALDVNLQLPEQ 404

Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753
              +L D   ++Q+  N+LSNAI FTP+ G+I +          ++ VRDTG G+    L
Sbjct: 405 PSLVLGDATRLQQVFWNLLSNAIKFTPAEGRIDVQLQ-ADGTHWVITVRDTGDGIAPEFL 463

Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
                 F Q   +   R                           P  G    +  P
Sbjct: 464 NHLFSRFRQADGTTTRRQR------------------------RPGHGATFTVRLP 495



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 42/415 (10%), Positives = 96/415 (23%), Gaps = 19/415 (4%)

Query: 54  FTDQNQESVSNTNYLDSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKM 113
           F D            +SE  F        +   W +D  G+ + ++    +  G    ++
Sbjct: 139 FFDITARKQMEVELGESEARFSALADGLPMP-VWVLDERGHARFVNSAFSEFFGGDETRV 197

Query: 114 IGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRN 172
                  +            + + LK Q + +        +G   +  +++ A P +SR 
Sbjct: 198 PEDVWRGLVHPDDASVFEYELQEALKAQRSMHALVRARRADG--QWRWLEMNARPRFSRM 255

Query: 173 REFSGFRGFG-IVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPP 231
             F G  G    V   R     R    + ++      E                 +    
Sbjct: 256 GRFIGLAGSSPDVTERREIELAREELLQSERAARSAAENMARLKDEFLATLSHELRTPLT 315

Query: 232 PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY--F 289
             L     +    +  +     L          +       +    +      + +    
Sbjct: 316 TILGWSELLLQRVDNTSPLYKGLNVIANSAGAQKRLISDMLDLSSMLLGKVQLEVEVLDL 375

Query: 290 GTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS---------HGN 340
            TL   +  + E ++      ++    E  +L      +    F+             G 
Sbjct: 376 RTLLGEAIGAQELVAEGKALDVNLQLPEQPSLVLGDATRLQQVFWNLLSNAIKFTPAEGR 435

Query: 341 LFYANPSFLLLTKYKSVD--DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398
           +     +          D  D      L+ L    + +D    +                
Sbjct: 436 IDVQLQADGTHWVITVRDTGDGIAPEFLNHLFSRFRQADGTTTRRQR-RPGHGATFTVRL 494

Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
             H     R     +   P  +         +        D       +   + +
Sbjct: 495 PQHLPDAERRPLREVISGPILEPVIVEPYPLRGMHVLAVEDQPEVLEYLRRMLEE 549



 Score = 60.0 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/266 (9%), Positives = 65/266 (24%), Gaps = 21/266 (7%)

Query: 201 DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP 260
              F     +      V          +          + +   +++    +V ++ +  
Sbjct: 48  QVLFEGDRAVDYRFIEVNDAFERHTGLKDARGQRMSALEPNHEEDWFRIYGEVARSGRPA 107

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
               E  +L        + + +              K    +        +     E E 
Sbjct: 108 QFEMEARALGRSFAVDAVRVGRP----------GEDKVGILFFDITARKQMEVELGESEA 157

Query: 321 LTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNN 379
                 D  P+P +V    G+  + N +F                    +       D+ 
Sbjct: 158 RFSALADGLPMPVWVLDERGHARFVNSAFSEFFGGD------ETRVPEDVWRGLVHPDDA 211

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
           ++    L  + +   +  A L   +        +      + ++    +   G  P+  +
Sbjct: 212 SVFEYELQEALKAQRSMHA-LVRARRADGQWRWLEMNARPRFSRMGRFIGLAGSSPDVTE 270

Query: 440 TRI---NKRKMEIEVMQLCSILEATS 462
            R     + ++        S  E  +
Sbjct: 271 RREIELAREELLQSERAARSAAENMA 296



 Score = 48.9 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/236 (8%), Positives = 49/236 (20%), Gaps = 21/236 (8%)

Query: 94  YLKEISEELPKTIGNYAFKMIGMRLCDVSD-ILHIDPNNHIGDLLKRQNTWYGKTTLWPI 152
              E+++   +  G    +   M   + +           +           G+   + +
Sbjct: 60  RFIEVNDAFERHTGLKDARGQRMSALEPNHEEDWFRIYGEVAR--------SGRPAQFEM 111

Query: 153 EGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212
           E   L     + A+ +     +  G   F                   + +FS L +   
Sbjct: 112 EARALGRSFAVDAVRVGRPGEDKVGILFF----DITARKQMEVELGESEARFSALADGLP 167

Query: 213 GHSSVEKEKYDIFSQQSPPP------HLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
               V  E+       S           R+   V     +    D  +   +       +
Sbjct: 168 MPVWVLDERGHARFVNSAFSEFFGGDETRVPEDVWRGLVH--PDDASVFEYELQEALKAQ 225

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
            S+         +      +       +               +     +      
Sbjct: 226 RSMHALVRARRADGQWRWLEMNARPRFSRMGRFIGLAGSSPDVTERREIELAREEL 281


>gi|160937188|ref|ZP_02084550.1| hypothetical protein CLOBOL_02078 [Clostridium bolteae ATCC BAA-613]
 gi|158439752|gb|EDP17501.1| hypothetical protein CLOBOL_02078 [Clostridium bolteae ATCC BAA-613]
          Length = 1236

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 121/761 (15%), Positives = 236/761 (31%), Gaps = 56/761 (7%)

Query: 88   NIDAHGYLK--EISEELPKTIGNYAFKM---IGMRLCDVSDILHIDPNNHIGDLLKRQNT 142
             I+  G       S+      G    ++    G           ++  N           
Sbjct: 334  RIEKDGRKTPEYFSDGYAMLSGMSMDQVWKSYGEDGMAAVHPDDVEQLNAELSDFMASGE 393

Query: 143  WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
               + T     G   Y+ I      +     E   +  +       V+   +   +R  +
Sbjct: 394  EQREFTYRIKRGDGEYIWIKNMTSMLRRGEGEVILYASY---RDLTVEFKEQEQIRRQYR 450

Query: 203  KFSHLHEIKKGHSSV-------------EKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAH 249
            +    H    G +++             E   Y            R        T     
Sbjct: 451  ELILQHYRTPGPNALIVGHCNITRSQITEISDYTDSGLLECFGTERDAFFTGISTLILDE 510

Query: 250  KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
            K+      ++    +  +    + +       +  K      ++       E  +     
Sbjct: 511  KERRDYMNRFLNEPTRAAFQAGKRELELDCFIRLPKDVRGRYVKFKVNLVEEPDTGDITG 570

Query: 310  SLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
             L+ Y    + +    + K     +        + +   +L  ++   D    +G  S  
Sbjct: 571  ILTVYDITEQTIAERNLKKLSTSGYDLIADVDLFHDFCTILSGRFTKDDLCAKSGRHSER 630

Query: 370  LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR-----ENSLAMTFIPFEKANQF 424
            L               + +                ++        +  +       +   
Sbjct: 631  LAYMMERQLVPKDRPRIMKMLEPEYILERLKQEDPYSLSYSILGEAGEIQTKKLTVSATD 690

Query: 425  PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
                       +  D+   ++ +   V       E    GI  +    I L T++AV ++
Sbjct: 691  LRLGRVCLARADITDSVREQQGLLNVVAY---TFEML--GIIHLGSRHITLYTHQAVLQV 745

Query: 485  FGYPVEDILRKPFTVFLEQNTPSVMNHYLTE--------ILSLDLRQTLEKITLGSTKEE 536
               P    +        ++  P      +              +     + +     + +
Sbjct: 746  LE-PRRASIDSWLADIKKKYAPKGGEEEVERCFGLQNMLARLEERPGGYDFVLPYLEENQ 804

Query: 537  KLLSLRIIIKKLPFSSCYSLTMHDISE----WKQEKNKLSHAKKIAEKESSHKSDFLARV 592
                   I+          +   D++E     ++ K  L  A  +AE+ +  KSDFL+ +
Sbjct: 805  IRYKQINILWGDGDHKMICIVRQDVTETMTAERRSKETLEQALALAEEANRAKSDFLSSM 864

Query: 593  SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
            SH+IRTP+ AI+G +  +           +       I  S   +L ++ND+LD+SKIE 
Sbjct: 865  SHDIRTPMNAIMGMT-TLARAHLDE--REKVENCLRKITLSSRHLLSLINDILDMSKIEQ 921

Query: 653  GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNI 711
             K+ L+ + V L + + +  S++   A E  +      +N I P    D   + QI +NI
Sbjct: 922  SKITLNNDKVFLSDLLEQLYSIIGQQAQEAGLQFDVRTSNIIHPYFYGDALRINQILINI 981

Query: 712  LSNAIHFTPSGGQIIISTT----HTSNEEVI--LRVRDTGVGMTNYELEKAMKPFGQIPN 765
            L NA+ FTP GG +   T           V     +RDTG+GM    L    +PF +  N
Sbjct: 982  LGNAVKFTPDGGTVTFLTEELPTIKGPGYVRYCFTIRDTGIGMPESFLSHLFEPFTR--N 1039

Query: 766  SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
                  EG+GLGL + K +++   G+  + S    GT   +
Sbjct: 1040 RNTEHVEGSGLGLSITKGLIELMGGELLVESRERAGTTFRV 1080



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/250 (10%), Positives = 83/250 (33%), Gaps = 18/250 (7%)

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII----NREGIILSTNRAVSKL 484
                  +  +    +++ E       +++     G+A++    +        +   + L
Sbjct: 294 AYLKYVRDVTEEVKAQKEKEHIEQYFQTLVRKLPGGVAVVRIEKDGRKTPEYFSDGYAML 353

Query: 485 FGYPVEDIL---RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
            G  ++ +     +     +  +    +N  L++ ++    Q  E        + + + +
Sbjct: 354 SGMSMDQVWKSYGEDGMAAVHPDDVEQLNAELSDFMASGEEQR-EFTYRIKRGDGEYIWI 412

Query: 542 RIIIKKLPFSSCYS---LTMHDIS-EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE-- 595
           + +   L           +  D++ E+K+++      +++  +           V H   
Sbjct: 413 KNMTSMLRRGEGEVILYASYRDLTVEFKEQEQIRRQYRELILQHYRTPGPNALIVGHCNI 472

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL---DISKIES 652
            R+ +T I  +++    + FG   +  +   +  I        D +N  L     +  ++
Sbjct: 473 TRSQITEISDYTDSGLLECFGTERDAFFTGISTLILDEKER-RDYMNRFLNEPTRAAFQA 531

Query: 653 GKMNLHFEPV 662
           GK  L  +  
Sbjct: 532 GKRELELDCF 541



 Score = 43.1 bits (100), Expect = 0.22,   Method: Composition-based stats.
 Identities = 26/280 (9%), Positives = 72/280 (25%), Gaps = 31/280 (11%)

Query: 311 LSAYFDEGENLTPETVDKCPIPFFVYSHGN----LFYANPSFLLLTKYKSV--DDIEIAG 364
           L     +        V+  P     Y          + +   L L+ +     +++    
Sbjct: 69  LETELKDTRMKMEHLVNSIPGGIVSYEIQGKKAVPDFVSDGLLALSGHTRSGYNELVKGN 128

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
            +  +       + +  + +   RS             I+    + + +         + 
Sbjct: 129 TIDIIY------EADRGRVLSAARSAVESGRVMDISCRIRHKDGHLVWIHISGRRIGPKA 182

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSK 483
                         D  +             SI   T++ + +I++E   ++ T+ +   
Sbjct: 183 DTMRFYAVFTGMSEDAIL-----------FRSIANDTAERVYVIDKESYELIYTSESAG- 230

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
            F     D + +     L           L           ++       +  +  S R 
Sbjct: 231 -FLCQGADCIGQKCYAALYGKNQPCEFCTLKSHKPDGAAHGMDY-----HENGRFYSTRF 284

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
                     Y   + D++E  + + +  H ++  +    
Sbjct: 285 RETLWNGIPAYLKYVRDVTEEVKAQKEKEHIEQYFQTLVR 324


>gi|160882174|ref|ZP_02063177.1| hypothetical protein BACOVA_00117 [Bacteroides ovatus ATCC 8483]
 gi|260175224|ref|ZP_05761636.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|156112429|gb|EDO14174.1| hypothetical protein BACOVA_00117 [Bacteroides ovatus ATCC 8483]
          Length = 422

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 85/384 (22%), Positives = 163/384 (42%), Gaps = 34/384 (8%)

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTN---------------RAVSKLFGYPVEDI 492
           E E+ +L  +L+  +    +I+++ ++  TN               + V  L        
Sbjct: 37  ENELKKLALVLQNINAYFLLIDKDFVVCDTNYYSLNRLPIQVGGVTKRVGDLLHCRNAIA 96

Query: 493 ---LRKPFTVFLEQNTPSVMNHYLTEI----LSLDLRQTLEKITLGSTKEEKLLSLRIII 545
                +     L     S+   +  +     L   ++   E  T  +  +   +S+    
Sbjct: 97  AGECGQHEQCKLCCIRASIGKAFYKKASFKNLEASMKLLSEDETKVTPCD---VSVSGTY 153

Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
             +       LT++D++E K  +  LS  ++ +      KS F+A +SHE+RTPL AI+G
Sbjct: 154 LNIHGEDYMVLTVYDVTELKNAQRLLSIEREHSISADKLKSAFIANMSHEVRTPLNAIVG 213

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
           FS ++               YA+ I  +   +L +VND+ D+S+IESG ++  +     +
Sbjct: 214 FSGLM----VSASSEEERKMYADVIAENNERLLRLVNDIFDLSQIESGTVDFVYTEFDAN 269

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725
           + + E   + +   N   + +          + ++   + Q+  N+L NA+ FT SG +I
Sbjct: 270 DLLRELEGIFKTKLNNSSVELVCEAHIQPIMMYSERERIIQVLSNLLHNAMKFTESG-EI 328

Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
            +  +    EEV   V DTG+G+   E +K    F ++        +GTGLGL L++ ++
Sbjct: 329 RLGCSLKGTEEVCFVVSDTGIGIPKEEQKKIFSRFIKLD----REMQGTGLGLTLSQTII 384

Query: 786 DANMGKFYIFSTPAKGTLIEIIFP 809
               G   + S   +G+    + P
Sbjct: 385 QNLGGNLELDSEINRGSTFSFVLP 408


>gi|68299595|dbj|BAE02741.1| two-component regulatory system sensor kinase GacS [Pseudomonas
           fluorescens]
          Length = 917

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 79/243 (32%), Positives = 142/243 (58%), Gaps = 8/243 (3%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           +L  A+K A + S  KS+FLA +SHEIRTPL  I+GF+ +++     P    R ++Y   
Sbjct: 270 ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSEMSP----RQLDYLGT 325

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           I++S + +L I+N++LD SKIE+GK+ L   P +L + + + ++++   A+ K++ + + 
Sbjct: 326 IEKSADNLLGIINEILDFSKIEAGKLVLDSVPFNLRDLLQDTLTILAPAAHAKQLELVSL 385

Query: 690 FANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQI---IISTTHTSNEEVILRVRDTG 745
              + P  ++ D   +KQI  N++SNAI FT  G  +   +I      + ++ + V+DTG
Sbjct: 386 VYRDTPLALVGDPLRLKQILTNLVSNAIKFTREGTIVARAMIEDEQEDSVQLRISVQDTG 445

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           +G++N ++    + F Q  NS   +  GTGLGL ++K +++   G+  + STP +G+   
Sbjct: 446 IGLSNQDVRALFQAFSQADNSLSRQPVGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFW 505

Query: 806 IIF 808
           I  
Sbjct: 506 ISL 508


>gi|302035922|ref|YP_003796244.1| hypothetical protein NIDE0543 [Candidatus Nitrospira defluvii]
 gi|300603986|emb|CBK40318.1| protein of unknown function, putative Histidine kinase [Candidatus
           Nitrospira defluvii]
          Length = 771

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 73/266 (27%), Positives = 127/266 (47%), Gaps = 6/266 (2%)

Query: 555 SLTMHDISEWKQEKN--KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
             T+ D  E + ++   +L    +  ++    +S F++  SHE+RTP+T+I GF E + +
Sbjct: 508 LATLTDHLERRVQERTHELQTVNERLQEHDQRRSKFVSVASHELRTPMTSIKGFVENMLD 567

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
              G L   R   Y   +  + + +  I+N LLD S+++ G++ +  EP+ +DE V + +
Sbjct: 568 GLTGQLS-ERQEHYLQRVKHNVDRLTRIINQLLDWSRLDVGRIEIKPEPLHIDEFVRDVV 626

Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
              Q  A EK I++          + AD   ++QI  N++ NAI FTP  G + +S +  
Sbjct: 627 ESFQTLAAEKSIVLDVLPCEQPITVRADRDKLEQILWNLVGNAIKFTPPSGHVSVSCSIC 686

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
                 + V DTG G+   EL      F ++ ++     +G  LGL + K++V  + G+ 
Sbjct: 687 DARYAQITVADTGCGIAPDELPHVFNEFSKVESAM-PSSQGAQLGLFITKSLVALHGGQM 745

Query: 793 YIFSTPAKGTLIEIIFPL--YDTSHP 816
            + S    GT      PL     S P
Sbjct: 746 CVDSRLGVGTQFYFTLPLDNAPASTP 771


>gi|302659494|ref|XP_003021437.1| sensor histidine kinase/response regulator, putative [Trichophyton
           verrucosum HKI 0517]
 gi|291185335|gb|EFE40819.1| sensor histidine kinase/response regulator, putative [Trichophyton
           verrucosum HKI 0517]
          Length = 1318

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 74/265 (27%), Positives = 130/265 (49%), Gaps = 22/265 (8%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           +S  +    + + A++ AE  +  KS+FLA +SHEIRTP+  IIG +++  +        
Sbjct: 705 VSSLRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDD---LK 761

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
           P   E  N +    N +L I++D+LDISKIE+ +M +   P ++   V  A+  + + AN
Sbjct: 762 PYPREMLNVVHSLANSLLTIIDDILDISKIEANRMVIESIPFTMRGTVFNALKTLAVKAN 821

Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTT--------- 730
           EK + +     +++P  ++ D   ++QI LN++ NAI FT  G ++ +            
Sbjct: 822 EKFLNLTYQVDSSVPDYVIGDPFRLRQIILNLVGNAIKFTEHG-EVTLEIKKHVPPPPAE 880

Query: 731 -------HTSNEEV-ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
                     +E      V+DTG+G+   +L+     F Q   S   +  GTGLGL ++K
Sbjct: 881 GEPEREVCADDEYAYEFSVQDTGIGIAKDKLDMIFDTFQQADGSTTRKFGGTGLGLSISK 940

Query: 783 AMVDANMGKFYIFSTPAKGTLIEII 807
            +V+   G  ++ S   +G+     
Sbjct: 941 RLVNLMGGDVWVTSEYGRGSTFHFT 965


>gi|293610389|ref|ZP_06692690.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827621|gb|EFF85985.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 935

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 78/243 (32%), Positives = 127/243 (52%), Gaps = 14/243 (5%)

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
           +  A   +  KS FLA +SHE+RTPL +I GF  ++  Q+     N     Y   I +S 
Sbjct: 280 RDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQN---LNNEQNLYLQTIRKSS 336

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
             +L ++ND+LD SKI++GK+ L   P  L+EAV + + ++   A +K I +   +A+NI
Sbjct: 337 AHLLALINDVLDFSKIDAGKLELETAPFDLEEAVFDVMDMLSPLAAQKHIAMAFYYADNI 396

Query: 695 PR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDTGVGMT 749
           P+ ++ D    KQI  N++SNAI FTP G +II+      ++     +   V+D+G+G++
Sbjct: 397 PQQVIGDALRFKQILTNLISNAIKFTPDG-EIIVRVRMEHDDIGQCLLHFSVQDSGIGLS 455

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP-----AKGTLI 804
             + +K  + F Q   S   +  GTGLGL ++K +V    G+             KG+  
Sbjct: 456 GTDRKKLFESFSQGDASVTRQFGGTGLGLAISKQLVHLMHGQIGFEDNQERAPTEKGSTF 515

Query: 805 EII 807
              
Sbjct: 516 WFT 518


>gi|83643657|ref|YP_432092.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83631700|gb|ABC27667.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 442

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 79/402 (19%), Positives = 152/402 (37%), Gaps = 29/402 (7%)

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
              L    +     ++       +GI    V    ++ +++  + ++     A  D + +
Sbjct: 52  HRWLYQAKMEDPPESRGLWGDLFDGIHRLQVQHYRSRDRLQAMIDRIQESTNALKDAVVM 111

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
            N EG +   N++  KL G+       +     +                     +  ++
Sbjct: 112 TNSEGAMDWWNQSAEKLLGFKYPTDRGQLIYNLIRTPIFKRYFA----------SKKYQE 161

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
             + +      L L+  I          L   D++   + +                + D
Sbjct: 162 PLILNAPNNPNLKLQFHITLFGEDDRLLLV-QDVTRLYRLEE--------------MRRD 206

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           F++ VSHE+RTPLT I G+ E + +        PR+    N + +    +  +VNDLL +
Sbjct: 207 FVSNVSHELRTPLTVISGYLETLIDNAD--ELPPRWNRAMNQMQQQAQRMEALVNDLLLL 264

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707
           S+IE+   N     V +D  +       +  + EK   I  S  +    +  +   +   
Sbjct: 265 SRIENDGSNFKATLVDVDSMLRAICDDARALSQEKGHRIELSLESAAG-LTGNETQLHSA 323

Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
             NI+ NA+ +TP  G+I +       + V   VRD+G+G+    + +  + F +   S+
Sbjct: 324 FSNIVMNAVKYTPPNGEIRVRW-FEDKKGVHFAVRDSGIGIDPLHIPRLTERFYRADPSR 382

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
                GTGLGL + K ++  + G+  I S    G+     FP
Sbjct: 383 AADTGGTGLGLAIVKHVLINHDGELEITSHIGAGSTFTCHFP 424


>gi|54307731|ref|YP_128751.1| sensory box sensor histidine kinase/response regulator
           [Photobacterium profundum SS9]
 gi|46912154|emb|CAG18949.1| hypothetical sensory box sensor histidine kinase/response regulator
           [Photobacterium profundum SS9]
          Length = 1131

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 81/314 (25%), Positives = 143/314 (45%), Gaps = 5/314 (1%)

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL-PFSSCYS 555
            +     N+ +     LT          LE+   G+ + +++  L I   ++        
Sbjct: 370 ISSHWLSNSITAPLLRLTWAAERASAGDLEQEIKGTERSDEIGRLAISFARMQRSIREKI 429

Query: 556 LTMHDIS-EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
             + D + E +Q    +S   +  +     K +FLA  SHE+RTPL  ++G +E +    
Sbjct: 430 TLIRDQNNELEQNLKVISQQNENLQAADKLKDEFLATTSHELRTPLHGMVGIAESLLAGA 489

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
            GP+   +  +    I  SG  + ++V+DLLD  K+  G ++++   V+L  AV   + L
Sbjct: 490 NGPVQKSQRRQ-LEMIINSGQRLTNLVDDLLDYHKMRYGDLDINKHAVNLPSAVRLVLEL 548

Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
                  K + I     N++P +LAD + ++QI  N++ NAI +T  G  I+ ST     
Sbjct: 549 SSHLLGSKPVRIINQIPNDLPLVLADEQRLEQILYNLVGNAIKYTSEGKIILSSTVLE-- 606

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
            ++ ++V DTG G+   +LE   +P  Q         +G GLGL +++ ++D   G  Y+
Sbjct: 607 NQIRIQVVDTGQGIPAEQLEHIFEPLIQANTGLANYRQGAGLGLSISRQLIDLMGGHLYV 666

Query: 795 FSTPAKGTLIEIIF 808
            S P  GT      
Sbjct: 667 SSQPMVGTTFSFTL 680



 Score = 52.7 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 46/135 (34%), Gaps = 5/135 (3%)

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490
             ++ E       +  +     +L  +LE+T++ I  +  EG I   N A  KLF    E
Sbjct: 853 AALQQEIHRREQVEVGLLTTQSRLLGLLESTNEAILCVQNEGRIRYANSAAGKLFKRSPE 912

Query: 491 DILRKPFTVFLEQN-----TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
            + R      L  +     + S   +           + LE   +   +E  L  + +  
Sbjct: 913 QLERYNIEDILVTHLPNDISQSHHFNGNLTFRIGGELKPLETDVINLPEESGLKRMFVFD 972

Query: 546 KKLPFSSCYSLTMHD 560
            + P +      + D
Sbjct: 973 NEGPSAQHRISMLED 987


>gi|37676294|ref|NP_936690.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
 gi|37200835|dbj|BAC96660.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
          Length = 984

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 81/264 (30%), Positives = 128/264 (48%), Gaps = 13/264 (4%)

Query: 561 ISEWKQEKNKLSHAKKI--AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
           ++  K     L+HAK    AE+ +  KS FLA +SHEIRTP+  ++G + ++ +    PL
Sbjct: 459 LTNEKLNHEVLNHAKARSLAEQANRAKSAFLATMSHEIRTPMNGVLGTARLLMDSGLNPL 518

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
                  YA+ I+RSG  +L I+ND+LD SKIE+G + +      L + V +   L+Q  
Sbjct: 519 ----QKRYADIINRSGKNLLAILNDVLDYSKIEAGHLEIRESAFELHQMVEDTFQLMQSR 574

Query: 679 ANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEE 736
           A EK +       +++      D+  + Q+  N++ NAI FT  G   I +S        
Sbjct: 575 AAEKSLTFSYHIESDVNHYWRGDVTRISQVLNNLVGNAIKFTHQGAVDIYVSLDLEQENV 634

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           V   V DTG+G+   E       F Q  +  Q    GTGLGL +++ ++ A  G+  + S
Sbjct: 635 VQFEVTDTGIGIAQQEQATLFDAFTQA-SGGQKAAGGTGLGLAISRRIIQAMGGQMEMAS 693

Query: 797 TPAKGTLIEIIFPLYDTSHPHDCI 820
              +G+      PL     P D +
Sbjct: 694 EEGEGSRFWFTVPL----TPCDAV 713


>gi|329571903|gb|EGG53581.1| PAS domain S-box protein [Enterococcus faecalis TX1467]
          Length = 591

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 71/363 (19%), Positives = 155/363 (42%), Gaps = 30/363 (8%)

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
            Q   +L+    G+ II+ +G +   N  + ++ G        K       +        
Sbjct: 250 EQFHELLDELMIGVFIIDTQGRLRLLNPKMQEMLGLSA-----KNMQSNYLEVIQDADLI 304

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY--SLTMHDISEWKQEKN 569
           +L   +  +     ++IT+        L L +       ++ Y      +D++  +Q + 
Sbjct: 305 HLIHQVVAEKNSLHQEITVTQGPTPLRLDLSLRYLDDQSANDYQVLGIAYDLTRVRQLE- 363

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
                          + DF++ VSHE++TP+T+++GF+E + +            ++ + 
Sbjct: 364 -------------KMQKDFVSNVSHELKTPVTSLLGFTETLIDG--AKEDPEVLNQFLHI 408

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           + +    +  ++ ++L++S+  S  +    + ++L++ ++E +   Q     K++    +
Sbjct: 409 MQKDAQRLQQLIQEILELSR-GSATIPYAEQEITLEKFITEILGSYQQQLAAKQLK---T 464

Query: 690 FANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747
             + +P             I  N++ NAI ++   GQI IS     N+++ L V+DTG+G
Sbjct: 465 VVHGLPESQFFTKYELFYPIVKNLIENAIQYSQENGQITISYAIE-NQQLRLSVQDTGIG 523

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           ++  + E+  + F ++  ++     GTGLGL + +   +   GK  I S    GT   I 
Sbjct: 524 ISQKDQERIFERFYRVDKARSRHSGGTGLGLAIVQNYTELLGGKIAIDSHLGLGTTFTIT 583

Query: 808 FPL 810
            PL
Sbjct: 584 LPL 586


>gi|325124545|gb|ADY84068.1| GacS-like sensor kinase protein [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 935

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 78/243 (32%), Positives = 127/243 (52%), Gaps = 14/243 (5%)

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
           +  A   +  KS FLA +SHE+RTPL +I GF  ++  Q+     N     Y   I +S 
Sbjct: 280 RDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQN---LNNEQNLYLQTIRKSS 336

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
             +L ++ND+LD SKI++GK+ L   P  L+EAV + + ++   A +K I +   +A+NI
Sbjct: 337 AHLLALINDVLDFSKIDAGKLELETAPFDLEEAVFDVMDMLSPLAAQKHIAMAFYYADNI 396

Query: 695 PR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDTGVGMT 749
           P+ ++ D    KQI  N++SNAI FTP G +II+      ++     +   V+D+G+G++
Sbjct: 397 PQQVIGDALRFKQILTNLISNAIKFTPDG-EIIVRVRMEHDDIGQCLLHFSVQDSGIGLS 455

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP-----AKGTLI 804
             + +K  + F Q   S   +  GTGLGL ++K +V    G+             KG+  
Sbjct: 456 GTDRKKLFESFSQGDASVTRQFGGTGLGLAISKQLVHLMHGQIGFEDNQERAPTEKGSTF 515

Query: 805 EII 807
              
Sbjct: 516 WFT 518


>gi|311740983|ref|ZP_07714808.1| sensor histidine kinase [Corynebacterium pseudogenitalium ATCC
           33035]
 gi|311303785|gb|EFQ79863.1| sensor histidine kinase [Corynebacterium pseudogenitalium ATCC
           33035]
          Length = 420

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 79/412 (19%), Positives = 171/412 (41%), Gaps = 40/412 (9%)

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV-----MQLCSILEATSDGIAI 467
           +              +P        +         E          L   ++ +   +A+
Sbjct: 3   LILSFAAGVVACGLALPVISWLRGRIARYRQATDAEANQVTTVSQVLHLAVQGSPTALAV 62

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
           ++R   I+ +N A  ++             ++  ++     +     E+      +T++ 
Sbjct: 63  LDRNQEIVMSNPAAHEM-------------SLVHDRAVNPEVWQTAQEVFEDKETRTVDL 109

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM--HDISEWKQEKNKLSHAKKIAEKESSHK 585
                    ++   + +IK L  +    + +   D SE  + +              S +
Sbjct: 110 AIPKRRTGHRVTQFKAVIKPLTLNDGRFVIIYGTDESENVRME--------------SAR 155

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA-NYIDRSGNLVLDIVNDL 644
            DF+A VSHE++TP+  I   +E +        G+   +EY  N + +  N + D+V++L
Sbjct: 156 RDFVANVSHELKTPVGGIALLAEALLQDP----GDQETVEYFGNKVYKEANRMADMVSEL 211

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704
           + +SK++  +     EP+++D+ + EA+S  QL A  + I +    +  + ++  D   +
Sbjct: 212 ISLSKLQGAEALPEMEPLAVDDLIEEALSRNQLAAEARSIELNRGASAGV-QVKGDRSLL 270

Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764
                N++SNAI+++P    + +S        V++RV D G+G+   + ++  + F ++ 
Sbjct: 271 VTALSNLVSNAINYSPEKMPVSVSQKVVDGGVVLIRVTDRGIGIAPDDQKRVFERFFRVD 330

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
            ++  +  GTGLGL + K +V  + G   ++S P  G+   I  P+Y    P
Sbjct: 331 QARSRQTGGTGLGLAIVKHVVANHGGNIKLWSRPGTGSTFTIELPIYREEKP 382


>gi|225868205|ref|YP_002744153.1| alkaline phosphatase synthesis sensor protein [Streptococcus equi
           subsp. zooepidemicus]
 gi|225701481|emb|CAW98633.1| putative alkaline phosphatase synthesis sensor protein
           [Streptococcus equi subsp. zooepidemicus]
          Length = 441

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 83/427 (19%), Positives = 174/427 (40%), Gaps = 35/427 (8%)

Query: 390 DRTCIAASARLHTIQWNRE----NSLAMTFIPFEKANQFPENMPQNGIEPED-VDTRINK 444
                +    +   +W RE    +   +T           +         E   D    +
Sbjct: 38  TGLVASFYVLIMLFRWEREFRALHHHLLTASDHFLLVGQADLSAYAKQLTELKSDLLQKE 97

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            +++     + ++    + G+ +++ +  +L T+++       P      KP    LE  
Sbjct: 98  ARLKALSKNVEAVTSHLTMGMLLVSNQRELLLTSKS------LPAYFPEAKPPFAVLEDL 151

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCYSLTMHDIS 562
               +   + ++      QTL+K   G    + +L + ++    +        + ++D++
Sbjct: 152 KRIDLIALVNQVFDQK--QTLKKELTGLHDGDLILEVTLVPIFNQSHVVKEVLVLLYDLT 209

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
             +  +                  +F+A  SHE+RTP+T+I GF+E IK           
Sbjct: 210 AIRHYE--------------RLNLEFIANASHELRTPVTSIKGFAETIKEMPDDETSLKE 255

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             ++ + I      +  IV  LL +SK  + K  L      L   +      ++    +K
Sbjct: 256 --DFLDIIYNESLRLERIVEHLLTLSK--ANKTPLDLTEFQLRSFLLYTGQSMRPQLEQK 311

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           ++ +  +  ++I  + +D   + QI LN+LSNAI +T +GG+I +S+   +   V + V 
Sbjct: 312 QLELSYALEDSI-VVTSDQYLLSQIMLNLLSNAIQYTDNGGRIQLSSQRVAGG-VAITVA 369

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG+G++  EL++  + F ++   +  +  GTGLGL + K +     G+  + S   +G+
Sbjct: 370 DTGIGISQIELDRIFERFYRVNKGRSRQSGGTGLGLAIVKELSQLLGGQITVTSQLGEGS 429

Query: 803 LIEIIFP 809
              +  P
Sbjct: 430 QFTLFLP 436


>gi|168700450|ref|ZP_02732727.1| PAS/PAC sensor hybrid histidine kinase [Gemmata obscuriglobus UQM
           2246]
          Length = 842

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 77/652 (11%), Positives = 182/652 (27%), Gaps = 46/652 (7%)

Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYA 248
             +      +           +    +       ++ ++  P      +           
Sbjct: 75  ETDGAGDRFRWHAIAGRLAPNVWGTIARHACPCGEVIARNEPLLFAAPERHYPGAAAGPP 134

Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNH 308
             + +L              +         +            L     ++   L     
Sbjct: 135 VVEALLVPFHVGGRAVGTLWVIAHTPDRRFDAEDARLLTSLSRLAAAGWQTVTALDAAEE 194

Query: 309 PSLSAYFD--EGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGG 365
               +  +           +D  P   F  ++       N  F     Y S +++     
Sbjct: 195 ARDRSEAEGFRSREALRAILDTIPQRVFWKANDLTYLGCNRPFARDMGYDSPEEVVGKSD 254

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
                    L   +  +       D            +  +      +            
Sbjct: 255 ----YQGAWLELADQFRADDRRVIDSGVPKLDYEEVVVAADGSR-RWVRTSKQPLRGPDG 309

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
             +   G   +  + R  ++++  +   L         G    +   +        ++++
Sbjct: 310 AVVGVLGTYEDVTERRRIEQQLRDQEELLREAATLAHVGGWSFDPATLKGEWTAETARIY 369

Query: 486 GYPVEDILR-KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
           G                +    S +   L   ++      LE     +T   K +     
Sbjct: 370 GADPAARPDVASCLRHYDPADRSRLEEALRRAIADGTPYDLELRFTAATGVRKWVR---S 426

Query: 545 IKKLPFSSCYSLTMH----DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
           + +  +     + +     D++E +  + KL  ++K+              V+H+    L
Sbjct: 427 MGRPVYEGGQLVRVRGSIQDVTERRTLEEKLRQSQKMD-----AFGQLAGGVAHDFNNML 481

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
             I G+++++      P G+ R       I ++G     + + LL  ++    +      
Sbjct: 482 QVINGYADLLAEGL--PPGDER-AGVVAEIRKAGERSAALTSQLLAFAR----QQVAAPR 534

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720
            V +  A ++   +++     + + + T        +  D   ++Q+ LN+  NA    P
Sbjct: 535 LVDVGAAAADTAGMLRPLI-GEDVRLVTDLPRGGWPVFVDPGQLEQVLLNLAVNARDAMP 593

Query: 721 SGGQIIISTTHTS-------------NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
           +GG + ++    +              E  +L V DTG GM      +  +PF       
Sbjct: 594 AGGTLTVAARSEAVGPAEAALADMKAGEYTVLSVTDTGCGMPADVQARVFEPFFTTKG-- 651

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819
              G+GTGLGL     +V    G   + S   +G+  ++  P    + P D 
Sbjct: 652 --VGKGTGLGLATVYGIVSQAGGHVRVRSRVGEGSTFDVYLPRASGAGPGDS 701


>gi|88859894|ref|ZP_01134533.1| sensor histidine kinase/response regulator [Pseudoalteromonas
           tunicata D2]
 gi|88817888|gb|EAR27704.1| sensor histidine kinase/response regulator [Pseudoalteromonas
           tunicata D2]
          Length = 903

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 74/241 (30%), Positives = 125/241 (51%), Gaps = 6/241 (2%)

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
             L          +  KS FLA +SHEIRTP+T+IIG+++ I     G +    + +   
Sbjct: 411 QMLEQMTHELRDANEAKSRFLANMSHEIRTPMTSIIGYADGII---LGDIEPRNHAKAVQ 467

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I ++GN VL I+ND+LD+SKIE+ K+ + +    L   ++   S++     +K +  + 
Sbjct: 468 VIAQNGNHVLGIINDILDMSKIEANKLEVEWIETDLFATIANVESILGKQIRDKGLEFKV 527

Query: 689 SFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747
            +   +P  I+ D   ++QI LN+ +NA+ FT  G  I +  +     ++I+RVRD+G+G
Sbjct: 528 LYEFPLPNKIIIDPTRLRQILLNLTNNAMKFTDYGA-ITLIVSFKDE-KLIIRVRDSGIG 585

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           MT  + +K  + F Q   S   +  GTGLGL ++K +     G   + S   KG+   + 
Sbjct: 586 MTKEQTQKLFEAFSQADTSTTRKYGGTGLGLNISKNLAHKLGGDISVKSEIGKGSEFIVT 645

Query: 808 F 808
            
Sbjct: 646 L 646


>gi|269967446|ref|ZP_06181504.1| putative sensory box sensor histidine kinase/response regulator
           VieS [Vibrio alginolyticus 40B]
 gi|269827944|gb|EEZ82220.1| putative sensory box sensor histidine kinase/response regulator
           VieS [Vibrio alginolyticus 40B]
          Length = 1221

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 93/377 (24%), Positives = 166/377 (44%), Gaps = 16/377 (4%)

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
           E E   L  I++  +  + I +    +  +N A      Y  +   +             
Sbjct: 535 EAEKQWLMDIIKEINSLVFIHSENNHMEMSNCA-----NYNSKQCQQCKLKSDSAHAPLV 589

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLR--IIIKKLPFSSCYSLTMHDISEWK 565
                LT +++   R + E  + G   + K +     +I      +      + DI++ K
Sbjct: 590 NNFDELTTVIA-GKRISEEVASSGCELDIKHVYRERKVIASPSGKNKFVLTVIQDITQQK 648

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + +  L  A+K A+     + +FLA +SHE+RTPL+A  G  +++  Q    +      E
Sbjct: 649 EREQALIDAQKEAQTAVRARENFLATMSHELRTPLSAAHGILDLLNRQ----VTADSNRE 704

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
                 RS N +  +V+++LD SK+E+G + +      L + + +     +  A  K + 
Sbjct: 705 LIAQAIRSLNHLNTLVDEVLDYSKLEAGHLTVAPVKTDLLKTLCDVFRSFEPRALAKGLD 764

Query: 686 IRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDT 744
            + +    +   I  D   + QI  N+LSNA+ FT  G ++ IS       ++IL+V D+
Sbjct: 765 YKVTIKPFSNAFIEIDALRLVQITTNLLSNAVKFTAEG-EVGISVILHEK-QLILKVADS 822

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+GMT+ +LE  + PF Q  ++   +  GTGLGL +   ++D   G   I S    GT I
Sbjct: 823 GIGMTDDQLEGILNPFVQADDTITRKYGGTGLGLSIVDRLIDCMGGVLCIDSQFGLGTTI 882

Query: 805 EIIFPLYD-TSHPHDCI 820
            +  P+    S P  C+
Sbjct: 883 TVRLPIEHCDSEPDVCL 899


>gi|256838871|ref|ZP_05544381.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
 gi|256739790|gb|EEU53114.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
          Length = 882

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 85/367 (23%), Positives = 155/367 (42%), Gaps = 23/367 (6%)

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           I+      I  I  +  +   N      F   + +       +      P      + + 
Sbjct: 405 IMNNIQASIYFIKPDYTVKWRN---EVEFHDCIPEFGPANCFLVKNGVKPYCTRCTVAKA 461

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM--HDISEWKQEKNKLSHA 574
           +    +  +         + K L +         ++   +     D+++ KQ +N+L  A
Sbjct: 462 METKKQVDITNEF----GDGKYLHILANPVLDEHNNLIGVIFKKEDVTKQKQAENELRKA 517

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
           K+ AE+    KS FLA +SHEIRTPL AI+GFS ++              EY N I+ + 
Sbjct: 518 KEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSGLLA----VTENMEDKEEYINIINSNN 573

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
           +L+L ++ND+LD++KIE+G +      V +++  S+     +L A +  + +        
Sbjct: 574 DLLLQLINDILDLAKIEAGTLEFVDSDVDVNQLFSDIEQSSRLKAQD-GVQVCFVEKIPN 632

Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELE 754
             +  D   V Q+  N ++NAI FT  G   I+      ++E+   V+DTG G+   ++ 
Sbjct: 633 CILRTDRNRVSQVITNFINNAIKFTTQGS--ILFGYRRRDDELYFYVKDTGCGIAKDKIG 690

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP---LY 811
           +    F ++ +      +GTGLGL + + ++    G   + S   KG+      P   L 
Sbjct: 691 QVFTRFVKLNSF----VQGTGLGLSICQMIIKRLGGDIGVESEQGKGSTFWFTLPYSILE 746

Query: 812 DTSHPHD 818
               PH+
Sbjct: 747 MQEVPHE 753


>gi|218441969|ref|YP_002380298.1| multi-sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7424]
 gi|218174697|gb|ACK73430.1| multi-sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7424]
          Length = 695

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 92/618 (14%), Positives = 201/618 (32%), Gaps = 47/618 (7%)

Query: 221 KYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINL 280
              I +  +    L     +  + +  A        +    L +E +   + E+      
Sbjct: 94  SGVIKAGTAGVSLLTAVELIPIVPKALALPSPAQLEQANQQLQNEIAERVKVEEQLKQYQ 153

Query: 281 NQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG- 339
           +Q  ++    T +  + +              A            ++   +  + +    
Sbjct: 154 SQLEQRVAERTAELEASKESLRELFEREQQAKAEIQLYTERLTLALEAAKMGSWDWDLQK 213

Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399
           N  + +P    +  Y+              +    L    A   +    +         R
Sbjct: 214 NEVFWSPYHEQMFGYEPGTSQRTYANWKNRVHPEDLERVEAT--IQESIATGQDYNCEYR 271

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVM------- 452
           L            +        +     +   G+  +   +++ +  +            
Sbjct: 272 LL---LPNGELRWVNGFGRVNYDGEGHPIGMIGMVIDITHSKLAQEALRQSEETARQQLA 328

Query: 453 QLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY 512
           ++ +I      G+ I++ +   +  N +++++ G PVE  L       L           
Sbjct: 329 EIEAIYATAPIGLCILDTDYNYVRVNESLAQINGIPVEAHLGHTVREIL-PELGEFQEPI 387

Query: 513 LTEILSLDLRQTLEKITLGSTK------EEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQ 566
             +++             G T        + +++   + K        S+T  +I+E K 
Sbjct: 388 FKQVVQSGEP-VFNVEVHGVTPAQPDVERDWIVNYYPLKKADQQVIGISITAQEITERKL 446

Query: 567 EKNKLSHAKKIAEK--------------ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
            + +L    +   +               +     F   VSH+++ PL AI   SE I  
Sbjct: 447 AEKELKKRAEELIRLNTTLAHTMTLLKTRNQELDQFAYVVSHDLKAPLRAIAQLSEWI-E 505

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
           +  G    P   E  N + R    +  +VN LL+ S++  G+  +  E V +++ + E I
Sbjct: 506 EDLGEQLPPDNREQLNLLRRRVYRLEGLVNGLLEYSRV--GRTEVLIETVVVEDLLREVI 563

Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP-SGGQIIISTTH 731
             +   A       R +  +++P +      + Q+  N++SN I       GQ+ IS   
Sbjct: 564 DSLAPEA-----SFRINIDSDMPTLKTKKILLNQVFSNLISNGIKHHDRPDGQMRISVEE 618

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
             +      V D G G+     +K  + F  + +  +   E TG+GL + K +++   G 
Sbjct: 619 RPDMY-EFAVTDDGPGILPQYHQKIFQIFQTLKS--RDEQENTGIGLSIVKKIIEGEGGT 675

Query: 792 FYIFSTPAKGTLIEIIFP 809
            +I S   +GT     +P
Sbjct: 676 IWIESQEQQGTTFRFTWP 693



 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/243 (8%), Positives = 64/243 (26%), Gaps = 22/243 (9%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           +D       ++E L +  G      +G  + ++   L          +++     +    
Sbjct: 344 LDTDYNYVRVNESLAQINGIPVEAHLGHTVREILPELGEFQEPIFKQVVQSGEPVFNVEV 403

Query: 149 L--WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
               P +       I +   P+   +++  G                    K+  ++   
Sbjct: 404 HGVTPAQPDVERDWI-VNYYPLKKADQQVIGIS--ITAQEITERKLAEKELKKRAEELIR 460

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
           L+       ++ K               +  ++ + +  +          +    +  + 
Sbjct: 461 LNTTLAHTMTLLK------------TRNQELDQFAYVVSHDLKAPLRAIAQLSEWIEEDL 508

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
                 ++   +NL +    +  G +    +      S      +       E+L  E +
Sbjct: 509 GEQLPPDNREQLNLLRRRVYRLEGLVNGLLE-----YSRVGRTEVLIETVVVEDLLREVI 563

Query: 327 DKC 329
           D  
Sbjct: 564 DSL 566


>gi|150010061|ref|YP_001304804.1| two-component system sensor histidine kinase [Parabacteroides
           distasonis ATCC 8503]
 gi|149938485|gb|ABR45182.1| two-component system sensor histidine kinase [Parabacteroides
           distasonis ATCC 8503]
          Length = 882

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 85/367 (23%), Positives = 155/367 (42%), Gaps = 23/367 (6%)

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           I+      I  I  +  +   N      F   + +       +      P      + + 
Sbjct: 405 IMNNIQASIYFIKPDYTVKWRN---EVEFHDCIPEFGPANCFLVKNGVKPYCTRCTVAKA 461

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM--HDISEWKQEKNKLSHA 574
           +    +  +         + K L +         ++   +     D+++ KQ +N+L  A
Sbjct: 462 METKKQVDITNEF----GDGKYLHILANPVLDEHNNLIGVIFKKEDVTKQKQAENELRKA 517

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
           K+ AE+    KS FLA +SHEIRTPL AI+GFS ++              EY N I+ + 
Sbjct: 518 KEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSGLLA----VTENMEDKEEYINIINSNN 573

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
           +L+L ++ND+LD++KIE+G +      V +++  S+     +L A +  + +        
Sbjct: 574 DLLLQLINDILDLAKIEAGTLEFVDSDVDVNQLFSDIEQSSRLKAQD-GVQVCFVEKIPN 632

Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELE 754
             +  D   V Q+  N ++NAI FT  G   I+      ++E+   V+DTG G+   ++ 
Sbjct: 633 CILRTDRNRVSQVITNFINNAIKFTTQGS--ILFGYRRRDDELYFYVKDTGCGIAKDKIG 690

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP---LY 811
           +    F ++ +      +GTGLGL + + ++    G   + S   KG+      P   L 
Sbjct: 691 QVFTRFVKLNSF----VQGTGLGLSICQMIIKRLGGDIGVESEQGKGSTFWFTLPYSILE 746

Query: 812 DTSHPHD 818
               PH+
Sbjct: 747 MQEVPHE 753


>gi|197119319|ref|YP_002139746.1| sensor histidine kinase response regulator [Geobacter bemidjiensis
           Bem]
 gi|197088679|gb|ACH39950.1| sensor histidine kinase response regulator [Geobacter bemidjiensis
           Bem]
          Length = 642

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 94/519 (18%), Positives = 174/519 (33%), Gaps = 39/519 (7%)

Query: 306 RNHPSLSAYFDEGENLTPETVDKCPIP----FFVYSHGNLFYANPSFLLLTKYKSVDDIE 361
                L A   E E    +  +          F           P+   L      D  E
Sbjct: 22  AARLELQAKSAELERARNDLENFLSCAWTATAFFDRELRPTRLTPTLAQLLDLSPDDTGE 81

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
           +   L   LD P               S+R                          F   
Sbjct: 82  LLPKLCRRLDWPNADAELRSVVGGAVVSEREVSDLL-----------TGHQFLLRFFPYL 130

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAV 481
           N   E         +  D ++  +++     +  ++ E T D I + +R  + L  N+A 
Sbjct: 131 NAEGETEGAVLKLIDISDYKLADQRLL----EYRAVFECTGDMIYVFDRNYLFLLANKAY 186

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
            +      E+++ +     L     + +  ++    +       E       K  + + +
Sbjct: 187 LECHRVRHEELVGRTVQDLLGPMMFAEVKGHIDACFA-GEEVIFESRYDYPAKGVRDILI 245

Query: 542 RIIIKKLPFS-SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
                K        +  + D++E  Q + +L HA+K+              ++H+    L
Sbjct: 246 TYTPLKKGDRVDRVACLIKDMTERTQLEEQLRHAQKM-----EAIGTLAGGIAHDFNNLL 300

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
           T I G++ +I+    G          A  I  S     ++   LL  S+    K  ++  
Sbjct: 301 TVIAGYASLIQFNSQGS----EVASMAAEIQGSVERAAEMTRGLLAFSR----KQAVNLM 352

Query: 661 PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTP 720
           PV L++ V      ++    E  I +    ++    + +D   ++Q+  N++ NA    P
Sbjct: 353 PVELNQLVEGLHKSLRRLITE-DIELAVEVSSVPLIVSSDKGQLEQVLFNLVVNARDAMP 411

Query: 721 SGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
           SGG+++I T        ++ V DTGVGM+    ++  +PF            GTGLGL  
Sbjct: 412 SGGKLLIRTERLQLNHALITVADTGVGMSREVQDRVFEPFFTTKELGV----GTGLGLST 467

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819
              ++  + G   + S P  GT+  I  PL +     D 
Sbjct: 468 CYGIIKKHNGIIELQSEPGAGTVFSIYLPLSEELPEADS 506


>gi|313113962|ref|ZP_07799518.1| response regulator receiver domain protein [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310623725|gb|EFQ07124.1| response regulator receiver domain protein [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 858

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 79/253 (31%), Positives = 129/253 (50%), Gaps = 9/253 (3%)

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           ++ +++ +KL  A +     +  K +FL  +SH+IRTP+ AIIGF+  +           
Sbjct: 326 TQLEEQNHKLEIALQHEGAANRAKREFLFNMSHDIRTPMNAIIGFT-SLAATHID--NRE 382

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
           + ++Y   I  S   +L ++ND+LD+S+IESGK+ +  + V L + V +  S++Q   + 
Sbjct: 383 QVLDYLKKISTSSQHLLSLINDVLDMSRIESGKVKIEEKAVHLPDLVHDVRSIIQPNVSA 442

Query: 682 KRILIRTS-FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----- 735
           KR+ +           I+ D   + QI LNILSNAI FTP+GG I I     +       
Sbjct: 443 KRLSLFIDTVDVENEDIITDPLRLNQILLNILSNAIKFTPTGGMISIRIAEKNGAPAGRA 502

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
               R++D G+GM+    +   + F +  NS     +GTGLG+ + K +VD   G   I 
Sbjct: 503 CYEFRIKDNGIGMSEEFQKHIFEEFAREENSTVSGIQGTGLGMSITKNIVDLMGGSITIE 562

Query: 796 STPAKGTLIEIIF 808
           S P KG+   +  
Sbjct: 563 SEPGKGSEFIVNL 575


>gi|158425731|ref|YP_001527023.1| multi-sensor hybrid histidine kinase [Azorhizobium caulinodans ORS
           571]
 gi|158332620|dbj|BAF90105.1| multi-sensor hybrid histidine kinase [Azorhizobium caulinodans ORS
           571]
          Length = 1121

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 74/280 (26%), Positives = 142/280 (50%), Gaps = 11/280 (3%)

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
            + +       +L M +I   K+   KL  AK++AE  +  KS ++  +SHE+RTPL AI
Sbjct: 631 RVAQEESQRQTTLLMREIEAHKRTDAKLQKAKEVAEAANLAKSRYVVGISHELRTPLNAI 690

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +G++++++     P       +    + RS   +  +++ LLDISKIE+G+++L+ + V 
Sbjct: 691 LGYAQLLERDTSIP---AHRRDAIRVVRRSSEHLSGLIDGLLDISKIEAGRLHLYRDEVR 747

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSG 722
           + + + + + + +L A+ + I      +  +P ++  D + ++QI +N+LSNAI FT  G
Sbjct: 748 IRDLLDQLVDMFRLQASARGIEFIHMRSERLPAVVFTDEKRLRQILINLLSNAIKFTAKG 807

Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
             + +  T+  N+     V DTG+G+   E  +  +PF +          G GLGL + K
Sbjct: 808 -HVALRVTYR-NQVAEFEVEDTGIGIAPEERGRIFEPFERGSRGGAFNAIGIGLGLTITK 865

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIF-----PLYDTSHPH 817
            + +   G+  + S   KG+  ++       P  + + P 
Sbjct: 866 LLTEIMGGEISLKSELDKGSTFKVRLLLSEAPGREAAPPE 905


>gi|90415638|ref|ZP_01223572.1| sensor histidine kinase with a response regulator receiver domain
           [marine gamma proteobacterium HTCC2207]
 gi|90332961|gb|EAS48131.1| sensor histidine kinase with a response regulator receiver domain
           [marine gamma proteobacterium HTCC2207]
          Length = 1142

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 72/265 (27%), Positives = 140/265 (52%), Gaps = 7/265 (2%)

Query: 545 IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
           + +        L +++I   ++   +L  +K+ A+  +  KS +L R+SHE+RTPL +++
Sbjct: 649 LAQDESQRQTQLLINEIKAHERTDLELQQSKEKADAANIAKSRYLERISHELRTPLNSVM 708

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           G++++++     PL      E    +  S   + D++  L+DISKIE+G+++LH   V +
Sbjct: 709 GYAQLLEGADDIPLP---RRESIKVMRSSSEHLTDLIEGLVDISKIEAGRLDLHRNKVDM 765

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG 723
              + + + + Q+ A  K I +  S    +P  + AD + ++Q+ +N++SNAI FTP G 
Sbjct: 766 LAMIEQLMYMFQIQAQSKNISLNFSHQERLPETVFADGKRLRQVMINLISNAIKFTPEGS 825

Query: 724 QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
            + +   +  N+     V DTGVG+ + ++ +  + F +I N    +  G+GLGL + +A
Sbjct: 826 -VSVDLKYR-NQVAYFSVTDTGVGIEDEDISRISEAFVRIANPM-HQVAGSGLGLAITQA 882

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIF 808
           +V    G   I S   +G+   +  
Sbjct: 883 LVHRMGGDLSIESRFGEGSTFTVSL 907


>gi|293368955|ref|ZP_06615556.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
 gi|292635975|gb|EFF54466.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
          Length = 534

 Score =  274 bits (701), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 81/381 (21%), Positives = 161/381 (42%), Gaps = 21/381 (5%)

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAI--INREGIILSTNRAVSKLFGYPVEDIL 493
           E       +R++      L SI+      I +   +    +L  N +++  +G       
Sbjct: 162 EIAVREYKEREVRASKT-LSSIMNNMGVDIYVNSFDSHD-MLYANESMAAPYGGIEHFEG 219

Query: 494 RKPFTVFLEQNTPSVMNHYLTEIL-SLDLRQTLEKITLGSTKEEKLLSL-RIIIKKLPFS 551
           +K +    +  T          ++    L   +         ++    +       +   
Sbjct: 220 KKCWQALYKDKTGECEFCPKKHLIDENGLPTKVYSWDYQRPFDKCWFRVFSAAFAWIDGQ 279

Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
             + +T  DI   K  + +L  AK+ AE     KS FLA +SHEIRTPL AI+GF+ ++ 
Sbjct: 280 MAHVITSVDIDHQKTIEEELRIAKEKAENLDRLKSAFLANMSHEIRTPLNAIVGFASLLV 339

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
                        +Y + +  +  L+L +++D+LD+SKIE+G ++   + + +     + 
Sbjct: 340 ESD----DKKERQDYVDIMQENTELLLQLISDILDLSKIEAGTLDFTMDYLDIKSFCEDI 395

Query: 672 ISLVQLYANEKRILIRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
           I    +   +K + +    A  +P   I  D + + Q+  N ++NA+ FT  G QI++  
Sbjct: 396 IRNYDIK-EDKPVPVL--LAPTLPNFYIYTDKKRLMQVITNFINNALKFTNKG-QILLEY 451

Query: 730 TH-TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                  E+   V DTG+G+   ++++    F ++ +      +GTGLGL + +++++  
Sbjct: 452 HLKEDTSEIEFSVADTGMGIEPDKVDRVFDRFVKLNSF----SKGTGLGLSICRSIIEHL 507

Query: 789 MGKFYIFSTPAKGTLIEIIFP 809
            G   + S    G+      P
Sbjct: 508 GGTIGVESEMGTGSRFWFTHP 528


>gi|262377433|ref|ZP_06070656.1| GacS-like sensor kinase [Acinetobacter lwoffii SH145]
 gi|262307663|gb|EEY88803.1| GacS-like sensor kinase [Acinetobacter lwoffii SH145]
          Length = 935

 Score =  274 bits (701), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 78/243 (32%), Positives = 127/243 (52%), Gaps = 14/243 (5%)

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
           +  A   +  KS FLA +SHE+RTPL +I GF  ++  Q  G L N + + Y   I +S 
Sbjct: 279 RDQAISANQAKSVFLANISHELRTPLNSIDGFIHLLLRQ--GNLSNEQSL-YLQTIRKSS 335

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
             +L ++ND+LD SKI++GK+ L   P  L+EA+ + + ++   A +K I +   +A+ +
Sbjct: 336 AHLLALINDVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKHIDMAFYYADGV 395

Query: 695 P-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMT 749
           P  I+ D    KQI  N++SNAI FTP G +II+      +      +   V+D+G+G++
Sbjct: 396 PKHIIGDALRFKQILTNLISNAIKFTPDG-EIIVRARMEHDGMDQCVLHFSVQDSGIGLS 454

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP-----AKGTLI 804
             + +K  + F Q   S   +  GTGLGL ++K +V    G+             KG+  
Sbjct: 455 GTDRKKLFESFSQGDTSVTRQFGGTGLGLAISKQLVSLMHGQIGFEDNQERAPTEKGSTF 514

Query: 805 EII 807
              
Sbjct: 515 WFT 517


>gi|117618949|ref|YP_856744.1| two-component system sensor protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117560356|gb|ABK37304.1| two-component system sensor protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 1060

 Score =  274 bits (701), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 71/247 (28%), Positives = 121/247 (48%), Gaps = 8/247 (3%)

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
           ++ A + +  K DF+A +SHEIRTP+ AI+G + +++        +         I ++G
Sbjct: 339 QQEAARLARVKGDFIANMSHEIRTPMNAIMGLAYLLEQGGL----DDGQRALVRKIHQAG 394

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN- 693
             +L I+ND+LD SKIESG++ L   P SL+E +    +++      K + +  S A   
Sbjct: 395 QALLGIINDILDFSKIESGRLELEQVPFSLEEVLDHVAAIMSTCVGNKHLELVVSSAPEQ 454

Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEE--VILRVRDTGVGMTN 750
              ++ D   ++Q+ LN+  NAI FT  G  ++ +      +    ++ RVRDTG+G+  
Sbjct: 455 AAHLVGDALRLEQVLLNLTGNAIKFTERGEVEVRVELEAEQDGMATLLFRVRDTGIGIPP 514

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            +       F Q  +S   R  GTGLGL +++ +V+   G   + S   KG+       L
Sbjct: 515 EQQANIFNAFSQADSSTSRRFGGTGLGLTISRRLVNLMGGDIGVTSELGKGSEFWFRVRL 574

Query: 811 YDTSHPH 817
                P 
Sbjct: 575 EQVERPE 581


>gi|117923577|ref|YP_864194.1| periplasmic sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117607333|gb|ABK42788.1| periplasmic sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 948

 Score =  274 bits (701), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 81/262 (30%), Positives = 127/262 (48%), Gaps = 10/262 (3%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           + ++ +  L  A   A K +  KSDFLA +SHEIRTP+ AI+G    +            
Sbjct: 413 QRRRSEIALRIASDEALKANRAKSDFLAVMSHEIRTPMNAIMG----MTELLEETELTTI 468

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
              Y +    SG  +L ++ND+LDISK+E+G+M +   P  L   + +A  ++   A EK
Sbjct: 469 QRNYLSICRSSGQNLLQLINDILDISKVEAGRMEVAVAPFHLHRIIHDANQVILFRAQEK 528

Query: 683 RILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQ---IIISTTHTSNEEVI 738
            +         +P IL  D   ++QI +N L N++ FT SG     +         ++++
Sbjct: 529 GLNQIVYIDPAVPTILLGDQARIRQILINFLGNSVKFTQSGTIATLVTTRAHANKEDQLV 588

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           + V DTG+G+   E E   K F Q+ +S Q +  GTGLGL +   +V    G   + S  
Sbjct: 589 IHVVDTGIGIEQSEQEAIFKAFHQVDSSNQRQQGGTGLGLAICLKLVALMQGSVSLSSRA 648

Query: 799 AKGTLIEIIFPLYDTSHPHDCI 820
            KG+   +  PL  T  P + I
Sbjct: 649 GKGSTFTLTLPL--TVAPAEQI 668


>gi|327296313|ref|XP_003232851.1| DRK1 histidine kinase [Trichophyton rubrum CBS 118892]
 gi|326465162|gb|EGD90615.1| DRK1 histidine kinase [Trichophyton rubrum CBS 118892]
          Length = 1321

 Score =  274 bits (701), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 74/265 (27%), Positives = 130/265 (49%), Gaps = 22/265 (8%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           +S  +    + + A++ AE  +  KS+FLA +SHEIRTP+  IIG +++  +        
Sbjct: 703 VSSLRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDD---LK 759

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
           P   E  N +    N +L I++D+LDISKIE+ +M +   P ++   V  A+  + + AN
Sbjct: 760 PYPREMLNVVHSLANSLLTIIDDILDISKIEANRMVIESIPFTMRGTVFNALKTLAVKAN 819

Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTT--------- 730
           EK + +     +++P  ++ D   ++QI LN++ NAI FT  G ++ +            
Sbjct: 820 EKFLNLTYQVDSSVPDYVIGDPFRLRQIILNLVGNAIKFTEHG-EVTLEIKKHVPPPPAE 878

Query: 731 -------HTSNEEV-ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
                     +E      V+DTG+G+   +L+     F Q   S   +  GTGLGL ++K
Sbjct: 879 GEPEREVCADDEYAYEFSVQDTGIGIAKDKLDMIFDTFQQADGSTTRKFGGTGLGLSISK 938

Query: 783 AMVDANMGKFYIFSTPAKGTLIEII 807
            +V+   G  ++ S   +G+     
Sbjct: 939 RLVNLMGGDVWVTSEYGRGSTFHFT 963


>gi|298694775|gb|ADI97997.1| staphylococcal respiratory response protein B [Staphylococcus
           aureus subsp. aureus ED133]
          Length = 583

 Score =  274 bits (701), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 62/376 (16%), Positives = 154/376 (40%), Gaps = 41/376 (10%)

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
            +   +   +        S++ +  +G+  IN    I+ +N+  + +             
Sbjct: 242 TEIEEHVDALSTSKNIRDSLINSMVEGVLGINESRQIILSNKMANDIMD----------- 290

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK---KLPFSSCY 554
              ++++  + +   + +       +  +          +   +        +    S  
Sbjct: 291 --NIDEDAKAFLLRQIEDTFKSKQTEMRDLEM-----NARFFVVTTSYIDKIEQGGKSGV 343

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
            +T+ D++                      K DF+A VSHE+RTP++ + G++E I +  
Sbjct: 344 VVTVRDMT--------------NEHNLDQMKKDFIANVSHELRTPISLLQGYTESIVDGI 389

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     E    +      +  +VN+LL+++++++  ++++ E   +   + +    
Sbjct: 390 VTE--PDEIKESLAIVLDESKRLNRLVNELLNVARMDAEGLSVNKEVQPIAALLDKMKIK 447

Query: 675 VQLYANEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
            +  A++  + +  ++     R+ + D+  + Q+  N++ NA  +T  G +I I+     
Sbjct: 448 YRQQADDLGLNMTFNYCKK--RVWSYDMDRMDQVLTNLIDNASRYTKPGDEIAITCAENE 505

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
           +E++ L ++DTG G+    L++    F ++  ++    +GTGLGL + K +++ + G   
Sbjct: 506 SEDI-LYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQGTGLGLFICKMIIEEHGGSID 564

Query: 794 IFSTPAKGTLIEIIFP 809
           + S   KGT   I  P
Sbjct: 565 VKSELGKGTTFIIKLP 580


>gi|241896076|ref|ZP_04783372.1| sensor histidine protein kinase [Weissella paramesenteroides ATCC
           33313]
 gi|241870676|gb|EER74427.1| sensor histidine protein kinase [Weissella paramesenteroides ATCC
           33313]
          Length = 458

 Score =  274 bits (701), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 82/463 (17%), Positives = 185/463 (39%), Gaps = 35/463 (7%)

Query: 349 LLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRE 408
           L LT      ++ +   +  LL             +   R D        +L  ++    
Sbjct: 29  LWLTSLTGDQNVTLKWHVLVLLSMILAGATTLALEIQRQRRDAHLTLFIEKLQDLETTHT 88

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468
           ++  +   P +        +                + M+ +   + +++E    G+  I
Sbjct: 89  HTAHVLMHPDDSLAPLAAAINSVQHLN-----SKRIKIMQEQSSTMETLMENMPLGVLQI 143

Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528
             E  I+  N   S+L G     ++ + +   ++ +    +     + L    +    + 
Sbjct: 144 TPERKIIQANDQASQLLGV-QHSLINQHYDNVIKYHR---LMELFEQALKQKKKF---RE 196

Query: 529 TLGSTKEEKLLSLRIIIKKLPFSS-CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSD 587
            +    ++K + + ++  +         + ++D++E  Q K+               ++ 
Sbjct: 197 LV--KIDDKTVDVSVVYYETRERHFELLVLLYDMTEVIQMKD--------------MQTA 240

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           F+A  SHE+RTPLT+I GF+E + N       +    ++   I      +LD+ +D+L +
Sbjct: 241 FVANASHELRTPLTSISGFTETLLNGAQEDPTD--RQQFLEIIQSETKRLLDLTDDILTL 298

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQI 707
           +K+      L  +  ++ E V +  +      +   + ++    + +  +  +  + +QI
Sbjct: 299 AKVPERANTL--QQFNMSEMVEKIFNAKAEIKDNLNLTLKNEVNDTL-VVNQNKSNFEQI 355

Query: 708 ALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
             N++ NA+ +    G + +S   T+N E++  V+DTG+G+ + E  +  + F ++  S+
Sbjct: 356 LTNLIGNAMKYNRQDGSVKVSAMVTAN-ELVFAVKDTGLGIPSDEQNRIFERFYRVDKSR 414

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
                GTGLGL +   +V+   GK  + S    GT I +  PL
Sbjct: 415 TKSIPGTGLGLAIVNDLVEQAQGKIELTSQVGVGTTITVTLPL 457


>gi|85858961|ref|YP_461163.1| signal transduction histidine kinase [Syntrophus aciditrophicus SB]
 gi|85722052|gb|ABC76995.1| signal transduction histidine kinase with reciever domain protein
           [Syntrophus aciditrophicus SB]
          Length = 649

 Score =  274 bits (701), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 94/526 (17%), Positives = 188/526 (35%), Gaps = 57/526 (10%)

Query: 324 ETVDKCPIPFFVYSHGNLFYANP-------SFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
           E  ++ P+  +V+   +    N         +  +  Y   +           +      
Sbjct: 2   EIFEQFPLGVYVHFFQHKVRINRMNLFYSLRWKRMLGYTESEVGNTPDEWDKRVHP---E 58

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           D    + V+            +    +  N      M            + +   G   +
Sbjct: 59  DRKRCQEVLEAHLSGKTPVYESEYRLLCKNGTYKWIMDRGTVINRTADGKPLRVIGTHAD 118

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
               R+ + ++     +L  I+    D   +I+RE  ++S N+A+ K+ G   E++L K 
Sbjct: 119 ITRRRLMEDELRESRQRLADIINFLPDATLVIDRESRVISWNQAIEKMTGISAEEMLGKG 178

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE------------EKLLSLRII 544
              +            +   L  D++   +        E               L L   
Sbjct: 179 NYEYALPFYGERRPILIDHALRPDMQAKKQYTAFYRAGEILFGQSCVSALPSGELHLSAS 238

Query: 545 IKKLPFSSCYSLT----MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
              L  S    +     + D +E K+ +++L+ A+K+              V+H++   L
Sbjct: 239 ASVLRDSRGEIIAAIECIRDNTELKKLQDRLNRAEKMEG-----LGRLAGGVAHDLNNVL 293

Query: 601 TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
             ++G+SE++     G   +     YA  I +SG     IV DLL +++    +  +  E
Sbjct: 294 GVLVGYSELLAETVPG---DSPLKRYAKNILQSGMRGAAIVQDLLTLAR----RGVVVSE 346

Query: 661 PVSLDEAVSEAISLVQ---LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
            ++L++ ++++I   +   L  +   + IRT  A  +  I      + +  +N++ NA  
Sbjct: 347 VINLNQVIADSIKTPEYEMLKFDHPDVRIRTHLAEGLLNIKGSPIHLSKTVMNLIVNAAE 406

Query: 718 FTPSGGQIIIST-------------THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764
                G + I T             +    +  +L + DTG G++  +L+K  +PF    
Sbjct: 407 AVSGCGDVTIRTENRYLDMPVRGYGSIQEGDYAVLSISDTGSGISADDLDKIFEPFYTKK 466

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
              +    GTGLGL +    V  + G   + S   KGT   I FP+
Sbjct: 467 VMGKS---GTGLGLAVVWGTVKDHNGYIDVHSEEGKGTTFAIYFPV 509



 Score = 43.1 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 23/200 (11%), Positives = 48/200 (24%), Gaps = 16/200 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN-HIGDLLKRQNTWYGKT 147
           ID    +   ++ + K  G  A +M+G    + +   + +     I   L+       + 
Sbjct: 150 IDRESRVISWNQAIEKMTGISAEEMLGKGNYEYALPFYGERRPILIDHALRPDMQAKKQY 209

Query: 148 TLWPIEGTNLYVPIDLAALP------------IYSRNREFSGFRGFGIVHVNRVDNDPRA 195
           T +   G  L+    ++ALP            +     E         +  N      + 
Sbjct: 210 TAFYRAGEILFGQSCVSALPSGELHLSASASVLRDSRGEIIAAIEC--IRDNTELKKLQD 267

Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVS-SLTEYYAHKDDVL 254
              R +K              +      +             +       +         
Sbjct: 268 RLNRAEKMEGLGRLAGGVAHDLNNVLGVLVGYSELLAETVPGDSPLKRYAKNILQSGMRG 327

Query: 255 KTEKYPLLTSEESSLPEQED 274
                 LLT     +   E 
Sbjct: 328 AAIVQDLLTLARRGVVVSEV 347


>gi|257082419|ref|ZP_05576780.1| hypothetical protein EFJG_00863 [Enterococcus faecalis E1Sol]
 gi|257416224|ref|ZP_05593218.1| hypothetical protein EFFG_01166 [Enterococcus faecalis AR01/DG]
 gi|256990449|gb|EEU77751.1| hypothetical protein EFJG_00863 [Enterococcus faecalis E1Sol]
 gi|257158052|gb|EEU88012.1| hypothetical protein EFFG_01166 [Enterococcus faecalis ARO1/DG]
          Length = 576

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 73/364 (20%), Positives = 160/364 (43%), Gaps = 32/364 (8%)

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
            Q   +L+    G+ II+ +G +   N  + ++ G        K       +        
Sbjct: 235 EQFHELLDELMIGVFIIDTQGRLRLLNPKMQEMLGLSA-----KNMQSNYLEVIQDADLI 289

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY--SLTMHDISEWKQEKN 569
           +L   +  +     ++IT+        L L +       ++ Y      +D++  +Q + 
Sbjct: 290 HLIHQVVAEKNSLHQEITVTQGPTPLRLDLSLRYLDDQSANDYQVLGIAYDLTRVRQLE- 348

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE-YAN 628
                          + DF++ VSHE++TP+T+++GF+E + +   G   +P+ ++ + +
Sbjct: 349 -------------KMQKDFVSNVSHELKTPVTSLLGFTETLID---GAKEDPKVLDQFLH 392

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            + +    +  ++ ++L++S+  S  +    + ++L++ ++E +   Q     K++    
Sbjct: 393 IMQKDAQRLQQLIQEILELSR-GSATIPYAEQEITLEKFITEILGSYQQQLAAKQLK--- 448

Query: 689 SFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
           +  + +P             I  N++ NAI ++   GQI IS     N+++ L V+DTG+
Sbjct: 449 TVVHGLPESQFFTKYELFYPIVKNLIENAIQYSQENGQITISYAIE-NQQLRLSVQDTGI 507

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G++  + E+  + F ++  ++     GTGLGL + +   +   GK  I S    GT   I
Sbjct: 508 GISQKDQERIFERFYRVDKARSRHSGGTGLGLAIVQNYTELLGGKIAIDSHLGLGTTFTI 567

Query: 807 IFPL 810
             PL
Sbjct: 568 TLPL 571


>gi|298490818|ref|YP_003720995.1| multi-sensor signal transduction histidine kinase ['Nostoc azollae'
           0708]
 gi|298232736|gb|ADI63872.1| multi-sensor signal transduction histidine kinase ['Nostoc azollae'
           0708]
          Length = 499

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 82/407 (20%), Positives = 156/407 (38%), Gaps = 22/407 (5%)

Query: 421 ANQFPENMPQNGIEPEDVDTRIN----------KRKMEIEVMQLCSILEATSDGIAIINR 470
             +  +            D RI           KR++     QL ++L   +D +  IN 
Sbjct: 93  RAKITQPFGYIVKPFTITDLRIAIEIALSQHKLKRELRENRDQLATLLNCMNDAVVAINE 152

Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT---PSVMNHYLTEILSLDLRQTLEK 527
           +G++   N     L G+  E+ L    +  L+        +  + +  +L       L +
Sbjct: 153 QGVVTFMNPVAENLTGWKQEEALGYNISDILKIIDDVTEEITANPIANVLQQQEVVYLGE 212

Query: 528 ITLGSTKEEKLLSLRIIIKKL---PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
                 K  + + +             S   +   D+SE +Q++  L  A K  ++ +  
Sbjct: 213 FNSLINKNGQRIPIGHSALPFKLNNEISGAVVVFWDLSERRQKE-YLEQALKKEQELNRL 271

Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
            S F++ VSHE R PL  I    E +   +   L   +   Y   I  +   +  ++ D+
Sbjct: 272 NSLFISTVSHEFRNPLAMIQTAVE-LIEIQGKNLTETKKNTYFTRIYDAVQSMEKLMEDV 330

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704
           L + K E+  +  +   + LD    + I       N     I  +  ++    + + R +
Sbjct: 331 LFMGKAEADYLGHNPVSIKLDNFCRDLIEEFTFIKNSSH-KIIFNCNSHHTDAMMNERLL 389

Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHT-SNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
             + +N+LSNA+ ++  G +I  + +   +    I  ++D G+G+   +  +    F + 
Sbjct: 390 HYLFINLLSNAVKYSHPGSEIQFNLSCDLTTGVAIFEIQDQGIGIPKLDQNRIFDSFFRA 449

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             S      G GLGL + K  VDA+ G+  I S    GT   +  PL
Sbjct: 450 --SNVQSIHGNGLGLVVVKRCVDAHNGEINISSQEGMGTTFTVTLPL 494



 Score = 43.5 bits (101), Expect = 0.16,   Method: Composition-based stats.
 Identities = 23/212 (10%), Positives = 58/212 (27%), Gaps = 19/212 (8%)

Query: 313 AYFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
               E  +     ++        +   G + + NP    LT +K  + +        L  
Sbjct: 127 RELRENRDQLATLLNCMNDAVVAINEQGVVTFMNPVAENLTGWKQEEAL-GYNISDILKI 185

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
              +++     P+      +  +        I  N +                 E     
Sbjct: 186 IDDVTEEITANPIANVLQQQEVVYLGEFNSLINKNGQRIP--IGHSALPFKLNNEISGAV 243

Query: 432 GIEPEDVDTRIN---KRKM--EIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
            +  +  + R     ++ +  E E+ +L S+       I+ ++ E      N        
Sbjct: 244 VVFWDLSERRQKEYLEQALKKEQELNRLNSLF------ISTVSHEFR----NPLAMIQTA 293

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYLTEILS 518
             + +I  K  T   +    + +   +  +  
Sbjct: 294 VELIEIQGKNLTETKKNTYFTRIYDAVQSMEK 325



 Score = 38.1 bits (87), Expect = 6.3,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 40/116 (34%), Gaps = 7/116 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN----HIGDLLKRQNTWY 144
           I+  G +  ++       G    + +G  + D+  I+           I ++L++Q   Y
Sbjct: 150 INEQGVVTFMNPVAENLTGWKQEEALGYNISDILKIIDDVTEEITANPIANVLQQQEVVY 209

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
                  I      +PI  +ALP +  N E SG     +            L + L
Sbjct: 210 LGEFNSLINKNGQRIPIGHSALP-FKLNNEISGA--VVVFWDLSERRQKEYLEQAL 262


>gi|307822393|ref|ZP_07652625.1| histidine kinase [Methylobacter tundripaludum SV96]
 gi|307736959|gb|EFO07804.1| histidine kinase [Methylobacter tundripaludum SV96]
          Length = 673

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 76/262 (29%), Positives = 137/262 (52%), Gaps = 10/262 (3%)

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            +I   KQ + KL  AK  AE  +  KS FLA +SHE+RTP+ A++GFS++++       
Sbjct: 188 QEIIIRKQTEQKLLAAKNEAEAANRAKSIFLANMSHELRTPMNAVLGFSQLMQKD---SD 244

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
            +P   E  N I+ SG  +L+++ND+LD++KIE+G++ +      L   + + I ++   
Sbjct: 245 LSPEQRETLNIINNSGKHLLELINDVLDMAKIEAGRVIVENGNFDLGALIRDTIDMMHQR 304

Query: 679 ANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTT--HTSNE 735
           A  K + +    +++ PR + +D    +QI LN++ NAI +T  G  I++ T       +
Sbjct: 305 AEAKGLELFLDQSSSFPRFVNSDEAKFRQILLNLVGNAIKYTQKGRVIVLLTAENLPDTQ 364

Query: 736 EVIL--RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
           + +L   ++DTG+G+   +L      F Q+   ++   +G+GLGL + K   +   G+  
Sbjct: 365 QCLLICEIKDTGIGIAKQDLPFIFDTFVQV--GRESDQQGSGLGLRITKQYAELMGGQVT 422

Query: 794 IFSTPAKGTLIEIIFPLYDTSH 815
           + S   KG+   +  P      
Sbjct: 423 VTSELNKGSSFILTLPAAKVDQ 444


>gi|330844471|ref|XP_003294148.1| hypothetical protein DICPUDRAFT_51346 [Dictyostelium purpureum]
 gi|325075445|gb|EGC29332.1| hypothetical protein DICPUDRAFT_51346 [Dictyostelium purpureum]
          Length = 952

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 96/422 (22%), Positives = 174/422 (41%), Gaps = 37/422 (8%)

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG 472
           +     E  N    +              I K+++  E++   ++L  +     ++N++G
Sbjct: 107 IVLFGDESLNPNILDTNILTFIVNRTSIEIEKKRVSDELIIAKNLLNQSPSCSCLVNKQG 166

Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
           II+       +  G   + +L       + +         + + +  D    + +IT+  
Sbjct: 167 III-------RKIGAFYDRLLGYQIGDNIMKFDKKNEIKQVFDKVCFDNNNIIGEITITK 219

Query: 533 TKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEW-----------------KQEKNKL 571
                     I  K++  S    +   + + DIS+                  ++   +L
Sbjct: 220 E-NGDNYPAEIFAKEIGDSQGNSNGIMIILRDISDQITLKEMNTELQNKSELEQKRNLEL 278

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
             A+  A   +  KS FLA +SHEIRTPL  +IG +E++         N    + A  I 
Sbjct: 279 MEARDQAVAATKIKSQFLATISHEIRTPLNGVIGMAEMLLKT---SPLNTEQHDIAETIF 335

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
            SG L+L I +D+LD SKIE+ ++ L          +      + +  N K I I T F 
Sbjct: 336 GSGELLLSITSDILDFSKIEASRLELEMIEFDFIGCLEGIAKTIGVSINNKPIEIVTLFD 395

Query: 692 NNIP-RILADLRSVKQIALNILSNAIHFTPSGGQI-IISTTHTSNEE--VILRVRDTGVG 747
            +IP R++ D   + QI LN+ +NA+ +T  G  I  +S     +    V + + D+G+G
Sbjct: 396 PDIPHRLVGDPNRLVQIMLNMGTNAVKYTEKGHIIFKVSVLSRKHNWCKVKIGIEDSGIG 455

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF-STPAKGTLIEI 806
           +   + +   +PF QI  S   +  G+GLGL ++  +     G   +  STP  G+L  +
Sbjct: 456 IKEEQRKHLFEPFHQIDASTTRKYGGSGLGLAISSKLAKLMGGSVLLEKSTPGVGSLFSV 515

Query: 807 IF 808
             
Sbjct: 516 TL 517


>gi|229515211|ref|ZP_04404671.1| sensor histidine kinase [Vibrio cholerae TMA 21]
 gi|229347916|gb|EEO12875.1| sensor histidine kinase [Vibrio cholerae TMA 21]
          Length = 736

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 66/240 (27%), Positives = 116/240 (48%), Gaps = 9/240 (3%)

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           L   K  A+  +  KS FLA +SHEIRTP+  ++G ++++      P    +  ++   +
Sbjct: 343 LEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILLKDELTP----KQRQHLTSL 398

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
             SG  ++ ++N++LD SKIE GK  L      L   +    S+      EK +  + + 
Sbjct: 399 YESGEHMMSLLNEILDYSKIEQGKFELDHSAFPLKSIIGSIKSIYSSLCVEKGLKFQLNS 458

Query: 691 A-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT---SNEEVILRVRDTGV 746
              +      D   ++QI  N+LSNA+ FT +G  + I  +         +I++V+DTG+
Sbjct: 459 EITDGRWYYGDKARLRQIIFNLLSNAVKFTEAGF-VAIGLSEESCDEENYLIIKVQDTGI 517

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+    L +  +PF Q  +    R  GTGLGL + K + +   G   + S   +G+  ++
Sbjct: 518 GIAQESLGRIFRPFEQAESHTTRRFGGTGLGLAIVKQIAELMNGTVLVQSEVGQGSCFKV 577


>gi|254446415|ref|ZP_05059891.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198260723|gb|EDY85031.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 780

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 82/351 (23%), Positives = 152/351 (43%), Gaps = 20/351 (5%)

Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI--LSLDLRQTLEKITLGS 532
              ++    L    +  ++    ++ L +    ++   L E+  L+  + +         
Sbjct: 156 ELWSQLYMSLLISSLVLVVALTISILLAKRLLPLITDPLEELANLAHRVSEDRNYSLRAR 215

Query: 533 TKEEKLLSL------RIIIKKLPFSSCYSLTMHDISEWKQEK-NKLSHAKKIAEKESSHK 585
            +    + +       ++          + T  ++ +   ++  KL  A++ AE     K
Sbjct: 216 KRNSDEIGMLVDSINFMLASVRQRDQAINETNRNLEQLVADRTAKLVEARERAETALETK 275

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
           SDFLA +SHE+RTP+ AIIG S V++ +      +         I +S   +LD++ND+L
Sbjct: 276 SDFLATMSHELRTPMNAIIGMSSVLQFEDL----DESRARQIEVIRKSSVNLLDLINDIL 331

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSV 704
           D SKIE+ ++ L      L   + EA+ +        R++   +F   +P  I  D+  V
Sbjct: 332 DFSKIEANRLELENNAFDLVACIEEAMDITAAAKRNNRLVYCVNFDPTLPSHIKGDVTRV 391

Query: 705 KQIALNILSNAIHFTPSGGQIIIST-----THTSNEEVILRVRDTGVGMTNYELEKAMKP 759
           +QI +N+L+NA  FT  G  + +           +E + + VRDTG+G+    L+   + 
Sbjct: 392 RQILVNLLNNAFKFTKKG-TVTMDVFHLPADRRGSERIQISVRDTGIGIPEESLKSIFES 450

Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           F Q   S      GTGLGL ++  +  A  G   + S    G++     P+
Sbjct: 451 FTQANGSTSREFGGTGLGLTISYRLALAMGGDIKVESEYGTGSVFHFTMPI 501


>gi|134094133|ref|YP_001099208.1| putative response regulator receiver [Herminiimonas arsenicoxydans]
 gi|133738036|emb|CAL61081.1| putative two-component sensor protein histidine kinase
           [Herminiimonas arsenicoxydans]
          Length = 560

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 93/422 (22%), Positives = 160/422 (37%), Gaps = 29/422 (6%)

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD-GIA 466
           E    +     E+       +    ++ +             E     ++L A  D  I 
Sbjct: 19  EPGWKILIADDEEEVHQVTAVAMIDVQFKGRKLEFLHAYSAGEA---RAMLAADRDIAII 75

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
           +++   +++  + A  KL  +  E +  +   + L    P         +         +
Sbjct: 76  LLD---VVMEEDDAGLKLVRHIREQMNNRRVRIVLRTGQPGQAPERDVVVDYDINDYKSK 132

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSCYSLT---MHDISEWKQEKN--KLSHAKKIAEKE 581
                         L  II  L              D+ E +  +    LS AK  AE  
Sbjct: 133 TELTRQK------LLTCIISALRSYDDIVALENLSRDL-ERQVLERTHDLSLAKNEAEAA 185

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
           +  KS+FLA +SHEIRTP+  ++G    +         +    EY      S   +L I+
Sbjct: 186 NRAKSEFLAVMSHEIRTPMNGMLG----MMQLALAQASDVEQREYLETAQYSAEALLTIL 241

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-AD 700
           ND+LD SK+ESG +        L +AV   I L+        + +      ++PR+L  D
Sbjct: 242 NDILDFSKLESGHLEFEAVTFDLPKAVDSVIELMSARMQGAALSLNAECDADLPRLLTGD 301

Query: 701 LRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKA 756
           +  ++Q+ LN++ NA+ FT  G  + +             +   V D+G+G+T  E  + 
Sbjct: 302 VGRLRQVLLNLIGNALKFTEQGS-VTLKIERLPASGTQIPLRFTVIDSGIGITAEEQTRL 360

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
            + F Q  +S   R  GTGLGL + K +V+   G   + STP +G+             P
Sbjct: 361 FQSFSQADHSISRRFGGTGLGLSICKKIVEMQRGCIGVESTPGEGSRFWFELTFVPAPEP 420

Query: 817 HD 818
            +
Sbjct: 421 GE 422


>gi|119188929|ref|XP_001245071.1| hypothetical protein CIMG_04512 [Coccidioides immitis RS]
          Length = 1284

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 75/254 (29%), Positives = 127/254 (50%), Gaps = 10/254 (3%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           +S  +    + + A++ AE  +  KS+FLA +SHEIRTP+  IIG +++  +        
Sbjct: 692 VSNLRDSIQRNTQAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDD---LK 748

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
           P   E  N +    N +L I++D+LDISKIE+ +M +   P ++   V  A+  + + AN
Sbjct: 749 PYPREMLNVVHSLANSLLTIIDDILDISKIEANRMVIESIPFTMRGTVFNALKTLAVKAN 808

Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIIS-----TTHTS 733
           EK + +     +++P  ++ D   ++QI LN++ NAI FT  G  ++ IS          
Sbjct: 809 EKFLNLTYQVDSSVPDYVIGDPFRLRQIILNLVGNAIKFTEHGEVKLTISKSTRELCQDE 868

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
                  V DTG+G+   +L+     F Q   S   +  GTGLGL ++K +V+   G  +
Sbjct: 869 EYAFEFSVSDTGIGIEEDKLDMIFDTFQQADGSTTRKFGGTGLGLSISKRLVNLMGGDVW 928

Query: 794 IFSTPAKGTLIEII 807
           + S    G+     
Sbjct: 929 VTSEFGHGSTFHFT 942


>gi|116689328|ref|YP_834951.1| PAS/PAC sensor signal transduction histidine kinase [Burkholderia
           cenocepacia HI2424]
 gi|170732627|ref|YP_001764574.1| PAS/PAC sensor signal transduction histidine kinase [Burkholderia
           cenocepacia MC0-3]
 gi|254245750|ref|ZP_04939071.1| ATP-binding region, ATPase-like [Burkholderia cenocepacia PC184]
 gi|116647417|gb|ABK08058.1| PAS/PAC sensor signal transduction histidine kinase [Burkholderia
           cenocepacia HI2424]
 gi|124870526|gb|EAY62242.1| ATP-binding region, ATPase-like [Burkholderia cenocepacia PC184]
 gi|169815869|gb|ACA90452.1| PAS/PAC sensor signal transduction histidine kinase [Burkholderia
           cenocepacia MC0-3]
          Length = 439

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 78/407 (19%), Positives = 153/407 (37%), Gaps = 35/407 (8%)

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT-----RINKRKMEIEVMQLCSILEATS 462
                   +      + P      G     +           R++E +  +    ++A+ 
Sbjct: 49  HTQRLWRLLDAPVYGEVPSAPGIWGEIYYRLHKLAKQWHAQVRQVEQQHSRFIQAIQASP 108

Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522
           +G+A+++    I   N      FG   +  LR+  T  +         +           
Sbjct: 109 NGVAMLDDHDQIEWCNAIAEVHFGLDAKRDLRQHITNLVRHPDFVRYLNA---------- 158

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES 582
           Q  ++  L     +   ++  +       +   L   DI+E ++                
Sbjct: 159 QHYDETLLMRGMGDSRQNVLAVQVFPYGENRKLLLTQDITELERT--------------D 204

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
           + + DF+A VSHE++TPLT + GF E ++     PL       Y + +++  + +  IV 
Sbjct: 205 AMRRDFVANVSHELKTPLTVLSGFLETMRE---LPLNEEDRARYLDMMEQQASRMRHIVT 261

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702
           DLL ++K+E          + +           Q  +N     I  S    +  +     
Sbjct: 262 DLLVLAKLEGESKPPVDHAIDMRAVFDHLKEDAQTLSNGHH-DIAFSIDETLG-VTGAQT 319

Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
            +     N+++NAI +TP GG+I++S      + V   V D+G G+   +L +  + F +
Sbjct: 320 ELFSAFANLVTNAIRYTPDGGKIVVSWRREGAQGV-FSVTDSGFGIPAADLPRLTERFYR 378

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +  S+     GTGLGL + K ++  +    Y+ S   +G+     FP
Sbjct: 379 VDRSRSRDTGGTGLGLAIVKHVLQRHDAHLYVQSEEGRGSTFTARFP 425


>gi|257059969|ref|YP_003137857.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC
           8802]
 gi|256590135|gb|ACV01022.1| GAF sensor signal transduction histidine kinase [Cyanothece sp. PCC
           8802]
          Length = 576

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 94/519 (18%), Positives = 175/519 (33%), Gaps = 63/519 (12%)

Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD---------RTCIAAS 397
                        ++ +         P+       + +     +                
Sbjct: 62  ELAQKYGVDPQKILQGSPKHFLTPIPPEAYYERLQRVLERRIPEQCHCLFEYVGQSFPLE 121

Query: 398 ARLHTI-QWNRENSLAMTF-IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ-L 454
             +  I     + +  +      E  +    +       P+     +     +I     L
Sbjct: 122 LIISPILPTQGQPTTVLVMGHLLEDNDLALTSHSALPTHPDPYQRLLTNIAQKIRRTLNL 181

Query: 455 CSI----LEATSDG-------IAIINREGIIL-----STNRAVSKLFG---------YPV 489
            +I    +++  +        +  +   G  L         A   L G         Y  
Sbjct: 182 ETIWQQTVDSLGEALHLSRCLMISLAPNGQDLDIKAEYCQSASQSLLGSRFKRTSEPYWE 241

Query: 490 EDILRKP---FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
           + + ++              +     ++          +        +        I + 
Sbjct: 242 QALSQREPVIVEKIAPDAGQARSILIISTFYQNQRNGLIALEQCDRRR--HWRPAEIELI 299

Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
           +       +   H          +L  A   AE+ S  KSDFLA  +HE+RTPL  IIGF
Sbjct: 300 QELADQVGTAIAH-----ATLYQELEQATLAAEEASRLKSDFLASTTHELRTPLNGIIGF 354

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
             ++ +       +    E+     +S   +L+++ND+LDI+KIE+GKM+L    V L E
Sbjct: 355 LRLVLDGMAD--DSQEQQEFLEEAHKSALHLLNLINDILDIAKIEAGKMDLEVGSVELAE 412

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRI--LADLRSVKQIALNILSNAIHFTPSGGQ 724
                 +     A  KR+   + +   +  I    + + + Q+ LN++SNAI FT  GG 
Sbjct: 413 LFEAIDNFTLPQAQRKRLNYSSKYPPTLTPIVLYGNYQRLLQVMLNLVSNAIKFTHDGG- 471

Query: 725 IIISTTHTSN----------EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           I I+                  + +RV DTG+G+   +  K  + F Q+  S      GT
Sbjct: 472 IDITAEIVKKKLYWRDREFPGMIKVRVSDTGIGVALEKQAKLFEKFVQVDGSHSKAYGGT 531

Query: 775 GLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFPLYD 812
           GLGL +++ +V+A  G+   +S     G+ +    PL  
Sbjct: 532 GLGLAISQKLVEAMGGQVEFYSMGEGLGSTVTFTVPLEQ 570


>gi|17231597|ref|NP_488145.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120]
 gi|17133240|dbj|BAB75804.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120]
          Length = 550

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 80/263 (30%), Positives = 133/263 (50%), Gaps = 6/263 (2%)

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
                +   K    ++  A K A+  +  KS FLA  SHE+R PL  II    ++K+   
Sbjct: 220 AIDQMVDRLKVWSEEIETAWKDAKSANQVKSQFLATTSHELRNPLNIIINCVRLVKDGLC 279

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
                   IE+    D +   +L I+N+LLDISKIE+GK+++  +P+ L + + E I+L 
Sbjct: 280 D--NREEEIEFLQRADETAIHLLGIINELLDISKIEAGKLSVVSQPLDLRQTLLEVINLQ 337

Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQ---IIISTTHT 732
            +   +K + ++T+       + AD   +KQ+ +NI+ NA  FT  GG      I T   
Sbjct: 338 SVNVQQKGLQLKTNLGTEPIPVKADAAKLKQVLINIIGNATKFTDEGGISIATTIQTRIE 397

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
              +V++ + DTG+G+   +  K  +PF  +  S   + EGTGLGL +++ +++   G  
Sbjct: 398 GKSQVMVSITDTGLGIEPAQQHKLFRPFVMVNGSTTRKFEGTGLGLAISRNLIELMGGTI 457

Query: 793 YIFST-PAKGTLIEIIFPLYDTS 814
            + S    +GT + I  PL D S
Sbjct: 458 TLESAGINQGTTVNITLPLIDIS 480


>gi|241762807|ref|ZP_04760871.1| histidine kinase [Acidovorax delafieldii 2AN]
 gi|241368226|gb|EER62418.1| histidine kinase [Acidovorax delafieldii 2AN]
          Length = 844

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 102/404 (25%), Positives = 178/404 (44%), Gaps = 56/404 (13%)

Query: 456 SILEATSDG--IAI---INREGIILSTNRAVSKLFGYPVEDILRKPFT------VFLEQN 504
           ++L +  D   + +   I+    I+    A+   F      IL +  +        +   
Sbjct: 172 TLLASMEDALPVIMAGDIDASAKIVVA--AIVWTFSLIALAILWRRRSHSVLDLWLMVVM 229

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564
              + +  L  +L+       +             +  ++I  L  +      + D  E 
Sbjct: 230 CAWLFDSALAAVLNHGR---YDLGWYAGRIYGLFAASFVLIVLLLENGKLYARLADSHER 286

Query: 565 KQEKNK---------------LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
           ++ K K               L+   +  ++ S  KSDFLA +SHE+RTPL AIIGFSEV
Sbjct: 287 ERSKTKDLQQLTVQLESVNNLLAEKNQQLQEVSQLKSDFLANMSHELRTPLNAIIGFSEV 346

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
           +K+   G +  P+  E+ + I  SG  +L ++ND+LD+SKIE+GKM L  +   +D  + 
Sbjct: 347 LKDGLVGEIT-PKQHEFVSDIFASGQHLLSLINDILDLSKIEAGKMTLDLDTQDVDAMLR 405

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
            ++S+V+  A+   IL++   A  +   L D R  KQI  N+LSNA+ F+ + G++ +  
Sbjct: 406 NSLSIVKEKASAHAILLQFDVAEPLGMALLDARKTKQIVFNLLSNAVKFSANNGKVTLQA 465

Query: 730 THTSN------------------------EEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
                                        + + + V DTG+G++  ++ +  + F Q+ +
Sbjct: 466 RKVQRAAIETWATQQPTSLRMPLPPSAFADFLEIAVVDTGLGISAADVPRLFQAFSQLDS 525

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           S     EGTGLGL L   +V  + G   + STP  G+   +  P
Sbjct: 526 SLSRVSEGTGLGLALVLKLVQLHGGTVALASTPGHGSTFTVWLP 569


>gi|237808385|ref|YP_002892825.1| histidine kinase [Tolumonas auensis DSM 9187]
 gi|237500646|gb|ACQ93239.1| histidine kinase [Tolumonas auensis DSM 9187]
          Length = 1131

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 76/250 (30%), Positives = 141/250 (56%), Gaps = 6/250 (2%)

Query: 559 HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPL 618
            +IS  ++   KL  AKK AE  ++ KS +LA +SHE+RTPL  ++G+++++ + R    
Sbjct: 650 QEISAHEKTSRKLEQAKKSAETANNAKSRYLAGLSHELRTPLNVLLGYAQLLSDDR---K 706

Query: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLY 678
            + +  EYA+ + R+G  + D++  LL+ISKIE+G++ L     +L   ++E   +  + 
Sbjct: 707 LDHQTREYAHILRRNGKHLSDLLEGLLEISKIEAGRLELQRVEFNLATMLNELAEMFAME 766

Query: 679 ANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737
           A++K +        N+P  I  D + ++QI +N+L+NAI +T  G ++I   T+  N+  
Sbjct: 767 ASQKGLEFEYLPCVNLPVYIATDKQRLRQILINLLNNAIKYTREG-KVIFRVTYR-NQVA 824

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
              V+DTG+G++ +++++   PF +I        +GTGLGL ++ A+ +   G     S 
Sbjct: 825 RFSVQDTGIGLSEHDIQQIFNPFERIQTHNTRAIQGTGLGLTISHALANLMGGDISCQSQ 884

Query: 798 PAKGTLIEII 807
           P  G+   + 
Sbjct: 885 PDVGSNFTLT 894


>gi|172036382|ref|YP_001802883.1| two-component sensor histidine kinase [Cyanothece sp. ATCC 51142]
 gi|171697836|gb|ACB50817.1| two-component sensor histidine kinase [Cyanothece sp. ATCC 51142]
          Length = 569

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 92/465 (19%), Positives = 169/465 (36%), Gaps = 52/465 (11%)

Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450
                    +  I         +  +     +     +  + +       +    K+  +
Sbjct: 104 GQSFPLELVISPIFKQHGQGTTVLVMGHRLPDNDLSVITNSALPTHPDPYQKLLTKIARK 163

Query: 451 VMQ---LCSI----LEATSDG-------IAIINREGIILSTNRAVSK-----LFGYPVED 491
           + +   L +I    +++  D        +  I      L       +       G     
Sbjct: 164 IRRTLNLETIWQQTVDSLGDALQVSRCLMVAIGPNQDYLEVKAEYRQPCCTSALG-NRLS 222

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS------------TKEEKLL 539
              +P+          V+  +L +  S  ++  L   T                +     
Sbjct: 223 PEGEPWWQQALNQREPVIFEHLVQ-DSHQIQSILIISTFYQNQRNGLIYLEQCDRSRYWC 281

Query: 540 SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
              I + +       +   H          +L  A   AE+ S  KSDFLA  +HE+RTP
Sbjct: 282 PAEIELIQELADQVGTAIAH-----ATLYQELEQATLAAEEASRLKSDFLASTTHELRTP 336

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  IIGF ++I +            E+     +S   +L+++ND+LDI+KIE+GKM+L  
Sbjct: 337 LNGIIGFLKLILDGMAD--DAQEQQEFLEEAHKSALHLLNLINDILDIAKIEAGKMDLEL 394

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR--ILADLRSVKQIALNILSNAIH 717
             V L E      +     A  K +  R+   + +    +  + + + Q+ LN++SNAI 
Sbjct: 395 GSVELAELFQAVDNFTLPQAQRKHLAFRSKLPSTLTPIVVYGNYQRLLQVMLNLVSNAIK 454

Query: 718 FTPSGGQI----IISTTHTSNEE-----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
           FT  G  +    I+        +     V + V DTG+G++  +  K  + F Q+  S  
Sbjct: 455 FTHEGSIVVNAEIVKKKIDHQHQEFPGLVKVSVTDTGIGVSLDKQAKLFEKFVQVDGSHT 514

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFS-TPAKGTLIEIIFPLYD 812
               GTGLGL +++ ++ A  G+   +S     G+ +    PL  
Sbjct: 515 KAYGGTGLGLAISQKLIQAMGGQVEFYSMGEGLGSTVTFTVPLGQ 559


>gi|304322209|ref|YP_003855852.1| two-component hybrid sensor and regulator [Parvularcula bermudensis
           HTCC2503]
 gi|303301111|gb|ADM10710.1| two-component hybrid sensor and regulator [Parvularcula bermudensis
           HTCC2503]
          Length = 782

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 84/302 (27%), Positives = 133/302 (44%), Gaps = 21/302 (6%)

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTM---------HDISEWKQEKNKLSHAKKI 577
           +  + S +E +  S R+             +           D    ++    L  A+  
Sbjct: 195 RTIIQSIRETRDYSARVETVPDKDFGRLIDSFNAMLAEIENRD-ERLERVVGDLVMARDA 253

Query: 578 AEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY-------I 630
           A+  +  KS FLA +SHE+RTPL AII ++E+I        G+    E           I
Sbjct: 254 ADTANKSKSQFLANMSHELRTPLNAIINYAEIIIEDLEDVKGDEASTESLETASSDLAKI 313

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
             +G  +L ++N +LD+SKIE+G+M +      L   + E    V+  A +    +    
Sbjct: 314 KSAGIHLLTLINGILDLSKIEAGRMEIDAYAFDLKMTLREVADTVRPAAEQNGNQLVMRV 373

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGG---QIIISTTHTSNEEVILRVRDTGVG 747
            +++  I+ D   +KQ  LN+LSNA  FT  G    +I  S +      V + V DTG+G
Sbjct: 374 DDHVGTIVTDGMKLKQCILNLLSNACKFTKDGTVSTEIR-SISVKDVPSVEIVVADTGIG 432

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           M  +++E   + F Q   S   +  GTGLGL + K MV+   G   + S    G+   II
Sbjct: 433 MDAHQIESLFEAFVQADASTTRQYGGTGLGLAITKRMVELLGGTIRVESELGTGSRFIII 492

Query: 808 FP 809
            P
Sbjct: 493 VP 494


>gi|115375839|ref|ZP_01463090.1| sensor histidine kinase/response regulator [Stigmatella aurantiaca
           DW4/3-1]
 gi|310820280|ref|YP_003952638.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|115367149|gb|EAU66133.1| sensor histidine kinase/response regulator [Stigmatella aurantiaca
           DW4/3-1]
 gi|309393352|gb|ADO70811.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 1171

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 107/632 (16%), Positives = 210/632 (33%), Gaps = 44/632 (6%)

Query: 191 NDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK 250
              + L      +   L E+++       E  D    +           V +        
Sbjct: 111 KHLQELLSDNPLQQRRLVEVERIIVGKMGELNDTIKLRQAGKSEAALALVRTDKGKVLMD 170

Query: 251 DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS 310
                 E+         S    E       +          L      +    S      
Sbjct: 171 RIRGTIEEMEREERGLLSTRNLELQQAATNSLLITWAGSLLLLVLIGAAGYMTSRDFRTR 230

Query: 311 LSAYFDE-------GENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIA 363
               + +       G     + + +       +  G   Y N     +        +   
Sbjct: 231 SIEAWLQAGQASLGGRMQGDQRLTQLGENVLQFLTG---YLNAQVAAIY-------LAEP 280

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
            G         L      +   +   +     A             +  ++         
Sbjct: 281 TGTFRRFAGYALPPALEGQTETIRPGEGLLGQAIREQRVFHLKDVPTDYLSISTSLSRGT 340

Query: 424 FPE----NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR 479
                      +G     V+          ++  L  + E+   GIA+ +          
Sbjct: 341 PRHLLVVPARVDGGVNAVVELGFIHAVHPSDLEFLQRVSESI--GIAVRSSHDR-----T 393

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
            + +L     E+  R+   +  +Q    V N  + E   +     +      +       
Sbjct: 394 RLEQLL----EETQRQTEELQAQQEELRVSNEEIEEQSRVLKESQVRMEAQQAE------ 443

Query: 540 SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
            L     +L   +       D  +    +  L+      E+ S +KS+FLA +SHE+RTP
Sbjct: 444 -LEQTNVQLEEQTQLLAKQKD--DLTNAQGTLAQKASELERTSRYKSEFLANMSHELRTP 500

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L + +  ++++ + + G L +   +++A  I  +GN +L ++ND+LD+S+IE+GK+ +  
Sbjct: 501 LNSSLILAKLLADNKEGNLTSE-QVKFAQTISSAGNDLLALINDILDLSRIEAGKVEVQP 559

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
           E V L   V   +   Q  A EK++    S   ++   +  D +   QI  N+LSNA  F
Sbjct: 560 EVVILRRTVEALLRTFQPVAQEKKLGFSISVQEDVAEKLETDPQRFGQILRNLLSNAFKF 619

Query: 719 TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
           T  G ++ +        +V   VRDTG+G+  ++ E   + F Q   S   +  G+GLGL
Sbjct: 620 TEKG-EVSLRVFPVGPGKVGFAVRDTGIGIAPHQQELIFEAFRQADGSTHRKYGGSGLGL 678

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            +++ +     G+  + S P +G+   +  P+
Sbjct: 679 SISRDLARLLGGEVTVQSQPGEGSTFTLTLPV 710


>gi|90418087|ref|ZP_01225999.1| putative sensor histidine kinase [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90337759|gb|EAS51410.1| putative sensor histidine kinase [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 501

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 95/249 (38%), Positives = 148/249 (59%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I+E +  K     A+  AE+ +  KS FLA +SHE+RTPL AI+GFSEV+ N+  GP+GN
Sbjct: 238 IAELEMAKIMSDEARSRAEEANLAKSRFLATMSHELRTPLNAILGFSEVMSNEILGPIGN 297

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
             Y +Y   I  SG  +L ++N++LD+S++E+G+  L  E V +     + +  V++ A 
Sbjct: 298 ESYKDYIADIHASGQHLLGLINEILDLSRVEAGRYALSEEAVDIVAIARDCLGYVRVKAE 357

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
            K ++I   F  ++P + AD RS++QI LN+LSNA+ FTP GG+I +    T+     L 
Sbjct: 358 AKDLVIGAEFEADLPAMWADERSLRQIILNLLSNAVKFTPRGGEITLRVGWTAGGGQYLA 417

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V+D G G+   E+   +  FGQ   + +   +GTGLGLP+ +A++  + G F + S   +
Sbjct: 418 VKDNGPGIPEEEIPIVLSSFGQGSIAIKSAEQGTGLGLPIVQALMKMHDGSFELRSRLRE 477

Query: 801 GTLIEIIFP 809
           GT    IFP
Sbjct: 478 GTEAIAIFP 486


>gi|116620185|ref|YP_822341.1| integral membrane sensor hybrid histidine kinase [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116223347|gb|ABJ82056.1| integral membrane sensor hybrid histidine kinase [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 630

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 70/256 (27%), Positives = 122/256 (47%), Gaps = 6/256 (2%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I E  +   +L  AK+ AE  +  K+ FLA +SHEIRTP+  ++G   ++ +        
Sbjct: 235 IMERNRVNAELLAAKERAEDAARQKTQFLANMSHEIRTPMNGVMGMISLVLDHELDSQD- 293

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
               E+      +   ++ I+ND+LD+SKIE+GKM        L   + +A+ +    A 
Sbjct: 294 ---REHLLMAQSAAQSLIIILNDILDLSKIEAGKMTFETVDFDLHRLIGDAMGIFSSAAI 350

Query: 681 EKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
            K + +    A + P  +  D   ++QI +N++ NA+ FT +G  + ++     +  V  
Sbjct: 351 AKGLDLGIDLAPDSPRWVRGDPVRLRQILINLVGNAVKFTAAGS-VRLTLAPHLDNLVRF 409

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            VRDTG+G+   ++E   + F Q   S   +  GTGLGL + + +V    G  +  S   
Sbjct: 410 AVRDTGIGVPKDQMEAIFEAFVQADGSHTRQFGGTGLGLAITRRLVALMEGTLWAESQSG 469

Query: 800 KGTLIEIIFPLYDTSH 815
            G+   +  P+   S 
Sbjct: 470 CGSTFFVELPVQPGSA 485


>gi|297191684|ref|ZP_06909082.1| two-component system sensor kinase [Streptomyces pristinaespiralis
            ATCC 25486]
 gi|197721618|gb|EDY65526.1| two-component system sensor kinase [Streptomyces pristinaespiralis
            ATCC 25486]
          Length = 1821

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 71/283 (25%), Positives = 138/283 (48%), Gaps = 26/283 (9%)

Query: 559  HDI----SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
             DI    +E ++ +  L    +       +KS+FLA +SHE+RTPL +++  ++++ +  
Sbjct: 1327 RDIEVKNTEIEEARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNA 1386

Query: 615  FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
             G L  P+ +E+A  I  +G+ +L ++ND+LD+SK+E+GKM++    ++L + V    + 
Sbjct: 1387 AGNLS-PKQVEFAETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVDYVEAT 1445

Query: 675  VQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIII------ 727
             +    EK +      +  +P  +  D + + Q+  N+LSNA+ FT SG   ++      
Sbjct: 1446 FRPLTAEKGLDFSVRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDSGAVELVIRPAGA 1505

Query: 728  --------------STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
                          S      + +   V DTG+G+   ++    + F Q   +   +  G
Sbjct: 1506 DVPQSIREQLLEAGSLRDPDGDLIAFSVTDTGIGIAAGKMRVIFEAFKQADGTTSRKYGG 1565

Query: 774  TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
            TGLGL +++ +     G+ +  S P +G+   +  PL+ +  P
Sbjct: 1566 TGLGLSISREIARLLGGEIHAASEPGRGSTFTLYLPLHPSELP 1608


>gi|332994914|gb|AEF04969.1| ATP-binding region, ATPase-like protein [Alteromonas sp. SN2]
          Length = 891

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 87/415 (20%), Positives = 155/415 (37%), Gaps = 19/415 (4%)

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG 472
           + F   E   +    MP           R     +      L + ++   D   I   +G
Sbjct: 69  LAFCVIEGEEKLCTAMPMEHGRTLVKIARSKPSALAKRYYNLVTAIDKIPDAAIIC-SDG 127

Query: 473 IILSTNRAVSKLFGYPVE-DILRKPFTVFLEQ--NTPSVMNHYLTEI----LSLDLRQTL 525
            I   N     +F +     +   P    L    +  +  + +L  +    L        
Sbjct: 128 KIDLVNEQFQNIFPFCGNKSLNGVPLDSILNDFSDYFAQGDSHLQAVTYRFLRRKFNSKQ 187

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
           E     +  + +    R     L F+      + + S+ K    +L  +   A   S+ K
Sbjct: 188 EMSLSFTAPDGQFYEYRDN---LTFTGGRVGLIINESQIKGLNEQLEISFNEATALSNAK 244

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
           S+F+A +SHEIRTPL  IIG  + +   +    GN    E    + +S   +L ++ND+L
Sbjct: 245 SNFMAAMSHEIRTPLNGIIGLLD-LCEHQEEFKGN----ELLKRVSKSSISLLSLINDVL 299

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSV 704
           D +K ++  + L    V+L     E I+     A ++ + +       I RI+  D   +
Sbjct: 300 DFTKFDANMVQLSPSDVNLRVLCEELINTFYGQAKQQNVELTLFVDPVISRIVSVDELRL 359

Query: 705 KQIALNILSNAIHFTPS-GGQIIISTTHTS-NEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
            Q+  N++SN + F       + +          +   V D G+G+ + ++      F Q
Sbjct: 360 TQVLTNLISNGLKFNQKLNATLRLEVLQDDLTNYIHFNVIDNGIGIESTKVHTIFDRFTQ 419

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
             +       GTGLGL + + +V    G  Y+ S   KG+   +  PL   S P 
Sbjct: 420 ANDDIHKTFGGTGLGLSICQKIVQLMGGGIYVDSELGKGSTFVVQLPLEACSAPE 474


>gi|332533527|ref|ZP_08409390.1| hypothetical tryptophan-rich sensor protein [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332037074|gb|EGI73532.1| hypothetical tryptophan-rich sensor protein [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 815

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 82/268 (30%), Positives = 132/268 (49%), Gaps = 16/268 (5%)

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                 ++E       L+ AKK ++  +  KS FLA +SHEIRTPL A+IGFS + +   
Sbjct: 420 IALTRQVAERTH---SLAQAKKQSDLANQAKSQFLANMSHEIRTPLNAVIGFSSLARETD 476

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                    I Y + I+ +   +L+++ND+LDISKIES K+ +      L   ++   ++
Sbjct: 477 NAST----LIGYLDKINSASKSLLNLINDILDISKIESQKLVIESIAFDLGALITRINNM 532

Query: 675 VQLYANEKRILIRTSFANNIP---RILADLRSVKQIALNILSNAIHFTPSGG-QIIISTT 730
            +  A  K I  + +  + +P     + D   ++QI LN+ SNAI FT  G   + I T 
Sbjct: 533 FEQSAVNKGIEWQVN--SKLPLDTWFIGDPMRIEQILLNLCSNAIKFTSQGSVTLNIETE 590

Query: 731 HTSNEEV--ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
            T+  +V  ++ V DTG+G+   + +K    F Q  +S   +  GTGLGL +AK +    
Sbjct: 591 FTATNKVQLVITVSDTGIGIKPSQHKKLFNAFTQADSSTSRQFGGTGLGLTIAKELSQLM 650

Query: 789 MGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
                + S   KG+       L +T+ P
Sbjct: 651 GADITLKSEVNKGSTFTFSMRL-ETTEP 677


>gi|328952161|ref|YP_004369495.1| multi-sensor hybrid histidine kinase [Desulfobacca acetoxidans DSM
           11109]
 gi|328452485|gb|AEB08314.1| multi-sensor hybrid histidine kinase [Desulfobacca acetoxidans DSM
           11109]
          Length = 978

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 82/391 (20%), Positives = 165/391 (42%), Gaps = 43/391 (10%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           R++E+   +   + E    GI +++  GII S N+ + ++ GY   D   +    F + +
Sbjct: 468 RQIELSERRYREVWENALVGIWMLDELGIIRSVNQRMQEICGY--ADQTGRHMYDFFDPD 525

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS----LTMHD 560
               + H +T+         +++    +++    +++ +        +       +   D
Sbjct: 526 NQKQLQHIITQNREGRA---IQEELEITSRNRGQVAVLMSSVPNIDENGLYLGSDIMFID 582

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           ISE +  + +L  A+K+              ++H+    L A++ ++E         + +
Sbjct: 583 ISEKRSMEKQLHQAQKM-----EAIGTLAGGIAHDFNNVLMAVMAYTEDAMQD----VPD 633

Query: 621 PRYIEY-ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
              + Y      +SG    D+V  +L  S+ +        +P+ L   V+E++ +++   
Sbjct: 634 DSVLRYKLGRALQSGRRAADLVKQILTFSRPQ----KHERQPIRLSPIVTESLKMLRATL 689

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT-PSGGQIIISTTHTS----- 733
               I+I+    +N   IL D   + Q+ LN+ +N+ H     GG + I+  +T      
Sbjct: 690 PS-TIIIQQEVDHNTDAILGDATQMHQVLLNLCTNSAHAMREKGGILKIALKNTHLDEAA 748

Query: 734 ---------NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAM 784
                       V L V+D GVGM     E+  +PF          GEGTG+GL +   +
Sbjct: 749 AAKWQNAAAGSYVQLTVKDNGVGMDRQIQERIFEPFYTTKKP----GEGTGMGLSVVHGI 804

Query: 785 VDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
           V A+ G   + S+P +GT   ++FP+Y +S 
Sbjct: 805 VKAHGGDISLESSPGQGTTFHLLFPIYISSE 835



 Score = 41.6 bits (96), Expect = 0.63,   Method: Composition-based stats.
 Identities = 19/173 (10%), Positives = 49/173 (28%), Gaps = 10/173 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQNTWY 144
            W +D  G ++ +++ + +  G       G  + D  D  +     H I    + +    
Sbjct: 488 IWMLDELGIIRSVNQRMQEICGY--ADQTGRHMYDFFDPDNQKQLQHIITQNREGRAIQE 545

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
                    G    V + ++++P    N     + G  I+ ++  +           +K 
Sbjct: 546 ELEITSRNRG---QVAVLMSSVPNIDENGL---YLGSDIMFIDISEKRSMEKQLHQAQKM 599

Query: 205 SHLHEIKKGHS-SVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKT 256
             +  +  G +         + +           + V       A +      
Sbjct: 600 EAIGTLAGGIAHDFNNVLMAVMAYTEDAMQDVPDDSVLRYKLGRALQSGRRAA 652


>gi|327535268|gb|AEA94102.1| sensor histidine kinase [Enterococcus faecalis OG1RF]
          Length = 591

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 73/364 (20%), Positives = 160/364 (43%), Gaps = 32/364 (8%)

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
            Q   +L+    G+ II+ +G +   N  + ++ G        K       +        
Sbjct: 250 EQFHELLDELMIGVFIIDTQGRLRLLNPKMQEMLGLSA-----KNMQSNYLEVIQDADLI 304

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY--SLTMHDISEWKQEKN 569
           +L   +  +     ++IT+        L L +       ++ Y      +D++  +Q + 
Sbjct: 305 HLIHQVVAEKNSLHQEITVTQGPTPLRLDLSLRYLDDQSANDYQVLGIAYDLTRVRQLE- 363

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE-YAN 628
                          + DF++ VSHE++TP+T+++GF+E + +   G   +P+ ++ + +
Sbjct: 364 -------------KMQKDFVSNVSHELKTPVTSLLGFTETLID---GAKEDPKVLDQFLH 407

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            + +    +  ++ ++L++S+  S  +    + ++L++ ++E +   Q     K++    
Sbjct: 408 IMQKDAQRLQQLIQEILELSR-GSATIPYAEQEITLEKFITEILGSYQQQLAAKQLK--- 463

Query: 689 SFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
           +  + +P             I  N++ NAI ++   GQI IS     N+++ L V+DTG+
Sbjct: 464 TVVHGLPESQFFTKYELFYPIVKNLIENAIQYSQENGQITISYAIE-NQQLRLSVQDTGI 522

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G++  + E+  + F ++  ++     GTGLGL + +   +   GK  I S    GT   I
Sbjct: 523 GISQKDQERIFERFYRVDKARSRHSGGTGLGLAIVQNYTELLGGKIAIDSHLGLGTTFTI 582

Query: 807 IFPL 810
             PL
Sbjct: 583 TLPL 586


>gi|312951634|ref|ZP_07770529.1| PAS domain S-box [Enterococcus faecalis TX0102]
 gi|310630351|gb|EFQ13634.1| PAS domain S-box [Enterococcus faecalis TX0102]
 gi|315152345|gb|EFT96361.1| PAS domain S-box [Enterococcus faecalis TX0031]
 gi|315158212|gb|EFU02229.1| PAS domain S-box [Enterococcus faecalis TX0312]
 gi|323480863|gb|ADX80302.1| two-component sensor histidine kinase, PhoK [Enterococcus faecalis
           62]
          Length = 591

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 73/364 (20%), Positives = 160/364 (43%), Gaps = 32/364 (8%)

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
            Q   +L+    G+ II+ +G +   N  + ++ G        K       +        
Sbjct: 250 EQFHELLDELMIGVFIIDTQGRLRLLNPKMQEMLGLSA-----KNMQSNYLEVIQDADLI 304

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY--SLTMHDISEWKQEKN 569
           +L   +  +     ++IT+        L L +       ++ Y      +D++  +Q + 
Sbjct: 305 HLIHQVVAEKNSLHQEITVTQGPTPLRLDLSLRYLDDQSANDYQVLGIAYDLTRVRQLE- 363

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE-YAN 628
                          + DF++ VSHE++TP+T+++GF+E + +   G   +P+ ++ + +
Sbjct: 364 -------------KMQKDFVSNVSHELKTPVTSLLGFTETLID---GAKEDPKVLDQFLH 407

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            + +    +  ++ ++L++S+  S  +    + ++L++ ++E +   Q     K++    
Sbjct: 408 IMQKDAQRLQQLIQEILELSR-GSATIPYAEQEITLEKFITEILGSYQQQLAAKQLK--- 463

Query: 689 SFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
           +  + +P             I  N++ NAI ++   GQI IS     N+++ L V+DTG+
Sbjct: 464 TVVHGLPESQFFTKYELFYPIVKNLIENAIQYSQKNGQITISYAIE-NQQLRLSVQDTGI 522

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G++  + E+  + F ++  ++     GTGLGL + +   +   GK  I S    GT   I
Sbjct: 523 GISQKDQERIFERFYRVDKARSRHSGGTGLGLAIVQNYTELLGGKIAIDSHLGLGTTFTI 582

Query: 807 IFPL 810
             PL
Sbjct: 583 TLPL 586


>gi|291523332|emb|CBK81625.1| Signal transduction histidine kinase [Coprococcus catus GD/7]
          Length = 672

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 69/326 (21%), Positives = 146/326 (44%), Gaps = 16/326 (4%)

Query: 497 FTVFLEQNTPSVMNHYLT-EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555
               + +        +   E ++  L       +    K+       ++ +    +   +
Sbjct: 202 IESIIAEPFVQKYIDFFDIETMAARLHNKESMSSEFKKKDGSWFLSMVVPQSYDNNGNVT 261

Query: 556 LTM---HDISEWK----QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
             +    D+++ K    +++ +L  AK  AE  +  KS FL  +SH+IRTP+ AIIG++E
Sbjct: 262 SVLFANRDVTDEKLRELKQEEELREAKLKAECANKAKSSFLYNMSHDIRTPMNAIIGYAE 321

Query: 609 VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAV 668
            + ++        +   Y   I   G  +L ++ ++LD+++IE+ K+ +     ++ E  
Sbjct: 322 -LASRHLQE--TDKLGRYLEEIQICGKELLSMLGNVLDLARIENNKVEIECTVSNVHECF 378

Query: 669 SEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI--- 725
              + + Q  A  K   +  +     P +  D   + ++ LNI+SNAI +T +GG+I   
Sbjct: 379 ENCVIMFQQQAESKNQTLSLTEQIMYPYVYMDAPHLSEVCLNIISNAIKYTNTGGRISCN 438

Query: 726 IISTTHTSNEEV--ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
           ++  +    +    I+ + D G+GM+    ++  + F +  N+     EG+G+G+ + K 
Sbjct: 439 VVQKSCEKEDWCNMIISITDNGIGMSEEFQKRIFETFERERNTTSSHIEGSGIGMGITKK 498

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIFP 809
           +V+   G   + S   KG+   +  P
Sbjct: 499 LVELMDGTIEVKSKQGKGSTFTVTIP 524


>gi|254471778|ref|ZP_05085179.1| phosphate regulon sensor protein PhoR [Pseudovibrio sp. JE062]
 gi|211958980|gb|EEA94179.1| phosphate regulon sensor protein PhoR [Pseudovibrio sp. JE062]
          Length = 455

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 77/450 (17%), Positives = 166/450 (36%), Gaps = 36/450 (8%)

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
           L+   +         +L  +       S       W    + A+ FI             
Sbjct: 21  LNRQAIYRKTVDVRWILLAAAGIFAVFSVAFQVPVWASFFAYALIFILVIGG-------G 73

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQ-LCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
                     + +++++    V + + S + A  D   +++  G     N A  + FG  
Sbjct: 74  MKSRTKVKAPSGVSRKEASEIVDRGMKSAVNALPDPCFVVDYRGTTQYVNLAAQRRFG-- 131

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL-RIIIKK 547
               +  P +  +   +       ++   S ++    EK+ +    E  +  L  +    
Sbjct: 132 -TIAVGDPLSFRIRAPSLLEALDRVSNGGSTEVIDWTEKVPMELWLEAHIAPLWSVSSGN 190

Query: 548 LPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
           L           + + D++E ++ +                ++DF+A  SHE+RTPL ++
Sbjct: 191 LAVPRGRPGLILVVIRDLTEARRLE--------------RMRADFVANASHELRTPLASL 236

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
            GF E ++    G        ++   +      +  +++DLL +S+IE          V 
Sbjct: 237 TGFIETLQGPAKG--DPKAQDQFLGIMLDQAERMRRLIDDLLSLSRIEMKVHVQPETLVD 294

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
           L   +  ++  +   A E  + +  +  +    I  +   + Q+  N++ NA+ +  SGG
Sbjct: 295 LGLIMRHSVESLLPVAKENGVELNVTVPDEPAEIRGENDELVQVFNNLVENALKYGSSGG 354

Query: 724 QIIISTTHTSNE----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLP 779
           ++ ++     +       I  VRD G G+    L +  + F ++      + +GTGLGL 
Sbjct: 355 RVDVTCRPDPDSTETPHWIAEVRDYGPGIDPEHLPRLTERFYRVDVVTSRQMKGTGLGLA 414

Query: 780 LAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           + K ++  +  +  I S P +G    +  P
Sbjct: 415 IVKHILTRHRARLEIESKPDEGACFRVFIP 444


>gi|160934183|ref|ZP_02081570.1| hypothetical protein CLOLEP_03051 [Clostridium leptum DSM 753]
 gi|156866856|gb|EDO60228.1| hypothetical protein CLOLEP_03051 [Clostridium leptum DSM 753]
          Length = 1281

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 70/259 (27%), Positives = 115/259 (44%), Gaps = 14/259 (5%)

Query: 563  EWKQEKNKLSHA------KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
              ++   +L+        K  A+  S  K+ FL+R+SHEIRTP+ AI G + + K     
Sbjct: 877  AQRKTLQELTQIISTFVAKAHADAVSLAKTQFLSRMSHEIRTPMNAIAGMTTIAKTSLD- 935

Query: 617  PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
                 + ++  N I+RS   +L ++ND+L++S+IESGK+ +  E V +     +   +  
Sbjct: 936  --HREKVLDCLNKIERSNQYLLGLINDILEVSRIESGKIEISPEWVDMVTVERQLNEMFA 993

Query: 677  LYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT--- 732
              A  K I +          +   D     QI +N++ NAI FT  GG +I         
Sbjct: 994  SQAKAKNITLLFQRQYEEKYVFYLDTLRFNQIFINLIGNAIKFTRPGGTVIGRARLESFE 1053

Query: 733  -SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
                 +   + DTG+G+    +E+    F Q          GTGLGL ++  +V    GK
Sbjct: 1054 KDIAYIRFSIEDTGIGIAPEAIERIFDSFEQGSAKTAQEYGGTGLGLTISSHLVQLMGGK 1113

Query: 792  FYIFSTPAKGTLIEIIFPL 810
              + S   +G+      PL
Sbjct: 1114 LEVKSRLGEGSEFYFTLPL 1132



 Score = 68.5 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 38/269 (14%), Positives = 82/269 (30%), Gaps = 25/269 (9%)

Query: 343 YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHT 402
           Y N + L    Y+  +  +  G L      P          +     +    A   R+  
Sbjct: 183 YINQNMLDYLGYEYGEFEKATGNLIVNCIDPGDW-AQMEHIIDTAMKENKEYAVRYRM-- 239

Query: 403 IQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE-------VMQLC 455
            +    + + ++ I  +  ++    +   G+  +  D  + KR++E E         +  
Sbjct: 240 -RKRDGSYIWVSDIGKKSWDEKGVPI-CIGVVRDITDEVVMKRRLEQESLQRQRQAEEYS 297

Query: 456 SILEATSDGIAII--NREGIILS--TNRAVSKLFGYPVEDILRK---PFTVFLEQNTPSV 508
            I  +   GI     +R+G +     N    ++FGY  E+   K     +  + +   + 
Sbjct: 298 HIFNSVFCGIVQYRMDRQGGVKFEKANLEAIRIFGYTPEEFWTKENWDLSNLIVEEDRTK 357

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII--IKKLPFSSCYSL--TMHDISEW 564
                  +      Q  +       K    L +     + ++  S    +     DI + 
Sbjct: 358 TLKAALSLEKPG--QVSQFEYRLRQKNGAPLWVIGTAEVIQISSSEGVLIQSVFLDIQKQ 415

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVS 593
           K  + K      + E  +      L   S
Sbjct: 416 KMMELKNKELLTLNEGNNELLRLALNNTS 444



 Score = 48.5 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/120 (10%), Positives = 37/120 (30%), Gaps = 12/120 (10%)

Query: 474 ILSTNRAVSKLFGYPVED---ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530
           +   N+ +    GY   +            ++    + M H +   +  +          
Sbjct: 181 VYYINQNMLDYLGYEYGEFEKATGNLIVNCIDPGDWAQMEHIIDTAMKENKE--YAVRYR 238

Query: 531 GSTKEEKLLSLRIIIKKLPFSSCY---SLTMHDISEW----KQEKNKLSHAKKIAEKESS 583
              ++   + +  I KK             + DI++     ++ + +    ++ AE+ S 
Sbjct: 239 MRKRDGSYIWVSDIGKKSWDEKGVPICIGVVRDITDEVVMKRRLEQESLQRQRQAEEYSH 298


>gi|157960115|ref|YP_001500149.1| histidine kinase [Shewanella pealeana ATCC 700345]
 gi|157845115|gb|ABV85614.1| histidine kinase [Shewanella pealeana ATCC 700345]
          Length = 885

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 80/251 (31%), Positives = 139/251 (55%), Gaps = 7/251 (2%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I+E      K+  AK  AEK +  KS FLA +SHEIRTPL  IIG S+++ + +   + N
Sbjct: 359 INERHLNDKKILRAKLEAEKANQAKSSFLANMSHEIRTPLNGIIGMSDIMADTKLTAIQN 418

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
               EY   I+ S   +L ++ND+LD+SKIESG +++      + E V + ++++     
Sbjct: 419 ----EYLQTIETSSQTLLLLINDILDLSKIESGNLSIINTDTDISEVVYDTLTMILAKVT 474

Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNE-EV 737
           EK + +     ++ P  I  D   ++Q+ +N+LSNA+ FT  GG ++++S+ +T++  ++
Sbjct: 475 EKSLTLAVEIDSDTPYLISLDEHRMRQVLMNLLSNAVKFTHEGGIRVVVSSKNTADYCDM 534

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
           I+ + D+G+G+   + +    PF Q  ++      GTGLGL + K +V+   G+  I S 
Sbjct: 535 IISIYDSGIGIAKEKQQYIFSPFTQEDDTTTREFGGTGLGLAICKQLVELMGGEISINSV 594

Query: 798 PAKGTLIEIIF 808
             +G    I  
Sbjct: 595 KGQGCCFSIKL 605


>gi|262383009|ref|ZP_06076146.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_1_33B]
 gi|262295887|gb|EEY83818.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_1_33B]
          Length = 1354

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 76/290 (26%), Positives = 119/290 (41%), Gaps = 11/290 (3%)

Query: 536  EKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
               ++L III  L         +  I + K E+ K     +   +    K  F   VSHE
Sbjct: 790  GWAIALYIIIGLLFAYGIMWFILR-IQQKKMEQEKEKAIVRKQHEVDEMKLRFFTNVSHE 848

Query: 596  IRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKM 655
             RTPLT I+   E +         N    +    I R+ + +L +VN LLD  KI+    
Sbjct: 849  FRTPLTLILTPLEKLMKTE----ENAETKQILRLIYRNADRLLKLVNQLLDFRKIDVQGD 904

Query: 656  NLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNA 715
             L      +   V +     +  + +K I    S       +  D   V +I  N+LSNA
Sbjct: 905  TLVLSTGDIVPFVRDVAYSFKELSEQKHIRFSFSSVFTSLPMRFDTDKVFKIVSNLLSNA 964

Query: 716  IHFTPSGGQIIISTTH----TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIR- 770
              FTP GG I ++ +         ++++ V D+G+G+   + E     F Q+ +S +   
Sbjct: 965  FKFTPEGGMITVTLSLLPDKEGRNKLLIEVSDSGIGIPADKQEAIFDRFYQVSSSDKGNP 1024

Query: 771  GEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDCI 820
              GTG+GL L +  V  + G   I S P  G+   +  P+    H  D I
Sbjct: 1025 VMGTGIGLHLCREFVRMHQGSIAIKSQPGVGSTFTVTLPVIPQDH-QDII 1073


>gi|168177696|ref|ZP_02612360.1| sensor histidine kinase [Clostridium botulinum NCTC 2916]
 gi|182671026|gb|EDT83000.1| sensor histidine kinase [Clostridium botulinum NCTC 2916]
          Length = 464

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 69/240 (28%), Positives = 123/240 (51%), Gaps = 8/240 (3%)

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           L++      K+   K++F++ VSHE+RTPLT+I G++  +       +      +    I
Sbjct: 230 LNYMADEIVKKDQLKNEFISSVSHELRTPLTSIKGWAITL---NSNEVDKEILKDGLKII 286

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
           +     +  +V +LLD SK  SGKM L+ E +++ E +      ++ YA   RI  + + 
Sbjct: 287 EDESERLSGMVEELLDFSKFVSGKMKLNKEEINICEIIDTVRKQLEPYAYRNRINFKATC 346

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
            N +P I  D   +KQ+ +N+L NA  FTP GG + ++T +     + + V+DTGVG++ 
Sbjct: 347 INKLPNIYGDRNRIKQVLINLLDNAFKFTPEGGLVELNTKYEEE-YITIVVKDTGVGISK 405

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            +L +  + F +  + +       G+GL +   ++  + G  +I S   KGT I I  P+
Sbjct: 406 EDLPRVKEKFYKGNSGKSKN----GIGLSICDEIIKLHNGVLHIESEENKGTTISIKLPM 461


>gi|83815044|ref|YP_444341.1| hypothetical protein SRU_0190 [Salinibacter ruber DSM 13855]
 gi|83756438|gb|ABC44551.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
            protein [Salinibacter ruber DSM 13855]
          Length = 1203

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 125/803 (15%), Positives = 247/803 (30%), Gaps = 118/803 (14%)

Query: 104  KTIGNYAFKMIG---------MRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTTLWPIE 153
            + IG  A   +G          R  +     H +     + + ++ ++ W  +      +
Sbjct: 412  EFIGKEAEAFLGLSSSPEEFYRRFAERVPEGHREEFLQSVEEAVEGRSAWRHEFPFERPD 471

Query: 154  GTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLD-------KKFSH 206
            G    V +  +A P    + E      +G +             +          ++   
Sbjct: 472  GE--RVWLLGSAEPNSESSPEGEEVVFWGTLADITGRKRREQELRESRQELRREKRRAES 529

Query: 207  LHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
            + E          E+  I    S        R   ++        + D   + E      
Sbjct: 530  ITENVSEGIYRSTEEEGIVYANSAFIEMFGYRDLQELREAGPEALYVDPGRREELIEKEH 589

Query: 264  SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTP 323
             +     E+  +   +   +        ++   +    +       +             
Sbjct: 590  RDGRLHQEEVRYRRKDGTVFVGLLSSQQVEEEEEGKTYFDGAITDITERKEERRRR---K 646

Query: 324  ETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
            +TV +                 N       + K+ D++                     +
Sbjct: 647  QTVQRVTDAIVEVDSEWRFTLVNDRAEEFYE-KAEDNLLGKNFWDVFSQFEGTRFEEVYR 705

Query: 383  PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
             VM  R      A   +                  +   +                + + 
Sbjct: 706  EVMQSR---EPTAIEEQYS------GTGEWFEVQVYPNEDG-----GLAFYFEVVTERKK 751

Query: 443  NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
             +  +     +L S+ EAT+  +     E +    +  + +  GYP   I        + 
Sbjct: 752  REEALRERQEKLESLYEATNHLLQAEGPEDLSARLSSLIRQSLGYPATTIRLARGGKLVP 811

Query: 503  QNTPSVMNHYL-----------------TEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
             + P V+   +                          + L        + +   +  + +
Sbjct: 812  AHVPDVVQERMPGRPSYDIGGDTPAAEAHRSGETRAFEDLSAEFEAMDRGDVRATAYVPM 871

Query: 546  KKLP----------FSSCYSLTMHDIS--------EWKQEKNKLSHAKKIAEKE------ 581
             +                + L + ++         E  + + +L  AKK AE+       
Sbjct: 872  GRYGLISVGSFEAGGIGPFDLRLVEVLGSYAALVLERLKREEELLTAKKEAEQARKESEE 931

Query: 582  ---------------SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR--YI 624
                           S  KS  LA +SHEIRTPLT+IIGF+E++  +  G   +      
Sbjct: 932  ARQEAEEAKEEAEEASRLKSALLANMSHEIRTPLTSIIGFAEMLGREASGLELSEESPLP 991

Query: 625  EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
             YA+ I++SG  +L+ +N +L++SK+++G+M +   P+ L E    A   ++  A EK I
Sbjct: 992  GYASTIEQSGKRLLETLNGVLNLSKLQAGQMEMEAGPIDLPEQARLAAGELRPDAEEKGI 1051

Query: 685  LIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-------- 735
             +          +  AD   V+ +  N+L+NAI +T  GG + + T     +        
Sbjct: 1052 ELELETGGGPAVLAEADEGGVQIVIRNLLANAIKYTDEGG-VTVRTYREDGDSQEDGQAE 1110

Query: 736  ---------EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
                       +L V DTG+GM     E   +PF Q         EGTG+GL + +  V 
Sbjct: 1111 KSDQVRKDSWAVLEVEDTGIGMDPEVAEGLFEPFRQASEGLSREYEGTGIGLAVTREAVA 1170

Query: 787  ANMGKFYIFSTPAKGTLIEIIFP 809
               G   + +   +GT + +  P
Sbjct: 1171 QMGGSIEVDTQKGEGTCMTVRLP 1193



 Score =  112 bits (280), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 56/550 (10%), Positives = 144/550 (26%), Gaps = 72/550 (13%)

Query: 89  IDAHGYLKEISEELPKTI-----GNYAFKMI-GMRLCDVSDILHIDPN-NHIGDLLKRQN 141
           +   G L+  +    K       G    + +        +    ++     +   L    
Sbjct: 248 LSGDGRLRNYNRAAAKLFPALRGGASQEETLQEETPQKGATRRRLEEALPRLARALDGGG 307

Query: 142 TWYGKTTLWPIEGTNLY---------VPIDLAALPIYSRNREFSGFR------GFGIVHV 186
                T   P +   L           P +   L + +   E   +R      G G   +
Sbjct: 308 LGEKVTVKEPEKRRGLKENGRRSGKKPPEEDGMLQVTAGGGETRYYRPVESQAGPGAGRL 367

Query: 187 NRVDNDPRALGKRLDK--KFSHLHEIKKGHSS----------------VEKEKYDIFSQQ 228
             + +    + +R ++  +   + +   G +                  E E +   S  
Sbjct: 368 VVLQDLSERVLRRRERASRLEAISDSMPGLAFEFWAGPGGKRSVEFIGKEAEAFLGLSSS 427

Query: 229 SPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQY 288
               + R   +V     +       ++               E+ D   + L    +   
Sbjct: 428 PEEFYRRFAERVP--EGHREEFLQSVEEAVEGRSAWRHEFPFERPDGERVWLLGSAEPNS 485

Query: 289 FGTLQNNSKESFEYLS--------HRNHPSLSAYFDEGENLTPETVDKCPIPFFV-YSHG 339
             + +      +  L+         +            +       +      +      
Sbjct: 486 ESSPEGEEVVFWGTLADITGRKRREQELRESRQELRREKRRAESITENVSEGIYRSTEEE 545

Query: 340 NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASAR 399
            + YAN +F+ +  Y+ + ++  A G   L   P   +    K       D        R
Sbjct: 546 GIVYANSAFIEMFGYRDLQELREA-GPEALYVDPGRREELIEKE----HRDGRLHQEEVR 600

Query: 400 LHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE 459
               +              +   +       +G   +  + +  +R+ +  V +      
Sbjct: 601 ---YRRKDGTVFVGLLSSQQVEEEEEGKTYFDGAITDITERKEERRRRKQTVQR------ 651

Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL 519
             +D I  ++ E      N    + +    +++L K F     Q   +       E++  
Sbjct: 652 -VTDAIVEVDSEWRFTLVNDRAEEFYEKAEDNLLGKNFWDVFSQFEGTRFEEVYREVMQS 710

Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579
                +E+   G+    +   +++           +     ++E K+ +  L   ++  E
Sbjct: 711 REPTAIEEQYSGT---GEWFEVQVYP---NEDGGLAFYFEVVTERKKREEALRERQEKLE 764

Query: 580 KESSHKSDFL 589
                 +  L
Sbjct: 765 SLYEATNHLL 774



 Score = 68.1 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 41/407 (10%), Positives = 95/407 (23%), Gaps = 54/407 (13%)

Query: 230 PPPHLRMKNKVS-----SLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYT 284
           P PHL +++ V       L+   A     + +E           L        + L    
Sbjct: 140 PFPHLAVEHHVIYWLTSGLSYALAGVGFCMLSEPLRRAQVGGERLAGLFALTALPLGANA 199

Query: 285 KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYA 344
             Q    L N        ++     +L  Y +  E  +   +   P    +   G L   
Sbjct: 200 VGQATHYLLNL-NHEPVGVAAFALGALFVYRERFERTSQAGIQAKP-ALILSGDGRLRNY 257

Query: 345 NPSFLLLTKY---------KSVDDIEIAGGLSTLLDAPKLS------------------D 377
           N +   L               ++    G     L+                        
Sbjct: 258 NRAAAKLFPALRGGASQEETLQEETPQKGATRRRLEEALPRLARALDGGGLGEKVTVKEP 317

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
                     R           +  +      +           +Q      +  +  + 
Sbjct: 318 EKRRGLKENGRRSGKKPPEEDGMLQVTAGGGETRY----YRPVESQAGPGAGRLVVLQDL 373

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAII--NREGI--ILSTNRAVSKLFGYPV-EDI 492
            +  + +R+      +L +I ++             G   +    +      G     + 
Sbjct: 374 SERVLRRRE---RASRLEAISDSMPGLAFEFWAGPGGKRSVEFIGKEAEAFLGLSSSPEE 430

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII------K 546
             + F   + +         + E +                 + + + L           
Sbjct: 431 FYRRFAERVPEGHREEFLQSVEEAVEGRSAWR--HEFPFERPDGERVWLLGSAEPNSESS 488

Query: 547 KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
                  +  T+ DI+  K+ + +L  +++   +E          VS
Sbjct: 489 PEGEEVVFWGTLADITGRKRREQELRESRQELRREKRRAESITENVS 535



 Score = 55.4 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/294 (9%), Positives = 76/294 (25%), Gaps = 26/294 (8%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHI-GDLLKRQNTWYGK 146
            +D+      +++   +        ++G    DV           +  ++++ +     +
Sbjct: 658 EVDSEWRFTLVNDRAEEFYEKAEDNLLGKNFWDVFSQFEGTRFEEVYREVMQSREPTAIE 717

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                  GT  +  + +      + +   + +       V           +   +K   
Sbjct: 718 EQY---SGTGEWFEVQV----YPNEDGGLAFY-----FEVVTERKKREEALRERQEKLES 765

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
           L+E        E  +       S    +R      + T   A    ++      ++    
Sbjct: 766 LYEATNHLLQAEGPEDLSARLSS---LIRQSLGYPATTIRLARGGKLVPAHVPDVVQERM 822

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
              P  +        +  +       ++ S E       R     +AY   G        
Sbjct: 823 PGRPSYDIGGDTPAAEAHRSGETRAFEDLSAEFEAMD--RGDVRATAYVPMGRYGL---- 876

Query: 327 DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
               I    +  G +   +   + +    +   +E       LL A K ++   
Sbjct: 877 ----ISVGSFEAGGIGPFDLRLVEVLGSYAALVLERLKREEELLTAKKEAEQAR 926


>gi|315051696|ref|XP_003175222.1| signal transduction histidine-protein kinase barA [Arthroderma
           gypseum CBS 118893]
 gi|311340537|gb|EFQ99739.1| signal transduction histidine-protein kinase barA [Arthroderma
           gypseum CBS 118893]
          Length = 1321

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 75/265 (28%), Positives = 130/265 (49%), Gaps = 22/265 (8%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           IS  +    + + A++ AE  +  KS+FLA +SHEIRTP+  IIG +++  +        
Sbjct: 703 ISNLRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDD---LK 759

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
           P   E  N +    N +L I++D+LDISKIE+ +M +   P ++   V  A+  + + AN
Sbjct: 760 PYPREMLNVVHSLANSLLTIIDDILDISKIEANRMVIESIPFTMRGTVFNALKTLAVKAN 819

Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTT--------- 730
           EK + +     +++P  ++ D   ++QI LN++ NAI FT  G ++ +            
Sbjct: 820 EKFLNLTYQVDSSVPDYVIGDPFRLRQIILNLVGNAIKFTEHG-EVTLEIKKHEPPPPAE 878

Query: 731 -------HTSNEEV-ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
                     +E      V+DTG+G+   +L+     F Q   S   +  GTGLGL ++K
Sbjct: 879 GEPEREVCADDEYAYEFSVQDTGIGIAKDKLDMIFDTFQQADGSTTRKFGGTGLGLSISK 938

Query: 783 AMVDANMGKFYIFSTPAKGTLIEII 807
            +V+   G  ++ S   +G+     
Sbjct: 939 RLVNLMGGDVWVTSEYGRGSTFHFT 963


>gi|307289242|ref|ZP_07569198.1| PAS domain S-box [Enterococcus faecalis TX0109]
 gi|306499951|gb|EFM69312.1| PAS domain S-box [Enterococcus faecalis TX0109]
 gi|315163856|gb|EFU07873.1| PAS domain S-box [Enterococcus faecalis TX1302]
          Length = 591

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 71/363 (19%), Positives = 155/363 (42%), Gaps = 30/363 (8%)

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
            Q   +L+    G+ II+ +G +   N  + ++ G        K       +        
Sbjct: 250 EQFHELLDELMIGVFIIDTQGRLRLLNPKMQEMLGLSD-----KNMQSNYLEVIQDADLI 304

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY--SLTMHDISEWKQEKN 569
           +L   +  +     ++IT+        L L +       ++ Y      +D++  +Q + 
Sbjct: 305 HLIHQVVAEKNSLHQEITVTQGPTPLRLDLSLRYLDDQSANDYQVLGIAYDLTRVRQLE- 363

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
                          + DF++ VSHE++TP+T+++GF+E + +            ++ + 
Sbjct: 364 -------------KMQKDFVSNVSHELKTPVTSLLGFTETLIDG--AKEDPEVLDQFLHI 408

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           + +    +  ++ ++L++S+  S  +    + ++L++ ++E +   Q     K++    +
Sbjct: 409 MQKDAQRLQQLIQEILELSR-GSATIPYAEQEITLEKFITEILGSYQQQLAAKQLK---T 464

Query: 690 FANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747
             + +P             I  N++ NAI ++   GQI IS     N+++ L V+DTG+G
Sbjct: 465 VVHGLPESQFFTKYELFYPIVKNLIENAIQYSQENGQITISYAIE-NQQLRLSVQDTGIG 523

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           ++  + E+  + F ++  ++     GTGLGL + +   +   GK  I S    GT   I 
Sbjct: 524 ISQKDQERIFERFYRVDKARSRHSGGTGLGLAIVQNYTELLGGKIAIDSHLGLGTTFTIT 583

Query: 808 FPL 810
            PL
Sbjct: 584 LPL 586


>gi|291547320|emb|CBL20428.1| Signal transduction histidine kinase [Ruminococcus sp. SR1/5]
          Length = 551

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 77/398 (19%), Positives = 163/398 (40%), Gaps = 31/398 (7%)

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIIL 475
            P E           + I  +    R+       +  +   I E   +G+ +I+R  ++L
Sbjct: 177 HPEENDAYDEVQPLLSKIGRQSRQIRLQLEAARRQQKEFSIITENMQEGLLVIDRYTMVL 236

Query: 476 STNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
           S N +V KL          K        N        + ++L                 +
Sbjct: 237 SVNSSVGKLLKVKE----IKTGESVYLLNRSEEFRGVVGQVLEGK------HENKILRLD 286

Query: 536 EKLLSLRIIIK-KLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
              + +      +   +    + + D++E  + +                + +F A VSH
Sbjct: 287 GSEIQVIANPVTRENKTEGAVILLVDVTEKVERE--------------QLRREFSANVSH 332

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           E++TPLT+I GF+E++++   G + +     +A  I +    ++ +V D++ IS+++ G 
Sbjct: 333 ELKTPLTSISGFAEIMQD---GFVKDEDVKVFAGRIYKEAQRLIRLVGDVIRISRLDEGG 389

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714
           +   +E + L     +  S +   A ++ + +     + +   +     ++++  N+  N
Sbjct: 390 LPYQWEKLDLYSLTHDIFSTLHEAAEKQEVHMYMEGGSTVLDTV--PTIMEEVLYNVCDN 447

Query: 715 AIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           A+ +   GG++ +       + V + VRDTG+G+   + E+  + F ++  S      GT
Sbjct: 448 AVKYNRRGGEVFVRLK-DGEDAVRVNVRDTGIGIPKEDQERIFERFYRVDKSHSKEIGGT 506

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
           GLGL + K  V    G+ ++ S P +GT I + FP + 
Sbjct: 507 GLGLSIVKHGVKTLNGRLWLNSEPGQGTEILMEFPKHH 544


>gi|262381160|ref|ZP_06074298.1| two-component hybrid sensor kinase/response regulator [Bacteroides
           sp. 2_1_33B]
 gi|262296337|gb|EEY84267.1| two-component hybrid sensor kinase/response regulator [Bacteroides
           sp. 2_1_33B]
          Length = 795

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 76/269 (28%), Positives = 137/269 (50%), Gaps = 12/269 (4%)

Query: 548 LPFSSCYSLTMHDISEWKQEKNK---LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
               +   LT  DI E ++E+ +   L  A ++A+  +  KSDFL+R+SH+IRTP+ AII
Sbjct: 245 DKERNILLLTRTDIMEVREEERQRQLLQDALQVAKSANQAKSDFLSRMSHDIRTPMNAII 304

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           G + +            R ++    I  S  L+L+++N++LD+SK+ESG + L  E   +
Sbjct: 305 GMTTIASMHID---DRERIVDCLKKIMVSSKLLLNLINEVLDMSKVESGHILLTDEEFDM 361

Query: 665 DEAVSEAISLVQLYANEKRILIRTSF-ANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
            E +   I++VQ   ++K    R         +++ D++ ++Q+ LN+LSNAI +TP  G
Sbjct: 362 GELLQSVITMVQTSVSQKFQDFRVHLFQVKHEKLIGDVQRIQQVLLNLLSNAIKYTPDYG 421

Query: 724 QIIISTTHTS-----NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
           +I +                + V D G+G+    L K  +PF +  ++     +GTGLG+
Sbjct: 422 KITLEIREKPIKNGNYGLFEVTVIDNGIGIKPDFLHKVFEPFERAEDATLRNIQGTGLGM 481

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEII 807
            +++ +     G+  + S   KG++    
Sbjct: 482 AISRNIAHMMNGEIQVESEYGKGSVFTFT 510


>gi|54302830|ref|YP_132823.1| hypothetical protein PBPRB1151 [Photobacterium profundum SS9]
 gi|46916254|emb|CAG23023.1| hypothetical protein PBPRB1151 [Photobacterium profundum SS9]
          Length = 578

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 79/251 (31%), Positives = 135/251 (53%), Gaps = 10/251 (3%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           +    +  +  AK+ AEK ++ KS FLA +SHEIRTPL  IIG S ++ +       NP 
Sbjct: 39  DRHFSQANIIKAKEEAEKANAAKSSFLANMSHEIRTPLNGIIGMSGILSDTEL----NPS 94

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             EY   I+ S   +L ++ND+LD+SKIESG + L     +L E V + I++VQ  A+E+
Sbjct: 95  QAEYLQTIETSSQTLLLLINDILDLSKIESGNLVLSPHESNLAEVVYDTITIVQAKASEQ 154

Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----V 737
            + ++      +P  ++ D   ++Q+ +N++SNA+ FT  G  + +S T+T   +    +
Sbjct: 155 GLNLQIQLDPELPTSVMLDEHRLRQVLMNLMSNAVKFTLQGS-VTLSITYTDIGDKKASL 213

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
           +  ++DTG+G+   + ++   PF Q   S   +  GTGLGL + + +V+   G   + S 
Sbjct: 214 LFSIKDTGIGIEKDKQQQVFAPFTQEDGSITRQFGGTGLGLAICRQLVELLGGSIELKSE 273

Query: 798 PAKGTLIEIIF 808
              G+      
Sbjct: 274 KGVGSDFYFSL 284


>gi|288958185|ref|YP_003448526.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
 gi|288910493|dbj|BAI71982.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
          Length = 790

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 84/483 (17%), Positives = 184/483 (38%), Gaps = 29/483 (6%)

Query: 347 SFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN 406
                 +  +   +   G ++        +    +  +     D        R+     +
Sbjct: 181 RTRRPLQRAAGAVLLGLGVVTMHYTGMAAAGMEPVTQLGALTFDGANAD---RVMPASGS 237

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
                  + +           +    +    +D R    +   +  +  +I++   D I 
Sbjct: 238 SHGIALSSSLLAIMTGAGALLLLSLAMLSSLLDRRQQAEQSAEQEARYRAIVDTAVDPIV 297

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT-- 524
           +IN  GI+ S N A  K FGY  ++++ +  ++ + +      + YL        R+   
Sbjct: 298 LINDHGIVESFNHAAEKTFGYRADEVIGRNVSMLMPEPYRGAHDGYLDRYHRTGERRIVG 357

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKN------------- 569
           + +   G  K+     L + + +        Y+  M DI+  K  +              
Sbjct: 358 IGREVEGLRKDGSTFPLDLSVGEWHVGKRRMYTGIMRDITARKAAEEAILRARDEAEAAR 417

Query: 570 -KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
            +   A+  A +    K+ FLA  SH++R PL ++  F+  + ++       P       
Sbjct: 418 IEALQARDDALRADRAKTKFLAAASHDLRQPLQSLFFFAHALSDKLENHPTAP----LLA 473

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            +  S N +  +++ LLD+S++++G +       +L   +       +  A E  + +R 
Sbjct: 474 SMTDSLNGLRVMLDSLLDVSRLDAGVVKPSVTDFALGPLLDRLAEEYRNRAAESGLALR- 532

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748
             A +     +D   +++I  N++ NAI +T  G  I++   H ++  + L V D G+G+
Sbjct: 533 HVATSAWT-RSDPALLERILRNLIENAIRYTERG-DILVGCLHRADG-LRLAVLDQGIGI 589

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
              + +     F Q+ N ++ R +G GLGL + + +         + STP +G+   +  
Sbjct: 590 PADKTQDIFLEFTQLANPERDRRKGLGLGLAIVRRLARLLEHGVTVRSTPGRGSGFFLDL 649

Query: 809 PLY 811
           P+ 
Sbjct: 650 PVA 652



 Score = 50.0 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 49/468 (10%), Positives = 109/468 (23%), Gaps = 49/468 (10%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           I+ HG ++  +    KT G  A ++IG  +  +    +   ++   D   R         
Sbjct: 299 INDHGIVESFNHAAEKTFGYRADEVIGRNVSMLMPEPYRGAHDGYLDRYHRTGERRIVGI 358

Query: 149 LWPIEG---TNLYVPIDLA-ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
              +EG        P+DL+       + R ++G     I+              R   + 
Sbjct: 359 GREVEGLRKDGSTFPLDLSVGEWHVGKRRMYTG-----IMRDITARKAAEEAILRARDEA 413

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL--------TEYYAHKDDVLKT 256
                                ++        ++  + SL         +   H    L  
Sbjct: 414 EAARIEALQARDDALRADRAKTKFLAAASHDLRQPLQSLFFFAHALSDKLENHPTAPLLA 473

Query: 257 EKYPLLTSEESSLPEQEDFHTINLN-------QYTKKQYFGTLQNNSKESFEYLSHRNHP 309
                L      L    D   ++          +        L    +            
Sbjct: 474 SMTDSLNGLRVMLDSLLDVSRLDAGVVKPSVTDFALGPLLDRLAEEYRNRAAESGLALRH 533

Query: 310 SLSAYF-DEGENLTPETVDKC-PIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLS 367
             ++ +      L    +             G++       L       +  ++   G+ 
Sbjct: 534 VATSAWTRSDPALLERILRNLIENAIRYTERGDILVG---CLHRADGLRLAVLDQGIGIP 590

Query: 368 TLLDAPKLSD--NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
                    +    A       +     +A   RL  +  +      +T           
Sbjct: 591 ADKTQDIFLEFTQLANPERDRRKGLGLGLAIVRRLARLLEHG-----VTVRSTPGRGSGF 645

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
                  +            ++                 I +++ + IIL + RA+ + +
Sbjct: 646 FLDLPVAVPRPVPKPARCPAELPDTKG-----------LIVVVDDDTIILLSMRAMLEEW 694

Query: 486 GYPVEDIL--RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLG 531
           GY V   +   +     L       M      +          +   G
Sbjct: 695 GYEVVAAVSADEAIASLLNLGRQPAMIVADYRLREGRTGVEAIRDIYG 742


>gi|282899742|ref|ZP_06307705.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Cylindrospermopsis raciborskii CS-505]
 gi|281195357|gb|EFA70291.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Cylindrospermopsis raciborskii CS-505]
          Length = 407

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 72/247 (29%), Positives = 129/247 (52%), Gaps = 2/247 (0%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E ++++ ++        + S  KS FL+ +SHE+RTP+ AIIGF++++   +F  L +  
Sbjct: 151 ELERQRQQIQLQNLKLLEVSRLKSQFLSTISHELRTPMNAIIGFAQILLRPKFSQLSS-V 209

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             +    I  +   +  ++N++LD SKI+SG++ L  E   L + V+  +  ++     K
Sbjct: 210 QTDMLKRILNNAKDLSMLLNEVLDFSKIDSGRLGLKAEIFDLSKMVNHTVDEIRSLVEAK 269

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           ++ +          +  D   V+QI +N+LSNAI FT  G  + +  T TS   + + +R
Sbjct: 270 KLSLSVEIDLENTLVFNDPVRVRQILINLLSNAIKFTERG-CVWVRVTETSKSRIAISIR 328

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG+G++N + E   + F Q+      +  GTGLGL +  ++V    GK  + S  A G+
Sbjct: 329 DTGIGISNQDCEHIFEAFRQVDQGMSRKYPGTGLGLAIIDSLVKIMGGKIMLESQLAVGS 388

Query: 803 LIEIIFP 809
           L  +  P
Sbjct: 389 LFTVELP 395


>gi|87311190|ref|ZP_01093313.1| sensory transduction histidine kinase [Blastopirellula marina DSM
           3645]
 gi|87286098|gb|EAQ78009.1| sensory transduction histidine kinase [Blastopirellula marina DSM
           3645]
          Length = 543

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 72/250 (28%), Positives = 131/250 (52%), Gaps = 6/250 (2%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           + ++E      A++ A   S  KS+FLA +SHE+RTPLTA++G +EV+  +      +  
Sbjct: 148 QLEKEIVARQLAEQAAHAASQTKSEFLANMSHELRTPLTAVMGLTEVLNTEE----TDQE 203

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             +    I + G+ +L+++ND+LD+SKIE+G++  +       E  +E +  +++ A  K
Sbjct: 204 KRQLLAMIRQGGDHLLNLINDILDLSKIEAGRIENNKIACQPGEIAAEVVDSLRVSAAAK 263

Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVILR 740
            I +  +  +N+P  I A    ++QI  N+  NA+ FT  G   + +      ++ +   
Sbjct: 264 SIELSWTMDDNMPTTIAAAPIRLRQILFNLAGNAVKFTDHGSVTVHLQIDPLDSQLLRFS 323

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V DTG G+    L+   +PF Q+  +   R +G GLGL ++K + +   G   + S P +
Sbjct: 324 VTDTGEGIPPEGLKLLFEPFSQLDGTAARRRDGAGLGLSISKRLAETMGGTIEVESQPGQ 383

Query: 801 GTLIEIIFPL 810
           G+   +  PL
Sbjct: 384 GSTFALRLPL 393


>gi|226287246|gb|EEH42759.1| DRK1 histidine kinase [Paracoccidioides brasiliensis Pb18]
          Length = 1285

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 78/255 (30%), Positives = 130/255 (50%), Gaps = 12/255 (4%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           +S  +    + + A++ AE  +  KS+FLA +SHEIRTP+  IIG +++  +        
Sbjct: 684 VSNLRDSIQRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDD---LK 740

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
           P   E  N +    N +L I++D+LDISKIE+ +M +   P S+  AV  A+  + + AN
Sbjct: 741 PYPREMLNVVHSLANSLLTIIDDILDISKIEANRMVIERIPFSMRGAVFNALKTLAVKAN 800

Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI- 738
           EK + +     ++IP  +  D   ++QI LN++ NAI FT  G ++ ++   +  EE   
Sbjct: 801 EKILNLIYQVDSSIPDFVTGDPFRLRQIILNLVGNAIKFTERG-EVRVTILKSDREECRP 859

Query: 739 ------LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
                   V DTG+G+   +L+     F Q   S   +  GTGLGL ++K +V+   G  
Sbjct: 860 NEYSFEFIVSDTGIGIEEDKLDLIFDTFQQADGSTTRKFGGTGLGLSISKRLVNLMGGDV 919

Query: 793 YIFSTPAKGTLIEII 807
           ++ S    G+     
Sbjct: 920 WVTSEFGHGSKFHFT 934


>gi|95930319|ref|ZP_01313056.1| multi-sensor hybrid histidine kinase [Desulfuromonas acetoxidans
           DSM 684]
 gi|95133571|gb|EAT15233.1| multi-sensor hybrid histidine kinase [Desulfuromonas acetoxidans
           DSM 684]
          Length = 1152

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 63/251 (25%), Positives = 114/251 (45%), Gaps = 3/251 (1%)

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           +  ++   +L        +    K +FLA  SHE+RTPL  IIG +E +     G L   
Sbjct: 425 TTTERLSVELQEKNIALSRMDQLKDEFLANTSHELRTPLAGIIGIAESLLAGSGGQLS-E 483

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
                 + +  S   +  ++ND+LD +++ +  + L+ + V +       +SL+   A  
Sbjct: 484 LARHNLHMVVSSSRRLTSLINDILDFTRLRNRDLPLNLKAVDVKAVADVVLSLLTPLAEA 543

Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
           K++ +       +P   AD   ++QI  N++ NAI F+  G   I+ T    N  + L V
Sbjct: 544 KQLTLVNQIDAALPCTHADEDRIQQIFYNLIGNAIKFSDQGE--IVVTGQQVNGWLELSV 601

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
           RD G+G+    L+   +PF Q  +      +G GLGL + + +V  + G   + S   +G
Sbjct: 602 RDQGIGIDADSLKTIFEPFEQADSGAGRASQGAGLGLAITRNLVQLHGGDLSVESQLGQG 661

Query: 802 TLIEIIFPLYD 812
           +      P+ +
Sbjct: 662 STFCFTLPVSE 672



 Score = 62.7 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 52/443 (11%), Positives = 121/443 (27%), Gaps = 71/443 (16%)

Query: 271  EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330
                         +       L      S     H    +      E  + +   VD  P
Sbjct: 667  TLPVSEWAAQTAASSIATLQPLSAPLPSSVLLPEHAAEEATPPQTQEEGDFSILVVDDEP 726

Query: 331  IPFFVYSHG------NLFYAN--PSFLLLTKYKSVDDI------------EIAGGLSTLL 370
            +   V  +        +  AN     L L + ++ D I            E+   L    
Sbjct: 727  VNLQVLVNQLHVARYRVRIANSGQQALDLVEEETPDLILLDIMMPHMTGYEVCQRLRRTY 786

Query: 371  DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
            +A +L          +    +   A +       ++R+  LA      +    +      
Sbjct: 787  NAAQLPVIMLTARSRVSDVVQGFQAGANDYVAKPFSRDILLARVRTQLQLGRAYQTLAEN 846

Query: 431  NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490
              ++ E    +  + ++     +L  +L++  D +  +N    I   N + ++L G   +
Sbjct: 847  MRLKKELEQRQQTELELRQTQRRLAQLLDSVDDMVITVNESREISFYNHSAAQLLGVDDD 906

Query: 491  DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
             +L         +      +                             +L         
Sbjct: 907  ALLGHGLEDVFTKAWVEKFD-----------------------------TLSGCPHPGGN 937

Query: 551  SSCYSLTMH--DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
             +  + ++   D+ +      ++     +   E       + RVS EI            
Sbjct: 938  ENGTACSLTGVDVVKADGHTQQVDVIATMLTLEDEALQTLILRVSQEI------------ 985

Query: 609  VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL-DISKIESGKMNLHFEPVSLDEA 667
                    P  +P  +     ++R    +  + N L   + +++S    +  E  +LD+A
Sbjct: 986  -------APAPSPVTVNVIAAVNRHQQRLRGLENALNGLLPRLQSDAPEVVNEIRTLDQA 1038

Query: 668  VSEAISLVQLYANEKRILIRTSF 690
            +++    +   A   R  +    
Sbjct: 1039 LADVEKNLYTSAENDRRRLAVQV 1061


>gi|150005758|ref|YP_001300502.1| two-component system sensor histidine kinase, FrrD [Bacteroides
           vulgatus ATCC 8482]
 gi|254882063|ref|ZP_05254773.1| two-component system sensor histidine kinase [Bacteroides sp.
           4_3_47FAA]
 gi|294777238|ref|ZP_06742694.1| sensor histidine kinase/response regulator [Bacteroides vulgatus
           PC510]
 gi|319640929|ref|ZP_07995638.1| sensor protein [Bacteroides sp. 3_1_40A]
 gi|149934182|gb|ABR40880.1| two-component system sensor histidine kinase, FrrD [Bacteroides
           vulgatus ATCC 8482]
 gi|254834856|gb|EET15165.1| two-component system sensor histidine kinase [Bacteroides sp.
           4_3_47FAA]
 gi|294448952|gb|EFG17496.1| sensor histidine kinase/response regulator [Bacteroides vulgatus
           PC510]
 gi|317387448|gb|EFV68318.1| sensor protein [Bacteroides sp. 3_1_40A]
          Length = 489

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 77/373 (20%), Positives = 173/373 (46%), Gaps = 31/373 (8%)

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNT--P 506
                + +I+ + ++ I  +N +  IL  N     +     E++++        +N    
Sbjct: 133 ASKKYMETIINSINEPIIGLNNDMEILFINDEALNVINLKREEVIKHSAQDISLRNDLLR 192

Query: 507 SVMNHYLT---EILSLDLRQTLEKITLGSTKEEKLLSL-RIIIKKLPFSS------CYSL 556
            ++   +    E +    ++  E + + +  +E    +  + I +            Y +
Sbjct: 193 RLIRELVEIPGEPVKDKEKEKKEPLKIYADNKESFFQVKYMSISQPGKDGVTMEKKGYVI 252

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            + +I+E+K              +  S K+ F++ +SHE++TP++AI+   +++++QR G
Sbjct: 253 MLKNITEFK--------------ELDSAKTTFISTISHELKTPISAIMMSLQLLEDQRIG 298

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
            L N    + AN I  +   +L+I  +LL+++++ESGK+ L  +     E +  AI   +
Sbjct: 299 AL-NEEQEDLANSIKENSERLLNITGELLNMTQVESGKLQLKPKITKPIELIEYAIKANR 357

Query: 677 LYANEKRILIRTSFANN-IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE 735
           + A +  I I   +  + I ++  D   +  +  N+LSNAI ++P  G+++I    T + 
Sbjct: 358 VQAEKFNIQIEVEYPEDKIGKLFVDSEKIAWVLTNLLSNAIRYSPENGRVVIGARQTDDG 417

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            + + VRD G G+     +     + ++P +   + +G+GLGL +++  V+A+ G   + 
Sbjct: 418 FIEMFVRDFGKGIDPRYHKSIFDHYFRVPGT---KVQGSGLGLSISRDFVEAHNGTLTVD 474

Query: 796 STPAKGTLIEIIF 808
           S   +G+   +  
Sbjct: 475 SKLGEGSTFVMRL 487


>gi|301309247|ref|ZP_07215191.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
 gi|300832929|gb|EFK63555.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
          Length = 846

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 99/559 (17%), Positives = 202/559 (36%), Gaps = 54/559 (9%)

Query: 275 FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF 334
           +  +++          ++     E    + H      +    + E       DK P    
Sbjct: 177 WSALDIENLHMLADILSIAIERGEVQGLVEHT-----AMQVMKSETKFKIIFDKMPWGAE 231

Query: 335 VYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393
           +Y   G L   N + L +        + +      + + P +          L       
Sbjct: 232 LYDENGVLVDINQADLDIFGVTREQAVGLN-----MFENPNIPKYVNQS---LKNGKDIF 283

Query: 394 IAASARLHTIQWNR-------ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
              +        N          +  +        +          I  +D +  I + +
Sbjct: 284 FPLNYDFKVASQNGYYDSHHDSKTKHLLVKGVTLKDSLDNIFGYIYIVFDDTENHIKREQ 343

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILST----------NRAVSKLFGYPVEDILRKP 496
           +E  + +L   ++     +   + E   L+           N  +  +  Y  +   ++ 
Sbjct: 344 IENSLARLKVSVDTGDSILWEYDVENDKLTVDFGLNEDINNNEGLKAIHDYNFK--NQED 401

Query: 497 FTVFLEQNTPSVMN-HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--- 552
           +   +  +    +       +L   +   +         +    +  +   K        
Sbjct: 402 YKSSIHPDDFDRVYNKQFKPLLQGKINNFVAAYRRILNGKTFWFNSNVRSYKFNDDGTPN 461

Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
                  +I++ ++++ +L   K    +    KS FLA +SHEIRTPL AI+GFS +I  
Sbjct: 462 RIVSYTSNITQQREKEIELIKVK----EADKLKSAFLANMSHEIRTPLNAIVGFSNIIAE 517

Query: 613 QRFGPLGNP-RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
                + +      Y + I ++ +L+L +++D+LD SKIE+G M+ HFE V + +   E 
Sbjct: 518 -----IDDEVERQSYLDIIHKNNDLLLQLIDDILDFSKIEAGTMDYHFEEVDIKDICGE- 571

Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
           I+L         + +     +    +  D R V Q+  N ++NAI FT  G  I I    
Sbjct: 572 IALADSIKMPSDVDLIFDLDSPSVIVKTDERRVMQVISNFVNNAIKFTTKGS-ITIYYEI 630

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
              + + + V+DTG+G++     +  + F ++        +GTGLGL +++ +++A  GK
Sbjct: 631 E-GDFIRVCVKDTGIGISAENQRRIFERFIKVDTF----QQGTGLGLTISRTIIEALGGK 685

Query: 792 FYIFSTPAKGTLIEIIFPL 810
             + S    G+      PL
Sbjct: 686 IGVDSEEGVGSTFWFTLPL 704


>gi|258576055|ref|XP_002542209.1| hypothetical protein UREG_01725 [Uncinocarpus reesii 1704]
 gi|237902475|gb|EEP76876.1| hypothetical protein UREG_01725 [Uncinocarpus reesii 1704]
          Length = 1290

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 76/254 (29%), Positives = 127/254 (50%), Gaps = 10/254 (3%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           IS  +    + + A++ AE  +  KS+FLA +SHEIRTP+  IIG +++  +        
Sbjct: 696 ISNLRDSIQRNTQAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDD---LK 752

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
           P   E  N +    N +L I++D+LDISKIE+ +M +   P ++   V  A+  + + AN
Sbjct: 753 PYPREMLNVVHSLANSLLTIIDDILDISKIEANRMVIESIPFTMRGTVFNALKTLAVKAN 812

Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIIS-----TTHTS 733
           EK + +     +++P  ++ D   ++QI LN++ NAI FT  G  ++ IS          
Sbjct: 813 EKFLNLTYQVDSSVPDYVIGDPFRLRQIILNLVGNAIKFTEHGEVKLTISKSTREICQDE 872

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
                  V DTG+G+   +L+     F Q   S   +  GTGLGL ++K +V+   G  +
Sbjct: 873 EYAFEFSVSDTGIGIEEDKLDMIFDTFQQADGSTTRKFGGTGLGLSISKRLVNLMGGDVW 932

Query: 794 IFSTPAKGTLIEII 807
           + S    G+     
Sbjct: 933 VTSEFGHGSTFHFT 946


>gi|197336844|ref|YP_002158691.1| transcriptional regulator [Vibrio fischeri MJ11]
 gi|197314096|gb|ACH63545.1| transcriptional regulator [Vibrio fischeri MJ11]
          Length = 766

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 73/259 (28%), Positives = 123/259 (47%), Gaps = 8/259 (3%)

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            +Q    L  A+  AE  +  KS FLA +SHEIRTP+ A++G   ++K+    P      
Sbjct: 220 LEQNYQDLQQARNEAEAANKSKSRFLASMSHEIRTPMNAVLGLLAILKDTSLKPN----Q 275

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            E  N    S  L+L I+ND+LD S++E+    L     ++ E+++  +      A  K+
Sbjct: 276 KELVNTATDSSELLLSIINDILDFSRMEANTFYLENHTFNMHESLNSVLKTFHPQAQNKQ 335

Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL--R 740
           + +    A+N+P  +  D   ++QI LN++ N++ FT +G   I+         + L   
Sbjct: 336 LELSLVIADNVPVYVQGDAHRLRQILLNLVGNSLKFTDNGQIQILVNAKEHEGRIQLHCS 395

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V+D+G+G+   +LE     F    NS     EG+GLGL + + +V    G   + S    
Sbjct: 396 VQDSGIGIQPEQLEYLFDEFTMADNSFSRTHEGSGLGLAICQRLVHMMDGTITVNSQYGL 455

Query: 801 GTLIEIIFPLYDTSHPHDC 819
           G+       L D + P + 
Sbjct: 456 GSEFSFNIKL-DKATPEEI 473


>gi|294776221|ref|ZP_06741706.1| sensor histidine kinase/response regulator [Bacteroides vulgatus
           PC510]
 gi|294449904|gb|EFG18419.1| sensor histidine kinase/response regulator [Bacteroides vulgatus
           PC510]
          Length = 757

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 94/435 (21%), Positives = 173/435 (39%), Gaps = 20/435 (4%)

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV-- 438
            + +  Y+     I     +    W  + +  +  +           +            
Sbjct: 335 WQVMKRYQIPPESIPPEYTIMYRPWEEKYATPILILESLLVFTLLLGIAYLIYIYTLEKG 394

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
             +   R +  E   L   LE  +      + +  +L   +A  +L       +  +   
Sbjct: 395 RKKEALRNLRFEHEALTLALEGGNTYAWCFDGKTAVLD--QAFCELTNRSQNLLGIEEIA 452

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS-LT 557
            ++  +  +     ++ IL    R+T +     +    +    R  + +    +      
Sbjct: 453 HYVHPDEQARFRKNVSNIL-YRQRRTAQYRCQFNDTGYQWWEFRYSVLQNNEQNPIITGL 511

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
           + +I E K ++ +L  A+K+AE+    K  FLA +SHEIRTPL AI+GFS ++  ++   
Sbjct: 512 LVNIQEIKDKEEELIRARKLAEQA-ELKQSFLANMSHEIRTPLNAIVGFSNLLTTEK--N 568

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
           +      E+A+ ID +  L+L +VND+L++S+IESG M+ H E  S            Q+
Sbjct: 569 ISEEEKKEFASIIDNNTRLLLKLVNDVLELSRIESGNMSFHCEDCSAHHFAETVYQTHQV 628

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH---TSN 734
                 +     F +    I  D   + Q+  N L NA  FT  G    I   +      
Sbjct: 629 IILPP-VEFIKEFPDEDVTIHIDRMRLTQVITNFLGNAKKFTSQG---HIKLGYFCDKEK 684

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
           +E+ + V DTG G+   EL+   + F +    +    +G GLGL ++K +V+   G   +
Sbjct: 685 KEIHIFVEDTGAGIPKEELQMIFERFYK----RNEFVQGVGLGLAISKVIVEKMNGHIDV 740

Query: 795 FSTPAKGTLIEIIFP 809
            S   KG+    + P
Sbjct: 741 QSEVNKGSRFTAVLP 755


>gi|281206288|gb|EFA80477.1| histidine kinase [Polysphondylium pallidum PN500]
          Length = 878

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 77/267 (28%), Positives = 131/267 (49%), Gaps = 14/267 (5%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E K +  +L+ AK  A +    + +FLA +SHEIRTPL  +IG + ++++    P   P 
Sbjct: 448 ETKTKNLQLTVAKDAAVEAYQARQEFLATMSHEIRTPLNGLIGMATLLRDSLSLP---PE 504

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             + A  +   G+++L +VND+LD+SK+E+ +M +      + +   E   ++   A E 
Sbjct: 505 EKQMAKSVKSCGDILLRLVNDILDLSKLEANQMVVENIGFRVKDMAHEICQVLAAQAKEH 564

Query: 683 RILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----- 736
            + ++   A+N+P +L  D   + Q+ +N+  NAI FTP G   II      + E     
Sbjct: 565 NLRLQYEVADNVPPVLFGDTGRILQVLMNLTGNAIKFTPEGVVKIIIDLIEDDAEKITFK 624

Query: 737 -----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
                V  RV+DTG+G+     +K  + F Q   S   +  G+GLGL L   +V    G+
Sbjct: 625 SDEYNVCFRVQDTGIGVPPESHQKIFEAFVQADPSDSRKYGGSGLGLYLCAKLVKLMRGE 684

Query: 792 FYIFSTPAKGTLIEIIFPLYDTSHPHD 818
             +++    G+    I PL   S   +
Sbjct: 685 IGVYNNQHGGSTFWFILPLNVGSEMEE 711


>gi|255320871|ref|ZP_05362045.1| sensor protein GacS [Acinetobacter radioresistens SK82]
 gi|262380236|ref|ZP_06073391.1| sensor protein gacS [Acinetobacter radioresistens SH164]
 gi|255302040|gb|EET81283.1| sensor protein GacS [Acinetobacter radioresistens SK82]
 gi|262298430|gb|EEY86344.1| sensor protein gacS [Acinetobacter radioresistens SH164]
          Length = 934

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 76/243 (31%), Positives = 129/243 (53%), Gaps = 14/243 (5%)

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
           +  A   +  KS FLA +SHE+RTPL +I GF  ++  Q    L N + + Y   I +S 
Sbjct: 279 RDQAISANQAKSVFLANISHELRTPLNSIDGFIHLMLRQ--DNLSNEQNL-YLQTIRKSS 335

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
             +L ++ND+LD SKI++GK+ L   P  L+EA+ + + ++   A +K+I +   + +++
Sbjct: 336 AHLLALINDVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKQIDMAFYYGDDV 395

Query: 695 PR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMT 749
           P+ I+ D+   KQI  N++SNAI FTP G +II+      +      +   V+D+G+G++
Sbjct: 396 PQYIVGDVLRFKQILTNLISNAIKFTPDG-EIIVRARMEQDGMEQCLLHFSVQDSGIGLS 454

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP-----AKGTLI 804
             + +K  + F Q   S   +  GTGLGL ++K +V    G+             KG+  
Sbjct: 455 GTDRKKLFESFSQGDTSVTRQFGGTGLGLAISKQLVHLMQGQIGFEDNQERAPTEKGSTF 514

Query: 805 EII 807
              
Sbjct: 515 WFT 517


>gi|331658528|ref|ZP_08359472.1| sensor protein EvgS [Escherichia coli TA206]
 gi|315298194|gb|EFU57458.1| response regulator receiver domain protein [Escherichia coli MS
           16-3]
 gi|331054193|gb|EGI26220.1| sensor protein EvgS [Escherichia coli TA206]
          Length = 1197

 Score =  274 bits (700), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 90/421 (21%), Positives = 167/421 (39%), Gaps = 16/421 (3%)

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
            W+  +                  +    +       ++ +  +E ++    ++ ++  +
Sbjct: 528 TWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISFRKALSDSLPN 587

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--NTPSVMNHYLTEILSLDL 521
              ++N +G ++S N A    F          P         +  S  +    E      
Sbjct: 588 PTYVVNWQGNVISHNSAFEHYFTDDYYKNAMLPLENSESPFKDVFSNTHEVTAETKENRT 647

Query: 522 RQTLEKIT-LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
             T       G  K        +        + Y     DI+E +   + L   +  A  
Sbjct: 648 IYTQVFEIDNGIEKRCINHWHTLCNLPASEHAVYICGWQDITETRDLIHALEVERNKAIN 707

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            +  KS FLA +SHEIRTP+++I+GF E++       L   + +E  +    +G  +L +
Sbjct: 708 ATVAKSQFLATMSHEIRTPISSIMGFLELLS---GSGLSKEQRVEAISLAYATGQSLLGL 764

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR---I 697
           + ++LD+ KIESG   L  + V +   V          A  K I +  S ++ +P    +
Sbjct: 765 IGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIAL--SCSSTLPERYLV 822

Query: 698 LADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMTNYELE 754
             D ++ KQ+  N+LSNA+ FT  G  +I  S  H  +   ++   + D+G G++  E +
Sbjct: 823 KIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLGHIDDNHAVIKMTIMDSGSGLSQEEQQ 882

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           +  K + Q   S   +  G+GLGL + K ++    G   + S P  GT+  I  P+  T 
Sbjct: 883 QLFKRYSQT--SAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTIFTITIPVEITQ 940

Query: 815 H 815
            
Sbjct: 941 Q 941


>gi|22298442|ref|NP_681689.1| two-component sensor histidine kinase [Thermosynechococcus
           elongatus BP-1]
 gi|22294622|dbj|BAC08451.1| two-component sensor histidine kinase [Thermosynechococcus
           elongatus BP-1]
          Length = 729

 Score =  274 bits (700), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 84/298 (28%), Positives = 140/298 (46%), Gaps = 7/298 (2%)

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH 573
            +       Q  E   L    +   +++             +     ++E  Q   +   
Sbjct: 292 HQCDRPRQWQPQEVEFLTHLSQHLSIAIYQAQLYSELQQQKATLEQRVNERTQALREAL- 350

Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
                E     K+DFLA +SHE+RTPLT +IG S  +     GPL   +  EY   I  S
Sbjct: 351 --SAMEAAHRIKNDFLATMSHELRTPLTCVIGVSATLLRWPLGPLT-AKQREYLEIIHES 407

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF--A 691
           G  +L+++N +LD+S+ E G+  LH    S+ +  ++ + +V+  A+  ++ +R      
Sbjct: 408 GTHLLELINSILDLSEAELGRSQLHRSAFSIRQLCADCLEVVKPQAHRHQVNLRHQLMIP 467

Query: 692 NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNY 751
               R   D R ++QI +N+LSNAI FTP+ G++I+      + E+I +V+DTG+G+  +
Sbjct: 468 PTRDRFWGDYRRIQQILINLLSNAIKFTPAMGEVILRAWWKED-ELIFQVQDTGIGIPAH 526

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
                 + F Q+ +S      G GLGL L K  VD + G   + ST  KG+   +  P
Sbjct: 527 LQSLLFQKFQQLDSSFGRAYTGAGLGLALTKQWVDLHHGWIDVDSTEGKGSTFTVGLP 584


>gi|300113426|ref|YP_003760001.1| histidine kinase [Nitrosococcus watsonii C-113]
 gi|299539363|gb|ADJ27680.1| histidine kinase [Nitrosococcus watsonii C-113]
          Length = 437

 Score =  274 bits (700), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 79/420 (18%), Positives = 158/420 (37%), Gaps = 35/420 (8%)

Query: 396 ASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
               L  + W +     + +   +K  Q         +E         +++      +L 
Sbjct: 30  FLFTLGYVLWQQRQLYYL-YRWLQKPKQRRSPAEVGIMEEVVRQIDFMRQRHRSRKDKLS 88

Query: 456 SIL-------EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
             L        A  D   ++N+   I   N A  +L G      + +  +  +       
Sbjct: 89  QYLKRFQKATAALPDATVVLNQYDEIEWANEASRRLLGLKSPWDIGQRISNLIRYPDFVE 148

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568
           +     ++           +    +     L L I I          L + D++   Q +
Sbjct: 149 LMALDRKVSG---------MVELPSPINPALHLNIRIFPYGEGQR-LLVVQDVTRLHQLE 198

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
                           + DF+A VSHE+RTPLT + G+ EV++ ++   +G+  +     
Sbjct: 199 --------------RMRRDFIASVSHELRTPLTVLRGYLEVLEKRK--NVGSESWNRSFK 242

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            +      +  +V DLL +S++ES        PV++ + ++E     ++ + +++  I  
Sbjct: 243 TMGEQVGRMQHLVEDLLMLSRLESRDKKPAETPVAVPKMLAEICQEARILSGDRQHHIHL 302

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748
                +  +  + + +     N++ NAI +TP+ G I +           L VRDTG G+
Sbjct: 303 EADAGL-WLRGNEQELHSAFSNLVVNAIRYTPAQGNITLHWFKQQAGRPCLEVRDTGEGI 361

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
               L +  + F +I   +  +  GTGLGL + K ++  +     I S   KG++   +F
Sbjct: 362 AAEHLPRVTERFYRIDKDRSRKRGGTGLGLAIVKHVLSHHEAHLEIESELGKGSVFRCLF 421


>gi|238791234|ref|ZP_04634873.1| Signal transduction histidine-protein kinase barA [Yersinia
           intermedia ATCC 29909]
 gi|238729367|gb|EEQ20882.1| Signal transduction histidine-protein kinase barA [Yersinia
           intermedia ATCC 29909]
          Length = 911

 Score =  274 bits (700), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 88/335 (26%), Positives = 152/335 (45%), Gaps = 17/335 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           LF Y +   +  P    +       ++      L   +   +             +++ +
Sbjct: 183 LFAYRLMRDVTGPIRNMVN-----AVDRIRRGQLDSRVEGHMLGELNILKNGINSMAMSL 237

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                           D+ E  ++      +L  AKK A++ +  KS+FLA +SHE+RTP
Sbjct: 238 AAYHEEMQQNIDQATSDLRETLEQMEIQNVELGLAKKRAQEAARIKSEFLANMSHELRTP 297

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+     Q       P   +Y   I RS N +L I+ND+LD SK+E+ K+ L  
Sbjct: 298 LNGVIGFT----RQTLKTSLTPTQTDYLQTIQRSANNLLCIINDVLDFSKLEAEKLILEH 353

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P  L  A+ E I L+   A+EK + +     N++P  ++ D   ++QI  N+L NAI F
Sbjct: 354 IPFPLRGALDEVIILLAHTAHEKGLELTLHVNNDVPEQLVGDAMRLQQIVTNLLGNAIKF 413

Query: 719 TPSGGQ-IIISTTHTSNEEV--ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T  G   I+++    ++++V  ++ + DTG+G++  +  +  + F Q   S   R  GTG
Sbjct: 414 TEQGNIDILLAVQAKTDQQVTLVVEIHDTGIGISESQQAQLFQAFRQADASISRRHGGTG 473

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           LGL + + +V    G    +S   +G+       L
Sbjct: 474 LGLVITERLVKEMGGDISFYSQVDRGSTFRFHLTL 508


>gi|323485533|ref|ZP_08090879.1| hypothetical protein HMPREF9474_02630 [Clostridium symbiosum
            WAL-14163]
 gi|323401181|gb|EGA93533.1| hypothetical protein HMPREF9474_02630 [Clostridium symbiosum
            WAL-14163]
          Length = 1312

 Score =  274 bits (700), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 111/758 (14%), Positives = 226/758 (29%), Gaps = 70/758 (9%)

Query: 102  LPKTIGNYAFKMIG-----MRLCDVS------DILHIDPNNHIGDLLKRQNTWYGKTTLW 150
                 G     + G         +                      +   +     +   
Sbjct: 428  HTAYSGQKVQSLFGLGKIVDNFPETWLRMGYIHEEDQKTYRKAFADIDNGSLQEEFSARA 487

Query: 151  PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
             I G++ ++ ++     I          R            +       + ++       
Sbjct: 488  KIPGSDRWIWMNFRCNVICDDTGR--AIRTICTAENIDRYKELEQTFFEVMRQNGVTSWK 545

Query: 211  KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270
                     E   + S      H +++  +     ++       +     +   E     
Sbjct: 546  YDMERQAVLEGNKVVSAYGLHAH-QIQEGLIEGKLFHPEDATKARLLLQHIREGEREVSG 604

Query: 271  EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET----- 325
                F          +  +  L +        L      S      +             
Sbjct: 605  IFRVFDKKAGEYSWIRLSYTVLVDADGIRRTALGSAMDISREIQHRQKFEEMLLLHKNKK 664

Query: 326  -VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
             +D     +       +   N         +            T      + +    + +
Sbjct: 665  NLDTLLTGYCSLKENIIKGLNDFSGQDFGQRYGSV---RDEFFTRFADAIVDEKERSQFL 721

Query: 385  MLYRSDRTCIAA--------SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
              Y +               +      +   E       +    A    + +       +
Sbjct: 722  DTYLAKPLLADFAKGISNHNNIYYCKFRDEDEGLYVQVNVDTMLAPDKNDVIGFL-TVSD 780

Query: 437  DVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRK 495
                 I ++ +         ++E   D IA+I+   G I      +    G        +
Sbjct: 781  MSQQVIAEKIINR-------VVEQEFDFIALIDIASGNI----DRIIDRMGEYDHPARGE 829

Query: 496  PFTV--------FLEQNTPSV------MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
             + +        ++ +           +   L  +             +     ++   L
Sbjct: 830  NYDMRVGNGLLTYVVEEEREACSNTNTIQGILKGLGEAGNDYQTAYSIVNPKTGKRERKL 889

Query: 542  RIIIKKLPFSSCYSLTMHDISE--WKQEKNK--LSHAKKIAEKESSHKSDFLARVSHEIR 597
                          LT  D++    K+++ +  LS A + A+  +  KSDFLA +SH+IR
Sbjct: 890  WTFSYFDDTKKKVILTRTDMTATYLKEQEQQRNLSEALEFAKAANKAKSDFLAAMSHDIR 949

Query: 598  TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
            TP+ AIIG +E+  +         +  E    I  S   ++ I+ND+LDIS+IESGK  +
Sbjct: 950  TPMNAIIGMTELALSDLS---DREQIHESFTTIKSSSAHLISIINDILDISRIESGKAEM 1006

Query: 658  HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
              E  S  E   + +  +   A  K ++   S        + D+  + ++  N+LSNAI 
Sbjct: 1007 LQEQFSSREEHQKIVKRIAPLAEAKGLVFTHSLDIRHDCCIGDVARLNRVVDNLLSNAIK 1066

Query: 718  FTPSGGQI-----IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
            FTP GG++      +      +    + V DTG+GM  +      +PF +  +S     E
Sbjct: 1067 FTPEGGRVDYSFAELPCCRPDHILCRITVTDTGIGMDEHTRACLFEPFFRHLDSAAGNVE 1126

Query: 773  GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            GTGLG+ + K+ V+ + G   + S P +G+   +  P+
Sbjct: 1127 GTGLGMSIVKSTVELSGGSIEVESEPGRGSKFIVKIPI 1164



 Score = 57.3 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 33/278 (11%), Positives = 87/278 (31%), Gaps = 15/278 (5%)

Query: 325 TVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTL----LDAPKLSDNN 379
            V+K    +F++ +  +      +   +    + +       + T     L         
Sbjct: 11  LVNKLNEAYFLHRNLEIILSCFSADAHVVGVSTGEVSNGLEQIRTAVSKGLATVPFVSGR 70

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
             + +ML    +  +  S +   +    E  LA  FI      +         I      
Sbjct: 71  ETEVLMLRERRKDLVEVSVKYTLLSQRGEPVLA-PFIVTANCEEESHGWKITLIHSSMPG 129

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGII--LSTNRAVSKLFGYPVED---ILR 494
             +    +E    +L ++++A   G+A+     +      ++ V +L GY  E+   +++
Sbjct: 130 DYVEAFFLET---KLQNVIDAIPGGVAVYRVSDVFDMQYFSKGVPELTGYTPEEYRRVIK 186

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554
              +              L      +     E      + +   + ++  +         
Sbjct: 187 DEPSAMPSSEDTQTAMRKLRYAAEHNASADFEFRMYHRSGDTVWVRIQAKVIGYEDGYPL 246

Query: 555 S-LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
                H+I+  K+ + +L  A++  ++  +  SD +  
Sbjct: 247 LHCVYHNITARKKAELELLKARQENDRLLAEYSDSINN 284



 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/280 (7%), Positives = 71/280 (25%), Gaps = 22/280 (7%)

Query: 319 ENLTPETVDKCPIPFFVYSHGNL---FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
           E      +D  P    VY   ++    Y +     LT Y   ++                
Sbjct: 138 ETKLQNVIDAIPGGVAVYRVSDVFDMQYFSKGVPELTGYTP-EEYRRVIKDEPSAMPSSE 196

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
               A++ +              R++       +++ +         +    +       
Sbjct: 197 DTQTAMRKLRYAAEHNASADFEFRMY---HRSGDTVWVRIQAKVIGYEDGYPLLHCVYHN 253

Query: 436 EDVDTRINKRKM---EIEVMQLCS----ILEATSDGIAIINREGI----ILSTNRAVSKL 484
                +  + ++     E  +L +     +  +  G+  I   G      +  ++    +
Sbjct: 254 -ITARKKAELELLKARQENDRLLAEYSDSINNSPGGLVTIEITGAGMPFPIFVSQGFLNI 312

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT-LEKITLGSTKEEKLLSLRI 543
                E   +       +   P  +   +     L      ++        +   + ++ 
Sbjct: 313 TRMTREQFYQVYVDSAFDGLHPDDIQRVIAAYRRLQKPGDQMDDTFRLVCGDGTYVWVQA 372

Query: 544 IIKKLPFSSCYSLTM--HDISEWKQEKNKLSHAKKIAEKE 581
                       + +   D ++  + + K    ++  E+ 
Sbjct: 373 RATLTEREGRRIIYIGYLDATDRIEAQKKQYLQQQALEQA 412



 Score = 42.7 bits (99), Expect = 0.23,   Method: Composition-based stats.
 Identities = 43/396 (10%), Positives = 101/396 (25%), Gaps = 46/396 (11%)

Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD 252
           P    + +  + S +   +   +++ K +Y      S     RM ++             
Sbjct: 178 PEEYRRVIKDEPSAMPSSEDTQTAMRKLRYAAEHNASADFEFRMYHRSGDTVWVRIQAKV 237

Query: 253 VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
           +   + YPLL                 L     +Q    L     +S             
Sbjct: 238 IGYEDGYPLL---HCVYHNITARKKAELELLKARQENDRLLAEYSDSIN----------- 283

Query: 313 AYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANP-SFLLLTKYKSVDDIEIAGGLSTL- 369
                G      T    P P FV     N+       F  +    + D +        + 
Sbjct: 284 -NSPGGLVTIEITGAGMPFPIFVSQGFLNITRMTREQFYQVYVDSAFDGLHPDDIQRVIA 342

Query: 370 -LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
                +   +       L   D T +   AR    +      + + ++            
Sbjct: 343 AYRRLQKPGDQMDDTFRLVCGDGTYVWVQARATLTEREGRRIIYIGYL------------ 390

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
                  +  D    ++K  ++   L   ++ ++      +       + + V  LFG  
Sbjct: 391 -------DATDRIEAQKKQYLQQQALEQAIDHSNLMFWEYDCSSHTAYSGQKVQSLFGL- 442

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK---EEKLLSLRIII 545
            + +   P T                +  +     +L++      K    ++ + +    
Sbjct: 443 GKIVDNFPETWLRMGYIHEEDQKTYRKAFADIDNGSLQEEFSARAKIPGSDRWIWMNFRC 502

Query: 546 KKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKI 577
             +   +        T  +I  +K+ +       + 
Sbjct: 503 NVICDDTGRAIRTICTAENIDRYKELEQTFFEVMRQ 538


>gi|315647993|ref|ZP_07901094.1| multi-sensor hybrid histidine kinase [Paenibacillus vortex V453]
 gi|315276639|gb|EFU39982.1| multi-sensor hybrid histidine kinase [Paenibacillus vortex V453]
          Length = 894

 Score =  274 bits (700), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 79/254 (31%), Positives = 127/254 (50%), Gaps = 11/254 (4%)

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
             ++L +  K  EK S +KS FLA +SHE+RTPL +++  S+++   + G L       Y
Sbjct: 479 AASELENYAKELEKSSKYKSQFLANMSHELRTPLNSMLILSQILSENKQGNLTEEEQ-HY 537

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
           A+ I  SG+ +L+++ND+LD+SK+E+GK+ +  + V+L E            A  K +  
Sbjct: 538 ASVIHNSGSELLNLINDILDLSKVEAGKLQIEMDLVNLTELPEVMEGYFSKSAESKNLEF 597

Query: 687 RTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQ---------IIISTTHTSNEE 736
               A ++P  + +D   + QI  N+LSNAI FT SG           I+ S    S E 
Sbjct: 598 EIEMAEDLPDMMYSDGMRLHQILRNLLSNAIKFTESGSVKLSVKKMNSIVTSDFIISGEV 657

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           +   V DTG+G+    L+   + F Q   +   R  GTGLGL ++  +     G   + S
Sbjct: 658 IAFSVEDTGIGIAAEHLQPIFEAFQQGEETTARRFGGTGLGLSISLHLAKLLGGYITVES 717

Query: 797 TPAKGTLIEIIFPL 810
               G++  +  PL
Sbjct: 718 EEGSGSIFVLYLPL 731


>gi|189426492|ref|YP_001953669.1| Hpt sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189422751|gb|ACD97149.1| Hpt sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 717

 Score =  274 bits (700), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 72/252 (28%), Positives = 129/252 (51%), Gaps = 11/252 (4%)

Query: 563 EWKQEKN--KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           E + E+   +L+ A++ AE  S  KS+FLA +SHEIRTP+  ++G +E++ +  F P   
Sbjct: 191 EQRVEERTRELAIAREKAEAASRAKSEFLANMSHEIRTPMNGVMGMTELLLDGGFSP--- 247

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
            +  +    I  S   ++ I+ND+LD SKIE+GK+ L   P  L + + + +  + L A 
Sbjct: 248 EQQRKQLLAIRDSAENLMVIINDILDFSKIEAGKLELAAAPFLLRKNLEQGLYSLGLKAE 307

Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE--- 736
           +K + +       +P  +  D   ++QI +N++ NAI F+  G +I +S    ++     
Sbjct: 308 QKGLRLVIRVDQAVPDRLDGDCYKLRQILINLVGNAIKFSDQG-EITVSAQLEASRGGFL 366

Query: 737 -VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            V   V D G+G+      +  + F Q   +   +  GTGLGL + + + +   G+ ++ 
Sbjct: 367 LVRFCVADQGIGIPLESQSRIFETFEQADVTTTKKFGGTGLGLTICRRLAELMGGRIWVK 426

Query: 796 STPAKGTLIEII 807
           S P KG+     
Sbjct: 427 SEPGKGSSFFFT 438


>gi|115388335|ref|XP_001211673.1| two-component system protein A [Aspergillus terreus NIH2624]
 gi|114195757|gb|EAU37457.1| two-component system protein A [Aspergillus terreus NIH2624]
          Length = 735

 Score =  274 bits (700), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 92/558 (16%), Positives = 188/558 (33%), Gaps = 51/558 (9%)

Query: 282 QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN- 340
           + +         +      +     +       +D             PIP  V      
Sbjct: 7   EASAALVTTPPADEELNLKQLAREVDKLRSKNSYDPA---LSRIYRYTPIPTIVLDPSWC 63

Query: 341 LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400
           +   + S L  +       +            P          +    + +         
Sbjct: 64  IVEVSNSHLAFSGQSRDGLLHACISDLPPHAIPVPDIATIYGALHAAVATKDIQTVEDIH 123

Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSIL 458
                  E             ++  E +             ++    +          ++
Sbjct: 124 C-----GEIGAFFRLRVIPIFDES-ELLYIILEANNITMDHLHAADHQHAYVNETYKILV 177

Query: 459 EATSD-GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEIL 517
           +   D  I +++ +G I++ N   + L GY   +I+ + F+VF               + 
Sbjct: 178 DTVKDYAIFMLDTKGNIVTWNSGAAILKGYTAPEIIGRHFSVFYGPEDRRNGKPG-RGLA 236

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEKNKLSHA 574
                  +E       ++       ++I  +        +     D++E K  + ++   
Sbjct: 237 VCLREGKMEDEGWRYRQDGSRFWANVMITPIYQFGRHVGFVKVTRDLTERKAAEARMI-- 294

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
               E+ S  K+DFLA +SHEIRTP+  ++    ++     G     +  EYA  ++ S 
Sbjct: 295 -AAFEESSKMKTDFLANMSHEIRTPMNGMLLALTML----TGTELTDQQREYAAIMEDST 349

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
           +++L ++ND+LD SK+ SG  +L+ + V  +  V   +   +   N   + +  SF    
Sbjct: 350 SILLQVINDVLDYSKLSSGSFSLNSDVVKAETIVDAVVRNCRSGLNP-DVELTCSFQPGF 408

Query: 695 PR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE------------------ 735
           P  +  D    +Q+  N+L NA+ FT  G  I +S ++T+ E                  
Sbjct: 409 PTNLQGDPLRFRQVLQNLLGNAVKFTEKG-YIKLSLSYTAVEDDDTDTKDKTSDDSDNEK 467

Query: 736 -----EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
                 +   V D+GVG+ +  +     PF +  ++     +GTGLGL + K++ +   G
Sbjct: 468 IPSAYRIRTEVTDSGVGVPDTAINTLFTPFTRFADASVRHYQGTGLGLSICKSLAELMDG 527

Query: 791 KFYIFSTP-AKGTLIEII 807
                  P   G++    
Sbjct: 528 TVGYQPNPEGPGSMFWFT 545



 Score = 50.8 bits (120), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 14/117 (11%), Positives = 30/117 (25%), Gaps = 7/117 (5%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID--PNNHIGDLLKRQNTW 143
            + +D  G +   +       G  A ++IG                      +  R+   
Sbjct: 185 IFMLDTKGNIVTWNSGAAILKGYTAPEIIGRHFSVFYGPEDRRNGKPGRGLAVCLREGKM 244

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL 200
             +   +  +G+      ++   PIY +     GF    +           A     
Sbjct: 245 EDEGWRYRQDGS--RFWANVMITPIY-QFGRHVGF--VKVTRDLTERKAAEARMIAA 296


>gi|318606418|emb|CBY27916.1| two-component sensor protein RcsC [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 955

 Score =  274 bits (700), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 93/370 (25%), Positives = 158/370 (42%), Gaps = 29/370 (7%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFLE 502
             ++E        I+ +   GI+I+   +G  + +N                  +   L 
Sbjct: 351 ALRLEEHEQFNRKIVASAPVGISILRISDGTNILSNELA-------------HNYINLLT 397

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
                 +   + E  +  +           T     L +  +  +          + D+S
Sbjct: 398 NEDRERIMRIICEQQANFVDVM--------TSNNNNLQISFVHSRYRNEDVAICVLVDVS 449

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
              + +  L      AE+ S  KS FLA VSHE+RTPL  IIG  + +   +  P G  R
Sbjct: 450 SRVKMEESLQEMAAAAEQASQSKSMFLATVSHELRTPLYGIIGNLD-LLQTKELPHGVER 508

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                  ++ S  L+L I++D+LD SKIES ++ +     S  E ++   +       +K
Sbjct: 509 ---LVTAMNNSSGLLLKIISDILDFSKIESEQLKIEPSEFSTVEVITHITANYLPLVVKK 565

Query: 683 RILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
           R  +      ++PR++  D   ++Q+  N+L+NAI FT +G  II+         +  RV
Sbjct: 566 RFGLYCFIEADVPRLMLGDAVRLQQVISNLLNNAIKFTDTG-CIILQVRVR-GYYLEFRV 623

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
           RDTGVG+ + E+ +   PF Q+    Q   +GTGLGL + + +V+   G   + S    G
Sbjct: 624 RDTGVGINSREINQLFDPFFQVGTGVQRHFQGTGLGLAICEKLVNLMDGDVEVISELGMG 683

Query: 802 TLIEIIFPLY 811
           ++  I  PLY
Sbjct: 684 SIFAIRIPLY 693


>gi|309787597|ref|ZP_07682209.1| sensor protein evgS [Shigella dysenteriae 1617]
 gi|308925175|gb|EFP70670.1| sensor protein evgS [Shigella dysenteriae 1617]
          Length = 1139

 Score =  274 bits (700), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 89/419 (21%), Positives = 161/419 (38%), Gaps = 12/419 (2%)

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
            W+  +                  +    +        + +  +E ++    ++ ++  +
Sbjct: 470 TWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRREVIQGDLENQISFRKALSDSLPN 529

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--NTPSVMNHYLTEILSLDL 521
              ++N +G ++S N A    F          P         +  S  +    E      
Sbjct: 530 PTYVVNWQGNVISHNSAFEHYFTADYYKNAMLPLENSESPFKDVFSNTHEVTAETKENRT 589

Query: 522 RQTLEKIT-LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
             T       G  K        +        + Y     DI+E +   + L   +  A  
Sbjct: 590 IYTQVFEIDNGIEKRCINHWHTLCNLPASDHAVYICGWQDITETRDLIHALEVERNKAIN 649

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            +  KS FLA +SHEIRTP+++I+GF E++       L   + +E  +    +G  +L +
Sbjct: 650 ATVAKSQFLATMSHEIRTPISSIMGFLELLS---GSGLSKEQRVEAISLAYATGQSLLGL 706

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILA 699
           + ++LD+ KIESG   L  + V +   V          A  K I +  S        +  
Sbjct: 707 IGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPEHYLVKL 766

Query: 700 DLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMTNYELEKA 756
           D ++ KQ+  N+LSNA+ FT  G  +I  S  H  +   ++   + D+G G++  E ++ 
Sbjct: 767 DPQAFKQVLSNLLSNALKFTTEGAVKITTSLVHIDDNHAVIKMTIMDSGSGLSQEEQQQL 826

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            K + Q   S   +  G+GLGL + K ++    G   + S P  GT   I  P+  T  
Sbjct: 827 FKRYSQT--SAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVEITQQ 883


>gi|223937766|ref|ZP_03629667.1| multi-sensor signal transduction histidine kinase [bacterium
           Ellin514]
 gi|223893559|gb|EEF60019.1| multi-sensor signal transduction histidine kinase [bacterium
           Ellin514]
          Length = 552

 Score =  274 bits (700), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 75/406 (18%), Positives = 150/406 (36%), Gaps = 19/406 (4%)

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAII 468
           +     F   E+     E + +               ++E E  +         D +AI 
Sbjct: 152 SVFVQLFKKTEQIKIQAEQLRKIEEAEHQRKLAETADRLERETKRNR-FFTLAVDMLAIA 210

Query: 469 NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKI 528
           +  G IL  N +  K+ GY   ++  K     +       M   +  + +          
Sbjct: 211 DFNGYILQLNPSWEKILGYSESELKAKSGIELIHPEDHLQMIAQMESLRAGKTCS---FE 267

Query: 529 TLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN-------KLSHAKKIAEKE 581
                K+     L              +   DI+  K+ +        +L        + 
Sbjct: 268 GRYRRKDNSYCWLAWTAAPFASEKLIYIFARDITARKEAEEKIQKLNEELQGRVSALTEI 327

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
           +     F   +SH++R PL ++ GF+  +       L      ++A  I  SG  + +++
Sbjct: 328 NKELEAFNYSISHDMRAPLRSMQGFARALLEDSENKLTPASQ-DFAQRIVNSGRYMDNLL 386

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701
            DLL+ S++    M L    V ++  ++E +  V+     K+  I       +  +L+  
Sbjct: 387 QDLLEYSRL--SLMELKLCNVDMESILNEVLVHVENEIQSKKAEIIIKRP--LLPVLSHS 442

Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTS-NEEVILRVRDTGVGMTNYELEKAMKPF 760
            ++KQI  N++SNA+ F   G    I          V + ++D G+G++    EK    F
Sbjct: 443 TTLKQILSNLVSNALKFVEPGKTPRIEIWSEQIPSGVRIHIQDNGIGISPDYHEKVFGLF 502

Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
            ++ +S      GTG+GL + +  ++   G+  + S+P  G+   +
Sbjct: 503 QRLHSSHT--YPGTGIGLAIVRKGMERMGGRVGVESSPGNGSRFWL 546



 Score = 46.9 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 18/131 (13%), Positives = 39/131 (29%), Gaps = 12/131 (9%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D +GY+ +++    K +G    ++      ++             + L+   T   +   
Sbjct: 211 DFNGYILQLNPSWEKILGYSESELKAKSGIELIHPEDHLQMIAQMESLRAGKTCSFEGRY 270

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA----LGKRLDKKFS 205
              + +  Y  +   A P  S          +          +       L + L  + S
Sbjct: 271 RRKDNS--YCWLAWTAAPFASEK------LIYIFARDITARKEAEEKIQKLNEELQGRVS 322

Query: 206 HLHEIKKGHSS 216
            L EI K   +
Sbjct: 323 ALTEINKELEA 333


>gi|194365514|ref|YP_002028124.1| multi-sensor hybrid histidine kinase [Stenotrophomonas maltophilia
           R551-3]
 gi|194348318|gb|ACF51441.1| multi-sensor hybrid histidine kinase [Stenotrophomonas maltophilia
           R551-3]
          Length = 1037

 Score =  274 bits (700), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 100/531 (18%), Positives = 188/531 (35%), Gaps = 46/531 (8%)

Query: 281 NQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN 340
               ++Q    L     E+   +S R         D       E +       +    G 
Sbjct: 104 AIQARRQAMRALWLQEAENAVAMSLRGDLGPEQIADAAVTRLAEQLRADVGAVYRLEGGR 163

Query: 341 LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400
           L       L      S+   E   G     +  +    +    + L  S          L
Sbjct: 164 LQLTGGMALPSGTPASLSLQEGLAGQVARDERIRHLHGDEAAVLELQTSLGRLPVRERIL 223

Query: 401 HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEA 460
             I  +      +        +Q   +        E +   +    +  ++         
Sbjct: 224 APINSDGSVVGVIELGRARIGDQQGLDDELLERCAETIGMALRASLLRAQL--------- 274

Query: 461 TSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLD 520
               + ++                     E++  +   + +        +  L +  S  
Sbjct: 275 ----VVLLEESQR--------------QGEELQAQQEELRVANEELEEQSRSLLQSQSHL 316

Query: 521 LRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
             Q  E        EE+   L    + L  +                  +L         
Sbjct: 317 EEQQAELEQSNVQLEERTHELEAQKQALLVAQG----------------QLVRNSNELAA 360

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            S +KS+FLA +SHE+RTPL + +  ++++ + + G L     ++YA  I  S N +L +
Sbjct: 361 TSRYKSEFLANMSHELRTPLNSSLILAKLLADNKDGTLT-EEQVKYARAILSSNNDLLAL 419

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILA 699
           +ND+LD+S+IE+G + L  E V +D  +       +  A +K + +        P +++A
Sbjct: 420 INDILDLSRIEAGHVELADEVVVVDSVLQRLRETFEPMARQKGLALEIEADALAPTQLVA 479

Query: 700 DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKP 759
           D + ++QI  N+L+NA+ FT  G ++ +      N  V   V DTG+G+   +L    + 
Sbjct: 480 DNQRLQQILKNLLANALKFTEHG-KVSLHVRAGGNGRVRFDVCDTGIGIAREQLPVIFEA 538

Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           F Q   S + R  GTGLGL +++ + +   G   + S P +G+   +  PL
Sbjct: 539 FRQADGSTRRRYGGTGLGLSISRDLAERMGGSIQVDSEPGRGSCFILELPL 589


>gi|158318173|ref|YP_001510681.1| PAS/PAC sensor hybrid histidine kinase [Frankia sp. EAN1pec]
 gi|158113578|gb|ABW15775.1| PAS/PAC sensor hybrid histidine kinase [Frankia sp. EAN1pec]
          Length = 668

 Score =  274 bits (700), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 91/541 (16%), Positives = 174/541 (32%), Gaps = 84/541 (15%)

Query: 325 TVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIA--------------GGLSTL 369
            +D  P         G +   N     L  Y   + +                       
Sbjct: 12  LLDAAPDAIVGVRPDGRIALVNAQAERLFGYDRDELVGQPMEILVPEALRGAHPARRGAY 71

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
           L  P+     A   +   R D T   A   L  +                   Q  E + 
Sbjct: 72  LSDPRPRPMGAGVELAARRRDGTEFPAEISLSAV-------------------QTVEGIF 112

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
                 +    +  +            +LEA  D I  +  +G I   N    +LFGY  
Sbjct: 113 VTAAIRDVTSRKRAEA-------MFRGLLEAAPDAIVGVRPDGRIALVNAQAERLFGYDR 165

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL--EKITLGSTKEEKLLSLRIIIKK 547
           ++++ +P  + + ++   +   + T        + +          ++       I +  
Sbjct: 166 DELVGQPMEILVPESARHLHPRHRTRYFDDPRPRPMGAGMQLAARRRDGTEFPAEISLSA 225

Query: 548 LPFSSCYSLT--MHDISEWKQEKNKLSHAKKIAEK-----------ESSHKSDFLARVSH 594
           L       ++  + D+++  + + +    +  AE+                      V+H
Sbjct: 226 LETEDGLLVSAAIRDVTDRLEAQAERERLRAQAERERLEVQLHQSQRLESLGQLAGGVAH 285

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGN-----PRYIEYANYIDRSGNLVLDIVNDLLDISK 649
           +    L  II ++  +         +              + R+ +    + + LL   +
Sbjct: 286 DFNNLLAVIINYTAFVGEVVGTAARDQGGRWESARRDIEQVQRAADRAAQLTHQLLAFGR 345

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709
            E     +   P+ L+  V +   L++    E  + + TS    +  +LAD+  ++Q+ +
Sbjct: 346 RE----VVQPRPLDLNGVVHDMEQLLRRTLGEH-VELHTSAHPGLWTVLADVGQIEQVLV 400

Query: 710 NILSNAIHFTPSGGQIIISTT--------------HTSNEEVILRVRDTGVGMTNYELEK 755
           N+  NA    P GG + I T+                S   V LRV D+G GM+     +
Sbjct: 401 NLAVNARDAMPGGGTLTIDTSNVSVDDETAAAHPGLCSGRFVHLRVSDSGTGMSPEVAAR 460

Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
           A +PF         +GEG+GLGL     ++    G   I ST   GT +  + P  D + 
Sbjct: 461 AFEPFFTTKT----KGEGSGLGLATVYGIITQAGGHVEILSTANVGTTVSALLPAVDGAV 516

Query: 816 P 816
           P
Sbjct: 517 P 517



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 46/130 (35%), Gaps = 4/130 (3%)

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           S+L+A  D I  +  +G I   N    +LFGY  ++++ +P  + + +            
Sbjct: 11  SLLDAAPDAIVGVRPDGRIALVNAQAERLFGYDRDELVGQPMEILVPEALRGAHPARRGA 70

Query: 516 ILSLDLRQTLEK--ITLGSTKEEKLLSLRIIIKKLPFSSCYSLT--MHDISEWKQEKNKL 571
            LS    + +          ++       I +  +       +T  + D++  K+ +   
Sbjct: 71  YLSDPRPRPMGAGVELAARRRDGTEFPAEISLSAVQTVEGIFVTAAIRDVTSRKRAEAMF 130

Query: 572 SHAKKIAEKE 581
               + A   
Sbjct: 131 RGLLEAAPDA 140



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/270 (7%), Positives = 57/270 (21%), Gaps = 32/270 (11%)

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
                  +   G     +        +    + R  +++          + +        
Sbjct: 11  SLLDAAPDAIVGVRPDGRIALVNAQAERLFGYDR--DELVGQPMEILVPEALRGAHPARR 68

Query: 262 LTSEESSLPEQE-DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGEN 320
                   P        +   +    ++   +  ++ ++ E +               E 
Sbjct: 69  GAYLSDPRPRPMGAGVELAARRRDGTEFPAEISLSAVQTVEGIFVTAAIRDVTSRKRAEA 128

Query: 321 LTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIA--------------GG 365
           +    ++  P         G +   N     L  Y   + +                   
Sbjct: 129 MFRGLLEAAPDAIVGVRPDGRIALVNAQAERLFGYDRDELVGQPMEILVPESARHLHPRH 188

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
            +   D P+     A   +   R D T   A   L  ++      ++          +  
Sbjct: 189 RTRYFDDPRPRPMGAGMQLAARRRDGTEFPAEISLSALETEDGLLVSAAIRDVTDRLEA- 247

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLC 455
                             + + + E  +L 
Sbjct: 248 -------------QAERERLRAQAERERLE 264



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 32/397 (8%), Positives = 98/397 (24%), Gaps = 33/397 (8%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID---PNNHIGDLLKRQNTWYG-- 145
             G +  ++ +  +  G    +++G  + ++     +    P      L   +    G  
Sbjct: 25  PDGRIALVNAQAERLFGYDRDELVGQPM-EILVPEALRGAHPARRGAYLSDPRPRPMGAG 83

Query: 146 -KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            +      +GT    P +++   + +    F        +          A+ + L +  
Sbjct: 84  VELAARRRDGT--EFPAEISLSAVQTVEGIFVTAA----IRDVTSRKRAEAMFRGLLEAA 137

Query: 205 SHL---HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPL 261
                        + V  +   +F         +    +   +  + H     +    P 
Sbjct: 138 PDAIVGVRPDGRIALVNAQAERLFGYDRDELVGQPMEILVPESARHLHPRHRTRYFDDPR 197

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
                +    Q      +  ++  +     L+                 L A  +     
Sbjct: 198 PRPMGA--GMQLAARRRDGTEFPAEISLSALETEDGLLVSAAIRDVTDRLEAQAERERLR 255

Query: 322 TPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAI 381
                ++  +           + +     L +       +    L+ +++          
Sbjct: 256 AQAERERLEV---------QLHQSQRLESLGQLAGGVAHDFNNLLAVIINYTAFVGEVVG 306

Query: 382 KPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
                        +A   +  +Q   + +  +T        +         +     D  
Sbjct: 307 TAA--RDQGGRWESARRDIEQVQRAADRAAQLTHQLLAFGRREVVQPRPLDLNGVVHDME 364

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINRE-GIILST 477
              R+   E ++L +   +   G+  +  + G I   
Sbjct: 365 QLLRRTLGEHVELHT---SAHPGLWTVLADVGQIEQV 398


>gi|126440163|ref|YP_001058534.1| phosphate regulon sensor protein PhoR [Burkholderia pseudomallei
           668]
 gi|167719074|ref|ZP_02402310.1| histidine protein kinase PhoR [Burkholderia pseudomallei DM98]
 gi|126219656|gb|ABN83162.1| phosphate regulon sensor protein PhoR [Burkholderia pseudomallei
           668]
          Length = 436

 Score =  274 bits (700), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 76/411 (18%), Positives = 151/411 (36%), Gaps = 35/411 (8%)

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT-----RINKRKMEIEVMQLCSILEATS 462
                   +      + P      G     +           R++E +  +    ++A+ 
Sbjct: 49  HTQRLWRLLDAPVYGEVPSAPGIWGEIYYRLHKLAKQWHAQVRQVEQQHSRFIQAIQASP 108

Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522
           +G+A+++    I   N      FG   +  LR+  T  +         +           
Sbjct: 109 NGVAMLDDRDQIEWCNAIAEVHFGLDAKRDLRQHVTHLVRHPDFVRYLN----------G 158

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES 582
           Q  ++  +         ++  +       +   L   DI+E ++                
Sbjct: 159 QHYDETLVMRGMGGNRQNVLAVQVFPYGENRKLLLTQDITELERT--------------D 204

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
           + + DF+A VSHE++TPLT + GF E ++     PL +     Y   +++  + +  IV 
Sbjct: 205 AMRRDFVANVSHELKTPLTVLSGFLETMRE---LPLSDDERARYLELMEQQASRMRHIVT 261

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702
           DLL ++K+E          V +   +       Q  +      I       +  +     
Sbjct: 262 DLLVLAKLEGESKPPADRAVDMRTVLDHLRDDAQTLSGGHH-EITFKVDETL-AVTGAQT 319

Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
            +     N+++NAI +TP GG I +        + +  V D+G+G+   EL +  + F +
Sbjct: 320 EIFSALGNLVTNAIRYTPEGGTIRVEWR-RDGAQAVFSVTDSGLGIPAAELPRLTERFYR 378

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
           +  S+     GTGLGL + K ++  +  +  I S   +G+     FP + T
Sbjct: 379 VDRSRSRDTGGTGLGLAIVKHVLQRHDAQLSIQSEEGRGSTFTARFPAHRT 429


>gi|324324689|gb|ADY19949.1| sensor histidine kinase [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 463

 Score =  274 bits (700), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 55/226 (24%), Positives = 108/226 (47%), Gaps = 5/226 (2%)

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
            +S+FLA V+HE+RTPLT + G++++   +   P    + + Y + I    + + ++V D
Sbjct: 234 ERSEFLASVAHELRTPLTYVRGYADIALKETTSP---EQRLRYLSIIKDESDYITNLVQD 290

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703
           L  ++++E    ++  + V L   ++     V     E+ I +  S    +  +  D + 
Sbjct: 291 LFSLAQMEQHNFSIQVKEVHLHTFLTRISEKVNAMYKERYITVSFSCPPTLL-VNLDEQR 349

Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
            +Q+ +NIL+NA   +     I IS     N+ + + + D G G+   +L    + F ++
Sbjct: 350 FEQVVVNILNNAYRHSKEHSHIRISV-IEENKRITITIEDEGEGIPPEDLPHIFERFYRV 408

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             ++     GTGLGL + K +V+ + G   + S    G+   I  P
Sbjct: 409 DKARSRATGGTGLGLSIVKEIVELHGGTITVTSEVDHGSCFIISLP 454


>gi|262406077|ref|ZP_06082627.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294648144|ref|ZP_06725687.1| PAS domain S-box [Bacteroides ovatus SD CC 2a]
 gi|294806365|ref|ZP_06765209.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b]
 gi|262356952|gb|EEZ06042.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292636528|gb|EFF55003.1| PAS domain S-box [Bacteroides ovatus SD CC 2a]
 gi|294446433|gb|EFG15056.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b]
          Length = 396

 Score =  274 bits (700), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 85/376 (22%), Positives = 156/376 (41%), Gaps = 31/376 (8%)

Query: 450 EVMQLC-----SILEATSDGIAIINREGIILST--NRAVSKLFGYPVEDILRKPFTVFLE 502
              +        IL+A  D + + + +  I+    + A + + G    +I        L 
Sbjct: 34  SQERFRDKYSTRILDALPDMLTVFDHDANIIELASSPATNHVEGINASNITTTNVKDILP 93

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDIS 562
           +     +   + +++      T     +    +  L      I  L  +        DIS
Sbjct: 94  EEAYESVRKNMDKVILTGESSTARHDLML---DGVLHHYENRIFPL-DNKYLLCMCRDIS 149

Query: 563 EWKQEKN-------KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
           +  + +        +L  A+  AE+    KS FLA +SHEIRTPL AI+GFS++I     
Sbjct: 150 QQWEAEQTNAQQQKELKAARVKAEESDRLKSAFLANMSHEIRTPLNAIVGFSKLI----T 205

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
                    +YA  I+R+  ++L++ ND+LD+S +E+  +  +  P+ L +   +     
Sbjct: 206 FATSTEEKNQYAEIIERNSEMLLNLFNDILDLSSLEADSLKFNIRPIKLTDICLQLKQQF 265

Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS-N 734
                +  + +     +       D   + QI  N+LSNA  FTP G    I   +    
Sbjct: 266 CHK-TQNGVKLILDDVDADMYASGDWNRIIQIISNLLSNATKFTPKG---EIHFGYREKE 321

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
           + V   V+D+G+G+    +    + FG++        +GTGLGL L + +V+   G+ ++
Sbjct: 322 DFVEFYVKDSGIGIPAERVATIFRRFGKV----NDFVQGTGLGLTLCRMLVEKMGGRIWL 377

Query: 795 FSTPAKGTLIEIIFPL 810
            S   +G+      PL
Sbjct: 378 RSQEGQGSRFYFTLPL 393


>gi|144900203|emb|CAM77067.1| CheB methylesterase:MCP methyltransferase, CheR-type
            [Magnetospirillum gryphiswaldense MSR-1]
          Length = 1325

 Score =  274 bits (700), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 81/499 (16%), Positives = 177/499 (35%), Gaps = 29/499 (5%)

Query: 318  GENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDI-EIAGGLSTLLDAPKL 375
             E      +D  P    V    G +   N ++     + + + I     G+         
Sbjct: 844  AERRLQMYLDSLPYEMAVLEKDGQISLVNAAWR---GFAAANGINPERVGVGCNYFGVCR 900

Query: 376  SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
            + +   + +              R  +            +  F       ++        
Sbjct: 901  ATDGPDRALAETAEAGVRAVLEGRAPSFMLEYPCHSPNEYRWFMMNAGPTDSGGAVVSHI 960

Query: 436  EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
               D +  + K+ +      S+ E + + I I + +  I+S N A  ++ GY  +DIL K
Sbjct: 961  NITDRKRGEEKLRLA----ASVFECSGEAILIADSDERIISVNPAFVEMTGYQPQDILGK 1016

Query: 496  PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC-- 553
                           H + +   L  R           +  ++    + I  +       
Sbjct: 1017 TPRTLASGRHDHSFYHAMWD--ELRTRGIWRGEVWNRRRNGQVYPEWLTISAVKNQMGSI 1074

Query: 554  --YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
              Y     DISE K  + +L          ++    F    SH++R PL  +  +   + 
Sbjct: 1075 LNYVAVFTDISERKAAEQRLMDI-------NAELEQFAYVASHDLREPLRMVNSYL-TLI 1126

Query: 612  NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
             +R G   +    E+  +       +  ++  LL+ S+I  G+M+     +S++E ++  
Sbjct: 1127 ERRLGERLDAETQEFMRFATDGAKRMDSLILHLLEYSRI--GRMSSPSRLISINELLAPF 1184

Query: 672  ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
            ++ +    ++++  I  S       +        ++  N++ NA+ +        I+ T 
Sbjct: 1185 MAGLMPMQDQRQGEITVS--GGECSVFVHESECTRLFQNVIGNALKYCDPDQNPRITITC 1242

Query: 732  TSNEE-VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
             +  E V++ V D G+G+   + +K  + F ++   ++  G GTG+GL + K +V+ + G
Sbjct: 1243 QNTGEFVLVAVADNGIGIAMDQQDKVFRMFQRLHP-REAYGGGTGIGLAVCKKIVENHGG 1301

Query: 791  KFYIFSTPAKGTLIEIIFP 809
            + +  S   +G       P
Sbjct: 1302 RMWFESRAGEGATFYFTLP 1320



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 19/220 (8%), Positives = 54/220 (24%), Gaps = 11/220 (5%)

Query: 90   DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP-NNHIGDLLKRQNTWYGKTT 148
            D+   +  ++    +  G     ++G     ++   H     + + D L+ +  W G+  
Sbjct: 990  DSDERIISVNPAFVEMTGYQPQDILGKTPRTLASGRHDHSFYHAMWDELRTRGIWRGEVW 1049

Query: 149  LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALG----KRLDKKF 204
                 G      + ++A  + ++      +    +                    L++  
Sbjct: 1050 NRRRNGQVYPEWLTISA--VKNQMGSILNY--VAVFTDISERKAAEQRLMDINAELEQFA 1105

Query: 205  SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
                   +    +      +  ++          +        A + D L          
Sbjct: 1106 YVASHDLREPLRMVNSYLTLIERRLGERLDAETQEFMRFATDGAKRMDSLILHLLEYSRI 1165

Query: 265  EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
               S P +     IN            +Q+  +       
Sbjct: 1166 GRMSSPSRLIS--INELLAPFMAGLMPMQDQRQGEITVSG 1203


>gi|82779496|ref|YP_405845.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Shigella dysenteriae Sd197]
 gi|81243644|gb|ABB64354.1| putative sensor for regulator EvgA [Shigella dysenteriae Sd197]
          Length = 1197

 Score =  274 bits (700), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 89/419 (21%), Positives = 161/419 (38%), Gaps = 12/419 (2%)

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
            W+  +                  +    +        + +  +E ++    ++ ++  +
Sbjct: 528 TWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRREVIQGDLENQISFRKALSDSLPN 587

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--NTPSVMNHYLTEILSLDL 521
              ++N +G ++S N A    F          P         +  S  +    E      
Sbjct: 588 PTYVVNWQGNVISHNSAFEHYFTADYYKNEMLPLENSESPFKDVFSNTHEVTAETKENRT 647

Query: 522 RQTLEKIT-LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
             T       G  K        +        + Y     DI+E +   + L   +  A  
Sbjct: 648 IYTQVFEIDNGIEKRCINHWHTLCNLPASDHAVYICGWQDITETRDLIHALEVERNKAIN 707

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            +  KS FLA +SHEIRTP+++I+GF E++       L   + +E  +    +G  +L +
Sbjct: 708 ATVAKSQFLATMSHEIRTPISSIMGFLELLS---GSGLSKEQRVEAISLAYATGQSLLGL 764

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILA 699
           + ++LD+ KIESG   L  + V +   V          A  K I +  S        +  
Sbjct: 765 IGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPEHYLVKL 824

Query: 700 DLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMTNYELEKA 756
           D ++ KQ+  N+LSNA+ FT  G  +I  S  H  +   ++   + D+G G++  E ++ 
Sbjct: 825 DPQAFKQVLSNLLSNALKFTTEGAVKITTSLVHIDDNHAVIKMTIMDSGSGLSQEEQQQL 884

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            K + Q   S   +  G+GLGL + K ++    G   + S P  GT   I  P+  T  
Sbjct: 885 FKRYSQT--SAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVEITQQ 941


>gi|256379099|ref|YP_003102759.1| GAF sensor hybrid histidine kinase [Actinosynnema mirum DSM 43827]
 gi|255923402|gb|ACU38913.1| GAF sensor hybrid histidine kinase [Actinosynnema mirum DSM 43827]
          Length = 1479

 Score =  274 bits (700), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 84/301 (27%), Positives = 147/301 (48%), Gaps = 4/301 (1%)

Query: 515  EILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHA 574
            E+ S           L   KE   +++  +       S    +     E +    +L   
Sbjct: 1018 ELASFGEFGHGHLDLLDQLKENIGVNVNTMQANARTDSLLVESQRLTEELRAGSVELEDR 1077

Query: 575  KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
             +     S +KS+F+A +SHE+RTPL +++  ++++ +   G L NP+ +E+A  I  SG
Sbjct: 1078 ARQLSSASKYKSEFMANMSHELRTPLNSLLILAKLLTDNLDGNL-NPKQVEFARTIHSSG 1136

Query: 635  NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
              +L +++D+LD++K+ESG M +  +PV + + V    SL    A EK +    S   ++
Sbjct: 1137 TDLLQLIDDILDLTKVESGHMQVQTDPVRVSDVVGYVESLTLPLAAEKGLGFDVSVQPDV 1196

Query: 695  P-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYEL 753
            P  +  D   ++QI  N+LSNA+ FT  G +I +    T+   V   V+DTG+G+   +L
Sbjct: 1197 PSTLHTDEHRLQQILRNLLSNAVKFTHEG-EIRLRIR-TAGPSVAFDVQDTGIGIPAEKL 1254

Query: 754  EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
                + F Q   +   +  GTGLGL +++ +     G+  + S P  G+   +  PL D 
Sbjct: 1255 SVIFEAFQQADGTTSRKYGGTGLGLSISRELSALLEGRLDVRSEPGFGSTFTLYLPLGDQ 1314

Query: 814  S 814
            S
Sbjct: 1315 S 1315


>gi|260551959|ref|ZP_05825821.1| sensor protein gacS [Acinetobacter sp. RUH2624]
 gi|260405362|gb|EEW98857.1| sensor protein gacS [Acinetobacter sp. RUH2624]
          Length = 935

 Score =  274 bits (700), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 82/258 (31%), Positives = 136/258 (52%), Gaps = 19/258 (7%)

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
           +  A   +  KS FLA +SHE+RTPL +I GF  ++  Q+   L N + + Y   I +S 
Sbjct: 280 RDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQ--NLSNEQNL-YLQTIRKSS 336

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
             +L ++ND+LD SKI++GK+ L   P  L+EA+ + + ++   A +K I +   +A+NI
Sbjct: 337 AHLLALINDVLDFSKIDAGKLELETAPFDLEEAIFDVMDMLSPLAAQKHIAMAFYYADNI 396

Query: 695 P-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILRVRDTGVGMT 749
           P  ++ D    KQI  N++SNAI FTP G +II+      ++     +   V+D+G+G++
Sbjct: 397 PQEVIGDALRFKQILTNLISNAIKFTPDG-EIIVRVRMEHDDIGQCLLHFSVQDSGIGLS 455

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP-----AKGTLI 804
             + +K  + F Q   S   +  GTGLGL ++K +V    G+             KG+  
Sbjct: 456 GTDRKKLFESFSQGDASVTRQFGGTGLGLAISKQLVHLMHGQIGFEDNQERAPTEKGSTF 515

Query: 805 EII--FPL---YDTSHPH 817
                F +   ++  HPH
Sbjct: 516 WFTAQFAVDEEHEIEHPH 533


>gi|239982665|ref|ZP_04705189.1| two-component system sensor kinase [Streptomyces albus J1074]
          Length = 1798

 Score =  274 bits (700), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 103/657 (15%), Positives = 221/657 (33%), Gaps = 51/657 (7%)

Query: 186  VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE 245
                  D  A G+ L+   + ++ +    SS  ++   +  +      L  + +V  +  
Sbjct: 950  DLTKKIDIDARGEILE-LKTTINTMVDQLSSFAEQVTRVAREVGTEGQLGGQARVRDVDG 1008

Query: 246  YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
             +    + +      L     +           +L         G +Q         +++
Sbjct: 1009 TWRDLTESVNEMAQNLTRQVRAIAAVATAVTRGDLQLKIDVDAAGEIQALQDNINTMITN 1068

Query: 306  RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365
                +L+    +        +                 A+     LT   S      A  
Sbjct: 1069 LRDTTLANKEQDWLKGNLARISGLMQG----RRDLTDVASLIMSELTPVVSAQ--HGAFF 1122

Query: 366  LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
            ++   +        A +     R   +   +   + T     E+ +              
Sbjct: 1123 IAAPTEEDPDLSAEARENAYELRMIGSYGYSMGSMPTAFKPGESLIGAAAQEKRTILVDH 1182

Query: 426  ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
                   I     +       +      L  + E T  G+  +          R      
Sbjct: 1183 VPSGYLKIASGLGEAPPAHVIV------LPLLFEGTVLGVIELAAFQQFTHIQRDFLSQL 1236

Query: 486  GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
                 +++               +     E+      ++ E             +L+   
Sbjct: 1237 ----AEMIATSVNTISVNTKTEELLKQSQELTEQLRDRSEELEVRQK-------ALQASN 1285

Query: 546  KKLPFSSCYSLT-MHDI----SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
             +L   +        DI    +E +  +  L    +       +KS+FLA +SHE+RTPL
Sbjct: 1286 AELEDKAELLARQNRDIEVKNTEIEDARQVLEERAEQLAVSMRYKSEFLANMSHELRTPL 1345

Query: 601  TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
             +++  ++++ +   G L  P+ +E+A  I  +G+ +L ++ND+LD+SK+E+GKM++   
Sbjct: 1346 NSLLILAKLLADNAEGNLS-PKQVEFAETIHGAGSDLLQLINDILDLSKVEAGKMDVSPT 1404

Query: 661  PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFT 719
             ++L + V    +  +    EK +      +  +P  +  D + + Q+  N+LSNA+ FT
Sbjct: 1405 RIALVQLVDYVEATFRPLTAEKGLDFSVRVSPELPATLHTDEQRLLQVLRNLLSNAVKFT 1464

Query: 720  PSGGQIII--------------------STTHTSNEEVILRVRDTGVGMTNYELEKAMKP 759
             SG   ++                    S      + +   V DTG+G+ + ++    + 
Sbjct: 1465 DSGAVELVIRPAAADVPDAIREQLLEAGSLADADADLIAFSVTDTGIGIASGKMRVIFEA 1524

Query: 760  FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
            F Q   +   +  GTGLGL +++ +     G+ +  S P +G+   +  PL+    P
Sbjct: 1525 FKQADGTTSRKYGGTGLGLSISREIARLLGGEIHAASEPGRGSTFTLYLPLHPAELP 1581


>gi|53719004|ref|YP_107990.1| putative phosphate regulon two-component system sensor kinase
           [Burkholderia pseudomallei K96243]
 gi|53725529|ref|YP_102548.1| histidine protein kinase PhoR [Burkholderia mallei ATCC 23344]
 gi|67641079|ref|ZP_00439865.1| phosphate regulon sensor kinase PhoR [Burkholderia mallei GB8 horse
           4]
 gi|121598560|ref|YP_992632.1| histidine protein kinase PhoR [Burkholderia mallei SAVP1]
 gi|126449196|ref|YP_001080149.1| histidine protein kinase PhoR [Burkholderia mallei NCTC 10247]
 gi|167002166|ref|ZP_02267956.1| phosphate regulon sensor kinase PhoR [Burkholderia mallei PRL-20]
 gi|167815256|ref|ZP_02446936.1| histidine protein kinase PhoR [Burkholderia pseudomallei 91]
 gi|167893761|ref|ZP_02481163.1| histidine protein kinase PhoR [Burkholderia pseudomallei 7894]
 gi|167902209|ref|ZP_02489414.1| histidine protein kinase PhoR [Burkholderia pseudomallei NCTC
           13177]
 gi|167910451|ref|ZP_02497542.1| histidine protein kinase PhoR [Burkholderia pseudomallei 112]
 gi|167918477|ref|ZP_02505568.1| histidine protein kinase PhoR [Burkholderia pseudomallei BCC215]
 gi|237811788|ref|YP_002896239.1| phosphate regulon sensor kinase PhoR [Burkholderia pseudomallei
           MSHR346]
 gi|254188386|ref|ZP_04894897.1| phosphate regulon sensor protein PhoR [Burkholderia pseudomallei
           Pasteur 52237]
 gi|52209418|emb|CAH35363.1| putative phosphate regulon two-component system sensor kinase
           [Burkholderia pseudomallei K96243]
 gi|52428952|gb|AAU49545.1| histidine protein kinase PhoR [Burkholderia mallei ATCC 23344]
 gi|121227370|gb|ABM49888.1| histidine protein kinase PhoR [Burkholderia mallei SAVP1]
 gi|126242066|gb|ABO05159.1| histidine protein kinase PhoR [Burkholderia mallei NCTC 10247]
 gi|157936065|gb|EDO91735.1| phosphate regulon sensor protein PhoR [Burkholderia pseudomallei
           Pasteur 52237]
 gi|237506194|gb|ACQ98512.1| phosphate regulon sensor kinase PhoR [Burkholderia pseudomallei
           MSHR346]
 gi|238521935|gb|EEP85383.1| phosphate regulon sensor kinase PhoR [Burkholderia mallei GB8 horse
           4]
 gi|243062153|gb|EES44339.1| phosphate regulon sensor kinase PhoR [Burkholderia mallei PRL-20]
          Length = 436

 Score =  274 bits (700), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 76/411 (18%), Positives = 151/411 (36%), Gaps = 35/411 (8%)

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT-----RINKRKMEIEVMQLCSILEATS 462
                   +      + P      G     +           R++E +  +    ++A+ 
Sbjct: 49  HTQRLWRLLDAPVYGEVPSAPGIWGEIYYRLHKLAKQWHAQVRQVEQQHSRFIQAIQASP 108

Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522
           +G+A+++    I   N      FG   +  LR+  T  +         +           
Sbjct: 109 NGVAMLDDRDQIEWCNAIAEVHFGLDAKRDLRQHVTHLVRHPDFVRYLN----------G 158

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES 582
           Q  ++  +         ++  +       +   L   DI+E ++                
Sbjct: 159 QHYDETLVMRGMGGNRQNVLAVQVFPYGENRKLLLTQDITELERT--------------D 204

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
           + + DF+A VSHE++TPLT + GF E ++     PL +     Y   +++  + +  IV 
Sbjct: 205 AMRRDFVANVSHELKTPLTVLSGFLETMRE---LPLSDDERARYLELMEQQASRMRHIVT 261

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702
           DLL ++K+E          V +   +       Q  +      I       +  +     
Sbjct: 262 DLLVLAKLEGESKPPADRAVDMRTVLDHLRDDAQTLSGGHH-EITFKVDETL-AVTGAQT 319

Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
            +     N+++NAI +TP GG I +        + +  V D+G+G+   EL +  + F +
Sbjct: 320 EIFSALGNLVTNAIRYTPEGGTIRVEWR-RDGAQAVFSVTDSGLGIPAAELPRLTERFYR 378

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
           +  S+     GTGLGL + K ++  +  +  I S   +G+     FP + T
Sbjct: 379 VDRSRSRDTGGTGLGLAIVKHVLQRHDAQLSIQSEEGRGSTFTARFPAHRT 429


>gi|308125497|ref|ZP_07663416.1| hybrid signal transduction histidine kinase J [Vibrio
           parahaemolyticus K5030]
 gi|308112027|gb|EFO49567.1| hybrid signal transduction histidine kinase J [Vibrio
           parahaemolyticus K5030]
          Length = 381

 Score =  274 bits (700), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 64/227 (28%), Positives = 111/227 (48%), Gaps = 9/227 (3%)

Query: 592 VSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIE 651
           +SHEIRTP+ A  G + ++ + +     +P+  E+   ID S   ++ I++D+LD SK+E
Sbjct: 1   MSHEIRTPMNA-YGVASLLSDTKL----DPQQKEFVEIIDNSSQSLMTIIDDILDFSKVE 55

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALN 710
           +GK+ L  E     + + + ISL  + A +K + + +     +P  +  D   +KQ+  N
Sbjct: 56  AGKVELASETYHFRQLLDDVISLHTVKAQQKNLQLLSDIDPKLPAEVQGDEGRLKQVLNN 115

Query: 711 ILSNAIHFTPSGGQ---IIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQ 767
           +LSNA+ FT  G     + +   +    +V  RV D+G+G+     +   + F Q   S 
Sbjct: 116 LLSNAVKFTERGHVKLLVSLHEQNNDIAQVRFRVVDSGIGIAKEHQQAVFERFQQADGST 175

Query: 768 QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
             +  GTGLGL +   +V    G   + S    G+  +   PL   S
Sbjct: 176 TRKYGGTGLGLAICAQLVHIMGGDIKLTSELGLGSCFDFTIPLTVVS 222


>gi|257425614|ref|ZP_05602038.1| sensor protein srrB [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257428275|ref|ZP_05604673.1| sensor protein srrB [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257430912|ref|ZP_05607292.1| sensor protein srrB [Staphylococcus aureus subsp. aureus 68-397]
 gi|257433601|ref|ZP_05609959.1| sensor protein srrB [Staphylococcus aureus subsp. aureus E1410]
 gi|257436514|ref|ZP_05612558.1| sensor protein srrB [Staphylococcus aureus subsp. aureus M876]
 gi|282904071|ref|ZP_06311959.1| sensor protein SrrB [Staphylococcus aureus subsp. aureus C160]
 gi|282905898|ref|ZP_06313753.1| sensor protein srrB [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282908808|ref|ZP_06316626.1| sensor protein srrB [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282911127|ref|ZP_06318929.1| sensor protein srrB [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282914296|ref|ZP_06322082.1| sensor protein SrrB [Staphylococcus aureus subsp. aureus M899]
 gi|282919265|ref|ZP_06327000.1| sensor protein srrB [Staphylococcus aureus subsp. aureus C427]
 gi|282924590|ref|ZP_06332258.1| sensor protein srrB [Staphylococcus aureus subsp. aureus C101]
 gi|283958253|ref|ZP_06375704.1| sensor protein SrrB [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|293503373|ref|ZP_06667220.1| sensor protein srrB [Staphylococcus aureus subsp. aureus 58-424]
 gi|293510388|ref|ZP_06669094.1| sensor protein srrB [Staphylococcus aureus subsp. aureus M809]
 gi|293530927|ref|ZP_06671609.1| sensor protein SrrB [Staphylococcus aureus subsp. aureus M1015]
 gi|257271308|gb|EEV03454.1| sensor protein srrB [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257275116|gb|EEV06603.1| sensor protein srrB [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257278342|gb|EEV08978.1| sensor protein srrB [Staphylococcus aureus subsp. aureus 68-397]
 gi|257281694|gb|EEV11831.1| sensor protein srrB [Staphylococcus aureus subsp. aureus E1410]
 gi|257283865|gb|EEV13988.1| sensor protein srrB [Staphylococcus aureus subsp. aureus M876]
 gi|282313425|gb|EFB43820.1| sensor protein srrB [Staphylococcus aureus subsp. aureus C101]
 gi|282317075|gb|EFB47449.1| sensor protein srrB [Staphylococcus aureus subsp. aureus C427]
 gi|282321477|gb|EFB51802.1| sensor protein SrrB [Staphylococcus aureus subsp. aureus M899]
 gi|282324822|gb|EFB55132.1| sensor protein srrB [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282327072|gb|EFB57367.1| sensor protein srrB [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282331190|gb|EFB60704.1| sensor protein srrB [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282595689|gb|EFC00653.1| sensor protein SrrB [Staphylococcus aureus subsp. aureus C160]
 gi|283790402|gb|EFC29219.1| sensor protein SrrB [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|290920195|gb|EFD97261.1| sensor protein SrrB [Staphylococcus aureus subsp. aureus M1015]
 gi|291095039|gb|EFE25304.1| sensor protein srrB [Staphylococcus aureus subsp. aureus 58-424]
 gi|291466752|gb|EFF09272.1| sensor protein srrB [Staphylococcus aureus subsp. aureus M809]
          Length = 582

 Score =  274 bits (700), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 61/375 (16%), Positives = 151/375 (40%), Gaps = 39/375 (10%)

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
            +   +   +        S++ +  +G+  IN    I+ +N+  + +             
Sbjct: 241 TEIEEHVDALSTSKNIRDSLINSMVEGVLGINESRQIILSNKMANDIMD----------- 289

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK---KLPFSSCY 554
              ++++  + +   + +       +  +          +   +        +    S  
Sbjct: 290 --NIDEDAKAFLLRQIEDTFKSKQTEMRDLEM-----NTRFFVVTTSYIDKIEQGGKSGV 342

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
            +T+ D++                      K DF+A VSHE+RTP++ + G++E I +  
Sbjct: 343 VVTVRDMT--------------NEHNLDQMKKDFIANVSHELRTPISLLQGYTESIVDGI 388

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     E    +      +  +VN+LL+++++++  ++++ E   +   + +    
Sbjct: 389 VTE--PDEIKESLAIVLDESKRLNRLVNELLNVARMDAEGLSVNKEVQPIAALLDKMKIK 446

Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
            +  A++  + +  ++         D+  + Q+  N++ NA  +T  G +I I+     +
Sbjct: 447 YRQQADDLGLNMTFNYCKKRVWTY-DMDRMDQVLTNLIDNASRYTKPGDEIAITCDENES 505

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
           E++ L ++DTG G+    L++    F ++  ++    +GTGLGL + K +++ + G   +
Sbjct: 506 EDI-LYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQGTGLGLFICKMIIEEHGGSIDV 564

Query: 795 FSTPAKGTLIEIIFP 809
            S   KGT   I  P
Sbjct: 565 KSELGKGTTFIIKLP 579


>gi|297590965|ref|ZP_06949603.1| sensor histidine kinase SrrB [Staphylococcus aureus subsp. aureus
           MN8]
 gi|76363428|sp|Q6GGK7|SRRB_STAAR RecName: Full=Sensor protein srrB; AltName: Full=Staphylococcal
           respiratory response protein B
 gi|297575851|gb|EFH94567.1| sensor histidine kinase SrrB [Staphylococcus aureus subsp. aureus
           MN8]
 gi|312438041|gb|ADQ77112.1| sensor histidine kinase SrrB [Staphylococcus aureus subsp. aureus
           TCH60]
 gi|315195388|gb|EFU25775.1| sensor kinase protein [Staphylococcus aureus subsp. aureus CGS00]
          Length = 583

 Score =  274 bits (700), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 61/375 (16%), Positives = 151/375 (40%), Gaps = 39/375 (10%)

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
            +   +   +        S++ +  +G+  IN    I+ +N+  + +             
Sbjct: 242 TEIEEHVDALSTSKNIRDSLINSMVEGVLGINESRQIILSNKMANDIMD----------- 290

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK---KLPFSSCY 554
              ++++  + +   + +       +  +          +   +        +    S  
Sbjct: 291 --NIDEDAKAFLLRQIEDTFKSKQTEMRDLEM-----NTRFFVVTTSYIDKIEQGGKSGV 343

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
            +T+ D++                      K DF+A VSHE+RTP++ + G++E I +  
Sbjct: 344 VVTVRDMT--------------NEHNLDQMKKDFIANVSHELRTPISLLQGYTESIVDGI 389

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     E    +      +  +VN+LL+++++++  ++++ E   +   + +    
Sbjct: 390 VTE--PDEIKESLAIVLDESKRLNRLVNELLNVARMDAEGLSVNKEVQPIAALLDKMKIK 447

Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
            +  A++  + +  ++         D+  + Q+  N++ NA  +T  G +I I+     +
Sbjct: 448 YRQQADDLGLNMTFNYCKKRVWTY-DMDRMDQVLTNLIDNASRYTKPGDEIAITCDENES 506

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
           E++ L ++DTG G+    L++    F ++  ++    +GTGLGL + K +++ + G   +
Sbjct: 507 EDI-LYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQGTGLGLFICKMIIEEHGGSIDV 565

Query: 795 FSTPAKGTLIEIIFP 809
            S   KGT   I  P
Sbjct: 566 KSELGKGTTFIIKLP 580


>gi|49483741|ref|YP_040965.1| sensor kinase protein [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49241870|emb|CAG40563.1| sensor kinase protein [Staphylococcus aureus subsp. aureus MRSA252]
          Length = 588

 Score =  274 bits (700), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 61/375 (16%), Positives = 151/375 (40%), Gaps = 39/375 (10%)

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
            +   +   +        S++ +  +G+  IN    I+ +N+  + +             
Sbjct: 247 TEIEEHVDALSTSKNIRDSLINSMVEGVLGINESRQIILSNKMANDIMD----------- 295

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK---KLPFSSCY 554
              ++++  + +   + +       +  +          +   +        +    S  
Sbjct: 296 --NIDEDAKAFLLRQIEDTFKSKQTEMRDLEM-----NTRFFVVTTSYIDKIEQGGKSGV 348

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
            +T+ D++                      K DF+A VSHE+RTP++ + G++E I +  
Sbjct: 349 VVTVRDMT--------------NEHNLDQMKKDFIANVSHELRTPISLLQGYTESIVDGI 394

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     E    +      +  +VN+LL+++++++  ++++ E   +   + +    
Sbjct: 395 VTE--PDEIKESLAIVLDESKRLNRLVNELLNVARMDAEGLSVNKEVQPIAALLDKMKIK 452

Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
            +  A++  + +  ++         D+  + Q+  N++ NA  +T  G +I I+     +
Sbjct: 453 YRQQADDLGLNMTFNYCKKRVWTY-DMDRMDQVLTNLIDNASRYTKPGDEIAITCDENES 511

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
           E++ L ++DTG G+    L++    F ++  ++    +GTGLGL + K +++ + G   +
Sbjct: 512 EDI-LYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQGTGLGLFICKMIIEEHGGSIDV 570

Query: 795 FSTPAKGTLIEIIFP 809
            S   KGT   I  P
Sbjct: 571 KSELGKGTTFIIKLP 585


>gi|299134016|ref|ZP_07027209.1| integral membrane sensor signal transduction histidine kinase
           [Afipia sp. 1NLS2]
 gi|298590763|gb|EFI50965.1| integral membrane sensor signal transduction histidine kinase
           [Afipia sp. 1NLS2]
          Length = 433

 Score =  274 bits (700), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 77/377 (20%), Positives = 161/377 (42%), Gaps = 31/377 (8%)

Query: 444 KRKMEIEVMQL------CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
           + + E    +L       +++ A  +   +++R G +L  N   ++L      + L    
Sbjct: 69  RAREESGSERLTEGVAVRAVIGAMPEPTVLLDRVGRVLHLNAQAAQLAPALRRNELA--L 126

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT 557
                    +V+   +  +    +    E++ +    E  +  + +  +     +C+ +T
Sbjct: 127 FALRSPEIIAVLRDAIATLQPQRVTYV-ERVPVERWMELVVTPVAVPTEFGGTDNCFLMT 185

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
             D +  ++ +                ++DF+A  SHE+RTPL A+ GF + ++      
Sbjct: 186 FRDQTPLRRAEE--------------MRADFVANASHELRTPLAALSGFIDTLQ---GPA 228

Query: 618 LGNPRYIE-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
             +P+  E +   +      +  +++DLL +S++E          V L   + + I  ++
Sbjct: 229 RDDPKARERFLGIMHAQATRMARLIDDLLSLSRVELSAHVRPEAKVDLLAILRQVIDGLE 288

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
           + ANE+ ++I T F +    I  D   + ++  N++ N + +  SGG++ +S + T+ +E
Sbjct: 289 VLANERGVVIETQFPDVPVFIAGDTEELLRVFENLIENGLKYGASGGRVTVSLSRTAPDE 348

Query: 737 ----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
               + + VRD G G+    L +  + F +          GTGLGL L K +V  + G+ 
Sbjct: 349 GPAEIRVTVRDYGPGIAPEHLPRLTERFYRTDVGDSRAQGGTGLGLSLVKHIVSRHGGRL 408

Query: 793 YIFSTPAKGTLIEIIFP 809
            I S   KG    + FP
Sbjct: 409 LIESVFGKGATFTVCFP 425


>gi|254514189|ref|ZP_05126250.1| phosphate regulon sensor kinase PhoR [gamma proteobacterium NOR5-3]
 gi|219676432|gb|EED32797.1| phosphate regulon sensor kinase PhoR [gamma proteobacterium NOR5-3]
          Length = 425

 Score =  274 bits (700), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 79/371 (21%), Positives = 159/371 (42%), Gaps = 31/371 (8%)

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
            + R  + +++  V  L S   +  DG+ I+ + G I  +N A  +L G        +P 
Sbjct: 83  RENREARGRLQSTVDYLRSSFASMHDGVLILTQSGAIEWSNDAAQRLLGLDYPRDRGQPV 142

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT 557
              L      V + Y    L  D +Q L+     ++   ++L + I          + L 
Sbjct: 143 LNLLRW---PVFHDYF---LKGDFQQPLQ--LPSASNSRQILQVEIT---TFAGGDFLLF 191

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
             D++   Q +                + DF+  VSHE+RTPLT   G+ + +       
Sbjct: 192 FRDVTRVVQME--------------QMRRDFVGNVSHELRTPLTVFKGYLDTLSASEL-- 235

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
             + R+ + A  +D+    + +++ DLL +S+IE+   +     V +   + E    +  
Sbjct: 236 FDDARFQKAAGQMDQQVQRMENLLTDLLWLSRIETVSEDRETNAVDMVAMLEELREELGS 295

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEV 737
              E+ +++         ++L + R ++    N++ NA+ ++     + +S     N  +
Sbjct: 296 SYPERLVVLELETRE---KVLGNYRELRSAVSNLVINALKYSGDHDPVRVSWVREDNN-L 351

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
           +L V D+GVG+    L++  + F ++  S+  R  GTGLGL + K +  ++  +  I S 
Sbjct: 352 VLHVADSGVGIEERHLDRITERFYRVDESRNARTGGTGLGLAIVKHVAASHRAELTIESE 411

Query: 798 PAKGTLIEIIF 808
           P +G+   + F
Sbjct: 412 PGRGSCFSLHF 422


>gi|160885841|ref|ZP_02066844.1| hypothetical protein BACOVA_03845 [Bacteroides ovatus ATCC 8483]
 gi|156108654|gb|EDO10399.1| hypothetical protein BACOVA_03845 [Bacteroides ovatus ATCC 8483]
          Length = 534

 Score =  274 bits (700), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 81/381 (21%), Positives = 162/381 (42%), Gaps = 21/381 (5%)

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAI--INREGIILSTNRAVSKLFGYPVEDIL 493
           E       +R++      L SI+      I +   +    +L  N +++  +G       
Sbjct: 162 EIAVREYKEREVRASKT-LSSIMNNMGVDIYVNSFDSHD-MLYANESMAAPYGGIEHFEG 219

Query: 494 RKPFTVFLEQNTPSVMNHYLTEIL-SLDLRQTLEKITLGSTKEEKLLSL-RIIIKKLPFS 551
           +K +    +  T          ++    L   +         ++    +       +   
Sbjct: 220 KKCWQALYKDKTGECEFCPKKHLIDENGLPTKVYSWDYQRPFDKCWFRVFSAAFAWIDGQ 279

Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
             + +T  DI   K  + +L  AK+ AE     KS FLA +SHEIRTPL AI+GF+ ++ 
Sbjct: 280 MAHVITSVDIDHQKTIEEELRIAKEKAENLDRLKSAFLANMSHEIRTPLNAIVGFASLLV 339

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
                        +Y + +  +  L+L +++D+LD+SKIE+G ++   + + +     + 
Sbjct: 340 ESD----DKKERQDYVDIMQENTELLLQLISDILDLSKIEAGTLDFTMDYLDIKSFCEDI 395

Query: 672 ISLVQLYANEKRILIRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
           I    +   +K + +    A  +P   I  D + + Q+  N ++NA+ FT  G QI++  
Sbjct: 396 IRNYDIK-EDKPVPVL--LAPTLPNFYIYTDKKRLMQVITNFINNALKFTNKG-QILLEY 451

Query: 730 THTSNE-EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
               +  E+   V DTG+G+   ++++    F ++ +      +GTGLGL + +++++  
Sbjct: 452 HLKEDTCEIEFSVADTGMGIEPDKVDRVFDRFVKLNSF----SKGTGLGLSICRSIIEHL 507

Query: 789 MGKFYIFSTPAKGTLIEIIFP 809
            G   + S    G+      P
Sbjct: 508 GGTIGVESEMGTGSRFWFTHP 528


>gi|149280709|ref|ZP_01886819.1| Signal transduction histidine kinase [Pedobacter sp. BAL39]
 gi|149228533|gb|EDM33942.1| Signal transduction histidine kinase [Pedobacter sp. BAL39]
          Length = 536

 Score =  274 bits (700), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 77/250 (30%), Positives = 131/250 (52%), Gaps = 10/250 (4%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E +  + +L  AK+ AE+    K +FLA +SHEIRTP+  IIG + ++K     P     
Sbjct: 138 ELEAYQKELIKAKEQAEQGKRIKENFLANMSHEIRTPINGIIGLASLLKKTTLSP----D 193

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             E    ++ S + +L ++ND+LD+SKIESGK  ++     + +  ++  +L+++ A EK
Sbjct: 194 QEEMIRLLEISSDSLLGVINDILDLSKIESGKFKINRAETDVIKTCTDVTNLLRIRAMEK 253

Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS----NEEV 737
           ++ + T +   +P  I+AD   + QI +N++ NAI FT SG  + +          N +V
Sbjct: 254 KLDLITDYDPALPNLIMADSLRLNQILMNLIGNAIKFTASGS-VTLKVEALDKKGNNIQV 312

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
              V DTG+G+   +++K  + F Q      I+  GTGLGL + K + +   G   +FS 
Sbjct: 313 RFSVIDTGIGIAKDKIDKIFETFEQADEQTTIKFGGTGLGLSIVKNLAELKGGILEVFSE 372

Query: 798 PAKGTLIEII 807
              G+     
Sbjct: 373 EGHGSTFCFT 382


>gi|145606116|ref|XP_001406723.1| hypothetical protein MGG_11882 [Magnaporthe oryzae 70-15]
 gi|145013842|gb|EDJ98483.1| hypothetical protein MGG_11882 [Magnaporthe oryzae 70-15]
          Length = 1994

 Score =  274 bits (700), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 109/650 (16%), Positives = 198/650 (30%), Gaps = 108/650 (16%)

Query: 207  LHEIKKGHSSVEKEKYDIFSQQSPPPHLR--MKNKVSSLTEYYAHKDDVLK--TEKYPLL 262
            L  +       +    D+    S     R     ++++      H DD  +        L
Sbjct: 979  LDSLPAHVFVAQPPAGDMLWVNSRYLVYRGVTPAELAADPYGSLHPDDKEEYIKAWTYSL 1038

Query: 263  TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP----------SLS 312
             + E            +      +      ++      ++L                +  
Sbjct: 1039 RTGEP-FSRTVRIKRFDNAYRWFQARAIATRDKRNTVQQFLGSYMDIHDQHTAELKAARQ 1097

Query: 313  AYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
               +  E       +  P   F  +    + +AN  +L  T     D +    G    + 
Sbjct: 1098 EEIEASEAKHRLLANLIPQIIFTATEDEGITFANEQWLSYTGQSFEDSLG--LGFMDYVH 1155

Query: 372  APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP-- 429
               L+         L   + T +   +            L  +          P      
Sbjct: 1156 PDDLAKCRIPTDFSLSAVN-TPMPFESATVKTPLPGTPGLGRSTGTAAVNRPVPNPGSTK 1214

Query: 430  -QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA--IINREGIILSTNRAVSKLFG 486
             +  +   +  +  +  +       L         G+     +  G I  T         
Sbjct: 1215 LREMLSRHNSSSSSSSSEATSAGDLLRL----AKKGVIKAGTDSSGRISYT--------- 1261

Query: 487  YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK 546
                                                          +K  +     I   
Sbjct: 1262 ----------------------------------------TEVRLRSKTGEYRWHLIRCV 1281

Query: 547  KLPFSS------CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
            ++   +       Y  +  DI++ K  + KL       ++    K  FL+ +SHEIRTPL
Sbjct: 1282 EIGGVNWGSGVSSYFGSATDINDHKLLETKL-------KEAMESKGRFLSNMSHEIRTPL 1334

Query: 601  TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
              I G    ++             +Y N I  S N ++ I+ND+LD+SK+++G M L +E
Sbjct: 1335 IGISGMVSFLQETTL----TEEQRDYTNTIHTSANSLIMIINDILDLSKVDAGMMKLKYE 1390

Query: 661  PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFT 719
                   +     LV   A  K + +       +P  +  D   ++Q+ LN++ NAI FT
Sbjct: 1391 WFHTTSLIEAVNELVSTMAIAKGLELNYIVEPEVPAWVKGDKVRIRQVLLNVIGNAIKFT 1450

Query: 720  PSG---GQIIISTTHT-----SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
              G    +  ++T            +   + DTG G T  E E   KPF QI  S   + 
Sbjct: 1451 SEGEVFSRCSVATVKENEIGEDEIMLEFSIIDTGRGFTKDESELIFKPFSQIDGSSTRQH 1510

Query: 772  EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII----FPLYDTSHPH 817
             G+GLGL +++ +V+ + G+    +TP KG+          P  D+  P 
Sbjct: 1511 GGSGLGLVISRQLVELHGGQMNGTATPGKGSTFTFTAKFGLP-TDSDRPE 1559



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 41/356 (11%), Positives = 79/356 (22%), Gaps = 25/356 (7%)

Query: 163  LAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKY 222
             +A P  S      G  G       R   +     KR  K+ S         S++E +  
Sbjct: 825  FSAKPT-SSTGRGPGTPGAVNPKERRNSRESAVGEKRFLKRSSGTKGQWVQDSAIEDQD- 882

Query: 223  DIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQ 282
                        R    + S+      K       +     +              +   
Sbjct: 883  ----PSEESAVKRASEDLHSIALDKNEKATDSADGQRRGSRTGHKHTQLHSYGADFSHTF 938

Query: 283  YTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS--HGN 340
             +          + +      S      +    D  + L    +D  P   FV     G+
Sbjct: 939  QSLPPSSTVGMKSQQPPSRSGSGSVPREMLPPSDTLKGL---ILDSLPAHVFVAQPPAGD 995

Query: 341  LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARL 400
            + + N  +L+       +      G               IK            +   R 
Sbjct: 996  MLWVNSRYLVYRGVTPAELAADPYGSLH-----PDDKEEYIKAWTYSLRTGEPFS---RT 1047

Query: 401  HTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK------RKMEIEVMQL 454
              I+                 ++        G   +  D    +       ++E    + 
Sbjct: 1048 VRIKRFDNAYRWFQARAIATRDKRNTVQQFLGSYMDIHDQHTAELKAARQEEIEASEAKH 1107

Query: 455  CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN 510
              +       I     +  I   N       G   ED L   F  ++  +  +   
Sbjct: 1108 RLLANLIPQIIFTATEDEGITFANEQWLSYTGQSFEDSLGLGFMDYVHPDDLAKCR 1163



 Score = 50.8 bits (120), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 15/141 (10%), Positives = 40/141 (28%), Gaps = 10/141 (7%)

Query: 457  ILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
            IL++    + +     G +L  N       G    ++   P+      +    +  +   
Sbjct: 978  ILDSLPAHVFVAQPPAGDMLWVNSRYLVYRGVTPAELAADPYGSLHPDDKEEYIKAWTYS 1037

Query: 516  ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKL 571
            + +    +   +       +      +               +  +  DI +    +  L
Sbjct: 1038 LRTG---EPFSRTVRIKRFDNAYRWFQARAIATRDKRNTVQQFLGSYMDIHDQHTAE--L 1092

Query: 572  SHAKKIAEKESSHKSDFLARV 592
              A++   + S  K   LA +
Sbjct: 1093 KAARQEEIEASEAKHRLLANL 1113


>gi|116748271|ref|YP_844958.1| PAS/PAC sensor signal transduction histidine kinase
           [Syntrophobacter fumaroxidans MPOB]
 gi|116697335|gb|ABK16523.1| PAS/PAC sensor signal transduction histidine kinase
           [Syntrophobacter fumaroxidans MPOB]
          Length = 514

 Score =  274 bits (700), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 89/509 (17%), Positives = 167/509 (32%), Gaps = 50/509 (9%)

Query: 323 PETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
              ++      F          N   + +                 +       D   I 
Sbjct: 22  RALLEMLGAGVFPS-------FNAEVVAVADPDGDAAGIGLAKEKGIFTTADFRDLRKIP 74

Query: 383 PVMLYRS-DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTR 441
            + L            A L   + +     A+    FE   +  +    N ++ +  +  
Sbjct: 75  DLDLVVCLTGGEAPLEALLKRRRPSERLLHAVISRLFEDILRVRQQYLLNELQLDITEGI 134

Query: 442 INKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFL 501
           I             S+  +  D + ++  +  IL  N A  +  G   + ++ K     +
Sbjct: 135 IE------------SLFLSMRDHVLLLRPDFRILDVNEAFCRACGTDKDSLVGKVCHEVI 182

Query: 502 EQNTPSV----MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC---- 553
             +            L   L                   K     +    L         
Sbjct: 183 HGSGERCGGEGFVCPLKISLQTGTVAHAVHE--HVDGSGKQRVCEVTTVPLRKVHGKVEL 240

Query: 554 YSLTMHDISE--WKQEKNKLSHAKKIAEKESSH-----KSDFLARVSHEIRTPLTAIIGF 606
               + DI+E   K+ + K    K+   +             +A V HEI  PL+ I   
Sbjct: 241 VLEIVRDITEDLEKRVEEKTRALKRDLARLVHEDKMISLGKLVAGVVHEINNPLSGINAL 300

Query: 607 S----EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPV 662
           +    + +++         +++ Y + ID   +   DIV DLL  S++      +  +  
Sbjct: 301 ARLVHQELESCDLDEGRKEKFLYYLHLIDTESSRCSDIVKDLLSFSRLR----EVERKLF 356

Query: 663 SLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG 722
            L++ V +A+ L +     + +  +   A  +P ++ D   + Q  LN++ NA+   P G
Sbjct: 357 QLNDLVHKAVLLSRHRGGNQAVHFQLELAETLPEMIGDPGQLLQCLLNLIFNAVEAMPDG 416

Query: 723 GQIIISTTHT-SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           G + + T    +  E+ L V D G+G+      K  +PF    N    R +G GLGL + 
Sbjct: 417 GTVKVGTRFDSATNEIRLEVTDQGIGIPADLTSKVFEPFFSTKN----RDKGVGLGLSVV 472

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
             +V  + G  Y+ S   KGT   +  PL
Sbjct: 473 YGIVKEHGGTIYVRSELQKGTSFIVRLPL 501



 Score = 47.3 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 26/308 (8%), Positives = 73/308 (23%), Gaps = 25/308 (8%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-----IGDLLKRQNTWYG 145
               + +++E   +  G     ++G    +V                +   L+       
Sbjct: 151 PDFRILDVNEAFCRACGTDKDSLVGKVCHEVIHGSGERCGGEGFVCPLKISLQTGTV--A 208

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRV--DNDPRALGKRLDKK 203
                 ++G+      ++  +P+   + +        IV       +       + L + 
Sbjct: 209 HAVHEHVDGSGKQRVCEVTTVPLRKVHGKVELV--LEIVRDITEDLEKRVEEKTRALKRD 266

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEY--------------YAH 249
            + L    K  S  +     +    +P   +    ++                    Y H
Sbjct: 267 LARLVHEDKMISLGKLVAGVVHEINNPLSGINALARLVHQELESCDLDEGRKEKFLYYLH 326

Query: 250 KDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
             D   +    ++    S    +E    +        +     ++       +       
Sbjct: 327 LIDTESSRCSDIVKDLLSFSRLREVERKLFQLNDLVHKAVLLSRHRGGNQAVHFQLELAE 386

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
           +L     +   L    ++           G        F   T    ++  +   G+   
Sbjct: 387 TLPEMIGDPGQLLQCLLNLIFNAVEAMPDGGTVKVGTRFDSATNEIRLEVTDQGIGIPAD 446

Query: 370 LDAPKLSD 377
           L +     
Sbjct: 447 LTSKVFEP 454


>gi|17228224|ref|NP_484772.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17130074|dbj|BAB72686.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 1645

 Score =  274 bits (700), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 108/718 (15%), Positives = 220/718 (30%), Gaps = 115/718 (16%)

Query: 201  DKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE------YYAHKDDVL 254
            ++    L     G          I+        L    +     E       +      +
Sbjct: 686  ERLQLALEASDLGLWDWNITTGKIYRDWQWQKMLGYTQEDIEDDERVIEQLLHPEDLATV 745

Query: 255  KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN-NSKESFEYLSHRNHPSL-- 311
            K+     L         +             +     ++     +           +   
Sbjct: 746  KSAITAHLQGVTPVYEMEFRMRCAAGGWKWVQSRGQIVERNEQGQPLRMTGTTKDITERK 805

Query: 312  --SAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVD----DIEIAG 364
                  +  E          P+   +  +       N     +    + +     +E   
Sbjct: 806  ILEKELELREARLNAFFSGAPVGMSILDNQLRFVQINELIAHIHGKPAQEHIGKTLEEIA 865

Query: 365  GLSTLLDAPKLSDNNAIKP--------VMLYRSDRTCIAASARLHTIQWNRENSLAMTFI 416
                 L  P                  +       +          I         +  +
Sbjct: 866  PRIAPLVTPLCQKVLLTGQPILNVELSLPAVNQADSLRHFLVSYFPIPGEGNQLSGVGKV 925

Query: 417  PFEKANQFPENMPQNGIEPEDVDTRINKRKME-----------------IEVMQLCSILE 459
              E ++ + E   +   E    ++   +R +                      +L  +L 
Sbjct: 926  IVEISDVYDELRLRKRAEEALKESIERERAIAQVIQRMRQTLDLDTIFAATTEELRQVLN 985

Query: 460  ATSDGIAIINREGIILST-----------------------NRA-----VSKLFGYPVED 491
                 +   + +G                            N A     ++KL  Y  + 
Sbjct: 986  CDRAVVYRFDSQGSGEFVAESWGKGWISLIEKQKNVPHLTENTAKDQSCLAKLLEYTPQA 1045

Query: 492  ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
               K F    +       + Y+  +  L  +  +    L   +   LL+         + 
Sbjct: 1046 TPDKNFLCVADIYQAGFGSCYIEFLERLQAKAYIIVPILSGDQVWGLLATYQNSGPRQWK 1105

Query: 552  SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH--------------KSDFLARVSHEIR 597
            +     +  I    +   + +      +++S                KS+FLA +SHE+R
Sbjct: 1106 TGEINIVIQIGNQLEVALQQAQLLTQTQRQSQALEAAAIAADAANRAKSEFLANMSHELR 1165

Query: 598  TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
            TPL AI+GF++++ + +     N    +    I+R+G  +LD++ND+L++SKIE+G+  L
Sbjct: 1166 TPLNAILGFTQIMSHDKTLSKDN---QQNLTIINRAGEHLLDLINDVLEMSKIEAGRTTL 1222

Query: 658  HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAI 716
            +     L   +     ++Q  A  K + ++  +A NI + I AD   ++Q+ LNIL NAI
Sbjct: 1223 NINSFDLIHLLDNLQEMMQGRATAKGLHLKFEYAPNIAQHIQADESKLRQVLLNILGNAI 1282

Query: 717  HFTPSGGQIIISTTHTSNEE--------------------------VILRVRDTGVGMTN 750
             FT +G  II+     + +                           +I  ++DTG+G+ +
Sbjct: 1283 KFTETGS-IILRVKMGTGDWGLGTEEDTKTHLSIPNTQSPITNPQSLIFEIQDTGIGICD 1341

Query: 751  YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
             E+    + FGQ    ++ + +GTGLGL +++  V    G   + S    G+      
Sbjct: 1342 DEVCVLFEAFGQTEAGRKSQ-QGTGLGLAISRKYVQLMGGDISVSSAVGVGSTFSFQI 1398



 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 63/650 (9%), Positives = 170/650 (26%), Gaps = 108/650 (16%)

Query: 44  PCHDSFEQSNFTD---------------QNQESVSNTNYLDSENTFVFDPIPRTVRFTWN 88
           P H + E  NF                 Q  E+    +     + F   P P  +     
Sbjct: 352 PHHWTPEDQNFARSLTNLVSLALEARERQRAEAAHRISEQKLASAFRASPDPIAL----C 407

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
                   E+++   +  G    ++IG    +++  ++++  + +  +L++         
Sbjct: 408 TYPETRYIEVNDSFCRLFGYSRSQVIGNTDKELNIWVNLEECHFLSQILEKAKAIRNHEV 467

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGF-GIVHVNRVDNDPRALGKRLDKKFSHL 207
            +      +   +  +A  I     E  G +   G            A  + L      +
Sbjct: 468 DFRTSNGEIKTTL-FSAEMI-----EIDGQKYILGTAKDITERKQAEAESRLLLLTTQAI 521

Query: 208 HEIKKGHSSVEKE--------KYDIFSQQSP----------------------------- 230
                  S++            +D     +P                             
Sbjct: 522 ARAVDVKSALTLVLRVICQTIGWDFGEAWTPNRESHVLEHSLVCYCEEASLEEFCHQSQN 581

Query: 231 ---PPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS-----------EESSLPEQEDFH 276
               P   +  +V    +    +D  L  +   L +                +  +E   
Sbjct: 582 LRIAPGEGLPGRVWQTKQSEWIEDVSLVKQGQFLRSPQAAKVGLKAGFGIPIIAGKEVLA 641

Query: 277 TINLNQYTKKQYFGTLQNNSKESFEYLSHR-NHPSLSAYFDEGENLTPETVDKCPIPFFV 335
            +   + +       L          L        + +     E      ++   +  + 
Sbjct: 642 VLIFFKRSSIPVDKRLLMLLGAVATQLGSLIERKLIESAHRNSEERLQLALEASDLGLWD 701

Query: 336 YS--HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393
           ++   G + Y +  +  +  Y   D  +    +  LL      D   +K  +        
Sbjct: 702 WNITTGKI-YRDWQWQKMLGYTQEDIEDDERVIEQLLHP---EDLATVKSAITAHLQGVT 757

Query: 394 IAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
                               +     + N+  + +   G   +  + +I ++++E+   +
Sbjct: 758 PVYEMEFRMRCAAGGWKWVQSRGQIVERNEQGQPLRMTGTTKDITERKILEKELELREAR 817

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
           L +       G++I++ +   +  N  ++ + G P ++ + K     +      ++    
Sbjct: 818 LNAFFSGAPVGMSILDNQLRFVQINELIAHIHGKPAQEHIGKTLEE-IAPRIAPLVTPLC 876

Query: 514 TEILSLDLRQTLEKIT----LGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISE---- 563
            ++L       L        +      +   +         +        + +IS+    
Sbjct: 877 QKVLLTGQP-ILNVELSLPAVNQADSLRHFLVSYFPIPGEGNQLSGVGKVIVEISDVYDE 935

Query: 564 ---WKQEKNKLSHAKKIAEKESSHKSDF---------LARVSHEIRTPLT 601
               K+ +  L  + +     +                A  + E+R  L 
Sbjct: 936 LRLRKRAEEALKESIERERAIAQVIQRMRQTLDLDTIFAATTEELRQVLN 985



 Score = 48.5 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/180 (10%), Positives = 39/180 (21%), Gaps = 12/180 (6%)

Query: 275 FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF 334
              + L  +   +     ++ +      L  R      A     E          P P  
Sbjct: 346 LEAVKLPHHWTPEDQNFARSLTNLVSLALEARERQRAEAAHRISEQKLASAFRASPDPIA 405

Query: 335 V--YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL----------SDNNAIK 382
           +  Y        N SF  L  Y     I        +    +           +      
Sbjct: 406 LCTYPETRYIEVNDSFCRLFGYSRSQVIGNTDKELNIWVNLEECHFLSQILEKAKAIRNH 465

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
            V    S+            I+ + +  +  T     +  Q         +  + +   +
Sbjct: 466 EVDFRTSNGEIKTTLFSAEMIEIDGQKYILGTAKDITERKQAEAESRLLLLTTQAIARAV 525


>gi|295083823|emb|CBK65346.1| Signal transduction histidine kinase [Bacteroides xylanisolvens
           XB1A]
          Length = 547

 Score =  274 bits (700), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 82/382 (21%), Positives = 165/382 (43%), Gaps = 21/382 (5%)

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAI--INREGIILSTNRAVSKLFGYPVEDIL 493
           E       +R++      L SI+      I +   +    +L  N +++  +G       
Sbjct: 162 EIAVREYKEREVRASKT-LSSIMNNMGVDIYVNSFDSHD-MLYANESMAAPYGGIEHFEG 219

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK-EEKLLSL-RIIIKKLPFS 551
           +K +    +  T          ++  + + T           ++    +       +   
Sbjct: 220 KKCWQALYKDKTGECEFCPKKHLIDENGQPTKVYSWDYQRPFDKCWSRVFSAAFAWIDGQ 279

Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
             + +T  DI+  K  + +L  AK+ AE     KS FLA +SHEIRTPL AI+GF+ ++ 
Sbjct: 280 IAHVITSVDINHQKTIEEELRVAKEKAENLDRLKSAFLANMSHEIRTPLNAIVGFASLLI 339

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
                        +Y + +  +  L+L +++D+LD+SKIE+G ++   + + +     + 
Sbjct: 340 ESD----DKKERQDYVDIMQENTELLLQLISDILDLSKIEAGTLDFTMDHLDIKSFCEDI 395

Query: 672 ISLVQLYANEKRILIRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
           +    +   +K + +    A ++P   I  D + + Q+  N ++NA+ FT  G QI++  
Sbjct: 396 MRNYDIK-EDKPVPVL--LAPDLPEYYIYTDKKRLMQVITNFINNALKFTNEG-QIMLEY 451

Query: 730 THT-SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
            H   + E+   V DTG+G+   ++++    F ++ +      +GTGLGL + ++++   
Sbjct: 452 RHKAESNEIEFAVTDTGMGIAPDKVDQVFDRFVKLNSF----SKGTGLGLSICRSIIKHL 507

Query: 789 MGKFYIFSTPAKGTLIEIIFPL 810
            G     S    G+      PL
Sbjct: 508 GGTIGAESEIGVGSRFWFTHPL 529


>gi|218892432|ref|YP_002441299.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           LESB58]
 gi|218772658|emb|CAW28443.1| probable sensor/response regulator hybrid [Pseudomonas aeruginosa
           LESB58]
          Length = 651

 Score =  274 bits (700), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 73/260 (28%), Positives = 124/260 (47%), Gaps = 11/260 (4%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E +Q  ++L  A++ AE+ +  KSDFLA +SHE+RTP+  ++G  ++++           
Sbjct: 244 EQEQAISQLISAREEAEQANRAKSDFLAMMSHELRTPMNGVLGMLQLLETTEQTR----E 299

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             EY      S   +L ++ND+LD S+IE G + L   P +L E V  +  + Q  A ++
Sbjct: 300 QAEYTALATESTEHLLKVINDILDFSRIERGALELECIPFNLLELVQGSALVFQHSAQQR 359

Query: 683 RILIRTSFANNI--PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----E 736
            + +       +    +  D   ++QI +N+L NA+ FT  G  I +S    + +     
Sbjct: 360 GLALELQIQAGLENIEVCGDPTRIRQILVNLLGNALKFTEEGA-IHLSLEWQALDHDVLW 418

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           +   V D+G+G++   LE     F Q  +S   R  GTGLGL +A+ + +   G     S
Sbjct: 419 LTCAVHDSGIGISPERLEHMFDAFQQADSSISRRYGGTGLGLAIARTLAERMGGTLQAES 478

Query: 797 TPAKGTLIEIIFPLYDTSHP 816
               G+   +  PL     P
Sbjct: 479 KEGSGSTFTLEIPLPFQQSP 498


>gi|253699663|ref|YP_003020852.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21]
 gi|251774513|gb|ACT17094.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21]
          Length = 1040

 Score =  274 bits (700), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 113/798 (14%), Positives = 227/798 (28%), Gaps = 106/798 (13%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK 146
           W ID  G +   +E   +  G    +   M + ++             + +        +
Sbjct: 149 WVIDLEGKILSANEAACRMYGYNRDEFTLMSVYEIEAREDRREIKEHTEKVVATRYDRFE 208

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
           T     +G+ + V +  A +P    +  F  F     +             ++ + ++  
Sbjct: 209 TVHRRKDGSLIEVEVSTAFIP---ESGRFLTF-----LQDITSKKVAERALQQSELRYRA 260

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPP---PHLRMKNKVSSLTEYYAHKDDVL-KTEKYPLL 262
           + + +       +    +           H+  +  +      Y    D          +
Sbjct: 261 IVQTQAEFVVRYRRGGFLTFVNDTFCKYMHMSSEELLGRSLYPYFFLQDREHLIRTVESM 320

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
            +E      +      +     +K     + ++  +  E+ +     + S + +E    +
Sbjct: 321 DTEHLEQVLEIRAWLPDGRLVWQKWSNSVILDDVGQVVEFQATGMDITRSKHAEESLRKS 380

Query: 323 PE----TVDKCPIPF----FVYSHG-----NLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
            E      D     F     +              N SF  LT       +    G    
Sbjct: 381 EEKYRSLFDNMLNGFAYCRMILDSDLPMDFVFMEVNQSFEKLTG------LRGVKGKRMS 434

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
              P +  +         R   +                  L+        +   PE   
Sbjct: 435 EVLPGVGKSAPHLLAAFRRVALSAEPEQVEYF---------LSAINEWLAVSVYSPEAGC 485

Query: 430 QNGIEPEDVDTRINKRKM-----------EIEVMQLCSILEATSDG-IAIIN--REGI-- 473
              +       +  +  +           E    +L   L    D     I+   EG   
Sbjct: 486 FVAVFDVITKRKRTEECLAFLAQAVSEPGEQFFHRLAKFLAQALDMEFICIDQLEEGNQY 545

Query: 474 ----ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL--TEILSLDLRQTLEK 527
                +  + +      Y + D                 + H      +L     ++   
Sbjct: 546 ARTLAVYFDGSFEDNIRYTLRDTPCGEMVGNSVCCYRQGVRHLFPTDTLLQQIKAESYVG 605

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSSCYS--LTMHDISEWKQEKNKLSHAKKIAEKESSHK 585
             L        + L   I + P  +          +S     + +    ++   +     
Sbjct: 606 TVLW-GSNGVPIGLIAAIGRKPLGNRDLPQEIFQMVSPRAAAEMERGLHEEERLRLEHQL 664

Query: 586 SD---------FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
                          ++H+    LT I+G S  +   R  P       E    I+++   
Sbjct: 665 LHAQKLESLGILAGGIAHDFNNILTGILGNS-SLGLMRIDPDSPA--AENLQNIEKAAVR 721

Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696
             D+   +L  S    GK     EPV+L+  + E I L+++  ++K   ++ S A  +P 
Sbjct: 722 AADLAKQMLAYS----GKGMFVVEPVNLNLLLEEMIHLLEVSVSKK-AELKLSLAQELPP 776

Query: 697 ILADLRSVKQIALNILSNAIHF-TPSGGQIIISTTHT-----------------SNEEVI 738
           + AD   ++QI +N++ NA       GG I I T +                    E V 
Sbjct: 777 VQADPTQLRQIVMNLVINASEAIGEEGGSITIGTGYRHFDQSYLKEAWFDCELVEGEFVF 836

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           L+V DTG GM      +   PF         +  G GLG+     ++  + G   + S P
Sbjct: 837 LQVADTGCGMDESTRSRIFDPFFTT------KFTGRGLGMSAVLGIIRGHKGAIKVQSKP 890

Query: 799 AKGTLIEIIFPLYDTSHP 816
            +GT   ++ P  D   P
Sbjct: 891 GEGTTFTVLLPASDLPVP 908



 Score =  118 bits (297), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 49/535 (9%), Positives = 135/535 (25%), Gaps = 58/535 (10%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMR-----LCDVSDILHIDPNNH--IGDLLKRQNT 142
           DA+G   E +      +G      +           ++      P         L +   
Sbjct: 23  DAYGRPVEANASALSLLGLDREAFMAHTPQNPRWRLLAPDGGDLPPEQHPASVALSKGEA 82

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
             G T        +  + + + A+P+  +           +++        +    +   
Sbjct: 83  VTGFTAGIHTPHNDATIWVKIDAIPL--QQGHV-----CVVLNDITQQKLTKEQEHQAAL 135

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPP----PHLRMKNKVSSLTEYYAHKDDVLKTEK 258
           ++  L         V   +  I S          + R +  + S+ E  A +D     E 
Sbjct: 136 QYELLANTSMDGFWVIDLEGKILSANEAACRMYGYNRDEFTLMSVYEIEAREDRREIKEH 195

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
              + +       +      + +    +     +  + +         +         + 
Sbjct: 196 TEKVVATRYDR-FETVHRRKDGSLIEVEVSTAFIPESGRFLTFLQDITSKKVAERALQQS 254

Query: 319 ENLTPETVDKCPIPFFVY-SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
           E      V         Y   G L + N +F       S + +     L           
Sbjct: 255 ELRYRAIVQTQAEFVVRYRRGGFLTFVNDTFCKYMHMSSEELLGR--SLYPYFFLQDREH 312

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
                  M        +   A L          +   +      +   + +       + 
Sbjct: 313 LIRTVESMDTEHLEQVLEIRAWL-----PDGRLVWQKWSNSVILDDVGQVVEFQATGMDI 367

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGI----AIINREG----IILSTNRAVSKLFGYPV 489
             ++  +  +     +  S+ +   +G      I++ +     + +  N++  KL G   
Sbjct: 368 TRSKHAEESLRKSEEKYRSLFDNMLNGFAYCRMILDSDLPMDFVFMEVNQSFEKLTGLRG 427

Query: 490 EDILRKPFTVFLE--QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKK 547
             +  K  +  L     +   +      +      + +E          + L++ +    
Sbjct: 428 --VKGKRMSEVLPGVGKSAPHLLAAFRRVALSAEPEQVEYFLSAIN---EWLAVSV---Y 479

Query: 548 LPFSSCYSLTMHDISEWKQEKN-------------KLSHAKKIAEKESSHKSDFL 589
            P + C+      I++ K+ +              +    +       +   +F+
Sbjct: 480 SPEAGCFVAVFDVITKRKRTEECLAFLAQAVSEPGEQFFHRLAKFLAQALDMEFI 534



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/141 (14%), Positives = 47/141 (33%), Gaps = 8/141 (5%)

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK----PFTVFLEQN--TPSV 508
            ++ ++ S G+   +  G  +  N +   L G   E  +      P    L  +      
Sbjct: 9   QTMFDSMSQGMFCQDAYGRPVEANASALSLLGLDREAFMAHTPQNPRWRLLAPDGGDLPP 68

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQE- 567
             H  +  LS     T     + +   +  + ++I    L       + ++DI++ K   
Sbjct: 69  EQHPASVALSKGEAVTGFTAGIHTPHNDATIWVKIDAIPLQ-QGHVCVVLNDITQQKLTK 127

Query: 568 KNKLSHAKKIAEKESSHKSDF 588
           + +   A +     ++    F
Sbjct: 128 EQEHQAALQYELLANTSMDGF 148



 Score = 49.6 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 56/480 (11%), Positives = 124/480 (25%), Gaps = 56/480 (11%)

Query: 19  KGNTQDLSKKKIDNGFETEKSKKENPCHDSFEQSNFTD---------QNQESVSNTNYLD 69
           K +T+ +   + D  FET   +K+    +    + F           Q+  S        
Sbjct: 193 KEHTEKVVATRYDR-FETVHRRKDGSLIEVEVSTAFIPESGRFLTFLQDITSKKVAERAL 251

Query: 70  SENTFVFDPIPRT-VRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID 128
            ++   +  I +T   F       G+L  +++   K +   + +++G     +     + 
Sbjct: 252 QQSELRYRAIVQTQAEFVVRYRRGGFLTFVNDTFCKYMHMSSEELLGRS---LYPYFFLQ 308

Query: 129 PNNHIGDLLKRQNTWYGKTTL----WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIV 184
              H+   ++  +T + +  L    W  +G    V    +   I     +   F+  G+ 
Sbjct: 309 DREHLIRTVESMDTEHLEQVLEIRAWLPDGRL--VWQKWSNSVILDDVGQVVEFQATGM- 365

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHE-----------IKKGHSSVEKEKYDIFSQQSPPPH 233
                        ++ ++K+  L +           I      ++    ++         
Sbjct: 366 -DITRSKHAEESLRKSEEKYRSLFDNMLNGFAYCRMILDSDLPMDFVFMEVNQSFEKLTG 424

Query: 234 LRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQ 293
           LR       ++E                     S+ PEQ ++    +N++     +    
Sbjct: 425 LRGVKGK-RMSEVLPGVGKSAPHLLAAFRRVALSAEPEQVEYFLSAINEWLAVSVYSPEA 483

Query: 294 NNSKESFEYLSHRNHPS------LSAYFDEGENLTPETVDKCPIPF---FVYSHGNLFYA 344
                 F+ ++ R            A  + GE                 F+     L   
Sbjct: 484 GCFVAVFDVITKRKRTEECLAFLAQAVSEPGEQFFHRLAKFLAQALDMEFIC-IDQLEEG 542

Query: 345 NPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
           N     L  Y           +   L      +          +  R        L  I+
Sbjct: 543 NQYARTLAVYFDGSF---EDNIRYTLRDTPCGEMVGNSVCCYRQGVRHLFPTDTLLQQIK 599

Query: 405 WN--------RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKM-EIEVMQLC 455
                       N + +  I                I          + +    E  +L 
Sbjct: 600 AESYVGTVLWGSNGVPIGLIAAIGRKPLGNRDLPQEIFQMVSPRAAAEMERGLHEEERLR 659


>gi|75908367|ref|YP_322663.1| Cache sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
 gi|75702092|gb|ABA21768.1| Cache sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
          Length = 937

 Score =  274 bits (700), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 77/262 (29%), Positives = 139/262 (53%), Gaps = 21/262 (8%)

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
            +++ AK+ A+  +  KS+FLA +SHE+RTPL  I+G++++++        +   ++  N
Sbjct: 454 AEITAAKETADAANRAKSEFLANMSHELRTPLNGILGYAQILQ---MDSNTSDEQMQGLN 510

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I   G+ +L ++ND+LDI+KIE+ K+ L+ +   L + +  A  + ++ A++K ++ + 
Sbjct: 511 TIYECGSHLLTLINDILDIAKIEAKKLELYPKEFDLRKLLLGACEMCRIKADQKELIFKY 570

Query: 689 SFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQ---IIIST-----------THTS 733
              N IP  I AD + ++Q+ +NILSNAI FT  G     + +                 
Sbjct: 571 HLNNRIPANIFADEKRIRQVLINILSNAIKFTDHGTVTFDVEVVACTGTKLITNTNQLLP 630

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
             ++   + DTG+GMT+ +L+K   PF Q+      + EGTGLGL ++  +++       
Sbjct: 631 VHQLRFHIEDTGIGMTDEQLKKIFLPFEQV-GDNLHKSEGTGLGLAISSQILELMGSDLK 689

Query: 794 IFSTPAKGTLIEI--IFPLYDT 813
           + S   KGT        P+ DT
Sbjct: 690 VESVYGKGTKFWFDLDLPIVDT 711


>gi|89098743|ref|ZP_01171624.1| KinA [Bacillus sp. NRRL B-14911]
 gi|89086419|gb|EAR65539.1| KinA [Bacillus sp. NRRL B-14911]
          Length = 488

 Score =  274 bits (700), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 94/474 (19%), Positives = 197/474 (41%), Gaps = 41/474 (8%)

Query: 338 HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397
            G   Y +PS   L  Y   +  +       +L      D   +K      S  +    S
Sbjct: 54  EGIFLYVSPSCSTLLGYSQEELYK-----DCILAYCHPQDKEILKKEFRGLSPGSSSRIS 108

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
            R    + +    + +        +          I  +  +    + +      +   +
Sbjct: 109 FRFRRKEGD---YIWLETSISTLGDGQEAMC----ISRDMTERVNMEEENMETQEKYRFL 161

Query: 458 LEATSDGIAIINREGIILSTNRAVSKLFGY-PVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           +E + D I +   +GI    N    K+FG+   ++I+      ++  +       YL + 
Sbjct: 162 VEYSRDTIGMTTEKGIWTYMNDEGKKVFGFTSSKEIIGASLYDYVSPSDH----GYLKDF 217

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKK 576
              +   + E   + S    +  ++++I         + + + D++  K+ + KL +A+K
Sbjct: 218 YQANQTVSFELNIIRSDGNTRKAAIQLIPTVFKNRKLFQIIIKDVTGQKKTEEKLHNAEK 277

Query: 577 IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNL 636
           ++           A ++HEIR PLTAI GF++++  +        +  +YA+ I      
Sbjct: 278 LSVV-----GQLAAGIAHEIRNPLTAIKGFTQLLTER--------KTEKYADVILSELER 324

Query: 637 VLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696
           + +IVNDLL ++K     +    +  +L   V   ++L+   A    I+I   ++ +   
Sbjct: 325 IEEIVNDLLVLAKP----VVTEAQETNLVNIVKSVVTLLNTQALIYNIMIDVKYSLSEIS 380

Query: 697 ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKA 756
           +  ++  +KQ+ +N++ N+I   P GG+I I      N   ++ V+D G+G+    L K 
Sbjct: 381 VRCEIDKIKQVLINVIKNSIEAMPHGGKISIEVR-QDNSFAMISVKDEGIGIPEERLPKL 439

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            +PF         + +GTGLGL +   ++ ++ G  YI S   +GT+++++ P+
Sbjct: 440 GEPFY------STKEKGTGLGLMICNRIIKSHGGNIYITSKENEGTIVKLLIPV 487



 Score = 70.4 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 43/130 (33%), Gaps = 3/130 (2%)

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
           E   L   L+ ++D I+   +EGI L  + + S L GY  E++ +     +       ++
Sbjct: 33  EAKNLELALKHSADLISRHTKEGIFLYVSPSCSTLLGYSQEELYKDCILAYCHPQDKEIL 92

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN 569
                 +      +          KE   + L   I  L           D++E    + 
Sbjct: 93  KKEFRGLSPGSSSRIS---FRFRRKEGDYIWLETSISTLGDGQEAMCISRDMTERVNMEE 149

Query: 570 KLSHAKKIAE 579
           +    ++   
Sbjct: 150 ENMETQEKYR 159


>gi|323692410|ref|ZP_08106646.1| hypothetical protein HMPREF9475_01509 [Clostridium symbiosum
           WAL-14673]
 gi|323503550|gb|EGB19376.1| hypothetical protein HMPREF9475_01509 [Clostridium symbiosum
           WAL-14673]
          Length = 875

 Score =  273 bits (699), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 76/257 (29%), Positives = 117/257 (45%), Gaps = 13/257 (5%)

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
           + +  ++  +  S  K DFL+R+SHEIRTP+ AIIG + +  ++           E    
Sbjct: 482 ETNINRERYDLASRAKIDFLSRMSHEIRTPMNAIIGMTAIAMDR---AKQEEGVKECLIK 538

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           ID+S   +L ++ND+LD+SKIESGKM L     S+ +   E   L++    +K I     
Sbjct: 539 IDQSSQYLLSLINDILDMSKIESGKMKLACNNGSIMKMAEEIDDLMESQMRQKNITCIRD 598

Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST--------THTSNEEVIL-- 739
                P + ADL  +KQ+ +N+ SNA+ FT  GGQI  S               E     
Sbjct: 599 IQVENPWVYADLMRLKQVIINLFSNAVKFTNEGGQIRFSVYEQKMERRQPEDRNEAEFFF 658

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V D G+G++    E+    F Q  +       GTGLGL ++  +V    G+  + S   
Sbjct: 659 AVEDNGIGISPQNRERIFNAFEQAEDDTAAAYGGTGLGLSISSRLVRMMGGEIGLESREG 718

Query: 800 KGTLIEIIFPLYDTSHP 816
           +G+             P
Sbjct: 719 EGSRFSFTLRFIRAEEP 735


>gi|127513676|ref|YP_001094873.1| PAS/PAC sensor signal transduction histidine kinase [Shewanella
           loihica PV-4]
 gi|126638971|gb|ABO24614.1| PAS/PAC sensor signal transduction histidine kinase [Shewanella
           loihica PV-4]
          Length = 430

 Score =  273 bits (699), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 69/369 (18%), Positives = 135/369 (36%), Gaps = 31/369 (8%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           R    ++   + +     EA  D   +++ E  I   N+    + G        +     
Sbjct: 87  RKRVSQLAYLLARFRQGAEALPDAAVVLDSENNIAWCNKLAQLMLGLVWPQDNGQRIDNL 146

Query: 501 LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD 560
           +     S                      + +  + ++L +RI+      S    L   D
Sbjct: 147 IRHPDFSKYLKQAD--------FDEPFELIDTQSDSRILEIRIM---GYGSGQRLLIARD 195

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I+  +Q +                + +F+A VSHE++TPLT + G+ E+++        N
Sbjct: 196 ITRIRQLEG--------------MRKEFVANVSHELKTPLTVLQGYLEMMQGMAEPDSPN 241

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
            +     + + +  N +  +V  LL +S+IE G        V++   +       Q  A 
Sbjct: 242 AKA---MSQMQQQTNRMRSMVEQLLVLSRIEDGSAVNLETKVNMTVLMETLKEEAQALAL 298

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
             +  +       +  +      ++    N++SNAI +T  GG+I I             
Sbjct: 299 G-QYELSIEADPGL-NLYGSEVQLRSACSNLVSNAIRYTEPGGKISIRWKRVPMG-AEFS 355

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V DTG G+    L +  + F ++ +++  +  G+GLGL + K  +  +     I S    
Sbjct: 356 VTDTGEGIAPQHLTRLTERFYRVDSARSRQSGGSGLGLAITKHALHHHQSDLTIESKLGV 415

Query: 801 GTLIEIIFP 809
           G+    I P
Sbjct: 416 GSRFSFIIP 424


>gi|78042954|ref|YP_361359.1| sensor histidine kinase [Carboxydothermus hydrogenoformans Z-2901]
 gi|77995069|gb|ABB13968.1| sensor histidine kinase [Carboxydothermus hydrogenoformans Z-2901]
          Length = 445

 Score =  273 bits (699), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 57/244 (23%), Positives = 115/244 (47%), Gaps = 6/244 (2%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E  +     +   +  E+    +   +A ++HE+RTPL+ + G  E++  +         
Sbjct: 206 EIGELARAFNRMAEALERNEKLRRQMIADIAHELRTPLSILQGNFELLLEKVIEADE--- 262

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             E    +      +  +V +L ++S  E+G++ +    V +++  SE  +     A  K
Sbjct: 263 --ETLRSLAEEVKRLSRLVEELRELSLAEAGELKILPVEVEVNQFFSEVAAPFTSLAEAK 320

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
            I   T+      +   D   +KQ+  N+L+NA  +T  GG++ +        ++++ V 
Sbjct: 321 SISFETTLPAKGEKYSFDPDRMKQVVYNLLTNAFQYTGEGGKVKLEVKLLD-GKLLIEVT 379

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG G+   +L    + F +   S+     G+GLGL +AK++V+A+ GK ++ ST  +GT
Sbjct: 380 DTGPGIPPEDLPYIFERFYRGEKSRSRTTGGSGLGLAIAKSLVEAHGGKIWVESTVGQGT 439

Query: 803 LIEI 806
             ++
Sbjct: 440 TFKV 443


>gi|107101043|ref|ZP_01364961.1| hypothetical protein PaerPA_01002073 [Pseudomonas aeruginosa PACS2]
 gi|254234711|ref|ZP_04928034.1| hypothetical protein PACG_00580 [Pseudomonas aeruginosa C3719]
 gi|126166642|gb|EAZ52153.1| hypothetical protein PACG_00580 [Pseudomonas aeruginosa C3719]
          Length = 651

 Score =  273 bits (699), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 73/260 (28%), Positives = 124/260 (47%), Gaps = 11/260 (4%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E +Q  ++L  A++ AE+ +  KSDFLA +SHE+RTP+  ++G  ++++           
Sbjct: 244 EQEQAISQLISAREEAEQANRAKSDFLAMMSHELRTPMNGVLGMLQLLETTEQTR----E 299

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             EY      S   +L ++ND+LD S+IE G + L   P +L E V  +  + Q  A ++
Sbjct: 300 QAEYTALATESTEHLLKVINDILDFSRIERGALELECIPFNLLELVQGSALVFQHSAQQR 359

Query: 683 RILIRTSFANNI--PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----E 736
            + +       +    +  D   ++QI +N+L NA+ FT  G  I +S    + +     
Sbjct: 360 GLALELQIQAGLENIEVCGDPTRIRQILVNLLGNALKFTEEGA-IHLSLEWQALDHDVLW 418

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           +   V D+G+G++   LE     F Q  +S   R  GTGLGL +A+ + +   G     S
Sbjct: 419 LTCAVHDSGIGISPERLEHMFDAFQQADSSISRRYGGTGLGLAIARTLAERMGGTLQAES 478

Query: 797 TPAKGTLIEIIFPLYDTSHP 816
               G+   +  PL     P
Sbjct: 479 KEGSGSTFTLEIPLPFQQSP 498


>gi|217423576|ref|ZP_03455077.1| phosphate regulon sensor kinase PhoR [Burkholderia pseudomallei
           576]
 gi|217393434|gb|EEC33455.1| phosphate regulon sensor kinase PhoR [Burkholderia pseudomallei
           576]
          Length = 436

 Score =  273 bits (699), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 76/411 (18%), Positives = 151/411 (36%), Gaps = 35/411 (8%)

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT-----RINKRKMEIEVMQLCSILEATS 462
                   +      + P      G     +           R++E +  +    ++A+ 
Sbjct: 49  HTQRLWRLLDAPVYGEVPSAPGIWGEIYYRLHKLAKQWHAQVRQVEQQHSRFIQAIQASP 108

Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522
           +G+A+++    I   N      FG   +  LR+  T  +         +           
Sbjct: 109 NGVAMLDDRDQIEWCNAIAEVHFGLDAKRDLRQHVTHLVRHPDFVRYLN----------G 158

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES 582
           Q  ++  +         ++  +       +   L   DI+E ++                
Sbjct: 159 QHYDETLVMRGMGGNRQNVLAVQVFPYGENRKLLLTQDITELERT--------------D 204

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
           + + DF+A VSHE++TPLT + GF E ++     PL +     Y   +++  + +  IV 
Sbjct: 205 AMRRDFVANVSHELKTPLTVLSGFLETMRE---LPLSDDERARYLELMEQQASRMRHIVT 261

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702
           DLL ++K+E          V +   +       Q  +      I       +  +     
Sbjct: 262 DLLVLAKLEGESKPPADRAVDMRTVLDHLRDDAQTLSGRHH-EITFKVDETL-AVTGAQT 319

Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
            +     N+++NAI +TP GG I +        + +  V D+G+G+   EL +  + F +
Sbjct: 320 EIFSALGNLVTNAIRYTPEGGTIRVEWR-RDGAQAVFSVTDSGLGIPAAELPRLTERFYR 378

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
           +  S+     GTGLGL + K ++  +  +  I S   +G+     FP + T
Sbjct: 379 VDRSRSRDTGGTGLGLAIVKHVLQRHDAQLSIQSEEGRGSTFTARFPAHRT 429


>gi|212694788|ref|ZP_03302916.1| hypothetical protein BACDOR_04322 [Bacteroides dorei DSM 17855]
 gi|212662642|gb|EEB23216.1| hypothetical protein BACDOR_04322 [Bacteroides dorei DSM 17855]
          Length = 1045

 Score =  273 bits (699), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 92/417 (22%), Positives = 165/417 (39%), Gaps = 36/417 (8%)

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE---------ATSD 463
           +        N   E    +    +  +    ++ +     +L   LE            D
Sbjct: 500 VNTFYDVVLNCSTEPDMVDVFCMDSTELHNAQQMLSATNHKLSMALEVANIVPWKWNLKD 559

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVED---ILRKPFTVFLEQNTPSVMNHYLTEILSLD 520
              + +    I     A++ + G   ED   +  K +   + +     +     ++    
Sbjct: 560 HTILCDLNRPI-----AMAAMPGSISEDQLSVSDKQYFAKIIKEDRPRVIQAYRDLADGK 614

Query: 521 LRQTLEKITLGSTKEEKLLSLRI----IIKKLPFSSC----YSLTMHDISEWKQEKNKLS 572
           + +  E        + K   +         +    +        +   I+E K  +N+L 
Sbjct: 615 IEKVKE-EYRVLANDGKHWKIDWVEAQAAVETRDKNGKPLTLVGSSLIINERKTMENELL 673

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
            AK  AE+ +  KS FLA +SHEIRTPL AIIGFS ++              EY N I+ 
Sbjct: 674 SAKDRAEESNRLKSAFLANMSHEIRTPLNAIIGFSNILA----TAEEEQEKQEYINIIES 729

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
           +  L+L +++D+LD+SKIE+G ++  +  V L++ +SE  S+V+       I +      
Sbjct: 730 NNTLLLQLISDILDLSKIEAGTLDFSYSNVELNDILSEIESVVRYRTETCGIQLIAHKGL 789

Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752
               I  +   + Q+  N+L+NA  FT  G  I          E+   V+DTG G+   +
Sbjct: 790 PSCPIKTEKNRLMQVLNNLLNNASKFTSQGS-ITFGYKLC-GRELYFYVKDTGCGIPADK 847

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +      F ++ +      +GTGLGL + + +V+   G   + S   KG+      P
Sbjct: 848 VNSIFGRFVKLNSF----VQGTGLGLSICQTIVEHMGGHIGVESEEEKGSTFWFTIP 900


>gi|152982741|ref|YP_001352306.1| hybrid two-components system response regulator and sensor kinase
           [Janthinobacterium sp. Marseille]
 gi|151282818|gb|ABR91228.1| hybrid two-components system response regulator and sensor kinase
           [Janthinobacterium sp. Marseille]
          Length = 948

 Score =  273 bits (699), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 88/456 (19%), Positives = 174/456 (38%), Gaps = 41/456 (8%)

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQ---WNRENSLAMTFIPFEKANQFPENMPQNG 432
              +  + + L +S             I+   ++   ++ +                ++ 
Sbjct: 285 GKGSWPEYLALNKSVGEAGWRLVYYIPIRHLLYDDRIAIQLALALCALLVAGVFLGLRHI 344

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVED 491
            +   +        +   V    +++E     + ++ RE G +   N      F +  + 
Sbjct: 345 QKKLILPALRQYDALLDMVTFSQTVIETAPVALCVLRRENGSVALANELTRNWFEHEKDW 404

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
                                    +  +     ++       + + + L +   +    
Sbjct: 405 ----------------------QAAVLANPYGDKDRDI--QLHDGRHVHLTLAPTRYRGE 440

Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
                   DI+  KQ    L  AK  A+  ++ K+ FL  +SHE+RTPL  ++G  E+  
Sbjct: 441 EVLLCVFMDITAHKQIHESLLKAKLHADDANTAKTLFLTTMSHELRTPLHGLLGALELFS 500

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
                     +   Y + + +S +++L  V+  LDI++IE+G   L     S    + E 
Sbjct: 501 LTAV----TDQQRMYLHAMQQSSSILLKTVSQTLDIARIEAGAFELETTAFSSLALLEEV 556

Query: 672 ISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTT 730
           I+     A  K + I       IP +L  D+  +KQI  N++SNAI FT SG Q+++ + 
Sbjct: 557 IAAYAAPAERKALCICGVPDPAIPELLVGDVTRIKQILNNLMSNAIKFTDSG-QVVLRSR 615

Query: 731 HTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
             + E     ++L+V D+G G+    L +  +PF Q+  + Q++  GTGLGL + +    
Sbjct: 616 LLNLEHGMATIVLQVEDSGRGIDQVHLGRIFEPFYQVEQNAQLKS-GTGLGLSICRRFAQ 674

Query: 787 ANMGKFYIFSTPAKGTLI--EIIFPLYDTSHPHDCI 820
              G  +  S P  GT     +   +   + P + +
Sbjct: 675 MMGGTIWAMSEPGSGTSFSLTVSLQVKQDAAPSEVL 710


>gi|288957783|ref|YP_003448124.1| two-component sensor histidine kinase [Azospirillum sp. B510]
 gi|288910091|dbj|BAI71580.1| two-component sensor histidine kinase [Azospirillum sp. B510]
          Length = 593

 Score =  273 bits (699), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 97/300 (32%), Positives = 162/300 (54%), Gaps = 9/300 (3%)

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHD---ISEWKQEKNK 570
             + +  +          +      L +     +   +        +   I + ++ +++
Sbjct: 299 QRLTAQRMTVVGGAAGACAATLGLALLVSRAYGRRRSAEGEVRRAREAVLIEQRRRLQSE 358

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
               K++AE  +  KS+FLA +SHE+RTPL AIIGF++V+ +  FGP   P++ EY   I
Sbjct: 359 ----KELAEAANQAKSEFLANMSHELRTPLNAIIGFADVLMSGIFGPAP-PKHAEYLTAI 413

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
            +SG  +LD+VN+LLD++KIE+G++ L    ++LD+ +++ + LV+  A  K + +    
Sbjct: 414 HQSGRHLLDLVNELLDMAKIEAGRLELFPTRIALDDFLTDCLGLVEALALRKGVTLTGDA 473

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-VILRVRDTGVGMT 749
                 + AD   ++Q  LN+LSNAI FTP+GG + +  T   +    ++ VRD+G+GM 
Sbjct: 474 IAPGLLVTADGVRMRQAVLNLLSNAIKFTPAGGTVRLEATADPDGSGTVITVRDSGIGMN 533

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             E+  AM+PF Q+ N       GTGLGLPLA+  V+A+ G   + S P  GT + I  P
Sbjct: 534 AEEMLIAMEPFRQVHNYLTKAEAGTGLGLPLARRFVEAHGGTLTLDSRPGAGTTVTIRLP 593


>gi|192292771|ref|YP_001993376.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           TIE-1]
 gi|192286520|gb|ACF02901.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           TIE-1]
          Length = 880

 Score =  273 bits (699), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 115/682 (16%), Positives = 227/682 (33%), Gaps = 47/682 (6%)

Query: 154 GTNLYVPIDLAALPIYSRNREFSGFR-GFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212
           G     P  L  L + +    F  F    GI+       +   L    +  F  +     
Sbjct: 73  GRAGAQPYILGLLALLAMVGLFMLFAFAAGIIGFADRAAEDPILRAIPENAFDGIAVTDA 132

Query: 213 G-HSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271
           G H       Y   +  +    +R   +V       +     L          +E     
Sbjct: 133 GGHVVYANATYLALTGAATMQDVRPVERVFIGNPDVSEAVFRLLKAAREGRRLQEEVRVA 192

Query: 272 QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI 331
             D       +   +    + +   +  +                +      E +D  P 
Sbjct: 193 GADGTQGRWMRLRVRPLGTSKREARQTVWSIADITRDRERQEDVFQTLQHAIEYLDHAPC 252

Query: 332 PFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390
            FF V   GNL Y N +      +   +      G   L  +  +S + A     +    
Sbjct: 253 GFFSVNPAGNLVYVNATLANWLDHDLAEI-----GSGGLKLSDVVSGDGAALLTSIVPEP 307

Query: 391 RTCIAASARLHTIQWNRENS-LAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449
                    +   +   +   + +       A+  P       I     D    +R  EI
Sbjct: 308 GEVKTEVFDIDLKKRGGQTVPVRLYHKLAFGADGTPGPSRTLVISRARDDRLDPQRAAEI 367

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGY--PVEDILRKPFTVFLEQNTPS 507
             M+     + T   IA +++ G ++  N  ++KL     P   +  K           +
Sbjct: 368 RFMRF---FDQTPMAIATVDKTGTVVRANARLAKLAQSLDPAGAVASKSILAAASARDRA 424

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT-MHDISEWKQ 566
           V+   + +              + ++ +E+     +        +  ++  M + +E + 
Sbjct: 425 VLAGAIEQAAK-GQADIAPVEVMLASAKERWGQFFVTAVSDETDNEAAIVHMLETTERRA 483

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
            +N+++ A+K+              ++H+    L+AI+  ++ + N       +P + + 
Sbjct: 484 LENQVNQAQKMDT-----IGQLAGGIAHDFNNVLSAIMMANDFLLNAH--KPTDPSFQDI 536

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
              I ++      +V  LL  S+    K  L  + + L EA+++   L++    EK I +
Sbjct: 537 MQ-IKQNATRAATLVRQLLAFSR----KQTLRPQVLDLGEALTDIDRLLKRLIGEK-ISL 590

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT--------------HT 732
                 ++ R  AD+   +Q+ +N+  NA    P GG++ I T                 
Sbjct: 591 EMQHGRDLWRTKADVSQFEQVIVNLAVNARDAMPDGGKLTIRTANVTASEAAQLGHNGMP 650

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
           + + V + V DTG G+    ++K  +PF     S +  G+GTGLGL     ++    G  
Sbjct: 651 AADYVCVEVSDTGTGIPPEIVDKIFEPFF----STKEVGKGTGLGLSTVYGIIKQTGGFV 706

Query: 793 YIFSTPAKGTLIEIIFPLYDTS 814
           Y+ S   KGT   I  P +D +
Sbjct: 707 YVDSEIGKGTTFRIYLPRHDAA 728



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 51/376 (13%), Positives = 94/376 (25%), Gaps = 26/376 (6%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            DA G++   +       G  A  M  +R  +   I + D +  +  LLK          
Sbjct: 130 TDAGGHVVYANATYLALTG--AATMQDVRPVERVFIGNPDVSEAVFRLLKAAREGRRLQE 187

Query: 149 LWPIEG--TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
              + G        + L   P+ +  RE      + I  + R       + + L     +
Sbjct: 188 EVRVAGADGTQGRWMRLRVRPLGTSKREARQTV-WSIADITRDRERQEDVFQTLQHAIEY 246

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPP-----PHLRMKNKVSSLTEYYAHKDDVLKTE--KY 259
           L     G  SV      ++   +           + +    L++  +     L T     
Sbjct: 247 LDHAPCGFFSVNPAGNLVYVNATLANWLDHDLAEIGSGGLKLSDVVSGDGAALLTSIVPE 306

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
           P     E    + +      +      +           S   +  R            E
Sbjct: 307 PGEVKTEVFDIDLKKRGGQTVPVRLYHKLAFGADGTPGPSRTLVISRARDDRLDPQRAAE 366

Query: 320 NLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
                  D+ P+    V   G +  AN     L   +S+D        S L  A      
Sbjct: 367 IRFMRFFDQTPMAIATVDKTGTVVRANARLAKL--AQSLDPAGAVASKSILAAASARDRA 424

Query: 379 NAIKPVMLYRSDRTCI-AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
                +      +  I      L + +                      +M         
Sbjct: 425 VLAGAIEQAAKGQADIAPVEVMLASAKERWGQFFVTAVSDETDNEAAIVHML-------- 476

Query: 438 VDTRINKRKMEIEVMQ 453
                 +R +E +V Q
Sbjct: 477 --ETTERRALENQVNQ 490



 Score = 41.2 bits (95), Expect = 0.76,   Method: Composition-based stats.
 Identities = 45/414 (10%), Positives = 105/414 (25%), Gaps = 45/414 (10%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKM--IGMRLCDVSDILHIDPNNHIGDLLKRQNTWY 144
           ++++  G L  ++  L   + +   ++   G++L DV              LL       
Sbjct: 255 FSVNPAGNLVYVNATLANWLDHDLAEIGSGGLKLSDVVSGDG-------AALLTSIVPEP 307

Query: 145 GK------TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP-RALG 197
           G+             G    VP+ L     +  +      R   I        DP RA  
Sbjct: 308 GEVKTEVFDIDLKKRG-GQTVPVRLYHKLAFGADGTPGPSRTLVISRARDDRLDPQRAAE 366

Query: 198 KRLDKKFS------HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKD 251
            R  + F          +              +     P   +  K+ +++ +     +D
Sbjct: 367 IRFMRFFDQTPMAIATVDKTGTVVRANARLAKLAQSLDPAGAVASKSILAAASA----RD 422

Query: 252 DVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
             +           ++ +   E            + +   + + +      +        
Sbjct: 423 RAVLAGAIEQAAKGQADIAPVEVMLASAKE-RWGQFFVTAVSDETDNEAAIVHMLETTER 481

Query: 312 SAYFDEGENLTP-ETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
            A  ++       +T+ +                N     +        +          
Sbjct: 482 RALENQVNQAQKMDTIGQLAGGIAHD-------FNNVLSAIMMANDF-LLNAHKPTDPSF 533

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
                   NA +   L R      +    L     +   +L        K     +   +
Sbjct: 534 QDIMQIKQNATRAATLVRQL-LAFSRKQTLRPQVLDLGEALT-DIDRLLKRLIGEKISLE 591

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLC-SILEATSDGIAIINREGIILSTNRAVSK 483
                +   T+ +  + E  ++ L  +  +A  DG      +  I + N   S+
Sbjct: 592 MQHGRDLWRTKADVSQFEQVIVNLAVNARDAMPDG-----GKLTIRTANVTASE 640


>gi|163800895|ref|ZP_02194795.1| sensor histidine kinase/response regulator [Vibrio sp. AND4]
 gi|159175244|gb|EDP60041.1| sensor histidine kinase/response regulator [Vibrio sp. AND4]
          Length = 576

 Score =  273 bits (699), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 82/303 (27%), Positives = 149/303 (49%), Gaps = 14/303 (4%)

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN------ 569
           +L+    +  + I +    ++   S+        F       + DI   ++ +       
Sbjct: 139 LLTGIKSEVTQTIIILVGAQKGQFSIENRETLRRFRPLIERAVIDIETKEKLQRIVEVRT 198

Query: 570 -KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
            +L+ A++ AE+ +  KS+FLA +SHEIRTPL +++G  ++++  R       +  E  N
Sbjct: 199 SQLAKAREEAERANQSKSEFLAMMSHEIRTPLNSVLGMLDILRQSRL----TEQQFEVLN 254

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            ++ S  L+L I++D+LD+SKIESG  +L+ +  +L +AV+  I   +  A  K +    
Sbjct: 255 QMECSAELLLAIISDILDLSKIESGSFHLNEKWTNLSDAVTLVIYQQKQLATNKNLSFEY 314

Query: 689 SFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747
               ++  +   D   V Q+  N++ NA  FT  GG I ++    S+ ++++ V DTG+G
Sbjct: 315 QCNLDSNKQYWIDSTRVSQVLFNLIGNASKFTDFGG-INVTV-IESDGQLVISVIDTGIG 372

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           +   ++      F Q  +S   R  GTGLGL + K +V+   G   + S    G+  EI 
Sbjct: 373 IPKAKIGNLFTAFHQGDSSITRRFGGTGLGLAITKHLVEMMRGTISVKSEENVGSHFEIK 432

Query: 808 FPL 810
            P+
Sbjct: 433 IPV 435


>gi|163746272|ref|ZP_02153630.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal [Oceanibulbus
           indolifex HEL-45]
 gi|161380157|gb|EDQ04568.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal [Oceanibulbus
           indolifex HEL-45]
          Length = 683

 Score =  273 bits (699), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 77/419 (18%), Positives = 146/419 (34%), Gaps = 52/419 (12%)

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
                M            +     +  E       + +  +G    + +  +++ N    
Sbjct: 273 ATIALMAGLWAFRRVTLKKQEAHALLAEG------IGSIQEGFIAFDEKERLVTVNSKFL 326

Query: 483 KLF-GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL--- 538
           +         +  K     L        +    + +    +   +++             
Sbjct: 327 EYHPEIADLLVPGKTIEELLRHWVARHQHP---KDVEEREKWIAKRLARFRNPTGTFNLE 383

Query: 539 ----LSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
                 L++   + P          D++  K+  +        A+     K++FL  VSH
Sbjct: 384 VSDNFWLKVTESRTPH-GYTVGIWTDVTTEKRALD-------AAKAADREKTEFLNNVSH 435

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGN--------------------PRYIEYANY----I 630
           E+RTPLT I G +  +++    P                         + ++ +     I
Sbjct: 436 ELRTPLTVISGRASFLQHSEKLPQARRMQTALTNSPNATPDIRSSVNEFQDFVSDQAGGI 495

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
             S   +L +V DLLD +K+  GKM L  + +   E        ++  A  K + +    
Sbjct: 496 AGSSKHMLRLVEDLLDWTKVARGKMELDLQEIEASEIARSVADDLRPDAEAKGLTLTYE- 554

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
            N      A+   ++QI  N++SNAI FT SG  I +   H + EE+   V DTG G++ 
Sbjct: 555 DNGTATANAEPVRLRQILYNLISNAIKFTRSG-NIHLKM-HQAAEEITFCVTDTGCGISE 612

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             +++    F Q+  S      G GLGL +A+ +   + G   + S    G+   +  P
Sbjct: 613 ENIKRVFLRFQQVDGSMSRENGGLGLGLAIAEQLATLHGGGLSLESEVDVGSTFRLTLP 671


>gi|325285799|ref|YP_004261589.1| integral membrane sensor signal transduction histidine kinase
           [Cellulophaga lytica DSM 7489]
 gi|324321253|gb|ADY28718.1| integral membrane sensor signal transduction histidine kinase
           [Cellulophaga lytica DSM 7489]
          Length = 351

 Score =  273 bits (699), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 61/246 (24%), Positives = 119/246 (48%), Gaps = 11/246 (4%)

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           K+ +      ++        + DFL  VSHE++TPL  + G+   + +   G + + +  
Sbjct: 107 KKIEIDTLKIREEY------RKDFLGNVSHELKTPLFTVQGYILTLLD---GAMDDKKVR 157

Query: 625 E-YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
           E Y    ++    ++ IV DL  I+K+E+G + + FE   + E +     L+++ A +K+
Sbjct: 158 EKYLERANKGVERLIYIVKDLDMITKLEAGGLTMEFEDFDIVELIQNVFDLLEMRAAKKQ 217

Query: 684 ILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           I +        P  + AD   ++Q+  N+L N+I +  + G   +S  +    +VI+RV 
Sbjct: 218 ITLTFDMEYKEPILVRADKERMQQVVSNLLVNSIKYGHTNGTTEVSVENLIKNKVIVRVT 277

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D G G++   L +  + F ++  S+     G+GLGL + K +++A+  K Y+ S    G+
Sbjct: 278 DNGEGISKEHLSRLFERFYRVEKSRNREVGGSGLGLSIVKHIIEAHNEKIYVESVVDVGS 337

Query: 803 LIEIIF 808
                 
Sbjct: 338 EFSFTL 343


>gi|320008190|gb|ADW03040.1| GAF sensor hybrid histidine kinase [Streptomyces flavogriseus ATCC
            33331]
          Length = 1810

 Score =  273 bits (699), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 76/329 (23%), Positives = 152/329 (46%), Gaps = 27/329 (8%)

Query: 514  TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT-MHDI----SEWKQEK 568
             ++L      T +        E +  +L+    +L   +        DI    +E ++ +
Sbjct: 1264 EKLLEQSQELTEQLRDRSQELENRQKALQASNAELEEKAELLAQQNRDIEVKNTEIEEAR 1323

Query: 569  NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
              L    +       +KS+FLA +SHE+RTPL +++  ++++ +   G L  P+ +E+A 
Sbjct: 1324 QVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNAEGNLS-PKQVEFAE 1382

Query: 629  YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
             I  +G+ +L ++ND+LD+SK+E+GKM++    ++L + V    +  +    EK +    
Sbjct: 1383 TIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVDYVEATFRPLTAEKGLDFSV 1442

Query: 689  SFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIII-------------------- 727
              +  +P  +  D + + Q+  N+LSNA+ FT SG   ++                    
Sbjct: 1443 RVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDSGAVELVIRPAGADVPNAIREHLLEAG 1502

Query: 728  STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
            S      + +   V DTG+G+ + ++    + F Q   +   +  GTGLGL +++ +   
Sbjct: 1503 SLRDADGDLIAFSVTDTGIGIASSKMLVIFEAFKQADGTTSRKYGGTGLGLSISREIARL 1562

Query: 788  NMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
              G+ +  S P +G+   +  PL+ +  P
Sbjct: 1563 LGGEIHAASEPGRGSTFTLYLPLHPSELP 1591


>gi|239993534|ref|ZP_04714058.1| Response regulator receiver:ATP-binding region, ATPase-like protein
           [Alteromonas macleodii ATCC 27126]
          Length = 890

 Score =  273 bits (699), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 83/255 (32%), Positives = 131/255 (51%), Gaps = 11/255 (4%)

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           S+ +     ++ AK  AE+ ++ KS FLA +SHEIRTP+  IIG  E+ + Q        
Sbjct: 370 SQLESLNKAITEAKIKAEQATASKSMFLANMSHEIRTPMNGIIGLIELAQQQELSTT--- 426

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
               Y +    SG ++L ++ND+LD SKIE+GK+ +     SL       I+++ L A E
Sbjct: 427 -VKGYLDKAAYSGQILLSVINDILDFSKIEAGKLKIEEVSFSLHSLFDNLIAVIALRAKE 485

Query: 682 KRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTT--HTSNEEV- 737
           K + +  +    IP  ++ D   + QI +NI +NA+ FT  G +I I           V 
Sbjct: 486 KNLSVHFTVNPKIPPQVIGDPLRIAQIIMNIGNNAVKFTEQG-RIDIEFDGNLNEKGNVL 544

Query: 738 --ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
              +R+ D+G+GM+  +L++  KPF Q   S   +  GTGLGL +   + +   G+    
Sbjct: 545 NLTMRITDSGIGMSAAQLDRIFKPFTQADGSTNRKYGGTGLGLAIVSQLTELMNGRLDAT 604

Query: 796 STPAKGTLIEIIFPL 810
           ST  KG+  E+  PL
Sbjct: 605 STMGKGSTFEVELPL 619


>gi|237726273|ref|ZP_04556754.1| two-component system response regulator sensor kinase [Bacteroides
           sp. D4]
 gi|229434799|gb|EEO44876.1| two-component system response regulator sensor kinase [Bacteroides
           dorei 5_1_36/D4]
          Length = 748

 Score =  273 bits (699), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 95/435 (21%), Positives = 168/435 (38%), Gaps = 20/435 (4%)

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV-- 438
            + +  Y+     I     +    W  + +  +  +           +            
Sbjct: 326 WQAMKRYQIPPESIPPEYTIMYRPWREKYATPILILASLLVFTLLVGIAYLIYIYTLEKG 385

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
             +   R +  E   L   LE         +  G     ++A  +L       +  K   
Sbjct: 386 RKKEALRNLRFEHEALTLALEGGKTYAWCFD--GKTAVFDQAFCELTNRSQNLLEIKEIA 443

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS-LT 557
            ++     +     ++ IL    R+T +          +    R  + +    +      
Sbjct: 444 NYVHPGDQAQFRKNVSNIL-HRPRRTAQYRCKFDDTGYQWWEFRYSVLQHYEQNPIITGL 502

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
           + +I E K ++ +L  A+K+AE+    K  FLA +SHEIRTPL AI+GFS ++  ++   
Sbjct: 503 LVNIQEIKDKEEELIRARKLAEQA-ELKQSFLANMSHEIRTPLNAIVGFSNLLTTEK--N 559

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
           +      E+A+ ID +  L+L +VND+L++S+IESG M+ H E  S            Q+
Sbjct: 560 ISEEEKKEFASIIDNNTRLLLKLVNDVLELSRIESGNMSFHCEDCSAHHFAETVYQTHQV 619

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH---TSN 734
                 +     F +    I  D   + Q+  N L NA  FT  G    I   +      
Sbjct: 620 IILPP-VEFIKEFPDEDVTIHIDRMRLTQVITNFLGNAKKFTSQG---HIKLGYFCDKEK 675

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
           +E+   V DTG G+   EL+   + F +    +    +G GLGL ++K +V+   G   +
Sbjct: 676 KEIHFFVEDTGAGIPKEELQMIFERFYK----RNEFVQGVGLGLAISKVIVEKMNGHIDV 731

Query: 795 FSTPAKGTLIEIIFP 809
            S   KG+    + P
Sbjct: 732 QSEVNKGSRFTAVLP 746


>gi|212691439|ref|ZP_03299567.1| hypothetical protein BACDOR_00931 [Bacteroides dorei DSM 17855]
 gi|212666049|gb|EEB26621.1| hypothetical protein BACDOR_00931 [Bacteroides dorei DSM 17855]
          Length = 757

 Score =  273 bits (699), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 95/435 (21%), Positives = 168/435 (38%), Gaps = 20/435 (4%)

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV-- 438
            + +  Y+     I     +    W  + +  +  +           +            
Sbjct: 335 WQAMKRYQIPPESIPPEYTIMYRPWREKYATPILILASLLVFTLLVGIAYLIYIYTLEKG 394

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
             +   R +  E   L   LE         +  G     ++A  +L       +  K   
Sbjct: 395 RKKEALRNLRFEHEALTLALEGGKTYAWCFD--GKTAVFDQAFCELTNRSQNLLEIKEIA 452

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS-LT 557
            ++     +     ++ IL    R+T +          +    R  + +    +      
Sbjct: 453 NYVHPGDQAQFRKNVSNIL-HRPRRTAQYRCKFDDTGYQWWEFRYSVLQHYEQNPIITGL 511

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
           + +I E K ++ +L  A+K+AE+    K  FLA +SHEIRTPL AI+GFS ++  ++   
Sbjct: 512 LVNIQEIKDKEEELIRARKLAEQA-ELKQSFLANMSHEIRTPLNAIVGFSNLLTTEK--N 568

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
           +      E+A+ ID +  L+L +VND+L++S+IESG M+ H E  S            Q+
Sbjct: 569 ISEEEKKEFASIIDNNTRLLLKLVNDVLELSRIESGNMSFHCEDCSAHHFAETVYQTHQV 628

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH---TSN 734
                 +     F +    I  D   + Q+  N L NA  FT  G    I   +      
Sbjct: 629 IILPP-VEFIKEFPDEDVTIHIDRMRLTQVITNFLGNAKKFTSQG---HIKLGYFCDKEK 684

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
           +E+   V DTG G+   EL+   + F +    +    +G GLGL ++K +V+   G   +
Sbjct: 685 KEIHFFVEDTGAGIPKEELQMIFERFYK----RNEFVQGVGLGLAISKVIVEKMNGHIDV 740

Query: 795 FSTPAKGTLIEIIFP 809
            S   KG+    + P
Sbjct: 741 QSEVNKGSRFTAVLP 755


>gi|262382235|ref|ZP_06075373.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
 gi|262297412|gb|EEY85342.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
          Length = 846

 Score =  273 bits (699), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 99/559 (17%), Positives = 202/559 (36%), Gaps = 54/559 (9%)

Query: 275 FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF 334
           +  +++          ++     E    + H      +    + E       DK P    
Sbjct: 177 WSALDIENLHMLADILSIAIERGEVQGLVEHT-----AMQVMKSETKFKIIFDKMPWGAE 231

Query: 335 VYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTC 393
           +Y   G L   N + L +        + +      + + P +          L       
Sbjct: 232 LYDENGVLVDINQADLDIFGVTREQAVGLN-----MFENPNIPKYVNQS---LKNGKDIF 283

Query: 394 IAASARLHTIQWNR-------ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
              +        N          +  +        +          I  +D +  I + +
Sbjct: 284 FPLNYDFKVASQNGYYDSHHDSKTKHLLVKGVTLKDSLDNIFGYIYIVFDDTENHIKREQ 343

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILST----------NRAVSKLFGYPVEDILRKP 496
           +E  + +L   ++     +   + E   L+           N  +  +  Y  +   ++ 
Sbjct: 344 IENSLARLKVSVDTGDSILWEYDVENDKLTVDFGLNEDINNNEGLKAIHDYNFK--NQED 401

Query: 497 FTVFLEQNTPSVMN-HYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--- 552
           +   +  +    +       +L   +   +         +    +  +   K        
Sbjct: 402 YKSSIHPDDFDRVYNKQFKPLLQGKINNFVAAYRRILNGKTFWFNSNVRSYKFNDDGTPN 461

Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
                  +I++ ++++ +L   K    +    KS FLA +SHEIRTPL AI+GFS +I  
Sbjct: 462 RIVSYTSNITQQREKEIELIKVK----EADKLKSAFLANMSHEIRTPLNAIVGFSNIIAE 517

Query: 613 QRFGPLGNP-RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
                + +      Y + I ++ +L+L +++D+LD SKIE+G M+ HFE V + +   E 
Sbjct: 518 -----IDDEVERQSYLDIIHKNNDLLLQLIDDILDFSKIEAGTMDYHFEEVDIKDICGE- 571

Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
           I+L         + +     +    +  D R V Q+  N ++NAI FT  G  I I    
Sbjct: 572 IALADSIKMPSDVDLIFDLDSPSVIVKTDERRVMQVISNFVNNAIKFTTKGS-ITIYYEI 630

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
              + + + V+DTG+G++     +  + F ++        +GTGLGL +++ +++A  GK
Sbjct: 631 E-GDFIRVCVKDTGIGISAENQRRIFERFIKVDTF----QQGTGLGLTISRTIIEALGGK 685

Query: 792 FYIFSTPAKGTLIEIIFPL 810
             + S    G+      PL
Sbjct: 686 IGVDSEEGGGSTFWFTLPL 704


>gi|332139904|ref|YP_004425642.1| sensor protein BarA [Alteromonas macleodii str. 'Deep ecotype']
 gi|327549926|gb|AEA96644.1| sensor protein BarA [Alteromonas macleodii str. 'Deep ecotype']
          Length = 1042

 Score =  273 bits (699), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 77/251 (30%), Positives = 134/251 (53%), Gaps = 9/251 (3%)

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
            +L  A+K A K S+ KS FLA +SHEIRTPL AI+GFS+ + N            E   
Sbjct: 415 ARLDIARKDAIKASNVKSQFLANMSHEIRTPLNAILGFSKELNNASLPT----DQQEQVR 470

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            ++ + + +L IVND+LD SKIE+GK+ ++ +P S ++ + E ++++   ++ K +    
Sbjct: 471 IVNTAADNLLTIVNDVLDFSKIEAGKLTINNQPFSPNKLLEEMVTIMAKSSHSKHLEFVF 530

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN----EEVILRVRDT 744
                  +++ D+  +KQ+  N+LSNA+ FT SG  I  S    +      EV + + DT
Sbjct: 531 DLHPLPEKLIGDVFRIKQVLNNLLSNALKFTSSG-TITFSVRGRALPHGIHEVNMTIEDT 589

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G++  + +K    F Q+ ++     +GTGLGL +++ +V    G   + S   +G+  
Sbjct: 590 GIGISRQDRKKLFNAFSQVDDALNRNYQGTGLGLVISRELVRLMNGDLTLKSALGQGSTF 649

Query: 805 EIIFPLYDTSH 815
            +   +   S 
Sbjct: 650 IVSLRMTQLSQ 660


>gi|315169595|gb|EFU13612.1| PAS domain S-box [Enterococcus faecalis TX1342]
          Length = 591

 Score =  273 bits (699), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 71/363 (19%), Positives = 155/363 (42%), Gaps = 30/363 (8%)

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
            Q   +L+    G+ II+ +G +   N  + ++ G        K       +        
Sbjct: 250 EQFHELLDELMIGVFIIDTQGRLRLLNPKMQEMLGLSA-----KNMQSNYLEVIQDADLI 304

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY--SLTMHDISEWKQEKN 569
           +L   +  +     ++IT+        L L +       ++ Y      +D++  +Q + 
Sbjct: 305 HLIHQVVAEKNSLHQEITVTQGPTPLRLDLSLRYLDDQSANDYQVLGIAYDLTRVRQLE- 363

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
                          + DF++ VSHE++TP+T+++GF+E + +            ++ + 
Sbjct: 364 -------------KMQKDFVSNVSHELKTPVTSLLGFTETLIDG--AKEDPEVLNQFLHI 408

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           + +    +  ++ ++L++S+  S  +    + ++L++ ++E +   Q     K++    +
Sbjct: 409 MQKDAQRLQQLIQEILELSR-GSATIPYAEQEITLEKFITEILGPYQQQLAAKQLK---T 464

Query: 690 FANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVG 747
             + +P             I  N++ NAI ++   GQI IS     N+++ L V+DTG+G
Sbjct: 465 VVHGLPESQFFTKYELFYPIVKNLIENAIQYSQENGQITISYAIE-NQQLRLSVQDTGIG 523

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           ++  + E+  + F ++  ++     GTGLGL + +   +   GK  I S    GT   I 
Sbjct: 524 ISQKDQERIFERFYRVDKARSRHSGGTGLGLAIVQNYTELLGGKIAIDSHLGLGTTFTIT 583

Query: 808 FPL 810
            PL
Sbjct: 584 LPL 586


>gi|262381814|ref|ZP_06074952.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|301310286|ref|ZP_07216225.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
 gi|262296991|gb|EEY84921.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|300831860|gb|EFK62491.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
          Length = 364

 Score =  273 bits (699), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 95/346 (27%), Positives = 158/346 (45%), Gaps = 27/346 (7%)

Query: 481 VSKLFGYPVEDILRKPFTVFL------EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
             + +   + ++   P +  +      +      +   L+ ++        +        
Sbjct: 36  AMEQWYLNMGEVPGTPLSQIVGIYSNVKPEDRECLKTSLSRLV-HGETDHDQGEVRVRDG 94

Query: 535 EE-KLLSLRIIIKKLPFSSCYSLTMH-DISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
           E  K + L I+   L  SS   L M+ DISE K  + ++      AEK    KS FLA +
Sbjct: 95  EGWKWVRLDIMEAGLEKSSPILLLMNYDISELKAMEERML----KAEKSERLKSSFLANI 150

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHEIR PL AI+GFS ++ ++  G L      EY N I  +  L+L IVND+LD++K+ES
Sbjct: 151 SHEIRMPLNAIVGFSSLLGDEEDGEL----RQEYINLIQTNNELLLGIVNDVLDLAKLES 206

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712
           G M   F    L + + E ++  Q+      + +    + +   + +D   +KQ+  N +
Sbjct: 207 GTMTFDFMEFDLRQLIVETVASFQIKVPR-GVALTYPESLDSFLLRSDRIRLKQVLGNFI 265

Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           +NAI +T  G  II+S     N EV+L V DTG GM+          F +  N    + +
Sbjct: 266 TNAIKYTSIGS-IILSYQAMEN-EVLLSVTDTGEGMSEEIKLHVFDRFYKGRN----QKQ 319

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
           G GLGL + + +++   G+  + S   KG+      P++    P D
Sbjct: 320 GIGLGLSICQNIIERLGGRIGVSSEQGKGSCFWCTLPIFP---PKD 362


>gi|29346228|ref|NP_809731.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|29338123|gb|AAO75925.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 908

 Score =  273 bits (699), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 116/668 (17%), Positives = 235/668 (35%), Gaps = 47/668 (7%)

Query: 162 DLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEK 221
           +   +P+ S+  E  G     + +      +         K      E     S V    
Sbjct: 124 EAKVVPLRSKEGEIIGH--ILLSNDVTAIKEAEFRTDESKKNLEMAMEAASMSSWVYDVY 181

Query: 222 YDIFSQQSPPPHL----RMKNKVSSLTEYYAHKDDVLKTEKY--PLLTSEESSLPEQE-- 273
              F+     P       +   ++ L          L ++     +L    +     E  
Sbjct: 182 KKTFNPLHGDPIAKKNTTLDQILNILHPQDHEPLIQLLSQLTNKEILQGNITLRFYNEEE 241

Query: 274 ---DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCP 330
               ++   +    +      +     +  E +             E        +    
Sbjct: 242 KQYRYYESMMRLSFEHFGKLLIIGTQLDITERMQMVKKTQELIAKRELAMKVSNIIHW-- 299

Query: 331 IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSD 390
              F          N     +  Y S   + I   +  +    + S  +AI+ +      
Sbjct: 300 --DFDVRTQEFEAYND---PINDYASDKLVSIQRYMDVIHPEDRSSSYDAIQSM--LSGK 352

Query: 391 RTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE 450
              I  + R+ T          +  +PF + +++  N+   G             ++E  
Sbjct: 353 ELTINFTCRMQTKYDESWQYCNIIGVPF-EKDEYGNNVRYTGFRQNISKLHQLNEELEER 411

Query: 451 VMQLCSILEATSDGIAIIN---REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
             ++    +    G++  +   +     + N  V+    +    I  + +          
Sbjct: 412 NYKMQLTFKTV--GMSYWDFEVKSKQFKAFNDPVNDF--HSENVITPEDYLHVTHPEDIE 467

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTK-EEKLLSLRIIIKKLPFSS-----CYSLTMHDI 561
           ++ +++  ++     + L       TK +++  +L +    +          Y+    + 
Sbjct: 468 LVRNHINYMI-GGTTKDLNFKFRSKTKWDKEWQTLIVTGIPVERDKKGNVIRYTGIKVNN 526

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           ++W++   +L   K  AE     KS FLA +SHEIRTPL AI+GFSE++           
Sbjct: 527 TKWEKMAQQLKELKDKAELSDRLKSAFLANMSHEIRTPLNAIVGFSELM----VYSEDPA 582

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
              EY + I  +  L+L ++ND+LD+SKIESG +    E  +L +  +E  +++Q     
Sbjct: 583 EKEEYMSIIQSNNELLLRLINDILDLSKIESGILERKRETFNLAKVCNELYTMIQPKITN 642

Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
             +  +   +     I  D   +KQ+ +N L+NA+  T SG  I +  +      + + V
Sbjct: 643 PDVEFQMDNSGPDCWIFLDRSRLKQVWMNYLTNAVKCTKSG-YIKMGYSIEREG-IRIYV 700

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            D+GVG+     E+    F ++        +GTGLGL +++A+++   G+    STP  G
Sbjct: 701 EDSGVGIPEELQERVFGRFQKL----NEFAQGTGLGLAISRAIIEGAGGEVGFTSTPGIG 756

Query: 802 TLIEIIFP 809
           +      P
Sbjct: 757 STFWAWIP 764



 Score = 41.6 bits (96), Expect = 0.60,   Method: Composition-based stats.
 Identities = 21/152 (13%), Positives = 45/152 (29%), Gaps = 22/152 (14%)

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
            SI       I I +  GI+ S N    +++G   +          +       ++  L 
Sbjct: 32  ESIYACLPMSIEIYDTNGILRSINEHALQMYGVTDK----TTVVNIVNLFNSPYVDETLK 87

Query: 515 EILSLDLRQTLEKI-----------TLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDI 561
             +       LE                  K   +   +++  +        + L  +D+
Sbjct: 88  NRIQRGEDIVLEFEYDFDRIKDNAYFSTQNKNTIIYEAKVVPLRSKEGEIIGHILLSNDV 147

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
           +  K+ + +   +KK  E          A +S
Sbjct: 148 TAIKEAEFRTDESKKNLEMAMEA-----ASMS 174


>gi|330806801|ref|YP_004351263.1| phosphate regulon sensor histidine kinase, Classic [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327374909|gb|AEA66259.1| Phosphate regulon sensor histidine kinase, Classic [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 440

 Score =  273 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 75/372 (20%), Positives = 152/372 (40%), Gaps = 36/372 (9%)

Query: 444 KRKMEIEVMQLCSILE-------ATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
           +R+ +    +L ++++       A  D + +++ +G +   NRA   L G        +P
Sbjct: 83  QRRDQRVRGRLQAVIDRVQESTAALKDAVIMLDSDGNLEWWNRAAETLLGLKTPQDSGQP 142

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556
            T  +                 L++                 + L I       ++ + +
Sbjct: 143 VTNLVRHPRFKEYFEQANYAEPLEIPSPTNDRLR--------IQLYITRY---GNNEHLM 191

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            + D++   Q +                + DF+A VSHE+RTPLT I G+ E + +    
Sbjct: 192 LVRDVTRIHQLE--------------QMRKDFIANVSHELRTPLTVICGYLETLLDNV-- 235

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
              NPR+      + +    +  ++NDLL ++K+E+       +PV +D+ +   +   Q
Sbjct: 236 EEVNPRWSRALQQMHQQSGRMQTLLNDLLLLAKLEATDYPSDNQPVPIDDLLQTIVEDAQ 295

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
             +  K+  I       + ++      ++    N++ NA+ +TP  G+I +         
Sbjct: 296 ELSGAKQQTITLEADAAV-QLKGSEAELRSAFSNLVFNAVKYTPEQGRIHVRWWGDEQG- 353

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
             L VRD+G+G+ +  L +  + F ++ +S+     GTGLGL + K ++  +  +  I S
Sbjct: 354 AHLSVRDSGIGIDSKHLPRLTERFYRVDSSRNSNTGGTGLGLAIVKHVLLRHRARMEISS 413

Query: 797 TPAKGTLIEIIF 808
            P  G+     F
Sbjct: 414 VPGHGSTFTCHF 425


>gi|300869376|ref|ZP_07113963.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300332603|emb|CBN59161.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 1011

 Score =  273 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 109/869 (12%), Positives = 241/869 (27%), Gaps = 166/869 (19%)

Query: 86   TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK---RQNT 142
             + +D  G +   +      +G  A ++IG           ID      + L+    Q  
Sbjct: 167  IFMLDTDGLVASWNSGAEGILGYRATEIIGSHFRCFYTQEEID-LGKPAEKLEIATAQGR 225

Query: 143  WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRL-- 200
            +  +      +G+  +  I + AL     +    GF    +               +L  
Sbjct: 226  FEDEGWRVRKDGSQFWANIIVTAL--RDESGILRGF--CQVTQDITEQKRAAEEKTQLIT 281

Query: 201  ---------------------------------------------DKKFSHLHEIKKGHS 215
                                                         +    H  E      
Sbjct: 282  SLQQSEKKFRTLYESTTDAVMLLDENGFLDCNPATLKLFGCNRKDEFTGKHPLEFSPRLQ 341

Query: 216  SVEKEKYDIFSQQSPPPHL-----------RMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
               ++   +  ++                 R+              D   K     ++  
Sbjct: 342  PGGEDSATLVQERMAAALSIGNCRFDWLHCRLDGSEFPAEVLLTSMDIGGKLGLQAVVRD 401

Query: 265  EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
                +  +E     N +   + Q   +    +    +           A     E    +
Sbjct: 402  ITYRVMAEEALKQANEDLERRVQERTSQLEEAIAQLQS-EIAERQKAEAQLRASEEKFSK 460

Query: 325  TVDKCPIPFFV--YSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
                 P P  +  ++ G     N SFL L  Y+  + I+       L             
Sbjct: 461  AFRSSPDPITITSFADGRFIEVNDSFLSLMDYRLDEVIDKTVADLNLWVN-------VED 513

Query: 383  PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
               L +            + ++    N + +            + M    +  +  D + 
Sbjct: 514  RTRLRQVLHEQEVVRNCEYELRMKSGNVVVVLLSAEII--NLGDEMCLLAVMTDITDRKA 571

Query: 443  NKRKMEIEVMQLCSILEATSDGIAII--NREGIILSTNRAVSKLFGYPVEDILR---KPF 497
             +  +      L +++            + +  +   +    +L GY  ++ +       
Sbjct: 572  VEEALRESQRALATLMGNLPGMAYRFRNDADRSLEFVSEGCYQLTGYHPDEFVGDRKLSL 631

Query: 498  TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT 557
            +          +   +   L  +    L         E K +     I     S      
Sbjct: 632  SEITHPEDQERLWTAVQIALQENRPYQLTYRITSKAGELKWIW-EQGIGVFSDSGDVLAL 690

Query: 558  ---MHDISEWKQEKNKLSHAKKIAEKESSHK-----------------------SDFLAR 591
               + DI+E KQ ++    ++    ++ +                            +A 
Sbjct: 691  EGLIVDITERKQAEDLAVRSQCELREQKTQLEKTLHELQQTQAQLIHTEKMSSLGQMIAG 750

Query: 592  VSHEIRTPLTAIIG-------FSEVIK---------------------NQRFGPLGNPRY 623
            V+HEI  P+ ++ G       ++E +                       +          
Sbjct: 751  VAHEINNPVNSVCGNLVHVGHYTEDLLNLVELYQQNYPQPVAAIQNTIEEIDLEFLLEDL 810

Query: 624  IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK- 682
             +  + +    + + +IV  L + S+ +  K +L    V++ E +   + ++Q     + 
Sbjct: 811  PKAMSSMHVGADRIREIVRSLRNFSRKDDTKTSL----VNIHEGIEGTLLILQSRLKARA 866

Query: 683  ---RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS-------------GGQII 726
                I +   +   +P I      + Q+ +N++ NAI                     I 
Sbjct: 867  AYPEISVVKEY-GKLPMIECYAGKINQVFMNLIGNAIDAIDEYNQNRSITEIKANPSLIK 925

Query: 727  ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV- 785
            I T  +S+  + +R+ D G GM+    ++   PF     +    G+GTGLGL ++  +V 
Sbjct: 926  IKTEVSSSNAI-IRISDNGPGMSEEISKQLFDPFFTTKPA----GKGTGLGLSISYQIVV 980

Query: 786  DANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
            + + GK    STP +G+   I  P+ + +
Sbjct: 981  EQHGGKLSCTSTPGQGSEFTIEIPIEEGA 1009



 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 66/550 (12%), Positives = 151/550 (27%), Gaps = 61/550 (11%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN--NHIGDLLKRQNTW 143
            +     G     +  L +  G  + + +  RL D+   L++DP   +     L+  +  
Sbjct: 38  IFQTTPDGRYISANPALARLYGYKSREEMMARLTDIEQQLYVDPKRRDEFVAALQEHDAV 97

Query: 144 YG-KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
              ++ ++  +G    + I   A  +   N E   + GF  V          A      +
Sbjct: 98  SDFESQIYRRDGNI--IWISEHARAVRGPNGELLYYEGF--VEDITQRKYAEAALSEERE 153

Query: 203 KFSHLHEIKKGHS----SVEKEKYDIFSQQSPPPHLRMKNKVSS-LTEYYAHKDDVLKTE 257
           +   + E  K ++      +       S        R    + S    +Y  ++  L   
Sbjct: 154 RLRLVIEGVKDYAIFMLDTDGLVASWNSGAEGILGYRATEIIGSHFRCFYTQEEIDLGKP 213

Query: 258 KYPLLTSEESSLPEQEDFH-TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF- 315
              L  +      E E +    + +Q+        L++ S     +       +      
Sbjct: 214 AEKLEIATAQGRFEDEGWRVRKDGSQFWANIIVTALRDESGILRGFCQVTQDITEQKRAA 273

Query: 316 ----------DEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365
                      + E       +       +         NP+ L L      D+      
Sbjct: 274 EEKTQLITSLQQSEKKFRTLYESTTDAVMLLDENGFLDCNPATLKLFGCNRKDEFTGKHP 333

Query: 366 LS-TLLDAPKLSDNNAIKPVMLY---------------RSDRTCIAASARLHTIQWNREN 409
           L  +    P   D+  +    +                R D +   A   L ++    + 
Sbjct: 334 LEFSPRLQPGGEDSATLVQERMAAALSIGNCRFDWLHCRLDGSEFPAEVLLTSMDIGGKL 393

Query: 410 SLAMTFIPFEKANQFPENM--------------------PQNGIEPEDVDTRINKRKMEI 449
            L              E +                        ++ E  + +  + ++  
Sbjct: 394 GLQAVVRDITYRVMAEEALKQANEDLERRVQERTSQLEEAIAQLQSEIAERQKAEAQLRA 453

Query: 450 EVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
              +      ++ D I I +  +G  +  N +   L  Y +++++ K             
Sbjct: 454 SEEKFSKAFRSSPDPITITSFADGRFIEVNDSFLSLMDYRLDEVIDKTVADLNLWVNVED 513

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568
                  +   ++ +  E      +    ++ L   I  L    C    M DI++ K  +
Sbjct: 514 RTRLRQVLHEQEVVRNCEYELRMKSGNVVVVLLSAEIINLGDEMCLLAVMTDITDRKAVE 573

Query: 569 NKLSHAKKIA 578
             L  +++  
Sbjct: 574 EALRESQRAL 583



 Score =  134 bits (336), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 39/278 (14%), Positives = 83/278 (29%), Gaps = 12/278 (4%)

Query: 312 SAYFDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLL 370
                + E       +      F     G    ANP+   L  YKS +++     L+ + 
Sbjct: 17  EEALHQMEAKYRSMFENAVSGIFQTTPDGRYISANPALARLYGYKSREEMMAR--LTDIE 74

Query: 371 DAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQ 430
               +      + V   +              I     N + ++           E +  
Sbjct: 75  QQLYVDPKRRDEFVAALQEHDAVSDFE---SQIYRRDGNIIWISEHARAVRGPNGELLYY 131

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNRAVSKLFGYPV 489
            G   +    +  +  +  E  +L  ++E   D  I +++ +G++ S N     + GY  
Sbjct: 132 EGFVEDITQRKYAEAALSEERERLRLVIEGVKDYAIFMLDTDGLVASWNSGAEGILGYRA 191

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
            +I+   F  F  Q    +      ++     +   E       K+       II+  L 
Sbjct: 192 TEIIGSHFRCFYTQEEIDLGKPA-EKLEIATAQGRFEDEGWRVRKDGSQFWANIIVTALR 250

Query: 550 FS----SCYSLTMHDISEWKQEKNKLSHAKKIAEKESS 583
                   +     DI+E K+   + +      ++   
Sbjct: 251 DESGILRGFCQVTQDITEQKRAAEEKTQLITSLQQSEK 288



 Score =  118 bits (295), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 54/541 (9%), Positives = 152/541 (28%), Gaps = 60/541 (11%)

Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL----RMKNKVSSLTEYYAH 249
                +++ K+  + E                S       L      +  ++ LT+    
Sbjct: 17  EEALHQMEAKYRSMFENAVSGIFQTTPDGRYISANPALARLYGYKSREEMMARLTDIEQQ 76

Query: 250 K--DDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
              D   + E    L   ++    +   +  + N     ++   ++  + E   Y     
Sbjct: 77  LYVDPKRRDEFVAALQEHDAVSDFESQIYRRDGNIIWISEHARAVRGPNGELLYYEGFVE 136

Query: 308 HPSLSAYFDEGENLTPETVDKCPIPF------FVYSHGNLFYANPSFLLLTKYKSVDDIE 361
             +   Y +   +   E +              + + G +   N     +  Y++ + I 
Sbjct: 137 DITQRKYAEAALSEERERLRLVIEGVKDYAIFMLDTDGLVASWNSGAEGILGYRATEIIG 196

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                       ++      + + +  +             ++ +     A   I     
Sbjct: 197 --SHFRCFYTQEEIDLGKPAEKLEIATAQGR---FEDEGWRVRKDGSQFWA-NIIVTALR 250

Query: 422 NQFPENMPQNGIEPEDVDTRINKRK-------MEIEVMQLCSILEATSDGIAIINREGII 474
           ++         +  +  + +    +       ++    +  ++ E+T+D + +++  G  
Sbjct: 251 DESGILRGFCQVTQDITEQKRAAEEKTQLITSLQQSEKKFRTLYESTTDAVMLLDENG-F 309

Query: 475 LSTNRAVSKLFGYPV-EDILRKP---FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530
           L  N A  KLFG    ++   K    F+  L+             + +           L
Sbjct: 310 LDCNPATLKLFGCNRKDEFTGKHPLEFSPRLQPGGEDSATLVQERMAAALSIGNCRFDWL 369

Query: 531 GSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDF 588
               +       +++  +           + DI+     +  L  A +  E+    ++  
Sbjct: 370 HCRLDGSEFPAEVLLTSMDIGGKLGLQAVVRDITYRVMAEEALKQANEDLERRVQERTSQ 429

Query: 589 LARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDIS 648
           L     +++         SE+ + Q+          +++     S + +   +    D  
Sbjct: 430 LEEAIAQLQ---------SEIAERQKAEAQLRASEEKFSKAFRSSPDPIT--ITSFADGR 478

Query: 649 KIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIA 708
            IE     L      LDE + + ++ +        + +             D   ++Q+ 
Sbjct: 479 FIEVNDSFLSLMDYRLDEVIDKTVADL-------NLWVNVE----------DRTRLRQVL 521

Query: 709 L 709
            
Sbjct: 522 H 522



 Score = 63.1 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/317 (8%), Positives = 86/317 (27%), Gaps = 30/317 (9%)

Query: 19  KGNTQDLSKKKIDNGFETEKSKKE--NPCHDSFEQSNFTDQNQESVSNTNYLDSENTFVF 76
           K   +DL ++  +   + E++  +  +   +  +       ++E  S          F  
Sbjct: 413 KQANEDLERRVQERTSQLEEAIAQLQSEIAERQKAEAQLRASEEKFSKA--------FRS 464

Query: 77  DPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL 136
            P P T+       A G   E+++     +     ++I   + D++  ++++    +  +
Sbjct: 465 SPDPITITSF----ADGRFIEVNDSFLSLMDYRLDEVIDKTVADLNLWVNVEDRTRLRQV 520

Query: 137 LKRQNTWYGKTTLWP-IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRA 195
           L  Q              G  + V +    + +              ++           
Sbjct: 521 LHEQEVVRNCEYELRMKSGNVVVVLLSAEIINLGDE------MCLLAVMTDITDRKAVEE 574

Query: 196 LGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMK---------NKVSSLTEY 246
             +   +  + L     G +   +   D   +       ++          ++  SL+E 
Sbjct: 575 ALRESQRALATLMGNLPGMAYRFRNDADRSLEFVSEGCYQLTGYHPDEFVGDRKLSLSEI 634

Query: 247 YAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHR 306
              +D         +   E           +         +    + ++S +        
Sbjct: 635 THPEDQERLWTAVQIALQENRPYQLTYRITSKAGELKWIWEQGIGVFSDSGDVLALEGLI 694

Query: 307 NHPSLSAYFDEGENLTP 323
              +     ++    + 
Sbjct: 695 VDITERKQAEDLAVRSQ 711


>gi|108763375|ref|YP_634852.1| sensor histidine kinase/response regulator [Myxococcus xanthus DK
            1622]
 gi|108467255|gb|ABF92440.1| sensor histidine kinase/response regulator [Myxococcus xanthus DK
            1622]
          Length = 2478

 Score =  273 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 72/260 (27%), Positives = 126/260 (48%), Gaps = 14/260 (5%)

Query: 563  EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
            E ++ +  L    +     S +KS+FLA +SHE+RTPL +++  ++++ + + G L   +
Sbjct: 1752 EVERARVSLEEKAEQLTVISKYKSEFLANMSHELRTPLNSLLILAKLLSDNKDGNLST-K 1810

Query: 623  YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             +EYAN I  SG  +L ++N++LD+SK+E+GKM +    + L E            A +K
Sbjct: 1811 QVEYANTIYASGGDLLSLINEILDLSKVEAGKMQVEPRDIVLTELNQFIERSFLPVAEQK 1870

Query: 683  RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTT---------- 730
             +          PR I  D + ++Q+  N+LSNA  FT  G  Q+ +             
Sbjct: 1871 GLSFTVEVGPGAPRHIRTDPQRLQQVLKNLLSNAFKFTDEGSVQLKVKLAEVGTHFDHEV 1930

Query: 731  HTSNEEVI-LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
               +  V+   V DTG+G+   +     + F Q   S   +  GTGLGL +++ +     
Sbjct: 1931 LRRSRYVLGFAVSDTGIGIARDKQRLIFEAFQQADGSTARKYGGTGLGLSISREIAKLLG 1990

Query: 790  GKFYIFSTPAKGTLIEIIFP 809
            G+  + S P +G+   +  P
Sbjct: 1991 GEIQVTSEPGRGSTFTLYLP 2010


>gi|327480106|gb|AEA83416.1| sensor histidine kinase/response regulator [Pseudomonas stutzeri
           DSM 4166]
          Length = 1135

 Score =  273 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 70/275 (25%), Positives = 139/275 (50%), Gaps = 8/275 (2%)

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
            + +        L M +I   ++   +L  AK+ +E  ++ KS ++  +SHE+RTPL +I
Sbjct: 641 HVAQQESDRQTHLLMQEIEAHRKTDEQLQKAKEASEAANAAKSRYVTGLSHELRTPLNSI 700

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +G+++++          PR+ +    I RSG  +L +++ LLD++KIE+GK+NL    ++
Sbjct: 701 LGYAQILLRDEAMA---PRHKDALGTIHRSGAHLLSLIDGLLDVAKIEAGKLNLEQSEIA 757

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSG 722
             E + +   ++   A EK +         +P  +  D + V+QI +N+L NA+ +T +G
Sbjct: 758 FPEFLQQLRQMIAPQAEEKGLRFHFESQGRMPAVVRGDEKRVRQILINLLGNAVRYTDAG 817

Query: 723 GQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAK 782
             I +  ++   E     + DTG+G+   ++E+  +PF +       +  G GLGL + +
Sbjct: 818 S-ITLRASYL-RETATFEIADTGIGIPAEQIERLFQPFERGNPL--RQDNGLGLGLTITR 873

Query: 783 AMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPH 817
            +     G+  + S   +GT+ ++   L +   P 
Sbjct: 874 MLTALMGGELSVKSQEGQGTVFQLRLFLSEVRVPQ 908


>gi|241204212|ref|YP_002975308.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240858102|gb|ACS55769.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 511

 Score =  273 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 76/529 (14%), Positives = 180/529 (34%), Gaps = 70/529 (13%)

Query: 322 TPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
               ++  P    +    G +   N   L +            G +   ++   L     
Sbjct: 6   FESILESLPQGIVLLDPAGTVTAFNSRTLDILGLP-------QGAIRKGMNIHGLPGAAD 58

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
            + V   RS                +      ++       +             +    
Sbjct: 59  CRSVASRRSTAGGPP---TSQFALSDGG---MVSLTCAPSRDG-----GWILSYEDISTL 107

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
              +  +  +  +  + L     G+ + +    ++  N + ++++  P  D+L +P T  
Sbjct: 108 IRVEDSLTEQHRRFDAALSNMPHGLCMFDSTKNLILCNASYARMYNLP--DLLTQPGTPL 165

Query: 501 LE-----------QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
           ++               +     + E  +     +   +      + +++ +     +  
Sbjct: 166 VDILAYRSREGNGPADTAAYFDVVFEATARGAPASQNIVL----ADGRVIKITHNPMQT- 220

Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKE-------------------------SSH 584
               Y  T  D+++  +   +L       E                           +  
Sbjct: 221 --GGYVATHEDVTKTVRLAEELRRHHDQLEATVKSRTAEVERQARELERMLAQERNINEL 278

Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
           +  F+A  SHE RTPL  I   ++ +  +R G +      +  + I  S   ++D++  +
Sbjct: 279 QRQFVAMASHEFRTPLAIIDAAAQRLLRKR-GAVEPEFLSDKVDQIRASVTRIVDLMESI 337

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704
           L   ++++GK+++ ++  +L   +          A   R+++          I AD R++
Sbjct: 338 LSAGRLDTGKIDISYDACALRSLIKTCCERQSTIAKSHRLVL--DIDGLPEFIDADPRTL 395

Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764
            Q+  N+LSNA+ + P   +I + T       V + + D GVG+   ++ +  + + +  
Sbjct: 396 AQVFTNLLSNAVKYAPGTSEIRV-TAWAETGNVKVSISDDGVGIDAEDVPRLFQRYFRAR 454

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
            S  I   GTG+GL L K +V+ + G   + S    G+   +  P+  +
Sbjct: 455 TSTGIA--GTGIGLNLVKQIVELHNGSIEVRSARGCGSTFIVTLPIKRS 501


>gi|71905865|ref|YP_283452.1| PAS [Dechloromonas aromatica RCB]
 gi|71845486|gb|AAZ44982.1| PAS protein [Dechloromonas aromatica RCB]
          Length = 1214

 Score =  273 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 80/250 (32%), Positives = 135/250 (54%), Gaps = 9/250 (3%)

Query: 563 EWKQEKNKLSH-AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           E ++  + +   A++ AE  +  +++FLA +SHEIRTPL A+IG + ++   + G     
Sbjct: 555 ERERTLSAMRELARQEAEGLARARAEFLANMSHEIRTPLNAVIGLAYLLLQNKLG----E 610

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
           R +EY   I+ +G L+L IVND+LD SKI++GKM L      LD+ +    SLV+  A E
Sbjct: 611 REMEYVKRIEGAGKLLLAIVNDVLDFSKIDAGKMQLEESSFQLDDLLDNLSSLVRTRAQE 670

Query: 682 KRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVI- 738
           K +++    A +  + +  D   + QI +N++SNAI FT  G   + I      +  +  
Sbjct: 671 KNLVLEYVVAPDATQNLRGDALRLSQILINLVSNAIKFTAEGSITVFIDVASNKDNRIEL 730

Query: 739 -LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
             R++DTG+GM+  + +   + F Q  +S   +  GTGLGL ++K +++   G  +  S 
Sbjct: 731 EFRIQDTGIGMSAEQTDNLFRAFSQADSSVTRKFGGTGLGLAISKRLIEMMGGTIWAHSV 790

Query: 798 PAKGTLIEII 807
           P  G+     
Sbjct: 791 PQVGSTFSFR 800



 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 53/391 (13%), Positives = 114/391 (29%), Gaps = 40/391 (10%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDL---LKRQNTWY 144
             D  G +  ++ +  +  G    ++IG     +       P     DL   L+    W 
Sbjct: 23  RTDNQGRIVYVNPDFIEISGFSEAELIGQPHNMIRHPD--MPPEVFADLWRDLRAGRPWI 80

Query: 145 GKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
           G        G      ++    PI+ ++ E SG+        +R +           +K 
Sbjct: 81  GLIKNRCKNGDAY--WVEAHVSPIWDKD-EISGYMSMRR-KASRGEIQAAEQTYAAMQKD 136

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
           +    I +  ++ +++ +           L +K  ++SLT                +  +
Sbjct: 137 ADNAPIFEHGAASQRKPWRSLHNAFSNAPLAIKFILASLTAAALVLGLTTYFLASHVSRT 196

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
            +      +  H ++L +             + E  + L+ R + ++    +        
Sbjct: 197 LDE-NARNQLKHDVSLLRAAVSARVEGANIEAVEYSKVLAKRVYAAIGGQKNASRQSLEA 255

Query: 325 TVDKC------PIPFFVYSH---GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
            ++K       PI  F++     G +F   P         +VDD   +   S L      
Sbjct: 256 MIEKMSASPGNPIDIFLHDLRGVGTIFILTPEGFQRRMTTAVDDHGGSPVGSYLTTDH-- 313

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
                  P  L  S        AR+   Q+                +     +    I  
Sbjct: 314 -------PAYLQLSAGQTFVGPARVFNRQY--------VTRYTPILDAQGTVVGATVIGI 358

Query: 436 EDVDT----RINKRKMEIEVMQLCSILEATS 462
           +  +     +   R M++       I++ T 
Sbjct: 359 DIGEQLDTLKRQIRSMQVGETGYYYIVDTTP 389



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/120 (12%), Positives = 37/120 (30%), Gaps = 3/120 (2%)

Query: 465 IAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT 524
           I+  + +G I+  N    ++ G+   +++ +P  +    + P  +   L   L       
Sbjct: 21  ISRTDNQGRIVYVNPDFIEISGFSEAELIGQPHNMIRHPDMPPEVFADLWRDLRAGRPWI 80

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFS-SCYSLTMHDIS--EWKQEKNKLSHAKKIAEKE 581
                     +   +   +         S Y       S  E +  +   +  +K A+  
Sbjct: 81  GLIKNRCKNGDAYWVEAHVSPIWDKDEISGYMSMRRKASRGEIQAAEQTYAAMQKDADNA 140


>gi|60680057|ref|YP_210201.1| putative two-component histidine sensor kinase [Bacteroides
           fragilis NCTC 9343]
 gi|60491491|emb|CAH06243.1| putative two-component histidine sensor kinase [Bacteroides
           fragilis NCTC 9343]
          Length = 411

 Score =  273 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 90/377 (23%), Positives = 158/377 (41%), Gaps = 33/377 (8%)

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ------------ 503
           +IL + +    +IN + +++ TN     L G   E          L              
Sbjct: 44  TILRSMNACFILINSDLVVIRTN--YYDLSGISEEPESSGRVGDLLNCKNAVRSGGGCGA 101

Query: 504 ---NTPSVMNHYLTEILSLDLR-QTLEKITLGSTKEEK-----LLSLRIIIKKLPFSSCY 554
                  ++ H +            LE      + + +      +S+             
Sbjct: 102 HKNCENCMIRHTIENAFCHKKGFHKLEASMRLLSSDHQQIIPCDVSVSGTYLNNEGHEQM 161

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
            LT++DI+E K  +  L+  K+ A      KS F+A +SHEIRTPL AI+GFS ++    
Sbjct: 162 LLTVYDITELKNMQRLLNIEKENAVSAEKLKSAFIANMSHEIRTPLNAIVGFSGLLA--- 218

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                +     Y + +  + + +L IV D+LD+SKIESG ++ H+    +++ +     +
Sbjct: 219 -SADDDTEKKMYLDIVAENNDRLLQIVTDVLDLSKIESGSLDFHYSEFDVNDLLCALHGI 277

Query: 675 VQLYANEK-RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
           + +   +K  I +      +   I ++   + QI  N++ NA+ FT SG +I        
Sbjct: 278 LNIRLKDKPEIKLICKAGTDEWIIYSEQHRIVQIITNLVHNAMKFTHSG-EICFGCRPQG 336

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
            +E+   V DTG+G+   E +K    F ++         GTGLGL L++ +V    G+  
Sbjct: 337 EDEIYFYVSDTGIGIPAGEQDKIFDRFTKLD----HEVPGTGLGLTLSQTIVQNLGGEMG 392

Query: 794 IFSTPAKGTLIEIIFPL 810
           + S   KG+      PL
Sbjct: 393 VESEVTKGSTFWFTLPL 409


>gi|85716120|ref|ZP_01047096.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A]
 gi|85697119|gb|EAQ35001.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A]
          Length = 511

 Score =  273 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 91/508 (17%), Positives = 192/508 (37%), Gaps = 29/508 (5%)

Query: 318 GENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
            +      +DK  +  +         + +    +L         E A     L  +    
Sbjct: 14  RDEELQRGIDKSGVGIWDLDLSTRNLFWSSPARMLFGVS-----ENAPVSYDLFLSLLQP 68

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
           ++ A     + RS +T      + + I    E    +        N+       +G+  +
Sbjct: 69  EDRARTESAIQRSIKTGCRFDLQ-YRILGASERDRWIRARGGLVTNEGGVPRRLSGVILD 127

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
             D ++ +  +      L SIL+   D + +I+  GI+   + A  +LFGY   +++ + 
Sbjct: 128 IDDQKLIEEALIAREDHLRSILDTIPDAMIVIDDHGIMQHFSSAAERLFGYSEREVIGRN 187

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQT--LEKITLGSTKEEKLLSLRIIIKKLPFSS-- 552
            ++ + +   S  +HYL    S   R    + ++  G   +     + + + ++      
Sbjct: 188 VSILMPEPDSSRHDHYLARYQSTGERHIIGIGRVVTGKRLDGATFPMHLSVGEMHSGGKR 247

Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESS--HKSDFLARVSHEIRTPLTAIIGFSEVI 610
            ++  + D++E +Q + KL   +      S      +  + ++HE+  PL AI  +    
Sbjct: 248 HFTGFVRDLTEHQQTQAKLQELQSELVHVSRLSAMGEMASTLAHELNQPLAAISNYMNGA 307

Query: 611 KNQRFGPLGNP--RYIEYANYIDRSGNLVLDIVNDLLDI-SKIESGKMNLHFEPVSLDEA 667
           +            +     +           I+  L D  S+ ES          SL + 
Sbjct: 308 RRLLTTDADRNITKIERALDCAADQAIRAGQIIRRLRDFVSRRES-----EKRVESLAKL 362

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS--GGQI 725
           + EA +L    A E+ +++R        R+L D   ++Q+ +N+  NA+         ++
Sbjct: 363 MEEAGALGLAGAREQNVMLRLELDAECDRVLVDRVQIQQVLVNLFRNALEAMAESPKREL 422

Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
             S+   S+E V L V DTG G      E   + F     +      G G+GLP+++++V
Sbjct: 423 TASSKKLSDEMVELSVSDTGHGFNEAAAESLFETFFTTKKT------GMGVGLPISRSIV 476

Query: 786 DANMGKFYIFSTPAKGTLIEIIFPLYDT 813
           +A+ G+ +  +  + G    +  P+  T
Sbjct: 477 EAHGGRMWAETNDSGGATFRLTLPIAAT 504



 Score = 57.7 bits (138), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 30/299 (10%), Positives = 78/299 (26%), Gaps = 19/299 (6%)

Query: 249 HKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY----LS 304
            +D                    Q      +      +   G + N            L 
Sbjct: 68  PEDRARTESAIQRSIKTGCRFDLQYRILGASERDRWIRARGGLVTNEGGVPRRLSGVILD 127

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFYANPSFLLLTKYKSVDDIEIA 363
             +   +       E+     +D  P     +  HG + + + +   L  Y   + I   
Sbjct: 128 IDDQKLIEEALIAREDHLRSILDTIPDAMIVIDDHGIMQHFSSAAERLFGYSEREVIGRN 187

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
             +  L+  P  S ++          +R  I     +   + +                 
Sbjct: 188 VSI--LMPEPDSSRHDHYLARYQSTGERHIIGIGRVVTGKRLDGATFPM---HLSVGEMH 242

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI--LEATSDGIAIINREGIILSTNRAV 481
                   G   +  + +  + K++    +L  +  L A  +  + +  E      N+ +
Sbjct: 243 SGGKRHFTGFVRDLTEHQQTQAKLQELQSELVHVSRLSAMGEMASTLAHEL-----NQPL 297

Query: 482 SKLFGYP--VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
           + +  Y      +L       + +   ++       I +  + + L         E+++
Sbjct: 298 AAISNYMNGARRLLTTDADRNITKIERALDCAADQAIRAGQIIRRLRDFVSRRESEKRV 356



 Score = 43.5 bits (101), Expect = 0.16,   Method: Composition-based stats.
 Identities = 26/247 (10%), Positives = 68/247 (27%), Gaps = 10/247 (4%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID HG ++  S    +  G    ++IG  +  +        ++H     +     +    
Sbjct: 159 IDDHGIMQHFSSAAERLFGYSEREVIGRNVSILMPEPDSSRHDHYLARYQSTGERHIIGI 218

Query: 149 LWPIEG---TNLYVPIDLA-ALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
              + G        P+ L+         R F+GF     V         +A  + L  + 
Sbjct: 219 GRVVTGKRLDGATFPMHLSVGEMHSGGKRHFTGF-----VRDLTEHQQTQAKLQELQSEL 273

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
            H+  +           +++    +   +     +    T+   +    ++         
Sbjct: 274 VHVSRLSAMGEMASTLAHELNQPLAAISNYMNGARRLLTTDADRN-ITKIERALDCAADQ 332

Query: 265 EESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPE 324
              +             + ++K+     +   +     L+     ++    +        
Sbjct: 333 AIRAGQIIRRLRDFVSRRESEKRVESLAKLMEEAGALGLAGAREQNVMLRLELDAECDRV 392

Query: 325 TVDKCPI 331
            VD+  I
Sbjct: 393 LVDRVQI 399


>gi|330447454|ref|ZP_08311103.1| HAMP domain protein [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328491645|dbj|GAA05600.1| HAMP domain protein [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 1114

 Score =  273 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 88/339 (25%), Positives = 157/339 (46%), Gaps = 10/339 (2%)

Query: 482 SKLFGYPV-EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
            K+FG+ +   IL   F   L  N+ +     LT          L++I  G+ + +++  
Sbjct: 337 EKIFGFGMITAILLVIFVSHLLSNSITAPLLRLTWAAEKASGGDLDQIIEGTERSDEIGR 396

Query: 541 LRIIIKK----LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEI 596
           L I   +    +        T +D  E +Q    +       +     K +FLA  SHE+
Sbjct: 397 LAISFSRMQRSIREKIGLIKTQND--ELEQSLKIIQQKNDELQTADKLKDEFLATTSHEL 454

Query: 597 RTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           RTPL  ++G +E +     GPL +P+  +    +  SG  + ++V+DLLD  K+  G ++
Sbjct: 455 RTPLHGMVGIAESLLAGANGPLQDPQRRQ-LEMLINSGQRLTNLVDDLLDYHKMRYGDLD 513

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716
           +H   + L  AV   + L       K + I      ++P + AD + ++Q+  N++ NAI
Sbjct: 514 IHRHAIDLSAAVRLVLELSSHLLGNKPVRIINQIPADLPLVDADEQRLEQVLYNLVGNAI 573

Query: 717 HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
            +T  G +IIIS T     ++ ++V DTG G+ + +LE   +P  Q  +      +G GL
Sbjct: 574 KYTSEG-KIIISATVLEQ-QLRVQVVDTGQGIPSEQLEHIFEPLIQANSGSANYRQGAGL 631

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
           GL +++ +++   G+ Y+ S P  GT       L   + 
Sbjct: 632 GLSISRQLIELMGGRLYVSSQPMVGTTFSFTLNLATEAQ 670



 Score = 55.4 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 32/81 (39%)

Query: 431 NGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVE 490
             ++ E       +  +     +L  +L++T++ I  +  EG I   N A  KLF  P E
Sbjct: 835 QSLQQEIHRREQVEISLIEAQSRLLGLLDSTTEAIICVQNEGRIRYVNSAAGKLFKRPPE 894

Query: 491 DILRKPFTVFLEQNTPSVMNH 511
            + R   +  L    P  +  
Sbjct: 895 QLERHTISDILAVELPDTITD 915


>gi|327484386|gb|AEA78793.1| Sensor histidine kinase [Vibrio cholerae LMA3894-4]
          Length = 734

 Score =  273 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 67/256 (26%), Positives = 119/256 (46%), Gaps = 15/256 (5%)

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           L   K  A+  +  KS FLA +SHEIRTP+  ++G ++++           +  ++   +
Sbjct: 341 LEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILLKDELTS----KQRQHLTSL 396

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
             SG  ++ ++N++LD SKIE GK  L      L   +    S+      EK +  + + 
Sbjct: 397 YESGEHMMSLLNEILDYSKIEQGKFELDHSAFPLKSIIGSIKSIYSSLCVEKGLKFQLNS 456

Query: 691 A-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT---SNEEVILRVRDTGV 746
              +      D   ++QI  N+LSNA+ FT +G  + I  +         +I++V+DTG+
Sbjct: 457 EITDGRWYYGDKARLRQIIFNLLSNAVKFTEAGF-VAIGLSEESCDEENYLIIKVQDTGI 515

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+    L +  +PF Q  +    R  GTGLGL + K + +   G   + S   +G+  ++
Sbjct: 516 GIAQESLGRIFRPFEQAESHTTRRFGGTGLGLAIVKQIAELMNGTVLVQSEVGQGSCFKV 575

Query: 807 IF------PLYDTSHP 816
                   P+ +   P
Sbjct: 576 RVKLAITEPVTEDVKP 591


>gi|153800379|ref|ZP_01954965.1| sensor histidine kinase [Vibrio cholerae MZO-3]
 gi|124124005|gb|EAY42748.1| sensor histidine kinase [Vibrio cholerae MZO-3]
          Length = 736

 Score =  273 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 67/256 (26%), Positives = 119/256 (46%), Gaps = 15/256 (5%)

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           L   K  A+  +  KS FLA +SHEIRTP+  ++G ++++           +  ++   +
Sbjct: 343 LEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILLKDELTS----KQRQHLTSL 398

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
             SG  ++ ++N++LD SKIE GK  L      L   +    S+      EK +  + + 
Sbjct: 399 YESGEHMMSLLNEILDYSKIEQGKFELDHSAFPLKSIIGSIKSIYSSLCVEKGLKFQLNS 458

Query: 691 A-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT---SNEEVILRVRDTGV 746
              +      D   ++QI  N+LSNA+ FT +G  + I  +         +I++V+DTG+
Sbjct: 459 EITDGRWYYGDKARLRQIIFNLLSNAVKFTEAGF-VAIGLSEESCDEENYLIIKVQDTGI 517

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+    L +  +PF Q  +    R  GTGLGL + K + +   G   + S   +G+  ++
Sbjct: 518 GIAQESLGRIFRPFEQAESHTTRRFGGTGLGLAIVKQIAELMNGTVLVQSEVGQGSCFKV 577

Query: 807 IF------PLYDTSHP 816
                   P+ +   P
Sbjct: 578 RVKLAITEPVTEDVKP 593


>gi|121585863|ref|ZP_01675657.1| sensor histidine kinase [Vibrio cholerae 2740-80]
 gi|121550001|gb|EAX60019.1| sensor histidine kinase [Vibrio cholerae 2740-80]
          Length = 736

 Score =  273 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 67/256 (26%), Positives = 119/256 (46%), Gaps = 15/256 (5%)

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           L   K  A+  +  KS FLA +SHEIRTP+  ++G ++++           +  ++   +
Sbjct: 343 LEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILLKDELTS----KQRQHLTSL 398

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
             SG  ++ ++N++LD SKIE GK  L      L   +    S+      EK +  + + 
Sbjct: 399 YESGEHMMSLLNEILDYSKIEQGKFELDHSAFPLKSIIGSIKSIYSSLCVEKGLKFQLNS 458

Query: 691 A-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT---SNEEVILRVRDTGV 746
              +      D   ++QI  N+LSNA+ FT +G  + I  +         +I++V+DTG+
Sbjct: 459 EITDGRWYYGDKARLRQIIFNLLSNAVKFTEAGF-VAIGLSEESCDEENYLIIKVQDTGI 517

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+    L +  +PF Q  +    R  GTGLGL + K + +   G   + S   +G+  ++
Sbjct: 518 GIAQESLGRIFRPFEQAESHTTRRFGGTGLGLAIVKQIAELMNGTVLVQSEVGQGSCFKV 577

Query: 807 IF------PLYDTSHP 816
                   P+ +   P
Sbjct: 578 RVKLAITEPVTEDVKP 593


>gi|255745407|ref|ZP_05419356.1| sensor histidine kinase [Vibrio cholera CIRS 101]
 gi|262149050|ref|ZP_06028193.1| sensor histidine kinase [Vibrio cholerae INDRE 91/1]
 gi|262169820|ref|ZP_06037511.1| sensor histidine kinase [Vibrio cholerae RC27]
 gi|255737237|gb|EET92633.1| sensor histidine kinase [Vibrio cholera CIRS 101]
 gi|262022054|gb|EEY40764.1| sensor histidine kinase [Vibrio cholerae RC27]
 gi|262031150|gb|EEY49771.1| sensor histidine kinase [Vibrio cholerae INDRE 91/1]
          Length = 734

 Score =  273 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 67/256 (26%), Positives = 119/256 (46%), Gaps = 15/256 (5%)

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           L   K  A+  +  KS FLA +SHEIRTP+  ++G ++++           +  ++   +
Sbjct: 341 LEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILLKDELTS----KQRQHLTSL 396

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
             SG  ++ ++N++LD SKIE GK  L      L   +    S+      EK +  + + 
Sbjct: 397 YESGEHMMSLLNEILDYSKIEQGKFELDHSAFPLKSIIGSIKSIYSSLCVEKGLKFQLNS 456

Query: 691 A-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT---SNEEVILRVRDTGV 746
              +      D   ++QI  N+LSNA+ FT +G  + I  +         +I++V+DTG+
Sbjct: 457 EITDGRWYYGDKARLRQIIFNLLSNAVKFTEAGF-VAIGLSEESCDEENYLIIKVQDTGI 515

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+    L +  +PF Q  +    R  GTGLGL + K + +   G   + S   +G+  ++
Sbjct: 516 GIAQESLGRIFRPFEQAESHTTRRFGGTGLGLAIVKQIAELMNGTVLVQSEVGQGSCFKV 575

Query: 807 IF------PLYDTSHP 816
                   P+ +   P
Sbjct: 576 RVKLAITEPVTEDVKP 591


>gi|15641833|ref|NP_231465.1| sensor histidine kinase [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|147674034|ref|YP_001217367.1| sensor histidine kinase [Vibrio cholerae O395]
 gi|153819807|ref|ZP_01972474.1| sensor histidine kinase [Vibrio cholerae NCTC 8457]
 gi|227081960|ref|YP_002810511.1| sensor histidine kinase [Vibrio cholerae M66-2]
 gi|229508072|ref|ZP_04397577.1| sensor histidine kinase [Vibrio cholerae BX 330286]
 gi|229511689|ref|ZP_04401168.1| sensor histidine kinase [Vibrio cholerae B33]
 gi|229518828|ref|ZP_04408271.1| sensor histidine kinase [Vibrio cholerae RC9]
 gi|229607633|ref|YP_002878281.1| sensor histidine kinase [Vibrio cholerae MJ-1236]
 gi|254848917|ref|ZP_05238267.1| sensor histidine kinase [Vibrio cholerae MO10]
 gi|298498130|ref|ZP_07007937.1| sensor histidine kinase [Vibrio cholerae MAK 757]
 gi|9656358|gb|AAF94979.1| sensor histidine kinase [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|126509646|gb|EAZ72240.1| sensor histidine kinase [Vibrio cholerae NCTC 8457]
 gi|146315917|gb|ABQ20456.1| sensor histidine kinase [Vibrio cholerae O395]
 gi|227009848|gb|ACP06060.1| sensor histidine kinase [Vibrio cholerae M66-2]
 gi|227013730|gb|ACP09940.1| sensor histidine kinase [Vibrio cholerae O395]
 gi|229343517|gb|EEO08492.1| sensor histidine kinase [Vibrio cholerae RC9]
 gi|229351654|gb|EEO16595.1| sensor histidine kinase [Vibrio cholerae B33]
 gi|229355577|gb|EEO20498.1| sensor histidine kinase [Vibrio cholerae BX 330286]
 gi|229370288|gb|ACQ60711.1| sensor histidine kinase [Vibrio cholerae MJ-1236]
 gi|254844622|gb|EET23036.1| sensor histidine kinase [Vibrio cholerae MO10]
 gi|297542463|gb|EFH78513.1| sensor histidine kinase [Vibrio cholerae MAK 757]
          Length = 736

 Score =  273 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 67/256 (26%), Positives = 119/256 (46%), Gaps = 15/256 (5%)

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           L   K  A+  +  KS FLA +SHEIRTP+  ++G ++++           +  ++   +
Sbjct: 343 LEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILLKDELTS----KQRQHLTSL 398

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
             SG  ++ ++N++LD SKIE GK  L      L   +    S+      EK +  + + 
Sbjct: 399 YESGEHMMSLLNEILDYSKIEQGKFELDHSAFPLKSIIGSIKSIYSSLCVEKGLKFQLNS 458

Query: 691 A-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT---SNEEVILRVRDTGV 746
              +      D   ++QI  N+LSNA+ FT +G  + I  +         +I++V+DTG+
Sbjct: 459 EITDGRWYYGDKARLRQIIFNLLSNAVKFTEAGF-VAIGLSEESCDEENYLIIKVQDTGI 517

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+    L +  +PF Q  +    R  GTGLGL + K + +   G   + S   +G+  ++
Sbjct: 518 GIAQESLGRIFRPFEQAESHTTRRFGGTGLGLAIVKQIAELMNGTVLVQSEVGQGSCFKV 577

Query: 807 IF------PLYDTSHP 816
                   P+ +   P
Sbjct: 578 RVKLAITEPVTEDVKP 593


>gi|89094461|ref|ZP_01167401.1| two-component system sensor protein [Oceanospirillum sp. MED92]
 gi|89081353|gb|EAR60585.1| two-component system sensor protein [Oceanospirillum sp. MED92]
          Length = 1314

 Score =  273 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 99/662 (14%), Positives = 216/662 (32%), Gaps = 61/662 (9%)

Query: 198  KRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTE 257
             RL  +      +   +  + +              +  +  +      +A     L+  
Sbjct: 520  LRLVDRIQASAFVDVYNKDLTETARQFGLVTVGDLQMLTERFLGISRTQHAFTGFALQRG 579

Query: 258  KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK--ESFEYLSHRNHPSLSAYF 315
              P L+ ++++    +    +             L +  +  +             S   
Sbjct: 580  DEPPLSGDKATPELIQFTERLLAGVIGASSARIVLASTLRGKDMHIGDVVTIVDEASQAL 639

Query: 316  DEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
                +L   T++   +   V      L   N  ++ +  Y                    
Sbjct: 640  RFNRSLLQSTIENISLGISVVDQQMRLVAWNRVYVEMFDYPEGLICVGRPIEEVFRFNAM 699

Query: 375  LSDNNA-IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGI 433
              +         + +  R   +A    +         L +   P                
Sbjct: 700  KGEYGPGNNDEQVKKRLRVLKSAKRHSYERFRPDGTVLEVRGNPMPNG-------GYVNT 752

Query: 434  EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
              +  + +  +  +      +    +     IA ++ E   L  N+A ++ F      I 
Sbjct: 753  YMDITNHKHVEDALRESEQNIRIYTDNVPVLIAYLDPERRYLFINKAYAETFDLDRTSIS 812

Query: 494  RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI--IIKKLPFS 551
             +     + +    + + Y+T  L    RQ  E         ++   ++    I +    
Sbjct: 813  GQACHKIMTEEEYELRSPYITAALE-GKRQRFETTLPSKDGADRFAEVKYIPHIGEYGDV 871

Query: 552  SCYSLTMHDISEWKQE---------------------------------------KNKLS 572
              Y     DI+E ++                                        +++L 
Sbjct: 872  LGYFTLYQDITERRKAEKALKETNENLEQRVRERTHALSVVNKELRKENTIRSLMEDELR 931

Query: 573  HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
             AK  AE  +  K+ FLA  SH++  PL A   F+  +  Q      +    +  + ++ 
Sbjct: 932  QAKSDAEDANLGKTRFLASASHDLLQPLNAARLFTSALAQQSH----SEETRQLVDNLNG 987

Query: 633  SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
            S     +++  +LDISK+++G +       +LD+  +   +     A +K +  +     
Sbjct: 988  SLTAAEELITAILDISKLDAGALEPSITDFALDDMFTALSTEFTAVAEKKNLQFQFVQCK 1047

Query: 693  NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYE 752
             +  + +D + +++I  N LSNAI +T  G +I++      N  + + V DTGVG+   +
Sbjct: 1048 KV--VRSDQQLLRRIIQNFLSNAIRYTQEG-KILLGCRRRKN-MLRIEVWDTGVGIAEDK 1103

Query: 753  LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
            + +  + F +I N +  + +G GLGL + + +      K  + S P KGT+  +  PL D
Sbjct: 1104 ISEVFEEFRRIDNPKHSQVQGLGLGLAITERIARMLNHKLNVRSWPTKGTVFSVDIPLGD 1163

Query: 813  TS 814
             +
Sbjct: 1164 ET 1165



 Score = 45.8 bits (107), Expect = 0.034,   Method: Composition-based stats.
 Identities = 31/266 (11%), Positives = 78/266 (29%), Gaps = 8/266 (3%)

Query: 69   DSENTFVFDPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID 128
            +SE           V   + +D       I++   +T       + G     +      +
Sbjct: 768  ESEQNIRIYTDNVPVLIAY-LDPERRYLFINKAYAETFDLDRTSISGQACHKIMTEEEYE 826

Query: 129  -PNNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVN 187
              + +I   L+ +     +TTL   +G + +   ++  +P      +  G+  F +    
Sbjct: 827  LRSPYITAALEGKRQ-RFETTLPSKDGADRFA--EVKYIPHIGEYGDVLGY--FTLYQDI 881

Query: 188  RVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYY 247
                      K  ++        +    SV  ++    +         ++   S   +  
Sbjct: 882  TERRKAEKALKETNENLEQRVRERTHALSVVNKELRKENTIRSLMEDELRQAKSDAEDAN 941

Query: 248  AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
              K   L +  + LL    ++          + ++ T +Q    L  +   + E ++   
Sbjct: 942  LGKTRFLASASHDLLQPLNAARLFTSALAQQSHSEET-RQLVDNLNGSLTAAEELITAIL 1000

Query: 308  HPSLSAYFDEGENLTPETVDKCPIPF 333
              S         ++T   +D      
Sbjct: 1001 DISKLDAGALEPSITDFALDDMFTAL 1026


>gi|328874990|gb|EGG23355.1| hypothetical protein DFA_05487 [Dictyostelium fasciculatum]
          Length = 1097

 Score =  273 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 80/355 (22%), Positives = 148/355 (41%), Gaps = 27/355 (7%)

Query: 465 IAIINREGIILSTNRAV-SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
           I + +  G++   NR    +LF    + +        L   +   +++            
Sbjct: 459 IFLTDHRGVV---NRVFGEQLFECHAQILTGASIDSILLNASEDRLSNIF-------PSS 508

Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLP----FSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579
            ++K      +   L +  +  K +       S     + DI+E K  +  L  A+  A 
Sbjct: 509 EVKKEVTCKRRNGTLFTAEVYCKNIHMKKINFSGKLFFVRDITEEKNTQKVLLEARDRAL 568

Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639
           + ++ +S F+A +SHEIRTP+  +IG               P   +    + +S   +  
Sbjct: 569 EAANMRSQFMATISHEIRTPMNGLIGL----VELLLSSELQPAQKQIVESLYKSSEHLYS 624

Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL- 698
           I +D+LD +K+++ K NL          V   ++ +QL   +K I I +   ++IP I+ 
Sbjct: 625 ITSDILDFTKMQASKFNLEIINFDFKGCVEGVLNTLQLSL-KKPIEIISKIDSSIPTIVK 683

Query: 699 ADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEE---VILRVRDTGVGMTNYELE 754
            D   ++QI  NI  N+I +T  G  ++ +S   + +     +   V D+G+G+   +  
Sbjct: 684 GDPNRLRQIIYNICFNSIKYTDQGFIKVNVSLLSSPSASKKVIEFIVEDSGIGIEPSQQG 743

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY-IFSTPAKGTLIEIIF 808
              +PF Q+ NS      GTGLGL + K +V+   G    + S P  G+      
Sbjct: 744 TLFQPFVQLDNS-SRSHSGTGLGLSIVKKIVEMMNGDIRLVESKPGVGSKFSFTI 797


>gi|328957345|ref|YP_004374731.1| two-component sensor histidine kinase [Carnobacterium sp. 17-4]
 gi|328673669|gb|AEB29715.1| two-component sensor histidine kinase [Carnobacterium sp. 17-4]
          Length = 583

 Score =  273 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 77/373 (20%), Positives = 156/373 (41%), Gaps = 32/373 (8%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
                E   L +I+ + S G+   N++  +L +N       G      L +     ++  
Sbjct: 232 AATRQEKELLENIVTSISTGVLYYNQDKTLLMSNP-----LGDEYLQHLYRS-DQVMKTI 285

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564
            P V+ + +  ++    + + E           L+ L    + L       +++ DI++ 
Sbjct: 286 IPEVLEYRIDSVIKFPEKVSYENNIDDYYYNITLIPLFD--ENLESVRGVLVSIQDITKE 343

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           K+                  ++DF+  +SHE+RTPL  I G+SE I +            
Sbjct: 344 KRLDI--------------MRNDFINNISHELRTPLVMIQGYSEAILDDV--AETQEEKK 387

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           E A  I      +  +VN++LD S++E+G +NL    V LD+  ++  +     + +  I
Sbjct: 388 EMAKIIGEESIRMNRMVNEMLDSSRMEAGFINLIKLDVQLDDFFNKLFTRFATMSEKNNI 447

Query: 685 LIRTSFANNIPRILADLRSVKQIALNILSNAIHFT----PSGGQIIISTTHTS-NEEVIL 739
            ++ +   N+     D   + Q+ +N+++NAI  T        ++ I        +E+++
Sbjct: 448 EMKLTIDPNLDSYYMDEDKMNQVFVNLINNAIRHTSLSNKENKKVEIWVHLEKIMDEILI 507

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE---GTGLGLPLAKAMVDANMGKFYIFS 796
            VRD G G++  ++      F +   S+ +      GTG+GL + K +++A+ G   + S
Sbjct: 508 EVRDNGTGISEEDVPYVFDRFYKADKSRTVMKGNKTGTGIGLSIVKNIIEAHGGFVEVKS 567

Query: 797 TPAKGTLIEIIFP 809
              + T   +  P
Sbjct: 568 VINEHTTFVVHLP 580


>gi|312887251|ref|ZP_07746855.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM
           18603]
 gi|311300563|gb|EFQ77628.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM
           18603]
          Length = 1187

 Score =  273 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 84/320 (26%), Positives = 151/320 (47%), Gaps = 17/320 (5%)

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK- 568
              + E+L     Q+ E     S  E     L    +KL  S        +  +    + 
Sbjct: 431 RKRMQELLEETQAQSEELQAQHSELENLNTELEAHTQKLQTSEEELRVQQEELQQTNLEL 490

Query: 569 -----------NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
                       ++    +  E+ + +K++F+A +SHE+RTPL +I+  S  +       
Sbjct: 491 EERNRMINARNQEIQQKAEELEQSTRYKTEFMANMSHELRTPLNSILLLSRYLAENTEQN 550

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
           L NP  +E A+ I  SGN +L+++++LLD+SKIE+GKM L ++ VS++  +++  SL   
Sbjct: 551 L-NPDQVESASVILNSGNGLLNLIDELLDLSKIEAGKMELEYQQVSVEGVLNDIKSLFAP 609

Query: 678 YANEKRILIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS--N 734
            A EK++        + I ++  D   ++QI  N+LSNA+ FT  G Q+ ++        
Sbjct: 610 IAKEKKLDFIIKNELSEITQLETDRMRLEQILKNLLSNALKFTSKG-QVSLTLRQPELTG 668

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
             +   V DTG+G+   + +     F Q   S + +  GTGLGL +++ +     G+  +
Sbjct: 669 NLLQFAVTDTGIGIPQNKQQLVFDAFQQADGSTKRKFGGTGLGLSISRELARLLGGEISL 728

Query: 795 FSTPAKGTLIEIIFPLYDTS 814
            S P KG+   +  P+   +
Sbjct: 729 SSEPGKGSEFVLTIPMDRQA 748


>gi|310824799|ref|YP_003957157.1| Hybrid signal transduction histidine kinase J [Stigmatella aurantiaca
            DW4/3-1]
 gi|309397871|gb|ADO75330.1| Hybrid signal transduction histidine kinase J [Stigmatella aurantiaca
            DW4/3-1]
          Length = 2142

 Score =  273 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 77/262 (29%), Positives = 128/262 (48%), Gaps = 16/262 (6%)

Query: 563  EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
            E +Q K  L    +     S +KS+FLA +SHE+RTPL +++  S+ +     G L   R
Sbjct: 1425 EVEQAKRALEEKAEQLSLTSKYKSEFLANMSHELRTPLNSLLILSQTLSENTDGNLTG-R 1483

Query: 623  YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             +E+A  I  SG+ +L+++ND+LD+SKIESG M +   P+   +         +  A++K
Sbjct: 1484 QVEFARTIHASGSDLLELINDILDLSKIESGTMTVDVGPLRFGDLREFVERTFRQVADKK 1543

Query: 683  RILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----- 736
             +    S    +P  +  D + ++Q+  N+LSNA  FT SG Q+ +S             
Sbjct: 1544 SLQFDISLEGALPGEVQTDAKRLQQVLKNLLSNAFKFTESG-QVTLSIQRARAGWSSDHP 1602

Query: 737  --------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                    V   VRDTG+G+   + +   + F Q   S   +  GTGLGL +++ +    
Sbjct: 1603 ILRTAPTVVAFVVRDTGIGIPKDKHQIIFEAFQQADGSTARKYGGTGLGLSISREIARLL 1662

Query: 789  MGKFYIFSTPAKGTLIEIIFPL 810
             G+  + S   +G+   +  PL
Sbjct: 1663 GGEIRLESEVGRGSTFTLFLPL 1684


>gi|320353717|ref|YP_004195056.1| multi-sensor signal transduction histidine kinase [Desulfobulbus
           propionicus DSM 2032]
 gi|320122219|gb|ADW17765.1| multi-sensor signal transduction histidine kinase [Desulfobulbus
           propionicus DSM 2032]
          Length = 619

 Score =  273 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 92/555 (16%), Positives = 194/555 (34%), Gaps = 39/555 (7%)

Query: 276 HTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFD-EGENLTPETVDKCPIPFF 334
           H   +  +  +       +   E+ + ++H +H  + A       N      D  P    
Sbjct: 88  HVQRVIDHLAEDPDLRFLSLVNETGQVIAHSDHTRIGALEPVPESNRYRHPADDQPQLTH 147

Query: 335 VYSHGN--------LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
                         +   +PSF  L     +  +        L    +      + P  L
Sbjct: 148 SVRETREYGRVFETIRQFSPSFPALLPM-PLQPLREGLKGPFLHHPEERRPMMRLLPEGL 206

Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
              +R  +  +  +              F+              +    +    R++++ 
Sbjct: 207 PTGERYFVVVALDMKEFDRTLGRLRMQIFMLSLAMLLVGLGGWFSLSAVQGF--RVSQKT 264

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP 506
           +E        ++     G+   +  G I + N+ ++ + G        K     L +   
Sbjct: 265 LENIQAFTSLLVAKLPVGVIATDATGRITTWNQTIAHVTGIDKTAATGKHPEEILPEPLA 324

Query: 507 SVMNHYLTEILSLDLRQTLEKITLGSTKEE-KLLSLRIIIKKLPFSS----CYSLTMHDI 561
           +     L            EK TL       +   L      +  S        L + D+
Sbjct: 325 AFF---LPGGSGAAEPTATEKETLVRLAFGPRRCELLCHPLTISDSEHQYLGRVLLISDV 381

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           +E +  +      +    +  +        V+HE+R PL++I G +  +  +   PLG+ 
Sbjct: 382 TEIRSLEQ-----RMRENERLAAVGRMAGGVAHEVRNPLSSIKGLA--LLLKNKFPLGSK 434

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
              + A+ + +    +   + ++L  ++  +    LH   V L   +  ++ L++  A E
Sbjct: 435 EQ-DTADLLIQETERMNRTITEMLSFTRPSA----LHLGRVDLGALLGRSLELIRAEAEE 489

Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-VILR 740
             I    +   ++  +L D   ++Q+A+N+L NA+     GG++++S  +  N + V LR
Sbjct: 490 NGIRSVLNIGPDLCPVLGDADRLQQVAMNVLLNAMQAMEEGGELVVSLANRDNGQTVELR 549

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           + DTG G+    L +   P+         +  GTG+GL + + +V  + G   + S P K
Sbjct: 550 ISDTGAGIDPALLSQVFYPYFTT------KQGGTGIGLAICQKIVADHGGTIELESEPVK 603

Query: 801 GTLIEIIFPLYDTSH 815
           GT + +  P Y    
Sbjct: 604 GTTVIVTLPAYHPPQ 618



 Score = 38.9 bits (89), Expect = 3.5,   Method: Composition-based stats.
 Identities = 23/249 (9%), Positives = 58/249 (23%), Gaps = 14/249 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            DA G +   ++ +    G       G    ++     +      G     + T   K T
Sbjct: 286 TDATGRITTWNQTIAHVTGIDKTAATGKHPEEIL-PEPLAAFFLPGGSGAAEPTATEKET 344

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS--- 205
           L  +        +    L I     ++ G     ++             +  ++  +   
Sbjct: 345 LVRLAFGPRRCELLCHPLTISDSEHQYLGR--VLLISDVTEIRSLEQRMRENERLAAVGR 402

Query: 206 ---HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
               +    +   S  K    +   + P              +    + + +      +L
Sbjct: 403 MAGGVAHEVRNPLSSIKGLALLLKNKFPLGSKEQ-----DTADLLIQETERMNRTITEML 457

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
           +    S           L   + +      + N   S   +     P L       +   
Sbjct: 458 SFTRPSALHLGRVDLGALLGRSLELIRAEAEENGIRSVLNIGPDLCPVLGDADRLQQVAM 517

Query: 323 PETVDKCPI 331
              ++    
Sbjct: 518 NVLLNAMQA 526


>gi|237717539|ref|ZP_04548020.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
 gi|229453169|gb|EEO58960.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
          Length = 419

 Score =  273 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 85/384 (22%), Positives = 163/384 (42%), Gaps = 34/384 (8%)

Query: 448 EIEVMQLCSILEATSDGIAIINREGIILSTN---------------RAVSKLFGYPVEDI 492
           E E+ +L  +L+  +    +I+++ ++  TN               + V  L        
Sbjct: 34  ENELKKLALVLQNINAYFLLIDKDFVVCDTNYYSLNRLPIQVGGVTKRVGDLLHCRNAIA 93

Query: 493 ---LRKPFTVFLEQNTPSVMNHYLTEI----LSLDLRQTLEKITLGSTKEEKLLSLRIII 545
                +     L     S+   +  +     L   ++   E  T  +  +   +S+    
Sbjct: 94  AGECGQHEQCKLCCIRASIGKAFYKKASFKNLEASMKLLSEDETKVTLCD---VSVSGTY 150

Query: 546 KKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIG 605
             +       LT++D++E K  +  LS  ++ +      KS F+A +SHE+RTPL AI+G
Sbjct: 151 LNIHGEDYMVLTVYDVTELKNVQRLLSIEREHSISADKLKSAFIANMSHEVRTPLNAIVG 210

Query: 606 FSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLD 665
           FS ++               YA+ I  +   +L +VND+ D+S+IESG ++  +     +
Sbjct: 211 FSGLM----VSASSEEERKMYADVIAENNERLLRLVNDIFDLSQIESGTVDFVYTEFDAN 266

Query: 666 EAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI 725
           + + E   + +   N   + +          + ++   + Q+  N+L NA+ FT SG +I
Sbjct: 267 DLLRELEGIFKTKLNNSSVELVCEAHIQPIMMYSERERIIQVLSNLLHNAMKFTESG-EI 325

Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
            +  +    EEV   V DTG+G+   E +K    F ++        +GTGLGL L++ ++
Sbjct: 326 RLGCSLKGTEEVCFVVSDTGIGIPKEEQKKIFSRFIKLD----REMQGTGLGLTLSQTII 381

Query: 786 DANMGKFYIFSTPAKGTLIEIIFP 809
               G   + S   +G+    + P
Sbjct: 382 QNLGGNLELDSEINRGSTFSFVLP 405


>gi|82751086|ref|YP_416827.1| respiratory response protein B [Staphylococcus aureus RF122]
 gi|82656617|emb|CAI81041.1| staphylococcal respiratory response protein B [Staphylococcus
           aureus RF122]
          Length = 583

 Score =  273 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 61/375 (16%), Positives = 151/375 (40%), Gaps = 39/375 (10%)

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
            +   +   +        S++ +  +G+  IN    I+ +N+  + +             
Sbjct: 242 TEIEEHVDALSTSKNIRDSLINSMVEGVLGINESRQIILSNKMANDIMD----------- 290

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK---KLPFSSCY 554
              ++++  + +   + +       +  +          +   +        +    S  
Sbjct: 291 --NIDEDAKAFLLRQIEDTFKSKQTEMRDLEI-----NARFFVVTTSYIDKIEQGGKSGV 343

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
            +T+ D++                      K DF+A VSHE+RTP++ + G++E I +  
Sbjct: 344 VVTVRDMT--------------NEHNLDQMKKDFIANVSHELRTPISLLQGYTESIVDGI 389

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     E    +      +  +VN+LL+++++++  ++++ E   +   + +    
Sbjct: 390 VTE--PDEIKESLAIVLDESKRLNRLVNELLNVARMDAEGLSVNKEIQPIAALLDKMKIK 447

Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
            +  A++  + +  ++         D+  + Q+  N++ NA  +T  G +I I+     +
Sbjct: 448 YRQQADDLGLNMTFNYCKKRVWRY-DMDRMDQVLTNLIDNASRYTKPGDEIAITCAENES 506

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
           E++ L ++DTG G+    L++    F ++  ++    +GTGLGL + K +++ + G   +
Sbjct: 507 EDI-LYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQGTGLGLFICKMIIEEHGGSIDV 565

Query: 795 FSTPAKGTLIEIIFP 809
            S   KGT   I  P
Sbjct: 566 KSELGKGTTFIIKLP 580


>gi|108805767|ref|YP_645704.1| multi-sensor signal transduction histidine kinase [Rubrobacter
           xylanophilus DSM 9941]
 gi|108767010|gb|ABG05892.1| multi-sensor signal transduction histidine kinase [Rubrobacter
           xylanophilus DSM 9941]
          Length = 608

 Score =  273 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 100/640 (15%), Positives = 204/640 (31%), Gaps = 78/640 (12%)

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKY 259
           L +K +           +           +    +     V++         D L     
Sbjct: 8   LARKSAARLPWPSRPEGLRPRVGIRIWLTALFVLVTALAAVTAYELVRPILQDTLNR--- 64

Query: 260 PLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE 319
               SE S     E F         +          +    ++   R         + G 
Sbjct: 65  ---ASEASFRQVGEQFEAQLARNDGQVSVDQVKSFAASRGLQWGVVRAEDGTKLEGELGG 121

Query: 320 NLTPETVDKCPIPFFVYSH----GNLFYANPSFLLLT-KYKSVDDIEIAGGLSTLLDAPK 374
           NL   +                   +   NP    L   Y S   IE   G + +     
Sbjct: 122 NLDDWSARAVQRAVAEQRPQQAIERVAEGNPREGQLRATYASPIRIEGESGYAIVFVKFF 181

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
              +       L + DR  + A+A    +       +A                   G  
Sbjct: 182 TQSDIENVQAALAKIDRVAMIAAALALMVAGAVGYFVATLISRRISRLGLAAERLAAGNF 241

Query: 435 PEDVDTRINKR--------------------KMEIEVMQLCSILEATSDGIAIINREGII 474
            E + +R+                       ++E E  +  +IL+  +D +  ++RE   
Sbjct: 242 DERIRSRVEDEVGSLGETFNSMAASLKSAFEQVEQEKERGQAILDGMTDAVVGVDRELNP 301

Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
           +  N    +L                      + +   L +          E        
Sbjct: 302 VFLNPRARELL-------------ESAPPEFHNRLQEVLAKTRYSGPITEPEAE-----A 343

Query: 535 EEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
            E+++ +R               + D++E +Q +                K++F+A  SH
Sbjct: 344 GERIIEIRAAPL----EDGALAILRDVTEERQIQ--------------RAKAEFIANASH 385

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           E++TP++A+ G+ E++++++          E+   +      + ++   LLD+S++++  
Sbjct: 386 ELKTPISALSGYLEMLEDEQ----DEEVRAEFLREMRTQTERLQNLARTLLDLSRLDANA 441

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSN 714
           +    E V L++ + E               +R      +P +  D   + +    ++ N
Sbjct: 442 VIFRLEEVDLEDLLHELRRDFSYT----GRPLRIHAEEGVPPVETDPTQLHRTLAILVDN 497

Query: 715 AIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           AI ++P G  + ++        V++ VRD G G++  E+    + F +   S   R +GT
Sbjct: 498 AIKYSPEGTPVDLTLRREDGG-VVIDVRDRGCGISEAEIPHIFERFYRAQGS--SRADGT 554

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           GLGL LA  +V    G+  + S P  G+   ++ PL  + 
Sbjct: 555 GLGLALANEIVGHLGGEIRVQSEPGAGSTFSVVLPLKKSE 594


>gi|160938607|ref|ZP_02085959.1| hypothetical protein CLOBOL_03502 [Clostridium bolteae ATCC
           BAA-613]
 gi|158438306|gb|EDP16065.1| hypothetical protein CLOBOL_03502 [Clostridium bolteae ATCC
           BAA-613]
          Length = 738

 Score =  273 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 74/248 (29%), Positives = 124/248 (50%), Gaps = 8/248 (3%)

Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
           + +L  A   A+K    K +FL+ +SHEIRTPL+ IIG +  I         + R  +  
Sbjct: 212 EQELKDALNNAQKAFKVKKEFLSCMSHEIRTPLSIIIGMT-KIAATHLD--DSNRIEDCL 268

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
           + I  S   ++ I+ND+LD+SKIE GK++++ EP  L + +   ++ +   A E+ +   
Sbjct: 269 SKITFSSRHLMTIINDVLDMSKIEEGKLSVNHEPFQLQQLLEPLVATIYAQAEEQGLKFE 328

Query: 688 TSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIST----THTSNEEVILRVR 742
               N    +   D   + QI LN+LSN+I FTP GG + +             +    +
Sbjct: 329 CGIKNVPEAVYIGDCMRINQILLNLLSNSIKFTPKGGVVHLEVNPAPVVDGKTHLQFITK 388

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG+GM++  L++  KPF Q  +    +  GTGLG+ +   +V    G   + S   +GT
Sbjct: 389 DTGIGMSDEYLKRIFKPFEQADSGTSRKYGGTGLGMAITYNLVKLLGGSIQVESKLGEGT 448

Query: 803 LIEIIFPL 810
              ++ P+
Sbjct: 449 TCTVVLPV 456


>gi|158426278|ref|YP_001527570.1| sensor protein fixL [Azorhizobium caulinodans ORS 571]
 gi|120206|sp|P26489|FIXL_AZOC5 RecName: Full=Sensor protein fixL
 gi|38705|emb|CAA39979.1| fixL [Azorhizobium caulinodans ORS 571]
 gi|158333167|dbj|BAF90652.1| sensor protein fixL [Azorhizobium caulinodans ORS 571]
          Length = 504

 Score =  273 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 79/425 (18%), Positives = 169/425 (39%), Gaps = 24/425 (5%)

Query: 407 RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIA 466
                    +           +    +    +D     R +      L SIL+   D + 
Sbjct: 92  DTVVADWQSLGLLTIAGAGIAVLGERLRRTRLDAVARDRALLAREAHLSSILDTVPDAMI 151

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQT-- 524
           +I+  GI+ S +    +LFGY   +++ +  ++ +        + YL+  L+   R+   
Sbjct: 152 VIDERGIMQSFSITAERLFGYSPSEVIGRNVSMLMPNPHRDQHDLYLSRYLTTGERRIIG 211

Query: 525 LEKITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKNKLSHAKKIAEKES 582
           + ++  G  K+     + + + ++   S   ++  + D++E +  + +L   +      S
Sbjct: 212 IGRVVTGERKDGATFPMELAVGEMHSVSGRFFTGFIRDLTERQNTEARLQELQAELVHIS 271

Query: 583 S--HKSDFLARVSHEIRTPLTAIIGF---SEVIKNQRFGPLGNPRYIEYANYIDRSGNLV 637
                 +  + ++HE+  PL+AI  +   S  + +    P   P      +         
Sbjct: 272 RLTALGEMASTLAHELNQPLSAIANYIKGSRRLLDD-GDPKRIPMLQGALDKAAEQALRA 330

Query: 638 LDIVNDLLDI-SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR 696
             I+  L D  S+ E+          SL + + EA +L  + A E  I +R     +   
Sbjct: 331 GQIIRRLRDFVSRGET-----ERRVESLSKLIEEASALALVGAKEHGIQVRYQIDTSCDL 385

Query: 697 ILADLRSVKQIALNILSNAIHFTPSGG--QIIISTTHTSNEEVILRVRDTGVGMTNYELE 754
           +LAD   V+Q+ LN++ NA+         Q+++ TT   ++ V + V DTG G+++    
Sbjct: 386 VLADKVQVQQVLLNLMRNALEAMMDASRRQLLVQTTPAEDDMVTVSVCDTGHGISDEMRA 445

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           +   PF         + +G G+GL +++ +++A+ G+ +       GT+        D  
Sbjct: 446 QLFTPFVTT------KAQGMGVGLSISRTIIEAHGGRIWAEPNAGGGTIFRFTLRTVDEE 499

Query: 815 HPHDC 819
             +D 
Sbjct: 500 AMNDA 504



 Score = 48.1 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 24/231 (10%), Positives = 53/231 (22%), Gaps = 10/231 (4%)

Query: 225 FSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYT 284
            S   P   L +   V   +                 L        +       +L   T
Sbjct: 46  LSAFDPRILLVLLVIVVLASSGGLFAGLAATAVSALGLALRGLLSGDTVVADWQSLGLLT 105

Query: 285 KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIP-FFVYSHGNLFY 343
                  +           +     +L A     E      +D  P     +   G +  
Sbjct: 106 IAGAGIAVLGERLRRTRLDAVARDRALLA----REAHLSSILDTVPDAMIVIDERGIMQS 161

Query: 344 ANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTI 403
            + +   L  Y   + I     +S L+  P    ++      L   +R  I     +   
Sbjct: 162 FSITAERLFGYSPSEVIGRN--VSMLMPNPHRDQHDLYLSRYLTTGERRIIGIGRVVTGE 219

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
           + +                         G   +  + +  + +++    +L
Sbjct: 220 RKDGATFPM---ELAVGEMHSVSGRFFTGFIRDLTERQNTEARLQELQAEL 267



 Score = 45.8 bits (107), Expect = 0.034,   Method: Composition-based stats.
 Identities = 30/230 (13%), Positives = 63/230 (27%), Gaps = 20/230 (8%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G ++  S    +  G    ++IG  +  +    H D ++                 
Sbjct: 153 IDERGIMQSFSITAERLFGYSPSEVIGRNVSMLMPNPHRDQHDLYLSRYLTTGERRIIGI 212

Query: 149 LWPIEGT---NLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
              + G        P++LA   ++S +  F  F GF  +       +  A  + L  +  
Sbjct: 213 GRVVTGERKDGATFPMELAVGEMHSVSGRF--FTGF--IRDLTERQNTEARLQELQAELV 268

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
           H+  +         E     + +   P   + N +          D          L   
Sbjct: 269 HISRLTA-----LGEMASTLAHELNQPLSAIANYIKGSRRLLDDGDPKRIPMLQGALDKA 323

Query: 266 ESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYF 315
                       +   Q  ++      +  ++   E LS     + +   
Sbjct: 324 AE--------QALRAGQIIRRLRDFVSRGETERRVESLSKLIEEASALAL 365


>gi|21243758|ref|NP_643340.1| histidine kinase-response regulator hybrid protein [Xanthomonas
            axonopodis pv. citri str. 306]
 gi|21109346|gb|AAM37876.1| histidine kinase-response regulator hybrid protein [Xanthomonas
            axonopodis pv. citri str. 306]
          Length = 1191

 Score =  273 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 75/253 (29%), Positives = 134/253 (52%), Gaps = 8/253 (3%)

Query: 563  EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
              + +     H +++AE+ S  K+ FLA + HE+RTP+T ++G SE++         + R
Sbjct: 789  RMRAQWQLAQHKRELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLQTPL----DGR 844

Query: 623  YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
               YA+ I  +G  +L +VND LD+++IE+GK+ L +    L + V +A+ LV+  A +K
Sbjct: 845  QQGYASAIQLAGKHLLRLVNDALDLARIEAGKLPLDYRDFDLRQLVGQAVELVRPSAEQK 904

Query: 683  RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIIST-THTSNEEVIL 739
            ++       + +P  +  D   V+QI LN+L NA+ FT  G   + ++T +  + + + +
Sbjct: 905  QLAFHCELDDALPPALHGDASRVQQILLNLLFNAVKFTERGSVHLRVTTLSQHTRQGLRV 964

Query: 740  RVRDTGVGMTNYELEKAMKPFGQIPNSQQ-IRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
             VRDTG GM+  +  +  + F Q   +    R  G+GLGL + + +  A  G   + S  
Sbjct: 965  EVRDTGPGMSAEQRGRLFQRFEQAEGALTLARHGGSGLGLAICRELAAAMGGAVTVASEL 1024

Query: 799  AKGTLIEIIFPLY 811
             +G    +  PL+
Sbjct: 1025 GQGACFVVELPLH 1037


>gi|30020746|ref|NP_832377.1| sporulation kinase [Bacillus cereus ATCC 14579]
 gi|29896298|gb|AAP09578.1| Sporulation kinase [Bacillus cereus ATCC 14579]
          Length = 407

 Score =  273 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 75/380 (19%), Positives = 148/380 (38%), Gaps = 25/380 (6%)

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV 489
              +  +    +  + +++ +  +L  I +A  D   +   +G I+         F  P 
Sbjct: 29  YWAVGVDITHLKAIEEQLKQQTSELELIFKALPDLCFLTEDDGTIIDYKAGSPTKFYVPA 88

Query: 490 EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP 549
           E  + K F   L  +        + ++        +E           +         L 
Sbjct: 89  EAFMGKKFYEVLPTSVAQQFQEAINQVKEKGTNVIVEYPLTL---NGSIDFFEARCLPLL 145

Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEV 609
                 + + DI+E K+ +  L+ +  +A           A V+HE+R PLT I GF + 
Sbjct: 146 HDK-IMIIVRDITERKKTEELLNKSDTLA-----AIGQLAAGVAHEVRNPLTVIKGFIQ- 198

Query: 610 IKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVS 669
                   +       Y + +      +  I+ + L I+K +     ++ E  ++ +   
Sbjct: 199 -----LFQINKEDQERYFDLMLSEIERIEAILQEFLSIAKTD----EINTEKKNIYQIFK 249

Query: 670 EAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
             +SL+   A    I +     +    I      +KQ+ +NIL N+I   P+GG I I  
Sbjct: 250 NVVSLMNTKAIMTNIQVELFTGDKDIIIECSENQLKQVFINILQNSIEAMPNGGGISIHI 309

Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
              +++ VI+ V D G+G+    +++  +PF         + +GTG+GL L+  +++++ 
Sbjct: 310 KEINDDGVIIHVIDEGIGIPEERIKRLGEPFY------STKEKGTGIGLMLSYKIIESHQ 363

Query: 790 GKFYIFSTPAKGTLIEIIFP 809
           G   I S    GT + I  P
Sbjct: 364 GTISIRSEVGVGTTVTIYLP 383


>gi|313106625|ref|ZP_07792850.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           39016]
 gi|310879352|gb|EFQ37946.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           39016]
          Length = 651

 Score =  273 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 73/260 (28%), Positives = 123/260 (47%), Gaps = 11/260 (4%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E +Q   +L  A++ AE+ +  KSDFLA +SHE+RTP+  ++G  ++++           
Sbjct: 244 EQEQAIGQLISAREEAEQANRAKSDFLAMMSHELRTPMNGVLGMLQLLETTEQTR----E 299

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             EY      S   +L ++ND+LD S+IE G + L   P +L E V  +  + Q  A ++
Sbjct: 300 QAEYTALATESTEHLLKVINDILDFSRIERGALELECIPFNLLELVQGSALVFQHSAQQR 359

Query: 683 RILIRTSFANNI--PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----E 736
            + +       +    +  D   ++QI +N+L NA+ FT  G  I +S    + +     
Sbjct: 360 GLALELQIQAGLENIEVCGDPTRIRQILVNLLGNALKFTEEGA-IHLSLEWQALDHDVLW 418

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           +   V D+G+G++   LE     F Q  +S   R  GTGLGL +A+ + +   G     S
Sbjct: 419 LTCAVHDSGIGISPERLEHMFDAFQQADSSISRRYGGTGLGLAIARTLAERMGGTLQAES 478

Query: 797 TPAKGTLIEIIFPLYDTSHP 816
               G+   +  PL     P
Sbjct: 479 KEGSGSTFTLEIPLPFQQSP 498


>gi|282858517|ref|ZP_06267689.1| sensor histidine kinase/response regulator [Prevotella bivia
           JCVIHMP010]
 gi|282588702|gb|EFB93835.1| sensor histidine kinase/response regulator [Prevotella bivia
           JCVIHMP010]
          Length = 565

 Score =  273 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 81/365 (22%), Positives = 169/365 (46%), Gaps = 25/365 (6%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            ++      L +++ A +  I  +N++  IL  N A+S L   P + ++ +        N
Sbjct: 222 ARIIAAKQYLETVVRAINKPILGLNQQQEILFANTALSNLINLPEDKLVGQSALALSVNN 281

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564
              ++   +  +         EK  L    + K     +   KL       + ++D++++
Sbjct: 282 D--LLRRLVKGMPENGGS---EKEPLKIYADNKESYFEVHYLKLADEYGTVVMLNDVTKF 336

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           K              +  + K++F++ +SHE++TP++AI+   ++++++R G L + +  
Sbjct: 337 K--------------ELDNAKTNFISVISHELKTPISAILMSLQLLEDKRIGTLSDEQQ- 381

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           E A  I  + + +L I  +LL ++++ESG + L  +     E +  AI    + A     
Sbjct: 382 ELAKSIGDNSDRLLKITGELLKMTQVESGSLQLSPKVTKPIELIEYAIKATHVLAERFEC 441

Query: 685 LIRTSFANN-IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
            I   +    +P++  D   +  +  N+L NAIH++P  G+III    T N  + + VRD
Sbjct: 442 NIEVEYPTEKMPKLFVDSEKIAWVITNLLGNAIHYSPQHGRIIIGARQTEN-RIEIYVRD 500

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
            G G+     +   + + ++P +   + +G+GLGL ++K  V+A+ G   + S   KG+ 
Sbjct: 501 FGKGIDPRYHDTIFERYFRVPGT---KVQGSGLGLAISKDFVEAHGGNIRVESEIGKGSC 557

Query: 804 IEIIF 808
             +  
Sbjct: 558 FIVTL 562


>gi|56696820|ref|YP_167182.1| phosphate regulon sensor histidine kinase, putative [Ruegeria
           pomeroyi DSS-3]
 gi|56678557|gb|AAV95223.1| phosphate regulon sensor histidine kinase, putative [Ruegeria
           pomeroyi DSS-3]
          Length = 348

 Score =  273 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 67/351 (19%), Positives = 140/351 (39%), Gaps = 32/351 (9%)

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEK 527
           +++   I++ N     L G   + I+ + +   L       +   +   L         +
Sbjct: 20  VDQAERIIAANTEAQTLLG---QQIVGRHYATILR---QPQVIEAIERALRDKGSSR-SR 72

Query: 528 ITLGSTKEEKLLSLRIIIKKLPF---SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH 584
                  ++    +                 ++  D++                E+    
Sbjct: 73  HLANDGAQDTTFEVTCRYVNGIGAVAGGAVLVSFIDVT--------------PMEQAGQM 118

Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
           + DF+A VSHE+RTPLTAI+GF E ++              +   +++    +  +V DL
Sbjct: 119 RRDFVANVSHELRTPLTAIMGFIETLRG--PARNDPAAQDRFLGIMEQEAGRMNRLVGDL 176

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704
           L ++++ES +       V L   ++  ++ ++  A E  + +  +       +  D   +
Sbjct: 177 LSLNRVESEERVRPRGAVDLSGQIASTLNSLRPLAAEAGVELYFTGPETPVIVPGDEDQI 236

Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNE------EVILRVRDTGVGMTNYELEKAMK 758
           +Q+  N++ NAI +  SGG++ ++ +    +         ++V D G G+    L +  +
Sbjct: 237 RQVLTNLIENAIKYGGSGGEVRVTLSEAERDPAVRGPAARIQVSDKGAGIDAVHLPRLTE 296

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            F +  N +  +  GTGLGL + K +V  + G+  + ST   GT   +I P
Sbjct: 297 RFYRADNHRSRQKGGTGLGLAIVKHIVTRHRGRMRVESTLGSGTTFTVILP 347


>gi|308274435|emb|CBX31034.1| hypothetical protein N47_E45460 [uncultured Desulfobacterium sp.]
          Length = 492

 Score =  273 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 75/375 (20%), Positives = 156/375 (41%), Gaps = 18/375 (4%)

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL-RKPFTVFLE 502
           + K++     L +++ ++ DG+   + EG IL  N A +K+ GY ++D+L          
Sbjct: 120 EEKLKRSNAFLRNLILSSVDGVIAADMEGKILIFNDAAAKIGGYNIKDVLDNLNIREVYP 179

Query: 503 QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT---MH 559
            +    +   L         +     T    K  +++ + +    +        T    H
Sbjct: 180 GSGAKKVMRRLRSDECGGKGKLKSYKTEVLGKNGEIIPISLNASIVYEDEREVATIGFFH 239

Query: 560 DI--SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
           D+  +   +++ + +  + +  ++ +      A V+H++  PL++I  F++++  +    
Sbjct: 240 DMRDTIKMKKELEKAQIQILQSEKMASLGKLAAGVAHQLNNPLSSITLFTQLVLEEYN-- 297

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
                       I +      D V +LL+ ++    +         ++ A+S  + L + 
Sbjct: 298 -LEEGARNDLTRIFKEAQRCRDTVKELLEFAR----QTRHEMRSHDINTAISRTLFLFEN 352

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII-STTHTSNEE 736
                 I I    + ++P +  D++ +  + +NI+ NA       G++ I S  H   + 
Sbjct: 353 QTLFHNIKIEKDLSPSLPEVYGDIQQLNHVFMNIILNAADAMEGKGKLTIKSYRHPEKDI 412

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           V++ + DTG G+    L    +PF         +G+GTGLGL LA +++D + GK Y  S
Sbjct: 413 VVVEISDTGQGIPENILPHIFEPFFTTK----EQGKGTGLGLSLAYSILDNHKGKIYAKS 468

Query: 797 TPAKGTLIEIIFPLY 811
              KGT   I  P  
Sbjct: 469 VKDKGTTFVIELPAA 483


>gi|239831142|ref|ZP_04679471.1| Phosphate regulon sensor protein phoR [Ochrobactrum intermedium LMG
           3301]
 gi|239823409|gb|EEQ94977.1| Phosphate regulon sensor protein phoR [Ochrobactrum intermedium LMG
           3301]
          Length = 430

 Score =  273 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 65/363 (17%), Positives = 140/363 (38%), Gaps = 32/363 (8%)

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
            +L  +L   +D + + +  G +L TN A  + F         K  T    +     M+ 
Sbjct: 91  ERLADLL---TDPMVVFDHGGTVLFTNSAAIEAFQ------SLKTGTALYLRFRAPEMHA 141

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQEKN 569
            +  +++    +++          ++     +            + L   D SE ++   
Sbjct: 142 LIQGVIADGEARSI--EYFERVPIDRWFKAMVKALPGKDGRPELFVLLFRDQSETRRI-- 197

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANY 629
                          +SDF+A  SHE+RTPL ++ GF E ++              + + 
Sbjct: 198 ------------DRMRSDFIANASHELRTPLASLRGFIETLQG--PARNDAAARDRFLDI 243

Query: 630 IDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTS 689
           + +    +  +++DLL +S++E        E V +   ++     +   A    I I   
Sbjct: 244 MQKQAERMSRLIDDLLSLSRLEMRAHLTVNECVDMTSILNHVADTLAPLAAGLDINIERV 303

Query: 690 FANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE---EVILRVRDTGV 746
             ++   +      + Q+  N++ NA  +  +G ++I+      +    EV+  ++D G 
Sbjct: 304 LPDHPVMVTGARDELIQVFQNLVENACKYGQAGKRVIVKLDEDDSGSSPEVVASIQDFGP 363

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+    L +  + F +I        +GTGLGL + K ++  + G+  + S   +G+   +
Sbjct: 364 GIAAEHLPRLTERFYRIDVETSRAQKGTGLGLAIVKHILARHRGRLVVRSQLGEGSTFTV 423

Query: 807 IFP 809
             P
Sbjct: 424 RLP 426


>gi|167748593|ref|ZP_02420720.1| hypothetical protein ANACAC_03366 [Anaerostipes caccae DSM 14662]
 gi|167651907|gb|EDR96036.1| hypothetical protein ANACAC_03366 [Anaerostipes caccae DSM 14662]
          Length = 728

 Score =  273 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 94/408 (23%), Positives = 179/408 (43%), Gaps = 45/408 (11%)

Query: 440 TRINKRKMEIEVMQLCS---ILEATSDGIAII-----NR---------EGIILSTNRAV- 481
            R  +  ++    +  +   IL+A S G+ I+     ++         +  +L   R   
Sbjct: 170 QRQLEGSLKQSEQKADTAYEILDAISSGVVILKMPSYDKLIPVYGNIGQYRMLRIKRTAQ 229

Query: 482 -SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL-DLRQTLEKITLGSTKEEKLL 539
            +++      ++  + F        P  M     E  +  +    + K       +   +
Sbjct: 230 DARVPDTSEAELESQYFDDAFAGVHPDDMERVRKEYKAGYETEHFVVKKYRLLRGDGSYV 289

Query: 540 SLRIIIK---KLPFSSCYSLTMHDISEWKQEKNKLSHAKK-------IAEKESSHKSDFL 589
            +   ++     P    +  T  D++E  + + +LS A +         E+ S+ K+DFL
Sbjct: 290 WVNADLRLQESAPDYKLFYATYTDVTEEHELQEQLSKALEKQKIISSELEQASNAKTDFL 349

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
           +R+SH+IRTP+ AI+G +  +        G  +   Y + ++ SG  +L ++ND+LDISK
Sbjct: 350 SRMSHDIRTPMNAILGLA-SLARNELDHSG--KVRSYLDKLEASGQFLLGLLNDVLDISK 406

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN-NIPRILADLRSVKQIA 708
           IE   + L+ EP  +DE   +  SL+      K I             IL D   + QI 
Sbjct: 407 IERNVIELNPEPYGIDEFQQQVESLIIPQCRRKDIQFNFYKEEIRYSTILMDKLRMNQII 466

Query: 709 LNILSNAIHFTPSGGQIIISTT--HTSNEEVILR--VRDTGVGMTNYELEKAMKPFGQIP 764
           LN+L+N++ +TP GG+I +       +N  + ++  ++D G+GM+    E   +PF Q  
Sbjct: 467 LNLLNNSVKYTPGGGRIELHVRDLEENNGRIHIQLLIKDNGIGMSKEFQEHMYEPFSQ-- 524

Query: 765 NSQQIRGEG----TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
             ++    G    +GLGL + +++V+   GK  + S   +GT+  +  
Sbjct: 525 -ERRENAGGDIRNSGLGLAIVRSLVELMDGKIQVNSEVGQGTVFTVDL 571


>gi|149198158|ref|ZP_01875205.1| ATP-binding region, ATPase-like protein [Lentisphaera araneosa
           HTCC2155]
 gi|149138760|gb|EDM27166.1| ATP-binding region, ATPase-like protein [Lentisphaera araneosa
           HTCC2155]
          Length = 640

 Score =  273 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 75/271 (27%), Positives = 126/271 (46%), Gaps = 10/271 (3%)

Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
              I +   ++       +  E  +        + +AE  +  KS+FLA VSHEIRTP+ 
Sbjct: 230 EDTINRERHNAEQRAV--EAEEANKRAKVEFDQRLVAESANKMKSEFLANVSHEIRTPMN 287

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           AI+GFSE+++ +      + + +EY   I+ SG  +L ++ND+LD+SK+E+GK+ L +  
Sbjct: 288 AILGFSELLEKEDI----DKKSMEYVEAINSSGRSLLHLINDILDLSKVEAGKLELIYTK 343

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTP 720
           V L   V+E  S+      +K +         +P  +  D   ++QI  N++ NA+ FT 
Sbjct: 344 VDLRSLVNEFASVFSREFAKKNLDFLVEVDQVVPDLVSLDEVRIRQILFNLIGNAVKFTE 403

Query: 721 SG-GQIIISTTHTSNE--EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLG 777
            G  ++ I      N   ++   V DTGVG+      +    F Q          GTGLG
Sbjct: 404 EGYVKVAIKADLKRNGVVDLDFVVSDTGVGIGEEANRRIFGAFNQASAEISKEYGGTGLG 463

Query: 778 LPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           L + K +     G   + S   +G+   +  
Sbjct: 464 LSICKELSQLMGGSINLVSAKGEGSEFTVSL 494


>gi|148655457|ref|YP_001275662.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp.
           RS-1]
 gi|148567567|gb|ABQ89712.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp.
           RS-1]
          Length = 894

 Score =  273 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 129/724 (17%), Positives = 241/724 (33%), Gaps = 66/724 (9%)

Query: 130 NNHIGDLLKRQNTWYGKTTLWPIEGTNLYVPI--------------DLAALPIYSRNREF 175
           +  I D+L     +  +   W I   +    +                 A P+Y     F
Sbjct: 159 DQDIIDVLDAIKPFDPRKRSWYIAARDAGRTVWVDTYVDANTKKLTTTCAAPLYDERGAF 218

Query: 176 SGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR 235
            G  GF ++         +     +D        +      V      +  Q      + 
Sbjct: 219 IGVVGFDVL-----LETIQQDILSIDIPPGGSAFLINQRGDVLLHNNLLNRQGRWDQPIA 273

Query: 236 MKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNN 295
             N ++            +      ++            F  I    ++        +  
Sbjct: 274 TDNLLNDPNPQLRDAAARMTRADQGVVRMMLQDEEVYLAFAPIASAGWSVGIVIPVAEVT 333

Query: 296 SKESFEYLSHRNHPSL---SAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANP---SFL 349
                   +                  ++    V   P    +        A     +  
Sbjct: 334 GFVQQVSEAITRRQETLSGQIVAVIVLSVVVVAVLSMPAALILTRPLRELQAAAQRVAAG 393

Query: 350 LLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML-YRSDRTCIAASARLHTIQWNRE 408
            LT     +       +    +    +    I  + L  R        S R  TI   R+
Sbjct: 394 DLTYRVPEEGAPEIANVGRSFNTMTDALREKIGELELNLRQLAALNDMSNRFRTIASVRD 453

Query: 409 NSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL-EATSDGIAI 467
               +  IP         +     +  +     ++    E +  Q+  +L +A       
Sbjct: 454 Q---LDAIPRGVCECLDFDRAVLYLIEQRTLRPVSAWVGEGDADQVARLLADAAP---IS 507

Query: 468 INREGIILSTNRAVSK-LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
           ++ + +     R+    + G P +  L               +   L        R    
Sbjct: 508 LDSDSMAADVVRSGQAVIIGEPSDQALWGASVQAPLFGHEKRVIGLLAAAFDEPGRTP-- 565

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
                    + +    +    L  +  Y+     +++      +L  A   A++    K 
Sbjct: 566 ---TARDAAQLMTYAGMSGLALENTMLYADLERQVAQRT---AELRTALARAQEADRLKG 619

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
            FLA VSHE+RTPL AIIGFS V+ ++  GP+  P   E    I+R+G  +L +++DLLD
Sbjct: 620 QFLAAVSHELRTPLNAIIGFSTVMLDEIDGPVT-PLQREDLKIINRNGRFLLHLIDDLLD 678

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706
           +++IE+GK+ L   PV +   + E    VQ   + + I +  +    +P   AD   ++Q
Sbjct: 679 LARIEAGKIELELAPVDVRALIVEVTETVQGLLHNRPITLNLALPERLPYAYADAARIRQ 738

Query: 707 IALNILSNAIHFTPSG---------------------GQIIISTTHTSNEEVILRVRDTG 745
           + LN+LSNA+ FT  G                     G +I+      +  + + VRDTG
Sbjct: 739 VLLNLLSNAVKFTKRGSIDISARCVAAPDTQPGTKSAGAVIVRNGQRLHPYIAVSVRDTG 798

Query: 746 VGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIE 805
           VG+   +L +  + F Q+      R  G+GLGL +++ +++A+ G+ +  S P KG++  
Sbjct: 799 VGIAPEDLTRIFEAFHQVRAGD--RQHGSGLGLAISRRLIEAHGGRIWAESEPGKGSVFT 856

Query: 806 IIFP 809
            I P
Sbjct: 857 FILP 860


>gi|78047261|ref|YP_363436.1| sensory box histidine kinase/response regulator hybrid [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
 gi|325927392|ref|ZP_08188640.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas perforans
           91-118]
 gi|78035691|emb|CAJ23382.1| sensory box histidine kinase/response regulator hybrid [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
 gi|325542213|gb|EGD13707.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas perforans
           91-118]
          Length = 951

 Score =  273 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 105/765 (13%), Positives = 214/765 (27%), Gaps = 78/765 (10%)

Query: 99  SEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNT-WYGKTTLWPIEGTNL 157
           ++     +G    + +G  L  +           I      Q + +          G   
Sbjct: 63  NDAYTPILGPRQAQALGAPLRVLWADAWEAVREPIEAAFAGQASRFEEVPIGMNRYGVPE 122

Query: 158 YVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSV 217
                 +  PIY  +    G   F + +        +A      ++   L E      + 
Sbjct: 123 QTWWTFSFSPIYLDDGRVGGA--FCVTNEVTARKLAQARLADEHERLIRLFEQAPMFMAF 180

Query: 218 EKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS---EESSLPEQ-- 272
                      +P     + ++            D ++      L        +      
Sbjct: 181 LSGPQHRVEFANPCYSRLIGHRDVIGRPLAEALPDAVEQGHVRRLDEVYRSGRAFSANAL 240

Query: 273 ----EDFHTINLNQYTKKQYFGTLQNN----SKESFEYLSHRNHPSLSAYFDEGENLTPE 324
               +        +      +  +       S    + L   +  SL     E E    +
Sbjct: 241 PYNVQAVPGGPAERRLLDLVYQPIAGADGTISGIFVQGLDITDRISLERAVREAEVRNRQ 300

Query: 325 TVDKCPIPFFVYSH--GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIK 382
            +D       + +   G +   N     +  +  V+ +     L        +     + 
Sbjct: 301 ILDSVMDYAIIATDMHGRVTSWNEGARRILGWSEVEMLGQT--LQRTFTPEDVEQRQMLI 358

Query: 383 PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRI 442
                    + +        ++ + E   A          +  E +    +  +    R+
Sbjct: 359 EAAAALESGSGMDERWH---VRKSGERFWA-NGSLMVLREETGEAIGFVKVLRDRTAERL 414

Query: 443 NKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG---YPVEDILRKPFTV 499
               ++    +L +++ A+S  I   +             +L G             +  
Sbjct: 415 ASEALQKSERRLDALVRASSQSIFSASAHWR------EWRQLVGDGVLSDAVSATPDWQA 468

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLT 557
            +  +  + +   L +  +      +E   LG+  +     +R I           +  T
Sbjct: 469 MVHPDDRARLAQALAQATATKSGVDVEYRVLGTDGQVGWTLMRAIPLLDEREQIAEWFGT 528

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKS--------------------DFLARVSHEIR 597
             DI++ +  + +L    +  E+    +S                         ++H+  
Sbjct: 529 SADITDKRVAEEQLRQLTETLEERVRERSAALLLAEEKLRQSQKMEAVGQLTGGLAHDFN 588

Query: 598 TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
             LTAI    E +   R       R   Y      S      +   LL  S+    +  L
Sbjct: 589 NLLTAISVGLE-LLQTRIEQGKYDRLERYVEMAQSSAARATALTQRLLAFSR----RQTL 643

Query: 658 HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
               + ++E V     ++        I ++   A+   ++L D   ++   LN+  NA  
Sbjct: 644 APTALDVEELVRGMHDII-ARTLGPSIALQLRPADQAWQVLVDAPQLENALLNLCINARD 702

Query: 718 FTPSGGQIIIST-------------THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764
             P GGQ+ IS                   + V L V+DTG GMT   + K  +PF    
Sbjct: 703 AMPDGGQLTISLHNRALDAAAAQQLELPPGDYVCLSVQDTGTGMTAEVMAKVFEPFFTTK 762

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
                 G+GTGLGL +       + G   I S    GT + +  P
Sbjct: 763 P----IGQGTGLGLSMIYGFTRQSGGHVRIDSEVGVGTTMALYLP 803



 Score =  118 bits (297), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 42/417 (10%), Positives = 104/417 (24%), Gaps = 20/417 (4%)

Query: 193 PRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD 252
                  L      +    +    V  +    F   +  P L  +   +          D
Sbjct: 29  AAQWPSPLRNAVDLMLGSPESMYVVWGDALTFFYNDAYTPILGPRQAQALGAPLRVLWAD 88

Query: 253 VLKTEKYPLLTSEESSLPEQEDF-----HTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
             +  + P+  +        E+            Q      F  +  +           N
Sbjct: 89  AWEAVREPIEAAFAGQASRFEEVPIGMNRYGVPEQTWWTFSFSPIYLDDGRVGGAFCVTN 148

Query: 308 HPSLSAYFDEGEN----LTPETVDKCPI--PFFVYSHGNLFYANPSFLLLTKYKSVDDIE 361
             +                    ++ P+   F       + +ANP +  L  ++   D+ 
Sbjct: 149 EVTARKLAQARLADEHERLIRLFEQAPMFMAFLSGPQHRVEFANPCYSRLIGHR---DVI 205

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                  L DA +      +  V       +  A    +  +         +  +    A
Sbjct: 206 GRPLAEALPDAVEQGHVRRLDEVYRSGRAFSANALPYNVQAVPGGPAERRLLDLVYQPIA 265

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD-GIAIINREGIILSTNRA 480
                         +  D    +R +    ++   IL++  D  I   +  G + S N  
Sbjct: 266 GADGTISGIFVQGLDITDRISLERAVREAEVRNRQILDSVMDYAIIATDMHGRVTSWNEG 325

Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
             ++ G+   ++L +                 +    +L+    ++       K  +   
Sbjct: 326 ARRILGWSEVEMLGQTLQRTFTPEDVEQRQMLIEAAAALESGSGMD-ERWHVRKSGERFW 384

Query: 541 LRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
               +  L   +     +   + D +  +     L  +++  +      S  +   S
Sbjct: 385 ANGSLMVLREETGEAIGFVKVLRDRTAERLASEALQKSERRLDALVRASSQSIFSAS 441



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 39/386 (10%), Positives = 107/386 (27%), Gaps = 16/386 (4%)

Query: 79  IPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPN-NHIGDLL 137
               +   +       ++  +    + IG+    +IG  L +         +   + ++ 
Sbjct: 172 EQAPMFMAFLSGPQHRVEFANPCYSRLIGHR--DVIGRPLAEALPDAVEQGHVRRLDEVY 229

Query: 138 KRQNTWYGKTTLWPIE----GTNLYVPIDLAALPIYSRNREFSG--FRGFGIV-HVNRVD 190
           +    +      + ++    G      +DL   PI   +   SG   +G  I   ++   
Sbjct: 230 RSGRAFSANALPYNVQAVPGGPAERRLLDLVYQPIAGADGTISGIFVQGLDITDRISLER 289

Query: 191 NDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHK 250
               A  +      S +           +        +       ++    +L   +  +
Sbjct: 290 AVREAEVRNRQILDSVMDYAIIATDMHGRVTSWNEGARRILGWSEVEMLGQTLQRTFTPE 349

Query: 251 DDVLKTEKYPLLTSEESSLPEQEDFH-TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP 309
           D   +        + ES     E +H   +  ++        L+  + E+  ++      
Sbjct: 350 DVEQRQMLIEAAAALESGSGMDERWHVRKSGERFWANGSLMVLREETGEAIGFVKVLRDR 409

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL 369
           +      E    +   +D         S  ++F A+  +    +      +  A   +  
Sbjct: 410 TAERLASEALQKSERRLDALVRA----SSQSIFSASAHWREWRQLVGDGVLSDAVSATPD 465

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
             A    D+ A     L ++  T          +  + +    +        ++  +   
Sbjct: 466 WQAMVHPDDRARLAQALAQATATKSGVDVEYRVLGTDGQVGWTL-MRAIPLLDEREQIAE 524

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLC 455
             G   +  D R+ + ++      L 
Sbjct: 525 WFGTSADITDKRVAEEQLRQLTETLE 550



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/351 (10%), Positives = 97/351 (27%), Gaps = 9/351 (2%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            D HG +   +E   + +G    +M+G  L        ++    + +      +  G   
Sbjct: 313 TDMHGRVTSWNEGARRILGWSEVEMLGQTLQRTFTPEDVEQRQMLIEAAAALESGSGMDE 372

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLH 208
            W +  +      + + + +     E  GF    ++     +       ++ +++   L 
Sbjct: 373 RWHVRKSGERFWANGSLMVLREETGEAIGF--VKVLRDRTAERLASEALQKSERRLDALV 430

Query: 209 EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESS 268
                        +  + Q      L      +   +   H DD  +  +     +   S
Sbjct: 431 RASSQSIFSASAHWREWRQLVGDGVLSDAVSATPDWQAMVHPDDRARLAQALAQATATKS 490

Query: 269 LPEQE-DFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVD 327
             + E      +            L +  ++  E+       +     +E      ET++
Sbjct: 491 GVDVEYRVLGTDGQVGWTLMRAIPLLDEREQIAEWFGTSADITDKRVAEEQLRQLTETLE 550

Query: 328 KCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLY 387
           +            L  A        K ++V  +   GGL+   +    + +  ++ +   
Sbjct: 551 ER----VRERSAALLLAEEKLRQSQKMEAVGQL--TGGLAHDFNNLLTAISVGLELLQTR 604

Query: 388 RSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
                       +   Q +   + A+T      + +         +E    
Sbjct: 605 IEQGKYDRLERYVEMAQSSAARATALTQRLLAFSRRQTLAPTALDVEELVR 655


>gi|209964312|ref|YP_002297227.1| sensor histidine kinase, putative [Rhodospirillum centenum SW]
 gi|209957778|gb|ACI98414.1| sensor histidine kinase, putative [Rhodospirillum centenum SW]
          Length = 911

 Score =  273 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 68/258 (26%), Positives = 127/258 (49%), Gaps = 7/258 (2%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E ++    LS A     +    K DFL+ V+HE+RTPLT++   SE++ +     L   +
Sbjct: 651 ELERATEALSAANVRLMELDRMKDDFLSTVTHELRTPLTSVRALSEILYDTP--ELPEEQ 708

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             ++   I +    +  ++N +LD++KIE+G+++ H   + +     EA    +    +K
Sbjct: 709 RQKFLATIIKESERLTRLINQVLDMAKIEAGEIDWHIASLDIAALAREAADSTRQLFRDK 768

Query: 683 RILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTP-SGGQIIISTTHTSNEEVILR 740
            + +       N+P  L D   + Q+ +N+LSNA+ F P  GG++ +S     +  + + 
Sbjct: 769 GVALELDLPEGNLPPALGDSDRLIQVMVNLLSNAVKFAPAEGGRVRLSLRPAPHA-LEVA 827

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V D G G+     E   + F Q+ +++  + +GTGLGL + + +VD   G+ ++ STP  
Sbjct: 828 VDDNGPGIAPEYHEAVFEKFRQVGSAKTGKPQGTGLGLAICRRLVDGMGGRIWVESTPGA 887

Query: 801 GTLIEIIFP--LYDTSHP 816
           G       P  +   + P
Sbjct: 888 GATFRFRIPAAVRQAAAP 905


>gi|73749325|ref|YP_308564.1| sensor histidine kinase [Dehalococcoides sp. CBDB1]
 gi|73661041|emb|CAI83648.1| sensor histidine kinase [Dehalococcoides sp. CBDB1]
          Length = 392

 Score =  273 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 80/382 (20%), Positives = 162/382 (42%), Gaps = 24/382 (6%)

Query: 447 MEIEVMQLCSILEATSDGIAII---NREG--IILSTNRAVSKLFGYPVEDILRKPFTVFL 501
           ++ E ++   +    +D I +    N     II   N A  K FGY  E+++ K      
Sbjct: 20  LKKERLKYRELFNWANDAILLFKFSNTNDPIIITEANTAACKHFGYKYEELIGKTNLDID 79

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII--IKKLPFSSCYSLTMH 559
            Q T       ++ +++               K  + + + I   +  L   +     + 
Sbjct: 80  SQETALRGPEIVSNLVAKGHEVL---EIAHRNKNGESIPVEINHKLIYLGGDTMIISVIR 136

Query: 560 DISEWKQEKNKLSHAKKIAEKESS-------HKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
           DI+  K+ + +L  + +  ++           +  F   + HE++TPLT+++  SE++  
Sbjct: 137 DITIRKKNEQELKESLEREKQLRETLENEISQRITFTRALVHELKTPLTSMLATSELLSK 196

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
                L     + Y   +      +   +++LLDI++ E G + L  EP+++ E + +  
Sbjct: 197 N----LAEEPNLSYMKCLYAGIQDLNLRIDELLDIARGEVGLLRLECEPLNIYELLKDID 252

Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
            ++          +  S  N +P ++AD + +KQ+ LN+L NA  +TP GG I ++    
Sbjct: 253 EIMNPVFESNSQKLTISIQNPLPVVVADYKRLKQVILNLLDNAAKYTPWGGNISLTAGIN 312

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
            N  + + V+D G GM+  E+      + +          G G+GL L+K ++D + G+ 
Sbjct: 313 HNN-LEVEVKDNGKGMSPEEIGALFHLYSRSHKKGTPS--GLGIGLALSKMIIDLHEGEI 369

Query: 793 YIFSTPAKGTLIEIIFPLYDTS 814
            + S   +G+      PL   +
Sbjct: 370 TVKSKVGEGSAFTFSIPLRPKA 391



 Score = 42.7 bits (99), Expect = 0.29,   Method: Composition-based stats.
 Identities = 30/250 (12%), Positives = 67/250 (26%), Gaps = 14/250 (5%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTLWPIEG 154
           + E +    K  G    ++IG    D+           I   L  +     +       G
Sbjct: 52  ITEANTAACKHFGYKYEELIGKTNLDIDSQETALRGPEIVSNLVAKGHEVLEIAHRNKNG 111

Query: 155 TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGH 214
            +  +P+++    IY             ++    +        K   ++   L E  +  
Sbjct: 112 ES--IPVEINHKLIYLGGDTMI----ISVIRDITIRKKNEQELKESLEREKQLRETLENE 165

Query: 215 SSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQED 274
            S           +   P   M      L++  A + ++   +              Q+ 
Sbjct: 166 ISQRITFTRALVHELKTPLTSMLATSELLSKNLAEEPNLSYMKCLYA--------GIQDL 217

Query: 275 FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFF 334
              I+      +   G L+   +    Y   ++   +     E  +       + P+P  
Sbjct: 218 NLRIDELLDIARGEVGLLRLECEPLNIYELLKDIDEIMNPVFESNSQKLTISIQNPLPVV 277

Query: 335 VYSHGNLFYA 344
           V  +  L   
Sbjct: 278 VADYKRLKQV 287


>gi|326799562|ref|YP_004317381.1| signal transduction histidine kinase with CheB and CheR activity
            [Sphingobacterium sp. 21]
 gi|326550326|gb|ADZ78711.1| signal transduction histidine kinase with CheB and CheR activity
            [Sphingobacterium sp. 21]
          Length = 1350

 Score =  273 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 67/381 (17%), Positives = 161/381 (42%), Gaps = 20/381 (5%)

Query: 439  DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK--P 496
            +      ++ +   +   +  AT+D I   +    ++  +     +F Y  E+ L++   
Sbjct: 984  EVAKRTAELALSEERFRLVARATNDCIRDWDLVNNMVWYSDNFYSIFAYKSEESLKEINQ 1043

Query: 497  FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC--- 553
            +   +       +   L + ++    Q           +     +      L   S    
Sbjct: 1044 WFSKIHPEDVKAVRKDLLKAINQGAEQ-WSGEYRFHKGDGSYCHVFDRSFILNNESGMPF 1102

Query: 554  -YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
                ++ D+S  K+ +           + ++ K +F++  SHE++TP+T++    ++I  
Sbjct: 1103 RVISSLMDVSTLKEAE-------LATRELATKKDEFMSIASHELKTPITSMKASLQLIDR 1155

Query: 613  QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
                   N     + +  ++  + +  ++ +LLD++KI++GK+ L     +++E + + +
Sbjct: 1156 LAEKGGPNGMLKTFVSKANQQVDKITFLIENLLDVTKIQAGKIILQKSTFNINELIQDCV 1215

Query: 673  SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
              V+       I I  +       + AD   ++Q+ +N L+NAI ++P   ++ + T   
Sbjct: 1216 YEVKNM-GGHAIQIHGNID---VEVYADKNRIEQVLINFLTNAIKYSPKADKVDLFTERN 1271

Query: 733  SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
             + EV + V+D G+G+   +L+     F ++  S   +  G GLGL ++  ++  + G+ 
Sbjct: 1272 ES-EVKISVKDYGIGIPQEKLDLVFDRFFRVEES-SSQFSGLGLGLFISSDIIKRHQGQI 1329

Query: 793  YIFSTPAKGTLIEIIFPLYDT 813
               S+P +G+      P+  T
Sbjct: 1330 GAVSSPGEGSTFWFSLPIQQT 1350



 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/213 (10%), Positives = 61/213 (28%), Gaps = 8/213 (3%)

Query: 360 IEIAGGLSTLLDAPKLSDN-----NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMT 414
           +     LST        D         + +   R++             +    N   ++
Sbjct: 626 LREHEPLSTFTPRSDSPDEKRYIQELEEQLSETRNNLQLAIEGLETTNEELQSSNEELLS 685

Query: 415 FIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGII 474
                +++          +   + + ++  +++      L +  ++T  G   ++++  I
Sbjct: 686 SNEELQSSNEELQSLNEELHTLNTEHQLKIKELIELNDDLDNYFKSTEIGQVFLDKDLKI 745

Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
              N    +L      DI  +P            +   + +  S       EK       
Sbjct: 746 RKFNPQAMRLINLIEGDI-GRPIGHISNNLANDNLLEDIKKAQSDK--GFYEKEVQLQDG 802

Query: 535 EEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQE 567
              L+ +   +++        L+  DIS  +  
Sbjct: 803 RIYLMRIYPFVRRDKEIDGLVLSFIDISALENL 835


>gi|319654425|ref|ZP_08008512.1| hypothetical protein HMPREF1013_05132 [Bacillus sp. 2_A_57_CT2]
 gi|317393924|gb|EFV74675.1| hypothetical protein HMPREF1013_05132 [Bacillus sp. 2_A_57_CT2]
          Length = 465

 Score =  273 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 66/225 (29%), Positives = 116/225 (51%), Gaps = 5/225 (2%)

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
            ++DFLA +SHE+RTPLT I G+++++  +        +   Y N I    N + D++ D
Sbjct: 234 ERNDFLASISHELRTPLTYIKGYADIVHKRNLSIEDRDK---YLNIIHEEANRLSDLIKD 290

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703
           L D++K++     +   P+ L + + +          EK + +          I+AD   
Sbjct: 291 LFDLAKMDKNSFVIQKRPIDLTDFILKIEQKFSPAFQEKEMELDV-ICPKEAVIIADPTR 349

Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
           ++QI  N+L NAI ++P G + I+S  +   ++V ++VRD G G+   +L   +  F ++
Sbjct: 350 LEQIIFNLLDNAIKYSPPGAKTILSV-NNKKKDVYIKVRDNGKGIPEEDLPYILNRFYRV 408

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
             S+     GTGLGL + K +V A+ G   + S   KGT  E++F
Sbjct: 409 DKSRTRSLGGTGLGLAIVKELVLAHGGTVSVRSKEGKGTEFELVF 453


>gi|254785971|ref|YP_003073400.1| periplasmic sensor hybrid histidine kinase [Teredinibacter turnerae
           T7901]
 gi|237685403|gb|ACR12667.1| periplasmic sensor hybrid histidine kinase [Teredinibacter turnerae
           T7901]
          Length = 620

 Score =  273 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 83/252 (32%), Positives = 135/252 (53%), Gaps = 6/252 (2%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           IS+ K    +L+ AK+ AEK  S KS+FLA +SHE+RTPL ++IG++  +          
Sbjct: 362 ISDQKALNAELAIAKRHAEKALSIKSEFLANMSHELRTPLNSVIGYTVRLLKHVNS--DR 419

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
              ++    I+R+G  +L ++ND+LD+SKIE+ K++L   PV L+E   +A++ V   A 
Sbjct: 420 AIQLKALEAIERNGRHLLAMINDILDLSKIEAQKLDLSIRPVDLNELCEQAVTQVGPAAE 479

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-SNEEVIL 739
           EK + +     +    +  D   + QI LN+LSNAI +T  GG I I      S + V L
Sbjct: 480 EKNLELVF-IRSQTATVHTDFTRLSQILLNLLSNAIKYTNEGG-IKIELERDISEKYVSL 537

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE-GTGLGLPLAKAMVDANMGKFYIFSTP 798
           RV DTG+G+     ++    F Q  +S + +   G+GLGL +  ++      +  + S  
Sbjct: 538 RVIDTGIGIEPENQKRLFLRFEQFDDSSRFQVGKGSGLGLAIVASLSKLLGVRVSVASDV 597

Query: 799 AKGTLIEIIFPL 810
            KG+   +  P+
Sbjct: 598 GKGSTFSLRVPV 609


>gi|121535984|ref|ZP_01667777.1| integral membrane sensor signal transduction histidine kinase
           [Thermosinus carboxydivorans Nor1]
 gi|121305444|gb|EAX46393.1| integral membrane sensor signal transduction histidine kinase
           [Thermosinus carboxydivorans Nor1]
          Length = 583

 Score =  273 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 74/244 (30%), Positives = 125/244 (51%), Gaps = 5/244 (2%)

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEY 626
               +    +  E+    + DF+A VSHE+RTPLT + G+++ +++            +Y
Sbjct: 341 LAQDMEEYVRRLEQLDKMRRDFVANVSHELRTPLTIMHGYNQALQDGTI--TDPALVKKY 398

Query: 627 ANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILI 686
              +      +  ++ DLLD+S++++  + L  E VSL E V   ++L++  + EK + +
Sbjct: 399 HRVMGEEIMRLEKLIADLLDLSQLQANGLTLDIEEVSLAEIVDNVVTLLKPRSEEKGVSL 458

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
               A  +P I  D   + Q+AL ++ NA+ FTP GG+I I  T    EEV L V DTG 
Sbjct: 459 AACVAPGVPPIQGDGDRLTQLALILVDNALKFTPPGGRISIDLTVQDGEEV-LTVADTGT 517

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+   +L    + F +   S      GTGLGL +A+ +++ +  K  + S   +GT+  I
Sbjct: 518 GIAPEDLPYIWERFYKGDKS--RASSGTGLGLAIARQIIELHGAKVDVTSRCGEGTVFTI 575

Query: 807 IFPL 810
            FPL
Sbjct: 576 RFPL 579


>gi|120611753|ref|YP_971431.1| integral membrane sensor signal transduction histidine kinase
           [Acidovorax citrulli AAC00-1]
 gi|120590217|gb|ABM33657.1| integral membrane sensor signal transduction histidine kinase
           [Acidovorax citrulli AAC00-1]
          Length = 595

 Score =  273 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 73/261 (27%), Positives = 133/261 (50%), Gaps = 6/261 (2%)

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
             +  + + +Q+   L+ ++  A   +  KS+FL  +SHE+RTPLT+I GF+E+++ +  
Sbjct: 337 GFLRGLHQLEQKNLALAASEAQARSANRAKSEFLTAISHELRTPLTSIHGFAELMEQR-- 394

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
             L  P Y E A  I  +   +  +++++LD++K+++G M +     ++ E V   + L 
Sbjct: 395 --LEQPSYREAAGLIRSAAEHLNTLLSEILDLAKVQAGAMPIVPGDHAVRELVGTTVDLF 452

Query: 676 QLYANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
            + A +K + +    A  +P++   D   +KQI  N+LSNA+ FT  GG + + T     
Sbjct: 453 AISAVQKGLTLEMHIAPGVPQVLRCDGLRLKQILNNLLSNALKFTREGG-VRLETDTADG 511

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
             V  RV DTG G+     E   + F Q       +  GTGLGL L++ + +   G+  +
Sbjct: 512 HSVRFRVTDTGPGIPADLHEVIFEKFSQGSADVSTQHGGTGLGLALSRGLAELMGGRLTV 571

Query: 795 FSTPAKGTLIEIIFPLYDTSH 815
            S P +G    +  P++  + 
Sbjct: 572 ASEPGQGACFTLELPMHPPAA 592


>gi|229113506|ref|ZP_04242955.1| hypothetical protein bcere0018_56770 [Bacillus cereus Rock1-15]
 gi|228669924|gb|EEL25318.1| hypothetical protein bcere0018_56770 [Bacillus cereus Rock1-15]
          Length = 387

 Score =  273 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 58/226 (25%), Positives = 112/226 (49%), Gaps = 5/226 (2%)

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
             + +FLA V+HE+RTPLT I G++++I   +           Y + I    + V  +V 
Sbjct: 165 KERGEFLASVAHELRTPLTYIRGYADIILKTKMSTQD---QKHYLSIIKEEADHVTGLVQ 221

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702
           DL +++K+E     ++ +  +L + +   ++ +Q    EK I I  S   ++  +L D +
Sbjct: 222 DLFELAKMEKHNFIINTKQTNLYDLLKHIVAKIQPAYTEKNIHIIFSCPEDLVLLL-DEQ 280

Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
             +Q+ LN+L+NA   +    +I +  T    E + + V+D G G+   +L    + F +
Sbjct: 281 RFEQVILNLLNNAYSHSEVNSKIFVMVT-DKKESIQIIVKDEGEGIPEKDLPHIFERFYR 339

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           +  S+     G+GLGL + K +++ + G   + S    GT+  I+ 
Sbjct: 340 VDKSRTRATGGSGLGLAIVKEIIELHRGSISVKSELGHGTIFTILL 385


>gi|229125248|ref|ZP_04254354.1| hypothetical protein bcere0016_54890 [Bacillus cereus 95/8201]
 gi|228658208|gb|EEL13942.1| hypothetical protein bcere0016_54890 [Bacillus cereus 95/8201]
          Length = 387

 Score =  273 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 58/226 (25%), Positives = 112/226 (49%), Gaps = 5/226 (2%)

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
             + +FLA V+HE+RTPLT I G++++I   +           Y + I    + V  +V 
Sbjct: 165 KERGEFLASVAHELRTPLTYIRGYADIILKTKMSTQD---QKHYLSIIKEEADHVTGLVQ 221

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702
           DL +++K+E     ++ +  +L + +   ++ +Q    EK I I  S   ++  +L D +
Sbjct: 222 DLFELAKMEKHNFIINTKQTNLYDLLKHIVAKIQPAYTEKNIHIIFSCPEDLVLLL-DEQ 280

Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
             +Q+ LN+L+NA   +    +I +  T    E + + V+D G G+   +L    + F +
Sbjct: 281 RFEQVILNLLNNAYSHSEVNSKIFVMVT-DKKESIQIIVKDEGEGIPEKDLPHIFERFYR 339

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           +  S+     G+GLGL + K +++ + G   + S    GT+  I+ 
Sbjct: 340 VDKSRTRATGGSGLGLAIVKEIIELHRGSISVKSELGHGTIFTILL 385


>gi|44004552|ref|NP_982221.1| sensor histidine kinase [Bacillus cereus ATCC 10987]
 gi|190015080|ref|YP_001966749.1| sensor histidine kinase [Bacillus cereus]
 gi|190015346|ref|YP_001967073.1| sensor histidine kinase [Bacillus cereus]
 gi|218848250|ref|YP_002455135.1| sensor histidine kinase [Bacillus cereus AH820]
 gi|229164673|ref|ZP_04292537.1| hypothetical protein bcere0009_53880 [Bacillus cereus R309803]
 gi|296506625|ref|YP_003667859.1| sensor histidine kinase [Bacillus thuringiensis BMB171]
 gi|42741618|gb|AAS45063.1| sensor histidine kinase [Bacillus cereus ATCC 10987]
 gi|116584756|gb|ABK00871.1| sensor histidine kinase [Bacillus cereus]
 gi|116585027|gb|ABK01136.1| sensor histidine kinase [Bacillus cereus]
 gi|218540301|gb|ACK92697.1| sensor histidine kinase [Bacillus cereus AH820]
 gi|228618753|gb|EEK75715.1| hypothetical protein bcere0009_53880 [Bacillus cereus R309803]
 gi|296327212|gb|ADH10139.1| sensor histidine kinase [Bacillus thuringiensis BMB171]
          Length = 455

 Score =  273 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 58/226 (25%), Positives = 112/226 (49%), Gaps = 5/226 (2%)

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
             + +FLA V+HE+RTPLT I G++++I   +           Y + I    + V  +V 
Sbjct: 233 KERGEFLASVAHELRTPLTYIRGYADIILKTKMSTQD---QKHYLSIIKEEADHVTGLVQ 289

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702
           DL +++K+E     ++ +  +L + +   ++ +Q    EK I I  S   ++  +L D +
Sbjct: 290 DLFELAKMEKHNFIINTKQTNLYDLLKHIVAKIQPAYTEKNIHIIFSCPEDLVLLL-DEQ 348

Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
             +Q+ LN+L+NA   +    +I +  T    E + + V+D G G+   +L    + F +
Sbjct: 349 RFEQVILNLLNNAYSHSEVNSKIFVMVT-DKKESIQIIVKDEGEGIPEKDLPHIFERFYR 407

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           +  S+     G+GLGL + K +++ + G   + S    GT+  I+ 
Sbjct: 408 VDKSRTRATGGSGLGLAIVKEIIELHRGSISVKSELGHGTIFTILL 453


>gi|182418801|ref|ZP_02950068.1| sensory transduction histidine kinase [Clostridium butyricum 5521]
 gi|237668826|ref|ZP_04528810.1| multi-sensor signal transduction histidine kinase [Clostridium
           butyricum E4 str. BoNT E BL5262]
 gi|182377356|gb|EDT74916.1| sensory transduction histidine kinase [Clostridium butyricum 5521]
 gi|237657174|gb|EEP54730.1| multi-sensor signal transduction histidine kinase [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 615

 Score =  273 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 85/389 (21%), Positives = 171/389 (43%), Gaps = 14/389 (3%)

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPV-ED 491
           +E +    +  ++ +         + E + + + +  ++G IL  NR+   L GY   +D
Sbjct: 199 LEEKIKQRKEIQKILVNNETCYDILFENSINAVIVH-KDGKILYANRSAINLLGYDYIDD 257

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK--KLP 549
              K    F  +     +N    +I    + + +E+ T+      K++ +          
Sbjct: 258 FNVKTICEFYTEKQREYINSKYRKIEKEHMSKVIEEETIIDMF-GKVIPVSNTSSFFLYK 316

Query: 550 FSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS------DFLARVSHEIRTPLTAI 603
             S     + D++  K+ ++     +K  +  +  K        F   +SHE++TP+T +
Sbjct: 317 EESAILTVLTDVTNEKKIESLKLDMEKNIKILNETKEFNMLIRSFFINMSHELKTPITVM 376

Query: 604 IGFSE--VIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
               +   +  Q++      R  EY   + ++   ++ ++N+ +D +++E+G+M +  E 
Sbjct: 377 YSAIQAIDLNIQKYNSDSVERDREYIKNMKQNCLRMIRLINNFVDATRLEAGEMKISKEN 436

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
             + +AV   I     Y ++K I +          +  D   +K+I LN++SNAI F   
Sbjct: 437 ADIVDAVESIIQKTAQYIHDKSIELIFDTNVEEKLMAFDKEVMKRILLNLISNAIKFGDK 496

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
             +I I      +  V + V+D G G+   +L+   + FGQ+ NS     EG+G+GL L 
Sbjct: 497 KQKIQIDLNSVDD-YVFINVKDEGRGIPRNKLDVIFERFGQVDNSLSRECEGSGVGLYLV 555

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           K  V+ + GK  I S+  +GT + I  P+
Sbjct: 556 KCFVELHNGKIKIISSEGEGTEVIICLPV 584


>gi|220917914|ref|YP_002493218.1| PAS/PAC sensor signal transduction histidine kinase
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219955768|gb|ACL66152.1| PAS/PAC sensor signal transduction histidine kinase
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 412

 Score =  273 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 66/413 (15%), Positives = 157/413 (38%), Gaps = 36/413 (8%)

Query: 410 SLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEV--MQLCSILEATSDGIAI 467
              +         Q  +      +    +   I +  + +     ++ + +++  D + +
Sbjct: 20  FHLVPDPVLRGRAQTVKGAFFVVVTSALLLELIRRGDLGLRTLGAEVRATVDSMVDAVLL 79

Query: 468 INREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMN------HYLTEILSLDL 521
           ++ EG I+ TNRA  +L G   ++ L  P   +  +     ++           + +L  
Sbjct: 80  VDEEGRIVETNRAAVELLGVASKEDLLVPLRDWGRRFDLRYLDGTPVPYERYAAVRALSG 139

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS---LTMHDISEWKQEKNKLSHAKKIA 578
            +      +    +   +   +    +  +         + D++  ++            
Sbjct: 140 ERIKAYDAMARRADGADVYFSVSAAPVEGAGHRVLAVAVLRDVTAARRLDE--------- 190

Query: 579 EKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVL 638
                 + +FL+  +HE +TPL  +  ++++++ +  G  G          I R  + + 
Sbjct: 191 -----MREEFLSTAAHEFKTPLAVVKAYAQLMQKRAPGDPG-------LAVIQRQVDRLN 238

Query: 639 DIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRIL 698
            +V  LLD S++         +   +   V+EAI   +       +    + A     + 
Sbjct: 239 RLVQHLLDTSRLRLQGGEGRRDTFDVSSLVAEAIEEARPSTPGHALE---ADAPAPAVVH 295

Query: 699 ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMK 758
           AD   + ++  ++L NAI F+P+GG + +    T + EV++ V D G+G+      +  +
Sbjct: 296 ADRERILRVLTSLLDNAIRFSPAGGPVQVRVE-TLSGEVVVSVADHGLGIPPERQPRIFE 354

Query: 759 PFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
            + +          G GLGL +++ +V  + G+ +  S P +G+      PL 
Sbjct: 355 RYYRAHAGTDQDYGGLGLGLDMSREIVTRHGGRMWFESVPGQGSTFHFSLPLA 407



 Score = 49.3 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/247 (13%), Positives = 74/247 (29%), Gaps = 19/247 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID-------PNNHIG--DLLKR 139
           +D  G + E +    + +G  + + + + L D      +        P         L  
Sbjct: 80  VDEEGRIVETNRAAVELLGVASKEDLLVPLRDWGRRFDLRYLDGTPVPYERYAAVRALSG 139

Query: 140 QNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKR 199
           +            +G ++Y  +  +A P+     E +G R   +  V R     R L + 
Sbjct: 140 ERIKAYDAMARRADGADVYFSV--SAAPV-----EGAGHRVLAVA-VLRDVTAARRLDEM 191

Query: 200 LDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP--PPHLRMKNKVSSLTEYYAHKDDVLKTE 257
            ++  S      K   +V K    +  +++P  P    ++ +V  L     H  D  +  
Sbjct: 192 REEFLSTAAHEFKTPLAVVKAYAQLMQKRAPGDPGLAVIQRQVDRLNRLVQHLLDTSRLR 251

Query: 258 KYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
                   ++          I   + +   +       +         R    L++  D 
Sbjct: 252 LQGGEGRRDTFDVSSLVAEAIEEARPSTPGHALEADAPAPAVVHADRERILRVLTSLLDN 311

Query: 318 GENLTPE 324
               +P 
Sbjct: 312 AIRFSPA 318



 Score = 43.1 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 14/139 (10%), Positives = 30/139 (21%), Gaps = 7/139 (5%)

Query: 320 NLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIE-IAGGLSTLLDAPKLSD 377
                TVD        V   G +   N + + L    S +D+           D   L  
Sbjct: 64  AEVRATVDSMVDAVLLVDEEGRIVETNRAAVELLGVASKEDLLVPLRDWGRRFDLRYLDG 123

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPED 437
                         +     A     +      +  +             +    +  + 
Sbjct: 124 TPVPYERYAAVRALSGERIKAYDAMARRADGADVYFSVSAAPVE-GAGHRVLAVAVLRDV 182

Query: 438 VDTRINKRKMEIEVMQLCS 456
                  R+++    +  S
Sbjct: 183 T----AARRLDEMREEFLS 197


>gi|91215892|ref|ZP_01252861.1| Signal transduction histidine kinase [Psychroflexus torquis ATCC
           700755]
 gi|91185869|gb|EAS72243.1| Signal transduction histidine kinase [Psychroflexus torquis ATCC
           700755]
          Length = 502

 Score =  273 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 84/517 (16%), Positives = 196/517 (37%), Gaps = 34/517 (6%)

Query: 314 YFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
            F +G N+     +       + +    +   N S   +  Y+  + I     L  L+  
Sbjct: 3   AFKKGSNIFKILSEAVSEGIIIVNTSHIIVETNDSANQIFGYEKEELIGE--HLDILIPN 60

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
                ++      + +  +  +     L+  + +                   EN     
Sbjct: 61  QYRHGHDKHVAGFMEKGQKRQMGRGRDLYGSRKDGSEF---PVEAGLNPFSVYENNYVMA 117

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVED 491
           +  +    +  +++++          E+ ++ I I + +    L+ N+   K  GY +E+
Sbjct: 118 LVIDISVRKKAEQELQHWANIFN---ESLNE-IFIFDSKTLQFLNVNKGALKNIGYSLEE 173

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII--KKLP 549
           +              +     +  +L+  L + L+  T+   K+  +  + + +    L 
Sbjct: 174 LKTMTPLDIKPDFDRTQFIEKIKPLLNDSLDK-LKFYTIHKRKDGTIYPVEVHLQKSSLR 232

Query: 550 FSSCYSLTMHDISEW----KQEKNKLSHAKKIAEKES-------SHKSDFLARVSHEIRT 598
            +      + DI+E     ++ +  +       +K           K+ FL+ V+HE +T
Sbjct: 233 ENDMLVAIILDITEQEKYTQKLEETVDQRTHQLQKALTKEKELGELKTKFLSLVAHEFKT 292

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
           PL+ I+  +  +  +        +  ++   I      + +I+ND L I ++ESGK N  
Sbjct: 293 PLSGIMTSA-TLAGKYTREEQQSKREKHLKTIRGKVKYLNNIINDFLSIERLESGKFNYT 351

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA--DLRSVKQIALNILSNAI 716
           F    + + V+E I    +   E +      + ++I  I    D + ++ I  N+++NAI
Sbjct: 352 FSKFPISKVVNEVIYDANMLLKENQ---HIEYPDHIDSIYLNFDEKILELILTNLINNAI 408

Query: 717 HFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
            ++     + I      ++++   +RD G+G+   E +     + +  N+     +GTG+
Sbjct: 409 KYSSEDSTVYI-VAEEIDDKLAFSIRDEGIGIPEAEQKHIFNRYFRAENAL--LNQGTGI 465

Query: 777 GLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
           GL + K  ++   G     ST  +G++  +  PL  +
Sbjct: 466 GLNIVKTHLENLGGTITFTSTEGEGSVFNVKIPLKTS 502


>gi|313148670|ref|ZP_07810863.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313137437|gb|EFR54797.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 463

 Score =  273 bits (699), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 87/426 (20%), Positives = 162/426 (38%), Gaps = 21/426 (4%)

Query: 395 AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQL 454
              A    +  + +    +       + +  + +       E    ++ +R++     QL
Sbjct: 40  PYKAEERYVTADGKVHDTLVVKSIISSGKLGKWL--LVARWEITQLKMYERELLAAKEQL 97

Query: 455 C-------SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
                     L +   G+  I+R   +     +  K        I          +    
Sbjct: 98  EGAVRKQKLALRSIDFGLIYIDRNYKVQWEETSNIKNLVVGRHYIPGTTCYRTTGRGDKP 157

Query: 508 VMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQE 567
                  E +S                E     +              L   DI+E  + 
Sbjct: 158 CKRCAFQEAISTGKMVRHITHVDHVDFEITATPVYSDTG--GEIIGGLLRFEDITEKLKV 215

Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
              L  AK+ AE+ +  KS FLA +SHEIRTPL AIIGFS++I              EY 
Sbjct: 216 DRMLQEAKEKAEESNRLKSAFLANMSHEIRTPLNAIIGFSDLICQTD----DAEEKEEYI 271

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIR 687
             +  +  L+L +++D+LD+SKIE+G M+  +    ++E + +    +Q       + I 
Sbjct: 272 RIVTSNNELLLQLIDDILDLSKIEAGTMDFSYALTDINELMEDICLQMQQKNQRPGVQIL 331

Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-SNEEVILRVRDTGV 746
            +       I  D   + Q+ +N+++NA+ FT  G  I +         E+   V+DTG+
Sbjct: 332 FTEKEPCCVINTDRLRLSQVIINLMNNAMKFTAEGS-ITLGYRLNGQKNELYFFVKDTGI 390

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+   + EK  + F ++ +      +GTGLGL + + +++   G   + +   +G     
Sbjct: 391 GIPADKAEKVFERFVKLNSF----VKGTGLGLAICRVIIERLGGTIGVDTAVEEGACFWF 446

Query: 807 IFPLYD 812
             P+ +
Sbjct: 447 RLPVQE 452


>gi|148977089|ref|ZP_01813729.1| signal transduction histidine kinase [Vibrionales bacterium SWAT-3]
 gi|145963558|gb|EDK28820.1| signal transduction histidine kinase [Vibrionales bacterium SWAT-3]
          Length = 602

 Score =  273 bits (699), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 77/249 (30%), Positives = 125/249 (50%), Gaps = 6/249 (2%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E +++  +LS AK+ A+  +  K DFL+ VSHE+RTPL  I+G ++++     G   +  
Sbjct: 212 EMRKQYVQLSLAKESAQSANRAKDDFLSVVSHEMRTPLNGILGMAQIL-----GEGVDEA 266

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             E  + I  SG  +L I+ND+LDI+K+E GK+ L  EP SL+  V E  +       +K
Sbjct: 267 KKEQISIIVSSGEHLLLIINDILDIAKMEQGKLELRIEPFSLEALVQEVKNAFDNTCKQK 326

Query: 683 RILIRTSFAN-NIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
            +    +  +     +  D   +KQ+  N+L NA+ FT  G          S   + + +
Sbjct: 327 SLDYVVTTEHIEGTYLAGDNTRLKQVIFNLLGNAVKFTKKGAVTCHFQWLESESRLTITI 386

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            DTG+G+   +LE   KPF Q  +S      GTGLGL +   +++   GK  + S    G
Sbjct: 387 TDTGIGIPTDKLETIFKPFSQADSSTTRHFGGTGLGLAIVTQLLELMSGKIELVSEVNVG 446

Query: 802 TLIEIIFPL 810
           +   +  P+
Sbjct: 447 SQCTVTLPM 455


>gi|86160142|ref|YP_466927.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85776653|gb|ABC83490.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 592

 Score =  273 bits (699), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 95/588 (16%), Positives = 203/588 (34%), Gaps = 67/588 (11%)

Query: 279 NLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH 338
              +   ++    L + ++      +      L A  ++             +   +   
Sbjct: 5   PDRRRLLERLGALLDDAARRGPLPDAAALRDGLRALAEDQAVAEAVADSAGALVVVLDRE 64

Query: 339 GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASA 398
           G +   N +   +T +++ + +        LL   +          ML +          
Sbjct: 65  GRVLRWNRTCTRVTGWRAGEILGRPFW-DVLLLPEERDGIRRAFTRMLAKDFPNQQEVH- 122

Query: 399 RLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSIL 458
                +     +  + +      +   E         +  D    +  +  +  +L ++ 
Sbjct: 123 ----WRTRDGEARLIAWSNAALFDAAGEVERIVSTGIDVTDRTRAETALRRQARRLEALA 178

Query: 459 EATSDGIAIINREGIILSTNRAVSKLFG-------YPVEDILRKPFTVFLEQNTPSVMNH 511
           EA+    A ++ +  + +  R +S+L G          +     P  V+      + +  
Sbjct: 179 EASRVFAAGLDYKTTLDTVARRLSELIGDGALIRVVSEDGAWLVPVAVYHPSPERAALRR 238

Query: 512 YLTEILSLDLRQTLEKITLGSTK------------------------------------E 535
            +         + +    L S K                                    +
Sbjct: 239 RVLLASPQRTGEGITAGVLASGKPLRIPHLTREIIRNEMKPEYLPYLEGVSSLLIAPLEQ 298

Query: 536 EKLLSLRIIIKKLPFSSCYS----LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
            + +   I + +    + Y+      + D++    +  + +     A+   + + +FL+ 
Sbjct: 299 RRTVVGHITLMRDTGGAPYTSEDEALLEDLAHRAAQALENARLYGEAQAAVAARDEFLSI 358

Query: 592 VSHEIRTPLTAIIGFSEVIK----NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
            SHE+RTPLTA+    E ++     +    L            +R G  +  +V  LLD+
Sbjct: 359 ASHELRTPLTALRLALENMRRVASREALESLPAAYVERVLATAERQGQRLEKLVAALLDV 418

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA--DLRSVK 705
           S+I  G++ L  E V L  +V EA++ ++  A +    +  S A     +    D   + 
Sbjct: 419 SRIHMGRLELDLEEVDLGHSVGEAVAQLEDEAAQAGSQVTVSGAP----VHGRWDRLRIS 474

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
           Q+A N+LSNA+ +  +G  + +S          LRVRD G+G+   +  +  + F +  +
Sbjct: 475 QVATNLLSNAVKYG-AGKPVEVSYGARD-GRAFLRVRDHGIGIDAADQRQIFERFERAVS 532

Query: 766 SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
           S      G GLGL + K +V+A+ G   + S P +G   E+  PL   
Sbjct: 533 S--RNYGGLGLGLYIVKRIVEAHGGTVRVESAPGEGADFEVTLPLRPA 578



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/377 (10%), Positives = 95/377 (25%), Gaps = 22/377 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCD-VSDILHIDPNNHIGDLLKRQNTWYGKT 147
           +D  G +   +    +  G  A +++G    D +      D        +  ++    + 
Sbjct: 61  LDREGRVLRWNRTCTRVTGWRAGEILGRPFWDVLLLPEERDGIRRAFTRMLAKDFPNQQE 120

Query: 148 TLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHL 207
             W        + I  +   ++    E       GI              +R  ++   L
Sbjct: 121 VHWRTRDGEARL-IAWSNAALFDAAGEVERIVSTGI--DVTDRTRAETALRRQARRLEAL 177

Query: 208 HEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEES 267
            E  +  ++    K  +          R  +++             + +E    L     
Sbjct: 178 AEASRVFAAGLDYKTTL------DTVARRLSELIGDGALI-----RVVSEDGAWLVPVAV 226

Query: 268 SLPEQED-FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
             P  E       +   + ++    +      S + L   +        +      P   
Sbjct: 227 YHPSPERAALRRRVLLASPQRTGEGITAGVLASGKPLRIPHLTREIIRNEMKPEYLPYLE 286

Query: 327 DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
               +             + + +  T                LL+        A++   L
Sbjct: 287 GVSSLLIAPLEQRRTVVGHITLMRDTGGAPY-----TSEDEALLEDLAHRAAQALENARL 341

Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
           Y   +  +AA     +I  +   +         +  +   +       P     R+    
Sbjct: 342 YGEAQAAVAARDEFLSIASHELRTPLTALRLALENMRRVASREALESLPAAYVERV-LAT 400

Query: 447 MEIEVMQLCSILEATSD 463
            E +  +L  ++ A  D
Sbjct: 401 AERQGQRLEKLVAALLD 417


>gi|313683083|ref|YP_004060821.1| pas/pac sensor signal transduction histidine kinase [Sulfuricurvum
           kujiense DSM 16994]
 gi|313155943|gb|ADR34621.1| PAS/PAC sensor signal transduction histidine kinase [Sulfuricurvum
           kujiense DSM 16994]
          Length = 521

 Score =  273 bits (699), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 93/517 (17%), Positives = 177/517 (34%), Gaps = 41/517 (7%)

Query: 313 AYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
              D                  +     +  AN +F         D  +    LS     
Sbjct: 19  RESDPTYRYYKSIFHLTDNMIALSDGYRIVDANKAFSDFFAAIGSDVFDPDFRLSQQFLI 78

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
                      +      +T ++     + +  +  + +    +     +          
Sbjct: 79  IDKYGYVYEGYL-NAPWFKTVLSGEKEHYRVGISGRDQIYTFSVSVSLLDPSENI--YVI 135

Query: 433 IEPEDVDTRINKRKMEI-------EVMQLCSILEA------TSDGIAIINREGIILSTNR 479
              +  D    K  +E        E  +   IL        TS+ +A  N +GII   N 
Sbjct: 136 TLSDVTDMMSYKCVLEEGIRVSTHEKEETQYILSQYYEAIDTSNLVARCNLDGIITYVND 195

Query: 480 AVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLL 539
           A+ +   Y  E+++ +  ++F E N+  +      E +     +  + +     K     
Sbjct: 196 ALCEALDYMPEELVGQNVSIFFEGNSEVMCEKMAREKIYNG--EIWKGVLKNRDKFGGAH 253

Query: 540 SLRIIIKKLPFSS----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
                I  +  +           HDI++  +        K+ A +    K+ F  +VSHE
Sbjct: 254 YFATTIVPIKNADKTIIEILSIRHDITDMVKA-------KEEALQTLEAKTKFFDQVSHE 306

Query: 596 IRTPLTAIIGFSEVIKNQRFGPLGNPRYI----EYANYIDRSGNLVLDIVNDLLDISKIE 651
           +RTPL AI+ F++         + +        +Y      +   +L+++N LLDI+K++
Sbjct: 307 LRTPLNAIVNFTDQALESYDEIVEDEVSRVLVKKYLQRSYANAENLLELINSLLDIAKMK 366

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
           SGK        +      EA            I  R     ++  I  D    KQI  N+
Sbjct: 367 SGKTVFDIAEYNAVSLAREAFENCSSLHKNGSIDYRFKAEKSVIPIECDGVKFKQIITNL 426

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           +SNA+ FT +G  + I      ++  ++ V D+G+G+ + +L    +PF Q+        
Sbjct: 427 ISNALKFTTNGF-VEIRLE-EKSDSCVIEVEDSGIGIPSEKLSYVFEPFAQV-----RDH 479

Query: 772 E-GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
             GTGLGL + +   +       + S    G+   + 
Sbjct: 480 GFGTGLGLNIVREYAEMMKISLDVRSVEGTGSCFTLT 516


>gi|298375623|ref|ZP_06985580.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_19]
 gi|298268123|gb|EFI09779.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_19]
          Length = 364

 Score =  273 bits (699), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 95/346 (27%), Positives = 158/346 (45%), Gaps = 27/346 (7%)

Query: 481 VSKLFGYPVEDILRKPFTVFL------EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
             + +   + ++   P +  +      +      +   L+ ++        +        
Sbjct: 36  AMEQWYLNMGEVPGTPLSQIVGIYSNVKPEDRECLKTSLSRLV-HGETDHDQGEVRVKDG 94

Query: 535 EE-KLLSLRIIIKKLPFSSCYSLTMH-DISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
           E  K + L I+   L  SS   L M+ DISE K  + ++      AEK    KS FLA +
Sbjct: 95  EGWKWVRLDIMEAGLEKSSPILLLMNYDISELKAMEERML----KAEKSERLKSSFLANI 150

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHEIR PL AI+GFS ++ ++  G L      EY N I  +  L+L IVND+LD++K+ES
Sbjct: 151 SHEIRMPLNAIVGFSSLLGDEEDGEL----RQEYINLIQTNNELLLGIVNDVLDLAKLES 206

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712
           G M   F    L + + E ++  Q+      + +    + +   + +D   +KQ+  N +
Sbjct: 207 GTMTFDFMEFDLRQLIVETVASFQIKVPR-GVALTYPASLDSFLLRSDRIRLKQVLGNFI 265

Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           +NAI +T  G  II+S     N EV+L V DTG GM+          F +  N    + +
Sbjct: 266 TNAIKYTSIGS-IILSYQAMEN-EVLLSVTDTGEGMSEEIKLHVFDRFYKGRN----QKQ 319

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
           G GLGL + + +++   G+  + S   KG+      P++    P D
Sbjct: 320 GIGLGLSICQNIIERLGGRIGVSSEQGKGSCFWCTLPIFP---PKD 362


>gi|224539076|ref|ZP_03679615.1| hypothetical protein BACCELL_03976 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519321|gb|EEF88426.1| hypothetical protein BACCELL_03976 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 435

 Score =  273 bits (699), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 88/322 (27%), Positives = 145/322 (45%), Gaps = 17/322 (5%)

Query: 500 FLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII-IKKLPFSSCYSLTM 558
            +       +   +  +      + +++  L    +  L    I  I            +
Sbjct: 113 HVLPEYRKRIYEAIDGL-EKGCSKLIDEEFLYQNADNTLSWRNIYGIIYEYDEGGKPAIL 171

Query: 559 ----HDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
                 I E K+ ++ L  AK  AE+ +  K+ FLA +SHEIRTPL AI+GFS ++ +  
Sbjct: 172 IGGTQIIDERKKLESDLRKAKDKAEEANRLKTAFLANMSHEIRTPLNAIVGFSSILADTE 231

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     E+ N I+ +  L+L IV+D+LDISKIE+G ++LH     L + + E+ + 
Sbjct: 232 ----DIAEKKEFCNLINHNNALLLKIVDDILDISKIEAGYIDLHPTWFCLSDLIMESATE 287

Query: 675 VQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSN 734
            ++ A   R+ IR            D + VKQI  N LSNA+  T  G  I I+   T  
Sbjct: 288 YRMKAAG-RLDIRIHKPGQGYMAELDTKRVKQILNNFLSNALKHTQEG-YIDITYGVTEQ 345

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
             + ++V DTG G+   +L    + F ++ +      +G GLGLP+ K++ +   G   +
Sbjct: 346 G-IEIKVTDTGCGIPQDKLPVIFERFEKVDSFT----QGVGLGLPICKSIAECMGGSIGL 400

Query: 795 FSTPAKGTLIEIIFPLYDTSHP 816
            S    GT + +  P      P
Sbjct: 401 TSEAGVGTTVWVTLPCSTAPTP 422


>gi|53711829|ref|YP_097821.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
 gi|52214694|dbj|BAD47287.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
          Length = 411

 Score =  273 bits (699), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 90/377 (23%), Positives = 158/377 (41%), Gaps = 33/377 (8%)

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ------------ 503
           +IL + +    +IN + +++ TN     L G   E          L              
Sbjct: 44  TILRSMNACFILINSDLVVIRTN--YYDLSGILEEPASSGRVGDLLNCKNAVRSGGGCGA 101

Query: 504 ---NTPSVMNHYLTEILSLDLR-QTLEKITLGSTKEEK-----LLSLRIIIKKLPFSSCY 554
                  ++ H +            LE      + + +      +S+             
Sbjct: 102 HKNCENCMIRHTIENAFCHKKGFHKLEASMRLLSSDHQQIIPCDVSVSGTYLNNEGHEQM 161

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
            LT++DI+E K  +  L+  K+ A      KS F+A +SHEIRTPL AI+GFS ++    
Sbjct: 162 LLTVYDITELKNMQRLLNIEKENAVSAEKLKSAFIANMSHEIRTPLNAIVGFSGLLA--- 218

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                +     Y + +  + + +L IV D+LD+SKIESG ++ H+    +++ +     +
Sbjct: 219 -SADDDTEKKMYLDIVAENNDRLLQIVTDVLDLSKIESGSLDFHYSEFDVNDLLCGLHGI 277

Query: 675 VQLYANEK-RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
           + +   +K  I +      +   I ++   + QI  N++ NA+ FT SG +I        
Sbjct: 278 LNIRLKDKPEIKLNCEAGTDEWIIYSEQHRIVQIITNLVHNAMKFTHSG-EICFGCRPQG 336

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
            +E+   V DTG+G+   E +K    F ++         GTGLGL L++ +V    G+  
Sbjct: 337 EDEIYFYVSDTGIGIPAGEQDKIFDRFTKLD----HEVPGTGLGLTLSQTIVQNLGGEMG 392

Query: 794 IFSTPAKGTLIEIIFPL 810
           + S   KG+      PL
Sbjct: 393 VESEVTKGSTFWFTLPL 409


>gi|225390145|ref|ZP_03759869.1| hypothetical protein CLOSTASPAR_03895 [Clostridium asparagiforme
           DSM 15981]
 gi|225043798|gb|EEG54044.1| hypothetical protein CLOSTASPAR_03895 [Clostridium asparagiforme
           DSM 15981]
          Length = 852

 Score =  273 bits (699), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 81/261 (31%), Positives = 134/261 (51%), Gaps = 10/261 (3%)

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
            + +   S  + + ++L  A++ A + +  KS+FLA +SH+IRTP+ AI+G + +     
Sbjct: 315 LIFLRYFSITRSQLHELEKARQAALEANKAKSEFLANMSHDIRTPMNAIVGMTAIATAHI 374

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                  +       I  S   +L ++ND+LD+SKIESGK+ L  E +SL E +   +S+
Sbjct: 375 D---DRKQVQNCLRKITLSSKHLLGLINDVLDLSKIESGKLTLTIEQISLKEVIEGIVSI 431

Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
           +Q     K+        N +   +  D   + QI LN+LSNA  +TP GG I +S +   
Sbjct: 432 MQPQVKAKKQNFDIHVENILTENVWCDGVRLNQILLNLLSNATKYTPEGGSIQLSLSEEK 491

Query: 734 ----NEEVILR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
                  V +   V+D G+GM+   L+K  + + +   ++  + EG GLG+ + K +VDA
Sbjct: 492 SPKGENYVRISIKVKDNGIGMSPDFLKKIYESYSRADGTRVHKTEGAGLGMAITKYIVDA 551

Query: 788 NMGKFYIFSTPAKGTLIEIIF 808
             G   I S P KGT   ++F
Sbjct: 552 MEGTIDIQSEPDKGTEFFLMF 572


>gi|121998683|ref|YP_001003470.1| integral membrane sensor signal transduction histidine kinase
           [Halorhodospira halophila SL1]
 gi|121590088|gb|ABM62668.1| integral membrane sensor signal transduction histidine kinase
           [Halorhodospira halophila SL1]
          Length = 932

 Score =  273 bits (699), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 102/484 (21%), Positives = 184/484 (38%), Gaps = 25/484 (5%)

Query: 337 SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA 396
             G L      FLL      +  +  AG L   L          + P  L+  +     A
Sbjct: 447 RRGALAGLVAGFLLWAYTLLLPSLAEAGLLGERLLTDGPWGIEWLHPYGLFGMEGMDPIA 506

Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
            A   T+  N    L ++    +   +  +      +     +      +    V  L  
Sbjct: 507 HAFFWTLLANLGLLLGVSLFDRQGDMERIQATLFVDVFL-RSERDARFWEGTATVGDLQD 565

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           +L             G  L   RA   +  Y       +P      +     + + +  +
Sbjct: 566 LL-------------GRFLGPERAAGVIREYGAH--RGRPLDE--AEQAQPELVNQVERL 608

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE----WKQEKNKLS 572
           L+  +     ++ + S  + + LS   +++ L  +S        + E     +    +L 
Sbjct: 609 LAGSIGSASARVMVASIVKGEALSYEGVMEILDATSRAIEYSRRLEEKSHALESATEELR 668

Query: 573 HAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDR 632
            A +  ++    K +F++ VSHE+RTPLT+I  F E++ N     +   +  E+   + R
Sbjct: 669 AANERLKELDQLKDEFVSMVSHELRTPLTSIRAFGEILLNNP--EMDADQRREFLEVVVR 726

Query: 633 SGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN 692
               +  ++N +LD+SKIESG      E V L     EA    Q    +++  +    A+
Sbjct: 727 ESERLTRLINQVLDLSKIESGSAQWQLEDVDLSRLAREAAESTQQLFTDRQTQLHIEIAS 786

Query: 693 NIPRILADLRSVKQIALNILSNAIHFTPSG-GQIIISTTHTSNEEVILRVRDTGVGMTNY 751
           +   I  D   + Q+ +N+LSNA  FT  G GQ+ +       + + L V D G G++  
Sbjct: 787 DDNAIKGDPDRLMQLIINLLSNAAKFTEPGEGQVWLRLEKGRGDTLRLSVTDNGPGISAE 846

Query: 752 ELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
           +  +    F QI   Q  + +G+GLGL + + + DA+ G  ++ S P  G       P  
Sbjct: 847 DQRRIFDKFHQISQQQAGKPKGSGLGLAICRLIADAHWGTLWVDSEPGAGASFVCKLPRA 906

Query: 812 DTSH 815
              H
Sbjct: 907 GGEH 910


>gi|323694521|ref|ZP_08108689.1| hypothetical protein HMPREF9475_03553 [Clostridium symbiosum
            WAL-14673]
 gi|323501435|gb|EGB17329.1| hypothetical protein HMPREF9475_03553 [Clostridium symbiosum
            WAL-14673]
          Length = 1312

 Score =  273 bits (699), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 111/758 (14%), Positives = 226/758 (29%), Gaps = 70/758 (9%)

Query: 102  LPKTIGNYAFKMIG-----MRLCDVS------DILHIDPNNHIGDLLKRQNTWYGKTTLW 150
                 G     + G         +                      +   +     +   
Sbjct: 428  HTAYSGQKVQSLFGLGKIVDNFPETWLRMGYIHEEDQKTYRKAFADIDNGSLQEEFSARA 487

Query: 151  PIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEI 210
             I G++ ++ ++     I          R            +       + ++       
Sbjct: 488  KIPGSDRWIWMNFRCNVICDDTGR--AIRTICTAENIDRYKELEQTFFEVMRQNGVTSWK 545

Query: 211  KKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLP 270
                     E   + S      H +++  +     ++       +     +   E     
Sbjct: 546  YDIKRQAVLEGNKVVSAYGLHAH-QIQEGLIEGKLFHPEDAPKARLLLQHIREGEREVSG 604

Query: 271  EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET----- 325
                F          +  +  L +        L      S      +             
Sbjct: 605  IFRVFDKKAGEYSWIRLSYTVLVDADGIRRTALGSAMDISREIQHRQKFEEMLLLHKNKK 664

Query: 326  -VDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPV 384
             +D     +       +   N         +            T      + +    + +
Sbjct: 665  NLDTLLTGYCSLKENIIKGLNDFSGQDFGQRYGSV---RDEFFTRFADAIVDEKERSQFL 721

Query: 385  MLYRSDRTCIAA--------SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
              Y +               +      +   E       +    A    + +       +
Sbjct: 722  DTYLAKPLLADFAKGISNHSNIYYCKFRDEDEGLYVQVNVDTMLAPDKNDVIGFL-TVSD 780

Query: 437  DVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRK 495
                 I ++ +         ++E   D IA+I+   G I      +    G        +
Sbjct: 781  MSQQVIAEKIINR-------VVEQEFDFIALIDIASGNI----DRIIDRMGEYDHPARGE 829

Query: 496  PFTV--------FLEQNTPSV------MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
             + +        ++ +           +   L  +             +     ++   L
Sbjct: 830  NYDMRVGNGLLTYVVEEEREACSNTNTIQGILKGLGEAGNDYQTAYSIVNPKTGKRERKL 889

Query: 542  RIIIKKLPFSSCYSLTMHDISE--WKQEKNK--LSHAKKIAEKESSHKSDFLARVSHEIR 597
                          LT  D++    K+++ +  LS A + A+  +  KSDFLA +SH+IR
Sbjct: 890  WTFSYFDDTKKKVILTRTDMTATYLKEQEQQRNLSEALEFAKAANKAKSDFLAAMSHDIR 949

Query: 598  TPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNL 657
            TP+ AIIG +E+  +         +  E    I  S   ++ I+ND+LDIS+IESGK  +
Sbjct: 950  TPMNAIIGMTELALSDLS---DREQIHESFTTIKSSSAHLISIINDILDISRIESGKAEM 1006

Query: 658  HFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
              E  S  E   + +  +   A  K ++   S        + D+  + ++  N+LSNAI 
Sbjct: 1007 LQEQFSSREEHQKIVKRIAPLAEAKGLVFTHSLDIRHDCCIGDVARLNRVVDNLLSNAIK 1066

Query: 718  FTPSGGQI-----IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
            FTP GG++      +      +    + V DTG+GM  +      +PF +  +S     E
Sbjct: 1067 FTPEGGRVDYSFAELPCCRPDHILCRITVTDTGIGMDEHTRACLFEPFFRHLDSAAGNVE 1126

Query: 773  GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            GTGLG+ + K+ V+ + G   + S P +G+   +  P+
Sbjct: 1127 GTGLGMSIVKSTVELSGGSIEVESEPGRGSKFIVKIPI 1164



 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/282 (7%), Positives = 69/282 (24%), Gaps = 26/282 (9%)

Query: 319 ENLTPETVDKCPIPFFVYSHGNL---FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
           E      +D  P    VY   ++    Y +     LT Y   ++        T       
Sbjct: 138 ETKLQNVIDAIPGGVAVYRVSDIFDMQYFSKGVPELTGYTP-EEYRRVIKDETSAMPSSE 196

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
               A++ +              R++       + + +         +    +       
Sbjct: 197 DTQMAMRKLRYAAEHNASADFEFRMY---HRSGDRVWVRIQAKVIGYEDGYPLLHCVYHN 253

Query: 436 EDVDTRINKRKM---EIEVMQLCS----ILEATSDGIAIINREGI----ILSTNRAVSKL 484
                +  + ++     E  +L +     +  +  G+  I   G      +  ++    +
Sbjct: 254 -ITARKKAELELLKARQENDRLLAEYSDSVNNSPGGLVTIEITGAGMPFPIFVSQGFLNI 312

Query: 485 FGYPVEDILRKPFTVFL---EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
                E   +            +    +      +     +       +    +   + +
Sbjct: 313 TRMTREQFYQVYVDSAFDGLHPDDIQRVIAAYRRLQKPGDQMGDTFRLVC--GDGTYVWV 370

Query: 542 RIIIKKLPFSSCYSLTM--HDISEWKQEKNKLSHAKKIAEKE 581
           +             + +   D ++  + + K    ++  E+ 
Sbjct: 371 QARATLTEREGRRIIYIGYLDATDRIEAQKKQYLQQQALEQA 412



 Score = 57.3 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/278 (12%), Positives = 88/278 (31%), Gaps = 15/278 (5%)

Query: 325 TVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTL----LDAPKLSDNN 379
            V+K    +F++ +  +      +   +    + +       + T     L         
Sbjct: 11  LVNKLNEAYFLHRNLEIILSCFSADAHVVGVSTGEVSNGLEQIRTAVSKGLATVPFVSGR 70

Query: 380 AIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVD 439
             + +ML    +  +  S +   +    E  LA  FI      +         I      
Sbjct: 71  ETEVLMLRERRKDLVEVSVKYTLLSQQGEPVLA-PFIVTANCEEESHGWKITLIHSSMPG 129

Query: 440 TRINKRKMEIEVMQLCSILEATSDGIAIINREGII--LSTNRAVSKLFGYPVED---ILR 494
             +    +E    +L ++++A   G+A+     I      ++ V +L GY  E+   +++
Sbjct: 130 DYVEAFFLET---KLQNVIDAIPGGVAVYRVSDIFDMQYFSKGVPELTGYTPEEYRRVIK 186

Query: 495 KPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY 554
              +         +    L      +     E      + +   + ++  +         
Sbjct: 187 DETSAMPSSEDTQMAMRKLRYAAEHNASADFEFRMYHRSGDRVWVRIQAKVIGYEDGYPL 246

Query: 555 S-LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLAR 591
                H+I+  K+ + +L  A++  ++  +  SD +  
Sbjct: 247 LHCVYHNITARKKAELELLKARQENDRLLAEYSDSVNN 284



 Score = 45.0 bits (105), Expect = 0.059,   Method: Composition-based stats.
 Identities = 36/352 (10%), Positives = 92/352 (26%), Gaps = 44/352 (12%)

Query: 311 LSAYFDEGENLTPETVDKCPIP-FFVYSHGN----LFYANPSFLLLTKYKSVDDIEIAGG 365
                D       ++V+  P     +   G       + +  FL +T+    +       
Sbjct: 267 ARQENDRLLAEYSDSVNNSPGGLVTIEITGAGMPFPIFVSQGFLNITRMTR-EQFYQVYV 325

Query: 366 LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
            S       L  ++  + +  YR  +           +       + +         +  
Sbjct: 326 DSAF---DGLHPDDIQRVIAAYRRLQKPGDQMGDTFRLVCGDGTYVWVQARATLTEREGR 382

Query: 426 ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
             +       +  D    ++K  ++   L   ++ ++      +       + + V  LF
Sbjct: 383 RIIYI--GYLDATDRIEAQKKQYLQQQALEQAIDHSNLMFWEYDCSSHTAYSGQKVQSLF 440

Query: 486 GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK---EEKLLSLR 542
           G   + +   P T                +  +     +L++      K    ++ + + 
Sbjct: 441 GL-GKIVDNFPETWLRMGYIHEEDQKTYRKAFADIDNGSLQEEFSARAKIPGSDRWIWMN 499

Query: 543 IIIKKLPFSSCY----SLTMHDISEWKQEKNKLSHAKKIAEKES-------SHKSDFLAR 591
                +   +        T  +I  +K+ +       +     S           +    
Sbjct: 500 FRCNVICDDTGRAIRTICTAENIDRYKELEQTFFEVMRQNGVTSWKYDIKRQAVLEGNKV 559

Query: 592 VS------HEIRTPLTAIIGFSEVIKNQRF-GPLGNPRYIEYANYIDRSGNL 636
           VS      H+I+          E +   +   P   P+      +I R G  
Sbjct: 560 VSAYGLHAHQIQ----------EGLIEGKLFHPEDAPKARLLLQHI-REGER 600


>gi|299133592|ref|ZP_07026786.1| integral membrane sensor signal transduction histidine kinase
           [Afipia sp. 1NLS2]
 gi|298591428|gb|EFI51629.1| integral membrane sensor signal transduction histidine kinase
           [Afipia sp. 1NLS2]
          Length = 525

 Score =  273 bits (699), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 102/249 (40%), Positives = 155/249 (62%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           I E +Q K     A+  AE  +  KS FLA++SHE+RTPL AI+GFSEV+K++ FG    
Sbjct: 234 IGELEQAKAISDEARHRAEAANVSKSRFLAQMSHELRTPLNAILGFSEVMKSEIFGSHAV 293

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
             Y +Y+  I  SG  +L+++N++LD+S+IE+G+  L+ EP SL   V++   L++L A+
Sbjct: 294 AVYKDYSADIHNSGVHLLNLINEILDLSRIEAGRYELNEEPFSLVHVVADCHHLLKLRAS 353

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
            + I I   F + +P++  D R+ +QI LN+LSNAI FTP GG+I + +  T++    L 
Sbjct: 354 SRGITIHEVFEDEMPKLWGDERATRQIVLNLLSNAIKFTPQGGEIWLKSGWTASGGQYLS 413

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V+DTG G+   E+   +  FGQ  NS +   +G GLGLP+AK ++D + G F + S    
Sbjct: 414 VKDTGSGIPEDEIPIVLASFGQGSNSIKSAEQGAGLGLPIAKNLIDMHGGTFTLKSKLRI 473

Query: 801 GTLIEIIFP 809
           GT + I FP
Sbjct: 474 GTEVIITFP 482


>gi|110639462|ref|YP_679671.1| sensor histidine kinase/response regulator fusion protein
           [Cytophaga hutchinsonii ATCC 33406]
 gi|110282143|gb|ABG60329.1| sensor histidine kinase/response regulator fusion protein
           [Cytophaga hutchinsonii ATCC 33406]
          Length = 856

 Score =  273 bits (699), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 87/354 (24%), Positives = 153/354 (43%), Gaps = 24/354 (6%)

Query: 475 LSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
           L  +  +  +F      I    F   L +    + ++   +        + E        
Sbjct: 244 LFWSNEMYNIFELDRSVIPEINFIDSLIKEESEITHNRRKKNFQPGASYSDELKIRTVNG 303

Query: 535 EEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK-------NKLSHAKKIAEKESSHKSD 587
            EK+L     +            + DI+  K+ +         +  AK+ AE  S  K+ 
Sbjct: 304 NEKVLISNGYVVNEENGLVVHGAIIDITPLKKAELTAREQQELMRVAKEKAESASQFKTR 363

Query: 588 FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
           FL+ +SHEIRTP+ AI+GF+ ++  Q        +  +    I  SG L+L ++ ++LDI
Sbjct: 364 FLSNMSHEIRTPINAILGFTAILSKQEL----TEQQKKLLKNISISGELLLKLIGNILDI 419

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQ 706
           SKIE GK+ +  +   L E++   +S  Q  A+EK +        +IP  +L D   + Q
Sbjct: 420 SKIEEGKVIIESKSFHLKESIRSVLSPFQHSASEKGLQFHLIIDKSIPDYLLGDFPRISQ 479

Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSNEE----VILRVRDTGVGMTNYELEKAMKPFGQ 762
           + +N++ NA+ FT S G I +S   T  ++    V   + DTG+G+   + ++  + F Q
Sbjct: 480 VLVNLIGNALKFT-SHGNITVSVLLTKKQDGLSFVEFVINDTGIGIQANKQDEIFESFTQ 538

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS-----TPAK--GTLIEIIFP 809
              S  ++  G+GLGL + + +V    G   + S        K  G+      P
Sbjct: 539 ANESISVKYGGSGLGLSIVQEVVHLMGGNIQVQSPAHYNERGKGYGSKFFFTLP 592


>gi|153939122|ref|YP_001389721.1| sensor histidine kinase [Clostridium botulinum F str. Langeland]
 gi|152935018|gb|ABS40516.1| sensor histidine kinase [Clostridium botulinum F str. Langeland]
 gi|295317809|gb|ADF98186.1| sensor histidine kinase [Clostridium botulinum F str. 230613]
          Length = 464

 Score =  273 bits (699), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 70/240 (29%), Positives = 123/240 (51%), Gaps = 8/240 (3%)

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           L++      K+   K++F++ VSHE+RTPLT+I G++  +       +      +    I
Sbjct: 230 LNYMADEIVKKDQLKNEFISSVSHELRTPLTSIKGWAITL---NSNEVDKEILKDGLKII 286

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
           +     +  +V +LLD SK  SGKM L+ E +S+ E +      ++ YA   RI  + + 
Sbjct: 287 EDESERLSGMVEELLDFSKFVSGKMKLNKEEISICEIIDTVRKQLEPYAYRNRINFKATC 346

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
            N +P I  D   +KQ+ +N+L NA  FTP GG + ++T +     + + V+DTGVG++ 
Sbjct: 347 INKLPNIYGDRNRIKQVLINLLDNAFKFTPEGGLVELNTKYEEE-YITIVVKDTGVGISK 405

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            +L +  + F +  + +       G+GL +   ++  + G  +I S   KGT I I  P+
Sbjct: 406 EDLPRVKEKFYKGNSGKSKN----GIGLSICDEIIKLHNGVLHIESEENKGTTISIKLPI 461


>gi|332524525|ref|ZP_08400732.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax benzoatilyticus
           JA2]
 gi|332107841|gb|EGJ09065.1| PAS/PAC sensor hybrid histidine kinase [Rubrivivax benzoatilyticus
           JA2]
          Length = 663

 Score =  273 bits (699), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 92/489 (18%), Positives = 168/489 (34%), Gaps = 42/489 (8%)

Query: 355 KSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR------- 407
            S     +A  L+ +   P           + Y S        A    IQ          
Sbjct: 19  PSAQWPSLADRLAAVWGGPPGVSACVEVDGVRYASRGHLDRPDAHAAEIQRAGVAVGCIG 78

Query: 408 ----ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
                ++                           +     +  +        ++    S 
Sbjct: 79  VQFHGSAGVEAAASVCAGEACRLLRAVASHVGSRLAQHEAQAALRESEQHFRNVANGGSA 138

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
            I     +      N    +  G          +   +  +    +     +    D R+
Sbjct: 139 LIWTAELDKRCTYFNDVWLRFTGRTTAQETGAGWLEGVHPDDRDWVVRRYEQAF--DRRE 196

Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFS----SCYSLTMHDISEWKQEKNKLSHAKKIAE 579
           +   +      + +   LR        S      Y     D+++ +    +L+H ++  E
Sbjct: 197 SFRMVYRLRRADGEYRWLRDDGAPRHDSLGRFVGYIGHCVDVTDQQNADAELAHHRRHLE 256

Query: 580 KESSHKSD------------------FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           +  + ++                   FLA +SHE RTPL AI+G + +I+     P    
Sbjct: 257 RLVAERTRELAQAKEAAEAANLAKSTFLANMSHESRTPLNAILGMAHLIRRSGVTP---- 312

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
           +  E    ID +G  +LD ++ LLD+SKIE+  + L   P+   + V++  +++   A  
Sbjct: 313 QQAERLARIDAAGAHLLDTISTLLDLSKIEADMLALDHVPLQAADVVADVAAMLADGARA 372

Query: 682 KRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEV--I 738
           KR+ +RT  A     +L D   ++Q   N ++NAI FT +G   + ++      + V   
Sbjct: 373 KRLELRTELAPLPGPLLGDPTRLRQALTNYVANAIKFTDAGSVTLRVALQSEPPDAVLLR 432

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
             V DTG+G+    L +    F Q   S   R  GTGLGL L + +     G+    S P
Sbjct: 433 FEVEDTGIGIPADVLPRLFNAFEQADGSITRRYGGTGLGLALTRRLARRMGGEAGARSLP 492

Query: 799 AKGTLIEII 807
            +G++    
Sbjct: 493 GEGSVFWFT 501



 Score = 65.4 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/259 (10%), Positives = 59/259 (22%), Gaps = 25/259 (9%)

Query: 85  FTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHID-PNNHIGDLLKRQNTW 143
             W  +        ++   +  G    +  G    +       D           R+ ++
Sbjct: 139 LIWTAELDKRCTYFNDVWLRFTGRTTAQETGAGWLEGVHPDDRDWVVRRYEQAFDRRESF 198

Query: 144 YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
                L   +G   Y  +     P +     F G+ G  +        +  A      + 
Sbjct: 199 RMVYRLRRADGE--YRWLRDDGAPRHDSLGRFVGYIGHCV--DVTDQQNADAELAHHRRH 254

Query: 204 FSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKV----------------SSLTEYY 247
              L   +    +  KE  +  +         M ++                 S +T   
Sbjct: 255 LERLVAERTRELAQAKEAAEAANLAKSTFLANMSHESRTPLNAILGMAHLIRRSGVTPQQ 314

Query: 248 AHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRN 307
           A +   +      LL +    +    D   I  +            +   +    L+   
Sbjct: 315 AERLARIDAAGAHLLDT----ISTLLDLSKIEADMLALDHVPLQAADVVADVAAMLADGA 370

Query: 308 HPSLSAYFDEGENLTPETV 326
                    E   L    +
Sbjct: 371 RAKRLELRTELAPLPGPLL 389


>gi|307277930|ref|ZP_07559014.1| PAS domain S-box [Enterococcus faecalis TX0860]
 gi|306505327|gb|EFM74513.1| PAS domain S-box [Enterococcus faecalis TX0860]
          Length = 591

 Score =  273 bits (699), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 72/364 (19%), Positives = 160/364 (43%), Gaps = 32/364 (8%)

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
            Q   +L+    G+ II+ +G +   N  + ++ G        K       +        
Sbjct: 250 EQFHELLDELMIGVFIIDTQGRLRLLNPKMQEMLGLSA-----KNMQSNYLEVIQDADLI 304

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY--SLTMHDISEWKQEKN 569
           +L   +  +     ++IT+        L L +       ++ Y      +D++  +Q + 
Sbjct: 305 HLIHQVVAEKNSLHQEITVTQGPTPLRLDLSLRYLDDQSANDYQVLGIAYDLTRVRQLE- 363

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE-YAN 628
                          + DF++ VSHE++TP+T+++GF+E + +   G   +P+ ++ + +
Sbjct: 364 -------------KMQKDFVSNVSHELKTPVTSLLGFTETLID---GAKEDPKVLDQFLH 407

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            + +    +  ++ ++L++S+  +  +    + ++L++ ++E +   Q     K++    
Sbjct: 408 IMQKDAQRLQQLIQEILELSRGGA-TIPYAEQEITLEKFITEILGSYQQQLAAKQLK--- 463

Query: 689 SFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
           +  + +P             I  N++ NAI ++   GQI IS     N+++ L V+DTG+
Sbjct: 464 TVVHGLPESQFFTKYELFYPIVKNLIENAIQYSQENGQITISYAIE-NQQLRLSVQDTGI 522

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G++  + E+  + F ++  ++     GTGLGL + +   +   GK  I S    GT   I
Sbjct: 523 GISQKDQERIFERFYRVDKARSRHSGGTGLGLAIVQNYTELLGGKIAIDSHLGLGTTFTI 582

Query: 807 IFPL 810
             PL
Sbjct: 583 TLPL 586


>gi|270159374|ref|ZP_06188030.1| sensory box histidine kinase/response regulator [Legionella
           longbeachae D-4968]
 gi|289165811|ref|YP_003455949.1| sensory histidine-kinase / response regulator [Legionella
           longbeachae NSW150]
 gi|269987713|gb|EEZ93968.1| sensory box histidine kinase/response regulator [Legionella
           longbeachae D-4968]
 gi|288858984|emb|CBJ12910.1| putative sensory histidine-kinase / response regulator [Legionella
           longbeachae NSW150]
          Length = 762

 Score =  273 bits (699), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 103/456 (22%), Positives = 197/456 (43%), Gaps = 25/456 (5%)

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
            D P +     I+   L   +    +          + +    +T       +     + 
Sbjct: 16  FDMPWVESAETIRNNDLRVME-LNSSLEMEETATLADGQQVTVLT-KKTPLRDDQGNVIG 73

Query: 430 QNGIEPEDVDTRINKRKMEIEVM----QLCSILEATSDGIAIINREGIILSTN----RAV 481
             G+       +  + ++          L +I+      +   ++ G+    N    ++ 
Sbjct: 74  IIGVSLNITHRKQREERLRSNQENTQSTLENIIAHMPGHVYWKDKNGVYQGCNNLQAQSA 133

Query: 482 SKLFGYPVEDILRKP-FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
              FGY   +++ K  F +  E+    ++     +IL     + +E   +    +E +  
Sbjct: 134 GLQFGY---EVVGKTDFDLPWEKEQAELIRKNDRQILETGETEVIE-EIIQVKGKEAIFL 189

Query: 541 LRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
                 +              DI+E K+ + +L+ AK+ AE  +  K++FL  + H+IRT
Sbjct: 190 SHKSPIRNKNGEIIGVLGMSVDITERKKIEAELNIAKEKAETANRAKTEFLENMRHDIRT 249

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
           PLT I+GFS++IK +      NPR  EYA+ +  S + +LD ++++L+   + SG++   
Sbjct: 250 PLTGIVGFSDIIKEEA----QNPRIKEYADNLVASSHALLDFMDEVLEAIHVSSGEIPRV 305

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIH 717
            +   L   +   I L +  A  K + +   F  NIP+ ++ D   + +I L +L+N+++
Sbjct: 306 KKKFELQNLLQHLIDLNKAKAFSKHLELSLDFDKNIPKYLIGDNIRIHRIILELLTNSLN 365

Query: 718 FTPSG-GQIIISTTHTSNEEVI--LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGT 774
           FT SG  ++          EVI    V DTG+G+   + ++    F ++  S +   +G 
Sbjct: 366 FTDSGFVKLTAQLAKQEGREVILKFIVEDTGIGIPQDKQQEIFLQFKKLTPSYKGIYKGA 425

Query: 775 GLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           GLGL + K  VD   G+ Y+ ST +KGT+   I PL
Sbjct: 426 GLGLAVLKQFVDELDGEIYVKSTVSKGTIFTCIIPL 461


>gi|331700135|ref|YP_004336374.1| multi-sensor hybrid histidine kinase [Pseudonocardia dioxanivorans
           CB1190]
 gi|326954824|gb|AEA28521.1| multi-sensor hybrid histidine kinase [Pseudonocardia dioxanivorans
           CB1190]
          Length = 1025

 Score =  273 bits (698), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 90/537 (16%), Positives = 178/537 (33%), Gaps = 52/537 (9%)

Query: 317 EGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
                            FV       +   + +    Y     + +   +   L    L+
Sbjct: 91  RRARRVSVLALLLNGAVFVGLVAVYTFDTETAIWAVLY----VLPMEAAIRFQLRGAMLT 146

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
                    +  +    +     L      R     +         Q      +      
Sbjct: 147 IGALTVVYTIREAVGAVVYGHPFLIVSITYRMGIGCIIASVAGAIAQSVTQDRRQLAVLG 206

Query: 437 DVDTRINKR-----KMEIEVMQLCSILEATSDGIAIINR-EGIILSTNRAVSKLFGYPVE 490
            V   +         +E     L  +    +  +A+++  +G +           G    
Sbjct: 207 RVARTVASAPTLSSVLERAADDLADLFRVPAVVLALVDPEDGRLRV---RAEH--GGRPG 261

Query: 491 DILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF 550
                      +      +        +      L +  +G     ++    +    L  
Sbjct: 262 SAPGTEIPRHGDGPVARAIADRRAVWAATGTSNGLLRRLMGR---GRVAGALVAAPLLAR 318

Query: 551 SSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSH-------------------------K 585
                + + D  E  +  +    A                                   K
Sbjct: 319 DEVVGVVLLDTGEQNRRSSAAELALAETVAGQLAGAITGARLFEQAQAARAAADAANEAK 378

Query: 586 SDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLL 645
           S FLA +SHEIRTP+ A+IG +E++              +Y   I +S + +L ++ND+L
Sbjct: 379 SAFLANMSHEIRTPMNAVIGMTELLSATSL----TEEQQDYTGVIAQSADGLLTVINDVL 434

Query: 646 DISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSV 704
           D SKIE+GK+ L  +     E + +A+ L+   A  K + +  +     P  +  D   +
Sbjct: 435 DFSKIEAGKLELDRDAFDPREVIEDALGLLAPRAAAKGLELVAAADGVPPAAVFGDPGRL 494

Query: 705 KQIALNILSNAIHFTPSGGQI-IISTTHTSNEEVILR--VRDTGVGMTNYELEKAMKPFG 761
           +QI +N++ NA+ FT  G  +  +S     ++   LR  V DTG+G+   ++ +  + F 
Sbjct: 495 RQILVNLVGNAVKFTERGEVVVTLSAVRADDDRWRLRIAVADTGIGIPAEQIPRLFRSFS 554

Query: 762 QIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
           Q+  S   R  GTGLGL +++ + +   G   + S P +G++  +   + + + P D
Sbjct: 555 QVDESATRRHGGTGLGLVISRRLAELMGGTVEVASEPGRGSVFTVTL-VGEAASPPD 610


>gi|303248201|ref|ZP_07334465.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           fructosovorans JJ]
 gi|302490465|gb|EFL50374.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           fructosovorans JJ]
          Length = 492

 Score =  273 bits (698), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 88/463 (19%), Positives = 167/463 (36%), Gaps = 33/463 (7%)

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
             L               ++ R     +A    +     + +    +   P  + +   E
Sbjct: 37  ERLFAYGGALFAAGWVYWLVGRRLSRSLAEVIAVARAIGDGDYRHRIHLSPGGEFSALAE 96

Query: 427 NMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG 486
            +       E     I       +  QL +IL+   +G+ +++  G +   N A+ ++  
Sbjct: 97  AVNHMARRIESHIGTIT-----DQKTQLEAILDGMREGVMVLDAAGKVRVANPALRRIAP 151

Query: 487 YPVEDILRKPFTVFLEQNTPSVMNHYL-TEILSLDLRQTLEKIT-LGSTKEEKLLSLRII 544
              + + R+P  V          +  L      L    TLE     G   E  L+ L + 
Sbjct: 152 VTGDVVGRRPIEVAPSPELQMACDQLLGEAAADLPAASTLEIELGPGRYYEVSLVRLGLD 211

Query: 545 IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
                      L  HD+SE ++               S  + DF A V+HE+RTPLT+I 
Sbjct: 212 PVGGRRDHGAVLVFHDVSETRRL--------------SRVRRDFAANVTHEMRTPLTSIK 257

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           G++E +      P   P    + + I ++ N +  +V+D+L ++++E             
Sbjct: 258 GYAETLL--AAAPELAPEKRRFLDVILKNANHMSKMVDDILTLARLEEQPDEGDERASDR 315

Query: 665 DE-------AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH 717
            E       A+++A+   Q  A+ + +            +  D   + Q+  N+L NA  
Sbjct: 316 PEPKTDAVAALADAVRECQTLADARNLSFDNHLPETELFVRCDGGQLTQVWRNLLENATR 375

Query: 718 FTPSGGQIIISTTHTSNEE-VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGL 776
           F P G +I ++    +    V   V D G G+   E ++  + F ++   +      TGL
Sbjct: 376 FAPEGSRIAMTACPDAEARAVTFGVLDQGPGIPPEERQRVFERFYRVERHRSKTQGSTGL 435

Query: 777 GLPLAKAMVDANMGKFYIFSTPAK--GTLIEIIFPLYDTSHPH 817
           GL + K +V+ + G+ +      +  G       P      P 
Sbjct: 436 GLAIVKHIVERHGGRIWADRGRGEMTGAAFYFTLPALARPEPE 478


>gi|322421319|ref|YP_004200542.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
 gi|320127706|gb|ADW15266.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
          Length = 1004

 Score =  273 bits (698), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 92/654 (14%), Positives = 213/654 (32%), Gaps = 50/654 (7%)

Query: 189 VDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSP-PPHLRMKNKVSSLTEYY 247
              D     +   +    +   +K     E+  Y   +   P     R  N+  +     
Sbjct: 231 AGPDEGTEIRAGLQGDDRIISYRKLRLPGERTPYLYVTAGVPVDMATREANRSMAYGAAL 290

Query: 248 AHKDDVLKTEKYPLLT---SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKE-SFEYL 303
                VL      L+      +     ++    +       +     +  +    +  + 
Sbjct: 291 LSSFLVLAWVAAVLIGKRCIGDRIKVLEDASQRLAGGDTRVRVSDLVVGGDLGSLARTFD 350

Query: 304 SHRNHPSLSA-YFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLTKYKSVDDIE 361
           +  +            E      ++  P     + + G +   N + L +    S+  ++
Sbjct: 351 AMADQLRAREDALAASEAFMNTIIETEPECVKLLDAEGRVQMMNRAGLNMIDADSLAQVQ 410

Query: 362 IAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKA 421
                  +    + +     + V L       I  +    TI     + + +        
Sbjct: 411 GECMYPLVTPEYRDAFIELTQNVFL------GIPGNLAFETIGLKGRH-VWLDTHAVPFR 463

Query: 422 NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRA 480
           N+  E +   GI  +  + R ++ +    ++   S+++ +  GI I + E G  +  N+A
Sbjct: 464 NERGEIVSLLGITRDITEHRKSEEERRENLLLFESLMQYSPMGIRIFDGESGTCILMNQA 523

Query: 481 VSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
              + G  +E +  + F         S +     ++L     + +E     S  +E  +S
Sbjct: 524 TVDIAGGRMEAMKGQDFRDL-HSWRESGLLEVAEKVLEDGAARVVEVDLRTSFGKEVRMS 582

Query: 541 LRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKI--AEKESSHKSDFLARVSHEIRT 598
             +    +       +   D+S+ K+   +    +      ++          ++H+   
Sbjct: 583 YSVSRLLIKEKQHLLVVGRDVSDEKRLAEEKKRMEAQMLHVQKLESLGVLAGGIAHDFNN 642

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
            L AI+G +E+   +                I++S     D+   +L  S    GK +  
Sbjct: 643 ILMAIMGNAELALMRL---PEESEARTNLQNIEKSSKRAADLAQQMLAYS----GKGSFV 695

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718
            E   ++  + E   ++++  ++K +++R + A ++P +  D   ++Q+ +N++ NA   
Sbjct: 696 IEEFDVNALIMEMGHMLEVSISKK-VVMRFNLAADLPLVEVDATQIRQVVMNLVINASEA 754

Query: 719 -TPSGGQIIIST-----------------THTSNEEVILRVRDTGVGMTNYELEKAMKPF 760
                G I I+T                      + V  +V D G GM      +   PF
Sbjct: 755 VGDQKGVITITTGTKHCDAAYLSGLWINDQLQEGDYVYFQVTDDGCGMDEATRARIFDPF 814

Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
                    +  G GLG+     +V  + G   + S P  G+   +  P    +
Sbjct: 815 FTT------KFTGRGLGMAAVLGIVRGHKGTIEVRSEPGAGSTFTVYLPALPAA 862



 Score = 41.2 bits (95), Expect = 0.77,   Method: Composition-based stats.
 Identities = 37/376 (9%), Positives = 93/376 (24%), Gaps = 29/376 (7%)

Query: 89  IDAHGYLKEISEELPKTIGNYA-FKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKT 147
           +DA G ++ ++      I   +  ++ G  +  +    + D    +      QN + G  
Sbjct: 384 LDAEGRVQMMNRAGLNMIDADSLAQVQGECMYPLVTPEYRDAFIEL-----TQNVFLGIP 438

Query: 148 TLWP---IEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
                  I     +V +D  A+P  +   E     G  I              +     F
Sbjct: 439 GNLAFETIGLKGRHVWLDTHAVPFRNERGEIVSLLG--ITRDITEHRKSEEERRENLLLF 496

Query: 205 SHLHEIKK-GHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
             L +    G    + E             +        +          L + +   L 
Sbjct: 497 ESLMQYSPMGIRIFDGESGTCILMNQATVDIA----GGRMEAMKGQDFRDLHSWRESGLL 552

Query: 264 SEESSLPEQEDFHTINLNQYT-----KKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
                + E      + ++  T      +  +   +   KE    L      S      E 
Sbjct: 553 EVAEKVLEDGAARVVEVDLRTSFGKEVRMSYSVSRLLIKEKQHLLVVGRDVSDEKRLAEE 612

Query: 319 ENLTPETVDKCP--IPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTL-----LD 371
           +      +          V + G     N   + +     +  + +            ++
Sbjct: 613 KKRMEAQMLHVQKLESLGVLAGGIAHDFNNILMAIMGNAELALMRLPEESEARTNLQNIE 672

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
                  +  + ++ Y    + +     ++ +     + L ++                 
Sbjct: 673 KSSKRAADLAQQMLAYSGKGSFVIEEFDVNALIMEMGHMLEVSISKKVVMRFNLAADLPL 732

Query: 432 GIEPEDVDTRINKRKM 447
            +E +    R     +
Sbjct: 733 -VEVDATQIRQVVMNL 747


>gi|253576699|ref|ZP_04854026.1| histidine kinase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843909|gb|EES71930.1| histidine kinase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 482

 Score =  273 bits (698), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 72/258 (27%), Positives = 128/258 (49%), Gaps = 8/258 (3%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E  +    L++  +   + +  K DF++ +SHE+RTPLT I G+SE + +  F P     
Sbjct: 223 ELGELAATLNYMAEEIVRSNQIKDDFISSISHELRTPLTGIKGWSETLTSGGFDP---EE 279

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                  I +  + ++ +V ++LD SK++S +M L    V+L E + E +  V   A +K
Sbjct: 280 TKIGIGIIAKETDRLIGLVEEILDFSKLQSNEMKLVIGEVNLKELLQETMLNVWAKAEQK 339

Query: 683 RILIRT-SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
            I ++     +    +  D   +KQ+ LN++ NAI F+     I +       E V + V
Sbjct: 340 HIQLKLEDKTDGTAIVSGDGNRLKQVFLNVVDNAIKFSHEQSWIHLVIDRLDAERVKVDV 399

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            D+G+G++   L+K    F Q+      +G GTGLGL +++ +V+ + G+  I S    G
Sbjct: 400 IDSGIGISEEYLKKVKDRFFQV----NHQGGGTGLGLAISQQLVELHHGEMEIQSELGVG 455

Query: 802 TLIEIIFPLYDTSHPHDC 819
           T + +I PL   +   + 
Sbjct: 456 TTVSVILPLLSDTQREEA 473


>gi|59713255|ref|YP_206030.1| hybrid two component sensor histidine kinase [Vibrio fischeri
           ES114]
 gi|59481503|gb|AAW87142.1| hybrid two component sensor histidine kinase [Vibrio fischeri
           ES114]
          Length = 575

 Score =  273 bits (698), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 78/249 (31%), Positives = 126/249 (50%), Gaps = 7/249 (2%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E K   +K    KK AE       DF+A ++HE+RTPL  ++G +E++++          
Sbjct: 191 ERKYLLDKTLKEKKRAESSERATRDFVAMINHELRTPLNGLLGSAELMEDTEI----TDY 246

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             +    I +SG ++  I+NDLLD SK+ +G + L          V     +      EK
Sbjct: 247 QKKLLETIHQSGQMLRIIINDLLDFSKMSAGMLELKMANFKPCILVKTIEQIFTPQMAEK 306

Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
            +      A+N+P+ ++ D+  V+QI +N++ NA  FT SG  I +      N  V++ V
Sbjct: 307 CLRFDIHIADNLPQTLMGDIDRVQQILVNLIGNAFKFTKSG-HISLKVGWQKNALVLI-V 364

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            DTG G+   + +   +PF Q+ NS Q + EGTGLGL + K +VDA  G+    S   +G
Sbjct: 365 SDTGCGIPQDKQKLLFEPFTQVDNSSQRQFEGTGLGLSICKLLVDAMSGELSFKSELGEG 424

Query: 802 TLIEIIFPL 810
           +  ++  PL
Sbjct: 425 SEFQVKLPL 433


>gi|86158048|ref|YP_464833.1| PAS/PAC sensor signal transduction histidine kinase
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85774559|gb|ABC81396.1| PAS/PAC sensor signal transduction histidine kinase
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 377

 Score =  273 bits (698), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 82/359 (22%), Positives = 151/359 (42%), Gaps = 15/359 (4%)

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           S+L++  D + I +  G IL  N    +LFGY  E++L +P  V L     ++   + + 
Sbjct: 4   SLLDSAPDAMVIADDAGAILFVNAHAERLFGYRSEELLGRPVEVLLPARYRTMHQVHRSA 63

Query: 516 ILSLDLRQT--LEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLT--MHDISEWKQEKNKL 571
             +    +   L     G   +       I +  +       +   + D +E ++ + + 
Sbjct: 64  YQAAPRTRPMGLGLDLSGLRHDGAEFPAEISLSPIQVDGRSCVIAAVRDATERRKIEERA 123

Query: 572 SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYID 631
              +K A++E   + +FL+  SHE+RTP+TA+          R G    P  ++    ++
Sbjct: 124 RLWRK-AQEEVRERDEFLSVASHELRTPVTALQLQLLHRAALRSGEGLPPDVVDRLETLE 182

Query: 632 RSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA 691
           R    +  +V +LLD+S++  GK+ L  E + L E   +A    Q         +     
Sbjct: 183 RQTRRLAALVGELLDVSRMRLGKIELRREALDLAEVARDAAGHAQGDLARSGSKLALDLQ 242

Query: 692 NNIPRILA--DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMT 749
                +    D   ++Q+  N+L NA  F   G  I +  T   +    +RV D G+G+ 
Sbjct: 243 P----VTGAWDRTRLEQVIANLLVNAAKFG-QGRPIALHVT-GDDGTARVRVSDQGIGIA 296

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
             +  +    F +   +Q     G GLGL +A+ +V+A+ G   + STP  G    +  
Sbjct: 297 PEQQVRVFDRFARAVPAQN--FGGLGLGLYIARQIVEAHGGTIEVASTPGAGATFTVDL 353



 Score = 50.0 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 40/147 (27%), Gaps = 17/147 (11%)

Query: 325 TVDKCPIPFFV-YSHGNLFYANPSFLLLTKYKSVDDIEIA--------------GGLSTL 369
            +D  P    +    G + + N     L  Y+S + +                    S  
Sbjct: 5   LLDSAPDAMVIADDAGAILFVNAHAERLFGYRSEELLGRPVEVLLPARYRTMHQVHRSAY 64

Query: 370 LDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMP 429
             AP+         +   R D     A   L  IQ +  + +        +  +  E   
Sbjct: 65  QAAPRTRPMGLGLDLSGLRHDGAEFPAEISLSPIQVDGRSCVIAAVRDATERRKIEERAR 124

Query: 430 QNGIEPEDVDTRINKRKMEIEVMQLCS 456
                 E+V  R     + +   +L +
Sbjct: 125 LWRKAQEEVRERDE--FLSVASHELRT 149



 Score = 46.6 bits (109), Expect = 0.016,   Method: Composition-based stats.
 Identities = 24/275 (8%), Positives = 62/275 (22%), Gaps = 7/275 (2%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D  G +  ++    +  G  + +++G  +  +    +   +       +           
Sbjct: 17  DDAGAILFVNAHAERLFGYRSEELLGRPVEVLLPARYRTMHQVHRSAYQAAPRTRPMGLG 76

Query: 150 WPIEG---TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
             + G        P +++  PI    R          V             +   K    
Sbjct: 77  LDLSGLRHDGAEFPAEISLSPIQVDGRSCV----IAAVRDATERRKIEERARLWRKAQEE 132

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEE 266
           + E  +  S    E     +        R   +                  +   L +  
Sbjct: 133 VRERDEFLSVASHELRTPVTALQLQLLHRAALRSGEGLPPDVVDRLETLERQTRRLAALV 192

Query: 267 SSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
             L +        +    +      +  ++    +    R+   L+            T 
Sbjct: 193 GELLDVSRMRLGKIELRREALDLAEVARDAAGHAQGDLARSGSKLALDLQPVTGAWDRTR 252

Query: 327 DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIE 361
            +  I   + +        P  L +T       + 
Sbjct: 253 LEQVIANLLVNAAKFGQGRPIALHVTGDDGTARVR 287


>gi|70726426|ref|YP_253340.1| respiratory response protein SrrB [Staphylococcus haemolyticus
           JCSC1435]
 gi|68447150|dbj|BAE04734.1| staphylococcal respiratory response protein SrrB [Staphylococcus
           haemolyticus JCSC1435]
          Length = 585

 Score =  273 bits (698), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 63/369 (17%), Positives = 146/369 (39%), Gaps = 40/369 (10%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
             +  +     S++ +  +G+  +N +  ++ +N+                     +++ 
Sbjct: 249 EALSTQKNIRDSLINSMIEGVLGLNDKREVILSNKMA-------------DDIIKSIDKT 295

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDIS 562
               +   +         +  E            + +   ++++         + + D++
Sbjct: 296 VYKEIEKQIEATFVSKDTEFQEYEINNKY----YVIIMSYVERIQQDGRSGIVVIIRDMT 351

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
                                 K DF+A VSHE+RTP++ + G++E I +          
Sbjct: 352 --------------NEHNLDQMKKDFIANVSHELRTPISLLQGYTESIVDGIVTE--PEE 395

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN-- 680
             +  + +      +  +VN+LL+++++++  + ++ E   +   +S+     +  A   
Sbjct: 396 IRDSLSIVLDETKRLNRLVNELLNVARMDAEGLTVNKEKQPIKPLLSKMQMKYRQQAEDL 455

Query: 681 EKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILR 740
           E  + +  +  + +     D   + Q+  N++ NA  +T  G  I I+TT T +    L 
Sbjct: 456 ELNMSLEPNIDDELWEY--DADRIDQVLTNLIDNATRYTQPGDSISITTT-TDDSYQTLH 512

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           ++DTG G++   LE     F ++  S+    +GTGLGL + K +++ + G   + S   K
Sbjct: 513 IKDTGSGISPEHLELVFDRFYKVEASRTRGKQGTGLGLFICKMIIEEHGGTIKVESKVNK 572

Query: 801 GTLIEIIFP 809
           GT   I  P
Sbjct: 573 GTTFIIKLP 581


>gi|322804626|emb|CBZ02178.1| osmosensitive K+ channel histidine kinase KdpD [Clostridium
           botulinum H04402 065]
          Length = 464

 Score =  273 bits (698), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 71/240 (29%), Positives = 123/240 (51%), Gaps = 8/240 (3%)

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           L++      K+   K++F++ VSHE+RTPLT+I G++  +       +      +    I
Sbjct: 230 LNYMADEIVKKDQLKNEFISSVSHELRTPLTSIKGWAITL---NSNEVDKEILKDGLKII 286

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
           +     +  +V +LLD SK  SGKM L+ E +S+ E +      ++ YA   RI  + + 
Sbjct: 287 EDESERLSGMVEELLDFSKFVSGKMKLNKEEISICEIIDTVRKQLEPYAYRNRINFKATC 346

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
            N +P I  D   +KQ+ +N+L NA  FTP GG + +ST +     + + V+DTGVG++ 
Sbjct: 347 INKLPNIYGDRNRIKQVLINLLDNAFKFTPEGGLVELSTKYKEE-YITIVVKDTGVGISK 405

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            +L +  + F +  + +       G+GL +   ++  + G  +I S   KGT I I  P+
Sbjct: 406 EDLPRVKEKFYKGNSGKSKN----GIGLSICDEIIKLHNGVLHIESEENKGTTISIKLPM 461


>gi|312886339|ref|ZP_07745950.1| signal transduction histidine kinase with CheB and CheR activity
            [Mucilaginibacter paludis DSM 18603]
 gi|311301183|gb|EFQ78241.1| signal transduction histidine kinase with CheB and CheR activity
            [Mucilaginibacter paludis DSM 18603]
          Length = 1217

 Score =  273 bits (698), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 107/638 (16%), Positives = 210/638 (32%), Gaps = 36/638 (5%)

Query: 186  VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL-RMKNKVSSLT 244
               V     A  +     F +    K    SV+   Y   +       + +++ ++    
Sbjct: 602  DIEVIPLTGAATQHFLVLFKNGRTSKPAVPSVDDIDYPEIANDGRDIRIGQLEKELLQAR 661

Query: 245  EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
                   +  +     L  + +  L   E+  TIN    T K+   +           L 
Sbjct: 662  ADMLTITEEQEAVYEELQDANQELLSGSEEMQTINEELETSKEELQSTNEEINIVNNELV 721

Query: 305  HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG-NLFYANPSFLLLTKYKSVDDIEIA 363
             RN     A  D     T   ++    P  +      +  A   F    K    +  E  
Sbjct: 722  DRN-----AQLDSARTYTEGIINTIGDPLIILDKNLKVLKATSGFYAKFKVTEKET-EGK 775

Query: 364  GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
                       +     +   +L           A L          + +     EK N 
Sbjct: 776  YFYELGNQQWDIPALRELLEAILPEKKVVAEYEVAHLFP--NIGRKVMRLNARQLEKVNG 833

Query: 424  FPENMPQNGIEPEDVDTRINKRKME----IEVMQLCSILEATSDGIAIINR-EGIILSTN 478
                +       +          +E        +L   +EA   G    N   G ++  N
Sbjct: 834  EQMILLSIDDITDKRKVEDGLAAVEVLFKESKERLKLAVEAAGLGTWDYNPLTGELIWDN 893

Query: 479  RAVSKLFGYP-VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL-GSTKEE 536
            R   ++FG    + I    F   +  +    +   L + L         +      T  +
Sbjct: 894  R-CREMFGLVVADAISYDNFMTLIHPDDREGVQIALAQALKGKKNGEYNQEFRTAETHYK 952

Query: 537  KLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
            K+  L    K    +      +  T  DI+  K          +        K DF++  
Sbjct: 953  KIKWLSFKGKAYLNAEGVAYRFVGTSLDITVQK-------IHDEATVALLKQKDDFMSIA 1005

Query: 593  SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
            SHE++TP+T +    + + ++              +  ++S + V +++ DLL++SK+  
Sbjct: 1006 SHELKTPITTLKASLQ-LLDKMKDNPSPKMLPVLIDAANKSMDKVNNLIMDLLNVSKLNQ 1064

Query: 653  GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712
            G+++L+     +   V E    V+       +    +  +    + AD   ++QI +N +
Sbjct: 1065 GQLHLNKTKFVIATLVDECCQHVRAE----GLYKVMTAGDRTLEVFADEDRIEQILINFV 1120

Query: 713  SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
            +NAI + P   +I+IS     +  V + V D G G++   L    + + ++ +S   +  
Sbjct: 1121 NNAIKYAPDSKEIVISIEKIKSG-VKVSVTDKGPGISADMLPHLFERYYRVNSSGS-QYS 1178

Query: 773  GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            G GLGL ++  ++  + GK  + S   KG+      PL
Sbjct: 1179 GLGLGLYISSEIIKKHDGKIGVDSEIGKGSSFWFTLPL 1216


>gi|291454514|ref|ZP_06593904.1| two-component system sensor kinase [Streptomyces albus J1074]
 gi|291357463|gb|EFE84365.1| two-component system sensor kinase [Streptomyces albus J1074]
          Length = 1827

 Score =  273 bits (698), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 103/657 (15%), Positives = 221/657 (33%), Gaps = 51/657 (7%)

Query: 186  VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE 245
                  D  A G+ L+   + ++ +    SS  ++   +  +      L  + +V  +  
Sbjct: 979  DLTKKIDIDARGEILE-LKTTINTMVDQLSSFAEQVTRVAREVGTEGQLGGQARVRDVDG 1037

Query: 246  YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSH 305
             +    + +      L     +           +L         G +Q         +++
Sbjct: 1038 TWRDLTESVNEMAQNLTRQVRAIAAVATAVTRGDLQLKIDVDAAGEIQALQDNINTMITN 1097

Query: 306  RNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGG 365
                +L+    +        +                 A+     LT   S      A  
Sbjct: 1098 LRDTTLANKEQDWLKGNLARISGLMQG----RRDLTDVASLIMSELTPVVSAQ--HGAFF 1151

Query: 366  LSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFP 425
            ++   +        A +     R   +   +   + T     E+ +              
Sbjct: 1152 IAAPTEEDPDLSAEARENAYELRMIGSYGYSMGSMPTAFKPGESLIGAAAQEKRTILVDH 1211

Query: 426  ENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF 485
                   I     +       +      L  + E T  G+  +          R      
Sbjct: 1212 VPSGYLKIASGLGEAPPAHVIV------LPLLFEGTVLGVIELAAFQQFTHIQRDFLSQL 1265

Query: 486  GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
                 +++               +     E+      ++ E             +L+   
Sbjct: 1266 ----AEMIATSVNTISVNTKTEELLKQSQELTEQLRDRSEELEVRQK-------ALQASN 1314

Query: 546  KKLPFSSCYSLT-MHDI----SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPL 600
             +L   +        DI    +E +  +  L    +       +KS+FLA +SHE+RTPL
Sbjct: 1315 AELEDKAELLARQNRDIEVKNTEIEDARQVLEERAEQLAVSMRYKSEFLANMSHELRTPL 1374

Query: 601  TAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFE 660
             +++  ++++ +   G L  P+ +E+A  I  +G+ +L ++ND+LD+SK+E+GKM++   
Sbjct: 1375 NSLLILAKLLADNAEGNLS-PKQVEFAETIHGAGSDLLQLINDILDLSKVEAGKMDVSPT 1433

Query: 661  PVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFT 719
             ++L + V    +  +    EK +      +  +P  +  D + + Q+  N+LSNA+ FT
Sbjct: 1434 RIALVQLVDYVEATFRPLTAEKGLDFSVRVSPELPATLHTDEQRLLQVLRNLLSNAVKFT 1493

Query: 720  PSGGQIII--------------------STTHTSNEEVILRVRDTGVGMTNYELEKAMKP 759
             SG   ++                    S      + +   V DTG+G+ + ++    + 
Sbjct: 1494 DSGAVELVIRPAAADVPDAIREQLLEAGSLADADADLIAFSVTDTGIGIASGKMRVIFEA 1553

Query: 760  FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
            F Q   +   +  GTGLGL +++ +     G+ +  S P +G+   +  PL+    P
Sbjct: 1554 FKQADGTTSRKYGGTGLGLSISREIARLLGGEIHAASEPGRGSTFTLYLPLHPAELP 1610


>gi|126732976|ref|ZP_01748737.1| cytoplasmic sensor hybrid histidine kinase [Sagittula stellata
           E-37]
 gi|126706593|gb|EBA05669.1| cytoplasmic sensor hybrid histidine kinase [Sagittula stellata
           E-37]
          Length = 740

 Score =  273 bits (698), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 86/259 (33%), Positives = 135/259 (52%), Gaps = 6/259 (2%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           + K+    L HA+K AE+    KS FLA +SHEIRTP+  II  SE+++        NP 
Sbjct: 199 QLKKTAAGLDHARKRAEEAERIKSAFLANMSHEIRTPMNGIIAMSELLEQGTL----NPE 254

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                + I  S   +L I+ND+LD SKIE+GKM +H EP      V E  +L    A  K
Sbjct: 255 QRSMTSTISSSAVALLAIINDILDFSKIEAGKMLVHAEPFDPINLVEEVATLFSPAAAAK 314

Query: 683 RILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRV 741
            + I       +P  ++ D   ++Q  LN++ NA+ FT +G  + I    + + +++++V
Sbjct: 315 GVEICVESVLEMPLMVMGDSARLRQCLLNVIGNAVKFTATG-NVHIWLNRSEDGQIVVKV 373

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            DTGVG+   +L+   + F QI ++   R +GTGLGL ++  ++    G     S P +G
Sbjct: 374 TDTGVGIAEDKLDHIFEEFSQIDSTHTRRYDGTGLGLAISLRLIRLMGGSLSARSRPDEG 433

Query: 802 TLIEIIFPLYDTSHPHDCI 820
           ++ E+  P   T  P   I
Sbjct: 434 SVFEMRLPFPATETPPGTI 452


>gi|76808641|ref|YP_333029.1| phosphate regulon sensor protein phoR [Burkholderia pseudomallei
           1710b]
 gi|126452317|ref|YP_001065794.1| phosphate regulon sensor protein PhoR [Burkholderia pseudomallei
           1106a]
 gi|167823665|ref|ZP_02455136.1| histidine protein kinase PhoR [Burkholderia pseudomallei 9]
 gi|226196188|ref|ZP_03791773.1| phosphate regulon sensor kinase PhoR [Burkholderia pseudomallei
           Pakistan 9]
 gi|242317912|ref|ZP_04816928.1| phosphate regulon sensor kinase PhoR [Burkholderia pseudomallei
           1106b]
 gi|254258380|ref|ZP_04949434.1| phosphate regulon sensor protein PhoR [Burkholderia pseudomallei
           1710a]
 gi|254298029|ref|ZP_04965482.1| phosphate regulon sensor protein PhoR [Burkholderia pseudomallei
           406e]
 gi|76578094|gb|ABA47569.1| phosphate regulon sensor protein phoR [Burkholderia pseudomallei
           1710b]
 gi|126225959|gb|ABN89499.1| phosphate regulon sensor kinase PhoR [Burkholderia pseudomallei
           1106a]
 gi|157807570|gb|EDO84740.1| phosphate regulon sensor protein PhoR [Burkholderia pseudomallei
           406e]
 gi|225931774|gb|EEH27776.1| phosphate regulon sensor kinase PhoR [Burkholderia pseudomallei
           Pakistan 9]
 gi|242141151|gb|EES27553.1| phosphate regulon sensor kinase PhoR [Burkholderia pseudomallei
           1106b]
 gi|254217069|gb|EET06453.1| phosphate regulon sensor protein PhoR [Burkholderia pseudomallei
           1710a]
          Length = 436

 Score =  273 bits (698), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 76/411 (18%), Positives = 151/411 (36%), Gaps = 35/411 (8%)

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT-----RINKRKMEIEVMQLCSILEATS 462
                   +      + P      G     +           R++E +  +    ++A+ 
Sbjct: 49  HTQRLWRLLDAPVYGEVPSAPGIWGEIYYRLHKLAKQWHAQVRQVEQQHSRFIQAIQASP 108

Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522
           +G+A+++    I   N      FG   +  LR+  T  +         +           
Sbjct: 109 NGVAMLDDRDQIEWCNAIAEVHFGLDAKRDLRQHVTHLVRHPDFVRYLN----------G 158

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES 582
           Q  ++  +         ++  +       +   L   DI+E ++                
Sbjct: 159 QHYDETLVMRGMGGNRQNVLAVQVFPYGENRKLLLTQDITELERT--------------D 204

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
           + + DF+A VSHE++TPLT + GF E ++     PL +     Y   +++  + +  IV 
Sbjct: 205 AMRRDFVANVSHELKTPLTVLSGFLETMRE---LPLSDDERARYLELMEQQASRMRHIVT 261

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702
           DLL ++K+E          V +   +       Q  +      I       +  +     
Sbjct: 262 DLLVLAKLEGESKPPADRAVDMRTVLDHLRDDAQTLSGGHH-EITFKVDETL-AVTGAQT 319

Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
            +     N+++NAI +TP GG I +        + +  V D+G+G+   EL +  + F +
Sbjct: 320 EIFSALGNLVTNAIRYTPEGGTIRVEWR-RDGAQAVFSVADSGLGIPAAELPRLTERFYR 378

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
           +  S+     GTGLGL + K ++  +  +  I S   +G+     FP + T
Sbjct: 379 VDRSRSRDTGGTGLGLAIVKHVLQRHDAQLSIQSEEGRGSTFTARFPAHRT 429


>gi|320161666|ref|YP_004174891.1| two-component sensor histidine kinase [Anaerolinea thermophila
           UNI-1]
 gi|319995520|dbj|BAJ64291.1| two-component sensor histidine kinase [Anaerolinea thermophila
           UNI-1]
          Length = 478

 Score =  273 bits (698), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 66/253 (26%), Positives = 129/253 (50%), Gaps = 5/253 (1%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E ++  + L+   +  +     + DF+A VSH+++TPLTAI GF++ I +          
Sbjct: 219 EVRELAHSLNEMMRKVQAGQRAQRDFIANVSHDLKTPLTAIQGFAQAILDG--TAQSPET 276

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
               A  I    + +  +V DLL +++ ++G  +L FE V   + + E +      A + 
Sbjct: 277 LRNAATVIYNEASRMYRLVLDLLTLARFDAGTADLVFEKVDPQDLLRETVRRFSPLAQKA 336

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
            +++R     ++P + AD   + Q   N++ NA+ +TP+GG I++         ++L V+
Sbjct: 337 GVILRLE-DASLPVLFADGERLMQALANLMDNALKYTPAGGTIVLRGKVEE-GHLLLEVQ 394

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGE-GTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
           DTG G++  E  +  + F +   S+   GE  +GLGLP+ + ++ A+ G+  ++S   KG
Sbjct: 395 DTGKGISPEEQTRIFERFYRGNPSRSQDGEQSSGLGLPIVREILRAHGGEVRLYSEVGKG 454

Query: 802 TLIEIIFPLYDTS 814
           +   ++ PL  + 
Sbjct: 455 SCFTLVLPLQGSE 467


>gi|121593072|ref|YP_984968.1| multi-sensor hybrid histidine kinase [Acidovorax sp. JS42]
 gi|120605152|gb|ABM40892.1| multi-sensor hybrid histidine kinase [Acidovorax sp. JS42]
          Length = 1137

 Score =  273 bits (698), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 98/639 (15%), Positives = 215/639 (33%), Gaps = 61/639 (9%)

Query: 186 VNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTE 245
           + R     +    +L    +          ++++E     + ++     +   + +    
Sbjct: 93  MTRGSLLEQQRFDQLQGLATKRMTELAHIVALQREGRREEALEAMRGDGQATMETTRTLV 152

Query: 246 YYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEY--- 302
                 +  + +    +     ++     + +  +                +        
Sbjct: 153 REMLNTEQQQLQAQREVWEGAFAISAYLTWGSAAVLLLLTCASAVMTMAEYRSREVENWI 212

Query: 303 --------LSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFY--ANPSFLLLT 352
                      +    +              +D      +V     +F      +    T
Sbjct: 213 KGNLVGLGTRLQGEQRIHDMAGAVIGYLATELDARVGAIYVTQGHGIFERMGGYALAPDT 272

Query: 353 KYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA 412
              +V   E   G +      +   +     + +         A   +  I  N      
Sbjct: 273 GPGAVRAGEGLLGQALQSRTLQHVRHVPSGYLPVTSGTGQATPAELVMMPIVLNG----- 327

Query: 413 MTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREG 472
           +     E          +        +      +  ++  +L S+L+ T           
Sbjct: 328 VALAVVEMGWFRAVAPHEVDFLVRAGEQLAQAVRGALDRSRLESLLDET----------- 376

Query: 473 IILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
                            E++  +   + +        +  L E  +L   Q  E      
Sbjct: 377 -------------QRQAEELQAQQEELRVNNEELEQQSRMLQESQNLMQAQQAELE---- 419

Query: 533 TKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
                   L    ++L +     LT  D  E K          +   + S +KS+FLA +
Sbjct: 420 ---HSNAQLEAQTEQLQYQKQRLLTAQDALEAKA---------RDLAQASQYKSEFLANM 467

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHE+RTPL + +  ++++ + +   L   +   YA  I  +G  +L+++ND+LD++KIE+
Sbjct: 468 SHELRTPLNSSLILAKLLADNKQQNLTAEQVR-YAQTIHNAGTDLLNLINDILDLAKIEA 526

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNI 711
           G+ ++   PV++ + V+  +  ++  A +K +         +P  I +D + + QI  N+
Sbjct: 527 GQTSVEIGPVTVAKVVAGVMEPLRAQAQDKGLQFNAVVEPGVPAFITSDAQRLAQILKNL 586

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           LSNA+ FT  G ++ +      N+ +   VRDTG+G+     E+    F Q   S   + 
Sbjct: 587 LSNALKFTARG-EVTMRVFAGDNDTLCFAVRDTGIGIAPDLQERIFDAFHQADGSTHRKY 645

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            GTGLGL +++ +     G   + S P +G++  +  P+
Sbjct: 646 GGTGLGLSISRDLAQLLGGSIAVQSAPGEGSVFTLTLPV 684


>gi|282895906|ref|ZP_06303946.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Raphidiopsis brookii D9]
 gi|281199151|gb|EFA74020.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Raphidiopsis brookii D9]
          Length = 428

 Score =  273 bits (698), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 72/253 (28%), Positives = 130/253 (51%), Gaps = 2/253 (0%)

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            + +  E ++++ ++        + S  KS FL+ +SHE+RTP+ AIIGF++++   +F 
Sbjct: 145 LIRNNEELERQRQQIQLQNLKLLEVSRLKSQFLSTISHELRTPMNAIIGFAQILLRPKFS 204

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
            L +    +    I  +   +  ++N++LD SKI+SG++ L  E   L + V+ A+S ++
Sbjct: 205 QLSS-VQTDILKRILNNAKNLSMLLNEVLDFSKIDSGRLALKPEIFDLSKVVNHAVSEIR 263

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
                K++ +          +  D   V QI +N+LSNAI FT  G  I +  T  S   
Sbjct: 264 SLVEAKKLSLSVEIELENTLVFNDPMRVSQILINLLSNAIKFTERG-CIWVRVTEPSKNR 322

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           + + +RDTG+G+++ + E   + F Q+      +  G GLGL +  ++V    GK  + S
Sbjct: 323 IAISIRDTGIGISSQDCEHIFEAFRQVDQGISRKYPGMGLGLAIIDSLVKIMGGKIILES 382

Query: 797 TPAKGTLIEIIFP 809
             A G+L  +  P
Sbjct: 383 QLAVGSLFGVELP 395


>gi|269793330|ref|YP_003318234.1| PAS/PAC sensor signal transduction histidine kinase
           [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269100965|gb|ACZ19952.1| PAS/PAC sensor signal transduction histidine kinase
           [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 673

 Score =  273 bits (698), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 97/395 (24%), Positives = 177/395 (44%), Gaps = 28/395 (7%)

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE---GIILSTNRAVSKLFGYP 488
            I    ++ + +  + E    +L   +E+T  G+A+ +     G     N    ++FGY 
Sbjct: 213 VIRELLLEIKRDLARAEESEERLRLAVEST--GLALWDVNFVTGNWT-VNGQYREIFGYG 269

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
           +E    + +   +       +     + L+  L    E      +     L +    +  
Sbjct: 270 LE--GGEDWLDTVHPEDRERVQLAWEDHLA-GLTDRYEAEFRKRSAFGDYLWVSDHGRVY 326

Query: 549 PFSSC-----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAI 603
              S         T+ D++  K  +  L  AK+ A+ ES  +S  ++RVSHEIRTPL +I
Sbjct: 327 SRDSRGGPLRAVGTLKDVTSRKMVEEMLRSAKEQAQAESQARSRLMSRVSHEIRTPLNSI 386

Query: 604 IGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVS 663
           +G+ +++K +           E+ + I RSG  +L +V +++D+S IE+GK+ +  +  +
Sbjct: 387 MGYLDLLKERGPSLNLPQDASEWLDTIQRSGYHLLSVVEEIMDMSTIEAGKLKVREDRFN 446

Query: 664 LDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSG 722
           L + VSE   L+ L A  K + +R  +  ++P ++  D   VKQ+ +N+L NAI FT  G
Sbjct: 447 LRDLVSEVEHLMSLGAQRKGLDLRVRYLKSVPDQVTTDRGKVKQVLINLLGNAIKFTDEG 506

Query: 723 G---QIIISTTH----TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
               +I + +       S+  V  RVRD+G G+         +PF +   S+     G G
Sbjct: 507 TVTMEIWVESVRDMGARSHATVCFRVRDSGPGVDPSIRRSLFQPFEK-HGSR----GGAG 561

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           LGL ++ +  +A  G   +      G    +  P+
Sbjct: 562 LGLAISHSFAEALGGSLELE-EVESGASFVLKVPV 595


>gi|238786285|ref|ZP_04630227.1| Signal transduction histidine-protein kinase barA [Yersinia
           bercovieri ATCC 43970]
 gi|238712808|gb|EEQ04878.1| Signal transduction histidine-protein kinase barA [Yersinia
           bercovieri ATCC 43970]
          Length = 911

 Score =  273 bits (698), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 87/335 (25%), Positives = 150/335 (44%), Gaps = 17/335 (5%)

Query: 484 LFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRI 543
           LF Y +   +  P    +       ++      L   +   +             +++ +
Sbjct: 183 LFAYRLMRDVTGPIRNMVN-----AVDRIRRGQLDSRVEGHMLGELNILKNGINSMAMSL 237

Query: 544 IIKKLPFSSCYSLTMHDISEWKQEKN----KLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
                           D+ E  ++      +L  A K A++ +  KS+FLA +SHE+RTP
Sbjct: 238 AAYHEEMQQNIDQATSDLRETLEQMEIQNVELGLANKRAQEAARIKSEFLANMSHELRTP 297

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           L  +IGF+     Q       P   +Y   I RS N +L I+ND+LD SK+E+ K+ L  
Sbjct: 298 LNGVIGFT----RQTLKTSLTPTQTDYLQTIQRSANNLLCIINDVLDFSKLEAEKLILEH 353

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHF 718
            P SL   + E I L+   A+EK + +     N++P  ++ D   ++QI  N+L NAI F
Sbjct: 354 IPFSLRSTLDEVIILLAHTAHEKGLELTLHINNDVPEQVVGDAMRLQQIVTNLLGNAIKF 413

Query: 719 TPSGGQ-IIISTTHTSNEEV--ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTG 775
           T  G   I+++    + + V  ++ ++DTG+G++  +  +  + F Q   S   R  GTG
Sbjct: 414 TEQGNIDILVTAQVLTAQRVTLVVEIQDTGIGISESQQAQLFQAFRQADASISRRHGGTG 473

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           LGL + + +V    G     S   +G+  +    L
Sbjct: 474 LGLVITERLVKEMGGDISFLSQVDRGSTFKFHLTL 508


>gi|150007677|ref|YP_001302420.1| putative two-component system sensor histidine kinase
           [Parabacteroides distasonis ATCC 8503]
 gi|256839938|ref|ZP_05545447.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|149936101|gb|ABR42798.1| putative two-component system sensor histidine kinase
           [Parabacteroides distasonis ATCC 8503]
 gi|256738868|gb|EEU52193.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 364

 Score =  273 bits (698), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 95/346 (27%), Positives = 159/346 (45%), Gaps = 27/346 (7%)

Query: 481 VSKLFGYPVEDILRKPFTVFL------EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
             + +   + ++   P +  +      +      +   L+ ++        ++       
Sbjct: 36  AMEQWYLNMGEVPGTPLSQIVGIYSNVKPEDRECLKTSLSRLV-HGETDHDQREARVKDG 94

Query: 535 EE-KLLSLRIIIKKLPFSSCYSLTMH-DISEWKQEKNKLSHAKKIAEKESSHKSDFLARV 592
           E  K + L I+   L  SS   L M+ DISE K  + ++      AEK    KS FLA +
Sbjct: 95  EGWKWIRLDIMEAGLEKSSPILLLMNYDISELKAMEERML----KAEKSERLKSSFLANI 150

Query: 593 SHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIES 652
           SHEIR PL AI+GFS ++ ++  G L      EY N I  +  L+L IVND+LD++K+ES
Sbjct: 151 SHEIRMPLNAIVGFSSLLGDEEDGEL----RQEYINLIQTNNELLLGIVNDVLDLAKLES 206

Query: 653 GKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNIL 712
           G M   F    L + + E ++  Q+      + +    + +   + +D   +KQ+  N +
Sbjct: 207 GTMTFDFMEFDLRQLIVETVASFQIKVPR-GVALTYPASLDSFLLRSDRIRLKQVLGNFI 265

Query: 713 SNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           +NAI +T  G  II+S     N EV+L V DTG GM+          F +  N    + +
Sbjct: 266 TNAIKYTSIGS-IILSYQAMEN-EVLLSVTDTGEGMSEEIKLHVFDRFYKGRN----QKQ 319

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHD 818
           G GLGL + + +++   G+  + S   KG+      P++    P D
Sbjct: 320 GIGLGLSICQNIIERLGGRIGVSSEQGKGSCFWCTLPIFP---PKD 362


>gi|150025527|ref|YP_001296353.1| two-component system sensor histidine kinase [Flavobacterium
           psychrophilum JIP02/86]
 gi|149772068|emb|CAL43544.1| Probable two-component system sensor histidine kinase
           [Flavobacterium psychrophilum JIP02/86]
          Length = 729

 Score =  273 bits (698), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 74/250 (29%), Positives = 126/250 (50%), Gaps = 10/250 (4%)

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            + + N+L  AK+  EK S  +++FL+ VSHE+RTPL AI G S ++ +        PR 
Sbjct: 338 LRDKNNELEIAKERIEKASKARAEFLSTVSHELRTPLNAINGISHILLDDN----PKPRQ 393

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
           IEY   +  SGN +L  +N++L+I++IES  + +     +L E ++   + ++  A +  
Sbjct: 394 IEYLKSLKFSGNHLLTYINEILEINRIESDNIEIENISFNLKELLNNIQNSLKEQARQNN 453

Query: 684 ILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VI 738
                +  N+ P IL  D   + QI +N++SNA+ FT   G II++    + ++    V 
Sbjct: 454 NHFILTIDNDAPEILIGDPTKLSQIFINLISNALKFT-ENGNIIVNARVVNRDDTSCLVK 512

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
             V+D G+G+   + E   + F Q       +  GTGLGL + K ++    GK  + S  
Sbjct: 513 FEVKDNGIGIPTDKQESIFESFSQGSVEINRKYGGTGLGLTIVKRLLALMNGKIEVHSQI 572

Query: 799 AKGTLIEIIF 808
             G+      
Sbjct: 573 GIGSTFTFNL 582


>gi|302537292|ref|ZP_07289634.1| sensory histidine kinase [Streptomyces sp. C]
 gi|302446187|gb|EFL18003.1| sensory histidine kinase [Streptomyces sp. C]
          Length = 1828

 Score =  273 bits (698), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 69/283 (24%), Positives = 137/283 (48%), Gaps = 26/283 (9%)

Query: 559  HDI----SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
             DI    +E ++ +  L    +       +KS+FLA +SHE+RTPL +++  ++++ +  
Sbjct: 1321 RDIEVKNTEIEEARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNA 1380

Query: 615  FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
               L  P+ +E+A  I  +G+ +L ++ND+LD+SK+E+GKM++    ++L + V    + 
Sbjct: 1381 DENLS-PKQVEFAETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVDYVEAT 1439

Query: 675  VQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIII------ 727
             +    EK +      +  +P  +  D + + Q+  N+LSNA+ FT +G   ++      
Sbjct: 1440 FRPLTAEKGLDFSVRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDNGAVELVIRPAGA 1499

Query: 728  --------------STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
                          S      + +   V DTG+G+   ++    + F Q   +   +  G
Sbjct: 1500 DVPTAIREQLLEAGSLRDADADLIAFSVTDTGIGIAASKMLVIFEAFKQADGTTSRKYGG 1559

Query: 774  TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHP 816
            TGLGL +++ +     G+ +  S P +G+   +  PL+ +  P
Sbjct: 1560 TGLGLSISREIARLLGGEIHAASEPGRGSTFTLYLPLHPSELP 1602


>gi|300771326|ref|ZP_07081202.1| two component system sensor histidine kinase [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300761996|gb|EFK58816.1| two component system sensor histidine kinase [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 574

 Score =  273 bits (698), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 76/392 (19%), Positives = 167/392 (42%), Gaps = 29/392 (7%)

Query: 429 PQNGIEPEDVDTRINK------RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
            +       +  ++ +        +  E  ++ +++    D +  I+ +  IL  N    
Sbjct: 200 GELARSFNTMAQKLEEYSNSKLATILKEKTRIETLINNMHDPVIGIDEQKKILFANHEAL 259

Query: 483 KLFGYPVEDILRKPFTVFLEQNT--PSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLS 540
           K+ G     I  +        N     ++   +           +         E++++ 
Sbjct: 260 KVTGLEWTAIQGRQIQDIAVSNDLVRLLIRDMMNPGQGSAEPVKIAADGKQQYFEKEIID 319

Query: 541 LRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRT 598
           + ++      S    Y + + +I+ +K+                  K++F+A VSHE++T
Sbjct: 320 INVVPTGEQNSELIGYVIMLKNITPFKELDF--------------AKTNFIATVSHELKT 365

Query: 599 PLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLH 658
           P+++I     ++ ++R G L N +  +    I      +L I ++LL++S++E+G + L+
Sbjct: 366 PISSIKMSLNILAHERTGTLTNEQQ-QLLESIGDDSERLLKITSELLNMSQVETGNIQLN 424

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718
            +     E +  A+   ++ A +K + I      ++P I  D      +  N ++NAI +
Sbjct: 425 MQANDPVEILKYAVDTTRIPAEQKGLSIIQQVQPDLPFIQVDAEKTAWVLTNFITNAIRY 484

Query: 719 TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
           +    +II+S  +   + ++  V+D G G+ +   E+  + + QIP S +    GTGLGL
Sbjct: 485 SSDHNEIIVSL-YKEQDRLVFAVQDFGRGIDSRYQERIFERYFQIPGSAKS---GTGLGL 540

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            ++K  ++   GK  + S P  G+     FP+
Sbjct: 541 AISKDFIENQSGKIGVESKPGLGSTFYFSFPV 572


>gi|253701021|ref|YP_003022210.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           M21]
 gi|251775871|gb|ACT18452.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           M21]
          Length = 713

 Score =  273 bits (698), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 100/646 (15%), Positives = 204/646 (31%), Gaps = 81/646 (12%)

Query: 238 NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297
           ++              +  ++    + +E  L  +    T+   +         +++   
Sbjct: 72  DRRRPTLADIVLDGAPISHDRCTKSSFDEDGLQCEGWLRTVRGRRRYLHFEAVPVRDGKG 131

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPE----TVDKCPIPFFV--YSHGNLFYANPSFLLL 351
           E    +   +  +     +E    + E         P   F+   S G     N +F  +
Sbjct: 132 EVIAVVETLHDLTERENSEEAMAKSEEKFSKAFQASPDGMFINTQSEGLFIDVNDAFAQM 191

Query: 352 TKYKSVDDIEIAGGLSTLLDAPKLS----------DNNAIKPVMLYRSDRTCIAASARLH 401
             Y   + I  +     L   P+                   V +               
Sbjct: 192 LGYGRDEIIGHSSLELDLWPDPRQRALIVEQALHKGAVRNVEVSIRVKSGLIRTFLWSSD 251

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINK--RKMEIEVMQLCSILE 459
            I+    + L           +    +     E  +    +++  R +E    +  + ++
Sbjct: 252 VIRLKERDCLIGNVRDITGQKENERQLTNKNAELSNKHEELSRLFRLVESAKKEWENTMD 311

Query: 460 ATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSL 519
             SD I ++   G +   NRA  +  G P   I+ + +   L      ++   ++ +   
Sbjct: 312 CISDMIILLGPNGKVKRCNRAAMEFVGIPYGKIMGRDWLQLL--EQAGILLAPISAV--- 366

Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579
             +            +  L+      K    SS   L++ DI+E K+   +L HA    +
Sbjct: 367 --QSVCCYEVHVEASDTWLVVTLYPDKAGEDSSGTVLSIRDITEDKRAAIELYHAYTDLK 424

Query: 580 KESSHK---------SDFLARVSHEIRTPLTAIIGFSEVIKN------------------ 612
           +  +               A V+HEI  P   II     +                    
Sbjct: 425 EAHNQMVQQEKMASLGQLAAGVAHEINNPTGYIISNLGTLDRYQARLAEFINSQNEIISD 484

Query: 613 ---QRFGPLGNPRYIEYANYI-----------DRSGNLVLDIVNDLLDISKIESGKMNLH 658
              +    L   R     ++I                 +  IV  L   S+    K +  
Sbjct: 485 LVPEELERLTAIRKRMKIDHIVGDIPALVSESIDGAKRIQKIVQALKGFSR----KDDDE 540

Query: 659 FEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHF 718
               ++ E +  +I+++          +R  F   +P +    + + Q+ +N++ NA H 
Sbjct: 541 CTTANIAECLESSINIIWNEIKYH-ATLRKEF-GAVPPLRCYPQKLSQVFMNLIMNAAHS 598

Query: 719 TPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
               G+I +ST    N+   + V DTG G+      +  +PF          G+GTGLGL
Sbjct: 599 LGEKGEITVSTWLK-NDAAYISVADTGSGIPEEIRSRIFEPFFTTK----EVGKGTGLGL 653

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL----YDTSHPHDCI 820
            +++ +V  + G+  + S   KGT   ++ P+     +    H CI
Sbjct: 654 SISREIVREHGGEMTVESNIGKGTTFTVMLPMNVAKEERDEAHLCI 699



 Score = 44.6 bits (104), Expect = 0.067,   Method: Composition-based stats.
 Identities = 18/150 (12%), Positives = 45/150 (30%), Gaps = 15/150 (10%)

Query: 54  FTDQNQESVSNTNYLDSENTFVFDPIPRTVR---FTWNIDAHGYLKEISEELPKTIGNYA 110
            T  +     N+    +++   F    +      F  N  + G   ++++   + +G   
Sbjct: 138 ETLHDLTERENSEEAMAKSEEKFSKAFQASPDGMFI-NTQSEGLFIDVNDAFAQMLGYGR 196

Query: 111 FKMIGMRLCDVSDILHIDPNNH---IGDLLKRQNTWYGKTTLWPIEGTNLYVPIDLAALP 167
            ++IG    ++   L  DP      +   L +            ++ + L      ++  
Sbjct: 197 DEIIGHSSLEL--DLWPDPRQRALIVEQALHKGA-VRNVEVSIRVK-SGLIRTFLWSSDV 252

Query: 168 IYSRNREFSGFRGFGIVHVNRVDNDPRALG 197
           I  + R+       G V       +     
Sbjct: 253 IRLKERDCL----IGNVRDITGQKENERQL 278



 Score = 39.2 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 33/412 (8%), Positives = 97/412 (23%), Gaps = 53/412 (12%)

Query: 92  HGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL-- 149
              +   ++      G  A  +IG          +      + D++              
Sbjct: 39  DHKVLMWNKACEVLTGIRAADVIGS--DQHWKGFYDRRRPTLADIVLDGAPISHDRCTKS 96

Query: 150 -----------WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
                      W          +   A+P+     E         +H      +      
Sbjct: 97  SFDEDGLQCEGWLRTVRGRRRYLHFEAVPVRDGKGEVIAV--VETLHDLTERENSEEAMA 154

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIF-----SQQSPPPHLRMKNKVSSLTEYYAHKDDV 253
           + ++KFS   +       +  +   +F     +      + R +    S  E     D  
Sbjct: 155 KSEEKFSKAFQASPDGMFINTQSEGLFIDVNDAFAQMLGYGRDEIIGHSSLELDLWPDPR 214

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQ------------YFGTLQNNSKESFE 301
            +         + +    +      +    T                 G +++ + +   
Sbjct: 215 QRALIVEQALHKGAVRNVEVSIRVKSGLIRTFLWSSDVIRLKERDCLIGNVRDITGQKEN 274

Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKC------------PIPFFVYSHGNLFYANPSFL 349
                N  +  +   E  +     V+               +   +  +G +   N + +
Sbjct: 275 ERQLTNKNAELSNKHEELSRLFRLVESAKKEWENTMDCISDMIILLGPNGKVKRCNRAAM 334

Query: 350 LLTKYK-----SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQ 404
                        D +++      LL       +     V +  SD              
Sbjct: 335 EFVGIPYGKIMGRDWLQLLEQAGILLAPISAVQSVCCYEVHVEASD--TWLVVTLYPDKA 392

Query: 405 WNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
               +   ++     +  +    +     + ++   ++ +++    + QL +
Sbjct: 393 GEDSSGTVLSIRDITEDKRAAIELYHAYTDLKEAHNQMVQQEKMASLGQLAA 444


>gi|119714461|ref|YP_921426.1| ATPase domain-containing protein [Nocardioides sp. JS614]
 gi|119535122|gb|ABL79739.1| ATP-binding region, ATPase domain protein [Nocardioides sp. JS614]
          Length = 549

 Score =  273 bits (698), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 91/566 (16%), Positives = 188/566 (33%), Gaps = 29/566 (5%)

Query: 255 KTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAY 314
                  L        + +                   +     S +        +L+  
Sbjct: 4   SERLRRALRPFAWVDGDPDPRGLQAGFVLLVVLDRLLRRAAGVPSGDGNWPLRGAALALL 63

Query: 315 FDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPK 374
                 + P +  + P+   +           S        S+  +  A  L   L   +
Sbjct: 64  ILLVVMVLPRSWRRTPVIAALAVADLGVVGVSSLGPQDGGTSLLVVLPALWLGNRL---R 120

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIE 434
           +          L       +A                    +         +        
Sbjct: 121 MPGALITVAGSLLLITLPSLAVHGLEGEGLSRAVPMPIAAGLVALALAAGLDLAELARRR 180

Query: 435 PEDVDTRINK--RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP-VED 491
            E+ + R+ +    +E E      + +    G+ +++  G ++  NR   +       +D
Sbjct: 181 AEEGEQRLQRTLETLEAERQTSQEVFDGADVGLMLLDERGRLVGMNRRYEEFIRLSLPDD 240

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII----IKK 547
            L  P   F    T  +    L    +    +  +             ++ +     +  
Sbjct: 241 DLPWPGNTFAADGTTRLTADQLPSARAARGEEFEDYRMWSGADPATRRAVSVSGRRSVSP 300

Query: 548 LPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
                   +   DI+E                +  + K +F+A VSHE+RTPLT+I+G+ 
Sbjct: 301 AGNVVGAVVAATDITE--------------LMRALAVKEEFVATVSHELRTPLTSIVGYV 346

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
            ++         + + +     +DR+   +  +V  LL  +    G + L  E V L   
Sbjct: 347 AILLEDD---TLSAQAVAQLRVVDRNAARLTALVEALLQEAHHADGPVPLEREEVDLARI 403

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII 727
              ++      A  + + I      +   ++AD + + Q+  N++SNAI +TP GG+  +
Sbjct: 404 ARASVDAAAPTALAEGVEIECDL-RDPVLVVADPQLLAQVVDNLVSNAIKYTPRGGRARV 462

Query: 728 STTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDA 787
           S      E V L V D G+G++  E  +    F +   + +   +G GLGL +AKA+V++
Sbjct: 463 S-ARRDGERVELTVADNGIGISEAERGQLFTRFFRTRAATESAIQGVGLGLSIAKAIVES 521

Query: 788 NMGKFYIFSTPAKGTLIEIIFPLYDT 813
           + G+  + S   +G++  +  P+ D 
Sbjct: 522 HGGQIEVDSEAGRGSVFRVWLPVGDV 547


>gi|134282705|ref|ZP_01769408.1| phosphate regulon sensor kinase PhoR [Burkholderia pseudomallei
           305]
 gi|167738072|ref|ZP_02410846.1| histidine protein kinase PhoR [Burkholderia pseudomallei 14]
 gi|167845209|ref|ZP_02470717.1| histidine protein kinase PhoR [Burkholderia pseudomallei B7210]
 gi|254197643|ref|ZP_04904065.1| phosphate regulon sensor protein PhoR [Burkholderia pseudomallei
           S13]
 gi|134245791|gb|EBA45882.1| phosphate regulon sensor kinase PhoR [Burkholderia pseudomallei
           305]
 gi|169654384|gb|EDS87077.1| phosphate regulon sensor protein PhoR [Burkholderia pseudomallei
           S13]
          Length = 436

 Score =  273 bits (698), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 76/411 (18%), Positives = 151/411 (36%), Gaps = 35/411 (8%)

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT-----RINKRKMEIEVMQLCSILEATS 462
                   +      + P      G     +           R++E +  +    ++A+ 
Sbjct: 49  HTQRLWRLLDAPVYGEVPSAPGIWGEIYYRLHKLAKQWHAQVRQVEQQHSRFIQAIQASP 108

Query: 463 DGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLR 522
           +G+A+++    I   N      FG   +  LR+  T  +         +           
Sbjct: 109 NGVAMLDDRDQIEWCNAIAEVHFGLDAKRDLRQHVTHLVRHPDFVRYLN----------G 158

Query: 523 QTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKES 582
           Q  ++  +         ++  +       +   L   DI+E ++                
Sbjct: 159 QHYDETLVMRGMGGNRQNVLAVQVFPYGENRKLLLTQDITELERT--------------D 204

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
           + + DF+A VSHE++TPLT + GF E ++     PL +     Y   +++  + +  IV 
Sbjct: 205 AMRRDFVANVSHELKTPLTVLSGFLETMRE---LPLSDDERARYLELMEQQASRMRHIVT 261

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLR 702
           DLL ++K+E          V +   +       Q  +      I       +  +     
Sbjct: 262 DLLVLAKLEGESKPPADRAVDMRTVLDHLRDDAQTLSGGHH-EITFKVDETL-AVTGAQT 319

Query: 703 SVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQ 762
            +     N+++NAI +TP GG I +        + +  V D+G+G+   EL +  + F +
Sbjct: 320 EIFSALGNLVTNAIRYTPEGGTIRVEWR-RDGAQAVFSVADSGLGIPAAELPRLTERFYR 378

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDT 813
           +  S+     GTGLGL + K ++  +  +  I S   +G+     FP + T
Sbjct: 379 VDRSRSRDTGGTGLGLAIVKHVLQRHDAQLSIQSEEGRGSTFTARFPAHRT 429


>gi|163847332|ref|YP_001635376.1| ATPase domain-containing protein [Chloroflexus aurantiacus J-10-fl]
 gi|222525178|ref|YP_002569649.1| integral membrane sensor hybrid histidine kinase [Chloroflexus sp.
           Y-400-fl]
 gi|163668621|gb|ABY34987.1| ATP-binding region ATPase domain protein [Chloroflexus aurantiacus
           J-10-fl]
 gi|222449057|gb|ACM53323.1| integral membrane sensor hybrid histidine kinase [Chloroflexus sp.
           Y-400-fl]
          Length = 917

 Score =  273 bits (698), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 77/253 (30%), Positives = 129/253 (50%), Gaps = 5/253 (1%)

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           +I E ++ + +L  A+  AE  S  KS FLA +SHE+RTPLTAIIG+S+ +  Q      
Sbjct: 371 EIQERRRVEQELIKARDAAEAASRAKSTFLATMSHELRTPLTAIIGYSQ-LLEQLVSKGI 429

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
                     I  +G  +L ++ND+LDISKIE+G+M +  E   + + V  A++ +    
Sbjct: 430 YDTVAHDVGRIRAAGTHLLALINDILDISKIEAGRMTVSVEYADVADLVRSAVNTIIPQI 489

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH---TSNEE 736
            + R  +      +I  + +D   V+Q  +N+LSNA  FT  G ++ ++ +         
Sbjct: 490 EKNRNRLHVHCPPDIGILNSDATKVRQALINLLSNAAKFTEDG-EVTLTVSRYQKDHQTW 548

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
               V DTG+G+   + +K  K F Q+ +S   +  GTGLGL L++ + +   G+  + S
Sbjct: 549 FRFVVADTGIGIPADKHDKLFKAFSQVDDSPTRKYGGTGLGLALSQRLCELIGGRITMES 608

Query: 797 TPAKGTLIEIIFP 809
               G+   +  P
Sbjct: 609 AVGVGSTFTMEIP 621


>gi|295109067|emb|CBL23020.1| Signal transduction histidine kinase [Ruminococcus obeum A2-162]
          Length = 658

 Score =  273 bits (698), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 95/487 (19%), Positives = 190/487 (39%), Gaps = 30/487 (6%)

Query: 343 YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD-----NNAIKPVMLYRSDRTCIAAS 397
           YA+     L         E           P+        ++ +  V      R     S
Sbjct: 34  YADEVMDELLGIDRDITPEERFVFHRSRIHPEDMQLFQEYSDKLTEVRTEIVYRYIHPVS 93

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS- 456
             +  ++       ++T            +      + ++ + R+ +    +   +L   
Sbjct: 94  GEMF-VRCGGARDTSVTEYVAVTGIHQDISETVRIEKEKEAERRLAELNDSLRKEKLRQD 152

Query: 457 -----ILEATSDGIAIINREGI-ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV-- 508
                +L+  + G+      G  ++  N    +++G    +  ++     L Q       
Sbjct: 153 IYYKELLDIENCGVLAYTMPGHKVIHMNAEALRMYGIESVEAAQRELGPLLRQVYYPDSD 212

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLP-FSSCYSLTMHDISEWKQE 567
           + + L ++ + D     E I       E     +  +  +P        T  D+S+    
Sbjct: 213 VLNQLKKLRNEDDMVDYECIIGKGKANECHALAKSKVVHIPTGERAVLTTFVDVSDMVML 272

Query: 568 KNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYA 627
           KN L    + AE+ S  KS FL  +SH++RTP+ AIIG++E +    +G         Y 
Sbjct: 273 KNAL----RRAEEGSRAKSSFLFAMSHDLRTPMNAIIGYAE-LMEAHWGE--KEAATNYL 325

Query: 628 NYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS-LVQLYANEKRILI 686
             +  +   +L ++ ++L+I++IESGK  L+  P +L +   E +  L+    + K++ +
Sbjct: 326 QKLKGASQFLLALIGNVLEIARIESGKETLNEAPWNLMKL-EETLDILLDREISRKQLTV 384

Query: 687 RTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT-----HTSNEEVILRV 741
             +       +  D   +++I +N+LSNA+ +T  GG+I++              + +RV
Sbjct: 385 NRNVNIRHANVYCDALKIREIIMNLLSNAVKYTAEGGKIVLDIEEKPSVQDDFMTLQIRV 444

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            D G+G++   +      F +  +S +    GTGLGL + K+ VD   G   + S   KG
Sbjct: 445 SDNGIGISKEYIPHIFDAFTRERSSSESGIIGTGLGLHIVKSFVDLMNGDISVESESGKG 504

Query: 802 TLIEIIF 808
           T   +  
Sbjct: 505 TCFTVEI 511


>gi|253575383|ref|ZP_04852721.1| multi-component transcriptional regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251845380|gb|EES73390.1| multi-component transcriptional regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 469

 Score =  273 bits (698), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 72/224 (32%), Positives = 124/224 (55%), Gaps = 4/224 (1%)

Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
           + +F A +SHE+RTP+T + G+++V+K + +         +Y + I      +  +V+DL
Sbjct: 241 RQEFFANISHELRTPITYLEGYAQVLKKRLY--ETEEEKDKYLDIIHEEAMRLQHLVDDL 298

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSV 704
            D++K+E GK++L  E + L E    A+  ++L A EK + ++T   +NIP I  D    
Sbjct: 299 FDLAKMEEGKVSLSLEWIDLAEITDNAVQKIKLKAGEKNLSLQTKINSNIPLIYGDGLRT 358

Query: 705 KQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIP 764
           +Q+ LN+L NA+ +T  G  I++      +  + + V DTG+G+   E+      F ++ 
Sbjct: 359 EQVLLNLLENAVRYTEKGS-IVVELDQNRS-FIYIAVEDTGMGIPEDEIPYIFDRFYRVE 416

Query: 765 NSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
            S+  +  GTGLGLP+AK +V+   G+  +FS    GT  EI F
Sbjct: 417 KSRSRQYGGTGLGLPIAKKLVELQGGELKVFSKLGHGTRFEIRF 460


>gi|119476961|ref|ZP_01617242.1| Multi-sensor Hybrid Histidine Kinase [marine gamma proteobacterium
           HTCC2143]
 gi|119449768|gb|EAW31005.1| Multi-sensor Hybrid Histidine Kinase [marine gamma proteobacterium
           HTCC2143]
          Length = 895

 Score =  273 bits (698), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 81/274 (29%), Positives = 138/274 (50%), Gaps = 10/274 (3%)

Query: 545 IKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
             K+  S+   +T  D     ++   L   ++  +  S+ K DFLA++SHE+RTPLT ++
Sbjct: 255 ATKVENSTRRVVTAMD--ALSKKNRALEKTQQALKLASTAKDDFLAKMSHELRTPLTTVV 312

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           GFS ++   +     N + +EY++ I  +  L+LD +N++LD SK++S  +++      L
Sbjct: 313 GFSRLLNQSKM----NSKQVEYSDNITVAAELLLDTINNMLDFSKLQSSAVSIENIKFDL 368

Query: 665 DEAVSEAISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGG 723
            EA+   +++    A    + +      NIPR+L  D   +KQI  N+LSNA+ FT  G 
Sbjct: 369 REAMEGLVAMHAYQAESTGLDLILIIDRNIPRLLLGDPTRIKQIVNNLLSNAVKFTKQGE 428

Query: 724 QI-IIST--THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
            +  +S       +  + + V D+G+GM      +  +PF Q  ++   R  GTGLGL +
Sbjct: 429 VVLRVSLMKGENDDGSLSIEVIDSGIGMDEKSQARLFQPFTQADDTITRRFGGTGLGLVI 488

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
            K + +   G   I S    GT + +  PL  T 
Sbjct: 489 CKQLAELMGGDIVINSDLGVGTCMTVTLPLLATD 522


>gi|300694671|ref|YP_003750644.1| capsular synthesis two-component sensor kinase and response
           regulator transcription regulator protein (rcsc)
           [Ralstonia solanacearum PSI07]
 gi|299076708|emb|CBJ36047.1| putative capsular synthesis two-component sensor kinase and
           response regulator transcription regulator protein
           (rcsC) [Ralstonia solanacearum PSI07]
          Length = 1098

 Score =  273 bits (698), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 116/667 (17%), Positives = 220/667 (32%), Gaps = 60/667 (8%)

Query: 157 LYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSS 216
           L V  D++  P+    +      GF             A+G                   
Sbjct: 134 LRVLRDVSGAPLMDAQKTGVTLDGFLYAPDATFLAAFPAMG------------------- 174

Query: 217 VEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFH 276
                 D+   +   P   ++ +++++ +  A         + PL    + +        
Sbjct: 175 ----PADLQRAREQGPQAFIRERIAAVEQRIAASAPQTVRSRRPLWYPADEANGHASVSQ 230

Query: 277 TINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVY 336
            I       ++          + F     R       +F  G+       D  P      
Sbjct: 231 LIVPMYREHERVLTIALTLPDQQFTRFFLRKESRRPGFFLLGKTGQRNLGDP-PTDVDEK 289

Query: 337 SHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAA 396
              +   AN S+      +     +          + +++  + I        D      
Sbjct: 290 RLLDKILANASWSGRAGAEPTTFYKDGI----FFVSRRIAGPDWIALYAYRWRD-----V 340

Query: 397 SARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
           ++ L    +       +              M              + +K+        +
Sbjct: 341 ASDLQREFFTGMLFCVLAL-------GLLWAMAVYFDLRVTRPLLSDAKKLIEAEHFSKA 393

Query: 457 ILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTE 515
           I++    GI + + E   IL  N   +++ G   ++  R+ +   + +     +      
Sbjct: 394 IIDTLPIGIGVYSPESDFILLENCVAARMLGNVSDEQRRRFYRHVMHERDAEPVP----- 448

Query: 516 ILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575
                    +E     S  +   + +     +   SS     + D++E K  +  L  AK
Sbjct: 449 ---GAQHSFIEVRWEISEGQSSYIGVASSWTRFGGSSAVLFGLVDMNERKANEILLVEAK 505

Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
           + A++ +  KS FLA V HEIRTPL   IG  E++              E+ +   RS +
Sbjct: 506 QTADEANRAKSMFLAIVGHEIRTPLHGAIGHLELLARSSLSL----EQREWVDMTSRSFD 561

Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP 695
            +L +VNDLLD +KIE+  + +   P+  +E +            +  +        ++ 
Sbjct: 562 ALLTLVNDLLDSTKIEANALQISPVPMCPNEVLERCARSFGAAIVQGGVAFHCITDPDLD 621

Query: 696 RILADL-RSVKQIALNILSNAIHFTPSGGQIIISTTH--TSNEEV--ILRVRDTGVGMTN 750
            ++    + + QI  N+LSNA  FT  G  I IS+      + +V     V DTG+G+  
Sbjct: 622 LVVDGDDQRLTQILQNLLSNAAKFTERG-TITISSRCLKREDGKVWARFEVADTGIGIPA 680

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP- 809
                   P  Q  +S   R  GTGLGL L + +     G+  + S P  G+   +  P 
Sbjct: 681 AMQSTIFNPLAQADDSISRRFGGTGLGLFLCRNLAHLMGGRISVRSEPGIGSAFRVDLPF 740

Query: 810 LYDTSHP 816
           + +T  P
Sbjct: 741 VQNTRAP 747


>gi|197117203|ref|YP_002137630.1| Hpt domain-containing sensor histidine kinase response regulator
           [Geobacter bemidjiensis Bem]
 gi|197086563|gb|ACH37834.1| sensor histidine kinase response regulator, Hpt domain-containing
           protein [Geobacter bemidjiensis Bem]
          Length = 724

 Score =  273 bits (698), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 73/256 (28%), Positives = 123/256 (48%), Gaps = 13/256 (5%)

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           Q   +L  A   AE  ++ KS FLA +SHEIRTP+  +IG ++++       +       
Sbjct: 197 QRTTELEEALVKAEAATAAKSVFLANMSHEIRTPMNGVIGLAKLLMETPLDKV----QQG 252

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           Y   +      +L I+N++LD+SK+E+G + L      L   +  ++    L   EK + 
Sbjct: 253 YMESLSDCAENLLTIINEILDVSKVEAGMITLEAIVFDLRRFLDRSLQPFVLRGQEKGVR 312

Query: 686 IRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILR 740
           +R      +P  +L D   ++QI  N+L NA+ FT  G  I ++   T + E    +   
Sbjct: 313 VRLEAYPGLPELVLGDPVRLRQILGNLLGNALKFTQKGS-ITLTAALTGSGENGVGLKFS 371

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V DTG+G+    +E   + F Q  +S      GTGLGL ++K++V+   G+  + S   K
Sbjct: 372 VADTGIGIAPEAIEVIFEKFSQADSSTTRLYGGTGLGLSISKSLVELMGGELSVQSALGK 431

Query: 801 GTLIEIIFPLYDTSHP 816
           G++        + S P
Sbjct: 432 GSVFSFCI---ELSQP 444


>gi|146305216|ref|YP_001185681.1| alginate biosynthesis sensor protein KinB [Pseudomonas mendocina
           ymp]
 gi|145573417|gb|ABP82949.1| Alginate biosynthesis sensor protein KinB [Pseudomonas mendocina
           ymp]
          Length = 598

 Score =  273 bits (698), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 95/558 (17%), Positives = 203/558 (36%), Gaps = 40/558 (7%)

Query: 262 LTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENL 321
             + E+    ++ F +     ++ K     +Q   + +  +         +    +  + 
Sbjct: 72  TPNPEALENIRQAFRSTLAEGFSAKLGADYVQGLEQAAILHRQMEQVAESATPAGQSPHN 131

Query: 322 TP------ETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKL 375
                   E   K            +     +       +S   I     ++ L     +
Sbjct: 132 LAGNIPFTEAFQKLRNHLL-DQQDRVVSWVIAAEHKAGERSR-LIAGLLVMTGL----AV 185

Query: 376 SDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEP 435
                I    + R     I   AR        +  + +   P  +             E 
Sbjct: 186 LAIGVITANGIARRFGAPIDLLARAADQIGKGQYDVVLPVSPVVELAVLSRRFG-LMTEA 244

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRK 495
                  N  ++     +L ++L++  DG+ I++  G +   N        +  +DI  +
Sbjct: 245 LRQYHSSNLTQLLNSEGRLKAVLDSIDDGLVILDALGRVEHANPVALSQLSWK-QDIQDQ 303

Query: 496 PFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-LGSTKEEKLLSLRIIIKKLPFSS-- 552
           P    L  +    ++  L ++L+ +  +       +    E +LL+  +   ++      
Sbjct: 304 PIGPLLPGH---AVDEALRQVLAGEPMREPPADLQIDRNGEVRLLAWALTPVQVREGGSV 360

Query: 553 CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN 612
              + + D++E +  +                +S+F+ R SHE+RTP+T  +  +  +  
Sbjct: 361 GAVMVLRDVTEQRAFE--------------RVRSEFILRASHELRTPITG-MHMAFSLLR 405

Query: 613 QRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAI 672
           +R       R  +    +D     ++ +++DLL+ S+ ++G   L   P  L   + +A 
Sbjct: 406 ERLQVPAGGREQDLMRTVDEEMRRLVQLIDDLLNFSRYQNGLQTLQRVPCDLAVMLQQAR 465

Query: 673 SLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT 732
                 A+E+ + I       +PR+  D   + ++  ++LSNA+  + SGG + +   H 
Sbjct: 466 QRFTDEASERGVTITCELHQPLPRLSLDEGQLHRLLDSLLSNALRHSDSGGTVTLQ-AHR 524

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
             E+VI+ V+D G G+   +  +  +PF Q       R  G GLGL LA+ +V    G+ 
Sbjct: 525 HGEQVIVSVQDQGEGIPYEQQARIFEPFVQ----IGRRKGGVGLGLALAREIVQLFGGQM 580

Query: 793 YIFSTPAKGTLIEIIFPL 810
            + S P +G       P+
Sbjct: 581 GVRSRPREGANFYFSLPV 598


>gi|13474243|ref|NP_105811.1| two-component sensor histidine kinase [Mesorhizobium loti
           MAFF303099]
 gi|14024995|dbj|BAB51597.1| two-component sensor histidine kinase [Mesorhizobium loti
           MAFF303099]
          Length = 851

 Score =  273 bits (698), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 111/634 (17%), Positives = 217/634 (34%), Gaps = 28/634 (4%)

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244
                                 L E  K  + +  E   +              +  S  
Sbjct: 227 RSQARLKIDNQRLAADHDTMIGLLEALKMPAWLRDEHGRLKWVNRAYADAV---EAESAE 283

Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
                  + L  +    + ++  + P  E   +  +    +        +    +     
Sbjct: 284 AAVRDAREFLGGQAREAIDAQHKTHPVFEQSLSTVIEGDRRVFAVTDFASPDGSAGLAAD 343

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIA 363
                ++   ++       +T+D+      ++     L + N +F  L    S   +  A
Sbjct: 344 TSAIEAIRGEYERTVRSHADTLDQLNTAVAIFDTDEKLRFFNQAFQKLWGLDS-GFLHSA 402

Query: 364 GGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQ 423
              + LLD  +     A +P      +    A  A      W          +      +
Sbjct: 403 PDNALLLDRLRSEGKIAEQPEWRRWKEGLLGAYRAVESQEHWWHLPDGKTIRVVANPQPK 462

Query: 424 FPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSK 483
                    +  +       +  + ++       L+  ++G+A+   +G +  +N A + 
Sbjct: 463 GGVTWVFENLTEKMDLESRYRTAVRVQGE----TLDNLAEGVAVFGPDGRLRLSNPAFAT 518

Query: 484 LFGYPVEDIL-RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL---L 539
           L+G   E        +   +      ++      ++       +        + +L    
Sbjct: 519 LWGLSGEAAKPNVHVSTIRDLCDRQAVDSPWPGFVA--AITGFDDERRDRHGQSELNNGT 576

Query: 540 SLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTP 599
            LR  +  LP      +T  D+++    +  L    +  EK    K+DF+  VS+E+R+P
Sbjct: 577 VLRYAVIPLPNGQ-VMMTFVDVTDSVHVERALKDKNEALEKSDQLKNDFVQHVSYELRSP 635

Query: 600 LTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHF 659
           LT IIGF+E++     GPL N +  EY  ++  S +++L IVND+LD++ +++G M L  
Sbjct: 636 LTNIIGFTELLSLPTTGPL-NQKQREYVEHVSSSSSVLLTIVNDILDLATVDAGIMQLDI 694

Query: 660 EPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT 719
             V +D  ++ A  LV     E  I +             D   ++QI  N+LSNA ++ 
Sbjct: 695 SEVHVDRTIAAAAELVADRLQEHSIRLEVDARAAPKTFHGDEIRIRQILYNLLSNAANYA 754

Query: 720 PSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFG----QIPNSQQIRGEGTG 775
           P    I ++  H ++  V   V D G GM    L+   + F              G    
Sbjct: 755 PEASTIRLACRHLADG-VEFSVHDDGPGMPPDVLDSVFRRFEPRANGGRRRGAGLGL--- 810

Query: 776 LGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
               + K+ V+ + G   I +   KGT +   FP
Sbjct: 811 ---SIVKSFVELHGGNVRIETGKDKGTTVICTFP 841



 Score = 46.2 bits (108), Expect = 0.021,   Method: Composition-based stats.
 Identities = 40/374 (10%), Positives = 94/374 (25%), Gaps = 24/374 (6%)

Query: 87  WNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGK 146
           W  D HG LK ++      +   + +       +              D   + +  + +
Sbjct: 258 WLRDEHGRLKWVNRAYADAVEAESAEAAVRDAREFLGG----QAREAIDAQHKTHPVFEQ 313

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
           +    IEG      +   A P         G  G      + ++       + +      
Sbjct: 314 SLSTVIEGDRRVFAVTDFASP--------DGSAGLA-ADTSAIEAIRGEYERTVRSHADT 364

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK--YPLLTS 264
           L ++    +  + ++   F  Q+      + +         A   D L++E         
Sbjct: 365 LDQLNTAVAIFDTDEKLRFFNQAFQKLWGLDSGFLHSAPDNALLLDRLRSEGKIAEQPEW 424

Query: 265 EESSLPEQEDFHTINLNQYTKKQ-------YFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
                     +  +   ++                Q     ++ + +      L + +  
Sbjct: 425 RRWKEGLLGAYRAVESQEHWWHLPDGKTIRVVANPQPKGGVTWVFENLTEKMDLESRYRT 484

Query: 318 GENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLS 376
              +  ET+D       V+   G L  +NP+F  L               +      + +
Sbjct: 485 AVRVQGETLDNLAEGVAVFGPDGRLRLSNPAFATLWGLSGEAAKPNVHVSTIRDLCDRQA 544

Query: 377 DNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
            ++   P  +            R    + N    L    IP          +        
Sbjct: 545 VDSPW-PGFVAAITGFDDERRDRHGQSELNNGTVLRYAVIPLPNGQVMMTFVDVTDSVHV 603

Query: 437 DVDTRINKRKMEIE 450
           +   +     +E  
Sbjct: 604 ERALKDKNEALEKS 617


>gi|323694952|ref|ZP_08109102.1| sensor protein [Clostridium symbiosum WAL-14673]
 gi|323501042|gb|EGB16954.1| sensor protein [Clostridium symbiosum WAL-14673]
          Length = 1032

 Score =  273 bits (698), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 77/271 (28%), Positives = 127/271 (46%), Gaps = 16/271 (5%)

Query: 563 EWKQEKNKL------SHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
           E ++   ++         K  A+  S  K+DFL+R+SHEIRTP+ AI+G + +    R  
Sbjct: 624 EQRRVLAEIGKIVPSFVMKARADAVSQAKTDFLSRMSHEIRTPMNAIVGMTAIA---RSA 680

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
                + ++    +D S   +L +VND+LD+S+IESGKM L+  P+ L   +S    +V+
Sbjct: 681 AGNKEQVLKCLEKLDNSSKYLLHLVNDILDMSRIESGKMELNPTPMLLSSFLSSIDEMVR 740

Query: 677 LYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIIS---TTHT 732
           + A  K +           R + AD   ++Q+ LN++ NAI FT  GG I +        
Sbjct: 741 MQAEAKGLSFTIQNDCRTERHLTADQLRLEQVLLNLIGNAIKFTDVGGSITLHIHPVKEE 800

Query: 733 SNE-EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
                +   + DTG+G++   L      F Q   +   +  GTGLGL ++  +V    G 
Sbjct: 801 DTGLALRFSLADTGIGISPEVLPSIFNAFEQGAKNISSQYGGTGLGLAISSRLVQMMGGV 860

Query: 792 FYIFSTPAKGTL--IEIIFPLYDTSHPHDCI 820
             + S P +G+     +  P  +   P   I
Sbjct: 861 LDVKSEPGRGSEFFFTVSLPYSEVPAPQHEI 891


>gi|303323473|ref|XP_003071728.1| histidine kinase J7, putative [Coccidioides posadasii C735 delta
           SOWgp]
 gi|240111430|gb|EER29583.1| histidine kinase J7, putative [Coccidioides posadasii C735 delta
           SOWgp]
 gi|320035142|gb|EFW17084.1| signal transduction histidine-protein kinase barA [Coccidioides
           posadasii str. Silveira]
          Length = 1285

 Score =  273 bits (698), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 75/254 (29%), Positives = 127/254 (50%), Gaps = 10/254 (3%)

Query: 561 ISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGN 620
           +S  +    + + A++ AE  +  KS+FLA +SHEIRTP+  IIG +++  +        
Sbjct: 696 VSNLRDSIQRNTQAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDD---LK 752

Query: 621 PRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYAN 680
           P   E  N +    N +L I++D+LDISKIE+ +M +   P ++   V  A+  + + AN
Sbjct: 753 PYPREMLNVVHSLANSLLTIIDDILDISKIEANRMVIESIPFTMRGTVFNALKTLAVKAN 812

Query: 681 EKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIIS-----TTHTS 733
           EK + +     +++P  ++ D   ++QI LN++ NAI FT  G  ++ IS          
Sbjct: 813 EKFLNLTYQVDSSVPDYVIGDPFRLRQIILNLVGNAIKFTEHGEVKLTISKSTRELCQDE 872

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
                  V DTG+G+   +L+     F Q   S   +  GTGLGL ++K +V+   G  +
Sbjct: 873 EYAFEFSVSDTGIGIEEDKLDMIFDTFQQADGSTTRKFGGTGLGLSISKRLVNLMGGDVW 932

Query: 794 IFSTPAKGTLIEII 807
           + S    G+     
Sbjct: 933 VTSEFGHGSTFHFT 946


>gi|258404556|ref|YP_003197298.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfohalobium retbaense DSM 5692]
 gi|257796783|gb|ACV67720.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfohalobium retbaense DSM 5692]
          Length = 498

 Score =  273 bits (698), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 80/522 (15%), Positives = 175/522 (33%), Gaps = 50/522 (9%)

Query: 312 SAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLD 371
                 G +L    ++      +V    +L     +   + +   ++ +           
Sbjct: 5   RLLETYGLDLLRAVLETTSDAIYVLDSEDLVVELNAPAAVQRGAPLETLRGRPWYDLF-- 62

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
                     + + + R+ +  +    R+       E  L          +     + + 
Sbjct: 63  -DNEVGQRRRQILAMARNQKEMLHYEDRI-------EPGLVFDVRIQPLFDACASVVGRV 114

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVED 491
               +    R  +R    E ++L + +E   + + I++   +I   N++   L GY  + 
Sbjct: 115 ICMRDISQARKQER----ERLRLGTAIEQAVEAVLIMDENLVIQYVNQSFEDLTGYSQQQ 170

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
               P  V  + +        ++  LS          T  + K+ +L  +   +  +   
Sbjct: 171 AKGLPLDVLYQDSEQRRWYAAISATLSQGEIWVGR--TRNTGKDGRLFRVEKTVAPIRGQ 228

Query: 552 SC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFS 607
           S     Y     D+   +Q + +L  A+K+            + ++H+    L  I+  +
Sbjct: 229 SGVILGYVSVWRDLGPVEQLERQLRTAQKM-----EAIGTLASGIAHDFNNILGPILLNA 283

Query: 608 EVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEA 667
           +++  +   PL +    +    I+ +      +V  +L + +    +      P  L   
Sbjct: 284 QLLLER--SPLCDEE-RDLLQEINDAAERARHLVRQILHLGRRREAE---QPVPFRLSTI 337

Query: 668 VSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQI-- 725
           + E   L++    E  + I          I+AD   + Q  +N+ +NA+H       +  
Sbjct: 338 IKECCKLLRPTLPE-TLRIEHRLHTEQDTIVADPTQIHQAIMNLCTNAVHAMDRRPGVLR 396

Query: 726 ---------IISTTHT---SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEG 773
                     I T          + L + D+G GM+   L +   PF    N     G G
Sbjct: 397 FVLQTADPETIRTKPQLNVGRPYICLAIEDSGRGMSEEVLSQVFDPFFTTKND----GLG 452

Query: 774 TGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
           TGLGLP+ + ++    G   + S P +G++  +  PL     
Sbjct: 453 TGLGLPVVQNIITQLGGTVTVQSAPGQGSVFALYLPLAPAEA 494



 Score = 50.8 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/231 (10%), Positives = 53/231 (22%), Gaps = 13/231 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP--NNHIGDLLKRQNTWYGK 146
           +D +  ++ +++      G    +  G+ L DV             I   L +   W G+
Sbjct: 147 MDENLVIQYVNQSFEDLTGYSQQQAKGLPL-DVLYQDSEQRRWYAAISATLSQGEIWVGR 205

Query: 147 TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
           T     +G    V   +A  PI  ++    G+    +              +   K  + 
Sbjct: 206 TRNTGKDGRLFRVEKTVA--PIRGQSGVILGY--VSVWRDLGPVEQLERQLRTAQKMEAI 261

Query: 207 LHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYP------ 260
                            I                        +                 
Sbjct: 262 GTLASGIAHDFNNILGPILLNAQLLLERSPLCDEERDLLQEINDAAERARHLVRQILHLG 321

Query: 261 LLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSL 311
                E  +P +         +  +     TL+   +   E  +    P+ 
Sbjct: 322 RRREAEQPVPFRLSTIIKECCKLLRPTLPETLRIEHRLHTEQDTIVADPTQ 372



 Score = 46.6 bits (109), Expect = 0.019,   Method: Composition-based stats.
 Identities = 36/326 (11%), Positives = 86/326 (26%), Gaps = 22/326 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYG 145
            + +D+   + E++       G     + G    D+      +        +        
Sbjct: 26  IYVLDSEDLVVELNAPAAVQRGAPLETLRGRPWYDL----FDNEVGQRRRQILAMARNQK 81

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           +   +        V  D+   P++       G      V   R  +  R   +   +  +
Sbjct: 82  EMLHYEDRIEPGLV-FDVRIQPLFDACASVVGR-----VICMRDISQARKQERERLRLGT 135

Query: 206 HLHEIKKGHSSVEKEK---YDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
            + +  +    +++     Y   S +    + + + K   L   Y   +           
Sbjct: 136 AIEQAVEAVLIMDENLVIQYVNQSFEDLTGYSQQQAKGLPLDVLYQDSEQRRWYAAISAT 195

Query: 263 TSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLT 322
            S+      +      +   +  ++    ++  S     Y+S           +      
Sbjct: 196 LSQGEIWVGRTRNTGKDGRLFRVEKTVAPIRGQSGVILGYVSVWRDLGPVEQLERQLRTA 255

Query: 323 P--ETVDKCPIPFFVYSHGNLF---YANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
              E +         +   N+      N     L   +S    E    L  + DA + + 
Sbjct: 256 QKMEAIGTLASGIA-HDFNNILGPILLN---AQLLLERSPLCDEERDLLQEINDAAERAR 311

Query: 378 NNAIKPVMLYRSDRTCIAASARLHTI 403
           +   + + L R          RL TI
Sbjct: 312 HLVRQILHLGRRREAEQPVPFRLSTI 337


>gi|225026716|ref|ZP_03715908.1| hypothetical protein EUBHAL_00968 [Eubacterium hallii DSM 3353]
 gi|224955977|gb|EEG37186.1| hypothetical protein EUBHAL_00968 [Eubacterium hallii DSM 3353]
          Length = 961

 Score =  273 bits (698), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 78/251 (31%), Positives = 138/251 (54%), Gaps = 6/251 (2%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           + ++   KL  A K AE  S  K+ FL  +SH+IRTP+  I+G++++++N+  G    P 
Sbjct: 550 DTQKLNEKLEIALKKAEDASLAKTSFLNNMSHDIRTPMNVILGYAQLMENELNGK-DIPE 608

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
            +E+   + +SGNL+L I+N++LD+++IESG+M +      +++      ++    A +K
Sbjct: 609 VLEHLEKLQQSGNLLLSIINNVLDMARIESGRMEIDENYCRIEDVWKSLFAVFDEKARKK 668

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIII---STTHTSNEE--V 737
            I +  +       +L D+  VK+I +NILSNAI +TP+GG +++         +    V
Sbjct: 669 NISLHYTMNVEHEHVLTDVTKVKEILVNILSNAIKYTPAGGSVMVYVDELPCDESGYMIV 728

Query: 738 ILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFST 797
            +R+ DTG+GM+   L K  + F +  N+ + +  GTGLG+ + K  VD   G   + S 
Sbjct: 729 RIRISDTGIGMSQDYLTKIFEAFTREKNTTKSKIAGTGLGMSIVKNYVDLLGGTIDVESE 788

Query: 798 PAKGTLIEIIF 808
             KG+   +  
Sbjct: 789 LGKGSTFTVTL 799


>gi|163746360|ref|ZP_02153718.1| phosphate regulon sensor protein, putative [Oceanibulbus indolifex
           HEL-45]
 gi|161380245|gb|EDQ04656.1| phosphate regulon sensor protein, putative [Oceanibulbus indolifex
           HEL-45]
          Length = 350

 Score =  273 bits (698), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 75/367 (20%), Positives = 145/367 (39%), Gaps = 31/367 (8%)

Query: 454 LCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYL 513
           L  ++ A       IN E  I   N     L G   + ++ + F   L       + + +
Sbjct: 8   LADVVAALPLPSVAINAEERITVLNTPAEDLLG---KGLIGRHFVTALR---QPALVNAV 61

Query: 514 TEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSH 573
              LS +        ++G           + ++ L       L+ +D++E          
Sbjct: 62  ERCLSGEGPCQARFNSIGGEHGTTY---DVSLRPLGDHGIVLLSFNDVTE---------- 108

Query: 574 AKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRS 633
                 +    + DF+A VSHE+RTPLTA+IGF E ++              +   + + 
Sbjct: 109 ----MAQAGQMRRDFVANVSHELRTPLTALIGFIETLQGPARD--DTAARERFLGIMAQE 162

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693
              +  +V +LL +S++E+ +      P+ + + +   +  +   A +  + +       
Sbjct: 163 AERMNRLVGELLSLSRVEAEERVRPEAPLDVRDVLGGTLRNLGPLAADSNVTLVPQLGEE 222

Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT------SNEEVILRVRDTGVG 747
              +L D   + Q+  N++ NAI +      + IST             V + VRD G G
Sbjct: 223 PAHVLGDADQLMQVFTNLIENAIKYGGRDSSVEISTEIASYDPAMRGPAVHVSVRDHGPG 282

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           +    L +  + F ++ + +     GTGLGL + K +++ + G+  I ST  +G    +I
Sbjct: 283 IDAIHLPRLTERFYRVDSHRSRALGGTGLGLAIVKHIMNRHRGRLKITSTSGQGAEFRVI 342

Query: 808 FPLYDTS 814
            P+   S
Sbjct: 343 LPMKTES 349


>gi|86145892|ref|ZP_01064220.1| hybrid sensory kinase [Vibrio sp. MED222]
 gi|85836347|gb|EAQ54477.1| hybrid sensory kinase [Vibrio sp. MED222]
          Length = 1223

 Score =  273 bits (698), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 71/242 (29%), Positives = 122/242 (50%), Gaps = 8/242 (3%)

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           L+ A+  A+  +  KSDFLA +SHEIRTP+ AIIG S +                Y + +
Sbjct: 466 LAAARDEADAANHAKSDFLANMSHEIRTPMNAIIGMSYLALKTDLTKA----QRNYIHKV 521

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
             S + +L ++ND+LD SKIE+GK+++      L+  +    +LV L A+++ + +    
Sbjct: 522 KLSSDTLLGLINDILDFSKIEAGKLDIEKVDFQLENVLDNITNLVGLRASDRGLELLIQV 581

Query: 691 ANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVI--LRVRDTGV 746
             ++P  ++ D   + QI +N+ +NA+ FT  G  +I IS      +++     V D+G+
Sbjct: 582 DRDVPTNLIGDPLRLGQILINLSNNAVKFTEKGEVKISISVAERQGDDIKLNFAVSDSGI 641

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           GM   +  K    F Q  +S   +  GTGLGL ++K +     G  ++ +   KG+    
Sbjct: 642 GMKQEQASKLFTKFTQADSSTTRKYGGTGLGLAISKELSQLMGGDIHVSTELGKGSTFSF 701

Query: 807 IF 808
             
Sbjct: 702 TI 703


>gi|111221865|ref|YP_712659.1| putative two-component hybrid sensor and regulator [Frankia alni
           ACN14a]
 gi|111149397|emb|CAJ61089.1| putative Two-component hybrid sensor and regulator [Frankia alni
           ACN14a]
          Length = 658

 Score =  273 bits (698), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 80/527 (15%), Positives = 175/527 (33%), Gaps = 58/527 (11%)

Query: 320 NLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
           +L    ++  P         G +   N     L  Y   + +     +  L+       +
Sbjct: 8   DLASGFLEAAPDAIVGVRPDGRIVLVNAQTERLFGYGRDELVGQ--SIEILVPDAARGAH 65

Query: 379 NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
            A +   L       + A   L   + +         +        P+ +       +  
Sbjct: 66  PAHRRDYLADPRPRLMGAGLELAARRRDGSEFPVEIALSSID---TPDGLIVAAAVRDVT 122

Query: 439 DTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
           D    +        +   +LEA  D I  +  +G I+  N    +LFGY  ++++ +   
Sbjct: 123 DRIRAEA-------RFRGLLEAAPDAIIGVRPDGRIVLANAQSERLFGYARDELVGQSIE 175

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQT--LEKITLGSTKEEKLLSLRIIIKKLPFSSCYS- 555
           + +     +    +  + L+    +   +        ++       I +  +        
Sbjct: 176 ILVPDAVRAAHPAHRRDYLADPQPRLMGVGLDVAARRRDGSEFPAEISLSSIDTPDGLIV 235

Query: 556 -LTMHDIS---------EWKQEKNKLSHAKKIAEKESSH--KSDFLARVSHEIRTPLTAI 603
              + D++         E  + + +    +    +             V+H+    L  +
Sbjct: 236 AAAVRDVTGRLDARLEKERLRAEAQRGRLESQLHQSQRLESLGQLAGGVAHDFNNLLGVV 295

Query: 604 IGFSEVIKNQRFGPLGNPRYIEY-------ANYIDRSGNLVLDIVNDLLDISKIESGKMN 656
           I ++  +  +           E         + I R+ +    + + LL   + E     
Sbjct: 296 INYATFVAEEIAQAAAADADKERWSDVQRDIDEILRAADRATTLTHQLLAFGRRE----T 351

Query: 657 LHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAI 716
           +    + L++ V++   L++    E  I+++TS   ++  ++AD   ++Q+  N+  NA 
Sbjct: 352 VQPRVIDLNQVVTDMEHLLRRTLGEH-IVLQTSLHPDLWPVMADPGQIEQVLTNLAVNAR 410

Query: 717 HFTPSGGQIIISTTHTSNE--------------EVILRVRDTGVGMTNYELEKAMKPFGQ 762
                GG + I TT+   +                  RV D+G GM+   + +  +PF  
Sbjct: 411 DAMFGGGVLTIDTTNVDADYEYAAERPDVKVGRYTQFRVSDSGTGMSPELVARVFEPFFT 470

Query: 763 IPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
                  +GEG+GLGL     ++    G   I+S P  GT I  + P
Sbjct: 471 TKP----KGEGSGLGLATVYGIISQAGGHSAIYSEPGVGTTIRCLLP 513



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 19/218 (8%), Positives = 52/218 (23%), Gaps = 4/218 (1%)

Query: 238 NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQE-DFHTINLNQYTKKQYFGTLQNNS 296
           +++   +      D                  P        +   +    ++   +  +S
Sbjct: 46  DELVGQSIEILVPDAARGAHPAHRRDYLADPRPRLMGAGLELAARRRDGSEFPVEIALSS 105

Query: 297 KESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYK 355
            ++ + L               E      ++  P         G +  AN     L  Y 
Sbjct: 106 IDTPDGLIVAAAVRDVTDRIRAEARFRGLLEAAPDAIIGVRPDGRIVLANAQSERLFGYA 165

Query: 356 SVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTF 415
             + +     +  L+     + + A +   L       +     +   + +     A   
Sbjct: 166 RDELVGQ--SIEILVPDAVRAAHPAHRRDYLADPQPRLMGVGLDVAARRRDGSEFPAEIS 223

Query: 416 IPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQ 453
           +                     +D R+ K ++  E  +
Sbjct: 224 LSSIDTPDGLIVAAAVRDVTGRLDARLEKERLRAEAQR 261



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/246 (8%), Positives = 56/246 (22%), Gaps = 24/246 (9%)

Query: 91  AHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP--NNHIGDLLKRQNTWYG--- 145
             G +  ++ +  +  G    +++G  + ++            H  D L           
Sbjct: 26  PDGRIVLVNAQTERLFGYGRDELVGQSI-EILVPDAARGAHPAHRRDYLADPRPRLMGAG 84

Query: 146 -KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKF 204
            +      +G+   V I L+++             G  +    R   D      R     
Sbjct: 85  LELAARRRDGSEFPVEIALSSIDTPD---------GLIVAAAVRDVTDRIRAEARFRGLL 135

Query: 205 SHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTS 264
               +   G     +        +    + R  +++   +      D V           
Sbjct: 136 EAAPDAIIGVRPDGRIVLANAQSERLFGYAR--DELVGQSIEILVPDAVRAAHPAHRRDY 193

Query: 265 EESSLP------EQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEG 318
                P              + +++  +    ++                  L A  ++ 
Sbjct: 194 LADPQPRLMGVGLDVAARRRDGSEFPAEISLSSIDTPDGLIVAAAVRDVTGRLDARLEKE 253

Query: 319 ENLTPE 324
                 
Sbjct: 254 RLRAEA 259


>gi|270294109|ref|ZP_06200311.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270275576|gb|EFA21436.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 758

 Score =  273 bits (698), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 79/341 (23%), Positives = 149/341 (43%), Gaps = 13/341 (3%)

Query: 471 EGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITL 530
           EG  +S +    +L  +    +L    T ++  +        +      +      +   
Sbjct: 426 EGDSVSCDSQFCELIHHCPGRLLLDEITPYIHPDDLPAFRKNI--AARHERTHHKGQYRC 483

Query: 531 GSTKEEKLLSLRIIIKKLPFSSCYSL-TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
             T E +           P  +      + +I E K  + +L  ++++AE+    K  FL
Sbjct: 484 NFTGEFQWWEFSYNTIHTPGHAPIIAGLLQNIQELKDHEQELIESRELAEQA-ELKQSFL 542

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
             +SHEIRTPL AI+GFS+++ N+      +    E+ + I+ +  L+L +V D+L++S+
Sbjct: 543 NNMSHEIRTPLNAIVGFSDMLANEP--EFSDEERQEFVDIINTNTKLLLKLVGDVLELSR 600

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709
           IESG ++  F+  S+ + + +      L      +     F     ++  D   + Q+  
Sbjct: 601 IESGNLSFIFQRESVRQLLDDVYQTHSLLIQPP-LQFLKDFPPEDVQVNVDPMRLTQVLT 659

Query: 710 NILSNAIHFTPSGGQIIISTTHTSN-EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQ 768
           N L+NA  FT  G  I +     S   EV L V DTG+G+ + E +   + F +    + 
Sbjct: 660 NFLNNANKFTKEGS-IQLGYCCPSGMSEVHLYVEDTGIGIPHSEQKMIFERFYK----RS 714

Query: 769 IRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
              +G GLGL +   +V+   G+  + S   +G+   ++ P
Sbjct: 715 EFSQGVGLGLSICVLIVEKMGGRIELQSEEGRGSRFTVVLP 755


>gi|283770562|ref|ZP_06343454.1| two-component system OmpR family sensor histidine kinase ResE
           [Staphylococcus aureus subsp. aureus H19]
 gi|283460709|gb|EFC07799.1| two-component system OmpR family sensor histidine kinase ResE
           [Staphylococcus aureus subsp. aureus H19]
          Length = 582

 Score =  273 bits (698), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 62/376 (16%), Positives = 154/376 (40%), Gaps = 41/376 (10%)

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
            +   +   +        S++ +  +G+  IN    I+ +N+  + +             
Sbjct: 241 TEIEEHVDALSTSKNIRDSLINSMVEGVLGINESRQIILSNKMANDIMD----------- 289

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK---KLPFSSCY 554
              ++++  + +   + +       +  +          +   +        +    S  
Sbjct: 290 --NIDEDAKAFLLRQIEDTFKSKQTEMRDLEM-----NTRFFVVTTSYIDKIEQGGKSGV 342

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
            +T+ D++                      K DF+A VSHE+RTP++ + G++E I +  
Sbjct: 343 VVTVRDMT--------------NEHNLDQMKKDFIANVSHELRTPISLLQGYTESIVDGI 388

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     E    +      +  +VN+LL+++++++  ++++ E   +   + +    
Sbjct: 389 VTE--PDEIKESLAIVLDESKRLNRLVNELLNVARMDAEGLSVNKEVQPIAALLDKMKIK 446

Query: 675 VQLYANEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
            +  A++  + +  ++     R+ + D+  + Q+  N++ NA  +T  G +I I+     
Sbjct: 447 YRQQADDLGLNMTFNYCKK--RVWSYDMDRMDQVLTNLIDNASRYTKPGDEIAITCDENE 504

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
           +E++ L ++DTG G+    L++    F ++  ++    +GTGLGL + K +++ + G   
Sbjct: 505 SEDI-LYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQGTGLGLFICKMIIEEHGGSID 563

Query: 794 IFSTPAKGTLIEIIFP 809
           + S   KGT   I  P
Sbjct: 564 VKSELGKGTTFIIKLP 579


>gi|70729128|ref|YP_258864.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68343427|gb|AAY91033.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens
           Pf-5]
          Length = 633

 Score =  273 bits (698), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 74/262 (28%), Positives = 130/262 (49%), Gaps = 13/262 (4%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E  Q  ++L   ++ AE+ +  KSDFLA +SHE+RTP+  ++G  ++++  +        
Sbjct: 243 EQHQAMSQLIQTREEAERANKAKSDFLAMMSHELRTPMNGVLGMLQLLETTQM----TQE 298

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             EYA     S   +L ++ND+LD S+IE   + L   P +L E ++ +    Q  A ++
Sbjct: 299 QSEYAALASESTEHLLKVINDILDFSRIERSALELEHIPFNLAELITSSAQAFQHSALQR 358

Query: 683 RILIRTSFANNI--PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT--SNEEVI 738
            + ++      +   ++  D   ++QI +N++ NA+ FT  G  I I        +E + 
Sbjct: 359 GLDLQLRLPPGMESLQVKGDPTRIRQILVNLIGNALKFTEQGS-ITIEPQWQALDHELLW 417

Query: 739 LR--VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
               VRD+G+G++   LE     F Q  +S   R  GTGLGLP+A+ + +   G     S
Sbjct: 418 FTCAVRDSGIGISPASLELMFDAFQQADSSISRRYGGTGLGLPIARTLAERMGGTLRAQS 477

Query: 797 TPAKGTLIEIIFP--LYDTSHP 816
              +G++  +  P  L+  S P
Sbjct: 478 EEGRGSVFTLEIPLALFQQSLP 499


>gi|75416541|sp|Q9L523|SRRB_STAAU RecName: Full=Sensor protein srrB; AltName: Full=Staphylococcal
           respiratory response protein B
 gi|7839534|gb|AAF70313.1|AF260326_2 SrrB [Staphylococcus aureus]
          Length = 583

 Score =  273 bits (698), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 62/376 (16%), Positives = 154/376 (40%), Gaps = 41/376 (10%)

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
            +   +   +        S++ +  +G+  IN    I+ +N+  + +             
Sbjct: 242 TEIEEHVDALSTSKNIRDSLINSMVEGVLGINESRQIILSNKMANDIMD----------- 290

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK---KLPFSSCY 554
              ++++  + +   + +       +  +          +   +        +    S  
Sbjct: 291 --NIDEDAKAFLLRQIEDTFKSKQTEMRDLEM-----NTRFFVVTTSYIDKIEQGGKSGV 343

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
            +T+ D++                      K DF+A VSHE+RTP++ + G++E I +  
Sbjct: 344 VVTVRDMT--------------NEHNLDQMKKDFIANVSHELRTPISLLQGYTESIVDGI 389

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     E    +      +  +VN+LL+++++++  ++++ E   +   + +    
Sbjct: 390 VTE--PDEIKESLAIVLDESKRLNRLVNELLNVARMDAEGLSVNKEVQPIAALLDKMKIK 447

Query: 675 VQLYANEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
            +  A++  + +  ++     R+ + D+  + Q+  N++ NA  +T  G +I I+     
Sbjct: 448 YRQQADDLGLNMTFNYCKK--RVWSYDMDRMDQVLTNLIDNASRYTKPGDEIAITCDENE 505

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
           +E++ L ++DTG G+    L++    F ++  ++    +GTGLGL + K +++ + G   
Sbjct: 506 SEDI-LYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQGTGLGLFICKMIIEEHGGSID 564

Query: 794 IFSTPAKGTLIEIIFP 809
           + S   KGT   I  P
Sbjct: 565 VKSELGKGTTFIIKLP 580


>gi|183219921|ref|YP_001837917.1| sensor protein [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
 gi|189910045|ref|YP_001961600.1| two component response regulator sensor histidine kinase/response
           regulator subunits [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167774721|gb|ABZ93022.1| Sensor and regulator protein of a two component response regulator
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167778343|gb|ABZ96641.1| Putative sensor protein with PAS domain [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
          Length = 504

 Score =  273 bits (698), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 97/499 (19%), Positives = 186/499 (37%), Gaps = 47/499 (9%)

Query: 319 ENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSD 377
                + ++      +V    GN  Y N   + +    + + +     +  L   P L  
Sbjct: 34  PQYFDKILETRTNAVYVLDKDGNYTYVNAKAVEMAGKSAEELLGQN--IWNLF--PVLQT 89

Query: 378 NNAIKPVMLYRSDRTCI-AASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPE 436
                 +     ++    +      T+ W                   P+      I  E
Sbjct: 90  IEFGNQLSEAIKEKKTFRSEETYFETLGWYDMQVF-------------PQENFTIIIATE 136

Query: 437 DVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRA-VSKLFGYP----VED 491
              T+  K +    + +  +IL A  D +  I+R G   + N        G+       +
Sbjct: 137 VTHTKNAKDEYSQIITKNKTILNALPDLLYGIHRNG--QAINHKEFPHFTGWDCKNKETN 194

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
           +          +N    +   L +++ L + + +E     +  E K    R         
Sbjct: 195 LCYSDIKEIFPENKLEEIQTILRQVIDLGVSKAVEYSIHDADGE-KCFEARFTKT---GE 250

Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
                 + +I+E K+ +              + K++F++ VSHE+RTPLT+I G  +++ 
Sbjct: 251 VDALAIIRNITERKKAE--------------ALKNEFISLVSHELRTPLTSIKGSIDLLL 296

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
               G + N +     N   ++   ++  V DLLDI  ++SG +N  F    L E +  +
Sbjct: 297 AGVAGEVSN-QTKSLLNICRKNTQRLVRFVTDLLDIEALDSGNINFKFRTYQLKEILQTS 355

Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
           +  ++ +A +  +L+          +  D   +     N++SNA+ +TP   ++ IS   
Sbjct: 356 VDGMRTFAEQYHVLLNFDSNFPQTSVYVDEDRLNHCITNLISNAVKYTPKFSEVTISVQ- 414

Query: 732 TSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGK 791
           T   +  +++RD G G+      +    F Q    +     G+GLGL + K  V+A  GK
Sbjct: 415 TDATKAKIQIRDNGPGIDPNFAPRLFHRFAQGAPPKDKLVGGSGLGLSITKGFVEAMNGK 474

Query: 792 FYIFSTPAKGTLIEIIFPL 810
            Y FS    GT+  I  P+
Sbjct: 475 IYFFSD-DSGTVFTIELPI 492



 Score = 43.5 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 12/70 (17%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDIL-HIDPNNHIGDLLKRQNTWY 144
            + +D  G    ++ +  +  G  A +++G  + ++  +L  I+  N + + +K + T+ 
Sbjct: 48  VYVLDKDGNYTYVNAKAVEMAGKSAEELLGQNIWNLFPVLQTIEFGNQLSEAIKEKKTFR 107

Query: 145 GKTTLWPIEG 154
            + T +   G
Sbjct: 108 SEETYFETLG 117


>gi|294627283|ref|ZP_06705869.1| histidine kinase-response regulator hybrid protein [Xanthomonas
            fuscans subsp. aurantifolii str. ICPB 11122]
 gi|292598365|gb|EFF42516.1| histidine kinase-response regulator hybrid protein [Xanthomonas
            fuscans subsp. aurantifolii str. ICPB 11122]
          Length = 1191

 Score =  273 bits (698), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 74/253 (29%), Positives = 131/253 (51%), Gaps = 8/253 (3%)

Query: 563  EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
              + +     H +++AE+ S  K+ FLA + HE+RTP+T ++G SE++         + R
Sbjct: 789  RMRAQWQLAQHKRELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLQTPL----DGR 844

Query: 623  YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
               YA+ I  +G  +L +VND LD+++IE+GK+ L +    L + V + + LV+  A +K
Sbjct: 845  QQGYASAIQLAGKHLLRLVNDALDLARIEAGKLPLDYRDFDLRQLVGQVVELVRPSAEQK 904

Query: 683  RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTS-NEEVIL 739
            ++       + +P  +  D   V+QI LN+L NA+ FT  G   + ++T      + + +
Sbjct: 905  QLAFHCELDDALPPALHGDASRVQQILLNLLFNAVKFTERGSVHLRVTTLPQHTRQGLRV 964

Query: 740  RVRDTGVGMTNYELEKAMKPFGQIPNSQQ-IRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
             VRDTG GM+  +  +  + F Q   +    R  G+GLGL + + +  A  G   + S  
Sbjct: 965  EVRDTGPGMSAEQRGRLFQRFEQAEGALTLARHGGSGLGLAICRELAAAMGGAVTVASEL 1024

Query: 799  AKGTLIEIIFPLY 811
             +G    +  PL+
Sbjct: 1025 GQGACFVVELPLH 1037


>gi|218709306|ref|YP_002416927.1| putative two-component regulatory system multi-sensor hybrid
           histidine kinase [Vibrio splendidus LGP32]
 gi|218322325|emb|CAV18455.1| putative two-component regulatory system; Multi-sensor hybrid
           histidine kinase [Vibrio splendidus LGP32]
          Length = 1223

 Score =  273 bits (698), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 71/242 (29%), Positives = 122/242 (50%), Gaps = 8/242 (3%)

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           L+ A+  A+  +  KSDFLA +SHEIRTP+ AIIG S +                Y + +
Sbjct: 466 LAAARDEADAANHAKSDFLANMSHEIRTPMNAIIGMSYLALKTDLTKA----QRNYIHKV 521

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
             S + +L ++ND+LD SKIE+GK+++      L+  +    +LV L A+++ + +    
Sbjct: 522 KLSSDTLLGLINDILDFSKIEAGKLDIEKVDFQLENVLDNITNLVGLRASDRGLELLIQV 581

Query: 691 ANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVI--LRVRDTGV 746
             ++P  ++ D   + QI +N+ +NA+ FT  G  +I IS      +++     V D+G+
Sbjct: 582 DRDVPTNLIGDPLRLGQILINLSNNAVKFTEKGEVKISISVAERQGDDIKLNFAVSDSGI 641

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           GM   +  K    F Q  +S   +  GTGLGL ++K +     G  ++ +   KG+    
Sbjct: 642 GMKQEQASKLFTKFTQADSSTTRKYGGTGLGLAISKELSQLMGGDIHVSTELGKGSTFSF 701

Query: 807 IF 808
             
Sbjct: 702 TI 703


>gi|301309818|ref|ZP_07215757.1| two-component system histidine kinase [Bacteroides sp. 20_3]
 gi|300831392|gb|EFK62023.1| two-component system histidine kinase [Bacteroides sp. 20_3]
          Length = 761

 Score =  273 bits (698), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 85/437 (19%), Positives = 161/437 (36%), Gaps = 21/437 (4%)

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
              +      +  +  +  +  +  +    + +              +            
Sbjct: 333 WVEMQRLGISKEEVPTNVHVINMPISERYKIEVFIASSLGVILLLALIGYLFYLYWREAR 392

Query: 441 RINK--RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT 498
           R  +    ++ E   L   LE  +     + + G     N   S        +I      
Sbjct: 393 RRKEVLANLKQEKEHLSLALEGGNIFAWKL-QSGTFRFDNEFFSS-VNISPREIPLDELY 450

Query: 499 VFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS-SCYS-- 555
                +    +   +   +                  +           L  +   Y   
Sbjct: 451 EMTHPDDRQSLRSLID-FICTGTISHHILQYRCDFNGKGYQWWEFRYGSLEDANDGYVIN 509

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRF 615
               +I   K  +  L  A++ AE+    KS FLA +SHEIRTPL AI+GFS ++ ++  
Sbjct: 510 GLCLNIQNIKDTEGVLISAREKAEESDRMKSAFLANMSHEIRTPLNAIVGFSNLMNSEEV 569

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
                     +   I+ + +L+L ++ND+LD+S++ESGKM+  F+   L+  ++E     
Sbjct: 570 LEPEEREQ--FVKLINTNSDLLLKLINDILDLSRMESGKMSFVFDRHDLNVLINEIYCTF 627

Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH---T 732
           QL   E  + +R         +  D   +KQ+  N ++NAI FT SG    I   +   T
Sbjct: 628 QLMMPE-GVELRMRVPEIPVIVAVDPYRLKQVLSNFINNAIKFTTSG---YIEVGYYFCT 683

Query: 733 SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
             + + + V DTG+G+   + ++    F ++        +GTGLGL + + +     G+ 
Sbjct: 684 KGDCLHIYVEDTGIGIPEEKQKQVFDRFCKLD----EFAQGTGLGLAICQVIAQRFGGEI 739

Query: 793 YIFSTPAKGTLIEIIFP 809
            + S   KG+   +  P
Sbjct: 740 QLKSEYGKGSRFTLTLP 756


>gi|284052588|ref|ZP_06382798.1| sensory box histidine kinase/response regulator [Arthrospira
           platensis str. Paraca]
          Length = 655

 Score =  273 bits (698), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 64/226 (28%), Positives = 112/226 (49%), Gaps = 12/226 (5%)

Query: 591 RVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKI 650
            +SHEIRTP+  ++G + ++           +  ++   I  S N +L I+ND+LD SK+
Sbjct: 1   NMSHEIRTPMNGVLGMTGLLLKTELDT----KQKDFVQAIRTSANHLLAIINDILDFSKL 56

Query: 651 ESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRSVKQIAL 709
           E+ ++ L      L+E +   I L+   A  K I +      N+PR +  D   ++Q+ L
Sbjct: 57  EAQEIELEDLDFDLEECLENIIDLLAAQAENKGIELAAIVDRNVPRYLRGDPGRLRQVLL 116

Query: 710 NILSNAIHFTPSGGQIIISTTHTSNEEV------ILRVRDTGVGMTNYELEKAMKPFGQI 763
           N++SN I FTP+G ++ +  +   N ++         V+DTG+G+      +  + F Q+
Sbjct: 117 NLMSNGIKFTPAG-EVTLRVSRPPNYDINAPLILRYEVQDTGIGIPPESHGRLFEAFSQV 175

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             S   +  GTGLGL + K +VD   G+  + S   +G+      P
Sbjct: 176 DASTTRKFGGTGLGLVICKQLVDVMGGEIGLESVVGQGSNFWFTLP 221


>gi|170683263|ref|YP_001744563.1| hybrid sensory histidine kinase in two-component regulatory system
           with EvgA [Escherichia coli SMS-3-5]
 gi|170520981|gb|ACB19159.1| sensor histidine kinase/response regulator EvgS [Escherichia coli
           SMS-3-5]
          Length = 1127

 Score =  273 bits (698), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 89/419 (21%), Positives = 163/419 (38%), Gaps = 12/419 (2%)

Query: 404 QWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSD 463
            W+  +                  +    +       ++ +  +E ++    ++ ++  +
Sbjct: 458 TWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKVIQGDLENQISFRKALSDSLPN 517

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQ--NTPSVMNHYLTEILSLDL 521
              ++N +G ++S N A    F          P         +  S  +    E      
Sbjct: 518 PTYVVNWQGNVISHNSAFEHYFTADYYKSAMLPLENSESPFKDVFSNTHEVTAETKENRT 577

Query: 522 RQTLEKIT-LGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEK 580
             T       G  K        +        + Y     DI+E +   + L   +  A  
Sbjct: 578 IYTQVFEIDNGIEKRCINHWHTLCNLPASEHAVYICGWQDITETRDLIHALEVERNKAIN 637

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
            +  KS FLA +SHEIRTP+++I+GF E++       L   + +E  +    +G  +L +
Sbjct: 638 ATVAKSQFLATMSHEIRTPISSIMGFLELLS---GSGLSKEQRVEAISLAYATGQSLLGL 694

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILA 699
           + ++LD+ KIESG   L  + V +   V          A  K I +  S        +  
Sbjct: 695 IGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPERYLVKI 754

Query: 700 DLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEEVIL--RVRDTGVGMTNYELEKA 756
           D ++ KQ+  N+LSNA+ FT  G  +I  S  H  +   ++   + D+G G++  E ++ 
Sbjct: 755 DPQAFKQVLSNLLSNALKFTTEGAVKITTSLGHIDDNHAVIKMTIMDSGSGLSQEEQQQL 814

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            K + Q   S   +  G+GLGL + K ++    G   + S P  GT+  I  P+  T  
Sbjct: 815 FKRYSQT--SAGRQQTGSGLGLMICKELIKNMQGDLSLESHPGIGTIFTITIPVEITQQ 871


>gi|113476325|ref|YP_722386.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101]
 gi|110167373|gb|ABG51913.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101]
          Length = 1119

 Score =  273 bits (698), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 74/252 (29%), Positives = 122/252 (48%), Gaps = 11/252 (4%)

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           L+   K  E     K +FLA  SHE+RTPL  IIG +E + +   G L +         +
Sbjct: 428 LTIKNKQLENLDKLKDEFLANTSHELRTPLNGIIGITESLIDGVAGELSSE-VKNNLYLV 486

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
             SG  + +++ND+LD  K++   + L  +PV + E     I+L       K + I  S 
Sbjct: 487 IFSGKRLSNLINDILDFYKLKHRNIELKLKPVGVREVAEIVINLSSSMIGTKPLQIINSI 546

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---------VILRV 741
           + +IP + AD   ++QI  N++ NA+ FT SG +I +S     N+          + + V
Sbjct: 547 SYDIPFVDADENRLQQIFYNLVGNAVKFTDSG-KIEVSAKVLENQLENSSNNVSLLEITV 605

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
            DTG+G+ + +L++  + F Q   S      GTGLGL + K +V+ + G   + S    G
Sbjct: 606 SDTGIGIPSDKLDQIFESFEQANGSTSREYGGTGLGLAITKKLVELHKGSLCVLSEVGVG 665

Query: 802 TLIEIIFPLYDT 813
           +  +   P+  T
Sbjct: 666 SQFKFTIPISKT 677


>gi|289667389|ref|ZP_06488464.1| histidine kinase-response regulator hybrid protein [Xanthomonas
            campestris pv. musacearum NCPPB4381]
          Length = 1132

 Score =  273 bits (698), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 74/253 (29%), Positives = 128/253 (50%), Gaps = 10/253 (3%)

Query: 563  EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
              + +     H +++AE+ S  K+ FLA + HE+RTP+T ++G SE++         + R
Sbjct: 789  RMRAQWQLAQHKRELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLQTPL----DGR 844

Query: 623  YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
               YA+ I  +G  +L +VND LD+++IE+GK+ L +    L + V + + LV+  A +K
Sbjct: 845  QQGYASAIQLAGKHLLRLVNDALDLARIEAGKLPLDYRDFDLRQLVGQVVELVRPSAEQK 904

Query: 683  RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VI 738
            ++    +  + +P  +  D   V+QI LN+L NAI FT  G  + +            + 
Sbjct: 905  QLAFHCALDDALPPALHGDASRVQQILLNLLFNAIKFTERGS-VHLRVAALPEHTQQGIR 963

Query: 739  LRVRDTGVGMTNYELEKAMKPFGQIPNSQQ-IRGEGTGLGLPLAKAMVDANMGKFYIFST 797
            + VRDTG GM+  +  +  + F Q   +    R  G+GLGL + + +  A  G   + S 
Sbjct: 964  VEVRDTGPGMSAEQRGRLFQRFEQAEGALTLARHGGSGLGLAICRELAAAMGGSVTVISE 1023

Query: 798  PAKGTLIEIIFPL 810
              +G    +  PL
Sbjct: 1024 LGQGACFVVELPL 1036


>gi|21693598|gb|AAM75362.1|AF521648_2 PhoR [Pseudomonas syringae]
          Length = 442

 Score =  273 bits (698), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 76/372 (20%), Positives = 154/372 (41%), Gaps = 36/372 (9%)

Query: 444 KRKMEIEVMQLCSILE-------ATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKP 496
           +R+ +    +L ++++       A  D + +++ +G +   NRA   L G        +P
Sbjct: 85  QRRDQRARGRLQAVIDRVQESTAALKDAVIMLDSDGNLEWWNRAAETLLGLKTPQDSGQP 144

Query: 497 FTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSL 556
            +  +            +    LD+   +             + L I       ++ + +
Sbjct: 145 VSNLVRHPRFKEYFEQGSYAEPLDIPSPINDHLR--------IQLYITRY---GNNEHLM 193

Query: 557 TMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            + D++   Q +                + DF+A VSHE+RTPLT I G+ E + +    
Sbjct: 194 LVRDVTRLHQLE--------------QMRKDFIANVSHELRTPLTVICGYLETLLDNVDD 239

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
              NPR+    + + + G  + +++NDLL ++K+E+       +PV++D  +       Q
Sbjct: 240 V--NPRWKRPLSQMQQQGERMQNLLNDLLLLAKLEATDYPSDNQPVAIDTLLRSIKGDAQ 297

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
             + ++   I      ++  +      ++    N++ NA+ +TP GG + I     +   
Sbjct: 298 ALSGQRNQTISLEIEADV-ALKGSEAELRSAFSNLIFNAVKYTPDGGSVKIRWWANAAG- 355

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
             L V+D+GVG+ N  L +  + F ++  S+     GTGLGL + K ++  +     I S
Sbjct: 356 AHLSVQDSGVGIDNKHLPRLTERFYRVDTSRNASTGGTGLGLAIVKHVLLRHRASLEINS 415

Query: 797 TPAKGTLIEIIF 808
               G+     F
Sbjct: 416 VLGHGSTFTCHF 427


>gi|254239958|ref|ZP_04933280.1| hypothetical protein PA2G_00591 [Pseudomonas aeruginosa 2192]
 gi|126193336|gb|EAZ57399.1| hypothetical protein PA2G_00591 [Pseudomonas aeruginosa 2192]
          Length = 651

 Score =  273 bits (698), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 73/260 (28%), Positives = 123/260 (47%), Gaps = 11/260 (4%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E +Q   +L  A++ AE+ +  KSDFLA +SHE+RTP+  ++G  ++++           
Sbjct: 244 EQEQAIGQLISAREEAEQANRAKSDFLAMMSHELRTPMNGVLGMLQLLETTEQTR----E 299

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             EY      S   +L ++ND+LD S+IE G + L   P +L E V  +  + Q  A ++
Sbjct: 300 QAEYTALATESTEHLLKVINDILDFSRIERGALELECIPFNLLELVQGSALVFQHSAQQR 359

Query: 683 RILIRTSFANNI--PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----E 736
            + +       +    +  D   ++QI +N+L NA+ FT  G  I +S    + +     
Sbjct: 360 GLALELQIQAGLENIEVCGDPTRIRQILVNLLGNALKFTEEGA-IHLSLEWQALDHDVLW 418

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           +   V D+G+G++   LE     F Q  +S   R  GTGLGL +A+ + +   G     S
Sbjct: 419 LTCAVHDSGIGISPERLEHMFDAFQQADSSISRRYGGTGLGLAIARTLAERMGGTLQAES 478

Query: 797 TPAKGTLIEIIFPLYDTSHP 816
               G+   +  PL     P
Sbjct: 479 KEGSGSTFTLEIPLPFQQSP 498


>gi|310642322|ref|YP_003947080.1| sensor protein [Paenibacillus polymyxa SC2]
 gi|309247272|gb|ADO56839.1| Sensor protein [Paenibacillus polymyxa SC2]
          Length = 476

 Score =  273 bits (698), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 69/252 (27%), Positives = 120/252 (47%), Gaps = 8/252 (3%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E  +  + L++  +   + +  K DF++ +SHE+RTPLT+I G+SE + +  + P     
Sbjct: 220 ELGELASTLNYMAQEIVRTNQIKDDFISSISHELRTPLTSIKGWSETLNSGGYDP---EE 276

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
                  I +  + ++ +V ++LD SK+E   M L    V L E + E +  V   A  K
Sbjct: 277 TKIGMQIISKETDRLIGLVEEILDFSKLEQNAMKLVMGTVDLRELLQEIMLNVWAKAEMK 336

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
           +I ++         +  D   +KQ+ LNI+ NAI F+     I +S        + + V+
Sbjct: 337 QIKLQLDSEETAYLVHGDGNRLKQVFLNIVDNAIKFSHESSIIYLSLQRV-KGNIEISVQ 395

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG+G++   L +    F Q+      +  GTGLGL +++  V+ + G+  I S    GT
Sbjct: 396 DTGIGISEENLARVRDRFFQVD----HQNGGTGLGLAISQQFVERHHGQMLIRSELGAGT 451

Query: 803 LIEIIFPLYDTS 814
            I +  P     
Sbjct: 452 TITVSLPALQAE 463


>gi|154500004|ref|ZP_02038042.1| hypothetical protein BACCAP_03661 [Bacteroides capillosus ATCC
           29799]
 gi|150271602|gb|EDM98859.1| hypothetical protein BACCAP_03661 [Bacteroides capillosus ATCC
           29799]
          Length = 821

 Score =  273 bits (698), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 76/317 (23%), Positives = 142/317 (44%), Gaps = 13/317 (4%)

Query: 513 LTEILSLDLRQTLEKITLGSTKEEKLL-SLRIIIKKLP--FSSCYSLTMHDISEWKQEKN 569
           L  I         +       +  ++   + I              L   D+   K+++ 
Sbjct: 367 LESIRQRVSEHIADYGGDYRRRFGEIYKWVNIRTLYDEKLAPDEVILCFRDVDIEKRQQL 426

Query: 570 KLSHAKKIAEKE----SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           + +   + A +     +  KSDF + +SH++RTPL AIIGFS++ +        + +  +
Sbjct: 427 QHTIILQEALEAAKKSTKAKSDFFSSMSHDMRTPLNAIIGFSQLAQKN---SDDSGKVRD 483

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           Y   I+ SG  +L ++ND+L++SK+E+GK  L+ +  +L + V EA  + +  A  +   
Sbjct: 484 YMQKIEFSGKQLLALINDILELSKMEAGKNALNNQRFNLKKYVEEAADIFREQAEHQGKR 543

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH---TSNEEVILRVR 742
                  +   ++ D   + QI  N+LSN++ ++  G +I +         + +  + V 
Sbjct: 544 FTADLDMHNEIVVGDEFKIGQILNNLLSNSLKYSNPGAEIHLEIRQFDFRRHSKYQIVVE 603

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           DTG+GM+   LE    P+ +          GTGLG+P+ K++V    G+  + ST  KG+
Sbjct: 604 DTGIGMSRQFLEHLFDPYSRETCFTSAATVGTGLGMPIVKSLVQQMSGEISVESTLGKGS 663

Query: 803 LIEIIFPLYDTSHPHDC 819
              +  PL       D 
Sbjct: 664 KFTVTLPLEAVHIEEDS 680


>gi|90577498|ref|ZP_01233309.1| sensor protein LuxQ [Vibrio angustum S14]
 gi|90440584|gb|EAS65764.1| sensor protein LuxQ [Vibrio angustum S14]
          Length = 576

 Score =  273 bits (698), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 93/376 (24%), Positives = 165/376 (43%), Gaps = 24/376 (6%)

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
                +  +L++  DG             +     ++     +I     +  L+Q  P  
Sbjct: 83  ATRESIQQLLDSLVDG----------HYISGCHITIYPADNINISGSYSSGRLQQWEPPE 132

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKL-LSLRIIIKKLPFSSCYSLTMHDISE---- 563
                  +           I     K   L + +     +LP    +     ++      
Sbjct: 133 ELESTNSLWDKSGHTLWINIINNRGKIGVLAVRIICTDDRLPAIQKHMALFGELFRSAIG 192

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            +   N+   AKK AE       DFLA ++HE+RTPL  ++G +E++++    PL N + 
Sbjct: 193 RQITFNQAIDAKKRAEDSEQSTRDFLAMINHELRTPLNGLLGAAELLQDT---PLDNDQQ 249

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
                 ++ SG L+  I+NDLLD SKI +G + L  +P        +   +    ++EKR
Sbjct: 250 K-LLTTLNHSGELLRAIINDLLDYSKINAGMLELIEKPFDCHLLAVKLEDIFTHRSHEKR 308

Query: 684 ILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-SNEEVILRV 741
           +     ++N++P+I + D   +KQI +N++SNAI FTP+G    +       N+ +   V
Sbjct: 309 LDFNIYYSNDLPKIFIGDEDRIKQIFVNLISNAIKFTPAG---FVHAKLWWQNKHLQFTV 365

Query: 742 RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKG 801
           +D+G G+ + +  K  KPF Q+ N+ +   EGTGLGL + K + +   G   + S+  +G
Sbjct: 366 KDSGCGIDHSDQHKLFKPFSQVDNTSKRSHEGTGLGLVICKQLCEQMGGSIRVESSLGRG 425

Query: 802 TLIEIIFPLYDTSHPH 817
               +  PL  + H H
Sbjct: 426 ACFNVSLPLAISDHAH 441


>gi|325981723|ref|YP_004294125.1| multi-sensor signal transduction histidine kinase [Nitrosomonas sp.
            AL212]
 gi|325531242|gb|ADZ25963.1| multi-sensor signal transduction histidine kinase [Nitrosomonas sp.
            AL212]
          Length = 1222

 Score =  273 bits (698), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 84/644 (13%), Positives = 200/644 (31%), Gaps = 35/644 (5%)

Query: 185  HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSL- 243
             +       +   +  + +F  + E       +   +            L          
Sbjct: 587  RLITERQRVQEQLRESEVRFQVIFEQAAVGIGIVSLEGRWLRVNQKFCDLVGYRHDELTF 646

Query: 244  ----TEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKES 299
                   YA   D   +     L  E S+   ++ +   + +          ++   +  
Sbjct: 647  LTFQEITYAEDLDADLSYVQRTLAGEISTYSLEKRYICKDNSLLWVSLTVSLVRKQDRTP 706

Query: 300  FEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVD 358
              +++           +   N      +      + +         +     +       
Sbjct: 707  DYFITIIQDIQSRKEIEANLNDAKRIANF---GHWRWDLDTNTQIWSEEIFHIFGRDLDL 763

Query: 359  DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
                   ++    A   S+ +A     +   +       A    +     +   +     
Sbjct: 764  PPANYPEVAQYFTAESWSNLSAAVEKCMR--EGVSYHCDAE---VVQPDGSHHWVVARGE 818

Query: 419  EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
               N   + +  +G   +    ++ +  ++    QL   +E     +A+ +R    L+ +
Sbjct: 819  AIRNAEDQIISLHGTVQDITVRKLAEVALQQSQEQLKLFIEYAPAALAMFDRGMHYLACS 878

Query: 479  RAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKL 538
            +     +     ++L          N  +       + L+ ++ ++ E   +      + 
Sbjct: 879  QRWRNDYSLGDRNLLGLSHYDVF-PNIGAEWKAIHRKCLAGEVIRSEEDRYVWVDGTIQW 937

Query: 539  LSLRIIIKKLPFS-SCYSLTMHDISEWKQEKNKLSHAKK-----------IAEKESSHKS 586
            L   +             +   DI++ KQ +  L                  +  +    
Sbjct: 938  LRWEVRPWLTGNIIGGIVIFTEDITQQKQAETALQQLNDDLEKRIAERTAELQALNQSLE 997

Query: 587  DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
             F+  VSH+++ PL  + G+S +++   F  L +     + + I      + +++NDLL 
Sbjct: 998  SFVYSVSHDLKAPLRGVEGYSRLLEEDYFDRLDDE-GRLFISNIRTGVTHMNELINDLLA 1056

Query: 647  ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706
             S++E  +  L    + L   + +A++          I I   F +   ++  D   +  
Sbjct: 1057 YSRME--RCKLQSHELDLTLLIHQALAEYNEEITLHAIEIVADFPS--FKVYGDREGLVL 1112

Query: 707  IALNILSNAIHFTPSGGQIIIST-THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPN 765
               N+L NAI F+       I      + + VIL +RD G+G       +  + F ++  
Sbjct: 1113 TLRNLLGNAIKFSQGTPHPRIEFGACRNKDHVILWIRDNGIGFDMKYNSRIFEIFERLH- 1171

Query: 766  SQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             +     GTG+GL L K  +    G+ +  S+P +G    I  P
Sbjct: 1172 -RLEDYPGTGIGLALVKKAMQRMGGRVWAQSSPGEGATFSIELP 1214



 Score =  258 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 90/425 (21%), Positives = 159/425 (37%), Gaps = 68/425 (16%)

Query: 450 EVMQLCSILEATSDGIAII--NREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
           EV     + EA+     I+  +    I++ N    +  G   + I+          N   
Sbjct: 3   EVSFYRQLFEASPHPYLILRADDNFTIVAVNDKYLEATGIYRQTIVGCGLFDIFPDNPEE 62

Query: 508 VMNHYLTEILSL----------DLRQTLEKITLGSTKEEKLLSLRIIIK--KLPFSSCYS 555
           +++  +T++ +           D+    +            +          +  +    
Sbjct: 63  LVSESVTDLRASLNRVLNKKHPDVMGVQKYDIPLPDNSGHFVLKYWSPVNTPVFGTDGRV 122

Query: 556 LTM----HDISE---------------------------------------------WKQ 566
             +     D++E                                              K 
Sbjct: 123 AYIIHHVEDVTEFVASHECINNDHEAQSKLNKVEARAERMQAEILRRTVEVKEANRSLKS 182

Query: 567 EKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP-RYIE 625
              +LS A +   +    KS+F A VSHE+RTPLT I+   E    Q       P +   
Sbjct: 183 ALEELSVANQRLTELDHLKSEFFANVSHELRTPLTLILAPLEDRLRQLPNKGSKPTKERR 242

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
               + R+  L+   V DLLD++K E+  M ++     + + +    S  +  A+++ I 
Sbjct: 243 EIELMLRNARLLYRHVTDLLDVAKSEANCMEVYSASFDIAQLIRMTASYFEQAAHDRDIT 302

Query: 686 IRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTG 745
           +    +     I +D   ++++ LN+LSNA  FTP  G I +S T T N+ V + V+DTG
Sbjct: 303 LNI-ISPRTLVIESDSEKLQRVLLNLLSNAFKFTPDNGCITLSLTSTQND-VRIDVQDTG 360

Query: 746 VGMTNYELEKAMKPFGQIPNSQ--QIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
            G+     E+  + F ++ N+        GTGLGL + K  VD   GK  +  +P  G L
Sbjct: 361 PGIPMAMRERVFERFTRVENATAANRNYGGTGLGLAIVKDFVDLLGGKVTLEDSPGGGAL 420

Query: 804 IEIIF 808
            +I+F
Sbjct: 421 FKIVF 425



 Score = 91.2 bits (225), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 75/219 (34%), Gaps = 7/219 (3%)

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPE 426
             +L    +      + ++  R     I     + T + +    L +  +  ++    P 
Sbjct: 517 DVILCDAMMPVMGGYQMILALRQYPHLIDVPVIMLTARVDEALRLELLRLGVQEYLNKPF 576

Query: 427 NM--PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
            +   +  I     + +  + ++    ++   I E  + GI I++ EG  L  N+    L
Sbjct: 577 VVDELRARINRLITERQRVQEQLRESEVRFQVIFEQAAVGIGIVSLEGRWLRVNQKFCDL 636

Query: 485 FGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRII 544
            GY  +++    F              Y+   L+     T         K+  LL + + 
Sbjct: 637 VGYRHDELTFLTFQEITYAEDLDADLSYVQRTLA-GEISTYSLEKRYICKDNSLLWVSLT 695

Query: 545 IKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAE 579
           +  +         +   + DI   K+ +  L+ AK+IA 
Sbjct: 696 VSLVRKQDRTPDYFITIIQDIQSRKEIEANLNDAKRIAN 734



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/444 (8%), Positives = 123/444 (27%), Gaps = 40/444 (9%)

Query: 89   IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNH-IGDLLKRQ-NTWYGK 146
            +   G    ++++    +G    ++  +   +++    +D +   +   L  + +T+  +
Sbjct: 620  VSLEGRWLRVNQKFCDLVGYRHDELTFLTFQEITYAEDLDADLSYVQRTLAGEISTYSLE 679

Query: 147  TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH 206
                  + + L+V + ++   +  ++R    F    I+   +   +  A      +  + 
Sbjct: 680  KRYICKDNSLLWVSLTVSL--VRKQDRTPDYF--ITIIQDIQSRKEIEANLNDAKRIANF 735

Query: 207  LH---EIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLT 263
             H   ++        +E + IF +    P          + +Y+  +     +       
Sbjct: 736  GHWRWDLDTNTQIWSEEIFHIFGRDLDLPPANYPE----VAQYFTAESWSNLSAAVEKCM 791

Query: 264  SEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPS----LSAYFDEGE 319
             E  S     +    + + +        ++N   +           +          + +
Sbjct: 792  REGVSYHCDAEVVQPDGSHHWVVARGEAIRNAEDQIISLHGTVQDITVRKLAEVALQQSQ 851

Query: 320  NLTPETVDKCPIPFFVYSHGNL-FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDN 378
                  ++  P    ++  G      +  +         + +         L    +  N
Sbjct: 852  EQLKLFIEYAPAALAMFDRGMHYLACSQRWRNDYSLGDRNLLG--------LSHYDVFPN 903

Query: 379  NAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDV 438
               +   ++R         +      W       + +                    +  
Sbjct: 904  IGAEWKAIHRKCLAGEVIRSEEDRYVWVDGTIQWLRWEVRPWLTGNI-IGGIVIFTEDIT 962

Query: 439  DTRINKRKMEIEVMQLC-SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
              +  +  ++     L   I E T++          + + N+++   F Y V   L+ P 
Sbjct: 963  QQKQAETALQQLNDDLEKRIAERTAE----------LQALNQSLES-FVYSVSHDLKAPL 1011

Query: 498  TVFLEQNTPSVMNHYLTEILSLDL 521
               +E  +  +   Y   +     
Sbjct: 1012 RG-VEGYSRLLEEDYFDRLDDEGR 1034


>gi|109898414|ref|YP_661669.1| PAS/PAC sensor signal transduction histidine kinase
           [Pseudoalteromonas atlantica T6c]
 gi|109700695|gb|ABG40615.1| PAS/PAC sensor signal transduction histidine kinase
           [Pseudoalteromonas atlantica T6c]
          Length = 398

 Score =  273 bits (698), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 69/376 (18%), Positives = 160/376 (42%), Gaps = 31/376 (8%)

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
            +L ++L A  D + II+  G I   N A  ++FGY V++++ +   + + +      + 
Sbjct: 19  AKLNALLNAAVDAMIIIDHTGTIELFNAAAQRMFGYSVQEVIGQNIKMLMPEPYRKEHDQ 78

Query: 512 YLTEILSLDLRQT--LEKITLGSTKEEKLLSLRIIIKKLPFSSC--YSLTMHDISEWKQE 567
           YL   +  +  +   + +      K+ ++  + + + ++  SS   +   + DIS+  Q 
Sbjct: 79  YLDNYMRTNQARIIGIGREVKACKKDGEIFPIELSVGEVKESSHKQFVGIIRDISDQVQA 138

Query: 568 KNKLSHAKKIAEKESSH--KSDFLARVSHEIRTPLTAIIGFSEV----IKNQRFGPLGNP 621
           ++     ++     +      +  A ++HEI  PL+A+  +++     ++ +      + 
Sbjct: 139 RSDAIANRERLAHVTRLSTMGEMAAGIAHEINQPLSAVSSYAQACKNLLQRENSLANASQ 198

Query: 622 RYI--EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL--VQL 677
           +    +    I       ++++  L +  K    K N   E ++ ++ + + I L  V  
Sbjct: 199 KQKLTDTLEKISNQALRAVEVIRRLREFVK----KRNTEREYINFNDLIQDTIDLAKVDT 254

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSG--GQIIISTTHTSNE 735
              +  I +    A   P +L D   ++Q+  N++ NAI          ++I T   + +
Sbjct: 255 RLLDHGIKLTLCNAPA-PCLLVDQVQLQQVLFNLIRNAIDAMEDQPSAPVMIHTKWINEQ 313

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            + + + DTG G+T     +   PF     S      G G+GLP+ ++++ ++ G+    
Sbjct: 314 YLEVSICDTGYGITEENRARLFHPFFTTKTS------GMGMGLPICQSIIQSHGGELK-H 366

Query: 796 STPA--KGTLIEIIFP 809
           S P   +G++     P
Sbjct: 367 S-PGSPQGSVFSFTLP 381



 Score = 43.1 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 18/126 (14%), Positives = 42/126 (33%), Gaps = 7/126 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
           ID  G ++  +    +  G    ++IG  +  +    +   ++   D   R N       
Sbjct: 35  IDHTGTIELFNAAAQRMFGYSVQEVIGQNIKMLMPEPYRKEHDQYLDNYMRTNQARIIGI 94

Query: 149 LWPIEG---TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
              ++         PI+L+        +E S  +  GI+         R+      ++ +
Sbjct: 95  GREVKACKKDGEIFPIELSV----GEVKESSHKQFVGIIRDISDQVQARSDAIANRERLA 150

Query: 206 HLHEIK 211
           H+  + 
Sbjct: 151 HVTRLS 156


>gi|284037395|ref|YP_003387325.1| PAS/PAC sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
 gi|283816688|gb|ADB38526.1| PAS/PAC sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
          Length = 784

 Score =  273 bits (698), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 107/548 (19%), Positives = 202/548 (36%), Gaps = 73/548 (13%)

Query: 315 FDEGENLTPETVDKCPIPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAP 373
            +    L+  TV+    P  ++   G +  AN +      Y S D +            P
Sbjct: 8   SENILRLSHSTVENALEPIVLFDRHGRVSRANQAASHQLGYSSPDMLNARFSDFHPEYTP 67

Query: 374 KLSDNNAIK---------PVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
            L D               +   R D         ++ +Q+  +  L        + +Q 
Sbjct: 68  DLYDRLWADLQQYQTLTVDMRQIRKDGANRQVEVGMNFVQFEGQEFLCCFMRDVTERSQL 127

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNR----- 479
                      + +         E  +    S++   +  + I  R  ++   +      
Sbjct: 128 D----------DTLRRISEGTAAETGIDFFQSLVRHLTVALNI--RYAMVTECSNVEKTR 175

Query: 480 ----AV---SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGS 532
               A      L      D+   P  + +                   +   L       
Sbjct: 176 VRTLAFGENESLLENVEYDLAGTPCDIVMRDREFYYPTGVAENFSKASVDSYLG--VPIH 233

Query: 533 TKEEKLL-SLRII-IKKLPFSSCYSLTMHDISE-------WKQEKN-------------- 569
            K  +++  L I   + +     Y   +  ++         K  +               
Sbjct: 234 DKAGEVIGHLSISDPRPMIDHRKYVGILRVLAARCGAEIGRKVAEEKLLQAQEQLEATVL 293

Query: 570 ----KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
               +L+ AK+ AE  +  KS+FLA +SHE+RTPL  I+G++++ K        +P  ++
Sbjct: 294 TRTLQLARAKEEAELANRAKSEFLANMSHELRTPLNGILGYTQLFKRDE---ALSPNQLK 350

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
             + I      +L ++ND+LD++KIE+ K+++   P  L     + I L+ + A +K + 
Sbjct: 351 GVDIIHNCAENLLVLINDVLDLAKIEAQKLDVQTAPFHLTALFQDLIHLIGVRAEQKGLR 410

Query: 686 IRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----EVILR 740
                A ++P  ++ D R ++Q+ LN+L NA+ FT +GG + +     S +     +   
Sbjct: 411 FLADLAPDLPAWVMGDERKLRQVLLNLLGNAVKFTETGG-VTLRVERASTKAQPYRLRFV 469

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V DTG+G+ +  L    KPF Q+  + Q   EGTGLGL +   +V    G   + S   +
Sbjct: 470 VEDTGIGIASDHLAGIFKPFQQVRETGQF-IEGTGLGLSITDQLVQLLGGDLRVSSAIDE 528

Query: 801 GTLIEIIF 808
           GT   ++ 
Sbjct: 529 GTQFRLLL 536



 Score = 46.6 bits (109), Expect = 0.019,   Method: Composition-based stats.
 Identities = 17/121 (14%), Positives = 36/121 (29%), Gaps = 14/121 (11%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D HG +   ++     +G  +  M+  R  D       D  + +   L++  T       
Sbjct: 30  DRHGRVSRANQAASHQLGYSSPDMLNARFSDFHPEYTPDLYDRLWADLQQYQTLTVDMRQ 89

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRG----FGIVHVNRVDNDPRALGKRLDKKFS 205
              +G N  V + +           F  F G       +      +      +R+ +  +
Sbjct: 90  IRKDGANRQVEVGM----------NFVQFEGQEFLCCFMRDVTERSQLDDTLRRISEGTA 139

Query: 206 H 206
            
Sbjct: 140 A 140


>gi|242280860|ref|YP_002992989.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           salexigens DSM 2638]
 gi|242123754|gb|ACS81450.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           salexigens DSM 2638]
          Length = 610

 Score =  273 bits (698), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 87/536 (16%), Positives = 175/536 (32%), Gaps = 51/536 (9%)

Query: 310 SLSAYFDEGENLTPETVDKCPIPFFVYS-HGNLFYANPSFLLLTKYKSVDDIEIAGGLST 368
                  E E       +           +G +   NP    LT +   +  E       
Sbjct: 88  RSEKLARESETEIQTIFNSIGDAVIATDCNGKVTRMNPVARQLTGWSIDEA-EGRPLAEV 146

Query: 369 LLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENM 428
                 ++ +    PV      +  +  S     I  + E    +        N+  +  
Sbjct: 147 FKIVNSVTRHPCASPVDTVLKTKGVVGLSNHTALISRSGEEFH-IADSAAPVFNEKGDIS 205

Query: 429 PQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYP 488
               +  +  +    + ++      L +I+++    +  ++ EG +   N    K+ G  
Sbjct: 206 GTVLVFRDASEEYRQREELRRLRNYLSNIIDSMPSVLVGVDAEGHVTQWNMTAEKVTGIS 265

Query: 489 VEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKL 548
             D   K           +     + E +        E+ T           + I     
Sbjct: 266 AGDAQGKSLVSVFP--RMASEMDKIRETIRTRKPCCEERKTRQGESGTCYEDVTIFPLIA 323

Query: 549 PFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE 608
                  + + D++E    +  +  ++K+            A ++HEI  PL AI+G S+
Sbjct: 324 NGVDGAVIQIDDVTERCNLEQMMIQSEKMM-----SVGGLAAGMAHEINNPLAAIVGNSQ 378

Query: 609 VIKNQRFGPLGN------------PRYIEYANY---------IDRSGNLVLDIVNDLLDI 647
            I N+ +  L                  EY +          I  S N    IV+++L  
Sbjct: 379 NILNRIYKDLDKNHETACECNVDLENIREYLSRRDVPKMLNGISESCNRAATIVSNMLRF 438

Query: 648 SKIESGKMNLHFEPVSLDEAVSEAISL------VQLYANEKRILIRTSFANNIPRILADL 701
           S+    K    F   +L E ++  + L      ++   + ++I I   +++ +  ++ + 
Sbjct: 439 SR----KSERKFGECNLAELMNNTLELAANDYDLKSEYDFRKIEIIKEYSSELSSVVCEE 494

Query: 702 RSVKQIALNILSNAIHFTPSGGQII-----ISTTHTSNEEVILRVRDTGVGMTNYELEKA 756
             ++Q+ LN+L N          +      I          ++ V D G GM     ++ 
Sbjct: 495 NELQQVFLNLLKNGAQAMMEKEYVEDKPCFILRLKKDGHMAVIEVEDNGPGMEEDVRKRV 554

Query: 757 MKPFGQIPNSQQIRGEGTGLGLPLAKAMV-DANMGKFYIFSTPAKGTLIEIIFPLY 811
            +PF     S +  G GTGLGL ++  ++ D + G   + S P   T   I  P+ 
Sbjct: 555 FEPFY----STKRVGSGTGLGLSVSYFIITDQHKGLMEVSSVPGSWTRFGIKIPIS 606



 Score = 44.2 bits (103), Expect = 0.093,   Method: Composition-based stats.
 Identities = 25/199 (12%), Positives = 62/199 (31%), Gaps = 10/199 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP----NNHIGDLLKRQNTW- 143
            D +G +  ++    +  G    +  G  L +V  I++        + +  +LK +    
Sbjct: 114 TDCNGKVTRMNPVARQLTGWSIDEAEGRPLAEVFKIVNSVTRHPCASPVDTVLKTKGVVG 173

Query: 144 -YGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
               T L    G   +  I  +A P+++   + SG     +      +   R   +RL  
Sbjct: 174 LSNHTALISRSGEEFH--IADSAAPVFNEKGDISGT--VLVFRDASEEYRQREELRRLRN 229

Query: 203 KFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLL 262
             S++ +           +  +         +   +   +  +        + +E   + 
Sbjct: 230 YLSNIIDSMPSVLVGVDAEGHVTQWNMTAEKVTGISAGDAQGKSLVSVFPRMASEMDKIR 289

Query: 263 TSEESSLPEQEDFHTINLN 281
            +  +  P  E+  T    
Sbjct: 290 ETIRTRKPCCEERKTRQGE 308


>gi|87309014|ref|ZP_01091152.1| sensory transduction histidine kinase [Blastopirellula marina DSM
           3645]
 gi|87288357|gb|EAQ80253.1| sensory transduction histidine kinase [Blastopirellula marina DSM
           3645]
          Length = 618

 Score =  273 bits (698), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 84/252 (33%), Positives = 139/252 (55%), Gaps = 6/252 (2%)

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           +E K    +L  A + AE  +  KS+FLA +SHEIRTP+TAIIG++E ++          
Sbjct: 195 TELKLTNEQLVEASRAAEAANRSKSEFLANMSHEIRTPMTAIIGYAEELRETGEIERAPK 254

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
             +   + I R+G+ +L ++ND+LD+SKIE+GK++++ +P S    VS+ ++L+ L A++
Sbjct: 255 ERVFALDTILRNGHHLLQVINDVLDLSKIEAGKLDVYMQPASPVRIVSDVLALMHLRASQ 314

Query: 682 KRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH----TSNEE 736
           K + +   F   +P  I+ D+  ++QI +N++ NAI FT  G  + + T      + N  
Sbjct: 315 KGLRLENEFCGPLPETIVTDVTRLRQILINLIGNAIKFTDKG-TVSLRTKLIDIGSDNPR 373

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           +   V D+G+GMT  EL +   PF Q  NS   R  GTGLGL ++  + +   G     S
Sbjct: 374 LEFEVVDSGIGMTEDELRRVFVPFEQANNSMSRRYGGTGLGLSISIRLTELLGGSMRCES 433

Query: 797 TPAKGTLIEIIF 808
           +   G+      
Sbjct: 434 SLGHGSYFHFTI 445


>gi|212639804|ref|YP_002316324.1| signal transduction histidine kinase [Anoxybacillus flavithermus
           WK1]
 gi|212561284|gb|ACJ34339.1| Signal transduction histidine kinase [Anoxybacillus flavithermus
           WK1]
          Length = 469

 Score =  273 bits (698), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 71/250 (28%), Positives = 117/250 (46%), Gaps = 5/250 (2%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E  Q     +       KE   K +FLA VSHE+RTPL+ + G+SE + +         +
Sbjct: 223 EIGQLAKAFNQMAHALAKEDERKKEFLANVSHELRTPLSYVKGYSEALLDGVI--KEEAQ 280

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             +Y   I R  + +  +V DLLD++++E G   L   P S+ + V E I   +    EK
Sbjct: 281 QKKYVRLIHREASRMQRLVRDLLDLAQLE-GTYPLVRTPFSIAQLVEETIEKYEPMLQEK 339

Query: 683 RILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVR 742
            I       ++   +  D   ++Q+  N+L NA+ +TPS G I +           L + 
Sbjct: 340 NIR-LLLDLDHDLIVDGDPDRIEQVLQNVLDNALRYTPSFGTISLR-AVNKQPMCELIIA 397

Query: 743 DTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGT 802
           D+G GM+  ++E+  + F +   S+     GTGLG+ + K ++  + G     S   KGT
Sbjct: 398 DSGCGMSKEDIERLGERFFRADRSRSREHGGTGLGIAIVKQIIKLHGGSIRFESEQGKGT 457

Query: 803 LIEIIFPLYD 812
            + +  PLY 
Sbjct: 458 TVYMELPLYH 467


>gi|158338757|ref|YP_001519934.1| two-component hybrid sensor and regulator [Acaryochloris marina
           MBIC11017]
 gi|158308998|gb|ABW30615.1| two-component hybrid sensor and regulator, putative [Acaryochloris
           marina MBIC11017]
          Length = 834

 Score =  273 bits (698), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 76/263 (28%), Positives = 134/263 (50%), Gaps = 16/263 (6%)

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           Q    L  A++ A++ +  KS+FLA +SHE+RTPL AI+GFS+++   +       +   
Sbjct: 352 QRTAALEAARQKADQANRAKSEFLASMSHELRTPLNAILGFSQLMSEDQAIST---QQQN 408

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
               I+RSG  +L+++ND+LD+SKIE+G+  L+    +L   +     +  L A  K + 
Sbjct: 409 TLQIINRSGEHLLELINDVLDMSKIEAGRTTLNPADFNLHGLLQSLYDMFNLKAQSKGLK 468

Query: 686 IRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE-----EVIL 739
           +     +++P+ I  D   ++Q+ +N++ NAI FT +G ++ I+             +  
Sbjct: 469 LALKLDDHLPQFIHGDESKLRQVLINLIGNAIKFTEAG-EVSITAGMAEQTGDGELSLTF 527

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V D+G G+   E+E+   PF Q  +SQ    +GTGLGL ++   V    G   + S  +
Sbjct: 528 AVEDSGPGIAPDEVERIFDPFIQAKSSQA--QQGTGLGLAISAQFVRLMKGDISVCSKLS 585

Query: 800 KGTLIEIIF----PLYDTSHPHD 818
           +G++         PL   +   D
Sbjct: 586 RGSIFRFTIGCQTPLSSVAPRAD 608


>gi|312881159|ref|ZP_07740957.1| signal transduction histidine kinase [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309371051|gb|EFP98505.1| signal transduction histidine kinase [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 731

 Score =  273 bits (698), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 76/252 (30%), Positives = 123/252 (48%), Gaps = 14/252 (5%)

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           L   K  A+  +  KS FLA +SHEIRTP+  ++G +++++             +Y   +
Sbjct: 339 LEEEKVKAQASTKAKSAFLAVLSHEIRTPMNGVLGTAQILQKTEM----TDEQRKYLKTL 394

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
             SG  ++ ++N++LD SK+E G + L  +P  L+  +    S+      EK +  +   
Sbjct: 395 IDSGEHMMTLLNEILDFSKVEQGHLELEHKPFPLESVLGSINSVYNTLCCEKGLQFKVY- 453

Query: 691 ANNIP---RILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT---SNEEVILRVRDT 744
            +++P       D   ++QI  N+L+NA+ FT  G  + +S T         + LRVRDT
Sbjct: 454 -SDVPIERWYRFDKARLRQILFNLLNNAVKFTSRG-YVEVSFTEEIIDDQTYLRLRVRDT 511

Query: 745 GVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLI 804
           G+G+     EK  KPF Q  +S   R  GTGLGL +   + +   GK  + S    G+  
Sbjct: 512 GIGIPKEAREKVFKPFEQAESSTTRRFGGTGLGLAIVNQLCELMGGKIQLTSEVGIGSCF 571

Query: 805 EIIFPLYDTSHP 816
           EI F   + S P
Sbjct: 572 EISF-AVEISEP 582


>gi|253702042|ref|YP_003023231.1| Hpt sensor hybrid histidine kinase [Geobacter sp. M21]
 gi|251776892|gb|ACT19473.1| Hpt sensor hybrid histidine kinase [Geobacter sp. M21]
          Length = 718

 Score =  273 bits (698), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 67/248 (27%), Positives = 121/248 (48%), Gaps = 10/248 (4%)

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           Q   +L  A   AE  ++ KS FLA +SHEIRTP+  +IG ++++         +     
Sbjct: 197 QRTTELEEALVKAEAATAAKSVFLANMSHEIRTPMNGVIGLAKLLMETPL----DEVQQG 252

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           Y   +      +L I+N++LD+SK+E+G + L      L   +  ++    L   +K + 
Sbjct: 253 YMESLSDCAENLLTIINEILDVSKVEAGMITLEAVVFDLRRFLDRSLQPFVLRGQKKGVR 312

Query: 686 IRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----VILR 740
           +     + +P ++  D   ++Q+  N+L NA+ FT  G  I ++   T + E    +   
Sbjct: 313 VHLEADSGLPELMVGDPVRLRQVLANLLGNALKFTQQGS-ITLTAALTGSGENRVALKFS 371

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V DTG+G+    +E   + F Q  +S      GTGLGL ++K++V+   G+  + ST  +
Sbjct: 372 VADTGIGIAAEAMEVIFEKFSQADSSTTRLYGGTGLGLSISKSLVELMGGELSVQSTLGE 431

Query: 801 GTLIEIIF 808
           G++     
Sbjct: 432 GSVFSFSI 439


>gi|218676813|ref|YP_002395632.1| Signal transduction histidine kinase [Vibrio splendidus LGP32]
 gi|218325081|emb|CAV26919.1| Signal transduction histidine kinase [Vibrio splendidus LGP32]
          Length = 1010

 Score =  273 bits (698), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 81/245 (33%), Positives = 128/245 (52%), Gaps = 7/245 (2%)

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
              + A+  AE+ S  KS FLA +SHEIRTP+  ++G + ++K+    PL       YA+
Sbjct: 454 ENHAKARNAAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLKDTGLDPL----QSGYAD 509

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I+RSG  +L I+ND+LD SKIE+G + +      L + V +   L++  A EK++    
Sbjct: 510 IINRSGKNLLAILNDVLDYSKIEAGHLEIRTASFDLYQMVKDTYQLMEGRAAEKKLNFDF 569

Query: 689 SFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVILRVRDTGV 746
              +N+ R    D+  + QI  N++ NAI FT +G   I IS        V+  V DTGV
Sbjct: 570 HIESNVQRYWRGDVTRISQILNNLVGNAIKFTETGSVDIFISLDIEDENRVMFEVSDTGV 629

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G+ + E       F Q  + +  +  GTGLGL ++K+++ A  G   + S   +G+    
Sbjct: 630 GIDSKEQACLFDAFTQTGSGRN-KTGGTGLGLAISKSIMQAMNGDIGVHSEEGEGSQFWF 688

Query: 807 IFPLY 811
             PL+
Sbjct: 689 SVPLF 693


>gi|148559727|ref|YP_001258977.1| sensory box histidine kinase/response regulator [Brucella ovis ATCC
           25840]
 gi|148370984|gb|ABQ60963.1| sensory box histidine kinase/response regulator [Brucella ovis ATCC
           25840]
          Length = 945

 Score =  273 bits (698), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 98/625 (15%), Positives = 207/625 (33%), Gaps = 51/625 (8%)

Query: 212 KGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271
           +G      + Y   +  +    +R  ++V +     +     L       L+++E     
Sbjct: 192 RGQIVYANQAYARMTGATDADGIRPLDQVLASEPAASDAIYRLTNAVRDGLSAQEEVRIS 251

Query: 272 QEDFHTINLNQY--TKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGE-----NLTPE 324
                  N +      +     L+  ++     ++ +         ++            
Sbjct: 252 GGLSRGANGSLAPVWYRIKARALEGGAEFKGPLVAWQVADISEERAEQERFFQELQEAIN 311

Query: 325 TVDKCPIPFF-VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKP 383
            +D  P  FF     G + Y N +               +  L+ ++    ++       
Sbjct: 312 HLDHAPAGFFSANPAGRIIYLNATLAEWLGVDLTQFTPGSLTLNDIVAGSGMA------L 365

Query: 384 VMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRIN 443
           +   +++      +     +      SLA+ F    +  +         I  +  +   +
Sbjct: 366 IKAVKAEPGTSRNTVIDLDLIKRNGQSLAVRFYHRVQTARDGMPGTTRTIVLDRAEGDDS 425

Query: 444 KRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG--YPVEDILRKPFTVFL 501
                   ++      +    IA ++ EG  L TN     +F      + I R+     +
Sbjct: 426 SVAQRSAEVRFTRFFNSAPMAIAAVDAEGHTLRTNARFLDIFSGVVDRDAIDRRVKLENV 485

Query: 502 EQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPF----SSCYSLT 557
                    +                 T+    EE+ +   +                ++
Sbjct: 486 VHERDRETFNKALAAAFAGQASISPVDTVLPGNEERHIRFYMSPVTDLGGEAAEEAAVIS 545

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
             + +E K  +N+++ ++K+              ++H+    LTAII  S+++       
Sbjct: 546 AVETTEQKALENQMAQSQKM-----QAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNH--R 598

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
             +P + +  N I ++ N    +V  LL  S+    +  L  E + L + +++ + ++  
Sbjct: 599 ASDPSFPDIMN-IKQNANRAASLVRQLLAFSR----RQTLRPEVLDLTDVLAD-LRMLLA 652

Query: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTT------- 730
               K I ++     ++  + ADL   +Q+A+N+  NA    P GGQI + T        
Sbjct: 653 RLVGKDIELKIDHGRDLWPVKADLGQFEQVAVNLAVNARDAMPEGGQITLRTRNIPAADA 712

Query: 731 -------HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKA 783
                      + V+  V DTG G+    LEK  +PF          G+GTGLGL +   
Sbjct: 713 AKLHYRDLPEADYVVFEVEDTGTGIPADVLEKIFEPFFTTK----EVGKGTGLGLSMVYG 768

Query: 784 MVDANMGKFYIFSTPAKGTLIEIIF 808
           ++    G  Y  S   KGT  +I  
Sbjct: 769 IIKQTGGFIYCDSEVGKGTTFKIFL 793



 Score = 73.1 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/394 (11%), Positives = 106/394 (26%), Gaps = 20/394 (5%)

Query: 164 AALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSH-LHEIKKGHSSVEKEKY 222
           +A  IY   R     R  GI++ +R++    A+G   +++ +  L +  +     E+   
Sbjct: 28  SANRIYLDARASVPARRAGILNEDRIELPDDAIGASAERRSTRDLRKPSRAGIQHERAVG 87

Query: 223 DIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQ 282
            +  Q               L          L+     +L    + +         +   
Sbjct: 88  LMSRQTDNT-------YPKPLVMPKRGPSAALRLLIVGILLMGAAFIYFLFRDQLGDGFA 140

Query: 283 YTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNL 341
                    +       F            +   + ++L    +D  P    +    G +
Sbjct: 141 LVLMGVLSMVG-----VFYLFGAATGLIQFSQRSDHQDLAHSFMDTQPEGTVISDPRGQI 195

Query: 342 FYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLH 401
            YAN ++  +T     D I     +  L   P  SD        +               
Sbjct: 196 VYANQAYARMTGATDADGIRPLDQV--LASEPAASDAIYRLTNAVRDGLSAQEEVRISGG 253

Query: 402 TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLC-SI--L 458
             +    +   + +    +A +         +  +  D    + + E    +L  +I  L
Sbjct: 254 LSRGANGSLAPVWYRIKARALEGGAEFKGPLVAWQVADISEERAEQERFFQELQEAINHL 313

Query: 459 EATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFT-VFLEQNTPSVMNHYLTEIL 517
           +    G    N  G I+  N  +++  G  +        T   +   +   +   +    
Sbjct: 314 DHAPAGFFSANPAGRIIYLNATLAEWLGVDLTQFTPGSLTLNDIVAGSGMALIKAVKAEP 373

Query: 518 SLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
                  ++   +    +   +     ++     
Sbjct: 374 GTSRNTVIDLDLIKRNGQSLAVRFYHRVQTARDG 407



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 47/420 (11%), Positives = 103/420 (24%), Gaps = 38/420 (9%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSD--ILHIDPNNHIGDLLKRQNTWYGKT 147
           D  G +   ++   +  G      I   L  V        D    + + ++   +   + 
Sbjct: 190 DPRGQIVYANQAYARMTGATDADGI-RPLDQVLASEPAASDAIYRLTNAVRDGLSAQEEV 248

Query: 148 TL-----WPIEGTNLYVPIDLAALPIYSRNREFSG-FRGFGIVHVNRVDNDPRALGKRLD 201
            +         G+   V   + A  +     EF G    + +  ++    +     + L 
Sbjct: 249 RISGGLSRGANGSLAPVWYRIKARALEGGA-EFKGPLVAWQVADISEERAEQERFFQELQ 307

Query: 202 KKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLR------MKNKVSSLTEYYAHKDDVLK 255
           +  +HL     G  S       I+   +    L           ++           ++K
Sbjct: 308 EAINHLDHAPAGFFSANPAGRIIYLNATLAEWLGVDLTQFTPGSLTLNDIVAGSGMALIK 367

Query: 256 TEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN--NSKESFEYLSHRNHPSLSA 313
             K    TS  + +                     T ++          L        S 
Sbjct: 368 AVKAEPGTSRNTVIDLDLIKRNGQSLAVRFYHRVQTARDGMPGTTRTIVLDRAEGDDSSV 427

Query: 314 YFDEGENLTPETVDKCPIPF-FVYSHGNLFYANPSFLLLT-KYKSVDDIEIAGGLSTLLD 371
                E       +  P+    V + G+    N  FL +       D I+    L  +  
Sbjct: 428 AQRSAEVRFTRFFNSAPMAIAAVDAEGHTLRTNARFLDIFSGVVDRDAIDRRVKLENV-V 486

Query: 372 APKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQN 431
             +  +         +    +       L     N E  +     P              
Sbjct: 487 HERDRETFNKALAAAFAGQASISPVDTVL---PGNEERHIRFYMSPVTDLGGEAAEEAAV 543

Query: 432 GIEPEDVDTRINKRKMEIEVMQLCSI----------LEATSDGIAIINREGIILSTNRAV 481
               E  + +  + +M  +  ++ ++                 I + +    +L TN   
Sbjct: 544 ISAVETTEQKALENQM-AQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSD---LLLTNHRA 599



 Score = 48.5 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 45/134 (33%), Gaps = 12/134 (8%)

Query: 456 SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHY-LT 514
           S ++   +G  I +  G I+  N+A +++ G    D   +P    L     +    Y LT
Sbjct: 177 SFMDTQPEGTVISDPRGQIVYANQAYARMTGATDAD-GIRPLDQVLASEPAASDAIYRLT 235

Query: 515 EILSLDLRQTLEKITLG---STKEEKLLSLRIIIKKLPFSSC-------YSLTMHDISEW 564
             +   L    E    G         L  +   IK               +  + DISE 
Sbjct: 236 NAVRDGLSAQEEVRISGGLSRGANGSLAPVWYRIKARALEGGAEFKGPLVAWQVADISEE 295

Query: 565 KQEKNKLSHAKKIA 578
           + E+ +     + A
Sbjct: 296 RAEQERFFQELQEA 309


>gi|237713589|ref|ZP_04544070.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262406312|ref|ZP_06082861.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294646555|ref|ZP_06724191.1| PAS domain S-box [Bacteroides ovatus SD CC 2a]
 gi|294806620|ref|ZP_06765454.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b]
 gi|229446311|gb|EEO52102.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262355015|gb|EEZ04106.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292638078|gb|EFF56460.1| PAS domain S-box [Bacteroides ovatus SD CC 2a]
 gi|294446156|gb|EFG14789.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b]
          Length = 541

 Score =  273 bits (698), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 93/497 (18%), Positives = 174/497 (35%), Gaps = 29/497 (5%)

Query: 324 ETVDKCPIPFFVYS---HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
           + +D  P P FV         +Y N    + +   S + I          +         
Sbjct: 56  DILDNLPFPIFVKDIANDFRYYYWNKESAVQSGISSEEAIGHTD-----YEIYGEERGEK 110

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
            + +         +        I  +      +        +   E         +    
Sbjct: 111 YRNIDKELVQEGKV-YRKEEKYITPDGITHDTIAVKSII--SWEGEKRWLLATRWDITQL 167

Query: 441 RINKRKMEIEVMQLC-------SILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDIL 493
           +  +R++     +L          L++   G+  I++   +                 I 
Sbjct: 168 KNYERELVAAKEELEKALKKQKLALKSIDFGLIYIDKNYRVQWEETRQIASLVKGRRYIP 227

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSC 553
            K                   + +                 E     +    K+      
Sbjct: 228 GKICYQTSALRNEPCGQCAFKKAIEQGKIIRHTIRVDDVDFEVTATPVFGDEKETEIIGG 287

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
                 +I+E  +    L  AK+ AE+ +  KS FLA +SHEIRTPL AI+GFSE++   
Sbjct: 288 LLR-FENITEKLKMNRMLQEAKEKAEESNRLKSAFLANMSHEIRTPLNAIVGFSEMVCQT 346

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
                      E+   I  +  L+L +++D+LD+SKIE+G M   F    ++E +     
Sbjct: 347 EEEEEK----QEFVKIISSNNILLLQLIDDILDLSKIEAGTMEFTFAQTDINELMEGICR 402

Query: 674 LVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
            +Q   +   + I  +   N   I  D   + Q+ +N  +NA+ FT  G  I +      
Sbjct: 403 QMQEKNSSPDVQIVFTERANQCIINTDRIRLSQVIINFTNNALKFTSKGS-IEMGYRIEE 461

Query: 734 -NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKF 792
            ++E+   V+DTG+G+   +++K  + F ++ +      +GTGLGL + + +V+   G  
Sbjct: 462 ASDEIYFYVKDTGIGIPADKIDKVFERFVKLNSFI----KGTGLGLAICRVIVERLGGVI 517

Query: 793 YIFSTPAKGTLIEIIFP 809
              S   +G+      P
Sbjct: 518 GAESKEGEGSCFWFKIP 534


>gi|225862628|ref|YP_002748006.1| sensor histidine kinase [Bacillus cereus 03BB102]
 gi|225786705|gb|ACO26922.1| sensor histidine kinase [Bacillus cereus 03BB102]
          Length = 456

 Score =  273 bits (698), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 55/226 (24%), Positives = 108/226 (47%), Gaps = 5/226 (2%)

Query: 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVND 643
            +S+FLA V+HE+RTPLT + G++++   +   P    + + Y + I    + + ++V D
Sbjct: 234 ERSEFLASVAHELRTPLTYVRGYADIALKETTSP---EQRLRYLSIIKDESDYITNLVQD 290

Query: 644 LLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRS 703
           L  ++++E    ++  + V L   ++     V     E+ I +  S    +  +  D + 
Sbjct: 291 LFSLAQMEQHNFSIQVKEVHLHTFLTRISEKVNAMYKERYITVSFSCPPTLL-VNLDEQR 349

Query: 704 VKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQI 763
            +Q+ +NIL+NA   +     I IS     N+ + + + D G G+   +L    + F ++
Sbjct: 350 FEQVVVNILNNAYRHSKEHSHIRISV-IEENKHITITIEDEGEGIPPEDLPHIFERFYRV 408

Query: 764 PNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             ++     GTGLGL + K +V+ + G   + S    G+   I  P
Sbjct: 409 DKARSRATGGTGLGLSIVKEIVELHGGNITVTSEVDHGSCFIISLP 454


>gi|304406471|ref|ZP_07388127.1| multi-sensor signal transduction histidine kinase [Paenibacillus
           curdlanolyticus YK9]
 gi|304344529|gb|EFM10367.1| multi-sensor signal transduction histidine kinase [Paenibacillus
           curdlanolyticus YK9]
          Length = 624

 Score =  273 bits (698), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 83/388 (21%), Positives = 157/388 (40%), Gaps = 24/388 (6%)

Query: 423 QFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVS 482
                +    I    + TR++ R+      +   ++E + D IA+++        NR+  
Sbjct: 215 AVMLGLATLAILGISLMTRMSDRRYRQADQRYKQLVENSIDMIAVLDGN-HWEYINRSGL 273

Query: 483 KLFGYPV-EDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSL 541
           +LF     E+++ K   +FL     +     +    +       E        ++    +
Sbjct: 274 RLFNASEKEEMVGKSIYLFLHPKHHAETARRIGIFEAGKTYPPEELEWFTVCGKKLYTEV 333

Query: 542 RIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
            I    L     + L + DISE K+ +  L +++K+            A ++HEIR PLT
Sbjct: 334 VIASTTLRGRPAFQLIVRDISERKKNEELLINSEKLYVA-----GQLAAGIAHEIRNPLT 388

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
           ++ GF ++I   R           Y + +    N +  IV++LL +SK +          
Sbjct: 389 SLKGFLQLISTGRSNG------RNYFDIMKSELNRIESIVSELLMLSKPQ----VYELTH 438

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
             + + +++ + L++  A+     I                 +KQ+ +N++ NAI     
Sbjct: 439 HDMRQVLNDTVMLLEAQASLHNTEIVVETDPAPLWTFGVGNQIKQVFINVIKNAIEAMED 498

Query: 722 GGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
           GG+I+I++       V+ R+ D G G+   +L K  +PF    +       GTGLGL + 
Sbjct: 499 GGKIVITSRLED-GNVVTRIIDQGPGIPKEQLAKMGQPFYTTKD------RGTGLGLMVT 551

Query: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             +VD + G+    S   +G    I FP
Sbjct: 552 FKIVDNHQGRIQAHSEMGEGATFVISFP 579


>gi|294667422|ref|ZP_06732639.1| histidine kinase-response regulator hybrid protein [Xanthomonas
            fuscans subsp. aurantifolii str. ICPB 10535]
 gi|292602755|gb|EFF46189.1| histidine kinase-response regulator hybrid protein [Xanthomonas
            fuscans subsp. aurantifolii str. ICPB 10535]
          Length = 1191

 Score =  273 bits (698), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 74/253 (29%), Positives = 131/253 (51%), Gaps = 8/253 (3%)

Query: 563  EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
              + +     H +++AE+ S  K+ FLA + HE+RTP+T ++G SE++         + R
Sbjct: 789  RMRAQWQLAQHKRELAEQASLAKTRFLATLGHEVRTPMTGVLGMSELLLQTPL----DGR 844

Query: 623  YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
               YA+ I  +G  +L +VND LD+++IE+GK+ L +    L + V + + LV+  A +K
Sbjct: 845  QQGYASAIQLAGKHLLRLVNDALDLARIEAGKLPLDYRDFDLRQLVGQVVELVRPSAEQK 904

Query: 683  RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTS-NEEVIL 739
            ++       + +P  +  D   V+QI LN+L NA+ FT  G   + ++T      + + +
Sbjct: 905  QLAFHCELDDALPPALHGDASRVQQILLNLLFNAVKFTERGSVHLRVTTLPQHTRQGLRV 964

Query: 740  RVRDTGVGMTNYELEKAMKPFGQIPNSQQ-IRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
             VRDTG GM+  +  +  + F Q   +    R  G+GLGL + + +  A  G   + S  
Sbjct: 965  EVRDTGPGMSAEQRGRLFQRFEQAEGALTLARHGGSGLGLAICRELAAAMGGAVTVASEL 1024

Query: 799  AKGTLIEIIFPLY 811
             +G    +  PL+
Sbjct: 1025 GQGACFVVELPLH 1037


>gi|158522818|ref|YP_001530688.1| PAS/PAC sensor signal transduction histidine kinase [Desulfococcus
           oleovorans Hxd3]
 gi|158511644|gb|ABW68611.1| PAS/PAC sensor signal transduction histidine kinase [Desulfococcus
           oleovorans Hxd3]
          Length = 595

 Score =  273 bits (698), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 70/356 (19%), Positives = 142/356 (39%), Gaps = 24/356 (6%)

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           ++     G+        I S NR  +++ G         P  +         +     ++
Sbjct: 260 VVANMPAGLVTFGPGPEITSCNRRAAEILGMAPCRTDDDPLDMDRLPPPVRQVAD---QV 316

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLTMHDISEWKQEKNKLSHA 574
           +      + E    G    +++L +     +        Y L + D++  ++ + +++ +
Sbjct: 317 VQDGGNVSQEVEVPGPDGVDRVLEIGASPIQDEGGRVSGYLLLIKDLTGMRRLEKEVARS 376

Query: 575 KKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSG 634
           +++A           A V+HEIR PL++I GF+   K +      + +  + A+ +    
Sbjct: 377 RRLA-----AIGKLAAGVAHEIRNPLSSIKGFATYFKEKFS---DSDQDKKTADTMIYEV 428

Query: 635 NLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNI 694
             +   V  LL+ ++     ++L    V   E +  ++ L++     K I          
Sbjct: 429 ERLNRAVTQLLEFARP----VSLEITEVEPGELIEHSLRLMENDFTNKGIESTARIQTTR 484

Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE-VILRVRDTGVGMTNYEL 753
           P I  D   + Q+ LN+  NA+    SGG++ ++ +   N + V + V DTG G+   ++
Sbjct: 485 PVIRTDRDRLNQVLLNLYLNAVDAMESGGRLTVTLSDGDNNDTVTIDVTDTGHGIAEKDM 544

Query: 754 EKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           E+   P+         R  GTGLGL +   +V++  G   + S    GT   I  P
Sbjct: 545 EQIFDPYFTT------RSRGTGLGLAIVYKLVESLGGTITVESREGHGTTFHIRVP 594



 Score = 42.7 bits (99), Expect = 0.25,   Method: Composition-based stats.
 Identities = 26/241 (10%), Positives = 56/241 (23%), Gaps = 8/241 (3%)

Query: 95  LKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIG-DLLKRQNTWYGKTTLWPIE 153
           +   +    + +G    +     L          P   +   +++       +  +   +
Sbjct: 277 ITSCNRRAAEILGMAPCRTDDDPLDMDRLPP---PVRQVADQVVQDGGNVSQEVEVPGPD 333

Query: 154 GTNLYVPIDLAALPIYSRNREFSGF-RGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKK 212
           G +  +  ++ A PI       SG+      +   R      A  +RL         +  
Sbjct: 334 GVDRVL--EIGASPIQDEGGRVSGYLLLIKDLTGMRRLEKEVARSRRLAAIGKLAAGVAH 391

Query: 213 GHS-SVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPE 271
                +   K      +          K +    Y   + +   T+           + E
Sbjct: 392 EIRNPLSSIKGFATYFKEKFSDSDQDKKTADTMIYEVERLNRAVTQLLEFARPVSLEITE 451

Query: 272 QEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPI 331
            E    I  +    +  F      S    +                  NL    VD    
Sbjct: 452 VEPGELIEHSLRLMENDFTNKGIESTARIQTTRPVIRTDRDRLNQVLLNLYLNAVDAMES 511

Query: 332 P 332
            
Sbjct: 512 G 512


>gi|114565936|ref|YP_753090.1| sensory box histidine kinase/response regulator [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
 gi|114336871|gb|ABI67719.1| Hpt sensor hybrid histidine kinase [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 497

 Score =  273 bits (698), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 69/235 (29%), Positives = 122/235 (51%), Gaps = 8/235 (3%)

Query: 581 ESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDI 640
               KS FLA +SHEIRTP+  I+G  +++         + +     + I   G  +L I
Sbjct: 20  ADMAKSQFLANMSHEIRTPIIGILGSLDLLDQSDL----SQQQATNISIIRECGEQLLQI 75

Query: 641 VNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIP-RILA 699
           V+++LD+SKIES  +  + EP +L E +   ++ V      K +  + +  + IP +I+ 
Sbjct: 76  VDNILDVSKIESDPVTPNLEPCNLGELIIATVNRVDTLLKRKGLDFKLNIDSRIPAKIML 135

Query: 700 DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE--EVILRVRDTGVGMTNYELEKAM 757
           D   ++Q+ LN+L N+I FTP G ++ +       +   ++  + DTG+G+ +  +E+  
Sbjct: 136 DKTKLQQVLLNLLYNSIKFTPQG-RVELKAKIQPGDSYRLLFTISDTGIGIPSSFVERVF 194

Query: 758 KPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYD 812
           +PF Q  NS   +  G GLGL + K +++   G+  + S P  GT +    PL +
Sbjct: 195 EPFTQADNSNSRQYGGAGLGLYICKKLLELMEGEISLSSMPGVGTTVSFSIPLIE 249


>gi|254486348|ref|ZP_05099553.1| hypothetical protein RGAI101_1005 [Roseobacter sp. GAI101]
 gi|214043217|gb|EEB83855.1| hypothetical protein RGAI101_1005 [Roseobacter sp. GAI101]
          Length = 654

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 90/404 (22%), Positives = 149/404 (36%), Gaps = 40/404 (9%)

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLF-GYPVEDILRKPFTV 499
           R   +K E     L   +    +G    +    ++  N              +       
Sbjct: 255 RRLAKKKENSHALLAEAVGCIDEGFIAFDDRERLMIVNDKYLAYHSEIADRIVPGMTMEE 314

Query: 500 FLE----QNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYS 555
            L                   ++  LR                  L++   K P      
Sbjct: 315 MLRLSRSHQNGPEELEKREAWIAERLRCFRNPGEPFLHSIGDDFWLKVTEAKTPH-GYTV 373

Query: 556 LTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN--- 612
               D+S  K+ +         AE     K++FL  VSHE+RTPLT I G +  IKN   
Sbjct: 374 GVWTDVSAEKRAQQ-------AAETADWEKTEFLNNVSHELRTPLTVIFGRATFIKNCEK 426

Query: 613 ---------------QRFGPLGNP--RYIEYANY----IDRSGNLVLDIVNDLLDISKIE 651
                             G L +      ++ +     I  S   ++ +V+DLLD +K+ 
Sbjct: 427 LPQFKRIQAALDAEGNNSGDLTDAINDSRKFVSEQGVGIAESAKHMIRLVDDLLDWTKVA 486

Query: 652 SGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNI 711
            G + L    + +DE     +  +Q  A +K + +  S    I    AD   ++QI  N 
Sbjct: 487 RGTLELDVSTLRVDEVAETVVQDLQSDAAKKGLSLSYS-GEGIVEAQADKIRLRQILYNF 545

Query: 712 LSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRG 771
           ++NAI FT +G  I +S       +V+  V DTG G++    EK  + F Q+  S     
Sbjct: 546 VNNAIKFTDAGS-ICLSVRKEV-GKVVFSVTDTGRGISEENREKVFQRFHQVDGSMIRDN 603

Query: 772 EGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSH 815
            G GLGL ++K + + + G   + ST  +G+   +I P  +T+ 
Sbjct: 604 GGLGLGLAISKQLAELHDGYLTLESTLGQGSTFSLILPRAETAA 647


>gi|117618906|ref|YP_855570.1| response regulator/sensor histidine kinase [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117560313|gb|ABK37261.1| response regulator/sensor histidine kinase [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 1142

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 74/262 (28%), Positives = 127/262 (48%), Gaps = 8/262 (3%)

Query: 554 YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQ 613
           Y     +I+  +Q +  L+ AK+ AE  +  K+DFLA +SHEIRTP+  IIG +E ++  
Sbjct: 531 YFHLRQEITRRRQVEADLALAKEAAELAARQKADFLATMSHEIRTPMNGIIGMAEQLRFT 590

Query: 614 RFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAIS 673
                 +P   +    I++    +L ++ ++LD SK+++GKM L      L E +   ++
Sbjct: 591 SL----DPEQRQMVGIINQGAEGLLQLIGNVLDYSKLDAGKMALAPTSFLLRELIDSVLT 646

Query: 674 LVQLYANEKRILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGG---QIIIST 729
           +       K + +     + +  R   D+  +KQ+  N+ SNAI FT  G     I +  
Sbjct: 647 MTSSELQRKGLQLYLRVDDEVGARFYGDVLRLKQVLFNLASNAIKFTERGFIELSIRVEG 706

Query: 730 THTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANM 789
                + ++L V+DTG+GM+     +    F Q   +      GTGLGL +++ +     
Sbjct: 707 ETDEEQWLLLGVQDTGIGMSEDVQARVFNAFEQADGATTRSYGGTGLGLSISQTLATLMG 766

Query: 790 GKFYIFSTPAKGTLIEIIFPLY 811
           G+  + S P  GT I +  PL 
Sbjct: 767 GRLRLESAPGLGTHIGLSIPLA 788


>gi|83310225|ref|YP_420489.1| nodulation protein V [Magnetospirillum magneticum AMB-1]
 gi|82945066|dbj|BAE49930.1| Nodulation protein V [Magnetospirillum magneticum AMB-1]
          Length = 823

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 92/689 (13%), Positives = 214/689 (31%), Gaps = 32/689 (4%)

Query: 137 LKRQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRAL 196
           L R           P+ G     P+ + +  + + +  F+G  G   +  +      + L
Sbjct: 146 LHRDKAADDVQISSPLVGLVTGNPVIIVSRRLTAPDGGFAGVVG-ATIRADAFQAFFQTL 204

Query: 197 GK---RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253
           G     +         +                     P +       +           
Sbjct: 205 GLGEGAIVNLQRADGTMLARQPFRNDAVGAKVDNARFFPAIAEGKPHGAAVTVSPLDGIT 264

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINL-NQYTKKQYFGTLQNNSKESFEYLSHRNHPSLS 312
             T    +       +        ++   + T +            S  ++         
Sbjct: 265 RVTAFRRIDRYGLVVISAIPVDTILDGWRRQTVRMAAMVGIGIVLLSTLFIMLLRRYHNE 324

Query: 313 AYFDEGENLTPETVDKCPIPFFVYSHGNLFYANP-----SFLLLTKYKSVDDIEIAGGLS 367
                    +  T+ +      + S      +N          +        I  A  + 
Sbjct: 325 VEARAELKTSEATLSRAQSVAHIGSWQVDIASNRVRFSEETYRIFGITPGAPISFASVME 384

Query: 368 TLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPEN 427
            +    +    +A+  +M               H I         +              
Sbjct: 385 MIHPDDRQPVQDALAALM----SGGSYDVE---HRIVAAGGELKCVAAKALITNGTDGRP 437

Query: 428 MPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFG 486
               G   +  + +  +  +      L  +    + G    + R     S +  +  +FG
Sbjct: 438 QEILGTIQDITEKKQAEIAIREHQSLLLEVQSVANLGYYDYDIRADRWRS-SPILDAIFG 496

Query: 487 YPVEDIL-RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIII 545
              + +     +   +  +  + M  YL EI + +         +    +     +  + 
Sbjct: 497 IGPDFLRSGLGWLQLVAPSMKAEMTTYLAEIQAGEHDFDKAYAII-RPGDGAERWVAGLG 555

Query: 546 KKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLT 601
           K              T+ DI+  ++ +  L    +  E+ ++    F    SH++R PL 
Sbjct: 556 KIERDGEGRPIRMVGTIKDITNQRRAEQALRDKAEELERSNTELEQFAYVASHDLREPLR 615

Query: 602 AIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEP 661
            +  + + +  +R+G   +    E+  +       +  ++ +LL+ S+I  G++     P
Sbjct: 616 MVSSYVD-LLARRYGDKLDDDAREFIAFAKDGATRMDRLILELLEYSRI--GRITRPMLP 672

Query: 662 VSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPS 721
           V+L   V  A+  +     E    I T   + +P +L D   + ++  N++ NAI +   
Sbjct: 673 VALGPVVERALRALAPKIEESGAEIAT-PPSVLPTVLGDAEELMRLFQNLIGNAIKYRDP 731

Query: 722 GGQIIISTTHTSNE-EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPL 780
             + +I+    +   E +L V D G+G+     E+    F ++   ++   EGTG+GL +
Sbjct: 732 ERKPVITLEAENTGKEWVLTVVDNGIGIDPKYYERVFLIFQRLH--RRGEFEGTGIGLAV 789

Query: 781 AKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
            K +V+ + G+ ++ S P +G+   +  P
Sbjct: 790 CKKIVEHHGGRIWVESVPGQGSRFSVTLP 818


>gi|89067357|ref|ZP_01154870.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal [Oceanicola
           granulosus HTCC2516]
 gi|89046926|gb|EAR52980.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal [Oceanicola
           granulosus HTCC2516]
          Length = 691

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 112/659 (16%), Positives = 216/659 (32%), Gaps = 63/659 (9%)

Query: 185 HVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLT 244
              +      A+ + ++   + +       ++  +E  D+   +      R++     + 
Sbjct: 53  QRLQTTQAMHAVREDIETDVNRMVRTLAEMTAALRESPDMTQAEFTAHATRLRQGDPRIV 112

Query: 245 EYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLS 304
            + A  D  +              L  +E    +     T       +          ++
Sbjct: 113 NFAAAPDLKVSMIHPIEGNEAVLGLDYREKPSQLPGVLETIALNDINILGPIDLVQGNVA 172

Query: 305 HRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAG 364
                 +  Y  +G                +     + +    +  L     V  I  A 
Sbjct: 173 SILRQPVMLYGPDGSGELWGI-------VSLVLDHTIAFQLADYGELLAEYDVAVIGAAS 225

Query: 365 GLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQF 424
                                    D   +       T           T       +  
Sbjct: 226 -------QEGERRLLFGNAAPEELRDPVLLTFDFPNGTWDLLATPHGGWTPNAVFTPDNM 278

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKL 484
                  GI           R+ ++   ++ S +EA   G A+ + +  +++ N     +
Sbjct: 279 LIIAISAGILGALWYILYLDRQRQVAQRRMVSAIEALDGGFAMYDADDRLIACNSGFLDM 338

Query: 485 F---------GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKE 535
           +         G   EDI+R   +     +       +L E +   L +T           
Sbjct: 339 YDRCRDIIRPGVRFEDIVRYGISRQQYPDAIGREQAFLRERME--LHRTGNCDLEQKLSN 396

Query: 536 EKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHE 595
            +   +    ++            DI+E K        A++ AE     K++F+  +SHE
Sbjct: 397 GRCYHVS---ERSSDDGLLVGLRVDITELK-------AAQEAAEAADQAKTNFMNVLSHE 446

Query: 596 IRTPLTAIIGFS----------------EVIKNQRFGPLGNP------RYIEYANYIDRS 633
           +RTPLT I+G S                  I+      L            E    ID+S
Sbjct: 447 LRTPLTVILGHSRLGASFSKMPKAQKVLAAIQRTEVDGLAEEVASLYDDLGERMRKIDQS 506

Query: 634 GNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANN 693
           G  +L ++ND+LD SK+ SG +++  +       V    + +   A +K + +  S    
Sbjct: 507 GTYLLSLINDMLDFSKLSSGSLSIDPDEFDAANLVELVTAQLAPMAEQKGLALTASTEPA 566

Query: 694 IPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVI-LRVRDTGVGMTNYE 752
             R+LAD R  +QI +N++ NA+ F+  G    +S T      ++ + V D G G+ + E
Sbjct: 567 --RVLADSRRCQQILINLIGNALKFSTCG---TVSVTAEMRGRMLDIAVSDEGPGIPDDE 621

Query: 753 LEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
           L +  +PF Q+ ++   R  GTGLGL +A+ + +   G     S   +G+   +  PL 
Sbjct: 622 LSRIFEPFHQVDSTATRRAGGTGLGLAIARQLAEMQGGALSATSVYGQGSRFVLSLPLA 680


>gi|222152736|ref|YP_002561913.1| alkaline phosphatase synthesis sensor protein [Streptococcus uberis
           0140J]
 gi|222113549|emb|CAR41350.1| putative alkaline phosphatase synthesis sensor protein
           [Streptococcus uberis 0140J]
          Length = 441

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 87/405 (21%), Positives = 175/405 (43%), Gaps = 37/405 (9%)

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGI 473
           TFIP  + +          ++ E    +   +K+      L ++    + G+ +++    
Sbjct: 70  TFIPDSQKDLRQIFSKHGALKKELAKRKEESQKLSSN---LEALTSHLTMGMFLVSETKD 126

Query: 474 ILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGST 533
           I   ++++   F  P  D   +        +  +V+            ++T++K   G  
Sbjct: 127 IQLYSKSLPHYF--PDADKPFQKIEDIGRTDVKAVVAQAFI------TKKTIKKELKGYH 178

Query: 534 KEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
            +  L+ L +    +           + ++D++  +  +                  DF+
Sbjct: 179 -DGDLI-LEVTAVPIFNQYGTVFQVLVLLYDLTTIRDYE--------------KLNMDFI 222

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
           +  SHE+RTP+T+I GF+E IKN            E+ + I      +  IV  +L +SK
Sbjct: 223 SNASHELRTPVTSIKGFAETIKNMPEEEQTLKD--EFLDIIYNESLRLEHIVEHMLTLSK 280

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709
           +   K  L    ++L++ +    + ++   +EK + +    A ++  I +D   + QI L
Sbjct: 281 V--NKTQLQKTEIALNDFLYYIGNSMKHQLHEKHLQLSFDLAEDV-TIKSDKYLLSQILL 337

Query: 710 NILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
           N++SNAI +T  GG+I IST      ++ + V DTG+G++  E ++  + F ++   +  
Sbjct: 338 NLMSNAIRYTDEGGKITISTAFKE-GKIQITVSDTGIGISKLEQDRIFERFYRVNKGRSR 396

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           +  GTGLGL + K +     G+ ++ S   KG+   + FP   TS
Sbjct: 397 QSGGTGLGLSIVKELSQVLGGQVFVKSQIGKGSHFTLEFPKSITS 441


>gi|144898721|emb|CAM75585.1| Signal transduction histidine kinase [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 752

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 75/275 (27%), Positives = 122/275 (44%), Gaps = 21/275 (7%)

Query: 560 DISEWKQEKNKLSHAKKIAEKESS-------------HKSDFLARVSHEIRTPLTAIIGF 606
           D++  +QE+       ++A                   KS+FLA +SHEIRTP+  I+G 
Sbjct: 210 DLARRRQEEQLAERNVELAHLLDENAQAREAAEQATKAKSEFLATMSHEIRTPMNGIVGM 269

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
           +E++ +    P      +++A  I  S   +L I+ND+LD SK+E+G ++       L  
Sbjct: 270 TELLIDTGLTP----ERLKFAQTIRTSAESLLTILNDILDFSKLEAGHLHFESVEFDLSL 325

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQI 725
            V +AI +V      + + +      ++  R L D   ++Q+ LN+L NA  FT  G  +
Sbjct: 326 QVEDAIDIVAPRLRGRNVDLVYWIEPSLRGRYLGDPVRLRQVILNLLGNAAKFTEFG-VV 384

Query: 726 IISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
            I         +   V DTG+G+           F Q  +S   R  GTGLGL + + +V
Sbjct: 385 SIHVASGQGGRLRFAVTDTGIGIPQAAQASLFGMFAQADSSTARRFGGTGLGLAICRRIV 444

Query: 786 DANMGKFYIFSTPAKGTLIE--IIFPLYDTSHPHD 818
           +   G    FS   KG+     ++ PL       D
Sbjct: 445 EGMGGDIGFFSEEGKGSTFWFEVMLPLIQPVPAQD 479


>gi|88859263|ref|ZP_01133903.1| sensory box sensor histidine kinase/response regulator
           [Pseudoalteromonas tunicata D2]
 gi|88818280|gb|EAR28095.1| sensory box sensor histidine kinase/response regulator
           [Pseudoalteromonas tunicata D2]
          Length = 884

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 80/249 (32%), Positives = 126/249 (50%), Gaps = 10/249 (4%)

Query: 566 QEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE 625
           Q    L  A + AE+ +  KS FLA +SHEIRTP+  I G    + +         R  +
Sbjct: 362 QLNQDLLKATEKAEQATEFKSIFLANMSHEIRTPINGISG----LIDLCLATELTHRQRD 417

Query: 626 YANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRIL 685
           + +    S NL++ +VND+LD SKIE+GK+++ +   SL+  +   I+ +   + EK + 
Sbjct: 418 FLDKAAYSTNLLMSLVNDILDFSKIEAGKLSIEYIQFSLEAIIDNLIANIAPRSYEKNLH 477

Query: 686 IRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGG-QIIISTTHTSNEE----VIL 739
           +    A N+PR+ + D   V QI  N+ +NA+ FT  G   I +      N +    +IL
Sbjct: 478 LNCEIAPNLPRLFMGDPLRVNQILFNLCTNAVKFTSIGSITITVLFEAIPNNDKQIKLIL 537

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V DTGVG+T  +++     F Q   S   +  GTGLGL + K +V    G+  + STP 
Sbjct: 538 SVSDTGVGLTEQQIDNIFNAFIQADGSISRKYGGTGLGLSIVKQLVKLMGGEISVNSTPD 597

Query: 800 KGTLIEIIF 808
            G+   +  
Sbjct: 598 VGSSFCVEL 606


>gi|310639570|ref|YP_003944328.1| sensor protein [Paenibacillus polymyxa SC2]
 gi|309244520|gb|ADO54087.1| Sensor protein [Paenibacillus polymyxa SC2]
          Length = 717

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 79/412 (19%), Positives = 162/412 (39%), Gaps = 31/412 (7%)

Query: 406 NRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIE--VMQLCSILEATSD 463
           +      +      +  +  E +            R+ +   E       L S++  T+D
Sbjct: 328 DGHFDTRLEIKGGHELARLGERINAMAYNLGMYTRRLEQMYEENRSVKEHLESVINQTAD 387

Query: 464 GIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQ 523
            I + ++E  ++  N A   L+G+  ++++ +                +  E L      
Sbjct: 388 AIHVTDQEDRVIRVNHAFEALYGWTKKELVGRKLE--FVPPQQQEEYEFQKESLLQG-ES 444

Query: 524 TLEKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAE 579
            +   TL   K+   + + +    +         +     DI+   + +  L  ++K+  
Sbjct: 445 IVSSETLRMRKDGSTVEISMSTSPILDEQGEILGFICVSRDITGRNRMEELLRRSEKLTT 504

Query: 580 KESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLD 639
                     A V+HEIR PLT + GF       +         +++ + +    + +  
Sbjct: 505 V-----GQLAAGVAHEIRNPLTTLRGF------LQLQQQNQVLNMKHNDIMMSELDRINL 553

Query: 640 IVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILA 699
           IV++ L ++K ++    +HF+   +   VS+ ISL+   A+   I+      +    + A
Sbjct: 554 IVSEFLILAKPQA----VHFQKKDVRYIVSDVISLLDSQAHLLGIVFNLQVTDEPALVYA 609

Query: 700 DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKP 759
           +   +KQ+ +N+L N++     GG I I       E V + +RD G G+    L K  +P
Sbjct: 610 EENQLKQVFINLLKNSMEAMSKGGIITIHLFLE-GESVKIFIRDQGTGIPAEMLSKLGEP 668

Query: 760 FGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLY 811
           F         +  GTGLGL +++ ++ ++ G   I ST  +GT   +  P+ 
Sbjct: 669 FVT------NKETGTGLGLMVSQRIIQSHKGTLDIESTEGEGTTALVQLPIA 714



 Score = 76.2 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/115 (17%), Positives = 39/115 (33%), Gaps = 4/115 (3%)

Query: 89  IDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTT 148
            D    +  ++       G    +++G +L  V      +       LL+ ++    +T 
Sbjct: 392 TDQEDRVIRVNHAFEALYGWTKKELVGRKLEFVPPQQQEEYEFQKESLLQGESIVSSETL 451

Query: 149 LWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKK 203
               +G+   V I ++  PI     E  GF    +       N    L +R +K 
Sbjct: 452 RMRKDGST--VEISMSTSPILDEQGEILGF--ICVSRDITGRNRMEELLRRSEKL 502


>gi|225388288|ref|ZP_03758012.1| hypothetical protein CLOSTASPAR_02023 [Clostridium asparagiforme
           DSM 15981]
 gi|225045635|gb|EEG55881.1| hypothetical protein CLOSTASPAR_02023 [Clostridium asparagiforme
           DSM 15981]
          Length = 1111

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 110/530 (20%), Positives = 194/530 (36%), Gaps = 37/530 (6%)

Query: 310 SLSAYFDEGENLTPETVDKCPIPFF---VYSHGNLFYANPSFLLLTKYKSVDDIEIAGGL 366
             +       +      +  P       V     L   N     L    +      +   
Sbjct: 308 RAAGKLRRQADYIGHLYNAVPEGIALLTVERPYRLLELNREGSRLLNAPANGPGGGSQVR 367

Query: 367 STLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLA--MTFIPFEKANQF 424
           S                     S    I   +R+  ++ +     A  +     ++  + 
Sbjct: 368 SLEEILYLEDYKRTADLFREAISSGRKIPFESRM--VRADGSLFWASGIAERVLDQDGKE 425

Query: 425 PENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE---GIILSTNRAV 481
                 + I  E +     +R+   E   L   +      I  +N        +   R +
Sbjct: 426 ILIATFHDITAEKLAEEEAEREKLQERRMLVGAISNVFPVIISLNLSRDTLKFIYLQRGL 485

Query: 482 SKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKIT-------LGSTK 534
             +     +    + +  F+    P  +  +       +LR+TL K              
Sbjct: 486 --MVNIRKDGAYSQLYESFIPTVHPDSLEEFKRRFSLENLRRTLGKERPEVFMDTRQMLT 543

Query: 535 EEKLLSLRIIIK----KLPFSSCYSLTMHDISEWKQEKNK----LSHAKKIAEKESSHKS 586
           + +     I I              L    I E + E+ +    L  A + A   S  KS
Sbjct: 544 DGQYHWTSIQIIYVDNPYSEDDLAILLSRRIDEQRYEEEQKRQALQSALEGARAASMAKS 603

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
            FL+ +SH+IRTP+ AI+G + +   +    +   R  E    I  S   +L ++ND+LD
Sbjct: 604 QFLSNMSHDIRTPMNAIMGMAAIASTRLDDRV---RVAECLKKISLSSQHLLSLINDILD 660

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN-NIPRILADLRSVK 705
           +SKIESGK++L  EP +  E V+    L+   A   ++ +  S    +   ++ D   V+
Sbjct: 661 MSKIESGKLSLREEPFNFAELVANVTELMVPQAIAAQLEMNVSLPVLSQEEVVGDALRVR 720

Query: 706 QIALNILSNAIHFTPSGGQIIISTTHTSNEE-----VILRVRDTGVGMTNYELEKAMKPF 760
           Q+ LNILSNA+ +T +GG++ I                 R  DTG+GM+   LE   +PF
Sbjct: 721 QVYLNILSNAVKYTEAGGRVQIEVWEEPGSRGGRRNFFFRCTDTGIGMSGDFLEHLFQPF 780

Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            +  +S   +  GTGLG+ + + +VD   G   + S P +G+   ++ PL
Sbjct: 781 ERAADSAD-KASGTGLGMAITRNIVDLMSGDIQVESRPGEGSRFTVMLPL 829


>gi|88797952|ref|ZP_01113539.1| sensor/response regulator hybrid [Reinekea sp. MED297]
 gi|88779149|gb|EAR10337.1| sensor/response regulator hybrid [Reinekea sp. MED297]
          Length = 951

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 77/306 (25%), Positives = 146/306 (47%), Gaps = 12/306 (3%)

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568
           +       L   + +T +       +    +++ I        +       D+ E  +  
Sbjct: 203 VVDIREGNLESRVPETSKGELRELEEGINAMAMTIKDAYNDMQNSVEQATLDLRETLETI 262

Query: 569 N----KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
                +L  A++ A++ +  K++FLA +SHEIRTPL  IIGF+ ++           +  
Sbjct: 263 EIQNIELDMARREAQQANQVKTEFLANMSHEIRTPLNGIIGFARLLARSNLTK----KQE 318

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           +Y + I  S  ++L I+ND+LD  KIE+GK+ L     +L E++ E ++++   ++ K +
Sbjct: 319 DYISTIMSSSQVLLTIINDVLDFCKIEAGKLMLDNRSTNLRESIEEVLTMLDPASSAKNL 378

Query: 685 LIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE---VILR 740
            + + F  ++P  ++ D   +KQ+  N++SNAI FT  G  +I +           V + 
Sbjct: 379 EVVSLFFADVPEQLVFDPLRLKQVLTNLISNAIKFTNEGSVVIRTMIEQQQGNKVTVRVS 438

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V DTG+G++  + +   + F Q  +S      GTGLGL ++K +V+   G   + S   +
Sbjct: 439 VTDTGIGLSKTQQKALFQAFAQADSSTAREFGGTGLGLVISKRLVEQMGGDIGLESKKDE 498

Query: 801 GTLIEI 806
           G+    
Sbjct: 499 GSTFWF 504


>gi|23016363|ref|ZP_00056120.1| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 794

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 91/739 (12%), Positives = 206/739 (27%), Gaps = 38/739 (5%)

Query: 77  DPIPRTVRFTWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGD- 135
                 VR  +   A G +      L   IG     +      + +          I   
Sbjct: 77  SAGLPEVRNVFVAGADGRVVA--STLASMIG---QDLSRRVYFEAAAKAPFHSGLIIAAP 131

Query: 136 LLKRQNTWYGKTTLWPIEG--TNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDP 193
            +       G+  + PI G        +  A  P +     FS   G  +          
Sbjct: 132 AVSPFTGKMGQVVVRPIIGPLGTFGGIVAAALNPEF-----FSEALGGVVSGDVDRAVIA 186

Query: 194 RALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV 253
              G  L +       +  G         +   +      +                 D 
Sbjct: 187 NLDGDVLARLPDPGRHM-GGSIKSGPMFTEQLPKSRAGTFIAPSAFDGQERLASFQVLDR 245

Query: 254 LKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSA 313
                   +T++ +      +   +                  +        RN     A
Sbjct: 246 HPIVVSVGITTQAALRRWAVNTMIMGGTGLVFTALLLAAFIQLQR-----HERNRREAEA 300

Query: 314 YFDEGENLTPETVDKCPIPFFVYSHGN-LFYANPSFLLLTKYKSVDDIEIAGGLSTLLDA 372
                E      VD        Y+    L   N ++       +   I            
Sbjct: 301 ALKASEESYRILVDDQDDLIHRYAPDTTLLAVNRAYARFYGQPADQLIGRRWI------- 353

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
             + +      +    +             +         + +                 
Sbjct: 354 EFMPEEERPFVLSCLHALNQLQPYREDRRRVFLADGQERWIEWRTTALYGALDNLTGYQT 413

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINRE-GIILSTNRAVSKLFGYPVED 491
           +  +  D+   +  +                   +++   G I   N + +  +GYPVE 
Sbjct: 414 VGRDVTDSHRAQIAIAEREELYSQSFHRNPAIKLLVDPRTGAITDANDSAALFYGYPVEV 473

Query: 492 ILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFS 551
           + R         +   +        +  D R+ L      S+ E + + +      +   
Sbjct: 474 LKRMHIHDINVASDEDIAREM--AAVENDGRKFLRFRHRLSSGEIRDVEVYSSPLHVGGR 531

Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
           +  S  + D+S+  + + +L        + ++    F    SH++R PL  +  +   + 
Sbjct: 532 AYLSSFVVDVSDRNRFEAELQAKTAELARSNAELEQFAYVASHDLRQPLRMVTSYV-TLL 590

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
            +R G   +    E+  +       +  ++  LLD S++  G     F  + L   +++A
Sbjct: 591 ERRLGDALDESSREFIGFAVSGVRRMDALIKGLLDYSRVGRGGE--DFTQLDLGSVLADA 648

Query: 672 ISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH 731
            + +     E            +P +      + ++  N++ NA+ +     +  I  + 
Sbjct: 649 CANLG--LGETGDEASVVVEPPMPVLPGVPSELIRLFQNLIGNAVKYRHPERKPEIRISA 706

Query: 732 TSNE-EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
                E I+ + D G+G+     ++    F ++        EGTG+GL + + +V  + G
Sbjct: 707 RPEGTEWIITIADNGMGIGANYFDRIFGMFQRLHAEN--EFEGTGIGLAICRKIVATHGG 764

Query: 791 KFYIFSTPAKGTLIEIIFP 809
           + ++ S   +G+   +  P
Sbjct: 765 RIWVESEEGQGSRFMVALP 783


>gi|94263955|ref|ZP_01287757.1| PAS:Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93455627|gb|EAT05809.1| PAS:Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 779

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 84/622 (13%), Positives = 175/622 (28%), Gaps = 65/622 (10%)

Query: 238 NKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSK 297
           ++   +    A + D               S      +   +                 K
Sbjct: 35  DRFGGVIFSLAQQQDTGDLADIRGRIVATPSRSSLGGYLAQSWTLQKHGIDLHRDAGEVK 94

Query: 298 ESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHGNLFYANPSFLLLTKYKSV 357
            +           L+   + G   T    D             L   N     L   K  
Sbjct: 95  FTGFPQEQVVDAVLAGEAEIGFVRTGVLEDLAAAGRL--DPDRLRIFNRQPAWLFPKKLS 152

Query: 358 DDIEIAGGLSTLLDAPKLSDNNAIKPVML------YRSDRTCI---------AASARLHT 402
            D+      S     P        + +           D                A +  
Sbjct: 153 TDLYPEWLFSATAAVPPELATAVAQALFRIEPDSPAALDGQYYGFAPPTDYTPVEAVMLR 212

Query: 403 IQWNRENSLAMTFIPFEKA------NQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCS 456
           +  + E                                   +     + +      +L  
Sbjct: 213 LGVHPERFEQFDIHDITAKYFAEIVGILLLLCLLGLAMTMILARAHRRARAAGAEREL-- 270

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTP-----SVMNH 511
           +L    +G+  +++ G     N+A  ++ G+   ++L          + P          
Sbjct: 271 LLACIGEGVYGVDQHGNCTFFNQAAQEMLGFSAREMLGHDQHRLFHHHRPDGSPYPHAEC 330

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS---CYSLTMHDISEWKQEK 568
            +   L    ++  E        +       +++  L          +T  D+SE K+ +
Sbjct: 331 PIWLTLQDGHQRREEDEWFWRE-DGSGFPTSLLVSPLTQGDKQVGAVVTFRDLSERKELE 389

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
           N+L  A+K+              ++H+    LT II  S +          +        
Sbjct: 390 NQLFQARKL-----ESIGVLAGGIAHDFNNILTPIIMRSGMALTM---APADSPLRRNLE 441

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK-RILIR 687
            I  +      +V  +L+ S+    + +     ++L+  V E +  ++        + + 
Sbjct: 442 QIRLAAERAKTLVGQILEFSR----QSDHKPRKLALEPVVKETLKFMRSTLPANIALELT 497

Query: 688 TSFANNIPRILADLRSVKQIALNILSNAIHFTP-SGGQIIISTTH-------------TS 733
                    + AD   + Q+ +N+++NA H     GG++ +S                  
Sbjct: 498 GHSGGGQDMVNADPTRITQVVMNLVTNAAHAMRRQGGRVTVSLERWADGGKAPAPGLPAD 557

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
            + + L V D G G+    + +  +P+         RGEG+G+GL +   +V A  G   
Sbjct: 558 QDYLQLTVSDDGEGIPPEIIPRIFEPYFTTK----RRGEGSGMGLAMVHGIVKALGGAIT 613

Query: 794 IFSTPAKGTLIEIIFPLYDTSH 815
           + ST  +GT   +  P   T+ 
Sbjct: 614 VHSTEGEGTTFNVFLPAVQTAA 635



 Score = 44.6 bits (104), Expect = 0.061,   Method: Composition-based stats.
 Identities = 25/208 (12%), Positives = 55/208 (26%), Gaps = 14/208 (6%)

Query: 86  TWNIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNN------HIGDLLKR 139
            + +D HG     ++   + +G  A +M+G     +      D +        I   L+ 
Sbjct: 279 VYGVDQHGNCTFFNQAAQEMLGFSAREMLGHDQHRLFHHHRPDGSPYPHAECPIWLTLQD 338

Query: 140 QNTWYGK-TTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
            +    +    W  +G+     + ++ L    +     G     +V    +        +
Sbjct: 339 GHQRREEDEWFWREDGSGFPTSLLVSPLTQGDKQ---VGA----VVTFRDLSERKELENQ 391

Query: 199 RLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEK 258
               +      +  G  + +               L M    S L           +  K
Sbjct: 392 LFQARKLESIGVLAGGIAHDFNNILTPIIMRSGMALTMAPADSPLRRNLEQIRLAAERAK 451

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKK 286
             +    E S         + L    K+
Sbjct: 452 TLVGQILEFSRQSDHKPRKLALEPVVKE 479


>gi|327479089|gb|AEA82399.1| two-component sensor PhoR [Pseudomonas stutzeri DSM 4166]
          Length = 433

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 78/403 (19%), Positives = 163/403 (40%), Gaps = 38/403 (9%)

Query: 414 TFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILE-------ATSDGIA 466
                +     P++    G   +++   + +R + +    L  I++       A  D + 
Sbjct: 55  WLHRSDPDEPPPDSAGIWGDVFDNLYQ-LQRRDLRLRGE-LQGIIDRAQGSTAALKDAVI 112

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
           +++ +G +   N A ++L G         P    +                        +
Sbjct: 113 MLDSDGNLEWWNPAANRLLGLKKPQDAGHPIGNLVRHPAFKEYFD----------SGNYD 162

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKS 586
           +    ++  +  + L+  I +        L   D++   Q +                + 
Sbjct: 163 QPLELASPVDDRIRLQFNITRYGNREHLLLV-RDVTRLHQLE--------------QMRK 207

Query: 587 DFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLD 646
           DF+A VSHE+RTPLT I G+ E +     G   NPR++     +++    +  ++NDLL 
Sbjct: 208 DFVANVSHELRTPLTVIAGYLETLLEHAEGV--NPRWLRALQQMNQQAGRMQHLLNDLLL 265

Query: 647 ISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQ 706
           ++++E+       +PV++   +   +S  +  +  +  LI    A  + ++      ++ 
Sbjct: 266 LARLETSSRPTDNQPVAVGLLLQSIVSDARALSGARGHLISLDAAPEL-QLKGSETELRS 324

Query: 707 IALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNS 766
              N++ NA+ +TP GG I +    +      L V D+G+G+    L +  + F ++ +S
Sbjct: 325 AFSNLVFNAVKYTPDGGTIHVRW-WSDEAGAHLSVEDSGIGIEQKHLPRLTERFYRVDSS 383

Query: 767 QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
           +     GTGLGL + K ++  + G+  I S P +G+     FP
Sbjct: 384 RASSTGGTGLGLAIVKHVLLRHQGRLDITSIPGRGSCFSCHFP 426


>gi|288940175|ref|YP_003442415.1| integral membrane sensor hybrid histidine kinase [Allochromatium
           vinosum DSM 180]
 gi|288895547|gb|ADC61383.1| integral membrane sensor hybrid histidine kinase [Allochromatium
           vinosum DSM 180]
          Length = 778

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 75/258 (29%), Positives = 130/258 (50%), Gaps = 8/258 (3%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
             +Q   +L  A+  AE+ +  KS FLA +SHEIRTP+  IIG +E+++        N  
Sbjct: 248 RIEQRDAELREARDAAERANRAKSHFLANMSHEIRTPMNGIIGMTELLQETDL----NAA 303

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             +    I  S   ++ I+ND+LD+S+IE+G++ L        E++   +  ++  A  K
Sbjct: 304 QRDCTRVIQDSAAALMRIINDILDMSRIEAGRLELERLDFDPRESIERTLEPLREIAQRK 363

Query: 683 RILIRTSFANNIP-RILADLRSVKQIALNILSNAIHFTPSGGQ-IIISTTHTSNEEVI-- 738
            +         +P R+  D   ++QI  N++SNAI FT  G   + +     +++ V   
Sbjct: 364 GLEFAIELDPELPARLRGDPGRLRQILTNLVSNAIKFTEQGRVSVTLDCLERTDDWVRFV 423

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTP 798
           + VRDTG+G++  E  +  + F Q   S + R  GTGLGL +++ +V+   G   + S P
Sbjct: 424 IAVRDTGIGLSTEECSRLFERFSQADVSTRRRYGGTGLGLAISRQLVELMGGGIDVESKP 483

Query: 799 AKGTLIEIIFPLYDTSHP 816
             G++  +   L  +  P
Sbjct: 484 GLGSVFRVELVLESSESP 501


>gi|153955165|ref|YP_001395930.1| two component sensor kinase [Clostridium kluyveri DSM 555]
 gi|219855600|ref|YP_002472722.1| hypothetical protein CKR_2257 [Clostridium kluyveri NBRC 12016]
 gi|146348023|gb|EDK34559.1| Two component sensor kinase [Clostridium kluyveri DSM 555]
 gi|219569324|dbj|BAH07308.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 351

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 66/241 (27%), Positives = 119/241 (49%), Gaps = 6/241 (2%)

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
           ++++   K        +  F++ VSHEI++PLT+I GF+ +++    G L   +   YAN
Sbjct: 116 DEVNRMAKELGSLEKMRQGFISDVSHEIQSPLTSISGFAALLRK---GNLSESQISRYAN 172

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I+     +  +  +LL +S +ES   NL+ +   +D+ +   + +++   + K I +  
Sbjct: 173 IIEAESKRLSKLSENLLRLSNLESENHNLNLKNYQIDKQIESILLMLEPQWSAKSITLDV 232

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGM 748
           S    I  +  D   + Q+ +N+L NAI FT   G I +  +   N E+  ++ DTG G+
Sbjct: 233 SLDKTI--VCGDEDLLSQVFINLLHNAIKFTSENGNIGVKLSSNEN-EIECKISDTGRGI 289

Query: 749 TNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
           +  +  +  + F +   S+     G GLGL + K +VD + GK  + S   KGT   I  
Sbjct: 290 SPQDQPRIFERFYKADKSRDRSLGGNGLGLSIVKKIVDLHGGKISLTSEIGKGTEFTIFL 349

Query: 809 P 809
           P
Sbjct: 350 P 350


>gi|332829445|gb|EGK02094.1| hypothetical protein HMPREF9455_01728 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 576

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 81/370 (21%), Positives = 159/370 (42%), Gaps = 24/370 (6%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
            K+  E  ++ +++    D +  ++    I+  N    K+ G    +IL KP       N
Sbjct: 222 EKILREKKRVETLINNMHDPVIGLDESKFIIFINDEALKITGLSRNEILNKPVQDIAVTN 281

Query: 505 TP-----SVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMH 559
                    +   L +     L+   +       KE   + +    + +     Y + + 
Sbjct: 282 DLIRTLIVELIDPLAKRDEGPLKIFSDDKQSYFEKEIIHIEINKTGENITELIGYVILLK 341

Query: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLG 619
           +I+ +K              +  S K++F+A +SHE++TP+++I   ++ +       + 
Sbjct: 342 NITIFK--------------ELDSAKTNFIATISHELKTPISSIKMSTQ-LLEHNETGIL 386

Query: 620 NPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYA 679
           N    +  + I      +L I  +LL++S++E+G + L+ +       V  AI  V+L A
Sbjct: 387 NDEQKQLVDGIKEDSTRLLQITGELLNMSQVETGNIQLNIQSTDPGLIVRYAIDTVKLQA 446

Query: 680 NEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVIL 739
             KRI ++     +IP I+AD      + +N L+NAI ++     I +S    +    + 
Sbjct: 447 EHKRIKLQVDMEPDIPLIVADAEKTAWVLINFLTNAIRYSMEDSDIEVSLRRENKG-ALF 505

Query: 740 RVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPA 799
            V+D G G+ +   +K  + + QIP S +    G+GLGL ++K  ++   G   + S P 
Sbjct: 506 SVKDFGKGIDSRYKKKIFERYFQIPGSLKS---GSGLGLAISKEFIETQGGTIGVNSNPG 562

Query: 800 KGTLIEIIFP 809
            G+    I P
Sbjct: 563 MGSTFFFIIP 572


>gi|330836603|ref|YP_004411244.1| histidine kinase [Spirochaeta coccoides DSM 17374]
 gi|329748506|gb|AEC01862.1| histidine kinase [Spirochaeta coccoides DSM 17374]
          Length = 418

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 84/380 (22%), Positives = 160/380 (42%), Gaps = 28/380 (7%)

Query: 445 RKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           + +  E   L S+L++ SDGI + +    I+  NR V+ L   P++           +  
Sbjct: 25  KHLVAETELLESVLDSLSDGIILYDSSHKIVYLNRVVTTL--IPLKRFSSYHGIRLDDAL 82

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEE-KLLSLRIIIKKLPFSS------CYSLT 557
               +  +L E  +  +             +  K + + +   +              L 
Sbjct: 83  ADKDILGFLKEYWAGKIHADQNNEFNYQKGDTVKTILMTLSTFRGQDDELTGTEVYEMLV 142

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKN--QRF 615
             DI+E K+     +  +    +  +  +   A V+HEI+ PL ++    +++    +R 
Sbjct: 143 ATDITERKR-----NDTRLRRSESLAQMTTMAASVAHEIKNPLASMGIHLQLLSKAFERK 197

Query: 616 GPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLV 675
           G L       Y + ++   + +  IV D L   +     M++H     L+  +S+  S V
Sbjct: 198 GELTEDEAERYIHVLEEEIDRLNRIVVDFLFAVRP----MDVHLRIQDLNRLISDLTSFV 253

Query: 676 QLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFT-PSGGQIIISTTHTSN 734
               +E+ + +R    + +PR+  D   +KQ+ LN++ NA++   P GG + +ST     
Sbjct: 254 MPELDEQHVALRLELQDYLPRLSLDENLMKQVLLNLIKNAMNAMEPQGGILTVSTKLV-G 312

Query: 735 EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
             V L+V DTG G+    L K  +P+    +S      GTGLGL +   ++  + G   +
Sbjct: 313 NVVHLKVSDTGTGIKPEHLSKIFEPYFTTKSS------GTGLGLTVVFKIIKEHGGDISV 366

Query: 795 FSTPAKGTLIEIIFPLYDTS 814
            S P +GT   +IFP+  + 
Sbjct: 367 SSEPGRGTTFTMIFPVPRSE 386


>gi|257090018|ref|ZP_05584379.1| two component system sensor histidine kinase [Enterococcus faecalis
           CH188]
 gi|256998830|gb|EEU85350.1| two component system sensor histidine kinase [Enterococcus faecalis
           CH188]
          Length = 576

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 73/364 (20%), Positives = 160/364 (43%), Gaps = 32/364 (8%)

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
            Q   +L+    G+ II+ +G +   N  + ++ G        K       +        
Sbjct: 235 EQFHELLDELMIGVFIIDTQGRLRLLNPKMQEMLGLSA-----KNMQSNYLEVIQDADLI 289

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY--SLTMHDISEWKQEKN 569
           +L   +  +     ++IT+        L L +       ++ Y      +D++  +Q + 
Sbjct: 290 HLIHQVVAEKNSLHQEITVTQGPTPLRLDLSLRYLDDQSANDYQVLGIAYDLTRVRQLE- 348

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE-YAN 628
                          + DF++ VSHE++TP+T+++GF+E + +   G   +P+ ++ + +
Sbjct: 349 -------------KMQKDFVSNVSHELKTPVTSLLGFTETLID---GAKEDPKVLDQFLH 392

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            + +    +  ++ ++L++S+  S  +    + ++L++ ++E +   Q     K++    
Sbjct: 393 IMQKDAQRLQQLIQEILELSR-GSATIPYAEQEITLEKFITEILGSYQQQLVAKQLK--- 448

Query: 689 SFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
           +  + +P             I  N++ NAI ++   GQI IS     N+++ L V+DTG+
Sbjct: 449 TVVHGLPESQFFTKYELFYPIVKNLIENAIQYSQENGQITISYAIE-NQQLRLSVQDTGI 507

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G++  + E+  + F ++  ++     GTGLGL + +   +   GK  I S    GT   I
Sbjct: 508 GISQKDQERIFERFYRVDKARSRHSGGTGLGLAIVQNYTELLGGKIAIDSHLGLGTTFTI 567

Query: 807 IFPL 810
             PL
Sbjct: 568 TLPL 571


>gi|256838767|ref|ZP_05544277.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
 gi|256739686|gb|EEU53010.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
          Length = 657

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 93/444 (20%), Positives = 178/444 (40%), Gaps = 21/444 (4%)

Query: 375 LSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFE-KANQFPENMPQNGI 433
             D +     M        +  +          E      F+      ++  + +   G 
Sbjct: 225 PEDRSVFYDAMQSLIAGKNVTINFTCRIQTKYDETWQYCDFMGVPFDQDENGDIIRYTGF 284

Query: 434 EPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDI 492
                  +   R+++    ++    +         + +     + N  ++    Y  + I
Sbjct: 285 RQNIPKIQQLNRELKERNYKIELSFKTVGMSYWGFDVKSLKFSAFNDPINDF--YSEKTI 342

Query: 493 LRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK-EEKLLSLRIIIKKLPFS 551
             + +      +    +  Y+  +    + +         TK +++  +L +   ++   
Sbjct: 343 TPEDYLNATHPDDVVFVRKYMEHMFR-GIDKDFNVKYRSKTKWDDEWQTLLVTGIQVERD 401

Query: 552 S-----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGF 606
                  Y+    + ++W++   +L   K+ AE     KS FLA +SHEIRTPL AI+GF
Sbjct: 402 KEGHVTRYTGITINNTKWEKMIQQLKELKEKAELSDRLKSAFLANMSHEIRTPLNAIVGF 461

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
           SE++              EY N I  +  L+L ++ND+LD+SKIESG +    E  +L +
Sbjct: 462 SELM----VTCDDPEEKKEYINIIQSNNELLLRLINDILDLSKIESGIIERRKENFNLAK 517

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726
             +E    +Q       + +R    N+   +L D   +KQ+ +N L+NA+  T SG  I 
Sbjct: 518 VCNELFVTIQAKMTNPNVELRLDGPNSECWVLLDRNRLKQVWMNFLTNAVKCTKSG-YIK 576

Query: 727 ISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
           +         + + V DTG+G+ +   +K    F ++        +GTGLGL +++A+V+
Sbjct: 577 MGYGIEREG-LRIYVEDTGIGIPDDLHDKVFTRFEKL----NEFSQGTGLGLTISRAIVE 631

Query: 787 ANMGKFYIFSTPAKGTLIEIIFPL 810
           A  G+    S    G+      PL
Sbjct: 632 AAGGEVGFTSKLGVGSTFWAWLPL 655



 Score = 45.0 bits (105), Expect = 0.049,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 53/168 (31%), Gaps = 27/168 (16%)

Query: 450 EVMQL--CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPS 507
           E  +L   SI      GI I +  G++ S N    +++G              +      
Sbjct: 25  EEQRLFTESIYACLPVGIEIYDAHGVLRSINDHALRMYGVDDR----TSVVNIVNLYKSP 80

Query: 508 VMNHYLTEILSLDLRQTLEKITLGST-----------KEEKLLSLRIIIKKLPFSS--CY 554
            ++  L   +      +LE                  K+  +  +++I           +
Sbjct: 81  FVDSELLARIQSGEDISLEFEYDFDRVNKDAYYSSHNKDTMIYGVKVIPIWSRKKHLIGH 140

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESS-----HKSDF---LARVSH 594
            L  +D++  K+ + +   +KK  E          K D    ++ + H
Sbjct: 141 ILLANDMTSVKEVEFRTEESKKNLEMAKKAQDLIAKRDLAMKVSNIVH 188


>gi|298529762|ref|ZP_07017165.1| GAF sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298511198|gb|EFI35101.1| GAF sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 622

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 72/256 (28%), Positives = 130/256 (50%), Gaps = 8/256 (3%)

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
            +++ D  + + ++  L+ AK  AE+ +S KS FLA +SHEIRTP+  ++G S+++    
Sbjct: 214 MVSLRDHEKLRIQEQNLAAAKNEAEEATSAKSMFLATMSHEIRTPMNGVMGLSQLLLETP 273

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                N      A  I  SG  +LDI+N++LD SKIE+ ++ L      L   + E   +
Sbjct: 274 L----NTEQRHLAGLIRSSGENLLDIINNILDFSKIEADRLVLEQVDFDLRTMMDEITHI 329

Query: 675 VQLYANEKRILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGG-QIIIS--TT 730
           +++ A EK I   +     +   +  D   ++QI  N+  NA+ FT  GG ++ +S  T 
Sbjct: 330 MKINAGEKDIDFVSRIDPALETSLQGDPGRLRQILFNLSGNAVKFTAQGGVRLEVSPLTK 389

Query: 731 HTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMG 790
              + +++  + DTG G+      +    + Q  +S      G+GLGL ++K++V+   G
Sbjct: 390 LEKSIQILFEITDTGPGIDQETKNRLFTAYQQAESSTSREYGGSGLGLSISKSLVELMHG 449

Query: 791 KFYIFSTPAKGTLIEI 806
           +  + S+P  G+    
Sbjct: 450 EIGLESSPGTGSTFWF 465


>gi|254487694|ref|ZP_05100899.1| signal transduction histidine kinase [Roseobacter sp. GAI101]
 gi|214044563|gb|EEB85201.1| signal transduction histidine kinase [Roseobacter sp. GAI101]
          Length = 568

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 83/361 (22%), Positives = 163/361 (45%), Gaps = 21/361 (5%)

Query: 457 ILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
           +    S+ + +I+R   I   N A  +                 L   +  V++  +  I
Sbjct: 219 LFNTMSEPVVMIDRHRNITLMNTAAKR---------------SGLPHESGPVLSKIIENI 263

Query: 517 LSLDLRQTLEKITLG-STKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAK 575
            +L+  + +  +T+G    E ++  L   +     +  +S+T  DI++       L  A 
Sbjct: 264 ENLNTSEDVAHLTIGQRVYEPRIRELESPLDPSGAALGWSITFVDITDRIAISAALEEAL 323

Query: 576 KIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGN 635
           + A++ +  K +F++ VSHE+RTPLT++ G   +  + R G + +P      N   R+G 
Sbjct: 324 RQADEANKAKDEFISVVSHELRTPLTSLTGGLTLALSGRLGDVADP-IRSLLNIAHRNGV 382

Query: 636 LVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT-SFANNI 694
            +  +V+++L + KI+   + L  +PV L   + E+    +++A+++ + +   +    +
Sbjct: 383 RLSRLVDNILLVQKIDIDALILESKPVDLGHLLEESFEENKMFASKRGVQLALGNIMPAV 442

Query: 695 PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELE 754
             I  D  +++QI  N++SNAI F+     +   T    N +V L +++ G G+      
Sbjct: 443 --ITGDAFAIRQIIDNLISNAIKFSNENSVVE-GTLIAMNGQVRLSIKNAGRGIPEGMES 499

Query: 755 KAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
           +    F Q+ NS Q   +G+GLGL ++K +     G     S    GT   + F L D  
Sbjct: 500 QVFGRFEQVENSGQSSTQGSGLGLHISKKLAKQMSGDISYESQLDVGTTFHVEFLLADQQ 559

Query: 815 H 815
            
Sbjct: 560 A 560


>gi|37781575|gb|AAP35032.1| SrrB [Staphylococcus aureus]
          Length = 583

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 62/376 (16%), Positives = 154/376 (40%), Gaps = 41/376 (10%)

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
            +   +   +        S++ +  +G+  IN    I+ +N+  + +             
Sbjct: 242 TEIEEHVDALSTSKNIRDSLINSMVEGVLGINESRQIILSNKMANDIMD----------- 290

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK---KLPFSSCY 554
              ++++  + +   + +       +  +          +   +        +    S  
Sbjct: 291 --NIDEDAKAFLLRQIEDTFKSKQTEMRDLEM-----NARFFVVTTSYVDKIEQGGKSGV 343

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
            +T+ D++                      K DF+A VSHE+RTP++ + G++E I +  
Sbjct: 344 VVTVRDMT--------------NEHNLDQMKKDFIANVSHELRTPISLLQGYTESIVDGI 389

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     E    +      +  +VN+LL+++++++  ++++ E   +   + +    
Sbjct: 390 VTE--PDEIKESLAIVLDESKRLNRLVNELLNVARMDAEGLSVNKEVQPIAALLDKMKIK 447

Query: 675 VQLYANEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
            +  A++  + +  ++     R+ + D+  + Q+  N++ NA  +T  G +I I+     
Sbjct: 448 YRQQADDLGLNMTFNYCKK--RVWSYDMDRMDQVLTNLIDNASRYTKPGDEIAITCDENE 505

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
           +E++ L ++DTG G+    L++    F ++  ++    +GTGLGL + K +++ + G   
Sbjct: 506 SEDI-LYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQGTGLGLFICKMIIEEHGGSID 564

Query: 794 IFSTPAKGTLIEIIFP 809
           + S   KGT   I  P
Sbjct: 565 VKSELGKGTTFIIKLP 580


>gi|328872878|gb|EGG21245.1| histidine kinase [Dictyostelium fasciculatum]
          Length = 1240

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 78/310 (25%), Positives = 133/310 (42%), Gaps = 34/310 (10%)

Query: 528 ITLGSTKEEKLLSLRIIIKKLPFSS----CYSLTMHDISEWKQEK--------------- 568
             L        LSL + IK+L   +     + +   DI+  K  +               
Sbjct: 591 EILEEENGSTDLSLDVFIKELFDENNTSLGFMVVFRDITASKAIQSSLEEANNQLSIKSQ 650

Query: 569 ------NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
                  +L  A+  A K    K+ F A +SHEIRTPL  +IG +E++            
Sbjct: 651 LEIQKNKELIDARDRALKAIKIKTQFTATISHEIRTPLNGLIGMTEMLLTTNLTK----E 706

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             E A  I +SG+++  + +D+LD SKIE  K+ L          +   +S + +   +K
Sbjct: 707 QREIAETIQKSGDILHSVTSDVLDFSKIEESKLELEMIEFDFIGCIENTLSTLSMSCVDK 766

Query: 683 RILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSG---GQIIISTTHTSNEEVI 738
            I     F +N+  +I+ D   ++QI LN+ SNA+ +T  G     + I        ++ 
Sbjct: 767 PIEFLLHFEDNVAIKIIGDPIRLRQIILNVGSNAVKYTNQGHIYTHVSILERVNGKIKIK 826

Query: 739 LRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF-ST 797
           + V DTG+G+   + ++  +PF Q+  S   R  GTGLGL +   +     G+  +  S 
Sbjct: 827 VSVEDTGIGIPTEKRDRLFEPFSQVDASITRRYGGTGLGLAICDRLTKLMNGEMTLEKSV 886

Query: 798 PAKGTLIEII 807
             +G+   + 
Sbjct: 887 EGQGSTFSMT 896


>gi|303327881|ref|ZP_07358321.1| sensor histidine kinase/response regulator [Desulfovibrio sp.
           3_1_syn3]
 gi|302862242|gb|EFL85176.1| sensor histidine kinase/response regulator [Desulfovibrio sp.
           3_1_syn3]
          Length = 976

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 85/254 (33%), Positives = 126/254 (49%), Gaps = 10/254 (3%)

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNP 621
           S+ ++ +     AK+ AE+ S  KSDFLAR+SHEIRTP+ AI+G + +            
Sbjct: 300 SDLREAEKNALAAKEQAEEASRAKSDFLARMSHEIRTPMNAILGITYLCLQT----THEN 355

Query: 622 RYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANE 681
           + + Y   I  +G  +L I+ND+LD+SKIE+GKM L  E  +L E V     L       
Sbjct: 356 KQLYYLRKILSAGRGLLGIINDILDVSKIEAGKMTLQNEAFALQELVENLSDLCGALVGG 415

Query: 682 KRILIRTSFANNI-PRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNE----E 736
           K I +      N+   +  DL  + Q+  N+L NA+ FT  G ++++             
Sbjct: 416 KNIEVLFHVDPNVFVTVEGDLLRLTQVLTNLLGNAVKFTEKG-RVVLRIEELGRGADTIT 474

Query: 737 VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFS 796
           + + V DTG+G+T  EL +  KPF Q   S   R  GTGLGL + +  V    G+  + S
Sbjct: 475 LGISVSDTGIGLTEEELARLFKPFEQADGSITRRYGGTGLGLVICQRFVRMMGGELEVRS 534

Query: 797 TPAKGTLIEIIFPL 810
            P KG+       L
Sbjct: 535 EPGKGSAFSFSLTL 548


>gi|260175269|ref|ZP_05761681.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|315923502|ref|ZP_07919742.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313697377|gb|EFS34212.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 543

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 82/382 (21%), Positives = 166/382 (43%), Gaps = 21/382 (5%)

Query: 436 EDVDTRINKRKMEIEVMQLCSILEATSDGIAI--INREGIILSTNRAVSKLFGYPVEDIL 493
           E       +R++      L SI+      I +   +    +L  N +++  +G       
Sbjct: 162 EIAVREYKEREVRASKT-LSSIMNNMGVDIYVNSFDSHD-MLYANESMAAPYGGIEHFEG 219

Query: 494 RKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK-EEKLLSL-RIIIKKLPFS 551
           +K +    +  T          ++  + + T           ++    +       +   
Sbjct: 220 KKCWQALYKDKTGECEFCPKKHLIDENGQPTKVYSWDYQRPFDKCWFRVFSAAFAWIDGQ 279

Query: 552 SCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIK 611
             + +T  DI+  K  + +L  AK+ AE     KS FLA +SHEIRTPL AI+GF+ ++ 
Sbjct: 280 IAHVITSVDINHQKTIEEELRVAKEKAENLDRLKSAFLANMSHEIRTPLNAIVGFASLLV 339

Query: 612 NQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEA 671
                        +Y + +  +  L+L +++D+LD+SKIE+G ++   + + +     + 
Sbjct: 340 ESD----NKKERQDYVDIMQENTELLLQLISDILDLSKIEAGTLDFTMDHLGIKSFCEDI 395

Query: 672 ISLVQLYANEKRILIRTSFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
           I    +   +K + +    A ++P   I  D + + Q+  N ++NA+ FT  G QI++  
Sbjct: 396 IRNYDIK-EDKPVPVL--LAPDLPEYYIYTDKKRLMQVITNFINNALKFTNEG-QIVLEY 451

Query: 730 THT-SNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
            +   + E+   V DTG+G+   ++ +    F ++ +      +GTGLGL + +++++  
Sbjct: 452 HYKAESNEIEFAVTDTGMGIAPDKVNQVFDRFVKLNSF----SKGTGLGLSICRSIIEHL 507

Query: 789 MGKFYIFSTPAKGTLIEIIFPL 810
            G   + S    G+      PL
Sbjct: 508 GGTIGVESEMGNGSRFWFTHPL 529


>gi|209549555|ref|YP_002281472.1| multi-sensor hybrid histidine kinase [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209535311|gb|ACI55246.1| multi-sensor hybrid histidine kinase [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 867

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 102/664 (15%), Positives = 200/664 (30%), Gaps = 50/664 (7%)

Query: 175 FSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEKYDIFSQQSPPPHL 234
            S   GF  V   R  +             + + + K          Y   +       +
Sbjct: 69  VSSVIGFIEVMPQRQSDSLARAFLNSHPDGTLITDEKGRII-YANAAYGALTGARKATEV 127

Query: 235 RMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQN 294
           +    + S           L           E     +      N +     +    L  
Sbjct: 128 QTLETLLSRHRESNEALYRLVNGLREGKEGREEFRLLRAVGPGSNSSGAHWYRLKARLLQ 187

Query: 295 NSKESFEYLSHRNHPSLSAYFDEGENLTPET------VDKCPIPFF-VYSHGNLFYANPS 347
             +   + L       ++   D+ E    E       +D  P  FF     G +FY N +
Sbjct: 188 PEENGGKPLQIWQITDITTERDDQERFFKELQNAIDYLDHAPAGFFSAGRKGEIFYLNAT 247

Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNR 407
                               ++     ++         +          +  L  ++   
Sbjct: 248 LAEWLGLD-----LTKFVPGSMTIGDVVAGEGLALIQSVQAEPGLKKTVTLDL-DLRKTN 301

Query: 408 ENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAI 467
             SL +  I    + +         I      +    +      M+       T   IA 
Sbjct: 302 GQSLPVQIIHSVTSMRDGAPGESRTIVLGREKSEAGGQSASAAAMRFTRFFNNTPMAIAS 361

Query: 468 INREGIILSTNRAVSKLFG--YPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTL 525
           ++ EG IL TN    KLF      +D+ + P    + Q +                    
Sbjct: 362 VDGEGRILRTNAPFLKLFSGVVSRDDLEKAPHLETIVQESDRPQLAEALAAAKDRQGDIA 421

Query: 526 EKITLGSTKEEKLLSLRIIIKKLPFSSC----YSLTMHDISEWKQEKNKLSHAKKIAEKE 581
              T   T E +     +                +   +++E K  + +++  +K+    
Sbjct: 422 PLDTRTPTDEARYFRFYVNAVIDQSDEAPEEAAIVYAVEVTEQKALEAQMAQTQKM---- 477

Query: 582 SSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIV 641
            +        ++H+    LTAI+  S+ +  Q      +  + +    I R+ N    +V
Sbjct: 478 -NAVGTLAGGIAHDFNNVLTAILLSSDHLLLQARPA--DASFADLME-IKRNANRAAVLV 533

Query: 642 NDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADL 701
             LL  S+    K  +    ++L + V +   LV    +   + +   +  ++  +  DL
Sbjct: 534 RQLLAFSR----KQTMRPSVLNLTDVVGDLRMLVDRLLSGTNVKLDVQYGRDLWPVKTDL 589

Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTT--------------HTSNEEVILRVRDTGVG 747
              +Q+ +N+  NA    P GG + + T                 + + V++ V D G G
Sbjct: 590 SQFEQVLINLCVNARDAMPEGGTLTLRTRNLTAAEVSAFNYSYMPAEDMVLIEVADNGTG 649

Query: 748 MTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEII 807
           +    ++K  +PF    +     G+GTGLGL +   +V  + G     S   KGT   + 
Sbjct: 650 IAPEIMDKIFEPFFTTKD----VGKGTGLGLAMVYGIVKQSGGYIQPESEVGKGTTFRVF 705

Query: 808 FPLY 811
            P +
Sbjct: 706 LPRH 709



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/385 (11%), Positives = 92/385 (23%), Gaps = 22/385 (5%)

Query: 89  IDAHGYLKEISEELPKTIGNYAF------KMIGMRLCDVSDILHIDPNNHIGDLLKRQNT 142
            D  G +   +       G          + +  R  + ++ L+   N  + +  + +  
Sbjct: 102 TDEKGRIIYANAAYGALTGARKATEVQTLETLLSRHRESNEALYRLVNG-LREGKEGREE 160

Query: 143 WYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDK 202
           +     + P   ++      L A  +          + + I  +    +D     K L  
Sbjct: 161 FRLLRAVGPGSNSSGAHWYRLKARLLQPEENGGKPLQIWQITDITTERDDQERFFKELQN 220

Query: 203 KFSHLHEIKKGHSSVEKEK---YDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLK-TEK 258
              +L     G  S  ++    Y   +          K    S+T       + L   + 
Sbjct: 221 AIDYLDHAPAGFFSAGRKGEIFYLNATLAEWLGLDLTKFVPGSMTIGDVVAGEGLALIQS 280

Query: 259 YPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFE----YLSHRNHPSLSAY 314
                  + ++    D    N      +              E     L      +    
Sbjct: 281 VQAEPGLKKTVTLDLDLRKTNGQSLPVQIIHSVTSMRDGAPGESRTIVLGREKSEAGGQS 340

Query: 315 FDEGENLTPETVDKCPIPFF-VYSHGNLFYANPSFLLLT-KYKSVDDIEIAGGLSTLLDA 372
                       +  P+    V   G +   N  FL L     S DD+E A  L T+   
Sbjct: 341 ASAAAMRFTRFFNNTPMAIASVDGEGRILRTNAPFLKLFSGVVSRDDLEKAPHLETI-VQ 399

Query: 373 PKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNG 432
                  A                  R      +               +          
Sbjct: 400 ESDRPQLAEALAAAKDRQGDIAPLDTRT---PTDEARYFRFYVNAVIDQSDEAPEEAAIV 456

Query: 433 IEPEDVDTRINKRKMEIEVMQLCSI 457
              E  + +  + +M  +  ++ ++
Sbjct: 457 YAVEVTEQKALEAQM-AQTQKMNAV 480


>gi|305666165|ref|YP_003862452.1| sensor histidine kinase [Maribacter sp. HTCC2170]
 gi|88707663|gb|EAQ99904.1| sensor histidine kinase [Maribacter sp. HTCC2170]
          Length = 334

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 59/245 (24%), Positives = 112/245 (45%), Gaps = 9/245 (3%)

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
           K+ +      ++        + DFL  VSHE++TPL  + G+   + +            
Sbjct: 83  KKIEIDTLKIREEY------RKDFLGNVSHELKTPLFTVQGYILTLLDGAMD--DKNIRK 134

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
           +Y    ++    ++ IV DL  I+K+E G +NL      + E +     L+++ AN+K+I
Sbjct: 135 KYLQRANKGVERLIYIVRDLDMITKLEVGDLNLELVEFDIIELIQNVFDLLEMKANKKKI 194

Query: 685 LIRTSFA-NNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
            +       +   + AD   ++Q+  N+L N+I +    G   IS  +    +VI+RV D
Sbjct: 195 TLTFDMDYADSVPVYADREKIQQVLTNLLVNSIKYGQENGTTEISVENLIKNKVIVRVTD 254

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
            G G++   + +  + F ++  S      G+GLGL + K +++A+  K Y+ S    G+ 
Sbjct: 255 NGEGISEQHIPRLFERFYRVDKSGSRNEGGSGLGLAIVKHIIEAHDEKIYVESAEGVGSE 314

Query: 804 IEIIF 808
                
Sbjct: 315 FSFTL 319


>gi|91975976|ref|YP_568635.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisB5]
 gi|91682432|gb|ABE38734.1| Hpt sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisB5]
          Length = 880

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 71/234 (30%), Positives = 128/234 (54%), Gaps = 8/234 (3%)

Query: 585 KSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDL 644
           KS+FLA +SHEIRTP+ A++G +  +   +  P            I  SG+ +L I++D+
Sbjct: 340 KSNFLAMMSHEIRTPMNAVLGLASNLLETKLAP----EQRRAVEGIHSSGDGLLKILDDI 395

Query: 645 LDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPR-ILADLRS 703
           L+ S++E+G++++     S    V +++ ++   A  K + IRT  ++N+P+ ++ D   
Sbjct: 396 LEYSRLEAGRLSIELITFSPINVVKQSLDMIGPRAAAKGLTIRTDLSDNLPQALIGDPGR 455

Query: 704 VKQIALNILSNAIHFTPSGGQII-ISTTHTSNEEVIL--RVRDTGVGMTNYELEKAMKPF 760
           ++Q+ LN+LSNA+ FTPSG  ++ ++          +   V DTG+G+   ++E     F
Sbjct: 456 IRQVLLNLLSNAVKFTPSGTIVVAVNCVSDDRSTARIQWTVTDTGIGIDPDKIESLFDDF 515

Query: 761 GQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTS 814
            Q  NS + R  G+GLGL +++ +++   G   + STP  G+       L  TS
Sbjct: 516 VQADNSIRRRFGGSGLGLAISRRLIEQMGGSINVTSTPGVGSSFNFTLALAITS 569


>gi|312903452|ref|ZP_07762632.1| PAS domain S-box [Enterococcus faecalis TX0635]
 gi|310633328|gb|EFQ16611.1| PAS domain S-box [Enterococcus faecalis TX0635]
 gi|315147398|gb|EFT91414.1| PAS domain S-box [Enterococcus faecalis TX4244]
 gi|315577852|gb|EFU90043.1| PAS domain S-box [Enterococcus faecalis TX0630]
          Length = 591

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 73/364 (20%), Positives = 160/364 (43%), Gaps = 32/364 (8%)

Query: 452 MQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNH 511
            Q   +L+    G+ II+ +G +   N  + ++ G        K       +        
Sbjct: 250 EQFHELLDELMIGVFIIDTQGRLRLLNPKMQEMLGLSA-----KNMQSNYLEVIQDADLI 304

Query: 512 YLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCY--SLTMHDISEWKQEKN 569
           +L   +  +     ++IT+        L L +       ++ Y      +D++  +Q + 
Sbjct: 305 HLIHQVVAEKNSLHQEITVTQGPTPLRLDLSLRYLDDQSANDYQVLGIAYDLTRVRQLE- 363

Query: 570 KLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIE-YAN 628
                          + DF++ VSHE++TP+T+++GF+E + +   G   +P+ ++ + +
Sbjct: 364 -------------KMQKDFVSNVSHELKTPVTSLLGFTETLID---GAKEDPKVLDQFLH 407

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            + +    +  ++ ++L++S+  S  +    + ++L++ ++E +   Q     K++    
Sbjct: 408 IMQKDAQRLQQLIQEILELSR-GSATIPYAEQEITLEKFITEILGSYQQQLVAKQLK--- 463

Query: 689 SFANNIPR--ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGV 746
           +  + +P             I  N++ NAI ++   GQI IS     N+++ L V+DTG+
Sbjct: 464 TVVHGLPESQFFTKYELFYPIVKNLIENAIQYSQENGQITISYAIE-NQQLRLSVQDTGI 522

Query: 747 GMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEI 806
           G++  + E+  + F ++  ++     GTGLGL + +   +   GK  I S    GT   I
Sbjct: 523 GISQKDQERIFERFYRVDKARSRHSGGTGLGLAIVQNYTELLGGKIAIDSHLGLGTTFTI 582

Query: 807 IFPL 810
             PL
Sbjct: 583 TLPL 586


>gi|254444274|ref|ZP_05057750.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198258582|gb|EDY82890.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 748

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 69/256 (26%), Positives = 116/256 (45%), Gaps = 11/256 (4%)

Query: 558 MHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGP 617
             D  E ++   +L+ A K AE  +  KS+FLA +SHEIRTP+  ++G   +++      
Sbjct: 67  ARD--ELEKSNQELTVAMKAAESANVAKSEFLATMSHEIRTPMNGLVGVLTLLEEDLPF- 123

Query: 618 LGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQL 677
                  +         + +L ++ND+LD SKIE+GKMNL     +          L   
Sbjct: 124 ----EKRKLLGTAQECADDLLVLINDILDFSKIEAGKMNLESVEFNALNLAESICELHSS 179

Query: 678 YANEKRILIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQII---ISTTHTS 733
            A++K + I +    +     + D   ++Q+  N+ SNAI FT  G  ++   I +    
Sbjct: 180 SAHKKGLEITSDSDPSSAFCSIGDPLRLRQVISNLTSNAIKFTNQGEIVVTPSIVSKDCE 239

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
              +   + D+G+G+T    EK    F Q  +S      GTGLGL ++K +++   G   
Sbjct: 240 QNYLRFEITDSGIGITKETQEKLFNAFTQANSSTTREFGGTGLGLAISKKLIEIMGGDIG 299

Query: 794 IFSTPAKGTLIEIIFP 809
           + S    G+      P
Sbjct: 300 VSSKEGTGSTFWFEIP 315


>gi|78048721|ref|YP_364896.1| two-component system sensor histidine kinase-response regulator
            hybrid protein [Xanthomonas campestris pv. vesicatoria
            str. 85-10]
 gi|78037151|emb|CAJ24896.1| two-component system sensor histidine kinase-response regulator
            hybrid protein [Xanthomonas campestris pv. vesicatoria
            str. 85-10]
          Length = 1194

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 120/828 (14%), Positives = 231/828 (27%), Gaps = 114/828 (13%)

Query: 84   RFTWNIDAHGYLKEIS---EELPK--TIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLK 138
            +  W  D  G   + +     + +    G    ++ G+ L D      +D    +G    
Sbjct: 233  KVLWVADFDGNPVQFNTVGRPMARRWQSGEDTAQVRGVLLRDRLGRYWLDTATGLGMSSS 292

Query: 139  RQNTWYGKTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGK 198
                       +   G      I         R          G +       D  AL  
Sbjct: 293  DGGVERVPVYSFSAHGLVNRNWIT----AYQDREGGLWFASLEGGLWHLPPRWDTFALFS 348

Query: 199  RLDKKFSHLHE------IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDD 252
                    L               +         +   P   R++ +++ +         
Sbjct: 349  HRADVPQSLANPSVVATAPSVTGGIWLVGTRGTLEHFDPVTGRVEPRLAPVDPERIPDTV 408

Query: 253  VLKTEKYPLLTSEESSLPEQEDFHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHP--- 309
            +   +    +  +E  +                 Q       +                 
Sbjct: 409  IESRQGMVWIGVQERLVRYNPKTGEARRWPLLGHQDSAADLEDVGRPGRMAEDAQGRIWV 468

Query: 310  ---SLSAYFDEGENLTPETVDKCPIP--------FFVYSHGNLFYANPSFLLLTKYKSVD 358
               +        E     T+D               +   G ++ +N + L      +  
Sbjct: 469  ALLTHGVQLWSSEGQLLRTLDYGSHGLKALTVLDMRIGPDGQIWLSNNAGLWRWDPLADQ 528

Query: 359  --DIEIAGGLSTLLDAPKLSDNNA---IKPVMLYRSDR------------TCIAASARLH 401
               +  A  L T +                +  Y  D                   +   
Sbjct: 529  FVPVRGAPSLPTYVFRQGDGGIVWIGLAGQLRRYLWDGKQLTHLDTLGKDQEFPMVSPTG 588

Query: 402  TIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
             +      +   +     + +   + +    +      + +    +         IL  T
Sbjct: 589  LVIDAGGVAWVSSHRGLIRVDPGSKLVRVYDVHDGLPSSPMQVATLVQAST--GQILGGT 646

Query: 462  SDGIAIINR----------EGIILSTN-RAVSKLFGYPV-------EDILRKPFTVFLEQ 503
            SDGI + +           + +I   + R   +             +          +  
Sbjct: 647  SDGIVVFDPATMRPNLRRPQLLIERVSLRRGERELDVTGKAPLQVQDGDRDLHIVARMPT 706

Query: 504  NTPSVMNHYL-----------------TEILSLDLRQTLEKITLGSTKEEKL-------L 539
             T      Y                    + S            G T +           
Sbjct: 707  FTNPESTSYRFRLSGYDPDWVDVGSTGERLFSRLPSGHYTLEVQGRTADGIWSASQIVRF 766

Query: 540  SLRIIIKKLPFSSCYSLTM------------HDISEWKQEKNKLSHAKKIAEKESSHKSD 587
             +       P+       +                          H +++AE+ S  K+ 
Sbjct: 767  QVLPPWWLSPWGLGLLAVLSVCVIAAAILLYRRRLRRLNAWQLAVHKQELAEQASLAKTR 826

Query: 588  FLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDI 647
            FLA + HE+RTP+T ++G SE++         +     Y   I R+G  +L +VND LD+
Sbjct: 827  FLATLGHEVRTPMTGVLGMSELLLKT----TQDATQRSYTESIRRAGAHLLRLVNDALDL 882

Query: 648  SKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFA-NNIPRILADLRSVKQ 706
            ++IESG++ L F+P S+ + V+E  +L+   A E+ +                D   ++Q
Sbjct: 883  ARIESGRLELDFQPFSVRQLVAEVEALMAPLAQERGLRFSLEIGLLGDITASGDSTRIRQ 942

Query: 707  IALNILSNAIHFTPSGGQIIISTTHTSNEE---VILRVRDTGVGMTNYELEKAMKPFGQI 763
            I LN+L+NAI FT  G   +++   T+      +   V DTG G+   +  +  + F Q 
Sbjct: 943  ILLNLLNNAIKFTERG---VVALKLTTLGSYQGLRFEVADTGPGINAEQKARLFQRFEQG 999

Query: 764  PNS-QQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
              +    R  G+GLGL + + +  A  G   + S    GT   +  PL
Sbjct: 1000 DGAKTTSRYGGSGLGLAICQELAMAMGGHIEVISRLGAGTRFVVDLPL 1047


>gi|84385826|ref|ZP_00988856.1| putative sensor histidine kinase [Vibrio splendidus 12B01]
 gi|84379142|gb|EAP95995.1| putative sensor histidine kinase [Vibrio splendidus 12B01]
          Length = 808

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 81/278 (29%), Positives = 131/278 (47%), Gaps = 6/278 (2%)

Query: 535 EEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSH 594
           E  ++ L I +  L F+  +++ +  + E K+       A   AEK +  KS FLA +SH
Sbjct: 238 EGVIVKLIITLALLTFAFSFAIFIFRVFELKRNNLAYQEAADKAEKANEAKSLFLATMSH 297

Query: 595 EIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGK 654
           E+RTP+  ++G +++IK             + A  I  SG  ++ I+ND+LD SK+E GK
Sbjct: 298 ELRTPMNGVLGIAQIIKEDSQSADT----RQQAQIIIDSGQHLVTILNDILDFSKVEQGK 353

Query: 655 MNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT-SFANNIPRILADLRSVKQIALNILS 713
           M L + P S+ + V+     +   A +K +            +++ D    +QI  N+  
Sbjct: 354 MELEYSPFSVADVVTHLDKTLTPLAEDKGLAFTIKDHIPTHIQLIGDSARTRQILFNLAG 413

Query: 714 NAIHFTPSGG-QIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGE 772
           NA+ FT SG  ++           V + V DTG+G+   ++E     F Q   S   +  
Sbjct: 414 NAVKFTESGKVEVEFLIAPPPPPSVNILVTDTGIGIAEDKIEHIFTAFEQAELSTTRKFG 473

Query: 773 GTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
           GTGLGL + K +V+   G   + S    GT   I  PL
Sbjct: 474 GTGLGLSIVKQLVELMGGTITVTSRLNFGTRFAISLPL 511


>gi|255601763|ref|XP_002537746.1| two-component sensor protein histidine protein kinase, putative
           [Ricinus communis]
 gi|223515241|gb|EEF24637.1| two-component sensor protein histidine protein kinase, putative
           [Ricinus communis]
          Length = 263

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 74/261 (28%), Positives = 127/261 (48%), Gaps = 16/261 (6%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E +Q K  L          S +KS+FLA +SHE+RTPL +++  ++ + +   G L   +
Sbjct: 5   EVEQAKLALEEKATQLALSSKYKSEFLANMSHELRTPLNSLLILAQQLSDNPEGNLS-AK 63

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
            +E+A  I  SG+ +L ++ND+LD+SKIESG + L           +      +  A  K
Sbjct: 64  QVEFAKTIHGSGSDLLTLINDILDLSKIESGTVTLDVSEYRFSNLRNYVDRTFRHMAEAK 123

Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE----- 736
            +      A+N+P  ++ D   ++Q+  N+LSNA  FT S G + ++ +  ++       
Sbjct: 124 HLGFSVELADNLPTAVMTDTTRLQQVLKNLLSNAFKFT-SHGNVSLTISLVTSGWTADHP 182

Query: 737 --------VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDAN 788
                   +   VRDTGVG+   +L+   + F Q   S   +  GTGLGL +++ +    
Sbjct: 183 HLLHADAVLAFSVRDTGVGIPADKLQLIFEAFQQADGSTARKYGGTGLGLSISRELARLL 242

Query: 789 MGKFYIFSTPAKGTLIEIIFP 809
            G+  + ST   G+   +  P
Sbjct: 243 GGEIRVESTVNIGSTFTLYLP 263


>gi|153930827|ref|YP_001382755.1| sensor histidine kinase [Clostridium botulinum A str. ATCC 19397]
 gi|153937672|ref|YP_001386306.1| sensor histidine kinase [Clostridium botulinum A str. Hall]
 gi|170754453|ref|YP_001780006.1| sensor histidine kinase [Clostridium botulinum B1 str. Okra]
 gi|152926871|gb|ABS32371.1| sensor histidine kinase [Clostridium botulinum A str. ATCC 19397]
 gi|152933586|gb|ABS39085.1| sensor histidine kinase [Clostridium botulinum A str. Hall]
 gi|169119665|gb|ACA43501.1| sensor histidine kinase [Clostridium botulinum B1 str. Okra]
          Length = 464

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 70/240 (29%), Positives = 123/240 (51%), Gaps = 8/240 (3%)

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           L++      K+   K++F++ VSHE+RTPLT+I G++  +       +      +    I
Sbjct: 230 LNYMADEIVKKDQLKNEFISSVSHELRTPLTSIKGWAITL---NSNEVDKEILKDGLKII 286

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
           +     +  +V +LLD SK  SGKM L+ E +S+ E +      ++ YA   RI  + + 
Sbjct: 287 EDESERLSGMVEELLDFSKFVSGKMKLNKEEISICEIIDTVRKQLEPYAYRNRINFKATC 346

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
            N +P I  D   +KQ+ +N+L NA  FTP GG + ++T +     + + V+DTGVG++ 
Sbjct: 347 INKLPNIYGDRNRIKQVLINLLDNAFKFTPEGGLVELNTKYEEE-YITIVVKDTGVGISK 405

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            +L +  + F +  + +       G+GL +   ++  + G  +I S   KGT I I  P+
Sbjct: 406 EDLPRVKEKFYKGNSGKSKN----GIGLSICDEIIKLHNGVLHIESEENKGTTISIKLPM 461


>gi|148378356|ref|YP_001252897.1| sensor histidine kinase [Clostridium botulinum A str. ATCC 3502]
 gi|148287840|emb|CAL81906.1| two-component sensor kinase [Clostridium botulinum A str. ATCC
           3502]
          Length = 464

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 70/240 (29%), Positives = 123/240 (51%), Gaps = 8/240 (3%)

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           L++      K+   K++F++ VSHE+RTPLT+I G++  +       +      +    I
Sbjct: 230 LNYMADEIVKKDQLKNEFISSVSHELRTPLTSIKGWAITL---NSNEVDKEILKDGLKII 286

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
           +     +  +V +LLD SK  SGKM L+ E +S+ E +      ++ YA   RI  + + 
Sbjct: 287 EDESERLSGMVEELLDFSKFVSGKMKLNKEEISICEIIDTVRKQLEPYAYRNRINFKATC 346

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTN 750
            N +P I  D   +KQ+ +N+L NA  FTP GG + ++T +     + + V+DTGVG++ 
Sbjct: 347 INKLPNIYGDRNRIKQVLINLLDNAFKFTPEGGLVELNTKYEEE-YITIVVKDTGVGISK 405

Query: 751 YELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFPL 810
            +L +  + F +  + +       G+GL +   ++  + G  +I S   KGT I I  P+
Sbjct: 406 EDLPRVKEKFYKGNSGKSKN----GIGLSICDEIIKLHNGVLHIESEENKGTTISIKLPM 461


>gi|156743078|ref|YP_001433207.1| PAS/PAC sensor hybrid histidine kinase [Roseiflexus castenholzii
           DSM 13941]
 gi|156234406|gb|ABU59189.1| PAS/PAC sensor hybrid histidine kinase [Roseiflexus castenholzii
           DSM 13941]
          Length = 1187

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 116/621 (18%), Positives = 215/621 (34%), Gaps = 54/621 (8%)

Query: 215 SSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQED 274
           S+ E+E     ++Q       + +++  L        D +       L     +L ++ +
Sbjct: 377 SAFERELSRRRTRQELAQWHDVISELFYLIVSALDHADDMPRANLLFLQRIRLALAQERE 436

Query: 275 FHTINLNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETV-------- 326
              I L   T +Q    L+ +               L+    E        V        
Sbjct: 437 RSRIELRTRTIEQSHTLLEISQSMLIAQDLKYLLEVLAQRLPELPVRDGYLVLYDDFPPT 496

Query: 327 DKCPIPFFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVML 386
                P +    G +  A      L              +   L          + P+  
Sbjct: 497 TNLEAPVW----GRVVLALHEGRRLPLPPDGISFPSRRIVPDALLCEHQPYAFIVTPLFF 552

Query: 387 YRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRK 446
              D   IA                 +            E            D R ++  
Sbjct: 553 GLRDFGFIAV----QVGPREGGVYHML----------AQEISSALQSVFLWRDYRRSEYA 598

Query: 447 MEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFG---YPVEDILRKPFTVFLEQ 503
                 +L +I+E     +   +  G  +  N  +  L G   +  ED        +   
Sbjct: 599 RRESEARLHTIVEHMPVALWAKDLNGRYIMQNSVMRTLTGDNSWKDEDSGGAALAEWAPY 658

Query: 504 NTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISE 563
              +                + E   L   +      +   ++     +     M DI+E
Sbjct: 659 EAWA----------REGRTVSFEHALLVQDQPRLFKHIIAPVQVDGTVTAILGLMFDITE 708

Query: 564 WKQEKNKLSHAKK-------IAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFG 616
            +  ++ L  AK+        AE  +  KS FL+ +SHE+RTPL +I+G++++++     
Sbjct: 709 QRTLEDSLRSAKESAEEARRAAEAANRAKSVFLSNISHELRTPLNSILGYAQILE---HD 765

Query: 617 PLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ 676
           P  +    +    I  SG  +L++++DLLD++KIE+GK+ +  +  +LD  ++    ++Q
Sbjct: 766 PTTSDYARKSLRVIQSSGEQLLNLIDDLLDLAKIEAGKIEVRPDRFALDAMLATICDMMQ 825

Query: 677 LYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEE 736
             A  + +      AN    ++ D + + Q+ +N+LSNAI FT  G  + +      +  
Sbjct: 826 ERAVARNLAFAREIANLPRLVVGDEKRLWQVLVNLLSNAIKFTREG-VVTLKVERLPDNR 884

Query: 737 --VILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYI 794
             V   V DTG+G+     E   +PF Q+      +  GTGLGL +A+ +V    G   +
Sbjct: 885 DKVRFEVIDTGIGIAPEYREVIFRPFEQLGAQTGEK--GTGLGLAIARELVTLMGGTLRV 942

Query: 795 FSTPAKGTLIEIIFPLYDTSH 815
            S P  G+      PL +   
Sbjct: 943 QSAPGAGSRFWFAIPLPEAPA 963


>gi|39997882|ref|NP_953833.1| sensory box histidine kinase [Geobacter sulfurreducens PCA]
 gi|39984827|gb|AAR36183.1| sensory box histidine kinase [Geobacter sulfurreducens PCA]
          Length = 770

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 117/743 (15%), Positives = 243/743 (32%), Gaps = 54/743 (7%)

Query: 90  DAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDPNNHIGDLLKRQNTWYGKTTL 149
           D  G L ++ E L    G    +++ + L ++        +  + +     +    +  L
Sbjct: 47  DGQGRLLDVGEGLCLLSGYPRAELLSLSLAELEAGGSGTWHTALINTATSGSPARAEIGL 106

Query: 150 WPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHE 209
              EG    V ++ A LP   +      FR   I   +RV  + R   +  D  F +  +
Sbjct: 107 RQREGGVRQVEVEAAFLPALGQV--ILTFRDSAIF--SRVLAELRQKSEECDTYFRNSLD 162

Query: 210 IKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDV-LKTEKYPLLTSEESS 268
           +    +        +           +   +        H DD          L  +   
Sbjct: 163 LLC-VADNSGYFRRLNPAWEEVLGFPLHELLGRKFIDLVHPDDREATMGAMSDLAHQRQV 221

Query: 269 LPEQEDFHTINLNQYTKKQYFGTLQNN--SKESFEYLSHRNHPSLSAYFDEGENLTPETV 326
                 +   + +    +       +   +              L    +    L  E +
Sbjct: 222 KDFTNRYRVRDGSYRWLEWRAAPAGDLVFAVARDVTDRILAQERLCRSEERYRLLFEEMM 281

Query: 327 DKCPIPFFVYSHG------NLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNA 380
             C +   +               N +F  +T  ++ D +    G + L   P    +  
Sbjct: 282 SGCALHELICDRDGNPADYRFLAVNGAFERMTGLRAADIV----GKTVLEVMPGTERHWI 337

Query: 381 IKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDT 440
            +   +  S             I              +      PE      +  +  + 
Sbjct: 338 ERYGDVALS-GRSAEFEEYAGAI-----------GRYYSVRAYCPERGKFAAVFNDITER 385

Query: 441 RINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVF 500
           R+ + ++  +      +L+   D IA  +RE   L  + A++++ G+P E  + +     
Sbjct: 386 RLMEDELRRQEQSHRLVLDNIPDIIARFDRELRHLYVSAAITRVTGFPPEHFIGRTNREI 445

Query: 501 -LEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSS--CYSLT 557
            +        +  + E+ S    Q LE          +     +I ++    S     + 
Sbjct: 446 GMPDELVDRWDAAINEVFSSGREQRLEFTYQSPRG-LRHFETTLIPERGADDSSAAVLVV 504

Query: 558 MHDISEWKQEKNKLSHAKKIAEK-----------ESSHKSDFLARVSHEIRTPLTAIIGF 606
            HDI+E K  +  +    +  E+            +     F + VSH++R PL  I GF
Sbjct: 505 NHDITELKNAELGMRQLNEELERRVGERTRELELSNRELDSFCSAVSHDLRAPLRHIAGF 564

Query: 607 SEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDE 666
           S V+       L +    +    I+     +  ++N+LL +S+  + +  L   PV+L  
Sbjct: 565 SRVVAEDYGDRLDHG-GRDLLTRIEGGAQRMDTLINELLSLSR--TNRSPLECHPVNLST 621

Query: 667 AVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQII 726
              + ++ ++  A ++  L+ T  A ++     D   ++ +  N+L NA  FT    +  
Sbjct: 622 IAMDVVTDLREAAPDR--LVDTEIAPDV-MAQCDGNLIRVVLSNLLGNAWKFTSRTERAR 678

Query: 727 ISTTHTSNE-EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMV 785
           I      +  +    VRD G G      +K   PF ++    +   EGTG+GL   + ++
Sbjct: 679 IEFGVIPSGDQQTFFVRDNGAGFDMNFADKLFVPFQRLHA--RDDYEGTGIGLATVQRII 736

Query: 786 DANMGKFYIFSTPAKGTLIEIIF 808
             + GK +  +   +G       
Sbjct: 737 HRHGGKIWADAAADRGATFWFTL 759



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 27/268 (10%), Positives = 75/268 (27%), Gaps = 21/268 (7%)

Query: 331 IPFFVYSH-GNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRS 389
             F V    G L        LL+ Y             +L +            ++   +
Sbjct: 41  AAFCVADGQGRLLDVGEGLCLLSGYP-----RAELLSLSLAELEAGGSGTWHTALINTAT 95

Query: 390 DRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEI 449
             +   A A +   Q               +A   P          +         ++  
Sbjct: 96  SGS--PARAEIGLRQREGG-----VRQVEVEAAFLPALGQVILTFRDSAIFSRVLAELRQ 148

Query: 450 EVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVM 509
           +  +  +    + D + + +  G     N A  ++ G+P+ ++L + F   +  +     
Sbjct: 149 KSEECDTYFRNSLDLLCVADNSGYFRRLNPAWEEVLGFPLHELLGRKFIDLVHPDDREAT 208

Query: 510 NHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKN 569
              ++++      Q  +       ++     L                  D+++    + 
Sbjct: 209 MGAMSDLAHQR--QVKDFTNRYRVRDGSYRWLEWRAAP--AGDLVFAVARDVTDRILAQE 264

Query: 570 KLSHAKKIAEKESSHKSDFLARVS-HEI 596
           +L  +++          + ++  + HE+
Sbjct: 265 RLCRSEERYRLLFE---EMMSGCALHEL 289



 Score = 47.3 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/189 (9%), Positives = 47/189 (24%), Gaps = 7/189 (3%)

Query: 88  NIDAHGYLKEISEELPKTIGNYAFKMIGMRLCDVSDILHIDP--NNHIGDLLKRQNTWYG 145
             D       +S  + +  G      IG    ++     +    +  I ++         
Sbjct: 412 RFDRELRHLYVSAAITRVTGFPPEHFIGRTNREIGMPDELVDRWDAAINEVFSSGREQRL 471

Query: 146 KTTLWPIEGTNLYVPIDLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFS 205
           + T     G  L    +   +P    +   S      + H      +     ++L+++  
Sbjct: 472 EFTYQSPRG--LRH-FETTLIPERGADD--SSAAVLVVNHDITELKNAELGMRQLNEELE 526

Query: 206 HLHEIKKGHSSVEKEKYDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSE 265
                +     +   + D F              ++  +   A             L + 
Sbjct: 527 RRVGERTRELELSNRELDSFCSAVSHDLRAPLRHIAGFSRVVAEDYGDRLDHGGRDLLTR 586

Query: 266 ESSLPEQED 274
                ++ D
Sbjct: 587 IEGGAQRMD 595


>gi|329725290|gb|EGG61777.1| sensor protein SrrB [Staphylococcus aureus subsp. aureus 21189]
 gi|329730872|gb|EGG67250.1| sensor protein SrrB [Staphylococcus aureus subsp. aureus 21193]
          Length = 592

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 62/376 (16%), Positives = 154/376 (40%), Gaps = 41/376 (10%)

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
            +   +   +        S++ +  +G+  IN    I+ +N+  + +             
Sbjct: 251 TEIEEHVDALSTSKNIRDSLINSMVEGVLGINESRQIILSNKMANDIMD----------- 299

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK---KLPFSSCY 554
              ++++  + +   + +       +  +          +   +        +    S  
Sbjct: 300 --NIDEDAKAFLLRQIEDTFKSKQTEMRDLEM-----NARFFVVTTSYIDKIEQGGKSGV 352

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
            +T+ D++                      K DF+A VSHE+RTP++ + G++E I +  
Sbjct: 353 VVTVRDMT--------------NEHNLDQMKKDFIANVSHELRTPISLLQGYTESIVDGI 398

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     E    +      +  +VN+LL+++++++  ++++ E   +   + +    
Sbjct: 399 VTE--PDEIKESLAIVLDESKRLNRLVNELLNVARMDAEGLSVNKEVQPIAALLDKMKIK 456

Query: 675 VQLYANEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
            +  A++  + +  ++     R+ + D+  + Q+  N++ NA  +T  G +I I+     
Sbjct: 457 YRQQADDLGLNMTFNYCKK--RVWSYDMDRMDQVLTNLIDNASRYTKPGDEIAITCDENE 514

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
           +E++ L ++DTG G+    L++    F ++  ++    +GTGLGL + K +++ + G   
Sbjct: 515 SEDI-LYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQGTGLGLFICKMIIEEHGGSID 573

Query: 794 IFSTPAKGTLIEIIFP 809
           + S   KGT   I  P
Sbjct: 574 VKSELGKGTTFIIKLP 589


>gi|329314169|gb|AEB88582.1| Sensor protein srrB [Staphylococcus aureus subsp. aureus T0131]
          Length = 564

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 62/376 (16%), Positives = 154/376 (40%), Gaps = 41/376 (10%)

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
            +   +   +        S++ +  +G+  IN    I+ +N+  + +             
Sbjct: 223 TEIEEHVDALSTSKNIRDSLINSMVEGVLGINESRQIILSNKMANDIMD----------- 271

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK---KLPFSSCY 554
              ++++  + +   + +       +  +          +   +        +    S  
Sbjct: 272 --NIDEDAKAFLLRQIEDTFKSKQTEMRDLEM-----NARFFVVTTSYIDKIEQGGKSGV 324

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
            +T+ D++                      K DF+A VSHE+RTP++ + G++E I +  
Sbjct: 325 VVTVRDMT--------------NEHNLDQMKKDFIANVSHELRTPISLLQGYTESIVDGI 370

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     E    +      +  +VN+LL+++++++  ++++ E   +   + +    
Sbjct: 371 VTE--PDEIKESLAIVLDESKRLNRLVNELLNVARMDAEGLSVNKEVQPIAALLDKMKIK 428

Query: 675 VQLYANEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
            +  A++  + +  ++     R+ + D+  + Q+  N++ NA  +T  G +I I+     
Sbjct: 429 YRQQADDLGLNMTFNYCKK--RVWSYDMDRMDQVLTNLIDNASRYTKPGDEIAITCDENE 486

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
           +E++ L ++DTG G+    L++    F ++  ++    +GTGLGL + K +++ + G   
Sbjct: 487 SEDI-LYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQGTGLGLFICKMIIEEHGGSID 545

Query: 794 IFSTPAKGTLIEIIFP 809
           + S   KGT   I  P
Sbjct: 546 VKSELGKGTTFIIKLP 561


>gi|300723733|ref|YP_003713040.1| hybrid sensory histidine kinase [Xenorhabdus nematophila ATCC
           19061]
 gi|297630257|emb|CBJ90908.1| hybrid sensory histidine kinase in two-component regulatory system
           with RcsB and YojN, regulates capsule biosynthesis, cell
           division genes, OsmC expression [Xenorhabdus nematophila
           ATCC 19061]
          Length = 930

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 90/368 (24%), Positives = 161/368 (43%), Gaps = 29/368 (7%)

Query: 446 KMEIEVMQLCSILEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQN 504
           ++E        I+ +   GI+I+   +G+ + +N                  +T  L   
Sbjct: 330 RLEEHEQFNHKIVASAPVGISILRVSDGVSILSNELA-------------HNYTQMLTYE 376

Query: 505 TPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW 564
               +   +           ++ +    T     L +  +  +          + D+S  
Sbjct: 377 DQKRIVDII----CDKTSSYIDVV----TSNNNHLQISFVHSRYRNEEVAICVLIDVSTR 428

Query: 565 KQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYI 624
            + +  L      AE+ +  KS FLA VSHE+RTPL  IIG  E+I++    P       
Sbjct: 429 VKMEKSLQEMATAAEQANQAKSMFLATVSHELRTPLYGIIGNLELIQSHLLPPEST---- 484

Query: 625 EYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRI 684
                ++ S +L+L I++D+LD SKIES ++ +  +  S  E +S  IS       +K +
Sbjct: 485 RLLATMNNSSSLLLKIISDILDFSKIESKQLKIEPKDFSCKEVISHVISNYLPLIAKKAL 544

Query: 685 LIRTSFANNIPRI-LADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTSNEEVILRVRD 743
            +      N+P I   D   ++QI  N+L+NAI FT SG  +I   +   +  +   ++D
Sbjct: 545 GLYCYIEPNVPNIIRNDPVRLQQIISNLLNNAIKFTASGCVVIEIVSK--HGYLYFSIKD 602

Query: 744 TGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTL 803
           TG+G+ +    +  +PF QI  +++   +GTGLGL + + +++   G     S    G++
Sbjct: 603 TGLGIEDKLQFQLFEPFFQISANKESSPQGTGLGLAICEKLINLMDGDIEFISQKYVGSI 662

Query: 804 IEIIFPLY 811
             I  PLY
Sbjct: 663 FSIRIPLY 670


>gi|282924740|ref|ZP_06332407.1| sensor protein srrB [Staphylococcus aureus A9765]
 gi|282592747|gb|EFB97753.1| sensor protein srrB [Staphylococcus aureus A9765]
          Length = 582

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 62/376 (16%), Positives = 154/376 (40%), Gaps = 41/376 (10%)

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
            +   +   +        S++ +  +G+  IN    I+ +N+  + +             
Sbjct: 241 TEIEEHVDALSTSKNIRDSLINSMVEGVLGINESRQIILSNKMANDIMD----------- 289

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK---KLPFSSCY 554
              ++++  + +   + +       +  +          +   +        +    S  
Sbjct: 290 --NIDEDAKAFLLRQIEDTFKSKQTEMRDLEM-----NARFFVVTTSYIDKIEQGGKSGV 342

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
            +T+ D++                      K DF+A VSHE+RTP++ + G++E I +  
Sbjct: 343 VVTVRDMT--------------NEHNLDQMKKDFIANVSHELRTPISLLQGYTESIVDGI 388

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     E    +      +  +VN+LL+++++++  ++++ E   +   + +    
Sbjct: 389 VTE--PDEIKESLAIVLDESKRLNRLVNELLNVARMDAEGLSVNKEVQPIAALLDKMKIK 446

Query: 675 VQLYANEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
            +  A++  + +  ++     R+ + D+  + Q+  N++ NA  +T  G +I I+     
Sbjct: 447 YRQQADDLGLNMTFNYCKK--RVWSYDMDRMDQVLTNLIDNASRYTKPGDEIAITCDENE 504

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
           +E++ L ++DTG G+    L++    F ++  ++    +GTGLGL + K +++ + G   
Sbjct: 505 SEDI-LYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQGTGLGLFICKMIIEEHGGSID 563

Query: 794 IFSTPAKGTLIEIIFP 809
           + S   KGT   I  P
Sbjct: 564 VKSELGKGTTFIIKLP 579


>gi|253730990|ref|ZP_04865155.1| sensor histidine kinase SrrB [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253725273|gb|EES94002.1| sensor histidine kinase SrrB [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
          Length = 549

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 62/376 (16%), Positives = 154/376 (40%), Gaps = 41/376 (10%)

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
            +   +   +        S++ +  +G+  IN    I+ +N+  + +             
Sbjct: 208 TEIEEHVDALSTSKNIRDSLINSMVEGVLGINESRQIILSNKMANDIMD----------- 256

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK---KLPFSSCY 554
              ++++  + +   + +       +  +          +   +        +    S  
Sbjct: 257 --NIDEDAKAFLLRQIEDTFKSKQTEMRDLEM-----NARFFVVTTSYIDKIEQGGKSGV 309

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
            +T+ D++                      K DF+A VSHE+RTP++ + G++E I +  
Sbjct: 310 VVTVRDMT--------------NEHNLDQMKKDFIANVSHELRTPISLLQGYTESIVDGI 355

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     E    +      +  +VN+LL+++++++  ++++ E   +   + +    
Sbjct: 356 VTE--PDEIKESLAIVLDESKRLNRLVNELLNVARMDAEGLSVNKEVQPIAALLDKMKIK 413

Query: 675 VQLYANEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
            +  A++  + +  ++     R+ + D+  + Q+  N++ NA  +T  G +I I+     
Sbjct: 414 YRQQADDLGLNMTFNYCKK--RVWSYDMDRMDQVLTNLIDNASRYTKPGDEIAITCDENE 471

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
           +E++ L ++DTG G+    L++    F ++  ++    +GTGLGL + K +++ + G   
Sbjct: 472 SEDI-LYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQGTGLGLFICKMIIEEHGGSID 530

Query: 794 IFSTPAKGTLIEIIFP 809
           + S   KGT   I  P
Sbjct: 531 VKSELGKGTTFIIKLP 546


>gi|189500689|ref|YP_001960159.1| histidine kinase [Chlorobium phaeobacteroides BS1]
 gi|189496130|gb|ACE04678.1| histidine kinase [Chlorobium phaeobacteroides BS1]
          Length = 671

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 71/262 (27%), Positives = 136/262 (51%), Gaps = 18/262 (6%)

Query: 561 ISEWKQEKNK----------LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVI 610
           ++E +  + K          L +A+  AE  +  KS+FLA +SHE+RTPL A+IG +E++
Sbjct: 253 VTEKRNVEEKEKIQQGLIENLKNARIEAESANKAKSEFLANISHELRTPLHAVIGMTELL 312

Query: 611 KNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSE 670
                    +     Y++ +  S  ++L ++ND+LD S+IE+G+++   E  +L + + +
Sbjct: 313 IETTL----DKDQRYYSDTLYSSAQMLLMLINDILDFSRIEAGRIDEDKEVFNLRQLLQD 368

Query: 671 AISLVQLYANEKRILIRTSFANNIPRIL-ADLRSVKQIALNILSNAIHFTPSGGQIIIST 729
            I++++  A+ K +++ +    NIP ++      +KQ+ LN++ NAI FT  G   +  T
Sbjct: 369 IIAIMKEKASCKGLVLASDIDENIPSVISGYPGYIKQVLLNLIQNAIKFTYRGQVTVTVT 428

Query: 730 THTS---NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVD 786
             +    +  + + V+DTG+G+   +      PF QI  S   +  GTGLGL + + ++ 
Sbjct: 429 VVSETPQDVSLKVSVQDTGIGIPEEQQHLIFNPFTQIDASSTRKEGGTGLGLAIVRKLIA 488

Query: 787 ANMGKFYIFSTPAKGTLIEIIF 808
              G+  + S+   G+      
Sbjct: 489 FMGGEIQVTSSERDGSTFSFTL 510


>gi|161509720|ref|YP_001575379.1| sensor histidine kinase SrrB [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|160368529|gb|ABX29500.1| sensor histidine kinase SrrB [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|269940983|emb|CBI49367.1| sensor kinase SrrB [Staphylococcus aureus subsp. aureus TW20]
 gi|302751323|gb|ADL65500.1| integral membrane sensor signal transduction histidine kinase
           [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|323439507|gb|EGA97228.1| respiratory response protein B [Staphylococcus aureus O11]
 gi|323441525|gb|EGA99176.1| respiratory response protein B [Staphylococcus aureus O46]
          Length = 564

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 62/376 (16%), Positives = 154/376 (40%), Gaps = 41/376 (10%)

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
            +   +   +        S++ +  +G+  IN    I+ +N+  + +             
Sbjct: 223 TEIEEHVDALSTSKNIRDSLINSMVEGVLGINESRQIILSNKMANDIMD----------- 271

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK---KLPFSSCY 554
              ++++  + +   + +       +  +          +   +        +    S  
Sbjct: 272 --NIDEDAKAFLLRQIEDTFKSKQTEMRDLEM-----NARFFVVTTSYIDKIEQGGKSGV 324

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
            +T+ D++                      K DF+A VSHE+RTP++ + G++E I +  
Sbjct: 325 VVTVRDMT--------------NEHNLDQMKKDFIANVSHELRTPISLLQGYTESIVDGI 370

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     E    +      +  +VN+LL+++++++  ++++ E   +   + +    
Sbjct: 371 VTE--PDEIKESLAIVLDESKRLNRLVNELLNVARMDAEGLSVNKEVQPIAALLDKMKIK 428

Query: 675 VQLYANEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
            +  A++  + +  ++     R+ + D+  + Q+  N++ NA  +T  G +I I+     
Sbjct: 429 YRQQADDLGLNMTFNYCKK--RVWSYDMDRMDQVLTNLIDNASRYTKPGDEIAITCDENE 486

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
           +E++ L ++DTG G+    L++    F ++  ++    +GTGLGL + K +++ + G   
Sbjct: 487 SEDI-LYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQGTGLGLFICKMIIEEHGGSID 545

Query: 794 IFSTPAKGTLIEIIFP 809
           + S   KGT   I  P
Sbjct: 546 VKSELGKGTTFIIKLP 561


>gi|150008008|ref|YP_001302751.1| two-component system sensor histidine kinase [Parabacteroides
           distasonis ATCC 8503]
 gi|149936432|gb|ABR43129.1| two-component system sensor histidine kinase [Parabacteroides
           distasonis ATCC 8503]
          Length = 508

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 106/520 (20%), Positives = 187/520 (35%), Gaps = 38/520 (7%)

Query: 302 YLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSHG---NLFYANPSFLLLTKYKSVD 358
            ++   + +L   + +   L    VD  PI FFV   G      Y++P    L      D
Sbjct: 8   EVNTTENKTLEQDYRDLAGLLSNIVDSLPIYFFVKDTGDNFRYVYSSPLMNQLYGRYHND 67

Query: 359 DIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWNRENSLAMTFIPF 418
            +        L   P ++ +       +            R      + +  L       
Sbjct: 68  VVGKTDF--DLFLDPVVAQSFRDMDEEVV-KTGKMQ----RFVEQMIDPKGILRTMDTMK 120

Query: 419 EKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTN 478
             A +  +     GI  +    R  + ++     +L    +A      + +        N
Sbjct: 121 LLAPREDKPPYLVGISWDITKQRQVEEELHSYNKRLALACQAGKIYPWLWD------LVN 174

Query: 479 RAVSKLF----GYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTK 534
                            I    FT  +       +   +T         ++         
Sbjct: 175 GTAELSLEENGQIKHVQITHASFTEKIHP-DYRKVYENITTAFMRGEIDSMRFSFPCRYF 233

Query: 535 EEKLLSLRIIIKKLPFSS-----CYSLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFL 589
            ++ + L  I +                + D++  K+ +  +   K++AE+    KS F+
Sbjct: 234 SDEYVWLEKIGEVYEADPDGKPIRSIGILRDMTVDKRHEADVQA-KRLAEESDRMKSAFI 292

Query: 590 ARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISK 649
           A +SHEIRTPL AI+GFS ++              EY   I+ S   +L ++ D+LDISK
Sbjct: 293 ANMSHEIRTPLNAIVGFSTLLAESDDEEEK----KEYLRIIESSNEFLLQLIGDILDISK 348

Query: 650 IESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFANNIPRILADLRSVKQIAL 709
           IESGKM   +  + L E  +       L      + +      N   I+++   + Q+  
Sbjct: 349 IESGKMEFIYTTLRLSEIFAPQQQAFALRVAP-GVKVIFESDGNDYCIVSEKTRLTQVLT 407

Query: 710 NILSNAIHFTPSGGQIIISTTHTSNEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQI 769
           N LSNA+ FT SG  I      T +  + + V DTG+G++          F ++ + +  
Sbjct: 408 NFLSNAVKFTSSGS-IRFGYRLTDDG-IYVYVTDTGMGISKESQASIFNRFVKLNSFK-- 463

Query: 770 RGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
             +GTGLGL + K +++   GK  + S   KG+      P
Sbjct: 464 --QGTGLGLSICKTIIEKLKGKIGVESEEGKGSTFWFTIP 501


>gi|57650447|ref|YP_186376.1| sensor histidine kinase SrrB [Staphylococcus aureus subsp. aureus
           COL]
 gi|88195296|ref|YP_500100.1| respiratory response protein SrrB [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|151221611|ref|YP_001332433.1| staphylococcal respiratory response protein SrrB [Staphylococcus
           aureus subsp. aureus str. Newman]
 gi|221140088|ref|ZP_03564581.1| staphylococcal respiratory response protein SrrB [Staphylococcus
           aureus subsp. aureus str. JKD6009]
 gi|253733261|ref|ZP_04867426.1| histidine kinase [Staphylococcus aureus subsp. aureus TCH130]
 gi|258451149|ref|ZP_05699184.1| sensor protein srrB [Staphylococcus aureus A5948]
 gi|284024551|ref|ZP_06378949.1| staphylococcal respiratory response protein SrrB [Staphylococcus
           aureus subsp. aureus 132]
 gi|294848521|ref|ZP_06789267.1| sensor protein srrB [Staphylococcus aureus A9754]
 gi|297207789|ref|ZP_06924224.1| sensor histidine kinase SrrB [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|300911870|ref|ZP_07129313.1| sensor histidine kinase SrrB [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|76363425|sp|Q5HFT1|SRRB_STAAC RecName: Full=Sensor protein srrB; AltName: Full=Staphylococcal
           respiratory response protein B
 gi|76363429|sp|Q6G973|SRRB_STAAS RecName: Full=Sensor protein srrB; AltName: Full=Staphylococcal
           respiratory response protein B
 gi|76363430|sp|Q8NWF3|SRRB_STAAW RecName: Full=Sensor protein srrB; AltName: Full=Staphylococcal
           respiratory response protein B
 gi|123003464|sp|Q2FY80|SRRB_STAA8 RecName: Full=Sensor protein srrB; AltName: Full=Staphylococcal
           respiratory response protein B
 gi|57284633|gb|AAW36727.1| sensor histidine kinase SrrB [Staphylococcus aureus subsp. aureus
           COL]
 gi|87202854|gb|ABD30664.1| staphylococcal respiratory response protein SrrB, putative
           [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|150374411|dbj|BAF67671.1| staphylococcal respiratory response protein SrrB [Staphylococcus
           aureus subsp. aureus str. Newman]
 gi|253728801|gb|EES97530.1| histidine kinase [Staphylococcus aureus subsp. aureus TCH130]
 gi|257861204|gb|EEV84017.1| sensor protein srrB [Staphylococcus aureus A5948]
 gi|294824547|gb|EFG40970.1| sensor protein srrB [Staphylococcus aureus A9754]
 gi|296887806|gb|EFH26704.1| sensor histidine kinase SrrB [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|300886116|gb|EFK81318.1| sensor histidine kinase SrrB [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|315198818|gb|EFU29146.1| staphylococcal respiratory response protein SrrB [Staphylococcus
           aureus subsp. aureus CGS01]
 gi|320140625|gb|EFW32479.1| sensor protein SrrB [Staphylococcus aureus subsp. aureus MRSA131]
 gi|320144161|gb|EFW35930.1| sensor protein SrrB [Staphylococcus aureus subsp. aureus MRSA177]
          Length = 583

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 62/376 (16%), Positives = 154/376 (40%), Gaps = 41/376 (10%)

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
            +   +   +        S++ +  +G+  IN    I+ +N+  + +             
Sbjct: 242 TEIEEHVDALSTSKNIRDSLINSMVEGVLGINESRQIILSNKMANDIMD----------- 290

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK---KLPFSSCY 554
              ++++  + +   + +       +  +          +   +        +    S  
Sbjct: 291 --NIDEDAKAFLLRQIEDTFKSKQTEMRDLEM-----NARFFVVTTSYIDKIEQGGKSGV 343

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
            +T+ D++                      K DF+A VSHE+RTP++ + G++E I +  
Sbjct: 344 VVTVRDMT--------------NEHNLDQMKKDFIANVSHELRTPISLLQGYTESIVDGI 389

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     E    +      +  +VN+LL+++++++  ++++ E   +   + +    
Sbjct: 390 VTE--PDEIKESLAIVLDESKRLNRLVNELLNVARMDAEGLSVNKEVQPIAALLDKMKIK 447

Query: 675 VQLYANEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
            +  A++  + +  ++     R+ + D+  + Q+  N++ NA  +T  G +I I+     
Sbjct: 448 YRQQADDLGLNMTFNYCKK--RVWSYDMDRMDQVLTNLIDNASRYTKPGDEIAITCDENE 505

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
           +E++ L ++DTG G+    L++    F ++  ++    +GTGLGL + K +++ + G   
Sbjct: 506 SEDI-LYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQGTGLGLFICKMIIEEHGGSID 564

Query: 794 IFSTPAKGTLIEIIFP 809
           + S   KGT   I  P
Sbjct: 565 VKSELGKGTTFIIKLP 580


>gi|21283174|ref|NP_646262.1| respiratory response protein SrrB [Staphylococcus aureus subsp.
           aureus MW2]
 gi|49486329|ref|YP_043550.1| sensor kinase protein [Staphylococcus aureus subsp. aureus MSSA476]
 gi|87162310|ref|YP_494137.1| staphylococcal respiratory response protein, SrrB [Staphylococcus
           aureus subsp. aureus USA300_FPR3757]
 gi|262049078|ref|ZP_06021955.1| staphylococcal respiratory response protein SrrB [Staphylococcus
           aureus D30]
 gi|21204614|dbj|BAB95310.1| staphylococcal respiratory response protein SrrB [Staphylococcus
           aureus subsp. aureus MW2]
 gi|49244772|emb|CAG43208.1| sensor kinase protein [Staphylococcus aureus subsp. aureus MSSA476]
 gi|87128284|gb|ABD22798.1| staphylococcal respiratory response protein, SrrB [Staphylococcus
           aureus subsp. aureus USA300_FPR3757]
 gi|259162747|gb|EEW47312.1| staphylococcal respiratory response protein SrrB [Staphylococcus
           aureus D30]
          Length = 588

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 62/376 (16%), Positives = 154/376 (40%), Gaps = 41/376 (10%)

Query: 438 VDTRINKRKMEIEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPF 497
            +   +   +        S++ +  +G+  IN    I+ +N+  + +             
Sbjct: 247 TEIEEHVDALSTSKNIRDSLINSMVEGVLGINESRQIILSNKMANDIMD----------- 295

Query: 498 TVFLEQNTPSVMNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIK---KLPFSSCY 554
              ++++  + +   + +       +  +          +   +        +    S  
Sbjct: 296 --NIDEDAKAFLLRQIEDTFKSKQTEMRDLEM-----NARFFVVTTSYIDKIEQGGKSGV 348

Query: 555 SLTMHDISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQR 614
            +T+ D++                      K DF+A VSHE+RTP++ + G++E I +  
Sbjct: 349 VVTVRDMT--------------NEHNLDQMKKDFIANVSHELRTPISLLQGYTESIVDGI 394

Query: 615 FGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISL 674
                     E    +      +  +VN+LL+++++++  ++++ E   +   + +    
Sbjct: 395 VTE--PDEIKESLAIVLDESKRLNRLVNELLNVARMDAEGLSVNKEVQPIAALLDKMKIK 452

Query: 675 VQLYANEKRILIRTSFANNIPRILA-DLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS 733
            +  A++  + +  ++     R+ + D+  + Q+  N++ NA  +T  G +I I+     
Sbjct: 453 YRQQADDLGLNMTFNYCKK--RVWSYDMDRMDQVLTNLIDNASRYTKPGDEIAITCDENE 510

Query: 734 NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFY 793
           +E++ L ++DTG G+    L++    F ++  ++    +GTGLGL + K +++ + G   
Sbjct: 511 SEDI-LYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQGTGLGLFICKMIIEEHGGSID 569

Query: 794 IFSTPAKGTLIEIIFP 809
           + S   KGT   I  P
Sbjct: 570 VKSELGKGTTFIIKLP 585


>gi|313149047|ref|ZP_07811240.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
 gi|313137814|gb|EFR55174.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
          Length = 913

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 122/671 (18%), Positives = 236/671 (35%), Gaps = 31/671 (4%)

Query: 162 DLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEK 221
           ++  +PI S+     G     + +      +     +   K      E     S V    
Sbjct: 127 EVKVVPIRSKTGPIIGH--ILLANDVTAVKEADFRTEESKKNLEMAMEAANMSSWVYDVN 184

Query: 222 YDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLN 281
             +FS     P +     +  L      +D    T+ +  L ++E            N  
Sbjct: 185 KRVFSSLYGDPIVENSLTMDELLNKLHPQDHASLTKLFSQLINKEVQ-QGHITVRFYNEQ 243

Query: 282 QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET----VDKCPIPFFVYS 337
           +   + Y   ++ +S+   + L       ++      +          +         + 
Sbjct: 244 EKRYRHYESRMRLSSEHLGKLLIIGTQIEVTERIQMVKKTQDLITKRELAMQVSNIVHWD 303

Query: 338 HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397
                    S+       + D +        ++    LS        ML   D   I  +
Sbjct: 304 FDVQTQKFESYNDPVNDYASDRLLSVTEFMDVIHPEDLSSAYDAIQSMLSGKD-FTINFT 362

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
            R+ T   +      +  +PF + ++    +   G             +++    ++   
Sbjct: 363 CRVQTKYDDSWQYCNVMGVPF-ERDENDNIIRFTGFRQNISKLHQLNEELKERNYKMELT 421

Query: 458 LEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
            +         + R     + N  V+     P + I  + +      +    +   L  +
Sbjct: 422 FKTVGMSYWDFDVRSKQFKAFNDPVNDY--NPEKTISPEDYLKAAHPDDVDSVRENLNHM 479

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRII--IKKLPFSSCYSLTMHDI----SEWKQEKNK 570
           +     + L       TK +K   + ++  I+         +    I    ++W++   +
Sbjct: 480 I-QGTDKDLSFKYRSKTKWDKEWQVLVVTGIQVERDKKGRVVRYTGIEFNNTKWEKMAQE 538

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           L   K+ AE     KS FLA +SHEIRTPL AI+GFSE++ +            EY   I
Sbjct: 539 LKELKEKAELSDRLKSAFLANMSHEIRTPLNAIVGFSELMVSCD----DPEEKEEYMGII 594

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
             +  L+L ++ND+LD+SKIESG +    E  +L +  +E  +++Q       + +R   
Sbjct: 595 QSNNELLLRLINDILDLSKIESGILERKRERFNLSKVCNELYTMMQPKITNPEVELRLGN 654

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-SNEEVILRVRDTGVGMT 749
           +     I  D   +KQ+ +N L+NA+  T SG    I   ++     +   V D+GVG+ 
Sbjct: 655 SGPDCWIFLDRNRLKQVWMNYLTNAVKCTHSG---YIKMGYSIEKGGIRFYVEDSGVGIP 711

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
               ++    F ++        +GTGLGL +++A+++   GK    S P  G+      P
Sbjct: 712 LEVQDRVFGRFQKL----NEFAQGTGLGLAISRAIIEGADGKVGFSSVPGVGSTFWAWIP 767

Query: 810 LYDTSHPHDCI 820
                   D I
Sbjct: 768 CEVEIQEEDII 778



 Score = 55.4 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/315 (10%), Positives = 92/315 (29%), Gaps = 23/315 (7%)

Query: 289 FGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPETVDKCPIPFFVYSH-GNLFYANPS 347
            G ++ N+  S E  +      +S    +    T       P+   +Y   G L   N  
Sbjct: 1   MGPMKQNAVTSAEDGNPSFEKEMSDLIQDQLLFTESIYANLPVGIEIYDANGILRSINDH 60

Query: 348 FLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAASARLHTIQWN- 406
            L +   +         G+  L ++P   +    K   +   +   +        I  + 
Sbjct: 61  ALHMYGVEDRT---TVIGVVNLFNSPYCDEKLRTK---IQAGEDIVLEFEYDFDRINKDA 114

Query: 407 -----RENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSILEAT 461
                 + S+          ++    +    +  +    +    + E     L   +EA 
Sbjct: 115 YFSSHNQKSMIYEVKVVPIRSKTGPIIGHILLANDVTAVKEADFRTEESKKNLEMAMEAA 174

Query: 462 SDGIAIINREGIILSTNRAVSKLFGYP--VEDILRKPFTVFLEQNTPSVMNHYLTEILSL 519
           +    + +    +       S L+G P     +        L     + +    +++++ 
Sbjct: 175 NMSSWVYDVNKRV------FSSLYGDPIVENSLTMDELLNKLHPQDHASLTKLFSQLINK 228

Query: 520 DLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579
           +++Q    +   + +E++       ++         L +   ++ +  +      K    
Sbjct: 229 EVQQGHITVRFYNEQEKRYRHYESRMRLSSEHLGKLLIIG--TQIEVTERIQMVKKTQDL 286

Query: 580 KESSHKSDFLARVSH 594
                 +  ++ + H
Sbjct: 287 ITKRELAMQVSNIVH 301


>gi|255011234|ref|ZP_05283360.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
          Length = 910

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 122/671 (18%), Positives = 236/671 (35%), Gaps = 31/671 (4%)

Query: 162 DLAALPIYSRNREFSGFRGFGIVHVNRVDNDPRALGKRLDKKFSHLHEIKKGHSSVEKEK 221
           ++  +PI S+     G     + +      +     +   K      E     S V    
Sbjct: 124 EVKVVPIRSKTGPIIGH--ILLANDVTAVKEADFRTEESKKNLEMAMEAANMSSWVYDVN 181

Query: 222 YDIFSQQSPPPHLRMKNKVSSLTEYYAHKDDVLKTEKYPLLTSEESSLPEQEDFHTINLN 281
             +FS     P +     +  L      +D    T+ +  L ++E            N  
Sbjct: 182 KRVFSSLYGDPIVENSLTMDELLNKLHPQDHASLTKLFSQLINKEVQ-QGHITVRFYNEQ 240

Query: 282 QYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDEGENLTPET----VDKCPIPFFVYS 337
           +   + Y   ++ +S+   + L       ++      +          +         + 
Sbjct: 241 EKRYRHYESRMRLSSEHLGKLLIIGTQIEVTERIQMVKKTQDLITKRELAMQVSNIVHWD 300

Query: 338 HGNLFYANPSFLLLTKYKSVDDIEIAGGLSTLLDAPKLSDNNAIKPVMLYRSDRTCIAAS 397
                    S+       + D +        ++    LS        ML   D   I  +
Sbjct: 301 FDVQTQKFESYNDPVNDYASDRLLSVTEFMDVIHPEDLSSAYDAIQSMLSGKD-FTINFT 359

Query: 398 ARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKMEIEVMQLCSI 457
            R+ T   +      +  +PF + ++    +   G             +++    ++   
Sbjct: 360 CRVQTKYDDSWQYCNVMGVPF-ERDENDNIIRFTGFRQNISKLHQLNEELKERNYKMELT 418

Query: 458 LEATSDGIAIIN-REGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEI 516
            +         + R     + N  V+     P + I  + +      +    +   L  +
Sbjct: 419 FKTVGMSYWDFDVRSKQFKAFNDPVNDY--NPEKTISPEDYLKAAHPDDVDSVRENLNHM 476

Query: 517 LSLDLRQTLEKITLGSTKEEKLLSLRII--IKKLPFSSCYSLTMHDI----SEWKQEKNK 570
           +     + L       TK +K   + ++  I+         +    I    ++W++   +
Sbjct: 477 I-QGTDKDLSFKYRSKTKWDKEWQVLVVTGIQVERDKKGRVVRYTGIEFNNTKWEKMAQE 535

Query: 571 LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYI 630
           L   K+ AE     KS FLA +SHEIRTPL AI+GFSE++ +            EY   I
Sbjct: 536 LKELKEKAELSDRLKSAFLANMSHEIRTPLNAIVGFSELMVSCD----DPEEKEEYMGII 591

Query: 631 DRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSF 690
             +  L+L ++ND+LD+SKIESG +    E  +L +  +E  +++Q       + +R   
Sbjct: 592 QSNNELLLRLINDILDLSKIESGILERKRERFNLSKVCNELYTMMQPKITNPEVELRLGN 651

Query: 691 ANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT-SNEEVILRVRDTGVGMT 749
           +     I  D   +KQ+ +N L+NA+  T SG    I   ++     +   V D+GVG+ 
Sbjct: 652 SGPDCWIFLDRNRLKQVWMNYLTNAVKCTHSG---YIKMGYSIEKGGIRFYVEDSGVGIP 708

Query: 750 NYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIFP 809
               ++    F ++        +GTGLGL +++A+++   GK    S P  G+      P
Sbjct: 709 LEVQDRVFGRFQKL----NEFAQGTGLGLAISRAIIEGADGKVGFSSVPGVGSTFWAWIP 764

Query: 810 LYDTSHPHDCI 820
                   D I
Sbjct: 765 CEVEIQEEDII 775



 Score = 45.4 bits (106), Expect = 0.040,   Method: Composition-based stats.
 Identities = 21/152 (13%), Positives = 43/152 (28%), Gaps = 22/152 (14%)

Query: 455 CSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLT 514
            SI      GI I +  GI+ S N     ++G              +        +  L 
Sbjct: 32  ESIYANLPVGIEIYDANGILRSINDHALHMYGVEDR----TTVIGVVNLFNSPYCDEKLR 87

Query: 515 EILSLDLRQTLEKITLGSTKEEK-----------LLSLRIIIKKLPFSS--CYSLTMHDI 561
             +       LE         +            +  ++++  +        + L  +D+
Sbjct: 88  TKIQAGEDIVLEFEYDFDRINKDAYFSSHNQKSMIYEVKVVPIRSKTGPIIGHILLANDV 147

Query: 562 SEWKQEKNKLSHAKKIAEKESSHKSDFLARVS 593
           +  K+   +   +KK  E          A +S
Sbjct: 148 TAVKEADFRTEESKKNLEMAMEA-----ANMS 174


>gi|253574564|ref|ZP_04851905.1| integral membrane sensor hybrid histidine kinase [Paenibacillus sp.
           oral taxon 786 str. D14]
 gi|251846269|gb|EES74276.1| integral membrane sensor hybrid histidine kinase [Paenibacillus sp.
           oral taxon 786 str. D14]
          Length = 485

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 79/258 (30%), Positives = 124/258 (48%), Gaps = 11/258 (4%)

Query: 563 EWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPR 622
           E ++ K  L    +   + SSHKS+FLA +SHE+RTPL +II  +E+I         +  
Sbjct: 218 ELQKAKIGLEDRAEQLAEASSHKSEFLATMSHELRTPLNSIINLAEMIAE---SDEASEE 274

Query: 623 YIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEK 682
             EY   I +SG  +L I+ND+LD+SK+E+G++ +  E V L E         +  A +K
Sbjct: 275 ISEYGRIIHKSGEELLQIINDILDLSKVEAGRLEITNEEVVLAEIPVWMQLQFEQIAAQK 334

Query: 683 RILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHT------SNE 735
           +I   T    ++P  I++D + + QI  N+LSNA  FT  G  + +             E
Sbjct: 335 KIAFTTRLEESLPDSIISDPQRIAQILRNLLSNAFKFTHEG-HVELDIRRAPAKGTAEGE 393

Query: 736 EVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
            ++  V DTG+G+   +     + F Q   S   R  GTGLGL ++  +     G   + 
Sbjct: 394 WLVFTVSDTGIGVAEDKQRAVFEAFQQADGSISRRYGGTGLGLSISSNLARLLGGYLRME 453

Query: 796 STPAKGTLIEIIFPLYDT 813
           S   +G+      PL   
Sbjct: 454 SKEGQGSTFSFYLPLKPA 471


>gi|254785929|ref|YP_003073358.1| transport-associated [Teredinibacter turnerae T7901]
 gi|237686801|gb|ACR14065.1| transport-associated [Teredinibacter turnerae T7901]
          Length = 485

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 87/489 (17%), Positives = 180/489 (36%), Gaps = 46/489 (9%)

Query: 333 FFVYSHGNLFYANPSFLLLTKYKSVDDIEIAGG----LSTLLDAPKLSDNNAIKPVMLYR 388
             +  HG +   +     +  +++   I         +ST        D    +      
Sbjct: 24  IVLDEHGRILAISEQAQTILGWRAEQLIGQMAHDRICISTRRLHHAPEDCPICRDAD--- 80

Query: 389 SDRTCIAASARLHTIQWNRENSLAMTFIPFEKANQFPENMPQNGIEPEDVDTRINKRKME 448
                   S  + +  W       ++            +         +     +  +++
Sbjct: 81  --------STTVKSSFWLSAEGDYVSVDYRTARLPVTADGHFVVRFHRNEQQDYSFAELQ 132

Query: 449 IEVMQLCSILEATSDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSV 508
               +    ++     I   +  G +L  N A+  L      D         + ++   +
Sbjct: 133 ----KFADFVDKNPAAIVEFDEFGQMLFCNPAMQHLMMTHGFDDQGH--ARIMPRDINEI 186

Query: 509 MNHYLTEILSLDLRQTLEKITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEWKQEK 568
               +    S +LR  +E        ++   +        P        + D+SE K+ +
Sbjct: 187 CAQIVD---SQNLRAPVEVAI-----DDFWFNWHFSPLVSPVGQSVIGYVFDVSEVKRAQ 238

Query: 569 NKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYAN 628
            +       +   +  + DF A++ HE+RTPL AI+G+S+++  +    L + R ++   
Sbjct: 239 AQ------ASVARAQARRDFYAKMIHELRTPLNAIVGYSDLLLCRNAENLKD-RDLKALR 291

Query: 629 YIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRT 688
            I   G  + ++++D LDISKIE+GKM          + + E    +   A  K++    
Sbjct: 292 GIKVGGMQLNELISDTLDISKIEAGKMTTEITLFRPQDVLDEIHEQMHYLAEMKKLHYEV 351

Query: 689 SFANNIPRILADLRSVKQIALNILSNAIHFTPSGGQIIISTTHTS--------NEEVILR 740
                   + +D+  V+QI +N++SNA+ +T  G Q+ +               EE ++ 
Sbjct: 352 QCPPEF-TVASDIHKVRQILINLISNAVKYTRKG-QVSVVVQPLDVEPPMEDCAEEFLIE 409

Query: 741 VRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAK 800
           V DTG+G+   +L+     + ++  S     +GTGLGL L   +V+   G+  + S    
Sbjct: 410 VADTGMGIPADQLDSLFDSYQRVKESNTQGIQGTGLGLALVSDVVEILGGEISVASEYGA 469

Query: 801 GTLIEIIFP 809
           G+   +  P
Sbjct: 470 GSRFSVRLP 478



 Score = 50.4 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/129 (14%), Positives = 46/129 (35%), Gaps = 2/129 (1%)

Query: 462 SDGIAIINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDL 521
            DG  +++  G IL+ +     + G+  E ++ +     +  +T  + +      +  D 
Sbjct: 20  PDGSIVLDEHGRILAISEQAQTILGWRAEQLIGQMAHDRICISTRRLHHAPEDCPICRDA 79

Query: 522 RQTLEKITLGSTKEEKLLSLRIIIKKLP--FSSCYSLTMHDISEWKQEKNKLSHAKKIAE 579
             T  K +   + E   +S+     +LP      + +  H   +      +L       +
Sbjct: 80  DSTTVKSSFWLSAEGDYVSVDYRTARLPVTADGHFVVRFHRNEQQDYSFAELQKFADFVD 139

Query: 580 KESSHKSDF 588
           K  +   +F
Sbjct: 140 KNPAAIVEF 148


>gi|317471314|ref|ZP_07930673.1| hsp90-like protein [Anaerostipes sp. 3_2_56FAA]
 gi|316901207|gb|EFV23162.1| hsp90-like protein [Anaerostipes sp. 3_2_56FAA]
          Length = 843

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 93/473 (19%), Positives = 182/473 (38%), Gaps = 36/473 (7%)

Query: 367 STLLDAPKLSDNNAIKPVMLYRS----DRTCI----AASARLHTIQWNRENSLAMTFIPF 418
           +     P    ++     ML       DR            +  +Q +   + A      
Sbjct: 205 NAFCVPPHRGRHSEWTAYMLRSRVVPRDREQYKNGLEPEKMMSRLQKDGPYTFAFCISDD 264

Query: 419 EKANQFPENMPQNGIEP---------EDVDTRINKRKMEIEVM---QLCSILEATSDGIA 466
           +   +                     +  D+   ++ +   +    +L + +  +S  + 
Sbjct: 265 KGDIRTKNMTVSAVDLRLGRVCLSRSDITDSIREQQGLLHMIAYTFELAAFINLSSRSLT 324

Query: 467 IINREGIILSTNRAVSKLFGYPVEDILRKPFTVFLEQNTPSVMNHYLTEILSLDLRQTLE 526
           +  RE ++ +      + +   +   +    T   ++   +            +     +
Sbjct: 325 LYTRESVLDNLQPHYVENYDRTILKFVEHHGTSEHKEEARTQFRIETMTERLREKPNGYD 384

Query: 527 KITLGSTKEEKLLSLRIIIKKLPFSSCYSLTMHDISEW----KQEKNKLSHAKKIAEKES 582
            +        +      ++          L   D++E     +Q K +L HA   AE+ +
Sbjct: 385 FLFSYEGDNGERFKQINVLWGDVNHRTLCLVRADVTEMLTAERQAKKRLEHALASAEEAN 444

Query: 583 SHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVN 642
             KSDFL+ +SH+IRTP+ AI+G +  + +   G   + R   Y + I+ S   +L ++N
Sbjct: 445 KAKSDFLSAMSHDIRTPMNAIMGMT-TLASAYLG--DDERVAGYLDKIEVSSRHLLSLIN 501

Query: 643 DLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKRILIRTSFAN-NIPRILADL 701
           D+LD+SKIE  ++ L+   VS+ + + +   ++   A E  + +       N      D 
Sbjct: 502 DILDMSKIERAQITLNLSKVSIPKLLDQLSVMILSQAEEAGLTLSIRAEGVNHEDFYGDP 561

Query: 702 RSVKQIALNILSNAIHFTPSGGQIIISTTHTS----NEEV--ILRVRDTGVGMTNYELEK 755
             + QI +N+LSNA+ FT  GG + +             V     VRDTG+GM    + K
Sbjct: 562 LRINQILINLLSNAVKFTNKGGMVELLAEEVETEGSAGRVSYHFTVRDTGIGMPEEFVSK 621

Query: 756 AMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIFSTPAKGTLIEIIF 808
             +PF +  +      EGTGLGL + K ++D   GK  + S   +G++  +  
Sbjct: 622 IFEPFSR--SGNAAHIEGTGLGLSITKGLIDLMGGKISVESWINEGSVFRVEL 672


>gi|255015222|ref|ZP_05287348.1| two-component hybrid sensor kinase/response regulator [Bacteroides
           sp. 2_1_7]
          Length = 793

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 76/269 (28%), Positives = 137/269 (50%), Gaps = 12/269 (4%)

Query: 548 LPFSSCYSLTMHDISEWKQEKNK---LSHAKKIAEKESSHKSDFLARVSHEIRTPLTAII 604
               +   LT  DI E ++E+ +   L  A ++A+  +  KSDFL+R+SH+IRTP+ AII
Sbjct: 243 DKERNILLLTRTDIMEVREEERQRQLLQDALQVAKSANQAKSDFLSRMSHDIRTPMNAII 302

Query: 605 GFSEVIKNQRFGPLGNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSL 664
           G + +            R ++    I  S  L+L+++N++LD+SK+ESG + L  E   +
Sbjct: 303 GMTTIASMHID---DRERIVDCLKKIMVSSKLLLNLINEVLDMSKVESGHILLTDEEFDM 359

Query: 665 DEAVSEAISLVQLYANEKRILIRTSF-ANNIPRILADLRSVKQIALNILSNAIHFTPSGG 723
            E +   I++VQ   ++K    R         +++ D++ ++Q+ LN+LSNAI +TP  G
Sbjct: 360 GELLQSVITMVQTSVSQKFQDFRVHLFQIKHEKLIGDVQRIQQVLLNLLSNAIKYTPDYG 419

Query: 724 QIIISTTHTS-----NEEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGL 778
           +I +                + V D G+G+    L K  +PF +  ++     +GTGLG+
Sbjct: 420 KITLEIREKPIKNGNYGLFEITVIDNGIGIKPDFLHKVFEPFERAEDATLRNIQGTGLGM 479

Query: 779 PLAKAMVDANMGKFYIFSTPAKGTLIEII 807
            +++ +     G+  + S   KG++    
Sbjct: 480 AISRNIAHMMNGEILVESEYGKGSVFTFT 508


>gi|255731748|ref|XP_002550798.1| hypothetical protein CTRG_05096 [Candida tropicalis MYA-3404]
 gi|240131807|gb|EER31366.1| hypothetical protein CTRG_05096 [Candida tropicalis MYA-3404]
          Length = 1128

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 72/252 (28%), Positives = 127/252 (50%), Gaps = 13/252 (5%)

Query: 564 WKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSEVIKNQRFGPLGNPRY 623
            ++   + + A++ AE  +S KS+FLA +SHEIRTPL  IIG +++  +           
Sbjct: 476 LRESLQRNTAAREAAELANSAKSEFLANMSHEIRTPLNGIIGMTQLSLDTEL----TQYQ 531

Query: 624 IEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQLYANEKR 683
            E  + +    N +L I++D+LDISKIE+ +M +     SL   V  A+  + + A EK 
Sbjct: 532 REMLSIVHNLANSLLTIIDDILDISKIEANRMTVEQIDFSLRGTVFGALKTLAVKAIEKN 591

Query: 684 ILIRTSFANNIPR-ILADLRSVKQIALNILSNAIHFTPSGGQIIISTTH-----TSNEEV 737
           + +     ++ P  ++ D   ++Q+ LN+  NAI FT  G ++ +S          ++++
Sbjct: 592 LDLTYQCDSSFPDNLIGDSFRLRQVILNLAGNAIKFTKEG-KVSVSVKKSDKVGEDSDKL 650

Query: 738 ILRV--RDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLAKAMVDANMGKFYIF 795
           +L V   DTG+G+   +L      F Q   S   +  GTGLGL ++K ++    G+ ++ 
Sbjct: 651 LLEVCVSDTGIGIEKDKLGLIFDTFCQADGSTTRKFGGTGLGLSISKQLIHLMGGEIWVT 710

Query: 796 STPAKGTLIEII 807
           S    G+     
Sbjct: 711 SEYGSGSNFYFT 722


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.308    0.137    0.369 

Lambda     K      H
   0.267   0.0423    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,211,551,401
Number of Sequences: 14124377
Number of extensions: 352812907
Number of successful extensions: 1643691
Number of sequences better than 10.0: 10000
Number of HSP's better than 10.0 without gapping: 74800
Number of HSP's successfully gapped in prelim test: 41544
Number of HSP's that attempted gapping in prelim test: 1186537
Number of HSP's gapped (non-prelim): 212157
length of query: 820
length of database: 4,842,793,630
effective HSP length: 148
effective length of query: 672
effective length of database: 2,752,385,834
effective search space: 1849603280448
effective search space used: 1849603280448
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.1 bits)
S2: 86 (37.7 bits)